PeakID (cmd=annotatePeaks.pl union.bed hg38 -annStats results/all_union.homer.annStats.txt)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
187452	chr5	142117321	142117850	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	8806	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
49294	chr12	20985551	20985750	+	0	NA	intron (NM_001371097, intron 13 of 15)	L1PB1|LINE|L1	-30046	NM_001009562	338821		NM_001009562		SLCO1B7	LST-3|LST-3TM12|LST3|OATP1B7|SLC21A21	solute carrier organic anion transporter family member 1B7 (putative)	pseudo
117234	chr19	19426121	19426380	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	-8813	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
149360	chr21	29301351	29301650	+	0	NA	intron (NM_206866, intron 1 of 4)	intron (NM_206866, intron 1 of 4)	2125	NM_206866	571		NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding
115946	chr19	16714721	16715130	+	0	NA	Intergenic	Intergenic	-4922	NM_001290355	284434		NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
75251	chr15	64903351	64903880	+	0	NA	Intergenic	AluJb|SINE|Alu	-8287	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
71259	chr14	105204451	105205980	+	0	NA	Intergenic	Intergenic	-23892	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
103182	chr17	77447951	77448530	+	0	NA	intron (NM_001293696, intron 1 of 9)	AluSz|SINE|Alu	-2509	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
46573	chr11	128501951	128502550	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	20060	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
91156	chr17	3767771	3767930	+	0	NA	intron (NM_002208, intron 2 of 30)	AluJb|SINE|Alu	33338	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
232422	chr9	136091871	136092030	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	3339	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
83089	chr16	22440021	22441130	+	0	NA	intron (NR_027154, intron 1 of 28)	AluJb|SINE|Alu	-2860	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
92552	chr17	8958121	8959780	+	0	NA	intron (NM_001142633, intron 1 of 18)	AluSp|SINE|Alu	6757	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
173539	chr4	10075921	10076380	+	0	NA	intron (NM_017491, intron 14 of 14)	intron (NM_017491, intron 14 of 14)	2542	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
142921	chr20	18447351	18447460	+	0	NA	intron (NM_001351684, intron 7 of 20)	AluSx1|SINE|Alu	19625	NM_001351684	55184		NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84	double zinc ribbon and ankyrin repeat domains 1	protein-coding
152920	chr22	22773201	22773400	+	0	NA	Intergenic	LTR16|LTR|ERVL	-49476	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
178628	chr4	152115521	152116380	+	0	NA	Intergenic	Intergenic	15132	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
189204	chr5	171431071	171432230	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	12003	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
171425	chr3	196244151	196244450	+	0	NA	intron (NM_005017, intron 6 of 9)	SVA_C|Retroposon|SVA	27766	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
212139	chr7	116524601	116527330	+	0	NA	promoter-TSS (NM_001172897)	promoter-TSS (NM_001172897)	-397	NM_001172896	857		NM_001753	ENSG00000105974	CAV1	BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21	caveolin 1	protein-coding
160055	chr3	18499301	18499800	+	0	NA	intron (NR_125803, intron 4 of 6)	intron (NR_125803, intron 4 of 6)	-53958	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
89262	chr16	88660001	88660300	+	0	NA	intron (NM_002461, intron 1 of 9)	intron (NM_002461, intron 1 of 9)	2941	NM_002461	4597		NM_002461	ENSG00000167508	MVD	FP17780|MDDase|MPD|POROK7	mevalonate diphosphate decarboxylase	protein-coding
67529	chr14	71004901	71005100	+	0	NA	intron (NM_014982, intron 8 of 35)	intron (NM_014982, intron 8 of 35)	97541	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
92044	chr17	7496271	7496980	+	0	NA	intron (NM_000937, intron 4 of 29)	intron (NM_000937, intron 4 of 29)	12259	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
105822	chr18	2968421	2969080	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	-22127	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
9028	chr1	44774271	44774430	+	0	NA	Intergenic	L1MA1|LINE|L1	-1190	NM_001012	6202		NM_001012	ENSG00000142937	RPS8	S8|eS8	ribosomal protein S8	protein-coding
162353	chr3	47828271	47828630	+	0	NA	intron (NM_014966, intron 6 of 22)	AluJo|SINE|Alu	-21105	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
733	chr1	1468171	1468400	+	0	NA	intron (NM_001039211, intron 11 of 11)	intron (NM_001039211, intron 11 of 11)	-3480	NM_031921	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
159361	chr3	13311801	13312080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-28683	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
66883	chr14	65099821	65100280	+	0	NA	intron (NR_073137, intron 1 of 3)	MER102c|DNA|hAT-Charlie	2467	NM_002382	4149		NM_002382	ENSG00000125952	MAX	PDMCS|bHLHd4	MYC associated factor X	protein-coding
62718	chr13	104875051	104875550	+	0	NA	Intergenic	Intergenic	-590567	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
146239	chr20	48823801	48824630	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	3784	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
63507	chr13	114234571	114235630	+	0	NA	exon (NM_001318518, exon 1 of 17)	exon (NM_001318518, exon 1 of 17)	203	NM_001330101	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
158894	chr3	9919771	9920130	+	0	NA	intron (NM_153460, intron 5 of 18)	intron (NM_153460, intron 5 of 18)	2852	NM_153461	84818		NM_032732	ENSG00000163702	IL17RC	CANDF9|IL17-RL|IL17RL	interleukin 17 receptor C	protein-coding
118814	chr19	38537871	38538030	+	0	NA	exon (NM_001042723, exon 83 of 105)	exon (NM_001042723, exon 83 of 105)	-58397	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
100360	chr17	60024471	60024630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-5498	NR_002924	653645		NR_002924	ENSG00000267104	TBC1D3P1-DHX40P1	DHX40P|DHX40P1|TBC1D3P1	TBC1D3P1-DHX40P1 readthrough, transcribed pseudogene	pseudo
117380	chr19	19588671	19589030	+	0	NA	intron (NM_025245, intron 2 of 7)	intron (NM_025245, intron 2 of 7)	29837	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
195041	chr6	35486221	35486930	+	0	NA	exon (NM_003214, exon 2 of 13)	exon (NM_003214, exon 2 of 13)	10504	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
112408	chr19	6198201	6198450	+	0	NA	Intergenic	Intergenic	62658	NM_001289179	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
145611	chr20	44647801	44648550	+	0	NA	intron (NR_136160, intron 1 of 10)	intron (NR_136160, intron 1 of 10)	3524	NM_000022	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
77394	chr15	83065651	83065750	+	0	NA	intron (NM_025238, intron 1 of 7)	MIRc|SINE|MIR	1552	NM_001011885	53339		NM_025238	ENSG00000064726	BTBD1	C15orf1|NS5ATP8	BTB domain containing 1	protein-coding
22556	chr1	222607621	222607880	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-10347	NM_198551	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
120232	chr19	42322921	42323180	+	0	NA	intron (NM_173633, intron 13 of 14)	L2a|LINE|L2	-2585	NM_001271938	1954		NM_001410	ENSG00000105429	MEGF8	C19orf49|CRPT2|EGFL4|SBP1	multiple EGF like domains 8	protein-coding
33658	chr10	119767521	119767780	+	0	NA	intron (NM_001243195, intron 2 of 4)	L1MEg|LINE|L1	41600	NM_014937	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
180401	chr5	10344471	10344630	+	0	NA	Intergenic	AluSz|SINE|Alu	-9145	NM_005885	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
44502	chr11	106060921	106061180	+	0	NA	intron (NM_152433, intron 1 of 2)	L1P3|LINE|L1	16297	NM_198439	143879		NM_152433	ENSG00000182359	KBTBD3	BKLHD3	kelch repeat and BTB domain containing 3	protein-coding
231205	chr9	129945301	129946050	+	0	NA	intron (NM_001363755, intron 6 of 15)	intron (NM_001363755, intron 6 of 15)	76070	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
21152	chr1	203691951	203692250	+	0	NA	intron (NM_001365783, intron 2 of 20)	AluY|SINE|Alu	-37481	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
2690	chr1	10632051	10632350	+	0	NA	Intergenic	Intergenic	157250	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
123164	chr19	52212751	52213250	+	0	NA	exon (NM_014225, exon 6 of 15)	exon (NM_014225, exon 6 of 15)	-9020	NR_106859	102466984		NR_106859	ENSG00000274380	MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
161328	chr3	39447751	39448150	+	0	NA	Intergenic	Intergenic	-19730	NM_001278323	4336		NM_182935	ENSG00000168314	MOBP	-	myelin associated oligodendrocyte basic protein	protein-coding
172202	chr4	1283051	1283350	+	0	NA	Intergenic	Intergenic	-6691	NM_005882	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
217037	chr8	23252021	23252330	+	0	NA	intron (NM_001363183, intron 2 of 8)	L1ME4a|LINE|L1	5534	NM_001317899	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
169277	chr3	158097901	158099300	+	0	NA	intron (NM_003030, intron 5 of 5)	intron (NM_003030, intron 5 of 5)	7563	NM_006884	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
8481	chr1	40808601	40808800	+	0	NA	intron (NM_172163, intron 1 of 12)	L2|LINE|L2	24913	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
111884	chr19	4661171	4661330	+	0	NA	intron (NM_019107, intron 3 of 5)	AluSx1|SINE|Alu	9092	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
8366	chr1	40316201	40317850	+	0	NA	intron (NM_001852, intron 1 of 31)	CpG	261	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
176043	chr4	82376171	82376330	+	0	NA	Intergenic	AluJb|SINE|Alu	-2254	NM_031369	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
115690	chr19	16196751	16196850	+	0	NA	Intergenic	AluSx|SINE|Alu	-1111	NM_032493	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
155610	chr22	38841251	38841550	+	0	NA	intron (NM_014293, intron 1 of 4)	intron (NM_014293, intron 1 of 4)	2628	NM_014293	23467		NM_014293	ENSG00000221890	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
227357	chr9	89475971	89476130	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	3840	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
89591	chr16	89279251	89279430	+	0	NA	exon (NM_001256183, exon 9 of 13)	exon (NM_001256183, exon 9 of 13)	-16788	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
215196	chr7	155788351	155788780	+	0	NA	Intergenic	Intergenic	20598	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
234860	chrX	25004501	25004880	+	0	NA	exon (NM_139058, exon 5 of 5)	exon (NM_139058, exon 5 of 5)	11275	NM_139058	170302		NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
66721	chr14	64447751	64448580	+	0	NA	TTS (NM_001304508)	TTS (NM_001304508)	-17334	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
47950	chr12	6850071	6850230	+	0	NA	intron (NR_123727, intron 3 of 5)	AluJb|SINE|Alu	1136	NR_123727	83461		NM_031299	ENSG00000111665	CDCA3	GRCC8|TOME-1|TOME1	cell division cycle associated 3	protein-coding
24381	chr1	241706751	241707500	+	0	NA	intron (NM_001367482, intron 8 of 27)	MER102c|DNA|hAT-Charlie	54844	NM_001367482	128025		NM_144625	ENSG00000162843	WDR64	-	WD repeat domain 64	protein-coding
20655	chr1	200131521	200132150	+	0	NA	intron (NM_205860, intron 7 of 7)	intron (NM_205860, intron 7 of 7)	89010	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
104956	chr17	81960671	81960880	+	0	NA	exon (NM_178493, exon 1 of 11)	exon (NM_178493, exon 1 of 11)	412	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
65484	chr14	51869351	51870030	+	0	NA	intron (NM_001243774, intron 1 of 2)	AluJb|SINE|Alu	9078	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
108016	chr18	58757621	58757880	+	0	NA	Intergenic	MER77|LTR|ERVL	-56130	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
143070	chr20	21518621	21519080	+	0	NA	Intergenic	Intergenic	-4786	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
191662	chr6	13431921	13432200	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	-23923	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
31568	chr10	97323251	97323680	+	0	NA	Intergenic	Intergenic	4194	NM_005479	10023		NM_005479	ENSG00000165879	FRAT1	-	FRAT regulator of WNT signaling pathway 1	protein-coding
218830	chr8	59180701	59181100	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	61690	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
167157	chr3	128061921	128062350	+	0	NA	intron (NM_013336, intron 7 of 11)	intron (NM_013336, intron 7 of 11)	9698	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
204100	chr7	2121771	2122130	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-32898	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
53352	chr12	64650071	64650750	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSx3|SINE|Alu	-27805	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52832	chr12	57062421	57063150	+	0	NA	intron (NM_015257, intron 6 of 7)	AluSz|SINE|Alu	-11587	NM_001256041	4640		NM_005379	ENSG00000166866	MYO1A	BBMI|DFNA48|MIHC|MYHL	myosin IA	protein-coding
36002	chr11	2894471	2894650	+	0	NA	intron (NR_169305, intron 2 of 2)	AluSz6|SINE|Alu	-5131	NM_183233	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
37145	chr11	13486271	13486430	+	0	NA	Intergenic	Intergenic	9647	NM_000315	5741		NM_000315	ENSG00000152266	PTH	FIH1|PTH1	parathyroid hormone	protein-coding
101086	chr17	64925921	64926880	+	0	NA	Intergenic	AluJb|SINE|Alu	-6909	NM_001303255	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
8155	chr1	39412221	39412480	+	0	NA	exon (NM_015038, exon 1 of 1)	exon (NM_015038, exon 1 of 1)	3277	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
104606	chr17	81412701	81414530	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-12837	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
35731	chr11	2004921	2005330	+	0	NA	Intergenic	Intergenic	-3659	NR_131224	283120		NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2	H19 imprinted maternally expressed transcript	ncRNA
176349	chr4	88378371	88379500	+	0	NA	promoter-TSS (NM_001165136)	promoter-TSS (NM_001165136)	83	NM_001165136	55008		NM_017912	ENSG00000138642	HERC6	-	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein-coding
31739	chr10	97759171	97759980	+	0	NA	3' UTR (NM_001174122, exon 9 of 9)	3' UTR (NM_001174122, exon 9 of 9)	12424	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
30973	chr10	87879101	87879300	+	0	NA	intron (NM_001304717, intron 2 of 9)	intron (NM_001304717, intron 2 of 9)	15575	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
90203	chr17	419191	420300	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-5722	NR_136407	105371430		NR_136407	ENSG00000241525	LOC105371430	-	uncharacterized LOC105371430	ncRNA
166747	chr3	122066351	122066680	+	0	NA	intron (NM_001206925, intron 1 of 5)	MIRb|SINE|MIR	11153	NM_175862	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
153071	chr22	23305721	23306380	+	0	NA	intron (NM_004327, intron 16 of 22)	intron (NM_004327, intron 16 of 22)	-20566	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
55766	chr12	108563301	108564050	+	0	NA	intron (NM_213595, intron 1 of 4)	intron (NM_213595, intron 1 of 4)	1079	NM_213595	23479		NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
215168	chr7	155660051	155660550	+	0	NA	intron (NM_053043, intron 1 of 17)	AluJr|SINE|Alu	15639	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
139793	chr2	230261301	230261500	+	0	NA	intron (NM_001278453, intron 9 of 23)	L1PB1|LINE|L1	35664	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
221128	chr8	118201201	118201400	+	0	NA	intron (NM_001101676, intron 4 of 4)	intron (NM_001101676, intron 4 of 4)	-89474	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
136590	chr2	178396821	178397500	+	0	NA	3' UTR (NM_032523, exon 25 of 25)	3' UTR (NM_032523, exon 25 of 25)	-16499	NR_110205	101927027		NR_110204	ENSG00000223960	CHROMR	CHROME|PRKRA-AS1	cholesterol induced regulator of metabolism RNA	ncRNA
6680	chr1	29140971	29141130	+	0	NA	Intergenic	AluSx|SINE|Alu	-17147	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
91398	chr17	4635921	4636180	+	0	NA	intron (NM_001140, intron 7 of 13)	intron (NM_001140, intron 7 of 13)	5628	NM_001140	246		NM_001140	ENSG00000161905	ALOX15	12-LOX|15-LOX|15-LOX-1|LOG15	arachidonate 15-lipoxygenase	protein-coding
34286	chr10	131919571	131919730	+	0	NA	intron (NM_001291310, intron 3 of 9)	intron (NM_001291310, intron 3 of 9)	18642	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
185667	chr5	131618451	131618550	+	0	NA	intron (NM_016340, intron 1 of 27)	AluSz|SINE|Alu	16729	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
106403	chr18	13453721	13453980	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-6097	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
87257	chr16	69796301	69796800	+	0	NA	intron (NM_001270455, intron 2 of 8)	MER47B|DNA|TcMar-Tigger	34218	NM_001270454	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
198578	chr6	107487921	107488180	+	0	NA	Intergenic	Intergenic	-2067	NM_018013	55084		NM_018013	ENSG00000112320	SOBP	JXC1|MRAMS	sine oculis binding protein homolog	protein-coding
23464	chr1	228557851	228558300	+	0	NA	Intergenic	AluY|SINE|Alu	-45787	NM_001287262	100129094		NM_001287262		BTNL10P	BTN4|BTNL10|BUTR1	butyrophilin like 10, pseudogene	pseudo
217210	chr8	26385471	26385630	+	0	NA	intron (NM_004331, intron 1 of 5)	AluSx1|SINE|Alu	2496	NM_004331	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
26983	chr10	26777421	26777880	+	0	NA	intron (NR_145410, intron 2 of 11)	AluJb|SINE|Alu	79949	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
207494	chr7	44746771	44747130	+	0	NA	Intergenic	L2a|LINE|L2	-1616	NM_001300959	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
58480	chr12	132149451	132149900	+	0	NA	intron (NM_024078, intron 9 of 14)	CpG-6292	5218	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
110707	chr19	2302501	2303680	+	0	NA	intron (NM_001101391, intron 1 of 1)	L1MB7|LINE|L1	5064	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
29610	chr10	71756621	71757900	+	0	NA	intron (NM_022153, intron 3 of 6)	intron (NM_022153, intron 3 of 6)	16260	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
78271	chr15	90856151	90857130	+	0	NA	Intergenic	Intergenic	-11948	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
139694	chr2	227463471	227463980	+	0	NA	Intergenic	Intergenic	-8407	NR_049888	100847081		NR_049888	ENSG00000284092	MIR5703	mir-5703	microRNA 5703	ncRNA
123505	chr19	54209021	54209300	+	0	NA	Intergenic	Intergenic	8302	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
138305	chr2	203733301	203733700	+	0	NA	intron (NM_001243078, intron 2 of 2)	L2|LINE|L2	26861	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
34073	chr10	124992401	124992980	+	0	NA	intron (NM_022802, intron 8 of 8)	intron (NM_022802, intron 8 of 8)	13328	NM_001363508	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
162059	chr3	46845521	46847330	+	0	NA	Intergenic	CpG	-12330	NR_160554	339906		NM_182702	ENSG00000293419	PRSS42P	PRSS42|TESSP2	serine protease 42, pseudogene	pseudo
210135	chr7	98215451	98215750	+	0	NA	TTS (NM_177455)	TTS (NM_177455)	4161	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
222153	chr8	132725671	132725850	+	0	NA	intron (NM_001145153, intron 5 of 8)	L2b|LINE|L2	34822	NM_001382396	137835		NM_144649	ENSG00000165071	TMEM71	-	transmembrane protein 71	protein-coding
4292	chr1	19917801	19918400	+	0	NA	Intergenic	Intergenic	5517	NM_014589	30814		NM_014589	ENSG00000188784	PLA2G2E	GIIE sPLA2|sPLA2-IIE	phospholipase A2 group IIE	protein-coding
237315	chrX	118347751	118348480	+	0	NA	intron (NM_001184966, intron 1 of 17)	intron (NM_001184966, intron 1 of 17)	2009	NM_001184965	54521		NM_019045	ENSG00000131725	WDR44	RAB11BP|RPH11|SYM-4	WD repeat domain 44	protein-coding
232950	chr9	136943721	136945350	+	0	NA	promoter-TSS (NM_000606)	promoter-TSS (NM_000606)	203	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
77024	chr15	78640621	78641280	+	0	NA	intron (NM_000750, intron 1 of 5)	CpG	260	NM_001256567	1143		NM_000750	ENSG00000117971	CHRNB4	-	cholinergic receptor nicotinic beta 4 subunit	protein-coding
17506	chr1	156742521	156742980	+	0	NA	non-coding (NR_135008, exon 7 of 7)	non-coding (NR_135008, exon 7 of 7)	-1662	NM_145729	79590		NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24|uL24m	mitochondrial ribosomal protein L24	protein-coding
13704	chr1	116761701	116762230	+	0	NA	intron (NM_001767, intron 3 of 4)	AluJr|SINE|Alu	7535	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
166592	chr3	119098571	119098730	+	0	NA	intron (NM_152538, intron 3 of 8)	intron (NM_152538, intron 3 of 8)	47370	NM_001353322	152404		NM_152538	ENSG00000144847	IGSF11	BT-IgSF|BTIGSF|CT119|CXADRL1|Igsf13|VSIG3	immunoglobulin superfamily member 11	protein-coding
61242	chr13	49935751	49937150	+	0	NA	promoter-TSS (NR_023351)	promoter-TSS (NR_023351)	51	NM_001127482	57213		NM_020456	ENSG00000123178	SPRYD7	C13orf1|CLLD6	SPRY domain containing 7	protein-coding
203445	chr7	367421	367680	+	0	NA	Intergenic	Intergenic	-11875	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
191916	chr6	15445051	15445150	+	0	NA	intron (NM_001267040, intron 3 of 17)	intron (NM_001267040, intron 3 of 17)	196245	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
87777	chr16	75402901	75403230	+	0	NA	intron (NM_006324, intron 4 of 6)	intron (NM_006324, intron 4 of 6)	30438	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
109388	chr19	658021	658630	+	0	NA	intron (NM_194460, intron 1 of 8)	intron (NM_194460, intron 1 of 8)	4889	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
187920	chr5	148851901	148852100	+	0	NA	Intergenic	Intergenic	25389	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
149113	chr21	17598471	17598780	+	0	NA	exon (NM_006806, exon 4 of 5)	exon (NM_006806, exon 4 of 5)	-13061	NR_149073	110806272		NR_149073	ENSG00000280594	BTG3-AS1	ASBEL	BTG3 antisense RNA 1	ncRNA
95897	chr17	38889901	38890940	+	0	NA	non-coding (NR_073384, exon 3 of 8)	non-coding (NR_073384, exon 3 of 8)	20362	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
123932	chr19	55371771	55371930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1387	NM_000641	3589		NM_000641	ENSG00000095752	IL11	AGIF|IL-11	interleukin 11	protein-coding
201767	chr6	149950421	149951000	+	0	NA	Intergenic	Intergenic	8696	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
131769	chr2	98476351	98476750	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	30540	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
235498	chrX	47141721	47142130	+	0	NA	TTS (NM_019056)	TTS (NM_019056)	2777	NM_001135998	54539		NM_019056	ENSG00000147123	NDUFB11	CI-ESSS|ESSS|MC1DN30|NP17.3|Np15|P17.3	NADH:ubiquinone oxidoreductase subunit B11	protein-coding
198986	chr6	110901251	110901350	+	0	NA	Intergenic	MIR|SINE|MIR	26516	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
215072	chr7	154052371	154052730	+	0	NA	5' UTR (NM_001290253, exon 1 of 6)	5' UTR (NM_001290253, exon 1 of 6)	152	NM_001290253	1804		NM_001936	ENSG00000130226	DPP6	DPL1|DPPX|MRD33|VF2	dipeptidyl peptidase like 6	protein-coding
232600	chr9	136425121	136425780	+	0	NA	Intergenic	AluSp|SINE|Alu	14395	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
229740	chr9	124965171	124966350	+	0	NA	intron (NM_173690, intron 18 of 18)	Tigger2|DNA|TcMar-Tigger	-24677	NM_002077	2800		NM_002077	ENSG00000136935	GOLGA1	golgin-97	golgin A1	protein-coding
226543	chr9	72350721	72352230	+	0	NA	TTS (NM_006007)	TTS (NM_006007)	13081	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
66130	chr14	60162321	60163380	+	0	NA	intron (NM_001322280, intron 1 of 6)	MER106B|DNA|hAT-Charlie	2548	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
60793	chr13	45322151	45322450	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	14147	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
132106	chr2	101386571	101388100	+	0	NA	exon (NM_153836, exon 1 of 4)	exon (NM_153836, exon 1 of 4)	168	NM_153836	200407		NM_153836	ENSG00000175874	CREG2	-	cellular repressor of E1A stimulated genes 2	protein-coding
118200	chr19	35139451	35139750	+	0	NA	promoter-TSS (NM_001278718)	promoter-TSS (NM_001278718)	-34	NM_001278718	5348		NM_005031	ENSG00000266964	FXYD1	PLM	FXYD domain containing ion transport regulator 1	protein-coding
152452	chr22	20610871	20611030	+	0	NA	Intergenic	Intergenic	-78605	NR_024592	266697		NR_024592		POM121L4P	POM121L1|POM121L1P	POM121 transmembrane nucleoporin like 4, pseudogene	pseudo
144925	chr20	36988421	36988900	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-36952	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
10299	chr1	64853551	64853850	+	0	NA	intron (NM_001321857, intron 11 of 24)	MIRb|SINE|MIR	108625	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
78751	chr15	98952221	98952680	+	0	NA	intron (NM_000875, intron 20 of 20)	intron (NM_000875, intron 20 of 20)	53206	NM_001102612	145814		NM_001102612	ENSG00000183571	PGPEP1L	-	pyroglutamyl-peptidase I like	protein-coding
112064	chr19	5155201	5155400	+	0	NA	Intergenic	Intergenic	185512	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
102898	chr17	76539001	76539250	+	0	NA	promoter-TSS (NM_001077620)	promoter-TSS (NM_001077620)	-919	NM_001077620	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
111011	chr19	3051851	3051950	+	0	NA	intron (NR_031672, intron 2 of 2).3	AluJb|SINE|Alu	-4265	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
151091	chr21	44837521	44837780	+	0	NA	Intergenic	Intergenic	-19521	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
201510	chr6	149060051	149061130	+	0	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-27929	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
67895	chr14	74495321	74495800	+	0	NA	TTS (NM_001272007)	TTS (NM_001272007)	1795	NM_194279	122961		NM_194279	ENSG00000165898	ISCA2	HBLD1|ISA2|MMDS4|c14_5557	iron-sulfur cluster assembly 2	protein-coding
163133	chr3	50135321	50135580	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-19608	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
67401	chr14	69794801	69795000	+	0	NA	intron (NM_003049, intron 1 of 4)	intron (NM_003049, intron 1 of 4)	2341	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
105795	chr18	2908471	2909630	+	0	NA	intron (NM_032048, intron 6 of 7)	(GCCTCT)n|Simple_repeat|Simple_repeat	37573	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
138667	chr2	212968371	212968530	+	0	NA	Intergenic	Intergenic	-42114	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
20214	chr1	193131621	193131950	+	0	NA	intron (NM_024529, intron 3 of 16)	L2a|LINE|L2	-4718	NR_031691	100302163		NR_031691	ENSG00000221680	MIR1278	MIRN1278|hsa-mir-1278|mir-1278	microRNA 1278	ncRNA
223039	chr8	143362501	143362980	+	0	NA	Intergenic	Intergenic	-2763	NM_001258447	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
146167	chr20	48733051	48733750	+	0	NA	intron (NM_020820, intron 4 of 39)	MLT1K|LTR|ERVL-MaLR	94599	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
208669	chr7	73186671	73186830	+	0	NA	intron (NR_002206, intron 8 of 23)	intron (NR_002206, intron 8 of 23)	-31301	NM_001382504	643862		NM_001382504	ENSG00000274570	SPDYE10	SPDYE10P	speedy/RINGO cell cycle regulator family member E10	protein-coding
140388	chr2	233068351	233069130	+	0	NA	intron (NM_001017915, intron 1 of 26).2	intron (NM_001017915, intron 1 of 26).2	8398	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
159438	chr3	13654801	13655850	+	0	NA	intron (NR_027103, intron 1 of 5)	CpG	4604	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
213359	chr7	135664221	135664680	+	0	NA	intron (NM_001130929, intron 1 of 2)	AluJr|SINE|Alu	1936	NM_001130929	647087		NM_001130929	ENSG00000243317	STMP1	C7orf73|Mm47|Mtlbn|PL-5283	short transmembrane mitochondrial protein 1	protein-coding
100113	chr17	58332101	58334430	+	0	NA	intron (NR_038413, intron 1 of 3)	intron (NR_038413, intron 1 of 3)	-1947	NR_029683	406934		NR_029683	ENSG00000284353	MIR142	MIRN142|mir-142	microRNA 142	ncRNA
41162	chr11	65608051	65608780	+	0	NA	exon (NM_002419, exon 2 of 10)	exon (NM_002419, exon 2 of 10)	5806	NM_002419	4296		NM_002419	ENSG00000173327	MAP3K11	MEKK11|MLK-3|MLK3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding
28907	chr10	63145951	63146250	+	0	NA	intron (NM_001282405, intron 1 of 2)	intron (NM_001282405, intron 1 of 2)	12772	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
42566	chr11	71926951	71927430	+	0	NA	intron (NM_001375848, intron 1 of 6)	AluJb|SINE|Alu	1269	NM_001375848	100133315		NM_001375847	ENSG00000254469	XNDC1N	-	XRCC1 N-terminal domain containing 1, N-terminal like	protein-coding
189810	chr5	176960771	176960930	+	0	NA	intron (NM_001317961, intron 6 of 14)	SVA_F|Retroposon|SVA	45592	NM_016290	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
133748	chr2	127510771	127510930	+	0	NA	intron (NM_017969, intron 2 of 13)	MER5A1|DNA|hAT-Charlie	15639	NM_017969	55677		NM_017969	ENSG00000163166	IWS1	-	interacts with SUPT6H, CTD assembly factor 1	protein-coding
72867	chr15	40275921	40277130	+	0	NA	3' UTR (NM_001128629, exon 10 of 10)	3' UTR (NM_001128629, exon 10 of 10)	6061	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
212267	chr7	123494051	123494450	+	0	NA	intron (NM_178827, intron 7 of 12)	intron (NM_178827, intron 7 of 12)	38698	NM_001321293	154865		NM_178827	ENSG00000164675	IQUB	TRS4	IQ motif and ubiquitin domain containing	protein-coding
185305	chr5	126731051	126731450	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	45236	NR_134485	102723557		NR_134485	ENSG00000251072	LMNB1-DT	-	LMNB1 divergent transcript	ncRNA
207006	chr7	38354281	38355100	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	13113	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
192443	chr6	24899451	24900500	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	10759	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
67860	chr14	74240121	74240400	+	0	NA	intron (NM_182894, intron 1 of 4)	CpG	811	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
118081	chr19	34361751	34362300	+	0	NA	Intergenic	AluSc5|SINE|Alu	-2715	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
208580	chr7	72881071	72881430	+	0	NA	intron (NM_001367610, intron 2 of 15)	AluSz6|SINE|Alu	1893	NM_001257190	9883		NM_014833	ENSG00000196313	POM121	P145|POM121A	POM121 transmembrane nucleoporin	protein-coding
214563	chr7	150570251	150570350	+	0	NA	intron (NM_001363532, intron 2 of 2)	intron (NM_001363532, intron 2 of 2)	2910	NM_018326	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
230184	chr9	127794201	127794780	+	0	NA	Intergenic	Intergenic	-8368	NM_001288803	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
115979	chr19	17068521	17068780	+	0	NA	intron (NM_001011699, intron 3 of 10)	AluJb|SINE|Alu	6802	NM_033417	93323		NM_033417	ENSG00000131351	HAUS8	DGT4|HICE1|NY-SAR-48	HAUS augmin like complex subunit 8	protein-coding
16920	chr1	155894971	155895530	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	15668	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
29041	chr10	67753671	67754030	+	0	NA	Intergenic	L1PA10|LINE|L1	-57655	NM_013266	29119		NM_013266	ENSG00000183230	CTNNA3	ARVD13|VR22	catenin alpha 3	protein-coding
3472	chr1	15957351	15957930	+	0	NA	intron (NM_001324138, intron 2 of 14)	L2a|LINE|L2	18461	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
81194	chr16	4483701	4483900	+	0	NA	intron (NM_001127204, intron 2 of 6).2	AluSz|SINE|Alu	7402	NM_002134	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
141090	chr2	238367321	238367600	+	0	NA	intron (NM_001139490, intron 13 of 14)	intron (NM_001139490, intron 13 of 14)	46916	NM_001139490	26146		NM_015650	ENSG00000204104	TRAF3IP1	CFAP116|FAP116|IFT54|MIP-T3|MIPT3|SLSN9	TRAF3 interacting protein 1	protein-coding
211300	chr7	103296901	103298180	+	0	NA	exon (NM_004279, exon 1 of 13)	exon (NM_004279, exon 1 of 13)	105	NM_004279	9512		NM_004279	ENSG00000105819	PMPCB	Beta-MPP|MAS1|MPP11|MPPB|MPPP52|P-52	peptidase, mitochondrial processing subunit beta	protein-coding
58266	chr12	128822151	128822480	+	0	NA	intron (NM_145648, intron 1 of 7)	intron (NM_145648, intron 1 of 7)	1643	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
27960	chr10	42178371	42178530	+	0	NA	Intergenic	(TTAT)n|Simple_repeat|Simple_repeat	189595	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
209218	chr7	75487621	75488230	+	0	NA	Intergenic	MER4D|LTR|ERV1	-1626	NR_160303	100101267		NM_001099415	ENSG00000272391	POM121C	POM121-2	POM121 transmembrane nucleoporin C	protein-coding
90726	chr17	1977301	1978200	+	0	NA	intron (NM_178568, intron 1 of 1)	intron (NM_178568, intron 1 of 1)	-39966	NR_135642	105371485		NR_135642	ENSG00000228133	LOC105371485	-	uncharacterized LOC105371485	ncRNA
91028	chr17	2824801	2825000	+	0	NA	intron (NM_001100398, intron 2 of 23)	Tigger16a|DNA|TcMar-Tigger	28462	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
213053	chr7	131061101	131062450	+	0	NA	intron (NR_109852, intron 2 of 5)	AluSx1|SINE|Alu	45255	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
40665	chr11	64750501	64751150	+	0	NA	intron (NM_001164716, intron 14 of 17)	intron (NM_001164716, intron 14 of 17)	-5369	NM_153819	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
238533	chrX	153726101	153726300	+	0	NA	intron (NM_000033, intron 1 of 9)	CpG-30165	1344	NM_000033	215		NM_000033	ENSG00000101986	ABCD1	ABC42|ALD|ALDP|AMN	ATP binding cassette subfamily D member 1	protein-coding
223333	chr8	143826401	143826650	+	0	NA	intron (NM_078480, intron 1 of 11)	AluSz|SINE|Alu	2516	NM_001362896	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
75948	chr15	70413151	70413250	+	0	NA	Intergenic	Intergenic	92728	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
74033	chr15	52241501	52242130	+	0	NA	intron (NM_018728, intron 20 of 40)	FRAM|SINE|Alu	35385	NR_031670	100302202		NR_031670	ENSG00000221052	MIR1266	MIRN1266|hsa-mir-1266|mir-1266	microRNA 1266	ncRNA
98332	chr17	46268551	46268650	+	0	NA	Intergenic	Intergenic	-26531	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
34108	chr10	125999371	125999730	+	0	NA	intron (NM_145235, intron 6 of 10)	intron (NM_145235, intron 6 of 10)	-26277	NR_102707	101410540		NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
64237	chr14	23094051	23096080	+	0	NA	promoter-TSS (NM_017924)	promoter-TSS (NM_017924)	-440	NM_017924	55017		NM_017924	ENSG00000179933	C14orf119	-	chromosome 14 open reading frame 119	protein-coding
38231	chr11	36451201	36451650	+	0	NA	intron (NM_001160167, intron 8 of 8)	intron (NM_001160167, intron 8 of 8)	50428	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
34460	chr10	132442771	132443000	+	0	NA	Intergenic	Intergenic	-2304	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
137285	chr2	195533971	195534780	+	0	NA	Intergenic	Intergenic	-122583	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
101534	chr17	67863751	67864050	+	0	NA	intron (NM_182641, intron 2 of 27)	intron (NM_182641, intron 2 of 27)	38397	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
149736	chr21	34375021	34375980	+	0	NA	promoter-TSS (NM_001313692)	promoter-TSS (NM_001313692)	-7	NM_001376899	54065		NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B|SMIM11A|SMIM11B	small integral membrane protein 11	protein-coding
227851	chr9	93565301	93565630	+	0	NA	3' UTR (NM_014612, exon 18 of 18)	3' UTR (NM_014612, exon 18 of 18)	-11119	NM_005392	5253		NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding
217804	chr8	33571501	33571900	+	0	NA	Intergenic	AluY|SINE|Alu	-4572	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
27995	chr10	43126851	43127250	+	0	NA	3' UTR (NM_020630, exon 19 of 19)	3' UTR (NM_020630, exon 19 of 19)	-11395	NR_135077	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
40690	chr11	64772121	64773380	+	0	NA	intron (NM_001346410, intron 2 of 11)	intron (NM_001346410, intron 2 of 11)	5011	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
114637	chr19	12997101	12997930	+	0	NA	intron (NM_001365902, intron 1 of 10)	intron (NM_001365902, intron 1 of 10)	2040	NM_001365902	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
156813	chr22	41928751	41929430	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-2284	NM_052945	115650		NM_052945	ENSG00000159958	TNFRSF13C	BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin	TNF receptor superfamily member 13C	protein-coding
116893	chr19	18705471	18706030	+	0	NA	intron (NM_015321, intron 1 of 13)	L1MB4|LINE|L1	22070	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
4963	chr1	24112151	24112780	+	0	NA	promoter-TSS (NM_152372)	promoter-TSS (NM_152372)	-330	NM_152372	127294		NM_152372	ENSG00000142661	MYOM3	-	myomesin 3	protein-coding
68807	chr14	91249671	91250610	+	0	NA	intron (NM_001348437, intron 1 of 2)	intron (NM_001348437, intron 1 of 2)	3740	NM_001348437	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
88385	chr16	84611571	84612500	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	6043	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
39864	chr11	62426651	62427150	+	0	NA	Intergenic	Intergenic	7867	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
34495	chr10	132547621	132548080	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	10063	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
184409	chr5	98916001	98916400	+	0	NA	intron (NR_157078, intron 2 of 36)	AluSq|SINE|Alu	-12362	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
34801	chr11	268601	270080	+	0	NA	Intergenic	L1MB4|LINE|L1	-9067	NM_001276700	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
186111	chr5	134134771	134135000	+	0	NA	intron (NM_001366502, intron 1 of 7)	intron (NM_001366502, intron 1 of 7)	11267	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
20722	chr1	200877771	200878780	+	0	NA	Intergenic	Intergenic	5294	NM_005298	2848		NM_005298	ENSG00000170128	GPR25	-	G protein-coupled receptor 25	protein-coding
163716	chr3	52291221	52292250	+	0	NA	intron (NR_026702, intron 3 of 4)	intron (NR_026702, intron 3 of 4)	-2002	NR_046719	100874110		NR_046719		GLYCTK-AS1	-	GLYCTK antisense RNA 1	ncRNA
11077	chr1	85240151	85240830	+	0	NA	Intergenic	Intergenic	19172	NR_024113	148423		NM_198077	ENSG00000162642	C1orf52	gm117	chromosome 1 open reading frame 52	protein-coding
43454	chr11	77994001	77995300	+	0	NA	promoter-TSS (NM_033547)	promoter-TSS (NM_033547)	18	NM_033547	92105		NM_033547	ENSG00000149262	INTS4	INT4|MST093	integrator complex subunit 4	protein-coding
80508	chr16	2745201	2745600	+	0	NA	promoter-TSS (NR_027274)	promoter-TSS (NR_027274)	-603	NR_027274	100128788		NR_027274	ENSG00000205913	SRRM2-AS1	-	SRRM2 antisense RNA 1	ncRNA
71779	chr15	21344751	21345050	+	0	NA	Intergenic	CpG	29068	NR_024387	646243		NR_024387		CXADRP2	-	CXADR pseudogene 2	pseudo
176376	chr4	88595601	88596200	+	0	NA	intron (NM_001375481, intron 2 of 23)	AluYe5|SINE|Alu	3420	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
75771	chr15	68730501	68730700	+	0	NA	Intergenic	Intergenic	71325	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
235466	chrX	46579521	46580180	+	0	NA	intron (NM_019886, intron 1 of 1)	AluJr|SINE|Alu	6085	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
169026	chr3	152469021	152470650	+	0	NA	Intergenic	L2c|LINE|L2	-128845	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
70933	chr14	104395451	104395750	+	0	NA	Intergenic	AluJb|SINE|Alu	172016	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
28336	chr10	46596721	46596980	+	0	NA	intron (NR_155740, intron 1 of 1)	LTR78|LTR|ERV1	1295	NR_155739	101927699		NR_155739		SYT15-AS1	-	SYT15 antisense RNA 1	ncRNA
100736	chr17	63913401	63914000	+	0	NA	Intergenic	Intergenic	-2442	NM_022579	1444		NM_001318	ENSG00000204414	CSHL1	CS-5|CSHP1|CSL|GHB4|hCS-L	chorionic somatomammotropin hormone like 1	protein-coding
59693	chr13	29558251	29558550	+	0	NA	intron (NM_003045, intron 1 of 12)	intron (NM_003045, intron 1 of 12)	37288	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
159867	chr3	16801201	16801800	+	0	NA	Intergenic	Intergenic	-83455	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
43232	chr11	75449421	75450080	+	0	NA	intron (NM_030792, intron 7 of 16)	MIR3|SINE|MIR	2577	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
102866	chr17	76506121	76507030	+	0	NA	Intergenic	Intergenic	-5148	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
35120	chr11	690001	690700	+	0	NA	intron (NM_001367390, intron 2 of 11)	(GGGGA)n|Simple_repeat|Simple_repeat	4872	NM_021008	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
6037	chr1	27116751	27117450	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	38025	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
131835	chr2	98661021	98661400	+	0	NA	intron (NM_001160154, intron 2 of 12)	L1M2|LINE|L1	2263	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
226270	chr9	68270751	68270850	+	0	NA	intron (NM_001378117, intron 8 of 11)	AluY|SINE|Alu	28817	NM_201453	445571		NM_201453	ENSG00000196873	ZNG1C	CBWD3|bA561O23.1	Zn regulated GTPase metalloprotein activator 1C	protein-coding
220802	chr8	102676151	102676850	+	0	NA	intron (NR_160672, intron 3 of 4)	intron (NR_160672, intron 3 of 4)	20252	NR_160673	101927245		NR_160672	ENSG00000283959	LOC101927245	-	uncharacterized LOC101927245	ncRNA
227965	chr9	94952451	94952950	+	0	NA	intron (NM_001193329, intron 6 of 15)	intron (NM_001193329, intron 6 of 15)	-7146	NR_147614	101928119		NR_147613		LOC101928119	-	uncharacterized LOC101928119	ncRNA
235775	chrX	49073501	49074730	+	0	NA	promoter-TSS (NM_007213)	promoter-TSS (NM_007213)	-113	NM_007213	11230		NM_007213	ENSG00000243279	PRAF2	JM4|Yip6a	PRA1 domain family member 2	protein-coding
58982	chr13	19954121	19954630	+	0	NA	Intergenic	AluYc|SINE|Alu	-3048	NM_001353164	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
90522	chr17	1472821	1473430	+	0	NA	intron (NM_001080779, intron 17 of 31)	AluSx1|SINE|Alu	12276	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
227300	chr9	89415101	89415500	+	0	NA	intron (NM_001371201, intron 2 of 18)	intron (NM_001371201, intron 2 of 18)	64590	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
22272	chr1	212701921	212702320	+	0	NA	Intergenic	AluJo|SINE|Alu	-2280	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
87531	chr16	71901901	71902550	+	0	NA	intron (NM_001270979, intron 1 of 5)	L1MEf|LINE|L1	6694	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
80346	chr16	2486521	2487880	+	0	NA	intron (NM_001199107, intron 1 of 7)	intron (NM_001199107, intron 1 of 7)	12073	NM_020705	57465		NM_020705	ENSG00000162065	TBC1D24	DEE16|DFNA65|DFNB86|DOORS|EIEE16|EIM|EPRPDC|FIME|TLDC6	TBC1 domain family member 24	protein-coding
222488	chr8	140454121	140454380	+	0	NA	intron (NM_031466, intron 1 of 22)	AluSz|SINE|Alu	3494	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
233086	chr9	137104551	137104850	+	0	NA	intron (NM_016219, intron 8 of 12)	L1MB3|LINE|L1	10033	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
149532	chr21	33021401	33021600	+	0	NA	Intergenic	Intergenic	-4435	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
79334	chr16	578851	580030	+	0	NA	intron (NM_004204, intron 7 of 10)	intron (NM_004204, intron 7 of 10)	9472	NM_004204	9091		NM_004204	ENSG00000007541	PIGQ	DEE77|EIEE77|GPI1|GPIBD19|MCAHS4|c407A10.1	phosphatidylinositol glycan anchor biosynthesis class Q	protein-coding
141523	chr2	241223271	241223650	+	0	NA	intron (NM_001370694, intron 22 of 24)	intron (NM_001370694, intron 22 of 24)	34783	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
46605	chr11	128551551	128552280	+	0	NA	intron (NM_001143820, intron 3 of 9)	MER5A|DNA|hAT-Charlie	25773	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
140626	chr2	233449851	233450150	+	0	NA	exon (NM_152879, exon 16 of 30)	exon (NM_152879, exon 16 of 30)	30788	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
222615	chr8	141040301	141040500	+	0	NA	Intergenic	Intergenic	-38321	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
211851	chr7	110835121	110835440	+	0	NA	intron (NM_001350963, intron 5 of 5)	intron (NM_001350963, intron 5 of 5)	-255726	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
185648	chr5	131544521	131544780	+	0	NA	intron (NM_016340, intron 6 of 27)	L1ME1|LINE|L1	90579	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
221804	chr8	127984451	127984750	+	0	NA	intron (NR_003367, intron 4 of 8)	MIRb|SINE|MIR	23967	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
177206	chr4	108370151	108370850	+	0	NA	Intergenic	Intergenic	-186733	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
115997	chr19	17102971	17103600	+	0	NA	intron (NM_004145, intron 2 of 39)	MER74A|LTR|ERVL	11050	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
155917	chr22	39596551	39596850	+	0	NA	intron (NM_001003406, intron 1 of 35)	L2|LINE|L2	25947	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
163512	chr3	51395721	51396180	+	0	NA	TTS (NM_014703)	TTS (NM_014703)	4665	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
86739	chr16	67640451	67640550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4644	NM_001317026	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
97280	chr17	43029951	43030800	+	0	NA	3' UTR (NM_005440, exon 5 of 5)	3' UTR (NM_005440, exon 5 of 5)	5144	NM_005440	8153		NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
72179	chr15	29170751	29170850	+	0	NA	intron (NM_015307, intron 4 of 10)	MLT1A0|LTR|ERVL-MaLR	99022	NM_138704	56160		NM_138704	ENSG00000185115	NSMCE3	HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3	NSE3 homolog, SMC5-SMC6 complex component	protein-coding
32906	chr10	110172801	110173000	+	0	NA	Intergenic	AluSg|SINE|Alu	-20920	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
215147	chr7	155466171	155466330	+	0	NA	Intergenic	CpG	8121	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
3655	chr1	16404501	16405050	+	0	NA	intron (NM_001353349, intron 6 of 10)	AluJb|SINE|Alu	32649	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
81002	chr16	4111801	4112600	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	4242	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
166768	chr3	122383801	122384930	+	0	NA	intron (NM_014367, intron 1 of 4)	intron (NM_014367, intron 1 of 4)	183	NM_014367	26355		NM_014367	ENSG00000114023	FAM162A	C3orf28|E2IG5|HGTD-P	family with sequence similarity 162 member A	protein-coding
170189	chr3	183815151	183816280	+	0	NA	TTS (NM_024871)	TTS (NM_024871)	-5264	NR_046727	100874113		NR_046727		YEATS2-AS1	-	YEATS2 antisense RNA 1	ncRNA
237426	chrX	119653801	119654580	+	0	NA	intron (NM_145799, intron 3 of 10)	intron (NM_145799, intron 3 of 10)	-7342	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
58791	chr12	132764171	132764330	+	0	NA	Intergenic	Intergenic	-2418	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
105478	chr17	83070751	83071230	+	0	NA	Intergenic	Intergenic	-8619	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
196588	chr6	44217121	44217730	+	0	NA	intron (NM_001347931, intron 1 of 1)	intron (NM_001347931, intron 1 of 1)	499	NM_001347931	101929726		NM_001315494	ENSG00000262179	MYMX	CFZS2|MINION|hMINION	myomixer, myoblast fusion factor	protein-coding
100532	chr17	62485901	62486180	+	0	NA	intron (NM_001375269, intron 2 of 20)	AluY|SINE|Alu	4927	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
92276	chr17	8067551	8067850	+	0	NA	Intergenic	Intergenic	20016	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
182456	chr5	62326021	62326330	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	19969	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
20526	chr1	198684571	198685000	+	0	NA	intron (NM_002838, intron 2 of 32)	HAL1|LINE|L1	45745	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
47452	chr12	3751671	3754550	+	0	NA	promoter-TSS (NM_001144958)	promoter-TSS (NM_001144958)	-1	NM_001144958	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
225925	chr9	40583271	40583430	+	0	NA	Intergenic	AluJr|SINE|Alu	83369	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
152627	chr22	21440151	21440250	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	22829	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
197131	chr6	57865051	57865150	+	0	NA	Intergenic	L2a|LINE|L2	71829	NR_132999	375513		NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L	GUSB pseudogene 4	pseudo
47234	chr12	988571	989200	+	0	NA	intron (NM_001297419, intron 1 of 11)	MSTB2|LTR|ERVL-MaLR	1156	NM_001297419	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
178501	chr4	150652671	150652830	+	0	NA	intron (NM_001367550, intron 37 of 56)	MER33|DNA|hAT-Charlie	70599	NM_006439	10586		NM_006439	ENSG00000181541	MAB21L2	MCOPS14|MCSKS14	mab-21 like 2	protein-coding
211965	chr7	112786971	112787130	+	0	NA	intron (NM_022484, intron 1 of 4)	L2b|LINE|L2	3343	NM_022484	64418		NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
232878	chr9	136831701	136832430	+	0	NA	intron (NM_024718, intron 6 of 14)	intron (NM_024718, intron 6 of 14)	1108	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
86568	chr16	67223551	67224680	+	0	NA	intron (NM_001004055, intron 1 of 6)	intron (NM_001004055, intron 1 of 6)	2687	NM_001365159	26231		NM_012163	ENSG00000293507	FBXL9P	FBL9|FBXL9|LRRC29	F-box and leucine rich repeat protein, pseudogene	pseudo
23297	chr1	228067471	228067630	+	0	NA	Intergenic	Intergenic	9000	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
109626	chr19	984021	985200	+	0	NA	intron (NM_001372085, intron 3 of 11)	CpG	265	NM_024100	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
92083	chr17	7551151	7551800	+	0	NA	intron (NM_172089, intron 5 of 10)	intron (NM_172089, intron 5 of 10)	2417	NR_037146	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
142558	chr20	5168671	5169630	+	0	NA	intron (NM_003818, intron 1 of 12)	intron (NM_003818, intron 1 of 12)	42142	NM_003818	8760		NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
209120	chr7	74974101	74974700	+	0	NA	intron (NM_001145064, intron 1 of 8)	intron (NM_001145064, intron 1 of 8)	9695	NM_001145064	729438		NM_001145064	ENSG00000274070	CASTOR2	GATSL1|GATSL2	cytosolic arginine sensor for mTORC1 subunit 2	protein-coding
66844	chr14	64927371	64927530	+	0	NA	intron (NM_001202559, intron 3 of 13)	intron (NM_001202559, intron 3 of 13)	12995	NM_001202558	100529261		NM_001202558	ENSG00000125954	CHURC1-FNTB	FNTB|FTase-beta	CHURC1-FNTB readthrough	protein-coding
161263	chr3	39263821	39264900	+	0	NA	3' UTR (NM_001171172, exon 2 of 2)	3' UTR (NM_001171172, exon 2 of 2)	15676	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
183191	chr5	75715321	75715780	+	0	NA	intron (NM_001099271, intron 1 of 11)	THE1D|LTR|ERVL-MaLR	-1882	NR_149046	441087		NM_001013716		LOC441087	-	uncharacterized LOC441087	ncRNA
166796	chr3	122565571	122565730	+	0	NA	promoter-TSS (NM_031458)	promoter-TSS (NM_031458)	-866	NM_031458	83666		NM_031458	ENSG00000138496	PARP9	ARTD9|BAL|BAL1|MGC:7868	poly(ADP-ribose) polymerase family member 9	protein-coding
60438	chr13	41002371	41002530	+	0	NA	intron (NM_001370329, intron 1 of 9)	AluJr|SINE|Alu	16866	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
172185	chr4	1239101	1240000	+	0	NA	intron (NM_001377186, intron 1 of 8)	intron (NM_001377186, intron 1 of 8)	9178	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
220787	chr8	102627471	102627630	+	0	NA	Intergenic	Intergenic	26414	NR_103759	7071		NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	KLF transcription factor 10	protein-coding
22625	chr1	223639371	223639530	+	0	NA	intron (NM_001143962, intron 2 of 20)	MER57E1|LTR|ERV1	26251	NM_001143962	388743		NM_001143962	ENSG00000203697	CAPN8	nCL-2	calpain 8	protein-coding
185960	chr5	133054221	133054600	+	0	NA	intron (NM_002154, intron 1 of 18)	AluSz|SINE|Alu	2397	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
79653	chr16	1193971	1194130	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	31218	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
238112	chrX	136640451	136640980	+	0	NA	intron (NR_038462, intron 1 of 2)	intron (NR_038462, intron 1 of 2)	1172	NR_038461	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
73022	chr15	40768771	40770380	+	0	NA	promoter-TSS (NM_001130448)	promoter-TSS (NM_001130448)	-405	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
26944	chr10	26503951	26504130	+	0	NA	intron (NM_019043, intron 6 of 14)	intron (NM_019043, intron 6 of 14)	65699	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
17702	chr1	158248051	158248450	+	0	NA	promoter-TSS (NM_001320652)	promoter-TSS (NM_001320652)	-86	NM_001320652	909		NM_001763	ENSG00000158477	CD1A	CD1|FCB6|HTA1|R4|T6	CD1a molecule	protein-coding
171537	chr3	196740801	196742280	+	0	NA	intron (NM_002577, intron 1 of 14)	intron (NM_002577, intron 1 of 14)	1683	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
18813	chr1	167645451	167645980	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	15483	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
4405	chr1	21175801	21177530	+	0	NA	intron (NM_001198801, intron 1 of 34)	CpG	232	NM_001198801	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
231182	chr9	129908001	129908200	+	0	NA	intron (NM_001363755, intron 12 of 15)	AluJb|SINE|Alu	38495	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
164494	chr3	60081621	60082030	+	0	NA	promoter-TSS (NM_001320901)	promoter-TSS (NM_001320901)	-916	NM_001320901	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
110750	chr19	2339971	2340330	+	0	NA	exon (NM_001077238, exon 7 of 15)	exon (NM_001077238, exon 7 of 15)	11466	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
49467	chr12	25130621	25130950	+	0	NA	intron (NR_147910, intron 7 of 11)	intron (NR_147910, intron 7 of 11)	64375	NR_147909	55259		NM_018272	ENSG00000118307	DNAI7	CASC1|CFAP94|LAS1|PPP1R54	dynein axonemal intermediate chain 7	protein-coding
213585	chr7	139378821	139379200	+	0	NA	intron (NM_016019, intron 2 of 9)	intron (NM_016019, intron 2 of 9)	19116	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
168962	chr3	152385271	152385430	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-44360	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
173728	chr4	15965251	15965350	+	0	NA	Intergenic	Intergenic	-2125	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
42762	chr11	72738121	72738380	+	0	NA	intron (NM_001040118, intron 1 of 34)	intron (NM_001040118, intron 1 of 34)	14139	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
196949	chr6	52656401	52656600	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-7901	NR_024405	730101		NR_024403	ENSG00000291006	LOC730101	-	uncharacterized LOC730101	ncRNA
134159	chr2	134237721	134237980	+	0	NA	intron (NM_001371457, intron 1 of 16)	AluSg|SINE|Alu	-16222	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
167100	chr3	127588021	127588300	+	0	NA	promoter-TSS (NR_107016)	promoter-TSS (NR_107016)	-984	NR_107016	102465857		NR_107016	ENSG00000276083	MIR7976	hsa-mir-7976	microRNA 7976	ncRNA
33857	chr10	124388671	124390050	+	0	NA	Intergenic	CpG	29563	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
32337	chr10	102241201	102242600	+	0	NA	promoter-TSS (NM_005029)	promoter-TSS (NM_005029)	-388	NM_005029	5309		NM_005029	ENSG00000107859	PITX3	ASGD1|ASMD|ASOD|CTPP4|CTRCT11|PTX3	paired like homeodomain 3	protein-coding
204157	chr7	2402771	2405100	+	0	NA	intron (NM_018641, intron 1 of 1)	CpG	324	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
17348	chr1	156490201	156491680	+	0	NA	promoter-TSS (NM_001271629)	promoter-TSS (NM_001271629)	-253	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
65443	chr14	51592921	51593600	+	0	NA	intron (NR_047477, intron 1 of 3)	intron (NR_047477, intron 1 of 3)	6692	NR_047477	100874185		NR_047477	ENSG00000258537	FRMD6-AS2	-	FRMD6 antisense RNA 2	ncRNA
127011	chr2	36918401	36918600	+	0	NA	intron (NM_003162, intron 2 of 17)	intron (NM_003162, intron 2 of 17)	48036	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
45836	chr11	119374161	119374550	+	0	NA	intron (NM_004205, intron 1 of 12)	intron (NM_004205, intron 1 of 12)	7335	NM_004205	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
179018	chr4	164976201	164976400	+	0	NA	intron (NM_001012414, intron 2 of 4)	LTR5A|LTR|ERVK	1357	NM_001012414	391712		NM_001012414	ENSG00000183439	TRIM61	RNF35	tripartite motif containing 61	protein-coding
75537	chr15	66698651	66698950	+	0	NA	Intergenic	MIRb|SINE|MIR	-3436	NM_005585	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
218440	chr8	47906371	47906530	+	0	NA	intron (NM_006904, intron 25 of 85)	AluSx1|SINE|Alu	53686	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
103205	chr17	77472301	77473050	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	-2960	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
206821	chr7	37208421	37208880	+	0	NA	intron (NM_014800, intron 13 of 21)	intron (NM_014800, intron 13 of 21)	145018	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
128163	chr2	48555551	48556100	+	0	NA	intron (NM_001198595, intron 2 of 4)	SVA_F|Retroposon|SVA	-12953	NM_172311	286749		NM_172311	ENSG00000068781	STON1-GTF2A1L	ALF|GTF2A1L|GTF2A1LF|SALF	STON1-GTF2A1L readthrough	protein-coding
82794	chr16	21461901	21463180	+	0	NA	intron (NR_027155, intron 13 of 28)	Tigger4b|DNA|TcMar-Tigger	-28085	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
9200	chr1	45615471	45615630	+	0	NA	intron (NM_001195193, intron 9 of 12)	intron (NM_001195193, intron 9 of 12)	8504	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
15068	chr1	148451751	148452550	+	0	NA	intron (NR_027468, intron 1 of 4)	intron (NR_027468, intron 1 of 4)	7770	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
220619	chr8	100929951	100930500	+	0	NA	intron (NM_001135702, intron 2 of 5)	AluSx4|SINE|Alu	20346	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
113813	chr19	10587101	10587300	+	0	NA	exon (NM_005498, exon 1 of 12)	exon (NM_005498, exon 1 of 12)	112	NM_005498	10053		NM_005498	ENSG00000129354	AP1M2	AP1-mu2|HSMU1B|MU-1B|MU1B|mu2	adaptor related protein complex 1 subunit mu 2	protein-coding
184224	chr5	96381601	96381800	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	50459	NM_001177875	5122		NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC1/3|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
153893	chr22	30294951	30295250	+	0	NA	intron (NM_031937, intron 4 of 8)	intron (NM_031937, intron 4 of 8)	-5595	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
4095	chr1	19208071	19208550	+	0	NA	intron (NM_020765, intron 1 of 105)	AluY|SINE|Alu	1956	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
44223	chr11	96339101	96340150	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-1813	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
30062	chr10	73859321	73860280	+	0	NA	intron (NM_172173, intron 3 of 19)	intron (NM_172173, intron 3 of 19)	14755	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
151873	chr22	18726351	18727080	+	0	NA	Intergenic	AluSc|SINE|Alu	-7220	NR_165635	642643		NR_136561	ENSG00000182824	FAM230E	LINC01662	family with sequence similarity 230 member E	ncRNA
190763	chr6	479021	479280	+	0	NA	Intergenic	MIR3|SINE|MIR	87398	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
14456	chr1	144415521	144415900	+	0	NA	Intergenic	CpG	3134	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
126638	chr2	28821171	28821830	+	0	NA	intron (NM_001142634, intron 3 of 6)	intron (NM_001142634, intron 3 of 6)	5503	NM_001008779	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
161686	chr3	43389601	43390480	+	0	NA	intron (NM_001204831, intron 11 of 12)	intron (NM_001204831, intron 11 of 12)	-38078	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
138960	chr2	218263321	218263700	+	0	NA	TTS (NM_001087)	TTS (NM_001087)	2495	NM_170699	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
164006	chr3	53168121	53168580	+	0	NA	promoter-TSS (NM_001354678)	promoter-TSS (NM_001354678)	-353	NM_001354678	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
96263	chr17	39854371	39854530	+	0	NA	intron (NM_183231, intron 1 of 5)	MER20B|DNA|hAT-Charlie	9738	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
15994	chr1	151988851	151990050	+	0	NA	intron (NM_002966, intron 1 of 2)	intron (NM_002966, intron 1 of 2)	4409	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
83955	chr16	29147051	29147150	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	72258	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
159848	chr3	16514771	16515450	+	0	NA	Intergenic	Intergenic	-1411	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
224611	chr9	20423201	20423650	+	0	NA	intron (NM_001286691, intron 4 of 10)	intron (NM_001286691, intron 4 of 10)	-12187	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
97466	chr17	43753521	43753800	+	0	NA	TTS (NM_025237)	TTS (NM_025237)	5131	NM_025237	50964		NM_025237	ENSG00000167941	SOST	CDD|DAND6|SOST1|VBCH	sclerostin	protein-coding
6086	chr1	27239251	27239550	+	0	NA	intron (NM_015023, intron 1 of 15)	AluJb|SINE|Alu	4768	NM_015023	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
160583	chr3	30970271	30970430	+	0	NA	Intergenic	Intergenic	-75689	NM_207359	339896		NM_207359	ENSG00000144644	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase like 1	protein-coding
54624	chr12	92603571	92604230	+	0	NA	Intergenic	Intergenic	-98943	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
69835	chr14	99234111	99234700	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	37792	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
233534	chrX	226201	226880	+	0	NA	Intergenic	CpG	-49816	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228334	chr9	98795971	98797400	+	0	NA	promoter-TSS (NM_173551)	promoter-TSS (NM_173551)	-130	NM_173551	203286		NM_173551	ENSG00000165138	ANKS6	ANKRD14|NPHP16|PKDR1|SAMD6	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding
169299	chr3	158641721	158642650	+	0	NA	Intergenic	Charlie3|DNA|hAT-Charlie	-2342	NR_164499	85476		NM_024996	ENSG00000168827	GFM1	COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1|mtEF-G1	G elongation factor mitochondrial 1	protein-coding
130151	chr2	74958251	74959600	+	0	NA	intron (NM_019896, intron 1 of 3)	CpG	282	NM_019896	56655		NM_019896	ENSG00000115350	POLE4	YHHQ1|p12	DNA polymerase epsilon 4, accessory subunit	protein-coding
168616	chr3	149576121	149576380	+	0	NA	intron (NM_001348362, intron 5 of 9)	intron (NM_001348362, intron 5 of 9)	81775	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
13513	chr1	114751601	114751800	+	0	NA	intron (NM_001242891, intron 1 of 20)	(A)n|Simple_repeat|Simple_repeat	6284	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
68608	chr14	89615501	89615780	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	3525	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
217128	chr8	25319371	25319930	+	0	NA	exon (NM_024940, exon 15 of 52)	exon (NM_024940, exon 15 of 52)	-25752	NR_106936	102465527		NR_106936	ENSG00000274988	MIR6876	hsa-mir-6876	microRNA 6876	ncRNA
206243	chr7	29192271	29192630	+	0	NA	intron (NM_001371255, intron 1 of 18)	intron (NM_001371255, intron 1 of 18)	-2055	NM_001293070	1124		NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
192833	chr6	27133701	27134880	+	0	NA	TTS (NM_021064)	TTS (NM_021064)	1247	NM_021064	8969		NM_021064	ENSG00000196787	H2AC11	H2A.1b|H2A/p|H2AC13|H2AC15|H2AC16|H2AC17|H2AFP|H2AG|HIST1H2AG|pH2A/f	H2A clustered histone 11	protein-coding
55562	chr12	106134121	106134380	+	0	NA	intron (NM_014840, intron 1 of 6)	intron (NM_014840, intron 1 of 6)	5783	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
120066	chr19	42074451	42074550	+	0	NA	intron (NM_001330519, intron 1 of 1)	(AAATA)n|Simple_repeat|Simple_repeat	-1666	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
206327	chr7	30306771	30307350	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-17170	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
136329	chr2	175165671	175166180	+	0	NA	intron (NR_045772, intron 1 of 14)	AluSc8|SINE|Alu	1784	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
228001	chr9	95510521	95513130	+	0	NA	intron (NM_001083603, intron 1 of 23)	intron (NM_001083603, intron 1 of 23)	-2559	NM_000264	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
214914	chr7	151469371	151469530	+	0	NA	intron (NM_005614, intron 7 of 7)	intron (NM_005614, intron 7 of 7)	-28637	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
57354	chr12	121777721	121778300	+	0	NA	3' UTR (NM_019034, exon 5 of 5)	3' UTR (NM_019034, exon 5 of 5)	15678	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
202002	chr6	152569371	152569730	+	0	NA	intron (NM_033071, intron 2 of 145)	intron (NM_033071, intron 2 of 145)	67301	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
218054	chr8	38883571	38883900	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-17611	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
32139	chr10	101272171	101272950	+	0	NA	Intergenic	Intergenic	-9010	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
39	chr1	191451	192350	+	0	NA	Intergenic	Intergenic	-3942	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
38557	chr11	45924301	45925380	+	0	NA	exon (NM_152312, exon 6 of 14)	exon (NM_152312, exon 6 of 14)	2184	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
34962	chr11	492271	492430	+	0	NA	TTS (NM_001329544).2	TTS (NM_001329544).2	14418	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
221210	chr8	120809601	120810600	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	1946	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
102659	chr17	76076691	76077830	+	0	NA	exon (NM_003857, exon 2 of 2)	exon (NM_003857, exon 2 of 2)	-1922	NM_180990	353174		NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding
178386	chr4	146942971	146943330	+	0	NA	intron (NM_001300761, intron 2 of 13)	intron (NM_001300761, intron 2 of 13)	2714	NM_001300761	83894		NM_031956	ENSG00000137473	TTC29	NYD-SP14|SPGF42|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
232657	chr9	136486201	136486500	+	0	NA	TTS (NM_152571)	TTS (NM_152571)	-2591	NM_001276418	9919		NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding
203835	chr7	1430401	1430600	+	0	NA	Intergenic	Intergenic	28970	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
64551	chr14	24606971	24607370	+	0	NA	exon (NM_033423, exon 4 of 5)	exon (NM_033423, exon 4 of 5)	2515	NM_001270781	2999		NM_033423	ENSG00000100450	GZMH	CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2	granzyme H	protein-coding
154144	chr22	31268571	31268930	+	0	NA	intron (NM_005569, intron 11 of 15)	MIRb|SINE|MIR	20366	NM_001031801	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
27462	chr10	32005001	32005550	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	51150	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
118257	chr19	35255121	35255580	+	0	NA	intron (NM_001260490, intron 2 of 6)	intron (NM_001260490, intron 2 of 6)	6348	NM_001385215	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
190664	chr5	181251371	181251830	+	0	NA	intron (NR_109909, intron 2 of 2)	intron (NR_109909, intron 2 of 2)	5059	NR_109909	101928649		NR_109909	ENSG00000233937	CTC-338M12.4	-	uncharacterized LOC101928649	ncRNA
39374	chr11	59755101	59756200	+	0	NA	intron (NM_004177, intron 1 of 10)	CpG	274	NM_001178040	6809		NM_004177	ENSG00000166900	STX3	DIAR12|MVID2|RDMVID|STX3A	syntaxin 3	protein-coding
187627	chr5	142984471	142984830	+	0	NA	intron (NR_146198, intron 11 of 22)	Tigger3b|DNA|TcMar-Tigger	-115740	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
25919	chr10	11318751	11319050	+	0	NA	non-coding (NR_126062, exon 3 of 3)	non-coding (NR_126062, exon 3 of 3)	25774	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
171316	chr3	195975821	195976330	+	0	NA	intron (NR_003264, intron 8 of 16)	L2a|LINE|L2	14204	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
21911	chr1	207827401	207827600	+	0	NA	Intergenic	Tigger16a|DNA|TcMar-Tigger	-4797	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
228280	chr9	98074101	98074800	+	0	NA	intron (NM_018946, intron 2 of 5)	intron (NM_018946, intron 2 of 5)	17718	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
189429	chr5	172862351	172862650	+	0	NA	intron (NM_001031711, intron 1 of 9)	intron (NM_001031711, intron 1 of 9)	28249	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
83437	chr16	27289701	27289900	+	0	NA	intron (NR_037184, intron 4 of 4)	intron (NR_037184, intron 4 of 4)	-21028	NM_145080	197370		NM_145080	ENSG00000169189	NSMCE1	NSE1	NSE1 homolog, SMC5-SMC6 complex component	protein-coding
232907	chr9	136857751	136857850	+	0	NA	intron (NM_206920, intron 19 of 26)	intron (NM_206920, intron 19 of 26)	5454	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
102909	chr17	76562671	76563030	+	0	NA	intron (NR_038108, intron 3 of 3)	intron (NR_038108, intron 3 of 3)	1217	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
157456	chr22	45252751	45253550	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-12256	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
181171	chr5	39060771	39061150	+	0	NA	intron (NM_001285439, intron 2 of 38)	MIRb|SINE|MIR	13439	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
137102	chr2	190961901	190962300	+	0	NA	intron (NM_014905, intron 17 of 17)	Charlie30a|DNA|hAT-Charlie	52071	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
55291	chr12	103434251	103434350	+	0	NA	intron (NR_103526, intron 2 of 10)	MLT1K|LTR|ERVL-MaLR	61668	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
51299	chr12	51247251	51247350	+	0	NA	TTS (NM_001136269)	TTS (NM_001136269)	8474	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
76345	chr15	74432871	74433030	+	0	NA	intron (NM_001146029, intron 1 of 12)	intron (NM_001146029, intron 1 of 12)	754	NM_001146030	8482		NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|PFIC11|SEMAK1|SEMAL	semaphorin 7A (JohnMiltonHagen blood group)	protein-coding
92756	chr17	14926651	14926830	+	0	NA	Intergenic	Intergenic	-88065	NR_135638	101928475		NR_135638	ENSG00000232058	LOC101928475	-	uncharacterized LOC101928475	ncRNA
41908	chr11	67275671	67276370	+	0	NA	intron (NM_001619, intron 1 of 20)	intron (NM_001619, intron 1 of 20)	9547	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
67370	chr14	69755721	69756280	+	0	NA	Intergenic	Intergenic	-11142	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
50077	chr12	44826801	44827000	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	48761	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
229518	chr9	122562201	122562620	+	0	NA	Intergenic	L1PA10|LINE|L1	6067	NM_001004454	138881		NM_001004454	ENSG00000171496	OR1L8	OR9-24	olfactory receptor family 1 subfamily L member 8	protein-coding
95698	chr17	38450871	38451150	+	0	NA	intron (NM_001199417, intron 1 of 23).2	intron (NM_001199417, intron 1 of 23).2	22546	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
61811	chr13	75633351	75633700	+	0	NA	intron (NM_005358, intron 2 of 29)	L1MC5a|LINE|L1	2469	NR_120411	101927155		NR_120410	ENSG00000261105	LMO7-AS1	UCHL3-AS1	LMO7 antisense RNA 1	ncRNA
65819	chr14	54883671	54884230	+	0	NA	intron (NM_001024024, intron 1 of 6)	intron (NM_001024024, intron 1 of 6)	-5757	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
57633	chr12	122509201	122509800	+	0	NA	intron (NR_036434, intron 8 of 10)	intron (NR_036434, intron 8 of 10)	-8568	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
100655	chr17	63701701	63703050	+	0	NA	TTS (NM_153335)	TTS (NM_153335)	2037	NR_046273	729683		NR_046273		LOC729683	-	uncharacterized LOC729683	ncRNA
236344	chrX	70097371	70097630	+	0	NA	Intergenic	Intergenic	35043	NM_207320	139562		NM_207320	ENSG00000189401	OTUD6A	DUBA2|HSHIN6	OTU deubiquitinase 6A	protein-coding
36194	chr11	3408471	3409500	+	0	NA	non-coding (NR_024248, exon 11 of 11)	non-coding (NR_024248, exon 11 of 11)	-17070	NR_044999	10821		NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
137474	chr2	197102251	197102350	+	0	NA	intron (NM_153697, intron 9 of 9)	L1MC4a|LINE|L1	-95691	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
121234	chr19	46643151	46643450	+	0	NA	Intergenic	AluJb|SINE|Alu	-8618	NM_033258	94235		NM_033258	ENSG00000167414	GNG8	HG3E	G protein subunit gamma 8	protein-coding
62386	chr13	99265101	99265300	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-6772	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
174181	chr4	36320501	36320700	+	0	NA	intron (NR_165630, intron 9 of 10)	MamSINE1|SINE|tRNA-RTE	38984	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
212248	chr7	121395071	121397050	+	0	NA	intron (NM_001040020, intron 1 of 9)	L1M4b|LINE|L1	248	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
147758	chr20	62475051	62475350	+	0	NA	exon (NM_080473, exon 2 of 7)	exon (NM_080473, exon 2 of 7)	795	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
203769	chr7	1223671	1224280	+	0	NA	Intergenic	CpG	-8897	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
133767	chr2	127644051	127644750	+	0	NA	intron (NM_001136037, intron 5 of 10)	intron (NM_001136037, intron 5 of 10)	-1464	NM_001161415	2840		NM_005291	ENSG00000144230	GPR17	-	G protein-coupled receptor 17	protein-coding
209674	chr7	80019201	80019400	+	0	NA	Intergenic	Intergenic	-115531	NM_002069	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
110882	chr19	2636471	2637580	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	6310	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
16422	chr1	154547501	154547700	+	0	NA	TTS (NM_017582)	TTS (NM_017582)	-6009	NR_046668	100874097		NR_046668	ENSG00000229780	UBE2Q1-AS1	-	UBE2Q1 antisense RNA 1	ncRNA
61118	chr13	48496301	48497250	+	0	NA	intron (NR_147985, intron 10 of 11)	(GAGGG)n|Simple_repeat|Simple_repeat	36305	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
100905	chr17	64418521	64419230	+	0	NA	Intergenic	Intergenic	-28015	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
89986	chr16	89845251	89846300	+	0	NA	intron (NM_032451, intron 2 of 14)	intron (NM_032451, intron 2 of 14)	17300	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
107862	chr18	54873271	54873430	+	0	NA	intron (NM_004163, intron 1 of 5)	intron (NM_004163, intron 1 of 5)	44873	NM_004163	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
35577	chr11	1692571	1692730	+	0	NA	Intergenic	Intergenic	-4545	NM_001012416	440023		NM_001012416	ENSG00000205864	KRTAP5-6	KRTAP5.6	keratin associated protein 5-6	protein-coding
72377	chr15	31365601	31366780	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	39355	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
131445	chr2	96320021	96320280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5167	NM_001008949	150771		NM_178495	ENSG00000198885	ITPRIPL1	D1B|KIAA1754L	ITPRIP like 1	protein-coding
146148	chr20	48689351	48690400	+	0	NA	intron (NM_020820, intron 9 of 39)	L2|LINE|L2	138124	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138648	chr2	211611071	211611700	+	0	NA	intron (NM_005235, intron 19 of 27)	LTR12F|LTR|ERV1	814975	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
29457	chr10	70476051	70476750	+	0	NA	Intergenic	Intergenic	-2367	NM_014431	27143		NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	phosphatase domain containing paladin 1	protein-coding
2406	chr1	9561251	9562200	+	0	NA	intron (NM_032315, intron 2 of 6)	intron (NM_032315, intron 2 of 6)	22260	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
196976	chr6	53067121	53067580	+	0	NA	intron (NM_033480, intron 1 of 12)	L2c|LINE|L2	1946	NM_033480	26268		NM_012347	ENSG00000112146	FBXO9	FBX9|NY-REN-57|VCIA1|dJ341E18.2	F-box protein 9	protein-coding
24689	chr1	247210201	247211500	+	0	NA	Intergenic	CpG	-8790	NR_037480	100500849		NR_037480	ENSG00000283881	MIR3916	mir-3916	microRNA 3916	ncRNA
44706	chr11	111586201	111586780	+	0	NA	Intergenic	Intergenic	-15959	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
29935	chr10	73373071	73373230	+	0	NA	Intergenic	AluY|SINE|Alu	-14286	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
1374	chr1	2523541	2524750	+	0	NA	intron (NM_018216, intron 1 of 18).2	intron (NM_018216, intron 1 of 18).2	2451	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
54977	chr12	96325051	96325350	+	0	NA	intron (NM_002595, intron 2 of 16)	intron (NM_002595, intron 2 of 16)	69702	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
72668	chr15	38537401	38537630	+	0	NA	intron (NM_001128602, intron 2 of 15)	MSTA|LTR|ERVL-MaLR	27299	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
22752	chr1	224376871	224378180	+	0	NA	non-coding (NR_102347, exon 4 of 4)	non-coding (NR_102347, exon 4 of 4)	20646	NM_014184	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
149655	chr21	33553221	33553900	+	0	NA	non-coding (NR_103797, exon 3 of 13)	non-coding (NR_103797, exon 3 of 13)	2898	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
121380	chr19	46866301	46866830	+	0	NA	intron (NM_004491, intron 1 of 6)	intron (NM_004491, intron 1 of 6)	5568	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
73392	chr15	42581151	42582080	+	0	NA	intron (NM_020759, intron 1 of 32)	CpG	6009	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
4769	chr1	23534451	23534750	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3367	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
201748	chr6	149928421	149928680	+	0	NA	Intergenic	L1PA6|LINE|L1	-5429	NR_130110	353091		NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
114930	chr19	13965471	13965850	+	0	NA	exon (NM_002918, exon 15 of 21)	exon (NM_002918, exon 15 of 21)	-12268	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
149905	chr21	36129601	36130850	+	0	NA	Intergenic	CpG	-3585	NR_040084	100133286		NR_040084	ENSG00000230212	CBR1-AS1	-	CBR1 antisense RNA 1	ncRNA
211357	chr7	104961151	104961450	+	0	NA	Intergenic	Intergenic	29865	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
18449	chr1	161533901	161534100	+	0	NA	Intergenic	Intergenic	9460	NM_002155	3310		NM_002155	ENSG00000173110	HSPA6	HSP70B'	heat shock protein family A (Hsp70) member 6	protein-coding
136023	chr2	172445651	172445950	+	0	NA	intron (NM_001365530, intron 1 of 25)	MLT1J|LTR|ERVL-MaLR	18214	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
116071	chr19	17235201	17236450	+	0	NA	exon (NM_005234, exon 3 of 4)	exon (NM_005234, exon 3 of 4)	9517	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
208856	chr7	73711351	73711850	+	0	NA	TTS (NR_036247)	TTS (NR_036247)	283	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
206570	chr7	35675851	35676500	+	0	NA	intron (NM_022373, intron 2 of 8)	L1MC5a|LINE|L1	18960	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
209773	chr7	87289451	87289550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	55992	NR_015381	11257		NM_007233	ENSG00000182165	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1|TP53LC12	TP53 target 1	ncRNA
221037	chr8	116712151	116712250	+	0	NA	intron (NM_003756, intron 2 of 7)	intron (NM_003756, intron 2 of 7)	43623	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
133510	chr2	120011501	120011930	+	0	NA	Intergenic	L2a|LINE|L2	-1362	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
128310	chr2	54643701	54643900	+	0	NA	intron (NM_178313, intron 18 of 30)	AluSz6|SINE|Alu	-81212	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
120098	chr19	42131821	42132800	+	0	NA	promoter-TSS (NR_038332)	promoter-TSS (NR_038332)	136	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
168134	chr3	138938291	138938880	+	0	NA	intron (NR_121649, intron 2 of 2)	CpG	5435	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
2096	chr1	7974201	7974600	+	0	NA	intron (NM_007262, intron 5 of 6)	AluY|SINE|Alu	12689	NM_007262	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
14305	chr1	143804771	143804930	+	0	NA	Intergenic	Intergenic	11250	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
127884	chr2	46066771	46066930	+	0	NA	intron (NM_005400, intron 10 of 14)	intron (NM_005400, intron 10 of 14)	-230557	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
184462	chr5	100667271	100667830	+	0	NA	Intergenic	Intergenic	132176	NM_198507	345757		NM_198507	ENSG00000174132	FAM174A	HGS_RE408|NS5ATP6|TMEM157|UNQ1912	family with sequence similarity 174 member A	protein-coding
173851	chr4	22389321	22389580	+	0	NA	intron (NM_145290, intron 17 of 18)	intron (NM_145290, intron 17 of 18)	-49784	NR_037877	100505912		NR_037877		LOC100505912	-	uncharacterized LOC100505912	ncRNA
188994	chr5	167858821	167859080	+	0	NA	intron (NM_001080428, intron 1 of 24)	SVA_F|Retroposon|SVA	104021	NM_001080428	57451		NM_001080428	ENSG00000145934	TENM2	ODZ2|TEN-M2|TEN2|TNM2|ten-2	teneurin transmembrane protein 2	protein-coding
53348	chr12	64642921	64643500	+	0	NA	intron (NR_040718, intron 1 of 3)	MIR|SINE|MIR	-20605	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
99121	chr17	49221251	49222030	+	0	NA	intron (NM_001135186, intron 6 of 7)	MIRb|SINE|MIR	9126	NM_001143804	162466		NM_178500	ENSG00000173868	PHOSPHO1	-	phosphoethanolamine/phosphocholine phosphatase 1	protein-coding
74987	chr15	63900151	63900450	+	0	NA	Intergenic	Intergenic	-27974	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
127005	chr2	36834921	36835380	+	0	NA	Intergenic	L1MEj|LINE|L1	131386	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
119679	chr19	40899971	40900430	+	0	NA	non-coding (NR_040249, exon 5 of 5)	non-coding (NR_040249, exon 5 of 5)	9374	NR_040249	22952		NR_040249	ENSG00000290611	CYP2G1P	CYP2G1|CYP2G2P|CYP2GP1	cytochrome P450 family 2 subfamily G member 1, pseudogene	pseudo
113764	chr19	10513951	10514750	+	0	NA	exon (NM_001166215, exon 2 of 2)	exon (NM_001166215, exon 2 of 2)	3097	NM_030760	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
158276	chr22	50341751	50344100	+	0	NA	promoter-TSS (NM_001365836)	promoter-TSS (NM_001365836)	-402	NM_001351647	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
31064	chr10	88994071	88994530	+	0	NA	intron (NR_135314, intron 1 of 8)	intron (NR_135314, intron 1 of 8)	-1325	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
143414	chr20	29497001	29497680	+	0	NA	promoter-TSS (NR_146067)	promoter-TSS (NR_146067)	-6	NR_146067	102723390		NR_146067		FRG1EP	-	FSHD region gene 1 family member E, pseudogene	pseudo
99828	chr17	55093451	55093900	+	0	NA	intron (NM_178509, intron 16 of 17)	intron (NM_178509, intron 16 of 17)	-124890	NM_001162862	1353		NM_004375	ENSG00000166260	COX11	COX11P|MC4DN23	cytochrome c oxidase copper chaperone COX11	protein-coding
189355	chr5	172287251	172287430	+	0	NA	intron (NR_130933, intron 1 of 1)	intron (NR_130933, intron 1 of 1)	1743	NR_130933	100288254		NM_001007542		LOC100288254	-	uncharacterized LOC100288254	ncRNA
142123	chr20	2690321	2691380	+	0	NA	Intergenic	Intergenic	-1930	NR_138537	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
103211	chr17	77479401	77480150	+	0	NA	intron (NM_001113495, intron 1 of 9)	intron (NM_001113495, intron 1 of 9)	4140	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
206758	chr7	36691771	36691930	+	0	NA	intron (NM_001177506, intron 1 of 21)	MLT1H|LTR|ERVL-MaLR	32644	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
117477	chr19	19771821	19772080	+	0	NA	intron (NR_026956, intron 1 of 2)	AluYm1|SINE|Alu	4463	NR_026956	284440		NM_182576		LINC00663	-	long intergenic non-protein coding RNA 663	ncRNA
216347	chr8	16944101	16944300	+	0	NA	Intergenic	L1PA2|LINE|L1	58145	NM_019851	26281		NM_019851	ENSG00000078579	FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
236271	chrX	66018171	66018530	+	0	NA	promoter-TSS (NR_029637)	promoter-TSS (NR_029637)	-520	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
16525	chr1	154939751	154939850	+	0	NA	intron (NM_001323012, intron 1 of 4)	AluJr|SINE|Alu	2858	NM_001323012	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
207148	chr7	43516851	43517230	+	0	NA	intron (NR_038276, intron 1 of 2)	Tigger3c|DNA|TcMar-Tigger	5502	NR_038276	100506895		NR_038276	ENSG00000231638	LUARIS	SCAT6|lncRNA32	lncRNA upregulator of antiviral response interferon signaling	ncRNA
216223	chr8	12014451	12015650	+	0	NA	Intergenic	CpG	-14298	NM_001302695	613211		NM_001033019	ENSG00000205882	DEFB134	-	defensin beta 134	protein-coding
65949	chr14	55664971	55665330	+	0	NA	intron (NM_001079522, intron 33 of 42)	intron (NM_001079522, intron 33 of 42)	84943	NM_004986	3895		NM_004986	ENSG00000126777	KTN1	CG1|KNT|MU-RMS-40.19	kinectin 1	protein-coding
177333	chr4	109813771	109813930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1660	NM_032993	54433		NM_018983	ENSG00000109534	GAR1	NOLA1	GAR1 ribonucleoprotein	protein-coding
225796	chr9	37509721	37509980	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	23902	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
61941	chr13	78609321	78610280	+	0	NA	intron (NR_047001, intron 5 of 5)	intron (NR_047001, intron 5 of 5)	-6248	NM_006237	5457		NM_006237	ENSG00000152192	POU4F1	ATITHS|BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
42996	chr11	73966701	73967180	+	0	NA	intron (NM_153614, intron 5 of 7)	AluSx|SINE|Alu	15903	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
64976	chr14	37594351	37594450	+	0	NA	intron (NM_004496, intron 1 of 1)	intron (NM_004496, intron 1 of 1)	849	NM_004496	3169		NM_004496	ENSG00000129514	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding
160231	chr3	23954821	23955080	+	0	NA	intron (NR_110524, intron 2 of 8)	intron (NR_110524, intron 2 of 8)	-8388	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
169434	chr3	161406521	161406980	+	0	NA	Intergenic	Intergenic	-19677	NR_102265	101243545		NR_102265	ENSG00000240567	LINC02067	-	long intergenic non-protein coding RNA 2067	ncRNA
107998	chr18	58687101	58688730	+	0	NA	intron (NM_173844, intron 2 of 15)	intron (NM_173844, intron 2 of 15)	-16042	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
220869	chr8	103413151	103413600	+	0	NA	intron (NM_030780, intron 1 of 6)	MIR|SINE|MIR	1732	NM_030780	81034		NM_030780	ENSG00000164933	SLC25A32	GLYB|MFT|MFTC|RREI	solute carrier family 25 member 32	protein-coding
113663	chr19	10384601	10385130	+	0	NA	Intergenic	Intergenic	-4293	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
10789	chr1	77654901	77655100	+	0	NA	intron (NR_164775, intron 1 of 14)	MSTC|LTR|ERVL-MaLR	27658	NM_001376155	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
157571	chr22	45972151	45972450	+	0	NA	intron (NM_058238, intron 1 of 3)	CpG	4862	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
70087	chr14	100166801	100167800	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7655	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
60283	chr13	40624121	40624950	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	42106	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
184575	chr5	102834501	102835080	+	0	NA	intron (NM_001364582, intron 1 of 24)	L2a|LINE|L2	26592	NM_001364582	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
2803	chr1	10941551	10942280	+	0	NA	Intergenic	Intergenic	24772	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
173965	chr4	26034971	26035150	+	0	NA	Intergenic	LTR88a|LTR|Gypsy?	120868	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
36695	chr11	8698071	8698380	+	0	NA	intron (NR_164820, intron 16 of 20)	intron (NR_164820, intron 16 of 20)	12786	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
231354	chr9	130445601	130445800	+	0	NA	intron (NM_054012, intron 1 of 14)	intron (NM_054012, intron 1 of 14)	739	NM_054012	445		NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
9688	chr1	52970251	52970350	+	0	NA	intron (NM_001193599, intron 5 of 14)	FAM|SINE|Alu	43024	NM_001193617	6342		NM_002979	ENSG00000116171	SCP2	NLTP|NSL-TP|SCOX|SCP-2|SCP-CHI|SCP-X|SCPX	sterol carrier protein 2	protein-coding
108353	chr18	67451101	67451500	+	0	NA	Intergenic	L1P2|LINE|L1	-65246	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
53702	chr12	68540971	68541400	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-69714	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
52387	chr12	55724021	55725480	+	0	NA	TTS (NR_037658)	TTS (NR_037658)	3038	NM_001257401	967		NM_001780	ENSG00000135404	CD63	AD1|HOP-26|ME491|MLA1|OMA81H|Pltgp40|TSPAN30	CD63 molecule	protein-coding
182820	chr5	69165621	69166030	+	0	NA	Intergenic	Intergenic	-1185	NM_001354844	891		NM_031966	ENSG00000134057	CCNB1	CCNB	cyclin B1	protein-coding
222739	chr8	141401551	141401650	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	9579	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
95404	chr17	36011301	36011500	+	0	NA	Intergenic	HUERS-P2-int|LTR|ERV1	6572	NM_005064	6368		NM_005064	ENSG00000274736	CCL23	CK-BETA-8|CKb8|Ckb-8|Ckb-8-1|MIP-3|MIP3|MPIF-1|SCYA23|hmrp-2a	C-C motif chemokine ligand 23	protein-coding
19877	chr1	183590171	183590930	+	0	NA	promoter-TSS (NM_001190794)	promoter-TSS (NM_001190794)	54	NM_001190794	4688		NM_000433	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
36660	chr11	8031721	8032180	+	0	NA	Intergenic	Intergenic	-6683	NM_003320	7275		NM_003320	ENSG00000166402	TUB	RDOB|rd5	TUB bipartite transcription factor	protein-coding
141158	chr2	239257521	239257880	+	0	NA	intron (NM_006037, intron 2 of 26)	L1MEg|LINE|L1	-47762	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
136455	chr2	176931701	176933100	+	0	NA	Intergenic	Intergenic	280011	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
147570	chr20	60446521	60446830	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	26301	NR_109903	101928048		NR_109903		LOC101928048	-	uncharacterized LOC101928048	ncRNA
87611	chr16	74365701	74366400	+	0	NA	intron (NR_026950, intron 1 of 14)	AluSx|SINE|Alu	2205	NR_026950	283922		NR_026950	ENSG00000290890	PDPR2P	-	pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene	pseudo
224367	chr9	7783501	7784000	+	0	NA	Intergenic	MADE1|DNA|TcMar-Mariner	16028	NM_033428	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
60076	chr13	33776451	33776750	+	0	NA	Intergenic	Intergenic	-41469	NM_181558	5983		NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
123446	chr19	54134671	54134830	+	0	NA	Intergenic	Intergenic	-3012	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
132048	chr2	101012201	101013030	+	0	NA	intron (NM_001330348, intron 17 of 19)	L1MB8|LINE|L1	10326	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
237850	chrX	130111871	130112530	+	0	NA	Intergenic	Intergenic	-1309	NM_001127197	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
61778	chr13	75173701	75173900	+	0	NA	Intergenic	Intergenic	66581	NR_027466	647288		NR_027466	ENSG00000214249	CTAGE11P	-	CTAGE family member 11, pseudogene	pseudo
222865	chr8	142731721	142732350	+	0	NA	intron (NR_156431, intron 2 of 2)	HERVIP10FH-int|LTR|ERV1	4812	NR_156431	51337		NM_016647	ENSG00000130193	THEM6	C8orf55|DSCD75	thioesterase superfamily member 6	protein-coding
238057	chrX	135529871	135530350	+	0	NA	intron (NM_001351601, intron 2 of 17)	intron (NM_001351601, intron 2 of 17)	-9436	NR_046740	100874118		NR_046740	ENSG00000225235	INTS6L-AS1	DDX26B-AS1	INTS6L antisense RNA 1	ncRNA
104919	chr17	81912821	81913230	+	0	NA	intron (NM_016538, intron 9 of 9)	intron (NM_016538, intron 9 of 9)	-1626	NM_001256435	5833		NM_002861	ENSG00000185813	PCYT2	ET|SPG82	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
171585	chr3	197025051	197025600	+	0	NA	intron (NM_033316, intron 3 of 6)	intron (NM_033316, intron 3 of 6)	4492	NM_033316	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
234917	chrX	37571351	37571680	+	0	NA	promoter-TSS (NM_001170331)	promoter-TSS (NM_001170331)	-146	NM_001170331	347404		NM_198511	ENSG00000147036	LANCL3	-	LanC like family member 3	protein-coding
108059	chr18	59801801	59802250	+	0	NA	Intergenic	Intergenic	-97971	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
107966	chr18	58501071	58501380	+	0	NA	intron (NM_052947, intron 11 of 12)	intron (NM_052947, intron 11 of 12)	-50073	NR_039899	100616357		NR_039899	ENSG00000207778	MIR3591	-	microRNA 3591	ncRNA
110986	chr19	3027071	3027230	+	0	NA	intron (NM_003260, intron 4 of 19)	intron (NM_003260, intron 4 of 19)	2130	NM_001300846	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
48641	chr12	10399151	10399600	+	0	NA	TTS (NR_120430)	TTS (NR_120430)	-9334	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
55490	chr12	104737501	104737950	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	146092	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
94872	chr17	31522971	31523130	+	0	NA	intron (NM_001346748, intron 5 of 12)	intron (NM_001346748, intron 5 of 12)	-11833	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
120107	chr19	42174471	42174630	+	0	NA	Intergenic	Intergenic	-41037	NR_036208	100422980		NR_036208	ENSG00000266226	MIR4323	-	microRNA 4323	ncRNA
196872	chr6	49646351	49646450	+	0	NA	Intergenic	Intergenic	-9561	NM_000324	6005		NM_000324	ENSG00000112077	RHAG	CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1	Rh associated glycoprotein	protein-coding
213537	chr7	139089801	139090230	+	0	NA	intron (NM_020119, intron 1 of 12)	AluSq2|SINE|Alu	19705	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
190200	chr5	178214871	178215030	+	0	NA	intron (NR_103509, intron 7 of 9)	intron (NR_103509, intron 7 of 9)	10417	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
164167	chr3	56783501	56784880	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-8473	NM_001377413	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
187771	chr5	145936501	145936930	+	0	NA	intron (NM_152550, intron 1 of 9)	CpG	137	NM_152550	153769		NM_152550	ENSG00000156463	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
131702	chr2	97743551	97743650	+	0	NA	Intergenic	AluSq2|SINE|Alu	10300	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
178515	chr4	150885251	150886130	+	0	NA	intron (NM_001367550, intron 17 of 56)	L1M4a1|LINE|L1	129577	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
212753	chr7	129924571	129924930	+	0	NA	intron (NM_001202498, intron 1 of 6)	MIR3|SINE|MIR	28210	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
38932	chr11	47469571	47469730	+	0	NA	3' UTR (NM_001376435, exon 14 of 14)	3' UTR (NM_001376435, exon 14 of 14)	-20514	NM_032645	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
147243	chr20	57415921	57417680	+	0	NA	Intergenic	MIRb|SINE|MIR	-23744	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
220735	chr8	102112371	102113150	+	0	NA	intron (NM_001040625, intron 1 of 6)	MSTB1|LTR|ERVL-MaLR	11574	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
172137	chr4	1193221	1193680	+	0	NA	intron (NM_001199021, intron 1 of 7)	intron (NM_001199021, intron 1 of 7)	15512	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
147327	chr20	58014421	58014930	+	0	NA	Intergenic	Intergenic	10771	NR_147083	105376992		NR_147083	ENSG00000275852	LINC01742	-	long intergenic non-protein coding RNA 1742	ncRNA
85025	chr16	31702071	31702380	+	0	NA	intron (NR_024034, intron 2 of 8)	AluSx|SINE|Alu	1612	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
75617	chr15	67131471	67131930	+	0	NA	intron (NM_001145102, intron 1 of 8)	MIRb|SINE|MIR	5984	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
92548	chr17	8953121	8953580	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	12357	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
55465	chr12	104681071	104681430	+	0	NA	intron (NM_018413, intron 2 of 2)	L1MB8|LINE|L1	89617	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
3924	chr1	17432401	17432900	+	0	NA	intron (NM_018715, intron 2 of 12).2	intron (NM_018715, intron 2 of 12).2	5886	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
202228	chr6	156816601	156816880	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-37009	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
232582	chr9	136395201	136395600	+	0	NA	exon (NM_003086, exon 4 of 23)	exon (NM_003086, exon 4 of 23)	3037	NM_003086	6621		NM_003086	ENSG00000165684	SNAPC4	NEDRSO|PTFalpha|SNAP190	small nuclear RNA activating complex polypeptide 4	protein-coding
203381	chr6	170516951	170517280	+	0	NA	Intergenic	L1PA15-16|LINE|L1	36192	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
154775	chr22	36526851	36527380	+	0	NA	intron (NR_156418, intron 1 of 14)	intron (NR_156418, intron 1 of 14)	2051	NM_003753	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
43931	chr11	93137051	93137150	+	0	NA	Intergenic	L1HS|LINE|L1	60326	NM_001286139	120103		NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
68494	chr14	88038471	88039030	+	0	NA	intron (NR_046094, intron 2 of 3)	MLT1J1-int|LTR|ERVL-MaLR	-12438	NR_110121	101928791		NR_110121		LINC01147	-	long intergenic non-protein coding RNA 1147	ncRNA
190081	chr5	177780921	177781180	+	0	NA	intron (NR_146226, intron 1 of 28)	intron (NR_146226, intron 1 of 28)	1870	NR_146227	285596		NM_173663	ENSG00000170074	FAM153A	NY-REN-7	family with sequence similarity 153 member A	protein-coding
27565	chr10	32354821	32355480	+	0	NA	intron (NR_104163, intron 1 of 1)	MER1A|DNA|hAT-Charlie	7786	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
6020	chr1	27099071	27100280	+	0	NA	non-coding (NR_046474, exon 11 of 11)	non-coding (NR_046474, exon 11 of 11)	55450	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
222951	chr8	143158771	143159230	+	0	NA	intron (NM_002347, intron 2 of 3).2	intron (NM_002347, intron 2 of 3).2	1004	NM_002347	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
208952	chr7	74180601	74181130	+	0	NA	intron (NM_022170, intron 1 of 6)	intron (NM_022170, intron 1 of 6)	6509	NM_022170	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
212904	chr7	130893421	130894380	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-16361	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
204012	chr7	1889421	1890080	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	-45497	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
166925	chr3	125055401	125056390	+	0	NA	5' UTR (NM_020733, exon 1 of 17)	5' UTR (NM_020733, exon 1 of 17)	102	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
21841	chr1	207355251	207355550	+	0	NA	intron (NM_001300904, intron 10 of 10)	intron (NM_001300904, intron 10 of 10)	33722	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
93587	chr17	19121851	19122550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5389	NM_001353418	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
25849	chr10	11232121	11232830	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	67445	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
188129	chr5	150393921	150394530	+	0	NA	intron (NM_001371623, intron 23 of 26)	intron (NM_001371623, intron 23 of 26)	18531	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
54125	chr12	76508521	76508980	+	0	NA	intron (NM_001003712, intron 1 of 22)	MER41B|LTR|ERV1	51021	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
24876	chr10	928401	928900	+	0	NA	intron (NM_001351277, intron 1 of 17)	AluJb|SINE|Alu	3055	NM_001351277	23185		NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	La ribonucleoprotein 4B	protein-coding
96803	chr17	41900751	41900850	+	0	NA	intron (NM_001096, intron 11 of 28)	L2a|LINE|L2	18151	NM_001096	47		NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
177039	chr4	107719421	107720900	+	0	NA	promoter-TSS (NM_005443)	promoter-TSS (NM_005443)	74	NM_005443	9061		NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
138254	chr2	203242701	203243080	+	0	NA	intron (NM_001371705, intron 1 of 9)	L2|LINE|L2	3549	NM_001371698	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
162016	chr3	46489751	46489850	+	0	NA	Intergenic	Intergenic	-4566	NM_001321122	4057		NM_002343	ENSG00000012223	LTF	GIG12|HEL110|HLF2|LF	lactotransferrin	protein-coding
144592	chr20	35796421	35797480	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	24935	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
201253	chr6	144094751	144096350	+	0	NA	promoter-TSS (NM_031287)	promoter-TSS (NM_031287)	23	NM_031287	83443		NM_031287	ENSG00000169976	SF3B5	SF3b10|Ysf3	splicing factor 3b subunit 5	protein-coding
27590	chr10	32382551	32382850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3931	NR_168506	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
225768	chr9	37407451	37408000	+	0	NA	Intergenic	Intergenic	-14971	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
121499	chr19	47157871	47158500	+	0	NA	intron (NR_027280, intron 5 of 8)	intron (NR_027280, intron 5 of 8)	27350	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
21148	chr1	203681521	203681780	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	-47931	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
212654	chr7	129524301	129524800	+	0	NA	Intergenic	L1MC4|LINE|L1	22019	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
208602	chr7	72950171	72950330	+	0	NA	3' UTR (NM_001257190, exon 16 of 16)	3' UTR (NM_001257190, exon 16 of 16)	4513	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
222601	chr8	141023451	141023750	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-21521	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
33642	chr10	119681921	119682430	+	0	NA	Intergenic	Intergenic	30795	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
211728	chr7	107043151	107043450	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1405	NM_002736	5577		NM_002736	ENSG00000005249	PRKAR2B	PRKAR2|RII-BETA	protein kinase cAMP-dependent type II regulatory subunit beta	protein-coding
191959	chr6	16140121	16140450	+	0	NA	intron (NM_013262, intron 2 of 6)	intron (NM_013262, intron 2 of 6)	-1271	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
48010	chr12	6930201	6930400	+	0	NA	intron (NM_001940, intron 1 of 9)	intron (NM_001940, intron 1 of 9)	2341	NM_001940	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
123479	chr19	54172771	54173380	+	0	NA	promoter-TSS (NM_001145303).6	promoter-TSS (NM_001145303).6	85	NM_001145303	147798		NM_144686	ENSG00000167608	TMC4	-	transmembrane channel like 4	protein-coding
5774	chr1	26503801	26504200	+	0	NA	Intergenic	AluSg|SINE|Alu	-25761	NM_002953	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
91524	chr17	4972871	4973230	+	0	NA	intron (NM_001171166, intron 13 of 20)	intron (NM_001171166, intron 13 of 20)	-2900	NR_106925	102465522		NR_106925	ENSG00000278517	MIR6865	hsa-mir-6865	microRNA 6865	ncRNA
126417	chr2	27714101	27714730	+	0	NA	intron (NR_135200, intron 1 of 1)	MIRb|SINE|MIR	1317	NR_135200	100129995		NR_135200	ENSG00000205334	LINC01460	-	long intergenic non-protein coding RNA 1460	ncRNA
84904	chr16	31211251	31213180	+	0	NA	Intergenic	L2a|LINE|L2	-1904	NM_001008274	493829		NM_001008274	ENSG00000177238	TRIM72	MG53	tripartite motif containing 72	protein-coding
119990	chr19	41914901	41915490	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	13254	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
159910	chr3	16927551	16928250	+	0	NA	intron (NM_001144382, intron 1 of 5)	MER103C|DNA|hAT-Charlie	-5190	NM_015184	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
170265	chr3	184263801	184264000	+	0	NA	intron (NM_014693, intron 2 of 18)	AluSx3|SINE|Alu	-2347	NM_033259	94032		NM_033259	ENSG00000163888	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin dependent protein kinase II inhibitor 2	protein-coding
89961	chr16	89785401	89786280	+	0	NA	intron (NM_001286167, intron 14 of 42)	intron (NM_001286167, intron 14 of 42)	30807	NM_001286167	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
18943	chr1	168518121	168518800	+	0	NA	Intergenic	Intergenic	-22816	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
161700	chr3	43505371	43505530	+	0	NA	intron (NM_001346467, intron 12 of 13)	intron (NM_001346467, intron 12 of 13)	116476	NM_001346467	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
107612	chr18	48926121	48926380	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	16557	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
26814	chr10	23525551	23525650	+	0	NA	Intergenic	Intergenic	86525	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
191609	chr6	12112921	12113480	+	0	NA	intron (NM_002114, intron 3 of 8)	L2b|LINE|L2	100888	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
239412	chrY	26407721	26407800	+	0	NA	Intergenic	AluYe5|SINE|Alu	679270	NR_002176	474148		NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis expressed transcript, Y-linked 3B	ncRNA
37683	chr11	27504901	27505300	+	0	NA	intron (NM_018362, intron 1 of 4)	AluSx|SINE|Alu	1669	NM_018362	55327		NM_018362	ENSG00000148943	LIN7C	LIN-7-C|LIN-7C|MALS-3|MALS3|VELI3	lin-7 homolog C, crumbs cell polarity complex component	protein-coding
62361	chr13	99215401	99216300	+	0	NA	intron (NR_026644, intron 1 of 8)	intron (NR_026644, intron 1 of 8)	14996	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
149911	chr21	36144051	36144550	+	0	NA	intron (NR_038894, intron 2 of 2)	AluSz|SINE|Alu	9221	NM_001236	874		NM_001236	ENSG00000159231	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
194089	chr6	31896571	31898100	+	0	NA	promoter-TSS (NM_001289413).2	promoter-TSS (NM_001289413).2	-129	NM_001289413	10919		NM_006709	ENSG00000204371	EHMT2	BAT8|C6orf30|G9A|GAT8|KMT1C|NG36	euchromatic histone lysine methyltransferase 2	protein-coding
11740	chr1	91950251	91950350	+	0	NA	5' UTR (NM_001242810, exon 2 of 19)	5' UTR (NM_001242810, exon 2 of 19)	929	NM_001242805	676		NM_001726	ENSG00000137948	BRDT	BRD6|CT9|SPGF21	bromodomain testis associated	protein-coding
460	chr1	1140351	1140680	+	0	NA	intron (NR_038869, intron 1 of 2)	intron (NR_038869, intron 1 of 2)	3498	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
75952	chr15	70451501	70451700	+	0	NA	Intergenic	Intergenic	54328	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
175238	chr4	56980701	56981050	+	0	NA	intron (NM_001303268, intron 1 of 23)	AluSx|SINE|Alu	1979	NM_000938	5431		NM_000938	ENSG00000047315	POLR2B	POL2RB|RPB2|hRPB140	RNA polymerase II subunit B	protein-coding
9079	chr1	44842621	44843830	+	0	NA	promoter-TSS (NM_003738)	promoter-TSS (NM_003738)	28	NM_003738	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
22124	chr1	211783921	211784180	+	0	NA	intron (NM_001375842, intron 4 of 7)	L2a|LINE|L2	-45587	NR_135818	102723727		NR_135818	ENSG00000229258	LPGAT1-AS1	-	LPGAT1 antisense RNA 1	ncRNA
13633	chr1	116434721	116435280	+	0	NA	intron (NR_125972, intron 2 of 3)	L1MD1|LINE|L1	-16378	NR_027646	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
98887	chr17	48573371	48573750	+	0	NA	intron (NM_001384750, intron 1 of 3)	intron (NM_001384750, intron 1 of 3)	888	NM_002146	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
205127	chr7	7042351	7042730	+	0	NA	Intergenic	L1P3|LINE|L1	24505	NR_037454	100500886		NR_037454	ENSG00000266287	MIR3683	-	microRNA 3683	ncRNA
135129	chr2	157429851	157430780	+	0	NA	intron (NM_004288, intron 5 of 7)	intron (NM_004288, intron 5 of 7)	13774	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
168898	chr3	152322601	152323050	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	18165	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
80004	chr16	1914151	1914250	+	0	NA	intron (NM_001009606, intron 1 of 1)	intron (NM_001009606, intron 1 of 1)	4215	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
129463	chr2	69572051	69572430	+	0	NA	intron (NM_001371577, intron 2 of 14)	MER96B|DNA|hAT-Tip100	-52069	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
99730	chr17	50914851	50915400	+	0	NA	Intergenic	Intergenic	-47147	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
16899	chr1	155867371	155868500	+	0	NA	intron (NM_152280, intron 1 of 3)	intron (NM_152280, intron 1 of 3)	8368	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
144747	chr20	36597001	36597530	+	0	NA	intron (NM_001199535, intron 2 of 4)	intron (NM_001199535, intron 2 of 4)	-8514	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
26037	chr10	12356801	12357700	+	0	NA	intron (NM_153498, intron 1 of 10)	AluSx|SINE|Alu	7703	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
213316	chr7	135167351	135167650	+	0	NA	intron (NM_001305629, intron 2 of 2)	intron (NM_001305629, intron 2 of 2)	1974	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
157820	chr22	47176221	47176830	+	0	NA	TTS (NM_001284303)	TTS (NM_001284303)	-169046	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
158249	chr22	50304771	50305330	+	0	NA	intron (NM_001376879, intron 1 of 38)	intron (NM_001376879, intron 1 of 38)	-1229	NM_001376873	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
147821	chr20	62715371	62715630	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	6664	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
237782	chrX	129781101	129782400	+	0	NA	intron (NM_018990, intron 1 of 7)	intron (NM_018990, intron 1 of 7)	1801	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
110578	chr19	2154401	2154800	+	0	NA	Intergenic	MER21A|LTR|ERVL	-3034	NM_001261826	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
219140	chr8	66119871	66120030	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-7179	NM_184086	84675		NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
133889	chr2	130151151	130151500	+	0	NA	TTS (NM_017751)	TTS (NM_017751)	-6213	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
126591	chr2	28768971	28769130	+	0	NA	intron (NM_206876, intron 2 of 8)	L1ME3|LINE|L1	17220	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
100911	chr17	64459571	64459730	+	0	NA	intron (NM_001085423, intron 4 of 9)	MIRb|SINE|MIR	10535	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
115432	chr19	15312251	15313180	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluSx|SINE|Alu	19824	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
203887	chr7	1482521	1483050	+	0	NA	intron (NM_001080453, intron 26 of 47)	intron (NM_001080453, intron 26 of 47)	21604	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
119646	chr19	40813221	40813630	+	0	NA	Intergenic	Intergenic	-2325	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
185254	chr5	123515751	123516390	+	0	NA	intron (NM_001364146, intron 1 of 10)	intron (NM_001364146, intron 1 of 10)	3893	NM_001270574	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
198707	chr6	108157251	108157650	+	0	NA	non-coding (NR_145458, exon 2 of 2)	non-coding (NR_145458, exon 2 of 2)	-8572	NM_003269	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
217553	chr8	29345871	29346250	+	0	NA	5' UTR (NM_057158, exon 2 of 5)	5' UTR (NM_057158, exon 2 of 5)	2745	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
163931	chr3	52695151	52695450	+	0	NA	TTS (NM_206825)	TTS (NM_206825)	2564	NR_003057	692109		NR_003057	ENSG00000212452	SNORD69	HBII-210	small nucleolar RNA, C/D box 69	snoRNA
151324	chr21	45589751	45591240	+	0	NA	Intergenic	CpG	-3159	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
49784	chr12	31894671	31895030	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-7647	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
182571	chr5	65955471	65955730	+	0	NA	intron (NM_001253697, intron 1 of 25)	AluSx1|SINE|Alu	-10027	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
135994	chr2	172253201	172253700	+	0	NA	Intergenic	Intergenic	150444	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
12017	chr1	96720021	96720280	+	0	NA	Intergenic	AluSp|SINE|Alu	-1455	NM_001300988	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
801	chr1	1549271	1549730	+	0	NA	intron (NM_014188, intron 2 of 4)	AluY|SINE|Alu	-8876	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
77528	chr15	84717771	84717930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1390	NM_001271920	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
90425	chr17	1348771	1349300	+	0	NA	intron (NR_024058, intron 6 of 6)	AluY|SINE|Alu	51187	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
96071	chr17	39598851	39599630	+	0	NA	Intergenic	Intergenic	8680	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
152771	chr22	21780351	21780850	+	0	NA	intron (NM_138957, intron 6 of 7)	L1ME4b|LINE|L1	-44806	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
25413	chr10	6558171	6559530	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	21426	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
72719	chr15	38671651	38673550	+	0	NA	Intergenic	Intergenic	-23998	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
52189	chr12	54336351	54336700	+	0	NA	promoter-TSS (NR_029894)	promoter-TSS (NR_029894)	-691	NR_029894	442892		NR_029894	ENSG00000199122	MIR148B	MIRN148B|mir-148b	microRNA 148b	ncRNA
90373	chr17	1258271	1260400	+	0	NA	Intergenic	Intergenic	-11109	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
168866	chr3	152290101	152290980	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-8474	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
203506	chr7	617301	619280	+	0	NA	intron (NM_001164759, intron 4 of 10)	Penelope1_Vert|LINE|Penelope	14892	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
3760	chr1	16670221	16671100	+	0	NA	Intergenic	PRIMA41-int|LTR|ERV1	-3712	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
189967	chr5	177438471	177439130	+	0	NA	non-coding (NR_038915, exon 4 of 4)	non-coding (NR_038915, exon 4 of 4)	-7195	NM_001375593	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
61258	chr13	50068351	50068650	+	0	NA	intron (NR_152568, intron 1 of 3)	intron (NR_152568, intron 1 of 3)	13541	NR_152568	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
158027	chr22	49920871	49921300	+	0	NA	intron (NM_001135101, intron 4 of 10)	Tigger3a|DNA|TcMar-Tigger	2451	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
224861	chr9	31119851	31120250	+	0	NA	Intergenic	Intergenic	261440	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
559	chr1	1250571	1251750	+	0	NA	Intergenic	Intergenic	-4438	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
97481	chr17	43781401	43781600	+	0	NA	intron (NM_001353400, intron 2 of 4)	AluSc8|SINE|Alu	1065	NM_001136483	284067		NM_001136483	ENSG00000231256	CFAP97D1	C17orf105	CFAP97 domain containing 1	protein-coding
142770	chr20	10673371	10673550	+	0	NA	exon (NM_000214, exon 1 of 26)	exon (NM_000214, exon 1 of 26)	539	NM_000214	182		NM_000214	ENSG00000101384	JAG1	AGS|AGS1|AHD|AWS|CD339|CMT2HH|DCHE|HJ1|JAGL1	jagged canonical Notch ligand 1	protein-coding
227539	chr9	91734251	91734700	+	0	NA	intron (NM_001318204, intron 5 of 7)	intron (NM_001318204, intron 5 of 7)	-98130	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
205292	chr7	10939621	10941300	+	0	NA	promoter-TSS (NM_002489)	promoter-TSS (NM_002489)	-307	NM_002489	4697		NM_002489	ENSG00000189043	NDUFA4	CI-9k|CI-MLRQ|COXFA4|MC4DN21|MISTR1|MLRQ|MRCAF1	NDUFA4 mitochondrial complex associated	protein-coding
34796	chr11	240401	240600	+	0	NA	intron (NM_002817, intron 2 of 12)	CR1_Mam|LINE|CR1	3524	NM_002817	5719		NM_002817	ENSG00000185627	PSMD13	HSPC027|Rpn9|S11|p40.5	proteasome 26S subunit, non-ATPase 13	protein-coding
191731	chr6	13706851	13707430	+	0	NA	intron (NM_005493, intron 1 of 13)	AluJo|SINE|Alu	4695	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
113286	chr19	8541871	8542030	+	0	NA	exon (NM_001348355, exon 15 of 28)	exon (NM_001348355, exon 15 of 28)	-27783	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
208420	chr7	66752601	66753150	+	0	NA	intron (NM_001367749, intron 1 of 4)	intron (NM_001367749, intron 1 of 4)	-3007	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
66914	chr14	65305251	65305550	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	29783	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
345	chr1	1004101	1004480	+	0	NA	Intergenic	Intergenic	-4193	NM_001142467	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
47555	chr12	4291851	4292150	+	0	NA	intron (NM_001759, intron 4 of 4)	L1MB4|LINE|L1	-15816	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
78301	chr15	90907001	90907400	+	0	NA	intron (NR_135503, intron 7 of 22)	intron (NR_135503, intron 7 of 22)	3010	NR_135504	4122		NM_006122	ENSG00000196547	MAN2A2	MANA2X|alpha-MIIx	mannosidase alpha class 2A member 2	protein-coding
163759	chr3	52365301	52365900	+	0	NA	intron (NM_015512, intron 34 of 77)	intron (NM_015512, intron 34 of 77)	44408	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
173357	chr4	7845571	7845930	+	0	NA	intron (NM_001371091, intron 5 of 17)	intron (NM_001371091, intron 5 of 17)	26558	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
193900	chr6	31619671	31622130	+	0	NA	intron (NM_080686, intron 1 of 30).2	CpG	185	NM_080686	7916		NM_004638	ENSG00000204469	PRRC2A	BAT2|D6S51|D6S51E|G2	proline rich coiled-coil 2A	protein-coding
221085	chr8	117386371	117386730	+	0	NA	Intergenic	Intergenic	-134163	NM_001282986	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
164239	chr3	57068571	57068800	+	0	NA	intron (NM_181727, intron 1 of 1)	intron (NM_181727, intron 1 of 1)	8021	NM_181727	353324		NM_181727	ENSG00000186451	SPATA12	SRG5	spermatogenesis associated 12	protein-coding
78972	chr15	101542751	101542900	+	0	NA	Intergenic	Intergenic	-52841	NM_138324	5046		NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
145348	chr20	41142901	41143650	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-5275	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
82243	chr16	15054951	15056850	+	0	NA	exon (NM_173474, exon 1 of 10).2	exon (NM_173474, exon 1 of 10).2	174	NM_173474	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
224605	chr9	20395721	20395980	+	0	NA	intron (NM_001286691, intron 5 of 10)	intron (NM_001286691, intron 5 of 10)	15388	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
180326	chr5	6446921	6447580	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1609	NM_001145161	134111		NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 QL1	protein-coding
172269	chr4	1415071	1415230	+	0	NA	Intergenic	CpG	-8708	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
85360	chr16	50263071	50263500	+	0	NA	Intergenic	Intergenic	-3266	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
87040	chr16	68283071	68283230	+	0	NA	intron (NM_001076785, intron 4 of 11)	intron (NM_001076785, intron 4 of 11)	18624	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
186282	chr5	134547971	134548330	+	0	NA	intron (NM_001289985, intron 3 of 11)	intron (NM_001289985, intron 3 of 11)	22042	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
46104	chr11	122874321	122874700	+	0	NA	Intergenic	AluSc|SINE|Alu	-8018	NM_199124	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
57513	chr12	122116751	122117050	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	38144	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
190814	chr6	1393701	1394300	+	0	NA	intron (NM_001452, intron 1 of 1)	intron (NM_001452, intron 1 of 1)	-3589	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
194383	chr6	32988771	32989030	+	0	NA	Intergenic	AluSx1|SINE|Alu	15816	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
193650	chr6	30878671	30878830	+	0	NA	Intergenic	L2b|LINE|L2	-3863	NM_001297652	780		NM_001954	ENSG00000204580	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
235144	chrX	41097751	41098380	+	0	NA	intron (NM_001039590, intron 1 of 44)	L1ME3|LINE|L1	12620	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
12834	chr1	110050451	110050950	+	0	NA	intron (NR_073071, intron 19 of 21)	intron (NR_073071, intron 19 of 21)	16076	NM_033088	85369		NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
13354	chr1	113860921	113861550	+	0	NA	intron (NM_012411, intron 1 of 18)	AluSx3|SINE|Alu	4600	NR_037864	100287722		NR_037864	ENSG00000226167	AP4B1-AS1	-	AP4B1 antisense RNA 1	ncRNA
186913	chr5	139590051	139590350	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	28861	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
31998	chr10	100968901	100969770	+	0	NA	Intergenic	Intergenic	-3194	NM_001203244	57715		NM_017893	ENSG00000095539	SEMA4G	-	semaphorin 4G	protein-coding
216841	chr8	22596301	22596500	+	0	NA	3' UTR (NM_176871, exon 10 of 10)	3' UTR (NM_176871, exon 10 of 10)	-3199	NM_001013842	541565		NM_173686	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
228015	chr9	95734771	95734930	+	0	NA	Intergenic	Intergenic	-140841	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
85395	chr16	50300401	50300630	+	0	NA	intron (NM_001114, intron 8 of 25)	intron (NM_001114, intron 8 of 25)	7899	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
224955	chr9	33046521	33046880	+	0	NA	3' UTR (NM_018225, exon 12 of 12)	3' UTR (NM_018225, exon 12 of 12)	21427	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
131381	chr2	96250971	96251330	+	0	NA	3' UTR (NM_001193304, exon 4 of 4)	3' UTR (NM_001193304, exon 4 of 4)	14847	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
71119	chr14	104931001	104932000	+	0	NA	intron (NM_001308174, intron 7 of 10)	intron (NM_001308174, intron 7 of 10)	6621	NM_001308174	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
75111	chr15	64500601	64501350	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	40397	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
55781	chr12	108618051	108619080	+	0	NA	Intergenic	Intergenic	13516	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
51789	chr12	53367271	53368000	+	0	NA	Intergenic	AluSp|SINE|Alu	-12541	NM_001251825	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
169844	chr3	177184651	177185580	+	0	NA	intron (NM_001374329, intron 1 of 15)	L1ME4b|LINE|L1	11363	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
198882	chr6	109458671	109459450	+	0	NA	intron (NM_001286613, intron 1 of 24)	L2b|LINE|L2	-3073	NM_001159291	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
32882	chr10	110148071	110148630	+	0	NA	intron (NR_164121, intron 2 of 2)	MLT1F1|LTR|ERVL-MaLR	3630	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
27079	chr10	27242801	27243780	+	0	NA	Intergenic	Intergenic	-1179	NM_001352580	91452		NM_145698	ENSG00000107897	ACBD5	RDLKD	acyl-CoA binding domain containing 5	protein-coding
225747	chr9	37082051	37082600	+	0	NA	intron (NR_036592, intron 1 of 1)	MIR3|SINE|MIR	2429	NR_036592	100506710		NR_036592	ENSG00000281649	EBLN3P	EBLN3	endogenous Bornavirus like nucleoprotein 3, pseudogene	pseudo
134634	chr2	144426221	144426480	+	0	NA	intron (NM_014795, intron 3 of 9)	intron (NM_014795, intron 3 of 9)	-93264	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
213425	chr7	138024171	138024330	+	0	NA	Intergenic	Intergenic	-22164	NM_001253775	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
60244	chr13	40575101	40575300	+	0	NA	intron (NM_002015, intron 1 of 2)	AluJo|SINE|Alu	91441	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
237807	chrX	129935021	129935350	+	0	NA	Intergenic	Intergenic	29021	NM_006649	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
6208	chr1	27472501	27472900	+	0	NA	intron (NM_006990, intron 1 of 8)	AluJr|SINE|Alu	17467	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
107809	chr18	51194401	51194880	+	0	NA	intron (NM_016626, intron 1 of 1)	intron (NM_016626, intron 1 of 1)	3041	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
88418	chr16	84702001	84702200	+	0	NA	intron (NM_005153, intron 1 of 13)	AluSx1|SINE|Alu	2100	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
216396	chr8	17934271	17934650	+	0	NA	intron (NR_148032, intron 2 of 38)	AluSx1|SINE|Alu	11472	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
205038	chr7	6532501	6532700	+	0	NA	intron (NM_001145118, intron 2 of 21)	intron (NM_001145118, intron 2 of 21)	18836	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
203702	chr7	1041021	1041400	+	0	NA	intron (NM_032350, intron 2 of 4)	CpG	-3336	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
91216	chr17	3924051	3924450	+	0	NA	3' UTR (NM_005173, exon 21 of 21)	3' UTR (NM_005173, exon 21 of 21)	-7785	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
48147	chr12	7920601	7920800	+	0	NA	3' UTR (NM_006931, exon 10 of 10)	3' UTR (NM_006931, exon 10 of 10)	15487	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
34592	chr10	133256851	133256950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9015	NR_108079	101927671		NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
211539	chr7	105390171	105390330	+	0	NA	promoter-TSS (NM_001350740)	promoter-TSS (NM_001350740)	-860	NM_001350740	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
69011	chr14	91502751	91502850	+	0	NA	intron (NR_158976, intron 2 of 16)	intron (NR_158976, intron 2 of 16)	7510	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
191812	chr6	14634101	14634680	+	0	NA	Intergenic	Intergenic	-348936	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
26489	chr10	17742671	17743180	+	0	NA	Intergenic	AluSz|SINE|Alu	-9276	NM_001098844	653567		NM_001013629	ENSG00000148483	TMEM236	FAM23A|FAM23B|bA162I21.2|bA16O1.2	transmembrane protein 236	protein-coding
138311	chr2	203742851	203743350	+	0	NA	Intergenic	AluY|SINE|Alu	36461	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123511	chr19	54214751	54215300	+	0	NA	Intergenic	Intergenic	7982	NR_135494	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
75818	chr15	69396851	69397150	+	0	NA	TTS (NR_132970)	TTS (NR_132970)	-17349	NR_160295	9493		NM_004856	ENSG00000137807	KIF23	CDA3|CDAIII|CDAN3|CDAN3A|CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
24366	chr1	241532201	241532400	+	0	NA	promoter-TSS (NM_003679)	promoter-TSS (NM_003679)	-78	NM_003679	8564		NM_003679	ENSG00000117009	KMO	dJ317G22.1	kynurenine 3-monooxygenase	protein-coding
123836	chr19	55226771	55227880	+	0	NA	exon (NM_001372013, exon 2 of 2)	exon (NM_001372013, exon 2 of 2)	1438	NM_001372013	255043		NM_173804	ENSG00000180089	TMEM86B	-	transmembrane protein 86B	protein-coding
193365	chr6	30325021	30326300	+	0	NA	promoter-TSS (NM_021253).2	promoter-TSS (NM_021253).2	474	NR_052012	414778		NR_052012	ENSG00000270604	HCG17	HCG18|LINC00046|NCRNA00046	HLA complex group 17	ncRNA
217085	chr8	23761321	23762130	+	0	NA	Intergenic	Intergenic	-54969	NM_001136271	137814		NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
55823	chr12	108854301	108854700	+	0	NA	intron (NM_001161330, intron 1 of 13)	intron (NM_001161330, intron 1 of 13)	3083	NM_018984	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
14622	chr1	145451721	145453130	+	0	NA	Intergenic	Intergenic	-46647	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
200065	chr6	130034071	130034830	+	0	NA	intron (NM_001007102, intron 2 of 21)	Tigger12A|DNA|TcMar-Tigger	14806	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
123497	chr19	54202401	54202950	+	0	NA	intron (NM_001321706, intron 3 of 3).8	intron (NM_001321706, intron 3 of 3).8	1817	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
55992	chr12	110289651	110290280	+	0	NA	intron (NM_170665, intron 3 of 19)	intron (NM_170665, intron 3 of 19)	8718	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
40164	chr11	62884171	62885230	+	0	NA	intron (NM_001012662, intron 8 of 11)	intron (NM_001012662, intron 8 of 11)	3001	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
134733	chr2	144583351	144583800	+	0	NA	Intergenic	Intergenic	-59131	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
58806	chr12	132793021	132793550	+	0	NA	intron (NM_005895, intron 11 of 23)	CpG	-31453	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
133253	chr2	113324651	113325450	+	0	NA	Intergenic	CpG	-46129	NM_003466	7849		NM_003466	ENSG00000125618	PAX8	PAX-8	paired box 8	protein-coding
83550	chr16	28070501	28071130	+	0	NA	Intergenic	Intergenic	-7101	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
197933	chr6	89817671	89817830	+	0	NA	intron (NM_014611, intron 1 of 101)	intron (NM_014611, intron 1 of 101)	2044	NM_014611	23195		NM_014611	ENSG00000112159	MDN1	Rea1	midasin AAA ATPase 1	protein-coding
21212	chr1	204084521	204085080	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	11685	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
182419	chr5	61394451	61394560	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	62247	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
30479	chr10	79244871	79245830	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-102119	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
202363	chr6	157762751	157763050	+	0	NA	Intergenic	MER34B|LTR|ERV1	-60346	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
164148	chr3	56761851	56762330	+	0	NA	intron (NM_001289698, intron 3 of 10)	MER20|DNA|hAT-Charlie	13627	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
17352	chr1	156495851	156496830	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	4435	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
80192	chr16	2138151	2138650	+	0	NA	Intergenic	AluSc|SINE|Alu	-2271	NR_037467	100500916		NR_037467	ENSG00000264397	MIR3180-5	mir-3180-5	microRNA 3180-5	ncRNA
99974	chr17	57597201	57598550	+	0	NA	intron (NM_170721, intron 7 of 9)	intron (NM_170721, intron 7 of 9)	10537	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
54236	chr12	81758651	81759500	+	0	NA	promoter-TSS (NM_001220473)	promoter-TSS (NM_001220473)	275	NM_003625	8499		NM_003625	ENSG00000139220	PPFIA2	-	PTPRF interacting protein alpha 2	protein-coding
62669	chr13	102598421	102598680	+	0	NA	intron (NR_160411, intron 1 of 28)	intron (NR_160411, intron 1 of 28)	1564	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
185817	chr5	132446971	132447750	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	36431	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
15564	chr1	150555171	150555330	+	0	NA	intron (NM_001288608, intron 8 of 19)	AluSg|SINE|Alu	3321	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
34261	chr10	131842421	131842680	+	0	NA	Intergenic	Intergenic	-52351	NR_038365	399827		NM_001001677	ENSG00000189275	LINC01164	-	long intergenic non-protein coding RNA 1164	ncRNA
43045	chr11	74130551	74130650	+	0	NA	intron (NM_015531, intron 7 of 30)	L1MB3|LINE|L1	40402	NM_015531	26005		NM_015531	ENSG00000168014	C2CD3	OFD14	C2 domain containing 3 centriole elongation regulator	protein-coding
38430	chr11	45105271	45106230	+	0	NA	intron (NM_001359633, intron 2 of 7)	intron (NM_001359633, intron 2 of 7)	11591	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
39204	chr11	57511551	57512550	+	0	NA	intron (NM_003627, intron 2 of 14)	L1MB8|LINE|L1	2859	NM_001198810	8501		NM_003627	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	solute carrier family 43 member 1	protein-coding
68267	chr14	77039901	77041280	+	0	NA	promoter-TSS (NR_110554)	promoter-TSS (NR_110554)	-459	NR_110554	283575		NR_110554	ENSG00000246548	LINC02288	-	long intergenic non-protein coding RNA 2288	ncRNA
94362	chr17	28912351	28913050	+	0	NA	exon (NM_001290131, exon 9 of 11)	exon (NM_001290131, exon 9 of 11)	-9621	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
78063	chr15	90141201	90141600	+	0	NA	Intergenic	LTR56|LTR|ERV1	-38932	NM_002168	3418		NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDH-2|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2	protein-coding
202069	chr6	154234701	154235100	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	95181	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
78609	chr15	93420251	93420350	+	0	NA	Intergenic	5S|rRNA|rRNA	214234	NM_001365393								
132067	chr2	101264571	101265130	+	0	NA	exon (NM_017546, exon 4 of 7)	exon (NM_017546, exon 4 of 7)	8199	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
122984	chr19	50803771	50805950	+	0	NA	promoter-TSS (NM_001290155)	promoter-TSS (NM_001290155)	-7	NM_001290155	84798		NM_032712	ENSG00000293495	C19orf48P	C19orf48|CA916798	multidrug resistance-related protein	pseudo
156286	chr22	40463201	40464630	+	0	NA	promoter-TSS (NM_001282660)	promoter-TSS (NM_001282660)	-475	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
128855	chr2	63865751	63866480	+	0	NA	intron (NM_001377528, intron 4 of 10)	Tigger13a|DNA|TcMar-Tigger	24219	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
29530	chr10	70879701	70880370	+	0	NA	3' UTR (NM_003901, exon 15 of 15)	3' UTR (NM_003901, exon 15 of 15)	7846	NM_001289797	5092		NM_000281	ENSG00000166228	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase 1	protein-coding
224348	chr9	6885051	6885350	+	0	NA	intron (NR_148677, intron 6 of 21)	L1ME1|LINE|L1	127227	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
19367	chr1	173870221	173871430	+	0	NA	exon (NM_001122770, exon 3 of 5)	exon (NM_001122770, exon 3 of 5)	-1943	NR_152521	60674		NR_002578	ENSG00000234741	GAS5	NCRNA00030|SNHG2	growth arrest specific 5	ncRNA
141483	chr2	241089251	241089750	+	0	NA	intron (NR_138466, intron 6 of 6)	intron (NR_138466, intron 6 of 6)	12787	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
145605	chr20	44618301	44619400	+	0	NA	TTS (NM_000022)	TTS (NM_000022)	32849	NM_000022	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
61035	chr13	48214571	48215130	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-18356	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
180415	chr5	10369951	10370250	+	0	NA	intron (NM_001270661, intron 1 of 22)	AluJo|SINE|Alu	16405	NM_001270661	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
62003	chr13	80979021	80979280	+	0	NA	Intergenic	Intergenic	-39241	NR_125770	103724386		NR_125770		LINC00377	TCONS_00021861	long intergenic non-protein coding RNA 377	ncRNA
72207	chr15	30171971	30172430	+	0	NA	Intergenic	Intergenic	-23836	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
2059	chr1	7914151	7914450	+	0	NA	Intergenic	Intergenic	26539	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
81660	chr16	10981771	10982330	+	0	NA	intron (NM_001243403, intron 8 of 20)	L1ME4b|LINE|L1	37486	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
231211	chr9	129950871	129951730	+	0	NA	intron (NM_001363755, intron 6 of 15)	AluJr|SINE|Alu	81695	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
12140	chr1	100079001	100079200	+	0	NA	intron (NM_033055, intron 10 of 11)	intron (NM_033055, intron 10 of 11)	41005	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
112681	chr19	7036671	7037430	+	0	NA	TTS (NM_001164419)	TTS (NM_001164419)	3123	NM_001164419	653656		NM_001164419	ENSG00000205718	MBD3L4	-	methyl-CpG binding domain protein 3 like 4	protein-coding
67200	chr14	68923071	68923430	+	0	NA	intron (NM_001130004, intron 2 of 21)	L2c|LINE|L2	56052	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
148413	chr20	63948181	63948900	+	0	NA	intron (NR_148442, intron 1 of 15)	intron (NR_148442, intron 1 of 15)	2647	NM_001193379	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
9544	chr1	51515401	51516150	+	0	NA	intron (NM_001981, intron 1 of 24)	MIRb|SINE|MIR	3491	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
145955	chr20	46132551	46132960	+	0	NA	Intergenic	Intergenic	14441	NR_126502	958		NM_001250	ENSG00000101017	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule	protein-coding
118763	chr19	38377601	38377830	+	0	NA	intron (NM_002812, intron 3 of 6)	AluSq2|SINE|Alu	3144	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
238281	chrX	149473501	149474480	+	0	NA	Intergenic	Intergenic	31316	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
104780	chr17	81716671	81716830	+	0	NA	intron (NM_012140, intron 5 of 10)	intron (NM_012140, intron 5 of 10)	4466	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
150322	chr21	42027751	42027930	+	0	NA	Intergenic	Intergenic	5571	NR_027273	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
222528	chr8	140574421	140575780	+	0	NA	intron (NM_012154, intron 2 of 18)	intron (NM_012154, intron 2 of 18)	60533	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
199075	chr6	111654951	111655250	+	0	NA	Intergenic	L2c|LINE|L2	-48826	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
81695	chr16	11232571	11234630	+	0	NA	Intergenic	Intergenic	22582	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
167012	chr3	126083571	126084780	+	0	NA	promoter-TSS (NM_001008485)	promoter-TSS (NM_001008485)	-51	NM_017836	54946		NM_017836	ENSG00000114544	SLC41A3	SLC41A1-L2	solute carrier family 41 member 3	protein-coding
180688	chr5	21483771	21484330	+	0	NA	intron (NR_027026, intron 3 of 4)	intron (NR_027026, intron 3 of 4)	24570	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
183993	chr5	90439751	90440430	+	0	NA	Intergenic	AluYc|SINE|Alu	30090	NR_105024	731157		NR_105024	ENSG00000255647	LOC731157	-	uncharacterized LOC731157	ncRNA
99627	chr17	50565671	50566730	+	0	NA	intron (NM_198376, intron 1 of 34)	intron (NM_198376, intron 1 of 34)	-4092	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
134116	chr2	134123751	134124300	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-3100	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
155860	chr22	39471551	39472230	+	0	NA	intron (NM_002409, intron 1 of 1)	intron (NM_002409, intron 1 of 1)	4932	NR_126469	104502417		NR_126469	ENSG00000227188	MGAT3-AS1	TapSAKI	MGAT3 antisense RNA 1	ncRNA
87117	chr16	68752401	68753850	+	0	NA	intron (NM_004360, intron 2 of 15)	AluSz6|SINE|Alu	15833	NM_001317185	999		NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
137169	chr2	191113801	191115000	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	36594	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
175149	chr4	55538551	55538850	+	0	NA	intron (NM_004898, intron 1 of 22)	L1MEg|LINE|L1	7232	NM_001267843	9575		NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
207167	chr7	43599601	43600330	+	0	NA	intron (NM_004760, intron 2 of 6)	Ricksha_c|DNA|MULE-MuDR	16857	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
234610	chrX	19807171	19807730	+	0	NA	intron (NM_001353892, intron 2 of 17)	L2a|LINE|L2	-7677	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
210187	chr7	98869071	98869230	+	0	NA	intron (NM_001134450, intron 1 of 7)	intron (NM_001134450, intron 1 of 7)	864	NM_152913	222865		NM_152913	ENSG00000166448	TMEM130	-	transmembrane protein 130	protein-coding
205974	chr7	26170771	26170930	+	0	NA	intron (NM_004289, intron 1 of 3)	AluJo|SINE|Alu	18652	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
102962	chr17	76707651	76708050	+	0	NA	intron (NM_001008528, intron 1 of 3)	intron (NM_001008528, intron 1 of 3)	1747	NR_130926	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
216368	chr8	17676121	17676380	+	0	NA	intron (NM_001363062, intron 6 of 13)	intron (NM_001363062, intron 6 of 13)	251	NM_001330470	57509		NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1	microtubule associated scaffold protein 1	protein-coding
128961	chr2	64640251	64640750	+	0	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	13413	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
46092	chr11	122847221	122848200	+	0	NA	intron (NM_019604, intron 1 of 9)	L3|LINE|CR1	9210	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
21724	chr1	206782351	206782980	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-10171	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
14275	chr1	143506751	143507600	+	0	NA	Intergenic	L1MC4|LINE|L1	-82491	NR_027356	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
220906	chr8	106661121	106661380	+	0	NA	intron (NM_181354, intron 1 of 13)	intron (NM_181354, intron 1 of 13)	3442	NM_181354	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
232264	chr9	134414271	134414630	+	0	NA	intron (NM_001291921, intron 3 of 8)	MIR|SINE|MIR	7890	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
221553	chr8	124972221	124972480	+	0	NA	promoter-TSS (NM_152412)	promoter-TSS (NM_152412)	-945	NM_152412	137209		NM_152412	ENSG00000180938	ZNF572	-	zinc finger protein 572	protein-coding
237586	chrX	123804801	123805030	+	0	NA	Intergenic	AluSx|SINE|Alu	-54793	NR_165803	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
146006	chr20	46552821	46553370	+	0	NA	Intergenic	Intergenic	-2441	NM_080721	128506		NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
16656	chr1	155170651	155171150	+	0	NA	intron (NM_173852, intron 3 of 4)	AluJo|SINE|Alu	2404	NM_173852	200185		NM_173852	ENSG00000163463	KRTCAP2	KCP2	keratinocyte associated protein 2	protein-coding
103354	chr17	78108271	78109380	+	0	NA	TTS (NM_001374593)	TTS (NM_001374593)	19930	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
238000	chrX	134796701	134797950	+	0	NA	promoter-TSS (NM_001331094)	promoter-TSS (NM_001331094)	-93	NM_001166600	159090		NM_145284	ENSG00000156504	PABIR2	FAM122B|SPACIA2	PABIR family member 2	protein-coding
175092	chr4	54109501	54109900	+	0	NA	Intergenic	CpG	9537	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
158138	chr22	50177951	50178800	+	0	NA	non-coding (NR_027691, exon 3 of 5)	non-coding (NR_027691, exon 3 of 5)	-7538	NR_135275	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
19678	chr1	180955651	180956150	+	0	NA	Intergenic	Intergenic	-1013	NR_145481	103344928		NR_145481	ENSG00000232586	KIAA1614-AS1	-	KIAA1614 antisense RNA 1	ncRNA
120150	chr19	42228671	42228830	+	0	NA	TTS (NM_001314033)	TTS (NM_001314033)	8438	NM_001314033	116115		NM_133444	ENSG00000167625	ZNF526	DENNED	zinc finger protein 526	protein-coding
47448	chr12	3744221	3745150	+	0	NA	intron (NM_032680, intron 1 of 10)	intron (NM_032680, intron 1 of 10)	8424	NM_032680	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
56424	chr12	113333121	113333630	+	0	NA	intron (NM_024959, intron 1 of 15)	intron (NM_024959, intron 1 of 15)	1734	NM_001330466	80024		NM_024959	ENSG00000089060	SLC8B1	NCKX6|NCLX|SLC24A6	solute carrier family 8 member B1	protein-coding
118664	chr19	37468851	37470350	+	0	NA	promoter-TSS (NM_001321991)	promoter-TSS (NM_001321991)	29	NM_001321991	148268		NM_144694	ENSG00000171827	ZNF570	-	zinc finger protein 570	protein-coding
86064	chr16	57592591	57593950	+	0	NA	Intergenic	Intergenic	-26468	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
190257	chr5	178895771	178896330	+	0	NA	intron (NM_030613, intron 1 of 4)	CpG	137	NM_030613	80108		NM_030613	ENSG00000198939	ZFP2	ZNF751|zfp-2	ZFP2 zinc finger protein	protein-coding
220656	chr8	101125151	101125940	+	0	NA	Intergenic	Intergenic	44694	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
145861	chr20	45911771	45912600	+	0	NA	promoter-TSS (NM_006227)	promoter-TSS (NM_006227)	-30	NM_006227	5360		NM_006227	ENSG00000100979	PLTP	BPIFE|HDLCQ9	phospholipid transfer protein	protein-coding
135272	chr2	159776901	159777130	+	0	NA	intron (NM_014880, intron 5 of 5)	AluJb|SINE|Alu	21193	NM_014880	9936		NM_014880	ENSG00000241399	CD302	BIMLEC|CLEC13A|DCL-1|DCL1	CD302 molecule	protein-coding
196428	chr6	43451051	43451350	+	0	NA	TTS (NM_001198934)	TTS (NM_001198934)	4348	NM_023932	65989		NM_023932	ENSG00000171462	DLK2	DLK-2|EGFL9	delta like non-canonical Notch ligand 2	protein-coding
156663	chr22	41644601	41644800	+	0	NA	intron (NM_001288976, intron 6 of 12)	AluSx|SINE|Alu	23405	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
229625	chr9	124018271	124018430	+	0	NA	intron (NM_004789, intron 3 of 4)	CpG	6582	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
14755	chr1	146012271	146012430	+	0	NA	Intergenic	AluSc|SINE|Alu	9385	NM_213652	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
186105	chr5	134126951	134127800	+	0	NA	intron (NM_001366502, intron 1 of 7)	intron (NM_001366502, intron 1 of 7)	3757	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
137010	chr2	190652871	190653030	+	0	NA	intron (NM_005966, intron 2 of 9)	MER30|DNA|hAT-Charlie	3867	NM_001321312	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
168909	chr3	152334021	152334300	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	6830	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
23787	chr1	233613951	233614650	+	0	NA	exon (NM_002245, exon 1 of 3)	exon (NM_002245, exon 1 of 3)	194	NM_002245	3775		NM_002245	ENSG00000135750	KCNK1	DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1	potassium two pore domain channel subfamily K member 1	protein-coding
237978	chrX	134186421	134187080	+	0	NA	Intergenic	Intergenic	-16472	NR_029523	406899		NR_029523	ENSG00000284157	MIR106A	MIRN106A|mir-106|mir-106a	microRNA 106a	ncRNA
78470	chr15	92892851	92893300	+	0	NA	intron (NR_037600, intron 4 of 4)	AluSx|SINE|Alu	-7249	NM_001271	1106		NM_001271	ENSG00000173575	CHD2	DEE94|EEOC	chromodomain helicase DNA binding protein 2	protein-coding
105926	chr18	3481801	3482030	+	0	NA	Intergenic	MER39|LTR|ERV1	15665	NR_110429	100505592		NR_110428	ENSG00000266835	GAPLINC	LINC01540	gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA	ncRNA
86998	chr16	68235641	68236600	+	0	NA	promoter-TSS (NM_024939)	promoter-TSS (NM_024939)	7	NM_001365264	80004		NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
47626	chr12	6145371	6145730	+	0	NA	Intergenic	AluY|SINE|Alu	-20880	NM_000552	7450		NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
198750	chr6	108569071	108569230	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	8233	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
97765	chr17	44497501	44497700	+	0	NA	intron (NM_001304940, intron 1 of 9)	intron (NM_001304940, intron 1 of 9)	5806	NM_001002909	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
130953	chr2	87516021	87516280	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	46200	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
70439	chr14	102045471	102045630	+	0	NA	intron (NM_001376, intron 72 of 77)	AluSx1|SINE|Alu	41494	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
22971	chr1	226072001	226072400	+	0	NA	TTS (NM_002107)	TTS (NM_002107)	9473	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
168659	chr3	150421951	150422330	+	0	NA	intron (NM_001303264, intron 1 of 2)	intron (NM_001303264, intron 1 of 2)	13842	NR_130136	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
131506	chr2	96543871	96544630	+	0	NA	intron (NM_001319092, intron 1 of 6)	Tigger1|DNA|TcMar-Tigger	6371	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
159789	chr3	16321071	16321600	+	0	NA	intron (NM_015150, intron 9 of 9)	intron (NM_015150, intron 9 of 9)	56123	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
4614	chr1	22098771	22099500	+	0	NA	3' UTR (NM_001039802, exon 7 of 7)	3' UTR (NM_001039802, exon 7 of 7)	43962	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
145367	chr20	41159571	41159730	+	0	NA	exon (NM_002660, exon 2 of 32)	exon (NM_002660, exon 2 of 32)	-9373	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
115842	chr19	16521551	16521650	+	0	NA	TTS (NM_032207)	TTS (NM_032207)	20837	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
87319	chr16	70249801	70250000	+	0	NA	3' UTR (NM_058219, exon 1 of 1)	3' UTR (NM_058219, exon 1 of 1)	2040	NM_058219	118460		NM_058219	ENSG00000223496	EXOSC6	EAP4|MTR3|Mtr3p|hMtr3p|p11	exosome component 6	protein-coding
58281	chr12	130087351	130087450	+	0	NA	Intergenic	Intergenic	16065	NR_146538	105370078		NR_146538		LINC02419	-	long intergenic non-protein coding RNA 2419	ncRNA
85870	chr16	57040371	57040530	+	0	NA	intron (NR_169516, intron 16 of 47)	intron (NR_169516, intron 16 of 47)	50893	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
22302	chr1	213017171	213017600	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	-1510	NR_125333	90806		NM_144567	ENSG00000174606	ANGEL2	Ccr4d|KIAA0759L	angel homolog 2	protein-coding
49743	chr12	31727101	31727300	+	0	NA	intron (NM_001278412, intron 1 of 8)	intron (NM_001278412, intron 1 of 8)	1821	NM_001113402	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
232786	chr9	136696101	136696400	+	0	NA	Intergenic	CpG	-8793	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
130603	chr2	85888401	85889900	+	0	NA	promoter-TSS (NM_001354227)	promoter-TSS (NM_001354227)	-116	NM_001363847	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
44356	chr11	102449671	102449830	+	0	NA	intron (NM_052932, intron 1 of 4)	intron (NM_052932, intron 1 of 4)	3015	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
97790	chr17	44758651	44759850	+	0	NA	exon (NM_002390, exon 1 of 27)	exon (NM_002390, exon 1 of 27)	262	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
20154	chr1	192604701	192605300	+	0	NA	Intergenic	Intergenic	29227	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
102616	chr17	75974871	75975550	+	0	NA	intron (NM_007292, intron 2 of 13)	AluSz6|SINE|Alu	3956	NM_004035	51		NM_004035	ENSG00000161533	ACOX1	ACOX|AOX|MITCH|PALMCOX|SCOX	acyl-CoA oxidase 1	protein-coding
165270	chr3	75437051	75437430	+	0	NA	intron (NR_151705, intron 1 of 2)	intron (NR_151705, intron 1 of 2)	1932	NR_151707	107986100		NR_151705	ENSG00000272690	LINC02018	-	long intergenic non-protein coding RNA 2018	ncRNA
181973	chr5	55146301	55146830	+	0	NA	intron (NM_152623, intron 3 of 11)	intron (NM_152623, intron 3 of 11)	-13606	NR_131338	493869		NM_001008397	ENSG00000164294	GPX8	EPLA847|GPx-8|GSHPx-8|UNQ847	glutathione peroxidase 8 (putative)	protein-coding
202110	chr6	154753951	154754400	+	0	NA	intron (NM_001286189, intron 3 of 21)	intron (NM_001286189, intron 3 of 21)	20759	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
65767	chr14	54420571	54420730	+	0	NA	TTS (NM_005192)	TTS (NM_005192)	20724	NM_005776	10175		NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family member 1	protein-coding
119697	chr19	41119471	41119630	+	0	NA	intron (NR_135528, intron 3 of 9)	intron (NR_135528, intron 3 of 9)	5118	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
146494	chr20	49885801	49886200	+	0	NA	intron (NR_048540, intron 10 of 11)	MER5A|DNA|hAT-Charlie	22141	NR_162136	113219455		NR_162136		MIR12122	-	microRNA 12122	ncRNA
159617	chr3	15267701	15268500	+	0	NA	intron (NM_004844, intron 4 of 8)	intron (NM_004844, intron 4 of 8)	13916	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
18984	chr1	169138971	169139130	+	0	NA	intron (NR_104229, intron 12 of 12)	intron (NR_104229, intron 12 of 12)	32360	NM_001677	481		NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
189948	chr5	177404301	177405230	+	0	NA	intron (NM_000505, intron 7 of 13)	intron (NM_000505, intron 7 of 13)	-4104	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
156764	chr22	41847321	41847580	+	0	NA	intron (NR_103834, intron 1 of 21)	intron (NR_103834, intron 1 of 21)	-12785	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
157419	chr22	45129751	45130750	+	0	NA	Intergenic	Intergenic	22334	NR_038957	100506714		NR_038956	ENSG00000226328	NUP50-DT	NUP50-AS1	NUP50 divergent transcript	ncRNA
130704	chr2	86625351	86625680	+	0	NA	intron (NM_001198954, intron 2 of 7)	intron (NM_001198954, intron 2 of 7)	-1638	NM_001198951	7844		NM_005667	ENSG00000239305	RNF103	HKF-1|KF-1|KF1|ZFP-103|ZFP103	ring finger protein 103	protein-coding
37644	chr11	22625061	22626430	+	0	NA	promoter-TSS (NM_022725)	promoter-TSS (NM_022725)	78	NM_022725	2188		NM_022725	ENSG00000183161	FANCF	FAF	FA complementation group F	protein-coding
117499	chr19	19865421	19867700	+	0	NA	intron (NM_001331134, intron 1 of 1)	AluSp|SINE|Alu	678	NM_021047	56242		NM_021047	ENSG00000256771	ZNF253	BMZF-1|BMZF1|ZNF411	zinc finger protein 253	protein-coding
106291	chr18	12774751	12775500	+	0	NA	Intergenic	L1MC3|LINE|L1	-25703	NR_110763	100996324		NR_110763		LINC01882	-	long intergenic non-protein coding RNA 1882	ncRNA
22748	chr1	224360871	224361480	+	0	NA	intron (NM_001277198, intron 2 of 4)	AluSz|SINE|Alu	4296	NM_014184	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
144796	chr20	36643201	36643400	+	0	NA	intron (NM_175077, intron 1 of 7)	intron (NM_175077, intron 1 of 7)	2896	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
171359	chr3	196066371	196066530	+	0	NA	intron (NM_001313966, intron 7 of 16)	AluSz6|SINE|Alu	15640	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
227728	chr9	93054551	93055250	+	0	NA	Intergenic	Intergenic	-3788	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
154466	chr22	35544051	35544550	+	0	NA	intron (NM_014310, intron 1 of 2)	intron (NM_014310, intron 1 of 2)	3469	NM_014310	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
6626	chr1	28912721	28912980	+	0	NA	intron (NM_001376022, intron 1 of 20)	AluSq2|SINE|Alu	-1719	NM_001376019	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
19169	chr1	171785801	171786000	+	0	NA	exon (NM_015935, exon 3 of 8)	exon (NM_015935, exon 3 of 8)	4240	NM_014955	51603		NM_014955	ENSG00000010165	METTL13	5630401D24Rik|CGI-01|DFNB26|DFNB26M|DFNM1|EEF1AKNMT|KIAA0859|feat	methyltransferase 13, eEF1A N-terminus and K55	protein-coding
50740	chr12	48990071	48990430	+	0	NA	Intergenic	AluSz|SINE|Alu	-8097	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
188272	chr5	151097871	151098930	+	0	NA	Intergenic	Intergenic	-10715	NM_001252390	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
161757	chr3	44729101	44729880	+	0	NA	promoter-TSS (NM_001258280)	promoter-TSS (NM_001258280)	-116	NM_145044	115560		NM_145044	ENSG00000186446	ZNF501	ZNF|ZNF52	zinc finger protein 501	protein-coding
92306	chr17	8120201	8121200	+	0	NA	3' UTR (NM_001165967, exon 4 of 4)	3' UTR (NM_001165967, exon 4 of 4)	-1784	NM_001165960	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
90863	chr17	2371401	2371600	+	0	NA	intron (NM_001346700, intron 12 of 22)	MIRb|SINE|MIR	29560	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
92455	chr17	8476621	8477100	+	0	NA	intron (NM_005964, intron 40 of 40)	CpG	40976	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
111005	chr19	3045951	3046300	+	0	NA	intron (NM_001144761, intron 1 of 19)	MIR3|SINE|MIR	1510	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
174212	chr4	37681101	37681700	+	0	NA	intron (NM_001085400, intron 1 of 6)	MIRc|SINE|MIR	4976	NM_001085399	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
114685	chr19	13107171	13107630	+	0	NA	intron (NM_001136035, intron 14 of 16)	AluSx1|SINE|Alu	-4542	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
82284	chr16	15521721	15522380	+	0	NA	intron (NM_001142469, intron 2 of 5).2	intron (NM_001142469, intron 2 of 5).2	19784	NM_001142469	89927		NM_033201	ENSG00000166780	BMERB1	C16orf45|MINP	bMERB domain containing 1	protein-coding
230352	chr9	128032451	128032550	+	0	NA	Intergenic	AluSx|SINE|Alu	34820	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
102134	chr17	75077001	75078530	+	0	NA	Intergenic	CpG	-10000	NM_001271765	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
223206	chr8	143585721	143585980	+	0	NA	intron (NM_001330646, intron 2 of 6)	intron (NM_001330646, intron 2 of 6)	-7520	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
8004	chr1	38003151	38003450	+	0	NA	intron (NM_004468, intron 1 of 5)	AluJb|SINE|Alu	2214	NM_004468	2275		NM_004468	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
46322	chr11	125166471	125167130	+	0	NA	intron (NR_168077, intron 1 of 6)	intron (NR_168077, intron 1 of 6)	2049	NM_001382329	63876		NM_022062	ENSG00000165495	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
165543	chr3	101070271	101070650	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-77039	NM_001349329	25890		NM_015429	ENSG00000154175	ABI3BP	NESHBP|TARSH	ABI family member 3 binding protein	protein-coding
193607	chr6	30732701	30733100	+	0	NA	intron (NM_001318875, intron 7 of 11).2	HAL1|LINE|L1	9787	NM_005803	10211		NM_005803	ENSG00000137312	FLOT1	-	flotillin 1	protein-coding
174983	chr4	49647571	49648050	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	661168	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
144768	chr20	36620301	36620700	+	0	NA	intron (NM_175077, intron 5 of 7)	intron (NM_175077, intron 5 of 7)	14721	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
185311	chr5	126762571	126763380	+	0	NA	intron (NR_134485, intron 1 of 3)	AluSx|SINE|Alu	13511	NR_134485	102723557		NR_134485	ENSG00000251072	LMNB1-DT	-	LMNB1 divergent transcript	ncRNA
114418	chr19	12667771	12668150	+	0	NA	TTS (NM_016145)	TTS (NM_016145)	1153	NM_001099737	84292		NM_032332	ENSG00000123154	WDR83	MORG1	WD repeat domain 83	protein-coding
154498	chr22	35663321	35663680	+	0	NA	3' UTR (NM_030641, exon 3 of 3)	3' UTR (NM_030641, exon 3 of 3)	15054	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
73146	chr15	41399921	41401280	+	0	NA	intron (NR_045620, intron 1 of 5)	AluY|SINE|Alu	1896	NR_045620	51103		NM_016013	ENSG00000137806	NDUFAF1	CGI-65|CGI65|CIA30|MC1DN11	NADH:ubiquinone oxidoreductase complex assembly factor 1	protein-coding
104852	chr17	81844071	81844600	+	0	NA	intron (NM_000918, intron 10 of 10)	intron (NM_000918, intron 10 of 10)	-9285	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
175176	chr4	56049921	56050180	+	0	NA	Intergenic	Intergenic	101105	NM_025009	9662		NM_014645	ENSG00000174799	CEP135	CEP4|KIAA0635|MCPH8	centrosomal protein 135	protein-coding
186564	chr5	138473321	138474130	+	0	NA	Intergenic	AluSq|SINE|Alu	8246	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
160423	chr3	28293021	28294050	+	0	NA	intron (NM_001331189, intron 3 of 4)	intron (NM_001331189, intron 3 of 4)	51916	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
171053	chr3	195259201	195261100	+	0	NA	intron (NM_152531, intron 1 of 3)	CpG	11009	NM_152531	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
93249	chr17	17952571	17952930	+	0	NA	intron (NM_001082968, intron 1 of 14)	intron (NM_001082968, intron 1 of 14)	19650	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
207239	chr7	43760351	43760650	+	0	NA	intron (NM_001253823, intron 2 of 8)	intron (NM_001253823, intron 2 of 8)	1820	NM_000712	644		NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA|BVRalpha	biliverdin reductase A	protein-coding
225592	chr9	36139871	36140780	+	0	NA	intron (NM_001287014, intron 1 of 1)	intron (NM_001287014, intron 1 of 1)	3540	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
193957	chr6	31686071	31686880	+	0	NA	TTS (NM_021160).3	TTS (NM_021160).3	-6102	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
173300	chr4	7106401	7107080	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3364	NR_027441	730971		NR_027441		LINC02447	-	long intergenic non-protein coding RNA 2447	ncRNA
137237	chr2	191681221	191681480	+	0	NA	intron (NR_045623, intron 2 of 6)	intron (NR_045623, intron 2 of 6)	3214	NM_001031716	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
216431	chr8	19452721	19452980	+	0	NA	intron (NR_148900, intron 4 of 9)	HAL1b|LINE|L1	138874	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
69640	chr14	97777221	97777480	+	0	NA	Intergenic	Intergenic	-14519	NR_146447	100132612		NR_146447	ENSG00000258869	LINC02312	-	long intergenic non-protein coding RNA 2312	ncRNA
121477	chr19	47110601	47110900	+	0	NA	intron (NM_015168, intron 2 of 14)	intron (NM_015168, intron 2 of 14)	3026	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
44891	chr11	114603401	114604000	+	0	NA	Intergenic	Intergenic	-7914	NM_001077639	54827		NM_017678	ENSG00000137634	NXPE4	C11orf33|FAM55D	neurexophilin and PC-esterase domain family member 4	protein-coding
62871	chr13	110615351	110616940	+	0	NA	intron (NM_001242881, intron 1 of 9)	CpG	517	NM_001242881	55739		NM_018210	ENSG00000213995	NAXD	CARKD|LP3298|PEBEL2	NAD(P)HX dehydratase	protein-coding
44405	chr11	103409621	103409700	+	0	NA	intron (NM_001377, intron 84 of 88)	intron (NM_001377, intron 84 of 88)	300234	NM_001080463	79659		NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding
53506	chr12	66693851	66694180	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-14939	NM_001178074	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
237301	chrX	115874071	115874630	+	0	NA	intron (NR_147172, intron 2 of 2)	CpG	33386	NR_147172	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
57704	chr12	122859971	122860800	+	0	NA	intron (NM_003959, intron 26 of 31)	intron (NM_003959, intron 26 of 31)	24928	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
189589	chr5	175650971	175651130	+	0	NA	Intergenic	AluSz|SINE|Alu	-7021	NR_160284	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
148295	chr20	63714901	63715300	+	0	NA	intron (NM_181485, intron 2 of 6)	AluJb|SINE|Alu	7061	NM_181485	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
98688	chr17	47882251	47882880	+	0	NA	Intergenic	Intergenic	13251	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
131887	chr2	98733771	98734600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3053	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
8494	chr1	40832851	40833030	+	0	NA	intron (NM_172163, intron 9 of 12)	intron (NM_172163, intron 9 of 12)	29423	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
201889	chr6	150981021	150981380	+	0	NA	intron (NM_015440, intron 20 of 27)	MER119|DNA|hAT-Charlie	-25808	NM_001350490	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
48349	chr12	9361951	9362250	+	0	NA	Intergenic	Intergenic	-5364	NR_120479	101930452		NR_120479	ENSG00000260423	LINC02367	-	long intergenic non-protein coding RNA 2367	ncRNA
4951	chr1	23974001	23974280	+	0	NA	intron (NM_001191007, intron 3 of 5)	AluSx3|SINE|Alu	6187	NM_001191009	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
30600	chr10	80161471	80162130	+	0	NA	intron (NM_145868, intron 12 of 15)	intron (NM_145868, intron 12 of 15)	29070	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
237034	chrX	102876771	102876950	+	0	NA	intron (NR_146591, intron 5 of 9)	L1PA4|LINE|L1	-60412	NM_001031834	282808		NM_001031834	ENSG00000102128	RAB40AL	MRXSMP|RAR2|RLGP	RAB40A like	protein-coding
88850	chr16	87603351	87603450	+	0	NA	exon (NM_001271605, exon 1 of 2)	exon (NM_001271605, exon 1 of 2)	892	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
89802	chr16	89514671	89515030	+	0	NA	intron (NM_199367, intron 3 of 9)	AluSx1|SINE|Alu	6447	NM_003119	6687		NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7 matrix AAA peptidase subunit, paraplegin	protein-coding
75450	chr15	65827151	65827530	+	0	NA	Intergenic	LTR33|LTR|ERVL	-35047	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
172028	chr4	994001	994800	+	0	NA	promoter-TSS (NM_213613)	promoter-TSS (NM_213613)	-996	NM_022042	10861		NM_022042	ENSG00000145217	SLC26A1	CAON|CAON1|EDM4|HYSULF|SAT-1|SAT1	solute carrier family 26 member 1	protein-coding
42581	chr11	72004051	72004550	+	0	NA	exon (NM_006185, exon 25 of 27)	exon (NM_006185, exon 25 of 27)	4373	NM_001145055	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
189660	chr5	176359671	176360300	+	0	NA	intron (NR_109800, intron 1 of 4)	intron (NR_109800, intron 1 of 4)	1779	NM_020444	57179		NM_020444	ENSG00000122203	KIAA1191	p33MONOX|p60MONOX	KIAA1191	protein-coding
62178	chr13	97387251	97387630	+	0	NA	intron (NM_001382686, intron 7 of 7)	intron (NM_001382686, intron 7 of 7)	-46729	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
44198	chr11	96277901	96278100	+	0	NA	intron (NM_032427, intron 1 of 4)	MER5A|DNA|hAT-Charlie	-63438	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
92937	chr17	16922451	16922550	+	0	NA	TTS (NR_147084)	TTS (NR_147084)	10676	NR_147084	96597		NR_147084		TBC1D27P	TBC1D27	TBC1 domain family member 27, pseudogene	pseudo
180293	chr5	4189301	4189500	+	0	NA	Intergenic	Intergenic	-584081	NR_104619	101929153		NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
71317	chr14	105389071	105389230	+	0	NA	intron (NM_001100913, intron 19 of 24)	intron (NM_001100913, intron 19 of 24)	-9388	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
138817	chr2	216318421	216318680	+	0	NA	intron (NM_020814, intron 1 of 3)	L2a|LINE|L2	53933	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
208819	chr7	73662201	73662400	+	0	NA	Intergenic	AluY|SINE|Alu	-5531	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
165372	chr3	93841601	93841880	+	0	NA	Intergenic	AluSg|SINE|Alu	132156	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
191031	chr6	3156221	3158650	+	0	NA	exon (NM_001069, exon 1 of 4)	exon (NM_001069, exon 1 of 4)	109	NM_001310315	7280		NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
140843	chr2	237060821	237061100	+	0	NA	Intergenic	Intergenic	-4793	NR_135202	93463		NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA
53434	chr12	65163801	65164200	+	0	NA	Intergenic	MIRb|SINE|MIR	-5583	NM_001167614	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
142070	chr20	2264851	2264950	+	0	NA	Intergenic	L1PA6|LINE|L1	-31101	NM_003245	7053		NM_003245	ENSG00000125780	TGM3	TGE|UHS2	transglutaminase 3	protein-coding
199498	chr6	118666351	118667030	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	-15099	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
158727	chr3	8623021	8623350	+	0	NA	intron (NM_001256748, intron 11 of 11)	intron (NM_001256748, intron 11 of 11)	21613	NR_046358	51066		NM_015931	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog	protein-coding
175568	chr4	75642101	75642380	+	0	NA	TTS (NM_203504)	TTS (NM_203504)	-11712	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
137548	chr2	197228801	197229000	+	0	NA	intron (NM_153697, intron 1 of 9)	AluSq2|SINE|Alu	30909	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
85785	chr16	56943821	56944430	+	0	NA	3' UTR (NM_001272103, exon 8 of 8)	3' UTR (NM_001272103, exon 8 of 8)	11983	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
191304	chr6	6687001	6687350	+	0	NA	Intergenic	Intergenic	-64349	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
24281	chr1	236509971	236510330	+	0	NA	Intergenic	MER34D|LTR|ERV1	-8064	NM_201545	3964		NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
3767	chr1	16684821	16685280	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	3795	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
144229	chr20	34390701	34391050	+	0	NA	intron (NM_031483, intron 2 of 24)	AluSq2|SINE|Alu	27602	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
92866	chr17	16385451	16385750	+	0	NA	Intergenic	AluJo|SINE|Alu	4135	NM_001281717	7314		NM_018955	ENSG00000170315	UBB	HEL-S-50	ubiquitin B	protein-coding
90303	chr17	1062671	1063030	+	0	NA	intron (NM_001282149, intron 5 of 17).3	intron (NM_001282149, intron 5 of 17).3	16143	NM_001282149	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
200476	chr6	135182201	135183500	+	0	NA	intron (NR_134961, intron 1 of 15)	CpG	1542	NM_001161657	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
152071	chr22	19728471	19728730	+	0	NA	Intergenic	L2b|LINE|L2	5061	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
96001	chr17	39208871	39209150	+	0	NA	Intergenic	Intergenic	8687	NM_001330200	6143		NM_000981	ENSG00000108298	RPL19	L19|eL19	ribosomal protein L19	protein-coding
70915	chr14	104108071	104108230	+	0	NA	intron (NM_001080464, intron 12 of 15)	intron (NM_001080464, intron 12 of 15)	-9255	NR_029620	406986		NR_029620	ENSG00000207568	MIR203A	MIR203|MIRN203|hsa-mir-203a|miR-203|miRNA203|mir-203a	microRNA 203a	ncRNA
188370	chr5	151781321	151781780	+	0	NA	intron (NM_198395, intron 1 of 11)	Tigger2b_Pri|DNA|TcMar-Tigger	-9374	NR_132345	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
21043	chr1	203075651	203076150	+	0	NA	intron (NM_001304332, intron 28 of 28)	CpG	-7895	NR_160550	114004358		NR_160550		MYOPARR	-	myogenin promoter associated myogenic regulatory antisense long non coding RNA	ncRNA
197800	chr6	87694351	87694800	+	0	NA	intron (NM_018064, intron 1 of 4)	intron (NM_018064, intron 1 of 4)	7658	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
215451	chr7	157886321	157886780	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	31965	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
188845	chr5	159185021	159185280	+	0	NA	intron (NM_001199383, intron 3 of 10)	L4_A_Mam|LINE|RTE-X	22498	NM_001199382	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
53252	chr12	62606621	62606880	+	0	NA	Intergenic	AluJr|SINE|Alu	3064	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
225404	chr9	35050671	35050850	+	0	NA	Intergenic	AluJb|SINE|Alu	8520	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
95732	chr17	38581521	38581780	+	0	NA	intron (NM_025248, intron 1 of 18)	MER113A|DNA|hAT-Charlie	24302	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
228715	chr9	109101521	109102630	+	0	NA	intron (NM_032012, intron 3 of 17)	intron (NM_032012, intron 3 of 17)	17872	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
36469	chr11	6196351	6196850	+	0	NA	Intergenic	Intergenic	-2624	NM_001005178	120787		NM_001005178	ENSG00000175485	OR52W1	OR11-71|OR52W1P	olfactory receptor family 52 subfamily W member 1	protein-coding
170535	chr3	186686271	186686670	+	0	NA	Intergenic	Intergenic	20456	NM_000412	3273		NM_000412	ENSG00000113905	HRG	HPRG|HRGP|THPH11	histidine rich glycoprotein	protein-coding
109843	chr19	1206881	1208800	+	0	NA	intron (NM_000455, intron 1 of 9)	intron (NM_000455, intron 1 of 9)	2062	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
151629	chr22	16354651	16354930	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	238020	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
180140	chr5	1339051	1339750	+	0	NA	intron (NM_030782, intron 3 of 16)	intron (NM_030782, intron 3 of 16)	5699	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
111936	chr19	4759221	4760250	+	0	NA	Intergenic	Intergenic	-9370	NR_027148	284424		NM_174947	ENSG00000176840	MIR7-3HG	C19orf30|Huh7|LINC00306|NCRNA00306|PGSF1|uc002mbe.2	MIR7-3 host gene	ncRNA
101878	chr17	74296421	74296880	+	0	NA	intron (NR_148379, intron 5 of 12)	L1M4|LINE|L1	22416	NM_023036	64446		NM_023036	ENSG00000171595	DNAI2	CILD9|DIC2|oda6	dynein axonemal intermediate chain 2	protein-coding
88496	chr16	85181971	85182250	+	0	NA	Intergenic	Intergenic	-25686	NR_162142	113219463		NR_162142		MIR12128	-	microRNA 12128	ncRNA
87357	chr16	70378271	70379250	+	0	NA	3' UTR (NM_006927, exon 7 of 7)	3' UTR (NM_006927, exon 7 of 7)	31857	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
79950	chr16	1765421	1766000	+	0	NA	intron (NM_001318852, intron 20 of 31)	intron (NM_001318852, intron 20 of 31)	5999	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
10197	chr1	61782651	61783550	+	0	NA	intron (NM_176877, intron 7 of 42)	intron (NM_176877, intron 7 of 42)	40620	NM_176877	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
46174	chr11	123118901	123119100	+	0	NA	intron (NM_024769, intron 1 of 6)	(TC)n|Simple_repeat|Simple_repeat	-56864	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
91298	chr17	4199901	4200330	+	0	NA	intron (NM_001330063, intron 7 of 24)	AluJb|SINE|Alu	56418	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
34386	chr10	132329571	132330480	+	0	NA	TTS (NM_001318883)	TTS (NM_001318883)	1855	NM_001318882	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
115275	chr19	14555821	14556080	+	0	NA	intron (NM_001321170, intron 2 of 13)	L2a|LINE|L2	16116	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
22862	chr1	225476621	225477150	+	0	NA	Intergenic	Intergenic	-48030	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
75896	chr15	69782901	69783100	+	0	NA	Intergenic	L1ME4a|LINE|L1	-52234	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
45597	chr11	118896621	118897330	+	0	NA	TTS (NM_032966)	TTS (NM_032966)	3583	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
78902	chr15	101127421	101128130	+	0	NA	Intergenic	Intergenic	124273	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
221785	chr8	127957451	127958150	+	0	NA	intron (NR_003367, intron 3 of 8)	intron (NR_003367, intron 3 of 8)	-2833	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
163059	chr3	49937951	49938050	+	0	NA	Intergenic	Intergenic	-2150	NM_001349192	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
122505	chr19	49585921	49586500	+	0	NA	intron (NM_000951, intron 4 of 6)	AluJb|SINE|Alu	4894	NM_001316335	5639		NM_000951	ENSG00000126460	PRRG2	PRGP2	proline rich and Gla domain 2	protein-coding
84627	chr16	30706851	30707350	+	0	NA	intron (NM_006662, intron 4 of 33)	MIRb|SINE|MIR	-3437	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
223153	chr8	143527421	143527880	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	13797	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
74015	chr15	52173321	52173580	+	0	NA	intron (NM_016194, intron 3 of 12)	L2a|LINE|L2	6241	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
25736	chr10	9065121	9065380	+	0	NA	Intergenic	Intergenic	167261	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
78371	chr15	91471351	91471700	+	0	NA	intron (NR_110106, intron 1 of 3)	L2|LINE|L2	8186	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
5965	chr1	26917871	26918230	+	0	NA	Intergenic	L1MC4|LINE|L1	-3693	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
124386	chr19	58391471	58392100	+	0	NA	intron (NM_001009, intron 2 of 5)	AluSx|SINE|Alu	-1579	NR_162103	113218487		NR_162103		MIR10394	-	microRNA 10394	ncRNA
167516	chr3	129272551	129272850	+	0	NA	TTS (NR_106884)	TTS (NR_106884)	554	NR_106884	102465496		NR_106884	ENSG00000278658	MIR6826	hsa-mir-6826	microRNA 6826	ncRNA
172539	chr4	2363271	2363580	+	0	NA	intron (NM_020972, intron 1 of 12)	MER70B|LTR|ERVL	1389	NM_001172660	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
62962	chr13	112286351	112286450	+	0	NA	Intergenic	Intergenic	-13400	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
143921	chr20	32665201	32665600	+	0	NA	intron (NM_182584, intron 1 of 5)	intron (NM_182584, intron 1 of 5)	8541	NM_182584	284805		NM_182584	ENSG00000198547	C20orf203	-	chromosome 20 open reading frame 203	protein-coding
32551	chr10	103333971	103334200	+	0	NA	intron (NM_032154, intron 3 of 6)	intron (NM_032154, intron 3 of 6)	17055	NM_032154	84108		NM_032154	ENSG00000156374	PCGF6	MBLR|RNF134	polycomb group ring finger 6	protein-coding
210967	chr7	101687721	101688700	+	0	NA	Intergenic	Intergenic	-58914	NM_138403	93408		NM_138403	ENSG00000106436	MYL10	MYLC2PL|PLRLC	myosin light chain 10	protein-coding
164569	chr3	64008601	64009180	+	0	NA	intron (NR_038286, intron 1 of 2)	intron (NR_038286, intron 1 of 2)	4868	NR_038286	100507062		NR_038286	ENSG00000239653	PSMD6-AS2	-	PSMD6 antisense RNA 2	ncRNA
207987	chr7	55449051	55449350	+	0	NA	Intergenic	CpG	77680	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
137989	chr2	201235551	201235850	+	0	NA	intron (NM_033355, intron 2 of 9)	L1MA10|LINE|L1	2237	NM_033358	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
233422	chr9	137599901	137600680	+	0	NA	Intergenic	AluY|SINE|Alu	-5350	NM_001317968	92714		NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
194789	chr6	34207921	34208180	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-28823	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
128181	chr2	53786251	53787900	+	0	NA	promoter-TSS (NM_001201965)	promoter-TSS (NM_001201965)	31	NM_015701	27248		NM_015701	ENSG00000068912	ERLEC1	C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB	endoplasmic reticulum lectin 1	protein-coding
102182	chr17	75149121	75149650	+	0	NA	intron (NM_001002033, intron 1 of 5)	AluY|SINE|Alu	3908	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
167831	chr3	133674271	133674700	+	0	NA	intron (NM_001354703, intron 1 of 22)	CpG	12487	NM_001354703	7018		NM_001063	ENSG00000091513	TF	HEL-S-71p|PRO1557|PRO2086|TFQTL1	transferrin	protein-coding
71359	chr14	105478701	105480130	+	0	NA	intron (NR_073081, intron 4 of 5)	intron (NR_073081, intron 4 of 5)	2172	NR_073085	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
75351	chr15	65515151	65515450	+	0	NA	intron (NR_135485, intron 1 of 20)	intron (NR_135485, intron 1 of 20)	1974	NR_135486	54878		NM_017743	ENSG00000074603	DPP8	DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141	dipeptidyl peptidase 8	protein-coding
49394	chr12	22460771	22461030	+	0	NA	intron (NM_001385333, intron 23 of 27)	intron (NM_001385333, intron 23 of 27)	83297	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
161000	chr3	37265921	37266380	+	0	NA	intron (NM_002078, intron 2 of 23)	intron (NM_002078, intron 2 of 23)	-21955	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
55699	chr12	107759101	107759780	+	0	NA	intron (NR_120474, intron 4 of 4)	intron (NR_120474, intron 4 of 4)	1697	NM_012406	11108		NM_012406	ENSG00000110851	PRDM4	PFM1	PR/SET domain 4	protein-coding
51691	chr12	53156501	53156900	+	0	NA	TTS (NM_015989)	TTS (NM_015989)	7793	NM_001244706	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
14929	chr1	147558121	147558380	+	0	NA	intron (NM_004326, intron 1 of 9)	MIRb|SINE|MIR	16749	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
732	chr1	1467501	1467880	+	0	NA	intron (NM_001039211, intron 11 of 11)	intron (NM_001039211, intron 11 of 11)	-4075	NM_031921	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
163353	chr3	50437651	50438130	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	65744	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
164680	chr3	67593901	67594150	+	0	NA	intron (NM_001177599, intron 2 of 10)	intron (NM_001177599, intron 2 of 10)	60587	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
9038	chr1	44788901	44789100	+	0	NA	promoter-TSS (NM_153274)	promoter-TSS (NM_153274)	-830	NM_153274	266675		NM_153274	ENSG00000142959	BEST4	VMD2L2	bestrophin 4	protein-coding
84974	chr16	31430471	31430830	+	0	NA	Intergenic	Intergenic	-2290	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
6075	chr1	27153701	27154200	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	1175	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
120509	chr19	44808421	44809680	+	0	NA	promoter-TSS (NM_005581)	promoter-TSS (NM_005581)	-9	NM_001013257	4059		NM_005581	ENSG00000187244	BCAM	AU|B-CAM|CD239|F8/G253|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
89362	chr16	88776421	88777080	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	8470	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
213139	chr7	131422501	131422900	+	0	NA	intron (NM_001145354, intron 9 of 18)	intron (NM_001145354, intron 9 of 18)	94824	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
121111	chr19	45969451	45970150	+	0	NA	intron (NM_002516, intron 1 of 3)	intron (NM_002516, intron 1 of 3)	4065	NM_002516	4858		NM_002516	ENSG00000104967	NOVA2	ANOVA|NEDASB|NOVA-2|NOVA3	NOVA alternative splicing regulator 2	protein-coding
153920	chr22	30321651	30321750	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	5241	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
204441	chr7	3461001	3461200	+	0	NA	intron (NM_152744, intron 1 of 44)	L1M5|LINE|L1	159848	NM_152744	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
122164	chr19	48893371	48893730	+	0	NA	intron (NM_003323, intron 6 of 12)	AluSx|SINE|Alu	5194	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
174310	chr4	38600521	38600780	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	36647	NR_146991	105374411		NR_146991		LINC02278	-	long intergenic non-protein coding RNA 2278	ncRNA
198007	chr6	90097971	90098730	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	198493	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
168211	chr3	141242951	141243690	+	0	NA	intron (NM_152282, intron 3 of 7)	intron (NM_152282, intron 3 of 7)	11495	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
175596	chr4	75686121	75687050	+	0	NA	Intergenic	Intergenic	-13102	NM_203504	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
113408	chr19	9580701	9580900	+	0	NA	intron (NM_001308269, intron 1 of 4)	ERVL-B4-int|LTR|ERVL	3704	NM_001008727	7675		NM_001008727	ENSG00000197961	ZNF121	D19S204|ZHC32|ZNF20	zinc finger protein 121	protein-coding
230250	chr9	127895901	127896700	+	0	NA	exon (NM_013443, exon 3 of 7)	exon (NM_013443, exon 3 of 7)	1108	NM_001287001	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
77294	chr15	82333351	82333650	+	0	NA	intron (NR_045529, intron 23 of 23)	intron (NR_045529, intron 23 of 23)	15975	NM_001164465	647042		NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family like 10	protein-coding
225172	chr9	33852151	33852550	+	0	NA	intron (NM_017811, intron 1 of 4)	intron (NM_017811, intron 1 of 4)	35190	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
146502	chr20	49892101	49892300	+	0	NA	TTS (NR_048538)	TTS (NR_048538)	21539	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
199466	chr6	117907021	117907850	+	0	NA	5' UTR (NM_001029858, exon 1 of 8)	5' UTR (NM_001029858, exon 1 of 8)	171	NM_001029858	222553		NM_001029858	ENSG00000196376	SLC35F1	C6orf169|dJ230I3.1	solute carrier family 35 member F1	protein-coding
237082	chrX	103711391	103711980	+	0	NA	intron (NM_182541, intron 1 of 2)	intron (NM_182541, intron 1 of 2)	776	NM_182541	203562		NM_182541	ENSG00000179363	TMEM31	-	transmembrane protein 31	protein-coding
224216	chr9	5600171	5600900	+	0	NA	Intergenic	Intergenic	-28572	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
144047	chr20	33655901	33656100	+	0	NA	Intergenic	AluSx|SINE|Alu	-6327	NM_080825	128864		NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
80074	chr16	1989521	1990800	+	0	NA	exon (NM_004209, exon 1 of 4)	exon (NM_004209, exon 1 of 4)	190	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
227269	chr9	89371501	89373300	+	0	NA	intron (NR_163887, intron 13 of 15)	(TG)n|Simple_repeat|Simple_repeat	53549	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
10029	chr1	56831921	56832280	+	0	NA	Intergenic	Intergenic	-12696	NM_001004303	199920		NM_001004303	ENSG00000187889	FYB2	ARAP|C1orf168	FYN binding protein 2	protein-coding
194617	chr6	33560271	33560630	+	0	NA	Intergenic	AluSx1|SINE|Alu	19826	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
17112	chr1	156155071	156156880	+	0	NA	intron (NM_001370567, intron 1 of 13)	intron (NM_001370567, intron 1 of 13)	1427	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
188527	chr5	155827971	155828330	+	0	NA	Intergenic	MIR|SINE|MIR	-499014	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
219326	chr8	70172351	70173100	+	0	NA	intron (NM_001321713, intron 4 of 21)	intron (NM_001321713, intron 4 of 21)	-101473	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
70727	chr14	103351021	103351370	+	0	NA	Intergenic	AluSz6|SINE|Alu	13346	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
64139	chr14	22876601	22876800	+	0	NA	exon (NM_001329226, exon 6 of 8)	exon (NM_001329226, exon 6 of 8)	4960	NM_001329226	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
161281	chr3	39291601	39292250	+	0	NA	Intergenic	Intergenic	-10190	NM_001171174	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
173202	chr4	6792471	6792630	+	0	NA	intron (NM_001100590, intron 1 of 8)	intron (NM_001100590, intron 1 of 8)	9818	NM_001100590	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
155473	chr22	38491551	38492350	+	0	NA	intron (NM_006386, intron 11 of 12)	intron (NM_006386, intron 11 of 12)	14361	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
38331	chr11	44523501	44523850	+	0	NA	Intergenic	Intergenic	-41988	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
198834	chr6	109222921	109223180	+	0	NA	intron (NR_152435, intron 11 of 45)	L1MD3|LINE|L1	57219	NR_152435	221262		NM_173671	ENSG00000203799	CCDC162P	C6orf183|C6orf184|C6orf185|CCDC162	coiled-coil domain containing 162, pseudogene	pseudo
154075	chr22	30745571	30745730	+	0	NA	intron (NM_030758, intron 2 of 13)	AluSx1|SINE|Alu	14093	NR_036171	100422912		NR_036171	ENSG00000264661	MIR3200	mir-3200	microRNA 3200	ncRNA
98232	chr17	46158271	46158730	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSz6|SINE|Alu	34282	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
222333	chr8	133525851	133525950	+	0	NA	intron (NM_173344, intron 2 of 9)	MER52A|LTR|ERV1	45987	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
64337	chr14	23988251	23990200	+	0	NA	intron (NM_198083, intron 1 of 7)	intron (NM_198083, intron 1 of 7)	294	NM_001282988	10901		NM_021004	ENSG00000157326	DHRS4	CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2	dehydrogenase/reductase 4	protein-coding
210355	chr7	99564601	99565650	+	0	NA	TTS (NM_001085367)	TTS (NM_001085367)	6291	NM_001363334	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
220035	chr8	91071601	91071800	+	0	NA	intron (NM_016023, intron 2 of 6)	intron (NM_016023, intron 2 of 6)	1356	NM_016023	51633		NM_016023	ENSG00000155100	OTUD6B	CGI-77|DUBA-5|DUBA5|IDDFSDA	OTU deubiquitinase 6B	protein-coding
134682	chr2	144479121	144479380	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-40364	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
212053	chr7	114972421	114973850	+	0	NA	intron (NM_199072, intron 3 of 4)	(TA)n|Simple_repeat|Simple_repeat	50981	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
187071	chr5	140156101	140156300	+	0	NA	Intergenic	Intergenic	-1119	NR_130738	101929719		NR_130738	ENSG00000254363	LOC101929719	-	uncharacterized LOC101929719	ncRNA
131002	chr2	87810421	87810680	+	0	NA	intron (NM_001382344, intron 6 of 22).2	intron (NM_001382344, intron 6 of 22).2	15217	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
58366	chr12	131683901	131684430	+	0	NA	Intergenic	Intergenic	-26925	NM_004592	6433		NM_004592	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor SWAP	protein-coding
9994	chr1	55138621	55139500	+	0	NA	intron (NM_015306, intron 24 of 67)	LFSINE_Vert|SINE|tRNA	76304	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
94802	chr17	31250001	31250400	+	0	NA	intron (NM_000267, intron 30 of 56)	intron (NM_000267, intron 30 of 56)	47039	NM_002544	4974		NM_002544	ENSG00000126861	OMG	OMGP	oligodendrocyte myelin glycoprotein	protein-coding
119374	chr19	40165321	40166000	+	0	NA	Intergenic	Intergenic	-25766	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
88285	chr16	83952821	83953500	+	0	NA	promoter-TSS (NM_182981)	promoter-TSS (NM_182981)	-80	NM_182981	29948		NM_013370	ENSG00000140961	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
6112	chr1	27338721	27339300	+	0	NA	Intergenic	Intergenic	-3012	NM_032872	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
146935	chr20	51801051	51801150	+	0	NA	intron (NM_001318031, intron 1 of 3)	CpG	1421	NM_001318031	57167		NM_020436	ENSG00000101115	SALL4	DRRS|HSAL4|IVIC|ZNF797	spalt like transcription factor 4	protein-coding
108759	chr18	77123151	77123800	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	9308	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
238757	chrX	154345471	154345730	+	0	NA	Intergenic	Intergenic	29034	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
81593	chr16	10362221	10362780	+	0	NA	Intergenic	LTR77|LTR|ERV1	-23561	NM_024997	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
98454	chr17	47066701	47067850	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-88022	NM_203400	388394		NM_203400	ENSG00000179673	RPRML	-	reprimo like	protein-coding
28236	chr10	45442551	45442850	+	0	NA	intron (NM_001256153, intron 9 of 13).2	intron (NM_001256153, intron 9 of 13).2	10421	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
197214	chr6	63649121	63649380	+	0	NA	intron (NM_001370348, intron 2 of 15)	intron (NM_001370348, intron 2 of 15)	2724	NM_015153	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
211028	chr7	102416971	102418080	+	0	NA	intron (NR_038967, intron 8 of 8)	L1MC3|LINE|L1	-11670	NR_031669	100313829		NR_031669	ENSG00000221510	MIR548O	MIRN548O	microRNA 548o	ncRNA
167337	chr3	128749201	128749930	+	0	NA	intron (NM_004637, intron 1 of 5)	THE1B|LTR|ERVL-MaLR	23382	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
101907	chr17	74437521	74437980	+	0	NA	intron (NM_018653, intron 1 of 3)	Tigger16a|DNA|TcMar-Tigger	4053	NM_018653	55890		NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding
239041	chrY	7159501	7159800	+	0	NA	Intergenic	L1PA2|LINE|L1	-114322	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
57930	chr12	123586471	123586630	+	0	NA	intron (NM_006815, intron 1 of 3)	AluSz|SINE|Alu	1998	NM_001321445	10959		NM_006815	ENSG00000086598	TMED2	P24A|RNP24|p24|p24b1|p24beta1	transmembrane p24 trafficking protein 2	protein-coding
231909	chr9	133093351	133093650	+	0	NA	Intergenic	AluSq2|SINE|Alu	10961	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
225068	chr9	33262551	33263000	+	0	NA	exon (NM_004323, exon 2 of 7)	exon (NM_004323, exon 2 of 7)	1933	NM_004323	573		NM_004323	ENSG00000107262	BAG1	BAG-1|HAP|RAP46	BAG cochaperone 1	protein-coding
86916	chr16	68077421	68078330	+	0	NA	intron (NM_001271763, intron 13 of 14)	intron (NM_001271763, intron 13 of 14)	-7495	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
130447	chr2	85431121	85431380	+	0	NA	5' UTR (NM_201594, exon 12 of 21)	5' UTR (NM_201594, exon 12 of 21)	12319	NM_201594								
200449	chr6	135056651	135056950	+	0	NA	Intergenic	Intergenic	-1978	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
124501	chr19	58579901	58580430	+	0	NA	intron (NR_026052, intron 1 of 1)	AluSp|SINE|Alu	4766	NR_026052	65996		NM_023939	ENSG00000293115	CENPBD2P	CENPBD1P1	CENPB DNA-binding domains containing 2, pseudogene	pseudo
177739	chr4	122458371	122459400	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-2160	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
162716	chr3	49009621	49010330	+	0	NA	intron (NM_001320547, intron 1 of 5)	AluJb|SINE|Alu	2370	NM_001320547	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
114554	chr19	12887721	12888400	+	0	NA	promoter-TSS (NM_006563)	promoter-TSS (NM_006563)	-859	NM_006563	10661		NM_006563	ENSG00000105610	KLF1	EKLF|EKLF/KLF1	KLF transcription factor 1	protein-coding
96873	chr17	42070201	42070580	+	0	NA	intron (NM_001378270, intron 1 of 8)	intron (NM_001378270, intron 1 of 8)	-19789	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
33767	chr10	122558051	122558750	+	0	NA	Intergenic	Intergenic	-2354	NM_001320644	1755		NM_004406	ENSG00000187908	DMBT1	GP340|SAG|SALSA|muclin	deleted in malignant brain tumors 1	protein-coding
160561	chr3	30687471	30687630	+	0	NA	intron (NM_001024847, intron 6 of 7)	intron (NM_001024847, intron 6 of 7)	80949	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
71157	chr14	105019151	105019450	+	0	NA	intron (NM_017955, intron 1 of 1)	intron (NM_017955, intron 1 of 1)	1783	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
24806	chr10	127751	128200	+	0	NA	Intergenic	Intergenic	-2113	NM_001370103	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
7763	chr1	36177871	36178250	+	0	NA	exon (NM_018067, exon 9 of 17)	exon (NM_018067, exon 9 of 17)	21900	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
231659	chr9	131661871	131662500	+	0	NA	intron (NM_001377935, intron 1 of 26)	L2|LINE|L2	-10782	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
204712	chr7	5536721	5537580	+	0	NA	Intergenic	Intergenic	-6549	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
43332	chr11	76443971	76446300	+	0	NA	intron (NM_001300942, intron 1 of 21)	CpG	110	NM_020193	56946		NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY transcriptional repressor, BRCA2 interacting	protein-coding
42852	chr11	73236871	73237030	+	0	NA	3' UTR (NM_002564, exon 3 of 3)	3' UTR (NM_002564, exon 3 of 3)	18388	NM_176071	5029		NM_002564	ENSG00000175591	P2RY2	HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R	purinergic receptor P2Y2	protein-coding
101657	chr17	68285001	68285200	+	0	NA	intron (NM_001174166, intron 1 of 6)	intron (NM_001174166, intron 1 of 6)	6027	NM_001174166	9120		NM_004694	ENSG00000108932	SLC16A6	MCT6|MCT7	solute carrier family 16 member 6	protein-coding
6027	chr1	27106751	27108180	+	0	NA	intron (NR_046474, intron 3 of 10)	(CA)n|Simple_repeat|Simple_repeat	47660	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
103866	chr17	79745401	79746730	+	0	NA	Intergenic	AluSq2|SINE|Alu	15122	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
205529	chr7	19051771	19051930	+	0	NA	Intergenic	L1PA6|LINE|L1	65786	NM_000474	7291		NM_000474	ENSG00000122691	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
1193	chr1	2243051	2243880	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	15146	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
190781	chr6	558121	558450	+	0	NA	intron (NM_018303, intron 17 of 27)	intron (NM_018303, intron 17 of 27)	98679	NM_148959	135458		NM_148959	ENSG00000188996	HUS1B	-	HUS1 checkpoint clamp component B	protein-coding
135527	chr2	162153651	162154380	+	0	NA	intron (NR_110255, intron 1 of 3)	(TGTCTC)n|Simple_repeat|Simple_repeat	-1768	NM_002054	2641		NM_002054	ENSG00000115263	GCG	GLP-1|GLP1|GLP2|GRPP	glucagon	protein-coding
64906	chr14	35401011	35401800	+	0	NA	TTS (NM_020529)	TTS (NM_020529)	3344	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
225096	chr9	33415171	33416350	+	0	NA	Intergenic	Intergenic	-13078	NM_001318156	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
108931	chr18	79467071	79467230	+	0	NA	intron (NM_172389, intron 7 of 9)	intron (NM_172389, intron 7 of 9)	66851	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
52797	chr12	56722971	56723130	+	0	NA	intron (NM_001365896, intron 2 of 8)	intron (NM_001365896, intron 2 of 8)	2249	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
122932	chr19	50672951	50673250	+	0	NA	intron (NM_016148, intron 21 of 23)	LTR16A1|LTR|ERVL	23655	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
109221	chr19	484871	485430	+	0	NA	intron (NM_001385599, intron 2 of 4)	intron (NM_001385599, intron 2 of 4)	6474	NM_001385599	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
170652	chr3	187132821	187133280	+	0	NA	intron (NM_052969, intron 1 of 2)	L1MCc|LINE|L1	6446	NM_052969	116832		NM_052969	ENSG00000163923	RPL39L	L39-2|RPL39L1	ribosomal protein L39 like	protein-coding
202445	chr6	158025951	158027250	+	0	NA	intron (NM_003898, intron 2 of 26)	intron (NM_003898, intron 2 of 26)	9507	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
61342	chr13	50891501	50891700	+	0	NA	intron (NR_046552, intron 1 of 2)	intron (NR_046552, intron 1 of 2)	-18078	NM_001142279	79621		NM_024570	ENSG00000136104	RNASEH2B	AGS2|DLEU8	ribonuclease H2 subunit B	protein-coding
206058	chr7	27158971	27159630	+	0	NA	Intergenic	Intergenic	-2625	NM_006896	3204		NM_006896	ENSG00000122592	HOXA7	ANTP|HOX1|HOX1.1|HOX1A	homeobox A7	protein-coding
233950	chrX	2583601	2584580	+	0	NA	Intergenic	CpG	-25101	NR_106737	102464837		NR_106737	ENSG00000277120	MIR6089	MIR6089-1|MIR6089-2|hsa-mir-6089-1|hsa-mir-6089-2	microRNA 6089	ncRNA
227137	chr9	86278251	86278580	+	0	NA	intron (NM_030940, intron 1 of 3)	AluJr|SINE|Alu	4123	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
10399	chr1	65068601	65069730	+	0	NA	Intergenic	Intergenic	-1419	NM_001321852	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
103898	chr17	79804071	79805000	+	0	NA	Intergenic	CpG-11773	-7458	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
113064	chr19	8196401	8196600	+	0	NA	Intergenic	AluJr|SINE|Alu	-12870	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
87159	chr16	69320271	69320830	+	0	NA	intron (NM_013245, intron 7 of 10)	intron (NM_013245, intron 7 of 10)	9200	NM_013245	27183		NM_013245	ENSG00000132612	VPS4A	CIMDAG|SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
127705	chr2	43228501	43230150	+	0	NA	TTS (NR_027251)	TTS (NR_027251)	2114	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
44116	chr11	96024771	96025130	+	0	NA	intron (NM_032427, intron 2 of 4)	L1PA16|LINE|L1	-100843	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
153452	chr22	25178371	25178530	+	0	NA	intron (NM_001145206, intron 7 of 10)	intron (NM_001145206, intron 7 of 10)	-21408	NM_004076	1417		NM_004076	ENSG00000100053	CRYBB3	CATCN2|CRYB3|CTRCT22	crystallin beta B3	protein-coding
39046	chr11	47863171	47863930	+	0	NA	Intergenic	Intergenic	-15006	NM_015231	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
135845	chr2	170813921	170814630	+	0	NA	Intergenic	Intergenic	-2415	NM_013445	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
177865	chr4	128454251	128454600	+	0	NA	intron (NR_125882, intron 1 of 8)	intron (NR_125882, intron 1 of 8)	26409	NR_125882	100507487		NR_125882	ENSG00000251432	LINC02615	-	long intergenic non-protein coding RNA 2615	ncRNA
133106	chr2	112636651	112636950	+	0	NA	Intergenic	Intergenic	7380	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
170902	chr3	194001801	194002000	+	0	NA	intron (NR_033944, intron 1 of 2)	intron (NR_033944, intron 1 of 2)	1759	NR_033944	647323		NR_033944	ENSG00000214146	LINC02026	-	long intergenic non-protein coding RNA 2026	ncRNA
149424	chr21	31268121	31268380	+	0	NA	intron (NM_001353692, intron 3 of 27)	L2a|LINE|L2	76104	NM_001353694	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
116627	chr19	18297201	18297600	+	0	NA	Intergenic	L1MB5|LINE|L1	15323	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
135370	chr2	160454021	160454530	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	39532	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
233600	chrX	329721	330200	+	0	NA	Intergenic	AluY|SINE|Alu	10815	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
132748	chr2	109613601	109615200	+	0	NA	promoter-TSS (NM_001321508)	promoter-TSS (NM_001321508)	36	NM_023016	65124		NM_023016	ENSG00000198142	SOWAHC	ANKRD57|C2orf26	sosondowah ankyrin repeat domain family member C	protein-coding
61708	chr13	74091951	74092250	+	0	NA	intron (NM_007249, intron 1 of 7)	AluY|SINE|Alu	41829	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
129608	chr2	70102651	70102750	+	0	NA	Intergenic	Intergenic	15223	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
177601	chr4	120994401	120994600	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-71774	NM_001300823	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
60006	chr13	32515001	32515200	+	0	NA	3' UTR (NM_014887, exon 6 of 6)	3' UTR (NM_014887, exon 6 of 6)	-5705	NR_026928	116828		NR_026928	ENSG00000281026	N4BP2L2-IT2	CG030	N4BPL2 intronic transcript 2	ncRNA
213267	chr7	134643201	134643400	+	0	NA	Intergenic	Intergenic	-3479	NM_001293085	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
140221	chr2	231720871	231721130	+	0	NA	Intergenic	Intergenic	7686	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
212359	chr7	127610521	127610600	+	0	NA	3' UTR (NM_001366111, exon 10 of 10)	3' UTR (NM_001366111, exon 10 of 10)	5467	NM_001366111	5078		NM_006193	ENSG00000106331	PAX4	KPD|MODY9	paired box 4	protein-coding
162133	chr3	46946551	46946650	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	29901	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
95474	chr17	36196531	36197580	+	0	NA	promoter-TSS (NM_021006)	promoter-TSS (NM_021006)	-297	NM_002983	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
19807	chr1	182610901	182611100	+	0	NA	Intergenic	Intergenic	-4140	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
222039	chr8	130227901	130228100	+	0	NA	intron (NM_001362924, intron 4 of 30)	intron (NM_001362924, intron 4 of 30)	68533	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
49024	chr12	14362301	14362750	+	0	NA	Intergenic	Intergenic	-3107	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
20314	chr1	197409671	197409830	+	0	NA	intron (NM_201253, intron 5 of 11)	MIRb|SINE|MIR	141498	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
105544	chr17	83198621	83198900	+	0	NA	Intergenic	Intergenic	-28137	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
174163	chr4	36268921	36269750	+	0	NA	intron (NR_122080, intron 2 of 2)	intron (NR_122080, intron 2 of 2)	-12281	NM_001136536	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
53772	chr12	68776121	68776330	+	0	NA	non-coding (NR_149143, exon 5 of 5)	non-coding (NR_149143, exon 5 of 5)	29269	NR_073494	100130075		NR_073494		SZRD1P1	-	SZRD1 pseudogene 1	pseudo
129958	chr2	73945871	73946630	+	0	NA	intron (NM_080916, intron 2 of 6)	intron (NM_080916, intron 2 of 6)	19370	NM_080918	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
12985	chr1	110902921	110903600	+	0	NA	Intergenic	L1M1|LINE|L1	30112	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
177951	chr4	139011251	139011390	+	0	NA	intron (NR_133945, intron 1 of 2)	intron (NR_133945, intron 1 of 2)	1326	NR_133945	105377448		NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
226695	chr9	75104071	75104230	+	0	NA	intron (NM_012383, intron 1 of 9)	AluJb|SINE|Alu	15636	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
100424	chr17	60641801	60642200	+	0	NA	intron (NM_003620, intron 3 of 5)	intron (NM_003620, intron 3 of 5)	-35851	NM_001320470	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
193443	chr6	30487171	30487530	+	0	NA	Intergenic	AluSp|SINE|Alu	-2159	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
150220	chr21	40940351	40940450	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-93242	NR_073202	1826		NM_001389	ENSG00000171587	DSCAM	CHD2|CHD2-42|CHD2-52	DS cell adhesion molecule	protein-coding
59492	chr13	26557351	26558050	+	0	NA	promoter-TSS (NM_001291965)	promoter-TSS (NM_001291965)	-3	NM_001291965	10810		NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	WASP family member 3	protein-coding
109433	chr19	719271	719500	+	0	NA	intron (NM_002579, intron 1 of 8)	CpG	10450	NM_002579	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
110198	chr19	1701251	1701700	+	0	NA	Intergenic	Intergenic	-48860	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
150118	chr21	37462951	37464150	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	43251	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
126171	chr2	26401851	26402380	+	0	NA	exon (NM_145038, exon 1 of 17)	exon (NM_145038, exon 1 of 17)	195	NM_145038	92749		NM_145038	ENSG00000157856	DRC1	C2orf39|CCDC164|CILD21|SPGF80	dynein regulatory complex subunit 1	protein-coding
171753	chr3	198113471	198113830	+	0	NA	Intergenic	CpG	-32979	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
211137	chr7	102540951	102541850	+	0	NA	intron (NM_001097615, intron 5 of 8)	intron (NM_001097615, intron 5 of 8)	3388	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
173185	chr4	6766201	6766400	+	0	NA	Intergenic	L2c|LINE|L2	-16427	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
33949	chr10	124626721	124628280	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-76528	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
51197	chr12	50509101	50509700	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	4415	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
168354	chr3	141887251	141887350	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	10657	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
26680	chr10	22624271	22624930	+	0	NA	intron (NM_005028, intron 1 of 9)	Charlie7|DNA|hAT-Charlie	89508	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
144068	chr20	33679471	33680400	+	0	NA	exon (NM_005225, exon 3 of 7)	exon (NM_005225, exon 3 of 7)	-5507	NM_031232	63941		NM_031231	ENSG00000125967	NECAB3	APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5	N-terminal EF-hand calcium binding protein 3	protein-coding
182191	chr5	56816401	56817850	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	1576	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
594	chr1	1293171	1294230	+	0	NA	exon (NM_030649, exon 24 of 24)	exon (NM_030649, exon 24 of 24)	2470	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
39754	chr11	61868041	61868780	+	0	NA	Intergenic	AluSc|SINE|Alu	9868	NR_106804	102465446		NR_106804	ENSG00000277892	MIR6746	hsa-mir-6746	microRNA 6746	ncRNA
29913	chr10	73169351	73169700	+	0	NA	intron (NM_173348, intron 1 of 13)	AluJr|SINE|Alu	1406	NM_173348	317662		NM_173348	ENSG00000138286	FAM149B1	JBTS36|KIAA0974	family with sequence similarity 149 member B1	protein-coding
212585	chr7	128943001	128943400	+	0	NA	intron (NM_001242452, intron 2 of 7)	AluJb|SINE|Alu	1932	NM_001364314	3663		NM_032643	ENSG00000128604	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
214306	chr7	149196591	149197280	+	0	NA	intron (NM_001303481, intron 1 of 8)	intron (NM_001303481, intron 1 of 8)	1389	NM_001303481	8427		NM_003575	ENSG00000170265	ZNF282	HUB1	zinc finger protein 282	protein-coding
175825	chr4	77994471	77994630	+	0	NA	Intergenic	Intergenic	-62773	NM_025074	80144		NM_020875	ENSG00000138759	FRAS1	FRASRS1	Fraser extracellular matrix complex subunit 1	protein-coding
101422	chr17	67399951	67400980	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	23184	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
169995	chr3	179654301	179654530	+	0	NA	intron (NM_003940, intron 1 of 20)	intron (NM_003940, intron 1 of 20)	1375	NM_003940	8975		NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13	protein-coding
111705	chr19	4301571	4302450	+	0	NA	intron (NM_144615, intron 1 of 4)	L2b|LINE|L2	421	NM_144615	126259		NM_144615	ENSG00000167664	TMIGD2	CD28H|IGPR-1|IGPR1	transmembrane and immunoglobulin domain containing 2	protein-coding
237633	chrX	124085401	124085800	+	0	NA	intron (NM_001042751, intron 29 of 33)	AluSg|SINE|Alu	123894	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
46921	chr11	134271421	134271700	+	0	NA	Intergenic	L1MD2|LINE|L1	-4819	NM_001080407	112937		NM_138416	ENSG00000166105	GLB1L3	-	galactosidase beta 1 like 3	protein-coding
140433	chr2	233125371	233125730	+	0	NA	intron (NM_005541, intron 3 of 26).2	intron (NM_005541, intron 3 of 26).2	65208	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
159383	chr3	13403651	13404050	+	0	NA	intron (NM_024923, intron 1 of 39)	intron (NM_024923, intron 1 of 39)	16472	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
38639	chr11	46363171	46363880	+	0	NA	intron (NM_001105540, intron 1 of 31)	intron (NM_001105540, intron 1 of 31)	1919	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
47653	chr12	6309421	6309680	+	0	NA	promoter-TSS (NM_001384604)	promoter-TSS (NM_001384604)	-782	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
62108	chr13	95191801	95192300	+	0	NA	intron (NM_001301830, intron 8 of 19)	L2a|LINE|L2	-18294	NR_145733	109616987		NR_145733		SNORD13G	-	small nucleolar RNA, C/D box 13G	snoRNA
32237	chr10	101833601	101833800	+	0	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	6171	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
17248	chr1	156359821	156360280	+	0	NA	Intergenic	L2c|LINE|L2	-9161	NM_020407	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
171654	chr3	197657621	197657880	+	0	NA	Intergenic	Intergenic	16826	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
172728	chr4	2816671	2817380	+	0	NA	intron (NM_001145855, intron 1 of 12)	intron (NM_001145855, intron 1 of 12)	-1145	NM_001145856	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
89872	chr16	89642151	89643130	+	0	NA	Intergenic	Intergenic	15068	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
62460	chr13	99360451	99360550	+	0	NA	intron (NR_026644, intron 7 of 8)	MIR|SINE|MIR	4369	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
197857	chr6	89044001	89044200	+	0	NA	Intergenic	AluSp|SINE|Alu	-36651	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
44323	chr11	102396571	102397000	+	0	NA	3' UTR (NM_052932, exon 5 of 5)	3' UTR (NM_052932, exon 5 of 5)	49411	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
237734	chrX	128733251	128733350	+	0	NA	Intergenic	L1PA3|LINE|L1	-680897	NM_138289	139741		NM_138289	ENSG00000123165	ACTRT1	AIP1|ARIP1|ARPT1|HSD27	actin related protein T1	protein-coding
66066	chr14	58419501	58419700	+	0	NA	intron (NM_001304487, intron 1 of 3)	L1MD1|LINE|L1	7642	NM_001304490	26520		NM_012460	ENSG00000100575	TIMM9	TIM9|TIM9A	translocase of inner mitochondrial membrane 9	protein-coding
57615	chr12	122484601	122485000	+	0	NA	intron (NM_017612, intron 5 of 13)	L2-1_AMi|LINE|L2	16132	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
30670	chr10	80494751	80494850	+	0	NA	intron (NM_001128309, intron 2 of 5)	intron (NM_001128309, intron 2 of 5)	26559	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
115484	chr19	15370851	15371150	+	0	NA	intron (NM_005858, intron 7 of 13)	intron (NM_005858, intron 7 of 13)	8787	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
152893	chr22	22721951	22722330	+	0	NA	Intergenic	L1MEc|LINE|L1	75828	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
77467	chr15	84480351	84480450	+	0	NA	intron (NM_001267536, intron 9 of 10)	intron (NM_001267536, intron 9 of 10)	-22175	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
112813	chr19	7505521	7507030	+	0	NA	intron (NM_198534, intron 7 of 8)	intron (NM_198534, intron 7 of 8)	8727	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
21084	chr1	203319021	203319430	+	0	NA	Intergenic	Intergenic	13706	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
171904	chr4	824571	824950	+	0	NA	intron (NM_006651, intron 1 of 3)	intron (NM_006651, intron 1 of 3)	1369	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
210948	chr7	101309501	101309700	+	0	NA	intron (NR_110115, intron 1 of 1)	LTR13|LTR|ERVK	1293	NR_110115	101927746		NR_110115		EMSLR	BCCE4|EMS	E2F1 mRNA stabilizing lncRNA	ncRNA
42918	chr11	73391171	73392330	+	0	NA	intron (NM_152222, intron 5 of 10)	AluJr|SINE|Alu	15082	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
102205	chr17	75180721	75181300	+	0	NA	intron (NM_006937, intron 2 of 3)	intron (NM_006937, intron 2 of 3)	1949	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
53576	chr12	67665721	67666380	+	0	NA	TTS (NM_003583)	TTS (NM_003583)	17305	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
57774	chr12	122991801	122992130	+	0	NA	intron (NM_001384660, intron 15 of 25)	intron (NM_001384660, intron 15 of 25)	11905	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
44475	chr11	105033801	105034300	+	0	NA	intron (NM_033292, intron 2 of 9)	intron (NM_033292, intron 2 of 9)	1094	NM_001257119	834		NM_001223	ENSG00000137752	CASP1	ICE|IL1BC|P45	caspase 1	protein-coding
181638	chr5	49656551	49657300	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	784363	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
62495	chr13	99421271	99421430	+	0	NA	Intergenic	Intergenic	65219	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
188435	chr5	154443521	154443980	+	0	NA	intron (NR_037897, intron 1 of 2)	LTR41|LTR|ERVL	2072	NR_037897	386627		NR_037897	ENSG00000245275	SAP30L-AS1	GALNT10-AS1	SAP30L antisense RNA 1 (head to head)	ncRNA
62801	chr13	109731851	109732550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	3926	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
30521	chr10	79349701	79350200	+	0	NA	intron (NM_005729, intron 3 of 5)	intron (NM_005729, intron 3 of 5)	2481	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
80246	chr16	2207251	2207930	+	0	NA	non-coding (NR_147905, exon 6 of 9)	non-coding (NR_147905, exon 6 of 9)	2136	NM_001352059	64223		NM_022372	ENSG00000167965	MLST8	GBL|GbetaL|LST8|POP3|WAT1	MTOR associated protein, LST8 homolog	protein-coding
232086	chr9	133589571	133589950	+	0	NA	intron (NM_001080515, intron 1 of 2)	intron (NM_001080515, intron 1 of 2)	-3641	NM_001371529	642968		NM_001080515	ENSG00000196990	FAM163B	C9orf166	family with sequence similarity 163 member B	protein-coding
223488	chr8	144059671	144059850	+	0	NA	exon (NM_017570, exon 3 of 27)	exon (NM_017570, exon 3 of 27)	932	NM_017570	26873		NM_017570	ENSG00000178814	OPLAH	5-Opase|OPLA|OPLAHD	5-oxoprolinase, ATP-hydrolysing	protein-coding
22372	chr1	218164171	218165000	+	0	NA	Intergenic	CpG	-120708	NM_016052	51018		NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
79452	chr16	719071	719230	+	0	NA	3' UTR (NM_024042, exon 4 of 4)	3' UTR (NM_024042, exon 4 of 4)	-1996	NM_001271285	65990		NM_023933	ENSG00000103254	ANTKMT	ANT-KMT|C16orf24|FAM173A	adenine nucleotide translocase lysine methyltransferase	protein-coding
85800	chr16	56962971	56963550	+	0	NA	intron (NM_000078, intron 2 of 15)	intron (NM_000078, intron 2 of 15)	1310	NM_000078	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
129870	chr2	73075471	73076230	+	0	NA	intron (NM_001371272, intron 5 of 5)	intron (NM_001371272, intron 5 of 5)	-4138	NM_001371740	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
78861	chr15	100343101	100343550	+	0	NA	Intergenic	Intergenic	-1350	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
159089	chr3	12384471	12384630	+	0	NA	intron (NM_001374261, intron 4 of 6)	intron (NM_001374261, intron 4 of 6)	33133	NM_001354668	5468		NM_005037	ENSG00000132170	PPARG	CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARG5|PPARgamma	peroxisome proliferator activated receptor gamma	protein-coding
129345	chr2	68756021	68756450	+	0	NA	intron (NM_001364821, intron 1 of 10)	L1MB3|LINE|L1	-18675	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
22901	chr1	225874171	225874330	+	0	NA	intron (NM_014698, intron 4 of 24)	(AC)n|Simple_repeat|Simple_repeat	8130	NM_014698	9725		NM_014698	ENSG00000196187	TMEM63A	HLD19|KIAA0792	transmembrane protein 63A	protein-coding
37585	chr11	19282901	19283100	+	0	NA	Intergenic	AluSx|SINE|Alu	-41345	NM_001256372	79733		NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
194910	chr6	34758951	34759150	+	0	NA	intron (NM_003093, intron 2 of 5)	Charlie1a|DNA|hAT-Charlie	1545	NM_003093	6631		NM_003093	ENSG00000124562	SNRPC	U1C|Yhc1	small nuclear ribonucleoprotein polypeptide C	protein-coding
198050	chr6	90194321	90194580	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	102393	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
223615	chr8	144317571	144317730	+	0	NA	promoter-TSS (NR_106907)	promoter-TSS (NR_106907)	-335	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
85461	chr16	50671621	50672150	+	0	NA	TTS (NR_110908)	TTS (NR_110908)	3030	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
81469	chr16	8902921	8903380	+	0	NA	intron (NR_135826, intron 16 of 30)	intron (NR_135826, intron 16 of 30)	33489	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
186380	chr5	134964351	134965280	+	0	NA	Intergenic	Intergenic	-3092	NM_178019	347732		NM_178019	ENSG00000152705	CATSPER3	CACRC	cation channel sperm associated 3	protein-coding
51029	chr12	49749821	49751080	+	0	NA	intron (NM_001098576, intron 1 of 9)	intron (NM_001098576, intron 1 of 9)	8641	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
55021	chr12	96380671	96380900	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	19654	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
78400	chr15	91954321	91954780	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	100246	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
137710	chr2	197507451	197507750	+	0	NA	intron (NM_001202485, intron 2 of 8)	AluJo|SINE|Alu	7221	NM_001202485	100529241		NM_001202485	ENSG00000270757	HSPE1-MOB4	HSPE1-PHOCN	HSPE1-MOB4 readthrough	protein-coding
230207	chr9	127818351	127818680	+	0	NA	intron (NR_136302, intron 3 of 5)	intron (NR_136302, intron 3 of 5)	2449	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
100209	chr17	59158071	59158230	+	0	NA	intron (NM_018304, intron 1 of 9)	L2c|LINE|L2	2404	NM_018304	55771		NM_018304	ENSG00000068489	PRR11	-	proline rich 11	protein-coding
78168	chr15	90480821	90481500	+	0	NA	intron (NM_003870, intron 26 of 37)	MLT1D|LTR|ERVL-MaLR	-48763	NM_001042574	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
6272	chr1	27592771	27592930	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	10644	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
79234	chr16	379851	380430	+	0	NA	intron (NM_021259, intron 1 of 12)	intron (NM_021259, intron 1 of 12)	1838	NM_021259	58986		NM_021259	ENSG00000129925	PGAP6	GPI-PLA2|M83|TMEM6|TMEM8|TMEM8A	post-GPI attachment to proteins 6	protein-coding
183456	chr5	79233071	79233430	+	0	NA	Intergenic	AluJr|SINE|Alu	-2881	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
218101	chr8	38996071	38997430	+	0	NA	promoter-TSS (NM_001024381)	promoter-TSS (NM_001024381)	-223	NM_003816	8754		NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
210660	chr7	100489751	100490450	+	0	NA	intron (NM_173564, intron 4 of 6)	intron (NM_173564, intron 4 of 6)	6173	NM_173564	222950		NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
67750	chr14	73711751	73713070	+	0	NA	3' UTR (NM_006029, exon 1 of 1)	3' UTR (NM_006029, exon 1 of 1)	1974	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
92376	chr17	8225351	8225450	+	0	NA	non-coding (NR_046431, exon 22 of 22)	non-coding (NR_046431, exon 22 of 22)	-1357	NR_026951	284029		NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324|RNA00324|TP53LC03	long intergenic non-protein coding RNA 324	ncRNA
228154	chr9	96931601	96932200	+	0	NA	exon (NM_001170741, exon 2 of 7)	exon (NM_001170741, exon 2 of 7)	3057	NM_001045477	441457		NM_001024597	ENSG00000188152	NUTM2G	FAM22G|NUTMG	NUT family member 2G	protein-coding
130331	chr2	84989451	84989830	+	0	NA	intron (NM_020122, intron 1 of 6)	L2b|LINE|L2	18479	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
84121	chr16	29673821	29674480	+	0	NA	Intergenic	Intergenic	-4858	NM_001318249	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
69813	chr14	99210771	99211830	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	60897	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
207680	chr7	45135851	45136600	+	0	NA	Intergenic	Intergenic	-21566	NM_005856	10268		NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
176258	chr4	86982771	86982930	+	0	NA	intron (NM_001166693, intron 2 of 20)	AluSx1|SINE|Alu	-24138	NM_001313959	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
161057	chr3	38027371	38027900	+	0	NA	intron (NM_006225, intron 1 of 14)	intron (NM_006225, intron 1 of 14)	2007	NM_006225	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
110166	chr19	1651001	1652100	+	0	NA	intron (NM_003200, intron 1 of 18)	intron (NM_003200, intron 1 of 18)	1065	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
13535	chr1	115066051	115066150	+	0	NA	intron (NM_001308315, intron 2 of 6)	L1MA4|LINE|L1	23400	NM_001308315	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
107186	chr18	35589021	35589300	+	0	NA	intron (NM_001384444, intron 1 of 11)	L1MD1|LINE|L1	-2577	NR_039771	100616257		NR_039771	ENSG00000283514	MIR3975	-	microRNA 3975	ncRNA
170427	chr3	185660201	185660730	+	0	NA	intron (NM_001291874, intron 8 of 13)	intron (NM_001291874, intron 8 of 13)	-52787	NR_126326	646600		NR_027317	ENSG00000163915	IGF2BP2-AS1	C3orf65	IGF2BP2 antisense RNA 1	ncRNA
167441	chr3	129069371	129070080	+	0	NA	Intergenic	LTR12|LTR|ERV1	8946	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
227028	chr9	83958001	83958600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1314	NM_001317997	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
65642	chr14	52317871	52318630	+	0	NA	intron (NM_000956, intron 1 of 1)	intron (NM_000956, intron 1 of 1)	3938	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
144096	chr20	33791671	33792480	+	0	NA	non-coding (NR_104259, exon 14 of 14)	non-coding (NR_104259, exon 14 of 14)	19024	NR_110623	101929746		NR_110623	ENSG00000230753	ZNF341-AS1	-	ZNF341 antisense RNA 1	ncRNA
219293	chr8	69663851	69663950	+	0	NA	Intergenic	Intergenic	71000	NR_132437	23213		NM_015170	ENSG00000137573	SULF1	SULF-1	sulfatase 1	protein-coding
97380	chr17	43333721	43334830	+	0	NA	Intergenic	LTR13|LTR|ERVK	-34044	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
162512	chr3	48585851	48585950	+	0	NA	intron (NM_000094, intron 29 of 118)	intron (NM_000094, intron 29 of 118)	-6923	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
130004	chr2	74149421	74149750	+	0	NA	TTS (NR_045637)	TTS (NR_045637)	1604	NR_045636	100507171		NR_045634	ENSG00000225439	BOLA3-DT	BOLA3-AS1	BOLA3 divergent transcript	ncRNA
210589	chr7	100371371	100371750	+	0	NA	Intergenic	Intergenic	-1927	NM_178273	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
106818	chr18	23994071	23995780	+	0	NA	intron (NR_110796, intron 5 of 5)	(AAT)n|Simple_repeat|Simple_repeat	2038	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
143558	chr20	31609251	31609350	+	0	NA	Intergenic	MIRb|SINE|MIR	2114	NR_036161	100422904		NR_036161	ENSG00000264395	MIR3193	-	microRNA 3193	ncRNA
156064	chr22	39995951	39996450	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	1246	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
137567	chr2	197252301	197252700	+	0	NA	intron (NR_046837, intron 5 of 5)	AluY|SINE|Alu	50019	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
175547	chr4	75401321	75401580	+	0	NA	Intergenic	L1PA2|LINE|L1	47374	NR_033964	441025		NR_033964	ENSG00000251383	LINC02483	-	long intergenic non-protein coding RNA 2483	ncRNA
10691	chr1	74586301	74586580	+	0	NA	intron (NR_121671, intron 1 of 2)	intron (NR_121671, intron 1 of 2)	-3295	NR_121670	101927320		NR_121670	ENSG00000234497	ERICH3-AS1	-	ERICH3 antisense RNA 1	ncRNA
12059	chr1	98404571	98404730	+	0	NA	Intergenic	Intergenic	193939	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
207569	chr7	44914971	44915800	+	0	NA	Intergenic	Intergenic	-29855	NM_033224	5814		NM_033224	ENSG00000146676	PURB	PURBETA	purine rich element binding protein B	protein-coding
164987	chr3	71317671	71318030	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-13079	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
116452	chr19	18057721	18059350	+	0	NA	TTS (NM_001290024)	TTS (NM_001290024)	28399	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
84828	chr16	31105371	31106680	+	0	NA	Intergenic	CpG	-2361	NM_005881	10295		NM_005881	ENSG00000103507	BCKDK	BCKDKD|BDK	branched chain keto acid dehydrogenase kinase	protein-coding
233878	chrX	1564901	1565700	+	0	NA	Intergenic	Intergenic	-26304	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
204516	chr7	4794051	4794800	+	0	NA	TTS (NM_001364858)	TTS (NM_001364858)	-5786	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
186234	chr5	134399701	134400100	+	0	NA	Intergenic	AluSc|SINE|Alu	11981	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
23397	chr1	228212071	228212230	+	0	NA	exon (NM_001098623, exon 2 of 105)	exon (NM_001098623, exon 2 of 105)	1505	NR_073155	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
47334	chr12	1806471	1806980	+	0	NA	intron (NM_172364, intron 29 of 37)	MER5A|DNA|hAT-Charlie	-13542	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
72757	chr15	39627701	39628350	+	0	NA	intron (NM_001324338, intron 10 of 11)	intron (NM_001324338, intron 10 of 11)	46946	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
153627	chr22	28680871	28681350	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-1245	NM_001145418	23331		NM_015281	ENSG00000100154	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
205390	chr7	16071301	16071550	+	0	NA	Intergenic	Intergenic	-139061	NR_038946	100506025		NR_038946	ENSG00000229688	CRPPA-AS1	ISPD-AS1	CRPPA antisense RNA 1	ncRNA
149209	chr21	25396151	25396600	+	0	NA	intron (NR_024027, intron 4 of 4)	intron (NR_024027, intron 4 of 4)	35326	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
139480	chr2	224400951	224401250	+	0	NA	exon (NM_024785, exon 1 of 3)	exon (NM_024785, exon 1 of 3)	894	NM_024785	79843		NM_024785	ENSG00000124019	FAM124B	-	family with sequence similarity 124 member B	protein-coding
204831	chr7	5701161	5702000	+	0	NA	intron (NM_207111, intron 13 of 16)	MIRb|SINE|MIR	10330	NR_106934	102466203		NR_106934	ENSG00000283419	MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
62286	chr13	98918821	98919100	+	0	NA	intron (NM_001318849, intron 7 of 54)	intron (NM_001318849, intron 7 of 54)	59104	NM_001366683	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
167712	chr3	130905301	130905850	+	0	NA	intron (NM_001001487, intron 2 of 28)	L1MC4a|LINE|L1	11025	NM_014382	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
101600	chr17	68105171	68105400	+	0	NA	intron (NR_027418, intron 2 of 5)	AluY|SINE|Alu	3730	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
59965	chr13	31920251	31920550	+	0	NA	intron (NR_027062, intron 1 of 3)	intron (NR_027062, intron 1 of 3)	73617	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
9101	chr1	45230571	45230850	+	0	NA	Intergenic	Intergenic	-24105	NM_020883	57643		NM_020883	ENSG00000162415	ZSWIM5	-	zinc finger SWIM-type containing 5	protein-coding
201106	chr6	142853501	142853700	+	0	NA	intron (NM_006734, intron 1 of 9)	Tigger16b|DNA|TcMar-Tigger	91576	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
214581	chr7	150624551	150624850	+	0	NA	TTS (NM_001244072)	TTS (NM_001244072)	7685	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
199775	chr6	125960451	125960750	+	0	NA	intron (NM_138571, intron 1 of 4)	AluSg|SINE|Alu	3830	NM_138571	135114		NM_138571	ENSG00000111911	HINT3	HINT4	histidine triad nucleotide binding protein 3	protein-coding
104080	chr17	80248621	80249200	+	0	NA	intron (NM_001166348, intron 14 of 16)	intron (NM_001166348, intron 14 of 16)	-11942	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
7969	chr1	37795201	37795930	+	0	NA	promoter-TSS (NM_152496)	promoter-TSS (NM_152496)	77	NM_152496	149175		NM_152496	ENSG00000185090	MANEAL	-	mannosidase endo-alpha like	protein-coding
200839	chr6	138115471	138116300	+	0	NA	Intergenic	Intergenic	-8466	NM_022121	64065		NM_022121	ENSG00000112378	PERP	EKVP7|KCP1|KRTCAP1|OLMS2|PIGPC1|THW|dJ496H19.1	p53 apoptosis effector related to PMP22	protein-coding
70630	chr14	102820701	102820900	+	0	NA	intron (NM_001199427, intron 1 of 7)	AluJr|SINE|Alu	43321	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
118063	chr19	34308821	34309650	+	0	NA	intron (NM_014686, intron 2 of 13)	L1MC5a|LINE|L1	54681	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
8513	chr1	40976171	40976530	+	0	NA	Intergenic	Intergenic	-3346	NR_125440	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
130837	chr2	87132501	87132900	+	0	NA	Intergenic	L1MD1|LINE|L1	-56287	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
147190	chr20	56761471	56761630	+	0	NA	Intergenic	(ATGATG)n|Simple_repeat|Simple_repeat	132244	NM_003222	7022		NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma	protein-coding
73561	chr15	44299051	44299150	+	0	NA	intron (NM_177974, intron 1 of 8)	MLT1C|LTR|ERVL-MaLR	10381	NM_177974	113201		NM_138423	ENSG00000166734	GOLM2	CASC4|H63	golgi membrane protein 2	protein-coding
23199	chr1	227317951	227318980	+	0	NA	promoter-TSS (NM_001366010)	promoter-TSS (NM_001366010)	27	NM_001366011	8476		NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|MRCKalpha|PK428	CDC42 binding protein kinase alpha	protein-coding
67270	chr14	69152401	69154200	+	0	NA	promoter-TSS (NM_003861)	promoter-TSS (NM_003861)	-103	NM_001284206	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
124628	chr2	1545951	1546250	+	0	NA	Intergenic	Intergenic	-5830	NR_168373	102723730		NR_168373		LOC102723730	-	uncharacterized LOC102723730	ncRNA
55856	chr12	109210051	109210250	+	0	NA	intron (NM_001093, intron 21 of 52)	(TA)n|Simple_repeat|Simple_repeat	93563	NM_001093	32		NM_001093	ENSG00000076555	ACACB	ACACbeta|ACC-beta|ACC2|ACCB|ACCbeta|HACC275	acetyl-CoA carboxylase beta	protein-coding
231898	chr9	133062521	133063380	+	0	NA	intron (NM_001807, intron 1 of 10)	intron (NM_001807, intron 1 of 10)	969	NM_001807	1056		NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
59990	chr13	32391301	32391500	+	0	NA	intron (NM_000059, intron 24 of 26)	LTR16|LTR|ERVL	36730	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
101950	chr17	74559171	74559330	+	0	NA	Intergenic	MER74B|LTR|ERVL	8093	NM_001324073	100130520		NM_001324073	ENSG00000284690	CD300H	CD300Hs	CD300H molecule (gene/pseudogene)	protein-coding
117111	chr19	19201771	19202130	+	0	NA	TTS (NM_001278728)	TTS (NM_001278728)	1464	NM_176880	126382		NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
157191	chr22	43103001	43103200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7650	NM_001197	638		NM_001197	ENSG00000100290	BIK	BIP1|BP4|NBK	BCL2 interacting killer	protein-coding
72277	chr15	30827621	30827880	+	0	NA	TTS (NR_072991)	TTS (NR_072991)	9714	NR_072991	390561		NR_072991		HERC2P10	-	HERC2 pseudogene 10	pseudo
204337	chr7	2801401	2801600	+	0	NA	intron (NM_007353, intron 1 of 3)	intron (NM_007353, intron 1 of 3)	13730	NM_001282441	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
134339	chr2	136115991	136116700	+	0	NA	promoter-TSS (NM_001008540)	promoter-TSS (NM_001008540)	-110	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
44093	chr11	95720101	95720500	+	0	NA	Intergenic	Intergenic	69482	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
62073	chr13	94330401	94331200	+	0	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	-142809	NR_046535	100873972		NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
184195	chr5	95858571	95859280	+	0	NA	non-coding (NR_026936, exon 3 of 3)	non-coding (NR_026936, exon 3 of 3)	6693	NR_026936	202299		NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
213248	chr7	134316171	134317380	+	0	NA	5' UTR (NM_032826, exon 1 of 10)	5' UTR (NM_032826, exon 1 of 10)	155	NM_032826	84912		NM_032826	ENSG00000205060	SLC35B4	YEA|YEA4	solute carrier family 35 member B4	protein-coding
78679	chr15	95803171	95803330	+	0	NA	Intergenic	Intergenic	324591	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
132767	chr2	109802471	109802630	+	0	NA	intron (NM_032260, intron 3 of 19)	AluJo|SINE|Alu	7941	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
202769	chr6	159056921	159057830	+	0	NA	Intergenic	Intergenic	-12223	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
5093	chr1	24746871	24747380	+	0	NA	intron (NM_013943, intron 1 of 5)	intron (NM_013943, intron 1 of 5)	1678	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
198444	chr6	106110121	106110950	+	0	NA	TTS (NM_001198)	TTS (NM_001198)	11594	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
169482	chr3	169669071	169669400	+	0	NA	Intergenic	CpG	-5523	NM_001366473	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
18835	chr1	167681771	167682350	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	-39922	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
73292	chr15	41870471	41871480	+	0	NA	intron (NM_016642, intron 29 of 67)	intron (NM_016642, intron 29 of 67)	-4424	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
19608	chr1	179877401	179878300	+	0	NA	promoter-TSS (NM_022347)	promoter-TSS (NM_022347)	-47	NM_145034	163590		NM_022347	ENSG00000169905	TOR1AIP2	IFRG15|LULL1|NET9	torsin 1A interacting protein 2	protein-coding
27663	chr10	33046651	33047300	+	0	NA	Intergenic	Intergenic	69832	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
238700	chrX	154084051	154084350	+	0	NA	intron (NM_001316337, intron 2 of 4)	AluSx1|SINE|Alu	12769	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
104201	chr17	80472871	80473950	+	0	NA	exon (NM_002522, exon 3 of 5)	exon (NM_002522, exon 3 of 5)	3197	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
175792	chr4	77803551	77804050	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluSp|SINE|Alu	15264	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
146706	chr20	50569471	50569630	+	0	NA	intron (NM_002827, intron 4 of 9)	intron (NM_002827, intron 4 of 9)	-16236	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
187893	chr5	148828501	148829150	+	0	NA	TTS (NM_000024)	TTS (NM_000024)	2214	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
130496	chr2	85586571	85587130	+	0	NA	intron (NM_006634, intron 1 of 2)	AluY|SINE|Alu	2419	NM_006634	10791		NM_006634	ENSG00000168899	VAMP5	-	vesicle associated membrane protein 5	protein-coding
40822	chr11	64934901	64935100	+	0	NA	TTS (NM_006244)	TTS (NM_006244)	893	NM_130769	170589		NM_130769	ENSG00000149735	GPHA2	A2|GPA2|ZSIG51	glycoprotein hormone subunit alpha 2	protein-coding
132510	chr2	106089421	106089880	+	0	NA	Intergenic	L1MDa|LINE|L1	23962	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
14205	chr1	143184851	143185580	+	0	NA	Intergenic	Intergenic	237377	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
197678	chr6	85592851	85593600	+	0	NA	intron (NM_001350532, intron 1 of 29)	intron (NM_001350532, intron 1 of 29)	633	NM_153816	57231		NM_020468	ENSG00000135317	SNX14	RGS-PX2|SCAR20	sorting nexin 14	protein-coding
144404	chr20	35275401	35276080	+	0	NA	TTS (NM_001355003)	TTS (NM_001355003)	2382	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
40993	chr11	65398501	65398900	+	0	NA	intron (NM_001300832, intron 6 of 9)	intron (NM_001300832, intron 6 of 9)	12063	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
13114	chr1	111630671	111631030	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-10452	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
225229	chr9	34192301	34192500	+	0	NA	intron (NM_001171201, intron 1 of 5)	AluSg|SINE|Alu	13357	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
5403	chr1	25506651	25507300	+	0	NA	Intergenic	L1PA2|LINE|L1	-36631	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
211269	chr7	102689401	102690700	+	0	NA	non-coding (NR_146066, exon 5 of 12)	non-coding (NR_146066, exon 5 of 12)	-18315	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
177528	chr4	118632871	118633680	+	0	NA	non-coding (NR_109983, exon 10 of 10)	non-coding (NR_109983, exon 10 of 10)	3346	NR_103825	729218		NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
129521	chr2	69683401	69684450	+	0	NA	intron (NM_001320698, intron 2 of 14)	intron (NM_001320698, intron 2 of 14)	40117	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
96363	chr17	40091721	40092530	+	0	NA	TTS (NM_021724)	TTS (NM_021724)	8464	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
144172	chr20	34085171	34085330	+	0	NA	TTS (NM_007367)	TTS (NM_007367)	26993	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
69449	chr14	94342451	94342550	+	0	NA	Intergenic	Intergenic	-19164	NM_001756	866		NM_001756	ENSG00000170099	SERPINA6	CBG	serpin family A member 6	protein-coding
197351	chr6	73450381	73451800	+	0	NA	intron (NM_138441, intron 1 of 4)	intron (NM_138441, intron 1 of 4)	1207	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
90061	chr16	89948141	89949950	+	0	NA	promoter-TSS (NM_001242819)	promoter-TSS (NM_001242819)	290	NM_001242817	54849		NM_017702	ENSG00000140995	DEF8	-	differentially expressed in FDCP 8 homolog	protein-coding
57432	chr12	121890371	121890530	+	0	NA	intron (NM_001261400, intron 1 of 3)	MER113|DNA|hAT-Charlie	1660	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
219688	chr8	80612621	80612980	+	0	NA	Intergenic	Intergenic	126574	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
156408	chr22	41186951	41187650	+	0	NA	intron (NR_110514, intron 2 of 2)	L1M4|LINE|L1	10201	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
84730	chr16	30927721	30928750	+	0	NA	intron (NM_001382781, intron 5 of 10)	intron (NM_001382781, intron 5 of 10)	3660	NM_001099784	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
23027	chr1	226407101	226409180	+	0	NA	promoter-TSS (NM_001618)	promoter-TSS (NM_001618)	-47	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
203002	chr6	163356571	163356730	+	0	NA	Intergenic	Intergenic	-9617	NR_033862	401282		NR_033862	ENSG00000285564	DKFZp451B082	-	uncharacterized LOC401282	ncRNA
57254	chr12	121576801	121577280	+	0	NA	intron (NM_001005366, intron 2 of 22)	intron (NM_001005366, intron 2 of 22)	3206	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
205738	chr7	23496801	23497930	+	0	NA	Intergenic	Intergenic	6977	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
95536	chr17	36599821	36600100	+	0	NA	intron (NM_024308, intron 5 of 6)	intron (NM_024308, intron 5 of 6)	-1623	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
130468	chr2	85545551	85545650	+	0	NA	TTS (NM_005911)	TTS (NM_005911)	6432	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
27009	chr10	26827051	26827150	+	0	NA	intron (NR_145410, intron 1 of 11)	AluSx3|SINE|Alu	33858	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
225047	chr9	33163921	33165090	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-2443	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
16623	chr1	155085901	155087150	+	0	NA	exon (NM_004952, exon 5 of 5)	exon (NM_004952, exon 5 of 5)	7688	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
145216	chr20	38909351	38910050	+	0	NA	intron (NM_001172735, intron 9 of 9)	MamTip3|DNA|hAT-Tip100	-16717	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
193833	chr6	31496171	31496530	+	0	NA	intron (NM_001289160, intron 1 of 5).6	L1MB7|LINE|L1	1469	NM_001289160	4277		NM_005931	ENSG00000204516	MICB	PERB11.2	MHC class I polypeptide-related sequence B	protein-coding
82012	chr16	11920251	11920550	+	0	NA	Intergenic	MER21C|LTR|ERVL	-3746	NM_001130007	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
219415	chr8	70670451	70670980	+	0	NA	intron (NM_001287259, intron 1 of 5)	intron (NM_001287259, intron 1 of 5)	1376	NM_001287258	389668		NM_001011720	ENSG00000221947	XKR9	XRG9|hXKR9	XK related 9	protein-coding
31916	chr10	100507171	100507530	+	0	NA	intron (NM_015490, intron 7 of 25)	intron (NM_015490, intron 7 of 25)	12511	NM_015490	25956		NM_015490	ENSG00000075826	SEC31B	SEC31B-1|SEC31L2	SEC31 homolog B, COPII coat complex component	protein-coding
232534	chr9	136335801	136336600	+	0	NA	intron (NM_015597, intron 3 of 8)	intron (NM_015597, intron 3 of 8)	8661	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
39274	chr11	57881551	57881850	+	0	NA	Intergenic	Intergenic	119898	NM_001331	1500		NM_001331	ENSG00000198561	CTNND1	BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
17951	chr1	160400201	160401550	+	0	NA	intron (NM_020335, intron 1 of 7)	CpG	311	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
118369	chr19	35712671	35713980	+	0	NA	intron (NM_001316903, intron 2 of 5)	intron (NM_001316903, intron 2 of 5)	-4678	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
233657	chrX	1011371	1011730	+	0	NA	Intergenic	AluSx1|SINE|Alu	201099	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
125244	chr2	10401671	10401830	+	0	NA	intron (NM_001258358, intron 2 of 4)	intron (NM_001258358, intron 2 of 4)	32986	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
75659	chr15	67724821	67725080	+	0	NA	intron (NM_002757, intron 16 of 20)	intron (NM_002757, intron 16 of 20)	-100559	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
71651	chr14	106810271	106810500	+	0	NA	Intergenic	Intergenic	40614	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
103659	chr17	78777071	78777500	+	0	NA	intron (NM_017456, intron 1 of 12)	AluY|SINE|Alu	4923	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
231866	chr9	132946101	132946300	+	0	NA	TTS (NR_049862)	TTS (NR_049862)	493	NR_049862	100846992		NR_049862	ENSG00000263816	MIR548AW	-	microRNA 548aw	ncRNA
36593	chr11	6722171	6722400	+	0	NA	promoter-TSS (NR_003945)	promoter-TSS (NR_003945)	-406	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
196245	chr6	42890001	42891800	+	0	NA	promoter-TSS (NM_001008739)	promoter-TSS (NM_001008739)	-79	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
94961	chr17	32136621	32137180	+	0	NA	Intergenic	Intergenic	-5554	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
202835	chr6	159733301	159733830	+	0	NA	intron (NM_001322817, intron 2 of 7)	AluJb|SINE|Alu	6059	NM_001270533	9589		NM_004906	ENSG00000146457	WTAP	Mum2	WT1 associated protein	protein-coding
190302	chr5	179599571	179599880	+	0	NA	intron (NR_110560, intron 4 of 8).2	intron (NR_110560, intron 4 of 8).2	4016	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
99904	chr17	56908271	56908730	+	0	NA	exon (NM_005082, exon 2 of 9)	exon (NM_005082, exon 2 of 9)	5549	NM_005082	7706		NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
127936	chr2	46505951	46506450	+	0	NA	Intergenic	Intergenic	26635	NM_001145051	388946		NM_001145051	ENSG00000284701	TMEM247	-	transmembrane protein 247	protein-coding
76245	chr15	73990601	73990800	+	0	NA	intron (NM_001256676, intron 1 of 6)	intron (NM_001256676, intron 1 of 6)	1595	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
51399	chr12	51972401	51973330	+	0	NA	intron (NM_020327, intron 1 of 8)	intron (NM_020327, intron 1 of 8)	19485	NM_020327	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
55391	chr12	104456371	104457500	+	0	NA	promoter-TSS (NM_001173982)	promoter-TSS (NM_001173982)	-13	NM_018413	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
189187	chr5	171416971	171417680	+	0	NA	Intergenic	Intergenic	-2322	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
30409	chr10	78944801	78945200	+	0	NA	intron (NR_024429, intron 7 of 7)	MIR3|SINE|MIR	122448	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
25532	chr10	7382471	7382830	+	0	NA	intron (NM_001029880, intron 1 of 20)	intron (NM_001029880, intron 1 of 20)	26691	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
103909	chr17	79815301	79816450	+	0	NA	Intergenic	CpG	-7577	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
134033	chr2	131091551	131091650	+	0	NA	intron (NM_001321743, intron 2 of 8)	AluSx|SINE|Alu	1562	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
233907	chrX	1609351	1609850	+	0	NA	intron (NM_004043, intron 1 of 9)	intron (NM_004043, intron 1 of 9)	-5459	NM_001171038	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
58876	chr13	18224421	18224680	+	0	NA	intron (NR_027278, intron 4 of 7)	intron (NR_027278, intron 4 of 7)	29253	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
28125	chr10	43416601	43417500	+	0	NA	TTS (NR_145740)	TTS (NR_145740)	390	NR_145740	109616985		NR_145740	ENSG00000221400	SNORD3J	-	small nucleolar RNA, C/D box 3J	snoRNA
135435	chr2	161170721	161171180	+	0	NA	intron (NM_001199135, intron 1 of 7)	intron (NM_001199135, intron 1 of 7)	10522	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
200765	chr6	137826401	137827230	+	0	NA	intron (NR_049793, intron 3 of 3)	(ATATGT)n|Simple_repeat|Simple_repeat	-40444	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
116920	chr19	18795521	18796200	+	0	NA	Intergenic	Intergenic	-4555	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
217785	chr8	33497921	33498280	+	0	NA	TTS (NM_001102401)	TTS (NM_001102401)	12918	NM_032509	84549		NM_032509	ENSG00000198042	MAK16	MAK16L|RBM13	MAK16 homolog	protein-coding
34718	chr10	133568671	133568830	+	0	NA	promoter-TSS (NM_130784)	promoter-TSS (NM_130784)	-475	NM_130784	93426		NM_130784	ENSG00000171772	SYCE1	C10orf94|CT76|POF12|SPGF15	synaptonemal complex central element protein 1	protein-coding
212537	chr7	128848821	128849080	+	0	NA	exon (NM_001127487, exon 28 of 47)	exon (NM_001127487, exon 28 of 47)	13676	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
31846	chr10	99731701	99732940	+	0	NA	promoter-TSS (NM_001372025)	promoter-TSS (NM_001372025)	86	NM_015960	51076		NM_015960	ENSG00000119929	CUTC	CGI-32	cutC copper transporter	protein-coding
34871	chr11	357421	357700	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11939	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
25957	chr10	11604871	11605250	+	0	NA	intron (NM_014688, intron 1 of 14)	intron (NM_014688, intron 1 of 14)	-6241	NR_160647	107984208		NR_160647	ENSG00000271360	USP6NL-AS1	-	USP6NL antisense RNA 1	ncRNA
218115	chr8	41508401	41508780	+	0	NA	intron (NR_156425, intron 5 of 5)	intron (NR_156425, intron 5 of 5)	17978	NR_156425	51125		NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
68877	chr14	91322051	91322550	+	0	NA	intron (NM_001080414, intron 12 of 29)	intron (NM_001080414, intron 12 of 29)	-68420	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
170969	chr3	194494571	194494930	+	0	NA	Intergenic	AluSx1|SINE|Alu	7610	NR_033929	401106		NR_033929		ATP13A3-DT	LINC00884	ATP13A3 divergent transcript	ncRNA
209891	chr7	91938971	91939330	+	0	NA	Intergenic	Intergenic	-1712	NM_147185	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
221312	chr8	123034101	123034500	+	0	NA	intron (NM_024295, intron 1 of 7)	intron (NM_024295, intron 1 of 7)	8002	NM_024295	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
57535	chr12	122147471	122148250	+	0	NA	TTS (NM_014938)	TTS (NM_014938)	-19859	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
181591	chr5	43395701	43396280	+	0	NA	intron (NM_148672, intron 1 of 2)	AluY|SINE|Alu	1147	NM_001301875	56477		NM_019846	ENSG00000151882	CCL28	CCK1|MEC|SCYA28	C-C motif chemokine ligand 28	protein-coding
191255	chr6	5996351	5997100	+	0	NA	Intergenic	Intergenic	7319	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
223865	chr9	140171	140330	+	0	NA	intron (NM_001145356, intron 9 of 13)	L1PA3|LINE|L1	-21833	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
85486	chr16	50721821	50723230	+	0	NA	intron (NR_163434, intron 8 of 12)	intron (NR_163434, intron 8 of 12)	-19561	NM_001378744	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
48587	chr12	10309871	10310230	+	0	NA	intron (NR_147040, intron 3 of 4)	intron (NR_147040, intron 3 of 4)	2180	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
202381	chr6	157823701	157824780	+	0	NA	intron (NM_016224, intron 1 of 17)	intron (NM_016224, intron 1 of 17)	994	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
38519	chr11	45892601	45893200	+	0	NA	intron (NM_005456, intron 1 of 11)	L2c|LINE|L2	7249	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
233582	chrX	309501	309700	+	0	NA	intron (NM_012227, intron 7 of 9)	MLT1C|LTR|ERVL-MaLR	9219	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
228382	chr9	99116521	99116980	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	11637	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
149036	chr21	14737701	14738200	+	0	NA	Intergenic	L1ME3E|LINE|L1	-94843	NM_001256579	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
78886	chr15	100872871	100873270	+	0	NA	intron (NR_160709, intron 2 of 3)	Tigger16a|DNA|TcMar-Tigger	-6761	NM_000693	220		NM_000693	ENSG00000184254	ALDH1A3	ALDH1A6|ALDH6|MCOP8|RALDH3	aldehyde dehydrogenase 1 family member A3	protein-coding
3934	chr1	17502351	17502630	+	0	NA	Intergenic	Intergenic	-37208	NR_137287	55160		NM_018125	ENSG00000074964	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor 10 like	protein-coding
203228	chr6	168841751	168841850	+	0	NA	Intergenic	(GGATG)n|Simple_repeat|Simple_repeat	122582	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
211185	chr7	102598171	102598550	+	0	NA	intron (NM_001079877, intron 8 of 19)	AluSz6|SINE|Alu	18396	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
34178	chr10	128122851	128123180	+	0	NA	intron (NM_001145966, intron 3 of 13)	intron (NM_001145966, intron 3 of 13)	3408	NM_002417	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
195412	chr6	36851051	36851480	+	0	NA	Intergenic	Intergenic	-11267	NM_001376889	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
214233	chr7	148865071	148865230	+	0	NA	intron (NM_001203248, intron 1 of 19)	intron (NM_001203248, intron 1 of 19)	18335	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
28624	chr10	58383851	58384600	+	0	NA	promoter-TSS (NM_001270782)	promoter-TSS (NM_001270782)	-918	NR_073073	7019		NM_003201	ENSG00000108064	TFAM	MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	transcription factor A, mitochondrial	protein-coding
213753	chr7	140475801	140476380	+	0	NA	intron (NM_001291663, intron 1 of 6)	intron (NM_001291663, intron 1 of 6)	3415	NM_013446	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
173137	chr4	6644001	6644400	+	0	NA	Intergenic	AluJo|SINE|Alu	4109	NM_001272053	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
98931	chr17	48623321	48624000	+	0	NA	intron (NM_024017, intron 1 of 1)	intron (NM_024017, intron 1 of 1)	2698	NM_024017	3219		NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
6030	chr1	27110571	27110730	+	0	NA	intron (NR_046474, intron 1 of 10)	MIRc|SINE|MIR	44475	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
213904	chr7	142485521	142485980	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	11223	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
223951	chr9	1042351	1042850	+	0	NA	Intergenic	CpG	-5543	NR_110643	102800446		NR_110643		LINC01230	TCONS_00015639|linc-DMRT2|lnc-DRMT2	long intergenic non-protein coding RNA 1230	ncRNA
88795	chr16	87379451	87379750	+	0	NA	intron (NM_001282683, intron 2 of 9)	LTR22A|LTR|ERVK	4176	NM_024735	79791		NM_024735	ENSG00000103264	FBXO31	FBX14|FBXO14|Fbx31|MRT45|pp2386	F-box protein 31	protein-coding
106668	chr18	23133901	23134500	+	0	NA	promoter-TSS (NM_001256438)	promoter-TSS (NM_001256438)	-364	NR_023359	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
188487	chr5	154780921	154781380	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	23996	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
81963	chr16	11864621	11865280	+	0	NA	Intergenic	Intergenic	-13408	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
76032	chr15	72198471	72198630	+	0	NA	promoter-TSS (NM_001012642)	promoter-TSS (NM_001012642)	-763	NM_001012642	196996		NM_001012642	ENSG00000175318	GRAMD2A	GRAMD2	GRAM domain containing 2A	protein-coding
100036	chr17	58001451	58001830	+	0	NA	non-coding (NR_034041, exon 4 of 4)	non-coding (NR_034041, exon 4 of 4)	5606	NM_001078166	6426		NM_006924	ENSG00000136450	SRSF1	ASF|NEDFBA|SF2|SF2p33|SFRS1|SRp30a	serine and arginine rich splicing factor 1	protein-coding
169726	chr3	172193201	172193400	+	0	NA	intron (NM_022763, intron 3 of 25)	(TCCCT)n|Simple_repeat|Simple_repeat	152769	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
93641	chr17	19178351	19178980	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-9351	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
71709	chr15	20341401	20342700	+	0	NA	Intergenic	(AGCCAGCCA)n|Simple_repeat|Simple_repeat	59306	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
75701	chr15	67968201	67968400	+	0	NA	Intergenic	Intergenic	-86015	NM_016166	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
223601	chr8	144307021	144307280	+	0	NA	intron (NM_005526, intron 1 of 12)	L1M4|LINE|L1	10165	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
125371	chr2	11132301	11133680	+	0	NA	promoter-TSS (NM_182500)	promoter-TSS (NM_182500)	-138	NM_001371320	130813		NM_182500	ENSG00000150873	C2orf50	-	chromosome 2 open reading frame 50	protein-coding
213654	chr7	139775471	139776200	+	0	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	2163	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
80578	chr16	2867751	2868850	+	0	NA	Intergenic	CpG	-10130	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
208364	chr7	66627021	66627430	+	0	NA	Intergenic	L1MA4A|LINE|L1	-1656	NM_001167961	154881		NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
210810	chr7	100873251	100873430	+	0	NA	3' UTR (NM_003302, exon 9 of 9)	3' UTR (NM_003302, exon 9 of 9)	-1763	NM_001128854	51593		NM_015908	ENSG00000087087	SRRT	ARS2|ASR2|serrate	serrate, RNA effector molecule	protein-coding
158945	chr3	10163701	10163900	+	0	NA	Intergenic	AluSg|SINE|Alu	-1119	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
88760	chr16	86604421	86605250	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	26286	NM_005250	2300		NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7|OTSC11	forkhead box L1	protein-coding
181417	chr5	40755601	40756950	+	0	NA	promoter-TSS (NM_012382)	promoter-TSS (NM_012382)	-314	NM_012382	23548		NM_012382	ENSG00000113638	TTC33	OSRF	tetratricopeptide repeat domain 33	protein-coding
25435	chr10	6582751	6582850	+	0	NA	intron (NR_036502, intron 2 of 2)	MIRb|SINE|MIR	-2154	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
41824	chr11	67053851	67054530	+	0	NA	Intergenic	Intergenic	-2657	NM_001300886	29984		NM_014578	ENSG00000173156	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
131363	chr2	96184171	96184400	+	0	NA	TTS (NM_020151)	TTS (NM_020151)	-24131	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
163016	chr3	49794671	49794830	+	0	NA	intron (NM_001007540, intron 9 of 18)	intron (NM_001007540, intron 9 of 18)	5123	NM_001007540	389118		NM_001007540	ENSG00000187492	CDHR4	CDH29|PRO34300	cadherin related family member 4	protein-coding
11007	chr1	84688521	84688780	+	0	NA	intron (NM_014021, intron 1 of 14)	intron (NM_014021, intron 1 of 14)	1811	NM_001166294	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
121913	chr19	48414571	48416530	+	0	NA	intron (NM_000836, intron 7 of 13)	intron (NM_000836, intron 7 of 13)	21882	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
112764	chr19	7425021	7425480	+	0	NA	intron (NM_015318, intron 1 of 20)	intron (NM_015318, intron 1 of 20)	-14438	NM_001130955	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
125658	chr2	20049821	20050830	+	0	NA	intron (NM_014713, intron 1 of 6)	intron (NM_014713, intron 1 of 6)	1303	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
142414	chr20	3891701	3892830	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluSx|SINE|Alu	2449	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
145883	chr20	45948371	45948930	+	0	NA	TTS (NM_022095)	TTS (NM_022095)	13967	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
14890	chr1	146940321	146940580	+	0	NA	intron (NM_001278141, intron 1 of 36)	AluJb|SINE|Alu	1905	NM_001278141	149013		NM_001278141	ENSG00000268043	NBPF12	COAS1|KIAA1245	NBPF member 12	protein-coding
167559	chr3	129394571	129395050	+	0	NA	intron (NR_003111, intron 2 of 3)	(CA)n|Simple_repeat|Simple_repeat	2538	NR_002992	677797		NR_002992	ENSG00000207088	SNORA7B	ACA7B	small nucleolar RNA, H/ACA box 7B	snoRNA
148808	chr21	8248881	8250400	+	0	NA	TTS (NR_106782).2	TTS (NR_106782).2	135	NR_128716	103504739		NR_128716	ENSG00000277379	MIR6724-3	hsa-mir-6724-3	microRNA 6724-3	ncRNA
134500	chr2	143328971	143330800	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	200466	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
121282	chr19	46718001	46719350	+	0	NA	TTS (NM_013403)	TTS (NM_013403)	-1548	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
206190	chr7	28176021	28176680	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-4107	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
8842	chr1	43295621	43295880	+	0	NA	Intergenic	Intergenic	-5232	NM_001253357	7075		NM_005424	ENSG00000066056	TIE1	JTK14|LMPHM11|TIE	tyrosine kinase with immunoglobulin like and EGF like domains 1	protein-coding
5806	chr1	26580401	26581000	+	0	NA	Intergenic	AluSg|SINE|Alu	26158	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
53248	chr12	62601101	62601550	+	0	NA	TTS (NM_001278471)	TTS (NM_001278471)	2109	NR_121682	283416		NM_175895	ENSG00000221949	LINC01465	C12orf61	long intergenic non-protein coding RNA 1465	ncRNA
106696	chr18	23358471	23359170	+	0	NA	intron (NR_134876, intron 7 of 10)	intron (NR_134876, intron 7 of 10)	79141	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
172851	chr4	3288571	3288930	+	0	NA	Intergenic	Intergenic	-25397	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
39122	chr11	48109421	48110300	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	13078	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
229040	chr9	114328671	114328900	+	0	NA	Intergenic	AluSp|SINE|Alu	-1084	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
215772	chr8	2125871	2126030	+	0	NA	intron (NM_003970, intron 31 of 36).2	L1M2|LINE|L1	49361	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
131069	chr2	88669671	88669980	+	0	NA	Intergenic	Intergenic	-21848	NM_144563	22934		NM_144563	ENSG00000153574	RPIA	RPI|RPIAD	ribose 5-phosphate isomerase A	protein-coding
12580	chr1	108878271	108878430	+	0	NA	intron (NM_001321038, intron 1 of 14)	intron (NM_001321038, intron 1 of 14)	1365	NM_001321038	29899		NM_013296	ENSG00000121957	GPSM2	CMCS|DFNB82|LGN|PINS	G protein signaling modulator 2	protein-coding
194848	chr6	34428401	34429680	+	0	NA	Intergenic	Intergenic	-2915	NM_001202470	100529239		NM_001202470	ENSG00000270800	RPS10-NUDT3	-	RPS10-NUDT3 readthrough	protein-coding
201067	chr6	142671851	142671950	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-34011	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
19494	chr1	175146451	175147030	+	0	NA	intron (NM_022093, intron 18 of 18)	intron (NM_022093, intron 18 of 18)	46036	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
125908	chr2	24918051	24918480	+	0	NA	intron (NM_001377132, intron 2 of 21)	intron (NM_001377132, intron 2 of 21)	1320	NM_001377132	109		NM_004036	ENSG00000138031	ADCY3	AC-III|AC3|BMIQ19	adenylate cyclase 3	protein-coding
13615	chr1	116402201	116403380	+	0	NA	intron (NM_000701, intron 21 of 22)	intron (NM_000701, intron 21 of 22)	15769	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
14865	chr1	146409421	146410680	+	0	NA	Intergenic	U1|snRNA|snRNA	33243	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
7582	chr1	35179861	35180230	+	0	NA	intron (NR_136702, intron 9 of 11)	intron (NR_136702, intron 9 of 11)	13100	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
110834	chr19	2496521	2496800	+	0	NA	Intergenic	AluSx|SINE|Alu	20533	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
87707	chr16	74984421	74985800	+	0	NA	promoter-TSS (NM_001324172)	promoter-TSS (NM_001324172)	13	NM_030581	79726		NM_030581	ENSG00000103091	WDR59	CDW12|FP977|p90-120	WD repeat domain 59	protein-coding
128983	chr2	64711151	64711480	+	0	NA	Intergenic	Intergenic	-57402	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
97855	chr17	44984451	44984550	+	0	NA	Intergenic	CpG	-16197	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
17576	chr1	156842151	156842550	+	0	NA	intron (NM_014215, intron 18 of 21)	intron (NM_014215, intron 18 of 21)	16767	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
13774	chr1	117114851	117115350	+	0	NA	intron (NM_025188, intron 4 of 5)	intron (NM_025188, intron 4 of 5)	6649	NM_001145635	80263		NM_025188	ENSG00000134253	TRIM45	RNF99	tripartite motif containing 45	protein-coding
128212	chr2	53995971	53996130	+	0	NA	intron (NM_001320587, intron 2 of 5)	AluSq|SINE|Alu	24937	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
102211	chr17	75203371	75204180	+	0	NA	Intergenic	Intergenic	-1661	NM_001330472	79902		NM_024844	ENSG00000125450	NUP85	FROUNT|NPHS17|Nup75	nucleoporin 85	protein-coding
143123	chr20	23453551	23453850	+	0	NA	promoter-TSS (NM_130794)	promoter-TSS (NM_130794)	-824	NM_130794	140880		NM_080830	ENSG00000125831	CST11	CST8L|CTES2|SC13|dJ322G13.6	cystatin 11	protein-coding
83729	chr16	28555621	28555900	+	0	NA	intron (NM_138414, intron 1 of 9)	MLT2B1|LTR|ERVL	1840	NM_138414	112869		NM_138414	ENSG00000176476	SGF29	CCDC101|STAF36|TDRD29	SAGA complex associated factor 29	protein-coding
101264	chr17	66328071	66328780	+	0	NA	intron (NM_002737, intron 2 of 16)	L2b|LINE|L2	25812	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
141790	chr20	219571	219750	+	0	NA	Intergenic	L1M1|LINE|L1	-7598	NM_080831	140881		NM_080831	ENSG00000125903	DEFB129	C20orf87|DEFB-29|DEFB29|bA530N10.3|hBD-29	defensin beta 129	protein-coding
164935	chr3	71215951	71216250	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	28977	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
151460	chr21	46199771	46199930	+	0	NA	intron (NM_001145437, intron 16 of 20)	L1MC1|LINE|L1	-5691	NR_145780	109623452		NR_145780		SNORD159	-	small nucleolar RNA, C/D box 159	snoRNA
185180	chr5	119361151	119361350	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	5231	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
238263	chrX	148333971	148334350	+	0	NA	Intergenic	Intergenic	-166457	NM_001169124	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
172965	chr4	3871301	3872330	+	0	NA	Intergenic	CpG	83613	NR_130742	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
60383	chr13	40943371	40943530	+	0	NA	intron (NM_001370329, intron 7 of 9)	intron (NM_001370329, intron 7 of 9)	-21676	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
29419	chr10	70232901	70234200	+	0	NA	promoter-TSS (NM_021129)	promoter-TSS (NM_021129)	-121	NM_021129	5464		NM_021129	ENSG00000180817	PPA1	HEL-S-66p|IOPPP|PP|PP1|SID6-8061	inorganic pyrophosphatase 1	protein-coding
118781	chr19	38394101	38394930	+	0	NA	intron (NR_073032, intron 4 of 5)	MIR|SINE|MIR	4223	NR_073032	399473		NM_001039616	ENSG00000188766	SPRED3	Eve-3|spred-3	sprouty related EVH1 domain containing 3	protein-coding
161112	chr3	38204801	38205630	+	0	NA	intron (NM_005109, intron 4 of 17)	L1M1|LINE|L1	39678	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
90753	chr17	2044001	2044780	+	0	NA	TTS (NR_144476)	TTS (NR_144476)	2368	NM_080822	124641		NM_080822	ENSG00000262664	OVCA2	-	OVCA2 serine hydrolase domain containing	protein-coding
66081	chr14	59186021	59186280	+	0	NA	Intergenic	Intergenic	-2517	NM_001270520	23002		NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
207706	chr7	45952771	45952950	+	0	NA	Intergenic	L1PA3|LINE|L1	-31588	NM_000598	3486		NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP-3|IBP3|IGFBP-3	insulin like growth factor binding protein 3	protein-coding
112663	chr19	6926051	6926350	+	0	NA	intron (NM_001974, intron 15 of 20)	intron (NM_001974, intron 15 of 20)	38621	NM_001256253	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
33443	chr10	119028851	119030000	+	0	NA	promoter-TSS (NM_199461)	promoter-TSS (NM_199461)	-289	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
106940	chr18	26551001	26551230	+	0	NA	intron (NM_001258222, intron 1 of 4)	CpG	-1301	NM_001258221	284252		NM_198991	ENSG00000134504	KCTD1	C18orf5	potassium channel tetramerization domain containing 1	protein-coding
65857	chr14	55054401	55054900	+	0	NA	intron (NM_144578, intron 1 of 3)	intron (NM_144578, intron 1 of 3)	3003	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
122446	chr19	49489601	49490830	+	0	NA	promoter-TSS (NR_000020)	promoter-TSS (NR_000020)	249	NR_000021	26819		NR_000021	ENSG00000201675	SNORD32A	RNU32|U32|U32A	small nucleolar RNA, C/D box 32A	snoRNA
133048	chr2	112183521	112183780	+	0	NA	intron (NM_153214, intron 6 of 7)	intron (NM_153214, intron 6 of 7)	45265	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
28977	chr10	63253351	63253900	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSx1|SINE|Alu	15598	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
224259	chr9	6006571	6007400	+	0	NA	promoter-TSS (NR_039811)	promoter-TSS (NR_039811)	-841	NR_039811	100616288		NR_039811	ENSG00000263575	MIR4665	mir-4665	microRNA 4665	ncRNA
58689	chr12	132551051	132551800	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-30572	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
223739	chr8	144503901	144504100	+	0	NA	promoter-TSS (NM_005309)	promoter-TSS (NM_005309)	-140	NM_005309	2875		NM_005309	ENSG00000167701	GPT	AAT1|ALT|ALT1|GPT1|SGPT	glutamic--pyruvic transaminase	protein-coding
183820	chr5	83430451	83430750	+	0	NA	Intergenic	Intergenic	-41074	NM_001164097	1462		NM_004385	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
231962	chr9	133150901	133151100	+	0	NA	Intergenic	AluJo|SINE|Alu	-1790	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
105095	chr17	82124101	82124500	+	0	NA	intron (NM_001367828, intron 16 of 16)	L1M7|LINE|L1	-26064	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
67471	chr14	70892901	70893900	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-14059	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
104493	chr17	81160371	81161150	+	0	NA	intron (NM_001080395, intron 1 of 13)	intron (NM_001080395, intron 1 of 13)	-4747	NM_001354639	388428		NM_207389	ENSG00000225180	PVALEF	AATK-AS1	parvalbumin like EF-hand containing	protein-coding
199144	chr6	111722621	111722900	+	0	NA	intron (NM_002037, intron 3 of 13)	MER20|DNA|hAT-Charlie	36371	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
168182	chr3	140939071	140939650	+	0	NA	Intergenic	L1PA7|LINE|L1	-2476	NM_018155	55186		NM_018155	ENSG00000114120	SLC25A36	HHF8|PNC2	solute carrier family 25 member 36	protein-coding
52287	chr12	54585171	54585530	+	0	NA	intron (NM_006741, intron 1 of 6)	intron (NM_006741, intron 1 of 6)	3309	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
141461	chr2	241058701	241059100	+	0	NA	intron (NM_001080437, intron 16 of 31)	AluYf1|SINE|Alu	43387	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
127832	chr2	44981621	44981900	+	0	NA	Intergenic	Intergenic	27692	NM_016932	10736		NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
111711	chr19	4322851	4323030	+	0	NA	intron (NM_024333, intron 10 of 12)	intron (NM_024333, intron 10 of 12)	15887	NM_001013841	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
151791	chr22	18155871	18156550	+	0	NA	intron (NM_017414, intron 1 of 10)	LTR12C|LTR|ERV1	6040	NM_017414	11274		NM_017414	ENSG00000184979	USP18	ISG43|PTORCH2|UBP43	ubiquitin specific peptidase 18	protein-coding
220251	chr8	97638271	97638830	+	0	NA	Intergenic	Intergenic	-5634	NM_178812	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
6687	chr1	29161751	29162480	+	0	NA	intron (NM_005626, intron 1 of 5)	intron (NM_005626, intron 1 of 5)	19785	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
171248	chr3	195806251	195806550	+	0	NA	intron (NM_018406, intron 1 of 24)	L2a|LINE|L2	5529	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
210204	chr7	99079251	99079350	+	0	NA	intron (NM_181349, intron 1 of 17)	intron (NM_181349, intron 1 of 17)	64808	NM_181349	57154		NM_020429	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
139093	chr2	218883341	218884330	+	0	NA	intron (NM_025216, intron 2 of 3)	CpG	2983	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
202506	chr6	158517451	158517850	+	0	NA	Intergenic	MER39|LTR|ERV1	-18990	NM_020823	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
53951	chr12	71846251	71846800	+	0	NA	intron (NR_027449, intron 1 of 15)	intron (NR_027449, intron 1 of 15)	4458	NR_024072	729633		NR_024072		MRS2P2	-	MRS2 pseudogene 2	pseudo
204385	chr7	3027071	3027430	+	0	NA	intron (NM_001324281, intron 1 of 25)	intron (NM_001324281, intron 1 of 25)	16617	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
153771	chr22	29553351	29554800	+	0	NA	promoter-TSS (NM_001002878)	promoter-TSS (NM_001002878)	-318	NM_001002877	8563		NM_003678	ENSG00000100296	THOC5	C22orf19|Fmip|PK1.3|fSAP79	THO complex subunit 5	protein-coding
120562	chr19	44985201	44985400	+	0	NA	exon (NM_001294, exon 6 of 14)	exon (NM_001294, exon 6 of 14)	-16164	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
90273	chr17	996021	997730	+	0	NA	promoter-TSS (NM_013337)	promoter-TSS (NM_013337)	-254	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
166047	chr3	108722721	108723200	+	0	NA	Intergenic	L2c|LINE|L2	34323	NM_032579	84666		NM_032579	ENSG00000163515	RETNLB	FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2	resistin like beta	protein-coding
45967	chr11	121454551	121454650	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	2286	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
22523	chr1	221837921	221838600	+	0	NA	intron (NR_125989, intron 2 of 3)	L2c|LINE|L2	2406	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
30903	chr10	87046721	87047180	+	0	NA	Intergenic	AluJo|SINE|Alu	26656	NM_001146157	643161		NM_001146157	ENSG00000188100	FAM25A	bA96C23.5	family with sequence similarity 25 member A	protein-coding
79555	chr16	969951	971380	+	0	NA	intron (NM_001352017, intron 1 of 11)	CpG	319	NM_022773	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
179273	chr4	176318271	176318630	+	0	NA	Intergenic	Intergenic	-1516	NM_021928	60559		NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22|SPC22/23|SPC23|SPC3|YLR066W	signal peptidase complex subunit 3	protein-coding
101786	chr17	73202771	73202930	+	0	NA	intron (NM_018714, intron 7 of 13)	intron (NM_018714, intron 7 of 13)	9795	NM_018714	9382		NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
149584	chr21	33259571	33259730	+	0	NA	intron (NM_001289128, intron 7 of 7)	intron (NM_001289128, intron 7 of 7)	6610	NR_038974	100288432		NR_038974		IL10RB-DT	IFNAR2-AS1|IL10RB-AS1	IL10RB divergent transcript	ncRNA
36072	chr11	2983751	2984500	+	0	NA	intron (NM_001369380, intron 1 of 14).2	AluJo|SINE|Alu	6978	NM_001369379	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
90086	chr16	90023971	90024130	+	0	NA	intron (NM_001286208, intron 1 of 9)	AluSx|SINE|Alu	1370	NM_001481	2622		NM_001481	ENSG00000141013	GAS8	CILD33|DRC4|GAS11	growth arrest specific 8	protein-coding
91788	chr17	7017001	7017300	+	0	NA	TTS (NR_029712)	TTS (NR_029712)	551	NR_029712	406971		NR_029712	ENSG00000284112	MIR195	MIRN195|miRNA195|mir-195	microRNA 195	ncRNA
4658	chr1	22275801	22276130	+	0	NA	Intergenic	Intergenic	9726	NR_039613	100616433		NR_039613	ENSG00000266564	MIR4418	-	microRNA 4418	ncRNA
24982	chr10	3080671	3080830	+	0	NA	intron (NM_001345944, intron 1 of 21)	intron (NM_001345944, intron 1 of 21)	11561	NM_001345944	5214		NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
111442	chr19	3809221	3809530	+	0	NA	intron (NM_015174, intron 16 of 18)	intron (NM_015174, intron 16 of 18)	-7576	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
130885	chr2	87420251	87420550	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-35027	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
164502	chr3	61484001	61484200	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-77471	NM_001375471	5793		NM_002841	ENSG00000144724	PTPRG	HPTPG|PTPG|R-PTP-GAMMA|RPTPG	protein tyrosine phosphatase receptor type G	protein-coding
143770	chr20	32409851	32410150	+	0	NA	intron (NM_015338, intron 3 of 11)	L1MC4|LINE|L1	50935	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
108716	chr18	77081521	77081930	+	0	NA	intron (NM_001025100, intron 2 of 3)	L1M4|LINE|L1	51058	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
37482	chr11	18383281	18385100	+	0	NA	Intergenic	Intergenic	-3597	NR_036116	100423016		NR_036116	ENSG00000264603	MIR3159	-	microRNA 3159	ncRNA
61358	chr13	51066301	51066700	+	0	NA	promoter-TSS (NR_003923)	promoter-TSS (NR_003923)	-343	NR_003923	2974		NM_004129	ENSG00000293412	GUCY1B2	GC-SB2	guanylate cyclase 1 soluble subunit beta 2 (pseudogene)	pseudo
138180	chr2	202649121	202649380	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	14281	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
146680	chr20	50519411	50519900	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	9272	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
173269	chr4	7049721	7049980	+	0	NA	intron (NM_152293, intron 1 of 1)	intron (NM_152293, intron 1 of 1)	-3619	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
85260	chr16	48526451	48526800	+	0	NA	Intergenic	Intergenic	83555	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
238686	chrX	154060171	154060330	+	0	NA	intron (NM_001316337, intron 2 of 4)	intron (NM_001316337, intron 2 of 4)	36719	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
192900	chr6	27561371	27561730	+	0	NA	Intergenic	Intergenic	-88432	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
172357	chr4	1727401	1727600	+	0	NA	intron (NM_006342, intron 3 of 15)	intron (NM_006342, intron 3 of 15)	5979	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
82343	chr16	15953471	15953630	+	0	NA	intron (NM_004996, intron 1 of 30)	MIR|SINE|MIR	3934	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
91123	chr17	3693421	3694280	+	0	NA	intron (NM_002561, intron 1 of 11)	AluSz|SINE|Alu	2305	NM_001204519	5026		NM_002561	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X 5	protein-coding
74138	chr15	55247351	55248250	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	22486	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
49528	chr12	25958401	25959400	+	0	NA	5' UTR (NM_001164748, exon 1 of 5)	5' UTR (NM_001164748, exon 1 of 5)	218	NM_007211	11228		NM_007211	ENSG00000123094	RASSF8	C12orf2|HOJ1	Ras association domain family member 8	protein-coding
34003	chr10	124688421	124689480	+	0	NA	intron (NM_014661, intron 3 of 4)	intron (NM_014661, intron 3 of 4)	-15078	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
227202	chr9	88173451	88173630	+	0	NA	Intergenic	Intergenic	-35059	NM_001350978	645961		NM_001166137	ENSG00000177910	SPATA31C2	FAM75C2	SPATA31 subfamily C member 2	protein-coding
162759	chr3	49061401	49061600	+	0	NA	intron (NM_001320580, intron 3 of 10)	intron (NM_001320580, intron 3 of 10)	-32102	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
13432	chr1	114331901	114332400	+	0	NA	Intergenic	Intergenic	-178281	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
120475	chr19	44741571	44742430	+	0	NA	Intergenic	Intergenic	-6708	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
117564	chr19	21312021	21312280	+	0	NA	intron (NM_021269, intron 1 of 3)	AluSx|SINE|Alu	17260	NM_021269	7562		NM_021269	ENSG00000182141	ZNF708	KOX8|ZNF15|ZNF15L1	zinc finger protein 708	protein-coding
112286	chr19	5827471	5829730	+	0	NA	TTS (NM_004558)	TTS (NM_004558)	10192	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
78201	chr15	90579401	90579800	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	49677	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
100584	chr17	63426651	63426750	+	0	NA	3' UTR (NM_025185, exon 26 of 26)	3' UTR (NM_025185, exon 26 of 26)	13567	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
110007	chr19	1431671	1432050	+	0	NA	intron (NM_170711, intron 10 of 12)	intron (NM_170711, intron 10 of 12)	-6536	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
24791	chr1	248942201	248942800	+	0	NA	Intergenic	Intergenic	36257	NM_001017434	267002		NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
13254	chr1	112710751	112711830	+	0	NA	exon (NM_005167, exon 6 of 10)	exon (NM_005167, exon 6 of 10)	-3887	NM_001042678	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
146569	chr20	50071001	50071780	+	0	NA	Intergenic	Intergenic	-29761	NR_051976	100887755		NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
231616	chr9	131573651	131573950	+	0	NA	Intergenic	Intergenic	28277	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
94986	chr17	32341701	32342850	+	0	NA	promoter-TSS (NM_022344)	promoter-TSS (NM_022344)	-102	NM_022344	64149		NM_022344	ENSG00000108666	C17orf75	NJMU-R1|SRI2	chromosome 17 open reading frame 75	protein-coding
85295	chr16	48630121	48630900	+	0	NA	Intergenic	Intergenic	-20330	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
20082	chr1	186325301	186326030	+	0	NA	intron (NM_003292, intron 42 of 50)	intron (NM_003292, intron 42 of 50)	29386	NM_005807	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
192650	chr6	26171251	26172400	+	0	NA	TTS (NM_138720)	TTS (NM_138720)	-11936	NM_003523	8344		NM_003523	ENSG00000274290	H2BC6	H2B.h|H2B/h|H2BC10|H2BC4|H2BC7|H2BC8|H2BFH|HIST1H2BE|dJ221C16.8	H2B clustered histone 6	protein-coding
131110	chr2	90245221	90245630	+	0	NA	Intergenic	TAR1|Satellite|telo	-607518	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
200928	chr6	139153551	139153650	+	0	NA	intron (NM_016217, intron 1 of 3)	AluSx|SINE|Alu	18520	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
70510	chr14	102298071	102298700	+	0	NA	intron (NR_148552, intron 1 of 9)	LTR12C|LTR|ERV1	6779	NM_014226	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
69943	chr14	99645021	99645680	+	0	NA	exon (NM_001127258, exon 1 of 9)	exon (NM_001127258, exon 1 of 9)	221	NM_001127258	84439		NM_032425	ENSG00000182218	HHIPL1	KIAA1822|UNQ9245	HHIP like 1	protein-coding
230513	chr9	128280351	128280850	+	0	NA	intron (NM_001040011, intron 2 of 4)	AluSc8|SINE|Alu	4324	NM_001040011	375757		NM_001040011	ENSG00000175854	SWI5	C9orf119|SAE3	SWI5 homologous recombination repair protein	protein-coding
219401	chr8	70604221	70604680	+	0	NA	intron (NM_001317804, intron 2 of 11)	FLAM_A|SINE|Alu	3219	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
74831	chr15	63496801	63497400	+	0	NA	Intergenic	Intergenic	-7411	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
156681	chr22	41662421	41662680	+	0	NA	intron (NM_001288976, intron 12 of 12)	L1ME3G|LINE|L1	26317	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
229454	chr9	121650321	121650580	+	0	NA	intron (NM_032552, intron 1 of 16)	intron (NM_032552, intron 1 of 16)	83348	NM_032552	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
114803	chr19	13792001	13793100	+	0	NA	Intergenic	AluY|SINE|Alu	-2893	NM_001367834	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
63577	chr14	20459001	20459850	+	0	NA	exon (NM_001100814, exon 5 of 7)	exon (NM_001100814, exon 5 of 7)	2009	NM_144568	90809		NM_144568	ENSG00000165782	PIP4P1	C14orf9|TMEM55B	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1	protein-coding
186499	chr5	138333001	138333450	+	0	NA	intron (NR_146628, intron 1 of 3)	MER5A1|DNA|hAT-Charlie	1120	NR_146628	100128966		NR_146628	ENSG00000120709	LOC100128966	-	uncharacterized LOC100128966	ncRNA
25612	chr10	8068451	8069150	+	0	NA	intron (NM_001002295, intron 4 of 5)	intron (NM_001002295, intron 4 of 5)	14112	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
176644	chr4	99934621	99934880	+	0	NA	intron (NM_001031723, intron 1 of 7)	AluSx1|SINE|Alu	11868	NM_001278311	79982		NM_024920	ENSG00000164031	DNAJB14	EGNR9427|PRO34683	DnaJ heat shock protein family (Hsp40) member B14	protein-coding
160755	chr3	32568971	32569200	+	0	NA	intron (NM_016141, intron 2 of 12)	MIR|SINE|MIR	1773	NM_016141	51143		NM_016141	ENSG00000144635	DYNC1LI1	DLC-A|DLIC-1|DNCLI1|LIC1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding
141338	chr2	240576251	240576850	+	0	NA	exon (NM_018226, exon 9 of 11)	exon (NM_018226, exon 9 of 11)	8066	NM_018226	57140		NM_018226	ENSG00000142327	RNPEPL1	-	arginyl aminopeptidase like 1	protein-coding
148977	chr21	13981821	13982150	+	0	NA	Intergenic	REP522|Satellite|telo	-1541	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
104215	chr17	80586401	80586800	+	0	NA	intron (NM_020761, intron 1 of 33)	intron (NM_020761, intron 1 of 33)	41762	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
3098	chr1	12204051	12204580	+	0	NA	intron (NM_001066, intron 9 of 9)	intron (NM_001066, intron 9 of 9)	12602	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
29843	chr10	72341971	72342130	+	0	NA	intron (NR_157570, intron 3 of 8)	intron (NR_157570, intron 3 of 8)	12869	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
86427	chr16	66878951	66879050	+	0	NA	Intergenic	AluYa5|SINE|Alu	-1515	NM_001329931	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
40499	chr11	64265571	64265930	+	0	NA	intron (NM_001316314, intron 25 of 31)	intron (NM_001316314, intron 25 of 31)	-4781	NM_001378076	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
56067	chr12	110580321	110580580	+	0	NA	intron (NM_139283, intron 1 of 5)	AluSx|SINE|Alu	2868	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
122479	chr19	49554851	49555300	+	0	NA	TTS (NM_015953)	TTS (NM_015953)	25481	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
33819	chr10	123573171	123573530	+	0	NA	Intergenic	Intergenic	-93005	NM_153442	2849		NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding
43887	chr11	88355771	88356250	+	0	NA	Intergenic	Intergenic	-18274	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
77784	chr15	86612551	86612650	+	0	NA	intron (NM_152336, intron 22 of 24)	MER4D0|LTR|ERV1	-295632	NR_046012	727915		NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
73586	chr15	44531951	44532250	+	0	NA	Intergenic	AluSq|SINE|Alu	4800	NR_034171	645212		NR_034170	ENSG00000179523	EIF3J-DT	EIF3J-AS1	EIF3J divergent transcript	ncRNA
34669	chr10	133350321	133350730	+	0	NA	intron (NM_145202, intron 2 of 4)	intron (NM_145202, intron 2 of 4)	3152	NM_145202	118471		NM_145202	ENSG00000165828	PRAP1	PRO1195|UPA	proline rich acidic protein 1	protein-coding
57114	chr12	121110351	121110880	+	0	NA	Intergenic	MIR3|SINE|MIR	-22261	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
46503	chr11	128399151	128399450	+	0	NA	Intergenic	Intergenic	123010	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
62261	chr13	98565771	98566680	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	10882	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
231134	chr9	129844951	129845050	+	0	NA	intron (NM_001008563, intron 1 of 25)	AluSz6|SINE|Alu	9542	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
174855	chr4	48667001	48667600	+	0	NA	intron (NM_015030, intron 3 of 63)	intron (NM_015030, intron 3 of 63)	112979	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
125877	chr2	24586101	24586530	+	0	NA	intron (NM_147233, intron 1 of 20)	FLAM_A|SINE|Alu	1838	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
108133	chr18	62422921	62423550	+	0	NA	Intergenic	Intergenic	97925	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
95616	chr17	37604551	37605480	+	0	NA	intron (NM_001163544, intron 1 of 20).2	Tigger1|DNA|TcMar-Tigger	4403	NM_001163546	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
189135	chr5	171306371	171306530	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-2798	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
42848	chr11	73177821	73178680	+	0	NA	Intergenic	Intergenic	-35932	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
212316	chr7	127252701	127253000	+	0	NA	promoter-TSS (NM_000845)	promoter-TSS (NM_000845)	91	NM_001371087	2918		NM_000845	ENSG00000179603	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	glutamate metabotropic receptor 8	protein-coding
179540	chr4	184985121	184985380	+	0	NA	Intergenic	Intergenic	-33591	NM_001300782	391723		NM_001029887	ENSG00000187821	HELT	HCM1228|HESL|Mgn|bHLHb44	helt bHLH transcription factor	protein-coding
166229	chr3	112118171	112118550	+	0	NA	TTS (NM_001171747).2	TTS (NM_001171747).2	5559	NR_030292	693152		NR_030292	ENSG00000207940	MIR567	MIRN567|hsa-mir-567	microRNA 567	ncRNA
64882	chr14	35356071	35356430	+	0	NA	Intergenic	Intergenic	48499	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
176743	chr4	101417821	101418800	+	0	NA	Intergenic	Intergenic	70533	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
135487	chr2	161586601	161586800	+	0	NA	Intergenic	Intergenic	-37635	NM_001354450	57282		NM_022058	ENSG00000144290	SLC4A10	NBCn2|NCBE	solute carrier family 4 member 10	protein-coding
205489	chr7	17861071	17861830	+	0	NA	intron (NM_015132, intron 9 of 25)	MER50|LTR|ERV1	79044	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
3408	chr1	15758671	15759630	+	0	NA	intron (NM_001024216, intron 1 of 6)	CpG	355	NM_001024216	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
139399	chr2	222311271	222311630	+	0	NA	Intergenic	Intergenic	-7021	NR_136638	440934		NR_136638	ENSG00000291155	CT75	-	cancer/testis associated transcript 75	ncRNA
217737	chr8	30721701	30722180	+	0	NA	intron (NM_001195104, intron 1 of 10)	AluSz|SINE|Alu	5906	NM_000637	2936		NM_000637	ENSG00000104687	GSR	GR|GSRD|HEL-75|HEL-S-122m	glutathione-disulfide reductase	protein-coding
209397	chr7	76322501	76323300	+	0	NA	Intergenic	Intergenic	20227	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
177153	chr4	108133771	108133930	+	0	NA	intron (NM_016269, intron 3 of 11)	L3|LINE|CR1	32947	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
2697	chr1	10637251	10637550	+	0	NA	3' UTR (NM_001079843, exon 21 of 21)	3' UTR (NM_001079843, exon 21 of 21)	159246	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
183571	chr5	80152401	80153300	+	0	NA	intron (NM_001174072, intron 8 of 11)	AluSx1|SINE|Alu	-69185	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
62592	chr13	100001201	100001400	+	0	NA	Intergenic	AluSx|SINE|Alu	-3391	NR_047483	100861542		NR_047483	ENSG00000260738	LINC00554	lncZic2	long intergenic non-protein coding RNA 554	ncRNA
174961	chr4	49275151	49275500	+	0	NA	Intergenic	TAR1|Satellite|telo	288683	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
44572	chr11	108232671	108233030	+	0	NA	intron (NM_000051, intron 4 of 62)	intron (NM_000051, intron 4 of 62)	9321	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
42141	chr11	67647971	67649130	+	0	NA	intron (NM_080658, intron 1 of 7)	intron (NM_080658, intron 1 of 7)	2180	NM_080658	91703		NM_080658	ENSG00000132744	ACY3	ACY-3|HCBP1	aminoacylase 3	protein-coding
162931	chr3	49465651	49466250	+	0	NA	Intergenic	Intergenic	-2753	NM_001177643	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
117105	chr19	19195101	19195300	+	0	NA	intron (NM_134440, intron 3 of 8)	AluYb8|SINE|Alu	2265	NM_001370234	8625		NM_003721	ENSG00000064490	RFXANK	ANKRA1|BLS|F14150_1|RFX-B	regulatory factor X associated ankyrin containing protein	protein-coding
61196	chr13	49302371	49303030	+	0	NA	Intergenic	L2a|LINE|L2	54775	NR_036439	81602		NM_030911	ENSG00000102543	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
202887	chr6	159979101	159979800	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	10368	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
132889	chr2	111315171	111315830	+	0	NA	intron (NR_136161, intron 3 of 5)	intron (NR_136161, intron 3 of 5)	5586	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
195741	chr6	39361951	39362250	+	0	NA	intron (NM_001351566, intron 4 of 9)	intron (NM_001351566, intron 4 of 9)	-39132	NM_001363784	83795		NM_032115	ENSG00000095981	KCNK16	K2p16.1|TALK-1|TALK1	potassium two pore domain channel subfamily K member 16	protein-coding
93010	chr17	17209701	17209950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3492	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
625	chr1	1327651	1329130	+	0	NA	3' UTR (NM_001029885, exon 3 of 3)	3' UTR (NM_001029885, exon 3 of 3)	-2890	NM_152228	83756		NM_152228	ENSG00000169962	TAS1R3	T1R3	taste 1 receptor member 3	protein-coding
136624	chr2	179031601	179032430	+	0	NA	intron (NM_173648, intron 2 of 23)	intron (NM_173648, intron 2 of 23)	18122	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
148124	chr20	63455251	63455550	+	0	NA	intron (NM_001382235, intron 1 of 16)	intron (NM_001382235, intron 1 of 16)	17255	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
40563	chr11	64343821	64344780	+	0	NA	exon (NM_032251, exon 14 of 27)	exon (NM_032251, exon 14 of 27)	-2396	NR_106977	102466815		NR_106977	ENSG00000278359	MIR7155	hsa-mir-7155	microRNA 7155	ncRNA
72307	chr15	31206901	31207800	+	0	NA	Intergenic	Intergenic	-8671	NR_135834	102725022		NR_135834		LINC02352	-	long intergenic non-protein coding RNA 2352	ncRNA
35507	chr11	1540801	1542580	+	0	NA	Intergenic	Intergenic	30581	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
168205	chr3	141234321	141234950	+	0	NA	intron (NM_152282, intron 2 of 7)	intron (NM_152282, intron 2 of 7)	2810	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
133067	chr2	112415471	112416130	+	0	NA	intron (NM_005054, intron 6 of 22).3	AluSc|SINE|Alu	17814	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
123984	chr19	55439351	55439750	+	0	NA	intron (NM_001145176, intron 2 of 3)	L2c|LINE|L2	3313	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
228639	chr9	106312921	106313180	+	0	NA	Intergenic	L3|LINE|CR1	-287878	NR_107048	102465995		NR_107048	ENSG00000277889	MIR8081	hsa-mir-8081	microRNA 8081	ncRNA
203069	chr6	166275701	166276400	+	0	NA	Intergenic	Intergenic	32342	NM_175922	285800		NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
19267	chr1	172704771	172704930	+	0	NA	Intergenic	Intergenic	45747	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
147058	chr20	53692451	53692750	+	0	NA	Intergenic	L2a|LINE|L2	84246	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
79448	chr16	717401	717600	+	0	NA	3' UTR (NM_024042, exon 4 of 4)	3' UTR (NM_024042, exon 4 of 4)	2382	NM_024042	79006		NM_024042	ENSG00000103260	METRN	C16orf23|c380A1.2	meteorin, glial cell differentiation regulator	protein-coding
182993	chr5	72234071	72234930	+	0	NA	intron (NM_001286751, intron 5 of 10)	A-rich|Low_complexity|Low_complexity	54713	NM_001324255	4131		NM_005909	ENSG00000131711	MAP1B	DFNA83|FUTSCH|MAP5|PPP1R102|PVNH9	microtubule associated protein 1B	protein-coding
238328	chrX	149532951	149533450	+	0	NA	intron (NR_027455, intron 6 of 9)	intron (NR_027455, intron 6 of 9)	6552	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
223528	chr8	144114751	144114850	+	0	NA	exon (NM_001316309, exon 21 of 24)	exon (NM_001316309, exon 21 of 24)	7061	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
73782	chr15	45648751	45649130	+	0	NA	intron (NM_021199, intron 1 of 9)	intron (NM_021199, intron 1 of 9)	13911	NM_021199	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
126973	chr2	36351921	36352700	+	0	NA	Intergenic	(CCCCAC)n|Simple_repeat|Simple_repeat	3260	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
15163	chr1	148963571	148963930	+	0	NA	intron (NM_001198834, intron 9 of 43)	AluY|SINE|Alu	11293	NM_001350520	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
53112	chr12	57782451	57783850	+	0	NA	TTS (NM_015433)	TTS (NM_015433)	363	NM_001172695	10102		NM_005726	ENSG00000123297	TSFM	EFTS|EFTSMT	Ts translation elongation factor, mitochondrial	protein-coding
113681	chr19	10398771	10398930	+	0	NA	intron (NM_007065, intron 1 of 7)	MIR|SINE|MIR	4688	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
67300	chr14	69547951	69548260	+	0	NA	Intergenic	CpG	26766	NM_001271507	56936		NM_020181	ENSG00000267909	CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
41978	chr11	67371371	67372200	+	0	NA	intron (NM_001166212, intron 1 of 2)	intron (NM_001166212, intron 1 of 2)	1813	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
50007	chr12	42329871	42330030	+	0	NA	intron (NM_001364826, intron 2 of 9)	LTR5B|LTR|ERVK	-1848	NM_001364834	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
14375	chr1	144148571	144148730	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	99555	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
120798	chr19	45458901	45459300	+	0	NA	Intergenic	Intergenic	-7553	NM_001369413	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
59560	chr13	27362021	27362780	+	0	NA	Intergenic	Intergenic	-62219	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
221737	chr8	127668921	127669650	+	0	NA	Intergenic	Intergenic	64682	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
103962	chr17	79932821	79933080	+	0	NA	3' UTR (NM_001271844, exon 8 of 8)	3' UTR (NM_001271844, exon 8 of 8)	-6225	NR_110850	101928766		NR_110850	ENSG00000262585	LINC01979	-	long intergenic non-protein coding RNA 1979	ncRNA
209073	chr7	74790851	74790950	+	0	NA	Intergenic	Intergenic	16938	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
18011	chr1	160560371	160562100	+	0	NA	intron (NM_001184882, intron 1 of 5)	L1PA11|LINE|L1	18261	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
210429	chr7	100088401	100090050	+	0	NA	intron (NM_006833, intron 1 of 9)	intron (NM_006833, intron 1 of 9)	256	NM_006833	10980		NM_006833	ENSG00000168090	COPS6	CSN6|MOV34-34KD	COP9 signalosome subunit 6	protein-coding
116771	chr19	18500971	18502530	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	20320	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
139520	chr2	224567421	224567680	+	0	NA	intron (NM_003590, intron 1 of 15)	AluY|SINE|Alu	2405	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
136723	chr2	181177821	181178330	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	54238	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
201048	chr6	142195401	142195600	+	0	NA	intron (NM_001286371, intron 5 of 6)	L1MEc|LINE|L1	48237	NM_016485	51534		NM_016485	ENSG00000009844	VTA1	6orf55|C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1	vesicle trafficking 1	protein-coding
14423	chr1	144364971	144365530	+	0	NA	Intergenic	Intergenic	8409	NM_001164261	645142		NM_001164261	ENSG00000289549	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding
194867	chr6	34568971	34569330	+	0	NA	Intergenic	Intergenic	-12817	NM_001252294	25803		NM_012391	ENSG00000124664	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding
170587	chr3	186881821	186882530	+	0	NA	Intergenic	Intergenic	-20807	NR_046662	100874095		NR_046662	ENSG00000226482	ADIPOQ-AS1	-	ADIPOQ antisense RNA 1	ncRNA
190369	chr5	179743001	179743500	+	0	NA	intron (NM_014757, intron 1 of 4)	AluSp|SINE|Alu	10428	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
215549	chr7	158795571	158796050	+	0	NA	intron (NM_020728, intron 3 of 21)	intron (NM_020728, intron 3 of 21)	33699	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
166172	chr3	111671271	111671630	+	0	NA	Intergenic	Intergenic	-3226	NM_153268	257068		NM_153268	ENSG00000240891	PLCXD2	-	phosphatidylinositol specific phospholipase C X domain containing 2	protein-coding
59595	chr13	27587071	27587230	+	0	NA	intron (NM_153371, intron 1 of 9)	intron (NM_153371, intron 1 of 9)	33379	NM_153371	222484		NM_153371	ENSG00000139517	LNX2	PDZRN1	ligand of numb-protein X 2	protein-coding
118302	chr19	35445971	35446600	+	0	NA	Intergenic	Intergenic	-1972	NM_005306	2867		NM_005306	ENSG00000126262	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
230132	chr9	127728801	127729200	+	0	NA	intron (NM_144965, intron 12 of 13)	intron (NM_144965, intron 12 of 13)	6294	NM_001252018	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
102354	chr17	75509901	75510100	+	0	NA	promoter-TSS (NM_001142643)	promoter-TSS (NM_001142643)	-110	NM_001142643	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
41741	chr11	66675321	66675650	+	0	NA	intron (NM_031492, intron 2 of 3)	intron (NM_031492, intron 2 of 3)	2402	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
45749	chr11	119188121	119188580	+	0	NA	intron (NM_024791, intron 7 of 10)	intron (NM_024791, intron 7 of 10)	2291	NR_145809	109623467		NR_145809		SNORD150	-	small nucleolar RNA, C/D box 150	snoRNA
233264	chr9	137282871	137283030	+	0	NA	TTS (NM_017723)	TTS (NM_017723)	5224	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
54907	chr12	96063101	96063400	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-19730	NM_001256643	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
65658	chr14	52402351	52403280	+	0	NA	Intergenic	L2c|LINE|L2	88503	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
73991	chr15	52024251	52024730	+	0	NA	intron (NM_002748, intron 1 of 5)	AluY|SINE|Alu	5271	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
62796	chr13	109570101	109570700	+	0	NA	Intergenic	Intergenic	-157874	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
44776	chr11	112454201	112454400	+	0	NA	Intergenic	Intergenic	-27932	NR_120559	101928823		NR_120559	ENSG00000254968	LINC02763	-	long intergenic non-protein coding RNA 2763	ncRNA
121105	chr19	45928851	45928950	+	0	NA	Intergenic	Intergenic	-14122	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
72936	chr15	40435071	40437930	+	0	NA	TTS (NM_001354598)	TTS (NM_001354598)	-3257	NM_001301132	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
63731	chr14	21215651	21216780	+	0	NA	intron (NM_001077443, intron 4 of 7)	intron (NM_001077443, intron 4 of 7)	-9315	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
218754	chr8	58914721	58915150	+	0	NA	intron (NM_014729, intron 3 of 8)	L1PA2|LINE|L1	204212	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
91316	chr17	4361971	4362550	+	0	NA	intron (NM_003342, intron 1 of 5)	intron (NM_003342, intron 1 of 5)	4414	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
228701	chr9	108994701	108994900	+	0	NA	intron (NM_001286974, intron 2 of 18)	MLT1F2|LTR|ERVL-MaLR	18699	NM_001286974	8727		NM_003798	ENSG00000119326	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin alpha like 1	protein-coding
202702	chr6	158813901	158814750	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-3654	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
166404	chr3	113577751	113578380	+	0	NA	intron (NR_136284, intron 4 of 21)	intron (NR_136284, intron 4 of 21)	-16811	NR_039648	100616476		NR_039648	ENSG00000265253	MIR4446	mir-4446	microRNA 4446	ncRNA
60344	chr13	40786771	40787530	+	0	NA	Intergenic	LTR8|LTR|ERV1	-2461	NM_014252	10166		NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|LNC-HC|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
212425	chr7	128318901	128319100	+	0	NA	intron (NM_018077, intron 14 of 18)	intron (NM_018077, intron 14 of 18)	24908	NM_001166135	55131		NM_018077	ENSG00000106344	RBM28	ANES|NOP4	RNA binding motif protein 28	protein-coding
98045	chr17	45436851	45437100	+	0	NA	non-coding (NR_027782, exon 11 of 11)	non-coding (NR_027782, exon 11 of 11)	-4105	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
171139	chr3	195549761	195552050	+	0	NA	Intergenic	Intergenic	-7580	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
120766	chr19	45428701	45429380	+	0	NA	intron (NM_001369412, intron 1 of 9)	intron (NM_001369412, intron 1 of 9)	-5123	NM_001369408	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
170806	chr3	189171851	189172150	+	0	NA	promoter-TSS (NM_198485)	promoter-TSS (NM_198485)	29	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
139377	chr2	221568651	221568950	+	0	NA	intron (NM_004438, intron 1 of 17)	intron (NM_004438, intron 1 of 17)	3504	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
119241	chr19	39478451	39479250	+	0	NA	Intergenic	Intergenic	-1988	NM_001329559	92609		NM_001001563	ENSG00000105197	TIMM50	MGCA9|TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
68678	chr14	90329751	90330050	+	0	NA	intron (NM_017970, intron 1 of 13)	intron (NM_017970, intron 1 of 13)	2041	NM_017970	55051		NM_017970	ENSG00000119720	NRDE2	C14orf102	NRDE-2, necessary for RNA interference, domain containing	protein-coding
209379	chr7	76305801	76306080	+	0	NA	Intergenic	Intergenic	3267	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
131228	chr2	95192901	95193280	+	0	NA	Intergenic	LTR13|LTR|ERVK	27281	NM_001282398	7549		NM_021088	ENSG00000275111	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
92881	chr17	16430451	16430750	+	0	NA	intron (NM_016113, intron 10 of 14)	AluSx3|SINE|Alu	-8387	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
101582	chr17	68069901	68070100	+	0	NA	Intergenic	LTR6A|LTR|ERV1	-31555	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
122836	chr19	50430101	50430500	+	0	NA	3' UTR (NM_001243999, exon 6 of 6)	3' UTR (NM_001243999, exon 6 of 6)	-2592	NM_004533	4606		NM_004533	ENSG00000086967	MYBPC2	MYBPC|MYBPCF|fsMyBP-C	myosin binding protein C2	protein-coding
192365	chr6	24695571	24696000	+	0	NA	intron (NM_001160094, intron 2 of 3)	AluSx|SINE|Alu	23369	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
33484	chr10	119085371	119086250	+	0	NA	Intergenic	MER58C|DNA|hAT-Charlie	-4993	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
9981	chr1	54994151	54994450	+	0	NA	Intergenic	Intergenic	-4633	NM_057176	7809		NM_057176	ENSG00000162399	BSND	BART|DFNB73	barttin CLCNK type accessory subunit beta	protein-coding
207935	chr7	50792601	50793750	+	0	NA	promoter-TSS (NM_001350816)	promoter-TSS (NM_001350816)	278	NM_001001555	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
24266	chr1	236406121	236406380	+	0	NA	intron (NM_080738, intron 1 of 5)	intron (NM_080738, intron 1 of 5)	10837	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
236649	chrX	75273601	75275000	+	0	NA	exon (NM_001307944, exon 1 of 7)	exon (NM_001307944, exon 1 of 7)	215	NM_145052	139596		NM_145052	ENSG00000094841	UPRT	FUR1|UPP	uracil phosphoribosyltransferase homolog	protein-coding
106647	chr18	22929371	22929630	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-3828	NM_002894	5932		NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JAWAD|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding
94591	chr17	29722301	29723200	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	38682	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
36963	chr11	11246651	11247150	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	106350	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
92188	chr17	7831301	7831780	+	0	NA	exon (NM_020877, exon 81 of 86)	exon (NM_020877, exon 81 of 86)	-8366	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
122511	chr19	49594951	49595430	+	0	NA	exon (NM_020719, exon 4 of 14)	exon (NM_020719, exon 4 of 14)	4008	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
108512	chr18	74204421	74205080	+	0	NA	Intergenic	Intergenic	56227	NM_014177	29090		NM_014177	ENSG00000075336	TIMM21	C18orf55|HSPC154|TIM21	translocase of inner mitochondrial membrane 21	protein-coding
164706	chr3	67704371	67704530	+	0	NA	intron (NR_109992, intron 3 of 6)	intron (NR_109992, intron 3 of 6)	49753	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
127442	chr2	42179621	42179880	+	0	NA	intron (NM_019063, intron 1 of 22)	AluSz|SINE|Alu	-9519	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226372	chr9	70260871	70261030	+	0	NA	intron (NM_015110, intron 1 of 24)	AluJb|SINE|Alu	1972	NM_015110	23137		NM_015110	ENSG00000198887	SMC5	ATELS2|SMC5L1	structural maintenance of chromosomes 5	protein-coding
190063	chr5	177599051	177600930	+	0	NA	promoter-TSS (NM_007255)	promoter-TSS (NM_007255)	-142	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
115524	chr19	15444921	15445180	+	0	NA	intron (NM_001371589, intron 2 of 12)	intron (NM_001371589, intron 2 of 12)	-4498	NR_031716	100302127		NR_031716	ENSG00000269782	MIR1470	MIRN1470|hsa-mir-1470	microRNA 1470	ncRNA
186477	chr5	138035771	138036380	+	0	NA	intron (NR_037900, intron 1 of 1)	intron (NR_037900, intron 1 of 1)	-2962	NM_001101800	51306		NM_016603	ENSG00000031003	FAM13B	ARHGAP49|C5orf5|FAM13B1|KHCHP|N61	family with sequence similarity 13 member B	protein-coding
211202	chr7	102615811	102618100	+	0	NA	promoter-TSS (NM_006989)	promoter-TSS (NM_006989)	-197	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
203363	chr6	170378371	170379200	+	0	NA	intron (NM_032448, intron 6 of 10)	intron (NM_032448, intron 6 of 10)	48024	NR_039787	100616430		NR_039787	ENSG00000266245	MIR4644	-	microRNA 4644	ncRNA
132253	chr2	102520001	102520250	+	0	NA	intron (NM_001011552, intron 9 of 11)	intron (NM_001011552, intron 9 of 11)	46899	NM_001011552	389015		NM_001011552	ENSG00000180251	SLC9A4	NHE4	solute carrier family 9 member A4	protein-coding
121564	chr19	47263901	47264100	+	0	NA	intron (NM_015603, intron 5 of 11)	AluSx1|SINE|Alu	7475	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
183419	chr5	78293171	78293480	+	0	NA	intron (NM_003664, intron 1 of 26)	intron (NM_003664, intron 1 of 26)	1373	NM_003664	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
17434	chr1	156667421	156667680	+	0	NA	Intergenic	Intergenic	9857	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
21312	chr1	204510601	204510800	+	0	NA	Intergenic	L1M5|LINE|L1	-5679	NM_001204172	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
122497	chr19	49577321	49577780	+	0	NA	intron (NM_001363649, intron 1 of 9)	AluSc|SINE|Alu	3006	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
148999	chr21	14481901	14482900	+	0	NA	Intergenic	Intergenic	63915	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
93147	chr17	17748721	17749050	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	17417	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
218653	chr8	57212201	57212600	+	0	NA	Intergenic	CpG	-5876	NR_038235	100507651		NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
92723	chr17	14294771	14294930	+	0	NA	Intergenic	AluSc|SINE|Alu	-6231	NR_130138	9953		NM_006041	ENSG00000125430	HS3ST3B1	3-OST-3B|3OST3B1|h3-OST-3B	heparan sulfate-glucosamine 3-sulfotransferase 3B1	protein-coding
68367	chr14	77740821	77741280	+	0	NA	intron (NM_001318844, intron 3 of 12)	AluSq2|SINE|Alu	-19718	NR_161324	283579		NM_174943	ENSG00000197734	C14orf178	-	chromosome 14 open reading frame 178	ncRNA
39304	chr11	58621771	58622330	+	0	NA	promoter-TSS (NM_000614)	promoter-TSS (NM_000614)	-615	NM_000614	1270		NM_000614	ENSG00000242689	CNTF	HCNTF	ciliary neurotrophic factor	protein-coding
134557	chr2	144180871	144181200	+	0	NA	intron (NM_001354351, intron 7 of 15)	intron (NM_001354351, intron 7 of 15)	56304	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
94262	chr17	28694821	28695400	+	0	NA	intron (NM_003170, intron 28 of 36)	intron (NM_003170, intron 28 of 36)	14994	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
194438	chr6	33148121	33148530	+	0	NA	non-coding (NR_138084, exon 3 of 3)	non-coding (NR_138084, exon 3 of 3)	5001	NR_138084	414768		NR_138084		HCG24	-	HLA complex group 24	ncRNA
204559	chr7	5143811	5144880	+	0	NA	non-coding (NR_034163, exon 1 of 6)	non-coding (NR_034163, exon 1 of 6)	201	NR_034163	645700		NR_034163	ENSG00000291037	ZNF890P	-	zinc finger protein 890, pseudogene	pseudo
110444	chr19	1984471	1984830	+	0	NA	TTS (NM_017797)	TTS (NM_017797)	-30101	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
34361	chr10	132227171	132227530	+	0	NA	intron (NM_173575, intron 3 of 11)	MIRb|SINE|MIR	21758	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
86846	chr16	67927301	67927830	+	0	NA	exon (NM_006742, exon 3 of 3)	exon (NM_006742, exon 3 of 3)	4297	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
125899	chr2	24765671	24766030	+	0	NA	intron (NM_147233, intron 20 of 20)	intron (NM_147233, intron 20 of 20)	-27265	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
215988	chr8	8870401	8871400	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	22730	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
21588	chr1	206502851	206503150	+	0	NA	Intergenic	Intergenic	-4531	NM_182664	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
54336	chr12	89667101	89667380	+	0	NA	intron (NM_001366524, intron 1 of 21)	intron (NM_001366524, intron 1 of 21)	41598	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
17252	chr1	156367901	156368330	+	0	NA	Intergenic	Intergenic	-1096	NM_020407	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
218903	chr8	60700521	60700800	+	0	NA	intron (NM_017780, intron 1 of 37)	intron (NM_017780, intron 1 of 37)	21920	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
117282	chr19	19476901	19477280	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	38458	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
177615	chr4	121153721	121154550	+	0	NA	intron (NM_001128843, intron 8 of 12)	intron (NM_001128843, intron 8 of 12)	10186	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
192607	chr6	26026801	26028080	+	0	NA	promoter-TSS (NM_003544)	promoter-TSS (NM_003544)	-157	NM_003544	8366		NM_003544	ENSG00000278705	H4C2	H4-16|H4/I|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4FI|HIST1H4B	H4 clustered histone 2	protein-coding
7751	chr1	36163671	36163830	+	0	NA	intron (NM_001286365, intron 1 of 15)	intron (NM_001286365, intron 1 of 15)	7590	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
59829	chr13	30431351	30431650	+	0	NA	Intergenic	Intergenic	9007	NM_001355247	171222		NM_001355247	ENSG00000236444	UBE2L5	UBCH7N2|UBE2L5P	ubiquitin conjugating enzyme E2 L5	protein-coding
20553	chr1	198709851	198709950	+	0	NA	intron (NM_002838, intron 11 of 32)	intron (NM_002838, intron 11 of 32)	70860	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
100262	chr17	59560201	59560400	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5310	NM_001166301	79665		NM_024612	ENSG00000108406	DHX40	ARG147|DDX40|PAD	DEAH-box helicase 40	protein-coding
146987	chr20	53208351	53208840	+	0	NA	intron (NM_001193421, intron 1 of 2)	MIR|SINE|MIR	23312	NM_001193421	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
110050	chr19	1475751	1476130	+	0	NA	intron (NM_152482, intron 2 of 2)	intron (NM_152482, intron 2 of 2)	3275	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
200551	chr6	136267601	136268180	+	0	NA	intron (NM_001301038, intron 10 of 12)	intron (NM_001301038, intron 10 of 12)	-17579	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
103134	chr17	77393921	77394400	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	2894	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
82384	chr16	16075771	16076130	+	0	NA	intron (NM_004996, intron 14 of 30)	intron (NM_004996, intron 14 of 30)	126334	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
158358	chr22	50464621	50465150	+	0	NA	exon (NM_001365819, exon 13 of 40)	exon (NM_001365819, exon 13 of 40)	10150	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
46222	chr11	124075921	124076480	+	0	NA	Intergenic	MER52D|LTR|ERV1	-37199	NM_001004463	390265		NM_001004463	ENSG00000182634	OR10G7	OR11-283	olfactory receptor family 10 subfamily G member 7	protein-coding
222206	chr8	133054751	133055500	+	0	NA	non-coding (NR_146773, exon 1 of 1)	non-coding (NR_146773, exon 1 of 1)	166	NR_146773	100302522		NR_146773	ENSG00000287736	PTCSC1	NCRNA00197|PTCSC	papillary thyroid carcinoma susceptibility candidate 1	ncRNA
157993	chr22	49855271	49856400	+	0	NA	intron (NM_014838, intron 1 of 1)	intron (NM_014838, intron 1 of 1)	1991	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
160114	chr3	19949721	19950430	+	0	NA	intron (NM_004162, intron 1 of 5)	intron (NM_004162, intron 1 of 5)	2978	NM_004162	5868		NM_004162	ENSG00000144566	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
117913	chr19	32970171	32970330	+	0	NA	intron (NM_032816, intron 1 of 18)	intron (NM_032816, intron 1 of 18)	1708	NM_032816	84902		NM_032816	ENSG00000121289	CEP89	CCDC123|CEP123	centrosomal protein 89	protein-coding
120330	chr19	43533701	43535130	+	0	NA	5' UTR (NM_174945, exon 3 of 4)	5' UTR (NM_174945, exon 3 of 4)	1227	NM_174945	284346		NM_174945	ENSG00000176472	ZNF575	-	zinc finger protein 575	protein-coding
68169	chr14	75979271	75979850	+	0	NA	intron (NM_001329939, intron 2 of 7)	intron (NM_001329939, intron 2 of 7)	2435	NM_003239	7043		NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
215576	chr7	158827121	158827970	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	1964	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
17772	chr1	159067851	159068950	+	0	NA	intron (NM_004833, intron 3 of 5)	L2c|LINE|L2	8366	NM_004833	9447		NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding
172300	chr4	1576671	1577680	+	0	NA	Intergenic	Intergenic	106816	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
192957	chr6	27829151	27829650	+	0	NA	Intergenic	Intergenic	2160	NM_003541	8362		NM_003541	ENSG00000273542	H4C12	H4-16|H4/d|H4C1|H4C11|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2iii|H4FD|HIST1H4K|dJ160A22.1	H4 clustered histone 12	protein-coding
129481	chr2	69597821	69598080	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	45788	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
93349	chr17	18223801	18224400	+	0	NA	Intergenic	AluJb|SINE|Alu	-1535	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
177488	chr4	113959171	113959330	+	0	NA	intron (NM_001354211, intron 4 of 6)	intron (NM_001354211, intron 4 of 6)	20397	NM_001354210	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
43688	chr11	85826151	85826730	+	0	NA	Intergenic	Intergenic	-15281	NM_001289608	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
230964	chr9	129456121	129456380	+	0	NA	Intergenic	Intergenic	-32410	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
220087	chr8	94234501	94234980	+	0	NA	Intergenic	Intergenic	-17462	NM_001144663	1015		NM_004063	ENSG00000079112	CDH17	CDH16|HPT-1|HPT1	cadherin 17	protein-coding
166096	chr3	109806321	109807650	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	204157	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
69984	chr14	99968201	99968400	+	0	NA	Intergenic	L2b|LINE|L2	-3122	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
149262	chr21	26070021	26070280	+	0	NA	intron (NM_001385253, intron 3 of 16)	intron (NM_001385253, intron 3 of 16)	70240	NM_001136016	351		NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|alpha-sAPP|preA4	amyloid beta precursor protein	protein-coding
139871	chr2	230654021	230655250	+	0	NA	Intergenic	MER51B|LTR|ERV1	45894	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
48249	chr12	8405951	8406050	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-15248	NR_024420	389634		NM_001012988	ENSG00000226091	LINC00937	-	long intergenic non-protein coding RNA 937	ncRNA
9207	chr1	45620321	45620930	+	0	NA	intron (NM_001114938, intron 12 of 12)	MIR|SINE|MIR	3429	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
165695	chr3	101987851	101988330	+	0	NA	intron (NR_026934, intron 2 of 3)	intron (NR_026934, intron 2 of 3)	47231	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
120284	chr19	43441121	43441380	+	0	NA	Intergenic	AluJb|SINE|Alu	24358	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
42647	chr11	72432421	72432680	+	0	NA	intron (NM_001258394, intron 1 of 17)	intron (NM_001258394, intron 1 of 17)	1981	NM_030813	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
207502	chr7	44759301	44759500	+	0	NA	exon (NM_031449, exon 7 of 19)	exon (NM_031449, exon 7 of 19)	3212	NM_174929	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
119823	chr19	41355901	41356550	+	0	NA	intron (NM_030578, intron 3 of 3)	L2a|LINE|L2	-2303	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
167385	chr3	128807421	128807680	+	0	NA	exon (NM_004637, exon 5 of 6)	exon (NM_004637, exon 5 of 6)	-39258	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
198166	chr6	95572251	95572500	+	0	NA	intron (NR_104136, intron 1 of 2)	intron (NR_104136, intron 1 of 2)	5076	NR_047502	101927288		NR_047502	ENSG00000261366	MANEA-DT	MANEA-AS1	MANEA divergent transcript	ncRNA
61013	chr13	48126651	48127580	+	0	NA	Intergenic	Intergenic	-31974	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
179718	chr5	56971	57200	+	0	NA	Intergenic	L2b|LINE|L2	-35083	NM_052909	153478		NM_052909	ENSG00000153404	PLEKHG4B	ARHGEF48	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
111832	chr19	4530021	4530280	+	0	NA	intron (NM_001013706, intron 3 of 7)	intron (NM_001013706, intron 3 of 7)	5074	NM_001013706	440503		NM_001013706	ENSG00000214456	PLIN5	LSDA5|LSDP5|MLDP|OXPAT	perilipin 5	protein-coding
71217	chr14	105151601	105151800	+	0	NA	promoter-TSS (NR_106823)	promoter-TSS (NR_106823)	-836	NR_106823	102465458		NR_106823	ENSG00000273778	MIR6765	hsa-mir-6765	microRNA 6765	ncRNA
127711	chr2	43240501	43240700	+	0	NA	intron (NR_144316, intron 35 of 36)	intron (NR_144316, intron 35 of 36)	13389	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
31427	chr10	95756301	95757200	+	0	NA	intron (NR_038444, intron 5 of 5)	intron (NR_038444, intron 5 of 5)	587	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
173028	chr4	4763051	4763450	+	0	NA	intron (NR_125892, intron 1 of 2)	intron (NR_125892, intron 1 of 2)	1490	NR_125892	101928279		NR_125892		LOC101928279	-	uncharacterized LOC101928279	ncRNA
46714	chr11	128860771	128860930	+	0	NA	intron (NM_153766, intron 1 of 2)	MIRc|SINE|MIR	6446	NM_153765	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
13930	chr1	120149901	120150100	+	0	NA	TTS (NM_004892)	TTS (NM_004892)	26520	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
70845	chr14	103699071	103699630	+	0	NA	intron (NM_001371232, intron 8 of 9)	intron (NM_001371232, intron 8 of 9)	16101	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
194361	chr6	32964521	32965530	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-3569	NM_005104	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
46675	chr11	128730201	128730430	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-34292	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
52549	chr12	56138821	56139600	+	0	NA	intron (NM_015292, intron 24 of 30)	AluSx1|SINE|Alu	10943	NM_015292	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
124515	chr2	46021	47480	+	0	NA	promoter-TSS (NM_001077710)	promoter-TSS (NM_001077710)	-245	NM_001077710	642273		NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
217312	chr8	27404221	27404580	+	0	NA	intron (NM_173174, intron 7 of 35)	intron (NM_173174, intron 7 of 35)	-28970	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
214421	chr7	149839671	149840080	+	0	NA	intron (NM_001099220, intron 1 of 7)	intron (NM_001099220, intron 1 of 7)	1500	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
233786	chrX	1438051	1438430	+	0	NA	intron (NM_001173474, intron 2 of 11).2	AluSx1|SINE|Alu	14669	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
44256	chr11	101914701	101915780	+	0	NA	5' UTR (NM_001363543, exon 1 of 12)	5' UTR (NM_001363543, exon 1 of 12)	230	NM_001363543	57562		NM_020802	ENSG00000110318	CEP126	KIAA1377	centrosomal protein 126	protein-coding
58381	chr12	131829121	131829600	+	0	NA	intron (NM_016155, intron 1 of 9)	CpG	967	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
87219	chr16	69521121	69521380	+	0	NA	Intergenic	Intergenic	44618	NR_031719	100302119		NR_031719	ENSG00000223109	MIR1538	MIRN1538|hsa-mir-1538	microRNA 1538	ncRNA
198198	chr6	96922701	96922930	+	0	NA	intron (NM_001323258, intron 2 of 7)	intron (NM_001323258, intron 2 of 7)	-1805	NR_136580	114792		NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
22202	chr1	212455771	212456480	+	0	NA	Intergenic	Intergenic	23205	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
227185	chr9	87923001	87923250	+	0	NA	exon (NM_001145124, exon 4 of 4)	exon (NM_001145124, exon 4 of 4)	5163	NM_001145124	441452		NM_001145124	ENSG00000230246	SPATA31C1	FAM75C1|SPATA31C2	SPATA31 subfamily C member 1	protein-coding
234473	chrX	17803621	17803700	+	0	NA	intron (NM_021785, intron 1 of 1)	intron (NM_021785, intron 1 of 1)	57167	NR_033348	10742		NM_021785	ENSG00000131831	RAI2	-	retinoic acid induced 2	protein-coding
235075	chrX	40172501	40173400	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	4327	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
145259	chr20	39081151	39081530	+	0	NA	Intergenic	Intergenic	118996	NR_033905	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
160636	chr3	31550451	31551150	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	17875	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
220314	chr8	98824371	98824530	+	0	NA	intron (NM_001256312, intron 3 of 12)	intron (NM_001256312, intron 3 of 12)	1221	NM_001256313	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
79626	chr16	1113751	1114080	+	0	NA	Intergenic	Intergenic	-17671	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
224883	chr9	32344601	32344800	+	0	NA	Intergenic	Intergenic	-39903	NM_001278352	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
236676	chrX	76464871	76465030	+	0	NA	Intergenic	L1PB1|LINE|L1	37240	NM_020932	57692		NM_020932	ENSG00000198934	MAGEE1	DAMAGE|HCA1	MAGE family member E1	protein-coding
203110	chr6	166540851	166541520	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	3505	NM_001318938	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
18640	chr1	166875501	166877230	+	0	NA	promoter-TSS (NM_053053)	promoter-TSS (NM_053053)	-101	NM_053053	117143		NM_053053	ENSG00000152382	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
63120	chr13	113363921	113364950	+	0	NA	promoter-TSS (NM_001286733)	promoter-TSS (NM_001286733)	-287	NM_001286733	79774		NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
136170	chr2	174394401	174394680	+	0	NA	intron (NM_004882, intron 1 of 9)	MIR3|SINE|MIR	1172	NM_004882	9541		NM_004882	ENSG00000138433	CIR1	CIR	corepressor interacting with RBPJ, CIR1	protein-coding
161533	chr3	42612201	42612700	+	0	NA	intron (NR_125400, intron 2 of 2)	intron (NR_125400, intron 2 of 2)	-11372	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
103616	chr17	78731401	78732800	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	4802	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
29884	chr10	72941371	72942130	+	0	NA	intron (NM_001318125, intron 1 of 2)	intron (NM_001318125, intron 1 of 2)	13056	NM_032562	84647		NM_032562	ENSG00000138308	PLA2G12B	FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB	phospholipase A2 group XIIB	protein-coding
148670	chr21	6129821	6130430	+	0	NA	Intergenic	L1ME1|LINE|L1	18994	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
158671	chr3	5126721	5127050	+	0	NA	intron (NM_018184, intron 1 of 6)	intron (NM_018184, intron 1 of 6)	4593	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
37980	chr11	34997971	34998630	+	0	NA	Intergenic	Intergenic	56463	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
92206	chr17	7853971	7854350	+	0	NA	promoter-TSS (NM_001319941)	promoter-TSS (NM_001319941)	-906	NM_203411	92162		NM_203411	ENSG00000167874	TMEM88	-	transmembrane protein 88	protein-coding
169522	chr3	170109721	170110180	+	0	NA	intron (NM_001308116, intron 11 of 14)	intron (NM_001308116, intron 11 of 14)	71783	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
6636	chr1	28926621	28927430	+	0	NA	intron (NM_001376013, intron 1 of 20)	intron (NM_001376013, intron 1 of 20)	12449	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
77743	chr15	85745471	85745630	+	0	NA	3' UTR (NM_001270546, exon 29 of 29)	3' UTR (NM_001270546, exon 29 of 29)	13175	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
209346	chr7	76261501	76262400	+	0	NA	intron (NM_001291831, intron 8 of 15)	intron (NM_001291831, intron 8 of 15)	-40723	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
166068	chr3	108834731	108836330	+	0	NA	intron (NM_016388, intron 2 of 5)	intron (NM_016388, intron 2 of 5)	12744	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
81072	chr16	4337321	4337580	+	0	NA	exon (NM_032575, exon 7 of 7).2	exon (NM_032575, exon 7 of 7).2	-9110	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
24480	chr1	244233971	244234330	+	0	NA	Intergenic	Intergenic	-118485	NM_001276348	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
32976	chr10	110502951	110503330	+	0	NA	intron (NM_004419, intron 2 of 3)	intron (NM_004419, intron 2 of 3)	5233	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
72109	chr15	28941121	28942700	+	0	NA	intron (NM_001353793, intron 1 of 12).2	AluY|SINE|Alu	7906	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
171267	chr3	195869101	195869300	+	0	NA	intron (NM_005781, intron 11 of 14)	intron (NM_005781, intron 11 of 14)	-8796	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
182999	chr5	72299921	72300180	+	0	NA	intron (NM_001286751, intron 2 of 10)	L2|LINE|L2	20190	NM_001286751	23107		NM_015084	ENSG00000113048	MRPS27	MRP-S27|S27mt|mS27	mitochondrial ribosomal protein S27	protein-coding
54306	chr12	89467571	89467730	+	0	NA	exon (NM_001199777, exon 7 of 11)	exon (NM_001199777, exon 7 of 11)	57146	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
239274	chrY	13702171	13702330	+	0	NA	Intergenic	Intergenic	-1649	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
178786	chr4	153477121	153477380	+	0	NA	intron (NM_015196, intron 3 of 34)	L2b|LINE|L2	10890	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
147671	chr20	62299351	62300050	+	0	NA	Intergenic	Intergenic	-3196	NM_001281437	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
126979	chr2	36358901	36359330	+	0	NA	intron (NM_016441, intron 1 of 16)	intron (NM_016441, intron 1 of 16)	3337	NM_016441	51232		NM_016441	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1	protein-coding
108248	chr18	63224271	63224950	+	0	NA	intron (NM_000633, intron 2 of 2)	HAL1|LINE|L1	95159	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
39334	chr11	59182321	59182650	+	0	NA	intron (NM_015177, intron 2 of 8)	intron (NM_015177, intron 2 of 8)	10353	NM_015177	23220		NM_015177	ENSG00000110042	DTX4	RNF155	deltex E3 ubiquitin ligase 4	protein-coding
51942	chr12	53739601	53740350	+	0	NA	Intergenic	(GGGGCG)n|Simple_repeat|Simple_repeat	11860	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
123917	chr19	55356821	55357430	+	0	NA	intron (NM_001145402, intron 9 of 10)	L1MB5|LINE|L1	-2406	NM_001369799	125965		NM_144613	ENSG00000160471	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit 6B2	protein-coding
220881	chr8	103499401	103500000	+	0	NA	promoter-TSS (NR_145710)	promoter-TSS (NR_145710)	-469	NR_145705	105375690		NR_145697		LOC105375690	-	uncharacterized LOC105375690	ncRNA
171716	chr3	197912571	197913430	+	0	NA	TTS (NM_001323030)	TTS (NM_001323030)	36925	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
83477	chr16	27389451	27389550	+	0	NA	Intergenic	Intergenic	-12674	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
141127	chr2	239098171	239098530	+	0	NA	intron (NM_006037, intron 16 of 26)	intron (NM_006037, intron 16 of 26)	-12424	NR_039643	100616493		NR_039643	ENSG00000264810	MIR4441	-	microRNA 4441	ncRNA
99451	chr17	50138571	50138730	+	0	NA	intron (NM_032595, intron 7 of 9)	AluJb|SINE|Alu	-8490	NM_174920	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
130255	chr2	84854501	84854700	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	26484	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
157670	chr22	46280001	46280280	+	0	NA	intron (NM_017931, intron 6 of 13)	intron (NM_017931, intron 6 of 13)	12132	NM_017931	55020		NM_017931	ENSG00000075234	TTC38	LL22NC03-5H6.5	tetratricopeptide repeat domain 38	protein-coding
17404	chr1	156629821	156630280	+	0	NA	Intergenic	AluSz|SINE|Alu	-8122	NR_135113	101928177		NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
66527	chr14	61750801	61751880	+	0	NA	promoter-TSS (NR_144368)	promoter-TSS (NR_144368)	-243	NR_144368	105370526		NR_144368	ENSG00000258667	HIF1A-AS3	HIFAL	HIF1A antisense RNA 3	ncRNA
91725	chr17	6648201	6648850	+	0	NA	intron (NM_016060, intron 3 of 3)	MER102b|DNA|hAT-Charlie	3080	NM_016060	51003		NM_016060	ENSG00000108590	MED31	3110004H13Rik|CGI-125|SEP10|Soh1	mediator complex subunit 31	protein-coding
98862	chr17	48491601	48491880	+	0	NA	Intergenic	MER41B|LTR|ERV1	39271	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
203063	chr6	166253951	166254050	+	0	NA	intron (NR_125862, intron 2 of 4)	CpG	17031	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
228633	chr9	105859701	105859900	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	165259	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
89797	chr16	89504921	89506030	+	0	NA	Intergenic	Intergenic	-2913	NM_001363850	6687		NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7 matrix AAA peptidase subunit, paraplegin	protein-coding
41666	chr11	66580201	66580400	+	0	NA	Intergenic	AluSx3|SINE|Alu	-11694	NM_003793	8722		NM_003793	ENSG00000174080	CTSF	CATSF|CLN13	cathepsin F	protein-coding
109972	chr19	1396001	1396200	+	0	NA	TTS (NM_024407)	TTS (NM_024407)	5442	NM_138924	2593		NM_000156	ENSG00000130005	GAMT	CCDS2|HEL-S-20|PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
215543	chr7	158789521	158790480	+	0	NA	intron (NM_020728, intron 4 of 21)	intron (NM_020728, intron 4 of 21)	39509	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
82492	chr16	17366071	17366230	+	0	NA	intron (NM_022166, intron 1 of 11)	Charlie8|DNA|hAT-Charlie	104810	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
190363	chr5	179734521	179735450	+	0	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	2163	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
112856	chr19	7550671	7551550	+	0	NA	intron (NM_006702, intron 20 of 34)	CpG-13551	15393	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
226072	chr9	61874901	61875100	+	0	NA	Intergenic	CpG	-5862	NR_121606	102723709		NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
49585	chr12	27020871	27021030	+	0	NA	Intergenic	Intergenic	-1572	NM_001271811	9412		NM_004264	ENSG00000152944	MED21	SRB7|SURB7|hSrb7	mediator complex subunit 21	protein-coding
185936	chr5	132941351	132941650	+	0	NA	intron (NM_014423, intron 1 of 20)	AluSz6|SINE|Alu	22134	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
2392	chr1	9495021	9495680	+	0	NA	Intergenic	CpG	-44115	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
187244	chr5	141387551	141387880	+	0	NA	promoter-TSS (NM_003736)	promoter-TSS (NM_003736)	17	NM_003736	8641		NM_003736	ENSG00000253953	PCDHGB4	CDH20|FIB2|PCDH-GAMMA-B4	protocadherin gamma subfamily B, 4	protein-coding
192065	chr6	16620901	16621330	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	139069	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
228734	chr9	109411821	109412100	+	0	NA	intron (NM_001145369, intron 9 of 20)	intron (NM_001145369, intron 9 of 20)	5823	NR_026918	5774		NM_002829	ENSG00000070159	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase non-receptor type 3	protein-coding
166431	chr3	113783571	113784030	+	0	NA	intron (NM_001690, intron 3 of 14)	MER119|DNA|hAT-Charlie	36765	NM_001690	523		NM_001690	ENSG00000114573	ATP6V1A	ARCL2D|ATP6A1|ATP6V1A1|DEE93|HO68|IECEE3|VA68|VPP2|Vma1	ATPase H+ transporting V1 subunit A	protein-coding
170514	chr3	186515051	186515550	+	0	NA	Intergenic	LTR32|LTR|ERVL	-21639	NR_033844	253573		NR_033844	ENSG00000224406	LINC02052	-	long intergenic non-protein coding RNA 2052	ncRNA
69875	chr14	99288871	99289230	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-16853	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
210423	chr7	100080351	100080450	+	0	NA	intron (NM_001371211, intron 1 of 5)	AluJo|SINE|Alu	1323	NM_001371216	7551		NM_017715	ENSG00000166526	ZNF3	A8-51|HF.12|KOX25|PP838|Zfp113	zinc finger protein 3	protein-coding
42464	chr11	69642221	69643950	+	0	NA	exon (NM_053056, exon 2 of 5)	exon (NM_053056, exon 2 of 5)	1929	NM_053056	595		NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
209079	chr7	74800471	74800630	+	0	NA	intron (NM_173537, intron 15 of 15)	intron (NM_173537, intron 15 of 15)	26588	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
139077	chr2	218865851	218866250	+	0	NA	intron (NM_006522, intron 1 of 3)	(GACAG)n|Simple_repeat|Simple_repeat	6245	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
206727	chr7	36605671	36606030	+	0	NA	intron (NM_001177506, intron 11 of 21)	intron (NM_001177506, intron 11 of 21)	-5730	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
230471	chr9	128213821	128214280	+	0	NA	intron (NM_001374269, intron 1 of 21)	intron (NM_001374269, intron 1 of 21)	-9828	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
136729	chr2	181223201	181223850	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	82127	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
7655	chr1	35639601	35640000	+	0	NA	intron (NM_001199779, intron 1 of 5)	intron (NM_001199779, intron 1 of 5)	1726	NM_001199779	5690		NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome 20S subunit beta 2	protein-coding
28866	chr10	62689301	62690190	+	0	NA	Intergenic	Intergenic	-114975	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
63701	chr14	21101871	21102600	+	0	NA	intron (NM_001146683, intron 5 of 7)	intron (NM_001146683, intron 5 of 7)	2469	NM_001102454	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
32179	chr10	101573471	101573830	+	0	NA	Intergenic	Intergenic	14607	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
72906	chr15	40345871	40346930	+	0	NA	Intergenic	Intergenic	-4633	NM_001145643	644844		NM_001145643	ENSG00000233041	PHGR1	-	proline, histidine and glycine rich 1	protein-coding
140972	chr2	237946751	237946850	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-20145	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
181275	chr5	39271971	39272550	+	0	NA	Intergenic	Intergenic	-1611	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
179297	chr4	177323651	177324250	+	0	NA	intron (NM_018248, intron 2 of 9)	intron (NM_018248, intron 2 of 9)	14076	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
10440	chr1	66247461	66248230	+	0	NA	intron (NM_001037340, intron 2 of 14)	intron (NM_001037340, intron 2 of 14)	-84263	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
54937	chr12	96213921	96214180	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	19675	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
29975	chr10	73732721	73733180	+	0	NA	Intergenic	CpG	2388	NR_048575	2749		NR_048575	ENSG00000291043	GLUD1P3	C10orf102|GLUDP3	glutamate dehydrogenase 1 pseudogene 3	pseudo
236643	chrX	74940421	74940680	+	0	NA	Intergenic	L1PA15|LINE|L1	-15098	NM_001008537	340533		NM_001008537	ENSG00000050030	NEXMIF	KIAA2022|KIDLIA|MRX98|XLID98|XPN	neurite extension and migration factor	protein-coding
102054	chr17	74876701	74877100	+	0	NA	TTS (NM_178128)	TTS (NM_178128)	-3906	NM_001258013	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
222500	chr8	140496251	140496550	+	0	NA	Intergenic	L1ME1|LINE|L1	-14922	NM_017444	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
118002	chr19	33976551	33976650	+	0	NA	Intergenic	Intergenic	179730	NM_001129994	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
121780	chr19	47776851	47777150	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1703	NM_003009	6415		NM_003009	ENSG00000178980	SELENOW	SEPW1|selW	selenoprotein W	protein-coding
68966	chr14	91421101	91421500	+	0	NA	Intergenic	Intergenic	-3480	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
190069	chr5	177611751	177611850	+	0	NA	Intergenic	Intergenic	11668	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
179122	chr4	168917451	168917750	+	0	NA	intron (NM_001166108, intron 17 of 21)	intron (NM_001166108, intron 17 of 21)	85505	NM_001367570	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
215270	chr7	157008171	157008330	+	0	NA	intron (NM_005515, intron 1 of 2)	intron (NM_005515, intron 1 of 2)	1185	NM_001165255	3110		NM_005515	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
33022	chr10	110746351	110746830	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	102254	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
201348	chr6	144582871	144583620	+	0	NA	promoter-TSS (NM_001375323)	promoter-TSS (NM_001375323)	97	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
171133	chr3	195542301	195545080	+	0	NA	promoter-TSS (NR_133014)	promoter-TSS (NR_133014)	-365	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
211757	chr7	107199321	107199630	+	0	NA	intron (NM_001244262, intron 9 of 10).2	intron (NM_001244262, intron 9 of 10).2	30472	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
174285	chr4	38325701	38326300	+	0	NA	Intergenic	Intergenic	-40914	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
114612	chr19	12968371	12968900	+	0	NA	promoter-TSS (NM_152654)	promoter-TSS (NM_152654)	-983	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
154692	chr22	36382921	36383760	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	4627	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
39653	chr11	61585971	61586330	+	0	NA	Intergenic	Intergenic	-2344	NR_110189	101927495		NR_110189	ENSG00000250230	LOC101927495	-	uncharacterized LOC101927495	ncRNA
209373	chr7	76299951	76300050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2673	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
6382	chr1	27885251	27885780	+	0	NA	intron (NM_001039477, intron 3 of 3)	intron (NM_001039477, intron 3 of 3)	12971	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
50814	chr12	49089751	49090550	+	0	NA	exon (NM_021044, exon 3 of 3)	exon (NM_021044, exon 3 of 3)	4651	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
128710	chr2	61689571	61689730	+	0	NA	Intergenic	AluJb|SINE|Alu	-151294	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
204553	chr7	5085321	5085950	+	0	NA	Intergenic	Intergenic	13575	NR_015343	389458		NM_203393	ENSG00000273313	RBAKDN	-	RBAK downstream neighbor	ncRNA
196400	chr6	43306321	43306780	+	0	NA	intron (NM_001366068, intron 3 of 6)	intron (NM_001366068, intron 3 of 6)	2276	NM_001366068	401262		NM_206922	ENSG00000146215	CRIP3	CRP-3|TLP|TLP-A|h6LIMo	cysteine rich protein 3	protein-coding
141292	chr2	240235851	240236280	+	0	NA	Intergenic	Intergenic	-95407	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
237154	chrX	107450401	107451400	+	0	NA	Intergenic	Intergenic	-71550	NM_032428	84443		NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
50037	chr12	43833671	43833850	+	0	NA	Intergenic	AluJr|SINE|Alu	-2101	NM_001286211	84216		NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
180995	chr5	35819421	35820200	+	0	NA	Intergenic	MIRb|SINE|MIR	-37081	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
67330	chr14	69636271	69636950	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	25014	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
57673	chr12	122793351	122794150	+	0	NA	intron (NR_027918, intron 6 of 12)	AluJr4|SINE|Alu	19178	NM_201435	84660		NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|SPGF67|TSP-NY	coiled-coil domain containing 62	protein-coding
48021	chr12	6941301	6941930	+	0	NA	intron (NM_001007026, intron 9 of 9)	intron (NM_001007026, intron 9 of 9)	-1823	NM_001301836	113246		NM_138425	ENSG00000111678	C12orf57	C10|GRCC10	chromosome 12 open reading frame 57	protein-coding
182124	chr5	56103251	56103550	+	0	NA	intron (NM_024669, intron 10 of 11)	intron (NM_024669, intron 10 of 11)	108233	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
238028	chrX	135100451	135100750	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-1888	NM_001348255	644596		NM_001348255	ENSG00000196972	SMIM10L2B	LINC00086|LINC00087|NCRNA00086|NCRNA00087|SMIM10L2A	small integral membrane protein 10 like 2B	protein-coding
236744	chrX	78199951	78200130	+	0	NA	Intergenic	L2b|LINE|L2	-60390	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
125893	chr2	24739071	24740230	+	0	NA	intron (NM_147233, intron 16 of 20)	intron (NM_147233, intron 16 of 20)	-53465	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
218909	chr8	60752271	60752430	+	0	NA	intron (NM_001316690, intron 1 of 4)	intron (NM_001316690, intron 1 of 4)	11091	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
44413	chr11	103907701	103908100	+	0	NA	3' UTR (NM_033135, exon 7 of 7)	3' UTR (NM_033135, exon 7 of 7)	57994	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
86259	chr16	58471271	58471630	+	0	NA	intron (NM_001378343, intron 1 of 15)	MIRc|SINE|MIR	6340	NM_001378343	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
203369	chr6	170444201	170444880	+	0	NA	Intergenic	Intergenic	108767	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
128567	chr2	60897651	60898780	+	0	NA	intron (NM_001291746, intron 3 of 9)	L2c|LINE|L2	16641	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133367	chr2	117820351	117820700	+	0	NA	intron (NM_006773, intron 3 of 13)	MER20|DNA|hAT-Charlie	5834	NM_006773	8886		NM_006773	ENSG00000088205	DDX18	Has1|MrDb	DEAD-box helicase 18	protein-coding
147358	chr20	58321121	58321730	+	0	NA	intron (NM_020673, intron 2 of 6)	L1MEc|LINE|L1	11710	NM_020673	57403		NM_020673	ENSG00000124209	RAB22A	-	RAB22A, member RAS oncogene family	protein-coding
234446	chrX	17046521	17046800	+	0	NA	intron (NM_001080975, intron 5 of 17)	intron (NM_001080975, intron 5 of 17)	100002	NM_001080975	9185		NM_004726	ENSG00000169891	REPS2	POB1	RALBP1 associated Eps domain containing 2	protein-coding
35537	chr11	1576851	1577580	+	0	NA	intron (NR_021489, intron 1 of 1).3	AluSz6|SINE|Alu	4474	NR_021489	338651		NR_021489	ENSG00000233930	KRTAP5-AS1	-	KRTAP5-1/KRTAP5-2 antisense RNA 1	ncRNA
183413	chr5	78278551	78278880	+	0	NA	intron (NM_003664, intron 1 of 26)	MER1B|DNA|hAT-Charlie	15983	NM_003664	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
85645	chr16	55944271	55944530	+	0	NA	intron (NM_001190158, intron 2 of 13).2	intron (NM_001190158, intron 2 of 13).2	11631	NM_001190158	221223		NM_145024	ENSG00000159398	CES5A	CAUXIN|CES4C1|CES5|CES7|HEL126	carboxylesterase 5A	protein-coding
132259	chr2	102686921	102687180	+	0	NA	intron (NM_003048, intron 5 of 11)	intron (NM_003048, intron 5 of 11)	49838	NM_001322081	84804		NM_032718	ENSG00000135953	MFSD9	-	major facilitator superfamily domain containing 9	protein-coding
202257	chr6	156963971	156964200	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-72342	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
54455	chr12	91877971	91878240	+	0	NA	Intergenic	Intergenic	263608	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
91917	chr17	7317051	7317730	+	0	NA	intron (NM_032442, intron 27 of 28)	intron (NM_032442, intron 27 of 28)	-2030	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
73857	chr15	50145401	50145630	+	0	NA	Intergenic	Intergenic	-26282	NR_073597	79895		NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
72337	chr15	31315971	31316580	+	0	NA	Intergenic	Intergenic	-10560	NM_001302461	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
47754	chr12	6537531	6539000	+	0	NA	TTS (NM_080730)	TTS (NM_080730)	3001	NM_001256799	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
43556	chr11	82978321	82978830	+	0	NA	3' UTR (NM_001286061, exon 5 of 5)	3' UTR (NM_001286061, exon 5 of 5)	55699	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
9149	chr1	45519121	45519380	+	0	NA	intron (NM_001202431, intron 1 of 5)	intron (NM_001202431, intron 1 of 5)	2634	NM_181697	5052		NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
218659	chr8	57736201	57736400	+	0	NA	Intergenic	L1PA15|LINE|L1	-9849	NR_134276	286178		NR_134276	ENSG00000254139	LINC03018	-	long intergenic non-protein coding RNA 3018	ncRNA
148993	chr21	14259701	14260000	+	0	NA	Intergenic	Intergenic	-13949	NR_003087	150000		NM_138726	ENSG00000291052	ABCC13	ABCC13P|C21orf73|PRED6	ATP binding cassette subfamily C member 13 (pseudogene)	pseudo
72139	chr15	29032921	29033180	+	0	NA	intron (NM_001353793, intron 2 of 12).2	intron (NM_001353793, intron 2 of 12).2	37523	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
79	chr1	294221	294900	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-87963	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
16724	chr1	155248701	155249000	+	0	NA	intron (NM_198264, intron 6 of 8).2	AluSx1|SINE|Alu	-4223	NM_001005742	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
182670	chr5	67299521	67300380	+	0	NA	Intergenic	Intergenic	-103151	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
205158	chr7	7223251	7223550	+	0	NA	intron (NM_020156, intron 1 of 3)	AluSx1|SINE|Alu	-31754	NR_108073	101927354		NR_108073	ENSG00000230825	LINC03016	-	long intergenic non-protein coding RNA 3016	ncRNA
86779	chr16	67736401	67736800	+	0	NA	intron (NM_001320238, intron 4 of 12)	intron (NM_001320238, intron 4 of 12)	-17284	NM_001243650	81577		NM_030819	ENSG00000141098	GFOD2	-	Gfo/Idh/MocA-like oxidoreductase domain containing 2	protein-coding
166368	chr3	113014351	113014450	+	0	NA	intron (NM_001319112, intron 1 of 7)	AluY|SINE|Alu	5271	NM_001319111	25871		NM_015412	ENSG00000163608	NEPRO	ANXD3|C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
191885	chr6	15331051	15331680	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	82510	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
146914	chr20	51594921	51595730	+	0	NA	Intergenic	Intergenic	-32486	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
52362	chr12	55647671	55648000	+	0	NA	Intergenic	SVA_B|Retroposon|SVA	10943	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
126690	chr2	30146021	30147300	+	0	NA	promoter-TSS (NM_001127399)	promoter-TSS (NM_001127399)	-347	NM_001127401	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
176572	chr4	98658001	98659450	+	0	NA	promoter-TSS (NR_148380)	promoter-TSS (NR_148380)	-114	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
209046	chr7	74662221	74663030	+	0	NA	intron (NM_001163636, intron 1 of 33)	AluSx3|SINE|Alu	4907	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
160187	chr3	23762301	23763100	+	0	NA	Intergenic	Intergenic	-43255	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
226196	chr9	65258251	65258430	+	0	NA	Intergenic	CpG	26869	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
92236	chr17	7908601	7908800	+	0	NA	exon (NM_001005273, exon 36 of 40)	exon (NM_001005273, exon 36 of 40)	2577	NR_003000	677763		NR_003000	ENSG00000252835	SCARNA21	ACA68|SCARNA21A	small Cajal body-specific RNA 21	ncRNA
53698	chr12	68535851	68536800	+	0	NA	Intergenic	Intergenic	-74574	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
198815	chr6	109048201	109048500	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	-38795	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
88193	chr16	81752401	81753100	+	0	NA	Intergenic	Intergenic	-26541	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
47274	chr12	1590621	1591650	+	0	NA	intron (NM_152441, intron 1 of 1)	intron (NM_152441, intron 1 of 1)	3446	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
220014	chr8	90571021	90571380	+	0	NA	Intergenic	Intergenic	34863	NR_104062	101937451		NR_104062	ENSG00000253799	LINC01030	-	long intergenic non-protein coding RNA 1030	ncRNA
6852	chr1	31057621	31058850	+	0	NA	intron (NM_014676, intron 2 of 21)	intron (NM_014676, intron 2 of 21)	7482	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
133861	chr2	128323151	128323700	+	0	NA	Intergenic	Intergenic	-4557	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
117919	chr19	33000251	33000800	+	0	NA	intron (NM_033103, intron 9 of 14)	intron (NM_033103, intron 9 of 14)	28283	NM_001300978	91442		NM_152266	ENSG00000131944	FAAP24	C19orf40	FA core complex associated protein 24	protein-coding
143272	chr20	25198351	25198650	+	0	NA	intron (NM_001322390, intron 2 of 14)	intron (NM_001322390, intron 2 of 14)	-1608	NR_109994	101926889		NR_109994		LOC101926889	-	uncharacterized LOC101926889	ncRNA
157999	chr22	49866571	49866930	+	0	NA	intron (NM_014838, intron 1 of 1)	L1M8|LINE|L1	12906	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
21656	chr1	206687771	206688430	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	3195	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
114966	chr19	14005171	14007280	+	0	NA	promoter-TSS (NM_002918)	promoter-TSS (NM_002918)	95	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
96540	chr17	40357851	40357950	+	0	NA	TTS (NM_001024809)	TTS (NM_001024809)	6837	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
70062	chr14	100141421	100141900	+	0	NA	intron (NM_016337, intron 12 of 13)	intron (NM_016337, intron 12 of 13)	17985	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
176465	chr4	89309971	89310330	+	0	NA	Intergenic	MIRc|SINE|MIR	-2350	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
133605	chr2	122051751	122051850	+	0	NA	Intergenic	L1PA3|LINE|L1	296149	NM_004622	7247		NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
235375	chrX	44922821	44923580	+	0	NA	intron (NM_001291416, intron 2 of 28)	L1MEc|LINE|L1	50012	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
36345	chr11	3904921	3905580	+	0	NA	intron (NM_001382571, intron 1 of 9)	L2|LINE|L2	49188	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
129594	chr2	70084171	70084330	+	0	NA	intron (NR_033872, intron 2 of 10)	intron (NR_033872, intron 2 of 10)	2765	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
235840	chrX	49877651	49878100	+	0	NA	non-coding (NR_026742, exon 2 of 2)	non-coding (NR_026742, exon 2 of 2)	1481	NR_026742	158572		NM_001025449	ENSG00000234390	USP27X-DT	USP27X-AS1	USP27X divergent transcript	ncRNA
120217	chr19	42301991	42303950	+	0	NA	promoter-TSS (NM_001145939)	promoter-TSS (NM_001145939)	-170	NM_001145940	5050		NM_002573	ENSG00000079462	PAFAH1B3	PAFAHG	platelet activating factor acetylhydrolase 1b catalytic subunit 3	protein-coding
227700	chr9	93022421	93022680	+	0	NA	intron (NM_001369951, intron 14 of 17)	intron (NM_001369951, intron 14 of 17)	-7606	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
190110	chr5	177940971	177941530	+	0	NA	intron (NR_149047, intron 1 of 3)	LTR19B|LTR|ERV1	1723	NR_149047	100128340		NR_149047		LOC100128340	-	uncharacterized LOC100128340	ncRNA
87571	chr16	72241951	72242050	+	0	NA	Intergenic	Intergenic	-69550	NM_001160213	83449		NM_031293	ENSG00000118557	PMFBP1	SPGF31|STAP	polyamine modulated factor 1 binding protein 1	protein-coding
22232	chr1	212602251	212602550	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	-6361	NM_001674	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
79374	chr16	644851	645450	+	0	NA	intron (NR_138611, intron 1 of 3)	AluY|SINE|Alu	2096	NR_138611	84331		NM_032371	ENSG00000172366	MCRIP2	C16orf14|FAM195A|c349E10.1	MAPK regulated corepressor interacting protein 2	protein-coding
22454	chr1	221435421	221435750	+	0	NA	Intergenic	Intergenic	-99289	NR_024236	400804		NR_024236	ENSG00000234754	LINC02817	C1orf140	long intergenic non-protein coding RNA 2817	ncRNA
133955	chr2	130577671	130577830	+	0	NA	intron (NR_033930, intron 2 of 2).2	L1ME3A|LINE|L1	6901	NR_027314	150527		NR_027313	ENSG00000290614	PRSS40A	TISP43	serine protease 40A (pseudogene)	pseudo
217012	chr8	23177901	23178100	+	0	NA	Intergenic	AluSz|SINE|Alu	-13973	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
197235	chr6	69744621	69744930	+	0	NA	intron (NM_001363722, intron 5 of 15)	intron (NM_001363722, intron 5 of 15)	51691	NM_001363722	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
152244	chr22	20204701	20204900	+	0	NA	non-coding (NR_038460, exon 1 of 4)	non-coding (NR_038460, exon 1 of 4)	118	NR_038460	284865		NR_038460	ENSG00000249923	LINC02891	lnc-RTN4R-1	long intergenic non-protein coding RNA 2891	ncRNA
126946	chr2	33583251	33583580	+	0	NA	TTS (NM_001304538)	TTS (NM_001304538)	-13985	NR_146505	105374454		NR_146505	ENSG00000119812	RASGRP3-AS1	-	RASGRP3 antisense RNA 1	ncRNA
102440	chr17	75682771	75683130	+	0	NA	intron (NR_126036, intron 3 of 9)	AluSc5|SINE|Alu	15612	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
13900	chr1	119725571	119725730	+	0	NA	intron (NM_006623, intron 3 of 11)	intron (NM_006623, intron 3 of 11)	13716	NM_006623	26227		NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA	phosphoglycerate dehydrogenase	protein-coding
194061	chr6	31859621	31861480	+	0	NA	exon (NM_000434, exon 4 of 6).3	exon (NM_000434, exon 4 of 6).3	2271	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
74962	chr15	63824121	63824530	+	0	NA	intron (NM_003922, intron 1 of 77)	AluSc8|SINE|Alu	9623	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
119829	chr19	41359651	41360100	+	0	NA	intron (NM_030578, intron 2 of 3)	L2a|LINE|L2	-4072	NM_001369864	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
78557	chr15	93004621	93004880	+	0	NA	exon (NM_001271, exon 34 of 39)	exon (NM_001271, exon 34 of 39)	68406	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
91652	chr17	5500351	5502050	+	0	NA	promoter-TSS (NM_001162371)	promoter-TSS (NM_001162371)	-194	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
48856	chr12	12407971	12408530	+	0	NA	intron (NM_058169, intron 2 of 3)	L1MB4|LINE|L1	51172	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
48391	chr12	9632721	9633150	+	0	NA	promoter-TSS (NR_046448)	promoter-TSS (NR_046448)	-484	NR_046448	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
172281	chr4	1548171	1548330	+	0	NA	Intergenic	Intergenic	135741	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
214148	chr7	144362001	144362600	+	0	NA	intron (NM_005435, intron 1 of 14)	intron (NM_005435, intron 1 of 14)	-1333	NR_033942	728377		NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor 34, pseudogene	pseudo
173328	chr4	7646551	7647430	+	0	NA	intron (NM_020777, intron 4 of 26)	intron (NM_020777, intron 4 of 26)	-107100	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
193551	chr6	30614381	30615600	+	0	NA	TTS (NR_164781).2	TTS (NR_164781).2	2253	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
183295	chr5	76551601	76552000	+	0	NA	intron (NM_001285460, intron 1 of 34)	SVA_B|Retroposon|SVA	4391	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
62015	chr13	84126851	84127550	+	0	NA	Intergenic	MER52A|LTR|ERV1	-13402	NR_046871	100874128		NR_046871		LINC00333	NCRNA00333	long intergenic non-protein coding RNA 333	ncRNA
32377	chr10	102406971	102407200	+	0	NA	intron (NM_001270965, intron 12 of 17)	intron (NM_001270965, intron 12 of 17)	2192	NR_073110	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
121852	chr19	48230751	48231050	+	0	NA	exon (NM_001184901, exon 6 of 11)	exon (NM_001184901, exon 6 of 11)	10163	NR_033679	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
16212	chr1	153887571	153888030	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	35172	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
45876	chr11	119726901	119727150	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	2175	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
75577	chr15	67075351	67075450	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	9798	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
44849	chr11	114136901	114137300	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	73889	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
145253	chr20	39025101	39025330	+	0	NA	intron (NM_001190809, intron 16 of 20)	intron (NM_001190809, intron 16 of 20)	62871	NR_033905	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
84350	chr16	30207111	30207700	+	0	NA	promoter-TSS (NR_002556).2	promoter-TSS (NR_002556).2	-478	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
167085	chr3	127289621	127289880	+	0	NA	Intergenic	AluJb|SINE|Alu	-1704	NM_001362810	100419008		NM_001362810	ENSG00000239620	PRR20G	-	proline rich 20G	protein-coding
104477	chr17	81124601	81124800	+	0	NA	TTS (NR_030394)	TTS (NR_030394)	673	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
234479	chrX	17952871	17953030	+	0	NA	Intergenic	Intergenic	-91652	NM_001172732	10742		NM_021785	ENSG00000131831	RAI2	-	retinoic acid induced 2	protein-coding
90155	chr17	179921	180180	+	0	NA	intron (NM_003585, intron 1 of 8).2	intron (NM_003585, intron 1 of 8).2	1600	NM_003585	8447		NM_003585	ENSG00000272636	DOC2B	DOC2BL	double C2 domain beta	protein-coding
76194	chr15	73518701	73519300	+	0	NA	intron (NM_001348772, intron 2 of 4)	L1MB2|LINE|L1	50543	NR_103844	101241892		NR_103844	ENSG00000281183	NPTN-IT1	lncRNA-LET	NPTN intronic transcript 1	ncRNA
93562	chr17	19087121	19087930	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-1918	NR_164158	102724624		NR_164158		LOC102724624	-	uncharacterized protein ENSP00000382042-like	ncRNA
180482	chr5	13416801	13417030	+	0	NA	Intergenic	L1HS|LINE|L1	-384029	NR_147005	105374658		NR_147005		LINC02220	-	long intergenic non-protein coding RNA 2220	ncRNA
65586	chr14	52020971	52021330	+	0	NA	intron (NM_007361, intron 12 of 21)	intron (NM_007361, intron 12 of 21)	31604	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
87620	chr16	74384071	74384700	+	0	NA	intron (NM_001306094, intron 2 of 6)	AluSc|SINE|Alu	6433	NM_001306094	440348		NM_001018059	ENSG00000196436	NPIPB15	A-761H5.4|NPIPL2	nuclear pore complex interacting protein family member B15	protein-coding
8265	chr1	39819121	39819580	+	0	NA	Intergenic	Intergenic	30374	NR_135805	101929536		NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
166396	chr3	113537671	113537830	+	0	NA	intron (NM_001322297, intron 1 of 24)	MLT1A0|LTR|ERVL-MaLR	5195	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
99110	chr17	49210151	49211330	+	0	NA	promoter-TSS (NM_016428)	promoter-TSS (NM_016428)	33	NM_016428	51225		NM_016428	ENSG00000108798	ABI3	NESH|SSH3BP3	ABI family member 3	protein-coding
163425	chr3	50570621	50571150	+	0	NA	intron (NM_001377429, intron 1 of 10)	intron (NM_001377429, intron 1 of 10)	142	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
60478	chr13	41193771	41194810	+	0	NA	5' UTR (NM_032138, exon 1 of 1)	5' UTR (NM_032138, exon 1 of 1)	279	NM_032138	84078		NM_032138	ENSG00000120696	KBTBD7	-	kelch repeat and BTB domain containing 7	protein-coding
220387	chr8	100234851	100235150	+	0	NA	intron (NM_001374321, intron 16 of 18)	intron (NM_001374321, intron 16 of 18)	67193	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
139226	chr2	219296001	219296200	+	0	NA	intron (NM_001199763, intron 17 of 21)	intron (NM_001199763, intron 17 of 21)	-1900	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
226168	chr9	64342501	64342700	+	0	NA	Intergenic	REP522|Satellite|telo	-26794	NR_146419	110006327		NR_146419		ANKRD20A4-ANKRD20A20P	-	ANKRD20A4-ANKRD20A20P readthrough	ncRNA
178264	chr4	143700101	143700500	+	0	NA	exon (NM_001168235, exon 1 of 8)	exon (NM_001168235, exon 1 of 8)	375	NM_001168235	166752		NM_001168235	ENSG00000183090	FREM3	-	FRAS1 related extracellular matrix 3	protein-coding
172000	chr4	956201	956600	+	0	NA	intron (NM_032326, intron 10 of 10)	intron (NM_032326, intron 10 of 10)	17169	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
138936	chr2	218241651	218242200	+	0	NA	intron (NM_152862, intron 7 of 10)	intron (NM_152862, intron 7 of 10)	-17571	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
219844	chr8	81844551	81844650	+	0	NA	Intergenic	HERV4_I-int|LTR|ERV1	-2314	NM_022133	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
93291	chr17	18142871	18143180	+	0	NA	intron (NM_016239, intron 24 of 64)	MIRb|SINE|MIR	-25464	NR_164159	105371566		NR_164159		LOC105371566	-	uncharacterized LOC105371566	ncRNA
157124	chr22	42663751	42664130	+	0	NA	Intergenic	AluSx|SINE|Alu	-14548	NM_000398	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
33392	chr10	117656801	117657030	+	0	NA	Intergenic	HAL1b|LINE|L1	-111847	NR_002791	196047		NR_002791	ENSG00000229847	EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
103101	chr17	77344871	77345230	+	0	NA	intron (NM_006640, intron 1 of 10)	L1MB3|LINE|L1	25535	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
120030	chr19	41954401	41955030	+	0	NA	Intergenic	AluSq2|SINE|Alu	4606	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
158058	chr22	49951221	49951480	+	0	NA	Intergenic	Intergenic	-9422	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
154918	chr22	37202901	37203100	+	0	NA	Intergenic	Intergenic	-3577	NM_001365878	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
110350	chr19	1886971	1887730	+	0	NA	Intergenic	Intergenic	-1854	NM_031213	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
224889	chr9	32383871	32385130	+	0	NA	promoter-TSS (NM_002197)	promoter-TSS (NM_002197)	-103	NM_001278352	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
114998	chr19	14052921	14053180	+	0	NA	TTS (NM_001367327)	TTS (NM_001367327)	4588	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
11489	chr1	90729521	90729880	+	0	NA	Intergenic	Intergenic	-12398	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
196622	chr6	44261521	44261880	+	0	NA	exon (NM_004556, exon 3 of 6)	exon (NM_004556, exon 3 of 6)	-3810	NM_001286511	347734		NM_178148	ENSG00000157593	SLC35B2	HLD26|PAPST1|SLL|UGTrel4	solute carrier family 35 member B2	protein-coding
184647	chr5	107485301	107485500	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	185537	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
15481	chr1	150368501	150368750	+	0	NA	intron (NM_015203, intron 1 of 10)	AluSq2|SINE|Alu	4514	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
161539	chr3	42647001	42647200	+	0	NA	3' UTR (NM_001349125, exon 19 of 19)	3' UTR (NM_001349125, exon 19 of 19)	-6597	NM_145166	92999		NM_145166	ENSG00000114853	ZBTB47	ZNF651	zinc finger and BTB domain containing 47	protein-coding
32668	chr10	103894401	103895200	+	0	NA	intron (NM_024928, intron 7 of 9)	intron (NM_024928, intron 7 of 9)	23384	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
27764	chr10	35338371	35339430	+	0	NA	intron (NM_001282852, intron 1 of 8)	intron (NM_001282852, intron 1 of 8)	2026	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
23566	chr1	229411171	229411330	+	0	NA	Intergenic	Intergenic	22844	NM_001100	58		NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|CMYP2A|CMYP2B|CMYP2C|MPFD|NEM1|NEM2|NEM3|SHPM	actin alpha 1, skeletal muscle	protein-coding
239485	chrY	56745821	56746430	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-208130	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
58597	chr12	132470801	132471600	+	0	NA	Intergenic	L1MA9|LINE|L1	-18951	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
214239	chr7	148875901	148876500	+	0	NA	intron (NM_001203248, intron 1 of 19)	AluSx1|SINE|Alu	7285	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
105395	chr17	82748521	82748780	+	0	NA	intron (NM_022158, intron 4 of 5)	L1MEc|LINE|L1	-3415	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
333	chr1	994571	995080	+	0	NA	Intergenic	L1MEc|LINE|L1	5272	NM_021170	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
59012	chr13	20174751	20175380	+	0	NA	Intergenic	Intergenic	-14013	NM_021954	2700		NM_021954	ENSG00000121743	GJA3	CTRCT14|CX46|CZP3	gap junction protein alpha 3	protein-coding
213759	chr7	140517921	140518250	+	0	NA	TTS (NM_015689)	TTS (NM_015689)	-38516	NM_001145125	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
140788	chr2	235710371	235710930	+	0	NA	intron (NM_001037131, intron 2 of 17)	intron (NM_001037131, intron 2 of 17)	-192729	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
107418	chr18	46184301	46184780	+	0	NA	intron (NM_145055, intron 1 of 4)	AluJb|SINE|Alu	10506	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
14042	chr1	120749401	120750000	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	25761	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
128548	chr2	60872421	60872930	+	0	NA	intron (NR_033980, intron 1 of 2)	CR1-L3A_Croc|LINE|CR1	8639	NR_033980	400957		NR_033980	ENSG00000228414	REL-DT	LINC01185	REL divergent transcript	ncRNA
133348	chr2	113923351	113924380	+	0	NA	intron (NM_005721, intron 3 of 11)	intron (NM_005721, intron 3 of 11)	-32873	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
117852	chr19	32224451	32224850	+	0	NA	Intergenic	CpG	-118734	NR_110694	101927411		NR_110694	ENSG00000267204	LINC01782	-	long intergenic non-protein coding RNA 1782	ncRNA
65782	chr14	54493221	54493480	+	0	NA	Intergenic	MER50B|LTR|ERV1	-4370	NM_004124	2764		NM_004124	ENSG00000197045	GMFB	GMF	glia maturation factor beta	protein-coding
185705	chr5	132010621	132010880	+	0	NA	intron (NM_001205250, intron 1 of 20)	intron (NM_001205250, intron 1 of 20)	908	NM_001205247	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
166841	chr3	123028421	123028800	+	0	NA	promoter-TSS (NM_001256348)	promoter-TSS (NM_001256348)	-5	NR_046079	54437		NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
43625	chr11	83192721	83194000	+	0	NA	promoter-TSS (NM_001300976)	promoter-TSS (NM_001300976)	309	NR_149009	100506282		NM_018705	ENSG00000247137	ANKRD42-DT	-	ANKRD42 divergent transcript	ncRNA
170963	chr3	194483771	194484330	+	0	NA	intron (NR_164666, intron 2 of 32)	intron (NR_164666, intron 2 of 32)	2952	NM_001367549	79572		NM_024524	ENSG00000133657	ATP13A3	AFURS1|PPH5	ATPase 13A3	protein-coding
97564	chr17	44086551	44088050	+	0	NA	intron (NM_001382393, intron 13 of 26)	intron (NM_001382393, intron 13 of 26)	16389	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
93766	chr17	20073001	20074330	+	0	NA	intron (NM_001243439, intron 1 of 14)	intron (NM_001243439, intron 1 of 14)	-13357	NM_152904	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
35251	chr11	854501	855380	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	10494	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
31259	chr10	92087721	92088000	+	0	NA	intron (NM_014912, intron 8 of 9)	intron (NM_014912, intron 8 of 9)	155419	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
14554	chr1	144915771	144915930	+	0	NA	intron (NM_001385228, intron 3 of 8)	intron (NM_001385228, intron 3 of 8)	-178446	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
95352	chr17	35819451	35819550	+	0	NA	intron (NM_139215, intron 2 of 15).2	intron (NM_139215, intron 2 of 15).2	10016	NM_003487	8148		NM_003487	ENSG00000270647	TAF15	Npl3|RBP56|TAF2N|TAFII68	TATA-box binding protein associated factor 15	protein-coding
107685	chr18	49420951	49421050	+	0	NA	intron (NM_001374431, intron 2 of 16)	L1PA5|LINE|L1	39645	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
110665	chr19	2254471	2254700	+	0	NA	intron (NM_144616, intron 2 of 6)	MIRb|SINE|MIR	1832	NM_144616	126306		NM_144616	ENSG00000167476	JSRP1	JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding
174102	chr4	36169501	36169900	+	0	NA	intron (NR_146894, intron 9 of 32)	AluSx3|SINE|Alu	74239	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
218866	chr8	60521551	60521650	+	0	NA	intron (NM_001242644, intron 1 of 6)	Tigger18a|DNA|TcMar-Tigger	4613	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
237715	chrX	124827221	124827480	+	0	NA	intron (NM_001163279, intron 3 of 31)	intron (NM_001163279, intron 3 of 31)	136467	NM_001163279	10178		NM_014253	ENSG00000009694	TENM1	ODZ1|ODZ3|TEN-M1|TEN1|TNM|TNM1|ten-1	teneurin transmembrane protein 1	protein-coding
143994	chr20	32976701	32977300	+	0	NA	Intergenic	LTR3|LTR|ERVK	27433	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
120854	chr19	45523371	45524650	+	0	NA	intron (NM_003370, intron 9 of 12)	intron (NM_003370, intron 9 of 12)	16531	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
179246	chr4	174365151	174365250	+	0	NA	Intergenic	Intergenic	-58595	NR_036236	100423042		NR_036236	ENSG00000265846	MIR4276	-	microRNA 4276	ncRNA
110801	chr19	2460321	2460580	+	0	NA	intron (NR_134931, intron 1 of 1)	AluJo|SINE|Alu	1735	NR_134931	101928602		NR_134931	ENSG00000267201	LINC01775	-	long intergenic non-protein coding RNA 1775	ncRNA
109788	chr19	1147421	1148080	+	0	NA	intron (NM_014963, intron 3 of 31)	intron (NM_014963, intron 3 of 31)	-15529	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
18290	chr1	161130271	161130830	+	0	NA	intron (NM_001039711, intron 1 of 4)	intron (NM_001039711, intron 1 of 4)	1916	NM_001039712	9191		NM_004216	ENSG00000158796	DEDD	CASP8IP1|DEDD1|DEDPro1|DEFT|FLDED-1|FLDED1|KE05	death effector domain containing	protein-coding
87737	chr16	75150401	75150680	+	0	NA	intron (NM_001318475, intron 1 of 3)	L1MD|LINE|L1	1489	NM_001318475	162239		NM_153688	ENSG00000184517	ZFP1	ZNF475	ZFP1 zinc finger protein	protein-coding
123610	chr19	54508721	54509900	+	0	NA	intron (NM_002288, intron 4 of 4)	intron (NM_002288, intron 4 of 4)	6479	NM_021270	3904		NM_002288	ENSG00000167618	LAIR2	CD306	leukocyte associated immunoglobulin like receptor 2	protein-coding
182808	chr5	69024271	69024530	+	0	NA	intron (NR_130778, intron 1 of 3)	MER91C|DNA|hAT-Tip100	5527	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
201367	chr6	144725701	144726380	+	0	NA	intron (NM_001375323, intron 3 of 24)	intron (NM_001375323, intron 3 of 24)	142892	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
131369	chr2	96205271	96205530	+	0	NA	intron (NM_001385622, intron 1 of 7)	intron (NM_001385622, intron 1 of 7)	-3016	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
188414	chr5	154179821	154180480	+	0	NA	Intergenic	Intergenic	-10583	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
10942	chr1	84158071	84158430	+	0	NA	intron (NM_182948, intron 1 of 9)	AluSz|SINE|Alu	-5934	NM_001242857	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
223116	chr8	143467621	143468280	+	0	NA	intron (NM_015117, intron 8 of 11)	intron (NM_015117, intron 8 of 11)	-37218	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
115638	chr19	16106271	16106430	+	0	NA	Intergenic	Intergenic	-5539	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
66170	chr14	60646301	60646500	+	0	NA	exon (NM_005982, exon 2 of 2)	exon (NM_005982, exon 2 of 2)	-2248	NR_162089	113218481		NR_162089		MIR9718	-	microRNA 9718	ncRNA
23762	chr1	232923651	232924650	+	0	NA	Intergenic	Intergenic	-26461	NR_138025	84284		NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase|THEP1	nucleoside-triphosphatase, cancer-related	protein-coding
229340	chr9	120912801	120913000	+	0	NA	intron (NM_005658, intron 5 of 7)	L3|LINE|CR1	1672	NM_001190947	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
73658	chr15	44716501	44716700	+	0	NA	intron (NM_004048, intron 3 of 3)	intron (NM_004048, intron 3 of 3)	-1244	NR_162102	113218500		NR_162102		MIR10393	-	microRNA 10393	ncRNA
229875	chr9	126491251	126491830	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-81036	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
61999	chr13	80477821	80478580	+	0	NA	Intergenic	Intergenic	-137074	NM_005842	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
65991	chr14	58151671	58152650	+	0	NA	promoter-TSS (NM_001001872)	promoter-TSS (NM_001001872)	53	NM_001320173	145407		NM_001001872	ENSG00000139971	ARMH4	C14orf37|UT2|c14_5376	armadillo like helical domain containing 4	protein-coding
181484	chr5	42953971	42954500	+	0	NA	Intergenic	Intergenic	39098	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
18265	chr1	161079671	161079830	+	0	NA	exon (NM_030916, exon 2 of 9)	exon (NM_030916, exon 2 of 9)	9808	NM_030916	81607		NM_030916	ENSG00000143217	NECTIN4	EDSS1|LNIR|PRR4|PVRL4|nectin-4	nectin cell adhesion molecule 4	protein-coding
37394	chr11	17161671	17162430	+	0	NA	intron (NM_001321380, intron 1 of 31)	intron (NM_001321380, intron 1 of 31)	45936	NM_002645	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
25356	chr10	6401821	6402730	+	0	NA	intron (NM_001323267, intron 17 of 17)	L1PA7|LINE|L1	51959	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
157977	chr22	49825571	49826500	+	0	NA	promoter-TSS (NM_001304809)	promoter-TSS (NM_001304809)	-135	NM_001304809	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
155164	chr22	37685101	37685300	+	0	NA	Intergenic	Intergenic	-1143	NM_024313	79159		NM_024313	ENSG00000273899	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
142487	chr20	4683621	4684400	+	0	NA	Intergenic	AluSz|SINE|Alu	-2446	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
202200	chr6	156496551	156496650	+	0	NA	Intergenic	AluY|SINE|Alu	117850	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
11037	chr1	84975001	84975450	+	0	NA	intron (NM_001330647, intron 1 of 14)	L1MA2|LINE|L1	21888	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
131063	chr2	88629201	88629400	+	0	NA	intron (NR_135540, intron 1 of 1)	L2a|LINE|L2	1471	NR_135540	101928403		NR_135540	ENSG00000234028	EIF2AK3-DT	-	EIF2AK3 divergent transcript	ncRNA
163316	chr3	50361871	50362530	+	0	NA	TTS (NM_001005505)	TTS (NM_001005505)	-2679	NM_007024	11070		NM_007024	ENSG00000126062	TMEM115	PL6	transmembrane protein 115	protein-coding
128989	chr2	64737451	64737750	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-83687	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
218898	chr8	60677901	60679400	+	0	NA	promoter-TSS (NM_017780)	promoter-TSS (NM_017780)	-90	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
223634	chr8	144332671	144333650	+	0	NA	3' UTR (NM_031309, exon 2 of 2)	3' UTR (NM_031309, exon 2 of 2)	3322	NM_031309	83482		NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding
208064	chr7	56081471	56082000	+	0	NA	exon (NM_001258459, exon 10 of 11)	exon (NM_001258459, exon 10 of 11)	11217	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
25891	chr10	11269771	11269930	+	0	NA	intron (NM_001326330, intron 6 of 12)	intron (NM_001326330, intron 6 of 12)	74824	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
21899	chr1	207814471	207815030	+	0	NA	intron (NR_135299, intron 4 of 5)	intron (NR_135299, intron 4 of 5)	-3629	NR_026817	148696		NM_001039568		LOC148696	-	uncharacterized LOC148696	ncRNA
25405	chr10	6539271	6539430	+	0	NA	intron (NM_001323265, intron 1 of 17)	MER1A|DNA|hAT-Charlie	40926	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
69365	chr14	94009451	94009750	+	0	NA	TTS (NM_001351596)	TTS (NM_001351596)	12299	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
75731	chr15	68227571	68227730	+	0	NA	intron (NM_017882, intron 1 of 6)	intron (NM_017882, intron 1 of 6)	2078	NM_017882	54982		NM_017882	ENSG00000128973	CLN6	CLN4A|CLN6A|HsT18960|nclf	CLN6 transmembrane ER protein	protein-coding
176776	chr4	102484851	102485150	+	0	NA	intron (NR_136202, intron 1 of 4)	L1PA6|LINE|L1	-16359	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
71739	chr15	20624251	20624350	+	0	NA	Intergenic	Intergenic	61951	NR_027411	729786		NR_027411	ENSG00000181984	GOLGA8CP	GOLGA8C	golgin A8 family member C, pseudogene	pseudo
70973	chr14	104703151	104703650	+	0	NA	exon (NM_001031714, exon 4 of 22)	exon (NM_001031714, exon 4 of 22)	13782	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
137181	chr2	191129501	191130100	+	0	NA	intron (NM_003151, intron 3 of 23)	L2|LINE|L2	21194	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
125071	chr2	9641351	9642150	+	0	NA	Intergenic	L1MB3|LINE|L1	-10753	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
77145	chr15	79919371	79919530	+	0	NA	intron (NR_037653, intron 1 of 2)	intron (NR_037653, intron 1 of 2)	-3321	NR_028330	283687		NM_175898		ST20-AS1	C15orf37	ST20 antisense RNA 1	ncRNA
143129	chr20	23606301	23606900	+	0	NA	promoter-TSS (NM_001008693)	promoter-TSS (NM_001008693)	-683	NM_001008693	128822		NM_001008693	ENSG00000173335	CST9	CLM|CTES7A	cystatin 9	protein-coding
82990	chr16	22010001	22010200	+	0	NA	intron (NM_001164579, intron 1 of 2)	intron (NM_001164579, intron 1 of 2)	1989	NM_001164579	730094		NM_173501	ENSG00000185716	MOSMO	ATTHOG|BC030336|C16orf52	modulator of smoothened	protein-coding
28376	chr10	47286801	47287400	+	0	NA	Intergenic	Intergenic	-13097	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
100336	chr17	59888171	59888780	+	0	NA	intron (NM_001193610, intron 2 of 7)	intron (NM_001193610, intron 2 of 7)	4468	NM_016261	51174		NM_016261	ENSG00000108423	TUBD1	TUBD	tubulin delta 1	protein-coding
76002	chr15	70853751	70854450	+	0	NA	promoter-TSS (NM_018357)	promoter-TSS (NM_018357)	57	NM_197958	55323		NM_018357	ENSG00000166173	LARP6	ACHN	La ribonucleoprotein 6, translational regulator	protein-coding
190228	chr5	178246201	178246400	+	0	NA	exon (NM_173465, exon 24 of 29)	exon (NM_173465, exon 24 of 29)	-13478	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
234836	chrX	24467001	24467750	+	0	NA	intron (NM_001142386, intron 1 of 11)	intron (NM_001142386, intron 1 of 11)	2089	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
145889	chr20	45953721	45954330	+	0	NA	intron (NM_022095, intron 17 of 27)	intron (NM_022095, intron 17 of 27)	18178	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
71568	chr14	106398451	106399380	+	0	NA	Intergenic	CpG	-83524	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
174474	chr4	39816551	39816980	+	0	NA	Intergenic	AluSx|SINE|Alu	118629	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
25198	chr10	5683121	5683450	+	0	NA	Intergenic	Intergenic	-1553	NM_001321783	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
121919	chr19	48424251	48424350	+	0	NA	intron (NM_000836, intron 11 of 13)	AluY|SINE|Alu	-21683	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
196457	chr6	43512351	43513730	+	0	NA	intron (NM_015388, intron 6 of 8)	intron (NM_015388, intron 6 of 8)	-2694	NM_001271882	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
213931	chr7	142620301	142620750	+	0	NA	intron (NM_001363538, intron 11 of 11)	L2c|LINE|L2	-45774	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
167553	chr3	129362601	129363130	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	34483	NR_002992	677797		NR_002992	ENSG00000207088	SNORA7B	ACA7B	small nucleolar RNA, H/ACA box 7B	snoRNA
136538	chr2	177312121	177312200	+	0	NA	intron (NR_026966, intron 6 of 8)	AluY|SINE|Alu	1722	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
69390	chr14	94040321	94041150	+	0	NA	intron (NM_023112, intron 3 of 5)	L2a|LINE|L2	14395	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
6033	chr1	27111801	27112880	+	0	NA	intron (NR_046474, intron 1 of 10)	intron (NR_046474, intron 1 of 10)	42785	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
43272	chr11	75706171	75707030	+	0	NA	Intergenic	Intergenic	-11238	NM_025098	80168		NM_025098	ENSG00000166391	MOGAT2	DGAT2L5|DGAT2L5.|MGAT2|hDC5	monoacylglycerol O-acyltransferase 2	protein-coding
234511	chrX	19477821	19478100	+	0	NA	intron (NM_001001671, intron 3 of 28)	GA-rich|Low_complexity|Low_complexity	37301	NM_001001671	389840		NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
82965	chr16	21927621	21928730	+	0	NA	Intergenic	Intergenic	-25186	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
169140	chr3	156160621	156161580	+	0	NA	intron (NM_003471, intron 1 of 13)	intron (NM_003471, intron 1 of 13)	18138	NM_003471	7881		NM_003471	ENSG00000169282	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel subfamily A regulatory beta subunit 1	protein-coding
51440	chr12	52036251	52037750	+	0	NA	promoter-TSS (NM_001202234)	promoter-TSS (NM_001202234)	-715	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
98901	chr17	48591021	48591530	+	0	NA	TTS (NM_002147)	TTS (NM_002147)	855	NR_033201	404266		NR_033201	ENSG00000233101	HOXB-AS3	-	HOXB cluster antisense RNA 3	ncRNA
211700	chr7	106767821	106768670	+	0	NA	Intergenic	MER57B2|LTR|ERV1	-97037	NM_001282427	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
48699	chr12	10602711	10603630	+	0	NA	Intergenic	AluY|SINE|Alu	-3335	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
224253	chr9	5922001	5922600	+	0	NA	exon (NM_001017969, exon 8 of 8)	exon (NM_001017969, exon 8 of 8)	31411	NM_005511	2315		NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
155505	chr22	38679971	38680330	+	0	NA	Intergenic	AluSx|SINE|Alu	-1807	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
186215	chr5	134379871	134380600	+	0	NA	intron (NM_003337, intron 3 of 5)	intron (NM_003337, intron 3 of 5)	8666	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
104499	chr17	81167751	81168050	+	0	NA	intron (NM_001354639, intron 2 of 6)	intron (NM_001354639, intron 2 of 6)	-1679	NM_001080395	9625		NM_004920	ENSG00000181409	AATK	AATYK|AATYK1|LMR1|LMTK1|PPP1R77|p35BP	apoptosis associated tyrosine kinase	protein-coding
42297	chr11	68448571	68448950	+	0	NA	intron (NM_002335, intron 22 of 22)	intron (NM_002335, intron 22 of 22)	-11992	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
64277	chr14	23327751	23328450	+	0	NA	Intergenic	Intergenic	6094	NM_001360552	8106		NM_004643	ENSG00000100836	PABPN1	OPMD|PAB2|PABII|PABP-2|PABP2	poly(A) binding protein nuclear 1	protein-coding
234497	chrX	19195201	19195780	+	0	NA	Intergenic	Intergenic	-72853	NM_001184833	10149		NM_005756	ENSG00000173698	ADGRG2	CBAVDX|EDDM6|GPR64|HE6|TM7LN2	adhesion G protein-coupled receptor G2	protein-coding
74073	chr15	52653021	52653480	+	0	NA	intron (NR_169544, intron 2 of 10)	intron (NR_169544, intron 2 of 10)	-1210	NR_169552	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
98372	chr17	46412201	46412530	+	0	NA	intron (NR_033799, intron 3 of 6)	MLT1C|LTR|ERVL-MaLR	39552	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
223733	chr8	144477521	144478500	+	0	NA	promoter-TSS (NM_001329443)	promoter-TSS (NM_001329443)	28	NM_001329443	84988		NM_032902	ENSG00000160972	PPP1R16A	MYPT3	protein phosphatase 1 regulatory subunit 16A	protein-coding
112580	chr19	6653701	6655580	+	0	NA	Intergenic	Intergenic	15518	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
149336	chr21	29056051	29056380	+	0	NA	TTS (NM_001282909)	TTS (NM_001282909)	17433	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
228082	chr9	96408751	96409150	+	0	NA	intron (NM_153695, intron 1 of 4)	MSTB1|LTR|ERVL-MaLR	9420	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
150486	chr21	42677551	42677650	+	0	NA	intron (NM_001001580, intron 1 of 13)	intron (NM_001001580, intron 1 of 13)	23848	NM_001001580	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
56154	chr12	111368551	111369750	+	0	NA	promoter-TSS (NM_001177997)	promoter-TSS (NM_001177997)	-55	NM_001177997	144717		NM_144671	ENSG00000198324	PHETA1	FAM109A|IPIP27A|SES1	PH domain containing endocytic trafficking adaptor 1	protein-coding
202081	chr6	154252571	154252930	+	0	NA	intron (NM_001130700, intron 3 of 11)	L2|LINE|L2	77331	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
38271	chr11	39372421	39373050	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	723877	NR_120553	101928536		NR_120553	ENSG00000254562	LINC01493	-	long intergenic non-protein coding RNA 1493	ncRNA
99047	chr17	48905821	48906280	+	0	NA	intron (NR_135674, intron 1 of 3)	AluJb|SINE|Alu	-2357	NM_023079	65264		NM_023079	ENSG00000159202	UBE2Z	HOYS7|USE1	ubiquitin conjugating enzyme E2 Z	protein-coding
94189	chr17	28567521	28568580	+	0	NA	intron (NM_033198, intron 3 of 11)	L2a|LINE|L2	3474	NM_033198	94005		NM_033198	ENSG00000087111	PIGS	DEE95|GPIBD18|PIG-S	phosphatidylinositol glycan anchor biosynthesis class S	protein-coding
222557	chr8	140610471	140610630	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	25083	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
173686	chr4	15375771	15375930	+	0	NA	intron (NM_001135171, intron 1 of 2)	intron (NM_001135171, intron 1 of 2)	1299	NM_001135171	114905		NM_031911	ENSG00000163145	C1QTNF7	CTRP7|ZACRP7	C1q and TNF related 7	protein-coding
108267	chr18	63260121	63260380	+	0	NA	intron (NM_000633, intron 2 of 2)	(CACA)n|Simple_repeat|Simple_repeat	59519	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
26740	chr10	22691051	22691650	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	22758	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
238269	chrX	149074551	149074650	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	355509	NM_001170628	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
4967	chr1	24152571	24152730	+	0	NA	Intergenic	Intergenic	-9510	NM_021258	58985		NM_021258	ENSG00000142677	IL22RA1	CRF2-9|IL22R|IL22R1	interleukin 22 receptor subunit alpha 1	protein-coding
1744	chr1	5998651	5999230	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	6264	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
221012	chr8	116383701	116383930	+	0	NA	Intergenic	Intergenic	-58756	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
57505	chr12	122103201	122103600	+	0	NA	intron (NM_014938, intron 1 of 16)	AluSq4|SINE|Alu	24644	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
74286	chr15	57706201	57707200	+	0	NA	promoter-TSS (NM_015532)	promoter-TSS (NM_015532)	-14	NM_015532	81488		NM_015532	ENSG00000255529	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	RNA polymerase II subunit M	protein-coding
112669	chr19	7004421	7004830	+	0	NA	TTS (NR_024372)	TTS (NR_024372)	1790	NR_024372	497049		NM_001011541		MARK2P21	-	MARK2 pseudogene 21	pseudo
11814	chr1	92836121	92836680	+	0	NA	promoter-TSS (NR_000006)	promoter-TSS (NR_000006)	-889	NR_000006	6083		NR_000006	ENSG00000206680	SNORD21	RNU21|U21	small nucleolar RNA, C/D box 21	snoRNA
5659	chr1	26305951	26307780	+	0	NA	promoter-TSS (NM_001077262)	promoter-TSS (NM_001077262)	-161	NM_183008	91544		NM_145345	ENSG00000158062	UBXN11	COA-1|PP2243|SOC|SOCI|UBXD5	UBX domain protein 11	protein-coding
117780	chr19	29760001	29760600	+	0	NA	Intergenic	Intergenic	-44511	NM_001256047	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
216925	chr8	22720651	22721000	+	0	NA	intron (NM_001363233, intron 6 of 6)	intron (NM_001363233, intron 6 of 6)	-27345	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
16841	chr1	155684321	155685050	+	0	NA	intron (NM_139121, intron 1 of 10)	AluSx3|SINE|Alu	3971	NM_001198903	55249		NM_018253	ENSG00000163374	YY1AP1	GRNG|HCCA1|HCCA2|YY1AP	YY1 associated protein 1	protein-coding
139142	chr2	219041251	219041980	+	0	NA	promoter-TSS (NM_001278295)	promoter-TSS (NM_001278295)	-64	NM_001278295	255101		NM_152389	ENSG00000181378	CFAP65	CCDC108|SPGF40	cilia and flagella associated protein 65	protein-coding
100760	chr17	63966601	63967300	+	0	NA	intron (NM_000334, intron 6 of 23)	Zaphod2|DNA|hAT-Tip100	5968	NM_000334	6329		NM_000334	ENSG00000007314	SCN4A	CMS16|CMYP22A|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium voltage-gated channel alpha subunit 4	protein-coding
140294	chr2	232409171	232409730	+	0	NA	intron (NM_031313, intron 10 of 10)	CpG	2606	NM_031313	251		NM_031313	ENSG00000163286	ALPG	ALPPL|ALPPL2|GCAP	alkaline phosphatase, germ cell	protein-coding
38751	chr11	47097171	47097530	+	0	NA	intron (NM_001003676, intron 3 of 7)	SVA_F|Retroposon|SVA	79529	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
235430	chrX	45807671	45809030	+	0	NA	Intergenic	Intergenic	43140	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
184668	chr5	107982101	107982300	+	0	NA	intron (NM_001163315, intron 7 of 8)	intron (NM_001163315, intron 7 of 8)	-311263	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
64757	chr14	34563121	34563700	+	0	NA	intron (NR_159357, intron 12 of 12)	AluY|SINE|Alu	-7021	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
162904	chr3	49402871	49403030	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluSx3|SINE|Alu	9026	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
134206	chr2	134586651	134586830	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	132260	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
94387	chr17	28950301	28950900	+	0	NA	intron (NM_020889, intron 1 of 8)	CpG-10911	918	NM_020889	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
68282	chr14	77119651	77120250	+	0	NA	Intergenic	Intergenic	20794	NM_001364172	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
149517	chr21	32770871	32772750	+	0	NA	promoter-TSS (NR_027873)	promoter-TSS (NR_027873)	48	NR_027873	94104		NM_013329	ENSG00000159086	PAXBP1	BM020|C21orf66|FSAP105|GCFC|GCFC1	PAX3 and PAX7 binding protein 1	protein-coding
161728	chr3	44058421	44058880	+	0	NA	Intergenic	Intergenic	-55562	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA
209097	chr7	74876801	74877500	+	0	NA	Intergenic	AluSx1|SINE|Alu	13462	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
139099	chr2	218894301	218894950	+	0	NA	TTS (NM_025216)	TTS (NM_025216)	13773	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
102830	chr17	76464771	76465080	+	0	NA	intron (NM_001166579, intron 3 of 6)	AluSq2|SINE|Alu	-2678	NM_001088	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
226147	chr9	63703371	63704230	+	0	NA	Intergenic	SST1|Satellite|centr	-109141	NR_146625	203274		NR_146625		LINC00537	-	long intergenic non-protein coding RNA 537	ncRNA
16148	chr1	153679301	153680900	+	0	NA	intron (NM_000906, intron 1 of 21)	intron (NM_000906, intron 1 of 21)	1412	NM_000906	4881		NM_000906	ENSG00000169418	NPR1	ANPRA|ANPa|GUC2A|GUCY2A|NPRA	natriuretic peptide receptor 1	protein-coding
162654	chr3	48898021	48900250	+	0	NA	promoter-TSS (NM_000387)	promoter-TSS (NM_000387)	-253	NM_000387	788		NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	solute carrier family 25 member 20	protein-coding
179279	chr4	176692551	176692650	+	0	NA	intron (NM_005429, intron 4 of 6)	L1PA3|LINE|L1	100322	NM_005429	7424		NM_005429	ENSG00000150630	VEGFC	Flt4-L|LMPH1D|LMPHM4|VRP	vascular endothelial growth factor C	protein-coding
212016	chr7	114918921	114919830	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2779	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
227757	chr9	93105101	93106280	+	0	NA	intron (NR_160511, intron 1 of 4)	L1MB4|LINE|L1	9473	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
100491	chr17	61902651	61902950	+	0	NA	intron (NM_020748, intron 9 of 24)	AluJr4|SINE|Alu	25182	NM_020748	57508		NM_020748	ENSG00000108506	INTS2	INT2|KIAA1287	integrator complex subunit 2	protein-coding
155932	chr22	39659751	39659850	+	0	NA	exon (NM_021096, exon 14 of 37)	exon (NM_021096, exon 14 of 37)	89047	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
37024	chr11	12103271	12103430	+	0	NA	Intergenic	L2b|LINE|L2	-7226	NM_001282668	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
163537	chr3	51670201	51672430	+	0	NA	promoter-TSS (NR_103462)	promoter-TSS (NR_103462)	63	NM_001243725	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
149760	chr21	34677971	34678130	+	0	NA	intron (NM_053277, intron 1 of 5)	MER58B|DNA|hAT-Charlie	9056	NM_001317009	54102		NM_053277	ENSG00000159212	CLIC6	CLIC1L	chloride intracellular channel 6	protein-coding
109294	chr19	556871	557030	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	12897	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
146563	chr20	50020451	50020550	+	0	NA	Intergenic	Intergenic	21129	NR_051976	100887755		NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
47046	chr12	538751	540400	+	0	NA	intron (NM_173593, intron 3 of 19)	L1MB8|LINE|L1	46911	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
7472	chr1	33125151	33125450	+	0	NA	Intergenic	Intergenic	43122	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
159490	chr3	14179851	14180150	+	0	NA	intron (NM_014463, intron 1 of 3)	L2c|LINE|L2	1183	NM_014463	27258		NM_014463	ENSG00000170860	LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
15765	chr1	151163771	151164180	+	0	NA	intron (NM_001136543, intron 1 of 2)	AluSx|SINE|Alu	1927	NM_001136543	388695		NM_212551	ENSG00000163155	LYSMD1	SB145	LysM domain containing 1	protein-coding
119410	chr19	40267871	40268230	+	0	NA	intron (NM_001243027, intron 1 of 13)	intron (NM_001243027, intron 1 of 13)	-2699	NM_001330511	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
182977	chr5	71588701	71589330	+	0	NA	intron (NM_022132, intron 1 of 16)	intron (NM_022132, intron 1 of 16)	1675	NM_022132	64087		NM_022132	ENSG00000131844	MCCC2	MCCB|MCCCbeta	methylcrotonyl-CoA carboxylase subunit 2	protein-coding
46533	chr11	128462101	128462300	+	0	NA	3' UTR (NM_001330451, exon 7 of 7)	3' UTR (NM_001330451, exon 7 of 7)	60110	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
231101	chr9	129805101	129805700	+	0	NA	intron (NR_134113, intron 2 of 4)	AluSx|SINE|Alu	2216	NM_001317894	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
100517	chr17	62165171	62165530	+	0	NA	Intergenic	Intergenic	-100072	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
126997	chr2	36799571	36799730	+	0	NA	intron (NM_053276, intron 12 of 15)	AluJr|SINE|Alu	102943	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
230519	chr9	128322051	128323550	+	0	NA	promoter-TSS (NM_001305942)	promoter-TSS (NM_001305942)	-39	NM_016035	51117		NM_016035	ENSG00000167113	COQ4	CGI-92|COQ10D7|SPAX10	coenzyme Q4	protein-coding
157808	chr22	46806921	46807180	+	0	NA	intron (NM_001284305, intron 4 of 12)	intron (NM_001284305, intron 4 of 12)	33123	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
173263	chr4	7045821	7046280	+	0	NA	non-coding (NR_033828, exon 1 of 4)	non-coding (NR_033828, exon 1 of 4)	181	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
15790	chr1	151250351	151250650	+	0	NA	TTS (NM_001330689)	TTS (NM_001330689)	-4234	NM_002810	5710		NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	proteasome 26S subunit ubiquitin receptor, non-ATPase 4	protein-coding
32867	chr10	110079221	110080230	+	0	NA	intron (NM_016824, intron 1 of 14)	AluSz|SINE|Alu	-71344	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
141038	chr2	238229571	238229730	+	0	NA	intron (NR_026926, intron 1 of 2)	L2|LINE|L2	2027	NR_026926	151174		NR_026925	ENSG00000186235	LINC02610	-	long intergenic non-protein coding RNA 2610	ncRNA
20424	chr1	198234351	198235030	+	0	NA	intron (NM_133494, intron 2 of 9)	intron (NM_133494, intron 2 of 9)	77692	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
43752	chr11	86142501	86142700	+	0	NA	Intergenic	Intergenic	-72740	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
162753	chr3	49057801	49058000	+	0	NA	intron (NM_001320580, intron 3 of 10)	intron (NM_001320580, intron 3 of 10)	-28502	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
149491	chr21	32411201	32414550	+	0	NA	exon (NM_001320744, exon 1 of 6)	exon (NM_001320744, exon 1 of 6)	169	NR_135467	59271		NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21	eva-1 homolog C	protein-coding
45366	chr11	118265651	118265950	+	0	NA	Intergenic	Intergenic	-1264	NM_144765	10205		NM_005797	ENSG00000149573	MPZL2	DFNB111|EVA|EVA1	myelin protein zero like 2	protein-coding
214167	chr7	144818221	144819150	+	0	NA	intron (NR_146934, intron 1 of 6)	intron (NR_146934, intron 1 of 6)	17255	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
159761	chr3	16289821	16292380	+	0	NA	intron (NM_001352980, intron 6 of 9)	intron (NM_001352980, intron 6 of 9)	25888	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
53897	chr12	71118371	71118530	+	0	NA	Intergenic	L1PA2|LINE|L1	39359	NM_001369760	7103		NM_004616	ENSG00000127324	TSPAN8	CO-029|TM4SF3	tetraspanin 8	protein-coding
74495	chr15	60044921	60045180	+	0	NA	Intergenic	Intergenic	40739	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
74801	chr15	63440801	63441930	+	0	NA	Intergenic	MIRb|SINE|MIR	51135	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
201861	chr6	150490971	150491670	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-108565	NM_001329804	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
79864	chr16	1497251	1497650	+	0	NA	exon (NM_001351846, exon 5 of 21)	exon (NM_001351846, exon 5 of 21)	4090	NM_016111	9894		NM_016111	ENSG00000100726	TELO2	CLK2|TEL2|YHFS	telomere maintenance 2	protein-coding
178582	chr4	151220051	151220150	+	0	NA	intron (NM_001378121, intron 2 of 20)	L1ME3Cz|LINE|L1	6320	NM_001378130	152503		NM_001009555	ENSG00000109686	SH3D19	EBP|EVE1|Eve-1|Kryn|SH3P19	SH3 domain containing 19	protein-coding
189561	chr5	175059921	175060580	+	0	NA	Intergenic	Intergenic	-64519	NR_046113	441116		NM_001004348	ENSG00000204754	LINC01951	-	long intergenic non-protein coding RNA 1951	ncRNA
238137	chrX	136711271	136711430	+	0	NA	intron (NM_004840, intron 7 of 21)	MIRc|SINE|MIR	56465	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
219434	chr8	71975221	71975480	+	0	NA	intron (NR_033652, intron 4 of 4)	intron (NR_033652, intron 4 of 4)	100234	NM_007332	8989		NM_007332	ENSG00000104321	TRPA1	ANKTM1|FEPS|FEPS1|p120	transient receptor potential cation channel subfamily A member 1	protein-coding
108139	chr18	62521951	62524000	+	0	NA	promoter-TSS (NR_126534)	promoter-TSS (NR_126534)	-50	NM_017742	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
110307	chr19	1841301	1841850	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	6908	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
232515	chr9	136310351	136310950	+	0	NA	Intergenic	Intergenic	-3749	NM_001291516	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
147945	chr20	62953761	62955180	+	0	NA	intron (NM_001302643, intron 2 of 13)	intron (NM_001302643, intron 2 of 13)	1761	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
88016	chr16	81008851	81009450	+	0	NA	intron (NM_001270473, intron 1 of 9)	AluSz|SINE|Alu	-2265	NR_147842	56942		NM_020188	ENSG00000103121	CMC2	2310061C15Rik|C16orf61|DC13	C-X9-C motif containing 2	protein-coding
171512	chr3	196637601	196637800	+	0	NA	Intergenic	L2b|LINE|L2	-1994	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
824	chr1	1569421	1570030	+	0	NA	intron (NM_014188, intron 1 of 4)	AluJo|SINE|Alu	5138	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
114809	chr19	13800971	13801330	+	0	NA	intron (NM_023072, intron 2 of 12)	AluJr|SINE|Alu	5707	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
74460	chr15	59691151	59691950	+	0	NA	Intergenic	Intergenic	-2230	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
78231	chr15	90658871	90659500	+	0	NA	intron (NR_120372, intron 2 of 3)	MLT1N2|LTR|ERVL-MaLR	-1049	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
81345	chr16	4796601	4796800	+	0	NA	TTS (NM_024589)	TTS (NM_024589)	1331	NM_001253794	440335		NM_001253790	ENSG00000267795	SMIM22	CASIMO1	small integral membrane protein 22	protein-coding
92125	chr17	7614301	7616530	+	0	NA	promoter-TSS (NM_004860)	promoter-TSS (NM_004860)	-518	NM_004860	9513		NM_004860	ENSG00000129245	FXR2	FMR1L2|FXR2P	FMR1 autosomal homolog 2	protein-coding
74108	chr15	52803371	52804100	+	0	NA	Intergenic	Intergenic	-13399	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
138705	chr2	213119021	213120080	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	30887	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
13402	chr1	113961801	113962000	+	0	NA	intron (NM_181358, intron 6 of 13)	AluSx4|SINE|Alu	8023	NM_181358	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
186493	chr5	138222801	138223350	+	0	NA	Intergenic	Intergenic	-9752	NM_004661	8697		NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
35948	chr11	2531201	2531950	+	0	NA	intron (NM_181798, intron 2 of 15)	intron (NM_181798, intron 2 of 15)	70121	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
34033	chr10	124724351	124724750	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	19828	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
172057	chr4	1019651	1020180	+	0	NA	intron (NM_001370296, intron 2 of 6)	intron (NM_001370296, intron 2 of 6)	7451	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
50489	chr12	47785321	47785580	+	0	NA	exon (NM_001308090, exon 23 of 25)	exon (NM_001308090, exon 23 of 25)	12212	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
122473	chr19	49546571	49547530	+	0	NA	Intergenic	L1MEb|LINE|L1	19047	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
141974	chr20	1336471	1337330	+	0	NA	intron (NR_040047, intron 1 of 2)	intron (NR_040047, intron 1 of 2)	-7761	NM_080489	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
184940	chr5	112988971	112989130	+	0	NA	intron (NM_152624, intron 2 of 10)	intron (NM_152624, intron 2 of 10)	12252	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
96815	chr17	41932921	41933600	+	0	NA	intron (NM_031421, intron 1 of 11)	AluSx|SINE|Alu	2643	NR_110662	83538		NM_031421	ENSG00000204815	ODAD4	TTC25	outer dynein arm docking complex subunit 4	protein-coding
184696	chr5	108769151	108769600	+	0	NA	intron (NM_005246, intron 2 of 19)	L2a|LINE|L2	20427	NM_001308028	2241		NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding
54548	chr12	92143671	92147350	+	0	NA	promoter-TSS (NR_135037)	promoter-TSS (NR_135037)	336	NM_001731	694		NM_001731	ENSG00000133639	BTG1	APRO2	BTG anti-proliferation factor 1	protein-coding
75120	chr15	64521901	64522300	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	61522	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
8062	chr1	38964151	38964550	+	0	NA	Intergenic	Intergenic	-22520	NM_017821	54933		NM_017821	ENSG00000158315	RHBDL2	RRP2	rhomboid like 2	protein-coding
19518	chr1	175481171	175481330	+	0	NA	intron (NM_001328635, intron 2 of 22)	(AATG)n|Simple_repeat|Simple_repeat	262345	NM_001328635	7143		NM_003285	ENSG00000116147	TNR	NEDSTO|TN-R	tenascin R	protein-coding
132883	chr2	111209071	111209250	+	0	NA	intron (NR_015395, intron 5 of 6)	intron (NR_015395, intron 5 of 6)	88246	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
135414	chr2	161123151	161123480	+	0	NA	Intergenic	Intergenic	-13640	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
201955	chr6	151948401	151948630	+	0	NA	intron (NM_001385572, intron 4 of 6)	intron (NM_001385572, intron 4 of 6)	139408	NM_001328100	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
69020	chr14	91513701	91514500	+	0	NA	Intergenic	AluSz|SINE|Alu	-3546	NR_169193	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
210231	chr7	99367921	99368630	+	0	NA	Intergenic	AluY|SINE|Alu	-6455	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
52872	chr12	57180201	57180980	+	0	NA	intron (NM_002332, intron 32 of 88)	intron (NM_002332, intron 32 of 88)	-13914	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
31779	chr10	98167101	98167580	+	0	NA	intron (NM_001256621, intron 3 of 7)	intron (NM_001256621, intron 3 of 7)	32683	NM_001256619	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
176749	chr4	101534551	101534850	+	0	NA	Intergenic	L1PB1|LINE|L1	186923	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
35771	chr11	2159801	2160500	+	0	NA	intron (NM_001291897, intron 2 of 2)	intron (NM_001291897, intron 2 of 2)	1059	NM_001185097	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
21525	chr1	205808551	205809530	+	0	NA	intron (NM_173854, intron 2 of 10)	L2b|LINE|L2	4158	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
1419	chr1	2576601	2576980	+	0	NA	intron (NR_121638, intron 1 of 3)	intron (NR_121638, intron 1 of 3)	-9733	NR_036637	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
19382	chr1	174017001	174017400	+	0	NA	intron (NM_172071, intron 1 of 19)	intron (NM_172071, intron 1 of 19)	5157	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
30933	chr10	87302371	87302750	+	0	NA	intron (NR_024397, intron 3 of 5)	L2a|LINE|L2	-39851	NR_029408	439994		NR_029408	ENSG00000224914	LINC00863	-	long intergenic non-protein coding RNA 863	ncRNA
166223	chr3	112097551	112097650	+	0	NA	intron (NM_024616, intron 2 of 5)	intron (NM_024616, intron 2 of 5)	11211	NM_024616	79669		NM_024616	ENSG00000114529	C3orf52	HYPT15|TTMP	chromosome 3 open reading frame 52	protein-coding
193928	chr6	31644921	31645650	+	0	NA	intron (NM_080702, intron 9 of 24).6	intron (NM_080702, intron 9 of 24).6	7105	NM_001098534	7917		NM_004639	ENSG00000204463	BAG6	BAG-6|BAT3|D6S52E|G3	BAG cochaperone 6	protein-coding
204085	chr7	2103201	2103400	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-14248	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
205483	chr7	17706771	17707030	+	0	NA	Intergenic	Intergenic	-147991	NR_110013	101927630		NR_110013	ENSG00000236039	LINC02889	-	long intergenic non-protein coding RNA 2889	ncRNA
202814	chr6	159683071	159683430	+	0	NA	intron (NM_001322815, intron 3 of 3)	AluSx1|SINE|Alu	9991	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
166347	chr3	112974981	112975630	+	0	NA	promoter-TSS (NM_138806)	promoter-TSS (NM_138806)	-202	NM_170780	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
177159	chr4	108140201	108140680	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	26357	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
201605	chr6	149362121	149362580	+	0	NA	intron (NM_001369506, intron 2 of 7)	MSTA|LTR|ERVL-MaLR	-37912	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
139393	chr2	222301271	222301630	+	0	NA	intron (NR_161172, intron 1 of 1)	intron (NR_161172, intron 1 of 1)	-2452	NM_000438	5077		NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|PAX-3|WS1|WS3	paired box 3	protein-coding
208408	chr7	66737021	66737280	+	0	NA	intron (NM_001367727, intron 4 of 11)	AluJr|SINE|Alu	-3583	NM_001287062	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
186201	chr5	134279701	134280180	+	0	NA	Intergenic	AluSq2|SINE|Alu	-53867	NM_002715	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
47304	chr12	1688801	1689000	+	0	NA	Intergenic	Intergenic	-2170	NM_001375363	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
126432	chr2	27892351	27892450	+	0	NA	5' UTR (NM_001329113, exon 2 of 14)	5' UTR (NM_001329113, exon 2 of 14)	-1286	NR_028308	100302650		NR_028308		BABAM2-AS1	BRE-AS1	BABAM2 antisense RNA 1	ncRNA
205090	chr7	6702171	6702330	+	0	NA	intron (NM_016265, intron 2 of 4)	L2-3_Crp|LINE|L2	4697	NM_006956	7559		NM_006956	ENSG00000164631	ZNF12	GIOT-3|HZF11|KOX3|ZNF325	zinc finger protein 12	protein-coding
115591	chr19	16029271	16029630	+	0	NA	Intergenic	AluJb|SINE|Alu	-4263	NR_024335	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
155511	chr22	38686351	38686650	+	0	NA	3' UTR (NM_001360236, exon 5 of 5)	3' UTR (NM_001360236, exon 5 of 5)	4543	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
35818	chr11	2259071	2259230	+	0	NA	Intergenic	Intergenic	11438	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
155836	chr22	39412101	39413500	+	0	NA	intron (NM_153497, intron 1 of 10)	L1M1|LINE|L1	13020	NM_153497	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
156364	chr22	41021521	41023430	+	0	NA	Intergenic	CpG	51246	NR_132979	106635682		NR_132979		SNORD140	-	small nucleolar RNA, C/D box 140	snoRNA
58749	chr12	132609301	132609500	+	0	NA	intron (NM_001195520, intron 1 of 5)	L1MB3|LINE|L1	1182	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
206945	chr7	38244571	38244980	+	0	NA	Intergenic	AluSx3|SINE|Alu	28872	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
204804	chr7	5644571	5644730	+	0	NA	intron (NM_207111, intron 14 of 16)	AluSz|SINE|Alu	35811	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
237639	chrX	124215621	124216180	+	0	NA	Intergenic	HAL1|LINE|L1	-116760	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
107637	chr18	48954251	48954800	+	0	NA	Intergenic	Intergenic	-3814	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
74592	chr15	60565251	60565550	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	27126	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
239437	chrY	56702471	56702830	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-251605	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
130304	chr2	84925501	84926380	+	0	NA	Intergenic	Intergenic	20284	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
218134	chr8	41608071	41608330	+	0	NA	intron (NM_178819, intron 2 of 12)	intron (NM_178819, intron 2 of 12)	29684	NM_001363197	137964		NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
109439	chr19	729871	730200	+	0	NA	intron (NM_002579, intron 4 of 8)	intron (NM_002579, intron 4 of 8)	-21077	NM_173481	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
144396	chr20	35269001	35269780	+	0	NA	intron (NM_006690, intron 6 of 8)	intron (NM_006690, intron 6 of 8)	8732	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
171759	chr3	198168671	198169160	+	0	NA	intron (NR_146164, intron 4 of 17)	intron (NR_146164, intron 4 of 17)	15709	NR_146164	728262		NM_001145248	ENSG00000290937	FAM157A	GTF2IP18	family with sequence similarity 157 member A	ncRNA
227328	chr9	89447751	89447850	+	0	NA	intron (NM_001371200, intron 2 of 20)	L2b|LINE|L2	32090	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
145510	chr20	43983851	43984530	+	0	NA	intron (NM_032883, intron 3 of 9)	intron (NM_032883, intron 3 of 9)	38294	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
161357	chr3	40458901	40459130	+	0	NA	intron (NM_001034996, intron 3 of 5)	AluJb|SINE|Alu	1676	NM_001034996	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
88228	chr16	81896001	81896200	+	0	NA	intron (NM_002661, intron 13 of 32)	intron (NM_002661, intron 13 of 32)	115370	NM_145168	93517		NM_145168	ENSG00000184860	SDR42E1	HSPC105	short chain dehydrogenase/reductase family 42E, member 1	protein-coding
72882	chr15	40309951	40310480	+	0	NA	Intergenic	Intergenic	-2280	NM_001284297	5330		NM_004573	ENSG00000137841	PLCB2	PLC-beta-2	phospholipase C beta 2	protein-coding
5344	chr1	25263301	25263500	+	0	NA	intron (NR_135788, intron 1 of 3)	THE1B|LTR|ERVL-MaLR	4525	NR_135777	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
13505	chr1	114741521	114741780	+	0	NA	exon (NM_001130523, exon 3 of 20)	exon (NM_001130523, exon 3 of 20)	16334	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
130031	chr2	74399851	74400250	+	0	NA	Intergenic	LTR42|LTR|ERVL	-8184	NM_001190836	1639		NM_004082	ENSG00000204843	DCTN1	DAP-150|DP-150|HMND14|P135	dynactin subunit 1	protein-coding
91426	chr17	4721371	4722180	+	0	NA	TTS (NM_001257331)	TTS (NM_001257331)	-9653	NM_001305000	400569		NM_001001683	ENSG00000161920	MED11	HSPC296|NDDRSB	mediator complex subunit 11	protein-coding
31119	chr10	89367471	89368430	+	0	NA	Intergenic	AluJr|SINE|Alu	-10106	NM_001010987	439996		NM_001010987	ENSG00000204010	IFIT1B	IFIT1L|bA149I23.6	interferon induced protein with tetratricopeptide repeats 1B	protein-coding
35111	chr11	655271	655430	+	0	NA	intron (NM_001293634, intron 8 of 10)	intron (NM_001293634, intron 8 of 10)	18081	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
41187	chr11	65633551	65634630	+	0	NA	intron (NM_032223, intron 27 of 34)	intron (NM_032223, intron 27 of 34)	-2220	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
38063	chr11	35180901	35181500	+	0	NA	intron (NM_001202557, intron 3 of 8)	intron (NM_001202557, intron 3 of 8)	18250	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
209108	chr7	74912701	74912900	+	0	NA	intron (NM_001382555, intron 2 of 7)	AluSx|SINE|Alu	2278	NM_001382555	100101268		NM_001382555	ENSG00000184616	SPDYE12	SPDYE12P	speedy/RINGO cell cycle regulator family member E12	protein-coding
79204	chr16	345701	346280	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	6733	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
112819	chr19	7517251	7517350	+	0	NA	intron (NM_018083, intron 1 of 1)	intron (NM_018083, intron 1 of 1)	1197	NM_018083	140467		NM_018083	ENSG00000198816	ZNF358	ZFEND	zinc finger protein 358	protein-coding
74261	chr15	57073051	57073350	+	0	NA	intron (NM_001322156, intron 5 of 21)	intron (NM_001322156, intron 5 of 21)	-146230	NM_001306220	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
78430	chr15	92768351	92768630	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-26994	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
152899	chr22	22736151	22736330	+	0	NA	Intergenic	Intergenic	-86536	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
12364	chr1	101243171	101244030	+	0	NA	Intergenic	Intergenic	6581	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
186080	chr5	134100071	134100900	+	0	NA	Intergenic	Intergenic	-14196	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
56722	chr12	120113051	120113150	+	0	NA	intron (NM_006861, intron 1 of 5)	AluSx|SINE|Alu	3653	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
178907	chr4	158667651	158668050	+	0	NA	non-coding (NR_077235, exon 2 of 2)	non-coding (NR_077235, exon 2 of 2)	4037	NM_001008393	201725		NM_001008393	ENSG00000205208	C4orf46	RCDG1	chromosome 4 open reading frame 46	protein-coding
198350	chr6	105137851	105137950	+	0	NA	promoter-TSS (NM_001199563)	promoter-TSS (NM_001199563)	213	NR_037157	154442		NR_037157	ENSG00000203808	BVES-AS1	C6orf112|bA99L11.2	BVES antisense RNA 1	ncRNA
129045	chr2	65057301	65058350	+	0	NA	intron (NM_015147, intron 1 of 6)	FLAM_C|SINE|Alu	1409	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
159389	chr3	13418651	13419200	+	0	NA	intron (NM_024923, intron 1 of 39)	AluSz|SINE|Alu	1397	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
140439	chr2	233143721	233143980	+	0	NA	intron (NM_001017915, intron 6 of 26).2	(GTGATG)n|Simple_repeat|Simple_repeat	83508	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
70479	chr14	102080401	102081050	+	0	NA	TTS (NM_005348)	TTS (NM_005348)	6319	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
22931	chr1	225944601	225945150	+	0	NA	Intergenic	Intergenic	-3383	NM_001172425	7044		NM_003240	ENSG00000143768	LEFTY2	EBAF|LEFTA|LEFTYA|TGFB4	left-right determination factor 2	protein-coding
155497	chr22	38644351	38644550	+	0	NA	intron (NM_001384270, intron 3 of 16)	L1MC1|LINE|L1	11942	NM_001013647	646851		NM_001013647	ENSG00000184949	FAM227A	-	family with sequence similarity 227 member A	protein-coding
115417	chr19	15299551	15300080	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-19364	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
106195	chr18	11519271	11519430	+	0	NA	Intergenic	Intergenic	29302	NR_110778	101927433		NR_110778	ENSG00000267252	LINC01255	-	long intergenic non-protein coding RNA 1255	ncRNA
145767	chr20	45347701	45348660	+	0	NA	intron (NM_002999, intron 1 of 4)	CpG	244	NM_002999	6385		NM_002999	ENSG00000124145	SDC4	SYND4	syndecan 4	protein-coding
92624	chr17	10111471	10111630	+	0	NA	intron (NM_201433, intron 1 of 13)	AluY|SINE|Alu	-74893	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
85830	chr16	57000311	57001000	+	0	NA	intron (NR_169520, intron 1 of 47)	intron (NR_169520, intron 1 of 47)	11098	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
21422	chr1	205319171	205320100	+	0	NA	intron (NM_030952, intron 1 of 6)	intron (NM_030952, intron 1 of 6)	2110	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
234505	chrX	19345851	19346150	+	0	NA	intron (NM_001173456, intron 1 of 9)	intron (NM_001173456, intron 1 of 9)	2073	NM_001173454	5160		NM_000284	ENSG00000131828	PDHA1	E1alpha|PDHA|PDHAD|PDHCE1A|PHE1A	pyruvate dehydrogenase E1 subunit alpha 1	protein-coding
63896	chr14	21863221	21863480	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	-192333	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
162248	chr3	47279951	47280050	+	0	NA	intron (NM_022342, intron 1 of 19)	AluJb|SINE|Alu	2598	NM_001377477	64147		NM_022342	ENSG00000088727	KIF9	-	kinesin family member 9	protein-coding
232386	chr9	135966221	135966480	+	0	NA	Intergenic	Intergenic	-4977	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
96945	chr17	42182921	42183250	+	0	NA	TTS (NM_001524)	TTS (NM_001524)	-1943	NM_012285	23415		NM_012285	ENSG00000089558	KCNH4	BEC2|ELK1|Kv12.3	potassium voltage-gated channel subfamily H member 4	protein-coding
178657	chr4	152460421	152460680	+	0	NA	intron (NM_001349798, intron 2 of 13)	L1M4a1|LINE|L1	28866	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
237701	chrX	124379501	124379700	+	0	NA	3' UTR (NM_014253, exon 31 of 31)	3' UTR (NM_014253, exon 31 of 31)	33037	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
62831	chr13	109774651	109774950	+	0	NA	intron (NM_003749, intron 1 of 1)	MIRc|SINE|MIR	11783	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
63351	chr13	114032171	114032430	+	0	NA	intron (NM_001320822, intron 4 of 23).2	LTR39|LTR|ERV1	45655	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
150895	chr21	44147201	44147780	+	0	NA	Intergenic	Intergenic	12372	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
110815	chr19	2480521	2480780	+	0	NA	Intergenic	Intergenic	4523	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
171931	chr4	871251	871980	+	0	NA	intron (NM_001318134, intron 15 of 24)	intron (NM_001318134, intron 15 of 24)	-45486	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
61493	chr13	52609321	52609680	+	0	NA	Intergenic	Intergenic	-8025	NM_001011724	144983		NM_001011724	ENSG00000139675	HNRNPA1L2	-	heterogeneous nuclear ribonucleoprotein A1 like 2	protein-coding
23996	chr1	235238171	235238930	+	0	NA	intron (NM_016374, intron 8 of 23)	intron (NM_016374, intron 8 of 23)	-48434	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
100203	chr17	59149671	59150330	+	0	NA	intron (NM_001330399, intron 1 of 3)	FLAM_A|SINE|Alu	1221	NR_029842	407027		NR_029842	ENSG00000207996	MIR301A	MIR301|MIRN301|MIRN301A|mir-301a	microRNA 301a	ncRNA
225841	chr9	38030201	38030400	+	0	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	38927	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
93781	chr17	20270271	20270430	+	0	NA	intron (NM_001033555, intron 10 of 12)	AluJr|SINE|Alu	-50824	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
142435	chr20	3926401	3926600	+	0	NA	TTS (NM_001134338)	TTS (NM_001134338)	-8937	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
62138	chr13	95703371	95703730	+	0	NA	intron (NM_006260, intron 1 of 11)	Tigger17a|DNA|TcMar-Tigger	26411	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
32207	chr10	101779801	101780380	+	0	NA	intron (NM_001206389, intron 1 of 4)	CpG	279	NM_001206389	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
80859	chr16	3555251	3555650	+	0	NA	intron (NM_178844, intron 8 of 19)	L1MB5|LINE|L1	21953	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
51958	chr12	53754771	53754930	+	0	NA	intron (NR_104332, intron 2 of 2)	intron (NR_104332, intron 2 of 2)	2184	NR_104332	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
92977	chr17	17120551	17121500	+	0	NA	intron (NM_015134, intron 3 of 22)	MIR|SINE|MIR	78568	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
138442	chr2	206087001	206087350	+	0	NA	Intergenic	Intergenic	-1001	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
40340	chr11	63935221	63936130	+	0	NA	Intergenic	L2a|LINE|L2	-3327	NM_024771	79829		NM_024771	ENSG00000110583	NAA40	NAT11|NatD|PATT1|hNatD	N-alpha-acetyltransferase 40, NatD catalytic subunit	protein-coding
38609	chr11	46329671	46330030	+	0	NA	Intergenic	Intergenic	-3076	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
652	chr1	1353601	1354190	+	0	NA	exon (NM_001282585, exon 9 of 10)	exon (NM_001282585, exon 9 of 10)	-4477	NM_001330311	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
16911	chr1	155884401	155884600	+	0	NA	3' UTR (NM_152280, exon 4 of 4)	3' UTR (NM_152280, exon 4 of 4)	24933	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
159083	chr3	12187501	12187700	+	0	NA	exon (NM_133625, exon 12 of 13)	exon (NM_133625, exon 12 of 13)	-28688	NM_003256	7079		NM_003256	ENSG00000157150	TIMP4	TIMP-4	TIMP metallopeptidase inhibitor 4	protein-coding
207563	chr7	44883971	44886450	+	0	NA	exon (NM_033224, exon 1 of 1)	exon (NM_033224, exon 1 of 1)	320	NM_033224	5814		NM_033224	ENSG00000146676	PURB	PURBETA	purine rich element binding protein B	protein-coding
234164	chrX	11707421	11707680	+	0	NA	Intergenic	L1HS|LINE|L1	-41630	NM_006125	395		NM_001174	ENSG00000047648	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
148191	chr20	63549821	63550430	+	0	NA	Intergenic	Intergenic	-2621	NM_080823	6725		NM_080823	ENSG00000125508	SRMS	C20orf148|PTK70|SRM|dJ697K14.1	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding
210583	chr7	100367871	100368130	+	0	NA	TTS (NM_001371931)	TTS (NM_001371931)	-5487	NM_178273	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
136691	chr2	181126301	181126800	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	2713	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
214006	chr7	143244321	143244580	+	0	NA	intron (NM_001363538, intron 8 of 11)	intron (NM_001363538, intron 8 of 11)	-18979	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
93992	chr17	21990551	21990850	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-212295	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
230752	chr9	128891871	128893030	+	0	NA	intron (NM_019594, intron 2 of 3)	intron (NM_019594, intron 2 of 3)	-9927	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
56214	chr12	111592271	111593380	+	0	NA	intron (NM_001310121, intron 1 of 25)	intron (NM_001310121, intron 1 of 25)	6490	NM_001372574	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
111180	chr19	3369401	3369830	+	0	NA	intron (NM_001245002, intron 1 of 10)	CpG	3032	NM_001245004	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
93823	chr17	20801701	20802050	+	0	NA	Intergenic	AluYm1|SINE|Alu	-66652	NR_160710	440416		NR_104185	ENSG00000233098	CCDC144NL-AS1	-	CCDC144NL antisense RNA 1	ncRNA
149203	chr21	24428551	24429300	+	0	NA	intron (NR_135519, intron 1 of 2)	intron (NR_135519, intron 1 of 2)	185	NR_135520	105372751		NR_135519	ENSG00000237484	LINC01684	lnc-JAM2-6	long intergenic non-protein coding RNA 1684	ncRNA
211686	chr7	106657371	106657630	+	0	NA	3' UTR (NM_175884, exon 1 of 1)	3' UTR (NM_175884, exon 1 of 1)	3658	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
168054	chr3	136939501	136940080	+	0	NA	intron (NM_001190796, intron 1 of 2)	L1MB5|LINE|L1	9288	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
132216	chr2	102235271	102235680	+	0	NA	intron (NM_003854, intron 11 of 11)	intron (NM_003854, intron 11 of 11)	48161	NM_001351446	8808		NM_003854	ENSG00000115598	IL1RL2	IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2	interleukin 1 receptor like 2	protein-coding
185711	chr5	132022771	132023130	+	0	NA	Intergenic	Intergenic	-10882	NM_001205250	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
164914	chr3	71142251	71142780	+	0	NA	intron (NM_001244810, intron 6 of 20)	MLT1E3|LTR|ERVL-MaLR	-10318	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
14313	chr1	143838451	143838750	+	0	NA	Intergenic	CpG	-36143	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
123860	chr19	55255571	55256480	+	0	NA	intron (NM_014931, intron 1 of 23)	L2b|LINE|L2	2992	NM_014931	22870		NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding
144368	chr20	35089771	35089930	+	0	NA	intron (NM_199368, intron 1 of 18)	AluSg|SINE|Alu	2957	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
221157	chr8	119833971	119834130	+	0	NA	TTS (NM_024094)	TTS (NM_024094)	-1209	NM_003184	6873		NM_003184	ENSG00000064313	TAF2	CIF150|MRT40|TAF2B|TAFII150	TATA-box binding protein associated factor 2	protein-coding
54756	chr12	94013901	94014100	+	0	NA	Intergenic	Intergenic	-70394	NR_135017	105369911		NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
218616	chr8	56071371	56071600	+	0	NA	intron (NM_001146227, intron 4 of 5)	intron (NM_001146227, intron 4 of 5)	2416	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
167128	chr3	127683521	127684030	+	0	NA	Intergenic	Intergenic	10823	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
59343	chr13	24586801	24587000	+	0	NA	intron (NR_002815, intron 3 of 8)	intron (NR_002815, intron 3 of 8)	6692	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
12928	chr1	110666401	110666600	+	0	NA	intron (NR_109845, intron 2 of 2)	L2|LINE|L2	5275	NR_109846	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
118110	chr19	34484121	34484580	+	0	NA	intron (NM_001080436, intron 1 of 7)	intron (NM_001080436, intron 1 of 7)	2592	NM_001080436	126374		NM_001080436	ENSG00000142279	WTIP	-	WT1 interacting protein	protein-coding
158190	chr22	50234821	50235680	+	0	NA	intron (NM_020461, intron 2 of 24)	intron (NM_020461, intron 2 of 24)	9773	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
173700	chr4	15681321	15682580	+	0	NA	intron (NM_001145191, intron 1 of 1)	CpG	123	NM_001145191	285550		NM_001145191	ENSG00000237765	FAM200B	C4orf53	family with sequence similarity 200 member B	protein-coding
219299	chr8	69942171	69942830	+	0	NA	Intergenic	Intergenic	-107522	NM_030958	81796		NM_030958	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15	solute carrier organic anion transporter family member 5A1	protein-coding
168440	chr3	142723451	142724900	+	0	NA	promoter-TSS (NM_003304)	promoter-TSS (NM_003304)	141	NM_001251845	7220		NM_003304	ENSG00000144935	TRPC1	HTRP-1|TRP1	transient receptor potential cation channel subfamily C member 1	protein-coding
85728	chr16	56643221	56644030	+	0	NA	promoter-TSS (NR_027781)	promoter-TSS (NR_027781)	-62	NR_027781	326343		NM_175620	ENSG00000291095	MT1DP	MTM	metallothionein 1D, pseudogene	pseudo
54083	chr12	76056721	76056980	+	0	NA	intron (NM_139207, intron 6 of 15)	AluSz|SINE|Alu	-25074	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
49980	chr12	42129571	42129930	+	0	NA	intron (NM_001099650, intron 1 of 6)	intron (NM_001099650, intron 1 of 6)	15124	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
134333	chr2	136109821	136110280	+	0	NA	Intergenic	MIR|SINE|MIR	6185	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
217100	chr8	24607751	24607850	+	0	NA	Intergenic	L2|LINE|L2	-59182	NR_125808	101929294		NR_125808		ADAM7-AS1	-	ADAM7, ADAMDEC1 and ADAM28 antisense RNA 1	ncRNA
208681	chr7	73230351	73230650	+	0	NA	intron (NR_003186, intron 4 of 7)	intron (NR_003186, intron 4 of 7)	9861	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
25502	chr10	7157171	7157330	+	0	NA	Intergenic	Intergenic	29534	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
222682	chr8	141251601	141251800	+	0	NA	intron (NM_001286646, intron 2 of 8)	Charlie4a|DNA|hAT-Charlie	-2867	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
180522	chr5	14423921	14424180	+	0	NA	intron (NR_134469, intron 34 of 56)	FRAM|SINE|Alu	-39933	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
202763	chr6	159048721	159049230	+	0	NA	Intergenic	Intergenic	-3823	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
117606	chr19	22107271	22107430	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	54866	NM_001316996	113835		NM_033468	ENSG00000197134	ZNF257	BMZF-4|BMZF4	zinc finger protein 257	protein-coding
30439	chr10	79064071	79064700	+	0	NA	intron (NR_024431, intron 3 of 9)	intron (NR_024431, intron 3 of 9)	3063	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
56655	chr12	119669301	119669830	+	0	NA	intron (NM_006253, intron 1 of 6)	intron (NM_006253, intron 1 of 6)	1432	NM_006253	5564		NM_006253	ENSG00000111725	PRKAB1	AMPK|HAMPKb	protein kinase AMP-activated non-catalytic subunit beta 1	protein-coding
99934	chr17	57132101	57132450	+	0	NA	Intergenic	Intergenic	36786	NM_001370427	8165		NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding
190002	chr5	177472511	177473300	+	0	NA	promoter-TSS (NM_080881)	promoter-TSS (NM_080881)	-35	NM_080881	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
29621	chr10	71770321	71770600	+	0	NA	intron (NM_022153, intron 1 of 6)	intron (NM_022153, intron 1 of 6)	3060	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
54276	chr12	89051021	89051400	+	0	NA	Intergenic	Intergenic	-31518	NR_038385	728084		NR_038385	ENSG00000246363	LINC02458	-	long intergenic non-protein coding RNA 2458	ncRNA
51241	chr12	50948771	50949030	+	0	NA	Intergenic	(GGAGGG)n|Simple_repeat|Simple_repeat	-3644	NM_001109619	613227		NM_001109619	ENSG00000214511	HIGD1C	GM921	HIG1 hypoxia inducible domain family member 1C	protein-coding
55249	chr12	101967521	101967950	+	0	NA	Intergenic	Intergenic	90155	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
38470	chr11	45801501	45802050	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-2297	NM_001145266	55343		NM_018389	ENSG00000181830	SLC35C1	CDG2C|FUCT1	solute carrier family 35 member C1	protein-coding
46613	chr11	128604001	128604200	+	0	NA	Intergenic	MIRc|SINE|MIR	-16542	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
185442	chr5	131250601	131251580	+	0	NA	Intergenic	Intergenic	-12963	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
189636	chr5	176043821	176044080	+	0	NA	Intergenic	Intergenic	18105	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
118069	chr19	34344921	34345180	+	0	NA	intron (NM_014686, intron 10 of 13)	AluY|SINE|Alu	-19690	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
200833	chr6	138006071	138006230	+	0	NA	Intergenic	Intergenic	-60350	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
117956	chr19	33260521	33261280	+	0	NA	Intergenic	Intergenic	-35050	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
201611	chr6	149370901	149371300	+	0	NA	intron (NM_001369506, intron 3 of 7)	intron (NM_001369506, intron 3 of 7)	-29162	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
89287	chr16	88695521	88695780	+	0	NA	TTS (NM_001171816)	TTS (NM_001171816)	7931	NM_001171816	115992		NM_178841	ENSG00000158717	RNF166	-	ring finger protein 166	protein-coding
17897	chr1	160097001	160097500	+	0	NA	intron (NM_052868, intron 1 of 6)	intron (NM_052868, intron 1 of 6)	1369	NM_052868	93185		NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
50983	chr12	49564771	49566680	+	0	NA	intron (NM_001278341, intron 1 of 12)	intron (NM_001278341, intron 1 of 12)	714	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
178878	chr4	155378301	155379650	+	0	NA	Intergenic	Intergenic	-2010	NM_001039580	79884		NM_024826	ENSG00000164114	MAP9	ASAP	microtubule associated protein 9	protein-coding
202664	chr6	158781421	158782300	+	0	NA	intron (NM_003379, intron 6 of 12)	AluJb|SINE|Alu	-17107	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
131781	chr2	98487751	98488500	+	0	NA	intron (NM_001351429, intron 1 of 23)	L1MC3|LINE|L1	42115	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
11944	chr1	93847101	93848250	+	0	NA	promoter-TSS (NM_001261408)	promoter-TSS (NM_001261408)	-456	NM_001261408	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
225347	chr9	34646271	34647830	+	0	NA	intron (NM_000155, intron 1 of 10)	intron (NM_000155, intron 1 of 10)	375	NM_000155	2592		NM_000155	ENSG00000213930	GALT	-	galactose-1-phosphate uridylyltransferase	protein-coding
27039	chr10	26958851	26959150	+	0	NA	Intergenic	L1PA11|LINE|L1	-16999	NR_026795	387644		NR_026795	ENSG00000290706	FAM238C	C10orf51|LINC00202|LINC00202-1|NCRNA00202|bB27G4.1	family with sequence similarity 238 member C	ncRNA
98523	chr17	47615701	47616330	+	0	NA	intron (NM_006310, intron 19 of 22)	intron (NM_006310, intron 19 of 22)	-33904	NM_002265	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
225223	chr9	34184651	34185050	+	0	NA	intron (NM_001171201, intron 1 of 5)	AluSc|SINE|Alu	5807	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
105672	chr18	2635951	2638050	+	0	NA	Intergenic	Intergenic	18395	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
232501	chr9	136263601	136264530	+	0	NA	intron (NM_001378188, intron 17 of 25)	intron (NM_001378188, intron 17 of 25)	-18253	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
203302	chr6	170082821	170083480	+	0	NA	Intergenic	Intergenic	-77492	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
211263	chr7	102683901	102684100	+	0	NA	intron (NR_146066, intron 9 of 11)	intron (NR_146066, intron 9 of 11)	-12265	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
77644	chr15	85490121	85490380	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	109647	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
216796	chr8	22547901	22548500	+	0	NA	Intergenic	Intergenic	-3727	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
95506	chr17	36463701	36464750	+	0	NA	Intergenic	CpG	-6691	NM_001355571	100510707		NM_001355571	ENSG00000274658	TBC1D3JP	TBC1D3J	TBC1 domain family member 3J, pseudogene	pseudo
218962	chr8	61138871	61139700	+	0	NA	Intergenic	CpG	-148685	NM_173519	157807		NM_173519	ENSG00000177182	CLVS1	C6orf212L|CRALBPL|RLBP1L1	clavesin 1	protein-coding
84700	chr16	30805321	30806380	+	0	NA	Intergenic	CpG	-18645	NM_001345970	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
163585	chr3	51963221	51963480	+	0	NA	promoter-TSS (NM_033010)	promoter-TSS (NM_033010)	-458	NM_033010	57060		NM_020418	ENSG00000090097	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding
204210	chr7	2516321	2516580	+	0	NA	intron (NM_001166355, intron 2 of 8)	intron (NM_001166355, intron 2 of 8)	-1413	NM_002304	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
138711	chr2	213132621	213132980	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	17637	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
191447	chr6	10693721	10695500	+	0	NA	promoter-TSS (NM_017906)	promoter-TSS (NM_017906)	-1	NM_001145020	347744		NM_001145020	ENSG00000137434	C6orf52	-	chromosome 6 open reading frame 52	protein-coding
57402	chr12	121827601	121828350	+	0	NA	exon (NM_001353345, exon 16 of 17)	exon (NM_001353345, exon 16 of 17)	23966	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
214494	chr7	150440001	150440430	+	0	NA	intron (NR_034033, intron 1 of 3)	L1MB7|LINE|L1	6561	NR_034033	285972		NR_034033	ENSG00000242258	LINC00996	-	long intergenic non-protein coding RNA 996	ncRNA
85183	chr16	46854021	46854280	+	0	NA	Intergenic	Intergenic	-22970	NR_145834	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
197051	chr6	53437371	53437880	+	0	NA	Intergenic	L2c|LINE|L2	-88446	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
193765	chr6	31349401	31350800	+	0	NA	Intergenic	MER4B|LTR|ERV1	5216	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
187899	chr5	148833021	148833600	+	0	NA	Intergenic	MIR3|SINE|MIR	6699	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
5400	chr1	25501721	25502500	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-41496	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
234932	chrX	37912321	37912600	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	-64889	NM_006520	6990		NM_006520	ENSG00000165169	DYNLT3	RP3|TCTE1L|TCTEX1L	dynein light chain Tctex-type 3	protein-coding
687	chr1	1387801	1388350	+	0	NA	intron (NM_001350500, intron 10 of 12)	intron (NM_001350500, intron 10 of 12)	10267	NM_001350497	81669		NM_030937	ENSG00000221978	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
144431	chr20	35449901	35450300	+	0	NA	intron (NM_001319138, intron 1 of 3)	AluSx1|SINE|Alu	3997	NR_031620	100302125		NR_031620	ENSG00000221763	MIR1289-1	MIRN1289-1|hsa-mir-1289-1	microRNA 1289-1	ncRNA
165147	chr3	71872771	71873250	+	0	NA	Intergenic	Intergenic	-87862	NM_021935	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
231115	chr9	129826271	129826700	+	0	NA	TTS (NM_016520)	TTS (NM_016520)	-2349	NM_000113	1861		NM_000113	ENSG00000136827	TOR1A	AMC5|DQ2|DYT1	torsin family 1 member A	protein-coding
193839	chr6	31528001	31528730	+	0	NA	promoter-TSS (NM_001011700).5	promoter-TSS (NM_001011700).5	-597	NM_001011700	401250		NM_001011700	ENSG00000204511	MCCD1	-	mitochondrial coiled-coil domain 1	protein-coding
216768	chr8	22492771	22493130	+	0	NA	intron (NM_005605, intron 3 of 13)	intron (NM_005605, intron 3 of 13)	51872	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
33146	chr10	112387951	112388450	+	0	NA	intron (NM_016234, intron 1 of 20)	AluSz6|SINE|Alu	12002	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
213512	chr7	139068251	139068350	+	0	NA	intron (NM_020119, intron 7 of 12)	AluSz|SINE|Alu	-24143	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
14235	chr1	143228601	143228900	+	0	NA	Intergenic	Intergenic	193842	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
220470	chr8	100437901	100439100	+	0	NA	Intergenic	Intergenic	55737	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
103754	chr17	78923171	78924330	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	1637	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
172112	chr4	1137451	1138050	+	0	NA	Intergenic	L1ME3A|LINE|L1	-14586	NR_033768	100379220		NR_033768	ENSG00000293496	TMED11P	p24a1|p24alpha1	transmembrane p24 trafficking protein 11, pseudogene	pseudo
154430	chr22	35346921	35347530	+	0	NA	non-coding (NR_024194, exon 15 of 15)	non-coding (NR_024194, exon 15 of 15)	-10426	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
66710	chr14	64337101	64337330	+	0	NA	intron (NM_001291712, intron 1 of 13)	MIRc|SINE|MIR	1335	NM_001291723	2100		NM_001437	ENSG00000140009	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8	estrogen receptor 2	protein-coding
104234	chr17	80703021	80703750	+	0	NA	intron (NM_020761, intron 3 of 33)	intron (NM_020761, intron 3 of 33)	102247	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
161965	chr3	46281801	46282200	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	39540	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
19638	chr1	180193721	180193980	+	0	NA	intron (NM_001004128, intron 10 of 12)	intron (NM_001004128, intron 10 of 12)	-36414	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
184818	chr5	111254421	111255380	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	30516	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
18491	chr1	161647421	161648080	+	0	NA	Intergenic	Intergenic	-15365	NM_004001	2213		NM_004001	ENSG00000072694	FCGR2B	CD32|CD32B|FCG2|FCGR2|FCGR2C|FcGRIIB|FcRII-c|FcgammaRIIb|IGFR2	Fc gamma receptor IIb	protein-coding
238185	chrX	136879931	136881480	+	0	NA	promoter-TSS (NR_028477)	promoter-TSS (NR_028477)	20	NM_001164803	27316		NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|MRXSG|MRXSH|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein X-linked	protein-coding
18805	chr1	167635371	167635850	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	5378	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
224748	chr9	21811671	21811830	+	0	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	9114	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
29570	chr10	71694321	71695150	+	0	NA	intron (NM_001171931, intron 20 of 24)	intron (NM_001171931, intron 20 of 24)	25043	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
5090	chr1	24742271	24742950	+	0	NA	Intergenic	Intergenic	-2837	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
41389	chr11	66006951	66007250	+	0	NA	Intergenic	Intergenic	4597	NM_003860	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
230880	chr9	129199971	129200330	+	0	NA	Intergenic	L2a|LINE|L2	-21889	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
31317	chr10	92698071	92698450	+	0	NA	Intergenic	Intergenic	8305	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
61075	chr13	48318571	48318930	+	0	NA	intron (NM_000321, intron 2 of 26)	CpG	14999	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
45381	chr11	118311251	118311800	+	0	NA	intron (NM_000733, intron 4 of 8)	intron (NM_000733, intron 4 of 8)	6795	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
91648	chr17	5483421	5483830	+	0	NA	intron (NR_130906, intron 2 of 5)	intron (NR_130906, intron 2 of 5)	2553	NR_130906	51009		NM_016041	ENSG00000072849	DERL2	CGI-101|DERtrin-2|F-LAN-1|F-LANa|FLANa|derlin-2	derlin 2	protein-coding
134039	chr2	131103951	131106780	+	0	NA	5' UTR (NM_001309452, exon 1 of 9)	5' UTR (NM_001309452, exon 1 of 9)	518	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
204037	chr7	1935251	1935350	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	5271	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
103903	chr17	79807521	79808030	+	0	NA	Intergenic	MIRb|SINE|MIR	-10698	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
35450	chr11	1455151	1456080	+	0	NA	intron (NM_001256630, intron 16 of 19)	intron (NM_001256630, intron 16 of 19)	25271	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
189114	chr5	170393021	170393580	+	0	NA	intron (NR_109899, intron 1 of 2)	X7C_LINE|LINE|CR1	3807	NR_109899	101928033		NR_109899	ENSG00000253647	KCNIP1-OT1	CTD-2270F17.1	KCNIP1 overlapping transcript 1	ncRNA
10812	chr1	77825451	77825550	+	0	NA	intron (NM_001363586, intron 7 of 15)	intron (NM_001363586, intron 7 of 15)	45695	NM_001363586	374986		NM_198549	ENSG00000180488	MIGA1	FAM73A	mitoguardin 1	protein-coding
161851	chr3	45741471	45741930	+	0	NA	intron (NM_001319073, intron 20 of 20)	intron (NM_001319073, intron 20 of 20)	52304	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
8510	chr1	40884051	40884750	+	0	NA	Intergenic	CpG	-22037	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
118363	chr19	35701271	35701430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3208	NM_001316902	27033		NM_014383	ENSG00000011590	ZBTB32	FAXF|FAZF|Rog|TZFP|ZNF538|mynn	zinc finger and BTB domain containing 32	protein-coding
70600	chr14	102785901	102786180	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	8561	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
43124	chr11	75246951	75247250	+	0	NA	Intergenic	Intergenic	6326	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
68596	chr14	89541151	89541450	+	0	NA	intron (NM_001085471, intron 1 of 6)	MER41A|LTR|ERV1	-34916	NR_024620	29018		NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
103653	chr17	78768851	78769900	+	0	NA	intron (NM_017456, intron 1 of 12)	L2c|LINE|L2	12833	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
104380	chr17	81029021	81029280	+	0	NA	TTS (NR_026857)	TTS (NR_026857)	5569	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
150722	chr21	43738651	43739050	+	0	NA	intron (NM_003681, intron 2 of 10)	LTR14|LTR|ERVK	-2636	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
144223	chr20	34374671	34375030	+	0	NA	intron (NM_031483, intron 2 of 24)	AluSq|SINE|Alu	11577	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
64109	chr14	22818001	22818550	+	0	NA	intron (NM_001126106, intron 1 of 10)	intron (NM_001126106, intron 1 of 10)	1516	NM_001126106	9056		NM_003982	ENSG00000155465	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	solute carrier family 7 member 7	protein-coding
13673	chr1	116568521	116568880	+	0	NA	intron (NR_026665, intron 1 of 5)	MIR|SINE|MIR	2326	NR_026665	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
93490	chr17	18960571	18961500	+	0	NA	intron (NM_152351, intron 5 of 14)	intron (NM_152351, intron 5 of 14)	8870	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
219026	chr8	64686001	64686400	+	0	NA	intron (NM_004820, intron 1 of 5)	SVA_F|Retroposon|SVA	-104308	NR_152770	401463		NR_015374	ENSG00000254102	BHLHE22-AS1	-	BHLHE22 antisense RNA 1	ncRNA
99770	chr17	51112351	51112950	+	0	NA	intron (NM_001130527, intron 1 of 29)	AluSc|SINE|Alu	8218	NM_001130527	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
235692	chrX	48726301	48726930	+	0	NA	Intergenic	Intergenic	29881	NM_003173	6839		NM_003173	ENSG00000101945	SUV39H1	H3-K9-HMTase 1|KMT1A|MG44|SUV39H	SUV39H1 histone lysine methyltransferase	protein-coding
170161	chr3	183554151	183554800	+	0	NA	intron (NM_130446, intron 1 of 6)	MIRb|SINE|MIR	1231	NM_130446	89857		NM_130446	ENSG00000172578	KLHL6	-	kelch like family member 6	protein-coding
178600	chr4	151990901	151991400	+	0	NA	Intergenic	Intergenic	-109603	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
213716	chr7	140262451	140262750	+	0	NA	Intergenic	AluJo|SINE|Alu	85339	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
15280	chr1	149748251	149748350	+	0	NA	Intergenic	tRNA-Glu-GAA|tRNA|tRNA	-34394	NR_166122	2209		NM_000566	ENSG00000150337	FCGR1A	CD64|CD64A|FCG1|FCGR1|FCRI|FcgammaRI|IGFR1	Fc gamma receptor Ia	protein-coding
26077	chr10	13105171	13105730	+	0	NA	intron (NM_021980, intron 1 of 13)	MIR3|SINE|MIR	5287	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
144347	chr20	34999871	35000280	+	0	NA	intron (NM_020884, intron 38 of 44)	MIRb|SINE|MIR	-9603	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
152908	chr22	22756721	22757450	+	0	NA	Intergenic	Intergenic	-65691	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
114862	chr19	13863221	13863530	+	0	NA	intron (NR_146095, intron 1 of 1)	AluJr|SINE|Alu	1339	NR_146095	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
68981	chr14	91463351	91463650	+	0	NA	intron (NR_158976, intron 13 of 16)	AluJr|SINE|Alu	-45680	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
87956	chr16	79632371	79632530	+	0	NA	Intergenic	L2c|LINE|L2	-31713	NM_001031804	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
140849	chr2	237156221	237156550	+	0	NA	Intergenic	Intergenic	70496	NM_006710	10920		NM_006710	ENSG00000198612	COPS8	COP9|CSN8|SGN8	COP9 signalosome subunit 8	protein-coding
71064	chr14	104821421	104821680	+	0	NA	non-coding (NR_024396, exon 1 of 1)	non-coding (NR_024396, exon 1 of 1)	349	NR_024396	196872		NM_152646	ENSG00000258701	VESTAR	LINC00638	VEGFC mRNA stability associated lncRNA	ncRNA
237382	chrX	119467701	119468700	+	0	NA	promoter-TSS (NM_001152)	promoter-TSS (NM_001152)	62	NR_134915	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
34987	chr11	515601	515900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8508	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
44919	chr11	115500971	115501330	+	0	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	3265	NM_001301045	23705		NM_014333	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
142527	chr20	4999771	4999930	+	0	NA	intron (NM_203327, intron 1 of 16)	intron (NM_203327, intron 1 of 16)	1660	NM_005116	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
8831	chr1	43057651	43057950	+	0	NA	Intergenic	(GGTGAT)n|Simple_repeat|Simple_repeat	-90104	NM_001101376	440585		NM_001101376	ENSG00000186973	CFAP144	FAM183A	cilia and flagella associated protein 144	protein-coding
89549	chr16	89216021	89216900	+	0	NA	Intergenic	LTR55|LTR|ERVL?	-1243	NR_037705	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
93465	chr17	18785251	18785350	+	0	NA	intron (NM_001316919, intron 1 of 6)	L2|LINE|L2	-3735	NM_001316920	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
151724	chr22	17760251	17760550	+	0	NA	intron (NM_001244567, intron 1 of 5)	AluSx1|SINE|Alu	3859	NR_036168	100423025		NR_036168	ENSG00000264757	MIR3198-1	MIR3198|mir-3198-1	microRNA 3198-1	ncRNA
187877	chr5	148731001	148731900	+	0	NA	Intergenic	HAL1b|LINE|L1	-76923	NM_000870	3360		NM_000870	ENSG00000164270	HTR4	5-HT4|5-HT4R	5-hydroxytryptamine receptor 4	protein-coding
198307	chr6	100479421	100479700	+	0	NA	Intergenic	Intergenic	-14639	NM_005068	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
178950	chr4	159103701	159105080	+	0	NA	intron (NM_001351724, intron 1 of 30)	intron (NM_001351724, intron 1 of 30)	339	NM_001351724	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
174010	chr4	26372551	26373250	+	0	NA	intron (NM_203284, intron 2 of 11)	intron (NM_203284, intron 2 of 11)	29760	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
27487	chr10	32150601	32151200	+	0	NA	Intergenic	Intergenic	-94475	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
152658	chr22	21570871	21571750	+	0	NA	intron (NR_046082, intron 1 of 3)	intron (NR_046082, intron 1 of 3)	3596	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
55587	chr12	106462571	106462750	+	0	NA	intron (NM_018082, intron 22 of 27)	L2b|LINE|L2	104578	NM_001160708	55703		NM_018082	ENSG00000013503	POLR3B	C128|CMT1I|HLD8|INMAP|RPC2	RNA polymerase III subunit B	protein-coding
76660	chr15	75683321	75684250	+	0	NA	intron (NM_001897, intron 5 of 9)	intron (NM_001897, intron 5 of 9)	29063	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
126842	chr2	31324351	31325180	+	0	NA	Intergenic	L1MEd|LINE|L1	89977	NM_000379	7498		NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
61820	chr13	75756971	75757530	+	0	NA	intron (NM_001306080, intron 3 of 30)	MLT1F|LTR|ERVL-MaLR	-3070	NM_001366633	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
223159	chr8	143535471	143535630	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	5897	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
107930	chr18	57666021	57666480	+	0	NA	intron (NM_001374385, intron 20 of 27)	intron (NM_001374385, intron 20 of 27)	35919	NR_164148	100505549		NR_164148	ENSG00000267040	ATP8B1-AS1	-	ATP8B1 antisense RNA 1	ncRNA
163053	chr3	49918171	49918600	+	0	NA	intron (NM_032355, intron 1 of 5)	L2a|LINE|L2	11627	NM_032355	84315		NM_032355	ENSG00000164077	MON1A	SAND1	MON1 homolog A, secretory trafficking associated	protein-coding
159632	chr3	15297071	15297430	+	0	NA	intron (NM_004844, intron 3 of 8)	intron (NM_004844, intron 3 of 8)	35336	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
161300	chr3	39381701	39382180	+	0	NA	Intergenic	Intergenic	-1430	NM_001354798	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
155446	chr22	38467801	38468680	+	0	NA	exon (NM_016657, exon 1 of 4)	exon (NM_016657, exon 1 of 4)	144	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
109849	chr19	1213851	1214830	+	0	NA	intron (NM_000455, intron 1 of 9)	intron (NM_000455, intron 1 of 9)	8562	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
90654	chr17	1677221	1677680	+	0	NA	intron (NM_006445, intron 14 of 42)	intron (NM_006445, intron 14 of 42)	7417	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
5696	chr1	26369601	26369800	+	0	NA	intron (NM_001114759, intron 1 of 5)	AluJb|SINE|Alu	3050	NM_001114759	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
68792	chr14	91227121	91227670	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	17309	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
76695	chr15	75750521	75750780	+	0	NA	Intergenic	Intergenic	-10573	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
30087	chr10	73910801	73912400	+	0	NA	exon (NM_002658, exon 2 of 11)	exon (NM_002658, exon 2 of 11)	468	NM_001319191	5328		NM_002658	ENSG00000122861	PLAU	ATF|BDPLT5|QPD|UPA|URK|u-PA	plasminogen activator, urokinase	protein-coding
151623	chr22	12693401	12693830	+	0	NA	Intergenic	Intergenic	796209	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
40019	chr11	62667571	62667950	+	0	NA	3' UTR (NM_001043229, exon 3 of 3)	3' UTR (NM_001043229, exon 3 of 3)	2338	NR_004390	692158		NR_004390	ENSG00000206597	SNORA57	U99	small nucleolar RNA, H/ACA box 57	snoRNA
29329	chr10	69405601	69406050	+	0	NA	intron (NM_001057, intron 4 of 4)	intron (NM_001057, intron 4 of 4)	11093	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
167804	chr3	133572521	133575750	+	0	NA	promoter-TSS (NM_001134423)	promoter-TSS (NM_001134423)	-299	NM_001134423	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
150526	chr21	42960121	42960380	+	0	NA	Intergenic	AluSx|SINE|Alu	-9236	NR_049889	100847013		NR_049889	ENSG00000264580	MIR5692B	-	microRNA 5692b	ncRNA
47122	chr12	685221	686550	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-22440	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
112420	chr19	6237851	6238550	+	0	NA	intron (NM_005934, intron 3 of 11)	intron (NM_005934, intron 3 of 11)	41775	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
28723	chr10	61902301	61903100	+	0	NA	intron (NM_032199, intron 2 of 9)	(TG)n|Simple_repeat|Simple_repeat	1001	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
221100	chr8	117654051	117654230	+	0	NA	Intergenic	Intergenic	133427	NM_080651	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
162267	chr3	47298021	47298880	+	0	NA	intron (NM_025010, intron 1 of 9)	intron (NM_025010, intron 1 of 9)	15506	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
7924	chr1	37491401	37491600	+	0	NA	non-coding (NR_073090, exon 9 of 9)	non-coding (NR_073090, exon 9 of 9)	9494	NR_049844	100847010		NR_049844	ENSG00000263675	MIR5581	-	microRNA 5581	ncRNA
124086	chr19	55634171	55636450	+	0	NA	Intergenic	Intergenic	-5692	NM_207115	51157		NM_016202	ENSG00000213015	ZNF580	-	zinc finger protein 580	protein-coding
207914	chr7	50632621	50633180	+	0	NA	intron (NM_001371008, intron 4 of 15)	L1PB4|LINE|L1	-67495	NM_001082971	1644		NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
174237	chr4	37889201	37889400	+	0	NA	Intergenic	MIRb|SINE|MIR	-1784	NM_015173	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
121606	chr19	47415801	47416000	+	0	NA	intron (NM_001009813, intron 4 of 12)	AluJr|SINE|Alu	3627	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
163359	chr3	50452051	50452350	+	0	NA	intron (NM_006030, intron 2 of 37)	LTR16|LTR|ERVL	51434	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
25706	chr10	8988571	8988930	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	90761	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
45689	chr11	119054001	119054330	+	0	NA	exon (NM_001130991, exon 8 of 26).2	exon (NM_001130991, exon 8 of 26).2	3040	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
35617	chr11	1777321	1777580	+	0	NA	Intergenic	Intergenic	-13523	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
41681	chr11	66622071	66622450	+	0	NA	intron (NM_001198846, intron 1 of 1)	AluSx|SINE|Alu	5630	NM_006328	10432		NM_006328	ENSG00000239306	RBM14	COAA|PSP2|SIP|SYTIP1|TMEM137	RNA binding motif protein 14	protein-coding
213133	chr7	131367351	131367850	+	0	NA	intron (NM_001321316, intron 1 of 17)	intron (NM_001321316, intron 1 of 17)	39724	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
145748	chr20	45098471	45099150	+	0	NA	intron (NM_002251, intron 3 of 4)	intron (NM_002251, intron 3 of 4)	2317	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
120503	chr19	44784301	44784900	+	0	NA	intron (NM_012116, intron 5 of 10)	MER91B|DNA|hAT-Tip100	6710	NM_012116	23624		NM_012116	ENSG00000142273	CBLC	CBL-3|CBL-SL|RNF57	Cbl proto-oncogene C	protein-coding
173757	chr4	16264801	16265030	+	0	NA	Intergenic	Intergenic	38252	NR_027696	202020		NM_152684	ENSG00000263327	TAPT1-AS1	-	TAPT1 antisense RNA 1 (head to head)	ncRNA
95348	chr17	35810751	35811050	+	0	NA	intron (NM_139215, intron 1 of 15).2	intron (NM_139215, intron 1 of 15).2	1416	NM_003487	8148		NM_003487	ENSG00000270647	TAF15	Npl3|RBP56|TAF2N|TAFII68	TATA-box binding protein associated factor 15	protein-coding
78932	chr15	101250221	101250480	+	0	NA	intron (NM_014918, intron 1 of 2)	intron (NM_014918, intron 1 of 2)	1698	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
180726	chr5	31531471	31533200	+	0	NA	promoter-TSS (NM_018356)	promoter-TSS (NM_018356)	34	NM_018356	55322		NM_018356	ENSG00000082213	C5orf22	-	chromosome 5 open reading frame 22	protein-coding
204128	chr7	2346751	2346850	+	0	NA	Intergenic	AluJb|SINE|Alu	-7286	NM_001362792	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
172533	chr4	2334751	2334850	+	0	NA	intron (NM_001172657, intron 6 of 6)	intron (NM_001172657, intron 6 of 6)	30014	NM_001172660	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
137983	chr2	201223051	201223750	+	0	NA	intron (NM_001206542, intron 7 of 7)	intron (NM_001206542, intron 7 of 7)	-10043	NM_001228	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
121956	chr19	48475271	48475430	+	0	NA	intron (NM_017457, intron 8 of 11)	intron (NM_017457, intron 8 of 11)	5981	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
97068	chr17	42380171	42381030	+	0	NA	intron (NM_001369516, intron 1 of 23)	AluSx1|SINE|Alu	7842	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
164563	chr3	63996201	63996400	+	0	NA	exon (NM_001128149, exon 8 of 9)	exon (NM_001128149, exon 8 of 9)	-7722	NR_038286	100507062		NR_038286	ENSG00000239653	PSMD6-AS2	-	PSMD6 antisense RNA 2	ncRNA
193476	chr6	30537051	30537550	+	0	NA	Intergenic	AluJb|SINE|Alu	-19409	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
239525	chrY	56850451	56850950	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-103555	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
21920	chr1	207838621	207839530	+	0	NA	Intergenic	Intergenic	-16372	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
59384	chr13	24922501	24923700	+	0	NA	promoter-TSS (NM_018451)	promoter-TSS (NM_018451)	-239	NR_047595	55835		NM_018451	ENSG00000151849	CENPJ	BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4	centromere protein J	protein-coding
14058	chr1	120776501	120777330	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-28641	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
194783	chr6	34179371	34179530	+	0	NA	Intergenic	MER52D|LTR|ERV1	-23828	NM_001256809	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
82829	chr16	21495521	21496000	+	0	NA	intron (NR_027155, intron 1 of 28)	AluSz6|SINE|Alu	-5766	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
137212	chr2	191244851	191246200	+	0	NA	5' UTR (NM_012223, exon 1 of 29)	5' UTR (NM_012223, exon 1 of 29)	121	NM_001330238	4430		NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
12874	chr1	110201571	110201950	+	0	NA	3' UTR (NM_001010898, exon 12 of 12)	3' UTR (NM_001010898, exon 12 of 12)	8227	NR_046546	100873974		NR_046546		KCNC4-DT	KCNC4-AS1|LINC02586	KCNC4 divergent transcript	ncRNA
95702	chr17	38485671	38486350	+	0	NA	intron (NM_001199417, intron 16 of 23).2	(GGCCTG)n|Simple_repeat|Simple_repeat	57546	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
209824	chr7	88217601	88218390	+	0	NA	intron (NM_001256892, intron 2 of 6)	intron (NM_001256892, intron 2 of 6)	1335	NR_120517	102723885		NR_120517		SRI-AS1	-	SRI antisense RNA 1	ncRNA
73642	chr15	44679101	44679480	+	0	NA	Intergenic	AluSx|SINE|Alu	-2402	NM_001145112	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
28881	chr10	62755571	62756680	+	0	NA	Intergenic	Intergenic	-48595	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
4734	chr1	23367321	23370330	+	0	NA	promoter-TSS (NR_033690)	promoter-TSS (NR_033690)	-146	NR_033690	148898		NM_138479	ENSG00000249087	ZNF436-AS1	C1orf213	ZNF436 antisense RNA 1	ncRNA
188070	chr5	150081871	150082250	+	0	NA	intron (NR_164679, intron 1 of 19)	intron (NR_164679, intron 1 of 19)	4494	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
96031	chr17	39404721	39405650	+	0	NA	3' UTR (NM_004774, exon 17 of 17)	3' UTR (NM_004774, exon 17 of 17)	-2629	NM_001370209	84961		NM_032875	ENSG00000108306	FBXL20	Fbl2|Fbl20	F-box and leucine rich repeat protein 20	protein-coding
227263	chr9	89364401	89364900	+	0	NA	intron (NR_163887, intron 13 of 15)	intron (NR_163887, intron 13 of 15)	45799	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
86119	chr16	57668851	57668950	+	0	NA	intron (NM_170776, intron 1 of 11)	intron (NM_170776, intron 1 of 11)	594	NM_001308360	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
22045	chr1	210582421	210582680	+	0	NA	intron (NM_018194, intron 9 of 11).2	intron (NM_018194, intron 9 of 11).2	253184	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
90333	chr17	1176401	1176600	+	0	NA	intron (NM_001322841, intron 1 of 22)	MIRb|SINE|MIR	3481	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
152371	chr22	20509251	20510350	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	1753	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
225431	chr9	35072201	35073500	+	0	NA	promoter-TSS (NM_007126)	promoter-TSS (NM_007126)	-182	NM_001354927	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
181524	chr5	43045151	43045850	+	0	NA	TTS (NR_015447)	TTS (NR_015447)	-2253	NM_001382352	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
216592	chr8	22042001	22042200	+	0	NA	promoter-TSS (NM_003867)	promoter-TSS (NM_003867)	-653	NM_001304478	8822		NM_003867	ENSG00000158815	FGF17	FGF-13|FGF-17|HH20	fibroblast growth factor 17	protein-coding
142845	chr20	17580701	17581120	+	0	NA	intron (NM_006870, intron 1 of 3)	L2a|LINE|L2	10835	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
191004	chr6	3070551	3070650	+	0	NA	intron (NM_001354934, intron 1 of 11)	AluSg|SINE|Alu	2106	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
194684	chr6	33682321	33682580	+	0	NA	intron (NM_002224, intron 33 of 57)	intron (NM_002224, intron 33 of 57)	-15678	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
28188	chr10	44386301	44386730	+	0	NA	Intergenic	CpG-2852	-1418	NM_000609	6387		NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1	C-X-C motif chemokine ligand 12	protein-coding
142370	chr20	3795551	3797000	+	0	NA	5' UTR (NM_021873, exon 1 of 16)	5' UTR (NM_021873, exon 1 of 16)	536	NR_136335	994		NM_004358	ENSG00000101224	CDC25B	-	cell division cycle 25B	protein-coding
10958	chr1	84181001	84181400	+	0	NA	promoter-TSS (NM_001242862)	promoter-TSS (NM_001242862)	-432	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
4506	chr1	21703301	21703580	+	0	NA	intron (NM_001350166, intron 21 of 26)	intron (NM_001350166, intron 21 of 26)	-34083	NM_001350524	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
53404	chr12	64723701	64724280	+	0	NA	intron (NM_002076, intron 10 of 13)	L2|LINE|L2	35416	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
191331	chr6	7087571	7088280	+	0	NA	Intergenic	Intergenic	-19818	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
165072	chr3	71463521	71464380	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	78139	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
138832	chr2	216411951	216413250	+	0	NA	promoter-TSS (NM_001127207)	promoter-TSS (NM_001127207)	116	NM_014140	50485		NM_014140	ENSG00000138375	SMARCAL1	HARP|HHARP	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1	protein-coding
11983	chr1	94541571	94542150	+	0	NA	promoter-TSS (NM_001178096)	promoter-TSS (NM_001178096)	-3	NM_001178096	2152		NM_001993	ENSG00000117525	F3	CD142|TF|TFA	coagulation factor III, tissue factor	protein-coding
35952	chr11	2693921	2694580	+	0	NA	non-coding (NR_002728, exon 1 of 1)	non-coding (NR_002728, exon 1 of 1)	5748	NR_002728	10984		NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1	ncRNA
167210	chr3	128426201	128427530	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-36729	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
119938	chr19	41864501	41865100	+	0	NA	intron (NM_001321485, intron 3 of 5)	intron (NM_001321485, intron 3 of 5)	4396	NM_001321483	6223		NM_001022	ENSG00000105372	RPS19	DBA|DBA1|LOH19CR1|S19|eS19	ribosomal protein S19	protein-coding
50944	chr12	49371051	49371550	+	0	NA	intron (NR_120663, intron 2 of 14)	L1MB3|LINE|L1	3838	NM_001293286	65244		NM_023071	ENSG00000123352	SPATS2	Nbla00526|P59SCR|SCR59|SPATA10	spermatogenesis associated serine rich 2	protein-coding
152877	chr22	22586921	22587200	+	0	NA	Intergenic	Intergenic	-27699	NM_206955	23532		NM_006115	ENSG00000185686	PRAME	CT130|MAPE|OIP-4|OIP4	PRAME nuclear receptor transcriptional regulator	protein-coding
61569	chr13	71289951	71290380	+	0	NA	Intergenic	LTR12|LTR|ERV1	275024	NR_047699	100885781		NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA
187658	chr5	143182101	143182300	+	0	NA	intron (NM_001349547, intron 20 of 21)	intron (NM_001349547, intron 20 of 21)	-10300	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
80696	chr16	3055851	3055950	+	0	NA	non-coding (NR_123723, exon 3 of 5)	non-coding (NR_123723, exon 3 of 5)	3470	NR_123723	100507419		NR_123723		MMP25-AS1	-	MMP25 antisense RNA 1	ncRNA
65561	chr14	51938521	51938980	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-20179	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
118228	chr19	35203621	35204280	+	0	NA	Intergenic	Intergenic	24775	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
2807	chr1	10965521	10966180	+	0	NA	intron (NM_001366227, intron 2 of 10)	intron (NM_001366227, intron 2 of 10)	837	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
231754	chr9	132168301	132169100	+	0	NA	intron (NM_032536, intron 2 of 7)	intron (NM_032536, intron 2 of 7)	6642	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
109876	chr19	1247651	1248700	+	0	NA	promoter-TSS (NM_177401)	promoter-TSS (NM_177401)	-378	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
77683	chr15	85623421	85623950	+	0	NA	intron (NM_001270546, intron 1 of 28)	intron (NM_001270546, intron 1 of 28)	3735	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
232628	chr9	136450971	136451130	+	0	NA	intron (NM_014866, intron 23 of 31)	intron (NM_014866, intron 23 of 31)	-11205	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
108753	chr18	77117651	77118230	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	14843	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
178422	chr4	147780621	147781330	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	-1620	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
177634	chr4	121195801	121196000	+	0	NA	intron (NM_001128843, intron 2 of 12)	intron (NM_001128843, intron 2 of 12)	20727	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
236175	chrX	65581921	65582250	+	0	NA	Intergenic	Intergenic	-29664	NR_033742	83957		NM_032033	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
29099	chr10	68302221	68302580	+	0	NA	intron (NM_001033083, intron 2 of 8)	intron (NM_001033083, intron 2 of 8)	-29293	NM_001322438	3189		NM_012207	ENSG00000096746	HNRNPH3	2H9|HNRPH3	heterogeneous nuclear ribonucleoprotein H3	protein-coding
86317	chr16	61782551	61782650	+	0	NA	intron (NM_001796, intron 8 of 11)	L1PA2|LINE|L1	253838	NM_001796	1006		NM_001796	ENSG00000150394	CDH8	Nbla04261	cadherin 8	protein-coding
155479	chr22	38497771	38498750	+	0	NA	intron (NM_006386, intron 4 of 12)	intron (NM_006386, intron 4 of 12)	8051	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
14126	chr1	120947321	120947780	+	0	NA	intron (NR_109754, intron 1 of 2)	AluSg4|SINE|Alu	4950	NR_104073	101954264		NR_104073	ENSG00000277610	RNVU1-4	RNU1-102|RNU1-50|RNVU1-5|vU1.4|vU1.5	RNA, variant U1 small nuclear 4	snRNA
19837	chr1	182873051	182873150	+	0	NA	intron (NM_001357, intron 15 of 27)	AluJb|SINE|Alu	-33509	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
103115	chr17	77372071	77374000	+	0	NA	promoter-TSS (NM_001113493)	promoter-TSS (NM_001113493)	-302	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
85144	chr16	46386251	46388300	+	0	NA	Intergenic	Intergenic	181822	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
191837	chr6	14910651	14911030	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	-335229	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
187908	chr5	148839951	148840530	+	0	NA	Intergenic	Intergenic	13629	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
18780	chr1	167518401	167519450	+	0	NA	promoter-TSS (NM_001378516)	promoter-TSS (NM_001378516)	-396	NM_198053	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
222339	chr8	133531471	133532280	+	0	NA	intron (NM_173344, intron 2 of 9)	Charlie1b|DNA|hAT-Charlie	40012	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
160135	chr3	20054451	20055750	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	14654	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
212059	chr7	114982551	114982850	+	0	NA	intron (NM_199072, intron 4 of 4)	AluJr4|SINE|Alu	60546	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
939	chr1	1730271	1730850	+	0	NA	3' UTR (NM_182838, exon 6 of 6)	3' UTR (NM_182838, exon 6 of 6)	-6203	NM_001313982	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
61738	chr13	74137371	74137530	+	0	NA	Intergenic	Intergenic	-3521	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
224767	chr9	21991171	21991480	+	0	NA	intron (NM_001363763, intron 1 of 2)	MER30|DNA|hAT-Charlie	3067	NM_058195	1029		NM_000077	ENSG00000147889	CDKN2A	ARF|CAI2|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
60036	chr13	32647021	32647400	+	0	NA	intron (NM_015032, intron 1 of 34)	intron (NM_015032, intron 1 of 34)	60758	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
54044	chr12	75815151	75815850	+	0	NA	Intergenic	Intergenic	216276	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
112602	chr19	6732701	6732900	+	0	NA	intron (NM_020171, intron 10 of 17)	intron (NM_020171, intron 10 of 17)	3978	NR_106849	102465474		NR_106849	ENSG00000283950	MIR6791	hsa-mir-6791	microRNA 6791	ncRNA
197287	chr6	71012871	71013100	+	0	NA	Intergenic	Intergenic	-55925	NM_080742	135152		NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
135070	chr2	156478701	156478900	+	0	NA	intron (NM_000408, intron 2 of 16)	intron (NM_000408, intron 2 of 16)	42421	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
108654	chr18	76721071	76722530	+	0	NA	Intergenic	LTR81B|LTR|Gypsy	31771	NR_122073	400661		NR_122073	ENSG00000276397	LINC01879	-	long intergenic non-protein coding RNA 1879	ncRNA
168830	chr3	152246851	152247230	+	0	NA	intron (NM_001376839, intron 2 of 10)	intron (NM_001376839, intron 2 of 10)	3408	NM_001376819	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
15466	chr1	150354671	150354830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-9361	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
127180	chr2	38379921	38380830	+	0	NA	Intergenic	Intergenic	-1791	NM_001330462	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
97994	chr17	45288001	45288200	+	0	NA	intron (NM_003954, intron 3 of 15)	intron (NM_003954, intron 3 of 15)	-26006	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
235918	chrX	53086821	53087740	+	0	NA	intron (NM_022117, intron 6 of 6)	intron (NM_022117, intron 6 of 6)	4913	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
227686	chr9	93002851	93002950	+	0	NA	intron (NM_001369951, intron 3 of 17)	intron (NM_001369951, intron 3 of 17)	12044	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
23581	chr1	229554971	229555200	+	0	NA	intron (NM_012089, intron 1 of 12)	intron (NM_012089, intron 1 of 12)	3622	NM_012089	23456		NM_012089	ENSG00000135776	ABCB10	EST20237|M-ABC2|MTABC2	ATP binding cassette subfamily B member 10	protein-coding
231653	chr9	131651501	131652250	+	0	NA	promoter-TSS (NM_001377936)	promoter-TSS (NM_001377936)	-472	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
91847	chr17	7210701	7211730	+	0	NA	intron (NR_135527, intron 3 of 20)	intron (NR_135527, intron 3 of 20)	-3944	NM_001369566	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
175290	chr4	67575401	67576000	+	0	NA	intron (NM_012108, intron 3 of 8)	intron (NM_012108, intron 3 of 8)	16973	NM_001317769	26228		NM_012108	ENSG00000035720	STAP1	BRDG1|STAP-1	signal transducing adaptor family member 1	protein-coding
238202	chrX	137234921	137235180	+	0	NA	Intergenic	Intergenic	-201055	NM_054021	83550		NM_054021	ENSG00000165370	GPR101	GPCR6|PAGH2|PITA2	G protein-coupled receptor 101	protein-coding
19014	chr1	169625901	169626100	+	0	NA	intron (NM_003005, intron 1 of 16)	L2a|LINE|L2	4124	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
230556	chr9	128423651	128423750	+	0	NA	intron (NM_016174, intron 3 of 12)	intron (NM_016174, intron 3 of 12)	2843	NM_016174	51148		NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
191496	chr6	11228451	11228750	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	4068	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
205523	chr7	18496171	18496330	+	0	NA	promoter-TSS (NM_058176)	promoter-TSS (NM_058176)	-12	NM_058176	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
113364	chr19	8742021	8742680	+	0	NA	Intergenic	L1MD|LINE|L1	11396	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
140876	chr2	237581551	237582050	+	0	NA	intron (NM_022449, intron 2 of 5)	intron (NM_022449, intron 2 of 5)	8934	NR_033308	64284		NM_022449	ENSG00000124839	RAB17	-	RAB17, member RAS oncogene family	protein-coding
65292	chr14	50056021	50056480	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	-48730	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
189755	chr5	176621471	176621630	+	0	NA	intron (NM_003085, intron 4 of 5)	intron (NM_003085, intron 4 of 5)	7950	NR_036239	100422962		NR_036239	ENSG00000266329	MIR4281	-	microRNA 4281	ncRNA
108904	chr18	79429121	79429380	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	28951	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
206358	chr7	30479401	30480750	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-1209	NR_149002	10392		NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1|hNod1	nucleotide binding oligomerization domain containing 1	protein-coding
112952	chr19	7774871	7775150	+	0	NA	Intergenic	L1MD3|LINE|L1	11767	NR_026709	10332		NM_014257	ENSG00000104938	CLEC4M	CD209L|CD299|DC-SIGN2|DC-SIGNR|DCSIGNR|HP10347|L-SIGN|LSIGN	C-type lectin domain family 4 member M	protein-coding
224510	chr9	19098701	19098900	+	0	NA	intron (NM_017645, intron 1 of 16)	AluSp|SINE|Alu	4104	NM_017645	54801		NM_017645	ENSG00000147874	HAUS6	Dgt6|FAM29A	HAUS augmin like complex subunit 6	protein-coding
216747	chr8	22461501	22461700	+	0	NA	intron (NM_005605, intron 1 of 13)	MER90a|LTR|ERV1	20522	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
54552	chr12	92158001	92158200	+	0	NA	intron (NR_135037, intron 3 of 3)	L1MB8|LINE|L1	12015	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
231903	chr9	133086601	133087000	+	0	NA	non-coding (NR_001275, exon 5 of 5)	non-coding (NR_001275, exon 5 of 5)	4261	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
165168	chr3	72345621	72345880	+	0	NA	Intergenic	L2c|LINE|L2	100873	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
58967	chr13	19853671	19854030	+	0	NA	intron (NM_001039649, intron 2 of 4)	AluSx|SINE|Alu	9786	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
10241	chr1	63521701	63521930	+	0	NA	intron (NM_001206739, intron 1 of 9)	intron (NM_001206739, intron 1 of 9)	1410	NM_014288	23421		NM_014288	ENSG00000142856	ITGB3BP	CENP-R|CENPR|HSU37139|NRIF3|TAP20	integrin subunit beta 3 binding protein	protein-coding
200443	chr6	135046521	135047530	+	0	NA	intron (NM_006620, intron 2 of 17)	intron (NM_006620, intron 2 of 17)	7797	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
185832	chr5	132461651	132461980	+	0	NA	intron (NR_161242, intron 3 of 3)	L1MB4|LINE|L1	28958	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
217157	chr8	26257801	26258550	+	0	NA	Intergenic	Intergenic	-33333	NM_002717	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
64936	chr14	35804371	35804950	+	0	NA	intron (NM_014990, intron 1 of 40)	AluJb|SINE|Alu	4635	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
225396	chr9	35044771	35045330	+	0	NA	exon (NM_001040412, exon 3 of 3)	exon (NM_001040412, exon 3 of 3)	2810	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
177733	chr4	122433971	122434600	+	0	NA	Intergenic	Intergenic	22440	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
16152	chr1	153690801	153691200	+	0	NA	intron (NM_000906, intron 20 of 21)	MIRb|SINE|MIR	-1207	NR_107050	102466879		NR_107050	ENSG00000274940	MIR8083	hsa-mir-8083	microRNA 8083	ncRNA
133611	chr2	126528101	126528400	+	0	NA	Intergenic	Intergenic	-127685	NM_016815	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
74796	chr15	63405201	63405400	+	0	NA	intron (NR_120375, intron 4 of 6)	intron (NR_120375, intron 4 of 6)	15070	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
43971	chr11	93783521	93785400	+	0	NA	5' UTR (NM_004268, exon 1 of 12)	5' UTR (NM_004268, exon 1 of 12)	178	NM_004268	9440		NM_004268	ENSG00000042429	MED17	CRSP6|CRSP77|DRIP80|SRB4|TRAP80	mediator complex subunit 17	protein-coding
1190	chr1	2239501	2239850	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	11356	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
206671	chr7	36366571	36367650	+	0	NA	5' UTR (NM_015314, exon 1 of 6)	5' UTR (NM_015314, exon 1 of 6)	130	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
159555	chr3	14791401	14791680	+	0	NA	Intergenic	Intergenic	19874	NR_135245	152274		NR_135245	ENSG00000260902	LINC02011	-	long intergenic non-protein coding RNA 2011	ncRNA
198665	chr6	107846601	107846800	+	0	NA	Intergenic	Intergenic	-22387	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
43302	chr11	76205801	76206760	+	0	NA	intron (NM_004626, intron 1 of 4)	CpG	222	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
191468	chr6	11087621	11087880	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6084	NM_001135575	221710		NM_001135575	ENSG00000224531	SMIM13	C6orf228	small integral membrane protein 13	protein-coding
24836	chr10	368051	368150	+	0	NA	intron (NM_014974, intron 18 of 36)	CpG	188106	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
29127	chr10	68521471	68521630	+	0	NA	intron (NM_001324314, intron 1 of 9)	intron (NM_001324314, intron 1 of 9)	-3332	NM_001324315	8034		NM_152707	ENSG00000122912	SLC25A16	D10S105E|GDA|GDC|HGT.1|ML7|hGP|hML7	solute carrier family 25 member 16	protein-coding
7760	chr1	36175121	36176150	+	0	NA	intron (NM_001286366, intron 6 of 17)	intron (NM_001286366, intron 6 of 17)	19475	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
51812	chr12	53422571	53422730	+	0	NA	Intergenic	AluSc5|SINE|Alu	-1205	NM_001164691	269		NM_020547	ENSG00000135409	AMHR2	AMHR|MISR2|MISRII|MRII	anti-Mullerian hormone receptor type 2	protein-coding
165196	chr3	72657451	72658000	+	0	NA	Intergenic	Intergenic	6524	NR_135531	105377162		NR_135531		LOC105377162	-	uncharacterized LOC105377162	ncRNA
42787	chr11	72778301	72778950	+	0	NA	intron (NM_006645, intron 2 of 6)	intron (NM_006645, intron 2 of 6)	-4905	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
32719	chr10	104253451	104253950	+	0	NA	promoter-TSS (NM_001191003)	promoter-TSS (NM_001191003)	-494	NM_001191003	9446		NM_004832	ENSG00000148834	GSTO1	GSTO 1-1|GSTTLp28|HEL-S-21|P28|SPG-R	glutathione S-transferase omega 1	protein-coding
90215	chr17	497221	497850	+	0	NA	Intergenic	Intergenic	-51595	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
219277	chr8	67504851	67505150	+	0	NA	intron (NM_020361, intron 6 of 10)	intron (NM_020361, intron 6 of 10)	161166	NR_136224	102724708		NR_136223		ARFGEF1-DT	-	ARFGEF1 divergent transcript	ncRNA
57900	chr12	123453901	123455480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3449	NR_104103	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
239341	chrY	19378751	19378930	+	0	NA	Intergenic	L1PA2|LINE|L1	124313	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
225368	chr9	34957771	34958730	+	0	NA	promoter-TSS (NM_015297)	promoter-TSS (NM_015297)	-35	NM_015297	23349		NM_015297	ENSG00000122733	PHF24	GINIP	PHD finger protein 24	protein-coding
25223	chr10	5812711	5814430	+	0	NA	promoter-TSS (NM_001494)	promoter-TSS (NM_001494)	-21	NM_001115156	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
28206	chr10	44970071	44970430	+	0	NA	exon (NM_032023, exon 2 of 11)	exon (NM_032023, exon 2 of 11)	8559	NM_007021	11067		NM_007021	ENSG00000165507	DEPP1	C10orf10|DEPP|FIG|Fseg	DEPP autophagy regulator 1	protein-coding
37528	chr11	18630801	18631000	+	0	NA	intron (NM_194285, intron 1 of 5)	AluSx|SINE|Alu	3442	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
167037	chr3	126524021	126524480	+	0	NA	promoter-TSS (NM_152889)	promoter-TSS (NM_152889)	95	NM_152889	166012		NM_152889	ENSG00000180767	CHST13	C4ST3	carbohydrate sulfotransferase 13	protein-coding
124534	chr2	262121	262630	+	0	NA	non-coding (NR_104223, exon 2 of 12)	non-coding (NR_104223, exon 2 of 12)	411	NR_104226	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
211328	chr7	104563151	104563350	+	0	NA	intron (NM_199000, intron 1 of 2)	L1PA2|LINE|L1	234594	NM_199000	375612		NM_199000	ENSG00000187416	LHFPL3	LHFPL4	LHFPL tetraspan subfamily member 3	protein-coding
63659	chr14	21014601	21015100	+	0	NA	Intergenic	Intergenic	8536	NR_106774	102465428		NR_106774	ENSG00000284122	MIR6717	hsa-mir-6717	microRNA 6717	ncRNA
56526	chr12	116687821	116688150	+	0	NA	Intergenic	Intergenic	50084	NM_001353625	79794		NM_024738	ENSG00000111412	SPRING1	C12orf49|LUR1|POST1|SPRING	SREBF pathway regulator in golgi 1	protein-coding
43748	chr11	86138571	86139950	+	0	NA	Intergenic	Intergenic	-69400	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
71998	chr15	25852451	25852550	+	0	NA	intron (NM_024490, intron 1 of 20)	LTR48B|LTR|ERV1	-3675	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
144841	chr20	36882001	36882200	+	0	NA	intron (NM_080628, intron 4 of 6)	intron (NM_080628, intron 4 of 6)	5962	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
99250	chr17	49710701	49710900	+	0	NA	3' UTR (NM_030802, exon 8 of 8)	3' UTR (NM_030802, exon 8 of 8)	-2836	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
119074	chr19	39195271	39195430	+	0	NA	Intergenic	Intergenic	-1614	NM_001001414	342897		NM_001001414	ENSG00000188505	NCCRP1	FBXO50|NCCRP-1	NCCRP1, F-box associated domain containing	protein-coding
94832	chr17	31433021	31433750	+	0	NA	intron (NM_032932, intron 2 of 14)	intron (NM_032932, intron 2 of 14)	41710	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
193449	chr6	30494501	30495630	+	0	NA	TTS (NM_005516)	TTS (NM_005516)	5556	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
49482	chr12	25212471	25212730	+	0	NA	intron (NM_004985, intron 4 of 4)	intron (NM_004985, intron 4 of 4)	17363	NM_001001660	144363		NM_001001660	ENSG00000205707	ETFRF1	LYRM5	electron transfer flavoprotein regulatory factor 1	protein-coding
176888	chr4	102785571	102785930	+	0	NA	intron (NR_125932, intron 4 of 4)	AluJb|SINE|Alu	8713	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
17698	chr1	158177701	158178000	+	0	NA	promoter-TSS (NM_001371763)	promoter-TSS (NM_001371763)	-180	NM_001371763	912		NM_001766	ENSG00000158473	CD1D	CD1A|R3|R3G1	CD1d molecule	protein-coding
82595	chr16	18818951	18819050	+	0	NA	intron (NM_015092, intron 56 of 62)	AluSx3|SINE|Alu	-17451	NM_015161	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
131302	chr2	96110871	96111250	+	0	NA	Intergenic	Intergenic	5511	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
187371	chr5	141851501	141851900	+	0	NA	Intergenic	Intergenic	14502	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
198801	chr6	109008071	109008250	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	828	NM_001199934	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
220335	chr8	98951321	98951800	+	0	NA	exon (NM_001286841, exon 5 of 5)	exon (NM_001286841, exon 5 of 5)	7118	NM_001142462	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
212353	chr7	127588051	127589780	+	0	NA	intron (NM_001662, intron 1 of 5)	CpG	504	NM_001662	381		NM_001662	ENSG00000004059	ARF5	-	ADP ribosylation factor 5	protein-coding
38972	chr11	47552101	47553730	+	0	NA	intron (NM_001376458, intron 1 of 13)	CpG	217	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
222033	chr8	130200251	130200550	+	0	NA	intron (NM_001362924, intron 5 of 30)	intron (NM_001362924, intron 5 of 30)	96133	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
98202	chr17	46129571	46130080	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	62957	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
147727	chr20	62388771	62389650	+	0	NA	TTS (NM_001024)	TTS (NM_001024)	2107	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
84885	chr16	31189971	31190430	+	0	NA	intron (NR_028388, intron 10 of 13)	intron (NR_028388, intron 10 of 13)	10061	NM_004960	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
210055	chr7	95476771	95477250	+	0	NA	Intergenic	Intergenic	-8891	NM_145872	51666		NM_016116	ENSG00000005981	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
154840	chr22	37077621	37078400	+	0	NA	intron (NM_153609, intron 10 of 17)	intron (NM_153609, intron 10 of 17)	25646	NM_153609	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
162139	chr3	46954521	46954780	+	0	NA	intron (NM_144716, intron 2 of 7)	AluSq4|SINE|Alu	21851	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
177116	chr4	108095051	108095550	+	0	NA	intron (NM_016269, intron 3 of 11)	MIRb|SINE|MIR	71497	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
64307	chr14	23566671	23568050	+	0	NA	TTS (NM_032452)	TTS (NM_032452)	431	NM_003917	8906		NM_003917	ENSG00000213983	AP1G2	G2AD	adaptor related protein complex 1 subunit gamma 2	protein-coding
174169	chr4	36281251	36282100	+	0	NA	promoter-TSS (NR_160267)	promoter-TSS (NR_160267)	59	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
38301	chr11	43643971	43644730	+	0	NA	Intergenic	Intergenic	-36388	NM_016142	51144		NM_016142	ENSG00000149084	HSD17B12	KAR|SDR12C1	hydroxysteroid 17-beta dehydrogenase 12	protein-coding
82560	chr16	18570521	18570980	+	0	NA	promoter-TSS (NR_003569)	promoter-TSS (NR_003569)	-498	NR_003569	653190		NR_003569	ENSG00000291057	ABCC6P1	-	ATP binding cassette subfamily C member 6 pseudogene 1	pseudo
2505	chr1	9695301	9695500	+	0	NA	intron (NM_001350234, intron 2 of 23)	HAL1|LINE|L1	3933	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
203781	chr7	1237171	1238000	+	0	NA	TTS (NM_001080461)	TTS (NM_001080461)	4713	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
154375	chr22	33921901	33922130	+	0	NA	intron (NM_001362949, intron 1 of 15)	CpG-18985	548	NM_001362951	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
745	chr1	1489671	1490230	+	0	NA	intron (NM_031921, intron 13 of 15)	intron (NM_031921, intron 13 of 15)	12101	NM_001317238	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
18875	chr1	168084751	168085150	+	0	NA	3' UTR (NM_001267612, exon 6 of 6)	3' UTR (NM_001267612, exon 6 of 6)	51757	NM_001267613	23432		NM_007369	ENSG00000143147	GPR161	RE2	G protein-coupled receptor 161	protein-coding
211533	chr7	105376071	105376230	+	0	NA	intron (NM_001350742, intron 2 of 16)	AluYj4|SINE|Alu	12771	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
20067	chr1	185693951	185694530	+	0	NA	Intergenic	UCON26|Unknown|Unknown	-40151	NM_031935	83872		NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
98556	chr17	47694701	47695980	+	0	NA	promoter-TSS (NM_014726)	promoter-TSS (NM_014726)	76	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
110130	chr19	1597051	1597550	+	0	NA	3' UTR (NM_006830, exon 3 of 3)	3' UTR (NM_006830, exon 3 of 3)	-4435	NM_001281453	53615		NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
181946	chr5	55021251	55021780	+	0	NA	non-coding (NR_104662, exon 3 of 3)	non-coding (NR_104662, exon 3 of 3)	2654	NR_104662	102467081		NR_104662		LOC102467081	-	uncharacterized LOC102467081	ncRNA
238300	chrX	149491901	149492330	+	0	NA	intron (NR_104128, intron 6 of 8)	LTR22A|LTR|ERVK	13191	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
223500	chr8	144082121	144083550	+	0	NA	intron (NM_003801, intron 1 of 11)	CpG	201	NM_003801	8733		NM_003801	ENSG00000197858	GPAA1	GAA1|GPIBD15|hGAA1	glycosylphosphatidylinositol anchor attachment 1	protein-coding
175392	chr4	70738151	70738350	+	0	NA	intron (NM_001345840, intron 1 of 13)	AluJb|SINE|Alu	3840	NM_001345840	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
103054	chr17	77186021	77186480	+	0	NA	intron (NM_001144001, intron 1 of 14)	intron (NM_001144001, intron 1 of 14)	1037	NM_001144001	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
210636	chr7	100464171	100464730	+	0	NA	promoter-TSS (NM_001004323)	promoter-TSS (NM_001004323)	-190	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
146306	chr20	49182521	49183380	+	0	NA	intron (NM_001322929, intron 1 of 14)	L1ME2z|LINE|L1	5384	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
79754	chr16	1351201	1352680	+	0	NA	promoter-TSS (NM_001001410)	promoter-TSS (NM_001001410)	9	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
117215	chr19	19408221	19408480	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	2675	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
177682	chr4	121799201	121799600	+	0	NA	Intergenic	Intergenic	-1923	NM_005033	5393		NM_005033	ENSG00000123737	EXOSC9	PCH1D|PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
157295	chr22	44331651	44332330	+	0	NA	Intergenic	CpG	-19039	NM_001099294	85352		NM_001099294	ENSG00000138944	SHISAL1	KIAA1644	shisa like 1	protein-coding
216068	chr8	10581121	10581380	+	0	NA	Intergenic	Intergenic	55718	NM_001197020	203074		NM_198464	ENSG00000184647	PRSS55	CT153|T-SP1|TSP1|UNQ9391	serine protease 55	protein-coding
73949	chr15	51731421	51732780	+	0	NA	intron (NM_001143917, intron 1 of 2)	intron (NM_001143917, intron 1 of 2)	4962	NM_001363969	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
206894	chr7	37731921	37732420	+	0	NA	intron (NM_001329993, intron 3 of 3)	AluSx3|SINE|Alu	48404	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
45791	chr11	119318051	119318150	+	0	NA	promoter-TSS (NM_006500)	promoter-TSS (NM_006500)	-970	NM_006500	4162		NM_006500	ENSG00000076706	MCAM	CD146|HEMCAM|METCAM|MUC18|MelCAM	melanoma cell adhesion molecule	protein-coding
41799	chr11	66865721	66865980	+	0	NA	intron (NM_022172, intron 9 of 20)	intron (NM_022172, intron 9 of 20)	8786	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
107803	chr18	51185901	51186100	+	0	NA	intron (NM_016626, intron 1 of 1)	intron (NM_016626, intron 1 of 1)	11681	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
219522	chr8	74599751	74599850	+	0	NA	promoter-TSS (NR_033830)	promoter-TSS (NR_033830)	-66	NR_033830	441355		NR_033830	ENSG00000254349	MIR2052HG	-	MIR2052 host gene	ncRNA
93021	chr17	17239951	17240130	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	-2872	NM_144606	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
194555	chr6	33346751	33347050	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-17621	NM_001369203	113523636		NM_001369203	ENSG00000286920	SMIM40	-	small integral membrane protein 40	protein-coding
184291	chr5	96811501	96811700	+	0	NA	intron (NM_001198541, intron 1 of 18)	MLT1K|LTR|ERVL-MaLR	2545	NM_001198541	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
5407	chr1	25522371	25522730	+	0	NA	Intergenic	Intergenic	-21056	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
24967	chr10	2908821	2909130	+	0	NA	Intergenic	Intergenic	157958	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
199840	chr6	127754721	127754980	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	100338	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
236595	chrX	73850851	73851700	+	0	NA	non-coding (NR_001564, exon 1 of 6)	non-coding (NR_001564, exon 1 of 6)	1478	NR_001564	7503		NR_001564	ENSG00000229807	XIST	DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66	X inactive specific transcript	ncRNA
28552	chr10	50606771	50607400	+	0	NA	intron (NM_147156, intron 1 of 10)	AluJo|SINE|Alu	16871	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
86359	chr16	66526821	66527180	+	0	NA	intron (NR_073520, intron 5 of 8)	intron (NR_073520, intron 5 of 8)	23122	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
167312	chr3	128724721	128725150	+	0	NA	Intergenic	MER50-int|LTR|ERV1	-1248	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
199375	chr6	116267801	116268000	+	0	NA	intron (NM_001322937, intron 2 of 6)	MSTB1|LTR|ERVL-MaLR	12030	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
228426	chr9	99762571	99762730	+	0	NA	intron (NR_109802, intron 2 of 6)	MLT1M|LTR|ERVL-MaLR	57239	NR_109802	101928438		NR_109802	ENSG00000237461	LOC101928438	-	uncharacterized LOC101928438	ncRNA
150022	chr21	37237651	37238130	+	0	NA	intron (NM_006052, intron 3 of 7)	intron (NM_006052, intron 3 of 7)	29387	NR_026719	257203		NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9	ncRNA
46840	chr11	132719051	132719700	+	0	NA	intron (NM_001319104, intron 1 of 6)	intron (NM_001319104, intron 1 of 6)	224262	NM_001319103	4978		NM_002545	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule like	protein-coding
183124	chr5	74838371	74838530	+	0	NA	intron (NR_164754, intron 4 of 12)	L3|LINE|CR1	-27443	NR_134288	441086		NR_134288		FAM169A-AS1	TP53LC02	FAM169A antisense RNA 1	ncRNA
170981	chr3	194585021	194585280	+	0	NA	intron (NR_047575, intron 1 of 2)	intron (NR_047575, intron 1 of 2)	882	NR_047574	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
37467	chr11	18324121	18324730	+	0	NA	intron (NM_005316, intron 1 of 14)	intron (NM_005316, intron 1 of 14)	1858	NM_005316	2965		NM_005316	ENSG00000110768	GTF2H1	BTF2|P62|TFB1|TFIIH	general transcription factor IIH subunit 1	protein-coding
70670	chr14	103076751	103077050	+	0	NA	Intergenic	AluY|SINE|Alu	-7310	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
8517	chr1	40981971	40982530	+	0	NA	intron (NR_125440, intron 1 of 17)	intron (NR_125440, intron 1 of 17)	2554	NM_001905	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
82693	chr16	20736571	20737030	+	0	NA	3' UTR (NM_017736, exon 4 of 4)	3' UTR (NM_017736, exon 4 of 4)	5018	NM_017736	55623		NM_017736	ENSG00000066654	THUMPD1	NEDSOA|Tan1	THUMP domain containing 1	protein-coding
104105	chr17	80276951	80277730	+	0	NA	intron (NM_020954, intron 3 of 16)	AluSz|SINE|Alu	16488	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
67230	chr14	68957771	68958330	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	21252	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
118835	chr19	38614421	38614680	+	0	NA	intron (NM_007181, intron 4 of 31)	intron (NM_007181, intron 4 of 31)	3403	NM_001042600	11184		NM_007181	ENSG00000104814	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
45982	chr11	121476401	121476800	+	0	NA	intron (NR_169501, intron 5 of 5)	L2a|LINE|L2	5189	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
204737	chr7	5565771	5566430	+	0	NA	Intergenic	AluSz|SINE|Alu	-26716	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
62033	chr13	88429871	88430030	+	0	NA	Intergenic	Intergenic	-110879	NR_047021	100874168		NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	ncRNA
134739	chr2	144599001	144599290	+	0	NA	Intergenic	Intergenic	-68822	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
181690	chr5	50575721	50577050	+	0	NA	Intergenic	Intergenic	-89546	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
139508	chr2	224546371	224546980	+	0	NA	intron (NM_001257197, intron 1 of 14)	intron (NM_001257197, intron 1 of 14)	23280	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
28044	chr10	43255401	43256750	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	10990	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
72237	chr15	30425621	30426280	+	0	NA	Intergenic	Intergenic	-11690	NM_001282484	101059918		NM_001282484	ENSG00000186399	GOLGA8R	-	golgin A8 family member R	protein-coding
182413	chr5	61347401	61347600	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	15242	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
185884	chr5	132688811	132689180	+	0	NA	Intergenic	Intergenic	-6366	NR_134248	105379176		NR_134248		LOC105379176	-	uncharacterized LOC105379176	ncRNA
197939	chr6	89836801	89837400	+	0	NA	intron (NM_012115, intron 1 of 9)	AluSz6|SINE|Alu	7220	NM_012115	9994		NM_012115	ENSG00000118412	CASP8AP2	CED-4|FLASH|RIP25	caspase 8 associated protein 2	protein-coding
203257	chr6	169556701	169557300	+	0	NA	intron (NR_146875, intron 19 of 20)	L1ME2|LINE|L1	145029	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
61005	chr13	48043171	48043330	+	0	NA	intron (NR_136687, intron 2 of 4)	intron (NR_136687, intron 2 of 4)	5524	NM_018283	55270		NM_018283	ENSG00000136159	NUDT15	MTH2|NUDT15D	nudix hydrolase 15	protein-coding
133259	chr2	113394401	113394950	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-43016	NM_001330340	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
132367	chr2	105761021	105761480	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	16187	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
78639	chr15	94259901	94260100	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	28439	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
164421	chr3	58640621	58640930	+	0	NA	intron (NM_138805, intron 6 of 9)	intron (NM_138805, intron 6 of 9)	-13165	NM_001282714	11170		NM_007177	ENSG00000168309	FAM107A	DRR1|TU3A	family with sequence similarity 107 member A	protein-coding
5097	chr1	24830671	24831030	+	0	NA	intron (NM_013943, intron 4 of 5)	intron (NM_013943, intron 4 of 5)	85403	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
202369	chr6	157800751	157801050	+	0	NA	Intergenic	Intergenic	-22346	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
224048	chr9	3513571	3513930	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	12251	NM_002919	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
29500	chr10	70599801	70600100	+	0	NA	intron (NM_005041, intron 2 of 2)	MIRc|SINE|MIR	2791	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
134865	chr2	148719621	148720080	+	0	NA	intron (NM_015630, intron 2 of 13)	L1PA11|LINE|L1	75099	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
38168	chr11	36292121	36292730	+	0	NA	Intergenic	MIRc|SINE|MIR	-3001	NM_001307937	29099		NM_014186	ENSG00000110442	COMMD9	C11orf55|HSPC166|LINC00610	COMM domain containing 9	protein-coding
39234	chr11	57655401	57655600	+	0	NA	Intergenic	Intergenic	-2244	NM_001142597	10978		NM_006831	ENSG00000172409	CLP1	HEAB|hClp1	cleavage factor polyribonucleotide kinase subunit 1	protein-coding
122917	chr19	50649451	50649750	+	0	NA	intron (NM_001195076, intron 1 of 4)	intron (NM_001195076, intron 1 of 4)	155	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
118769	chr19	38382201	38382600	+	0	NA	intron (NM_002812, intron 6 of 6)	MIR|SINE|MIR	5634	NM_152657	199720		NM_152657	ENSG00000179168	GGN	-	gametogenetin	protein-coding
215695	chr8	1039571	1039880	+	0	NA	intron (NM_001346810, intron 2 of 14)	CpG	-156499	NR_160729	105377777		NR_160729		LOC105377777	-	uncharacterized LOC105377777	ncRNA
148419	chr20	63955201	63955800	+	0	NA	non-coding (NR_027287, exon 1 of 1)	non-coding (NR_027287, exon 1 of 1)	916	NR_126526	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
38400	chr11	44941371	44941530	+	0	NA	intron (NM_001258323, intron 1 of 7)	MIR|SINE|MIR	8710	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
878	chr1	1638451	1638780	+	0	NA	intron (NM_033490, intron 10 of 18)	intron (NM_033490, intron 10 of 18)	5835	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
90488	chr17	1401521	1402200	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1598	NR_024058	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
54206	chr12	79890721	79891030	+	0	NA	intron (NM_001143885, intron 2 of 25)	intron (NM_001143885, intron 2 of 25)	23036	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
77585	chr15	85149551	85149850	+	0	NA	Intergenic	L1MC1|LINE|L1	85081	NR_158179	101929479		NR_158179		LOC101929479	-	golgin A2 pseudogene	pseudo
183999	chr5	90528801	90530380	+	0	NA	promoter-TSS (NM_001286812)	promoter-TSS (NM_001286812)	-6	NM_001286812	116068		NM_198273	ENSG00000176018	LYSMD3	-	LysM domain containing 3	protein-coding
190702	chr6	217151	217950	+	0	NA	Intergenic	Intergenic	-12066	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
227112	chr9	85871151	85871650	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	65398	NR_029410	389765		NR_029410		LOC389765	-	kinesin family member 27 pseudogene	pseudo
63617	chr14	20627501	20628450	+	0	NA	Intergenic	LTR24B|LTR|ERV1	13716	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
141489	chr2	241101051	241101350	+	0	NA	intron (NR_138466, intron 1 of 6)	MER1A|DNA|hAT-Charlie	1087	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
64867	chr14	35298871	35299030	+	0	NA	intron (NM_001282232, intron 1 of 6)	AluSz|SINE|Alu	6568	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
131200	chr2	95038371	95038700	+	0	NA	intron (NM_022440, intron 1 of 1)	(AGTGAGTG)n|Simple_repeat|Simple_repeat	12827	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
202063	chr6	154228551	154228850	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	101381	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
25572	chr10	7786571	7786730	+	0	NA	intron (NM_012311, intron 1 of 12)	MLT1A|LTR|ERVL-MaLR	1343	NR_045609	22944		NM_012311	ENSG00000151657	KIN	BTCD|KIN17|Rts2	Kin17 DNA and RNA binding protein	protein-coding
38861	chr11	47339151	47339650	+	0	NA	exon (NM_000256, exon 21 of 34)	exon (NM_000256, exon 21 of 34)	13302	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
58836	chr12	132866871	132867700	+	0	NA	intron (NM_018223, intron 5 of 17)	L1M6B|LINE|L1	20320	NM_001161346	55743		NM_018223	ENSG00000072609	CHFR	RNF116|RNF196	checkpoint with forkhead and ring finger domains	protein-coding
39452	chr11	60953701	60954350	+	0	NA	Intergenic	Intergenic	-1849	NR_027391	51296		NM_016582	ENSG00000110446	SLC15A3	OCTP|PHT2|PTR3|hPHT2	solute carrier family 15 member 3	protein-coding
8815	chr1	42947721	42948650	+	0	NA	intron (NM_006516, intron 1 of 9)	intron (NM_006516, intron 1 of 9)	10683	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
124582	chr2	731801	732000	+	0	NA	Intergenic	Intergenic	-54494	NM_152834	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
217385	chr8	28117951	28118250	+	0	NA	intron (NM_018091, intron 7 of 14)	intron (NM_018091, intron 7 of 14)	24961	NM_001284224	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
200365	chr6	134169821	134170430	+	0	NA	3' UTR (NM_001291995, exon 11 of 11)	3' UTR (NM_001291995, exon 11 of 11)	4741	NM_005627	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
150944	chr21	44293451	44294990	+	0	NA	intron (NM_000383, intron 11 of 13)	(CCCACAC)n|Simple_repeat|Simple_repeat	-5833	NM_002626	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
70521	chr14	102319281	102321200	+	0	NA	intron (NR_169566, intron 1 of 7)	intron (NR_169566, intron 1 of 7)	494	NR_169567	55778		NM_018335	ENSG00000022976	ZNF839	C14orf131	zinc finger protein 839	protein-coding
193065	chr6	28710551	28710850	+	0	NA	Intergenic	Intergenic	-56225	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
43862	chr11	88306621	88307350	+	0	NA	intron (NM_001814, intron 4 of 6)	LTR1B1|LTR|ERV1	30751	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
44612	chr11	108648001	108648520	+	0	NA	Intergenic	L1M1|LINE|L1	-16809	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
221559	chr8	125088201	125088600	+	0	NA	intron (NM_014846, intron 1 of 28)	AluSx1|SINE|Alu	3392	NM_014846	9897		NM_014846	ENSG00000164961	WASHC5	KIAA0196|RTSC|RTSC1|SPG8	WASH complex subunit 5	protein-coding
165576	chr3	101563871	101564330	+	0	NA	intron (NM_017819, intron 1 of 1)	intron (NM_017819, intron 1 of 1)	2232	NM_017819	54931		NM_017819	ENSG00000174173	TRMT10C	COXPD30|HNYA|MRPP1|RG9MTD1	tRNA methyltransferase 10C, mitochondrial RNase P subunit	protein-coding
210114	chr7	98051001	98051480	+	0	NA	Intergenic	Intergenic	-55622	NM_014916	22853		NM_014916	ENSG00000164715	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK	lemur tyrosine kinase 2	protein-coding
197751	chr6	87182221	87182900	+	0	NA	intron (NM_015021, intron 1 of 7)	intron (NM_015021, intron 1 of 7)	26995	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
32757	chr10	104323801	104324680	+	0	NA	intron (NR_120622, intron 2 of 2)	intron (NR_120622, intron 2 of 2)	876	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
125627	chr2	19354401	19354600	+	0	NA	intron (NM_145260, intron 1 of 2)	intron (NM_145260, intron 1 of 2)	4123	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
57472	chr12	122028601	122028800	+	0	NA	intron (NM_020993, intron 1 of 5)	MIRb|SINE|MIR	6816	NM_001024808	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
134951	chr2	151766671	151767030	+	0	NA	Intergenic	Intergenic	-32363	NM_001164508	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
138011	chr2	201268801	201269350	+	0	NA	intron (NM_033355, intron 3 of 9)	AluJb|SINE|Alu	8539	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
84770	chr16	30986621	30987330	+	0	NA	exon (NM_025193, exon 6 of 7)	exon (NM_025193, exon 6 of 7)	1768	NM_001142778	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
196141	chr6	42427701	42428790	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	23806	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
111667	chr19	4252301	4252750	+	0	NA	intron (NM_018074, intron 3 of 7)	AluY|SINE|Alu	5445	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
113856	chr19	10646271	10646430	+	0	NA	Intergenic	AluSg|SINE|Alu	7522	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
205338	chr7	12641051	12641550	+	0	NA	intron (NR_156701, intron 11 of 14)	L2|LINE|L2	-45527	NM_212460	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
95576	chr17	36945351	36945450	+	0	NA	TTS (NM_005568)	TTS (NM_005568)	-3554	NM_012138	26574		NM_012138	ENSG00000275700	AATF	BFR2|CHE-1|CHE1|DED	apoptosis antagonizing transcription factor	protein-coding
216096	chr8	11019371	11019530	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	15852	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
94549	chr17	29591341	29592130	+	0	NA	Intergenic	Intergenic	-1397	NM_152345	124930		NM_152345	ENSG00000198720	ANKRD13B	-	ankyrin repeat domain 13B	protein-coding
83894	chr16	28979871	28980030	+	0	NA	intron (NM_032038, intron 5 of 11)	AluSz|SINE|Alu	-4853	NM_001014989	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
104564	chr17	81345571	81346900	+	0	NA	Intergenic	CpG	-15561	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
175143	chr4	55402401	55402850	+	0	NA	intron (NM_018475, intron 1 of 5)	AluSz6|SINE|Alu	6668	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
15855	chr1	151416121	151416700	+	0	NA	intron (NM_015100, intron 10 of 18)	AluSz6|SINE|Alu	16837	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
137163	chr2	191106851	191107150	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	43994	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
19966	chr1	184906151	184906250	+	0	NA	intron (NM_052966, intron 1 of 13)	AluJo|SINE|Alu	68308	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
56082	chr12	110647551	110648050	+	0	NA	TTS (NM_001040107)	TTS (NM_001040107)	33671	NM_001082537	79600		NM_024549	ENSG00000204852	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
134601	chr2	144328851	144329480	+	0	NA	5' UTR (NM_001354353, exon 2 of 10)	5' UTR (NM_001354353, exon 2 of 10)	3069	NM_001376318	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
186852	chr5	139468251	139468850	+	0	NA	Intergenic	Intergenic	-2454	NM_001365197	111064649		NM_001365197	ENSG00000283288	SMIM33	-	small integral membrane protein 33	protein-coding
131081	chr2	88866951	88867050	+	0	NA	Intergenic	LTR5B|LTR|ERVK	54630	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
38679	chr11	46537651	46538130	+	0	NA	intron (NM_001267782, intron 8 of 19)	intron (NM_001267782, intron 8 of 19)	49554	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
147138	chr20	54668601	54668800	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	193107	NM_001294161	55816		NM_018431	ENSG00000101134	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
127960	chr2	46632321	46632780	+	0	NA	Intergenic	MamRep564|Unknown|Unknown	15335	NM_014171	9419		NM_014171	ENSG00000119878	CRIPT	HSPC139|RTS3|SSMDF	CXXC repeat containing interactor of PDZ3 domain	protein-coding
159783	chr3	16315801	16316250	+	0	NA	3' UTR (NM_015150, exon 10 of 10)	3' UTR (NM_015150, exon 10 of 10)	50813	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
84250	chr16	30008871	30009650	+	0	NA	exon (NM_001282068, exon 4 of 11)	exon (NM_001282068, exon 4 of 11)	1767	NM_003586	8448		NM_003586	ENSG00000149927	DOC2A	Doc2	double C2 domain alpha	protein-coding
168653	chr3	150409801	150410500	+	0	NA	exon (NM_014779, exon 1 of 4)	exon (NM_014779, exon 1 of 4)	1852	NR_130136	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
195274	chr6	36490501	36490780	+	0	NA	non-coding (NR_104481, exon 4 of 4)	non-coding (NR_104481, exon 4 of 4)	47640	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
126275	chr2	27192501	27192780	+	0	NA	Intergenic	AluY|SINE|Alu	19628	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
156580	chr22	41522571	41523150	+	0	NA	exon (NM_001098, exon 10 of 18)	exon (NM_001098, exon 10 of 18)	21610	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
231830	chr9	132585101	132585500	+	0	NA	intron (NM_020064, intron 1 of 2)	intron (NM_020064, intron 1 of 2)	2694	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
92907	chr17	16455171	16455730	+	0	NA	intron (NM_001113567, intron 2 of 3)	AluSx1|SINE|Alu	14224	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
40057	chr11	62726501	62729730	+	0	NA	promoter-TSS (NM_001318812)	promoter-TSS (NM_001318812)	42	NM_001318812	283237		NM_173810	ENSG00000162222	TTC9C	-	tetratricopeptide repeat domain 9C	protein-coding
182295	chr5	57779551	57779730	+	0	NA	Intergenic	Intergenic	119522	NR_109900	101928539		NR_109900	ENSG00000249584	LINC02225	-	long intergenic non-protein coding RNA 2225	ncRNA
192551	chr6	25296471	25296630	+	0	NA	intron (NM_001173977, intron 2 of 36)	intron (NM_001173977, intron 2 of 36)	17176	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
16312	chr1	154182801	154184450	+	0	NA	promoter-TSS (NM_001043353)	promoter-TSS (NM_001043353)	-376	NM_001278190	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
32277	chr10	102107771	102108000	+	0	NA	3' UTR (NM_003893, exon 11 of 11)	3' UTR (NM_003893, exon 11 of 11)	7117	NM_003893	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
89832	chr16	89581951	89582250	+	0	NA	intron (NM_014427, intron 3 of 16)	intron (NM_014427, intron 3 of 16)	6342	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
200607	chr6	136752721	136753150	+	0	NA	intron (NM_005923, intron 1 of 29)	L2a|LINE|L2	-31112	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
130609	chr2	85932401	85932980	+	0	NA	Intergenic	AluJb|SINE|Alu	43410	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
48291	chr12	8952871	8953030	+	0	NA	intron (NR_137427, intron 1 of 2)	L1MC4|LINE|L1	2906	NM_001329103	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
172328	chr4	1686071	1686230	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1837	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
161202	chr3	39150811	39151700	+	0	NA	intron (NM_001320560, intron 1 of 4)	intron (NM_001320560, intron 1 of 4)	2336	NM_033027	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
173281	chr4	7059671	7060180	+	0	NA	3' UTR (NM_025196, exon 4 of 4)	3' UTR (NM_025196, exon 4 of 4)	8139	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
168903	chr3	152328201	152328400	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	12690	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
237334	chrX	118520771	118520930	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	24941	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
156669	chr22	41649571	41650330	+	0	NA	intron (NM_001288976, intron 7 of 12)	AluSx|SINE|Alu	28655	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
33561	chr10	119333221	119333480	+	0	NA	intron (NM_005308, intron 2 of 15)	MIRc|SINE|MIR	-44622	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
174548	chr4	40207501	40208430	+	0	NA	intron (NM_001278362, intron 2 of 3)	AluSx|SINE|Alu	10934	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
165988	chr3	108090161	108092210	+	0	NA	promoter-TSS (NM_001382306)	promoter-TSS (NM_001382306)	-154	NM_001777	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
30630	chr10	80407821	80408980	+	0	NA	promoter-TSS (NM_001243781)	promoter-TSS (NM_001243781)	-86	NM_001243780	84293		NM_032333	ENSG00000122378	PRXL2A	Adrx|C10orf58|FAM213A|PAMM	peroxiredoxin like 2A	protein-coding
63952	chr14	22105821	22106230	+	0	NA	Intergenic	Intergenic	326728	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
16588	chr1	155024551	155024830	+	0	NA	intron (NM_144622, intron 10 of 14)	L2c|LINE|L2	9091	NM_144622	127579		NM_144622	ENSG00000163354	DCST2	SPE42	DC-STAMP domain containing 2	protein-coding
3969	chr1	18816801	18817200	+	0	NA	Intergenic	(ACC)n|Simple_repeat|Simple_repeat	42660	NM_152232	80834		NM_152232	ENSG00000179002	TAS1R2	GPR71|T1R2|TR2	taste 1 receptor member 2	protein-coding
44435	chr11	104708951	104709550	+	0	NA	Intergenic	Intergenic	-99948	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
146581	chr20	50101421	50101880	+	0	NA	intron (NM_001282579, intron 1 of 4)	intron (NM_001282579, intron 1 of 4)	11500	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
130959	chr2	87525521	87526430	+	0	NA	Intergenic	CR1-3_Croc|LINE|CR1	56025	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
200957	chr6	139186251	139186930	+	0	NA	Intergenic	L1ME1|LINE|L1	51510	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
99885	chr17	56682071	56682230	+	0	NA	Intergenic	L3|LINE|CR1	88451	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
57734	chr12	122892521	122892780	+	0	NA	intron (NM_024667, intron 1 of 3)	AluJr|SINE|Alu	3474	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
53536	chr12	67274821	67275450	+	0	NA	intron (NM_001329674, intron 2 of 15)	Tigger16a|DNA|TcMar-Tigger	5777	NM_001329676	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
237001	chrX	101799371	101799830	+	0	NA	Intergenic	Intergenic	57977	NR_159739	55998		NM_032946	ENSG00000290798	NXF5	-	nuclear RNA export factor 5	pseudo
173000	chr4	4281771	4282430	+	0	NA	intron (NM_017816, intron 3 of 9)	intron (NM_017816, intron 3 of 9)	7921	NM_001145725	55646		NM_017816	ENSG00000145220	LYAR	ZC2HC2|ZLYAR	Ly1 antibody reactive	protein-coding
117493	chr19	19818821	19819350	+	0	NA	intron (NM_001099269, intron 1 of 3)	intron (NM_001099269, intron 1 of 3)	2665	NM_001099269	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
157413	chr22	45058121	45058380	+	0	NA	Intergenic	MIRc|SINE|MIR	-48245	NM_138415	112885		NM_138415	ENSG00000056487	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
44957	chr11	116813351	116813650	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	9804	NM_000482	337		NM_000482	ENSG00000110244	APOA4	-	apolipoprotein A4	protein-coding
48562	chr12	10247651	10248330	+	0	NA	intron (NM_001351060, intron 2 of 8)	Kanga1a|DNA|TcMar-Tc2	9029	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
80618	chr16	2969901	2970650	+	0	NA	intron (NM_001284512, intron 1 of 1)	CpG-9143	927	NM_001284511	124222		NM_152341	ENSG00000162073	PAQR4	-	progestin and adipoQ receptor family member 4	protein-coding
171353	chr3	196059151	196059650	+	0	NA	intron (NM_001313966, intron 12 of 16)	intron (NM_001313966, intron 12 of 16)	22690	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
162425	chr3	48422151	48422850	+	0	NA	intron (NM_002673, intron 4 of 37)	intron (NM_002673, intron 4 of 37)	6963	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
1952	chr1	6575921	6576180	+	0	NA	intron (NM_138697, intron 3 of 5)	AluSx1|SINE|Alu	-3944	NM_001278648	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
159684	chr3	15520001	15520600	+	0	NA	intron (NM_005677, intron 1 of 16)	intron (NM_005677, intron 1 of 16)	1406	NM_005677	8292		NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
216404	chr8	18072001	18072200	+	0	NA	intron (NM_177924, intron 2 of 13)	intron (NM_177924, intron 2 of 13)	11096	NM_001363743	427		NM_004315	ENSG00000104763	ASAH1	AC|ACDase|ASAH|PHP|PHP32|SMAPME	N-acylsphingosine amidohydrolase 1	protein-coding
168754	chr3	151203971	151204130	+	0	NA	promoter-TSS (NM_013308)	promoter-TSS (NM_013308)	-834	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
185011	chr5	115296051	115297550	+	0	NA	promoter-TSS (NM_001040440)	promoter-TSS (NM_001040440)	-146	NM_001375899	153733		NM_152549	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
226451	chr9	71703171	71703530	+	0	NA	intron (NM_001135820, intron 17 of 22)	intron (NM_001135820, intron 17 of 22)	65163	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
88594	chr16	85584371	85584530	+	0	NA	Intergenic	Intergenic	-26959	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
237280	chrX	111682851	111683600	+	0	NA	intron (NM_001324290, intron 2 of 3)	MIR|SINE|MIR	1568	NM_001257239	79868		NM_018466	ENSG00000101901	ALG13	CDG1S|CXorf45|DEE36|EIEE36|GLT28D1|MDS031|TDRD13|YGL047W	ALG13 UDP-N-acetylglucosaminyltransferase subunit	protein-coding
91453	chr17	4805401	4805600	+	0	NA	Intergenic	AluSq|SINE|Alu	-1652	NM_001243108	5338		NM_002663	ENSG00000129219	PLD2	PLD1C	phospholipase D2	protein-coding
230052	chr9	127403321	127403580	+	0	NA	intron (NM_001271712, intron 3 of 7)	intron (NM_001271712, intron 3 of 7)	6281	NM_014580	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
181979	chr5	55172991	55174180	+	0	NA	promoter-TSS (NM_001145734)	promoter-TSS (NM_001145734)	-408	NM_152623	166979		NM_152623	ENSG00000164287	CDC20B	G6VTS76519	cell division cycle 20B	protein-coding
214706	chr7	150996751	150997430	+	0	NA	intron (NM_001160109, intron 4 of 13)	intron (NM_001160109, intron 4 of 13)	3286	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
33292	chr10	114694101	114694380	+	0	NA	intron (NM_001322884, intron 1 of 20)	intron (NM_001322884, intron 1 of 20)	-9237	NM_001322882	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
128102	chr2	48016671	48016980	+	0	NA	Intergenic	Intergenic	-110327	NM_001190274	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
102101	chr17	74987151	74988350	+	0	NA	5' UTR (NM_014603, exon 1 of 5)	5' UTR (NM_014603, exon 1 of 5)	118	NM_014603	30850		NM_014603	ENSG00000109089	CDR2L	HUMPPA	cerebellar degeneration related protein 2 like	protein-coding
93391	chr17	18314251	18316300	+	0	NA	promoter-TSS (NM_004618)	promoter-TSS (NM_004618)	-18	NM_144775	140775		NM_144775	ENSG00000176994	SMCR8	DENND8A	SMCR8-C9orf72 complex subunit	protein-coding
111305	chr19	3606401	3607380	+	0	NA	promoter-TSS (NR_038865)	promoter-TSS (NR_038865)	-15	NM_001060	6915		NM_001060	ENSG00000006638	TBXA2R	BDPLT13|TXA2-R	thromboxane A2 receptor	protein-coding
71916	chr15	22785171	22785330	+	0	NA	promoter-TSS (NM_001142275)	promoter-TSS (NM_001142275)	-975	NM_001142275	123606		NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
130731	chr2	86781021	86781900	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	9453	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
93856	chr17	21004271	21004650	+	0	NA	intron (NM_015276, intron 11 of 12)	intron (NM_015276, intron 11 of 12)	38551	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
92336	chr17	8158631	8159850	+	0	NA	TTS (NM_014232)	TTS (NM_014232)	3636	NM_001330125	6844		NM_014232	ENSG00000220205	VAMP2	NEDHAHM|SYB2|VAMP-2	vesicle associated membrane protein 2	protein-coding
205461	chr7	17250221	17250680	+	0	NA	Intergenic	L1PB|LINE|L1	-48202	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
13575	chr1	116138401	116139400	+	0	NA	Intergenic	AluSx1|SINE|Alu	27145	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
108585	chr18	75205951	75206450	+	0	NA	promoter-TSS (NM_001306093)	promoter-TSS (NM_001306093)	-687	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
171059	chr3	195380951	195381050	+	0	NA	intron (NM_012287, intron 4 of 22)	intron (NM_012287, intron 4 of 22)	62020	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
160429	chr3	28301971	28302530	+	0	NA	intron (NM_001331186, intron 3 of 4)	intron (NM_001331186, intron 3 of 4)	-46471	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
128474	chr2	57759901	57760250	+	0	NA	Intergenic	Intergenic	-147576	NM_001288838	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
52262	chr12	54439421	54440150	+	0	NA	intron (NR_120487, intron 3 of 3)	intron (NR_120487, intron 3 of 3)	20000	NR_120488	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
17616	chr1	156923921	156924650	+	0	NA	intron (NM_144702, intron 2 of 14)	CpG-1860	3653	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
183670	chr5	80569901	80570400	+	0	NA	intron (NM_001004441, intron 1 of 4)	CpG	130	NM_001004441	340120		NM_001004441	ENSG00000189127	ANKRD34B	DP58	ankyrin repeat domain 34B	protein-coding
207233	chr7	43728751	43729880	+	0	NA	5' UTR (NM_001371315, exon 1 of 6)	5' UTR (NM_001371315, exon 1 of 6)	208	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
132861	chr2	111043321	111043580	+	0	NA	intron (NM_001371254, intron 16 of 18)	intron (NM_001371254, intron 16 of 18)	72138	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
85088	chr16	33028421	33028830	+	0	NA	Intergenic	CpG	-143483	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
54723	chr12	93570701	93572380	+	0	NA	promoter-TSS (NR_038263)	promoter-TSS (NR_038263)	-141	NM_001270470	8835		NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
142272	chr20	3194071	3194230	+	0	NA	intron (NM_023935, intron 6 of 8)	intron (NM_023935, intron 6 of 8)	10532	NM_023935	65992		NM_023935	ENSG00000198171	DDRGK1	C20orf116|SEMDSH|UFBP1|dJ1187M17.3	DDRGK domain containing 1	protein-coding
86157	chr16	57756721	57757750	+	0	NA	TTS (NM_001130100)	TTS (NM_001130100)	15117	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
179641	chr4	186384371	186384530	+	0	NA	intron (NR_033900, intron 1 of 3)	L1PB1|LINE|L1	116608	NR_033901	285441		NR_033900	ENSG00000251165	F11-AS1	-	F11 antisense RNA 1	ncRNA
205790	chr7	23681921	23682180	+	0	NA	intron (NM_001300932, intron 1 of 5)	MER5A1|DNA|hAT-Charlie	1851	NM_001300932	340277		NM_199136	ENSG00000188732	FAM221A	C7orf46	family with sequence similarity 221 member A	protein-coding
127648	chr2	43151951	43152250	+	0	NA	Intergenic	Intergenic	-49655	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
47374	chr12	2583021	2583300	+	0	NA	intron (NM_199460, intron 15 of 49)	intron (NM_199460, intron 15 of 49)	89060	NR_046579	100874235		NR_046579	ENSG00000256271	CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
101515	chr17	67822851	67823600	+	0	NA	Intergenic	Intergenic	-2278	NM_182641	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
174989	chr4	49654921	49655180	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	668408	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
216172	chr8	11769221	11771930	+	0	NA	intron (NM_001349441, intron 1 of 3)	intron (NM_001349441, intron 1 of 3)	865	NM_001135748	252969		NM_145043	ENSG00000154328	NEIL2	NEH2|NEI2	nei like DNA glycosylase 2	protein-coding
165549	chr3	101389951	101390800	+	0	NA	intron (NM_001282803, intron 3 of 20)	L1M2|LINE|L1	-69800	NM_016247	50939		NM_016247	ENSG00000081148	IMPG2	IPM200|RP56|SPACRCAN|VMD5	interphotoreceptor matrix proteoglycan 2	protein-coding
52591	chr12	56191271	56191450	+	0	NA	Intergenic	Intergenic	-1877	NM_139067	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
1284	chr1	2326701	2326900	+	0	NA	intron (NM_024848, intron 12 of 13)	CpG	25861	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
74718	chr15	63146701	63146900	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	10677	NM_015920	51065		NM_015920	ENSG00000185088	RPS27L	-	ribosomal protein S27 like	protein-coding
54188	chr12	79690521	79691530	+	0	NA	promoter-TSS (NM_001354733)	promoter-TSS (NM_001354733)	-61	NM_002583	5074		NM_002583	ENSG00000177425	PAWR	PAR4|Par-4	pro-apoptotic WT1 regulator	protein-coding
22332	chr1	214282721	214283100	+	0	NA	intron (NM_020197, intron 1 of 11)	intron (NM_020197, intron 1 of 11)	1751	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
23852	chr1	234756401	234757100	+	0	NA	TTS (NR_148962)	TTS (NR_148962)	3306	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
218205	chr8	42014101	42014550	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-37425	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
145067	chr20	38484951	38485250	+	0	NA	intron (NM_020336, intron 1 of 29)	MER20B|DNA|hAT-Charlie	12257	NM_001282918	57148		NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta	Ral GTPase activating protein non-catalytic subunit beta	protein-coding
47	chr1	201401	202450	+	0	NA	Intergenic	MIRc|SINE|MIR	4672	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
131814	chr2	98615371	98616000	+	0	NA	intron (NM_001330353, intron 3 of 5)	L2a|LINE|L2	7096	NM_001330353	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
180299	chr5	5305101	5305300	+	0	NA	intron (NM_139056, intron 20 of 22)	(CA)n|Simple_repeat|Simple_repeat	-117477	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
208813	chr7	73646721	73647050	+	0	NA	Intergenic	Intergenic	-20946	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
70409	chr14	102008571	102008880	+	0	NA	intron (NM_001376, intron 29 of 77)	AluSz|SINE|Alu	44152	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
129745	chr2	70976871	70978130	+	0	NA	promoter-TSS (NM_001369683)	promoter-TSS (NM_001369683)	-945	NM_001369683	79998		NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
36245	chr11	3756801	3757000	+	0	NA	intron (NM_001365128, intron 10 of 32)	AluY|SINE|Alu	40646	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
132605	chr2	108580971	108581200	+	0	NA	intron (NM_001371497, intron 1 of 9)	intron (NM_001371497, intron 1 of 9)	906	NM_001371497	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
76593	chr15	75355201	75355600	+	0	NA	TTS (NM_006715)	TTS (NM_006715)	-1715	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
186780	chr5	139346501	139347550	+	0	NA	intron (NM_001033112, intron 1 of 3)	AluSz|SINE|Alu	4591	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
54881	chr12	95790971	95791600	+	0	NA	promoter-TSS (NM_001329700)	promoter-TSS (NM_001329700)	-130	NM_001329701	59277		NM_021229	ENSG00000074527	NTN4	PRO3091	netrin 4	protein-coding
35659	chr11	1863401	1864050	+	0	NA	intron (NM_002339, intron 1 of 10)	intron (NM_002339, intron 1 of 10)	-1440	NM_001242932	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
194632	chr6	33577021	33577500	+	0	NA	intron (NM_001188, intron 2 of 5)	intron (NM_001188, intron 2 of 5)	3016	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
189583	chr5	175522751	175523450	+	0	NA	intron (NM_001322978, intron 10 of 10)	intron (NM_001322978, intron 10 of 10)	44540	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
31651	chr10	97402901	97404480	+	0	NA	Intergenic	Intergenic	-2320	NM_001145114	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
153244	chr22	24012501	24013400	+	0	NA	intron (NM_001199281, intron 1 of 36)	AluSx1|SINE|Alu	1580	NM_001199281	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
103440	chr17	78264771	78264930	+	0	NA	intron (NR_073178, intron 5 of 6)	Charlie7a|DNA|hAT-Charlie	13642	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
201883	chr6	150866201	150867480	+	0	NA	non-coding (NR_146720, exon 1 of 29)	non-coding (NR_146720, exon 1 of 29)	354	NM_001350491	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
138884	chr2	217610221	217611280	+	0	NA	intron (NR_026597, intron 1 of 12)	intron (NR_026597, intron 1 of 12)	145843	NR_026597	729582		NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
79274	chr16	526501	528600	+	0	NA	promoter-TSS (NR_024121)	promoter-TSS (NR_024121)	-143	NR_024121	64493		NR_024121		LINC00235	C16orf10|LA16c-356B8.1|NCRNA00235	long intergenic non-protein coding RNA 235	ncRNA
132955	chr2	111465101	111465530	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	29846	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
137310	chr2	195665521	195665780	+	0	NA	intron (NM_020342, intron 1 of 9)	HAL1|LINE|L1	8424	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
142129	chr20	2713321	2713850	+	0	NA	intron (NR_138537, intron 7 of 17)	L2a|LINE|L2	20707	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
167737	chr3	131386271	131386830	+	0	NA	non-coding (NR_033268, exon 2 of 2)	non-coding (NR_033268, exon 2 of 2)	4776	NM_152395	131870		NM_152395	ENSG00000198585	NUDT16	-	nudix hydrolase 16	protein-coding
199430	chr6	117181971	117182200	+	0	NA	Intergenic	L1PA3|LINE|L1	-83473	NM_153453	245806		NM_153453	ENSG00000170162	VGLL2	VGL2|VITO1	vestigial like family member 2	protein-coding
28276	chr10	46019671	46020280	+	0	NA	promoter-TSS (NM_001145262)	promoter-TSS (NM_001145262)	-438	NM_001145262	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
57970	chr12	123933871	123934450	+	0	NA	intron (NM_207437, intron 76 of 77)	intron (NM_207437, intron 76 of 77)	37899	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
30915	chr10	87087501	87087900	+	0	NA	intron (NM_001318906, intron 1 of 13)	intron (NM_001318906, intron 1 of 13)	6387	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
63111	chr13	113315101	113315300	+	0	NA	intron (NM_005561, intron 4 of 8)	intron (NM_005561, intron 4 of 8)	17961	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
216229	chr8	12186171	12187000	+	0	NA	exon (NM_001083537, exon 5 of 7)	exon (NM_001083537, exon 5 of 7)	849	NR_146925	619423		NR_146925		FAM85A	-	family with sequence similarity 85 member A	ncRNA
222634	chr8	141119301	141120180	+	0	NA	Intergenic	Intergenic	-8849	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
130812	chr2	87041471	87041830	+	0	NA	intron (NR_026846, intron 6 of 10)	MER52-int|LTR|ERV1	-19800	NM_002665	5342		NM_002665	ENSG00000125551	PLGLB2	PLGLA|PLGLA1|PLGP1|PLGP2|PRGA	plasminogen like B2	protein-coding
207421	chr7	44466771	44467200	+	0	NA	intron (NM_015332, intron 2 of 5)	intron (NM_015332, intron 2 of 5)	23673	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
69265	chr14	93053601	93054200	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	-13552	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
52986	chr12	57492421	57493050	+	0	NA	intron (NM_004990, intron 7 of 20)	L2b|LINE|L2	-3911	NM_001319850	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
143487	chr20	31070501	31070700	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-187064	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
162316	chr3	47425471	47425850	+	0	NA	intron (NM_001320044, intron 4 of 19)	intron (NM_001320044, intron 4 of 19)	44639	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
203200	chr6	167706121	167706780	+	0	NA	Intergenic	Intergenic	-22663	NR_117092	441178		NM_001025489	ENSG00000203688	LINC02487	-	long intergenic non-protein coding RNA 2487	ncRNA
177339	chr4	109994401	109994780	+	0	NA	intron (NM_001963, intron 19 of 23)	intron (NM_001963, intron 19 of 23)	81707	NM_001178131	1950		NM_001963	ENSG00000138798	EGF	HOMG4|URG	epidermal growth factor	protein-coding
179975	chr5	857401	857630	+	0	NA	Intergenic	Intergenic	-6529	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
181997	chr5	55229571	55229730	+	0	NA	Intergenic	MIR|SINE|MIR	-2335	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
7767	chr1	36180521	36180980	+	0	NA	TTS (NM_018067)	TTS (NM_018067)	24590	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
111648	chr19	4197871	4198650	+	0	NA	intron (NM_133475, intron 2 of 21)	CpG	14906	NM_133475	170961		NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
96833	chr17	41968701	41969000	+	0	NA	intron (NM_033133, intron 2 of 3)	intron (NM_033133, intron 2 of 3)	1053	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
118445	chr19	35862021	35862280	+	0	NA	intron (NM_001363667, intron 11 of 13)	intron (NM_001363667, intron 11 of 13)	5239	NM_001329530	84063		NM_032123	ENSG00000126259	KIRREL2	FILTRIN|NEPH3|NLG1	kirre like nephrin family adhesion molecule 2	protein-coding
139621	chr2	225056551	225056930	+	0	NA	Intergenic	Intergenic	-14272	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
6023	chr1	27101371	27101730	+	0	NA	intron (NR_046474, intron 9 of 10)	intron (NR_046474, intron 9 of 10)	53575	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
28083	chr10	43366821	43367280	+	0	NA	Intergenic	MIRc|SINE|MIR	-4586	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
204312	chr7	2698521	2699850	+	0	NA	intron (NM_001321766, intron 1 of 6)	intron (NM_001321766, intron 1 of 6)	10983	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
43372	chr11	76997571	76997800	+	0	NA	intron (NM_018367, intron 6 of 10)	AluJo|SINE|Alu	-36713	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
212931	chr7	130925921	130927220	+	0	NA	Intergenic	Intergenic	13106	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
119673	chr19	40864121	40864730	+	0	NA	Intergenic	Intergenic	-13978	NM_000762	1548		NM_000762	ENSG00000255974	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450 family 2 subfamily A member 6	protein-coding
69290	chr14	93084871	93085030	+	0	NA	intron (NM_014216, intron 2 of 10).2	L2c|LINE|L2	17498	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
190381	chr5	179761071	179761230	+	0	NA	intron (NM_014757, intron 1 of 4)	AluJo|SINE|Alu	28328	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
1197	chr1	2247821	2248430	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	19806	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
43901	chr11	88552551	88552730	+	0	NA	intron (NM_001143831, intron 8 of 9)	intron (NM_001143831, intron 8 of 9)	48064	NR_049724	100873989		NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
93699	chr17	19384621	19385200	+	0	NA	intron (NM_002404, intron 5 of 5)	intron (NM_002404, intron 5 of 5)	2280	NM_001198695	4239		NM_002404	ENSG00000166482	MFAP4	-	microfibril associated protein 4	protein-coding
63818	chr14	21451251	21451800	+	0	NA	intron (NM_001170629, intron 1 of 37)	AluSx3|SINE|Alu	4598	NM_001170629	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
64668	chr14	31937801	31938200	+	0	NA	Intergenic	Intergenic	-6853	NR_146544	105370439		NR_146544	ENSG00000258474	LINC02313	-	long intergenic non-protein coding RNA 2313	ncRNA
203081	chr6	166337821	166338280	+	0	NA	intron (NR_130113, intron 1 of 6)	MLT1A0|LTR|ERVL-MaLR	4495	NR_130113	113402		NM_145169	ENSG00000198818	SFT2D1	C6orf83|pRGR1	SFT2 domain containing 1	protein-coding
113580	chr19	10270701	10272150	+	0	NA	intron (NM_000201, intron 1 of 6)	intron (NM_000201, intron 1 of 6)	305	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
38371	chr11	44622371	44622730	+	0	NA	Intergenic	Intergenic	56887	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
210755	chr7	100682651	100683400	+	0	NA	exon (NM_001375766, exon 23 of 28)	exon (NM_001375766, exon 23 of 28)	9285	NM_005273	2783		NM_005273	ENSG00000172354	GNB2	HG2C1|SSS4|SSS4; NEDHYDF	G protein subunit beta 2	protein-coding
64377	chr14	24142951	24143050	+	0	NA	TTS (NR_106990)	TTS (NR_106990)	565	NR_106990	102465801		NR_106990	ENSG00000283856	MIR7703	hsa-mir-7703	microRNA 7703	ncRNA
34015	chr10	124701951	124703280	+	0	NA	intron (NM_014661, intron 2 of 4)	intron (NM_014661, intron 2 of 4)	-1413	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
42397	chr11	68974501	68975030	+	0	NA	Intergenic	LTR12D|LTR|ERV1	6221	NM_198923	116512		NM_198923	ENSG00000172938	MRGPRD	MRGD|TGR7	MAS related GPR family member D	protein-coding
147027	chr20	53598571	53599850	+	0	NA	Intergenic	Intergenic	-5371	NM_006526	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
222733	chr8	141396601	141397650	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	5104	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
98272	chr17	46196371	46196800	+	0	NA	non-coding (NR_034172, exon 2 of 2)	non-coding (NR_034172, exon 2 of 2)	3012	NR_034172	644246		NR_034172	ENSG00000214401	KANSL1-AS1	-	KANSL1 antisense RNA 1	ncRNA
49145	chr12	14943201	14943750	+	0	NA	intron (NR_135637, intron 3 of 3)	MIR3|SINE|MIR	-4938	NM_152321	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
38902	chr11	47415201	47415400	+	0	NA	exon (NM_001128225, exon 10 of 10)	exon (NM_001128225, exon 10 of 10)	6710	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
35896	chr11	2407901	2408300	+	0	NA	intron (NM_014555, intron 18 of 23)	intron (NM_014555, intron 18 of 23)	7350	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
27854	chr10	40634451	40634590	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1733525	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
113669	chr19	10388771	10389530	+	0	NA	Intergenic	Intergenic	-8578	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
220863	chr8	103406071	103407080	+	0	NA	intron (NM_030780, intron 2 of 6)	intron (NM_030780, intron 2 of 6)	8532	NM_030780	81034		NM_030780	ENSG00000164933	SLC25A32	GLYB|MFT|MFTC|RREI	solute carrier family 25 member 32	protein-coding
74386	chr15	58905901	58906500	+	0	NA	intron (NR_135043, intron 4 of 18)	intron (NR_135043, intron 4 of 18)	27479	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
39950	chr11	62556401	62557450	+	0	NA	Intergenic	Intergenic	3381	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
97163	chr17	42605801	42606000	+	0	NA	intron (NR_026697, intron 1 of 7)	AluSx1|SINE|Alu	3474	NM_178126	162427		NM_178126	ENSG00000141699	RETREG3	FAM134C	reticulophagy regulator family member 3	protein-coding
119774	chr19	41305751	41306530	+	0	NA	intron (NM_144732, intron 14 of 14)	MamRep38|DNA|hAT	-4032	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
14153	chr1	121183371	121183600	+	0	NA	exon (NM_001320149, exon 1 of 4)	exon (NM_001320149, exon 1 of 4)	426	NM_001320149	653820		NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72 member B	protein-coding
76469	chr15	74859201	74859900	+	0	NA	intron (NM_001320778, intron 1 of 9)	intron (NM_001320778, intron 1 of 9)	13815	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
108359	chr18	67514321	67515030	+	0	NA	5' UTR (NM_032160, exon 2 of 2)	5' UTR (NM_032160, exon 2 of 2)	-1871	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
172686	chr4	2752201	2753180	+	0	NA	intron (NM_001292016, intron 1 of 4)	intron (NM_001292016, intron 1 of 4)	3646	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
195992	chr6	41990551	41991150	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx1|SINE|Alu	-49002	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
238357	chrX	149829471	149830800	+	0	NA	intron (NR_109813, intron 1 of 2)	HERVIP10B3-int|LTR|ERV1	4427	NR_109813	101241891		NR_109813	ENSG00000280752	LINC00850	KUCG1	long intergenic non-protein coding RNA 850	ncRNA
223557	chr8	144257621	144258030	+	0	NA	intron (NM_032450, intron 35 of 43)	intron (NM_032450, intron 35 of 43)	4912	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
109125	chr18	80151051	80151350	+	0	NA	intron (NR_028340, intron 1 of 2)	L1MC4|LINE|L1	3276	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
234984	chrX	39613651	39614080	+	0	NA	Intergenic	CpG	-47351	NR_037501	100500822		NR_037501	ENSG00000263730	MIR3937	-	microRNA 3937	ncRNA
224067	chr9	3751221	3751480	+	0	NA	Intergenic	Intergenic	83264	NR_121586	101929302		NR_121586	ENSG00000232104	RFX3-DT	CVAT7|RFX3-AS1	RFX3 divergent transcript	ncRNA
132348	chr2	105738071	105740330	+	0	NA	Intergenic	Intergenic	-5712	NM_003581	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
158821	chr3	9747121	9747630	+	0	NA	non-coding (NR_160918, exon 15 of 15)	non-coding (NR_160918, exon 15 of 15)	-2569	NR_148930	4968		NM_002542	ENSG00000114026	OGG1	HMMH|HOGG1|MUTM|OGH1	8-oxoguanine DNA glycosylase	protein-coding
147249	chr20	57423351	57424000	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-30619	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
212759	chr7	129938321	129938930	+	0	NA	intron (NM_001202498, intron 1 of 6)	AluSp|SINE|Alu	14335	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
332	chr1	994271	994430	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	5747	NM_021170	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
111960	chr19	4821201	4821600	+	0	NA	intron (NM_001385680, intron 1 of 2)	intron (NM_001385680, intron 1 of 2)	10312	NM_001385680	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
95434	chr17	36124951	36125450	+	0	NA	Intergenic	LTR28C|LTR|ERV1	21373	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
180277	chr5	1798351	1798450	+	0	NA	TTS (NM_032479)	TTS (NM_032479)	1437	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
125920	chr2	25038751	25039250	+	0	NA	non-coding (NR_034113, exon 3 of 3)	non-coding (NR_034113, exon 3 of 3)	-3076	NM_014971	22979		NM_014971	ENSG00000084710	EFR3B	KIAA0953	EFR3 homolog B	protein-coding
56553	chr12	116924351	116925080	+	0	NA	intron (NM_153348, intron 1 of 10)	intron (NM_153348, intron 1 of 10)	13759	NM_012174	26259		NM_012174	ENSG00000174989	FBXW8	FBW6|FBW8|FBX29|FBXO29|FBXW6	F-box and WD repeat domain containing 8	protein-coding
108053	chr18	59357601	59360100	+	0	NA	intron (NM_005570, intron 1 of 12)	CpG	415	NM_005570	3998		NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
104913	chr17	81906371	81907130	+	0	NA	intron (NM_001256434, intron 8 of 13)	intron (NM_001256434, intron 8 of 13)	4425	NM_001282204	5833		NM_002861	ENSG00000185813	PCYT2	ET|SPG82	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
95252	chr17	35434601	35434800	+	0	NA	TTS (NM_144682)	TTS (NM_144682)	-1526	NM_001289009	55106		NM_018042	ENSG00000172123	SLFN12	SLFN3	schlafen family member 12	protein-coding
53732	chr12	68632051	68632150	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	-4725	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
169401	chr3	160707351	160707700	+	0	NA	Intergenic	L2b|LINE|L2	30365	NM_025047	80117		NM_025047	ENSG00000179674	ARL14	ARF7	ADP ribosylation factor like GTPase 14	protein-coding
31359	chr10	93495701	93496900	+	0	NA	promoter-TSS (NM_001127182)	promoter-TSS (NM_001127182)	-312	NM_018131	55165		NM_018131	ENSG00000138180	CEP55	C10orf3|CT111|MARCH|URCC6	centrosomal protein 55	protein-coding
35351	chr11	1220921	1221180	+	0	NA	Intergenic	Intergenic	-2016	NM_002458	727897		NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
231054	chr9	129631471	129632000	+	0	NA	intron (NM_001286799, intron 1 of 3)	L2c|LINE|L2	5291	NM_001286799	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
2800	chr1	10939251	10939350	+	0	NA	Intergenic	MIRb|SINE|MIR	27387	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
104282	chr17	80840651	80840750	+	0	NA	intron (NM_020761, intron 10 of 33)	CpG	-35068	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
134528	chr2	143616371	143617050	+	0	NA	intron (NM_018460, intron 11 of 13)	intron (NM_018460, intron 11 of 13)	-320357	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
46515	chr11	128448621	128448880	+	0	NA	Intergenic	Intergenic	73560	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
148820	chr21	8379051	8379350	+	0	NA	intron (NR_003287, intron 2 of 2)	LSU-rRNA_Hsa|rRNA|rRNA	-1465	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
116244	chr19	17572671	17573030	+	0	NA	intron (NM_024656, intron 6 of 11)	L2c|LINE|L2	17201	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
72551	chr15	34385821	34386080	+	0	NA	intron (NM_181077, intron 3 of 15)	intron (NM_181077, intron 3 of 15)	-3800	NR_036050	100302160		NR_036050	ENSG00000221649	MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
67954	chr14	74836621	74836950	+	0	NA	3' UTR (NM_019589, exon 21 of 21)	3' UTR (NM_019589, exon 21 of 21)	39360	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
236826	chrX	79182671	79183050	+	0	NA	Intergenic	Intergenic	38172	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
45480	chr11	118603301	118603700	+	0	NA	TTS (NM_001655)	TTS (NM_001655)	-2936	NM_015157	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
177033	chr4	107183171	107183400	+	0	NA	Intergenic	Intergenic	-146972	NM_014421	27123		NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
222116	chr8	131911301	131911730	+	0	NA	intron (NM_001323555, intron 1 of 22)	intron (NM_001323555, intron 1 of 22)	-5258	NM_001323556	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
30727	chr10	83988551	83988650	+	0	NA	Intergenic	Intergenic	-150909	NM_014394	27069		NM_014394	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
140125	chr2	231529621	231531200	+	0	NA	promoter-TSS (NM_006056)	promoter-TSS (NM_006056)	35	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
18390	chr1	161397201	161397730	+	0	NA	Intergenic	LTR2|LTR|ERV1	-29589	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
201259	chr6	144148851	144149250	+	0	NA	Intergenic	L1MC3|LINE|L1	-1467	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
122610	chr19	49801821	49802500	+	0	NA	intron (NM_130787, intron 15 of 22)	intron (NM_130787, intron 15 of 22)	10294	NR_106857	102465479		NR_106857	ENSG00000276270	MIR6799	hsa-mir-6799	microRNA 6799	ncRNA
183808	chr5	82465301	82465500	+	0	NA	Intergenic	MIRc|SINE|MIR	185938	NM_001017971	92270		NM_001017971		ATP6AP1L	-	ATPase H+ transporting accessory protein 1 like (pseudogene)	pseudo
131257	chr2	96033871	96034350	+	0	NA	intron (NM_001321527, intron 1 of 21)	intron (NM_001321527, intron 1 of 21)	1135	NM_001321530	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
98625	chr17	47802221	47802980	+	0	NA	Intergenic	Intergenic	19194	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
142994	chr20	20357201	20357400	+	0	NA	intron (NM_015585, intron 26 of 26)	intron (NM_015585, intron 26 of 26)	-10804	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
48766	chr12	11545321	11546550	+	0	NA	Intergenic	Intergenic	-2095	NR_033890	338817		NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
121493	chr19	47145501	47146530	+	0	NA	intron (NR_027280, intron 2 of 8)	L2c|LINE|L2	15180	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
216047	chr8	9728771	9729130	+	0	NA	intron (NM_003747, intron 13 of 26)	MLT1A1|LTR|ERVL-MaLR	-12722	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
160204	chr3	23882001	23882600	+	0	NA	intron (NM_003341, intron 3 of 5)	LTR12C|LTR|ERV1	-34245	NM_001253379	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
189055	chr5	170225901	170226180	+	0	NA	Intergenic	Intergenic	-6945	NR_161262	133874		NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
23918	chr1	235030021	235030480	+	0	NA	Intergenic	AluSq2|SINE|Alu	39568	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
124264	chr19	57743671	57743830	+	0	NA	Intergenic	AluSg|SINE|Alu	-3065	NR_145328	284309		NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
25256	chr10	6066151	6066250	+	0	NA	Intergenic	Intergenic	-3833	NM_001308243	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
18365	chr1	161309571	161309730	+	0	NA	intron (NM_001315491, intron 1 of 5)	FLAM_C|SINE|Alu	318	NM_000530	4359		NM_000530	ENSG00000158887	MPZ	CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0	myelin protein zero	protein-coding
37294	chr11	14727321	14727750	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	83731	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
127305	chr2	38758471	38758950	+	0	NA	Intergenic	AluSx|SINE|Alu	-7216	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
214502	chr7	150453171	150454600	+	0	NA	intron (NM_175571, intron 1 of 4)	intron (NM_175571, intron 1 of 4)	3255	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
188123	chr5	150389251	150389500	+	0	NA	intron (NM_001371623, intron 18 of 26)	L1ME4a|LINE|L1	23381	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
135770	chr2	169687401	169688330	+	0	NA	intron (NM_001085447, intron 1 of 8)	THE1A-int|LTR|ERVL-MaLR	6540	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
86651	chr16	67457321	67457580	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	23707	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
12804	chr1	109823201	109823680	+	0	NA	Intergenic	Intergenic	-59517	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
191603	chr6	12060521	12061310	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	48603	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
233515	chrM	5901	7300	+	0	NA	TTS (NR_162149).2	TTS (NR_162149).2	914	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
228315	chr9	98189201	98189600	+	0	NA	intron (NM_052820, intron 1 of 11)	intron (NM_052820, intron 1 of 11)	3237	NM_052820	7464		NM_003389	ENSG00000106789	CORO2A	CLIPINB|IR10|WDR2	coronin 2A	protein-coding
42027	chr11	67430071	67430550	+	0	NA	intron (NM_003952, intron 4 of 14)	AluSx|SINE|Alu	1816	NM_003952	6199		NM_003952	ENSG00000175634	RPS6KB2	KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb	ribosomal protein S6 kinase B2	protein-coding
126484	chr2	28394471	28395080	+	0	NA	promoter-TSS (NR_103831)	promoter-TSS (NR_103831)	-103	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
194083	chr6	31888451	31889180	+	0	NA	intron (NM_025256, intron 9 of 26).4	intron (NM_025256, intron 9 of 26).4	8174	NM_001318833	10919		NM_006709	ENSG00000204371	EHMT2	BAT8|C6orf30|G9A|GAT8|KMT1C|NG36	euchromatic histone lysine methyltransferase 2	protein-coding
195485	chr6	37136371	37136530	+	0	NA	Intergenic	Intergenic	-33702	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
106575	chr18	21747271	21747630	+	0	NA	intron (NM_020774, intron 1 of 20)	MER5A1|DNA|hAT-Charlie	6658	NM_020774	57534		NM_020774	ENSG00000101752	MIB1	DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6	MIB E3 ubiquitin protein ligase 1	protein-coding
211112	chr7	102514171	102514580	+	0	NA	intron (NM_001367767, intron 1 of 20)	intron (NM_001367767, intron 1 of 20)	3402	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
46134	chr11	123040151	123040600	+	0	NA	Intergenic	Intergenic	17781	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
198252	chr6	99423121	99424100	+	0	NA	intron (NM_001322406, intron 1 of 12)	L1MC3|LINE|L1	-1261	NR_125843	101927365		NR_125843		PNISR-AS1	-	PNISR antisense RNA 1	ncRNA
214935	chr7	151678901	151679100	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	-46382	NM_001304531	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
190506	chr5	180470721	180471300	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-23369	NM_001370472	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
123473	chr19	54165771	54165930	+	0	NA	intron (NM_144686, intron 5 of 14).4	intron (NM_144686, intron 5 of 14).4	-6129	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
195618	chr6	37702021	37702480	+	0	NA	Intergenic	L2a|LINE|L2	-4367	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
218182	chr8	41986851	41987780	+	0	NA	intron (NM_001305878, intron 3 of 13)	Tigger3a|DNA|TcMar-Tigger	-64435	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
180026	chr5	1048621	1048880	+	0	NA	Intergenic	Intergenic	14224	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
191953	chr6	16133871	16134380	+	0	NA	intron (NM_013262, intron 2 of 6)	L2a|LINE|L2	5039	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
221385	chr8	123394821	123395900	+	0	NA	intron (NM_014109, intron 1 of 27)	intron (NM_014109, intron 1 of 27)	1087	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
173057	chr4	6003871	6004430	+	0	NA	intron (NM_001364690, intron 2 of 10)	(ATGGTG)n|Simple_repeat|Simple_repeat	14396	NM_001364689	389197		NM_207405	ENSG00000181215	C4orf50	-	chromosome 4 open reading frame 50	protein-coding
145048	chr20	38420151	38420450	+	0	NA	TTS (NR_027241)	TTS (NR_027241)	5030	NR_002910	26776		NR_002910		SNORA71B	RNU71B|U71b	small nucleolar RNA, H/ACA box 71B	snoRNA
25776	chr10	11151871	11152030	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-12931	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
1368	chr1	2512851	2514130	+	0	NA	intron (NM_018216, intron 12 of 18).2	intron (NM_018216, intron 12 of 18).2	13106	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
81245	chr16	4605821	4606080	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	8938	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
24749	chr1	248753851	248754150	+	0	NA	intron (NM_001291283, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	1759	NM_001085474	646627		NM_001085474	ENSG00000259823	LYPD8	-	LY6/PLAUR domain containing 8	protein-coding
124786	chr2	7437951	7438400	+	0	NA	intron (NR_038432, intron 4 of 5)	intron (NR_038432, intron 4 of 5)	16914	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
96180	chr17	39729701	39731380	+	0	NA	promoter-TSS (NM_001330206)	promoter-TSS (NM_001330206)	-8	NM_032339	84299		NM_032339	ENSG00000141741	MIEN1	C17orf37|C35|ORB3|RDX12|XTP4	migration and invasion enhancer 1	protein-coding
78331	chr15	90992971	90993330	+	0	NA	intron (NM_199413, intron 1 of 13)	intron (NM_199413, intron 1 of 13)	1385	NM_199413	9055		NM_003981	ENSG00000198901	PRC1	ASE1|MAP65	protein regulator of cytokinesis 1	protein-coding
149156	chr21	17803351	17803450	+	0	NA	intron (NM_017447, intron 2 of 4)	AluJb|SINE|Alu	-10891	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
165772	chr3	105771971	105772130	+	0	NA	intron (NR_135806, intron 4 of 20)	L1PB2|LINE|L1	95541	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
158243	chr22	50298571	50298730	+	0	NA	intron (NM_001376879, intron 1 of 38)	AluSx|SINE|Alu	1685	NM_001376883	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
53474	chr12	66129301	66129530	+	0	NA	intron (NM_032338, intron 1 of 2)	AluYm1|SINE|Alu	1335	NM_032338	84298		NM_032338	ENSG00000139233	LLPH	C12orf31|hLLP	LLP homolog, long-term synaptic facilitation factor	protein-coding
13069	chr1	111496401	111496650	+	0	NA	intron (NM_001081976, intron 1 of 5)	MER57E1|LTR|ERV1	7108	NM_001302679	140		NM_000677	ENSG00000282608	ADORA3	A3AR	adenosine A3 receptor	protein-coding
127667	chr2	43174151	43175160	+	0	NA	Intergenic	Intergenic	51951	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
231440	chr9	131255751	131258250	+	0	NA	Intergenic	MIR|SINE|MIR	19510	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
133883	chr2	130141701	130142380	+	0	NA	intron (NR_165309, intron 3 of 7)	intron (NR_165309, intron 3 of 7)	3072	NM_207310	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
200900	chr6	139109571	139109730	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-25430	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
217559	chr8	29366671	29367130	+	0	NA	Intergenic	Intergenic	-16216	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
59794	chr13	30345501	30345730	+	0	NA	intron (NR_024464, intron 4 of 4)	MLT1F|LTR|ERVL-MaLR	28299	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
191704	chr6	13666571	13667130	+	0	NA	intron (NM_005493, intron 2 of 13)	Tigger9b|DNA|TcMar-Tigger	44985	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
106462	chr18	14074351	14074450	+	0	NA	non-coding (NR_033354, exon 6 of 6)	non-coding (NR_033354, exon 6 of 6)	58035	NM_145287	162655		NM_145287	ENSG00000175322	ZNF519	HsT2362	zinc finger protein 519	protein-coding
3763	chr1	16675021	16675350	+	0	NA	Intergenic	MER49|LTR|ERV1	-6070	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
158327	chr22	50440821	50441550	+	0	NA	intron (NM_001351641, intron 22 of 23)	intron (NM_001351641, intron 22 of 23)	33743	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
73767	chr15	45525121	45525380	+	0	NA	intron (NR_022014, intron 3 of 5)	Tigger1|DNA|TcMar-Tigger	-2495	NM_013309	7782		NM_013309	ENSG00000104154	SLC30A4	ZNT4|znT-4	solute carrier family 30 member 4	protein-coding
47864	chr12	6635121	6636400	+	0	NA	intron (NM_020400, intron 1 of 1)	intron (NM_020400, intron 1 of 1)	199	NM_020400	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
31157	chr10	90866271	90866430	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	-5624	NM_001104546	10556		NM_006413	ENSG00000148688	RPP30	TSG15	ribonuclease P/MRP subunit p30	protein-coding
136874	chr2	188513971	188514130	+	0	NA	intron (NM_001375951, intron 5 of 15)	(GT)n|Simple_repeat|Simple_repeat	216558	NR_030287	693146		NR_030287	ENSG00000207951	MIR561	MIRN561|hsa-mir-561|mir-561	microRNA 561	ncRNA
203814	chr7	1360551	1360950	+	0	NA	Intergenic	Intergenic	98720	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
115171	chr19	14426871	14427580	+	0	NA	Intergenic	Intergenic	-6081	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
200650	chr6	137037871	137038100	+	0	NA	intron (NM_001278724, intron 1 of 5)	L3|LINE|CR1	6327	NM_001278722	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
87892	chr16	78762301	78762500	+	0	NA	intron (NM_016373, intron 8 of 8)	MER5A1|DNA|hAT-Charlie	662746	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19282	chr1	172749951	172750250	+	0	NA	Intergenic	Intergenic	90997	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
129469	chr2	69576901	69577500	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-57029	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
188770	chr5	157607571	157608230	+	0	NA	Intergenic	L1ME1|LINE|L1	-32125	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
135123	chr2	157421851	157421950	+	0	NA	intron (NM_004288, intron 6 of 7)	intron (NM_004288, intron 6 of 7)	22189	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
192928	chr6	27738271	27738850	+	0	NA	Intergenic	Intergenic	-23184	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
100156	chr17	58577621	58578050	+	0	NA	intron (NM_198393, intron 21 of 32)	intron (NM_198393, intron 21 of 32)	-33507	NM_001368771	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
151942	chr22	19115651	19116200	+	0	NA	intron (NM_001184781, intron 1 of 9)	intron (NM_001184781, intron 1 of 9)	6487	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
87923	chr16	79271951	79273150	+	0	NA	Intergenic	Intergenic	328187	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
95772	chr17	38673901	38674400	+	0	NA	exon (NM_001130677, exon 1 of 1).2	exon (NM_001130677, exon 1 of 1).2	807	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
18020	chr1	160569601	160570200	+	0	NA	intron (NM_003874, intron 1 of 6)	intron (NM_003874, intron 1 of 6)	9596	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
174710	chr4	42638851	42639300	+	0	NA	intron (NM_001105529, intron 1 of 35)	L3|LINE|CR1	18030	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
94287	chr17	28721901	28722700	+	0	NA	promoter-TSS (NR_000010)	promoter-TSS (NR_000010)	-282	NR_000010	26773		NR_000010	ENSG00000238578	SNORD4A	RNU101A|Z17A|mgh18S-121	small nucleolar RNA, C/D box 4A	snoRNA
125452	chr2	12109871	12110450	+	0	NA	intron (NR_110197, intron 3 of 3)	intron (NR_110197, intron 3 of 3)	-88970	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
68382	chr14	79257351	79257530	+	0	NA	intron (NR_158975, intron 16 of 21)	(TGG)n|Simple_repeat|Simple_repeat	-21940	NR_073546	9369		NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
151024	chr21	44505351	44505590	+	0	NA	promoter-TSS (NR_103707)	promoter-TSS (NR_103707)	-574	NR_103707	54082		NR_103707	ENSG00000235890	TSPEAR-AS1	C21orf31	TSPEAR antisense RNA 1	ncRNA
79046	chr16	83021	83430	+	0	NA	exon (NM_001015052, exon 3 of 4)	exon (NM_001015052, exon 3 of 4)	5000	NM_001015052	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
98752	chr17	48082251	48082550	+	0	NA	intron (NM_001127228, intron 1 of 4)	AluY|SINE|Alu	18786	NM_006807	10951		NM_006807	ENSG00000108468	CBX1	CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|Hp1beta|M31|MOD1|p25beta	chromobox 1	protein-coding
227533	chr9	91694171	91694830	+	0	NA	Intergenic	Intergenic	-58155	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
163904	chr3	52529751	52530050	+	0	NA	intron (NM_022908, intron 1 of 13)	intron (NM_022908, intron 1 of 13)	3957	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
60694	chr13	43876451	43876750	+	0	NA	intron (NM_144974, intron 1 of 6)	Tigger13a|DNA|TcMar-Tigger	-2578	NM_001128303	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
158570	chr3	4533771	4533930	+	0	NA	intron (NM_002222, intron 4 of 57)	intron (NM_002222, intron 4 of 57)	40502	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
128285	chr2	54597421	54598330	+	0	NA	intron (NM_178313, intron 1 of 30)	(T)n|Simple_repeat|Simple_repeat	39481	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
156856	chr22	42067021	42067480	+	0	NA	exon (NM_001362848, exon 5 of 10)	exon (NM_001362848, exon 5 of 10)	3562	NM_000262	4668		NM_000262	ENSG00000198951	NAGA	D22S674|GALB	alpha-N-acetylgalactosaminidase	protein-coding
148571	chr21	5017521	5017980	+	0	NA	Intergenic	Intergenic	-4781	NM_001363770	102723996		NM_001363770	ENSG00000277117	LOC102723996	-	ICOS ligand	protein-coding
213016	chr7	131017751	131018700	+	0	NA	intron (NR_109850, intron 3 of 5)	L2a|LINE|L2	88805	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
26007	chr10	12186571	12186730	+	0	NA	intron (NM_001321647, intron 1 of 8)	AluSz|SINE|Alu	9241	NM_014142	11164		NM_014142	ENSG00000165609	NUDT5	YSA1|YSA1H|YSAH1|hNUDT5	nudix hydrolase 5	protein-coding
160810	chr3	33019521	33020180	+	0	NA	intron (NM_000404, intron 12 of 15)	intron (NM_000404, intron 12 of 15)	68206	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
99700	chr17	50851721	50852650	+	0	NA	Intergenic	Intergenic	14169	NM_001243885	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
80034	chr16	1949621	1950780	+	0	NA	intron (NM_005061, intron 4 of 9)	intron (NM_005061, intron 4 of 9)	4489	NM_005061	6123		NM_005061	ENSG00000140986	RPL3L	CMD2D	ribosomal protein L3 like	protein-coding
238851	chrX	154476001	154476200	+	0	NA	3' UTR (NM_017514, exon 33 of 33)	3' UTR (NM_017514, exon 33 of 33)	3157	NM_006014	8270		NM_006014	ENSG00000196976	LAGE3	CVG5|DXS9879E|DXS9951E|ESO3|GAMOS2|ITBA2|Pcc1	L antigen family member 3	protein-coding
219726	chr8	81029851	81030030	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	82128	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
103830	chr17	79393151	79393750	+	0	NA	intron (NM_001082575, intron 2 of 14)	intron (NM_001082575, intron 2 of 14)	122698	NM_001082575	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
163654	chr3	52195121	52195380	+	0	NA	Intergenic	Intergenic	-2833	NM_199166	211		NM_000688	ENSG00000023330	ALAS1	ALAS|ALAS-H|ALAS3|ALASH|MIG4	5'-aminolevulinate synthase 1	protein-coding
68518	chr14	88667571	88667800	+	0	NA	intron (NM_001385116, intron 21 of 42)	LTR41|LTR|ERVL	73265	NM_207662	79882		NM_024824	ENSG00000100722	ZC3H14	MRT56|MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
13603	chr1	116377491	116378480	+	0	NA	intron (NM_001160233, intron 1 of 22)	intron (NM_001160233, intron 1 of 22)	4118	NM_001160233	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
121215	chr19	46617751	46618050	+	0	NA	Intergenic	AluSx|SINE|Alu	7189	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
65146	chr14	45131171	45131530	+	0	NA	intron (NM_002013, intron 1 of 6)	AluSx|SINE|Alu	3131	NM_002013	2287		NM_002013	ENSG00000100442	FKBP3	FKBP-25|FKBP-3|FKBP25|PPIase	FKBP prolyl isomerase 3	protein-coding
64179	chr14	22973421	22974200	+	0	NA	intron (NM_198086, intron 5 of 5)	intron (NM_198086, intron 5 of 5)	3032	NM_198086	84962		NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
42199	chr11	68000371	68000980	+	0	NA	intron (NM_030930, intron 3 of 10)	intron (NM_030930, intron 3 of 10)	3422	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
40441	chr11	64202051	64202350	+	0	NA	intron (NM_001282653, intron 10 of 13)	intron (NM_001282653, intron 10 of 13)	-3720	NM_001382448	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
80817	chr16	3463471	3463630	+	0	NA	intron (NM_001317095, intron 1 of 5)	AluJb|SINE|Alu	5505	NM_001317097	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
183977	chr5	88727851	88727950	+	0	NA	intron (NM_001364331, intron 11 of 11)	intron (NM_001364331, intron 11 of 11)	-36859	NR_152232	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
194389	chr6	32994951	32995250	+	0	NA	Intergenic	Intergenic	14491	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
174567	chr4	40225451	40226730	+	0	NA	intron (NM_001278360, intron 2 of 3)	intron (NM_001278360, intron 2 of 3)	29059	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
162537	chr3	48629051	48629350	+	0	NA	intron (NM_134263, intron 14 of 20)	intron (NM_134263, intron 14 of 20)	4498	NR_106882	102465495		NR_106882	ENSG00000284364	MIR6824	hsa-mir-6824	microRNA 6824	ncRNA
186919	chr5	139598001	139598800	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	37061	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
28756	chr10	62020921	62021180	+	0	NA	intron (NM_032199, intron 4 of 9)	(AT)n|Simple_repeat|Simple_repeat	-28307	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
168115	chr3	138780671	138781830	+	0	NA	intron (NM_006219, intron 2 of 23)	AluJo|SINE|Alu	53678	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
45266	chr11	118004701	118005350	+	0	NA	Intergenic	Intergenic	18631	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
190887	chr6	2749921	2750300	+	0	NA	intron (NM_001347872, intron 1 of 12)	intron (NM_001347872, intron 1 of 12)	812	NM_001012418	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
163753	chr3	52361671	52361830	+	0	NA	exon (NM_015512, exon 30 of 78)	exon (NM_015512, exon 30 of 78)	45431	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
84934	chr16	31286271	31286650	+	0	NA	intron (NM_000632, intron 12 of 29)	L1PA16|LINE|L1	26485	NM_000632	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
63450	chr13	114119471	114120650	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	12563	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
161185	chr3	39133301	39133500	+	0	NA	intron (NR_159496, intron 20 of 28)	intron (NR_159496, intron 20 of 28)	-4806	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
147276	chr20	57495151	57495550	+	0	NA	TTS (NM_001269043)	TTS (NM_001269043)	29517	NM_001269052	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
164233	chr3	56987571	56987930	+	0	NA	intron (NM_001377411, intron 1 of 11)	intron (NM_001377411, intron 1 of 11)	47710	NR_046572	100874200		NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
172263	chr4	1405971	1406330	+	0	NA	exon (NM_001290079, exon 1 of 2)	exon (NM_001290079, exon 1 of 2)	292	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
238965	chrX	155197851	155198280	+	0	NA	intron (NM_001303544, intron 1 of 6)	L1PA3|LINE|L1	1058	NM_001303544	7411		NM_003372	ENSG00000155959	VBP1	HIBBJ46|PFD3|PFDN3|VBP-1	VHL binding protein 1	protein-coding
88964	chr16	87857621	87858280	+	0	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	4054	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
9203	chr1	45617371	45617730	+	0	NA	exon (NM_002482, exon 14 of 15)	exon (NM_002482, exon 14 of 15)	6504	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
33782	chr10	123007121	123009880	+	0	NA	promoter-TSS (NM_001609)	promoter-TSS (NM_001609)	187	NM_001271840	64376		NM_001271840	ENSG00000095574	IKZF5	PEGASUS|THC7|ZNFN1A5	IKAROS family zinc finger 5	protein-coding
141529	chr2	241272301	241273180	+	0	NA	promoter-TSS (NM_203346)	promoter-TSS (NM_203346)	94	NM_203346	3069		NM_005336	ENSG00000115677	HDLBP	HBP|PRO2900|VGL	high density lipoprotein binding protein	protein-coding
228807	chr9	111913821	111914350	+	0	NA	intron (NM_003358, intron 1 of 8)	L1M6B|LINE|L1	17271	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
124422	chr19	58464721	58465380	+	0	NA	Intergenic	Intergenic	-2030	NM_014347	25799		NM_014347	ENSG00000083812	ZNF324	ZF5128|ZNF324A	zinc finger protein 324	protein-coding
39448	chr11	60944921	60945180	+	0	NA	intron (NM_016582, intron 2 of 7)	MLT1G1|LTR|ERVL-MaLR	7126	NM_016582	51296		NM_016582	ENSG00000110446	SLC15A3	OCTP|PHT2|PTR3|hPHT2	solute carrier family 15 member 3	protein-coding
63251	chr13	113943701	113944380	+	0	NA	Intergenic	Intergenic	-15049	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
48823	chr12	12268201	12268600	+	0	NA	Intergenic	Intergenic	-1356	NM_002336	4040		NM_002336	ENSG00000070018	LRP6	ADCAD2|STHAG7	LDL receptor related protein 6	protein-coding
653	chr1	1354611	1356100	+	0	NA	intron (NM_001282584, intron 2 of 8)	CpG-91	3192	NM_001282585	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
167785	chr3	133443401	133443600	+	0	NA	intron (NR_135276, intron 4 of 4)	L2a|LINE|L2	12276	NR_135278	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
40240	chr11	63610671	63611230	+	0	NA	intron (NM_007069, intron 1 of 3)	intron (NM_007069, intron 1 of 3)	3487	NM_007069	11145		NM_007069	ENSG00000176485	PLAAT3	AdPLA|FPLD9|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3	phospholipase A and acyltransferase 3	protein-coding
84047	chr16	29575971	29576530	+	0	NA	intron (NR_135305, intron 1 of 13)	MER91A|DNA|hAT-Tip100	18842	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
48992	chr12	13208471	13208730	+	0	NA	intron (NM_001423, intron 1 of 4)	intron (NM_001423, intron 1 of 4)	11874	NM_001423	2012		NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
127311	chr2	38774701	38774900	+	0	NA	Intergenic	AluJb|SINE|Alu	-3410	NM_024775	79833		NM_024775	ENSG00000152147	GEMIN6	-	gem nuclear organelle associated protein 6	protein-coding
75507	chr15	66403101	66403700	+	0	NA	intron (NM_002755, intron 1 of 10)	intron (NM_002755, intron 1 of 10)	16488	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
179318	chr4	180134071	180134230	+	0	NA	Intergenic	Intergenic	1024999	NR_033918	728081		NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
45806	chr11	119342771	119343330	+	0	NA	intron (NM_031433, intron 9 of 14)	intron (NM_031433, intron 9 of 14)	-2167	NM_001278431	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
89189	chr16	88569621	88571000	+	0	NA	promoter-TSS (NM_001294340)	promoter-TSS (NM_001294340)	-93	NM_001294340	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
32307	chr10	102150921	102151180	+	0	NA	TTS (NM_001288727)	TTS (NM_001288727)	-1126	NM_001284388	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
197565	chr6	79671401	79672080	+	0	NA	intron (NM_031469, intron 1 of 3)	intron (NM_031469, intron 1 of 3)	40411	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
155984	chr22	39914921	39915980	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	-11154	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
143435	chr20	30282771	30283130	+	0	NA	intron (NR_145432, intron 1 of 1)	intron (NR_145432, intron 1 of 1)	3587	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
33991	chr10	124673101	124673930	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-30513	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
55147	chr12	98669721	98670030	+	0	NA	intron (NM_013229, intron 10 of 26)	(CCTCC)n|Simple_repeat|Simple_repeat	24575	NM_181869	317		NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
169688	chr3	172043051	172043300	+	0	NA	intron (NM_001135095, intron 1 of 25)	AluSx1|SINE|Alu	2644	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
56314	chr12	112621571	112621750	+	0	NA	intron (NM_001347952, intron 1 of 21)	L1PA2|LINE|L1	46424	NM_001347952	22895		NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding
158758	chr3	9390221	9390480	+	0	NA	non-coding (NR_132781, exon 2 of 4)	non-coding (NR_132781, exon 2 of 4)	6273	NR_132781	440944		NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
120730	chr19	45348701	45348900	+	0	NA	intron (NM_177417, intron 6 of 12)	intron (NM_177417, intron 6 of 12)	8050	NM_177417	147700		NM_145275	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
60195	chr13	40388501	40389680	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	91916	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
151846	chr22	18536021	18536380	+	0	NA	intron (NR_003563, intron 12 of 14)	intron (NR_003563, intron 12 of 14)	8398	NM_001242313	728229		NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
169415	chr3	161104851	161105350	+	0	NA	promoter-TSS (NM_033169)	promoter-TSS (NM_033169)	-205	NM_033169	8706		NM_003781	ENSG00000169255	B3GALNT1	B3GALANT1|B3GALT3|GLCT3|GLOB|Gb4Cer|P1|beta3Gal-T3|galT3	beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group)	protein-coding
17732	chr1	158958521	158958780	+	0	NA	intron (NM_198930, intron 7 of 7)	L1PA2|LINE|L1	27098	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
172700	chr4	2784351	2784650	+	0	NA	Intergenic	L1PBa|LINE|L1	-8585	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
48781	chr12	11719651	11719950	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	70126	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
21623	chr1	206581721	206582400	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	24896	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
64719	chr14	34331701	34332200	+	0	NA	Intergenic	Intergenic	130290	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
170183	chr3	183697151	183699550	+	0	NA	intron (NM_001351371, intron 1 of 21)	intron (NM_001351371, intron 1 of 21)	532	NM_001351370	55689		NM_018023	ENSG00000163872	YEATS2	FAME4	YEATS domain containing 2	protein-coding
59243	chr13	23902251	23902550	+	0	NA	Intergenic	Intergenic	-4898	NR_104426	387911		NM_001007537	ENSG00000205863	C1QTNF9B	CTRP9B	C1q and TNF related 9B	protein-coding
197472	chr6	75288871	75289030	+	0	NA	intron (NR_040081, intron 1 of 2)	intron (NR_040081, intron 1 of 2)	3936	NR_040081	100506804		NR_040081	ENSG00000225793	TMEM30A-DT	-	TMEM30A divergent transcript	ncRNA
80947	chr16	3857321	3857780	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	22570	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
206276	chr7	29878271	29878500	+	0	NA	intron (NM_001080529, intron 3 of 8)	intron (NM_001080529, intron 3 of 8)	71831	NM_001080529	644150		NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family member 3	protein-coding
60408	chr13	40969601	40970280	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	12342	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
14213	chr1	143194351	143194450	+	0	NA	Intergenic	Intergenic	228192	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
133216	chr2	113177651	113177750	+	0	NA	intron (NM_012455, intron 1 of 16)	intron (NM_012455, intron 1 of 16)	3729	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
122860	chr19	50485121	50485850	+	0	NA	3' UTR (NM_175063, exon 8 of 8)	3' UTR (NM_175063, exon 8 of 8)	-8637	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
60160	chr13	40102851	40103150	+	0	NA	Intergenic	Intergenic	-78809	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
148456	chr20	64013971	64014150	+	0	NA	intron (NM_012469, intron 11 of 20)	AluJb|SINE|Alu	-19667	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
61692	chr13	74052371	74052730	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	81379	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
137855	chr2	200819021	200819900	+	0	NA	intron (NM_001207068, intron 9 of 11)	intron (NM_001207068, intron 9 of 11)	7074	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
236450	chrX	71552321	71552580	+	0	NA	intron (NM_181672, intron 5 of 21)	AluSz6|SINE|Alu	19346	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
178534	chr4	151012751	151013580	+	0	NA	intron (NM_001367550, intron 2 of 56)	intron (NM_001367550, intron 2 of 56)	2102	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
197104	chr6	57096901	57097100	+	0	NA	intron (NM_015555, intron 2 of 13)	AluSx1|SINE|Alu	6812	NM_001257273	26036		NM_015555	ENSG00000112200	ZNF451	COASTER|ZATT|dJ417I1.1	zinc finger protein 451	protein-coding
220714	chr8	101908501	101908700	+	0	NA	intron (NM_001040626, intron 3 of 6)	intron (NM_001040626, intron 3 of 6)	-75832	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
76963	chr15	78148831	78150200	+	0	NA	intron (NM_005530, intron 1 of 10)	CpG	153	NM_005530	3419		NM_005530	ENSG00000166411	IDH3A	RP90	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein-coding
47204	chr12	821301	821500	+	0	NA	intron (NM_018979, intron 2 of 27)	L1MB5|LINE|L1	68477	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
91085	chr17	3433371	3433530	+	0	NA	exon (NM_003554, exon 1 of 1)	exon (NM_003554, exon 1 of 1)	391	NM_003554	8388		NM_003554	ENSG00000127780	OR1E2	OR17-135|OR17-136|OR17-93|OR1E4|OR1E7|OST529	olfactory receptor family 1 subfamily E member 2	protein-coding
73484	chr15	43693001	43694680	+	0	NA	promoter-TSS (NM_001321926)	promoter-TSS (NM_001321926)	-19	NM_001321926	548596		NM_001015001	ENSG00000223572	CKMT1A	CKMT1|U-MtCK|mia-CK	creatine kinase, mitochondrial 1A	protein-coding
219482	chr8	73756121	73756400	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-8552	NM_001164384	27067		NM_014393	ENSG00000040341	STAU2	39K2|39K3	staufen double-stranded RNA binding protein 2	protein-coding
156602	chr22	41542301	41542500	+	0	NA	intron (NM_138338, intron 2 of 6)	intron (NM_138338, intron 2 of 6)	2070	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
188558	chr5	156951251	156951650	+	0	NA	intron (NM_001146726, intron 3 of 7)	intron (NM_001146726, intron 3 of 7)	11776	NM_001146726	91937		NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T cell immunoglobulin and mucin domain containing 4	protein-coding
130662	chr2	86199121	86200500	+	0	NA	intron (NM_145644, intron 1 of 4)	intron (NM_145644, intron 1 of 4)	353	NM_016622	51318		NM_016622	ENSG00000132313	MRPL35	L35mt|MRP-L35|bL35m	mitochondrial ribosomal protein L35	protein-coding
52961	chr12	57466901	57467480	+	0	NA	intron (NM_001160045, intron 6 of 9)	intron (NM_001160045, intron 6 of 9)	7039	NM_001167609	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
161269	chr3	39273871	39274300	+	0	NA	intron (NM_001171174, intron 1 of 1)	intron (NM_001171174, intron 1 of 1)	5951	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
88328	chr16	84507371	84507880	+	0	NA	Intergenic	Intergenic	-2966	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
209746	chr7	87199121	87199530	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	20407	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
95112	chr17	34975021	34975280	+	0	NA	Intergenic	L2a|LINE|L2	-5348	NM_002311	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
10649	chr1	70253421	70253680	+	0	NA	TTS (NR_146810)	TTS (NR_146810)	32170	NM_001350613	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
81032	chr16	4272601	4275900	+	0	NA	Intergenic	Intergenic	-1227	NM_003223	7023		NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding
227281	chr9	89384851	89385300	+	0	NA	intron (NM_001371200, intron 15 of 20)	MLT1J1|LTR|ERVL-MaLR	66224	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
86709	chr16	67545821	67546330	+	0	NA	intron (NM_024519, intron 20 of 21)	intron (NM_024519, intron 20 of 21)	8613	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
156952	chr22	42345421	42345680	+	0	NA	Intergenic	Intergenic	23658	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
32936	chr10	110304021	110305530	+	0	NA	5' UTR (NM_005871, exon 1 of 6)	5' UTR (NM_005871, exon 1 of 6)	145	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
221516	chr8	124640351	124640450	+	0	NA	intron (NM_001363300, intron 3 of 12)	Tigger13a|DNA|TcMar-Tigger	88073	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
194761	chr6	34055071	34055550	+	0	NA	intron (NM_001256811, intron 5 of 9)	intron (NM_001256811, intron 5 of 9)	50657	NM_001256813	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
13970	chr1	120466671	120467030	+	0	NA	non-coding (NR_102404, exon 24 of 24)	non-coding (NR_102404, exon 24 of 24)	-32741	NR_003242	767846		NR_003242	ENSG00000293296	PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo
12264	chr1	100457571	100457730	+	0	NA	intron (NM_001319210, intron 8 of 16)	AluJo|SINE|Alu	-80489	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
128169	chr2	49973901	49974300	+	0	NA	5' UTR (NM_001320157, exon 1 of 3)	5' UTR (NM_001320157, exon 1 of 3)	103	NM_001320157	9378		NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
74361	chr15	58724571	58725130	+	0	NA	intron (NM_001320570, intron 1 of 14)	L1MEc|LINE|L1	24857	NM_001110	102		NM_001110	ENSG00000137845	ADAM10	AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz	ADAM metallopeptidase domain 10	protein-coding
153899	chr22	30301851	30301950	+	0	NA	intron (NM_031937, intron 2 of 8)	intron (NM_031937, intron 2 of 8)	-12395	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
220613	chr8	100923801	100924200	+	0	NA	exon (NM_001135701, exon 5 of 6)	exon (NM_001135701, exon 5 of 6)	26571	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
113819	chr19	10605721	10606280	+	0	NA	intron (NM_001145056, intron 1 of 21)	AluSz|SINE|Alu	3545	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
137961	chr2	201160701	201160900	+	0	NA	exon (NM_001202516, exon 7 of 8)	exon (NM_001202516, exon 7 of 8)	-3008	NR_040030	65072		NR_040030	ENSG00000226312	CFLAR-AS1	ALS2CR10	CFLAR antisense RNA 1	ncRNA
175941	chr4	80492671	80493430	+	0	NA	intron (NM_001206997, intron 2 of 6)	MER74A|LTR|ERVL	157320	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
164581	chr3	65509751	65509850	+	0	NA	intron (NM_001033057, intron 2 of 22)	L1PA2|LINE|L1	-384016	NR_046575	100873983		NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
46635	chr11	128684071	128684430	+	0	NA	intron (NR_135072, intron 1 of 1)	(CCTGCCC)n|Simple_repeat|Simple_repeat	-2285	NM_001271012	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
217712	chr8	30143071	30143230	+	0	NA	intron (NM_001100916, intron 1 of 2)	L1PA16|LINE|L1	1515	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
116877	chr19	18660101	18660750	+	0	NA	intron (NM_001345982, intron 2 of 3)	CpG	15787	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
221831	chr8	128092551	128092650	+	0	NA	intron (NR_003367, intron 6 of 8)	intron (NR_003367, intron 6 of 8)	43448	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
79304	chr16	552001	552450	+	0	NA	intron (NM_005632, intron 10 of 13)	intron (NM_005632, intron 10 of 13)	-8169	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
163248	chr3	50278301	50278500	+	0	NA	promoter-TSS (NM_001304385)	promoter-TSS (NM_001304385)	-687	NM_153215	132228		NM_153215	ENSG00000179564	LSMEM2	C3orf45	leucine rich single-pass membrane protein 2	protein-coding
196943	chr6	52578271	52578530	+	0	NA	intron (NR_103447, intron 2 of 3)	intron (NR_103447, intron 2 of 3)	1102	NR_103447	401264		NR_103446	ENSG00000225791	TRAM2-AS1	-	TRAM2 antisense RNA 1 (head to head)	ncRNA
228586	chr9	104926421	104926900	+	0	NA	intron (NM_005502, intron 1 of 49)	CpG	1495	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
233386	chr9	137534251	137534350	+	0	NA	intron (NM_001098537, intron 8 of 34)	intron (NM_001098537, intron 8 of 34)	16102	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
25116	chr10	3972701	3973250	+	0	NA	Intergenic	Intergenic	-18185	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
87501	chr16	71810921	71811950	+	0	NA	Intergenic	Intergenic	-2601	NM_001128	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
227000	chr9	83673671	83674030	+	0	NA	intron (NM_053067, intron 6 of 9)	AluJb|SINE|Alu	-33985	NR_135839	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
28548	chr10	50600471	50601150	+	0	NA	intron (NM_147156, intron 1 of 10)	L2a|LINE|L2	23146	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
107554	chr18	48802921	48803180	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	132450	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
134153	chr2	134218971	134219930	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-34622	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
194490	chr6	33254721	33254980	+	0	NA	TTS (NR_044997)	TTS (NR_044997)	5314	NR_044997	414765		NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25	ncRNA
180844	chr5	32583451	32584150	+	0	NA	Intergenic	Intergenic	-1757	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
120398	chr19	43752251	43752550	+	0	NA	intron (NM_019108, intron 1 of 13)	intron (NM_019108, intron 1 of 13)	2562	NM_019108	56006		NM_019108	ENSG00000105771	SMG9	C19orf61|F17127_1|HBMS|NEDITPO	SMG9 nonsense mediated mRNA decay factor	protein-coding
124950	chr2	8657321	8657780	+	0	NA	Intergenic	Intergenic	24311	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
212512	chr7	128703671	128703830	+	0	NA	Intergenic	AluJr4|SINE|Alu	-5311	NR_104243	84691		NM_032599	ENSG00000135248	GARIN1B	FAM137A|FAM71F1|GARI-L1|GARIL1|NYD-SP18	golgi associated RAB2 interactor 1B	protein-coding
169293	chr3	158569901	158570100	+	0	NA	intron (NR_104147, intron 1 of 4)	intron (NR_104147, intron 1 of 4)	1066	NR_104147	100996447		NR_104147	ENSG00000243150	MLF1-DT	-	MLF1 divergent transcript	ncRNA
128010	chr2	47070051	47070530	+	0	NA	intron (NM_020458, intron 19 of 19)	intron (NM_020458, intron 19 of 19)	85018	NM_001163561	285051		NM_173649	ENSG00000239605	STPG4	C2orf61|GSE	sperm-tail PG-rich repeat containing 4	protein-coding
14335	chr1	143936471	143936930	+	0	NA	Intergenic	Intergenic	-30723	NM_001372105	440686		NM_001025303	ENSG00000273213	H3-7	H3-2|H3.7|HIST2H3PS2|p06	H3.7 histone (putative)	protein-coding
6145	chr1	27388321	27389200	+	0	NA	Intergenic	MIRb|SINE|MIR	-3862	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
192839	chr6	27143021	27143900	+	0	NA	intron (NM_080593, intron 1 of 1)	intron (NM_080593, intron 1 of 1)	3395	NM_001312653	85236		NM_080593	ENSG00000197903	H2BC12	H2B/S|H2BFAiii|H2BFT|H2BK|HIST1H2BK	H2B clustered histone 12	protein-coding
206249	chr7	29239701	29239930	+	0	NA	intron (NM_001293072, intron 1 of 12)	MER102b|DNA|hAT-Charlie	-30845	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
136247	chr2	174617451	174619130	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	16315	NM_001375837	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
116371	chr19	17930551	17931200	+	0	NA	Intergenic	Intergenic	-2140	NM_001136203	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
228978	chr9	113541421	113541880	+	0	NA	3' UTR (NM_017790, exon 18 of 18)	3' UTR (NM_017790, exon 18 of 18)	5039	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
217441	chr8	28595321	28595580	+	0	NA	Intergenic	Intergenic	-90268	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	ncRNA
221337	chr8	123154571	123155400	+	0	NA	intron (NM_001363151, intron 19 of 19)	LTR41B|LTR|ERVL	-24062	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
22887	chr1	225841301	225841580	+	0	NA	intron (NR_165626, intron 6 of 7)	AluSx1|SINE|Alu	16086	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
136323	chr2	175153221	175153480	+	0	NA	intron (NR_045772, intron 1 of 14)	Tigger3c|DNA|TcMar-Tigger	14359	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
211057	chr7	102461921	102462180	+	0	NA	intron (NM_017621, intron 1 of 2)	intron (NM_017621, intron 1 of 2)	2813	NM_017621	54784		NM_017621	ENSG00000160993	ALKBH4	ABH4	alkB homolog 4, lysine demethylase	protein-coding
98124	chr17	45852551	45853080	+	0	NA	intron (NR_024559, intron 1 of 1)	intron (NR_024559, intron 1 of 1)	7934	NM_175882	162540		NM_175882	ENSG00000185294	SPPL2C	IMP5	signal peptide peptidase like 2C	protein-coding
160660	chr3	31768801	31769100	+	0	NA	intron (NM_001174060, intron 3 of 10)	intron (NM_001174060, intron 3 of 10)	64737	NR_049771	100874206		NR_049771	ENSG00000232490	OSBPL10-AS1	-	OSBPL10 antisense RNA 1	ncRNA
168101	chr3	138460821	138460900	+	0	NA	intron (NR_136409, intron 7 of 22)	intron (NR_136409, intron 7 of 22)	26244	NM_001322834	83850		NM_031913	ENSG00000158220	ESYT3	CHR3SYT|E-Syt3|FAM62C	extended synaptotagmin 3	protein-coding
124600	chr2	892671	892900	+	0	NA	Intergenic	MER21A|LTR|ERVL	12666	NR_110179	101060385		NR_110179		LINC01939	-	long intergenic non-protein coding RNA 1939	ncRNA
229242	chr9	114995971	114996130	+	0	NA	Intergenic	AluSz6|SINE|Alu	-65455	NM_001252290	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
190769	chr6	494071	494950	+	0	NA	intron (NM_018303, intron 25 of 27)	L1ME2z|LINE|L1	102758	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
24597	chr1	246012371	246012600	+	0	NA	intron (NM_001375963, intron 5 of 11)	intron (NM_001375963, intron 5 of 11)	-23934	NM_001375966	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
151879	chr22	18773151	18773450	+	0	NA	TTS (NR_003267)	TTS (NR_003267)	18661	NR_003267	2679		NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
135558	chr2	165203971	165204130	+	0	NA	promoter-TSS (NM_001081676)	promoter-TSS (NM_001081676)	0	NM_001081677	6328		NM_006922	ENSG00000153253	SCN3A	DEE62|EIEE62|FFEVF4|NAC3|Nav1.3	sodium voltage-gated channel alpha subunit 3	protein-coding
46412	chr11	126356501	126357630	+	0	NA	intron (NM_006278, intron 1 of 10)	intron (NM_006278, intron 1 of 10)	1053	NM_001348397	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
85584	chr16	53494921	53495830	+	0	NA	intron (NM_001012398, intron 3 of 9)	intron (NM_001012398, intron 3 of 9)	7834	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
224106	chr9	4596221	4597380	+	0	NA	intron (NR_148445, intron 12 of 13)	MIRb|SINE|MIR	65423	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
195437	chr6	36962101	36962300	+	0	NA	intron (NM_153370, intron 4 of 6)	CpG	7462	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
121080	chr19	45885101	45887730	+	0	NA	promoter-TSS (NM_015649)	promoter-TSS (NM_015649)	-274	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
118702	chr19	38212951	38213050	+	0	NA	intron (NM_001289978, intron 10 of 11)	AluSx1|SINE|Alu	11222	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
102754	chr17	76271311	76273420	+	0	NA	Intergenic	Intergenic	7017	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
130916	chr2	87475071	87475630	+	0	NA	intron (NR_024205, intron 2 of 2)	(GT)n|Simple_repeat|Simple_repeat	5400	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
173112	chr4	6472351	6472650	+	0	NA	5' UTR (NM_020416, exon 1 of 9)	5' UTR (NM_020416, exon 1 of 9)	114	NM_020416	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
44736	chr11	111932651	111933200	+	0	NA	intron (NM_001278542, intron 2 of 5)	intron (NM_001278542, intron 2 of 5)	-4418	NM_001037954	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
29905	chr10	73158951	73159950	+	0	NA	intron (NR_024203, intron 2 of 11)	intron (NR_024203, intron 2 of 11)	8558	NM_007265	11319		NM_007265	ENSG00000122882	ECD	GCR2|HSGT1|SGT1	ecdysoneless cell cycle regulator	protein-coding
160589	chr3	31218871	31219030	+	0	NA	Intergenic	Intergenic	-57163	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
101628	chr17	68212571	68212730	+	0	NA	intron (NM_001346471, intron 1 of 6)	AluSz6|SINE|Alu	6521	NM_001346472	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
214987	chr7	152142951	152143780	+	0	NA	intron (NM_170606, intron 55 of 58)	intron (NM_170606, intron 55 of 58)	68328	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
3751	chr1	16649401	16649830	+	0	NA	non-coding (NR_027504, exon 12 of 14)	non-coding (NR_027504, exon 12 of 14)	4041	NR_027504	11209		NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
108425	chr18	69950521	69950980	+	0	NA	intron (NM_006566, intron 1 of 6)	intron (NM_006566, intron 1 of 6)	-2877	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
189423	chr5	172837621	172838480	+	0	NA	intron (NM_001031711, intron 1 of 9)	intron (NM_001031711, intron 1 of 9)	3799	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
71427	chr14	105602651	105602950	+	0	NA	Intergenic	Intergenic	-18316	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
102903	chr17	76546851	76547630	+	0	NA	Intergenic	Intergenic	7196	NM_001077620	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
23141	chr1	226711901	226713230	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	26610	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
31217	chr10	91415051	91415350	+	0	NA	intron (NM_182765, intron 1 of 20)	(GT)n|Simple_repeat|Simple_repeat	4856	NM_001284274	143279		NM_173497	ENSG00000165338	HECTD2	-	HECT domain E3 ubiquitin protein ligase 2	protein-coding
45281	chr11	118042851	118043200	+	0	NA	intron (NM_001354434, intron 2 of 5)	L1MB7|LINE|L1	-33987	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
41289	chr11	65862751	65862850	+	0	NA	intron (NR_146598, intron 6 of 15)	intron (NR_146598, intron 6 of 15)	2367	NR_146598	80198		NM_025128	ENSG00000172732	MUS81	SLX3	MUS81 structure-specific endonuclease subunit	protein-coding
195896	chr6	41713651	41713950	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	19810	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
23848	chr1	234723471	234726280	+	0	NA	intron (NR_038856, intron 1 of 2)	intron (NR_038856, intron 1 of 2)	833	NR_038856	100506810		NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
236044	chrX	55699921	55700200	+	0	NA	Intergenic	MER41A|LTR|ERV1	-17689	NM_016656	10325		NM_006064	ENSG00000083750	RRAGB	RAGB|bA465E19.1	Ras related GTP binding B	protein-coding
238728	chrX	154211651	154211750	+	0	NA	Intergenic	Intergenic	-8034	NM_000513	2652		NM_000513	ENSG00000268221	OPN1MW	CBBM|CBD|COD5|GCP|GOP|OPN1MW1	opsin 1, medium wave sensitive	protein-coding
102653	chr17	76069771	76069930	+	0	NA	intron (NR_048541, intron 1 of 14)	AluSx|SINE|Alu	2667	NM_014230	6730		NM_014230	ENSG00000167881	SRP68	SCN10	signal recognition particle 68	protein-coding
111254	chr19	3530251	3530550	+	0	NA	intron (NM_001136198, intron 6 of 12)	intron (NM_001136198, intron 6 of 12)	7444	NM_001136198	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
121201	chr19	46595601	46595800	+	0	NA	intron (NM_001370550, intron 1 of 2)	AluSz|SINE|Alu	5216	NM_001370551	100506012		NM_001205281	ENSG00000291145	PPP5D1P	PPP5D1	PPP5 tetratricopeptide repeat domain containing 1, pseudogene	pseudo
181432	chr5	40829451	40829980	+	0	NA	3' UTR (NM_000997, exon 4 of 4)	3' UTR (NM_000997, exon 4 of 4)	3020	NR_002583	619564		NR_002583	ENSG00000212296	SNORD72	HBII-240	small nucleolar RNA, C/D box 72	snoRNA
57603	chr12	122467401	122467800	+	0	NA	Intergenic	AluY|SINE|Alu	33332	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
41938	chr11	67302851	67304650	+	0	NA	intron (NM_017857, intron 1 of 13)	CpG	220	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
63948	chr14	22097621	22098200	+	0	NA	Intergenic	Intergenic	334843	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
203763	chr7	1188971	1189330	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	28365	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
17474	chr1	156714871	156715030	+	0	NA	Intergenic	Intergenic	-9134	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
49644	chr12	28266821	28267300	+	0	NA	intron (NM_001330367, intron 3 of 11)	(TA)n|Simple_repeat|Simple_repeat	-76322	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
57069	chr12	121013821	121014480	+	0	NA	intron (NM_001286198, intron 1 of 6)	AluSx1|SINE|Alu	2337	NM_001286191	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
87429	chr16	70694121	70694580	+	0	NA	intron (NM_001351157, intron 16 of 17)	intron (NM_001351157, intron 16 of 17)	-8297	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
223682	chr8	144410671	144410830	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-1415	NM_013291	29894		NM_013291	ENSG00000071894	CPSF1	CPSF160|HSU37012|MYP27|P/cl.18	cleavage and polyadenylation specific factor 1	protein-coding
195868	chr6	41548201	41548350	+	0	NA	promoter-TSS (NR_126416)	promoter-TSS (NR_126416)	346	NR_126415	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
146421	chr20	49577771	49577930	+	0	NA	Intergenic	Intergenic	-9713	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
19596	chr1	179743071	179743680	+	0	NA	promoter-TSS (NM_001329717)	promoter-TSS (NM_001329717)	84	NM_001329717	148753		NM_173509	ENSG00000143340	FAM163A	C1orf76|NDSP	family with sequence similarity 163 member A	protein-coding
119145	chr19	39381901	39382630	+	0	NA	intron (NM_001384595, intron 13 of 13)	intron (NM_001384595, intron 13 of 13)	8841	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
83407	chr16	27199171	27200280	+	0	NA	Intergenic	Intergenic	-3801	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
171016	chr3	194953051	194953150	+	0	NA	Intergenic	Intergenic	-141488	NR_104188	100874528		NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
236922	chrX	91825151	91825250	+	0	NA	Intergenic	L1PA3|LINE|L1	-10261	NM_001168362	27328		NM_014522	ENSG00000102290	PCDH11X	PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119	protocadherin 11 X-linked	protein-coding
156420	chr22	41203401	41203930	+	0	NA	Intergenic	AluSc5|SINE|Alu	-1647	NM_031488	83746		NM_031488	ENSG00000100395	L3MBTL2	H-l(3)mbt-l|L3MBT	L3MBTL histone methyl-lysine binding protein 2	protein-coding
43523	chr11	82155921	82156280	+	0	NA	intron (NR_120571, intron 3 of 7)	L1HS|LINE|L1	247813	NR_120571	101928989		NR_120571	ENSG00000245832	MIR4300HG	-	MIR4300 host gene	ncRNA
16084	chr1	153535431	153537200	+	0	NA	promoter-TSS (NM_014624)	promoter-TSS (NM_014624)	-324	NM_014624	6277		NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA|S10A6	S100 calcium binding protein A6	protein-coding
106224	chr18	11854601	11855000	+	0	NA	TTS (NM_020412)	TTS (NM_020412)	-2953	NM_001261444	2774		NM_002071	ENSG00000141404	GNAL	DYT25|HG1O	G protein subunit alpha L	protein-coding
160948	chr3	36912151	36913080	+	0	NA	intron (NM_001329998, intron 1 of 23)	intron (NM_001329998, intron 1 of 23)	32439	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
30845	chr10	86519501	86520050	+	0	NA	intron (NM_015045, intron 1 of 18)	intron (NM_015045, intron 1 of 18)	2009	NM_001318328	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
54376	chr12	89766271	89766830	+	0	NA	Intergenic	Intergenic	-57184	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
178086	chr4	140153831	140154830	+	0	NA	promoter-TSS (NM_018717)	promoter-TSS (NM_018717)	-146	NM_018717	55534		NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3	mastermind like transcriptional coactivator 3	protein-coding
55349	chr12	104058721	104058980	+	0	NA	intron (NR_169303, intron 1 of 1)	MER44B|DNA|TcMar-Tigger	5587	NM_001384719	83468		NM_031302	ENSG00000120820	GLT8D2	-	glycosyltransferase 8 domain containing 2	protein-coding
129927	chr2	73630701	73630930	+	0	NA	Intergenic	Intergenic	11607	NM_003960	9027		NM_003960	ENSG00000144035	NAT8	ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510	N-acetyltransferase 8 (putative)	protein-coding
51341	chr12	51389121	51389900	+	0	NA	intron (NM_007210, intron 2 of 11)	intron (NM_007210, intron 2 of 11)	-1807	NM_001267615	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
198130	chr6	90424871	90425930	+	0	NA	Intergenic	L2a|LINE|L2	112658	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
128237	chr2	54454921	54455180	+	0	NA	Intergenic	Intergenic	-1277	NM_003128	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
177500	chr4	114599701	114599900	+	0	NA	intron (NM_001322114, intron 1 of 5)	intron (NM_001322114, intron 1 of 5)	515	NM_001322114	7368		NM_003360	ENSG00000174607	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding
218354	chr8	43058671	43058830	+	0	NA	intron (NR_033698, intron 1 of 7)	AluSc|SINE|Alu	2427	NM_002027	2339		NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, subunit alpha	protein-coding
202302	chr6	157227401	157228550	+	0	NA	Intergenic	Intergenic	95544	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
116908	chr19	18782971	18783600	+	0	NA	TTS (NM_001098482)	TTS (NM_001098482)	8020	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
233501	chr9	138230801	138231100	+	0	NA	non-coding (NR_146178, exon 5 of 15)	non-coding (NR_146178, exon 5 of 15)	14094	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
228301	chr9	98108001	98109700	+	0	NA	intron (NM_014788, intron 2 of 5)	intron (NM_014788, intron 2 of 5)	10372	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
11680	chr1	91833521	91833780	+	0	NA	intron (NR_036634, intron 2 of 17)	AluSz|SINE|Alu	52501	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
63771	chr14	21255401	21255830	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	13827	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
32109	chr10	101214721	101215400	+	0	NA	Intergenic	Intergenic	13900	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
72976	chr15	40581721	40582280	+	0	NA	Intergenic	LTR12|LTR|ERV1	-12249	NM_144508	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
120366	chr19	43617771	43618100	+	0	NA	intron (NM_182498, intron 1 of 2)	AluSx3|SINE|Alu	1694	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
136029	chr2	172460851	172461180	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	5007	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
206027	chr7	26681821	26682230	+	0	NA	intron (NM_003930, intron 11 of 12)	intron (NM_003930, intron 11 of 12)	44154	NR_161201	285941		NR_161201	ENSG00000222004	LINC02860	C7orf71	long intergenic non-protein coding RNA 2860	ncRNA
190835	chr6	1601251	1601930	+	0	NA	Intergenic	CpG	-3941	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
68638	chr14	89899971	89900300	+	0	NA	intron (NM_145231, intron 5 of 5)	L1ME3Cz|LINE|L1	54401	NM_001284268	90141		NM_145231	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
139777	chr2	230222271	230222430	+	0	NA	intron (NM_001378444, intron 1 of 19)	intron (NM_001378444, intron 1 of 19)	-2366	NM_004510	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
37743	chr11	31813851	31815230	+	0	NA	intron (NM_001127612, intron 1 of 12)	intron (NM_001127612, intron 1 of 12)	-1820	NM_001368890	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
209779	chr7	87369221	87369550	+	0	NA	exon (NM_021151, exon 7 of 18)	exon (NM_021151, exon 7 of 18)	23721	NM_001243745	54677		NM_021151	ENSG00000005469	CROT	COT	carnitine O-octanoyltransferase	protein-coding
161137	chr3	38646751	38647050	+	0	NA	intron (NM_198056, intron 1 of 27)	intron (NM_198056, intron 1 of 27)	2787	NM_001354701	6331		NM_000335	ENSG00000183873	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	sodium voltage-gated channel alpha subunit 5	protein-coding
69491	chr14	95507571	95508830	+	0	NA	intron (NM_001384283, intron 1 of 9)	MIR|SINE|MIR	-7660	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
89387	chr16	88803101	88805430	+	0	NA	intron (NM_030928, intron 1 of 9)	intron (NM_030928, intron 1 of 9)	476	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
69805	chr14	99203501	99204430	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	68232	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
77980	chr15	89409951	89410550	+	0	NA	intron (NR_160724, intron 1 of 2)	intron (NR_160724, intron 1 of 2)	10079	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
228034	chr9	95896471	95896830	+	0	NA	intron (NM_001375291, intron 2 of 18)	AluJb|SINE|Alu	-20673	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
203664	chr7	996371	996930	+	0	NA	TTS (NM_001318252)	TTS (NM_001318252)	13469	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
116658	chr19	18345571	18345730	+	0	NA	intron (NM_001329471, intron 2 of 4)	AluJr|SINE|Alu	5052	NM_017712	54858		NM_017712	ENSG00000130517	PGPEP1	PAP-I|PGI|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
192765	chr6	26470071	26470230	+	0	NA	TTS (NM_001197233)	TTS (NM_001197233)	12195	NM_078476	11120		NM_007049	ENSG00000112763	BTN2A1	BK14H9.1|BT2.1|BTF1|BTN2.1|DJ3E1.1	butyrophilin subfamily 2 member A1	protein-coding
88098	chr16	81520601	81521800	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-12702	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
197	chr1	692421	692680	+	0	NA	Intergenic	Intergenic	-5896	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
219995	chr8	89982051	89982630	+	0	NA	intron (NM_001024688, intron 2 of 16)	intron (NM_001024688, intron 2 of 16)	2327	NM_002485	4683		NM_002485	ENSG00000104320	NBN	AT-V1|AT-V2|ATV|NBS|NBS1|P95	nibrin	protein-coding
62987	chr13	112304701	112305100	+	0	NA	Intergenic	Intergenic	-8567	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
39626	chr11	61433721	61433980	+	0	NA	intron (NM_017841, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	3726	NM_017841	54949		NM_017841	ENSG00000167985	SDHAF2	C11orf79|PGL2|PPGL2|SDH5|hSDH5	succinate dehydrogenase complex assembly factor 2	protein-coding
5768	chr1	26494821	26495080	+	0	NA	Intergenic	AluJb|SINE|Alu	22510	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
164306	chr3	57675351	57675850	+	0	NA	intron (NM_152678, intron 1 of 19)	intron (NM_152678, intron 1 of 19)	17477	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
226772	chr9	76472171	76472530	+	0	NA	intron (NM_001490, intron 2 of 3)	intron (NM_001490, intron 2 of 3)	-5991	NM_001097635	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
127817	chr2	44934571	44935130	+	0	NA	intron (NR_147194, intron 2 of 2)	CpG	4038	NR_147194	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
162585	chr3	48681421	48681680	+	0	NA	exon (NM_016453, exon 5 of 13)	exon (NM_016453, exon 5 of 13)	4365	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
6716	chr1	29259221	29260350	+	0	NA	intron (NM_133177, intron 5 of 30)	CpG-782	23263	NM_133177	10076		NM_005704	ENSG00000060656	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	protein tyrosine phosphatase receptor type U	protein-coding
197828	chr6	87851771	87852000	+	0	NA	intron (NR_110869, intron 2 of 4)	intron (NR_110869, intron 2 of 4)	67025	NR_110869	101928911		NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
212133	chr7	116478821	116479100	+	0	NA	Intergenic	(TAGTTTA)n|Simple_repeat|Simple_repeat	-20778	NM_001206747	858		NM_001233	ENSG00000105971	CAV2	CAV	caveolin 2	protein-coding
19792	chr1	182430321	182431200	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-19386	NM_001366934	353299		NM_032267	ENSG00000121446	RGSL1	RGSL|RGSL2	regulator of G protein signaling like 1	protein-coding
95248	chr17	35429351	35429450	+	0	NA	intron (NM_001289009, intron 1 of 3)	intron (NM_001289009, intron 1 of 3)	3100	NM_018042	55106		NM_018042	ENSG00000172123	SLFN12	SLFN3	schlafen family member 12	protein-coding
172757	chr4	2859601	2859800	+	0	NA	intron (NM_001286645, intron 1 of 17)	intron (NM_001286645, intron 1 of 17)	15550	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
220155	chr8	94961751	94962350	+	0	NA	intron (NM_001354515, intron 2 of 9)	MLT1J|LTR|ERVL-MaLR	12490	NR_148909	137682		NM_152416	ENSG00000156170	NDUFAF6	C8orf38|FRTS5|MC1DN17	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein-coding
162359	chr3	47846001	47846200	+	0	NA	intron (NM_014966, intron 11 of 22)	intron (NM_014966, intron 11 of 22)	-3455	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
138005	chr2	201263751	201264150	+	0	NA	intron (NM_033356, intron 1 of 7)	intron (NM_033356, intron 1 of 7)	3414	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
13472	chr1	114574521	114575700	+	0	NA	intron (NM_005872, intron 4 of 6)	AluSx1|SINE|Alu	6505	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
74178	chr15	55405621	55406680	+	0	NA	intron (NR_037923, intron 8 of 15)	AluSx1|SINE|Alu	2209	NM_020739	9236		NM_004748	ENSG00000260916	CCPG1	CPR8	cell cycle progression 1	protein-coding
151436	chr21	46133971	46135030	+	0	NA	Intergenic	(GGGTCA)n|Simple_repeat|Simple_repeat	-16875	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
146233	chr20	48816401	48817080	+	0	NA	intron (NM_020820, intron 1 of 39)	MLT1E1A|LTR|ERVL-MaLR	11259	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
78519	chr15	92944971	92945630	+	0	NA	intron (NM_001042572, intron 10 of 12)	L2|LINE|L2	40901	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
134488	chr2	143278271	143278430	+	0	NA	intron (NM_018460, intron 6 of 13)	MLT1L|LTR|ERVL-MaLR	148931	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
38886	chr11	47391771	47392530	+	0	NA	Intergenic	Intergenic	-8820	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
7934	chr1	37518401	37520430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4649	NR_073090	64769		NM_022756	ENSG00000163875	MEAF6	C1orf149|CENP-28|EAF6|NY-SAR-91	MYST/Esa1 associated factor 6	protein-coding
163267	chr3	50301221	50301480	+	0	NA	intron (NR_047690, intron 1 of 2)	AluSx|SINE|Alu	-1945	NM_001200030	8372		NM_003549	ENSG00000186792	HYAL3	HYAL-3|LUCA-3|LUCA3	hyaluronidase 3	protein-coding
129174	chr2	68159101	68159480	+	0	NA	intron (NM_020143, intron 2 of 6)	intron (NM_020143, intron 2 of 6)	1402	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
59284	chr13	24250501	24250700	+	0	NA	intron (NM_153023, intron 2 of 11)	intron (NM_153023, intron 2 of 11)	3839	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
134615	chr2	144396271	144396630	+	0	NA	exon (NM_001171653, exon 8 of 9)	exon (NM_001171653, exon 8 of 9)	-63381	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
192476	chr6	24936601	24937950	+	0	NA	intron (NM_001286446, intron 1 of 13)	MER20B|DNA|hAT-Charlie	-1315	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
74871	chr15	63565401	63566000	+	0	NA	intron (NR_046342, intron 9 of 15)	L1ME4b|LINE|L1	-31687	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
71846	chr15	22226471	22226830	+	0	NA	Intergenic	Intergenic	-1321	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
173533	chr4	10018771	10020400	+	0	NA	intron (NM_001001290, intron 2 of 12)	MIRb|SINE|MIR	1912	NM_020041	56606		NM_020041	ENSG00000109667	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 member 9	protein-coding
41547	chr11	66294051	66295400	+	0	NA	exon (NM_153266, exon 2 of 2)	exon (NM_153266, exon 2 of 2)	2831	NM_153266	256472		NM_153266	ENSG00000179292	TMEM151A	DYT36|EKD3|TMEM151	transmembrane protein 151A	protein-coding
19981	chr1	184975471	184975980	+	0	NA	Intergenic	L2a|LINE|L2	-1217	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
6683	chr1	29146251	29147000	+	0	NA	Intergenic	Intergenic	-22722	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
199918	chr6	127879351	127879960	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	21426	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
118887	chr19	38683121	38684100	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	35961	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
90233	chr17	700421	701200	+	0	NA	intron (NM_018289, intron 2 of 17)	intron (NM_018289, intron 2 of 17)	14029	NM_018289	55275		NM_018289	ENSG00000141252	VPS53	HCCS1|PCH2E|hVps53L|pp13624	VPS53 subunit of GARP complex	protein-coding
153371	chr22	24497751	24498250	+	0	NA	intron (NM_016327, intron 1 of 9)	intron (NM_016327, intron 1 of 9)	2668	NM_016327	51733		NM_016327	ENSG00000100024	UPB1	BUP1	beta-ureidopropionase 1	protein-coding
204785	chr7	5616871	5617430	+	0	NA	Intergenic	AluSx1|SINE|Alu	24334	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
4724	chr1	23340601	23340800	+	0	NA	intron (NM_001102397, intron 1 of 9).2	intron (NM_001102397, intron 1 of 9).2	3584	NM_001297622	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
176049	chr4	82415951	82416780	+	0	NA	Intergenic	LTR12_|LTR|ERV1	13860	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
31709	chr10	97668171	97668730	+	0	NA	intron (NM_018425, intron 8 of 8)	AluJb|SINE|Alu	18791	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
35701	chr11	1924771	1924930	+	0	NA	intron (NM_001367850, intron 4 of 12)	intron (NM_001367850, intron 4 of 12)	2019	NM_001367843	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
36032	chr11	2921471	2922050	+	0	NA	intron (NM_183233, intron 8 of 10)	CpG	7660	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
52802	chr12	56750021	56750280	+	0	NA	intron (NM_000946, intron 2 of 12)	L2a|LINE|L2	2173	NM_000946	5557		NM_000946	ENSG00000198056	PRIM1	PDIL|p49	DNA primase subunit 1	protein-coding
101386	chr17	67356851	67357350	+	0	NA	intron (NM_174871, intron 2 of 9)	intron (NM_174871, intron 2 of 9)	9477	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
25093	chr10	3886721	3887080	+	0	NA	Intergenic	Intergenic	52950	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
151897	chr22	18903421	18903680	+	0	NA	Intergenic	LTR56|LTR|ERV1	-2770	NM_001368242	8214		NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
111817	chr19	4500221	4500680	+	0	NA	intron (NM_032631, intron 14 of 15)	AluJb|SINE|Alu	18036	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
143370	chr20	26295101	26295300	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-85967	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
124878	chr2	8315851	8316380	+	0	NA	intron (NR_152741, intron 2 of 9)	intron (NR_152741, intron 2 of 9)	12304	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
108316	chr18	63419171	63419530	+	0	NA	intron (NM_004869, intron 1 of 10)	AluSx|SINE|Alu	3126	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
176192	chr4	83483501	83483700	+	0	NA	intron (NM_139076, intron 1 of 8)	intron (NM_139076, intron 1 of 8)	1500	NM_139076	84142		NM_139076	ENSG00000163322	ABRAXAS1	ABRA1|CCDC98|FAM175A	abraxas 1, BRCA1 A complex subunit	protein-coding
12497	chr1	108041401	108042050	+	0	NA	Intergenic	Intergenic	-76545	NM_006113	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
143845	chr20	32524621	32525800	+	0	NA	intron (NM_001256798, intron 2 of 10)	intron (NM_001256798, intron 2 of 10)	15251	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
145106	chr20	38750201	38750550	+	0	NA	intron (NM_024855, intron 2 of 8)	MIR3|SINE|MIR	1915	NM_024855	79913		NM_024855	ENSG00000101442	ACTR5	Arp5|INO80M	actin related protein 5	protein-coding
228850	chr9	112303701	112303900	+	0	NA	intron (NM_001375918, intron 1 of 13)	AluSx4|SINE|Alu	29226	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
226576	chr9	72596821	72597480	+	0	NA	intron (NM_138691, intron 2 of 23)	MamGypsy2-I|LTR|Gypsy	75542	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
1291	chr1	2333601	2333800	+	0	NA	intron (NM_024848, intron 12 of 13)	intron (NM_024848, intron 12 of 13)	18961	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
15380	chr1	150159001	150159350	+	0	NA	exon (NM_001304724, exon 5 of 5)	exon (NM_001304724, exon 5 of 5)	-1553	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
212716	chr7	129796471	129796830	+	0	NA	Intergenic	Intergenic	-21636	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
227057	chr9	83979901	83982000	+	0	NA	promoter-TSS (NM_001318188)	promoter-TSS (NM_001318188)	145	NM_001358291	80010		NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75	RecQ mediated genome instability 1	protein-coding
206138	chr7	27740701	27741600	+	0	NA	intron (NM_006024, intron 1 of 16)	intron (NM_006024, intron 1 of 16)	1055	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
153908	chr22	30311251	30312080	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	15276	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
176343	chr4	88287221	88287480	+	0	NA	intron (NR_134237, intron 1 of 3)	AluJb|SINE|Alu	2420	NR_134236	105369192		NR_134236	ENSG00000246375	PPM1K-DT	-	PPM1K divergent transcript	ncRNA
65022	chr14	39100601	39101730	+	0	NA	intron (NM_006364, intron 1 of 19)	intron (NM_006364, intron 1 of 19)	-1975	NR_146545	105370458		NR_146545	ENSG00000258651	SEC23A-AS1	-	SEC23A antisense RNA 1	ncRNA
176227	chr4	84965821	84966080	+	0	NA	promoter-TSS (NR_152781)	promoter-TSS (NR_152781)	334	NR_152774	404201		NM_205857	ENSG00000180769	WDFY3-AS2	C4orf12|FBI4|NCRNA00247	WDFY3 antisense RNA 2	ncRNA
3582	chr1	16211901	16212850	+	0	NA	intron (NM_153213, intron 1 of 15)	intron (NM_153213, intron 1 of 15)	277	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
170458	chr3	185919351	185919780	+	0	NA	intron (NM_001243879, intron 5 of 7)	intron (NM_001243879, intron 5 of 7)	18449	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
104111	chr17	80284701	80285300	+	0	NA	intron (NM_020954, intron 3 of 16)	MLT1K|LTR|ERVL-MaLR	24148	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
221441	chr8	124171871	124172030	+	0	NA	promoter-TSS (NR_103547)	promoter-TSS (NR_103547)	-428	NR_103547	157376		NM_182525	ENSG00000253868	FER1L6-AS2	C8orf78	FER1L6 antisense RNA 2	ncRNA
217337	chr8	27593201	27593480	+	0	NA	Intergenic	Intergenic	17411	NR_106902	102465508		NR_106902	ENSG00000284280	MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
139799	chr2	230318651	230320150	+	0	NA	Intergenic	Intergenic	-7771	NM_001308163	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
209797	chr7	87853321	87853830	+	0	NA	intron (NM_018843, intron 5 of 11)	L1MD1|LINE|L1	22785	NM_018843	55972		NM_018843	ENSG00000075303	SLC25A40	MCFP	solute carrier family 25 member 40	protein-coding
161028	chr3	37990621	37991250	+	0	NA	intron (NM_015873, intron 1 of 19)	G-rich|Low_complexity|Low_complexity	149	NM_001385038	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
79122	chr16	215351	215950	+	0	NA	intron (NM_018032, intron 3 of 8)	AluSx3|SINE|Alu	13799	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
44532	chr11	107916571	107916980	+	0	NA	Intergenic	LTR1A1|LTR|ERV1	-11673	NM_017516	54734		NM_017516	ENSG00000179331	RAB39A	K28|RAB39	RAB39A, member RAS oncogene family	protein-coding
153658	chr22	28814071	28814430	+	0	NA	Intergenic	AluJr|SINE|Alu	-13678	NM_005080	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
2693	chr1	10634101	10634300	+	0	NA	Intergenic	Intergenic	159250	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
180434	chr5	10452401	10453050	+	0	NA	intron (NM_031916, intron 3 of 4)	intron (NM_031916, intron 3 of 4)	10846	NM_031916	83853		NM_031916	ENSG00000145491	ROPN1L	ASP|LINC01513|RSPH11|TCONS_00009352	rhophilin associated tail protein 1 like	protein-coding
118506	chr19	35952051	35952530	+	0	NA	intron (NR_136525, intron 1 of 4)	intron (NR_136525, intron 1 of 4)	5175	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
143527	chr20	31559851	31561030	+	0	NA	intron (NM_178580, intron 9 of 12)	intron (NM_178580, intron 9 of 12)	12823	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
110252	chr19	1788401	1789600	+	0	NA	exon (NM_138813, exon 24 of 29)	exon (NM_138813, exon 24 of 29)	23276	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
8821	chr1	42954921	42955980	+	0	NA	intron (NM_006516, intron 1 of 9)	AluSx|SINE|Alu	3418	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
100060	chr17	58152821	58153950	+	0	NA	Intergenic	Charlie16a|DNA|hAT-Charlie	-1769	NM_012374	26689		NM_012374	ENSG00000141194	OR4D1	OR17-23|OR4D3|OR4D4P|TPCR16	olfactory receptor family 4 subfamily D member 1	protein-coding
210561	chr7	100343421	100343730	+	0	NA	intron (NR_036570, intron 3 of 16)	AluY|SINE|Alu	-7268	NR_003613	5379		NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
195341	chr6	36625371	36626080	+	0	NA	Intergenic	L2c|LINE|L2	-3213	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
207581	chr7	44953101	44953500	+	0	NA	Intergenic	MSTD-int|LTR|ERVL-MaLR	25715	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
117080	chr19	19110321	19110980	+	0	NA	exon (NM_001321544, exon 8 of 8)	exon (NM_001321544, exon 8 of 8)	27828	NM_017814	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
201216	chr6	143543901	143544630	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	17786	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
159061	chr3	11651871	11652300	+	0	NA	intron (NM_014667, intron 2 of 5)	intron (NM_014667, intron 2 of 5)	-8170	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
63537	chr14	18572951	18573050	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-28117	NM_001013354	440153		NM_001013354	ENSG00000257115	OR11H12	-	olfactory receptor family 11 subfamily H member 12	protein-coding
188921	chr5	160418401	160419880	+	0	NA	promoter-TSS (NM_001364518)	promoter-TSS (NM_001364518)	-59	NM_006425	10569		NM_006425	ENSG00000164609	SLU7	9G8|hSlu7	SLU7 homolog, splicing factor	protein-coding
222159	chr8	132767251	132767550	+	0	NA	intron (NM_001382397, intron 1 of 10)	MLT1I-int|LTR|ERVL-MaLR	-6818	NM_001382401	137835		NM_144649	ENSG00000165071	TMEM71	-	transmembrane protein 71	protein-coding
129402	chr2	68906721	68907100	+	0	NA	Intergenic	Intergenic	-35513	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
162053	chr3	46810451	46810950	+	0	NA	intron (NR_160551, intron 2 of 2)	L3|LINE|CR1	1874	NR_160551	729756		NR_160551		PRSS44P	PRSS44|TESSP-4|TESSP4	serine protease 44, pseudogene	pseudo
189231	chr5	171926271	171926430	+	0	NA	intron (NM_033644, intron 1 of 12)	MIRb|SINE|MIR	80288	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
141738	chr2	241876751	241877350	+	0	NA	Intergenic	Intergenic	-4313	NR_110220	101927289		NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
48465	chr12	9756671	9757100	+	0	NA	intron (NM_001781, intron 1 of 4)	AluJb|SINE|Alu	4016	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
160355	chr3	27770371	27770700	+	0	NA	Intergenic	L1PA3|LINE|L1	-27053	NR_146630	105377007		NR_146630	ENSG00000225548	LINC01980	-	long intergenic non-protein coding RNA 1980	ncRNA
73443	chr15	43226271	43226430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-5332	NM_001114134	2038		NM_000119	ENSG00000166947	EPB42	PA|SPH5	erythrocyte membrane protein band 4.2	protein-coding
106409	chr18	13472221	13472480	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	12403	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
127254	chr2	38696951	38698450	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	31586	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
117201	chr19	19387371	19387900	+	0	NA	intron (NM_001384535, intron 1 of 10)	intron (NM_001384535, intron 1 of 10)	1792	NM_001384518	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
236407	chrX	71183071	71183400	+	0	NA	Intergenic	Intergenic	-31977	NM_001097642	2705		NM_000166	ENSG00000169562	GJB1	CMTX|CMTX1|CX32	gap junction protein beta 1	protein-coding
113420	chr19	9722051	9722150	+	0	NA	Intergenic	LTR10A|LTR|ERV1	-21324	NR_146444	729648		NM_001199814		ZNF812P	ZNF812	zinc finger protein 812, pseudogene	pseudo
208286	chr7	65983201	65983900	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1337	NM_001293105	2990		NM_000181	ENSG00000169919	GUSB	BG|MPS7	glucuronidase beta	protein-coding
84451	chr16	30424471	30424830	+	0	NA	intron (NR_134470, intron 2 of 2)	intron (NR_134470, intron 2 of 2)	-4891	NR_145731	109616959		NR_145731	ENSG00000199787	SNORA80C	-	small nucleolar RNA, H/ACA box 80C	snoRNA
51649	chr12	53038571	53039650	+	0	NA	intron (NM_001300821, intron 12 of 14)	intron (NM_001300821, intron 12 of 14)	-7881	NM_198316	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
55641	chr12	107104371	107105330	+	0	NA	Intergenic	Intergenic	-11301	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
48490	chr12	9829601	9830200	+	0	NA	intron (NM_016523, intron 1 of 5)	intron (NM_016523, intron 1 of 5)	2419	NM_001291822	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
94797	chr17	31157801	31158000	+	0	NA	intron (NM_001042492, intron 2 of 57)	AluY|SINE|Alu	62923	NM_001042492	4763		NM_000267	ENSG00000196712	NF1	NFNS|VRNF|WSS	neurofibromin 1	protein-coding
29229	chr10	69061351	69062230	+	0	NA	Intergenic	Intergenic	-25813	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
149060	chr21	15508701	15509500	+	0	NA	Intergenic	L2c|LINE|L2	-220834	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
226549	chr9	72356201	72357330	+	0	NA	intron (NM_001278243, intron 6 of 6)	intron (NM_001278243, intron 6 of 6)	7791	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
77482	chr15	84570171	84571650	+	0	NA	promoter-TSS (NR_003661)	promoter-TSS (NR_003661)	-115	NR_003661	388165		NM_207382	ENSG00000291027	UBE2Q2P1	UBE2QP1	UBE2Q2 pseudogene 1	pseudo
43202	chr11	75420501	75421330	+	0	NA	intron (NM_001256802, intron 6 of 6)	intron (NM_001256802, intron 6 of 6)	9714	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
218211	chr8	42018651	42018950	+	0	NA	intron (NM_001305878, intron 2 of 13)	AluSx|SINE|Alu	-32950	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
84110	chr16	29659351	29659650	+	0	NA	Intergenic	Intergenic	-3450	NM_001030288	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
132611	chr2	108605771	108606380	+	0	NA	intron (NM_001193488, intron 1 of 9)	MamRep605|LTR?|LTR?	-1072	NM_001193482	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
199692	chr6	122849621	122849880	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	60492	NM_006714	10924		NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	sphingomyelin phosphodiesterase acid like 3A	protein-coding
80769	chr16	3179871	3180230	+	0	NA	Intergenic	Intergenic	-8154	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
191151	chr6	4727751	4728050	+	0	NA	intron (NM_001368125, intron 2 of 8)	intron (NM_001368125, intron 2 of 8)	21762	NM_001368125	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
76072	chr15	72461601	72462550	+	0	NA	intron (NR_135678, intron 1 of 3)	intron (NR_135678, intron 1 of 3)	12164	NR_135678	105370888		NR_135678	ENSG00000261423	TMEM202-AS1	-	TMEM202 antisense RNA 1	ncRNA
28306	chr10	46240101	46240330	+	0	NA	intron (NR_103828, intron 2 of 2)	L1M2|LINE|L1	29393	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
211281	chr7	103061621	103062150	+	0	NA	intron (NM_001111038, intron 1 of 18)	AluY|SINE|Alu	12683	NM_145032	222235		NM_145032	ENSG00000161040	FBXL13	CFAP169|DRC6|Fbl13	F-box and leucine rich repeat protein 13	protein-coding
125771	chr2	23532371	23533330	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	147671	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
209542	chr7	77199121	77200080	+	0	NA	exon (NM_006682, exon 1 of 2)	exon (NM_006682, exon 1 of 2)	219	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
80538	chr16	2774901	2775730	+	0	NA	intron (NM_207013, intron 3 of 4)	intron (NM_207013, intron 3 of 4)	1965	NM_207013	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
70903	chr14	104001071	104001330	+	0	NA	intron (NM_153046, intron 13 of 35)	L1MD2|LINE|L1	-58671	NM_001257268	647286		NM_001257268	ENSG00000227729	RD3L	TDRD9-AS1|TDRD9AS1	RD3 like	protein-coding
25323	chr10	6226271	6226630	+	0	NA	intron (NM_001363545, intron 14 of 14)	(TGTG)n|Simple_repeat|Simple_repeat	23518	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
169326	chr3	159839901	159840100	+	0	NA	5' UTR (NM_001197109, exon 1 of 7)	5' UTR (NM_001197109, exon 1 of 7)	139	NM_001197109	29970		NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
39555	chr11	61123171	61123330	+	0	NA	intron (NM_001346456, intron 7 of 10)	intron (NM_001346456, intron 7 of 10)	20761	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
176076	chr4	82852251	82852780	+	0	NA	intron (NM_001318120, intron 20 of 28)	intron (NM_001318120, intron 20 of 28)	38638	NM_001077207	22872		NM_014933	ENSG00000138674	SEC31A	ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1	SEC31 homolog A, COPII coat complex component	protein-coding
149119	chr21	17608551	17608850	+	0	NA	intron (NM_001130914, intron 2 of 5)	intron (NM_001130914, intron 2 of 5)	-2986	NR_149073	110806272		NR_149073	ENSG00000280594	BTG3-AS1	ASBEL	BTG3 antisense RNA 1	ncRNA
68014	chr14	75126221	75128200	+	0	NA	promoter-TSS (NM_033116)	promoter-TSS (NM_033116)	-162	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
25475	chr10	6924201	6924400	+	0	NA	Intergenic	Intergenic	144702	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
181842	chr5	53004851	53005350	+	0	NA	intron (NR_073107, intron 1 of 28)	intron (NR_073107, intron 1 of 28)	15748	NM_002203	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
90315	chr17	1111171	1111780	+	0	NA	intron (NM_001322840, intron 2 of 22).2	intron (NM_001322840, intron 2 of 22).2	-2373	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
208764	chr7	73540771	73541130	+	0	NA	intron (NM_001707, intron 3 of 5)	AluSz|SINE|Alu	16286	NR_036682	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
131763	chr2	98470951	98471580	+	0	NA	intron (NM_001351429, intron 1 of 23)	OldhAT1|DNA|hAT-Ac	25255	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
98748	chr17	48068651	48069200	+	0	NA	Intergenic	Intergenic	20566	NM_003204	4779		NM_003204	ENSG00000082641	NFE2L1	LCR-F1|NRF-1|NRF1|TCF11	NFE2 like bZIP transcription factor 1	protein-coding
136296	chr2	174777501	174777700	+	0	NA	Intergenic	Intergenic	-13128	NM_000079	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
34831	chr11	301721	302180	+	0	NA	Intergenic	AluSp|SINE|Alu	-2424	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
175675	chr4	76987871	76988650	+	0	NA	intron (NM_001306147, intron 2 of 11)	L2b|LINE|L2	38508	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
4960	chr1	23995571	23995730	+	0	NA	Intergenic	Intergenic	-15323	NM_001191005	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
30510	chr10	79325601	79326130	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-21604	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
221712	chr8	127201121	127201580	+	0	NA	Intergenic	Intergenic	-3723	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
57575	chr12	122265071	122267650	+	0	NA	exon (NM_001351021, exon 1 of 5)	exon (NM_001351021, exon 1 of 5)	134	NM_022916	65082		NM_022916	ENSG00000139719	VPS33A	MPSPS	VPS33A core subunit of CORVET and HOPS complexes	protein-coding
124657	chr2	2690771	2690930	+	0	NA	Intergenic	Intergenic	-359575	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
69780	chr14	99180601	99180800	+	0	NA	intron (NM_022898, intron 2 of 2)	MIRc|SINE|MIR	91497	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
217831	chr8	37574401	37574600	+	0	NA	Intergenic	Intergenic	-53114	NR_121621	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
68837	chr14	91280971	91281330	+	0	NA	intron (NM_001080414, intron 27 of 29)	intron (NM_001080414, intron 27 of 29)	-27270	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
135921	chr2	171686121	171686480	+	0	NA	Intergenic	AluJb|SINE|Alu	-1169	NM_001320882	1781		NM_001378	ENSG00000077380	DYNC1I2	DIC74|DNCI2|IC2|NEDMIBA	dynein cytoplasmic 1 intermediate chain 2	protein-coding
192449	chr6	24905121	24905580	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	5384	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
99350	chr17	49877671	49878030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-29833	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
160967	chr3	37129901	37130300	+	0	NA	intron (NM_001348303, intron 3 of 16)	L1MB7|LINE|L1	14082	NR_168330	100421436		NR_168330		UBE2FP1	-	UBE2F pseudogene 1	pseudo
115973	chr19	17020821	17021080	+	0	NA	intron (NM_015692, intron 2 of 41)	MLT1K|LTR|ERVL-MaLR	5860	NR_165644	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
214569	chr7	150595121	150595580	+	0	NA	Intergenic	Intergenic	27960	NM_018326	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
54866	chr12	95550151	95550730	+	0	NA	intron (NM_032147, intron 1 of 5)	intron (NM_032147, intron 1 of 5)	1036	NM_032147	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
217516	chr8	29227621	29227880	+	0	NA	intron (NM_015254, intron 2 of 39)	AluJr|SINE|Alu	35320	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
53616	chr12	68149601	68149830	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	10025	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
616	chr1	1318651	1318950	+	0	NA	intron (NM_001256463, intron 2 of 14)	intron (NM_001256463, intron 2 of 14)	5860	NM_001256463	54973		NM_017871	ENSG00000127054	INTS11	CPSF3L|CPSF73L|INT11|NEDMLOB|PSF3L|RC-68|RC68	integrator complex subunit 11	protein-coding
38201	chr11	36387401	36388000	+	0	NA	intron (NM_024841, intron 2 of 9)	MIR3|SINE|MIR	11715	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
131664	chr2	97663301	97664900	+	0	NA	promoter-TSS (NM_005735)	promoter-TSS (NM_005735)	-56	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
228782	chr9	111597821	111598800	+	0	NA	intron (NM_001146108, intron 1 of 9)	intron (NM_001146108, intron 1 of 9)	1121	NM_012212	22949		NM_012212	ENSG00000106853	PTGR1	DIG-1|LTB4DH|PGR1|ZADH3	prostaglandin reductase 1	protein-coding
202781	chr6	159076851	159077750	+	0	NA	Intergenic	Intergenic	-32148	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
55010	chr12	96370551	96370850	+	0	NA	intron (NM_002595, intron 1 of 16)	Charlie1b|DNA|hAT-Charlie	29739	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
74003	chr15	52082501	52082930	+	0	NA	Intergenic	Intergenic	30060	NM_020396	10017		NM_020396	ENSG00000137875	BCL2L10	BCL-B|Boo|Diva|bcl2-L-10	BCL2 like 10	protein-coding
208663	chr7	73153371	73153680	+	0	NA	intron (NM_001382494, intron 1 of 8)	AluSx1|SINE|Alu	-1399	NR_003580	100093631		NR_003580	ENSG00000293241	GTF2IP4	GTF2I	general transcription factor IIi pseudogene 4	pseudo
124907	chr2	8482551	8482950	+	0	NA	Intergenic	Intergenic	101042	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
98302	chr17	46238471	46238630	+	0	NA	Intergenic	L1M4|LINE|L1	-13183	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
223033	chr8	143340901	143341580	+	0	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	-6360	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
34138	chr10	128046901	128049000	+	0	NA	intron (NM_001323354, intron 4 of 19)	intron (NM_001323354, intron 4 of 19)	338	NM_001323357	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
195847	chr6	41439201	41439400	+	0	NA	Intergenic	Intergenic	-63144	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
64207	chr14	23051821	23052080	+	0	NA	intron (NM_144985, intron 8 of 12)	intron (NM_144985, intron 8 of 12)	5588	NM_144985	64403		NM_022478	ENSG00000139880	CDH24	CDH11L	cadherin 24	protein-coding
163139	chr3	50139421	50139800	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-15448	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
85543	chr16	53127801	53128200	+	0	NA	intron (NM_001308319, intron 1 of 38)	MIR|SINE|MIR	-3012	NM_001352127	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
100119	chr17	58341951	58342830	+	0	NA	intron (NR_038418, intron 2 of 3)	intron (NR_038418, intron 2 of 3)	5188	NR_038418	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
213353	chr7	135571251	135571750	+	0	NA	intron (NM_001329434, intron 2 of 42)	AluJr|SINE|Alu	13583	NM_015135	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
214680	chr7	150965921	150966250	+	0	NA	intron (NM_172056, intron 2 of 8)	intron (NM_172056, intron 2 of 8)	-10256	NM_172057	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
230117	chr9	127707521	127708230	+	0	NA	intron (NM_001012502, intron 1 of 8)	intron (NM_001012502, intron 1 of 8)	887	NR_145961	286207		NM_001012502	ENSG00000160401	CFAP157	C9orf117	cilia and flagella associated protein 157	protein-coding
101501	chr17	67687871	67688030	+	0	NA	intron (NM_181671, intron 9 of 9)	intron (NM_181671, intron 9 of 9)	-29883	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
211000	chr7	102287601	102288350	+	0	NA	intron (NM_001359228, intron 1 of 8)	intron (NM_001359228, intron 1 of 8)	1107	NM_001359228	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
98971	chr17	48722151	48722680	+	0	NA	promoter-TSS (NM_001282275)	promoter-TSS (NM_001282275)	103	NM_032391	84366		NM_032391	ENSG00000159182	PRAC1	C17orf92|PRAC	PRAC1 small nuclear protein	protein-coding
114186	chr19	11400501	11400800	+	0	NA	intron (NM_001161616, intron 13 of 18)	AluSz|SINE|Alu	-16336	NR_033663	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
8571	chr1	41367771	41368000	+	0	NA	intron (NM_001291281, intron 1 of 2)	AluJr|SINE|Alu	6451	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
50680	chr12	48857501	48858580	+	0	NA	exon (NM_014470, exon 5 of 5)	exon (NM_014470, exon 5 of 5)	-5877	NM_004818	9416		NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
141390	chr2	240822651	240822750	+	0	NA	Intergenic	LTR33|LTR|ERVL	-1297	NM_001379653	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
233628	chrX	514601	514800	+	0	NA	Intergenic	Intergenic	-109644	NM_006883	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
190445	chr5	179851671	179852230	+	0	NA	intron (NM_016175, intron 2 of 6)	AluY|SINE|Alu	6867	NM_016175	51149		NM_016175	ENSG00000161010	MRNIP	C5orf45	MRN complex interacting protein	protein-coding
95951	chr17	39018201	39018600	+	0	NA	Intergenic	MIRc|SINE|MIR	8710	NR_135645	105371766		NR_135645	ENSG00000266013	LINC02079	-	long intergenic non-protein coding RNA 2079	ncRNA
91959	chr17	7385921	7386480	+	0	NA	intron (NM_001251902, intron 7 of 12).2	L2b|LINE|L2	5111	NM_003985	8711		NM_003985	ENSG00000174292	TNK1	KOS1	tyrosine kinase non receptor 1	protein-coding
22688	chr1	223841371	223841530	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	4497	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
73819	chr15	48962751	48964550	+	0	NA	5' UTR (NM_203349, exon 1 of 12)	5' UTR (NM_203349, exon 1 of 12)	269	NM_203349	399694		NM_203349	ENSG00000185634	SHC4	RaLP|SHCD	SHC adaptor protein 4	protein-coding
226988	chr9	83508051	83508530	+	0	NA	intron (NM_174938, intron 1 of 13)	L1ME3A|LINE|L1	30111	NM_001244959	257019		NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
116899	chr19	18764171	18764330	+	0	NA	intron (NM_015321, intron 8 of 13)	intron (NM_015321, intron 8 of 13)	27055	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
37784	chr11	32429971	32430330	+	0	NA	intron (NR_160306, intron 1 of 9)	intron (NR_160306, intron 1 of 9)	663	NM_001198552	7490		NM_000378	ENSG00000184937	WT1	AWT1|GUD|NPHS4|WAGR|WIT-2|WT-1|WT33	WT1 transcription factor	protein-coding
118381	chr19	35725421	35725680	+	0	NA	exon (NM_014727, exon 12 of 37)	exon (NM_014727, exon 12 of 37)	7547	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
156819	chr22	41935021	41935600	+	0	NA	Intergenic	Intergenic	4909	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
33586	chr10	119506041	119506500	+	0	NA	intron (NM_002925, intron 4 of 4)	intron (NM_002925, intron 4 of 4)	30263	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
74669	chr15	61871921	61872180	+	0	NA	intron (NM_017684, intron 76 of 82)	intron (NM_017684, intron 76 of 82)	142132	NR_146448	100506530		NR_146448	ENSG00000259284	LINC02349	-	long intergenic non-protein coding RNA 2349	ncRNA
207306	chr7	44024171	44024500	+	0	NA	Intergenic	Intergenic	-5141	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
185005	chr5	115181451	115181950	+	0	NA	Intergenic	Intergenic	-1154	NM_001017398	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
184403	chr5	98911001	98911600	+	0	NA	intron (NR_157078, intron 2 of 36)	L1MC4|LINE|L1	-17262	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
153877	chr22	30270901	30271330	+	0	NA	Intergenic	Intergenic	-4264	NM_020530	5008		NM_020530	ENSG00000099985	OSM	-	oncostatin M	protein-coding
195525	chr6	37261901	37262100	+	0	NA	intron (NM_017772, intron 1 of 12)	intron (NM_017772, intron 1 of 12)	-3845	NR_104443								
126524	chr2	28470051	28470300	+	0	NA	Intergenic	Intergenic	-25885	NM_153021	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
213059	chr7	131068171	131068330	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	38780	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
7098	chr1	32105271	32106030	+	0	NA	Intergenic	Intergenic	-2406	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
140088	chr2	231451941	231453130	+	0	NA	TTS (NM_005381)	TTS (NM_005381)	3401	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
28937	chr10	63207121	63207700	+	0	NA	exon (NM_001318154, exon 10 of 26)	exon (NM_001318154, exon 10 of 26)	61813	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
147894	chr20	62882501	62882900	+	0	NA	TTS (NR_145839)	TTS (NR_145839)	203	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
67431	chr14	70640601	70643400	+	0	NA	promoter-TSS (NR_110071)	promoter-TSS (NR_110071)	84	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
102115	chr17	75030071	75030500	+	0	NA	Intergenic	LTR14A|LTR|ERVK	-2286	NR_110835	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
223339	chr8	143834951	143836080	+	0	NA	3' UTR (NM_178564, exon 18 of 18)	3' UTR (NM_178564, exon 18 of 18)	2301	NR_106904	102466748		NR_106904	ENSG00000284142	MIR6845	hsa-mir-6845	microRNA 6845	ncRNA
238539	chrX	153744171	153745000	+	0	NA	3' UTR (NM_000033, exon 10 of 10)	3' UTR (NM_000033, exon 10 of 10)	-19611	NM_001163257	5365		NM_005393	ENSG00000198753	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
108537	chr18	74484871	74485300	+	0	NA	Intergenic	Intergenic	-11278	NM_001370249	55748		NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	carnosine dipeptidase 2	protein-coding
151391	chr21	45977751	45977930	+	0	NA	Intergenic	Intergenic	-3930	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
111311	chr19	3612051	3612480	+	0	NA	non-coding (NR_038865, exon 3 of 4)	non-coding (NR_038865, exon 3 of 4)	5018	NR_038865	404665		NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	ncRNA
86217	chr16	58098201	58098400	+	0	NA	Intergenic	Intergenic	31081	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
65392	chr14	50782801	50783780	+	0	NA	intron (NM_020921, intron 5 of 30)	AluJb|SINE|Alu	-38507	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
112364	chr19	5972101	5972500	+	0	NA	intron (NM_003624, intron 1 of 16)	MER5B|DNA|hAT-Charlie	5840	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
150208	chr21	39383471	39384030	+	0	NA	intron (NM_001350296, intron 1 of 4)	AluSx|SINE|Alu	3292	NM_001350294	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
489	chr1	1170701	1171100	+	0	NA	Intergenic	Intergenic	1895	NR_029957	554210		NR_029957	ENSG00000198976	MIR429	MIRN429|hsa-mir-429|mir-429	microRNA 429	ncRNA
49683	chr12	30754321	30755650	+	0	NA	promoter-TSS (NM_001206856)	promoter-TSS (NM_001206856)	-34	NM_001385509	65981		NM_023925	ENSG00000110888	CAPRIN2	C1QDC1|EEG-1|EEG1|RNG140	caprin family member 2	protein-coding
186956	chr5	139660421	139660730	+	0	NA	intron (NM_001317207, intron 1 of 2)	intron (NM_001317207, intron 1 of 2)	1020	NM_001317206	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
66468	chr14	61561001	61561430	+	0	NA	non-coding (NR_110416, exon 4 of 5)	non-coding (NR_110416, exon 4 of 5)	8979	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
177557	chr4	119230421	119230680	+	0	NA	intron (NM_001371399, intron 2 of 16)	MER54A|LTR|ERVL	17837	NM_001371399	54532		NM_019050	ENSG00000145390	USP53	PFIC7	ubiquitin specific peptidase 53	protein-coding
215372	chr7	157404771	157405430	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	-61131	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
113602	chr19	10292001	10293430	+	0	NA	exon (NM_003259, exon 5 of 11)	exon (NM_003259, exon 5 of 11)	2763	NM_003259	7087		NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	intercellular adhesion molecule 5	protein-coding
66100	chr14	59575501	59575700	+	0	NA	intron (NM_001164399, intron 1 of 19)	AluSx|SINE|Alu	1212	NM_001164399	729665		NM_001164399	ENSG00000151838	CCDC175	C14orf38|c14_5395	coiled-coil domain containing 175	protein-coding
28455	chr10	49186951	49187580	+	0	NA	intron (NM_001288741, intron 1 of 4)	intron (NM_001288741, intron 1 of 4)	1126	NM_001353331	170371		NM_001010863	ENSG00000204161	TMEM273	C10orf128	transmembrane protein 273	protein-coding
165451	chr3	98567721	98568750	+	0	NA	Intergenic	Intergenic	25376	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
16043	chr1	152399051	152399350	+	0	NA	Intergenic	Intergenic	15063	NM_016190	49860		NM_016190	ENSG00000143536	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
109088	chr18	79957051	79957150	+	0	NA	Intergenic	AluY|SINE|Alu	-5447	NM_025078	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
7408	chr1	32942921	32943400	+	0	NA	intron (NM_001127361, intron 6 of 8)	AluY|SINE|Alu	21649	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
186606	chr5	138520321	138522000	+	0	NA	intron (NM_004730, intron 2 of 10)	L1MB2|LINE|L1	20551	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
10341	chr1	64919001	64919280	+	0	NA	intron (NM_001321852, intron 1 of 24)	L1PA5|LINE|L1	47409	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
229126	chr9	114466351	114466650	+	0	NA	intron (NM_015404, intron 2 of 11)	intron (NM_015404, intron 2 of 11)	36715	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
136268	chr2	174680121	174680700	+	0	NA	intron (NM_001077269, intron 1 of 7)	MamRTE1|LINE|RTE-BovB	2489	NM_001077269	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
46910	chr11	134227471	134227830	+	0	NA	intron (NM_052875, intron 1 of 5)	intron (NM_052875, intron 1 of 5)	-2189	NM_001372070	23310		NM_015261	ENSG00000151503	NCAPD3	CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6	non-SMC condensin II complex subunit D3	protein-coding
113952	chr19	10761671	10762150	+	0	NA	intron (NM_001005362, intron 2 of 19)	MLT1M|LTR|ERVL-MaLR	-18344	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
237015	chrX	102560601	102561200	+	0	NA	intron (NR_002216, intron 1 of 16)	L2|LINE|L2	10935	NR_002216	55999		NR_002216	ENSG00000290811	NXF4	-	nuclear RNA export factor 4 (pseudogene)	pseudo
129620	chr2	70121001	70121950	+	0	NA	Intergenic	Intergenic	3841	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
23647	chr1	230871701	230872250	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-2384	NM_001136494	84886		NM_032800	ENSG00000119280	C1orf198	-	chromosome 1 open reading frame 198	protein-coding
13734	chr1	116811601	116811830	+	0	NA	Intergenic	MER68|LTR|ERVL	57285	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
17536	chr1	156780371	156780530	+	0	NA	intron (NM_005973, intron 1 of 6)	AluJb|SINE|Alu	12915	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
136252	chr2	174627801	174628000	+	0	NA	intron (NM_001375833, intron 1 of 8)	intron (NM_001375833, intron 1 of 8)	6705	NM_001375837	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
199906	chr6	127867351	127867850	+	0	NA	intron (NM_001164687, intron 1 of 5).2	MLT1J|LTR|ERVL-MaLR	-12412	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
107693	chr18	49486471	49487980	+	0	NA	promoter-TSS (NM_001035005)	promoter-TSS (NM_001035005)	9	NM_001199346	497661		NM_001035005	ENSG00000177576	C18orf32	GPIBD25	chromosome 18 open reading frame 32	protein-coding
11386	chr1	89663551	89663850	+	0	NA	intron (NM_032270, intron 1 of 2)	L1PA7|LINE|L1	30580	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
236561	chrX	72274601	72275500	+	0	NA	intron (NM_001007, intron 4 of 6)	intron (NM_001007, intron 4 of 6)	2198	NM_001007	6191		NM_001007	ENSG00000198034	RPS4X	CCG2|DXS306|RPS4|S4|SCAR|SCR10|eS4	ribosomal protein S4 X-linked	protein-coding
113968	chr19	10806671	10806830	+	0	NA	intron (NM_001005362, intron 13 of 19)	AluSx|SINE|Alu	10746	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
206604	chr7	35810451	35810750	+	0	NA	intron (NM_001788, intron 1 of 12)	AluY|SINE|Alu	9381	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
7007	chr1	31902671	31902900	+	0	NA	Intergenic	AluJr4|SINE|Alu	35033	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
119280	chr19	39661651	39661950	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	5887	NM_001190441	148003		NM_001190441	ENSG00000249861	LGALS16	-	galectin 16	protein-coding
12811	chr1	109910221	109911650	+	0	NA	promoter-TSS (NM_000757)	promoter-TSS (NM_000757)	86	NM_172210	1435		NM_000757	ENSG00000184371	CSF1	CSF-1|MCSF|PG-M-CSF	colony stimulating factor 1	protein-coding
235314	chrX	42940371	42940530	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-162287	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
211042	chr7	102430671	102431200	+	0	NA	Intergenic	Intergenic	-2595	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
96877	chr17	42073701	42074000	+	0	NA	intron (NM_001378270, intron 1 of 8)	intron (NM_001378270, intron 1 of 8)	-23249	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
141103	chr2	238428971	238429430	+	0	NA	intron (NM_001040445, intron 1 of 4)	intron (NM_001040445, intron 1 of 4)	2273	NM_001330196	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
33763	chr10	122541501	122542300	+	0	NA	Intergenic	L1MEi|LINE|L1	-18854	NM_001320644	1755		NM_004406	ENSG00000187908	DMBT1	GP340|SAG|SALSA|muclin	deleted in malignant brain tumors 1	protein-coding
188798	chr5	157918951	157919630	+	0	NA	Intergenic	Intergenic	-60145	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
71153	chr14	105015121	105015930	+	0	NA	intron (NM_017955, intron 1 of 1)	MER89|LTR|ERV1	5558	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
5237	chr1	25006321	25006780	+	0	NA	Intergenic	Intergenic	-16953	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
177779	chr4	122825871	122826030	+	0	NA	promoter-TSS (NM_002006)	promoter-TSS (NM_002006)	-758	NM_002006	2247		NM_002006	ENSG00000138685	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2	protein-coding
199656	chr6	122439021	122439280	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	32657	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
8729	chr1	42682901	42683630	+	0	NA	non-coding (NR_132737, exon 1 of 7)	non-coding (NR_132737, exon 1 of 7)	129	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
1988	chr1	6627121	6627380	+	0	NA	intron (NM_138350, intron 1 of 4)	L2a|LINE|L2	2100	NM_001195752	90326		NM_138350	ENSG00000041988	THAP3	-	THAP domain containing 3	protein-coding
229257	chr9	117071501	117071700	+	0	NA	intron (NM_014010, intron 4 of 21)	L1PA2|LINE|L1	109601	NR_003708	100124538		NR_003708	ENSG00000207268	SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
83176	chr16	23477921	23478250	+	0	NA	intron (NM_015044, intron 13 of 16)	AluSx|SINE|Alu	-24896	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
66931	chr14	65461571	65461930	+	0	NA	intron (NM_004480, intron 2 of 9)	LOR1b|LTR|ERV1	-9352	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
206954	chr7	38259051	38259550	+	0	NA	TTS (NM_001003799)	TTS (NM_001003799)	14347	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
108308	chr18	63400921	63401180	+	0	NA	intron (NM_004869, intron 5 of 10)	intron (NM_004869, intron 5 of 10)	21426	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
239493	chrY	56752721	56753630	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-201080	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
41785	chr11	66850321	66850580	+	0	NA	exon (NM_000920, exon 18 of 22)	exon (NM_000920, exon 18 of 22)	-6614	NM_024036	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
105383	chr17	82711451	82712950	+	0	NA	Intergenic	MER52A|LTR|ERV1	4053	NR_136400	101929552		NR_136400	ENSG00000263063	LOC101929552	-	uncharacterized LOC101929552	ncRNA
167377	chr3	128794271	128794430	+	0	NA	intron (NM_004637, intron 1 of 5)	MIR|SINE|MIR	-52458	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
158566	chr3	4507821	4508100	+	0	NA	intron (NM_002222, intron 2 of 57)	intron (NM_002222, intron 2 of 57)	14612	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
12118	chr1	100046551	100047580	+	0	NA	intron (NM_033055, intron 1 of 11)	L1M2|LINE|L1	8970	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
145118	chr20	38801601	38802400	+	0	NA	Intergenic	L1MB8|LINE|L1	-3697	NM_001172735	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
39320	chr11	59097051	59097450	+	0	NA	Intergenic	Intergenic	-9935	NM_001142704	374393		NM_198947	ENSG00000189057	FAM111B	CANP|POIKTMP	FAM111 trypsin like peptidase B	protein-coding
211199	chr7	102610871	102612530	+	0	NA	intron (NM_001079877, intron 1 of 19)	intron (NM_001079877, intron 1 of 19)	5056	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
99525	chr17	50347471	50347830	+	0	NA	intron (NM_022167, intron 1 of 10)	intron (NM_022167, intron 1 of 10)	1524	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
81597	chr16	10387121	10387650	+	0	NA	intron (NR_045815, intron 1 of 10)	intron (NR_045815, intron 1 of 10)	1324	NM_001352120	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
53049	chr12	57624001	57624400	+	0	NA	3' UTR (NM_001276468, exon 10 of 10)	3' UTR (NM_001276468, exon 10 of 10)	-2297	NR_120450	101927583		NR_120450		LOC101927583	-	uncharacterized LOC101927583	ncRNA
209500	chr7	76933051	76933150	+	0	NA	Intergenic	L2a|LINE|L2	-47722	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
111949	chr19	4797451	4797750	+	0	NA	3' UTR (NM_018708, exon 1 of 1)	3' UTR (NM_018708, exon 1 of 1)	5866	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
129054	chr2	65066851	65067280	+	0	NA	intron (NM_015147, intron 1 of 6)	L1ME4b|LINE|L1	10649	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
119001	chr19	38892671	38892830	+	0	NA	intron (NR_034146, intron 2 of 13)	AluJr|SINE|Alu	1405	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
67968	chr14	74879251	74879350	+	0	NA	Intergenic	AluSg|SINE|Alu	-2616	NR_033814	1743		NM_001933	ENSG00000119689	DLST	DLTS|KGD2|PGL7|PPGL7	dihydrolipoamide S-succinyltransferase	protein-coding
206703	chr7	36513751	36514050	+	0	NA	intron (NM_001637, intron 20 of 20)	MLT1E1A|LTR|ERVL-MaLR	86220	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
7497	chr1	33299651	33299750	+	0	NA	3' UTR (NM_001370212, exon 8 of 8)	3' UTR (NM_001370212, exon 8 of 8)	21398	NM_001080438	127550		NM_001080438	ENSG00000184389	A3GALT2	A3GALT2P|IGB3S|IGBS3S	alpha 1,3-galactosyltransferase 2	protein-coding
181800	chr5	52369551	52369650	+	0	NA	Intergenic	AluYa5|SINE|Alu	361569	NR_147166	105378960		NR_147166	ENSG00000248789	LINC02118	-	long intergenic non-protein coding RNA 2118	ncRNA
16828	chr1	155636771	155638000	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	27167	NM_018116	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
146975	chr20	52973071	52973600	+	0	NA	intron (NM_173485, intron 1 of 2)	CpG	977	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
107794	chr18	51162421	51162880	+	0	NA	Intergenic	Intergenic	35031	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
147260	chr20	57432651	57433340	+	0	NA	Intergenic	Intergenic	-39939	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
119334	chr19	39951701	39951900	+	0	NA	Intergenic	Intergenic	-17174	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
210407	chr7	100014051	100014150	+	0	NA	Intergenic	AluSc|SINE|Alu	-1452	NM_001346579	7586		NM_003439	ENSG00000106261	ZKSCAN1	KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
178121	chr4	141636121	141637330	+	0	NA	non-coding (NR_037840, exon 1 of 8)	non-coding (NR_037840, exon 1 of 8)	142	NR_037840	3600		NM_000585	ENSG00000164136	IL15	IL-15	interleukin 15	protein-coding
187031	chr5	139793401	139794130	+	0	NA	Intergenic	Intergenic	-2043	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
157261	chr22	43884251	43885200	+	0	NA	intron (NM_001371410, intron 6 of 8)	intron (NM_001371410, intron 6 of 8)	7288	NM_138814	150379		NM_138814	ENSG00000100341	PNPLA5	GS2L|dJ388M5|dJ388M5.4	patatin like phospholipase domain containing 5	protein-coding
47410	chr12	2887451	2887750	+	0	NA	intron (NR_046432, intron 3 of 3)	AluSx1|SINE|Alu	-3291	NM_001160408	7289		NM_003324	ENSG00000078246	TULP3	HRCDF|TUBL3	TUB like protein 3	protein-coding
220075	chr8	93974971	93975390	+	0	NA	Intergenic	L2|LINE|L2	58233	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
64333	chr14	23952551	23952650	+	0	NA	intron (NR_023922, intron 1 of 1)	Charlie18a|DNA|hAT-Charlie	-1170	NM_001282987	10901		NM_021004	ENSG00000157326	DHRS4	CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2	dehydrogenase/reductase 4	protein-coding
222373	chr8	133616301	133617230	+	0	NA	Intergenic	MIRb|SINE|MIR	-44878	NM_173344	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
184265	chr5	96718971	96719330	+	0	NA	intron (NM_173060, intron 1 of 28)	intron (NM_173060, intron 1 of 28)	16490	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
187304	chr5	141607551	141608180	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	11135	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
154035	chr22	30474171	30474330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2233	NM_001257378	266629		NM_174975	ENSG00000100012	SEC14L3	TAP2	SEC14 like lipid binding 3	protein-coding
155433	chr22	38457251	38457580	+	0	NA	Intergenic	MIRb|SINE|MIR	-2216	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
54670	chr12	93384201	93384950	+	0	NA	intron (NM_001301023, intron 1 of 4)	MER30|DNA|hAT-Charlie	5997	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
16121	chr1	153646521	153646780	+	0	NA	TTS (NM_001206612)	TTS (NM_001206612)	-12004	NR_052020	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
198874	chr6	109448851	109448950	+	0	NA	intron (NM_022765, intron 11 of 24)	intron (NM_022765, intron 11 of 24)	6872	NM_022765	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
201208	chr6	143529601	143529890	+	0	NA	Intergenic	Intergenic	-18025	NM_032020	2519		NM_032020	ENSG00000001036	FUCA2	dJ20N2.5	alpha-L-fucosidase 2	protein-coding
27161	chr10	28432001	28432700	+	0	NA	TTS (NR_134496)	TTS (NR_134496)	63463	NR_134496	105376468		NR_134496	ENSG00000237128	LINC02652	-	long intergenic non-protein coding RNA 2652	ncRNA
183859	chr5	87127351	87127650	+	0	NA	intron (NR_105018, intron 1 of 3)	intron (NR_105018, intron 1 of 3)	7352	NR_105018	101929380		NR_105018		LOC101929380	-	uncharacterized LOC101929380	ncRNA
77599	chr15	85260301	85260700	+	0	NA	Intergenic	Intergenic	20149	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
172546	chr4	2391151	2391650	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	-26586	NM_001172659	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
135284	chr2	160062171	160062830	+	0	NA	5' UTR (NM_001195641, exon 1 of 30)	5' UTR (NM_001195641, exon 1 of 30)	115	NM_001195641	22925		NM_007366	ENSG00000153246	PLA2R1	CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R	phospholipase A2 receptor 1	protein-coding
193091	chr6	28871651	28872300	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-8298	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
219310	chr8	70113551	70114050	+	0	NA	intron (NM_001321713, intron 21 of 21)	intron (NM_001321713, intron 21 of 21)	-42548	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
88440	chr16	84818601	84818800	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1285	NM_031476	83716		NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2|LGL1	cysteine rich secretory protein LCCL domain containing 2	protein-coding
54521	chr12	92114951	92115400	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	26538	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
224220	chr9	5624121	5624580	+	0	NA	Intergenic	AluJr4|SINE|Alu	-4757	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
9357	chr1	47179021	47179980	+	0	NA	intron (NR_047498, intron 1 of 1)	intron (NR_047498, intron 1 of 1)	250	NR_047498	100874253		NR_047498	ENSG00000224805	LINC00853	PDZK1IP1-AS1|ncRNA-a4	long intergenic non-protein coding RNA 853	ncRNA
132722	chr2	109143621	109145250	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-2847	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
76982	chr15	78265751	78266750	+	0	NA	promoter-TSS (NM_001130183)	promoter-TSS (NM_001130183)	32	NM_001130183	55466		NM_018602	ENSG00000140403	DNAJA4	MST104|MSTP104|PRO1472	DnaJ heat shock protein family (Hsp40) member A4	protein-coding
90109	chr16	90080471	90080630	+	0	NA	Intergenic	AluJb|SINE|Alu	-3219	NM_001098173	11105		NM_052996	ENSG00000126856	PRDM7	PFM4|ZNF910	PR/SET domain 7	protein-coding
205213	chr7	7920451	7920850	+	0	NA	Intergenic	Intergenic	48102	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
222079	chr8	130350921	130351180	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-54517	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
162173	chr3	46989701	46991730	+	0	NA	intron (NM_001365116, intron 6 of 52)	intron (NM_001365116, intron 6 of 52)	2725	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
4273	chr1	19662901	19663480	+	0	NA	Intergenic	Intergenic	-1685	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
19803	chr1	182602801	182603680	+	0	NA	exon (NM_002928, exon 2 of 5)	exon (NM_002928, exon 2 of 5)	1149	NM_002928	6004		NM_002928	ENSG00000143333	RGS16	A28-RGS14|A28-RGS14P|RGS-R	regulator of G protein signaling 16	protein-coding
27868	chr10	41852851	41852950	+	0	NA	Intergenic	Intergenic	515145	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
174326	chr4	38670121	38670450	+	0	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-5657	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
213146	chr7	131506001	131506200	+	0	NA	intron (NM_005397, intron 6 of 7)	intron (NM_005397, intron 6 of 7)	50528	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
215805	chr8	2266101	2266850	+	0	NA	Intergenic	CpG	189886	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
75840	chr15	69468071	69470550	+	0	NA	Intergenic	MIR3|SINE|MIR	16492	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
205982	chr7	26177601	26177800	+	0	NA	intron (NM_004289, intron 1 of 3)	intron (NM_004289, intron 1 of 3)	23046	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
113640	chr19	10335821	10336080	+	0	NA	exon (NM_002162, exon 3 of 7)	exon (NM_002162, exon 3 of 7)	-2421	NM_001366174	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
70206	chr14	100566171	100566530	+	0	NA	intron (NM_001385102, intron 1 of 6)	intron (NM_001385102, intron 1 of 6)	1951	NM_001385100	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
212708	chr7	129781071	129781300	+	0	NA	Intergenic	CpG	-6171	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
98081	chr17	45579401	45579600	+	0	NA	Intergenic	Intergenic	22362	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
135330	chr2	160373171	160374180	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	34207	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
113996	chr19	10839701	10839900	+	0	NA	Intergenic	AluJb|SINE|Alu	-3588	NM_006858	11018		NM_006858	ENSG00000099203	TMED1	IL1RL1LG|Il1rl1l|Tp24|p24g1	transmembrane p24 trafficking protein 1	protein-coding
153916	chr22	30318471	30318630	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	8391	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
215661	chr8	579901	580100	+	0	NA	Intergenic	Intergenic	-34220	NM_175075	157695		NM_175075	ENSG00000180190	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
64654	chr14	31456671	31457880	+	0	NA	intron (NM_080664, intron 1 of 2)	CpG	231	NM_080664	112487		NM_080664	ENSG00000129480	DTD2	ATD|C14orf126	D-aminoacyl-tRNA deacylase 2	protein-coding
168045	chr3	136922821	136923480	+	0	NA	intron (NM_001291999, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	-7352	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
221621	chr8	125698401	125699200	+	0	NA	Intergenic	Intergenic	252397	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
26831	chr10	24622001	24623430	+	0	NA	intron (NM_001367453, intron 7 of 24)	intron (NM_001367453, intron 7 of 24)	128	NR_160025	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
134891	chr2	149006751	149006930	+	0	NA	intron (NM_004522, intron 22 of 25)	intron (NM_004522, intron 22 of 25)	-31627	NM_001317005	130576		NM_177964	ENSG00000150556	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
76791	chr15	77020721	77021000	+	0	NA	intron (NR_135552, intron 3 of 11)	intron (NR_135552, intron 3 of 11)	25734	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
188766	chr5	157599651	157599950	+	0	NA	Intergenic	MER119|DNA|hAT-Charlie	-24025	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
92845	chr17	16218771	16219500	+	0	NA	intron (NM_004278, intron 1 of 6)	AluY|SINE|Alu	1925	NM_004278	9487		NM_004278	ENSG00000108474	PIGL	CHIME	phosphatidylinositol glycan anchor biosynthesis class L	protein-coding
111588	chr19	4083851	4084950	+	0	NA	Intergenic	Intergenic	-17501	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
67324	chr14	69628221	69628480	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	16754	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
227177	chr9	87498351	87498450	+	0	NA	promoter-TSS (NM_001288729)	promoter-TSS (NM_001288729)	-135	NM_001288729	1612		NM_004938	ENSG00000196730	DAPK1	DAPK|ROCO3	death associated protein kinase 1	protein-coding
26138	chr10	13791301	13792380	+	0	NA	intron (NM_018027, intron 5 of 24)	intron (NM_018027, intron 5 of 24)	-84273	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
105089	chr17	82117251	82117550	+	0	NA	intron (NM_001367828, intron 16 of 16)	AluJb|SINE|Alu	-19164	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
235087	chrX	40223071	40223230	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-39767	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
225964	chr9	41117371	41117730	+	0	NA	intron (NR_147036, intron 2 of 6)	SATR1|Satellite|Satellite	7264	NR_147036	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
186992	chr5	139712971	139713650	+	0	NA	Intergenic	Intergenic	32913	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
211924	chr7	112456171	112456330	+	0	NA	intron (NR_120333, intron 3 of 11)	intron (NR_120333, intron 3 of 11)	4192	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
158598	chr3	4824451	4824950	+	0	NA	intron (NM_002222, intron 56 of 57)	intron (NM_002222, intron 56 of 57)	-73110	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
118518	chr19	35996501	35996900	+	0	NA	TTS (NM_001042631)	TTS (NM_001042631)	1512	NM_001042631	644096		NM_001042631	ENSG00000205138	SDHAF1	LYRM8|MC2DN2	succinate dehydrogenase complex assembly factor 1	protein-coding
200391	chr6	134315871	134316230	+	0	NA	intron (NM_001143676, intron 1 of 13)	intron (NM_001143676, intron 1 of 13)	2008	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
52793	chr12	56718421	56719400	+	0	NA	exon (NM_001365896, exon 3 of 9)	exon (NM_001365896, exon 3 of 9)	6389	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
108971	chr18	79616921	79617980	+	0	NA	Intergenic	CpG	38168	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
122972	chr19	50792871	50793030	+	0	NA	intron (NM_033068, intron 6 of 10)	AluJo|SINE|Alu	2535	NM_033068	93650		NM_033068	ENSG00000142513	ACP4	ACPT|AI1J	acid phosphatase 4	protein-coding
167520	chr3	129277051	129277430	+	0	NA	intron (NM_016128, intron 23 of 23)	intron (NM_016128, intron 23 of 23)	-1592	NM_001370345	56941		NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine binding, ES cell specific	protein-coding
35921	chr11	2429221	2429630	+	0	NA	Intergenic	(GTG)n|Simple_repeat|Simple_repeat	-6380	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
31929	chr10	100535201	100536550	+	0	NA	promoter-TSS (NM_017902)	promoter-TSS (NM_017902)	-68	NM_017902	55662		NM_017902	ENSG00000166135	HIF1AN	FIH1	hypoxia inducible factor 1 subunit alpha inhibitor	protein-coding
63104	chr13	113299521	113299780	+	0	NA	intron (NM_005561, intron 1 of 8)	AluSg|SINE|Alu	2411	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
84623	chr16	30703771	30704330	+	0	NA	intron (NM_006662, intron 3 of 33)	intron (NM_006662, intron 3 of 33)	4879	NM_006662	10847		NM_006662	ENSG00000080603	SRCAP	DEHMBA|DOMO1|EAF1|FLHS|SWR1	Snf2 related CREBBP activator protein	protein-coding
64215	chr14	23061051	23061380	+	0	NA	intron (NM_014977, intron 17 of 18)	intron (NM_014977, intron 17 of 18)	3555	NR_169511	105370705		NR_169511	ENSG00000288795	LOC105370705	-	collagen alpha-2(I) chain-like	ncRNA
188284	chr5	151131101	151131830	+	0	NA	intron (NM_001193544, intron 9 of 24)	intron (NM_001193544, intron 9 of 24)	10219	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
9887	chr1	54354951	54355250	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	51294	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
45593	chr11	118891921	118893480	+	0	NA	promoter-TSS (NM_032966)	promoter-TSS (NM_032966)	-692	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
192629	chr6	26128021	26128580	+	0	NA	Intergenic	Intergenic	4128	NM_003512	8334		NM_003512	ENSG00000180573	H2AC6	H2A/l|H2AFL|HIST1H2AC|dJ221C16.4	H2A clustered histone 6	protein-coding
217508	chr8	29137351	29137450	+	0	NA	intron (NM_015254, intron 21 of 39)	intron (NM_015254, intron 21 of 39)	125670	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
204399	chr7	3042151	3042400	+	0	NA	intron (NM_001324281, intron 1 of 25)	L1MB3|LINE|L1	1592	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
115235	chr19	14510551	14511660	+	0	NA	Intergenic	AluSz|SINE|Alu	6757	NM_001300914	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
134397	chr2	137838551	137838800	+	0	NA	Intergenic	Intergenic	89257	NR_120402	101928273		NR_120402		LOC101928273	-	uncharacterized LOC101928273	ncRNA
181214	chr5	39171001	39171200	+	0	NA	intron (NM_199335, intron 2 of 17)	AluSx|SINE|Alu	48463	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
200897	chr6	139031621	139032350	+	0	NA	intron (NM_021243, intron 1 of 2)	AluY|SINE|Alu	3240	NM_021243	58527		NM_021243	ENSG00000146386	ABRACL	C6orf115|Costars|HSPC280|PRO2013	ABRA C-terminal like	protein-coding
130899	chr2	87453851	87454180	+	0	NA	Intergenic	Intergenic	-1412	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
162720	chr3	49012251	49012550	+	0	NA	exon (NM_018031, exon 2 of 6)	exon (NM_018031, exon 2 of 6)	4795	NM_001320547	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
99899	chr17	56839351	56839450	+	0	NA	intron (NM_003647, intron 2 of 11)	intron (NM_003647, intron 2 of 11)	5249	NM_003647	8526		NM_003647	ENSG00000153933	DGKE	AHUS7|DAGK5|DAGK6|DGK|NPHS7	diacylglycerol kinase epsilon	protein-coding
16730	chr1	155254071	155254230	+	0	NA	exon (NM_001267608, exon 2 of 11)	exon (NM_001267608, exon 2 of 11)	1333	NM_001267608	10712		NM_006589	ENSG00000160767	ENTREP3	C1orf2|COTE1|FAM189B	endosomal transmembrane epsin interactor 3	protein-coding
69618	chr14	97619251	97619630	+	0	NA	Intergenic	Intergenic	67218	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
3493	chr1	16026421	16027230	+	0	NA	intron (NM_004070, intron 7 of 19)	intron (NM_004070, intron 7 of 19)	4789	NM_001257139	1187		NM_004070	ENSG00000186510	CLCNKA	CLCK1|ClC-K1|hClC-Ka	chloride voltage-gated channel Ka	protein-coding
10193	chr1	61745901	61746300	+	0	NA	intron (NM_176877, intron 1 of 42)	AluSz6|SINE|Alu	3620	NM_176877	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
101838	chr17	73823471	73823930	+	0	NA	non-coding (NR_027146, exon 2 of 4)	non-coding (NR_027146, exon 2 of 4)	4837	NR_027146	283982		NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
87353	chr16	70369801	70370600	+	0	NA	intron (NM_018332, intron 9 of 11)	intron (NM_018332, intron 9 of 11)	23297	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
43914	chr11	90202151	90202580	+	0	NA	3' UTR (NM_012124, exon 11 of 11).2	3' UTR (NM_012124, exon 11 of 11).2	20684	NM_012124	26973		NM_012124	ENSG00000110172	CHORDC1	CHP1	cysteine and histidine rich domain containing 1	protein-coding
111976	chr19	4867111	4868680	+	0	NA	promoter-TSS (NM_001164189)	promoter-TSS (NM_001164189)	-228	NM_001164189	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
170575	chr3	186822451	186822550	+	0	NA	intron (NR_125409, intron 3 of 3)	AluSc|SINE|Alu	3021	NR_125409	102724699		NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
2743	chr1	10673451	10673850	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	122996	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
110268	chr19	1808751	1808850	+	0	NA	intron (NR_047593, intron 4 of 28)	intron (NR_047593, intron 4 of 28)	3476	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
5553	chr1	25878851	25879150	+	0	NA	Intergenic	Intergenic	-3292	NM_178422	164091		NM_178422	ENSG00000182749	PAQR7	MPRA|PGLP|mSR	progestin and adipoQ receptor family member 7	protein-coding
137522	chr2	197197701	197198300	+	0	NA	promoter-TSS (NR_135584)	promoter-TSS (NR_135584)	9	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
107288	chr18	44722221	44722480	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	21475	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
21047	chr1	203216101	203216580	+	0	NA	non-coding (NR_045785, exon 12 of 12)	non-coding (NR_045785, exon 12 of 12)	13333	NR_045785	1118		NM_003465	ENSG00000133063	CHIT1	CHI3|CHIT|CHITD	chitinase 1	protein-coding
188330	chr5	151226201	151226830	+	0	NA	Intergenic	AluSx|SINE|Alu	-2423	NM_015621	26112		NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
152304	chr22	20326821	20327180	+	0	NA	Intergenic	L1M4|LINE|L1	-6940	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
176156	chr4	83219471	83220180	+	0	NA	Intergenic	Intergenic	64973	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
195919	chr6	41775771	41776350	+	0	NA	intron (NM_006653, intron 3 of 6)	intron (NM_006653, intron 3 of 6)	3840	NM_006653	10817		NM_006653	ENSG00000137218	FRS3	FRS2-beta|FRS2B|FRS2beta|SNT-2|SNT2	fibroblast growth factor receptor substrate 3	protein-coding
39065	chr11	47977071	47977380	+	0	NA	Intergenic	Intergenic	-3334	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
239215	chrY	12929021	12929280	+	0	NA	Intergenic	AluSx|SINE|Alu	23445	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
200436	chr6	135022351	135023050	+	0	NA	intron (NM_001363686, intron 4 of 18)	intron (NM_001363686, intron 4 of 18)	32122	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
153662	chr22	28829051	28829720	+	0	NA	Intergenic	Charlie18a|DNA|hAT-Charlie	-28813	NM_005080	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
152031	chr22	19449151	19449500	+	0	NA	TTS (NM_001035247)	TTS (NM_001035247)	-1614	NM_173793	128977		NM_173793	ENSG00000242259	C22orf39	Pants	chromosome 22 open reading frame 39	protein-coding
90307	chr17	1087251	1087630	+	0	NA	intron (NM_001322840, intron 4 of 22).2	intron (NM_001322840, intron 4 of 22).2	-8447	NM_001282149	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
135766	chr2	169682871	169684350	+	0	NA	intron (NM_001085447, intron 1 of 8)	intron (NM_001085447, intron 1 of 8)	10795	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
177746	chr4	122539971	122541100	+	0	NA	Intergenic	Intergenic	-78448	NR_104126	100996941		NR_104126	ENSG00000227145	IL21-AS1	-	IL21 antisense RNA 1	ncRNA
182261	chr5	57193071	57194430	+	0	NA	intron (NM_001331037, intron 2 of 12)	intron (NM_001331037, intron 2 of 12)	18302	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
3003	chr1	12059751	12059850	+	0	NA	Intergenic	Intergenic	-3503	NM_001243	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
142030	chr20	1670851	1671150	+	0	NA	Intergenic	Intergenic	-13221	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
170462	chr3	185922271	185922500	+	0	NA	intron (NM_001243879, intron 3 of 7)	intron (NM_001243879, intron 3 of 7)	15629	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
60832	chr13	45414601	45414800	+	0	NA	intron (NM_001286807, intron 1 of 9)	intron (NM_001286807, intron 1 of 9)	-3462	NR_047031	100874259		NR_047031	ENSG00000251015	SLC25A30-AS1	-	SLC25A30 antisense RNA 1	ncRNA
39090	chr11	48010371	48010530	+	0	NA	intron (NM_002843, intron 1 of 24)	AluSz|SINE|Alu	29891	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
191071	chr6	3410921	3411180	+	0	NA	intron (NM_001286456, intron 2 of 3)	intron (NM_001286456, intron 2 of 3)	33963	NR_104448	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
165332	chr3	88033051	88033350	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	25796	NM_003663	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
103745	chr17	78903371	78903730	+	0	NA	promoter-TSS (NM_001243541)	promoter-TSS (NM_001243541)	-349	NM_001243541	100653515		NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
70723	chr14	103346601	103347600	+	0	NA	Intergenic	MER65-int|LTR|ERV1	9251	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
110296	chr19	1833371	1833800	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	11496	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
47151	chr12	762751	762850	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSp|SINE|Alu	9877	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
150216	chr21	39456571	39456750	+	0	NA	intron (NM_007341, intron 1 of 6)	intron (NM_007341, intron 1 of 6)	4690	NM_007341	6450		NM_007341	ENSG00000185437	SH3BGR	21-GARP	SH3 domain binding glutamate rich protein	protein-coding
102594	chr17	75900271	75900450	+	0	NA	intron (NM_032478, intron 6 of 8)	MIRc|SINE|MIR	-3409	NM_173547	201292		NM_173547	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
20932	chr1	202200651	202202030	+	0	NA	intron (NM_001017403, intron 1 of 17)	intron (NM_001017403, intron 1 of 17)	-2372	NM_021636	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
101467	chr17	67467501	67467700	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-3889	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
231469	chr9	131310501	131311450	+	0	NA	Intergenic	Intergenic	21252	NM_032728	84814		NM_032728	ENSG00000160539	PLPP7	C9orf67|NET39|PPAPDC3	phospholipid phosphatase 7 (inactive)	protein-coding
135798	chr2	169830301	169830500	+	0	NA	intron (NM_172070, intron 1 of 38)	L1MC5a|LINE|L1	2946	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
87634	chr16	74533151	74533450	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluY|SINE|Alu	73814	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
219163	chr8	66488551	66489330	+	0	NA	Intergenic	AluJb|SINE|Alu	-4626	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
94036	chr17	27299371	27300530	+	0	NA	intron (NM_134265, intron 1 of 6)	intron (NM_134265, intron 1 of 6)	5836	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
186485	chr5	138133071	138133730	+	0	NA	intron (NM_003551, intron 2 of 5)	AluY|SINE|Alu	6028	NM_003551	8382		NM_003551	ENSG00000112981	NME5	CILD48|NM23-H5|NM23H5|RSPH23	NME/NM23 family member 5	protein-coding
225132	chr9	33617521	33617930	+	0	NA	Intergenic	Intergenic	-6500	NR_003573	304		NR_003573		ANXA2P2	ANX2L2|ANX2P2|LPC2B	annexin A2 pseudogene 2	pseudo
47858	chr12	6629301	6629500	+	0	NA	intron (NM_020400, intron 1 of 1)	AluSc8|SINE|Alu	2249	NM_001142961	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
129440	chr2	69491871	69492700	+	0	NA	intron (NM_001371575, intron 17 of 20)	AluSx1|SINE|Alu	27886	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
67094	chr14	68275571	68275830	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	353087	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
186618	chr5	138534671	138535100	+	0	NA	intron (NM_001291975, intron 2 of 11)	MIRb|SINE|MIR	6826	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
156947	chr22	42340601	42340800	+	0	NA	Intergenic	MIRb|SINE|MIR	28508	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
166250	chr3	112304701	112304900	+	0	NA	intron (NR_147411, intron 1 of 4)	HERV3-int|LTR|ERV1	2322	NR_147411	105374042		NR_147411	ENSG00000239482	LOC105374042	-	uncharacterized LOC105374042	ncRNA
204093	chr7	2112071	2112780	+	0	NA	intron (NM_001304524, intron 9 of 16)	L1MC4a|LINE|L1	-23373	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
70881	chr14	103846771	103848930	+	0	NA	promoter-TSS (NM_015316)	intron (NR_038436, intron 1 of 2)	129	NR_038436	145216		NR_038436	ENSG00000258735	PPP1R13B-DT	HITT|LINC00637	PPP1R13B divergent transcript	ncRNA
216117	chr8	11287171	11287400	+	0	NA	intron (NM_015458, intron 1 of 9)	intron (NM_015458, intron 1 of 9)	2469	NM_015458	66036		NM_015458	ENSG00000104643	MTMR9	C8orf9|LIP-STYX|MTMR8	myotubularin related protein 9	protein-coding
205495	chr7	17937701	17938300	+	0	NA	intron (NM_015132, intron 1 of 25)	intron (NM_015132, intron 1 of 25)	2494	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
213179	chr7	132451101	132451950	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	124945	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
139385	chr2	221724601	221725000	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-150598	NM_001304536	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
222046	chr8	130248441	130249850	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	47388	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
233448	chr9	137627371	137627530	+	0	NA	intron (NM_001354612, intron 1 of 8)	AluSx|SINE|Alu	8445	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
142217	chr20	3069451	3069950	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-1920	NM_000915	5020		NM_000915	ENSG00000101405	OXT	OT|OT-NPI|OXT-NPI	oxytocin/neurophysin I prepropeptide	protein-coding
630	chr1	1333651	1334300	+	0	NA	exon (NM_152228, exon 6 of 6)	exon (NM_152228, exon 6 of 6)	2695	NM_152228	83756		NM_152228	ENSG00000169962	TAS1R3	T1R3	taste 1 receptor member 3	protein-coding
24032	chr1	235277871	235278300	+	0	NA	intron (NM_016374, intron 2 of 23)	ERVL-E-int|LTR|ERVL	-49131	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
90936	chr17	2614021	2614680	+	0	NA	intron (NM_000430, intron 1 of 10)	MER58B|DNA|hAT-Charlie	20696	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
207318	chr7	44036271	44036980	+	0	NA	intron (NR_024116, intron 5 of 8)	intron (NR_024116, intron 5 of 8)	-2424	NR_072982	255031		NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
86205	chr16	58001201	58003180	+	0	NA	intron (NM_001204911, intron 1 of 3)	MIRb|SINE|MIR	783	NM_001204911	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
190625	chr5	181194571	181195050	+	0	NA	3' UTR (NM_203296, exon 7 of 7)	3' UTR (NM_203296, exon 7 of 7)	-2902	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
77825	chr15	88632571	88633300	+	0	NA	TTS (NM_022767)	TTS (NM_022767)	-2697	NR_130134	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
132895	chr2	111373071	111373480	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	-52184	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
58345	chr12	131564251	131564350	+	0	NA	Intergenic	Intergenic	83821	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
50718	chr12	48959921	48960280	+	0	NA	Intergenic	AluJb|SINE|Alu	-2613	NM_001659	377		NM_001659	ENSG00000134287	ARF3	-	ADP ribosylation factor 3	protein-coding
167871	chr3	134492301	134492800	+	0	NA	intron (NM_001353112, intron 2 of 13)	intron (NM_001353112, intron 2 of 13)	6377	NM_001353125	80254		NM_025180	ENSG00000182923	CEP63	SCKL6	centrosomal protein 63	protein-coding
70188	chr14	100408201	100408980	+	0	NA	intron (NM_001350949, intron 2 of 6)	intron (NM_001350949, intron 2 of 6)	32105	NM_001350947	79446		NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
51016	chr12	49705521	49705880	+	0	NA	intron (NM_175736, intron 1 of 25)	intron (NM_175736, intron 1 of 25)	1705	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
54409	chr12	90090601	90090800	+	0	NA	Intergenic	AluJr|SINE|Alu	143007	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
9585	chr1	52032671	52034030	+	0	NA	non-coding (NR_046405, exon 3 of 3)	non-coding (NR_046405, exon 3 of 3)	460	NM_138417	112970		NM_138417	ENSG00000198841	KTI12	SBBI81|TOT4	KTI12 chromatin associated homolog	protein-coding
172579	chr4	2470851	2471580	+	0	NA	intron (NM_001185009, intron 2 of 8)	AluSz|SINE|Alu	1762	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
144513	chr20	35696651	35697050	+	0	NA	intron (NR_037570, intron 3 of 13)	AluSp|SINE|Alu	2502	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
19071	chr1	170071601	170072000	+	0	NA	intron (NM_001204514, intron 1 of 20)	MSTB2|LTR|ERVL-MaLR	-2885	NM_001204517	22920		NM_014970	ENSG00000075945	KIFAP3	FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1	kinesin associated protein 3	protein-coding
22710	chr1	224115951	224116780	+	0	NA	intron (NR_049764, intron 1 of 3)	intron (NR_049764, intron 1 of 3)	2254	NR_049764	23219		NM_015176	ENSG00000143756	FBXO28	CENP-30|DEE100|Fbx28	F-box protein 28	protein-coding
120487	chr19	44756071	44756650	+	0	NA	intron (NM_005178, intron 3 of 8)	MSR1|Satellite|Satellite	-2297	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
83632	chr16	28287971	28288780	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-4150	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
86929	chr16	68093821	68094580	+	0	NA	intron (NM_173165, intron 1 of 9)	intron (NM_173165, intron 1 of 9)	8830	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
16974	chr1	155960971	155961580	+	0	NA	intron (NM_004723, intron 11 of 21)	AluYm1|SINE|Alu	-9939	NR_106796	102465442		NR_106796	ENSG00000277817	MIR6738	hsa-mir-6738	microRNA 6738	ncRNA
40997	chr11	65403701	65404230	+	0	NA	intron (NM_001300832, intron 8 of 9)	intron (NM_001300832, intron 8 of 9)	17328	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
116662	chr19	18375471	18375830	+	0	NA	Intergenic	Intergenic	-10508	NM_004864	9518		NM_004864	ENSG00000130513	GDF15	GDF-15|HG|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB	growth differentiation factor 15	protein-coding
197638	chr6	83803151	83803430	+	0	NA	Intergenic	L1PA2|LINE|L1	-49976	NM_001009994	134701		NM_001009994	ENSG00000203877	RIPPLY2	C6orf159|SCDO6|dJ237I15.1	ripply transcriptional repressor 2	protein-coding
4041	chr1	18953801	18954450	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	2551	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
229081	chr9	114360701	114361150	+	0	NA	intron (NM_001317952, intron 8 of 20)	intron (NM_001317952, intron 8 of 20)	27057	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
209557	chr7	77331171	77331350	+	0	NA	intron (NM_001350897, intron 18 of 29)	AluYc|SINE|Alu	-83938	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
139559	chr2	224927001	224928830	+	0	NA	intron (NM_001363762, intron 2 of 55)	intron (NM_001363762, intron 2 of 55)	19134	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
93685	chr17	19361301	19361630	+	0	NA	intron (NM_001368769, intron 1 of 6)	intron (NM_001368769, intron 1 of 6)	1258	NM_001321219	27077		NM_015681	ENSG00000108641	B9D1	B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1	B9 domain containing 1	protein-coding
3389	chr1	15732671	15733030	+	0	NA	intron (NM_015164, intron 19 of 19)	intron (NM_015164, intron 19 of 19)	-3408	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
92510	chr17	8892201	8892850	+	0	NA	intron (NM_001142633, intron 6 of 18)	MIR|SINE|MIR	19992	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
27667	chr10	33053051	33053350	+	0	NA	Intergenic	Intergenic	63607	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
63092	chr13	113216001	113216200	+	0	NA	intron (NM_003589, intron 2 of 19)	intron (NM_003589, intron 2 of 19)	6487	NM_001008895	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
133208	chr2	113165071	113165430	+	0	NA	Intergenic	Intergenic	-8721	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
181857	chr5	53253451	53253800	+	0	NA	Intergenic	Intergenic	143783	NR_104654	257396		NR_034107	ENSG00000247796	MOCS2-DT	-	MOCS2 divergent transcript	ncRNA
155843	chr22	39448371	39448530	+	0	NA	Intergenic	Intergenic	-8562	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
210450	chr7	100116571	100117130	+	0	NA	intron (NM_001190415, intron 1 of 14)	L2a|LINE|L2	2507	NM_001364999	6878		NM_005641	ENSG00000106290	TAF6	ALYUS|MGC:8964|TAF(II)70|TAF(II)80|TAF2E|TAFII-70|TAFII-80|TAFII70|TAFII80|TAFII85	TATA-box binding protein associated factor 6	protein-coding
183666	chr5	80409771	80410330	+	0	NA	intron (NM_014733, intron 1 of 17)	intron (NM_014733, intron 1 of 17)	1986	NM_001105251	9765		NM_014733	ENSG00000039319	ZFYVE16	PPP1R69	zinc finger FYVE-type containing 16	protein-coding
76480	chr15	74871971	74874230	+	0	NA	intron (NM_001320778, intron 1 of 9)	CpG	265	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
8923	chr1	43994751	43995230	+	0	NA	intron (NM_152499, intron 5 of 8)	intron (NM_152499, intron 5 of 8)	3143	NM_001349128	149473		NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding
229200	chr9	114717171	114717530	+	0	NA	Intergenic	Intergenic	-35158	NM_001371884	100505478		NM_001199233	ENSG00000230601	TEX48	-	testis expressed 48	protein-coding
124642	chr2	1848751	1848850	+	0	NA	intron (NM_001329845, intron 19 of 24)	intron (NM_001329845, intron 19 of 24)	-104285	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
27378	chr10	30929301	30930230	+	0	NA	intron (NM_001143771, intron 2 of 7)	LTR12C|LTR|ERV1	69752	NM_001143769	220929		NM_182755	ENSG00000183621	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
50386	chr12	47253671	47253830	+	0	NA	Intergenic	L1PB1|LINE|L1	-37307	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
185141	chr5	119313271	119313850	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	-19615	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
75515	chr15	66490321	66490580	+	0	NA	non-coding (NR_138061, exon 4 of 4)	non-coding (NR_138061, exon 4 of 4)	6584	NR_039737	100616149		NR_039737	ENSG00000266589	MIR4512	-	microRNA 4512	ncRNA
118740	chr19	38314301	38314500	+	0	NA	intron (NM_001145463, intron 1 of 8)	AluSx4|SINE|Alu	1380	NM_001145461	90522		NM_033557	ENSG00000167645	YIF1B	FinGER8|KABAMAS	Yip1 interacting factor homolog B, membrane trafficking protein	protein-coding
204377	chr7	2979401	2979600	+	0	NA	intron (NM_032415, intron 1 of 24)	intron (NM_032415, intron 1 of 24)	64367	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
134379	chr2	136310871	136311350	+	0	NA	Intergenic	Intergenic	-192961	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
32315	chr10	102166701	102166900	+	0	NA	Intergenic	AluJb|SINE|Alu	14411	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
44097	chr11	95792221	95792480	+	0	NA	intron (NM_014679, intron 1 of 10)	intron (NM_014679, intron 1 of 10)	1852	NM_014679	9702		NM_014679	ENSG00000166037	CEP57	MVA2|PIG8|TSP57	centrosomal protein 57	protein-coding
88942	chr16	87837771	87838180	+	0	NA	intron (NM_003486, intron 6 of 9)	intron (NM_003486, intron 6 of 9)	-3315	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
62077	chr13	94362421	94362700	+	0	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	117122	NM_001922	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
72273	chr15	30799521	30799780	+	0	NA	Intergenic	Intergenic	-18386	NR_072991	390561		NR_072991		HERC2P10	-	HERC2 pseudogene 10	pseudo
80290	chr16	2254551	2254850	+	0	NA	intron (NM_001286627, intron 5 of 5)	AluSc|SINE|Alu	-3113	NM_001919	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
77070	chr15	78895221	78895480	+	0	NA	intron (NM_206839, intron 12 of 12)	intron (NM_206839, intron 12 of 12)	22361	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
195852	chr6	41456271	41456430	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-46094	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
213222	chr7	133365001	133365560	+	0	NA	intron (NM_021807, intron 6 of 17)	intron (NM_021807, intron 6 of 17)	74399	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
106981	chr18	32023201	32023800	+	0	NA	intron (NM_017831, intron 1 of 5)	LTR49-int|LTR|ERV1	4675	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
200879	chr6	138954701	138954900	+	0	NA	intron (NM_031922, intron 1 of 19)	intron (NM_031922, intron 1 of 19)	33453	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
21110	chr1	203606201	203606400	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-20487	NM_001001396	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
130877	chr2	87412871	87413030	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-42477	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
179306	chr4	177392151	177392450	+	0	NA	Intergenic	Intergenic	50137	NM_000027	175		NM_000027	ENSG00000038002	AGA	AGU|ASRG|GA	aspartylglucosaminidase	protein-coding
199735	chr6	125773501	125773900	+	0	NA	Intergenic	L1ME3E|LINE|L1	-7415	NM_001199619	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
72086	chr15	28912371	28912730	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	-9087	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
38154	chr11	35619851	35619950	+	0	NA	exon (NM_014344, exon 1 of 1)	exon (NM_014344, exon 1 of 1)	1440	NM_014344	24147		NM_014344	ENSG00000179431	FJX1	-	four-jointed box kinase 1	protein-coding
80265	chr16	2228071	2228430	+	0	NA	intron (NM_004424, intron 1 of 13)	intron (NM_004424, intron 1 of 13)	4659	NM_004424	1877		NM_004424	ENSG00000167967	E4F1	E4F	E4F transcription factor 1	protein-coding
56271	chr12	112087051	112087350	+	0	NA	intron (NM_024953, intron 4 of 23)	A-rich|Low_complexity|Low_complexity	21583	NM_024953	80018		NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N-alpha-acetyltransferase 25, NatB auxiliary subunit	protein-coding
96678	chr17	41100251	41100350	+	0	NA	intron (NM_001277332, intron 3 of 5)	intron (NM_001277332, intron 3 of 5)	-2158	NM_031960	728224		NM_031960	ENSG00000204880	KRTAP4-8	KAP4.8|KRTAP4.8	keratin associated protein 4-8	protein-coding
213197	chr7	132560921	132561400	+	0	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	15310	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
45469	chr11	118569851	118570350	+	0	NA	Intergenic	AluSc|SINE|Alu	-2287	NM_001142281	372		NM_001655	ENSG00000095139	ARCN1	COPD|SRMMD|SSMG	archain 1	protein-coding
41461	chr11	66116671	66117200	+	0	NA	intron (NM_018026, intron 1 of 23)	L2a|LINE|L2	46663	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
221508	chr8	124604701	124605930	+	0	NA	intron (NM_001363300, intron 3 of 12)	MamRep605|LTR?|LTR?	66192	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
135475	chr2	161414251	161415600	+	0	NA	Intergenic	Intergenic	-1372	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
134073	chr2	131515301	131516180	+	0	NA	non-coding (NR_026922, exon 11 of 18)	non-coding (NR_026922, exon 11 of 18)	-11935	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
122788	chr19	50328001	50328230	+	0	NA	intron (NM_001372305, intron 1 of 4)	intron (NM_001372305, intron 1 of 4)	956	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
114021	chr19	10915201	10915600	+	0	NA	intron (NM_001370089, intron 6 of 14)	intron (NM_001370089, intron 6 of 14)	13239	NM_024029	78992		NM_024029	ENSG00000130733	YIPF2	FinGER2|YIPFbeta3B|Yip5C	Yip1 domain family member 2	protein-coding
2325	chr1	9142221	9143030	+	0	NA	Intergenic	AluSz|SINE|Alu	9152	NR_029610	407040		NR_029610	ENSG00000284357	MIR34A	MIRN34A|miRNA34A|mir-34|mir-34a	microRNA 34a	ncRNA
35174	chr11	778871	779030	+	0	NA	intron (NR_126342, intron 2 of 3)	intron (NR_126342, intron 2 of 3)	1372	NR_126342	171391		NM_138291	ENSG00000255284	GATD1-DT	NS3BP	GATD1 divergent transcript	ncRNA
204520	chr7	4797021	4797530	+	0	NA	3' UTR (NM_018059, exon 15 of 15)	3' UTR (NM_018059, exon 15 of 15)	-8636	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
53310	chr12	64583871	64584550	+	0	NA	Intergenic	Intergenic	-26285	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
66045	chr14	58316921	58317480	+	0	NA	intron (NM_023000, intron 5 of 23)	AluY|SINE|Alu	18645	NM_002892	5926		NM_002892	ENSG00000032219	ARID4A	RBBP-1|RBBP1|RBP-1|RBP1	AT-rich interaction domain 4A	protein-coding
199869	chr6	127806621	127807080	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	48338	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
12242	chr1	100430071	100430430	+	0	NA	intron (NM_001319210, intron 5 of 16)	intron (NM_001319210, intron 5 of 16)	77744	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
99656	chr17	50706521	50708700	+	0	NA	exon (NM_052855, exon 1 of 5)	exon (NM_052855, exon 1 of 5)	304	NM_052855	91369		NM_052855	ENSG00000154945	ANKRD40	-	ankyrin repeat domain 40	protein-coding
67102	chr14	68359221	68359680	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	269337	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
174293	chr4	38448401	38448600	+	0	NA	intron (NR_110951, intron 6 of 7)	L1PA4|LINE|L1	-61267	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
127976	chr2	46776851	46777030	+	0	NA	Intergenic	Charlie1|DNA|hAT-Charlie	-39728	NR_034099	388948		NR_034099	ENSG00000222005	LINC01118	-	long intergenic non-protein coding RNA 1118	ncRNA
202340	chr6	157548851	157548950	+	0	NA	intron (NM_024630, intron 2 of 8)	intron (NM_024630, intron 2 of 8)	19768	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
41800	chr11	66867121	66867780	+	0	NA	intron (NM_022172, intron 8 of 20)	intron (NM_022172, intron 8 of 20)	10386	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
171464	chr3	196374751	196375230	+	0	NA	intron (NM_015562, intron 5 of 10)	G-rich|Low_complexity|Low_complexity	-36570	NR_037950	100534611		NR_037950		TM4SF19-DYNLT2B	TM4SF19-TCTEX1D2	TM4SF19-DYNLT2B readthrough (NMD candidate)	ncRNA
36597	chr11	6733101	6734480	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-11911	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
202875	chr6	159967221	159967750	+	0	NA	Intergenic	L1MC4|LINE|L1	-1597	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
225513	chr9	35698251	35698550	+	0	NA	exon (NM_006289, exon 55 of 57)	exon (NM_006289, exon 55 of 57)	-8344	NM_001301227	7169		NM_003289	ENSG00000198467	TPM2	AMCD1|CMYP23|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB	tropomyosin 2	protein-coding
172597	chr4	2484721	2485600	+	0	NA	intron (NM_001185009, intron 2 of 8)	intron (NM_001185009, intron 2 of 8)	15707	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
47912	chr12	6764051	6764830	+	0	NA	Intergenic	Intergenic	-1923	NM_002824	5763		NM_002824	ENSG00000159335	PTMS	ParaT	parathymosin	protein-coding
232574	chr9	136372351	136373180	+	0	NA	intron (NM_052813, intron 1 of 12)	intron (NM_052813, intron 1 of 12)	904	NM_052814	64170		NM_022352	ENSG00000187796	CARD9	CANDF2|IMD103|hCARD9	caspase recruitment domain family member 9	protein-coding
137726	chr2	197729271	197729430	+	0	NA	intron (NM_001284362, intron 10 of 10)	L1PA4|LINE|L1	23981	NM_138395	92935		NM_138395	ENSG00000247626	MARS2	COXPD25|MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
142854	chr20	17616501	17616800	+	0	NA	intron (NM_004587, intron 21 of 24)	intron (NM_004587, intron 21 of 24)	46575	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
193873	chr6	31576351	31576450	+	0	NA	intron (NM_000594, intron 1 of 3).6	intron (NM_000594, intron 1 of 3).6	835	NM_000594	7124		NM_000594	ENSG00000232810	TNF	DIF|TNF-alpha|TNFA|TNFSF2|TNLG1F	tumor necrosis factor	protein-coding
148985	chr21	14031121	14031200	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-50716	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
5286	chr1	25103801	25104000	+	0	NA	Intergenic	Intergenic	80397	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
16627	chr1	155090321	155090580	+	0	NA	Intergenic	AluSp|SINE|Alu	11613	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
235251	chrX	41560701	41561330	+	0	NA	intron (NM_001126055, intron 16 of 24)	intron (NM_001126055, intron 16 of 24)	113555	NM_022567	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
172411	chr4	1801001	1801400	+	0	NA	intron (NM_022965, intron 4 of 15)	intron (NM_022965, intron 4 of 15)	7888	NM_001163213	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
29652	chr10	71878651	71878950	+	0	NA	Intergenic	Intergenic	-27549	NM_001042466	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
205778	chr7	23544221	23544550	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12344	NM_001282757	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
194926	chr6	34986771	34987080	+	0	NA	intron (NM_015245, intron 8 of 23)	intron (NM_015245, intron 8 of 23)	97670	NM_015245	23294		NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
79768	chr16	1365871	1366350	+	0	NA	non-coding (NR_160279, exon 6 of 7)	non-coding (NR_160279, exon 6 of 7)	13542	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
23023	chr1	226403351	226403830	+	0	NA	intron (NM_001618, intron 1 of 22)	intron (NM_001618, intron 1 of 22)	4503	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
123125	chr19	51887601	51888130	+	0	NA	promoter-TSS (NM_001370448)	promoter-TSS (NM_001370448)	71	NM_001135590	84765		NM_032679	ENSG00000161551	ZNF577	-	zinc finger protein 577	protein-coding
135562	chr2	165401271	165401530	+	0	NA	Intergenic	L1MB5|LINE|L1	-68298	NM_001172173	80034		NM_024969	ENSG00000178662	CSRNP3	FAM130A2|MBU1|PPP1R73|TAIP-2|TAIP2	cysteine and serine rich nuclear protein 3	protein-coding
177542	chr4	118890071	118890630	+	0	NA	intron (NM_133477, intron 1 of 4)	MIR3|SINE|MIR	1496	NM_133477	171024		NM_133477	ENSG00000172403	SYNPO2	SYISL	synaptopodin 2	protein-coding
196884	chr6	52227471	52227730	+	0	NA	Intergenic	Intergenic	16900	NM_052872	112744		NM_052872	ENSG00000112116	IL17F	CANDF6|IL-17F|IL17A|ML-1|ML1	interleukin 17F	protein-coding
141915	chr20	1108351	1108830	+	0	NA	Intergenic	Intergenic	-4639	NM_178578	9491		NM_006814	ENSG00000125818	PSMF1	PI31	proteasome inhibitor subunit 1	protein-coding
125885	chr2	24651651	24652150	+	0	NA	intron (NM_147233, intron 2 of 20)	L1MB7|LINE|L1	67423	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
180212	chr5	1512721	1513180	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	-2094	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
44129	chr11	96105351	96106630	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-181883	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
79539	chr16	878471	878800	+	0	NA	intron (NM_001352017, intron 7 of 11)	intron (NM_001352017, intron 7 of 11)	-42398	NR_110946	101929387		NR_110945	ENSG00000260439	LMF1-AS1	LA16c-366D3.1	LMF1 antisense RNA 1	ncRNA
28600	chr10	56321771	56321930	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	39409	NM_007057	11130		NM_007057	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|SIP30|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
113947	chr19	10756521	10756930	+	0	NA	intron (NM_001005362, intron 1 of 19)	intron (NM_001005362, intron 1 of 19)	-23529	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
180983	chr5	35794601	35795000	+	0	NA	intron (NM_024867, intron 32 of 36)	intron (NM_024867, intron 32 of 36)	-62091	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
183698	chr5	80852221	80852480	+	0	NA	intron (NM_002439, intron 20 of 23)	intron (NM_002439, intron 20 of 23)	-108013	NM_006909	5924		NM_006909	ENSG00000113319	RASGRF2	GRF2|RAS-GRF2	Ras protein specific guanine nucleotide releasing factor 2	protein-coding
96367	chr17	40095371	40097230	+	0	NA	intron (NM_021724, intron 4 of 7)	intron (NM_021724, intron 4 of 7)	4289	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
144132	chr20	34011721	34012180	+	0	NA	intron (NM_016732, intron 1 of 9)	AluSz|SINE|Alu	-17583	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
181678	chr5	50444901	50446250	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-4287	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
188475	chr5	154760051	154760500	+	0	NA	intron (NM_001367719, intron 1 of 18)	MIR3|SINE|MIR	3121	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
96169	chr17	39708071	39708430	+	0	NA	intron (NR_110535, intron 2 of 26)	intron (NR_110535, intron 2 of 26)	8186	NM_004448	2064		NM_004448	ENSG00000141736	ERBB2	CD340|HER-2|HER-2/neu|HER2|MLN 19|MLN-19|NEU|NGL|TKR1|VSCN2|c-ERB-2|c-ERB2|p185(erbB2)	erb-b2 receptor tyrosine kinase 2	protein-coding
172742	chr4	2834801	2836230	+	0	NA	3' UTR (NM_003023, exon 13 of 13)	3' UTR (NM_003023, exon 13 of 13)	-8329	NM_001354759	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
77463	chr15	84431321	84431700	+	0	NA	exon (NM_001267536, exon 10 of 11)	exon (NM_001267536, exon 10 of 11)	8892	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
200846	chr6	138402271	138402600	+	0	NA	Intergenic	Intergenic	-1096	NM_001326380	23593		NM_014320	ENSG00000051620	HEBP2	C6ORF34B|C6orf34|PP23|SOUL	heme binding protein 2	protein-coding
189643	chr5	176113601	176114200	+	0	NA	intron (NR_169299, intron 19 of 26)	G-rich|Low_complexity|Low_complexity	-5649	NR_038402	202134		NM_001079529		FAM153B	-	protein FAM153B	pseudo
37030	chr11	12124721	12124980	+	0	NA	intron (NM_001346293, intron 2 of 26)	L3|LINE|CR1	-13540	NM_001282664	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
237774	chrX	129771171	129771930	+	0	NA	Intergenic	MIR3|SINE|MIR	-8399	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
44327	chr11	102405071	102405230	+	0	NA	intron (NM_052932, intron 2 of 4)	AluY|SINE|Alu	47615	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
76266	chr15	74072701	74073350	+	0	NA	intron (NM_001038640, intron 12 of 17)	intron (NM_001038640, intron 12 of 17)	9525	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
132526	chr2	106143421	106143930	+	0	NA	intron (NR_165308, intron 6 of 14)	MLT1E2|LTR|ERVL-MaLR	-4794	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
175319	chr4	68328871	68329100	+	0	NA	intron (NM_001031732, intron 9 of 16)	Tigger3a|DNA|TcMar-Tigger	21105	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
210922	chr7	101227801	101228200	+	0	NA	Intergenic	AluY|SINE|Alu	9802	NM_014343	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
134346	chr2	136122951	136123050	+	0	NA	Intergenic	Intergenic	-4851	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
103469	chr17	78341571	78342400	+	0	NA	Intergenic	CpG	17682	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
91975	chr17	7412471	7412630	+	0	NA	intron (NM_020795, intron 2 of 6)	intron (NM_020795, intron 2 of 6)	4705	NM_020795	57555		NM_020795	ENSG00000169992	NLGN2	-	neuroligin 2	protein-coding
32233	chr10	101829101	101830000	+	0	NA	TTS (NR_045118)	TTS (NR_045118)	10321	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
233467	chr9	137717601	137718380	+	0	NA	intron (NM_024757, intron 3 of 26)	CpG	70416	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
229814	chr9	125645051	125645350	+	0	NA	intron (NM_024117, intron 4 of 10)	intron (NM_024117, intron 4 of 10)	62008	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
31205	chr10	91244901	91245300	+	0	NA	intron (NM_032373, intron 3 of 9)	L2-1_AMi|LINE|L2	24437	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
165717	chr3	102415321	102415700	+	0	NA	Intergenic	Intergenic	-19505	NM_001329788	131368		NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida like domain containing 1	protein-coding
140473	chr2	233179651	233180780	+	0	NA	intron (NM_001017915, intron 18 of 26).2	MLT1H2|LTR|ERVL-MaLR	-71356	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
231745	chr9	132126171	132126600	+	0	NA	Intergenic	Intergenic	-35673	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
47657	chr12	6316471	6317250	+	0	NA	intron (NM_001384598, intron 7 of 15)	intron (NM_001384598, intron 7 of 15)	3727	NM_001144857	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
191893	chr6	15346251	15347300	+	0	NA	intron (NM_001267040, intron 1 of 17)	AluSg|SINE|Alu	97920	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
4113	chr1	19316771	19316930	+	0	NA	intron (NM_001040126, intron 2 of 7)	(TTCT)n|Simple_repeat|Simple_repeat	4524	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
237673	chrX	124344371	124345050	+	0	NA	Intergenic	Intergenic	-1572	NM_001114937	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
165689	chr3	101935051	101935780	+	0	NA	Intergenic	Intergenic	-5444	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
179581	chr4	185265751	185266380	+	0	NA	intron (NM_001378032, intron 4 of 19)	intron (NM_001378032, intron 4 of 19)	56508	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
189744	chr5	176595551	176595850	+	0	NA	TTS (NM_001171976)	TTS (NM_001171976)	14456	NM_052899	114787		NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
156968	chr22	42437271	42438630	+	0	NA	promoter-TSS (NM_001371362)	promoter-TSS (NM_001371362)	36	NM_001371362	150372		NM_145912	ENSG00000235568	NFAM1	CNAIP	NFAT activating protein with ITAM motif 1	protein-coding
20430	chr1	198283201	198283400	+	0	NA	intron (NM_133494, intron 7 of 9)	intron (NM_133494, intron 7 of 9)	126302	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
2377	chr1	9414471	9414630	+	0	NA	Intergenic	AluSx|SINE|Alu	14366	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
127588	chr2	42807851	42807950	+	0	NA	Intergenic	AluSx|SINE|Alu	-15317	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
15686	chr1	150972051	150972650	+	0	NA	intron (NM_181746, intron 1 of 10)	intron (NM_181746, intron 1 of 10)	2485	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
97839	chr17	44947151	44948730	+	0	NA	promoter-TSS (NM_001265577)	promoter-TSS (NM_001265577)	-167	NM_001265577	146909		NM_001080443	ENSG00000186185	KIF18B	-	kinesin family member 18B	protein-coding
2949	chr1	11904401	11904730	+	0	NA	Intergenic	AluSc5|SINE|Alu	-3589	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
130658	chr2	86194751	86196250	+	0	NA	promoter-TSS (NM_006839)	promoter-TSS (NM_006839)	-38	NM_006839	10989		NM_006839	ENSG00000132305	IMMT	HMP|MICOS60|MINOS2|Mic60|P87|P87/89|P89|PIG4|PIG52	inner membrane mitochondrial protein	protein-coding
188562	chr5	157029551	157029880	+	0	NA	exon (NM_001308156, exon 8 of 8)	exon (NM_001308156, exon 8 of 8)	28526	NM_012206	26762		NM_012206	ENSG00000113249	HAVCR1	CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
29917	chr10	73246571	73248000	+	0	NA	promoter-TSS (NR_038373)	promoter-TSS (NR_038373)	-30	NM_015190	23234		NM_015190	ENSG00000213551	DNAJC9	HDJC9|JDD1|SB73	DnaJ heat shock protein family (Hsp40) member C9	protein-coding
52438	chr12	55899021	55899280	+	0	NA	Intergenic	L2b|LINE|L2	27975	NM_001143853	84305		NM_032345	ENSG00000170473	PYM1	PYM|WIBG	PYM homolog 1, exon junction complex associated factor	protein-coding
217621	chr8	30028351	30029050	+	0	NA	Intergenic	Intergenic	54364	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
28479	chr10	49541851	49542350	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-2562	NM_001277059	2074		NM_000124	ENSG00000225830	ERCC6	ARMD5|CKN2|COFS|COFS1|CSB|CSB-PGBD3|POF11|RAD26|UVSS1	ERCC excision repair 6, chromatin remodeling factor	protein-coding
165560	chr3	101512221	101514050	+	0	NA	promoter-TSS (NM_020654)	promoter-TSS (NM_020654)	77	NM_001282802	57337		NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
108645	chr18	76518401	76519000	+	0	NA	Intergenic	Intergenic	-9955	NR_015417	284276		NR_015417	ENSG00000266256	LINC00908	ASRPS	long intergenic non-protein coding RNA 908	ncRNA
224118	chr9	4663151	4664100	+	0	NA	3' UTR (NM_203453, exon 1 of 1)	3' UTR (NM_203453, exon 1 of 1)	1331	NM_203453	403313		NM_203453	ENSG00000205808	PLPP6	LPRP-B|PA-PSP|PDP1|PPAPDC2|PSDP|bA6J24.6	phospholipid phosphatase 6	protein-coding
177797	chr4	123395351	123395800	+	0	NA	Intergenic	Intergenic	-1220	NM_001258038	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
101448	chr17	67445571	67445930	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-25739	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
51193	chr12	50404121	50404930	+	0	NA	intron (NM_001352306, intron 2 of 15)	AluJb|SINE|Alu	3118	NM_001352314	113251		NM_052879	ENSG00000161813	LARP4	PP13296	La ribonucleoprotein 4	protein-coding
13080	chr1	111514521	111514800	+	0	NA	intron (NM_001081976, intron 1 of 5)	(AC)n|Simple_repeat|Simple_repeat	-11027	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
211177	chr7	102589701	102590400	+	0	NA	intron (NM_001079877, intron 16 of 19)	intron (NM_001079877, intron 16 of 19)	-17429	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
126131	chr2	26087901	26088530	+	0	NA	intron (NM_016131, intron 1 of 5)	intron (NM_016131, intron 1 of 5)	54131	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
130908	chr2	87464021	87464900	+	0	NA	intron (NR_024206, intron 1 of 1)	MIR|SINE|MIR	-5490	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
167399	chr3	128970101	128970780	+	0	NA	TTS (NM_001348523)	TTS (NM_001348523)	21457	NM_001348523	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
87018	chr16	68259601	68260000	+	0	NA	3' UTR (NM_012320, exon 6 of 6)	3' UTR (NM_012320, exon 6 of 6)	-4726	NM_003983	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
110029	chr19	1453701	1454480	+	0	NA	intron (NM_005883, intron 4 of 14)	intron (NM_005883, intron 4 of 14)	1106	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
195780	chr6	40550371	40550530	+	0	NA	intron (NM_020737, intron 1 of 2)	MLT1K-int|LTR|ERVL-MaLR	36914	NM_020737	57497		NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
63322	chr13	114007021	114007750	+	0	NA	intron (NM_001320822, intron 18 of 23).2	intron (NM_001320822, intron 18 of 23).2	-33309	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
109473	chr19	805921	806480	+	0	NA	intron (NM_031990, intron 9 of 14)	CpG	1260	NR_039900	100616459		NR_039900	ENSG00000284361	MIR4745	mir-4745	microRNA 4745	ncRNA
227924	chr9	94258851	94260280	+	0	NA	promoter-TSS (NR_160773)	promoter-TSS (NR_160773)	-254	NR_160773	158257		NR_046163	ENSG00000230262	LINC02603	MIRLET7DHG	long intergenic non-protein coding RNA 2603	ncRNA
156996	chr22	42508101	42509400	+	0	NA	3' UTR (NM_015703, exon 7 of 7)	3' UTR (NM_015703, exon 7 of 7)	8171	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
204871	chr7	5858221	5858980	+	0	NA	Intergenic	AluSq4|SINE|Alu	-22198	NM_001097622	654231		NM_001097622	ENSG00000122543	OCM	OCM1|OM|ONCM	oncomodulin	protein-coding
116916	chr19	18791221	18792080	+	0	NA	promoter-TSS (NM_000095)	promoter-TSS (NM_000095)	-345	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
122294	chr19	49101151	49101650	+	0	NA	exon (NM_001301069, exon 7 of 10)	exon (NM_001301069, exon 7 of 10)	-12970	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
227042	chr9	83968451	83968550	+	0	NA	3' UTR (NM_001318188, exon 17 of 17)	3' UTR (NM_001318188, exon 17 of 17)	1357	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
72753	chr15	39625971	39626130	+	0	NA	intron (NM_001324338, intron 10 of 11)	intron (NM_001324338, intron 10 of 11)	44971	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
25459	chr10	6625421	6625680	+	0	NA	intron (NR_120634, intron 4 of 5)	MER90a|LTR|ERV1	6834	NR_120634	101928150		NR_120634		LINC02648	-	long intergenic non-protein coding RNA 2648	ncRNA
21451	chr1	205484451	205484750	+	0	NA	Intergenic	Intergenic	-20069	NM_002596	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
186274	chr5	134538001	134538400	+	0	NA	intron (NM_001289985, intron 3 of 11)	L2a|LINE|L2	12092	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
29725	chr10	72085101	72085380	+	0	NA	TTS (NM_001134434)	TTS (NM_001134434)	3311	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
23393	chr1	228208971	228209130	+	0	NA	intron (NM_052843, intron 1 of 80)	intron (NM_052843, intron 1 of 80)	920	NM_001098623	84033		NM_052843	ENSG00000154358	OBSCN	ARHGEF30|RHABDO1|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding
39579	chr11	61162501	61162850	+	0	NA	Intergenic	LTR45B|LTR|ERV1	-1249	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
233838	chrX	1498771	1500100	+	0	NA	intron (NM_178129, intron 1 of 1)	AluSq2|SINE|Alu	37750	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
4326	chr1	20487721	20487980	+	0	NA	Intergenic	MIR3|SINE|MIR	-1640	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
48048	chr12	6973021	6973480	+	0	NA	intron (NM_001320049, intron 1 of 4)	AluSz|SINE|Alu	2337	NM_001320049	10436		NM_006331	ENSG00000126749	EMG1	C2F|Grcc2f|NEP1	EMG1 N1-specific pseudouridine methyltransferase	protein-coding
3859	chr1	16953721	16954200	+	0	NA	intron (NM_014675, intron 21 of 36)	MIRb|SINE|MIR	26660	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
110323	chr19	1859871	1860850	+	0	NA	intron (NM_031918, intron 1 of 1)	intron (NM_031918, intron 1 of 1)	3219	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
159544	chr3	14570021	14570370	+	0	NA	Intergenic	LTR85a|LTR|Gypsy?	-29853	NM_001080423	80852		NM_001080423	ENSG00000144596	GRIP2	-	glutamate receptor interacting protein 2	protein-coding
56751	chr12	120146851	120147150	+	0	NA	intron (NM_006836, intron 38 of 57)	intron (NM_006836, intron 38 of 57)	8499	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
42185	chr11	67981771	67982130	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	22147	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
183912	chr5	87390901	87391250	+	0	NA	non-coding (NR_157071, exon 8 of 8)	non-coding (NR_157071, exon 8 of 8)	21829	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
11718	chr1	91875921	91876750	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	9816	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
167093	chr3	127563801	127564000	+	0	NA	Intergenic	(CAC)n|Simple_repeat|Simple_repeat	11431	NR_106883	102466199		NR_106883	ENSG00000275067	MIR6825	hsa-mir-6825	microRNA 6825	ncRNA
10016	chr1	55216851	55217050	+	0	NA	promoter-TSS (NR_146283)	promoter-TSS (NR_146283)	-911	NR_146283	109729135		NR_146283	ENSG00000231090	MIR4422HG	-	MIR4422 host gene	ncRNA
227199	chr9	88007051	88007500	+	0	NA	Intergenic	Intergenic	-32495	NM_012119	23552		NM_012119	ENSG00000156345	CDK20	CCRK|CDCH|P42|PNQALRE	cyclin dependent kinase 20	protein-coding
164318	chr3	57754501	57754700	+	0	NA	Intergenic	L2a|LINE|L2	-1709	NM_001377549	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
238991	chrX	155966921	155967200	+	0	NA	Intergenic	Intergenic	-30636	NM_176786	3581		NM_002186	ENSG00000124334	IL9R	CD129|IL-9R	interleukin 9 receptor	protein-coding
144964	chr20	37188501	37188700	+	0	NA	intron (NM_001324306, intron 2 of 15)	intron (NM_001324306, intron 2 of 15)	-9052	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
158762	chr3	9392551	9393000	+	0	NA	intron (NR_027007, intron 1 of 2)	intron (NR_027007, intron 1 of 2)	3848	NR_132781	440944		NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
69817	chr14	99215471	99215650	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	56637	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
183283	chr5	76528751	76529050	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-18509	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
148492	chr20	64064421	64064800	+	0	NA	intron (NM_003195, intron 1 of 9)	intron (NM_003195, intron 1 of 9)	1412	NM_003195	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
110247	chr19	1783151	1783450	+	0	NA	intron (NR_047593, intron 28 of 28)	intron (NR_047593, intron 28 of 28)	28976	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
112025	chr19	5074871	5075030	+	0	NA	intron (NM_001370093, intron 7 of 11)	intron (NM_001370093, intron 7 of 11)	105837	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
130371	chr2	85285271	85285830	+	0	NA	intron (NM_031283, intron 4 of 11)	intron (NM_031283, intron 4 of 11)	42439	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
146641	chr20	50310721	50310980	+	0	NA	non-coding (NR_109950, exon 3 of 3)	non-coding (NR_109950, exon 3 of 3)	10492	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
138141	chr2	202309101	202309500	+	0	NA	Intergenic	AluJr|SINE|Alu	16249	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
6314	chr1	27638171	27638530	+	0	NA	Intergenic	L2c|LINE|L2	-3165	NM_005248	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
1862	chr1	6403971	6404130	+	0	NA	Intergenic	AluJb|SINE|Alu	-10283	NM_007274	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
69034	chr14	91832971	91833330	+	0	NA	intron (NM_001128596, intron 1 of 11)	L1ME3E|LINE|L1	3305	NM_152332	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
196011	chr6	42014071	42014900	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	34409	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
145220	chr20	38912451	38912750	+	0	NA	intron (NM_001172735, intron 9 of 9)	AluJo|SINE|Alu	-13817	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
174688	chr4	41992021	41992330	+	0	NA	intron (NM_006345, intron 1 of 17)	AluJb|SINE|Alu	1645	NM_006345	10463		NM_006345	ENSG00000014824	SLC30A9	BILAPES|C4orf1|GAC63|HUEL|ZNT9	solute carrier family 30 member 9	protein-coding
166207	chr3	111980751	111981180	+	0	NA	intron (NR_073571, intron 1 of 2)	intron (NR_073571, intron 1 of 2)	1939	NM_018394	55347		NM_018394	ENSG00000144827	ABHD10	-	abhydrolase domain containing 10, depalmitoylase	protein-coding
127949	chr2	46545001	46546050	+	0	NA	intron (NM_012249, intron 2 of 4)	MIRb|SINE|MIR	-2948	NM_001371283	90423		NM_080653	ENSG00000250565	ATP6V1E2	ATP6E1|ATP6EL2|ATP6V1EL2|VMA4	ATPase H+ transporting V1 subunit E2	protein-coding
171008	chr3	194767201	194767400	+	0	NA	intron (NR_146990, intron 2 of 2)	L3|LINE|CR1	1409	NR_146990	105374293		NR_146990	ENSG00000230401	LINC01972	-	long intergenic non-protein coding RNA 1972	ncRNA
210044	chr7	94655201	94655480	+	0	NA	promoter-TSS (NM_001184961)	promoter-TSS (NM_001184961)	793	NM_001346717	8910		NM_003919	ENSG00000127990	SGCE	DYT11|ESG|epsilon-SG	sarcoglycan epsilon	protein-coding
49662	chr12	29104671	29105330	+	0	NA	Intergenic	Intergenic	-44278	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
222097	chr8	130457271	130457780	+	0	NA	Intergenic	Intergenic	-13851	NM_001362925	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
14916	chr1	147273651	147274000	+	0	NA	intron (NR_145686, intron 12 of 22)	intron (NR_145686, intron 12 of 22)	30683	NM_001348452	9557		NM_004284	ENSG00000131778	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1 like	protein-coding
181351	chr5	40441551	40442400	+	0	NA	Intergenic	Intergenic	-237940	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
75134	chr15	64588051	64588800	+	0	NA	intron (NM_015042, intron 2 of 9)	AluYc|SINE|Alu	114856	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
129830	chr2	72581251	72581350	+	0	NA	intron (NR_135773, intron 6 of 21)	intron (NR_135773, intron 6 of 21)	244733	NM_001321730	23233		NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2|SEMDJL3	exocyst complex component 6B	protein-coding
155221	chr22	37896051	37897280	+	0	NA	Intergenic	Intergenic	-9632	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
89694	chr16	89392751	89393350	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-37868	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
57559	chr12	122212171	122212330	+	0	NA	intron (NM_019887, intron 6 of 6)	intron (NM_019887, intron 6 of 6)	8541	NM_030765	79369		NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
175013	chr4	52465751	52465850	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	190739	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
59946	chr13	31199201	31201300	+	0	NA	intron (NM_194318, intron 1 of 14)	CpG	275	NM_194318	145173		NM_194318	ENSG00000187676	B3GLCT	B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	beta 3-glucosyltransferase	protein-coding
83415	chr16	27225421	27226100	+	0	NA	exon (NM_145080, exon 7 of 8)	exon (NM_145080, exon 7 of 8)	21785	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
156640	chr22	41623221	41623780	+	0	NA	intron (NM_001288978, intron 2 of 11)	AluY|SINE|Alu	2205	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
174415	chr4	39448521	39449650	+	0	NA	3' UTR (NM_175737, exon 5 of 5)	3' UTR (NM_175737, exon 5 of 5)	9837	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
9836	chr1	54137571	54137730	+	0	NA	intron (NM_001353655, intron 5 of 6)	intron (NM_001353655, intron 5 of 6)	15531	NM_201546	200008		NM_201546	ENSG00000157211	CDCP2	-	CUB domain containing protein 2	protein-coding
149192	chr21	23887251	23888050	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	433727	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
130244	chr2	84841451	84842150	+	0	NA	intron (NM_001080824, intron 2 of 5)	intron (NM_001080824, intron 2 of 5)	39284	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
163020	chr3	49798871	49799430	+	0	NA	exon (NM_001007540, exon 3 of 19)	exon (NM_001007540, exon 3 of 19)	723	NM_001007540	389118		NM_001007540	ENSG00000187492	CDHR4	CDH29|PRO34300	cadherin related family member 4	protein-coding
141651	chr2	241742701	241743180	+	0	NA	intron (NM_001352824, intron 4 of 9)	intron (NM_001352824, intron 4 of 9)	8310	NM_152783	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
69947	chr14	99672351	99673300	+	0	NA	intron (NM_001127258, intron 8 of 8)	intron (NM_001127258, intron 8 of 8)	-11473	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
210826	chr7	100893271	100893900	+	0	NA	exon (NM_000665, exon 2 of 5)	exon (NM_000665, exon 2 of 5)	1021	NM_001367917	43		NM_000665	ENSG00000087085	ACHE	ACEE|ARACHE|N-ACHE|YT	acetylcholinesterase (Yt blood group)	protein-coding
197417	chr6	73571621	73572100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-50828	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
9433	chr1	48530871	48531030	+	0	NA	Intergenic	Intergenic	-58742	NM_001286239	54558		NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
172405	chr4	1791271	1791980	+	0	NA	Intergenic	AluSz|SINE|Alu	-1668	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
166513	chr3	114331701	114331930	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-15246	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
169710	chr3	172109721	172109980	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	69319	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
89160	chr16	88532371	88533360	+	0	NA	exon (NM_153813, exon 9 of 10)	exon (NM_153813, exon 9 of 10)	-1812	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
151900	chr22	18904921	18905230	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1245	NM_001368242	8214		NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
89408	chr16	88832671	88833430	+	0	NA	intron (NM_000512, intron 8 of 13)	AluJb|SINE|Alu	-21122	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
56609	chr12	118120521	118121230	+	0	NA	Intergenic	LTR29|LTR|ERV1	-15249	NM_002567	5037		NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
112453	chr19	6378771	6379330	+	0	NA	TTS (NM_002096)	TTS (NM_002096)	-3134	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
149049	chr21	15058771	15059330	+	0	NA	intron (NM_003489, intron 1 of 3)	intron (NM_003489, intron 1 of 3)	5950	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
198296	chr6	100257901	100258350	+	0	NA	Intergenic	Intergenic	206331	NM_001374769	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
68001	chr14	74995071	74995650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7561	NM_014239	8892		NM_014239	ENSG00000119718	EIF2B2	EIF-2Bbeta|EIF2B|EIF2Bbeta|VWM2	eukaryotic translation initiation factor 2B subunit beta	protein-coding
120435	chr19	44141321	44142380	+	0	NA	intron (NM_006630, intron 1 of 5)	CpG	296	NM_006630	10780		NM_006630	ENSG00000263002	ZNF234	HZF4|ZNF269	zinc finger protein 234	protein-coding
141901	chr20	854521	854780	+	0	NA	Intergenic	Intergenic	10007	NM_031424	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
34007	chr10	124693521	124694130	+	0	NA	intron (NM_014661, intron 3 of 4)	L2c|LINE|L2	-10203	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
75635	chr15	67190871	67191050	+	0	NA	3' UTR (NM_001145103, exon 9 of 9)	3' UTR (NM_001145103, exon 9 of 9)	24805	NM_001145104	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
199619	chr6	119344271	119346850	+	0	NA	intron (NM_005907, intron 2 of 12)	intron (NM_005907, intron 2 of 12)	4201	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
228697	chr9	108911871	108912730	+	0	NA	exon (NM_003640, exon 11 of 37)	exon (NM_003640, exon 11 of 37)	21824	NM_001330749	8518		NM_003640	ENSG00000070061	ELP1	DYS|FD|IKAP|IKBKAP|IKI3|TOT1	elongator acetyltransferase complex subunit 1	protein-coding
231402	chr9	130939821	130940250	+	0	NA	promoter-TSS (NM_001145106)	promoter-TSS (NM_001145106)	-788	NM_032843	84929		NM_032843	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
186341	chr5	134745751	134746050	+	0	NA	intron (NM_001745, intron 3 of 3)	AluSp|SINE|Alu	7352	NM_001745	819		NM_001745	ENSG00000164615	CAMLG	CAML|CDG2Z|GET2	calcium modulating ligand	protein-coding
82347	chr16	15957301	15957830	+	0	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	7949	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
200942	chr6	139166371	139166530	+	0	NA	exon (NM_016217, exon 2 of 4)	exon (NM_016217, exon 2 of 4)	31370	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
91127	chr17	3705151	3705800	+	0	NA	Intergenic	Intergenic	-9071	NR_037928	100533970		NR_037928	ENSG00000257950	P2RX5-TAX1BP3	P2RX5|P2X5	P2RX5-TAX1BP3 readthrough (NMD candidate)	ncRNA
89195	chr16	88581521	88582100	+	0	NA	intron (NM_144604, intron 2 of 17)	intron (NM_144604, intron 2 of 17)	11407	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
41486	chr11	66239171	66239530	+	0	NA	intron (NM_018026, intron 21 of 23)	intron (NM_018026, intron 21 of 23)	-17944	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
151650	chr22	16824821	16825400	+	0	NA	Intergenic	Intergenic	-2364	NR_003607	27437		NR_003607	ENSG00000290408	HSFY1P1	CECR8|HSFYL1|HSFYP1|NCRNA00016	HSFY1 pseudogene 1	pseudo
10228	chr1	62841671	62841830	+	0	NA	intron (NM_032852, intron 10 of 10)	intron (NM_032852, intron 10 of 10)	57618	NM_032852	84938		NM_032852	ENSG00000125703	ATG4C	APG4-C|APG4C|AUTL1|AUTL3|HsAPG4C	autophagy related 4C cysteine peptidase	protein-coding
59816	chr13	30407471	30407630	+	0	NA	Intergenic	Intergenic	14694	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
100192	chr17	58755321	58757030	+	0	NA	non-coding (NR_048561, exon 1 of 6)	non-coding (NR_048561, exon 1 of 6)	306	NR_048561	22843		NM_014906	ENSG00000175175	PPM1E	CAMKPN|CaMKP-N|POPX1|PP2CH|caMKN	protein phosphatase, Mg2+/Mn2+ dependent 1E	protein-coding
207641	chr7	45035801	45036350	+	0	NA	intron (NM_001029835, intron 1 of 9)	intron (NM_001029835, intron 1 of 9)	8441	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
60189	chr13	40356471	40356830	+	0	NA	intron (NR_024506, intron 5 of 5)	L1PA2|LINE|L1	124356	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
143730	chr20	32323451	32325300	+	0	NA	intron (NM_004798, intron 5 of 8)	MER5A|DNA|hAT-Charlie	-33956	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
169567	chr3	170359451	170360000	+	0	NA	5' UTR (NM_001248008, exon 1 of 6)	5' UTR (NM_001248008, exon 1 of 6)	102	NM_001248008	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
92630	chr17	10116401	10116800	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-79943	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
15879	chr1	151497501	151497730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13772	NM_020770	57530		NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
11871	chr1	93082271	93082530	+	0	NA	intron (NM_001164393, intron 1 of 12)	AluJr4|SINE|Alu	3117	NM_007358	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
167480	chr3	129147101	129147300	+	0	NA	intron (NM_001204890, intron 5 of 12)	AluSz|SINE|Alu	13863	NM_020701	57461		NM_020701	ENSG00000240682	ISY1	FSAP33	ISY1 splicing factor homolog	protein-coding
4380	chr1	20732801	20733730	+	0	NA	promoter-TSS (NM_001103161)	promoter-TSS (NM_001103161)	-562	NM_001103161	400745		NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
14846	chr1	146371901	146372430	+	0	NA	Intergenic	AluYj4|SINE|Alu	-4642	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
85824	chr16	56995101	56995330	+	0	NA	intron (NR_169520, intron 1 of 47)	intron (NR_169520, intron 1 of 47)	5658	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
144250	chr20	34518551	34518850	+	0	NA	intron (NR_168137, intron 1 of 2)	AluJb|SINE|Alu	2278	NM_001382367	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
199787	chr6	126170871	126171250	+	0	NA	Intergenic	Intergenic	-168729	NM_001286524	387103		NM_001012507	ENSG00000203760	CENPW	C6orf173|CENP-W|CUG2	centromere protein W	protein-coding
17310	chr1	156453771	156455230	+	0	NA	Intergenic	CR1-3_Croc|LINE|CR1	-24952	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
171222	chr3	195770321	195770800	+	0	NA	intron (NM_018406, intron 5 of 24)	intron (NM_018406, intron 5 of 24)	41369	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
83388	chr16	26616401	26616800	+	0	NA	Intergenic	Intergenic	-450327	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
162308	chr3	47419671	47420000	+	0	NA	intron (NM_001320044, intron 9 of 19)	intron (NM_001320044, intron 9 of 19)	38814	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
100049	chr17	58086951	58088050	+	0	NA	intron (NM_080677, intron 2 of 2)	intron (NM_080677, intron 2 of 2)	4081	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
21250	chr1	204375121	204375380	+	0	NA	Intergenic	L2c|LINE|L2	-5531	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
42684	chr11	72609021	72609400	+	0	NA	intron (NM_001146209, intron 3 of 31)	MIRc|SINE|MIR	5920	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
178923	chr4	158811771	158812150	+	0	NA	intron (NM_001366843, intron 1 of 17)	L2a|LINE|L2	6121	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
232225	chr9	134375701	134375900	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-3495	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
230047	chr9	127395421	127395750	+	0	NA	Intergenic	Intergenic	-1553	NM_001271711	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
5131	chr1	24890701	24891250	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	28441	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
83512	chr16	27448001	27448770	+	0	NA	non-coding (NR_037158, exon 3 of 3)	non-coding (NR_037158, exon 3 of 3)	5008	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
179233	chr4	174211671	174212280	+	0	NA	intron (NR_125896, intron 1 of 4)	intron (NR_125896, intron 1 of 4)	8423	NR_125896	101928509		NR_125896	ENSG00000248174	LINC02268	-	long intergenic non-protein coding RNA 2268	ncRNA
154251	chr22	31614221	31614530	+	0	NA	intron (NM_001007467, intron 27 of 32)	intron (NM_001007467, intron 27 of 32)	7156	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
30907	chr10	87077371	87077680	+	0	NA	intron (NM_005271, intron 1 of 12)	intron (NM_005271, intron 1 of 12)	16562	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
78424	chr15	92521501	92521700	+	0	NA	Intergenic	Intergenic	49923	NR_161371	145858		NM_153040	ENSG00000183643	C15orf32	-	chromosome 15 putative open reading frame 32	ncRNA
90277	chr17	1003071	1003400	+	0	NA	TTS (NM_001322841).2	TTS (NM_001322841).2	6106	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
118625	chr19	37208371	37208930	+	0	NA	intron (NM_152279, intron 1 of 4)	intron (NM_152279, intron 1 of 4)	1886	NM_152279	92285		NM_152279	ENSG00000245680	ZNF585B	SZFP41|Zfp27	zinc finger protein 585B	protein-coding
45963	chr11	121450371	121451000	+	0	NA	Intergenic	L1MA5|LINE|L1	-1629	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
22527	chr1	222046721	222046980	+	0	NA	Intergenic	L1ME3A|LINE|L1	-68330	NR_149057	105372950		NR_149057	ENSG00000238042	LINC02257	-	long intergenic non-protein coding RNA 2257	ncRNA
111428	chr19	3797921	3798850	+	0	NA	intron (NM_002378, intron 1 of 13)	HAL1|LINE|L1	3414	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
38214	chr11	36405901	36406500	+	0	NA	intron (NM_001160167, intron 3 of 8)	intron (NM_001160167, intron 3 of 8)	5203	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
197591	chr6	80107671	80107930	+	0	NA	intron (NM_000056, intron 1 of 10)	intron (NM_000056, intron 1 of 10)	1129	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
153731	chr22	29304771	29305130	+	0	NA	Intergenic	AluY|SINE|Alu	-2073	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
187255	chr5	141431271	141431430	+	0	NA	exon (NM_003735, exon 1 of 4)	exon (NM_003735, exon 1 of 4)	843	NM_003735	26025		NM_003735	ENSG00000253159	PCDHGA12	CDH21|FIB3|PCDH-GAMMA-A12	protocadherin gamma subfamily A, 12	protein-coding
221799	chr8	127977651	127978700	+	0	NA	intron (NR_003367, intron 3 of 8)	AluJr|SINE|Alu	17542	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
125468	chr2	12310401	12310630	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	111385	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
11178	chr1	87327921	87330080	+	0	NA	5' UTR (NM_006769, exon 1 of 5)	5' UTR (NM_006769, exon 1 of 5)	120	NM_006769	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
139441	chr2	223760741	223761700	+	0	NA	intron (NM_001039569, intron 4 of 4)	Tigger10|DNA|TcMar-Tigger	76362	NM_001039569	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
234843	chrX	24481551	24481650	+	0	NA	intron (NM_001142386, intron 1 of 11)	MSTA|LTR|ERVL-MaLR	16314	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
194795	chr6	34229151	34230030	+	0	NA	Intergenic	Intergenic	-7283	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
222108	chr8	131899971	131900350	+	0	NA	Intergenic	Intergenic	-3933	NM_001323553	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
91099	chr17	3657801	3658150	+	0	NA	intron (NM_001374494, intron 8 of 10)	intron (NM_001374494, intron 8 of 10)	10603	NM_014604	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
95091	chr17	34360701	34360900	+	0	NA	intron (NM_002981, intron 2 of 2)	intron (NM_002981, intron 2 of 2)	2433	NM_002981	6346		NM_002981	ENSG00000108702	CCL1	I-309|P500|SCYA1|SISe|TCA3	C-C motif chemokine ligand 1	protein-coding
79619	chr16	1100571	1100930	+	0	NA	Intergenic	Intergenic	-4506	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
183816	chr5	83092471	83093030	+	0	NA	intron (NM_022550, intron 1 of 7)	L1M1|LINE|L1	15203	NM_001318012	7518		NM_003401	ENSG00000152422	XRCC4	SSMED|hXRCC4	X-ray repair cross complementing 4	protein-coding
176060	chr4	82430001	82431600	+	0	NA	promoter-TSS (NM_001207000)	promoter-TSS (NM_001207000)	210	NM_001292017	58478		NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145|mtnC	enolase-phosphatase 1	protein-coding
213464	chr7	138920051	138920150	+	0	NA	intron (NM_001164665, intron 1 of 19)	L2a|LINE|L2	61289	NM_001164665	57670		NM_020910	ENSG00000122778	KIAA1549	RP86	KIAA1549	protein-coding
43721	chr11	86048651	86049350	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	20084	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
162971	chr3	49690771	49690930	+	0	NA	intron (NR_135218, intron 1 of 38)	intron (NR_135218, intron 1 of 38)	1293	NM_022064	63891		NM_022064	ENSG00000164068	RNF123	FP1477|KPC1	ring finger protein 123	protein-coding
183531	chr5	79924971	79925130	+	0	NA	Intergenic	Intergenic	-11529	NR_131226	105616916		NR_131226	ENSG00000250888	LINC01455	MDONA|TCONS_00009433	long intergenic non-protein coding RNA 1455	ncRNA
137995	chr2	201253071	201253730	+	0	NA	intron (NM_033355, intron 2 of 9)	MIRc|SINE|MIR	-4635	NM_001080125	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
2311	chr1	9075001	9075200	+	0	NA	Intergenic	MER83|LTR|ERV1	-2841	NM_001328619	6518		NM_003039	ENSG00000142583	SLC2A5	GLUT-5|GLUT5	solute carrier family 2 member 5	protein-coding
20231	chr1	193184801	193185200	+	0	NA	intron (NM_003783, intron 1 of 1)	intron (NM_003783, intron 1 of 1)	1613	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
230229	chr9	127870871	127871130	+	0	NA	intron (NM_001318121, intron 5 of 6)	intron (NM_001318121, intron 5 of 6)	-1505	NR_039819	100616429		NR_039819	ENSG00000263979	MIR4672	-	microRNA 4672	ncRNA
217777	chr8	33424551	33424950	+	0	NA	intron (NM_032664, intron 3 of 4)	intron (NM_032664, intron 3 of 4)	48396	NM_032664	84750		NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
116812	chr19	18542801	18544680	+	0	NA	promoter-TSS (NM_001308373)	promoter-TSS (NM_001308373)	-167	NM_001308373	23770		NM_012181	ENSG00000105701	FKBP8	FKBP38|FKBPr38	FKBP prolyl isomerase 8	protein-coding
156892	chr22	42174071	42174700	+	0	NA	intron (NM_005650, intron 3 of 5)	intron (NM_005650, intron 3 of 5)	-29831	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
100227	chr17	59316921	59317330	+	0	NA	Intergenic	Intergenic	-14530	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
102045	chr17	74867951	74868250	+	0	NA	intron (NM_001258012, intron 2 of 11)	(TCCTCCC)n|Simple_repeat|Simple_repeat	653	NM_001258016	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
106458	chr18	13763321	13763780	+	0	NA	non-coding (NR_165427, exon 13 of 13)	non-coding (NR_165427, exon 13 of 13)	36877	NM_001378134	8731		NM_003799	ENSG00000101654	RNMT	CMT1|CMT1c|MET|Met|N7-MTase|RG7MT1|cm1p|hCMT1|hMet	RNA guanine-7 methyltransferase	protein-coding
125496	chr2	12554921	12555580	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-161622	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
36749	chr11	9317021	9317680	+	0	NA	Intergenic	AluY|SINE|Alu	-2757	NM_001165030	440026		NM_015012	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
193324	chr6	30163951	30164050	+	0	NA	exon (NM_033229, exon 1 of 7).6	exon (NM_033229, exon 1 of 7).6	454	NM_033229	89870		NM_033229	ENSG00000204610	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
100343	chr17	59898801	59899480	+	0	NA	intron (NM_001272044, intron 2 of 15)	AluSq2|SINE|Alu	6019	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
18859	chr1	167803251	167804180	+	0	NA	Intergenic	MIR3|SINE|MIR	81733	NM_024569	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
189175	chr5	171407071	171407230	+	0	NA	TTS (NM_001037738)	TTS (NM_001037738)	-12497	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
171197	chr3	195698921	195699430	+	0	NA	promoter-TSS (NR_030296).6	promoter-TSS (NR_030296).6	-226	NR_030296	693155		NR_030296	ENSG00000207650	MIR570	MIRN570|hsa-mir-570	microRNA 570	ncRNA
125837	chr2	24363201	24363400	+	0	NA	Intergenic	L2|LINE|L2	-2764	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
108173	chr18	62944651	62944750	+	0	NA	intron (NM_194449, intron 11 of 16)	intron (NM_194449, intron 11 of 16)	229159	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
200024	chr6	129662101	129662300	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	47977	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
72061	chr15	28873671	28874430	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-11924	NM_001353789	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
153959	chr22	30354751	30355630	+	0	NA	intron (NM_005877, intron 1 of 15)	AluSz6|SINE|Alu	-1434	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
231174	chr9	129897621	129898350	+	0	NA	intron (NM_001363755, intron 15 of 15)	AluSx1|SINE|Alu	28380	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
76806	chr15	77034051	77034350	+	0	NA	intron (NM_001321136, intron 13 of 15)	intron (NM_001321136, intron 13 of 15)	36909	NM_005724	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
46507	chr11	128420671	128421230	+	0	NA	Intergenic	Intergenic	101360	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
43883	chr11	88345051	88345850	+	0	NA	Intergenic	Charlie1|DNA|hAT-Charlie	-7714	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
170409	chr3	185560251	185560430	+	0	NA	Intergenic	AluY|SINE|Alu	-7752	NM_139248	200879		NM_139248	ENSG00000163898	LIPH	AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1	lipase H	protein-coding
31890	chr10	100281601	100281800	+	0	NA	intron (NM_173809, intron 2 of 4)	(TA)n|Simple_repeat|Simple_repeat	4664	NM_001001342	282991		NM_173809	ENSG00000196072	BLOC1S2	BLOS2|BORCS2|CEAP|CEAP11	biogenesis of lysosomal organelles complex 1 subunit 2	protein-coding
30336	chr10	77279251	77279800	+	0	NA	intron (NM_001271518, intron 1 of 27)	MIR1_Amn|SINE|MIR	71236	NM_001322838	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
56063	chr12	110574221	110574680	+	0	NA	intron (NM_139283, intron 1 of 5)	intron (NM_139283, intron 1 of 5)	8868	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
122439	chr19	49480251	49480730	+	0	NA	intron (NM_001204502, intron 7 of 8)	intron (NM_001204502, intron 7 of 8)	5904	NM_001204503	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
149227	chr21	25563361	25564600	+	0	NA	intron (NR_001458, intron 1 of 2)	intron (NR_001458, intron 1 of 2)	1835	NR_001458	114614		NR_001458	ENSG00000234883	MIR155HG	BIC|BIC-155|MIRHG2|NCRNA00172|miPEP155	MIR155 host gene	ncRNA
29847	chr10	72344671	72345880	+	0	NA	intron (NR_157570, intron 1 of 8)	intron (NR_157570, intron 1 of 8)	9644	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
86423	chr16	66872701	66873990	+	0	NA	Intergenic	CpG	-7170	NM_001329931	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
148937	chr21	10118721	10119250	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-294512	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
87226	chr16	69569571	69570280	+	0	NA	intron (NM_138713, intron 2 of 14)	intron (NM_138713, intron 2 of 14)	3959	NM_173215	10725		NM_006599	ENSG00000102908	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T cells 5	protein-coding
153609	chr22	27896201	27896430	+	0	NA	intron (NM_001284278, intron 6 of 11)	intron (NM_001284278, intron 6 of 11)	22899	NM_001284278	23760		NM_012399	ENSG00000180957	PITPNB	PI-TP-beta|PtdInsTP|VIB1B	phosphatidylinositol transfer protein beta	protein-coding
37541	chr11	18679551	18679650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-19179	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
141378	chr2	240700971	240701330	+	0	NA	Intergenic	CpG	9284	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
237145	chrX	107155201	107155400	+	0	NA	intron (NM_017681, intron 4 of 8)	intron (NM_017681, intron 4 of 8)	-36478	NM_001171080	55285		NM_018301	ENSG00000089682	RBM41	-	RNA binding motif protein 41	protein-coding
198268	chr6	99588251	99589730	+	0	NA	Intergenic	CpG	-17843	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
223746	chr8	144510951	144511050	+	0	NA	TTS (NM_004260)	TTS (NM_004260)	1930	NM_138431	113655		NM_138431	ENSG00000167700	MFSD3	SLC33A2	major facilitator superfamily domain containing 3	protein-coding
149343	chr21	29071851	29072280	+	0	NA	intron (NM_001282907, intron 1 of 15)	L2a|LINE|L2	1583	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
38722	chr11	46683121	46683580	+	0	NA	intron (NM_004308, intron 4 of 12)	intron (NM_004308, intron 4 of 12)	17269	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
50361	chr12	47204971	47205380	+	0	NA	intron (NM_001281429, intron 2 of 2)	LTR8|LTR|ERV1	11268	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
86375	chr16	66578701	66579500	+	0	NA	promoter-TSS (NM_001199317)	promoter-TSS (NM_001199317)	-363	NM_144673	146225		NM_144673	ENSG00000140932	CMTM2	CKLFSF2	CKLF like MARVEL transmembrane domain containing 2	protein-coding
236755	chrX	78625471	78625630	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	33778	NM_152694	203430		NM_152694	ENSG00000179300	RTL3	Mar3|Mart3|SIRH9|ZCCHC5|ZHC5	retrotransposon Gag like 3	protein-coding
63573	chr14	20454171	20456050	+	0	NA	promoter-TSS (NM_001244249)	promoter-TSS (NM_001244249)	-116	NM_080649	328		NM_001641	ENSG00000100823	APEX1	APE|APE1|APEN|APEX|APX|HAP1|REF1	apurinic/apyrimidinic endodeoxyribonuclease 1	protein-coding
31865	chr10	100167351	100168600	+	0	NA	intron (NM_006459, intron 6 of 10)	intron (NM_006459, intron 6 of 10)	18054	NM_001100626	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
11003	chr1	84622301	84622500	+	0	NA	Intergenic	MamRep1879|DNA|hAT-Tip100?	-1369	NR_125761	103695366		NR_125761		LINC01461	TCONS_00001552	long intergenic non-protein coding RNA 1461	ncRNA
5220	chr1	24986521	24986780	+	0	NA	Intergenic	MLT2D|LTR|ERVL	-21640	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
99920	chr17	56977371	56979550	+	0	NA	intron (NM_021626, intron 1 of 12)	intron (NM_021626, intron 1 of 12)	329	NM_021626	59342		NM_021626	ENSG00000121064	SCPEP1	HSCP1|RISC	serine carboxypeptidase 1	protein-coding
196005	chr6	42007551	42008480	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	40879	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
47842	chr12	6608201	6609400	+	0	NA	Intergenic	Intergenic	-1421	NM_001273	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
125004	chr2	9537921	9538180	+	0	NA	intron (NM_001382778, intron 2 of 18)	intron (NM_001382778, intron 2 of 18)	17780	NM_003183	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
205550	chr7	20280821	20281080	+	0	NA	Intergenic	Intergenic	-15758	NR_110117	101927769		NR_110117	ENSG00000226097	LOC101927769	-	uncharacterized LOC101927769	ncRNA
115051	chr19	14148021	14148580	+	0	NA	3' UTR (NM_014921, exon 23 of 23)	3' UTR (NM_014921, exon 23 of 23)	11148	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
131126	chr2	90397521	90398030	+	0	NA	Intergenic	Intergenic	-759868	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
125331	chr2	10807171	10807530	+	0	NA	intron (NM_001282706, intron 2 of 13)	AluJr|SINE|Alu	5435	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
231620	chr9	131576901	131577450	+	0	NA	3' UTR (NM_001377937, exon 23 of 23)	3' UTR (NM_001377937, exon 23 of 23)	31652	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
100076	chr17	58277201	58277950	+	0	NA	intron (NM_000250, intron 7 of 11)	intron (NM_000250, intron 7 of 11)	3360	NM_000250	4353		NM_000250	ENSG00000005381	MPO	-	myeloperoxidase	protein-coding
124890	chr2	8409971	8410130	+	0	NA	Intergenic	Intergenic	-81631	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
143398	chr20	29319721	29319980	+	0	NA	Intergenic	Intergenic	97111	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
66232	chr14	61333801	61334720	+	0	NA	intron (NM_006255, intron 1 of 13)	L2a|LINE|L2	12817	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
12035	chr1	97919001	97919950	+	0	NA	intron (NM_001160301, intron 1 of 5)	intron (NM_001160301, intron 1 of 5)	1559	NM_000110	1806		NM_000110	ENSG00000188641	DPYD	DHP|DHPDHASE|DPD|DYPD	dihydropyrimidine dehydrogenase	protein-coding
81967	chr16	11868501	11868930	+	0	NA	3' UTR (NM_002094, exon 15 of 15)	3' UTR (NM_002094, exon 15 of 15)	-17173	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
66454	chr14	61546151	61546450	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	23894	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
67598	chr14	72476721	72477500	+	0	NA	intron (NM_001370288, intron 11 of 16)	intron (NM_001370288, intron 11 of 16)	-39710	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
61140	chr13	48628371	48628530	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-25479	NM_001308465	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
186525	chr5	138361251	138361550	+	0	NA	intron (NM_016604, intron 1 of 23)	MamRep605|LTR?|LTR?	8715	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
13559	chr1	115706871	115707100	+	0	NA	intron (NM_001232, intron 8 of 10)	intron (NM_001232, intron 8 of 10)	61729	NM_001232	845		NM_001232	ENSG00000118729	CASQ2	PDIB2	calsequestrin 2	protein-coding
233194	chr9	137207271	137207430	+	0	NA	intron (NM_014434, intron 2 of 13)	intron (NM_014434, intron 2 of 13)	1650	NM_001144028	27158		NM_014434	ENSG00000188566	NDOR1	CIAE1|NR1|bA350O14.9	NADPH dependent diflavin oxidoreductase 1	protein-coding
174401	chr4	39351101	39351300	+	0	NA	intron (NM_001204747, intron 2 of 24)	AluY|SINE|Alu	15162	NM_002913	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
152255	chr22	20240271	20241250	+	0	NA	TTS (NM_023004)	TTS (NM_023004)	8451	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
176119	chr4	83082751	83083100	+	0	NA	Intergenic	L1M1|LINE|L1	26964	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
195956	chr6	41943871	41944230	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-2202	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
35714	chr11	1942001	1942750	+	0	NA	Intergenic	FRAM|SINE|Alu	-4957	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
108720	chr18	77085201	77086030	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	47168	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
234221	chrX	12984651	12985750	+	0	NA	Intergenic	Intergenic	10090	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
173177	chr4	6717701	6717950	+	0	NA	TTS (NM_018366)	TTS (NM_018366)	1651	NM_018366	55330		NM_018366	ENSG00000186222	BLOC1S4	BCAS4L|BLOS4|CNO	biogenesis of lysosomal organelles complex 1 subunit 4	protein-coding
41295	chr11	65867801	65868800	+	0	NA	TTS (NR_146598)	TTS (NR_146598)	4500	NM_016938	30008		NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin extracellular matrix protein 2	protein-coding
133944	chr2	130558251	130558550	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	-8485	NR_033930	646743		NR_033930	ENSG00000290610	PRSS40B	-	serine protease 40B (pseudogene)	pseudo
35675	chr11	1877271	1877900	+	0	NA	intron (NM_001013254, intron 1 of 10)	intron (NM_001013254, intron 1 of 10)	-2460	NR_107001	102465993		NR_107001	ENSG00000284594	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
214273	chr7	148989551	148990050	+	0	NA	TTS (NR_130107)	TTS (NR_130107)	2273	NR_130107	102723099		NR_130107	ENSG00000281189	GHET1	lncRNA-GHET1	gastric carcinoma proliferation enhancing transcript 1	ncRNA
8778	chr1	42786351	42786450	+	0	NA	intron (NM_001354602, intron 1 of 5)	intron (NM_001354602, intron 1 of 5)	1368	NM_001354602	100129924		NM_001242750	ENSG00000274386	TMEM269	-	transmembrane protein 269	protein-coding
48583	chr12	10303951	10304650	+	0	NA	promoter-TSS (NM_001114396)	promoter-TSS (NM_001114396)	-146	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
149076	chr21	15734801	15735030	+	0	NA	intron (NM_001352560, intron 1 of 23)	MIR|SINE|MIR	4933	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
190518	chr5	180562701	180563100	+	0	NA	intron (NR_163438, intron 4 of 10)	intron (NR_163438, intron 4 of 10)	21246	NM_001370474	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
195606	chr6	37643921	37644650	+	0	NA	intron (NM_153487, intron 13 of 16)	intron (NM_153487, intron 13 of 16)	53598	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
41260	chr11	65835071	65835230	+	0	NA	intron (NM_152760, intron 1 of 12)	intron (NM_152760, intron 1 of 12)	1187	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
225207	chr9	34125971	34127400	+	0	NA	promoter-TSS (NM_015397)	promoter-TSS (NM_015397)	13	NM_015397	25853		NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
68873	chr14	91317301	91319030	+	0	NA	intron (NM_001080414, intron 13 of 29)	AluJo|SINE|Alu	-64285	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
25953	chr10	11528901	11529100	+	0	NA	intron (NM_014688, intron 2 of 14)	HAL1|LINE|L1	3280	NM_001080491	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
212577	chr7	128915851	128916480	+	0	NA	Intergenic	CpG	-5456	NM_199349	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
203242	chr6	168968151	168968540	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	-3963	NR_136250	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
229664	chr9	124348821	124349080	+	0	NA	intron (NM_001166169, intron 9 of 9)	intron (NM_001166169, intron 9 of 9)	-4523	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
226717	chr9	75149851	75150530	+	0	NA	Intergenic	Intergenic	61676	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
1108	chr1	2049651	2051500	+	0	NA	promoter-TSS (NR_135509)	promoter-TSS (NR_135509)	164	NM_002744	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
52283	chr12	54580751	54581400	+	0	NA	intron (NM_006741, intron 5 of 6)	intron (NM_006741, intron 5 of 6)	7584	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
127872	chr2	45858001	45858400	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	206525	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
150259	chr21	41761821	41762280	+	0	NA	intron (NM_020639, intron 1 of 7)	intron (NM_020639, intron 1 of 7)	5002	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
223779	chr8	144579121	144579730	+	0	NA	intron (NM_001308207, intron 4 of 11)	intron (NM_001308207, intron 4 of 11)	26270	NM_025251	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
104041	chr17	80135501	80135700	+	0	NA	intron (NM_014740, intron 11 of 11)	intron (NM_014740, intron 11 of 11)	11528	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
214540	chr7	150521071	150521830	+	0	NA	TTS (NM_153236)	TTS (NM_153236)	6578	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
56470	chr12	116120271	116120500	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	28269	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
192460	chr6	24916451	24917080	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-5717	NM_014722	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
28973	chr10	63249871	63250550	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluJr|SINE|Alu	19013	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
70376	chr14	101904651	101904950	+	0	NA	intron (NM_178587, intron 9 of 11)	intron (NM_178587, intron 9 of 11)	-59773	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
65853	chr14	55049721	55049980	+	0	NA	TTS (NM_080867)	TTS (NM_080867)	-1797	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
33447	chr10	119037371	119038330	+	0	NA	intron (NM_003750, intron 20 of 21)	intron (NM_003750, intron 20 of 21)	8136	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
219961	chr8	89730851	89730950	+	0	NA	intron (NR_125822, intron 1 of 4)	AluSz|SINE|Alu	26811	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
52076	chr12	54044671	54044830	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	-9085	NM_153633	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
90757	chr17	2047671	2048380	+	0	NA	Intergenic	AluJb|SINE|Alu	1983	NR_029674	406921		NR_029674	ENSG00000267200	MIR132	MIRN132|miRNA132|mir-132	microRNA 132	ncRNA
139712	chr2	227658271	227658450	+	0	NA	Intergenic	Intergenic	-25040	NM_020161	56918		NM_020161	ENSG00000290795	SLC19A4P	C2orf83	solute carrier family 19 member 4, pseudogene	pseudo
192791	chr6	26557601	26558700	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-11174	NR_134611	105374988		NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
76281	chr15	74129101	74129400	+	0	NA	promoter-TSS (NR_027073)	promoter-TSS (NR_027073)	28	NR_152622	283731		NR_027073	ENSG00000248540	LOC283731	-	uncharacterized LOC283731	ncRNA
80491	chr16	2711971	2712650	+	0	NA	TTS (NM_031948)	TTS (NM_031948)	7914	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
80805	chr16	3431301	3432110	+	0	NA	TTS (NM_152457)	TTS (NM_152457)	11799	NM_152457	146434		NM_152457	ENSG00000167981	ZNF597	HIT-4	zinc finger protein 597	protein-coding
57080	chr12	121023371	121023530	+	0	NA	intron (NM_001261825, intron 3 of 3)	AluSq2|SINE|Alu	-6963	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
60387	chr13	40947221	40948500	+	0	NA	intron (NM_001370329, intron 6 of 9)	L1MEd|LINE|L1	-26086	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
21770	chr1	206919271	206919750	+	0	NA	intron (NM_001193338, intron 1 of 6)	AluJb|SINE|Alu	2431	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
133022	chr2	111813071	111813480	+	0	NA	intron (NM_022662, intron 28 of 47)	MER52-int|LTR|ERV1	-42141	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
212320	chr7	127323851	127324150	+	0	NA	Intergenic	Intergenic	68708	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
164975	chr3	71301171	71301730	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	3321	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
38655	chr11	46376521	46377650	+	0	NA	TTS (NR_039837)	TTS (NR_039837)	683	NR_039837	100616368		NR_039837	ENSG00000264102	MIR4688	mir-4688	microRNA 4688	ncRNA
82149	chr16	14829801	14830200	+	0	NA	Intergenic	MIRb|SINE|MIR	-3714	NM_001004067	408050		NM_001004067	ENSG00000103226	NOMO3	Nomo	NODAL modulator 3	protein-coding
26015	chr10	12241921	12242180	+	0	NA	intron (NM_006023, intron 10 of 12)	intron (NM_006023, intron 10 of 12)	45862	NM_006023	8872		NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
91329	chr17	4396001	4396600	+	0	NA	Intergenic	Intergenic	-29626	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
95321	chr17	35713101	35713500	+	0	NA	intron (NM_001282, intron 19 of 20)	intron (NM_001282, intron 19 of 20)	-18339	NM_033315	91608		NM_033315	ENSG00000270885	RASL10B	RRP17|VTS58635	RAS like family 10 member B	protein-coding
43130	chr11	75263851	75264650	+	0	NA	3' UTR (NM_004041, exon 16 of 16)	3' UTR (NM_004041, exon 16 of 16)	23476	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
35222	chr11	823851	825100	+	0	NA	intron (NM_020376, intron 9 of 9)	CpG-3788	-3444	NM_001286606	283229		NM_173584	ENSG00000177685	CRACR2B	EFCAB4A	calcium release activated channel regulator 2B	protein-coding
209682	chr7	80217301	80217500	+	0	NA	exon (NM_001256414, exon 8 of 8)	exon (NM_001256414, exon 8 of 8)	81616	NM_001256414	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
110874	chr19	2628701	2628900	+	0	NA	intron (NM_052847, intron 2 of 4)	MLT1E1A|LTR|ERVL-MaLR	-1915	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
143366	chr20	26252521	26252980	+	0	NA	Intergenic	Intergenic	-43517	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
87703	chr16	74868421	74869050	+	0	NA	Intergenic	MER21C|LTR|ERVL	-93915	NM_024306	79152		NM_024306	ENSG00000103089	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
75412	chr15	65769921	65770280	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	22193	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
226560	chr9	72367101	72367300	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-1992	NM_001102420	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
4850	chr1	23694321	23694600	+	0	NA	intron (NM_000975, intron 3 of 5)	intron (NM_000975, intron 3 of 5)	2654	NM_000975	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
229763	chr9	125191601	125192030	+	0	NA	Intergenic	AluSz|SINE|Alu	-1876	NM_001123369	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
156725	chr22	41798071	41798630	+	0	NA	intron (NM_152513, intron 30 of 30)	AluSx|SINE|Alu	-2329	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
168594	chr3	149129101	149130530	+	0	NA	exon (NM_001308258, exon 1 of 16)	exon (NM_001308258, exon 1 of 16)	177	NM_032383	84343		NM_032383	ENSG00000163755	HPS3	BLOC2S1|SUTAL	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding
93184	chr17	17803851	17804150	+	0	NA	intron (NM_030665, intron 4 of 5)	L2b|LINE|L2	9545	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
215732	chr8	1779451	1779750	+	0	NA	intron (NM_018941, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	-15016	NR_134303	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
213008	chr7	131008921	131009830	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	95911	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
77969	chr15	89379971	89380130	+	0	NA	intron (NR_133001, intron 3 of 6)	intron (NR_133001, intron 3 of 6)	2008	NR_015411	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
103927	chr17	79829271	79829950	+	0	NA	Intergenic	Intergenic	6158	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
137482	chr2	197131801	197132400	+	0	NA	intron (NM_153697, intron 4 of 9)	intron (NM_153697, intron 4 of 9)	-65891	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
233929	chrX	2263921	2264630	+	0	NA	intron (NM_145177, intron 5 of 6)	intron (NM_145177, intron 5 of 6)	236264	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
88812	chr16	87404071	87404230	+	0	NA	3' UTR (NM_022818, exon 4 of 4)	3' UTR (NM_022818, exon 4 of 4)	11814	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
32488	chr10	102677321	102677780	+	0	NA	intron (NM_004311, intron 5 of 5)	intron (NM_004311, intron 5 of 5)	33055	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
219855	chr8	84469651	84469750	+	0	NA	intron (NM_001354308, intron 2 of 9)	L1PA2|LINE|L1	54216	NM_001354308	138046		NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein like	protein-coding
226689	chr9	75101871	75102030	+	0	NA	intron (NM_012383, intron 1 of 9)	intron (NM_012383, intron 1 of 9)	13436	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
11669	chr1	91820351	91820450	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	65751	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
194822	chr6	34288601	34288800	+	0	NA	3' UTR (NM_001202470, exon 9 of 9)	3' UTR (NM_001202470, exon 9 of 9)	-39592	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
186847	chr5	139456071	139456230	+	0	NA	intron (NM_001293739, intron 5 of 9)	AluSz|SINE|Alu	6593	NM_001293739	641700		NM_001077693	ENSG00000249751	ECSCR	ARIA|ECSM2	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding
15661	chr1	150878771	150879130	+	0	NA	Intergenic	AluSg|SINE|Alu	-2351	NM_178427	405		NM_001668	ENSG00000143437	ARNT	ARNT1|HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2	aryl hydrocarbon receptor nuclear translocator	protein-coding
158709	chr3	8307671	8307830	+	0	NA	intron (NR_033378, intron 3 of 3)	MER20|DNA|hAT-Charlie	193908	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
222824	chr8	142479851	142480150	+	0	NA	intron (NM_001702, intron 9 of 30)	MIR|SINE|MIR	30351	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
173199	chr4	6790501	6790700	+	0	NA	intron (NM_001100590, intron 1 of 8)	AluJr|SINE|Alu	7868	NM_001100590	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
31423	chr10	95739121	95739380	+	0	NA	intron (NM_001098175, intron 1 of 9)	Tigger1|DNA|TcMar-Tigger	-16402	NM_001312654	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
198323	chr6	101071071	101071300	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-189813	NM_022091	10973		NM_006828	ENSG00000112249	ASCC3	ASC1p200|HELIC1|MRT81|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
198247	chr6	99417101	99418450	+	0	NA	intron (NM_001322406, intron 1 of 12)	AluSq2|SINE|Alu	-7096	NR_125843	101927365		NR_125843		PNISR-AS1	-	PNISR antisense RNA 1	ncRNA
71213	chr14	105090051	105091150	+	0	NA	Intergenic	Intergenic	-3547	NR_110546	102723354		NR_110546		LINC02298	-	long intergenic non-protein coding RNA 2298	ncRNA
86865	chr16	67944221	67944630	+	0	NA	promoter-TSS (NM_000229)	promoter-TSS (NM_000229)	-305	NM_000229	3931		NM_000229	ENSG00000213398	LCAT	-	lecithin-cholesterol acyltransferase	protein-coding
50871	chr12	49184121	49184700	+	0	NA	TTS (NM_001270400)	TTS (NM_001270400)	4670	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
85978	chr16	57412821	57413080	+	0	NA	intron (NM_002987, intron 1 of 3)	intron (NM_002987, intron 1 of 3)	8183	NM_002987	6361		NM_002987	ENSG00000102970	CCL17	A-152E5.3|ABCD-2|SCYA17|TARC	C-C motif chemokine ligand 17	protein-coding
142503	chr20	4780301	4780800	+	0	NA	3' UTR (NM_014737, exon 12 of 12)	3' UTR (NM_014737, exon 12 of 12)	34573	NM_170774	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
31375	chr10	93894901	93895200	+	0	NA	intron (NR_144336, intron 1 of 2)	intron (NR_144336, intron 1 of 2)	1072	NR_144336	159371		NM_153226	ENSG00000176273	SLC35G1	C10orf60|POST|TMEM20	solute carrier family 35 member G1	protein-coding
61017	chr13	48149051	48149480	+	0	NA	Intergenic	Intergenic	-54124	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
111872	chr19	4647971	4648880	+	0	NA	intron (NM_001167942, intron 1 of 1)	intron (NM_001167942, intron 1 of 1)	8408	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
128140	chr2	48350171	48350800	+	0	NA	intron (NR_164691, intron 2 of 4)	L1MEg|LINE|L1	35803	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
228646	chr9	107173471	107173630	+	0	NA	Intergenic	AluSz6|SINE|Alu	-70562	NR_126029	340512		NR_126029	ENSG00000230782	LOC340512	-	uncharacterized LOC340512	ncRNA
169989	chr3	179603951	179605600	+	0	NA	promoter-TSS (NM_020409)	promoter-TSS (NM_020409)	-12	NM_001199958	4711		NM_002492	ENSG00000136521	NDUFB5	CISGDH|SGDH	NADH:ubiquinone oxidoreductase subunit B5	protein-coding
1031	chr1	1874121	1875450	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSx3|SINE|Alu	16302	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
173042	chr4	4871521	4871780	+	0	NA	Intergenic	CpG	11985	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
42643	chr11	72423771	72424150	+	0	NA	intron (NM_001258394, intron 2 of 17)	intron (NM_001258394, intron 2 of 17)	10571	NM_030813	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
218463	chr8	48920501	48920800	+	0	NA	intron (NM_003068, intron 1 of 2)	intron (NM_003068, intron 1 of 2)	779	NM_003068	6591		NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding
22170	chr1	212254551	212255250	+	0	NA	intron (NR_125984, intron 1 of 3)	intron (NR_125984, intron 1 of 3)	-20164	NR_125982	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
139516	chr2	224562871	224563030	+	0	NA	intron (NM_003590, intron 1 of 15)	MIRb|SINE|MIR	7005	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
164641	chr3	66479721	66479980	+	0	NA	intron (NM_001377345, intron 1 of 18)	L1MB7|LINE|L1	20204	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
212599	chr7	129091521	129092000	+	0	NA	Intergenic	Intergenic	-34511	NR_002144	407835		NR_002144		LOC407835	-	mitogen-activated protein kinase kinase 2 pseudogene	pseudo
86890	chr16	67997621	67997880	+	0	NA	intron (NM_022355, intron 1 of 10)	intron (NM_022355, intron 1 of 10)	1734	NM_022355	64174		NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
27186	chr10	28555001	28555380	+	0	NA	intron (NM_100486, intron 3 of 12)	L2|LINE|L2	22072	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
12258	chr1	100449321	100450300	+	0	NA	intron (NM_001319212, intron 7 of 13)	MamGypsy2-I|LTR|Gypsy	-88329	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
139831	chr2	230420971	230421730	+	0	NA	intron (NM_001080391, intron 2 of 28)	HAL1|LINE|L1	4594	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
204480	chr7	4743051	4743880	+	0	NA	intron (NM_001037165, intron 2 of 8)	AluSz|SINE|Alu	-32158	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
28062	chr10	43285851	43286230	+	0	NA	Intergenic	Intergenic	-18975	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
144207	chr20	34334801	34335200	+	0	NA	Intergenic	Intergenic	-23198	NM_001161766	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
50178	chr12	45992921	45993180	+	0	NA	Intergenic	Intergenic	-2476	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
151607	chr22	11816401	11816650	+	0	NA	Intergenic	Intergenic	-80881	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
24245	chr1	236277121	236277580	+	0	NA	intron (NM_019891, intron 1 of 15)	AluSz6|SINE|Alu	4608	NM_019891	56605		NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding
81749	chr16	11389521	11389780	+	0	NA	intron (NM_001370704, intron 60 of 66)	AluSq|SINE|Alu	44191	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
85741	chr16	56683701	56684050	+	0	NA	intron (NM_005952, intron 2 of 2)	intron (NM_005952, intron 2 of 2)	1405	NM_005952	4501		NM_005952	ENSG00000187193	MT1X	MT-1l|MT1	metallothionein 1X	protein-coding
230096	chr9	127565621	127566280	+	0	NA	intron (NM_001035534, intron 1 of 13)	(CA)n|Simple_repeat|Simple_repeat	3123	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
166964	chr3	125374621	125376050	+	0	NA	promoter-TSS (NM_001348428)	promoter-TSS (NM_001348428)	-10	NM_021964	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
106183	chr18	10528371	10528930	+	0	NA	intron (NM_003826, intron 1 of 11)	L2c|LINE|L2	2623	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
87135	chr16	69129651	69130050	+	0	NA	intron (NM_001002847, intron 1 of 2)	intron (NM_001002847, intron 1 of 2)	2309	NM_001366604	113455421		NM_001002847	ENSG00000286140	DERPC	-	DERPC proline and glycine rich nuclear protein	protein-coding
154087	chr22	30939271	30939680	+	0	NA	intron (NM_014941, intron 13 of 26)	intron (NM_014941, intron 13 of 26)	17167	NR_026920	150291		NM_153044	ENSG00000235989	MORC2-AS1	C22orf27|NCRNA00325	MORC2 antisense RNA 1	ncRNA
146318	chr20	49216651	49217650	+	0	NA	intron (NM_001319135, intron 1 of 14)	LTR50|LTR|ERVL	2145	NM_001319135	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
215536	chr7	158780971	158781400	+	0	NA	intron (NM_020728, intron 6 of 21)	intron (NM_020728, intron 6 of 21)	48324	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
228990	chr9	113572171	113572530	+	0	NA	intron (NM_001351526, intron 2 of 8)	intron (NM_001351526, intron 2 of 8)	7293	NM_001351526	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
120845	chr19	45516221	45516480	+	0	NA	intron (NM_003370, intron 1 of 12)	intron (NM_003370, intron 1 of 12)	8871	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
91570	chr17	5184051	5184950	+	0	NA	intron (NM_032530, intron 1 of 1)	intron (NM_032530, intron 1 of 1)	7368	NM_032530	84622		NM_032530	ENSG00000180626	ZNF594	-	zinc finger protein 594	protein-coding
61834	chr13	75876321	75876780	+	0	NA	promoter-TSS (NR_126373)	promoter-TSS (NR_126373)	-336	NR_126373	104326189		NR_126373	ENSG00000223458	LMO7DN-IT1	C13orf45-IT1|TCONS_00021569	LMO7DN intronic transcript 1	ncRNA
120370	chr19	43623201	43623400	+	0	NA	3' UTR (NM_145296, exon 9 of 9)	3' UTR (NM_145296, exon 9 of 9)	-3671	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
185943	chr5	132955651	132955950	+	0	NA	intron (NM_014423, intron 1 of 20)	(TA)n|Simple_repeat|Simple_repeat	7834	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
151957	chr22	19131101	19131300	+	0	NA	promoter-TSS (NM_053006)	promoter-TSS (NM_053006)	-108	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
98066	chr17	45485451	45485880	+	0	NA	intron (NM_014798, intron 1 of 11).3	AluSz|SINE|Alu	5056	NR_027774	9842		NM_014798	ENSG00000225190	PLEKHM1	AP162|B2|OPTA3|OPTB6	pleckstrin homology and RUN domain containing M1	protein-coding
103174	chr17	77438201	77438900	+	0	NA	intron (NM_001293696, intron 1 of 9)	MLT1D|LTR|ERVL-MaLR	-12199	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
215811	chr8	2623421	2623680	+	0	NA	promoter-TSS (NR_125423)	promoter-TSS (NR_125423)	-185	NR_125423	101927815		NR_125423	ENSG00000254319	LINC03021	-	long intergenic non-protein coding RNA 3021	ncRNA
20557	chr1	198712901	198713800	+	0	NA	intron (NM_002838, intron 12 of 32)	intron (NM_002838, intron 12 of 32)	74310	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
97182	chr17	42675871	42676230	+	0	NA	promoter-TSS (NR_073574)	promoter-TSS (NR_073574)	-39	NR_073574	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
29648	chr10	71855621	71855880	+	0	NA	Intergenic	Intergenic	-4499	NM_001042466	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
51228	chr12	50761521	50762430	+	0	NA	Intergenic	Intergenic	-2126	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
236114	chrX	57289101	57289300	+	0	NA	intron (NM_174912, intron 1 of 10)	MIRb|SINE|MIR	2346	NR_148564	158584		NM_174912	ENSG00000165591	FAAH2	AMDD	fatty acid amide hydrolase 2	protein-coding
161240	chr3	39226121	39227180	+	0	NA	Intergenic	L1MD1|LINE|L1	-34055	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
95629	chr17	37701401	37701780	+	0	NA	intron (NM_000458, intron 6 of 8)	intron (NM_000458, intron 6 of 8)	43469	NM_001304286	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
91621	chr17	5392571	5392730	+	0	NA	intron (NM_002532, intron 9 of 16)	L1ME3B|LINE|L1	-26991	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
125447	chr2	12057201	12058230	+	0	NA	intron (NR_110196, intron 2 of 5)	intron (NR_110196, intron 2 of 5)	50599	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
17049	chr1	156087771	156088130	+	0	NA	intron (NM_001282625, intron 2 of 12)	AluSc|SINE|Alu	5377	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
21934	chr1	207863821	207864580	+	0	NA	Intergenic	Intergenic	-41497	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
171146	chr3	195558521	195559030	+	0	NA	Intergenic	Intergenic	-15450	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
159095	chr3	12482871	12483030	+	0	NA	Intergenic	Intergenic	-1482	NM_001321277	80746		NM_025265	ENSG00000154743	TSEN2	PCH2B|SEN2|SEN2L	tRNA splicing endonuclease subunit 2	protein-coding
119015	chr19	38905001	38906150	+	0	NA	intron (NR_161470, intron 3 of 4)	intron (NR_161470, intron 3 of 4)	5606	NR_040515	4793		NM_002503	ENSG00000104825	NFKBIB	IKBB|TRIP9	NFKB inhibitor beta	protein-coding
77747	chr15	85748621	85749100	+	0	NA	3' UTR (NM_001270546, exon 29 of 29)	3' UTR (NM_001270546, exon 29 of 29)	9865	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
43844	chr11	87219371	87219550	+	0	NA	intron (NM_022918, intron 5 of 14)	intron (NM_022918, intron 5 of 14)	181526	NM_001168724	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
103402	chr17	78176301	78176950	+	0	NA	intron (NM_001363848, intron 4 of 5)	intron (NM_001363848, intron 4 of 5)	8044	NM_004710	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
113725	chr19	10464521	10465050	+	0	NA	intron (NM_001111307, intron 14 of 14)	AluJb|SINE|Alu	11853	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
230068	chr9	127443051	127443730	+	0	NA	intron (NM_001322260, intron 5 of 5)	AluJr|SINE|Alu	5247	NR_002449	26783		NR_002449	ENSG00000201302	SNORA65	RNU65|U65	small nucleolar RNA, H/ACA box 65	snoRNA
158631	chr3	4975821	4976450	+	0	NA	intron (NR_125915, intron 1 of 3)	intron (NR_125915, intron 1 of 3)	-3302	NM_003670	8553		NM_003670	ENSG00000134107	BHLHE40	BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14	basic helix-loop-helix family member e40	protein-coding
154314	chr22	31958521	31959180	+	0	NA	Intergenic	Intergenic	-11973	NR_149128	105372999		NR_149128		LINC02558	-	long intergenic non-protein coding RNA 2558	ncRNA
136130	chr2	173962001	173962350	+	0	NA	intron (NM_001172712, intron 3 of 6)	intron (NM_001172712, intron 3 of 6)	1705	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
62740	chr13	106560821	106561180	+	0	NA	intron (NM_018011, intron 1 of 3)	intron (NM_018011, intron 1 of 3)	7137	NM_018011	55082		NM_018011	ENSG00000134884	ARGLU1	-	arginine and glutamate rich 1	protein-coding
114394	chr19	12613501	12615150	+	0	NA	intron (NM_153358, intron 1 of 3)	AluSx|SINE|Alu	3405	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
161573	chr3	42839571	42840080	+	0	NA	intron (NM_001296, intron 2 of 2)	intron (NM_001296, intron 2 of 2)	30380	NM_001296	1238		NM_001296	ENSG00000144648	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
148630	chr21	5723421	5723680	+	0	NA	Intergenic	Intergenic	154346	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
122849	chr19	50473521	50474000	+	0	NA	intron (NM_001308429, intron 3 of 4)	AluSx1|SINE|Alu	-2747	NM_206538	284361		NM_175063	ENSG00000161671	EMC10	C19orf63|HSM1|HSS1|NEDDFAS	ER membrane protein complex subunit 10	protein-coding
236636	chrX	74610751	74611050	+	0	NA	intron (NM_016120, intron 1 of 3)	AluSg|SINE|Alu	3724	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
120527	chr19	44890311	44892230	+	0	NA	promoter-TSS (NM_006114)	promoter-TSS (NM_006114)	16	NM_001128917	10452		NM_006114	ENSG00000130204	TOMM40	C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40	translocase of outer mitochondrial membrane 40	protein-coding
169548	chr3	170179871	170180700	+	0	NA	intron (NM_024947, intron 1 of 14)	AluJo|SINE|Alu	1448	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
15369	chr1	150108971	150111700	+	0	NA	intron (NR_103998, intron 12 of 13)	intron (NR_103998, intron 12 of 13)	-39099	NM_001304722	51177		NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding
160676	chr3	32236821	32237280	+	0	NA	Intergenic	Intergenic	-1629	NM_001320308	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
11361	chr1	89629371	89629530	+	0	NA	intron (NR_033981, intron 2 of 2)	intron (NR_033981, intron 2 of 2)	3444	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
150883	chr21	44132971	44134480	+	0	NA	promoter-TSS (NM_004649).2	promoter-TSS (NM_004649).2	42	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
235035	chrX	40080721	40080980	+	0	NA	intron (NM_001123384, intron 1 of 13)	(GT)n|Simple_repeat|Simple_repeat	17108	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
223797	chr8	144782401	144783000	+	0	NA	intron (NM_001378027, intron 1 of 6)	AluJb|SINE|Alu	4617	NM_001378029	80778		NM_030580	ENSG00000196378	ZNF34	KOX32	zinc finger protein 34	protein-coding
63605	chr14	20531001	20531280	+	0	NA	Intergenic	Intergenic	26907	NM_001012975	338879		NM_001012975	ENSG00000182545	RNASE10	RAH1|RNASE9	ribonuclease A family member 10 (inactive)	protein-coding
234433	chrX	16855971	16856330	+	0	NA	intron (NM_002893, intron 5 of 11)	L1MB7|LINE|L1	13713	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
3896	chr1	17059571	17059930	+	0	NA	Intergenic	Intergenic	-5718	NM_003000	6390		NM_003000	ENSG00000117118	SDHB	CWS2|IP|MC2DN4|PGL4|PPGL4|SDH|SDH1|SDH2|SDHIP	succinate dehydrogenase complex iron sulfur subunit B	protein-coding
180181	chr5	1479551	1480450	+	0	NA	intron (NM_024830, intron 7 of 13)	intron (NM_024830, intron 7 of 13)	30856	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
112188	chr19	5669551	5670250	+	0	NA	Intergenic	Intergenic	10338	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
173924	chr4	25330771	25331900	+	0	NA	intron (NM_024936, intron 3 of 12)	AluJr|SINE|Alu	18561	NM_024936	29063		NM_014150	ENSG00000168228	ZCCHC4	HSPC052|ZGRF4	zinc finger CCHC-type containing 4	protein-coding
198029	chr6	90154321	90154780	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	142293	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
33826	chr10	123913621	123913880	+	0	NA	Intergenic	Intergenic	-21943	NM_198148	119587		NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	carboxypeptidase X, M14 family member 2	protein-coding
188509	chr5	154940651	154941430	+	0	NA	promoter-TSS (NM_001014990)	promoter-TSS (NM_001014990)	-33	NM_014180	29093		NM_014180	ENSG00000082515	MRPL22	HSPC158|L22mt|MRP-L22|MRP-L25|RPML25|uL22m	mitochondrial ribosomal protein L22	protein-coding
210595	chr7	100383171	100383330	+	0	NA	intron (NM_178273, intron 2 of 4)	intron (NM_178273, intron 2 of 4)	9763	NM_013439	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
88958	chr16	87851071	87851230	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-2746	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
186868	chr5	139488351	139488650	+	0	NA	Intergenic	Intergenic	-5742	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
64155	chr14	22902701	22902900	+	0	NA	intron (NM_018107, intron 9 of 12)	AluSx1|SINE|Alu	16349	NM_001352765	55147		NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding
201022	chr6	141484671	141485350	+	0	NA	Intergenic	MER57C2|LTR|ERV1	-648149	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
162645	chr3	48839571	48840350	+	0	NA	intron (NM_004157, intron 1 of 10)	L1MB4|LINE|L1	7914	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
18696	chr1	167432471	167432700	+	0	NA	intron (NM_198053, intron 7 of 7)	intron (NM_198053, intron 7 of 7)	85944	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
225250	chr9	34255951	34256680	+	0	NA	exon (NM_194313, exon 11 of 13)	exon (NM_194313, exon 11 of 13)	72953	NM_194313	347240		NM_194313	ENSG00000186638	KIF24	C9orf48|bA571F15.4	kinesin family member 24	protein-coding
54903	chr12	96045601	96046150	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-2355	NM_001256643	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
49000	chr12	13980771	13980930	+	0	NA	intron (NM_000834, intron 1 of 13)	intron (NM_000834, intron 1 of 13)	752	NM_000834	2904		NM_000834	ENSG00000273079	GRIN2B	DEE27|EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3	glutamate ionotropic receptor NMDA type subunit 2B	protein-coding
75910	chr15	70086821	70087080	+	0	NA	intron (NM_001282982, intron 2 of 17)	intron (NM_001282982, intron 2 of 17)	-7482	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
230172	chr9	127780011	127781450	+	0	NA	Intergenic	Intergenic	-2064	NM_170600	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
166132	chr3	111392601	111393200	+	0	NA	Intergenic	MER66C|LTR|ERV1	-149297	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
48544	chr12	10220421	10220900	+	0	NA	exon (NM_001363598, exon 3 of 3)	exon (NM_001363598, exon 3 of 3)	7783	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
14427	chr1	144368651	144369380	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	4644	NM_001164261	645142		NM_001164261	ENSG00000289549	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding
199802	chr6	127291251	127291950	+	0	NA	intron (NM_001139510, intron 5 of 5)	intron (NM_001139510, intron 5 of 5)	24736	NM_001242850	81847		NM_030963	ENSG00000118518	RNF146	-	ring finger protein 146	protein-coding
80780	chr16	3197851	3198300	+	0	NA	intron (NM_001370639, intron 3 of 3)	intron (NM_001370639, intron 3 of 3)	8953	NM_012360	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
184189	chr5	95834271	95835250	+	0	NA	promoter-TSS (NR_157807)	promoter-TSS (NR_157807)	-67	NR_157807	102724720		NR_157807		LOC102724720	-	uncharacterized LOC102724720	ncRNA
5561	chr1	25906201	25907850	+	0	NA	promoter-TSS (NR_037481)	promoter-TSS (NR_037481)	-148	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
175356	chr4	69764171	69764530	+	0	NA	Intergenic	L1MB2|LINE|L1	-3730	NM_014465	27284		NM_014465	ENSG00000173597	SULT1B1	ST1B1|ST1B2|SULT1B2	sulfotransferase family 1B member 1	protein-coding
214718	chr7	151013001	151014630	+	0	NA	exon (NM_000603, exon 26 of 27)	exon (NM_000603, exon 26 of 27)	10684	NM_001317056	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
48052	chr12	7017001	7017380	+	0	NA	intron (NM_005768, intron 1 of 12)	intron (NM_005768, intron 1 of 12)	1286	NM_005768	10162		NM_005768	ENSG00000111684	LPCAT3	C3F|LPCAT|LPLAT 5|LPLAT12|LPSAT|MBOAT5|OACT5|nessy	lysophosphatidylcholine acyltransferase 3	protein-coding
116731	chr19	18463101	18463900	+	0	NA	intron (NM_006532, intron 4 of 11)	AluSx4|SINE|Alu	-25367	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
221777	chr8	127930601	127930800	+	0	NA	intron (NR_003367, intron 2 of 8)	intron (NR_003367, intron 2 of 8)	18023	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
209033	chr7	74569521	74569980	+	0	NA	intron (NM_001199207, intron 22 of 26)	intron (NM_001199207, intron 22 of 26)	-26218	NR_162116	113218504		NR_162116		MIR10525	-	microRNA 10525	ncRNA
115287	chr19	14566451	14567200	+	0	NA	TTS (NR_038103)	TTS (NR_038103)	5241	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
69538	chr14	96500251	96500730	+	0	NA	Intergenic	Intergenic	1836	NR_122121	730202		NR_122121		PAPOLA-DT	-	PAPOLA divergent transcript	ncRNA
50003	chr12	42299321	42300200	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	24099	NR_107005	102467003		NR_107005	ENSG00000278520	MIR7851	hsa-mir-7851	microRNA 7851	ncRNA
56972	chr12	120540071	120540430	+	0	NA	intron (NM_001330474, intron 1 of 16)	AluJb|SINE|Alu	5894	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
126933	chr2	33321251	33321750	+	0	NA	intron (NM_001166266, intron 20 of 28)	intron (NM_001166266, intron 20 of 28)	-97016	NR_039628	100616136		NR_039628	ENSG00000283591	MIR4430	-	microRNA 4430	ncRNA
15167	chr1	149057371	149057750	+	0	NA	intron (NM_001277444, intron 22 of 24)	intron (NM_001277444, intron 22 of 24)	24751	NM_001277444	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
101929	chr17	74471321	74471850	+	0	NA	intron (NM_001256841, intron 1 of 5)	MIRb|SINE|MIR	4951	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
231927	chr9	133112321	133113180	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	8490	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
163593	chr3	51974701	51976000	+	0	NA	promoter-TSS (NM_001146314)	promoter-TSS (NM_001146314)	286	NM_001316331	100526760		NM_001316331	ENSG00000114786	ABHD14A-ACY1	-	ABHD14A-ACY1 readthrough	protein-coding
215084	chr7	155000771	155001200	+	0	NA	intron (NM_007349, intron 1 of 20)	L2c|LINE|L2	2139	NM_007349	22976		NM_007349	ENSG00000157212	PAXIP1	CAGF28|CAGF29|PACIP1|PAXIP1L|PTIP|TNRC2	PAX interacting protein 1	protein-coding
56301	chr12	112408371	112410780	+	0	NA	promoter-TSS (NM_001024662)	promoter-TSS (NM_001024662)	39	NM_000970	6128		NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1|eL6	ribosomal protein L6	protein-coding
33051	chr10	110862521	110863080	+	0	NA	Intergenic	Intergenic	8104	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
27208	chr10	28592821	28593380	+	0	NA	intron (NM_100486, intron 6 of 12)	intron (NM_100486, intron 6 of 12)	59982	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
19263	chr1	172700701	172701280	+	0	NA	Intergenic	Intergenic	41887	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
88241	chr16	82368001	82368200	+	0	NA	Intergenic	Intergenic	-197876	NM_005792	10200		NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
38526	chr11	45896701	45896900	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	10471	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
205507	chr7	18178001	18178480	+	0	NA	intron (NM_001321868, intron 2 of 25)	AluSx|SINE|Alu	-50931	NR_031635	100302140		NR_031635	ENSG00000221393	MIR1302-6	MIRN1302-6|hsa-mir-1302-6	microRNA 1302-6	ncRNA
228679	chr9	107425151	107425480	+	0	NA	intron (NR_121581, intron 7 of 7)	intron (NR_121581, intron 7 of 7)	41270	NR_121581	101928720		NR_121581		LINC01509	PRCAT37	long intergenic non-protein coding RNA 1509	ncRNA
135509	chr2	162011321	162012550	+	0	NA	exon (NM_001379606, exon 19 of 25)	exon (NM_001379606, exon 19 of 25)	62280	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
92915	chr17	16525551	16525650	+	0	NA	Intergenic	AluSp|SINE|Alu	-33407	NM_207387	388341		NM_207387	ENSG00000181350	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
35503	chr11	1536951	1537400	+	0	NA	Intergenic	AluSx1|SINE|Alu	35096	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
71335	chr14	105419451	105420530	+	0	NA	promoter-TSS (NR_125384)	promoter-TSS (NR_125384)	163	NM_001203258	9112		NM_004689	ENSG00000182979	MTA1	-	metastasis associated 1	protein-coding
94478	chr17	29273071	29273500	+	0	NA	intron (NM_020772, intron 2 of 3)	AluSx4|SINE|Alu	20863	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
40567	chr11	64351071	64351980	+	0	NA	exon (NM_032251, exon 18 of 27)	exon (NM_032251, exon 18 of 27)	-7637	NM_001300802	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
72303	chr15	31179621	31180000	+	0	NA	Intergenic	L1MDb|LINE|L1	-18537	NM_001252020	4308		NM_002420	ENSG00000134160	TRPM1	CSNB1C|LTRPC1|MLSN1	transient receptor potential cation channel subfamily M member 1	protein-coding
70866	chr14	103717301	103717980	+	0	NA	intron (NM_024071, intron 1 of 6)	intron (NM_024071, intron 1 of 6)	1830	NM_024071	79038		NM_024071	ENSG00000100711	ZFYVE21	HCVP7TP1|ZF21	zinc finger FYVE-type containing 21	protein-coding
69769	chr14	99168851	99169300	+	0	NA	TTS (NM_138576)	TTS (NM_138576)	103122	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
238342	chrX	149547101	149547300	+	0	NA	3' UTR (NM_001324280, exon 5 of 5)	3' UTR (NM_001324280, exon 5 of 5)	2680	NM_001171909	91966		NM_178124	ENSG00000197620	EOLA1	CXorf40|CXorf40A	endothelium and lymphocyte associated ASCH domain 1	protein-coding
223542	chr8	144144301	144144700	+	0	NA	Intergenic	Intergenic	-3516	NM_032450	727957		NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat like repeat family member 1	protein-coding
5498	chr1	25744101	25744300	+	0	NA	intron (NM_001385182, intron 3 of 12)	intron (NM_001385182, intron 3 of 12)	48045	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
101194	chr17	65414151	65414450	+	0	NA	Intergenic	Intergenic	-43241	NR_131984	105827617		NR_131984	ENSG00000263520	LINC02563	CRAT40	long intergenic non-protein coding RNA 2563	ncRNA
47211	chr12	850101	850300	+	0	NA	intron (NM_018979, intron 4 of 27)	L1PA4|LINE|L1	82876	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
116959	chr19	18858851	18859400	+	0	NA	intron (NM_001297549, intron 15 of 23)	intron (NM_001297549, intron 15 of 23)	27166	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
238193	chrX	136935401	136936080	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-54960	NR_028476	27316		NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|MRXSG|MRXSH|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein X-linked	protein-coding
29426	chr10	70293201	70293400	+	0	NA	Intergenic	MIR|SINE|MIR	-9296	NM_022146	64106		NM_022146	ENSG00000148734	NPFFR1	GPR147|NPFF1|NPFF1R1|OT7T022	neuropeptide FF receptor 1	protein-coding
205886	chr7	25109421	25110100	+	0	NA	Intergenic	MER4A1|LTR|ERV1	15500	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
239201	chrY	12915921	12916780	+	0	NA	exon (NM_001122665, exon 14 of 18)	exon (NM_001122665, exon 14 of 18)	10645	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
147604	chr20	62067971	62068600	+	0	NA	Intergenic	Intergenic	-2475	NM_003185	6874		NM_003185	ENSG00000130699	TAF4	MRD73|TAF(II)130|TAF(II)135|TAF2C|TAF2C1|TAF4A|TAFII-130|TAFII-135|TAFII130|TAFII135	TATA-box binding protein associated factor 4	protein-coding
194478	chr6	33213321	33214350	+	0	NA	Intergenic	Intergenic	5335	NM_002931	6015		NM_002931	ENSG00000204227	RING1	RING1A|RNF1	ring finger protein 1	protein-coding
170224	chr3	184177021	184177430	+	0	NA	intron (NM_001025205, intron 2 of 10)	intron (NM_001025205, intron 2 of 10)	2370	NM_004068	1173		NM_004068	ENSG00000161203	AP2M1	AP50|CLAPM1|MRD60|mu2	adaptor related protein complex 2 subunit mu 1	protein-coding
68363	chr14	77719351	77719450	+	0	NA	intron (NM_001318844, intron 12 of 12)	AluSg|SINE|Alu	11297	NM_031210	81892		NM_031210	ENSG00000119705	SLIRP	C14orf156|DC50|PD04872	SRA stem-loop interacting RNA binding protein	protein-coding
92727	chr17	14296671	14296830	+	0	NA	Intergenic	LTR33|LTR|ERVL	-4331	NR_130138	9953		NM_006041	ENSG00000125430	HS3ST3B1	3-OST-3B|3OST3B1|h3-OST-3B	heparan sulfate-glucosamine 3-sulfotransferase 3B1	protein-coding
103620	chr17	78734521	78735430	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	1927	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
93143	chr17	17743921	17744180	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	22252	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
215317	chr7	157345951	157346280	+	0	NA	intron (NM_001363676, intron 1 of 6)	intron (NM_001363676, intron 1 of 6)	9111	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
12941	chr1	110726351	110727300	+	0	NA	Intergenic	L2c|LINE|L2	-51885	NM_002232	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
203126	chr6	166757671	166758050	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	104665	NM_001006932	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
116609	chr19	18278501	18279000	+	0	NA	TTS (NM_001286968)	TTS (NM_001286968)	2872	NM_001286968	3727		NM_005354	ENSG00000130522	JUND	AP-1	JunD proto-oncogene, AP-1 transcription factor subunit	protein-coding
74680	chr15	62059711	62061530	+	0	NA	promoter-TSS (NM_018080)	promoter-TSS (NM_018080)	117	NR_135690	101928907		NR_135690		VPS13C-DT	-	VPS13C divergent transcript	ncRNA
132486	chr2	105951021	105951480	+	0	NA	Intergenic	Intergenic	99403	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
123088	chr19	51417351	51417750	+	0	NA	promoter-TSS (NM_001171157)	promoter-TSS (NM_001171157)	92	NM_001171161	89790		NM_033130	ENSG00000142512	SIGLEC10	PRO940|SIGLEC-10|SLG2	sialic acid binding Ig like lectin 10	protein-coding
147954	chr20	62964421	62964880	+	0	NA	intron (NM_022082, intron 8 of 12)	intron (NM_022082, intron 8 of 12)	11941	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
186437	chr5	136036951	136037730	+	0	NA	intron (NM_000358, intron 2 of 16)	intron (NM_000358, intron 2 of 16)	8352	NM_000358	7045		NM_000358	ENSG00000120708	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor beta induced	protein-coding
50669	chr12	48827421	48828500	+	0	NA	3' UTR (NM_001206917, exon 13 of 13)	3' UTR (NM_001206917, exon 13 of 13)	9464	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
226332	chr9	69176171	69176330	+	0	NA	intron (NM_004817, intron 1 of 22)	intron (NM_004817, intron 1 of 22)	1973	NM_004817	9414		NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|FHCA1|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
52244	chr12	54408871	54409830	+	0	NA	exon (NM_002205, exon 4 of 30)	exon (NM_002205, exon 4 of 30)	9916	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
160649	chr3	31572651	31573700	+	0	NA	intron (NM_178862, intron 1 of 15)	L2b|LINE|L2	40250	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
5008	chr1	24419271	24419630	+	0	NA	non-coding (NR_136507, exon 2 of 6)	non-coding (NR_136507, exon 2 of 6)	3425	NM_001322857	57185		NM_020448	ENSG00000001461	NIPAL3	DJ462O23.2|NPAL3|SLC57A5	NIPA like domain containing 3	protein-coding
131242	chr2	95989521	95989780	+	0	NA	intron (NM_001310154, intron 1 of 88)	L1M5|LINE|L1	2174	NM_001310154	400986		NM_001010914	ENSG00000174501	ANKRD36C	-	ankyrin repeat domain 36C	protein-coding
147703	chr20	62352471	62352830	+	0	NA	promoter-TSS (NR_109922)	promoter-TSS (NR_109922)	-360	NR_109923	101928158		NR_109922	ENSG00000228812	LAMA5-AS1	-	LAMA5 antisense RNA 1	ncRNA
186896	chr5	139570421	139570750	+	0	NA	intron (NM_181838, intron 2 of 7)	AluSc8|SINE|Alu	9246	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
239080	chrY	7667971	7668130	+	0	NA	Intergenic	AluYa5|SINE|Alu	33197	NR_001552	252948		NR_001552		TTTY16	NCRNA00139	testis expressed transcript, Y-linked 16	ncRNA
79311	chr16	558851	558950	+	0	NA	Intergenic	Intergenic	-1494	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
36967	chr11	11620371	11620530	+	0	NA	intron (NM_001363464, intron 1 of 9)	intron (NM_001363464, intron 1 of 9)	1555	NM_198516	374378		NM_198516	ENSG00000110328	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
206260	chr7	29289521	29289780	+	0	NA	intron (NM_001293072, intron 1 of 12)	intron (NM_001293072, intron 1 of 12)	-80680	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
207975	chr7	55363051	55363550	+	0	NA	Intergenic	Intergenic	-2037	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
99422	chr17	50097121	50097600	+	0	NA	intron (NM_001199898, intron 2 of 11)	MIR3|SINE|MIR	1665	NM_001199899	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
122876	chr19	50505971	50506130	+	0	NA	TTS (NM_001270639)	TTS (NM_001270639)	5141	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
216052	chr8	10041551	10041920	+	0	NA	Intergenic	Intergenic	-12557	NM_001135670	4482		NM_012331	ENSG00000175806	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
45072	chr11	117065571	117066700	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSz|SINE|Alu	32293	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
153812	chr22	29719851	29720800	+	0	NA	5' UTR (NM_182527, exon 1 of 5)	5' UTR (NM_182527, exon 1 of 5)	322	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
113892	chr19	10679851	10680300	+	0	NA	intron (NM_153464, intron 8 of 17)	intron (NM_153464, intron 8 of 17)	-21364	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
127428	chr2	42135601	42136600	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-33253	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
179421	chr4	184274601	184274800	+	0	NA	Intergenic	Intergenic	-56827	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
139337	chr2	219570571	219570730	+	0	NA	exon (NM_001173408, exon 1 of 9)	exon (NM_001173408, exon 1 of 9)	889	NM_001173408	23363		NM_015311	ENSG00000124006	OBSL1	-	obscurin like cytoskeletal adaptor 1	protein-coding
217799	chr8	33563051	33564350	+	0	NA	intron (NM_024787, intron 1 of 5)	intron (NM_024787, intron 1 of 5)	3428	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
230404	chr9	128112671	128112830	+	0	NA	intron (NR_033374, intron 4 of 4)	AluSq2|SINE|Alu	5984	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
209339	chr7	76238071	76238230	+	0	NA	intron (NM_001291831, intron 2 of 15)	intron (NM_001291831, intron 2 of 15)	36254	NM_001110199	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
3558	chr1	16155721	16156500	+	0	NA	promoter-TSS (NM_001329090)	promoter-TSS (NM_001329090)	-41	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
12778	chr1	109667801	109668480	+	0	NA	promoter-TSS (NM_000848)	promoter-TSS (NM_000848)	83	NM_000848	2946		NM_000848	ENSG00000213366	GSTM2	GST4|GSTM|GSTM2-2|GTHMUS	glutathione S-transferase mu 2	protein-coding
171179	chr3	195669171	195669500	+	0	NA	intron (NR_003265, intron 7 of 14)	L2c|LINE|L2	11296	NR_003265	727956		NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	SDHA pseudogene 2	pseudo
7238	chr1	32339721	32340180	+	0	NA	Intergenic	Intergenic	-3717	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
201944	chr6	151681621	151681880	+	0	NA	intron (NM_001385568, intron 1 of 9)	intron (NM_001385568, intron 1 of 9)	-8777	NM_001122742	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
151365	chr21	45827271	45827830	+	0	NA	TTS (NR_038876)	TTS (NR_038876)	8869	NR_038876	100129027		NR_038876		PCBP3-AS1	-	PCBP3 antisense RNA 1	ncRNA
138943	chr2	218249521	218249780	+	0	NA	intron (NM_152862, intron 9 of 10)	intron (NM_152862, intron 9 of 10)	-9846	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
87514	chr16	71855421	71857450	+	0	NA	3' UTR (NM_001137675, exon 3 of 3)	3' UTR (NM_001137675, exon 3 of 3)	10459	NM_001137675	342371		NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1 like	protein-coding
83716	chr16	28505701	28506500	+	0	NA	intron (NM_145659, intron 1 of 4)	intron (NM_145659, intron 1 of 4)	734	NM_145659	246778		NM_145659	ENSG00000197272	IL27	IL-27|IL-27A|IL27A|IL27p28|IL30|p28	interleukin 27	protein-coding
190740	chr6	389651	390180	+	0	NA	Intergenic	Intergenic	-1837	NR_046000	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
133722	chr2	127379671	127380300	+	0	NA	intron (NM_001371911, intron 1 of 16)	MIR|SINE|MIR	7990	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
21700	chr1	206733051	206733500	+	0	NA	3' UTR (NM_004759, exon 10 of 10)	3' UTR (NM_004759, exon 10 of 10)	37328	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
140917	chr2	237709671	237710230	+	0	NA	intron (NM_001137551, intron 2 of 11)	AluSz|SINE|Alu	17745	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
155626	chr22	38873921	38874450	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1969	NM_014292	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
80875	chr16	3610901	3612500	+	0	NA	promoter-TSS (NM_032444)	promoter-TSS (NM_032444)	-94	NM_032444	84464		NM_032444	ENSG00000188827	SLX4	BTBD12|FANCP|MUS312	SLX4 structure-specific endonuclease subunit	protein-coding
237829	chrX	130028201	130028480	+	0	NA	intron (NM_001379451, intron 7 of 13)	intron (NM_001379451, intron 7 of 13)	45705	NM_021946	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
56861	chr12	120263551	120263750	+	0	NA	intron (NM_001080855, intron 1 of 11)	MIRc|SINE|MIR	2080	NM_002859	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
107827	chr18	54218421	54218850	+	0	NA	intron (NM_003927, intron 1 of 6)	MIR|SINE|MIR	3777	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
115939	chr19	16654221	16654480	+	0	NA	intron (NM_024104, intron 3 of 4)	MLT1K|LTR|ERVL-MaLR	5794	NM_001300925	79086		NM_024104	ENSG00000214046	SMIM7	C19orf42	small integral membrane protein 7	protein-coding
139012	chr2	218377001	218377600	+	0	NA	Intergenic	AluSx|SINE|Alu	-4973	NM_000578	6556		NM_000578	ENSG00000018280	SLC11A1	LSH|NRAMP|NRAMP1	solute carrier family 11 member 1	protein-coding
192091	chr6	16688471	16689330	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	71284	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
52006	chr12	53973221	53973730	+	0	NA	exon (NM_014212, exon 1 of 2)	exon (NM_014212, exon 1 of 2)	349	NM_014212	3227		NM_014212	ENSG00000123388	HOXC11	HOX3H	homeobox C11	protein-coding
36836	chr11	10293351	10294500	+	0	NA	intron (NM_030962, intron 1 of 39)	CpG	282	NM_030962	81846		NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
182859	chr5	69656551	69656750	+	0	NA	intron (NR_027386, intron 3 of 5)	AluY|SINE|Alu	25505	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
106963	chr18	31722401	31722700	+	0	NA	Intergenic	Intergenic	-36507	NM_001378109	9331		NM_004775	ENSG00000118276	B4GALT6	B4Gal-T6|beta4Gal-T6	beta-1,4-galactosyltransferase 6	protein-coding
166184	chr3	111691171	111691580	+	0	NA	intron (NM_153268, intron 1 of 3)	MIR3|SINE|MIR	-13942	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
173546	chr4	10083021	10083600	+	0	NA	intron (NM_017491, intron 9 of 14)	intron (NM_017491, intron 9 of 14)	-4618	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
112640	chr19	6800901	6803450	+	0	NA	intron (NM_005428, intron 1 of 26)	L1PA4|LINE|L1	29467	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
56168	chr12	111411001	111411530	+	0	NA	intron (NM_005475, intron 1 of 7)	AluJb|SINE|Alu	5342	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
72863	chr15	40272471	40273030	+	0	NA	intron (NM_001128628, intron 6 of 10)	intron (NM_001128628, intron 6 of 10)	9836	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
25926	chr10	11328371	11328530	+	0	NA	intron (NM_001326330, intron 12 of 12)	intron (NM_001326330, intron 12 of 12)	16224	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70306	chr14	101813101	101813730	+	0	NA	intron (NM_178587, intron 1 of 11)	MER58A|DNA|hAT-Charlie	3552	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
28903	chr10	63129421	63129680	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3697	NM_001282405	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
212146	chr7	116589021	116589350	+	0	NA	intron (NR_165033, intron 2 of 4)	intron (NR_165033, intron 2 of 4)	25472	NR_120506	100996266		NR_120506		COMETT	COMET|LINC01510	cytosolic oncogenic antisense to MET transcript	ncRNA
159478	chr3	14147651	14148050	+	0	NA	intron (NR_148951, intron 12 of 13)	intron (NR_148951, intron 12 of 13)	22798	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
56400	chr12	113215071	113215230	+	0	NA	intron (NM_138451, intron 1 of 2)	MIRb|SINE|MIR	5944	NM_001330452	115811		NM_138451	ENSG00000166578	IQCD	4933433C09Rik|CFAP84|DRC10	IQ motif containing D	protein-coding
223079	chr8	143405951	143406600	+	0	NA	Intergenic	Intergenic	-11404	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
104741	chr17	81672971	81673300	+	0	NA	3' UTR (NM_199287, exon 6 of 6)	3' UTR (NM_199287, exon 6 of 6)	6398	NM_199287	339230		NM_199287	ENSG00000185298	CCDC137	RaRF	coiled-coil domain containing 137	protein-coding
238240	chrX	142478051	142478400	+	0	NA	Intergenic	L1HS|LINE|L1	-272935	NM_016249	51438		NM_016249	ENSG00000046774	MAGEC2	CT10|HCA587|MAGEE1	MAGE family member C2	protein-coding
163173	chr3	50176601	50176800	+	0	NA	intron (NM_004186, intron 6 of 18)	intron (NM_004186, intron 6 of 18)	-14910	NM_144499	2779		NM_000172	ENSG00000114349	GNAT1	CSNB1G|CSNBAD3|GBT1|GNATR|HG1F	G protein subunit alpha transducin 1	protein-coding
146246	chr20	48846821	48847080	+	0	NA	Intergenic	Intergenic	-18951	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
226017	chr9	41653551	41654480	+	0	NA	Intergenic	Intergenic	6341	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
185457	chr5	131268821	131269150	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluSc|SINE|Alu	4932	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
151443	chr21	46149951	46150250	+	0	NA	intron (NM_206965, intron 7 of 13)	intron (NM_206965, intron 7 of 13)	-1275	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
43081	chr11	74743571	74743930	+	0	NA	Intergenic	Intergenic	-5099	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
225352	chr9	34656751	34657050	+	0	NA	exon (NM_001142784, exon 4 of 13)	exon (NM_001142784, exon 4 of 13)	3003	NR_052010	3590		NM_004512	ENSG00000137070	IL11RA	CRSDA	interleukin 11 receptor subunit alpha	protein-coding
57131	chr12	121220551	121221200	+	0	NA	intron (NM_001261398, intron 2 of 10)	L1MB5|LINE|L1	10746	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
109917	chr19	1295151	1295250	+	0	NA	intron (NM_001405, intron 1 of 3)	intron (NM_001405, intron 1 of 3)	9327	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
55745	chr12	108363451	108363750	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-24289	NM_004072	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
6888	chr1	31423671	31423900	+	0	NA	exon (NM_001199038, exon 3 of 11)	exon (NM_001199038, exon 3 of 11)	9972	NM_018565	347735		NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
38082	chr11	35200251	35200350	+	0	NA	intron (NM_001001389, intron 6 of 16)	intron (NM_001001389, intron 6 of 16)	37350	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
60797	chr13	45326901	45327100	+	0	NA	Intergenic	AluJo|SINE|Alu	9447	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
49599	chr12	27331301	27331730	+	0	NA	Intergenic	Intergenic	-1321	NM_001248003	56938		NM_020183	ENSG00000029153	BMAL2	ARNTL2|CLIF|MOP9|PASD9|bHLHe6	basic helix-loop-helix ARNT like 2	protein-coding
71554	chr14	106308871	106309380	+	0	NA	Intergenic	Intergenic	21451	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
126214	chr2	26847571	26848130	+	0	NA	promoter-TSS (NM_001253723)	promoter-TSS (NM_001253723)	-282	NM_020134	56896		NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|CV2|RTSC4|Ulip6	dihydropyrimidinase like 5	protein-coding
213708	chr7	140227921	140228180	+	0	NA	Intergenic	Intergenic	50789	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
37166	chr11	13883071	13883230	+	0	NA	Intergenic	Intergenic	-12534	NR_149109	105376561		NR_149109	ENSG00000254930	LINC02545	-	long intergenic non-protein coding RNA 2545	ncRNA
195215	chr6	36129771	36131200	+	0	NA	promoter-TSS (NR_072996)	promoter-TSS (NR_072996)	-28	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
215032	chr7	152432951	152433050	+	0	NA	intron (NM_170606, intron 1 of 58)	AluSx|SINE|Alu	3003	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
152916	chr22	22771421	22771880	+	0	NA	Intergenic	Intergenic	-51126	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
112996	chr19	7899071	7899430	+	0	NA	exon (NM_025061, exon 3 of 3)	exon (NM_025061, exon 3 of 3)	-4627	NM_001297556	5609		NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
123972	chr19	55417221	55417480	+	0	NA	Intergenic	AluSx3|SINE|Alu	-9562	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
156025	chr22	39954551	39955550	+	0	NA	intron (NM_001291826, intron 2 of 6)	MARNA|DNA|TcMar-Mariner	8233	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
229063	chr9	114346651	114346950	+	0	NA	intron (NM_001317952, intron 15 of 20)	intron (NM_001317952, intron 15 of 20)	16931	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
191452	chr6	10725551	10725850	+	0	NA	intron (NM_016462, intron 3 of 5).2	intron (NM_016462, intron 3 of 5).2	2630	NM_016462	51522		NM_016462	ENSG00000111843	TMEM14C	C6orf53|HSPC194|MSTP073|NET26|bA421M1.6	transmembrane protein 14C	protein-coding
4857	chr1	23720121	23720750	+	0	NA	Intergenic	Intergenic	-22931	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
169169	chr3	156676871	156678750	+	0	NA	exon (NM_015508, exon 2 of 6)	exon (NM_015508, exon 2 of 6)	1146	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
95893	chr17	38885771	38886730	+	0	NA	intron (NM_001271608, intron 2 of 5)	intron (NM_001271608, intron 2 of 5)	16192	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
230592	chr9	128571201	128571400	+	0	NA	intron (NM_001375310, intron 3 of 57)	AluJb|SINE|Alu	18713	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
87773	chr16	75326401	75326600	+	0	NA	intron (NM_006324, intron 5 of 6)	intron (NM_006324, intron 5 of 6)	-58493	NM_001170715	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
95922	chr17	38918221	38918830	+	0	NA	intron (NM_006148, intron 6 of 6)	intron (NM_006148, intron 6 of 6)	3546	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
57838	chr12	123248571	123249000	+	0	NA	intron (NM_001194995, intron 1 of 2)	LTR12C|LTR|ERV1	15041	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
71042	chr14	104787401	104787680	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	6061	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
92439	chr17	8455571	8455800	+	0	NA	intron (NM_001330129, intron 7 of 7)	AluSx1|SINE|Alu	19801	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
67224	chr14	68950351	68950650	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	28802	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
131340	chr2	96152021	96153580	+	0	NA	Intergenic	L2b|LINE|L2	-7360	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
226230	chr9	66206671	66206830	+	0	NA	Intergenic	Intergenic	-41844	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
180961	chr5	35674001	35674600	+	0	NA	intron (NM_024867, intron 10 of 36)	MLT1A|LTR|ERVL-MaLR	56437	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
131875	chr2	98718021	98719000	+	0	NA	intron (NM_012214, intron 2 of 15)	L1M4b|LINE|L1	12622	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
4555	chr1	22042071	22042230	+	0	NA	Intergenic	AluSx|SINE|Alu	-10559	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
11286	chr1	89200551	89201680	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-2173	NM_052941	115361		NM_052941	ENSG00000162654	GBP4	Mpa2	guanylate binding protein 4	protein-coding
73664	chr15	44724251	44724980	+	0	NA	Intergenic	AluSx3|SINE|Alu	-4373	NR_125376	100419583		NR_125376		LOC100419583	-	ring finger protein 4 pseudogene	pseudo
74814	chr15	63476571	63476930	+	0	NA	Intergenic	Intergenic	-27761	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
171599	chr3	197256901	197257550	+	0	NA	intron (NM_001204386, intron 4 of 24)	intron (NM_001204386, intron 4 of 24)	36723	NR_039960	100616216		NR_039960	ENSG00000265850	MIR4797	-	microRNA 4797	ncRNA
112968	chr19	7857321	7857580	+	0	NA	intron (NM_001159944, intron 12 of 19)	intron (NM_001159944, intron 12 of 19)	16940	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
206362	chr7	30507471	30507630	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-2709	NM_001199816	79017		NM_024051	ENSG00000006625	GGCT	C7orf24|CRF21|GCTG|GGC	gamma-glutamylcyclotransferase	protein-coding
154802	chr22	36887151	36887450	+	0	NA	Intergenic	Intergenic	-16857	NR_147197	107985578		NR_147197	ENSG00000183822	NCF4-AS1	-	NCF4 antisense RNA 1	ncRNA
40428	chr11	64183121	64183700	+	0	NA	Intergenic	MIR|SINE|MIR	-1862	NM_001282652	10963		NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
165152	chr3	72100501	72101580	+	0	NA	promoter-TSS (NR_104116)	promoter-TSS (NR_104116)	-585	NR_104116	285286		NR_104116	ENSG00000241163	LINC00877	-	long intergenic non-protein coding RNA 877	ncRNA
59697	chr13	29587671	29587830	+	0	NA	intron (NM_003045, intron 1 of 12)	intron (NM_003045, intron 1 of 12)	7938	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
217226	chr8	26560351	26560450	+	0	NA	intron (NM_001197293, intron 1 of 13)	LTR84a|LTR|ERVL	-17545	NM_001386	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
39220	chr11	57637971	57639750	+	0	NA	Intergenic	Intergenic	-2338	NR_029673	406919		NR_029673	ENSG00000208009	MIR130A	MIRN130A|miRNA130A|mir-130a	microRNA 130a	ncRNA
100776	chr17	63999721	64000180	+	0	NA	promoter-TSS (NR_126169)	promoter-TSS (NR_126169)	-51	NR_126169	400612		NR_126169	ENSG00000264954	PRR29-AS1	-	PRR29 antisense RNA 1	ncRNA
176336	chr4	88230501	88230950	+	0	NA	intron (NM_001348985, intron 1 of 16)	intron (NM_001348985, intron 1 of 16)	901	NM_001348985	9429		NM_004827	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|CDw388|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1	ATP binding cassette subfamily G member 2 (JR blood group)	protein-coding
175864	chr4	79937871	79938280	+	0	NA	intron (NM_001286781, intron 16 of 16)	L1HS|LINE|L1	110604	NR_026555	118425		NM_058168	ENSG00000251321	PCAT4	GDEP|PCA4|PCAN1	prostate cancer associated transcript 4	ncRNA
137844	chr2	200702601	200704030	+	0	NA	intron (NR_135011, intron 2 of 31)	intron (NR_135011, intron 2 of 31)	7592	NR_135012	107161151		NR_135011		AOX3P-AOX2P	AOX3/AOX3L1	AOX3P-AOX2P readthrough, transcribed pseudogene	pseudo
70937	chr14	104494471	104494630	+	0	NA	Intergenic	L1MB8|LINE|L1	-85214	NM_001286399	400258		NM_001008404	ENSG00000184601	C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
188150	chr5	150412101	150413850	+	0	NA	promoter-TSS (NM_004355)	promoter-TSS (NM_004355)	-39	NM_001025159	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
2898	chr1	11667101	11667500	+	0	NA	intron (NM_018438, intron 1 of 5)	intron (NM_018438, intron 1 of 5)	3100	NM_018438	26270		NM_018438	ENSG00000116663	FBXO6	FBG2|FBS2|FBX6|Fbx6b	F-box protein 6	protein-coding
115751	chr19	16318071	16318680	+	0	NA	Intergenic	Intergenic	-6451	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
125704	chr2	20422951	20423250	+	0	NA	Intergenic	LTR50|LTR|ERVL	-23974	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
8739	chr1	42693851	42694150	+	0	NA	intron (NR_132737, intron 2 of 6)	intron (NR_132737, intron 2 of 6)	10864	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
1015	chr1	1859601	1859850	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	31362	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
196705	chr6	44931771	44931930	+	0	NA	intron (NM_001350324, intron 10 of 11)	intron (NM_001350324, intron 10 of 11)	265920	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
79410	chr16	676801	678000	+	0	NA	intron (NM_001318733, intron 4 of 6)	intron (NM_001318733, intron 4 of 6)	1336	NM_001318733	9028		NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	rhomboid like 1	protein-coding
229369	chr9	121071571	121073030	+	0	NA	intron (NM_001317163, intron 1 of 40)	intron (NM_001317163, intron 1 of 40)	2565	NM_001317163	727		NM_001735	ENSG00000106804	C5	C5D|C5a|C5b|CPAMD4|ECLZB	complement C5	protein-coding
5227	chr1	24994451	24994550	+	0	NA	Intergenic	MIR|SINE|MIR	-29003	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
11073	chr1	85200461	85202430	+	0	NA	promoter-TSS (NM_032184)	promoter-TSS (NM_032184)	-429	NM_032184	84144		NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
107545	chr18	48767271	48767680	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	96875	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
65826	chr14	54889801	54890230	+	0	NA	intron (NM_001024024, intron 1 of 6)	L2|LINE|L2	-11822	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
226384	chr9	70390751	70391250	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	23657	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
14568	chr1	145041571	145041830	+	0	NA	intron (NM_001385227, intron 2 of 8)	L2b|LINE|L2	-52596	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
121618	chr19	47426871	47427700	+	0	NA	TTS (NM_015063)	TTS (NM_015063)	-5052	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
68803	chr14	91244521	91245500	+	0	NA	promoter-TSS (NM_001177676)	promoter-TSS (NM_001177676)	-306	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
128415	chr2	55266121	55266400	+	0	NA	intron (NM_001321002, intron 3 of 15)	AluSz|SINE|Alu	2919	NM_001005369	4528		NM_002453	ENSG00000085760	MTIF2	-	mitochondrial translational initiation factor 2	protein-coding
125953	chr2	25212521	25212780	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	8337	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
114677	chr19	13093601	13094350	+	0	NA	intron (NM_001271043, intron 10 of 10)	intron (NM_001271043, intron 10 of 10)	8883	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
96494	chr17	40303971	40304530	+	0	NA	3' UTR (NM_001254, exon 12 of 12)	3' UTR (NM_001254, exon 12 of 12)	-4930	NM_000964	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
97558	chr17	44082001	44082900	+	0	NA	intron (NM_001382393, intron 20 of 26)	intron (NM_001382393, intron 20 of 26)	11539	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
70455	chr14	102054621	102055080	+	0	NA	3' UTR (NM_001376, exon 78 of 78)	3' UTR (NM_001376, exon 78 of 78)	32194	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
180855	chr5	32595271	32595980	+	0	NA	intron (NM_006713, intron 3 of 4)	L1ME2|LINE|L1	10068	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
101574	chr17	68049771	68050300	+	0	NA	Intergenic	Intergenic	14075	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
149776	chr21	34845501	34846250	+	0	NA	intron (NM_001754, intron 6 of 8)	intron (NM_001754, intron 6 of 8)	42824	NM_001122607	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
148853	chr21	8417921	8419300	+	0	NA	Intergenic	Intergenic	-13920	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
128688	chr2	61527201	61527400	+	0	NA	intron (NM_003400, intron 2 of 24)	AluJr|SINE|Alu	11056	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
121485	chr19	47127771	47127930	+	0	NA	Intergenic	AluSx|SINE|Alu	-2985	NM_001145713	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
64233	chr14	23083571	23083930	+	0	NA	intron (NM_001164815, intron 3 of 17)	intron (NM_001164815, intron 3 of 17)	-11755	NM_017924	55017		NM_017924	ENSG00000179933	C14orf119	-	chromosome 14 open reading frame 119	protein-coding
35605	chr11	1759821	1760680	+	0	NA	intron (NM_001909, intron 2 of 8)	intron (NM_001909, intron 2 of 8)	3677	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
238573	chrX	153827801	153828030	+	0	NA	intron (NM_032512, intron 1 of 7)	intron (NM_032512, intron 1 of 7)	2044	NM_001303516	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
223373	chr8	143881851	143882400	+	0	NA	Intergenic	Intergenic	-3658	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
74037	chr15	52263571	52263950	+	0	NA	intron (NM_018728, intron 9 of 40)	L2a|LINE|L2	13440	NR_031670	100302202		NR_031670	ENSG00000221052	MIR1266	MIRN1266|hsa-mir-1266|mir-1266	microRNA 1266	ncRNA
125603	chr2	17830571	17830800	+	0	NA	Intergenic	Intergenic	14225	NM_001105569	343930		NM_001105569	ENSG00000151379	MSGN1	MSOG|pMsgn1	mesogenin 1	protein-coding
218521	chr8	53766871	53767550	+	0	NA	intron (NM_213620, intron 11 of 13)	L1MC2|LINE|L1	75832	NM_213620	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
108020	chr18	58763671	58764610	+	0	NA	Intergenic	AluSz|SINE|Alu	-49740	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
67712	chr14	73455871	73456350	+	0	NA	intron (NM_003744, intron 1 of 11)	intron (NM_003744, intron 1 of 11)	2470	NM_003744	8650		NM_003744	ENSG00000133961	NUMB	C14orf41|S171|c14_5527	NUMB endocytic adaptor protein	protein-coding
14739	chr1	145991351	145992180	+	0	NA	TTS (NM_006472)	TTS (NM_006472)	3979	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
187662	chr5	143188751	143188850	+	0	NA	intron (NM_001349547, intron 20 of 21)	intron (NM_001349547, intron 20 of 21)	-3700	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
30624	chr10	80254271	80254430	+	0	NA	non-coding (NR_136612, exon 6 of 6)	non-coding (NR_136612, exon 6 of 6)	6592	NR_136612	100130698		NR_136612		LOC100130698	-	uncharacterized LOC100130698	ncRNA
235906	chrX	53071671	53072680	+	0	NA	intron (NM_018969, intron 1 of 1)	intron (NM_018969, intron 1 of 1)	-10192	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
176491	chr4	90681101	90681300	+	0	NA	intron (NM_207491, intron 6 of 7)	L1HS|LINE|L1	446169	NM_207491	401145		NM_207491	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine rich protein 1	protein-coding
84422	chr16	30373821	30374230	+	0	NA	promoter-TSS (NM_013292)	promoter-TSS (NM_013292)	-777	NM_013292	29895		NM_013292	ENSG00000180209	MYL11	DA1C|HUMMLC2B|MLC2B|MRLC2|MYLPF	myosin light chain 11	protein-coding
169237	chr3	157143251	157144350	+	0	NA	3' UTR (NM_001308185, exon 11 of 11)	3' UTR (NM_001308185, exon 11 of 11)	16347	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
199314	chr6	112253701	112254350	+	0	NA	exon (NM_001105209, exon 2 of 2)	exon (NM_001105209, exon 2 of 2)	542	NM_002290	3910		NM_002290	ENSG00000112769	LAMA4	CMD1JJ|LAMA3|LAMA4*-1	laminin subunit alpha 4	protein-coding
103594	chr17	78713571	78713730	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	3382	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
54062	chr12	76025671	76026030	+	0	NA	3' UTR (NM_007350, exon 2 of 2)	3' UTR (NM_007350, exon 2 of 2)	5926	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
20519	chr1	198677271	198677650	+	0	NA	intron (NM_002838, intron 2 of 32)	L2c|LINE|L2	38420	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
102745	chr17	76261451	76262300	+	0	NA	Intergenic	Intergenic	-3473	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
221393	chr8	123434751	123434850	+	0	NA	intron (NR_133926, intron 3 of 6)	intron (NR_133926, intron 3 of 6)	18026	NM_018024	55093		NM_018024	ENSG00000156795	NTAQ1	C8orf32|WDYHV1	N-terminal glutamine amidase 1	protein-coding
57720	chr12	122875501	122876080	+	0	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	20334	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
217077	chr8	23702451	23703080	+	0	NA	exon (NM_001136271, exon 2 of 2)	exon (NM_001136271, exon 2 of 2)	3991	NM_001136271	137814		NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
168927	chr3	152353471	152353700	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-12595	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
135150	chr2	157468901	157470130	+	0	NA	Intergenic	Intergenic	-25426	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
227405	chr9	89536051	89537350	+	0	NA	Intergenic	Intergenic	-38587	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
189826	chr5	177081771	177082330	+	0	NA	TTS (NM_001363713)	TTS (NM_001363713)	-4865	NM_001354984	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
200623	chr6	136787401	136788980	+	0	NA	intron (NM_005923, intron 1 of 29)	L1P4|LINE|L1	4143	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
126800	chr2	30365371	30365530	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	18804	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
235656	chrX	48530301	48530730	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	8707	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
157859	chr22	48913151	48913250	+	0	NA	Intergenic	L1ME2|LINE|L1	46430	NR_038944	100128946		NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA
120272	chr19	42923251	42923350	+	0	NA	TTS (NM_002783)	TTS (NM_002783)	-5406	NM_001031850	5675		NM_002782	ENSG00000170848	PSG6	PSBG-10|PSBG-12|PSBG-6|PSG10|PSGGB	pregnancy specific beta-1-glycoprotein 6	protein-coding
1172	chr1	2220401	2221200	+	0	NA	Intergenic	L1MC4|LINE|L1	-7519	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
176760	chr4	102342371	102342930	+	0	NA	intron (NM_022154, intron 1 of 7)	intron (NM_022154, intron 1 of 7)	2541	NM_022154	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
49825	chr12	32108701	32109180	+	0	NA	intron (NR_148725, intron 1 of 9)	intron (NR_148725, intron 1 of 9)	2093	NR_148725	636		NM_001714	ENSG00000151746	BICD1	BICD|bic-D 1	BICD cargo adaptor 1	protein-coding
179563	chr4	185202121	185202900	+	0	NA	intron (NM_020827, intron 1 of 4)	AluJb|SINE|Alu	1490	NM_020827	57587		NM_020827	ENSG00000164323	CFAP97	KIAA1430|hmw	cilia and flagella associated protein 97	protein-coding
194095	chr6	31906121	31906680	+	0	NA	intron (NM_001178063, intron 1 of 13).5	intron (NM_001178063, intron 1 of 13).5	-4314	NM_181842	221527		NM_181842	ENSG00000204366	ZBTB12	Bat9|C6orf46|D6S59E|G10|NG35	zinc finger and BTB domain containing 12	protein-coding
161342	chr3	40290351	40291050	+	0	NA	intron (NR_033965, intron 2 of 2)	LTR27E|LTR|ERV1	18998	NR_033965	440952		NR_033965	ENSG00000280739	EIF1B-AS1	-	EIF1B antisense RNA 1	ncRNA
195493	chr6	37167101	37167600	+	0	NA	Intergenic	MIR|SINE|MIR	-2802	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
201526	chr6	149132371	149132730	+	0	NA	Intergenic	Intergenic	-85374	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
146279	chr20	49100771	49101650	+	0	NA	Intergenic	Intergenic	54898	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
18618	chr1	165871151	165871650	+	0	NA	intron (NM_012474, intron 1 of 6)	intron (NM_012474, intron 1 of 6)	-36521	NR_037431	100500832		NR_037431	ENSG00000283936	MIR3658	-	microRNA 3658	ncRNA
236055	chrX	56314401	56314700	+	0	NA	Intergenic	Intergenic	81392	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
63503	chr13	114227751	114228200	+	0	NA	Intergenic	Intergenic	-6870	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
66887	chr14	65134721	65135180	+	0	NA	Intergenic	Intergenic	-32255	NR_073138	4149		NM_002382	ENSG00000125952	MAX	PDMCS|bHLHd4	MYC associated factor X	protein-coding
86305	chr16	58684151	58685100	+	0	NA	promoter-TSS (NM_001308384)	promoter-TSS (NM_001308384)	145	NM_001369609	55238		NM_018231	ENSG00000103042	SLC38A7	SNAT7	solute carrier family 38 member 7	protein-coding
143217	chr20	24965271	24966350	+	0	NA	intron (NM_020531, intron 8 of 8)	L1MC4|LINE|L1	16541	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
232448	chr9	136120571	136120930	+	0	NA	TTS (NR_165241)	TTS (NR_165241)	1730	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
223046	chr8	143371901	143372680	+	0	NA	intron (NM_052924, intron 1 of 14)	intron (NM_052924, intron 1 of 14)	3414	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
45194	chr11	117492651	117492750	+	0	NA	intron (NM_020693, intron 11 of 32)	intron (NM_020693, intron 11 of 32)	164846	NM_014956	22897		NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
212179	chr7	116984751	116985050	+	0	NA	intron (NR_161422, intron 1 of 14)	intron (NR_161422, intron 1 of 14)	-30012	NM_001369602	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
50962	chr12	49546471	49546880	+	0	NA	intron (NM_001314030, intron 7 of 14)	intron (NM_001314030, intron 7 of 14)	7645	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
111245	chr19	3521901	3522100	+	0	NA	promoter-TSS (NM_001136197)	promoter-TSS (NM_001136197)	-956	NM_001136197	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
79151	chr16	271301	271700	+	0	NA	intron (NM_183337, intron 10 of 16)	intron (NM_183337, intron 10 of 16)	4444	NM_183337	8786		NM_003834	ENSG00000076344	RGS11	RS11	regulator of G protein signaling 11	protein-coding
184969	chr5	113487301	113487680	+	0	NA	intron (NM_001085377, intron 1 of 18)	intron (NM_001085377, intron 1 of 18)	963	NM_001085377	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
5275	chr1	25065501	25067300	+	0	NA	Intergenic	Intergenic	42897	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
173579	chr4	10123771	10124430	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7301	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
187916	chr5	148848171	148849000	+	0	NA	Intergenic	MIR3|SINE|MIR	21974	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
105848	chr18	3011321	3012000	+	0	NA	intron (NM_001375808, intron 1 of 19)	AluSx|SINE|Alu	287	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
46577	chr11	128505521	128506030	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	16535	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
10594	chr1	67425221	67425480	+	0	NA	intron (NM_001018067, intron 2 of 7)	intron (NM_001018067, intron 2 of 7)	5052	NM_001018067	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
176517	chr4	94913101	94913580	+	0	NA	intron (NM_001203, intron 2 of 12)	intron (NM_001203, intron 2 of 12)	-82892	NM_001256792	658		NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMD3|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
76876	chr15	77974021	77974280	+	0	NA	Intergenic	Intergenic	20075	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
40646	chr11	64728371	64729000	+	0	NA	intron (NM_001098670, intron 15 of 16)	AluY|SINE|Alu	-5488	NM_001376267	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
191920	chr6	15491221	15491980	+	0	NA	intron (NM_001267040, intron 6 of 17)	intron (NM_001267040, intron 6 of 17)	171428	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
79858	chr16	1488301	1488500	+	0	NA	promoter-TSS (NM_001013658)	promoter-TSS (NM_001013658)	67	NM_001013658	390667		NM_001013658	ENSG00000251692	PTX4	C16orf38	pentraxin 4	protein-coding
65051	chr14	39234351	39234650	+	0	NA	intron (NM_054024, intron 1 of 5)	intron (NM_054024, intron 1 of 5)	585	NM_054024	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
61059	chr13	48256151	48256250	+	0	NA	exon (NM_021999, exon 3 of 6)	exon (NM_021999, exon 3 of 6)	22994	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
178642	chr4	152369271	152369430	+	0	NA	intron (NM_033632, intron 2 of 11)	MIR|SINE|MIR	13179	NM_001013415	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
117274	chr19	19468421	19468850	+	0	NA	intron (NM_001384541, intron 2 of 10)	L1M4a2|LINE|L1	33572	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
200724	chr6	137666001	137667130	+	0	NA	intron (NR_125867, intron 1 of 3)	intron (NR_125867, intron 1 of 3)	919	NR_125867	102723649		NR_125867	ENSG00000230533	LINC03004	-	long intergenic non-protein coding RNA 3004	ncRNA
58245	chr12	128782371	128783800	+	0	NA	Intergenic	AluSz|SINE|Alu	40873	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
85162	chr16	46624421	46625100	+	0	NA	Intergenic	Intergenic	-3381	NM_001324318	79801		NM_024745	ENSG00000171241	SHCBP1	PAL	SHC binding and spindle associated 1	protein-coding
133895	chr2	130155451	130155550	+	0	NA	intron (NM_017951, intron 14 of 19)	intron (NM_017951, intron 14 of 19)	-10388	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
82050	chr16	12613451	12613750	+	0	NA	Intergenic	Intergenic	-106721	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
7119	chr1	32173671	32173830	+	0	NA	3' UTR (NM_012316, exon 14 of 14)	3' UTR (NM_012316, exon 14 of 14)	-5925	NM_175852	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
193629	chr6	30786501	30787200	+	0	NA	intron (NR_138037, intron 1 of 3)	FLAM_C|SINE|Alu	20025	NR_138037	105375013		NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20	ncRNA
2556	chr1	9739571	9739930	+	0	NA	intron (NM_014944, intron 9 of 17)	intron (NM_014944, intron 9 of 17)	48283	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
121992	chr19	48511401	48512750	+	0	NA	intron (NM_001080434, intron 1 of 15)	intron (NM_001080434, intron 1 of 15)	1114	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
64315	chr14	23578101	23578350	+	0	NA	5' UTR (NM_032452, exon 1 of 7)	5' UTR (NM_032452, exon 1 of 7)	565	NM_001146028	84502		NM_032452	ENSG00000092051	JPH4	JP4|JPHL1	junctophilin 4	protein-coding
34077	chr10	125015171	125015730	+	0	NA	intron (NM_001083914, intron 3 of 10)	intron (NM_001083914, intron 3 of 10)	-9432	NM_001363508	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
210175	chr7	98504151	98504450	+	0	NA	Intergenic	Intergenic	-103210	NM_018842	55971		NM_018842	ENSG00000006453	BAIAP2L1	IRTKS	BAR/IMD domain containing adaptor protein 2 like 1	protein-coding
149749	chr21	34589871	34590200	+	0	NA	intron (NM_004414, intron 1 of 3)	L2a|LINE|L2	23808	NM_001285389	1827		NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
68071	chr14	75266301	75266980	+	0	NA	Intergenic	Intergenic	-12188	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
56679	chr12	120007071	120008650	+	0	NA	intron (NR_147894, intron 3 of 8)	intron (NR_147894, intron 3 of 8)	18016	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
89478	chr16	89113001	89113230	+	0	NA	intron (NR_147929, intron 5 of 9)	intron (NR_147929, intron 5 of 9)	19263	NM_001284316	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
42545	chr11	71640301	71640500	+	0	NA	Intergenic	Intergenic	-57525	NM_001005405	440051		NM_001005405	ENSG00000204571	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
26987	chr10	26781401	26781600	+	0	NA	intron (NR_145410, intron 2 of 11)	HERVL40-int|LTR|ERVL	79458	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
169010	chr3	152438871	152439030	+	0	NA	intron (NM_207296, intron 4 of 8)	intron (NM_207296, intron 4 of 8)	-97960	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
128293	chr2	54604801	54605580	+	0	NA	intron (NM_178313, intron 2 of 30)	intron (NM_178313, intron 2 of 30)	46796	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
119154	chr19	39388021	39389850	+	0	NA	intron (NR_046384, intron 7 of 13)	intron (NR_046384, intron 7 of 13)	2171	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
208459	chr7	66983171	66983530	+	0	NA	Intergenic	AluSx1|SINE|Alu	12236	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
198538	chr6	106548051	106548700	+	0	NA	intron (NM_001371242, intron 13 of 21)	intron (NM_001371242, intron 13 of 21)	36520	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
129101	chr2	65124621	65124880	+	0	NA	intron (NM_004161, intron 1 of 5)	intron (NM_004161, intron 1 of 5)	5356	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
138457	chr2	206260301	206260600	+	0	NA	intron (NR_104359, intron 5 of 5).2	intron (NR_104359, intron 5 of 5).2	-14213	NM_020923	57683		NM_020923	ENSG00000204186	ZDBF2	Slx9	zinc finger DBF-type containing 2	protein-coding
87253	chr16	69769801	69770030	+	0	NA	intron (NM_001270455, intron 1 of 8)	AluSz6|SINE|Alu	7583	NM_001270454	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
177108	chr4	108086901	108087100	+	0	NA	intron (NM_016269, intron 4 of 11)	MamSINE1|SINE|tRNA-RTE	79797	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
86456	chr16	66931951	66932050	+	0	NA	TTS (NM_016062)	TTS (NM_016062)	2402	NR_024525	51647		NM_016062	ENSG00000166595	CIAO2B	CGI-128|CIA2B|FAM96B|MIP18	cytosolic iron-sulfur assembly component 2B	protein-coding
83798	chr16	28806421	28806680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-16498	NM_148414	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
163720	chr3	52301051	52301350	+	0	NA	Intergenic	Intergenic	-6892	NR_029677	406925		NR_029677	ENSG00000207926	MIR135A1	MIRN135-1|MIRN135A1|mir-135a-1	microRNA 135a-1	ncRNA
11108	chr1	86380171	86380650	+	0	NA	intron (NM_020729, intron 7 of 17)	intron (NM_020729, intron 7 of 17)	15651	NM_001366784	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
161193	chr3	39142201	39142650	+	0	NA	3' UTR (NM_001320560, exon 5 of 5)	3' UTR (NM_001320560, exon 5 of 5)	4219	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
6358	chr1	27826151	27826850	+	0	NA	Intergenic	Intergenic	-4282	NM_014110	5511		NM_002713	ENSG00000117751	PPP1R8	ARD-1|ARD1|NIPP-1|NIPP1|PRO2047	protein phosphatase 1 regulatory subunit 8	protein-coding
183261	chr5	76432121	76432800	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	29175	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
221099	chr8	117628351	117628450	+	0	NA	Intergenic	Intergenic	107687	NM_080651	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
152662	chr22	21575751	21576150	+	0	NA	intron (NR_046082, intron 1 of 3)	intron (NR_046082, intron 1 of 3)	8236	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
153031	chr22	23244751	23245700	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-17542	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
11460	chr1	89906671	89906830	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	84811	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
90207	chr17	489011	489400	+	0	NA	Intergenic	Intergenic	-43265	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
30977	chr10	87928851	87929350	+	0	NA	intron (NM_001304717, intron 4 of 9)	MIRb|SINE|MIR	65475	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
153304	chr22	24183571	24184000	+	0	NA	intron (NM_019601, intron 3 of 14)	intron (NM_019601, intron 3 of 14)	2298	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
98914	chr17	48602351	48603250	+	0	NA	TTS (NR_110330)	TTS (NR_110330)	2186	NM_001369397	3216		NM_018952	ENSG00000108511	HOXB6	HOX2|HOX2B|HU-2|Hox-2.2	homeobox B6	protein-coding
230747	chr9	128884701	128885280	+	0	NA	intron (NM_001127244, intron 1 of 3)	intron (NM_001127244, intron 1 of 3)	-2467	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
107321	chr18	45197501	45197700	+	0	NA	intron (NM_001371319, intron 3 of 23)	intron (NM_001371319, intron 3 of 23)	-15395	NM_001242692	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
100749	chr17	63946051	63947380	+	0	NA	intron (NM_000334, intron 18 of 23)	intron (NM_000334, intron 18 of 23)	-14384	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
104412	chr17	81058121	81058700	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	676	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
218870	chr8	60526471	60526630	+	0	NA	intron (NM_001242644, intron 1 of 6)	MLT1E2|LTR|ERVL-MaLR	9563	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
216556	chr8	21902921	21903300	+	0	NA	Intergenic	Intergenic	10580	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
221142	chr8	119497221	119497650	+	0	NA	Intergenic	Intergenic	80989	NM_002514	4856		NM_002514	ENSG00000136999	CCN3	IBP-9|IGFBP-9|IGFBP9|NOV|NOVh	cellular communication network factor 3	protein-coding
114858	chr19	13857971	13858830	+	0	NA	Intergenic	AluSx|SINE|Alu	-3636	NR_146095	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
199087	chr6	111663551	111663650	+	0	NA	intron (NM_001370529, intron 11 of 11)	X7C_LINE|LINE|CR1	-57326	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
218345	chr8	42918971	42919530	+	0	NA	intron (NM_032410, intron 2 of 21)	SVA_C|Retroposon|SVA	22272	NM_032410	84376		NM_032410	ENSG00000168172	HOOK3	HK3	hook microtubule tethering protein 3	protein-coding
4387	chr1	20785701	20786900	+	0	NA	5' UTR (NM_001376788, exon 1 of 13)	5' UTR (NM_001376788, exon 1 of 13)	352	NM_001376789	50809		NM_016287	ENSG00000127483	HP1BP3	HP1-BP74|HP1BP74	heterochromatin protein 1 binding protein 3	protein-coding
11495	chr1	90837401	90838030	+	0	NA	non-coding (NR_147931, exon 2 of 3)	non-coding (NR_147931, exon 2 of 3)	-1554	NR_147932	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
15809	chr1	151291951	151292250	+	0	NA	TTS (NM_001304764)	TTS (NM_001304764)	9801	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
11801	chr1	92623151	92623550	+	0	NA	intron (NM_001350197, intron 16 of 19)	intron (NM_001350197, intron 16 of 19)	-136425	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
143030	chr20	21104471	21104630	+	0	NA	intron (NR_147212, intron 1 of 2)	intron (NR_147212, intron 1 of 2)	1808	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
5746	chr1	26474721	26475250	+	0	NA	intron (NM_005517, intron 5 of 5)	MIR1_Amn|SINE|MIR	2545	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
8702	chr1	42221951	42222250	+	0	NA	intron (NM_001198850, intron 5 of 12)	(AGA)n|Simple_repeat|Simple_repeat	-57355	NM_033553	2980		NM_033553	ENSG00000197273	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A	protein-coding
209116	chr7	74964221	74966100	+	0	NA	intron (NM_001145064, intron 1 of 8)	CpG	455	NM_001145064	729438		NM_001145064	ENSG00000274070	CASTOR2	GATSL1|GATSL2	cytosolic arginine sensor for mTORC1 subunit 2	protein-coding
12342	chr1	101120971	101121600	+	0	NA	Intergenic	Intergenic	95439	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
117992	chr19	33771551	33771950	+	0	NA	intron (NM_001127895, intron 4 of 4)	intron (NM_001127895, intron 4 of 4)	-25120	NM_001129995	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
157912	chr22	49772621	49773430	+	0	NA	TTS (NM_001349942)	TTS (NM_001349942)	51306	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
59898	chr13	30742251	30742550	+	0	NA	intron (NM_001629, intron 1 of 4)	intron (NM_001629, intron 1 of 4)	6857	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
109610	chr19	937151	938030	+	0	NA	intron (NM_005224, intron 3 of 8)	L1MB7|LINE|L1	11555	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
181131	chr5	37793151	37793250	+	0	NA	Intergenic	Intergenic	41622	NM_001278098	2668		NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
53210	chr12	62273851	62273950	+	0	NA	intron (NM_001351164, intron 1 of 21)	intron (NM_001351164, intron 1 of 21)	13496	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
146297	chr20	49154221	49154680	+	0	NA	intron (NM_017454, intron 1 of 11)	intron (NM_017454, intron 1 of 11)	33884	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
2283	chr1	8950201	8950400	+	0	NA	intron (NM_001215, intron 2 of 7)	intron (NM_001215, intron 2 of 7)	4432	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
2335	chr1	9201521	9202100	+	0	NA	Intergenic	(CCT)n|Simple_repeat|Simple_repeat	-19472	NR_132742	106614088		NR_132742	ENSG00000228526	MIR34AHG	lnc34a	MIR34A host gene	ncRNA
123788	chr19	55135701	55135900	+	0	NA	intron (NM_003283, intron 11 of 13)	AluSq2|SINE|Alu	-12508	NR_107015	102466872		NR_107015	ENSG00000275863	MIR7975	hsa-mir-7975	microRNA 7975	ncRNA
47768	chr12	6549401	6549600	+	0	NA	intron (NM_001039670, intron 4 of 9)	GA-rich|Low_complexity|Low_complexity	6542	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
7279	chr1	32377101	32377500	+	0	NA	intron (NM_018045, intron 8 of 10)	MIRb|SINE|MIR	14761	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
157283	chr22	44182401	44183700	+	0	NA	intron (NM_022141, intron 2 of 13)	intron (NM_022141, intron 2 of 13)	2125	NM_022141	64098		NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding
83433	chr16	27281071	27282030	+	0	NA	non-coding (NR_037184, exon 2 of 5)	non-coding (NR_037184, exon 2 of 5)	-12778	NM_145080	197370		NM_145080	ENSG00000169189	NSMCE1	NSE1	NSE1 homolog, SMC5-SMC6 complex component	protein-coding
212197	chr7	117127551	117127850	+	0	NA	intron (NM_001369606, intron 4 of 16)	intron (NM_001369606, intron 4 of 16)	17892	NR_002331	93654		NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
220144	chr8	94928901	94929250	+	0	NA	3' UTR (NM_001135733, exon 5 of 5)	3' UTR (NM_001135733, exon 5 of 5)	20303	NM_001135733	94241		NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
173597	chr4	10554721	10555000	+	0	NA	intron (NM_052964, intron 8 of 18)	intron (NM_052964, intron 8 of 18)	-97434	NM_001375817	85460		NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
59191	chr13	22082551	22083050	+	0	NA	Intergenic	Intergenic	-127485	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
203875	chr7	1475071	1475430	+	0	NA	intron (NM_001080453, intron 39 of 47)	AluJb|SINE|Alu	-15780	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
237410	chrX	119613971	119614350	+	0	NA	Intergenic	Intergenic	-7736	NR_163972	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
203340	chr6	170273401	170273780	+	0	NA	non-coding (NR_104177, exon 1 of 2)	non-coding (NR_104177, exon 1 of 2)	1116	NR_104177	401289		NR_104177		LINC01624	-	long intergenic non-protein coding RNA 1624	ncRNA
136815	chr2	181891171	181892930	+	0	NA	non-coding (NR_109843, exon 1 of 18)	non-coding (NR_109843, exon 1 of 18)	320	NM_006751	6744		NM_006751	ENSG00000138434	ITPRID2	CS-1|CS1|KRAP|SPAG13|SSFA2	ITPR interacting domain containing 2	protein-coding
38553	chr11	45917251	45919730	+	0	NA	promoter-TSS (NM_004813)	promoter-TSS (NM_004813)	-613	NM_004813	9409		NM_004813	ENSG00000121680	PEX16	PBD8A|PBD8B	peroxisomal biogenesis factor 16	protein-coding
47539	chr12	4280351	4280700	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-4341	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
190040	chr5	177516451	177517630	+	0	NA	promoter-TSS (NM_001321830)	promoter-TSS (NM_001321830)	-79	NM_016222	51428		NM_016222	ENSG00000183258	DDX41	ABS|MPLPF	DEAD-box helicase 41	protein-coding
105361	chr17	82645751	82646300	+	0	NA	intron (NM_019613, intron 1 of 9)	AluSg4|SINE|Alu	2419	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
122125	chr19	48821651	48821750	+	0	NA	intron (NM_016246, intron 5 of 8)	intron (NM_016246, intron 5 of 8)	-10671	NM_001190	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
159822	chr3	16386651	16387130	+	0	NA	intron (NM_015150, intron 4 of 9)	intron (NM_015150, intron 4 of 9)	121678	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
140610	chr2	233416301	233416700	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	-2712	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
173411	chr4	8155821	8156280	+	0	NA	intron (NM_001130086, intron 1 of 17)	intron (NM_001130086, intron 1 of 17)	2763	NM_001130085	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
120994	chr19	45766121	45766380	+	0	NA	intron (NM_175875, intron 2 of 2)	intron (NM_175875, intron 2 of 2)	-1546	NR_147193	109729182		NR_147193	ENSG00000267395	DM1-AS	-	DM1 locus antisense RNA	ncRNA
106514	chr18	21073071	21073480	+	0	NA	intron (NM_005406, intron 1 of 32)	intron (NM_005406, intron 1 of 32)	38538	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
192873	chr6	27388471	27389350	+	0	NA	5' UTR (NM_001076781, exon 1 of 3)	5' UTR (NM_001076781, exon 1 of 3)	192	NM_001322293	346157		NM_001013719	ENSG00000124613	ZNF391	dJ153G14.3	zinc finger protein 391	protein-coding
12708	chr1	109497821	109498650	+	0	NA	3' UTR (NM_001134400, exon 3 of 3)	3' UTR (NM_001134400, exon 3 of 3)	4141	NM_182580	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
185400	chr5	128777101	128777350	+	0	NA	Intergenic	L2a|LINE|L2	-187902	NM_014031	28965		NM_014031	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	solute carrier family 27 member 6	protein-coding
9576	chr1	51877921	51879620	+	0	NA	promoter-TSS (NM_001101662)	promoter-TSS (NM_001101662)	-43	NM_001101662	4898		NM_002525	ENSG00000078618	NRDC	NRD1|hNRD1|hNRD2	nardilysin convertase	protein-coding
143854	chr20	32532201	32532630	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	22456	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
217099	chr8	24454301	24454530	+	0	NA	intron (NM_003817, intron 3 of 21)	L1PA3|LINE|L1	13389	NM_003817	8756		NM_003817	ENSG00000069206	ADAM7	ADAM 7|ADAM-7|EAPI|GP-83|GP83	ADAM metallopeptidase domain 7	protein-coding
13517	chr1	114755251	114755350	+	0	NA	intron (NM_001242891, intron 1 of 20)	intron (NM_001242891, intron 1 of 20)	2684	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
228374	chr9	99108151	99108250	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	3087	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233574	chrX	301121	301550	+	0	NA	3' UTR (NM_018390, exon 7 of 7)	3' UTR (NM_018390, exon 7 of 7)	17484	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
216752	chr8	22466221	22466980	+	0	NA	intron (NM_005605, intron 1 of 13)	L1PA6|LINE|L1	25522	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
79912	chr16	1705321	1707650	+	0	NA	exon (NM_001040439, exon 1 of 31)	exon (NM_001040439, exon 1 of 31)	290	NM_001040439	23162		NM_015133	ENSG00000138834	MAPK8IP3	JIP-3|JIP3|JSAP1|NEDBA|SYD2|syd	mitogen-activated protein kinase 8 interacting protein 3	protein-coding
45002	chr11	116992521	116992930	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJb|SINE|Alu	105703	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
168402	chr3	142222601	142223000	+	0	NA	intron (NM_001039547, intron 1 of 15)	MER5C|DNA|hAT-Charlie	2785	NR_033289	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
112947	chr19	7731451	7731750	+	0	NA	intron (NM_198492, intron 2 of 8)	intron (NM_198492, intron 2 of 8)	571	NM_198492	339390		NM_198492	ENSG00000182566	CLEC4G	DTTR431|LP2698|LSECtin|UNQ431	C-type lectin domain family 4 member G	protein-coding
96267	chr17	39858101	39858850	+	0	NA	intron (NM_183231, intron 1 of 5)	intron (NM_183231, intron 1 of 5)	5713	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
46731	chr11	128917771	128918330	+	0	NA	3' UTR (NM_000890, exon 3 of 3)	3' UTR (NM_000890, exon 3 of 3)	-11819	NR_045767	219833		NM_145013	ENSG00000174370	KCNJ5-AS1	C11orf45	KCNJ5 antisense RNA 1	ncRNA
182698	chr5	68220171	68220530	+	0	NA	intron (NM_181523, intron 1 of 15)	intron (NM_181523, intron 1 of 15)	4594	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
150611	chr21	43369201	43369700	+	0	NA	Intergenic	Intergenic	-7101	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
217142	chr8	25475701	25475900	+	0	NA	intron (NM_152562, intron 7 of 14)	L1M3b|LINE|L1	16567	NM_152562	157313		NM_152562	ENSG00000184661	CDCA2	PPP1R81|Repo-Man	cell division cycle associated 2	protein-coding
110691	chr19	2284051	2284350	+	0	NA	Intergenic	Intergenic	-2025	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
236583	chrX	72943701	72944550	+	0	NA	promoter-TSS (NR_026594).2	promoter-TSS (NR_026594).2	-375	NR_026595	203429		NM_152693		FAM226A	CXorf50|LINC00246A|NCRNA00246|NCRNA00246A	family with sequence similarity 226 member A	ncRNA
147003	chr20	53570401	53571000	+	0	NA	intron (NR_110051, intron 4 of 5)	intron (NR_110051, intron 4 of 5)	17930	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
61985	chr13	80334801	80335000	+	0	NA	Intergenic	Intergenic	4759	NM_001318537	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
126678	chr2	29802351	29802530	+	0	NA	intron (NM_004304, intron 1 of 28)	(AGGGG)n|Simple_repeat|Simple_repeat	119146	NM_004304	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
151833	chr22	18430321	18430850	+	0	NA	intron (NR_136560, intron 4 of 11)	intron (NR_136560, intron 4 of 11)	8341	NR_136560	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
120129	chr19	42203351	42203450	+	0	NA	intron (NR_073049, intron 3 of 4)	L2c|LINE|L2	14277	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
168174	chr3	140463151	140463450	+	0	NA	intron (NM_022131, intron 7 of 16)	intron (NM_022131, intron 7 of 16)	45489	NR_108084	101927808		NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
209733	chr7	87159821	87160080	+	0	NA	intron (NM_021145, intron 3 of 19)	Tigger3a|DNA|TcMar-Tigger	7396	NM_021145	9988		NM_021145	ENSG00000135164	DMTF1	DMP1|DMTF|MRUL|hDMP1	cyclin D binding myb like transcription factor 1	protein-coding
221077	chr8	116889971	116890330	+	0	NA	Intergenic	Intergenic	-15350	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
217393	chr8	28324251	28324980	+	0	NA	intron (NM_006228, intron 1 of 3)	AluSq|SINE|Alu	7347	NM_006228	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
116031	chr19	17180001	17180830	+	0	NA	intron (NM_004145, intron 14 of 39)	AluSx1|SINE|Alu	-34942	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
206530	chr7	35034701	35035180	+	0	NA	intron (NM_015283, intron 1 of 21)	intron (NM_015283, intron 1 of 21)	2545	NM_001366673	23333		NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like C-mannosyltransferase 1	protein-coding
214018	chr7	143261951	143262330	+	0	NA	intron (NR_133932, intron 2 of 2)	MIR|SINE|MIR	-1289	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
116304	chr19	17779621	17780450	+	0	NA	intron (NR_169234, intron 20 of 28)	intron (NR_169234, intron 20 of 28)	-15103	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
126351	chr2	27408701	27410550	+	0	NA	promoter-TSS (NM_177983)	promoter-TSS (NM_177983)	-34	NM_177983	5496		NM_177983	ENSG00000115241	PPM1G	PP2CG|PP2CGAMMA|PPP2CG	protein phosphatase, Mg2+/Mn2+ dependent 1G	protein-coding
218958	chr8	61095751	61096600	+	0	NA	Intergenic	Intergenic	-128427	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
42458	chr11	69558471	69559130	+	0	NA	Intergenic	Intergenic	73239	NR_120543	101928292		NR_120542		LINC01488	BRCAT8|CUPID1	long intergenic non-protein coding RNA 1488	ncRNA
21885	chr1	207801071	207801230	+	0	NA	TTS (NR_135298)	TTS (NR_135298)	789	NR_029832	407026		NR_029832	ENSG00000284214	MIR29C	MIRN29C|miRNA29C|mir-29c	microRNA 29c	ncRNA
114970	chr19	14010021	14010750	+	0	NA	Intergenic	AluSz|SINE|Alu	-4065	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
132208	chr2	102104271	102104690	+	0	NA	promoter-TSS (NM_001320986)	promoter-TSS (NM_001320986)	-124	NM_001320986	3554		NM_000877	ENSG00000115594	IL1R1	CD121A|CRMO3|D2S1473|IL-1R-alpha|IL-1RT1|IL1R|IL1RA|P80	interleukin 1 receptor type 1	protein-coding
182666	chr5	67221171	67222330	+	0	NA	Intergenic	Intergenic	-24951	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
147309	chr20	57704001	57704500	+	0	NA	intron (NM_199171, intron 1 of 3)	MER102a|DNA|hAT-Charlie	5765	NM_020182	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
218608	chr8	56066471	56066950	+	0	NA	TTS (NM_001146227)	TTS (NM_001146227)	7191	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
95420	chr17	36092101	36092700	+	0	NA	Intergenic	Intergenic	-2257	NM_002983	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
211405	chr7	105033771	105034850	+	0	NA	intron (NM_182931, intron 1 of 26)	AluJr4|SINE|Alu	20105	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
49070	chr12	14416551	14417100	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	31544	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
54973	chr12	96314251	96314350	+	0	NA	intron (NM_002595, intron 3 of 16)	AluJb|SINE|Alu	58802	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
215683	chr8	763701	764550	+	0	NA	intron (NM_001346810, intron 1 of 14)	intron (NM_001346810, intron 1 of 14)	25577	NR_134292	401442		NR_134292	ENSG00000282375	LOC401442	-	uncharacterized LOC401442	ncRNA
201722	chr6	149768001	149768400	+	0	NA	intron (NM_001252051, intron 1 of 6)	AluJr|SINE|Alu	18459	NM_001360456	5110		NM_005389	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
1212	chr1	2262221	2262480	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	34031	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
196936	chr6	52421671	52422350	+	0	NA	intron (NM_001172420, intron 1 of 11)	intron (NM_001172420, intron 1 of 11)	1002	NM_001172420	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
188107	chr5	150374671	150375030	+	0	NA	intron (NM_001371623, intron 9 of 26)	intron (NM_001371623, intron 9 of 26)	17153	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
17150	chr1	156197071	156197430	+	0	NA	intron (NR_104408, intron 2 of 3)	intron (NR_104408, intron 2 of 3)	3146	NM_001286184	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
80390	chr16	2551671	2552230	+	0	NA	intron (NM_031268, intron 1 of 10)	AluSq|SINE|Alu	13929	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
32215	chr10	101790101	101790300	+	0	NA	intron (NM_001142434, intron 13 of 14)	intron (NM_001142434, intron 13 of 14)	-6787	NM_006993	10360		NM_006993	ENSG00000107833	NPM3	PORMIN|TMEM123	nucleophosmin/nucleoplasmin 3	protein-coding
90719	chr17	1890421	1891330	+	0	NA	intron (NM_001355120, intron 14 of 16)	intron (NM_001355120, intron 14 of 16)	60870	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
127245	chr2	38681601	38683480	+	0	NA	intron (NM_138801, intron 3 of 6)	Plat_L3|LINE|CR1	16426	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
72373	chr15	31360841	31362550	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	34860	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
29453	chr10	70459571	70459730	+	0	NA	Intergenic	Intergenic	-11702	NM_001329906	4838		NM_018055	ENSG00000156574	NODAL	HTX5	nodal growth differentiation factor	protein-coding
94408	chr17	29003301	29003500	+	0	NA	intron (NM_001290202, intron 1 of 16)	intron (NM_001290202, intron 1 of 16)	2633	NM_178860	124925		NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
72425	chr15	31474271	31475100	+	0	NA	TTS (NM_001382637).2	TTS (NM_001382637).2	147850	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
35573	chr11	1688321	1689030	+	0	NA	Intergenic	Intergenic	-3046	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
50286	chr12	46369551	46370150	+	0	NA	intron (NM_001307936, intron 3 of 14)	intron (NM_001307936, intron 3 of 14)	2923	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
209634	chr7	77734701	77735500	+	0	NA	intron (NM_198467, intron 1 of 7)	intron (NM_198467, intron 1 of 7)	-37755	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
1681	chr1	4047001	4047200	+	0	NA	Intergenic	Intergenic	-98120	NR_147024	105376672		NR_147024	ENSG00000226374	LINC01345	-	long intergenic non-protein coding RNA 1345	ncRNA
8933	chr1	44033201	44033400	+	0	NA	Intergenic	Intergenic	-1838	NM_001328630	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
94160	chr17	28368121	28368530	+	0	NA	intron (NM_000638, intron 6 of 7)	intron (NM_000638, intron 6 of 7)	1982	NM_000638	7448		NM_000638	ENSG00000109072	VTN	V75|VN|VNT	vitronectin	protein-coding
27278	chr10	30192901	30193300	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-18752	NR_120653	101929279		NR_120653		LOC101929279	-	uncharacterized LOC101929279	ncRNA
48685	chr12	10580721	10581180	+	0	NA	Intergenic	LTR12|LTR|ERV1	18885	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
56371	chr12	113156601	113157000	+	0	NA	TTS (NM_001111322)	TTS (NM_001111322)	2377	NR_106956	102466222		NR_106956	ENSG00000276908	MIR7106	hsa-mir-7106	microRNA 7106	ncRNA
80365	chr16	2522651	2523030	+	0	NA	intron (NM_001330449, intron 3 of 10)	intron (NM_001330449, intron 3 of 10)	2469	NM_001330449	51005		NM_015944	ENSG00000162066	AMDHD2	CGI-14	amidohydrolase domain containing 2	protein-coding
215784	chr8	2146351	2146980	+	0	NA	Intergenic	L1MC1|LINE|L1	70076	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
121274	chr19	46709901	46710100	+	0	NA	promoter-TSS (NR_036157)	promoter-TSS (NR_036157)	-646	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
138622	chr2	210002051	210003130	+	0	NA	promoter-TSS (NM_001318931)	promoter-TSS (NM_001318931)	25	NM_001278282	6120		NM_006916	ENSG00000197713	RPE	RPE2-1	ribulose-5-phosphate-3-epimerase	protein-coding
6293	chr1	27614071	27615580	+	0	NA	intron (NM_001042747, intron 10 of 12)	intron (NM_001042747, intron 10 of 12)	-10681	NM_001371928	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
137434	chr2	196846251	196846350	+	0	NA	intron (NM_024989, intron 22 of 26)	intron (NM_024989, intron 22 of 26)	-36945	NM_213608	401027		NM_213608	ENSG00000187944	C2orf66	IIDS6411|UNQ6411	chromosome 2 open reading frame 66	protein-coding
146122	chr20	48622751	48623050	+	0	NA	Intergenic	Intergenic	205099	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
56902	chr12	120362851	120363150	+	0	NA	intron (NM_002442, intron 6 of 14)	intron (NM_002442, intron 6 of 14)	6164	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
57637	chr12	122511821	122512630	+	0	NA	intron (NR_036436, intron 6 of 9)	intron (NR_036436, intron 6 of 9)	-11293	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
5115	chr1	24874451	24874750	+	0	NA	Intergenic	AluJo|SINE|Alu	44816	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
81836	chr16	11578571	11579150	+	0	NA	intron (NR_024320, intron 1 of 3)	L1MD3|LINE|L1	7513	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
160344	chr3	27719701	27720500	+	0	NA	intron (NM_001278182, intron 2 of 5)	intron (NM_001278182, intron 2 of 5)	2223	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
50073	chr12	44818521	44818780	+	0	NA	intron (NM_001145108, intron 2 of 19)	LTR103b_Mam|LTR|ERV1?	57011	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
212222	chr7	120957151	120958130	+	0	NA	TTS (NM_198267)	TTS (NM_198267)	6863	NM_019071	54556		NM_019071	ENSG00000071243	ING3	Eaf4|ING2|MEAF4|p47ING3	inhibitor of growth family member 3	protein-coding
94195	chr17	28573471	28573830	+	0	NA	intron (NM_005165, intron 8 of 8)	intron (NM_005165, intron 8 of 8)	-2126	NM_033198	94005		NM_033198	ENSG00000087111	PIGS	DEE95|GPIBD18|PIG-S	phosphatidylinositol glycan anchor biosynthesis class S	protein-coding
32654	chr10	103771851	103773080	+	0	NA	intron (NM_014631, intron 2 of 13)	intron (NM_014631, intron 2 of 13)	25686	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
4336	chr1	20507401	20508680	+	0	NA	5' UTR (NM_024544, exon 1 of 4)	5' UTR (NM_024544, exon 1 of 4)	111	NM_024544	79594		NM_024544	ENSG00000090432	MUL1	C1orf166|GIDE|MAPL|MULAN|RNF218	mitochondrial E3 ubiquitin protein ligase 1	protein-coding
27758	chr10	35218171	35219200	+	0	NA	Intergenic	Intergenic	22783	NM_182724	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
23293	chr1	228062551	228063130	+	0	NA	Intergenic	Intergenic	13710	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
77662	chr15	85555051	85555350	+	0	NA	intron (NM_007200, intron 5 of 36)	intron (NM_007200, intron 5 of 36)	-64750	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
92087	chr17	7559671	7559830	+	0	NA	intron (NM_172087, intron 2 of 4)	intron (NM_172087, intron 2 of 4)	1458	NM_172087	8741		NM_003808	ENSG00000161955	TNFSF13	APRIL|CD256|TALL-2|TALL2|TNLG7B|TRDL-1|UNQ383/PRO715|ZTNF2	TNF superfamily member 13	protein-coding
232838	chr9	136760601	136761200	+	0	NA	intron (NM_203347, intron 6 of 6)	MLT1C|LTR|ERVL-MaLR	-2357	NM_001345934	138307		NM_178469	ENSG00000204001	LCN8	EP17|LCN5	lipocalin 8	protein-coding
184587	chr5	102864121	102864580	+	0	NA	intron (NM_001364582, intron 1 of 24)	intron (NM_001364582, intron 1 of 24)	-1473	NM_138821	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
11962	chr1	94018701	94018900	+	0	NA	intron (NM_000350, intron 36 of 49)	intron (NM_000350, intron 36 of 49)	102348	NM_000350	24		NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
144352	chr20	35003651	35004230	+	0	NA	intron (NM_199368, intron 17 of 18)	intron (NM_199368, intron 17 of 18)	-13468	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
197171	chr6	60250451	60250730	+	0	NA	Intergenic	AluSc|SINE|Alu	-1323540	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2 like 9 (pseudogene)	pseudo
171320	chr3	195978971	195979330	+	0	NA	intron (NR_003264, intron 7 of 16)	L2c|LINE|L2	11129	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
123294	chr19	53556201	53557000	+	0	NA	intron (NM_001317116, intron 2 of 4)	FLAM_C|SINE|Alu	1293	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
182283	chr5	57243521	57244180	+	0	NA	intron (NM_001331037, intron 7 of 12)	AluJo|SINE|Alu	29776	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
17411	chr1	156646151	156646250	+	0	NA	intron (NM_198427, intron 2 of 7)	intron (NM_198427, intron 2 of 7)	4083	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
230768	chr9	128908751	128909050	+	0	NA	exon (NM_001127245, exon 2 of 3)	exon (NM_001127245, exon 2 of 3)	-12082	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
100572	chr17	62892971	62893130	+	0	NA	Intergenic	Intergenic	-51165	NR_030363	693218		NR_030363	ENSG00000207552	MIR633	MIRN633|hsa-mir-633	microRNA 633	ncRNA
113025	chr19	7931101	7932350	+	0	NA	intron (NM_006351, intron 9 of 12)	intron (NM_006351, intron 9 of 12)	-5590	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
51594	chr12	52689801	52690000	+	0	NA	3' UTR (NM_175078, exon 9 of 9)	3' UTR (NM_175078, exon 9 of 9)	-9493	NM_006121	3848		NM_006121	ENSG00000167768	KRT1	AEI2|CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK	keratin 1	protein-coding
105438	chr17	82907871	82908230	+	0	NA	intron (NM_005993, intron 21 of 38)	intron (NM_005993, intron 21 of 38)	-68028	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
159795	chr3	16325701	16326280	+	0	NA	intron (NM_015150, intron 8 of 9)	MIRb|SINE|MIR	60778	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
119715	chr19	41175871	41176430	+	0	NA	Intergenic	Intergenic	-17069	NM_030622	29785		NM_030622	ENSG00000167600	CYP2S1	CYPIIS1	cytochrome P450 family 2 subfamily S member 1	protein-coding
182912	chr5	70452221	70452480	+	0	NA	intron (NR_027386, intron 3 of 5).2	MER102a|DNA|hAT-Charlie	-34151	NR_073404	441081		NR_073404		LOC441081	-	POM121 membrane glycoprotein (rat) pseudogene	pseudo
177824	chr4	123625071	123625330	+	0	NA	Intergenic	Intergenic	-24791	NR_027105	285419		NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
221226	chr8	121348721	121349200	+	0	NA	Intergenic	Intergenic	-290386	NR_002835	594842		NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
149465	chr21	31714051	31714750	+	0	NA	intron (NM_001145444, intron 1 of 18)	intron (NM_001145444, intron 1 of 18)	17718	NM_001145445	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
46120	chr11	122980751	122980850	+	0	NA	intron (NM_001098169, intron 1 of 2)	intron (NM_001098169, intron 1 of 2)	1034	NM_001098169	390259		NM_001098169	ENSG00000188909	BSX	BSX1	brain specific homeobox	protein-coding
191627	chr6	12605871	12606130	+	0	NA	Intergenic	Intergenic	-20596	NR_149140	101928309		NR_149140	ENSG00000234015	LINC02530	-	long intergenic non-protein coding RNA 2530	ncRNA
215266	chr7	157005171	157005800	+	0	NA	promoter-TSS (NR_147077)	promoter-TSS (NR_147077)	-822	NR_147077	105375606		NR_147077	ENSG00000235029	MNX1-AS2	-	MNX1 antisense RNA 2	ncRNA
126857	chr2	31934321	31934780	+	0	NA	intron (NR_163998, intron 3 of 8)	intron (NR_163998, intron 3 of 8)	76214	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
205109	chr7	6847801	6848400	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-21825	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
135107	chr2	157404101	157404830	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-23956	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
168620	chr3	149585221	149585480	+	0	NA	intron (NM_001348362, intron 5 of 9)	AluSq2|SINE|Alu	72675	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
31456	chr10	96129671	96130710	+	0	NA	promoter-TSS (NM_001330738)	promoter-TSS (NM_001330738)	-90	NM_001330737	9849		NM_014803	ENSG00000177853	ZNF518A	ZNF518	zinc finger protein 518A	protein-coding
157698	chr22	46368601	46369330	+	0	NA	intron (NM_001378328, intron 27 of 34)	intron (NM_001378328, intron 27 of 34)	33251	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
117618	chr19	23251601	23252250	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1531	NM_001355406	440519		NM_001355404	ENSG00000196081	ZNF724	ZNF724P	zinc finger protein 724	protein-coding
42810	chr11	72816771	72817280	+	0	NA	intron (NM_033388, intron 2 of 17)	intron (NM_033388, intron 2 of 17)	2614	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
149572	chr21	33236851	33237150	+	0	NA	intron (NM_001385055, intron 1 of 9)	intron (NM_001385055, intron 1 of 9)	7062	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
158303	chr22	50399421	50400500	+	0	NA	intron (NM_001351648, intron 3 of 22)	LTR79|LTR|ERVL	-7482	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
9826	chr1	54003671	54003850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	14426	NM_001010978	388633		NM_001010978	ENSG00000203985	LDLRAD1	-	low density lipoprotein receptor class A domain containing 1	protein-coding
185622	chr5	131509371	131509530	+	0	NA	intron (NM_016340, intron 8 of 27)	AluY|SINE|Alu	125779	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
93048	chr17	17388171	17388480	+	0	NA	Intergenic	Intergenic	84952	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
155388	chr22	38314701	38315200	+	0	NA	intron (NM_001289912, intron 5 of 14)	intron (NM_001289912, intron 5 of 14)	2483	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
198729	chr6	108286521	108286780	+	0	NA	Intergenic	L1MA9|LINE|L1	-8404	NR_136553	246269		NM_145315	ENSG00000135537	AFG1L	AFG1|LACE1|c222389	AFG1 like ATPase	protein-coding
63714	chr14	21198621	21200300	+	0	NA	TTS (NR_038971)	TTS (NR_038971)	6043	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
67516	chr14	70981451	70983030	+	0	NA	intron (NM_001308160, intron 6 of 33)	intron (NM_001308160, intron 6 of 33)	74781	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
5072	chr1	24674721	24674980	+	0	NA	Intergenic	AluJr|SINE|Alu	31271	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
124121	chr19	55667821	55668600	+	0	NA	intron (NM_007279, intron 7 of 11)	intron (NM_007279, intron 7 of 11)	-6985	NM_001321263	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
100465	chr17	61408521	61408900	+	0	NA	3' UTR (NM_005994, exon 7 of 7)	3' UTR (NM_005994, exon 7 of 7)	-3041	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
117485	chr19	19801601	19802250	+	0	NA	intron (NM_001145404, intron 2 of 2)	AluSx|SINE|Alu	19825	NM_001099269	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
235735	chrX	48932901	48933300	+	0	NA	intron (NM_001136157, intron 5 of 8)	L1MC3|LINE|L1	-14076	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
223097	chr8	143429051	143429480	+	0	NA	3' UTR (NM_201589, exon 1 of 1)	3' UTR (NM_201589, exon 1 of 1)	1467	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
216880	chr8	22646001	22646580	+	0	NA	intron (NR_156436, intron 1 of 9)	intron (NR_156436, intron 1 of 9)	-4081	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
179914	chr5	693001	695400	+	0	NA	promoter-TSS (NM_007030)	promoter-TSS (NM_007030)	-848	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
63675	chr14	21070801	21072000	+	0	NA	promoter-TSS (NM_001282211)	promoter-TSS (NM_001282211)	-528	NM_001282211	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
50108	chr12	44868571	44868730	+	0	NA	intron (NM_001145108, intron 2 of 19)	L1MA8|LINE|L1	7011	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
76366	chr15	74596151	74596550	+	0	NA	3' UTR (NM_001307939, exon 9 of 9)	3' UTR (NM_001307939, exon 9 of 9)	-12022	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
128326	chr2	54669821	54670280	+	0	NA	3' UTR (NM_003128, exon 36 of 36)	3' UTR (NM_003128, exon 36 of 36)	-54962	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133526	chr2	120225151	120225250	+	0	NA	Intergenic	Intergenic	-1800	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
44227	chr11	96344471	96344630	+	0	NA	Intergenic	Intergenic	-1355	NM_032427	84441		NM_032427	ENSG00000184384	MAML2	MAM-3|MAM2|MAM3|MLL-MAML2	mastermind like transcriptional coactivator 2	protein-coding
80020	chr16	1931921	1932600	+	0	NA	Intergenic	Intergenic	10939	NM_016332	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
50460	chr12	47743771	47744630	+	0	NA	intron (NM_001098532, intron 15 of 26)	intron (NM_001098532, intron 15 of 26)	14198	NM_001098532	10411		NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
157666	chr22	46267671	46268680	+	0	NA	intron (NM_017931, intron 1 of 13)	(GGCGCG)n|Simple_repeat|Simple_repeat	167	NM_017931	55020		NM_017931	ENSG00000075234	TTC38	LL22NC03-5H6.5	tetratricopeptide repeat domain 38	protein-coding
105867	chr18	3150471	3150830	+	0	NA	intron (NM_019856, intron 12 of 36)	intron (NM_019856, intron 12 of 36)	69318	NM_019856	8736		NM_003803	ENSG00000101605	MYOM1	SKELEMIN	myomesin 1	protein-coding
235869	chrX	51420601	51420900	+	0	NA	Intergenic	Intergenic	13802	NM_203407	340602		NM_203407	ENSG00000187690	EZHIP	CATACOMB|CXorf67|KIP75	EZH inhibitory protein	protein-coding
22100	chr1	211613551	211613650	+	0	NA	Intergenic	Intergenic	-26208	NR_131925	105748977		NR_131925	ENSG00000227764	NTRAS	LINC01693	non-coding transcript regulating alternative splicing	ncRNA
22468	chr1	221707051	221707530	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	29610	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
173742	chr4	16199271	16199430	+	0	NA	intron (NM_153365, intron 3 of 13)	intron (NM_153365, intron 3 of 13)	27121	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
114699	chr19	13135821	13136480	+	0	NA	exon (NM_052876, exon 2 of 6)	exon (NM_052876, exon 2 of 6)	14225	NM_003765	8677		NM_003765	ENSG00000104915	STX10	SYN10|hsyn10	syntaxin 10	protein-coding
154619	chr22	36308401	36309750	+	0	NA	intron (NM_002473, intron 15 of 40)	intron (NM_002473, intron 15 of 40)	-22168	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
74489	chr15	60004171	60004650	+	0	NA	promoter-TSS (NM_012182)	promoter-TSS (NM_012182)	99	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
108593	chr18	75215801	75217200	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	5703	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
6962	chr1	31768221	31768480	+	0	NA	Intergenic	L2a|LINE|L2	-4010	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
18034	chr1	160584921	160585530	+	0	NA	Intergenic	HSMAR2|DNA|TcMar-Mariner	-5709	NM_001184882	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
190454	chr5	179975201	179975580	+	0	NA	intron (NM_001280801, intron 5 of 7)	MER20|DNA|hAT-Charlie	40007	NR_029885	442908		NR_029885	ENSG00000198995	MIR340	MIRN340|hsa-mir-340|mir-340	microRNA 340	ncRNA
31305	chr10	92602821	92603730	+	0	NA	intron (NM_004523, intron 1 of 21)	AluSx1|SINE|Alu	10145	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
75533	chr15	66654601	66655330	+	0	NA	intron (NR_110372, intron 1 of 4)	CpG	-47271	NM_005585	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
231594	chr9	131545471	131545900	+	0	NA	intron (NM_001365666, intron 1 of 3)	intron (NM_001365666, intron 1 of 3)	162	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
85908	chr16	57077751	57078450	+	0	NA	intron (NM_001384955, intron 42 of 47)	intron (NM_001384955, intron 42 of 47)	-14483	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
50801	chr12	49062921	49063230	+	0	NA	Intergenic	MIRb|SINE|MIR	-2281	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
50495	chr12	47801671	47801900	+	0	NA	intron (NR_160435, intron 1 of 24)	intron (NR_160435, intron 1 of 24)	18118	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
65447	chr14	51653271	51653680	+	0	NA	intron (NM_001267046, intron 1 of 13)	intron (NM_001267046, intron 1 of 13)	1565	NM_001267046	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
232467	chr9	136199651	136200330	+	0	NA	intron (NM_178138, intron 2 of 5)	CpG-29079	1684	NM_001363746	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
33853	chr10	124340801	124341400	+	0	NA	Intergenic	Intergenic	77823	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
32333	chr10	102235101	102235500	+	0	NA	intron (NM_005029, intron 1 of 3)	intron (NM_005029, intron 1 of 3)	6212	NM_005029	5309		NM_005029	ENSG00000107859	PITX3	ASGD1|ASMD|ASOD|CTPP4|CTRCT11|PTX3	paired like homeodomain 3	protein-coding
102469	chr17	75725821	75726280	+	0	NA	intron (NM_001005619, intron 1 of 38)	intron (NM_001005619, intron 1 of 38)	1354	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
158009	chr22	49882001	49882200	+	0	NA	intron (NM_014838, intron 1 of 1)	intron (NM_014838, intron 1 of 1)	28256	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
201895	chr6	151036351	151036530	+	0	NA	intron (NM_015440, intron 25 of 27)	intron (NM_015440, intron 25 of 27)	29432	NM_001350490	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
49463	chr12	25081351	25081450	+	0	NA	intron (NR_159368, intron 9 of 20)	AluY|SINE|Alu	28694	NM_006152	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
84920	chr16	31227801	31228400	+	0	NA	3' UTR (NM_001008274, exon 7 of 7)	3' UTR (NM_001008274, exon 7 of 7)	-10965	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
91500	chr17	4935251	4936330	+	0	NA	TTS (NM_000173)	TTS (NM_000173)	3513	NM_000173	2811		NM_000173	ENSG00000185245	GP1BA	BDPLT1|BDPLT3|BSS|CD42B|CD42b-alpha|DBPLT3|GP1B|GPIbA|GPIbalpha|VWDP	glycoprotein Ib platelet subunit alpha	protein-coding
66688	chr14	64060501	64060900	+	0	NA	intron (NM_015180, intron 49 of 114)	L1M1|LINE|L1	34425	NR_031677	100313830		NR_031677	ENSG00000221537	MIR548H1	MIR548H-1|MIRN548H1	microRNA 548h-1	ncRNA
138400	chr2	204880721	204881200	+	0	NA	intron (NM_205863, intron 2 of 21)	(AATCAGAG)n|Simple_repeat|Simple_repeat	335485	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
199251	chr6	111841701	111842500	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	30971	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
148289	chr20	63704901	63705650	+	0	NA	intron (NM_003224, intron 4 of 7)	intron (NM_003224, intron 4 of 7)	-2167	NM_001083113	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
171577	chr3	197000701	197000900	+	0	NA	TTS (NM_005929)	TTS (NM_005929)	-2106	NR_038285	100507057		NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1|PLANE	MELTF antisense RNA 1	ncRNA
189595	chr5	175657671	175658270	+	0	NA	promoter-TSS (NM_001367711)	promoter-TSS (NM_001367711)	-101	NR_160284	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
18817	chr1	167650121	167650750	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	20203	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
154787	chr22	36774571	36774730	+	0	NA	intron (NR_033531, intron 1 of 1)	AluSx|SINE|Alu	1469	NM_006860	11020		NM_006860	ENSG00000100360	IFT27	BBS19|CFAP156|FAP156|RABL4|RAYL	intraflagellar transport 27	protein-coding
63222	chr13	113865051	113865550	+	0	NA	non-coding (NR_044993, exon 2 of 2)	non-coding (NR_044993, exon 2 of 2)	1123	NR_044993	100506394		NR_044993	ENSG00000272695	GAS6-DT	GAS6-AS2	GAS6 divergent transcript	ncRNA
97445	chr17	43645851	43646360	+	0	NA	intron (NM_004527, intron 1 of 2)	CpG	15458	NM_013999	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
219181	chr8	66550551	66551150	+	0	NA	Intergenic	Intergenic	57284	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
230796	chr9	129007801	129008250	+	0	NA	TTS (NM_001369915)	TTS (NM_001369915)	20306	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
79657	chr16	1196401	1197250	+	0	NA	intron (NM_021098, intron 5 of 34)	intron (NM_021098, intron 5 of 34)	28443	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
70548	chr14	102528921	102529180	+	0	NA	Intergenic	AluJb|SINE|Alu	-10594	NR_036192	100422954		NR_036192	ENSG00000266015	MIR4309	-	microRNA 4309	ncRNA
141219	chr2	239387571	239387930	+	0	NA	intron (NM_001378417, intron 1 of 26)	MIRc|SINE|MIR	13270	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
215298	chr7	157298471	157298950	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-38294	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
184806	chr5	111238501	111239050	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	14391	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
182531	chr5	65621971	65622530	+	0	NA	intron (NM_033228, intron 1 of 12)	AluSz|SINE|Alu	2083	NM_001656	373		NM_001656	ENSG00000113595	TRIM23	ARD1|ARFD1|RNF46	tripartite motif containing 23	protein-coding
53150	chr12	57897221	57897680	+	0	NA	promoter-TSS (NR_148947)	promoter-TSS (NR_148947)	-968	NR_148947	283387		NR_148947	ENSG00000245651	LOC283387	-	uncharacterized LOC283387	ncRNA
6589	chr1	28762201	28762600	+	0	NA	intron (NM_016258, intron 4 of 4)	intron (NM_016258, intron 4 of 4)	25460	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
10964	chr1	84224121	84224380	+	0	NA	intron (NM_002731, intron 9 of 9)	L1MA4A|LINE|L1	42618	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
212464	chr7	128469651	128469750	+	0	NA	Intergenic	Intergenic	-7048	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
163971	chr3	53041501	53041700	+	0	NA	intron (NM_016329, intron 1 of 20)	AluSq2|SINE|Alu	4473	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
211597	chr7	105820651	105820950	+	0	NA	intron (NM_001385596, intron 2 of 11)	MSTB|LTR|ERVL-MaLR	55785	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
194544	chr6	33320551	33320650	+	0	NA	intron (NM_001254717, intron 2 of 6)	intron (NM_001254717, intron 2 of 6)	2359	NM_001350	1616		NM_001350	ENSG00000204209	DAXX	BING2|DAP6|EAP1|SMIM40	death domain associated protein	protein-coding
182816	chr5	69096771	69097330	+	0	NA	intron (NM_001251969, intron 1 of 2)	intron (NM_001251969, intron 1 of 2)	3036	NM_001251969	64924		NM_022902	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 member 5	protein-coding
115472	chr19	15358621	15358950	+	0	NA	intron (NM_005858, intron 13 of 13)	intron (NM_005858, intron 13 of 13)	21002	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
35092	chr11	630751	631250	+	0	NA	Intergenic	L1MB5|LINE|L1	-3819	NM_021920	6343		NM_021920	ENSG00000070031	SCT	-	secretin	protein-coding
223108	chr8	143458471	143458830	+	0	NA	intron (NM_015117, intron 9 of 11)	AluJb|SINE|Alu	-27918	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
110538	chr19	2088951	2089280	+	0	NA	intron (NM_130807, intron 1 of 4)	intron (NM_130807, intron 1 of 4)	7211	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
106161	chr18	9923551	9923850	+	0	NA	intron (NM_194434, intron 1 of 5)	intron (NM_194434, intron 1 of 5)	9684	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
26033	chr10	12354701	12355330	+	0	NA	intron (NM_153498, intron 1 of 10)	AluJr|SINE|Alu	5468	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
204694	chr7	5511001	5511400	+	0	NA	intron (NM_024963, intron 1 of 4)	AluY|SINE|Alu	2609	NM_001363441	80028		NM_024963	ENSG00000155034	FBXL18	Fbl18	F-box and leucine rich repeat protein 18	protein-coding
192324	chr6	22025751	22026050	+	0	NA	intron (NR_015410, intron 7 of 11)	intron (NR_015410, intron 7 of 11)	121293	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
135098	chr2	157365201	157365600	+	0	NA	Intergenic	Intergenic	15109	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
98883	chr17	48563501	48563700	+	0	NA	intron (NM_001384750, intron 1 of 3)	intron (NM_001384750, intron 1 of 3)	10848	NM_002146	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
228823	chr9	112029901	112030300	+	0	NA	Intergenic	Intergenic	98000	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
23744	chr1	232597771	232598150	+	0	NA	intron (NM_001377488, intron 1 of 21)	intron (NM_001377488, intron 1 of 21)	32173	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
13637	chr1	116439101	116439500	+	0	NA	intron (NR_125972, intron 2 of 3)	AluSx1|SINE|Alu	-20678	NR_027646	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
27546	chr10	32336201	32336750	+	0	NA	intron (NR_168508, intron 1 of 12)	L2a|LINE|L2	10683	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
50592	chr12	48618501	48618800	+	0	NA	Intergenic	Intergenic	35868	NR_002968	677815		NR_002968	ENSG00000221491	SNORA2C	ACA34|MIR1291|SNORA34	small nucleolar RNA, H/ACA box 2C	snoRNA
29959	chr10	73509601	73510030	+	0	NA	intron (NM_152586, intron 19 of 22)	AluJb|SINE|Alu	-13791	NM_001289969	5532		NM_021132	ENSG00000107758	PPP3CB	CALNA2|CALNB|CNA2|PP2Bbeta	protein phosphatase 3 catalytic subunit beta	protein-coding
175278	chr4	67537251	67537950	+	0	NA	intron (NR_155754, intron 4 of 18)	AluSx1|SINE|Alu	7903	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
20331	chr1	197763721	197764200	+	0	NA	intron (NM_001300858, intron 2 of 15)	intron (NM_001300858, intron 2 of 15)	11520	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
103045	chr17	77139151	77139250	+	0	NA	intron (NM_001204410, intron 3 of 18)	AluSx1|SINE|Alu	-1769	NM_001143999	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
148504	chr20	64077301	64078620	+	0	NA	promoter-TSS (NR_106871)	promoter-TSS (NR_106871)	-950	NR_106871	102466741		NR_106871	ENSG00000274034	MIR6813	hsa-mir-6813	microRNA 6813	ncRNA
19001	chr1	169550301	169550900	+	0	NA	intron (NM_000130, intron 9 of 24)	intron (NM_000130, intron 9 of 24)	35881	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
115565	chr19	15675621	15675880	+	0	NA	intron (NM_023944, intron 2 of 12)	intron (NM_023944, intron 2 of 12)	2663	NM_023944	66002		NM_023944	ENSG00000186204	CYP4F12	CYPIVF12|F22329_1	cytochrome P450 family 4 subfamily F member 12	protein-coding
121525	chr19	47225371	47226980	+	0	NA	promoter-TSS (NR_036158)	promoter-TSS (NR_036158)	-767	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
55446	chr12	104577721	104578500	+	0	NA	intron (NM_018413, intron 1 of 2)	MIR3|SINE|MIR	-13523	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
14064	chr1	120793351	120793650	+	0	NA	intron (NR_157049, intron 4 of 4)	intron (NR_157049, intron 4 of 4)	-12056	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
54479	chr12	92034771	92036000	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	106328	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
152959	chr22	22959151	22959480	+	0	NA	Intergenic	Intergenic	71499	NM_001178126	100423062		NM_001178126	ENSG00000254709	IGLL5	IGL|IGLV|VL-MAR	immunoglobulin lambda like polypeptide 5	protein-coding
97054	chr17	42358551	42358850	+	0	NA	intron (NM_001369516, intron 1 of 23)	MIRb|SINE|MIR	29742	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
107406	chr18	46148801	46149900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-24672	NM_001008239	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
84656	chr16	30738421	30739050	+	0	NA	exon (NM_006662, exon 34 of 34)	exon (NM_006662, exon 34 of 34)	-1907	NM_001256829	100862671		NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
37687	chr11	27700201	27701300	+	0	NA	promoter-TSS (NM_001709)	promoter-TSS (NM_001709)	150	NM_001143812	627		NM_001709	ENSG00000176697	BDNF	ANON2|BULN2	brain derived neurotrophic factor	protein-coding
218481	chr8	51894821	51895380	+	0	NA	intron (NM_052937, intron 1 of 5)	L2|LINE|L2	3936	NM_001363193	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
47619	chr12	6074301	6074770	+	0	NA	intron (NM_000552, intron 7 of 51)	intron (NM_000552, intron 7 of 51)	-34352	NR_145989	109729112		NR_145989		SNORA120	-	small nucleolar RNA, H/ACA box 120	snoRNA
86275	chr16	58510771	58510930	+	0	NA	intron (NM_001378344, intron 15 of 15)	intron (NM_001378344, intron 15 of 15)	-4629	NM_024860	79918		NM_024860	ENSG00000103037	SETD6	-	SET domain containing 6, protein lysine methyltransferase	protein-coding
50261	chr12	46262771	46263350	+	0	NA	intron (NM_001278387, intron 1 of 17)	MER5B|DNA|hAT-Charlie	3456	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
18947	chr1	168523301	168523500	+	0	NA	Intergenic	Intergenic	20597	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
139100	chr2	218895271	218895430	+	0	NA	Intergenic	Intergenic	14498	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
98721	chr17	48012121	48013200	+	0	NA	Intergenic	Intergenic	-20222	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
222746	chr8	141410671	141411030	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-10538	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
152609	chr22	21412121	21412380	+	0	NA	Intergenic	AluJr|SINE|Alu	-5121	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
87326	chr16	70283521	70284330	+	0	NA	intron (NM_001605, intron 1 of 20)	intron (NM_001605, intron 1 of 20)	5581	NM_001605	16		NM_001605	ENSG00000090861	AARS1	AARS|CMT2N|DEE29|EIEE29|HDLS2|TTD8	alanyl-tRNA synthetase 1	protein-coding
211411	chr7	105040821	105041600	+	0	NA	intron (NM_182931, intron 3 of 26)	intron (NM_182931, intron 3 of 26)	27005	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
97542	chr17	44065321	44067330	+	0	NA	intron (NM_001371445, intron 1 of 4)	CpG	346	NM_001369484	124801		NM_152344	ENSG00000161654	LSM12	PNAS-135	LSM12 homolog	protein-coding
123439	chr19	54126871	54127030	+	0	NA	intron (NM_015629, intron 9 of 13)	AluSg|SINE|Alu	-10812	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
30236	chr10	75012601	75012800	+	0	NA	intron (NM_012330, intron 13 of 17).2	intron (NM_012330, intron 13 of 17).2	-9033	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
204793	chr7	5624251	5624950	+	0	NA	intron (NM_207111, intron 15 of 16)	intron (NM_207111, intron 15 of 16)	31784	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
121847	chr19	48203501	48204930	+	0	NA	exon (NM_001351787, exon 11 of 11)	exon (NM_001351787, exon 11 of 11)	33535	NM_199341	374920		NM_199341	ENSG00000185453	ZSWIM9	C19orf68	zinc finger SWIM-type containing 9	protein-coding
148165	chr20	63526971	63527730	+	0	NA	TTS (NM_005975)	TTS (NM_005975)	6585	NM_024299	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
136665	chr2	180939151	180939400	+	0	NA	Intergenic	Intergenic	-41110	NM_001278555	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
173405	chr4	8090271	8090900	+	0	NA	intron (NM_001130086, intron 3 of 17)	L1ME2|LINE|L1	-18597	NM_001286688	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
9423	chr1	48093801	48094150	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	88453	NR_026749	391037		NR_026749		SKINT1L	BTN12|SKINT1|SKINTL|SKINTP	Skint1 like (pseudogene)	pseudo
145322	chr20	41081351	41081600	+	0	NA	intron (NM_003286, intron 7 of 20)	intron (NM_003286, intron 7 of 20)	52653	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
150955	chr21	44310901	44311100	+	0	NA	intron (NM_001002021, intron 5 of 24)	intron (NM_001002021, intron 5 of 24)	10947	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
57517	chr12	122122971	122123850	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	-44309	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
162020	chr3	46504821	46505080	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	6974	NM_031440	83597		NM_031440	ENSG00000163825	RTP3	LTM1|TMEM7|Z3CXXC3	receptor transporter protein 3	protein-coding
90668	chr17	1707901	1708100	+	0	NA	exon (NM_001164407, exon 4 of 4)	exon (NM_001164407, exon 4 of 4)	2377	NM_001164407	727910		NM_001164407	ENSG00000185561	TLCD2	-	TLC domain containing 2	protein-coding
41025	chr11	65440671	65441350	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	-3448	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
10328	chr1	64898151	64898680	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	68134	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
9880	chr1	54332651	54332950	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	73594	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
82247	chr16	15072101	15073100	+	0	NA	intron (NM_018427, intron 12 of 17)	AluSx1|SINE|Alu	-16521	NM_001270766	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
164279	chr3	57584671	57585480	+	0	NA	intron (NM_001660, intron 1 of 5)	AluSx1|SINE|Alu	12269	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
180163	chr5	1414371	1414550	+	0	NA	intron (NM_001044, intron 8 of 14).2	intron (NM_001044, intron 8 of 14).2	30980	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
150605	chr21	43360771	43361230	+	0	NA	non-coding (NR_131902, exon 1 of 2)	non-coding (NR_131902, exon 1 of 2)	1349	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
109860	chr19	1230251	1231380	+	0	NA	3' UTR (NM_152769, exon 9 of 9)	3' UTR (NM_152769, exon 9 of 9)	7190	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
63174	chr13	113724721	113727280	+	0	NA	intron (NM_002929, intron 4 of 6)	CpG	25089	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
113453	chr19	9850671	9850830	+	0	NA	Intergenic	Intergenic	7425	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
88649	chr16	85645051	85645350	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	31878	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
191771	chr6	14119751	14120050	+	0	NA	intron (NM_001040280, intron 2 of 4)	intron (NM_001040280, intron 2 of 4)	2128	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
150861	chr21	44087521	44088180	+	0	NA	exon (NM_001351709, exon 10 of 16)	exon (NM_001351709, exon 10 of 16)	13526	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
163308	chr3	50352721	50353800	+	0	NA	exon (NM_007022, exon 4 of 4)	exon (NM_007022, exon 4 of 4)	2398	NM_007022	11068		NM_007022	ENSG00000114395	CYB561D2	101F6|TSCytb|TSP10|XXcos-LUCA11.4	cytochrome b561 family member D2	protein-coding
83288	chr16	24072271	24072850	+	0	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	-130556	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
32155	chr10	101352721	101352980	+	0	NA	Intergenic	AluSx|SINE|Alu	-1183	NM_001256856	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
17210	chr1	156263401	156264530	+	0	NA	intron (NM_001323616, intron 13 of 22)	intron (NM_001323616, intron 13 of 22)	-15848	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
227579	chr9	92327201	92327600	+	0	NA	intron (NM_001286969, intron 1 of 6)	MER49|LTR|ERV1	1447	NM_001012267	401541		NM_001012267	ENSG00000188312	CENPP	CENP-P	centromere protein P	protein-coding
142730	chr20	10172251	10172580	+	0	NA	intron (NR_040710, intron 2 of 4)	CpG	-46415	NM_001322910	6616		NM_003081	ENSG00000132639	SNAP25	CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2	synaptosome associated protein 25	protein-coding
69859	chr14	99266471	99267100	+	0	NA	intron (NM_022898, intron 1 of 2)	intron (NM_022898, intron 1 of 2)	5412	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
70756	chr14	103406601	103406930	+	0	NA	intron (NM_002376, intron 2 of 15)	AluSx|SINE|Alu	21350	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
71058	chr14	104805071	104806180	+	0	NA	TTS (NM_001137601)	TTS (NM_001137601)	4524	NM_001137601	100128927		NM_001137601	ENSG00000179627	ZBTB42	LCCS6|ZNF925	zinc finger and BTB domain containing 42	protein-coding
184902	chr5	112874071	112874430	+	0	NA	intron (NM_001204199, intron 4 of 4)	AluSz6|SINE|Alu	12963	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
42940	chr11	73520701	73521100	+	0	NA	intron (NM_015159, intron 1 of 7)	intron (NM_015159, intron 1 of 7)	77212	NM_001286050	23201		NM_015159	ENSG00000054965	FAM168A	KIAA0280|TCRP1	family with sequence similarity 168 member A	protein-coding
135066	chr2	156471771	156471930	+	0	NA	intron (NM_000408, intron 1 of 16)	intron (NM_000408, intron 1 of 16)	35471	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
177046	chr4	107929721	107930050	+	0	NA	intron (NR_125929, intron 1 of 6)	intron (NR_125929, intron 1 of 6)	-1664	NM_183075	113612		NM_183075	ENSG00000155016	CYP2U1	P450TEC|SPG49|SPG56	cytochrome P450 family 2 subfamily U member 1	protein-coding
2599	chr1	9908421	9908680	+	0	NA	intron (NM_020248, intron 1 of 5)	AluYc3|SINE|Alu	1719	NM_020248	56998		NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
90377	chr17	1264251	1264630	+	0	NA	Intergenic	Intergenic	-6004	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
83939	chr16	29110651	29110950	+	0	NA	intron (NR_003369, intron 15 of 16)	intron (NR_003369, intron 15 of 16)	35958	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
152731	chr22	21685021	21685480	+	0	NA	intron (NM_148175, intron 10 of 20)	intron (NM_148175, intron 10 of 20)	19238	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
25417	chr10	6562271	6562430	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	17926	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
38314	chr11	43944201	43944430	+	0	NA	TTS (NM_001145033)	TTS (NM_001145033)	1678	NM_001145033	387763		NM_001145033	ENSG00000187479	C11orf96	AG2	chromosome 11 open reading frame 96	protein-coding
115104	chr19	14294801	14295950	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-38368	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
125151	chr2	10012771	10013530	+	0	NA	Intergenic	CpG	30251	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
5121	chr1	24881021	24881880	+	0	NA	Intergenic	L1MC1|LINE|L1	37966	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
233225	chr9	137237851	137237950	+	0	NA	Intergenic	Intergenic	-3387	NM_006088	10383		NM_006088	ENSG00000188229	TUBB4B	Beta2|LCAEOD|TUBB2|TUBB2C	tubulin beta 4B class IVb	protein-coding
12013	chr1	96685621	96685880	+	0	NA	Intergenic	Intergenic	-35855	NM_001300988	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
21350	chr1	204723071	204723430	+	0	NA	Intergenic	(CTCACA)n|Simple_repeat|Simple_repeat	-37512	NM_201630	10446		NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
140860	chr2	237437921	237438380	+	0	NA	Intergenic	Intergenic	-23943	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
184652	chr5	107519871	107520430	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	150787	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
86622	chr16	67397951	67398450	+	0	NA	intron (NM_013304, intron 8 of 10)	intron (NM_013304, intron 8 of 10)	-4702	NM_016140	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
136801	chr2	181656671	181657050	+	0	NA	non-coding (NR_027689, exon 1 of 11)	non-coding (NR_027689, exon 1 of 11)	245	NM_201548	375298		NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding
70276	chr14	101731071	101732330	+	0	NA	intron (NR_026774, intron 2 of 3)	intron (NR_026774, intron 2 of 3)	1263	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
229302	chr9	120863401	120864000	+	0	NA	intron (NM_001286840, intron 10 of 14)	intron (NM_001286840, intron 10 of 14)	5211	NR_104601	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
67636	chr14	73057921	73059800	+	0	NA	intron (NM_021239, intron 1 of 18)	CpG	326	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
147530	chr20	59308501	59308900	+	0	NA	intron (NM_207034, intron 2 of 4)	intron (NM_207034, intron 2 of 4)	8089	NM_001302456	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
193460	chr6	30510351	30510450	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-5866	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
156188	chr22	40263201	40264000	+	0	NA	intron (NM_001024843, intron 7 of 23)	intron (NM_001024843, intron 7 of 23)	-82900	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
19873	chr1	183543671	183543900	+	0	NA	intron (NM_173156, intron 14 of 21)	intron (NM_173156, intron 14 of 21)	46674	NM_000433	4688		NM_000433	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
150367	chr21	42218351	42219500	+	0	NA	promoter-TSS (NM_207174)	promoter-TSS (NM_207174)	-215	NM_016818	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
222779	chr8	141984771	141985530	+	0	NA	Intergenic	Intergenic	-191189	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
48184	chr12	8020621	8021080	+	0	NA	Intergenic	L2c|LINE|L2	-11866	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
52383	chr12	55719171	55719600	+	0	NA	intron (NR_037658, intron 3 of 5)	intron (NR_037658, intron 3 of 5)	-1008	NM_002905	5959		NM_002905	ENSG00000135437	RDH5	9cRDH|HSD17B9|RDH1|SDR9C5	retinol dehydrogenase 5	protein-coding
90179	chr17	335021	335280	+	0	NA	intron (NM_006987, intron 1 of 9).2	intron (NM_006987, intron 1 of 9).2	3631	NR_164141	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
213320	chr7	135171951	135172450	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-1374	NM_001243754	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
9350	chr1	46724771	46725500	+	0	NA	Intergenic	Intergenic	-6021	NM_014774	9813		NM_014774	ENSG00000159658	EFCAB14	KIAA0494	EF-hand calcium binding domain 14	protein-coding
157816	chr22	47068171	47068330	+	0	NA	intron (NM_001284305, intron 11 of 12)	intron (NM_001284305, intron 11 of 12)	-152208	NR_122047	642757		NR_122047	ENSG00000280080	TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
174140	chr4	36231971	36232430	+	0	NA	intron (NR_146894, intron 1 of 32)	MLT1A|LTR|ERVL-MaLR	11739	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
132022	chr2	100730401	100730600	+	0	NA	Intergenic	Intergenic	-89639	NM_002518	4862		NM_002518	ENSG00000170485	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
117896	chr19	32708421	32708830	+	0	NA	intron (NM_001105570, intron 1 of 2)	intron (NM_001105570, intron 1 of 2)	-11142	NM_001110822	91646		NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
105617	chr18	785901	786300	+	0	NA	intron (NM_005433, intron 1 of 11)	MSTD|LTR|ERVL-MaLR	26142	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
235619	chrX	48020871	48021750	+	0	NA	Intergenic	Intergenic	13569	NM_001079900	729201		NM_001079900	ENSG00000171478	SPACA5B	LYZL5B	sperm acrosome associated 5B	protein-coding
60287	chr13	40626821	40627480	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	39491	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
184535	chr5	102296001	102297250	+	0	NA	promoter-TSS (NM_180991)	promoter-TSS (NM_180991)	-341	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
206309	chr7	30165371	30165530	+	0	NA	Intergenic	Intergenic	30464	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
70083	chr14	100162801	100163000	+	0	NA	Intergenic	Intergenic	-3255	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
154869	chr22	37134401	37134600	+	0	NA	intron (NM_000878, intron 8 of 9)	AluSx|SINE|Alu	15416	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
136307	chr2	174844051	174844750	+	0	NA	intron (NM_001025201, intron 7 of 12)	intron (NM_001025201, intron 7 of 12)	3155	NM_001206602	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
49969	chr12	42094001	42094620	+	0	NA	intron (NM_173601, intron 7 of 7)	AluJb|SINE|Alu	50564	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
98130	chr17	45895411	45896130	+	0	NA	promoter-TSS (NR_024559)	promoter-TSS (NR_024559)	-13	NR_024560	100130148		NR_024560	ENSG00000279685	MAPT-IT1	-	MAPT intronic transcript 1	ncRNA
157531	chr22	45417901	45418100	+	0	NA	intron (NM_015653, intron 3 of 6)	intron (NM_015653, intron 3 of 6)	4307	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
76381	chr15	74613271	74613990	+	0	NA	intron (NM_003992, intron 1 of 12)	intron (NM_003992, intron 1 of 12)	-2206	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
193791	chr6	31405551	31405650	+	0	NA	intron (NM_001177519, intron 1 of 5).2	L1MA3|LINE|L1	2005	NM_000247	100507436		NM_000247	ENSG00000204520	MICA	MIC-A|PERB11.1	MHC class I polypeptide-related sequence A	protein-coding
94694	chr17	30666901	30667300	+	0	NA	Intergenic	Intergenic	-42508	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
169474	chr3	169658351	169659180	+	0	NA	intron (NM_004991, intron 1 of 16)	intron (NM_004991, intron 1 of 16)	4947	NM_001205194	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
87096	chr16	68522921	68523180	+	0	NA	Intergenic	AluSz6|SINE|Alu	-16163	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
71126	chr14	104967471	104968450	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	2547	NM_001350929	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
160271	chr3	25782801	25784330	+	0	NA	promoter-TSS (NM_001145293)	promoter-TSS (NM_001145293)	-67	NM_001145295	55768		NM_018297	ENSG00000151092	NGLY1	CDDG|CDG1V|PNG-1|PNG1|PNGase	N-glycanase 1	protein-coding
187609	chr5	142952271	142952450	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-83450	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
177373	chr4	110631951	110632450	+	0	NA	intron (NM_153427, intron 3 of 4)	CpG	-9123	NM_000325	5308		NM_000325	ENSG00000164093	PITX2	ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired like homeodomain 2	protein-coding
142366	chr20	3783071	3783700	+	0	NA	TTS (NM_001810)	TTS (NM_001810)	-1937	NM_015417	25876		NM_015417	ENSG00000101222	SPEF1	C20orf28|CLAMP|SPEF1A	sperm flagellar 1	protein-coding
72522	chr15	34209451	34210750	+	0	NA	promoter-TSS (NM_024713)	promoter-TSS (NM_024713)	-4	NM_024713	79768		NM_024713	ENSG00000134152	KATNBL1	C15orf29	katanin regulatory subunit B1 like 1	protein-coding
134218	chr2	134676901	134677280	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	41910	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
117437	chr19	19651451	19652230	+	0	NA	intron (NM_020410, intron 16 of 25)	intron (NM_020410, intron 16 of 25)	-8183	NM_001288999	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
236231	chrX	65720321	65721230	+	0	NA	intron (NM_002444, intron 2 of 12)	intron (NM_002444, intron 2 of 12)	53121	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
35322	chr11	1035171	1035530	+	0	NA	intron (NM_005961, intron 1 of 32)	intron (NM_005961, intron 1 of 32)	1368	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
121341	chr19	46787301	46788000	+	0	NA	promoter-TSS (NM_001145144)	promoter-TSS (NM_001145144)	-357	NM_001145144	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
235787	chrX	49155501	49157000	+	0	NA	Intergenic	Intergenic	-6593	NM_001099682	79917		NM_024859	ENSG00000269313	MAGIX	JM10|PDZX	MAGI family member, X-linked	protein-coding
105789	chr18	2891051	2891150	+	0	NA	exon (NM_032048, exon 4 of 8)	exon (NM_032048, exon 4 of 8)	44094	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
95221	chr17	35253871	35254830	+	0	NA	intron (NM_144975, intron 1 of 4)	HAL1|LINE|L1	11278	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
91229	chr17	3934051	3934350	+	0	NA	intron (NM_174953, intron 17 of 22)	AluSx1|SINE|Alu	-17735	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
34740	chr10	133765371	133765530	+	0	NA	Intergenic	(GTTAGG)n|Simple_repeat|Simple_repeat	-138655	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
158236	chr22	50285071	50285830	+	0	NA	intron (NM_001376865, intron 11 of 37)	CpG	14885	NM_001376883	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
187959	chr5	149356471	149356630	+	0	NA	intron (NR_132366, intron 1 of 1)	intron (NR_132366, intron 1 of 1)	1092	NR_132366	106144529		NR_132366	ENSG00000253618	GRPEL2-AS1	-	GRPEL2 antisense RNA 1	ncRNA
74983	chr15	63895201	63895600	+	0	NA	Intergenic	L2c|LINE|L2	-24381	NR_029944	494334		NR_029944	ENSG00000199156	MIR422A	MIRN422A	microRNA 422a	ncRNA
119639	chr19	40805521	40805880	+	0	NA	intron (NM_053046, intron 2 of 5)	intron (NM_053046, intron 2 of 5)	5400	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
1694	chr1	4656251	4656550	+	0	NA	intron (NM_018836, intron 1 of 5)	CpG	1791	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
207122	chr7	42887721	42889300	+	0	NA	Intergenic	Intergenic	23333	NM_001363436	79020		NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
188066	chr5	150057171	150057530	+	0	NA	exon (NM_001349736, exon 18 of 23)	exon (NM_001349736, exon 18 of 23)	29204	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
159926	chr3	17006101	17006700	+	0	NA	intron (NM_015184, intron 1 of 5)	intron (NM_015184, intron 1 of 5)	73204	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
232929	chr9	136899101	136899300	+	0	NA	intron (NM_021138, intron 2 of 10)	Charlie5|DNA|hAT-Charlie	12467	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
102927	chr17	76583371	76583930	+	0	NA	intron (NM_006456, intron 1 of 8)	MER66B|LTR|ERV1	2210	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
168745	chr3	151168221	151169100	+	0	NA	intron (NM_053002, intron 10 of 42)	intron (NM_053002, intron 10 of 42)	34556	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
189407	chr5	172769911	172771800	+	0	NA	exon (NM_004417, exon 1 of 4)	exon (NM_004417, exon 1 of 4)	340	NM_004417	1843		NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
212008	chr7	114825401	114825700	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-96604	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
142398	chr20	3846201	3848080	+	0	NA	intron (NM_001385663, intron 1 of 7)	CpG	306	NM_020746	57506		NM_020746	ENSG00000088888	MAVS	CARDIF|IPS-1|IPS1|VISA	mitochondrial antiviral signaling protein	protein-coding
66332	chr14	61431301	61432200	+	0	NA	intron (NM_006255, intron 2 of 13)	L1MEd|LINE|L1	110307	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
207297	chr7	44014251	44014780	+	0	NA	intron (NR_003655, intron 3 of 15)	intron (NR_003655, intron 3 of 15)	4679	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
129903	chr2	73232421	73233700	+	0	NA	intron (NM_032319, intron 1 of 4)	CpG	179	NM_032319	84279		NM_032319	ENSG00000135617	PRADC1	C2orf7|PAP21	protease associated domain containing 1	protein-coding
137299	chr2	195579871	195580350	+	0	NA	Intergenic	Intergenic	-76848	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
201486	chr6	148890471	148891230	+	0	NA	intron (NM_005715, intron 2 of 7)	intron (NM_005715, intron 2 of 7)	73834	NR_038408	100128176		NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA
83106	chr16	22470451	22470750	+	0	NA	intron (NR_027154, intron 10 of 28)	intron (NR_027154, intron 10 of 28)	-32885	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
115	chr1	489421	489900	+	0	NA	Intergenic	Intergenic	5785	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
177079	chr4	108055901	108056100	+	0	NA	intron (NM_001130714, intron 9 of 9)	MLT1O|LTR|ERVL-MaLR	51336	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
5230	chr1	24997301	24998080	+	0	NA	Intergenic	Intergenic	-25813	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
188098	chr5	150359271	150359700	+	0	NA	intron (NM_001371623, intron 1 of 26)	intron (NM_001371623, intron 1 of 26)	1788	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
96807	chr17	41920351	41920950	+	0	NA	Intergenic	AluJo|SINE|Alu	-1628	NM_001303274	47		NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
55628	chr12	107032301	107032600	+	0	NA	intron (NM_004075, intron 1 of 12)	intron (NM_004075, intron 1 of 12)	-45284	NM_025198	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
180310	chr5	5493771	5493930	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	71173	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
232194	chr9	134319471	134319830	+	0	NA	Intergenic	Intergenic	-6805	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
211742	chr7	107175221	107176300	+	0	NA	intron (NM_012257, intron 1 of 10)	AluY|SINE|Alu	6757	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
93583	chr17	19114651	19114950	+	0	NA	Intergenic	L1M4|LINE|L1	-2164	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
129653	chr2	70223271	70223430	+	0	NA	intron (NR_147231, intron 7 of 12)	intron (NR_147231, intron 7 of 12)	25278	NM_022037	7072		NM_022037	ENSG00000116001	TIA1	ALS26|TIA-1|WDM	TIA1 cytotoxic granule associated RNA binding protein	protein-coding
7000	chr1	31866421	31866680	+	0	NA	Intergenic	MER49|LTR|ERV1	-50499	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
149888	chr21	36004871	36005230	+	0	NA	promoter-TSS (NR_110418)	promoter-TSS (NR_110418)	-270	NR_110419	100996609		NR_110419		LINC01436	-	long intergenic non-protein coding RNA 1436	ncRNA
14998	chr1	148146921	148147380	+	0	NA	intron (NM_001385469, intron 1 of 23)	intron (NM_001385469, intron 1 of 23)	5131	NM_001101663	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
230925	chr9	129346301	129346900	+	0	NA	intron (NR_120686, intron 3 of 3)	AluSz|SINE|Alu	9677	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
227546	chr9	91798101	91799380	+	0	NA	intron (NM_001318204, intron 1 of 7)	intron (NM_001318204, intron 1 of 7)	151488	NM_004560	4920		NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
86755	chr16	67655401	67655800	+	0	NA	intron (NM_001317026, intron 33 of 37)	intron (NM_001317026, intron 33 of 37)	4660	NM_001082486	65057		NM_022914	ENSG00000102977	ACD	PIP1|PTOP|TINT1|TPP1	ACD shelterin complex subunit and telomerase recruitment factor	protein-coding
208416	chr7	66746421	66747080	+	0	NA	intron (NM_001367749, intron 1 of 4)	AluSz6|SINE|Alu	6017	NM_001367735	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
54600	chr12	92537671	92538350	+	0	NA	Intergenic	AluSx1|SINE|Alu	71331	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
154735	chr22	36470021	36471130	+	0	NA	intron (NM_012473, intron 3 of 3)	intron (NM_012473, intron 3 of 3)	11065	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
75613	chr15	67124921	67125380	+	0	NA	promoter-TSS (NM_001145102)	promoter-TSS (NM_001145102)	-566	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
220775	chr8	102492021	102492280	+	0	NA	intron (NR_168428, intron 4 of 4)	intron (NR_168428, intron 4 of 4)	-59439	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
172177	chr4	1233821	1234630	+	0	NA	intron (NM_001377193, intron 3 of 9)	intron (NM_001377193, intron 3 of 9)	14503	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
234388	chrX	16528301	16529100	+	0	NA	Intergenic	Intergenic	98385	NR_039762	100616428		NR_039762	ENSG00000265144	MIR548AM	-	microRNA 548am	ncRNA
41395	chr11	66010521	66010780	+	0	NA	Intergenic	Intergenic	-1358	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
132944	chr2	111453371	111453900	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	41526	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
164246	chr3	57162321	57162580	+	0	NA	intron (NM_001318864, intron 2 of 13)	intron (NM_001318864, intron 2 of 13)	2903	NM_017563	54756		NM_017563	ENSG00000144730	IL17RD	HH18|IL-17RD|IL17RLM|SEF	interleukin 17 receptor D	protein-coding
187731	chr5	143432571	143432730	+	0	NA	intron (NM_001018075, intron 1 of 8)	intron (NM_001018075, intron 1 of 8)	2159	NM_001364183	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
153255	chr22	24104451	24104850	+	0	NA	intron (NM_012295, intron 26 of 36)	intron (NM_012295, intron 26 of 36)	-76837	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
79842	chr16	1446551	1446650	+	0	NA	3' UTR (NM_001287, exon 25 of 25)	3' UTR (NM_001287, exon 25 of 25)	-2111	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
169102	chr3	155124801	155125300	+	0	NA	intron (NM_007289, intron 8 of 22)	L1PA2|LINE|L1	44731	NM_007289	4311		NM_000902	ENSG00000196549	MME	CALLA|CD10|CMT2T|NEP|SCA43|SFE	membrane metalloendopeptidase	protein-coding
53411	chr12	64755101	64755730	+	0	NA	intron (NM_002076, intron 1 of 13)	AluSx1|SINE|Alu	3991	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
228241	chr9	97950851	97951230	+	0	NA	Intergenic	L1PA6|LINE|L1	-6188	NM_018437	55363		NM_018437	ENSG00000136929	HEMGN	CT155|EDAG|EDAG-1|NDR	hemogen	protein-coding
196832	chr6	47047571	47047730	+	0	NA	Intergenic	Intergenic	-5318	NM_025048	266977		NM_025048	ENSG00000153292	ADGRF1	GPR110|KPG_012|PGR19|hGPCR36	adhesion G protein-coupled receptor F1	protein-coding
202242	chr6	156866171	156866700	+	0	NA	intron (NM_017519, intron 2 of 18)	HAL1|LINE|L1	-86704	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
213577	chr7	139358571	139360000	+	0	NA	promoter-TSS (NM_001270643)	promoter-TSS (NM_001270643)	-561	NM_001270643	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
117868	chr19	32571321	32571780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-9640	NM_004708	9141		NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
10098	chr1	58942851	58943250	+	0	NA	Intergenic	Intergenic	-77426	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
3514	chr1	16052471	16052630	+	0	NA	intron (NM_000085, intron 15 of 19)	MIR1_Amn|SINE|MIR	3788	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
107094	chr18	35046251	35046350	+	0	NA	intron (NR_046177, intron 1 of 6)	Tigger19a|DNA|TcMar-Tigger	4887	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
11796	chr1	92563451	92563780	+	0	NA	intron (NM_001377213, intron 20 of 20)	intron (NM_001377213, intron 20 of 20)	-76690	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
100888	chr17	64388271	64388630	+	0	NA	intron (NM_000442, intron 2 of 15)	MIR|SINE|MIR	2410	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
216519	chr8	20436671	20437550	+	0	NA	Intergenic	Intergenic	-133147	NM_021020	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
7490	chr1	33238471	33238630	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-17942	NM_152493	149076		NM_152493	ENSG00000160094	ZNF362	RN|lin-29	zinc finger protein 362	protein-coding
206003	chr7	26205601	26206130	+	0	NA	intron (NM_016587, intron 2 of 5)	AluSz|SINE|Alu	4120	NM_016587	11335		NM_007276	ENSG00000122565	CBX3	HECH|HP1-GAMMA|HP1Hs-gamma|HP1gamma	chromobox 3	protein-coding
41360	chr11	65969851	65970150	+	0	NA	intron (NM_005146, intron 12 of 19)	AluSg|SINE|Alu	8266	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
144184	chr20	34114001	34115200	+	0	NA	Intergenic	AluSp|SINE|Alu	-2357	NM_001316364	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
119701	chr19	41123471	41124300	+	0	NA	intron (NM_000774, intron 7 of 9)	intron (NM_000774, intron 7 of 9)	9453	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
129754	chr2	70993201	70993600	+	0	NA	intron (NM_144582, intron 2 of 5)	intron (NM_144582, intron 2 of 5)	1473	NM_144582	113419		NM_144582	ENSG00000144043	TEX261	TEG-261	testis expressed 261	protein-coding
161991	chr3	46366321	46366780	+	0	NA	intron (NR_125406, intron 3 of 3)	intron (NR_125406, intron 3 of 3)	-3592	NM_000579	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
112725	chr19	7269151	7269250	+	0	NA	intron (NM_001079817, intron 1 of 20)	intron (NM_001079817, intron 1 of 20)	25214	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
90867	chr17	2373971	2374130	+	0	NA	intron (NM_001346700, intron 16 of 22)	intron (NM_001346700, intron 16 of 22)	27010	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
189922	chr5	177372001	177374080	+	0	NA	TTS (NM_001366618)	TTS (NM_001366618)	-11394	NM_001167579	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
158062	chr22	49953901	49954100	+	0	NA	Intergenic	Intergenic	-6772	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
220466	chr8	100426201	100427350	+	0	NA	Intergenic	(CAC)n|Simple_repeat|Simple_repeat	44012	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
7606	chr1	35285801	35286650	+	0	NA	intron (NM_001375653, intron 1 of 29)	L1M3|LINE|L1	17516	NM_001350139	9202		NM_005095	ENSG00000146463	ZMYM4	CDIR|MYM|ZNF198L3|ZNF262	zinc finger MYM-type containing 4	protein-coding
188232	chr5	150904671	150905230	+	0	NA	promoter-TSS (NM_052860)	promoter-TSS (NM_052860)	33	NM_001172832	91975		NM_052860	ENSG00000145908	ZNF300	-	zinc finger protein 300	protein-coding
118454	chr19	35869601	35870300	+	0	NA	intron (NM_001024807, intron 2 of 16)	intron (NM_001024807, intron 2 of 16)	1376	NM_001024807	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
209159	chr7	75235621	75236000	+	0	NA	intron (NR_002206, intron 1 of 23).2	intron (NR_002206, intron 1 of 23).2	-1377	NM_001382505	643862		NM_001382504	ENSG00000274570	SPDYE10	SPDYE10P	speedy/RINGO cell cycle regulator family member E10	protein-coding
102402	chr17	75593071	75593430	+	0	NA	intron (NM_001309242, intron 8 of 62)	AluJb|SINE|Alu	5192	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
139157	chr2	219168771	219168930	+	0	NA	intron (NM_144712, intron 4 of 10)	intron (NM_144712, intron 4 of 10)	1179	NM_144712	151295		NM_144712	ENSG00000213901	SLC23A3	E2BP3|SVCT3|Yspl1	solute carrier family 23 member 3	protein-coding
128401	chr2	55168451	55168780	+	0	NA	Intergenic	Intergenic	-30784	NM_001321904	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
31622	chr10	97380271	97380430	+	0	NA	intron (NM_015179, intron 13 of 33)	intron (NM_015179, intron 13 of 33)	20990	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
167793	chr3	133487901	133488430	+	0	NA	intron (NR_135276, intron 1 of 4)	intron (NR_135276, intron 1 of 4)	2981	NR_135277	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
175614	chr4	75995521	75996300	+	0	NA	intron (NR_125906, intron 1 of 2)	AluJr4|SINE|Alu	-4948	NM_001288983	55153		NM_018115	ENSG00000198301	SDAD1	Sda1	SDA1 domain containing 1	protein-coding
23128	chr1	226698801	226699480	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-24072	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
11261	chr1	89040721	89041450	+	0	NA	Intergenic	Intergenic	-18219	NM_001319180	2635		NM_018284	ENSG00000117226	GBP3	-	guanylate binding protein 3	protein-coding
15269	chr1	149686601	149687080	+	0	NA	Intergenic	MER66C|LTR|ERV1	-14264	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
211546	chr7	105444321	105444880	+	0	NA	Intergenic	L1MB8|LINE|L1	-55210	NM_001350740	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
226152	chr9	63708121	63708380	+	0	NA	Intergenic	GSATII|Satellite|centr	-104691	NR_146625	203274		NR_146625		LINC00537	-	long intergenic non-protein coding RNA 537	ncRNA
39509	chr11	61062771	61063080	+	0	NA	Intergenic	Intergenic	-31038	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
235802	chrX	49187551	49187650	+	0	NA	TTS (NM_003179)	TTS (NM_003179)	-1227	NM_006150	4007		NM_006150	ENSG00000012211	PRICKLE3	LMO6|LOAM|LOAS|Pk3	prickle planar cell polarity protein 3	protein-coding
178890	chr4	156971701	156972050	+	0	NA	promoter-TSS (NR_036641)	promoter-TSS (NR_036641)	-76	NM_016205	56034		NM_016205	ENSG00000145431	PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
65763	chr14	54394351	54395130	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2128	NM_001330173	1033		NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
23821	chr1	234491071	234491230	+	0	NA	Intergenic	Intergenic	-11971	NM_005646	6894		NM_005646	ENSG00000059588	TARBP1	TRM3|TRMT3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
227742	chr9	93082871	93084130	+	0	NA	intron (NM_001287005, intron 5 of 5)	intron (NM_001287005, intron 5 of 5)	-12717	NM_032310	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
64488	chr14	24313051	24313730	+	0	NA	5' UTR (NM_181657, exon 1 of 2)	5' UTR (NM_181657, exon 1 of 2)	283	NM_181657	1241		NM_181657	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
181933	chr5	54905871	54906580	+	0	NA	Intergenic	Intergenic	79368	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
165230	chr3	73003301	73003500	+	0	NA	intron (NM_001318025, intron 2 of 7)	AluSz6|SINE|Alu	6589	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
42442	chr11	69301021	69301280	+	0	NA	Intergenic	Intergenic	6995	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
123849	chr19	55240851	55241380	+	0	NA	intron (NM_014931, intron 9 of 23)	intron (NM_014931, intron 9 of 23)	-1139	NR_106860	102465481		NR_106860	ENSG00000278328	MIR6802	hsa-mir-6802	microRNA 6802	ncRNA
210643	chr7	100471071	100471530	+	0	NA	intron (NM_001303043, intron 3 of 4)	intron (NM_001303043, intron 3 of 4)	-7040	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
101225	chr17	65741821	65742150	+	0	NA	intron (NR_126542, intron 2 of 5)	intron (NR_126542, intron 2 of 5)	84466	NM_001037325	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
175713	chr4	77193221	77194080	+	0	NA	Intergenic	Intergenic	36443	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
49747	chr12	31731001	31731200	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-1926	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
60549	chr13	41474221	41475380	+	0	NA	Intergenic	L1PA7|LINE|L1	17250	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
167694	chr3	130699771	130700050	+	0	NA	intron (NM_014602, intron 13 of 19)	L1ME4a|LINE|L1	46919	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
113188	chr19	8411521	8411780	+	0	NA	Intergenic	AluJr|SINE|Alu	-1653	NM_001005415	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
51964	chr12	53791871	53792100	+	0	NA	Intergenic	Intergenic	-34951	NR_104332	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
172924	chr4	3506271	3506430	+	0	NA	non-coding (NR_110005, exon 8 of 8)	non-coding (NR_110005, exon 8 of 8)	21806	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
187812	chr5	146580751	146580850	+	0	NA	TTS (NM_181675)	TTS (NM_181675)	-64610	NM_194251	134391		NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|GPCR-2037|PGR7	G protein-coupled receptor 151	protein-coding
222797	chr8	142401471	142401630	+	0	NA	intron (NM_145003, intron 1 of 13)	intron (NM_145003, intron 1 of 13)	1632	NM_001366901	203062		NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
170195	chr3	183883401	183883600	+	0	NA	intron (NM_001037639, intron 1 of 8)	AluSx1|SINE|Alu	1380	NM_001324437	55486		NM_018622	ENSG00000175193	PARL	PRO2207|PSARL|PSARL1|PSENIP2|RHBDS1	presenilin associated rhomboid like	protein-coding
210744	chr7	100652421	100653230	+	0	NA	intron (NR_134539, intron 4 of 13)	AluSc|SINE|Alu	3623	NR_134539	51412		NM_016188	ENSG00000077080	ACTL6B	ACTL6|BAF53B|DEE76|EIEE76|IDDSSAD|SMARCN2|arpNalpha	actin like 6B	protein-coding
171708	chr3	197847721	197849030	+	0	NA	intron (NM_001365715, intron 12 of 20)	intron (NM_001365715, intron 12 of 20)	57121	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
98844	chr17	48438051	48438880	+	0	NA	Intergenic	Intergenic	-6368	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
76689	chr15	75738251	75739750	+	0	NA	non-coding (NR_024595, exon 2 of 5)	non-coding (NR_024595, exon 2 of 5)	1077	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
237938	chrX	132474771	132475150	+	0	NA	intron (NM_001170704, intron 1 of 8)	L2|LINE|L2	15075	NM_001170704	55796		NM_018388	ENSG00000076770	MBNL3	CHCR|MBLX|MBLX39|MBXL	muscleblind like splicing regulator 3	protein-coding
196711	chr6	44968701	44968900	+	0	NA	intron (NM_001350327, intron 5 of 9)	intron (NM_001350327, intron 5 of 9)	228970	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
115828	chr19	16493271	16493630	+	0	NA	intron (NM_145046, intron 2 of 8)	LTR24B|LTR|ERV1	2717	NM_145046	125972		NM_145046	ENSG00000269058	CALR3	CMH19|CRT2|CT93	calreticulin 3	protein-coding
23783	chr1	233356451	233356750	+	0	NA	intron (NM_032435, intron 4 of 9)	L1ME3Cz|LINE|L1	28876	NM_032435	84451		NM_032435	ENSG00000143674	MAP3K21	MLK4|dJ862P8.3	mitogen-activated protein kinase kinase kinase 21	protein-coding
11592	chr1	91569371	91570130	+	0	NA	Intergenic	Intergenic	68642	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
165384	chr3	94043271	94044300	+	0	NA	intron (NM_144996, intron 5 of 7)	SVA_A|Retroposon|SVA	-15188	NM_001001850	415117		NM_001001850	ENSG00000178750	STX19	-	syntaxin 19	protein-coding
121868	chr19	48290651	48291560	+	0	NA	Intergenic	CpG	19818	NM_001369812	163071		NM_153608	ENSG00000178150	ZNF114	-	zinc finger protein 114	protein-coding
12196	chr1	100380671	100381350	+	0	NA	intron (NM_001319210, intron 3 of 16)	L2c|LINE|L2	28504	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
13131	chr1	111650621	111651300	+	0	NA	intron (NM_001010935, intron 2 of 8)	AluY|SINE|Alu	-13834	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
165017	chr3	71391951	71392650	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-87529	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
231045	chr9	129622921	129623500	+	0	NA	intron (NM_001286797, intron 1 of 3)	AluY|SINE|Alu	-2434	NM_199350	375759		NM_199350	ENSG00000179058	C9orf50	-	chromosome 9 open reading frame 50	protein-coding
143503	chr20	31502671	31503900	+	0	NA	Intergenic	Intergenic	-11125	NM_178580	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
43066	chr11	74492551	74494040	+	0	NA	promoter-TSS (NM_001319240)	promoter-TSS (NM_001319240)	-90	NM_001319240	100287896		NM_198519	ENSG00000254837	LIPT2-AS1	-	LIPT2 antisense RNA 1	ncRNA
84525	chr16	30520771	30521150	+	0	NA	intron (NM_002209, intron 30 of 30)	AluSp|SINE|Alu	5606	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
71313	chr14	105369151	105369450	+	0	NA	intron (NM_001100913, intron 7 of 24)	intron (NM_001100913, intron 7 of 24)	-29238	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
92933	chr17	16845421	16845730	+	0	NA	non-coding (NR_146392, exon 1 of 7)	non-coding (NR_146392, exon 1 of 7)	297	NR_146392	147228		NM_001349721		KRT17P1	-	keratin 17 pseudogene 1	pseudo
31275	chr10	92293371	92294180	+	0	NA	intron (NM_017824, intron 1 of 5)	AluSz|SINE|Alu	2608	NM_017824	54708		NM_017824	ENSG00000198060	MARCHF5	MARCH-V|MARCH5|MITOL|RNF153	membrane associated ring-CH-type finger 5	protein-coding
91905	chr17	7303871	7304230	+	0	NA	Intergenic	AluSp|SINE|Alu	-2949	NM_001143760	1984		NM_001970	ENSG00000132507	EIF5A	EIF-5A|EIF5A1|FABAS|eIF-4D|eIF5AI	eukaryotic translation initiation factor 5A	protein-coding
45695	chr11	119069351	119070100	+	0	NA	intron (NR_165447, intron 3 of 15).2	AluSp|SINE|Alu	1712	NM_001378221	55823		NM_021729	ENSG00000160695	VPS11	END1|HLD12|HLD12; DYT32|PEP5|RNF108|hVPS11	VPS11 core subunit of CORVET and HOPS complexes	protein-coding
195201	chr6	36113921	36114280	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-16413	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
223824	chr8	144895501	144895700	+	0	NA	intron (NM_001363102, intron 1 of 6)	intron (NM_001363102, intron 1 of 6)	4705	NM_001363103	58500		NM_021061	ENSG00000196150	ZNF250	ZFP647|ZNF647	zinc finger protein 250	protein-coding
172199	chr4	1266401	1266600	+	0	NA	Intergenic	Intergenic	-16145	NM_001377192	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
116255	chr19	17608851	17609900	+	0	NA	intron (NM_001080421, intron 41 of 41)	intron (NM_001080421, intron 41 of 41)	53726	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
225184	chr9	34011001	34011350	+	0	NA	intron (NR_163243, intron 1 of 24)	intron (NR_163243, intron 1 of 24)	37712	NM_001370064	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
237074	chrX	103678871	103679600	+	0	NA	intron (NM_001142419, intron 2 of 3)	AluSx3|SINE|Alu	7464	NM_012286	9643		NM_012286	ENSG00000123562	MORF4L2	MORFL2|MRGX	mortality factor 4 like 2	protein-coding
213599	chr7	139390701	139390900	+	0	NA	intron (NM_016019, intron 2 of 9)	AluY|SINE|Alu	30906	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
13838	chr1	117635771	117636130	+	0	NA	Intergenic	Intergenic	29902	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
176203	chr4	83630271	83630430	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	94242	NM_032717	84803		NM_032717	ENSG00000138678	GPAT3	AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1	glycerol-3-phosphate acyltransferase 3	protein-coding
12358	chr1	101237901	101238400	+	0	NA	intron (NM_001400, intron 1 of 1)	intron (NM_001400, intron 1 of 1)	1131	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
234626	chrX	19866171	19866930	+	0	NA	intron (NM_001353892, intron 1 of 17)	AluJr4|SINE|Alu	21050	NM_001353891	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
121896	chr19	48373101	48373300	+	0	NA	intron (NM_012451, intron 2 of 4)	intron (NM_012451, intron 2 of 4)	8833	NM_012451	23546		NM_012451	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding
45660	chr11	119017221	119017600	+	0	NA	exon (NM_001028, exon 3 of 5).2	exon (NM_001028, exon 3 of 5).2	933	NM_001028	6230		NM_001028	ENSG00000118181	RPS25	S25|eS25	ribosomal protein S25	protein-coding
134120	chr2	134127251	134128150	+	0	NA	TTS (NR_037450)	TTS (NR_037450)	575	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
172042	chr4	1005121	1005380	+	0	NA	TTS (NM_000203)	TTS (NM_000203)	5540	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
1021	chr1	1865271	1865830	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSc8|SINE|Alu	25537	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
56886	chr12	120303801	120304430	+	0	NA	intron (NM_012240, intron 2 of 3)	intron (NM_012240, intron 2 of 3)	1794	NM_012240	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
121437	chr19	47030171	47030950	+	0	NA	intron (NM_002517, intron 3 of 11)	AluJo|SINE|Alu	-4757	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
195080	chr6	35568601	35569300	+	0	NA	Intergenic	Intergenic	-56054	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
207279	chr7	43985571	43986700	+	0	NA	intron (NR_003655, intron 7 of 15)	intron (NR_003655, intron 7 of 15)	-11733	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
137277	chr2	195477621	195477880	+	0	NA	Intergenic	L1PA16|LINE|L1	-179208	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
110729	chr19	2319601	2319830	+	0	NA	Intergenic	Intergenic	8871	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
216471	chr8	19716051	19716550	+	0	NA	intron (NM_001354475, intron 1 of 9)	intron (NM_001354475, intron 1 of 9)	-33539	NR_024040	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
117341	chr19	19530251	19530450	+	0	NA	intron (NM_198537, intron 2 of 6)	intron (NM_198537, intron 2 of 6)	1439	NM_198537	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
37888	chr11	34050901	34051800	+	0	NA	promoter-TSS (NM_005898)	promoter-TSS (NM_005898)	-381	NM_005898	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
24345	chr1	239811251	239811550	+	0	NA	intron (NM_001375983, intron 5 of 6)	intron (NM_001375983, intron 5 of 6)	88472	NR_046582	100873984		NR_046582	ENSG00000234601	CHRM3-AS1	-	CHRM3 antisense RNA 1	ncRNA
220498	chr8	100561601	100561800	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-1941	NM_001270377	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
175136	chr4	55395301	55396880	+	0	NA	non-coding (NR_073070, exon 1 of 7)	non-coding (NR_073070, exon 1 of 7)	133	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
30125	chr10	74032451	74032750	+	0	NA	intron (NM_014000, intron 1 of 21)	AluSx|SINE|Alu	34484	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
72726	chr15	38688351	38689450	+	0	NA	Intergenic	LTR8|LTR|ERV1	-7698	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
63921	chr14	21990121	21990780	+	0	NA	Intergenic	Intergenic	-319433	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
177097	chr4	108074701	108074900	+	0	NA	intron (NM_016269, intron 8 of 11)	intron (NM_016269, intron 8 of 11)	70136	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
236423	chrX	71288571	71288730	+	0	NA	intron (NM_001145408, intron 3 of 12)	AluSp|SINE|Alu	5015	NM_001145408	4841		NM_007363	ENSG00000147140	NONO	MRXS34|NMT55|NRB54|P54|P54NRB|PPP1R114	non-POU domain containing octamer binding	protein-coding
28409	chr10	47744901	47745600	+	0	NA	3' UTR (NM_001370186, exon 6 of 6)	3' UTR (NM_001370186, exon 6 of 6)	1551	NR_134489	102724593		NR_134489		LOC102724593	-	uncharacterized LOC102724593	ncRNA
51328	chr12	51341021	51342150	+	0	NA	intron (NM_001971, intron 4 of 7)	intron (NM_001971, intron 4 of 7)	5094	NM_001971	1990		NM_001971	ENSG00000139610	CELA1	ELA1	chymotrypsin like elastase 1	protein-coding
37181	chr11	14075021	14075680	+	0	NA	exon (NM_006108, exon 4 of 16)	exon (NM_006108, exon 4 of 16)	112627	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
102174	chr17	75142301	75142850	+	0	NA	intron (NM_001002032, intron 3 of 3)	G-rich|Low_complexity|Low_complexity	10718	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
205162	chr7	7248801	7249200	+	0	NA	TTS (NM_020156)	TTS (NM_020156)	-6154	NR_108073	101927354		NR_108073	ENSG00000230825	LINC03016	-	long intergenic non-protein coding RNA 3016	ncRNA
2370	chr1	9368351	9368650	+	0	NA	3' UTR (NM_025106, exon 3 of 3)	3' UTR (NM_025106, exon 3 of 3)	60416	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
208325	chr7	66151401	66151900	+	0	NA	intron (NM_001142414, intron 4 of 4)	intron (NM_001142414, intron 4 of 4)	36803	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
189044	chr5	169663521	169663780	+	0	NA	intron (NR_156756, intron 2 of 52)	THE1D-int|LTR|ERVL-MaLR	26375	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
58032	chr12	124437271	124437430	+	0	NA	intron (NM_001077261, intron 10 of 47)	intron (NM_001077261, intron 10 of 47)	-100108	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
166352	chr3	112981721	112982180	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-6847	NM_170780	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
164122	chr3	56702561	56703450	+	0	NA	Intergenic	Intergenic	-19740	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
78067	chr15	90157921	90158480	+	0	NA	Intergenic	Intergenic	-26720	NM_020210	10509		NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
68263	chr14	77035101	77036200	+	0	NA	Intergenic	Intergenic	-1444	NR_169510	105370579		NR_169510		LOC105370579	-	uncharacterized LOC105370579	ncRNA
147362	chr20	58395621	58395880	+	0	NA	intron (NM_001195677, intron 1 of 2)	intron (NM_001195677, intron 1 of 2)	6521	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
18769	chr1	167508851	167508950	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	9629	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
189450	chr5	172999371	172999730	+	0	NA	intron (NM_003945, intron 2 of 3)	AluJo|SINE|Alu	15779	NM_003945	8992		NM_003945	ENSG00000113732	ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase H+ transporting V0 subunit e1	protein-coding
117847	chr19	31372151	31372550	+	0	NA	Intergenic	L3|LINE|CR1	-22914	NR_138035	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
41870	chr11	67230151	67230950	+	0	NA	intron (NM_012308, intron 11 of 20)	AluJr|SINE|Alu	-9464	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
47311	chr12	1698801	1699000	+	0	NA	intron (NM_001375365, intron 1 of 7).2	intron (NM_001375365, intron 1 of 7).2	7830	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
67172	chr14	68806821	68807280	+	0	NA	Intergenic	Intergenic	-10807	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
18538	chr1	162071571	162071730	+	0	NA	intron (NM_014697, intron 1 of 9)	intron (NM_014697, intron 1 of 9)	1959	NM_001164757	9722		NM_014697	ENSG00000198929	NOS1AP	6330408P19Rik|CAPON|NPHS22	nitric oxide synthase 1 adaptor protein	protein-coding
122088	chr19	48740371	48740800	+	0	NA	promoter-TSS (NM_017805)	promoter-TSS (NM_017805)	25	NM_017805	54922		NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
114721	chr19	13169921	13170550	+	0	NA	Intergenic	Intergenic	19824	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
133486	chr2	119931351	119932030	+	0	NA	intron (NM_002830, intron 13 of 26)	AluJo|SINE|Alu	-81387	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
35104	chr11	642351	643730	+	0	NA	Intergenic	Intergenic	5771	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
197973	chr6	90004351	90004850	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	110131	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
74944	chr15	63769171	63769330	+	0	NA	intron (NM_003922, intron 2 of 77)	AluSx1|SINE|Alu	64698	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
202126	chr6	154800121	154800580	+	0	NA	intron (NM_001286199, intron 7 of 20)	intron (NM_001286199, intron 7 of 20)	-53010	NR_036100	100422821		NR_036100	ENSG00000264814	MIR1273C	-	microRNA 1273c	ncRNA
61580	chr13	72729221	72729850	+	0	NA	intron (NM_001366664, intron 2 of 9)	intron (NM_001366664, intron 2 of 9)	1612	NM_024808	79866		NM_024808	ENSG00000136122	BORA	C13orf34	BORA aurora kinase A activator	protein-coding
134773	chr2	147405601	147405830	+	0	NA	Intergenic	L1MD1|LINE|L1	-438802	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
169285	chr3	158112051	158112150	+	0	NA	intron (NM_001271838, intron 1 of 9)	intron (NM_001271838, intron 1 of 9)	2011	NM_001271838	51319		NM_016625	ENSG00000174891	RSRC1	BM-011|MRT70|SFRS21|SRrp53	arginine and serine rich coiled-coil 1	protein-coding
102620	chr17	75978721	75980380	+	0	NA	promoter-TSS (NM_007292)	promoter-TSS (NM_007292)	310	NM_001113324	100134934		NM_001113324	ENSG00000257949	TEN1	C17orf106	TEN1 subunit of CST complex	protein-coding
29085	chr10	67918701	67919100	+	0	NA	TTS (NM_012238)	TTS (NM_012238)	27498	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
1346	chr1	2482171	2482880	+	0	NA	intron (NM_001303013, intron 4 of 21)	intron (NM_001303013, intron 4 of 21)	6210	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
55827	chr12	108859271	108859430	+	0	NA	Intergenic	(CTTC)n|Simple_repeat|Simple_repeat	-1767	NM_001161330	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
96608	chr17	40549071	40549450	+	0	NA	Intergenic	Intergenic	11134	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
70552	chr14	102544351	102545730	+	0	NA	promoter-TSS (NR_146561)	promoter-TSS (NR_146561)	-214	NR_146561	105370681		NR_146561	ENSG00000259230	LINC02323	-	long intergenic non-protein coding RNA 2323	ncRNA
136350	chr2	176071571	176071730	+	0	NA	Intergenic	CpG	12312	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
123876	chr19	55282151	55282900	+	0	NA	Intergenic	L2a|LINE|L2	-1472	NM_032430	84446		NM_032430	ENSG00000160469	BRSK1	SAD-B|hSAD1	BR serine/threonine kinase 1	protein-coding
39421	chr11	60868451	60868950	+	0	NA	intron (NM_207341, intron 1 of 11)	intron (NM_207341, intron 1 of 11)	1158	NM_207341	22917		NM_207341	ENSG00000149506	ZP1	HEL163|OOMD|OOMD1|OZEMA1|ZPB1	zona pellucida glycoprotein 1	protein-coding
79211	chr16	356671	357230	+	0	NA	Intergenic	Intergenic	-4227	NM_181050	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
28670	chr10	60572471	60573030	+	0	NA	5' UTR (NM_001204404, exon 1 of 44)	5' UTR (NM_001204404, exon 1 of 44)	206	NM_001204404	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
119382	chr19	40219571	40220350	+	0	NA	Intergenic	MIR|SINE|MIR	-1561	NM_152479	148014		NM_152479	ENSG00000174521	TTC9B	-	tetratricopeptide repeat domain 9B	protein-coding
73165	chr15	41480501	41480700	+	0	NA	exon (NM_015138, exon 18 of 18)	exon (NM_015138, exon 18 of 18)	-13274	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
89036	chr16	88428351	88428450	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-24880	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
31755	chr10	97848921	97850830	+	0	NA	promoter-TSS (NR_108035)	promoter-TSS (NR_108035)	32	NM_001010917	401647		NM_001010917	ENSG00000155265	GOLGA7B	C10orf132|C10orf133|bA451M19.3|bA459F3.4	golgin A7 family member B	protein-coding
124923	chr2	8539671	8539830	+	0	NA	Intergenic	Intergenic	44042	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
52344	chr12	55036351	55036650	+	0	NA	Intergenic	Intergenic	16526	NM_021191	58158		NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding
48143	chr12	7913881	7915100	+	0	NA	Intergenic	AluY|SINE|Alu	21697	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
211579	chr7	105693151	105693250	+	0	NA	intron (NM_001385596, intron 3 of 11)	AluJr|SINE|Alu	-14038	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
69696	chr14	98175201	98176130	+	0	NA	Intergenic	(TCTGTC)n|Simple_repeat|Simple_repeat	-197541	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
205078	chr7	6640001	6640880	+	0	NA	intron (NM_001278559, intron 3 of 8)	MSTA|LTR|ERVL-MaLR	3122	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
70044	chr14	100115401	100115900	+	0	NA	intron (NM_016337, intron 3 of 13)	intron (NM_016337, intron 3 of 13)	5995	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
134674	chr2	144473371	144473750	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-46054	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
7228	chr1	32327321	32328050	+	0	NA	intron (NM_004964, intron 6 of 13)	intron (NM_004964, intron 6 of 13)	8548	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
105910	chr18	3445501	3445900	+	0	NA	intron (NM_174886, intron 2 of 3)	AluY|SINE|Alu	-1842	NM_173207	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
129115	chr2	65187271	65187930	+	0	NA	Intergenic	Intergenic	-40095	NM_001005386	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
73190	chr15	41506901	41507780	+	0	NA	intron (NM_206961, intron 9 of 18)	intron (NM_206961, intron 9 of 18)	6487	NM_002344	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
137026	chr2	190696971	190697130	+	0	NA	Intergenic	Intergenic	37892	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
112892	chr19	7628921	7631100	+	0	NA	promoter-TSS (NM_020196)	promoter-TSS (NM_020196)	217	NM_001171155	100131801		NM_001171155	ENSG00000229833	PET100	C19orf79|MC4DN12	PET100 cytochrome c oxidase chaperone	protein-coding
152812	chr22	21858201	21858750	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	9170	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
20639	chr1	199932021	199932300	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-95550	NM_003822	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
135232	chr2	159455351	159456000	+	0	NA	intron (NM_001289975, intron 3 of 35)	intron (NM_001289975, intron 3 of 35)	-159619	NR_110588	643072		NR_110587	ENSG00000224152	BAZ2B-AS1	lnc-BAZ2B	BAZ2B antisense RNA 1	ncRNA
23056	chr1	226625571	226625730	+	0	NA	Intergenic	L2|LINE|L2	49418	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
227597	chr9	92671601	92671900	+	0	NA	Intergenic	AluJb|SINE|Alu	-1619	NM_022755	64768		NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
158178	chr22	50221151	50222100	+	0	NA	exon (NM_020461, exon 16 of 25)	exon (NM_020461, exon 16 of 25)	20614	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
154656	chr22	36344051	36345150	+	0	NA	intron (NM_002473, intron 2 of 40)	intron (NM_002473, intron 2 of 40)	43367	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
163645	chr3	52142971	52143350	+	0	NA	intron (NM_001161580, intron 6 of 9)	intron (NM_001161580, intron 6 of 9)	11263	NM_015426	25886		NM_015426	ENSG00000164087	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
229781	chr9	125232021	125232930	+	0	NA	intron (NM_001174153, intron 6 of 7)	intron (NM_001174153, intron 6 of 7)	8868	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
184427	chr5	98935301	98936030	+	0	NA	intron (NR_151718, intron 1 of 3)	intron (NR_151718, intron 1 of 3)	6531	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
196442	chr6	43494571	43494730	+	0	NA	intron (NM_001350565, intron 2 of 10)	AluSz|SINE|Alu	4892	NM_001350567	93643		NM_080604	ENSG00000137221	TJAP1	PILT|TJP4	tight junction associated protein 1	protein-coding
51098	chr12	50031401	50031600	+	0	NA	Intergenic	AluSz|SINE|Alu	-5943	NM_001320004	29127		NM_013277	ENSG00000161800	RACGAP1	CDAN3B|CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
27742	chr10	35136751	35136850	+	0	NA	promoter-TSS (NM_183012)	promoter-TSS (NM_183012)	-982	NM_183012	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
16904	chr1	155874921	155875580	+	0	NA	intron (NM_152280, intron 2 of 3)	AluSx4|SINE|Alu	15683	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
50796	chr12	49055751	49056600	+	0	NA	intron (NM_003482, intron 1 of 54)	intron (NM_003482, intron 1 of 54)	4619	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
154906	chr22	37183251	37184030	+	0	NA	intron (NM_031910, intron 2 of 2)	MamTip2|DNA|hAT-Tip100	4607	NM_031910	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
205934	chr7	25940871	25941230	+	0	NA	Intergenic	Intergenic	8936	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
87113	chr16	68736901	68737680	+	0	NA	promoter-TSS (NM_001317186)	promoter-TSS (NM_001317186)	-2	NM_001317184	999		NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
28521	chr10	50410351	50410900	+	0	NA	intron (NM_147156, intron 6 of 10)	intron (NM_147156, intron 6 of 10)	-159109	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
207246	chr7	43810501	43810800	+	0	NA	Intergenic	LTR10F|LTR|ERV1	51970	NM_000712	644		NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA|BVRalpha	biliverdin reductase A	protein-coding
25650	chr10	8325371	8325730	+	0	NA	Intergenic	Intergenic	-57245	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
56201	chr12	111451551	111452730	+	0	NA	TTS (NM_001310121)	TTS (NM_001310121)	17278	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
99623	chr17	50563071	50563430	+	0	NA	intron (NM_198376, intron 1 of 34)	intron (NM_198376, intron 1 of 34)	-1142	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
82589	chr16	18798951	18799280	+	0	NA	intron (NM_015161, intron 1 of 5)	AluSx1|SINE|Alu	2255	NM_001313858	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
93052	chr17	17405901	17406300	+	0	NA	Intergenic	Intergenic	-70900	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
162593	chr3	48688051	48688850	+	0	NA	exon (NM_001005909, exon 6 of 6)	exon (NM_001005909, exon 6 of 6)	-2535	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
199035	chr6	111303551	111303650	+	0	NA	intron (NM_001372078, intron 31 of 31)	AluSx1|SINE|Alu	44261	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
219212	chr8	66668971	66669500	+	0	NA	intron (NR_161217, intron 1 of 1)	intron (NR_161217, intron 1 of 1)	1639	NM_001204173	100533105		NM_001204173	ENSG00000288602	C8orf44-SGK3	-	C8orf44-SGK3 readthrough	protein-coding
505	chr1	1197701	1198550	+	0	NA	TTS (NM_001130045)	TTS (NM_001130045)	8467	NM_148902	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
224322	chr9	6709751	6710330	+	0	NA	Intergenic	AluSc8|SINE|Alu	-10823	NM_001146696	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
117525	chr19	20333571	20333730	+	0	NA	Intergenic	L1M3a|LINE|L1	65704	NR_036053	100302179		NR_036053	ENSG00000238517	MIR1270	MIR1270-1|MIR1270-2|MIRN1270|hsa-mir-1270|hsa-mir-1270-1|mir-1270	microRNA 1270	ncRNA
13720	chr1	116791501	116791900	+	0	NA	Intergenic	AluJb|SINE|Alu	37270	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
168469	chr3	143120601	143122380	+	0	NA	exon (NM_004267, exon 2 of 2)	exon (NM_004267, exon 2 of 2)	1719	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
219983	chr8	89834601	89834830	+	0	NA	Intergenic	L1MB2|LINE|L1	-67153	NM_004337	734		NM_004337	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
198691	chr6	108079951	108080500	+	0	NA	Intergenic	L1PBa1|LINE|L1	-5484	NM_014028	28962		NM_014028	ENSG00000081087	OSTM1	GIPN|GL|HSPC019|OPTB5	osteoclastogenesis associated transmembrane protein 1	protein-coding
77000	chr15	78425501	78426300	+	0	NA	Intergenic	L1MA4|LINE|L1	-11531	NM_001354994	3658		NM_004136	ENSG00000136381	IREB2	ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA	iron responsive element binding protein 2	protein-coding
93544	chr17	19060421	19060680	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1362	NR_003924	780852		NR_003924		SNORD3B-2	U3-2B|U3b2	small nucleolar RNA, C/D box 3B-2	snoRNA
164297	chr3	57646271	57646430	+	0	NA	exon (NM_152678, exon 10 of 20)	exon (NM_152678, exon 10 of 20)	46727	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
97746	chr17	44394071	44394300	+	0	NA	Intergenic	AluSz|SINE|Alu	-4536	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
227411	chr9	89574551	89574850	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-30312	NM_006705	10912		NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
72203	chr15	30164301	30165000	+	0	NA	Intergenic	Intergenic	-19103	NR_157594	102725021		NR_157593		ARHGAP11B-DT	-	ARHGAP11B divergent transcript	ncRNA
222542	chr8	140592721	140593030	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	42758	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
150348	chr21	42159921	42160580	+	0	NA	Intergenic	Intergenic	-39439	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
208541	chr7	70691801	70692000	+	0	NA	intron (NM_015570, intron 5 of 18)	AluSz|SINE|Alu	-440244	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
84899	chr16	31208271	31209080	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5444	NM_001008274	493829		NM_001008274	ENSG00000177238	TRIM72	MG53	tripartite motif containing 72	protein-coding
62007	chr13	81340871	81341080	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-113992	NR_047494	100861546		NR_047494	ENSG00000260094	LINC00564	-	long intergenic non-protein coding RNA 564	ncRNA
118040	chr19	34234171	34234950	+	0	NA	Intergenic	AluSp|SINE|Alu	-19994	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
71235	chr14	105178971	105179130	+	0	NA	intron (NM_177533, intron 1 of 4)	intron (NM_177533, intron 1 of 4)	2262	NM_177533	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
88341	chr16	84544201	84544600	+	0	NA	Intergenic	Intergenic	-39741	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
350	chr1	1008201	1008400	+	0	NA	Intergenic	Intergenic	-5197	NM_005101	9636		NM_005101	ENSG00000187608	ISG15	G1P2|IFI15|IMD38|IP17|UCRP|hUCRP	ISG15 ubiquitin like modifier	protein-coding
27308	chr10	30476601	30476800	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	42054	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
19363	chr1	173862461	173863350	+	0	NA	promoter-TSS (NR_037605)	promoter-TSS (NR_037605)	-343	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
141256	chr2	239893171	239893400	+	0	NA	intron (NR_136158, intron 10 of 10)	MLT1O|LTR|ERVL-MaLR	49809	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
156453	chr22	41248651	41248750	+	0	NA	intron (NM_001278651, intron 16 of 16)	intron (NM_001278651, intron 16 of 16)	4350	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
85799	chr16	56961951	56962550	+	0	NA	intron (NM_000078, intron 1 of 15)	intron (NM_000078, intron 1 of 15)	300	NM_000078	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
81791	chr16	11533451	11533980	+	0	NA	Intergenic	Intergenic	-6468	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
58002	chr12	124347951	124348950	+	0	NA	intron (NM_001077261, intron 29 of 47)	intron (NM_001077261, intron 29 of 47)	-11208	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
166052	chr3	108818421	108818980	+	0	NA	Intergenic	LTR33|LTR|ERVL	-4086	NM_001317747	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
208025	chr7	55641151	55641880	+	0	NA	Intergenic	L1M3f|LINE|L1	46517	NR_027340	360132		NM_182827	ENSG00000291029	FKBP9P1	FKBP9L	FKBP prolyl isomerase 9 pseudogene 1	pseudo
20470	chr1	198612851	198613400	+	0	NA	Intergenic	Intergenic	-25843	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
2373	chr1	9400171	9400830	+	0	NA	Intergenic	L2c|LINE|L2	28416	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
97879	chr17	45057101	45058330	+	0	NA	intron (NM_001288654, intron 1 of 4)	AluSx|SINE|Alu	3414	NM_001288654	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
95310	chr17	35580421	35580880	+	0	NA	Intergenic	AluSg|SINE|Alu	-2079	NM_000286	5193		NM_000286	ENSG00000108733	PEX12	PAF-3|PBD3A	peroxisomal biogenesis factor 12	protein-coding
189344	chr5	172184051	172184150	+	0	NA	intron (NM_005990, intron 1 of 18)	intron (NM_005990, intron 1 of 18)	4124	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
19945	chr1	184805601	184806630	+	0	NA	intron (NM_052966, intron 10 of 13)	intron (NM_052966, intron 10 of 13)	-51257	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
197690	chr6	85637751	85639780	+	0	NA	intron (NM_001253771, intron 3 of 10)	intron (NM_001253771, intron 3 of 10)	2686	NM_001159675	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
181939	chr5	54988901	54989400	+	0	NA	Intergenic	Intergenic	-3557	NM_001135604	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
7389	chr1	32902301	32902730	+	0	NA	Intergenic	MIRc|SINE|MIR	-1126	NM_001329723	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
91457	chr17	4809551	4810050	+	0	NA	intron (NM_002663, intron 8 of 24)	intron (NM_002663, intron 8 of 24)	2648	NM_002663	5338		NM_002663	ENSG00000129219	PLD2	PLD1C	phospholipase D2	protein-coding
221480	chr8	124486171	124486730	+	0	NA	exon (NM_007218, exon 2 of 2)	exon (NM_007218, exon 2 of 2)	11570	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
210649	chr7	100475151	100475250	+	0	NA	intron (NM_001303043, intron 2 of 4)	AluSx1|SINE|Alu	4014	NM_030935	81628		NM_030935	ENSG00000166925	TSC22D4	SPACDR|THG-1|THG1|TILZ2	TSC22 domain family member 4	protein-coding
123843	chr19	55234721	55234980	+	0	NA	intron (NM_014931, intron 17 of 23)	L1ME3A|LINE|L1	-3898	NR_106862	102465482		NR_106862	ENSG00000275519	MIR6804	hsa-mir-6804	microRNA 6804	ncRNA
54915	chr12	96132801	96133130	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-61410	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
175687	chr4	77046951	77047300	+	0	NA	TTS (NM_001348139)	TTS (NM_001348139)	27785	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
52478	chr12	55971371	55971530	+	0	NA	intron (NM_052827, intron 5 of 5)	intron (NM_052827, intron 5 of 5)	-2463	NM_001252036	5869		NM_002868	ENSG00000111540	RAB5B	-	RAB5B, member RAS oncogene family	protein-coding
111457	chr19	3867221	3867780	+	0	NA	intron (NR_027149, intron 1 of 2)	intron (NR_027149, intron 1 of 2)	1538	NM_001145640	23217		NM_015174	ENSG00000105278	ZFR2	KIAA1086	zinc finger RNA binding protein 2	protein-coding
28439	chr10	48608171	48608400	+	0	NA	intron (NM_001256025, intron 1 of 9)	MER91A|DNA|hAT-Tip100	-3154	NM_001347737	58504		NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
209153	chr7	75160671	75160900	+	0	NA	intron (NR_003187, intron 7 of 10)	intron (NR_003187, intron 7 of 10)	11213	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
177397	chr4	112266821	112267080	+	0	NA	intron (NM_018569, intron 9 of 9)	intron (NM_018569, intron 9 of 9)	18954	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
167799	chr3	133494471	133494630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-3404	NR_135276	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
44953	chr11	116791271	116792350	+	0	NA	promoter-TSS (NM_001371904)	promoter-TSS (NM_001371904)	69	NM_001371904	116519		NM_052968	ENSG00000110243	APOA5	APOAV|RAP3	apolipoprotein A5	protein-coding
228410	chr9	99197351	99197450	+	0	NA	Intergenic	L2b|LINE|L2	24542	NM_033087	85365		NM_033087	ENSG00000119523	ALG2	CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2	ALG2 alpha-1,3/1,6-mannosyltransferase	protein-coding
4022	chr1	18937271	18937900	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	19091	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
59050	chr13	20669071	20669560	+	0	NA	intron (NR_148462, intron 26 of 28)	intron (NR_148462, intron 26 of 28)	-32198	NM_001385225	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
117041	chr19	18935421	18935880	+	0	NA	intron (NM_001145721, intron 4 of 9)	MER113|DNA|hAT-Charlie	3399	NM_001145724	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
207540	chr7	44825551	44825930	+	0	NA	Intergenic	Intergenic	22347	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
195380	chr6	36692121	36692650	+	0	NA	Intergenic	Intergenic	-5441	NM_001257357	401258		NM_207498	ENSG00000255587	RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
151551	chr21	46544951	46545450	+	0	NA	exon (NM_001146115, exon 18 of 20)	exon (NM_001146115, exon 18 of 20)	59882	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
172342	chr4	1707701	1708300	+	0	NA	intron (NM_001306075, intron 1 of 6)	AluSg|SINE|Alu	4319	NM_001306075	7884		NM_006527	ENSG00000163950	SLBP	HBP	stem-loop histone mRNA binding protein	protein-coding
32086	chr10	101133501	101134100	+	0	NA	intron (NM_005521, intron 1 of 2)	intron (NM_005521, intron 1 of 2)	2500	NM_005521	3195		NM_005521	ENSG00000107807	TLX1	HOX11|TCL3	T cell leukemia homeobox 1	protein-coding
78154	chr15	90412351	90413280	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	24573	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
81982	chr16	11888171	11888330	+	0	NA	intron (NM_001130007, intron 6 of 14)	AluSx|SINE|Alu	27706	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
13808	chr1	117607501	117609050	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	2227	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
136444	chr2	176826371	176827130	+	0	NA	Intergenic	Intergenic	188996	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
237374	chrX	119235871	119237280	+	0	NA	exon (NM_006667, exon 1 of 3)	exon (NM_006667, exon 1 of 3)	290	NM_006667	10857		NM_006667	ENSG00000101856	PGRMC1	Dap1|HPR6.6|IZA|MPR	progesterone receptor membrane component 1	protein-coding
50015	chr12	42371971	42372500	+	0	NA	intron (NM_201515, intron 5 of 10)	intron (NM_201515, intron 5 of 10)	40437	NM_001364834	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
37070	chr11	12587601	12587800	+	0	NA	Intergenic	Intergenic	-86721	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
175719	chr4	77467121	77467200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-44593	NM_006419	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
91935	chr17	7334601	7335100	+	0	NA	Intergenic	Intergenic	-1679	NM_014716	9744		NM_014716	ENSG00000072818	ACAP1	CENTB1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding
46351	chr11	125874521	125874780	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-8964	NM_145014	219844		NM_145014	ENSG00000198331	HYLS1	HLS	HYLS1 centriolar and ciliogenesis associated	protein-coding
32273	chr10	102104221	102104730	+	0	NA	Intergenic	Intergenic	10527	NM_003893	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
134746	chr2	144660801	144661230	+	0	NA	Intergenic	MIR3|SINE|MIR	-6952	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
72315	chr15	31241551	31242250	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-11038	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
40053	chr11	62720501	62720900	+	0	NA	intron (NM_001079559, intron 9 of 13)	AluY|SINE|Alu	6684	NR_037946	100534595		NR_037946	ENSG00000234857	HNRNPUL2-BSCL2	-	HNRNPUL2-BSCL2 readthrough (NMD candidate)	ncRNA
35515	chr11	1552321	1552650	+	0	NA	Intergenic	Intergenic	19786	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
197946	chr6	89927921	89928180	+	0	NA	3' UTR (NM_001170794, exon 7 of 7)	3' UTR (NM_001170794, exon 7 of 7)	33581	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
231870	chr9	132972471	132973150	+	0	NA	intron (NM_004188, intron 2 of 10)	intron (NM_004188, intron 2 of 10)	-5884	NM_001135031	8328		NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding
92903	chr17	16450771	16451130	+	0	NA	intron (NM_001113567, intron 2 of 3)	intron (NM_001113567, intron 2 of 3)	9724	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
174522	chr4	40121601	40122000	+	0	NA	exon (NM_018177, exon 9 of 18)	exon (NM_018177, exon 9 of 18)	-64601	NR_027277	344967		NR_027277	ENSG00000293349	LOC344967	ACOT7L|BACHL	acyl-CoA thioesterase 7 pseudogene	pseudo
13101	chr1	111619371	111621190	+	0	NA	5' UTR (NM_001291896, exon 1 of 8)	5' UTR (NM_001291896, exon 1 of 8)	118	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
4117	chr1	19319571	19320130	+	0	NA	intron (NR_109848, intron 3 of 9)	AluSx|SINE|Alu	7524	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
126235	chr2	27055321	27055580	+	0	NA	intron (NM_001035507, intron 6 of 10)	intron (NM_001035507, intron 6 of 10)	3782	NM_021831	60509		NM_021831	ENSG00000084693	AGBL5	CCP5|RP75	AGBL carboxypeptidase 5	protein-coding
147178	chr20	56466071	56466230	+	0	NA	Intergenic	Intergenic	-2435	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
231345	chr9	130265571	130266000	+	0	NA	promoter-TSS (NM_001291815)	promoter-TSS (NM_001291815)	25	NM_001291815	256158		NM_144655	ENSG00000148357	HMCN2	-	hemicentin 2	protein-coding
36480	chr11	6250901	6251630	+	0	NA	Intergenic	Intergenic	-8573	NM_001318029	887		NM_176875	ENSG00000110148	CCKBR	CCK-2R|CCK-B|CCK2R|GASR	cholecystokinin B receptor	protein-coding
165317	chr3	87350551	87350950	+	0	NA	Intergenic	Intergenic	-74166	NM_000306	5449		NM_000306	ENSG00000064835	POU1F1	CPHD1|GHF-1|PIT1|POU1F1a|Pit-1	POU class 1 homeobox 1	protein-coding
141550	chr2	241392171	241392400	+	0	NA	intron (NM_001282984, intron 2 of 17)	LTR41C|LTR|ERVL	36000	NM_001282983	9855		NM_014808	ENSG00000006607	FARP2	FIR|FRG|PLEKHC3	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein-coding
195234	chr6	36241701	36241900	+	0	NA	Intergenic	L1ME3D|LINE|L1	-1368	NM_001145716	285848		NM_173676	ENSG00000180316	PNPLA1	ARCI10|dJ50J22.1	patatin like phospholipase domain containing 1	protein-coding
69074	chr14	92033071	92033430	+	0	NA	exon (NM_004239, exon 2 of 21)	exon (NM_004239, exon 2 of 21)	6809	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
165084	chr3	71483921	71484880	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	57689	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
176209	chr4	84299271	84299450	+	0	NA	promoter-TSS (NR_125909)	promoter-TSS (NR_125909)	-191	NR_125909	101928978		NR_125909	ENSG00000250546	LINC02994	-	long intergenic non-protein coding RNA 2994	ncRNA
213593	chr7	139383201	139383730	+	0	NA	intron (NM_016019, intron 2 of 9)	AluSq2|SINE|Alu	23571	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
194672	chr6	33667971	33668130	+	0	NA	intron (NM_002224, intron 16 of 57)	intron (NM_002224, intron 16 of 57)	-30078	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
76597	chr15	75359301	75359500	+	0	NA	exon (NM_006715, exon 17 of 26)	exon (NM_006715, exon 17 of 26)	-5715	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
46896	chr11	134071471	134071630	+	0	NA	intron (NM_032801, intron 1 of 8)	intron (NM_032801, intron 1 of 8)	2478	NM_032801	83700		NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
120921	chr19	45644651	45644750	+	0	NA	promoter-TSS (NM_001352053)	promoter-TSS (NM_001352053)	663	NR_147899	24139		NM_012155	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	EMAP like 2	protein-coding
225117	chr9	33466471	33467530	+	0	NA	TTS (NR_106910)	TTS (NR_106910)	935	NR_106910	102465512		NR_106910	ENSG00000275651	MIR6851	hsa-mir-6851	microRNA 6851	ncRNA
75174	chr15	64699971	64700330	+	0	NA	intron (NM_002537, intron 1 of 4)	intron (NM_002537, intron 1 of 4)	3131	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
143509	chr20	31516621	31518200	+	0	NA	intron (NM_178580, intron 1 of 12)	intron (NM_178580, intron 1 of 12)	2968	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
181751	chr5	50714301	50714700	+	0	NA	intron (NM_024615, intron 2 of 25)	L1PA8|LINE|L1	47086	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
94244	chr17	28680601	28681000	+	0	NA	intron (NM_003170, intron 11 of 36)	AluY|SINE|Alu	18595	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
149258	chr21	25967671	25968030	+	0	NA	intron (NM_001385253, intron 10 of 16)	intron (NM_001385253, intron 10 of 16)	172540	NM_001136016	351		NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|alpha-sAPP|preA4	amyloid beta precursor protein	protein-coding
172193	chr4	1246251	1246730	+	0	NA	intron (NM_001377192, intron 1 of 9)	intron (NM_001377192, intron 1 of 9)	2238	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
110624	chr19	2213771	2214330	+	0	NA	intron (NM_032482, intron 18 of 27)	CpG	20099	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
55685	chr12	107487871	107488030	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	-92924	NM_001017523	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
216132	chr8	11453721	11455150	+	0	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	12318	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
153885	chr22	30285671	30285830	+	0	NA	intron (NM_001037666, intron 8 of 8)	intron (NM_001037666, intron 8 of 8)	3755	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
138245	chr2	203018071	203018480	+	0	NA	intron (NM_001378026, intron 2 of 55)	intron (NM_001378026, intron 2 of 55)	3400	NM_001378026	65065		NM_198945	ENSG00000144426	NBEAL1	A530083I02Rik|ALS2CR16|ALS2CR17	neurobeachin like 1	protein-coding
86153	chr16	57752951	57753450	+	0	NA	exon (NM_005886, exon 11 of 20)	exon (NM_005886, exon 11 of 20)	17430	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
99911	chr17	56915351	56916350	+	0	NA	Intergenic	Intergenic	-1801	NM_005082	7706		NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
54727	chr12	93591201	93591900	+	0	NA	Intergenic	Intergenic	18875	NM_001270471	8835		NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
142232	chr20	3095171	3095630	+	0	NA	Intergenic	L2|LINE|L2	-10676	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
17091	chr1	156138101	156138300	+	0	NA	TTS (NM_001282624)	TTS (NM_001282624)	-11744	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
170818	chr3	189500971	189501130	+	0	NA	Intergenic	(CCTT)n|Simple_repeat|Simple_repeat	-95696	NM_001329964	8626		NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
39539	chr11	61106701	61107630	+	0	NA	intron (NM_014207, intron 1 of 10)	L2a|LINE|L2	4676	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
8975	chr1	44633801	44634680	+	0	NA	intron (NM_001319957, intron 5 of 13)	MIRb|SINE|MIR	2272	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
212645	chr7	129499071	129499630	+	0	NA	Intergenic	L1ME1|LINE|L1	-3181	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
60362	chr13	40921021	40922730	+	0	NA	promoter-TSS (NR_038258)	promoter-TSS (NR_038258)	-101	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
110723	chr19	2316751	2316930	+	0	NA	Intergenic	Intergenic	-8686	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
207273	chr7	43975771	43976130	+	0	NA	intron (NR_003655, intron 7 of 15)	intron (NR_003655, intron 7 of 15)	-21918	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
183630	chr5	80231171	80231530	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	24698	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
39768	chr11	61905471	61905630	+	0	NA	intron (NM_001271686, intron 4 of 8)	(GACA)n|Simple_repeat|Simple_repeat	12016	NM_013401	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
128434	chr2	55421371	55421530	+	0	NA	Intergenic	Intergenic	-1594	NM_001365480	55704		NM_018084	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL	coiled-coil domain containing 88A	protein-coding
127622	chr2	43059071	43060150	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-20067	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
100258	chr17	59439671	59440030	+	0	NA	intron (NR_110813, intron 2 of 2)	intron (NR_110813, intron 2 of 2)	73767	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
9298	chr1	46466451	46467200	+	0	NA	Intergenic	CpG	-17121	NR_121680	101929651		NR_121680	ENSG00000224863	LINC01398	-	long intergenic non-protein coding RNA 1398	ncRNA
164718	chr3	68085501	68085700	+	0	NA	intron (NM_213609, intron 2 of 4)	intron (NM_213609, intron 2 of 4)	81353	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
106427	chr18	13564201	13564800	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-46614	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
236429	chrX	71349801	71350000	+	0	NA	Intergenic	Intergenic	-16457	NR_104387	6872		NM_004606	ENSG00000147133	TAF1	BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|MRXS33|N-TAF1|NSCL2|OF|P250|TAF(II)250|TAF2A|TAFII-250|TAFII250|XDP	TATA-box binding protein associated factor 1	protein-coding
130771	chr2	86834751	86836180	+	0	NA	intron (NM_172101, intron 5 of 6)	intron (NM_172101, intron 5 of 6)	-26360	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
158362	chr22	50467451	50467550	+	0	NA	intron (NM_002972, intron 4 of 40)	intron (NM_002972, intron 4 of 40)	7535	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
155125	chr22	37634561	37635600	+	0	NA	Intergenic	Intergenic	-4589	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
27338	chr10	30605851	30605950	+	0	NA	Intergenic	Intergenic	23853	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
66124	chr14	60153751	60155480	+	0	NA	intron (NM_001322282, intron 2 of 5)	intron (NM_001322282, intron 2 of 5)	10783	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
8927	chr1	44006771	44007330	+	0	NA	intron (NR_048548, intron 4 of 12)	intron (NR_048548, intron 4 of 12)	10113	NM_201649	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
197979	chr6	90033871	90034230	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	139581	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
71205	chr14	105074871	105075730	+	0	NA	Intergenic	Intergenic	-9870	NM_013345	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
72233	chr15	30412451	30412950	+	0	NA	intron (NM_001282484, intron 1 of 18)	intron (NM_001282484, intron 1 of 18)	1560	NM_001282484	101059918		NM_001282484	ENSG00000186399	GOLGA8R	-	golgin A8 family member R	protein-coding
204777	chr7	5610751	5610850	+	0	NA	Intergenic	Intergenic	17984	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
118340	chr19	35628221	35629900	+	0	NA	promoter-TSS (NM_001319113)	promoter-TSS (NM_001319113)	24	NM_024321	79171		NM_024321	ENSG00000126254	RBM42	-	RNA binding motif protein 42	protein-coding
62037	chr13	88707701	88707930	+	0	NA	Intergenic	Intergenic	80962	NR_047490	100861553		NR_047490	ENSG00000261666	LINC00560	-	long intergenic non-protein coding RNA 560	ncRNA
134779	chr2	147511701	147511900	+	0	NA	Intergenic	Intergenic	-332717	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
150048	chr21	37377101	37378100	+	0	NA	intron (NM_001347723, intron 1 of 10)	AluJr|SINE|Alu	10043	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
118875	chr19	38669471	38670250	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	22211	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
82697	chr16	20739671	20740550	+	0	NA	intron (NM_001304550, intron 1 of 4)	intron (NM_001304550, intron 1 of 4)	1708	NM_017736	55623		NM_017736	ENSG00000066654	THUMPD1	NEDSOA|Tan1	THUMP domain containing 1	protein-coding
224022	chr9	2899571	2899730	+	0	NA	Intergenic	L1PA4|LINE|L1	-55555	NM_014878	9933		NM_014878	ENSG00000080608	PUM3	HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5	pumilio RNA binding family member 3	protein-coding
36266	chr11	3789501	3790480	+	0	NA	intron (NR_157590, intron 1 of 31)	AluSc|SINE|Alu	7556	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
77030	chr15	78743101	78743300	+	0	NA	Intergenic	Intergenic	-8837	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
179706	chr4	190177501	190178600	+	0	NA	intron (NR_137167, intron 2 of 5).2	BSR/Beta|Satellite|Satellite	4276	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
160595	chr3	31225101	31225300	+	0	NA	Intergenic	AluSx|SINE|Alu	-63413	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
37463	chr11	18275721	18275980	+	0	NA	Intergenic	LTR12C|LTR|ERV1	9586	NM_199161	6288		NM_000331	ENSG00000173432	SAA1	PIG4|SAA|SAA2|TP53I4	serum amyloid A1	protein-coding
129866	chr2	73073301	73073500	+	0	NA	TTS (NM_015470)	TTS (NM_015470)	-1688	NM_001371740	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
199335	chr6	113909221	113909550	+	0	NA	intron (NR_027060, intron 1 of 3)	intron (NR_027060, intron 1 of 3)	4998	NR_027060	285759		NM_173673	ENSG00000175967	LINC02880	-	long intergenic non-protein coding RNA 2880	ncRNA
88299	chr16	84099571	84100130	+	0	NA	intron (NM_003791, intron 2 of 22)	intron (NM_003791, intron 2 of 22)	17092	NM_003791	8720		NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SEDKF|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
56231	chr12	111834771	111835500	+	0	NA	Intergenic	L1PA3|LINE|L1	6795	NR_152606	51275		NR_015404	ENSG00000234608	MAPKAPK5-AS1	C12orf47|MAAS	MAPKAPK5 antisense RNA 1	ncRNA
24963	chr10	2501251	2501750	+	0	NA	promoter-TSS (NR_136146)	promoter-TSS (NR_136146)	-38	NR_136146	105376351		NR_136146		LINC02645	-	long intergenic non-protein coding RNA 2645	ncRNA
185245	chr5	123430871	123431430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7308	NM_001375408	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
83672	chr16	28369901	28370300	+	0	NA	Intergenic	AluSp|SINE|Alu	-7240	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
222218	chr8	133070121	133070730	+	0	NA	intron (NM_001045557, intron 1 of 7)	intron (NM_001045557, intron 1 of 7)	-10071	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
16934	chr1	155907471	155907630	+	0	NA	intron (NM_001256821, intron 3 of 5)	AluSx|SINE|Alu	3368	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
205901	chr7	25126821	25127250	+	0	NA	Intergenic	L1M1|LINE|L1	-1775	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
43710	chr11	86033121	86033380	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	35834	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
57268	chr12	121614851	121615550	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-11350	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
210676	chr7	100543871	100545050	+	0	NA	intron (NM_006076, intron 1 of 11)	intron (NM_006076, intron 1 of 11)	5257	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
26361	chr10	15879651	15879750	+	0	NA	Intergenic	Intergenic	-19167	NM_001318330	80013		NM_024948	ENSG00000148481	MINDY3	C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042	MINDY lysine 48 deubiquitinase 3	protein-coding
231521	chr9	131423271	131423580	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	29339	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
110170	chr19	1654621	1654980	+	0	NA	Intergenic	Intergenic	-2185	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
62814	chr13	109757621	109758100	+	0	NA	intron (NM_003749, intron 1 of 1)	AluSx|SINE|Alu	28723	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
219548	chr8	77345301	77345500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-105297	NR_125830	102724874		NR_125830		LOC102724874	-	uncharacterized LOC102724874	ncRNA
124929	chr2	8546601	8547550	+	0	NA	Intergenic	L2b|LINE|L2	36717	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
205651	chr7	22822291	22823530	+	0	NA	promoter-TSS (NM_019059)	promoter-TSS (NM_019059)	-61	NR_168014	54543		NM_019059	ENSG00000196683	TOMM7	GMPGS|TOM7	translocase of outer mitochondrial membrane 7	protein-coding
20063	chr1	185670321	185670900	+	0	NA	Intergenic	Intergenic	-42122	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
211573	chr7	105687921	105688450	+	0	NA	intron (NM_001385596, intron 3 of 11)	LTR35A|LTR|ERV1	-9023	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
41088	chr11	65522761	65523790	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-1808	NM_001048218	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
216964	chr8	23016771	23016930	+	0	NA	intron (NM_015178, intron 9 of 9)	intron (NM_015178, intron 9 of 9)	17302	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
233890	chrX	1591361	1593180	+	0	NA	intron (NM_005088, intron 1 of 4)	intron (NM_005088, intron 1 of 4)	666	NM_005088	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
137326	chr2	196086671	196087200	+	0	NA	Intergenic	AluJr|SINE|Alu	-18098	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
20609	chr1	198929821	198930350	+	0	NA	intron (NR_040073, intron 1 of 2)	intron (NR_040073, intron 1 of 2)	7344	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
40786	chr11	64886551	64886650	+	0	NA	Intergenic	AluSp|SINE|Alu	4646	NR_029578	406967		NR_029578	ENSG00000283926	MIR192	MIRN192|miR-192|miRNA192	microRNA 192	ncRNA
22914	chr1	225899821	225900180	+	0	NA	Intergenic	Intergenic	-10854	NM_020997	10637		NM_020997	ENSG00000243709	LEFTY1	LEFTB|LEFTYB	left-right determination factor 1	protein-coding
7859	chr1	36375751	36375850	+	0	NA	intron (NM_032017, intron 1 of 11)	AluSq2|SINE|Alu	10124	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
205378	chr7	14375621	14375880	+	0	NA	intron (NM_001350707, intron 21 of 25)	L2a|LINE|L2	-384325	NM_001163148	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
103608	chr17	78725571	78726650	+	0	NA	intron (NM_017456, intron 1 of 12)	AluY|SINE|Alu	-2360	NM_001292018	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
17321	chr1	156466601	156467080	+	0	NA	3' UTR (NM_005920, exon 12 of 12)	3' UTR (NM_005920, exon 12 of 12)	23847	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
226661	chr9	74973901	74974100	+	0	NA	intron (NR_121183, intron 1 of 4)	intron (NR_121183, intron 1 of 4)	21035	NR_121183	101927380		NR_121183		CARNMT1-AS1	C9orf41-AS1	CARNMT1 antisense RNA 1	ncRNA
124194	chr19	56309601	56310030	+	0	NA	intron (NM_001354658, intron 10 of 10)	intron (NM_001354658, intron 10 of 10)	4749	NM_001322066	79149		NM_024303	ENSG00000131848	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
97661	chr17	44209051	44209400	+	0	NA	intron (NM_001076683, intron 16 of 19)	MIRb|SINE|MIR	-1386	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
211240	chr7	102649271	102649430	+	0	NA	promoter-TSS (NM_001031618)	promoter-TSS (NM_001031618)	-975	NM_001166339	100310812		NM_001166339	ENSG00000173678	SPDYE2B	SPDYE2L	speedy/RINGO cell cycle regulator family member E2B	protein-coding
119082	chr19	39223701	39223930	+	0	NA	Intergenic	Intergenic	-19552	NM_001080468	342898		NM_001080468	ENSG00000179751	SYCN	INSSA1|SYL	syncollin	protein-coding
165811	chr3	105821201	105821700	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	46141	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
89006	chr16	87981251	87981700	+	0	NA	intron (NM_001173543, intron 3 of 13)	MLT1C|LTR|ERVL-MaLR	4322	NM_001384940	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
79579	chr16	999751	1000350	+	0	NA	Intergenic	Intergenic	18280	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
32753	chr10	104320821	104321080	+	0	NA	intron (NM_001272013, intron 1 of 1)	MER4D1|LTR|ERV1	-2414	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
14651	chr1	145644171	145644530	+	0	NA	intron (NM_001097612, intron 8 of 13)	intron (NM_001097612, intron 8 of 13)	36362	NM_001097612	653519		NM_001097612	ENSG00000117262	GPR89A	GPHR|GPR89|GPR89B|SH120|UNQ192	G protein-coupled receptor 89A	protein-coding
165536	chr3	100682371	100682730	+	0	NA	intron (NM_001308362, intron 9 of 9)	intron (NM_001308362, intron 9 of 9)	-26740	NM_001007565	10342		NM_006070	ENSG00000114354	TFG	HMSNP|SPG57|TF6|TRKT3	trafficking from ER to golgi regulator	protein-coding
10385	chr1	65002401	65003550	+	0	NA	promoter-TSS (NR_119383)	promoter-TSS (NR_119383)	-499	NR_119383	101927084		NR_119383	ENSG00000226891	LINC01359	-	long intergenic non-protein coding RNA 1359	ncRNA
136050	chr2	172555511	172557580	+	0	NA	intron (NR_103729, intron 1 of 11)	CpG	455	NM_001278549	5163		NM_002610	ENSG00000152256	PDK1	-	pyruvate dehydrogenase kinase 1	protein-coding
103958	chr17	79927271	79927830	+	0	NA	promoter-TSS (NR_110850)	promoter-TSS (NR_110850)	-825	NR_110850	101928766		NR_110850	ENSG00000262585	LINC01979	-	long intergenic non-protein coding RNA 1979	ncRNA
96638	chr17	40601571	40601930	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-36278	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
35134	chr11	710001	710450	+	0	NA	intron (NM_022772, intron 3 of 20)	intron (NM_022772, intron 3 of 20)	-3142	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
122388	chr19	49421071	49421830	+	0	NA	TTS (NM_178449)	TTS (NM_178449)	1991	NM_178449	113091		NM_178449	ENSG00000142538	PTH2	TIP39	parathyroid hormone 2	protein-coding
123221	chr19	52820721	52822050	+	0	NA	intron (NR_163139, intron 1 of 5)	intron (NR_163139, intron 1 of 5)	248	NM_006969	7576		NM_006969	ENSG00000198538	ZNF28	KOX24	zinc finger protein 28	protein-coding
226805	chr9	77170171	77170530	+	0	NA	Intergenic	Intergenic	-7095	NM_015186	23230		NM_015186	ENSG00000197969	VPS13A	BLTP5A|CHAC|CHOREIN	vacuolar protein sorting 13 homolog A	protein-coding
224944	chr9	33035851	33036630	+	0	NA	intron (NM_001314039, intron 5 of 7)	AluSx3|SINE|Alu	10967	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
156459	chr22	41250951	41251450	+	0	NA	intron (NM_001278651, intron 13 of 16)	intron (NM_001278651, intron 13 of 16)	1850	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
83225	chr16	23835371	23836300	+	0	NA	promoter-TSS (NM_002738)	promoter-TSS (NM_002738)	-148	NM_212535	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
63613	chr14	20622871	20623300	+	0	NA	Intergenic	CpG	18606	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
18508	chr1	161766021	161767100	+	0	NA	intron (NM_007348, intron 1 of 15)	intron (NM_007348, intron 1 of 15)	240	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
235155	chrX	41116071	41116430	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	30805	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
127400	chr2	42009621	42010230	+	0	NA	Intergenic	Intergenic	-38096	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
64863	chr14	35295151	35296080	+	0	NA	intron (NM_001282232, intron 1 of 6)	AluSq2|SINE|Alu	3233	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
202740	chr6	159008401	159009350	+	0	NA	Intergenic	Intergenic	-8673	NM_031924	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
147062	chr20	53707551	53707850	+	0	NA	Intergenic	Intergenic	99346	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
162599	chr3	48692951	48693250	+	0	NA	TTS (NR_027438)	TTS (NR_027438)	-7185	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
214641	chr7	150747751	150747950	+	0	NA	Intergenic	Intergenic	10502	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
219989	chr8	89901751	89903150	+	0	NA	promoter-TSS (NM_001126111)	promoter-TSS (NM_001126111)	-120	NM_001126111	734		NM_004337	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
129898	chr2	73226021	73226780	+	0	NA	3' UTR (NM_006062, exon 13 of 13)	3' UTR (NM_006062, exon 13 of 13)	6839	NM_032319	84279		NM_032319	ENSG00000135617	PRADC1	C2orf7|PAP21	protease associated domain containing 1	protein-coding
177891	chr4	128859151	128859450	+	0	NA	intron (NM_199320, intron 8 of 10)	intron (NM_199320, intron 8 of 10)	47456	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
168463	chr3	143046801	143047180	+	0	NA	intron (NM_001080415, intron 24 of 27)	SVA_D|Retroposon|SVA	45420	NM_001320222	23350		NM_001080415	ENSG00000163714	U2SURP	SR140|fSAPa	U2 snRNP associated SURP domain containing	protein-coding
12999	chr1	111040321	111040580	+	0	NA	Intergenic	AluY|SINE|Alu	-76506	NM_001006945	55791		NM_018372	ENSG00000121931	LRIF1	C1orf103|FSHD3|HBiX1|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
79320	chr16	564851	564950	+	0	NA	exon (NM_145270, exon 3 of 3)	exon (NM_145270, exon 3 of 3)	-2105	NM_001301159	283948		NM_176677	ENSG00000257108	NHLRC4	-	NHL repeat containing 4	protein-coding
87927	chr16	79282421	79282900	+	0	NA	Intergenic	Intergenic	318077	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
5557	chr1	25893921	25894380	+	0	NA	intron (NM_001145454, intron 4 of 4)	intron (NM_001145454, intron 4 of 4)	12003	NM_203401	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
188730	chr5	157461201	157461400	+	0	NA	intron (NM_001172292, intron 1 of 4)	intron (NM_001172292, intron 1 of 4)	1087	NM_001099287	348938		NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN|NIPA4|SLC57A6	NIPA like domain containing 4	protein-coding
228829	chr9	112086701	112087100	+	0	NA	intron (NM_022486, intron 10 of 16)	L1MC4|LINE|L1	88397	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
152704	chr22	21637721	21638180	+	0	NA	TTS (NM_152612)	TTS (NM_152612)	-4352	NM_022044	23753		NM_022044	ENSG00000128228	SDF2L1	-	stromal cell derived factor 2 like 1	protein-coding
115131	chr19	14376691	14377200	+	0	NA	Intergenic	AluJb|SINE|Alu	-4199	NM_001784	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
18346	chr1	161214971	161215530	+	0	NA	promoter-TSS (NM_004106)	promoter-TSS (NM_004106)	-45	NM_004106	2207		NM_004106	ENSG00000158869	FCER1G	FCRG	Fc epsilon receptor Ig	protein-coding
83909	chr16	28994971	28995130	+	0	NA	Intergenic	Intergenic	9998	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
141507	chr2	241190551	241191050	+	0	NA	intron (NM_001370694, intron 2 of 24)	intron (NM_001370694, intron 2 of 24)	2123	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
177346	chr4	110061651	110062150	+	0	NA	intron (NM_024090, intron 2 of 3)	intron (NM_024090, intron 2 of 3)	136715	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
135366	chr2	160427801	160428500	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	-20268	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
136834	chr2	183035971	183036730	+	0	NA	intron (NM_205842, intron 1 of 31)	intron (NM_205842, intron 1 of 31)	2107	NM_013436	10787		NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125|p125Nap1	NCK associated protein 1	protein-coding
11015	chr1	84759001	84759600	+	0	NA	Intergenic	Intergenic	-68832	NM_001166295	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
40582	chr11	64371301	64371700	+	0	NA	3' UTR (NM_001006944, exon 17 of 17)	3' UTR (NM_001006944, exon 17 of 17)	2898	NR_031602	100302280		NR_031602	ENSG00000221273	MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	ncRNA
73763	chr15	45461401	45462500	+	0	NA	Intergenic	(ACC)n|Simple_repeat|Simple_repeat	28900	NR_030599	100126311		NR_030599	ENSG00000284386	MIR147B	MIRN147B|mir-147b	microRNA 147b	ncRNA
15182	chr1	149158351	149159010	+	0	NA	Intergenic	Intergenic	42466	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
31153	chr10	90860571	90861150	+	0	NA	Intergenic	L1P4|LINE|L1	-2821	NM_019860	3363		NM_000872	ENSG00000148680	HTR7	5-HT7	5-hydroxytryptamine receptor 7	protein-coding
26669	chr10	22613671	22614500	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	100023	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
151928	chr22	19034821	19035080	+	0	NA	Intergenic	Intergenic	12326	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
40318	chr11	63901551	63902050	+	0	NA	intron (NM_004954, intron 11 of 16)	intron (NM_004954, intron 11 of 16)	13263	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
29028	chr10	64041251	64042030	+	0	NA	Intergenic	L1M3e|LINE|L1	-519750	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
48745	chr12	10720971	10721130	+	0	NA	intron (NM_003651, intron 1 of 9)	intron (NM_003651, intron 1 of 9)	2273	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
3007	chr1	12064671	12065050	+	0	NA	intron (NM_001281430, intron 1 of 13)	intron (NM_001281430, intron 1 of 13)	1483	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
192942	chr6	27791371	27791530	+	0	NA	Intergenic	Intergenic	16479	NM_003519	8340		NM_003519	ENSG00000185130	H2BC13	H2B/c|H2BFC|HIST1H2BL|dJ97D16.4	H2B clustered histone 13	protein-coding
169855	chr3	177193701	177194400	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	2428	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
4225	chr1	19473401	19473600	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	10795	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
227240	chr9	89313601	89314530	+	0	NA	intron (NM_001827, intron 1 of 2)	MamSINE1|SINE|tRNA-RTE	1840	NR_036108	100422936		NR_036108	ENSG00000265112	MIR3153	mir-3153	microRNA 3153	ncRNA
60872	chr13	46051571	46053080	+	0	NA	promoter-TSS (NR_046226)	promoter-TSS (NR_046226)	421	NM_001382208	23091		NM_015070	ENSG00000123200	ZC3H13	KIAA0853|Xio	zinc finger CCCH-type containing 13	protein-coding
165732	chr3	105367611	105369400	+	0	NA	intron (NM_001243281, intron 1 of 13)	intron (NM_001243281, intron 1 of 13)	1596	NM_001627	214		NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
218594	chr8	55893071	55893830	+	0	NA	intron (NM_002350, intron 1 of 12)	intron (NM_002350, intron 1 of 12)	9405	NR_145767	109617001		NR_145767	ENSG00000199405	SNORA1B	-	small nucleolar RNA, H/ACA box 1B	snoRNA
163008	chr3	49785751	49787500	+	0	NA	promoter-TSS (NM_001006115)	promoter-TSS (NM_001006115)	-83	NM_153273	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
197997	chr6	90077701	90077900	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	183331	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
111400	chr19	3764051	3764450	+	0	NA	intron (NM_172251, intron 1 of 2)	AluY|SINE|Alu	1568	NM_172251	116541		NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54|mL54	mitochondrial ribosomal protein L54	protein-coding
47220	chr12	914951	915580	+	0	NA	TTS (NM_001297422)	TTS (NM_001297422)	17811	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
9883	chr1	54348321	54348780	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	57844	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
182165	chr5	56615871	56616030	+	0	NA	Intergenic	Intergenic	-9694	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
164540	chr3	63951171	63952400	+	0	NA	intron (NM_001177387, intron 3 of 12)	intron (NM_001177387, intron 3 of 12)	-16009	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
175980	chr4	81504621	81505700	+	0	NA	Intergenic	MIR|SINE|MIR	-33253	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
152603	chr22	21399821	21400580	+	0	NA	Intergenic	Intergenic	16449	NM_001128635	440804		NM_001128635	ENSG00000274600	RIMBP3B	RIM-BP3.2|RIM-BP3.B|RIMBP3.2	RIMS binding protein 3B	protein-coding
204799	chr7	5634951	5635050	+	0	NA	intron (NM_207111, intron 15 of 16)	intron (NM_207111, intron 15 of 16)	42184	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
134797	chr2	147910821	147911160	+	0	NA	intron (NM_001278580, intron 4 of 10)	intron (NM_001278580, intron 4 of 10)	65961	NM_001616	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
2608	chr1	10030921	10031450	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1773	NM_001105562	10277		NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
239111	chrY	11293601	11293800	+	0	NA	Intergenic	Intergenic	1127890	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
123433	chr19	54121451	54121750	+	0	NA	intron (NM_015629, intron 3 of 13)	intron (NM_015629, intron 3 of 13)	5846	NM_015629	26121		NM_015629	ENSG00000105618	PRPF31	NY-BR-99|PRP31|RP11|SNRNP61	pre-mRNA processing factor 31	protein-coding
162320	chr3	47473101	47473880	+	0	NA	intron (NM_001320044, intron 1 of 19)	MIRb|SINE|MIR	2451	NM_012235	22937		NM_012235	ENSG00000114650	SCAP	-	SREBF chaperone	protein-coding
16770	chr1	155421971	155422330	+	0	NA	intron (NM_018489, intron 5 of 27)	AluSx|SINE|Alu	-11030	NR_034180	645682		NR_034180	ENSG00000237872	POU5F1P4	OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1	POU class 5 homeobox 1 pseudogene 4	pseudo
62489	chr13	99414701	99415200	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	58819	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
214975	chr7	152030871	152031480	+	0	NA	intron (NM_001371468, intron 2 of 12)	HERV9NC-int|LTR|ERV1	5501	NM_001371461	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
3497	chr1	16029501	16029700	+	0	NA	intron (NM_004070, intron 12 of 19)	intron (NM_004070, intron 12 of 19)	7564	NM_001257139	1187		NM_004070	ENSG00000186510	CLCNKA	CLCK1|ClC-K1|hClC-Ka	chloride voltage-gated channel Ka	protein-coding
106535	chr18	21579671	21579930	+	0	NA	intron (NM_052911, intron 2 of 11)	(AC)n|Simple_repeat|Simple_repeat	20904	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
145022	chr20	37990201	37991200	+	0	NA	intron (NM_014657, intron 8 of 8)	intron (NM_014657, intron 8 of 8)	42756	NM_014657	9675		NM_014657	ENSG00000101407	TTI1	KIAA0406|NEDMIM|smg-10	TELO2 interacting protein 1	protein-coding
9420	chr1	47743251	47743430	+	0	NA	Intergenic	(GGTGGT)n|Simple_repeat|Simple_repeat	254045	NM_001194986	388630		NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
152953	chr22	22926901	22927300	+	0	NA	Intergenic	Intergenic	39284	NM_001178126	100423062		NM_001178126	ENSG00000254709	IGLL5	IGL|IGLV|VL-MAR	immunoglobulin lambda like polypeptide 5	protein-coding
169961	chr3	179180271	179180680	+	0	NA	intron (NM_006218, intron 1 of 20)	intron (NM_006218, intron 1 of 20)	32118	NM_006218	5290		NM_006218	ENSG00000121879	PIK3CA	CCM4|CLAPO|CLOVE|CWS5|HMH|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding
42023	chr11	67424301	67425030	+	0	NA	3' UTR (NM_020811, exon 9 of 9)	3' UTR (NM_020811, exon 9 of 9)	-3829	NM_003952	6199		NM_003952	ENSG00000175634	RPS6KB2	KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb	ribosomal protein S6 kinase B2	protein-coding
2747	chr1	10676801	10677130	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	119681	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
30206	chr10	74829221	74830350	+	0	NA	intron (NM_001370142, intron 1 of 16)	AluSc|SINE|Alu	3185	NM_001370137	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
145944	chr20	46058121	46059330	+	0	NA	3' UTR (NM_001134771, exon 26 of 26)	3' UTR (NM_001134771, exon 26 of 26)	29510	NM_020708	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
147236	chr20	57409871	57410930	+	0	NA	Intergenic	Intergenic	-17344	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
35840	chr11	2307151	2307480	+	0	NA	intron (NM_139022, intron 3 of 9)	intron (NM_139022, intron 3 of 9)	-4175	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
164273	chr3	57578071	57578430	+	0	NA	intron (NM_001660, intron 3 of 5)	intron (NM_001660, intron 3 of 5)	19094	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
139785	chr2	230230321	230230730	+	0	NA	intron (NM_001278451, intron 1 of 25)	LTR8|LTR|ERV1	4789	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
24072	chr1	235317951	235318050	+	0	NA	intron (NM_016374, intron 2 of 23)	L1MB7|LINE|L1	-9216	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
81480	chr16	8934271	8934430	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	2289	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
180169	chr5	1446551	1447030	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-1350	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
90976	chr17	2700821	2701480	+	0	NA	exon (NM_001366662, exon 7 of 26)	exon (NM_001366662, exon 7 of 26)	-8231	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
113459	chr19	9863771	9864600	+	0	NA	intron (NM_058164, intron 1 of 5)	intron (NM_058164, intron 1 of 5)	-6010	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
207718	chr7	47647201	47647600	+	0	NA	Intergenic	Intergenic	-7844	NM_001123065	401335		NM_001123065	ENSG00000221845	LINC02902	C7orf65	long intergenic non-protein coding RNA 2902	ncRNA
36982	chr11	11849021	11849750	+	0	NA	intron (NM_001372101, intron 1 of 26)	MER20|DNA|hAT-Charlie	7413	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
162577	chr3	48673271	48673630	+	0	NA	TTS (NM_016453)	TTS (NM_016453)	9682	NR_111921	102724368		NR_111921	ENSG00000228350	LINC02585	CELSR3-AS1	long intergenic non-protein coding RNA 2585	ncRNA
183937	chr5	87410621	87411080	+	0	NA	intron (NM_001239, intron 2 of 8)	intron (NM_001239, intron 2 of 8)	2054	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
179502	chr4	184647971	184650530	+	0	NA	promoter-TSS (NM_001345891)	promoter-TSS (NM_001345891)	197	NM_004346	836		NM_004346	ENSG00000164305	CASP3	CPP32|CPP32B|SCA-1	caspase 3	protein-coding
128844	chr2	63843701	63844450	+	0	NA	intron (NM_001377529, intron 2 of 11)	intron (NM_001377529, intron 2 of 11)	2179	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
80813	chr16	3456751	3456930	+	0	NA	intron (NM_001317093, intron 2 of 6)	AluSq2|SINE|Alu	-1205	NM_001317094	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
122626	chr19	49815171	49815530	+	0	NA	Intergenic	AluSp|SINE|Alu	-2058	NM_001352262	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
49166	chr12	14983071	14983680	+	0	NA	Intergenic	Intergenic	10333	NM_006205	5149		NM_006205	ENSG00000139053	PDE6H	ACHM6|RCD3	phosphodiesterase 6H	protein-coding
222120	chr8	131915551	131915980	+	0	NA	intron (NM_001323555, intron 1 of 22)	intron (NM_001323555, intron 1 of 22)	-1008	NM_001323556	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
19031	chr1	169683101	169683880	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	25367	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
37599	chr11	19742651	19743030	+	0	NA	intron (NM_145117, intron 1 of 37)	intron (NM_145117, intron 1 of 37)	17243	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	ncRNA
20301	chr1	197198871	197199430	+	0	NA	intron (NR_135153, intron 2 of 11)	intron (NR_135153, intron 2 of 11)	2143	NR_135153	360023		NM_194314	ENSG00000177888	ZBTB41	FRBZ1|ZNF924	zinc finger and BTB domain containing 41	protein-coding
75921	chr15	70097201	70098550	+	0	NA	promoter-TSS (NM_005078)	promoter-TSS (NM_005078)	42	NM_001105192	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
71929	chr15	22837621	22839330	+	0	NA	promoter-TSS (NM_001008860)	promoter-TSS (NM_001008860)	-166	NM_001184889	81614		NM_030922	ENSG00000140157	NIPA2	SLC57A2	NIPA magnesium transporter 2	protein-coding
236810	chrX	79164071	79164780	+	0	NA	intron (NM_032553, intron 2 of 2)	intron (NM_032553, intron 2 of 2)	19737	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
103345	chr17	78045321	78045580	+	0	NA	intron (NM_001142640, intron 3 of 21)	intron (NM_001142640, intron 3 of 21)	41213	NM_018996	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
13607	chr1	116383521	116383780	+	0	NA	intron (NM_001160234, intron 1 of 22)	intron (NM_001160234, intron 1 of 22)	280	NM_001160234	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
137415	chr2	196275451	196276280	+	0	NA	intron (NM_001348768, intron 15 of 28)	intron (NM_001348768, intron 15 of 28)	15841	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
87715	chr16	75019171	75019330	+	0	NA	intron (NM_032268, intron 1 of 4)	AluJr|SINE|Alu	20226	NM_032268	84937		NM_032268	ENSG00000186187	ZNRF1	NIN283	zinc and ring finger 1	protein-coding
103870	chr17	79750951	79751250	+	0	NA	Intergenic	L1MB5|LINE|L1	20157	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
148816	chr21	8374751	8375050	+	0	NA	intron (NR_003287, intron 2 of 2)	ERVL-B4-int|LTR|ERVL	-5765	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
135398	chr2	160608751	160608850	+	0	NA	Intergenic	Intergenic	-114993	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
20972	chr1	202615651	202615750	+	0	NA	intron (NM_177402, intron 1 of 8)	L2a|LINE|L2	27753	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
209488	chr7	76625521	76625830	+	0	NA	exon (NM_012230, exon 3 of 7)	exon (NM_012230, exon 3 of 7)	1628	NM_012230	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
17629	chr1	157090051	157090680	+	0	NA	Intergenic	Intergenic	9443	NM_001004341	440695		NM_001004341	ENSG00000253831	ETV3L	-	ETS variant transcription factor 3 like	protein-coding
94076	chr17	27481171	27481730	+	0	NA	intron (NM_014238, intron 1 of 20)	intron (NM_014238, intron 1 of 20)	9486	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
148531	chr20	64107271	64108280	+	0	NA	promoter-TSS (NM_005286)	promoter-TSS (NM_005286)	-210	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
26003	chr10	12127901	12128300	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-1541	NM_001142628	55176		NM_018144	ENSG00000065665	SEC61A2	-	SEC61 translocon subunit alpha 2	protein-coding
192024	chr6	16433421	16433880	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	195063	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
95049	chr17	32524001	32524530	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	37272	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
87674	chr16	74603771	74603930	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	3264	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
91041	chr17	2880101	2880500	+	0	NA	intron (NM_001100398, intron 2 of 23)	L2b|LINE|L2	83862	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
97369	chr17	43313351	43313650	+	0	NA	Intergenic	Intergenic	-13269	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
137688	chr2	197482971	197483830	+	0	NA	Intergenic	LTR10C|LTR|ERV1	3503	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
141886	chr20	816001	816450	+	0	NA	Intergenic	Intergenic	-17490	NM_001042353	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
182504	chr5	64811101	64811380	+	0	NA	intron (NM_001364478, intron 10 of 11)	intron (NM_001364478, intron 10 of 11)	42310	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
158530	chr3	3178601	3180050	+	0	NA	intron (NM_016302, intron 1 of 10)	intron (NM_016302, intron 1 of 10)	366	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
125916	chr2	24971151	24973030	+	0	NA	promoter-TSS (NM_016544)	promoter-TSS (NM_016544)	4	NM_001198559	51277		NM_016544	ENSG00000115137	DNAJC27	RBJ|RabJS	DnaJ heat shock protein family (Hsp40) member C27	protein-coding
5855	chr1	26728301	26728500	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	32385	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
227573	chr9	92293351	92294550	+	0	NA	promoter-TSS (NM_001378586)	promoter-TSS (NM_001378586)	-253	NM_001378576	3376		NM_002161	ENSG00000196305	IARS1	GRIDHH|IARS|ILERS|ILRS|IRS|PRO0785	isoleucyl-tRNA synthetase 1	protein-coding
69246	chr14	92903221	92903880	+	0	NA	Intergenic	MIRc|SINE|MIR	3932	NR_135253	101929002		NR_135253	ENSG00000258499	LINC02287	-	long intergenic non-protein coding RNA 2287	ncRNA
36791	chr11	9484821	9485280	+	0	NA	intron (NM_001282656, intron 7 of 15)	AluY|SINE|Alu	24038	NM_003442	7702		NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
209615	chr7	77695901	77697900	+	0	NA	promoter-TSS (NR_134254)	promoter-TSS (NR_134254)	441	NM_198467	222194		NM_198467	ENSG00000187257	RSBN1L	-	round spermatid basic protein 1 like	protein-coding
94283	chr17	28715421	28716080	+	0	NA	intron (NM_001142625, intron 5 of 9)	intron (NM_001142625, intron 5 of 9)	2118	NM_001144942	83871		NM_031934	ENSG00000109113	RAB34	NARR|OFD20|RAB39|RAH	RAB34, member RAS oncogene family	protein-coding
120558	chr19	44963651	44963950	+	0	NA	intron (NM_001282175, intron 2 of 13)	AluSx|SINE|Alu	8420	NM_001294	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
14359	chr1	144045051	144045430	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-71721	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
23185	chr1	226939201	226940850	+	0	NA	promoter-TSS (NM_020247)	promoter-TSS (NM_020247)	-269	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
235613	chrX	47991421	47991680	+	0	NA	intron (NM_006962, intron 3 of 6)	intron (NM_006962, intron 3 of 6)	12439	NM_001007088	7569		NM_006962	ENSG00000147118	ZNF182	HHZ150|KOX14|ZNF21|Zfp182	zinc finger protein 182	protein-coding
231958	chr9	133146371	133146730	+	0	NA	intron (NM_001042368, intron 1 of 17)	MLT1F2|LTR|ERVL-MaLR	2660	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
154863	chr22	37129821	37130380	+	0	NA	intron (NM_000878, intron 9 of 9)	intron (NM_000878, intron 9 of 9)	19816	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
14157	chr1	121188601	121188800	+	0	NA	intron (NM_001271872, intron 2 of 9)	intron (NM_001271872, intron 2 of 9)	3725	NM_001271872	653464		NM_001271872	ENSG00000171943	SRGAP2C	SRGAP2P1	SLIT-ROBO Rho GTPase activating protein 2C	protein-coding
206303	chr7	30159521	30160350	+	0	NA	3' UTR (NM_152793, exon 3 of 3)	3' UTR (NM_152793, exon 3 of 3)	24949	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
107394	chr18	46095501	46095850	+	0	NA	intron (NM_004046, intron 1 of 11)	AluJb|SINE|Alu	2621	NM_004046	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
119734	chr19	41261421	41263300	+	0	NA	promoter-TSS (NM_144732)	promoter-TSS (NM_144732)	-197	NM_144732	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
7493	chr1	33257851	33258830	+	0	NA	intron (NM_152493, intron 1 of 8)	intron (NM_152493, intron 1 of 8)	1848	NM_152493	149076		NM_152493	ENSG00000160094	ZNF362	RN|lin-29	zinc finger protein 362	protein-coding
97167	chr17	42618501	42618700	+	0	NA	Intergenic	Intergenic	8917	NM_001070	7283		NM_001070	ENSG00000131462	TUBG1	CDCBM4|GCP-1|TUBG|TUBGCP1	tubulin gamma 1	protein-coding
45245	chr11	117984021	117984650	+	0	NA	Intergenic	Intergenic	-2059	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
105684	chr18	2659251	2660100	+	0	NA	intron (NM_015295, intron 1 of 47)	intron (NM_015295, intron 1 of 47)	3949	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
96014	chr17	39230451	39231030	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	-4795	NM_001351360	342667		NM_198993	ENSG00000141750	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
238405	chrX	150565771	150566380	+	0	NA	Intergenic	Intergenic	-2546	NM_001376906	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
231608	chr9	131563471	131563630	+	0	NA	Intergenic	AluSx1|SINE|Alu	18027	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
64425	chr14	24187101	24187900	+	0	NA	non-coding (NR_051979, exon 6 of 30)	non-coding (NR_051979, exon 6 of 30)	1316	NM_024658	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
234088	chrX	9311951	9312050	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-151295	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
46659	chr11	128710251	128710550	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-14377	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
66748	chr14	64513801	64514000	+	0	NA	TTS (NR_110550)	TTS (NR_110550)	-8687	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
222773	chr8	141874151	141874250	+	0	NA	Intergenic	Intergenic	-87887	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
58194	chr12	125330971	125331200	+	0	NA	intron (NM_052907, intron 1 of 8)	CpG	4469	NM_052907	114795		NM_052907	ENSG00000139364	TMEM132B	-	transmembrane protein 132B	protein-coding
64373	chr14	24138101	24138700	+	0	NA	TTS (NM_016049)	TTS (NM_016049)	2206	NM_001281529	5720		NM_006263	ENSG00000092010	PSME1	HEL-S-129m|IFI5111|PA28A|PA28alpha|REGalpha	proteasome activator subunit 1	protein-coding
42393	chr11	68956151	68956630	+	0	NA	Intergenic	Intergenic	24596	NM_198923	116512		NM_198923	ENSG00000172938	MRGPRD	MRGD|TGR7	MAS related GPR family member D	protein-coding
2226	chr1	8855151	8855450	+	0	NA	Intergenic	AluSg|SINE|Alu	11290	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
101890	chr17	74355221	74355750	+	0	NA	TTS (NM_001080466)	TTS (NM_001080466)	6383	NM_001080466	388419		NM_001080466	ENSG00000204347	BTBD17	BTBD17A|LGALS3BPL|TANGO10A	BTB domain containing 17	protein-coding
54630	chr12	92769121	92769580	+	0	NA	intron (NM_001377329, intron 16 of 16)	intron (NM_001377329, intron 16 of 16)	66361	NM_001377329	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
187704	chr5	143377071	143377580	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	25958	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
187953	chr5	149317121	149317600	+	0	NA	intron (NM_001146337, intron 11 of 17)	intron (NM_001146337, intron 11 of 17)	-28139	NM_152407	134266		NM_152407	ENSG00000164284	GRPEL2	Mt-GrpE#2	GrpE like 2, mitochondrial	protein-coding
202518	chr6	158567601	158568980	+	0	NA	intron (NR_164859, intron 1 of 16)	intron (NR_164859, intron 1 of 16)	8199	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
65165	chr14	49582721	49583580	+	0	NA	TTS (NM_001032)	TTS (NM_001032)	3230	NM_001032	6235		NM_001032	ENSG00000213741	RPS29	DBA13|S29|uS14	ribosomal protein S29	protein-coding
91610	chr17	5378571	5378730	+	0	NA	intron (NM_001083585, intron 15 of 16)	intron (NM_001083585, intron 15 of 16)	-40991	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
163464	chr3	50618301	50618900	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	1449	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
212971	chr7	130971101	130972100	+	0	NA	intron (NR_109851, intron 4 of 5)	AluJo|SINE|Alu	58136	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
119633	chr19	40796551	40796980	+	0	NA	non-coding (NR_037775, exon 10 of 10)	non-coding (NR_037775, exon 10 of 10)	-2426	NM_080732	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
79090	chr16	179721	180900	+	0	NA	promoter-TSS (NM_005331)	promoter-TSS (NM_005331)	-149	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
7003	chr1	31889151	31890000	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	48243	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
28087	chr10	43377251	43377650	+	0	NA	Intergenic	Intergenic	5806	NM_001184963	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
232923	chr9	136883601	136883900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2766	NM_021138	7186		NM_021138	ENSG00000127191	TRAF2	MGC:45012|RNF117|TRAP|TRAP3	TNF receptor associated factor 2	protein-coding
178225	chr4	142802001	142802200	+	0	NA	intron (NM_001385337, intron 1 of 20)	intron (NM_001385337, intron 1 of 20)	44201	NM_001385335	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
180010	chr5	1005951	1006350	+	0	NA	Intergenic	Intergenic	-2652	NM_033120	85409		NM_033120	ENSG00000145506	NKD2	Naked2	NKD inhibitor of WNT signaling pathway 2	protein-coding
96837	chr17	41972301	41972580	+	0	NA	intron (NM_033133, intron 3 of 3)	intron (NM_033133, intron 3 of 3)	4643	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
188398	chr5	153752971	153753130	+	0	NA	intron (NR_047578, intron 10 of 13)	MLT1E3|LTR|ERVL-MaLR	145937	NR_146729	105378238		NR_146729	ENSG00000251183	LINC01861	-	long intergenic non-protein coding RNA 1861	ncRNA
235714	chrX	48902151	48903750	+	0	NA	TTS (NM_001282651)	TTS (NM_001282651)	4458	NM_001167992	10084		NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
179935	chr5	766821	767180	+	0	NA	intron (NM_001351303, intron 3 of 13)	intron (NM_001351303, intron 3 of 13)	17729	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
187603	chr5	142931021	142931280	+	0	NA	intron (NR_146198, intron 10 of 22)	Charlie4z|DNA|hAT-Charlie	-62240	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
5385	chr1	25445951	25446250	+	0	NA	intron (NM_001282564, intron 1 of 8)	intron (NM_001282564, intron 1 of 8)	15203	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
177379	chr4	112099551	112100050	+	0	NA	Intergenic	Intergenic	-45654	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
5233	chr1	25000201	25000480	+	0	NA	Intergenic	AluSz|SINE|Alu	-23163	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
65190	chr14	49629051	49630100	+	0	NA	intron (NM_018139, intron 1 of 2)	AluSz|SINE|Alu	4411	NM_001378453	55172		NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
157165	chr22	42925601	42926200	+	0	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	21141	NM_007229	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
66971	chr14	66056601	66056800	+	0	NA	Intergenic	Intergenic	-429671	NR_110307	440184		NM_001004331	ENSG00000196553	CCDC196	C14orf53|LINC00238|NCRNA00238	coiled-coil domain containing 196	protein-coding
29398	chr10	70146501	70147850	+	0	NA	promoter-TSS (NM_001040273)	promoter-TSS (NM_001040273)	-475	NM_001040273	219743		NM_173555	ENSG00000156521	TYSND1	NET41	trypsin like peroxisomal matrix peptidase 1	protein-coding
79065	chr16	152021	152430	+	0	NA	promoter-TSS (NM_005332)	promoter-TSS (NM_005332)	-419	NM_005332	3050		NM_005332	ENSG00000130656	HBZ	HBAZ|HBZ-T1|HBZ1	hemoglobin subunit zeta	protein-coding
222674	chr8	141236771	141236930	+	0	NA	intron (NM_001286646, intron 2 of 8)	intron (NM_001286646, intron 2 of 8)	-8276	NM_001080431	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
83136	chr16	22948551	22949000	+	0	NA	Intergenic	MIR|SINE|MIR	134613	NM_006043	9956		NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate-glucosamine 3-sulfotransferase 2	protein-coding
125662	chr2	20053921	20054450	+	0	NA	Intergenic	LTR32|LTR|ERVL	-2557	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
108708	chr18	77071101	77071300	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	-54145	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
184161	chr5	95715921	95716280	+	0	NA	intron (NM_001349303, intron 2 of 8)	intron (NM_001349303, intron 2 of 8)	-15236	NM_014899	22836		NM_014899	ENSG00000164292	RHOBTB3	-	Rho related BTB domain containing 3	protein-coding
111622	chr19	4119971	4120130	+	0	NA	intron (NM_030662, intron 1 of 10)	intron (NM_030662, intron 1 of 10)	4072	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
142098	chr20	2558521	2559100	+	0	NA	intron (NM_080751, intron 3 of 19)	CpG	22237	NM_080751	117532		NM_080751	ENSG00000149488	TMC2	C20orf145	transmembrane channel like 2	protein-coding
199470	chr6	118427351	118427450	+	0	NA	Intergenic	L1PA3|LINE|L1	-73973	NR_002730	23629		NM_012107		BRD7P3	BP75	bromodomain containing 7 pseudogene 3	pseudo
66302	chr14	61401521	61402050	+	0	NA	intron (NM_006255, intron 2 of 13)	Charlie1a|DNA|hAT-Charlie	80342	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
105783	chr18	2845871	2846230	+	0	NA	promoter-TSS (NM_032048)	promoter-TSS (NM_032048)	-956	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
167777	chr3	133413401	133414200	+	0	NA	intron (NM_003571, intron 1 of 6)	intron (NM_003571, intron 1 of 6)	13744	NM_003571	8419		NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding
116885	chr19	18675871	18676330	+	0	NA	Intergenic	Intergenic	-7580	NM_015321	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
135730	chr2	169461021	169461530	+	0	NA	Intergenic	Intergenic	-18219	NM_152384	129880		NM_152384	ENSG00000163093	BBS5	-	Bardet-Biedl syndrome 5	protein-coding
212308	chr7	126700951	126701400	+	0	NA	3' UTR (NM_001371088, exon 8 of 8)	3' UTR (NM_001371088, exon 8 of 8)	357009	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
106902	chr18	25349451	25350000	+	0	NA	intron (NM_001308225, intron 1 of 6)	CpG	2441	NM_015461	25925		NM_015461	ENSG00000198795	ZNF521	EHZF|Evi3	zinc finger protein 521	protein-coding
217480	chr8	28931401	28931600	+	0	NA	intron (NM_001324393, intron 2 of 11)	intron (NM_001324393, intron 2 of 11)	40186	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
26871	chr10	25018301	25018500	+	0	NA	intron (NM_024838, intron 1 of 2)	MER58A|DNA|hAT-Charlie	1788	NM_024838	79896		NM_024838	ENSG00000185875	THNSL1	TSH1	threonine synthase like 1	protein-coding
129659	chr2	70246521	70247050	+	0	NA	intron (NR_147217, intron 1 of 12)	AluSx|SINE|Alu	1843	NM_022037	7072		NM_022037	ENSG00000116001	TIA1	ALS26|TIA-1|WDM	TIA1 cytotoxic granule associated RNA binding protein	protein-coding
200460	chr6	135116421	135116930	+	0	NA	Intergenic	Intergenic	-61853	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
82191	chr16	14954521	14954780	+	0	NA	Intergenic	AluSc|SINE|Alu	17207	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
219567	chr8	78802801	78803000	+	0	NA	intron (NM_000880, intron 1 of 5)	intron (NM_000880, intron 1 of 5)	2563	NM_000880	3574		NM_000880	ENSG00000104432	IL7	IL-7	interleukin 7	protein-coding
188366	chr5	151777871	151778230	+	0	NA	intron (NM_198395, intron 1 of 11)	L1ME1|LINE|L1	-5874	NR_132345	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
84588	chr16	30652771	30653530	+	0	NA	intron (NM_024031, intron 5 of 11)	intron (NM_024031, intron 5 of 11)	2190	NM_024031	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
26178	chr10	14531651	14532150	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	814	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
106652	chr18	22978201	22978630	+	0	NA	intron (NM_203291, intron 6 of 18)	intron (NM_203291, intron 6 of 18)	44539	NM_203291	5932		NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JAWAD|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding
137293	chr2	195561351	195561450	+	0	NA	Intergenic	L2c|LINE|L2	-95558	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
121041	chr19	45818501	45818700	+	0	NA	intron (NM_004819, intron 22 of 26)	intron (NM_004819, intron 22 of 26)	-3292	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
129909	chr2	73257151	73257450	+	0	NA	3' UTR (NM_001080410, exon 17 of 17)	3' UTR (NM_001080410, exon 17 of 17)	22992	NM_006429	10574		NM_006429	ENSG00000135624	CCT7	CCTETA|CCTH|NIP7-1|TCP1ETA	chaperonin containing TCP1 subunit 7	protein-coding
84312	chr16	30112651	30114350	+	0	NA	promoter-TSS (NM_024307)	promoter-TSS (NM_024307)	37	NM_024307	79153		NM_024307	ENSG00000102886	GDPD3	GDE7	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding
142066	chr20	2169621	2169700	+	0	NA	Intergenic	Intergenic	-37268	NR_161305	388780		NR_161305		LINC03086	-	long intergenic non-protein coding RNA 3086	ncRNA
127457	chr2	42202101	42202300	+	0	NA	intron (NM_019063, intron 1 of 22)	L1MA7|LINE|L1	-31969	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
200791	chr6	137888671	137888830	+	0	NA	Intergenic	L1PA7|LINE|L1	-20517	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
236204	chrX	65681601	65682230	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	14261	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
30723	chr10	83603771	83603930	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	73239	NR_134317	105378397		NR_134317	ENSG00000233945	LINC02650	-	long intergenic non-protein coding RNA 2650	ncRNA
29156	chr10	68717451	68717550	+	0	NA	Intergenic	Intergenic	-3739	NM_001282960	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
16250	chr1	153962101	153962800	+	0	NA	promoter-TSS (NR_106795)	promoter-TSS (NR_106795)	-30	NR_106795	102465441		NR_106795	ENSG00000276584	MIR6737	hsa-mir-6737	microRNA 6737	ncRNA
82898	chr16	21628101	21628700	+	0	NA	intron (NM_001288660, intron 4 of 4)	intron (NM_001288660, intron 4 of 4)	24208	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
177073	chr4	108050271	108051030	+	0	NA	intron (NM_001130714, intron 9 of 9)	intron (NM_001130714, intron 9 of 9)	45986	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
176424	chr4	89259821	89260280	+	0	NA	intron (NM_198281, intron 1 of 1)	AluSx|SINE|Alu	47750	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
98468	chr17	47133321	47133700	+	0	NA	intron (NR_148340, intron 12 of 16)	AluSp|SINE|Alu	55785	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
216513	chr8	20302451	20302550	+	0	NA	intron (NM_021020, intron 1 of 3)	intron (NM_021020, intron 1 of 3)	1463	NM_021020	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
98100	chr17	45606751	45607200	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5113	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
81266	chr16	4627851	4628150	+	0	NA	intron (NM_001142291, intron 1 of 15)	AluY|SINE|Alu	3174	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
219710	chr8	80999121	81000250	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	112383	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
157504	chr22	45331371	45332100	+	0	NA	intron (NR_146323, intron 8 of 11)	intron (NR_146323, intron 8 of 11)	13292	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
30188	chr10	74419751	74420100	+	0	NA	intron (NM_001369124, intron 6 of 9)	intron (NM_001369124, intron 6 of 9)	109399	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
136007	chr2	172429071	172429230	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	1564	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
160826	chr3	33054971	33055950	+	0	NA	intron (NM_001135602, intron 3 of 12)	AluSg|SINE|Alu	41372	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
206009	chr7	26279481	26280530	+	0	NA	Intergenic	LTR45B|LTR|ERV1	-11857	NM_013322	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
132322	chr2	105361021	105361480	+	0	NA	3' UTR (NM_001318896, exon 6 of 6)	3' UTR (NM_001318896, exon 6 of 6)	23710	NM_001286537	79074		NM_024093	ENSG00000135974	C2orf49	asw	chromosome 2 open reading frame 49	protein-coding
37825	chr11	33159421	33159780	+	0	NA	intron (NM_001033505, intron 1 of 2)	AluSx1|SINE|Alu	1880	NM_001326	1479		NM_001326	ENSG00000176102	CSTF3	CSTF-77	cleavage stimulation factor subunit 3	protein-coding
103521	chr17	78478001	78478350	+	0	NA	intron (NM_173628, intron 51 of 80)	(ACC)n|Simple_repeat|Simple_repeat	-6735	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
9353	chr1	46930921	46931000	+	0	NA	intron (NR_134993, intron 8 of 8)	intron (NR_134993, intron 8 of 8)	10516	NR_134990	1579		NM_000778	ENSG00000187048	CYP4A11	CP4Y|CYP4A2|CYP4AII|CYPIVA11	cytochrome P450 family 4 subfamily A member 11	protein-coding
213020	chr7	131024471	131024850	+	0	NA	intron (NR_109850, intron 3 of 5)	AluJb|SINE|Alu	82370	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
56557	chr12	117032751	117033050	+	0	NA	Intergenic	Intergenic	-45563	NR_103809	100506551		NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA
80449	chr16	2672891	2674450	+	0	NA	promoter-TSS (NR_040023)	promoter-TSS (NR_040023)	-231	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
180237	chr5	1597201	1597750	+	0	NA	TTS (NR_003713)	TTS (NR_003713)	-2944	NR_003263	728609		NR_003263	ENSG00000291055	SDHAP3	SDHACL|SDHAL	SDHA pseudogene 3	pseudo
150067	chr21	37394901	37395330	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	-23790	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
4277	chr1	19676271	19676700	+	0	NA	intron (NM_000871, intron 1 of 2)	intron (NM_000871, intron 1 of 2)	11610	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
6479	chr1	28362221	28362500	+	0	NA	Intergenic	AluSx|SINE|Alu	-7380	NM_001350161	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
134542	chr2	143723971	143724130	+	0	NA	intron (NM_018460, intron 13 of 13)	intron (NM_018460, intron 13 of 13)	-213017	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
99152	chr17	49357001	49357400	+	0	NA	intron (NR_135579, intron 1 of 7)	AluSx3|SINE|Alu	-3965	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
67606	chr14	72590551	72590930	+	0	NA	Intergenic	HAL1|LINE|L1	73920	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
174726	chr4	42673021	42673300	+	0	NA	Intergenic	Intergenic	-16055	NM_001105529	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
144117	chr20	33991501	33991800	+	0	NA	TTS (NR_109885)	TTS (NR_109885)	-2261	NM_007367	22913		NM_007367	ENSG00000125970	RALY	HNRPCL2|P542	RALY heterogeneous nuclear ribonucleoprotein	protein-coding
51385	chr12	51887871	51888400	+	0	NA	promoter-TSS (NM_182608)	promoter-TSS (NM_182608)	32	NM_001130015	341405		NM_182608	ENSG00000167612	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
229002	chr9	113587651	113588350	+	0	NA	intron (NM_144488, intron 21 of 25)	intron (NM_144488, intron 21 of 25)	-5920	NM_144489	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
30881	chr10	86940601	86941000	+	0	NA	intron (NM_024756, intron 6 of 6)	intron (NM_024756, intron 6 of 6)	-14959	NM_001330120	6623		NM_003087	ENSG00000173267	SNCG	BCSG1|SR	synuclein gamma	protein-coding
81806	chr16	11547221	11547750	+	0	NA	TTS (NM_001136473)	TTS (NM_001136473)	-20238	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
49181	chr12	15279251	15279630	+	0	NA	Intergenic	Intergenic	-43068	NM_030667	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
69578	chr14	97135771	97136150	+	0	NA	Intergenic	(CAC)n|Simple_repeat|Simple_repeat	-18897	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
160044	chr3	18439571	18439730	+	0	NA	promoter-TSS (NM_001131010)	promoter-TSS (NM_001131010)	-914	NM_001131010	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
133220	chr2	113181271	113181430	+	0	NA	intron (NM_012455, intron 1 of 16)	L4_A_Mam|LINE|RTE-X	7379	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
137401	chr2	196242171	196242980	+	0	NA	intron (NM_001348768, intron 19 of 28)	intron (NM_001348768, intron 19 of 28)	-17449	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
57607	chr12	122470171	122470330	+	0	NA	Intergenic	AluY|SINE|Alu	30682	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
216207	chr8	11877621	11878480	+	0	NA	Intergenic	Intergenic	-9963	NM_001384723	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
181472	chr5	42720201	42720630	+	0	NA	3' UTR (NM_001242399, exon 10 of 10)	3' UTR (NM_001242399, exon 10 of 10)	-36403	NM_001134848	100129792		NM_001134848	ENSG00000198865	CCDC152	CH5400	coiled-coil domain containing 152	protein-coding
56932	chr12	120455721	120456200	+	0	NA	intron (NR_033684, intron 3 of 4)	AluY|SINE|Alu	9516	NR_033684	283459		NM_176818	ENSG00000257218	GATC	15E1.2|COXPD42	glutamyl-tRNA amidotransferase subunit C	protein-coding
209951	chr7	92639251	92640230	+	0	NA	intron (NM_001145306, intron 5 of 7)	intron (NM_001145306, intron 5 of 7)	-49350	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
6290	chr1	27611921	27612180	+	0	NA	TTS (NM_005248)	TTS (NM_005248)	-7906	NM_001371928	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
142107	chr20	2655771	2656180	+	0	NA	promoter-TSS (NR_002739)	promoter-TSS (NR_002739)	-122	NR_004399	692201		NR_004399	ENSG00000212498	SNORD86	U86	small nucleolar RNA, C/D box 86	snoRNA
53629	chr12	68158371	68158750	+	0	NA	intron (NM_000619, intron 1 of 3)	intron (NM_000619, intron 1 of 3)	1180	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
66556	chr14	62126901	62127200	+	0	NA	intron (NR_015358, intron 2 of 3)	intron (NR_015358, intron 2 of 3)	9693	NR_015358	646113		NM_001039785		LINC00643	-	long intergenic non-protein coding RNA 643	ncRNA
8930	chr1	44029251	44030600	+	0	NA	intron (NM_001328630, intron 1 of 10)	intron (NM_001328630, intron 1 of 10)	1198	NM_001328629	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
71375	chr14	105500701	105501600	+	0	NA	Intergenic	AluSx|SINE|Alu	9901	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
94438	chr17	29158171	29158400	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	-17896	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
31213	chr10	91378121	91379150	+	0	NA	intron (NR_024467, intron 3 of 4)	Charlie7|DNA|hAT-Charlie	-30600	NM_001348365	143279		NM_173497	ENSG00000165338	HECTD2	-	HECT domain E3 ubiquitin protein ligase 2	protein-coding
49888	chr12	39368851	39369150	+	0	NA	intron (NM_001378440, intron 3 of 36)	intron (NM_001378440, intron 3 of 36)	74120	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
157289	chr22	44309121	44309450	+	0	NA	intron (NM_001099294, intron 1 of 4)	L2a|LINE|L2	3666	NM_001099294	85352		NM_001099294	ENSG00000138944	SHISAL1	KIAA1644	shisa like 1	protein-coding
209601	chr7	77563821	77564080	+	0	NA	intron (NM_001131008, intron 1 of 17)	AluSz|SINE|Alu	25907	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
238742	chrX	154317501	154317780	+	0	NA	intron (NM_001145933, intron 7 of 12)	L2b|LINE|L2	12470	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
71423	chr14	105582651	105583000	+	0	NA	Intergenic	Intergenic	-38291	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
22721	chr1	224186251	224186880	+	0	NA	intron (NM_001321542, intron 1 of 2)	AluY|SINE|Alu	2885	NM_001321542	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
4211	chr1	19456851	19457350	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	27195	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
150106	chr21	37451451	37451750	+	0	NA	intron (NM_101395, intron 3 of 12)	Tigger3|DNA|TcMar-Tigger	31301	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
209865	chr7	90402451	90402550	+	0	NA	promoter-TSS (NM_001185073)	promoter-TSS (NM_001185073)	-961	NM_012129	9069		NM_012129	ENSG00000157224	CLDN12	-	claudin 12	protein-coding
88789	chr16	87337151	87337450	+	0	NA	intron (NM_024735, intron 5 of 8)	L1M5|LINE|L1	19791	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
147009	chr20	53577721	53577980	+	0	NA	intron (NM_006526, intron 3 of 5)	AluSx1|SINE|Alu	15989	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
236589	chrX	73381101	73381300	+	0	NA	Intergenic	L1HS|LINE|L1	-66054	NM_005193	1046		NM_005193	ENSG00000131264	CDX4	-	caudal type homeobox 4	protein-coding
223891	chr9	281671	282630	+	0	NA	intron (NM_001193536, intron 1 of 46)	intron (NM_001193536, intron 1 of 46)	9102	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
4682	chr1	22711521	22711780	+	0	NA	intron (NM_017449, intron 1 of 15)	CpG	811	NM_001309193	2048		NM_004442	ENSG00000133216	EPHB2	BDPLT22|CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5	EPH receptor B2	protein-coding
16451	chr1	154581501	154582080	+	0	NA	TTS (NM_001365048)	TTS (NM_001365048)	14012	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
106587	chr18	22171751	22172300	+	0	NA	exon (NM_005257, exon 2 of 7)	exon (NM_005257, exon 2 of 7)	2436	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
195477	chr6	37072621	37073100	+	0	NA	Intergenic	Intergenic	67205	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
51418	chr12	52013971	52014450	+	0	NA	intron (NM_001271856, intron 6 of 6)	intron (NM_001271856, intron 6 of 6)	3718	NM_001271856	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
24593	chr1	245953321	245955000	+	0	NA	intron (NM_001375963, intron 5 of 11)	intron (NM_001375963, intron 5 of 11)	34391	NM_001375965	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
151839	chr22	18523371	18523630	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-4302	NM_001242313	728229		NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
130452	chr2	85435571	85436130	+	0	NA	intron (NM_201594, intron 19 of 20)	intron (NM_201594, intron 19 of 20)	16919	NM_201594								
181565	chr5	43155471	43155980	+	0	NA	intron (NM_003432, intron 4 of 7)	HERVL40-int|LTR|ERVL	34160	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
101642	chr17	68246901	68248700	+	0	NA	promoter-TSS (NM_001033572)	promoter-TSS (NM_001033572)	-204	NM_001346483	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
8348	chr1	40225501	40225900	+	0	NA	intron (NM_012421, intron 6 of 7)	AluY|SINE|Alu	-22237	NM_001008740	127391		NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
126051	chr2	25558301	25558780	+	0	NA	intron (NM_001320937, intron 8 of 8)	intron (NM_001320937, intron 8 of 8)	91682	NM_001256308	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
214318	chr7	149263871	149264030	+	0	NA	intron (NR_144366, intron 1 of 6)	intron (NR_144366, intron 1 of 6)	-1079	NR_144367	100289678		NM_001195220	ENSG00000204946	ZNF783	-	zinc finger protein 783	protein-coding
116004	chr19	17119151	17119450	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	27065	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
175756	chr4	77760071	77760430	+	0	NA	intron (NM_144571, intron 4 of 11)	AluJr|SINE|Alu	58814	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
26718	chr10	22670301	22670580	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	43668	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
217093	chr8	24371001	24371400	+	0	NA	intron (NR_125808, intron 3 of 5)	intron (NR_125808, intron 3 of 5)	-13085	NM_014479	27299		NM_014479	ENSG00000134028	ADAMDEC1	M12.219	ADAM like decysin 1	protein-coding
221377	chr8	123390301	123390700	+	0	NA	intron (NM_014109, intron 1 of 27)	intron (NM_014109, intron 1 of 27)	5947	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
22883	chr1	225809001	225809200	+	0	NA	Intergenic	Intergenic	-1024	NM_001378426	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
192879	chr6	27471371	27471680	+	0	NA	intron (NM_001318893, intron 2 of 5)	L3|LINE|CR1	1373	NM_001318892	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
236660	chrX	76148701	76150200	+	0	NA	Intergenic	CpG	-23479	NM_001300888	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
228938	chr9	113341701	113342300	+	0	NA	Intergenic	L2-1_AMi|LINE|L2	-1725	NM_001012361	114987		NM_145241	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
116331	chr19	17835971	17836130	+	0	NA	exon (NM_000215, exon 14 of 24)	exon (NM_000215, exon 14 of 24)	11932	NM_000215	3718		NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
229228	chr9	114922721	114923200	+	0	NA	intron (NM_001244, intron 1 of 3)	intron (NM_001244, intron 1 of 3)	7631	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
136166	chr2	174391301	174391500	+	0	NA	intron (NM_004882, intron 1 of 9)	AluSx|SINE|Alu	4312	NM_004882	9541		NM_004882	ENSG00000138433	CIR1	CIR	corepressor interacting with RBPJ, CIR1	protein-coding
148666	chr21	6125571	6126180	+	0	NA	Intergenic	Intergenic	14744	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
172991	chr4	4247501	4249180	+	0	NA	promoter-TSS (NM_001297552)	promoter-TSS (NM_001297552)	-98	NM_032927	85013		NM_032927	ENSG00000132406	TMEM128	-	transmembrane protein 128	protein-coding
65664	chr14	52527071	52527630	+	0	NA	intron (NM_020784, intron 6 of 20)	MER21B|LTR|ERVL	25155	NM_020784	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
226732	chr9	75870471	75870830	+	0	NA	Intergenic	Intergenic	-19994	NM_001190482	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
167621	chr3	129583801	129584200	+	0	NA	intron (NM_015103, intron 7 of 35)	intron (NM_015103, intron 7 of 35)	22676	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
183985	chr5	88883921	88884330	+	0	NA	promoter-TSS (NM_002397)	promoter-TSS (NM_002397)	411	NM_001364335	4208		NM_002397	ENSG00000081189	MEF2C	C5DELq14.3|DEL5q14.3|NEDHSIL	myocyte enhancer factor 2C	protein-coding
147303	chr20	57680301	57680500	+	0	NA	intron (NM_199171, intron 1 of 3)	MER20|DNA|hAT-Charlie	10286	NM_001255976	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
62983	chr13	112301201	112301600	+	0	NA	Intergenic	Intergenic	-12067	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
46701	chr11	128824151	128824650	+	0	NA	Intergenic	CpG	18069	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
12569	chr1	108738151	108738650	+	0	NA	intron (NM_001144937, intron 11 of 12)	intron (NM_001144937, intron 11 of 12)	-8274	NM_007269	6814		NM_007269	ENSG00000116266	STXBP3	MUNC18-3|MUNC18C|PSP|UNC-18C	syntaxin binding protein 3	protein-coding
239105	chrY	11156271	11156430	+	0	NA	Intergenic	Intergenic	1245552	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
170647	chr3	187070251	187070550	+	0	NA	intron (NM_173216, intron 5 of 7)	intron (NM_173216, intron 5 of 7)	31682	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
45032	chr11	117028301	117028830	+	0	NA	intron (NM_001281748, intron 1 of 24)	L2c|LINE|L2	69863	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
215689	chr8	824621	825280	+	0	NA	intron (NR_073397, intron 2 of 3)	intron (NR_073397, intron 2 of 3)	58276	NR_160729	105377777		NR_160729		LOC105377777	-	uncharacterized LOC105377777	ncRNA
228074	chr9	96317401	96317680	+	0	NA	intron (NR_104627, intron 12 of 12)	intron (NR_104627, intron 12 of 12)	-15364	NM_000197	3293		NM_000197	ENSG00000130948	HSD17B3	EDH17B3|SDR12C2	hydroxysteroid 17-beta dehydrogenase 3	protein-coding
106806	chr18	23966621	23968130	+	0	NA	Intergenic	Intergenic	-25512	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
153447	chr22	25112601	25112800	+	0	NA	promoter-TSS (NR_038941)	promoter-TSS (NR_038941)	-8	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
89383	chr16	88800851	88801050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2839	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
120123	chr19	42194921	42195930	+	0	NA	Intergenic	AluY|SINE|Alu	22252	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
12738	chr1	109559701	109560100	+	0	NA	intron (NM_006496, intron 1 of 8)	intron (NM_006496, intron 1 of 8)	11285	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
161177	chr3	39125151	39125730	+	0	NA	exon (NM_001105513, exon 10 of 28)	exon (NM_001105513, exon 10 of 28)	-12766	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
204508	chr7	4787401	4788250	+	0	NA	TTS (NR_039800)	TTS (NR_039800)	814	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
217399	chr8	28350151	28350450	+	0	NA	intron (NM_018660, intron 7 of 9)	intron (NM_018660, intron 7 of 9)	11653	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
139737	chr2	229835621	229836330	+	0	NA	3' UTR (NM_001348334, exon 7 of 7)	3' UTR (NM_001348334, exon 7 of 7)	85704	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
37747	chr11	31817971	31818480	+	0	NA	promoter-TSS (NM_001258462)	promoter-TSS (NM_001258462)	-264	NM_001368919	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
209739	chr7	87188971	87189330	+	0	NA	intron (NR_024550, intron 13 of 17)	MER20B|DNA|hAT-Charlie	30582	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
151765	chr22	17994221	17994480	+	0	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-13389	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
64522	chr14	24426871	24428530	+	0	NA	3' UTR (NM_001039771, exon 3 of 3)	3' UTR (NM_001039771, exon 3 of 3)	-1586	NM_001290256	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
190875	chr6	2242001	2242600	+	0	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	3305	NM_001500	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
148698	chr21	6371801	6372780	+	0	NA	Intergenic	Intergenic	87792	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
141495	chr2	241110251	241110350	+	0	NA	intron (NM_001252120, intron 16 of 18)	L1MB2|LINE|L1	-7968	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
136198	chr2	174564601	174565330	+	0	NA	intron (NM_001375839, intron 6 of 6)	AluSp|SINE|Alu	-6893	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
221520	chr8	124649301	124649500	+	0	NA	intron (NM_001363300, intron 3 of 12)	MIRb|SINE|MIR	79073	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
190340	chr5	179634151	179635150	+	0	NA	5' UTR (NM_001364235, exon 1 of 14)	5' UTR (NM_001364235, exon 1 of 14)	134	NM_001364233	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
215560	chr7	158809151	158809900	+	0	NA	intron (NM_020728, intron 1 of 21)	L1MB8|LINE|L1	19984	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
105061	chr17	82083651	82084730	+	0	NA	intron (NM_004104, intron 28 of 42)	intron (NM_004104, intron 28 of 42)	5950	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
236948	chrX	100924301	100924700	+	0	NA	intron (NM_212559, intron 1 of 2)	intron (NM_212559, intron 1 of 2)	4417	NM_212559	402415		NM_212559	ENSG00000182489	XKRX	XKR2|XPLAC|XRG2	XK related X-linked	protein-coding
113541	chr19	10187021	10187280	+	0	NA	intron (NM_001318730, intron 1 of 39)	intron (NM_001318730, intron 1 of 39)	7803	NM_001318731	1786		NM_001379	ENSG00000130816	DNMT1	ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI	DNA methyltransferase 1	protein-coding
128277	chr2	54588321	54588780	+	0	NA	intron (NM_178313, intron 1 of 30)	MIRb|SINE|MIR	30156	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
203040	chr6	164787471	164787630	+	0	NA	Intergenic	L1PA2|LINE|L1	34513	NR_131926	105378111		NR_131926		MEAT6	-	melanoma-associated transcript 6	ncRNA
47509	chr12	4113921	4114180	+	0	NA	Intergenic	L1ME3|LINE|L1	-159712	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
23684	chr1	231418671	231419030	+	0	NA	intron (NM_001377261, intron 1 of 3)	AluJo|SINE|Alu	3437	NM_001377261	54583		NM_022051	ENSG00000135766	EGLN1	C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia inducible factor 1	protein-coding
198170	chr6	95582171	95582330	+	0	NA	intron (NM_024641, intron 1 of 4)	AluY|SINE|Alu	4715	NM_024641	79694		NM_024641	ENSG00000172469	MANEA	ENDO|hEndo	mannosidase endo-alpha	protein-coding
43527	chr11	82718201	82718480	+	0	NA	Intergenic	Intergenic	15524	NM_175885	220382		NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
58660	chr12	132527551	132528300	+	0	NA	intron (NM_001382740, intron 3 of 11)	intron (NM_001382740, intron 3 of 11)	22519	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
73826	chr15	49064001	49064400	+	0	NA	Intergenic	Intergenic	-17754	NM_001193489	9728		NM_014701	ENSG00000138593	SECISBP2L	SBP2L|SLAN	SECIS binding protein 2 like	protein-coding
174482	chr4	39931121	39932030	+	0	NA	intron (NM_001100399, intron 2 of 32)	MLT1F|LTR|ERVL-MaLR	46336	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
83403	chr16	27180921	27181330	+	0	NA	Intergenic	L2c|LINE|L2	-22401	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
215717	chr8	1672571	1672980	+	0	NA	intron (NM_001346810, intron 10 of 14)	intron (NM_001346810, intron 10 of 14)	-51111	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
181104	chr5	36944371	36944830	+	0	NA	intron (NM_133433, intron 1 of 46)	MamRTE1|LINE|RTE-BovB	67831	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
160922	chr3	36843071	36844050	+	0	NA	intron (NM_014831, intron 16 of 22)	intron (NM_014831, intron 16 of 22)	-21060	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
2280	chr1	8945421	8945880	+	0	NA	promoter-TSS (NM_001270501)	promoter-TSS (NM_001270501)	-218	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
58695	chr12	132555701	132555900	+	0	NA	intron (NM_001382740, intron 5 of 11)	MLT1D|LTR|ERVL-MaLR	-26197	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
114288	chr19	11638401	11638680	+	0	NA	Intergenic	AluSx1|SINE|Alu	28549	NR_002944	664709		NR_002944		HNRNPA1P10	HNRPA1L-2	heterogeneous nuclear ribonucleoprotein A1 pseudogene 10	pseudo
7896	chr1	36576101	36576300	+	0	NA	Intergenic	Intergenic	-92886	NM_156039	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
40296	chr11	63866121	63867200	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	-21877	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
41584	chr11	66343101	66343300	+	0	NA	intron (NM_015399, intron 1 of 9)	L2b|LINE|L2	1904	NM_015399	25855		NM_015399	ENSG00000174744	BRMS1	-	BRMS1 transcriptional repressor and anoikis regulator	protein-coding
14217	chr1	143202301	143202880	+	0	NA	Intergenic	Intergenic	220002	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
182289	chr5	57383201	57383400	+	0	NA	Intergenic	Intergenic	99511	NM_001017992	345651		NM_001017992	ENSG00000169067	ACTBL2	ACT	actin beta like 2	protein-coding
184514	chr5	100905211	100905880	+	0	NA	Intergenic	L2c|LINE|L2	-2263	NM_175052	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
206236	chr7	29102601	29102900	+	0	NA	intron (NM_001371268, intron 3 of 9)	intron (NM_001371268, intron 3 of 9)	-22283	NR_120523	1124		NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
192846	chr6	27157401	27158650	+	0	NA	Intergenic	Intergenic	10399	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
59247	chr13	23960571	23960770	+	0	NA	Intergenic	LTR25-int|LTR|ERV1	-11355	NR_073430	400110		NM_207439		ANKRD20A19P	-	ankyrin repeat domain 20 family member A19, pseudogene	pseudo
197432	chr6	73652521	73653600	+	0	NA	intron (NM_001382631, intron 1 of 11)	intron (NM_001382631, intron 1 of 11)	932	NM_001382635	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
80943	chr16	3852901	3854330	+	0	NA	intron (NM_004380, intron 1 of 30)	AluY|SINE|Alu	26505	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
198624	chr6	107758101	107758300	+	0	NA	intron (NM_001286408, intron 1 of 6)	L2a|LINE|L2	-26050	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
21627	chr1	206587321	206588250	+	0	NA	3' UTR (NM_182664, exon 5 of 5)	3' UTR (NM_182664, exon 5 of 5)	24680	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
143562	chr20	31612721	31613980	+	0	NA	Intergenic	AluY|SINE|Alu	6164	NR_036161	100422904		NR_036161	ENSG00000264395	MIR3193	-	microRNA 3193	ncRNA
87175	chr16	69344701	69344900	+	0	NA	intron (NM_144676, intron 3 of 3)	intron (NM_144676, intron 3 of 3)	5028	NM_016101	51388		NM_016101	ENSG00000132603	NIP7	CGI-37|HSPC031|KD93	nucleolar pre-rRNA processing protein NIP7	protein-coding
146718	chr20	50591321	50591850	+	0	NA	intron (NM_080829, intron 19 of 21)	intron (NM_080829, intron 19 of 21)	5799	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
116468	chr19	18094351	18094650	+	0	NA	intron (NM_001290024, intron 1 of 17)	MER53|DNA|hAT	-3278	NM_015016	23031		NM_015016	ENSG00000099308	MAST3	DEE108	microtubule associated serine/threonine kinase 3	protein-coding
203454	chr7	380721	381230	+	0	NA	non-coding (NR_033960, exon 3 of 3)	non-coding (NR_033960, exon 3 of 3)	1550	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
61874	chr13	77184671	77184830	+	0	NA	intron (NM_015057, intron 32 of 82)	intron (NM_015057, intron 32 of 82)	109236	NR_046716	100874212		NR_046716	ENSG00000236051	MYCBP2-AS1	-	MYCBP2 antisense RNA 1	ncRNA
91530	chr17	4984621	4985500	+	0	NA	intron (NM_001171166, intron 2 of 20)	AluSp|SINE|Alu	2401	NM_001171167	23125		NM_015099	ENSG00000108509	CAMTA2	-	calmodulin binding transcription activator 2	protein-coding
120770	chr19	45430451	45431700	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluSx3|SINE|Alu	-5579	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
176262	chr4	87001171	87001330	+	0	NA	intron (NM_001166693, intron 2 of 20)	AluSc8|SINE|Alu	-5738	NM_001313959	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
35910	chr11	2420651	2421480	+	0	NA	exon (NM_014555, exon 3 of 24)	exon (NM_014555, exon 3 of 24)	1980	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
55143	chr12	98642901	98643100	+	0	NA	intron (NM_201612, intron 1 of 2)	AluSg|SINE|Alu	1788	NM_201613	121457		NM_153687	ENSG00000166130	IKBIP	IKIP	IKBKB interacting protein	protein-coding
143475	chr20	31059251	31059350	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-198364	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
158309	chr22	50406021	50406280	+	0	NA	intron (NM_001351648, intron 3 of 22)	intron (NM_001351648, intron 3 of 22)	-1292	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
201118	chr6	142874401	142875880	+	0	NA	intron (NM_006734, intron 1 of 9)	L2a|LINE|L2	70036	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
130920	chr2	87479221	87479680	+	0	NA	intron (NR_024204, intron 2 of 3)	AluSx|SINE|Alu	9500	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
19540	chr1	178727621	178727950	+	0	NA	intron (NM_001286247, intron 1 of 18)	L2a|LINE|L2	2541	NM_152663	55103		NM_018037	ENSG00000116191	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
124448	chr19	58505701	58505900	+	0	NA	intron (NM_001321196, intron 3 of 9)	AluSp|SINE|Alu	6192	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
32303	chr10	102147921	102148180	+	0	NA	intron (NM_015062, intron 9 of 13)	intron (NM_015062, intron 9 of 13)	-4126	NM_001284388	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
198723	chr6	108250571	108250880	+	0	NA	intron (NM_001300929, intron 1 of 3)	intron (NM_001300929, intron 1 of 3)	10315	NM_001300928	8724		NM_003795	ENSG00000112335	SNX3	Grd19|MCOPS8|SDP3	sorting nexin 3	protein-coding
30866	chr10	86709451	86709750	+	0	NA	intron (NM_001368066, intron 9 of 14)	intron (NM_001368066, intron 9 of 14)	41036	NM_001080116	11155		NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
75503	chr15	66394371	66394730	+	0	NA	intron (NM_002755, intron 1 of 10)	AluJr4|SINE|Alu	7638	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
31335	chr10	92938971	92939130	+	0	NA	intron (NM_001013848, intron 13 of 22)	L2c|LINE|L2	90530	NM_001319195	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
85938	chr16	57140701	57140900	+	0	NA	intron (NM_152727, intron 14 of 15)	AluSx1|SINE|Alu	41750	NM_001354098	80011		NM_024946	ENSG00000172775	PSME3IP1	C16orf94|CDA018|CDA10|FAM192A|NIP30|PIP30	proteasome activator subunit 3 interacting protein 1	protein-coding
50831	chr12	49106801	49107850	+	0	NA	intron (NM_001352161, intron 1 of 16)	intron (NM_001352161, intron 1 of 16)	3575	NM_001352166	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
84043	chr16	29572851	29573680	+	0	NA	intron (NR_135305, intron 1 of 13)	AluYm1|SINE|Alu	21827	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
18004	chr1	160544721	160545480	+	0	NA	3' UTR (NM_001184879, exon 8 of 8)	3' UTR (NM_001184879, exon 8 of 8)	-21845	NM_001184714	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
48827	chr12	12334101	12335250	+	0	NA	intron (NM_001363613, intron 4 of 4)	intron (NM_001363613, intron 4 of 4)	15567	NM_001363613	54682		NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
163197	chr3	50224671	50225100	+	0	NA	Intergenic	L2a|LINE|L2	-2183	NM_001282620	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
78526	chr15	92948601	92948800	+	0	NA	intron (NM_001042572, intron 12 of 12)	AluY|SINE|Alu	44301	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
54510	chr12	92104871	92105250	+	0	NA	intron (NR_132341, intron 1 of 4)	AluSz|SINE|Alu	36653	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
208188	chr7	64904971	64905500	+	0	NA	intron (NM_021148, intron 1 of 3)	AluSz|SINE|Alu	1962	NM_001385650	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
73051	chr15	40892801	40893000	+	0	NA	Intergenic	Intergenic	-1550	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
22130	chr1	211842821	211843700	+	0	NA	intron (NR_135820, intron 3 of 5)	Tigger1|DNA|TcMar-Tigger	12299	NR_135820	102723727		NR_135818	ENSG00000229258	LPGAT1-AS1	-	LPGAT1 antisense RNA 1	ncRNA
205103	chr7	6827351	6828100	+	0	NA	Intergenic	AluJr|SINE|Alu	-1450	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
99724	chr17	50907821	50908280	+	0	NA	Intergenic	Intergenic	-40072	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
179987	chr5	883821	885250	+	0	NA	intron (NM_001375861, intron 7 of 16)	intron (NM_001375861, intron 7 of 16)	7987	NR_134296								
50138	chr12	45720021	45720480	+	0	NA	Intergenic	Intergenic	7671	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
85289	chr16	48611501	48612230	+	0	NA	Intergenic	Intergenic	-1685	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
81281	chr16	4661651	4662050	+	0	NA	intron (NM_001142291, intron 5 of 15)	intron (NM_001142291, intron 5 of 15)	-9468	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
128026	chr2	47177901	47178430	+	0	NA	Intergenic	Intergenic	-1229	NM_001305625	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
238597	chrX	153909021	153909450	+	0	NA	intron (NM_001164741, intron 21 of 22)	intron (NM_001164741, intron 21 of 22)	4521	NM_001146151	554		NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|NDI1|V2R	arginine vasopressin receptor 2	protein-coding
223397	chr8	143921701	143922450	+	0	NA	exon (NM_000445, exon 33 of 33)	exon (NM_000445, exon 33 of 33)	17522	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
40485	chr11	64248551	64248950	+	0	NA	TTS (NR_135086)	TTS (NR_135086)	1696	NR_135086	105369340		NR_135086	ENSG00000256940	PPP1R14B-AS1	-	PPP1R14B antisense RNA 1	ncRNA
108599	chr18	75226451	75226950	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	15903	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
181	chr1	669801	670000	+	0	NA	Intergenic	L1PA10|LINE|L1	16754	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
102463	chr17	75718751	75719250	+	0	NA	Intergenic	AluSz|SINE|Alu	-2459	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
34680	chr10	133360851	133361300	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-3056	NM_001301828	282969		NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
155088	chr22	37565821	37566800	+	0	NA	5' UTR (NM_152243, exon 2 of 3)	5' UTR (NM_152243, exon 2 of 3)	5830	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
51850	chr12	53469571	53469830	+	0	NA	intron (NM_031989, intron 13 of 14)	AluSp|SINE|Alu	5232	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
158003	chr22	49871651	49872180	+	0	NA	intron (NM_014838, intron 1 of 1)	AluSg|SINE|Alu	18071	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
47421	chr12	3074801	3075400	+	0	NA	Intergenic	AluSx|SINE|Alu	-2255	NM_001168320	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
221871	chr8	128390101	128390580	+	0	NA	Intergenic	Intergenic	174339	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
1785	chr1	6100951	6101050	+	0	NA	TTS (NM_015557)	TTS (NM_015557)	55112	NM_001199863	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
116837	chr19	18578001	18578500	+	0	NA	TTS (NM_001033930)	TTS (NM_001033930)	5410	NM_001321021	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
174995	chr4	50556151	50556250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1286800	NM_015115	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
235863	chrX	50813121	50813330	+	0	NA	intron (NR_027121, intron 1 of 9)	(AGC)n|Simple_repeat|Simple_repeat	819	NM_020717	57477		NM_020717	ENSG00000158352	SHROOM4	MRXSSDS|SHAP|shrm4	shroom family member 4	protein-coding
16110	chr1	153635101	153636380	+	0	NA	intron (NM_001244664, intron 1 of 3)	AluSx3|SINE|Alu	-1379	NM_001024210	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
29216	chr10	68994771	68995130	+	0	NA	intron (NM_015634, intron 1 of 6)	FLAM_A|SINE|Alu	6147	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
154613	chr22	36303551	36304250	+	0	NA	intron (NM_002473, intron 19 of 40)	intron (NM_002473, intron 19 of 40)	-16993	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
114693	chr19	13121451	13121550	+	0	NA	intron (NM_052876, intron 1 of 5)	intron (NM_052876, intron 1 of 5)	3236	NM_052876	112939		NM_052876	ENSG00000160877	NACC1	BEND8|BTBD14B|BTBD30|NAC-1|NAC1|NECFM	nucleus accumbens associated 1	protein-coding
9361	chr1	47185371	47185530	+	0	NA	intron (NM_005764, intron 2 of 3)	intron (NM_005764, intron 2 of 3)	4586	NM_005764	10158		NM_005764	ENSG00000162366	PDZK1IP1	DD96|MAP17|SPAP	PDZK1 interacting protein 1	protein-coding
9486	chr1	51189421	51189750	+	0	NA	Intergenic	Intergenic	45511	NR_147076	105378716		NR_147076	ENSG00000203356	LINC01562	-	long intergenic non-protein coding RNA 1562	ncRNA
163222	chr3	50253851	50254450	+	0	NA	intron (NM_002070, intron 4 of 8)	intron (NM_002070, intron 4 of 8)	7240	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
125812	chr2	24075751	24077380	+	0	NA	promoter-TSS (NM_016047)	promoter-TSS (NM_016047)	-239	NM_016047	51639		NM_016047	ENSG00000115128	SF3B6	CGI-110|HSPC175|Ht006|P14|SAP14|SAP14a|SF3B14|SF3B14a	splicing factor 3b subunit 6	protein-coding
180285	chr5	1878071	1878230	+	0	NA	exon (NM_016358, exon 5 of 5)	exon (NM_016358, exon 5 of 5)	4775	NM_016358	50805		NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
141982	chr20	1377151	1377850	+	0	NA	non-coding (NR_040047, exon 3 of 3)	non-coding (NR_040047, exon 3 of 3)	15461	NR_106929	102465524		NR_106929	ENSG00000284436	MIR6869	hsa-mir-6869	microRNA 6869	ncRNA
3238	chr1	13790671	13791330	+	0	NA	intron (NM_012231, intron 8 of 9)	MIR|SINE|MIR	41585	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
231481	chr9	131363901	131364100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9651	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
21974	chr1	209566021	209566300	+	0	NA	Intergenic	Intergenic	-17554	NM_020439	57172		NM_020439	ENSG00000008118	CAMK1G	CLICK3|CLICKIII|VWS1	calcium/calmodulin dependent protein kinase IG	protein-coding
116496	chr19	18128901	18129100	+	0	NA	intron (NM_015016, intron 12 of 26)	intron (NM_015016, intron 12 of 26)	-24163	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
156416	chr22	41199871	41200050	+	0	NA	Intergenic	AluJb|SINE|Alu	-2459	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
141213	chr2	239379271	239380130	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	21320	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
7558	chr1	35081071	35081230	+	0	NA	intron (NM_001319955, intron 1 of 8)	AluSq2|SINE|Alu	1765	NM_024772	79830		NM_024772	ENSG00000197056	ZMYM1	MYM	zinc finger MYM-type containing 1	protein-coding
12820	chr1	109986651	109986750	+	0	NA	intron (NM_001242673, intron 1 of 16)	intron (NM_001242673, intron 1 of 16)	1935	NM_006621	10768		NM_006621	ENSG00000168710	AHCYL1	DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA	adenosylhomocysteinase like 1	protein-coding
113325	chr19	8589971	8590530	+	0	NA	intron (NM_030957, intron 15 of 25)	intron (NM_030957, intron 15 of 25)	1946	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
238411	chrX	150573401	150574300	+	0	NA	intron (NM_001376908, intron 1 of 14)	intron (NM_001376908, intron 1 of 14)	5229	NM_000252	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
171020	chr3	195066521	195066780	+	0	NA	Intergenic	Intergenic	-27938	NR_104188	100874528		NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
114794	chr19	13783751	13784050	+	0	NA	Intergenic	Intergenic	9444	NM_014047	28974		NM_014047	ENSG00000104979	C19orf53	HSPC023|L10K|LYDG10	chromosome 19 open reading frame 53	protein-coding
160450	chr3	29281901	29282100	+	0	NA	intron (NM_001003792, intron 1 of 13)	intron (NM_001003792, intron 1 of 13)	688	NM_001330696	27303		NM_014483	ENSG00000144642	RBMS3	-	RNA binding motif single stranded interacting protein 3	protein-coding
154714	chr22	36433101	36433850	+	0	NA	Intergenic	Intergenic	-45508	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
148912	chr21	9018251	9018350	+	0	NA	Intergenic	Intergenic	30683	NR_162105	113218501		NR_162105		MIR10396A	-	microRNA 10396a	ncRNA
144052	chr20	33663021	33664780	+	0	NA	TTS (NM_080825)	TTS (NM_080825)	1573	NM_080825	128864		NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
90551	chr17	1500471	1501030	+	0	NA	intron (NM_016532, intron 7 of 11)	L2a|LINE|L2	-8064	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
145208	chr20	38900171	38900680	+	0	NA	intron (NM_001172735, intron 4 of 9)	intron (NM_001172735, intron 4 of 9)	-25992	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
76967	chr15	78167421	78167850	+	0	NA	3' UTR (NM_015162, exon 14 of 14)	3' UTR (NM_015162, exon 14 of 14)	18273	NM_005530	3419		NM_005530	ENSG00000166411	IDH3A	RP90	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein-coding
178574	chr4	151129901	151130100	+	0	NA	intron (NM_001378121, intron 18 of 20)	intron (NM_001378121, intron 18 of 20)	26173	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
39311	chr11	58788201	58788630	+	0	NA	Intergenic	L1PA15-16|LINE|L1	56289	NM_145016	219970		NM_145016	ENSG00000156689	GLYATL2	BXMAS2-10|GATF-B	glycine-N-acyltransferase like 2	protein-coding
148283	chr20	63701421	63702250	+	0	NA	exon (NM_001134758, exon 6 of 7)	exon (NM_001134758, exon 6 of 7)	5183	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
183492	chr5	79274871	79275780	+	0	NA	intron (NM_152405, intron 1 of 10)	AluY|SINE|Alu	39194	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
99212	chr17	49566901	49567100	+	0	NA	intron (NR_103773, intron 1 of 2)	L2c|LINE|L2	7064	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
140984	chr2	237997121	237997580	+	0	NA	intron (NR_037904, intron 4 of 18)	intron (NR_037904, intron 4 of 18)	28557	NM_001278305	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
14709	chr1	145932251	145933330	+	0	NA	TTS (NM_153713)	TTS (NM_153713)	-5306	NM_005105	9939		NM_005105	ENSG00000265241	RBM8A	BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1	RNA binding motif protein 8A	protein-coding
108320	chr18	63438951	63439680	+	0	NA	Intergenic	Intergenic	-16839	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
64203	chr14	23034221	23035500	+	0	NA	promoter-TSS (NM_002797)	promoter-TSS (NM_002797)	40	NM_002797	5693		NM_002797	ENSG00000100804	PSMB5	LMPX|MB1	proteasome 20S subunit beta 5	protein-coding
163179	chr3	50192271	50193180	+	0	NA	intron (NM_144499, intron 1 of 8)	intron (NM_144499, intron 1 of 8)	1115	NM_000172	2779		NM_000172	ENSG00000114349	GNAT1	CSNB1G|CSNBAD3|GBT1|GNATR|HG1F	G protein subunit alpha transducin 1	protein-coding
85547	chr16	53132721	53133180	+	0	NA	intron (NM_001352127, intron 1 of 38)	AluSz|SINE|Alu	1938	NM_001382353	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
53091	chr12	57744101	57745780	+	0	NA	promoter-TSS (NM_005981)	promoter-TSS (NM_005981)	-99	NM_005981	6302		NM_005981	ENSG00000135452	TSPAN31	SAS	tetraspanin 31	protein-coding
74007	chr15	52135301	52136450	+	0	NA	intron (NM_001379343, intron 5 of 10)	(AC)n|Simple_repeat|Simple_repeat	-23100	NM_001306168	10017		NM_020396	ENSG00000137875	BCL2L10	BCL-B|Boo|Diva|bcl2-L-10	BCL2 like 10	protein-coding
223073	chr8	143400221	143400480	+	0	NA	Intergenic	Intergenic	-17329	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
35635	chr11	1836801	1837080	+	0	NA	intron (NM_001290332, intron 7 of 8)	intron (NM_001290332, intron 7 of 8)	-2041	NM_003282	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
129962	chr2	73969301	73969700	+	0	NA	intron (NR_104030, intron 1 of 1)	intron (NR_104030, intron 1 of 1)	11939	NR_104030	100874048		NR_104029		DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
166117	chr3	111238551	111239280	+	0	NA	Intergenic	MIRc|SINE|MIR	167099	NM_001243288	25945		NM_015480	ENSG00000177707	NECTIN3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3	nectin cell adhesion molecule 3	protein-coding
10418	chr1	65419801	65421530	+	0	NA	promoter-TSS (NM_001003680)	promoter-TSS (NM_001003680)	-3	NM_001198683	54741		NM_017526	ENSG00000213625	LEPROT	LEPR|OB-RGRP|OBRGRP|VPS55	leptin receptor overlapping transcript	protein-coding
151449	chr21	46159221	46159650	+	0	NA	Intergenic	MER74B|LTR|ERVL	-3856	NM_001320412	10841		NM_006657	ENSG00000160282	FTCD	LCHC1	formimidoyltransferase cyclodeaminase	protein-coding
115933	chr19	16627351	16629980	+	0	NA	promoter-TSS (NM_004831)	promoter-TSS (NM_004831)	-461	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
48446	chr12	9710951	9711250	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	22199	NM_001267701	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
237823	chrX	129983871	129984900	+	0	NA	intron (NM_001379450, intron 1 of 13)	CpG-30027	1750	NM_021946	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
217871	chr8	37849401	37850480	+	0	NA	promoter-TSS (NM_018310)	promoter-TSS (NM_018310)	-79	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
68833	chr14	91275821	91276280	+	0	NA	intron (NM_001080414, intron 29 of 29)	AluYg6|SINE|Alu	-22170	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
22844	chr1	225450471	225450830	+	0	NA	Intergenic	Intergenic	-21795	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
175635	chr4	76276671	76277230	+	0	NA	intron (NM_001136570, intron 5 of 7)	intron (NM_001136570, intron 5 of 7)	25229	NM_001136570	100129583		NM_001136570	ENSG00000189157	FAM47E	-	family with sequence similarity 47 member E	protein-coding
106969	chr18	31939671	31940000	+	0	NA	intron (NM_014939, intron 1 of 28)	AluJb|SINE|Alu	3293	NM_014939	22878		NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex subunit 8	protein-coding
20751	chr1	200982321	200983000	+	0	NA	intron (NM_017596, intron 27 of 33)	intron (NM_017596, intron 27 of 33)	41054	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
182853	chr5	69559171	69559330	+	0	NA	promoter-TSS (NM_001098728).2	promoter-TSS (NM_001098728).2	-941	NM_001376006	728340		NM_001098728	ENSG00000183474	GTF2H2C	GTF2H2C_2	GTF2H2 family member C	protein-coding
226084	chr9	62679151	62679330	+	0	NA	Intergenic	AluJb|SINE|Alu	-122225	NR_121647	103352539		NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
236967	chrX	101392901	101393180	+	0	NA	intron (NM_001199974, intron 3 of 3)	AluSx|SINE|Alu	2029	NM_021029	6173		NM_021029	ENSG00000241343	RPL36A	L36A|L44L|MIG6|RPL44|eL42	ribosomal protein L36a	protein-coding
169163	chr3	156642901	156643100	+	0	NA	Intergenic	Intergenic	-31590	NM_015508	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
229069	chr9	114351921	114353180	+	0	NA	intron (NM_001317952, intron 13 of 20)	AluSz|SINE|Alu	22681	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
109984	chr19	1410371	1410950	+	0	NA	intron (NM_170711, intron 1 of 12)	intron (NM_170711, intron 1 of 12)	3074	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
234125	chrX	9733721	9734200	+	0	NA	intron (NM_000273, intron 8 of 8)	AluSq2|SINE|Alu	31887	NM_000273	4935		NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
78214	chr15	90603901	90604130	+	0	NA	intron (NM_001042574, intron 4 of 14)	intron (NM_001042574, intron 4 of 14)	-56219	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
152151	chr22	20013121	20013880	+	0	NA	intron (NM_001670, intron 1 of 19)	intron (NM_001670, intron 1 of 19)	3323	NM_001670	421		NM_001670	ENSG00000099889	ARVCF	-	ARVCF delta catenin family member	protein-coding
70907	chr14	104084921	104085850	+	0	NA	promoter-TSS (NM_001080464)	promoter-TSS (NM_001080464)	-315	NM_001080464	374569		NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT|LYSOLP|hASNase1	asparaginase	protein-coding
25327	chr10	6230271	6230430	+	0	NA	intron (NM_001314063, intron 15 of 15)	MIRb|SINE|MIR	27418	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
38424	chr11	45093251	45094150	+	0	NA	promoter-TSS (NM_001359633)	promoter-TSS (NM_001359633)	-459	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
176036	chr4	82368671	82368830	+	0	NA	intron (NM_001003810, intron 1 of 6)	intron (NM_001003810, intron 1 of 6)	5241	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
125731	chr2	20652921	20653380	+	0	NA	Intergenic	L2b|LINE|L2	-2052	NM_022460	64342		NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
66272	chr14	61371951	61372850	+	0	NA	intron (NM_006255, intron 1 of 13)	L1MC3|LINE|L1	50957	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
196180	chr6	42591251	42591350	+	0	NA	intron (NM_001363705, intron 2 of 46)	MER21C|LTR|ERVL	27271	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
153468	chr22	25406721	25406980	+	0	NA	Intergenic	Intergenic	-1442	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
12075	chr1	99106421	99106680	+	0	NA	intron (NR_033940, intron 1 of 2)	L1M1|LINE|L1	-101689	NM_001010861	163404		NM_001010861	ENSG00000117598	PLPPR5	LPPR5|PAP2|PAP2D|PRG5	phospholipid phosphatase related 5	protein-coding
126287	chr2	27204271	27205580	+	0	NA	exon (NM_021095, exon 8 of 17)	exon (NM_021095, exon 8 of 17)	7343	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
143798	chr20	32457651	32457750	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	25790	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
216250	chr8	12424801	12425550	+	0	NA	TTS (NM_001137610).2	TTS (NM_001137610).2	-7143	NR_073395	389633		NR_036463		FAM90A25P	FAM90A2P	Putative protein FAM90A2P	pseudo
170668	chr3	187713151	187713780	+	0	NA	intron (NR_034062, intron 1 of 2)	MER51A|LTR|ERV1	-10908	NM_001004312	344892		NM_001004312	ENSG00000198471	RTP2	Z3CXXC2	receptor transporter protein 2	protein-coding
18192	chr1	160850521	160850980	+	0	NA	intron (NM_001166664, intron 1 of 7)	MER21B|LTR|ERVL	12137	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
181828	chr5	52825771	52826130	+	0	NA	intron (NM_181501, intron 1 of 28)	Tigger1|DNA|TcMar-Tigger	38034	NM_015946	53918		NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota mRNA surveillance and ribosome rescue factor	protein-coding
206062	chr7	27163321	27163580	+	0	NA	non-coding (NR_037940, exon 3 of 3)	non-coding (NR_037940, exon 3 of 3)	2087	NM_152739	3205		NM_002142	ENSG00000078399	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding
142150	chr20	2799421	2799880	+	0	NA	intron (NM_019609, intron 1 of 13)	intron (NM_019609, intron 1 of 13)	977	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
239282	chrY	13754321	13754830	+	0	NA	Intergenic	Intergenic	50676	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
209528	chr7	77121521	77123180	+	0	NA	promoter-TSS (NM_020879)	promoter-TSS (NM_020879)	-61	NR_146190	641808		NR_146190		FAM185BP	FAM185B	family with sequence similarity 185, member A pseudogene	pseudo
131040	chr2	88201601	88202200	+	0	NA	Intergenic	Intergenic	31554	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
59589	chr13	27523451	27523550	+	0	NA	Intergenic	Intergenic	-72898	NM_001166263	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
92409	chr17	8378151	8378450	+	0	NA	intron (NM_001315531, intron 3 of 3)	AluSx|SINE|Alu	-1596	NM_001304947	124751		NM_213597	ENSG00000184619	KRBA2	-	KRAB-A domain containing 2	protein-coding
23643	chr1	230753701	230754170	+	0	NA	intron (NM_001319676, intron 1 of 17)	intron (NM_001319676, intron 1 of 17)	6547	NM_006615	10753		NM_006615	ENSG00000135773	CAPN9	GC36|nCL-4	calpain 9	protein-coding
76749	chr15	76345921	76346980	+	0	NA	Intergenic	CpG	9677	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
43170	chr11	75368951	75369380	+	0	NA	Intergenic	HAL1ME|LINE|L1	-17504	NM_020251	408		NM_004041	ENSG00000137486	ARRB1	ARB1|ARR1	arrestin beta 1	protein-coding
16047	chr1	152459871	152460650	+	0	NA	Intergenic	Intergenic	-45997	NM_016190	49860		NM_016190	ENSG00000143536	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
153496	chr22	26482201	26482480	+	0	NA	intron (NM_001349896, intron 1 of 13)	intron (NM_001349896, intron 1 of 13)	1443	NM_001349899	89781		NM_022081	ENSG00000100099	HPS4	BLOC3S2|LE	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding
113416	chr19	9645571	9645730	+	0	NA	3' UTR (NM_001130031, exon 6 of 6)	3' UTR (NM_001130031, exon 6 of 6)	24168	NR_122038	284385		NM_001242812	ENSG00000267106	ZNF561-AS1	C19orf82	ZNF561 antisense RNA 1 (head to head)	ncRNA
57808	chr12	123134301	123134500	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	16690	NM_020845	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
143766	chr20	32398551	32398980	+	0	NA	intron (NM_015338, intron 3 of 11)	AluYa5|SINE|Alu	39700	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
6428	chr1	28171171	28171330	+	0	NA	intron (NM_001164722, intron 1 of 1)	AluSx|SINE|Alu	5440	NM_000952	5724		NM_000952	ENSG00000169403	PTAFR	PAFR	platelet activating factor receptor	protein-coding
229363	chr9	121024251	121024350	+	0	NA	intron (NM_001317164, intron 9 of 20)	(GGGAGG)n|Simple_repeat|Simple_repeat	25975	NM_001317164	727		NM_001735	ENSG00000106804	C5	C5D|C5a|C5b|CPAMD4|ECLZB	complement C5	protein-coding
156325	chr22	40651521	40652580	+	0	NA	Intergenic	Intergenic	-15331	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
224208	chr9	5557751	5558900	+	0	NA	intron (NM_025239, intron 5 of 6)	intron (NM_025239, intron 5 of 6)	47794	NM_025239	80380		NM_025239	ENSG00000197646	PDCD1LG2	B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2	programmed cell death 1 ligand 2	protein-coding
29524	chr10	70815371	70817000	+	0	NA	intron (NM_003901, intron 1 of 14)	CpG	237	NM_003901	8879		NM_003901	ENSG00000166224	SGPL1	NPHS14|RENI|S1PL|SPL	sphingosine-1-phosphate lyase 1	protein-coding
215332	chr7	157360701	157361550	+	0	NA	intron (NM_001363676, intron 2 of 6)	intron (NM_001363676, intron 2 of 6)	24121	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
170696	chr3	187862651	187862950	+	0	NA	Intergenic	L1PA2|LINE|L1	113607	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
39619	chr11	61417521	61417800	+	0	NA	intron (NR_165413, intron 6 of 10)	intron (NR_165413, intron 6 of 10)	12315	NM_024811	79869		NM_024811	ENSG00000149532	CPSF7	CFIm59	cleavage and polyadenylation specific factor 7	protein-coding
49687	chr12	30757851	30757950	+	0	NA	intron (NR_135046, intron 1 of 1)	AluSq2|SINE|Alu	2826	NR_135046	645485		NR_135046	ENSG00000246331	LOC645485	-	uncharacterized LOC645485	ncRNA
171593	chr3	197051301	197051750	+	0	NA	intron (NM_001204386, intron 24 of 24)	intron (NM_001204386, intron 24 of 24)	-21708	NM_005929	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
225052	chr9	33170371	33171060	+	0	NA	intron (NR_108108, intron 1 of 3)	intron (NR_108108, intron 1 of 3)	2856	NR_108108	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
186412	chr5	135535101	135535300	+	0	NA	exon (NM_006161, exon 1 of 1)	exon (NM_006161, exon 1 of 1)	764	NM_006161	4762		NM_006161	ENSG00000181965	NEUROG1	AKA|CCDDRD|Math4C|NEUROD3|bHLHa6|ngn1	neurogenin 1	protein-coding
57101	chr12	121057971	121058130	+	0	NA	Intergenic	AluJo|SINE|Alu	-18808	NM_198213	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
201220	chr6	143553201	143553950	+	0	NA	TTS (NR_110149)	TTS (NR_110149)	8476	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
226317	chr9	68999551	68999960	+	0	NA	intron (NM_001376039, intron 14 of 14)	intron (NM_001376039, intron 14 of 14)	14358	NM_002732	5568		NM_002732	ENSG00000165059	PRKACG	BDPLT19|KAPG|PKACg	protein kinase cAMP-activated catalytic subunit gamma	protein-coding
167508	chr3	129244701	129244900	+	0	NA	Intergenic	AluSc|SINE|Alu	-4806	NM_016128	22820		NM_016128	ENSG00000181789	COPG1	COPG	COPI coat complex subunit gamma 1	protein-coding
71865	chr15	22290951	22291450	+	0	NA	Intergenic	Intergenic	32586	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
199881	chr6	127818401	127819200	+	0	NA	intron (NM_001010923, intron 3 of 5).2	L1MCa|LINE|L1	36388	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
44459	chr11	104959451	104959550	+	0	NA	intron (NM_033306, intron 1 of 9)	L2c|LINE|L2	9074	NM_001225	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
86213	chr16	58028421	58029050	+	0	NA	intron (NM_002428, intron 1 of 9)	intron (NM_002428, intron 1 of 9)	2981	NM_002428	4324		NM_002428	ENSG00000102996	MMP15	MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15	protein-coding
148859	chr21	8423951	8424510	+	0	NA	Intergenic	Intergenic	-8300	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
78722	chr15	98649401	98650100	+	0	NA	non-coding (NR_126453, exon 1 of 1)	non-coding (NR_126453, exon 1 of 1)	1211	NM_000875	3480		NM_000875	ENSG00000140443	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin like growth factor 1 receptor	protein-coding
66625	chr14	63745821	63746330	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-18010	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
125609	chr2	18520501	18520900	+	0	NA	Intergenic	Intergenic	39953	NM_020905	57665		NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14	protein-coding
223379	chr8	143889871	143890230	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-11583	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238579	chrX	153857721	153857980	+	0	NA	Intergenic	LTR50|LTR|ERVL	18094	NM_024003	3897		NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|HYCX|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
108577	chr18	75041671	75041830	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	163763	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
87416	chr16	70677521	70677780	+	0	NA	intron (NM_138383, intron 9 of 14)	intron (NM_138383, intron 9 of 14)	8403	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
170940	chr3	194326471	194327700	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-14281	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
28933	chr10	63197821	63198080	+	0	NA	intron (NM_001322258, intron 11 of 24)	MER20|DNA|hAT-Charlie	64622	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
56430	chr12	113361251	113362200	+	0	NA	intron (NM_173542, intron 1 of 11)	intron (NM_173542, intron 1 of 11)	3138	NM_173542	196463		NM_173542	ENSG00000151176	PLBD2	P76	phospholipase B domain containing 2	protein-coding
62944	chr13	111384901	111385450	+	0	NA	Intergenic	Intergenic	64533	NM_152324	121793		NM_152324	ENSG00000153495	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
77541	chr15	84743151	84743450	+	0	NA	Intergenic	AluJb|SINE|Alu	-5292	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
233642	chrX	728751	728850	+	0	NA	Intergenic	Intergenic	104456	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
70336	chr14	101845851	101846230	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	36177	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
89344	chr16	88758071	88758650	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	15593	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
71890	chr15	22488171	22488680	+	0	NA	Intergenic	L1ME3|LINE|L1	-6051	NR_036470	100132101		NR_036470		HERC2P7	-	HERC2 pseudogene 7	pseudo
153837	chr22	30005001	30005530	+	0	NA	intron (NM_153051, intron 9 of 18)	intron (NM_153051, intron 9 of 18)	-1784	NR_106876	102466742		NR_106876	ENSG00000275818	MIR6818	hsa-mir-6818	microRNA 6818	ncRNA
139312	chr2	219534371	219534700	+	0	NA	intron (NM_018674, intron 5 of 9)	LTR33|LTR|ERVL	8562	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
192391	chr6	24767751	24768050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7037	NM_001251990	51053		NM_015895	ENSG00000112312	GMNN	Gem|MGORS6	geminin DNA replication inhibitor	protein-coding
125959	chr2	25226651	25227230	+	0	NA	TTS (NM_022552)	TTS (NM_022552)	22627	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
36806	chr11	9613801	9614950	+	0	NA	Intergenic	CpG	39688	NM_001143976	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
52036	chr12	54004921	54005300	+	0	NA	Intergenic	Intergenic	-3875	NM_022658	3224		NM_022658	ENSG00000037965	HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
204621	chr7	5375801	5376500	+	0	NA	exon (NM_001080495, exon 9 of 30)	exon (NM_001080495, exon 9 of 30)	47396	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
32061	chr10	101073951	101074450	+	0	NA	Intergenic	Intergenic	7817	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
21730	chr1	206791351	206791980	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-19171	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
212720	chr7	129801471	129801630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-26536	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
200629	chr6	136820101	136820300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2392	NM_000288	5191		NM_000288	ENSG00000112357	PEX7	PBD9B|PTS2R|RCDP1|RD	peroxisomal biogenesis factor 7	protein-coding
130627	chr2	86037311	86037700	+	0	NA	intron (NM_015425, intron 27 of 33)	intron (NM_015425, intron 27 of 33)	68381	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
226536	chr9	72280921	72281400	+	0	NA	Intergenic	Intergenic	-24276	NR_110952	100507540		NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
12493	chr1	107956871	107957030	+	0	NA	intron (NM_006113, intron 1 of 26)	L2b|LINE|L2	-7493	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
157853	chr22	48641201	48641600	+	0	NA	intron (NM_015381, intron 1 of 3)	intron (NM_015381, intron 1 of 3)	65060	NM_015381	25817		NM_015381	ENSG00000219438	TAFA5	FAM19A5|QLLK5208|TAFA-5|UNQ5208	TAFA chemokine like family member 5	protein-coding
143330	chr20	25695021	25695280	+	0	NA	intron (NM_015655, intron 1 of 4)	AluSx1|SINE|Alu	1703	NM_015655	26152		NM_015655	ENSG00000130684	ZNF337	-	zinc finger protein 337	protein-coding
124838	chr2	7737801	7738030	+	0	NA	Intergenic	Intergenic	161740	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
92670	chr17	11644371	11644530	+	0	NA	intron (NM_001372, intron 10 of 68)	intron (NM_001372, intron 10 of 68)	45980	NM_001372	1770		NM_001372	ENSG00000007174	DNAH9	CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	dynein axonemal heavy chain 9	protein-coding
226811	chr9	77176171	77176330	+	0	NA	TTS (NR_026668)	TTS (NR_026668)	-1195	NM_015186	23230		NM_015186	ENSG00000197969	VPS13A	BLTP5A|CHAC|CHOREIN	vacuolar protein sorting 13 homolog A	protein-coding
218045	chr8	38807171	38807650	+	0	NA	intron (NM_001352791, intron 1 of 11)	intron (NM_001352791, intron 1 of 11)	1960	NM_001352802	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
84084	chr16	29608521	29608980	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	4967	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
179569	chr4	185215001	185215200	+	0	NA	intron (NM_001378032, intron 1 of 19)	AluY|SINE|Alu	5543	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
199387	chr6	116278961	116280980	+	0	NA	promoter-TSS (NR_136524)	promoter-TSS (NR_136524)	-40	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
97686	chr17	44309771	44310330	+	0	NA	intron (NM_001144825, intron 1 of 10)	intron (NM_001144825, intron 1 of 10)	1449	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
11831	chr1	92878851	92878950	+	0	NA	intron (NM_001006605, intron 1 of 4)	AluSz|SINE|Alu	-1750	NM_001252271	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
15839	chr1	151349251	151349550	+	0	NA	Intergenic	AluJr|SINE|Alu	-2148	NM_001025603	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
195499	chr6	37175821	37176180	+	0	NA	TTS (NM_002648)	TTS (NM_002648)	5848	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
162708	chr3	49000771	49001380	+	0	NA	intron (NM_177939, intron 2 of 8)	intron (NM_177939, intron 2 of 8)	-6316	NM_018031	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
165661	chr3	101854321	101854580	+	0	NA	intron (NM_031419, intron 5 of 11)	intron (NM_031419, intron 5 of 11)	4936	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
25097	chr10	3892001	3893050	+	0	NA	Intergenic	Intergenic	58575	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
107021	chr18	32094451	32094930	+	0	NA	intron (NM_198128, intron 1 of 4)	intron (NM_198128, intron 1 of 4)	2084	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
217520	chr8	29232071	29232230	+	0	NA	intron (NM_015254, intron 2 of 39)	AluJb|SINE|Alu	30920	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
64726	chr14	34465151	34465480	+	0	NA	Intergenic	L2c|LINE|L2	-3075	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
180102	chr5	1172771	1173680	+	0	NA	non-coding (NR_109911, exon 5 of 5)	non-coding (NR_109911, exon 5 of 5)	5380	NR_109911	101928857		NR_109911	ENSG00000249201	TERLR1	CTD-3080P12.3	TERT regulating lncRNA 1	ncRNA
153004	chr22	23184071	23184830	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	3941	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
68180	chr14	76147901	76148300	+	0	NA	Intergenic	L2|LINE|L2	-3785	NM_001322029	55668		NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G-patch domain containing 2 like	protein-coding
179680	chr4	190065551	190065980	+	0	NA	exon (NM_001293798, exon 3 of 4)	exon (NM_001293798, exon 3 of 4)	536	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
153331	chr22	24303971	24304330	+	0	NA	intron (NM_001254732, intron 2 of 14)	intron (NM_001254732, intron 2 of 14)	33319	NM_001254732	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
90237	chr17	734371	735030	+	0	NA	intron (NM_001318008, intron 2 of 2)	intron (NM_001318008, intron 2 of 2)	2104	NM_024792	79850		NM_024792	ENSG00000167695	TLCD3A	CT120|FAM57A	TLC domain containing 3A	protein-coding
40761	chr11	64849771	64850150	+	0	NA	Intergenic	Intergenic	-5307	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
161924	chr3	46067751	46068930	+	0	NA	intron (NM_001381860, intron 1 of 3)	MER20|DNA|hAT-Charlie	17504	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
192897	chr6	27518671	27519690	+	0	NA	Intergenic	CpG	-46062	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
11138	chr1	86713401	86713600	+	0	NA	intron (NM_001206653, intron 1 of 7)	intron (NM_001206653, intron 1 of 7)	8924	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
221399	chr8	123505471	123505830	+	0	NA	intron (NM_148177, intron 4 of 5)	AluSx|SINE|Alu	26493	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
173573	chr4	10112771	10113380	+	0	NA	intron (NM_017491, intron 2 of 14)	AluSz|SINE|Alu	3724	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
184963	chr5	113330321	113331000	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	-35722	NM_002387	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
41543	chr11	66287401	66287700	+	0	NA	intron (NM_001300861, intron 4 of 6)	(CCCAC)n|Simple_repeat|Simple_repeat	1593	NM_001300861	10897		NM_020470	ENSG00000174851	YIF1A	54TM|FinGER7|YIF1|YIF1P	Yip1 interacting factor homolog A, membrane trafficking protein	protein-coding
192436	chr6	24891771	24892600	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-14820	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
143284	chr20	25258251	25258750	+	0	NA	intron (NM_002862, intron 1 of 19)	L1MD3|LINE|L1	10415	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
169310	chr3	158732021	158733080	+	0	NA	promoter-TSS (NM_002888)	promoter-TSS (NM_002888)	-64	NM_002888	5918		NM_002888	ENSG00000118849	RARRES1	LXNL|PERG-1|TIG1	retinoic acid receptor responder 1	protein-coding
129134	chr2	65320021	65320700	+	0	NA	intron (NM_181784, intron 4 of 5)	intron (NM_181784, intron 4 of 5)	46418	NM_001128210	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
9437	chr1	48775171	48775330	+	0	NA	intron (NM_001349795, intron 2 of 7)	intron (NM_001349795, intron 2 of 7)	1641	NM_024603	79656		NM_024603	ENSG00000162373	BEND5	C1orf165	BEN domain containing 5	protein-coding
80984	chr16	3964471	3964630	+	0	NA	3' UTR (NM_001116, exon 11 of 11)	3' UTR (NM_001116, exon 11 of 11)	-14106	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
197842	chr6	88734671	88734930	+	0	NA	intron (NM_001286428, intron 11 of 13)	MER47A|DNA|TcMar-Tigger	-195431	NR_110867	101928936		NR_110867		LOC101928936	-	uncharacterized LOC101928936	ncRNA
53321	chr12	64613421	64614200	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJb|SINE|Alu	3315	NM_178169	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
27682	chr10	33115461	33116780	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	687	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
99148	chr17	49353471	49353830	+	0	NA	intron (NR_135579, intron 1 of 7)	MER112|DNA|hAT-Charlie	-7515	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
154155	chr22	31278841	31280450	+	0	NA	3' UTR (NM_016733, exon 15 of 15)	3' UTR (NM_016733, exon 15 of 15)	12843	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
151476	chr21	46243951	46244050	+	0	NA	intron (NM_003906, intron 23 of 27)	MER5A|DNA|hAT-Charlie	14769	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
146273	chr20	49053971	49054650	+	0	NA	intron (NM_001362762, intron 1 of 24)	intron (NM_001362762, intron 1 of 24)	7998	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
163146	chr3	50146371	50146930	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-8408	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
165805	chr3	105814851	105815150	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	52591	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
61928	chr13	78586651	78586980	+	0	NA	intron (NR_047001, intron 3 of 5)	intron (NR_047001, intron 3 of 5)	-9307	NR_158457	780529		NR_158457	ENSG00000271776	LOC780529	-	uncharacterized LOC780529	ncRNA
186741	chr5	139301951	139302530	+	0	NA	intron (NM_001194956, intron 1 of 13)	AluSx|SINE|Alu	8490	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
176584	chr4	98828871	98829130	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	100133	NM_001130678	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
75675	chr15	67822751	67823780	+	0	NA	Intergenic	(GCGG)n|Simple_repeat|Simple_repeat	-2244	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
232121	chr9	133792601	133793300	+	0	NA	intron (NM_001134398, intron 12 of 29)	intron (NM_001134398, intron 12 of 29)	-52995	NM_007101	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
99841	chr17	55356571	55357050	+	0	NA	Intergenic	Intergenic	65025	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
103481	chr17	78354901	78355750	+	0	NA	Intergenic	Intergenic	4342	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
212173	chr7	116930071	116931300	+	0	NA	Intergenic	Intergenic	-22816	NM_001369607	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
55184	chr12	100717321	100717580	+	0	NA	Intergenic	CpG	-77326	NM_001286615	121601		NM_178826	ENSG00000151572	ANO4	TMEM16D	anoctamin 4	protein-coding
187151	chr5	140553301	140553500	+	0	NA	intron (NM_001035235, intron 2 of 4)	L2b|LINE|L2	4056	NR_045587	10011		NM_001035235	ENSG00000213523	SRA1	SRA|SRAP|STRAA1|pp7684	steroid receptor RNA activator 1	protein-coding
75714	chr15	68100151	68100450	+	0	NA	intron (NM_001320687, intron 3 of 14)	L1MD1|LINE|L1	45724	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
66752	chr14	64515571	64516430	+	0	NA	intron (NR_110550, intron 3 of 3)	AluJo|SINE|Alu	-10787	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
129616	chr2	70111321	70112150	+	0	NA	Intergenic	FAM|SINE|Alu	13581	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
78655	chr15	94297401	94297800	+	0	NA	intron (NM_001385002, intron 2 of 23)	intron (NM_001385002, intron 2 of 23)	-58330	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
156541	chr22	41430451	41431050	+	0	NA	Intergenic	AluY|SINE|Alu	16051	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
21828	chr1	207335421	207336380	+	0	NA	intron (NM_001300904, intron 6 of 10)	MIRb|SINE|MIR	14222	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
229110	chr9	114394071	114394430	+	0	NA	intron (NM_030767, intron 1 of 21)	intron (NM_030767, intron 1 of 21)	155	NM_001317952	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
94793	chr17	31094271	31095450	+	0	NA	promoter-TSS (NM_000267)	promoter-TSS (NM_000267)	-67	NM_000267	4763		NM_000267	ENSG00000196712	NF1	NFNS|VRNF|WSS	neurofibromin 1	protein-coding
128299	chr2	54628171	54629100	+	0	NA	intron (NM_178313, intron 12 of 30)	intron (NM_178313, intron 12 of 30)	70241	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
160407	chr3	28242751	28243050	+	0	NA	intron (NM_001331187, intron 1 of 3)	intron (NM_001331187, intron 1 of 3)	1281	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
205915	chr7	25603121	25603660	+	0	NA	intron (NR_157815, intron 3 of 4)	L1PA2|LINE|L1	59750	NR_157819	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
36281	chr11	3802371	3802530	+	0	NA	intron (NR_027017, intron 1 of 7)	intron (NR_027017, intron 1 of 7)	4552	NM_001346401	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
208453	chr7	66936071	66936230	+	0	NA	intron (NM_017994, intron 1 of 6)	L1M1|LINE|L1	14925	NM_017994	55069		NM_017994	ENSG00000106609	TMEM248	C7orf42	transmembrane protein 248	protein-coding
1804	chr1	6201701	6201900	+	0	NA	Intergenic	Intergenic	-2205	NM_000983	6146		NM_000983	ENSG00000116251	RPL22	EAP|HBP15|HBP15/L22|L22|eL22	ribosomal protein L22	protein-coding
96382	chr17	40112971	40113900	+	0	NA	Intergenic	Intergenic	-8536	NM_001012241	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
131454	chr2	96337301	96337600	+	0	NA	intron (NM_001281712, intron 1 of 16)	AluY|SINE|Alu	1684	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
13268	chr1	112743271	112743430	+	0	NA	Intergenic	Intergenic	24445	NR_169586	284467		NM_182759	ENSG00000184599	TAFA3	FAM19A3|TAFA-3	TAFA chemokine like family member 3	protein-coding
173240	chr4	6940001	6940780	+	0	NA	intron (NM_020773, intron 2 of 13)	intron (NM_020773, intron 2 of 13)	-13776	NM_001330638	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
96518	chr17	40335751	40336250	+	0	NA	intron (NM_001145302, intron 2 of 6)	AluJb|SINE|Alu	-6166	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
73447	chr15	43293421	43294100	+	0	NA	intron (NM_052955, intron 1 of 12)	intron (NM_052955, intron 1 of 12)	8495	NM_052955	116179		NM_052955	ENSG00000159495	TGM7	TGMZ	transglutaminase 7	protein-coding
100644	chr17	63690371	63690530	+	0	NA	intron (NM_001363768, intron 13 of 16)	intron (NM_001363768, intron 13 of 16)	9675	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
193623	chr6	30767751	30768130	+	0	NA	intron (NR_138037, intron 1 of 3)	AluJb|SINE|Alu	1115	NR_138037	105375013		NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20	ncRNA
21121	chr1	203632171	203632530	+	0	NA	intron (NM_001365784, intron 1 of 20)	AluY|SINE|Alu	4413	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
25129	chr10	4069071	4069250	+	0	NA	intron (NR_120632, intron 1 of 3)	(TAACCC)n|Simple_repeat|Simple_repeat	17434	NR_120632								
30376	chr10	78035201	78035400	+	0	NA	intron (NM_033022, intron 1 of 5)	intron (NM_033022, intron 1 of 5)	1437	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
54845	chr12	95216901	95219010	+	0	NA	promoter-TSS (NM_018351)	promoter-TSS (NM_018351)	148	NM_001352119	55591		NM_017599	ENSG00000028203	VEZT	VEZATIN	vezatin, adherens junctions transmembrane protein	protein-coding
141778	chr2	242084621	242085500	+	0	NA	promoter-TSS (NR_146651)	promoter-TSS (NR_146651)	-922	NR_146651	105373979		NR_146651	ENSG00000232002	LINC01880	-	long intergenic non-protein coding RNA 1880	ncRNA
4171	chr1	19404151	19404450	+	0	NA	intron (NM_001313932, intron 2 of 4)	AluSz|SINE|Alu	79995	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
223346	chr8	143842971	143843380	+	0	NA	Intergenic	L2a|LINE|L2	-2202	NM_178564	340371		NM_178564	ENSG00000185189	NRBP2	TRG16|pp9320	nuclear receptor binding protein 2	protein-coding
238546	chrX	153767171	153767330	+	0	NA	exon (NM_005393, exon 3 of 36)	exon (NM_005393, exon 3 of 36)	3001	NM_005393	5365		NM_005393	ENSG00000198753	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
189271	chr5	172071151	172072180	+	0	NA	intron (NM_005990, intron 12 of 18)	LTR43|LTR|ERV1	-65027	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
19815	chr1	182617951	182618650	+	0	NA	Intergenic	Intergenic	3160	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
124467	chr19	58538321	58539280	+	0	NA	5' UTR (NM_001316982, exon 1 of 3)	5' UTR (NM_001316982, exon 1 of 3)	111	NM_001316982	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
63533	chr14	16030051	16030230	+	0	NA	Intergenic	Intergenic	-2570977	NM_001013354	440153		NM_001013354	ENSG00000257115	OR11H12	-	olfactory receptor family 11 subfamily H member 12	protein-coding
236355	chrX	70438901	70439480	+	0	NA	Intergenic	L1MDa|LINE|L1	-5645	NM_021120	1741		NM_020730	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|PPP1R82|SAP102|XLID90|XLMR	discs large MAGUK scaffold protein 3	protein-coding
146540	chr20	49964921	49965200	+	0	NA	Intergenic	Intergenic	-17920	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
149743	chr21	34443501	34443780	+	0	NA	Intergenic	Intergenic	12169	NM_001127670	3753		NM_000219	ENSG00000180509	KCNE1	ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK	potassium voltage-gated channel subfamily E regulatory subunit 1	protein-coding
86335	chr16	66428751	66428850	+	0	NA	intron (NM_001136106, intron 1 of 3)	intron (NM_001136106, intron 1 of 3)	1505	NM_001197225	146227		NM_001136106	ENSG00000166546	BEAN1	BEAN|SCA31	brain expressed associated with NEDD4 1	protein-coding
161042	chr3	38006471	38006630	+	0	NA	TTS (NM_001130964)	TTS (NM_001130964)	12412	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
48628	chr12	10384271	10384430	+	0	NA	intron (NR_120430, intron 3 of 3)	L1MA5|LINE|L1	5691	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
194395	chr6	33000021	33000600	+	0	NA	Intergenic	Intergenic	9281	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
61364	chr13	51222101	51222750	+	0	NA	promoter-TSS (NM_001242312)	promoter-TSS (NM_001242312)	27	NM_001242312	220108		NM_145019	ENSG00000150510	FAM124A	-	family with sequence similarity 124 member A	protein-coding
202625	chr6	158745851	158746250	+	0	NA	intron (NM_001318745, intron 9 of 14)	MLT1A0|LTR|ERVL-MaLR	18703	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
24469	chr1	244049301	244050600	+	0	NA	intron (NM_001278196, intron 1 of 1)	intron (NM_001278196, intron 1 of 1)	1011	NM_001278196	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
180474	chr5	11880531	11880730	+	0	NA	intron (NM_001332, intron 1 of 21)	(ACT)n|Simple_repeat|Simple_repeat	23816	NM_001332	1501		NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
72488	chr15	32618701	32618900	+	0	NA	intron (NM_199357, intron 1 of 10)	AluY|SINE|Alu	3296	NM_001286480	9824		NM_014783	ENSG00000198826	ARHGAP11A	GAP (1-12)	Rho GTPase activating protein 11A	protein-coding
26386	chr10	16904351	16904650	+	0	NA	intron (NM_001081, intron 50 of 66)	intron (NM_001081, intron 50 of 66)	-87046	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
10850	chr1	77966071	77966630	+	0	NA	intron (NR_146539, intron 7 of 22)	L2a|LINE|L2	12722	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
37969	chr11	34707171	34707730	+	0	NA	Intergenic	L1MA2|LINE|L1	65078	NM_001378046	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
221093	chr8	117513751	117514250	+	0	NA	Intergenic	Intergenic	-6713	NM_001282986	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
217377	chr8	28083601	28084430	+	0	NA	promoter-TSS (NM_001010906)	promoter-TSS (NM_001010906)	-79	NM_001010906	389643		NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC|SLIPGC	nuclear GTPase, germinal center associated	protein-coding
149644	chr21	33545551	33545900	+	0	NA	intron (NM_032195, intron 1 of 6)	intron (NM_032195, intron 1 of 6)	2687	NR_103797	6651		NM_003103	ENSG00000159140	SON	BASS1|C21orf50|DBP-5|NREBP|SON3|TOKIMS	SON DNA and RNA binding protein	protein-coding
116447	chr19	18053701	18054100	+	0	NA	Intergenic	L1MB5|LINE|L1	33034	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
237241	chrX	110001951	110003630	+	0	NA	promoter-TSS (NM_001353850)	promoter-TSS (NM_001353850)	127	NM_001353849	84187		NM_017698	ENSG00000157600	TMEM164	bB360B22.3	transmembrane protein 164	protein-coding
161199	chr3	39147801	39148800	+	0	NA	promoter-TSS (NM_001320559)	promoter-TSS (NM_001320559)	-870	NM_001320559	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
92521	chr17	8915501	8916750	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	-3608	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
20271	chr1	194151201	194151400	+	0	NA	Intergenic	L1MEg|LINE|L1	846555	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
35412	chr11	1397751	1398050	+	0	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	7966	NM_003957	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
175552	chr4	75511771	75511930	+	0	NA	intron (NM_001278538, intron 1 of 8)	Charlie1a|DNA|hAT-Charlie	-2554	NR_103725	25898		NM_015436	ENSG00000163743	RCHY1	ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363	ring finger and CHY zinc finger domain containing 1	protein-coding
199014	chr6	111092251	111092750	+	0	NA	intron (NM_018593, intron 1 of 5)	AluSx4|SINE|Alu	4997	NM_018593	117247		NM_018593	ENSG00000112394	SLC16A10	MCT10|PRO0813|TAT1	solute carrier family 16 member 10	protein-coding
75222	chr15	64853421	64853980	+	0	NA	intron (NM_025201, intron 2 of 5)	MIRc|SINE|MIR	11785	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
133118	chr2	112653071	112654130	+	0	NA	intron (NM_005415, intron 5 of 10)	MER112|DNA|hAT-Charlie	7661	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
206178	chr7	28124571	28124930	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-55707	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
193724	chr6	31201721	31201980	+	0	NA	intron (NR_026791, intron 1 of 1)	AluSc|SINE|Alu	4090	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
100743	chr17	63932001	63932900	+	0	NA	promoter-TSS (NM_001329050)	promoter-TSS (NM_001329050)	-119	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
78553	chr15	92986721	92986980	+	0	NA	intron (NM_001271, intron 26 of 38)	AluJr4|SINE|Alu	82451	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
218469	chr8	48979051	48979260	+	0	NA	Intergenic	Intergenic	-57726	NM_003068	6591		NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding
109164	chr19	290871	291130	+	0	NA	exon (NM_177543, exon 1 of 6)	exon (NM_177543, exon 1 of 6)	139	NM_177543	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
169983	chr3	179559571	179559730	+	0	NA	Intergenic	AluSz|SINE|Alu	-3230	NM_177989	86		NM_004301	ENSG00000136518	ACTL6A	ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K|SMARCN1	actin like 6A	protein-coding
15054	chr1	148404651	148405450	+	0	NA	intron (NR_168363, intron 1 of 6)	intron (NR_168363, intron 1 of 6)	2335	NR_104081	101954272		NR_104081	ENSG00000201183	RNVU1-3	RNU1-113|RNU1-151|RNVU1-12|vU1.12|vU1.3	RNA, variant U1 small nuclear 3	snRNA
83095	chr16	22448051	22448150	+	0	NA	intron (NR_027154, intron 1 of 28)	L2|LINE|L2	-10385	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
85666	chr16	56280151	56280250	+	0	NA	intron (NM_020988, intron 3 of 8)	intron (NM_020988, intron 3 of 8)	34680	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
60591	chr13	41971351	41972100	+	0	NA	intron (NR_039974, intron 2 of 3)	intron (NR_039974, intron 2 of 3)	10556	NR_039974	100507240		NR_039974	ENSG00000278338	VWA8-AS1	-	VWA8 antisense RNA 1 (head to head)	ncRNA
169212	chr3	157079621	157079880	+	0	NA	Intergenic	Intergenic	-2091	NR_135546	105374177		NR_135546	ENSG00000241544	LINC02029	-	long intergenic non-protein coding RNA 2029	ncRNA
212593	chr7	129052151	129052450	+	0	NA	intron (NR_167926, intron 1 of 21)	LTR33|LTR|ERVL	2811	NM_001382222	23534		NM_012470	ENSG00000064419	TNPO3	IPO12|LGMD1F|LGMDD2|MTR10A|TRN-SR|TRN-SR2|TRNSR	transportin 3	protein-coding
197275	chr6	70685771	70686000	+	0	NA	intron (NM_001281440, intron 1 of 10)	intron (NM_001281440, intron 1 of 10)	17355	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
196960	chr6	52883921	52884050	+	0	NA	Intergenic	LTR5A|LTR|ERVK	25713	NM_001363542	2940		NM_000847	ENSG00000174156	GSTA3	GSTA3-3|GTA3	glutathione S-transferase alpha 3	protein-coding
40142	chr11	62845901	62846100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4191	NM_001369451	54663		NM_018093	ENSG00000133316	WDR74	Nsa1	WD repeat domain 74	protein-coding
173193	chr4	6780021	6780480	+	0	NA	Intergenic	Intergenic	-2477	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
15542	chr1	150536871	150537230	+	0	NA	Intergenic	Intergenic	-12358	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
158703	chr3	7876841	7878000	+	0	NA	Intergenic	Intergenic	138887	NR_110131	101927394		NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
53420	chr12	64782371	64782730	+	0	NA	intron (NM_001330188, intron 1 of 13)	intron (NM_001330188, intron 1 of 13)	1795	NM_001330188	23329		NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
94344	chr17	28879321	28879780	+	0	NA	3' UTR (NM_001330170, exon 11 of 11)	3' UTR (NM_001330170, exon 11 of 11)	-17820	NR_039885	100616385		NR_039885	ENSG00000284085	MIR4732	mir-4732	microRNA 4732	ncRNA
198329	chr6	101845351	101846050	+	0	NA	intron (NM_021956, intron 10 of 16)	L1MB5|LINE|L1	446715	NM_001166247	2898		NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6|NEDLAS	glutamate ionotropic receptor kainate type subunit 2	protein-coding
155788	chr22	39294621	39295280	+	0	NA	Intergenic	MIR3|SINE|MIR	18961	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
3279	chr1	15250721	15250980	+	0	NA	intron (NM_052929, intron 1 of 30)	intron (NM_052929, intron 1 of 30)	3625	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
83060	chr16	22338671	22339030	+	0	NA	Intergenic	AluSx|SINE|Alu	35769	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
142509	chr20	4813071	4813230	+	0	NA	intron (NM_014737, intron 2 of 11)	intron (NM_014737, intron 2 of 11)	1973	NM_170774	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
191244	chr6	5868471	5868630	+	0	NA	Intergenic	AluSz|SINE|Alu	135494	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
214297	chr7	149125601	149127200	+	0	NA	promoter-TSS (NM_001001661)	promoter-TSS (NM_001001661)	-8	NM_020781	57541		NM_020781	ENSG00000197024	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding
63635	chr14	20697651	20698050	+	0	NA	intron (NM_001282192, intron 2 of 2)	intron (NM_001282192, intron 2 of 2)	9086	NM_001385274	283		NM_001145	ENSG00000214274	ANG	ALS9|HEL168|RAA1|RNASE4|RNASE5	angiogenin	protein-coding
235335	chrX	43949721	43950150	+	0	NA	non-coding (NR_046631, exon 1 of 6)	non-coding (NR_046631, exon 1 of 6)	203	NR_046631	100873919		NR_046631	ENSG00000236276	NDP-AS1	-	NDP antisense RNA 1	ncRNA
60262	chr13	40598851	40599630	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	67401	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
140164	chr2	231618171	231618330	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	25386	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
213645	chr7	139731151	139731580	+	0	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	46633	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
143232	chr20	24987101	24987980	+	0	NA	intron (NM_020531, intron 1 of 8)	L1MB5|LINE|L1	5211	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
115800	chr19	16384701	16385300	+	0	NA	intron (NM_021235, intron 21 of 22)	intron (NM_021235, intron 21 of 22)	60174	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
129182	chr2	68173351	68173850	+	0	NA	intron (NM_020143, intron 6 of 6)	AluSx4|SINE|Alu	15712	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
206566	chr7	35658601	35659500	+	0	NA	intron (NM_022373, intron 5 of 8)	intron (NM_022373, intron 5 of 8)	36085	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
144752	chr20	36601621	36601980	+	0	NA	intron (NM_001199535, intron 2 of 4)	L2|LINE|L2	-3979	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
185949	chr5	132965171	132966250	+	0	NA	Intergenic	Intergenic	-2076	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
88197	chr16	81770871	81771680	+	0	NA	Intergenic	AluJr|SINE|Alu	-8016	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
158954	chr3	10194271	10195980	+	0	NA	intron (NM_001570, intron 2 of 12)	intron (NM_001570, intron 2 of 12)	30206	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
104868	chr17	81855971	81856730	+	0	NA	intron (NM_000918, intron 2 of 10)	AluSq2|SINE|Alu	4185	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
114094	chr19	11116051	11117230	+	0	NA	intron (NM_001195800, intron 9 of 15)	intron (NM_001195800, intron 9 of 15)	3166	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
154014	chr22	30431951	30432600	+	0	NA	promoter-TSS (NR_148046)	promoter-TSS (NR_148046)	-411	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
10496	chr1	66436501	66436900	+	0	NA	Intergenic	MIR3|SINE|MIR	82165	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
39912	chr11	62516371	62516930	+	0	NA	3' UTR (NM_001346446, exon 5 of 5)	3' UTR (NM_001346446, exon 5 of 5)	29014	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
171720	chr3	197934401	197934600	+	0	NA	intron (NM_032263, intron 5 of 11)	intron (NM_032263, intron 5 of 11)	15425	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
152885	chr22	22666601	22666900	+	0	NA	Intergenic	Intergenic	20438	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
124225	chr19	57283051	57284030	+	0	NA	intron (NM_006635, intron 1 of 2)	AluSx|SINE|Alu	3055	NM_006635	10794		NM_006635	ENSG00000197714	ZNF460	HZF8|ZNF272	zinc finger protein 460	protein-coding
230368	chr9	128071701	128073030	+	0	NA	intron (NM_001006641, intron 1 of 9)	intron (NM_001006641, intron 1 of 9)	4165	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
68945	chr14	91394951	91395050	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	22820	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
176532	chr4	98143021	98144280	+	0	NA	promoter-TSS (NM_174952)	promoter-TSS (NM_174952)	-174	NM_174952	285555		NM_174952	ENSG00000163116	STPG2	C4orf37	sperm tail PG-rich repeat containing 2	protein-coding
21904	chr1	207820071	207820230	+	0	NA	non-coding (NR_026817, exon 1 of 1)	non-coding (NR_026817, exon 1 of 1)	1771	NR_026817	148696		NM_001039568		LOC148696	-	uncharacterized LOC148696	ncRNA
119315	chr19	39882671	39882830	+	0	NA	intron (NM_003890, intron 19 of 28)	intron (NM_003890, intron 19 of 28)	-36371	NM_001436	2091		NM_001436	ENSG00000105202	FBL	FIB|FLRN|Nop1|RNU3IP1	fibrillarin	protein-coding
159395	chr3	13447151	13447450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-26978	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
236187	chrX	65663071	65663630	+	0	NA	Intergenic	L1PA16|LINE|L1	-4304	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
182630	chr5	66864501	66864800	+	0	NA	intron (NM_015183, intron 1 of 27)	MLT1C|LTR|ERVL-MaLR	35877	NM_015183	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
158604	chr3	4832821	4833080	+	0	NA	intron (NM_002222, intron 56 of 57)	intron (NM_002222, intron 56 of 57)	73551	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
106189	chr18	10607451	10608280	+	0	NA	Intergenic	Intergenic	18555	NR_146509	102724470		NR_146509		LINC01887	-	long intergenic non-protein coding RNA 1887	ncRNA
122843	chr19	50437321	50437650	+	0	NA	exon (NM_004533, exon 6 of 28)	exon (NM_004533, exon 6 of 28)	4593	NM_004533	4606		NM_004533	ENSG00000086967	MYBPC2	MYBPC|MYBPCF|fsMyBP-C	myosin binding protein C2	protein-coding
161579	chr3	42935501	42936100	+	0	NA	promoter-TSS (NM_001205272)	promoter-TSS (NM_001205272)	-586	NM_001205272	100506243		NM_015673	ENSG00000240747	KRBOX1	-	KRAB box domain containing 1	protein-coding
225556	chr9	35897721	35897980	+	0	NA	Intergenic	AluSx3|SINE|Alu	-8352	NM_001039792	646962		NM_001039792	ENSG00000196196	HRCT1	LGLL338|PRO537|UNQ338	histidine rich carboxyl terminus 1	protein-coding
134108	chr2	134020501	134020980	+	0	NA	Intergenic	Intergenic	-99195	NM_001371457	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
28845	chr10	62529551	62529650	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-154473	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
87498	chr16	71806721	71807350	+	0	NA	intron (NM_001128, intron 1 of 22)	intron (NM_001128, intron 1 of 22)	1799	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
86554	chr16	67194071	67194430	+	0	NA	intron (NM_001950, intron 4 of 9)	intron (NM_001950, intron 4 of 9)	2095	NM_001950	1874		NM_001950	ENSG00000205250	E2F4	E2F-4	E2F transcription factor 4	protein-coding
120070	chr19	42078871	42079730	+	0	NA	exon (NM_001330519, exon 2 of 2)	exon (NM_001330519, exon 2 of 2)	3134	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
61804	chr13	75539071	75539630	+	0	NA	intron (NM_001287394, intron 1 of 2)	AluSx|SINE|Alu	-1478	NM_001287392	170622		NM_203495	ENSG00000188243	COMMD6	Acrg	COMM domain containing 6	protein-coding
104896	chr17	81889501	81889700	+	0	NA	intron (NR_158770, intron 2 of 6)	intron (NR_158770, intron 2 of 6)	-1190	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
95210	chr17	35244201	35245780	+	0	NA	intron (NM_144975, intron 1 of 4)	intron (NM_144975, intron 1 of 4)	1918	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
150889	chr21	44139251	44139350	+	0	NA	intron (NM_198155, intron 4 of 5).2	intron (NM_198155, intron 4 of 5).2	5617	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
220918	chr8	107068751	107068850	+	0	NA	Intergenic	Intergenic	267715	NM_001314051	284		NM_001146	ENSG00000154188	ANGPT1	AGP1|AGPT|AGPT-1|ANG1|HAE5	angiopoietin 1	protein-coding
206598	chr7	35800121	35802230	+	0	NA	promoter-TSS (NR_120512)	promoter-TSS (NR_120512)	-44	NM_001363715	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
22081	chr1	211381871	211382030	+	0	NA	promoter-TSS (NR_026761)	promoter-TSS (NR_026761)	-805	NR_026761	84791		NM_032705	ENSG00000153363	LINC00467	ASAP|C1orf97	long intergenic non-protein coding RNA 467	ncRNA
86042	chr16	57550651	57550750	+	0	NA	intron (NM_153837, intron 1 of 11)	Tigger1|DNA|TcMar-Tigger	8057	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
2901	chr1	11672771	11673800	+	0	NA	exon (NM_018438, exon 5 of 6)	exon (NM_018438, exon 5 of 6)	7863	NM_006341	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
4032	chr1	18945651	18945850	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	10926	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
146018	chr20	46709551	46710050	+	0	NA	intron (NM_030777, intron 1 of 4)	CpG	151	NM_030777	81031		NM_030777	ENSG00000197496	SLC2A10	ATORS|ATS|GLUT10	solute carrier family 2 member 10	protein-coding
154387	chr22	35257151	35258450	+	0	NA	intron (NM_001362972, intron 1 of 9)	CpG	307	NM_001003681	10042		NM_005487	ENSG00000100281	HMGXB4	HMG2L1|HMGBCG|P53N|THC211630	HMG-box containing 4	protein-coding
87105	chr16	68592401	68592780	+	0	NA	Intergenic	L2a|LINE|L2	-52720	NM_001317196	1001		NM_001793	ENSG00000062038	CDH3	CDHP|HJMD|PCAD	cadherin 3	protein-coding
138976	chr2	218281101	218281300	+	0	NA	intron (NR_135643, intron 1 of 10)	AluSx|SINE|Alu	-1012	NR_106768	102465256		NR_106768	ENSG00000284173	MIR6513	hsa-mir-6513|mir-6513	microRNA 6513	ncRNA
196648	chr6	44296171	44296650	+	0	NA	intron (NM_182539, intron 1 of 4)	intron (NM_182539, intron 1 of 4)	1288	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
230396	chr9	128107071	128107600	+	0	NA	exon (NM_001330988, exon 11 of 11)	exon (NM_001330988, exon 11 of 11)	8853	NR_049766	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
109505	chr19	831751	832400	+	0	NA	TTS (NM_001700)	TTS (NM_001700)	4238	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
41645	chr11	66495571	66495730	+	0	NA	exon (NM_130443, exon 15 of 18)	exon (NM_130443, exon 15 of 18)	-14985	NM_024649	582		NM_024649	ENSG00000174483	BBS1	BBS2L2	Bardet-Biedl syndrome 1	protein-coding
128726	chr2	61857221	61857480	+	0	NA	Intergenic	Intergenic	-3290	NM_032180	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
185588	chr5	131397071	131397230	+	0	NA	Intergenic	Intergenic	133097	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
5376	chr1	25428201	25429030	+	0	NA	Intergenic	Intergenic	-2243	NM_001282564	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
188503	chr5	154860301	154860900	+	0	NA	intron (NM_001301075, intron 1 of 5)	intron (NM_001301075, intron 1 of 5)	1973	NM_001301075	9337		NM_004779	ENSG00000155508	CNOT8	CAF1|CALIF|Caf1b|POP2|hCAF1	CCR4-NOT transcription complex subunit 8	protein-coding
199155	chr6	111733371	111733730	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	25581	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
173342	chr4	7758321	7758630	+	0	NA	TTS (NM_001134647)	TTS (NM_001134647)	4385	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
214122	chr7	144195021	144197350	+	0	NA	promoter-TSS (NM_001003702)	promoter-TSS (NM_001003702)	-306	NM_001368318	445328		NM_001003702	ENSG00000213214	ARHGEF35	ARHGEF5L	Rho guanine nucleotide exchange factor 35	protein-coding
139804	chr2	230325251	230325830	+	0	NA	Intergenic	Intergenic	-1631	NM_001308163	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
104437	chr17	81083421	81083680	+	0	NA	promoter-TSS (NM_001385153)	promoter-TSS (NM_001385153)	11	NM_001385156	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
234439	chrX	16868171	16868330	+	0	NA	intron (NM_002893, intron 2 of 11)	intron (NM_002893, intron 2 of 11)	1613	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
145486	chr20	43916821	43917330	+	0	NA	intron (NM_001098796, intron 1 of 8)	intron (NM_001098796, intron 1 of 8)	945	NM_001098796	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
88029	chr16	81205071	81205250	+	0	NA	intron (NR_126532, intron 5 of 42)	intron (NR_126532, intron 5 of 42)	15234	NM_001076780	114780		NM_052892	ENSG00000166473	PKD1L2	PC1L2	polycystin 1 like 2 (gene/pseudogene)	protein-coding
58469	chr12	132139971	132140580	+	0	NA	intron (NM_175066, intron 11 of 14)	intron (NM_175066, intron 11 of 14)	4044	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
18074	chr1	160652321	160652780	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-5239	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
219285	chr8	67678971	67679130	+	0	NA	intron (NM_020361, intron 1 of 10)	L1ME3A|LINE|L1	67310	NM_020361	57094		NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
32425	chr10	102481251	102481700	+	0	NA	intron (NM_005736, intron 9 of 10)	intron (NM_005736, intron 9 of 10)	20080	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
75573	chr15	67067701	67068450	+	0	NA	intron (NM_005902, intron 1 of 8)	MIRc|SINE|MIR	2473	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
198023	chr6	90132951	90133250	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	163743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
32373	chr10	102402451	102403180	+	0	NA	TTS (NM_001261403)	TTS (NM_001261403)	6462	NR_073110	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
46251	chr11	124744871	124745300	+	0	NA	intron (NM_006176, intron 1 of 3)	intron (NM_006176, intron 1 of 3)	5143	NM_001126181	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
140505	chr2	233204271	233204980	+	0	NA	exon (NM_005541, exon 26 of 27).2	exon (NM_005541, exon 26 of 27).2	-46946	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
72215	chr15	30178521	30179100	+	0	NA	Intergenic	Intergenic	-17226	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
23545	chr1	229254751	229255280	+	0	NA	Intergenic	Intergenic	-16047	NR_073545	5867		NM_004578	ENSG00000168118	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
105761	chr18	2774521	2774980	+	0	NA	intron (NM_015295, intron 41 of 47)	intron (NM_015295, intron 41 of 47)	-72256	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
181235	chr5	39192601	39193100	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	26713	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
184183	chr5	95822101	95823280	+	0	NA	promoter-TSS (NM_001243658)	promoter-TSS (NM_001243658)	36	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
140932	chr2	237728321	237728580	+	0	NA	intron (NM_001137550, intron 8 of 23)	intron (NM_001137550, intron 8 of 23)	36245	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
102608	chr17	75939551	75939730	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1408	NM_001319193	85302		NM_001080542	ENSG00000188878	FBF1	Alb|FBF-1	Fas binding factor 1	protein-coding
17221	chr1	156280101	156280600	+	0	NA	intron (NM_001323617, intron 2 of 22)	intron (NM_001323617, intron 2 of 22)	2475	NM_015327	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
151065	chr21	44763601	44764180	+	0	NA	Intergenic	Intergenic	37930	NM_182688	7327		NM_003343	ENSG00000184787	UBE2G2	UBC7	ubiquitin conjugating enzyme E2 G2	protein-coding
230431	chr9	128152221	128152800	+	0	NA	intron (NM_005564, intron 5 of 6)	intron (NM_005564, intron 5 of 6)	3057	NM_005564	3934		NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL|p25	lipocalin 2	protein-coding
209039	chr7	74649671	74650880	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-7390	NM_001280800	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
139037	chr2	218567901	218569880	+	0	NA	promoter-TSS (NM_020935)	promoter-TSS (NM_020935)	51	NR_073390	9125		NM_005444	ENSG00000144580	CNOT9	CAF40|CT129|RCD-1|RCD1|RQCD1	CCR4-NOT transcription complex subunit 9	protein-coding
232890	chr9	136843431	136844350	+	0	NA	intron (NM_001080482, intron 1 of 2)	CpG	1412	NM_001080482	389813		NM_001080482	ENSG00000232434	AJM1	C9orf172|ajm-1	apical junction component 1 homolog	protein-coding
228774	chr9	110791301	110791600	+	0	NA	intron (NM_001369398, intron 8 of 8)	L1HS|LINE|L1	63188	NM_001369398	4593		NM_005592	ENSG00000030304	MUSK	CMS9|FADS|FADS1	muscle associated receptor tyrosine kinase	protein-coding
166471	chr3	114234751	114236030	+	0	NA	3' UTR (NM_007136, exon 1 of 1)	3' UTR (NM_007136, exon 1 of 1)	2188	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
10285	chr1	64840601	64841200	+	0	NA	intron (NM_001321857, intron 19 of 24)	intron (NM_001321857, intron 19 of 24)	95825	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
216352	chr8	17152121	17152630	+	0	NA	Intergenic	AluSq|SINE|Alu	-4107	NM_016353	51201		NM_016353	ENSG00000104219	ZDHHC2	DHHC2|ZNF372	zinc finger DHHC-type palmitoyltransferase 2	protein-coding
102958	chr17	76700421	76701330	+	0	NA	intron (NM_001008528, intron 1 of 3)	L2a|LINE|L2	8722	NR_130926	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
190126	chr5	178003471	178003630	+	0	NA	Intergenic	AluSc5|SINE|Alu	-4142	NR_149722	653316		NM_001079527	ENSG00000204677	FAM153CP	FAM153C|NY-REN-7-like	protein FAM153C	pseudo
46771	chr11	129865721	129866230	+	0	NA	exon (NM_006165, exon 23 of 25)	exon (NM_006165, exon 23 of 25)	27034	NM_006165	4798		NM_006165	ENSG00000170322	NFRKB	INO80G	nuclear factor related to kappaB binding protein	protein-coding
185976	chr5	133170421	133171280	+	0	NA	Intergenic	L1P2|LINE|L1	118837	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
239380	chrY	21011371	21011530	+	0	NA	Intergenic	L1PA2|LINE|L1	255342	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
37662	chr11	22828951	22830430	+	0	NA	promoter-TSS (NM_001320340)	promoter-TSS (NM_001320340)	111	NM_001320341	258010		NM_148893	ENSG00000198168	SVIP	-	small VCP interacting protein	protein-coding
105490	chr17	83083271	83085150	+	0	NA	intron (NM_001363853, intron 2 of 4)	intron (NM_001363853, intron 2 of 4)	3064	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
226032	chr9	42550771	42551330	+	0	NA	Intergenic	CpG	18299	NR_126050	103908605		NR_126050		FAM88E	-	family with sequence similarity 88 member E	ncRNA
155294	chr22	38115651	38115950	+	0	NA	intron (NM_003560, intron 13 of 16)	intron (NM_003560, intron 13 of 16)	-5116	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
72654	chr15	38510571	38510730	+	0	NA	intron (NM_001128602, intron 8 of 15)	intron (NM_001128602, intron 8 of 15)	54164	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
115214	chr19	14490001	14490380	+	0	NA	intron (NM_202470, intron 1 of 6)	AluSx3|SINE|Alu	5937	NM_202470	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
135503	chr2	161992501	161993400	+	0	NA	non-coding (NR_166822, exon 27 of 27)	non-coding (NR_166822, exon 27 of 27)	81265	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
89793	chr16	89494971	89495330	+	0	NA	Intergenic	Intergenic	-4589	NM_001256183	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
228673	chr9	107307671	107308030	+	0	NA	intron (NM_001244724, intron 4 of 9)	intron (NM_001244724, intron 4 of 9)	23081	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
109932	chr19	1314351	1314650	+	0	NA	Intergenic	Intergenic	28627	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
83325	chr16	24737121	24737580	+	0	NA	intron (NM_001330520, intron 2 of 23)	intron (NM_001330520, intron 2 of 23)	7699	NM_014494	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
66523	chr14	61746171	61746680	+	0	NA	TTS (NR_045406)	TTS (NR_045406)	2664	NR_045406	100750247		NR_045406		HIF1A-AS2	3'aHIF-1A|aHIF	HIF1A antisense RNA 2	ncRNA
108222	chr18	63183971	63184330	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	135619	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
122221	chr19	48975771	48976730	+	0	NA	intron (NM_002103, intron 10 of 15)	intron (NM_002103, intron 10 of 15)	10941	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
138588	chr2	207987201	207987400	+	0	NA	intron (NM_001080475, intron 2 of 7)	intron (NM_001080475, intron 2 of 7)	38227	NM_001080475	389072		NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
144880	chr20	36920771	36921200	+	0	NA	intron (NM_001363733, intron 6 of 15)	AluJo|SINE|Alu	30723	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
123388	chr19	53918771	53919880	+	0	NA	intron (NM_001384801, intron 4 of 4)	intron (NM_001384801, intron 4 of 4)	10047	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
2287	chr1	8956651	8957150	+	0	NA	intron (NM_001215, intron 2 of 7)	intron (NM_001215, intron 2 of 7)	11032	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
157630	chr22	46088001	46088200	+	0	NA	intron (NR_110479, intron 1 of 4)	intron (NR_110479, intron 1 of 4)	2103	NR_110479	400931		NM_207477	ENSG00000197182	MIRLET7BHG	linc-Ppara	MIRLET7B host gene	ncRNA
8619	chr1	41666851	41667600	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-182542	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
67889	chr14	74427371	74427690	+	0	NA	Intergenic	Intergenic	-1320	NM_001105579	646658		NM_001105579	ENSG00000183379	SYNDIG1L	CAPUCIN|DSPC1|IFITMD4|SynDIG2|TMEM90A	synapse differentiation inducing 1 like	protein-coding
229445	chr9	121463171	121463330	+	0	NA	intron (NM_001382586, intron 5 of 7)	L2|LINE|L2	35460	NM_001382587	2681		NM_001382584	ENSG00000204136	GGTA1	GGTA|GGTA1P|GLYT2|a1/3GTP	glycoprotein alpha-galactosyltransferase 1 (inactive)	protein-coding
215017	chr7	152394101	152394500	+	0	NA	intron (NM_170606, intron 1 of 58)	L2a|LINE|L2	41703	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
83473	chr16	27374271	27375250	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-27414	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
131518	chr2	96553661	96555480	+	0	NA	Intergenic	Intergenic	16691	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
187885	chr5	148807171	148807330	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-19361	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
126939	chr2	33475561	33476890	+	0	NA	promoter-TSS (NM_001349976)	promoter-TSS (NM_001349976)	-424	NM_001349977	25780		NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
71456	chr14	105856651	105857700	+	0	NA	TTS (NR_130468)	TTS (NR_130468)	397	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA
57924	chr12	123570421	123570700	+	0	NA	Intergenic	Intergenic	13767	NR_110049	101927415		NR_110049		TMED2-DT	-	TMED2 divergent transcript	ncRNA
46948	chr11	134411201	134411800	+	0	NA	intron (NM_054025, intron 1 of 5)	CpG	418	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
163599	chr3	51982581	51984130	+	0	NA	promoter-TSS (NM_001198898)	promoter-TSS (NM_001198898)	-180	NM_001198897	95		NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
239234	chrY	12949751	12950050	+	0	NA	Intergenic	AluSq2|SINE|Alu	44195	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
147631	chr20	62149171	62149530	+	0	NA	intron (NM_198935, intron 1 of 10)	intron (NM_198935, intron 1 of 10)	5581	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
154881	chr22	37143821	37144480	+	0	NA	exon (NM_001346223, exon 2 of 10)	exon (NM_001346223, exon 2 of 10)	5766	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
101923	chr17	74462921	74464580	+	0	NA	Intergenic	Intergenic	-2623	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
47579	chr12	4539771	4539930	+	0	NA	intron (NM_006479, intron 1 of 8)	L2|LINE|L2	960	NM_001130862	10635		NM_006479	ENSG00000111247	RAD51AP1	PIR51	RAD51 associated protein 1	protein-coding
238924	chrX	154737201	154737400	+	0	NA	intron (NR_104114, intron 1 of 8)	intron (NR_104114, intron 1 of 8)	13777	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
203740	chr7	1151771	1152700	+	0	NA	TTS (NM_182491)	TTS (NM_182491)	7961	NM_001365381	90637		NM_182491	ENSG00000178381	ZFAND2A	AIRAP	zinc finger AN1-type containing 2A	protein-coding
72333	chr15	31305071	31305450	+	0	NA	Intergenic	Intergenic	-21575	NM_001302461	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
73853	chr15	50108551	50108650	+	0	NA	intron (NM_024837, intron 1 of 27)	L2c|LINE|L2	4779	NR_073598	79895		NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
116603	chr19	18270911	18272000	+	0	NA	intron (NM_001145304, intron 1 of 3)	AluSx1|SINE|Alu	2997	NM_001145304	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
238042	chrX	135373471	135373630	+	0	NA	Intergenic	Intergenic	-22879	NR_104652	100506790		NR_104652	ENSG00000290806	LOC100506790	-	uncharacterized LOC100506790	ncRNA
91913	chr17	7312651	7312750	+	0	NA	TTS (NM_001143760)	TTS (NM_001143760)	2660	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
217694	chr8	30127571	30127730	+	0	NA	intron (NM_001128208, intron 3 of 3)	AluJr|SINE|Alu	17015	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
84148	chr16	29742171	29742330	+	0	NA	TTS (NM_175900)	TTS (NM_175900)	3740	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
71305	chr14	105330371	105331000	+	0	NA	intron (NM_001100913, intron 1 of 24)	intron (NM_001100913, intron 1 of 24)	-15108	NM_001242787	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
35533	chr11	1573401	1573900	+	0	NA	intron (NR_021489, intron 1 of 1).3	intron (NR_021489, intron 1 of 1).3	909	NR_021489	338651		NR_021489	ENSG00000233930	KRTAP5-AS1	-	KRTAP5-1/KRTAP5-2 antisense RNA 1	ncRNA
176905	chr4	102803021	102803430	+	0	NA	intron (NM_003340, intron 4 of 7)	MIRb|SINE|MIR	22635	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
174844	chr4	48489901	48490680	+	0	NA	promoter-TSS (NM_175619)	promoter-TSS (NM_175619)	38	NM_175619	326340		NM_175619	ENSG00000182223	ZAR1	Z3CXXC6	zygote arrest 1	protein-coding
27238	chr10	29487021	29487930	+	0	NA	non-coding (NR_110927, exon 3 of 3)	non-coding (NR_110927, exon 3 of 3)	57622	NR_030335	693189		NR_030335	ENSG00000207612	MIR604	MIRN604|hsa-mir-604	microRNA 604	ncRNA
967	chr1	1782521	1785150	+	0	NA	Intergenic	AluY|SINE|Alu	-3804	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
8937	chr1	44035671	44036030	+	0	NA	Intergenic	Intergenic	-4388	NM_001328630	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
56331	chr12	112907971	112908130	+	0	NA	intron (NM_016816, intron 1 of 5)	MER61F|LTR|ERV1	1088	NM_001320151	4938		NM_002534	ENSG00000089127	OAS1	E18/E16|IFI-4|IMD100|OIAS|OIASI	2'-5'-oligoadenylate synthetase 1	protein-coding
98710	chr17	47948451	47950380	+	0	NA	TTS (NM_018129)	TTS (NM_018129)	7844	NM_018129	55163		NM_018129	ENSG00000108439	PNPO	HEL-S-302|PDXPO	pyridoxamine 5'-phosphate oxidase	protein-coding
44417	chr11	103959351	103959530	+	0	NA	intron (NM_025208, intron 3 of 6)	intron (NM_025208, intron 3 of 6)	-77200	NM_001001711	414301		NM_001001711	ENSG00000170967	DDI1	-	DNA damage inducible 1 homolog 1	protein-coding
215384	chr7	157461371	157461530	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	-4781	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
34489	chr10	132539401	132540130	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	1978	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
238199	chrX	137051371	137051530	+	0	NA	Intergenic	Intergenic	-17455	NM_054021	83550		NM_054021	ENSG00000165370	GPR101	GPCR6|PAGH2|PITA2	G protein-coupled receptor 101	protein-coding
4499	chr1	21662671	21663030	+	0	NA	intron (NM_002885, intron 1 of 24)	MIR|SINE|MIR	6507	NM_001350526	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
6297	chr1	27618101	27619430	+	0	NA	intron (NM_001042747, intron 5 of 12)	intron (NM_001042747, intron 5 of 12)	7475	NM_001042747	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
116953	chr19	18855951	18856250	+	0	NA	intron (NM_001297549, intron 12 of 23)	intron (NM_001297549, intron 12 of 23)	24141	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
108197	chr18	63114001	63114400	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	205569	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
88399	chr16	84637051	84637150	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-11411	NM_001303451	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
26592	chr10	22159171	22159330	+	0	NA	Intergenic	LTR79|LTR|ERVL	50733	NM_001199938	340900		NM_001199938	ENSG00000223601	EBLN1	EBLN-1	endogenous Bornavirus like nucleoprotein 1	protein-coding
139210	chr2	219281551	219282380	+	0	NA	exon (NM_006736, exon 5 of 9)	exon (NM_006736, exon 5 of 9)	2599	NM_006736	3300		NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HMNR5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
27989	chr10	43078771	43079130	+	0	NA	intron (NM_020975, intron 1 of 19)	intron (NM_020975, intron 1 of 19)	1881	NM_020975	5979		NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1	ret proto-oncogene	protein-coding
227991	chr9	95497521	95497930	+	0	NA	intron (NM_001354919, intron 2 of 4)	intron (NM_001354919, intron 2 of 4)	9474	NM_001083607	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
57677	chr12	122834501	122836100	+	0	NA	promoter-TSS (NM_003959)	promoter-TSS (NM_003959)	-157	NM_001303097	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
36366	chr11	3948471	3948630	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	92488	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
50033	chr12	43805681	43807050	+	0	NA	promoter-TSS (NM_002822)	promoter-TSS (NM_002822)	-48	NR_073473	5756		NM_002822	ENSG00000151239	TWF1	A6|PTK9	twinfilin actin binding protein 1	protein-coding
69508	chr14	95686221	95686430	+	0	NA	promoter-TSS (NM_004918)	promoter-TSS (NM_004918)	-101	NM_004918	9623		NM_004918	ENSG00000213231	TCL1B	SYN-1|TML1	TCL1 family AKT coactivator B	protein-coding
84841	chr16	31121501	31121750	+	0	NA	intron (NM_032188, intron 3 of 10)	FLAM_A|SINE|Alu	3961	NM_032188	84148		NM_032188	ENSG00000103510	KAT8	LIGOWS|MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
176655	chr4	99949801	99951630	+	0	NA	promoter-TSS (NM_002106)	promoter-TSS (NM_002106)	221	NR_125923	256880		NR_002799		H2AZ1-DT	-	H2AZ1 divergent transcript	ncRNA
160744	chr3	32495051	32495550	+	0	NA	intron (NM_017801, intron 1 of 3)	intron (NM_017801, intron 1 of 3)	7552	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
81876	chr16	11673801	11674550	+	0	NA	intron (NM_003498, intron 1 of 1)	intron (NM_003498, intron 1 of 1)	5720	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
57368	chr12	121788951	121790830	+	0	NA	intron (NM_019034, intron 2 of 4)	intron (NM_019034, intron 2 of 4)	3798	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
179148	chr4	169621811	169622750	+	0	NA	intron (NM_173872, intron 1 of 13)	intron (NM_173872, intron 1 of 13)	1702	NM_001243372	1182		NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3|NEDHYBA|NEDSBA	chloride voltage-gated channel 3	protein-coding
220692	chr8	101493401	101494130	+	0	NA	intron (NM_001330593, intron 1 of 15)	CpG	1326	NM_001330593	79977		NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|PPCD4|TFCP2L3	grainyhead like transcription factor 2	protein-coding
63412	chr13	114082171	114082750	+	0	NA	intron (NM_001320821, intron 1 of 25).2	LTR40a|LTR|ERVL	-4505	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
127141	chr2	37670601	37673050	+	0	NA	promoter-TSS (NM_006449)	promoter-TSS (NM_006449)	-183	NM_006449	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
209333	chr7	76203671	76203830	+	0	NA	intron (NM_001291831, intron 1 of 15)	MIRb|SINE|MIR	1854	NM_001110199	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
217793	chr8	33545701	33545900	+	0	NA	Intergenic	Intergenic	21328	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
175056	chr4	53591501	53591700	+	0	NA	promoter-TSS (NM_001126328)	promoter-TSS (NM_001126328)	-114	NM_001126328	84708		NM_032622	ENSG00000072201	LNX1	LNX|MPDZ|PDZRN2	ligand of numb-protein X 1	protein-coding
30548	chr10	79684971	79685400	+	0	NA	non-coding (NR_027512, exon 1 of 1)	non-coding (NR_027512, exon 1 of 1)	2210	NR_027512	650623		NR_027512		BEND3P3	-	BEN domain containing 3 pseudogene 3	pseudo
39657	chr11	61628121	61628430	+	0	NA	intron (NR_002775, intron 2 of 4)	intron (NR_002775, intron 2 of 4)	13239	NR_002775	113157		NR_002775	ENSG00000293352	RPLP0P2	RPLP0L2|RPLP0_3_1146	ribosomal protein lateral stalk subunit P0 pseudogene 2	pseudo
116704	chr19	18440101	18441000	+	0	NA	Intergenic	Intergenic	-2417	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
171173	chr3	195653551	195654180	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1706	NR_136186	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
126751	chr2	30234141	30234630	+	0	NA	intron (NM_030915, intron 1 of 2)	intron (NM_030915, intron 1 of 2)	2851	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
223218	chr8	143594301	143594930	+	0	NA	intron (NM_001130055, intron 1 of 8)	intron (NM_001130055, intron 1 of 8)	2798	NM_001130057	1936		NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
99084	chr17	48995351	48996250	+	0	NA	Intergenic	CpG	-1585	NM_006546	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
208947	chr7	74177421	74178030	+	0	NA	intron (NM_022170, intron 1 of 6)	intron (NM_022170, intron 1 of 6)	3369	NM_022170	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
138949	chr2	218252751	218253450	+	0	NA	intron (NM_152862, intron 10 of 10)	intron (NM_152862, intron 10 of 10)	-6396	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
215230	chr7	156873271	156873900	+	0	NA	intron (NR_146958, intron 1 of 14)	LTR12C|LTR|ERV1	19598	NM_001363412	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
114406	chr19	12639771	12640530	+	0	NA	Intergenic	CpG	26592	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
160643	chr3	31563501	31563700	+	0	NA	intron (NM_178862, intron 1 of 15)	L2a|LINE|L2	30675	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
96596	chr17	40532851	40535180	+	0	NA	Intergenic	L2b|LINE|L2	26379	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
4009	chr1	18927421	18929080	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	-25451	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
147709	chr20	62357071	62357700	+	0	NA	TTS (NR_109922)	TTS (NR_109922)	4375	NR_109922	101928158		NR_109922	ENSG00000228812	LAMA5-AS1	-	LAMA5 antisense RNA 1	ncRNA
49030	chr12	14371971	14373050	+	0	NA	intron (NM_001286515, intron 1 of 12)	intron (NM_001286515, intron 1 of 12)	6828	NM_001286515	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
201322	chr6	144408921	144409180	+	0	NA	intron (NM_007124, intron 2 of 73)	intron (NM_007124, intron 2 of 73)	3395	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
26261	chr10	14664471	14664630	+	0	NA	intron (NM_001282695, intron 2 of 5)	Tigger3a|DNA|TcMar-Tigger	-60149	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
54933	chr12	96208551	96209130	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	14465	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
55048	chr12	96402221	96402480	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1911	NM_001170464	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
161546	chr3	42655551	42656050	+	0	NA	intron (NM_145166, intron 1 of 5)	intron (NM_145166, intron 1 of 5)	-1412	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
134824	chr2	148546551	148546650	+	0	NA	Intergenic	Intergenic	-98151	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
149043	chr21	15034601	15034800	+	0	NA	intron (NM_003489, intron 2 of 3)	intron (NM_003489, intron 2 of 3)	30300	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
221694	chr8	126824501	126824930	+	0	NA	Intergenic	Intergenic	-188439	NR_045262	100750225		NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1|PiHL	prostate cancer associated transcript 1	ncRNA
219102	chr8	65931671	65932280	+	0	NA	Intergenic	Intergenic	-83003	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
112459	chr19	6384421	6385350	+	0	NA	intron (NM_002096, intron 5 of 12)	AluSx|SINE|Alu	4818	NR_106945	102465533		NR_106945	ENSG00000274390	MIR6885	hsa-mir-6885	microRNA 6885	ncRNA
214246	chr7	148881521	148882130	+	0	NA	intron (NM_001203248, intron 1 of 19)	AluSz|SINE|Alu	1660	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
199613	chr6	119335901	119336130	+	0	NA	intron (NM_005907, intron 2 of 12)	MER5A|DNA|hAT-Charlie	13746	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
13711	chr1	116768651	116770500	+	0	NA	TTS (NM_001767)	TTS (NM_001767)	15145	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
141078	chr2	238284601	238284800	+	0	NA	intron (NM_022817, intron 1 of 22)	intron (NM_022817, intron 1 of 22)	3910	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
197484	chr6	75601451	75603330	+	0	NA	5' UTR (NM_001304792, exon 1 of 15)	5' UTR (NM_001304792, exon 1 of 15)	510	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
225880	chr9	39544751	39544850	+	0	NA	Intergenic	MER67C|LTR|ERV1	-80274	NR_003528	401509		NM_001032297		ZNF658B	-	zinc finger protein 658B (pseudogene)	pseudo
32863	chr10	110074971	110075130	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-66669	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
30306	chr10	75293551	75293850	+	0	NA	intron (NR_120651, intron 1 of 3)	intron (NR_120651, intron 1 of 3)	-2683	NR_038224	253264		NR_038223	ENSG00000226051	ZNF503-AS1	-	ZNF503 antisense RNA 1	ncRNA
51496	chr12	52116301	52117300	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	23231	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
211991	chr7	113781551	113781900	+	0	NA	Intergenic	L1HS|LINE|L1	137284	NM_002711	5506		NM_002711	ENSG00000154415	PPP1R3A	GM|PP1G|PPP1R3	protein phosphatase 1 regulatory subunit 3A	protein-coding
223120	chr8	143470401	143470680	+	0	NA	intron (NM_015117, intron 5 of 11)	CpG	35708	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
115857	chr19	16544471	16544630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2113	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
46537	chr11	128464851	128466130	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	56820	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
76836	chr15	77437071	77437430	+	0	NA	intron (NM_001304505, intron 1 of 9)	L2a|LINE|L2	16362	NM_001304504	10363		NM_018200	ENSG00000140382	HMG20A	HMGX1|HMGXB1	high mobility group 20A	protein-coding
123626	chr19	54574371	54574530	+	0	NA	exon (NM_001290271, exon 4 of 9).2	exon (NM_001290271, exon 4 of 9).2	619	NM_001290270	11027		NM_006866	ENSG00000239998	LILRA2	CD85H|ILT1|LIR-7|LIR7	leukocyte immunoglobulin like receptor A2	protein-coding
96981	chr17	42266501	42267420	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	9431	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
182937	chr5	70903371	70903530	+	0	NA	intron (NM_022978, intron 2 of 2).3	AluSx3|SINE|Alu	2781	NM_022978	728492		NM_022978	ENSG00000205572	SERF1B	FAM2B|H4F5C|h4F5	small EDRK-rich factor 1B	protein-coding
23458	chr1	228500521	228501750	+	0	NA	Intergenic	MER77B|LTR|ERVL	11153	NM_001287262	100129094		NM_001287262		BTNL10P	BTN4|BTNL10|BUTR1	butyrophilin like 10, pseudogene	pseudo
166519	chr3	114345821	114346080	+	0	NA	intron (NR_121662, intron 6 of 6)	intron (NR_121662, intron 6 of 6)	-5861	NR_038993	100131117		NR_038993	ENSG00000241560	ZBTB20-AS1	-	ZBTB20 antisense RNA 1	ncRNA
26796	chr10	23343771	23344650	+	0	NA	intron (NR_155752, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	253	NR_155752	105376453		NR_155752	ENSG00000224215	C10orf67-AS1	-	C10orf67 antisense RNA 1	ncRNA
136986	chr2	190526171	190526530	+	0	NA	intron (NR_136298, intron 1 of 8)	LTR33|LTR|ERVL	8372	NM_001142645	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
163577	chr3	51953721	51954600	+	0	NA	Intergenic	L2a|LINE|L2	-1221	NM_080865	118442		NM_080865	ENSG00000180929	GPR62	GPCR8|KPG_005	G protein-coupled receptor 62	protein-coding
200324	chr6	133889721	133890180	+	0	NA	promoter-TSS (NR_109982)	promoter-TSS (NR_109982)	837	NM_198392	6943		NM_003206	ENSG00000118526	TCF21	POD1|bHLHa23	transcription factor 21	protein-coding
155972	chr22	39900621	39901950	+	0	NA	5' UTR (NM_004810, exon 1 of 8)	5' UTR (NM_004810, exon 1 of 8)	201	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
178929	chr4	158850571	158851030	+	0	NA	intron (NM_001366843, intron 8 of 17)	intron (NM_001366843, intron 8 of 17)	44961	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
193024	chr6	28383401	28383800	+	0	NA	promoter-TSS (NR_133668)	promoter-TSS (NR_133668)	-161	NR_133669	9753		NM_014724	ENSG00000158691	ZSCAN12	ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2	zinc finger and SCAN domain containing 12	protein-coding
82946	chr16	21864721	21864980	+	0	NA	non-coding (NR_024456, exon 1 of 1).3	non-coding (NR_024456, exon 1 of 1).3	1885	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
100043	chr17	58060721	58060980	+	0	NA	Intergenic	Intergenic	22354	NR_110809	101927666		NR_110809	ENSG00000266290	DYNLL2-DT	-	DYNLL2 divergent transcript	ncRNA
52694	chr12	56499271	56499430	+	0	NA	Intergenic	Intergenic	-10936	NM_001280798	27165		NM_013267	ENSG00000135423	GLS2	GA|GLS|LGA|hLGA	glutaminase 2	protein-coding
265	chr1	924751	926400	+	0	NA	promoter-TSS (NM_152486)	promoter-TSS (NM_152486)	29	NR_168405	107985728		NR_168405		LOC107985728	-	collagen alpha-1(III) chain-like	ncRNA
31042	chr10	88896871	88897680	+	0	NA	intron (NM_020799, intron 1 of 10)	intron (NM_020799, intron 1 of 10)	17030	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
179239	chr4	174224751	174224950	+	0	NA	Intergenic	(CTCCC)n|Simple_repeat|Simple_repeat	-4452	NR_125896	101928509		NR_125896	ENSG00000248174	LINC02268	-	long intergenic non-protein coding RNA 2268	ncRNA
6184	chr1	27441871	27442230	+	0	NA	intron (NM_006990, intron 1 of 8)	FRAM|SINE|Alu	48117	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
199714	chr6	125311071	125311530	+	0	NA	Intergenic	Intergenic	-9333	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
111141	chr19	3280771	3281400	+	0	NA	intron (NM_021938, intron 5 of 12)	intron (NM_021938, intron 5 of 12)	55807	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
102870	chr17	76509171	76509330	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7823	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
196667	chr6	44386901	44388500	+	0	NA	promoter-TSS (NM_001253)	promoter-TSS (NM_001253)	-6	NM_001253	988		NM_001253	ENSG00000096401	CDC5L	CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1	cell division cycle 5 like	protein-coding
20201	chr1	193119671	193119830	+	0	NA	Intergenic	MER110-int|LTR|ERV1	-2281	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
226266	chr9	68240701	68240900	+	0	NA	Intergenic	L1ME3F|LINE|L1	-1089	NM_001286836	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
139128	chr2	218992551	218992650	+	0	NA	intron (NM_057094, intron 2 of 4)	intron (NM_057094, intron 2 of 4)	822	NM_057093	1412		NM_057093	ENSG00000163499	CRYBA2	CTRCT42	crystallin beta A2	protein-coding
102345	chr17	75502321	75502800	+	0	NA	exon (NM_020753, exon 18 of 20)	exon (NM_020753, exon 18 of 20)	4012	NR_106843	102466911		NR_106843	ENSG00000284595	MIR6785	hsa-mir-6785	microRNA 6785	ncRNA
221793	chr8	127964971	127965530	+	0	NA	intron (NR_003367, intron 3 of 8)	L1MC4|LINE|L1	4617	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
67414	chr14	70027871	70028100	+	0	NA	intron (NM_022137, intron 11 of 11)	intron (NM_022137, intron 11 of 11)	49852	NR_145786	109623479		NR_145786		SNORD169	-	small nucleolar RNA, C/D box 169	snoRNA
14259	chr1	143261951	143263080	+	0	NA	Intergenic	Intergenic	160077	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
31554	chr10	97185721	97185980	+	0	NA	5' UTR (NM_003061, exon 1 of 37)	5' UTR (NM_003061, exon 1 of 37)	109	NM_003061	6585		NM_003061	ENSG00000187122	SLIT1	MEGF4|SLIL1|SLIT-1|SLIT3	slit guidance ligand 1	protein-coding
77166	chr15	80057971	80058130	+	0	NA	Intergenic	L2a|LINE|L2	-1518	NM_001242918	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
104525	chr17	81243801	81244000	+	0	NA	TTS (NM_001037984)	TTS (NM_001037984)	3986	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
78082	chr15	90227801	90228380	+	0	NA	exon (NM_001324030, exon 14 of 14)	exon (NM_001324030, exon 14 of 14)	5851	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
94383	chr17	28945371	28945730	+	0	NA	TTS (NR_110803)	TTS (NR_110803)	5968	NM_020889	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
69346	chr14	93961351	93961980	+	0	NA	intron (NM_001202429, intron 2 of 9)	intron (NM_001202429, intron 2 of 9)	-4618	NM_016150	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
28510	chr10	50334051	50334580	+	0	NA	intron (NM_147156, intron 7 of 10)	(AT)n|Simple_repeat|Simple_repeat	-82799	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
235470	chrX	46610171	46610700	+	0	NA	intron (NM_001257291, intron 16 of 16)	intron (NM_001257291, intron 16 of 16)	36670	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
176360	chr4	88489071	88489650	+	0	NA	intron (NM_016323, intron 16 of 22)	intron (NM_016323, intron 16 of 22)	32241	NM_016323	51191		NM_016323	ENSG00000138646	HERC5	CEB1|CEBP1	HECT and RLD domain containing E3 ubiquitin protein ligase 5	protein-coding
64753	chr14	34558651	34559150	+	0	NA	Intergenic	Intergenic	-2511	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
97269	chr17	43018171	43019750	+	0	NA	intron (NM_006373, intron 1 of 5)	intron (NM_006373, intron 1 of 5)	3425	NM_006373	10493		NM_006373	ENSG00000108828	VAT1	VATI	vesicle amine transport 1	protein-coding
96792	chr17	41814801	41815000	+	0	NA	intron (NM_021939, intron 1 of 9)	AluSx3|SINE|Alu	1896	NM_021939	60681		NM_021939	ENSG00000141756	FKBP10	BRKS|BRKS1|FKBP65|OI11|OI6|PPIASE|TLH1|hFKBP65	FKBP prolyl isomerase 10	protein-coding
183504	chr5	79510551	79511280	+	0	NA	intron (NM_001277077, intron 1 of 5)	intron (NM_001277077, intron 1 of 5)	2921	NM_001277077	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
161742	chr3	44509501	44509780	+	0	NA	intron (NM_001287349, intron 1 of 4)	MER70C|LTR|ERVL	977	NM_001287349	285346		NM_001287349	ENSG00000178917	ZNF852	-	zinc finger protein 852	protein-coding
39410	chr11	60845271	60845430	+	0	NA	intron (NM_024098, intron 1 of 3)	L2a|LINE|L2	3237	NM_024098	79080		NM_024098	ENSG00000110104	CCDC86	Cgr1	coiled-coil domain containing 86	protein-coding
230223	chr9	127864901	127866630	+	0	NA	TTS (NM_000476)	TTS (NM_000476)	3730	NR_039819	100616429		NR_039819	ENSG00000263979	MIR4672	-	microRNA 4672	ncRNA
18246	chr1	161053021	161053480	+	0	NA	intron (NM_001025598, intron 6 of 11)	intron (NM_001025598, intron 6 of 11)	-7273	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
205256	chr7	8128651	8129650	+	0	NA	intron (NR_146926, intron 12 of 13)	intron (NR_146926, intron 12 of 13)	133017	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
153704	chr22	29273901	29274300	+	0	NA	intron (NM_001163286, intron 4 of 15)	intron (NM_001163286, intron 4 of 15)	5832	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
226298	chr9	68546521	68546930	+	0	NA	promoter-TSS (NR_109769)	promoter-TSS (NR_109769)	-123	NR_109769	101927015		NR_109769		LINC01506	-	long intergenic non-protein coding RNA 1506	ncRNA
178194	chr4	142403751	142403850	+	0	NA	promoter-TSS (NM_001385461)	promoter-TSS (NM_001385461)	-667	NR_169624	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
30937	chr10	87321651	87321750	+	0	NA	intron (NR_024397, intron 3 of 5)	L1MC2|LINE|L1	-20711	NR_029408	439994		NR_029408	ENSG00000224914	LINC00863	-	long intergenic non-protein coding RNA 863	ncRNA
230347	chr9	128024521	128025180	+	0	NA	Intergenic	AluSx1|SINE|Alu	42470	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
210271	chr7	99412471	99413130	+	0	NA	intron (NM_001370410, intron 3 of 5)	AluY|SINE|Alu	3628	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
79220	chr16	364801	365700	+	0	NA	Intergenic	AluSq2|SINE|Alu	5288	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
107721	chr18	49815001	49815500	+	0	NA	TTS (NR_003003)	TTS (NR_003003)	1227	NR_117096	103091864		NR_117096	ENSG00000267322	SNHG22	SCARNA17|SCARNA17HG	small nucleolar RNA host gene 22	ncRNA
100349	chr17	59908221	59909180	+	0	NA	intron (NM_001272044, intron 2 of 15)	AluY|SINE|Alu	15579	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
234849	chrX	24646251	24646350	+	0	NA	intron (NM_001163264, intron 1 of 7)	intron (NM_001163264, intron 1 of 7)	1047	NM_004845	9468		NM_004845	ENSG00000102230	PCYT1B	CCTB|CTB	phosphate cytidylyltransferase 1B, choline	protein-coding
162008	chr3	46409821	46410080	+	0	NA	TTS (NM_003965)	TTS (NM_003965)	2335	NM_001130910	9034		NM_003965	ENSG00000121797	CCRL2	ACKR5|CKRX|CRAM|CRAM-A|CRAM-B|HCR	C-C motif chemokine receptor like 2	protein-coding
104847	chr17	81841151	81841850	+	0	NA	Intergenic	CpG	-6450	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
4383	chr1	20759971	20760530	+	0	NA	intron (NR_164851, intron 7 of 11)	L2a|LINE|L2	26402	NM_001376789	50809		NM_016287	ENSG00000127483	HP1BP3	HP1-BP74|HP1BP74	heterochromatin protein 1 binding protein 3	protein-coding
4235	chr1	19485001	19486730	+	0	NA	promoter-TSS (NM_004930)	promoter-TSS (NM_004930)	-326	NM_001206540	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
33664	chr10	119861301	119861950	+	0	NA	intron (NM_001256379, intron 1 of 15)	intron (NM_001256379, intron 1 of 15)	11218	NM_001256378	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
34814	chr11	285301	285700	+	0	NA	TTS (NM_001276700)	TTS (NM_001276700)	-3626	NM_025092	80162		NM_025092	ENSG00000142102	PGGHG	ATHL1	protein-glucosylgalactosylhydroxylysine glucosidase	protein-coding
218745	chr8	58858251	58858730	+	0	NA	intron (NM_014729, intron 3 of 8)	intron (NM_014729, intron 3 of 8)	-198637	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
92600	chr17	9565771	9566530	+	0	NA	intron (NM_004853, intron 2 of 7)	L1PA13|LINE|L1	9670	NM_004853	9482		NM_004853	ENSG00000170310	STX8	CARB	syntaxin 8	protein-coding
193942	chr6	31659321	31661430	+	0	NA	TTS (NM_033177)	TTS (NM_033177)	403	NM_021184	57827		NM_021184	ENSG00000204439	C6orf47	D6S53E|G4|NG34	chromosome 6 open reading frame 47	protein-coding
27055	chr10	27141351	27142080	+	0	NA	intron (NM_001253866, intron 3 of 17)	intron (NM_001253866, intron 3 of 17)	12669	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
2194	chr1	8602351	8603130	+	0	NA	intron (NM_012102, intron 5 of 23)	intron (NM_012102, intron 5 of 23)	-107827	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
40218	chr11	63536581	63538300	+	0	NA	intron (NM_004585, intron 1 of 3)	intron (NM_004585, intron 1 of 3)	632	NM_004585	5920		NM_004585	ENSG00000133321	PLAAT4	HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3	phospholipase A and acyltransferase 4	protein-coding
129205	chr2	68208251	68208550	+	0	NA	intron (NM_000945, intron 2 of 5)	MER58A|DNA|hAT-Charlie	44132	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
110455	chr19	1999071	1999330	+	0	NA	intron (NM_017797, intron 1 of 8)	CpG	16514	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
141934	chr20	1225431	1226850	+	0	NA	promoter-TSS (NM_001384355)	promoter-TSS (NM_001384355)	96	NM_001384356	642636		NM_001136566	ENSG00000244588	RAD21L1	RAD21L|dJ545L17.2	RAD21 cohesin complex component like 1	protein-coding
122433	chr19	49471971	49473150	+	0	NA	Intergenic	AluSz|SINE|Alu	-1655	NM_001204502	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
183165	chr5	75237971	75238500	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1357	NM_001164443	256006		NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
153603	chr22	27832071	27832300	+	0	NA	Intergenic	Intergenic	-30429	NM_002430	4330		NM_002430	ENSG00000169184	MN1	CEBALID|MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	MN1 proto-oncogene, transcriptional regulator	protein-coding
93745	chr17	19872421	19872880	+	0	NA	Intergenic	AluY|SINE|Alu	-4714	NM_001142610	9706		NM_014683	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
75605	chr15	67112001	67112200	+	0	NA	intron (NM_005902, intron 1 of 8)	L1MB7|LINE|L1	-13616	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
34037	chr10	124728201	124729880	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	15338	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
186041	chr5	134040451	134040830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-35665	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
47320	chr12	1740171	1741200	+	0	NA	intron (NM_001375364, intron 2 of 8).2	intron (NM_001375364, intron 2 of 8).2	49615	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
68031	chr14	75174151	75174700	+	0	NA	intron (NM_006827, intron 1 of 4)	intron (NM_006827, intron 1 of 4)	2187	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
149349	chr21	29082351	29082650	+	0	NA	intron (NM_001371374, intron 2 of 11)	MLT1H|LTR|ERVL-MaLR	5386	NM_001286623	56911		NM_020152	ENSG00000156265	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
89438	chr16	88957621	88958480	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	-16700	NM_175931	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
56639	chr12	118372321	118373580	+	0	NA	promoter-TSS (NM_016281)	promoter-TSS (NM_016281)	-43	NM_001346491	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
238177	chrX	136874171	136875000	+	0	NA	intron (NM_002139, intron 8 of 8)	intron (NM_002139, intron 8 of 8)	4686	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
108179	chr18	63022421	63022730	+	0	NA	Intergenic	Intergenic	297194	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
219474	chr8	73469801	73470030	+	0	NA	intron (NM_001164380, intron 13 of 14)	intron (NM_001164380, intron 13 of 14)	49841	NR_038406	100128126		NR_038406	ENSG00000253302	STAU2-AS1	-	STAU2 antisense RNA 1	ncRNA
30455	chr10	79103051	79103150	+	0	NA	intron (NM_020338, intron 1 of 24)	L2a|LINE|L2	34134	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
88691	chr16	85798471	85799900	+	0	NA	promoter-TSS (NM_001318794)	promoter-TSS (NM_001318794)	359	NM_006067	10328		NM_006067	ENSG00000131148	EMC8	C16orf2|C16orf4|COX4NB|FAM158B|NOC4	ER membrane protein complex subunit 8	protein-coding
9430	chr1	48470221	48470850	+	0	NA	intron (NM_001286238, intron 1 of 12)	intron (NM_001286238, intron 1 of 12)	1669	NM_001286238	54558		NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
153953	chr22	30351201	30351730	+	0	NA	intron (NM_005877, intron 2 of 15)	intron (NM_005877, intron 2 of 15)	-5159	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
170403	chr3	185354121	185354470	+	0	NA	intron (NM_001242317, intron 2 of 12)	intron (NM_001242317, intron 2 of 12)	-8841	NM_004721	9175		NM_004721	ENSG00000073803	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
44650	chr11	110314551	110314650	+	0	NA	Intergenic	AluJb|SINE|Alu	-17888	NM_001260493	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
53922	chr12	71683971	71684580	+	0	NA	Intergenic	MER51A|LTR|ERV1	-1807	NM_018279	55266		NM_018279	ENSG00000139291	TMEM19	-	transmembrane protein 19	protein-coding
163320	chr3	50366821	50367280	+	0	NA	exon (NM_001005505, exon 28 of 38)	exon (NM_001005505, exon 28 of 38)	1687	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
53893	chr12	70719751	70720130	+	0	NA	intron (NM_130846, intron 2 of 9)	intron (NM_130846, intron 2 of 9)	34668	NR_073474	5801		NM_002849	ENSG00000153233	PTPRR	EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ	protein tyrosine phosphatase receptor type R	protein-coding
157937	chr22	49790471	49790700	+	0	NA	intron (NR_146335, intron 8 of 13)	intron (NR_146335, intron 8 of 13)	33746	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
225752	chr9	37130101	37130300	+	0	NA	intron (NM_001289119, intron 2 of 8)	AluSx1|SINE|Alu	9602	NM_001289120	84186		NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
57171	chr12	121412221	121412750	+	0	NA	intron (NM_194271, intron 2 of 6)	AluY|SINE|Alu	12367	NM_194271	80196		NM_025126	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	ring finger protein 34	protein-coding
229835	chr9	125820251	125820880	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	72382	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
63910	chr14	21923451	21924200	+	0	NA	Intergenic	Intergenic	-252808	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
115678	chr19	16183851	16184150	+	0	NA	Intergenic	AluJr|SINE|Alu	-1410	NM_014077	26017		NM_014077	ENSG00000105058	FAM32A	OTAG-12|OTAG12	family with sequence similarity 32 member A	protein-coding
213308	chr7	135161851	135162350	+	0	NA	intron (NM_018295, intron 1 of 1)	intron (NM_018295, intron 1 of 1)	7374	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
4853	chr1	23696301	23697300	+	0	NA	TTS (NM_001199802)	TTS (NM_001199802)	4994	NM_000975	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
16350	chr1	154323351	154323650	+	0	NA	intron (NM_080429, intron 4 of 5)	intron (NM_080429, intron 4 of 5)	-2025	NM_001005855	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
208968	chr7	74194771	74195700	+	0	NA	exon (NM_031992, exon 6 of 6)	exon (NM_031992, exon 6 of 6)	4037	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
20886	chr1	202144001	202146330	+	0	NA	promoter-TSS (NM_138795)	promoter-TSS (NM_138795)	-422	NM_001256129	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
87733	chr16	75138371	75138850	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-9914	NM_001318472	162239		NM_153688	ENSG00000184517	ZFP1	ZNF475	ZFP1 zinc finger protein	protein-coding
57878	chr12	123414521	123414780	+	0	NA	TTS (NR_130703)	TTS (NR_130703)	22083	NR_130703	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
143066	chr20	21515021	21515280	+	0	NA	Intergenic	Intergenic	-1086	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
43100	chr11	74932301	74932500	+	0	NA	intron (NM_001378164, intron 4 of 14)	L2b|LINE|L2	16691	NM_001378157	143570		NM_182969	ENSG00000166435	XRRA1	-	X-ray radiation resistance associated 1	protein-coding
84212	chr16	29897871	29898530	+	0	NA	intron (NM_001114099, intron 1 of 16)	(CTCCCCT)n|Simple_repeat|Simple_repeat	1064	NM_001243333	26470		NM_012410	ENSG00000174938	SEZ6L2	BSRPA|PSK-1	seizure related 6 homolog like 2	protein-coding
70624	chr14	102811421	102812380	+	0	NA	intron (NM_001199427, intron 1 of 7)	AluJr4|SINE|Alu	34421	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
119426	chr19	40346151	40346450	+	0	NA	intron (NR_156465, intron 1 of 8)	AluSx1|SINE|Alu	2097	NM_001256441	126526		NM_178830	ENSG00000160392	C19orf47	-	chromosome 19 open reading frame 47	protein-coding
43468	chr11	78140951	78141050	+	0	NA	intron (NR_102281, intron 1 of 2)	L2b|LINE|L2	1207	NR_102280	100289388		NM_203432	ENSG00000246174	KCTD21-AS1	-	KCTD21 antisense RNA 1	ncRNA
179167	chr4	169951851	169951960	+	0	NA	intron (NR_037878, intron 1 of 4)	AluY|SINE|Alu	23997	NR_037878	100506085		NR_037878	ENSG00000248319	LINC02275	-	long intergenic non-protein coding RNA 2275	ncRNA
92479	chr17	8785821	8786180	+	0	NA	Intergenic	Intergenic	13365	NM_152599	162387		NM_152599	ENSG00000185156	MFSD6L	-	major facilitator superfamily domain containing 6 like	protein-coding
212020	chr7	114922111	114923680	+	0	NA	intron (NM_199072, intron 1 of 4)	intron (NM_199072, intron 1 of 4)	741	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
102521	chr17	75813301	75813500	+	0	NA	intron (NM_001080419, intron 5 of 15)	intron (NM_001080419, intron 5 of 15)	28561	NR_038131	85451		NM_001080419	ENSG00000132478	UNK	UNKEMPT|ZC3H5|ZC3HDC5	unk zinc finger	protein-coding
128522	chr2	60735501	60736080	+	0	NA	Intergenic	(GACGGC)n|Simple_repeat|Simple_repeat	-20478	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
133322	chr2	113894271	113894700	+	0	NA	intron (NM_001277140, intron 1 of 11)	intron (NM_001277140, intron 1 of 11)	-3493	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
230841	chr9	129095301	129095500	+	0	NA	exon (NM_001346546, exon 15 of 15)	exon (NM_001346546, exon 15 of 15)	14289	NR_072983	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
80835	chr16	3489401	3489850	+	0	NA	Intergenic	Intergenic	-4156	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
39858	chr11	62398051	62398550	+	0	NA	Intergenic	Intergenic	-20733	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
36876	chr11	10540621	10541780	+	0	NA	promoter-TSS (NR_046374)	promoter-TSS (NR_046374)	-13	NM_016422	50862		NM_016422	ENSG00000110315	RNF141	RFP141|ZFP26|ZNF230	ring finger protein 141	protein-coding
195111	chr6	35624071	35625150	+	0	NA	intron (NM_001145775, intron 4 of 11)	MER90a|LTR|ERV1	40179	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
81366	chr16	4846521	4848580	+	0	NA	promoter-TSS (NM_001079514)	promoter-TSS (NM_001079514)	69	NM_001079514	29855		NM_016936	ENSG00000118900	UBN1	VT|VT4	ubinuclein 1	protein-coding
51285	chr12	51217271	51218950	+	0	NA	promoter-TSS (NM_001351088)	promoter-TSS (NM_001351088)	-48	NM_001330422	5463		NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
39151	chr11	56690251	56690350	+	0	NA	Intergenic	Intergenic	-8795	NM_001005213	390174		NM_001005213	ENSG00000174914	OR9G1	OR9G5	olfactory receptor family 9 subfamily G member 1	protein-coding
176113	chr4	83071571	83071730	+	0	NA	intron (NM_016129, intron 9 of 9)	AluJr4|SINE|Alu	36467	NM_016129	51138		NM_016129	ENSG00000138663	COPS4	CSN4|SGN4	COP9 signalosome subunit 4	protein-coding
90882	chr17	2384421	2385250	+	0	NA	3' UTR (NM_020310, exon 6 of 6)	3' UTR (NM_020310, exon 6 of 6)	16225	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
58593	chr12	132465501	132465900	+	0	NA	Intergenic	Intergenic	-24451	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
214279	chr7	149025871	149026030	+	0	NA	promoter-TSS (NR_163909)	promoter-TSS (NR_163909)	-641	NR_163909	9601		NM_004911	ENSG00000155660	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A member 4	protein-coding
8986	chr1	44649201	44649400	+	0	NA	intron (NM_001319957, intron 11 of 13)	intron (NM_001319957, intron 11 of 13)	17332	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
104341	chr17	80971301	80971500	+	0	NA	promoter-TSS (NR_148968)	promoter-TSS (NR_148968)	-187	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
168481	chr3	143177921	143178260	+	0	NA	Intergenic	Intergenic	58319	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
64086	chr14	22587301	22587500	+	0	NA	intron (NM_001344, intron 1 of 2)	intron (NM_001344, intron 1 of 2)	1824	NM_001344	1603		NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
226784	chr9	76650971	76651600	+	0	NA	intron (NM_001308051, intron 3 of 8)	intron (NM_001308051, intron 3 of 8)	41130	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
141162	chr2	239261651	239262030	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-43622	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
45345	chr11	118232251	118232350	+	0	NA	intron (NM_001286152, intron 5 of 5)	L2a|LINE|L2	-7289	NM_001286570	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
208640	chr7	73000971	73001480	+	0	NA	intron (NR_040582, intron 3 of 8)	AluSc|SINE|Alu	4718	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
47090	chr12	633501	633930	+	0	NA	intron (NR_122124, intron 3 of 4)	AluSz6|SINE|Alu	2824	NR_122124	100049716		NR_122124	ENSG00000177406	NINJ2-AS1	-	NINJ2 antisense RNA 1	ncRNA
99043	chr17	48890951	48891250	+	0	NA	intron (NR_135674, intron 2 of 3)	AluY|SINE|Alu	-1687	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
108146	chr18	62549421	62549680	+	0	NA	intron (NM_017742, intron 4 of 13)	intron (NM_017742, intron 4 of 13)	26525	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
150253	chr21	41428971	41429130	+	0	NA	intron (NM_001178046, intron 2 of 14)	intron (NM_001178046, intron 2 of 14)	2811	NM_002462	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
2236	chr1	8866021	8866730	+	0	NA	TTS (NR_106786)	TTS (NR_106786)	215	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
149376	chr21	30831271	30831530	+	0	NA	Intergenic	Intergenic	-1641	NM_181606	337878		NM_181606	ENSG00000274749	KRTAP7-1	KAP7.1	keratin associated protein 7-1	protein-coding
198590	chr6	107675021	107675700	+	0	NA	Intergenic	Intergenic	56790	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
74077	chr15	52668201	52668400	+	0	NA	intron (NR_169533, intron 3 of 3)	L1MA6|LINE|L1	10457	NR_169545	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
223773	chr8	144535621	144536300	+	0	NA	intron (NM_001308207, intron 7 of 11)	intron (NM_001308207, intron 7 of 11)	-6849	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
161411	chr3	41242701	41242900	+	0	NA	Intergenic	Intergenic	43295	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
64273	chr14	23324301	23324780	+	0	NA	3' UTR (NM_001360551, exon 6 of 6)	3' UTR (NM_001360551, exon 6 of 6)	2534	NM_001360552	8106		NM_004643	ENSG00000100836	PABPN1	OPMD|PAB2|PABII|PABP-2|PABP2	poly(A) binding protein nuclear 1	protein-coding
42293	chr11	68383801	68384450	+	0	NA	intron (NM_002335, intron 5 of 22)	intron (NM_002335, intron 5 of 22)	71534	NM_002335	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
224486	chr9	16824701	16824900	+	0	NA	intron (NM_017637, intron 1 of 6)	intron (NM_017637, intron 1 of 6)	45870	NM_001317940	54796		NM_017637	ENSG00000173068	BNC2	BSN2|LUTO|bn2	basonuclin zinc finger protein 2	protein-coding
84724	chr16	30913351	30913750	+	0	NA	Intergenic	Intergenic	-9301	NM_001382780	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
47065	chr12	560721	561200	+	0	NA	intron (NM_173593, intron 19 of 19)	MIRb|SINE|MIR	25526	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
15746	chr1	151132901	151134000	+	0	NA	exon (NM_030913, exon 19 of 19)	exon (NM_030913, exon 19 of 19)	13181	NM_030913	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
14779	chr1	146051531	146052930	+	0	NA	promoter-TSS (NR_104085)	promoter-TSS (NR_104085)	14	NR_104085	101954276		NR_104085	ENSG00000201558	RNVU1-6	RNU1-99|vU1.6	RNA, variant U1 small nuclear 6	snRNA
3119	chr1	12345121	12346020	+	0	NA	intron (NM_018156, intron 42 of 68)	intron (NM_018156, intron 42 of 68)	115540	NM_018156	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
60986	chr13	46726371	46726730	+	0	NA	intron (NM_015116, intron 16 of 18)	L1MDa|LINE|L1	70611	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
131740	chr2	98448021	98449180	+	0	NA	intron (NM_001351429, intron 1 of 23)	L1MC4|LINE|L1	2590	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
161597	chr3	43105121	43106280	+	0	NA	intron (NM_032806, intron 1 of 1)	CpG	379	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
233923	chrX	1764251	1764350	+	0	NA	Intergenic	Intergenic	149167	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
206762	chr7	36701801	36702000	+	0	NA	intron (NM_001177506, intron 1 of 21)	L1M4a1|LINE|L1	22594	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
162464	chr3	48503151	48503250	+	0	NA	intron (NM_001272068, intron 1 of 6)	intron (NM_001272068, intron 1 of 6)	850	NM_001272068	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
144556	chr20	35735851	35736980	+	0	NA	intron (NR_136587, intron 4 of 4)	intron (NR_136587, intron 4 of 4)	5845	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
136578	chr2	177946801	177947000	+	0	NA	intron (NM_016953, intron 2 of 19)	SVA_F|Retroposon|SVA	-24063	NM_001077358	50940		NM_016953	ENSG00000128655	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
213971	chr7	142795101	142795830	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	24495	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
24695	chr1	247301171	247301330	+	0	NA	exon (NM_032752, exon 10 of 10)	exon (NM_032752, exon 10 of 10)	30617	NM_032752	84838		NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
203518	chr7	713321	713800	+	0	NA	promoter-TSS (NM_001164762)	promoter-TSS (NM_001164762)	-353	NM_001164761	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
234876	chrX	29334401	29334600	+	0	NA	intron (NM_014271, intron 3 of 10)	SVA_D|Retroposon|SVA	-239778	NR_049877	100847047		NR_049877	ENSG00000264090	MIR4666B	-	microRNA 4666b	ncRNA
226683	chr9	75091821	75092380	+	0	NA	intron (NM_012383, intron 1 of 9)	intron (NM_012383, intron 1 of 9)	3586	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
174434	chr4	39635221	39635680	+	0	NA	intron (NM_001317896, intron 1 of 5)	L2a|LINE|L2	3415	NM_001317896	201895		NM_174921	ENSG00000163683	SMIM14	C4orf34	small integral membrane protein 14	protein-coding
143098	chr20	23348951	23349050	+	0	NA	Intergenic	Intergenic	-1791	NM_013248	29107		NM_013248	ENSG00000132661	NXT1	MTR2|P15	nuclear transport factor 2 like export factor 1	protein-coding
100376	chr17	60121471	60122030	+	0	NA	Intergenic	Intergenic	-18831	NR_027408	653653		NR_027408	ENSG00000293358	LOC653653	-	adaptor related protein complex 1 subunit sigma 2 pseudogene	pseudo
12005	chr1	95117341	95118130	+	0	NA	promoter-TSS (NM_001199691)	promoter-TSS (NM_001199691)	-188	NM_001199691	100527978		NM_001199691	ENSG00000271092	TLCD4-RWDD3	TMEM56-RWDD3	TLCD4-RWDD3 readthrough	protein-coding
66202	chr14	61280001	61281390	+	0	NA	exon (NM_001017970, exon 1 of 1)	exon (NM_001017970, exon 1 of 1)	643	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
208996	chr7	74255901	74256300	+	0	NA	Intergenic	Intergenic	-1642	NM_002914	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
125031	chr2	9593751	9594080	+	0	NA	intron (NM_006826, intron 2 of 5)	(AT)n|Simple_repeat|Simple_repeat	37082	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
176736	chr4	101345221	101346600	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	1616	NM_001130691	5530		NM_000944	ENSG00000138814	PPP3CA	ACCIID|CALN|CALNA|CALNA1|CCN1|CNA1|DEE91|IECEE|IECEE1|PPP2B	protein phosphatase 3 catalytic subunit alpha	protein-coding
70977	chr14	104706701	104707130	+	0	NA	exon (NM_001031714, exon 7 of 22)	exon (NM_001031714, exon 7 of 22)	17297	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
29298	chr10	69317121	69317380	+	0	NA	promoter-TSS (NM_001322366)	promoter-TSS (NM_001322366)	-931	NM_001322366	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
196305	chr6	43053301	43054850	+	0	NA	promoter-TSS (NM_014780)	promoter-TSS (NM_014780)	-224	NM_001374874	9820		NM_014780	ENSG00000044090	CUL7	3M1|CUL-7|KIAA0076|dJ20C7.5	cullin 7	protein-coding
115351	chr19	15215571	15215730	+	0	NA	Intergenic	L2b|LINE|L2	-14655	NM_000435	4854		NM_000435	ENSG00000074181	NOTCH3	CADASIL|CADASIL1|CASIL|IMF2|LMNS	notch receptor 3	protein-coding
223674	chr8	144397971	144398800	+	0	NA	exon (NM_013291, exon 19 of 38)	exon (NM_013291, exon 19 of 38)	1780	NR_031600	100302196		NR_031600	ENSG00000284139	MIR1234	MIRN1234|hsa-mir-1234	microRNA 1234	ncRNA
125304	chr2	10655301	10655700	+	0	NA	intron (NM_001261394, intron 10 of 19)	intron (NM_001261394, intron 10 of 19)	34475	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
184458	chr5	100551151	100551450	+	0	NA	intron (NM_198507, intron 1 of 2)	LTR16B1|LTR|ERVL	15926	NM_198507	345757		NM_198507	ENSG00000174132	FAM174A	HGS_RE408|NS5ATP6|TMEM157|UNQ1912	family with sequence similarity 174 member A	protein-coding
23810	chr1	234397251	234398100	+	0	NA	intron (NM_005646, intron 26 of 29)	G-rich|Low_complexity|Low_complexity	23974	NM_001301733	388753		NM_001012985	ENSG00000168275	COA6	C1orf31|CEMCOX4|MC4DN13	cytochrome c oxidase assembly factor 6	protein-coding
5223	chr1	24989601	24990400	+	0	NA	Intergenic	L2a|LINE|L2	-24990	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
11033	chr1	84968571	84968930	+	0	NA	intron (NM_153259, intron 1 of 13)	MER21A|LTR|ERVL	28363	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
229769	chr9	125197821	125198080	+	0	NA	Intergenic	Intergenic	2446	NR_135145	105376271		NR_135145		LOC105376271	-	uncharacterized LOC105376271	ncRNA
24660	chr1	247076321	247076930	+	0	NA	intron (NM_001204220, intron 1 of 3)	MER92B|LTR|ERV1	2186	NM_033213	93474		NM_033213	ENSG00000277462	ZNF670	-	zinc finger protein 670	protein-coding
190242	chr5	178562551	178562850	+	0	NA	intron (NM_173465, intron 1 of 28)	LTR12F|LTR|ERV1	27693	NM_173465	91522		NM_173465	ENSG00000050767	COL23A1	-	collagen type XXIII alpha 1 chain	protein-coding
136750	chr2	181306771	181307130	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	-1298	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
139553	chr2	224921001	224921200	+	0	NA	intron (NM_001363762, intron 2 of 55)	AluSq2|SINE|Alu	25949	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
120414	chr19	43799851	43800150	+	0	NA	promoter-TSS (NM_001288763)	promoter-TSS (NM_001288763)	29	NM_001288763	284348		NM_182573	ENSG00000159871	LYPD5	HALDISIN|PRO4356	LY6/PLAUR domain containing 5	protein-coding
86058	chr16	57583521	57583980	+	0	NA	Intergenic	L1ME1|LINE|L1	-35988	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
137140	chr2	191051751	191052500	+	0	NA	intron (NM_003151, intron 14 of 23)	intron (NM_003151, intron 14 of 23)	30599	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
79509	chr16	796951	797480	+	0	NA	TTS (NM_016541)	TTS (NM_016541)	3519	NM_016541	51764		NM_016541	ENSG00000127588	GNG13	G(gamma)13|HG3J|h2-35	G protein subunit gamma 13	protein-coding
175160	chr4	55619271	55619630	+	0	NA	intron (NM_001292046, intron 2 of 8)	L1PA2|LINE|L1	16848	NM_006681	10874		NM_006681	ENSG00000109255	NMU	-	neuromedin U	protein-coding
188854	chr5	159241971	159242530	+	0	NA	intron (NR_134261, intron 2 of 2)	L1ME3D|LINE|L1	14535	NR_134261	105377682		NR_134261	ENSG00000253315	LINC01932	-	long intergenic non-protein coding RNA 1932	ncRNA
85187	chr16	46883501	46884750	+	0	NA	promoter-TSS (NM_001142466)	promoter-TSS (NM_001142466)	-237	NM_133443	84706		NM_133443	ENSG00000166123	GPT2	ALT2|GPT 2|MRT49|NEDSPM	glutamic--pyruvic transaminase 2	protein-coding
89076	chr16	88464001	88464500	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	-4668	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
182985	chr5	72018171	72018430	+	0	NA	Intergenic	Intergenic	-89175	NM_005909	4131		NM_005909	ENSG00000131711	MAP1B	DFNA83|FUTSCH|MAP5|PPP1R102|PVNH9	microtubule associated protein 1B	protein-coding
28630	chr10	58531101	58531330	+	0	NA	intron (NM_001080512, intron 1 of 20)	L1M4c|LINE|L1	18343	NM_001080512	80114		NM_025044	ENSG00000122870	BICC1	BICC|CYSRD	BicC family RNA binding protein 1	protein-coding
119782	chr19	41313301	41314000	+	0	NA	intron (NM_001346100, intron 1 of 4)	intron (NM_001346100, intron 1 of 4)	3173	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
237646	chrX	124232621	124232880	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-99910	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
173991	chr4	26308451	26309150	+	0	NA	intron (NM_001374401, intron 1 of 11)	intron (NM_001374401, intron 1 of 11)	-10946	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
155849	chr22	39453951	39454250	+	0	NA	Intergenic	Intergenic	-2912	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
24194	chr1	236000721	236001180	+	0	NA	intron (NM_002508, intron 12 of 19)	intron (NM_002508, intron 12 of 19)	64140	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
109446	chr19	740171	740330	+	0	NA	intron (NM_001040134, intron 7 of 7)	CpG	-10862	NM_173481	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
105632	chr18	829951	831600	+	0	NA	Intergenic	Intergenic	-18533	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
66862	chr14	64992401	64992800	+	0	NA	intron (NM_002028, intron 1 of 11)	Kanga2_a|DNA|TcMar-Tc2	5705	NM_002028	2342		NM_002028	ENSG00000257365	FNTB	FPTB	farnesyltransferase, CAAX box, subunit beta	protein-coding
71622	chr14	106706501	106706750	+	0	NA	Intergenic	Intergenic	144374	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
98527	chr17	47647771	47647930	+	0	NA	Intergenic	Intergenic	-2069	NM_002265	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
165298	chr3	81760871	81762080	+	0	NA	exon (NM_000158, exon 1 of 16)	exon (NM_000158, exon 1 of 16)	170	NM_000158	2632		NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	1,4-alpha-glucan branching enzyme 1	protein-coding
3606	chr1	16248971	16249480	+	0	NA	3' UTR (NM_018994, exon 10 of 10)	3' UTR (NM_018994, exon 10 of 10)	-12042	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
17922	chr1	160260951	160262000	+	0	NA	promoter-TSS (NR_147618)	promoter-TSS (NR_147618)	-274	NR_147618	100287049		NR_147618	ENSG00000228606	DCAF8-DT	-	DCAF8 divergent transcript	ncRNA
178838	chr4	153642251	153642350	+	0	NA	intron (NR_134873, intron 2 of 2)	LOR1b|LTR|ERV1	2132	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
20679	chr1	200471871	200472030	+	0	NA	Intergenic	Intergenic	-61914	NM_001281293	23528		NM_012482	ENSG00000162702	ZNF281	GZP1|ZBP-99|ZBP99|ZNP-99	zinc finger protein 281	protein-coding
17893	chr1	160093801	160094300	+	0	NA	exon (NM_001206665, exon 4 of 8)	exon (NM_001206665, exon 4 of 8)	4569	NM_052868	93185		NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
89283	chr16	88690571	88691130	+	0	NA	Intergenic	MER54B|LTR|ERVL	-4343	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
169181	chr3	156689651	156690480	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	13401	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
50987	chr12	49624471	49625530	+	0	NA	intron (NM_012272, intron 1 of 24)	intron (NM_012272, intron 1 of 24)	1439	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
152447	chr22	20605901	20606880	+	0	NA	Intergenic	Intergenic	-83165	NR_024592	266697		NR_024592		POM121L4P	POM121L1|POM121L1P	POM121 transmembrane nucleoporin like 4, pseudogene	pseudo
23940	chr1	235107271	235107430	+	0	NA	Intergenic	Intergenic	20587	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
180548	chr5	14661851	14662550	+	0	NA	TTS (NR_168439)	TTS (NR_168439)	2404	NR_168439	728178		NR_168439	ENSG00000261360	OTULIN-DT	-	OTULIN divergent transcript	ncRNA
189676	chr5	176395851	176396150	+	0	NA	intron (NM_001364126, intron 4 of 4)	AluSq|SINE|Alu	-7073	NM_001256539	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
200873	chr6	138931771	138931930	+	0	NA	intron (NM_031922, intron 8 of 19)	intron (NM_031922, intron 8 of 19)	56403	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
36689	chr11	8686821	8687080	+	0	NA	3' UTR (NM_000990, exon 5 of 5)	3' UTR (NM_000990, exon 5 of 5)	1511	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
145526	chr20	44090001	44090230	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	97073	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
46617	chr11	128610951	128612000	+	0	NA	Intergenic	Intergenic	-23917	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
157492	chr22	45321671	45322130	+	0	NA	intron (NR_146323, intron 3 of 11)	intron (NR_146323, intron 3 of 11)	3457	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
117412	chr19	19626751	19626850	+	0	NA	exon (NM_004720, exon 2 of 3)	exon (NM_004720, exon 2 of 3)	1420	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
147762	chr20	62482171	62483030	+	0	NA	Intergenic	Intergenic	-6605	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
202040	chr6	153024201	153024690	+	0	NA	exon (NM_012419, exon 4 of 5)	exon (NM_012419, exon 4 of 5)	-21630	NM_001301872	54516		NM_019041	ENSG00000112031	MTRF1L	HMRF1L|MRF1L|mtRF1a	mitochondrial translation release factor 1 like	protein-coding
107858	chr18	54828121	54829480	+	0	NA	intron (NM_004163, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	323	NM_004163	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
112541	chr19	6530451	6531870	+	0	NA	exon (NM_003811, exon 1 of 3)	exon (NM_003811, exon 1 of 3)	134	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
10795	chr1	77683201	77684280	+	0	NA	promoter-TSS (NM_001308237)	promoter-TSS (NM_001308237)	-313	NM_001308237	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
41830	chr11	67071251	67072130	+	0	NA	3' UTR (NM_001300886, exon 3 of 3)	3' UTR (NM_001300886, exon 3 of 3)	14843	NM_014578	29984		NM_014578	ENSG00000173156	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
40396	chr11	64034421	64034880	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	-1281	NM_013280	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
18578	chr1	164558771	164559580	+	0	NA	promoter-TSS (NM_002585)	promoter-TSS (NM_002585)	-9	NM_002585	5087		NM_002585	ENSG00000185630	PBX1	CAKUHED	PBX homeobox 1	protein-coding
67132	chr14	68663071	68663650	+	0	NA	intron (NM_001321818, intron 10 of 10)	LTR33|LTR|ERVL	-34573	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
237990	chrX	134544721	134544980	+	0	NA	intron (NR_024607, intron 1 of 2)	CpG-30052	1548	NR_030228	574506		NR_030228	ENSG00000208005	MIR503	MIRN503|hsa-mir-503|mir-503	microRNA 503	ncRNA
140446	chr2	233153471	233153880	+	0	NA	intron (NM_001017915, intron 9 of 26).2	HAL1|LINE|L1	93333	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
14119	chr1	120937251	120938800	+	0	NA	intron (NR_109754, intron 1 of 2)	AluSx1|SINE|Alu	-4575	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
185428	chr5	131161771	131162330	+	0	NA	non-coding (NR_134495, exon 3 of 4)	non-coding (NR_134495, exon 3 of 4)	3206	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
114321	chr19	12010071	12010280	+	0	NA	intron (NR_134928, intron 2 of 3)	L1PA3|LINE|L1	22558	NR_134928	101928464		NR_134927	ENSG00000219665	ZNF433-AS1	-	ZNF433 and ZNF878 antisense RNA 1	ncRNA
91884	chr17	7260601	7262100	+	0	NA	intron (NM_001185022, intron 2 of 4)	CpG	1128	NM_001307	1366		NM_001307	ENSG00000181885	CLDN7	CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1	claudin 7	protein-coding
134373	chr2	136243871	136244250	+	0	NA	Intergenic	Intergenic	-125911	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
129211	chr2	68223201	68223400	+	0	NA	intron (NM_000945, intron 1 of 5)	AluSx1|SINE|Alu	29232	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
54087	chr12	76060801	76061200	+	0	NA	intron (NM_001330232, intron 2 of 13)	AluJb|SINE|Alu	23685	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
59149	chr13	21530601	21530800	+	0	NA	intron (NM_152726, intron 4 of 11)	intron (NM_152726, intron 4 of 11)	-71330	NM_001286638	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
10760	chr1	77148221	77148500	+	0	NA	intron (NM_005482, intron 9 of 10)	intron (NM_005482, intron 9 of 10)	71070	NM_005482	10026		NM_005482	ENSG00000142892	PIGK	GPI8|NEDHCAS	phosphatidylinositol glycan anchor biosynthesis class K	protein-coding
177218	chr4	108484471	108484630	+	0	NA	Intergenic	LTR53B|LTR|ERVL	-72683	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
178467	chr4	148367821	148368100	+	0	NA	intron (NR_148974, intron 2 of 6)	intron (NR_148974, intron 2 of 6)	74454	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
56519	chr12	116591801	116592200	+	0	NA	Intergenic	Intergenic	32619	NM_001085481	643246		NM_001085481	ENSG00000258102	MAP1LC3B2	ATG8G	microtubule associated protein 1 light chain 3 beta 2	protein-coding
96966	chr17	42246551	42247180	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	29526	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
143107	chr20	23359651	23360050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1723	NR_109884	100505683		NR_109884	ENSG00000232645	LINC01431	-	long intergenic non-protein coding RNA 1431	ncRNA
118126	chr19	34794151	34794450	+	0	NA	Intergenic	MER41B|LTR|ERV1	-21085	NM_001007248	148103		NM_001007247	ENSG00000153896	ZNF599	-	zinc finger protein 599	protein-coding
225519	chr9	35728251	35729180	+	0	NA	intron (NM_006289, intron 1 of 56)	intron (NM_006289, intron 1 of 56)	3480	NM_006289	7094		NM_006289	ENSG00000137076	TLN1	ILWEQ|TLN|talin-1	talin 1	protein-coding
15558	chr1	150548501	150549630	+	0	NA	promoter-TSS (NM_025008)	promoter-TSS (NM_025008)	-343	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
218620	chr8	56076201	56076400	+	0	NA	Intergenic	AluSc8|SINE|Alu	1708	NR_149110	105375847		NR_149110	ENSG00000253603	CERNA3	CTA	competing endogenous lncRNA 3 for miR-645	ncRNA
179006	chr4	163662951	163663050	+	0	NA	intron (NM_001166373, intron 4 of 7)	L1MEd|LINE|L1	-49466	NM_017923	55016		NM_017923	ENSG00000145416	MARCHF1	MARCH-I|MARCH1|RNF171	membrane associated ring-CH-type finger 1	protein-coding
42744	chr11	72710121	72710730	+	0	NA	exon (NM_001135190, exon 8 of 31)	exon (NM_001135190, exon 8 of 31)	9951	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
132220	chr2	102250751	102251980	+	0	NA	Intergenic	CpG	-60137	NM_001282408	9173		NM_003856	ENSG00000115602	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor like 1	protein-coding
224722	chr9	21564071	21564430	+	0	NA	Intergenic	Intergenic	-4452	NR_152878	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
40851	chr11	65051151	65051250	+	0	NA	intron (NM_005468, intron 8 of 17)	intron (NM_005468, intron 8 of 17)	7353	NM_005468	10004		NM_005468	ENSG00000168060	NAALADL1	HILAP|I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase like 1	protein-coding
1042	chr1	1882771	1883200	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	8102	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
166880	chr3	123966771	123967150	+	0	NA	Intergenic	Intergenic	-5731	NM_022757	64770		NM_022757	ENSG00000175455	CCDC14	-	coiled-coil domain containing 14	protein-coding
63840	chr14	21509021	21509900	+	0	NA	intron (NM_019852, intron 1 of 10)	intron (NM_019852, intron 1 of 10)	1880	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
134079	chr2	131519071	131519630	+	0	NA	intron (NR_026922, intron 16 of 17)	intron (NR_026922, intron 16 of 17)	-8325	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
150748	chr21	43771171	43771730	+	0	NA	Intergenic	Intergenic	4858	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
204077	chr7	2072221	2072680	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	16602	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
71275	chr14	105247851	105249250	+	0	NA	promoter-TSS (NM_033271)	promoter-TSS (NM_033271)	17	NM_033271	90135		NM_033271	ENSG00000184887	BTBD6	BDPL	BTB domain containing 6	protein-coding
40158	chr11	62877801	62878000	+	0	NA	intron (NM_001012662, intron 3 of 11)	AluSx|SINE|Alu	-2996	NM_001013251	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
31313	chr10	92689051	92690100	+	0	NA	promoter-TSS (NM_002729)	promoter-TSS (NM_002729)	-380	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
174299	chr4	38507971	38508530	+	0	NA	intron (NR_110951, intron 1 of 7)	intron (NR_110951, intron 1 of 7)	-1517	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
8920	chr1	43990171	43990530	+	0	NA	exon (NM_001005417, exon 7 of 7)	exon (NM_001005417, exon 7 of 7)	-1246	NM_001349127	149473		NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding
199863	chr6	127794121	127794780	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L2a|LINE|L2	60738	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
104274	chr17	80792571	80792730	+	0	NA	intron (NM_020761, intron 7 of 33)	intron (NM_020761, intron 7 of 33)	12982	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
26962	chr10	26642901	26643140	+	0	NA	promoter-TSS (NR_026794)	promoter-TSS (NR_026794)	-88	NR_026794	731789		NR_026794		FAM238B	LINC00202-2	family with sequence similarity 238 member B	ncRNA
154470	chr22	35553721	35553980	+	0	NA	3' UTR (NM_014310, exon 3 of 3)	3' UTR (NM_014310, exon 3 of 3)	13019	NM_014310	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
208892	chr7	73843951	73844600	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1759	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
4456	chr1	21337321	21338050	+	0	NA	intron (NM_001113348, intron 1 of 18)	MIRb|SINE|MIR	7819	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
222891	chr8	142784471	142784880	+	0	NA	TTS (NM_003695)	TTS (NM_003695)	1864	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
57711	chr12	122866571	122866750	+	0	NA	3' UTR (NM_024667, exon 4 of 4)	3' UTR (NM_024667, exon 4 of 4)	29464	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
180989	chr5	35804251	35804630	+	0	NA	intron (NM_024867, intron 34 of 36)	intron (NM_024867, intron 34 of 36)	-52451	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
77181	chr15	80159551	80160130	+	0	NA	exon (NM_000137, exon 3 of 14)	exon (NM_000137, exon 3 of 14)	6841	NM_000137	2184		NM_000137	ENSG00000103876	FAH	-	fumarylacetoacetate hydrolase	protein-coding
220430	chr8	100294151	100294650	+	0	NA	intron (NM_001280539, intron 2 of 10)	intron (NM_001280539, intron 2 of 10)	7793	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
165266	chr3	75431471	75431630	+	0	NA	intron (NR_024241, intron 2 of 7)	intron (NR_024241, intron 2 of 7)	3565	NR_024241	692099		NR_024241	ENSG00000291223	FAM86DP	FAM86D	family with sequence similarity 86 member D, pseudogene	pseudo
229381	chr9	121121251	121122220	+	0	NA	promoter-TSS (NM_001330762)	promoter-TSS (NM_001330762)	-35	NR_163191	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
196817	chr6	46129381	46130780	+	0	NA	promoter-TSS (NM_014936)	promoter-TSS (NM_014936)	91	NM_014936	22875		NM_014936	ENSG00000001561	ENPP4	NPP4	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding
32726	chr10	104268051	104269730	+	0	NA	promoter-TSS (NR_039702)	promoter-TSS (NR_039702)	17	NM_001191013	119391		NM_183239	ENSG00000065621	GSTO2	GSTO 2-2|bA127L20.1	glutathione S-transferase omega 2	protein-coding
193879	chr6	31579521	31580190	+	0	NA	TTS (NM_009588).7	TTS (NM_009588).7	2569	NM_002341	4050		NM_002341	ENSG00000227507	LTB	TNFC|TNFSF3|TNLG1C|p33	lymphotoxin beta	protein-coding
126	chr1	503251	504450	+	0	NA	Intergenic	AluJr|SINE|Alu	-8405	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
70125	chr14	100256451	100256750	+	0	NA	intron (NM_003403, intron 1 of 4)	L1MB4|LINE|L1	17456	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
144471	chr20	35606971	35607130	+	0	NA	intron (NR_119376, intron 2 of 42)	intron (NR_119376, intron 2 of 42)	512	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
83602	chr16	28186421	28187240	+	0	NA	intron (NM_015171, intron 1 of 23)	AluJr|SINE|Alu	25135	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
234972	chrX	39335871	39336230	+	0	NA	Intergenic	Intergenic	-8688	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
77888	chr15	89101701	89101900	+	0	NA	intron (NM_007011, intron 2 of 14)	intron (NM_007011, intron 2 of 14)	13344	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
27444	chr10	31862321	31862730	+	0	NA	intron (NM_018287, intron 3 of 19)	intron (NM_018287, intron 3 of 19)	46401	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
175313	chr4	68312671	68312930	+	0	NA	3' UTR (NM_133370, exon 16 of 16)	3' UTR (NM_133370, exon 16 of 16)	37290	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
187447	chr5	142113671	142113980	+	0	NA	intron (NM_030571, intron 1 of 7)	L1MB3|LINE|L1	5046	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
119850	chr19	41421321	41421580	+	0	NA	intron (NM_001164783, intron 5 of 8)	L2b|LINE|L2	6543	NM_001385648	374907		NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
103463	chr17	78324321	78324780	+	0	NA	Intergenic	Intergenic	35117	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
2181	chr1	8522901	8523100	+	0	NA	intron (NM_012102, intron 8 of 23)	AluJb|SINE|Alu	-28087	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
181051	chr5	36150621	36151290	+	0	NA	intron (NM_001007527, intron 1 of 17)	intron (NM_001007527, intron 1 of 17)	932	NM_001007527	92255		NM_001007527	ENSG00000164187	LMBRD2	DENBA	LMBR1 domain containing 2	protein-coding
34944	chr11	449671	450600	+	0	NA	promoter-TSS (NM_001329544).2	promoter-TSS (NM_001329544).2	-144	NR_138046	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
204226	chr7	2534271	2535180	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	7651	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
75104	chr15	64463921	64464180	+	0	NA	intron (NM_015042, intron 1 of 9)	intron (NM_015042, intron 1 of 9)	3472	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
191899	chr6	15386951	15387250	+	0	NA	intron (NM_001267040, intron 2 of 17)	intron (NM_001267040, intron 2 of 17)	138245	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
136882	chr2	189287971	189288130	+	0	NA	Intergenic	Intergenic	-108289	NM_000393	1290		NM_000393	ENSG00000204262	COL5A2	EDSC|EDSCL2	collagen type V alpha 2 chain	protein-coding
140479	chr2	233184071	233184230	+	0	NA	intron (NM_001017915, intron 19 of 26).2	MIR3|SINE|MIR	-67421	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
222397	chr8	134076271	134076430	+	0	NA	Intergenic	L1HS|LINE|L1	189854	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
195564	chr6	37492921	37493180	+	0	NA	intron (NM_138493, intron 1 of 3)	intron (NM_138493, intron 1 of 3)	6843	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
157985	chr22	49838701	49840180	+	0	NA	Intergenic	Intergenic	-11567	NM_001304808	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
162222	chr3	47054601	47054950	+	0	NA	intron (NR_146158, intron 16 of 21)	intron (NR_146158, intron 16 of 21)	43233	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
9652	chr1	52625221	52625480	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-7818	NR_135156	348378		NM_001042693	ENSG00000182183	SHISAL2A	FAM159A|PRO7171|WWLS2783	shisa like 2A	protein-coding
126565	chr2	28628571	28628730	+	0	NA	intron (NM_153021, intron 52 of 57)	intron (NM_153021, intron 52 of 57)	62293	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
171308	chr3	195960801	195961700	+	0	NA	intron (NR_003264, intron 16 of 16)	intron (NR_003264, intron 16 of 16)	29029	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
210344	chr7	99549951	99550050	+	0	NA	intron (NM_145111, intron 1 of 1)	L1PA5|LINE|L1	2114	NM_145111	221786		NM_145111	ENSG00000221909	FAM200A	C7orf38	family with sequence similarity 200 member A	protein-coding
41728	chr11	66661971	66662900	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluSx|SINE|Alu	15452	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
179494	chr4	184640471	184640630	+	0	NA	intron (NM_032991, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	8897	NM_004346	836		NM_004346	ENSG00000164305	CASP3	CPP32|CPP32B|SCA-1	caspase 3	protein-coding
40026	chr11	62673951	62674050	+	0	NA	TTS (NM_001085372)	TTS (NM_001085372)	-2217	NR_160410								
29316	chr10	69346051	69346150	+	0	NA	intron (NM_033498, intron 5 of 20)	intron (NM_033498, intron 5 of 20)	27253	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
68540	chr14	89276421	89276700	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	140673	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
64061	chr14	22549621	22550600	+	0	NA	Intergenic	Intergenic	6952	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
189649	chr5	176198701	176199700	+	0	NA	promoter-TSS (NR_036494)	promoter-TSS (NR_036494)	95	NR_036494	643201		NR_036494	ENSG00000248596	CEP192P1	-	CEP192 pseudogene 1	pseudo
229887	chr9	126508001	126508400	+	0	NA	Intergenic	Intergenic	-97696	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
196311	chr6	43059151	43060350	+	0	NA	promoter-TSS (NM_015950)	promoter-TSS (NM_015950)	119	NM_001289035	89953		NM_138343	ENSG00000137171	KLC4	KNSL8|bA387M24.3	kinesin light chain 4	protein-coding
84152	chr16	29745011	29747080	+	0	NA	promoter-TSS (NM_175900)	promoter-TSS (NM_175900)	-55	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
69004	chr14	91494351	91494900	+	0	NA	intron (NR_158976, intron 2 of 16)	AluSz|SINE|Alu	15685	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
165784	chr3	105790551	105790980	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	76826	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
38067	chr11	35185671	35186430	+	0	NA	intron (NM_001202557, intron 3 of 8)	intron (NM_001202557, intron 3 of 8)	23100	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
184981	chr5	113519571	113519930	+	0	NA	intron (NM_001345976, intron 2 of 27)	MIRb|SINE|MIR	6056	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
41183	chr11	65629751	65630250	+	0	NA	intron (NM_032223, intron 26 of 34)	intron (NM_032223, intron 26 of 34)	-6310	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
4861	chr1	23741921	23742180	+	0	NA	Intergenic	Intergenic	-1316	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
130071	chr2	74480551	74481200	+	0	NA	exon (NM_032779, exon 5 of 9)	exon (NM_032779, exon 5 of 9)	2123	NM_032779	84865		NM_032779	ENSG00000135637	CCDC142	-	coiled-coil domain containing 142	protein-coding
112325	chr19	5908351	5908450	+	0	NA	intron (NM_001017921, intron 1 of 1)	AluSx3|SINE|Alu	3528	NM_001017921	400673		NM_001017921	ENSG00000187650	VMAC	-	vimentin type intermediate filament associated coiled-coil protein	protein-coding
168958	chr3	152380151	152381300	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-39735	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
33190	chr10	113381671	113382600	+	0	NA	Intergenic	Intergenic	-168696	NM_001177660	3026		NM_004132	ENSG00000148702	HABP2	FSAP|HABP|HGFAL|NMTC5|PHBP	hyaluronan binding protein 2	protein-coding
164018	chr3	53196971	53197500	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	28532	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
16885	chr1	155852151	155852450	+	0	NA	intron (NM_001282861, intron 2 of 20)	intron (NM_001282861, intron 2 of 20)	4914	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
101121	chr17	65025021	65025280	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluJb|SINE|Alu	30624	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
167393	chr3	128882801	128883200	+	0	NA	intron (NR_033426, intron 1 of 17)	intron (NR_033426, intron 1 of 17)	3380	NM_014049	28976		NM_014049	ENSG00000177646	ACAD9	MC1DN20|NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
3228	chr1	13778851	13779350	+	0	NA	exon (NM_012231, exon 8 of 10)	exon (NM_012231, exon 8 of 10)	29685	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
55052	chr12	96429021	96429280	+	0	NA	Intergenic	Intergenic	-28711	NM_001170464	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
170291	chr3	184325351	184325680	+	0	NA	promoter-TSS (NR_003055)	promoter-TSS (NR_003055)	-181	NR_003055	692107		NR_003055	ENSG00000212158	SNORD66	HBII-142	small nucleolar RNA, C/D box 66	snoRNA
30044	chr10	73809601	73809800	+	0	NA	TTS (NR_160745)	TTS (NR_160745)	1898	NM_001330107	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
239477	chrY	56736421	56736900	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-217595	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
218174	chr8	41963621	41964150	+	0	NA	intron (NM_001305878, intron 8 of 13)	intron (NM_001305878, intron 8 of 13)	-67144	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
109479	chr19	811021	811600	+	0	NA	3' UTR (NM_002819, exon 15 of 15)	3' UTR (NM_002819, exon 15 of 15)	-2274	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	mir-3187	microRNA 3187	ncRNA
99588	chr17	50507821	50508880	+	0	NA	promoter-TSS (NM_001366294)	promoter-TSS (NM_001366294)	-89	NR_158785	84073		NM_032133	ENSG00000136449	MYCBPAP	AMAP-1|AMAP1	MYCBP associated protein	protein-coding
110023	chr19	1448801	1449250	+	0	NA	Intergenic	Intergenic	-1096	NM_005883	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
165683	chr3	101872901	101873100	+	0	NA	Intergenic	AluSx1|SINE|Alu	23486	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
237679	chrX	124352601	124353430	+	0	NA	intron (NM_002351, intron 1 of 3)	L1MA6|LINE|L1	6452	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
107677	chr18	49326201	49327100	+	0	NA	intron (NM_001374444, intron 3 of 10)	L2b|LINE|L2	133995	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
99312	chr17	49820651	49821550	+	0	NA	intron (NM_001199155, intron 8 of 13)	intron (NM_001199155, intron 8 of 13)	-24786	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
155876	chr22	39500401	39500930	+	0	NA	intron (NM_001304564, intron 1 of 6)	MIRb|SINE|MIR	565	NM_001304564	54471		NM_013298	ENSG00000100335	MIEF1	AltMIEF1|D3A|HSU79252|L0R8F8|MID51|MIEF1-MP|OPA14|SMCR7L|dJ1104E15.3	mitochondrial elongation factor 1	protein-coding
182492	chr5	62624821	62624950	+	0	NA	intron (NM_016338, intron 29 of 29)	AluYm1|SINE|Alu	46066	NM_181506	100130733		NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
33165	chr10	112946851	112947150	+	0	NA	Intergenic	Intergenic	-3247	NM_001146274	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
161405	chr3	41222171	41222530	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	22845	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
71755	chr15	21002151	21002480	+	0	NA	promoter-TSS (NR_145444)	promoter-TSS (NR_145444)	-962	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
44926	chr11	115759701	115759900	+	0	NA	intron (NR_034148, intron 1 of 2)	CpG	400	NR_034148	283143		NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
168608	chr3	149487651	149487850	+	0	NA	exon (NM_004617, exon 3 of 5)	exon (NM_004617, exon 3 of 5)	13053	NM_004617	7104		NM_004617	ENSG00000169903	TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
39211	chr11	57529901	57531680	+	0	NA	promoter-TSS (NM_012456)	promoter-TSS (NM_012456)	-36	NM_012456	26519		NM_012456	ENSG00000134809	TIMM10	TIM10|TIM10A|TIMM10A	translocase of inner mitochondrial membrane 10	protein-coding
227342	chr9	89462251	89462450	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	17540	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
126472	chr2	28366271	28367130	+	0	NA	Intergenic	Intergenic	-26158	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
114545	chr19	12871651	12872280	+	0	NA	intron (NM_014975, intron 24 of 25)	intron (NM_014975, intron 24 of 25)	9484	NM_001375	1777		NM_001375	ENSG00000105612	DNASE2	AIPCS|DNASE2A|DNL|DNL2	deoxyribonuclease 2, lysosomal	protein-coding
79421	chr16	692651	692900	+	0	NA	3' UTR (NM_153350, exon 6 of 6)	3' UTR (NM_153350, exon 6 of 6)	-2377	NM_032259	84219		NM_032259	ENSG00000127580	WDR24	C16orf21|JFP7	WD repeat domain 24	protein-coding
60961	chr13	46585471	46585630	+	0	NA	intron (NM_015116, intron 1 of 18)	AluY|SINE|Alu	32380	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
55544	chr12	105420701	105420930	+	0	NA	Intergenic	Intergenic	90124	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
30552	chr10	79705921	79706900	+	0	NA	exon (NM_001278495, exon 2 of 7)	exon (NM_001278495, exon 2 of 7)	3183	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
110329	chr19	1866621	1867450	+	0	NA	Intergenic	Intergenic	-3456	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
117741	chr19	29623731	29624780	+	0	NA	Intergenic	Intergenic	17972	NR_027368	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
227193	chr9	87970351	87971030	+	0	NA	intron (NM_001039803, intron 4 of 7)	intron (NM_001039803, intron 4 of 7)	3843	NM_001170639	23552		NM_012119	ENSG00000156345	CDK20	CCRK|CDCH|P42|PNQALRE	cyclin dependent kinase 20	protein-coding
59347	chr13	24605901	24606850	+	0	NA	Intergenic	L1PA16|LINE|L1	26167	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
167099	chr3	127587471	127587800	+	0	NA	promoter-TSS (NR_107016)	promoter-TSS (NR_107016)	-459	NR_107016	102465857		NR_107016	ENSG00000276083	MIR7976	hsa-mir-7976	microRNA 7976	ncRNA
142562	chr20	5205171	5205730	+	0	NA	Intergenic	Intergenic	78442	NM_003818	8760		NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
52195	chr12	54357101	54357450	+	0	NA	intron (NR_120487, intron 1 of 3)	intron (NR_120487, intron 1 of 3)	3584	NR_120486	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
116151	chr19	17384951	17385380	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7823	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
86126	chr16	57678871	57679030	+	0	NA	intron (NM_170776, intron 4 of 11)	intron (NM_170776, intron 4 of 11)	10644	NM_001308360	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
126104	chr2	25915851	25916900	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-37888	NM_018263	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
20861	chr1	201982101	201983680	+	0	NA	promoter-TSS (NM_001319182)	promoter-TSS (NM_001319182)	242	NM_001319183	6051		NM_020216	ENSG00000176393	RNPEP	AP-B|APB	arginyl aminopeptidase	protein-coding
193846	chr6	31533871	31534800	+	0	NA	intron (NM_080598, intron 6 of 10).7	intron (NM_080598, intron 6 of 10).7	2114	NR_003140	692233		NR_003140	ENSG00000201785	SNORD117	U83	small nucleolar RNA, C/D box 117	snoRNA
195105	chr6	35611121	35611900	+	0	NA	intron (NM_001145775, intron 6 of 11)	intron (NM_001145775, intron 6 of 11)	53279	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
135854	chr2	170823101	170824630	+	0	NA	intron (NM_000817, intron 3 of 16)	intron (NM_000817, intron 3 of 16)	6978	NM_000817	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
183289	chr5	76544201	76545330	+	0	NA	intron (NM_006633, intron 2 of 35)	L1ME4b|LINE|L1	-2644	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
14317	chr1	143873621	143874180	+	0	NA	promoter-TSS (NR_027484)	promoter-TSS (NR_027484)	-843	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
52408	chr12	55750921	55751180	+	0	NA	3' UTR (NM_005811, exon 3 of 3)	3' UTR (NM_005811, exon 3 of 3)	7928	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
8764	chr1	42735371	42735780	+	0	NA	3' UTR (NM_001185117, exon 3 of 3)	3' UTR (NM_001185117, exon 3 of 3)	4661	NM_148960	149461		NM_148960	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
93827	chr17	20843501	20844130	+	0	NA	Intergenic	CpG	-24712	NR_160710	440416		NR_104185	ENSG00000233098	CCDC144NL-AS1	-	CCDC144NL antisense RNA 1	ncRNA
167142	chr3	127821301	127821700	+	0	NA	intron (NM_001003794, intron 2 of 7)	intron (NM_001003794, intron 2 of 7)	1382	NM_007283	11343		NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
52160	chr12	54285451	54286580	+	0	NA	3' UTR (NM_002136, exon 10 of 10)	3' UTR (NM_002136, exon 10 of 10)	5289	NR_135167	3178		NM_002136	ENSG00000135486	HNRNPA1	ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|MPD3|UP 1|hnRNP A1|hnRNP-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding
97809	chr17	44826251	44826550	+	0	NA	intron (NM_001080383, intron 1 of 2)	AluY|SINE|Alu	3887	NM_005497	10052		NM_005497	ENSG00000182963	GJC1	CX45|GJA7	gap junction protein gamma 1	protein-coding
208725	chr7	73399351	73399980	+	0	NA	Intergenic	MER50|LTR|ERV1	-34113	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
20400	chr1	198180501	198180700	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	23602	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
218402	chr8	47259421	47259730	+	0	NA	Intergenic	Intergenic	-1303	NM_001352957	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
166752	chr3	122078071	122078230	+	0	NA	intron (NM_176892, intron 1 of 5)	intron (NM_176892, intron 1 of 5)	301	NM_176892	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
202454	chr6	158058471	158058630	+	0	NA	intron (NM_003898, intron 6 of 26)	intron (NM_003898, intron 6 of 26)	41457	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
20168	chr1	192813371	192814300	+	0	NA	Intergenic	L2b|LINE|L2	4796	NM_002923	5997		NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G protein signaling 2	protein-coding
58072	chr12	124549951	124550050	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	17612	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
114827	chr19	13821201	13822100	+	0	NA	intron (NM_023072, intron 9 of 12)	AluJr|SINE|Alu	14709	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
229506	chr9	122267821	122268280	+	0	NA	intron (NM_001346339, intron 2 of 7)	intron (NM_001346339, intron 2 of 7)	3168	NR_144421	92399		NM_138777	ENSG00000148187	MRRF	MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding
46952	chr11	134415271	134415430	+	0	NA	Intergenic	Intergenic	-3108	NM_001367973	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
4110	chr1	19314601	19314950	+	0	NA	intron (NM_001040126, intron 2 of 7)	intron (NM_001040126, intron 2 of 7)	2449	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
2455	chr1	9640471	9640830	+	0	NA	Intergenic	L1MC3|LINE|L1	-11081	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
162197	chr3	47005851	47006400	+	0	NA	intron (NM_001365116, intron 42 of 52)	intron (NM_001365116, intron 42 of 52)	-5417	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
750	chr1	1495201	1495930	+	0	NA	exon (NM_001317238, exon 14 of 14)	exon (NM_001317238, exon 14 of 14)	-16597	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
13171	chr1	112344601	112345250	+	0	NA	Intergenic	Intergenic	-51289	NM_018704	55917		NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
92973	chr17	17115221	17115680	+	0	NA	intron (NM_015134, intron 3 of 22)	intron (NM_015134, intron 3 of 22)	72993	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
31235	chr10	91811551	91812050	+	0	NA	intron (NM_025235, intron 1 of 26)	AluY|SINE|Alu	13374	NM_025235	80351		NM_025235	ENSG00000107854	TNKS2	ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6	tankyrase 2	protein-coding
134046	chr2	131132651	131132950	+	0	NA	intron (NM_001267064, intron 5 of 7)	intron (NM_001267064, intron 5 of 7)	27953	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
32203	chr10	101774451	101775100	+	0	NA	exon (NM_033163, exon 4 of 6)	exon (NM_033163, exon 4 of 6)	1339	NM_033164	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
142475	chr20	4221321	4221680	+	0	NA	3' UTR (NM_000678, exon 2 of 2)	3' UTR (NM_000678, exon 2 of 2)	27787	NM_000678	146		NM_000678	ENSG00000171873	ADRA1D	ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2	adrenoceptor alpha 1D	protein-coding
175019	chr4	52617451	52617950	+	0	NA	intron (NM_022832, intron 4 of 8)	intron (NM_022832, intron 4 of 8)	38839	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
37000	chr11	11965751	11966050	+	0	NA	exon (NM_013253, exon 7 of 8)	exon (NM_013253, exon 7 of 8)	42739	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
138428	chr2	205766801	205767030	+	0	NA	intron (NM_201266, intron 15 of 16)	intron (NM_201266, intron 15 of 16)	84414	NM_201267	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
61497	chr13	52620671	52621030	+	0	NA	intron (NM_001011725, intron 1 of 5)	AluJb|SINE|Alu	3325	NM_001011725	144983		NM_001011724	ENSG00000139675	HNRNPA1L2	-	heterogeneous nuclear ribonucleoprotein A1 like 2	protein-coding
224895	chr9	32508471	32509000	+	0	NA	intron (NM_014314, intron 1 of 17)	L1PA7|LINE|L1	17461	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
81381	chr16	5070421	5070680	+	0	NA	Intergenic	Intergenic	-1293	NM_019109	56052		NM_019109	ENSG00000033011	ALG1	CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1	ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase	protein-coding
85389	chr16	50290021	50290530	+	0	NA	intron (NM_001114, intron 2 of 25)	intron (NM_001114, intron 2 of 25)	-2341	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
131625	chr2	96966101	96966500	+	0	NA	intron (NM_001122646, intron 5 of 16)	intron (NM_001122646, intron 5 of 16)	20280	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
13878	chr1	118987671	118987830	+	0	NA	exon (NM_001330677, exon 1 of 8)	exon (NM_001330677, exon 1 of 8)	593	NM_001330677	6913		NM_152380	ENSG00000092607	TBX15	TBX14	T-box transcription factor 15	protein-coding
691	chr1	1393521	1393980	+	0	NA	intron (NR_146723, intron 4 of 13)	intron (NR_146723, intron 4 of 13)	4592	NM_001350497	81669		NM_030937	ENSG00000221978	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
171971	chr4	911171	911330	+	0	NA	intron (NM_001318134, intron 1 of 24)	intron (NM_001318134, intron 1 of 24)	21066	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
6191	chr1	27445351	27445880	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	44552	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
105555	chr17	83207071	83207430	+	0	NA	Intergenic	Intergenic	-19647	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
82816	chr16	21485421	21485680	+	0	NA	intron (NR_027155, intron 1 of 28)	intron (NR_027155, intron 1 of 28)	-15976	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
127943	chr2	46539351	46540000	+	0	NA	intron (NM_001371283, intron 1 of 3)	intron (NM_001371283, intron 1 of 3)	-2815	NM_012249	23433		NM_012249	ENSG00000119729	RHOQ	ARHQ|HEL-S-42|RASL7A|TC10|TC10A	ras homolog family member Q	protein-coding
177773	chr4	122746471	122746830	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	13946	NM_152618	166379		NM_152618	ENSG00000181004	BBS12	C4orf24	Bardet-Biedl syndrome 12	protein-coding
49541	chr12	26299001	26299580	+	0	NA	Intergenic	Intergenic	103717	NM_005086	8082		NM_005086	ENSG00000123096	SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
84911	chr16	31220901	31221100	+	0	NA	intron (NM_001008274, intron 5 of 6)	intron (NM_001008274, intron 5 of 6)	-3865	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
150510	chr21	42877971	42878130	+	0	NA	intron (NR_048535, intron 1 of 10)	AluY|SINE|Alu	1225	NM_001260477	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
110590	chr19	2166871	2167230	+	0	NA	intron (NM_032482, intron 1 of 27)	L1MD2|LINE|L1	3117	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
185872	chr5	132658001	132658780	+	0	NA	intron (NM_001354991, intron 2 of 4)	intron (NM_001354991, intron 2 of 4)	217	NM_002188	3596		NM_002188	ENSG00000169194	IL13	IL-13|P600	interleukin 13	protein-coding
1776	chr1	6036751	6036850	+	0	NA	intron (NM_001199860, intron 1 of 15)	L2a|LINE|L2	2112	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
200091	chr6	130185321	130185780	+	0	NA	intron (NM_001258275, intron 7 of 13)	AluSc8|SINE|Alu	30335	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
112416	chr19	6217251	6217550	+	0	NA	intron (NM_005934, intron 7 of 11)	intron (NM_005934, intron 7 of 11)	62575	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
152496	chr22	20926351	20926450	+	0	NA	intron (NR_156180, intron 1 of 3)	intron (NR_156180, intron 1 of 3)	8993	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
6438	chr1	28234051	28234400	+	0	NA	Intergenic	AluSg|SINE|Alu	-1196	NR_159454	22826		NM_014280	ENSG00000126698	DNAJC8	HSPC331|SPF31	DnaJ heat shock protein family (Hsp40) member C8	protein-coding
69192	chr14	92663601	92663800	+	0	NA	intron (NM_024832, intron 7 of 9)	intron (NM_024832, intron 7 of 9)	84927	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
142766	chr20	10568001	10568280	+	0	NA	intron (NM_001009608, intron 4 of 7)	ERVL-E-int|LTR|ERVL	81555	NR_106930	102465525		NR_106930	ENSG00000273745	MIR6870	hsa-mir-6870	microRNA 6870	ncRNA
58963	chr13	19847771	19847930	+	0	NA	intron (NM_001142684, intron 4 of 7)	AluY|SINE|Alu	15786	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
121741	chr19	47740921	47741830	+	0	NA	exon (NM_014601, exon 6 of 6)	exon (NM_014601, exon 6 of 6)	-4171	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
26460	chr10	17510201	17510680	+	0	NA	Intergenic	Intergenic	-55845	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
239499	chrY	56758421	56759430	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-195330	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
109497	chr19	825571	825800	+	0	NA	Intergenic	Intergenic	-2152	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
9475	chr1	50954771	50954930	+	0	NA	intron (NM_007051, intron 1 of 18)	AluJr|SINE|Alu	5417	NM_007051	11124		NM_007051	ENSG00000185104	FAF1	CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1	Fas associated factor 1	protein-coding
26108	chr10	13346921	13348700	+	0	NA	intron (NR_164738, intron 1 of 9)	CpG	483	NM_001375769	22929		NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
211193	chr7	102605571	102606150	+	0	NA	exon (NM_006989, exon 5 of 21)	exon (NM_006989, exon 5 of 21)	10896	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
235387	chrX	45040921	45041180	+	0	NA	intron (NM_001291416, intron 8 of 28)	SVA_D|Retroposon|SVA	159826	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
51795	chr12	53378021	53378280	+	0	NA	Intergenic	AluSp|SINE|Alu	-2026	NM_001251825	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
105389	chr17	82718551	82718850	+	0	NA	intron (NR_046408, intron 2 of 6)	intron (NR_046408, intron 2 of 6)	1994	NM_024619	79672		NM_024619	ENSG00000141560	FN3KRP	FN3KL	fructosamine 3 kinase related protein	protein-coding
140836	chr2	236956121	236956580	+	0	NA	Intergenic	Intergenic	99817	NR_135202	93463		NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA
75092	chr15	64430021	64430980	+	0	NA	intron (NR_135855, intron 10 of 11)	intron (NR_135855, intron 10 of 11)	-30078	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
237697	chrX	124373571	124373930	+	0	NA	TTS (NM_001114937)	TTS (NM_001114937)	27187	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
22066	chr1	211332121	211332480	+	0	NA	intron (NM_001319207, intron 1 of 10)	intron (NM_001319207, intron 1 of 10)	5467	NM_001033910	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
107699	chr18	49493851	49493950	+	0	NA	Intergenic	Intergenic	-1435	NM_001199342	6139		NM_000985	ENSG00000265681	RPL17	L17|PD-1|RPL23|uL22	ribosomal protein L17	protein-coding
168345	chr3	141881801	141882300	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	5407	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
91843	chr17	7207421	7208130	+	0	NA	promoter-TSS (NM_001369566)	promoter-TSS (NM_001369566)	-504	NM_001369566	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
26801	chr10	23368421	23369280	+	0	NA	Intergenic	Intergenic	-24053	NM_153714	256815		NM_153714	ENSG00000179133	C10orf67	C10orf115|LINC01552	chromosome 10 open reading frame 67	protein-coding
140511	chr2	233209301	233210350	+	0	NA	Intergenic	Intergenic	-41746	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
26495	chr10	17859801	17860030	+	0	NA	intron (NM_002438, intron 9 of 29)	L1MEi|LINE|L1	14808	NR_030167	574445		NR_030167	ENSG00000207938	MIR511	MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511	microRNA 511	ncRNA
168870	chr3	152294251	152294780	+	0	NA	intron (NM_001376823, intron 1 of 10)	AluY|SINE|Alu	-4499	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
166556	chr3	115657221	115657550	+	0	NA	intron (NM_002045, intron 1 of 2)	intron (NM_002045, intron 1 of 2)	33875	NM_001130064	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
141109	chr2	238573371	238573530	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-17951	NR_037809	151171		NR_037809	ENSG00000225493	LINC01107	-	long intergenic non-protein coding RNA 1107	ncRNA
51760	chr12	53294751	53296330	+	0	NA	promoter-TSS (NM_002624)	promoter-TSS (NM_002624)	-2	NM_002624	5204		NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
135030	chr2	156316001	156316450	+	0	NA	Intergenic	Intergenic	16496	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
80011	chr16	1920801	1921400	+	0	NA	Intergenic	Intergenic	-2685	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
229702	chr9	124768771	124769350	+	0	NA	intron (NM_001278546, intron 1 of 9)	intron (NM_001278546, intron 1 of 9)	2251	NM_033334	2649		NM_001489	ENSG00000148200	NR6A1	CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR	nuclear receptor subfamily 6 group A member 1	protein-coding
232642	chr9	136471771	136472130	+	0	NA	intron (NM_014866, intron 4 of 31)	intron (NM_014866, intron 4 of 31)	-11060	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
70236	chr14	101038301	101038500	+	0	NA	Intergenic	(GTG)n|Simple_repeat|Simple_repeat	-1290	NR_029861	442913		NR_029861	ENSG00000283279	MIR376C	MIR368|MIRN368|MIRN376C|hsa-mir-368|miRNA368|mir-376c	microRNA 376c	ncRNA
174026	chr4	26788021	26788380	+	0	NA	Intergenic	Intergenic	72044	NR_134675	105374546		NR_134673		STIM2-AS1	-	STIM2 antisense RNA 1	ncRNA
67676	chr14	73135071	73135500	+	0	NA	Intergenic	Intergenic	-1222	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
160175	chr3	23439321	23439580	+	0	NA	intron (NM_001370225, intron 3 of 5)	intron (NM_001370225, intron 3 of 5)	236123	NM_001370228	7325		NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
118242	chr19	35217701	35217900	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	10925	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
222379	chr8	133671671	133672230	+	0	NA	intron (NR_134462, intron 1 of 2)	THE1B|LTR|ERVL-MaLR	12116	NR_134462	105375773		NR_134462	ENSG00000289906	LINC03024	-	long intergenic non-protein coding RNA 3024	ncRNA
140497	chr2	233197621	233198080	+	0	NA	intron (NM_001017915, intron 24 of 26).2	L2a|LINE|L2	-53721	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
19833	chr1	182850071	182850780	+	0	NA	intron (NM_001357, intron 3 of 27)	AluJr|SINE|Alu	-10834	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
4270	chr1	19659571	19660630	+	0	NA	Intergenic	(GTTTTT)n|Simple_repeat|Simple_repeat	-4775	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
150767	chr21	43802271	43802430	+	0	NA	exon (NM_003683, exon 12 of 13)	exon (NM_003683, exon 12 of 13)	10217	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
62680	chr13	102625001	102625500	+	0	NA	intron (NR_160411, intron 6 of 28)	AluY|SINE|Alu	28264	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
191877	chr6	15313451	15313750	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	64745	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
86313	chr16	59259501	59259900	+	0	NA	Intergenic	L1M4a2|LINE|L1	495491	NR_028471	644649		NR_028471		APOOP5	-	apolipoprotein O pseudogene 5	pseudo
90139	chr17	118321	118600	+	0	NA	Intergenic	Intergenic	-19109	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
155439	chr22	38462871	38463030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5112	NM_016657	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
63515	chr13	114280151	114282800	+	0	NA	promoter-TSS (NM_001353652)	promoter-TSS (NM_001353652)	-126	NM_080687	65110		NM_023011	ENSG00000169062	UPF3A	HUPF3A|RENT3A|UPF3	UPF3A regulator of nonsense mediated mRNA decay	protein-coding
177674	chr4	121764771	121765480	+	0	NA	promoter-TSS (NM_001384332)	promoter-TSS (NM_001384332)	39	NM_001384332	132332		NM_152399	ENSG00000164112	SMIM43	NEMEP|TMEM155	small integral membrane protein 43	protein-coding
236135	chrX	57918951	57919330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8682	NM_007156	7789		NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger X-linked duplicated A	protein-coding
213720	chr7	140268251	140268350	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	91039	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
109836	chr19	1194201	1195330	+	0	NA	Intergenic	CpG	-11013	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
77687	chr15	85639971	85640130	+	0	NA	intron (NM_007200, intron 9 of 36)	MIR|SINE|MIR	20100	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
92062	chr17	7510351	7510980	+	0	NA	intron (NM_000937, intron 22 of 29)	intron (NM_000937, intron 22 of 29)	26299	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
206709	chr7	36516851	36517280	+	0	NA	intron (NM_001177506, intron 20 of 21)	intron (NM_001177506, intron 20 of 21)	83055	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
136707	chr2	181148201	181149150	+	0	NA	intron (NR_130784, intron 1 of 4)	MER2|DNA|TcMar-Tigger	24838	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
111943	chr19	4794351	4794600	+	0	NA	3' UTR (NM_018708, exon 1 of 1)	3' UTR (NM_018708, exon 1 of 1)	2741	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
219010	chr8	63195701	63196180	+	0	NA	intron (NM_001277815, intron 5 of 5)	AluJb|SINE|Alu	26937	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
193391	chr6	30394421	30394880	+	0	NA	Intergenic	Intergenic	49494	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
109511	chr19	838671	839100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2114	NM_002777	5657		NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
98170	chr17	46085071	46085230	+	0	NA	intron (NM_015443, intron 3 of 14).2	intron (NM_015443, intron 3 of 14).2	85900	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
119978	chr19	41902451	41903200	+	0	NA	exon (NM_199002, exon 18 of 29)	exon (NM_199002, exon 18 of 29)	18382	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
152837	chr22	21971301	21971500	+	0	NA	intron (NR_146277, intron 5 of 17)	intron (NR_146277, intron 5 of 17)	11387	NM_001349847	8940		NM_003935	ENSG00000100038	TOP3B	TOP3B1	DNA topoisomerase III beta	protein-coding
89244	chr16	88645501	88646000	+	0	NA	intron (NM_000101, intron 5 of 5)	MIRb|SINE|MIR	5303	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
171645	chr3	197627271	197628500	+	0	NA	promoter-TSS (NR_003266)	promoter-TSS (NR_003266)	-4	NR_003266	220729		NR_003266	ENSG00000291091	SDHAP4	-	SDHA pseudogene 4	pseudo
11987	chr1	94805721	94806230	+	0	NA	intron (NR_160783, intron 1 of 3)	intron (NR_160783, intron 1 of 3)	14257	NR_104131	101928079		NR_104131	ENSG00000293271	SLC44A3-AS1	LINC01057|XLOC_000303	SLC44A3 antisense RNA 1	ncRNA
178448	chr4	148046321	148046580	+	0	NA	intron (NM_024605, intron 19 of 22)	intron (NM_024605, intron 19 of 22)	263855	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
135217	chr2	159185351	159185850	+	0	NA	intron (NM_001350064, intron 14 of 26)	L2a|LINE|L2	-1235	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
205219	chr7	7964651	7965030	+	0	NA	intron (NR_110018, intron 1 of 4)	intron (NR_110018, intron 1 of 4)	3912	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
154335	chr22	32203201	32203680	+	0	NA	promoter-TSS (NM_001098527)	promoter-TSS (NM_001098527)	37	NM_001098527	10739		NM_006605	ENSG00000128253	RFPL2	RNF79	ret finger protein like 2	protein-coding
187004	chr5	139749001	139749600	+	0	NA	Intergenic	L2b|LINE|L2	-3077	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
162179	chr3	46994501	46994700	+	0	NA	intron (NM_001365116, intron 11 of 52)	intron (NM_001365116, intron 11 of 52)	6610	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
64303	chr14	23562701	23564100	+	0	NA	exon (NM_003917, exon 14 of 22)	exon (NM_003917, exon 14 of 22)	2303	NR_110555	102724814		NR_110555	ENSG00000258727	AP1G2-AS1	-	AP1G2 antisense RNA 1	ncRNA
222073	chr8	130328251	130328750	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-31967	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
29788	chr10	72278851	72279150	+	0	NA	Intergenic	MIRc|SINE|MIR	5076	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
234788	chrX	24009771	24010380	+	0	NA	intron (NM_030624, intron 2 of 3)	intron (NM_030624, intron 2 of 3)	17111	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
220375	chr8	100125901	100126130	+	0	NA	Intergenic	Intergenic	19802	NR_036491	286151		NM_001029860	ENSG00000156509	FBXO43	EMI2|ERP1|FBX43|OOMD12|OZEMA12|SPGF64	F-box protein 43	protein-coding
42821	chr11	72829071	72829430	+	0	NA	intron (NM_033388, intron 17 of 17)	MIRc|SINE|MIR	14839	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
1245	chr1	2289221	2289580	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	61081	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
95150	chr17	35080471	35081130	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	8426	NR_037713	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
23442	chr1	228446951	228447050	+	0	NA	Intergenic	Intergenic	10873	NM_033445	92815		NM_033445	ENSG00000181218	H2AC25	H2AW|HIST3H2A	H2A clustered histone 25	protein-coding
220840	chr8	102930051	102930150	+	0	NA	intron (NR_126339, intron 2 of 2)	LTR50|LTR|ERVL	65829	NR_126338	100506753		NR_126338		MAILR	AZIN1-AS1|H22954|MAIL1	macrophage interferon regulatory lncRNA	ncRNA
128995	chr2	64767621	64768730	+	0	NA	Intergenic	CpG	95456	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
187331	chr5	141647171	141647430	+	0	NA	intron (NM_033449, intron 9 of 19)	intron (NM_033449, intron 9 of 19)	4118	NM_033449	89848		NM_033449	ENSG00000197948	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
85681	chr16	56405801	56406380	+	0	NA	intron (NM_001144, intron 4 of 13)	G-rich|Low_complexity|Low_complexity	18899	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
81689	chr16	11225001	11227030	+	0	NA	Intergenic	Intergenic	30167	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
183853	chr5	87094371	87094530	+	0	NA	Intergenic	Intergenic	20504	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
119034	chr19	38947701	38948330	+	0	NA	intron (NR_104026, intron 3 of 5)	AluSz|SINE|Alu	4672	NM_148169	115290		NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
119301	chr19	39830951	39831330	+	0	NA	intron (NM_006484, intron 2 of 11)	intron (NM_006484, intron 2 of 11)	-1338	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
129354	chr2	68768651	68768980	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	-6095	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
145895	chr20	45959021	45959950	+	0	NA	intron (NM_022095, intron 14 of 27)	intron (NM_022095, intron 14 of 27)	12718	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
180567	chr5	14704521	14704980	+	0	NA	TTS (NM_054027)	TTS (NM_054027)	-7944	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
42128	chr11	67628171	67628330	+	0	NA	exon (NM_001243750, exon 4 of 4)	exon (NM_001243750, exon 4 of 4)	1687	NM_181843	254552		NM_181843	ENSG00000167799	NUDT8	-	nudix hydrolase 8	protein-coding
197524	chr6	76876451	76876630	+	0	NA	Intergenic	L1HS|LINE|L1	-282917	NR_149101	105377860		NR_149101	ENSG00000236635	LINC02540	-	long intergenic non-protein coding RNA 2540	ncRNA
152468	chr22	20710321	20710930	+	0	NA	intron (NM_001362863, intron 51 of 53)	intron (NM_001362863, intron 51 of 53)	9511	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
167077	chr3	126998221	126998680	+	0	NA	intron (NM_032242, intron 2 of 30)	intron (NM_032242, intron 2 of 30)	9856	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
66372	chr14	61476371	61477310	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	93354	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
124574	chr2	672471	672850	+	0	NA	intron (NM_001352680, intron 4 of 5)	intron (NM_001352680, intron 4 of 5)	4044	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
105083	chr17	82105151	82105450	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-7064	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
218927	chr8	60876571	60877230	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	33898	NR_168431	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
142798	chr20	13777151	13777630	+	0	NA	intron (NM_001276380, intron 2 of 13)	L2b|LINE|L2	7496	NM_016649	51575		NM_016649	ENSG00000089048	ESF1	ABTAP|C20orf6|HDCMC28P|bA526K24.1	ESF1 nucleolar pre-rRNA processing protein homolog	protein-coding
104485	chr17	81128001	81128400	+	0	NA	intron (NM_001080395, intron 4 of 13)	intron (NM_001080395, intron 4 of 13)	-2251	NR_029897	442906		NR_029897	ENSG00000283604	MIR338	MIRN338|hsa-mir-338|mir-338	microRNA 338	ncRNA
108008	chr18	58715501	58716450	+	0	NA	intron (NM_173844, intron 8 of 15)	intron (NM_173844, intron 8 of 15)	-44102	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
25227	chr10	5873101	5874100	+	0	NA	intron (NM_019046, intron 7 of 7)	intron (NM_019046, intron 7 of 7)	-15972	NM_001258452	84893		NM_032807	ENSG00000134452	FBH1	FBXO18|Fbx18|hFBH1	F-box DNA helicase 1	protein-coding
219237	chr8	66923251	66923950	+	0	NA	intron (NR_152600, intron 1 of 3)	intron (NR_152600, intron 1 of 3)	-1051	NR_002598	641648		NR_002598	ENSG00000254341	SNORD87	HBII-276|U87	small nucleolar RNA, C/D box 87	snoRNA
46818	chr11	130431101	130431580	+	0	NA	Intergenic	Intergenic	-2731	NM_007037	11095		NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif 8	protein-coding
93446	chr17	18672621	18673030	+	0	NA	exon (NM_001368135, exon 4 of 4)	exon (NM_001368135, exon 4 of 4)	9489	NM_001368135	2310		NM_001368134	ENSG00000240445	FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B	protein-coding
42783	chr11	72771421	72771680	+	0	NA	intron (NM_006645, intron 2 of 6)	intron (NM_006645, intron 2 of 6)	-11980	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
78314	chr15	90937121	90937380	+	0	NA	intron (NM_001323619, intron 5 of 20)	AluJr4|SINE|Alu	1965	NM_018671	55898		NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|OOHE|SMAP-1|SMAP1|UNC-45A	unc-45 myosin chaperone A	protein-coding
153151	chr22	23774651	23774750	+	0	NA	intron (NR_133013, intron 1 of 7).2	intron (NR_133013, intron 1 of 7).2	1851	NR_133013	4320		NM_005940	ENSG00000099953	MMP11	SL-3|ST3|STMY3	matrix metallopeptidase 11	protein-coding
66901	chr14	65229671	65230400	+	0	NA	Intergenic	Intergenic	-7688	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
8106	chr1	39189671	39190230	+	0	NA	intron (NM_012090, intron 1 of 92)	MIR3|SINE|MIR	105783	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
5142	chr1	24901171	24901930	+	0	NA	3' UTR (NM_004350, exon 5 of 5)	3' UTR (NM_004350, exon 5 of 5)	17866	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
31058	chr10	88986321	88987030	+	0	NA	intron (NM_001320855, intron 1 of 8)	intron (NM_001320855, intron 1 of 8)	-4123	NR_028035	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
211342	chr7	104944201	104944700	+	0	NA	Intergenic	Intergenic	-17805	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
235014	chrX	39936801	39937750	+	0	NA	Intergenic	Intergenic	99714	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
29123	chr10	68409821	68410280	+	0	NA	Intergenic	AluSg|SINE|Alu	-2756	NM_001278225	55680		NM_017987	ENSG00000204130	RUFY2	RABIP4R|ZFYVE13	RUN and FYVE domain containing 2	protein-coding
180710	chr5	24170151	24170250	+	0	NA	intron (NR_131245, intron 4 of 4)	G-rich|Low_complexity|Low_complexity	218852	NR_131245	439936		NR_131245	ENSG00000248874	LINC02899	C5orf17	long intergenic non-protein coding RNA 2899	ncRNA
30756	chr10	84257021	84257380	+	0	NA	intron (NM_001012722, intron 5 of 5)	intron (NM_001012722, intron 5 of 5)	12147	NM_001012720	5995		NM_002921	ENSG00000148604	RGR	RP44	retinal G protein coupled receptor	protein-coding
228145	chr9	96874371	96874530	+	0	NA	Intergenic	Intergenic	5550	NR_038890	100132781		NR_038890		LOC100132781	-	cyclin Y like 1 pseudogene	pseudo
17420	chr1	156651771	156652750	+	0	NA	exon (NM_021948, exon 8 of 14)	exon (NM_021948, exon 8 of 14)	10143	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
104618	chr17	81426001	81426750	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	24813	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
143150	chr20	23993551	23993850	+	0	NA	Intergenic	Intergenic	-4921	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
2672	chr1	10515721	10516480	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	41150	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
206631	chr7	35971321	35971950	+	0	NA	Intergenic	CpG	-123675	NR_108089	101928618		NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
72155	chr15	29103421	29104330	+	0	NA	intron (NM_001353793, intron 8 of 12).2	CpG	33217	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
46111	chr11	122879751	122880150	+	0	NA	Intergenic	LTR50|LTR|ERVL	-2578	NM_199124	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
13368	chr1	113901371	113902200	+	0	NA	TTS (NR_125965)	TTS (NR_125965)	-2834	NM_001319947	64858		NM_022836	ENSG00000118655	DCLRE1B	APOLLO|DKCB8|SNM1B|SNMIB	DNA cross-link repair 1B	protein-coding
96282	chr17	39920271	39921950	+	0	NA	TTS (NM_001320803)	TTS (NM_001320803)	-2460	NM_001165958	55876		NM_018530	ENSG00000073605	GSDMB	GSDMB-1|GSDML|PP4052|PRO2521	gasdermin B	protein-coding
41144	chr11	65590971	65591130	+	0	NA	intron (NM_001099409, intron 16 of 18)	AluSx|SINE|Alu	4750	NM_033347	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
130893	chr2	87429721	87430130	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-25502	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
172240	chr4	1348901	1349550	+	0	NA	intron (NM_001317935, intron 2 of 13)	MER58B|DNA|hAT-Charlie	1669	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
188217	chr5	150737571	150737750	+	0	NA	intron (NM_001135643, intron 4 of 13)	L1PB1|LINE|L1	20860	NM_001135644	51164		NM_016221	ENSG00000132912	DCTN4	DYN4|P62	dynactin subunit 4	protein-coding
36381	chr11	3984671	3985530	+	0	NA	intron (NM_001382568, intron 2 of 11)	intron (NM_001382568, intron 2 of 11)	-109585	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
54439	chr12	91777951	91778450	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	363513	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
30083	chr10	73894551	73895100	+	0	NA	Intergenic	Intergenic	-16307	NM_001145031	5328		NM_002658	ENSG00000122861	PLAU	ATF|BDPLT5|QPD|UPA|URK|u-PA	plasminogen activator, urokinase	protein-coding
12692	chr1	109481601	109482000	+	0	NA	3' UTR (NM_001040709, exon 6 of 6)	3' UTR (NM_001040709, exon 6 of 6)	-2105	NM_153340	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
126828	chr2	30708751	30709130	+	0	NA	Intergenic	MIRb|SINE|MIR	98506	NM_144575	92291		NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
46450	chr11	128149371	128149530	+	0	NA	Intergenic	Intergenic	-59316	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
147598	chr20	62030771	62031580	+	0	NA	intron (NM_003185, intron 1 of 14)	intron (NM_003185, intron 1 of 14)	-33627	NR_130463	100422838		NR_130463	ENSG00000265306	MIR3195	-	microRNA 3195	ncRNA
224526	chr9	19174001	19174600	+	0	NA	Intergenic	Intergenic	-46694	NR_038064	123		NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
207018	chr7	38371001	38371200	+	0	NA	intron (NR_040085, intron 3 of 3)	MLT1H|LTR|ERVL-MaLR	29523	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
90906	chr17	2507301	2507500	+	0	NA	intron (NM_024086, intron 1 of 9)	SVA_D|Retroposon|SVA	4488	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
159672	chr3	15399721	15400750	+	0	NA	Intergenic	LTR49|LTR|ERV1	27309	NM_152396	131965		NM_152396	ENSG00000206562	METTL6	hMETTL6	methyltransferase 6, tRNA N3-cytidine	protein-coding
181287	chr5	39545051	39545150	+	0	NA	Intergenic	Intergenic	24669	NR_104632	101926940		NR_104632	ENSG00000271334	LINC02104	-	long intergenic non-protein coding RNA 2104	ncRNA
42056	chr11	67467221	67468030	+	0	NA	intron (NM_025124, intron 2 of 6)	intron (NM_025124, intron 2 of 6)	1626	NR_073410	80194		NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding
86235	chr16	58128761	58130200	+	0	NA	promoter-TSS (NM_013242)	promoter-TSS (NM_013242)	-55	NR_136632	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
107970	chr18	58535471	58535630	+	0	NA	exon (NM_052947, exon 5 of 13)	exon (NM_052947, exon 5 of 13)	-65070	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
222346	chr8	133547971	133548500	+	0	NA	intron (NM_173344, intron 1 of 9)	L2b|LINE|L2	23652	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
24002	chr1	235246621	235246880	+	0	NA	intron (NM_016374, intron 6 of 23)	intron (NM_016374, intron 6 of 23)	-56634	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
106265	chr18	12391651	12391970	+	0	NA	Intergenic	Intergenic	-14583	NM_006796	10939		NM_006796	ENSG00000141385	AFG3L2	OPA12|SCA28|SPAX5	AFG3 like matrix AAA peptidase subunit 2	protein-coding
168521	chr3	143962871	143963030	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-8848	NM_001363944	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
139085	chr2	218874771	218875650	+	0	NA	TTS (NM_006522)	TTS (NM_006522)	-5642	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
28915	chr10	63164171	63164850	+	0	NA	Intergenic	Intergenic	31182	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
93628	chr17	19164571	19165050	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-2186	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
204393	chr7	3037251	3037550	+	0	NA	intron (NM_001324281, intron 1 of 25)	intron (NM_001324281, intron 1 of 25)	6467	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
187496	chr5	142323001	142323200	+	0	NA	intron (NM_030964, intron 1 of 2)	intron (NM_030964, intron 1 of 2)	1147	NM_001293289	81848		NM_030964	ENSG00000187678	SPRY4	HH17	sprouty RTK signaling antagonist 4	protein-coding
30276	chr10	75165901	75167430	+	0	NA	intron (NM_144660, intron 3 of 4)	intron (NM_144660, intron 3 of 4)	-43489	NM_001324087	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
192623	chr6	26103621	26105050	+	0	NA	TTS (NM_003542)	TTS (NM_003542)	402	NM_003542	8364		NM_003542	ENSG00000197061	H4C3	H4-16|H4/g|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C4|H4C5|H4C6|H4C8|H4C9|H4FG|HIST1H4C|TEBIVANED1|TEVANED1|dJ221C16.1	H4 clustered histone 3	protein-coding
55583	chr12	106356271	106356630	+	0	NA	Intergenic	AluYb8|SINE|Alu	-1298	NM_018082	55703		NM_018082	ENSG00000013503	POLR3B	C128|CMT1I|HLD8|INMAP|RPC2	RNA polymerase III subunit B	protein-coding
215152	chr7	155482571	155483230	+	0	NA	Intergenic	Intergenic	24771	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
27483	chr10	32054201	32054750	+	0	NA	intron (NM_004521, intron 1 of 25)	intron (NM_004521, intron 1 of 25)	1950	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
19180	chr1	172002771	172003050	+	0	NA	intron (NM_001350204, intron 4 of 20)	intron (NM_001350204, intron 4 of 20)	-135898	NR_036066	100422882		NR_036066	ENSG00000283152	MIR3120	mir-3120	microRNA 3120	ncRNA
26286	chr10	14905471	14906080	+	0	NA	non-coding (NR_110297, exon 17 of 17)	non-coding (NR_110297, exon 17 of 17)	26875	NM_024670	79723		NM_024670	ENSG00000152455	SUV39H2	KMT1B	SUV39H2 histone lysine methyltransferase	protein-coding
191908	chr6	15422171	15422850	+	0	NA	intron (NM_001267040, intron 3 of 17)	intron (NM_001267040, intron 3 of 17)	173655	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
187837	chr5	146912101	146912350	+	0	NA	intron (NM_001271900, intron 2 of 10)	AluSx|SINE|Alu	7281	NR_047115	100874361		NR_047115	ENSG00000249553	PPP2R2B-IT1	-	PPP2R2B intronic transcript 1	ncRNA
34983	chr11	512451	512550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5258	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
74740	chr15	63204771	63205150	+	0	NA	intron (NM_016530, intron 1 of 7)	AluJo|SINE|Alu	15354	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
203625	chr7	958101	958500	+	0	NA	Intergenic	Intergenic	-2893	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
61264	chr13	50075601	50076230	+	0	NA	intron (NR_152566, intron 1 of 13)	intron (NR_152566, intron 1 of 13)	6126	NR_152568	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
176911	chr4	102806951	102807450	+	0	NA	intron (NM_003340, intron 4 of 7)	intron (NM_003340, intron 4 of 7)	18660	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
119807	chr19	41338951	41339850	+	0	NA	intron (NM_000660, intron 5 of 6)	AluJb|SINE|Alu	14522	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
192724	chr6	26360501	26361580	+	0	NA	Intergenic	Intergenic	-4119	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
87604	chr16	74329221	74329700	+	0	NA	Intergenic	Intergenic	32646	NM_002811	5713		NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	proteasome 26S subunit, non-ATPase 7	protein-coding
26073	chr10	13098771	13101050	+	0	NA	promoter-TSS (NM_001008213)	promoter-TSS (NM_001008213)	79	NM_001282658	83643		NM_031455	ENSG00000151468	CCDC3	-	coiled-coil domain containing 3	protein-coding
94006	chr17	25074451	25074560	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2014736	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
195913	chr6	41739621	41739880	+	0	NA	intron (NM_002630, intron 7 of 8)	intron (NM_002630, intron 7 of 8)	-3527	NM_001167827	7942		NM_007162	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
132118	chr2	101561071	101561230	+	0	NA	Intergenic	MIRb|SINE|MIR	-86038	NM_001367509	731220		NM_207403	ENSG00000196460	RFX8	-	regulatory factor X8	protein-coding
75322	chr15	65307301	65307500	+	0	NA	Intergenic	AluSg|SINE|Alu	2723	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
20902	chr1	202162801	202163650	+	0	NA	Intergenic	Intergenic	-1637	NR_037664	5778		NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase non-receptor type 7	protein-coding
191658	chr6	13426151	13426650	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	-18263	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
198455	chr6	106140851	106140950	+	0	NA	Intergenic	Intergenic	41959	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
32522	chr10	102834951	102835330	+	0	NA	intron (NM_000102, intron 2 of 7)	intron (NM_000102, intron 2 of 7)	2273	NM_000102	1586		NM_000102	ENSG00000148795	CYP17A1	CPT7|CYP17|P450C17|S17AH	cytochrome P450 family 17 subfamily A member 1	protein-coding
13677	chr1	116574351	116575230	+	0	NA	3' UTR (NM_001542, exon 12 of 12)	3' UTR (NM_001542, exon 12 of 12)	-3697	NM_001144822	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
95411	chr17	36074501	36074700	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	10328	NM_002988	6362		NM_002988	ENSG00000275385	CCL18	AMAC-1|AMAC1|CKb7|DC-CK1|DCCK1|MIP-4|PARC|SCYA18	C-C motif chemokine ligand 18	protein-coding
91419	chr17	4713501	4714250	+	0	NA	intron (NR_047516, intron 1 of 13)	AluSx|SINE|Alu	3243	NM_199004	409		NM_004313	ENSG00000141480	ARRB2	ARB2|ARR2|BARR2	arrestin beta 2	protein-coding
195282	chr6	36509921	36510750	+	0	NA	intron (NM_007271, intron 7 of 13)	MER52A|LTR|ERV1	37144	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
20371	chr1	197930801	197931030	+	0	NA	TTS (NM_001014434)	TTS (NM_001014434)	13543	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
31126	chr10	89411971	89412830	+	0	NA	Intergenic	LTR12|LTR|ERV1	-2168	NM_012420	24138		NM_012420	ENSG00000152778	IFIT5	ISG58|P58|RI58	interferon induced protein with tetratricopeptide repeats 5	protein-coding
167226	chr3	128468721	128468980	+	0	NA	intron (NR_037890, intron 2 of 2)	MIR|SINE|MIR	-1602	NM_153330	165721		NM_153330	ENSG00000179407	DNAJB8	CT156|DJ6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding
138872	chr2	216885601	216885800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	14928	NR_130782	101928327		NR_130782		TESHL	LINC01921	testicular germ cell expressed HSF2 interacting lncRNA	ncRNA
163708	chr3	52281251	52281350	+	0	NA	Intergenic	L1ME4a|LINE|L1	-2651	NM_025222	80335		NM_025222	ENSG00000164091	WDR82	MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A	WD repeat domain 82	protein-coding
148261	chr20	63678421	63678680	+	0	NA	intron (NM_032957, intron 12 of 34)	intron (NM_032957, intron 12 of 34)	-18102	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
234294	chrX	13688571	13689880	+	0	NA	promoter-TSS (NM_004251)	promoter-TSS (NM_004251)	97	NM_004251	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
191371	chr6	7314951	7315050	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-1801	NM_001292008	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
165032	chr3	71415171	71416300	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-110964	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
60802	chr13	45331851	45332350	+	0	NA	Intergenic	Intergenic	4347	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
177120	chr4	108100451	108100950	+	0	NA	intron (NM_016269, intron 3 of 11)	MER63A|DNA|hAT-Blackjack	66097	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
119586	chr19	40712671	40712830	+	0	NA	intron (NM_001142555, intron 4 of 13)	MER112|DNA|hAT-Charlie	2369	NM_001142555	79934		NM_024876	ENSG00000123815	COQ8B	ADCK4|NPHS9	coenzyme Q8B	protein-coding
3000	chr1	12049551	12050580	+	0	NA	Intergenic	Intergenic	-13238	NM_001243	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
142330	chr20	3675021	3675280	+	0	NA	intron (NM_025220, intron 3 of 21)	intron (NM_025220, intron 3 of 21)	6860	NM_001282447	80332		NM_025220	ENSG00000149451	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
225471	chr9	35607051	35607150	+	0	NA	promoter-TSS (NR_039813)	promoter-TSS (NR_039813)	-994	NR_039813	100616214		NR_039813	ENSG00000263892	MIR4667	mir-4667	microRNA 4667	ncRNA
193897	chr6	31616971	31617400	+	0	NA	TTS (NM_001623).6	TTS (NM_001623).6	1194	NM_032955	199		NM_001623	ENSG00000204472	AIF1	AIF-1|IBA1|IRT-1|IRT1	allograft inflammatory factor 1	protein-coding
152331	chr22	20419421	20420030	+	0	NA	Intergenic	Intergenic	18100	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
83979	chr16	29290701	29291750	+	0	NA	Intergenic	Intergenic	-11062	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
13924	chr1	120122101	120122530	+	0	NA	Intergenic	Intergenic	-52612	NM_001200001	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
90337	chr17	1179071	1180520	+	0	NA	5' UTR (NM_021962, exon 1 of 23).2	5' UTR (NM_021962, exon 1 of 23).2	186	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
231463	chr9	131288901	131289100	+	0	NA	promoter-TSS (NM_032728)	promoter-TSS (NM_032728)	-723	NM_032728	84814		NM_032728	ENSG00000160539	PLPP7	C9orf67|NET39|PPAPDC3	phospholipid phosphatase 7 (inactive)	protein-coding
104992	chr17	82012901	82013100	+	0	NA	intron (NR_045351, intron 11 of 14)	intron (NR_045351, intron 11 of 14)	9878	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
152004	chr22	19217771	19218380	+	0	NA	intron (NM_001835, intron 18 of 31)	intron (NM_001835, intron 18 of 31)	-39212	NR_046298	6576		NM_005984	ENSG00000100075	SLC25A1	CIC|CMS23|CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
188030	chr5	149652971	149653530	+	0	NA	Intergenic	Intergenic	71752	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
5550	chr1	25876971	25877580	+	0	NA	Intergenic	MIRb|SINE|MIR	-1567	NM_178422	164091		NM_178422	ENSG00000182749	PAQR7	MPRA|PGLP|mSR	progestin and adipoQ receptor family member 7	protein-coding
158260	chr22	50315951	50316350	+	0	NA	intron (NM_001001794, intron 7 of 19)	intron (NM_001001794, intron 7 of 19)	-8504	NM_001376869	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
15445	chr1	150307271	150307430	+	0	NA	intron (NM_031901, intron 2 of 2)	AluJb|SINE|Alu	13489	NM_031901	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
219169	chr8	66513651	66514350	+	0	NA	intron (NM_152765, intron 5 of 5)	intron (NM_152765, intron 5 of 5)	20434	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
108464	chr18	70598971	70599530	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	51704	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
121412	chr19	46979721	46979980	+	0	NA	intron (NM_004491, intron 3 of 6)	intron (NM_004491, intron 3 of 6)	-39987	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
2740	chr1	10669401	10669900	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	126996	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
204142	chr7	2376601	2377000	+	0	NA	intron (NM_001362791, intron 14 of 18)	intron (NM_001362791, intron 14 of 18)	21973	NM_001362791	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
216184	chr8	11807251	11807530	+	0	NA	promoter-TSS (NM_001287749).2	promoter-TSS (NM_001287749).2	-553	NM_001287749	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
53221	chr12	62285471	62285830	+	0	NA	intron (NM_001351164, intron 1 of 21)	L1PB4|LINE|L1	25246	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
209206	chr7	75431451	75432150	+	0	NA	intron (NM_001099415, intron 7 of 14)	AluSz|SINE|Alu	21478	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
235881	chrX	51892851	51893600	+	0	NA	promoter-TSS (NM_001005333)	promoter-TSS (NM_001005333)	-398	NM_001005333	9500		NM_006986	ENSG00000179222	MAGED1	DLXIN-1|NRAGE	MAGE family member D1	protein-coding
145722	chr20	45043871	45044630	+	0	NA	intron (NM_006282, intron 10 of 10)	intron (NM_006282, intron 10 of 10)	56877	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
9427	chr1	48382521	48383130	+	0	NA	intron (NM_001286238, intron 9 of 12)	SVA_E|Retroposon|SVA	89379	NM_001286238	54558		NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
193436	chr6	30480171	30481530	+	0	NA	Intergenic	L2a|LINE|L2	-8659	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
3490	chr1	16022151	16022450	+	0	NA	intron (NM_004070, intron 1 of 19)	intron (NM_004070, intron 1 of 19)	264	NM_001257139	1187		NM_004070	ENSG00000186510	CLCNKA	CLCK1|ClC-K1|hClC-Ka	chloride voltage-gated channel Ka	protein-coding
80640	chr16	2992501	2993030	+	0	NA	non-coding (NR_033861, exon 5 of 5)	non-coding (NR_033861, exon 5 of 5)	3711	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
147566	chr20	60266051	60266400	+	0	NA	intron (NR_046099, intron 3 of 4)	intron (NR_046099, intron 3 of 4)	-42249	NR_030376	693231		NR_030376	ENSG00000207802	MIR646	MIRN646|hsa-mir-646	microRNA 646	ncRNA
142284	chr20	3222851	3223550	+	0	NA	intron (NR_052000, intron 6 of 6)	intron (NR_052000, intron 6 of 6)	13702	NM_181493	3704		NM_033453	ENSG00000125877	ITPA	C20orf37|DEE35|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3	inosine triphosphatase	protein-coding
7514	chr1	33472121	33473100	+	0	NA	promoter-TSS (NM_001377378)	promoter-TSS (NM_001377378)	-35	NM_001377378	7579		NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
68815	chr14	91258521	91258780	+	0	NA	Intergenic	MIR|SINE|MIR	-4770	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
144519	chr20	35702751	35703600	+	0	NA	non-coding (NR_040724, exon 18 of 18)	non-coding (NR_040724, exon 18 of 18)	3770	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
172573	chr4	2444171	2444330	+	0	NA	intron (NM_001193282, intron 5 of 15)	intron (NM_001193282, intron 5 of 15)	-24856	NM_002938	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
16700	chr1	155214851	155215350	+	0	NA	non-coding (NR_002188, exon 11 of 13)	non-coding (NR_002188, exon 11 of 13)	6401	NM_002455	4580		NM_002455	ENSG00000173171	MTX1	MTX|MTXN	metaxin 1	protein-coding
39842	chr11	62340001	62340480	+	0	NA	intron (NM_001083926, intron 2 of 6)	AluJb|SINE|Alu	2792	NM_001083926	80150		NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase and isoaspartyl peptidase 1	protein-coding
134097	chr2	131830401	131830900	+	0	NA	Intergenic	CpG	-28989	NR_161366	408029		NR_161366	ENSG00000290618	CDRT15P3	C2orf27B	CDRT15 pseudogene 3	ncRNA
204099	chr7	2119721	2121200	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-31408	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
213173	chr7	132434301	132434500	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	142070	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
102481	chr17	75739701	75739900	+	0	NA	intron (NM_001005619, intron 18 of 38)	intron (NM_001005619, intron 18 of 38)	15104	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
128482	chr2	58048271	58049030	+	0	NA	intron (NM_006296, intron 1 of 12)	intron (NM_006296, intron 1 of 12)	1844	NM_006296	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
35613	chr11	1767951	1768250	+	0	NA	Intergenic	Intergenic	-4173	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
162146	chr3	46962571	46963230	+	0	NA	intron (NM_144716, intron 2 of 7)	L1ME3A|LINE|L1	13601	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
174277	chr4	38243221	38243880	+	0	NA	Intergenic	Intergenic	-123364	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
233121	chr9	137140371	137140730	+	0	NA	intron (NM_007327, intron 1 of 19)	intron (NM_007327, intron 1 of 19)	1396	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
187468	chr5	142134801	142135200	+	0	NA	intron (NM_030571, intron 3 of 7)	AluY|SINE|Alu	26221	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
125255	chr2	10428051	10428550	+	0	NA	TTS (NM_001258357)	TTS (NM_001258357)	18549	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
28727	chr10	61932051	61932550	+	0	NA	intron (NM_032199, intron 2 of 9)	Tigger1|DNA|TcMar-Tigger	30601	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
6904	chr1	31616951	31617050	+	0	NA	promoter-TSS (NM_001525)	promoter-TSS (NM_001525)	-689	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
196254	chr6	42910951	42911250	+	0	NA	Intergenic	Intergenic	-4889	NM_001243169	171558		NM_138296	ENSG00000171611	PTCRA	PT-ALPHA|PTA	pre T cell antigen receptor alpha	protein-coding
63134	chr13	113458451	113458550	+	0	NA	intron (NM_001014283, intron 6 of 6)	intron (NM_001014283, intron 6 of 6)	-5012	NM_138430	113622		NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
206271	chr7	29589151	29589400	+	0	NA	Intergenic	Intergenic	23742	NM_001329997	222171		NM_175887	ENSG00000176532	PRR15	-	proline rich 15	protein-coding
48753	chr12	10960051	10961030	+	0	NA	intron (NM_001316893, intron 4 of 4).3	ERVL-B4-int|LTR|ERVL	-21333	NM_023922	50840		NM_023922	ENSG00000212127	TAS2R14	T2R14|TRB1	taste 2 receptor member 14	protein-coding
217479	chr8	28888971	28891680	+	0	NA	promoter-TSS (NM_001145159)	promoter-TSS (NM_001145159)	-70	NM_001324389	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
37739	chr11	31810021	31810530	+	0	NA	promoter-TSS (NM_001368889)	promoter-TSS (NM_001368889)	-316	NM_001368889	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
116349	chr19	17863871	17864030	+	0	NA	TTS (NM_000980)	TTS (NM_000980)	1362	NR_000012	26780		NR_000012	ENSG00000207166	SNORA68	RNU68|SNORA68A|U68	small nucleolar RNA, H/ACA box 68	snoRNA
8755	chr1	42709871	42710030	+	0	NA	Intergenic	L1MA4A|LINE|L1	26814	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
236758	chrX	78653121	78653500	+	0	NA	Intergenic	Intergenic	6018	NM_152694	203430		NM_152694	ENSG00000179300	RTL3	Mar3|Mart3|SIRH9|ZCCHC5|ZHC5	retrotransposon Gag like 3	protein-coding
133211	chr2	113170901	113172030	+	0	NA	Intergenic	LTR47A|LTR|ERVL	-2506	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
31145	chr10	89860601	89861230	+	0	NA	intron (NR_149080, intron 1 of 1)	intron (NR_149080, intron 1 of 1)	7009	NR_149080	105378425		NR_149079	ENSG00000280560	LINC01374	TCONS_00018278	long intergenic non-protein coding RNA 1374	ncRNA
72048	chr15	28739921	28740180	+	0	NA	intron (NR_026589, intron 1 of 8)	intron (NR_026589, intron 1 of 8)	2467	NR_026589	440253		NR_026589		WHAMMP2	WHAMML2|WHDC1L2	WHAMM pseudogene 2	pseudo
141840	chr20	460471	460630	+	0	NA	intron (NR_111901, intron 1 of 9)	intron (NR_111901, intron 1 of 9)	1983	NR_111901	128637		NM_144628	ENSG00000125875	TBC1D20	C20orf140|WARBM4	TBC1 domain family member 20	protein-coding
184874	chr5	112529601	112529800	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	-98736	NR_104672	102467214		NR_104672	ENSG00000250358	LINC02200	-	long intergenic non-protein coding RNA 2200	ncRNA
29167	chr10	68792171	68792330	+	0	NA	non-coding (NR_104262, exon 24 of 24)	non-coding (NR_104262, exon 24 of 24)	-35281	NM_152709	219736		NM_152709	ENSG00000165730	STOX1	C10orf24	storkhead box 1	protein-coding
237148	chrX	107205821	107207100	+	0	NA	promoter-TSS (NM_017681)	promoter-TSS (NM_017681)	-27	NM_017681	54830		NM_017681	ENSG00000198088	NUP62CL	-	nucleoporin 62 C-terminal like	protein-coding
198265	chr6	99567951	99569830	+	0	NA	promoter-TSS (NM_005190)	promoter-TSS (NM_005190)	-76	NM_001013399	892		NM_005190	ENSG00000112237	CCNC	CycC|SRB11|hSRB11	cyclin C	protein-coding
141375	chr2	240695101	240695300	+	0	NA	intron (NM_198998, intron 3 of 3)	intron (NM_198998, intron 3 of 3)	3334	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
50348	chr12	47165151	47165250	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	-22612	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
78185	chr15	90558221	90558730	+	0	NA	intron (NM_001042574, intron 2 of 14)	L2a|LINE|L2	28552	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
151841	chr22	18531201	18531400	+	0	NA	TTS (NM_001242313)	TTS (NM_001242313)	3498	NM_001242313	728229		NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
41950	chr11	67314651	67314750	+	0	NA	Intergenic	AluJb|SINE|Alu	-3139	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
58715	chr12	132573851	132574150	+	0	NA	intron (NM_001142641, intron 11 of 16)	intron (NM_001142641, intron 11 of 16)	-7997	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
4539	chr1	21958251	21958550	+	0	NA	Intergenic	Intergenic	-18622	NM_007352	23436		NM_007352	ENSG00000219073	CELA3B	CBPP|ELA3B	chymotrypsin like elastase 3B	protein-coding
37568	chr11	18822821	18822900	+	0	NA	Intergenic	AluSq2|SINE|Alu	-30139	NM_001278236	84867		NM_006906	ENSG00000110786	PTPN5	PTPSTEP|STEP|STEP61	protein tyrosine phosphatase non-receptor type 5	protein-coding
22340	chr1	214427001	214427200	+	0	NA	intron (NM_005401, intron 3 of 18)	AluSc5|SINE|Alu	124502	NM_005401	5784		NM_005401	ENSG00000152104	PTPN14	CATLPH|PEZ|PTP36|PTPD2	protein tyrosine phosphatase non-receptor type 14	protein-coding
147344	chr20	58234871	58235280	+	0	NA	intron (NR_003505, intron 16 of 16)	MIR3|SINE|MIR	-6422	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
219677	chr8	80515121	80515550	+	0	NA	intron (NM_023929, intron 3 of 6)	intron (NM_023929, intron 3 of 6)	29109	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
58674	chr12	132539151	132539450	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	33894	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
25263	chr10	6086101	6087230	+	0	NA	Intergenic	Intergenic	-2369	NM_032905	84991		NM_032905	ENSG00000134453	RBM17	SPF45	RNA binding motif protein 17	protein-coding
122737	chr19	50053071	50053230	+	0	NA	intron (NR_138096, intron 1 of 4)	intron (NR_138096, intron 1 of 4)	2561	NR_138096	400710		NR_027257	ENSG00000204666	ZNF473CR	-	ZNF473 cis regulating lncRNA	ncRNA
1848	chr1	6343271	6343830	+	0	NA	intron (NM_007274, intron 2 of 8)	intron (NM_007274, intron 2 of 8)	15379	NM_181866	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
189178	chr5	171409001	171410500	+	0	NA	intron (NM_002520, intron 10 of 10)	AluSx|SINE|Alu	-9897	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
56566	chr12	117098901	117100280	+	0	NA	promoter-TSS (NM_001168325)	promoter-TSS (NM_001168325)	123	NR_120464	101928244		NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
96919	chr17	42150271	42150580	+	0	NA	intron (NM_201434, intron 1 of 6)	AluSq2|SINE|Alu	4564	NM_201434	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
207850	chr7	50353521	50354630	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	35027	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
102048	chr17	74869221	74869730	+	0	NA	promoter-TSS (NM_001258016)	promoter-TSS (NM_001258016)	-722	NM_001258016	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
164807	chr3	70811951	70812050	+	0	NA	Intergenic	Intergenic	252924	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
36531	chr11	6497371	6497530	+	0	NA	intron (NM_144666, intron 1 of 42)	intron (NM_144666, intron 1 of 42)	170	NM_173589	144132		NM_144666	ENSG00000179532	DNHD1	C11orf47|CCDC35|DHCD1|DNHD1L|SPGF65	dynein heavy chain domain 1	protein-coding
124369	chr19	58360651	58361130	+	0	NA	intron (NM_198458, intron 1 of 2)	AluY|SINE|Alu	-1736	NR_136527	105372483		NR_136527		ZNF497-AS1	-	ZNF497 antisense RNA 1	ncRNA
63076	chr13	113174401	113174800	+	0	NA	Intergenic	AluJo|SINE|Alu	15946	NM_001256134	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
106455	chr18	13730151	13730930	+	0	NA	intron (NM_001378134, intron 1 of 10)	MER119|DNA|hAT-Charlie	3867	NM_001378134	8731		NM_003799	ENSG00000101654	RNMT	CMT1|CMT1c|MET|Met|N7-MTase|RG7MT1|cm1p|hCMT1|hMet	RNA guanine-7 methyltransferase	protein-coding
127316	chr2	38805921	38806280	+	0	NA	intron (NM_198963, intron 22 of 23)	L2|LINE|L2	27890	NM_024775	79833		NM_024775	ENSG00000152147	GEMIN6	-	gem nuclear organelle associated protein 6	protein-coding
181143	chr5	38441621	38442000	+	0	NA	intron (NM_182798, intron 12 of 16)	intron (NM_182798, intron 12 of 16)	-3736	NM_182801	133584		NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
155157	chr22	37675971	37676400	+	0	NA	intron (NM_002305, intron 1 of 3)	intron (NM_002305, intron 1 of 3)	549	NM_002305	3956		NM_002305	ENSG00000100097	LGALS1	GAL1|GBP	galectin 1	protein-coding
55333	chr12	103950221	103950480	+	0	NA	3' UTR (NM_001135570, exon 3 of 3)	3' UTR (NM_001135570, exon 3 of 3)	6865	NM_001135570	728568		NM_001135570	ENSG00000204954	UQCC6	BR|BRAWNIN|C12orf73	ubiquinol-cytochrome c reductase complex assembly factor 6	protein-coding
81257	chr16	4615731	4617130	+	0	NA	Intergenic	CpG-9218	-1542	NM_001330467	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
13789	chr1	117365171	117365330	+	0	NA	Intergenic	Intergenic	-2199	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
120867	chr19	45534351	45535050	+	0	NA	intron (NM_001017989, intron 1 of 1)	AluSg|SINE|Alu	27221	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
65670	chr14	52550521	52551000	+	0	NA	intron (NM_020784, intron 1 of 20)	intron (NM_020784, intron 1 of 20)	1745	NM_020784	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
2464	chr1	9649801	9650200	+	0	NA	Intergenic	MER34C2|LTR|ERV1	-1731	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
97398	chr17	43371371	43371730	+	0	NA	intron (NR_027412, intron 4 of 5)	L2|LINE|L2	17348	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
137998	chr2	201255821	201256480	+	0	NA	intron (NM_033355, intron 2 of 9)	intron (NM_033355, intron 2 of 9)	-1885	NM_001080125	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
160309	chr3	27479721	27480880	+	0	NA	intron (NR_135544, intron 1 of 24)	AluJb|SINE|Alu	4084	NR_135543	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
222105	chr8	131771351	131771450	+	0	NA	Intergenic	L1PA2|LINE|L1	-132693	NM_001323553	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
194798	chr6	34232871	34234100	+	0	NA	Intergenic	L1ME3A|LINE|L1	-3388	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
170707	chr3	187958351	187959050	+	0	NA	TTS (NR_135538)	TTS (NR_135538)	17707	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
50702	chr12	48924271	48925100	+	0	NA	intron (NM_016594, intron 2 of 5)	intron (NM_016594, intron 2 of 5)	303	NM_001143781	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
82520	chr16	17592041	17592450	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-121285	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
138353	chr2	203933601	203934360	+	0	NA	Intergenic	Intergenic	-2783	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123553	chr19	54390851	54391400	+	0	NA	Intergenic	Intergenic	-20569	NM_001289026	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
63283	chr13	113969451	113969630	+	0	NA	intron (NM_001365455, intron 2 of 6)	intron (NM_001365455, intron 2 of 6)	4536	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
201354	chr6	144657171	144657550	+	0	NA	intron (NM_001375323, intron 1 of 24)	intron (NM_001375323, intron 1 of 24)	74212	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
73087	chr15	40936001	40936200	+	0	NA	intron (NM_019074, intron 8 of 10)	intron (NM_019074, intron 8 of 10)	6760	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
65521	chr14	51907971	51908880	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	10146	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
61529	chr13	60134421	60134680	+	0	NA	intron (NM_001042517, intron 1 of 27)	intron (NM_001042517, intron 1 of 27)	-10148	NR_046540	100874196		NR_046540		DIAPH3-AS2	DIPAH3-AS2	DIAPH3 antisense RNA 2	ncRNA
187258	chr5	141484721	141485330	+	0	NA	promoter-TSS (NM_018928)	promoter-TSS (NM_018928)	-149	NM_032406	56098		NM_018928	ENSG00000242419	PCDHGC4	NEDGS|PCDH-GAMMA-C4	protocadherin gamma subfamily C, 4	protein-coding
111425	chr19	3785511	3787280	+	0	NA	promoter-TSS (NM_139354)	promoter-TSS (NM_139354)	-14	NM_139354	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
68650	chr14	89957521	89957780	+	0	NA	intron (NM_018319, intron 2 of 16)	intron (NM_018319, intron 2 of 16)	1723	NM_001008744	55775		NM_018319	ENSG00000042088	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
118628	chr19	37217451	37218980	+	0	NA	promoter-TSS (NM_001345947)	promoter-TSS (NM_001345947)	1	NM_001345948	163087		NM_152604	ENSG00000188283	ZNF383	HSD17|Zfp383	zinc finger protein 383	protein-coding
124063	chr19	55598571	55601480	+	0	NA	promoter-TSS (NM_032836)	promoter-TSS (NM_032836)	-263	NM_153219	147807		NM_153219	ENSG00000171443	ZNF524	-	zinc finger protein 524	protein-coding
101702	chr17	68494671	68494830	+	0	NA	intron (NM_001278433, intron 1 of 10)	MLT1H1|LTR|ERVL-MaLR	-17030	NM_212471	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
167610	chr3	129574401	129575030	+	0	NA	intron (NM_015103, intron 11 of 35)	MIRb|SINE|MIR	26330	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
196464	chr6	43520071	43520650	+	0	NA	exon (NM_001318876, exon 6 of 9)	exon (NM_001318876, exon 6 of 9)	3271	NM_203290	9533		NM_004875	ENSG00000171453	POLR1C	AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3	RNA polymerase I and III subunit C	protein-coding
125465	chr2	12296001	12296200	+	0	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	96970	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
232228	chr9	134377871	134378830	+	0	NA	promoter-TSS (NM_001291920)	promoter-TSS (NM_001291920)	-945	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
233381	chr9	137518051	137518750	+	0	NA	intron (NM_001098537, intron 11 of 34)	intron (NM_001098537, intron 11 of 34)	32002	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
228581	chr9	104763371	104764460	+	0	NA	promoter-TSS (NR_130759)	promoter-TSS (NR_130759)	-214	NR_130759	55335		NM_018376	ENSG00000165028	NIPSNAP3B	FP944|NIPSNAP3|SNAP1	nipsnap homolog 3B	protein-coding
202582	chr6	158693351	158693650	+	0	NA	intron (NM_001318745, intron 3 of 14)	AluSz|SINE|Alu	30097	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
82671	chr16	19689571	19689930	+	0	NA	intron (NR_158160, intron 26 of 28)	MER44D|DNA|TcMar-Tigger	-26706	NR_130967	124152		NM_153208	ENSG00000174628	IQCK	-	IQ motif containing K	protein-coding
14166	chr1	121377001	121377200	+	0	NA	intron (NM_001271872, intron 7 of 9)	intron (NM_001271872, intron 7 of 9)	20805	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
77259	chr15	81321421	81321680	+	0	NA	intron (NR_135013, intron 2 of 4)	AluSc|SINE|Alu	2591	NR_135013	80765		NM_030574	ENSG00000172345	STARD5	-	StAR related lipid transfer domain containing 5	protein-coding
137966	chr2	201185001	201185430	+	0	NA	intron (NM_001230, intron 1 of 7)	AluJb|SINE|Alu	2074	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
175946	chr4	80540751	80541130	+	0	NA	intron (NM_001206997, intron 2 of 6)	intron (NM_001206997, intron 2 of 6)	205210	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
181392	chr5	40680601	40681400	+	0	NA	exon (NM_000958, exon 2 of 3)	exon (NM_000958, exon 2 of 3)	1085	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
216324	chr8	12840501	12840980	+	0	NA	Intergenic	Intergenic	-29262	NR_015383	340357		NR_015383	ENSG00000254813	LINC03019	-	long intergenic non-protein coding RNA 3019	ncRNA
164586	chr3	66038621	66038900	+	0	NA	5' UTR (NM_004742, exon 1 of 23)	5' UTR (NM_004742, exon 1 of 23)	158	NM_001365903	9223		NM_004742	ENSG00000151276	MAGI1	AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|MAGI-1b|Magi1d|TNRC19|WWP3	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
162305	chr3	47417871	47418030	+	0	NA	intron (NM_012235, intron 16 of 22)	G-rich|Low_complexity|Low_complexity	36929	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
134919	chr2	151238751	151239230	+	0	NA	Intergenic	Intergenic	22873	NM_198557	375287		NM_198557	ENSG00000184898	RBM43	C2orf38	RNA binding motif protein 43	protein-coding
44031	chr11	95092671	95093430	+	0	NA	intron (NM_015036, intron 1 of 1)	intron (NM_015036, intron 1 of 1)	3204	NM_015036	23052		NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
208057	chr7	56072301	56072700	+	0	NA	intron (NM_001042468, intron 2 of 8)	AluSg|SINE|Alu	8214	NM_001366649	25870		NM_015411	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
26698	chr10	22642701	22643630	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	70943	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
138059	chr2	201642071	201643880	+	0	NA	promoter-TSS (NM_152388)	promoter-TSS (NM_152388)	-305	NM_152388	65062		NM_152388	ENSG00000155755	TMEM237	ALS2CR4|JBTS14	transmembrane protein 237	protein-coding
177234	chr4	108612401	108612600	+	0	NA	intron (NR_026968, intron 1 of 3)	MIRb|SINE|MIR	7957	NR_026968	285456		NM_182591	ENSG00000234492	RPL34-DT	RPL34-AS1	RPL34 divergent transcript	ncRNA
204917	chr7	6162301	6162850	+	0	NA	3' UTR (NM_001367580, exon 13 of 13)	3' UTR (NM_001367580, exon 13 of 13)	9562	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
221836	chr8	128184601	128184900	+	0	NA	Intergenic	Intergenic	34634	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
160003	chr3	18379871	18380030	+	0	NA	intron (NM_001322873, intron 8 of 10)	intron (NM_001322873, intron 8 of 10)	45389	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
113539	chr19	10164851	10165350	+	0	NA	intron (NM_001318730, intron 10 of 39)	AluJb|SINE|Alu	29853	NM_001318731	1786		NM_001379	ENSG00000130816	DNMT1	ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI	DNA methyltransferase 1	protein-coding
220109	chr8	94553001	94554400	+	0	NA	promoter-TSS (NM_015496)	promoter-TSS (NM_015496)	-182	NM_183009	25962		NM_015496	ENSG00000164944	VIRMA	KIAA1429|MSTP054|fSAP121	vir like m6A methyltransferase associated	protein-coding
197719	chr6	86775321	86775400	+	0	NA	Intergenic	Intergenic	-162168	NM_000865	3354		NM_000865	ENSG00000168830	HTR1E	5-HT1E	5-hydroxytryptamine receptor 1E	protein-coding
194766	chr6	34070301	34070800	+	0	NA	intron (NM_001282847, intron 2 of 9)	intron (NM_001282847, intron 2 of 9)	35417	NM_001256813	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
221511	chr8	124629521	124630530	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	90902	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
69602	chr14	97428401	97428600	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-30316	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
97156	chr17	42575851	42575950	+	0	NA	intron (NM_001256016, intron 3 of 8)	AluY|SINE|Alu	1816	NR_045671	29893		NM_013290	ENSG00000131470	PSMC3IP	GT198|HOP2|HUMGT198A|ODG3|TBPIP	PSMC3 interacting protein	protein-coding
18403	chr1	161423301	161423600	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-55574	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
171884	chr4	781001	782550	+	0	NA	promoter-TSS (NR_036511)	promoter-TSS (NR_036511)	73	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
222564	chr8	140618151	140618450	+	0	NA	intron (NM_012154, intron 1 of 18)	AluSg4|SINE|Alu	17333	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
231253	chr9	129992101	129992700	+	0	NA	intron (NM_001363755, intron 2 of 15)	intron (NM_001363755, intron 2 of 15)	50789	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
227286	chr9	89390371	89390730	+	0	NA	intron (NM_001371200, intron 11 of 20)	intron (NM_001371200, intron 11 of 20)	71699	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
197687	chr6	85632671	85633030	+	0	NA	intron (NM_001253771, intron 5 of 10)	AluJr4|SINE|Alu	8601	NM_001159675	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
112202	chr19	5681851	5682900	+	0	NA	intron (NM_001267869, intron 1 of 5)	L2|LINE|L2	1348	NM_198707	374875		NM_198533	ENSG00000167733	HSD11B1L	11-DH3|11-beta-HSD3|HSD1L|HSD3|SCDR10|SCDR10B|SDR26C2	hydroxysteroid 11-beta dehydrogenase 1 like	protein-coding
108254	chr18	63229471	63229630	+	0	NA	intron (NM_000633, intron 2 of 2)	MSTA|LTR|ERVL-MaLR	90219	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
158450	chr22	50624271	50624830	+	0	NA	3' UTR (NM_001085425, exon 9 of 9)	3' UTR (NM_001085425, exon 9 of 9)	3602	NM_000487	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
84444	chr16	30409271	30410030	+	0	NA	intron (NM_016643, intron 2 of 2)	intron (NM_016643, intron 2 of 2)	2044	NM_001142305	51333		NM_016643	ENSG00000179965	ZNF771	DSC43	zinc finger protein 771	protein-coding
15426	chr1	150267001	150267200	+	0	NA	non-coding (NR_045033, exon 5 of 6)	non-coding (NR_045033, exon 5 of 6)	1916	NM_001077628	51107		NM_016022	ENSG00000117362	APH1A	6530402N02Rik|APH-1|APH-1A|CGI-78	aph-1 homolog A, gamma-secretase subunit	protein-coding
55654	chr12	107327771	107328130	+	0	NA	intron (NM_001347944, intron 1 of 14)	MLT1J1|LTR|ERVL-MaLR	7362	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
120438	chr19	44207201	44207880	+	0	NA	Intergenic	Intergenic	-4988	NM_001289172	7770		NM_182490	ENSG00000131115	ZNF227	-	zinc finger protein 227	protein-coding
30642	chr10	80459021	80460000	+	0	NA	5' UTR (NM_001351270, exon 1 of 10)	5' UTR (NM_001351270, exon 1 of 10)	225	NM_001351270	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
125572	chr2	16394951	16395340	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	270689	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
175690	chr4	77064501	77064730	+	0	NA	intron (NM_001348134, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	10295	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
238602	chrX	153923851	153924670	+	0	NA	intron (NM_001164741, intron 1 of 22)	intron (NM_001164741, intron 1 of 22)	2004	NM_001164741	393		NM_001666	ENSG00000089820	ARHGAP4	C1|RGC1|RhoGAP4|SrGAP4|p115	Rho GTPase activating protein 4	protein-coding
209741	chr7	87190721	87190980	+	0	NA	intron (NR_024550, intron 13 of 17)	intron (NR_024550, intron 13 of 17)	28882	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
221497	chr8	124543251	124543550	+	0	NA	intron (NM_005005, intron 2 of 3)	intron (NM_005005, intron 2 of 3)	4277	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
116043	chr19	17206271	17206650	+	0	NA	intron (NM_004145, intron 33 of 39)	intron (NM_004145, intron 33 of 39)	-8897	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
89840	chr16	89587801	89588630	+	0	NA	intron (NM_153636, intron 9 of 14)	CpG-10265	12457	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
71394	chr14	105520671	105521580	+	0	NA	Intergenic	Intergenic	-5458	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
172408	chr4	1794701	1796200	+	0	NA	intron (NM_022965, intron 2 of 15)	CpG-20863	2138	NM_001163213	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
58927	chr13	19758501	19758700	+	0	NA	intron (NM_001354909, intron 3 of 8)	AluSx|SINE|Alu	24345	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
177380	chr4	112119171	112119900	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-25919	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
178814	chr4	153525071	153525850	+	0	NA	intron (NM_015196, intron 3 of 34)	AluSz|SINE|Alu	59100	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
49359	chr12	22327971	22328350	+	0	NA	intron (NM_001304450, intron 1 of 3)	MER20|DNA|hAT-Charlie	6554	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
40931	chr11	65264201	65264400	+	0	NA	intron (NM_002689, intron 1 of 17)	AluSx1|SINE|Alu	2338	NM_002689	23649		NM_002689	ENSG00000014138	POLA2	-	DNA polymerase alpha 2, accessory subunit	protein-coding
45773	chr11	119266401	119267680	+	0	NA	intron (NM_005188, intron 2 of 15)	intron (NM_005188, intron 2 of 15)	45972	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
148451	chr20	64005721	64006180	+	0	NA	intron (NM_012469, intron 9 of 20)	AluJb|SINE|Alu	24818	NM_012469	24148		NM_012469	ENSG00000101161	PRPF6	ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6	pre-mRNA processing factor 6	protein-coding
199489	chr6	118650371	118650900	+	0	NA	intron (NM_001178035, intron 2 of 13)	CpG	956	NM_206921	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
27152	chr10	28336551	28337080	+	0	NA	Intergenic	Intergenic	-33751	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
90587	chr17	1569451	1569750	+	0	NA	3' UTR (NM_001321365, exon 15 of 15)	3' UTR (NM_001321365, exon 15 of 15)	-6808	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
195397	chr6	36771071	36772180	+	0	NA	intron (NM_001376889, intron 11 of 21)	L2b|LINE|L2	-5830	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
238952	chrX	155026401	155028430	+	0	NA	intron (NM_023934, intron 1 of 4)	CpG	571	NM_023934	65991		NM_023934	ENSG00000165775	FUNDC2	DC44|HCBP6|HCC3|PD03104	FUN14 domain containing 2	protein-coding
234012	chrX	3699601	3700930	+	0	NA	intron (NM_005044, intron 1 of 8)	L1MC|LINE|L1	13384	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
6320	chr1	27655871	27656650	+	0	NA	Intergenic	Intergenic	6462	NR_151722	111216282		NR_151722	ENSG00000233975	LINC02574	HEAL	long intergenic non-protein coding RNA 2574	ncRNA
174637	chr4	40326451	40326550	+	0	NA	intron (NR_121640, intron 1 of 2)	AluSx|SINE|Alu	-8833	NM_017581	55584		NM_017581	ENSG00000174343	CHRNA9	HSA243342|NACHRA9	cholinergic receptor nicotinic alpha 9 subunit	protein-coding
219858	chr8	85067521	85067600	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-39678	NM_033402	85444		NM_033402	ENSG00000133739	LRRCC1	CLERC|CLERK|SAP2|VFL1	leucine rich repeat and coiled-coil centrosomal protein 1	protein-coding
52573	chr12	56167821	56168680	+	0	NA	intron (NM_003075, intron 24 of 27)	intron (NM_003075, intron 24 of 27)	9891	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
121206	chr19	46606121	46606380	+	0	NA	intron (NM_001329926, intron 2 of 5)	intron (NM_001329926, intron 2 of 5)	4178	NM_001329922	808		NM_005184	ENSG00000160014	CALM3	CALM|CAM1|CAM2|CAMB|CPVT6|CaM|CaMIII|HEL-S-72|LQT16|PHKD|PHKD3	calmodulin 3	protein-coding
21995	chr1	209764971	209765350	+	0	NA	intron (NM_025228, intron 8 of 16)	AluSz6|SINE|Alu	-3405	NM_001287754	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
209412	chr7	76347901	76348600	+	0	NA	intron (NM_012479, intron 1 of 1)	intron (NM_012479, intron 1 of 1)	10741	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
28763	chr10	62032971	62033350	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-16197	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
162667	chr3	48921121	48922050	+	0	NA	intron (NM_001317334, intron 1 of 13)	AluSz|SINE|Alu	-2200	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
213005	chr7	131006151	131006450	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	92836	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
55215	chr12	101799721	101800380	+	0	NA	intron (NM_024312, intron 1 of 20)	MER65-int|LTR|ERV1	30909	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
49157	chr12	14953901	14954980	+	0	NA	intron (NM_001175, intron 1 of 5)	intron (NM_001175, intron 1 of 5)	-3289	NM_001321422	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
176893	chr4	102790071	102790230	+	0	NA	intron (NR_125932, intron 4 of 4)	L1MB5|LINE|L1	13113	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
227764	chr9	93112001	93112200	+	0	NA	non-coding (NR_134465, exon 3 of 4)	non-coding (NR_134465, exon 3 of 4)	15883	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
185059	chr5	116038801	116039100	+	0	NA	intron (NM_001385024, intron 1 of 2)	intron (NM_001385024, intron 1 of 2)	6478	NM_001195581	644100		NM_001195581	ENSG00000268223	ARL14EPL	-	ADP ribosylation factor like GTPase 14 effector protein like	protein-coding
226419	chr9	70530801	70531000	+	0	NA	3' UTR (NM_001007471, exon 25 of 25)	3' UTR (NM_001007471, exon 25 of 25)	-116243	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
194330	chr6	32848921	32849480	+	0	NA	intron (NM_001292022, intron 5 of 10).7	intron (NM_001292022, intron 5 of 10).7	3561	NM_001292022	6890		NM_000593	ENSG00000168394	TAP1	ABC17|ABCB2|APT1|D6S114E|PSF-1|PSF1|RING4|TAP1*0102N|TAP1N	transporter 1, ATP binding cassette subfamily B member	protein-coding
97028	chr17	42309101	42309850	+	0	NA	exon (NM_001288720, exon 17 of 18)	exon (NM_001288720, exon 17 of 18)	21419	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
21960	chr1	208239021	208239680	+	0	NA	intron (NM_025179, intron 1 of 31)	intron (NM_025179, intron 1 of 31)	5034	NM_025179	5362		NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
15648	chr1	150765651	150766250	+	0	NA	promoter-TSS (NM_004079)	promoter-TSS (NM_004079)	-172	NM_001199739	1520		NM_004079	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
195891	chr6	41704851	41705150	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	28610	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
156728	chr22	41801901	41802100	+	0	NA	intron (NM_001382346, intron 2 of 7)	MER65A|LTR|ERV1	1321	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
76571	chr15	75292021	75292750	+	0	NA	intron (NM_001145224, intron 12 of 17)	intron (NM_001145224, intron 12 of 17)	9544	NM_001145224	653643		NM_001145224	ENSG00000140478	GOLGA6D	-	golgin A6 family member D	protein-coding
223477	chr8	144053321	144053980	+	0	NA	intron (NM_017570, intron 19 of 26)	intron (NM_017570, intron 19 of 26)	3730	NR_106905	102465509		NR_106905	ENSG00000277888	MIR6846	hsa-mir-6846	microRNA 6846	ncRNA
158044	chr22	49939301	49939500	+	0	NA	Intergenic	AluSx1|SINE|Alu	20766	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
82869	chr16	21533721	21533980	+	0	NA	Intergenic	AluSp|SINE|Alu	-13406	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
137612	chr2	197301221	197301550	+	0	NA	non-coding (NR_046837, exon 2 of 6)	non-coding (NR_046837, exon 2 of 6)	1134	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
45253	chr11	117993221	117993700	+	0	NA	intron (NM_001558, intron 4 of 6)	intron (NM_001558, intron 4 of 6)	7066	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
227663	chr9	92975971	92976130	+	0	NA	intron (NM_001369951, intron 2 of 17)	intron (NM_001369951, intron 2 of 17)	1581	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
130911	chr2	87468471	87468630	+	0	NA	intron (NR_024206, intron 1 of 1)	intron (NR_024206, intron 1 of 1)	-1400	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
103889	chr17	79794721	79795300	+	0	NA	exon (NM_020649, exon 5 of 5)	exon (NM_020649, exon 5 of 5)	2067	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
233887	chrX	1587451	1588000	+	0	NA	Intergenic	(CCCTC)n|Simple_repeat|Simple_repeat	-3879	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
98499	chr17	47362251	47362350	+	0	NA	intron (NM_152347, intron 10 of 24)	LTR13|LTR|ERVK	38345	NM_152347	124989		NM_152347	ENSG00000178852	EFCAB13	C17orf57	EF-hand calcium binding domain 13	protein-coding
210762	chr7	100687551	100688380	+	0	NA	intron (NR_164719, intron 6 of 26)	intron (NR_164719, intron 6 of 26)	6285	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
164978	chr3	71304821	71305400	+	0	NA	promoter-TSS (NM_001244812)	promoter-TSS (NM_001244812)	-339	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
207782	chr7	50212471	50212930	+	0	NA	Intergenic	Intergenic	-91364	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
16487	chr1	154752651	154752750	+	0	NA	intron (NM_001204087, intron 3 of 8)	intron (NM_001204087, intron 3 of 8)	107176	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
183372	chr5	77255851	77255950	+	0	NA	intron (NM_001029853, intron 1 of 20)	MER45C|DNA|hAT-Tip100	45220	NM_003719	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
6453	chr1	28250421	28250880	+	0	NA	Intergenic	AluJb|SINE|Alu	-8868	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
214154	chr7	144391651	144392150	+	0	NA	Intergenic	Intergenic	18327	NM_001080413	135935		NM_001080413	ENSG00000106410	NOBOX	OG-2|OG2|OG2X|POF5|TCAG_12042	NOBOX oogenesis homeobox	protein-coding
224101	chr9	4563101	4563550	+	0	NA	intron (NM_004170, intron 3 of 11)	intron (NM_004170, intron 3 of 11)	72857	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
194284	chr6	32659751	32660630	+	0	NA	3' UTR (NM_002123, exon 5 of 5)	3' UTR (NM_002123, exon 5 of 5)	310	NR_133907	106480429		NR_133907	ENSG00000223534	HLA-DQB1-AS1	-	HLA-DQB1 antisense RNA 1	ncRNA
10633	chr1	70204721	70206350	+	0	NA	promoter-TSS (NM_001190987)	promoter-TSS (NM_001190987)	44	NM_017768	55631		NM_017768	ENSG00000066557	LRRC40	dJ677H15.1	leucine rich repeat containing 40	protein-coding
9379	chr1	47308071	47308630	+	0	NA	intron (NM_003035, intron 2 of 16)	MER11C|LTR|ERVK	5797	NM_001282936	6491		NM_003035	ENSG00000123473	STIL	MCPH7|SIL	STIL centriolar assembly protein	protein-coding
212832	chr7	130490701	130491300	+	0	NA	promoter-TSS (NM_177525)	promoter-TSS (NM_177525)	172	NR_004382	317751		NR_004382	ENSG00000272701	MESTIT1	MEST-AS1|MEST-IT|MEST-IT1|NCRNA00040|PEG1-AS	MEST intronic transcript 1, antisense RNA	ncRNA
168106	chr3	138592351	138592650	+	0	NA	promoter-TSS (NM_001320600)	promoter-TSS (NM_001320600)	-544	NM_001320600	80321		NM_024491	ENSG00000114107	CEP70	BITE	centrosomal protein 70	protein-coding
17077	chr1	156122451	156122900	+	0	NA	intron (NM_170707, intron 1 of 11)	intron (NM_170707, intron 1 of 11)	-3495	NM_001282624	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
192519	chr6	25027001	25028580	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	14498	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
83004	chr16	22195401	22196730	+	0	NA	Intergenic	Intergenic	-10213	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
116376	chr19	17936521	17937180	+	0	NA	intron (NM_138442, intron 2 of 4)	AluSx|SINE|Alu	1754	NM_138442	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
217446	chr8	28620571	28620930	+	0	NA	Intergenic	AluJo|SINE|Alu	80714	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
9947	chr1	54671871	54672700	+	0	NA	intron (NM_001039464, intron 7 of 23)	intron (NM_001039464, intron 7 of 23)	30499	NM_001039464	374977		NM_198547	ENSG00000184313	MROH7	C1orf175|HEATR8	maestro heat like repeat family member 7	protein-coding
77779	chr15	86082771	86083130	+	0	NA	TTS (NR_120368)	TTS (NR_120368)	3330	NM_152336	123624		NM_152336	ENSG00000273540	AGBL1	CCP4|FECD8	AGBL carboxypeptidase 1	protein-coding
235127	chrX	40794021	40794500	+	0	NA	Intergenic	MER52-int|LTR|ERV1	38936	NR_027761	100132831		NR_027761		TNIP2P1	-	TNIP2 pseudogene 1	pseudo
105129	chr17	82226071	82226780	+	0	NA	Intergenic	Intergenic	-1981	NM_001042422	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
4502	chr1	21667371	21667530	+	0	NA	intron (NM_001145657, intron 1 of 26)	intron (NM_001145657, intron 1 of 26)	1907	NM_001350526	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
164301	chr3	57669801	57670150	+	0	NA	intron (NM_152678, intron 3 of 19)	AluSx1|SINE|Alu	23102	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
144623	chr20	35883551	35883650	+	0	NA	intron (NM_016436, intron 9 of 17)	AluJb|SINE|Alu	70902	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
172064	chr4	1025971	1026650	+	0	NA	3' UTR (NM_021923, exon 6 of 6)	3' UTR (NM_021923, exon 6 of 6)	13846	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
59988	chr13	32385471	32385630	+	0	NA	intron (NM_000059, intron 24 of 26)	intron (NM_000059, intron 24 of 26)	42580	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
127537	chr2	42328101	42328830	+	0	NA	intron (NM_019063, intron 21 of 22)	intron (NM_019063, intron 21 of 22)	31573	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
235292	chrX	42158001	42158230	+	0	NA	Intergenic	L1PA13|LINE|L1	-234561	NM_001367721	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
178200	chr4	142434521	142434880	+	0	NA	intron (NM_001385342, intron 1 of 23)	intron (NM_001385342, intron 1 of 23)	-28841	NR_169599	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
164034	chr3	53260401	53260600	+	0	NA	Intergenic	Intergenic	-4386	NM_001258028	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
12102	chr1	100032571	100032930	+	0	NA	3' UTR (NM_012243, exon 8 of 8)	3' UTR (NM_012243, exon 8 of 8)	-5345	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
67242	chr14	68971621	68972080	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	7452	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
93425	chr17	18435601	18436200	+	0	NA	Intergenic	Intergenic	-4008	NR_073414	729252		NR_073414		KRT16P1	KRT14P|KRT16P	keratin 16 pseudogene 1	pseudo
831	chr1	1576571	1576800	+	0	NA	Intergenic	AluSc|SINE|Alu	-1822	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
190515	chr5	180539621	180539880	+	0	NA	intron (NR_163438, intron 2 of 10)	AluY|SINE|Alu	-1904	NM_001370474	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
11506	chr1	90923201	90923400	+	0	NA	intron (NM_032186, intron 2 of 3)	intron (NM_032186, intron 2 of 3)	71541	NR_146610	105378854		NR_146610		LINC01763	-	long intergenic non-protein coding RNA 1763	ncRNA
71024	chr14	104770821	104771380	+	0	NA	intron (NM_001382433, intron 14 of 15)	intron (NM_001382433, intron 14 of 15)	17953	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
105994	chr18	7568151	7568550	+	0	NA	intron (NM_002845, intron 1 of 30)	CpG	1034	NM_001105244	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
46832	chr11	131688071	131688250	+	0	NA	intron (NM_001352006, intron 2 of 9)	intron (NM_001352006, intron 2 of 9)	-24604	NR_126159	101929637		NM_207432		NTM-AS1	C11orf39	NTM antisense RNA 1	ncRNA
233506	chr9	138237471	138237630	+	0	NA	intron (NR_146178, intron 5 of 14)	intron (NR_146178, intron 5 of 14)	20694	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
228306	chr9	98118801	98120150	+	0	NA	promoter-TSS (NM_033219)	promoter-TSS (NM_033219)	-253	NM_033219	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
95944	chr17	38968371	38968550	+	0	NA	Intergenic	L2a|LINE|L2	-1057	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
152258	chr22	20241871	20243100	+	0	NA	exon (NM_023004, exon 2 of 2)	exon (NM_023004, exon 2 of 2)	6726	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
93373	chr17	18245601	18246450	+	0	NA	exon (NM_002018, exon 26 of 30)	exon (NM_002018, exon 26 of 30)	12713	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
120361	chr19	43603671	43604030	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	7255	NM_001145347	79177		NM_024327	ENSG00000124444	ZNF576	-	zinc finger protein 576	protein-coding
81777	chr16	11517751	11518050	+	0	NA	intron (NM_001370704, intron 4 of 66)	intron (NM_001370704, intron 4 of 66)	9347	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
59239	chr13	23888721	23890080	+	0	NA	promoter-TSS (NM_001135816)	promoter-TSS (NM_001135816)	0	NM_005932	4285		NM_005932	ENSG00000027001	MIPEP	COXPD31|HMIP|MIP	mitochondrial intermediate peptidase	protein-coding
76620	chr15	75453331	75455200	+	0	NA	intron (NM_001145357, intron 1 of 20)	CpG-8441	1550	NM_001145357	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
178081	chr4	140143621	140143880	+	0	NA	intron (NM_018717, intron 1 of 4)	AluSx1|SINE|Alu	10434	NM_018717	55534		NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3	mastermind like transcriptional coactivator 3	protein-coding
61860	chr13	77008601	77008800	+	0	NA	intron (NM_012158, intron 4 of 4)	AluSz|SINE|Alu	16619	NM_006493	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
186528	chr5	138435751	138436050	+	0	NA	3' UTR (NM_016604, exon 24 of 24)	3' UTR (NM_016604, exon 24 of 24)	-3157	NM_016606	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
159232	chr3	12911871	12912250	+	0	NA	intron (NM_014869, intron 9 of 13)	intron (NM_014869, intron 9 of 13)	-26849	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
87194	chr16	69407051	69407150	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-17519	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
10354	chr1	64932301	64932900	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	33949	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
144724	chr20	36571301	36572110	+	0	NA	intron (NR_109939, intron 1 of 4)	intron (NR_109939, intron 1 of 4)	1570	NR_109939	101926987		NR_109939	ENSG00000232907	DLGAP4-AS1	CCAT7	DLGAP4 antisense RNA 1	ncRNA
48273	chr12	8695021	8695330	+	0	NA	intron (NM_001352267, intron 1 of 5)	intron (NM_001352267, intron 1 of 5)	-2008	NM_001352268	57494		NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding
205144	chr7	7185151	7185600	+	0	NA	intron (NM_020156, intron 1 of 3)	MLT1C|LTR|ERVL-MaLR	2831	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
158922	chr3	10020371	10020730	+	0	NA	intron (NR_002786, intron 2 of 2)	AluSg7|SINE|Alu	5586	NR_002786	152302		NR_002786	ENSG00000186162	CIDECP1	CICE|CIDECP	CIDEC pseudogene 1	pseudo
175979	chr4	81504171	81504330	+	0	NA	Intergenic	(ACACAG)n|Simple_repeat|Simple_repeat	-32343	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
189062	chr5	170264051	170264350	+	0	NA	intron (NM_005565, intron 10 of 20)	MER65C|LTR|ERV1	31194	NM_001305393	133874		NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
29369	chr10	69801171	69801630	+	0	NA	promoter-TSS (NM_080802)	promoter-TSS (NM_080802)	-506	NM_080800	1305		NM_005203	ENSG00000197467	COL13A1	CMS19|COLXIIIA1	collagen type XIII alpha 1 chain	protein-coding
61401	chr13	51635171	51635730	+	0	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	50988	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
151223	chr21	45254001	45254400	+	0	NA	intron (NR_135279, intron 2 of 2)	intron (NR_135279, intron 2 of 2)	19860	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
65409	chr14	50821421	50822150	+	0	NA	promoter-TSS (NR_135258)	promoter-TSS (NR_135258)	-12	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
146426	chr20	49594171	49594950	+	0	NA	Intergenic	Intergenic	-26423	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
61895	chr13	77317901	77318200	+	0	NA	intron (NM_015057, intron 1 of 82)	ERV3-16A3_I-int|LTR|ERVL	9044	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
143395	chr20	29306471	29307270	+	0	NA	Intergenic	Intergenic	110091	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
238420	chrX	150669471	150669630	+	0	NA	intron (NM_001376906, intron 14 of 14)	L1PA8A|LINE|L1	-23412	NM_001353993	8776		NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
5692	chr1	26365151	26365450	+	0	NA	intron (NM_173574, intron 3 of 5)	intron (NM_173574, intron 3 of 5)	7450	NM_001114759	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
171011	chr3	194768051	194768230	+	0	NA	intron (NR_146990, intron 2 of 2)	L2c|LINE|L2	569	NR_146990	105374293		NR_146990	ENSG00000230401	LINC01972	-	long intergenic non-protein coding RNA 1972	ncRNA
48086	chr12	7189101	7191550	+	0	NA	5' UTR (NM_001374648, exon 1 of 14)	5' UTR (NM_001374648, exon 1 of 14)	639	NM_001351128	5830		NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
47162	chr12	773071	773530	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	20377	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
151347	chr21	45642721	45644530	+	0	NA	promoter-TSS (NM_001348239)	promoter-TSS (NM_001348239)	-100	NM_001382287	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
196008	chr6	42011501	42011900	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	37194	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
185353	chr5	127030001	127032030	+	0	NA	promoter-TSS (NM_178450)	promoter-TSS (NM_178450)	-457	NM_178450	115123		NM_178450	ENSG00000173926	MARCHF3	MARCH-III|MARCH3|RNF173	membrane associated ring-CH-type finger 3	protein-coding
108311	chr18	63409201	63410000	+	0	NA	intron (NM_004869, intron 3 of 10)	L2b|LINE|L2	12876	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
210598	chr7	100407351	100407890	+	0	NA	intron (NM_001258008, intron 10 of 15)	AluJo|SINE|Alu	21083	NM_001258008	55063		NM_017984	ENSG00000078487	ZCWPW1	ZCW1	zinc finger CW-type and PWWP domain containing 1	protein-coding
122312	chr19	49125221	49126000	+	0	NA	intron (NR_103842, intron 1 of 28)	intron (NR_103842, intron 1 of 28)	6066	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
99338	chr17	49852871	49853230	+	0	NA	Intergenic	Intergenic	-5033	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
145101	chr20	38730651	38732250	+	0	NA	Intergenic	Intergenic	6964	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
226571	chr9	72525151	72525450	+	0	NA	intron (NM_138691, intron 1 of 23)	intron (NM_138691, intron 1 of 23)	3692	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
111537	chr19	4028121	4028500	+	0	NA	intron (NM_015897, intron 4 of 10)	intron (NM_015897, intron 4 of 10)	20574	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
8440	chr1	40663021	40663700	+	0	NA	intron (NM_014747, intron 1 of 7)	intron (NM_014747, intron 1 of 7)	2322	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
7523	chr1	34684221	34684480	+	0	NA	Intergenic	Intergenic	-14656	NR_030278	693137		NR_030278	ENSG00000207941	MIR552	MIRN552|hsa-mir-552	microRNA 552	ncRNA
170750	chr3	188362371	188362800	+	0	NA	intron (NM_001167671, intron 3 of 11)	intron (NM_001167671, intron 3 of 11)	149689	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
89515	chr16	89168771	89169280	+	0	NA	non-coding (NR_046200, exon 3 of 3)	non-coding (NR_046200, exon 3 of 3)	2642	NR_046200	400558		NR_046200	ENSG00000205015	LINC02138	-	long intergenic non-protein coding RNA 2138	ncRNA
44945	chr11	116783671	116783830	+	0	NA	intron (NM_001317086, intron 8 of 12)	intron (NM_001317086, intron 8 of 12)	4273	NM_003904	8882		NM_003904	ENSG00000109917	ZPR1	GKAF|ZNF259	ZPR1 zinc finger	protein-coding
125749	chr2	20818851	20819150	+	0	NA	intron (NM_001282719, intron 1 of 5)	MamSINE1|SINE|tRNA-RTE	4101	NM_021925	60526		NM_021925	ENSG00000118961	LDAH	C2orf43|hLDAH	lipid droplet associated hydrolase	protein-coding
112185	chr19	5666971	5667500	+	0	NA	intron (NM_001320572, intron 18 of 20)	intron (NM_001320572, intron 18 of 20)	13003	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
19953	chr1	184845871	184846100	+	0	NA	intron (NM_052966, intron 5 of 13)	L1HS|LINE|L1	-91127	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
76737	chr15	76327621	76327880	+	0	NA	Intergenic	Intergenic	-9023	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
101381	chr17	67305351	67305450	+	0	NA	Intergenic	AluY|SINE|Alu	-60204	NM_001330447	9931		NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
82177	chr16	14930151	14930650	+	0	NA	promoter-TSS (NR_106828)	promoter-TSS (NR_106828)	-420	NR_106828	102465461		NR_106828	ENSG00000278265	MIR6770-1	hsa-mir-6770-1	microRNA 6770-1	ncRNA
11702	chr1	91858271	91858430	+	0	NA	intron (NR_036634, intron 2 of 17)	AluSx|SINE|Alu	27801	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
233702	chrX	1235451	1235750	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-22877	NM_001012288	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
26897	chr10	26441421	26443000	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	3869	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
155100	chr22	37592251	37593230	+	0	NA	Intergenic	Intergenic	-12653	NM_006498	3957		NM_006498	ENSG00000100079	LGALS2	HL14	galectin 2	protein-coding
235038	chrX	40085571	40086500	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	11923	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
207807	chr7	50301701	50302050	+	0	NA	Intergenic	AluJr|SINE|Alu	-2189	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
34150	chr10	128058951	128059050	+	0	NA	intron (NR_136149, intron 2 of 3)	intron (NR_136149, intron 2 of 3)	3425	NR_136150	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
137809	chr2	199985601	199985870	+	0	NA	Intergenic	Intergenic	-30244	NM_001039693	129450		NM_152382	ENSG00000162971	TYW5	C2orf60|hTYW5	tRNA-yW synthesizing protein 5	protein-coding
164850	chr3	71048151	71048450	+	0	NA	intron (NM_001244812, intron 4 of 15)	intron (NM_001244812, intron 4 of 15)	16624	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
104634	chr17	81439501	81440250	+	0	NA	intron (NM_001377448, intron 4 of 27)	intron (NM_001377448, intron 4 of 27)	11313	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
63244	chr13	113938351	113938900	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-9634	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
153376	chr22	24543051	24543430	+	0	NA	intron (NM_001284256, intron 4 of 4)	intron (NM_001284256, intron 4 of 4)	11898	NM_001284257	83606		NM_031444	ENSG00000138867	GUCD1	C22orf13|LLN4	guanylyl cyclase domain containing 1	protein-coding
16039	chr1	152353701	152354300	+	0	NA	exon (NM_001014342, exon 3 of 3)	exon (NM_001014342, exon 3 of 3)	6006	NM_001014342	388698		NM_001014342	ENSG00000143520	FLG2	IFPS|PSS6	filaggrin 2	protein-coding
169545	chr3	170177371	170177530	+	0	NA	intron (NM_001308116, intron 2 of 14)	AluSz|SINE|Alu	4283	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
192471	chr6	24930621	24930950	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	5175	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
83192	chr16	23498951	23499350	+	0	NA	intron (NM_015044, intron 1 of 16)	AluSx3|SINE|Alu	11344	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
141430	chr2	240998271	240999130	+	0	NA	promoter-TSS (NM_001080437)	promoter-TSS (NM_001080437)	82	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
3877	chr1	16986951	16987280	+	0	NA	exon (NM_022089, exon 26 of 29)	exon (NM_022089, exon 26 of 29)	-5529	NM_001135247	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
40045	chr11	62711021	62711430	+	0	NA	intron (NR_037946, intron 13 of 23)	AluSq|SINE|Alu	-1606	NR_037949								
173813	chr4	17821201	17821880	+	0	NA	intron (NR_073124, intron 6 of 19)	AluSx1|SINE|Alu	10561	NM_022346	64151		NM_022346	ENSG00000109805	NCAPG	CAPG|CHCG|NY-MEL-3|YCG1	non-SMC condensin I complex subunit G	protein-coding
104733	chr17	81653771	81654130	+	0	NA	promoter-TSS (NM_001365725)	promoter-TSS (NM_001365725)	-236	NM_001365725	5148		NM_002602	ENSG00000185527	PDE6G	PDEG|RP57	phosphodiesterase 6G	protein-coding
11348	chr1	89606351	89607680	+	0	NA	Intergenic	Intergenic	25879	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
223499	chr8	144080371	144080530	+	0	NA	TTS (NR_106906)	TTS (NR_106906)	576	NR_106906	102465510		NR_106906	ENSG00000284200	MIR6847	hsa-mir-6847	microRNA 6847	ncRNA
43164	chr11	75345821	75346300	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	5601	NM_004041	408		NM_004041	ENSG00000137486	ARRB1	ARB1|ARR1	arrestin beta 1	protein-coding
151431	chr21	46130351	46131000	+	0	NA	TTS (NM_058175)	TTS (NM_058175)	-20700	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
230065	chr9	127437221	127438500	+	0	NA	intron (NM_001322260, intron 5 of 5)	MLT1C|LTR|ERVL-MaLR	10777	NR_002449	26783		NR_002449	ENSG00000201302	SNORA65	RNU65|U65	small nucleolar RNA, H/ACA box 65	snoRNA
39799	chr11	61962401	61965180	+	0	NA	TTS (NM_002032)	TTS (NM_002032)	3844	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
113728	chr19	10470871	10471250	+	0	NA	Intergenic	AluJb|SINE|Alu	18128	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
219970	chr8	89757071	89758350	+	0	NA	promoter-TSS (NM_003821)	promoter-TSS (NM_003821)	1	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
232363	chr9	135774051	135774550	+	0	NA	intron (NM_020822, intron 19 of 30)	(TGTGTGT)n|Simple_repeat|Simple_repeat	72115	NM_020822	57582		NM_020822	ENSG00000107147	KCNT1	DEE14|EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
33479	chr10	119075371	119077050	+	0	NA	intron (NM_003750, intron 1 of 21)	AluSc8|SINE|Alu	4607	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
159098	chr3	12552721	12552980	+	0	NA	TTS (NR_165360)	TTS (NR_165360)	-4164	NM_001271707	23609		NM_014160	ENSG00000075975	MKRN2	HSPC070|RNF62	makorin ring finger protein 2	protein-coding
119018	chr19	38907501	38908250	+	0	NA	non-coding (NR_040515, exon 5 of 5).2	non-coding (NR_040515, exon 5 of 5).2	4283	NM_001243212	643669		NM_001243212	ENSG00000262484	CCER2	-	coiled-coil glutamate rich protein 2	protein-coding
103253	chr17	77570371	77570730	+	0	NA	Intergenic	Intergenic	23609	NR_040050	100507351		NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
80550	chr16	2790621	2791080	+	0	NA	Intergenic	Intergenic	-2935	NM_001385464	260429		NM_152891	ENSG00000103355	PRSS33	EOS	serine protease 33	protein-coding
197980	chr6	90034801	90035000	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	140431	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
225724	chr9	36995921	36996600	+	0	NA	intron (NM_001280553, intron 4 of 7)	MIRb|SINE|MIR	38008	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
38393	chr11	44899971	44900230	+	0	NA	intron (NM_130783, intron 3 of 9)	intron (NM_130783, intron 3 of 9)	50060	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
36257	chr11	3780251	3780550	+	0	NA	intron (NR_157590, intron 2 of 31)	AluSc8|SINE|Alu	17146	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
84483	chr16	30483521	30483780	+	0	NA	intron (NM_002209, intron 7 of 30)	intron (NM_002209, intron 7 of 30)	10908	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
85768	chr16	56916501	56917500	+	0	NA	Intergenic	Intergenic	12736	NR_106923	102466752		NR_106923	ENSG00000283471	MIR6863	hsa-mir-6863	microRNA 6863	ncRNA
169827	chr3	177141801	177142900	+	0	NA	intron (NM_001374329, intron 1 of 15)	MER66A|LTR|ERV1	54128	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
211764	chr7	107208621	107209280	+	0	NA	3' UTR (NM_001161520, exon 21 of 21)	3' UTR (NM_001161520, exon 21 of 21)	39947	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
222913	chr8	142844271	142845380	+	0	NA	intron (NM_002066, intron 3 of 3)	L1ME3A|LINE|L1	10024	NM_002066	2765		NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
12094	chr1	99849501	99851150	+	0	NA	promoter-TSS (NM_000644)	promoter-TSS (NM_000644)	-36	NM_000642	178		NM_000028	ENSG00000162688	AGL	GDE	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein-coding
175997	chr4	81844651	81845280	+	0	NA	Intergenic	Intergenic	-373058	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
117206	chr19	19391851	19392150	+	0	NA	intron (NM_001384535, intron 1 of 10)	intron (NM_001384535, intron 1 of 10)	6157	NM_001384518	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
120848	chr19	45518201	45518400	+	0	NA	intron (NM_003370, intron 3 of 12)	AluSx|SINE|Alu	10821	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
222282	chr8	133450601	133450800	+	0	NA	Intergenic	Intergenic	121187	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
134780	chr2	147525751	147526050	+	0	NA	Intergenic	Intergenic	-318617	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
208281	chr7	65976071	65976230	+	0	NA	exon (NM_001293104, exon 4 of 11)	exon (NM_001293104, exon 4 of 11)	6063	NM_001284290	2990		NM_000181	ENSG00000169919	GUSB	BG|MPS7	glucuronidase beta	protein-coding
29661	chr10	71956101	71956430	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-8130	NM_004273	9469		NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate sulfotransferase 3	protein-coding
158407	chr22	50524961	50527400	+	0	NA	promoter-TSS (NM_005138)	promoter-TSS (NM_005138)	-35	NM_001169110	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
146315	chr20	49206251	49206600	+	0	NA	intron (NM_001319135, intron 1 of 14)	AluY|SINE|Alu	12870	NM_001319135	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
24604	chr1	246483401	246483830	+	0	NA	intron (NM_001167740, intron 1 of 11)	intron (NM_001167740, intron 1 of 11)	23664	NM_001375962	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
232069	chr9	133476321	133477200	+	0	NA	intron (NM_017585, intron 3 of 9)	intron (NM_017585, intron 3 of 9)	2339	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
102067	chr17	74921551	74922200	+	0	NA	intron (NM_173477, intron 1 of 2)	intron (NM_173477, intron 1 of 2)	1380	NM_173477	124590		NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	USH1 protein network component sans	protein-coding
201211	chr6	143538101	143538650	+	0	NA	Intergenic	Intergenic	23676	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
159066	chr3	11718271	11720000	+	0	NA	intron (NM_014667, intron 1 of 5)	intron (NM_014667, intron 1 of 5)	1404	NM_001284390	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
2359	chr1	9289071	9289430	+	0	NA	Intergenic	Intergenic	-3644	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
3575	chr1	16202071	16202630	+	0	NA	intron (NM_153213, intron 13 of 15)	intron (NM_153213, intron 13 of 15)	10302	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
188926	chr5	160424401	160424780	+	0	NA	intron (NM_001282382, intron 3 of 4)	intron (NM_001282382, intron 3 of 4)	2680	NM_001282382	9232		NM_004219	ENSG00000164611	PTTG1	EAP1|ECRAR|HPTTG|PTTG|TUTR1	PTTG1 regulator of sister chromatid separation, securin	protein-coding
81531	chr16	9098451	9099050	+	0	NA	intron (NM_014117, intron 2 of 3)	intron (NM_014117, intron 2 of 3)	7106	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
189236	chr5	171961351	171961650	+	0	NA	intron (NM_012300, intron 1 of 12)	intron (NM_012300, intron 1 of 12)	45138	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
85539	chr16	53093971	53094400	+	0	NA	intron (NR_168114, intron 2 of 2)	intron (NR_168114, intron 2 of 2)	-36827	NM_001352127	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
208000	chr7	55518151	55518250	+	0	NA	intron (NM_001321242, intron 2 of 4)	intron (NM_001321242, intron 2 of 4)	8680	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
167917	chr3	136170071	136170600	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSq2|SINE|Alu	24133	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
133354	chr2	113979371	113980150	+	0	NA	promoter-TSS (NR_148508)	promoter-TSS (NR_148508)	-125	NR_148508	440900		NR_034128	ENSG00000234199	LINC01191	VIN|lnc-ACTR3	long intergenic non-protein coding RNA 1191	ncRNA
128554	chr2	60884771	60885230	+	0	NA	intron (NM_001291746, intron 1 of 9)	intron (NM_001291746, intron 1 of 9)	3426	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
118501	chr19	35948571	35948730	+	0	NA	intron (NR_136525, intron 1 of 4)	L2c|LINE|L2	1535	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
41234	chr11	65721721	65722850	+	0	NA	Intergenic	MER90a|LTR|ERV1	-1487	NM_032193	84153		NM_032193	ENSG00000172922	RNASEH2C	AGS3|AYP1	ribonuclease H2 subunit C	protein-coding
210566	chr7	100350571	100350930	+	0	NA	intron (NR_036570, intron 5 of 16)	intron (NR_036570, intron 5 of 16)	-1568	NR_103728	101752334		NR_103728		PVRIG2P	-	PVR related immunoglobulin domain containing 2, pseudogene	pseudo
207586	chr7	44957471	44957630	+	0	NA	Intergenic	L1MB7|LINE|L1	21465	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
195346	chr6	36629251	36629800	+	0	NA	Intergenic	Intergenic	-7013	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
202264	chr6	157017821	157018380	+	0	NA	intron (NM_001371656, intron 6 of 20)	AluJo|SINE|Alu	-18327	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
105272	chr17	82455801	82456080	+	0	NA	Intergenic	AluJb|SINE|Alu	-2258	NM_001038618	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
211663	chr7	106273201	106273800	+	0	NA	intron (NM_005746, intron 3 of 10)	MIR3|SINE|MIR	11483	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
66997	chr14	67335801	67336000	+	0	NA	3' UTR (NM_022474, exon 15 of 15)	3' UTR (NM_022474, exon 15 of 15)	23904	NM_015994	51382		NM_015994	ENSG00000100554	ATP6V1D	ATP6M|VATD|VMA8	ATPase H+ transporting V1 subunit D	protein-coding
225623	chr9	36248021	36248380	+	0	NA	intron (NM_001190388, intron 1 of 10)	intron (NM_001190388, intron 1 of 10)	10248	NM_001190384	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
98563	chr17	47705371	47706000	+	0	NA	intron (NM_014726, intron 6 of 8)	intron (NM_014726, intron 6 of 8)	10421	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
6641	chr1	28933401	28934100	+	0	NA	intron (NM_001376013, intron 1 of 20)	L1MD3|LINE|L1	19174	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
204610	chr7	5361421	5361680	+	0	NA	intron (NM_001080495, intron 14 of 29)	CpG	61996	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
110189	chr19	1675521	1676150	+	0	NA	Intergenic	MIRc|SINE|MIR	-23220	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
235974	chrX	53714401	53715450	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-28206	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
87002	chr16	68239501	68240750	+	0	NA	Intergenic	CpG	-3998	NM_024939	80004		NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
86145	chr16	57736401	57737550	+	0	NA	intron (NM_005886, intron 1 of 19)	intron (NM_005886, intron 1 of 19)	1205	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
107169	chr18	35407901	35408200	+	0	NA	Intergenic	Intergenic	-30713	NM_001322291	252884		NM_145756	ENSG00000186496	ZNF396	ZSCAN14	zinc finger protein 396	protein-coding
237167	chrX	107669371	107669530	+	0	NA	Intergenic	L2c|LINE|L2	40940	NM_002764	5631		NM_002764	ENSG00000147224	PRPS1	ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI	phosphoribosyl pyrophosphate synthetase 1	protein-coding
22019	chr1	210234051	210234350	+	0	NA	promoter-TSS (NR_024337).2	promoter-TSS (NR_024337).2	-315	NR_024337	574036		NR_024337		SERTAD4-AS1	C1orf133	SERTAD4 antisense RNA 1	ncRNA
104116	chr17	80295371	80296130	+	0	NA	exon (NM_001256071, exon 10 of 68)	exon (NM_001256071, exon 10 of 68)	34898	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
221446	chr8	124199501	124200320	+	0	NA	intron (NR_125420, intron 2 of 2)	intron (NR_125420, intron 2 of 2)	-28388	NR_103547	157376		NM_182525	ENSG00000253868	FER1L6-AS2	C8orf78	FER1L6 antisense RNA 2	ncRNA
91280	chr17	4135351	4135730	+	0	NA	intron (NM_015113, intron 1 of 54)	L3|LINE|CR1	7490	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
41452	chr11	66104421	66104750	+	0	NA	intron (NM_018026, intron 1 of 23)	MER58A|DNA|hAT-Charlie	34313	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
212711	chr7	129785771	129787450	+	0	NA	Intergenic	AluSp|SINE|Alu	-11596	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
132962	chr2	111469301	111469500	+	0	NA	intron (NR_024373, intron 1 of 1)	AluSx3|SINE|Alu	25761	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
151368	chr21	45868001	45868400	+	0	NA	intron (NM_001348242, intron 6 of 18)	intron (NM_001348242, intron 6 of 18)	20050	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
67118	chr14	68494371	68494530	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	134337	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
170882	chr3	193030071	193030230	+	0	NA	Intergenic	Intergenic	-112294	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
101506	chr17	67717251	67718830	+	0	NA	exon (NM_015462, exon 1 of 18)	exon (NM_015462, exon 1 of 18)	104	NM_015462	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
149704	chr21	34020321	34020630	+	0	NA	Intergenic	Intergenic	44093	NR_134561	101928126		NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
73439	chr15	43204201	43204630	+	0	NA	intron (NM_001114134, intron 10 of 12)	L2c|LINE|L2	16603	NM_000119	2038		NM_000119	ENSG00000166947	EPB42	PA|SPH5	erythrocyte membrane protein band 4.2	protein-coding
29879	chr10	72754001	72754200	+	0	NA	intron (NR_073062, intron 3 of 9)	MER91A|DNA|hAT-Tip100	33071	NR_039823	100616286		NR_039823	ENSG00000266719	MIR4676	-	microRNA 4676	ncRNA
114181	chr19	11386951	11387450	+	0	NA	Intergenic	L2a|LINE|L2	-2886	NR_033663	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
100603	chr17	63445251	63448530	+	0	NA	promoter-TSS (NM_001915)	promoter-TSS (NM_001915)	-584	NM_001915	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
127425	chr2	42132551	42134130	+	0	NA	Intergenic	Intergenic	-36013	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
202786	chr6	159097051	159097680	+	0	NA	Intergenic	Intergenic	-52213	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
226820	chr9	77475921	77476680	+	0	NA	intron (NR_121184, intron 2 of 4)	intron (NR_121184, intron 2 of 4)	28651	NR_121184	101927422		NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
186739	chr5	139299401	139300480	+	0	NA	intron (NM_001194956, intron 1 of 13)	5S|rRNA|rRNA	6190	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
212442	chr7	128400771	128401030	+	0	NA	intron (NM_183243, intron 4 of 14)	intron (NM_183243, intron 4 of 14)	5095	NM_001142575	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
7873	chr1	36395771	36396430	+	0	NA	intron (NM_032881, intron 1 of 1)	AluY|SINE|Alu	1808	NM_032881	84967		NM_032881	ENSG00000181817	LSM10	MST074|MSTP074	LSM10, U7 small nuclear RNA associated	protein-coding
207978	chr7	55367651	55367750	+	0	NA	intron (NM_018697, intron 1 of 8)	AluSz6|SINE|Alu	2363	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
51633	chr12	53001871	53002400	+	0	NA	Intergenic	L2a|LINE|L2	-4321	NM_001300821	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
20787	chr1	201084251	201084750	+	0	NA	intron (NM_000069, intron 9 of 43)	intron (NM_000069, intron 9 of 43)	27926	NM_000069	779		NM_000069	ENSG00000081248	CACNA1S	CACNL1A3|CCHL1A3|CMYP18|Cav1.1|DHPRM|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP	calcium voltage-gated channel subunit alpha1 S	protein-coding
164782	chr3	69205421	69205780	+	0	NA	intron (NM_015123, intron 11 of 22)	MER20|DNA|hAT-Charlie	-83005	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
67811	chr14	73778371	73778730	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	8658	NM_001043318	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
107010	chr18	32071051	32071350	+	0	NA	3' UTR (NM_017831, exon 6 of 6)	3' UTR (NM_017831, exon 6 of 6)	-20674	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
217511	chr8	29171821	29172080	+	0	NA	intron (NM_015254, intron 10 of 39)	AluSx|SINE|Alu	91120	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
47908	chr12	6758501	6758730	+	0	NA	Intergenic	L2a|LINE|L2	-5474	NM_001382225	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
61370	chr13	51422351	51423400	+	0	NA	intron (NM_001306091, intron 5 of 19)	intron (NM_001306091, intron 5 of 19)	30161	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
100953	chr17	64494651	64495700	+	0	NA	intron (NM_007215, intron 1 of 7)	AluY|SINE|Alu	1879	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
194562	chr6	33395751	33396050	+	0	NA	intron (NM_002263, intron 1 of 10).3	intron (NM_002263, intron 1 of 10).3	4077	NM_002263	3833		NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
217836	chr8	37697921	37698830	+	0	NA	exon (NM_025069, exon 2 of 2)	exon (NM_025069, exon 2 of 2)	2593	NM_025069	80139		NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
2889	chr1	11650001	11651250	+	0	NA	exon (NM_012168, exon 2 of 6)	exon (NM_012168, exon 2 of 6)	-3782	NM_183412	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
52605	chr12	56232671	56232830	+	0	NA	exon (NM_001135195, exon 3 of 11)	exon (NM_001135195, exon 3 of 11)	2033	NM_001135195	283375		NM_173596	ENSG00000139540	SLC39A5	LZT-Hs7|MYP24|ZIP5	solute carrier family 39 member 5	protein-coding
135926	chr2	171811351	171811450	+	0	NA	intron (NR_047549, intron 10 of 16)	intron (NR_047549, intron 10 of 16)	82844	NM_003705	8604		NM_003705	ENSG00000115840	SLC25A12	AGC1|ARALAR|DEE39|EIEE39	solute carrier family 25 member 12	protein-coding
153349	chr22	24420201	24420430	+	0	NA	intron (NR_103546, intron 18 of 19)	intron (NR_103546, intron 18 of 19)	-3282	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
123085	chr19	51395101	51396300	+	0	NA	Intergenic	MIRb|SINE|MIR	-5109	NR_126530	147646		NM_001193623	ENSG00000262874	C19orf84	-	chromosome 19 open reading frame 84	protein-coding
162960	chr3	49675671	49676280	+	0	NA	intron (NM_001640, intron 5 of 21)	intron (NM_001640, intron 5 of 21)	1624	NM_001640	327		NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
174930	chr4	49122401	49122850	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	135983	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
100704	chr17	63837621	63838580	+	0	NA	intron (NM_001098426, intron 1 of 12)	intron (NM_001098426, intron 1 of 12)	628	NM_001330440	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
136291	chr2	174752271	174752900	+	0	NA	intron (NM_001039523, intron 7 of 9)	AluJb|SINE|Alu	11887	NM_001039523	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
217497	chr8	29055601	29055800	+	0	NA	Intergenic	Intergenic	164386	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
93863	chr17	21024821	21025080	+	0	NA	intron (NM_015276, intron 2 of 12)	AluJb|SINE|Alu	18061	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
36777	chr11	9412751	9413050	+	0	NA	intron (NM_006391, intron 4 of 24)	AluY|SINE|Alu	-15866	NR_002962	677808		NR_002962	ENSG00000201998	SNORA23	ACA23	small nucleolar RNA, H/ACA box 23	snoRNA
94613	chr17	29779251	29779930	+	0	NA	intron (NM_033389, intron 2 of 14)	AluSx3|SINE|Alu	-18158	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
149603	chr21	33331901	33332300	+	0	NA	intron (NM_001384503, intron 1 of 10)	L1M2a|LINE|L1	7130	NM_001384503	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
211286	chr7	103076701	103076930	+	0	NA	intron (NM_001161010, intron 2 of 5)	AluSx1|SINE|Alu	1675	NM_001161010	83787		NM_031905	ENSG00000170632	ARMC10	PNAS-112|PNAS112|PSEC0198|SVH	armadillo repeat containing 10	protein-coding
125776	chr2	23684621	23684880	+	0	NA	intron (NM_052920, intron 6 of 13)	intron (NM_052920, intron 6 of 13)	242373	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
169321	chr3	159762971	159763400	+	0	NA	intron (NM_001197108, intron 1 of 6)	CpG	5427	NR_121669	100874433		NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA
53740	chr12	68639371	68640350	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluSc|SINE|Alu	-12485	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
176071	chr4	82796801	82797000	+	0	NA	intron (NM_024906, intron 1 of 3)	intron (NM_024906, intron 1 of 3)	1896	NM_001037582	79966		NM_024906	ENSG00000145284	SCD5	ACOD4|DFNA79|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
232110	chr9	133713051	133713350	+	0	NA	intron (NM_001134707, intron 8 of 20)	intron (NM_001134707, intron 8 of 20)	25152	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
180394	chr5	9545971	9546530	+	0	NA	promoter-TSS (NR_045196)	promoter-TSS (NR_045196)	50	NR_045196	100505806		NR_045196	ENSG00000250786	SNHG18	-	small nucleolar RNA host gene 18	ncRNA
132616	chr2	108610751	108611500	+	0	NA	intron (NM_001193482, intron 1 of 9)	MIR|SINE|MIR	3978	NM_001193482	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
195073	chr6	35524751	35525450	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-12204	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
194475	chr6	33210851	33211230	+	0	NA	intron (NM_002931, intron 4 of 6).4	MIR|SINE|MIR	2540	NM_002931	6015		NM_002931	ENSG00000204227	RING1	RING1A|RNF1	ring finger protein 1	protein-coding
191156	chr6	4778201	4778400	+	0	NA	intron (NM_001368127, intron 1 of 5)	intron (NM_001368127, intron 1 of 5)	1896	NM_001368126	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
3527	chr1	16071071	16071230	+	0	NA	intron (NM_182623, intron 1 of 6)	intron (NM_182623, intron 1 of 6)	2501	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
23154	chr1	226727711	226728120	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	11260	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
12968	chr1	110889621	110889880	+	0	NA	intron (NM_001040033, intron 2 of 8)	MIRb|SINE|MIR	16602	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
9590	chr1	52055891	52057180	+	0	NA	promoter-TSS (NR_046405)	promoter-TSS (NR_046405)	240	NM_152265	91408		NM_152265	ENSG00000134717	BTF3L4	-	basic transcription factor 3 like 4	protein-coding
4169	chr1	19394871	19395230	+	0	NA	intron (NM_001313932, intron 2 of 4)	MER47B|DNA|TcMar-Tigger	82724	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
219699	chr8	80890021	80890350	+	0	NA	Intergenic	L2a|LINE|L2	-15404	NM_001033723	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
149953	chr21	36361621	36361880	+	0	NA	intron (NM_001320445, intron 11 of 15)	AluSx1|SINE|Alu	-23642	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
218216	chr8	42023571	42024500	+	0	NA	intron (NM_001305878, intron 2 of 13)	Tigger3b|DNA|TcMar-Tigger	-27715	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
3825	chr1	16874971	16875730	+	0	NA	Intergenic	Intergenic	3124	NR_160657	112267871		NR_160657	ENSG00000228549	LINC03126	-	long intergenic non-protein coding RNA 3126	ncRNA
186601	chr5	138514221	138514480	+	0	NA	intron (NM_001291974, intron 4 of 10)	AluJb|SINE|Alu	27361	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
134852	chr2	148666621	148666880	+	0	NA	intron (NM_015630, intron 1 of 13)	MER5A|DNA|hAT-Charlie	21999	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
229121	chr9	114417821	114418280	+	0	NA	intron (NM_015404, intron 7 of 11)	MIR3|SINE|MIR	8118	NM_001346890	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
70146	chr14	100284921	100286380	+	0	NA	Intergenic	CpG	8293	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
221479	chr8	124485901	124486100	+	0	NA	exon (NM_007218, exon 2 of 2)	exon (NM_007218, exon 2 of 2)	11120	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
165456	chr3	98592801	98594130	+	0	NA	exon (NM_000097, exon 1 of 7)	exon (NM_000097, exon 1 of 7)	146	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
237239	chrX	109990771	109991130	+	0	NA	Intergenic	Intergenic	-11685	NM_001353851	84187		NM_017698	ENSG00000157600	TMEM164	bB360B22.3	transmembrane protein 164	protein-coding
51354	chr12	51593201	51593800	+	0	NA	intron (NM_001330260, intron 1 of 26)	intron (NM_001330260, intron 1 of 26)	2264	NM_001177984	6334		NM_014191	ENSG00000196876	SCN8A	BFIS5|CERIII|CIAT|DEE13|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4	sodium voltage-gated channel alpha subunit 8	protein-coding
107237	chr18	37299601	37299800	+	0	NA	intron (NR_148523, intron 3 of 13)	intron (NR_148523, intron 3 of 13)	25240	NR_134588	105372068		NR_134588	ENSG00000267202	LOC105372068	-	uncharacterized LOC105372068	ncRNA
90249	chr17	793151	793800	+	0	NA	TTS (NM_001317947)	TTS (NM_001317947)	11122	NM_018146	55178		NM_018146	ENSG00000171861	MRM3	RMTL1|RNMTL1	mitochondrial rRNA methyltransferase 3	protein-coding
153043	chr22	23273601	23273800	+	0	NA	exon (NM_004327, exon 8 of 23)	exon (NM_004327, exon 8 of 23)	10933	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
32745	chr10	104314301	104314850	+	0	NA	exon (NM_001272013, exon 2 of 2)	exon (NM_001272013, exon 2 of 2)	-8789	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
186951	chr5	139655921	139656430	+	0	NA	intron (NM_001317205, intron 1 of 2)	intron (NM_001317205, intron 1 of 2)	-3380	NM_001317207	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
75694	chr15	67838651	67838950	+	0	NA	promoter-TSS (NR_120345)	promoter-TSS (NR_120345)	79	NR_120345	101929076		NR_120345	ENSG00000245719	SKOR1-AS1	-	SKOR1 antisense RNA 1	ncRNA
49651	chr12	28639751	28640000	+	0	NA	Intergenic	L1PA5|LINE|L1	-449137	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
91466	chr17	4840571	4841130	+	0	NA	intron (NM_015716, intron 1 of 30)	intron (NM_015716, intron 1 of 30)	7510	NM_001024937	50488		NM_015716	ENSG00000141503	MINK1	B55|MAP4K6|MEKKK 6|MINK|YSK2|ZC3	misshapen like kinase 1	protein-coding
195379	chr6	36691071	36691550	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-6516	NM_001257357	401258		NM_207498	ENSG00000255587	RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
8304	chr1	40056371	40056800	+	0	NA	intron (NM_001350484, intron 2 of 13)	AluJb|SINE|Alu	15559	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
88268	chr16	82945521	82946000	+	0	NA	intron (NM_001220490, intron 2 of 12)	intron (NM_001220490, intron 2 of 12)	44538	NR_110937	101928417		NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
15847	chr1	151400771	151400930	+	0	NA	intron (NM_002796, intron 4 of 6)	intron (NM_002796, intron 4 of 6)	1277	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
89134	chr16	88511271	88511730	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	19553	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
132134	chr2	101710401	101711530	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	12700	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
200352	chr6	134052151	134052710	+	0	NA	exon (NM_145176, exon 1 of 5)	exon (NM_145176, exon 1 of 5)	194	NM_145176	154091		NM_145176	ENSG00000146411	SLC2A12	GLUT12|GLUT8	solute carrier family 2 member 12	protein-coding
74221	chr15	56316551	56316650	+	0	NA	intron (NM_001385050, intron 1 of 7)	L1PA2|LINE|L1	-48826	NR_169560	374618		NM_198524	ENSG00000151575	TEX9	-	testis expressed 9	protein-coding
193052	chr6	28634101	28634300	+	0	NA	Intergenic	Intergenic	-18023	NM_001329616	114821		NM_052923	ENSG00000232040	SCAND3	Buster4|FAM200D|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
35006	chr11	534671	536700	+	0	NA	promoter-TSS (NM_005343)	promoter-TSS (NM_005343)	-109	NM_001318054	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
38023	chr11	35133751	35133850	+	0	NA	intron (NR_120528, intron 2 of 2)	(GTG)n|Simple_repeat|Simple_repeat	4232	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
151396	chr21	45983001	45983530	+	0	NA	intron (NM_001848, intron 2 of 34)	intron (NM_001848, intron 2 of 34)	1495	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
27911	chr10	41896021	41896330	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	471870	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
111316	chr19	3617321	3617800	+	0	NA	intron (NM_021231, intron 6 of 10)	intron (NM_021231, intron 6 of 10)	9230	NM_001080543	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
108817	chr18	78659821	78660100	+	0	NA	Intergenic	Intergenic	-320315	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
56762	chr12	120158501	120158930	+	0	NA	intron (NM_006836, intron 24 of 57)	intron (NM_006836, intron 24 of 57)	-3216	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
238819	chrX	154426051	154426350	+	0	NA	intron (NR_103768, intron 1 of 1)	AluSx|SINE|Alu	2279	NR_103768	158960		NR_103768	ENSG00000197180	ATP6AP1-DT	CH17-340M24.3	ATP6AP1 divergent transcript	ncRNA
68417	chr14	81178871	81179030	+	0	NA	3' UTR (NM_201595, exon 9 of 9)	3' UTR (NM_201595, exon 9 of 9)	23884	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
57299	chr12	121655001	121655200	+	0	NA	intron (NM_173855, intron 2 of 5)	AluSz|SINE|Alu	14554	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
34411	chr10	132399351	132399880	+	0	NA	intron (NM_138499, intron 1 of 2)	intron (NM_138499, intron 1 of 2)	2415	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
214715	chr7	151008071	151009480	+	0	NA	intron (NM_000603, intron 17 of 26)	CpG	14971	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
82379	chr16	16040951	16041650	+	0	NA	intron (NM_004996, intron 7 of 30)	intron (NM_004996, intron 7 of 30)	91684	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
6899	chr1	31587801	31588180	+	0	NA	TTS (NM_022164)	TTS (NM_022164)	9845	NM_001204415	64129		NM_022164	ENSG00000142910	TINAGL1	ARG1|LCN7|LIECG3|TINAGRP	tubulointerstitial nephritis antigen like 1	protein-coding
12324	chr1	100995701	100995900	+	0	NA	intron (NM_015958, intron 5 of 7)	intron (NM_015958, intron 5 of 7)	29984	NM_001077395	51611		NM_015958	ENSG00000117543	DPH5	AD-018|CGI-30|HSPC143|NEDSFF|NPD015	diphthamide biosynthesis 5	protein-coding
118386	chr19	35729621	35730080	+	0	NA	intron (NM_014727, intron 22 of 36)	intron (NM_014727, intron 22 of 36)	11847	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
92664	chr17	10729451	10730450	+	0	NA	promoter-TSS (NM_001004313)	promoter-TSS (NM_001004313)	73	NM_001004313	388335		NM_001004313	ENSG00000187824	TMEM220	-	transmembrane protein 220	protein-coding
50506	chr12	47814721	47815950	+	0	NA	intron (NR_160436, intron 1 of 25)	(CA)n|Simple_repeat|Simple_repeat	4568	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
207301	chr7	44017521	44017950	+	0	NA	intron (NR_003655, intron 1 of 15)	MER20|DNA|hAT-Charlie	1459	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
69979	chr14	99944451	99944950	+	0	NA	Intergenic	Intergenic	-26722	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
156539	chr22	41428021	41428280	+	0	NA	Intergenic	AluJb|SINE|Alu	18651	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
162648	chr3	48845071	48845230	+	0	NA	intron (NM_004157, intron 1 of 10)	MIRb|SINE|MIR	2724	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
207034	chr7	38908571	38909480	+	0	NA	intron (NM_080631, intron 1 of 27)	intron (NM_080631, intron 1 of 27)	166	NM_014396	27072		NM_014396	ENSG00000006715	VPS41	HVPS41|HVSP41|SCAR29|hVps41p	VPS41 subunit of HOPS complex	protein-coding
95983	chr17	39169671	39169830	+	0	NA	Intergenic	Intergenic	-3589	NM_001143968	390790		NM_001143968	ENSG00000141748	ARL5C	ARL12	ADP ribosylation factor like GTPase 5C	protein-coding
178257	chr4	143538921	143539500	+	0	NA	intron (NM_003601, intron 13 of 23)	MLT1J2|LTR|ERVL-MaLR	-20262	NR_003675	441046		NM_001011539	ENSG00000251600	GUSBP5	GYPELOC441046	GUSB pseudogene 5	pseudo
186865	chr5	139479721	139480300	+	0	NA	intron (NM_198282, intron 5 of 7)	AluSx1|SINE|Alu	2748	NM_001367258	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
21462	chr1	205568671	205569580	+	0	NA	exon (NM_181644, exon 1 of 10)	exon (NM_181644, exon 1 of 10)	111	NM_181644	148808		NM_181644	ENSG00000174514	MFSD4A	MFSD4|SLC60A1|UNQ3064	major facilitator superfamily domain containing 4A	protein-coding
33600	chr10	119533021	119533680	+	0	NA	intron (NM_001005339, intron 1 of 4)	AluSg|SINE|Alu	3183	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
101887	chr17	74352771	74352930	+	0	NA	exon (NM_153209, exon 15 of 20)	exon (NM_153209, exon 15 of 20)	9018	NM_001080466	388419		NM_001080466	ENSG00000204347	BTBD17	BTBD17A|LGALS3BPL|TANGO10A	BTB domain containing 17	protein-coding
231889	chr9	133032271	133032430	+	0	NA	intron (NM_001286709, intron 1 of 8)	LTR10B|LTR|ERV1	1353	NM_012087	9328		NM_012087	ENSG00000148308	GTF3C5	TFIIIC63|TFIIICepsilon|TFiiiC2-63	general transcription factor IIIC subunit 5	protein-coding
92190	chr17	7832901	7833100	+	0	NA	intron (NM_020877, intron 84 of 85)	intron (NM_020877, intron 84 of 85)	-6906	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
79824	chr16	1428251	1429100	+	0	NA	Intergenic	CpG	-2403	NM_001365310	105371045		NM_001365310	ENSG00000284395	PERCC1	DIAR11|ICR|gs104	proline and glutamate rich with coiled coil 1	protein-coding
112137	chr19	5609621	5610380	+	0	NA	exon (NM_014649, exon 9 of 21)	exon (NM_014649, exon 9 of 21)	12776	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
158595	chr3	4807271	4807630	+	0	NA	intron (NM_002222, intron 51 of 57)	MIR|SINE|MIR	-55860	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
118515	chr19	35986621	35987500	+	0	NA	Intergenic	Intergenic	-8128	NM_001042631	644096		NM_001042631	ENSG00000205138	SDHAF1	LYRM8|MC2DN2	succinate dehydrogenase complex assembly factor 1	protein-coding
15917	chr1	151715721	151715980	+	0	NA	5' UTR (NM_001172648, exon 1 of 13)	5' UTR (NM_001172648, exon 1 of 13)	953	NM_001172649	11189		NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP Elav-like family member 3	protein-coding
164426	chr3	58994821	58995080	+	0	NA	intron (NR_147235, intron 4 of 6)	intron (NR_147235, intron 4 of 6)	55075	NR_147234	200844		NM_198463	ENSG00000163689	CFAP20DC	C3orf67	CFAP20 domain containing	protein-coding
1549	chr1	3479201	3479680	+	0	NA	intron (NM_014448, intron 12 of 14)	intron (NM_014448, intron 12 of 14)	24775	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
49709	chr12	31120851	31121230	+	0	NA	intron (NR_153414, intron 38 of 44)	intron (NR_153414, intron 38 of 44)	47180	NM_001257145	1663		NM_004399	ENSG00000013573	DDX11	CHL1|CHLR1|KRG2|WABS	DEAD/H-box helicase 11	protein-coding
29686	chr10	72051971	72052130	+	0	NA	Intergenic	Intergenic	36501	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
60507	chr13	41339471	41339830	+	0	NA	intron (NM_024561, intron 9 of 19)	AluSx1|SINE|Alu	-27612	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
9328	chr1	46599351	46600050	+	0	NA	intron (NR_165250, intron 1 of 9)	MIRb|SINE|MIR	4568	NM_001377337	8569		NM_003684	ENSG00000079277	MKNK1	MNK1	MAPK interacting serine/threonine kinase 1	protein-coding
135822	chr2	170408951	170409390	+	0	NA	intron (NR_045682, intron 22 of 35)	intron (NR_045682, intron 22 of 35)	-58227	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
703	chr1	1409071	1409730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2107	NM_001318485	55052		NM_017971	ENSG00000242485	MRPL20	L20mt|MRP-L20|bL20m	mitochondrial ribosomal protein L20	protein-coding
217932	chr8	38090371	38091050	+	0	NA	Intergenic	AluY|SINE|Alu	-14783	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
170986	chr3	194634651	194634950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1381	NM_138399	93109		NM_138399	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
92165	chr17	7706801	7707130	+	0	NA	intron (NM_001406, intron 1 of 4)	intron (NM_001406, intron 1 of 4)	1763	NM_001406	1949		NM_001406	ENSG00000108947	EFNB3	EFL6|EPLG8|LERK8	ephrin B3	protein-coding
133182	chr2	112923771	112924330	+	0	NA	Intergenic	MIRc|SINE|MIR	8857	NM_173205	27178		NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-23|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
111585	chr19	4081021	4081800	+	0	NA	Intergenic	Intergenic	-14511	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
520	chr1	1215871	1216330	+	0	NA	TTS (NM_016176)	TTS (NM_016176)	-1947	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
74420	chr15	59097701	59097900	+	0	NA	TTS (NM_001270530)	TTS (NM_001270530)	-7346	NM_004701	9133		NM_004701	ENSG00000157456	CCNB2	HsT17299	cyclin B2	protein-coding
58416	chr12	131917901	131918130	+	0	NA	intron (NM_003565, intron 22 of 27)	intron (NM_003565, intron 22 of 27)	-11261	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
34210	chr10	129466301	129467980	+	0	NA	promoter-TSS (NM_002412)	promoter-TSS (NM_002412)	-101	NM_002412	4255		NM_002412	ENSG00000170430	MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
212705	chr7	129778201	129778400	+	0	NA	Intergenic	Intergenic	-3286	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
228421	chr9	99457751	99457850	+	0	NA	Intergenic	(GAGGG)n|Simple_repeat|Simple_repeat	-82543	NR_102271	100996569		NR_102270	ENSG00000271086	NAMA	-	non-protein coding RNA, associated with MAP kinase pathway and growth arrest	ncRNA
202422	chr6	157898071	157898430	+	0	NA	intron (NM_016224, intron 5 of 17)	intron (NM_016224, intron 5 of 17)	75004	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
166724	chr3	121647201	121647400	+	0	NA	intron (NM_005335, intron 4 of 13)	intron (NM_005335, intron 4 of 13)	13603	NM_005335	3059		NM_005335	ENSG00000180353	HCLS1	CTTNL|HS1|lckBP1|p75	hematopoietic cell-specific Lyn substrate 1	protein-coding
80089	chr16	2003601	2004700	+	0	NA	intron (NM_178167, intron 3 of 13)	CpG	5671	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
168048	chr3	136928221	136928830	+	0	NA	intron (NM_001291999, intron 2 of 3)	intron (NM_001291999, intron 2 of 3)	-1977	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
75160	chr15	64633971	64636130	+	0	NA	intron (NM_015042, intron 3 of 9)	intron (NM_015042, intron 3 of 9)	68231	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
21590	chr1	206505371	206506100	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-1796	NM_182664	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
8066	chr1	38977121	38978750	+	0	NA	Intergenic	LTR12|LTR|ERV1	-13309	NM_001136275	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
215808	chr8	2454901	2455500	+	0	NA	Intergenic	CpG	168165	NR_125423	101927815		NR_125423	ENSG00000254319	LINC03021	-	long intergenic non-protein coding RNA 3021	ncRNA
69095	chr14	92135301	92135530	+	0	NA	exon (NM_001322270, exon 6 of 15)	exon (NM_001322270, exon 6 of 15)	13446	NM_017437	53981		NM_017437	ENSG00000165934	CPSF2	CPSF100	cleavage and polyadenylation specific factor 2	protein-coding
117039	chr19	18933851	18933950	+	0	NA	intron (NM_001145724, intron 3 of 7)	AluSz|SINE|Alu	5149	NM_001145724	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
184296	chr5	96823871	96824550	+	0	NA	Intergenic	Intergenic	-10065	NM_001198541	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
75408	chr15	65766921	65767330	+	0	NA	intron (NM_001376919, intron 1 of 31)	L2c|LINE|L2	25168	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
220934	chr8	108441121	108441580	+	0	NA	Intergenic	L2a|LINE|L2	-2233	NM_001329493	9694		NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
218883	chr8	60550771	60550930	+	0	NA	intron (NM_001242644, intron 1 of 6)	L2a|LINE|L2	33863	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
204860	chr7	5828971	5829330	+	0	NA	intron (NR_023382, intron 1 of 6)	intron (NR_023382, intron 1 of 6)	5990	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
156300	chr22	40525251	40526100	+	0	NA	intron (NR_109965, intron 3 of 3)	intron (NR_109965, intron 3 of 3)	3875	NR_109965	101927257		NR_109965	ENSG00000232564	MRTFA-AS1	-	MRTFA antisense RNA 1	ncRNA
84238	chr16	29994401	29995600	+	0	NA	intron (NM_003609, intron 3 of 6)	intron (NM_003609, intron 3 of 6)	617	NM_003609	8479		NM_003609	ENSG00000149929	HIRIP3	-	HIRA interacting protein 3	protein-coding
127359	chr2	39215021	39215280	+	0	NA	intron (NM_001009565, intron 2 of 7)	L1ME4a|LINE|L1	14438	NM_001346911	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
148772	chr21	8202071	8202980	+	0	NA	intron (NR_038958, intron 2 of 6)	(TTTC)n|Simple_repeat|Simple_repeat	-2790	NR_128716	103504739		NR_128716	ENSG00000277379	MIR6724-3	hsa-mir-6724-3	microRNA 6724-3	ncRNA
88101	chr16	81524171	81525000	+	0	NA	intron (NM_030629, intron 1 of 20)	MIR3|SINE|MIR	-9317	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
27148	chr10	28331871	28332250	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	-28996	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
99682	chr17	50757721	50757980	+	0	NA	Intergenic	AluSx3|SINE|Alu	9668	NM_001358683	55018		NM_017928	ENSG00000167117	ANKRD40CL	C17orf73|LINC00483	ANKRD40 C-terminal like	protein-coding
154974	chr22	37284701	37285680	+	0	NA	intron (NM_013385, intron 1 of 12)	intron (NM_013385, intron 1 of 12)	2682	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
199529	chr6	118748201	118748400	+	0	NA	Intergenic	Intergenic	-34408	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
211813	chr7	108001421	108001880	+	0	NA	exon (NM_002291, exon 3 of 34)	exon (NM_002291, exon 3 of 34)	1511	NM_002291	3912		NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding
21565	chr1	206408851	206408950	+	0	NA	intron (NM_001377446, intron 10 of 21)	intron (NM_001377446, intron 10 of 21)	-61576	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
75195	chr15	64809171	64809330	+	0	NA	Intergenic	MIR|SINE|MIR	16397	NM_001286496	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
166623	chr3	119506821	119507300	+	0	NA	intron (NM_016589, intron 4 of 6)	L1MCa|LINE|L1	8513	NM_016589	51300		NM_016589	ENSG00000113845	TIMMDC1	C3orf1|MC1DN31	translocase of inner mitochondrial membrane domain containing 1	protein-coding
181941	chr5	54993421	54993830	+	0	NA	Intergenic	Intergenic	-8032	NM_001135604	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
189009	chr5	168575151	168575730	+	0	NA	intron (NM_024594, intron 1 of 6)	intron (NM_024594, intron 1 of 6)	3928	NM_024594	79646		NM_024594	ENSG00000120137	PANK3	-	pantothenate kinase 3	protein-coding
69060	chr14	91890301	91891130	+	0	NA	intron (NM_001384161, intron 7 of 12)	intron (NM_001384161, intron 7 of 12)	-23179	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
210631	chr7	100455351	100455850	+	0	NA	Intergenic	AluSz|SINE|Alu	8660	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
146301	chr20	49169401	49169800	+	0	NA	intron (NM_001322930, intron 1 of 12)	intron (NM_001322930, intron 1 of 12)	18734	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
130360	chr2	85024251	85024650	+	0	NA	intron (NM_020122, intron 1 of 6)	AluSx1|SINE|Alu	42897	NR_146453	100996478		NR_146453	ENSG00000260840	LINC01964	-	long intergenic non-protein coding RNA 1964	ncRNA
146034	chr20	47319001	47319400	+	0	NA	non-coding (NR_024594, exon 1 of 1)	non-coding (NR_024594, exon 1 of 1)	698	NR_024594	100131496		NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
201205	chr6	143513221	143513750	+	0	NA	Intergenic	Intergenic	-1765	NM_032020	2519		NM_032020	ENSG00000001036	FUCA2	dJ20N2.5	alpha-L-fucosidase 2	protein-coding
88808	chr16	87399771	87400330	+	0	NA	intron (NM_022818, intron 2 of 3)	AluSc|SINE|Alu	7714	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
27841	chr10	38528301	38528500	+	0	NA	Intergenic	Intergenic	100254	NR_024497	399744		NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
39547	chr11	61114801	61115430	+	0	NA	intron (NM_001346456, intron 2 of 10)	intron (NM_001346456, intron 2 of 10)	12626	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
30658	chr10	80476071	80477230	+	0	NA	intron (NM_001351272, intron 2 of 9)	AluY|SINE|Alu	8409	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
4838	chr1	23636501	23636700	+	0	NA	intron (NR_167910, intron 4 of 5)	intron (NR_167910, intron 4 of 5)	9266	NR_167904	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
84989	chr16	31463371	31463530	+	0	NA	intron (NM_024742, intron 3 of 3)	intron (NM_024742, intron 3 of 3)	3949	NM_001105247	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
89635	chr16	89328171	89328330	+	0	NA	intron (NR_045839, intron 2 of 9)	L1MD2|LINE|L1	7798	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
184268	chr5	96721451	96721950	+	0	NA	intron (NM_173060, intron 1 of 28)	intron (NM_173060, intron 1 of 28)	19040	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
177477	chr4	113825171	113825600	+	0	NA	Intergenic	Intergenic	-63458	NM_172114	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
33973	chr10	124655771	124655930	+	0	NA	intron (NM_014661, intron 4 of 4)	L2a|LINE|L2	-48178	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
46189	chr11	123407451	123407750	+	0	NA	intron (NM_001367418, intron 1 of 19)	intron (NM_001367418, intron 1 of 19)	-22669	NM_001354837	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
134606	chr2	144380071	144380230	+	0	NA	Intergenic	Intergenic	-47081	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
36117	chr11	3093301	3093500	+	0	NA	intron (NM_145638, intron 16 of 20)	intron (NM_145638, intron 16 of 20)	-35977	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
35344	chr11	1154251	1154550	+	0	NA	Intergenic	Intergenic	-3553	NM_001304359	4586		NM_017511	ENSG00000215182	MUC5AC	MUC5|TBM|leB|mucin	mucin 5AC, oligomeric mucus/gel-forming	protein-coding
28447	chr10	48981401	48982130	+	0	NA	intron (NM_020945, intron 61 of 61)	intron (NM_020945, intron 61 of 61)	3822	NR_036182	100422895		NR_036182	ENSG00000264800	MIR4294	-	microRNA 4294	ncRNA
127053	chr2	37249601	37249800	+	0	NA	TTS (NM_001350027)	TTS (NM_001350027)	18042	NR_146404	55471		NM_018607	ENSG00000003509	NDUFAF7	C2orf56|MidA|PRO1853	NADH:ubiquinone oxidoreductase complex assembly factor 7	protein-coding
131086	chr2	88934101	88934300	+	0	NA	Intergenic	Intergenic	121830	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
50352	chr12	47190271	47191000	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	2823	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
234100	chrX	9355701	9356100	+	0	NA	Intergenic	MIR|SINE|MIR	-107395	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
140694	chr2	234286451	234286550	+	0	NA	Intergenic	Intergenic	168095	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
154038	chr22	30488201	30488600	+	0	NA	TTS (NM_001161368)	TTS (NM_001161368)	-6644	NR_001580	376844		NR_001580		SDC4P	-	syndecan 4 pseudogene	pseudo
106590	chr18	22173971	22174130	+	0	NA	intron (NM_005257, intron 2 of 6)	intron (NM_005257, intron 2 of 6)	4461	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
120910	chr19	45613921	45614950	+	0	NA	intron (NR_147903, intron 18 of 19)	intron (NR_147903, intron 18 of 19)	-12223	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
216091	chr8	11013771	11014130	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	21352	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
72544	chr15	34336821	34338310	+	0	NA	promoter-TSS (NM_001042497)	promoter-TSS (NM_001042497)	216	NM_001042496	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
67941	chr14	74773121	74773380	+	0	NA	intron (NM_019589, intron 1 of 20)	AluY|SINE|Alu	9934	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
117333	chr19	19525121	19525550	+	0	NA	intron (NM_015965, intron 1 of 4)	intron (NM_015965, intron 1 of 4)	-3576	NM_001190328	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
109793	chr19	1150351	1150450	+	0	NA	intron (NM_014963, intron 2 of 31)	intron (NM_014963, intron 2 of 31)	-18179	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
220078	chr8	93991051	93992180	+	0	NA	Intergenic	Intergenic	74668	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
93203	chr17	17818951	17819050	+	0	NA	intron (NM_001321096, intron 5 of 18)	intron (NM_001321096, intron 5 of 18)	4630	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
14687	chr1	145859701	145860750	+	0	NA	Intergenic	Intergenic	-1144	NM_006099	10401		NM_006099	ENSG00000131788	PIAS3	ZMIZ5	protein inhibitor of activated STAT 3	protein-coding
134956	chr2	151827731	151829130	+	0	NA	promoter-TSS (NM_001037174)	promoter-TSS (NM_001037174)	-9	NM_001037174	26225		NM_012097	ENSG00000162980	ARL5A	ARFLP5|ARL5	ADP ribosylation factor like GTPase 5A	protein-coding
146978	chr20	52984101	52984300	+	0	NA	intron (NM_173485, intron 1 of 2)	L2a|LINE|L2	11842	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
162254	chr3	47286321	47287380	+	0	NA	intron (NM_025010, intron 1 of 9)	HAL1|LINE|L1	3906	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
138016	chr2	201272521	201272930	+	0	NA	non-coding (NR_111983, exon 4 of 9)	non-coding (NR_111983, exon 4 of 9)	12189	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
196146	chr6	42443401	42444750	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	7976	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
23655	chr1	231036401	231036700	+	0	NA	intron (NM_198552, intron 1 of 1)	intron (NM_198552, intron 1 of 1)	3704	NM_198552	375061		NM_198552	ENSG00000182118	FAM89A	C1orf153	family with sequence similarity 89 member A	protein-coding
123804	chr19	55162401	55163230	+	0	NA	intron (NM_178837, intron 4 of 11)	AluJr4|SINE|Alu	3798	NM_001256715	352909		NM_178837	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	dynein axonemal assembly factor 3	protein-coding
113851	chr19	10641951	10642500	+	0	NA	intron (NM_001363611, intron 20 of 22)	intron (NM_001363611, intron 20 of 22)	11647	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
37064	chr11	12357871	12358030	+	0	NA	intron (NM_032867, intron 8 of 8)	intron (NM_032867, intron 8 of 8)	-19621	NM_018222	55742		NM_018222	ENSG00000197702	PARVA	CH-ILKBP|MXRA2	parvin alpha	protein-coding
165571	chr3	101548971	101549130	+	0	NA	Intergenic	LTR26C|LTR|ERV1	-12818	NM_017819	54931		NM_017819	ENSG00000174173	TRMT10C	COXPD30|HNYA|MRPP1|RG9MTD1	tRNA methyltransferase 10C, mitochondrial RNase P subunit	protein-coding
173764	chr4	16898571	16898930	+	0	NA	promoter-TSS (NM_001304435)	promoter-TSS (NM_001304435)	59	NM_001304435	9079		NM_001290	ENSG00000169744	LDB2	CLIM1|LDB-2|LDB1	LIM domain binding 2	protein-coding
179679	chr4	190049451	190050030	+	0	NA	Intergenic	Intergenic	-14762	NR_121644	100419743		NR_121644	ENSG00000281591	DBET	DBE-T|DUX4L30	D4Z4 binding element transcript	ncRNA
189303	chr5	172131151	172131650	+	0	NA	intron (NM_005990, intron 2 of 18)	L4_C_Mam|LINE|RTE-X	56824	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
197756	chr6	87203451	87204030	+	0	NA	intron (NM_015021, intron 1 of 7)	intron (NM_015021, intron 1 of 7)	48175	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
72052	chr15	28820301	28820500	+	0	NA	intron (NR_037599, intron 10 of 13)	L1M7|LINE|L1	28285	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
108305	chr18	63378671	63379230	+	0	NA	Intergenic	L1M7|LINE|L1	-11744	NM_002035	2531		NM_002035	ENSG00000119537	KDSR	DHSR|EKVP4|FVT1|SDR35C1	3-ketodihydrosphingosine reductase	protein-coding
109694	chr19	1049401	1050300	+	0	NA	intron (NM_019112, intron 18 of 46)	intron (NM_019112, intron 18 of 46)	9743	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
145115	chr20	38790121	38790830	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-15222	NM_001172735	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
15725	chr1	151050321	151051280	+	0	NA	TTS (NM_001038707)	TTS (NM_001038707)	3049	NM_017860	54964		NM_017860	ENSG00000143443	C1orf56	MENT	chromosome 1 open reading frame 56	protein-coding
7476	chr1	33131101	33131300	+	0	NA	Intergenic	Intergenic	45350	NM_001330483	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
19459	chr1	174909221	174909680	+	0	NA	intron (NM_001366454, intron 3 of 8)	AluJb|SINE|Alu	33932	NM_001035230	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
140793	chr2	235802551	235803060	+	0	NA	intron (NM_001037131, intron 8 of 17)	intron (NM_001037131, intron 8 of 17)	-284884	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
67778	chr14	73743571	73744380	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-14772	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
150463	chr21	42526271	42526700	+	0	NA	intron (NM_018964, intron 4 of 20)	intron (NM_018964, intron 4 of 20)	12633	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
81611	chr16	10737131	10737950	+	0	NA	Intergenic	AluSx|SINE|Alu	-6246	NM_001278506	4682		NM_002484	ENSG00000103274	NUBP1	CIAO5|NBP|NBP1|NBP35	NUBP iron-sulfur cluster assembly factor 1, cytosolic	protein-coding
85619	chr16	53914001	53914200	+	0	NA	intron (NM_001363894, intron 8 of 9)	intron (NM_001363894, intron 8 of 9)	-125293	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
20464	chr1	198605451	198606150	+	0	NA	Intergenic	Intergenic	-33168	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
188795	chr5	157863701	157864300	+	0	NA	Intergenic	AluSx|SINE|Alu	-4855	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
136403	chr2	176140451	176141200	+	0	NA	TTS (NR_148241)	TTS (NR_148241)	-3727	NR_038435	100506783		NR_038435		HOXD-AS2	-	HOXD cluster antisense RNA 2	ncRNA
173663	chr4	14481151	14481250	+	0	NA	intron (NR_126435, intron 5 of 6)	L1PA2|LINE|L1	369232	NR_033931	152742		NR_033931	ENSG00000293010	LINC01085	-	long intergenic non-protein coding RNA 1085	ncRNA
32827	chr10	110005771	110006250	+	0	NA	promoter-TSS (NM_001320592)	promoter-TSS (NM_001320592)	63	NM_001320592	120		NM_001121	ENSG00000148700	ADD3	ADDL|CPSQ3	adducin 3	protein-coding
210709	chr7	100585351	100587330	+	0	NA	promoter-TSS (NM_033506)	promoter-TSS (NM_033506)	12	NM_033506	26261		NM_012172	ENSG00000106336	FBXO24	FBX24	F-box protein 24	protein-coding
237494	chrX	119890851	119891150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4893	NM_178813	158798		NM_178813	ENSG00000186471	AKAP14	AKAP28|PRKA14	A-kinase anchoring protein 14	protein-coding
45326	chr11	118204271	118204830	+	0	NA	intron (NR_104479, intron 4 of 8)	L2a|LINE|L2	8396	NM_001286571	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
113965	chr19	10800921	10801380	+	0	NA	intron (NM_001005362, intron 11 of 19)	AluSx3|SINE|Alu	16346	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
52104	chr12	54172921	54173900	+	0	NA	Intergenic	Intergenic	15547	NM_001351257	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
48303	chr12	8991601	8992730	+	0	NA	intron (NM_001329102, intron 2 of 5)	intron (NM_001329102, intron 2 of 5)	2540	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
91481	chr17	4893701	4894350	+	0	NA	exon (NM_153827, exon 22 of 32)	exon (NM_153827, exon 22 of 32)	-5511	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
223234	chr8	143613101	143613480	+	0	NA	exon (NM_001317783, exon 10 of 11)	exon (NM_001317783, exon 10 of 11)	-3715	NR_138144	65263		NM_023078	ENSG00000104524	PYCR3	PYCRL	pyrroline-5-carboxylate reductase 3	protein-coding
95489	chr17	36231101	36231300	+	0	NA	Intergenic	L2a|LINE|L2	20137	NR_111970	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
63793	chr14	21305771	21306600	+	0	NA	intron (NM_020366, intron 6 of 24)	AluSx1|SINE|Alu	-11368	NM_001377950	57096		NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	RPGR interacting protein 1	protein-coding
69325	chr14	93233901	93234100	+	0	NA	Intergenic	Intergenic	26744	NM_175748	55148		NM_175748	ENSG00000012963	UBR7	C14orf130|LICAS	ubiquitin protein ligase E3 component n-recognin 7	protein-coding
102106	chr17	74998901	74999100	+	0	NA	intron (NM_014603, intron 1 of 4)	intron (NM_014603, intron 1 of 4)	11368	NM_014603	30850		NM_014603	ENSG00000109089	CDR2L	HUMPPA	cerebellar degeneration related protein 2 like	protein-coding
67258	chr14	69101351	69101850	+	0	NA	intron (NM_001284208, intron 5 of 6)	intron (NM_001284208, intron 5 of 6)	50999	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
220162	chr8	95072871	95073400	+	0	NA	promoter-TSS (NR_132987)	promoter-TSS (NR_132987)	47	NR_132986	105375650		NR_132986	ENSG00000245080	MIR3150BHG	-	MIR3150B host gene	ncRNA
3160	chr1	12603751	12605050	+	0	NA	intron (NM_004753, intron 1 of 5)	intron (NM_004753, intron 1 of 5)	-7787	NM_001324370	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
202600	chr6	158714121	158714600	+	0	NA	intron (NM_001318745, intron 6 of 14)	AluSx1|SINE|Alu	50393	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
132898	chr2	111377771	111378730	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	-57159	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
13299	chr1	113146801	113147030	+	0	NA	Intergenic	Intergenic	59338	NR_038846	643441		NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
159107	chr3	12579701	12580100	+	0	NA	intron (NM_014160, intron 6 of 7)	FLAM_C|SINE|Alu	-18901	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
69473	chr14	95267371	95267530	+	0	NA	intron (NM_024734, intron 1 of 12)	L1MA4|LINE|L1	52458	NM_024734	79789		NM_024734	ENSG00000165959	CLMN	-	calmin	protein-coding
214701	chr7	150992421	150993430	+	0	NA	promoter-TSS (NM_001160110)	promoter-TSS (NM_001160110)	-857	NM_001160109	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
224754	chr9	21919501	21920200	+	0	NA	Intergenic	MER75B|DNA|PiggyBac	-47289	NR_024274	51198		NM_016349		CDKN2A-AS1	C9orf53|CDKN2A-DT|bA149I2.3	CDKN2A antisense RNA 1	ncRNA
86644	chr16	67448971	67449330	+	0	NA	intron (NM_004691, intron 2 of 7)	intron (NM_004691, intron 2 of 7)	18029	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
233445	chr9	137624171	137624730	+	0	NA	intron (NM_001354612, intron 1 of 8)	AluSz|SINE|Alu	5445	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
10704	chr1	75378851	75379030	+	0	NA	intron (NM_001320283, intron 1 of 21)	HERVK-int|LTR|ERVK	232174	NM_001320287	204962		NM_152697	ENSG00000137968	SLC44A5	CTL5	solute carrier family 44 member 5	protein-coding
71528	chr14	106174161	106175350	+	0	NA	Intergenic	Intergenic	-112919	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
190628	chr5	181203471	181204500	+	0	NA	5' UTR (NM_203296, exon 1 of 7)	5' UTR (NM_203296, exon 1 of 7)	355	NM_203294	81786		NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
202950	chr6	161075851	161076950	+	0	NA	intron (NM_006724, intron 5 of 25)	intron (NM_006724, intron 5 of 25)	84631	NM_005922	4216		NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
56996	chr12	120571221	120571880	+	0	NA	intron (NM_001330474, intron 14 of 16)	intron (NM_001330474, intron 14 of 16)	9848	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
207315	chr7	44033171	44033530	+	0	NA	intron (NR_024116, intron 6 of 8)	MER103C|DNA|hAT-Charlie	-5699	NR_072982	255031		NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
226456	chr9	71718701	71718900	+	0	NA	intron (NM_001135820, intron 11 of 22)	AluSx1|SINE|Alu	49713	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
185016	chr5	115328821	115329080	+	0	NA	Intergenic	Intergenic	-32296	NM_001375899	153733		NM_152549	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
231767	chr9	132239271	132239730	+	0	NA	intron (NM_032536, intron 6 of 7)	intron (NM_032536, intron 6 of 7)	77442	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
82925	chr16	21820121	21821450	+	0	NA	promoter-TSS (NM_001301064).2	promoter-TSS (NM_001301064).2	-300	NM_001301064	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
205498	chr7	17942201	17942400	+	0	NA	Intergenic	L2a|LINE|L2	-1792	NM_001350868	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
101769	chr17	73090171	73090530	+	0	NA	intron (NM_001159770, intron 1 of 9)	intron (NM_001159770, intron 1 of 9)	2338	NM_001352691	201266		NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP-11|ZIP11	solute carrier family 39 member 11	protein-coding
94533	chr17	29575071	29575330	+	0	NA	intron (NM_001085454, intron 19 of 20)	intron (NM_001085454, intron 19 of 20)	6499	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
139388	chr2	222291101	222291300	+	0	NA	intron (NM_181457, intron 4 of 7)	CpG	-6947	NR_161172	151278		NM_153038	ENSG00000163081	CCDC140	-	CCDC140 long non-coding RNA	ncRNA
224653	chr9	20740301	20741180	+	0	NA	intron (NM_017794, intron 7 of 45)	intron (NM_017794, intron 7 of 45)	24635	NR_030166	574444		NR_030166	ENSG00000207609	MIR491	MIRN491|hsa-mir-491|mir-491	microRNA 491	ncRNA
223380	chr8	143891001	143891430	+	0	NA	Intergenic	Intergenic	-12748	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238580	chrX	153874971	153875900	+	0	NA	intron (NM_001278116, intron 2 of 28)	intron (NM_001278116, intron 2 of 28)	509	NM_024003	3897		NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|HYCX|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
51513	chr12	52163701	52164210	+	0	NA	Intergenic	Intergenic	28059	NM_001081492	144501		NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
24498	chr1	244441401	244442200	+	0	NA	intron (NM_001365073, intron 1 of 12)	AluY|SINE|Alu	10109	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
186615	chr5	138532371	138532900	+	0	NA	intron (NM_001291975, intron 2 of 11)	intron (NM_001291975, intron 2 of 11)	9076	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
146586	chr20	50107251	50107680	+	0	NA	intron (NM_001257399, intron 1 of 4)	intron (NM_001257399, intron 1 of 4)	5685	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
81040	chr16	4308951	4309050	+	0	NA	Intergenic	AluSz|SINE|Alu	-5761	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
237006	chrX	102154301	102154670	+	0	NA	intron (NM_001012978, intron 2 of 2)	intron (NM_001012978, intron 2 of 2)	1305	NM_001159560	340542		NM_001012978	ENSG00000184515	BEX5	NGFRAP1L1	brain expressed X-linked 5	protein-coding
37998	chr11	35056771	35057800	+	0	NA	Intergenic	L2a|LINE|L2	80747	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
217164	chr8	26294251	26294430	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	1124	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
215977	chr8	8844351	8844650	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	49130	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
200184	chr6	130781471	130782080	+	0	NA	Intergenic	Intergenic	-45631	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
23214	chr1	227606571	227606730	+	0	NA	intron (NM_178549, intron 2 of 3)	LTR5B|LTR|ERVK	43094	NM_001367911	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
123037	chr19	51168201	51168400	+	0	NA	non-coding (NR_047529, exon 3 of 7)	non-coding (NR_047529, exon 3 of 7)	972	NR_047529	284367		NR_002804	ENSG00000291114	SIGLEC17P	HSPC078|SIGLECP2|SIGLECP3	sialic acid binding Ig like lectin 17, pseudogene	pseudo
224903	chr9	32525821	32527180	+	0	NA	promoter-TSS (NM_014314)	promoter-TSS (NM_014314)	-304	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
108667	chr18	76822601	76824150	+	0	NA	promoter-TSS (NM_007345)	promoter-TSS (NM_007345)	-385	NM_007345	7776		NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
135795	chr2	169826021	169826430	+	0	NA	Intergenic	Intergenic	-1229	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
192556	chr6	25369001	25370000	+	0	NA	intron (NM_001173977, intron 2 of 36)	intron (NM_001173977, intron 2 of 36)	90126	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
238669	chrX	154029401	154029980	+	0	NA	3' UTR (NM_001316337, exon 5 of 5)	3' UTR (NM_001316337, exon 5 of 5)	-9701	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
18672	chr1	167208321	167208650	+	0	NA	Intergenic	MSTB2|LTR|ERVL-MaLR	-12400	NM_001365849	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
186488	chr5	138180201	138180680	+	0	NA	intron (NM_005733, intron 2 of 18)	MER20|DNA|hAT-Charlie	1328	NM_005733	10112		NM_005733	ENSG00000112984	KIF20A	MKLP2|RAB6KIFL|RCM6	kinesin family member 20A	protein-coding
24105	chr1	235503021	235503280	+	0	NA	intron (NM_001277155, intron 1 of 7)	intron (NM_001277155, intron 1 of 7)	1302	NM_001277155	148789		NM_152490	ENSG00000162885	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
41555	chr11	66316901	66319000	+	0	NA	promoter-TSS (NM_020404)	promoter-TSS (NM_020404)	-906	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
231510	chr9	131406771	131407130	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	12864	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
173286	chr4	7064021	7064400	+	0	NA	exon (NM_025196, exon 2 of 4)	exon (NM_025196, exon 2 of 4)	3854	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
112269	chr19	5801921	5803000	+	0	NA	Intergenic	CpG	-2607	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
36319	chr11	3864001	3864200	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	8038	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
46387	chr11	126301501	126301700	+	0	NA	Intergenic	AluY|SINE|Alu	-2460	NM_014026	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
103748	chr17	78918901	78919100	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	6387	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
130113	chr2	74544471	74544900	+	0	NA	intron (NM_032603, intron 4 of 13)	intron (NM_032603, intron 4 of 13)	-4335	NM_001197260	1796		NM_001381	ENSG00000115325	DOK1	P62DOK|pp62	docking protein 1	protein-coding
113357	chr19	8684551	8684650	+	0	NA	Intergenic	MIR|SINE|MIR	14195	NM_178525	284382		NM_178525	ENSG00000181786	ACTL9	HSD21|SPGF53	actin like 9	protein-coding
89412	chr16	88856011	88857500	+	0	NA	promoter-TSS (NM_001318525)	promoter-TSS (NM_001318525)	192	NM_000512	2588		NM_000512	ENSG00000141012	GALNS	GALNAC6S|GAS|GalN6S|MPS4A	galactosamine (N-acetyl)-6-sulfatase	protein-coding
43690	chr11	85853871	85854050	+	0	NA	Intergenic	AluSz|SINE|Alu	-1423	NM_173556	220047		NM_173556	ENSG00000150676	CCDC83	CT148|HSD9|KP-CoT-23	coiled-coil domain containing 83	protein-coding
214639	chr7	150745771	150746450	+	0	NA	Intergenic	Intergenic	8762	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
2644	chr1	10410071	10410230	+	0	NA	intron (NM_001304451, intron 5 of 11)	intron (NM_001304451, intron 5 of 11)	11086	NM_001304452	5226		NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
15652	chr1	150841601	150842200	+	0	NA	intron (NM_001197325, intron 4 of 20)	intron (NM_001197325, intron 4 of 20)	-33640	NM_000396	1513		NM_000396	ENSG00000143387	CTSK	CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD	cathepsin K	protein-coding
31683	chr10	97454701	97454900	+	0	NA	intron (NM_001287803, intron 9 of 11)	intron (NM_001287803, intron 9 of 11)	8625	NM_198046	84287		NM_032327	ENSG00000171307	ZDHHC16	APH2|DHHC-16	zinc finger DHHC-type palmitoyltransferase 16	protein-coding
3811	chr1	16755401	16755930	+	0	NA	3' UTR (NM_001271733, exon 15 of 15)	3' UTR (NM_001271733, exon 15 of 15)	8815	NM_001271733	11223		NM_001271733	ENSG00000186715	MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P|MST1P7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1 like (pseudogene)	pseudo
54853	chr12	95476301	95476500	+	0	NA	intron (NM_001317183, intron 2 of 9)	AluSx|SINE|Alu	2248	NM_001317183	10988		NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
188822	chr5	159064751	159065050	+	0	NA	intron (NM_182708, intron 5 of 14)	(T)n|Simple_repeat|Simple_repeat	33056	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
163180	chr3	50194151	50195430	+	0	NA	exon (NM_000172, exon 8 of 9)	exon (NM_000172, exon 8 of 9)	3180	NM_000172	2779		NM_000172	ENSG00000114349	GNAT1	CSNB1G|CSNBAD3|GBT1|GNATR|HG1F	G protein subunit alpha transducin 1	protein-coding
17740	chr1	158976371	158976530	+	0	NA	intron (NM_152501, intron 8 of 8)	intron (NM_152501, intron 8 of 8)	-23526	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
165820	chr3	105827201	105827400	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	40291	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
44815	chr11	113873421	113873680	+	0	NA	intron (NM_020886, intron 1 of 24)	intron (NM_020886, intron 1 of 24)	2022	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
43665	chr11	85750671	85751350	+	0	NA	intron (NM_001365827, intron 1 of 17)	intron (NM_001365827, intron 1 of 17)	7059	NM_001162951	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
239218	chrY	12931321	12931750	+	0	NA	Intergenic	Intergenic	25830	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
93726	chr17	19546521	19546780	+	0	NA	intron (NM_018242, intron 3 of 16)	intron (NM_018242, intron 3 of 16)	-10910	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
97524	chr17	44002101	44002300	+	0	NA	intron (NM_004160, intron 1 of 6)	intron (NM_004160, intron 1 of 6)	2245	NM_004160	5697		NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
78643	chr15	94267821	94268080	+	0	NA	intron (NR_169532, intron 1 of 23)	AluY|SINE|Alu	36389	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
5174	chr1	24936601	24937530	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-6789	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
107285	chr18	44700301	44701230	+	0	NA	promoter-TSS (NM_001379142)	promoter-TSS (NM_001379142)	-110	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
131534	chr2	96616001	96616400	+	0	NA	intron (NR_146102, intron 4 of 20)	intron (NR_146102, intron 4 of 20)	21791	NR_047658	55683		NM_017991	ENSG00000114982	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
110265	chr19	1804801	1805000	+	0	NA	intron (NR_047593, intron 10 of 28)	intron (NR_047593, intron 10 of 28)	7376	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
62049	chr13	91345501	91345880	+	0	NA	Intergenic	Intergenic	-2130	NR_027349	407975		NM_213723	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA
45096	chr11	117087351	117088180	+	0	NA	intron (NM_001281748, intron 1 of 24)	L1ME4c|LINE|L1	10663	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
179990	chr5	894001	894300	+	0	NA	intron (NM_001166260, intron 1 of 8)	intron (NM_001166260, intron 1 of 8)	1266	NM_004237	9319		NM_004237	ENSG00000071539	TRIP13	16E1BP|MVA3|OOMD9|OZEMA9	thyroid hormone receptor interactor 13	protein-coding
146807	chr20	50993021	50993310	+	0	NA	Intergenic	LTR41B|LTR|ERVL	29942	NM_002237	3755		NM_002237	ENSG00000026559	KCNG1	K13|KCNG|KV6.1|kH2	potassium voltage-gated channel modifier subfamily G member 1	protein-coding
208533	chr7	70649871	70650230	+	0	NA	intron (NM_015570, intron 5 of 18)	MLT1L|LTR|ERVL-MaLR	-482094	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
179646	chr4	189137221	189137480	+	0	NA	Intergenic	L1HS|LINE|L1	360693	NR_149102	105377610		NR_149102	ENSG00000251619	LINC02508	-	long intergenic non-protein coding RNA 2508	ncRNA
175432	chr4	71066901	71067100	+	0	NA	Intergenic	Intergenic	73351	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
170578	chr3	186825321	186826100	+	0	NA	promoter-TSS (NR_125409)	promoter-TSS (NR_125409)	-189	NR_125409	102724699		NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
196179	chr6	42590721	42591180	+	0	NA	intron (NM_001363705, intron 2 of 46)	L1M4|LINE|L1	26921	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
160362	chr3	27848951	27849050	+	0	NA	intron (NR_146630, intron 4 of 4)	intron (NR_146630, intron 4 of 4)	-14864	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
132866	chr2	111100451	111100950	+	0	NA	non-coding (NR_122074, exon 4 of 4)	non-coding (NR_122074, exon 4 of 4)	14888	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
193117	chr6	28951901	28952530	+	0	NA	Intergenic	Intergenic	8431	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
101835	chr17	73720051	73720550	+	0	NA	Intergenic	Intergenic	-17554	NR_164140	100134391		NR_164140	ENSG00000263574	LOC100134391	-	uncharacterized LOC100134391	ncRNA
6337	chr1	27719201	27720550	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-6086	NM_001143914	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
40232	chr11	63566521	63567690	+	0	NA	Intergenic	LTR43|LTR|ERV1	-3726	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
123210	chr19	52736421	52736680	+	0	NA	Intergenic	AluSz|SINE|Alu	-1496	NM_001161500	81856		NM_030972	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
40454	chr11	64212751	64212850	+	0	NA	intron (NM_001382363, intron 5 of 13)	L2|LINE|L2	5094	NM_001382364	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
115238	chr19	14514501	14515030	+	0	NA	TTS (NM_006145)	TTS (NM_006145)	3097	NM_001300914	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
23722	chr1	231931871	231932050	+	0	NA	intron (NR_126441, intron 1 of 3)	intron (NR_126441, intron 1 of 3)	6126	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
217505	chr8	29071201	29071400	+	0	NA	intron (NM_015254, intron 39 of 39)	intron (NM_015254, intron 39 of 39)	179986	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
124302	chr19	57914701	57915150	+	0	NA	intron (NM_152475, intron 1 of 2)	intron (NM_152475, intron 1 of 2)	1667	NM_001297734	147687		NM_152475	ENSG00000173480	ZNF417	-	zinc finger protein 417	protein-coding
130736	chr2	86785021	86785800	+	0	NA	non-coding (NR_027353, exon 7 of 7)	non-coding (NR_027353, exon 7 of 7)	5503	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
205466	chr7	17298311	17300180	+	0	NA	5' UTR (NM_001621, exon 1 of 11)	5' UTR (NM_001621, exon 1 of 11)	593	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
18225	chr1	161027521	161027780	+	0	NA	Intergenic	AluYh3|SINE|Alu	-6498	NM_001382730	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
82717	chr16	20899781	20901580	+	0	NA	promoter-TSS (NM_001128302)	promoter-TSS (NM_001128302)	-37	NM_001369635	57149		NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
73933	chr15	51094201	51094400	+	0	NA	intron (NM_207381, intron 2 of 2)	CpG	606	NM_001311175	388121		NM_207381	ENSG00000183578	TNFAIP8L3	TIPE3	TNF alpha induced protein 8 like 3	protein-coding
83508	chr16	27443701	27443930	+	0	NA	intron (NM_181078, intron 5 of 8)	intron (NM_181078, intron 5 of 8)	9578	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
178763	chr4	153343451	153343780	+	0	NA	Intergenic	Intergenic	-1034	NM_001253861	84057		NM_032117	ENSG00000121211	MND1	GAJ	meiotic nuclear divisions 1	protein-coding
183695	chr5	80837671	80838030	+	0	NA	intron (NM_002439, intron 20 of 23)	MLT1E1A|LTR|ERVL-MaLR	-122513	NM_006909	5924		NM_006909	ENSG00000113319	RASGRF2	GRF2|RAS-GRF2	Ras protein specific guanine nucleotide releasing factor 2	protein-coding
79741	chr16	1338171	1339000	+	0	NA	exon (NM_003933, exon 2 of 34)	exon (NM_003933, exon 2 of 34)	2388	NM_001199096	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
61200	chr13	49378401	49378980	+	0	NA	intron (NM_001079670, intron 4 of 10)	SVA_F|Retroposon|SVA	22852	NM_030925	81617		NM_030925	ENSG00000102547	CAB39L	MLAA-34|MO25-BETA|MO2L|bA103J18.3	calcium binding protein 39 like	protein-coding
172681	chr4	2743701	2744900	+	0	NA	intron (NM_001292016, intron 4 of 4)	intron (NM_001292016, intron 4 of 4)	12036	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
95814	chr17	38745251	38745780	+	0	NA	intron (NM_001369614, intron 1 of 9)	AluSg7|SINE|Alu	1113	NM_001369615	7703		NM_007144	ENSG00000277258	PCGF2	MEL-18|RNF110|TPFS|ZNF144	polycomb group ring finger 2	protein-coding
215999	chr8	8893001	8894280	+	0	NA	promoter-TSS (NM_004225)	promoter-TSS (NM_004225)	-10	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
125888	chr2	24690451	24690750	+	0	NA	intron (NM_147233, intron 6 of 20)	AluSg|SINE|Alu	-102515	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
14181	chr1	121518871	121520130	+	0	NA	intron (NR_003955, intron 1 of 7)	CpG	388	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
161364	chr3	40465601	40465800	+	0	NA	3' UTR (NM_003973, exon 6 of 6)	3' UTR (NM_003973, exon 6 of 6)	8361	NM_001034996	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
145653	chr20	44911451	44912080	+	0	NA	intron (NM_001372179, intron 1 of 14)	intron (NM_001372179, intron 1 of 14)	1705	NR_134987	80336		NM_001124756	ENSG00000101104	PABPC1L	C20orf119|EPAB|PABPC1L1|dJ1069P2.3	poly(A) binding protein cytoplasmic 1 like	protein-coding
12598	chr1	109039171	109039780	+	0	NA	intron (NM_001142550, intron 1 of 14)	AluSx|SINE|Alu	2627	NM_001142551	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
141918	chr20	1120251	1120350	+	0	NA	intron (NM_178578, intron 2 of 7)	intron (NM_178578, intron 2 of 7)	1698	NM_001323410	9491		NM_006814	ENSG00000125818	PSMF1	PI31	proteasome inhibitor subunit 1	protein-coding
87695	chr16	74697101	74697450	+	0	NA	intron (NM_001142497, intron 1 of 5)	MLT1J2|LTR|ERVL-MaLR	3587	NM_001142497	197259		NM_152649	ENSG00000168404	MLKL	hMLKL	mixed lineage kinase domain like pseudokinase	protein-coding
128803	chr2	62411671	62412630	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	94045	NM_198276	200728		NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
67035	chr14	67619401	67621050	+	0	NA	intron (NM_001172, intron 1 of 7)	CpG	305	NM_001172	384		NM_001172	ENSG00000081181	ARG2	-	arginase 2	protein-coding
123128	chr19	51926621	51928050	+	0	NA	promoter-TSS (NM_001031721)	promoter-TSS (NM_001031721)	-137	NM_001031721	79898		NM_024840	ENSG00000176024	ZNF613	-	zinc finger protein 613	protein-coding
205775	chr7	23531201	23533700	+	0	NA	promoter-TSS (NM_001282758)	promoter-TSS (NM_001282758)	-409	NM_001282757	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
203086	chr6	166341251	166342100	+	0	NA	promoter-TSS (NR_040022)	promoter-TSS (NR_040022)	870	NR_130113	113402		NM_145169	ENSG00000198818	SFT2D1	C6orf83|pRGR1	SFT2 domain containing 1	protein-coding
145903	chr20	45965171	45965930	+	0	NA	intron (NM_022095, intron 7 of 27)	intron (NM_022095, intron 7 of 27)	6653	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
83346	chr16	25033101	25033680	+	0	NA	TTS (NR_038379)	TTS (NR_038379)	1649	NR_038379	554206		NR_038379	ENSG00000291179	LOC554206	-	leucine carboxyl methyltransferase 1 pseudogene	pseudo
87660	chr16	74592171	74592330	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluSx|SINE|Alu	14864	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
18909	chr1	168386771	168387730	+	0	NA	Intergenic	Intergenic	11726	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
36611	chr11	6749371	6749730	+	0	NA	Intergenic	Intergenic	19407	NM_001004490	338755		NM_001004490	ENSG00000188124	OR2AG2	OR11-76|OR2AG2P	olfactory receptor family 2 subfamily AG member 2	protein-coding
148988	chr21	14097951	14098130	+	0	NA	Intergenic	(ATCACC)n|Simple_repeat|Simple_repeat	108909	NM_198996	149998		NM_145317	ENSG00000188992	LIPI	CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta	lipase I	protein-coding
5214	chr1	24980851	24980950	+	0	NA	Intergenic	Intergenic	-15890	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
156357	chr22	40950631	40953150	+	0	NA	intron (NM_014248, intron 1 of 4)	intron (NM_014248, intron 1 of 4)	512	NM_014248	9978		NM_014248	ENSG00000100387	RBX1	BA554C12.1|RNF75|ROC1	ring-box 1	protein-coding
167860	chr3	134312501	134313830	+	0	NA	promoter-TSS (NR_146711)	promoter-TSS (NR_146711)	-411	NR_146711	105374119		NR_146711	ENSG00000240006	LINC02004	-	long intergenic non-protein coding RNA 2004	ncRNA
93522	chr17	19022621	19023380	+	0	NA	TTS (NM_001270648)	TTS (NM_001270648)	-18236	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
14888	chr1	146936671	146936830	+	0	NA	Intergenic	AluJb|SINE|Alu	-1795	NM_001278141	149013		NM_001278141	ENSG00000268043	NBPF12	COAS1|KIAA1245	NBPF member 12	protein-coding
212936	chr7	130932121	130932550	+	0	NA	Intergenic	AluSz|SINE|Alu	18871	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
115092	chr19	14246251	14246550	+	0	NA	Intergenic	AluSx|SINE|Alu	-40231	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
155012	chr22	37381751	37382050	+	0	NA	intron (NM_052906, intron 2 of 2)	AluYc|SINE|Alu	-27061	NR_110515	100506271		NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA
79978	chr16	1789551	1790400	+	0	NA	TTS (NM_001146006)	TTS (NM_001146006)	3730	NM_004970	3483		NM_004970	ENSG00000099769	IGFALS	ACLSD|ALS	insulin like growth factor binding protein acid labile subunit	protein-coding
190386	chr5	179790971	179791200	+	0	NA	Intergenic	L1MC4|LINE|L1	-2901	NM_145867	4056		NM_000897	ENSG00000213316	LTC4S	-	leukotriene C4 synthase	protein-coding
3530	chr1	16073201	16074200	+	0	NA	promoter-TSS (NM_182623)	promoter-TSS (NM_182623)	-49	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
145754	chr20	45138771	45139030	+	0	NA	Intergenic	Intergenic	-14435	NM_080869	128488		NM_080869	ENSG00000168703	WFDC12	C20orf122|SWAM2|WAP2|dJ211D12.4	WAP four-disulfide core domain 12	protein-coding
28051	chr10	43261921	43262180	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	5015	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
239120	chrY	11299871	11300400	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	1121455	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
182543	chr5	65719251	65720230	+	0	NA	intron (NM_019072, intron 2 of 10)	intron (NM_019072, intron 2 of 10)	2369	NM_019072	54557		NM_019072	ENSG00000197860	SGTB	SGT2	small glutamine rich tetratricopeptide repeat co-chaperone beta	protein-coding
7250	chr1	32352771	32353280	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	9218	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
20297	chr1	197147951	197148980	+	0	NA	Intergenic	Intergenic	-1771	NM_001206846	259266		NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	assembly factor for spindle microtubules	protein-coding
139626	chr2	225282871	225283130	+	0	NA	Intergenic	Intergenic	-116710	NM_001371273	57624		NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding
76956	chr15	78123951	78124250	+	0	NA	intron (NM_001301224, intron 1 of 4)	intron (NM_001301224, intron 1 of 4)	7345	NM_006383	10518		NM_006383	ENSG00000136425	CIB2	DFNB48|KIP2|USH1J	calcium and integrin binding family member 2	protein-coding
178664	chr4	152495871	152496030	+	0	NA	intron (NM_001349798, intron 2 of 13)	AluJr|SINE|Alu	-6534	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
202878	chr6	159971071	159971330	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	2118	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
41448	chr11	66098801	66099250	+	0	NA	intron (NM_018026, intron 1 of 23)	L1MC4|LINE|L1	28753	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
207426	chr7	44488351	44488650	+	0	NA	intron (NM_015332, intron 1 of 5)	intron (NM_015332, intron 1 of 5)	2158	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
122785	chr19	50325221	50326350	+	0	NA	intron (NM_001372305, intron 1 of 4)	CpG	3286	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
184323	chr5	96931271	96931850	+	0	NA	Intergenic	LTR35A|LTR|ERV1	-4520	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
115149	chr19	14399401	14400330	+	0	NA	intron (NM_001025160, intron 8 of 18)	AluJo|SINE|Alu	18421	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
81117	chr16	4380001	4380300	+	0	NA	intron (NM_138440, intron 1 of 1)	intron (NM_138440, intron 1 of 1)	8302	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
162311	chr3	47422321	47423150	+	0	NA	intron (NM_001320044, intron 6 of 19)	intron (NM_001320044, intron 6 of 19)	41714	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
32628	chr10	103677151	103677250	+	0	NA	intron (NM_014631, intron 6 of 13)	intron (NM_014631, intron 6 of 13)	1015	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
95037	chr17	32494601	32495280	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	7947	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
130532	chr2	85637301	85638400	+	0	NA	intron (NR_046347, intron 8 of 12)	AluSx1|SINE|Alu	21664	NM_001256725	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
23526	chr1	229130171	229130730	+	0	NA	Intergenic	Intergenic	44351	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
27724	chr10	34637521	34637880	+	0	NA	intron (NM_019619, intron 2 of 24)	intron (NM_019619, intron 2 of 24)	177596	NM_001184794	56288		NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
135478	chr2	161417971	161418230	+	0	NA	intron (NM_006593, intron 2 of 5)	(GT)n|Simple_repeat|Simple_repeat	1803	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
184247	chr5	96672421	96672680	+	0	NA	intron (NM_001375317, intron 1 of 30)	AluSz6|SINE|Alu	9525	NM_001330629	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
221505	chr8	124585871	124586500	+	0	NA	intron (NM_001363300, intron 5 of 12)	L2b|LINE|L2	47062	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
196222	chr6	42788601	42789080	+	0	NA	intron (NR_134654, intron 1 of 1)	L2c|LINE|L2	5344	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
194509	chr6	33287701	33287900	+	0	NA	promoter-TSS (NR_106933)	promoter-TSS (NR_106933)	-511	NR_106933	102466754		NR_106933	ENSG00000284517	MIR6873	hsa-mir-6873	microRNA 6873	ncRNA
52322	chr12	54965201	54965400	+	0	NA	intron (NM_001351150, intron 4 of 7)	L1PA10|LINE|L1	8432	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
199738	chr6	125778501	125778700	+	0	NA	Intergenic	Intergenic	-2515	NM_001199619	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
16764	chr1	155356901	155357180	+	0	NA	intron (NM_018489, intron 15 of 27)	AluJo|SINE|Alu	-10595	NR_030282	693140		NR_030282	ENSG00000283701	MIR555	MIRN555|hsa-mir-555	microRNA 555	ncRNA
182270	chr5	57205801	57206000	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluJb|SINE|Alu	-8174	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
201182	chr6	143060131	143061780	+	0	NA	promoter-TSS (NM_001366363)	promoter-TSS (NM_001366363)	66	NM_001366346	51390		NM_016108	ENSG00000146416	AIG1	AIG-1|dJ95L4.1	androgen induced 1	protein-coding
126290	chr2	27206971	27207400	+	0	NA	intron (NR_028323, intron 3 of 16)	intron (NR_028323, intron 3 of 16)	5083	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
196197	chr6	42742301	42742500	+	0	NA	Intergenic	LTR33|LTR|ERVL	3703	NM_003192	6903		NM_003192	ENSG00000124659	TBCC	CFC	tubulin folding cofactor C	protein-coding
21079	chr1	203314451	203315400	+	0	NA	Intergenic	L1PA6|LINE|L1	9406	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
25071	chr10	3814371	3815280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-19125	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
63438	chr13	114107651	114108550	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	24523	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
120789	chr19	45447151	45447480	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluSq2|SINE|Alu	3451	NM_001369417	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
57789	chr12	123073471	123073900	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-7699	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
148549	chr20	64227121	64227580	+	0	NA	intron (NM_004535, intron 16 of 22)	intron (NM_004535, intron 16 of 22)	-28345	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
77119	chr15	78943071	78943480	+	0	NA	intron (NM_001319137, intron 1 of 12)	AluSx1|SINE|Alu	1771	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
191060	chr6	3344301	3344500	+	0	NA	intron (NM_001382320, intron 1 of 1)	intron (NM_001382320, intron 1 of 1)	-20250	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
97216	chr17	42779971	42781330	+	0	NA	promoter-TSS (NM_001321299)	promoter-TSS (NM_001321299)	40	NM_032387	65266		NM_032387	ENSG00000126562	WNK4	PHA2B|PRKWNK4	WNK lysine deficient protein kinase 4	protein-coding
222111	chr8	131905651	131906050	+	0	NA	intron (NM_001323555, intron 1 of 22)	intron (NM_001323555, intron 1 of 22)	1757	NM_015137	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
208112	chr7	58204921	58205050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	754808	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
70022	chr14	100091201	100091950	+	0	NA	intron (NM_016337, intron 2 of 13)	MER21A|LTR|ERVL	17939	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
6856	chr1	31061671	31062030	+	0	NA	intron (NM_014676, intron 1 of 21)	AluJo|SINE|Alu	3867	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
184029	chr5	91361071	91361880	+	0	NA	Intergenic	L1PA17|LINE|L1	18622	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
96413	chr17	40164371	40164630	+	0	NA	intron (NM_007359, intron 7 of 13)	AluSc|SINE|Alu	2567	NR_106926	102466986		NR_106926	ENSG00000284144	MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
143672	chr20	32008271	32008430	+	0	NA	Intergenic	MIRc|SINE|MIR	-2088	NM_001365692	140706		NM_080625	ENSG00000101331	CCM2L	C20orf160|dJ310O13.5	CCM2 like scaffold protein	protein-coding
152743	chr22	21696971	21697330	+	0	NA	TTS (NR_130910)	TTS (NR_130910)	31138	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
215124	chr7	155363951	155364050	+	0	NA	intron (NR_103545, intron 1 of 5)	intron (NR_103545, intron 1 of 5)	3933	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
168067	chr3	137946471	137946630	+	0	NA	Intergenic	Intergenic	-52266	NM_001002026	51208		NM_016369	ENSG00000066405	CLDN18	SFTA5|SFTPJ	claudin 18	protein-coding
236821	chrX	79177401	79177600	+	0	NA	Intergenic	Intergenic	32812	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
221164	chr8	119887101	119887400	+	0	NA	intron (NM_001283012, intron 1 of 6)	AluSx|SINE|Alu	13528	NM_022783	64798		NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6|hDEPTOR	DEP domain containing MTOR interacting protein	protein-coding
146782	chr20	50917321	50917580	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-7659	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
11352	chr1	89612971	89613330	+	0	NA	Intergenic	Intergenic	19744	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
35383	chr11	1308901	1310530	+	0	NA	promoter-TSS (NM_019009)	promoter-TSS (NM_019009)	7	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
133205	chr2	113156371	113156530	+	0	NA	Intergenic	MER101|LTR|ERV1	-17521	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
216873	chr8	22631471	22631830	+	0	NA	intron (NM_001363046, intron 3 of 7)	intron (NM_001363046, intron 3 of 7)	10559	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
72583	chr15	34966871	34967230	+	0	NA	intron (NM_014691, intron 1 of 34)	AluSp|SINE|Alu	2692	NM_014691	9716		NM_014691	ENSG00000021776	AQR	IBP160|fSAP164	aquarius intron-binding spliceosomal factor	protein-coding
169406	chr3	160793901	160794100	+	0	NA	intron (NM_139245, intron 1 of 3)	MER101B|LTR|ERV1	37769	NM_139245	151742		NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
4395	chr1	20982021	20982280	+	0	NA	intron (NM_001198801, intron 5 of 34)	intron (NM_001198801, intron 5 of 34)	6282	NR_031657	100302155		NR_031657	ENSG00000221808	MIR1256	MIRN1256|hsa-mir-1256	microRNA 1256	ncRNA
120617	chr19	45038671	45039850	+	0	NA	intron (NM_001278439, intron 1 of 19)	CpG	215	NR_103529	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
192752	chr6	26420741	26422300	+	0	NA	non-coding (NR_027795, exon 1 of 7)	non-coding (NR_027795, exon 1 of 7)	129	NR_027795	54718		NM_024018	ENSG00000291104	BTN2A3P	BTN2.3|BTN2A3	butyrophilin subfamily 2 member A3, pseudogene	pseudo
152644	chr22	21521801	21522250	+	0	NA	Intergenic	AluSz|SINE|Alu	-4534	NR_003700	375133		NR_003700	ENSG00000293427	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
30857	chr10	86585051	86585900	+	0	NA	Intergenic	L2c|LINE|L2	-63683	NM_015045	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
104159	chr17	80395601	80396400	+	0	NA	3' UTR (NM_001256071, exon 68 of 68)	3' UTR (NM_001256071, exon 68 of 68)	-19167	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
234157	chrX	10616051	10616150	+	0	NA	intron (NM_033290, intron 1 of 9)	intron (NM_033290, intron 1 of 9)	4485	NM_000381	4281		NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
24733	chr1	248243351	248243450	+	0	NA	Intergenic	L1P4a|LINE|L1	4471	NM_017504	26245		NM_017504	ENSG00000171180	OR2M4	HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100	olfactory receptor family 2 subfamily M member 4	protein-coding
88607	chr16	85604321	85604650	+	0	NA	Intergenic	L1MB7|LINE|L1	-6924	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
197635	chr6	83514971	83515130	+	0	NA	intron (NM_153362, intron 1 of 1)	intron (NM_153362, intron 1 of 1)	2516	NM_001170423	167681		NM_153362	ENSG00000146250	PRSS35	C6orf158|dJ223E3.1	serine protease 35	protein-coding
74922	chr15	63707851	63709450	+	0	NA	intron (NM_003922, intron 24 of 77)	intron (NM_003922, intron 24 of 77)	-107823	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
213884	chr7	142433971	142434880	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-40102	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
27212	chr10	28623621	28623880	+	0	NA	TTS (NM_100264)	TTS (NM_100264)	-53771	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
74893	chr15	63596571	63596930	+	0	NA	promoter-TSS (NM_001367808)	promoter-TSS (NM_001367808)	-637	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
56581	chr12	117192021	117192280	+	0	NA	Intergenic	L2c|LINE|L2	-1680	NM_033624	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
158826	chr3	9754471	9754830	+	0	NA	intron (NM_016827, intron 3 of 3)	intron (NM_016827, intron 3 of 3)	4706	NM_016820	4968		NM_002542	ENSG00000114026	OGG1	HMMH|HOGG1|MUTM|OGH1	8-oxoguanine DNA glycosylase	protein-coding
82209	chr16	14989551	14990350	+	0	NA	intron (NM_001285448, intron 2 of 21)	CpG	14924	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
236243	chrX	65740801	65741380	+	0	NA	3' UTR (NM_002444, exon 13 of 13)	3' UTR (NM_002444, exon 13 of 13)	73436	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
121333	chr19	46781051	46781350	+	0	NA	intron (NM_005628, intron 4 of 7)	MIRb|SINE|MIR	3614	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
10513	chr1	66922401	66922600	+	0	NA	intron (NM_207014, intron 1 of 9)	intron (NM_207014, intron 1 of 9)	2356	NM_207014	79819		NM_024763	ENSG00000152763	DNAI4	DIC4|WDR78	dynein axonemal intermediate chain 4	protein-coding
203534	chr7	847401	847950	+	0	NA	intron (NM_025154, intron 5 of 17)	CpG	6301	NM_001367708	23353		NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
100151	chr17	58531571	58532580	+	0	NA	promoter-TSS (NM_080415)	promoter-TSS (NM_080415)	9	NM_080415	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
174418	chr4	39451071	39451430	+	0	NA	3' UTR (NM_175737, exon 5 of 5)	3' UTR (NM_175737, exon 5 of 5)	7672	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
65903	chr14	55275371	55276080	+	0	NA	intron (NM_152231, intron 1 of 1)	AluY|SINE|Alu	3571	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
232002	chr9	133353721	133354180	+	0	NA	intron (NM_001280787, intron 3 of 7)	intron (NM_001280787, intron 3 of 7)	2535	NM_001280787	6834		NM_003172	ENSG00000148290	SURF1	CMT4K|MC4DN1|SHY1	SURF1 cytochrome c oxidase assembly factor	protein-coding
113300	chr19	8560751	8561250	+	0	NA	intron (NM_012335, intron 1 of 27)	AluY|SINE|Alu	16442	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
49217	chr12	18159221	18159480	+	0	NA	Intergenic	Intergenic	-69157	NM_024730	79785		NM_024730	ENSG00000111404	RERGL	-	RERG like	protein-coding
215670	chr8	689401	690180	+	0	NA	intron (NM_207332, intron 3 of 5)	intron (NM_207332, intron 3 of 5)	41434	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
39289	chr11	58567951	58569130	+	0	NA	intron (NM_004811, intron 2 of 8)	AluSx|SINE|Alu	7316	NM_004811	9404		NM_004811	ENSG00000110031	LPXN	LDPL	leupaxin	protein-coding
55155	chr12	98998771	98998930	+	0	NA	intron (NM_020140, intron 3 of 10)	intron (NM_020140, intron 3 of 10)	-94509	NR_110095	101928937		NR_110095	ENSG00000258039	LOC101928937	-	uncharacterized LOC101928937	ncRNA
236327	chrX	69162321	69162850	+	0	NA	exon (NM_145119, exon 2 of 2)	exon (NM_145119, exon 2 of 2)	2868	NM_145119	64219		NM_022368	ENSG00000181191	PJA1	PRAJA1|RNF70	praja ring finger ubiquitin ligase 1	protein-coding
111053	chr19	3108371	3109480	+	0	NA	intron (NM_002067, intron 1 of 6)	MLT1F1|LTR|ERVL-MaLR	14563	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
106329	chr18	12949651	12950230	+	0	NA	intron (NM_031216, intron 1 of 8)	L1MB4|LINE|L1	1929	NM_001013437	81929		NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
68926	chr14	91374721	91375800	+	0	NA	intron (NM_001080414, intron 3 of 29)	(GT)n|Simple_repeat|Simple_repeat	42560	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
115176	chr19	14429671	14430430	+	0	NA	Intergenic	Intergenic	-3256	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
154292	chr22	31751171	31751630	+	0	NA	Intergenic	AluSz|SINE|Alu	-1268	NM_173566	253143		NM_173566	ENSG00000183530	PRR14L	C22orf30	proline rich 14 like	protein-coding
174685	chr4	41963221	41963780	+	0	NA	Intergenic	AluYa5|SINE|Alu	-18256	NM_001029955	285429		NM_001029955	ENSG00000182308	DCAF4L1	WDR21B	DDB1 and CUL4 associated factor 4 like 1	protein-coding
114212	chr19	11439121	11439380	+	0	NA	intron (NM_001001329, intron 5 of 17)	U13_|snRNA|snRNA	-3468	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
171005	chr3	194715121	194715850	+	0	NA	intron (NR_037891, intron 1 of 3)	MER5A|DNA|hAT-Charlie	7064	NR_037891	100507391		NR_037891	ENSG00000237222	LINC01968	-	long intergenic non-protein coding RNA 1968	ncRNA
108960	chr18	79521371	79521780	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-57707	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
33062	chr10	110877001	110877880	+	0	NA	intron (NM_145341, intron 3 of 12)	MER33|DNA|hAT-Charlie	5512	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
129322	chr2	68725471	68725830	+	0	NA	Intergenic	L2a|LINE|L2	-9161	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
6386	chr1	27890501	27890800	+	0	NA	TTS (NM_001297558)	TTS (NM_001297558)	18106	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
6461	chr1	28262801	28263100	+	0	NA	intron (NM_031459, intron 1 of 9)	intron (NM_031459, intron 1 of 9)	3432	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
114983	chr19	14034151	14034250	+	0	NA	intron (NM_004843, intron 2 of 13)	L2a|LINE|L2	2438	NM_004843	9466		NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
197552	chr6	79145371	79145530	+	0	NA	Intergenic	Intergenic	-67196	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
45113	chr11	117138751	117139200	+	0	NA	Intergenic	AluYc|SINE|Alu	-5309	NM_001184748	5049		NM_002572	ENSG00000168092	PAFAH1B2	HEL-S-303	platelet activating factor acetylhydrolase 1b catalytic subunit 2	protein-coding
80955	chr16	3868671	3869750	+	0	NA	intron (NM_004380, intron 1 of 30)	L2b|LINE|L2	10910	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
39938	chr11	62542431	62544200	+	0	NA	intron (NM_024060, intron 1 of 5)	intron (NM_024060, intron 1 of 5)	2349	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
26404	chr10	17025301	17025990	+	0	NA	intron (NM_001081, intron 27 of 66)	intron (NM_001081, intron 27 of 66)	104166	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
202907	chr6	160041501	160041800	+	0	NA	intron (NM_000876, intron 11 of 47)	intron (NM_000876, intron 11 of 47)	-33986	NR_047514	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
132909	chr2	111413221	111414150	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	81476	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
164315	chr3	57694101	57695230	+	0	NA	non-coding (NR_135550, exon 2 of 2)	non-coding (NR_135550, exon 2 of 2)	1460	NR_135550	101929159		NR_135550	ENSG00000241933	DENND6A-DT	-	DENND6A divergent transcript	ncRNA
48061	chr12	7091921	7092800	+	0	NA	promoter-TSS (NM_001354346)	promoter-TSS (NM_001354346)	85	NM_001733	715		NM_001733	ENSG00000159403	C1R	EDS8|EDSPD1	complement C1r	protein-coding
124781	chr2	7430251	7432130	+	0	NA	intron (NR_038432, intron 4 of 5)	CpG	9929	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
141692	chr2	241815171	241815600	+	0	NA	intron (NM_001167601, intron 3 of 3).2	intron (NM_001167601, intron 3 of 3).2	3989	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
112028	chr19	5077001	5077200	+	0	NA	intron (NM_001370093, intron 7 of 11)	intron (NM_001370093, intron 7 of 11)	107987	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
80437	chr16	2646301	2647580	+	0	NA	TTS (NR_024492)	TTS (NR_024492)	7958	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
198189	chr6	96836601	96837780	+	0	NA	intron (NM_001143957, intron 1 of 2)	CpG	287	NM_001143957	81491		NM_030784	ENSG00000112218	GPR63	PSP24(beta)|PSP24B	G protein-coupled receptor 63	protein-coding
149151	chr21	17799121	17799900	+	0	NA	intron (NM_017447, intron 2 of 4)	intron (NM_017447, intron 2 of 4)	-7001	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
18136	chr1	160745421	160745680	+	0	NA	intron (NM_001282590, intron 1 of 5)	MIRb|SINE|MIR	6303	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
180021	chr5	1045151	1045450	+	0	NA	Intergenic	Intergenic	17674	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
77317	chr15	82443071	82443480	+	0	NA	TTS (NR_120378)	TTS (NR_120378)	1594	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
44540	chr11	108025621	108025880	+	0	NA	intron (NM_003478, intron 1 of 18)	L1MEc|LINE|L1	16852	NM_003478	8065		NM_003478	ENSG00000166266	CUL5	CUL-5|VACM-1|VACM1	cullin 5	protein-coding
107102	chr18	35052901	35053400	+	0	NA	intron (NR_046177, intron 1 of 6)	AluSz|SINE|Alu	11737	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
89910	chr16	89704321	89705180	+	0	NA	Intergenic	AluJo|SINE|Alu	-3045	NM_152339	124044		NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
233835	chrX	1496101	1497400	+	0	NA	intron (NM_178129, intron 1 of 1)	AluSg4|SINE|Alu	40435	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
191119	chr6	4029901	4030250	+	0	NA	intron (NR_146785, intron 1 of 20)	AluSx|SINE|Alu	8775	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
132659	chr2	108742171	108742330	+	0	NA	intron (NM_006267, intron 7 of 28)	AluSp|SINE|Alu	22768	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
157543	chr22	45553821	45554100	+	0	NA	intron (NM_006486, intron 14 of 16)	intron (NM_006486, intron 14 of 16)	51077	NM_006486	2192		NM_001996	ENSG00000077942	FBLN1	FBLN|FIBL1	fibulin 1	protein-coding
202657	chr6	158777451	158777550	+	0	NA	intron (NM_003379, intron 6 of 12)	intron (NM_003379, intron 6 of 12)	-12747	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
86683	chr16	67517971	67518280	+	0	NA	non-coding (NR_104656, exon 2 of 2)	non-coding (NR_104656, exon 2 of 2)	10620	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
62310	chr13	99033751	99034080	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-18130	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
169094	chr3	154321151	154321250	+	0	NA	intron (NM_020865, intron 1 of 24)	MER112|DNA|hAT-Charlie	3287	NM_020865	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
51704	chr12	53191101	53191380	+	0	NA	TTS (NM_000889)	TTS (NM_000889)	-10315	NM_001244705	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
190501	chr5	180372021	180372280	+	0	NA	Intergenic	Intergenic	-18814	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
159150	chr3	12718871	12719030	+	0	NA	Intergenic	AluYk3|SINE|Alu	40309	NM_001284407	55287		NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
2588	chr1	9833371	9833530	+	0	NA	Intergenic	AluJr|SINE|Alu	-8924	NM_014944	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
218259	chr8	42177301	42178100	+	0	NA	intron (NM_033011, intron 12 of 12)	intron (NM_033011, intron 12 of 12)	24637	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
84055	chr16	29582901	29583730	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSc8|SINE|Alu	11777	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
130905	chr2	87460601	87461530	+	0	NA	intron (NR_024206, intron 1 of 1)	intron (NR_024206, intron 1 of 1)	5638	NR_024206	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
175842	chr4	78661921	78662180	+	0	NA	intron (NR_038306, intron 2 of 2)	intron (NR_038306, intron 2 of 2)	16056	NR_038304	100505702		NR_038303		LINC01094	CTEPHA1	long intergenic non-protein coding RNA 1094	ncRNA
137862	chr2	200826301	200826900	+	0	NA	3' UTR (NM_001321693, exon 11 of 11)	3' UTR (NM_001321693, exon 11 of 11)	14214	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
147271	chr20	57476201	57476400	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	48567	NM_001269052	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
233769	chrX	1415921	1416180	+	0	NA	TTS (NR_026711)	TTS (NR_026711)	15519	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
187743	chr5	143606301	143606580	+	0	NA	Intergenic	Intergenic	-73420	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
221932	chr8	129874801	129875200	+	0	NA	intron (NM_001353280, intron 4 of 12)	intron (NM_001353280, intron 4 of 12)	64811	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
103767	chr17	78985901	78986400	+	0	NA	Intergenic	L1MD3|LINE|L1	-6227	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
91790	chr17	7018801	7019200	+	0	NA	promoter-TSS (NR_030178)	promoter-TSS (NR_030178)	654	NR_038310	100506755		NR_038310	ENSG00000267532	MIR497HG	MIR195HG	mir-497-195 cluster host gene	ncRNA
6598	chr1	28774871	28775850	+	0	NA	Intergenic	CpG	-36810	NM_000911	4985		NM_000911	ENSG00000116329	OPRD1	DOP|DOR|DOR1|OPRD	opioid receptor delta 1	protein-coding
32446	chr10	102615151	102615730	+	0	NA	intron (NM_001178133, intron 9 of 10)	intron (NM_001178133, intron 9 of 10)	-29039	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
186153	chr5	134172701	134173600	+	0	NA	intron (NM_170679, intron 2 of 5)	AluSp|SINE|Alu	3800	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
85311	chr16	49492101	49492500	+	0	NA	intron (NM_001379286, intron 7 of 7)	intron (NM_001379286, intron 7 of 7)	26285	NR_144553	1596		NR_144553	ENSG00000260089	ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
81319	chr16	4704721	4704980	+	0	NA	intron (NM_133450, intron 8 of 17)	intron (NM_133450, intron 8 of 17)	11132	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
101445	chr17	67440201	67441930	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-30424	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
108648	chr18	76599121	76599380	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-20527	NR_120419	400660		NR_120419	ENSG00000266256	LINC00683	-	long intergenic non-protein coding RNA 683	ncRNA
224115	chr9	4653851	4654550	+	0	NA	intron (NM_001353491, intron 3 of 14)	L1MB7|LINE|L1	8023	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
165419	chr3	98038801	98039880	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-4036	NR_047685	200959		NM_001105580	ENSG00000183185	GABRR3	-	gamma-aminobutyric acid type A receptor subunit rho3	protein-coding
130655	chr2	86192951	86193250	+	0	NA	promoter-TSS (NR_039939)	promoter-TSS (NR_039939)	8	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
36040	chr11	2926701	2926900	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	2620	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
53077	chr12	57730751	57731050	+	0	NA	exon (NM_001122772, exon 11 of 19)	exon (NM_001122772, exon 11 of 19)	4660	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
66567	chr14	63383421	63384080	+	0	NA	intron (NR_104104, intron 11 of 12)	intron (NR_104104, intron 11 of 12)	-64815	NM_145171	122876		NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone subunit beta 5	protein-coding
91765	chr17	6862371	6862950	+	0	NA	intron (NR_002710, intron 2 of 13)	L1PA15|LINE|L1	9084	NR_002710	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
228233	chr9	97918101	97919000	+	0	NA	intron (NM_001371657, intron 1 of 5)	intron (NM_001371657, intron 1 of 5)	3631	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
98822	chr17	48406451	48406750	+	0	NA	intron (NM_001075099, intron 1 of 12)	AluSx1|SINE|Alu	23614	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
41626	chr11	66465971	66468450	+	0	NA	intron (NM_001243136, intron 1 of 5)	CpG	305	NM_145065	246330		NM_145065	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
214382	chr7	149770971	149772600	+	0	NA	intron (NM_207336, intron 1 of 4)	CpG	1803	NM_207336	168544		NM_207336	ENSG00000181444	ZNF467	EZI|Zfp467	zinc finger protein 467	protein-coding
127585	chr2	42792021	42793900	+	0	NA	promoter-TSS (NM_012205)	promoter-TSS (NM_012205)	-377	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
157270	chr22	44023751	44025300	+	0	NA	intron (NM_013327, intron 1 of 12)	CpG	223	NM_013327	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
162817	chr3	49133351	49134450	+	0	NA	promoter-TSS (NM_002292)	promoter-TSS (NM_002292)	-850	NM_002292	3913		NM_002292	ENSG00000172037	LAMB2	LAMS|NPHS5|PIERS	laminin subunit beta 2	protein-coding
156965	chr22	42396721	42397650	+	0	NA	intron (NM_145912, intron 4 of 5)	(GGCT)n|Simple_repeat|Simple_repeat	-27977	NR_120595	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
229923	chr9	126625671	126626730	+	0	NA	intron (NM_001174147, intron 2 of 7)	CpG	12272	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
98993	chr17	48743251	48743350	+	0	NA	Intergenic	Intergenic	-14550	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
206344	chr7	30343921	30344180	+	0	NA	intron (NM_147128, intron 2 of 4)	AluSx1|SINE|Alu	-26000	NR_002186	222161		NM_152747		DKFZP586I1420	-	uncharacterized protein DKFZp586I1420	pseudo
107474	chr18	47025651	47025750	+	0	NA	intron (NM_001353908, intron 3 of 11)	intron (NM_001353908, intron 3 of 11)	9917	NM_016427	51224		NM_016427	ENSG00000206181	ELOA2	HsT832|TCEB3B|TCEB3L	elongin A2	protein-coding
219721	chr8	81019571	81019930	+	0	NA	intron (NM_018440, intron 3 of 8)	THE1B-int|LTR|ERVL-MaLR	92318	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
154127	chr22	31161471	31161900	+	0	NA	intron (NR_024212, intron 1 of 5)	intron (NR_024212, intron 1 of 5)	1503	NM_152267	91445		NM_152267	ENSG00000138942	RNF185	-	ring finger protein 185	protein-coding
111359	chr19	3684101	3684500	+	0	NA	intron (NM_001300849, intron 1 of 16)	intron (NM_001300849, intron 1 of 16)	16168	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
106023	chr18	8367371	8367530	+	0	NA	promoter-TSS (NR_024419)	promoter-TSS (NR_024419)	-416	NR_024419	100192426		NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA
52092	chr12	54106321	54106680	+	0	NA	intron (NR_026655, intron 1 of 1)	CpG	4291	NR_026657	100240734		NR_026657		LOC100240734	-	uncharacterized LOC100240734	ncRNA
160530	chr3	30654901	30656400	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	49049	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
31644	chr10	97396771	97396930	+	0	NA	intron (NM_015179, intron 2 of 33)	AluSz6|SINE|Alu	4490	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
177499	chr4	114598201	114599330	+	0	NA	promoter-TSS (NM_001322114)	promoter-TSS (NM_001322114)	-42	NM_001128174	7368		NM_003360	ENSG00000174607	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding
231748	chr9	132145151	132145250	+	0	NA	Intergenic	MIRb|SINE|MIR	-16858	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
2396	chr1	9539051	9540250	+	0	NA	5' UTR (NM_032315, exon 1 of 7)	5' UTR (NM_032315, exon 1 of 7)	185	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
146850	chr20	51432271	51432430	+	0	NA	exon (NM_001258296, exon 9 of 11)	exon (NM_001258296, exon 9 of 11)	20627	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
199390	chr6	116283071	116283680	+	0	NA	intron (NM_001080976, intron 1 of 5)	intron (NM_001080976, intron 1 of 5)	3289	NR_136524	29940		NM_013352	ENSG00000111817	DSE	DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
103510	chr17	78435201	78435400	+	0	NA	intron (NM_173628, intron 74 of 80)	intron (NM_173628, intron 74 of 80)	-49610	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
187644	chr5	143022871	143023030	+	0	NA	intron (NR_146198, intron 12 of 22)	intron (NR_146198, intron 12 of 22)	-154040	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
148576	chr21	5032351	5032450	+	0	NA	intron (NM_001283050, intron 5 of 6).2	AluY|SINE|Alu	9846	NM_001283050	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
213011	chr7	131013171	131014100	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	93395	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
121039	chr19	45816371	45816530	+	0	NA	intron (NM_004819, intron 25 of 26)	intron (NM_004819, intron 25 of 26)	-1142	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
236570	chrX	72308551	72309350	+	0	NA	Intergenic	Intergenic	-1793	NM_001144886	4435		NM_004143	ENSG00000125931	CITED1	MSG1	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1	protein-coding
238856	chrX	154485351	154485450	+	0	NA	3' UTR (NM_014235, exon 4 of 4)	3' UTR (NM_014235, exon 4 of 4)	1215	NM_014235	8266		NM_014235	ENSG00000102178	UBL4A	DX254E|DXS254E|G6PD|GDX|GET5|MDY2|TMA24|UBL4	ubiquitin like 4A	protein-coding
8660	chr1	41849951	41850380	+	0	NA	intron (NR_038260, intron 1 of 2)	MER5A|DNA|hAT-Charlie	68757	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
42424	chr11	69088401	69089030	+	0	NA	3' UTR (NM_139075, exon 25 of 25)	3' UTR (NM_139075, exon 25 of 25)	5539	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
1074	chr1	1918751	1921400	+	0	NA	promoter-TSS (NM_178545)	promoter-TSS (NM_178545)	-796	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
156851	chr22	41998151	41999650	+	0	NA	TTS (NM_019106)	TTS (NM_019106)	112	NM_152613	164684		NM_152613	ENSG00000183066	WBP2NL	GRAMD7|PAWP	WBP2 N-terminal like	protein-coding
78684	chr15	95865471	95865900	+	0	NA	Intergenic	Intergenic	262156	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
25803	chr10	11187751	11188680	+	0	NA	intron (NM_001326346, intron 2 of 11)	AluSp|SINE|Alu	23185	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
227813	chr9	93237651	93237950	+	0	NA	intron (NM_001282394, intron 4 of 29)	intron (NM_001282394, intron 4 of 29)	52870	NM_006648	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
188478	chr5	154762901	154763100	+	0	NA	intron (NM_001367719, intron 1 of 18)	MIR|SINE|MIR	5846	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
96849	chr17	41981671	41982030	+	0	NA	intron (NM_003315, intron 12 of 13)	intron (NM_003315, intron 12 of 13)	14053	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
181675	chr5	50440171	50441980	+	0	NA	exon (NM_198449, exon 1 of 9)	exon (NM_198449, exon 1 of 9)	213	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
179697	chr4	190116071	190116430	+	0	NA	Intergenic	MER92-int|LTR|ERV1	51021	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
58175	chr12	124986971	124987450	+	0	NA	intron (NM_032656, intron 1 of 26)	AluSz6|SINE|Alu	1921	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
70392	chr14	101960051	101960480	+	0	NA	Intergenic	AluSp|SINE|Alu	-4308	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
192880	chr6	27472221	27473950	+	0	NA	promoter-TSS (NM_001347832)	promoter-TSS (NM_001347832)	20	NM_001318893	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
28826	chr10	62369201	62370200	+	0	NA	intron (NR_104162, intron 1 of 3)	MIRb|SINE|MIR	-4457	NM_199450	22891		NM_014951	ENSG00000138311	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
57691	chr12	122846401	122847150	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	11318	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
203582	chr7	918021	918280	+	0	NA	intron (NM_006869, intron 4 of 10)	AluSz|SINE|Alu	2739	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
232381	chr9	135960601	135961980	+	0	NA	promoter-TSS (NM_016172)	promoter-TSS (NM_016172)	83	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
233228	chr9	137239951	137242300	+	0	NA	promoter-TSS (NM_006088)	promoter-TSS (NM_006088)	-162	NM_006088	10383		NM_006088	ENSG00000188229	TUBB4B	Beta2|LCAEOD|TUBB2|TUBB2C	tubulin beta 4B class IVb	protein-coding
185133	chr5	119302671	119303780	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	-29950	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
62411	chr13	99293071	99293580	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	14074	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
74629	chr15	60722121	60722650	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	40816	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
6948	chr1	31753351	31753450	+	0	NA	intron (NM_001294336, intron 4 of 31)	intron (NM_001294336, intron 4 of 31)	5335	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
112539	chr19	6527901	6528600	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-2776	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
163305	chr3	50347151	50348700	+	0	NA	intron (NM_006545, intron 9 of 10)	intron (NM_006545, intron 9 of 10)	-2193	NM_001308379	51364		NM_015896	ENSG00000004838	ZMYND10	BLU|CILD22|DNAAF7|FLU	zinc finger MYND-type containing 10	protein-coding
77359	chr15	82749451	82749550	+	0	NA	Intergenic	Intergenic	-1064	NR_110098	100505616		NR_110096	ENSG00000250988	SNHG21	FSD2-AS1|SCARNA15HG	small nucleolar RNA host gene 21	ncRNA
150608	chr21	43364021	43364750	+	0	NA	Intergenic	Intergenic	-2036	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
83578	chr16	28145801	28146000	+	0	NA	intron (NM_001270940, intron 10 of 24)	intron (NM_001270940, intron 10 of 24)	66065	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
90641	chr17	1662321	1663050	+	0	NA	intron (NM_006445, intron 24 of 42)	AluSx|SINE|Alu	-12819	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
130036	chr2	74417701	74418150	+	0	NA	promoter-TSS (NM_001145054)	promoter-TSS (NM_001145054)	-208	NM_001145054	388963		NM_001145054	ENSG00000284308	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
101363	chr17	67222971	67223330	+	0	NA	intron (NM_001330447, intron 3 of 32)	AluY|SINE|Alu	-21626	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
113202	chr19	8448071	8448230	+	0	NA	intron (NM_031203, intron 1 of 16)	intron (NM_031203, intron 1 of 16)	3175	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
12516	chr1	108378971	108379130	+	0	NA	Intergenic	Intergenic	-71293	NM_001143987	653149		NM_001143987	ENSG00000186086	NBPF6	-	NBPF member 6	protein-coding
145830	chr20	45810871	45811030	+	0	NA	intron (NM_052951, intron 12 of 12)	intron (NM_052951, intron 12 of 12)	-1626	NM_001281742	11065		NM_007019	ENSG00000175063	UBE2C	UBCH10|dJ447F3.2	ubiquitin conjugating enzyme E2 C	protein-coding
66428	chr14	61524901	61525980	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	44754	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
11112	chr1	86391371	86391530	+	0	NA	intron (NM_020729, intron 1 of 17)	L1PB1|LINE|L1	4611	NM_001366784	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
238364	chrX	149913301	149913500	+	0	NA	Intergenic	L1PA7|LINE|L1	-16173	NM_001351114	101927685		NM_001351114	ENSG00000283463	HSFX4	-	heat shock transcription factor family, X-linked member 4	protein-coding
223564	chr8	144261471	144261830	+	0	NA	TTS (NM_015201)	TTS (NM_015201)	1087	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
144391	chr20	35250551	35251280	+	0	NA	intron (NM_006690, intron 2 of 8)	intron (NM_006690, intron 2 of 8)	24225	NM_006690	10893		NM_006690	ENSG00000125966	MMP24	MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding
64745	chr14	34550551	34550650	+	0	NA	Intergenic	Intergenic	3886	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
154390	chr22	35297451	35298050	+	0	NA	Intergenic	AluY|SINE|Alu	-1525	NM_001135729	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
150958	chr21	44315401	44316000	+	0	NA	intron (NM_001002021, intron 10 of 24)	intron (NM_001002021, intron 10 of 24)	15647	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
114310	chr19	11931151	11931250	+	0	NA	intron (NM_144566, intron 1 of 3)	MLT1A|LTR|ERVL-MaLR	6093	NM_144566	90592		NM_144566	ENSG00000196757	ZNF700	-	zinc finger protein 700	protein-coding
6330	chr1	27670401	27670750	+	0	NA	intron (NM_022872, intron 1 of 4)	AluJb|SINE|Alu	1617	NM_002038	2537		NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon alpha inducible protein 6	protein-coding
15085	chr1	148515551	148516330	+	0	NA	Intergenic	Intergenic	-32638	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
155831	chr22	39399401	39400780	+	0	NA	intron (NM_153497, intron 1 of 10)	CpG	310	NM_153497	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
199127	chr6	111703671	111703830	+	0	NA	intron (NM_001370529, intron 5 of 11)	intron (NM_001370529, intron 5 of 11)	55381	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
129220	chr2	68237751	68238430	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	14442	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
49259	chr12	19462071	19462230	+	0	NA	intron (NM_001267043, intron 1 of 8)	intron (NM_001267043, intron 1 of 8)	21551	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
56852	chr12	120256671	120256830	+	0	NA	intron (NM_001080855, intron 1 of 11)	AluSx|SINE|Alu	-6587	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
71294	chr14	105294171	105294780	+	0	NA	intron (NM_001242787, intron 1 of 17)	intron (NM_001242787, intron 1 of 17)	-6299	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
186206	chr5	134366771	134367730	+	0	NA	promoter-TSS (NM_001113575)	promoter-TSS (NM_001113575)	-79	NM_001113575	51265		NM_016508	ENSG00000006837	CDKL3	NKIAMRE	cyclin dependent kinase like 3	protein-coding
173408	chr4	8115271	8115430	+	0	NA	intron (NM_001130086, intron 1 of 17)	intron (NM_001130086, intron 1 of 17)	-43362	NM_001286688	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
136668	chr2	180977571	180977730	+	0	NA	Intergenic	Intergenic	-2735	NM_001278555	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
115596	chr19	16033171	16033330	+	0	NA	promoter-TSS (NR_024335)	promoter-TSS (NR_024335)	-463	NR_024335	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
128930	chr2	64528671	64529030	+	0	NA	intron (NM_203437, intron 1 of 9)	L2a|LINE|L2	3337	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
148168	chr20	63529251	63529930	+	0	NA	exon (NM_005975, exon 8 of 8)	exon (NM_005975, exon 8 of 8)	7780	NM_001256358	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
155516	chr22	38689021	38689680	+	0	NA	exon (NM_001360236, exon 3 of 5)	exon (NM_001360236, exon 3 of 5)	7393	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
218611	chr8	56068301	56069450	+	0	NA	intron (NM_001146227, intron 5 of 5)	AluSx|SINE|Alu	5026	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
10615	chr1	67766171	67766780	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	-65813	NR_040077	100289178		NR_040077	ENSG00000232284	GNG12-AS1	-	GNG12, DIRAS3 and WLS antisense RNA 1	ncRNA
26536	chr10	21516771	21517660	+	0	NA	exon (NM_207371, exon 4 of 4)	exon (NM_207371, exon 4 of 4)	8467	NM_207371	387640		NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
35438	chr11	1443921	1444980	+	0	NA	intron (NM_001256630, intron 8 of 19)	intron (NM_001256630, intron 8 of 19)	33298	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
101069	chr17	64840371	64840630	+	0	NA	Intergenic	Intergenic	-3316	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
231067	chr9	129644071	129644630	+	0	NA	Intergenic	AluSx|SINE|Alu	-2181	NM_001202403	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
221984	chr8	129998101	129998300	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	10253	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
132211	chr2	102185451	102185630	+	0	NA	Intergenic	Intergenic	-1433	NM_001351447	8808		NM_003854	ENSG00000115598	IL1RL2	IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2	interleukin 1 receptor like 2	protein-coding
199292	chr6	111989471	111990250	+	0	NA	Intergenic	Intergenic	-64244	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
185716	chr5	132026351	132027550	+	0	NA	Intergenic	Intergenic	-14882	NM_001205250	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
80729	chr16	3108201	3108630	+	0	NA	Intergenic	AluY|SINE|Alu	-4164	NM_001278158	7755		NM_003456	ENSG00000122386	ZNF205	RhitH|ZNF210|Zfp13	zinc finger protein 205	protein-coding
46797	chr11	130212951	130213650	+	0	NA	Intergenic	Intergenic	53518	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
10774	chr1	77312471	77312830	+	0	NA	intron (NM_174858, intron 5 of 13)	intron (NM_174858, intron 5 of 13)	29563	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
27043	chr10	27099451	27102480	+	0	NA	promoter-TSS (NM_001256053)	promoter-TSS (NM_001256053)	-471	NM_001256053	22852		NM_014915	ENSG00000107890	ANKRD26	THC2|bA145E8.1	ankyrin repeat domain containing 26	protein-coding
104500	chr17	81200751	81201250	+	0	NA	intron (NM_014984, intron 7 of 25)	L1ME2|LINE|L1	21965	NM_001319228	22994		NM_014984	ENSG00000141577	CEP131	AZ1|AZI1|ZA1	centrosomal protein 131	protein-coding
224054	chr9	3520701	3521350	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	4976	NM_002919	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
214001	chr7	143003151	143003810	+	0	NA	intron (NM_001363538, intron 9 of 11)	intron (NM_001363538, intron 9 of 11)	23652	NM_001001658	135924		NM_001001658	ENSG00000179468	OR9A2	-	olfactory receptor family 9 subfamily A member 2	protein-coding
228914	chr9	113067001	113067500	+	0	NA	Intergenic	Intergenic	-10526	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
69403	chr14	94052421	94052680	+	0	NA	intron (NM_020414, intron 8 of 8).2	MIR|SINE|MIR	26210	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
25363	chr10	6408921	6409180	+	0	NA	intron (NM_001323267, intron 17 of 17)	L1M5|LINE|L1	58734	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
4529	chr1	21904971	21905330	+	0	NA	intron (NM_001291860, intron 1 of 96)	(AC)n|Simple_repeat|Simple_repeat	32160	NM_005529	3339		NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
22240	chr1	212610801	212611500	+	0	NA	intron (NM_001206484, intron 2 of 4)	intron (NM_001206484, intron 2 of 4)	2389	NM_001206484	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
211681	chr7	106524371	106524930	+	0	NA	Intergenic	Intergenic	136508	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
3167	chr1	12619771	12621230	+	0	NA	Intergenic	MIRb|SINE|MIR	-2290	NM_004753	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
148196	chr20	63555721	63557400	+	0	NA	exon (NM_001319153, exon 2 of 2)	exon (NM_001319153, exon 2 of 2)	2401	NM_001319152	79025		NM_024059	ENSG00000125531	FNDC11	C20orf195	fibronectin type III domain containing 11	protein-coding
115568	chr19	15760171	15760330	+	0	NA	non-coding (NR_033864, exon 10 of 10)	non-coding (NR_033864, exon 10 of 10)	18857	NM_013938	26532		NM_013938	ENSG00000171936	OR10H3	-	olfactory receptor family 10 subfamily H member 3	protein-coding
136696	chr2	181131521	181132000	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	7923	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
50248	chr12	46250021	46250480	+	0	NA	intron (NM_001077484, intron 1 of 16)	L1PA6|LINE|L1	16266	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
214334	chr7	149406571	149406830	+	0	NA	Intergenic	(AAAT)n|Simple_repeat|Simple_repeat	54362	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
121528	chr19	47229101	47229800	+	0	NA	intron (NM_001127240, intron 1 of 3)	intron (NM_001127240, intron 1 of 3)	1749	NM_014417	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
236190	chrX	65668401	65669300	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	1196	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
96532	chr17	40351271	40351430	+	0	NA	intron (NM_000964, intron 4 of 8)	intron (NM_000964, intron 4 of 8)	-8214	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
124257	chr19	57664151	57664830	+	0	NA	intron (NM_001384833, intron 3 of 6)	CpG	-4445	NM_152677	201516		NM_152677	ENSG00000180532	ZSCAN4	ZNF494	zinc finger and SCAN domain containing 4	protein-coding
194150	chr6	32037351	32038250	+	0	NA	promoter-TSS (NM_000500)	promoter-TSS (NM_000500)	-615	NM_001368144	1589		NM_000500	ENSG00000231852	CYP21A2	CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B	cytochrome P450 family 21 subfamily A member 2	protein-coding
136940	chr2	190277371	190277750	+	0	NA	intron (NM_198047, intron 6 of 12)	intron (NM_198047, intron 6 of 12)	42266	NM_198047	26275		NM_014362	ENSG00000198130	HIBCH	HIBYLCOAH	3-hydroxyisobutyryl-CoA hydrolase	protein-coding
103048	chr17	77143171	77143550	+	0	NA	intron (NM_001039573, intron 2 of 17)	intron (NM_001039573, intron 2 of 17)	2391	NM_001143998	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
175275	chr4	67531471	67531850	+	0	NA	intron (NR_155754, intron 4 of 18)	MER68B|LTR|ERVL	13843	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
30443	chr10	79066951	79068200	+	0	NA	promoter-TSS (NR_015429)	promoter-TSS (NR_015429)	-127	NR_024429	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
78810	chr15	99562251	99562680	+	0	NA	Intergenic	Intergenic	-2952	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
54826	chr12	94831171	94831530	+	0	NA	Intergenic	Intergenic	-3048	NR_030171	574449		NR_030171	ENSG00000283998	MIR492	MIRN492|hsa-mir-492	microRNA 492	ncRNA
59137	chr13	21437501	21437700	+	0	NA	intron (NM_153251, intron 1 of 11)	Tigger1|DNA|TcMar-Tigger	21703	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
24175	chr1	235878751	235879280	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	4693	NM_001301365	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
18602	chr1	165647471	165647630	+	0	NA	intron (NM_004528, intron 1 of 5)	MIRb|SINE|MIR	16316	NM_004528	4259		NM_004528	ENSG00000143198	MGST3	GST-3|GST-III	microsomal glutathione S-transferase 3	protein-coding
134493	chr2	143290801	143291200	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	161581	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
123737	chr19	55061421	55061730	+	0	NA	intron (NM_138412, intron 2 of 7).5	AluJb|SINE|Alu	1573	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
201962	chr6	152169421	152169750	+	0	NA	intron (NM_033071, intron 129 of 145)	AluY|SINE|Alu	-1298	NM_001347702	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
135095	chr2	157354451	157354750	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	25909	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
19650	chr1	180234571	180235500	+	0	NA	intron (NM_033343, intron 1 of 5)	CpG-2007	4771	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
208263	chr7	65750351	65752450	+	0	NA	promoter-TSS (NR_103527)	promoter-TSS (NR_103527)	295	NR_003110	643253		NR_003110	ENSG00000291124	CCT6P1	CCT6-5P|CCT6AP1	chaperonin containing TCP1 subunit 6 pseudogene 1	pseudo
63383	chr13	114059321	114060230	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	18180	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171936	chr4	878571	880600	+	0	NA	intron (NM_001318134, intron 12 of 24)	L1MEc|LINE|L1	52731	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
86585	chr16	67242221	67242980	+	0	NA	intron (NM_001318202, intron 1 of 23)	intron (NM_001318202, intron 1 of 23)	4881	NM_001318202	29109		NM_013241	ENSG00000135723	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
85410	chr16	50312371	50313150	+	0	NA	intron (NM_001114, intron 21 of 25)	intron (NM_001114, intron 21 of 25)	20144	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
110535	chr19	2085001	2086300	+	0	NA	intron (NM_130807, intron 1 of 4)	intron (NM_130807, intron 1 of 4)	10676	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
225846	chr9	38067971	38068300	+	0	NA	exon (NM_003028, exon 1 of 6)	exon (NM_003028, exon 1 of 6)	1092	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
223105	chr8	143437621	143438280	+	0	NA	3' UTR (NM_015117, exon 12 of 12)	3' UTR (NM_015117, exon 12 of 12)	-7218	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
768	chr1	1517301	1517700	+	0	NA	intron (NM_018188, intron 3 of 15)	CpG	4970	NM_001170536	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
122553	chr19	49653571	49654280	+	0	NA	intron (NM_021228, intron 7 of 10)	intron (NM_021228, intron 7 of 10)	-11217	NM_001282519	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
131264	chr2	96059101	96059300	+	0	NA	Intergenic	Intergenic	-23226	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
237706	chrX	124393271	124393630	+	0	NA	intron (NM_001163279, intron 27 of 31)	intron (NM_001163279, intron 27 of 31)	46887	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
97298	chr17	43214051	43214600	+	0	NA	intron (NM_001291586, intron 4 of 8)	intron (NM_001291586, intron 4 of 8)	2450	NM_001291586	113277		NM_145041	ENSG00000184988	TMEM106A	-	transmembrane protein 106A	protein-coding
93753	chr17	19953871	19954030	+	0	NA	intron (NM_007202, intron 4 of 14)	AluSz|SINE|Alu	23878	NM_007202	11216		NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A-kinase anchoring protein 10	protein-coding
81357	chr16	4833621	4834080	+	0	NA	intron (NR_136700, intron 3 of 14)	intron (NR_136700, intron 3 of 14)	13438	NM_032569	84656		NM_032569	ENSG00000140632	GLYR1	BM045|HIBDL|N-PAC|NP60|NPAC|hNDF	glyoxylate reductase 1 homolog	protein-coding
214280	chr7	149026151	149027080	+	0	NA	intron (NR_163905, intron 1 of 9)	AluSc8|SINE|Alu	-1306	NR_163909	9601		NM_004911	ENSG00000155660	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A member 4	protein-coding
55233	chr12	101832001	101832200	+	0	NA	Intergenic	MIR|SINE|MIR	-1141	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
157372	chr22	44708971	44709200	+	0	NA	intron (NM_181334, intron 1 of 14)	intron (NM_181334, intron 1 of 14)	6881	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
65062	chr14	39368351	39368550	+	0	NA	intron (NM_001354154, intron 23 of 23)	LTR16B1|LTR|ERVL	64050	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
197056	chr6	53543721	53545350	+	0	NA	exon (NM_001197115, exon 1 of 15)	exon (NM_001197115, exon 1 of 15)	566	NM_001197115	2729		NM_001498	ENSG00000001084	GCLC	GCL|GCS|GLCL|GLCLC	glutamate-cysteine ligase catalytic subunit	protein-coding
85151	chr16	46396971	46397350	+	0	NA	Intergenic	(ATCGAATGGA)n|Simple_repeat|Simple_repeat	171937	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
173064	chr4	6169371	6169530	+	0	NA	intron (NM_144720, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	25169	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
81159	chr16	4421021	4421280	+	0	NA	Intergenic	AluSx|SINE|Alu	-4554	NM_024535	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
198969	chr6	110887451	110888800	+	0	NA	intron (NM_001634, intron 2 of 8)	intron (NM_001634, intron 2 of 8)	13341	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
93086	chr17	17632851	17633380	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-41407	NM_001267551	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
216460	chr8	19626821	19627080	+	0	NA	intron (NM_001354476, intron 1 of 8)	L1MD2|LINE|L1	-24405	NM_001354499	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
176627	chr4	99816221	99816990	+	0	NA	promoter-TSS (NM_001306151)	promoter-TSS (NM_001306151)	-222	NM_001306151	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
138716	chr2	213137651	213138150	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	12537	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
100885	chr17	64386151	64386530	+	0	NA	intron (NM_000442, intron 2 of 15)	AluSz6|SINE|Alu	4520	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
45634	chr11	118941921	118942580	+	0	NA	Intergenic	AluSx3|SINE|Alu	-14048	NM_006760	7379		NM_006760	ENSG00000110375	UPK2	UP2|UPII	uroplakin 2	protein-coding
110902	chr19	2739151	2740450	+	0	NA	intron (NM_144564, intron 1 of 2)	L2b|LINE|L2	217	NM_144564	29985		NM_144564	ENSG00000141873	SLC39A3	ZIP-3|ZIP3	solute carrier family 39 member 3	protein-coding
78458	chr15	92879721	92880580	+	0	NA	Intergenic	Intergenic	-2693	NR_037600	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
3586	chr1	16216901	16218330	+	0	NA	Intergenic	CpG	-4963	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
117865	chr19	32519021	32519630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-61865	NM_004708	9141		NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
93273	chr17	18088951	18089280	+	0	NA	intron (NM_001330144, intron 1 of 12)	intron (NM_001330144, intron 1 of 12)	1167	NM_001388	1819		NM_001388	ENSG00000108591	DRG2	-	developmentally regulated GTP binding protein 2	protein-coding
59339	chr13	24559851	24560200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18305	NR_158454	105370295		NR_158453	ENSG00000287376	LOC105370295	-	uncharacterized LOC105370295	ncRNA
85858	chr16	57027351	57027450	+	0	NA	intron (NR_169514, intron 6 of 31)	MIRb|SINE|MIR	37843	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
50951	chr12	49536101	49536700	+	0	NA	Intergenic	Intergenic	-2630	NM_001314030	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
220778	chr8	102535571	102536580	+	0	NA	Intergenic	Intergenic	-15514	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
126143	chr2	26182251	26182550	+	0	NA	5' UTR (NM_001191033, exon 1 of 6)	5' UTR (NM_001191033, exon 1 of 6)	1684	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
234385	chrX	16436571	16436800	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	190400	NR_039762	100616428		NR_039762	ENSG00000265144	MIR548AM	-	microRNA 548am	ncRNA
232506	chr9	136269271	136269450	+	0	NA	intron (NM_001378188, intron 14 of 25)	L1MEc|LINE|L1	-23548	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
109093	chr18	79964101	79965100	+	0	NA	promoter-TSS (NM_001136180)	promoter-TSS (NM_001136180)	-43	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
79162	chr16	284271	284650	+	0	NA	exon (NM_006849, exon 2 of 11)	exon (NM_006849, exon 2 of 11)	1296	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
153258	chr22	24128821	24129330	+	0	NA	intron (NM_012295, intron 28 of 36)	intron (NM_012295, intron 28 of 36)	-52412	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
216791	chr8	22537271	22537530	+	0	NA	intron (NM_001243975, intron 12 of 12)	L1MB8|LINE|L1	-14527	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
154738	chr22	36472471	36473030	+	0	NA	intron (NM_012473, intron 3 of 3)	L1MC2|LINE|L1	8890	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
95680	chr17	38353951	38354250	+	0	NA	intron (NM_014598, intron 1 of 9)	intron (NM_014598, intron 1 of 9)	2256	NM_014598	30837		NM_014598	ENSG00000274211	SOCS7	NAP4|NCKAP4	suppressor of cytokine signaling 7	protein-coding
127753	chr2	43775401	43775830	+	0	NA	intron (NM_016008, intron 1 of 12)	AluJb|SINE|Alu	1576	NM_001348913	51626		NM_015522	ENSG00000138036	DYNC2LI1	CGI-60|D2LIC|LIC3	dynein cytoplasmic 2 light intermediate chain 1	protein-coding
131786	chr2	98501951	98502250	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	56090	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
159509	chr3	14402171	14403750	+	0	NA	intron (NR_103507, intron 1 of 13)	CpG	354	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
196320	chr6	43077621	43077880	+	0	NA	intron (NM_001270398, intron 1 of 19)	intron (NM_001270398, intron 1 of 19)	936	NM_001270398	5754		NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
33903	chr10	124539851	124540550	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	78377	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
67342	chr14	69660771	69661130	+	0	NA	intron (NM_014734, intron 2 of 5)	MER58B|DNA|hAT-Charlie	49354	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
110652	chr19	2243501	2243700	+	0	NA	intron (NM_007165, intron 2 of 8)	intron (NM_007165, intron 2 of 8)	-5723	NM_000479	268		NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
230928	chr9	129381401	129381800	+	0	NA	Intergenic	Intergenic	44677	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
101110	chr17	65013851	65015200	+	0	NA	exon (NM_006572, exon 4 of 4)	exon (NM_006572, exon 4 of 4)	-38940	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
224440	chr9	15350951	15351250	+	0	NA	Intergenic	L2c|LINE|L2	-43740	NM_152574	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
48373	chr12	9443801	9444330	+	0	NA	intron (NR_033399, intron 1 of 26)	intron (NR_033399, intron 1 of 26)	4107	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
189631	chr5	176039321	176039780	+	0	NA	Intergenic	AluY|SINE|Alu	22505	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
23082	chr1	226650601	226650880	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	24328	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
52174	chr12	54298971	54299430	+	0	NA	intron (NM_001136023, intron 1 of 2)	intron (NM_001136023, intron 1 of 2)	1815	NM_001136023	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
117951	chr19	33241201	33242000	+	0	NA	Intergenic	Intergenic	-15750	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
201616	chr6	149389371	149389730	+	0	NA	intron (NM_001369506, intron 4 of 7)	AluSp|SINE|Alu	-10712	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
127904	chr2	46298401	46299850	+	0	NA	intron (NM_001430, intron 1 of 15)	CpG	1718	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
210009	chr7	93146671	93147000	+	0	NA	intron (NM_001350083, intron 1 of 3)	intron (NM_001350083, intron 1 of 3)	1550	NM_152703	219285		NM_152703	ENSG00000177409	SAMD9L	ATXPC|C7DELq|C7orf6|DEL7q|DRIF2|M7MLS1|MLSM7|SCA49|UEF1	sterile alpha motif domain containing 9 like	protein-coding
10254	chr1	64243201	64243800	+	0	NA	intron (NR_158769, intron 7 of 8)	intron (NR_158769, intron 7 of 8)	39877	NM_001366235	148581		NM_152489	ENSG00000177414	UBE2U	-	ubiquitin conjugating enzyme E2 U	protein-coding
72685	chr15	38555351	38555550	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	9364	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
226993	chr9	83620871	83621680	+	0	NA	Intergenic	LTR33|LTR|ERVL	-1774	NM_001256915	414328		NM_001001551	ENSG00000148057	IDNK	C9orf103|bA522I20.2|hGntK	IDNK gluconokinase	protein-coding
200513	chr6	135879871	135881100	+	0	NA	intron (NM_018945, intron 1 of 12)	intron (NM_018945, intron 1 of 12)	28784	NM_018945	27115		NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
188095	chr5	150350401	150351450	+	0	NA	Intergenic	Intergenic	-6714	NM_001135243	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
73510	chr15	43773371	43773730	+	0	NA	TTS (NM_005313)	TTS (NM_005313)	3416	NM_025165	80237		NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
149885	chr21	35932371	35932730	+	0	NA	Intergenic	Intergenic	46105	NR_144547	54036		NR_144547		PPP1R2P2	-	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2	pseudo
48425	chr12	9681401	9681830	+	0	NA	intron (NM_013269, intron 2 of 4)	intron (NM_013269, intron 2 of 4)	11902	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
54051	chr12	75944101	75944950	+	0	NA	Intergenic	Intergenic	87251	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
208686	chr7	73233301	73233700	+	0	NA	intron (NR_003186, intron 5 of 7)	intron (NR_003186, intron 5 of 7)	12861	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
127654	chr2	43156171	43156330	+	0	NA	Intergenic	MIR|SINE|MIR	-53805	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
117601	chr19	21880771	21881030	+	0	NA	Intergenic	LTR13|LTR|ERVK	-28832	NM_001256653	7594		NM_003423	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
108180	chr18	63049751	63050050	+	0	NA	Intergenic	Intergenic	269869	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
140093	chr2	231457751	231458080	+	0	NA	intron (NM_005381, intron 8 of 13)	intron (NM_005381, intron 8 of 13)	-1392	NR_002908	6082		NR_002908	ENSG00000207280	SNORD20	RNU20|U20	small nucleolar RNA, C/D box 20	snoRNA
67708	chr14	73323901	73324500	+	0	NA	intron (NM_003744, intron 4 of 11)	LTR48|LTR|ERV1	-78199	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
130584	chr2	85850451	85850550	+	0	NA	intron (NM_001354226, intron 3 of 6)	intron (NM_001354226, intron 3 of 6)	3671	NM_001354248	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
166942	chr3	125147121	125147580	+	0	NA	intron (NM_024628, intron 5 of 13)	intron (NM_024628, intron 5 of 13)	4202	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
114163	chr19	11353551	11354050	+	0	NA	exon (NM_001080503, exon 9 of 11)	exon (NM_001080503, exon 9 of 11)	-1632	NM_001170635	64748		NM_022737	ENSG00000105520	PLPPR2	LPPR2|PRG4	phospholipid phosphatase related 2	protein-coding
142395	chr20	3824871	3825030	+	0	NA	3' UTR (NM_018347, exon 3 of 3)	3' UTR (NM_018347, exon 3 of 3)	4403	NM_001204447	55317		NM_018347	ENSG00000125843	AP5S1	C20orf29	adaptor related protein complex 5 subunit sigma 1	protein-coding
10432	chr1	66182171	66182740	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-131737	NR_123718	101927139		NR_123718	ENSG00000227466	PDE4B-AS1	-	PDE4B antisense RNA 1	ncRNA
29269	chr10	69175251	69175800	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-4709	NM_003171	6832		NM_003171	ENSG00000156502	SUPV3L1	SUV3	Suv3 like RNA helicase	protein-coding
6712	chr1	29237351	29238850	+	0	NA	intron (NM_133177, intron 1 of 30)	CpG	1578	NM_133177	10076		NM_005704	ENSG00000060656	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	protein tyrosine phosphatase receptor type U	protein-coding
55315	chr12	103906021	103906480	+	0	NA	non-coding (NR_027249, exon 4 of 16)	non-coding (NR_027249, exon 4 of 16)	23961	NR_027249	253724		NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
168748	chr3	151183101	151184100	+	0	NA	intron (NM_053002, intron 10 of 42)	intron (NM_053002, intron 10 of 42)	19616	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
40887	chr11	65123471	65124050	+	0	NA	intron (NR_037568, intron 1 of 2)	AluSx|SINE|Alu	1439	NR_037568	740		NM_004927	ENSG00000149792	MRPL49	C11orf4|L49mt|MRP-L49|NOF|NOF1|mL49	mitochondrial ribosomal protein L49	protein-coding
179374	chr4	183472201	183472580	+	0	NA	Intergenic	Intergenic	27754	NM_017632	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
30819	chr10	86018021	86018280	+	0	NA	intron (NM_017551, intron 4 of 15)	intron (NM_017551, intron 4 of 15)	246638	NR_029907	442911		NR_029907	ENSG00000199104	MIR346	MIRN346|hsa-mir-346|miR-346|miRNA346	microRNA 346	ncRNA
70586	chr14	102676501	102677080	+	0	NA	intron (NM_015156, intron 2 of 11)	SVA_D|Retroposon|SVA	84141	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
166024	chr3	108387901	108388100	+	0	NA	intron (NM_014981, intron 39 of 41)	intron (NM_014981, intron 39 of 41)	76215	NM_001282557	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
212005	chr7	114783551	114783850	+	0	NA	Intergenic	Intergenic	130355	NR_037439	100500896		NR_037439	ENSG00000272230	MIR3666	-	microRNA 3666	ncRNA
144897	chr20	36938421	36938700	+	0	NA	intron (NM_001363733, intron 3 of 15)	AluSc8|SINE|Alu	13148	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
138133	chr2	202301471	202301830	+	0	NA	intron (NM_015934, intron 13 of 14)	L2a|LINE|L2	8599	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
210303	chr7	99462101	99463030	+	0	NA	intron (NM_001003713, intron 1 of 3)	AluSg|SINE|Alu	3602	NM_001198879	100526740		NM_001198879	ENSG00000248919	ATP5MF-PTCD1	ATP5J2-PTCD1	ATP5MF-PTCD1 readthrough	protein-coding
225879	chr9	39463901	39464700	+	0	NA	intron (NR_003528, intron 1 of 4)	(GGCCTG)n|Simple_repeat|Simple_repeat	226	NR_003528	401509		NM_001032297		ZNF658B	-	zinc finger protein 658B (pseudogene)	pseudo
146633	chr20	50194371	50195500	+	0	NA	Intergenic	Intergenic	-2866	NR_125739	101927559		NR_125739	ENSG00000277449	CEBPB-AS1	-	CEBPB antisense RNA 1	ncRNA
161856	chr3	45797901	45798300	+	0	NA	Intergenic	L1ME3|LINE|L1	-1564	NM_020208	54716		NM_020208	ENSG00000163817	SLC6A20	IMINO|SIT1|XT3|Xtrp3	solute carrier family 6 member 20	protein-coding
94910	chr17	31856901	31857300	+	0	NA	intron (NM_018405, intron 1 of 3)	LTR50|LTR|ERVL	1862	NM_001330176	55352		NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
87593	chr16	73122901	73123330	+	0	NA	Intergenic	Intergenic	21332	NR_163978	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
163667	chr3	52224721	52225100	+	0	NA	intron (NM_017442, intron 1 of 1)	intron (NM_017442, intron 1 of 1)	1253	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
201134	chr6	142897821	142898080	+	0	NA	intron (NM_006734, intron 1 of 9)	L2b|LINE|L2	47226	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
4879	chr1	23780871	23781480	+	0	NA	intron (NM_020362, intron 3 of 5)	AluSg|SINE|Alu	2757	NM_020362	57095		NM_020362	ENSG00000057757	PITHD1	C1orf128|HT014|TXNL1CL	PITH domain containing 1	protein-coding
60577	chr13	41812951	41813130	+	0	NA	intron (NM_015058, intron 16 of 44)	intron (NM_015058, intron 16 of 44)	148045	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
45353	chr11	118243501	118244550	+	0	NA	intron (NM_198275, intron 1 of 5)	intron (NM_198275, intron 1 of 5)	8340	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
49779	chr12	31887071	31887230	+	0	NA	promoter-TSS (NR_135029)	promoter-TSS (NR_135029)	53	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
140399	chr2	233082571	233083150	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	22518	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
222477	chr8	140261751	140261850	+	0	NA	intron (NR_164662, intron 14 of 22)	intron (NR_164662, intron 14 of 22)	-161265	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
66646	chr14	63870101	63871280	+	0	NA	intron (NM_015180, intron 1 of 114)	MIR|SINE|MIR	17686	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
43499	chr11	78559971	78560330	+	0	NA	intron (NM_024678, intron 4 of 13)	intron (NM_024678, intron 4 of 13)	14714	NM_024678	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
99055	chr17	48913401	48914130	+	0	NA	intron (NM_023079, intron 3 of 6)	MER105|DNA|hAT-Charlie	-4782	NR_135674	105371814		NR_135674	ENSG00000293025	LOC105371814	-	uncharacterized LOC105371814	ncRNA
155337	chr22	38224901	38225500	+	0	NA	promoter-TSS (NR_132774)	promoter-TSS (NR_132774)	-480	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
3398	chr1	15739371	15740300	+	0	NA	TTS (NR_149050)	TTS (NR_149050)	-2664	NM_001013641	388595		NM_001013641	ENSG00000162460	TMEM82	-	transmembrane protein 82	protein-coding
134215	chr2	134668201	134669250	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	50275	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
182372	chr5	60689051	60689150	+	0	NA	intron (NM_001145208, intron 1 of 9)	MIRb|SINE|MIR	11066	NM_001145208	55789		NM_018369	ENSG00000035499	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
7163	chr1	32246621	32246880	+	0	NA	promoter-TSS (NM_032648)	promoter-TSS (NM_032648)	-472	NM_032648	84734		NM_032648	ENSG00000183615	FAM167B	C1orf90|DIORA-2	family with sequence similarity 167 member B	protein-coding
58733	chr12	132593821	132594680	+	0	NA	Intergenic	L1MEc|LINE|L1	12253	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
88878	chr16	87704901	87705300	+	0	NA	Intergenic	CpG	60886	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
77157	chr15	79969321	79969650	+	0	NA	intron (NM_001114735, intron 1 of 2)	L1ME3G|LINE|L1	1711	NM_001114735	597		NM_004049	ENSG00000140379	BCL2A1	ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1	BCL2 related protein A1	protein-coding
146734	chr20	50733221	50733550	+	0	NA	intron (NM_032521, intron 1 of 2)	AluSq2|SINE|Alu	1805	NM_032521	84612		NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding
90010	chr16	89887001	89887500	+	0	NA	intron (NM_014972, intron 4 of 17)	intron (NM_014972, intron 4 of 17)	13658	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
1793	chr1	6148251	6149050	+	0	NA	intron (NM_015557, intron 9 of 41)	intron (NM_015557, intron 9 of 41)	31671	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
189709	chr5	176522271	176522730	+	0	NA	Intergenic	L1MD2|LINE|L1	14902	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
232887	chr9	136839901	136840780	+	0	NA	exon (NM_001173988, exon 15 of 15)	exon (NM_001173988, exon 15 of 15)	-2138	NM_001080482	389813		NM_001080482	ENSG00000232434	AJM1	C9orf172|ajm-1	apical junction component 1 homolog	protein-coding
102889	chr17	76524621	76525680	+	0	NA	Intergenic	Intergenic	-2436	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
126392	chr2	27572901	27573800	+	0	NA	Intergenic	Intergenic	-3172	NM_032266	84226		NM_032266	ENSG00000221843	SPATA31H1	C2orf16	SPATA31 subfamily H member 1	protein-coding
184538	chr5	102507001	102507200	+	0	NA	Intergenic	Intergenic	-8099	NM_173488	133482		NM_173488	ENSG00000205359	SLCO6A1	CT48|GST|OATP-I|OATP6A1|OATPY	solute carrier organic anion transporter family member 6A1	protein-coding
51930	chr12	53710821	53711080	+	0	NA	non-coding (NR_026554, exon 14 of 14)	non-coding (NR_026554, exon 14 of 14)	16502	NR_026554	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
88171	chr16	81710671	81711150	+	0	NA	3' UTR (NM_198390, exon 21 of 21)	3' UTR (NM_198390, exon 21 of 21)	45556	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
148072	chr20	63286371	63287200	+	0	NA	promoter-TSS (NR_036220)	promoter-TSS (NR_036220)	-23	NR_036220	100422945		NR_036220	ENSG00000266104	MIR4326	mir-4326	microRNA 4326	ncRNA
75478	chr15	66191421	66191730	+	0	NA	intron (NR_169558, intron 1 of 22)	intron (NR_169558, intron 1 of 22)	62175	NR_169556	84465		NM_032445	ENSG00000157890	MEGF11	-	multiple EGF like domains 11	protein-coding
109399	chr19	672101	672330	+	0	NA	Intergenic	AluSq|SINE|Alu	-4177	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
193519	chr6	30585701	30585900	+	0	NA	intron (NM_001090, intron 15 of 23).3	intron (NM_001090, intron 15 of 23).3	1468	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
174554	chr4	40212821	40213490	+	0	NA	intron (NM_001278361, intron 2 of 3)	intron (NM_001278361, intron 2 of 3)	16124	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
117739	chr19	29620651	29621450	+	0	NA	Intergenic	L2b|LINE|L2	14767	NR_027368	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
239397	chrY	22086021	22086530	+	0	NA	intron (NM_004676, intron 2 of 4)	L1PA6|LINE|L1	9732	NM_004676	9081		NM_004676	ENSG00000169789	PRY	PRY1|PTPN13LY	PTPN13 like Y-linked	protein-coding
156185	chr22	40249071	40249850	+	0	NA	intron (NM_015088, intron 2 of 20)	intron (NM_015088, intron 2 of 20)	71535	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
62150	chr13	97017971	97018380	+	0	NA	Intergenic	Intergenic	-23445	NM_001346195	27199		NM_080818	ENSG00000165621	OXGR1	CAON2|GPR80|GPR99|P2RY15|P2Y15|aKGR	oxoglutarate receptor 1	protein-coding
213832	chr7	141654521	141655000	+	0	NA	3' UTR (NM_018238, exon 16 of 16)	3' UTR (NM_018238, exon 16 of 16)	47406	NM_001080392	57189		NM_001080392	ENSG00000257093	DENND11	KIAA1147|LCHN|PRO2561	DENN domain containing 11	protein-coding
196577	chr6	44151171	44152580	+	0	NA	exon (NM_018426, exon 19 of 24)	exon (NM_018426, exon 19 of 24)	-6945	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105487	chr17	83077601	83078000	+	0	NA	Intergenic	MIRc|SINE|MIR	-1809	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
144436	chr20	35479201	35479400	+	0	NA	exon (NM_001318219, exon 16 of 33)	exon (NM_001318219, exon 16 of 33)	19317	NM_001318219	11190		NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1|CRDHL2	centrosomal protein 250	protein-coding
235489	chrX	46903671	46904230	+	0	NA	Intergenic	Intergenic	-4246	NR_046101	724087		NR_046101	ENSG00000204904	LINC01545	CXorf31	long intergenic non-protein coding RNA 1545	ncRNA
167473	chr3	129119921	129121100	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	1294	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
57029	chr12	120686311	120688300	+	0	NA	exon (NM_001303628, exon 1 of 3)	exon (NM_001303628, exon 1 of 3)	156	NM_001303628	9761		NM_014730	ENSG00000110917	MLEC	KIAA0152	malectin	protein-coding
150521	chr21	42926571	42926730	+	0	NA	Intergenic	AluSz|SINE|Alu	-1052	NM_001308491	90625		NM_001308491	ENSG00000233056	ERVH48-1	C21orf105|NDUFV3-AS1|SUPYN	endogenous retrovirus group 48 member 1, envelope	protein-coding
87469	chr16	71564171	71565930	+	0	NA	promoter-TSS (NR_103852)	promoter-TSS (NR_103852)	34	NR_103852	100132529		NR_103851	ENSG00000260886	TAT-AS1	-	TAT antisense RNA 1	ncRNA
208328	chr7	66203121	66203630	+	0	NA	Intergenic	AluJo|SINE|Alu	-1959	NM_003596	8460		NM_003596	ENSG00000169902	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
223282	chr8	143736271	143736900	+	0	NA	intron (NM_001381874, intron 2 of 13)	intron (NM_001381874, intron 2 of 13)	2446	NM_001381874	642574		NM_001381874	ENSG00000203499	IQANK1	CACClnc|FAM83H-AS1|FAM83HAS1|onco-lncRNA-3	IQ motif and ankyrin repeat containing 1	protein-coding
31585	chr10	97347401	97348000	+	0	NA	Intergenic	L2b|LINE|L2	-12971	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
145440	chr20	43471951	43472630	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	14394	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
53007	chr12	57518601	57519000	+	0	NA	TTS (NR_030346)	TTS (NR_030346)	459	NR_030346	693201		NR_030346	ENSG00000208028	MIR616	MIRN616|hsa-mir-616	microRNA 616	ncRNA
36357	chr11	3922171	3922330	+	0	NA	intron (NM_001382571, intron 1 of 9)	L1MB7|LINE|L1	66188	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
223913	chr9	467301	467600	+	0	NA	Intergenic	Intergenic	-2841	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
74091	chr15	52785301	52785980	+	0	NA	intron (NM_004498, intron 1 of 1)	CpG	4696	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
50112	chr12	44875001	44875600	+	0	NA	exon (NM_001145109, exon 2 of 20)	exon (NM_001145109, exon 2 of 20)	361	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
70782	chr14	103518221	103519280	+	0	NA	TTS (NM_001362531)	TTS (NM_001362531)	4080	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
38293	chr11	43392751	43393280	+	0	NA	intron (NM_001376528, intron 5 of 19)	MLT1B|LTR|ERVL-MaLR	34095	NR_164824	55761		NM_018259	ENSG00000052841	TTC17	-	tetratricopeptide repeat domain 17	protein-coding
43563	chr11	83008001	83008550	+	0	NA	intron (NM_001286060, intron 1 of 4)	intron (NM_001286060, intron 1 of 4)	25999	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
106624	chr18	22378721	22378980	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	39065	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
78545	chr15	92974821	92975280	+	0	NA	intron (NM_001271, intron 20 of 38)	intron (NM_001271, intron 20 of 38)	70651	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
155441	chr22	38464421	38464900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3402	NM_016657	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
128637	chr2	61400871	61401030	+	0	NA	intron (NM_014709, intron 3 of 79)	AluSc|SINE|Alu	16427	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
103067	chr17	77278221	77278980	+	0	NA	intron (NR_136503, intron 1 of 2).2	AluSz6|SINE|Alu	-2899	NM_001293695	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
233069	chr9	137083721	137084230	+	0	NA	TTS (NR_027447)	TTS (NR_027447)	2842	NR_027447	100289341		NR_027447	ENSG00000268996	MAN1B1-DT	MAN1B1-AS1	MAN1B1 divergent transcript	ncRNA
85912	chr16	57081701	57081980	+	0	NA	intron (NM_001384955, intron 47 of 47)	MIRb|SINE|MIR	-10743	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
187043	chr5	139850171	139851030	+	0	NA	intron (NM_013981, intron 9 of 9)	intron (NM_013981, intron 9 of 9)	54792	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
220495	chr8	100556021	100556280	+	0	NA	intron (NM_001270377, intron 1 of 4)	AluJr|SINE|Alu	3609	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
140520	chr2	233217951	233218250	+	0	NA	Intergenic	LTR9|LTR|ERV1	-33471	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
68953	chr14	91405111	91405880	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	12325	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
176452	chr4	89296421	89296730	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	11225	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
58105	chr12	124764521	124764780	+	0	NA	Intergenic	Intergenic	75021	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
115547	chr19	15499171	15499350	+	0	NA	Intergenic	Intergenic	-9265	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
25873	chr10	11253301	11253500	+	0	NA	intron (NM_001326330, intron 4 of 12)	intron (NM_001326330, intron 4 of 12)	88370	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
70991	chr14	104717601	104718000	+	0	NA	intron (NM_022489, intron 22 of 22)	intron (NM_022489, intron 22 of 22)	-6429	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
203264	chr6	169698071	169698230	+	0	NA	intron (NR_146876, intron 1 of 15)	intron (NR_146876, intron 1 of 15)	3879	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
132354	chr2	105748871	105749030	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	3887	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
200132	chr6	130229471	130229890	+	0	NA	intron (NM_001258275, intron 2 of 13)	L2c|LINE|L2	-6729	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
41334	chr11	65917371	65918000	+	0	NA	exon (NM_031450, exon 2 of 2)	exon (NM_031450, exon 2 of 2)	1377	NM_031450	83638		NM_031450	ENSG00000175573	C11orf68	BLES03|P5326	chromosome 11 open reading frame 68	protein-coding
8667	chr1	41894071	41894230	+	0	NA	intron (NR_038260, intron 1 of 2)	MIR|SINE|MIR	24772	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
110427	chr19	1969451	1969750	+	0	NA	5' UTR (NM_001319, exon 2 of 12)	5' UTR (NM_001319, exon 2 of 12)	-15051	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
59631	chr13	28122301	28122700	+	0	NA	Intergenic	Intergenic	-16045	NM_175854	255967		NM_175854	ENSG00000152520	PAN3	-	poly(A) specific ribonuclease subunit PAN3	protein-coding
133962	chr2	130596901	130597100	+	0	NA	intron (NM_001270421, intron 3 of 3)	intron (NM_001270421, intron 3 of 3)	2575	NM_001270421	55997		NM_032545	ENSG00000136698	CFC1	CFC1B|CRYPTIC|DTGA2|HTX2	cryptic, EGF-CFC family member 1	protein-coding
239073	chrY	7325121	7325780	+	0	NA	intron (NR_028062, intron 2 of 7)	intron (NR_028062, intron 2 of 7)	51478	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
121739	chr19	47739401	47739600	+	0	NA	intron (NM_014601, intron 5 of 5)	AluSx1|SINE|Alu	-6046	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
170166	chr3	183592051	183592400	+	0	NA	Intergenic	Intergenic	-36519	NM_130446	89857		NM_130446	ENSG00000172578	KLHL6	-	kelch like family member 6	protein-coding
213711	chr7	140242101	140242580	+	0	NA	Intergenic	Intergenic	65079	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
58498	chr12	132166201	132166600	+	0	NA	Intergenic	(CCAT)n|Simple_repeat|Simple_repeat	21943	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
116258	chr19	17617321	17618230	+	0	NA	exon (NM_001080421, exon 39 of 42)	exon (NM_001080421, exon 39 of 42)	62126	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
61750	chr13	74243351	74244630	+	0	NA	intron (NR_144451, intron 1 of 1)	intron (NR_144451, intron 1 of 1)	12546	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
231048	chr9	129625801	129627550	+	0	NA	intron (NM_001286799, intron 1 of 3)	MIRb|SINE|MIR	231	NM_001286799	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
91380	chr17	4562221	4563250	+	0	NA	Intergenic	Intergenic	-2158	NM_001122890	124975		NM_153338	ENSG00000167741	GGT6	-	gamma-glutamyltransferase 6	protein-coding
39666	chr11	61685621	61686550	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	5694	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
106723	chr18	23498521	23499580	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-4420	NM_001276342	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
219021	chr8	64380021	64380280	+	0	NA	TTS (NR_029669)	TTS (NR_029669)	1001	NR_029669	406908		NR_029669	ENSG00000207816	MIR124-2	MIRN124-2|MIRN124A2|mir-124-2	microRNA 124-2	ncRNA
109520	chr19	848571	849000	+	0	NA	TTS (NM_002777)	TTS (NM_002777)	-3518	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
206649	chr7	36198721	36199180	+	0	NA	intron (NM_030636, intron 2 of 7)	intron (NM_030636, intron 2 of 7)	45696	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
148147	chr20	63497951	63498330	+	0	NA	intron (NM_001958, intron 1 of 7)	intron (NM_001958, intron 1 of 7)	943	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
136647	chr2	179989401	179989600	+	0	NA	intron (NM_001376029, intron 2 of 19)	L2a|LINE|L2	10406	NM_001376030	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
115825	chr19	16474421	16474880	+	0	NA	Intergenic	AluY|SINE|Alu	-2638	NR_047665	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
237935	chrX	132219201	132219830	+	0	NA	promoter-TSS (NR_073150)	promoter-TSS (NR_073150)	-35	NM_001271187	57826		NM_021183	ENSG00000123728	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
30484	chr10	79249551	79250230	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-97579	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
191336	chr6	7111301	7111930	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	3654	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
169693	chr3	172046621	172047080	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	6319	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
7533	chr1	34865701	34867180	+	0	NA	intron (NM_001080418, intron 11 of 11)	CpG	-6691	NM_001320261	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
121865	chr19	48270951	48272150	+	0	NA	intron (NM_001331097, intron 2 of 5)	CpG	263	NM_001369812	163071		NM_153608	ENSG00000178150	ZNF114	-	zinc finger protein 114	protein-coding
84682	chr16	30771521	30772330	+	0	NA	exon (NM_001286572, exon 18 of 20)	exon (NM_001286572, exon 18 of 20)	9603	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
160260	chr3	25651951	25652450	+	0	NA	intron (NM_001330700, intron 1 of 35)	L1MB2|LINE|L1	12172	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
3253	chr1	14181271	14181430	+	0	NA	Intergenic	Intergenic	238623	NR_149058	105376762		NR_149058	ENSG00000234593	KAZN-AS1	-	KAZN antisense RNA 1	ncRNA
171705	chr3	197812221	197812550	+	0	NA	intron (NM_001365715, intron 1 of 20)	L1MB3|LINE|L1	21131	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
82759	chr16	21423921	21424430	+	0	NA	intron (NM_130464, intron 2 of 12)	intron (NM_130464, intron 2 of 12)	1203	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
123312	chr19	53575271	53575650	+	0	NA	intron (NM_001317116, intron 4 of 4)	intron (NM_001317116, intron 4 of 4)	20153	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
138512	chr2	207231351	207231650	+	0	NA	intron (NR_110283, intron 3 of 3)	(A)n|Simple_repeat|Simple_repeat	-8311	NR_146555	105373853		NR_146555	ENSG00000229647	MYOSLID	-	myocardin-induced smooth muscle lncRNA, inducer of differentiation	ncRNA
98164	chr17	46058551	46058850	+	0	NA	intron (NM_015443, intron 6 of 14).2	intron (NM_015443, intron 6 of 14).2	59450	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
99238	chr17	49692171	49692330	+	0	NA	Intergenic	AluJr|SINE|Alu	-14087	NM_001007226	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
28853	chr10	62620271	62620700	+	0	NA	Intergenic	Intergenic	-184235	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
152376	chr22	20513601	20514000	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	5753	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
111753	chr19	4369901	4371250	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	27013	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
63344	chr13	114025951	114026050	+	0	NA	intron (NM_001320822, intron 7 of 23).2	intron (NM_001320822, intron 7 of 23).2	-51924	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
232702	chr9	136548321	136549300	+	0	NA	intron (NR_121577, intron 1 of 2)	intron (NR_121577, intron 1 of 2)	968	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
229642	chr9	124216621	124217780	+	0	NA	Intergenic	L2b|LINE|L2	-40406	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
124200	chr19	56393001	56394100	+	0	NA	promoter-TSS (NM_001320371)	promoter-TSS (NM_001320371)	-16	NM_001320371	147948		NM_144690	ENSG00000018869	ZNF582	-	zinc finger protein 582	protein-coding
194107	chr6	31948801	31949580	+	0	NA	intron (NM_001710, intron 8 of 17).3	intron (NM_001710, intron 8 of 17).3	3095	NM_001710	629		NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
65973	chr14	56490421	56490780	+	0	NA	Intergenic	Intergenic	-23731	NR_135241	101927690		NR_135241	ENSG00000258803	LOC101927690	-	uncharacterized LOC101927690	ncRNA
225436	chr9	35079471	35080880	+	0	NA	promoter-TSS (NM_004629)	promoter-TSS (NM_004629)	-233	NM_004629	2189		NM_004629	ENSG00000221829	FANCG	FAG|XRCC9	FA complementation group G	protein-coding
170198	chr3	183895151	183896050	+	0	NA	Intergenic	Intergenic	8800	NR_039650	100616127		NR_039650	ENSG00000263932	MIR4448	-	microRNA 4448	ncRNA
60731	chr13	44293901	44294300	+	0	NA	Intergenic	Intergenic	-79550	NM_001346980	387923		NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
196599	chr6	44227121	44227580	+	0	NA	intron (NM_001304462, intron 3 of 13)	intron (NM_001304462, intron 3 of 13)	3755	NM_001372327	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
101228	chr17	65774551	65774850	+	0	NA	intron (NM_001353127, intron 21 of 26)	intron (NM_001353127, intron 21 of 26)	51751	NM_001037325	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
94635	chr17	30094601	30094980	+	0	NA	intron (NM_198529, intron 22 of 22)	intron (NM_198529, intron 22 of 22)	-22017	NM_001261467	84081		NM_032141	ENSG00000126653	NSRP1	CCDC55|HSPC095|NEDSSBA|NSrp70	nuclear speckle splicing regulatory protein 1	protein-coding
99989	chr17	57698551	57699630	+	0	NA	Intergenic	L3|LINE|CR1	46209	NM_001282544	101927581		NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
131582	chr2	96842601	96843050	+	0	NA	intron (NM_144994, intron 1 of 8)	intron (NM_144994, intron 1 of 8)	1196	NM_144994	200539		NM_144994	ENSG00000163126	ANKRD23	DARP|MARP3	ankyrin repeat domain 23	protein-coding
57197	chr12	121466701	121470080	+	0	NA	intron (NM_001005366, intron 12 of 22)	intron (NM_001005366, intron 12 of 22)	-24038	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
109377	chr19	648901	649450	+	0	NA	intron (NM_194460, intron 6 of 8)	CpG	9280	NM_001300812	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
239379	chrY	20990671	20991330	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	234892	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
113185	chr19	8407951	8408250	+	0	NA	Intergenic	L1MC5|LINE|L1	-5203	NM_001005415	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
144879	chr20	36919701	36920380	+	0	NA	intron (NM_001363733, intron 6 of 15)	intron (NM_001363733, intron 6 of 15)	31668	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
172813	chr4	3040751	3042450	+	0	NA	TTS (NM_005307)	TTS (NM_005307)	32914	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
71467	chr14	105889701	105890130	+	0	NA	Intergenic	Intergenic	-28064	NR_026800	9834		NM_014151	ENSG00000226777	FAM30A	C14orf110|HSPC053|KIAA0125	family with sequence similarity 30 member A	ncRNA
175484	chr4	73191151	73191450	+	0	NA	intron (NM_032217, intron 1 of 33)	L1M5|LINE|L1	31757	NM_001286771	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
51615	chr12	52883201	52883600	+	0	NA	Intergenic	AluSx|SINE|Alu	15584	NR_162090	113218482		NR_162090		MIR9898	-	microRNA 9898	ncRNA
104557	chr17	81338471	81338830	+	0	NA	Intergenic	Intergenic	-7976	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
234559	chrX	19735751	19735850	+	0	NA	intron (NM_001353892, intron 3 of 17)	AluY|SINE|Alu	63973	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
51774	chr12	53333301	53333700	+	0	NA	intron (NM_001300837, intron 2 of 2)	intron (NM_001300837, intron 2 of 2)	2276	NM_152860	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
169794	chr3	174440701	174441500	+	0	NA	Intergenic	CpG	-418234	NM_207015	254827		NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase like 2	protein-coding
121951	chr19	48471901	48472300	+	0	NA	intron (NM_017457, intron 3 of 11)	L2b|LINE|L2	2731	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
111904	chr19	4683651	4684150	+	0	NA	non-coding (NR_164163, exon 3 of 3)	non-coding (NR_164163, exon 3 of 3)	4618	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
193471	chr6	30531151	30531800	+	0	NA	Intergenic	AluSx1|SINE|Alu	15209	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
225897	chr9	39794421	39795250	+	0	NA	Intergenic	Intergenic	15324	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
27084	chr10	27258701	27259550	+	0	NA	intron (NR_138082, intron 1 of 4)	CpG	363	NR_138082	101060171		NR_138082		ODAD2P1	ARMC4P1	outer dynein arm docking complex subunit 2 pseudogene 1	pseudo
102253	chr17	75266971	75267130	+	0	NA	TTS (NM_015971)	TTS (NM_015971)	3195	NM_001242500	57409		NM_020679	ENSG00000125457	MIF4GD	AD023|MIFD|SLIP1	MIF4G domain containing	protein-coding
41653	chr11	66545701	66547080	+	0	NA	promoter-TSS (NM_001258371)	promoter-TSS (NM_001258371)	-5	NM_001258371	89		NM_001104	ENSG00000248746	ACTN3	ACTN3D	actinin alpha 3	protein-coding
233363	chr9	137466001	137466200	+	0	NA	intron (NM_001098537, intron 26 of 34)	MER74B|LTR|ERVL	-6766	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228563	chr9	101711371	101711550	+	0	NA	intron (NM_133445, intron 1 of 8)	MER44D|DNA|TcMar-Tigger	27187	NM_133445	116443		NM_133445	ENSG00000198785	GRIN3A	GluN3A|NMDAR-L|NMDAR3A|NR3A	glutamate ionotropic receptor NMDA type subunit 3A	protein-coding
180721	chr5	29191651	29191750	+	0	NA	Intergenic	L1PA2|LINE|L1	48197	NR_130777	101929660		NR_130777		LINC02109	-	long intergenic non-protein coding RNA 2109	ncRNA
187349	chr5	141682921	141683880	+	0	NA	Intergenic	Intergenic	-1170	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
90147	chr17	138321	138580	+	0	NA	intron (NM_001097610, intron 2 of 2)	intron (NM_001097610, intron 2 of 2)	881	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
124081	chr19	55623801	55625080	+	0	NA	intron (NM_203374, intron 1 of 1)	CpG	126	NM_203374	147808		NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
112728	chr19	7326101	7326330	+	0	NA	Intergenic	L2b|LINE|L2	-22722	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
11248	chr1	88989001	88989230	+	0	NA	intron (NM_001349450, intron 1 of 14)	intron (NM_001349450, intron 1 of 14)	3514	NM_001162536	494115		NM_019610	ENSG00000213516	RBMXL1	RBM1	RBMX like 1	protein-coding
111654	chr19	4214551	4215250	+	0	NA	intron (NM_133475, intron 15 of 21)	intron (NM_133475, intron 15 of 21)	-14623	NM_005755	10148		NM_005755	ENSG00000105246	EBI3	IL-27B|IL27B|IL35B	Epstein-Barr virus induced 3	protein-coding
121601	chr19	47408421	47408680	+	0	NA	intron (NM_020160, intron 8 of 12)	intron (NM_020160, intron 8 of 12)	10977	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
26474	chr10	17655551	17656850	+	0	NA	intron (NM_001324286, intron 1 of 10)	AluSc8|SINE|Alu	12049	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
222499	chr8	140489871	140490230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-21272	NM_017444	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
140377	chr2	233057371	233057950	+	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-2682	NM_005541	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
24416	chr1	243416571	243416730	+	0	NA	intron (NM_001350251, intron 17 of 20).2	intron (NM_001350251, intron 17 of 20).2	70474	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
90349	chr17	1197471	1198490	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	-10708	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
152043	chr22	19522371	19522730	+	0	NA	TTS (NM_001363067)	TTS (NM_001363067)	1860	NM_001363066	7122		NM_003277	ENSG00000184113	CLDN5	AWAL|BEC1|CPETRL1|TMDVCF|TMVCF	claudin 5	protein-coding
224830	chr9	26957671	26957830	+	0	NA	intron (NM_025103, intron 1 of 19)	intron (NM_025103, intron 1 of 19)	1338	NM_025103	80173		NM_025103	ENSG00000096872	IFT74	BBS22|CCDC2|CMG-1|CMG1|JBTS40|SPGF58	intraflagellar transport 74	protein-coding
76923	chr15	78053501	78054050	+	0	NA	intron (NM_144572, intron 2 of 12)	intron (NM_144572, intron 2 of 12)	23877	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
184729	chr5	109590151	109590250	+	0	NA	Intergenic	Intergenic	-99166	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
76892	chr15	77988651	77989050	+	0	NA	Intergenic	Intergenic	5375	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
51254	chr12	51025601	51027180	+	0	NA	promoter-TSS (NM_001174129)	promoter-TSS (NM_001174129)	-6	NR_033421	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
225391	chr9	35041601	35041900	+	0	NA	promoter-TSS (NM_001287391)	promoter-TSS (NM_001287391)	-490	NM_001040410	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
161580	chr3	42961621	42961900	+	0	NA	Intergenic	Intergenic	-17551	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
26732	chr10	22683201	22684100	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	30458	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
150870	chr21	44109401	44109750	+	0	NA	intron (NM_005049, intron 2 of 20).2	intron (NM_005049, intron 2 of 20).2	2176	NM_001368238	102724159		NM_001368238	ENSG00000275464	LOC102724159	-	periodic tryptophan protein 2 homolog	protein-coding
191760	chr6	14066671	14067250	+	0	NA	Intergenic	Intergenic	-50296	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
37916	chr11	34155671	34155830	+	0	NA	intron (NM_145804, intron 14 of 16)	intron (NM_145804, intron 14 of 16)	50121	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
185512	chr5	131325451	131325550	+	0	NA	intron (NM_001375633, intron 2 of 5)	intron (NM_001375633, intron 2 of 5)	61447	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
156202	chr22	40291971	40292130	+	0	NA	intron (NM_015088, intron 10 of 20)	AluSx1|SINE|Alu	-54450	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
200964	chr6	139249951	139250050	+	0	NA	intron (NM_153235, intron 7 of 9)	intron (NM_153235, intron 7 of 9)	41998	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
40688	chr11	64770721	64771100	+	0	NA	intron (NM_001346410, intron 2 of 11)	intron (NM_001346410, intron 2 of 11)	6851	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
150345	chr21	42146621	42146900	+	0	NA	Intergenic	Intergenic	-38226	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
3835	chr1	16903621	16904400	+	0	NA	Intergenic	Intergenic	8030	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
120089	chr19	42125651	42125950	+	0	NA	intron (NM_001247994, intron 1 of 13)	intron (NM_001247994, intron 1 of 13)	6646	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
21009	chr1	202852301	202852580	+	0	NA	Intergenic	Intergenic	-9314	NR_002929	148709		NR_002929	ENSG00000293264	ACTG1P25	AGPG	actin gamma 1 pseudogene 25	pseudo
217984	chr8	38374701	38374980	+	0	NA	intron (NM_017778, intron 1 of 9)	AluY|SINE|Alu	7431	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
25001	chr10	3192751	3193330	+	0	NA	Intergenic	Intergenic	-20199	NM_001242307	10531		NM_014889	ENSG00000107959	PITRM1	MP1|PreP|SCAR30	pitrilysin metallopeptidase 1	protein-coding
88368	chr16	84591851	84592350	+	0	NA	intron (NM_021149, intron 2 of 3)	MER20|DNA|hAT-Charlie	25978	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
168510	chr3	143832171	143832530	+	0	NA	intron (NM_173653, intron 1 of 15)	intron (NM_173653, intron 1 of 15)	16118	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
133134	chr2	112667121	112667380	+	0	NA	Intergenic	AluSz|SINE|Alu	21311	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
230551	chr9	128416671	128417250	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluSz|SINE|Alu	-2200	NM_001286760	51148		NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
23553	chr1	229324101	229324500	+	0	NA	3' UTR (NM_145257, exon 4 of 4)	3' UTR (NM_145257, exon 4 of 4)	18747	NM_145257	126731		NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
191491	chr6	11222251	11223280	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	9903	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
130262	chr2	84861551	84861850	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	19384	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
35793	chr11	2189351	2189650	+	0	NA	Intergenic	AluY|SINE|Alu	16437	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
140871	chr2	237486821	237487080	+	0	NA	promoter-TSS (NM_001281473)	promoter-TSS (NM_001281473)	-301	NM_024101	79083		NM_024101	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding
161669	chr3	43344771	43345200	+	0	NA	intron (NM_017719, intron 6 of 6)	intron (NM_017719, intron 6 of 6)	6977	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
52921	chr12	57238911	57239690	+	0	NA	intron (NM_020142, intron 1 of 4)	CpG	1392	NM_020142	56901		NM_020142	ENSG00000185633	NDUFA4L2	COXFA4L2|MISTRH|NUOMS	NDUFA4 mitochondrial complex associated like 2	protein-coding
117528	chr19	20424101	20425180	+	0	NA	intron (NR_036455, intron 1 of 2)	intron (NR_036455, intron 1 of 2)	325	NR_036455	664701		NM_001039884		ZNF826P	ZNF826	zinc finger protein 826, pseudogene	pseudo
199038	chr6	111441901	111442100	+	0	NA	intron (NM_001372078, intron 1 of 31)	L1MCa|LINE|L1	41218	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
51432	chr12	52027451	52028730	+	0	NA	intron (NM_001202233, intron 1 of 7)	AluJb|SINE|Alu	5258	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
227681	chr9	92996871	92997230	+	0	NA	intron (NM_001369951, intron 3 of 17)	L1PA5|LINE|L1	17894	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
82279	chr16	15389851	15390700	+	0	NA	Intergenic	Intergenic	-1364	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
12224	chr1	100408371	100409150	+	0	NA	intron (NM_001319210, intron 4 of 16)	L1PREC2|LINE|L1	56254	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
220982	chr8	115429071	115429650	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	238653	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
94412	chr17	29019001	29019200	+	0	NA	Intergenic	Intergenic	-12660	NM_001290202	124925		NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
57399	chr12	121825251	121825900	+	0	NA	intron (NM_001353345, intron 13 of 16)	intron (NM_001353345, intron 13 of 16)	21566	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
191517	chr6	11344251	11344550	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	37948	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
176920	chr4	102814201	102815050	+	0	NA	intron (NM_181893, intron 1 of 6)	intron (NM_181893, intron 1 of 6)	11235	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
88677	chr16	85690501	85691280	+	0	NA	Intergenic	MIRc|SINE|MIR	-1936	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
96736	chr17	41681721	41682380	+	0	NA	Intergenic	Intergenic	-6835	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
220213	chr8	96180051	96180380	+	0	NA	Intergenic	Intergenic	-19409	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
74321	chr15	58424351	58424450	+	0	NA	Intergenic	Intergenic	-7591	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
192052	chr6	16513821	16514650	+	0	NA	intron (NM_000332, intron 6 of 8)	intron (NM_000332, intron 6 of 8)	245949	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
198587	chr6	107659001	107659200	+	0	NA	3' UTR (NM_018013, exon 7 of 7)	3' UTR (NM_018013, exon 7 of 7)	73050	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
178369	chr4	146449301	146449750	+	0	NA	intron (NR_133924, intron 4 of 9)	intron (NR_133924, intron 4 of 9)	40942	NR_107003	102465837		NR_107003	ENSG00000278438	MIR7849	hsa-mir-7849	microRNA 7849	ncRNA
15959	chr1	151846501	151847230	+	0	NA	TTS (NM_182578)	TTS (NM_182578)	-6308	NM_001136003	100191040		NM_001136003	ENSG00000225556	C2CD4D	FAM148D	C2 calcium dependent domain containing 4D	protein-coding
158175	chr22	50218551	50220200	+	0	NA	exon (NM_020461, exon 19 of 25)	exon (NM_020461, exon 19 of 25)	18364	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
11951	chr1	93876521	93876980	+	0	NA	exon (NM_014597, exon 2 of 7)	exon (NM_014597, exon 2 of 7)	2456	NM_014597	30836		NM_014597	ENSG00000067334	DNTTIP2	ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2	deoxynucleotidyltransferase terminal interacting protein 2	protein-coding
109871	chr19	1241201	1242630	+	0	NA	exon (NM_001687, exon 1 of 4)	exon (NM_001687, exon 1 of 4)	164	NM_001687	513		NM_001687	ENSG00000099624	ATP5F1D	ATP5D|MC5DN5	ATP synthase F1 subunit delta	protein-coding
163648	chr3	52153801	52156000	+	0	NA	promoter-TSS (NM_001161581)	promoter-TSS (NM_001161581)	-477	NM_001161581	25886		NM_015426	ENSG00000164087	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
56918	chr12	120430071	120431000	+	0	NA	Intergenic	Intergenic	-7578	NM_004373	1337		NM_004373	ENSG00000111775	COX6A1	CMTRID|COX6A|COX6AL	cytochrome c oxidase subunit 6A1	protein-coding
237502	chrX	119989871	119990400	+	0	NA	Intergenic	Intergenic	25416	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
146082	chr20	47540471	47540630	+	0	NA	intron (NM_181659, intron 1 of 22)	AluSq2|SINE|Alu	38663	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
77651	chr15	85501521	85501780	+	0	NA	intron (NM_007200, intron 2 of 36)	MIRb|SINE|MIR	-118300	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
168767	chr3	151270221	151270480	+	0	NA	intron (NM_014879, intron 1 of 2)	intron (NM_014879, intron 1 of 2)	8192	NM_014879	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
129118	chr2	65229651	65229980	+	0	NA	intron (NM_005722, intron 1 of 8)	intron (NM_005722, intron 1 of 8)	1984	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
177111	chr4	108089871	108090030	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	76847	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
18979	chr1	169105671	169107430	+	0	NA	promoter-TSS (NM_001677)	promoter-TSS (NM_001677)	-140	NM_001677	481		NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
88924	chr16	87824171	87824530	+	0	NA	Intergenic	Intergenic	10310	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
203786	chr7	1241551	1242080	+	0	NA	Intergenic	CpG-25321	8943	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
205075	chr7	6636651	6638500	+	0	NA	intron (NM_001278559, intron 1 of 8)	CpG	257	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
187376	chr5	141857401	141858000	+	0	NA	intron (NM_032420, intron 3 of 4)	intron (NM_032420, intron 3 of 4)	8502	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
204473	chr7	4726651	4726950	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	44505	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
198806	chr6	109014801	109015350	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	-5520	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
73845	chr15	49620321	49621750	+	0	NA	promoter-TSS (NM_001330293)	promoter-TSS (NM_001330293)	-13	NM_001144955	56986		NM_020234	ENSG00000104047	DTWD1	MDS009	DTW domain containing 1	protein-coding
10930	chr1	84145201	84145600	+	0	NA	intron (NM_182948, intron 1 of 9)	intron (NM_182948, intron 1 of 9)	1129	NM_001300916	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
54447	chr12	91852051	91852750	+	0	NA	Intergenic	L1MB8|LINE|L1	289313	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
9701	chr1	53089901	53090100	+	0	NA	intron (NM_001287595, intron 8 of 10)	G-rich|Low_complexity|Low_complexity	27787	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
48863	chr12	12434071	12434230	+	0	NA	intron (NM_058169, intron 2 of 3)	AluJo|SINE|Alu	77072	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
19417	chr1	174180321	174180780	+	0	NA	intron (NM_001366447, intron 1 of 20)	AluJo|SINE|Alu	21030	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
61270	chr13	50084951	50085630	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	3121	NR_109974	10301		NM_005887	ENSG00000176124	DLEU1	BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6	deleted in lymphocytic leukemia 1	ncRNA
85657	chr16	56201701	56202400	+	0	NA	intron (NM_020988, intron 2 of 8)	intron (NM_020988, intron 2 of 8)	-7525	NR_026889	26077		NR_026889	ENSG00000261439	GNAO1-AS1	DKFZP434H168	GNAO1 antisense RNA 1	ncRNA
144846	chr20	36886921	36887900	+	0	NA	intron (NM_080628, intron 4 of 6)	intron (NM_080628, intron 4 of 6)	11272	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
213442	chr7	138656621	138656700	+	0	NA	intron (NM_174959, intron 2 of 11)	intron (NM_174959, intron 2 of 11)	7564	NM_001331192	136306		NM_174959	ENSG00000157703	SVOPL	SLC22B5	SVOP like	protein-coding
1999	chr1	6735421	6735950	+	0	NA	Intergenic	AluY|SINE|Alu	8158	NR_104621	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
178063	chr4	140052101	140052500	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-75715	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
239346	chrY	19431971	19432330	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	71003	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
169288	chr3	158169001	158169200	+	0	NA	intron (NM_001271834, intron 3 of 8)	MER72|LTR|ERV1	59011	NM_001271838	51319		NM_016625	ENSG00000174891	RSRC1	BM-011|MRT70|SFRS21|SRrp53	arginine and serine rich coiled-coil 1	protein-coding
120383	chr19	43662671	43663030	+	0	NA	intron (NM_002659, intron 3 of 6)	AluJr|SINE|Alu	7319	NM_001005377	5329		NM_002659	ENSG00000011422	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
12712	chr1	109501501	109503080	+	0	NA	Intergenic	Intergenic	7437	NM_020703	57463		NM_020703	ENSG00000181754	AMIGO1	ALI2|AMIGO|AMIGO-1	adhesion molecule with Ig like domain 1	protein-coding
165191	chr3	72455351	72455930	+	0	NA	Intergenic	L2a|LINE|L2	-9017	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
124814	chr2	7592701	7593330	+	0	NA	Intergenic	Intergenic	171754	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
122085	chr19	48736021	48736780	+	0	NA	intron (NM_017805, intron 3 of 11)	AluY|SINE|Alu	4210	NM_017805	54922		NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
163960	chr3	52959801	52960050	+	0	NA	intron (NM_016329, intron 2 of 20)	L2a|LINE|L2	-62377	NM_001198974	100526772		NM_001198974	ENSG00000248592	STIMATE-MUSTN1	TMEM110-MUSTN1	STIMATE-MUSTN1 readthrough	protein-coding
152349	chr22	20435721	20437000	+	0	NA	intron (NM_182895, intron 1 of 10)	CpG	1465	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
14030	chr1	120741351	120742000	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	17736	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
21663	chr1	206693471	206694130	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	8895	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
36159	chr11	3147471	3147630	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	17760	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
154529	chr22	36144121	36144380	+	0	NA	intron (NM_145640, intron 2 of 2)	intron (NM_145640, intron 2 of 2)	16505	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
7257	chr1	32357451	32357550	+	0	NA	Intergenic	MIRb|SINE|MIR	4743	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
199974	chr6	127979051	127979150	+	0	NA	intron (NM_001291981, intron 28 of 32).2	AluJr|SINE|Alu	-48765	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
106170	chr18	9968401	9969200	+	0	NA	Intergenic	L2a|LINE|L2	54784	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
133616	chr2	126657701	126658480	+	0	NA	intron (NM_016815, intron 1 of 2)	intron (NM_016815, intron 1 of 2)	1932	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
145054	chr20	38430901	38431300	+	0	NA	non-coding (NR_027241, exon 3 of 7)	non-coding (NR_027241, exon 3 of 7)	-1296	NR_003017	677839		NR_003017	ENSG00000201512	SNORA71C	U71c	small nucleolar RNA, H/ACA box 71C	snoRNA
3537	chr1	16082151	16083000	+	0	NA	Intergenic	L2b|LINE|L2	-8924	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
60120	chr13	38872671	38872930	+	0	NA	exon (NM_207361, exon 17 of 24)	exon (NM_207361, exon 17 of 24)	-45209	NR_146963	100874073		NR_146963		FREM2-AS1	-	FREM2 antisense RNA 1	ncRNA
206676	chr7	36387351	36387950	+	0	NA	intron (NM_001100425, intron 1 of 6)	intron (NM_001100425, intron 1 of 6)	-2212	NM_001284301	54443		NM_018685	ENSG00000011426	ANLN	FSGS8|Scraps|scra	anillin, actin binding protein	protein-coding
233110	chr9	137128201	137128650	+	0	NA	Intergenic	Intergenic	-10729	NM_007327	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
79908	chr16	1651171	1652180	+	0	NA	intron (NM_020825, intron 6 of 20)	intron (NM_020825, intron 6 of 20)	-26604	NM_144570	90861		NM_144570	ENSG00000206053	JPT2	C16orf34|HN1L|L11	Jupiter microtubule associated homolog 2	protein-coding
45018	chr11	117016371	117016730	+	0	NA	intron (NM_001281748, intron 1 of 24)	FLAM_A|SINE|Alu	81878	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
89533	chr16	89189701	89190600	+	0	NA	intron (NM_004933, intron 7 of 13)	intron (NM_004933, intron 7 of 13)	10387	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
115792	chr19	16373221	16373500	+	0	NA	intron (NR_047665, intron 21 of 22)	intron (NR_047665, intron 21 of 22)	48534	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
155712	chr22	39114971	39115130	+	0	NA	Intergenic	LTR49|LTR|ERV1	17806	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
81707	chr16	11249071	11249230	+	0	NA	Intergenic	Intergenic	7032	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
170834	chr3	190201601	190201950	+	0	NA	Intergenic	AluY|SINE|Alu	-79338	NM_001134418	55214		NM_018192	ENSG00000090530	P3H2	LEPREL1|MCVD|MLAT4	prolyl 3-hydroxylase 2	protein-coding
230476	chr9	128218201	128219350	+	0	NA	intron (NM_001374269, intron 3 of 21)	CpG	-14553	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
93303	chr17	18158001	18159500	+	0	NA	intron (NM_016239, intron 51 of 64)	intron (NM_016239, intron 51 of 64)	-25078	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
59511	chr13	26985101	26985600	+	0	NA	Intergenic	Intergenic	-140183	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
18060	chr1	160634851	160634950	+	0	NA	intron (NR_104400, intron 2 of 4)	intron (NR_104400, intron 2 of 4)	12144	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
14541	chr1	144874901	144875430	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	156994	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
121488	chr19	47129371	47129630	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1335	NM_001145713	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
166436	chr3	113839901	113840300	+	0	NA	intron (NM_017577, intron 1 of 17)	AluYm1|SINE|Alu	1312	NM_017577	54762		NM_017577	ENSG00000178075	GRAMD1C	-	GRAM domain containing 1C	protein-coding
35244	chr11	846771	847380	+	0	NA	intron (NM_001025237, intron 1 of 8)	intron (NM_001025237, intron 1 of 8)	2629	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
5489	chr1	25692551	25692850	+	0	NA	intron (NM_001385184, intron 2 of 6)	intron (NM_001385184, intron 2 of 6)	-3455	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
128685	chr2	61519071	61519230	+	0	NA	intron (NM_003400, intron 4 of 24)	AluSg|SINE|Alu	19206	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
50252	chr12	46253051	46254400	+	0	NA	intron (NM_001077484, intron 1 of 16)	MER41A|LTR|ERV1	12791	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
11576	chr1	91533501	91534200	+	0	NA	Intergenic	Intergenic	32742	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
91855	chr17	7223401	7223600	+	0	NA	promoter-TSS (NR_029896)	promoter-TSS (NR_029896)	-121	NR_029896	442898		NR_029896	ENSG00000199053	MIR324	MIRN324|hsa-mir-324|mir-324	microRNA 324	ncRNA
73915	chr15	50774401	50774830	+	0	NA	Intergenic	Intergenic	-8909	NM_032802	84888		NM_032802	ENSG00000138600	SPPL2A	IMD86|IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
12172	chr1	100357021	100357680	+	0	NA	intron (NM_001319210, intron 2 of 16)	intron (NM_001319210, intron 2 of 16)	4844	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
50434	chr12	47633921	47635380	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	71380	NM_024604	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
164734	chr3	69011871	69012330	+	0	NA	intron (NM_173654, intron 2 of 14)	intron (NM_173654, intron 2 of 14)	1584	NR_103826	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
185931	chr5	132915221	132915480	+	0	NA	intron (NM_014423, intron 5 of 20)	AluY|SINE|Alu	41682	NM_052971	116842		NM_052971	ENSG00000164406	LEAP2	LEAP-2	liver enriched antimicrobial peptide 2	protein-coding
180858	chr5	32598151	32599000	+	0	NA	intron (NM_006713, intron 3 of 4)	Tigger2b_Pri|DNA|TcMar-Tigger	13018	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
172764	chr4	2905851	2906680	+	0	NA	intron (NM_176801, intron 10 of 15)	intron (NM_176801, intron 10 of 15)	27972	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
18095	chr1	160691051	160691150	+	0	NA	intron (NM_001256030, intron 1 of 2)	LTR5|LTR|ERVK	20722	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
112851	chr19	7544601	7544950	+	0	NA	intron (NM_006702, intron 16 of 34)	intron (NM_006702, intron 16 of 34)	9058	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
122804	chr19	50374321	50374580	+	0	NA	Intergenic	Intergenic	-2007	NM_001256647	7376		NM_007121	ENSG00000131408	NR1H2	LXR-b|LXRB|NER|NER-I|RIP15|UNR	nuclear receptor subfamily 1 group H member 2	protein-coding
107548	chr18	48778001	48778200	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	107500	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
5258	chr1	25028571	25029900	+	0	NA	Intergenic	MIRb|SINE|MIR	5732	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
163254	chr3	50287721	50287980	+	0	NA	3' UTR (NM_001304385, exon 4 of 4)	3' UTR (NM_001304385, exon 4 of 4)	4579	NM_006764	7866		NM_006764	ENSG00000214706	IFRD2	IFNRP|SKMc15|SM15	interferon related developmental regulator 2	protein-coding
128418	chr2	55267971	55268130	+	0	NA	intron (NM_001321004, intron 1 of 14)	AluSx1|SINE|Alu	1129	NM_001005369	4528		NM_002453	ENSG00000085760	MTIF2	-	mitochondrial translational initiation factor 2	protein-coding
121615	chr19	47423821	47424330	+	0	NA	Intergenic	Intergenic	-1842	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
196708	chr6	44935651	44936600	+	0	NA	intron (NM_001350327, intron 8 of 9)	intron (NM_001350327, intron 8 of 9)	261645	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
99483	chr17	50183421	50184750	+	0	NA	TTS (NM_000088)	TTS (NM_000088)	-11609	NR_024192	373861		NM_194072		H1-9P	H1-9|H1.9|HILS1	H1.9 linker histone, pseudogene	pseudo
44833	chr11	114065901	114066900	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	3189	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
171711	chr3	197878401	197878630	+	0	NA	intron (NM_001365715, intron 20 of 20)	intron (NM_001365715, intron 20 of 20)	71410	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
61471	chr13	52324671	52325150	+	0	NA	Intergenic	L1MA4A|LINE|L1	-9385	NR_120400	103191607		NR_120400	ENSG00000271564	LINC02333	-	long intergenic non-protein coding RNA 2333	ncRNA
65479	chr14	51863521	51864080	+	0	NA	intron (NM_001243774, intron 1 of 2)	L1MB3|LINE|L1	3188	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
64446	chr14	24229251	24229550	+	0	NA	intron (NR_137631, intron 1 of 6)	AluSg|SINE|Alu	2967	NM_006156	4738		NM_006156	ENSG00000129559	NEDD8	NEDD-8	NEDD8 ubiquitin like modifier	protein-coding
189762	chr5	176633651	176634180	+	0	NA	intron (NM_001375362, intron 1 of 8)	L2c|LINE|L2	3240	NM_001375362	253314		NM_001099408	ENSG00000175766	EIF4E1B	-	eukaryotic translation initiation factor 4E family member 1B	protein-coding
112965	chr19	7851671	7851830	+	0	NA	exon (NM_001159944, exon 8 of 20)	exon (NM_001159944, exon 8 of 20)	21532	NM_145245	115704		NM_145245	ENSG00000142459	EVI5L	-	ecotropic viral integration site 5 like	protein-coding
166897	chr3	124671121	124671530	+	0	NA	intron (NM_001322999, intron 13 of 14)	intron (NM_001322999, intron 13 of 14)	-59041	NR_033437	7372		NM_000373	ENSG00000114491	UMPS	OPRT	uridine monophosphate synthetase	protein-coding
48203	chr12	8079771	8080650	+	0	NA	Intergenic	L2c|LINE|L2	-2001	NR_024260	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
45226	chr11	117945171	117945730	+	0	NA	Intergenic	Intergenic	-15997	NM_001206790	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
144024	chr20	33487751	33488330	+	0	NA	Intergenic	AluSx|SINE|Alu	-2056	NM_001032999	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
139843	chr2	230447101	230447300	+	0	NA	intron (NM_001080391, intron 5 of 28)	intron (NM_001080391, intron 5 of 28)	30444	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
220886	chr8	104329921	104330200	+	0	NA	Intergenic	CpG	-9736	NM_001257317	81501		NM_030788	ENSG00000164935	DCSTAMP	FIND|TM7SF4|hDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding
172663	chr4	2713651	2714750	+	0	NA	intron (NM_001256666, intron 18 of 19)	intron (NM_001256666, intron 18 of 19)	42136	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
155559	chr22	38725901	38726650	+	0	NA	exon (NM_004286, exon 8 of 12)	exon (NM_004286, exon 8 of 12)	20331	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
13197	chr1	112627451	112628080	+	0	NA	intron (NM_006135, intron 1 of 9)	AluSp|SINE|Alu	7933	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
178781	chr4	153468651	153469730	+	0	NA	intron (NM_015196, intron 2 of 34)	intron (NM_015196, intron 2 of 34)	2830	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
164633	chr3	66439801	66440150	+	0	NA	intron (NM_001377344, intron 2 of 17)	intron (NM_001377344, intron 2 of 17)	-33817	NM_001377347	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
188544	chr5	156753771	156753930	+	0	NA	intron (NM_000337, intron 7 of 8)	THE1C|LTR|ERVL-MaLR	-96445	NM_206858	153743		NM_206858	ENSG00000231989	PPP1R2B	PPP1R2P3	PPP1R2 family member B	protein-coding
147676	chr20	62305371	62306330	+	0	NA	intron (NM_175573, intron 3 of 9)	intron (NM_175573, intron 3 of 9)	2853	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
131878	chr2	98723521	98723780	+	0	NA	intron (NM_012214, intron 2 of 15)	intron (NM_012214, intron 2 of 15)	7482	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
702	chr1	1406701	1407980	+	0	NA	promoter-TSS (NM_017971)	promoter-TSS (NM_017971)	-47	NM_001318485	55052		NM_017971	ENSG00000242485	MRPL20	L20mt|MRP-L20|bL20m	mitochondrial ribosomal protein L20	protein-coding
9338	chr1	46615821	46617480	+	0	NA	intron (NM_201403, intron 1 of 3)	CpG	241	NM_201403	148932		NM_145279	ENSG00000142961	MOB3C	MOB1E|MOBKL2C	MOB kinase activator 3C	protein-coding
191203	chr6	5486271	5486430	+	0	NA	intron (NM_001374875, intron 4 of 6)	intron (NM_001374875, intron 4 of 6)	-28275	NR_125848	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
42067	chr11	67485901	67487250	+	0	NA	intron (NM_001302959, intron 1 of 5)	L2a|LINE|L2	3059	NM_001302959	9049		NM_003977	ENSG00000110711	AIP	ARA9|FKBP16|FKBP37|PITA1|SMTPHN|XAP-2|XAP2	aryl hydrocarbon receptor interacting protein	protein-coding
159562	chr3	14884471	14884900	+	0	NA	intron (NM_152536, intron 4 of 19)	MLT1G3|LTR|ERVL-MaLR	62820	NR_046252	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
198652	chr6	107815901	107816700	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	8013	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
158744	chr3	9169951	9170250	+	0	NA	intron (NM_014850, intron 1 of 21)	MIRb|SINE|MIR	-22393	NR_121663	101927416		NR_121663	ENSG00000228723	SRGAP3-AS2	-	SRGAP3 antisense RNA 2	ncRNA
76501	chr15	74937201	74938730	+	0	NA	exon (NM_004255, exon 1 of 5)	exon (NM_004255, exon 1 of 5)	108	NM_004255	9377		NM_004255	ENSG00000178741	COX5A	COX|COX-VA|MC4DN20|VA	cytochrome c oxidase subunit 5A	protein-coding
156028	chr22	39956971	39957130	+	0	NA	intron (NM_004810, intron 3 of 7)	intron (NM_004810, intron 3 of 7)	10233	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
234441	chrX	16882301	16883530	+	0	NA	Intergenic	LTR105_Mam|LTR|ERVL	-12553	NM_002893	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
6375	chr1	27874651	27874750	+	0	NA	intron (NM_001039477, intron 1 of 3)	AluJb|SINE|Alu	2156	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
113137	chr19	8327371	8327530	+	0	NA	intron (NM_198471, intron 7 of 10)	AluSc|SINE|Alu	5954	NM_001031	6234		NM_001031	ENSG00000233927	RPS28	DBA15|S28|eS28	ribosomal protein S28	protein-coding
220507	chr8	100650751	100651050	+	0	NA	Intergenic	AluSp|SINE|Alu	-1235	NM_152628	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
185759	chr5	132260721	132260980	+	0	NA	intron (NM_001131027, intron 1 of 5)	intron (NM_001131027, intron 1 of 5)	3154	NM_003687	8572		NM_003687	ENSG00000131435	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
144942	chr20	37034551	37034850	+	0	NA	intron (NM_183404, intron 15 of 20)	AluSx3|SINE|Alu	61297	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
227064	chr9	84261101	84261380	+	0	NA	Intergenic	Intergenic	79518	NR_037638	64078		NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
237987	chrX	134463371	134463550	+	0	NA	intron (NM_000194, intron 1 of 8)	intron (NM_000194, intron 1 of 8)	3295	NM_000194	3251		NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
203422	chr7	268421	269230	+	0	NA	Intergenic	Intergenic	-21345	NM_001374838	116033993		NM_001374838	ENSG00000248767	FOXL3	-	forkhead box L3	protein-coding
107989	chr18	58669821	58670280	+	0	NA	TTS (NR_164150)	TTS (NR_164150)	-1415	NM_173844	10892		NM_006785	ENSG00000172175	MALT1	IMD12|MLT|MLT1|PCASP1	MALT1 paracaspase	protein-coding
51535	chr12	52327251	52328050	+	0	NA	Intergenic	Intergenic	-6252	NM_002282	3889		NM_002282	ENSG00000170523	KRT83	EKVP5|HB3|Hb-3|KRTHB3|MNLIX	keratin 83	protein-coding
110969	chr19	2952121	2952380	+	0	NA	Intergenic	AluSp|SINE|Alu	-7279	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
195218	chr6	36133101	36133300	+	0	NA	intron (NM_002754, intron 3 of 11)	intron (NM_002754, intron 3 of 11)	2687	NM_002754	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
213705	chr7	140226571	140226730	+	0	NA	Intergenic	Intergenic	49389	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
34310	chr10	132065501	132065900	+	0	NA	promoter-TSS (NM_001323086)	promoter-TSS (NM_001323086)	-246	NM_001323086	282973		NM_194303	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
37846	chr11	33698801	33699050	+	0	NA	intron (NM_001166692, intron 1 of 1)	AluSz|SINE|Alu	1815	NM_001166692	100131378		NM_001166692	ENSG00000205177	C11orf91	-	chromosome 11 open reading frame 91	protein-coding
198902	chr6	109645551	109645650	+	0	NA	intron (NM_001145128, intron 8 of 40)	L1PA4|LINE|L1	45612	NR_138057	221264		NM_145025	ENSG00000155085	AK9	AK 9|AKD1|AKD2|C6orf199|C6orf224|SPGF89|dJ70A9.1	adenylate kinase 9	protein-coding
68459	chr14	85932621	85933200	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-1768	NR_110155	101928767		NR_110155	ENSG00000258733	LINC02328	-	long intergenic non-protein coding RNA 2328	ncRNA
132182	chr2	101820621	101821130	+	0	NA	intron (NM_001384572, intron 2 of 29)	intron (NM_001384572, intron 2 of 29)	122610	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
52503	chr12	56039151	56039480	+	0	NA	TTS (NM_001351090)	TTS (NM_001351090)	-2603	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
127267	chr2	38711351	38712630	+	0	NA	intron (NM_138801, intron 4 of 6)	MIRb|SINE|MIR	39371	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
13029	chr1	111215691	111216550	+	0	NA	Intergenic	Intergenic	-11539	NM_001025197	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
9940	chr1	54498971	54500080	+	0	NA	Intergenic	CpG	-48703	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
197160	chr6	59571951	59572330	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1610694	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
77709	chr15	85690591	85691000	+	0	NA	intron (NM_007200, intron 16 of 36)	MIR|SINE|MIR	67930	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
83074	chr16	22369251	22370030	+	0	NA	intron (NM_001802, intron 1 of 4)	intron (NM_001802, intron 1 of 4)	4979	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
39681	chr11	61702671	61703500	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	22694	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
158643	chr3	4994351	4994850	+	0	NA	Intergenic	Intergenic	-14639	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
84338	chr16	30190721	30191350	+	0	NA	Intergenic	Intergenic	2351	NR_002454	606724		NR_002454		LOC606724	-	coronin 1A pseudogene	pseudo
94515	chr17	29445471	29446030	+	0	NA	intron (NM_025142, intron 1 of 17)	L1MD|LINE|L1	54825	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
17007	chr1	156015851	156015950	+	0	NA	intron (NM_003145, intron 3 of 5)	AluSq2|SINE|Alu	5051	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
72143	chr15	29039701	29040500	+	0	NA	intron (NM_001353793, intron 2 of 12).2	intron (NM_001353793, intron 2 of 12).2	-30558	NM_001353797	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
73727	chr15	45181121	45181380	+	0	NA	promoter-TSS (NM_001301171)	promoter-TSS (NM_001301171)	-43	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
56848	chr12	120253211	120253800	+	0	NA	intron (NM_001080855, intron 1 of 11)	MIRc|SINE|MIR	-3342	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
47824	chr12	6592971	6593130	+	0	NA	intron (NM_001273, intron 17 of 39)	intron (NM_001273, intron 17 of 39)	-11441	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
159475	chr3	14144151	14145000	+	0	NA	TTS (NM_001354727)	TTS (NM_001354727)	19523	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
4828	chr1	23619391	23621680	+	0	NA	Intergenic	Intergenic	-6799	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
207082	chr7	39968901	39969100	+	0	NA	intron (NM_003718, intron 1 of 13)	intron (NM_003718, intron 1 of 13)	18640	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
87963	chr16	80466321	80466630	+	0	NA	intron (NR_120307, intron 2 of 5)	intron (NR_120307, intron 2 of 5)	-74259	NM_001305017	83657		NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein light chain roadblock-type 2	protein-coding
210062	chr7	95772501	95772700	+	0	NA	promoter-TSS (NM_001278422)	promoter-TSS (NM_001278422)	94	NM_004411	1780		NM_004411	ENSG00000158560	DYNC1I1	DNCI1|DNCIC1	dynein cytoplasmic 1 intermediate chain 1	protein-coding
3261	chr1	15038251	15038350	+	0	NA	intron (NM_201628, intron 3 of 14)	intron (NM_201628, intron 3 of 14)	92381	NM_001017999	23254		NM_015209	ENSG00000189337	KAZN	C1orf196|KAZ	kazrin, periplakin interacting protein	protein-coding
200250	chr6	132365271	132365430	+	0	NA	intron (NM_015529, intron 4 of 11)	intron (NM_015529, intron 4 of 11)	36125	NM_015529	26002		NM_015529	ENSG00000079931	MOXD1	MOX|PRO5780|dJ248E1.1	monooxygenase DBH like 1	protein-coding
56141	chr12	111313771	111314330	+	0	NA	intron (NM_015267, intron 16 of 21)	intron (NM_015267, intron 16 of 21)	9908	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
162180	chr3	46994901	46995100	+	0	NA	intron (NM_001365116, intron 11 of 52)	intron (NM_001365116, intron 11 of 52)	7010	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
51114	chr12	50074821	50076050	+	0	NA	intron (NM_001256830, intron 1 of 9)	intron (NM_001256830, intron 1 of 9)	1850	NM_001256830	41		NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding
69672	chr14	98122551	98122880	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-144591	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
147649	chr20	62216921	62217330	+	0	NA	intron (NM_007232, intron 2 of 2)	intron (NM_007232, intron 2 of 2)	3153	NM_007232	11255		NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
71784	chr15	21691971	21692130	+	0	NA	Intergenic	L1PA13|LINE|L1	26257	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
194066	chr6	31866601	31866830	+	0	NA	intron (NM_001178045, intron 13 of 20).5	AluSq2|SINE|Alu	-3894	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
197019	chr6	53330221	53330680	+	0	NA	intron (NM_001242830, intron 1 of 6)	Tigger3b|DNA|TcMar-Tigger	7167	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
160703	chr3	32395401	32396030	+	0	NA	intron (NM_138410, intron 1 of 4)	L1MB8|LINE|L1	3862	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
180677	chr5	18765551	18765850	+	0	NA	Intergenic	Intergenic	958426	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
138759	chr2	215828501	215828750	+	0	NA	intron (NR_037195, intron 1 of 9)	intron (NR_037195, intron 1 of 9)	14911	NR_037195	646324		NR_037195	ENSG00000235770	LINC00607	-	long intergenic non-protein coding RNA 607	ncRNA
208757	chr7	73535151	73535530	+	0	NA	Intergenic	L1MB4|LINE|L1	-13047	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
218348	chr8	42926451	42927080	+	0	NA	intron (NM_032410, intron 3 of 21)	L1MD2|LINE|L1	29787	NM_032410	84376		NM_032410	ENSG00000168172	HOOK3	HK3	hook microtubule tethering protein 3	protein-coding
126941	chr2	33491601	33491880	+	0	NA	intron (NM_001349980, intron 2 of 18)	intron (NM_001349980, intron 2 of 18)	15091	NM_001349981	25780		NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
114855	chr19	13853221	13853930	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-8461	NR_146095	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
82601	chr16	18879221	18879480	+	0	NA	intron (NM_015092, intron 11 of 62)	AluJo|SINE|Alu	47058	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
16854	chr1	155718821	155719330	+	0	NA	intron (NM_001199850, intron 3 of 11)	intron (NM_001199850, intron 3 of 11)	-26693	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
38744	chr11	46938071	46938230	+	0	NA	intron (NM_001278222, intron 1 of 7)	AluSq|SINE|Alu	1389	NR_103472	79096		NM_024113	ENSG00000149179	CSTPP1	C11orf49	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	protein-coding
174803	chr4	48114221	48114750	+	0	NA	intron (NM_003328, intron 1 of 14)	intron (NM_003328, intron 1 of 14)	19765	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
124763	chr2	7014101	7014630	+	0	NA	intron (NM_001349184, intron 3 of 8)	intron (NM_001349184, intron 3 of 8)	63515	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
101002	chr17	64656901	64657830	+	0	NA	intron (NM_022739, intron 1 of 18)	Tigger15a|DNA|TcMar-Tigger	4942	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
104682	chr17	81506871	81507690	+	0	NA	Intergenic	AluSx|SINE|Alu	5519	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
149447	chr21	31580671	31581100	+	0	NA	Intergenic	Intergenic	21652	NM_001321023	150051		NM_001321023	ENSG00000237594	TIAM1-AS1	-	TIAM1 antisense RNA 1	ncRNA
116644	chr19	18319571	18319730	+	0	NA	intron (NM_012321, intron 1 of 4)	intron (NM_012321, intron 1 of 4)	3426	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
6327	chr1	27667021	27667400	+	0	NA	intron (NM_022872, intron 4 of 4)	AluJo|SINE|Alu	-4488	NR_151722	111216282		NR_151722	ENSG00000233975	LINC02574	HEAL	long intergenic non-protein coding RNA 2574	ncRNA
192117	chr6	16739301	16739700	+	0	NA	non-coding (NR_152114, exon 4 of 4)	non-coding (NR_152114, exon 4 of 4)	20684	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
177105	chr4	108084001	108084400	+	0	NA	intron (NM_016269, intron 4 of 11)	intron (NM_016269, intron 4 of 11)	79536	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
67196	chr14	68910471	68911000	+	0	NA	intron (NM_001130004, intron 4 of 21)	THE1B|LTR|ERVL-MaLR	68567	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
133866	chr2	128374151	128374450	+	0	NA	Intergenic	Intergenic	-55432	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
234712	chrX	20530351	20530680	+	0	NA	Intergenic	Intergenic	-263606	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
122210	chr19	48967051	48967150	+	0	NA	TTS (NM_000146)	TTS (NM_000146)	1791	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
201659	chr6	149492871	149493800	+	0	NA	Intergenic	Intergenic	-8321	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
131657	chr2	97656401	97657080	+	0	NA	3' UTR (NM_005735, exon 11 of 11)	3' UTR (NM_005735, exon 11 of 11)	7304	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
198535	chr6	106539971	106540130	+	0	NA	intron (NM_001371242, intron 9 of 21)	intron (NM_001371242, intron 9 of 21)	28195	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
40332	chr11	63917801	63918380	+	0	NA	promoter-TSS (NM_001363648)	promoter-TSS (NM_001363648)	-926	NM_173587	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
114961	chr19	14000521	14000780	+	0	NA	intron (NM_002918, intron 1 of 20)	AluJo|SINE|Alu	5670	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
30767	chr10	84331271	84331880	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	2986	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
235529	chrX	47226721	47227500	+	0	NA	intron (NM_033018, intron 12 of 15)	intron (NM_033018, intron 12 of 15)	4092	NM_001170460	5127		NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
160604	chr3	31288451	31288950	+	0	NA	Intergenic	Intergenic	-126913	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
45703	chr11	119078621	119079480	+	0	NA	intron (NR_165447, intron 13 of 15).2	intron (NR_165447, intron 13 of 15).2	-5827	NM_001258209	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
105527	chr17	83118721	83119380	+	0	NA	Intergenic	Intergenic	37904	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
44180	chr11	96248171	96248600	+	0	NA	intron (NM_032427, intron 1 of 4)	AluSx1|SINE|Alu	-93053	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
98665	chr17	47838551	47839050	+	0	NA	exon (NM_001145023, exon 5 of 7)	exon (NM_001145023, exon 5 of 7)	2473	NM_001145023	90507		NM_138355	ENSG00000141295	SCRN2	Ses2	secernin 2	protein-coding
48726	chr12	10706651	10706830	+	0	NA	intron (NM_001145426, intron 5 of 8)	AluY|SINE|Alu	16583	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
116743	chr19	18472401	18472680	+	0	NA	intron (NM_006532, intron 2 of 11)	MER1B|DNA|hAT-Charlie	-34407	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
210178	chr7	98617071	98617430	+	0	NA	promoter-TSS (NM_002523)	promoter-TSS (NM_002523)	-35	NM_002523	4885		NM_002523	ENSG00000106236	NPTX2	NARP|NP-II|NP2	neuronal pentraxin 2	protein-coding
18325	chr1	161183351	161183650	+	0	NA	TTS (NM_005099)	TTS (NM_005099)	-5532	NM_001199873	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
131907	chr2	98773771	98774850	+	0	NA	Intergenic	L2|LINE|L2	-2412	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
209041	chr7	74657101	74657900	+	0	NA	promoter-TSS (NM_001518)	promoter-TSS (NM_001518)	-165	NM_001280800	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
119540	chr19	40589821	40590850	+	0	NA	exon (NM_138392, exon 16 of 18)	exon (NM_138392, exon 16 of 18)	-2831	NM_003573	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
201909	chr6	151376401	151377750	+	0	NA	intron (NM_020861, intron 1 of 2)	L1MD1|LINE|L1	14484	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
124664	chr2	3218801	3219000	+	0	NA	intron (NM_001330531, intron 3 of 7)	intron (NM_001330531, intron 3 of 7)	-92874	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
226191	chr9	65224071	65224230	+	0	NA	Intergenic	Intergenic	61059	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
94134	chr17	28306951	28307130	+	0	NA	non-coding (NR_028334, exon 1 of 3)	non-coding (NR_028334, exon 1 of 3)	342	NR_028334	284085		NM_173624	ENSG00000293325	KRT18P55	-	keratin 18 pseudogene 55	pseudo
160954	chr3	36946701	36946900	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-1746	NM_001329998	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
117153	chr19	19322871	19323230	+	0	NA	intron (NM_015329, intron 1 of 18)	AluSx4|SINE|Alu	2221	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
98690	chr17	47884671	47885630	+	0	NA	Intergenic	Intergenic	10666	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
100447	chr17	61394821	61395630	+	0	NA	intron (NR_125750, intron 1 of 2)	intron (NR_125750, intron 1 of 2)	4381	NR_125749	103689912		NR_125749	ENSG00000267280	TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
230449	chr9	128169001	128169400	+	0	NA	exon (NM_001131018, exon 14 of 17)	exon (NM_001131018, exon 14 of 17)	8935	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
18473	chr1	161614051	161614600	+	0	NA	Intergenic	Intergenic	8266	NR_024151	3311		NR_024151	ENSG00000225217	HSPA7	HSP70B	heat shock protein family A (Hsp70) member 7 (pseudogene)	pseudo
171442	chr3	196285201	196285700	+	0	NA	intron (NM_005017, intron 1 of 9)	AluSx|SINE|Alu	2276	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
58604	chr12	132479601	132480350	+	0	NA	Intergenic	Intergenic	-10176	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
22057	chr1	211318601	211318800	+	0	NA	Intergenic	HAL1ME|LINE|L1	-7915	NM_004619	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
133898	chr2	130157121	130157650	+	0	NA	exon (NM_017751, exon 11 of 19)	exon (NM_017751, exon 11 of 19)	-12273	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
97788	chr17	44756701	44757680	+	0	NA	Intergenic	Intergenic	-1798	NM_001318933	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
85842	chr16	57012171	57012330	+	0	NA	intron (NR_169520, intron 1 of 47)	L1MB8|LINE|L1	22693	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
13399	chr1	113953671	113954380	+	0	NA	intron (NM_181358, intron 1 of 13)	AluJo|SINE|Alu	148	NM_181358	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
67358	chr14	69712021	69712300	+	0	NA	3' UTR (NM_014734, exon 6 of 6)	3' UTR (NM_014734, exon 6 of 6)	-54982	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
15453	chr1	150324701	150324900	+	0	NA	intron (NR_146768, intron 1 of 15)	AluSx|SINE|Alu	3267	NM_004698	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
31482	chr10	96584521	96584880	+	0	NA	intron (NM_020123, intron 1 of 14)	AluSz6|SINE|Alu	2312	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
203600	chr7	935551	935880	+	0	NA	intron (NM_001284308, intron 1 of 10)	intron (NM_001284308, intron 1 of 10)	-8499	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
105370	chr17	82668271	82668880	+	0	NA	promoter-TSS (NR_039751)	promoter-TSS (NR_039751)	-268	NR_039751	100616196		NR_039751	ENSG00000266107	MIR4525	-	microRNA 4525	ncRNA
222234	chr8	133120321	133120630	+	0	NA	intron (NM_003235, intron 45 of 47)	MLT1C|LTR|ERVL-MaLR	-17873	NM_001045557	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
89613	chr16	89303501	89304100	+	0	NA	intron (NR_045839, intron 5 of 9)	intron (NR_045839, intron 5 of 9)	7672	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
216629	chr8	22102871	22103180	+	0	NA	non-coding (NR_148727, exon 17 of 18)	non-coding (NR_148727, exon 17 of 18)	6394	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
103106	chr17	77354921	77355600	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	-18077	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
105845	chr18	3000371	3000730	+	0	NA	intron (NM_001375808, intron 1 of 19)	LTR86B1|LTR|ERVL	11397	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
69225	chr14	92748351	92749050	+	0	NA	promoter-TSS (NM_005606)	promoter-TSS (NM_005606)	-73	NM_001008530	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
161819	chr3	45591571	45591930	+	0	NA	Intergenic	MER52A|LTR|ERV1	-3001	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
139221	chr2	219291851	219292400	+	0	NA	intron (NM_001199763, intron 18 of 21)	intron (NM_001199763, intron 18 of 21)	2075	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
86980	chr16	68210251	68210430	+	0	NA	intron (NM_173165, intron 9 of 9)	AluJb|SINE|Alu	23159	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
138931	chr2	218229071	218230400	+	0	NA	intron (NM_152862, intron 4 of 10)	intron (NM_152862, intron 4 of 10)	12338	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
111248	chr19	3524001	3524350	+	0	NA	intron (NM_001136198, intron 1 of 12)	intron (NM_001136198, intron 1 of 12)	1219	NM_001136198	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
127139	chr2	37668321	37668880	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	3042	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
166391	chr3	113531621	113533300	+	0	NA	promoter-TSS (NR_136285)	promoter-TSS (NR_136285)	89	NM_001308350	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
78442	chr15	92817271	92817930	+	0	NA	Intergenic	L2c|LINE|L2	22116	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
168889	chr3	152314401	152315050	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	15711	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
236058	chrX	56365171	56365550	+	0	NA	Intergenic	L1PB1|LINE|L1	132202	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
203950	chr7	1552071	1552900	+	0	NA	intron (NM_001097620, intron 2 of 8)	L1MA8|LINE|L1	3720	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
64628	chr14	31029071	31029430	+	0	NA	intron (NM_001254728, intron 1 of 5)	L2|LINE|L2	2607	NM_001254728	11154		NM_007077	ENSG00000100478	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor related protein complex 4 subunit sigma 1	protein-coding
119273	chr19	39537801	39538400	+	0	NA	TTS (NM_153232)	TTS (NM_153232)	2061	NM_153232	163126		NM_153232	ENSG00000176396	EID2	CRI2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
232445	chr9	136116551	136116900	+	0	NA	exon (NM_001256526, exon 2 of 2)	exon (NM_001256526, exon 2 of 2)	-1067	NR_165242	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
50772	chr12	49031171	49031330	+	0	NA	exon (NM_003482, exon 40 of 55)	exon (NM_003482, exon 40 of 55)	-12474	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
194098	chr6	31932121	31932380	+	0	NA	intron (NM_000063, intron 3 of 17).6	SVA_D|Retroposon|SVA	4533	NM_001145903	717		NM_000063	ENSG00000166278	C2	ARMD14|CO2	complement C2	protein-coding
170007	chr3	180821951	180822050	+	0	NA	intron (NR_109986, intron 2 of 13)	intron (NR_109986, intron 2 of 13)	48178	NR_109986	101928882		NR_109986	ENSG00000285336	LOC101928882	-	uncharacterized LOC101928882	ncRNA
227408	chr9	89539971	89540330	+	0	NA	Intergenic	HAL1|LINE|L1	-42037	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
197313	chr6	72624251	72624800	+	0	NA	intron (NM_001160133, intron 1 of 14)	intron (NM_001160133, intron 1 of 14)	2461	NM_001160130	56479		NM_019842	ENSG00000185760	KCNQ5	Kv7.5|MRD46	potassium voltage-gated channel subfamily Q member 5	protein-coding
65600	chr14	52175571	52177200	+	0	NA	Intergenic	Intergenic	-91313	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
4578	chr1	22066921	22067180	+	0	NA	intron (NM_044472, intron 1 of 5)	L2b|LINE|L2	14341	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
222380	chr8	133684001	133684350	+	0	NA	promoter-TSS (NR_134462)	promoter-TSS (NR_134462)	-109	NR_134463	105375773		NR_134462	ENSG00000289906	LINC03024	-	long intergenic non-protein coding RNA 3024	ncRNA
130424	chr2	85349871	85350750	+	0	NA	intron (NM_017750, intron 3 of 10)	intron (NM_017750, intron 3 of 10)	4218	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
97123	chr17	42531251	42531450	+	0	NA	Intergenic	AluJo|SINE|Alu	-4891	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
112357	chr19	5960871	5961030	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	17190	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
46287	chr11	124867151	124867250	+	0	NA	intron (NM_022370, intron 1 of 27)	intron (NM_022370, intron 1 of 27)	1768	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
63006	chr13	112587221	112588980	+	0	NA	promoter-TSS (NM_001286279)	promoter-TSS (NM_001286279)	53	NM_006322	10426		NM_006322	ENSG00000126216	TUBGCP3	104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex component 3	protein-coding
36219	chr11	3564021	3564660	+	0	NA	intron (NR_126335, intron 1 of 2)	intron (NR_126335, intron 1 of 2)	7647	NR_126335	101927708		NR_126335	ENSG00000255367	LOC101927708	-	uncharacterized LOC101927708	ncRNA
113269	chr19	8517251	8518900	+	0	NA	Intergenic	AluJb|SINE|Alu	-3908	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
102748	chr17	76264251	76265700	+	0	NA	promoter-TSS (NM_182565)	promoter-TSS (NM_182565)	-373	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
76429	chr15	74793591	74794150	+	0	NA	intron (NM_001354988, intron 3 of 14)	intron (NM_001354988, intron 3 of 14)	-5113	NR_039738	100616183		NR_039738	ENSG00000264386	MIR4513	-	microRNA 4513	ncRNA
229890	chr9	126513771	126514830	+	0	NA	Intergenic	CpG	-99628	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
172286	chr4	1561401	1562000	+	0	NA	Intergenic	Intergenic	122291	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
135544	chr2	162342451	162342750	+	0	NA	intron (NM_001330266, intron 2 of 8)	LTR40a|LTR|ERVL	-1532	NM_012198	25801		NM_012198	ENSG00000115271	GCA	GCL	grancalcin	protein-coding
177564	chr4	119299001	119301280	+	0	NA	intron (NM_001170330, intron 2 of 2)	intron (NM_001170330, intron 2 of 2)	505	NM_001001701	401152		NM_001001701	ENSG00000164096	C4orf3	ALN|HCVFTP1	chromosome 4 open reading frame 3	protein-coding
193556	chr6	30620571	30620730	+	0	NA	intron (NM_014046, intron 4 of 6).5	AluSx3|SINE|Alu	2810	NM_014046	28973		NM_014046	ENSG00000204568	MRPS18B	C6orf14|HSPC183|HumanS18a|MRP-S18-2|MRPS18-2|PTD017|S18amt|mS40	mitochondrial ribosomal protein S18B	protein-coding
23314	chr1	228087171	228087330	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	4100	NM_001024227	375		NM_001658	ENSG00000143761	ARF1	PVNH8	ADP ribosylation factor 1	protein-coding
122037	chr19	48633501	48633700	+	0	NA	exon (NM_001352, exon 3 of 4)	exon (NM_001352, exon 3 of 4)	3779	NM_001352	1628		NM_001352	ENSG00000105516	DBP	DABP|taxREB302	D-box binding PAR bZIP transcription factor	protein-coding
99444	chr17	50132121	50133350	+	0	NA	Intergenic	L3|LINE|CR1	-2575	NM_174920	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
183270	chr5	76471301	76471750	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	68240	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
207633	chr7	45030051	45030350	+	0	NA	intron (NM_001029835, intron 1 of 9)	intron (NM_001029835, intron 1 of 9)	2566	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
131422	chr2	96286721	96286980	+	0	NA	exon (NM_014014, exon 28 of 45)	exon (NM_014014, exon 28 of 45)	18696	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
52222	chr12	54386901	54387200	+	0	NA	intron (NM_001130968, intron 1 of 6)	MIRb|SINE|MIR	-1271	NM_001290002	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
111139	chr19	3280071	3280230	+	0	NA	intron (NM_021938, intron 5 of 12)	intron (NM_021938, intron 5 of 12)	54872	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
9895	chr1	54372871	54373580	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	33169	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
55488	chr12	104735721	104736180	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	144317	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
153743	chr22	29314101	29314400	+	0	NA	intron (NM_006477, intron 1 of 2)	CpG-18923	1447	NM_006477	10633		NM_006477	ENSG00000100276	RASL10A	RRP22	RAS like family 10 member A	protein-coding
142672	chr20	6001101	6001300	+	0	NA	intron (NR_110101, intron 2 of 4)	MER1B|DNA|hAT-Charlie	4621	NR_110101	101929225		NR_110101	ENSG00000278719	MCM8-AS1	-	MCM8 antisense RNA 1	ncRNA
54763	chr12	94109201	94109400	+	0	NA	Intergenic	Intergenic	-39277	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
94840	chr17	31487541	31489100	+	0	NA	5' UTR (NM_001346748, exon 1 of 13)	5' UTR (NM_001346748, exon 1 of 13)	212	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
97316	chr17	43246501	43247030	+	0	NA	promoter-TSS (NR_002716).4	promoter-TSS (NR_002716).4	-901	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
139433	chr2	222971621	222971980	+	0	NA	Intergenic	Intergenic	-80390	NM_080671	23704		NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding
223111	chr8	143463721	143463980	+	0	NA	intron (NM_015117, intron 9 of 11)	intron (NM_015117, intron 9 of 11)	-33118	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
88711	chr16	85916421	85916730	+	0	NA	intron (NM_002163, intron 6 of 8)	intron (NM_002163, intron 6 of 8)	-1772	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
218861	chr8	60473351	60473450	+	0	NA	Intergenic	Intergenic	-43510	NM_001242644	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
12636	chr1	109201071	109201480	+	0	NA	intron (NM_020775, intron 21 of 21)	intron (NM_020775, intron 21 of 21)	-12618	NM_001330669	6301		NM_006513	ENSG00000031698	SARS1	NEDMAS|SARS|SERRS|SERS	seryl-tRNA synthetase 1	protein-coding
30949	chr10	87659551	87660450	+	0	NA	exon (NM_004670, exon 1 of 12)	exon (NM_004670, exon 1 of 12)	122	NM_001015880	9060		NM_004670	ENSG00000198682	PAPSS2	ATPSK2|BCYM4|SK2	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding
179241	chr4	174282171	174282330	+	0	NA	intron (NM_012180, intron 1 of 5)	intron (NM_012180, intron 1 of 5)	1417	NM_012180	26269		NM_012180	ENSG00000164117	FBXO8	DC10|FBS|FBX8	F-box protein 8	protein-coding
110806	chr19	2464471	2464830	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-2465	NR_134931	101928602		NR_134931	ENSG00000267201	LINC01775	-	long intergenic non-protein coding RNA 1775	ncRNA
127248	chr2	38691121	38691380	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	25136	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
33670	chr10	119869201	119869400	+	0	NA	intron (NM_001256379, intron 1 of 15)	AluSg|SINE|Alu	3543	NM_001256378	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
170444	chr3	185906171	185906730	+	0	NA	Intergenic	(TAT)n|Simple_repeat|Simple_repeat	31564	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
211408	chr7	105036271	105036930	+	0	NA	intron (NM_182931, intron 1 of 26)	MIR|SINE|MIR	22395	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
218605	chr8	56010571	56011000	+	0	NA	3' UTR (NM_001111097, exon 13 of 13)	3' UTR (NM_001111097, exon 13 of 13)	63116	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
219394	chr8	70576571	70576730	+	0	NA	intron (NM_001317804, intron 11 of 11)	AluSz6|SINE|Alu	31019	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
207734	chr7	48084871	48085930	+	0	NA	Intergenic	Intergenic	-3203	NM_001287426	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
56647	chr12	119545001	119545230	+	0	NA	Intergenic	MIRc|SINE|MIR	-48659	NM_001136534	387890		NM_001136534	ENSG00000224982	TMEM233	DSPB2|IFITMD2	transmembrane protein 233	protein-coding
69909	chr14	99507901	99509530	+	0	NA	3' UTR (NM_001144995, exon 6 of 6)	3' UTR (NM_001144995, exon 6 of 6)	27306	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
132205	chr2	102020621	102020920	+	0	NA	intron (NR_048564, intron 5 of 8)	intron (NR_048564, intron 5 of 8)	21809	NR_048564	7850		NM_004633	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor type 2	protein-coding
166846	chr3	123194571	123194830	+	0	NA	Intergenic	Intergenic	-7243	NM_012430	26984		NM_012430	ENSG00000121542	SEC22A	SEC22L2	SEC22 homolog A, vesicle trafficking protein	protein-coding
11252	chr1	88998551	88999580	+	0	NA	Intergenic	AluJo|SINE|Alu	-6105	NR_146184	56267		NM_001008661	ENSG00000137944	KYAT3	CCBL2|KAT3|KATIII	kynurenine aminotransferase 3	protein-coding
35283	chr11	961601	962180	+	0	NA	intron (NR_144509, intron 2 of 20)	intron (NR_144509, intron 2 of 20)	36020	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
50576	chr12	48286951	48287050	+	0	NA	Intergenic	AluJr|SINE|Alu	-41980	NM_181788	341567		NM_181788	ENSG00000187166	H1-7	H1.7|H1FNT|H1T2	H1.7 linker histone	protein-coding
27588	chr10	32381571	32381730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2881	NR_168506	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
180699	chr5	21493501	21493700	+	0	NA	intron (NR_027028, intron 4 of 5).2	intron (NR_027028, intron 4 of 5).2	34120	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
27312	chr10	30491921	30492480	+	0	NA	Intergenic	Intergenic	57554	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
215413	chr7	157586251	157586350	+	0	NA	intron (NM_130842, intron 16 of 21)	intron (NM_130842, intron 16 of 21)	-11878	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
11434	chr1	89775571	89776000	+	0	NA	Intergenic	L1MB4|LINE|L1	-45247	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
212884	chr7	130877351	130878250	+	0	NA	promoter-TSS (NR_029503)	promoter-TSS (NR_029503)	-261	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
82309	chr16	15656801	15657330	+	0	NA	intron (NM_017668, intron 1 of 8)	intron (NM_017668, intron 1 of 8)	6820	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
218955	chr8	61018821	61019080	+	0	NA	Intergenic	Intergenic	-51202	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
214015	chr7	143258721	143259400	+	0	NA	intron (NR_133932, intron 2 of 2)	MER57D|LTR|ERV1	-4369	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
194232	chr6	32414701	32414900	+	0	NA	Intergenic	AluSx|SINE|Alu	-7670	NM_001304561	56244		NM_019602	ENSG00000204290	BTNL2	BTL-II|BTN7|HSBLMHC1|SS2	butyrophilin like 2	protein-coding
175524	chr4	74400271	74400600	+	0	NA	Intergenic	LTR16B1|LTR|ERVL	35290	NM_001432	2069		NM_001432	ENSG00000124882	EREG	EPR|ER|Ep	epiregulin	protein-coding
35076	chr11	615101	616530	+	0	NA	TTS (NM_021924).2	TTS (NM_021924).2	135	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
49119	chr12	14792521	14792980	+	0	NA	intron (NM_016312, intron 8 of 11)	AluSq2|SINE|Alu	10728	NM_016312	51729		NM_016312	ENSG00000084463	WBP11	BUG13|CFAP90|FAP90|NPWBP|PPP1R165|SIPP1|VCTERL|VCTRL|WBP-11	WW domain binding protein 11	protein-coding
153644	chr22	28793671	28793830	+	0	NA	TTS (NM_001079539)	TTS (NM_001079539)	6822	NM_001079539	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
39187	chr11	57462851	57463200	+	0	NA	intron (NM_178570, intron 1 of 2)	intron (NM_178570, intron 1 of 2)	2497	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
193752	chr6	31285651	31285950	+	0	NA	Intergenic	Intergenic	-13664	NM_001243042	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
34049	chr10	124738851	124739380	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	5263	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
186333	chr5	134659371	134659780	+	0	NA	intron (NM_001252231, intron 1 of 12)	intron (NM_001252231, intron 1 of 12)	10790	NM_021982	10802		NM_021982	ENSG00000113615	SEC24A	-	SEC24 homolog A, COPII coat complex component	protein-coding
52675	chr12	56358451	56359080	+	0	NA	intron (NM_001385115, intron 1 of 23)	intron (NM_001385115, intron 1 of 23)	1342	NM_001385113	6773		NM_005419	ENSG00000170581	STAT2	IMD44|ISGF-3|P113|PTORCH3|STAT113	signal transducer and activator of transcription 2	protein-coding
46549	chr11	128480101	128480830	+	0	NA	intron (NM_001162422, intron 1 of 3)	GA-rich|Low_complexity|Low_complexity	41845	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
168253	chr3	141409121	141410250	+	0	NA	intron (NM_001376165, intron 3 of 4)	intron (NM_001376165, intron 3 of 4)	6671	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
195674	chr6	38167521	38167780	+	0	NA	TTS (NM_001099272)	TTS (NM_001099272)	-313946	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
126675	chr2	29314721	29315550	+	0	NA	intron (NM_004304, intron 8 of 28)	intron (NM_004304, intron 8 of 28)	-91235	NM_001353765	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
200207	chr6	131207371	131207830	+	0	NA	intron (NR_164834, intron 8 of 9)	AluJr|SINE|Alu	-42804	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
47978	chr12	6890821	6892030	+	0	NA	Intergenic	CpG	-2067	NR_135083	105369632		NR_135083	ENSG00000111671	LOC105369632	-	uncharacterized LOC105369632	ncRNA
61300	chr13	50236901	50237730	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	65297	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
130209	chr2	84649651	84650100	+	0	NA	intron (NM_001370, intron 33 of 76)	L1PA10|LINE|L1	133377	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
52714	chr12	56593871	56594780	+	0	NA	3' UTR (NM_002898, exon 14 of 14)	3' UTR (NM_002898, exon 14 of 14)	36001	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
72184	chr15	29270401	29271380	+	0	NA	intron (NM_015307, intron 2 of 10)	intron (NM_015307, intron 2 of 10)	-1068	NM_138704	56160		NM_138704	ENSG00000185115	NSMCE3	HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3	NSE3 homolog, SMC5-SMC6 complex component	protein-coding
140480	chr2	233184701	233185200	+	0	NA	intron (NM_001017915, intron 20 of 26).2	intron (NM_001017915, intron 20 of 26).2	-66621	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
159330	chr3	13047471	13048030	+	0	NA	intron (NM_001376938, intron 2 of 15)	MIRb|SINE|MIR	25679	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
38056	chr11	35173271	35174190	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	10780	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
173681	chr4	15231421	15231830	+	0	NA	intron (NR_125911, intron 2 of 5)	MADE1|DNA|TcMar-Mariner	-108363	NM_001135170	114905		NM_031911	ENSG00000163145	C1QTNF7	CTRP7|ZACRP7	C1q and TNF related 7	protein-coding
107710	chr18	49691101	49691530	+	0	NA	Intergenic	Intergenic	122218	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
161602	chr3	43179621	43180400	+	0	NA	Intergenic	MIRb|SINE|MIR	-73931	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
182695	chr5	68214851	68217030	+	0	NA	5' UTR (NM_181523, exon 1 of 16)	5' UTR (NM_181523, exon 1 of 16)	184	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
164082	chr3	55664201	55664600	+	0	NA	intron (NR_132749, intron 16 of 17)	intron (NR_132749, intron 16 of 17)	-4931	NR_024615	711		NM_001213	ENSG00000281708	ERC2-IT1	C1orf1|C3orf51|Po42	ERC2 intronic transcript 1	ncRNA
186039	chr5	134038371	134038530	+	0	NA	Intergenic	L2a|LINE|L2	-33475	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
96612	chr17	40552021	40552880	+	0	NA	Intergenic	Intergenic	7944	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
150481	chr21	42652871	42654830	+	0	NA	promoter-TSS (NM_001001575)	promoter-TSS (NM_001001575)	98	NM_001001580	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
149331	chr21	29050721	29050980	+	0	NA	intron (NM_006447, intron 16 of 17)	L2b|LINE|L2	22798	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
202086	chr6	154277051	154277780	+	0	NA	intron (NM_001130700, intron 2 of 11)	intron (NM_001130700, intron 2 of 11)	52666	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
156269	chr22	40420071	40420230	+	0	NA	intron (NM_001282661, intron 10 of 13)	intron (NM_001282661, intron 10 of 13)	43290	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
83246	chr16	23878721	23879530	+	0	NA	intron (NM_212535, intron 2 of 16)	AluSz|SINE|Alu	43142	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
33521	chr10	119212951	119213050	+	0	NA	intron (NM_005308, intron 1 of 15)	7SLRNA|srpRNA|srpRNA	5429	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
29809	chr10	72302851	72302950	+	0	NA	Intergenic	L1ME3A|LINE|L1	28976	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
122128	chr19	48835601	48836200	+	0	NA	intron (NM_016246, intron 1 of 8)	intron (NM_016246, intron 1 of 8)	591	NM_016246	51171		NM_016246	ENSG00000087076	HSD17B14	DHRS10|SDR47C1|retSDR3	hydroxysteroid 17-beta dehydrogenase 14	protein-coding
161952	chr3	46214521	46214880	+	0	NA	Intergenic	Intergenic	-6387	NM_001295	1230		NM_001295	ENSG00000163823	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	C-C motif chemokine receptor 1	protein-coding
149004	chr21	14522871	14523630	+	0	NA	intron (NM_001256370, intron 2 of 8)	intron (NM_001256370, intron 2 of 8)	23065	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
20397	chr1	198177251	198177780	+	0	NA	intron (NM_133494, intron 1 of 9)	L1M6|LINE|L1	20517	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
48522	chr12	10009851	10010180	+	0	NA	promoter-TSS (NR_135049)	promoter-TSS (NR_135049)	-612	NM_001129998	387837		NM_205852	ENSG00000256660	CLEC12B	UNQ5782	C-type lectin domain family 12 member B	protein-coding
234516	chrX	19544571	19544930	+	0	NA	intron (NM_001353892, intron 15 of 17)	intron (NM_001353892, intron 15 of 17)	-29489	NM_001001671	389840		NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
203878	chr7	1476601	1476950	+	0	NA	intron (NM_001080453, intron 36 of 47)	intron (NM_001080453, intron 36 of 47)	-17305	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
13691	chr1	116738711	116739950	+	0	NA	Intergenic	Intergenic	-15100	NM_001328609	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
107567	chr18	48820701	48821130	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	121892	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
237569	chrX	121047651	121048100	+	0	NA	exon (NM_012084, exon 1 of 1)	exon (NM_012084, exon 1 of 1)	265	NM_012084	2747		NM_012084	ENSG00000182890	GLUD2	GDH2|GLUDP1	glutamate dehydrogenase 2	protein-coding
183543	chr5	80104851	80105150	+	0	NA	Intergenic	Intergenic	-21335	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
136818	chr2	181953971	181954700	+	0	NA	promoter-TSS (NR_048567)	promoter-TSS (NR_048567)	94	NR_048567	151242		NM_001080545	ENSG00000150722	PPP1R1C	IPP5	protein phosphatase 1 regulatory inhibitor subunit 1C	protein-coding
9597	chr1	52148351	52148650	+	0	NA	intron (NM_004799, intron 1 of 18)	AluSq2|SINE|Alu	6406	NM_004799	9372		NM_004799	ENSG00000157077	ZFYVE9	MADHIP|NSP|PPP1R173|SARA|SMADIP	zinc finger FYVE-type containing 9	protein-coding
110587	chr19	2162471	2162900	+	0	NA	Intergenic	Intergenic	-1248	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
234831	chrX	24371421	24371900	+	0	NA	Intergenic	Intergenic	8977	NM_001136234	100130302		NM_001136234	ENSG00000223731	SUPT20HL1	FAM48B1|SPT20L	SUPT20H like 1	protein-coding
3520	chr1	16060951	16061250	+	0	NA	intron (NM_182623, intron 4 of 6)	intron (NM_182623, intron 4 of 6)	12338	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
109480	chr19	811771	811930	+	0	NA	TTS (NM_024888)	TTS (NM_024888)	-1734	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	mir-3187	microRNA 3187	ncRNA
159284	chr3	12971571	12971730	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-3920	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
195773	chr6	40475171	40475330	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	96913	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
47741	chr12	6518551	6518850	+	0	NA	intron (NM_014865, intron 13 of 31)	AluSx|SINE|Alu	8478	NR_004387	692148		NR_004387	ENSG00000239002	SCARNA10	MBI|U85|lnc	small Cajal body-specific RNA 10	ncRNA
235390	chrX	45069771	45070650	+	0	NA	exon (NM_001291417, exon 16 of 28)	exon (NM_001291417, exon 16 of 28)	130666	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
213936	chr7	142645801	142646000	+	0	NA	intron (NM_001363538, intron 10 of 11)	intron (NM_001363538, intron 10 of 11)	-20399	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
178302	chr4	145166521	145166780	+	0	NA	intron (NM_017493, intron 3 of 6)	AluSg|SINE|Alu	11508	NM_017493	54726		NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
1956	chr1	6579471	6581300	+	0	NA	TTS (NM_177540)	TTS (NM_177540)	391	NM_001278647	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
45135	chr11	117192051	117192900	+	0	NA	intron (NM_001040455, intron 20 of 25)	intron (NM_001040455, intron 20 of 25)	-6819	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
10535	chr1	66966501	66966900	+	0	NA	intron (NM_001077702, intron 9 of 15)	L1PA5|LINE|L1	36444	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
176771	chr4	102448571	102448730	+	0	NA	intron (NR_136202, intron 2 of 4)	AluJb|SINE|Alu	-52709	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
121153	chr19	46350571	46351750	+	0	NA	intron (NM_001204284, intron 1 of 11)	MIRb|SINE|MIR	4073	NM_001204284	5536		NM_006247	ENSG00000011485	PPP5C	PP5|PPP5|PPT	protein phosphatase 5 catalytic subunit	protein-coding
137186	chr2	191139901	191140100	+	0	NA	intron (NM_003151, intron 3 of 23)	L1PB2|LINE|L1	10994	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
125076	chr2	9656171	9657250	+	0	NA	Intergenic	AluSz|SINE|Alu	-25713	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
237680	chrX	124354101	124355250	+	0	NA	intron (NM_002351, intron 1 of 3)	MIR|SINE|MIR	8112	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
100331	chr17	59853001	59853600	+	0	NA	Intergenic	Intergenic	12034	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
26616	chr10	22336301	22337130	+	0	NA	Intergenic	Intergenic	-8730	NM_001253855	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
36707	chr11	8959501	8960400	+	0	NA	intron (NM_001286094, intron 1 of 3)	intron (NM_001286094, intron 1 of 3)	4492	NM_020644	56674		NM_020644	ENSG00000175348	TMEM9B	C11orf15	TMEM9 domain family member B	protein-coding
220550	chr8	100708471	100708830	+	0	NA	intron (NM_002568, intron 9 of 14)	AluSx1|SINE|Alu	-5626	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
100004	chr17	57860801	57862080	+	0	NA	3' UTR (NM_001271875, exon 11 of 11)	3' UTR (NM_001271875, exon 11 of 11)	-11396	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
163311	chr3	50356121	50356730	+	0	NA	intron (NM_007024, intron 1 of 1)	intron (NM_007024, intron 1 of 1)	3096	NM_007024	11070		NM_007024	ENSG00000126062	TMEM115	PL6	transmembrane protein 115	protein-coding
123785	chr19	55120021	55120300	+	0	NA	Intergenic	AluSz|SINE|Alu	-2523	NM_001271618	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
234337	chrX	14875201	14875400	+	0	NA	intron (NM_152581, intron 2 of 14)	L2a|LINE|L2	1879	NM_001330241	158747		NM_152581	ENSG00000130150	MOSPD2	-	motile sperm domain containing 2	protein-coding
75036	chr15	64147021	64147480	+	0	NA	Intergenic	Intergenic	-4481	NR_073534	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
24715	chr1	247372701	247373230	+	0	NA	intron (NR_168397, intron 2 of 3)	intron (NR_168397, intron 2 of 3)	40911	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
215295	chr7	157292971	157293130	+	0	NA	Intergenic	Intergenic	-43954	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
104339	chr17	80969571	80969800	+	0	NA	intron (NR_148968, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	1528	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
81219	chr16	4514401	4514950	+	0	NA	intron (NM_001199055, intron 1 of 5)	intron (NM_001199055, intron 1 of 5)	18817	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
85211	chr16	47141701	47142450	+	0	NA	intron (NM_001201477, intron 1 of 8)	intron (NM_001201477, intron 1 of 8)	1870	NM_018092	81831		NM_018092	ENSG00000171208	NETO2	BTCL2|NEOT2	neuropilin and tolloid like 2	protein-coding
149496	chr21	32537321	32537580	+	0	NA	Intergenic	AluSx|SINE|Alu	48073	NM_144659	140290		NM_018277	ENSG00000242220	TCP10L	C21orf77|LINC00846|PRED77|TCP10A-1|TCP10A-2	t-complex 10 like	protein-coding
38128	chr11	35248671	35248930	+	0	NA	Intergenic	Intergenic	85850	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
131950	chr2	99348201	99348600	+	0	NA	intron (NM_015904, intron 1 of 23)	intron (NM_015904, intron 1 of 23)	11011	NM_015904	9669		NM_015904	ENSG00000158417	EIF5B	IF2	eukaryotic translation initiation factor 5B	protein-coding
159766	chr3	16296221	16296680	+	0	NA	intron (NM_001352980, intron 7 of 9)	L1ME1|LINE|L1	31238	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
102767	chr17	76288171	76288330	+	0	NA	intron (NM_032134, intron 5 of 18)	AluSx1|SINE|Alu	19430	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
24674	chr1	247125121	247125530	+	0	NA	intron (NM_001243740, intron 3 of 3)	L1MB8|LINE|L1	-12908	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
5393	chr1	25476151	25476550	+	0	NA	intron (NM_018202, intron 6 of 10)	intron (NM_018202, intron 6 of 10)	45453	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
232769	chr9	136676471	136676630	+	0	NA	intron (NM_001012727, intron 3 of 4)	intron (NM_001012727, intron 3 of 4)	5948	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
134080	chr2	131520001	131521000	+	0	NA	non-coding (NR_026922, exon 18 of 18)	non-coding (NR_026922, exon 18 of 18)	-7175	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
38821	chr11	47298201	47298400	+	0	NA	intron (NR_164842, intron 23 of 33)	intron (NR_164842, intron 23 of 33)	-26190	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
231106	chr9	129809221	129809530	+	0	NA	exon (NM_014506, exon 5 of 5)	exon (NM_014506, exon 5 of 5)	6191	NM_001317894	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
163817	chr3	52441101	52441300	+	0	NA	intron (NM_020163, intron 7 of 15)	intron (NM_020163, intron 7 of 15)	3903	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
189598	chr5	175691071	175691230	+	0	NA	intron (NM_001367711, intron 2 of 2)	intron (NM_001367711, intron 2 of 2)	33079	NM_001367711	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
96957	chr17	42193351	42193450	+	0	NA	exon (NM_001142623, exon 3 of 10)	exon (NM_001142623, exon 3 of 10)	1094	NM_001142623	84514		NM_032484	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
69136	chr14	92543971	92544930	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	30669	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
64827	chr14	35114871	35115480	+	0	NA	intron (NM_001305155, intron 1 of 11)	AluJr|SINE|Alu	7367	NM_001305155	55012		NM_017917	ENSG00000092020	PPP2R3C	C14orf10|G4-1|G5pr|GDRM|MEGD|SPGF36	protein phosphatase 2 regulatory subunit B''gamma	protein-coding
166879	chr3	123962801	123963000	+	0	NA	Intergenic	Intergenic	-1671	NM_022757	64770		NM_022757	ENSG00000175455	CCDC14	-	coiled-coil domain containing 14	protein-coding
131600	chr2	96872921	96873550	+	0	NA	Intergenic	Intergenic	-3155	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
211064	chr7	102469451	102469550	+	0	NA	intron (NM_001317721, intron 9 of 14)	intron (NM_001317721, intron 9 of 14)	-1969	NR_039677	100616367		NR_039677	ENSG00000284596	MIR4467	-	microRNA 4467	ncRNA
201898	chr6	151241071	151241230	+	0	NA	intron (NM_005100, intron 2 of 4)	CpG-24122	1183	NM_005100	9590		NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
20199	chr1	193117651	193118230	+	0	NA	Intergenic	L1MCa|LINE|L1	-4091	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
70561	chr14	102586771	102587130	+	0	NA	Intergenic	L1MB8|LINE|L1	-5699	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
225024	chr9	33142521	33142900	+	0	NA	intron (NM_001378495, intron 1 of 5)	AluJr|SINE|Alu	-24238	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
73630	chr15	44662101	44662700	+	0	NA	intron (NM_025137, intron 1 of 39)	AluJb|SINE|Alu	1262	NM_001160227	80208		NM_025137	ENSG00000104133	SPG11	ALS5|CMT2X|KIAA1840	SPG11 vesicle trafficking associated, spatacsin	protein-coding
230839	chr9	129084721	129084980	+	0	NA	intron (NR_072983, intron 2 of 5)	intron (NR_072983, intron 2 of 5)	3739	NR_072983	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
100837	chr17	64119421	64119680	+	0	NA	intron (NM_001433, intron 1 of 21)	AluSq|SINE|Alu	10594	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
10114	chr1	59071271	59071650	+	0	NA	intron (NR_110626, intron 2 of 2)	LTR50|LTR|ERVL	50984	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
5864	chr1	26740471	26740630	+	0	NA	intron (NM_139135, intron 4 of 19)	intron (NM_139135, intron 4 of 19)	44535	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
71743	chr15	20640471	20640980	+	0	NA	Intergenic	Intergenic	78376	NR_027411	729786		NR_027411	ENSG00000181984	GOLGA8CP	GOLGA8C	golgin A8 family member C, pseudogene	pseudo
125343	chr2	10834651	10835640	+	0	NA	intron (NM_001282705, intron 1 of 13)	intron (NM_001282705, intron 1 of 13)	2567	NM_001282705	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
22441	chr1	220690051	220690630	+	0	NA	promoter-TSS (NM_024709)	promoter-TSS (NM_024709)	-23	NM_024709	79762		NM_024709	ENSG00000162817	C1orf115	RDD1	chromosome 1 open reading frame 115	protein-coding
43993	chr11	94457751	94457850	+	0	NA	intron (NM_005590, intron 13 of 18)	MIR|SINE|MIR	8780	NR_031630	100302275		NR_031630	ENSG00000221230	MIR548L	MIRN548L|hsa-mir-548l	microRNA 548l	ncRNA
154489	chr22	35653571	35653730	+	0	NA	intron (NM_030641, intron 1 of 2)	MSTD|LTR|ERVL-MaLR	5204	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
43822	chr11	86796541	86796650	+	0	NA	intron (NM_001293180, intron 1 of 1)	AluY|SINE|Alu	-3947	NR_120593	11098		NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	serine protease 23	protein-coding
212011	chr7	114889551	114889980	+	0	NA	Intergenic	Intergenic	-32389	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
100496	chr17	61934751	61935250	+	0	NA	Intergenic	U6|snRNA|snRNA	-7018	NM_001351695	57508		NM_020748	ENSG00000108506	INTS2	INT2|KIAA1287	integrator complex subunit 2	protein-coding
102510	chr17	75781571	75781730	+	0	NA	Intergenic	AluSc|SINE|Alu	-1871	NM_005324	3021		NM_005324	ENSG00000132475	H3-3B	BRYLIB2|H3-3A|H3.3B|H3F3B	H3.3 histone B	protein-coding
31980	chr10	100748671	100749880	+	0	NA	intron (NM_003987, intron 1 of 10)	CpG	3693	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
111267	chr19	3540871	3541230	+	0	NA	intron (NM_001135580, intron 1 of 3)	AluSg4|SINE|Alu	1893	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
125227	chr2	10356301	10356780	+	0	NA	intron (NM_001258357, intron 1 of 4)	MIRb|SINE|MIR	-12138	NM_001258358	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
180970	chr5	35771971	35772330	+	0	NA	intron (NM_024867, intron 27 of 36)	intron (NM_024867, intron 27 of 36)	-84741	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
96435	chr17	40189121	40189680	+	0	NA	intron (NM_001303534, intron 6 of 14)	intron (NM_001303534, intron 6 of 14)	-4197	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
87072	chr16	68379321	68380180	+	0	NA	intron (NM_018667, intron 2 of 8)	intron (NM_018667, intron 2 of 8)	68636	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
195120	chr6	35665421	35666430	+	0	NA	intron (NM_001145775, intron 2 of 11)	MER47A|DNA|TcMar-Tigger	-1136	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
70292	chr14	101767051	101767350	+	0	NA	intron (NM_001352915, intron 2 of 14)	intron (NM_001352915, intron 2 of 14)	4830	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
38783	chr11	47212671	47212830	+	0	NA	Intergenic	AluSz|SINE|Alu	-2192	NM_001300734	1643		NM_000107	ENSG00000134574	DDB2	DDBB|UV-DDB2|XPE	damage specific DNA binding protein 2	protein-coding
193880	chr6	31580581	31581920	+	0	NA	intron (NM_002341, intron 3 of 3).7	CpG	1174	NM_002341	4050		NM_002341	ENSG00000227507	LTB	TNFC|TNFSF3|TNLG1C|p33	lymphotoxin beta	protein-coding
7485	chr1	33180301	33181600	+	0	NA	intron (NM_018207, intron 1 of 4)	CpG	1093	NM_018207	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
78940	chr15	101268671	101268830	+	0	NA	Intergenic	Intergenic	8735	NM_018445	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
19926	chr1	184465671	184466030	+	0	NA	intron (NM_030806, intron 1 of 5)	intron (NM_030806, intron 1 of 5)	78821	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
149837	chr21	35035521	35035980	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	3676	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
208700	chr7	73282671	73282830	+	0	NA	Intergenic	Intergenic	26076	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
86482	chr16	66986751	66987050	+	0	NA	Intergenic	Intergenic	-1689	NM_173815	283848		NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
134201	chr2	134460301	134460830	+	0	NA	intron (NM_030923, intron 6 of 7)	intron (NM_030923, intron 6 of 7)	206493	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
45514	chr11	118696821	118697550	+	0	NA	Intergenic	Intergenic	-17535	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
117488	chr19	19807951	19808530	+	0	NA	intron (NM_001099269, intron 1 of 3)	AluY|SINE|Alu	13510	NM_001099269	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
100468	chr17	61412101	61413430	+	0	NA	non-coding (NR_160788, exon 1 of 1)	non-coding (NR_160788, exon 1 of 1)	1014	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
235738	chrX	48936521	48937780	+	0	NA	intron (NM_001136157, intron 2 of 8)	intron (NM_001136157, intron 2 of 8)	-18126	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
39389	chr11	60265621	60265880	+	0	NA	Intergenic	Intergenic	-14916	NM_148975	51338		NM_024021	ENSG00000110079	MS4A4A	4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7	membrane spanning 4-domains A4A	protein-coding
49317	chr12	21642921	21643280	+	0	NA	intron (NM_001174097, intron 4 of 7)	intron (NM_001174097, intron 4 of 7)	14694	NM_001174097	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
20027	chr1	185310351	185310950	+	0	NA	intron (NM_006469, intron 2 of 14)	AluJo|SINE|Alu	6593	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
112300	chr19	5872871	5873400	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2595	NM_002034	2527		NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding
11772	chr1	92464601	92465680	+	0	NA	Intergenic	MIR3|SINE|MIR	18814	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
233002	chr9	137006151	137006830	+	0	NA	TTS (NM_001606)	TTS (NM_001606)	-9922	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
82107	chr16	14600171	14600480	+	0	NA	intron (NM_002582, intron 11 of 23)	intron (NM_002582, intron 11 of 23)	29935	NM_001134477	5073		NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding
202534	chr6	158628601	158628900	+	0	NA	intron (NR_164859, intron 14 of 16)	MIR|SINE|MIR	15993	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
210236	chr7	99373801	99375000	+	0	NA	promoter-TSS (NM_005720)	promoter-TSS (NM_005720)	-330	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
155385	chr22	38312671	38312830	+	0	NA	intron (NM_152221, intron 2 of 10)	MIRc|SINE|MIR	4683	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
125049	chr2	9613401	9614450	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	17072	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
161420	chr3	41405521	41405780	+	0	NA	intron (NM_017886, intron 34 of 36)	L1PA16|LINE|L1	206145	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
170050	chr3	182796551	182796850	+	0	NA	intron (NM_014616, intron 1 of 29)	intron (NM_014616, intron 1 of 29)	3196	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
7151	chr1	32225021	32225950	+	0	NA	intron (NM_003757, intron 5 of 11)	AluSq2|SINE|Alu	-3114	NR_133636	56063		NM_019118	ENSG00000160055	TMEM234	AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7	transmembrane protein 234	protein-coding
157695	chr22	46362301	46362500	+	0	NA	3' UTR (NM_014246, exon 35 of 35)	3' UTR (NM_014246, exon 35 of 35)	26686	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
117615	chr19	23116821	23117280	+	0	NA	promoter-TSS (NM_001277403)	promoter-TSS (NM_001277403)	25	NM_001277403	100129543		NM_001277403	ENSG00000183850	ZNF730	-	zinc finger protein 730	protein-coding
177282	chr4	109558051	109558800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1821	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
8447	chr1	40688771	40689550	+	0	NA	TTS (NR_024567)	TTS (NR_024567)	-2544	NM_001142588	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
184691	chr5	108747201	108748100	+	0	NA	promoter-TSS (NM_005246)	promoter-TSS (NM_005246)	-247	NM_005246	2241		NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding
125192	chr2	10141321	10142000	+	0	NA	intron (NR_164157, intron 9 of 12)	intron (NR_164157, intron 9 of 12)	18921	NM_001034	6241		NM_001034	ENSG00000171848	RRM2	C2orf48|R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
177913	chr4	129854351	129854530	+	0	NA	intron (NR_151713, intron 10 of 16)	L1PA3|LINE|L1	82821	NR_151713	107986313		NR_151713	ENSG00000249618	LINC02465	-	long intergenic non-protein coding RNA 2465	ncRNA
93061	chr17	17486871	17487450	+	0	NA	intron (NM_018019, intron 1 of 1)	LTR12C|LTR|ERV1	9235	NM_016084	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
149468	chr21	31727621	31728280	+	0	NA	intron (NM_001145444, intron 1 of 18)	intron (NM_001145444, intron 1 of 18)	4168	NM_001145445	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
77217	chr15	80997971	80998930	+	0	NA	promoter-TSS (NR_039739)	promoter-TSS (NR_039739)	-977	NR_039739	100616181		NR_039739	ENSG00000265855	MIR4514	-	microRNA 4514	ncRNA
171832	chr4	683351	683450	+	0	NA	intron (NM_032219, intron 7 of 9)	intron (NM_032219, intron 7 of 9)	5478	NM_002477	4636		NM_002477	ENSG00000215375	MYL5	MYLC2	myosin light chain 5	protein-coding
159798	chr3	16328351	16328650	+	0	NA	intron (NM_015150, intron 7 of 9)	intron (NM_015150, intron 7 of 9)	63288	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
67013	chr14	67497751	67498050	+	0	NA	intron (NM_001348546, intron 1 of 2)	MER20B|DNA|hAT-Charlie	-9179	NM_001348543	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
119718	chr19	41194451	41194550	+	0	NA	intron (NM_030622, intron 1 of 8)	intron (NM_030622, intron 1 of 8)	1281	NM_030622	29785		NM_030622	ENSG00000167600	CYP2S1	CYPIIS1	cytochrome P450 family 2 subfamily S member 1	protein-coding
24927	chr10	1109751	1110700	+	0	NA	intron (NM_014023, intron 11 of 13)	intron (NM_014023, intron 11 of 13)	-49543	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
33409	chr10	118594351	118594950	+	0	NA	exon (NM_004248, exon 2 of 2)	exon (NM_004248, exon 2 of 2)	998	NM_004248	2834		NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
225942	chr9	40996771	40997350	+	0	NA	intron (NR_156730, intron 2 of 6)	L1MEc|LINE|L1	4799	NR_034006	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
198427	chr6	106092101	106092500	+	0	NA	intron (NM_001198, intron 2 of 6)	intron (NM_001198, intron 2 of 6)	5964	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
113028	chr19	7933321	7934880	+	0	NA	exon (NM_006351, exon 5 of 13)	exon (NM_006351, exon 5 of 13)	-7965	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
230765	chr9	128905951	128906350	+	0	NA	intron (NM_019594, intron 2 of 3)	AluJr|SINE|Alu	-14832	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
105435	chr17	82891821	82892330	+	0	NA	intron (NM_005993, intron 16 of 38)	MIRc|SINE|MIR	-52053	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
37427	chr11	17351051	17352700	+	0	NA	promoter-TSS (NM_001202439)	promoter-TSS (NM_001202439)	75	NM_001202439	374383		NM_001009913	ENSG00000188211	NCR3LG1	B7-H6|B7H6|DKFZp686O24166	natural killer cell cytotoxicity receptor 3 ligand 1	protein-coding
156137	chr22	40121521	40121980	+	0	NA	intron (NM_001024843, intron 2 of 23)	intron (NM_001024843, intron 2 of 23)	-56175	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
133909	chr2	130229021	130229330	+	0	NA	Intergenic	CpG	-30736	NM_207312	112714		NM_207312	ENSG00000152086	TUBA3E	-	tubulin alpha 3e	protein-coding
203907	chr7	1499801	1500000	+	0	NA	exon (NM_001080453, exon 5 of 48)	exon (NM_001080453, exon 5 of 48)	4489	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
104033	chr17	80128871	80129030	+	0	NA	Intergenic	Intergenic	18178	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
181290	chr5	39578851	39579180	+	0	NA	Intergenic	Intergenic	58584	NR_104632	101926940		NR_104632	ENSG00000271334	LINC02104	-	long intergenic non-protein coding RNA 2104	ncRNA
189566	chr5	175471621	175472050	+	0	NA	Intergenic	Intergenic	-6725	NM_001322978	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
218367	chr8	43142251	43142750	+	0	NA	intron (NM_001363228, intron 1 of 15)	intron (NM_001363228, intron 1 of 15)	2036	NM_001363228	138050		NM_025070	ENSG00000165102	HGSNAT	HGNAT|MPS3C|RP73|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
3870	chr1	16978501	16979150	+	0	NA	intron (NM_001135247, intron 1 of 8)	intron (NM_001135247, intron 1 of 8)	1795	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
165993	chr3	108099901	108100380	+	0	NA	Intergenic	Intergenic	-9109	NM_001777	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
179823	chr5	465251	465550	+	0	NA	intron (NM_007277, intron 11 of 12)	CpG-21788	7565	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
62210	chr13	98473221	98473880	+	0	NA	intron (NM_003576, intron 5 of 10)	intron (NM_003576, intron 5 of 10)	48575	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
201866	chr6	150631551	150631850	+	0	NA	intron (NM_001329799, intron 1 of 15)	intron (NM_001329799, intron 1 of 15)	-1264	NR_138140	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
232835	chr9	136743651	136743750	+	0	NA	promoter-TSS (NM_001001712)	promoter-TSS (NM_001001712)	-760	NM_001001712	414332		NM_001001712	ENSG00000187922	LCN10	-	lipocalin 10	protein-coding
203657	chr7	989821	990480	+	0	NA	TTS (NM_017781)	TTS (NM_017781)	6969	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
133659	chr2	127055571	127056180	+	0	NA	intron (NM_139344, intron 11 of 17)	intron (NM_139344, intron 11 of 17)	26190	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
174612	chr4	40285621	40286250	+	0	NA	Intergenic	Intergenic	-21250	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
114285	chr19	11598921	11599430	+	0	NA	intron (NM_001290084, intron 1 of 3)	intron (NM_001290084, intron 1 of 3)	1692	NM_001290085	199692		NM_145295	ENSG00000198551	ZNF627	-	zinc finger protein 627	protein-coding
153749	chr22	29330751	29331280	+	0	NA	intron (NM_001378564, intron 18 of 20)	intron (NM_001378564, intron 18 of 20)	2243	NR_003686	100113380		NR_003686	ENSG00000239127	SNORD125	-	small nucleolar RNA, C/D box 125	snoRNA
74150	chr15	55269101	55269300	+	0	NA	intron (NM_183234, intron 1 of 6)	MLT1B|LTR|ERVL-MaLR	1086	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
111133	chr19	3272901	3273600	+	0	NA	intron (NM_021938, intron 2 of 12)	MLT1H|LTR|ERVL-MaLR	47972	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
100304	chr17	59797121	59797380	+	0	NA	intron (NM_030938, intron 7 of 11)	AluSg|SINE|Alu	-44016	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
209437	chr7	76391851	76392050	+	0	NA	intron (NM_080744, intron 10 of 10)	intron (NM_080744, intron 10 of 10)	-5572	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
139439	chr2	223759071	223759230	+	0	NA	intron (NM_001039569, intron 4 of 4)	AluSx|SINE|Alu	78432	NM_001039569	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
45498	chr11	118634471	118635250	+	0	NA	intron (NM_001144759, intron 9 of 20)	CpG	-9140	NR_106773	102466719		NR_106773	ENSG00000284246	MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
163011	chr3	49789701	49790930	+	0	NA	TTS (NM_001007540)	TTS (NM_001007540)	-3773	NM_153273	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
65915	chr14	55297871	55298230	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	25896	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
193207	chr6	29788801	29789000	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-3006	NR_132323	352962		NM_001207043	ENSG00000290710	HLA-V	HLA-75|dJ377H14.4	major histocompatibility complex, class I, V (pseudogene)	pseudo
36737	chr11	9263701	9264690	+	0	NA	intron (NM_001243254, intron 1 of 22)	intron (NM_001243254, intron 1 of 22)	1131	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
123100	chr19	51546871	51547030	+	0	NA	Intergenic	AluJo|SINE|Alu	-15280	NM_001177549	946		NM_001245	ENSG00000105492	SIGLEC6	CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1	sialic acid binding Ig like lectin 6	protein-coding
100031	chr17	57995201	57996400	+	0	NA	Intergenic	Intergenic	-7546	NM_007146	7716		NM_007146	ENSG00000136451	VEZF1	CMD1OO|DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
210530	chr7	100232101	100232300	+	0	NA	intron (NR_166147, intron 2 of 4)	AluY|SINE|Alu	12952	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
169721	chr3	172142321	172142780	+	0	NA	intron (NM_022763, intron 3 of 25)	intron (NM_022763, intron 3 of 25)	102019	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
10505	chr1	66750671	66750830	+	0	NA	3' UTR (NM_001376539, exon 25 of 25)	3' UTR (NM_001376539, exon 25 of 25)	-1709	NM_152665	200132		NM_152665	ENSG00000152760	DYNLT5	TCTEX1D1	dynein light chain Tctex-type family member 5	protein-coding
5044	chr1	24534351	24534450	+	0	NA	intron (NM_001251980, intron 3 of 3)	AluY|SINE|Alu	20086	NM_001251982	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
223606	chr8	144310351	144311650	+	0	NA	intron (NM_005526, intron 4 of 12)	intron (NM_005526, intron 4 of 12)	6315	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
125376	chr2	11154501	11155920	+	0	NA	promoter-TSS (NM_001282712)	promoter-TSS (NM_001282712)	-162	NM_001282710	130814		NM_152391	ENSG00000162976	SLC66A3	C2orf22|PQLC3	solute carrier family 66 member 3	protein-coding
46362	chr11	126065151	126065250	+	0	NA	Intergenic	Intergenic	-1908	NM_016952	50937		NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|Ihog|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
235090	chrX	40266421	40267300	+	0	NA	intron (NR_110386, intron 1 of 2)	intron (NR_110386, intron 1 of 2)	3943	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
178002	chr4	139300521	139301800	+	0	NA	promoter-TSS (NM_002494)	promoter-TSS (NM_002494)	50	NM_001184991	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
180794	chr5	32279401	32279600	+	0	NA	intron (NM_001294344, intron 1 of 13)	intron (NM_001294344, intron 1 of 13)	33439	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
45105	chr11	117096531	117097280	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	1523	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
3523	chr1	16067201	16067680	+	0	NA	intron (NM_182623, intron 1 of 6)	intron (NM_182623, intron 1 of 6)	6211	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
207639	chr7	45034751	45034850	+	0	NA	intron (NM_001029835, intron 1 of 9)	AluSq2|SINE|Alu	7166	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
86394	chr16	66695721	66697450	+	0	NA	5' UTR (NM_181521, exon 1 of 4)	5' UTR (NM_181521, exon 1 of 4)	158	NM_181521	146223		NM_178818	ENSG00000183723	CMTM4	CKLFSF4	CKLF like MARVEL transmembrane domain containing 4	protein-coding
119122	chr19	39350571	39350730	+	0	NA	intron (NM_001384594, intron 2 of 13)	AluSx1|SINE|Alu	8229	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
137637	chr2	197387671	197388030	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	47178	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
234804	chrX	24023121	24023530	+	0	NA	intron (NM_030624, intron 2 of 3)	intron (NM_030624, intron 2 of 3)	3861	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
236945	chrX	100829621	100830150	+	0	NA	intron (NM_001325, intron 8 of 13)	intron (NM_001325, intron 8 of 13)	9494	NM_001325	1478		NM_001325	ENSG00000101811	CSTF2	CSTF64|CstF-64|XLID113	cleavage stimulation factor subunit 2	protein-coding
223956	chr9	1051721	1052380	+	0	NA	exon (NM_006557, exon 2 of 4)	exon (NM_006557, exon 2 of 4)	563	NM_001370532	10655		NM_006557	ENSG00000173253	DMRT2	DSXL-2	doublesex and mab-3 related transcription factor 2	protein-coding
136195	chr2	174562321	174562780	+	0	NA	exon (NM_001375834, exon 8 of 8)	exon (NM_001375834, exon 8 of 8)	-4478	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
19097	chr1	171482971	171484100	+	0	NA	Intergenic	Intergenic	-1995	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
141498	chr2	241112231	241113330	+	0	NA	TTS (NM_001252124)	TTS (NM_001252124)	-10448	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
148695	chr21	6367951	6368050	+	0	NA	Intergenic	L1MB3|LINE|L1	92082	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
151768	chr22	17996351	17998150	+	0	NA	intron (NM_015241, intron 1 of 31)	AluJo|SINE|Alu	-16289	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
190878	chr6	2247251	2247430	+	0	NA	intron (NR_046229, intron 1 of 6)	intron (NR_046229, intron 1 of 6)	1587	NR_046229	100508120		NR_046229	ENSG00000250903	GMDS-DT	GMDS-AS1	GMDS divergent transcript	ncRNA
215419	chr7	157620801	157621200	+	0	NA	intron (NM_130842, intron 14 of 21)	intron (NM_130842, intron 14 of 21)	-46578	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
18512	chr1	161770021	161770480	+	0	NA	intron (NM_007348, intron 1 of 15)	L1MC2|LINE|L1	3930	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
73479	chr15	43593371	43594130	+	0	NA	promoter-TSS (NR_135748)	promoter-TSS (NR_135748)	-84	NR_135751	1159		NM_020990	ENSG00000237289	CKMT1B	CKMT|CKMT1|UMTCK	creatine kinase, mitochondrial 1B	protein-coding
29839	chr10	72336971	72338100	+	0	NA	intron (NR_157570, intron 6 of 8)	intron (NR_157570, intron 6 of 8)	17384	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
149304	chr21	28884651	28885650	+	0	NA	intron (NM_182749, intron 1 of 4)	CpG	217	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
202386	chr6	157831601	157831800	+	0	NA	intron (NM_016224, intron 1 of 17)	L1MEd|LINE|L1	8454	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
149031	chr21	14610551	14610850	+	0	NA	intron (NM_001256579, intron 3 of 6)	MER11B|LTR|ERVK	-27298	NM_001256370	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
79799	chr16	1395471	1396250	+	0	NA	intron (NM_001372107, intron 6 of 14)	MER77|LTR|ERVL	-16208	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
9749	chr1	53295771	53296600	+	0	NA	intron (NM_017522, intron 2 of 15)	intron (NM_017522, intron 2 of 15)	31885	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
60896	chr13	46158371	46158530	+	0	NA	intron (NM_002298, intron 4 of 15)	intron (NM_002298, intron 4 of 15)	23727	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
41754	chr11	66687801	66688000	+	0	NA	exon (NM_006946, exon 34 of 38)	exon (NM_006946, exon 34 of 38)	-10013	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
186339	chr5	134741101	134741700	+	0	NA	exon (NM_001745, exon 2 of 4)	exon (NM_001745, exon 2 of 4)	2852	NM_001745	819		NM_001745	ENSG00000164615	CAMLG	CAML|CDG2Z|GET2	calcium modulating ligand	protein-coding
97917	chr17	45140801	45141000	+	0	NA	intron (NM_001135705, intron 9 of 9)	AluSx1|SINE|Alu	5213	NM_001135707	79777		NM_024722	ENSG00000181513	ACBD4	HMFT0700	acyl-CoA binding domain containing 4	protein-coding
204505	chr7	4784321	4784900	+	0	NA	intron (NR_157345, intron 6 of 16)	intron (NR_157345, intron 6 of 16)	4029	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
189260	chr5	172048601	172049200	+	0	NA	intron (NM_005990, intron 18 of 18)	L2b|LINE|L2	-42262	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
164382	chr3	58299971	58300830	+	0	NA	Intergenic	Intergenic	-5845	NM_001348713	109703458		NM_001348712	ENSG00000255154	HTD2	-	hydroxyacyl-thioester dehydratase type 2	protein-coding
181596	chr5	43481801	43482230	+	0	NA	intron (NM_001377401, intron 1 of 3)	AluY|SINE|Alu	1850	NM_001377401	64417		NM_022483	ENSG00000151881	TMEM267	C5orf28	transmembrane protein 267	protein-coding
51673	chr12	53065801	53066830	+	0	NA	exon (NM_032840, exon 10 of 11)	exon (NM_032840, exon 10 of 11)	9371	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
7877	chr1	36411771	36412400	+	0	NA	Intergenic	MER51A|LTR|ERV1	6493	NR_145725	109616970		NR_145725	ENSG00000201448	SNORA63C	-	small nucleolar RNA, H/ACA box 63C	snoRNA
212817	chr7	130421901	130422300	+	0	NA	intron (NM_001257160, intron 2 of 2)	intron (NM_001257160, intron 2 of 2)	18916	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
61330	chr13	50528021	50528280	+	0	NA	promoter-TSS (NR_125753)	promoter-TSS (NR_125753)	-701	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
239108	chrY	11210821	11211180	+	0	NA	Intergenic	MER57A1|LTR|ERV1	1210590	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
159030	chr3	11060801	11061000	+	0	NA	Intergenic	Intergenic	-41676	NR_046647	100874090		NR_046647	ENSG00000232287	SLC6A1-AS1	-	SLC6A1 antisense RNA 1	ncRNA
183988	chr5	89477551	89477650	+	0	NA	Intergenic	AluYb8|SINE|Alu	539120	NR_037433	100500825		NR_037433	ENSG00000264342	MIR3660	mir-3660	microRNA 3660	ncRNA
180693	chr5	21487271	21487430	+	0	NA	intron (NR_027026, intron 3 of 4)	MLT1G3|LTR|ERVL-MaLR	27870	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
209896	chr7	91945151	91945900	+	0	NA	intron (NM_147185, intron 1 of 49)	AluSx1|SINE|Alu	4663	NM_005751	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
18388	chr1	161395371	161395730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-27674	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
228935	chr9	113277521	113277780	+	0	NA	intron (NR_136266, intron 2 of 13)	AluSx1|SINE|Alu	1992	NM_001322266	9128		NM_004697	ENSG00000136875	PRPF4	HPRP4|HPRP4P|PRP4|Prp4p|RP70|SNRNP60	pre-mRNA splicing tri-snRNP complex factor PRPF4	protein-coding
69288	chr14	93083301	93083880	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	16138	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
186033	chr5	134007451	134008100	+	0	NA	Intergenic	Intergenic	-2800	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
156263	chr22	40414001	40414300	+	0	NA	intron (NM_001282661, intron 13 of 13)	AluSx1|SINE|Alu	43556	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
7575	chr1	35173571	35173730	+	0	NA	Intergenic	L1MB7|LINE|L1	19495	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
141466	chr2	241067771	241067930	+	0	NA	exon (NM_001080437, exon 22 of 32)	exon (NM_001080437, exon 22 of 32)	34437	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
229225	chr9	114919671	114920350	+	0	NA	intron (NM_001244, intron 1 of 3)	intron (NM_001244, intron 1 of 3)	10581	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
111716	chr19	4327701	4329000	+	0	NA	intron (NM_001013841, intron 6 of 12)	intron (NM_001013841, intron 6 of 12)	10477	NM_001013841	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
151796	chr22	18196801	18197500	+	0	NA	intron (NR_136570, intron 3 of 11)	intron (NR_136570, intron 3 of 11)	8759	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
47666	chr12	6330371	6330530	+	0	NA	intron (NR_144351, intron 6 of 8)	intron (NR_144351, intron 6 of 8)	11626	NM_001346091	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
43340	chr11	76588501	76589050	+	0	NA	Intergenic	Intergenic	81163	NM_001370189	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
97725	chr17	44360051	44360680	+	0	NA	intron (NM_198475, intron 1 of 7)	MER104|DNA|TcMar-Tc2	3488	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
108442	chr18	70154771	70154930	+	0	NA	intron (NM_173630, intron 14 of 48)	intron (NM_173630, intron 14 of 48)	50837	NM_001318520	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
122441	chr19	49483171	49484380	+	0	NA	intron (NM_001278637, intron 8 of 8)	intron (NM_001278637, intron 8 of 8)	-3779	NM_001270491	23521		NM_012423	ENSG00000142541	RPL13A	L13A|TSTA1|uL13	ribosomal protein L13a	protein-coding
11404	chr1	89698101	89698300	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	65080	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
214315	chr7	149258751	149259450	+	0	NA	Intergenic	AluY|SINE|Alu	-3096	NM_001195220	100289678		NM_001195220	ENSG00000204946	ZNF783	-	zinc finger protein 783	protein-coding
127512	chr2	42295601	42295800	+	0	NA	intron (NM_019063, intron 13 of 22)	intron (NM_019063, intron 13 of 22)	64338	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
83859	chr16	28900701	28901200	+	0	NA	intron (NM_173201, intron 15 of 21)	intron (NM_173201, intron 15 of 21)	20907	NM_001286075	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
82339	chr16	15940501	15940950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8891	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
118786	chr19	38398021	38398550	+	0	NA	non-coding (NR_073032, exon 6 of 6)	non-coding (NR_073032, exon 6 of 6)	-4850	NM_174905	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
64685	chr14	32252101	32252450	+	0	NA	Intergenic	Intergenic	-49006	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
69939	chr14	99605101	99606330	+	0	NA	intron (NM_001329411, intron 1 of 8)	L2a|LINE|L2	1177	NM_001329411	84439		NM_032425	ENSG00000182218	HHIPL1	KIAA1822|UNQ9245	HHIP like 1	protein-coding
60351	chr13	40796801	40797000	+	0	NA	TTS (NR_038258)	TTS (NR_038258)	7289	NM_014252	10166		NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|LNC-HC|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
181568	chr5	43161021	43161500	+	0	NA	exon (NM_001330716, exon 5 of 8)	exon (NM_001330716, exon 5 of 8)	-30965	NM_153361	167359		NM_153361	ENSG00000177453	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
207701	chr7	45920621	45921550	+	0	NA	exon (NM_000598, exon 1 of 5)	exon (NM_000598, exon 1 of 5)	187	NM_001013398	3486		NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP-3|IBP3|IGFBP-3	insulin like growth factor binding protein 3	protein-coding
168259	chr3	141425271	141426280	+	0	NA	intron (NM_001376186, intron 3 of 3)	intron (NM_001376186, intron 3 of 3)	22761	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
66053	chr14	58352601	58353030	+	0	NA	intron (NM_023000, intron 16 of 23)	intron (NM_023000, intron 16 of 23)	-43115	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
209868	chr7	90412971	90413200	+	0	NA	exon (NM_001185073, exon 3 of 3)	exon (NM_001185073, exon 3 of 3)	9624	NM_001185073	9069		NM_012129	ENSG00000157224	CLDN12	-	claudin 12	protein-coding
219094	chr8	65870021	65870280	+	0	NA	Intergenic	MER48|LTR|ERV1	-28086	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
57942	chr12	123670911	123672200	+	0	NA	exon (NM_001143850, exon 2 of 18)	exon (NM_001143850, exon 2 of 18)	442	NM_024809	79867		NM_024809	ENSG00000168778	TCTN2	C12orf38|JBTS24|MKS8|TECT2	tectonic family member 2	protein-coding
90781	chr17	2071901	2072100	+	0	NA	intron (NM_001282326, intron 3 of 6)	intron (NM_001282326, intron 3 of 6)	15690	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
20996	chr1	202750821	202751080	+	0	NA	intron (NM_006618, intron 12 of 26)	intron (NM_006618, intron 12 of 26)	-40496	NM_177402	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
76257	chr15	74049721	74049980	+	0	NA	Intergenic	(TTAGGAA)n|Simple_repeat|Simple_repeat	32700	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
130203	chr2	84526551	84526850	+	0	NA	intron (NM_001370, intron 3 of 76)	intron (NM_001370, intron 3 of 76)	10202	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
224182	chr9	5352621	5353530	+	0	NA	Intergenic	Intergenic	-13199	NM_006911	6013		NM_006911	ENSG00000107018	RLN1	H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2	relaxin 1	protein-coding
94092	chr17	27630271	27630430	+	0	NA	promoter-TSS (NM_002308)	promoter-TSS (NM_002308)	-838	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
78393	chr15	91886971	91887130	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	32746	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
121159	chr19	46390501	46391050	+	0	NA	3' UTR (NM_006247, exon 13 of 13)	3' UTR (NM_006247, exon 13 of 13)	22789	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
65727	chr14	53112801	53113000	+	0	NA	intron (NM_030637, intron 1 of 11)	intron (NM_030637, intron 1 of 11)	40423	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
150594	chr21	43346251	43346550	+	0	NA	Intergenic	Intergenic	-14361	NR_103713	100126693		NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
110514	chr19	2066371	2066730	+	0	NA	Intergenic	AluY|SINE|Alu	-15306	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
102216	chr17	75228971	75229330	+	0	NA	intron (NM_024844, intron 11 of 18)	intron (NM_024844, intron 11 of 18)	23471	NM_024844	79902		NM_024844	ENSG00000125450	NUP85	FROUNT|NPHS17|Nup75	nucleoporin 85	protein-coding
165670	chr3	101860951	101861050	+	0	NA	TTS (NM_001005474)	TTS (NM_001005474)	11486	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
12606	chr1	109073551	109073850	+	0	NA	intron (NM_005645, intron 2 of 3)	SVA_B|Retroposon|SVA	2303	NM_005645	6884		NM_005645	ENSG00000197780	TAF13	MRT60|TAF(II)18|TAF2K|TAFII-18|TAFII18	TATA-box binding protein associated factor 13	protein-coding
159217	chr3	12900801	12901280	+	0	NA	exon (NM_001134382, exon 14 of 14)	exon (NM_001134382, exon 14 of 14)	-15829	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
119297	chr19	39826871	39827030	+	0	NA	exon (NM_004714, exon 9 of 11).2	exon (NM_004714, exon 9 of 11).2	2852	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
204164	chr7	2412451	2412780	+	0	NA	intron (NM_018641, intron 1 of 1)	intron (NM_018641, intron 1 of 1)	9004	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
106691	chr18	23283971	23284280	+	0	NA	Intergenic	MER41B|LTR|ERV1	128300	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
172856	chr4	3294671	3295530	+	0	NA	Intergenic	Intergenic	-19047	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
25815	chr10	11198201	11198400	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	33270	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
237563	chrX	120755101	120755300	+	0	NA	Intergenic	Intergenic	120725	NM_001145718	643311		NM_001145718	ENSG00000236446	CT47B1	CT47.13|CT47A13	cancer/testis antigen family 47 member B1	protein-coding
183549	chr5	80116371	80116850	+	0	NA	intron (NR_126061, intron 11 of 13)	intron (NR_126061, intron 11 of 13)	-32945	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
24096	chr1	235415251	235416000	+	0	NA	intron (NM_001287801, intron 4 of 17).2	intron (NM_001287801, intron 4 of 17).2	48198	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
195779	chr6	40491771	40492130	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	95414	NM_020737	57497		NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
98240	chr17	46163501	46164130	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	28967	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
90823	chr17	2282101	2283080	+	0	NA	intron (NM_017575, intron 8 of 18)	intron (NM_017575, intron 8 of 18)	-16405	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
200752	chr6	137807021	137807480	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-60009	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
6622	chr1	28891101	28891300	+	0	NA	intron (NM_001376022, intron 1 of 20)	MIR3|SINE|MIR	4100	NM_001376023	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
19129	chr1	171526371	171526700	+	0	NA	intron (NM_015172, intron 10 of 33)	AluSz6|SINE|Alu	41005	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
188672	chr5	157263751	157264050	+	0	NA	Intergenic	MIR3|SINE|MIR	-2223	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
89174	chr16	88546821	88549050	+	0	NA	Intergenic	Intergenic	14048	NR_146877	400555		NM_001001682		ZC3H18-AS1	C16orf85|LINC00859	ZC3H18 antisense RNA 1 (head to head)	ncRNA
90992	chr17	2723871	2725030	+	0	NA	exon (NM_001355573, exon 4 of 4)	exon (NM_001355573, exon 4 of 4)	12141	NR_136412	105371592		NR_136412		LOC105371592	-	uncharacterized LOC105371592	ncRNA
145205	chr20	38898601	38899280	+	0	NA	intron (NM_001172735, intron 4 of 9)	intron (NM_001172735, intron 4 of 9)	-27477	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
166873	chr3	123652471	123652630	+	0	NA	intron (NM_053027, intron 24 of 32)	intron (NM_053027, intron 24 of 32)	-32002	NM_053032	4638		NM_005965	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MMIHS|MMIHS1|MSTP083|MYLK-L|MYLK1|smMLCK	myosin light chain kinase	protein-coding
219406	chr8	70613601	70614000	+	0	NA	intron (NR_038881, intron 1 of 3)	L2|LINE|L2	5223	NR_038881	286190		NR_038881	ENSG00000246366	LACTB2-AS1	-	LACTB2 antisense RNA 1	ncRNA
156686	chr22	41668701	41669830	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	19602	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
19327	chr1	173476221	173478380	+	0	NA	promoter-TSS (NM_004905)	promoter-TSS (NM_004905)	-35	NM_004905	9588		NM_004905	ENSG00000117592	PRDX6	1-Cys|AOP2|HEL-S-128m|LPCAT-5|NSGPx|PRX|aiPLA2|p29	peroxiredoxin 6	protein-coding
81620	chr16	10776171	10776700	+	0	NA	intron (NM_001318873, intron 2 of 7)	intron (NM_001318873, intron 2 of 7)	32566	NM_001323597	4682		NM_002484	ENSG00000103274	NUBP1	CIAO5|NBP|NBP1|NBP35	NUBP iron-sulfur cluster assembly factor 1, cytosolic	protein-coding
231611	chr9	131565471	131565850	+	0	NA	Intergenic	AluSx3|SINE|Alu	20137	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
88559	chr16	85535521	85535780	+	0	NA	Intergenic	Intergenic	-75759	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
26352	chr10	15370421	15371650	+	0	NA	exon (NM_001010924, exon 1 of 8)	exon (NM_001010924, exon 1 of 8)	254	NM_001010924	221061		NM_001010924	ENSG00000148468	FAM171A1	APCN|C10orf38	family with sequence similarity 171 member A1	protein-coding
165124	chr3	71714901	71715300	+	0	NA	intron (NM_173359, intron 2 of 7)	MER20|DNA|hAT-Charlie	10302	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
218067	chr8	38916621	38917080	+	0	NA	intron (NM_021623, intron 1 of 11)	L1MA2|LINE|L1	15504	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
230833	chr9	129073251	129073980	+	0	NA	Intergenic	L1PA11|LINE|L1	-7496	NM_020438	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
3873	chr1	16980571	16981350	+	0	NA	promoter-TSS (NM_002403)	promoter-TSS (NM_002403)	-282	NM_001135248	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
163884	chr3	52512371	52512530	+	0	NA	intron (NM_015136, intron 27 of 68)	intron (NM_015136, intron 27 of 68)	17112	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
104333	chr17	80965071	80966100	+	0	NA	TTS (NR_148968)	TTS (NR_148968)	5628	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
113328	chr19	8593871	8594350	+	0	NA	intron (NM_030957, intron 12 of 25)	intron (NM_030957, intron 12 of 25)	-1914	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
112281	chr19	5822371	5822730	+	0	NA	intron (NM_004558, intron 1 of 2)	intron (NM_004558, intron 1 of 2)	16242	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
33439	chr10	119026401	119026600	+	0	NA	Intergenic	Intergenic	-3214	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
232763	chr9	136672571	136672730	+	0	NA	TTS (NM_201446)	TTS (NM_201446)	2048	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
99667	chr17	50726001	50726750	+	0	NA	intron (NM_001330330, intron 1 of 10)	AluSz6|SINE|Alu	6772	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
180288	chr5	2017601	2017830	+	0	NA	Intergenic	Intergenic	130384	NR_109912	101929081		NR_109912	ENSG00000249326	CTD-2194D22.4	-	uncharacterized LOC101929081	ncRNA
238681	chrX	154051251	154052250	+	0	NA	intron (NM_001369393, intron 1 of 3)	intron (NM_001369393, intron 1 of 3)	-31761	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
99378	chr17	49963851	49964350	+	0	NA	Intergenic	CpG	-5090	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
122712	chr19	49940051	49940650	+	0	NA	Intergenic	L1M2|LINE|L1	7286	NR_039906	100616483		NR_039906	ENSG00000283842	MIR4751	-	microRNA 4751	ncRNA
234210	chrX	12967801	12968780	+	0	NA	Intergenic	Intergenic	-6820	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
108711	chr18	77076251	77076550	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	56383	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
66786	chr14	64697801	64698200	+	0	NA	Intergenic	Intergenic	-6424	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
9414	chr1	47708321	47708580	+	0	NA	Intergenic	Intergenic	270406	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
21764	chr1	206914671	206914980	+	0	NA	intron (NM_001193338, intron 1 of 6)	intron (NM_001193338, intron 1 of 6)	7116	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
7527	chr1	34792721	34793130	+	0	NA	promoter-TSS (NM_002060)	promoter-TSS (NM_002060)	-74	NM_002060	2701		NM_002060	ENSG00000187513	GJA4	CX37	gap junction protein alpha 4	protein-coding
17489	chr1	156723001	156723550	+	0	NA	3' UTR (NM_001303095, exon 4 of 4)	3' UTR (NM_001303095, exon 4 of 4)	5164	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
174998	chr4	51831201	51831400	+	0	NA	Intergenic	MIRb|SINE|MIR	-11700	NM_015115	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
190907	chr6	2792601	2792800	+	0	NA	Intergenic	Intergenic	-22324	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
96356	chr17	40075101	40075930	+	0	NA	intron (NM_199334, intron 2 of 8)	intron (NM_199334, intron 2 of 8)	12550	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
170350	chr3	184563671	184564330	+	0	NA	intron (NM_004443, intron 1 of 15)	intron (NM_004443, intron 1 of 15)	2215	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
154483	chr22	35631371	35632080	+	0	NA	Intergenic	L2b|LINE|L2	-8371	NM_001382809	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
125349	chr2	10884321	10884980	+	0	NA	intron (NR_110575, intron 1 of 1)	intron (NR_110575, intron 1 of 1)	6383	NR_110575	101929733		NR_110575	ENSG00000271952	LINC01954	-	long intergenic non-protein coding RNA 1954	ncRNA
155085	chr22	37563551	37563650	+	0	NA	intron (NM_152243, intron 1 of 2)	intron (NM_152243, intron 1 of 2)	3120	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
101781	chr17	73190271	73190730	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-2555	NM_018714	9382		NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
232664	chr9	136503471	136503630	+	0	NA	intron (NM_017617, intron 26 of 33)	intron (NM_017617, intron 26 of 33)	16076	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
82137	chr16	14747921	14748250	+	0	NA	Intergenic	Intergenic	-2728	NM_001277324	642799		NM_001277324	ENSG00000254852	NPIPA2	NPIP|NPIPA1	nuclear pore complex interacting protein family member A2	protein-coding
76777	chr15	77004951	77005050	+	0	NA	intron (NR_135552, intron 1 of 11)	MER5B|DNA|hAT-Charlie	9874	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
53983	chr12	74899251	74899680	+	0	NA	Intergenic	Intergenic	310283	NM_139136	3747		NM_139136	ENSG00000166006	KCNC2	DEE103|KV3.2	potassium voltage-gated channel subfamily C member 2	protein-coding
220256	chr8	97646371	97646980	+	0	NA	intron (NM_178812, intron 1 of 11)	intron (NM_178812, intron 1 of 11)	2491	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
228502	chr9	100106621	100106880	+	0	NA	intron (NR_134606, intron 2 of 16)	MLT1J|LTR|ERVL-MaLR	7507	NM_014425	27130		NM_014425	ENSG00000119509	INVS	INV|NPH2|NPHP2	inversin	protein-coding
233302	chr9	137355251	137356000	+	0	NA	intron (NM_017820, intron 8 of 21)	(GAGGAAG)n|Simple_repeat|Simple_repeat	-53354	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
202501	chr6	158444171	158444400	+	0	NA	intron (NM_001007466, intron 3 of 12)	intron (NM_001007466, intron 3 of 12)	-92355	NM_020823	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
135672	chr2	168542951	168543380	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	-39778	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
112000	chr19	4971101	4972030	+	0	NA	intron (NM_001370093, intron 1 of 11)	intron (NM_001370093, intron 1 of 11)	2452	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
56464	chr12	116060521	116061200	+	0	NA	intron (NM_015335, intron 4 of 30)	intron (NM_015335, intron 4 of 30)	87794	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
153776	chr22	29580371	29581700	+	0	NA	promoter-TSS (NM_003634)	promoter-TSS (NM_003634)	61	NM_001202502	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
16079	chr1	153520231	153520350	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	15701	NM_014624	6277		NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA|S10A6	S100 calcium binding protein A6	protein-coding
118264	chr19	35261521	35262630	+	0	NA	intron (NM_205834, intron 4 of 9)	intron (NM_205834, intron 4 of 9)	-6887	NM_001321150	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
190657	chr5	181242931	181244430	+	0	NA	promoter-TSS (NR_002591)	promoter-TSS (NR_002591)	226	NM_006098	10399		NM_006098	ENSG00000204628	RACK1	GNB2L1|Gnb2-rs1|H12.3|HLC-7|PIG21	receptor for activated C kinase 1	protein-coding
86024	chr16	57501401	57501600	+	0	NA	Intergenic	L2b|LINE|L2	-15007	NM_018110	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
41274	chr11	65846871	65847600	+	0	NA	intron (NM_152760, intron 1 of 12)	AluJb|SINE|Alu	10945	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
133754	chr2	127563671	127563830	+	0	NA	intron (NR_132317, intron 2 of 2)	L1M7|LINE|L1	7212	NR_132317	105373609		NR_132317		LOC105373609	-	uncharacterized LOC105373609	ncRNA
195746	chr6	39922851	39923350	+	0	NA	intron (NM_001358530, intron 3 of 10)	intron (NM_001358530, intron 3 of 10)	4616	NM_005943	4337		NM_005942	ENSG00000124615	MOCS1	MIG11|MOCOD|MOCS1A|MOCS1B	molybdenum cofactor synthesis 1	protein-coding
96198	chr17	39753201	39755220	+	0	NA	Intergenic	CpG	14243	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
208185	chr7	64889921	64891050	+	0	NA	intron (NM_001385649, intron 1 of 5)	intron (NM_001385649, intron 1 of 5)	7972	NM_001385645	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
183576	chr5	80164871	80165030	+	0	NA	intron (NM_001174072, intron 7 of 11)	FLAM_C|SINE|Alu	-81285	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
174966	chr4	49513471	49513830	+	0	NA	Intergenic	ACRO1|Satellite|acro	527008	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
134234	chr2	134929501	134929900	+	0	NA	intron (NR_135468, intron 2 of 9)	AluSz|SINE|Alu	10878	NM_001320749	905		NM_001241	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
27656	chr10	33025001	33025600	+	0	NA	Intergenic	L2c|LINE|L2	-67070	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
58018	chr12	124391551	124392650	+	0	NA	intron (NM_001077261, intron 18 of 47)	intron (NM_001077261, intron 18 of 47)	-54858	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
35694	chr11	1917471	1919250	+	0	NA	Intergenic	Intergenic	-1343	NM_001042781	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
162936	chr3	49471901	49472800	+	0	NA	intron (NM_001177634, intron 2 of 5)	intron (NM_001177634, intron 2 of 5)	2083	NM_004393	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
177919	chr4	131724701	131725250	+	0	NA	Intergenic	SST1|Satellite|centr	-39863	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
96405	chr17	40146871	40147030	+	0	NA	intron (NM_007359, intron 3 of 13)	Tigger5b|DNA|TcMar-Tigger	6413	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
96891	chr17	42115421	42115680	+	0	NA	intron (NM_001376227, intron 12 of 17)	intron (NM_001376227, intron 12 of 17)	-2836	NM_024119	79132		NM_024119	ENSG00000108771	DHX58	D11LGP2|D11lgp2e|LGP2|RLR-3	DExH-box helicase 58	protein-coding
72745	chr15	39582651	39582950	+	0	NA	intron (NM_003246, intron 3 of 21)	intron (NM_003246, intron 3 of 21)	1721	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
204932	chr7	6242951	6243050	+	0	NA	intron (NM_004227, intron 1 of 12)	intron (NM_004227, intron 1 of 12)	29624	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
143478	chr20	31061451	31061750	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-196064	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
212311	chr7	127107701	127107900	+	0	NA	intron (NM_001371087, intron 1 of 9)	intron (NM_001371087, intron 1 of 9)	-49616	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
125043	chr2	9606751	9607150	+	0	NA	intron (NM_006826, intron 2 of 5)	AluSg|SINE|Alu	24047	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
30146	chr10	74127021	74127500	+	0	NA	intron (NM_207012, intron 7 of 9)	intron (NM_207012, intron 7 of 9)	23568	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
116572	chr19	18241471	18241830	+	0	NA	intron (NM_000923, intron 1 of 15)	AluJo|SINE|Alu	6550	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
7825	chr1	36302401	36303230	+	0	NA	intron (NM_001321471, intron 12 of 12)	intron (NM_001321471, intron 12 of 12)	-3553	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
124445	chr19	58503871	58504330	+	0	NA	intron (NM_001321196, intron 3 of 9)	AluSz6|SINE|Alu	7892	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
24326	chr1	237789701	237789900	+	0	NA	intron (NM_001035, intron 92 of 104)	intron (NM_001035, intron 92 of 104)	-72375	NR_027247	100130331		NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
201115	chr6	142867971	142868430	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	76976	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
225324	chr9	34614571	34614730	+	0	NA	intron (NM_024348, intron 5 of 6)	intron (NM_024348, intron 5 of 6)	-2553	NM_148179	138716		NM_148178	ENSG00000164967	RPP25L	C9orf23|bA296L22.5	ribonuclease P/MRP subunit p25 like	protein-coding
40124	chr11	62826201	62826600	+	0	NA	intron (NM_001244666, intron 5 of 10)	AluSp|SINE|Alu	5651	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
95740	chr17	38590951	38591480	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	14737	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
73600	chr15	44549071	44549430	+	0	NA	intron (NM_001284336, intron 2 of 5)	AluSp|SINE|Alu	12103	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
55863	chr12	109389171	109389450	+	0	NA	intron (NM_001101421, intron 1 of 30)	MLT1K|LTR|ERVL-MaLR	591	NM_001101421	283446		NM_173597	ENSG00000174527	MYO1H	CCHS2	myosin IH	protein-coding
165999	chr3	108128751	108129330	+	0	NA	intron (NR_110028, intron 1 of 2)	ERV3-16A3_LTR|LTR|ERVL	3219	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
211364	chr7	104994401	104994800	+	0	NA	Intergenic	Intergenic	-3435	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
14662	chr1	145767021	145767280	+	0	NA	intron (NM_014455, intron 4 of 8)	SVA_D|Retroposon|SVA	47651	NM_007053	11126		NM_007053	ENSG00000117281	CD160	BY55|NK1|NK28	CD160 molecule	protein-coding
13812	chr1	117612821	117613480	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	7102	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
69106	chr14	92443651	92443750	+	0	NA	intron (NM_153647, intron 8 of 17)	intron (NM_153647, intron 8 of 17)	-70081	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
97652	chr17	44203671	44204530	+	0	NA	TTS (NM_014233)	TTS (NM_014233)	3739	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
179829	chr5	469201	470000	+	0	NA	TTS (NM_004174)	TTS (NM_004174)	3365	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
134380	chr2	136322251	136322800	+	0	NA	Intergenic	Intergenic	-204376	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
133653	chr2	127052471	127053050	+	0	NA	intron (NM_139345, intron 11 of 15)	intron (NM_139345, intron 11 of 15)	29305	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
217860	chr8	37826371	37827080	+	0	NA	intron (NM_032777, intron 2 of 18)	intron (NM_032777, intron 2 of 18)	23136	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
74411	chr15	58981501	58982190	+	0	NA	Intergenic	Intergenic	-5818	NM_001270528	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
200880	chr6	138955401	138955600	+	0	NA	intron (NM_031922, intron 1 of 19)	intron (NM_031922, intron 1 of 19)	32753	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
191424	chr6	10421371	10421730	+	0	NA	Intergenic	Intergenic	-1490	NM_001042425	7020		NM_003220	ENSG00000137203	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha	protein-coding
62629	chr13	100698401	100698600	+	0	NA	Intergenic	L1PA2|LINE|L1	-9825	NR_047687	100885778		NR_047687	ENSG00000233009	NALCN-AS1	-	NALCN antisense RNA 1	ncRNA
116465	chr19	18091021	18091950	+	0	NA	intron (NM_001290024, intron 1 of 17)	intron (NM_001290024, intron 1 of 17)	-4551	NM_153701	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
5390	chr1	25472271	25472930	+	0	NA	intron (NM_018202, intron 6 of 10)	intron (NM_018202, intron 6 of 10)	41703	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
146715	chr20	50587901	50588750	+	0	NA	intron (NM_080829, intron 20 of 21)	intron (NM_080829, intron 20 of 21)	2539	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
68227	chr14	76932101	76932300	+	0	NA	Intergenic	L2c|LINE|L2	-27438	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
94322	chr17	28763621	28764830	+	0	NA	intron (NM_001288631, intron 2 of 3)	AluSx|SINE|Alu	20214	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
78023	chr15	89895451	89895700	+	0	NA	TTS (NM_001282380)	TTS (NM_001282380)	-1581	NR_023361	10239		NM_005829	ENSG00000157823	AP3S2	AP3S3|sigma3b	adaptor related protein complex 3 subunit sigma 2	protein-coding
104039	chr17	80134401	80134550	+	0	NA	3' UTR (NM_014740, exon 12 of 12)	3' UTR (NM_014740, exon 12 of 12)	12653	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
85579	chr16	53489551	53489850	+	0	NA	intron (NM_001323609, intron 20 of 20)	MER105|DNA|hAT-Charlie	13509	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
81571	chr16	9134501	9135300	+	0	NA	Intergenic	Intergenic	43256	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
49916	chr12	39618671	39618900	+	0	NA	exon (NM_005164, exon 1 of 10)	exon (NM_005164, exon 1 of 10)	1018	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
75006	chr15	64002921	64003380	+	0	NA	intron (NM_001385000, intron 2 of 11)	intron (NM_001385000, intron 2 of 11)	43335	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
133903	chr2	130180001	130180400	+	0	NA	intron (NM_017951, intron 1 of 19)	AluY|SINE|Alu	1402	NR_033231	55627		NM_017751	ENSG00000136699	SMPD4	NEDMABA|NEDMEBA|NET13|NSMASE-3|NSMASE3|SKNY	sphingomyelin phosphodiesterase 4	protein-coding
234037	chrX	3873421	3873680	+	0	NA	intron (NR_146581, intron 1 of 3)	intron (NR_146581, intron 1 of 3)	8763	NR_146578	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
84546	chr16	30557301	30559500	+	0	NA	promoter-TSS (NM_033410)	promoter-TSS (NM_033410)	-26	NM_001172679	92595		NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
34221	chr10	129964201	129964800	+	0	NA	promoter-TSS (NM_001005463)	promoter-TSS (NM_001005463)	-226	NM_001375390	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
15524	chr1	150512251	150513150	+	0	NA	intron (NM_022664, intron 7 of 8)	intron (NM_022664, intron 7 of 8)	-3057	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
90465	chr17	1384101	1384650	+	0	NA	intron (NR_024058, intron 1 of 6)	AluJo|SINE|Alu	15847	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
195542	chr6	37441001	37441230	+	0	NA	intron (NM_015050, intron 2 of 23)	intron (NM_015050, intron 2 of 23)	7894	NM_015050	23070		NM_015050	ENSG00000137200	CMTR1	FTSJD2|KIAA0082|MTr1|hMTr1	cap methyltransferase 1	protein-coding
207382	chr7	44124821	44125080	+	0	NA	Intergenic	FRAM|SINE|Alu	-1380	NM_001127218	5425		NM_006230	ENSG00000106628	POLD2	-	DNA polymerase delta 2, accessory subunit	protein-coding
210362	chr7	99586971	99587130	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-11217	NM_001195542	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
114474	chr19	12743721	12744180	+	0	NA	intron (NM_001371488, intron 3 of 7)	AluYe5|SINE|Alu	6453	NM_004317	439		NM_004317	ENSG00000198356	GET3	ARSA-I|ARSA1|ASNA-I|ASNA1|CMD2H|TRC40	guided entry of tail-anchored proteins factor 3, ATPase	protein-coding
77568	chr15	84982501	84983100	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	826	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
4259	chr1	19646371	19647000	+	0	NA	promoter-TSS (NM_001278166)	promoter-TSS (NM_001278166)	919	NM_001204086	4681		NM_005380	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	NBL1, DAN family BMP antagonist	protein-coding
6457	chr1	28259001	28260800	+	0	NA	exon (NM_031459, exon 1 of 10)	exon (NM_031459, exon 1 of 10)	382	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
38185	chr11	36364201	36364400	+	0	NA	intron (NM_001160167, intron 1 of 8)	intron (NM_001160167, intron 1 of 8)	-11685	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
25540	chr10	7406621	7407180	+	0	NA	intron (NM_001029880, intron 1 of 20)	intron (NM_001029880, intron 1 of 20)	2441	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
183772	chr5	81779971	81780330	+	0	NA	Intergenic	Intergenic	-28897	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
190422	chr5	179829871	179830100	+	0	NA	intron (NM_003900, intron 5 of 7).2	AluJb|SINE|Alu	9080	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
90490	chr17	1428121	1428380	+	0	NA	intron (NM_005206, intron 2 of 2)	AluSq2|SINE|Alu	27982	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
27899	chr10	41887021	41887350	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	480860	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
10673	chr1	71055251	71056030	+	0	NA	intron (NR_038420, intron 2 of 2)	AluSc8|SINE|Alu	-7824	NM_001126044	5733		NM_000957	ENSG00000050628	PTGER3	EP3|EP3-I|EP3-II|EP3-III|EP3-IV|EP3-VI|EP3e|PGE2-R|lnc003875	prostaglandin E receptor 3	protein-coding
17037	chr1	156075651	156076050	+	0	NA	3' UTR (NM_001093725, exon 2 of 2)	3' UTR (NM_001093725, exon 2 of 2)	6615	NM_001093725	92312		NM_001093725	ENSG00000254726	MEX3A	MEX-3A|RKHD4|RNF162	mex-3 RNA binding family member A	protein-coding
32048	chr10	101046451	101047150	+	0	NA	Intergenic	Intergenic	-15189	NR_135067	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
84308	chr16	30095611	30097650	+	0	NA	promoter-TSS (NM_001145524)	promoter-TSS (NM_001145524)	200	NR_135192	101928595		NR_135192	ENSG00000250616	YPEL3-DT	-	YPEL3 divergent transcript	ncRNA
167505	chr3	129226301	129226700	+	0	NA	Intergenic	MamRep4096|DNA|hAT-Tip100	-23106	NM_016128	22820		NM_016128	ENSG00000181789	COPG1	COPG	COPI coat complex subunit gamma 1	protein-coding
71145	chr14	105003651	105003850	+	0	NA	Intergenic	AluY|SINE|Alu	17333	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
4488	chr1	21632001	21632400	+	0	NA	intron (NM_001350524, intron 4 of 27)	intron (NM_001350524, intron 4 of 27)	19698	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
205692	chr7	23234651	23234950	+	0	NA	Intergenic	L2b|LINE|L2	-11975	NM_002510	10457		NM_002510	ENSG00000136235	GPNMB	HGFIN|NMB|PLCA3	glycoprotein nmb	protein-coding
116776	chr19	18505071	18505580	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	16745	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
77739	chr15	85741771	85741930	+	0	NA	intron (NM_007200, intron 35 of 36)	AluSq|SINE|Alu	16875	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
9943	chr1	54547721	54548230	+	0	NA	promoter-TSS (NM_147161)	promoter-TSS (NM_147161)	-253	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
43019	chr11	73994821	73995600	+	0	NA	Intergenic	Intergenic	-12008	NM_001381944	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
213180	chr7	132453921	132454550	+	0	NA	intron (NM_001105543, intron 3 of 3)	MIRb|SINE|MIR	122235	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
33087	chr10	110904521	110904900	+	0	NA	intron (NM_001243783, intron 1 of 2)	L1ME3G|LINE|L1	6620	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
52533	chr12	56117501	56118960	+	0	NA	promoter-TSS (NM_001303125)	promoter-TSS (NM_001303125)	-36	NM_032786	84872		NM_032786	ENSG00000135482	ZC3H10	ZC3HDC10	zinc finger CCCH-type containing 10	protein-coding
93654	chr17	19191501	19191700	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1355	NR_006881	780853		NR_006881		SNORD3C	RNU3-3|U3-3	small nucleolar RNA, C/D box 3C	snoRNA
113686	chr19	10402171	10402620	+	0	NA	intron (NM_007065, intron 1 of 7)	intron (NM_007065, intron 1 of 7)	1143	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
139849	chr2	230472171	230472330	+	0	NA	intron (NM_001080391, intron 15 of 28)	AluY|SINE|Alu	55494	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
209847	chr7	90178871	90179180	+	0	NA	intron (NR_110029, intron 2 of 2)	intron (NR_110029, intron 2 of 2)	24556	NM_012449	26872		NM_012449	ENSG00000164647	STEAP1	PRSS24|STEAP	STEAP family member 1	protein-coding
155553	chr22	38720871	38721200	+	0	NA	intron (NM_004286, intron 4 of 11)	AluJb|SINE|Alu	15091	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
224205	chr9	5511771	5512130	+	0	NA	intron (NM_025239, intron 1 of 6)	L2b|LINE|L2	1419	NM_025239	80380		NM_025239	ENSG00000197646	PDCD1LG2	B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2	programmed cell death 1 ligand 2	protein-coding
17814	chr1	159853701	159853900	+	0	NA	TTS (NM_001013661)	TTS (NM_001013661)	1237	NR_147124	284677		NM_001134233	ENSG00000188004	SNHG28	C1orf204|VSIG8-OT1	small nucleolar RNA host gene 28	ncRNA
181547	chr5	43105421	43106300	+	0	NA	Intergenic	Intergenic	-15054	NM_001330704	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
172669	chr4	2731451	2731550	+	0	NA	intron (NM_001256668, intron 19 of 19)	LTR56|LTR|ERV1	24836	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
85320	chr16	49876701	49876930	+	0	NA	Intergenic	CpG	-18896	NM_001271620	23090		NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
51505	chr12	52147421	52148080	+	0	NA	Intergenic	Intergenic	44264	NM_001081492	144501		NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
1144	chr1	2174021	2174730	+	0	NA	intron (NR_146911, intron 11 of 15)	intron (NR_146911, intron 11 of 15)	9500	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
227364	chr9	89486551	89487000	+	0	NA	intron (NM_001371194, intron 1 of 15)	AluJr|SINE|Alu	-6885	NR_163884	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
164639	chr3	66477951	66478250	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	21954	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
186682	chr5	138656901	138657300	+	0	NA	Intergenic	Intergenic	-81699	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
194730	chr6	33851751	33852450	+	0	NA	Intergenic	Intergenic	44807	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
84742	chr16	30951471	30951630	+	0	NA	intron (NM_152288, intron 1 of 1)	MER102b|DNA|hAT-Charlie	2482	NM_152288	93129		NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
156328	chr22	40654501	40655100	+	0	NA	Intergenic	Intergenic	-18081	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
57440	chr12	121898371	121898730	+	0	NA	intron (NR_048555, intron 2 of 4)	AluSc|SINE|Alu	9760	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
76531	chr15	75124351	75124450	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-77482	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
221860	chr8	128298521	128298980	+	0	NA	Intergenic	MIR|SINE|MIR	148634	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
24113	chr1	235644201	235644680	+	0	NA	intron (NM_001098721, intron 1 of 3)	intron (NM_001098721, intron 1 of 3)	5344	NM_001098722	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
172580	chr4	2472321	2472850	+	0	NA	intron (NM_001185009, intron 2 of 8)	FLAM_C|SINE|Alu	3132	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
137930	chr2	201080571	201080730	+	0	NA	intron (NM_001257102, intron 3 of 3)	L1M5|LINE|L1	8649	NM_002491	4709		NM_002491	ENSG00000119013	NDUFB3	B12|CI-B12|MC1DN25	NADH:ubiquinone oxidoreductase subunit B3	protein-coding
193250	chr6	29944001	29944870	+	0	NA	intron (NM_001242758, intron 4 of 7)	intron (NM_001242758, intron 4 of 7)	1903	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
215820	chr8	6411821	6412080	+	0	NA	intron (NR_136159, intron 2 of 6)	intron (NR_136159, intron 2 of 6)	4797	NM_001322045	79648		NM_024596	ENSG00000147316	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
123157	chr19	52195671	52195830	+	0	NA	intron (NR_033500, intron 1 of 13)	MER21B|LTR|ERVL	-5446	NM_001363656	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
209525	chr7	77064551	77064850	+	0	NA	Intergenic	AluJb|SINE|Alu	-3819	NM_001351348	100505767		NM_001351348	ENSG00000205482	SPDYE18	-	speedy/RINGO cell cycle regulator family member E18	protein-coding
91564	chr17	5111271	5112530	+	0	NA	promoter-TSS (NR_135658)	promoter-TSS (NR_135658)	-35	NR_135658	101928000		NR_135657	ENSG00000234327	ZNF232-AS1	-	ZNF232 antisense RNA 1	ncRNA
110963	chr19	2946921	2947180	+	0	NA	Intergenic	L1MC5|LINE|L1	-2079	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
167164	chr3	128069851	128069950	+	0	NA	3' UTR (NM_013336, exon 12 of 12)	3' UTR (NM_013336, exon 12 of 12)	-5910	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
107983	chr18	58629021	58629550	+	0	NA	promoter-TSS (NM_052947)	promoter-TSS (NM_052947)	-194	NM_052947	115701		NM_052947	ENSG00000198796	ALPK2	HAK	alpha kinase 2	protein-coding
165977	chr3	108074171	108074330	+	0	NA	intron (NM_198793, intron 2 of 8)	intron (NM_198793, intron 2 of 8)	16781	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
170665	chr3	187616271	187616530	+	0	NA	Intergenic	Intergenic	53994	NM_001048	6750		NM_001048	ENSG00000157005	SST	SMST|SST1	somatostatin	protein-coding
144324	chr20	34917821	34918430	+	0	NA	intron (NM_001076552, intron 8 of 18)	intron (NM_001076552, intron 8 of 18)	37510	NM_001322495	2937		NM_000178	ENSG00000100983	GSS	GSHS|HEL-S-64p|HEL-S-88n	glutathione synthetase	protein-coding
89921	chr16	89717301	89717880	+	0	NA	non-coding (NR_036480, exon 4 of 4)	non-coding (NR_036480, exon 4 of 4)	-2778	NR_110128	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
107212	chr18	36132671	36133230	+	0	NA	intron (NM_001324468, intron 1 of 20)	intron (NM_001324468, intron 1 of 20)	3051	NM_001242879	55250		NM_018255	ENSG00000134759	ELP2	MRT58|SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
181825	chr5	52799421	52801080	+	0	NA	5' UTR (NM_015946, exon 2 of 3)	5' UTR (NM_015946, exon 2 of 3)	12334	NM_015946	53918		NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota mRNA surveillance and ribosome rescue factor	protein-coding
48233	chr12	8236251	8236680	+	0	NA	intron (NR_120454, intron 1 of 2)	AluSq2|SINE|Alu	1050	NR_120454	101927905		NR_120454	ENSG00000215241	LINC02449	-	long intergenic non-protein coding RNA 2449	ncRNA
37259	chr11	14648771	14649130	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	5146	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
62321	chr13	99051801	99052650	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	34469	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
237914	chrX	131854651	131854750	+	0	NA	Intergenic	L1MC4|LINE|L1	-24057	NR_026975	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
142544	chr20	5114951	5115050	+	0	NA	TTS (NM_002592)	TTS (NM_002592)	-1913	NM_001330986	29058		NM_014145	ENSG00000089063	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
143795	chr20	32455571	32455930	+	0	NA	intron (NM_080616, intron 3 of 7)	intron (NM_080616, intron 3 of 7)	27740	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
191209	chr6	5520751	5520850	+	0	NA	intron (NM_001374875, intron 4 of 6)	intron (NM_001374875, intron 4 of 6)	-62725	NR_125848	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
153465	chr22	25401801	25403300	+	0	NA	intron (NM_001135772, intron 1 of 6)	MIR|SINE|MIR	2858	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
177852	chr4	128060551	128062880	+	0	NA	intron (NM_178043, intron 1 of 10)	CpG	403	NM_032239	55132		NM_018078	ENSG00000138709	LARP1B	LARP2	La ribonucleoprotein 1B	protein-coding
234128	chrX	9873971	9874230	+	0	NA	intron (NM_001649, intron 2 of 9)	intron (NM_001649, intron 2 of 9)	-38272	NM_001320664	357		NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
185753	chr5	132208401	132208550	+	0	NA	intron (NM_001017974, intron 7 of 14)	intron (NM_001017974, intron 7 of 14)	9443	NR_106888	102465498		NR_106888	ENSG00000283678	MIR6830	hsa-mir-6830	microRNA 6830	ncRNA
151747	chr22	17787651	17788700	+	0	NA	3' UTR (NM_015241, exon 32 of 32)	3' UTR (NM_015241, exon 32 of 32)	10885	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
44803	chr11	113796601	113796990	+	0	NA	Intergenic	Intergenic	16999	NM_001101389	644672		NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
22164	chr1	212232251	212232350	+	0	NA	intron (NR_125984, intron 2 of 3)	MLT2A2|LTR|ERVL	2436	NR_125983	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
67999	chr14	74956451	74956750	+	0	NA	promoter-TSS (NM_001293643)	promoter-TSS (NM_001293643)	-836	NM_001207012	5228		NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
185904	chr5	132779251	132779550	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-1531	NM_001098813	23176		NM_015146	ENSG00000164402	SEPTIN8	SEP2|SEPT8|Septin-8	septin 8	protein-coding
120490	chr19	44758171	44758580	+	0	NA	promoter-TSS (NR_107052)	promoter-TSS (NR_107052)	-282	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
122516	chr19	49613301	49613600	+	0	NA	intron (NM_020719, intron 6 of 13)	L2c|LINE|L2	22268	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
164701	chr3	67664401	67664600	+	0	NA	intron (NR_109992, intron 1 of 6)	intron (NR_109992, intron 1 of 6)	9803	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
5829	chr1	26696701	26697700	+	0	NA	exon (NM_006015, exon 1 of 20)	exon (NM_006015, exon 1 of 20)	1185	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
175638	chr4	76304621	76305380	+	0	NA	intron (NM_001242939, intron 6 of 6)	L2a|LINE|L2	-1026	NM_003943	8987		NM_003943	ENSG00000118804	STBD1	GENEX3414|GENX-3414	starch binding domain 1	protein-coding
122831	chr19	50419051	50419630	+	0	NA	intron (NM_003121, intron 1 of 5)	intron (NM_003121, intron 1 of 5)	402	NM_001243999	6689		NM_003121	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor	protein-coding
108832	chr18	79067371	79067920	+	0	NA	Intergenic	Intergenic	-1749	NM_001306085	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
50404	chr12	47349721	47350430	+	0	NA	Intergenic	Intergenic	14194	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
13958	chr1	120359821	120360930	+	0	NA	Intergenic	Intergenic	-54652	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
66582	chr14	63483971	63484850	+	0	NA	intron (NM_006246, intron 2 of 13)	intron (NM_006246, intron 2 of 13)	23828	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
31394	chr10	95236151	95236450	+	0	NA	Intergenic	Intergenic	42100	NM_207321	142827		NM_207321	ENSG00000173124	ACSM6	C10orf129|bA310E22.3	acyl-CoA synthetase medium chain family member 6	protein-coding
170801	chr3	189137421	189137880	+	0	NA	Intergenic	Intergenic	-34321	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
119246	chr19	39482751	39483450	+	0	NA	intron (NM_001329559, intron 3 of 9)	intron (NM_001329559, intron 3 of 9)	2262	NM_001001563	92609		NM_001001563	ENSG00000105197	TIMM50	MGCA9|TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
185654	chr5	131550701	131551000	+	0	NA	intron (NM_016340, intron 5 of 27)	L2c|LINE|L2	84379	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
66318	chr14	61416571	61417500	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	95592	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
158649	chr3	5004821	5005350	+	0	NA	Intergenic	L2b|LINE|L2	-25124	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
15216	chr1	149436571	149436730	+	0	NA	intron (NM_001364012, intron 2 of 4)	intron (NM_001364012, intron 2 of 4)	-39248	NM_001351365	101060226		NM_001351365	ENSG00000271383	NBPF19	-	NBPF member 19	protein-coding
70642	chr14	102916501	102916930	+	0	NA	Intergenic	Intergenic	-5948	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
114102	chr19	11123971	11124330	+	0	NA	intron (NM_001195800, intron 13 of 15)	AluSx1|SINE|Alu	10676	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
46872	chr11	133951421	133951680	+	0	NA	intron (NM_001277285, intron 1 of 19)	intron (NM_001277285, intron 1 of 19)	5418	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
228706	chr9	109013001	109014800	+	0	NA	promoter-TSS (NM_003798)	promoter-TSS (NM_003798)	-401	NM_003798	8727		NM_003798	ENSG00000119326	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin alpha like 1	protein-coding
153572	chr22	26665021	26666080	+	0	NA	non-coding (NR_003491, exon 3 of 5)	non-coding (NR_003491, exon 3 of 5)	-7293	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
59279	chr13	24230271	24231600	+	0	NA	intron (NM_001166271, intron 2 of 12)	intron (NM_001166271, intron 2 of 12)	23504	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
81737	chr16	11346971	11347430	+	0	NA	intron (NM_152308, intron 1 of 1)	intron (NM_152308, intron 1 of 1)	1741	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
120761	chr19	45421251	45421630	+	0	NA	intron (NM_001369409, intron 2 of 8)	intron (NM_001369409, intron 2 of 8)	2088	NM_001369416	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
92853	chr17	16298251	16298550	+	0	NA	intron (NM_004278, intron 2 of 6)	intron (NM_004278, intron 2 of 6)	16386	NR_031698	100302124		NR_031698	ENSG00000221355	MIR1288	MIRN1288|hsa-mir-1288	microRNA 1288	ncRNA
93333	chr17	18197601	18197800	+	0	NA	intron (NM_017758, intron 2 of 3)	intron (NM_017758, intron 2 of 3)	13872	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
122337	chr19	49164671	49165030	+	0	NA	intron (NM_001321285, intron 2 of 19)	AluJb|SINE|Alu	7058	NM_001321283	54795		NM_017636	ENSG00000130529	TRPM4	EKVP6|LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
133115	chr2	112651571	112652250	+	0	NA	intron (NM_005415, intron 4 of 10)	L2a|LINE|L2	5971	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
87345	chr16	70344951	70345500	+	0	NA	intron (NR_039997, intron 1 of 4)	AluJb|SINE|Alu	1522	NR_039997	100506083		NR_039997	ENSG00000261777	DDX19A-DT	-	DDX19A divergent transcript	ncRNA
174809	chr4	48127551	48128450	+	0	NA	intron (NM_003328, intron 1 of 14)	intron (NM_003328, intron 1 of 14)	6250	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
111512	chr19	3991851	3992150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6537	NM_001961	1938		NM_001961	ENSG00000167658	EEF2	EEF-2|EF-2|EF2|SCA26	eukaryotic translation elongation factor 2	protein-coding
151592	chr21	46667001	46667480	+	0	NA	Intergenic	Intergenic	31566	NM_001242866	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
206175	chr7	28119071	28119630	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-61107	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
63036	chr13	112965371	112965800	+	0	NA	Intergenic	Intergenic	3053	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
124769	chr2	7059151	7059650	+	0	NA	intron (NM_001349181, intron 8 of 9)	intron (NM_001349181, intron 8 of 9)	18480	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
36571	chr11	6654911	6656380	+	0	NA	5' UTR (NM_003737, exon 1 of 21)	5' UTR (NM_003737, exon 1 of 21)	164	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
198161	chr6	94203471	94203850	+	0	NA	Intergenic	L1HS|LINE|L1	485357	NR_152795	643432		NR_015362		TSG1	-	tumor suppressor TSG1	ncRNA
190600	chr5	181162801	181163100	+	0	NA	Intergenic	AluJb|SINE|Alu	8007	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
85090	chr16	33128471	33128830	+	0	NA	Intergenic	AluYm1|SINE|Alu	-65612	NM_016212	24150		NM_015369	ENSG00000183632	TP53TG3	P53TG3|TP53TG3A|TP53TG3E|TP53TG3F	TP53 target 3	protein-coding
112057	chr19	5147871	5148400	+	0	NA	intron (NM_015015, intron 21 of 22)	CpG	179022	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
909	chr1	1691321	1691650	+	0	NA	intron (NM_001290264, intron 1 of 9)	intron (NM_001290264, intron 1 of 9)	1310	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
127716	chr2	43389421	43389680	+	0	NA	intron (NM_022065, intron 29 of 37)	intron (NM_022065, intron 29 of 37)	162339	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
55373	chr12	104297901	104298100	+	0	NA	intron (NM_001261446, intron 2 of 13)	intron (NM_001261446, intron 2 of 13)	-5739	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
118582	chr19	36304551	36304850	+	0	NA	Intergenic	SST1|Satellite|centr	-6643	NR_029389	100134317		NR_029389		LOC100134317	-	uncharacterized LOC100134317	ncRNA
222080	chr8	130351671	130351830	+	0	NA	intron (NM_001362924, intron 3 of 30)	MSTB|LTR|ERVL-MaLR	-55217	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
59759	chr13	30114201	30115630	+	0	NA	Intergenic	CpG	-6040	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
147643	chr20	62185301	62185700	+	0	NA	intron (NR_169202, intron 1 of 4)	AluSz6|SINE|Alu	2472	NR_169200	26164		NM_015666	ENSG00000101181	MTG2	GTPBP5|ObgH1|dJ1005F21.2	mitochondrial ribosome associated GTPase 2	protein-coding
83696	chr16	28450251	28450550	+	0	NA	Intergenic	AluSx|SINE|Alu	-23946	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
53944	chr12	71841351	71841450	+	0	NA	intron (NR_027449, intron 1 of 15)	intron (NR_027449, intron 1 of 15)	1641	NM_022771	64786		NM_022771	ENSG00000121749	TBC1D15	RAB7-GAP	TBC1 domain family member 15	protein-coding
160709	chr3	32403121	32403780	+	0	NA	intron (NM_138410, intron 1 of 4)	AluJb|SINE|Alu	11597	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
65630	chr14	52301651	52302150	+	0	NA	Intergenic	L1MC5a|LINE|L1	-12412	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
197013	chr6	53322171	53322730	+	0	NA	intron (NM_001242830, intron 1 of 6)	UCON29|DNA|PiggyBac?	15167	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
202628	chr6	158749801	158750200	+	0	NA	intron (NM_001318745, intron 9 of 14)	L1ME3D|LINE|L1	14753	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
138753	chr2	215435771	215436950	+	0	NA	promoter-TSS (NM_212476)	promoter-TSS (NM_212476)	-292	NM_212482	2335		NM_002026	ENSG00000115414	FN1	CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF|SMDCF	fibronectin 1	protein-coding
190950	chr6	2906051	2906350	+	0	NA	Intergenic	Intergenic	-2891	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
139876	chr2	230659331	230659930	+	0	NA	Intergenic	Intergenic	40899	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
170307	chr3	184340751	184341150	+	0	NA	intron (NM_001366133, intron 1 of 4)	intron (NM_001366133, intron 1 of 4)	2117	NM_001366133	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
194398	chr6	33004351	33005330	+	0	NA	3' UTR (NM_002119, exon 5 of 5)	3' UTR (NM_002119, exon 5 of 5)	4751	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
85065	chr16	32084951	32085880	+	0	NA	Intergenic	CpG	102698	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
55425	chr12	104501751	104502050	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	44952	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
201754	chr6	149933251	149933600	+	0	NA	Intergenic	Intergenic	-1088	NR_134598	105378052		NR_134598	ENSG00000293239	LOC105378052	-	uncharacterized LOC105378052	ncRNA
201903	chr6	151325321	151326030	+	0	NA	5' UTR (NM_144497, exon 1 of 3)	5' UTR (NM_144497, exon 1 of 3)	144	NM_144497	9590		NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
13241	chr1	112697771	112697930	+	0	NA	intron (NM_001286072, intron 15 of 21)	intron (NM_001286072, intron 15 of 21)	9206	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
27525	chr10	32310251	32310800	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	36633	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
192184	chr6	17677521	17677980	+	0	NA	intron (NM_001278209, intron 2 of 22)	AluSx3|SINE|Alu	-28380	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
37779	chr11	32343571	32343880	+	0	NA	Intergenic	Intergenic	56675	NM_001367854	7490		NM_000378	ENSG00000184937	WT1	AWT1|GUD|NPHS4|WAGR|WIT-2|WT-1|WT33	WT1 transcription factor	protein-coding
116749	chr19	18477921	18478330	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	-39992	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
166091	chr3	109702301	109702580	+	0	NA	Intergenic	Intergenic	99612	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
138904	chr2	218034571	218035330	+	0	NA	promoter-TSS (NR_034176)	promoter-TSS (NR_034176)	16	NR_034176	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
236358	chrX	70454251	70455360	+	0	NA	promoter-TSS (NM_001166278)	promoter-TSS (NM_001166278)	-291	NM_001166278	1741		NM_020730	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|PPP1R82|SAP102|XLID90|XLMR	discs large MAGUK scaffold protein 3	protein-coding
54165	chr12	76761771	76762750	+	0	NA	Intergenic	AluSp|SINE|Alu	-1855	NM_015336	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
117159	chr19	19329171	19329600	+	0	NA	intron (NM_015329, intron 1 of 18)	intron (NM_015329, intron 1 of 18)	8556	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
129486	chr2	69604801	69605000	+	0	NA	intron (NM_001371577, intron 2 of 14)	L2c|LINE|L2	38838	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
940	chr1	1737451	1738200	+	0	NA	intron (NM_182838, intron 4 of 5)	intron (NM_182838, intron 4 of 5)	8174	NM_182838	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
141775	chr2	242083551	242083650	+	0	NA	intron (NR_146651, intron 1 of 3)	L1PREC2|LINE|L1	538	NR_146651	105373979		NR_146651	ENSG00000232002	LINC01880	-	long intergenic non-protein coding RNA 1880	ncRNA
230443	chr9	128164371	128164830	+	0	NA	TTS (NM_024112)	TTS (NM_024112)	4335	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
201653	chr6	149481801	149483940	+	0	NA	intron (NM_207360, intron 1 of 5)	MIR|SINE|MIR	2144	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
20581	chr1	198745501	198745900	+	0	NA	intron (NM_002838, intron 26 of 32)	L2|LINE|L2	106660	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
205918	chr7	25615701	25615900	+	0	NA	intron (NR_157815, intron 3 of 4)	intron (NR_157815, intron 3 of 4)	47340	NR_157819	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
146154	chr20	48718021	48718350	+	0	NA	intron (NM_020820, intron 5 of 39)	intron (NM_020820, intron 5 of 39)	109814	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
215571	chr7	158821071	158822100	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	7924	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
105070	chr17	82092251	82093350	+	0	NA	exon (NM_004104, exon 7 of 43)	exon (NM_004104, exon 7 of 43)	-2660	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
138654	chr2	212811451	212811750	+	0	NA	intron (NR_131941, intron 2 of 4)	intron (NR_131941, intron 2 of 4)	16269	NR_131941	102725079		NR_131941	ENSG00000234308	LINC01878	-	long intergenic non-protein coding RNA 1878	ncRNA
54190	chr12	79830501	79830830	+	0	NA	intron (NM_001143885, intron 5 of 25)	L1ME4b|LINE|L1	83246	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
235523	chrX	47217421	47219650	+	0	NA	promoter-TSS (NM_006201)	promoter-TSS (NM_006201)	-146	NM_006201	5127		NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
58634	chr12	132504951	132505780	+	0	NA	promoter-TSS (NM_001382742)	promoter-TSS (NM_001382742)	-41	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
200556	chr6	136271951	136272050	+	0	NA	exon (NM_001077440, exon 8 of 12)	exon (NM_001077440, exon 8 of 12)	17846	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
212254	chr7	121528671	121528830	+	0	NA	Intergenic	Intergenic	-132382	NM_001040020	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
147744	chr20	62405301	62405500	+	0	NA	intron (NM_031215, intron 1 of 9)	intron (NM_031215, intron 1 of 9)	1883	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
222201	chr8	133051021	133051380	+	0	NA	intron (NM_001282965, intron 1 of 6)	intron (NM_001282965, intron 1 of 6)	-3759	NR_146773	100302522		NR_146773	ENSG00000287736	PTCSC1	NCRNA00197|PTCSC	papillary thyroid carcinoma susceptibility candidate 1	ncRNA
208202	chr7	65076471	65076830	+	0	NA	Intergenic	Intergenic	6112	NR_145713	109617022		NR_145713	ENSG00000206785	SNORA15B-2	SNORA15C	small nucleolar RNA, H/ACA box 15B-2	snoRNA
93215	chr17	17829971	17830380	+	0	NA	intron (NM_001005291, intron 1 of 19)	MIRb|SINE|MIR	-6545	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
99161	chr17	49368051	49368800	+	0	NA	intron (NR_110883, intron 2 of 4)	(ATAA)n|Simple_repeat|Simple_repeat	-5952	NM_014897	22834		NM_014897	ENSG00000198740	ZNF652	-	zinc finger protein 652	protein-coding
94104	chr17	27807951	27808850	+	0	NA	Intergenic	Intergenic	-7871	NM_000625	4843		NM_000625	ENSG00000007171	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2	protein-coding
31024	chr10	88830771	88831130	+	0	NA	intron (NM_144590, intron 2 of 5)	intron (NM_144590, intron 2 of 5)	20894	NM_144590	118932		NM_144590	ENSG00000152766	ANKRD22	-	ankyrin repeat domain 22	protein-coding
158676	chr3	5161051	5161450	+	0	NA	intron (NM_018184, intron 1 of 6)	intron (NM_018184, intron 1 of 6)	-26457	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
154158	chr22	31282951	31283700	+	0	NA	intron (NM_001135911, intron 4 of 4)	intron (NM_001135911, intron 4 of 4)	9163	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
168883	chr3	152308821	152309430	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	10111	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
127133	chr2	37664621	37664880	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	6892	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
16590	chr1	155031051	155031550	+	0	NA	intron (NM_144622, intron 4 of 14)	intron (NM_144622, intron 4 of 14)	2481	NM_144622	127579		NM_144622	ENSG00000163354	DCST2	SPE42	DC-STAMP domain containing 2	protein-coding
119279	chr19	39557921	39559030	+	0	NA	Intergenic	Intergenic	-18314	NM_153232	163126		NM_153232	ENSG00000176396	EID2	CRI2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
209341	chr7	76257821	76258480	+	0	NA	intron (NM_001291831, intron 3 of 15)	intron (NM_001291831, intron 3 of 15)	-44523	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
165808	chr3	105817151	105817450	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	50291	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
236671	chrX	76427301	76427900	+	0	NA	promoter-TSS (NM_020932)	promoter-TSS (NM_020932)	-110	NM_020932	57692		NM_020932	ENSG00000198934	MAGEE1	DAMAGE|HCA1	MAGE family member E1	protein-coding
40971	chr11	65363501	65363900	+	0	NA	Intergenic	AluSx|SINE|Alu	8949	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
45733	chr11	119112121	119112930	+	0	NA	exon (NM_001290474, exon 9 of 14)	exon (NM_001290474, exon 9 of 14)	5181	NM_014807	9854		NM_014807	ENSG00000172375	C2CD2L	DLNB23|TMEM24	C2CD2 like	protein-coding
99868	chr17	56593321	56594300	+	0	NA	5' UTR (NM_005450, exon 1 of 1)	5' UTR (NM_005450, exon 1 of 1)	111	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
177780	chr4	122826551	122827400	+	0	NA	exon (NM_002006, exon 1 of 3)	exon (NM_002006, exon 1 of 3)	144	NM_001361665	2247		NM_002006	ENSG00000138685	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2	protein-coding
103611	chr17	78728601	78728830	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-4965	NM_001292018	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
160631	chr3	31542771	31543000	+	0	NA	intron (NM_178862, intron 1 of 15)	AluSx1|SINE|Alu	9960	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
161813	chr3	45544281	45545080	+	0	NA	intron (NM_001368263, intron 20 of 20)	MIR|SINE|MIR	-35135	NR_048543	100885795		NR_048543		LARS2-AS1	-	LARS2 antisense RNA 1	ncRNA
16565	chr1	154984271	154984450	+	0	NA	intron (NM_025207, intron 1 of 6)	intron (NM_025207, intron 1 of 6)	1016	NM_001184891	80308		NM_025207	ENSG00000160688	FLAD1	FAD1|FADS|LSMFLAD|PP591	flavin adenine dinucleotide synthetase 1	protein-coding
40302	chr11	63871301	63871500	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	-17137	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
195797	chr6	41039221	41039580	+	0	NA	promoter-TSS (NM_173561)	promoter-TSS (NM_173561)	-179	NM_173561	222643		NM_173561	ENSG00000124602	UNC5CL	MUXA|ZUD	unc-5 family C-terminal like	protein-coding
216623	chr8	22097021	22097800	+	0	NA	intron (NM_022749, intron 3 of 16)	intron (NM_022749, intron 3 of 16)	8256	NR_148727	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
56297	chr12	112402751	112403200	+	0	NA	Intergenic	AluSx1|SINE|Alu	6310	NM_001320139	6128		NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1|eL6	ribosomal protein L6	protein-coding
167932	chr3	136183321	136183780	+	0	NA	intron (NM_018133, intron 1 of 1)	AluJb|SINE|Alu	10918	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
42154	chr11	67730001	67730600	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-49076	NM_001031615	222		NM_000695	ENSG00000132746	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family member B2	protein-coding
159854	chr3	16522901	16523100	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-9301	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
113263	chr19	8510221	8511130	+	0	NA	TTS (NM_032370)	TTS (NM_032370)	3492	NM_032370	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
58353	chr12	131608951	131610130	+	0	NA	Intergenic	L1PB3|LINE|L1	38581	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
101302	chr17	66450371	66450730	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-33696	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
143822	chr20	32482551	32486600	+	0	NA	intron (NM_001256798, intron 4 of 10)	CpG-17623	-1085	NM_001351680	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
233781	chrX	1432921	1433750	+	0	NA	intron (NM_001173473, intron 5 of 12).2	MER21C|LTR|ERVL	19574	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
214426	chr7	149858871	149859030	+	0	NA	intron (NM_001099220, intron 5 of 7)	intron (NM_001099220, intron 5 of 7)	-14014	NM_001367792	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
82631	chr16	19064171	19064330	+	0	NA	TTS (NM_001160364)	TTS (NM_001160364)	3233	NR_119382	102723385		NR_119379	ENSG00000261465	COQ7-DT	-	COQ7 divergent transcript	ncRNA
18716	chr1	167454221	167454500	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	64169	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
48315	chr12	9005201	9006350	+	0	NA	intron (NM_005810, intron 3 of 4)	MER1B|DNA|hAT-Charlie	16150	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
216724	chr8	22422351	22423100	+	0	NA	TTS (NM_001351660)	TTS (NM_001351660)	-18245	NM_001243974	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
181792	chr5	50874551	50874880	+	0	NA	Intergenic	L2c|LINE|L2	95472	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
218048	chr8	38824171	38824330	+	0	NA	intron (NM_001352781, intron 4 of 13)	intron (NM_001352781, intron 4 of 13)	18800	NM_001352802	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
179410	chr4	184229871	184230600	+	0	NA	Intergenic	Intergenic	-12362	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
41046	chr11	65469901	65470100	+	0	NA	Intergenic	AluJo|SINE|Alu	14714	NR_160547	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
145182	chr20	38871601	38871800	+	0	NA	intron (NM_001172735, intron 2 of 9)	G-rich|Low_complexity|Low_complexity	-54717	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
62091	chr13	94598001	94598400	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-2048	NM_001304430	23483		NM_014305	ENSG00000088451	TGDS	CATMANS|SDR2E1|TDPGD	TDP-glucose 4,6-dehydratase	protein-coding
60659	chr13	42989651	42989750	+	0	NA	intron (NM_033255, intron 1 of 10)	AluY|SINE|Alu	2541	NM_033255	94240		NM_033255	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1	protein-coding
44071	chr11	95547921	95548180	+	0	NA	Intergenic	Intergenic	241732	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
162705	chr3	48996901	48997500	+	0	NA	intron (NM_177939, intron 2 of 8)	intron (NM_177939, intron 2 of 8)	6959	NM_177939	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
40748	chr11	64835671	64835830	+	0	NA	intron (NM_017525, intron 14 of 36)	intron (NM_017525, intron 14 of 36)	8903	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
197319	chr6	73129821	73130180	+	0	NA	intron (NM_001160133, intron 10 of 14)	intron (NM_001160133, intron 10 of 14)	13514	NR_046621	100873997		NR_046621	ENSG00000229154	KCNQ5-AS1	-	KCNQ5 antisense RNA 1	ncRNA
124835	chr2	7733801	7734400	+	0	NA	Intergenic	Intergenic	165555	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
36620	chr11	7353151	7353250	+	0	NA	intron (NM_175733, intron 3 of 6)	LTR41|LTR|ERVL	101296	NM_175733	143425		NM_175733	ENSG00000170743	SYT9	-	synaptotagmin 9	protein-coding
5579	chr1	25990201	25991850	+	0	NA	intron (NM_000437, intron 1 of 10)	intron (NM_000437, intron 1 of 10)	7038	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
194366	chr6	32971301	32972800	+	0	NA	5' UTR (NM_005104, exon 2 of 13).3	5' UTR (NM_005104, exon 2 of 13).3	455	NM_001199455	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
164715	chr3	68059401	68059600	+	0	NA	intron (NM_213609, intron 2 of 4)	intron (NM_213609, intron 2 of 4)	55253	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
100255	chr17	59415701	59416100	+	0	NA	Intergenic	Intergenic	49817	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
140077	chr2	231442221	231443380	+	0	NA	Intergenic	AluJo|SINE|Alu	13136	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
155128	chr22	37637851	37638900	+	0	NA	Intergenic	Intergenic	-1294	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
18176	chr1	160805651	160805750	+	0	NA	intron (NM_001261456, intron 2 of 9)	L1PB4|LINE|L1	9526	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
76611	chr15	75442071	75442230	+	0	NA	intron (NM_001145357, intron 1 of 20)	AluSc8|SINE|Alu	9540	NM_015477	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
124381	chr19	58385571	58386150	+	0	NA	TTS (NR_039910)	TTS (NR_039910)	998	NR_039910	100616168		NR_039910	ENSG00000266640	MIR4754	mir-4754	microRNA 4754	ncRNA
42655	chr11	72471121	72471630	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-36691	NM_001258394	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
80477	chr16	2702701	2703400	+	0	NA	intron (NM_018992, intron 5 of 5)	intron (NM_018992, intron 5 of 5)	17174	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
187049	chr5	139925871	139927030	+	0	NA	intron (NM_013981, intron 1 of 9)	intron (NM_013981, intron 1 of 9)	116849	NM_004883	9542		NM_004883	ENSG00000158458	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
233063	chr9	137078971	137079130	+	0	NA	exon (NM_207309, exon 4 of 9)	exon (NM_207309, exon 4 of 9)	1533	NM_207309	91373		NM_207309	ENSG00000197355	UAP1L1	-	UDP-N-acetylglucosamine pyrophosphorylase 1 like 1	protein-coding
139972	chr2	230883151	230883950	+	0	NA	Intergenic	L1ME3F|LINE|L1	-2996	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
121634	chr19	47449571	47450580	+	0	NA	intron (NM_015063, intron 3 of 9)	intron (NM_015063, intron 3 of 9)	21818	NM_015063	6543		NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
57958	chr12	123901071	123901430	+	0	NA	intron (NM_207437, intron 55 of 77)	intron (NM_207437, intron 55 of 77)	70809	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
170815	chr3	189355471	189356330	+	0	NA	Intergenic	Intergenic	-115306	NR_046722	100874027		NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
209274	chr7	75918601	75919330	+	0	NA	intron (NM_001367562, intron 2 of 16)	intron (NM_001367562, intron 2 of 16)	3768	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
16462	chr1	154603501	154604480	+	0	NA	intron (NM_001365046, intron 1 of 15)	intron (NM_001365046, intron 1 of 15)	2263	NM_001193495	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
52613	chr12	56239751	56240050	+	0	NA	3' UTR (NM_173595, exon 28 of 28)	3' UTR (NM_173595, exon 28 of 28)	9183	NM_001135195	283375		NM_173596	ENSG00000139540	SLC39A5	LZT-Hs7|MYP24|ZIP5	solute carrier family 39 member 5	protein-coding
212648	chr7	129501101	129501350	+	0	NA	Intergenic	Intergenic	-1306	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
2402	chr1	9549051	9549350	+	0	NA	intron (NM_032315, intron 1 of 6)	intron (NM_032315, intron 1 of 6)	9735	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
153888	chr22	30287701	30288530	+	0	NA	intron (NM_001037666, intron 2 of 8)	(GAGCAG)n|Simple_repeat|Simple_repeat	1390	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
223919	chr9	503901	505730	+	0	NA	intron (NM_001354332, intron 1 of 11)	CpG	120	NM_015158	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
187192	chr5	140659701	140660200	+	0	NA	intron (NM_006083, intron 14 of 19)	intron (NM_006083, intron 14 of 19)	-4849	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
67493	chr14	70926021	70927280	+	0	NA	intron (NM_014982, intron 1 of 35)	MER20|DNA|hAT-Charlie	19191	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
15398	chr1	150231371	150231780	+	0	NA	intron (NM_001280559, intron 2 of 6)	AluJb|SINE|Alu	3103	NM_001136479	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
138248	chr2	203225421	203225850	+	0	NA	TTS (NM_001114132)	TTS (NM_001114132)	-13383	NR_163981	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
226977	chr9	81710201	81710400	+	0	NA	intron (NR_109772, intron 1 of 3)	SVA_F|Retroposon|SVA	20587	NR_109772	101927502		NR_109772	ENSG00000233926	TLE1-DT	-	TLE1 divergent transcript	ncRNA
66296	chr14	61396301	61396950	+	0	NA	intron (NM_006255, intron 2 of 13)	L2c|LINE|L2	75182	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
111931	chr19	4732371	4733100	+	0	NA	Intergenic	Intergenic	-8893	NR_169285	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
39741	chr11	61818071	61818230	+	0	NA	intron (NM_001281502, intron 1 of 11)	intron (NM_001281502, intron 1 of 11)	-1147	NM_013402	3992		NM_013402	ENSG00000149485	FADS1	D5D|FADS6|FADSD5|LLCDL1|TU12	fatty acid desaturase 1	protein-coding
48488	chr12	9826771	9828030	+	0	NA	promoter-TSS (NM_001366534)	promoter-TSS (NM_001366534)	-81	NR_159361	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
121733	chr19	47723301	47723700	+	0	NA	intron (NM_014601, intron 3 of 5)	AluSc|SINE|Alu	10078	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
239079	chrY	7344551	7344930	+	0	NA	intron (NR_028062, intron 4 of 7)	AluSp|SINE|Alu	70768	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
109077	chr18	79921951	79923280	+	0	NA	intron (NM_001146345, intron 3 of 4)	intron (NM_001146345, intron 3 of 4)	29038	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
149255	chr21	25862501	25862730	+	0	NA	Intergenic	Intergenic	-126961	NM_001320267	522		NM_001685	ENSG00000154723	ATP5PF	ATP5|ATP5A|ATP5J|ATPM|CF6|F6	ATP synthase peripheral stalk subunit F6	protein-coding
215456	chr7	157926841	157927750	+	0	NA	intron (NM_130842, intron 10 of 21)	intron (NM_130842, intron 10 of 21)	72710	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
94605	chr17	29744301	29745280	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	16642	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
72628	chr15	38308151	38309280	+	0	NA	intron (NM_152594, intron 2 of 6)	L1MD2|LINE|L1	55879	NM_152594	161742		NM_152594	ENSG00000166068	SPRED1	LGSS|NFLS|PPP1R147|hSpred1|spred-1	sprouty related EVH1 domain containing 1	protein-coding
113700	chr19	10418711	10420400	+	0	NA	promoter-TSS (NM_001111307)	promoter-TSS (NM_001111307)	-983	NM_001111307	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
60701	chr13	43963671	43963900	+	0	NA	Intergenic	Intergenic	-58550	NR_026955	121838		NR_026955		NRAD1	LINC00284|NCRNA00284	non-coding RNA in the aldehyde dehydrogenase 1A pathway	ncRNA
178110	chr4	140861451	140861630	+	0	NA	3' UTR (NM_020724, exon 7 of 7)	3' UTR (NM_020724, exon 7 of 7)	-105155	NM_015130	23158		NM_015130	ENSG00000109436	TBC1D9	GRAMD9|MDR1	TBC1 domain family member 9	protein-coding
182147	chr5	56327171	56328330	+	0	NA	Intergenic	Intergenic	-94420	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
236727	chrX	78108071	78108530	+	0	NA	intron (NM_000291, intron 1 of 10)	intron (NM_000291, intron 1 of 10)	4052	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
200471	chr6	135161671	135162030	+	0	NA	Intergenic	Intergenic	-19458	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
106729	chr18	23515101	23515300	+	0	NA	intron (NM_013326, intron 5 of 19)	intron (NM_013326, intron 5 of 19)	11689	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
152076	chr22	19732601	19732800	+	0	NA	Intergenic	Intergenic	9161	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
123012	chr19	51097351	51098030	+	0	NA	TTS (NM_145232)	TTS (NM_145232)	10719	NM_145232	90353		NM_145232	ENSG00000142544	CTU1	ATPBD3|NCS6	cytosolic thiouridylase subunit 1	protein-coding
36956	chr11	11170671	11170830	+	0	NA	Intergenic	Intergenic	182500	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
99208	chr17	49557421	49557980	+	0	NA	intron (NR_103773, intron 1 of 2)	L2a|LINE|L2	16364	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
3250	chr1	13813301	13813900	+	0	NA	intron (NM_012231, intron 8 of 9)	MIRc|SINE|MIR	64185	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
191036	chr6	3162371	3163780	+	0	NA	Intergenic	CpG	-5531	NM_001069	7280		NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
129722	chr2	70898571	70898730	+	0	NA	Intergenic	Intergenic	-1926	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
2092	chr1	7960871	7962530	+	0	NA	promoter-TSS (NM_001123377)	promoter-TSS (NM_001123377)	-11	NM_007262	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
7530	chr1	34858521	34860480	+	0	NA	promoter-TSS (NM_001164824)	promoter-TSS (NM_001164824)	249	NM_001164825	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
39978	chr11	62603951	62604300	+	0	NA	exon (NM_001300793, exon 17 of 22)	exon (NM_001300793, exon 17 of 22)	-2260	NM_004739	9219		NM_004739	ENSG00000149480	MTA2	MTA1L1|PID	metastasis associated 1 family member 2	protein-coding
171180	chr3	195669771	195669930	+	0	NA	intron (NR_003265, intron 7 of 14)	intron (NR_003265, intron 7 of 14)	11811	NR_003265	727956		NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	SDHA pseudogene 2	pseudo
24253	chr1	236380151	236380250	+	0	NA	Intergenic	Intergenic	-14086	NM_145861	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
111759	chr19	4379471	4382850	+	0	NA	intron (NM_001199943, intron 1 of 8)	(CT)n|Simple_repeat|Simple_repeat	19387	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
219321	chr8	70152751	70153930	+	0	NA	intron (NM_001321713, intron 10 of 21)	intron (NM_001321713, intron 10 of 21)	-82088	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
30022	chr10	73789121	73789530	+	0	NA	intron (NM_015037, intron 3 of 25)	intron (NM_015037, intron 3 of 25)	3701	NM_015037	23053		NM_015037	ENSG00000214655	ZSWIM8	KIAA0913	zinc finger SWIM-type containing 8	protein-coding
147175	chr20	56462501	56462700	+	0	NA	Intergenic	LTR40a|LTR|ERVL	-5985	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
231348	chr9	130315251	130315350	+	0	NA	intron (NM_001291815, intron 15 of 97)	(CCTCC)n|Simple_repeat|Simple_repeat	49540	NM_001291815	256158		NM_144655	ENSG00000148357	HMCN2	-	hemicentin 2	protein-coding
161286	chr3	39321421	39321880	+	0	NA	Intergenic	AluSq4|SINE|Alu	-8059	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
126238	chr2	27066971	27067550	+	0	NA	intron (NM_021831, intron 11 of 14)	AluJb|SINE|Alu	4394	NM_001134693	100128731		NM_001134693	ENSG00000228474	OST4	-	oligosaccharyltransferase complex subunit 4, non-catalytic	protein-coding
47187	chr12	803451	804050	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSx|SINE|Alu	50827	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
224211	chr9	5569551	5569650	+	0	NA	intron (NM_025239, intron 6 of 6)	LTR33|LTR|ERVL	59069	NM_025239	80380		NM_025239	ENSG00000197646	PDCD1LG2	B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2	programmed cell death 1 ligand 2	protein-coding
37119	chr11	13316471	13316630	+	0	NA	intron (NM_001351815, intron 2 of 17)	intron (NM_001351815, intron 2 of 17)	38760	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
199790	chr6	126338751	126339130	+	0	NA	promoter-TSS (NM_001286525)	promoter-TSS (NM_001286525)	-849	NM_001286524	387103		NM_001012507	ENSG00000203760	CENPW	C6orf173|CENP-W|CUG2	centromere protein W	protein-coding
53814	chr12	69274621	69274950	+	0	NA	TTS (NM_007007)	TTS (NM_007007)	-1567	NR_031692	100302182		NR_031692	ENSG00000283476	MIR1279	MIRN1279|hsa-mir-1279	microRNA 1279	ncRNA
6082	chr1	27235201	27236280	+	0	NA	intron (NM_015023, intron 1 of 15)	intron (NM_015023, intron 1 of 15)	1108	NM_015023	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
97426	chr17	43520551	43520950	+	0	NA	intron (NR_136225, intron 20 of 23)	intron (NR_136225, intron 20 of 23)	9685	NM_001261439	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
167497	chr3	129180371	129180630	+	0	NA	intron (NM_001127196, intron 1 of 4)	intron (NM_001127196, intron 1 of 4)	3396	NM_001127196	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
54664	chr12	93380521	93381330	+	0	NA	intron (NM_001301023, intron 1 of 4)	intron (NM_001301023, intron 1 of 4)	2347	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
196593	chr6	44221051	44222150	+	0	NA	exon (NM_001304462, exon 2 of 14)	exon (NM_001304462, exon 2 of 14)	1985	NM_001304466	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
96223	chr17	39779601	39779950	+	0	NA	intron (NM_001284514, intron 6 of 8)	intron (NM_001284514, intron 6 of 8)	-1550	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
59601	chr13	27635671	27636030	+	0	NA	intron (NM_152705, intron 1 of 2)	MIRb|SINE|MIR	13958	NM_015972	51082		NM_015972	ENSG00000186184	POLR1D	AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2	RNA polymerase I and III subunit D	protein-coding
212960	chr7	130955141	130955980	+	0	NA	intron (NR_109853, intron 4 of 5)	intron (NR_109853, intron 4 of 5)	42096	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
239373	chrY	20827901	20828200	+	0	NA	Intergenic	AluY|SINE|Alu	71942	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
175591	chr4	75670801	75671330	+	0	NA	intron (NM_203505, intron 1 of 11)	intron (NM_203505, intron 1 of 11)	2094	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
132054	chr2	101152571	101153450	+	0	NA	intron (NR_135594, intron 1 of 1)	MIR|SINE|MIR	1350	NR_135594	100506286		NR_135594	ENSG00000272902	TBC1D8-AS1	-	TBC1D8 antisense RNA 1	ncRNA
168216	chr3	141266121	141267530	+	0	NA	intron (NM_001282728, intron 3 of 6)	Tigger15a|DNA|TcMar-Tigger	35000	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
41304	chr11	65876501	65876950	+	0	NA	Intergenic	MIRb|SINE|MIR	-3112	NM_001335	1521		NM_001335	ENSG00000172543	CTSW	LYPN	cathepsin W	protein-coding
55522	chr12	105237371	105237680	+	0	NA	Intergenic	Intergenic	-1295	NM_001251904	55198		NM_018171	ENSG00000136044	APPL2	DIP13B	adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2	protein-coding
206643	chr7	36151571	36151730	+	0	NA	Intergenic	Intergenic	-1604	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
184170	chr5	95779171	95779530	+	0	NA	intron (NM_014899, intron 8 of 11)	intron (NM_014899, intron 8 of 11)	43376	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
141144	chr2	239226801	239227200	+	0	NA	intron (NM_006037, intron 3 of 26)	HAL1|LINE|L1	-31543	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
199461	chr6	117676801	117677150	+	0	NA	intron (NM_138459, intron 1 of 4)	intron (NM_138459, intron 1 of 4)	1506	NM_138459	116150		NM_138459	ENSG00000153989	NUS1	C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding
169699	chr3	172087871	172088230	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	47519	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
13440	chr1	114347471	114347630	+	0	NA	Intergenic	Intergenic	163653	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
58135	chr12	124903051	124903150	+	0	NA	Intergenic	Intergenic	11550	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
221610	chr8	125601471	125602480	+	0	NA	Intergenic	Intergenic	169766	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
102259	chr17	75273271	75273850	+	0	NA	exon (NM_001126122, exon 7 of 7)	exon (NM_001126122, exon 7 of 7)	2261	NR_036520	100287042		NR_036520	ENSG00000263843	MIF4GD-DT	-	MIF4GD divergent transcript	ncRNA
232257	chr9	134406871	134407950	+	0	NA	5' UTR (NM_001291921, exon 1 of 9)	5' UTR (NM_001291921, exon 1 of 9)	850	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
175417	chr4	70971021	70971280	+	0	NA	intron (NM_173468, intron 3 of 5)	intron (NM_173468, intron 3 of 5)	-22499	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
34893	chr11	379301	379500	+	0	NA	intron (NM_178537, intron 14 of 19)	CpG	9901	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
121116	chr19	45974721	45975330	+	0	NA	Intergenic	Intergenic	-1160	NM_002516	4858		NM_002516	ENSG00000104967	NOVA2	ANOVA|NEDASB|NOVA-2|NOVA3	NOVA alternative splicing regulator 2	protein-coding
204446	chr7	3673571	3673750	+	0	NA	intron (NM_152744, intron 4 of 44)	intron (NM_152744, intron 4 of 44)	372408	NM_152744	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
228569	chr9	102486151	102486250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-33437	NR_103830	414319		NR_103830	ENSG00000204250	LINC00587	C9orf107|bA785H23.1	long intergenic non-protein coding RNA 587	ncRNA
233369	chr9	137502151	137503230	+	0	NA	intron (NM_001098537, intron 14 of 34)	(GGGGGACGC)n|Simple_repeat|Simple_repeat	-43356	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
187343	chr5	141677421	141677730	+	0	NA	intron (NM_022481, intron 4 of 32)	L2a|LINE|L2	4655	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
34922	chr11	419601	420300	+	0	NA	intron (NM_001347882, intron 18 of 21)	intron (NM_001347882, intron 18 of 21)	-2553	NM_001135053	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
103367	chr17	78124001	78124900	+	0	NA	intron (NM_001375353, intron 8 of 19)	intron (NM_001375353, intron 8 of 19)	4305	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
118657	chr19	37316721	37318680	+	0	NA	promoter-TSS (NM_001329767)	promoter-TSS (NM_001329767)	-182	NR_138104	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
9605	chr1	52357751	52357850	+	0	NA	exon (NM_001330585, exon 14 of 25)	exon (NM_001330585, exon 14 of 25)	8405	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
190264	chr5	179165951	179166250	+	0	NA	intron (NM_014244, intron 5 of 21)	intron (NM_014244, intron 5 of 21)	105727	NM_014594	30832		NM_014594	ENSG00000177932	ZNF354C	KID3	zinc finger protein 354C	protein-coding
187227	chr5	141187001	141187230	+	0	NA	promoter-TSS (NM_019119)	promoter-TSS (NM_019119)	-46	NM_019119	56127		NM_019119	ENSG00000177839	PCDHB9	PCDH-BETA9|PCDH3H	protocadherin beta 9	protein-coding
70857	chr14	103708871	103709530	+	0	NA	intron (NM_001371232, intron 4 of 9)	intron (NM_001371232, intron 4 of 9)	6251	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
193132	chr6	29016651	29017350	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-11388	NM_001010877	282890		NM_001010877	ENSG00000197935	ZNF311	zf31	zinc finger protein 311	protein-coding
40556	chr11	64330221	64330680	+	0	NA	Intergenic	Intergenic	-9754	NM_032251	283234		NM_032251	ENSG00000168071	CCDC88B	BRLZ|CCDC88|HKRP3|gipie	coiled-coil domain containing 88B	protein-coding
222493	chr8	140456871	140458630	+	0	NA	promoter-TSS (NM_001321646)	promoter-TSS (NM_001321646)	-6	NR_164662	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
27422	chr10	31491051	31491350	+	0	NA	intron (NM_001323675, intron 2 of 6)	L1MD2|LINE|L1	-91445	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
128186	chr2	53859601	53860000	+	0	NA	intron (NM_006794, intron 1 of 1)	CpG	167	NM_006794	10936		NM_006794	ENSG00000119737	GPR75	GPRchr2|WI31133	G protein-coupled receptor 75	protein-coding
15156	chr1	148950401	148950800	+	0	NA	intron (NM_001198834, intron 5 of 43)	MSTA|LTR|ERVL-MaLR	-1524	NM_001002811	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
167836	chr3	133880451	133880750	+	0	NA	intron (NM_016577, intron 1 of 7)	intron (NM_016577, intron 1 of 7)	15247	NM_001363953	51560		NM_016577	ENSG00000154917	RAB6B	-	RAB6B, member RAS oncogene family	protein-coding
144873	chr20	36913671	36913830	+	0	NA	intron (NM_001363733, intron 9 of 15)	intron (NM_001363733, intron 9 of 15)	37612	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
172819	chr4	3070351	3070600	+	0	NA	intron (NR_045414, intron 1 of 2)	AluSx1|SINE|Alu	4039	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
207154	chr7	43586801	43587800	+	0	NA	intron (NM_004760, intron 1 of 6)	AluY|SINE|Alu	4192	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
53037	chr12	57610121	57612900	+	0	NA	promoter-TSS (NM_001347933)	promoter-TSS (NM_001347933)	75	NR_046223	115557		NM_133483	ENSG00000240771	ARHGEF25	GEFT|p63RhoGEF	Rho guanine nucleotide exchange factor 25	protein-coding
228680	chr9	107465651	107465980	+	0	NA	intron (NR_121581, intron 1 of 7)	CpG	770	NR_121581	101928720		NR_121581		LINC01509	PRCAT37	long intergenic non-protein coding RNA 1509	ncRNA
234553	chrX	19725421	19726100	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	-54761	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
32583	chr10	103476301	103476680	+	0	NA	exon (NM_001129742, exon 2 of 3)	exon (NM_001129742, exon 2 of 3)	2750	NM_001129742	119395		NM_182494	ENSG00000183128	CALHM3	FAM26A|bA225H22.7	calcium homeostasis modulator 3	protein-coding
167511	chr3	129249021	129250850	+	0	NA	intron (NM_016128, intron 1 of 23)	MIR3|SINE|MIR	329	NM_016128	22820		NM_016128	ENSG00000181789	COPG1	COPG	COPI coat complex subunit gamma 1	protein-coding
75383	chr15	65735021	65735280	+	0	NA	intron (NM_001376919, intron 7 of 31)	AluSz6|SINE|Alu	-15818	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
118907	chr19	38720671	38721030	+	0	NA	intron (NM_004924, intron 11 of 20)	intron (NM_004924, intron 11 of 20)	23624	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
143926	chr20	32686071	32686230	+	0	NA	Intergenic	Intergenic	-12209	NM_182584	284805		NM_182584	ENSG00000198547	C20orf203	-	chromosome 20 open reading frame 203	protein-coding
206744	chr7	36667151	36667250	+	0	NA	intron (NM_001177506, intron 3 of 21)	MER44B|DNA|TcMar-Tigger	57294	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
162442	chr3	48444801	48445200	+	0	NA	TTS (NM_001329417)	TTS (NM_001329417)	-1710	NM_001271022	84126		NM_032166	ENSG00000164053	ATRIP	-	ATR interacting protein	protein-coding
208028	chr7	55694951	55695450	+	0	NA	intron (NR_003949, intron 2 of 5)	intron (NR_003949, intron 2 of 5)	-5740	NR_027339	360132		NM_182827	ENSG00000291029	FKBP9P1	FKBP9L	FKBP prolyl isomerase 9 pseudogene 1	pseudo
214782	chr7	151116801	151117000	+	0	NA	intron (NM_001350103, intron 2 of 18)	intron (NM_001350103, intron 2 of 18)	2262	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
79938	chr16	1757251	1757850	+	0	NA	intron (NM_001040439, intron 9 of 30)	intron (NM_001040439, intron 9 of 30)	14159	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
152192	chr22	20109021	20109480	+	0	NA	intron (NM_022720, intron 13 of 13)	intron (NM_022720, intron 13 of 13)	5501	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
112112	chr19	5588571	5590050	+	0	NA	intron (NM_014649, intron 18 of 20)	intron (NM_014649, intron 18 of 20)	-21276	NR_027064								
22665	chr1	223777401	223777600	+	0	NA	Intergenic	Intergenic	64961	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
89503	chr16	89157351	89157650	+	0	NA	Intergenic	Intergenic	-1720	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
161663	chr3	43333951	43334250	+	0	NA	intron (NM_017719, intron 4 of 6)	AluSg|SINE|Alu	17862	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
145354	chr20	41146871	41147330	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-9100	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
190786	chr6	683921	684380	+	0	NA	intron (NR_073064, intron 2 of 29)	intron (NR_073064, intron 2 of 29)	8989	NM_018303	55770		NM_018303	ENSG00000112685	EXOC2	NEDFACH|SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
129895	chr2	73204801	73205000	+	0	NA	intron (NM_001134462, intron 1 of 2)	AluY|SINE|Alu	2326	NM_001134462	344022		NM_001134462	ENSG00000214513	NOTO	-	notochord homeobox	protein-coding
73062	chr15	40906021	40906900	+	0	NA	promoter-TSS (NR_135836)	promoter-TSS (NR_135836)	-349	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
160566	chr3	30692251	30692550	+	0	NA	3' UTR (NM_003242, exon 7 of 7)	3' UTR (NM_003242, exon 7 of 7)	85799	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
217917	chr8	37931401	37931600	+	0	NA	Intergenic	Intergenic	8624	NM_152413	137362		NM_152413	ENSG00000169154	GOT1L1	-	glutamic-oxaloacetic transaminase 1 like 1	protein-coding
14000	chr1	120683501	120683700	+	0	NA	Intergenic	MamGypsy2-I|LTR|Gypsy	-18164	NR_144517	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
58514	chr12	132184071	132184230	+	0	NA	Intergenic	AluJr|SINE|Alu	5545	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
103861	chr17	79738721	79739480	+	0	NA	intron (NM_178543, intron 5 of 5)	L2a|LINE|L2	8157	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
184723	chr5	109413101	109413550	+	0	NA	Intergenic	L1M4|LINE|L1	-3351	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
4564	chr1	22052121	22054060	+	0	NA	intron (NM_044472, intron 1 of 5)	CpG	381	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
226808	chr9	77174071	77174780	+	0	NA	Intergenic	L1ME4a|LINE|L1	-3020	NM_015186	23230		NM_015186	ENSG00000197969	VPS13A	BLTP5A|CHAC|CHOREIN	vacuolar protein sorting 13 homolog A	protein-coding
152049	chr22	19598451	19598980	+	0	NA	Intergenic	Intergenic	-31876	NR_024381	150185		NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
22690	chr1	223842801	223843300	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	2897	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
122385	chr19	49409101	49410550	+	0	NA	exon (NM_144688, exon 15 of 20)	exon (NM_144688, exon 15 of 20)	13616	NM_178449	113091		NM_178449	ENSG00000142538	PTH2	TIP39	parathyroid hormone 2	protein-coding
124506	chr19	58606101	58606760	+	0	NA	Intergenic	TAR1|Satellite|telo	31031	NR_026052	65996		NM_023939	ENSG00000293115	CENPBD2P	CENPBD1P1	CENPB DNA-binding domains containing 2, pseudogene	pseudo
162711	chr3	49002621	49002980	+	0	NA	intron (NM_177939, intron 4 of 8)	intron (NM_177939, intron 4 of 8)	-4591	NM_018031	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
64143	chr14	22881671	22881830	+	0	NA	TTS (NM_001329226)	TTS (NM_001329226)	-1472	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
79289	chr16	540671	540830	+	0	NA	intron (NM_005632, intron 3 of 13)	intron (NM_005632, intron 3 of 13)	-2527	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
235158	chrX	41119501	41120150	+	0	NA	intron (NM_001039590, intron 1 of 44)	AluSc8|SINE|Alu	34380	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
50698	chr12	48919801	48920730	+	0	NA	intron (NM_033124, intron 6 of 7)	AluSp|SINE|Alu	4723	NM_001143781	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
49427	chr12	24561921	24562750	+	0	NA	5' UTR (NM_001261414, exon 1 of 17)	5' UTR (NM_001261414, exon 1 of 17)	156	NM_152989	6660		NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box transcription factor 5	protein-coding
95077	chr17	32998321	32998650	+	0	NA	TTS (NM_001317226)	TTS (NM_001317226)	5634	NM_001317225	124912		NM_173847	ENSG00000141316	SPACA3	ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1	sperm acrosome associated 3	protein-coding
99186	chr17	49486151	49486730	+	0	NA	Intergenic	Intergenic	-8853	NM_002507	4804		NM_002507	ENSG00000064300	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
239046	chrY	7254901	7255400	+	0	NA	Intergenic	L1PA2|LINE|L1	-18822	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
120083	chr19	42108571	42109350	+	0	NA	intron (NM_001247994, intron 5 of 13)	L2b|LINE|L2	23486	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
132440	chr2	105841871	105842030	+	0	NA	intron (NM_001004722, intron 2 of 3)	L2a|LINE|L2	-9897	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
178363	chr4	146241701	146242530	+	0	NA	Intergenic	Intergenic	27577	NM_001354631	345051		NM_001354631	ENSG00000250673	REELD1	-	reeler domain containing 1	protein-coding
66485	chr14	61660321	61660980	+	0	NA	Intergenic	Intergenic	-34863	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
103955	chr17	79921001	79921200	+	0	NA	intron (NR_110850, intron 4 of 5)	intron (NR_110850, intron 4 of 5)	1743	NR_110851	101928738		NR_110851	ENSG00000262188	LINC01978	-	long intergenic non-protein coding RNA 1978	ncRNA
191584	chr6	12020001	12020350	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	7863	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
65510	chr14	51896821	51897400	+	0	NA	intron (NM_053064, intron 2 of 3)	L4_C_Mam|LINE|RTE-X	21461	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
42722	chr11	72687701	72688050	+	0	NA	intron (NR_161388, intron 26 of 29)	intron (NR_161388, intron 26 of 29)	-12599	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
161764	chr3	44863451	44863550	+	0	NA	intron (NM_144638, intron 1 of 2)	intron (NM_144638, intron 1 of 2)	1588	NM_144638	131616		NM_144638	ENSG00000169964	TMEM42	-	transmembrane protein 42	protein-coding
219827	chr8	81708601	81709030	+	0	NA	non-coding (NR_033193, exon 6 of 8)	non-coding (NR_033193, exon 6 of 8)	12485	NM_024699	79752		NM_024699	ENSG00000104231	ZFAND1	-	zinc finger AN1-type containing 1	protein-coding
10900	chr1	82930951	82931250	+	0	NA	intron (NR_147074, intron 2 of 10)	intron (NR_147074, intron 2 of 10)	27917	NR_147074	103283057		NR_147074	ENSG00000230817	LINC01362	-	long intergenic non-protein coding RNA 1362	ncRNA
205840	chr7	24898621	24899100	+	0	NA	intron (NM_015550, intron 1 of 22)	L3|LINE|CR1	-6239	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
67075	chr14	68088301	68088700	+	0	NA	intron (NM_133509, intron 7 of 10)	(CTTT)n|Simple_repeat|Simple_repeat	264908	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
37317	chr11	14776051	14776350	+	0	NA	intron (NM_001363570, intron 3 of 16)	L1MDb|LINE|L1	115471	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
47389	chr12	2791851	2792350	+	0	NA	intron (NR_146317, intron 2 of 3)	intron (NR_146317, intron 2 of 3)	-2870	NM_002014	2288		NM_002014	ENSG00000004478	FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	FKBP prolyl isomerase 4	protein-coding
198514	chr6	106518771	106518930	+	0	NA	intron (NM_001371242, intron 3 of 21)	AluJr|SINE|Alu	6995	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
187076	chr5	140173971	140174130	+	0	NA	Intergenic	Intergenic	-1138	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
205375	chr7	14009651	14010250	+	0	NA	Intergenic	AluSz6|SINE|Alu	-18525	NM_001163148	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
103605	chr17	78723751	78723850	+	0	NA	promoter-TSS (NM_001292018)	promoter-TSS (NM_001292018)	-50	NM_001292018	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
157147	chr22	42854701	42854900	+	0	NA	intron (NM_001142293, intron 1 of 14)	intron (NM_001142293, intron 1 of 14)	2473	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
44263	chr11	102111121	102111380	+	0	NA	intron (NM_001130145, intron 1 of 8)	CpG	789	NM_001282100	10413		NM_006106	ENSG00000137693	YAP1	COB1|YAP|YAP-1|YAP2|YAP65|YKI	Yes1 associated transcriptional regulator	protein-coding
15028	chr1	148345551	148346080	+	0	NA	Intergenic	MIR3|SINE|MIR	-11261	NR_049810	100847044		NR_049810	ENSG00000283676	MIR5087	-	microRNA 5087	ncRNA
2439	chr1	9616471	9616630	+	0	NA	Intergenic	AluY|SINE|Alu	27639	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
97648	chr17	44199401	44201430	+	0	NA	promoter-TSS (NM_001382308)	promoter-TSS (NM_001382308)	-531	NM_001382308	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
220219	chr8	96260801	96262000	+	0	NA	promoter-TSS (NM_001290225)	promoter-TSS (NM_001290225)	210	NM_015942	51001		NM_015942	ENSG00000156469	MTERF3	CGI-12|MTERFD1	mitochondrial transcription termination factor 3	protein-coding
184624	chr5	107264701	107264980	+	0	NA	Intergenic	MIR|SINE|MIR	-253826	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
29182	chr10	68954151	68954550	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1820	NM_004728	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
156757	chr22	41838201	41838400	+	0	NA	intron (NR_103834, intron 1 of 21)	L2b|LINE|L2	-3635	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
8958	chr1	44406801	44408080	+	0	NA	intron (NM_001376488, intron 1 of 14)	CpG-1030	648	NM_001376488	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
57241	chr12	121556121	121556380	+	0	NA	intron (NM_001005366, intron 4 of 22)	AluJb|SINE|Alu	23996	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
93155	chr17	17758401	17759400	+	0	NA	TTS (NR_130894)	TTS (NR_130894)	7402	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
146382	chr20	49284521	49284780	+	0	NA	intron (NR_003604, intron 4 of 4)	AluSg4|SINE|Alu	3967	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
186557	chr5	138464701	138466570	+	0	NA	5' UTR (NM_001964, exon 1 of 2)	5' UTR (NM_001964, exon 1 of 2)	156	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
177956	chr4	139016871	139017030	+	0	NA	intron (NM_012118, intron 1 of 2)	AluSg4|SINE|Alu	1169	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
90562	chr17	1511171	1511530	+	0	NA	intron (NM_016532, intron 3 of 11)	intron (NM_016532, intron 3 of 11)	5262	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
219545	chr8	77015171	77015530	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-14306	NM_001172086	5828		NM_000318	ENSG00000164751	PEX2	PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3	peroxisomal biogenesis factor 2	protein-coding
178069	chr4	140071171	140071330	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-56765	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
193964	chr6	31699101	31699300	+	0	NA	intron (NR_033488, intron 4 of 19).5	AluYm1|SINE|Alu	1891	NR_039789	100616230		NR_039789	ENSG00000266776	MIR4646	mir-4646	microRNA 4646	ncRNA
76040	chr15	72227951	72229100	+	0	NA	intron (NM_001206798, intron 1 of 10)	intron (NM_001206798, intron 1 of 10)	1386	NM_001206799	5315		NM_002654	ENSG00000067225	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1|p58	pyruvate kinase M1/2	protein-coding
96706	chr17	41528451	41528750	+	0	NA	promoter-TSS (NM_002276)	promoter-TSS (NM_002276)	-292	NM_002276	3880		NM_002276	ENSG00000171345	KRT19	CK19|K19|K1CS	keratin 19	protein-coding
24773	chr1	248855251	248856080	+	0	NA	intron (NM_017865, intron 7 of 11)	intron (NM_017865, intron 7 of 11)	3420	NM_001350073	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
192352	chr6	24520971	24521150	+	0	NA	intron (NM_170740, intron 7 of 10)	intron (NM_170740, intron 7 of 10)	26091	NM_001368954	7915		NM_001080	ENSG00000112294	ALDH5A1	SSADH|SSDH	aldehyde dehydrogenase 5 family member A1	protein-coding
72446	chr15	31977721	31978230	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	-52508	NR_046324	1139		NM_000746	ENSG00000175344	CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor nicotinic alpha 7 subunit	protein-coding
169970	chr3	179315871	179316700	+	0	NA	Intergenic	Intergenic	-6591	NM_001375806	51193		NM_016331	ENSG00000121864	ZNF639	ANC-2H01|ANC_2H01|ZASC1	zinc finger protein 639	protein-coding
134477	chr2	143253901	143254500	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	124781	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
185248	chr5	123447901	123448100	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-24158	NM_001375408	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
204479	chr7	4741801	4742400	+	0	NA	intron (NM_001037165, intron 2 of 8)	Charlie1a|DNA|hAT-Charlie	-33523	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
177606	chr4	121064651	121064750	+	0	NA	intron (NM_024574, intron 1 of 3)	intron (NM_024574, intron 1 of 3)	7835	NM_024574	79625		NM_024574	ENSG00000173376	NDNF	C4orf31|HH25|NORD	neuron derived neurotrophic factor	protein-coding
140226	chr2	231725201	231725600	+	0	NA	Intergenic	AluSz|SINE|Alu	12086	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
26348	chr10	15262001	15262200	+	0	NA	intron (NM_001010924, intron 3 of 7)	AluJr4|SINE|Alu	-93407	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
222215	chr8	133065901	133066700	+	0	NA	intron (NM_001045557, intron 1 of 7)	AluY|SINE|Alu	-5946	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
82511	chr16	17470101	17472080	+	0	NA	promoter-TSS (NM_022166)	promoter-TSS (NM_022166)	-130	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
133101	chr2	112630501	112632350	+	0	NA	Intergenic	Intergenic	12755	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
51402	chr12	51979971	51980700	+	0	NA	intron (NM_020327, intron 3 of 8)	intron (NM_020327, intron 3 of 8)	-26611	NM_181711	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
199338	chr6	113936101	113936680	+	0	NA	non-coding (NR_033441, exon 15 of 15)	non-coding (NR_033441, exon 15 of 15)	32003	NR_027060	285759		NM_173673	ENSG00000175967	LINC02880	-	long intergenic non-protein coding RNA 2880	ncRNA
42214	chr11	68032821	68033080	+	0	NA	promoter-TSS (NR_106963)	promoter-TSS (NR_106963)	86	NR_106963	102465669		NR_106963	ENSG00000284293	MIR7113	hsa-mir-7113	microRNA 7113	ncRNA
30392	chr10	78197071	78197230	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-51475	NR_038985	100132987		NR_038985	ENSG00000230417	LINC00856	-	long intergenic non-protein coding RNA 856	ncRNA
154523	chr22	36123521	36124400	+	0	NA	Intergenic	Intergenic	36795	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
90291	chr17	1033821	1034280	+	0	NA	intron (NM_001282149, intron 11 of 17).3	AluSx1|SINE|Alu	-2219	NM_001256847	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
38684	chr11	46558371	46558530	+	0	NA	intron (NM_001367471, intron 1 of 18)	AluSg|SINE|Alu	28994	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
20566	chr1	198723101	198723300	+	0	NA	intron (NM_002838, intron 15 of 32)	intron (NM_002838, intron 15 of 32)	84160	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
98057	chr17	45451501	45452450	+	0	NA	TTS (NM_001352825).3	TTS (NM_001352825).3	-19105	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
160598	chr3	31229451	31229750	+	0	NA	Intergenic	AluSc|SINE|Alu	-67813	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
124887	chr2	8376701	8377250	+	0	NA	Intergenic	MIR|SINE|MIR	-48556	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
120389	chr19	43673351	43674050	+	0	NA	Intergenic	AluJo|SINE|Alu	-3354	NM_001005376	5329		NM_002659	ENSG00000011422	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
152227	chr22	20148821	20149850	+	0	NA	intron (NM_001365892, intron 6 of 8)	intron (NM_001365892, intron 6 of 8)	1720	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
214850	chr7	151314821	151315370	+	0	NA	Intergenic	AluSz|SINE|Alu	-26717	NM_001385355	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
63478	chr13	114155141	114155300	+	0	NA	Intergenic	Intergenic	-22597	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
150045	chr21	37374451	37375550	+	0	NA	intron (NM_001347723, intron 1 of 10)	MIRc|SINE|MIR	7443	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
25031	chr10	3741621	3742370	+	0	NA	intron (NR_131187, intron 1 of 1)	LTR8|LTR|ERV1	43214	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
21039	chr1	203036951	203037050	+	0	NA	intron (NM_001304332, intron 1 of 28)	intron (NM_001304332, intron 1 of 28)	10509	NM_001304332	8497		NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding
17944	chr1	160341271	160341530	+	0	NA	intron (NM_001098398, intron 1 of 32)	L1ME3G|LINE|L1	1850	NM_001098398	1314		NM_004371	ENSG00000122218	COPA	AILJK|HEP-COP|alpha-COP	COPI coat complex subunit alpha	protein-coding
26702	chr10	22647501	22647900	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	66408	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
118878	chr19	38674401	38674600	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	26851	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
11897	chr1	93186671	93186830	+	0	NA	intron (NM_206886, intron 4 of 27)	intron (NM_206886, intron 4 of 27)	6026	NM_001378204	343099		NM_206886	ENSG00000122483	CCDC18	NY-SAR-41	coiled-coil domain containing 18	protein-coding
71644	chr14	106771771	106771930	+	0	NA	Intergenic	Intergenic	79149	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
225091	chr9	33403171	33403900	+	0	NA	promoter-TSS (NM_001170)	promoter-TSS (NM_001170)	-853	NM_001318156	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
108936	chr18	79478971	79479130	+	0	NA	intron (NM_001278670, intron 8 of 8)	intron (NM_001278670, intron 8 of 8)	78751	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
152343	chr22	20430501	20432400	+	0	NA	exon (NM_153334, exon 4 of 11)	exon (NM_153334, exon 4 of 11)	6375	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
86528	chr16	67162921	67163970	+	0	NA	promoter-TSS (NM_001538)	promoter-TSS (NM_001538)	-316	NM_001040667	3299		NM_001538	ENSG00000102878	HSF4	CTM|CTRCT5	heat shock transcription factor 4	protein-coding
109226	chr19	491471	492730	+	0	NA	promoter-TSS (NM_001385598)	promoter-TSS (NM_001385598)	-476	NM_001385598	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
69798	chr14	99198051	99198150	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	74097	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
27920	chr10	41904051	41904680	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	463680	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
209618	chr7	77700571	77701180	+	0	NA	intron (NM_198467, intron 1 of 7)	AluSx3|SINE|Alu	-3530	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
90766	chr17	2059951	2060050	+	0	NA	TTS (NM_001098202)	TTS (NM_001098202)	3690	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
157072	chr22	42604151	42604450	+	0	NA	intron (NM_001278657, intron 1 of 8)	intron (NM_001278657, intron 1 of 8)	10583	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
91068	chr17	3034171	3034330	+	0	NA	3' UTR (NM_015085, exon 25 of 25)	3' UTR (NM_015085, exon 25 of 25)	29357	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
55203	chr12	101743821	101744480	+	0	NA	Intergenic	Intergenic	-4678	NM_153694	50511		NM_153694	ENSG00000139351	SYCP3	COR1|RPRGL4|SCP3|SPGF4	synaptonemal complex protein 3	protein-coding
40625	chr11	64704321	64705300	+	0	NA	intron (NM_015080, intron 2 of 22)	Tigger15a|DNA|TcMar-Tigger	18387	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
223780	chr8	144579821	144580080	+	0	NA	intron (NM_001308207, intron 4 of 11)	intron (NM_001308207, intron 4 of 11)	25745	NM_025251	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
112533	chr19	6520121	6521030	+	0	NA	Intergenic	Intergenic	-10451	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
74210	chr15	56185871	56186350	+	0	NA	intron (NM_001370561, intron 4 of 11)	L1ME3Cz|LINE|L1	3822	NM_001370554	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
58226	chr12	128542921	128543180	+	0	NA	intron (NM_001136103, intron 2 of 8)	intron (NM_001136103, intron 2 of 8)	248958	NR_037406	100500817		NR_037406	ENSG00000265635	MIR3612	-	microRNA 3612	ncRNA
120555	chr19	44959351	44959650	+	0	NA	intron (NM_001294, intron 1 of 13)	AluJo|SINE|Alu	4120	NM_001294	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
34420	chr10	132404851	132404950	+	0	NA	exon (NM_001098637, exon 2 of 3)	exon (NM_001098637, exon 2 of 3)	7700	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
137685	chr2	197480451	197481650	+	0	NA	Intergenic	Intergenic	5853	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
47681	chr12	6355571	6355730	+	0	NA	intron (NM_001159575, intron 5 of 12)	intron (NM_001159575, intron 5 of 12)	-13574	NM_001346092	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
18632	chr1	166822551	166822650	+	0	NA	Intergenic	Intergenic	-16875	NM_017542	57645		NM_017542	ENSG00000143157	POGK	BASS2|KRBOX2|LST003	pogo transposable element derived with KRAB domain	protein-coding
135395	chr2	160516571	160517230	+	0	NA	Intergenic	Intergenic	-23093	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
303	chr1	964801	965330	+	0	NA	exon (NM_198317, exon 12 of 12)	exon (NM_198317, exon 12 of 12)	-1417	NM_001367552	84069		NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
114237	chr19	11499051	11499550	+	0	NA	intron (NM_138783, intron 1 of 8)	MLT1E1|LTR|ERVL-MaLR	-3678	NR_107014	102465856		NR_107014	ENSG00000274713	MIR7974	hsa-mir-7974	microRNA 7974	ncRNA
59107	chr13	21174671	21175030	+	0	NA	intron (NM_001166017, intron 1 of 7)	L1ME3A|LINE|L1	1702	NM_001166017	221150		NM_145061	ENSG00000165480	SKA3	C13orf3|RAMA1	spindle and kinetochore associated complex subunit 3	protein-coding
229574	chr9	123326651	123326950	+	0	NA	Intergenic	Intergenic	-29397	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
209485	chr7	76613801	76614300	+	0	NA	intron (NM_012230, intron 4 of 6)	intron (NM_012230, intron 4 of 6)	13253	NM_012230	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
103348	chr17	78103651	78103950	+	0	NA	intron (NM_001142640, intron 21 of 21)	MLT1B|LTR|ERVL-MaLR	24955	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
137418	chr2	196287951	196288450	+	0	NA	intron (NM_001348768, intron 14 of 28)	intron (NM_001348768, intron 14 of 28)	28176	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
113757	chr19	10507801	10508000	+	0	NA	Intergenic	AluSx|SINE|Alu	-4544	NM_203500	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
96502	chr17	40312971	40313130	+	0	NA	intron (NM_000964, intron 1 of 8)	intron (NM_000964, intron 1 of 8)	3870	NM_000964	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
39824	chr11	62036651	62036950	+	0	NA	Intergenic	AluJb|SINE|Alu	-69166	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
185139	chr5	119311551	119312430	+	0	NA	intron (NM_001077654, intron 1 of 1)	L1MC4a|LINE|L1	-21185	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
79547	chr16	914551	914730	+	0	NA	intron (NM_001352020, intron 2 of 10)	intron (NM_001352020, intron 2 of 10)	-6393	NR_110946	101929387		NR_110945	ENSG00000260439	LMF1-AS1	LA16c-366D3.1	LMF1 antisense RNA 1	ncRNA
214034	chr7	143305221	143306230	+	0	NA	3' UTR (NM_032983, exon 10 of 10)	3' UTR (NM_032983, exon 10 of 10)	-10386	NR_046453	1180		NM_000083	ENSG00000188037	CLCN1	CLC1	chloride voltage-gated channel 1	protein-coding
70658	chr14	103055701	103055900	+	0	NA	intron (NM_006035, intron 1 of 36)	intron (NM_006035, intron 1 of 36)	1749	NM_006035	9578		NM_006035	ENSG00000198752	CDC42BPB	CHOCNS|MRCKB	CDC42 binding protein kinase beta	protein-coding
49846	chr12	32679001	32680550	+	0	NA	intron (NM_001330380, intron 1 of 18)	CpG	474	NM_012062	10059		NM_005690	ENSG00000087470	DNM1L	DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5	dynamin 1 like	protein-coding
20762	chr1	201000321	201000780	+	0	NA	exon (NM_001252103, exon 11 of 34)	exon (NM_001252103, exon 11 of 34)	23164	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
214301	chr7	149146571	149149830	+	0	NA	intron (NM_170686, intron 1 of 5)	CpG	747	NM_170686	57541		NM_020781	ENSG00000197024	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding
224354	chr9	7052601	7052900	+	0	NA	intron (NM_001354001, intron 18 of 22)	intron (NM_001354001, intron 18 of 22)	294777	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
35195	chr11	800151	801280	+	0	NA	intron (NM_145886, intron 11 of 15)	CpG	-2434	NM_001191061	79751		NM_024698	ENSG00000177542	SLC25A22	DEE3|EIEE3|GC-1|GC1|NET44	solute carrier family 25 member 22	protein-coding
69433	chr14	94128851	94130430	+	0	NA	promoter-TSS (NM_032036)	promoter-TSS (NM_032036)	-36	NM_032036	83982		NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	interferon alpha inducible protein 27 like 2	protein-coding
4134	chr1	19330951	19331050	+	0	NA	intron (NR_109848, intron 9 of 9)	MIRc|SINE|MIR	18674	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
207715	chr7	47475271	47475430	+	0	NA	intron (NM_022748, intron 4 of 30)	intron (NM_022748, intron 4 of 30)	-10547	NR_145813	109623468		NR_145813		SNORD151	-	small nucleolar RNA, C/D box 151	snoRNA
182196	chr5	56823101	56823580	+	0	NA	intron (NM_005921, intron 1 of 19)	L2b|LINE|L2	7791	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
35408	chr11	1393971	1394830	+	0	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	4466	NM_003957	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
26506	chr10	18653271	18653430	+	0	NA	intron (NM_001351116, intron 2 of 11)	intron (NM_001351116, intron 2 of 11)	-1763	NM_001351117	221078		NM_182543	ENSG00000241058	NSUN6	4933414E04Rik|ARL5B-AS1|MRT82|NOPD1	NOP2/Sun RNA methyltransferase 6	protein-coding
226670	chr9	75023601	75024430	+	0	NA	intron (NM_152420, intron 1 of 7)	LTR86A2|LTR|ERVL	3136	NM_001320497	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
94573	chr17	29630921	29631180	+	0	NA	exon (NM_001282129, exon 16 of 16)	exon (NM_001282129, exon 16 of 16)	-9627	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
13942	chr1	120334401	120334950	+	0	NA	Intergenic	Intergenic	-80352	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
231367	chr9	130664321	130665050	+	0	NA	promoter-TSS (NM_021619)	promoter-TSS (NM_021619)	91	NM_021619	59335		NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding
101369	chr17	67243671	67243830	+	0	NA	intron (NM_001330447, intron 2 of 32)	intron (NM_001330447, intron 2 of 32)	-1026	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
126176	chr2	26519421	26520100	+	0	NA	intron (NM_194248, intron 3 of 46)	MIRb|SINE|MIR	38996	NM_001287489	9381		NM_004802	ENSG00000115155	OTOF	AUNB1|DFNB6|DFNB9|FER1L2|NSRD9	otoferlin	protein-coding
139788	chr2	230252351	230252850	+	0	NA	intron (NM_001278452, intron 9 of 24)	intron (NM_001278452, intron 9 of 24)	26864	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
35160	chr11	763371	764230	+	0	NA	exon (NM_006755, exon 6 of 8)	exon (NM_006755, exon 6 of 8)	13687	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
2295	chr1	8967671	8968230	+	0	NA	intron (NM_001270502, intron 4 of 5)	intron (NM_001270502, intron 4 of 5)	22082	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
5528	chr1	25807351	25807530	+	0	NA	intron (NM_206926, intron 3 of 11)	intron (NM_206926, intron 3 of 11)	7247	NM_020451	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
32052	chr10	101049951	101050700	+	0	NA	Intergenic	CpG	-11664	NR_135067	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
164154	chr3	56767801	56768200	+	0	NA	intron (NM_001289698, intron 3 of 10)	AluSz|SINE|Alu	7717	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
106538	chr18	21592321	21593130	+	0	NA	intron (NM_052911, intron 1 of 11)	SVA_D|Retroposon|SVA	7979	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
77064	chr15	78883051	78883350	+	0	NA	intron (NM_001265604, intron 3 of 11)	AluSz|SINE|Alu	10211	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
81956	chr16	11851051	11852580	+	0	NA	promoter-TSS (NM_015659)	promoter-TSS (NM_015659)	-273	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
221917	chr8	129496601	129496800	+	0	NA	intron (NR_130917, intron 1 of 3)	intron (NR_130917, intron 1 of 3)	-12558	NR_037457	100500839		NR_037457	ENSG00000263763	MIR3686	-	microRNA 3686	ncRNA
204836	chr7	5748171	5748330	+	0	NA	intron (NM_207111, intron 3 of 16)	LTR51|LTR|ERV1	33413	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
155804	chr22	39305521	39305980	+	0	NA	Intergenic	AluSx1|SINE|Alu	8161	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
190582	chr5	181053871	181054130	+	0	NA	intron (NM_152547, intron 6 of 10)	intron (NM_152547, intron 6 of 10)	-10516	NR_107056	102465882		NR_107056	ENSG00000277912	MIR8089	hsa-mir-8089	microRNA 8089	ncRNA
214978	chr7	152099671	152099830	+	0	NA	intron (NR_163957, intron 2 of 10)	intron (NR_163957, intron 2 of 10)	24713	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
160762	chr3	32673701	32673900	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-11388	NR_046352	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
21487	chr1	205679571	205680730	+	0	NA	intron (NM_033102, intron 1 of 4)	CpG	359	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
114010	chr19	10868871	10869600	+	0	NA	exon (NM_001136482, exon 7 of 7)	exon (NM_001136482, exon 7 of 7)	-2318	NM_199141	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
154090	chr22	30943051	30943880	+	0	NA	intron (NM_014941, intron 7 of 26)	intron (NM_014941, intron 7 of 26)	21157	NR_026920	150291		NM_153044	ENSG00000235989	MORC2-AS1	C22orf27|NCRNA00325	MORC2 antisense RNA 1	ncRNA
40272	chr11	63820751	63821030	+	0	NA	intron (NM_138471, intron 5 of 5)	AluYg6|SINE|Alu	7434	NM_138471	144097		NM_138471	ENSG00000168005	SPINDOC	C11orf84|SPIN-DOC	spindlin interactor and repressor of chromatin binding	protein-coding
118950	chr19	38835721	38836250	+	0	NA	TTS (NM_001005335).2	TTS (NM_001005335).2	-4191	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
204511	chr7	4790471	4791000	+	0	NA	exon (NM_001364858, exon 15 of 16)	exon (NM_001364858, exon 15 of 16)	-2096	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
6285	chr1	27605301	27605530	+	0	NA	Intergenic	Intergenic	-1271	NM_001371928	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
6333	chr1	27673571	27673930	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-1558	NM_022872	2537		NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon alpha inducible protein 6	protein-coding
167446	chr3	129086351	129086680	+	0	NA	Intergenic	Intergenic	25736	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
182168	chr5	56669801	56670400	+	0	NA	Intergenic	Intergenic	-63844	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
228987	chr9	113566601	113566800	+	0	NA	intron (NM_001351526, intron 2 of 8)	intron (NM_001351526, intron 2 of 8)	1643	NM_001351526	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
238064	chrX	135977301	135977930	+	0	NA	Intergenic	X7B_LINE|LINE|CR1	-3627	NM_173470	93380		NM_173470	ENSG00000169446	MMGT1	EMC5|TMEM32	membrane magnesium transporter 1	protein-coding
144091	chr20	33755901	33756500	+	0	NA	intron (NM_001282933, intron 5 of 14)	AluJb|SINE|Alu	24204	NM_001282933	84905		NM_032819	ENSG00000131061	ZNF341	HIES3	zinc finger protein 341	protein-coding
32544	chr10	103197471	103197830	+	0	NA	Intergenic	L2c|LINE|L2	-4344	NM_001351197	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
124702	chr2	3580121	3580780	+	0	NA	intron (NM_001011, intron 6 of 6)	intron (NM_001011, intron 6 of 6)	5190	NM_001011	6201		NM_001011	ENSG00000171863	RPS7	DBA8|S7|eS7	ribosomal protein S7	protein-coding
101063	chr17	64835171	64835800	+	0	NA	intron (NR_024386, intron 1 of 10)	intron (NR_024386, intron 1 of 10)	1699	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
232200	chr9	134328171	134328730	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	1995	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
174862	chr4	48699621	48700380	+	0	NA	intron (NM_015030, intron 2 of 63)	intron (NM_015030, intron 2 of 63)	80279	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
183451	chr5	79200571	79200850	+	0	NA	Intergenic	L1MC1|LINE|L1	-35421	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
218106	chr8	41421251	41421350	+	0	NA	Intergenic	Intergenic	-5355	NR_145746	109616980		NR_145746	ENSG00000238936	SNORD65B	-	small nucleolar RNA, C/D box 65B	snoRNA
130336	chr2	84992901	84993630	+	0	NA	intron (NM_020122, intron 1 of 6)	L3|LINE|CR1	22104	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
75344	chr15	65401451	65401550	+	0	NA	intron (NM_020962, intron 4 of 19)	intron (NM_020962, intron 4 of 19)	21447	NM_020962	57722		NM_020962	ENSG00000103742	IGDCC4	DDM36|NOPE	immunoglobulin superfamily DCC subclass member 4	protein-coding
110161	chr19	1646571	1646930	+	0	NA	intron (NM_003200, intron 2 of 18)	intron (NM_003200, intron 2 of 18)	5865	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
118600	chr19	36607621	36607880	+	0	NA	intron (NM_001256838, intron 2 of 4)	MER96|DNA|hAT	2437	NM_001256838	84911		NM_032825	ENSG00000161298	ZNF382	KS1	zinc finger protein 382	protein-coding
76117	chr15	72515601	72516350	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	41645	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
56787	chr12	120193271	120193600	+	0	NA	intron (NM_006836, intron 1 of 57)	AluSz6|SINE|Alu	1280	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
162832	chr3	49174071	49174430	+	0	NA	exon (NM_173546, exon 3 of 6)	exon (NM_173546, exon 3 of 6)	2652	NM_173546	200942		NM_173546	ENSG00000185909	KLHDC8B	CHL	kelch domain containing 8B	protein-coding
107181	chr18	35580931	35582550	+	0	NA	promoter-TSS (NM_001384443)	promoter-TSS (NM_001384443)	0	NM_001384444	2589		NM_020474	ENSG00000141429	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
73973	chr15	51888221	51888800	+	0	NA	intron (NM_014547, intron 4 of 9)	intron (NM_014547, intron 4 of 9)	35610	NR_109775	100422556		NR_109775		LOC100422556	-	LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene	pseudo
138267	chr2	203492701	203493500	+	0	NA	intron (NM_001329728, intron 2 of 15)	intron (NM_001329728, intron 2 of 15)	42201	NM_203365	65059		NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
208269	chr7	65767321	65767780	+	0	NA	intron (NR_038378, intron 1 of 7)	intron (NR_038378, intron 1 of 7)	3260	NR_038378	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
84758	chr16	30977401	30978180	+	0	NA	intron (NM_014712, intron 13 of 18)	intron (NM_014712, intron 13 of 18)	-7417	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
163005	chr3	49783071	49783630	+	0	NA	intron (NM_153273, intron 1 of 5)	AluJb|SINE|Alu	2844	NM_001242829	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
122559	chr19	49659051	49659150	+	0	NA	TTS (NM_001197122)	TTS (NM_001197122)	-6042	NM_001282519	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
151925	chr22	19031851	19032680	+	0	NA	Intergenic	Intergenic	9641	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
42526	chr11	70755571	70755800	+	0	NA	intron (NM_001379226, intron 4 of 15)	intron (NM_001379226, intron 4 of 15)	71209	NM_001379226	22941		NM_012309	ENSG00000162105	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
72827	chr15	40126321	40126880	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-17721	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
212667	chr7	129595101	129595330	+	0	NA	Intergenic	L1MC3|LINE|L1	-16505	NM_001293163	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
172420	chr4	1854051	1854350	+	0	NA	intron (NM_012318, intron 1 of 13)	AluSg|SINE|Alu	1956	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
169858	chr3	177196071	177196700	+	0	NA	promoter-TSS (NM_001321195)	promoter-TSS (NM_001321195)	93	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
41122	chr11	65563101	65563830	+	0	NA	Intergenic	Intergenic	-5106	NM_001130144	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
16995	chr1	156003471	156003830	+	0	NA	Intergenic	Intergenic	17301	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
67820	chr14	73825321	73826000	+	0	NA	intron (NR_135238, intron 1 of 1)	intron (NR_135238, intron 1 of 1)	4475	NR_135238	100506498		NR_135238	ENSG00000258586	LINC02274	-	long intergenic non-protein coding RNA 2274	ncRNA
3476	chr1	15965771	15966680	+	0	NA	intron (NM_001324138, intron 2 of 14)	intron (NM_001324138, intron 2 of 14)	9876	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
232081	chr9	133539401	133539600	+	0	NA	intron (NM_014694, intron 4 of 18)	intron (NM_014694, intron 4 of 18)	4796	NM_014694	9719		NM_014694	ENSG00000197859	ADAMTSL2	ADAMTSL-2|GPHYSD1	ADAMTS like 2	protein-coding
16960	chr1	155938021	155938950	+	0	NA	Intergenic	Intergenic	-3153	NM_181885	339403		NM_181885	ENSG00000173080	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin family peptide/INSL5 receptor 4	protein-coding
134499	chr2	143327801	143328480	+	0	NA	intron (NM_018460, intron 6 of 13)	L1PA7|LINE|L1	198721	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
204497	chr7	4769821	4770280	+	0	NA	3' UTR (NM_001037165, exon 9 of 9)	3' UTR (NM_001037165, exon 9 of 9)	-5573	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
126149	chr2	26187351	26188050	+	0	NA	exon (NM_001168241, exon 6 of 6)	exon (NM_001168241, exon 6 of 6)	6984	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
132830	chr2	110609651	110610100	+	0	NA	intron (NM_001384363, intron 1 of 22).2	intron (NM_001384363, intron 1 of 22).2	965	NM_001384363	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
239097	chrY	10825301	10825500	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	914602	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
109099	chr18	79969521	79970050	+	0	NA	intron (NM_001136180, intron 3 of 3)	L1ME3C|LINE|L1	5142	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
57812	chr12	123143001	123143400	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	7890	NM_020845	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
130491	chr2	85578271	85579800	+	0	NA	exon (NM_003761, exon 2 of 3)	exon (NM_003761, exon 2 of 3)	1449	NM_003761	8673		NM_003761	ENSG00000118640	VAMP8	EDB|VAMP-8	vesicle associated membrane protein 8	protein-coding
84278	chr16	30069651	30069750	+	0	NA	intron (NM_184041, intron 7 of 8)	intron (NM_184041, intron 7 of 8)	3940	NM_184041	226		NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase, fructose-bisphosphate A	protein-coding
159503	chr3	14397501	14398230	+	0	NA	Intergenic	Intergenic	-4711	NM_001134367	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
148372	chr20	63884651	63885230	+	0	NA	intron (NM_001243895, intron 5 of 5)	intron (NM_001243895, intron 5 of 5)	-10186	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
191262	chr6	6006171	6006330	+	0	NA	intron (NM_001278710, intron 2 of 3)	intron (NM_001278710, intron 2 of 3)	675	NM_016588	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
127759	chr2	43997571	43997730	+	0	NA	Intergenic	L2a|LINE|L2	-1661	NM_133259	10128		NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC|MC4DN5	leucine rich pentatricopeptide repeat containing	protein-coding
31528	chr10	96844021	96844280	+	0	NA	intron (NM_032440, intron 2 of 7)	intron (NM_032440, intron 2 of 7)	11205	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
156700	chr22	41684751	41685400	+	0	NA	intron (NM_005008, intron 1 of 3)	AluSx1|SINE|Alu	3792	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
223852	chr9	86721	86980	+	0	NA	intron (NR_121190, intron 2 of 2).2	intron (NR_121190, intron 2 of 2).2	14160	NR_121190	101929127		NR_121188	ENSG00000277631	PGM5P3-AS1	FAM233B	PGM5P3 antisense RNA 1	ncRNA
98441	chr17	46876571	46876730	+	0	NA	exon (NM_003396, exon 4 of 4)	exon (NM_003396, exon 4 of 4)	25067	NM_003396	7484		NM_003396	ENSG00000158955	WNT9B	WNT14B|WNT15	Wnt family member 9B	protein-coding
51900	chr12	53619871	53620630	+	0	NA	intron (NR_159377, intron 1 of 14)	AluSz|SINE|Alu	5740	NM_001366562	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
104206	chr17	80480651	80480950	+	0	NA	Intergenic	Intergenic	-4193	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
126092	chr2	25833671	25833830	+	0	NA	intron (NM_018263, intron 2 of 11)	intron (NM_018263, intron 2 of 11)	-2849	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
205430	chr7	16753571	16754650	+	0	NA	intron (NM_014399, intron 1 of 5)	CpG	355	NM_014399	27075		NM_014399	ENSG00000106537	TSPAN13	NET-6|NET6|TM4SF13	tetraspanin 13	protein-coding
146701	chr20	50554051	50554350	+	0	NA	intron (NM_001278618, intron 1 of 8)	AluJr|SINE|Alu	-31586	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
89714	chr16	89412051	89412600	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-18593	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
1790	chr1	6127501	6128700	+	0	NA	exon (NM_015557, exon 25 of 42)	exon (NM_015557, exon 25 of 42)	52221	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
109142	chr18	80244801	80245250	+	0	NA	intron (NM_032510, intron 1 of 2)	intron (NM_032510, intron 1 of 2)	2489	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
130760	chr2	86818901	86819500	+	0	NA	intron (NM_001178100, intron 3 of 3)	Tigger1|DNA|TcMar-Tigger	-10804	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
198963	chr6	110882221	110882730	+	0	NA	intron (NM_001287216, intron 1 of 4)	MER58A|DNA|hAT-Charlie	7691	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
7160	chr1	32242421	32243050	+	0	NA	Intergenic	Intergenic	-1025	NR_026850	339483		NM_178546	ENSG00000291132	MTMR9LP	MTMR9L	myotubularin related protein 9 like, pseudogene	pseudo
58703	chr12	132562671	132563030	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-19147	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
182072	chr5	55977821	55978500	+	0	NA	intron (NR_157112, intron 2 of 17)	LTR40a|LTR|ERVL	16803	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
89675	chr16	89376471	89376630	+	0	NA	intron (NR_045839, intron 2 of 9)	AluSx1|SINE|Alu	-54368	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
55726	chr12	108305071	108305230	+	0	NA	intron (NM_001142344, intron 1 of 2)	intron (NM_001142344, intron 1 of 2)	15512	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
40752	chr11	64838851	64838950	+	0	NA	exon (NM_017525, exon 8 of 37)	exon (NM_017525, exon 8 of 37)	5753	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
155037	chr22	37482951	37483050	+	0	NA	intron (NM_002405, intron 1 of 7)	L2|LINE|L2	3384	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
23424	chr1	228400251	228400850	+	0	NA	intron (NM_145214, intron 3 of 5)	intron (NM_145214, intron 3 of 5)	-3441	NR_106800	102465444		NR_106800	ENSG00000284311	MIR6742	hsa-mir-6742	microRNA 6742	ncRNA
140099	chr2	231461571	231462200	+	0	NA	exon (NM_005381, exon 3 of 14)	exon (NM_005381, exon 3 of 14)	-1443	NR_004398	25826		NR_004398	ENSG00000202400	SNORD82	RNU82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA
185267	chr5	124162851	124163150	+	0	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	275520	NR_125774	103724389		NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
76319	chr15	74387951	74388050	+	0	NA	intron (NR_146881, intron 2 of 3)	MER115|DNA|hAT-Tip100	8918	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
217610	chr8	29806251	29806980	+	0	NA	Intergenic	MIRb|SINE|MIR	21889	NR_125817	101929470		NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
25945	chr10	11407901	11408300	+	0	NA	Intergenic	Intergenic	-63426	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
88080	chr16	81482271	81482680	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-12879	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
114169	chr19	11372001	11372200	+	0	NA	Intergenic	L2a|LINE|L2	-2566	NM_175871	126074		NM_175871	ENSG00000173928	SWSAP1	C19orf39|SWS1AP1|ZSWIM7AP1	SWIM-type zinc finger 7 associated protein 1	protein-coding
117116	chr19	19206951	19207630	+	0	NA	Intergenic	Intergenic	-3876	NM_001300945	126382		NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
157196	chr22	43126171	43126730	+	0	NA	intron (NM_001197, intron 2 of 4)	AluY|SINE|Alu	15700	NM_001197	638		NM_001197	ENSG00000100290	BIK	BIP1|BP4|NBK	BCL2 interacting killer	protein-coding
209992	chr7	92854721	92854980	+	0	NA	intron (NR_110088, intron 1 of 1)	intron (NR_110088, intron 1 of 1)	-18277	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
77998	chr15	89577321	89577730	+	0	NA	intron (NM_001308025, intron 1 of 21)	L2a|LINE|L2	1938	NM_001308025	90381		NM_152259	ENSG00000140534	TICRR	C15orf42|SLD3|Treslin	TOPBP1 interacting checkpoint and replication regulator	protein-coding
210003	chr7	93114221	93114480	+	0	NA	intron (NM_001193307, intron 1 of 1)	L1PA5|LINE|L1	3629	NM_017654	54809		NM_017654	ENSG00000205413	SAMD9	C7orf5|DRIF1|M7MLS2|MIRAGE|NFTC|OEF1|OEF2	sterile alpha motif domain containing 9	protein-coding
64184	chr14	22981471	22981950	+	0	NA	exon (NM_032876, exon 1 of 8)	exon (NM_032876, exon 1 of 8)	841	NM_001289097	84962		NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
139294	chr2	219517001	219517400	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	2718	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
140142	chr2	231594801	231595280	+	0	NA	TTS (NM_152614)	TTS (NM_152614)	2176	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
212305	chr7	124932851	124933530	+	0	NA	intron (NR_125719, intron 1 of 7)	AluSx3|SINE|Alu	-3207	NR_003104	25913		NM_015450	ENSG00000128513	POT1	CMM10|CRMCC3|GLM9|HPOT1|PFBMFT8|TPDS3	protection of telomeres 1	protein-coding
11698	chr1	91854921	91855380	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	31001	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
130517	chr2	85607301	85607700	+	0	NA	3' UTR (NM_001013649, exon 4 of 4)	3' UTR (NM_001013649, exon 4 of 4)	4566	NM_001013649	388969		NM_001013649	ENSG00000168887	C2orf68	HCRCN81	chromosome 2 open reading frame 68	protein-coding
4296	chr1	20081001	20081400	+	0	NA	intron (NM_000929, intron 1 of 4)	intron (NM_000929, intron 1 of 4)	11006	NM_000929	5322		NM_000929	ENSG00000127472	PLA2G5	FRFB|GV-PLA2|PLA2-10|hVPLA(2)	phospholipase A2 group V	protein-coding
200519	chr6	136051071	136051430	+	0	NA	intron (NR_149042, intron 3 of 3)	UCON26|Unknown|Unknown	21577	NR_149042	644135		NR_149042	ENSG00000237596	PDE7B-AS1	-	PDE7B antisense RNA 1	ncRNA
226999	chr9	83665871	83666430	+	0	NA	intron (NM_053067, intron 7 of 9)	intron (NM_053067, intron 7 of 9)	-41685	NR_135839	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
116888	chr19	18686551	18686850	+	0	NA	intron (NM_015321, intron 1 of 13)	intron (NM_015321, intron 1 of 13)	3020	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
201101	chr6	142848671	142849250	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	96216	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
166324	chr3	112794701	112794930	+	0	NA	Intergenic	Intergenic	-7663	NR_149027	100129297		NR_149026		CD200R1L-AS1	-	CD200R1L antisense RNA 1	ncRNA
214586	chr7	150633271	150633900	+	0	NA	promoter-TSS (NM_001244072)	promoter-TSS (NM_001244072)	-937	NM_001244072	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
179074	chr4	167021571	167021900	+	0	NA	intron (NM_001204354, intron 2 of 9)	intron (NM_001204354, intron 2 of 9)	212691	NM_001204353	50859		NM_016950	ENSG00000196104	SPOCK3	HSAJ1454|TES-3|TICN3	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	protein-coding
10402	chr1	65147301	65148050	+	0	NA	promoter-TSS (NM_013410)	promoter-TSS (NM_013410)	126	NM_203464	205		NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
189954	chr5	177413871	177414030	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-4386	NM_000505	2161		NM_000505	ENSG00000131187	F12	HAE3|HAEX|HAF	coagulation factor XII	protein-coding
108705	chr18	77066951	77068000	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	-50420	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
214807	chr7	151203201	151203600	+	0	NA	exon (NM_001304419, exon 3 of 19)	exon (NM_001304419, exon 3 of 19)	2096	NM_001304419	392843		NM_001304419	ENSG00000278685	IQCA1L	IQCA1P1	IQ motif containing with AAA domain 1 like	protein-coding
142095	chr20	2527321	2527780	+	0	NA	Intergenic	Intergenic	-3028	NM_001282495	79175		NM_024325	ENSG00000088876	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
117634	chr19	23415371	23416050	+	0	NA	intron (NR_126448, intron 1 of 5)	intron (NR_126448, intron 1 of 5)	364	NR_126448	104472717		NR_126448	ENSG00000269416	LINC01224	-	long intergenic non-protein coding RNA 1224	ncRNA
118422	chr19	35778301	35778500	+	0	NA	intron (NM_052948, intron 4 of 20)	intron (NM_052948, intron 4 of 20)	2836	NM_001366178	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
157168	chr22	42959871	42960230	+	0	NA	promoter-TSS (NM_001184971)	promoter-TSS (NM_001184971)	-151	NM_001349968	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
38643	chr11	46365821	46366080	+	0	NA	intron (NM_001105540, intron 1 of 31)	intron (NM_001105540, intron 1 of 31)	4344	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
140393	chr2	233075201	233076330	+	0	NA	intron (NM_001017915, intron 1 of 26).2	intron (NM_001017915, intron 1 of 26).2	15423	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
67738	chr14	73574971	73575130	+	0	NA	TTS (NM_001364178)	TTS (NM_001364178)	5837	NM_006821	10965		NM_006821	ENSG00000119673	ACOT2	CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128	acyl-CoA thioesterase 2	protein-coding
53489	chr12	66269721	66270000	+	0	NA	Intergenic	Intergenic	18778	NR_106757	102465249		NR_106757	ENSG00000284011	MIR6502	hsa-mir-6502	microRNA 6502	ncRNA
178228	chr4	142844871	142845030	+	0	NA	intron (NM_001385337, intron 1 of 20)	intron (NM_001385337, intron 1 of 20)	1351	NM_001385335	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
189604	chr5	175840321	175840630	+	0	NA	intron (NM_006650, intron 2 of 4)	intron (NM_006650, intron 2 of 4)	-31103	NM_001008220	10814		NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
226124	chr9	63105651	63105950	+	0	NA	intron (NR_135597, intron 4 of 4)	intron (NR_135597, intron 4 of 4)	19419	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
89222	chr16	88625221	88625880	+	0	NA	intron (NM_144604, intron 13 of 17)	intron (NM_144604, intron 13 of 17)	-13022	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
231861	chr9	132886051	132886350	+	0	NA	intron (NR_133631, intron 2 of 2)	intron (NR_133631, intron 2 of 2)	-7154	NM_001371771	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
67569	chr14	71403601	71403980	+	0	NA	intron (NM_001354287, intron 2 of 23)	intron (NM_001354287, intron 2 of 23)	5453	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
179938	chr5	770221	771000	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	14119	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
50897	chr12	49275001	49276000	+	0	NA	TTS (NM_001303117)	TTS (NM_001303117)	10418	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
127931	chr2	46490651	46490950	+	0	NA	Intergenic	Intergenic	11235	NM_001145051	388946		NM_001145051	ENSG00000284701	TMEM247	-	transmembrane protein 247	protein-coding
188395	chr5	152768151	152768250	+	0	NA	intron (NR_109877, intron 3 of 4)	L1PA3|LINE|L1	204149	NR_109877	101927134		NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
17983	chr1	160503851	160504350	+	0	NA	intron (NM_001184714, intron 1 of 7)	L1MA9|LINE|L1	19155	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
202515	chr6	158564521	158565580	+	0	NA	intron (NR_164859, intron 1 of 16)	intron (NR_164859, intron 1 of 16)	4959	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
65845	chr14	54976021	54976280	+	0	NA	intron (NM_007086, intron 16 of 25)	intron (NM_007086, intron 16 of 25)	50949	NM_007086	11169		NM_007086	ENSG00000198554	WDHD1	AND-1|AND1|CHTF4|CTF4	WD repeat and HMG-box DNA binding protein 1	protein-coding
7811	chr1	36282001	36282200	+	0	NA	intron (NM_001321471, intron 3 of 12)	AluJo|SINE|Alu	-24268	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
225873	chr9	38672471	38672930	+	0	NA	Intergenic	Intergenic	51612	NR_027294	158228		NR_027294		FAM201A	C9orf122	family with sequence similarity 201 member A	ncRNA
208137	chr7	63899851	63901650	+	0	NA	Intergenic	CpG	-98056	NR_145488								
146639	chr20	50284951	50285430	+	0	NA	Intergenic	Intergenic	-7530	NR_034124	284751		NM_001025463	ENSG00000203999	LINC01270	-	long intergenic non-protein coding RNA 1270	ncRNA
210309	chr7	99469251	99469500	+	0	NA	Intergenic	Intergenic	-3208	NM_001003713	9551		NM_004889	ENSG00000241468	ATP5MF	ATP5J2|ATP5JL	ATP synthase membrane subunit f	protein-coding
71683	chr15	20100601	20101730	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-181579	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
5878	chr1	26780051	26780150	+	0	NA	exon (NM_006015, exon 20 of 20)	exon (NM_006015, exon 20 of 20)	-6954	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
138139	chr2	202307601	202307800	+	0	NA	Intergenic	FLAM_C|SINE|Alu	14649	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
196020	chr6	42024201	42024850	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	24369	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
145211	chr20	38903271	38904530	+	0	NA	intron (NM_001172735, intron 6 of 9)	intron (NM_001172735, intron 6 of 9)	-22517	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
33933	chr10	124611511	124612300	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-92123	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
172952	chr4	3529421	3530030	+	0	NA	intron (NM_002337, intron 1 of 7)	intron (NM_002337, intron 1 of 7)	2424	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
117733	chr19	29604151	29604250	+	0	NA	Intergenic	AluSg|SINE|Alu	-2083	NM_006627	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
231605	chr9	131559201	131559700	+	0	NA	TTS (NM_001365666)	TTS (NM_001365666)	13927	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
193513	chr6	30582121	30582380	+	0	NA	intron (NM_001090, intron 8 of 23).3	AluY|SINE|Alu	-2082	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
238408	chrX	150570371	150571580	+	0	NA	intron (NM_001376908, intron 1 of 14)	intron (NM_001376908, intron 1 of 14)	2354	NM_000252	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
109393	chr19	662901	664030	+	0	NA	promoter-TSS (NM_001366018)	promoter-TSS (NM_001366018)	-251	NM_001366018	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
232814	chr9	136719051	136719930	+	0	NA	intron (NM_152421, intron 2 of 4)	intron (NM_152421, intron 2 of 4)	6747	NR_002975	677824		NR_002975	ENSG00000280496	SNORA17B	ACA43|SNORA43	small nucleolar RNA, H/ACA box 17B	snoRNA
167479	chr3	129132201	129132630	+	0	NA	intron (NM_001204890, intron 9 of 12)	L2b|LINE|L2	-10265	NM_001204883	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
235483	chrX	46792351	46792730	+	0	NA	Intergenic	Intergenic	-33422	NM_032591	84679		NM_032591	ENSG00000065923	SLC9A7	MRX108|NHE-7|NHE7|SLC9A6	solute carrier family 9 member A7	protein-coding
120632	chr19	45064451	45065030	+	0	NA	intron (NM_001278439, intron 12 of 19)	intron (NM_001278439, intron 12 of 19)	-10887	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
18415	chr1	161446421	161446730	+	0	NA	Intergenic	CpG	-58882	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
234085	chrX	9195571	9195730	+	0	NA	Intergenic	Intergenic	-161523	NM_205849	171483		NM_173696	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9 member B	protein-coding
59309	chr13	24280771	24281580	+	0	NA	intron (NM_001286794, intron 2 of 10)	intron (NM_001286794, intron 2 of 10)	10425	NM_001286793	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
97847	chr17	44966221	44966680	+	0	NA	intron (NM_006688, intron 1 of 1)	intron (NM_006688, intron 1 of 1)	1853	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
169677	chr3	171834201	171834430	+	0	NA	Intergenic	Intergenic	-9034	NM_001164436	389177		NM_001164436	ENSG00000186329	TMEM212	-	transmembrane protein 212	protein-coding
45604	chr11	118900571	118901180	+	0	NA	exon (NM_182557, exon 6 of 8)	exon (NM_182557, exon 6 of 8)	7483	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
8362	chr1	40312351	40313230	+	0	NA	intron (NM_001852, intron 4 of 31)	intron (NM_001852, intron 4 of 31)	4496	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
91994	chr17	7438151	7438680	+	0	NA	TTS (NM_001320444)	TTS (NM_001320444)	117	NR_130156	2256		NM_004112	ENSG00000161958	FGF11	FGF-11|FHF-3|FHF3	fibroblast growth factor 11	protein-coding
172602	chr4	2488801	2489000	+	0	NA	intron (NM_001185009, intron 2 of 8)	AluSq2|SINE|Alu	19447	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
173364	chr4	7857471	7857830	+	0	NA	intron (NM_001371091, intron 4 of 17)	intron (NM_001371091, intron 4 of 17)	14658	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
231955	chr9	133143151	133143560	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	5855	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
66761	chr14	64525801	64526400	+	0	NA	intron (NM_014950, intron 2 of 2)	AluSg7|SINE|Alu	14268	NR_110550	102723809		NR_110550	ENSG00000259116	HSPA2-AS1	-	HSPA2 and ZBTB1 antisense RNA 1	ncRNA
129526	chr2	69692551	69692650	+	0	NA	intron (NM_001320698, intron 2 of 14)	L2c|LINE|L2	48792	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
105414	chr17	82847051	82847450	+	0	NA	intron (NM_005993, intron 13 of 38)	AluY|SINE|Alu	-7228	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
102883	chr17	76519601	76519800	+	0	NA	Intergenic	L2|LINE|L2	-7886	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
186500	chr5	138333721	138334180	+	0	NA	intron (NR_146628, intron 2 of 3)	AluSx1|SINE|Alu	1845	NR_146628	100128966		NR_146628	ENSG00000120709	LOC100128966	-	uncharacterized LOC100128966	ncRNA
155210	chr22	37848701	37849900	+	0	NA	promoter-TSS (NM_001349853)	promoter-TSS (NM_001349853)	18	NM_001349853	129138		NM_138797	ENSG00000100124	ANKRD54	LIAR	ankyrin repeat domain 54	protein-coding
115290	chr19	14569251	14569350	+	0	NA	intron (NM_004146, intron 1 of 2)	AluJr|SINE|Alu	2766	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
197356	chr6	73455851	73456150	+	0	NA	Intergenic	L1MB3|LINE|L1	-3703	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
189703	chr5	176515301	176515700	+	0	NA	Intergenic	AluJr4|SINE|Alu	21902	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
99758	chr17	50977121	50977380	+	0	NA	intron (NM_001130527, intron 26 of 29)	intron (NM_001130527, intron 26 of 29)	69628	NM_001251971	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
82239	chr16	15051671	15051830	+	0	NA	intron (NM_173474, intron 1 of 9).2	AluJr|SINE|Alu	4324	NM_173474	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
43240	chr11	75506851	75507150	+	0	NA	intron (NM_030792, intron 1 of 16)	intron (NM_030792, intron 1 of 16)	18573	NM_001351168	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
123441	chr19	54129121	54129650	+	0	NA	intron (NM_015629, intron 13 of 13)	MIRb|SINE|MIR	-8377	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
88637	chr16	85633951	85634250	+	0	NA	exon (NM_014615, exon 2 of 16)	exon (NM_014615, exon 2 of 16)	20778	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
38545	chr11	45911251	45912130	+	0	NA	intron (NM_057174, intron 9 of 10)	MIR|SINE|MIR	-4419	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
25180	chr10	5479751	5479850	+	0	NA	Intergenic	Intergenic	19770	NM_017422	51806		NM_017422	ENSG00000178372	CALML5	CLSP	calmodulin like 5	protein-coding
145909	chr20	45969351	45970400	+	0	NA	intron (NM_022095, intron 2 of 27)	intron (NM_022095, intron 2 of 27)	2328	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
69388	chr14	94039151	94039650	+	0	NA	intron (NM_023112, intron 3 of 5)	(GAAAA)n|Simple_repeat|Simple_repeat	13060	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
24703	chr1	247330571	247331400	+	0	NA	intron (NM_032752, intron 2 of 9)	CpG	882	NM_032752	84838		NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
96776	chr17	41782301	41782700	+	0	NA	intron (NM_001352776, intron 1 of 15)	intron (NM_001352776, intron 1 of 15)	3595	NM_001352777	3728		NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PG|PKGB	junction plakoglobin	protein-coding
30782	chr10	84353321	84353950	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	25046	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
78293	chr15	90887871	90888230	+	0	NA	intron (NM_001143783, intron 3 of 16)	L2a|LINE|L2	3004	NM_001143784	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
69512	chr14	96037771	96037930	+	0	NA	Intergenic	Intergenic	-1474	NM_001282464	56967		NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
68097	chr14	75297101	75297300	+	0	NA	TTS (NR_038421)	TTS (NR_038421)	2796	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
178769	chr4	153398601	153399000	+	0	NA	intron (NM_032117, intron 6 of 7)	intron (NM_032117, intron 6 of 7)	54112	NR_045605	84057		NM_032117	ENSG00000121211	MND1	GAJ	meiotic nuclear divisions 1	protein-coding
34091	chr10	125160321	125160640	+	0	NA	promoter-TSS (NM_001290214)	promoter-TSS (NM_001290214)	83	NM_001290214	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
82988	chr16	22007451	22009200	+	0	NA	exon (NM_001164579, exon 1 of 3)	exon (NM_001164579, exon 1 of 3)	214	NM_001164579	730094		NM_173501	ENSG00000185716	MOSMO	ATTHOG|BC030336|C16orf52	modulator of smoothened	protein-coding
76357	chr15	74545251	74545350	+	0	NA	intron (NM_006465, intron 2 of 8)	MIRc|SINE|MIR	4080	NM_006465	10620		NM_006465	ENSG00000179361	ARID3B	BDP|DRIL2	AT-rich interaction domain 3B	protein-coding
60251	chr13	40586471	40587030	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	79891	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
145659	chr20	44961801	44962000	+	0	NA	Intergenic	L2b|LINE|L2	-1503	NM_006809	10953		NM_006809	ENSG00000025772	TOMM34	HTOM34P|TOM34|URCC3	translocase of outer mitochondrial membrane 34	protein-coding
215993	chr8	8887671	8888030	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	5780	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
71585	chr14	106506701	106507760	+	0	NA	Intergenic	Intergenic	24791	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
157576	chr22	45976071	45976630	+	0	NA	intron (NM_058238, intron 1 of 3)	CpG	812	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
168367	chr3	141899401	141900000	+	0	NA	intron (NM_001679, intron 1 of 6)	AluSp|SINE|Alu	23057	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
128809	chr2	62704121	62704380	+	0	NA	intron (NM_001142615, intron 1 of 22)	intron (NM_001142615, intron 1 of 22)	-1374	NM_001354212	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
818	chr1	1563601	1564200	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	10963	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
115143	chr19	14391901	14392300	+	0	NA	intron (NM_001784, intron 4 of 17)	AluSg|SINE|Alu	10656	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
184329	chr5	96941051	96941500	+	0	NA	intron (NM_005575, intron 1 of 17)	MER1A|DNA|hAT-Charlie	5195	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
83947	chr16	29136101	29136300	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	61358	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
79666	chr16	1231951	1232450	+	0	NA	Intergenic	Intergenic	-2016	NM_024164	64499		NM_024164	ENSG00000197253	TPSB2	TPS2|tryptaseB|tryptaseC	tryptase beta 2	protein-coding
225791	chr9	37488521	37489350	+	0	NA	intron (NM_001282766, intron 3 of 12)	intron (NM_001282766, intron 3 of 12)	2987	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
160236	chr3	23961321	23961780	+	0	NA	intron (NR_110524, intron 4 of 8)	AluSx1|SINE|Alu	-14988	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
63160	chr13	113647001	113647600	+	0	NA	Intergenic	Intergenic	10898	NM_000705	496		NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting subunit beta	protein-coding
26772	chr10	22912551	22913300	+	0	NA	Intergenic	Intergenic	-15099	NM_001282747	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
103216	chr17	77483671	77483830	+	0	NA	intron (NM_001293697, intron 2 of 9)	intron (NM_001293697, intron 2 of 9)	8115	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
191360	chr6	7202071	7202330	+	0	NA	intron (NM_001003698, intron 6 of 11)	intron (NM_001003698, intron 6 of 11)	94239	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
148270	chr20	63688701	63689380	+	0	NA	intron (NM_032957, intron 21 of 34)	intron (NM_032957, intron 21 of 34)	-7612	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
236276	chrX	66036271	66036430	+	0	NA	intron (NM_001184830, intron 1 of 6)	intron (NM_001184830, intron 1 of 6)	3730	NM_007268	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
150745	chr21	43767021	43767800	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	8898	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
63408	chr13	114079801	114080350	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-2120	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
6632	chr1	28922371	28922730	+	0	NA	intron (NM_001376013, intron 1 of 20)	AluJr4|SINE|Alu	7974	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
98340	chr17	46284121	46285280	+	0	NA	TTS (NM_001352769)	TTS (NM_001352769)	-10431	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
158271	chr22	50334121	50334200	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-7148	NM_001001794	414918		NM_001001794	ENSG00000205593	DENND6B	AFI1B|FAM116B	DENN domain containing 6B	protein-coding
30991	chr10	88114101	88114680	+	0	NA	Intergenic	Intergenic	250765	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
225460	chr9	35258751	35259080	+	0	NA	intron (NM_001371186, intron 6 of 38)	intron (NM_001371186, intron 6 of 38)	-82981	NM_001371187	10497		NM_006377	ENSG00000198722	UNC13B	MUNC13|UNC13|Unc13h2|munc13-2	unc-13 homolog B	protein-coding
63195	chr13	113786371	113786800	+	0	NA	intron (NM_001348663, intron 3 of 7)	(CCATCA)n|Simple_repeat|Simple_repeat	27359	NM_182614	348013		NM_182614	ENSG00000184497	TMEM255B	FAM70B	transmembrane protein 255B	protein-coding
173856	chr4	22668421	22668680	+	0	NA	Intergenic	Intergenic	-24364	NM_020973	57733		NM_020973	ENSG00000249948	GBA3	CBG|CBGL1|GLUC|KLRP	glucosylceramidase beta 3 (gene/pseudogene)	protein-coding
171667	chr3	197706551	197707450	+	0	NA	intron (NM_014687, intron 2 of 19)	intron (NM_014687, intron 2 of 19)	29904	NM_014687	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
182549	chr5	65760721	65761250	+	0	NA	intron (NM_020726, intron 2 of 12)	intron (NM_020726, intron 2 of 12)	38780	NM_020726	57486		NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
211420	chr7	105052551	105053030	+	0	NA	intron (NM_182931, intron 3 of 26)	AluSx|SINE|Alu	38585	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
51472	chr12	52064121	52064980	+	0	NA	Intergenic	Intergenic	-5424	NM_021934	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
197864	chr6	89082571	89083730	+	0	NA	intron (NM_006813, intron 1 of 1)	AluSz|SINE|Alu	2399	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
180827	chr5	32522801	32523550	+	0	NA	Intergenic	Intergenic	-62382	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
47799	chr12	6576121	6576630	+	0	NA	intron (NM_001273, intron 37 of 39)	AluJb|SINE|Alu	5234	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
120783	chr19	45441171	45441730	+	0	NA	intron (NM_001369412, intron 1 of 9)	intron (NM_001369412, intron 1 of 9)	4796	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
46262	chr11	124756001	124756980	+	0	NA	intron (NM_138961, intron 3 of 6)	intron (NM_138961, intron 3 of 6)	-2644	NR_120577	101929340		NR_120577	ENSG00000250073	ESAM-AS1	-	ESAM antisense RNA 1	ncRNA
222606	chr8	141032151	141032450	+	0	NA	Intergenic	L2a|LINE|L2	-30221	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
192207	chr6	17748621	17748750	+	0	NA	Intergenic	AluY|SINE|Alu	41642	NR_134618	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
95007	chr17	32374101	32374500	+	0	NA	3' UTR (NM_001098507, exon 12 of 12)	3' UTR (NM_001098507, exon 12 of 12)	24143	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
177215	chr4	108473251	108473350	+	0	NA	Intergenic	Intergenic	-83933	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
117682	chr19	26826451	26826550	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-966931	NR_146735	101927151		NR_110687	ENSG00000267575	LINC02987	-	long intergenic non-protein coding RNA 2987	ncRNA
59869	chr13	30625221	30625480	+	0	NA	intron (NM_001321533, intron 2 of 6)	intron (NM_001321533, intron 2 of 6)	7430	NM_005800	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
148543	chr20	64184821	64185100	+	0	NA	intron (NM_004535, intron 1 of 22)	intron (NM_004535, intron 1 of 22)	20508	NM_004535	4661		NM_004535	ENSG00000196132	MYT1	C20orf36|MTF1|MYTI|NZF2|PLPB1|ZC2H2C1|ZC2HC4A	myelin transcription factor 1	protein-coding
100662	chr17	63710101	63710900	+	0	NA	exon (NM_153335, exon 6 of 9)	exon (NM_153335, exon 6 of 9)	10162	NR_046273	729683		NR_046273		LOC729683	-	uncharacterized LOC729683	ncRNA
122100	chr19	48752591	48753400	+	0	NA	promoter-TSS (NM_001384359)	promoter-TSS (NM_001384359)	-354	NM_001384359	2523		NM_000148	ENSG00000174951	FUT1	H|HH|HSC	fucosyltransferase 1 (H blood group)	protein-coding
162011	chr3	46440821	46441330	+	0	NA	intron (NM_002343, intron 14 of 16)	intron (NM_002343, intron 14 of 16)	-17408	NR_151704	105377068		NR_151704	ENSG00000283646	LINC02009	-	long intergenic non-protein coding RNA 2009	ncRNA
152749	chr22	21733971	21734700	+	0	NA	intron (NM_013313, intron 1 of 4)	L1MC3|LINE|L1	1459	NM_013313	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
185425	chr5	131109751	131110250	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	55256	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
2478	chr1	9666071	9666950	+	0	NA	intron (NM_005026, intron 1 of 23)	AluSx1|SINE|Alu	-11924	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
13649	chr1	116514901	116516190	+	0	NA	intron (NR_026665, intron 5 of 5)	intron (NR_026665, intron 5 of 5)	-36719	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
184023	chr5	91313851	91314750	+	0	NA	non-coding (NR_103549, exon 1 of 3)	non-coding (NR_103549, exon 1 of 3)	102	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
68129	chr14	75521351	75521780	+	0	NA	promoter-TSS (NM_006399)	promoter-TSS (NM_006399)	-904	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
222956	chr8	143170421	143170780	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-9946	NM_001130478	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
14070	chr1	120805351	120805850	+	0	NA	promoter-TSS (NM_001351372)	promoter-TSS (NM_001351372)	44	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
194503	chr6	33279371	33279530	+	0	NA	TTS (NM_003782).3	TTS (NM_003782).3	2327	NM_003782	8705		NM_003782	ENSG00000235863	B3GALT4	BETA3GALT4|GALT2|GALT4	beta-1,3-galactosyltransferase 4	protein-coding
206450	chr7	32884051	32884630	+	0	NA	intron (NM_015483, intron 1 of 3)	AluJr|SINE|Alu	7420	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
86294	chr16	58625401	58626650	+	0	NA	intron (NM_206999, intron 1 of 30)	intron (NM_206999, intron 1 of 30)	3801	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
7253	chr1	32354371	32354900	+	0	NA	Intergenic	AluSg|SINE|Alu	7608	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
107855	chr18	54805901	54806530	+	0	NA	intron (NM_001375327, intron 2 of 6)	intron (NM_001375327, intron 2 of 6)	-22262	NM_004163	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
3533	chr1	16076201	16076900	+	0	NA	Intergenic	MIR3|SINE|MIR	-2899	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
180545	chr5	14648301	14648970	+	0	NA	Intergenic	Intergenic	3747	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
190086	chr5	177801421	177801700	+	0	NA	intron (NR_157842, intron 3 of 3)	Tigger7|DNA|TcMar-Tigger	7947	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
70484	chr14	102083371	102083630	+	0	NA	intron (NM_001017963, intron 9 of 11)	intron (NM_001017963, intron 9 of 11)	3544	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
155312	chr22	38200451	38202300	+	0	NA	promoter-TSS (NM_012323)	promoter-TSS (NM_012323)	-557	NM_001161572	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
89573	chr16	89263101	89263500	+	0	NA	Intergenic	AluSx|SINE|Alu	-32828	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
115392	chr19	15265221	15265750	+	0	NA	exon (NM_001330384, exon 5 of 12)	exon (NM_001330384, exon 5 of 12)	14966	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
170130	chr3	183318951	183319250	+	0	NA	intron (NM_015078, intron 6 of 29)	Tigger1|DNA|TcMar-Tigger	65847	NM_032047	84002		NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
156057	chr22	39988101	39988600	+	0	NA	Intergenic	L2b|LINE|L2	-6604	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
104153	chr17	80391871	80392030	+	0	NA	intron (NM_001256071, intron 67 of 67)	AluSz|SINE|Alu	-23217	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
137554	chr2	197235751	197236250	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	38009	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
149662	chr21	33560001	33560280	+	0	NA	3' UTR (NM_032195, exon 7 of 7)	3' UTR (NM_032195, exon 7 of 7)	9478	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
203386	chr6	170553601	170555180	+	0	NA	promoter-TSS (NM_003194)	promoter-TSS (NM_003194)	21	NM_003194	6908		NM_003194	ENSG00000112592	TBP	GTF2D|GTF2D1|HDL4|SCA17|TBP1|TFIID	TATA-box binding protein	protein-coding
18939	chr1	168504201	168504750	+	0	NA	Intergenic	Intergenic	-8831	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
178835	chr4	153639901	153640300	+	0	NA	promoter-TSS (NR_134873)	promoter-TSS (NR_134873)	-68	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
46591	chr11	128519351	128519730	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	2770	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
187776	chr5	145947701	145947900	+	0	NA	intron (NM_152550, intron 2 of 9)	L2c|LINE|L2	11222	NM_152550	153769		NM_152550	ENSG00000156463	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
165295	chr3	80809051	80809150	+	0	NA	Intergenic	Intergenic	38396	NR_147145	105377175		NR_147143	ENSG00000242781	LINC02050	-	long intergenic non-protein coding RNA 2050	ncRNA
67005	chr14	67426721	67427680	+	0	NA	Intergenic	MIRc|SINE|MIR	14730	NR_049879	100847064		NR_049879	ENSG00000265993	MIR5694	-	microRNA 5694	ncRNA
66142	chr14	60248701	60250650	+	0	NA	5' UTR (NM_177951, exon 1 of 4)	5' UTR (NM_177951, exon 1 of 4)	454	NM_021003	5494		NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
120684	chr19	45150471	45151650	+	0	NA	3' UTR (NM_198478, exon 4 of 4)	3' UTR (NM_198478, exon 4 of 4)	9090	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
10970	chr1	84247401	84247800	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-50938	NM_001010971	148418		NM_001010971	ENSG00000203943	SAMD13	DJL|HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding
228167	chr9	97013101	97014430	+	0	NA	promoter-TSS (NM_001355230)	promoter-TSS (NM_001355230)	-83	NM_001355230	84278		NM_001355228	ENSG00000290770	MFSD14CP	HIATL2|MFSD14C	major facilitator superfamily domain containing 14C, pseudogene	pseudo
182988	chr5	72138801	72139230	+	0	NA	intron (NM_005909, intron 2 of 6)	intron (NM_005909, intron 2 of 6)	-30452	NR_039967	100616377		NR_039967	ENSG00000264099	MIR4803	-	microRNA 4803	ncRNA
29445	chr10	70405301	70406500	+	0	NA	intron (NM_004096, intron 1 of 2)	intron (NM_004096, intron 1 of 2)	1755	NM_004096	1979		NM_004096	ENSG00000148730	EIF4EBP2	4EBP2|PHASII	eukaryotic translation initiation factor 4E binding protein 2	protein-coding
18288	chr1	161129321	161129800	+	0	NA	intron (NM_001039711, intron 1 of 4)	intron (NM_001039711, intron 1 of 4)	2906	NM_001039712	9191		NM_004216	ENSG00000158796	DEDD	CASP8IP1|DEDD1|DEDPro1|DEFT|FLDED-1|FLDED1|KE05	death effector domain containing	protein-coding
161064	chr3	38037501	38038030	+	0	NA	Intergenic	Intergenic	-1440	NM_007337	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
61230	chr13	49683401	49683800	+	0	NA	intron (NM_032565, intron 1 of 3)	intron (NM_032565, intron 1 of 3)	7886	NM_032565	84650		NM_032565	ENSG00000123179	EBPL	EBRP	EBP like	protein-coding
216879	chr8	22644671	22645330	+	0	NA	intron (NR_156436, intron 1 of 9)	intron (NR_156436, intron 1 of 9)	-2791	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
107961	chr18	58321771	58322930	+	0	NA	intron (NM_001243960, intron 6 of 28)	intron (NM_001243960, intron 6 of 28)	100779	NM_001144966	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
213817	chr7	141072801	141073530	+	0	NA	promoter-TSS (NM_001195278)	promoter-TSS (NM_001195278)	-899	NM_001195278	100507421		NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
31467	chr10	96470171	96470480	+	0	NA	intron (NM_012465, intron 2 of 20)	intron (NM_012465, intron 2 of 20)	43601	NM_012465	7093		NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding
110981	chr19	2981371	2981930	+	0	NA	intron (NM_001143986, intron 4 of 16)	intron (NM_001143986, intron 4 of 16)	4086	NR_138612	79816		NM_024760	ENSG00000104953	TLE6	GRG6|OZEMA15|PREMBL	TLE family member 6, subcortical maternal complex member	protein-coding
163936	chr3	52705001	52707900	+	0	NA	promoter-TSS (NM_018446)	promoter-TSS (NM_018446)	344	NM_014041	28972		NM_014041	ENSG00000114902	SPCS1	HSPC033|SPC1|SPC12|YJR010C-A	signal peptidase complex subunit 1	protein-coding
105558	chr17	83216751	83217050	+	0	NA	Intergenic	CpG	-9997	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
25833	chr10	11215451	11215830	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	50610	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
182576	chr5	65958471	65958630	+	0	NA	intron (NM_001253697, intron 1 of 25)	SVA_C|Retroposon|SVA	-12977	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
131628	chr2	96972021	96972480	+	0	NA	exon (NM_001122646, exon 3 of 17)	exon (NM_001122646, exon 3 of 17)	14330	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
147826	chr20	62735001	62735750	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	26539	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
138425	chr2	205685351	205685650	+	0	NA	intron (NM_201264, intron 1 of 8)	CpG	2999	NM_201267	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
114989	chr19	14044121	14044380	+	0	NA	intron (NM_004843, intron 6 of 13)	AluSq2|SINE|Alu	12488	NM_004843	9466		NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
224898	chr9	32520771	32521130	+	0	NA	intron (NM_014314, intron 1 of 17)	AluSx|SINE|Alu	5246	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
75793	chr15	68824771	68824930	+	0	NA	Intergenic	AluJb|SINE|Alu	-3955	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
22499	chr1	221737651	221738980	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	-1415	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
126596	chr2	28773101	28773780	+	0	NA	intron (NM_206876, intron 2 of 8)	MIRc|SINE|MIR	21610	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
100916	chr17	64464621	64464880	+	0	NA	intron (NM_001085423, intron 5 of 9)	AluSx|SINE|Alu	15635	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
8663	chr1	41888501	41889480	+	0	NA	intron (NR_038260, intron 1 of 2)	(AC)n|Simple_repeat|Simple_repeat	29932	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
41374	chr11	65981801	65982880	+	0	NA	Intergenic	Intergenic	-19739	NM_001143985	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
119641	chr19	40807821	40808180	+	0	NA	TTS (NR_144551)	TTS (NR_144551)	3100	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
132754	chr2	109762151	109762250	+	0	NA	intron (NM_001384362, intron 2 of 22).2	intron (NM_001384362, intron 2 of 22).2	1528	NM_001384363	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
121339	chr19	46784301	46785280	+	0	NA	promoter-TSS (NM_001145145)	promoter-TSS (NM_001145145)	24	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
59671	chr13	28708151	28708250	+	0	NA	intron (NM_001347960, intron 4 of 5)	L1MB7|LINE|L1	10770	NM_181785	283537		NM_181785	ENSG00000139508	SLC46A3	FKSG16	solute carrier family 46 member 3	protein-coding
236249	chrX	65745451	65746180	+	0	NA	Intergenic	Intergenic	78161	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
24226	chr1	236144921	236145180	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	2511	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
7835	chr1	36317401	36317800	+	0	NA	intron (NM_024676, intron 7 of 12)	AluSq2|SINE|Alu	6045	NM_001304762	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
106247	chr18	11996871	11997030	+	0	NA	intron (NM_014214, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	15443	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
6609	chr1	28864371	28864530	+	0	NA	3' UTR (NM_000911, exon 3 of 3)	3' UTR (NM_000911, exon 3 of 3)	-22641	NM_203342	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
213311	chr7	135164471	135165080	+	0	NA	exon (NM_018295, exon 2 of 2)	exon (NM_018295, exon 2 of 2)	4699	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
142478	chr20	4563651	4563830	+	0	NA	Intergenic	L2b|LINE|L2	-122716	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
199090	chr6	111665621	111665880	+	0	NA	intron (NM_001370529, intron 11 of 11)	AluSz|SINE|Alu	-59476	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
77916	chr15	89245101	89245300	+	0	NA	intron (NM_001376911, intron 1 of 37)	AluSc|SINE|Alu	1221	NM_001376910	55215		NM_018193	ENSG00000140525	FANCI	KIAA1794	FA complementation group I	protein-coding
36892	chr11	10750721	10751880	+	0	NA	promoter-TSS (NM_014633)	promoter-TSS (NM_014633)	54	NM_014633	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
11616	chr1	91710871	91711230	+	0	NA	intron (NR_036634, intron 14 of 17)	intron (NR_036634, intron 14 of 17)	175101	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
36923	chr11	10806101	10807000	+	0	NA	intron (NM_001172705, intron 3 of 21)	intron (NM_001172705, intron 3 of 21)	1446	NM_001172705	1982		NM_001418	ENSG00000110321	EIF4G2	AAG1|DAP5|NAT1|P97	eukaryotic translation initiation factor 4 gamma 2	protein-coding
111059	chr19	3124071	3124430	+	0	NA	TTS (NM_002067)	TTS (NM_002067)	-11783	NM_002068	2769		NM_002068	ENSG00000060558	GNA15	GNA16|HG1L	G protein subunit alpha 15	protein-coding
106323	chr18	12933201	12933400	+	0	NA	Intergenic	Intergenic	-14684	NM_031216	81929		NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
129944	chr2	73832771	73833300	+	0	NA	intron (NR_148668, intron 2 of 12)	MER57C1|LTR|ERV1	4068	NM_006463	10617		NM_006463	ENSG00000124356	STAMBP	AMSH|MICCAP	STAM binding protein	protein-coding
37651	chr11	22638021	22638480	+	0	NA	Intergenic	Intergenic	-12427	NM_022725	2188		NM_022725	ENSG00000183161	FANCF	FAF	FA complementation group F	protein-coding
208728	chr7	73430001	73430450	+	0	NA	Intergenic	Intergenic	-3553	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
214082	chr7	143490851	143490950	+	0	NA	intron (NR_033897, intron 2 of 4)	intron (NR_033897, intron 2 of 4)	13027	NM_176883	259287		NM_176883	ENSG00000221855	TAS2R41	T2R41|T2R59	taste 2 receptor member 41	protein-coding
157549	chr22	45639171	45639330	+	0	NA	Intergenic	Intergenic	-32548	NM_001167621	25814		NM_013236	ENSG00000130638	ATXN10	ATX10|E46L|HUMEEP|SCA10	ataxin 10	protein-coding
132653	chr2	108737001	108737200	+	0	NA	intron (NM_006267, intron 6 of 28)	intron (NM_006267, intron 6 of 28)	17618	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
206044	chr7	27143001	27143200	+	0	NA	exon (NM_019102, exon 1 of 2)	exon (NM_019102, exon 1 of 2)	581	NM_019102	3202		NM_019102	ENSG00000106004	HOXA5	HOX1|HOX1.3|HOX1C	homeobox A5	protein-coding
191113	chr6	4025571	4025730	+	0	NA	intron (NR_146785, intron 1 of 20)	intron (NR_146785, intron 1 of 20)	4350	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
229194	chr9	114667001	114667200	+	0	NA	intron (NM_001199233, intron 4 of 4)	MIRc|SINE|MIR	-9295	NM_001354645	105376230		NM_001354645	ENSG00000230054	TEX53	-	testis expressed 53	protein-coding
211602	chr7	105857501	105857900	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	18885	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
20848	chr1	201832351	201832650	+	0	NA	intron (NM_018085, intron 1 of 23)	AluSz6|SINE|Alu	-2941	NR_046696	100873949		NR_046696	ENSG00000231871	IPO9-AS1	-	IPO9 antisense RNA 1	ncRNA
218253	chr8	42166451	42166750	+	0	NA	intron (NM_006803, intron 6 of 8)	AluJb|SINE|Alu	13537	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
92763	chr17	15502601	15503100	+	0	NA	3' UTR (NM_145301, exon 6 of 6)	3' UTR (NM_145301, exon 6 of 6)	-32014	NR_146601	94145		NR_146601		CDRT3	-	CMT1A duplicated region transcript 3	ncRNA
52840	chr12	57086251	57088100	+	0	NA	Intergenic	CpG	-1939	NM_001330305	4665		NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding
149916	chr21	36154401	36154850	+	0	NA	intron (NR_038892, intron 1 of 3)	AluSx|SINE|Alu	1683	NR_038893	100506428		NR_038892	ENSG00000236830	CBR3-AS1	PlncRNA-1|PlncRNA1	CBR3 antisense RNA 1	ncRNA
12414	chr1	101339751	101339850	+	0	NA	intron (NR_126402, intron 1 of 4)	intron (NR_126402, intron 1 of 4)	15963	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
195108	chr6	35616951	35617050	+	0	NA	intron (NM_001145775, intron 6 of 11)	MIR3|SINE|MIR	47789	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
132903	chr2	111402421	111402950	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	-81594	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
20141	chr1	192574051	192574730	+	0	NA	Intergenic	Intergenic	-1383	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
34321	chr10	132158151	132159300	+	0	NA	intron (NM_001323090, intron 19 of 23)	intron (NM_001323090, intron 19 of 23)	-28223	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
198183	chr6	96497351	96497850	+	0	NA	Intergenic	L1PA6|LINE|L1	-24206	NM_015323	23376		NM_015323	ENSG00000014123	UFL1	KIAA0776|Maxer|NLBP|RCAD	UFM1 specific ligase 1	protein-coding
68327	chr14	77582171	77582330	+	0	NA	intron (NM_004863, intron 2 of 11)	AluSx1|SINE|Alu	34387	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
211952	chr7	112484251	112485000	+	0	NA	intron (NM_182597, intron 1 of 3)	intron (NM_182597, intron 1 of 3)	3634	NM_182597	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
94222	chr17	28646431	28647930	+	0	NA	Intergenic	Intergenic	-2021	NM_001363827	9703		NM_014680	ENSG00000007202	BLTP2	BCOX|BCOX1|CT101|FMP27|Hob|KIAA0100	bridge-like lipid transfer protein family member 2	protein-coding
41	chr1	193771	194480	+	0	NA	Intergenic	Intergenic	-6167	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
136224	chr2	174590301	174590530	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	7389	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
40523	chr11	64289001	64289730	+	0	NA	exon (NM_001378088, exon 6 of 6)	exon (NM_001378088, exon 6 of 6)	-1937	NR_133660	50801		NM_016611	ENSG00000182450	KCNK4	FHEIG|K2p4.1|TRAAK|TRAAK1	potassium two pore domain channel subfamily K member 4	protein-coding
114548	chr19	12875651	12875950	+	0	NA	TTS (NM_014975)	TTS (NM_014975)	5649	NM_001375	1777		NM_001375	ENSG00000105612	DNASE2	AIPCS|DNASE2A|DNL|DNL2	deoxyribonuclease 2, lysosomal	protein-coding
190534	chr5	180658551	180658650	+	0	NA	Intergenic	(GGACAGAG)n|Simple_repeat|Simple_repeat	-9000	NM_002020	2324		NM_002020	ENSG00000037280	FLT4	CHTD7|FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3	fms related receptor tyrosine kinase 4	protein-coding
26252	chr10	14651751	14652250	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-47599	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
216846	chr8	22603471	22603630	+	0	NA	non-coding (NR_160769, exon 1 of 1)	non-coding (NR_160769, exon 1 of 1)	-1207	NM_001363069	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
51734	chr12	53225251	53225950	+	0	NA	intron (NM_001243730, intron 2 of 8)	intron (NM_001243730, intron 2 of 8)	-5238	NM_001243732	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
228239	chr9	97930951	97931680	+	0	NA	intron (NM_018437, intron 3 of 4)	MIR3|SINE|MIR	6857	NM_197978	55363		NM_018437	ENSG00000136929	HEMGN	CT155|EDAG|EDAG-1|NDR	hemogen	protein-coding
169394	chr3	160562051	160562150	+	0	NA	intron (NM_002268, intron 1 of 16)	intron (NM_002268, intron 1 of 16)	3471	NM_002268	3840		NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
19227	chr1	172565901	172566400	+	0	NA	intron (NM_001282751, intron 6 of 21)	MER66-int|LTR|ERV1	33000	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
229929	chr9	126635801	126636300	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	22122	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
168605	chr3	149290971	149291430	+	0	NA	Intergenic	MER52-int|LTR|ERV1	42238	NM_001184723	116441		NM_138786	ENSG00000163762	TM4SF18	L6D	transmembrane 4 L six family member 18	protein-coding
33845	chr10	124228401	124228930	+	0	NA	Intergenic	Intergenic	-135067	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
161408	chr3	41239051	41240130	+	0	NA	3' UTR (NM_001904, exon 15 of 15)	3' UTR (NM_001904, exon 15 of 15)	40085	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
60948	chr13	46530951	46531050	+	0	NA	Intergenic	Intergenic	-22170	NM_015116	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
233763	chrX	1401821	1402080	+	0	NA	non-coding (NR_026711, exon 2 of 6)	non-coding (NR_026711, exon 2 of 6)	1419	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
180321	chr5	6359721	6360700	+	0	NA	Intergenic	Intergenic	18337	NM_032286	84246		NM_032286	ENSG00000133398	MED10	L6|NUT2|TRG20	mediator complex subunit 10	protein-coding
187749	chr5	143828321	143828980	+	0	NA	Intergenic	MIRc|SINE|MIR	16489	NM_021182	57824		NM_021182	ENSG00000158497	HMHB1	HB-1|HB-1Y|HLA-HB1	histocompatibility minor HB-1	protein-coding
113281	chr19	8532851	8533150	+	0	NA	intron (NM_012335, intron 19 of 27)	intron (NM_012335, intron 19 of 27)	-18833	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
80407	chr16	2601471	2601630	+	0	NA	3' UTR (NM_001261816, exon 12 of 12)	3' UTR (NM_001261816, exon 12 of 12)	-1834	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
206922	chr7	38220271	38220980	+	0	NA	intron (NM_032016, intron 7 of 8)	L1MB3|LINE|L1	42380	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
112328	chr19	5910371	5910530	+	0	NA	3' UTR (NM_001017921, exon 2 of 2)	3' UTR (NM_001017921, exon 2 of 2)	-3804	NM_004058	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
18106	chr1	160702071	160702700	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK11-int|LTR|ERVK	9437	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
165413	chr3	97968371	97968730	+	0	NA	intron (NM_001261829, intron 1 of 9)	MER5A1|DNA|hAT-Charlie	3881	NM_153182	84864		NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
26434	chr10	17241551	17242050	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11815	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
140777	chr2	235501271	235501700	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	-4266	NR_131900	100506749		NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA
162884	chr3	49381971	49382130	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluY|SINE|Alu	-23450	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
15123	chr1	148676421	148676950	+	0	NA	intron (NM_001364007, intron 1 of 4)	intron (NM_001364007, intron 1 of 4)	3061	NM_001364007	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
186159	chr5	134180171	134181880	+	0	NA	Intergenic	MamGypLTR2b|LTR|Gypsy	-3992	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
164015	chr3	53193701	53194250	+	0	NA	Intergenic	Intergenic	25272	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
168955	chr3	152377921	152378200	+	0	NA	intron (NM_001376837, intron 2 of 9)	AluJr|SINE|Alu	-37070	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
96256	chr17	39846251	39846550	+	0	NA	intron (NM_183231, intron 1 of 5)	intron (NM_183231, intron 1 of 5)	17788	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
39908	chr11	62514221	62514880	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	31114	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
7537	chr1	34871301	34871700	+	0	NA	intron (NM_001080418, intron 8 of 11)	intron (NM_001080418, intron 8 of 11)	-11751	NM_001320261	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
97453	chr17	43673671	43674300	+	0	NA	Intergenic	Intergenic	-12063	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
129022	chr2	64882901	64883100	+	0	NA	Intergenic	Intergenic	-19369	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
191736	chr6	13725351	13726030	+	0	NA	Intergenic	Intergenic	-13855	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
59520	chr13	27147451	27148380	+	0	NA	intron (NR_046547, intron 1 of 2)	AluJr|SINE|Alu	22382	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
171305	chr3	195958571	195959200	+	0	NA	Intergenic	LTR16C|LTR|ERVL	31394	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
15788	chr1	151212021	151212950	+	0	NA	intron (NM_001135637, intron 1 of 13)	intron (NM_001135637, intron 1 of 13)	13933	NM_003557	8394		NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein-coding
126568	chr2	28680171	28680330	+	0	NA	Intergenic	AluJb|SINE|Alu	55955	NR_145832	100505774		NR_145832	ENSG00000226833	LOC100505774	-	uncharacterized LOC100505774	ncRNA
14463	chr1	144462571	144462950	+	0	NA	Intergenic	LTR71B|LTR|ERV1	-1091	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
227819	chr9	93304971	93305130	+	0	NA	intron (NM_001282394, intron 26 of 29)	intron (NM_001282394, intron 26 of 29)	41253	NR_166069	445577		NM_001098808		FAM120A2P	C9orf129|bA165J3.3	family with sequence similarity 120A2, pseudogene	pseudo
157988	chr22	49848401	49849780	+	0	NA	Intergenic	CpG	-4754	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
3257	chr1	14363971	14364130	+	0	NA	intron (NR_149058, intron 3 of 4)	intron (NR_149058, intron 3 of 4)	55923	NR_149058	105376762		NR_149058	ENSG00000234593	KAZN-AS1	-	KAZN antisense RNA 1	ncRNA
224866	chr9	31272271	31272430	+	0	NA	Intergenic	AluY|SINE|Alu	109140	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
76159	chr15	72771021	72771280	+	0	NA	intron (NM_001365224, intron 1 of 4)	intron (NM_001365224, intron 1 of 4)	-11685	NR_040107	100287559		NR_040107	ENSG00000260898	ADPGK-AS1	-	ADPGK antisense RNA 1	ncRNA
99278	chr17	49753771	49754280	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	10106	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
123712	chr19	55038171	55038580	+	0	NA	promoter-TSS (NM_001256017).2	promoter-TSS (NM_001256017).2	-111	NM_001256017	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
106029	chr18	8608871	8611650	+	0	NA	intron (NM_001025300, intron 1 of 5)	CpG	815	NM_001025300	201475		NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding
111353	chr19	3670101	3670300	+	0	NA	intron (NM_001300849, intron 1 of 16)	intron (NM_001300849, intron 1 of 16)	30268	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
152776	chr22	21807501	21807700	+	0	NA	intron (NM_138957, intron 2 of 7)	intron (NM_138957, intron 2 of 7)	60045	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
42082	chr11	67499651	67499750	+	0	NA	intron (NM_001130848, intron 8 of 23)	intron (NM_001130848, intron 8 of 23)	5663	NM_004910	9600		NM_004910	ENSG00000110697	PITPNM1	DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9	phosphatidylinositol transfer protein membrane associated 1	protein-coding
236027	chrX	55159571	55159950	+	0	NA	intron (NM_001166699, intron 1 of 3)	intron (NM_001166699, intron 1 of 3)	1342	NM_001166703	90736		NM_138362	ENSG00000182518	VCF2	CXorf44|FAM104B	VCP nuclear cofactor family member 2	protein-coding
94714	chr17	30711901	30712550	+	0	NA	intron (NR_144394, intron 1 of 8)	intron (NR_144394, intron 1 of 8)	2617	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
65933	chr14	55353671	55354120	+	0	NA	TTS (NM_152231)	TTS (NM_152231)	57935	NM_014924	22863		NM_014924	ENSG00000126775	ATG14	ATG14L|BARKOR|KIAA0831	autophagy related 14	protein-coding
177493	chr4	114070821	114071200	+	0	NA	Intergenic	AluYh3|SINE|Alu	-91363	NM_024590	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
64048	chr14	22535971	22536280	+	0	NA	Intergenic	Intergenic	20937	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
168861	chr3	152284571	152285580	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-13939	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
60771	chr13	45120301	45120950	+	0	NA	5' UTR (NM_004128, exon 1 of 8)	5' UTR (NM_004128, exon 1 of 8)	115	NM_004128	2963		NM_004128	ENSG00000188342	GTF2F2	BTF4|RAP30|TF2F2|TFIIF	general transcription factor IIF subunit 2	protein-coding
113000	chr19	7901851	7902280	+	0	NA	TTS (NM_025061)	TTS (NM_025061)	-1812	NM_001297556	5609		NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
203501	chr7	609201	609800	+	0	NA	TTS (NR_110054)	TTS (NR_110054)	6102	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
232302	chr9	134471471	134472380	+	0	NA	Intergenic	Intergenic	65365	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
94675	chr17	30380971	30381500	+	0	NA	intron (NM_001199775, intron 1 of 20)	intron (NM_001199775, intron 1 of 20)	757	NM_001199775	1362		NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
233664	chrX	1052571	1052930	+	0	NA	Intergenic	L1MB3|LINE|L1	159899	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
109777	chr19	1137421	1139150	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	-6064	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
121033	chr19	45810421	45810680	+	0	NA	intron (NM_030785, intron 2 of 5)	intron (NM_030785, intron 2 of 5)	4758	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
52134	chr12	54209471	54209830	+	0	NA	Intergenic	AluY|SINE|Alu	-20656	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
37359	chr11	15074531	15075550	+	0	NA	intron (NM_000728, intron 2 of 4)	intron (NM_000728, intron 2 of 4)	1447	NM_000728	797		NM_000728	ENSG00000175868	CALCB	CALC2|CGRP-II|CGRP2	calcitonin related polypeptide beta	protein-coding
48333	chr12	9064021	9065600	+	0	NA	promoter-TSS (NR_026971)	promoter-TSS (NR_026971)	260	NR_034140	253128		NM_182550	ENSG00000214851	LINC00612	C12orf33	long intergenic non-protein coding RNA 612	ncRNA
185537	chr5	131349201	131349900	+	0	NA	intron (NM_001375633, intron 2 of 5)	Tigger2b_Pri|DNA|TcMar-Tigger	85497	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
86467	chr16	66945621	66946000	+	0	NA	TTS (NM_001365408)	TTS (NM_001365408)	10294	NM_198061	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
56027	chr12	110429551	110429880	+	0	NA	Intergenic	Intergenic	20622	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
61954	chr13	79382251	79383200	+	0	NA	intron (NM_022118, intron 1 of 20)	L3|LINE|CR1	23496	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
176244	chr4	86922471	86923130	+	0	NA	Intergenic	LTR41C|LTR|ERVL	12050	NR_038841	100506746		NR_038841		AFF1-AS1	-	AFF1 antisense RNA 1	ncRNA
104615	chr17	81421521	81421780	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-20872	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
228148	chr9	96876951	96877500	+	0	NA	Intergenic	Intergenic	8325	NR_038890	100132781		NR_038890		LOC100132781	-	cyclin Y like 1 pseudogene	pseudo
34629	chr10	133306601	133306900	+	0	NA	intron (NR_046330, intron 1 of 17)	AluY|SINE|Alu	2122	NM_006659	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
104488	chr17	81130651	81131180	+	0	NA	intron (NM_001080395, intron 3 of 13)	intron (NM_001080395, intron 3 of 13)	1033	NM_004920	9625		NM_004920	ENSG00000181409	AATK	AATYK|AATYK1|LMR1|LMTK1|PPP1R77|p35BP	apoptosis associated tyrosine kinase	protein-coding
142795	chr20	13638521	13639450	+	0	NA	promoter-TSS (NM_001323604)	promoter-TSS (NM_001323604)	-49	NM_001323602	55617		NM_017714	ENSG00000089123	TASP1	C20orf13|SULEHS|dJ585I14.2	taspase 1	protein-coding
24514	chr1	244665571	244666150	+	0	NA	intron (NM_001297746, intron 1 of 3)	intron (NM_001297746, intron 1 of 3)	12734	NM_001297746	51029		NM_016076	ENSG00000121644	DESI2	C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
152465	chr22	20708221	20708580	+	0	NA	intron (NM_001362863, intron 53 of 53)	intron (NM_001362863, intron 53 of 53)	7286	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
62221	chr13	98511401	98512000	+	0	NA	intron (NM_003576, intron 2 of 10)	L1MD1|LINE|L1	10425	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
143544	chr20	31584651	31584950	+	0	NA	Intergenic	AluSz|SINE|Alu	-11537	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
10472	chr1	66341321	66341780	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	9442	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
108005	chr18	58697171	58698000	+	0	NA	intron (NM_173844, intron 3 of 15)	intron (NM_173844, intron 3 of 15)	-25712	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
171960	chr4	899951	900600	+	0	NA	intron (NM_001318134, intron 2 of 24)	CpG	32041	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
145898	chr20	45961651	45962050	+	0	NA	intron (NM_022095, intron 10 of 27)	intron (NM_022095, intron 10 of 27)	10353	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
189003	chr5	168481451	168481830	+	0	NA	Intergenic	Intergenic	-4831	NM_002887	5917		NM_002887	ENSG00000113643	RARS1	ArgRS|DALRD1|HLD9|RARS	arginyl-tRNA synthetase 1	protein-coding
166629	chr3	119579521	119580650	+	0	NA	intron (NM_001291950, intron 1 of 2)	CpG	593	NM_001371092	141		NM_001125	ENSG00000144843	ADPRH	ARH1|hARH1	ADP-ribosylarginine hydrolase	protein-coding
211819	chr7	108135521	108136100	+	0	NA	Intergenic	Intergenic	-5449	NM_001318047	22798		NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
31294	chr10	92589251	92589550	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3730	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
14599	chr1	145239901	145240750	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	1874	NM_001164262	728945		NM_001164262	ENSG00000279782	PPIAL4F	-	peptidylprolyl isomerase A like 4F	protein-coding
123831	chr19	55222421	55222950	+	0	NA	Intergenic	AluSx|SINE|Alu	6078	NM_001372013	255043		NM_173804	ENSG00000180089	TMEM86B	-	transmembrane protein 86B	protein-coding
45715	chr11	119089101	119089500	+	0	NA	intron (NM_000190, intron 5 of 13)	intron (NM_000190, intron 5 of 13)	1313	NM_001024382	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
191532	chr6	11386321	11386650	+	0	NA	Intergenic	Intergenic	-4137	NR_073131	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
5839	chr1	26707201	26707550	+	0	NA	intron (NM_139135, intron 1 of 19)	AluSg|SINE|Alu	11360	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
138316	chr2	203747621	203747880	+	0	NA	Intergenic	AluSg|SINE|Alu	41111	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123516	chr19	54219301	54219730	+	0	NA	intron (NR_135496, intron 8 of 13).4	intron (NR_135496, intron 8 of 13).4	3492	NR_135494	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
45674	chr11	119032921	119033380	+	0	NA	Intergenic	AluSz|SINE|Alu	-2244	NM_001164277	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
59379	chr13	24745901	24746100	+	0	NA	Intergenic	CpG	-18169	NM_001184993	56163		NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
55753	chr12	108514721	108515850	+	0	NA	promoter-TSS (NM_007076)	promoter-TSS (NM_007076)	8	NM_007076	11153		NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain protein adenylyltransferase	protein-coding
234785	chrX	23998151	23998250	+	0	NA	intron (NM_030624, intron 3 of 3)	AluSg|SINE|Alu	28986	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
152572	chr22	21117621	21117900	+	0	NA	intron (NR_037566, intron 3 of 5)	intron (NR_037566, intron 3 of 5)	14744	NR_037566	400892		NM_207474	ENSG00000291044	BCRP2	BCR-2|BCR2|BCRL2	BCR pseudogene 2	pseudo
220378	chr8	100149671	100151400	+	0	NA	promoter-TSS (NM_005034)	promoter-TSS (NM_005034)	-101	NM_005034	5440		NM_005034	ENSG00000147669	POLR2K	ABC10-alpha|RPABC4|RPB10alpha|RPB12|RPB7.0|hRPB7.0|hsRPB10a	RNA polymerase II, I and III subunit K	protein-coding
93233	chr17	17848721	17849700	+	0	NA	intron (NM_001288788, intron 10 of 11)	intron (NM_001288788, intron 10 of 11)	-12199	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
128998	chr2	64770801	64771000	+	0	NA	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	92731	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
218889	chr8	60650721	60650980	+	0	NA	Intergenic	Intergenic	-27890	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
216391	chr8	17927821	17929280	+	0	NA	intron (NR_148032, intron 2 of 38)	L2|LINE|L2	5562	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
12889	chr1	110341571	110342350	+	0	NA	exon (NM_001201545, exon 1 of 2)	exon (NM_001201545, exon 1 of 2)	2583	NM_022768	64783		NM_014092	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding
117033	chr19	18926871	18927230	+	0	NA	intron (NM_019070, intron 10 of 12)	AluSz6|SINE|Alu	7335	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
15316	chr1	149866121	149866380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5091	NM_003548	8370		NM_003548	ENSG00000270882	H4C14	FO108|H4|H4-16|H4/n|H4C1|H4C11|H4C12|H4C13|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2|H4FN|HIST2H4|HIST2H4A	H4 clustered histone 14	protein-coding
131386	chr2	96254451	96254750	+	0	NA	intron (NM_017849, intron 3 of 3)	intron (NM_017849, intron 3 of 3)	11397	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
127353	chr2	39130521	39130980	+	0	NA	Intergenic	AluJb|SINE|Alu	-5882	NM_001382394	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
154338	chr22	32206001	32206300	+	0	NA	intron (NR_149072, intron 1 of 3)	REP522|Satellite|telo	1035	NR_149072	110806273		NR_149072	ENSG00000242082	SLC5A4-AS1	-	SLC5A4 antisense RNA 1	ncRNA
199523	chr6	118721421	118722080	+	0	NA	Intergenic	Intergenic	-11675	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
66218	chr14	61319601	61320250	+	0	NA	Intergenic	Intergenic	-1518	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
196720	chr6	45071621	45071880	+	0	NA	intron (NM_001350327, intron 2 of 9)	intron (NM_001350327, intron 2 of 9)	126020	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
45927	chr11	120957001	120957400	+	0	NA	intron (NM_001282473, intron 16 of 17)	intron (NM_001282473, intron 16 of 17)	839	NR_133004	101929208		NR_133004		LOC101929208	-	uncharacterized LOC101929208	ncRNA
89605	chr16	89295121	89295530	+	0	NA	promoter-TSS (NR_136339)	promoter-TSS (NR_136339)	-803	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
22563	chr1	222643721	222645100	+	0	NA	5' UTR (NM_001324065, exon 1 of 24)	5' UTR (NM_001324065, exon 1 of 24)	107	NM_001300867	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
220651	chr8	101111771	101112130	+	0	NA	Intergenic	Intergenic	58289	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
178445	chr4	147984021	147984380	+	0	NA	intron (NM_024605, intron 18 of 22)	intron (NM_024605, intron 18 of 22)	201605	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
210604	chr7	100428801	100431930	+	0	NA	exon (NM_019606, exon 1 of 4)	exon (NM_019606, exon 1 of 4)	534	NM_019606	56257		NM_019606	ENSG00000146834	MEPCE	BCDIN3	methylphosphate capping enzyme	protein-coding
171648	chr3	197631501	197632400	+	0	NA	Intergenic	LTR13|LTR|ERVK	-4069	NR_003266	220729		NR_003266	ENSG00000291091	SDHAP4	-	SDHA pseudogene 4	pseudo
145866	chr20	45931701	45932100	+	0	NA	Intergenic	AluSp|SINE|Alu	-2783	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
146334	chr20	49235771	49235930	+	0	NA	intron (NM_017895, intron 12 of 20)	AluY|SINE|Alu	16434	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
58773	chr12	132713051	132713150	+	0	NA	intron (NM_001170544, intron 1 of 5)	AluSz|SINE|Alu	2258	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
7167	chr1	32250901	32252100	+	0	NA	intron (NM_005356, intron 1 of 12)	intron (NM_005356, intron 1 of 12)	235	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
182772	chr5	68344521	68345140	+	0	NA	Intergenic	Intergenic	52253	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
88838	chr16	87494701	87494980	+	0	NA	intron (NR_110943, intron 1 of 3)	AluJb|SINE|Alu	653	NR_110943	101928737		NR_110943	ENSG00000288568	ZCCHC14-DT	-	ZCCHC14 divergent transcript	ncRNA
119975	chr19	41900371	41900900	+	0	NA	intron (NM_004706, intron 14 of 28)	intron (NM_004706, intron 14 of 28)	16192	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
237581	chrX	123732511	123733830	+	0	NA	promoter-TSS (NM_001081550)	promoter-TSS (NM_001081550)	-118	NM_001081550	57187		NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|XLID12|dJ506G2.1|hTREX120	THO complex subunit 2	protein-coding
130060	chr2	74461171	74462150	+	0	NA	TTS (NR_037849)	TTS (NR_037849)	3222	NM_012477	23559		NM_012477	ENSG00000239779	WBP1	WBP-1	WW domain binding protein 1	protein-coding
146001	chr20	46438101	46438430	+	0	NA	intron (NR_146919, intron 3 of 3)	intron (NR_146919, intron 3 of 3)	19378	NR_045983	100130934		NM_173643		ZNF663P	ZNF663	zinc finger protein 663, pseudogene	pseudo
1797	chr1	6178901	6179600	+	0	NA	intron (NM_015557, intron 1 of 41)	CpG	1071	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
126792	chr2	30324401	30324800	+	0	NA	Intergenic	MIRc|SINE|MIR	-22046	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
179673	chr4	190020151	190020250	+	0	NA	Intergenic	Intergenic	7056	NM_001005217	448831		NM_001005217	ENSG00000205097	FRG2	FRG2A	FSHD region gene 2	protein-coding
189309	chr5	172139971	172140750	+	0	NA	intron (NM_005990, intron 2 of 18)	L1MB1|LINE|L1	47864	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
51970	chr12	53938251	53938700	+	0	NA	promoter-TSS (NM_017410)	promoter-TSS (NM_017410)	-356	NM_017410	3229		NM_017410	ENSG00000123364	HOXC13	ECTD9|HOX3|HOX3G	homeobox C13	protein-coding
88131	chr16	81615601	81615800	+	0	NA	intron (NM_030629, intron 2 of 20)	(TG)n|Simple_repeat|Simple_repeat	4352	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
128966	chr2	64646221	64646800	+	0	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	7403	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
156000	chr22	39929801	39930080	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	3336	NM_001291828	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
236138	chrX	63209351	63209650	+	0	NA	Intergenic	L1PA17|LINE|L1	141832	NM_001012968	139886		NM_001012968	ENSG00000186767	SPIN4	LJBS|TDRD28	spindlin family member 4	protein-coding
210954	chr7	101362801	101363200	+	0	NA	5' UTR (NM_001278563, exon 1 of 13)	5' UTR (NM_001278563, exon 1 of 13)	125	NM_001278563	136227		NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen type XXVI alpha 1 chain	protein-coding
220901	chr8	106591801	106592000	+	0	NA	intron (NM_001198532, intron 2 of 15)	intron (NM_001198532, intron 2 of 15)	-65908	NM_181354	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
127059	chr2	37343371	37343800	+	0	NA	Intergenic	Intergenic	-1045	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
56199	chr12	111449501	111449930	+	0	NA	3' UTR (NM_001291424, exon 7 of 7)	3' UTR (NM_001291424, exon 7 of 7)	14853	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
84208	chr16	29876121	29877030	+	0	NA	intron (NM_001114099, intron 12 of 16)	CpG	12741	NR_015396	440356		NR_015396	ENSG00000293487	CDIPTOSP	CDIPT-AS1|lnc-CTHCC	CDIP transferase opposite strand, pseudogene	ncRNA
48654	chr12	10425451	10425950	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-5105	NM_007333	3823		NM_002261	ENSG00000205810	KLRC3	NKG2-E|NKG2E	killer cell lectin like receptor C3	protein-coding
109799	chr19	1154551	1154650	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	19668	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
117339	chr19	19528901	19529280	+	0	NA	TTS (NM_015965)	TTS (NM_015965)	179	NM_198537	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
134111	chr2	134118301	134118850	+	0	NA	Intergenic	Intergenic	-1360	NM_001371457	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
75438	chr15	65806051	65806680	+	0	NA	Intergenic	Intergenic	-14072	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
98019	chr17	45394121	45394380	+	0	NA	non-coding (NR_169610, exon 18 of 18)	non-coding (NR_169610, exon 18 of 18)	16136	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
160178	chr3	23457701	23458100	+	0	NA	intron (NM_001370225, intron 3 of 5)	Tigger1|DNA|TcMar-Tigger	254573	NM_001370228	7325		NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
179774	chr5	316671	317480	+	0	NA	intron (NR_165159, intron 3 of 13)	intron (NR_165159, intron 3 of 13)	-4639	NM_001377236	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
238286	chrX	149478721	149479430	+	0	NA	3' UTR (NM_000202, exon 9 of 9)	3' UTR (NM_000202, exon 9 of 9)	26231	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
168348	chr3	141883201	141883600	+	0	NA	intron (NM_001679, intron 1 of 6)	AluJb|SINE|Alu	6757	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
91163	chr17	3787621	3787880	+	0	NA	intron (NM_002208, intron 1 of 30)	AluSx1|SINE|Alu	13438	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
146280	chr20	49102971	49103130	+	0	NA	Intergenic	Intergenic	56738	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
173669	chr4	14877271	14878180	+	0	NA	intron (NR_126435, intron 1 of 6)	intron (NR_126435, intron 1 of 6)	10444	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
85220	chr16	47523321	47523600	+	0	NA	intron (NM_001031835, intron 7 of 31)	L1M4|LINE|L1	62129	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
136409	chr2	176157651	176158150	+	0	NA	intron (NM_006898, intron 1 of 3)	intron (NM_006898, intron 1 of 3)	593	NM_006898	3232		NM_006898	ENSG00000128652	HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding
206407	chr7	32205451	32205550	+	0	NA	intron (NM_001322058, intron 2 of 17)	LTR12_|LTR|ERV1	93828	NM_001191058	5137		NM_005020	ENSG00000154678	PDE1C	DFNA74|Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding
368	chr1	1028651	1029250	+	0	NA	intron (NM_198576, intron 2 of 35)	CpG	-5043	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
112686	chr19	7052421	7053000	+	0	NA	TTS (NM_144614)	TTS (NM_144614)	3370	NM_144614	125997		NM_144614	ENSG00000230522	MBD3L2	-	methyl-CpG binding domain protein 3 like 2	protein-coding
210703	chr7	100579651	100580000	+	0	NA	intron (NM_001289934, intron 4 of 17)	L2c|LINE|L2	-4606	NM_001289933								
212180	chr7	116988471	116988630	+	0	NA	intron (NR_161422, intron 1 of 14)	intron (NR_161422, intron 1 of 14)	-26362	NM_001369602	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
49568	chr12	26935351	26936330	+	0	NA	intron (NM_018164, intron 2 of 16)	intron (NM_018164, intron 2 of 16)	2141	NM_018164	55726		NM_018164	ENSG00000064102	INTS13	ASUN|C12orf11|GCT1|Mat89Bb|NET48|SPATA30	integrator complex subunit 13	protein-coding
227602	chr9	92716401	92717280	+	0	NA	intron (NM_001003800, intron 6 of 6)	intron (NM_001003800, intron 6 of 6)	-46709	NM_022755	64768		NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
192250	chr6	20208821	20209230	+	0	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	3444	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
122157	chr19	48883901	48885730	+	0	NA	intron (NM_003323, intron 9 of 12)	intron (NM_003323, intron 9 of 12)	12423	NM_014330	23645		NM_014330	ENSG00000087074	PPP1R15A	GADD34	protein phosphatase 1 regulatory subunit 15A	protein-coding
60537	chr13	41456501	41458600	+	0	NA	promoter-TSS (NM_014059)	promoter-TSS (NM_014059)	0	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
49739	chr12	31682071	31682630	+	0	NA	intron (NR_103522, intron 7 of 8)	LTR55|LTR|ERVL?	22662	NM_001135863	254013		NM_173802	ENSG00000139160	ETFBKMT	C12orf72|ETFB-KMT|METTL20	electron transfer flavoprotein subunit beta lysine methyltransferase	protein-coding
38810	chr11	47289751	47290450	+	0	NA	intron (NR_164842, intron 17 of 33)	intron (NR_164842, intron 17 of 33)	-17990	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
173580	chr4	10157701	10158050	+	0	NA	Intergenic	Intergenic	-41076	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
231216	chr9	129958471	129959480	+	0	NA	intron (NM_001363755, intron 4 of 15)	AluJo|SINE|Alu	84214	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
150469	chr21	42545421	42545680	+	0	NA	intron (NM_018964, intron 9 of 20)	intron (NM_018964, intron 9 of 20)	31698	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
70443	chr14	102048771	102049150	+	0	NA	intron (NM_001376, intron 74 of 77)	intron (NM_001376, intron 74 of 77)	38084	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
156281	chr22	40457751	40458650	+	0	NA	intron (NM_001282661, intron 4 of 13)	intron (NM_001282661, intron 4 of 13)	5240	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
140799	chr2	236164021	236164280	+	0	NA	Intergenic	CpG	4236	NM_001301687	2637		NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
21854	chr1	207458001	207458200	+	0	NA	intron (NM_001877, intron 1 of 18)	L2a|LINE|L2	3772	NM_001006658	1380		NM_001877	ENSG00000117322	CR2	C3DR|CD21|CR|CVID7|SLEB9	complement C3d receptor 2	protein-coding
155737	chr22	39148321	39149350	+	0	NA	intron (NM_001346743, intron 2 of 5)	intron (NM_001346743, intron 2 of 5)	3845	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
227952	chr9	94727971	94728130	+	0	NA	intron (NM_001193331, intron 1 of 7)	MIRb|SINE|MIR	1351	NM_001193331	84909		NM_032823	ENSG00000148120	AOPEP	AP-O|APO|C90RF3|C9orf3|DYT31|ONPEP	aminopeptidase O (putative)	protein-coding
73903	chr15	50683621	50684750	+	0	NA	intron (NR_149152, intron 1 of 38)	AluSx|SINE|Alu	2612	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
187465	chr5	142130821	142131080	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	22171	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
46986	chr12	31151	31530	+	0	NA	intron (NR_130745, intron 1 of 10)	CpG	675	NR_130745	100288778		NR_130745	ENSG00000226210	WASH8P	-	WAS protein family homolog 8, pseudogene	pseudo
83538	chr16	27639951	27640050	+	0	NA	intron (NM_015202, intron 5 of 27)	intron (NM_015202, intron 5 of 27)	79029	NR_147898	100128079		NR_147898		LOC100128079	-	uncharacterized LOC100128079	ncRNA
125258	chr2	10431651	10433530	+	0	NA	Intergenic	CpG	14259	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
106296	chr18	12842321	12842780	+	0	NA	intron (NM_080422, intron 2 of 9)	L2a|LINE|L2	-1588	NM_001308287	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
124002	chr19	55457251	55457550	+	0	NA	intron (NM_024710, intron 1 of 5)	AluSx1|SINE|Alu	4242	NM_001136201	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
101763	chr17	72726351	72726450	+	0	NA	intron (NM_001352691, intron 8 of 10)	AluJr|SINE|Alu	-85928	NR_033876	400619		NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
39162	chr11	57326721	57326980	+	0	NA	exon (NM_003146, exon 16 of 17)	exon (NM_003146, exon 16 of 17)	-1898	NM_033396	85456		NM_033396	ENSG00000149115	TNKS1BP1	CNOT12|TAB182	tankyrase 1 binding protein 1	protein-coding
144791	chr20	36638521	36638950	+	0	NA	intron (NM_175077, intron 2 of 7)	intron (NM_175077, intron 2 of 7)	7461	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
238764	chrX	154354101	154354300	+	0	NA	exon (NM_001456, exon 33 of 47)	exon (NM_001456, exon 33 of 47)	20434	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
121682	chr19	47509471	47510300	+	0	NA	intron (NR_038456, intron 1 of 11)	intron (NR_038456, intron 1 of 11)	5178	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
93315	chr17	18176851	18178080	+	0	NA	intron (NM_016239, intron 64 of 64)	MIRb|SINE|MIR	-6363	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
8846	chr1	43360321	43360900	+	0	NA	intron (NM_001255, intron 7 of 10)	intron (NM_001255, intron 7 of 10)	1629	NM_001255	991		NM_001255	ENSG00000117399	CDC20	CDC20A|OOMD14|OZEMA14|bA276H19.3|p55CDC	cell division cycle 20	protein-coding
5802	chr1	26564071	26564230	+	0	NA	intron (NM_001006665, intron 16 of 20)	AluSz6|SINE|Alu	9608	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
154461	chr22	35538551	35539100	+	0	NA	intron (NM_001376515, intron 1 of 2)	intron (NM_001376515, intron 1 of 2)	-1075	NM_001376516	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
38458	chr11	45385271	45386230	+	0	NA	intron (NR_122071, intron 3 of 4)	MIRb|SINE|MIR	14353	NR_122071	399886		NR_122071	ENSG00000255267	LINC02687	-	long intergenic non-protein coding RNA 2687	ncRNA
14825	chr1	146305451	146305830	+	0	NA	Intergenic	Intergenic	7649	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
7586	chr1	35184201	35184850	+	0	NA	exon (NM_005066, exon 10 of 10)	exon (NM_005066, exon 10 of 10)	8620	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
144460	chr20	35568471	35569130	+	0	NA	intron (NR_119376, intron 35 of 42)	L2a|LINE|L2	26722	NM_015966	51614		NM_015966	ENSG00000125991	ERGIC3	C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2	ERGIC and golgi 3	protein-coding
114710	chr19	13155801	13157500	+	0	NA	Intergenic	Intergenic	6239	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
40202	chr11	63212651	63212950	+	0	NA	intron (NM_199352, intron 4 of 8)	L1PA4|LINE|L1	16852	NM_199352	387601		NM_199352	ENSG00000196600	SLC22A25	HIMTP|UST6	solute carrier family 22 member 25	protein-coding
154790	chr22	36808821	36809080	+	0	NA	intron (NM_001315532, intron 3 of 3)	intron (NM_001315532, intron 3 of 3)	8085	NM_001315532	5816		NM_002854	ENSG00000100362	PVALB	D22S749	parvalbumin	protein-coding
126547	chr2	28607151	28607450	+	0	NA	intron (NM_153021, intron 43 of 57)	intron (NM_153021, intron 43 of 57)	40943	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
160062	chr3	18657851	18658230	+	0	NA	Intergenic	Intergenic	-212448	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
102611	chr17	75942501	75942700	+	0	NA	3' UTR (NM_007292, exon 14 of 14)	3' UTR (NM_007292, exon 14 of 14)	-4368	NM_001319193	85302		NM_001080542	ENSG00000188878	FBF1	Alb|FBF-1	Fas binding factor 1	protein-coding
128612	chr2	61144651	61145750	+	0	NA	promoter-TSS (NM_001367071)	promoter-TSS (NM_001367071)	84	NM_001367070	339804		NM_001143959	ENSG00000237651	C2orf74	-	chromosome 2 open reading frame 74	protein-coding
83769	chr16	28725721	28725980	+	0	NA	intron (NM_001286478, intron 13 of 20)	AluSx1|SINE|Alu	1598	NR_107058	102465907		NR_107058	ENSG00000278340	MIR6862-2	hsa-mir-6862-2	microRNA 6862-2	ncRNA
238663	chrX	154023501	154023900	+	0	NA	3' UTR (NM_001316337, exon 5 of 5)	3' UTR (NM_001316337, exon 5 of 5)	-3711	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
224909	chr9	32551701	32553300	+	0	NA	promoter-TSS (NM_005802)	promoter-TSS (NM_005802)	86	NM_005802	10210		NM_005802	ENSG00000197579	TOPORS	LUN|P53BP3|RP31|TP53BPL	TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase	protein-coding
232781	chr9	136692621	136692880	+	0	NA	Intergenic	Intergenic	-5293	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
101664	chr17	68296121	68297350	+	0	NA	intron (NM_001352901, intron 1 of 11)	intron (NM_001352901, intron 1 of 11)	4600	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
142822	chr20	16801971	16802200	+	0	NA	Intergenic	Intergenic	53727	NM_020157	56914		NM_020157	ENSG00000125879	OTOR	FDP|MIAL1	otoraplin	protein-coding
9458	chr1	50425221	50425480	+	0	NA	Intergenic	CpG-1109	-1907	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
187572	chr5	142796671	142796930	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	25573	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
131501	chr2	96537701	96538200	+	0	NA	promoter-TSS (NM_001319092)	promoter-TSS (NM_001319092)	71	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
58253	chr12	128806601	128806800	+	0	NA	intron (NM_145648, intron 5 of 7)	intron (NM_145648, intron 5 of 7)	17258	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
112263	chr19	5794021	5795080	+	0	NA	Intergenic	AluJr|SINE|Alu	-3387	NM_001161619	56931		NM_020175	ENSG00000141994	DUS3L	DUS3	dihydrouridine synthase 3 like	protein-coding
130119	chr2	74552721	74553600	+	0	NA	promoter-TSS (NM_001381)	promoter-TSS (NM_001381)	782	NM_032603	84695		NM_032603	ENSG00000115318	LOXL3	LOXL|MYP28	lysyl oxidase like 3	protein-coding
200117	chr6	130210721	130211180	+	0	NA	intron (NM_001258275, intron 6 of 13)	AluSc8|SINE|Alu	4935	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
56397	chr12	113205771	113206730	+	0	NA	intron (NM_001330452, intron 2 of 4)	LTR10C|LTR|ERV1	14844	NM_001330452	115811		NM_138451	ENSG00000166578	IQCD	4933433C09Rik|CFAP84|DRC10	IQ motif containing D	protein-coding
9289	chr1	46423571	46423930	+	0	NA	Intergenic	Intergenic	-10077	NR_045483	729041		NR_045483		FAAHP1	FAAH-OUT|FAAHOUT|LINC00505	fatty acid amide hydrolase pseudogene 1	pseudo
105921	chr18	3458371	3459480	+	0	NA	3' UTR (NM_001278686, exon 4 of 4)	3' UTR (NM_001278686, exon 4 of 4)	5151	NM_173211	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
33510	chr10	119176321	119177000	+	0	NA	intron (NR_126102, intron 1 of 5)	intron (NR_126102, intron 1 of 5)	2152	NR_126106	10935		NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PPPCD|PRO1748|SCAR32|SP-22|prx-III	peroxiredoxin 3	protein-coding
224659	chr9	21001601	21002580	+	0	NA	3' UTR (NM_001321883, exon 7 of 7)	3' UTR (NM_001321883, exon 7 of 7)	29550	NM_001321883	401494		NM_001010915	ENSG00000188921	HACD4	PTPLAD2	3-hydroxyacyl-CoA dehydratase 4	protein-coding
32685	chr10	103962601	103962800	+	0	NA	Intergenic	L1M5|LINE|L1	-4440	NM_001304743	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
50616	chr12	48684421	48684680	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2312	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
163705	chr3	52276371	52276750	+	0	NA	intron (NM_025222, intron 1 of 8)	intron (NM_025222, intron 1 of 8)	2089	NM_025222	80335		NM_025222	ENSG00000164091	WDR82	MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A	WD repeat domain 82	protein-coding
114567	chr19	12899221	12899480	+	0	NA	exon (NM_001105578, exon 6 of 6)	exon (NM_001105578, exon 6 of 6)	8190	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
48215	chr12	8126971	8127340	+	0	NA	intron (NM_194450, intron 2 of 4)	MLT1H|LTR|ERVL-MaLR	3523	NM_194447	50856		NM_016184	ENSG00000111729	CLEC4A	CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR|hDCIR	C-type lectin domain family 4 member A	protein-coding
113057	chr19	8158421	8158780	+	0	NA	Intergenic	Intergenic	-9008	NM_032447	84467		NM_032447	ENSG00000142449	FBN3	-	fibrillin 3	protein-coding
96572	chr17	40482521	40483180	+	0	NA	intron (NM_032865, intron 6 of 12)	intron (NM_032865, intron 6 of 12)	18773	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
7398	chr1	32933071	32933800	+	0	NA	Intergenic	AluY|SINE|Alu	31374	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
42553	chr11	71786021	71788500	+	0	NA	Intergenic	CpG	26599	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
24135	chr1	235834671	235834900	+	0	NA	intron (NM_001301365, intron 1 of 52)	MER91A|DNA|hAT-Tip100	18275	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
59177	chr13	22018101	22018300	+	0	NA	Intergenic	Tigger4|DNA|TcMar-Tigger	-140040	NR_047040	100874182		NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
55086	chr12	96929751	96930050	+	0	NA	intron (NM_152905, intron 6 of 15)	HAL1M8|LINE|L1	22434	NM_001135175	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
208539	chr7	70679571	70680480	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-452119	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
198458	chr6	106144871	106145300	+	0	NA	Intergenic	MIRc|SINE|MIR	46144	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
191655	chr6	13400851	13400950	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	7237	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
138537	chr2	207525421	207525830	+	0	NA	Intergenic	Intergenic	-4337	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123337	chr19	53792951	53793350	+	0	NA	TTS (NM_001277129)	TTS (NM_001277129)	4445	NR_029866	442918		NR_029866	ENSG00000199143	MIR373	MIRN373|hsa-mir-373|miRNA373|mir-373	microRNA 373	ncRNA
87245	chr16	69757101	69757330	+	0	NA	Intergenic	Intergenic	-2247	NR_074074	28987		NM_014062	ENSG00000141101	NOB1	ART-4|MST158|MSTP158|NOB1P|PSMD8BP1	NIN1 (RPN12) binding protein 1 homolog	protein-coding
132115	chr2	101502071	101502230	+	0	NA	Intergenic	Intergenic	-27038	NM_001367509	731220		NM_207403	ENSG00000196460	RFX8	-	regulatory factor X8	protein-coding
52515	chr12	56068601	56068800	+	0	NA	Intergenic	LTR56|LTR|ERV1	-11408	NM_001005915	2065		NM_001982	ENSG00000065361	ERBB3	ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|VSCN1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3	erb-b2 receptor tyrosine kinase 3	protein-coding
214633	chr7	150739971	150740530	+	0	NA	intron (NM_001303630, intron 3 of 4)	intron (NM_001303630, intron 3 of 4)	2902	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
53680	chr12	68452701	68453900	+	0	NA	Intergenic	MIR|SINE|MIR	-1816	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
203628	chr7	960271	961230	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-5343	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
237306	chrX	115888101	115888330	+	0	NA	intron (NR_147172, intron 2 of 2)	CpG	47251	NR_147172	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
216897	chr8	22684521	22684780	+	0	NA	Intergenic	Intergenic	7714	NM_001199880	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
223080	chr8	143407301	143409300	+	0	NA	Intergenic	Intergenic	-9379	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
28664	chr10	60236951	60237580	+	0	NA	intron (NM_001204403, intron 8 of 43)	intron (NM_001204403, intron 8 of 43)	-96249	NM_001149	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
191905	chr6	15403751	15404640	+	0	NA	intron (NM_001267040, intron 2 of 17)	(CTGTGCC)n|Simple_repeat|Simple_repeat	155340	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
69716	chr14	98203451	98203950	+	0	NA	Intergenic	Intergenic	-225576	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
70819	chr14	103571951	103572530	+	0	NA	intron (NR_126432, intron 2 of 3)	intron (NR_126432, intron 2 of 3)	9280	NM_001302652	84334		NM_001302652	ENSG00000256053	COA8	APOP|APOP1|APOPT1|C14orf153|MC4DN17	cytochrome c oxidase assembly factor 8	protein-coding
157772	chr22	46740851	46741250	+	0	NA	Intergenic	Intergenic	-2798	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
30586	chr10	80145571	80145730	+	0	NA	TTS (NM_001331125)	TTS (NM_001331125)	12920	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
55273	chr12	102948901	102949100	+	0	NA	intron (NM_001354304, intron 1 of 13)	intron (NM_001354304, intron 1 of 13)	-8674	NM_004316	429		NM_004316	ENSG00000139352	ASCL1	ASH1|HASH1|MASH1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding
175171	chr4	55945701	55946100	+	0	NA	Intergenic	LTR7|LTR|ERV1	-3045	NM_025009	9662		NM_014645	ENSG00000174799	CEP135	CEP4|KIAA0635|MCPH8	centrosomal protein 135	protein-coding
139088	chr2	218878071	218878550	+	0	NA	Intergenic	Intergenic	-2542	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
184590	chr5	102887551	102888050	+	0	NA	intron (NR_033440, intron 2 of 23)	L2c|LINE|L2	21977	NR_033440	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
216436	chr8	19461371	19462580	+	0	NA	intron (NR_148900, intron 3 of 9)	intron (NR_148900, intron 3 of 9)	140570	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
94503	chr17	29369801	29370600	+	0	NA	Intergenic	Intergenic	-20163	NM_020791	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
35478	chr11	1499401	1499800	+	0	NA	Intergenic	Intergenic	-12821	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
26576	chr10	21891071	21891730	+	0	NA	intron (NM_022365, intron 7 of 11)	L1MDa|LINE|L1	112330	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
29558	chr10	71396151	71397350	+	0	NA	promoter-TSS (NM_022124)	promoter-TSS (NM_022124)	-170	NM_022124	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
10734	chr1	76154101	76154880	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	79744	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
20647	chr1	200038651	200038750	+	0	NA	intron (NM_003822, intron 1 of 6)	intron (NM_003822, intron 1 of 6)	-4125	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
185316	chr5	126782851	126783150	+	0	NA	intron (NR_134488, intron 1 of 11)	AluSg|SINE|Alu	5864	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
81923	chr16	11749501	11750100	+	0	NA	TTS (NM_014153)	TTS (NM_014153)	-6943	NR_136671	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
207015	chr7	38367101	38367700	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	25823	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
13341	chr1	113807501	113807900	+	0	NA	intron (NM_018364, intron 1 of 6)	AluSq2|SINE|Alu	4776	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
106268	chr18	12407521	12408800	+	0	NA	intron (NM_006553, intron 1 of 6)	CpG	231	NM_001142405	10650		NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
193184	chr6	29727571	29728700	+	0	NA	TTS (NM_001098479).5	TTS (NM_001098479).5	4701	NM_001098478	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
81892	chr16	11700601	11700800	+	0	NA	intron (NR_136673, intron 4 of 9)	intron (NR_136673, intron 4 of 9)	32245	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
126825	chr2	30693451	30693550	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	113946	NM_144575	92291		NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
223201	chr8	143581821	143582950	+	0	NA	intron (NM_001330646, intron 2 of 6)	intron (NM_001330646, intron 2 of 6)	-4055	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
195824	chr6	41305101	41305300	+	0	NA	Intergenic	Intergenic	-18455	NR_136332	54210		NM_018643	ENSG00000124731	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
213254	chr7	134454251	134454950	+	0	NA	intron (NM_001346142, intron 1 of 9)	intron (NM_001346142, intron 1 of 9)	4500	NM_001628	231		NM_001628	ENSG00000085662	AKR1B1	ADR|ALDR1|ALR2|AR	aldo-keto reductase family 1 member B	protein-coding
227420	chr9	89690621	89690880	+	0	NA	intron (NR_024280, intron 3 of 5)	intron (NR_024280, intron 3 of 5)	50967	NR_024280	100129066		NR_024280	ENSG00000237372	LINC03062	-	long intergenic non-protein coding RNA 3062	ncRNA
147595	chr20	62007171	62007530	+	0	NA	intron (NM_003185, intron 6 of 14)	intron (NM_003185, intron 6 of 14)	-53688	NR_031658	100302168		NR_031658	ENSG00000284193	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
37157	chr11	13680451	13680750	+	0	NA	intron (NM_032228, intron 1 of 11)	MSTB1|LTR|ERVL-MaLR	11932	NM_032228	84188		NM_032228	ENSG00000197601	FAR1	CSPSD|MLSTD2|PFCRD|SDR10E1	fatty acyl-CoA reductase 1	protein-coding
41864	chr11	67202701	67203150	+	0	NA	intron (NM_012308, intron 5 of 20)	AluJr|SINE|Alu	-37089	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
3163	chr1	12615501	12615700	+	0	NA	intron (NM_004753, intron 1 of 5)	intron (NM_004753, intron 1 of 5)	1189	NM_001319225	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
196173	chr6	42570851	42571250	+	0	NA	intron (NM_001363705, intron 1 of 46)	intron (NM_001363705, intron 1 of 46)	7021	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
88720	chr16	85985071	85985530	+	0	NA	Intergenic	MIRc|SINE|MIR	66953	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
214734	chr7	151045371	151045730	+	0	NA	3' UTR (NM_001282292, exon 16 of 16)	3' UTR (NM_001282292, exon 16 of 16)	-2742	NM_020322	9311		NM_004769	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid sensing ion channel subunit 3	protein-coding
84186	chr16	29826701	29828030	+	0	NA	intron (NM_005115, intron 1 of 14)	HAL1M8|LINE|L1	-3150	NM_001293205	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
96323	chr17	40015151	40016350	+	0	NA	exon (NM_001178147, exon 2 of 4)	exon (NM_001178147, exon 2 of 4)	310	NM_001178147	1440		NM_000759	ENSG00000108342	CSF3	C17orf33|CSF3OS|GCSF	colony stimulating factor 3	protein-coding
70949	chr14	104664671	104664830	+	0	NA	non-coding (NR_135293, exon 1 of 2)	non-coding (NR_135293, exon 1 of 2)	808	NR_135293	101929634		NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
140508	chr2	233207171	233207330	+	0	NA	3' UTR (NM_005541, exon 27 of 27).2	3' UTR (NM_005541, exon 27 of 27).2	-44321	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
125743	chr2	20669721	20670300	+	0	NA	intron (NM_182828, intron 1 of 1)	intron (NM_182828, intron 1 of 1)	2866	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
236894	chrX	84729801	84730050	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-204226	NR_024062	100131816		NM_178567	ENSG00000293307	UBE2DNL	-	ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene)	pseudo
213960	chr7	142784601	142785180	+	0	NA	intron (NM_001130026, intron 10 of 10)	AluSx1|SINE|Alu	13920	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
215191	chr7	155753321	155753800	+	0	NA	intron (NM_053043, intron 14 of 17)	intron (NM_053043, intron 14 of 17)	55603	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
87032	chr16	68274901	68275100	+	0	NA	exon (NM_003983, exon 3 of 11)	exon (NM_003983, exon 3 of 11)	10474	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
90021	chr16	89894971	89895400	+	0	NA	intron (NM_014972, intron 8 of 17)	intron (NM_014972, intron 8 of 17)	21593	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
137803	chr2	199940501	199940780	+	0	NA	intron (NR_109907, intron 2 of 6)	intron (NR_109907, intron 2 of 6)	-14677	NR_161377	79568		NM_024520	ENSG00000162972	MAIP1	C2orf47	matrix AAA peptidase interacting protein 1	protein-coding
96475	chr17	40249651	40249750	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSp|SINE|Alu	30396	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
219288	chr8	67968351	67968850	+	0	NA	intron (NM_024870, intron 1 of 39)	intron (NM_024870, intron 1 of 39)	16554	NM_024870	80243		NM_024870	ENSG00000046889	PREX2	DEP.2|DEPDC2|P-REX2|PPP1R129	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2	protein-coding
199158	chr6	111736151	111736550	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	22781	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
180406	chr5	10352251	10352350	+	0	NA	Intergenic	Intergenic	-1395	NM_005885	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
118534	chr19	36052151	36052450	+	0	NA	intron (NM_001331104, intron 1 of 3)	AluSc5|SINE|Alu	1985	NM_152658	199745		NM_152658	ENSG00000161277	THAP8	-	THAP domain containing 8	protein-coding
23067	chr1	226636501	226637330	+	0	NA	intron (NM_002221, intron 7 of 7)	intron (NM_002221, intron 7 of 7)	38153	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
67692	chr14	73239051	73239230	+	0	NA	promoter-TSS (NM_001365907)	promoter-TSS (NM_001365907)	-633	NM_001365907	89932		NM_173462	ENSG00000100767	PAPLN	PPN	papilin, proteoglycan like sulfated glycoprotein	protein-coding
150927	chr21	44245371	44245730	+	0	NA	TTS (NM_013369)	TTS (NM_013369)	-4584	NM_001363770	102723996		NM_001363770	ENSG00000277117	LOC102723996	-	ICOS ligand	protein-coding
185585	chr5	131393801	131394580	+	0	NA	3' UTR (NM_001375635, exon 5 of 5)	3' UTR (NM_001375635, exon 5 of 5)	130137	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
195046	chr6	35491021	35491380	+	0	NA	intron (NM_003214, intron 1 of 12)	intron (NM_003214, intron 1 of 12)	5879	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
145616	chr20	44653671	44654130	+	0	NA	Intergenic	L2|LINE|L2	-2142	NM_001322051	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
133054	chr2	112251371	112251830	+	0	NA	intron (NM_032494, intron 1 of 8)	MIR|SINE|MIR	3442	NM_032494	84524		NM_032494	ENSG00000144161	ZC3H8	Fliz1|ZC3HDC8	zinc finger CCCH-type containing 8	protein-coding
208300	chr7	66077851	66078330	+	0	NA	intron (NM_001024943, intron 1 of 15)	intron (NM_001024943, intron 1 of 15)	2271	NM_001024946	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
52412	chr12	55767571	55767730	+	0	NA	intron (NM_033082, intron 9 of 10)	AluY|SINE|Alu	24528	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
16663	chr1	155178601	155179000	+	0	NA	intron (NM_001256599, intron 7 of 9)	intron (NM_001256599, intron 7 of 9)	4046	NM_001256601	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
97085	chr17	42407401	42408100	+	0	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	15506	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
41204	chr11	65654621	65655400	+	0	NA	intron (NM_021975, intron 10 of 10)	intron (NM_021975, intron 10 of 10)	5818	NR_039709	100616284		NR_039709	ENSG00000265874	MIR4489	mir-4489	microRNA 4489	ncRNA
74049	chr15	52487571	52488280	+	0	NA	intron (NM_000259, intron 1 of 40)	intron (NM_000259, intron 1 of 40)	40955	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
109508	chr19	835171	835780	+	0	NA	Intergenic	CpG	-5524	NM_002777	5657		NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
223493	chr8	144064521	144064780	+	0	NA	Intergenic	Intergenic	-3958	NM_017570	26873		NM_017570	ENSG00000178814	OPLAH	5-Opase|OPLA|OPLAHD	5-oxoprolinase, ATP-hydrolysing	protein-coding
59717	chr13	29797271	29797430	+	0	NA	intron (NM_007106, intron 1 of 4)	intron (NM_007106, intron 1 of 4)	53267	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
192132	chr6	16758121	16758870	+	0	NA	intron (NM_000332, intron 1 of 8)	intron (NM_000332, intron 1 of 8)	1689	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
75076	chr15	64377751	64378100	+	0	NA	intron (NR_109934, intron 2 of 3)	AluYj4|SINE|Alu	3516	NM_001029989	9768		NM_014736	ENSG00000166803	PCLAF	KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF	PCNA clamp associated factor	protein-coding
79187	chr16	319721	320180	+	0	NA	intron (NM_181050, intron 2 of 9)	L1MEd|LINE|L1	32773	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
234737	chrX	21972571	21973330	+	0	NA	intron (NM_004595, intron 4 of 10)	intron (NM_004595, intron 4 of 10)	32241	NM_004595	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
85509	chr16	50769571	50769930	+	0	NA	intron (NM_015247, intron 7 of 19)	L1MD1|LINE|L1	27335	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
104739	chr17	81670751	81671050	+	0	NA	intron (NM_199287, intron 3 of 5)	AluSc|SINE|Alu	4163	NM_199287	339230		NM_199287	ENSG00000185298	CCDC137	RaRF	coiled-coil domain containing 137	protein-coding
81501	chr16	8953771	8954350	+	0	NA	intron (NM_003470, intron 1 of 30)	CpG	2320	NM_001321858	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
159366	chr3	13315151	13315690	+	0	NA	TTS (NM_024923)	TTS (NM_024923)	-32163	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
146015	chr20	46688801	46690000	+	0	NA	promoter-TSS (NM_033550)	promoter-TSS (NM_033550)	44	NM_033550	112858		NM_033550	ENSG00000172315	TP53RK	BUD32|C20orf64|GAMOS4|Nori-2|Nori-2p|PRPK|TPRKB|dJ101A2	TP53 regulating kinase	protein-coding
102367	chr17	75522121	75522380	+	0	NA	exon (NM_207346, exon 8 of 11)	exon (NM_207346, exon 8 of 11)	-3447	NM_001031803	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
232369	chr9	135887021	135888100	+	0	NA	intron (NM_015447, intron 1 of 16)	intron (NM_015447, intron 1 of 16)	19986	NM_015447	157922		NM_015447	ENSG00000130559	CAMSAP1	CDCBM12	calmodulin regulated spectrin associated protein 1	protein-coding
24634	chr1	246692571	246692730	+	0	NA	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-31759	NM_016002	51097		NM_016002	ENSG00000143653	SCCPDH	CGI-49|NET11	saccharopine dehydrogenase (putative)	protein-coding
5397	chr1	25487471	25488350	+	0	NA	intron (NM_001282564, intron 6 of 8)	MIR|SINE|MIR	-55696	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
14747	chr1	145999401	146000180	+	0	NA	Intergenic	Intergenic	-3211	NM_006472	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
233257	chr9	137276871	137278400	+	0	NA	promoter-TSS (NM_017723)	promoter-TSS (NM_017723)	-91	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
103259	chr17	77644751	77646630	+	0	NA	Intergenic	Intergenic	82869	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
125644	chr2	19863271	19863800	+	0	NA	Intergenic	Intergenic	-5319	NR_033875	400946		NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
94921	chr17	31926371	31926530	+	0	NA	Intergenic	L1MC3|LINE|L1	-10557	NM_001321207	23512		NM_015355	ENSG00000178691	SUZ12	CHET9|IMMAS|JJAZ1	SUZ12 polycomb repressive complex 2 subunit	protein-coding
66851	chr14	64975051	64975150	+	0	NA	intron (NM_001202559, intron 3 of 13)	AluSq2|SINE|Alu	-2764	NM_001330182	376267		NM_198686	ENSG00000139998	RAB15	-	RAB15, member RAS oncogene family	protein-coding
196645	chr6	44293571	44293730	+	0	NA	intron (NM_182539, intron 1 of 4)	MIRc|SINE|MIR	4048	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
28190	chr10	44677351	44677450	+	0	NA	Intergenic	Intergenic	-233916	NM_001345926	643236		NM_001123376	ENSG00000187783	TMEM72	C10orf127|KSP37	transmembrane protein 72	protein-coding
163442	chr3	50592651	50593380	+	0	NA	3' UTR (NM_001377425, exon 11 of 11)	3' UTR (NM_001377425, exon 11 of 11)	18759	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
75283	chr15	65082421	65082850	+	0	NA	Intergenic	L2a|LINE|L2	5889	NM_001101362	390594		NM_001101362	ENSG00000234438	KBTBD13	HCG1645727|NEM6	kelch repeat and BTB domain containing 13	protein-coding
151172	chr21	44967821	44968650	+	0	NA	intron (NM_001316986, intron 4 of 4)	intron (NM_001316986, intron 4 of 4)	25851	NR_033840	727699		NR_033840	ENSG00000234880	LINC00163	C21orf134|NCRNA00163|NLC1-A|NLC1A	long intergenic non-protein coding RNA 163	ncRNA
142926	chr20	18465501	18466030	+	0	NA	intron (NM_001367611, intron 1 of 20)	intron (NM_001367611, intron 1 of 20)	1265	NM_001351684	55184		NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84	double zinc ribbon and ankyrin repeat domains 1	protein-coding
65087	chr14	39582121	39582430	+	0	NA	Intergenic	Intergenic	-149775	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
206595	chr7	35730311	35731480	+	0	NA	Intergenic	AluSg|SINE|Alu	14458	NR_108082	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
220915	chr8	106833471	106833630	+	0	NA	Intergenic	Intergenic	-63306	NM_139166	137735		NM_139166	ENSG00000174429	ABRA	STARS	actin binding Rho activating protein	protein-coding
69176	chr14	92645971	92646130	+	0	NA	intron (NM_024832, intron 5 of 9)	L1MB8|LINE|L1	69816	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
134105	chr2	132352321	132352780	+	0	NA	promoter-TSS (NR_135203)	promoter-TSS (NR_135203)	-117	NR_135203	339742		NR_135203		FAM201B	-	family with sequence similarity 201 member B	ncRNA
66158	chr14	60397731	60398000	+	0	NA	Intergenic	CpG	74669	NR_146481	101927729		NR_146481	ENSG00000258556	LINC02322	-	long intergenic non-protein coding RNA 2322	ncRNA
176877	chr4	102639401	102639830	+	0	NA	intron (NM_005908, intron 14 of 16)	intron (NM_005908, intron 14 of 16)	121353	NM_005908	4126		NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
73670	chr15	44731871	44732300	+	0	NA	non-coding (NR_125376, exon 2 of 2)	non-coding (NR_125376, exon 2 of 2)	3097	NR_125376	100419583		NR_125376		LOC100419583	-	ring finger protein 4 pseudogene	pseudo
115941	chr19	16657901	16658430	+	0	NA	intron (NM_024104, intron 3 of 4)	intron (NM_024104, intron 3 of 4)	1979	NM_001300925	79086		NM_024104	ENSG00000214046	SMIM7	C19orf42	small integral membrane protein 7	protein-coding
28165	chr10	43623351	43624130	+	0	NA	Intergenic	L1MB7|LINE|L1	-5077	NR_038867	414201		NR_038867	ENSG00000223910	ZNF32-AS3	C10orf44|ZNF32-OT1|bA402L1.3	ZNF32 antisense RNA 3	ncRNA
194854	chr6	34486121	34486830	+	0	NA	intron (NM_020804, intron 1 of 9)	intron (NM_020804, intron 1 of 9)	20399	NM_020804	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
173819	chr4	18025151	18025730	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-3565	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
119318	chr19	39892721	39894380	+	0	NA	intron (NM_003890, intron 13 of 28)	intron (NM_003890, intron 13 of 28)	41076	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
159398	chr3	13450571	13450730	+	0	NA	Intergenic	AluJb|SINE|Alu	29403	NR_046690	100874101		NR_046690	ENSG00000244502	HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
59925	chr13	31135571	31136130	+	0	NA	3' UTR (NM_001286505, exon 16 of 16)	3' UTR (NM_001286505, exon 16 of 16)	26054	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
232063	chr9	133472821	133473250	+	0	NA	intron (NM_017585, intron 9 of 9)	intron (NM_017585, intron 9 of 9)	6064	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
101200	chr17	65499971	65500200	+	0	NA	Intergenic	Intergenic	42544	NR_131984	105827617		NR_131984	ENSG00000263520	LINC02563	CRAT40	long intergenic non-protein coding RNA 2563	ncRNA
60617	chr13	42259571	42259730	+	0	NA	Intergenic	Intergenic	-12502	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
151404	chr21	45990051	45990150	+	0	NA	intron (NM_001848, intron 11 of 34)	intron (NM_001848, intron 11 of 34)	8330	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
230365	chr9	128066521	128067500	+	0	NA	exon (NM_197956, exon 1 of 2)	exon (NM_197956, exon 1 of 2)	310	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
73521	chr15	43794671	43795430	+	0	NA	non-coding (NR_037672, exon 4 of 4)	non-coding (NR_037672, exon 4 of 4)	-1291	NR_031695	100302254		NR_031695	ENSG00000221792	MIR1282	MIRN1282|hsa-mir-1282	microRNA 1282	ncRNA
124228	chr19	57302701	57303100	+	0	NA	Intergenic	L1M2a|LINE|L1	-17572	NM_213598	125919		NM_213598	ENSG00000178229	ZNF543	-	zinc finger protein 543	protein-coding
66396	chr14	61498321	61498730	+	0	NA	intron (NM_006255, intron 10 of 13)	MLT1A|LTR|ERVL-MaLR	71669	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
218767	chr8	58968201	58968800	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	150647	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
222919	chr8	142912301	142912500	+	0	NA	intron (NM_000498, intron 8 of 8)	intron (NM_000498, intron 8 of 8)	5443	NM_000498	1585		NM_000498	ENSG00000179142	CYP11B2	ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo	cytochrome P450 family 11 subfamily B member 2	protein-coding
32184	chr10	101587351	101588750	+	0	NA	promoter-TSS (NM_001329744)	promoter-TSS (NM_001329744)	207	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
152888	chr22	22692721	22693080	+	0	NA	Intergenic	Intergenic	46588	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
78056	chr15	90096521	90098480	+	0	NA	intron (NM_002168, intron 1 of 10)	L1MB3|LINE|L1	3121	NM_001289910	3418		NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDH-2|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2	protein-coding
15298	chr1	149845201	149846480	+	0	NA	Intergenic	L2a|LINE|L2	-3089	NM_001040874	723790		NM_001040874	ENSG00000288859	H2AC19	H2A/R|H2AC18|HIST2H2AA4	H2A clustered histone 19	protein-coding
99742	chr17	50931001	50932030	+	0	NA	Intergenic	CpG	-63537	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
104865	chr17	81852321	81852930	+	0	NA	intron (NM_000918, intron 4 of 10)	intron (NM_000918, intron 4 of 10)	7910	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
213648	chr7	139753101	139753350	+	0	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	24773	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
93488	chr17	18956671	18956830	+	0	NA	intron (NM_152351, intron 1 of 14)	AluJb|SINE|Alu	4585	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
26951	chr10	26545421	26545500	+	0	NA	intron (NM_019043, intron 11 of 14)	AluSx|SINE|Alu	33847	NR_134472	101929117		NR_134472		LINC03028	-	long intergenic non-protein coding RNA 3028	ncRNA
183147	chr5	75048151	75048900	+	0	NA	intron (NM_001366737, intron 2 of 3)	intron (NM_001366737, intron 2 of 3)	4033	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
107163	chr18	35342201	35342930	+	0	NA	intron (NM_001308123, intron 1 of 3)	Tigger3|DNA|TcMar-Tigger	1855	NM_001375815	7572		NM_006965	ENSG00000172466	ZNF24	KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191	zinc finger protein 24	protein-coding
16009	chr1	152034371	152036100	+	0	NA	intron (NM_005620, intron 1 of 2)	intron (NM_005620, intron 1 of 2)	1769	NM_005620	6282		NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
153076	chr22	23314271	23314750	+	0	NA	intron (NM_021574, intron 20 of 21)	intron (NM_021574, intron 20 of 21)	-12106	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
110183	chr19	1670651	1671150	+	0	NA	Intergenic	AluJo|SINE|Alu	-18285	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
167984	chr3	136729771	136730130	+	0	NA	intron (NM_005862, intron 1 of 33)	AluSx|SINE|Alu	22428	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
80894	chr16	3720701	3721130	+	0	NA	Intergenic	Intergenic	-3391	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
134564	chr2	144201051	144201380	+	0	NA	intron (NM_001354351, intron 7 of 15)	L2a|LINE|L2	36124	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
27623	chr10	32940421	32941100	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	-5202	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
112700	chr19	7083071	7083480	+	0	NA	exon (NM_001044387, exon 8 of 8)	exon (NM_001044387, exon 8 of 8)	13572	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
11732	chr1	91891271	91891430	+	0	NA	intron (NM_001195684, intron 2 of 17)	AluJb|SINE|Alu	-5199	NM_003243	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
235338	chrX	44026501	44026850	+	0	NA	Intergenic	Intergenic	-53285	NM_000266	4693		NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	norrin cystine knot growth factor NDP	protein-coding
76707	chr15	75841451	75841930	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	-1757	NM_001284382	92912		NM_173469	ENSG00000140367	UBE2Q2	-	ubiquitin conjugating enzyme E2 Q2	protein-coding
92447	chr17	8470221	8471230	+	0	NA	Intergenic	Intergenic	34841	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
211580	chr7	105693421	105694150	+	0	NA	intron (NM_001385596, intron 3 of 11)	AmnSINE1|SINE|5S-Deu-L2	-14623	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
101081	chr17	64921101	64921300	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-1709	NM_001303255	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
104601	chr17	81408271	81408650	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-7682	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
155785	chr22	39287121	39287450	+	0	NA	Intergenic	Intergenic	26626	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
24353	chr1	240539871	240540030	+	0	NA	intron (NM_022469, intron 1 of 1)	intron (NM_022469, intron 1 of 1)	72205	NM_022469	64388		NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC|STHAG9	gremlin 2, DAN family BMP antagonist	protein-coding
29746	chr10	72172271	72172430	+	0	NA	intron (NM_001369102, intron 6 of 11)	AluSx3|SINE|Alu	43606	NM_001369106	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
40862	chr11	65086171	65086950	+	0	NA	exon (NM_006782, exon 4 of 8)	exon (NM_006782, exon 4 of 8)	2338	NM_006782	7542		NM_006782	ENSG00000162300	ZFPL1	D11S750|MCG4	zinc finger protein like 1	protein-coding
121557	chr19	47258771	47258930	+	0	NA	intron (NM_015603, intron 3 of 11)	L2b|LINE|L2	2325	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
197278	chr6	70707701	70708080	+	0	NA	intron (NM_001281440, intron 1 of 10)	L1MA9|LINE|L1	39360	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
7520	chr1	34163071	34163230	+	0	NA	intron (NM_052896, intron 1 of 69)	intron (NM_052896, intron 1 of 69)	2080	NM_001281956	114784		NM_052896	ENSG00000121904	CSMD2	dJ1007G16.1|dJ1007G16.2|dJ947L8.1	CUB and Sushi multiple domains 2	protein-coding
145134	chr20	38817601	38819100	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	12653	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
211669	chr7	106280701	106280980	+	0	NA	intron (NM_005746, intron 1 of 10)	AluSc8|SINE|Alu	4143	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
8443	chr1	40668151	40668330	+	0	NA	Intergenic	AluSc|SINE|Alu	-2558	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
218510	chr8	52938771	52938930	+	0	NA	promoter-TSS (NM_005285)	promoter-TSS (NM_005285)	-332	NM_005285	2831		NM_005285	ENSG00000288611	NPBWR1	GPR7	neuropeptides B and W receptor 1	protein-coding
104951	chr17	81956471	81956630	+	0	NA	intron (NM_178493, intron 8 of 10)	intron (NM_178493, intron 8 of 10)	4637	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
122012	chr19	48597051	48598130	+	0	NA	intron (NM_177973, intron 6 of 6)	AluSc8|SINE|Alu	-9152	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
108011	chr18	58754221	58755000	+	0	NA	TTS (NM_006785)	TTS (NM_006785)	-59270	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
99308	chr17	49816301	49816830	+	0	NA	intron (NM_001199155, intron 7 of 13)	intron (NM_001199155, intron 7 of 13)	27884	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
225629	chr9	36323171	36323930	+	0	NA	Intergenic	AluSq2|SINE|Alu	-46572	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
192964	chr6	27864271	27865660	+	0	NA	promoter-TSS (NM_003511)	promoter-TSS (NM_003511)	-352	NM_003511	8332		NM_003511	ENSG00000276903	H2AC16	H2A.i|H2A/i|H2AC11|H2AC13|H2AC15|H2AC17|H2AFI|HIST1H2AL|dJ193B12.9	H2A clustered histone 16	protein-coding
33630	chr10	119656721	119657330	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	5645	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
60952	chr13	46552601	46553500	+	0	NA	promoter-TSS (NM_001164213)	promoter-TSS (NM_001164213)	-120	NM_015116	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
30561	chr10	79713821	79714450	+	0	NA	intron (NR_120613, intron 6 of 6)	intron (NR_120613, intron 6 of 6)	10908	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
219794	chr8	81218401	81218680	+	0	NA	Intergenic	Intergenic	-61996	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
207334	chr7	44059071	44060280	+	0	NA	intron (NM_001362723, intron 11 of 12)	intron (NM_001362723, intron 11 of 12)	5892	NM_000290	5224		NM_000290	ENSG00000164708	PGAM2	GSD10|PGAM-M|PGAMM	phosphoglycerate mutase 2	protein-coding
117500	chr19	19871321	19871900	+	0	NA	intron (NM_001331134, intron 1 of 1)	LTR70|LTR|ERV1	5728	NM_021047	56242		NM_021047	ENSG00000256771	ZNF253	BMZF-1|BMZF1|ZNF411	zinc finger protein 253	protein-coding
207001	chr7	38348801	38349460	+	0	NA	intron (NR_040085, intron 2 of 3)	intron (NR_040085, intron 2 of 3)	7553	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
50536	chr12	47902701	47904300	+	0	NA	intron (NM_001017535, intron 1 of 10)	intron (NM_001017535, intron 1 of 10)	1494	NM_001374661	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
100959	chr17	64504151	64504250	+	0	NA	intron (NM_004396, intron 3 of 12)	intron (NM_004396, intron 3 of 12)	1737	NM_001320597	1655		NM_004396	ENSG00000108654	DDX5	G17P1|HLR1|HUMP68|p68	DEAD-box helicase 5	protein-coding
230957	chr9	129436801	129438330	+	0	NA	Intergenic	CpG	-51095	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
57341	chr12	121748871	121749430	+	0	NA	intron (NM_001080825, intron 3 of 11)	intron (NM_001080825, intron 3 of 11)	36398	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
78821	chr15	99703171	99703900	+	0	NA	intron (NM_001130927, intron 7 of 9)	intron (NM_001130927, intron 7 of 9)	29902	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
118086	chr19	34364701	34365730	+	0	NA	promoter-TSS (NM_001329911)	promoter-TSS (NM_001329911)	19	NM_000175	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
223215	chr8	143592371	143592550	+	0	NA	intron (NM_032378, intron 1 of 9)	intron (NM_032378, intron 1 of 9)	4953	NM_001130057	1936		NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
43057	chr11	74390771	74391130	+	0	NA	intron (NM_173582, intron 1 of 13)	L1MB2|LINE|L1	7483	NM_173582	283209		NM_173582	ENSG00000165434	PGM2L1	BM32A|NEDHFS|PMMLP	phosphoglucomutase 2 like 1	protein-coding
26248	chr10	14617951	14618050	+	0	NA	intron (NM_001282695, intron 2 of 5)	L1ME1|LINE|L1	-13599	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
81429	chr16	8853251	8853950	+	0	NA	3' UTR (NM_014316, exon 4 of 4)	3' UTR (NM_014316, exon 4 of 4)	4131	NR_147908	100130283		NR_147908	ENSG00000140650	LOC100130283	-	uncharacterized LOC100130283	ncRNA
85421	chr16	50328471	50328830	+	0	NA	intron (NM_013263, intron 9 of 16)	intron (NM_013263, intron 9 of 16)	36034	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
55061	chr12	96474351	96474750	+	0	NA	Intergenic	Intergenic	-15027	NM_001306084	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
201830	chr6	150048121	150048380	+	0	NA	Intergenic	L1M5|LINE|L1	20871	NM_024518	79465		NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
51069	chr12	49869101	49869800	+	0	NA	3' UTR (NM_012306, exon 12 of 12)	3' UTR (NM_012306, exon 12 of 12)	-26344	NM_181708	144233		NM_181708	ENSG00000186666	BCDIN3D	-	BCDIN3 domain containing RNA methyltransferase	protein-coding
11474	chr1	90579171	90579500	+	0	NA	Intergenic	Intergenic	-78415	NR_145742	109616984		NR_145742	ENSG00000199666	SNORD3G	-	small nucleolar RNA, C/D box 3G	snoRNA
111016	chr19	3054951	3055850	+	0	NA	intron (NM_198969, intron 5 of 6)	intron (NM_198969, intron 5 of 6)	7095	NM_001130	166		NM_001130	ENSG00000104964	TLE5	AES|AES-1|AES-2|ESP1|GRG|GRG5|Grg-5	TLE family member 5, transcriptional modulator	protein-coding
151096	chr21	44847321	44847580	+	0	NA	Intergenic	Intergenic	26240	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
230607	chr9	128618221	128618680	+	0	NA	intron (NM_001375310, intron 43 of 57)	intron (NM_001375310, intron 43 of 57)	38400	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
179145	chr4	169611801	169613680	+	0	NA	promoter-TSS (NM_001374423)	promoter-TSS (NM_001374423)	-157	NM_001199398	4750		NM_012224	ENSG00000137601	NEK1	ALS24|NY-REN-55|OFD2|SRPS2|SRPS2A|SRTD6	NIMA related kinase 1	protein-coding
6276	chr1	27597121	27597730	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	6069	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
78128	chr15	90374801	90375000	+	0	NA	Intergenic	Intergenic	-13342	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
100609	chr17	63497951	63498050	+	0	NA	non-coding (NR_168483, exon 14 of 14)	non-coding (NR_168483, exon 14 of 14)	13154	NM_001178057	1636		NM_000789	ENSG00000159640	ACE	ACE1|CD143|DCP|DCP1	angiotensin I converting enzyme	protein-coding
186733	chr5	139291101	139291430	+	0	NA	intron (NM_001282278, intron 4 of 16)	L2b|LINE|L2	-2475	NM_018834	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
35036	chr11	572821	573450	+	0	NA	TTS (NR_026967)	TTS (NR_026967)	2750	NR_026967	143666		NR_026967		LOC143666	-	uncharacterized LOC143666	ncRNA
193352	chr6	30258221	30258550	+	0	NA	intron (NR_052012, intron 1 of 4)	intron (NR_052012, intron 1 of 4)	-1177	NR_027822	3139		NR_027822	ENSG00000291097	HLA-L	HLA-92|HLA92|HLAL	major histocompatibility complex, class I, L (pseudogene)	pseudo
189530	chr5	173885631	173886430	+	0	NA	Intergenic	Intergenic	-2319	NM_001308189	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
89104	chr16	88489701	88489900	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	20882	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
200052	chr6	129860371	129861430	+	0	NA	intron (NM_001010876, intron 1 of 4)	intron (NM_001010876, intron 1 of 4)	415	NM_001010876	253582		NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
64052	chr14	22539821	22540400	+	0	NA	Intergenic	Intergenic	16952	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
210260	chr7	99400401	99400930	+	0	NA	intron (NM_014891, intron 3 of 5)	MIR|SINE|MIR	7932	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
147407	chr20	58851801	58852080	+	0	NA	intron (NM_001309861, intron 1 of 12)	CpG	-1037	NR_002785	149775		NR_002785	ENSG00000235590	GNAS-AS1	GNAS-AS|GNAS1AS|GNASAS|NCRNA00075|NESP-AS|NESPAS|SANG	GNAS antisense RNA 1	ncRNA
84161	chr16	29788801	29789000	+	0	NA	Intergenic	AluSx|SINE|Alu	-1851	NM_001256269	3835		NM_007317	ENSG00000079616	KIF22	A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2	kinesin family member 22	protein-coding
96093	chr17	39616471	39616800	+	0	NA	Intergenic	Intergenic	-8715	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
195079	chr6	35567701	35567900	+	0	NA	Intergenic	Intergenic	-54904	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
176658	chr4	99998051	99998150	+	0	NA	intron (NR_125923, intron 1 of 3)	intron (NR_125923, intron 1 of 3)	47606	NR_125923	256880		NR_002799		H2AZ1-DT	-	H2AZ1 divergent transcript	ncRNA
207280	chr7	43987151	43987450	+	0	NA	intron (NR_003655, intron 6 of 15)	AluSx1|SINE|Alu	-10568	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
149959	chr21	36383121	36383380	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2142	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
198981	chr6	110897821	110898950	+	0	NA	Intergenic	Intergenic	23601	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
219693	chr8	80864551	80865650	+	0	NA	intron (NM_001033723, intron 1 of 8)	intron (NM_001033723, intron 1 of 8)	9368	NM_001367783	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
38940	chr11	47510171	47510580	+	0	NA	intron (NM_001376409, intron 1 of 15)	intron (NM_001376409, intron 1 of 15)	13456	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
90391	chr17	1289951	1290250	+	0	NA	intron (NM_172367, intron 1 of 2)	L2|LINE|L2	10438	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
132101	chr2	101342021	101342830	+	0	NA	Intergenic	Intergenic	32975	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
58113	chr12	124865321	124866000	+	0	NA	Intergenic	Intergenic	-1796	NM_001082959	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
3485	chr1	16014071	16014480	+	0	NA	3' UTR (NM_001349685, exon 3 of 3)	3' UTR (NM_001349685, exon 3 of 3)	3768	NM_001349685	27129		NM_014424	ENSG00000173641	HSPB7	cvHSP	heat shock protein family B (small) member 7	protein-coding
42314	chr11	68470171	68470650	+	0	NA	intron (NM_001352362, intron 2 of 24)	L2a|LINE|L2	9658	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
30292	chr10	75224851	75225150	+	0	NA	intron (NM_003375, intron 9 of 10)	intron (NM_003375, intron 9 of 10)	10957	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
78783	chr15	99424701	99425900	+	0	NA	Intergenic	Intergenic	-140117	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
5168	chr1	24929901	24931180	+	0	NA	promoter-TSS (NM_004350)	promoter-TSS (NM_004350)	-264	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
84868	chr16	31173421	31173680	+	0	NA	Intergenic	AluJo|SINE|Alu	-6560	NM_001170634	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
153343	chr22	24411171	24411330	+	0	NA	intron (NM_001254732, intron 13 of 14)	intron (NM_001254732, intron 13 of 14)	-12347	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
83618	chr16	28207871	28208030	+	0	NA	intron (NM_015171, intron 1 of 23)	AluSx|SINE|Alu	4015	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
186634	chr5	138551151	138551550	+	0	NA	Intergenic	AluSx3|SINE|Alu	7691	NR_145752	109617013		NR_145752	ENSG00000222937	SNORD63B	-	small nucleolar RNA, C/D box 63B	snoRNA
17680	chr1	157735921	157736180	+	0	NA	Intergenic	AluSx3|SINE|Alu	-35281	NM_052939	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
176908	chr4	102804771	102804930	+	0	NA	intron (NM_003340, intron 4 of 7)	AluSz6|SINE|Alu	21010	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
64544	chr14	24481551	24481950	+	0	NA	intron (NR_110032, intron 2 of 2)	intron (NR_110032, intron 2 of 2)	26515	NM_001308083	1215		NM_001836	ENSG00000092009	CMA1	CYH|MCT1|chymase	chymase 1	protein-coding
71980	chr15	25778871	25779230	+	0	NA	intron (NM_024490, intron 2 of 20)	AluSz|SINE|Alu	69775	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
149609	chr21	33360951	33361800	+	0	NA	Intergenic	Intergenic	36405	NM_001384503	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
12676	chr1	109423471	109423830	+	0	NA	intron (NM_001199774, intron 1 of 8)	intron (NM_001199774, intron 1 of 8)	2798	NM_001199772	5686		NM_002790	ENSG00000143106	PSMA5	PSC5|ZETA	proteasome 20S subunit alpha 5	protein-coding
48155	chr12	7929371	7930330	+	0	NA	exon (NM_006931, exon 6 of 10)	exon (NM_006931, exon 6 of 10)	6337	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
153227	chr22	23964821	23965080	+	0	NA	intron (NM_001355, intron 1 of 2)	L2c|LINE|L2	-1938	NM_001381852	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
191911	chr6	15432951	15433680	+	0	NA	intron (NM_001267040, intron 3 of 17)	intron (NM_001267040, intron 3 of 17)	184460	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
31743	chr10	97768971	97769330	+	0	NA	intron (NM_003015, intron 2 of 2)	intron (NM_003015, intron 2 of 2)	2849	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
128862	chr2	64016571	64016930	+	0	NA	intron (NM_016516, intron 1 of 22)	AluSx1|SINE|Alu	2678	NM_016516	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
102861	chr17	76498251	76499280	+	0	NA	intron (NR_164786, intron 1 of 19)	intron (NR_164786, intron 1 of 19)	2658	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
9593	chr1	52139671	52140430	+	0	NA	Intergenic	Intergenic	-2039	NM_007324	9372		NM_004799	ENSG00000157077	ZFYVE9	MADHIP|NSP|PPP1R173|SARA|SMADIP	zinc finger FYVE-type containing 9	protein-coding
890	chr1	1656501	1656700	+	0	NA	intron (NM_033490, intron 2 of 18)	AluY|SINE|Alu	2404	NM_033487	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
3151	chr1	12567501	12567900	+	0	NA	TTS (NM_001319225)	TTS (NM_001319225)	11323	NR_106788	102466722		NR_106788	ENSG00000276830	MIR6730	hsa-mir-6730	microRNA 6730	ncRNA
131515	chr2	96550751	96551650	+	0	NA	exon (NM_001319085, exon 7 of 7)	exon (NM_001319085, exon 7 of 7)	13321	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
195373	chr6	36685671	36686500	+	0	NA	3' UTR (NM_000389, exon 3 of 3)	3' UTR (NM_000389, exon 3 of 3)	7371	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
113112	chr19	8298351	8298730	+	0	NA	Intergenic	Intergenic	9818	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
153192	chr22	23847271	23847630	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-8444	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
180094	chr5	1151971	1152600	+	0	NA	Intergenic	Intergenic	26320	NR_109911	101928857		NR_109911	ENSG00000249201	TERLR1	CTD-3080P12.3	TERT regulating lncRNA 1	ncRNA
45175	chr11	117231611	117233600	+	0	NA	promoter-TSS (NM_004716)	promoter-TSS (NM_004716)	-66	NM_207343	257160		NM_207343	ENSG00000167257	RNF214	-	ring finger protein 214	protein-coding
18798	chr1	167621351	167621450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8793	NM_001322923	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
178702	chr4	152591321	152591680	+	0	NA	Intergenic	Intergenic	55072	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
235790	chrX	49166271	49168000	+	0	NA	3' UTR (NM_001099681, exon 5 of 5)	3' UTR (NM_001099681, exon 5 of 5)	4292	NM_024859	79917		NM_024859	ENSG00000269313	MAGIX	JM10|PDZX	MAGI family member, X-linked	protein-coding
187888	chr5	148810271	148810430	+	0	NA	Intergenic	L1MC1|LINE|L1	-16261	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
229448	chr9	121545901	121546200	+	0	NA	Intergenic	Intergenic	-21052	NM_032552	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
10575	chr1	67332721	67333580	+	0	NA	intron (NM_001374259, intron 8 of 16)	intron (NM_001374259, intron 8 of 16)	25277	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
176371	chr4	88590201	88590880	+	0	NA	intron (NM_001375482, intron 1 of 24)	AluY|SINE|Alu	-1940	NM_001375478	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
235461	chrX	46574001	46574600	+	0	NA	exon (NM_019886, exon 1 of 2)	exon (NM_019886, exon 1 of 2)	535	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
169021	chr3	152452201	152452700	+	0	NA	intron (NM_001376833, intron 7 of 8)	MamGypLTR1b|LTR|Gypsy	-111460	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
6745	chr1	30720821	30721080	+	0	NA	intron (NR_034182, intron 1 of 3)	MIR|SINE|MIR	2178	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
90856	chr17	2366271	2366430	+	0	NA	intron (NM_001346700, intron 11 of 22)	intron (NM_001346700, intron 11 of 22)	28849	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
100731	chr17	63899151	63899650	+	0	NA	Intergenic	Intergenic	-2826	NM_001317	1442		NM_001317	ENSG00000136488	CSH1	CS-1|CSA|CSMT|GHB3|PL|hCS-1|hCS-A	chorionic somatomammotropin hormone 1	protein-coding
145962	chr20	46306751	46307900	+	0	NA	intron (NM_021248, intron 1 of 11)	CpG	1173	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
79389	chr16	658871	659230	+	0	NA	intron (NM_145294, intron 24 of 40)	intron (NM_145294, intron 24 of 40)	-9033	NM_001352287	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
186116	chr5	134139751	134139850	+	0	NA	intron (NM_201632, intron 4 of 8)	intron (NM_201632, intron 4 of 8)	16182	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
163711	chr3	52283501	52284680	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3730	NM_001144951	132158		NM_145262	ENSG00000168237	GLYCTK	HBEBP2|HBEBP4|HBeAgBP4A	glycerate kinase	protein-coding
237233	chrX	109759821	109760650	+	0	NA	Intergenic	Intergenic	-26843	NM_022977	2182		NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68|XLID63	acyl-CoA synthetase long chain family member 4	protein-coding
221473	chr8	124479501	124479950	+	0	NA	intron (NM_007218, intron 1 of 1)	L1M5|LINE|L1	4845	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
46961	chr11	134655351	134655850	+	0	NA	Intergenic	Intergenic	-80345	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
138585	chr2	207772101	207772930	+	0	NA	Intergenic	MER41B|LTR|ERV1	-2609	NM_003468	7855		NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5|MCOPCB11	frizzled class receptor 5	protein-coding
123385	chr19	53914921	53915530	+	0	NA	intron (NM_031896, intron 3 of 5)	intron (NM_031896, intron 3 of 5)	5947	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
153049	chr22	23276571	23277330	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	14183	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
52635	chr12	56276651	56276750	+	0	NA	intron (NM_004077, intron 6 of 10)	AluSp|SINE|Alu	9374	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
159730	chr3	15800551	15801830	+	0	NA	intron (NM_015199, intron 1 of 27)	intron (NM_015199, intron 1 of 27)	-3006	NR_146111	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
107310	chr18	44893451	44893950	+	0	NA	intron (NM_001379141, intron 3 of 5)	MER112|DNA|hAT-Charlie	76466	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
102955	chr17	76697821	76698150	+	0	NA	intron (NM_001008528, intron 1 of 3)	GA-rich|Low_complexity|Low_complexity	-9098	NR_130928	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
47938	chr12	6826951	6827960	+	0	NA	promoter-TSS (NM_014262)	promoter-TSS (NM_014262)	-952	NM_014262	10536		NM_014262	ENSG00000110811	P3H3	GRCB|HSU47926|LEPREL2	prolyl 3-hydroxylase 3	protein-coding
108884	chr18	79400701	79402680	+	0	NA	intron (NM_001278673, intron 1 of 8)	intron (NM_001278673, intron 1 of 8)	1391	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
156533	chr22	41422501	41423200	+	0	NA	Intergenic	L1MD2|LINE|L1	23951	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
86784	chr16	67801551	67802550	+	0	NA	intron (NM_001320238, intron 1 of 12)	AluJb|SINE|Alu	4510	NM_020850	57610		NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
62420	chr13	99300951	99301780	+	0	NA	intron (NM_004951, intron 1 of 1)	intron (NM_004951, intron 1 of 1)	6034	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
227856	chr9	93575501	93577450	+	0	NA	promoter-TSS (NM_005392)	promoter-TSS (NM_005392)	-109	NM_005392	5253		NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding
133440	chr2	119368971	119369130	+	0	NA	intron (NM_001178017, intron 2 of 3)	intron (NM_001178017, intron 2 of 3)	1336	NM_001079863	1622		NM_020548	ENSG00000155368	DBI	ACBD1|ACBP|CCK-RP|EP	diazepam binding inhibitor, acyl-CoA binding protein	protein-coding
231883	chr9	133021471	133021630	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	1120	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
51603	chr12	52837471	52837630	+	0	NA	TTS (NM_001300814)	TTS (NM_001300814)	-3239	NM_175834	338785		NM_175834	ENSG00000185640	KRT79	K6L|KRT6L	keratin 79	protein-coding
7870	chr1	36388971	36389130	+	0	NA	Intergenic	AluJr|SINE|Alu	-3126	NM_001282546	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
171254	chr3	195852751	195853050	+	0	NA	intron (NR_134939, intron 1 of 1)	L1MEf|LINE|L1	1328	NR_134940	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
20852	chr1	201888371	201889650	+	0	NA	exon (NM_198149, exon 1 of 5)	exon (NM_198149, exon 1 of 5)	112	NM_198149	149345		NM_198149	ENSG00000198892	SHISA4	C1orf40|TMEM58	shisa family member 4	protein-coding
2429	chr1	9603171	9603330	+	0	NA	3' UTR (NM_001010866, exon 6 of 6)	3' UTR (NM_001010866, exon 6 of 6)	14339	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
77427	chr15	84164201	84164600	+	0	NA	Intergenic	Intergenic	6584	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
44363	chr11	102455371	102455700	+	0	NA	intron (NR_135053, intron 1 of 1)	intron (NR_135053, intron 1 of 1)	2616	NR_135053	101928424		NR_135053	ENSG00000255337	TMEM123-DT	-	TMEM123 divergent transcript	ncRNA
66026	chr14	58274451	58275350	+	0	NA	intron (NR_029435, intron 2 of 3)	AluJo|SINE|Alu	-13133	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
149731	chr21	34347951	34348330	+	0	NA	Intergenic	Intergenic	-15866	NM_172201	9992		NM_005136	ENSG00000159197	KCNE2	ATFB4|LQT5|LQT6|MIRP1	potassium voltage-gated channel subfamily E regulatory subunit 2	protein-coding
102605	chr17	75917471	75917830	+	0	NA	intron (NM_001319193, intron 22 of 28)	intron (NM_001319193, intron 22 of 28)	-12766	NM_032478	64978		NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3|mL38	mitochondrial ribosomal protein L38	protein-coding
181238	chr5	39195601	39196150	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	23688	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
238813	chrX	154407001	154407250	+	0	NA	intron (NM_001009934, intron 1 of 7)	FRAM|SINE|Alu	2129	NM_001303620	1774		NM_006730	ENSG00000013563	DNASE1L1	DNAS1L1|DNASEX|DNL1L|G4.8|XIB	deoxyribonuclease 1 like 1	protein-coding
73409	chr15	42919501	42920100	+	0	NA	intron (NM_173500, intron 1 of 14)	intron (NM_173500, intron 1 of 14)	978	NM_173500	146057		NM_173500	ENSG00000128881	TTBK2	SCA11|TTBK	tau tubulin kinase 2	protein-coding
101814	chr17	73474371	73474630	+	0	NA	intron (NM_001144952, intron 2 of 44)	intron (NM_001144952, intron 2 of 44)	-39183	NR_135635	101928251		NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA
151068	chr21	44764971	44766050	+	0	NA	Intergenic	Intergenic	36310	NM_182688	7327		NM_003343	ENSG00000184787	UBE2G2	UBC7	ubiquitin conjugating enzyme E2 G2	protein-coding
47289	chr12	1656001	1656430	+	0	NA	Intergenic	Intergenic	4165	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
37217	chr11	14413271	14413830	+	0	NA	Intergenic	Intergenic	-49044	NM_001177314	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
234312	chrX	13726321	13726580	+	0	NA	intron (NM_014563, intron 1 of 4)	L1PA6|LINE|L1	8170	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
40372	chr11	63990751	63991450	+	0	NA	intron (NR_003089, intron 3 of 5)	MIRb|SINE|MIR	5247	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
195097	chr6	35598201	35598400	+	0	NA	intron (NM_001145775, intron 6 of 11)	AluSx|SINE|Alu	66489	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
6323	chr1	27659141	27661030	+	0	NA	TTS (NR_151722)	TTS (NR_151722)	2637	NR_151722	111216282		NR_151722	ENSG00000233975	LINC02574	HEAL	long intergenic non-protein coding RNA 2574	ncRNA
109621	chr19	971671	972300	+	0	NA	exon (NM_005224, exon 9 of 9)	exon (NM_005224, exon 9 of 9)	-10943	NM_001372085	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
177080	chr4	108056621	108057080	+	0	NA	intron (NM_001130714, intron 9 of 9)	intron (NM_001130714, intron 9 of 9)	52186	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
60818	chr13	45362051	45362350	+	0	NA	intron (NR_024458, intron 3 of 10)	L2a|LINE|L2	20855	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
90699	chr17	1762621	1763430	+	0	NA	intron (NM_001329903, intron 1 of 7)	intron (NM_001329903, intron 1 of 7)	221	NM_001329903	5176		NM_002615	ENSG00000132386	SERPINF1	EPC-1|OI12|OI6|PEDF|PIG35	serpin family F member 1	protein-coding
92051	chr17	7501751	7501850	+	0	NA	intron (NM_000937, intron 14 of 29)	intron (NM_000937, intron 14 of 29)	17434	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
40901	chr11	65137301	65137700	+	0	NA	Intergenic	L2|LINE|L2	-2981	NM_032431	84447		NM_032431	ENSG00000162298	SYVN1	DER3|HRD1	synoviolin 1	protein-coding
197136	chr6	57970751	57970850	+	0	NA	Intergenic	MamRep488|DNA|hAT-Tip100	-9354	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
5538	chr1	25816901	25817350	+	0	NA	3' UTR (NM_020451, exon 13 of 13)	3' UTR (NM_020451, exon 13 of 13)	-2781	NM_001099627	56181		NM_019557	ENSG00000117640	MTFR1L	FAM54B|HYST1888|MST116|MSTP116	mitochondrial fission regulator 1 like	protein-coding
170252	chr3	184241471	184241630	+	0	NA	TTS (NM_005787)	TTS (NM_005787)	145	NR_030410	100187716		NR_030410	ENSG00000221120	MIR1224	MIRN1224|mir-1224	microRNA 1224	ncRNA
178506	chr4	150825201	150825400	+	0	NA	intron (NM_001367550, intron 30 of 56)	Tigger2|DNA|TcMar-Tigger	189967	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
33915	chr10	124598251	124598550	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-105628	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
116343	chr19	17858101	17858380	+	0	NA	Intergenic	L1M4b|LINE|L1	-1670	NM_000980	6142		NM_000980	ENSG00000105640	RPL18A	L18A|eL20	ribosomal protein L18a	protein-coding
217473	chr8	28869821	28870280	+	0	NA	intron (NM_001363038, intron 1 of 16)	intron (NM_001363038, intron 1 of 16)	19865	NM_001172562	55756		NM_018250	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
163832	chr3	52458821	52459500	+	0	NA	intron (NM_001276294, intron 3 of 13)	intron (NM_001276294, intron 3 of 13)	3556	NM_001276294	11188		NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
182451	chr5	62316351	62316450	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	10194	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
75244	chr15	64894601	64895280	+	0	NA	Intergenic	Intergenic	-16962	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
233200	chr9	137215801	137216000	+	0	NA	exon (NM_001144027, exon 11 of 13)	exon (NM_001144027, exon 11 of 13)	5423	NM_031297	727800		NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
94174	chr17	28475321	28475580	+	0	NA	intron (NM_003984, intron 1 of 11)	L2a|LINE|L2	1806	NM_001346684	9058		NM_003984	ENSG00000007216	SLC13A2	NADC1|NaCT|NaDC-1|SDCT1	solute carrier family 13 member 2	protein-coding
147922	chr20	62910471	62910630	+	0	NA	intron (NM_001193369, intron 3 of 15)	intron (NM_001193369, intron 3 of 15)	15955	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
110458	chr19	2007121	2007500	+	0	NA	intron (NM_017797, intron 1 of 8)	MER58A|DNA|hAT-Charlie	8404	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
18433	chr1	161471871	161472100	+	0	NA	Intergenic	CpG	-33472	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
60111	chr13	37074771	37075000	+	0	NA	Intergenic	Intergenic	-15172	NM_001278481	55578		NM_017569	ENSG00000102710	SUPT20H	C13|C13orf19|FAM48A|FP757|P38IP|SPT20	SPT20 homolog, SAGA complex component	protein-coding
116227	chr19	17522271	17522430	+	0	NA	promoter-TSS (NM_001098524)	promoter-TSS (NM_001098524)	-951	NM_001098524	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
183168	chr5	75333321	75333780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3618	NM_001364187	3156		NM_000859	ENSG00000113161	HMGCR	LDLCQ3|LGMDR28|MYPLG	3-hydroxy-3-methylglutaryl-CoA reductase	protein-coding
100812	chr17	64063801	64064530	+	0	NA	intron (NM_001433, intron 9 of 21)	intron (NM_001433, intron 9 of 21)	-43531	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
237421	chrX	119635751	119636050	+	0	NA	intron (NM_145799, intron 7 of 10)	L2b|LINE|L2	10948	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
140621	chr2	233442121	233442450	+	0	NA	intron (NM_001377259, intron 8 of 27)	intron (NM_001377259, intron 8 of 27)	23073	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
173420	chr4	8197671	8197930	+	0	NA	Intergenic	Intergenic	-1490	NR_134639	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
69632	chr14	97708801	97710230	+	0	NA	Intergenic	Intergenic	-22857	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
160303	chr3	27467501	27467980	+	0	NA	intron (NR_135544, intron 1 of 24)	intron (NR_135544, intron 1 of 24)	-10962	NM_001258380	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
211856	chr7	110994571	110994900	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-96271	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
129208	chr2	68218801	68219280	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	33492	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
213667	chr7	139886271	139886430	+	0	NA	intron (NM_001314028, intron 3 of 12)	intron (NM_001314028, intron 3 of 12)	57086	NM_001366538	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
45416	chr11	118358851	118360160	+	0	NA	promoter-TSS (NM_001204077)	promoter-TSS (NM_001204077)	-95	NM_001204077	9354		NM_004788	ENSG00000110344	UBE4A	E4|NEDHMS|UBOX2|UFD2	ubiquitination factor E4A	protein-coding
177201	chr4	108346121	108346400	+	0	NA	Intergenic	Intergenic	174140	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
138359	chr2	203939801	203941750	+	0	NA	intron (NM_012092, intron 1 of 4)	L1MEj|LINE|L1	4012	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123559	chr19	54417751	54418750	+	0	NA	intron (NM_020659, intron 1 of 13).4	intron (NM_020659, intron 1 of 13).4	2786	NM_020659	57348		NM_020659	ENSG00000167614	TTYH1	-	tweety family member 1	protein-coding
208357	chr7	66580201	66580400	+	0	NA	intron (NR_111976, intron 1 of 3)	intron (NR_111976, intron 1 of 3)	12107	NR_111978	493754		NR_002933	ENSG00000291136	RABGEF1P1	GS1-124K5.11	RABGEF1 pseudogene 1	pseudo
44001	chr11	94543551	94545150	+	0	NA	TTS (NR_135093)	TTS (NR_135093)	499	NM_002033	2526		NM_002033	ENSG00000196371	FUT4	CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1	fucosyltransferase 4	protein-coding
162005	chr3	46404701	46404900	+	0	NA	intron (NR_125406, intron 1 of 3)	L2a|LINE|L2	2259	NR_125406	102724297		NR_125406	ENSG00000223552	CCR5AS	-	CCR5 antisense RNA	ncRNA
218748	chr8	58882071	58882430	+	0	NA	intron (NM_014729, intron 3 of 8)	intron (NM_014729, intron 3 of 8)	-222397	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
57649	chr12	122524121	122524630	+	0	NA	intron (NR_036436, intron 1 of 9)	intron (NR_036436, intron 1 of 9)	2561	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
216024	chr8	9138571	9139000	+	0	NA	3' UTR (NM_024607, exon 2 of 2).2	3' UTR (NM_024607, exon 2 of 2).2	11873	NM_024607	79660		NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
181092	chr5	36889151	36889250	+	0	NA	intron (NM_133433, intron 1 of 46)	intron (NM_133433, intron 1 of 46)	12431	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
49064	chr12	14409971	14410380	+	0	NA	intron (NM_181352, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	24894	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
226295	chr9	68356401	68357680	+	0	NA	5' UTR (NM_021965, exon 1 of 11)	5' UTR (NM_021965, exon 1 of 11)	429	NM_021965	5239		NM_021965	ENSG00000154330	PGM5	PGMRP	phosphoglucomutase 5	protein-coding
233081	chr9	137102101	137102380	+	0	NA	intron (NM_016219, intron 8 of 12)	intron (NM_016219, intron 8 of 12)	12493	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
89092	chr16	88481251	88481550	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	12482	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
124363	chr19	58354851	58355230	+	0	NA	non-coding (NR_015380, exon 4 of 4)	non-coding (NR_015380, exon 4 of 4)	-1548	NM_130786	1		NM_130786	ENSG00000121410	A1BG	A1B|ABG|GAB|HYST2477	alpha-1-B glycoprotein	protein-coding
88517	chr16	85329251	85329750	+	0	NA	Intergenic	Intergenic	-23175	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
181149	chr5	38809771	38809950	+	0	NA	intron (NR_109951, intron 1 of 3)	intron (NR_109951, intron 1 of 3)	35969	NR_109951	101929768		NR_109951		OSMR-DT	CTD-2127H9.1|OSMR-AS1	OSMR divergent transcript	ncRNA
149812	chr21	34996451	34996750	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	42826	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
150620	chr21	43379221	43379730	+	0	NA	Intergenic	Intergenic	-17126	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
121500	chr19	47158911	47160130	+	0	NA	intron (NR_027280, intron 5 of 8)	intron (NR_027280, intron 5 of 8)	28685	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
201054	chr6	142331121	142331580	+	0	NA	intron (NM_001032394, intron 2 of 24)	intron (NM_001032394, intron 2 of 24)	29343	NM_198569	57211		NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
50732	chr12	48983121	48984400	+	0	NA	Intergenic	Intergenic	5438	NM_005430	7471		NM_005430	ENSG00000125084	WNT1	BMND16|INT1|OI15	Wnt family member 1	protein-coding
138053	chr2	201446851	201447800	+	0	NA	intron (NM_015049, intron 1 of 15)	L2c|LINE|L2	4133	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
134913	chr2	149601521	149601800	+	0	NA	intron (NR_110240, intron 1 of 2)	L1MEc|LINE|L1	-13885	NM_015702	27249		NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	metabolism of cobalamin associated D	protein-coding
197713	chr6	85866051	85866150	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-187367	NR_003038	387066		NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG	small nucleolar RNA host gene 5	ncRNA
220103	chr8	94455921	94456530	+	0	NA	intron (NM_001205262, intron 3 of 3)	intron (NM_001205262, intron 3 of 3)	18890	NM_001205262	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
58326	chr12	131298651	131298950	+	0	NA	promoter-TSS (NR_135045)	promoter-TSS (NR_135045)	-828	NR_135045	107161159		NR_135045	ENSG00000248703	LINC02415	-	long intergenic non-protein coding RNA 2415	ncRNA
47547	chr12	4285421	4285900	+	0	NA	intron (NM_001759, intron 3 of 4)	L1ME4c|LINE|L1	-9476	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
74310	chr15	58313071	58313750	+	0	NA	Intergenic	MIRb|SINE|MIR	-118581	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
113533	chr19	10140121	10140380	+	0	NA	exon (NM_001379, exon 32 of 40)	exon (NM_001379, exon 32 of 40)	-20351	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
77846	chr15	88655471	88656450	+	0	NA	non-coding (NR_130134, exon 3 of 3)	non-coding (NR_130134, exon 3 of 3)	16944	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
160009	chr3	18391451	18391850	+	0	NA	intron (NM_001322873, intron 7 of 10)	intron (NM_001322873, intron 7 of 10)	33689	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
206826	chr7	37309601	37309800	+	0	NA	intron (NM_014800, intron 4 of 21)	MLT1O|LTR|ERVL-MaLR	43968	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
134282	chr2	135819351	135819530	+	0	NA	promoter-TSS (NR_045486)	promoter-TSS (NR_045486)	-751	NR_045486	100507600		NR_045486	ENSG00000226806	LCT-AS1	-	LCT antisense RNA 1	ncRNA
222780	chr8	141985721	141985980	+	0	NA	Intergenic	Intergenic	-190489	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
104528	chr17	81246221	81246480	+	0	NA	exon (NM_001037984, exon 16 of 16)	exon (NM_001037984, exon 16 of 16)	6436	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
55303	chr12	103548621	103548930	+	0	NA	non-coding (NR_110103, exon 2 of 5)	non-coding (NR_110103, exon 2 of 5)	981	NR_110103	101929084		NR_110103	ENSG00000257762	LINC02401	-	long intergenic non-protein coding RNA 2401	ncRNA
112757	chr19	7396401	7396930	+	0	NA	intron (NM_015318, intron 1 of 20)	AluSc|SINE|Alu	1520	NM_015318	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
127016	chr2	36960201	36960400	+	0	NA	intron (NM_003162, intron 1 of 17)	X7B_LINE|LINE|CR1	6236	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
6116	chr1	27343101	27344230	+	0	NA	intron (NM_032872, intron 1 of 14)	intron (NM_032872, intron 1 of 14)	1643	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
36501	chr11	6403771	6403930	+	0	NA	intron (NR_047512, intron 2 of 13)	intron (NR_047512, intron 2 of 13)	841	NM_001257325	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
102348	chr17	75503751	75504850	+	0	NA	exon (NM_020753, exon 14 of 20)	exon (NM_020753, exon 14 of 20)	5590	NM_001142643	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
216942	chr8	22917351	22917650	+	0	NA	intron (NM_001363233, intron 3 of 6)	intron (NM_001363233, intron 3 of 6)	10414	NM_144962	157310		NM_144962	ENSG00000134020	PEBP4	CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4	phosphatidylethanolamine binding protein 4	protein-coding
124069	chr19	55604611	55607180	+	0	NA	intron (NM_001195605, intron 1 of 1)	intron (NM_001195605, intron 1 of 1)	248	NM_001195605	100507290		NM_001195605	ENSG00000261221	ZNF865	-	zinc finger protein 865	protein-coding
204984	chr7	6407551	6408250	+	0	NA	Intergenic	AluSx1|SINE|Alu	33373	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
139125	chr2	218990001	218990600	+	0	NA	exon (NM_057093, exon 4 of 4)	exon (NM_057093, exon 4 of 4)	3122	NM_057093	1412		NM_057093	ENSG00000163499	CRYBA2	CTRCT42	crystallin beta A2	protein-coding
24018	chr1	235264521	235264780	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-62566	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
302	chr1	963871	964550	+	0	NA	intron (NM_198317, intron 10 of 11)	CpG-23	-2272	NM_001367552	84069		NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
147044	chr20	53654301	53654500	+	0	NA	Intergenic	AluSx4|SINE|Alu	46046	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
171817	chr4	666771	666930	+	0	NA	intron (NM_001350155, intron 16 of 17)	intron (NM_001350155, intron 16 of 17)	7426	NM_007100	521		NM_007100	ENSG00000169020	ATP5ME	ATP5I|ATP5K	ATP synthase membrane subunit e	protein-coding
7261	chr1	32359751	32360400	+	0	NA	Intergenic	Intergenic	2168	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
166460	chr3	114218821	114219180	+	0	NA	Intergenic	Intergenic	18578	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
197614	chr6	82270801	82271080	+	0	NA	Intergenic	Intergenic	-23196	NM_015525	25998		NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI	inhibitor of Bruton tyrosine kinase	protein-coding
105770	chr18	2793451	2793750	+	0	NA	intron (NM_015295, intron 45 of 47)	AluY|SINE|Alu	-53406	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
199483	chr6	118621171	118621530	+	0	NA	intron (NM_206921, intron 2 of 5)	HERV30-int|LTR|ERV1	30241	NM_206921	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
156112	chr22	40090701	40091500	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluY|SINE|Alu	46283	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
116192	chr19	17468671	17472400	+	0	NA	promoter-TSS (NM_198580)	promoter-TSS (NM_198580)	11	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
231259	chr9	129997601	129998000	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluJo|SINE|Alu	45389	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
101257	chr17	66311601	66311800	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	9087	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
141075	chr2	238283271	238283430	+	0	NA	intron (NM_022817, intron 1 of 22)	LTR16D|LTR|ERVL	5260	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
52910	chr12	57229021	57230500	+	0	NA	promoter-TSS (NM_001166359)	promoter-TSS (NM_001166359)	49	NR_029417	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
33727	chr10	122295301	122295500	+	0	NA	intron (NM_144587, intron 7 of 15)	intron (NM_144587, intron 7 of 15)	24104	NM_001318189	118663		NM_144587	ENSG00000138152	BTBD16	C10orf87	BTB domain containing 16	protein-coding
178887	chr4	155909851	155909950	+	0	NA	intron (NM_005651, intron 5 of 11)	(CTCTC)n|Simple_repeat|Simple_repeat	6204	NM_005651	6999		NM_005651	ENSG00000151790	TDO2	HYPTRP|TDO|TO|TPH2|TRPO	tryptophan 2,3-dioxygenase	protein-coding
32143	chr10	101288651	101288950	+	0	NA	Intergenic	Intergenic	-25250	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
20918	chr1	202187851	202188200	+	0	NA	intron (NR_002930, intron 20 of 21)	intron (NR_002930, intron 20 of 21)	-5965	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
79681	chr16	1254871	1255380	+	0	NA	promoter-TSS (NM_012217)	promoter-TSS (NM_012217)	-944	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
183196	chr5	76037601	76038000	+	0	NA	Intergenic	L1PA3|LINE|L1	-45583	NM_001297716	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
228494	chr9	100084171	100084330	+	0	NA	intron (NM_015051, intron 1 of 11)	intron (NM_015051, intron 1 of 11)	14750	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
166791	chr3	122533821	122534350	+	0	NA	3' UTR (NM_001146106, exon 10 of 10)	3' UTR (NM_001146106, exon 10 of 10)	-19146	NM_002264	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
116049	chr19	17211101	17212500	+	0	NA	intron (NM_001130065, intron 39 of 39)	CpG	-3557	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
37709	chr11	30322771	30323730	+	0	NA	intron (NM_152316, intron 1 of 3)	CpG	146	NM_152316	120534		NM_152316	ENSG00000152219	ARL14EP	ARF7EP|C11orf46|dJ299F11.1	ADP ribosylation factor like GTPase 14 effector protein	protein-coding
4124	chr1	19325401	19325880	+	0	NA	intron (NR_109848, intron 5 of 9)	intron (NR_109848, intron 5 of 9)	13314	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
224962	chr9	33052601	33053500	+	0	NA	intron (NM_018225, intron 10 of 11)	intron (NM_018225, intron 10 of 11)	23624	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
181176	chr5	39074001	39075240	+	0	NA	promoter-TSS (NM_152756)	promoter-TSS (NM_152756)	-221	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
184455	chr5	100534751	100536000	+	0	NA	promoter-TSS (NM_198507)	promoter-TSS (NM_198507)	1	NM_198507	345757		NM_198507	ENSG00000174132	FAM174A	HGS_RE408|NS5ATP6|TMEM157|UNQ1912	family with sequence similarity 174 member A	protein-coding
44873	chr11	114216801	114217150	+	0	NA	intron (NM_001354751, intron 4 of 6)	L2c|LINE|L2	-40831	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
62893	chr13	110801271	110801430	+	0	NA	Intergenic	Intergenic	11734	NR_135280	283486		NR_135280	ENSG00000259831	LINC00567	-	long intergenic non-protein coding RNA 567	ncRNA
185053	chr5	115888151	115888250	+	0	NA	intron (NM_001364122, intron 3 of 3)	intron (NM_001364122, intron 3 of 3)	45713	NR_157087	1176		NM_001284	ENSG00000177879	AP3S1	CLAPS3|Sigma3A	adaptor related protein complex 3 subunit sigma 1	protein-coding
226413	chr9	70427671	70427830	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-13093	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
151047	chr21	44655521	44656030	+	0	NA	intron (NM_144991, intron 1 of 11)	intron (NM_144991, intron 1 of 11)	-1116	NM_198698	386684		NM_198698	ENSG00000212933	KRTAP12-4	KRTAP12.4	keratin associated protein 12-4	protein-coding
196308	chr6	43056801	43057000	+	0	NA	intron (NM_001300848, intron 2 of 5)	AluY|SINE|Alu	2534	NM_001300848	51069		NM_015950	ENSG00000112651	MRPL2	CGI-22|MRP-L14|RPML14|uL2m	mitochondrial ribosomal protein L2	protein-coding
62922	chr13	111166721	111167400	+	0	NA	intron (NM_001354057, intron 3 of 18)	intron (NM_001354057, intron 3 of 18)	13394	NM_001330598	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
171311	chr3	195966171	195966800	+	0	NA	intron (NR_003264, intron 14 of 16)	AluSz|SINE|Alu	23794	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
143095	chr20	23334171	23334330	+	0	NA	Intergenic	Intergenic	-16541	NM_013248	29107		NM_013248	ENSG00000132661	NXT1	MTR2|P15	nuclear transport factor 2 like export factor 1	protein-coding
78744	chr15	98860701	98861100	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	76474	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
157451	chr22	45246401	45247650	+	0	NA	Intergenic	Intergenic	-6131	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
65439	chr14	51419421	51420230	+	0	NA	Intergenic	Intergenic	-22690	NR_146549	105370496		NR_146549	ENSG00000258537	LINC02310	-	long intergenic non-protein coding RNA 2310	ncRNA
1068	chr1	1912601	1913580	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2170	NM_001330313	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
61431	chr13	51827421	51828150	+	0	NA	intron (NM_001351003, intron 2 of 4)	MLT1K|LTR|ERVL-MaLR	17392	NM_001351003	283521		NM_178515	ENSG00000281106	TMEM272	LINC00282|NCRNA00282	transmembrane protein 272	protein-coding
136575	chr2	177906071	177906400	+	0	NA	intron (NM_016953, intron 2 of 19)	intron (NM_016953, intron 2 of 19)	16602	NM_001077358	50940		NM_016953	ENSG00000128655	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
14969	chr1	147958801	147959280	+	0	NA	intron (NM_016334, intron 7 of 13)	intron (NM_016334, intron 7 of 13)	30620	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
147450	chr20	58984001	58984200	+	0	NA	intron (NM_198976, intron 1 of 14)	intron (NM_198976, intron 1 of 14)	2844	NM_198976	51497		NM_016397	ENSG00000101158	NELFCD	HSPC130|NELF-C|NELF-D|TH1|TH1L	negative elongation factor complex member C/D	protein-coding
164280	chr3	57585621	57585880	+	0	NA	intron (NM_001660, intron 1 of 5)	AluSx|SINE|Alu	11594	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
189362	chr5	172461071	172461230	+	0	NA	Intergenic	L2a|LINE|L2	-6625	NM_001017995	285590		NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
64583	chr14	24734921	24735230	+	0	NA	Intergenic	Intergenic	-100885	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
203515	chr7	710321	710580	+	0	NA	intron (NM_001164759, intron 2 of 10)	intron (NM_001164759, intron 2 of 10)	2074	NM_002735	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
99546	chr17	50372171	50373430	+	0	NA	promoter-TSS (NM_001166131)	promoter-TSS (NM_001166131)	384	NM_016504	51264		NM_016504	ENSG00000108826	MRPL27	L27mt|bL27m	mitochondrial ribosomal protein L27	protein-coding
178381	chr4	146637001	146637650	+	0	NA	Intergenic	CpG	-1568	NM_004575	5458		NM_004575	ENSG00000151615	POU4F2	BRN3.2|BRN3B|Brn-3b	POU class 4 homeobox 2	protein-coding
31784	chr10	98261851	98261950	+	0	NA	intron (NM_032211, intron 3 of 14)	intron (NM_032211, intron 3 of 14)	6294	NM_032211	84171		NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
176899	chr4	102794771	102794930	+	0	NA	3' UTR (NM_181893, exon 7 of 7)	3' UTR (NM_181893, exon 7 of 7)	17813	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
97959	chr17	45238301	45238500	+	0	NA	intron (NM_005892, intron 9 of 26)	L2a|LINE|L2	-9525	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
89322	chr16	88734501	88735130	+	0	NA	intron (NM_001142864, intron 14 of 50)	intron (NM_001142864, intron 14 of 50)	3635	NR_103774	100289580		NM_207451		HSALR1	-	HSP90AB1 associated lncRNA 1	ncRNA
120061	chr19	42070851	42071050	+	0	NA	intron (NM_001330519, intron 1 of 1)	intron (NM_001330519, intron 1 of 1)	2473	NM_001330519	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
233814	chrX	1471591	1472900	+	0	NA	intron (NM_178129, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	-18483	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
227580	chr9	92328101	92328300	+	0	NA	intron (NM_001286969, intron 1 of 6)	intron (NM_001286969, intron 1 of 6)	2247	NM_001012267	401541		NM_001012267	ENSG00000188312	CENPP	CENP-P	centromere protein P	protein-coding
59209	chr13	23319671	23320200	+	0	NA	intron (NM_001378244, intron 6 of 7)	intron (NM_001378244, intron 6 of 7)	55573	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
228006	chr9	95552801	95553600	+	0	NA	Intergenic	CpG	-36229	NM_001083602	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
106874	chr18	24176851	24177030	+	0	NA	intron (NM_080597, intron 21 of 27)	L1ME1|LINE|L1	37456	NM_138644	26256		NM_012189	ENSG00000154040	CABYR	CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2	calcium binding tyrosine phosphorylation regulated	protein-coding
150402	chr21	42312721	42312980	+	0	NA	intron (NM_003226, intron 2 of 2)	intron (NM_003226, intron 2 of 2)	2559	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
192513	chr6	25016951	25017330	+	0	NA	intron (NM_001286446, intron 1 of 13)	AluSx|SINE|Alu	25148	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
46802	chr11	130249471	130249830	+	0	NA	intron (NM_001370222, intron 1 of 4)	L1PA5|LINE|L1	65062	NM_001301099	29068		NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
11536	chr1	91004871	91005500	+	0	NA	intron (NM_032186, intron 1 of 3)	L1M4|LINE|L1	16323	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
130156	chr2	75211401	75211630	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-11995	NM_015727	6869		NM_001058	ENSG00000115353	TACR1	NK1R|NKIR|SPR|TAC1R	tachykinin receptor 1	protein-coding
29054	chr10	67849321	67850380	+	0	NA	Intergenic	CpG	-11662	NM_021800	56521		NM_021800	ENSG00000108176	DNAJC12	HPANBH4|JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
173952	chr4	25912151	25912250	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-1992	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
168611	chr3	149512221	149512600	+	0	NA	Intergenic	Intergenic	37713	NM_004617	7104		NM_004617	ENSG00000169903	TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
105123	chr17	82221101	82221500	+	0	NA	Intergenic	AluJb|SINE|Alu	-7106	NM_001042422	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
12132	chr1	100066801	100067200	+	0	NA	intron (NM_033055, intron 5 of 11)	AluYf1|SINE|Alu	28905	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
229467	chr9	121822171	121822530	+	0	NA	3' UTR (NM_001139442, exon 9 of 9)	3' UTR (NM_001139442, exon 9 of 9)	79565	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
230650	chr9	128696821	128697280	+	0	NA	TTS (NM_003011)	TTS (NM_003011)	-5453	NM_013355	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
124110	chr19	55659651	55659950	+	0	NA	intron (NM_007279, intron 2 of 11)	intron (NM_007279, intron 2 of 11)	4765	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
103883	chr17	79786921	79787430	+	0	NA	3' UTR (NM_005189, exon 5 of 5)	3' UTR (NM_005189, exon 5 of 5)	8997	NM_032647	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
201440	chr6	147297671	147298300	+	0	NA	intron (NM_139244, intron 9 of 25)	L1M2|LINE|L1	-93371	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
164334	chr3	57962001	57962230	+	0	NA	Intergenic	MIRb|SINE|MIR	-46307	NM_001164317	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
227669	chr9	92982051	92982350	+	0	NA	intron (NM_001369951, intron 3 of 17)	L1MA5A|LINE|L1	7731	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
50474	chr12	47772671	47773930	+	0	NA	promoter-TSS (NM_017842)	promoter-TSS (NM_017842)	62	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
194217	chr6	32192451	32193150	+	0	NA	promoter-TSS (NM_001276501).4	promoter-TSS (NM_001276501).4	-157	NM_001276501	63940		NM_022107	ENSG00000213654	GPSM3	AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1	G protein signaling modulator 3	protein-coding
10069	chr1	58773351	58773650	+	0	NA	Intergenic	Intergenic	10547	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
224616	chr9	20511671	20511830	+	0	NA	intron (NM_001286691, intron 2 of 10)	(TACA)n|Simple_repeat|Simple_repeat	-9408	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
172364	chr4	1744401	1745150	+	0	NA	exon (NM_006342, exon 15 of 16)	exon (NM_006342, exon 15 of 16)	23254	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
70767	chr14	103449821	103450080	+	0	NA	intron (NM_002376, intron 4 of 15)	intron (NM_002376, intron 4 of 15)	64535	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
136462	chr2	177161721	177162130	+	0	NA	Intergenic	UCON4|Unknown|Unknown	50486	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
173602	chr4	10635831	10635950	+	0	NA	intron (NM_052964, intron 2 of 18)	intron (NM_052964, intron 2 of 18)	48878	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
161681	chr3	43371321	43372050	+	0	NA	intron (NM_001346463, intron 12 of 12)	intron (NM_001346463, intron 12 of 12)	-19723	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
117557	chr19	21079701	21080100	+	0	NA	Intergenic	(AAAC)n|Simple_repeat|Simple_repeat	-2247	NR_117086	148206		NM_182515	ENSG00000160352	ZNF714	-	zinc finger protein 714	protein-coding
164001	chr3	53165901	53166450	+	0	NA	intron (NM_001316327, intron 2 of 18)	intron (NM_001316327, intron 2 of 18)	-2528	NM_001354678	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
29542	chr10	71212251	71213180	+	0	NA	5' UTR (NM_001244889, exon 1 of 16)	5' UTR (NM_001244889, exon 1 of 16)	145	NM_001244889	219699		NM_170744	ENSG00000107731	UNC5B	UNC5H2|p53RDL1	unc-5 netrin receptor B	protein-coding
8651	chr1	41801501	41801700	+	0	NA	intron (NM_024503, intron 1 of 8)	AluYh3|SINE|Alu	117322	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
230900	chr9	129234471	129234830	+	0	NA	Intergenic	Intergenic	-47766	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
8914	chr1	43980951	43981730	+	0	NA	exon (NM_001005417, exon 2 of 7)	exon (NM_001005417, exon 2 of 7)	835	NM_001005417	8704		NM_003780	ENSG00000117411	B4GALT2	B4Gal-T2|B4Gal-T3|beta4Gal-T2	beta-1,4-galactosyltransferase 2	protein-coding
116076	chr19	17240371	17241000	+	0	NA	exon (NM_005234, exon 2 of 4)	exon (NM_005234, exon 2 of 4)	4657	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
208851	chr7	73705371	73705900	+	0	NA	intron (NM_001165903, intron 3 of 9)	intron (NM_001165903, intron 3 of 9)	-5682	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
222852	chr8	142625601	142625800	+	0	NA	Intergenic	Intergenic	-11221	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
83034	chr16	22311301	22312080	+	0	NA	intron (NM_018119, intron 6 of 20).2	AluJo|SINE|Alu	14281	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
26112	chr10	13371851	13372300	+	0	NA	Intergenic	Intergenic	-23777	NM_001195602	22929		NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
84378	chr16	30279971	30280330	+	0	NA	Intergenic	Intergenic	-31737	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
38442	chr11	45252401	45252650	+	0	NA	exon (NM_020826, exon 4 of 6)	exon (NM_020826, exon 4 of 6)	33816	NM_001247987	57586		NM_020826	ENSG00000019505	SYT13	-	synaptotagmin 13	protein-coding
86743	chr16	67643701	67643900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1344	NM_001317026	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
10603	chr1	67534871	67535030	+	0	NA	Intergenic	MIRc|SINE|MIR	-104548	NM_001018069	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
133830	chr2	127965171	127965330	+	0	NA	intron (NM_024545, intron 14 of 19)	AluSc|SINE|Alu	62045	NM_001145928	79595		NM_024545	ENSG00000136715	SAP130	-	Sin3A associated protein 130	protein-coding
92826	chr17	16196471	16196630	+	0	NA	intron (NM_006311, intron 1 of 45)	AluY|SINE|Alu	-1911	NM_001190438	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
183072	chr5	73596801	73597000	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-29258	NM_001080479	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
150174	chr21	39188771	39188930	+	0	NA	3' UTR (NM_033656, exon 41 of 41)	3' UTR (NM_033656, exon 41 of 41)	-5336	NM_203433	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
144629	chr20	35930851	35931150	+	0	NA	intron (NM_016436, intron 14 of 17)	intron (NM_016436, intron 14 of 17)	23502	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
6450	chr1	28247001	28247990	+	0	NA	Intergenic	CpG	11371	NM_016311	93974		NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
71482	chr14	105974001	105974200	+	0	NA	Intergenic	Intergenic	-1831	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
63694	chr14	21094821	21095080	+	0	NA	intron (NM_001102454, intron 1 of 4)	L3b|LINE|CR1	3705	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
69415	chr14	94064271	94064650	+	0	NA	intron (NM_020414, intron 2 of 8).2	MER21C|LTR|ERVL	16742	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
224134	chr9	4739671	4739830	+	0	NA	intron (NM_001199853, intron 1 of 4)	AluSc8|SINE|Alu	1452	NM_001199852	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
49998	chr12	42238001	42239230	+	0	NA	promoter-TSS (NM_005748)	promoter-TSS (NM_005748)	-247	NM_001320080	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
151229	chr21	45264501	45265150	+	0	NA	non-coding (NR_004858, exon 10 of 10)	non-coding (NR_004858, exon 10 of 10)	23070	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
96116	chr17	39642201	39642400	+	0	NA	intron (NM_001165938, intron 1 of 13)	intron (NM_001165938, intron 1 of 13)	5156	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
36429	chr11	4539671	4539830	+	0	NA	Intergenic	Intergenic	-5441	NM_001004137	119772		NM_001004137	ENSG00000197790	OR52M1	OR11-11|OR52M1P|OR52M3P	olfactory receptor family 52 subfamily M member 1	protein-coding
196971	chr6	53059901	53060100	+	0	NA	intron (NM_001375400, intron 1 of 14)	L2b|LINE|L2	1824	NM_001375398	22858		NM_014920	ENSG00000112144	CILK1	ECO|EJM10|ICK|LCK2|MRK|hICK	ciliogenesis associated kinase 1	protein-coding
676	chr1	1379921	1380180	+	0	NA	Intergenic	Intergenic	-4843	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
174186	chr4	36333451	36333780	+	0	NA	intron (NR_165630, intron 9 of 10)	intron (NR_165630, intron 9 of 10)	51999	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
208965	chr7	74192471	74193030	+	0	NA	intron (NM_022170, intron 5 of 6)	AluSx|SINE|Alu	1552	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
76219	chr15	73923851	73925080	+	0	NA	intron (NR_040068, intron 1 of 2)	intron (NR_040068, intron 1 of 2)	-1997	NM_005576	4016		NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase like 1	protein-coding
158344	chr22	50456071	50456330	+	0	NA	intron (NM_002972, intron 31 of 40)	intron (NM_002972, intron 31 of 40)	18835	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
194030	chr6	31833201	31833530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1551	NR_160952	50854		NM_016947	ENSG00000204387	SNHG32	C6orf48|D6S57|G8	small nucleolar RNA host gene 32	ncRNA
185359	chr5	127313901	127314250	+	0	NA	intron (NM_001308119, intron 2 of 14)	intron (NM_001308119, intron 2 of 14)	23279	NM_032446	84466		NM_032446	ENSG00000145794	MEGF10	CMYP10A|CMYP10B|EMARDD|SR-F3	multiple EGF like domains 10	protein-coding
60450	chr13	41014971	41016100	+	0	NA	intron (NM_001370332, intron 1 of 10)	intron (NM_001370332, intron 1 of 10)	3781	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
58096	chr12	124713221	124714150	+	0	NA	Intergenic	L1MB4|LINE|L1	125986	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
22993	chr1	226107371	226108480	+	0	NA	Intergenic	L2a|LINE|L2	24350	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
43441	chr11	77788001	77788600	+	0	NA	intron (NM_016578, intron 1 of 15)	L1MEc|LINE|L1	32534	NM_016578	51773		NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
229838	chr9	125822671	125823390	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	74847	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
51575	chr12	52612921	52613380	+	0	NA	intron (NR_126005, intron 2 of 2)	intron (NR_126005, intron 2 of 2)	3299	NR_126005	100127967		NR_126005	ENSG00000257495	KRT73-AS1	-	KRT73 antisense RNA 1	ncRNA
115675	chr19	16181371	16181730	+	0	NA	Intergenic	AluSz|SINE|Alu	-3860	NM_014077	26017		NM_014077	ENSG00000105058	FAM32A	OTAG-12|OTAG12	family with sequence similarity 32 member A	protein-coding
213305	chr7	135157601	135157800	+	0	NA	intron (NM_018295, intron 1 of 1)	L1M2a1|LINE|L1	9628	NM_018295	55281		NM_018295	ENSG00000146859	TMEM140	-	transmembrane protein 140	protein-coding
22822	chr1	225155671	225155830	+	0	NA	intron (NM_001367479, intron 34 of 85)	intron (NM_001367479, intron 34 of 85)	226075	NM_001367479	127602		NM_001373	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein axonemal heavy chain 14	protein-coding
175973	chr4	81488871	81489180	+	0	NA	Intergenic	Intergenic	-17118	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
1501	chr1	2772321	2773030	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	28193	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
84667	chr16	30750951	30751800	+	0	NA	intron (NM_000294, intron 3 of 9)	intron (NM_000294, intron 3 of 9)	2950	NM_000294	5261		NM_000294	ENSG00000156873	PHKG2	GSD9C	phosphorylase kinase catalytic subunit gamma 2	protein-coding
83817	chr16	28837471	28838150	+	0	NA	TTS (NM_007245)	TTS (NM_007245)	6197	NR_039872	100616256		NR_039872	ENSG00000283845	MIR4721	-	microRNA 4721	ncRNA
21868	chr1	207646471	207646630	+	0	NA	intron (NM_175710, intron 1 of 11)	AluJb|SINE|Alu	1417	NM_175710	1379		NM_175710	ENSG00000197721	CR1L	-	complement C3b/C4b receptor 1 like	protein-coding
155520	chr22	38691871	38693000	+	0	NA	intron (NM_014876, intron 2 of 4)	intron (NM_014876, intron 2 of 4)	8508	NM_001360236	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
201402	chr6	145865101	145865850	+	0	NA	intron (NR_038246, intron 2 of 2)	MLT1A|LTR|ERVL-MaLR	50599	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
128699	chr2	61543101	61543500	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-4944	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
225765	chr9	37329671	37329850	+	0	NA	intron (NM_001289119, intron 6 of 8)	intron (NM_001289119, intron 6 of 8)	-92936	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
129216	chr2	68230821	68231280	+	0	NA	intron (NM_000945, intron 1 of 5)	L1MDa|LINE|L1	21482	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
49042	chr12	14386271	14386500	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	1104	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
34112	chr10	126042971	126043130	+	0	NA	exon (NM_001288973, exon 18 of 23)	exon (NM_001288973, exon 18 of 23)	-69777	NR_102707	101410540		NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
211725	chr7	106959771	106960050	+	0	NA	Intergenic	Intergenic	-84795	NM_002736	5577		NM_002736	ENSG00000005249	PRKAR2B	PRKAR2|RII-BETA	protein kinase cAMP-dependent type II regulatory subunit beta	protein-coding
13228	chr1	112671251	112671550	+	0	NA	3' UTR (NM_006135, exon 10 of 10)	3' UTR (NM_006135, exon 10 of 10)	-2912	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
173640	chr4	13528701	13529600	+	0	NA	intron (NR_034054, intron 1 of 3)	MIR3|SINE|MIR	2267	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
88505	chr16	85302951	85303850	+	0	NA	Intergenic	Intergenic	2925	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
140441	chr2	233145851	233146350	+	0	NA	intron (NM_001017915, intron 6 of 26).2	MIR|SINE|MIR	85758	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
230942	chr9	129415421	129416230	+	0	NA	Intergenic	MIRc|SINE|MIR	-72835	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
114326	chr19	12062651	12062950	+	0	NA	Intergenic	MER83|LTR|ERV1	-1931	NR_134326	284391		NM_001136501	ENSG00000223547	ZNF844	-	zinc finger protein 844	protein-coding
49554	chr12	26830901	26831500	+	0	NA	intron (NM_002223, intron 1 of 56)	intron (NM_002223, intron 1 of 56)	1994	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
150440	chr21	42448801	42449000	+	0	NA	Intergenic	Intergenic	44998	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
16682	chr1	155194101	155195400	+	0	NA	promoter-TSS (NR_030281)	promoter-TSS (NR_030281)	-427	NR_030281	693235		NR_030281	ENSG00000284586	MIR92B	MIRN92B|hsa-mir-92b|mir-92b	microRNA 92b	ncRNA
112546	chr19	6537451	6537550	+	0	NA	Intergenic	AluSz6|SINE|Alu	6474	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
215853	chr8	7227621	7228300	+	0	NA	non-coding (NR_168401, exon 1 of 3)	non-coding (NR_168401, exon 1 of 3)	228	NR_168401	101928095		NR_168401		LOC101928095	-	uncharacterized LOC101928095	ncRNA
25169	chr10	5384021	5384380	+	0	NA	Intergenic	Intergenic	19234	NM_053049	114131		NM_053049	ENSG00000178473	UCN3	SCP|SPC|UCNIII	urocortin 3	protein-coding
71599	chr14	106586101	106586500	+	0	NA	Intergenic	Intergenic	103861	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
75591	chr15	67091101	67092180	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	26038	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
193223	chr6	29845171	29845680	+	0	NA	Intergenic	LTR10F|LTR|ERV1	17600	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
100244	chr17	59362231	59363280	+	0	NA	intron (NM_001005404, intron 2 of 4)	intron (NM_001005404, intron 2 of 4)	-3328	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
21161	chr1	203744021	203744500	+	0	NA	TTS (NM_001684)	TTS (NM_001684)	13683	NR_046213	84719		NM_032633		LINC00260	C1orf217|NCRNA00260	long intergenic non-protein coding RNA 260	ncRNA
166928	chr3	125115771	125116180	+	0	NA	intron (NM_024628, intron 8 of 13)	intron (NM_024628, intron 8 of 13)	35577	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
32391	chr10	102424221	102424500	+	0	NA	exon (NM_024040, exon 5 of 9)	exon (NM_024040, exon 5 of 9)	-4426	NM_001270965	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
193347	chr6	30216351	30216650	+	0	NA	Intergenic	Intergenic	-3094	NM_001242783	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
189671	chr5	176390971	176391950	+	0	NA	TTS (NR_157088)	TTS (NR_157088)	-2533	NM_001256539	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
92292	chr17	8092571	8092930	+	0	NA	Intergenic	L2a|LINE|L2	4694	NR_036201	100422983		NR_036201	ENSG00000264005	MIR4314	-	microRNA 4314	ncRNA
145521	chr20	44070101	44071480	+	0	NA	Intergenic	Intergenic	116398	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
48377	chr12	9449851	9450930	+	0	NA	intron (NR_153413, intron 1 of 45)	LTR12C|LTR|ERV1	2103	NR_153413	408186		NR_153413		LOC408186	OVOS|OVOS1	alpha-2-macroglobulin like 1 pseudogene	pseudo
33907	chr10	124573901	124574100	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	112177	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
24429	chr1	243527671	243527980	+	0	NA	intron (NM_005465, intron 12 of 13)	AluJo|SINE|Alu	181649	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
48668	chr12	10503301	10503730	+	0	NA	Intergenic	L1PA17|LINE|L1	-2378	NM_001357731	255308		NM_001357731	ENSG00000180574	EIF2S3B	EIF2S3L|eIF-2gA|eIF2gA	eukaryotic translation initiation factor 2 subunit gamma B	protein-coding
80512	chr16	2749151	2749250	+	0	NA	intron (NR_027275, intron 2 of 5)	intron (NR_027275, intron 2 of 5)	3400	NR_027275	100128788		NR_027274	ENSG00000205913	SRRM2-AS1	-	SRRM2 antisense RNA 1	ncRNA
154778	chr22	36542021	36542450	+	0	NA	Intergenic	Intergenic	-13069	NR_156418	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
130049	chr2	74429871	74430430	+	0	NA	intron (NM_001015056, intron 5 of 11)	intron (NM_001015056, intron 5 of 11)	8420	NM_032118	84058		NM_032118	ENSG00000005448	WDR54	-	WD repeat domain 54	protein-coding
169186	chr3	156703971	156704330	+	0	NA	intron (NM_001184718, intron 5 of 5)	MIR|SINE|MIR	27486	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
200047	chr6	129751651	129752480	+	0	NA	Intergenic	Intergenic	-41888	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
202225	chr6	156809051	156809430	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-29509	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
61324	chr13	50428571	50428730	+	0	NA	intron (NR_109974, intron 3 of 6)	intron (NR_109974, intron 3 of 6)	98799	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
37929	chr11	34235251	34235780	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	122495	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
109441	chr19	733371	733530	+	0	NA	intron (NM_002579, intron 5 of 8)	L2b|LINE|L2	-17662	NM_173481	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
121797	chr19	47907371	47908030	+	0	NA	promoter-TSS (NR_004437)	promoter-TSS (NR_004437)	22	NR_024216	100169959		NR_024216		SNAR-A13	-	small NF90 (ILF3) associated RNA A13	snRNA
220738	chr8	102122371	102123500	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	1399	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
89251	chr16	88652801	88653030	+	0	NA	intron (NM_002461, intron 9 of 9)	intron (NM_002461, intron 9 of 9)	-1862	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
93277	chr17	18092751	18092850	+	0	NA	intron (NM_001330144, intron 1 of 12)	MER20B|DNA|hAT-Charlie	4852	NM_001388	1819		NM_001388	ENSG00000108591	DRG2	-	developmentally regulated GTP binding protein 2	protein-coding
178518	chr4	150909201	150909680	+	0	NA	intron (NM_001367550, intron 9 of 56)	L1MB2|LINE|L1	105827	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
237641	chrX	124223501	124224080	+	0	NA	Intergenic	Intergenic	-108870	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
130192	chr2	84450721	84450980	+	0	NA	intron (NM_003849, intron 1 of 8)	intron (NM_003849, intron 1 of 8)	8430	NM_003849	8802		NM_003849	ENSG00000163541	SUCLG1	GALPHA|MTDPS9|SUCLA1	succinate-CoA ligase GDP/ADP-forming subunit alpha	protein-coding
149244	chr21	25640951	25641050	+	0	NA	intron (NM_021219, intron 1 of 9)	intron (NM_021219, intron 1 of 9)	1718	NM_001270407	58494		NM_021219	ENSG00000154721	JAM2	C21orf43|CD322|IBGC8|JAM-B|JAMB|PRO245|VE-JAM|VEJAM	junctional adhesion molecule 2	protein-coding
63189	chr13	113758801	113759900	+	0	NA	intron (NM_001348663, intron 1 of 7)	CpG	124	NM_182614	348013		NM_182614	ENSG00000184497	TMEM255B	FAM70B	transmembrane protein 255B	protein-coding
173996	chr4	26317301	26317500	+	0	NA	intron (NM_001374401, intron 1 of 11)	L2a|LINE|L2	-2346	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
92561	chr17	8991571	8991950	+	0	NA	Intergenic	Intergenic	-26048	NM_001251853	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
80388	chr16	2545371	2545780	+	0	NA	intron (NM_031268, intron 1 of 10)	AluSg4|SINE|Alu	7554	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
22296	chr1	212967801	212968000	+	0	NA	intron (NM_001301056, intron 5 of 7)	intron (NM_001301056, intron 5 of 7)	17359	NM_024749	79805		NM_024749	ENSG00000143494	VASH2	-	vasohibin 2	protein-coding
171588	chr3	197028351	197030680	+	0	NA	intron (NM_033316, intron 1 of 6)	CpG	302	NM_033316	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
222868	chr8	142737651	142737950	+	0	NA	TTS (NM_001363000)	TTS (NM_001363000)	4606	NM_020427	57152		NM_020427	ENSG00000126233	SLURP1	ANUP|ARS|ArsB|LY6-MT|LY6LS|MDM	secreted LY6/PLAUR domain containing 1	protein-coding
75262	chr15	64989051	64990280	+	0	NA	promoter-TSS (NM_001127889)	promoter-TSS (NM_001127889)	-195	NM_001127889	51324		NM_016630	ENSG00000090487	SPG21	ABHD21|ACP33|BM-019|GL010|MAST	SPG21 abhydrolase domain containing, maspardin	protein-coding
4080	chr1	19073971	19075350	+	0	NA	3' UTR (NM_020765, exon 106 of 106)	3' UTR (NM_020765, exon 106 of 106)	-117984	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
213872	chr7	142345171	142346330	+	0	NA	Intergenic	Intergenic	-73501	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
196537	chr6	44001251	44001650	+	0	NA	intron (NR_160955, intron 2 of 3)	intron (NR_160955, intron 2 of 3)	865	NR_160954	221416		NM_153246	ENSG00000181577	LINC03040	C6orf223	long intergenic non-protein coding RNA 3040	ncRNA
144476	chr20	35612971	35613650	+	0	NA	Intergenic	AluSx|SINE|Alu	-2519	NM_003116	6676		NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
136458	chr2	177147201	177147600	+	0	NA	Intergenic	Intergenic	65011	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
167433	chr3	129045771	129046930	+	0	NA	Intergenic	CpG	-14429	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
141155	chr2	239255201	239255400	+	0	NA	intron (NM_006037, intron 2 of 26)	(TG)n|Simple_repeat|Simple_repeat	-50162	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
8129	chr1	39262851	39263180	+	0	NA	intron (NM_012090, intron 5 of 92)	intron (NM_012090, intron 5 of 92)	-146058	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
200229	chr6	131533951	131534950	+	0	NA	Intergenic	Intergenic	-38776	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
132045	chr2	101009671	101010400	+	0	NA	intron (NM_001330348, intron 19 of 19)	AluY|SINE|Alu	7746	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
130227	chr2	84817301	84817700	+	0	NA	intron (NM_001370, intron 76 of 76)	FLAM_A|SINE|Alu	63584	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
117779	chr19	29730301	29730830	+	0	NA	Intergenic	Intergenic	-14776	NM_001256047	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
23231	chr1	227762201	227763850	+	0	NA	intron (NR_136654, intron 2 of 3)	AluJo|SINE|Alu	-23787	NR_168381	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
130343	chr2	85000651	85001030	+	0	NA	intron (NM_020122, intron 1 of 6)	AluJr|SINE|Alu	29679	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
165261	chr3	75214451	75214550	+	0	NA	promoter-TSS (NR_039646).2	promoter-TSS (NR_039646).2	24	NR_039646	100616394		NR_039646	ENSG00000284252	MIR4444-1	MIR4444|hsa-mir-4444-1|miR-4444-1	microRNA 4444-1	ncRNA
229386	chr9	121155471	121155630	+	0	NA	intron (NM_007018, intron 27 of 43)	AluSg|SINE|Alu	33780	NM_001330762	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
148032	chr20	63175951	63176650	+	0	NA	Intergenic	CpG	-2200	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
143783	chr20	32446871	32447030	+	0	NA	3' UTR (NM_001256798, exon 11 of 11)	3' UTR (NM_001256798, exon 11 of 11)	36540	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
47785	chr12	6564471	6564880	+	0	NA	intron (NM_001258309, intron 5 of 16)	AluSq2|SINE|Alu	3616	NM_001258309	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
54484	chr12	92044551	92045250	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	96813	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
173968	chr4	26069371	26069530	+	0	NA	Intergenic	Intergenic	-94008	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
64766	chr14	34614621	34615150	+	0	NA	intron (NR_159357, intron 2 of 12)	AluJo|SINE|Alu	15263	NR_159358	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
96459	chr17	40225151	40225250	+	0	NA	intron (NM_133264, intron 1 of 7)	intron (NM_133264, intron 1 of 7)	5896	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
184578	chr5	102853651	102854550	+	0	NA	intron (NM_001364582, intron 1 of 24)	MIR|SINE|MIR	-11723	NM_138821	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
17386	chr1	156601001	156601900	+	0	NA	promoter-TSS (NM_015590)	promoter-TSS (NM_015590)	29	NM_182679	54865		NM_015590	ENSG00000160818	GPATCH4	GPATC4	G-patch domain containing 4 (gene/pseudogene)	protein-coding
204843	chr7	5776421	5777380	+	0	NA	intron (NM_001377156, intron 1 of 17)	AluSz6|SINE|Alu	4763	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
77153	chr15	79965371	79965530	+	0	NA	intron (NM_004049, intron 1 of 1)	L2a|LINE|L2	5746	NM_001114735	597		NM_004049	ENSG00000140379	BCL2A1	ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1	BCL2 related protein A1	protein-coding
146774	chr20	50909301	50909850	+	0	NA	5' UTR (NM_001282532, exon 1 of 4)	5' UTR (NM_001282532, exon 1 of 4)	216	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
59880	chr13	30675851	30676150	+	0	NA	Intergenic	Intergenic	-37478	NM_001204406	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
182332	chr5	59104701	59104900	+	0	NA	intron (NM_001364603, intron 5 of 15)	intron (NM_001364603, intron 5 of 15)	-65324	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
107995	chr18	58676101	58676550	+	0	NA	intron (NM_173844, intron 1 of 15)	FLAM_C|SINE|Alu	-4452	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
58737	chr12	132600321	132601900	+	0	NA	Intergenic	Intergenic	9472	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
2011	chr1	6788001	6788200	+	0	NA	intron (NR_146202, intron 1 of 4)	intron (NR_146202, intron 1 of 4)	2646	NM_001349609	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
179280	chr4	176792601	176793000	+	0	NA	5' UTR (NM_005429, exon 1 of 7)	5' UTR (NM_005429, exon 1 of 7)	122	NM_005429	7424		NM_005429	ENSG00000150630	VEGFC	Flt4-L|LMPH1D|LMPHM4|VRP	vascular endothelial growth factor C	protein-coding
40721	chr11	64806201	64807050	+	0	NA	intron (NM_001370259, intron 6 of 9)	intron (NM_001370259, intron 6 of 9)	-3411	NM_001307990	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
222896	chr8	142787821	142788080	+	0	NA	Intergenic	Intergenic	-1411	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
12370	chr1	101248671	101248830	+	0	NA	Intergenic	AluJr|SINE|Alu	11731	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
207145	chr7	43416371	43416530	+	0	NA	intron (NM_001287059, intron 7 of 27)	L1PA2|LINE|L1	106092	NR_038276	100506895		NR_038276	ENSG00000231638	LUARIS	SCAT6|lncRNA32	lncRNA upregulator of antiviral response interferon signaling	ncRNA
41410	chr11	66044721	66045930	+	0	NA	exon (NM_033036, exon 2 of 3)	exon (NM_033036, exon 2 of 3)	3836	NM_033036	89792		NM_033036	ENSG00000175229	GAL3ST3	GAL3ST-3|GAL3ST2	galactose-3-O-sulfotransferase 3	protein-coding
155377	chr22	38301921	38302380	+	0	NA	intron (NM_152221, intron 4 of 10)	MIRb|SINE|MIR	15283	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
143684	chr20	32109151	32110500	+	0	NA	promoter-TSS (NM_001363731)	promoter-TSS (NM_001363731)	97	NM_001363731	9777		NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
222437	chr8	134855951	134856450	+	0	NA	intron (NR_125427, intron 1 of 2)	intron (NR_125427, intron 1 of 2)	6265	NR_125427	101927845		NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
33336	chr10	116742121	116743300	+	0	NA	promoter-TSS (NM_025015)	promoter-TSS (NM_025015)	-144	NM_025015	259217		NM_025015	ENSG00000165868	HSPA12A	-	heat shock protein family A (Hsp70) member 12A	protein-coding
32856	chr10	110067071	110067230	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-58769	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
60573	chr13	41668201	41668550	+	0	NA	intron (NM_015058, intron 37 of 44)	intron (NM_015058, intron 37 of 44)	-99980	NR_049803	100847026		NR_049803	ENSG00000284584	MIR5006	-	microRNA 5006	ncRNA
206755	chr7	36689551	36689650	+	0	NA	intron (NM_001177506, intron 1 of 21)	intron (NM_001177506, intron 1 of 21)	34894	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
45357	chr11	118248971	118249600	+	0	NA	intron (NM_198275, intron 1 of 5)	L1ME3A|LINE|L1	3080	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
189358	chr5	172451151	172451450	+	0	NA	intron (NM_001308175, intron 1 of 12)	intron (NM_001308175, intron 1 of 12)	3223	NM_001308175	285590		NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
53361	chr12	64659871	64660330	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-37495	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
168722	chr3	150751751	150752450	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	11069	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
201174	chr6	142951901	142952100	+	0	NA	Intergenic	Intergenic	-6824	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
127008	chr2	36875851	36875950	+	0	NA	intron (NM_003162, intron 10 of 17)	AluY|SINE|Alu	90636	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
61968	chr13	79424051	79424650	+	0	NA	TTS (NR_038991)	TTS (NR_038991)	18041	NR_038991	100505538		NR_038991	ENSG00000227354	RBM26-AS1	-	RBM26 antisense RNA 1	ncRNA
179001	chr4	163554801	163555500	+	0	NA	intron (NM_001166373, intron 6 of 7)	intron (NM_001166373, intron 6 of 7)	58384	NM_017923	55016		NM_017923	ENSG00000145416	MARCHF1	MARCH-I|MARCH1|RNF171	membrane associated ring-CH-type finger 1	protein-coding
1467	chr1	2685751	2686050	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-52884	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
171949	chr4	890621	891080	+	0	NA	intron (NM_001318134, intron 6 of 24)	intron (NM_001318134, intron 6 of 24)	41466	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
87597	chr16	73829871	73830050	+	0	NA	Intergenic	L1PA2|LINE|L1	385561	NR_104657	101928035		NR_104657	ENSG00000261404	PSMD7-DT	-	PSMD7 divergent transcript	ncRNA
230024	chr9	127215371	127215700	+	0	NA	intron (NM_001366400, intron 18 of 18)	MIRb|SINE|MIR	-48127	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
138173	chr2	202641801	202642080	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	6971	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
185720	chr5	132058871	132059630	+	0	NA	Intergenic	Intergenic	-1405	NM_000588	3562		NM_000588	ENSG00000164399	IL3	IL-3|MCGF|MULTI-CSF	interleukin 3	protein-coding
146673	chr20	50513401	50514200	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	3417	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
225839	chr9	38004471	38004630	+	0	NA	intron (NM_003028, intron 2 of 5)	intron (NM_003028, intron 2 of 5)	64677	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
118121	chr19	34732551	34732850	+	0	NA	Intergenic	Intergenic	-1543	NM_001145665	339318		NM_001029997	ENSG00000197841	ZNF181	HHZ181	zinc finger protein 181	protein-coding
40883	chr11	65119751	65119850	+	0	NA	TTS (NM_001997)	TTS (NM_001997)	-2099	NM_014205	741		NM_014205	ENSG00000174276	ZNHIT2	C11orf5|FON	zinc finger HIT-type containing 2	protein-coding
179334	chr4	182846801	182847000	+	0	NA	Intergenic	Intergenic	70353	NM_001351747	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
61094	chr13	48414951	48415630	+	0	NA	intron (NM_001377316, intron 4 of 4)	AluSx1|SINE|Alu	-2177	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
128970	chr2	64652721	64654880	+	0	NA	5' UTR (NM_014755, exon 1 of 2)	5' UTR (NM_014755, exon 1 of 2)	113	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
224958	chr9	33048901	33049100	+	0	NA	intron (NM_018225, intron 10 of 11)	L1MC1|LINE|L1	23727	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
41858	chr11	67169601	67169900	+	0	NA	intron (NM_012308, intron 2 of 20)	(TC)n|Simple_repeat|Simple_repeat	50487	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
220390	chr8	100242801	100243700	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	58943	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
228018	chr9	95751701	95752130	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-123776	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
22485	chr1	221723871	221724230	+	0	NA	intron (NR_111940, intron 1 of 2)	MER21C|LTR|ERVL	12850	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
155871	chr22	39491321	39492450	+	0	NA	3' UTR (NM_002409, exon 2 of 2)	3' UTR (NM_002409, exon 2 of 2)	4661	NM_001098270	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
203194	chr6	167392701	167393100	+	0	NA	Intergenic	Intergenic	-8390	NR_163194	6953		NM_004610	ENSG00000290751	TCP10L3	TCP10|TCP10A	t-complex 10 like 3 (pseudogene)	pseudo
10559	chr1	67170771	67171380	+	0	NA	intron (NM_144701, intron 3 of 10)	intron (NM_144701, intron 3 of 10)	4621	NM_144701	149233		NM_144701	ENSG00000162594	IL23R	PSORS7	interleukin 23 receptor	protein-coding
235550	chrX	47245821	47246130	+	0	NA	intron (NM_001371072, intron 17 of 20)	L2a|LINE|L2	12966	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
145345	chr20	41140621	41141130	+	0	NA	intron (NM_182811, intron 1 of 31)	MIRb|SINE|MIR	-2875	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
45159	chr11	117205201	117205400	+	0	NA	3' UTR (NM_001001522, exon 5 of 5)	3' UTR (NM_001001522, exon 5 of 5)	-3386	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
41151	chr11	65597571	65598550	+	0	NA	3' UTR (NM_002419, exon 10 of 10)	3' UTR (NM_002419, exon 10 of 10)	-2260	NM_033348	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
170296	chr3	184329321	184329800	+	0	NA	intron (NM_198244, intron 25 of 29)	AluSg4|SINE|Alu	3864	NR_003055	692107		NR_003055	ENSG00000212158	SNORD66	HBII-142	small nucleolar RNA, C/D box 66	snoRNA
24501	chr1	244445651	244446480	+	0	NA	intron (NM_001365073, intron 1 of 12)	intron (NM_001365073, intron 1 of 12)	5844	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
221088	chr8	117443321	117443600	+	0	NA	Intergenic	Intergenic	-77253	NM_001282986	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
145870	chr20	45937621	45938300	+	0	NA	intron (NM_022104, intron 2 of 16)	Charlie19a|DNA|hAT-Charlie	3277	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
29564	chr10	71609201	71609430	+	0	NA	intron (NM_001171931, intron 9 of 24)	(CTCTCC)n|Simple_repeat|Simple_repeat	-97395	NR_120672	102723377		NR_120672	ENSG00000223817	CDH23-AS1	C10orf106|NCRNA00223|bA327E2.3	CDH23 antisense RNA 1	ncRNA
224608	chr9	20398321	20398980	+	0	NA	intron (NM_001286691, intron 5 of 10)	intron (NM_001286691, intron 5 of 10)	12588	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
130076	chr2	74492771	74493480	+	0	NA	exon (NM_001376141, exon 12 of 12)	exon (NM_001376141, exon 12 of 12)	4113	NM_001376140	64427		NM_022492	ENSG00000115282	TTC31	-	tetratricopeptide repeat domain 31	protein-coding
201620	chr6	149431801	149432330	+	0	NA	Intergenic	Intergenic	31803	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
4637	chr1	22123171	22123530	+	0	NA	intron (NM_030761, intron 2 of 4)	intron (NM_030761, intron 2 of 4)	19747	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
81634	chr16	10881501	10881900	+	0	NA	intron (NM_001379334, intron 1 of 19)	L1MB3|LINE|L1	2733	NM_001379334	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
36018	chr11	2910321	2910650	+	0	NA	intron (NM_183233, intron 5 of 10)	intron (NM_183233, intron 5 of 10)	-6910	NR_169304	5003		NM_007105	ENSG00000254827	SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	SLC22A18 antisense RNA	ncRNA
101126	chr17	65030651	65031280	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	24809	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
57016	chr12	120639471	120639650	+	0	NA	Intergenic	Intergenic	-1059	NM_001033677	9478		NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
28658	chr10	59904601	59905400	+	0	NA	intron (NM_005436, intron 1 of 8)	intron (NM_005436, intron 1 of 8)	1556	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
125209	chr2	10303501	10304500	+	0	NA	intron (NM_134421, intron 1 of 5)	CpG	300	NM_134421	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
196316	chr6	43075001	43075200	+	0	NA	TTS (NM_201521)	TTS (NM_201521)	-1214	NM_152881	5754		NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
71825	chr15	22167301	22167900	+	0	NA	Intergenic	L1PA13|LINE|L1	-6670	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
78762	chr15	99107651	99108230	+	0	NA	intron (NM_145728, intron 1 of 3)	AluSx1|SINE|Alu	2860	NM_145728	23336		NM_015286	ENSG00000182253	SYNM	DMN|SYN	synemin	protein-coding
184986	chr5	113524971	113525330	+	0	NA	exon (NM_022828, exon 3 of 30)	exon (NM_022828, exon 3 of 30)	11456	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
66665	chr14	63898421	63899200	+	0	NA	intron (NM_015180, intron 1 of 114)	HAL1|LINE|L1	45806	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
233242	chr9	137257671	137258000	+	0	NA	intron (NM_015456, intron 4 of 12)	AluJo|SINE|Alu	2508	NM_015456	25920		NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
112579	chr19	6652721	6653180	+	0	NA	Intergenic	LTR34|LTR|ERV1	17208	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
86030	chr16	57533421	57534620	+	0	NA	intron (NM_033212, intron 1 of 8)	intron (NM_033212, intron 1 of 8)	2551	NM_033212	92922		NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
181056	chr5	36238001	36238400	+	0	NA	intron (NM_001287341, intron 1 of 12)	intron (NM_001287341, intron 1 of 12)	3191	NM_001287340	133686		NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
190923	chr6	2858701	2859980	+	0	NA	intron (NR_033851, intron 1 of 1)	MIRc|SINE|MIR	-5233	NR_039788	100616285		NR_039788	ENSG00000266750	MIR4645	mir-4645	microRNA 4645	ncRNA
82436	chr16	16325851	16326450	+	0	NA	promoter-TSS (NR_103772).2	promoter-TSS (NR_103772).2	-216	NR_103772	100288162		NR_103772		LOC100288162	-	uncharacterized LOC100288162	ncRNA
103944	chr17	79849321	79849780	+	0	NA	Intergenic	Intergenic	-10110	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
138720	chr2	213145621	213146030	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	4612	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
204221	chr7	2528951	2530100	+	0	NA	TTS (NM_001040168)	TTS (NM_001040168)	2451	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
185173	chr5	119353401	119354330	+	0	NA	promoter-TSS (NM_001286813)	promoter-TSS (NM_001286813)	-908	NM_001286813	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
163457	chr3	50609151	50609400	+	0	NA	intron (NM_145071, intron 1 of 2)	intron (NM_145071, intron 1 of 2)	2499	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
66690	chr14	64149971	64150330	+	0	NA	intron (NM_015180, intron 84 of 114)	AluSc8|SINE|Alu	-55025	NR_031677	100313830		NR_031677	ENSG00000221537	MIR548H1	MIR548H-1|MIRN548H1	microRNA 548h-1	ncRNA
186824	chr5	139399501	139400500	+	0	NA	intron (NM_194296, intron 4 of 5)	intron (NM_194296, intron 4 of 5)	4089	NM_194296	202051		NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
211892	chr7	111446151	111446290	+	0	NA	intron (NM_001350961, intron 4 of 7)	L1PA2|LINE|L1	116272	NM_001350960	83943		NM_032549	ENSG00000184903	IMMP2L	IMMP2L-IT1|IMP2|IMP2-LIKE	inner mitochondrial membrane peptidase subunit 2	protein-coding
32021	chr10	101010971	101011130	+	0	NA	intron (NM_001195263, intron 14 of 16)	intron (NM_001195263, intron 14 of 16)	8553	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
81353	chr16	4801421	4803600	+	0	NA	TTS (NM_001324096)	TTS (NM_001324096)	123	NM_024589	79641		NM_024589	ENSG00000067836	ROGDI	KTZS|RAV2|ROGD1	rogdi atypical leucine zipper	protein-coding
109712	chr19	1070951	1071500	+	0	NA	promoter-TSS (NM_001282335)	promoter-TSS (NM_001282335)	15	NM_001282335	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
55237	chr12	101871321	101871580	+	0	NA	Intergenic	AluSx4|SINE|Alu	-6130	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
89771	chr16	89466671	89466830	+	0	NA	intron (NM_001256182, intron 1 of 13)	L1MEc|LINE|L1	23811	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
157332	chr22	44640251	44640550	+	0	NA	Intergenic	Intergenic	-14981	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
93757	chr17	19977051	19978700	+	0	NA	promoter-TSS (NM_001330152)	promoter-TSS (NM_001330152)	-19	NM_001330152	11216		NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A-kinase anchoring protein 10	protein-coding
2143	chr1	8379451	8379750	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	44232	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
110575	chr19	2149621	2150130	+	0	NA	intron (NM_001374799, intron 1 of 31)	intron (NM_001374799, intron 1 of 31)	1691	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
103022	chr17	76996371	76996530	+	0	NA	Intergenic	MER34B|LTR|ERV1	-27251	NR_136417	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
127464	chr2	42215851	42216380	+	0	NA	intron (NM_019063, intron 1 of 22)	AluSx1|SINE|Alu	-45884	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
83491	chr16	27413421	27413880	+	0	NA	intron (NM_181079, intron 2 of 9)	L1MA8|LINE|L1	11476	NM_181078	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
171976	chr4	921721	921980	+	0	NA	intron (NM_005255, intron 1 of 27)	L1MD1|LINE|L1	10466	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
63387	chr13	114061551	114062030	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	16165	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
83805	chr16	28827201	28827400	+	0	NA	intron (NM_148416, intron 6 of 22)	AluJb|SINE|Alu	4252	NM_007245	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
134041	chr2	131112851	131113150	+	0	NA	intron (NM_001309448, intron 1 of 6)	MER21B|LTR|ERVL	8153	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
62702	chr13	102844851	102846200	+	0	NA	promoter-TSS (NM_000123)	promoter-TSS (NM_000123)	-507	NM_000123	2073		NM_000123	ENSG00000134899	ERCC5	COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC	ERCC excision repair 5, endonuclease	protein-coding
123777	chr19	55110051	55110850	+	0	NA	intron (NM_017607, intron 3 of 21)	intron (NM_017607, intron 3 of 21)	7187	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
168895	chr3	152320271	152320780	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	20465	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
126719	chr2	30180471	30180630	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-6884	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
59133	chr13	21426321	21426650	+	0	NA	intron (NM_153251, intron 1 of 11)	L2c|LINE|L2	32818	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
25678	chr10	8415851	8417090	+	0	NA	Intergenic	Intergenic	-148165	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
229501	chr9	122228101	122229230	+	0	NA	promoter-TSS (NM_001242333)	promoter-TSS (NM_001242333)	-232	NM_001242333	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
219554	chr8	78507601	78507980	+	0	NA	Intergenic	Intergenic	-8550	NM_006823	5569		NM_006823	ENSG00000171033	PKIA	PRKACN1	cAMP-dependent protein kinase inhibitor alpha	protein-coding
175235	chr4	56974771	56975550	+	0	NA	intron (NM_032313, intron 1 of 6)	AluJb|SINE|Alu	2446	NM_032313	84273		NM_032313	ENSG00000084092	NOA1	C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1	nitric oxide associated 1	protein-coding
30447	chr10	79073251	79073980	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	4649	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
73376	chr15	42547201	42547400	+	0	NA	exon (NM_153260, exon 4 of 6)	exon (NM_153260, exon 4 of 6)	1493	NM_153260	255252		NM_153260	ENSG00000180979	LRRC57	-	leucine rich repeat containing 57	protein-coding
5673	chr1	26336021	26337000	+	0	NA	intron (NM_001039775, intron 12 of 19)	CpG-706	17620	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
110462	chr19	2009521	2009780	+	0	NA	intron (NM_017797, intron 1 of 8)	AluSx|SINE|Alu	6064	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
44518	chr11	107591031	107591600	+	0	NA	5' UTR (NM_001130037, exon 1 of 11)	5' UTR (NM_001130037, exon 1 of 11)	168	NM_018712	55531		NM_018712	ENSG00000110675	ELMOD1	-	ELMO domain containing 1	protein-coding
214374	chr7	149717121	149718180	+	0	NA	intron (NM_032534, intron 1 of 16)	intron (NM_032534, intron 1 of 16)	2639	NM_032534	84626		NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
89948	chr16	89745051	89745350	+	0	NA	intron (NM_001286167, intron 35 of 42)	intron (NM_001286167, intron 35 of 42)	23663	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
133927	chr2	130380101	130380600	+	0	NA	Intergenic	Intergenic	24294	NM_014369	26469		NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase non-receptor type 18	protein-coding
140712	chr2	234394521	234394780	+	0	NA	Intergenic	Intergenic	59945	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
107482	chr18	47165201	47165600	+	0	NA	intron (NM_016097, intron 1 of 2)	AluSz6|SINE|Alu	10964	NM_016097	51124		NM_016097	ENSG00000134049	IER3IP1	HSPC039|MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
203929	chr7	1534971	1535300	+	0	NA	promoter-TSS (NR_149036)	promoter-TSS (NR_149036)	-255	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
183152	chr5	75057271	75058130	+	0	NA	Intergenic	Intergenic	-5142	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
216900	chr8	22688501	22689130	+	0	NA	3' UTR (NM_001199881, exon 2 of 2)	3' UTR (NM_001199881, exon 2 of 2)	3549	NM_001199880	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
48179	chr12	7994921	7996300	+	0	NA	Intergenic	L2b|LINE|L2	-37106	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
150054	chr21	37383751	37384450	+	0	NA	intron (NM_001347723, intron 1 of 10)	L1MEc|LINE|L1	16543	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
90184	chr17	366951	367480	+	0	NA	Intergenic	L1M4|LINE|L1	-14373	NM_001190411	9501		NM_006987	ENSG00000181031	RPH3AL	NOC2	rabphilin 3A like (without C2 domains)	protein-coding
160190	chr3	23803801	23804000	+	0	NA	TTS (NR_046652)	TTS (NR_046652)	-2055	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
126687	chr2	30141471	30141630	+	0	NA	Intergenic	Intergenic	-5457	NM_001127401	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
198409	chr6	105986801	105987000	+	0	NA	Intergenic	Intergenic	-99436	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
69407	chr14	94054301	94055030	+	0	NA	intron (NM_020414, intron 7 of 8).2	intron (NM_020414, intron 7 of 8).2	26537	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
15530	chr1	150526571	150526930	+	0	NA	Intergenic	AluY|SINE|Alu	10993	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
25367	chr10	6423071	6423380	+	0	NA	intron (NM_001323267, intron 17 of 17)	intron (NM_001323267, intron 17 of 17)	72909	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
38464	chr11	45662871	45663230	+	0	NA	intron (NM_003654, intron 1 of 3)	intron (NM_003654, intron 1 of 3)	2572	NM_003654	8534		NM_003654	ENSG00000175264	CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate sulfotransferase 1	protein-coding
121542	chr19	47243971	47244880	+	0	NA	Intergenic	CpG	-11758	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
116156	chr19	17389421	17389680	+	0	NA	Intergenic	Intergenic	-12208	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
27047	chr10	27108801	27110100	+	0	NA	TTS (NM_014263)	TTS (NM_014263)	-8956	NM_001256053	22852		NM_014915	ENSG00000107890	ANKRD26	THC2|bA145E8.1	ankyrin repeat domain containing 26	protein-coding
40130	chr11	62829421	62830250	+	0	NA	intron (NM_001244666, intron 2 of 10)	AluSq2|SINE|Alu	2216	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
193841	chr6	31530521	31530780	+	0	NA	TTS (NM_001011700).5	TTS (NM_001011700).5	1688	NM_001011700	401250		NM_001011700	ENSG00000204511	MCCD1	-	mitochondrial coiled-coil domain 1	protein-coding
46793	chr11	130132071	130132600	+	0	NA	intron (NM_001328682, intron 10 of 16)	intron (NM_001328682, intron 10 of 16)	-27447	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
216650	chr8	22125101	22125680	+	0	NA	exon (NM_005144, exon 5 of 19)	exon (NM_005144, exon 5 of 19)	5620	NM_005144	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
170268	chr3	184284721	184285000	+	0	NA	intron (NM_014693, intron 8 of 18)	intron (NM_014693, intron 8 of 18)	8838	NM_001100121	9718		NM_001037324	ENSG00000145194	ECE2	EEF1AKMT4	endothelin converting enzyme 2	protein-coding
117746	chr19	29662101	29662300	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-3261	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
62348	chr13	99196201	99196850	+	0	NA	non-coding (NR_036532, exon 2 of 2)	non-coding (NR_036532, exon 2 of 2)	4230	NR_036532	100289373		NR_036531	ENSG00000228889	UBAC2-AS1	-	UBAC2 antisense RNA 1	ncRNA
44382	chr11	102599671	102599830	+	0	NA	intron (NM_004771, intron 6 of 9)	intron (NM_004771, intron 6 of 9)	25582	NM_004771	9313		NM_004771	ENSG00000137674	MMP20	AI2A2|MMP-20	matrix metallopeptidase 20	protein-coding
4919	chr1	23899121	23899400	+	0	NA	intron (NM_001841, intron 1 of 1)	MIRb|SINE|MIR	14102	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
144449	chr20	35511701	35512280	+	0	NA	TTS (NM_001318219)	TTS (NM_001318219)	17662	NR_026933	140873		NM_080828	ENSG00000125975	C20orf173	dJ477O4.4	chromosome 20 open reading frame 173	protein-coding
141714	chr2	241850571	241850930	+	0	NA	3' UTR (NM_005018, exon 5 of 5)	3' UTR (NM_005018, exon 5 of 5)	8144	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
193396	chr6	30411501	30411980	+	0	NA	Intergenic	LTR13_|LTR|ERVK	66584	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
109516	chr19	842751	842850	+	0	NA	intron (NM_002777, intron 1 of 4)	AluSc|SINE|Alu	1801	NM_002777	5657		NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
111464	chr19	3932971	3933630	+	0	NA	promoter-TSS (NM_001375469)	promoter-TSS (NM_001375469)	-171	NM_001375467	27231		NM_014446	ENSG00000077009	NMRK2	ITGB1BP3|MIBP|NRK2	nicotinamide riboside kinase 2	protein-coding
196425	chr6	43449101	43449300	+	0	NA	exon (NM_001198934, exon 20 of 22)	exon (NM_001198934, exon 20 of 22)	6348	NM_023932	65989		NM_023932	ENSG00000171462	DLK2	DLK-2|EGFL9	delta like non-canonical Notch ligand 2	protein-coding
47800	chr12	6577001	6577900	+	0	NA	intron (NM_001273, intron 37 of 39)	intron (NM_001273, intron 37 of 39)	4159	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
125424	chr2	11775321	11776080	+	0	NA	intron (NM_145693, intron 5 of 19)	intron (NM_145693, intron 5 of 19)	8256	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
1331	chr1	2445101	2445300	+	0	NA	Intergenic	Intergenic	-22251	NM_001303012	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
151052	chr21	44694601	44694800	+	0	NA	intron (NM_001272037, intron 1 of 12)	intron (NM_001272037, intron 1 of 12)	-2472	NM_198699	386685		NM_198699	ENSG00000189169	KRTAP10-12	KAP10.12|KRTAP18-12|KRTAP18.12	keratin associated protein 10-12	protein-coding
53178	chr12	59595301	59596200	+	0	NA	promoter-TSS (NM_001270623)	promoter-TSS (NM_001270623)	-279	NM_001270623	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
234480	chrX	17987771	17988130	+	0	NA	intron (NR_133641, intron 2 of 4)	intron (NR_133641, intron 2 of 4)	116694	NR_133641	105373144		NR_133641	ENSG00000225882	LINC01456	-	long intergenic non-protein coding RNA 1456	ncRNA
109831	chr19	1181801	1182000	+	0	NA	Intergenic	Intergenic	-7632	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
158135	chr22	50174321	50175150	+	0	NA	intron (NM_052839, intron 1 of 2)	intron (NM_052839, intron 1 of 2)	4004	NM_052839	56666		NM_052839	ENSG00000073150	PANX2	PX2|hPANX2	pannexin 2	protein-coding
41912	chr11	67280851	67280950	+	0	NA	intron (NM_001619, intron 7 of 20)	intron (NM_001619, intron 7 of 20)	-8403	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
152517	chr22	20961551	20962580	+	0	NA	intron (NR_110537, intron 1 of 1)	intron (NR_110537, intron 1 of 1)	-3107	NM_001018060	150209		NM_144704	ENSG00000183773	AIFM3	AIFL	apoptosis inducing factor mitochondria associated 3	protein-coding
112597	chr19	6718701	6719750	+	0	NA	exon (NM_000064, exon 2 of 41)	exon (NM_000064, exon 2 of 41)	1425	NM_000064	718		NM_000064	ENSG00000125730	C3	AHUS5|ARMD9|ASP|C3a|C3b|CPAMD1|HEL-S-62p	complement C3	protein-coding
154982	chr22	37293871	37294430	+	0	NA	intron (NM_001318024, intron 2 of 12)	intron (NM_001318024, intron 2 of 12)	11642	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
59705	chr13	29594171	29595200	+	0	NA	intron (NM_003045, intron 1 of 12)	intron (NM_003045, intron 1 of 12)	1003	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
216365	chr8	17630521	17630780	+	0	NA	intron (NM_001372073, intron 4 of 5)	(CCCTC)n|Simple_repeat|Simple_repeat	45851	NM_001330470	57509		NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1	microtubule associated scaffold protein 1	protein-coding
120544	chr19	44916501	44917100	+	0	NA	intron (NM_001379687, intron 3 of 3)	AluSx|SINE|Alu	2128	NM_001379687	341		NM_001645	ENSG00000130208	APOC1	Apo-CI|ApoC-I|apo-CIB|apoC-IB	apolipoprotein C1	protein-coding
47461	chr12	3868871	3869030	+	0	NA	intron (NM_001286522, intron 1 of 7)	MLT1D|LTR|ERVL-MaLR	4449	NM_001286522	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
88673	chr16	85679901	85680100	+	0	NA	intron (NM_016095, intron 3 of 4)	intron (NM_016095, intron 3 of 4)	8954	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
148784	chr21	8219001	8219900	+	0	NA	TTS (NR_146144)	TTS (NR_146144)	5562	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
114293	chr19	11700151	11700450	+	0	NA	Intergenic	Intergenic	26302	NR_028594	401898		NM_001013691		ZNF833P	ZNF833	zinc finger protein 833, pseudogene	pseudo
61102	chr13	48446651	48447150	+	0	NA	intron (NM_000321, intron 17 of 26)	L2a|LINE|L2	-2231	NM_005767	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
154213	chr22	31500821	31501280	+	0	NA	intron (NM_001258326, intron 1 of 30)	AluSg4|SINE|Alu	4514	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
163622	chr3	52047221	52047750	+	0	NA	Intergenic	Intergenic	9086	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
9482	chr1	50985171	50985350	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	15015	NM_078626	1031		NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	cyclin dependent kinase inhibitor 2C	protein-coding
6695	chr1	29173051	29173530	+	0	NA	intron (NM_005626, intron 1 of 5)	AluY|SINE|Alu	8610	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
62506	chr13	99439071	99439380	+	0	NA	Intergenic	Intergenic	60081	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
174021	chr4	26609271	26610030	+	0	NA	intron (NM_001292054, intron 1 of 17)	intron (NM_001292054, intron 1 of 17)	25566	NM_018317	55296		NM_018317	ENSG00000109680	TBC1D19	-	TBC1 domain family member 19	protein-coding
53871	chr12	70250701	70251100	+	0	NA	intron (NR_037615, intron 1 of 16)	intron (NR_037615, intron 1 of 16)	7186	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
152760	chr22	21758521	21758780	+	0	NA	Intergenic	Intergenic	-22856	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
142490	chr20	4687001	4687850	+	0	NA	intron (NM_001080123, intron 1 of 1)	intron (NM_001080123, intron 1 of 1)	969	NM_183079	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
199078	chr6	111657221	111657480	+	0	NA	Intergenic	Intergenic	-51076	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
222525	chr8	140570401	140571000	+	0	NA	intron (NM_012154, intron 3 of 18)	MIRb|SINE|MIR	58704	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
140516	chr2	233213101	233213300	+	0	NA	Intergenic	Intergenic	-38371	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
180685	chr5	21478701	21479380	+	0	NA	intron (NR_027026, intron 3 of 4)	MLT1A|LTR|ERVL-MaLR	19560	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
166551	chr3	115418671	115418830	+	0	NA	Intergenic	Intergenic	-204760	NM_002045	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
46438	chr11	128050501	128050700	+	0	NA	Intergenic	MER57D|LTR|ERV1	-158166	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
206114	chr7	27238621	27238880	+	0	NA	Intergenic	Intergenic	-4052	NM_001989	2128		NM_001989	ENSG00000106038	EVX1	EVX-1	even-skipped homeobox 1	protein-coding
140831	chr2	236569351	236570150	+	0	NA	promoter-TSS (NM_020311)	promoter-TSS (NM_020311)	-75	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
191043	chr6	3227631	3228500	+	0	NA	promoter-TSS (NM_178012)	promoter-TSS (NM_178012)	-412	NM_178012	347733		NM_178012	ENSG00000137285	TUBB2B	CDCBM7|PMGYSA|bA506K6.1	tubulin beta 2B class IIb	protein-coding
23557	chr1	229338071	229338650	+	0	NA	intron (NM_145257, intron 2 of 3)	HAL1|LINE|L1	4687	NM_145257	126731		NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
12860	chr1	110087101	110087300	+	0	NA	intron (NR_126382, intron 1 of 3)	intron (NR_126382, intron 1 of 3)	4512	NR_126382	104355139		NR_126382	ENSG00000258673	LINC01397	-	long intergenic non-protein coding RNA 1397	ncRNA
35797	chr11	2196021	2196480	+	0	NA	Intergenic	Intergenic	23187	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
145958	chr20	46204651	46204950	+	0	NA	intron (NM_021248, intron 7 of 11)	intron (NM_021248, intron 7 of 11)	86486	NR_126502	958		NM_001250	ENSG00000101017	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule	protein-coding
133174	chr2	112794051	112794390	+	0	NA	Intergenic	Intergenic	-9727	NM_000575	3552		NM_000575	ENSG00000115008	IL1A	IL-1 alpha|IL-1A|IL1|IL1-ALPHA|IL1F1	interleukin 1 alpha	protein-coding
14585	chr1	145192651	145193950	+	0	NA	intron (NR_156690, intron 1 of 3)	AluY|SINE|Alu	-21551	NR_148945	100996740		NR_148945		LOC100996740	-	uncharacterized LOC100996740	ncRNA
141613	chr2	241668701	241668950	+	0	NA	intron (NM_013325, intron 10 of 12)	intron (NM_013325, intron 10 of 12)	17990	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
173947	chr4	25862401	25863680	+	0	NA	promoter-TSS (NM_015187)	promoter-TSS (NM_015187)	-52	NM_015187	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
121746	chr19	47745271	47746630	+	0	NA	intron (NM_015710, intron 1 of 12)	intron (NM_015710, intron 1 of 12)	404	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
180418	chr5	10376821	10377230	+	0	NA	intron (NM_001270661, intron 1 of 22)	SSU-rRNA_Hsa|rRNA|rRNA	23330	NM_001270661	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
3629	chr1	16379771	16380130	+	0	NA	intron (NR_073500, intron 1 of 1)	AluSx3|SINE|Alu	12708	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
150830	chr21	44020351	44020900	+	0	NA	intron (NM_003274, intron 1 of 22)	AluJr|SINE|Alu	8316	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
117542	chr19	20964951	20965050	+	0	NA	Intergenic	Intergenic	41747	NM_001256173	7639		NM_003429	ENSG00000105750	ZNF85	HPF4|HTF1	zinc finger protein 85	protein-coding
136183	chr2	174494801	174495000	+	0	NA	Intergenic	AluJo|SINE|Alu	-7812	NM_001267051	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
224345	chr9	6827401	6827680	+	0	NA	intron (NR_148677, intron 4 of 21)	intron (NR_148677, intron 4 of 21)	69567	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
148683	chr21	6157571	6157730	+	0	NA	Intergenic	Intergenic	46519	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
128858	chr2	63888401	63889030	+	0	NA	intron (NM_001377529, intron 10 of 11)	MER6A|DNA|TcMar-Tigger	46819	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
85334	chr16	50152121	50154150	+	0	NA	promoter-TSS (NM_001365324)	promoter-TSS (NM_001365324)	-171	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
12401	chr1	101298751	101299450	+	0	NA	Intergenic	Intergenic	-24737	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
12895	chr1	110348821	110349080	+	0	NA	Intergenic	Intergenic	9573	NM_022768	64783		NM_014092	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding
145608	chr20	44643501	44644190	+	0	NA	intron (NR_136160, intron 1 of 10)	L2a|LINE|L2	7854	NM_000022	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
224870	chr9	31323751	31324330	+	0	NA	Intergenic	Intergenic	57450	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
200096	chr6	130189651	130190250	+	0	NA	intron (NM_001258275, intron 7 of 13)	L1MEb|LINE|L1	25935	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
112411	chr19	6200651	6200750	+	0	NA	Intergenic	AluY|SINE|Alu	65033	NM_001289179	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
76927	chr15	78058071	78059200	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	19017	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
152491	chr22	20916821	20918680	+	0	NA	non-coding (NR_156180, exon 1 of 4)	non-coding (NR_156180, exon 1 of 4)	343	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
142761	chr20	10519551	10520000	+	0	NA	intron (NM_001009608, intron 2 of 7)	L1MB7|LINE|L1	84470	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
89537	chr16	89194571	89195200	+	0	NA	TTS (NM_001366322)	TTS (NM_001366322)	5652	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
220529	chr8	100687001	100687280	+	0	NA	Intergenic	AluSz|SINE|Alu	15884	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
206636	chr7	36116771	36117330	+	0	NA	Intergenic	MIR3|SINE|MIR	21740	NR_108089	101928618		NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
39645	chr11	61574901	61577000	+	0	NA	intron (NM_001370211, intron 1 of 7)	intron (NM_001370211, intron 1 of 7)	4922	NM_001252065	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
222847	chr8	142618801	142619700	+	0	NA	Intergenic	Intergenic	-4771	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
106130	chr18	9277251	9277350	+	0	NA	intron (NM_001204056, intron 10 of 11)	AluJr|SINE|Alu	-57473	NM_020648	57045		NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation BMP signaling modulator 1	protein-coding
191349	chr6	7139901	7140100	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	32039	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
182689	chr5	68122551	68123150	+	0	NA	Intergenic	L1PA13|LINE|L1	-67026	NR_105003	102467655		NR_105003	ENSG00000253787	LINC02219	-	long intergenic non-protein coding RNA 2219	ncRNA
199934	chr6	127900071	127900230	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	931	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
198224	chr6	98842351	98843050	+	0	NA	Intergenic	CpG	8126	NM_005604	5454		NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
21667	chr1	206698671	206698830	+	0	NA	intron (NM_032960, intron 1 of 9)	L2a|LINE|L2	13845	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
76674	chr15	75705951	75706250	+	0	NA	intron (NM_001897, intron 1 of 9)	intron (NM_001897, intron 1 of 9)	6748	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
153156	chr22	23779601	23779800	+	0	NA	intron (NM_005940, intron 2 of 7)	intron (NM_005940, intron 2 of 7)	6851	NR_133013	4320		NM_005940	ENSG00000099953	MMP11	SL-3|ST3|STMY3	matrix metallopeptidase 11	protein-coding
225449	chr9	35108171	35108550	+	0	NA	intron (NR_134455, intron 2 of 9)	intron (NR_134455, intron 2 of 9)	3092	NM_001317991	80256		NM_025182	ENSG00000005238	ATOSB	FAM214B|KIAA1539	atos homolog B	protein-coding
164145	chr3	56758451	56759650	+	0	NA	intron (NM_001289698, intron 3 of 10)	intron (NM_001289698, intron 3 of 10)	16667	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
34248	chr10	130360221	130360530	+	0	NA	Intergenic	Intergenic	223966	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
182560	chr5	65924651	65926200	+	0	NA	Intergenic	CpG	-1129	NM_001006600	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
68612	chr14	89620121	89620480	+	0	NA	Intergenic	Intergenic	-1135	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
200068	chr6	130037051	130037700	+	0	NA	intron (NM_001007102, intron 2 of 21)	intron (NM_001007102, intron 2 of 21)	17731	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
76715	chr15	75925501	75925700	+	0	NA	intron (NM_147188, intron 5 of 6)	intron (NM_147188, intron 5 of 6)	21722	NR_037623	26263		NM_012170	ENSG00000167196	FBXO22	FBX22|FISTC1	F-box protein 22	protein-coding
210894	chr7	101175351	101175450	+	0	NA	intron (NM_198571, intron 1 of 3)	FLAM_C|SINE|Alu	3836	NM_001369695	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
42751	chr11	72718901	72719730	+	0	NA	intron (NM_001040118, intron 3 of 34)	MER94|DNA|hAT-Blackjack	3025	NR_161388	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
56185	chr12	111434521	111436250	+	0	NA	intron (NM_001291424, intron 1 of 6)	AluSz|SINE|Alu	523	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
217088	chr8	24229371	24229600	+	0	NA	Intergenic	Intergenic	-64555	NR_130709	10863		NM_014265	ENSG00000042980	ADAM28	ADAM 28|MDC-L|MDCL|eMDC II|eMDCII	ADAM metallopeptidase domain 28	protein-coding
133402	chr2	118842001	118842430	+	0	NA	TTS (NM_001426)	TTS (NM_001426)	5433	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
176662	chr4	100079251	100079750	+	0	NA	Intergenic	Intergenic	-110533	NR_125924	101929353		NR_125924	ENSG00000249710	DDIT4L-AS1	-	DDIT4L antisense RNA 1	ncRNA
40844	chr11	65038401	65039630	+	0	NA	intron (NM_013306, intron 7 of 7)	intron (NM_013306, intron 7 of 7)	-1918	NR_160028	29901		NM_013299	ENSG00000168061	SAC3D1	HSU79266|SHD1	SAC3 domain containing 1	protein-coding
119306	chr19	39841901	39842780	+	0	NA	intron (NM_001436, intron 1 of 8)	AluY|SINE|Alu	4039	NM_001436	2091		NM_001436	ENSG00000105202	FBL	FIB|FLRN|Nop1|RNU3IP1	fibrillarin	protein-coding
27110	chr10	27564021	27564650	+	0	NA	Intergenic	L1MC1|LINE|L1	60031	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
167843	chr3	133928601	133928800	+	0	NA	non-coding (NR_161373, exon 1 of 1)	non-coding (NR_161373, exon 1 of 1)	1112	NR_161373	80111		NM_025041	ENSG00000288547	C3orf36	-	chromosome 3 putative open reading frame 36	ncRNA
85653	chr16	56194121	56194780	+	0	NA	promoter-TSS (NR_026889)	promoter-TSS (NR_026889)	75	NR_026889	26077		NR_026889	ENSG00000261439	GNAO1-AS1	DKFZP434H168	GNAO1 antisense RNA 1	ncRNA
30826	chr10	86367501	86368330	+	0	NA	Intergenic	L2b|LINE|L2	-1120	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
193368	chr6	30329251	30330080	+	0	NA	exon (NM_021253, exon 3 of 9).2	exon (NM_021253, exon 3 of 9).2	354	NM_001199119	202658		NM_001199119	ENSG00000248167	TRIM39-RPP21	TRIM39R	TRIM39-RPP21 readthrough	protein-coding
71070	chr14	104830421	104830980	+	0	NA	Intergenic	AluSg|SINE|Alu	9499	NR_024396	196872		NM_152646	ENSG00000258701	VESTAR	LINC00638	VEGFC mRNA stability associated lncRNA	ncRNA
19413	chr1	174174001	174174200	+	0	NA	intron (NM_001366447, intron 1 of 20)	intron (NM_001366447, intron 1 of 20)	14580	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
2685	chr1	10591251	10591550	+	0	NA	intron (NM_004565, intron 3 of 8)	intron (NM_004565, intron 3 of 8)	116450	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
48867	chr12	12441271	12442780	+	0	NA	intron (NM_058169, intron 3 of 3)	intron (NM_058169, intron 3 of 3)	84947	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
78566	chr15	93020051	93020830	+	0	NA	intron (NM_001271, intron 38 of 38)	intron (NM_001271, intron 38 of 38)	52716	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
54443	chr12	91787051	91787550	+	0	NA	Intergenic	Intergenic	354413	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
227892	chr9	93956621	93956880	+	0	NA	non-coding (NR_144455, exon 1 of 2)	non-coding (NR_144455, exon 1 of 2)	916	NR_144455	101928040		NR_144455	ENSG00000235601	BARX1-DT	BARX1-AS1	BARX1 divergent transcript	ncRNA
213428	chr7	138257571	138257800	+	0	NA	Intergenic	MER61E|LTR|ERV1	133927	NR_039678	100616226		NR_039678	ENSG00000284028	MIR4468	-	microRNA 4468	ncRNA
204433	chr7	3154501	3155300	+	0	NA	intron (NR_126024, intron 2 of 3)	L1MC5|LINE|L1	3673	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
21378	chr1	205203921	205204180	+	0	NA	intron (NM_015375, intron 1 of 12)	intron (NM_015375, intron 1 of 12)	7652	NM_199462	25778		NM_015375	ENSG00000133059	DSTYK	CAKUT1|DustyPK|HDCMD38P|RHDNS1|RIP5|RIPK5|SPG23	dual serine/threonine and tyrosine protein kinase	protein-coding
60605	chr13	42051571	42051730	+	0	NA	intron (NM_001204504, intron 2 of 29)	AluSp|SINE|Alu	3002	NM_178009	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
205035	chr7	6529501	6530130	+	0	NA	intron (NM_001145118, intron 2 of 21)	intron (NM_001145118, intron 2 of 21)	21621	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
123799	chr19	55157851	55158150	+	0	NA	promoter-TSS (NM_000363)	promoter-TSS (NM_000363)	-268	NM_000363	7137		NM_000363	ENSG00000129991	TNNI3	CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI	troponin I3, cardiac type	protein-coding
187336	chr5	141652801	141653000	+	0	NA	TTS (NM_022481)	TTS (NM_022481)	-1482	NM_033449	89848		NM_033449	ENSG00000197948	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
182717	chr5	68249871	68250300	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	34329	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
94701	chr17	30692251	30692930	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	-17018	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
99764	chr17	51048071	51048230	+	0	NA	intron (NM_001130527, intron 3 of 29)	intron (NM_001130527, intron 3 of 29)	-1272	NM_001251971	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
178740	chr4	153113271	153114080	+	0	NA	Intergenic	L2|LINE|L2	-38488	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
163400	chr3	50525851	50526450	+	0	NA	Intergenic	Intergenic	-21906	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
17718	chr1	158926401	158926880	+	0	NA	Intergenic	LTR9A1|LTR|ERV1	-4912	NM_152501	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
170323	chr3	184360121	184360580	+	0	NA	intron (NM_004366, intron 1 of 23)	intron (NM_004366, intron 1 of 23)	1255	NM_001171089	1181		NM_004366	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|FHA2|FHII|HALD2|LKPAT|clC-2	chloride voltage-gated channel 2	protein-coding
65624	chr14	52286721	52287330	+	0	NA	Intergenic	Intergenic	19327	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
83780	chr16	28742471	28742830	+	0	NA	Intergenic	AluSc8|SINE|Alu	-9785	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
167221	chr3	128456901	128457350	+	0	NA	Intergenic	(TCTGTC)n|Simple_repeat|Simple_repeat	-6469	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
170247	chr3	184232701	184232900	+	0	NA	promoter-TSS (NM_001320373)	promoter-TSS (NM_001320373)	-616	NM_001320373	90113		NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
12529	chr1	108558121	108558380	+	0	NA	Intergenic	L2b|LINE|L2	-1850	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
172025	chr4	991451	992400	+	0	NA	intron (NM_134425, intron 1 of 2)	intron (NM_134425, intron 1 of 2)	1479	NM_134425	10861		NM_022042	ENSG00000145217	SLC26A1	CAON|CAON1|EDM4|HYSULF|SAT-1|SAT1	solute carrier family 26 member 1	protein-coding
82574	chr16	18782401	18782600	+	0	NA	3' UTR (NM_001030009, exon 5 of 5)	3' UTR (NM_001030009, exon 5 of 5)	7834	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
215289	chr7	157273301	157274450	+	0	NA	Intergenic	Intergenic	-63129	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
121779	chr19	47776221	47776750	+	0	NA	Intergenic	AluSx|SINE|Alu	-2218	NM_003009	6415		NM_003009	ENSG00000178980	SELENOW	SEPW1|selW	selenoprotein W	protein-coding
239033	chrY	4999971	5000350	+	0	NA	promoter-TSS (NM_001278619)	promoter-TSS (NM_001278619)	-136	NM_001278619	83259		NM_032971	ENSG00000099715	PCDH11Y	PCDH-PC|PCDH22|PCDHX|PCDHY	protocadherin 11 Y-linked	protein-coding
27451	chr10	31927451	31929670	+	0	NA	intron (NM_018287, intron 1 of 19)	CpG	271	NM_001270698	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
200172	chr6	130675201	130675400	+	0	NA	Intergenic	L2b|LINE|L2	-152106	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
187517	chr5	142421621	142421880	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	96457	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
231022	chr9	129582671	129583330	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-25884	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
176916	chr4	102810271	102810650	+	0	NA	intron (NM_181893, intron 1 of 6)	AluY|SINE|Alu	15400	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
195159	chr6	35735921	35736650	+	0	NA	promoter-TSS (NM_145028)	promoter-TSS (NM_145028)	662	NR_027117	285847		NR_027117		LOC285847	-	uncharacterized LOC285847	ncRNA
34951	chr11	456551	458200	+	0	NA	intron (NR_138046, intron 1 of 12)	intron (NR_138046, intron 1 of 12)	7096	NM_001329545	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
25877	chr10	11256771	11257130	+	0	NA	intron (NM_001326330, intron 4 of 12)	intron (NM_001326330, intron 4 of 12)	87724	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
64562	chr14	24632601	24632950	+	0	NA	intron (NM_001346011, intron 2 of 4)	intron (NM_001346011, intron 2 of 4)	1415	NM_004131	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
148298	chr20	63723751	63724050	+	0	NA	intron (NM_181485, intron 2 of 6)	AluJb|SINE|Alu	-11801	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
68957	chr14	91409521	91410380	+	0	NA	intron (NM_001080414, intron 2 of 29)	intron (NM_001080414, intron 2 of 29)	7870	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
128677	chr2	61476121	61476380	+	0	NA	Intergenic	Intergenic	-5163	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
235507	chrX	47185921	47186330	+	0	NA	exon (NM_001204467, exon 22 of 24)	exon (NM_001204467, exon 22 of 24)	-4722	NM_153280	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
105509	chr17	83104901	83105780	+	0	NA	Intergenic	CpG	24194	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
187491	chr5	142222451	142222880	+	0	NA	Intergenic	Intergenic	95657	NR_131221	100642175		NR_131221		SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
68435	chr14	81452771	81453400	+	0	NA	Intergenic	MIRc|SINE|MIR	-2928	NR_109999	100506700		NR_109999		LINC02308	-	long intergenic non-protein coding RNA 2308	ncRNA
114415	chr19	12664321	12664600	+	0	NA	intron (NM_001173498, intron 4 of 23)	intron (NM_001173498, intron 4 of 23)	2282	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
154495	chr22	35659221	35659530	+	0	NA	exon (NM_030641, exon 3 of 3)	exon (NM_030641, exon 3 of 3)	10929	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
155093	chr22	37569401	37569830	+	0	NA	TTS (NM_006498)	TTS (NM_006498)	9135	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
144765	chr20	36617501	36618230	+	0	NA	intron (NM_175077, intron 5 of 7)	intron (NM_175077, intron 5 of 7)	12086	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
115013	chr19	14071651	14072700	+	0	NA	promoter-TSS (NR_111941)	promoter-TSS (NR_111941)	-611	NM_001291291	113230		NM_001291291	ENSG00000141854	MISP3	-	MISP family member 3	protein-coding
51559	chr12	52566051	52567750	+	0	NA	3' UTR (NM_175053, exon 9 of 9)	3' UTR (NM_175053, exon 9 of 9)	6943	NM_175053	121391		NM_175053	ENSG00000170484	KRT74	ADWH|ECTD7|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4	keratin 74	protein-coding
55551	chr12	105862071	105862230	+	0	NA	Intergenic	Intergenic	155376	NR_110110	101929110		NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility 18	ncRNA
208342	chr7	66491601	66491950	+	0	NA	Intergenic	Intergenic	-1857	NR_134573	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
222341	chr8	133540301	133540630	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	31422	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
58620	chr12	132495751	132495850	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	5649	NM_001382740	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
43567	chr11	83044871	83045480	+	0	NA	intron (NM_014488, intron 1 of 5)	intron (NM_014488, intron 1 of 5)	-3577	NR_033347	100379250		NR_033347	ENSG00000207221	SNORA70E	U70E	small nucleolar RNA, H/ACA box 70E	snoRNA
74616	chr15	60647671	60647830	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	-20220	NM_134260	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
168526	chr3	143972901	143974380	+	0	NA	intron (NM_001134470, intron 1 of 2)	intron (NM_001134470, intron 1 of 2)	559	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
73866	chr15	50318451	50319250	+	0	NA	intron (NM_016654, intron 1 of 8)	HAL1|LINE|L1	-35324	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
38297	chr11	43575501	43576000	+	0	NA	Intergenic	CpG	-5644	NR_029697	406918		NR_029697	ENSG00000199077	MIR129-2	MIR-129b|MIRN129-2|mir-129-2	microRNA 129-2	ncRNA
42271	chr11	68217351	68218250	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4152	NM_001300909	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
64291	chr14	23539201	23539950	+	0	NA	intron (NM_033400, intron 1 of 9)	intron (NM_033400, intron 1 of 9)	12190	NM_033400	85446		NM_033400	ENSG00000136367	ZFHX2	MARSIS|ZFH-5|ZFH5|ZNF409	zinc finger homeobox 2	protein-coding
53003	chr12	57514951	57515450	+	0	NA	exon (NM_004990, exon 18 of 21)	exon (NM_004990, exon 18 of 21)	2512	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
224521	chr9	19126871	19129130	+	0	NA	promoter-TSS (NM_001122)	promoter-TSS (NM_001122)	-394	NR_038064	123		NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
36353	chr11	3918251	3918550	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluJb|SINE|Alu	62338	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
111008	chr19	3048921	3049180	+	0	NA	intron (NR_031672, intron 2 of 2).3	AluJr|SINE|Alu	-1415	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
7892	chr1	36481921	36482330	+	0	NA	intron (NM_172313, intron 1 of 17)	intron (NM_172313, intron 1 of 17)	788	NM_172313	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
30051	chr10	73817121	73817380	+	0	NA	intron (NM_172173, intron 17 of 19)	intron (NM_172173, intron 17 of 19)	-5430	NR_160744	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
32699	chr10	104005201	104005600	+	0	NA	intron (NM_014720, intron 9 of 18)	intron (NM_014720, intron 9 of 18)	38260	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
187760	chr5	144191271	144191430	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	-14041	NM_001370487	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
131929	chr2	98937201	98937400	+	0	NA	Intergenic	CpG-16340	-1075	NM_207362	343990		NM_207362	ENSG00000196872	CRACDL	C2orf55|KIAA1211L	CRACD like	protein-coding
114688	chr19	13110271	13110830	+	0	NA	intron (NM_001136035, intron 7 of 16)	intron (NM_001136035, intron 7 of 16)	6107	NM_017722	55621		NM_017722	ENSG00000104907	TRMT1	MRT68|TRM1	tRNA methyltransferase 1	protein-coding
201927	chr6	151400751	151401550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9591	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
216607	chr8	22056471	22057030	+	0	NA	promoter-TSS (NM_001323401)	promoter-TSS (NM_001323401)	-64	NM_001323395	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
159487	chr3	14175401	14176180	+	0	NA	intron (NM_001354729, intron 1 of 15)	intron (NM_001354729, intron 1 of 15)	2811	NR_148951	7508		NM_004628	ENSG00000154767	XPC	RAD4|XP3|XPCC|p125	XPC complex subunit, DNA damage recognition and repair factor	protein-coding
140337	chr2	232550051	232552300	+	0	NA	promoter-TSS (NR_049797)	promoter-TSS (NR_049797)	369	NM_001330202	9470		NM_004846	ENSG00000135930	EIF4E2	4E-LP|4EHP|EIF4EL3|IF4e|h4EHP	eukaryotic translation initiation factor 4E family member 2	protein-coding
97975	chr17	45256001	45257000	+	0	NA	intron (NM_152343, intron 2 of 4)	intron (NM_152343, intron 2 of 4)	-5580	NR_024435	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
162141	chr3	46957021	46957280	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	19351	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
233126	chr9	137145671	137145830	+	0	NA	exon (NM_021569, exon 3 of 19)	exon (NM_021569, exon 3 of 19)	6596	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
19849	chr1	182893771	182893930	+	0	NA	Intergenic	L1MA3|LINE|L1	-54259	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
90143	chr17	132271	132650	+	0	NA	Intergenic	MER57C2|LTR|ERV1	-5109	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
155399	chr22	38336051	38336850	+	0	NA	intron (NM_001289912, intron 5 of 14)	CpG	-18366	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
115319	chr19	15091671	15092500	+	0	NA	Intergenic	Intergenic	5019	NM_001004713	126370		NM_001004713	ENSG00000094661	OR1I1	OR19-20|OR1I1P|OR1I1Q	olfactory receptor family 1 subfamily I member 1	protein-coding
133620	chr2	126662651	126663380	+	0	NA	intron (NM_016815, intron 1 of 2)	intron (NM_016815, intron 1 of 2)	6857	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
4713	chr1	23178771	23179400	+	0	NA	Intergenic	Intergenic	-10227	NM_001142546	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
53669	chr12	68422071	68422880	+	0	NA	Intergenic	Intergenic	29009	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
54819	chr12	94711051	94711150	+	0	NA	Intergenic	Intergenic	-60543	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
41657	chr11	66555671	66556030	+	0	NA	intron (NR_047663, intron 7 of 20)	intron (NR_047663, intron 7 of 20)	8947	NM_001104	89		NM_001104	ENSG00000248746	ACTN3	ACTN3D	actinin alpha 3	protein-coding
157560	chr22	45867201	45867400	+	0	NA	Intergenic	CpG	106776	NR_039919	100616253		NR_039919	ENSG00000264160	MIR4762	-	microRNA 4762	ncRNA
102486	chr17	75743971	75744330	+	0	NA	intron (NM_001005619, intron 25 of 38)	AluSp|SINE|Alu	19454	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
227725	chr9	93052021	93052300	+	0	NA	Intergenic	Intergenic	-6528	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
37205	chr11	14328021	14328280	+	0	NA	intron (NM_001177314, intron 1 of 5)	AluSp|SINE|Alu	30335	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
126980	chr2	36387351	36387650	+	0	NA	intron (NM_016441, intron 1 of 16)	L4_A_Mam|LINE|RTE-X	31722	NM_016441	51232		NM_016441	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1	protein-coding
193431	chr6	30474351	30475830	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-14419	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
208193	chr7	64951151	64951480	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	39721	NM_015852	51351		NM_015852	ENSG00000152926	ZNF117	H-plk|HPF9	zinc finger protein 117	protein-coding
216957	chr8	22998121	22998400	+	0	NA	intron (NM_001374791, intron 1 of 9)	Tigger19a|DNA|TcMar-Tigger	-1288	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
147561	chr20	60138371	60138830	+	0	NA	non-coding (NR_046099, exon 1 of 5)	non-coding (NR_046099, exon 1 of 5)	108	NR_046099	284757		NM_001004305	ENSG00000228340	MIR646HG	-	MIR646 host gene	ncRNA
112742	chr19	7361971	7362130	+	0	NA	intron (NM_001367823, intron 1 of 28)	(GGAGAA)n|Simple_repeat|Simple_repeat	13113	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
189945	chr5	177401221	177401730	+	0	NA	promoter-TSS (NM_001029886)	promoter-TSS (NM_001029886)	-814	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
131194	chr2	95028251	95028350	+	0	NA	intron (NM_022440, intron 1 of 1)	AluSx|SINE|Alu	2592	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
31030	chr10	88879671	88881400	+	0	NA	5' UTR (NM_020799, exon 1 of 11)	5' UTR (NM_020799, exon 1 of 11)	290	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
58571	chr12	132430221	132431100	+	0	NA	Intergenic	AluY|SINE|Alu	-59491	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
157689	chr22	46355071	46355980	+	0	NA	exon (NM_001282784, exon 8 of 9)	exon (NM_001282784, exon 8 of 9)	19811	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
209201	chr7	75422371	75423130	+	0	NA	exon (NM_001099415, exon 13 of 15)	exon (NM_001099415, exon 13 of 15)	12428	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
144839	chr20	36865471	36866000	+	0	NA	Intergenic	L2b|LINE|L2	-2197	NM_080627	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
235886	chrX	52160101	52160500	+	0	NA	Intergenic	L1PA4|LINE|L1	-24523	NM_001242362	81557		NM_030801	ENSG00000187243	MAGED4B	-	MAGE family member D4B	protein-coding
22761	chr1	224389121	224389580	+	0	NA	3' UTR (NM_025160, exon 14 of 14)	3' UTR (NM_025160, exon 14 of 14)	8961	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
71463	chr14	105864151	105864250	+	0	NA	Intergenic	Intergenic	-4647	NR_130466	100616422		NR_130466	ENSG00000264781	MIR4537	-	microRNA 4537	ncRNA
200404	chr6	134456251	134456550	+	0	NA	intron (NR_125852, intron 2 of 4)	MIRb|SINE|MIR	18010	NR_038219	154092		NR_038216	ENSG00000236700	LINC01010	-	long intergenic non-protein coding RNA 1010	ncRNA
57193	chr12	121453921	121454530	+	0	NA	intron (NM_001005366, intron 12 of 22)	L2b|LINE|L2	-9873	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
109337	chr19	605371	606330	+	0	NA	intron (NM_001194, intron 3 of 7)	intron (NM_001194, intron 3 of 7)	15969	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
117797	chr19	29848101	29848500	+	0	NA	Intergenic	L1M5|LINE|L1	36309	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
239339	chrY	19232171	19232800	+	0	NA	Intergenic	L1P1|LINE|L1	-154938	NR_001543	83869		NM_031932	ENSG00000176728	TTTY14	CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14	testis expressed transcript, Y-linked 14	ncRNA
157717	chr22	46469921	46470130	+	0	NA	intron (NM_001378328, intron 1 of 34)	intron (NM_001378328, intron 1 of 34)	67595	NM_014246	9620		NM_014246	ENSG00000075275	CELSR1	ADGRC1|CDHF9|FMI2|HFMI2|LMPHM9|ME2	cadherin EGF LAG seven-pass G-type receptor 1	protein-coding
95138	chr17	35051251	35052830	+	0	NA	intron (NR_037713, intron 1 of 6)	MIR3|SINE|MIR	11667	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
65977	chr14	56579351	56580530	+	0	NA	exon (NM_017799, exon 1 of 16)	exon (NM_017799, exon 1 of 16)	142	NM_017799	54916		NM_017799	ENSG00000070269	TMEM260	C14orf101|SHDRA	transmembrane protein 260	protein-coding
80716	chr16	3089101	3089300	+	0	NA	exon (NM_001282415, exon 5 of 5)	exon (NM_001282415, exon 5 of 5)	10094	NM_001282415	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
161459	chr3	42213201	42213700	+	0	NA	TTS (NM_001265608)	TTS (NM_001265608)	50497	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
225476	chr9	35609451	35609550	+	0	NA	TTS (NM_001782)	TTS (NM_001782)	1406	NR_039813	100616214		NR_039813	ENSG00000263892	MIR4667	mir-4667	microRNA 4667	ncRNA
199162	chr6	111740551	111741100	+	0	NA	intron (NM_002037, intron 3 of 13)	L2a|LINE|L2	18306	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
108943	chr18	79491851	79492600	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-87057	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
170029	chr3	181699621	181699880	+	0	NA	non-coding (NR_004053, exon 3 of 5)	non-coding (NR_004053, exon 3 of 5)	-12175	NM_003106	6657		NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box transcription factor 2	protein-coding
81018	chr16	4252551	4252650	+	0	NA	intron (NR_039999, intron 1 of 2)	AluSx|SINE|Alu	1189	NR_039999	100507501		NR_039999		LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA
36634	chr11	7537721	7538530	+	0	NA	intron (NM_001351855, intron 1 of 24)	intron (NM_001351855, intron 1 of 24)	24126	NM_001351856	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
231944	chr9	133130721	133131450	+	0	NA	promoter-TSS (NM_001271774)	promoter-TSS (NM_001271774)	72	NM_001271774	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
152336	chr22	20422421	20423400	+	0	NA	Intergenic	(GAGGCGG)n|Simple_repeat|Simple_repeat	14915	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
922	chr1	1707701	1708580	+	0	NA	intron (NR_132739, intron 10 of 19)	intron (NR_132739, intron 10 of 19)	8201	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
4686	chr1	22930371	22930530	+	0	NA	Intergenic	Intergenic	42416	NM_001289974	646262		NM_001289974	ENSG00000215906	LACTBL1	-	lactamase beta like 1	protein-coding
28857	chr10	62634621	62635180	+	0	NA	Intergenic	MIRb|SINE|MIR	-169820	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
91839	chr17	7202801	7203350	+	0	NA	intron (NR_135527, intron 9 of 20)	intron (NR_135527, intron 9 of 20)	2112	NM_001321077	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
95831	chr17	38803871	38804030	+	0	NA	intron (NM_017748, intron 8 of 9)	AluJo|SINE|Alu	-4045	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
119581	chr19	40688901	40689900	+	0	NA	intron (NM_004756, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	764	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
209080	chr7	74800671	74801230	+	0	NA	intron (NM_173537, intron 15 of 15)	AluSz6|SINE|Alu	26988	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
5308	chr1	25220571	25220730	+	0	NA	Intergenic	AluSx1|SINE|Alu	11852	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
101242	chr17	66246021	66247350	+	0	NA	Intergenic	L3|LINE|CR1	-17270	NM_000042	350		NM_000042	ENSG00000091583	APOH	B2G1|B2GP1|BG	apolipoprotein H	protein-coding
186108	chr5	134131021	134131690	+	0	NA	intron (NM_001366502, intron 1 of 7)	intron (NM_001366502, intron 1 of 7)	7737	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
229628	chr9	124022621	124022950	+	0	NA	intron (NM_004789, intron 4 of 4)	CpG	11017	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
148266	chr20	63682701	63682900	+	0	NA	intron (NM_032957, intron 14 of 34)	intron (NM_032957, intron 14 of 34)	-13852	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
191376	chr6	7350751	7350850	+	0	NA	intron (NM_001170692, intron 11 of 13)	L1PB1|LINE|L1	-37601	NM_001292008	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
237975	chrX	134171751	134172300	+	0	NA	Intergenic	CpG	-1747	NR_029523	406899		NR_029523	ENSG00000284157	MIR106A	MIRN106A|mir-106|mir-106a	microRNA 106a	ncRNA
75986	chr15	70535121	70536380	+	0	NA	Intergenic	Intergenic	-29822	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
236260	chrX	65873421	65873830	+	0	NA	Intergenic	Intergenic	-145245	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
18477	chr1	161621001	161622550	+	0	NA	Intergenic	Intergenic	9272	NM_001271036	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
129259	chr2	68381271	68381630	+	0	NA	intron (NM_002664, intron 3 of 8)	intron (NM_002664, intron 3 of 8)	16168	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
80176	chr16	2121301	2122450	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-11244	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
176812	chr4	102537321	102537800	+	0	NA	intron (NM_001382625, intron 5 of 24)	MamRTE1|LINE|RTE-BovB	-35074	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
111197	chr19	3459401	3460050	+	0	NA	intron (NM_205843, intron 10 of 10)	intron (NM_205843, intron 10 of 10)	20800	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
151117	chr21	44882571	44883830	+	0	NA	Intergenic	AluSc5|SINE|Alu	-9297	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
4620	chr1	22102821	22103480	+	0	NA	Intergenic	Intergenic	39947	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
166449	chr3	114056051	114057230	+	0	NA	promoter-TSS (NM_001256836)	promoter-TSS (NM_001256836)	-27	NM_001353767	57577		NM_020817	ENSG00000163617	CCDC191	KIAA1407	coiled-coil domain containing 191	protein-coding
135383	chr2	160484871	160485880	+	0	NA	intron (NM_016836, intron 1 of 13)	Tigger16b|DNA|TcMar-Tigger	8432	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
236954	chrX	101078871	101079030	+	0	NA	promoter-TSS (NM_021637)	promoter-TSS (NM_021637)	71	NM_021637	59353		NM_021637	ENSG00000126950	TMEM35A	NACHO|TMEM35|TUF-1	transmembrane protein 35A	protein-coding
36135	chr11	3124021	3124280	+	0	NA	intron (NM_145638, intron 3 of 20)	MIR|SINE|MIR	41160	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
210138	chr7	98221821	98222480	+	0	NA	intron (NM_015395, intron 22 of 25)	intron (NM_015395, intron 22 of 25)	10711	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
138308	chr2	203738271	203738650	+	0	NA	3' UTR (NM_001243077, exon 4 of 4)	3' UTR (NM_001243077, exon 4 of 4)	31821	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
209493	chr7	76638051	76638150	+	0	NA	Intergenic	AluSp|SINE|Alu	-10797	NM_152992	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
123508	chr19	54213221	54213500	+	0	NA	Intergenic	L1MB5|LINE|L1	9647	NR_135494	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
116060	chr19	17223451	17223750	+	0	NA	Intergenic	AluJo|SINE|Alu	-2626	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
206561	chr7	35654301	35654900	+	0	NA	intron (NM_022373, intron 5 of 8)	L1MA4A|LINE|L1	40535	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
137693	chr2	197487371	197487730	+	0	NA	promoter-TSS (NR_132787)	promoter-TSS (NR_132787)	-647	NR_132788	106635540		NR_132788		SNORA105B	-	small nucleolar RNA, H/ACA box 105B	snoRNA
97099	chr17	42456401	42457480	+	0	NA	Intergenic	Intergenic	-1938	NM_001378547	535		NM_005177	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|DEE104|NEDEBA|Stv1|VPP1|Vph1|a1	ATPase H+ transporting V0 subunit a1	protein-coding
55976	chr12	110122271	110122780	+	0	NA	Intergenic	Intergenic	-1832	NM_031473	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
45707	chr11	119081721	119081980	+	0	NA	non-coding (NR_165448, exon 14 of 14)	non-coding (NR_165448, exon 14 of 14)	-3027	NM_001258209	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
106252	chr18	12227751	12228130	+	0	NA	Intergenic	Intergenic	-26421	NM_001318383	1149		NM_001279	ENSG00000176194	CIDEA	CIDE-A	cell death inducing DFFA like effector a	protein-coding
54949	chr12	96239401	96239830	+	0	NA	intron (NM_005230, intron 2 of 4)	intron (NM_005230, intron 2 of 4)	-15883	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
30763	chr10	84325971	84326130	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-2539	NM_001284241	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
205314	chr7	12222801	12223600	+	0	NA	intron (NM_001134232, intron 3 of 7)	intron (NM_001134232, intron 3 of 7)	11906	NM_001134232	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
7307	chr1	32499851	32499950	+	0	NA	Intergenic	AluY|SINE|Alu	34828	NM_001145720	728116		NM_001145720	ENSG00000273274	ZBTB8B	ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
19919	chr1	184384751	184385230	+	0	NA	Intergenic	Intergenic	-2039	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
198575	chr6	107330101	107330400	+	0	NA	intron (NM_020381, intron 2 of 7)	MLT1J1|LTR|ERVL-MaLR	129314	NM_020381	57107		NM_020381	ENSG00000164494	PDSS2	C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1	decaprenyl diphosphate synthase subunit 2	protein-coding
158187	chr22	50232551	50233050	+	0	NA	intron (NM_020461, intron 3 of 24)	intron (NM_020461, intron 3 of 24)	12223	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
236604	chrX	74233051	74233150	+	0	NA	intron (NR_028379, intron 5 of 6)	intron (NR_028379, intron 5 of 6)	-14482	NR_030620	100126317		NR_030620	ENSG00000212027	MIR374B	MIRN374B|mir-374b	microRNA 374b	ncRNA
34576	chr10	133235971	133236150	+	0	NA	Intergenic	CpG	-1795	NM_014468	27287		NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
215165	chr7	155652921	155653180	+	0	NA	intron (NM_053043, intron 1 of 17)	L1MB3|LINE|L1	8389	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
218322	chr8	42753551	42754050	+	0	NA	intron (NM_001199279, intron 4 of 4)	intron (NM_001199279, intron 4 of 4)	14986	NM_004198	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
35549	chr11	1619151	1619830	+	0	NA	Intergenic	Intergenic	2648	NM_001347674	387267		NM_001012709	ENSG00000241598	KRTAP5-4	KRTAP5.4	keratin associated protein 5-4	protein-coding
81226	chr16	4533721	4534930	+	0	NA	intron (NM_001199055, intron 1 of 5)	intron (NM_001199055, intron 1 of 5)	4104	NM_001199054	29965		NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
31541	chr10	96920151	96920250	+	0	NA	intron (NM_032440, intron 4 of 7)	L1MB2|LINE|L1	87255	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
221125	chr8	118113371	118113930	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-1824	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
29994	chr10	73757851	73758150	+	0	NA	intron (NM_198597, intron 3 of 22)	AluSg|SINE|Alu	13628	NM_198597	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
98428	chr17	46815751	46816050	+	0	NA	intron (NM_030753, intron 1 of 4)	intron (NM_030753, intron 1 of 4)	2792	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
37865	chr11	33778871	33779030	+	0	NA	Intergenic	Intergenic	4251	NR_120550	101928440		NR_120550	ENSG00000254508	FBXO3-DT	FBXO3-AS1	FBXO3 divergent transcript	ncRNA
72349	chr15	31336951	31337050	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	10165	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
236703	chrX	77787901	77788580	+	0	NA	Intergenic	MER51A|LTR|ERV1	-2024	NM_138270	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
239500	chrY	56759521	56759850	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-194570	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
78581	chr15	93032271	93032800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	40621	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
211947	chr7	112477071	112477880	+	0	NA	TTS (NM_001197080)	TTS (NM_001197080)	-3378	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
194994	chr6	35389701	35390100	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	47342	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
50049	chr12	44505771	44506130	+	0	NA	Intergenic	Intergenic	369711	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
198462	chr6	106164101	106165180	+	0	NA	Intergenic	Intergenic	65699	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
180637	chr5	16935321	16935580	+	0	NA	intron (NM_012334, intron 1 of 40)	CpG	838	NM_012334	4651		NM_012334	ENSG00000145555	MYO10	MyoX	myosin X	protein-coding
37890	chr11	34053101	34054450	+	0	NA	intron (NM_203364, intron 2 of 17)	intron (NM_203364, intron 2 of 17)	2044	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
124040	chr19	55503121	55504330	+	0	NA	intron (NM_001144950, intron 12 of 13)	CpG	15289	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
137794	chr2	199910621	199912300	+	0	NA	exon (NM_153689, exon 1 of 2)	exon (NM_153689, exon 1 of 2)	167	NM_153689	205327		NM_153689	ENSG00000178074	C2orf69	COXPD53	chromosome 2 open reading frame 69	protein-coding
110409	chr19	1955401	1955800	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	-1051	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
42470	chr11	69704471	69704830	+	0	NA	promoter-TSS (NM_005117)	promoter-TSS (NM_005117)	-628	NM_005117	9965		NM_005117	ENSG00000162344	FGF19	-	fibroblast growth factor 19	protein-coding
64490	chr14	24315371	24316100	+	0	NA	exon (NM_001143919, exon 2 of 2).2	exon (NM_001143919, exon 2 of 2).2	2628	NM_181657	1241		NM_181657	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
122077	chr19	48723401	48723600	+	0	NA	intron (NM_017805, intron 10 of 11)	AluSx|SINE|Alu	-3775	NM_001130915	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
235213	chrX	41361351	41361730	+	0	NA	intron (NR_126093, intron 18 of 18)	L2b|LINE|L2	27374	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
93109	chr17	17684901	17685300	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	3642	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
172453	chr4	1984721	1984980	+	0	NA	exon (NM_005663, exon 8 of 11)	exon (NM_005663, exon 8 of 11)	1627	NR_030641	100126332		NR_030641	ENSG00000284587	MIR943	MIRN943|hsa-mir-943	microRNA 943	ncRNA
186097	chr5	134118201	134119030	+	0	NA	intron (NR_033449, intron 1 of 7)	intron (NR_033449, intron 1 of 7)	3002	NM_001134851	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
73206	chr15	41557571	41558340	+	0	NA	Intergenic	Intergenic	-1257	NM_006293	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
161325	chr3	39417221	39418250	+	0	NA	Intergenic	LTR13|LTR|ERVK	6681	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
145481	chr20	43840471	43840930	+	0	NA	Intergenic	L2b|LINE|L2	-54018	NR_134577	105372626		NR_134577	ENSG00000233277	LINC01728	-	long intergenic non-protein coding RNA 1728	ncRNA
46283	chr11	124863171	124863430	+	0	NA	Intergenic	Intergenic	-2132	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
47486	chr12	3947601	3948650	+	0	NA	Intergenic	AluSz6|SINE|Alu	-74677	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
235982	chrX	53783701	53783930	+	0	NA	Intergenic	L1PA4|LINE|L1	-97096	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
97127	chr17	42537971	42538300	+	0	NA	intron (NM_000263, intron 2 of 5)	L2c|LINE|L2	1894	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
15935	chr1	151820901	151821580	+	0	NA	intron (NM_005060, intron 2 of 10)	intron (NM_005060, intron 2 of 10)	4856	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
64465	chr14	24258721	24259230	+	0	NA	intron (NM_000359, intron 7 of 14)	intron (NM_000359, intron 7 of 14)	4202	NM_000359	7051		NM_000359	ENSG00000092295	TGM1	ARCI1|ICR2|KTG|LI|LI1|TGASE|TGK	transglutaminase 1	protein-coding
181160	chr5	39023701	39024180	+	0	NA	intron (NM_001285439, intron 2 of 38)	intron (NM_001285439, intron 2 of 38)	50459	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
49058	chr12	14403571	14404430	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	18719	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
105284	chr17	82484071	82484230	+	0	NA	intron (NM_031968, intron 9 of 11)	intron (NM_031968, intron 9 of 11)	25409	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
155480	chr22	38498771	38499130	+	0	NA	intron (NM_006386, intron 3 of 12)	AluSx1|SINE|Alu	7361	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
69894	chr14	99430501	99430780	+	0	NA	intron (NM_032233, intron 6 of 12)	L2c|LINE|L2	50219	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
231208	chr9	129949001	129949200	+	0	NA	intron (NM_001363755, intron 6 of 15)	intron (NM_001363755, intron 6 of 15)	79495	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
102722	chr17	76191371	76192650	+	0	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	48483	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
9057	chr1	44818691	44821230	+	0	NA	3' UTR (NM_001166292, exon 23 of 23)	3' UTR (NM_001166292, exon 23 of 23)	11478	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
128721	chr2	61766921	61767380	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	86910	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
2222	chr1	8848751	8849650	+	0	NA	Intergenic	(AAAT)n|Simple_repeat|Simple_repeat	17390	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
194129	chr6	31968071	31968230	+	0	NA	intron (NM_006929, intron 23 of 27).3	intron (NM_006929, intron 23 of 27).3	-3025	NR_026717	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
46076	chr11	122804801	122805000	+	0	NA	intron (NM_032873, intron 11 of 13)	L1MEi|LINE|L1	-33600	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
112405	chr19	6165921	6166380	+	0	NA	intron (NM_030924, intron 7 of 14)	intron (NM_030924, intron 7 of 14)	30483	NM_001289179	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
58956	chr13	19785201	19785400	+	0	NA	Intergenic	L2|LINE|L2	-2264	NR_149053	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
119233	chr19	39470271	39470750	+	0	NA	exon (NM_001319991, exon 17 of 29)	exon (NM_001319991, exon 17 of 29)	2288	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
135089	chr2	157327451	157327980	+	0	NA	promoter-TSS (NM_001009959)	promoter-TSS (NM_001009959)	-3	NM_001009959	57471		NM_020711	ENSG00000136541	ERMN	JN|KIAA1189	ermin	protein-coding
205087	chr7	6658721	6659530	+	0	NA	TTS (NM_001278559)	TTS (NM_001278559)	21807	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
127179	chr2	38379001	38379200	+	0	NA	promoter-TSS (NM_001330462)	promoter-TSS (NM_001330462)	-516	NM_001330462	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
5731	chr1	26416601	26417430	+	0	NA	intron (NM_024674, intron 2 of 3)	intron (NM_024674, intron 2 of 3)	6198	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
118923	chr19	38735201	38736600	+	0	NA	intron (NM_144691, intron 12 of 20)	CpG	8574	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
27250	chr10	29658861	29659830	+	0	NA	intron (NM_003174, intron 2 of 35)	intron (NM_003174, intron 2 of 35)	-24374	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
65125	chr14	44958301	44958900	+	0	NA	intron (NM_017658, intron 1 of 4)	intron (NM_017658, intron 1 of 4)	2885	NM_001308112	54813		NM_017658	ENSG00000179454	KLHL28	BTBD5	kelch like family member 28	protein-coding
17178	chr1	156228571	156229480	+	0	NA	intron (NM_001199654, intron 2 of 4)	AluSc8|SINE|Alu	-13159	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
68532	chr14	89177471	89178050	+	0	NA	intron (NM_001085471, intron 6 of 6)	LTR50|LTR|ERVL	239473	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
138971	chr2	218274501	218275080	+	0	NA	non-coding (NR_135643, exon 11 of 11)	non-coding (NR_135643, exon 11 of 11)	4271	NM_001077399	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
160058	chr3	18559421	18559980	+	0	NA	Intergenic	Intergenic	-114108	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
230391	chr9	128101521	128101980	+	0	NA	intron (NR_049766, intron 3 of 9)	intron (NR_049766, intron 3 of 9)	3268	NR_049766	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
171428	chr3	196253371	196254130	+	0	NA	intron (NM_005017, intron 4 of 9)	intron (NM_005017, intron 4 of 9)	33976	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
178625	chr4	152110301	152110700	+	0	NA	Intergenic	Intergenic	9682	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
104891	chr17	81885671	81887200	+	0	NA	Intergenic	Intergenic	-4355	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
222274	chr8	133294451	133294550	+	0	NA	intron (NM_001374844, intron 1 of 15)	intron (NM_001374844, intron 1 of 15)	2190	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
89617	chr16	89308221	89308650	+	0	NA	intron (NM_013275, intron 3 of 12)	intron (NM_013275, intron 3 of 12)	-12017	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
79025	chr16	64671	64930	+	0	NA	exon (NM_022450, exon 3 of 18)	exon (NM_022450, exon 3 of 18)	7831	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
187203	chr5	140668971	140670180	+	0	NA	exon (NM_017706, exon 7 of 7)	exon (NM_017706, exon 7 of 7)	4001	NM_194249	373863		NM_194249	ENSG00000256453	DND1	RBMS4	DND microRNA-mediated repression inhibitor 1	protein-coding
105330	chr17	82595151	82595450	+	0	NA	intron (NM_004514, intron 8 of 8)	intron (NM_004514, intron 8 of 8)	53144	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
15457	chr1	150341001	150341400	+	0	NA	intron (NR_146768, intron 9 of 15)	intron (NR_146768, intron 9 of 15)	19667	NM_004698	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
141863	chr20	651171	651330	+	0	NA	intron (NM_080725, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	1950	NM_080725	140809		NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
111222	chr19	3502301	3502730	+	0	NA	Intergenic	Intergenic	-1841	NM_001145165	83475		NM_031304	ENSG00000129932	DOHH	HLRC1|NEDMVIC|hDOHH	deoxyhypusine hydroxylase	protein-coding
225551	chr9	35844751	35845450	+	0	NA	intron (NM_016446, intron 7 of 10)	L4_A_Mam|LINE|RTE-X	15872	NM_001042590	51754		NM_016446	ENSG00000137103	TMEM8B	C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6|NGX6a	transmembrane protein 8B	protein-coding
215504	chr7	158662921	158663680	+	0	NA	intron (NM_001281932, intron 16 of 28)	intron (NM_001281932, intron 16 of 28)	41504	NM_001281932	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
125262	chr2	10436601	10437580	+	0	NA	Intergenic	Intergenic	9759	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
11310	chr1	89306201	89306400	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-15938	NR_077244	729930		NR_077244		LOC729930	-	intraflagellar transport associated protein pseudogene	pseudo
22053	chr1	211255151	211255750	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-3827	NR_146434	55758		NM_018254	ENSG00000117625	RCOR3	-	REST corepressor 3	protein-coding
17871	chr1	159945501	159946600	+	0	NA	promoter-TSS (NM_020789)	promoter-TSS (NM_020789)	-437	NM_020789	57549		NM_020789	ENSG00000085552	IGSF9	FP18798|IGSF9A|Nrt1	immunoglobulin superfamily member 9	protein-coding
164673	chr3	67083051	67083580	+	0	NA	Intergenic	LTR37B|LTR|ERV1	85008	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
131838	chr2	98664211	98666030	+	0	NA	intron (NM_012214, intron 4 of 15)	AluSc8|SINE|Alu	-1647	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
147636	chr20	62158871	62159230	+	0	NA	intron (NR_125980, intron 3 of 12)	intron (NR_125980, intron 3 of 12)	15281	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
40914	chr11	65204501	65205330	+	0	NA	intron (NM_001198868, intron 11 of 21)	CpG	-8925	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
13193	chr1	112624071	112625130	+	0	NA	intron (NM_006135, intron 1 of 9)	AluSx|SINE|Alu	4768	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
154886	chr22	37148051	37148950	+	0	NA	intron (NM_001346222, intron 1 of 9)	MIRb|SINE|MIR	1416	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
227968	chr9	95048271	95048880	+	0	NA	intron (NM_001193329, intron 12 of 15)	CpG	-16775	NR_106729	102466518		NR_106729	ENSG00000274115	MIR6081	hsa-mir-6081	microRNA 6081	ncRNA
1647	chr1	3799201	3799600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2902	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
92991	chr17	17170721	17171580	+	0	NA	intron (NM_001364716, intron 16 of 23)	intron (NM_001364716, intron 16 of 23)	35183	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
230897	chr9	129232121	129232380	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-50166	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
42609	chr11	72110451	72110550	+	0	NA	3' UTR (NM_001145308, exon 7 of 7)	3' UTR (NM_001145308, exon 7 of 7)	1732	NM_001278494	25906		NM_014042	ENSG00000110200	ANAPC15	APC15|C11orf51|HSPC020	anaphase promoting complex subunit 15	protein-coding
22786	chr1	224428421	224429380	+	0	NA	intron (NM_001115113, intron 3 of 13)	AluSq2|SINE|Alu	-5740	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
100899	chr17	64400771	64401130	+	0	NA	Intergenic	AluY|SINE|Alu	-10090	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
27770	chr10	35345301	35345500	+	0	NA	intron (NM_001282852, intron 1 of 8)	AluY|SINE|Alu	8526	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
48207	chr12	8085201	8085980	+	0	NA	intron (NR_024260, intron 1 of 6)	MIRb|SINE|MIR	3316	NM_015509	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
51080	chr12	49955401	49956200	+	0	NA	3' UTR (NM_000486, exon 4 of 4)	3' UTR (NM_000486, exon 4 of 4)	5063	NM_000486	359		NM_000486	ENSG00000167580	AQP2	AQP-CD|NDI2|WCH-CD	aquaporin 2	protein-coding
184707	chr5	109349451	109349550	+	0	NA	intron (NM_014819, intron 7 of 9)	LTR41|LTR|ERVL	-23131	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
1708	chr1	5386801	5387630	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	475526	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
60104	chr13	36981121	36981450	+	0	NA	intron (NM_001142364, intron 5 of 8)	intron (NM_001142364, intron 5 of 8)	18055	NM_013338	29880		NM_013338	ENSG00000120697	ALG5	PKD7|bA421P11.2	ALG5 dolichyl-phosphate beta-glucosyltransferase	protein-coding
234399	chrX	16719051	16720350	+	0	NA	promoter-TSS (NR_033181)	promoter-TSS (NR_033181)	88	NR_033181	94056		NM_032796	ENSG00000169895	SYAP1	BSTA|PRO3113	synapse associated protein 1	protein-coding
104397	chr17	81043871	81044700	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	9134	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
122226	chr19	48985801	48987900	+	0	NA	intron (NM_001161587, intron 2 of 14)	intron (NM_001161587, intron 2 of 14)	6459	NR_027763	2997		NM_002103	ENSG00000104812	GYS1	GSY|GYS	glycogen synthase 1	protein-coding
74536	chr15	60488121	60488380	+	0	NA	TTS (NM_002943)	TTS (NM_002943)	9072	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
49126	chr12	14884471	14885130	+	0	NA	intron (NM_000900, intron 1 of 3)	intron (NM_000900, intron 1 of 3)	1054	NM_000900	4256		NM_000900	ENSG00000111341	MGP	GIG36|MGLAP|NTI	matrix Gla protein	protein-coding
44837	chr11	114075751	114076250	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	12789	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
156924	chr22	42296271	42297150	+	0	NA	Intergenic	Intergenic	-12783	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
99487	chr17	50187901	50188180	+	0	NA	intron (NM_000088, intron 44 of 50)	intron (NM_000088, intron 44 of 50)	13591	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
188089	chr5	150272671	150272980	+	0	NA	intron (NM_171825, intron 2 of 17)	intron (NM_171825, intron 2 of 17)	16948	NM_015981	815		NM_015981	ENSG00000070808	CAMK2A	CAMKA|CaMKIINalpha|CaMKIIalpha|MRD53|MRT63	calcium/calmodulin dependent protein kinase II alpha	protein-coding
3303	chr1	15350401	15350800	+	0	NA	intron (NM_052929, intron 18 of 30)	MIR|SINE|MIR	-6717	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
39144	chr11	52044951	52045050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1635853	NR_024504	646813		NR_024504		LOC646813	-	DExH-box helicase 9 pseudogene	pseudo
44014	chr11	94925501	94926100	+	0	NA	Intergenic	MER92C|LTR|ERV1	47756	NM_016403	51503		NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
92782	chr17	15782851	15783030	+	0	NA	Intergenic	CpG	-3910	NR_002211	4213		NR_002211		MEIS3P1	MEIS3|MEIS4|MRG2	Meis homeobox 3 pseudogene 1	pseudo
71969	chr15	25414271	25414430	+	0	NA	intron (NM_001354539, intron 1 of 13)	L2c|LINE|L2	23879	NM_001354526	7337		NM_000462	ENSG00000114062	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A|PIX1	ubiquitin protein ligase E3A	protein-coding
149899	chr21	36125271	36126030	+	0	NA	intron (NR_040084, intron 1 of 3)	MLT1C|LTR|ERVL-MaLR	990	NR_040084	100133286		NR_040084	ENSG00000230212	CBR1-AS1	-	CBR1 antisense RNA 1	ncRNA
196359	chr6	43227921	43228180	+	0	NA	intron (NM_006443, intron 1 of 3)	AluSz|SINE|Alu	1431	NM_199184	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
75961	chr15	70479451	70479550	+	0	NA	Intergenic	LTR33|LTR|ERVL	26428	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
94659	chr17	30278071	30278350	+	0	NA	intron (NM_000386, intron 6 of 11)	intron (NM_000386, intron 6 of 11)	13734	NM_000386	642		NM_000386	ENSG00000108578	BLMH	BH|BMH	bleomycin hydrolase	protein-coding
17669	chr1	157696971	157697500	+	0	NA	non-coding (NR_135216, exon 6 of 16)	non-coding (NR_135216, exon 6 of 16)	3534	NR_135217	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
88900	chr16	87768901	87769930	+	0	NA	intron (NR_120309, intron 3 of 3)	intron (NR_120309, intron 3 of 3)	-3429	NM_001184856	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
190121	chr5	177982171	177982330	+	0	NA	Intergenic	Intergenic	13992	NM_006261	5626		NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
63832	chr14	21498401	21499650	+	0	NA	exon (NM_019852, exon 10 of 11)	exon (NM_019852, exon 10 of 11)	12315	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
164774	chr3	69120871	69121330	+	0	NA	intron (NM_198271, intron 1 of 2)	intron (NM_198271, intron 1 of 2)	1495	NM_198271	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
62352	chr13	99199941	99202700	+	0	NA	promoter-TSS (NR_036532)	promoter-TSS (NR_036532)	466	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
185971	chr5	133108601	133109300	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	56937	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
248	chr1	910721	911100	+	0	NA	Intergenic	Intergenic	8782	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
142389	chr20	3814921	3815180	+	0	NA	Intergenic	Intergenic	-5474	NM_001204446	55317		NM_018347	ENSG00000125843	AP5S1	C20orf29	adaptor related protein complex 5 subunit sigma 1	protein-coding
82735	chr16	21300621	21300980	+	0	NA	promoter-TSS (NR_026675)	promoter-TSS (NR_026675)	-49	NR_026675	400508		NM_001101368		CRYM-AS1	NCRNA00169	CRYM antisense RNA 1	ncRNA
76175	chr15	73081401	73081700	+	0	NA	intron (NM_001172623, intron 1 of 27)	intron (NM_001172623, intron 1 of 27)	29066	NM_001172623	4756		NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
97329	chr17	43263301	43263830	+	0	NA	Intergenic	AluSz|SINE|Alu	3258	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
219803	chr8	81279071	81279430	+	0	NA	Intergenic	Tigger19a|DNA|TcMar-Tigger	-1286	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
107522	chr18	48221971	48222330	+	0	NA	intron (NM_001371285, intron 1 of 5)	intron (NM_001371285, intron 1 of 5)	-28224	NM_001371288	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
89952	chr16	89761051	89762230	+	0	NA	intron (NM_001286167, intron 29 of 42)	AluJb|SINE|Alu	40103	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
137288	chr2	195544421	195544680	+	0	NA	Intergenic	L2c|LINE|L2	-112408	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
181019	chr5	35860751	35861050	+	0	NA	non-coding (NR_120485, exon 2 of 6)	non-coding (NR_120485, exon 2 of 6)	4009	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
166476	chr3	114254171	114254330	+	0	NA	Intergenic	Intergenic	-16672	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
56684	chr12	120013201	120014470	+	0	NA	intron (NR_147894, intron 3 of 8)	intron (NR_147894, intron 3 of 8)	23991	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
105766	chr18	2786651	2787150	+	0	NA	intron (NM_015295, intron 45 of 47)	L1ME3A|LINE|L1	-60106	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
93307	chr17	18162071	18162230	+	0	NA	intron (NM_016239, intron 56 of 64)	intron (NM_016239, intron 56 of 64)	-21678	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
81703	chr16	11244351	11245400	+	0	NA	Intergenic	AluSz|SINE|Alu	11307	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
170874	chr3	192894771	192895130	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	22906	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
209215	chr7	75484471	75484900	+	0	NA	intron (NR_160303, intron 1 of 4)	AluSz6|SINE|Alu	1614	NR_160304	100101267		NM_001099415	ENSG00000272391	POM121C	POM121-2	POM121 transmembrane nucleoporin C	protein-coding
230436	chr9	128155951	128156700	+	0	NA	Intergenic	Intergenic	-3940	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
61598	chr13	73062621	73062930	+	0	NA	intron (NM_001730, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	3770	NM_001730	688		NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	KLF transcription factor 5	protein-coding
79360	chr16	628801	629430	+	0	NA	3' UTR (NM_021168, exon 6 of 6)	3' UTR (NM_021168, exon 6 of 6)	-1870	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
161541	chr3	42649871	42650600	+	0	NA	intron (NR_125400, intron 1 of 2)	intron (NR_125400, intron 1 of 2)	-3462	NM_145166	92999		NM_145166	ENSG00000114853	ZBTB47	ZNF651	zinc finger and BTB domain containing 47	protein-coding
87967	chr16	80526501	80526850	+	0	NA	intron (NR_120307, intron 2 of 5)	intron (NR_120307, intron 2 of 5)	-14059	NM_001305017	83657		NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein light chain roadblock-type 2	protein-coding
114401	chr19	12629751	12630250	+	0	NA	3' UTR (NM_153358, exon 4 of 4)	3' UTR (NM_153358, exon 4 of 4)	19080	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
124454	chr19	58515671	58516230	+	0	NA	intron (NM_001316980, intron 2 of 2)	intron (NM_001316980, intron 2 of 2)	3652	NM_001316978	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
185308	chr5	126747751	126748410	+	0	NA	Intergenic	MER34A|LTR|ERV1	28406	NR_134485	102723557		NR_134485	ENSG00000251072	LMNB1-DT	-	LMNB1 divergent transcript	ncRNA
196053	chr6	42105601	42106100	+	0	NA	exon (NM_001164446, exon 4 of 5)	exon (NM_001164446, exon 4 of 5)	36770	NM_001164446	647024		NM_001164446	ENSG00000188112	C6orf132	LncCCLM|bA7K24.2	chromosome 6 open reading frame 132	protein-coding
12200	chr1	100385701	100386980	+	0	NA	intron (NM_001319210, intron 3 of 16)	intron (NM_001319210, intron 3 of 16)	33834	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
188383	chr5	152159901	152160100	+	0	NA	intron (NR_109876, intron 1 of 2)	L1PA8|LINE|L1	201102	NR_109876	101927115		NR_109876	ENSG00000254226	LINC01933	CTB-12O2.1	long intergenic non-protein coding RNA 1933	ncRNA
67140	chr14	68685321	68686580	+	0	NA	Intergenic	Intergenic	-57163	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
132594	chr2	107916251	107916350	+	0	NA	Intergenic	Intergenic	-70224	NM_021815	60482		NM_021815	ENSG00000115665	SLC5A7	CHT|CHT1|CMS20|DHMNVP|HMN7A|HMND7|hCHT1	solute carrier family 5 member 7	protein-coding
175051	chr4	53362901	53364100	+	0	NA	intron (NM_152540, intron 1 of 8)	intron (NM_152540, intron 1 of 8)	2561	NM_152540	152579		NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
98646	chr17	47819571	47820130	+	0	NA	intron (NM_145798, intron 3 of 22)	intron (NM_145798, intron 3 of 22)	1944	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
126756	chr2	30239251	30240430	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	8306	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
41842	chr11	67120101	67120500	+	0	NA	intron (NM_012308, intron 1 of 20)	intron (NM_012308, intron 1 of 20)	1037	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
140385	chr2	233066271	233066630	+	0	NA	intron (NM_001017915, intron 1 of 26).2	MIR|SINE|MIR	6108	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
159435	chr3	13652501	13653050	+	0	NA	intron (NR_027103, intron 1 of 5)	intron (NR_027103, intron 1 of 5)	2054	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
73723	chr15	45168551	45168650	+	0	NA	intron (NM_001301170, intron 3 of 3)	intron (NM_001301170, intron 3 of 3)	12607	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
79395	chr16	664471	664830	+	0	NA	intron (NM_145294, intron 34 of 40)	intron (NM_145294, intron 34 of 40)	-3433	NM_001352287	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
26629	chr10	22438751	22439230	+	0	NA	Intergenic	Intergenic	-1061	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
29068	chr10	67890401	67891280	+	0	NA	promoter-TSS (NM_001314049)	promoter-TSS (NM_001314049)	-562	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
17003	chr1	156009901	156010100	+	0	NA	intron (NM_003145, intron 5 of 5)	AluSg|SINE|Alu	10951	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
72147	chr15	29057751	29058250	+	0	NA	intron (NM_001353793, intron 3 of 12).2	intron (NM_001353793, intron 3 of 12).2	-12658	NM_001353797	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
133745	chr2	127479071	127479500	+	0	NA	Intergenic	Intergenic	47204	NM_017969	55677		NM_017969	ENSG00000163166	IWS1	-	interacts with SUPT6H, CTD assembly factor 1	protein-coding
181313	chr5	40337471	40337630	+	0	NA	Intergenic	L1PA6|LINE|L1	285259	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
127146	chr2	37711321	37712000	+	0	NA	Intergenic	Intergenic	-38711	NM_001371569	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
131467	chr2	96406551	96406650	+	0	NA	Intergenic	AluY|SINE|Alu	70834	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
201469	chr6	148755401	148755630	+	0	NA	intron (NM_005715, intron 1 of 7)	THE1C|LTR|ERVL-MaLR	8485	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
105798	chr18	2911151	2911250	+	0	NA	intron (NM_032048, intron 7 of 7)	MER50|LTR|ERV1	35423	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
36514	chr11	6418421	6419850	+	0	NA	promoter-TSS (NM_001164)	promoter-TSS (NM_001164)	-24	NR_047512	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
649	chr1	1350621	1350950	+	0	NA	Intergenic	CpG-90	-1367	NM_001330311	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
227640	chr9	92949301	92949950	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	2102	NM_001083536	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
142083	chr20	2467351	2467850	+	0	NA	intron (NM_003091, intron 2 of 6)	intron (NM_003091, intron 2 of 6)	3189	NM_003091	6628		NM_003091	ENSG00000125835	SNRPB	CCMS|COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B	small nuclear ribonucleoprotein polypeptides B and B1	protein-coding
23932	chr1	235093571	235094580	+	0	NA	Intergenic	Intergenic	-24257	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
52507	chr12	56043251	56043350	+	0	NA	intron (NM_001029, intron 2 of 3)	intron (NM_001029, intron 2 of 3)	1382	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
144928	chr20	36991921	36992380	+	0	NA	Intergenic	Intergenic	-40442	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
73188	chr15	41505221	41505480	+	0	NA	intron (NM_206961, intron 13 of 18)	intron (NM_206961, intron 13 of 18)	8477	NM_002344	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
227996	chr9	95505551	95506400	+	0	NA	intron (NM_001354919, intron 2 of 4)	CpG	1224	NM_001083607	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
14482	chr1	144527901	144528230	+	0	NA	Intergenic	Intergenic	23878	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
53718	chr12	68617521	68618480	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluJb|SINE|Alu	7101	NM_001251922	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
47260	chr12	1488671	1489430	+	0	NA	intron (NM_001301248, intron 18 of 18)	intron (NM_001301248, intron 18 of 18)	-11441	NR_028415	100292680		NR_028415	ENSG00000249628	LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
102895	chr17	76535521	76535800	+	0	NA	intron (NM_134268, intron 1 of 3)	intron (NM_134268, intron 1 of 3)	2049	NM_134268	114757		NM_134268	ENSG00000161544	CYGB	HGB|NOD|STAP	cytoglobin	protein-coding
156042	chr22	39973701	39974080	+	0	NA	TTS (NM_001291826)	TTS (NM_001291826)	-21064	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
147114	chr20	53930301	53930500	+	0	NA	Intergenic	Intergenic	-54691	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
152203	chr22	20120421	20120950	+	0	NA	intron (NM_002882, intron 2 of 5)	intron (NM_002882, intron 2 of 5)	2940	NM_001278641	5902		NM_002882	ENSG00000099901	RANBP1	HTF9A	RAN binding protein 1	protein-coding
109385	chr19	655051	655650	+	0	NA	intron (NM_194460, intron 1 of 8)	AluJb|SINE|Alu	7864	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
113177	chr19	8399871	8400230	+	0	NA	exon (NM_004218, exon 2 of 5)	exon (NM_004218, exon 2 of 5)	-9359	NR_038237	100507567		NR_038237	ENSG00000269386	RAB11B-AS1	MIR4999HG	RAB11B antisense RNA 1	ncRNA
47295	chr12	1663971	1664350	+	0	NA	Intergenic	Intergenic	-3780	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
235495	chrX	47093371	47093530	+	0	NA	TTS (NM_001282849)	TTS (NM_001282849)	15007	NM_152869	9104		NM_004683	ENSG00000130988	RGN	GNL|HEL-S-41|RC|SMP30	regucalcin	protein-coding
156199	chr22	40287701	40288700	+	0	NA	intron (NM_015088, intron 10 of 20)	intron (NM_015088, intron 10 of 20)	-58300	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
234093	chrX	9340821	9341400	+	0	NA	Intergenic	Intergenic	-122185	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
116119	chr19	17319571	17319950	+	0	NA	3' UTR (NM_024050, exon 5 of 5)	3' UTR (NM_024050, exon 5 of 5)	10197	NM_024050	79016		NM_024050	ENSG00000130311	DDA1	C19orf58|PCIA1	DET1 and DDB1 associated 1	protein-coding
28642	chr10	59830671	59830850	+	0	NA	intron (NM_005436, intron 3 of 8)	intron (NM_005436, intron 3 of 8)	75796	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
73881	chr15	50416101	50416300	+	0	NA	Intergenic	MER57D|LTR|ERV1	-8205	NM_001283049	9101		NM_005154	ENSG00000138592	USP8	HumORF8|PITA4|SPG59|UBPY	ubiquitin specific peptidase 8	protein-coding
154507	chr22	35700771	35701130	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-16922	NM_030642	80831		NM_030642	ENSG00000128313	APOL5	APOL-V|APOLV	apolipoprotein L5	protein-coding
42063	chr11	67480921	67481180	+	0	NA	Intergenic	L1MB2|LINE|L1	-1976	NM_003977	9049		NM_003977	ENSG00000110711	AIP	ARA9|FKBP16|FKBP37|PITA1|SMTPHN|XAP-2|XAP2	aryl hydrocarbon receptor interacting protein	protein-coding
93936	chr17	21307871	21308030	+	0	NA	intron (NM_145109, intron 9 of 11)	AluSx|SINE|Alu	19914	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
237318	chrX	118352421	118353480	+	0	NA	intron (NM_001184966, intron 1 of 17)	intron (NM_001184966, intron 1 of 17)	6844	NM_001184965	54521		NM_019045	ENSG00000131725	WDR44	RAB11BP|RPH11|SYM-4	WD repeat domain 44	protein-coding
600	chr1	1297701	1298400	+	0	NA	exon (NM_030649, exon 13 of 24)	exon (NM_030649, exon 13 of 24)	-1880	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
8178	chr1	39561121	39561380	+	0	NA	intron (NM_003819, intron 15 of 15)	MER20|DNA|hAT-Charlie	-1552	NR_144356	728448		NR_003929	ENSG00000291129	PPIEL	PPIEP1	peptidylprolyl isomerase E like (pseudogene)	pseudo
203448	chr7	372851	373150	+	0	NA	Intergenic	Intergenic	-6425	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
34252	chr10	131091051	131091350	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-4018	NR_120623	101927489		NR_120623	ENSG00000230098	TCERG1L-AS1	-	TCERG1L antisense RNA 1	ncRNA
3089	chr1	12196271	12196730	+	0	NA	intron (NM_001066, intron 8 of 9)	MER20|DNA|hAT-Charlie	4787	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
149877	chr21	35616171	35616330	+	0	NA	Intergenic	Intergenic	-35486	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
90685	chr17	1726271	1726630	+	0	NA	exon (NM_001163809, exon 1 of 10)	exon (NM_001163809, exon 1 of 10)	1746	NM_001163809	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
94351	chr17	28900621	28901300	+	0	NA	intron (NM_144683, intron 4 of 4)	intron (NM_144683, intron 4 of 4)	2119	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
174394	chr4	39135051	39135680	+	0	NA	Intergenic	LTR40b|LTR|ERVL	-47164	NM_001317924	57728		NM_025132	ENSG00000157796	WDR19	ATD5|CED4|CFAP66|DYF-2|FAP66|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SPGF72|SRTD5	WD repeat domain 19	protein-coding
109559	chr19	884871	885030	+	0	NA	exon (NM_005481, exon 6 of 16)	exon (NM_005481, exon 6 of 16)	8237	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
64781	chr14	34741621	34742400	+	0	NA	Intergenic	Intergenic	-27187	NR_028130	1073		NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding
103208	chr17	77476421	77476880	+	0	NA	intron (NM_001113495, intron 1 of 9)	intron (NM_001113495, intron 1 of 9)	1015	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
17361	chr1	156508201	156509150	+	0	NA	Intergenic	Intergenic	-7900	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
60092	chr13	36346001	36347080	+	0	NA	promoter-TSS (NM_015087)	promoter-TSS (NM_015087)	109	NR_045181	100507135		NR_045180	ENSG00000120664	SPART-AS1	C13orf43|SPG20-AS1|SPG20OS	SPART antisense RNA 1	ncRNA
39830	chr11	62107951	62108530	+	0	NA	Intergenic	Intergenic	-15771	NM_020238	3619		NM_020238	ENSG00000149503	INCENP	-	inner centromere protein	protein-coding
48719	chr12	10698671	10698830	+	0	NA	TTS (NM_001145426)	TTS (NM_001145426)	24573	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
38787	chr11	47233201	47233400	+	0	NA	intron (NM_000107, intron 4 of 9)	intron (NM_000107, intron 4 of 9)	-15000	NM_001251935	10062		NM_005693	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	nuclear receptor subfamily 1 group H member 3	protein-coding
179015	chr4	164731871	164732150	+	0	NA	Intergenic	Intergenic	-22121	NM_001352885	100505989		NM_001352885	ENSG00000248771	SMIM31	LINC01207|h.EPR	small integral membrane protein 31	protein-coding
59406	chr13	25267771	25268150	+	0	NA	intron (NR_169592, intron 2 of 13)	intron (NR_169592, intron 2 of 13)	19528	NM_001385233	9107		NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
126552	chr2	28614271	28614900	+	0	NA	intron (NM_153021, intron 44 of 57)	intron (NM_153021, intron 44 of 57)	48228	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
111146	chr19	3287771	3288230	+	0	NA	intron (NR_033342, intron 10 of 12)	Tigger9b|DNA|TcMar-Tigger	62722	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
27934	chr10	42069421	42069680	+	0	NA	Intergenic	Intergenic	298495	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
180930	chr5	34657471	34657630	+	0	NA	intron (NM_001145520, intron 1 of 17)	intron (NM_001145520, intron 1 of 17)	1059	NM_001145520	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
15041	chr1	148373401	148374480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11407	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
11049	chr1	84996801	84999380	+	0	NA	promoter-TSS (NM_001330647)	promoter-TSS (NM_001330647)	-977	NM_153259	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
226261	chr9	67832251	67832450	+	0	NA	Intergenic	REP522|Satellite|telo	-26581	NM_032250	84210		NM_032250	ENSG00000260691	ANKRD20A1	ANKRD20A	ankyrin repeat domain 20 family member A1	protein-coding
220489	chr8	100496071	100496230	+	0	NA	Intergenic	MIRb|SINE|MIR	63609	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
211640	chr7	106126401	106126880	+	0	NA	Intergenic	Intergenic	-14064	NM_001381918	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
97621	chr17	44143401	44143800	+	0	NA	intron (NM_001171251, intron 1 of 9)	AluSx3|SINE|Alu	1670	NM_001321310	78995		NM_024032	ENSG00000125319	HROB	C17orf53|MCM8IP	homologous recombination factor with OB-fold	protein-coding
80632	chr16	2987571	2988230	+	0	NA	Intergenic	Intergenic	-1154	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
4341	chr1	20588951	20589050	+	0	NA	promoter-TSS (NM_001785)	promoter-TSS (NM_001785)	-97	NM_001785	978		NM_001785	ENSG00000158825	CDA	CDD	cytidine deaminase	protein-coding
173725	chr4	15960521	15960980	+	0	NA	intron (NM_031950, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	2425	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
34434	chr10	132416301	132416730	+	0	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	19315	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
43997	chr11	94504751	94505080	+	0	NA	Intergenic	Intergenic	-7546	NM_001190462	643037		NM_001190462	ENSG00000257057	C11orf97	LINC01171	chromosome 11 open reading frame 97	protein-coding
71747	chr15	20759971	20760680	+	0	NA	Intergenic	Intergenic	-4174	NR_027992	606		NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
230879	chr9	129199071	129199430	+	0	NA	Intergenic	L2a|LINE|L2	-20989	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
100877	chr17	64345301	64345700	+	0	NA	intron (NM_000442, intron 13 of 15)	AluSq2|SINE|Alu	45360	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
42301	chr11	68456251	68456350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4452	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
213588	chr7	139380871	139381030	+	0	NA	intron (NM_016019, intron 2 of 9)	intron (NM_016019, intron 2 of 9)	21056	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
136981	chr2	190469871	190470180	+	0	NA	intron (NM_001375987, intron 3 of 6)	intron (NM_001375987, intron 3 of 6)	532	NM_001375993	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
140559	chr2	233294421	233295080	+	0	NA	3' UTR (NM_001190267, exon 18 of 18)	3' UTR (NM_001190267, exon 18 of 18)	6074	NR_003006	677772		NR_003006	ENSG00000251791	SCARNA6	U88	small Cajal body-specific RNA 6	ncRNA
99039	chr17	48878851	48879450	+	0	NA	intron (NR_135674, intron 3 of 3)	intron (NR_135674, intron 3 of 3)	-13637	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
83265	chr16	23966871	23967230	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	131067	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
211996	chr7	114082951	114083250	+	0	NA	Intergenic	Intergenic	-3227	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
166839	chr3	123026451	123026550	+	0	NA	intron (NR_046079, intron 1 of 22)	CpG	1263	NM_001031702	54437		NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
89111	chr16	88494801	88495000	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	25982	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
64823	chr14	35048801	35049200	+	0	NA	intron (NM_173607, intron 1 of 4)	AluSg7|SINE|Alu	2728	NM_173607	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
96953	chr17	42190801	42191580	+	0	NA	exon (NM_001142623, exon 6 of 10)	exon (NM_001142623, exon 6 of 10)	3304	NM_001142623	84514		NM_032484	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
123621	chr19	54542571	54543300	+	0	NA	intron (NR_136268, intron 7 of 8).4	AluY|SINE|Alu	10243	NR_026716	90011		NM_033206	ENSG00000290933	KIR3DX1	KIR3DL0|LENG12	killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)	pseudo
64992	chr14	38078251	38079150	+	0	NA	Intergenic	Intergenic	-129204	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
42972	chr11	73774621	73774880	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-13124	NR_134658	51642		NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48|mL48	mitochondrial ribosomal protein L48	protein-coding
53386	chr12	64689201	64689650	+	0	NA	intron (NM_178169, intron 3 of 4)	L2c|LINE|L2	-66820	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
184882	chr5	112651851	112651950	+	0	NA	Intergenic	AluYc|SINE|Alu	23464	NR_104672	102467214		NR_104672	ENSG00000250358	LINC02200	-	long intergenic non-protein coding RNA 2200	ncRNA
8218	chr1	39680001	39680200	+	0	NA	3' UTR (NM_001282397, exon 3 of 3)	3' UTR (NM_001282397, exon 3 of 3)	-8062	NM_032526	84618		NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
199109	chr6	111681751	111681930	+	0	NA	intron (NM_001370529, intron 10 of 11)	MIR|SINE|MIR	-75566	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
83290	chr16	24093021	24093280	+	0	NA	intron (NM_212535, intron 6 of 16)	intron (NM_212535, intron 6 of 16)	-109966	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
16338	chr1	154268251	154268550	+	0	NA	intron (NM_001375615, intron 25 of 27)	AluSx1|SINE|Alu	-4229	NM_001018837	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
65236	chr14	49867051	49867150	+	0	NA	Intergenic	AluY|SINE|Alu	-4251	NR_027260	378706		NR_027260	ENSG00000274012	RN7SL2	7L1C|7L30.1|7SL1c|RNSRP2	RNA component of signal recognition particle 7SL2	scRNA
89818	chr16	89567301	89568650	+	0	NA	Intergenic	Intergenic	6545	NR_002450	606500		NR_002450		SNORD68	HBII-202	small nucleolar RNA, C/D box 68	snoRNA
113924	chr19	10716071	10716380	+	0	NA	Intergenic	AluSq|SINE|Alu	-1828	NM_004945	1785		NM_004945	ENSG00000079805	DNM2	CMT2M|CMTDI1|CMTDIB|DI-CMTB|DYN2|DYNII|LCCS5	dynamin 2	protein-coding
234377	chrX	15814721	15815230	+	0	NA	intron (NM_005089, intron 7 of 10)	intron (NM_005089, intron 7 of 10)	24491	NM_005089	8233		NM_005089	ENSG00000169249	ZRSR2	U2AF1-RS2|U2AF1L2|U2AF1RS2|URP|ZC3H22	zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2	protein-coding
172188	chr4	1242451	1242850	+	0	NA	intron (NM_001377192, intron 1 of 9)	intron (NM_001377192, intron 1 of 9)	6078	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
214241	chr7	148877421	148878200	+	0	NA	intron (NM_001203248, intron 1 of 19)	intron (NM_001203248, intron 1 of 19)	5675	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
104379	chr17	81027771	81028730	+	0	NA	TTS (NR_026857)	TTS (NR_026857)	6469	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
232875	chr9	136826251	136826750	+	0	NA	intron (NM_024718, intron 3 of 14)	intron (NM_024718, intron 3 of 14)	-4457	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
66164	chr14	60562251	60562350	+	0	NA	Intergenic	Intergenic	53154	NM_007374	4990		NM_007374	ENSG00000184302	SIX6	MCOPCT2|ODRMD|OPTX2|Six9	SIX homeobox 6	protein-coding
72010	chr15	26081951	26082930	+	0	NA	Intergenic	CpG	-33373	NR_038852	503519		NR_038851	ENSG00000259150	LINC00929	-	long intergenic non-protein coding RNA 929	ncRNA
113042	chr19	8001751	8002730	+	0	NA	intron (NM_001419, intron 1 of 5)	L2c|LINE|L2	3401	NM_001419	1994		NM_001419	ENSG00000066044	ELAVL1	ELAV1|HUR|Hua|MelG	ELAV like RNA binding protein 1	protein-coding
142555	chr20	5131601	5131800	+	0	NA	intron (NM_003818, intron 1 of 12)	MIRb|SINE|MIR	4692	NM_003818	8760		NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
232340	chr9	135479301	135479550	+	0	NA	promoter-TSS (NM_014811)	promoter-TSS (NM_014811)	-357	NM_014811	9858		NM_014811	ENSG00000196422	PPP1R26	KIAA0649|NRBE3	protein phosphatase 1 regulatory subunit 26	protein-coding
225928	chr9	40629571	40629950	+	0	NA	Intergenic	Intergenic	129779	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
22582	chr1	222897601	222897800	+	0	NA	intron (NM_001377228, intron 1 of 7)	intron (NM_001377228, intron 1 of 7)	-30724	NM_001369594	84976		NM_032890	ENSG00000154309	DISP1	DISPA	dispatched RND transporter family member 1	protein-coding
211968	chr7	112791501	112791930	+	0	NA	Intergenic	MER51A|LTR|ERV1	-1322	NM_001287497	64418		NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
21186	chr1	203802571	203802730	+	0	NA	5' UTR (NM_001376360, exon 2 of 18)	5' UTR (NM_001376360, exon 2 of 18)	5127	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
156177	chr22	40225601	40225830	+	0	NA	intron (NM_015088, intron 1 of 20)	AluSz|SINE|Alu	47790	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
125584	chr2	16654721	16655380	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	10784	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
74732	chr15	63196901	63197150	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	7419	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
104073	chr17	80223901	80224980	+	0	NA	intron (NM_001166348, intron 4 of 16)	intron (NM_001166348, intron 4 of 16)	4013	NM_001166348	284129		NM_173626	ENSG00000181045	SLC26A11	-	solute carrier family 26 member 11	protein-coding
186046	chr5	134051201	134051600	+	0	NA	Intergenic	Intergenic	-46425	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
105475	chr17	83067601	83068200	+	0	NA	Intergenic	Intergenic	-11709	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
196585	chr6	44180221	44180800	+	0	NA	intron (NM_007058, intron 15 of 22)	intron (NM_007058, intron 15 of 22)	21690	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
37423	chr11	17298121	17298600	+	0	NA	intron (NM_001352667, intron 3 of 11)	AluJo|SINE|Alu	21390	NM_001352672	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
113199	chr19	8444371	8446180	+	0	NA	intron (NM_031203, intron 1 of 16)	CpG	300	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
153119	chr22	23697471	23698400	+	0	NA	intron (NM_153615, intron 9 of 10)	intron (NM_153615, intron 9 of 10)	1519	NM_001329425	266747		NM_153615	ENSG00000159496	RGL4	Rgr	ral guanine nucleotide dissociation stimulator like 4	protein-coding
86541	chr16	67180501	67180730	+	0	NA	5' UTR (NM_001369682, exon 3 of 8)	5' UTR (NM_001369682, exon 3 of 8)	3348	NM_001369680	653319		NM_001040715	ENSG00000196123	MATCAP1	KIAA0895L|TMCP1	microtubule associated tyrosine carboxypeptidase 1	protein-coding
36226	chr11	3626321	3626580	+	0	NA	promoter-TSS (NR_002720)	promoter-TSS (NR_002720)	-10	NR_002720	7221		NR_002720	ENSG00000290962	TRPC2	-	transient receptor potential cation channel subfamily C member 2 (pseudogene)	pseudo
22318	chr1	213871321	213871580	+	0	NA	intron (NR_037850, intron 4 of 5)	intron (NR_037850, intron 4 of 5)	-53299	NR_046189	100861504		NR_046189		LINC00538	PROX1UT|Yiya	long intergenic non-protein coding RNA 538	ncRNA
76416	chr15	74778871	74779660	+	0	NA	Intergenic	MER83|LTR|ERV1	-2815	NM_001127190	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
24923	chr10	1074921	1075350	+	0	NA	intron (NM_014023, intron 2 of 13)	Charlie23a|DNA|hAT-Charlie	-18431	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
2025	chr1	7659501	7659700	+	0	NA	intron (NM_001349608, intron 6 of 21)	intron (NM_001349608, intron 6 of 21)	-10130	NM_001349614	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
171872	chr4	765471	766330	+	0	NA	intron (NM_001317836, intron 11 of 11)	intron (NM_001317836, intron 11 of 11)	15948	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
234520	chrX	19564571	19565130	+	0	NA	intron (NM_001353892, intron 14 of 17)	MER20|DNA|hAT-Charlie	-49589	NM_001001671	389840		NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
166765	chr3	122322401	122322800	+	0	NA	Intergenic	L1MEd|LINE|L1	-2648	NM_005213	1475		NM_005213	ENSG00000121552	CSTA	AREI|PSS4|STF1|STFA	cystatin A	protein-coding
50310	chr12	46470001	46470350	+	0	NA	non-coding (NR_125379, exon 3 of 4)	non-coding (NR_125379, exon 3 of 4)	86068	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
67017	chr14	67514561	67516280	+	0	NA	promoter-TSS (NM_182526)	promoter-TSS (NM_182526)	65	NM_001348548	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
37375	chr11	16785401	16786000	+	0	NA	intron (NM_001329630, intron 24 of 26)	intron (NM_001329630, intron 24 of 26)	47053	NM_014267	10944		NM_014267	ENSG00000110696	C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
24892	chr10	1011371	1011730	+	0	NA	intron (NM_012341, intron 13 of 16)	intron (NM_012341, intron 13 of 16)	-11087	NR_027709	55853		NM_018470	ENSG00000232656	IDI2-AS1	C10orf110|HT009|IDI2-AS	IDI2 antisense RNA 1	ncRNA
77213	chr15	80991151	80991700	+	0	NA	Intergenic	Intergenic	-1606	NR_126328	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
222618	chr8	141059171	141059330	+	0	NA	Intergenic	Intergenic	-57171	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
67834	chr14	73890601	73891430	+	0	NA	intron (NM_001242924, intron 1 of 13)	AluSp|SINE|Alu	4156	NM_001242927	57862		NM_021188	ENSG00000119725	ZNF410	APA-1|APA1	zinc finger protein 410	protein-coding
97570	chr17	44091151	44091680	+	0	NA	exon (NM_001015053, exon 11 of 27)	exon (NM_001015053, exon 11 of 27)	20504	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
185645	chr5	131539451	131539550	+	0	NA	intron (NM_016340, intron 6 of 27)	Charlie13a|DNA|hAT-Charlie	95729	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
57228	chr12	121531871	121532350	+	0	NA	intron (NM_001005366, intron 8 of 22)	AluSz6|SINE|Alu	48136	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
46244	chr11	124725351	124725650	+	0	NA	Intergenic	Intergenic	-14442	NM_006176	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
91182	chr17	3863321	3864200	+	0	NA	intron (NM_032294, intron 15 of 15)	intron (NM_032294, intron 15 of 15)	-17514	NM_001114118	55421		NM_018553	ENSG00000074356	NCBP3	C17orf85|ELG|HSA277841	nuclear cap binding subunit 3	protein-coding
92586	chr17	9241301	9241830	+	0	NA	3' UTR (NM_004822, exon 7 of 7)	3' UTR (NM_004822, exon 7 of 7)	-62447	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
213949	chr7	142711471	142712430	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-37522	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
59355	chr13	24617921	24619380	+	0	NA	Intergenic	MIRb|SINE|MIR	38442	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
26321	chr10	15100101	15100550	+	0	NA	intron (NM_001265601, intron 1 of 1)	intron (NM_001265601, intron 1 of 1)	2970	NM_001097590	10557		NM_006414	ENSG00000152464	RPP38	-	ribonuclease P/MRP subunit p38	protein-coding
95015	chr17	32394071	32394630	+	0	NA	Intergenic	AluSp|SINE|Alu	44193	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
210276	chr7	99415301	99415830	+	0	NA	intron (NM_001370410, intron 3 of 5)	LTR13|LTR|ERVK	6393	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
222485	chr8	140393751	140394380	+	0	NA	intron (NR_164662, intron 6 of 22)	intron (NR_164662, intron 6 of 22)	63679	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
107726	chr18	49898451	49898750	+	0	NA	intron (NM_001080467, intron 21 of 39)	L4_A_Mam|LINE|RTE-X	84577	NR_117096	103091864		NR_117096	ENSG00000267322	SNHG22	SCARNA17|SCARNA17HG	small nucleolar RNA host gene 22	ncRNA
82103	chr16	14563351	14563650	+	0	NA	intron (NM_002582, intron 18 of 23)	(TG)n|Simple_repeat|Simple_repeat	66760	NM_001134477	5073		NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding
202574	chr6	158684271	158685180	+	0	NA	intron (NM_001318745, intron 3 of 14)	intron (NM_001318745, intron 3 of 14)	21322	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
49313	chr12	21607071	21607230	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-2303	NM_021957	2998		NM_021957	ENSG00000111713	GYS2	-	glycogen synthase 2	protein-coding
20023	chr1	185307551	185307650	+	0	NA	exon (NM_006469, exon 6 of 15)	exon (NM_006469, exon 6 of 15)	9643	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
81135	chr16	4396921	4398050	+	0	NA	intron (NM_001351729, intron 6 of 27)	AluJb|SINE|Alu	18412	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
105562	chr18	36101	36330	+	0	NA	Intergenic	L1PA3|LINE|L1	13342	NM_001358689	260334		NM_001358689	ENSG00000173213	TUBB8B	TUBB8P12	tubulin beta 8B	protein-coding
235778	chrX	49078521	49079030	+	0	NA	intron (NM_007075, intron 2 of 11)	intron (NM_007075, intron 2 of 11)	1112	NM_001029896	11152		NM_007075	ENSG00000196998	WDR45	JM5|NBIA4|NBIA5|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
94896	chr17	31552621	31553080	+	0	NA	Intergenic	Intergenic	-7146	NR_029710	406968		NR_029710	ENSG00000207614	MIR193A	MIRN193|MIRN193A|mir-193a	microRNA 193a	ncRNA
87749	chr16	75237871	75238030	+	0	NA	intron (NM_001170720, intron 3 of 7)	intron (NM_001170720, intron 3 of 7)	710	NM_001170721	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
205251	chr7	8121371	8121530	+	0	NA	intron (NR_146928, intron 13 of 14)	L1MA3|LINE|L1	140717	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
133469	chr2	119823651	119823980	+	0	NA	intron (NM_002830, intron 2 of 26)	MLT1G|LTR|ERVL-MaLR	63893	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
186373	chr5	134923501	134924030	+	0	NA	intron (NM_032151, intron 2 of 3)	intron (NM_032151, intron 2 of 3)	18634	NM_032151	84105		NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
176609	chr4	99055201	99055400	+	0	NA	intron (NM_015143, intron 9 of 10)	AluSz|SINE|Alu	33488	NM_000671	128		NM_000671	ENSG00000197894	ADH5	ADH-3|ADHX|AMEDS|BMFS7|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding
203467	chr7	479501	479700	+	0	NA	Intergenic	Intergenic	40244	NM_002607	5154		NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
39183	chr11	57456951	57457700	+	0	NA	Intergenic	Intergenic	-3203	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
104346	chr17	80980121	80980380	+	0	NA	Intergenic	Intergenic	-9037	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
120095	chr19	42130851	42130950	+	0	NA	intron (NM_001247994, intron 1 of 13)	intron (NM_001247994, intron 1 of 13)	1546	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
3678	chr1	16496921	16498030	+	0	NA	Intergenic	AluSz|SINE|Alu	-4774	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
201745	chr6	149925451	149925750	+	0	NA	Intergenic	Intergenic	-2479	NR_130110	353091		NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
122393	chr19	49426151	49426750	+	0	NA	exon (NM_001385187, exon 3 of 5)	exon (NM_001385187, exon 3 of 5)	1062	NM_001195256	100507003		NM_001195256	ENSG00000261949	GFY	Goofy	golgi associated olfactory signaling regulator	protein-coding
14980	chr1	148037901	148039510	+	0	NA	TTS (NR_004426)	TTS (NR_004426)	211	NR_004426	26864		NR_004426	ENSG00000206585	RNVU1-7	RNU1-26P|RNU1-6|RNU1-6P|RNU1-9|RNU1-9P|RNVU1-9|vU1.7|vU1.9	RNA, variant U1 small nuclear 7	snRNA
194272	chr6	32616121	32616380	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-21156	NM_002122	3117		NM_002122	ENSG00000196735	HLA-DQA1	CELIAC1|DQ-A1|DQA1|HLA-DQA|HLA-DQA1*|HLA-DQB1	major histocompatibility complex, class II, DQ alpha 1	protein-coding
149908	chr21	36137471	36137830	+	0	NA	intron (NM_001236, intron 1 of 2)	MER5A|DNA|hAT-Charlie	2571	NM_001236	874		NM_001236	ENSG00000159231	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
72641	chr15	38490051	38490550	+	0	NA	3' UTR (NM_001306086, exon 15 of 15)	3' UTR (NM_001306086, exon 15 of 15)	36173	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
176959	chr4	103099301	103100330	+	0	NA	promoter-TSS (NM_020139)	promoter-TSS (NM_020139)	19	NM_020139	56898		NM_020139	ENSG00000164039	BDH2	DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308	3-hydroxybutyrate dehydrogenase 2	protein-coding
195116	chr6	35662201	35662400	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluJb|SINE|Alu	2489	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
41211	chr11	65659701	65660350	+	0	NA	intron (NM_001243984, intron 5 of 10)	MIR3|SINE|MIR	2891	NM_021975	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
35287	chr11	967401	967600	+	0	NA	intron (NR_144509, intron 2 of 20)	AluY|SINE|Alu	41630	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
45219	chr11	117874751	117876050	+	0	NA	intron (NM_001164837, intron 1 of 8)	intron (NM_001164837, intron 1 of 8)	1258	NM_022003	53826		NM_022003	ENSG00000137726	FXYD6	-	FXYD domain containing ion transport regulator 6	protein-coding
183384	chr5	77636801	77637000	+	0	NA	exon (NM_032109, exon 2 of 3)	exon (NM_032109, exon 2 of 3)	1813	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
159527	chr3	14429301	14429830	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	26959	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
102526	chr17	75816921	75817430	+	0	NA	intron (NM_001080419, intron 8 of 15)	intron (NM_001080419, intron 8 of 15)	27229	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
110224	chr19	1761051	1761480	+	0	NA	intron (NM_001080488, intron 1 of 1)	AluSq2|SINE|Alu	7759	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
207774	chr7	50197371	50197900	+	0	NA	Intergenic	Intergenic	101752	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
56643	chr12	118707571	118708090	+	0	NA	Intergenic	(TGGTGA)n|Simple_repeat|Simple_repeat	53849	NR_134998	105370014		NR_134998	ENSG00000256750	LINC02423	-	long intergenic non-protein coding RNA 2423	ncRNA
230846	chr9	129104651	129104980	+	0	NA	intron (NM_001346549, intron 2 of 13)	AluY|SINE|Alu	5978	NM_001346547	1384		NM_000755	ENSG00000095321	CRAT	CAT|CAT1|NBIA8	carnitine O-acetyltransferase	protein-coding
129883	chr2	73114301	73114680	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-1542	NM_015470	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
149658	chr21	33556221	33557000	+	0	NA	intron (NM_032195, intron 3 of 6)	AluSx3|SINE|Alu	5948	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
138645	chr2	210503001	210503300	+	0	NA	intron (NM_001122633, intron 1 of 38)	intron (NM_001122633, intron 1 of 38)	-16568	NM_001369256	1373		NM_001875	ENSG00000021826	CPS1	CPSASE1|GATD6|PHN	carbamoyl-phosphate synthase 1	protein-coding
146145	chr20	48684271	48684630	+	0	NA	intron (NM_020820, intron 10 of 39)	intron (NM_020820, intron 10 of 39)	143549	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
131448	chr2	96324451	96325490	+	0	NA	promoter-TSS (NM_001163523)	promoter-TSS (NM_001163523)	-347	NM_001008949	150771		NM_178495	ENSG00000198885	ITPRIPL1	D1B|KIAA1754L	ITPRIP like 1	protein-coding
119421	chr19	40281821	40283050	+	0	NA	TTS (NR_030371)	TTS (NR_030371)	206	NR_030371	693226		NR_030371	ENSG00000207631	MIR641	MIRN641|hsa-mir-641|mir-641	microRNA 641	ncRNA
173892	chr4	24581701	24581900	+	0	NA	intron (NM_001358, intron 1 of 13)	intron (NM_001358, intron 1 of 13)	2754	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
74474	chr15	59801401	59801800	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-112280	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
68736	chr14	90969751	90970330	+	0	NA	intron (NM_001322238, intron 1 of 14)	intron (NM_001322238, intron 1 of 14)	90084	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
139473	chr2	224023921	224024580	+	0	NA	intron (NM_006216, intron 1 of 8)	intron (NM_006216, intron 1 of 8)	7228	NR_073116	5270		NM_006216	ENSG00000135919	SERPINE2	GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI	serpin family E member 2	protein-coding
81514	chr16	8997071	8997230	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-33244	NM_003470	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
147755	chr20	62419071	62419430	+	0	NA	intron (NM_080833, intron 2 of 13)	intron (NM_080833, intron 2 of 13)	8289	NM_080833	140893		NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
60322	chr13	40661321	40661700	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSx1|SINE|Alu	5131	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
212245	chr7	121390551	121391080	+	0	NA	intron (NM_001040020, intron 1 of 9)	intron (NM_001040020, intron 1 of 9)	5493	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
210027	chr7	94008601	94008800	+	0	NA	Intergenic	Intergenic	-4345	NM_001317739	10282		NM_005868	ENSG00000105829	BET1	HBET1|MDRP	Bet1 golgi vesicular membrane trafficking protein	protein-coding
100908	chr17	64448621	64449130	+	0	NA	promoter-TSS (NM_001291316)	promoter-TSS (NM_001291316)	-240	NM_001085423	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
143061	chr20	21510101	21511080	+	0	NA	TTS (NM_002509)	TTS (NM_002509)	3474	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
142632	chr20	5653271	5653630	+	0	NA	Intergenic	Intergenic	-42444	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
54767	chr12	94134001	94134600	+	0	NA	Intergenic	Intergenic	-14277	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
111179	chr19	3368101	3369150	+	0	NA	intron (NM_001245002, intron 1 of 10)	intron (NM_001245002, intron 1 of 10)	2042	NM_001245004	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
10080	chr1	58812701	58813900	+	0	NA	intron (NR_108106, intron 1 of 1)	MIRc|SINE|MIR	28149	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
2077	chr1	7936821	7937480	+	0	NA	intron (NM_001561, intron 5 of 7)	intron (NM_001561, intron 5 of 7)	3689	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
23430	chr1	228405751	228407430	+	0	NA	5' UTR (NM_145214, exon 1 of 6)	5' UTR (NM_145214, exon 1 of 6)	245	NM_145214	81559		NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
127222	chr2	38601401	38603830	+	0	NA	exon (NM_138394, exon 1 of 13)	exon (NM_138394, exon 1 of 13)	313	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
79870	chr16	1525551	1526600	+	0	NA	exon (NM_014714, exon 21 of 31)	exon (NM_014714, exon 21 of 31)	-2603	NM_001256541	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
153060	chr22	23287171	23287750	+	0	NA	intron (NM_021574, intron 11 of 21)	intron (NM_021574, intron 11 of 21)	24693	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
207673	chr7	45108621	45109080	+	0	NA	exon (NM_001261834, exon 2 of 11)	exon (NM_001261834, exon 2 of 11)	-2751	NR_002990	677795		NR_002990	ENSG00000200656	SNORA5B	ACA5b	small nucleolar RNA, H/ACA box 5B	snoRNA
183230	chr5	76341771	76342380	+	0	NA	intron (NM_001297716, intron 12 of 12)	intron (NM_001297716, intron 12 of 12)	-61210	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
39728	chr11	61784451	61784750	+	0	NA	intron (NM_013279, intron 24 of 25)	intron (NM_013279, intron 24 of 25)	7961	NR_030342	693196		NR_030342	ENSG00000284108	MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
229515	chr9	122463821	122464230	+	0	NA	Intergenic	L1PB1|LINE|L1	13901	NM_001004451	347168		NM_001004451	ENSG00000136834	OR1J1	OR9-18|hg32	olfactory receptor family 1 subfamily J member 1	protein-coding
184750	chr5	109833051	109833430	+	0	NA	intron (NM_002372, intron 16 of 21)	SVA_B|Retroposon|SVA	-49942	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
100658	chr17	63705171	63705800	+	0	NA	intron (NM_001165970, intron 8 of 10)	L2c|LINE|L2	5147	NR_046273	729683		NR_046273		LOC729683	-	uncharacterized LOC729683	ncRNA
13016	chr1	111195701	111196180	+	0	NA	exon (NM_024901, exon 6 of 12)	exon (NM_024901, exon 6 of 12)	4706	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
127197	chr2	38545521	38545780	+	0	NA	Intergenic	Intergenic	-29910	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
3910	chr1	17260021	17260100	+	0	NA	intron (NM_016233, intron 2 of 15).2	intron (NM_016233, intron 2 of 15).2	10962	NM_016233	51702		NM_016233	ENSG00000142619	PADI3	PAD3|PDI3|UHS1	peptidyl arginine deiminase 3	protein-coding
115356	chr19	15223101	15224330	+	0	NA	Intergenic	CpG	8733	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
197290	chr6	71248401	71248630	+	0	NA	Intergenic	Intergenic	-40296	NM_001324266	79627		NM_024576	ENSG00000119900	OGFRL1	dJ331H24.1	opioid growth factor receptor like 1	protein-coding
49235	chr12	19354251	19354350	+	0	NA	intron (NM_001256470, intron 26 of 31)	AluY|SINE|Alu	-85192	NM_153207	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
88402	chr16	84646501	84646900	+	0	NA	Intergenic	Intergenic	-1811	NM_001303451	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
82078	chr16	14196471	14196830	+	0	NA	intron (NM_001365415, intron 1 of 7)	intron (NM_001365415, intron 1 of 7)	9964	NM_001365416	57496		NM_014048	ENSG00000186260	MRTFB	MKL2|MRTF-B|NPD001	myocardin related transcription factor B	protein-coding
210249	chr7	99389501	99389700	+	0	NA	intron (NM_005720, intron 4 of 9)	MIR3|SINE|MIR	14870	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
100371	chr17	60113371	60113530	+	0	NA	Intergenic	Intergenic	-10531	NR_027408	653653		NR_027408	ENSG00000293358	LOC653653	-	adaptor related protein complex 1 subunit sigma 2 pseudogene	pseudo
36703	chr11	8910401	8912100	+	0	NA	promoter-TSS (NM_005418)	promoter-TSS (NM_005418)	61	NM_020642	56672		NM_020642	ENSG00000166452	AKIP1	BCA3|C11orf17	A-kinase interacting protein 1	protein-coding
175287	chr4	67550071	67550530	+	0	NA	Intergenic	AluY|SINE|Alu	-4797	NM_001362481	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
222992	chr8	143265221	143266000	+	0	NA	Intergenic	Intergenic	-1835	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
208991	chr7	74235521	74235880	+	0	NA	intron (NM_002914, intron 8 of 9)	intron (NM_002914, intron 8 of 9)	18699	NM_181471	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
84854	chr16	31138571	31139150	+	0	NA	TTS (NM_001258291)	TTS (NM_001258291)	-3133	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
154550	chr22	36195751	36195850	+	0	NA	intron (NM_145660, intron 3 of 4)	(CA)n|Simple_repeat|Simple_repeat	9033	NM_030643	80832		NM_030643	ENSG00000100336	APOL4	APOL-IV|APOLIV	apolipoprotein L4	protein-coding
125036	chr2	9601151	9601700	+	0	NA	intron (NM_006826, intron 2 of 5)	AluSq|SINE|Alu	29572	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
176731	chr4	101336451	101336750	+	0	NA	intron (NM_001130692, intron 1 of 11)	AluSz|SINE|Alu	-6186	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
144551	chr20	35730871	35731380	+	0	NA	intron (NM_184234, intron 4 of 16)	intron (NM_184234, intron 4 of 16)	11135	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
26091	chr10	13206601	13206800	+	0	NA	intron (NM_182751, intron 18 of 19)	intron (NM_182751, intron 18 of 19)	-10569	NR_104088	101954278		NR_104088	ENSG00000202337	RNU6-8	U6-8	RNA, U6 small nuclear 8	snRNA
44638	chr11	110192371	110193030	+	0	NA	intron (NM_001260493, intron 15 of 15)	L1PA16|LINE|L1	99308	NM_033390	85463		NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
213976	chr7	142800971	142802300	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	30665	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
195733	chr6	39229151	39230330	+	0	NA	promoter-TSS (NM_003740)	promoter-TSS (NM_003740)	-265	NM_003740	8645		NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding
234871	chrX	26319951	26320050	+	0	NA	Intergenic	L1HS|LINE|L1	103831	NM_001271752	347541		NM_001271752	ENSG00000188408	MAGEB5	CT3.3|MAGE-B5	MAGE family member B5	protein-coding
4026	chr1	18940351	18940650	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	16176	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
78996	chr15	101961021	101962230	+	0	NA	non-coding (NR_003659, exon 1 of 11)	non-coding (NR_003659, exon 1 of 11)	812	NR_003659	374666		NM_199163		WASH3P	FAM39DP	WASP family homolog 3, pseudogene	pseudo
89450	chr16	89002051	89002190	+	0	NA	Intergenic	Intergenic	-24913	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
75802	chr15	68875671	68876050	+	0	NA	Intergenic	Intergenic	-54665	NM_145658	246777		NM_145658	ENSG00000258484	SPESP1	ESP|SP-ESP	sperm equatorial segment protein 1	protein-coding
214823	chr7	151242121	151242380	+	0	NA	intron (NM_001003802, intron 6 of 13)	intron (NM_001003802, intron 6 of 13)	3829	NR_030407	768213		NR_030407	ENSG00000284191	MIR671	MIRN671|hsa-mir-671|mir-671	microRNA 671	ncRNA
162943	chr3	49479371	49479880	+	0	NA	intron (NM_001177640, intron 2 of 3)	intron (NM_001177640, intron 2 of 3)	9358	NM_004393	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
203838	chr7	1433501	1433800	+	0	NA	TTS (NM_182924)	TTS (NM_182924)	25820	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
15610	chr1	150610601	150612350	+	0	NA	Intergenic	Intergenic	17658	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
20393	chr1	198172301	198172700	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	15502	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
224481	chr9	16258821	16259080	+	0	NA	intron (NM_001364979, intron 1 of 3)	X1_LINE|LINE|CR1	17363	NM_001364979	100129385		NM_001271829	ENSG00000205549	LINC03041	C9orf92|Em:AL513424.1	long intergenic non-protein coding RNA 3041	ncRNA
189727	chr5	176540671	176542700	+	0	NA	promoter-TSS (NM_001171976)	promoter-TSS (NM_001171976)	-826	NM_001171976	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
77335	chr15	82524801	82525200	+	0	NA	intron (NR_111962, intron 7 of 8)	intron (NR_111962, intron 7 of 8)	5410	NR_111962	642402		NR_111962		GOLGA6L17P	GOLGA6L21P	golgin A6 family like 17, pseudogene	pseudo
122099	chr19	48751651	48752100	+	0	NA	intron (NM_001329877, intron 4 of 4)	AluSp|SINE|Alu	766	NM_001384359	2523		NM_000148	ENSG00000174951	FUT1	H|HH|HSC	fucosyltransferase 1 (H blood group)	protein-coding
21208	chr1	204077101	204077500	+	0	NA	intron (NM_005686, intron 1 of 13)	L2a|LINE|L2	4185	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
80415	chr16	2617351	2617980	+	0	NA	intron (NR_015441, intron 3 of 3)	intron (NR_015441, intron 3 of 3)	14281	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
183017	chr5	72955621	72956880	+	0	NA	intron (NM_138782, intron 1 of 25)	CpG	209	NM_001146032	115548		NM_138782	ENSG00000157107	FCHO2	-	FCH and mu domain containing endocytic adaptor 2	protein-coding
149371	chr21	29436201	29436800	+	0	NA	Intergenic	Intergenic	-59547	NR_146594	54147		NR_146594	ENSG00000234293	BACH1-IT3	C21orf8|NCRNA00097	BACH1 intronic transcript 3	ncRNA
34772	chr11	204801	205200	+	0	NA	3' UTR (NM_001098787, exon 4 of 4)	3' UTR (NM_001098787, exon 4 of 4)	2422	NM_001098787	51272		NM_016465	ENSG00000177951	BET1L	BET1L1|GOLIM3|GS15|HSPC197	Bet1 golgi vesicular membrane trafficking protein like	protein-coding
217125	chr8	25198551	25199450	+	0	NA	intron (NM_024940, intron 1 of 51)	intron (NM_024940, intron 1 of 51)	14311	NM_024940	80005		NM_024940	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
161416	chr3	41244551	41245250	+	0	NA	Intergenic	Intergenic	45395	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
186079	chr5	134099101	134099500	+	0	NA	Intergenic	Intergenic	-15381	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
159845	chr3	16510851	16511180	+	0	NA	intron (NM_015150, intron 1 of 9)	L1ME2z|LINE|L1	2684	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
159370	chr3	13343401	13344350	+	0	NA	intron (NM_024923, intron 20 of 39)	intron (NM_024923, intron 20 of 39)	-60618	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
6014	chr1	27049751	27049850	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-36950	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
122142	chr19	48863601	48864530	+	0	NA	intron (NM_020904, intron 3 of 19)	MER5A|DNA|hAT-Charlie	4552	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
108141	chr18	62525651	62525750	+	0	NA	intron (NM_017742, intron 1 of 13)	intron (NM_017742, intron 1 of 13)	2675	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
168486	chr3	143235571	143236130	+	0	NA	Intergenic	Intergenic	-106396	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
126635	chr2	28814671	28815200	+	0	NA	intron (NM_182756, intron 2 of 7)	hAT-N1_Mam|DNA|hAT-Tip100?	-1062	NM_001008779	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
195634	chr6	37851971	37852130	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	32323	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
227947	chr9	94655721	94656500	+	0	NA	Intergenic	MIR3|SINE|MIR	-15847	NM_001127628	2203		NM_000507	ENSG00000165140	FBP1	FBP	fructose-bisphosphatase 1	protein-coding
85950	chr16	57243451	57243780	+	0	NA	Intergenic	AluSx|SINE|Alu	-1644	NM_012106	23568		NM_012106	ENSG00000102931	ARL2BP	BART|BART1|RP66	ADP ribosylation factor like GTPase 2 binding protein	protein-coding
142783	chr20	13220801	13221070	+	0	NA	promoter-TSS (NM_080826)	promoter-TSS (NM_080826)	-339	NM_080826	140862		NM_080826	ENSG00000101230	ISM1	C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1	isthmin 1	protein-coding
105098	chr17	82149971	82150330	+	0	NA	intron (NM_001367828, intron 13 of 16)	intron (NM_001367828, intron 13 of 16)	-51914	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
116336	chr19	17845371	17845530	+	0	NA	intron (NM_000215, intron 1 of 23)	AluSz6|SINE|Alu	2532	NM_000215	3718		NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
115864	chr19	16556651	16556950	+	0	NA	intron (NM_024881, intron 4 of 5)	intron (NM_024881, intron 4 of 5)	-14363	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
121824	chr19	47949871	47950480	+	0	NA	promoter-TSS (NR_024221)	promoter-TSS (NR_024221)	-121	NR_024221	100170226		NR_024221		SNAR-C3	-	small NF90 (ILF3) associated RNA C3	snRNA
136161	chr2	174343521	174344230	+	0	NA	Intergenic	CpG	8921	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
234694	chrX	20414101	20414380	+	0	NA	Intergenic	MIRc|SINE|MIR	-147331	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
140100	chr2	231462321	231462950	+	0	NA	intron (NM_005381, intron 2 of 13)	intron (NM_005381, intron 2 of 13)	1849	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
148661	chr21	6118171	6118730	+	0	NA	intron (NM_173354, intron 9 of 13).2	intron (NM_173354, intron 9 of 13).2	7319	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
17073	chr1	156118371	156119100	+	0	NA	intron (NM_170707, intron 1 of 11)	intron (NM_170707, intron 1 of 11)	4024	NM_005572	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
158589	chr3	4748521	4749180	+	0	NA	TTS (NR_004428)	TTS (NR_004428)	2740	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
133045	chr2	112168521	112168780	+	0	NA	intron (NM_153214, intron 3 of 7)	intron (NM_153214, intron 3 of 7)	30265	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
22851	chr1	225464971	225465330	+	0	NA	Intergenic	Intergenic	-36295	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
23331	chr1	228101321	228102600	+	0	NA	intron (NR_130975, intron 6 of 8)	intron (NR_130975, intron 6 of 8)	1365	NR_130975	79169		NM_024319	ENSG00000143793	C1orf35	MMTAG2	chromosome 1 open reading frame 35	protein-coding
53592	chr12	67992371	67992530	+	0	NA	intron (NR_104124, intron 1 of 4)	L1ME3Cz|LINE|L1	3005	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
126056	chr2	25589771	25590130	+	0	NA	intron (NM_001320935, intron 4 of 17)	MER52A|LTR|ERV1	60272	NM_001256308	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
212872	chr7	130867871	130868500	+	0	NA	Intergenic	Intergenic	8625	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
8139	chr1	39279201	39279800	+	0	NA	intron (NM_012090, intron 5 of 92)	intron (NM_012090, intron 5 of 92)	-129573	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
175751	chr4	77753521	77753780	+	0	NA	intron (NM_144571, intron 5 of 11)	AluSz|SINE|Alu	65414	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
20744	chr1	200973401	200973930	+	0	NA	3' UTR (NM_001252100, exon 35 of 35)	3' UTR (NM_001252100, exon 35 of 35)	44721	NR_147176	647215		NR_147176	ENSG00000293444	MROH3P	C1orf81	maestro heat like repeat family member 3, pseudogene	pseudo
10637	chr1	70209671	70210030	+	0	NA	intron (NM_001350606, intron 1 of 12)	AluJb|SINE|Alu	4154	NM_001190987	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
12270	chr1	100471221	100471480	+	0	NA	intron (NM_001319210, intron 10 of 16)	L1ME2|LINE|L1	-66789	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
223896	chr9	304401	305000	+	0	NA	exon (NM_001190458, exon 4 of 46)	exon (NM_001190458, exon 4 of 46)	31652	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
13964	chr1	120404401	120405000	+	0	NA	Intergenic	Intergenic	-10327	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
127320	chr2	38908201	38908480	+	0	NA	intron (NM_001145451, intron 2 of 17)	intron (NM_001145451, intron 2 of 17)	18465	NM_001145451	100271715		NM_001145451	ENSG00000214694	ARHGEF33	-	Rho guanine nucleotide exchange factor 33	protein-coding
196753	chr6	45429771	45430130	+	0	NA	intron (NM_001278478, intron 1 of 5)	AluSx|SINE|Alu	7675	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
50150	chr12	45745471	45746380	+	0	NA	intron (NM_152641, intron 3 of 20)	intron (NM_152641, intron 3 of 20)	16216	NM_001347839	196528		NM_152641	ENSG00000189079	ARID2	BAF200|CSS6|SMARCF3|ZIPZAP|p200	AT-rich interaction domain 2	protein-coding
199550	chr6	118860921	118861180	+	0	NA	intron (NM_001378357, intron 8 of 13)	MER52A|LTR|ERV1	-33102	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
183332	chr5	76727471	76727630	+	0	NA	intron (NM_001992, intron 1 of 1)	intron (NM_001992, intron 1 of 1)	11424	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
7444	chr1	33007251	33007500	+	0	NA	TTS (NM_013411)	TTS (NM_013411)	29508	NM_001625	204		NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
150101	chr21	37442871	37443230	+	0	NA	intron (NM_101395, intron 3 of 12)	AluJo|SINE|Alu	22751	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
158660	chr3	5037801	5038400	+	0	NA	Intergenic	Charlie15a|DNA|hAT-Charlie	-58139	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
16483	chr1	154746371	154746530	+	0	NA	intron (NM_001204087, intron 3 of 8)	intron (NM_001204087, intron 3 of 8)	113426	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
164938	chr3	71224071	71224230	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	20927	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
22158	chr1	212186601	212187200	+	0	NA	Intergenic	Intergenic	47836	NR_125983	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
197143	chr6	59532751	59533050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1571454	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
172968	chr4	3880551	3880950	+	0	NA	Intergenic	Intergenic	74678	NR_130742	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
111599	chr19	4094871	4095030	+	0	NA	intron (NM_030662, intron 9 of 10)	intron (NM_030662, intron 9 of 10)	-28051	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
151519	chr21	46431751	46432480	+	0	NA	exon (NM_006031, exon 38 of 47)	exon (NM_006031, exon 38 of 47)	-26776	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
17286	chr1	156431951	156432330	+	0	NA	Intergenic	Intergenic	-2592	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
89896	chr16	89686301	89687880	+	0	NA	intron (NR_027703, intron 1 of 11)	CpG	401	NM_001098533	8558		NM_003674	ENSG00000185324	CDK10	ALSAS|PISSLRE	cyclin dependent kinase 10	protein-coding
180803	chr5	32310501	32310700	+	0	NA	intron (NM_001294344, intron 1 of 13)	L1MA3|LINE|L1	2339	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
209606	chr7	77645021	77645280	+	0	NA	Intergenic	L2c|LINE|L2	51115	NR_134254	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
45257	chr11	117997221	117997680	+	0	NA	intron (NM_001558, intron 6 of 6)	MIR|SINE|MIR	11056	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
109100	chr18	79971501	79972150	+	0	NA	non-coding (NR_131177, exon 2 of 2)	non-coding (NR_131177, exon 2 of 2)	7182	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
59115	chr13	21296951	21297250	+	0	NA	intron (NM_001365454, intron 1 of 4)	MLT1C|LTR|ERVL-MaLR	991	NM_001365454								
79785	chr16	1383021	1383330	+	0	NA	intron (NM_001372107, intron 10 of 14)	AluSq4|SINE|Alu	-3523	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
53261	chr12	62934621	62935200	+	0	NA	5' UTR (NM_020700, exon 1 of 10)	5' UTR (NM_020700, exon 1 of 10)	240	NM_020700	57460		NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent 1H	protein-coding
234793	chrX	24014651	24015180	+	0	NA	intron (NM_030624, intron 2 of 3)	MLT1O|LTR|ERVL-MaLR	12271	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
125905	chr2	24826101	24826700	+	0	NA	intron (NM_001320613, intron 15 of 21)	intron (NM_001320613, intron 15 of 21)	32975	NM_001199803	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
33236	chr10	114173611	114175150	+	0	NA	promoter-TSS (NR_135815)	promoter-TSS (NR_135815)	-160	NR_135815	55088		NM_018017	ENSG00000165813	CCDC186	C10orf118|CCCP-1|CCCP1|golgin104	coiled-coil domain containing 186	protein-coding
223437	chr8	143965821	143967400	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	6919	NM_201378	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
196904	chr6	52335521	52335780	+	0	NA	Intergenic	Intergenic	-26501	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
194845	chr6	34424671	34424830	+	0	NA	exon (NM_001014, exon 3 of 6)	exon (NM_001014, exon 3 of 6)	1319	NM_001204091	6204		NM_001014	ENSG00000124614	RPS10	DBA9|S10|eS10	ribosomal protein S10	protein-coding
61712	chr13	74095401	74095600	+	0	NA	intron (NM_007249, intron 1 of 7)	AluJo|SINE|Alu	38429	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
142684	chr20	6321221	6321480	+	0	NA	Intergenic	L1PA2|LINE|L1	-105382	NR_109953	101929244		NR_109953	ENSG00000229876	CASC20	-	cancer susceptibility 20	ncRNA
14145	chr1	121052101	121052500	+	0	NA	promoter-TSS (NR_135813)	promoter-TSS (NR_135813)	-133	NR_135813	101929798		NR_135813	ENSG00000290904	PDE4DIPP4	CH17-118O6.3	PDE4DIP pseudogene 4	pseudo
194370	chr6	32976121	32976930	+	0	NA	intron (NM_001199455, intron 5 of 12).4	intron (NM_001199455, intron 5 of 12).4	3441	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
209956	chr7	92664221	92664880	+	0	NA	intron (NM_001145306, intron 5 of 7)	intron (NM_001145306, intron 5 of 7)	-74160	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
49153	chr12	14949721	14950000	+	0	NA	promoter-TSS (NR_135637)	promoter-TSS (NR_135637)	-964	NR_135637	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
157152	chr22	42859921	42860530	+	0	NA	Intergenic	Intergenic	-2952	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
125655	chr2	20012171	20013130	+	0	NA	promoter-TSS (NM_002381)	promoter-TSS (NM_002381)	18	NM_002381	4148		NM_002381	ENSG00000132031	MATN3	DIPOA|EDM5|HOA|OADIP|OS2|SEMDBCD	matrilin 3	protein-coding
196654	chr6	44306071	44306580	+	0	NA	exon (NM_020745, exon 9 of 22)	exon (NM_020745, exon 9 of 22)	7022	NM_020745	57505		NM_020745	ENSG00000124608	AARS2	AARSL|COXPD8|LKENP|MT-ALARS|MTALARS	alanyl-tRNA synthetase 2, mitochondrial	protein-coding
4675	chr1	22619401	22619600	+	0	NA	Intergenic	Intergenic	13866	NR_106742	102466615		NR_106742	ENSG00000276835	MIR6127	hsa-mir-6127	microRNA 6127	ncRNA
28767	chr10	62041901	62042300	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-7257	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
156742	chr22	41824071	41825300	+	0	NA	intron (NM_024821, intron 6 of 6)	AluSx1|SINE|Alu	-8420	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
91558	chr17	5048801	5050000	+	0	NA	Intergenic	AluJo|SINE|Alu	-13968	NM_001104577	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
137406	chr2	196262051	196262350	+	0	NA	intron (NR_110226, intron 2 of 2)	AluJr4|SINE|Alu	2176	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
148805	chr21	8244821	8245800	+	0	NA	intron (NR_003287, intron 1 of 2)	intron (NR_003287, intron 1 of 2)	-4195	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
174677	chr4	41881221	41881950	+	0	NA	intron (NR_104143, intron 1 of 1)	CpG	1026	NR_104143	101927074		NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA
52577	chr12	56170901	56171100	+	0	NA	intron (NM_003075, intron 21 of 27)	AluSg|SINE|Alu	12641	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
188617	chr5	157201671	157202330	+	0	NA	intron (NM_005546, intron 1 of 16)	L1PA15|LINE|L1	21160	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
15884	chr1	151510671	151512650	+	0	NA	intron (NM_020770, intron 1 of 20)	intron (NM_020770, intron 1 of 20)	273	NM_020770	57530		NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
158948	chr3	10169201	10169400	+	0	NA	intron (NM_001570, intron 1 of 12)	MER11A|LTR|ERVK	4381	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
84039	chr16	29569071	29569980	+	0	NA	intron (NR_135305, intron 1 of 13)	intron (NR_135305, intron 1 of 13)	25567	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
13328	chr1	113782501	113782700	+	0	NA	intron (NM_018364, intron 2 of 6)	L1M2|LINE|L1	-22712	NM_001323042	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
172640	chr4	2541571	2541730	+	0	NA	intron (NM_001366318, intron 1 of 20)	AluSc|SINE|Alu	5003	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
139860	chr2	230592701	230593000	+	0	NA	Intergenic	Intergenic	107679	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
60174	chr13	40208321	40208980	+	0	NA	intron (NR_033877, intron 1 of 5)	(GCAAGCA)n|Simple_repeat|Simple_repeat	11852	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
186542	chr5	138449271	138449430	+	0	NA	Intergenic	Intergenic	10293	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
194527	chr6	33303571	33303930	+	0	NA	3' UTR (NM_172208, exon 7 of 7).4	3' UTR (NM_172208, exon 7 of 7).4	-4362	NM_001243738	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
94111	chr17	28004351	28004680	+	0	NA	Intergenic	L2-3_Crp|LINE|L2	-12808	NR_146896	105371708		NR_146896	ENSG00000260019	LINC01992	-	long intergenic non-protein coding RNA 1992	ncRNA
92392	chr17	8290971	8291130	+	0	NA	TTS (NM_001330127)	TTS (NM_001330127)	2380	NM_001330127	29098		NM_016492	ENSG00000108961	RANGRF	HSPC165|HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
184007	chr5	90932171	90932400	+	0	NA	intron (NR_003149, intron 83 of 89)	intron (NR_003149, intron 83 of 89)	373488	NM_032119	84059		NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
175939	chr4	80460151	80460330	+	0	NA	intron (NM_001206997, intron 2 of 6)	LTR49|LTR|ERV1	124510	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
48277	chr12	8699671	8699830	+	0	NA	intron (NM_001352269, intron 1 of 5)	intron (NM_001352269, intron 1 of 5)	1759	NR_147946	57494		NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding
106665	chr18	23131721	23132200	+	0	NA	Intergenic	MIRb|SINE|MIR	-2604	NR_023359	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
221849	chr8	128271651	128271950	+	0	NA	Intergenic	Intergenic	121684	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
32291	chr10	102131101	102131650	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1619	NM_001288727	23082		NM_015062	ENSG00000148840	PPRC1	PRC	PPARG related coactivator 1	protein-coding
27700	chr10	33143301	33144100	+	0	NA	Intergenic	Intergenic	-26893	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
181687	chr5	50565871	50566380	+	0	NA	Intergenic	L2|LINE|L2	-99806	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
159272	chr3	12959821	12960280	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	7680	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
192347	chr6	24494571	24495630	+	0	NA	exon (NM_001368954, exon 1 of 9)	exon (NM_001368954, exon 1 of 9)	131	NM_001368954	7915		NM_001080	ENSG00000112294	ALDH5A1	SSADH|SSDH	aldehyde dehydrogenase 5 family member A1	protein-coding
113546	chr19	10227471	10228080	+	0	NA	intron (NM_004230, intron 1 of 1)	intron (NM_004230, intron 1 of 1)	-2638	NR_036206	100422925		NR_036206	ENSG00000264266	MIR4322	-	microRNA 4322	ncRNA
93668	chr17	19230801	19231750	+	0	NA	Intergenic	Intergenic	-6102	NM_014964	22905		NM_014964	ENSG00000072134	EPN2	EHB21	epsin 2	protein-coding
94818	chr17	31318071	31318730	+	0	NA	exon (NM_014210, exon 2 of 2)	exon (NM_014210, exon 2 of 2)	3222	NM_014210	2123		NM_014210	ENSG00000126860	EVI2A	EVDA|EVI-2A|EVI2	ecotropic viral integration site 2A	protein-coding
42679	chr11	72597571	72597730	+	0	NA	intron (NM_001243784, intron 4 of 30)	intron (NM_001243784, intron 4 of 30)	17480	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
64699	chr14	33950201	33951200	+	0	NA	exon (NM_001308103, exon 1 of 5)	exon (NM_001308103, exon 1 of 5)	374	NM_001308103	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
1640	chr1	3785671	3786030	+	0	NA	intron (NM_020710, intron 2 of 6)	intron (NM_020710, intron 2 of 6)	10648	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
56545	chr12	116879621	116880100	+	0	NA	intron (NR_073189, intron 1 of 4)	CpG	1581	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
192223	chr6	18261771	18262250	+	0	NA	intron (NM_003472, intron 2 of 10)	MSTB|LTR|ERVL-MaLR	2520	NM_003472	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
51838	chr12	53460471	53460630	+	0	NA	intron (NM_031989, intron 6 of 14)	intron (NM_031989, intron 6 of 14)	-3918	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
89351	chr16	88763951	88764250	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	21120	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
80939	chr16	3824921	3825700	+	0	NA	intron (NM_004380, intron 2 of 30)	intron (NM_004380, intron 2 of 30)	54810	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
81773	chr16	11514421	11515080	+	0	NA	intron (NM_001370704, intron 6 of 66)	intron (NM_001370704, intron 6 of 66)	12497	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
197392	chr6	73501471	73501850	+	0	NA	3' UTR (NM_001123226, exon 13 of 13)	3' UTR (NM_001123226, exon 13 of 13)	16778	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
93377	chr17	18249251	18249630	+	0	NA	intron (NM_001256265, intron 13 of 28).2	intron (NM_001256265, intron 13 of 28).2	9298	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
105066	chr17	82088001	82088280	+	0	NA	exon (NM_004104, exon 17 of 43)	exon (NM_004104, exon 17 of 43)	2000	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
106801	chr18	23935751	23936530	+	0	NA	intron (NM_198129, intron 67 of 74)	MIRb|SINE|MIR	-56747	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
181719	chr5	50676671	50676830	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	9336	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
61224	chr13	49620201	49620400	+	0	NA	Intergenic	Intergenic	-8207	NM_138450	115761		NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP ribosylation factor like GTPase 11	protein-coding
203225	chr6	168619521	168619780	+	0	NA	intron (NM_022138, intron 9 of 12)	intron (NM_022138, intron 9 of 12)	178466	NM_022138	64094		NM_022138	ENSG00000112562	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
76105	chr15	72502401	72502700	+	0	NA	intron (NM_005744, intron 1 of 13)	AluJb|SINE|Alu	28220	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
77042	chr15	78765401	78765800	+	0	NA	intron (NM_014272, intron 19 of 23)	intron (NM_014272, intron 19 of 23)	13563	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
211188	chr7	102600901	102601350	+	0	NA	intron (NM_001079877, intron 6 of 19)	AluSx1|SINE|Alu	15631	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
127577	chr2	42654421	42654680	+	0	NA	intron (NM_001282755, intron 7 of 17)	intron (NM_001282755, intron 7 of 17)	85918	NM_001330443	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
75362	chr15	65595971	65596160	+	0	NA	intron (NM_001207059, intron 5 of 10)	intron (NM_001207059, intron 5 of 10)	15066	NM_001207058	81556		NM_030800	ENSG00000138614	INTS14	C15orf44|VWA9	integrator complex subunit 14	protein-coding
164074	chr3	53921351	53921530	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-29581	NM_021237	58515		NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
191258	chr6	6001301	6001650	+	0	NA	intron (NM_001278710, intron 3 of 3)	intron (NM_001278710, intron 3 of 3)	2569	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
22396	chr1	219325071	219325230	+	0	NA	Intergenic	Intergenic	150181	NM_001300772	127018		NM_138794	ENSG00000143353	LYPLAL1	Q96AV0	lysophospholipase like 1	protein-coding
80288	chr16	2250721	2252900	+	0	NA	promoter-TSS (NM_001919)	promoter-TSS (NM_001919)	-223	NM_001919	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
55139	chr12	98609221	98609480	+	0	NA	Intergenic	MLT2D|LTR|ERVL	9715	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
88970	chr16	87861821	87862750	+	0	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	7222	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
51131	chr12	50110251	50110550	+	0	NA	3' UTR (NM_001257199, exon 8 of 8)	3' UTR (NM_001257199, exon 8 of 8)	-1836	NM_001257133	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
223868	chr9	177151	177600	+	0	NA	intron (NM_018491, intron 1 of 14)	L2c|LINE|L2	1681	NM_018491	55871		NM_018491	ENSG00000172785	ZNG1A	CBWD1|COBP	Zn regulated GTPase metalloprotein activator 1A	protein-coding
172996	chr4	4266821	4267380	+	0	NA	TTS (NM_001145725)	TTS (NM_001145725)	-18858	NM_032927	85013		NM_032927	ENSG00000132406	TMEM128	-	transmembrane protein 128	protein-coding
195682	chr6	38443671	38444030	+	0	NA	intron (NM_001172418, intron 5 of 10)	L2a|LINE|L2	-37746	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
218118	chr8	41516171	41516700	+	0	NA	Intergenic	Intergenic	-12826	NM_032336	84296		NM_032336	ENSG00000147536	GINS4	SLD5	GINS complex subunit 4	protein-coding
31166	chr10	91033851	91034550	+	0	NA	intron (NR_134319, intron 1 of 2)	intron (NR_134319, intron 1 of 2)	1034	NR_134319	105378430		NR_134319		LOC105378430	-	uncharacterized LOC105378430	ncRNA
76498	chr15	74933801	74934600	+	0	NA	intron (NM_004255, intron 1 of 4)	AluJr|SINE|Alu	3873	NM_004255	9377		NM_004255	ENSG00000178741	COX5A	COX|COX-VA|MC4DN20|VA	cytochrome c oxidase subunit 5A	protein-coding
167626	chr3	129588051	129588350	+	0	NA	intron (NM_015103, intron 2 of 35)	MIRb|SINE|MIR	18476	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
73756	chr15	45453701	45453900	+	0	NA	Intergenic	Intergenic	20750	NR_030599	100126311		NR_030599	ENSG00000284386	MIR147B	MIRN147B|mir-147b	microRNA 147b	ncRNA
62951	chr13	112276871	112277230	+	0	NA	Intergenic	Intergenic	-4050	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
77554	chr15	84761351	84762200	+	0	NA	intron (NM_014630, intron 1 of 10)	intron (NM_014630, intron 1 of 10)	13183	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
188789	chr5	157854301	157854500	+	0	NA	intron (NM_001195556, intron 1 of 11)	AluJo|SINE|Alu	4745	NM_014666	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
32562	chr10	103368401	103370050	+	0	NA	intron (NM_139052, intron 1 of 9)	AluSx1|SINE|Alu	1249	NM_006951	6877		NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
73083	chr15	40931951	40932950	+	0	NA	intron (NM_019074, intron 6 of 10)	intron (NM_019074, intron 6 of 10)	3110	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
236309	chrX	68511251	68511550	+	0	NA	intron (NM_001195214, intron 1 of 5)	intron (NM_001195214, intron 1 of 5)	12349	NM_173834	286451		NM_173834	ENSG00000181704	YIPF6	FinGER6|YIPFalpha3|Yip4	Yip1 domain family member 6	protein-coding
106307	chr18	12879271	12879430	+	0	NA	intron (NM_080422, intron 1 of 9)	L2|LINE|L2	4887	NM_002828	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
46006	chr11	121582021	121582730	+	0	NA	intron (NM_003105, intron 25 of 47)	intron (NM_003105, intron 25 of 47)	-100586	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
63287	chr13	113972501	113973030	+	0	NA	intron (NM_001365455, intron 1 of 6)	intron (NM_001365455, intron 1 of 6)	1311	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
135617	chr2	168177621	168177880	+	0	NA	intron (NM_013233, intron 2 of 17)	intron (NM_013233, intron 2 of 17)	69845	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
205619	chr7	22452301	22452500	+	0	NA	intron (NM_001164460, intron 4 of 4)	LTR50|LTR|ERVL	47788	NM_001382447	256227		NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
102022	chr17	74850571	74851280	+	0	NA	intron (NM_001278553, intron 4 of 11)	intron (NM_001278553, intron 4 of 11)	8959	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
9050	chr1	44809101	44812100	+	0	NA	exon (NM_001136537, exon 3 of 8)	exon (NM_001136537, exon 3 of 8)	2118	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
128021	chr2	47171421	47171680	+	0	NA	5' UTR (NM_001305626, exon 1 of 5)	5' UTR (NM_001305626, exon 1 of 5)	2657	NM_001305626	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
55337	chr12	103956151	103957770	+	0	NA	intron (NM_001135570, intron 1 of 2)	CpG	255	NM_001135570	728568		NM_001135570	ENSG00000204954	UQCC6	BR|BRAWNIN|C12orf73	ubiquinol-cytochrome c reductase complex assembly factor 6	protein-coding
117108	chr19	19200071	19200530	+	0	NA	intron (NM_134440, intron 8 of 8)	AluSg|SINE|Alu	3114	NM_176880	126382		NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
81253	chr16	4612551	4612850	+	0	NA	intron (NM_001330467, intron 1 of 2)	intron (NM_001330467, intron 1 of 2)	2188	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
42861	chr11	73270201	73270400	+	0	NA	intron (NM_176798, intron 1 of 3)	intron (NM_176798, intron 1 of 3)	406	NM_176798	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
179154	chr4	169720501	169720700	+	0	NA	3' UTR (NM_001243374, exon 12 of 12)	3' UTR (NM_001243374, exon 12 of 12)	37344	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
7719	chr1	36099651	36100650	+	0	NA	exon (NM_005202, exon 3 of 4)	exon (NM_005202, exon 3 of 4)	11258	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
169862	chr3	177201151	177202380	+	0	NA	Intergenic	Intergenic	-4283	NM_001374330	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
186797	chr5	139373651	139374150	+	0	NA	intron (NM_152685, intron 13 of 14)	intron (NM_152685, intron 13 of 14)	9397	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
73276	chr15	41851401	41851780	+	0	NA	intron (NM_016642, intron 63 of 67)	intron (NM_016642, intron 63 of 67)	12777	NM_001114633	100137049		NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2 group IVB	protein-coding
42168	chr11	67804251	67807150	+	0	NA	promoter-TSS (NR_024249)	promoter-TSS (NR_024249)	-364	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
93179	chr17	17800901	17801550	+	0	NA	intron (NM_030665, intron 3 of 5)	intron (NM_030665, intron 3 of 5)	12320	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
189138	chr5	171310221	171310480	+	0	NA	exon (NM_021025, exon 2 of 3)	exon (NM_021025, exon 2 of 3)	1102	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
122777	chr19	50252371	50252530	+	0	NA	intron (NM_024729, intron 14 of 40)	intron (NM_024729, intron 14 of 40)	48822	NM_024729	79784		NM_024729	ENSG00000105357	MYH14	DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	myosin heavy chain 14	protein-coding
42400	chr11	69010771	69011530	+	0	NA	intron (NM_001098515, intron 1 of 2)	(CGCC)n|Simple_repeat|Simple_repeat	-1204	NR_120541	101928200		NR_120541	ENSG00000256508	MRGPRF-AS1	-	MRGPRF antisense RNA 1	ncRNA
17801	chr1	159817171	159817330	+	0	NA	TTS (NM_001004310)	TTS (NM_001004310)	-9623	NM_001330741	56833		NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
17495	chr1	156730321	156730630	+	0	NA	intron (NM_015997, intron 1 of 7)	AluSx|SINE|Alu	-1709	NM_001370150	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
25267	chr10	6093971	6094130	+	0	NA	intron (NM_001145547, intron 1 of 11)	AluY|SINE|Alu	4704	NM_001145547	84991		NM_032905	ENSG00000134453	RBM17	SPF45	RNA binding motif protein 17	protein-coding
237122	chrX	106469501	106469700	+	0	NA	Intergenic	L1HS|LINE|L1	-142330	NM_001184782	55086		NM_018015	ENSG00000147231	RADX	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein-coding
219637	chr8	80168821	80169280	+	0	NA	intron (NR_105035, intron 1 of 6)	AluSz|SINE|Alu	2071	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
174858	chr4	48676001	48676200	+	0	NA	intron (NM_015030, intron 3 of 63)	LTR12C|LTR|ERV1	104179	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
99854	chr17	55576801	55577700	+	0	NA	Intergenic	L2a|LINE|L2	145614	NM_018286	55273		NM_018286	ENSG00000166292	TMEM100	-	transmembrane protein 100	protein-coding
182152	chr5	56481051	56482300	+	0	NA	promoter-TSS (NR_104664)	promoter-TSS (NR_104664)	94	NR_104664	102467147		NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
8102	chr1	39183501	39184800	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	99983	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
5146	chr1	24905301	24905700	+	0	NA	intron (NM_001031680, intron 5 of 5)	intron (NM_001031680, intron 5 of 5)	13916	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
202929	chr6	160455971	160456780	+	0	NA	Intergenic	Intergenic	54749	NR_028092	80350		NM_024492	ENSG00000290613	LPAL2	APOA2|APOAL|APOARGC|apo(a)rg-C	lipoprotein(a) like 2 (pseudogene)	pseudo
132927	chr2	111432421	111433450	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	62226	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
17460	chr1	156703921	156704430	+	0	NA	intron (NM_001878, intron 1 of 3)	intron (NM_001878, intron 1 of 3)	1408	NM_001878	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
104218	chr17	80614021	80614580	+	0	NA	intron (NM_020761, intron 1 of 33)	intron (NM_020761, intron 1 of 33)	69462	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
44282	chr11	102302771	102303530	+	0	NA	Intergenic	MSTB-int|LTR|ERVL-MaLR	-14334	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
160758	chr3	32578721	32578980	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-7926	NM_001329135	51143		NM_016141	ENSG00000144635	DYNC1LI1	DLC-A|DLIC-1|DNCLI1|LIC1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding
141335	chr2	240573151	240573780	+	0	NA	intron (NM_018226, intron 3 of 10)	intron (NM_018226, intron 3 of 10)	4981	NM_018226	57140		NM_018226	ENSG00000142327	RNPEPL1	-	arginyl aminopeptidase like 1	protein-coding
62248	chr13	98542771	98544280	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-21400	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
184834	chr5	111337871	111338130	+	0	NA	intron (NM_001744, intron 1 of 10)	L1ME1|LINE|L1	113616	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
17108	chr1	156152471	156152630	+	0	NA	intron (NM_001370568, intron 1 of 13)	intron (NM_001370568, intron 1 of 13)	-1028	NM_001193302	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
29163	chr10	68725801	68726350	+	0	NA	intron (NM_018237, intron 2 of 24)	AluJb|SINE|Alu	4836	NR_104262	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
205787	chr7	23636551	23637050	+	0	NA	intron (NM_138771, intron 3 of 3)	SVA_E|Retroposon|SVA	39418	NM_138771	90693		NM_138771	ENSG00000169193	CCDC126	-	coiled-coil domain containing 126	protein-coding
135789	chr2	169803371	169803800	+	0	NA	intron (NM_003142, intron 2 of 11)	AluJb|SINE|Alu	4283	NM_001294145	6741		NM_003142	ENSG00000138385	SSB	LARP3|La|La/SSB	small RNA binding exonuclease protection factor La	protein-coding
206231	chr7	28958171	28958650	+	0	NA	promoter-TSS (NM_014817)	promoter-TSS (NM_014817)	-80	NM_014817	9865		NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
2676	chr1	10524951	10526050	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	50550	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
192841	chr6	27144871	27146300	+	0	NA	TTS (NM_001312653)	TTS (NM_001312653)	1270	NM_001312653	85236		NM_080593	ENSG00000197903	H2BC12	H2B/S|H2BFAiii|H2BFT|H2BK|HIST1H2BK	H2B clustered histone 12	protein-coding
48757	chr12	11170921	11172050	+	0	NA	non-coding (NR_037918, exon 1 of 10)	non-coding (NR_037918, exon 1 of 10)	126	NM_001316893	106707243		NM_001316893	ENSG00000212127	PRH1-TAS2R14	-	PRH1-TAS2R14 readthrough	protein-coding
94450	chr17	29248921	29249380	+	0	NA	exon (NM_005208, exon 2 of 6)	exon (NM_005208, exon 2 of 6)	2291	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
217439	chr8	28530451	28530630	+	0	NA	intron (NM_017412, intron 5 of 7)	intron (NM_017412, intron 5 of 7)	-25358	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	ncRNA
1772	chr1	6033021	6033480	+	0	NA	intron (NM_172130, intron 1 of 14)	(TGTGTG)n|Simple_repeat|Simple_repeat	-1438	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
7300	chr1	32413851	32414530	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	-19749	NM_001143889	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
90583	chr17	1563871	1564030	+	0	NA	Intergenic	L2c|LINE|L2	-1158	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
202194	chr6	156395001	156395500	+	0	NA	Intergenic	Intergenic	16500	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
58892	chr13	19486821	19486900	+	0	NA	intron (NM_199254, intron 4 of 20)	L1M2c|LINE|L1	16417	NR_073486	93492		NM_130785	ENSG00000132958	TPTE2	TPIP	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2	protein-coding
238416	chrX	150587521	150588230	+	0	NA	intron (NM_001376908, intron 1 of 14)	MER20B|DNA|hAT-Charlie	19254	NM_000252	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
45777	chr11	119281621	119281880	+	0	NA	intron (NM_005188, intron 9 of 15)	AluY|SINE|Alu	31262	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
55906	chr12	109731371	109732130	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	17925	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
119563	chr19	40627771	40627930	+	0	NA	exon (NM_003573, exon 32 of 33)	exon (NM_003573, exon 32 of 33)	26481	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
146410	chr20	49482471	49483100	+	0	NA	promoter-TSS (NM_004975)	promoter-TSS (NM_004975)	-117	NM_004975	3745		NM_004975	ENSG00000158445	KCNB1	DEE26|DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
58923	chr13	19750301	19750700	+	0	NA	intron (NM_001354909, intron 4 of 8)	intron (NM_001354909, intron 4 of 8)	32445	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
200925	chr6	139150001	139150330	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	15085	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
26420	chr10	17212851	17212950	+	0	NA	Intergenic	LTR78|LTR|ERV1	-10829	NM_001351223	1787		NM_004412	ENSG00000107614	TRDMT1	DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1	tRNA aspartic acid methyltransferase 1	protein-coding
116760	chr19	18487721	18488900	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	33760	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
116491	chr19	18122521	18122780	+	0	NA	intron (NM_015016, intron 4 of 26)	intron (NM_015016, intron 4 of 26)	-23834	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
22026	chr1	210328251	210329600	+	0	NA	promoter-TSS (NM_001170587)	promoter-TSS (NM_001170587)	19	NM_001170588	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
237297	chrX	115730501	115731030	+	0	NA	Intergenic	CpG	-110199	NR_147173	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
156411	chr22	41194251	41194900	+	0	NA	intron (NR_110514, intron 2 of 2)	AluJo|SINE|Alu	2926	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
125532	chr2	12987321	12987580	+	0	NA	intron (NR_038434, intron 4 of 5)	L2a|LINE|L2	19563	NR_038434	100506474		NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
107299	chr18	44759921	44760550	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	59360	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
4627	chr1	22111851	22112150	+	0	NA	Intergenic	Intergenic	31097	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
120478	chr19	44745421	44745880	+	0	NA	Intergenic	Intergenic	-3058	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
51720	chr12	53210821	53211300	+	0	NA	3' UTR (NM_001243731, exon 8 of 8)	3' UTR (NM_001243731, exon 8 of 8)	-3809	NM_000889	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
80106	chr16	2021501	2021700	+	0	NA	TTS (NM_001099456)	TTS (NM_001099456)	1815	NM_001099456	283869		NM_001099456	ENSG00000183971	NPW	L8|L8C|PPL8|PPNPW	neuropeptide W	protein-coding
231486	chr9	131374951	131375300	+	0	NA	intron (NM_001384822, intron 1 of 30)	AluSg|SINE|Alu	1474	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
18407	chr1	161434551	161434650	+	0	NA	Intergenic	LTR5A|LTR|ERVK	-66724	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
227453	chr9	90763501	90763900	+	0	NA	Intergenic	MER66A|LTR|ERV1	-37900	NM_001174168	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
156597	chr22	41536871	41538550	+	0	NA	intron (NM_138338, intron 3 of 6)	intron (NM_138338, intron 3 of 6)	6760	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
116517	chr19	18165401	18166200	+	0	NA	intron (NR_162071, intron 10 of 14)	MIRb|SINE|MIR	-8013	NM_006332	10437		NM_006332	ENSG00000216490	IFI30	GILT|IFI-30|IP-30|IP30	IFI30 lysosomal thiol reductase	protein-coding
130888	chr2	87423171	87423850	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-31917	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
137094	chr2	190946201	190946550	+	0	NA	intron (NM_014905, intron 14 of 17)	intron (NM_014905, intron 14 of 17)	65554	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
13098	chr1	111607571	111608030	+	0	NA	intron (NR_034126, intron 1 of 4)	SVA_D|Retroposon|SVA	518	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
113579	chr19	10269021	10270600	+	0	NA	Intergenic	CpG	-1310	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
232242	chr9	134389171	134389330	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	9839	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
124740	chr2	6877251	6878100	+	0	NA	promoter-TSS (NM_080657)	promoter-TSS (NM_080657)	-102	NM_080657	91543		NM_080657	ENSG00000134321	RSAD2	SAND|cig33|cig5|vig1	radical S-adenosyl methionine domain containing 2	protein-coding
50411	chr12	47363271	47363600	+	0	NA	TTS (NR_039715)	TTS (NR_039715)	834	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
165859	chr3	105882501	105883230	+	0	NA	Intergenic	AluY|SINE|Alu	-13464	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
221876	chr8	128486201	128486400	+	0	NA	intron (NR_121672, intron 2 of 7)	MIRc|SINE|MIR	78379	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
177274	chr4	109444551	109444850	+	0	NA	intron (NM_001318085, intron 1 of 23)	intron (NM_001318085, intron 1 of 23)	-10883	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
118642	chr19	37296501	37296980	+	0	NA	Intergenic	SST1|Satellite|centr	-16097	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
147583	chr20	61500851	61501150	+	0	NA	intron (NM_001252338, intron 1 of 14)	intron (NM_001252338, intron 1 of 14)	1579	NM_001252338	1002		NM_001794	ENSG00000179242	CDH4	CAD4|R-CAD|RCAD	cadherin 4	protein-coding
67059	chr14	67816051	67817530	+	0	NA	promoter-TSS (NM_015346)	promoter-TSS (NM_015346)	-200	NM_015346	23503		NM_015346	ENSG00000072121	ZFYVE26	FYVE-CENT|SPG15	zinc finger FYVE-type containing 26	protein-coding
154109	chr22	31090971	31091130	+	0	NA	exon (NM_006932, exon 10 of 20)	exon (NM_006932, exon 10 of 20)	6054	NM_001207018	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
236003	chrX	54738571	54738730	+	0	NA	Intergenic	L1PA4|LINE|L1	59605	NM_198510	347365		NM_198510	ENSG00000102313	ITIH6	ITIH5L|UNQ6369|dJ14O9.1	inter-alpha-trypsin inhibitor heavy chain family member 6	protein-coding
59534	chr13	27255351	27255880	+	0	NA	TTS (NR_002574)	TTS (NR_002574)	214	NR_002575	619499		NR_002575	ENSG00000207051	SNORA27	ACA27	small nucleolar RNA, H/ACA box 27	snoRNA
92022	chr17	7471651	7472300	+	0	NA	intron (NM_020899, intron 1 of 3)	intron (NM_020899, intron 1 of 3)	7656	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
162457	chr3	48475551	48476230	+	0	NA	intron (NM_016479, intron 3 of 5)	intron (NM_016479, intron 3 of 5)	-2732	NM_001272083	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
171245	chr3	195801851	195803200	+	0	NA	intron (NM_018406, intron 1 of 24)	intron (NM_018406, intron 1 of 24)	9404	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
78918	chr15	101201351	101201780	+	0	NA	intron (NM_014918, intron 2 of 2)	intron (NM_014918, intron 2 of 2)	50483	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
102944	chr17	76677651	76677750	+	0	NA	exon (NM_001008528, exon 4 of 4)	exon (NM_001008528, exon 4 of 4)	5772	NR_130916	105274304		NR_130916	ENSG00000261335	LOC105274304	-	uncharacterized LOC105274304	ncRNA
204388	chr7	3029801	3030000	+	0	NA	intron (NM_001324281, intron 1 of 25)	AluYh3|SINE|Alu	13967	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
12750	chr1	109620501	109622450	+	0	NA	intron (NM_001308170, intron 1 of 16)	intron (NM_001308170, intron 1 of 16)	333	NM_004037	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
34506	chr10	132571171	132571330	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	33463	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
205802	chr7	24283751	24284480	+	0	NA	promoter-TSS (NM_000905)	promoter-TSS (NM_000905)	-75	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
215985	chr8	8865551	8865850	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	27930	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
75872	chr15	69715851	69716050	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-119284	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
38199	chr11	36386301	36386680	+	0	NA	intron (NM_024841, intron 2 of 9)	intron (NM_024841, intron 2 of 9)	10505	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
223847	chr9	28971	29500	+	0	NA	promoter-TSS (NR_036051).4	promoter-TSS (NR_036051).4	221	NM_001378090	100287171		NM_182905	ENSG00000181404	WASHC1	FAM39E|WASH|WASH1	WASH complex subunit 1	protein-coding
194435	chr6	33125951	33126550	+	0	NA	intron (NR_001435, intron 2 of 4)	intron (NR_001435, intron 2 of 4)	13734	NR_001435	3116		NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo
183689	chr5	80740671	80741300	+	0	NA	intron (NM_002439, intron 10 of 23)	AluSz6|SINE|Alu	-86002	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
195033	chr6	35479351	35479880	+	0	NA	intron (NM_003214, intron 4 of 12)	intron (NM_003214, intron 4 of 12)	9107	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
86166	chr16	57795221	57796080	+	0	NA	intron (NM_005550, intron 2 of 18)	intron (NM_005550, intron 2 of 18)	2367	NM_001130099	3801		NM_005550	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
20821	chr1	201361751	201361850	+	0	NA	intron (NM_001276346, intron 12 of 14)	intron (NM_001276346, intron 12 of 14)	15880	NM_001001430	7139		NM_000364	ENSG00000118194	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T2, cardiac type	protein-coding
239159	chrY	11643651	11643830	+	0	NA	Intergenic	Intergenic	777850	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
109157	chr19	199751	199850	+	0	NA	non-coding (NR_028324, exon 3 of 3)	non-coding (NR_028324, exon 3 of 3)	2409	NR_028324	399844		NM_001004321		LINC01002	-	long intergenic non-protein coding RNA 1002	ncRNA
176031	chr4	82362371	82363150	+	0	NA	intron (NM_001003810, intron 1 of 6)	AluSz6|SINE|Alu	11231	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
132402	chr2	105793071	105794230	+	0	NA	intron (NM_001004722, intron 1 of 3)	L1MC5|LINE|L1	48587	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
125736	chr2	20663521	20664400	+	0	NA	Intergenic	Intergenic	-3184	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
52120	chr12	54199121	54199580	+	0	NA	Intergenic	L2b|LINE|L2	-10356	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
211453	chr7	105085421	105085930	+	0	NA	intron (NM_182931, intron 13 of 26)	L1ME3D|LINE|L1	71470	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
93867	chr17	21031451	21032180	+	0	NA	intron (NM_015276, intron 1 of 12)	intron (NM_015276, intron 1 of 12)	11196	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
36773	chr11	9402551	9403000	+	0	NA	intron (NM_006391, intron 1 of 24)	AluSx4|SINE|Alu	18123	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
82008	chr16	11915301	11917130	+	0	NA	promoter-TSS (NM_002094)	promoter-TSS (NM_002094)	-259	NM_001130006	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
94617	chr17	29825501	29825780	+	0	NA	intron (NM_033389, intron 1 of 14)	intron (NM_033389, intron 1 of 14)	-64208	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
20128	chr1	192544751	192545400	+	0	NA	Intergenic	Intergenic	-30698	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
88472	chr16	85055021	85056380	+	0	NA	intron (NM_001286566, intron 1 of 11)	L3|LINE|CR1	-7512	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
183560	chr5	80138171	80138730	+	0	NA	TTS (NM_001174072)	TTS (NM_001174072)	-54785	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
174970	chr4	49621421	49621550	+	0	NA	Intergenic	L1P1|LINE|L1	634843	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
34348	chr10	132198721	132198980	+	0	NA	intron (NM_006426, intron 7 of 13)	intron (NM_006426, intron 7 of 13)	11902	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
27885	chr10	41871771	41872580	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	495870	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
3917	chr1	17393071	17393430	+	0	NA	intron (NM_207421, intron 9 of 15)	intron (NM_207421, intron 9 of 15)	21054	NM_207421	353238		NM_207421	ENSG00000276747	PADI6	OZEMA16|PREMBL2|hPADVI	peptidyl arginine deiminase 6	protein-coding
152156	chr22	20019221	20019680	+	0	NA	intron (NM_001322163, intron 2 of 7)	intron (NM_001322163, intron 2 of 7)	-1619	NM_001283148	128989		NM_152906	ENSG00000183597	TANGO2	C22orf25|MECRCN	transport and golgi organization 2 homolog	protein-coding
176304	chr4	87388451	87389050	+	0	NA	intron (NM_016245, intron 1 of 6)	L2a|LINE|L2	2438	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
217876	chr8	37855621	37855880	+	0	NA	Intergenic	AluJo|SINE|Alu	-5889	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
199507	chr6	118687271	118687630	+	0	NA	intron (NM_001178035, intron 1 of 13)	LTR17|LTR|ERV1	22625	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
56810	chr12	120214621	120214880	+	0	NA	intron (NM_001080855, intron 9 of 11)	intron (NM_001080855, intron 9 of 11)	13459	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
192368	chr6	24701971	24702430	+	0	NA	3' UTR (NM_001160094, exon 4 of 4)	3' UTR (NM_001160094, exon 4 of 4)	16954	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
87836	chr16	75646251	75646550	+	0	NA	intron (NM_001130089, intron 1 of 14)	AluSc|SINE|Alu	1265	NM_001130089	3735		NM_005548	ENSG00000065427	KARS1	CMTRIB|DEAPLE|DFNB89|KARS|KARS2|KRS|LEPID	lysyl-tRNA synthetase 1	protein-coding
20783	chr1	201028371	201028850	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-4896	NM_001252102	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
5715	chr1	26392921	26393180	+	0	NA	Intergenic	Intergenic	-17767	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
207938	chr7	51120971	51121330	+	0	NA	intron (NM_001346441, intron 6 of 12)	L1MB2|LINE|L1	195659	NM_001346441	23242		NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
51637	chr12	53004471	53004630	+	0	NA	Intergenic	L1ME3|LINE|L1	-1906	NM_001300821	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
186779	chr5	139345321	139345980	+	0	NA	intron (NM_001033112, intron 1 of 3)	AluY|SINE|Alu	3216	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
34702	chr10	133438821	133439080	+	0	NA	Intergenic	Intergenic	-14333	NM_001012508	503542		NM_001012508	ENSG00000203772	SPRN	SHADOO|SHO|bA108K14.1	shadow of prion protein	protein-coding
140157	chr2	231610801	231611000	+	0	NA	Intergenic	AluSx1|SINE|Alu	18036	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
63549	chr14	20327251	20327780	+	0	NA	promoter-TSS (NR_003693)	promoter-TSS (NR_003693)	-976	NR_003693	100113391		NR_003693		SNORD126	MIR1201|MIRN1201	small nucleolar RNA, C/D box 126	snoRNA
183717	chr5	80997871	80998030	+	0	NA	intron (NM_006909, intron 1 of 26)	AluYm1|SINE|Alu	-37043	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
11150	chr1	86842351	86842450	+	0	NA	Intergenic	AluY|SINE|Alu	71726	NM_004261	9403		NM_004261	ENSG00000183291	SELENOF	SEP15	selenoprotein F	protein-coding
131225	chr2	95163121	95163380	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-2559	NM_001017396	7549		NM_021088	ENSG00000275111	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
588	chr1	1286951	1287550	+	0	NA	non-coding (NR_037668, exon 8 of 17)	non-coding (NR_037668, exon 8 of 17)	6814	NM_001130413	6339		NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	sodium channel epithelial 1 subunit delta	protein-coding
21278	chr1	204407951	204408580	+	0	NA	intron (NM_032833, intron 1 of 1)	intron (NM_032833, intron 1 of 1)	3552	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
122799	chr19	50361121	50362480	+	0	NA	intron (NM_004851, intron 3 of 8)	intron (NM_004851, intron 3 of 8)	3839	NM_004851	9476		NM_004851	ENSG00000131400	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
16444	chr1	154576301	154576680	+	0	NA	3' UTR (NM_000748, exon 6 of 6)	3' UTR (NM_000748, exon 6 of 6)	8712	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
158967	chr3	10241851	10242950	+	0	NA	3' UTR (NM_001570, exon 13 of 13)	3' UTR (NM_001570, exon 13 of 13)	-6059	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
189027	chr5	169257221	169257300	+	0	NA	intron (NM_003062, intron 1 of 35)	MLT1J2|LTR|ERVL-MaLR	6434	NR_030311	693170		NR_030311	ENSG00000207619	MIR585	MIRN585|hsa-mir-585|mir-585	microRNA 585	ncRNA
212428	chr7	128343151	128344500	+	0	NA	promoter-TSS (NM_001166135)	promoter-TSS (NM_001166135)	83	NM_001166135	55131		NM_018077	ENSG00000106344	RBM28	ANES|NOP4	RNA binding motif protein 28	protein-coding
10838	chr1	77953151	77953450	+	0	NA	intron (NR_146539, intron 18 of 22)	AluSx1|SINE|Alu	25772	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
113597	chr19	10285251	10285730	+	0	NA	3' UTR (NM_000201, exon 7 of 7)	3' UTR (NM_000201, exon 7 of 7)	-1465	NM_001039132	3386		NM_001544	ENSG00000105371	ICAM4	CD242|LW	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	protein-coding
153517	chr22	26520151	26520650	+	0	NA	Intergenic	AluSz|SINE|Alu	7868	NR_144529	100507599		NR_144529	ENSG00000261188	TFIP11-DT	-	TFIP11 divergent transcript	ncRNA
207074	chr7	39956671	39957530	+	0	NA	intron (NM_003718, intron 1 of 13)	(GT)n|Simple_repeat|Simple_repeat	6740	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
95987	chr17	39191901	39192500	+	0	NA	intron (NM_199247, intron 2 of 12)	intron (NM_199247, intron 2 of 12)	5469	NM_199248	782		NM_000723	ENSG00000067191	CACNB1	CAB1|CACNLB1|CCHLB1	calcium voltage-gated channel auxiliary subunit beta 1	protein-coding
121108	chr19	45940001	45940200	+	0	NA	exon (NM_002516, exon 4 of 4)	exon (NM_002516, exon 4 of 4)	-25322	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
156579	chr22	41518821	41519130	+	0	NA	intron (NM_001098, intron 8 of 17)	intron (NM_001098, intron 8 of 17)	25495	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
41539	chr11	66286151	66286350	+	0	NA	intron (NM_001300861, intron 4 of 6)	intron (NM_001300861, intron 4 of 6)	2893	NM_001300861	10897		NM_020470	ENSG00000174851	YIF1A	54TM|FinGER7|YIF1|YIF1P	Yip1 interacting factor homolog A, membrane trafficking protein	protein-coding
45531	chr11	118747671	118748280	+	0	NA	3' UTR (NM_001257191, exon 14 of 14)	3' UTR (NM_001257191, exon 14 of 14)	42973	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
104120	chr17	80315321	80316030	+	0	NA	intron (NM_020954, intron 15 of 16)	intron (NM_020954, intron 15 of 16)	54823	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
1321	chr1	2409771	2410500	+	0	NA	intron (NR_164636, intron 2 of 5)	intron (NR_164636, intron 2 of 5)	2429	NM_002617	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
192396	chr6	24778201	24778550	+	0	NA	intron (NM_015895, intron 2 of 6)	AluJo|SINE|Alu	2962	NM_001251991	51053		NM_015895	ENSG00000112312	GMNN	Gem|MGORS6	geminin DNA replication inhibitor	protein-coding
204626	chr7	5387921	5388180	+	0	NA	exon (NM_001080495, exon 5 of 30)	exon (NM_001080495, exon 5 of 30)	35496	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
41768	chr11	66728051	66729480	+	0	NA	5' UTR (NM_006946, exon 1 of 38)	5' UTR (NM_006946, exon 1 of 38)	451	NM_006946	6712		NM_006946	ENSG00000173898	SPTBN2	GTRAP41|SCA5|SCAR14	spectrin beta, non-erythrocytic 2	protein-coding
40066	chr11	62755371	62755830	+	0	NA	Intergenic	Intergenic	-1440	NM_001363109	79842		NM_024784	ENSG00000185670	ZBTB3	-	zinc finger and BTB domain containing 3	protein-coding
68413	chr14	81169851	81170920	+	0	NA	Intergenic	L1P4a|LINE|L1	32449	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
201045	chr6	142155671	142155930	+	0	NA	intron (NM_001286372, intron 1 of 5)	L2b|LINE|L2	8537	NM_016485	51534		NM_016485	ENSG00000009844	VTA1	6orf55|C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1	vesicle trafficking 1	protein-coding
177992	chr4	139260951	139261250	+	0	NA	Intergenic	AluSc8|SINE|Alu	19125	NM_032623	84709		NM_032623	ENSG00000137463	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria localized glutamic acid rich protein	protein-coding
125113	chr2	9770351	9770800	+	0	NA	Intergenic	MIR|SINE|MIR	-72867	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
9656	chr1	52631451	52632410	+	0	NA	Intergenic	Intergenic	-1238	NR_135156	348378		NM_001042693	ENSG00000182183	SHISAL2A	FAM159A|PRO7171|WWLS2783	shisa like 2A	protein-coding
162622	chr3	48714471	48714930	+	0	NA	intron (NM_016291, intron 1 of 5)	intron (NM_016291, intron 1 of 5)	2521	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
10131	chr1	59544751	59544850	+	0	NA	intron (NM_001278224, intron 1 of 9)	MIRb|SINE|MIR	29170	NM_001278224	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
120795	chr19	45455221	45456830	+	0	NA	Intergenic	Intergenic	-4478	NM_001369413	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
199886	chr6	127821301	127821700	+	0	NA	intron (NM_001010923, intron 3 of 5).2	intron (NM_001010923, intron 3 of 5).2	33688	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
38027	chr11	35140871	35141880	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	2204	NM_001001391	960		NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECM-III|ECMR-III|H-CAM|HCELL|HUTCH-1|HUTCH-I|Hermes-1|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (IN blood group)	protein-coding
64021	chr14	22508821	22509430	+	0	NA	Intergenic	Intergenic	-26166	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
189249	chr5	172008251	172008830	+	0	NA	Intergenic	MIR3|SINE|MIR	-1902	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
132174	chr2	101789151	101789250	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	90935	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
54642	chr12	92930371	92930550	+	0	NA	Intergenic	Intergenic	-1165	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
172947	chr4	3525201	3526030	+	0	NA	intron (NM_002337, intron 1 of 7)	intron (NM_002337, intron 1 of 7)	6534	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
15843	chr1	151395471	151395630	+	0	NA	Intergenic	AluJo|SINE|Alu	-4023	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
184050	chr5	91384771	91385730	+	0	NA	intron (NR_027435, intron 1 of 2)	intron (NR_027435, intron 1 of 2)	-1933	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
195339	chr6	36623021	36624400	+	0	NA	Intergenic	Intergenic	-1198	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
188910	chr5	160199271	160199880	+	0	NA	intron (NM_001040442, intron 1 of 5)	intron (NM_001040442, intron 1 of 5)	534	NM_001040442	2172		NM_001445	ENSG00000170231	FABP6	I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP	fatty acid binding protein 6	protein-coding
19612	chr1	179886971	179887330	+	0	NA	intron (NM_015602, intron 2 of 9)	AluSg|SINE|Alu	4865	NM_001267578	26092		NM_015602	ENSG00000143337	TOR1AIP1	LAP1|LAP1B|LAP1C|LGMD2Y	torsin 1A interacting protein 1	protein-coding
67985	chr14	74913001	74913400	+	0	NA	intron (NR_163406, intron 3 of 11)	intron (NR_163406, intron 3 of 11)	9242	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
153760	chr22	29423271	29423430	+	0	NA	Intergenic	Intergenic	-15233	NM_021026	5988		NM_021026	ENSG00000128250	RFPL1	RNF78	ret finger protein like 1	protein-coding
235162	chrX	41125401	41125600	+	0	NA	intron (NM_001039590, intron 2 of 44)	L1M5|LINE|L1	40055	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
79800	chr16	1396301	1396800	+	0	NA	intron (NM_001372107, intron 6 of 14)	AluSz|SINE|Alu	-16898	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
170691	chr3	187801821	187802300	+	0	NA	Intergenic	Intergenic	-56592	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
85452	chr16	50617171	50617530	+	0	NA	intron (NM_033119, intron 4 of 9)	intron (NM_033119, intron 4 of 9)	-51505	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
223525	chr8	144113071	144113550	+	0	NA	intron (NM_001316309, intron 15 of 23)	intron (NM_001316309, intron 15 of 23)	5571	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
238325	chrX	149531221	149531480	+	0	NA	intron (NR_027455, intron 7 of 9)	intron (NR_027455, intron 7 of 9)	8402	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
143490	chr20	31074171	31074630	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-183264	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
2070	chr1	7932471	7933100	+	0	NA	intron (NM_001561, intron 7 of 7)	intron (NM_001561, intron 7 of 7)	8054	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
153491	chr22	26461201	26461500	+	0	NA	intron (NR_146311, intron 11 of 13)	intron (NR_146311, intron 11 of 13)	18138	NR_073136	89781		NM_022081	ENSG00000100099	HPS4	BLOC3S2|LE	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding
113411	chr19	9583901	9584800	+	0	NA	intron (NM_001308269, intron 1 of 4)	CpG	154	NM_001008727	7675		NM_001008727	ENSG00000197961	ZNF121	D19S204|ZHC32|ZNF20	zinc finger protein 121	protein-coding
33125	chr10	112314901	112315200	+	0	NA	intron (NR_028134, intron 14 of 18)	intron (NR_028134, intron 14 of 18)	-15362	NR_106772	102465427		NR_106772	ENSG00000283688	MIR6715B	hsa-mir-6715b	microRNA 6715b	ncRNA
168208	chr3	141237201	141237400	+	0	NA	intron (NM_152282, intron 3 of 7)	intron (NM_152282, intron 3 of 7)	5475	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
44966	chr11	116849551	116849850	+	0	NA	intron (NM_001281748, intron 21 of 24)	L2c|LINE|L2	-11750	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
143761	chr20	32386071	32386430	+	0	NA	intron (NM_015338, intron 3 of 11)	intron (NM_015338, intron 3 of 11)	27185	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
78852	chr15	100329571	100329730	+	0	NA	intron (NM_139057, intron 3 of 21)	intron (NM_139057, intron 3 of 21)	12325	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
181980	chr5	55175101	55175580	+	0	NA	Intergenic	L1MC4a|LINE|L1	-2163	NM_152623	166979		NM_152623	ENSG00000164287	CDC20B	G6VTS76519	cell division cycle 20B	protein-coding
237279	chrX	111680821	111682200	+	0	NA	promoter-TSS (NM_001257239)	promoter-TSS (NM_001257239)	-147	NM_001324294	79868		NM_018466	ENSG00000101901	ALG13	CDG1S|CXorf45|DEE36|EIEE36|GLT28D1|MDS031|TDRD13|YGL047W	ALG13 UDP-N-acetylglucosaminyltransferase subunit	protein-coding
85234	chr16	48243001	48243400	+	0	NA	intron (NM_145186, intron 1 of 29)	AluYm1|SINE|Alu	-1100	NM_001348078	83752		NM_031490	ENSG00000102910	LONP2	LONP|LONPL|PLON|PSLON	lon peptidase 2, peroxisomal	protein-coding
165283	chr3	75669051	75669800	+	0	NA	Intergenic	CpG	-2856	NR_040005	401074		NR_040004	ENSG00000242516	LINC00960	-	long intergenic non-protein coding RNA 960	ncRNA
210727	chr7	100614001	100614530	+	0	NA	intron (NM_001040097, intron 4 of 5)	AluSx|SINE|Alu	1725	NM_001040099	64598		NM_023948	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
147055	chr20	53679901	53680100	+	0	NA	Intergenic	Intergenic	71646	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
107277	chr18	44507771	44508830	+	0	NA	intron (NR_110792, intron 2 of 4)	intron (NR_110792, intron 2 of 4)	23397	NR_110792	101927921		NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
221439	chr8	124037701	124038100	+	0	NA	intron (NM_001039112, intron 19 of 40)	intron (NM_001039112, intron 19 of 40)	2882	NR_040044	439941		NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
74404	chr15	58935271	58935730	+	0	NA	Intergenic	AluSz|SINE|Alu	-1821	NR_135042	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
206423	chr7	32636851	32636950	+	0	NA	intron (NR_036680, intron 7 of 16)	intron (NR_036680, intron 7 of 16)	82268	NR_036680	100129460		NR_036680		DPY19L1P1	-	DPY19L1 pseudogene 1	pseudo
3639	chr1	16387321	16388730	+	0	NA	intron (NR_073501, intron 2 of 4)	intron (NR_073501, intron 2 of 4)	20783	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
165912	chr3	106975721	106976050	+	0	NA	Intergenic	L1PA2|LINE|L1	264753	NR_028303	100302640		NR_028303		LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
60921	chr13	46202101	46202730	+	0	NA	Intergenic	Intergenic	-9513	NM_001282460	220416		NM_001024609	ENSG00000173988	LRRC63	-	leucine rich repeat containing 63	protein-coding
79461	chr16	732421	732780	+	0	NA	intron (NM_022493, intron 7 of 10)	intron (NM_022493, intron 7 of 10)	5494	NM_032304	84264		NM_032304	ENSG00000103253	HAGHL	-	hydroxyacylglutathione hydrolase like	protein-coding
28949	chr10	63223221	63223930	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	45648	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
159129	chr3	12636551	12636850	+	0	NA	intron (NM_001354691, intron 1 of 16)	AluJb|SINE|Alu	26808	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
166065	chr3	108831221	108832030	+	0	NA	intron (NM_016388, intron 2 of 5)	AluJr4|SINE|Alu	8839	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
37305	chr11	14750001	14750200	+	0	NA	intron (NM_001363569, intron 1 of 15)	MLT2B4|LTR|ERVL	106296	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
103486	chr17	78362051	78362350	+	0	NA	intron (NR_110845, intron 2 of 3)	AluSc5|SINE|Alu	1198	NR_110846	101928674		NR_110845	ENSG00000266970	SOCS3-DT	-	SOCS3 divergent transcript	ncRNA
218220	chr8	42033471	42033630	+	0	NA	intron (NM_001305878, intron 2 of 13)	L2c|LINE|L2	-18200	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
64856	chr14	35261851	35262100	+	0	NA	intron (NM_001256678, intron 4 of 6)	intron (NM_001256678, intron 4 of 6)	-16583	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
96926	chr17	42157721	42157980	+	0	NA	intron (NM_012285, intron 16 of 16)	AluJr|SINE|Alu	-2861	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
187156	chr5	140556801	140558600	+	0	NA	promoter-TSS (NM_001253764)	promoter-TSS (NM_001253764)	-227	NM_001035235	10011		NM_001035235	ENSG00000213523	SRA1	SRA|SRAP|STRAA1|pp7684	steroid receptor RNA activator 1	protein-coding
219930	chr8	86481121	86481380	+	0	NA	intron (NM_001286707, intron 4 of 8)	MIR|SINE|MIR	27436	NM_016033	51115		NM_016033	ENSG00000176623	RMDN1	CGI-90|FAM82B|RMD-1|RMD1	regulator of microtubule dynamics 1	protein-coding
132620	chr2	108614871	108615030	+	0	NA	intron (NM_001193482, intron 1 of 9)	intron (NM_001193482, intron 1 of 9)	-6301	NM_001193484	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
151471	chr21	46230971	46231330	+	0	NA	intron (NR_110565, intron 2 of 3)	AluJr|SINE|Alu	1919	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
1046	chr1	1886271	1886950	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	4477	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
163141	chr3	50141101	50141600	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-13708	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
186746	chr5	139307271	139308550	+	0	NA	exon (NM_018834, exon 2 of 15)	exon (NM_018834, exon 2 of 15)	14160	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
104773	chr17	81710221	81710880	+	0	NA	Intergenic	Intergenic	-1686	NM_001270953	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
232126	chr9	133990751	133991100	+	0	NA	intron (NM_001134398, intron 1 of 29)	intron (NM_001134398, intron 1 of 29)	1399	NM_001134398	7410		NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
141470	chr2	241072451	241072750	+	0	NA	non-coding (NR_138463, exon 7 of 7)	non-coding (NR_138463, exon 7 of 7)	29687	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
184444	chr5	99104521	99104800	+	0	NA	Intergenic	Intergenic	175526	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
19435	chr1	174335671	174336030	+	0	NA	intron (NM_001366447, intron 11 of 20)	intron (NM_001366447, intron 11 of 20)	60750	NM_001366449	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
190890	chr6	2761171	2761930	+	0	NA	intron (NM_001347872, intron 1 of 12)	MIRb|SINE|MIR	-3843	NM_020135	56897		NM_020135	ENSG00000124535	WRNIP1	CFAP93|FAP93|WHIP|bA420G6.2	WRN helicase interacting protein 1	protein-coding
174699	chr4	42490071	42490230	+	0	NA	intron (NM_001105529, intron 23 of 35)	intron (NM_001105529, intron 23 of 35)	92662	NM_001080505	152573		NM_001080505	ENSG00000178343	SHISA3	hShisa3	shisa family member 3	protein-coding
113742	chr19	10491171	10491330	+	0	NA	intron (NM_012289, intron 3 of 5)	FLAM_C|SINE|Alu	11521	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
217849	chr8	37762151	37764050	+	0	NA	intron (NM_007198, intron 1 of 7)	CpG	455	NM_007198	11212		NM_007198	ENSG00000147471	PLPBP	EPEO1|EPVB6D|PROSC	pyridoxal phosphate binding protein	protein-coding
192431	chr6	24887021	24887630	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-9960	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
104674	chr17	81498171	81498330	+	0	NA	Intergenic	L1MB2|LINE|L1	14549	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
923	chr1	1708671	1708980	+	0	NA	exon (NM_024011, exon 9 of 20)	exon (NM_024011, exon 9 of 20)	8886	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
135910	chr2	171433331	171435530	+	0	NA	promoter-TSS (NM_001321160)	promoter-TSS (NM_001321160)	179	NM_001164821	80067		NM_025000	ENSG00000115827	DCAF17	C20orf37|C2orf37	DDB1 and CUL4 associated factor 17	protein-coding
26922	chr10	26472901	26473250	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	34734	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
153336	chr22	24379501	24379930	+	0	NA	intron (NM_001254732, intron 13 of 14)	intron (NM_001254732, intron 13 of 14)	37607	NM_001254733	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
7913	chr1	37480801	37481030	+	0	NA	TTS (NR_106790)	TTS (NR_106790)	685	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
73044	chr15	40873451	40874680	+	0	NA	exon (NM_133639, exon 1 of 3)	exon (NM_133639, exon 1 of 3)	169	NM_133639	171177		NM_133639	ENSG00000104140	RHOV	ARHV|CHP|WRCH2	ras homolog family member V	protein-coding
4452	chr1	21331551	21332280	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	13589	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
26893	chr10	26436871	26437200	+	0	NA	Intergenic	MER50|LTR|ERV1	-1306	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
235078	chrX	40175091	40176000	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	1732	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
91445	chr17	4785001	4786230	+	0	NA	exon (NM_182566, exon 3 of 3)	exon (NM_182566, exon 3 of 3)	749	NM_001144940	284013		NM_182566	ENSG00000182853	VMO1	ERGA6350|PRO21055	vitelline membrane outer layer 1 homolog	protein-coding
227188	chr9	87937551	87937850	+	0	NA	intron (NR_149022, intron 1 of 3)	intron (NR_149022, intron 1 of 3)	1560	NR_149022	497256		NR_149022		LOC497256	-	uncharacterized LOC497256	ncRNA
23639	chr1	230636501	230636980	+	0	NA	Intergenic	L2a|LINE|L2	-5741	NM_007357	22796		NM_007357	ENSG00000135775	COG2	CDG2Q|LDLC	component of oligomeric golgi complex 2	protein-coding
82173	chr16	14924571	14925180	+	0	NA	TTS (NR_103772)	TTS (NR_103772)	-1062	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
76733	chr15	76285321	76285600	+	0	NA	intron (NM_001127716, intron 6 of 10)	intron (NM_001127716, intron 6 of 10)	-25308	NR_028510	7302		NR_002721		TYRO3P	-	TYRO3P protein tyrosine kinase pseudogene	pseudo
107026	chr18	32098701	32099030	+	0	NA	intron (NM_198128, intron 1 of 4)	AluYj4|SINE|Alu	6259	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
8569	chr1	41365171	41365330	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	3816	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
198195	chr6	96899851	96899950	+	0	NA	5' UTR (NM_001323258, exon 1 of 8)	5' UTR (NM_001323258, exon 1 of 8)	1817	NM_001323258	114792		NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
70190	chr14	100440271	100440430	+	0	NA	intron (NM_001350949, intron 2 of 6)	intron (NM_001350949, intron 2 of 6)	63865	NM_001350947	79446		NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
19957	chr1	184868521	184868780	+	0	NA	intron (NM_052966, intron 5 of 13)	intron (NM_052966, intron 5 of 13)	105858	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
226816	chr9	77455051	77455580	+	0	NA	intron (NR_121184, intron 1 of 4)	MLT1E1A|LTR|ERVL-MaLR	7666	NR_121184	101927422		NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
32766	chr10	104332071	104332430	+	0	NA	intron (NM_001272013, intron 1 of 1)	intron (NM_001272013, intron 1 of 1)	1655	NM_033397	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
124518	chr2	142171	142330	+	0	NA	Intergenic	Intergenic	-95745	NM_001077710	642273		NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
106350	chr18	13159501	13159950	+	0	NA	Intergenic	Intergenic	-57957	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
165666	chr3	101857321	101857930	+	0	NA	intron (NM_031419, intron 11 of 11)	intron (NM_031419, intron 11 of 11)	8111	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
73552	chr15	44251871	44252030	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-36769	NR_157849	113201		NM_138423	ENSG00000166734	GOLM2	CASC4|H63	golgi membrane protein 2	protein-coding
6503	chr1	28510421	28512400	+	0	NA	TTS (NR_036473)	TTS (NR_036473)	2852	NR_004404	26768		NR_004404	ENSG00000200087	SNORA73B	105A|E1c|RNU105A|RNU17B|U17B	small nucleolar RNA, H/ACA box 73B	snoRNA
111577	chr19	4065101	4066400	+	0	NA	promoter-TSS (NM_001317990)	promoter-TSS (NM_001317990)	-221	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
35832	chr11	2293801	2294980	+	0	NA	Intergenic	Intergenic	7528	NM_001329958	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
215492	chr7	158585921	158586180	+	0	NA	intron (NM_130843, intron 1 of 21)	intron (NM_130843, intron 1 of 21)	1773	NM_001308267	5799		NM_002847	ENSG00000155093	PTPRN2	IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2	protein tyrosine phosphatase receptor type N2	protein-coding
226531	chr9	71912871	71913100	+	0	NA	intron (NR_157409, intron 1 of 4)	intron (NR_157409, intron 1 of 4)	1346	NM_182505	138241		NM_182505	ENSG00000155621	C9orf85	-	chromosome 9 open reading frame 85	protein-coding
97500	chr17	43904151	43904550	+	0	NA	intron (NM_001278371, intron 1 of 11)	intron (NM_001278371, intron 1 of 11)	-2788	NM_001278375	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
70165	chr14	100312171	100312330	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	4391	NR_029906	442910		NR_029906	ENSG00000198984	MIR345	MIRN345|hsa-mir-345|mir-345	microRNA 345	ncRNA
52731	chr12	56625921	56626380	+	0	NA	intron (NM_013449, intron 1 of 28)	intron (NM_013449, intron 1 of 28)	4176	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
56458	chr12	115451921	115452180	+	0	NA	Intergenic	CpG	696604	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
53796	chr12	69161701	69162330	+	0	NA	Intergenic	Intergenic	-77554	NM_007007	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
57594	chr12	122420521	122420850	+	0	NA	intron (NM_001247997, intron 1 of 25)	AluSx1|SINE|Alu	1884	NM_001247997	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
89659	chr16	89358141	89359450	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	38343	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
173025	chr4	4524001	4524710	+	0	NA	intron (NM_001346282, intron 1 of 10)	MLT1K|LTR|ERVL-MaLR	17693	NM_016930	53407		NM_016930	ENSG00000168818	STX18	Ufe1	syntaxin 18	protein-coding
15419	chr1	150259701	150260480	+	0	NA	intron (NM_012113, intron 1 of 10)	intron (NM_012113, intron 1 of 10)	-1604	NR_145745	109616989		NR_145745		SNORD13C	-	small nucleolar RNA, C/D box 13C	snoRNA
11411	chr1	89706251	89706750	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	73380	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
237246	chrX	110146621	110146880	+	0	NA	intron (NM_001353849, intron 5 of 7)	intron (NM_001353849, intron 5 of 7)	64632	NR_039774	100616491		NR_039774	ENSG00000265584	MIR3978	-	microRNA 3978	ncRNA
167388	chr3	128875421	128876280	+	0	NA	Intergenic	Intergenic	-3640	NR_033426	28976		NM_014049	ENSG00000177646	ACAD9	MC1DN20|NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
162400	chr3	48210621	48210880	+	0	NA	Intergenic	CpG	-12745	NM_004345	820		NM_004345	ENSG00000164047	CAMP	CAP-18|CAP18|CRAMP|FALL-39|FALL39|HSD26|LL37	cathelicidin antimicrobial peptide	protein-coding
117824	chr19	30225321	30225580	+	0	NA	promoter-TSS (NM_001376110)	promoter-TSS (NM_001376110)	-142	NM_001376110	9745		NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
59476	chr13	26221021	26223050	+	0	NA	promoter-TSS (NM_183044)	promoter-TSS (NM_183044)	-144	NM_183043	6049		NM_005977	ENSG00000127870	RNF6	-	ring finger protein 6	protein-coding
179715	chr5	49571	49770	+	0	NA	Intergenic	(GGGTCA)n|Simple_repeat|Simple_repeat	-42498	NM_052909	153478		NM_052909	ENSG00000153404	PLEKHG4B	ARHGEF48	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
235934	chrX	53196771	53197180	+	0	NA	exon (NM_001353978, exon 19 of 26)	exon (NM_001353978, exon 19 of 26)	-1487	NR_106955	102465539		NR_106955	ENSG00000276575	MIR6895	hsa-mir-6895	microRNA 6895	ncRNA
94952	chr17	32103951	32104450	+	0	NA	Intergenic	Intergenic	-38254	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
66822	chr14	64757921	64758650	+	0	NA	intron (NM_001355436, intron 32 of 35)	intron (NM_001355436, intron 32 of 35)	27401	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
146829	chr20	51407851	51407950	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	45077	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
71662	chr14	106875401	106875880	+	0	NA	Intergenic	Intergenic	-24641	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
98567	chr17	47709271	47709630	+	0	NA	exon (NM_014726, exon 8 of 9)	exon (NM_014726, exon 8 of 9)	14186	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
165698	chr3	102057901	102058750	+	0	NA	Intergenic	L2a|LINE|L2	-105380	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
21758	chr1	206906901	206907480	+	0	NA	intron (NM_001193338, intron 6 of 6)	intron (NM_001193338, intron 6 of 6)	9747	NM_006850	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
66993	chr14	67240551	67242030	+	0	NA	promoter-TSS (NM_022474)	promoter-TSS (NM_022474)	-145	NM_001256550	64398		NM_022474	ENSG00000072415	PALS1	MPP5	protein associated with LIN7 1, MAGUK p55 family member	protein-coding
105232	chr17	82374971	82375330	+	0	NA	exon (NM_001381897, exon 2 of 2)	exon (NM_001381897, exon 2 of 2)	3385	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
127599	chr2	42878671	42879030	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-86267	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
20056	chr1	185565501	185566030	+	0	NA	intron (NR_110793, intron 2 of 3)	intron (NR_110793, intron 2 of 3)	62723	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
111320	chr19	3621871	3622030	+	0	NA	intron (NM_021231, intron 2 of 10)	intron (NM_021231, intron 2 of 10)	4840	NM_001080543	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
125360	chr2	11105601	11105800	+	0	NA	intron (NR_040080, intron 7 of 8)	intron (NR_040080, intron 7 of 8)	26476	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
3602	chr1	16242551	16243380	+	0	NA	Intergenic	Intergenic	-5782	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
17962	chr1	160432451	160433250	+	0	NA	Intergenic	Intergenic	32286	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
223341	chr8	143837301	143838050	+	0	NA	TTS (NR_106904)	TTS (NR_106904)	141	NR_106904	102466748		NR_106904	ENSG00000284142	MIR6845	hsa-mir-6845	microRNA 6845	ncRNA
238541	chrX	153763071	153763230	+	0	NA	Intergenic	MIR|SINE|MIR	-1046	NM_001163257	5365		NM_005393	ENSG00000198753	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
189276	chr5	172078001	172078200	+	0	NA	intron (NM_005990, intron 12 of 18)	intron (NM_005990, intron 12 of 18)	-71462	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
61516	chr13	57147451	57147750	+	0	NA	5' UTR (NM_001130404, exon 1 of 3).4	5' UTR (NM_001130404, exon 1 of 3).4	112	NM_198441	122183		NM_198441	ENSG00000204919	PRR20A	PRR20|PRR20B|PRR20C|PRR20D|PRR20E	proline rich 20A	protein-coding
39088	chr11	48006601	48008300	+	0	NA	intron (NM_002843, intron 1 of 24)	AluSz6|SINE|Alu	26891	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
62112	chr13	95300651	95302080	+	0	NA	promoter-TSS (NM_005845)	promoter-TSS (NM_005845)	86	NM_001105515	10257		NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4 (PEL blood group)	protein-coding
120822	chr19	45489201	45490000	+	0	NA	intron (NM_206900, intron 4 of 9)	intron (NM_206900, intron 4 of 9)	3653	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
90544	chr17	1497071	1497480	+	0	NA	intron (NM_016532, intron 8 of 11)	AluJb|SINE|Alu	-4589	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
119914	chr19	41646501	41646800	+	0	NA	Intergenic	Intergenic	-19576	NM_001362493	1089		NM_001817	ENSG00000105352	CEACAM4	CGM7|CGM7_HUMAN|NCA	CEA cell adhesion molecule 4	protein-coding
159994	chr3	18351101	18351500	+	0	NA	intron (NM_001322873, intron 10 of 10)	intron (NM_001322873, intron 10 of 10)	74039	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
177485	chr4	113908901	113909400	+	0	NA	intron (NM_001354211, intron 4 of 6)	L2|LINE|L2	70497	NM_001354210	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
88734	chr16	86315471	86316230	+	0	NA	Intergenic	AluSz6|SINE|Alu	29419	NR_038438	146513		NR_038438	ENSG00000268532	LINC02135	-	long intergenic non-protein coding RNA 2135	ncRNA
42902	chr11	73379371	73379730	+	0	NA	intron (NM_032871, intron 1 of 10)	MIRc|SINE|MIR	2882	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
68849	chr14	91293151	91294480	+	0	NA	intron (NM_001080414, intron 23 of 29)	intron (NM_001080414, intron 23 of 29)	-39935	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
90052	chr16	89927771	89928430	+	0	NA	intron (NM_006086, intron 1 of 3)	AluJb|SINE|Alu	4758	NM_006086	10381		NM_006086	ENSG00000258947	TUBB3	CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4	tubulin beta 3 class III	protein-coding
24956	chr10	1897321	1897630	+	0	NA	Intergenic	Intergenic	116873	NR_040253	282980		NR_040253		LINC00700	-	long intergenic non-protein coding RNA 700	ncRNA
129611	chr2	70105871	70106300	+	0	NA	Intergenic	AluSp|SINE|Alu	18608	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
156546	chr22	41433121	41433730	+	0	NA	TTS (NM_016272)	TTS (NM_016272)	13376	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
36253	chr11	3770901	3771100	+	0	NA	intron (NM_001365128, intron 7 of 32)	AluSz|SINE|Alu	26546	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
84487	chr16	30487651	30487950	+	0	NA	intron (NM_002209, intron 9 of 30)	AluSx|SINE|Alu	15058	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
177618	chr4	121165401	121165600	+	0	NA	intron (NM_001128843, intron 3 of 12)	intron (NM_001128843, intron 3 of 12)	-1179	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
64391	chr14	24159701	24159980	+	0	NA	intron (NM_001310332, intron 18 of 20).2	intron (NM_001310332, intron 18 of 20).2	-1425	NM_001385402	10379		NM_006084	ENSG00000213928	IRF9	IRF-9|ISGF3|ISGF3G|p48	interferon regulatory factor 9	protein-coding
42371	chr11	68798221	68798550	+	0	NA	intron (NM_001031847, intron 6 of 18)	intron (NM_001031847, intron 6 of 18)	43531	NM_001876	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
10720	chr1	75790071	75790250	+	0	NA	TTS (NR_002748)	TTS (NR_002748)	683	NR_002748	26804		NR_002748	ENSG00000201487	SNORD45B	RNU45B|U45b	small nucleolar RNA, C/D box 45B	snoRNA
535	chr1	1230371	1230530	+	0	NA	intron (NM_016547, intron 1 of 6)	intron (NM_016547, intron 1 of 6)	1551	NM_016176	51150		NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
37456	chr11	18245501	18245700	+	0	NA	intron (NM_001385673, intron 1 of 1)	intron (NM_001385673, intron 1 of 1)	3068	NM_030754	6289		NM_030754	ENSG00000134339	SAA2	SAA|SAA1	serum amyloid A2	protein-coding
25494	chr10	7033001	7033380	+	0	NA	Intergenic	Intergenic	153594	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
38397	chr11	44934851	44935350	+	0	NA	intron (NM_006034, intron 6 of 6)	intron (NM_006034, intron 6 of 6)	15060	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
158355	chr22	50463301	50463530	+	0	NA	exon (NM_001365819, exon 16 of 40)	exon (NM_001365819, exon 16 of 40)	11620	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
197941	chr6	89885071	89885230	+	0	NA	Intergenic	Intergenic	-9319	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
73306	chr15	41888701	41889500	+	0	NA	intron (NM_016642, intron 4 of 67)	intron (NM_016642, intron 4 of 67)	-3677	NR_135681	105370792		NR_135681	ENSG00000174171	LOC105370792	-	uncharacterized LOC105370792	ncRNA
150903	chr21	44159071	44160530	+	0	NA	promoter-TSS (NR_146631).2	promoter-TSS (NR_146631).2	62	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
46383	chr11	126282071	126283950	+	0	NA	promoter-TSS (NM_148910)	promoter-TSS (NM_148910)	-77	NM_001318777	114609		NM_052887	ENSG00000150455	TIRAP	BACTS1|Mal|MyD88-2|wyatt	TIR domain containing adaptor protein	protein-coding
25608	chr10	8064851	8065170	+	0	NA	intron (NM_001002295, intron 4 of 5)	intron (NM_001002295, intron 4 of 5)	10322	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
126019	chr2	25335751	25336400	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	5850	NM_022552	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
173453	chr4	8407851	8408150	+	0	NA	intron (NM_001375787, intron 6 of 17)	intron (NM_001375787, intron 6 of 17)	20448	NM_001375787	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
40081	chr11	62778421	62778880	+	0	NA	intron (NM_006473, intron 5 of 10)	intron (NM_006473, intron 5 of 10)	7254	NM_006473	10629		NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
123077	chr19	51381871	51382230	+	0	NA	intron (NM_001161748, intron 3 of 4)	MER21C|LTR|ERVL	5924	NM_030657	3982		NM_030657	ENSG00000105370	LIM2	CTRCT19|MP17|MP19	lens intrinsic membrane protein 2	protein-coding
134741	chr2	144607751	144608050	+	0	NA	Intergenic	Intergenic	-60067	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
208240	chr7	65448951	65449050	+	0	NA	Intergenic	Intergenic	75145	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
62772	chr13	108307001	108307200	+	0	NA	3' UTR (NM_001145645, exon 5 of 5)	3' UTR (NM_001145645, exon 5 of 5)	37382	NM_006573	10673		NM_006573	ENSG00000102524	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4	TNF superfamily member 13b	protein-coding
44792	chr11	113305601	113306130	+	0	NA	Intergenic	Intergenic	-8718	NR_165392	54970		NM_017868	ENSG00000149292	TTC12	CILD45|TPARM	tetratricopeptide repeat domain 12	protein-coding
207829	chr7	50329321	50330300	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	10762	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
215937	chr8	8331701	8332100	+	0	NA	intron (NR_163138, intron 5 of 6)	intron (NR_163138, intron 5 of 6)	54344	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
83875	chr16	28934521	28935330	+	0	NA	intron (NM_001385732, intron 3 of 13)	intron (NM_001385732, intron 3 of 13)	2954	NR_169755	930		NM_001770	ENSG00000177455	CD19	B4|CVID3	CD19 molecule	protein-coding
137827	chr2	200466251	200467350	+	0	NA	intron (NM_001282743, intron 8 of 11)	intron (NM_001282743, intron 8 of 11)	43268	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
113405	chr19	9434971	9436010	+	0	NA	promoter-TSS (NM_001370387)	promoter-TSS (NM_001370387)	83	NM_001370384	10781		NM_006631	ENSG00000174652	ZNF266	HZF1	zinc finger protein 266	protein-coding
2232	chr1	8861321	8861580	+	0	NA	intron (NM_001428, intron 11 of 11)	intron (NM_001428, intron 11 of 11)	5140	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
150653	chr21	43416401	43417600	+	0	NA	exon (NM_001320643, exon 14 of 14).2	exon (NM_001320643, exon 14 of 14).2	10131	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
103722	chr17	78837221	78837900	+	0	NA	intron (NM_001385172, intron 2 of 21)	intron (NM_001385172, intron 2 of 21)	3254	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
47025	chr12	386701	387100	+	0	NA	intron (NM_001042603, intron 1 of 27)	intron (NM_001042603, intron 1 of 27)	2420	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
84764	chr16	30981221	30982050	+	0	NA	intron (NM_014712, intron 17 of 18)	AluSc|SINE|Alu	-3572	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
151556	chr21	46554351	46554450	+	0	NA	intron (NM_001353942, intron 26 of 37)	intron (NM_001353942, intron 26 of 37)	50682	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
136963	chr2	190410921	190411280	+	0	NA	intron (NM_001375986, intron 1 of 7)	intron (NM_001375986, intron 1 of 7)	2242	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
194487	chr6	33250771	33250930	+	0	NA	exon (NM_022553, exon 20 of 20)	exon (NM_022553, exon 20 of 20)	1314	NR_044997	414765		NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25	ncRNA
51517	chr12	52222071	52222300	+	0	NA	intron (NR_027358, intron 4 of 4)	LTR50|LTR|ERVL	-8602	NR_164130	283403		NM_001242696		LINC02874	C12orf80	long intergenic non-protein coding RNA 2874	ncRNA
89701	chr16	89399401	89400450	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-30993	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109012	chr18	79713501	79714300	+	0	NA	intron (NM_001318511, intron 7 of 11)	CpG	32470	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
226912	chr9	79570801	79572500	+	0	NA	promoter-TSS (NM_001282749)	promoter-TSS (NM_001282749)	-123	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
200592	chr6	136608171	136609050	+	0	NA	intron (NM_005923, intron 18 of 29)	L2a|LINE|L2	-20504	NR_125858	101928461		NR_125858	ENSG00000234263	MAP3K5-AS1	-	MAP3K5 antisense RNA 1	ncRNA
94537	chr17	29577851	29578150	+	0	NA	intron (NM_001085454, intron 10 of 20)	intron (NM_001085454, intron 10 of 20)	9299	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
79486	chr16	770351	770850	+	0	NA	TTS (NR_030384)	TTS (NR_030384)	417	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
117046	chr19	18939021	18939280	+	0	NA	promoter-TSS (NM_001145724)	promoter-TSS (NM_001145724)	-101	NM_001145724	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
44981	chr11	116926071	116926230	+	0	NA	intron (NM_001366687, intron 4 of 4)	intron (NM_001366687, intron 4 of 4)	-88200	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
226283	chr9	68317921	68318800	+	0	NA	Intergenic	SATR1|Satellite|Satellite	15493	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
27350	chr10	30696751	30696850	+	0	NA	intron (NR_036438, intron 2 of 9)	intron (NR_036438, intron 2 of 9)	4526	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
5721	chr1	26401271	26401430	+	0	NA	Intergenic	AluJr|SINE|Alu	-9467	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
175104	chr4	54234221	54234850	+	0	NA	intron (NM_001347830, intron 1 of 22)	intron (NM_001347830, intron 1 of 22)	575	NM_001347830	5156		NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
68919	chr14	91365471	91366200	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	51985	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
11210	chr1	88861671	88861830	+	0	NA	intron (NM_001514, intron 3 of 6)	AluJo|SINE|Alu	29817	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
154162	chr22	31288551	31288930	+	0	NA	intron (NM_001135911, intron 4 of 4)	intron (NM_001135911, intron 4 of 4)	3748	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
69477	chr14	95431201	95431500	+	0	NA	intron (NM_001363692, intron 17 of 17)	MIRb|SINE|MIR	69190	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
8254	chr1	39775571	39776280	+	0	NA	intron (NM_001720, intron 1 of 6)	L2c|LINE|L2	-4577	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
209919	chr7	92446271	92446430	+	0	NA	Intergenic	Intergenic	-1132	NR_052016	57798		NM_021167	ENSG00000157259	GATAD1	CMD2B|ODAG|RG083M05.2	GATA zinc finger domain containing 1	protein-coding
139917	chr2	230751121	230751950	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	37987	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
24620	chr1	246569221	246570480	+	0	NA	intron (NM_001139459, intron 1 of 8)	intron (NM_001139459, intron 1 of 8)	3394	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
77058	chr15	78876851	78877650	+	0	NA	intron (NM_001265604, intron 1 of 11)	AluSx|SINE|Alu	4261	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
48109	chr12	7755651	7755980	+	0	NA	Intergenic	Intergenic	-6274	NM_203503	170482		NM_130441	ENSG00000198178	CLEC4C	BDCA-2|BDCA2|CD303|CLECSF11|CLECSF7|DLEC|HECL|PRO34150	C-type lectin domain family 4 member C	protein-coding
150754	chr21	43778151	43778250	+	0	NA	Intergenic	Intergenic	-1892	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
164410	chr3	58491251	58492750	+	0	NA	promoter-TSS (NM_001128214)	promoter-TSS (NM_001128214)	-96	NM_001128214	200845		NM_153331	ENSG00000168301	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
190642	chr5	181228971	181229330	+	0	NA	intron (NM_201627, intron 1 of 7)	intron (NM_201627, intron 1 of 7)	5869	NR_045218	90933		NM_033549	ENSG00000146063	TRIM41	RINCK	tripartite motif containing 41	protein-coding
63797	chr14	21319951	21320380	+	0	NA	promoter-TSS (NM_001377951)	promoter-TSS (NM_001377951)	40	NM_001377951	57096		NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	RPGR interacting protein 1	protein-coding
140012	chr2	230985651	230986100	+	0	NA	non-coding (NR_033879, exon 6 of 6)	non-coding (NR_033879, exon 6 of 6)	10157	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
223274	chr8	143726351	143726650	+	0	NA	exon (NM_198488, exon 5 of 5)	exon (NM_198488, exon 5 of 5)	6653	NR_039810	100616318		NR_039810	ENSG00000265660	MIR4664	-	microRNA 4664	ncRNA
107844	chr18	54268881	54270580	+	0	NA	5' UTR (NM_001351615, exon 1 of 9)	5' UTR (NM_001351615, exon 1 of 9)	156	NM_001351614	11201		NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
122508	chr19	49589601	49590600	+	0	NA	intron (NM_000951, intron 6 of 6)	intron (NM_000951, intron 6 of 6)	-1082	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
82713	chr16	20874051	20875150	+	0	NA	intron (NM_173475, intron 1 of 2)	intron (NM_173475, intron 1 of 2)	-25282	NM_001369631	57149		NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
73937	chr15	51422651	51422750	+	0	NA	Intergenic	L1HS|LINE|L1	45454	NM_001330297	342035		NM_181789	ENSG00000186417	GLDN	CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112|UNC-122	gliomedin	protein-coding
86888	chr16	67996471	67996830	+	0	NA	intron (NM_022355, intron 1 of 10)	AluSp|SINE|Alu	-2359	NM_001324159	64174		NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
4630	chr1	22116571	22116930	+	0	NA	TTS (NM_030761)	TTS (NM_030761)	26347	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
130776	chr2	86840571	86841030	+	0	NA	3' UTR (NM_004931, exon 6 of 6)	3' UTR (NM_004931, exon 6 of 6)	-21025	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
129367	chr2	68784851	68785300	+	0	NA	intron (NM_001166277, intron 3 of 9)	L2a|LINE|L2	10165	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
96650	chr17	40615171	40615980	+	0	NA	Intergenic	Intergenic	32243	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
169809	chr3	177057751	177058280	+	0	NA	intron (NM_001374330, intron 2 of 14)	intron (NM_001374330, intron 2 of 14)	138463	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
22142	chr1	212034871	212036630	+	0	NA	promoter-TSS (NR_037667)	promoter-TSS (NR_037667)	2	NM_016448	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
115278	chr19	14558851	14559280	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	13001	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
1315	chr1	2405121	2405480	+	0	NA	non-coding (NR_164636, exon 6 of 6)	non-coding (NR_164636, exon 6 of 6)	7264	NM_002617	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
221788	chr8	127960421	127961350	+	0	NA	TTS (NR_031610)	TTS (NR_031610)	252	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
24571	chr1	244972421	244972930	+	0	NA	intron (NR_026587, intron 1 of 5)	AluSc|SINE|Alu	-1806	NR_111907	101928068		NR_111907		LOC101928068	-	uncharacterized LOC101928068	ncRNA
180554	chr5	14667971	14669000	+	0	NA	intron (NM_138348, intron 1 of 6)	intron (NM_138348, intron 1 of 6)	3767	NM_138348	90268		NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM|IMD107	OTU deubiquitinase with linear linkage specificity	protein-coding
21546	chr1	206106521	206106980	+	0	NA	TTS (NM_000707)	TTS (NM_000707)	10638	NM_000707	553		NM_000707	ENSG00000198049	AVPR1B	AVPR3|V1bR|VPR3	arginine vasopressin receptor 1B	protein-coding
101875	chr17	74282501	74283600	+	0	NA	intron (NR_148379, intron 2 of 12)	(TTGTT)n|Simple_repeat|Simple_repeat	8816	NM_023036	64446		NM_023036	ENSG00000171595	DNAI2	CILD9|DIC2|oda6	dynein axonemal intermediate chain 2	protein-coding
86181	chr16	57828351	57828650	+	0	NA	Intergenic	Intergenic	17863	NM_001278081	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
196139	chr6	42425221	42425680	+	0	NA	intron (NM_033502, intron 2 of 17)	MIRb|SINE|MIR	26601	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
101340	chr17	66812451	66812950	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-22417	NM_001371476	27091		NM_014404	ENSG00000075429	CACNG5	-	calcium voltage-gated channel auxiliary subunit gamma 5	protein-coding
170538	chr3	186717871	186718180	+	0	NA	intron (NM_000893, intron 1 of 10)	(ACC)n|Simple_repeat|Simple_repeat	666	NM_000893	3827		NM_000893	ENSG00000113889	KNG1	BDK|BK|HAE6|HK|HMWK|KNG	kininogen 1	protein-coding
19532	chr1	177634351	177634450	+	0	NA	Intergenic	L1PA2|LINE|L1	-66124	NR_110722	101928778		NR_110722	ENSG00000236720	LINC01741	-	long intergenic non-protein coding RNA 1741	ncRNA
228718	chr9	109110321	109111450	+	0	NA	intron (NM_032012, intron 1 of 17)	L3|LINE|CR1	9062	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
43428	chr11	77589201	77590300	+	0	NA	promoter-TSS (NM_173039)	promoter-TSS (NM_173039)	115	NM_001363477	282679		NM_173039	ENSG00000178301	AQP11	AQPX1	aquaporin 11	protein-coding
236362	chrX	70661121	70661530	+	0	NA	intron (NM_031276, intron 16 of 29)	L1P1|LINE|L1	184970	NR_145758	109617015		NR_145758	ENSG00000280704	SNORD3E	-	small nucleolar RNA, C/D box 3E	snoRNA
175472	chr4	73066721	73067430	+	0	NA	intron (NM_001300729, intron 1 of 4)	intron (NM_001300729, intron 1 of 4)	2641	NM_173827	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
28819	chr10	62268151	62269250	+	0	NA	5' UTR (NM_145307, exon 1 of 12)	5' UTR (NM_145307, exon 1 of 12)	144	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
70664	chr14	103072071	103072230	+	0	NA	Intergenic	Intergenic	-12060	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
158429	chr22	50564651	50565100	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-1956	NM_001123225	644186		NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
72249	chr15	30540521	30540980	+	0	NA	Intergenic	L1MB2|LINE|L1	6285	NR_102756	100996255		NR_102756		LINC02256	-	long intergenic non-protein coding RNA 2256	ncRNA
208573	chr7	72834851	72835680	+	0	NA	intron (NR_024111, intron 3 of 3)	Ricksha_c|DNA|MULE-MuDR	5892	NR_024110	155370		NR_001588	ENSG00000291152	SBDSP1	SBDSP	SBDS pseudogene 1	pseudo
126313	chr2	27302971	27303930	+	0	NA	intron (NM_032546, intron 4 of 9)	AluSx3|SINE|Alu	4995	NM_003353	7349		NM_003353	ENSG00000163794	UCN	UCN1|UI|UROC	urocortin	protein-coding
18894	chr1	168243651	168244230	+	0	NA	3' UTR (NM_199344, exon 8 of 8)	3' UTR (NM_199344, exon 8 of 8)	3490	NR_026844	84832		NM_032746	ENSG00000293109	ANKRD36BP1	ANKRD26L1|ANKRD36BL1	ankyrin repeat domain 36B pseudogene 1	pseudo
131574	chr2	96820651	96820750	+	0	NA	intron (NM_199078, intron 1 of 6)	intron (NM_199078, intron 1 of 6)	4432	NM_017623	26505		NM_017623	ENSG00000168763	CNNM3	ACDP3	cyclin and CBS domain divalent metal cation transport mediator 3	protein-coding
188848	chr5	159205501	159205800	+	0	NA	intron (NM_001199380, intron 1 of 10)	intron (NM_001199380, intron 1 of 10)	1998	NM_001199382	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
78647	chr15	94272321	94273630	+	0	NA	intron (NR_169532, intron 1 of 23)	L2|LINE|L2	41414	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
91542	chr17	5001671	5002330	+	0	NA	intron (NM_006612, intron 5 of 22)	MIRb|SINE|MIR	4050	NM_006612	10749		NM_006612	ENSG00000129250	KIF1C	LTXS1|SATX2|SAX2|SPAX2|SPG58	kinesin family member 1C	protein-coding
138020	chr2	201277921	201278380	+	0	NA	intron (NR_111983, intron 7 of 8)	intron (NR_111983, intron 7 of 8)	17614	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
92146	chr17	7650251	7651630	+	0	NA	promoter-TSS (NM_001678)	promoter-TSS (NM_001678)	14	NM_001678	482		NM_001678	ENSG00000129244	ATP1B2	AMOG	ATPase Na+/K+ transporting subunit beta 2	protein-coding
81326	chr16	4734601	4735900	+	0	NA	promoter-TSS (NR_040252)	promoter-TSS (NR_040252)	713	NM_139170	146562		NM_139170	ENSG00000166246	DNAAF8	C16orf71|Daap1	dynein axonemal assembly factor 8	protein-coding
181756	chr5	50718571	50719080	+	0	NA	intron (NM_024615, intron 2 of 25)	L1MA4|LINE|L1	51411	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
199495	chr6	118659751	118660750	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	-8659	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
120926	chr19	45657571	45658130	+	0	NA	Intergenic	Intergenic	-10371	NM_001308418	2696		NM_000164	ENSG00000010310	GIPR	PGQTL2	gastric inhibitory polypeptide receptor	protein-coding
175565	chr4	75639321	75639600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8932	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
137545	chr2	197227071	197227430	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	29259	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
54857	chr12	95481101	95481950	+	0	NA	intron (NM_001317183, intron 2 of 9)	intron (NM_001317183, intron 2 of 9)	7373	NM_001317183	10988		NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
41619	chr11	66421051	66422200	+	0	NA	intron (NM_178864, intron 1 of 7)	CpG	590	NM_178864	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
31687	chr10	97500801	97501150	+	0	NA	intron (NM_024954, intron 1 of 2)	L2|LINE|L2	2051	NM_024954	80019		NM_024954	ENSG00000165886	UBTD1	-	ubiquitin domain containing 1	protein-coding
45611	chr11	118906171	118906330	+	0	NA	intron (NM_001378214, intron 4 of 8)	intron (NM_001378214, intron 4 of 8)	4292	NM_182557	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
73455	chr15	43440701	43441380	+	0	NA	intron (NM_001355001, intron 16 of 28)	intron (NM_001355001, intron 16 of 28)	52116	NM_001141980	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
8982	chr1	44644621	44644880	+	0	NA	exon (NM_001319956, exon 9 of 15)	exon (NM_001319956, exon 9 of 15)	12782	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
91054	chr17	2943651	2944650	+	0	NA	intron (NM_001100398, intron 3 of 23)	AluSc|SINE|Alu	21745	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
214679	chr7	150964621	150965250	+	0	NA	intron (NM_172056, intron 2 of 8)	intron (NM_172056, intron 2 of 8)	-9106	NM_172057	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
12300	chr1	100898101	100898550	+	0	NA	intron (NM_133496, intron 2 of 10)	intron (NM_133496, intron 2 of 10)	2235	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
39543	chr11	61110171	61111090	+	0	NA	intron (NM_014207, intron 1 of 10)	MIR|SINE|MIR	8141	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
205656	chr7	22831601	22832000	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-8951	NR_168014	54543		NM_019059	ENSG00000196683	TOMM7	GMPGS|TOM7	translocase of outer mitochondrial membrane 7	protein-coding
230623	chr9	128633501	128633700	+	0	NA	TTS (NM_003127)	TTS (NM_003127)	23250	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
146074	chr20	47505901	47506100	+	0	NA	intron (NM_181659, intron 1 of 22)	AluSz|SINE|Alu	4113	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
48936	chr12	12718751	12719330	+	0	NA	intron (NM_004064, intron 2 of 2)	intron (NM_004064, intron 2 of 2)	1672	NM_004064	1027		NM_004064	ENSG00000111276	CDKN1B	CDKN4|KIP1|MEN1B|MEN4|P27KIP1	cyclin dependent kinase inhibitor 1B	protein-coding
105150	chr17	82249271	82249730	+	0	NA	exon (NM_001893, exon 7 of 9)	exon (NM_001893, exon 7 of 9)	12832	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
210671	chr7	100538601	100540100	+	0	NA	exon (NM_006076, exon 1 of 12)	exon (NM_006076, exon 1 of 12)	147	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
231526	chr9	131428171	131428530	+	0	NA	intron (NM_013318, intron 1 of 31)	AluJr|SINE|Alu	34264	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
79260	chr16	467511	468400	+	0	NA	intron (NM_001370401, intron 2 of 14)	intron (NM_001370401, intron 2 of 14)	-6969	NM_001142272	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
129955	chr2	73930321	73931050	+	0	NA	intron (NR_134895, intron 1 of 2)	intron (NR_134895, intron 1 of 2)	3805	NM_080918	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
74698	chr15	62391671	62392350	+	0	NA	Intergenic	CpG	48981	NR_106733	102464834		NR_106733	ENSG00000275451	MIR6085	hsa-mir-6085	microRNA 6085	ncRNA
226698	chr9	75106801	75107200	+	0	NA	intron (NM_012383, intron 1 of 9)	AluSc|SINE|Alu	18486	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
33624	chr10	119642351	119643350	+	0	NA	Intergenic	MIRb|SINE|MIR	-8530	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
205906	chr7	25181871	25182030	+	0	NA	Intergenic	LTR45C|LTR|ERV1	-1596	NM_138811	136895		NM_138811	ENSG00000153790	SPMIP4	C7orf31	sperm microtubule inner protein 4	protein-coding
143083	chr20	21571071	21571450	+	0	NA	intron (NR_109880, intron 1 of 3)	MER20B|DNA|hAT-Charlie	1236	NR_109880	101929625		NR_109880		LINC01727	IRENA	long intergenic non-protein coding RNA 1727	ncRNA
154934	chr22	37223871	37224430	+	0	NA	Intergenic	Intergenic	-11673	NM_001051	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
148732	chr21	7140021	7140380	+	0	NA	Intergenic	Intergenic	75774	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
79295	chr16	543471	543630	+	0	NA	TTS (NR_036137)	TTS (NR_036137)	273	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
220974	chr8	115409951	115410250	+	0	NA	3' UTR (NM_001330599, exon 6 of 6)	3' UTR (NM_001330599, exon 6 of 6)	257913	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
132745	chr2	109609651	109610380	+	0	NA	intron (NM_001321501, intron 1 of 9)	intron (NM_001321501, intron 1 of 9)	3652	NM_001321515	151011		NM_144710	ENSG00000186522	SEPTIN10	SEPT10|Septin-10	septin 10	protein-coding
117079	chr19	19083951	19084050	+	0	NA	intron (NM_178526, intron 1 of 7)	intron (NM_178526, intron 1 of 7)	20006	NM_178526	284439		NM_178526	ENSG00000181035	SLC25A42	MECREN	solute carrier family 25 member 42	protein-coding
129605	chr2	70096971	70097150	+	0	NA	Intergenic	AluY|SINE|Alu	9583	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
23519	chr1	229035251	229035750	+	0	NA	Intergenic	Intergenic	139301	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
175	chr1	634501	634900	+	0	NA	Intergenic	Intergenic	-2015	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
133594	chr2	121718451	121719150	+	0	NA	intron (NR_037857, intron 3 of 3)	intron (NR_037857, intron 3 of 3)	18075	NM_032390	84365		NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
128394	chr2	55053451	55053550	+	0	NA	intron (NM_001321904, intron 2 of 9)	AluSq2|SINE|Alu	-2228	NM_001321859	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
129861	chr2	72992971	72993680	+	0	NA	intron (NM_001371737, intron 10 of 14)	intron (NM_001371737, intron 10 of 14)	65847	NM_001330407	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
17796	chr1	159801301	159801700	+	0	NA	promoter-TSS (NM_001004310)	promoter-TSS (NM_001004310)	-860	NM_001004310	343413		NM_001004310	ENSG00000181036	FCRL6	FcRH6	Fc receptor like 6	protein-coding
13594	chr1	116352371	116352980	+	0	NA	Intergenic	L1MB3|LINE|L1	-20569	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
153203	chr22	23856871	23858630	+	0	NA	promoter-TSS (NM_001024939)	promoter-TSS (NM_001024939)	-125	NM_001024939	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
85555	chr16	53435101	53435980	+	0	NA	promoter-TSS (NM_001323611)	promoter-TSS (NM_001323611)	-79	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
135848	chr2	170816751	170817480	+	0	NA	intron (NM_013445, intron 1 of 6)	CpG	228	NM_000817	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
177868	chr4	128552921	128553680	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	125284	NR_125882	100507487		NR_125882	ENSG00000251432	LINC02615	-	long intergenic non-protein coding RNA 2615	ncRNA
185020	chr5	115522921	115523180	+	0	NA	3' UTR (NM_020177, exon 3 of 3)	3' UTR (NM_020177, exon 3 of 3)	21725	NM_020177	56929		NM_020177	ENSG00000145780	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog C	protein-coding
103895	chr17	79800571	79801530	+	0	NA	Intergenic	CpG-11773	-3973	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
230724	chr9	128816751	128816850	+	0	NA	Intergenic	AluSx|SINE|Alu	-1700	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
179701	chr4	190121471	190121650	+	0	NA	Intergenic	TAR1|Satellite|telo	-52214	NM_001293798	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
1460	chr1	2664401	2664800	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-31584	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
66499	chr14	61700201	61700930	+	0	NA	intron (NM_001243084, intron 1 of 14)	L1MB2|LINE|L1	2943	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
47360	chr12	2135871	2136030	+	0	NA	intron (NM_199460, intron 3 of 49)	L1PA2|LINE|L1	82665	NM_199460	775		NM_000719	ENSG00000151067	CACNA1C	CACH2|CACN2|CACNA1C-IT2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|NEDHLSS|TS|TS. LQT8	calcium voltage-gated channel subunit alpha1 C	protein-coding
127708	chr2	43238021	43238480	+	0	NA	intron (NR_144316, intron 35 of 36)	L1MC|LINE|L1	11039	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
43646	chr11	85649271	85649630	+	0	NA	intron (NM_001244735, intron 1 of 3)	MER58C|DNA|hAT-Charlie	1483	NM_032273	84233		NM_032273	ENSG00000171202	TMEM126A	OPA7	transmembrane protein 126A	protein-coding
45040	chr11	117039221	117039530	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJo|SINE|Alu	59053	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
168022	chr3	136885221	136886350	+	0	NA	intron (NM_001291999, intron 1 of 3)	intron (NM_001291999, intron 1 of 3)	23577	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
2209	chr1	8702921	8703610	+	0	NA	intron (NM_001042681, intron 1 of 22)	CpG	114375	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
202448	chr6	158031001	158032080	+	0	NA	intron (NM_003898, intron 3 of 26)	intron (NM_003898, intron 3 of 26)	14447	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
217972	chr8	38354971	38355130	+	0	NA	intron (NM_017778, intron 1 of 9)	intron (NM_017778, intron 1 of 9)	27221	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
195500	chr6	37176601	37176900	+	0	NA	Intergenic	AluJr4|SINE|Alu	6598	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
60503	chr13	41326751	41327050	+	0	NA	intron (NM_024561, intron 6 of 19)	L1MC1|LINE|L1	-14862	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
59038	chr13	20474221	20474480	+	0	NA	intron (NM_015974, intron 3 of 7)	intron (NM_015974, intron 3 of 7)	-40504	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
206055	chr7	27157101	27157300	+	0	NA	promoter-TSS (NM_006896)	promoter-TSS (NM_006896)	-525	NM_006896	3204		NM_006896	ENSG00000122592	HOXA7	ANTP|HOX1|HOX1.1|HOX1A	homeobox A7	protein-coding
147423	chr20	58894701	58894900	+	0	NA	intron (NR_132272, intron 1 of 3)	intron (NR_132272, intron 1 of 3)	2637	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
15913	chr1	151708421	151708680	+	0	NA	intron (NM_007185, intron 5 of 12)	L3|LINE|CR1	8253	NM_001172649	11189		NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP Elav-like family member 3	protein-coding
53962	chr12	72346451	72346550	+	0	NA	intron (NM_013381, intron 2 of 18)	intron (NM_013381, intron 2 of 18)	-72991	NR_026836	283392		NM_001025457		TRHDE-AS1	-	TRHDE antisense RNA 1	ncRNA
47395	chr12	2811101	2811480	+	0	NA	intron (NR_146318, intron 1 of 1)	AluY|SINE|Alu	-1378	NR_147202	55846		NM_018463	ENSG00000111203	ITFG2	FGGAP1|KICS3|MDS028	integrin alpha FG-GAP repeat containing 2	protein-coding
112177	chr19	5660701	5661080	+	0	NA	intron (NM_001320571, intron 12 of 18)	intron (NM_001320571, intron 12 of 18)	19348	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
48307	chr12	8996001	8996200	+	0	NA	intron (NM_005810, intron 3 of 4)	intron (NM_005810, intron 3 of 4)	6475	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
214646	chr7	150753051	150753350	+	0	NA	Intergenic	Intergenic	15852	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
199213	chr6	111799501	111800430	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-40048	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
221294	chr8	122994921	122995780	+	0	NA	Intergenic	Intergenic	30422	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
177896	chr4	128917751	128918300	+	0	NA	intron (NM_144643, intron 18 of 20)	intron (NM_144643, intron 18 of 20)	106181	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
114140	chr19	11257901	11258100	+	0	NA	intron (NM_020812, intron 1 of 47)	L1ME2|LINE|L1	4524	NM_001367830	57572		NM_020812	ENSG00000130158	DOCK6	AOS2|ZIR1	dedicator of cytokinesis 6	protein-coding
81096	chr16	4358371	4358550	+	0	NA	exon (NM_001201472, exon 24 of 28).2	exon (NM_001201472, exon 24 of 28).2	-7139	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
32823	chr10	109978401	109978830	+	0	NA	intron (NR_038943, intron 2 of 4)	intron (NR_038943, intron 2 of 4)	-17758	NM_001320591	120		NM_001121	ENSG00000148700	ADD3	ADDL|CPSQ3	adducin 3	protein-coding
199982	chr6	127989951	127990500	+	0	NA	intron (NM_001291981, intron 24 of 32).2	L2a|LINE|L2	-37640	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
168944	chr3	152369021	152369700	+	0	NA	intron (NM_001376837, intron 2 of 9)	L1PA7|LINE|L1	-28370	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
80798	chr16	3286171	3286530	+	0	NA	intron (NM_005741, intron 4 of 5)	intron (NM_005741, intron 4 of 5)	2859	NM_005741	10127		NM_005741	ENSG00000006194	ZNF263	FPM315|ZKSCAN12|ZSCAN44	zinc finger protein 263	protein-coding
32992	chr10	110528851	110529300	+	0	NA	Intergenic	Intergenic	31168	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
238459	chrX	152958421	152959380	+	0	NA	intron (NM_001178110, intron 14 of 20)	CpG	17229	NM_001178115	7739		NM_007150	ENSG00000147394	ZNF185	SCELL	zinc finger protein 185 with LIM domain	protein-coding
108457	chr18	70464851	70465150	+	0	NA	Intergenic	Intergenic	-80409	NR_110764	101060542		NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
123226	chr19	52896201	52896400	+	0	NA	intron (NM_001351775, intron 1 of 5)	AluSx1|SINE|Alu	1335	NM_001351774	162967		NM_207333	ENSG00000182986	ZNF320	ZFPL	zinc finger protein 320	protein-coding
61636	chr13	73835121	73835900	+	0	NA	intron (NM_007249, intron 4 of 7)	intron (NM_007249, intron 4 of 7)	271266	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
88575	chr16	85563401	85563600	+	0	NA	Intergenic	Intergenic	-47909	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
211025	chr7	102412301	102412950	+	0	NA	intron (NR_038967, intron 8 of 8)	intron (NR_038967, intron 8 of 8)	-6770	NR_031669	100313829		NR_031669	ENSG00000221510	MIR548O	MIRN548O	microRNA 548o	ncRNA
225065	chr9	33248571	33248930	+	0	NA	TTS (NM_014471)	TTS (NM_014471)	8583	NM_014471	27290		NM_014471	ENSG00000122711	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor Kazal type 4	protein-coding
224463	chr9	15512301	15512700	+	0	NA	Intergenic	Intergenic	-1481	NM_001128217	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
4087	chr1	19123771	19124530	+	0	NA	intron (NM_020765, intron 65 of 105)	LTR50|LTR|ERVL	86116	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
16055	chr1	153229451	153229550	+	0	NA	Intergenic	Intergenic	11916	NM_001195571	574414		NM_001195571	ENSG00000203783	PRR9	-	proline rich 9	protein-coding
179639	chr4	186203151	186203550	+	0	NA	intron (NM_207352, intron 7 of 10)	intron (NM_207352, intron 7 of 10)	11783	NM_207352	285440		NM_207352	ENSG00000145476	CYP4V2	BCD|CYP4AH1	cytochrome P450 family 4 subfamily V member 2	protein-coding
62252	chr13	98555601	98555800	+	0	NA	intron (NM_001286649, intron 1 of 9)	AluY|SINE|Alu	21407	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
165531	chr3	100603151	100603450	+	0	NA	Intergenic	Intergenic	-6301	NM_032787	84873		NM_032787	ENSG00000144820	ADGRG7	GPR128	adhesion G protein-coupled receptor G7	protein-coding
134412	chr2	142883221	142883300	+	0	NA	intron (NM_001199241, intron 2 of 14)	AluYe5|SINE|Alu	5596	NM_003937	8942		NM_003937	ENSG00000115919	KYNU	KYNUU|VCRL2	kynureninase	protein-coding
226666	chr9	75020421	75021080	+	0	NA	intron (NM_152420, intron 1 of 7)	intron (NM_152420, intron 1 of 7)	6401	NM_001320497	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
32781	chr10	104387371	104387680	+	0	NA	intron (NM_001008723, intron 9 of 17)	intron (NM_001008723, intron 9 of 17)	33692	NM_001008723	159686		NM_001008723	ENSG00000120051	CFAP58	C10orf80|CCDC147|SPGF49|bA127L20.4|bA127L20.5|bA554P13.1	cilia and flagella associated protein 58	protein-coding
126160	chr2	26344901	26347680	+	0	NA	promoter-TSS (NM_001321975)	promoter-TSS (NM_001321975)	147	NM_033505	85465		NM_033505	ENSG00000138018	SELENOI	EPT1|SELI|SEPI|SPG81	selenoprotein I	protein-coding
146938	chr20	51920551	51920850	+	0	NA	Intergenic	MIR|SINE|MIR	-57787	NR_110016	101927678		NR_110016	ENSG00000227964	LINC01429	-	long intergenic non-protein coding RNA 1429	ncRNA
55882	chr12	109634671	109635490	+	0	NA	Intergenic	(CAC)n|Simple_repeat|Simple_repeat	61286	NM_001114185	4598		NM_000431	ENSG00000110921	MVK	LRBP|MK|MVLK|POROK3	mevalonate kinase	protein-coding
14683	chr1	145849121	145849680	+	0	NA	TTS (NM_001012758)	TTS (NM_001012758)	1245	NR_106794	102466191		NR_106794	ENSG00000278549	MIR6736	hsa-mir-6736	microRNA 6736	ncRNA
165816	chr3	105823301	105823800	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	44041	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
196267	chr6	42938371	42938530	+	0	NA	intron (NM_006586, intron 5 of 5)	intron (NM_006586, intron 5 of 5)	8970	NR_134891	107080644		NM_001318856		CNPY3-GNMT	-	CNPY3-GNMT readthrough	protein-coding
7664	chr1	35709401	35709600	+	0	NA	Intergenic	Intergenic	7411	NM_001348691	127703		NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
93207	chr17	17822351	17822780	+	0	NA	intron (NM_004176, intron 1 of 18)	intron (NM_004176, intron 1 of 18)	1065	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
220038	chr8	91527601	91527830	+	0	NA	Intergenic	L1HS|LINE|L1	278396	NM_052832	115111		NM_052832	ENSG00000147606	SLC26A7	SUT2	solute carrier family 26 member 7	protein-coding
117373	chr19	19577821	19578280	+	0	NA	intron (NM_025245, intron 2 of 7)	AluSz|SINE|Alu	39785	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
216443	chr8	19494371	19494730	+	0	NA	intron (NR_148900, intron 3 of 9)	L2b|LINE|L2	107995	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
121097	chr19	45919571	45919930	+	0	NA	Intergenic	Intergenic	-4972	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
6058	chr1	27139521	27139780	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	15475	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
3971	chr1	18819151	18819450	+	0	NA	Intergenic	L2b|LINE|L2	40360	NM_152232	80834		NM_152232	ENSG00000179002	TAS1R2	GPR71|T1R2|TR2	taste 1 receptor member 2	protein-coding
77126	chr15	79283571	79283830	+	0	NA	non-coding (NR_038997, exon 1 of 2)	non-coding (NR_038997, exon 1 of 2)	245	NR_038997	729911		NR_038997	ENSG00000259234	ANKRD34C-AS1	-	ANKRD34C antisense RNA 1	ncRNA
56940	chr12	120468271	120470350	+	0	NA	promoter-TSS (NM_001037494)	promoter-TSS (NM_001037494)	438	NM_003769	8683		NM_003769	ENSG00000111786	SRSF9	SFRS9|SRp30c	serine and arginine rich splicing factor 9	protein-coding
200747	chr6	137793971	137794530	+	0	NA	Intergenic	Intergenic	-55213	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
97229	chr17	42822801	42823000	+	0	NA	TTS (NR_106839)	TTS (NR_106839)	979	NM_001313999	8678		NM_003766	ENSG00000126581	BECN1	ATG6|VPS30|beclin1	beclin 1	protein-coding
62434	chr13	99316501	99317050	+	0	NA	intron (NR_026644, intron 5 of 8)	MIR|SINE|MIR	-9376	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
137321	chr2	196070371	196070730	+	0	NA	Intergenic	AluY|SINE|Alu	-1713	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
130749	chr2	86807221	86808000	+	0	NA	non-coding (NR_168479, exon 1 of 3)	non-coding (NR_168479, exon 1 of 3)	432	NR_168479	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
154078	chr22	30763801	30764200	+	0	NA	promoter-TSS (NM_001282740)	promoter-TSS (NM_001282740)	-253	NM_001282740	23762		NM_030758	ENSG00000184792	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
28443	chr10	48800101	48800500	+	0	NA	intron (NM_001370153, intron 24 of 28)	intron (NM_001370153, intron 24 of 28)	114837	NM_020945	57705		NM_020945	ENSG00000128815	WDFY4	C10orf64	WDFY family member 4	protein-coding
214990	chr7	152158651	152159280	+	0	NA	exon (NM_170606, exon 44 of 59)	exon (NM_170606, exon 44 of 59)	83928	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
143389	chr20	29081071	29081230	+	0	NA	intron (NR_132316, intron 1 of 5)	intron (NR_132316, intron 1 of 5)	760	NR_132316	102723316		NR_132316		FRG1DP	-	FSHD region gene 1 family member D, pseudogene	pseudo
36113	chr11	3089451	3089780	+	0	NA	intron (NM_145638, intron 20 of 20)	intron (NM_145638, intron 20 of 20)	-32192	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
210358	chr7	99576901	99577100	+	0	NA	TTS (NM_001085368)	TTS (NM_001085368)	18166	NM_001363334	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
33977	chr10	124657621	124658500	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-45968	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
177437	chr4	112633351	112633930	+	0	NA	intron (NM_018392, intron 1 of 27)	intron (NM_018392, intron 1 of 27)	3269	NM_018392	55345		NM_018392	ENSG00000138658	ZGRF1	C4orf21	zinc finger GRF-type containing 1	protein-coding
116203	chr19	17487171	17487730	+	0	NA	intron (NM_198580, intron 3 of 11)	intron (NM_198580, intron 3 of 11)	16926	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
185593	chr5	131404801	131405600	+	0	NA	Intergenic	Intergenic	141147	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
58501	chr12	132168901	132169100	+	0	NA	Intergenic	Intergenic	20695	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
169966	chr3	179258971	179259350	+	0	NA	non-coding (NR_028135, exon 1 of 5)	non-coding (NR_028135, exon 1 of 5)	731	NM_171829	27094		NM_014407	ENSG00000171121	KCNMB3	BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3	potassium calcium-activated channel subfamily M regulatory beta subunit 3	protein-coding
233340	chr9	137444901	137446280	+	0	NA	Intergenic	Intergenic	-4233	NM_001033113	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
228540	chr9	101396171	101396600	+	0	NA	intron (NM_019051, intron 1 of 1)	L1MA6|LINE|L1	2233	NM_019051	54534		NM_019051	ENSG00000136897	MRPL50	MRP-L50|mL50	mitochondrial ribosomal protein L50	protein-coding
106815	chr18	23990851	23991150	+	0	NA	Intergenic	Intergenic	-1887	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
143555	chr20	31604921	31606400	+	0	NA	exon (NM_002165, exon 1 of 2)	exon (NM_002165, exon 1 of 2)	371	NM_181353	3397		NM_002165	ENSG00000125968	ID1	ID|bHLHb24	inhibitor of DNA binding 1	protein-coding
112042	chr19	5132771	5133400	+	0	NA	intron (NM_015015, intron 13 of 22)	intron (NM_015015, intron 13 of 22)	163972	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
86687	chr16	67520751	67522780	+	0	NA	intron (NR_104656, intron 1 of 1)	intron (NR_104656, intron 1 of 1)	6980	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
217294	chr8	27371671	27372130	+	0	NA	intron (NM_173174, intron 6 of 35)	L2a|LINE|L2	46336	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
233875	chrX	1560471	1561030	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	-23565	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
207410	chr7	44325301	44326100	+	0	NA	promoter-TSS (NM_001293170)	promoter-TSS (NM_001293170)	-69	NM_172079	816		NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB|CaMKIIbeta|MRD54	calcium/calmodulin dependent protein kinase II beta	protein-coding
37275	chr11	14677301	14677700	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	33696	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
50210	chr12	46209901	46210300	+	0	NA	intron (NM_001278387, intron 6 of 17)	L2c|LINE|L2	56416	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
227025	chr9	83937621	83938100	+	0	NA	TTS (NM_001317997)	TTS (NM_001317997)	-16316	NM_001271928	55582		NM_017576	ENSG00000165115	KIF27	-	kinesin family member 27	protein-coding
2035	chr1	7702351	7702800	+	0	NA	intron (NM_001349613, intron 1 of 11)	L2b|LINE|L2	-2161	NM_001349622	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
77313	chr15	82435701	82436120	+	0	NA	intron (NM_001291420, intron 6 of 7).2	intron (NM_001291420, intron 6 of 7).2	5127	NM_001291420	440295		NM_198181	ENSG00000197978	GOLGA6L9	GOLGA6L20	golgin A6 family like 9	protein-coding
139610	chr2	225031271	225031650	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	11008	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
239116	chrY	11296171	11296330	+	0	NA	Intergenic	Intergenic	1125340	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
188867	chr5	159337521	159338200	+	0	NA	intron (NR_037889, intron 2 of 4)	LTR8A|LTR|ERV1	6342	NR_037889	285626		NR_037889	ENSG00000249738	LOC285626	-	uncharacterized LOC285626	ncRNA
176255	chr4	86975951	86976250	+	0	NA	intron (NM_001166693, intron 2 of 20)	intron (NM_001166693, intron 2 of 20)	-30888	NM_001313959	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
36326	chr11	3873301	3873500	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluSp|SINE|Alu	17338	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
152119	chr22	19940801	19942040	+	0	NA	promoter-TSS (NM_001362828)	promoter-TSS (NM_001362828)	-352	NM_001362828	1312		NM_000754	ENSG00000093010	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
112199	chr19	5678151	5678900	+	0	NA	3' UTR (NM_001308240, exon 5 of 5)	3' UTR (NM_001308240, exon 5 of 5)	1713	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
80433	chr16	2642471	2643000	+	0	NA	non-coding (NR_024492, exon 1 of 1)	non-coding (NR_024492, exon 1 of 1)	3753	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
22218	chr1	212514651	212514750	+	0	NA	Intergenic	Intergenic	-30994	NR_125985	101929565		NR_125985	ENSG00000228067	LINC01740	-	long intergenic non-protein coding RNA 1740	ncRNA
97905	chr17	45127621	45128280	+	0	NA	intron (NM_133373, intron 1 of 14)	intron (NM_133373, intron 1 of 14)	4565	NM_133373	113026		NM_133373	ENSG00000161714	PLCD3	PLC-delta-3	phospholipase C delta 3	protein-coding
35189	chr11	792621	793250	+	0	NA	exon (NM_001191061, exon 6 of 10)	exon (NM_001191061, exon 6 of 10)	-2845	NM_016564	51286		NM_016564	ENSG00000184524	CEND1	BM88	cell cycle exit and neuronal differentiation 1	protein-coding
59255	chr13	24052671	24052930	+	0	NA	intron (NM_001286792, intron 3 of 14)	intron (NM_001286792, intron 3 of 14)	72998	NR_104595	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
45117	chr11	117148101	117148300	+	0	NA	intron (NR_110282, intron 1 of 2)	AluSx|SINE|Alu	3913	NM_002572	5049		NM_002572	ENSG00000168092	PAFAH1B2	HEL-S-303	platelet activating factor acetylhydrolase 1b catalytic subunit 2	protein-coding
212949	chr7	130944771	130944930	+	0	NA	non-coding (NR_109851, exon 6 of 6)	non-coding (NR_109851, exon 6 of 6)	31386	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
31181	chr10	91191121	91191750	+	0	NA	intron (NM_001257101, intron 1 of 9)	MER44B|DNA|TcMar-Tigger	28423	NM_001257101	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
46344	chr11	125623121	125623580	+	0	NA	TTS (NM_001278504)	TTS (NM_001278504)	-1786	NM_001244846	1111		NM_001274	ENSG00000149554	CHEK1	CHK1|OZEMA21	checkpoint kinase 1	protein-coding
57328	chr12	121690371	121691500	+	0	NA	Intergenic	AluY|SINE|Alu	-18291	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
164829	chr3	71009451	71009550	+	0	NA	intron (NM_001244810, intron 12 of 20)	intron (NM_001244810, intron 12 of 20)	55424	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
78848	chr15	100224371	100224730	+	0	NA	intron (NM_139057, intron 7 of 21)	intron (NM_139057, intron 7 of 21)	117425	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
220292	chr8	98042901	98043400	+	0	NA	promoter-TSS (NR_002581)	promoter-TSS (NR_002581)	-933	NR_002581	26775		NR_002581	ENSG00000207067	SNORA72	RNU72|U72	small nucleolar RNA, H/ACA box 72	snoRNA
209780	chr7	87416701	87417000	+	0	NA	intron (NM_018850, intron 21 of 26)	intron (NM_018850, intron 21 of 26)	58830	NM_018849	5244		NM_000443	ENSG00000005471	ABCB4	ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3	ATP binding cassette subfamily B member 4	protein-coding
223618	chr8	144318721	144319930	+	0	NA	intron (NM_012079, intron 2 of 16)	(AACC)n|Simple_repeat|Simple_repeat	-2010	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
206583	chr7	35694311	35696330	+	0	NA	promoter-TSS (NM_022373)	promoter-TSS (NM_022373)	114	NR_136255	101930085		NR_136255	ENSG00000271122	HERPUD2-AS1	-	HERPUD2 antisense RNA 1	ncRNA
115136	chr19	14385401	14386000	+	0	NA	intron (NM_001025160, intron 1 of 18)	intron (NM_001025160, intron 1 of 18)	4256	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
78141	chr15	90397321	90398050	+	0	NA	intron (NM_003870, intron 2 of 37)	AluYj4|SINE|Alu	9443	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
31888	chr10	100276501	100277030	+	0	NA	intron (NM_173809, intron 4 of 4)	SVA_D|Retroposon|SVA	-9127	NM_001303407	55280		NM_018294	ENSG00000095485	CWF19L1	C19L1|SCAR17|hDrn1	CWF19 like cell cycle control factor 1	protein-coding
177341	chr4	110005451	110006000	+	0	NA	intron (NM_001357021, intron 19 of 19)	intron (NM_001357021, intron 19 of 19)	92842	NM_001178131	1950		NM_001963	ENSG00000138798	EGF	HOMG4|URG	epidermal growth factor	protein-coding
170729	chr3	188158921	188159350	+	0	NA	intron (NM_001375462, intron 1 of 11)	intron (NM_001375462, intron 1 of 11)	4978	NM_001375463	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
135361	chr2	160413571	160413730	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	-5768	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
49213	chr12	15912251	15912350	+	0	NA	intron (NM_001300779, intron 1 of 7)	SVA_E|Retroposon|SVA	968	NM_015954	51071		NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
215630	chr8	116451	116630	+	0	NA	Intergenic	Intergenic	-3438	NR_168395	101927506		NR_168395		LOC101927506	-	uncharacterized LOC101927506	ncRNA
160243	chr3	23974371	23974530	+	0	NA	intron (NR_110524, intron 8 of 8)	Tigger3b|DNA|TcMar-Tigger	-27888	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
65907	chr14	55279101	55279550	+	0	NA	intron (NM_152231, intron 1 of 1)	Charlie4a|DNA|hAT-Charlie	7171	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
54658	chr12	93297071	93297230	+	0	NA	intron (NR_040096, intron 2 of 4)	MER39|LTR|ERV1	80586	NR_040096	643339		NR_040096		LOC643339	-	uncharacterized LOC643339	ncRNA
129348	chr2	68761101	68761500	+	0	NA	intron (NM_001364821, intron 1 of 10)	L1MB3|LINE|L1	-13610	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
223485	chr8	144058501	144058700	+	0	NA	exon (NM_017570, exon 6 of 27)	exon (NM_017570, exon 6 of 27)	-1220	NR_106905	102465509		NR_106905	ENSG00000277888	MIR6846	hsa-mir-6846	microRNA 6846	ncRNA
85448	chr16	50589101	50589600	+	0	NA	intron (NM_033119, intron 3 of 9)	intron (NM_033119, intron 3 of 9)	40954	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
26221	chr10	14579921	14580600	+	0	NA	intron (NM_001282695, intron 2 of 5)	AluYm1|SINE|Alu	-7885	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
203574	chr7	910141	911400	+	0	NA	intron (NM_006869, intron 4 of 10)	intron (NM_006869, intron 4 of 10)	10119	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
160327	chr3	27655501	27655700	+	0	NA	Intergenic	Intergenic	66723	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
117097	chr19	19171901	19172100	+	0	NA	intron (NR_027308, intron 5 of 11)	intron (NR_027308, intron 5 of 11)	-1737	NM_001367282	100271849		NM_001145785	ENSG00000213999	MEF2B	RSRFR2	myocyte enhancer factor 2B	protein-coding
329	chr1	990401	990600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8407	NM_001291366	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
121373	chr19	46858301	46859050	+	0	NA	Intergenic	AluSz|SINE|Alu	-2322	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
157017	chr22	42536971	42537680	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	-16631	NR_104301	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
10517	chr1	66931621	66932400	+	0	NA	intron (NM_001077704, intron 1 of 13)	intron (NM_001077704, intron 1 of 13)	1754	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
136514	chr2	177246001	177246200	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	9910	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
158810	chr3	9726851	9727850	+	0	NA	TTS (NM_001308388)	TTS (NM_001308388)	-4379	NM_001319049	7862		NM_004634	ENSG00000156983	BRPF1	BR140|IDDDFP	bromodomain and PHD finger containing 1	protein-coding
118890	chr19	38686521	38687350	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	39286	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
210945	chr7	101299621	101300680	+	0	NA	intron (NR_146480, intron 1 of 1)	L1M2|LINE|L1	537	NR_146480	101927721		NR_146480	ENSG00000232301	LNCPRESS1	-	lncRNA p53 regulated and ESC associated 1	ncRNA
157384	chr22	44728601	44728900	+	0	NA	intron (NM_181334, intron 4 of 14)	intron (NM_181334, intron 4 of 14)	-23808	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
188438	chr5	154447431	154448650	+	0	NA	intron (NM_001131063, intron 1 of 2)	AluSz|SINE|Alu	2043	NM_001131062	79685		NM_024632	ENSG00000164576	SAP30L	NS4ATP2	SAP30 like	protein-coding
181635	chr5	49601271	49602200	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	839553	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
25807	chr10	11190651	11191280	+	0	NA	intron (NM_001326346, intron 2 of 11)	L1MB3|LINE|L1	25935	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
102208	chr17	75189171	75189600	+	0	NA	Intergenic	L2a|LINE|L2	-6426	NM_006937	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
17261	chr1	156382801	156383680	+	0	NA	intron (NR_046115, intron 9 of 10)	intron (NR_046115, intron 9 of 10)	14029	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
94251	chr17	28686171	28686750	+	0	NA	intron (NM_003170, intron 20 of 36)	intron (NM_003170, intron 20 of 36)	23644	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
231722	chr9	131756671	131756830	+	0	NA	Intergenic	AluSx|SINE|Alu	-16674	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
141881	chr20	762171	762530	+	0	NA	intron (NM_001370085, intron 4 of 5)	intron (NM_001370085, intron 4 of 5)	6150	NM_033409	113278		NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
125911	chr2	24922571	24922930	+	0	NA	Intergenic	Intergenic	-2513	NM_001320613	109		NM_004036	ENSG00000138031	ADCY3	AC-III|AC3|BMIQ19	adenylate cyclase 3	protein-coding
34352	chr10	132202821	132203080	+	0	NA	intron (NM_006426, intron 12 of 13)	intron (NM_006426, intron 12 of 13)	16002	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
178454	chr4	148058521	148059050	+	0	NA	intron (NM_024605, intron 20 of 22)	intron (NM_024605, intron 20 of 22)	276190	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
236530	chrX	72107351	72108130	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	24175	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
121079	chr19	45884651	45884750	+	0	NA	exon (NM_015649, exon 1 of 1)	exon (NM_015649, exon 1 of 1)	1441	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
148536	chr20	64119821	64120850	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	-12770	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
82504	chr16	17439521	17439980	+	0	NA	intron (NM_022166, intron 1 of 11)	MER113|DNA|hAT-Charlie	31210	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
151880	chr22	18810321	18810580	+	0	NA	Intergenic	Intergenic	-18489	NR_003267	2679		NR_003267	ENSG00000197421	GGT3P	GGT3	gamma-glutamyltransferase 3 pseudogene	pseudo
220127	chr8	94722021	94722280	+	0	NA	intron (NM_181787, intron 1 of 18)	AluSx4|SINE|Alu	2250	NM_181787	286148		NM_181787	ENSG00000156162	DPY19L4	-	dpy-19 like 4	protein-coding
172725	chr4	2811771	2814300	+	0	NA	intron (NM_001145855, intron 1 of 12)	intron (NM_001145855, intron 1 of 12)	744	NM_001145855	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
160570	chr3	30696371	30696530	+	0	NA	Intergenic	Intergenic	89849	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
115614	chr19	16073751	16074730	+	0	NA	intron (NM_001367836, intron 1 of 8)	intron (NM_001367836, intron 1 of 8)	-2255	NM_001367837	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
155694	chr22	39082601	39082800	+	0	NA	non-coding (NR_146179, exon 3 of 3)	non-coding (NR_146179, exon 3 of 3)	5425	NM_001349438	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
37622	chr11	20356101	20356330	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-7470	NM_006410	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
148811	chr21	8254501	8255500	+	0	NA	intron (NR_003287, intron 1 of 2)	CpG-18247	-1780	NR_145821	106632260		NR_145821	ENSG00000278189	RNA5-8SN1	RNA5-8S4	RNA, 5.8S ribosomal N1	rRNA
122621	chr19	49810671	49810930	+	0	NA	intron (NM_025129, intron 5 of 10)	AluJr|SINE|Alu	2492	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
108622	chr18	76376101	76376300	+	0	NA	intron (NM_014643, intron 4 of 6)	intron (NM_014643, intron 4 of 6)	-115452	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
169998	chr3	179929151	179929330	+	0	NA	intron (NM_001349396, intron 1 of 13)	Tigger19a|DNA|TcMar-Tigger	29703	NR_110061	101928790		NR_110059	ENSG00000244302	PEX5L-AS2	-	PEX5L antisense RNA 2	ncRNA
98997	chr17	48746201	48746800	+	0	NA	Intergenic	Intergenic	-17750	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
107434	chr18	46211521	46212450	+	0	NA	intron (NM_145055, intron 1 of 4)	intron (NM_145055, intron 1 of 4)	37951	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
16989	chr1	155979411	155980300	+	0	NA	promoter-TSS (NM_001350112)	promoter-TSS (NM_001350112)	-295	NM_001350112	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
157230	chr22	43265371	43265530	+	0	NA	intron (NM_173050, intron 4 of 21)	intron (NM_173050, intron 4 of 21)	-10492	NR_134582	101927447		NR_134582	ENSG00000203527	SCUBE1-AS1	-	SCUBE1 antisense RNA 1	ncRNA
228273	chr9	98064751	98065250	+	0	NA	intron (NM_018946, intron 2 of 5)	intron (NM_018946, intron 2 of 5)	8268	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
187060	chr5	140112321	140112580	+	0	NA	Intergenic	Intergenic	-1659	NM_005859	5813		NM_005859	ENSG00000185129	PURA	MRD31|NEDRIHF|PUR-ALPHA|PUR1|PURALPHA	purine rich element binding protein A	protein-coding
9841	chr1	54223171	54223330	+	0	NA	intron (NM_001330602, intron 6 of 6)	intron (NM_001330602, intron 6 of 6)	-13193	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
83365	chr16	25109471	25109880	+	0	NA	intron (NR_120306, intron 1 of 2)	intron (NR_120306, intron 1 of 2)	1880	NR_120306	102723510		NR_120306		LCMT1-AS1	-	LCMT1 antisense RNA 1	ncRNA
111708	chr19	4304321	4305450	+	0	NA	intron (NM_024333, intron 1 of 12)	CpG	287	NM_024333	79187		NM_024333	ENSG00000105255	FSD1	GLFND|MIR1	fibronectin type III and SPRY domain containing 1	protein-coding
66563	chr14	63282821	63283480	+	0	NA	exon (NM_020663, exon 4 of 5)	exon (NM_020663, exon 4 of 5)	35785	NM_145171	122876		NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone subunit beta 5	protein-coding
53073	chr12	57725971	57726980	+	0	NA	3' UTR (NM_001122772, exon 19 of 19)	3' UTR (NM_001122772, exon 19 of 19)	235	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
212588	chr7	129009471	129009630	+	0	NA	intron (NR_167926, intron 5 of 21)	intron (NR_167926, intron 5 of 21)	45561	NM_001382222	23534		NM_012470	ENSG00000064419	TNPO3	IPO12|LGMD1F|LGMDD2|MTR10A|TRN-SR|TRN-SR2|TRNSR	transportin 3	protein-coding
42201	chr11	68003281	68004980	+	0	NA	promoter-TSS (NM_030930)	promoter-TSS (NM_030930)	-33	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
17592	chr1	156863071	156863950	+	0	NA	intron (NM_002529, intron 1 of 16)	(CTCCT)n|Simple_repeat|Simple_repeat	2631	NM_002529	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
175828	chr4	78057551	78058280	+	0	NA	5' UTR (NM_001166133, exon 1 of 42)	5' UTR (NM_001166133, exon 1 of 42)	345	NM_001166133	80144		NM_020875	ENSG00000138759	FRAS1	FRASRS1	Fraser extracellular matrix complex subunit 1	protein-coding
112924	chr19	7671201	7671800	+	0	NA	Intergenic	AluSz|SINE|Alu	2451	NM_001385727	56729		NM_020415	ENSG00000104918	RETN	ADSF|FIZZ3|RENT|RETN1|RSTN|XCP1	resistin	protein-coding
65336	chr14	50225821	50226280	+	0	NA	intron (NM_006939, intron 1 of 22)	L2a|LINE|L2	5528	NM_006939	6655		NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
93719	chr17	19511051	19511350	+	0	NA	Intergenic	Intergenic	-22654	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
57964	chr12	123910371	123911280	+	0	NA	intron (NM_207437, intron 58 of 77)	intron (NM_207437, intron 58 of 77)	61234	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
173188	chr4	6768871	6769630	+	0	NA	Intergenic	Intergenic	-13477	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
83390	chr16	27080951	27081050	+	0	NA	Intergenic	L2c|LINE|L2	14073	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
155793	chr22	39298271	39298650	+	0	NA	Intergenic	Intergenic	15451	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
115713	chr19	16218851	16219250	+	0	NA	intron (NM_001130524, intron 6 of 12)	L1MEf|LINE|L1	21139	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
144065	chr20	33676601	33676800	+	0	NA	3' UTR (NM_005225, exon 7 of 7)	3' UTR (NM_005225, exon 7 of 7)	-2272	NM_031232	63941		NM_031231	ENSG00000125967	NECAB3	APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5	N-terminal EF-hand calcium binding protein 3	protein-coding
145463	chr20	43720921	43721180	+	0	NA	Intergenic	MER52C|LTR|ERV1	5952	NM_001008901	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
16238	chr1	153949001	153949630	+	0	NA	exon (NM_181715, exon 12 of 14)	exon (NM_181715, exon 12 of 14)	-2597	NM_014856	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
110195	chr19	1687771	1688350	+	0	NA	Intergenic	Intergenic	-35445	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
150115	chr21	37460001	37460530	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	39966	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
221972	chr8	129985201	129985730	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	22988	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
147231	chr20	57405671	57405830	+	0	NA	intron (NM_001291780, intron 4 of 4)	intron (NM_001291780, intron 4 of 4)	-12694	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
53286	chr12	64392121	64392480	+	0	NA	Intergenic	AluSz|SINE|Alu	-1542	NM_001099676	115749		NM_001099676	ENSG00000185306	C12orf56	-	chromosome 12 open reading frame 56	protein-coding
135438	chr2	161173101	161173500	+	0	NA	intron (NM_001199135, intron 1 of 7)	intron (NM_001199135, intron 1 of 7)	12872	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
195557	chr6	37486651	37487350	+	0	NA	intron (NM_138493, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	12893	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
223992	chr9	2083451	2083750	+	0	NA	intron (NM_003070, intron 16 of 33)	intron (NM_003070, intron 16 of 33)	61655	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
187119	chr5	140412951	140413250	+	0	NA	intron (NM_020690, intron 1 of 35)	intron (NM_020690, intron 1 of 35)	11267	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
21742	chr1	206816871	206817450	+	0	NA	intron (NM_153758, intron 2 of 6)	LTR45C|LTR|ERV1	-11717	NM_013371	29949		NM_013371	ENSG00000142224	IL19	IL-10C|MDA1|NG.1|ZMDA1	interleukin 19	protein-coding
57098	chr12	121041551	121041850	+	0	NA	Intergenic	AluY|SINE|Alu	-2458	NM_198213	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
217788	chr8	33511901	33514000	+	0	NA	promoter-TSS (NR_003041)	promoter-TSS (NR_003041)	185	NM_001265581	80185		NM_025115	ENSG00000129696	TTI2	C8orf41|MRT39	TELO2 interacting protein 2	protein-coding
130572	chr2	85766171	85766430	+	0	NA	intron (NM_032827, intron 2 of 2)	intron (NM_032827, intron 2 of 2)	12309	NM_032827	84913		NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
184166	chr5	95759451	95759900	+	0	NA	intron (NM_014899, intron 6 of 11)	intron (NM_014899, intron 6 of 11)	-27573	NM_001349303	83890		NM_031952	ENSG00000145757	SPATA9	NYD-SP16	spermatogenesis associated 9	protein-coding
94948	chr17	32080971	32081330	+	0	NA	Intergenic	AluSx1|SINE|Alu	40814	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
200768	chr6	137834671	137834830	+	0	NA	intron (NR_049793, intron 3 of 3)	intron (NR_049793, intron 3 of 3)	-32509	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
95033	chr17	32489801	32490630	+	0	NA	3' UTR (NM_003885, exon 2 of 2)	3' UTR (NM_003885, exon 2 of 2)	3222	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
8868	chr1	43453071	43454200	+	0	NA	exon (NM_031207, exon 1 of 8)	exon (NM_031207, exon 1 of 8)	296	NM_031207	81888		NM_031207	ENSG00000178922	HYI	HT036	hydroxypyruvate isomerase (putative)	protein-coding
81113	chr16	4375901	4376980	+	0	NA	intron (NM_138440, intron 1 of 1)	intron (NM_138440, intron 1 of 1)	4592	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
49335	chr12	22045121	22045380	+	0	NA	promoter-TSS (NM_018686)	promoter-TSS (NM_018686)	-924	NR_135117	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
76604	chr15	75367701	75369350	+	0	NA	promoter-TSS (NM_006715)	promoter-TSS (NM_006715)	82	NM_006715	4123		NM_006715	ENSG00000140400	MAN2C1	CDDG2|MAN6A8|MANA|MANA1	mannosidase alpha class 2C member 1	protein-coding
196248	chr6	42898851	42899450	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-8329	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
202838	chr6	159736851	159737350	+	0	NA	intron (NM_001270531, intron 2 of 7)	AluJb|SINE|Alu	9594	NM_001270533	9589		NM_004906	ENSG00000146457	WTAP	Mum2	WT1 associated protein	protein-coding
163943	chr3	52798771	52799530	+	0	NA	intron (NM_002217, intron 7 of 21)	intron (NM_002217, intron 7 of 21)	4382	NM_002217	3699		NM_002217	ENSG00000162267	ITIH3	H3P|ITI-HC3|SHAP	inter-alpha-trypsin inhibitor heavy chain 3	protein-coding
20293	chr1	197142621	197142880	+	0	NA	exon (NM_001206846, exon 3 of 27)	exon (NM_001206846, exon 3 of 27)	3919	NM_018136	259266		NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	assembly factor for spindle microtubules	protein-coding
4036	chr1	18947671	18947830	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	8926	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
19736	chr1	181142371	181142900	+	0	NA	Intergenic	Intergenic	-31849	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
56442	chr12	113480071	113480330	+	0	NA	non-coding (NR_126425, exon 2 of 2)	non-coding (NR_126425, exon 2 of 2)	8197	NR_126425	104355219		NR_126425		LHX5-AS1	locus 4010|locus4010	LHX5 antisense RNA 1	ncRNA
212976	chr7	130974801	130975330	+	0	NA	intron (NR_109851, intron 4 of 5)	MSTA-int|LTR|ERVL-MaLR	61601	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
5372	chr1	25402901	25403550	+	0	NA	intron (NM_138618, intron 2 of 8)	MIRb|SINE|MIR	17689	NM_138618	6006		NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHCe(152N)|RHE|RHIXB|RHNA|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII|SLC42A4	Rh blood group CcEe antigens	protein-coding
178040	chr4	139564471	139564700	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-7816	NM_001306199	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
60714	chr13	44141501	44142750	+	0	NA	promoter-TSS (NR_104064)	promoter-TSS (NR_104064)	-203	NR_104064	101929212		NR_104064	ENSG00000227258	SMIM2-AS1	C13orf44-AS1|C3orf81-AS1	SMIM2 antisense RNA 1	ncRNA
141387	chr2	240818421	240818850	+	0	NA	intron (NM_001379653, intron 1 of 46)	intron (NM_001379653, intron 1 of 46)	642	NM_001379651	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
39584	chr11	61225871	61226030	+	0	NA	intron (NM_001079808, intron 3 of 8)	intron (NM_001079808, intron 3 of 8)	3601	NM_001079808	643847		NM_001079808	ENSG00000229183	PGA4	-	pepsinogen A4	protein-coding
209852	chr7	90262471	90262700	+	0	NA	intron (NM_001160138, intron 4 of 22)	intron (NM_001160138, intron 4 of 22)	17411	NM_001363438	79846		NM_024788	ENSG00000105792	CFAP69	C7orf63|FAP69|SPGF24	cilia and flagella associated protein 69	protein-coding
32490	chr10	102681651	102681950	+	0	NA	intron (NM_004311, intron 5 of 5)	intron (NM_004311, intron 5 of 5)	32597	NM_004311	403		NM_004311	ENSG00000138175	ARL3	ARFL3|JBTS35|RP83	ADP ribosylation factor like GTPase 3	protein-coding
94771	chr17	30832871	30833030	+	0	NA	intron (NM_024857, intron 1 of 22)	intron (NM_024857, intron 1 of 22)	984	NM_024857	79915		NM_024857	ENSG00000176208	ATAD5	C17orf41|ELG1|FRAG1	ATPase family AAA domain containing 5	protein-coding
90048	chr16	89920551	89922750	+	0	NA	promoter-TSS (NM_001197181)	promoter-TSS (NM_001197181)	-275	NM_001197181	10381		NM_006086	ENSG00000258947	TUBB3	CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4	tubulin beta 3 class III	protein-coding
91746	chr17	6752971	6754130	+	0	NA	Intergenic	Intergenic	-1897	NM_001353135	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
219418	chr8	71406751	71406850	+	0	NA	intron (NM_001370333, intron 2 of 18)	L1PA2|LINE|L1	-44731	NM_001288575	2138		NM_000503	ENSG00000104313	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding
182017	chr5	55384201	55384400	+	0	NA	intron (NM_015360, intron 18 of 26)	L1M4b|LINE|L1	76311	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
123099	chr19	51531651	51531830	+	0	NA	promoter-TSS (NM_001177549)	promoter-TSS (NM_001177549)	-70	NM_001177549	946		NM_001245	ENSG00000105492	SIGLEC6	CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1	sialic acid binding Ig like lectin 6	protein-coding
60675	chr13	43085271	43085680	+	0	NA	intron (NM_013238, intron 4 of 5)	intron (NM_013238, intron 4 of 5)	-27690	NR_047013	100874159		NR_047013		LINC00400	-	long intergenic non-protein coding RNA 400	ncRNA
205735	chr7	23495421	23495680	+	0	NA	Intergenic	AluSx|SINE|Alu	5162	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
21308	chr1	204505471	204505630	+	0	NA	Intergenic	Intergenic	-10745	NM_001377334	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
77235	chr15	81291321	81291950	+	0	NA	intron (NM_172217, intron 11 of 18)	intron (NM_172217, intron 11 of 18)	-5335	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
130465	chr2	85543271	85543530	+	0	NA	intron (NM_005911, intron 8 of 8)	intron (NM_005911, intron 8 of 8)	4232	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
181552	chr5	43124821	43125080	+	0	NA	intron (NM_001330710, intron 3 of 5)	AluJr|SINE|Alu	3385	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
219685	chr8	80578001	80579080	+	0	NA	Intergenic	CpG	92314	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
156405	chr22	41176421	41176880	+	0	NA	intron (NM_001362843, intron 29 of 29)	intron (NM_001362843, intron 29 of 29)	20851	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
32465	chr10	102648621	102649650	+	0	NA	intron (NM_001345950, intron 1 of 4)	intron (NM_001345950, intron 1 of 4)	4640	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
235109	chrX	40587671	40587900	+	0	NA	intron (NM_005765, intron 1 of 8)	AluJo|SINE|Alu	6815	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
105107	chr17	82200451	82202350	+	0	NA	intron (NM_001367828, intron 2 of 16)	intron (NM_001367828, intron 2 of 16)	11442	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
88069	chr16	81471351	81471930	+	0	NA	intron (NM_198390, intron 1 of 20)	MER44B|DNA|TcMar-Tigger	-23714	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
58429	chr12	131928501	131929700	+	0	NA	promoter-TSS (NM_001002019)	promoter-TSS (NM_001002019)	-176	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
226859	chr9	78031401	78032700	+	0	NA	promoter-TSS (NM_002072)	promoter-TSS (NM_002072)	-239	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
148317	chr20	63745471	63746150	+	0	NA	3' UTR (NM_001369741, exon 5 of 5)	3' UTR (NM_001369741, exon 5 of 5)	6034	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
71000	chr14	104728551	104729030	+	0	NA	intron (NM_152328, intron 1 of 12)	intron (NM_152328, intron 1 of 12)	-1054	NM_199165	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
123142	chr19	52137301	52137500	+	0	NA	intron (NM_178523, intron 1 of 3)	AluY|SINE|Alu	2538	NR_135823	90317		NM_178523	ENSG00000204611	ZNF616	-	zinc finger protein 616	protein-coding
177525	chr4	118630371	118630730	+	0	NA	non-coding (NR_109983, exon 10 of 10)	non-coding (NR_109983, exon 10 of 10)	621	NR_103825	729218		NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
36096	chr11	3022421	3023080	+	0	NA	intron (NR_165428, intron 10 of 22)	intron (NR_165428, intron 10 of 22)	-6644	NR_046580	100852407		NR_046580	ENSG00000247473	CARS1-AS1	CARS-AS1	CARS1 antisense RNA 1	ncRNA
53801	chr12	69244371	69244530	+	0	NA	intron (NM_001300947, intron 1 of 10)	AluSz|SINE|Alu	4881	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
201594	chr6	149349221	149349730	+	0	NA	intron (NM_001369506, intron 2 of 7)	Tigger9b|DNA|TcMar-Tigger	31175	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
53495	chr12	66297021	66297300	+	0	NA	Intergenic	Intergenic	-5333	NM_001370285	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
62576	chr13	99979051	99979730	+	0	NA	Intergenic	Intergenic	-2394	NM_007129	7546		NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
174721	chr4	42654451	42654780	+	0	NA	intron (NM_001105529, intron 1 of 35)	MLT1M|LTR|ERVL-MaLR	2490	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
44596	chr11	108466621	108468180	+	0	NA	intron (NR_147053, intron 1 of 12)	intron (NR_147053, intron 1 of 12)	129	NM_001330368	160140		NM_152587	ENSG00000166323	C11orf65	MFI	chromosome 11 open reading frame 65	protein-coding
74897	chr15	63599221	63600000	+	0	NA	3' UTR (NM_001367808, exon 2 of 2)	3' UTR (NM_001367808, exon 2 of 2)	1217	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
138593	chr2	208040451	208041000	+	0	NA	Intergenic	L2b|LINE|L2	-15198	NM_001080475	389072		NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
123393	chr19	53922571	53922730	+	0	NA	intron (NM_001384801, intron 4 of 4)	intron (NM_001384801, intron 4 of 4)	13372	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
59614	chr13	27921051	27921800	+	0	NA	intron (NM_000209, intron 1 of 1)	CpG	1425	NM_000209	3651		NM_000209	ENSG00000139515	PDX1	GSF|IDX-1|IPF1|IUF1|MODY4|PAGEN1|PDX-1|STF-1	pancreatic and duodenal homeobox 1	protein-coding
61172	chr13	49113471	49114100	+	0	NA	intron (NM_014923, intron 1 of 23)	intron (NM_014923, intron 1 of 23)	3468	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
148084	chr20	63294701	63295100	+	0	NA	intron (NM_020882, intron 1 of 35)	intron (NM_020882, intron 1 of 35)	1714	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
197675	chr6	85537101	85537500	+	0	NA	intron (NM_001350534, intron 15 of 27)	intron (NM_001350534, intron 15 of 27)	56558	NM_153816	57231		NM_020468	ENSG00000135317	SNX14	RGS-PX2|SCAR20	sorting nexin 14	protein-coding
88603	chr16	85600871	85601030	+	0	NA	Intergenic	Intergenic	-10459	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
30853	chr10	86537801	86538000	+	0	NA	Intergenic	MER50|LTR|ERV1	-16108	NM_015045	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
202467	chr6	158220651	158221450	+	0	NA	Intergenic	Intergenic	52700	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
189894	chr5	177339201	177339800	+	0	NA	intron (NM_006816, intron 2 of 7)	intron (NM_006816, intron 2 of 7)	12168	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
85626	chr16	54286071	54286300	+	0	NA	5' UTR (NM_024336, exon 1 of 4)	5' UTR (NM_024336, exon 1 of 4)	602	NM_024336	79191		NM_024336	ENSG00000177508	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
132469	chr2	105880521	105880780	+	0	NA	intron (NM_001004722, intron 3 of 3)	L3|LINE|CR1	28803	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
24737	chr1	248408401	248408600	+	0	NA	Intergenic	Intergenic	2505	NM_030904	26696		NM_030904	ENSG00000175143	OR2T1	OR1-25	olfactory receptor family 2 subfamily T member 1	protein-coding
14644	chr1	145505791	145506430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-100332	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
169612	chr3	171254351	171254680	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-147756	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
59775	chr13	30153801	30154600	+	0	NA	Intergenic	Intergenic	-1126	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
67580	chr14	71594871	71595100	+	0	NA	intron (NM_001354286, intron 6 of 24)	intron (NM_001354286, intron 6 of 24)	8687	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
53460	chr12	65824551	65824650	+	0	NA	5' UTR (NM_001300919, exon 1 of 4)	5' UTR (NM_001300919, exon 1 of 4)	117	NM_003483	8091		NM_003483	ENSG00000149948	HMGA2	BABL|HMGI-C|HMGIC|LIPO|SRS5|STQTL9	high mobility group AT-hook 2	protein-coding
160821	chr3	33046521	33047100	+	0	NA	intron (NM_000404, intron 9 of 15)	intron (NM_000404, intron 9 of 15)	50022	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
83020	chr16	22295601	22295900	+	0	NA	Intergenic	AluSq|SINE|Alu	-1625	NM_001258035	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
103526	chr17	78497001	78497430	+	0	NA	intron (NR_102401, intron 5 of 5)	intron (NR_102401, intron 5 of 5)	12305	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
53108	chr12	57773301	57773700	+	0	NA	intron (NM_015433, intron 2 of 2)	AluSx|SINE|Alu	886	NM_206914	25895		NM_015433	ENSG00000123427	EEF1AKMT3	FAM119B|METTL21B	EEF1A lysine methyltransferase 3	protein-coding
42886	chr11	73360201	73361200	+	0	NA	intron (NM_014786, intron 11 of 20)	intron (NM_014786, intron 11 of 20)	-15699	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
216833	chr8	22587701	22588300	+	0	NA	intron (NM_198042, intron 5 of 7)	intron (NM_198042, intron 5 of 7)	7525	NM_001368120	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
72587	chr15	34984601	34984800	+	0	NA	intron (NM_014106, intron 2 of 2)	intron (NM_014106, intron 2 of 2)	3587	NM_014106	54989		NM_014106	ENSG00000198146	ZNF770	PRO1914	zinc finger protein 770	protein-coding
45319	chr11	118176451	118176750	+	0	NA	promoter-TSS (NM_004588)	promoter-TSS (NM_004588)	39	NM_004588	6327		NM_004588	ENSG00000149575	SCN2B	ATFB14	sodium voltage-gated channel beta subunit 2	protein-coding
214697	chr7	150987571	150987730	+	0	NA	Intergenic	Intergenic	-3367	NM_000603	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
182384	chr5	61164271	61164730	+	0	NA	intron (NR_109908, intron 1 of 3)	intron (NR_109908, intron 1 of 3)	-2032	NM_001048249	643155		NM_001048249	ENSG00000188725	SMIM15	C5orf43	small integral membrane protein 15	protein-coding
28484	chr10	49679551	49679730	+	0	NA	promoter-TSS (NM_182554)	promoter-TSS (NM_182554)	-11	NM_182554	282966		NM_182554	ENSG00000178645	C10orf53	-	chromosome 10 open reading frame 53	protein-coding
191644	chr6	13336051	13337050	+	0	NA	Intergenic	Tigger4b|DNA|TcMar-Tigger	-7967	NM_001143964	51256		NM_016495	ENSG00000145979	TBC1D7	MGCPH|PIG51|TBC7	TBC1 domain family member 7	protein-coding
35387	chr11	1338411	1339730	+	0	NA	Intergenic	CpG	29362	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
41311	chr11	65883251	65883850	+	0	NA	TTS (NM_198897)	TTS (NM_198897)	3713	NM_001335	1521		NM_001335	ENSG00000172543	CTSW	LYPN	cathepsin W	protein-coding
151752	chr22	17831171	17831330	+	0	NA	intron (NM_015241, intron 21 of 31)	intron (NM_015241, intron 21 of 31)	53960	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
47870	chr12	6664451	6664550	+	0	NA	Intergenic	Intergenic	-1381	NM_001127586	51147		NM_016162	ENSG00000111653	ING4	my036|p29ING4	inhibitor of growth family member 4	protein-coding
177847	chr4	127964401	127966550	+	0	NA	promoter-TSS (NM_001366039)	promoter-TSS (NM_001366039)	69	NM_001366047	80167		NM_025097	ENSG00000164074	ABHD18	C4orf29	abhydrolase domain containing 18	protein-coding
135867	chr2	170965951	170966250	+	0	NA	exon (NM_001201428, exon 10 of 10)	exon (NM_001201428, exon 10 of 10)	36847	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
205869	chr7	25018171	25018530	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-38172	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
141014	chr2	238163751	238164250	+	0	NA	intron (NM_001291832, intron 4 of 7)	CpG-17189	5030	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
96417	chr17	40169771	40169930	+	0	NA	intron (NM_007359, intron 13 of 13)	AluSx|SINE|Alu	-7160	NM_001303534	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
142061	chr20	2094201	2094400	+	0	NA	Intergenic	MIR|SINE|MIR	-7527	NM_080836	140901		NM_080836	ENSG00000125834	STK35	CLIK1|STK35L1	serine/threonine kinase 35	protein-coding
143632	chr20	31823951	31824050	+	0	NA	intron (NM_033118, intron 5 of 12)	intron (NM_033118, intron 5 of 12)	4644	NM_033118	85366		NM_033118	ENSG00000101306	MYLK2	KMLC|MLCK|MLCK2|skMLCK	myosin light chain kinase 2	protein-coding
73548	chr15	44193571	44193930	+	0	NA	intron (NM_001286490, intron 1 of 15)	intron (NM_001286490, intron 1 of 15)	696	NM_001286490	84978		NM_032892	ENSG00000171877	FRMD5	NEDEMA	FERM domain containing 5	protein-coding
184198	chr5	95861751	95862350	+	0	NA	Intergenic	Intergenic	9818	NR_026936	202299		NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
200796	chr6	137893021	137893800	+	0	NA	Intergenic	Intergenic	-25177	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
12471	chr1	107875451	107875750	+	0	NA	intron (NM_006113, intron 1 of 26)	L2a|LINE|L2	-21623	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
9699	chr1	53086801	53087000	+	0	NA	TTS (NM_001287597)	TTS (NM_001287597)	24687	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
213245	chr7	134128401	134128600	+	0	NA	intron (NM_001365700, intron 1 of 15)	intron (NM_001365700, intron 1 of 15)	1160	NM_144648	136332		NM_144648	ENSG00000155530	LRGUK	CFAP246	leucine rich repeats and guanylate kinase domain containing	protein-coding
60222	chr13	40507971	40508350	+	0	NA	Intergenic	Intergenic	-27154	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
172892	chr4	3461921	3462380	+	0	NA	Intergenic	Intergenic	-1156	NM_173660	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
121046	chr19	45822301	45822500	+	0	NA	intron (NM_004819, intron 21 of 26)	L3b|LINE|CR1	-7092	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
188361	chr5	151768621	151768880	+	0	NA	Intergenic	AluJr4|SINE|Alu	2758	NR_132346	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
231895	chr9	133058651	133059330	+	0	NA	TTS (NM_001122823)	TTS (NM_001122823)	-2991	NM_001807	1056		NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
124625	chr2	1509351	1510630	+	0	NA	intron (NM_175722, intron 12 of 14)	intron (NM_175722, intron 12 of 14)	-41940	NR_168373	102723730		NR_168373		LOC102723730	-	uncharacterized LOC102723730	ncRNA
191743	chr6	13767421	13767900	+	0	NA	Intergenic	Intergenic	46900	NM_001031713	63933		NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
182230	chr5	56907701	56908100	+	0	NA	Intergenic	Intergenic	-1360	NM_001323022	133383		NM_153706	ENSG00000155542	SETD9	C5orf35	SET domain containing 9	protein-coding
158204	chr22	50253601	50254330	+	0	NA	intron (NM_001303252, intron 10 of 10)	intron (NM_001303252, intron 10 of 10)	-2700	NM_001159286	83933		NM_032019	ENSG00000100429	HDAC10	HD10	histone deacetylase 10	protein-coding
108400	chr18	69894271	69894780	+	0	NA	intron (NM_006566, intron 4 of 6)	GA-rich|Low_complexity|Low_complexity	53348	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
37755	chr11	31958121	31958400	+	0	NA	Intergenic	Intergenic	83058	NR_120526	100506675		NR_120526	ENSG00000254584	LINC03031	-	long intergenic non-protein coding RNA 3031	ncRNA
199778	chr6	125973171	125973330	+	0	NA	intron (NM_138571, intron 3 of 4)	AluSz|SINE|Alu	-13180	NM_001350583	60487		NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
179382	chr4	183553871	183554380	+	0	NA	Intergenic	(TGAGTG)n|Simple_repeat|Simple_repeat	48043	NM_001291959	3622		NM_001564	ENSG00000168556	ING2	ING1L|p33ING2	inhibitor of growth family member 2	protein-coding
447	chr1	1123301	1123580	+	0	NA	Intergenic	Intergenic	-7351	NM_001330306	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
152060	chr22	19718971	19719450	+	0	NA	intron (NR_037611, intron 1 of 11)	CpG-18755	741	NR_037612	100526833		NR_037611	ENSG00000284874	SEPT5-GP1BB	GP1BB|GPIb-beta|GPIbB	SEPT5-GP1BB readthrough	ncRNA
167125	chr3	127680851	127681150	+	0	NA	TTS (NR_033429)	TTS (NR_033429)	8048	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
209564	chr7	77350671	77350830	+	0	NA	intron (NR_146937, intron 18 of 31)	AluSx1|SINE|Alu	-64448	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
211416	chr7	105048801	105049000	+	0	NA	intron (NM_182931, intron 3 of 26)	intron (NM_182931, intron 3 of 26)	34695	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
25014	chr10	3468071	3468430	+	0	NA	intron (NR_155743, intron 3 of 4)	intron (NR_155743, intron 3 of 4)	34588	NR_155743	101927880		NR_155743	ENSG00000233321	LINC02669	-	long intergenic non-protein coding RNA 2669	ncRNA
68475	chr14	87986451	87986750	+	0	NA	exon (NM_000153, exon 4 of 17)	exon (NM_000153, exon 4 of 17)	6582	NM_000153	2581		NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
144365	chr20	35087351	35087450	+	0	NA	intron (NM_199368, intron 1 of 18)	MER113|DNA|hAT-Charlie	5407	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
170624	chr3	187021901	187022300	+	0	NA	intron (NM_003032, intron 1 of 6)	MER21A|LTR|ERVL	245	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
458	chr1	1138701	1139180	+	0	NA	intron (NR_038869, intron 1 of 2)	intron (NR_038869, intron 1 of 2)	1923	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
112193	chr19	5674271	5674430	+	0	NA	Intergenic	AluY|SINE|Alu	5888	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
152113	chr22	19896621	19897280	+	0	NA	intron (NR_147957, intron 9 of 16)	intron (NR_147957, intron 9 of 16)	35603	NM_001352301	10587		NM_006440	ENSG00000184470	TXNRD2	GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2|TXNR2	thioredoxin reductase 2	protein-coding
16208	chr1	153877651	153877950	+	0	NA	intron (NM_020699, intron 1 of 10)	AluSz|SINE|Alu	45172	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
68323	chr14	77554101	77554700	+	0	NA	intron (NM_004863, intron 8 of 11)	L1MB7|LINE|L1	-55584	NM_182509	145501		NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2	protein-coding
181864	chr5	53977251	53977350	+	0	NA	intron (NM_019087, intron 4 of 4)	AluY|SINE|Alu	-25701	NR_030307	693166		NR_030307	ENSG00000207627	MIR581	MIRN581|hsa-mir-581	microRNA 581	ncRNA
29466	chr10	70549801	70550280	+	0	NA	intron (NM_014431, intron 18 of 19)	intron (NM_014431, intron 18 of 19)	52701	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
65306	chr14	50085601	50086400	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	19043	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
147204	chr20	57374521	57375830	+	0	NA	intron (NM_003610, intron 11 of 11)	intron (NM_003610, intron 11 of 11)	-15677	NM_001190472	100462983		NM_001190472		MTRNR2L3	HN3	MT-RNR2 like 3 (pseudogene)	pseudo
222741	chr8	141403601	141404950	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	12254	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
208742	chr7	73516851	73517150	+	0	NA	intron (NM_001370402, intron 1 of 18)	AluSx1|SINE|Alu	5293	NM_001370402	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
185599	chr5	131411821	131412430	+	0	NA	Intergenic	AluSx|SINE|Alu	148072	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
107401	chr18	46103351	46103450	+	0	NA	promoter-TSS (NR_026978)	promoter-TSS (NR_026978)	833	NM_001001937	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
116209	chr19	17498701	17499100	+	0	NA	intron (NM_198580, intron 7 of 11)	LTR13|LTR|ERVK	-12749	NM_012088	25796		NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
42231	chr11	68052451	68052750	+	0	NA	TTS (NM_001376222)	TTS (NM_001376222)	7806	NR_106811	102465451		NR_106811	ENSG00000275022	MIR6753	hsa-mir-6753	microRNA 6753	ncRNA
218486	chr8	51939271	51939500	+	0	NA	Intergenic	Intergenic	-40199	NM_001286782	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
103220	chr17	77486401	77487150	+	0	NA	intron (NM_001293697, intron 2 of 9)	intron (NM_001293697, intron 2 of 9)	11140	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
92767	chr17	15563051	15564500	+	0	NA	promoter-TSS (NM_145301)	promoter-TSS (NM_145301)	-144	NM_145301	201158		NM_145301	ENSG00000175106	TVP23C	FAM18B2	trans-golgi network vesicle protein 23 homolog C	protein-coding
153424	chr22	25048651	25049350	+	0	NA	intron (NM_001145206, intron 3 of 10)	MIR|SINE|MIR	21026	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
187360	chr5	141734721	141735250	+	0	NA	Intergenic	Intergenic	-52755	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
50629	chr12	48707821	48708250	+	0	NA	intron (NM_001240, intron 2 of 8)	AluSz|SINE|Alu	8672	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
149452	chr21	31657201	31657430	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-2378	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
36927	chr11	10811321	10811780	+	0	NA	intron (NR_120540, intron 2 of 2)	AluJr|SINE|Alu	2253	NR_120540	101928053		NR_120540	ENSG00000246308	LOC101928053	-	uncharacterized LOC101928053	ncRNA
98851	chr17	48453171	48454480	+	0	NA	intron (NR_110804, intron 2 of 5)	intron (NR_110804, intron 2 of 5)	8992	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
8048	chr1	38578521	38578780	+	0	NA	Intergenic	CpG	103454	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
160249	chr3	23998901	23999130	+	0	NA	Intergenic	Intergenic	-52453	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
131642	chr2	97118271	97118440	+	0	NA	exon (NM_198555, exon 3 of 3)	exon (NM_198555, exon 3 of 3)	5202	NM_001354587	375248		NM_198555	ENSG00000135976	ANKRD36	UNQ2430	ankyrin repeat domain 36	protein-coding
170723	chr3	188148471	188148830	+	0	NA	Intergenic	Intergenic	-4371	NM_001375455	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
106166	chr18	9951271	9951530	+	0	NA	intron (NM_194434, intron 5 of 5)	intron (NM_194434, intron 5 of 5)	37384	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
82534	chr16	18349351	18349650	+	0	NA	intron (NR_146336, intron 7 of 34).2	intron (NR_146336, intron 7 of 34).2	2945	NR_146336	110006323		NR_146336		PKD1P4-NPIPA8	-	PKD1P4-NPIPA8 readthrough	pseudo
142438	chr20	3928371	3928930	+	0	NA	non-coding (NR_136715, exon 7 of 7)	non-coding (NR_136715, exon 7 of 7)	-11087	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
229582	chr9	123353721	123354700	+	0	NA	Intergenic	Intergenic	-1987	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
99462	chr17	50148351	50149480	+	0	NA	intron (NM_032595, intron 1 of 9)	intron (NM_032595, intron 1 of 9)	1762	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
7629	chr1	35561321	35561580	+	0	NA	intron (NM_014284, intron 3 of 6)	intron (NM_014284, intron 3 of 6)	3651	NM_014284	23154		NM_014284	ENSG00000020129	NCDN	NEDIES	neurochondrin	protein-coding
206660	chr7	36287201	36287700	+	0	NA	intron (NM_030636, intron 5 of 7)	intron (NM_030636, intron 5 of 7)	79790	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
121379	chr19	46865671	46865830	+	0	NA	intron (NM_004491, intron 1 of 6)	intron (NM_004491, intron 1 of 6)	4753	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
212943	chr7	130938171	130938990	+	0	NA	Intergenic	Intergenic	25116	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
182811	chr5	69091501	69091700	+	0	NA	Intergenic	LTR46|LTR|ERV1	-2414	NM_022902	64924		NM_022902	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 member 5	protein-coding
98158	chr17	46044351	46044880	+	0	NA	intron (NM_015443, intron 7 of 14).2	intron (NM_015443, intron 7 of 14).2	45365	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
75797	chr15	68834001	68834500	+	0	NA	Intergenic	Intergenic	-13355	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
164823	chr3	70984301	70984500	+	0	NA	intron (NM_001244810, intron 14 of 20)	L2b|LINE|L2	80524	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
100452	chr17	61397701	61398450	+	0	NA	intron (NR_125750, intron 1 of 2)	CpG	1531	NR_125749	103689912		NR_125749	ENSG00000267280	TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
182536	chr5	65663901	65664330	+	0	NA	intron (NM_001365343, intron 9 of 10)	intron (NM_001365343, intron 9 of 10)	39088	NM_024941	80006		NM_024941	ENSG00000113597	TRAPPC13	C5orf44|SHLD3	trafficking protein particle complex subunit 13	protein-coding
25837	chr10	11219621	11219900	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	54730	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
150898	chr21	44154851	44155510	+	0	NA	Intergenic	Intergenic	4682	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
206589	chr7	35722451	35723630	+	0	NA	Intergenic	MIR|SINE|MIR	6603	NR_108082	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
110818	chr19	2481701	2482580	+	0	NA	Intergenic	AluSx1|SINE|Alu	6013	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
136587	chr2	178195271	178195430	+	0	NA	intron (NM_001201481, intron 1 of 23)	CpG	838	NM_001201480	114880		NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
11091	chr1	85285171	85285330	+	0	NA	Intergenic	MER52A|LTR|ERV1	-8618	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
157084	chr22	42617371	42618230	+	0	NA	TTS (NM_007326)	TTS (NM_007326)	2555	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
163976	chr3	53048251	53048630	+	0	NA	Intergenic	AluY|SINE|Alu	-2367	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
15099	chr1	148565351	148565450	+	0	NA	exon (NM_015383, exon 25 of 66)	exon (NM_015383, exon 25 of 66)	30317	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
109737	chr19	1100271	1100600	+	0	NA	Intergenic	AluSp|SINE|Alu	-3559	NM_002085	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
157317	chr22	44604221	44604880	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	20869	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
117397	chr19	19611171	19611330	+	0	NA	intron (NM_025245, intron 1 of 7)	intron (NM_025245, intron 1 of 7)	7437	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
121073	chr19	45880901	45881100	+	0	NA	Intergenic	AluSc8|SINE|Alu	5141	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
234508	chrX	19350921	19351850	+	0	NA	exon (NM_000284, exon 4 of 11)	exon (NM_000284, exon 4 of 11)	7458	NM_001173454	5160		NM_000284	ENSG00000131828	PDHA1	E1alpha|PDHA|PDHAD|PDHCE1A|PHE1A	pyruvate dehydrogenase E1 subunit alpha 1	protein-coding
125156	chr2	10028001	10028300	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	15251	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
95178	chr17	35175201	35175530	+	0	NA	intron (NM_173167, intron 13 of 18)	L2b|LINE|L2	19028	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
171457	chr3	196336751	196336850	+	0	NA	intron (NM_138461, intron 1 of 4)	intron (NM_138461, intron 1 of 4)	1588	NM_138461	116211		NM_138461	ENSG00000145107	TM4SF19	OCTM4	transmembrane 4 L six family member 19	protein-coding
162245	chr3	47266701	47267000	+	0	NA	intron (NM_001134878, intron 8 of 21)	intron (NM_001134878, intron 8 of 21)	15748	NM_001377477	64147		NM_022342	ENSG00000088727	KIF9	-	kinesin family member 9	protein-coding
160027	chr3	18419951	18420050	+	0	NA	intron (NM_001322876, intron 1 of 9)	intron (NM_001322876, intron 1 of 9)	5339	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
36715	chr11	9005371	9005730	+	0	NA	Intergenic	L2b|LINE|L2	-1549	NM_020645	56675		NM_020645	ENSG00000175352	NRIP3	C11orf14|NY-SAR-105	nuclear receptor interacting protein 3	protein-coding
225650	chr9	36394221	36395230	+	0	NA	intron (NM_194330, intron 1 of 11)	MIRb|SINE|MIR	5544	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
136806	chr2	181683321	181683600	+	0	NA	Intergenic	CpG	-2795	NR_146175	4760		NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|T2D|bHLHa3	neuronal differentiation 1	protein-coding
74248	chr15	56929521	56929980	+	0	NA	intron (NM_207038, intron 3 of 19)	intron (NM_207038, intron 3 of 19)	10305	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
135061	chr2	156432921	156433650	+	0	NA	Intergenic	LTR8|LTR|ERV1	-2267	NM_001083112	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
177041	chr4	107734271	107734430	+	0	NA	Intergenic	PABL_B-int|LTR|ERV1	-14116	NM_005443	9061		NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
129048	chr2	65061451	65061950	+	0	NA	intron (NM_015147, intron 1 of 6)	intron (NM_015147, intron 1 of 6)	5284	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
65937	chr14	55404351	55404450	+	0	NA	intron (NM_014924, intron 1 of 9)	intron (NM_014924, intron 1 of 9)	7430	NM_014924	22863		NM_014924	ENSG00000126775	ATG14	ATG14L|BARKOR|KIAA0831	autophagy related 14	protein-coding
106198	chr18	11580921	11581180	+	0	NA	Intergenic	Intergenic	-28508	NM_001282300	646000		NM_001282300	ENSG00000236396	SLC35G4	AMAC1L1|SLC35G4P	solute carrier family 35 member G4	protein-coding
152736	chr22	21689471	21690630	+	0	NA	intron (NM_148175, intron 15 of 20)	intron (NM_148175, intron 15 of 20)	24038	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
36674	chr11	8263821	8264350	+	0	NA	promoter-TSS (NR_073006)	promoter-TSS (NR_073006)	-207	NM_002315	4004		NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
1905	chr1	6457671	6458030	+	0	NA	intron (NM_031475, intron 12 of 12)	MER33|DNA|hAT-Charlie	8323	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
95871	chr17	38851301	38852080	+	0	NA	promoter-TSS (NR_145761)	promoter-TSS (NR_145761)	-32	NR_145761	109617002		NR_145761	ENSG00000252699	SNORA21B	-	small nucleolar RNA, H/ACA box 21B	snoRNA
91879	chr17	7257521	7257780	+	0	NA	intron (NM_203413, intron 6 of 6)	AluJb|SINE|Alu	4828	NM_001307	1366		NM_001307	ENSG00000181885	CLDN7	CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1	claudin 7	protein-coding
14467	chr1	144474521	144475150	+	0	NA	Intergenic	Intergenic	-13166	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
225900	chr9	39807821	39808100	+	0	NA	non-coding (NR_015363, exon 2 of 2)	non-coding (NR_015363, exon 2 of 2)	2199	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
87791	chr16	75459251	75459950	+	0	NA	intron (NM_001304998, intron 1 of 2)	AluSx|SINE|Alu	4843	NM_001304997	124491		NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
191776	chr6	14124121	14124380	+	0	NA	intron (NM_001040280, intron 2 of 4)	intron (NM_001040280, intron 2 of 4)	6478	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
115687	chr19	16194571	16194930	+	0	NA	Intergenic	AluJb|SINE|Alu	-3161	NM_032493	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
150866	chr21	44093101	44093800	+	0	NA	intron (NM_003274, intron 19 of 22)	AluJb|SINE|Alu	-13949	NM_005049	5822		NM_005049	ENSG00000241945	PWP2	EHOC-17|PWP2H|UTP1	PWP2 small subunit processome component	protein-coding
98396	chr17	46560321	46560680	+	0	NA	intron (NM_001039083, intron 3 of 3).2	intron (NM_001039083, intron 3 of 3).2	19191	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
209105	chr7	74889021	74889300	+	0	NA	intron (NR_040584, intron 1 of 7)	intron (NR_040584, intron 1 of 7)	1452	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
97457	chr17	43699351	43699600	+	0	NA	Intergenic	Intergenic	-37553	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
79645	chr16	1188071	1188230	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	34909	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
140737	chr2	234459571	234460500	+	0	NA	Intergenic	MIRc|SINE|MIR	-5440	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
15127	chr1	148680751	148680850	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-1036	NM_001364008	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
97935	chr17	45164501	45165030	+	0	NA	intron (NM_144608, intron 3 of 3)	X9_LINE|LINE|L1	2906	NM_001303444	124790		NM_144608	ENSG00000168517	HEXIM2	L3	HEXIM P-TEFb complex subunit 2	protein-coding
145469	chr20	43744251	43744550	+	0	NA	Intergenic	Intergenic	-17398	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
115719	chr19	16237571	16237930	+	0	NA	3' UTR (NM_032493, exon 12 of 12)	3' UTR (NM_032493, exon 12 of 12)	39839	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
80403	chr16	2597821	2598250	+	0	NA	3' UTR (NM_001261816, exon 12 of 12)	3' UTR (NM_001261816, exon 12 of 12)	-5349	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
155799	chr22	39302101	39302950	+	0	NA	Intergenic	MER66B|LTR|ERV1	11386	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
4717	chr1	23216801	23217930	+	0	NA	5' UTR (NM_000864, exon 1 of 2)	5' UTR (NM_000864, exon 1 of 2)	137	NM_000864	3352		NM_000864	ENSG00000179546	HTR1D	5-HT1D|HT1DA|HTR1DA|HTRL|RDC4	5-hydroxytryptamine receptor 1D	protein-coding
43296	chr11	76201021	76201280	+	0	NA	intron (NM_004626, intron 1 of 4)	intron (NM_004626, intron 1 of 4)	5352	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
114522	chr19	12806171	12807380	+	0	NA	exon (NM_006397, exon 1 of 8)	exon (NM_006397, exon 1 of 8)	191	NM_006397	10535		NM_006397	ENSG00000104889	RNASEH2A	AGS4|JUNB|RNASEHI|RNHIA|RNHL	ribonuclease H2 subunit A	protein-coding
227325	chr9	89445171	89445800	+	0	NA	intron (NM_001371200, intron 2 of 20)	MLT1D|LTR|ERVL-MaLR	34405	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
87982	chr16	80590971	80591930	+	0	NA	Intergenic	Intergenic	-18642	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
65455	chr14	51745451	51745550	+	0	NA	Intergenic	SATR1|Satellite|Satellite	28217	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
20684	chr1	200509821	200510320	+	0	NA	Intergenic	Intergenic	-100034	NM_001281293	23528		NM_012482	ENSG00000162702	ZNF281	GZP1|ZBP-99|ZBP99|ZNP-99	zinc finger protein 281	protein-coding
19223	chr1	172540271	172540430	+	0	NA	intron (NM_001282751, intron 1 of 21)	intron (NM_001282751, intron 1 of 21)	7200	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
142867	chr20	17675901	17676180	+	0	NA	intron (NM_004587, intron 1 of 24)	AluJb|SINE|Alu	6202	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
38566	chr11	46006501	46007080	+	0	NA	intron (NR_147890, intron 5 of 18)	intron (NR_147890, intron 5 of 18)	84134	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
112342	chr19	5925001	5925400	+	0	NA	intron (NM_003624, intron 10 of 16)	intron (NM_003624, intron 10 of 16)	10946	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
206948	chr7	38247321	38248130	+	0	NA	Intergenic	Intergenic	25922	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
233040	chr9	137045421	137046100	+	0	NA	intron (NM_015392, intron 1 of 8)	CpG	417	NM_015392	56654		NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
228279	chr9	98072971	98073400	+	0	NA	intron (NM_018946, intron 2 of 5)	intron (NM_018946, intron 2 of 5)	16453	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
31070	chr10	89000771	89002230	+	0	NA	intron (NR_135314, intron 1 of 8)	intron (NR_135314, intron 1 of 8)	-8525	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
58531	chr12	132224471	132224800	+	0	NA	intron (NM_001122636, intron 6 of 10)	(CA)n|Simple_repeat|Simple_repeat	-18607	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
190574	chr5	180862851	180863430	+	0	NA	Intergenic	Intergenic	-1864	NM_001172638	643836		NM_152283	ENSG00000196670	ZFP62	ZET|ZNF755	ZFP62 zinc finger protein	protein-coding
40527	chr11	64293451	64293750	+	0	NA	intron (NR_133661, intron 2 of 6)	MER53|DNA|hAT	1602	NM_001317090	50801		NM_016611	ENSG00000182450	KCNK4	FHEIG|K2p4.1|TRAAK|TRAAK1	potassium two pore domain channel subfamily K member 4	protein-coding
70826	chr14	103625071	103627100	+	0	NA	Intergenic	Intergenic	-3103	NM_005552	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
69729	chr14	98238001	98238200	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-259976	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
28392	chr10	47479901	47480100	+	0	NA	intron (NM_001040084, intron 1 of 11)	intron (NM_001040084, intron 1 of 11)	4115	NM_001040084	653145		NM_001040084	ENSG00000265190	ANXA8	ANX8|CH17-360D5.2	annexin A8	protein-coding
86599	chr16	67287671	67288030	+	0	NA	intron (NM_001129728, intron 18 of 21)	intron (NM_001129728, intron 18 of 21)	8318	NM_001129729	25894		NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
163949	chr3	52874971	52875330	+	0	NA	intron (NM_001198974, intron 1 of 9)	Tigger13a|DNA|TcMar-Tigger	22398	NM_198563	375346		NM_198563	ENSG00000213533	STIMATE	TMEM110	STIM activating enhancer	protein-coding
152360	chr22	20476451	20476750	+	0	NA	intron (NM_032775, intron 2 of 6)	AluYe5|SINE|Alu	19195	NM_032775	84861		NM_032775	ENSG00000099910	KLHL22	KELCHL	kelch like family member 22	protein-coding
179082	chr4	168306501	168306700	+	0	NA	exon (NM_017631, exon 5 of 38)	exon (NM_017631, exon 5 of 38)	12152	NM_017631	55601		NM_017631	ENSG00000137628	DDX60	-	DExD/H-box helicase 60	protein-coding
91661	chr17	5518871	5519230	+	0	NA	intron (NM_014922, intron 13 of 15)	AluYm1|SINE|Alu	-18044	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
95669	chr17	38298821	38299300	+	0	NA	intron (NM_032351, intron 2 of 7)	AluSg4|SINE|Alu	1892	NM_032351	84311		NM_032351	ENSG00000278845	MRPL45	L45mt|MRP-L45|Mba1|mL45	mitochondrial ribosomal protein L45	protein-coding
46478	chr11	128311121	128311400	+	0	NA	Intergenic	Intergenic	102494	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
233454	chr9	137639071	137640450	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	20755	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
74951	chr15	63800971	63801330	+	0	NA	intron (NM_003922, intron 1 of 77)	MER21C|LTR|ERVL	32798	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
49456	chr12	25051401	25052910	+	0	NA	promoter-TSS (NM_001366544)	promoter-TSS (NM_001366544)	-73	NR_159367	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
158231	chr22	50279801	50280530	+	0	NA	intron (NM_001376885, intron 25 of 36)	intron (NM_001376885, intron 25 of 36)	-9785	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
188061	chr5	150044971	150045130	+	0	NA	intron (NM_001366501, intron 14 of 18)	intron (NM_001366501, intron 14 of 18)	41504	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
159921	chr3	16996001	16996580	+	0	NA	intron (NM_015184, intron 1 of 5)	intron (NM_015184, intron 1 of 5)	63094	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
149920	chr21	36172871	36173030	+	0	NA	intron (NM_001320714, intron 2 of 36)	AluSx1|SINE|Alu	8409	NM_005128	9980		NM_005128	ENSG00000142197	DOP1B	21orf5|C21orf5|DOPEY2	DOP1 leucine zipper like protein B	protein-coding
236236	chrX	65725151	65725250	+	0	NA	intron (NM_002444, intron 2 of 12)	MSTB2|LTR|ERVL-MaLR	57546	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
187113	chr5	140405821	140406330	+	0	NA	intron (NM_020690, intron 1 of 35)	AluSx1|SINE|Alu	4242	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
121346	chr19	46791571	46792700	+	0	NA	Intergenic	L2b|LINE|L2	-3541	NM_005628	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
148230	chr20	63624101	63625200	+	0	NA	intron (NM_012384, intron 1 of 9)	intron (NM_012384, intron 1 of 9)	2451	NM_012384	26205		NM_012384	ENSG00000101216	GMEB2	GMEB-2|P79PIF|PIF79	glucocorticoid modulatory element binding protein 2	protein-coding
47088	chr12	632151	632250	+	0	NA	intron (NR_122124, intron 1 of 4)	intron (NR_122124, intron 1 of 4)	1309	NR_122124	100049716		NR_122124	ENSG00000177406	NINJ2-AS1	-	NINJ2 antisense RNA 1	ncRNA
11321	chr1	89418021	89418330	+	0	NA	intron (NR_003133, intron 2 of 4)	L1PA2|LINE|L1	10496	NR_003133	400759		NR_003133	ENSG00000290525	GBP1P1	LIMIT	guanylate binding protein 1 pseudogene 1	pseudo
15329	chr1	149899221	149900500	+	0	NA	5' UTR (NM_001321026, exon 2 of 2)	5' UTR (NM_001321026, exon 2 of 2)	292	NM_001321026	51027		NM_016074	ENSG00000178096	BOLA1	CGI-143	bolA family member 1	protein-coding
160276	chr3	25826521	25826980	+	0	NA	Intergenic	Intergenic	36660	NM_017897	54995		NM_017897	ENSG00000151093	OXSM	CEM1|FASN2D|KASI|KS	3-oxoacyl-ACP synthase, mitochondrial	protein-coding
224745	chr9	21805271	21805430	+	0	NA	intron (NM_002451, intron 1 of 7)	L2a|LINE|L2	2714	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
85374	chr16	50275471	50275630	+	0	NA	intron (NM_001114, intron 1 of 25)	MER103C|DNA|hAT-Charlie	8999	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
142361	chr20	3770251	3770550	+	0	NA	Intergenic	Intergenic	-2012	NR_047675	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
83943	chr16	29117151	29117450	+	0	NA	TTS (NR_003369)	TTS (NR_003369)	42458	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
235103	chrX	40483501	40483730	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-97355	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
161968	chr3	46285081	46286030	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	43095	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
157536	chr22	45421721	45422430	+	0	NA	intron (NM_015653, intron 3 of 6)	intron (NM_015653, intron 3 of 6)	8382	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
16186	chr1	153801151	153801250	+	0	NA	Intergenic	Intergenic	7253	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
193796	chr6	31424851	31425530	+	0	NA	Intergenic	L1MD1|LINE|L1	-16477	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
29280	chr10	69205901	69206800	+	0	NA	intron (NM_001301683, intron 14 of 15)	intron (NM_001301683, intron 14 of 15)	-13982	NM_025130	80201		NM_025130	ENSG00000156510	HKDC1	RP92	hexokinase domain containing 1	protein-coding
141314	chr2	240454021	240454280	+	0	NA	intron (NR_161169, intron 1 of 2)	CpG	-1851	NR_029702	406941		NR_029702	ENSG00000207611	MIR149	MIRN149|mir-149	microRNA 149	ncRNA
238188	chrX	136908821	136910900	+	0	NA	Intergenic	Intergenic	-29080	NR_028476	27316		NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|MRXSG|MRXSH|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein X-linked	protein-coding
226853	chr9	78018851	78018950	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	12911	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
72699	chr15	38587001	38587500	+	0	NA	Intergenic	Intergenic	-22436	NM_005739	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
70051	chr14	100123801	100124200	+	0	NA	intron (NM_016337, intron 4 of 13)	intron (NM_016337, intron 4 of 13)	14345	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
182084	chr5	55991271	55991430	+	0	NA	intron (NR_157112, intron 1 of 17)	intron (NR_157112, intron 1 of 17)	3613	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
184815	chr5	111251071	111251430	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	26866	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
3892	chr1	17051851	17052650	+	0	NA	intron (NM_003000, intron 1 of 7)	intron (NM_003000, intron 1 of 7)	1782	NM_003000	6390		NM_003000	ENSG00000117118	SDHB	CWS2|IP|MC2DN4|PGL4|PPGL4|SDH|SDH1|SDH2|SDHIP	succinate dehydrogenase complex iron sulfur subunit B	protein-coding
157811	chr22	46933651	46933750	+	0	NA	intron (NR_104292, intron 10 of 13)	MER3|DNA|hAT-Charlie	-17658	NR_122047	642757		NR_122047	ENSG00000280080	TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
76353	chr15	74540071	74541600	+	0	NA	promoter-TSS (NM_001307939)	promoter-TSS (NM_001307939)	-342	NM_001307939	10620		NM_006465	ENSG00000179361	ARID3B	BDP|DRIL2	AT-rich interaction domain 3B	protein-coding
117891	chr19	32695601	32695800	+	0	NA	intron (NM_001105570, intron 1 of 2)	HERV9N-int|LTR|ERV1	3739	NM_001105570	390916		NM_001105570	ENSG00000213965	NUDT19	RP2	nudix hydrolase 19	protein-coding
53138	chr12	57846401	57847450	+	0	NA	promoter-TSS (NM_005730)	promoter-TSS (NM_005730)	-196	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
85	chr1	349821	350450	+	0	NA	Intergenic	L1MC3|LINE|L1	101543	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
68093	chr14	75290951	75291630	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-3114	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
78297	chr15	90893071	90893430	+	0	NA	intron (NM_001143783, intron 13 of 16)	intron (NM_001143783, intron 13 of 16)	8204	NM_001143784	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
216765	chr8	22488471	22489150	+	0	NA	intron (NM_005605, intron 3 of 13)	L2a|LINE|L2	47732	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
24707	chr1	247334921	247335380	+	0	NA	TTS (NR_168398)	TTS (NR_168398)	3096	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
34616	chr10	133279921	133280200	+	0	NA	intron (NM_001256618, intron 16 of 16)	intron (NM_001256618, intron 16 of 16)	-3192	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
33866	chr10	124410401	124411150	+	0	NA	intron (NM_001171814, intron 1 of 8)	AluJr|SINE|Alu	8148	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
100920	chr17	64466501	64466900	+	0	NA	intron (NM_001085423, intron 8 of 9)	intron (NM_001085423, intron 8 of 9)	17585	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
231118	chr9	129827571	129827730	+	0	NA	3' UTR (NM_016520, exon 9 of 9)	3' UTR (NM_016520, exon 9 of 9)	-3514	NM_000113	1861		NM_000113	ENSG00000136827	TOR1A	AMC5|DQ2|DYT1	torsin family 1 member A	protein-coding
148384	chr20	63900001	63900800	+	0	NA	intron (NM_025219, intron 1 of 4)	AluJb|SINE|Alu	5274	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
147810	chr20	62653671	62653830	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	11247	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
88633	chr16	85631121	85631430	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	17953	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
9508	chr1	51303651	51304580	+	0	NA	intron (NM_001144832, intron 8 of 17)	MER113|DNA|hAT-Charlie	-6154	NM_001297667	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
123093	chr19	51440921	51442230	+	0	NA	Intergenic	Intergenic	16879	NM_014442	27181		NM_014442	ENSG00000105366	SIGLEC8	SAF2|SIGLEC-8|SIGLEC8L	sialic acid binding Ig like lectin 8	protein-coding
53831	chr12	69415771	69415930	+	0	NA	Intergenic	Intergenic	-54538	NM_001278356	10818		NM_006654	ENSG00000166225	FRS2	FRS1A|FRS2A|FRS2alpha|SNT|SNT-1|SNT1	fibroblast growth factor receptor substrate 2	protein-coding
52351	chr12	55189001	55189300	+	0	NA	Intergenic	Intergenic	-31875	NM_001005280	121364		NM_001005280	ENSG00000179919	OR10A7	OR12-6	olfactory receptor family 10 subfamily A member 7	protein-coding
196512	chr6	43702751	43703080	+	0	NA	Intergenic	Intergenic	-15103	NM_001193343	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
31463	chr10	96340301	96340580	+	0	NA	Intergenic	Intergenic	16719	NM_001284327	93377		NM_033207	ENSG00000197430	OPALIN	HTMP10|TMEM10|TMP10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding
119706	chr19	41132501	41132780	+	0	NA	Intergenic	Intergenic	18208	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
52896	chr12	57212151	57212480	+	0	NA	intron (NM_002332, intron 88 of 88)	intron (NM_002332, intron 88 of 88)	-4479	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
161996	chr3	46372471	46373100	+	0	NA	intron (NR_125406, intron 2 of 3)	intron (NR_125406, intron 2 of 3)	2643	NM_001100168	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
216839	chr8	22594071	22594230	+	0	NA	3' UTR (NM_001368120, exon 9 of 9)	3' UTR (NM_001368120, exon 9 of 9)	-5449	NM_001013842	541565		NM_173686	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
71030	chr14	104776821	104777800	+	0	NA	intron (NM_001382433, intron 5 of 15)	(GGCACA)n|Simple_repeat|Simple_repeat	16291	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
193768	chr6	31354001	31355500	+	0	NA	TTS (NR_106951)	TTS (NR_106951)	566	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
9061	chr1	44824701	44825430	+	0	NA	intron (NM_001166292, intron 19 of 22)	L2a|LINE|L2	16583	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
163588	chr3	51966701	51969880	+	0	NA	promoter-TSS (NM_033008)	promoter-TSS (NM_033008)	-824	NM_001363885	57060		NM_020418	ENSG00000090097	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding
148017	chr20	63101051	63104700	+	0	NA	promoter-TSS (NR_003245)	promoter-TSS (NR_003245)	-556	NR_003245	768097		NR_003245	ENSG00000231133	HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B	ncRNA
228246	chr9	97981171	97981980	+	0	NA	Intergenic	Intergenic	-1766	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
144957	chr20	37177751	37178500	+	0	NA	promoter-TSS (NM_001324304)	promoter-TSS (NM_001324304)	-921	NM_001135771	6185		NM_002951	ENSG00000118705	RPN2	RIBIIR|RPN-II|RPNII|SWP1	ribophorin II	protein-coding
86825	chr16	67882651	67883050	+	0	NA	exon (NM_014329, exon 26 of 29)	exon (NM_014329, exon 26 of 29)	-2035	NM_001348682	123904		NM_198443	ENSG00000188038	NRN1L	MRCC2446|UNQ2446|cpg15-2	neuritin 1 like	protein-coding
198647	chr6	107810951	107811250	+	0	NA	intron (NM_198081, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	13213	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
205863	chr7	24972051	24972350	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	7978	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
77205	chr15	80974971	80975130	+	0	NA	TTS (NM_015154)	TTS (NM_015154)	14769	NR_126327	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
164241	chr3	57079201	57079680	+	0	NA	promoter-TSS (NM_001377410)	promoter-TSS (NM_001377410)	-172	NM_001377408	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
208597	chr7	72945221	72945580	+	0	NA	intron (NM_172020, intron 12 of 13)	intron (NM_172020, intron 12 of 13)	9363	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
187736	chr5	143446871	143447450	+	0	NA	Intergenic	Intergenic	-11648	NM_001018077	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
123399	chr19	53958451	53958950	+	0	NA	Intergenic	Intergenic	-4237	NM_031895	59283		NM_031895	ENSG00000142408	CACNG8	-	calcium voltage-gated channel auxiliary subunit gamma 8	protein-coding
43485	chr11	78318321	78318580	+	0	NA	intron (NM_080491, intron 1 of 9)	L2|LINE|L2	23430	NM_012296	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
138599	chr2	208175251	208175600	+	0	NA	intron (NM_001099334, intron 6 of 8)	intron (NM_001099334, intron 6 of 8)	-11836	NM_014617	1418		NM_014617	ENSG00000168582	CRYGA	CRY-g-A|CRYG1|CRYG5	crystallin gamma A	protein-coding
54586	chr12	92407801	92408330	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-13466	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
21338	chr1	204562301	204562750	+	0	NA	Intergenic	Intergenic	46119	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
28022	chr10	43207471	43207630	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	22189	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
178875	chr4	155354001	155354300	+	0	NA	promoter-TSS (NR_125937)	promoter-TSS (NR_125937)	-66	NR_125937	102724776		NR_125937	ENSG00000250910	MAP9-AS1	-	MAP9 antisense RNA 1	ncRNA
144607	chr20	35822071	35822230	+	0	NA	intron (NM_016436, intron 2 of 17)	AluJo|SINE|Alu	50135	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
182317	chr5	58966101	58966300	+	0	NA	Intergenic	Intergenic	33698	NM_001197223	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
141087	chr2	238322151	238322550	+	0	NA	intron (NM_001139490, intron 1 of 14)	intron (NM_001139490, intron 1 of 14)	1806	NM_001139490	26146		NM_015650	ENSG00000204104	TRAF3IP1	CFAP116|FAP116|IFT54|MIP-T3|MIPT3|SLSN9	TRAF3 interacting protein 1	protein-coding
178340	chr4	145830871	145831030	+	0	NA	intron (NM_178835, intron 7 of 14)	Charlie26a|DNA|hAT-Charlie	107873	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
132463	chr2	105873601	105874200	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	22053	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
93551	chr17	19067871	19068430	+	0	NA	Intergenic	L1MC2|LINE|L1	-4014	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
89577	chr16	89265971	89266130	+	0	NA	Intergenic	Intergenic	-30078	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
35986	chr11	2870251	2871000	+	0	NA	non-coding (NR_024627, exon 1 of 2)	non-coding (NR_024627, exon 1 of 2)	592	NR_024627	55539		NM_018722	ENSG00000237941	KCNQ1DN	BWRT|HSA404617	KCNQ1 downstream neighbor	ncRNA
170170	chr3	183636301	183637500	+	0	NA	intron (NM_001349422, intron 2 of 7)	CpG-20502	1277	NR_146170	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
227541	chr9	91775321	91775680	+	0	NA	intron (NM_001318204, intron 2 of 7)	intron (NM_001318204, intron 2 of 7)	-139155	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
6244	chr1	27548001	27548200	+	0	NA	exon (NM_001371928, exon 8 of 9)	exon (NM_001371928, exon 8 of 9)	55394	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
191749	chr6	13812201	13812430	+	0	NA	intron (NM_001031713, intron 1 of 8)	intron (NM_001031713, intron 1 of 8)	2245	NM_001031713	63933		NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
208411	chr7	66739051	66739150	+	0	NA	intron (NM_001367727, intron 4 of 11)	AluSp|SINE|Alu	-1633	NM_001287062	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
222412	chr8	134475251	134475550	+	0	NA	Intergenic	Intergenic	-122671	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
19706	chr1	181087101	181087580	+	0	NA	Intergenic	Intergenic	-1360	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
88354	chr16	84567501	84568180	+	0	NA	intron (NM_021149, intron 3 of 3)	intron (NM_021149, intron 3 of 3)	50238	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
151207	chr21	45140121	45140670	+	0	NA	intron (NR_027673, intron 3 of 12)	MER90a|LTR|ERV1	-12135	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
201481	chr6	148835921	148836250	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	89055	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
76634	chr15	75580621	75580880	+	0	NA	Intergenic	AluY|SINE|Alu	-1435	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
49305	chr12	21456151	21456880	+	0	NA	intron (NM_001350913, intron 6 of 10)	Tigger1|DNA|TcMar-Tigger	18600	NM_001350912	79912		NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
82115	chr16	14672771	14672930	+	0	NA	intron (NM_003561, intron 3 of 3).2	intron (NM_003561, intron 3 of 3).2	21458	NM_003561	8399		NM_003561	ENSG00000069764	PLA2G10	GXPLA2|GXSPLA2|SPLA2|sPLA2-X	phospholipase A2 group X	protein-coding
26049	chr10	12507451	12507750	+	0	NA	intron (NM_001351032, intron 3 of 11)	MER91A|DNA|hAT-Tip100	-71153	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
51268	chr12	51084971	51085130	+	0	NA	Intergenic	L2a|LINE|L2	-1454	NM_030809	81566		NM_030809	ENSG00000110925	CSRNP2	C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12	cysteine and serine rich nuclear protein 2	protein-coding
95003	chr17	32370501	32370900	+	0	NA	TTS (NM_003457)	TTS (NM_003457)	20543	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
161640	chr3	43302021	43302730	+	0	NA	intron (NM_017719, intron 2 of 6)	intron (NM_017719, intron 2 of 6)	15835	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
98026	chr17	45405301	45405950	+	0	NA	non-coding (NR_169603, exon 2 of 16)	non-coding (NR_169603, exon 2 of 16)	4761	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
196716	chr6	45021701	45022130	+	0	NA	intron (NM_001350327, intron 2 of 9)	intron (NM_001350327, intron 2 of 9)	175855	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
207823	chr7	50320551	50320850	+	0	NA	intron (NM_006060, intron 2 of 7)	intron (NM_006060, intron 2 of 7)	1652	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
119502	chr19	40480051	40480550	+	0	NA	intron (NM_020971, intron 2 of 35)	AluJr|SINE|Alu	13299	NM_020971	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
229264	chr9	117825801	117826400	+	0	NA	Intergenic	Intergenic	121697	NM_003266	7099		NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll like receptor 4	protein-coding
150659	chr21	43424121	43424730	+	0	NA	intron (NM_173354, intron 3 of 13)	intron (NM_173354, intron 3 of 13)	2706	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
72391	chr15	31379901	31380100	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	53165	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
31599	chr10	97361121	97361880	+	0	NA	intron (NM_015179, intron 30 of 33)	intron (NM_015179, intron 30 of 33)	-26771	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
14294	chr1	143789571	143789730	+	0	NA	Intergenic	Intergenic	-2845	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
35591	chr11	1748401	1749750	+	0	NA	intron (NM_001170820, intron 1 of 2)	CpG	1520	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
136969	chr2	190418021	190418280	+	0	NA	intron (NM_017694, intron 2 of 7)	MIR|SINE|MIR	9292	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
206967	chr7	38304271	38304900	+	0	NA	Intergenic	Intergenic	-30938	NM_001003806	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
23751	chr1	232635721	232636150	+	0	NA	Intergenic	Intergenic	-5439	NM_001377488	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
142848	chr20	17609971	17611060	+	0	NA	TTS (NM_001011546)	TTS (NM_001011546)	40440	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
86070	chr16	57605051	57605350	+	0	NA	Intergenic	Intergenic	-14538	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
138320	chr2	203750321	203751400	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	44221	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123520	chr19	54224001	54224200	+	0	NA	Intergenic	Intergenic	-1093	NR_135496	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
82476	chr16	17238421	17238680	+	0	NA	intron (NM_022166, intron 3 of 11)	MER58A|DNA|hAT-Charlie	104046	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
56393	chr12	113196721	113197300	+	0	NA	intron (NM_138451, intron 2 of 2)	L2a|LINE|L2	11289	NM_032848	84934		NM_032848	ENSG00000139405	RITA1	C12orf52|RITA	RBPJ interacting and tubulin associated 1	protein-coding
187532	chr5	142655621	142655980	+	0	NA	intron (NM_001354962, intron 1 of 2)	intron (NM_001354962, intron 1 of 2)	-11499	NM_001257210	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
58257	chr12	128813251	128813350	+	0	NA	intron (NM_145648, intron 2 of 7)	AluJb|SINE|Alu	10658	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
150909	chr21	44206521	44207800	+	0	NA	Intergenic	Intergenic	33783	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
74112	chr15	53197451	53197550	+	0	NA	Intergenic	Intergenic	81135	NR_147181	105370822		NR_147181	ENSG00000259237	LINC02490	-	long intergenic non-protein coding RNA 2490	ncRNA
194414	chr6	33071401	33072000	+	0	NA	intron (NM_001242525, intron 2 of 5).8	intron (NM_001242525, intron 2 of 5).8	1977	NM_033554	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
173459	chr4	8427851	8429000	+	0	NA	promoter-TSS (NM_001375783)	promoter-TSS (NM_001375783)	23	NM_001375787	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
126013	chr2	25325921	25326180	+	0	NA	intron (NR_135490, intron 1 of 23)	ERVL-E-int|LTR|ERVL	2671	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
13418	chr1	114093671	114093900	+	0	NA	3' UTR (NM_001270805, exon 7 of 8)	3' UTR (NM_001270805, exon 7 of 8)	58655	NM_205848	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
54782	chr12	94203771	94204130	+	0	NA	intron (NM_005761, intron 4 of 30)	MSTD|LTR|ERVL-MaLR	55373	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
87480	chr16	71768701	71769380	+	0	NA	intron (NM_001030007, intron 6 of 23)	AluSq2|SINE|Alu	-10553	NR_003059	692111		NR_003059	ENSG00000223224	SNORD71	HBII-239|MIRN768|hsa-mir-768	small nucleolar RNA, C/D box 71	snoRNA
52659	chr12	56315201	56316730	+	0	NA	promoter-TSS (NM_014255)	promoter-TSS (NM_014255)	23	NM_014255	10330		NM_014255	ENSG00000257727	CNPY2	HP10390|MSAP|TMEM4|ZSIG9	canopy FGF signaling regulator 2	protein-coding
50091	chr12	44842521	44843030	+	0	NA	intron (NM_001145108, intron 2 of 19)	MLT1C|LTR|ERVL-MaLR	32886	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
236062	chrX	56386221	56386480	+	0	NA	Intergenic	MER84-int|LTR|ERV1	153192	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
35262	chr11	863501	863900	+	0	NA	intron (NM_001025235, intron 4 of 8)	intron (NM_001025235, intron 4 of 8)	19254	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
19502	chr1	175189851	175189950	+	0	NA	intron (NM_001162894, intron 1 of 3)	MIRc|SINE|MIR	2876	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
209913	chr7	92247971	92248200	+	0	NA	intron (NM_019004, intron 1 of 19)	intron (NM_019004, intron 1 of 19)	-1985	NM_001350676	889		NM_004912	ENSG00000001631	KRIT1	CAM|CCM1	KRIT1 ankyrin repeat containing	protein-coding
220790	chr8	102647571	102647930	+	0	NA	Intergenic	Intergenic	6214	NR_103759	7071		NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	KLF transcription factor 10	protein-coding
95361	chr17	35864571	35865400	+	0	NA	intron (NM_152781, intron 3 of 14).2	intron (NM_152781, intron 3 of 14).2	3906	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
91369	chr17	4542121	4542380	+	0	NA	intron (NM_014520, intron 22 of 25)	intron (NM_014520, intron 22 of 25)	13134	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
101040	chr17	64797171	64797330	+	0	NA	intron (NR_024386, intron 7 of 10)	intron (NR_024386, intron 7 of 10)	-15251	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
211541	chr7	105391321	105391580	+	0	NA	Intergenic	AluSp|SINE|Alu	-2060	NM_001350740	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
209282	chr7	75926921	75927380	+	0	NA	intron (NM_001382657, intron 2 of 16)	MIRb|SINE|MIR	11953	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
81715	chr16	11257201	11257750	+	0	NA	Intergenic	Intergenic	-1293	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
24219	chr1	236138501	236139100	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-3739	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
145745	chr20	45095601	45096350	+	0	NA	intron (NM_002251, intron 4 of 4)	MER20|DNA|hAT-Charlie	5152	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
204125	chr7	2313921	2315550	+	0	NA	promoter-TSS (NM_013321)	promoter-TSS (NM_013321)	-294	NM_013321	29886		NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
139984	chr2	230920221	230920680	+	0	NA	intron (NM_005683, intron 1 of 1)	intron (NM_005683, intron 1 of 1)	4792	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
129067	chr2	65077971	65078400	+	0	NA	intron (NM_015147, intron 5 of 6)	intron (NM_015147, intron 5 of 6)	21769	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
77929	chr15	89320671	89321200	+	0	NA	exon (NM_001126131, exon 18 of 23)	exon (NM_001126131, exon 18 of 23)	5875	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
226289	chr9	68323871	68324100	+	0	NA	Intergenic	Intergenic	21118	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
97041	chr17	42321771	42322150	+	0	NA	intron (NM_001369519, intron 21 of 23)	AluJb|SINE|Alu	33904	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
81674	chr16	11094951	11095250	+	0	NA	intron (NM_001243403, intron 18 of 20)	(T)n|Simple_repeat|Simple_repeat	150536	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
4633	chr1	22119151	22119450	+	0	NA	3' UTR (NM_030761, exon 5 of 5)	3' UTR (NM_030761, exon 5 of 5)	23797	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
18550	chr1	162563371	162564100	+	0	NA	intron (NM_001324115, intron 2 of 10)	intron (NM_001324115, intron 2 of 10)	1836	NM_001324114	6675		NM_003115	ENSG00000117143	UAP1	AGX|AGX1|AGX2|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
15621	chr1	150622451	150623130	+	0	NA	TTS (NM_207044)	TTS (NM_207044)	6343	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
11629	chr1	91739051	91739350	+	0	NA	intron (NR_036634, intron 5 of 17)	L2a|LINE|L2	146951	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
220461	chr8	100415521	100416490	+	0	NA	Intergenic	Intergenic	33242	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
54991	chr12	96350371	96350530	+	0	NA	intron (NM_002595, intron 1 of 16)	L1MB4|LINE|L1	49989	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
73907	chr15	50739151	50739250	+	0	NA	intron (NM_032802, intron 6 of 14)	AluSp|SINE|Alu	26506	NM_032802	84888		NM_032802	ENSG00000138600	SPPL2A	IMD86|IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
128406	chr2	55226571	55226930	+	0	NA	intron (NM_001353787, intron 1 of 9)	AluSz|SINE|Alu	-5153	NM_001135592	6233		NM_002954	ENSG00000143947	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80|eS31	ribosomal protein S27a	protein-coding
140312	chr2	232487401	232488180	+	0	NA	promoter-TSS (NM_004826)	promoter-TSS (NM_004826)	44	NM_001290787	9427		NM_004826	ENSG00000171551	ECEL1	DA5D|DINE|ECEX|XCE	endothelin converting enzyme like 1	protein-coding
214774	chr7	151095201	151095680	+	0	NA	intron (NM_001350103, intron 1 of 18)	intron (NM_001350103, intron 1 of 18)	8965	NM_001350103	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
196133	chr6	42407271	42408150	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	44341	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
37153	chr11	13628651	13628780	+	0	NA	Intergenic	L1PA4|LINE|L1	-39953	NM_032228	84188		NM_032228	ENSG00000197601	FAR1	CSPSD|MLSTD2|PFCRD|SDR10E1	fatty acyl-CoA reductase 1	protein-coding
99960	chr17	57454921	57455800	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	68237	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
48139	chr12	7908821	7909300	+	0	NA	Intergenic	AluSx|SINE|Alu	-17864	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
231220	chr9	129961701	129962200	+	0	NA	intron (NM_001363755, intron 4 of 15)	intron (NM_001363755, intron 4 of 15)	81239	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
158423	chr22	50545501	50546550	+	0	NA	5' UTR (NM_138433, exon 1 of 1)	5' UTR (NM_138433, exon 1 of 1)	126	NM_138433	113730		NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
15570	chr1	150559751	150560500	+	0	NA	TTS (NR_104133)	TTS (NR_104133)	8196	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
40170	chr11	62888271	62888880	+	0	NA	exon (NM_001013251, exon 9 of 9)	exon (NM_001013251, exon 9 of 9)	6876	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
81927	chr16	11768921	11769180	+	0	NA	exon (NM_014153, exon 11 of 23)	exon (NM_014153, exon 11 of 23)	-26193	NR_136671	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
99995	chr17	57783121	57783580	+	0	NA	Intergenic	Intergenic	-38051	NM_001282544	101927581		NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
20643	chr1	200035601	200036350	+	0	NA	intron (NM_003822, intron 1 of 6)	intron (NM_003822, intron 1 of 6)	-6850	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
94507	chr17	29389971	29392030	+	0	NA	promoter-TSS (NM_025142)	promoter-TSS (NM_025142)	75	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
17015	chr1	156040001	156040200	+	0	NA	intron (NM_020131, intron 10 of 10)	intron (NM_020131, intron 10 of 10)	13698	NM_001304342	56893		NM_020131	ENSG00000160803	UBQLN4	A1U|A1Up|C1orf6|CIP75|UBIN	ubiquilin 4	protein-coding
169803	chr3	176939071	176939230	+	0	NA	Intergenic	Intergenic	-122149	NR_110819	101928684		NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
216476	chr8	19756151	19757400	+	0	NA	intron (NM_001354488, intron 1 of 9)	CpG	308	NM_001354490	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
117346	chr19	19534601	19535080	+	0	NA	intron (NM_198537, intron 3 of 6)	intron (NM_198537, intron 3 of 6)	-3425	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
175131	chr4	55344751	55345330	+	0	NA	Intergenic	AluY|SINE|Alu	-1202	NM_024592	79644		NM_024592	ENSG00000128039	SRD5A3	CDG1P|CDG1Q|KRIZI|S5AR|S5AR 3|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
234621	chrX	19846921	19847500	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	-14059	NM_001353895	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
121891	chr19	48366671	48367030	+	0	NA	intron (NM_012451, intron 2 of 4)	MER3|DNA|hAT-Charlie	2483	NM_012451	23546		NM_012451	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding
109312	chr19	578421	578750	+	0	NA	intron (NM_001728, intron 2 of 8)	intron (NM_001728, intron 2 of 8)	5989	NM_198589	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
225957	chr9	41107521	41108730	+	0	NA	promoter-TSS (NR_015361)	promoter-TSS (NR_015361)	-313	NR_015361	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
193592	chr6	30704251	30704630	+	0	NA	exon (NM_014641, exon 10 of 15).3	exon (NM_014641, exon 10 of 15).3	1373	NR_133647	106478956		NR_133647	ENSG00000224328	MDC1-AS1	MDC1-AS	MDC1 antisense RNA 1	ncRNA
157732	chr22	46587421	46588280	+	0	NA	intron (NM_001366660, intron 1 of 17)	intron (NM_001366660, intron 1 of 17)	10762	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
89731	chr16	89428171	89428330	+	0	NA	intron (NR_045839, intron 1 of 9)	AluY|SINE|Alu	-2668	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
55277	chr12	102954351	102954450	+	0	NA	intron (NM_001354304, intron 1 of 13)	intron (NM_001354304, intron 1 of 13)	-3274	NM_004316	429		NM_004316	ENSG00000139352	ASCL1	ASH1|HASH1|MASH1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding
152655	chr22	21567401	21568680	+	0	NA	non-coding (NR_046082, exon 1 of 4)	intron (NM_003347, intron 1 of 3)	326	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
2147	chr1	8390001	8390200	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	33732	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
214673	chr7	150955621	150955880	+	0	NA	promoter-TSS (NM_001204798)	promoter-TSS (NM_001204798)	54	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
41220	chr11	65699951	65700150	+	0	NA	Intergenic	MER66-int|LTR|ERV1	-12202	NM_182710	10524		NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|NEDFASB|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
171400	chr3	196195551	196196090	+	0	NA	Intergenic	Intergenic	15580	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
208579	chr7	72878801	72880980	+	0	NA	intron (NM_001257190, intron 1 of 15)	CpG	533	NM_001257190	9883		NM_014833	ENSG00000196313	POM121	P145|POM121A	POM121 transmembrane nucleoporin	protein-coding
225607	chr9	36167671	36167830	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1638	NM_005893	881		NM_005893	ENSG00000185972	CCIN	BTBD20|KBTBD14	calicin	protein-coding
123377	chr19	53904101	53904500	+	0	NA	intron (NM_001316329, intron 15 of 18)	intron (NM_001316329, intron 15 of 18)	-4978	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
138577	chr2	207746001	207746300	+	0	NA	intron (NM_001330218, intron 7 of 9)	intron (NM_001330218, intron 7 of 9)	-8657	NR_039934	100616361		NR_039934	ENSG00000284079	MIR4775	-	microRNA 4775	ncRNA
59173	chr13	21849321	21849600	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	28700	NR_047040	100874182		NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
195206	chr6	36118171	36119050	+	0	NA	Intergenic	Intergenic	-11903	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
152905	chr22	22752971	22753930	+	0	NA	Intergenic	Intergenic	-69326	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
25638	chr10	8160221	8160350	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	105597	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
126319	chr2	27325001	27325600	+	0	NA	TTS (NM_001035521)	TTS (NM_001035521)	-2203	NM_002437	4358		NM_002437	ENSG00000115204	MPV17	CMT2EE|MTDPS6|SYM1	mitochondrial inner membrane protein MPV17	protein-coding
73336	chr15	41972201	41973880	+	0	NA	promoter-TSS (NM_139265)	promoter-TSS (NM_139265)	277	NR_120334	101928388		NR_120334	ENSG00000246740	PLA2G4E-AS1	-	PLA2G4E antisense RNA 1	ncRNA
72856	chr15	40256321	40257000	+	0	NA	intron (NM_001128628, intron 3 of 10)	MIRb|SINE|MIR	3482	NM_001276717	56924		NM_020168	ENSG00000137843	PAK6	PAK5	p21 (RAC1) activated kinase 6	protein-coding
42557	chr11	71797101	71797300	+	0	NA	intron (NR_073388, intron 3 of 3)	AluJb|SINE|Alu	16659	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
203642	chr7	973521	976280	+	0	NA	intron (NM_001031617, intron 1 of 2)	AluSz|SINE|Alu	649	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
115980	chr19	17069321	17069900	+	0	NA	intron (NM_001011699, intron 2 of 10)	intron (NM_001011699, intron 2 of 10)	5842	NM_033417	93323		NM_033417	ENSG00000131351	HAUS8	DGT4|HICE1|NY-SAR-48	HAUS augmin like complex subunit 8	protein-coding
5677	chr1	26340021	26340280	+	0	NA	intron (NM_001039775, intron 5 of 19)	intron (NM_001039775, intron 5 of 19)	13980	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
210058	chr7	95501251	95501700	+	0	NA	intron (NM_145872, intron 2 of 2)	intron (NM_145872, intron 2 of 2)	15532	NM_016116	51666		NM_016116	ENSG00000005981	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
143089	chr20	22691701	22691930	+	0	NA	Intergenic	Intergenic	-6471	NR_146527	105372566		NR_146527		LINC01747	-	long intergenic non-protein coding RNA 1747	ncRNA
76018	chr15	71802771	71803030	+	0	NA	Intergenic	Intergenic	-7654	NM_014249	10002		NM_014249	ENSG00000278570	NR2E3	ESCS|PNR|RNR|RP37|rd7	nuclear receptor subfamily 2 group E member 3	protein-coding
154378	chr22	34396471	34396700	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	-473761	NM_001362949	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
137021	chr2	190692601	190692830	+	0	NA	TTS (NM_001321312)	TTS (NM_001321312)	33557	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
62404	chr13	99286071	99286630	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	21049	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
121397	chr19	46945051	46945200	+	0	NA	intron (NM_004491, intron 3 of 6)	intron (NM_004491, intron 3 of 6)	-74712	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
117073	chr19	19063371	19065950	+	0	NA	intron (NM_178526, intron 1 of 7)	(TCTGCCC)n|Simple_repeat|Simple_repeat	666	NM_178526	284439		NM_178526	ENSG00000181035	SLC25A42	MECREN	solute carrier family 25 member 42	protein-coding
93237	chr17	17854901	17855630	+	0	NA	intron (NM_001082968, intron 12 of 14)	intron (NM_001082968, intron 12 of 14)	-18254	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
43761	chr11	86201301	86201600	+	0	NA	Intergenic	Intergenic	-42934	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
55757	chr12	108518651	108518750	+	0	NA	exon (NM_007076, exon 3 of 3)	exon (NM_007076, exon 3 of 3)	3423	NM_007076	11153		NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain protein adenylyltransferase	protein-coding
283	chr1	939021	939480	+	0	NA	intron (NM_001385641, intron 6 of 13)	intron (NM_001385641, intron 6 of 13)	13519	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
220338	chr8	98973351	98974080	+	0	NA	Intergenic	CpG	29273	NM_001142462	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
152532	chr22	20980421	20980700	+	0	NA	intron (NM_001146288, intron 19 of 19)	intron (NM_001146288, intron 19 of 19)	-1737	NM_006767	8216		NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|NS2|SWNTS2	leucine zipper like post translational regulator 1	protein-coding
5625	chr1	26165351	26166030	+	0	NA	TTS (NM_001364667)	TTS (NM_001364667)	2892	NM_001364667	110806296		NM_001364667	ENSG00000282872	C1orf232	-	chromosome 1 open reading frame 230	protein-coding
26310	chr10	15086921	15087280	+	0	NA	intron (NM_001039844, intron 1 of 3)	AluJo|SINE|Alu	1676	NR_144471	108949267		NR_144471		ACBD7-DCLRE1CP1	-	ACBD7-DCLRE1CP1 readthrough	ncRNA
230629	chr9	128642471	128643030	+	0	NA	intron (NM_052844, intron 1 of 8)	AluY|SINE|Alu	14100	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
165504	chr3	100259471	100259830	+	0	NA	Intergenic	Intergenic	-1342	NM_018309	55773		NM_018309	ENSG00000036054	TBC1D23	NS4ATP1|PCH11	TBC1 domain family member 23	protein-coding
100627	chr17	63602221	63602480	+	0	NA	intron (NM_016360, intron 1 of 4)	MIRb|SINE|MIR	1455	NM_016360	51204		NM_016360	ENSG00000136463	TACO1	CCDC44|MC4DN8	translational activator of cytochrome c oxidase I	protein-coding
176885	chr4	102762301	102762500	+	0	NA	Intergenic	AluSz|SINE|Alu	-1432	NM_005908	4126		NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
191572	chr6	12006051	12006350	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-4956	NR_125853	101928253		NR_125853	ENSG00000225102	LOC101928253	-	uncharacterized LOC101928253	ncRNA
123871	chr19	55274371	55275130	+	0	NA	intron (NM_001130106, intron 4 of 8)	MLT1B|LTR|ERVL-MaLR	5106	NM_001297600	23640		NM_012267	ENSG00000133265	HSPBP1	FES1	HSPA (Hsp70) binding protein 1	protein-coding
202121	chr6	154783551	154783850	+	0	NA	intron (NM_001286199, intron 4 of 20)	intron (NM_001286199, intron 4 of 20)	50284	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
72021	chr15	28100551	28101250	+	0	NA	Intergenic	Intergenic	-1585	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
228122	chr9	96651571	96652000	+	0	NA	intron (NM_153698, intron 2 of 5)	intron (NM_153698, intron 2 of 5)	3532	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
225365	chr9	34884771	34885150	+	0	NA	Intergenic	Intergenic	10804	NM_001375894	100129969		NM_001309426	ENSG00000187791	SPATA31F3	FAM205C|FAM205CP	SPATA31 subfamily F member 3	protein-coding
211325	chr7	104231271	104231780	+	0	NA	Intergenic	Intergenic	-23478	NM_181747	5001		NM_002553	ENSG00000164815	ORC5	ORC5L|ORC5P|ORC5T|PPP1R117	origin recognition complex subunit 5	protein-coding
147429	chr20	58900501	58900800	+	0	NA	TTS (NM_001309842)	TTS (NM_001309842)	8487	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
57385	chr12	121811501	121813680	+	0	NA	intron (NM_001353345, intron 6 of 16)	intron (NM_001353345, intron 6 of 16)	8581	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
114726	chr19	13181071	13181230	+	0	NA	Intergenic	Intergenic	30739	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
133481	chr2	119927271	119927630	+	0	NA	intron (NM_002830, intron 13 of 26)	L2|LINE|L2	-85627	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
61606	chr13	73274951	73275300	+	0	NA	Intergenic	Intergenic	216120	NM_001730	688		NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	KLF transcription factor 5	protein-coding
92949	chr17	17017371	17017680	+	0	NA	Intergenic	L2|LINE|L2	-24932	NM_001364716	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
87266	chr16	69987401	69987600	+	0	NA	intron (NR_003610, intron 20 of 25)	MER30|DNA|hAT-Charlie	36387	NM_001370523	348174		NM_182619	ENSG00000157322	CLEC18A	MRCL|MRCL1|MRLP2	C-type lectin domain family 18 member A	protein-coding
153209	chr22	23893201	23894700	+	0	NA	promoter-TSS (NM_002415)	promoter-TSS (NM_002415)	-433	NM_002415	4282		NM_002415	ENSG00000240972	MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor	protein-coding
191465	chr6	11043151	11043250	+	0	NA	promoter-TSS (NR_038963)	promoter-TSS (NR_038963)	-558	NR_038963	100506409		NR_038962	ENSG00000230314	ELOVL2-AS1	-	ELOVL2 antisense RNA 1	ncRNA
198668	chr6	107849351	107849450	+	0	NA	Intergenic	AluJb|SINE|Alu	-25087	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
56023	chr12	110402101	110402300	+	0	NA	promoter-TSS (NM_001385208)	promoter-TSS (NM_001385208)	-251	NM_001385208	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
116424	chr19	18012571	18013000	+	0	NA	intron (NM_001286826, intron 7 of 7)	intron (NM_001286826, intron 7 of 7)	4615	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
149627	chr21	33405121	33405380	+	0	NA	intron (NM_005534, intron 1 of 6)	intron (NM_005534, intron 1 of 6)	1837	NM_005534	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
86463	chr16	66941501	66942100	+	0	NA	exon (NM_001365408, exon 8 of 12)	exon (NM_001365408, exon 8 of 12)	6284	NM_198061	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
185577	chr5	131388171	131388530	+	0	NA	intron (NM_001038702, intron 3 of 4)	intron (NM_001038702, intron 3 of 4)	124297	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
50321	chr12	46675701	46675950	+	0	NA	Intergenic	Intergenic	150172	NM_018018	55089		NM_018018	ENSG00000139209	SLC38A4	ATA3|NAT3|PAAT|SNAT4	solute carrier family 38 member 4	protein-coding
38762	chr11	47159671	47160030	+	0	NA	intron (NM_001003676, intron 7 of 7)	AluSp|SINE|Alu	17029	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
193747	chr6	31270421	31270570	+	0	NA	intron (NM_001243042, intron 3 of 7).3	intron (NM_001243042, intron 3 of 7).3	1597	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
31825	chr10	99523321	99523630	+	0	NA	Intergenic	Intergenic	7702	NR_120618	101927324		NR_120618	ENSG00000257582	LINC01475	-	long intergenic non-protein coding RNA 1475	ncRNA
83984	chr16	29369071	29369230	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	35395	NM_001310137	728888		NM_001310137	ENSG00000254206	NPIPB11	NPIP	nuclear pore complex interacting protein family member B11	protein-coding
159558	chr3	14857401	14857600	+	0	NA	intron (NM_152536, intron 1 of 19)	intron (NM_152536, intron 1 of 19)	38538	NM_001320276	152273		NM_152536	ENSG00000154783	FGD5	ZFYVE23	FYVE, RhoGEF and PH domain containing 5	protein-coding
48337	chr12	9238451	9238750	+	0	NA	TTS (NR_036262)	TTS (NR_036262)	951	NR_036262	100422885		NR_036262	ENSG00000283498	MIR1244-2	-	microRNA 1244-2	ncRNA
155777	chr22	39242801	39243980	+	0	NA	intron (NM_002608, intron 1 of 6)	CpG	1592	NM_002608	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
33376	chr10	117373471	117374700	+	0	NA	intron (NM_173791, intron 1 of 4)	intron (NM_173791, intron 1 of 4)	1355	NM_173791	118987		NM_173791	ENSG00000165650	PDZD8	IDDADF|PDZK8	PDZ domain containing 8	protein-coding
130644	chr2	86139971	86140930	+	0	NA	3' UTR (NM_017952, exon 24 of 24)	3' UTR (NM_017952, exon 24 of 24)	4580	NR_004378	692225		NR_004378	ENSG00000208772	SNORD94	U94	small nucleolar RNA, C/D box 94	snoRNA
141251	chr2	239751521	239751980	+	0	NA	Intergenic	Intergenic	-11110	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
70447	chr14	102050501	102050700	+	0	NA	3' UTR (NM_001376, exon 78 of 78)	3' UTR (NM_001376, exon 78 of 78)	36444	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
206355	chr7	30472071	30472430	+	0	NA	intron (NM_001354849, intron 1 of 12)	L2b|LINE|L2	6534	NM_006092	10392		NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1|hNod1	nucleotide binding oligomerization domain containing 1	protein-coding
60533	chr13	41453271	41453430	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-4200	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
59008	chr13	20158721	20158980	+	0	NA	intron (NM_021954, intron 1 of 1)	AluSq2|SINE|Alu	2202	NM_021954	2700		NM_021954	ENSG00000121743	GJA3	CTRCT14|CX46|CZP3	gap junction protein alpha 3	protein-coding
227416	chr9	89603051	89603800	+	0	NA	Intergenic	Intergenic	-1587	NM_006705	10912		NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
189758	chr5	176627471	176627830	+	0	NA	intron (NM_003085, intron 2 of 5)	intron (NM_003085, intron 2 of 5)	1850	NR_036239	100422962		NR_036239	ENSG00000266329	MIR4281	-	microRNA 4281	ncRNA
168322	chr3	141686501	141687200	+	0	NA	intron (NR_136190, intron 5 of 7)	MLT1K|LTR|ERVL-MaLR	23651	NR_136190	646730		NR_136190		LINC02618	-	long intergenic non-protein coding RNA 2618	ncRNA
224469	chr9	15554211	15554630	+	0	NA	intron (NM_173550, intron 1 of 25)	MIR3|SINE|MIR	1377	NM_173550	203238		NM_173550	ENSG00000164989	CCDC171	C9orf93|bA536D16.1|bA778P13.1	coiled-coil domain containing 171	protein-coding
165165	chr3	72343121	72343380	+	0	NA	Intergenic	Intergenic	103373	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
208546	chr7	70696471	70696630	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-435594	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
89120	chr16	88501121	88501780	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	29603	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
1463	chr1	2677321	2677580	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-44434	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
199219	chr6	111806801	111807000	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-46983	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
228297	chr9	98103671	98104030	+	0	NA	intron (NM_014788, intron 2 of 5)	AluSc|SINE|Alu	15372	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
185320	chr5	126786101	126786500	+	0	NA	intron (NR_134488, intron 1 of 11)	AluY|SINE|Alu	9164	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
198696	chr6	108116671	108116830	+	0	NA	Intergenic	Intergenic	-6883	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
151250	chr21	45303301	45303700	+	0	NA	Intergenic	Intergenic	15448	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
101454	chr17	67451421	67451880	+	0	NA	intron (NM_181671, intron 1 of 9)	AluYm1|SINE|Alu	-19839	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
10268	chr1	64550421	64550880	+	0	NA	exon (NM_020925, exon 2 of 27)	exon (NM_020925, exon 2 of 27)	-29197	NR_039957	100616338		NR_039957	ENSG00000264470	MIR4794	-	microRNA 4794	ncRNA
238453	chrX	152912201	152912400	+	0	NA	Intergenic	Intergenic	-2142	NM_001178108	7739		NM_007150	ENSG00000147394	ZNF185	SCELL	zinc finger protein 185 with LIM domain	protein-coding
91167	chr17	3791051	3791800	+	0	NA	intron (NM_002208, intron 1 of 30)	AluSx|SINE|Alu	9763	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
161947	chr3	46207451	46207550	+	0	NA	intron (NM_001295, intron 1 of 1)	intron (NM_001295, intron 1 of 1)	813	NM_001295	1230		NM_001295	ENSG00000163823	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	C-C motif chemokine receptor 1	protein-coding
179734	chr5	217401	219200	+	0	NA	promoter-TSS (NM_001294332)	promoter-TSS (NM_001294332)	-20	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
235915	chrX	53081401	53083080	+	0	NA	promoter-TSS (NM_022117)	promoter-TSS (NM_022117)	-127	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
154901	chr22	37169571	37169730	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	5406	NM_001346223	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
128094	chr2	47902701	47902900	+	0	NA	intron (NM_001190274, intron 1 of 22)	intron (NM_001190274, intron 1 of 22)	2538	NM_001374325	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
160138	chr3	20059851	20059950	+	0	NA	intron (NM_003884, intron 1 of 17)	L1MB8|LINE|L1	19454	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
23271	chr1	227931821	227932100	+	0	NA	intron (NM_003395, intron 1 of 3)	AluSx3|SINE|Alu	9723	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
207241	chr7	43778571	43778980	+	0	NA	intron (NM_000712, intron 2 of 7)	L1PA4|LINE|L1	20095	NM_000712	644		NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA|BVRalpha	biliverdin reductase A	protein-coding
117379	chr19	19584201	19584600	+	0	NA	intron (NM_025245, intron 2 of 7)	intron (NM_025245, intron 2 of 7)	34287	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
216449	chr8	19512851	19513150	+	0	NA	intron (NM_001354497, intron 1 of 7)	L2|LINE|L2	89545	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
229786	chr9	125237771	125238880	+	0	NA	intron (NM_005347, intron 6 of 7)	intron (NM_005347, intron 6 of 7)	3018	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
65548	chr14	51929301	51929500	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-10829	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
198940	chr6	110534671	110534830	+	0	NA	Intergenic	LTR8|LTR|ERV1	-58137	NM_033125	85413		NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
130743	chr2	86793501	86794180	+	0	NA	intron (NR_168478, intron 2 of 7)	intron (NR_168478, intron 2 of 7)	-2126	NR_027353	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
236178	chrX	65597601	65597880	+	0	NA	Intergenic	MIR3|SINE|MIR	-45319	NR_033742	83957		NM_032033	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
171622	chr3	197458121	197458780	+	0	NA	Intergenic	Intergenic	51211	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
144650	chr20	36062571	36062730	+	0	NA	Intergenic	MER66B|LTR|ERV1	-11690	NR_027451	647979		NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
85864	chr16	57033551	57033650	+	0	NA	intron (NM_001384955, intron 11 of 47)	intron (NM_001384955, intron 11 of 47)	44043	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
187905	chr5	148837671	148837900	+	0	NA	Intergenic	Intergenic	11174	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
68116	chr14	75488251	75488350	+	0	NA	Intergenic	AluSx3|SINE|Alu	-34169	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
143383	chr20	28593451	28593700	+	0	NA	intron (NR_132315, intron 2 of 8)	L1M4|LINE|L1	9090	NR_132315	100289097		NR_132315	ENSG00000282826	FRG1CP	-	FSHD region gene 1 family member C, pseudogene	pseudo
103118	chr17	77377351	77377450	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	1317	NM_001113494	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
180862	chr5	32606671	32607100	+	0	NA	Intergenic	Intergenic	21328	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
179633	chr4	186160971	186161350	+	0	NA	intron (NM_001350178, intron 8 of 13)	intron (NM_001350178, intron 8 of 13)	16273	NM_015398	25854		NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
154651	chr22	36338501	36338730	+	0	NA	intron (NM_002473, intron 3 of 40)	AluSx3|SINE|Alu	49352	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
78464	chr15	92887171	92887650	+	0	NA	intron (NR_037600, intron 3 of 4)	intron (NR_037600, intron 3 of 4)	4114	NR_037602	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
97610	chr17	44126651	44127150	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3259	NM_001382393	10014		NM_005474	ENSG00000108840	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
232625	chr9	136447521	136447780	+	0	NA	exon (NM_001276418, exon 25 of 29)	exon (NM_001276418, exon 25 of 29)	-7805	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
58777	chr12	132720151	132720500	+	0	NA	intron (NM_001170544, intron 5 of 5)	AluY|SINE|Alu	9483	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
182732	chr5	68264221	68264730	+	0	NA	intron (NM_181523, intron 2 of 15)	MIRb|SINE|MIR	-24044	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
119935	chr19	41859371	41860900	+	0	NA	promoter-TSS (NM_001321485)	promoter-TSS (NM_001321485)	-120	NM_001321485	6223		NM_001022	ENSG00000105372	RPS19	DBA|DBA1|LOH19CR1|S19|eS19	ribosomal protein S19	protein-coding
45892	chr11	120229801	120230000	+	0	NA	3' UTR (NM_178507, exon 4 of 4)	3' UTR (NM_178507, exon 4 of 4)	-6738	NM_001244682	25833		NM_014352	ENSG00000137709	POU2F3	Epoc-1|OCT-11|OCT11|OTF-11|PLA-1|PLA1|Skn-1a	POU class 2 homeobox 3	protein-coding
48906	chr12	12562001	12563360	+	0	NA	5' UTR (NM_030640, exon 1 of 7)	5' UTR (NM_030640, exon 1 of 7)	183	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
146374	chr20	49276021	49276780	+	0	NA	intron (NM_021035, intron 1 of 13)	intron (NM_021035, intron 1 of 13)	1657	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
118225	chr19	35184871	35185030	+	0	NA	Intergenic	L1M2|LINE|L1	30215	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
45923	chr11	120909801	120910000	+	0	NA	intron (NM_001282473, intron 13 of 17)	MSTD|LTR|ERVL-MaLR	-15103	NR_132790	101929227		NR_132790	ENSG00000250493	LOC101929227	-	uncharacterized LOC101929227	ncRNA
13850	chr1	117655901	117657550	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	50677	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
12330	chr1	101024171	101024330	+	0	NA	intron (NM_015958, intron 2 of 7)	AluJb|SINE|Alu	1534	NM_001077395	51611		NM_015958	ENSG00000117543	DPH5	AD-018|CGI-30|HSPC143|NEDSFF|NPD015	diphthamide biosynthesis 5	protein-coding
22567	chr1	222654701	222655980	+	0	NA	intron (NM_001324062, intron 18 of 28)	intron (NM_001324062, intron 18 of 28)	11037	NM_001300867	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
187655	chr5	143101001	143101550	+	0	NA	intron (NR_146198, intron 17 of 22)	intron (NR_146198, intron 17 of 22)	-91225	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
144900	chr20	36942671	36942830	+	0	NA	intron (NM_001363733, intron 2 of 15)	AluYm1|SINE|Alu	8958	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
31747	chr10	97771451	97772350	+	0	NA	promoter-TSS (NM_003015)	promoter-TSS (NM_003015)	99	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
239153	chrY	11331551	11331650	+	0	NA	Intergenic	Intergenic	1089990	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
211459	chr7	105090921	105091380	+	0	NA	intron (NM_182931, intron 14 of 26)	intron (NM_182931, intron 14 of 26)	76945	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
74434	chr15	59322221	59322480	+	0	NA	intron (NM_004998, intron 1 of 27)	intron (NM_004998, intron 1 of 27)	50521	NM_004998	4643		NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
68776	chr14	91119651	91119750	+	0	NA	intron (NM_001286471, intron 1 of 13)	MLT2A2|LTR|ERVL	5000	NM_001286471	80017		NM_024952	ENSG00000133943	DGLUCY	C14orf159	D-glutamate cyclase	protein-coding
122694	chr19	49896621	49897300	+	0	NA	promoter-TSS (NM_152899)	promoter-TSS (NM_152899)	-73	NM_152899	259307		NM_152899	ENSG00000104951	IL4I1	FIG1|LAAO|LAO|hIL4I1	interleukin 4 induced 1	protein-coding
147355	chr20	58313311	58314180	+	0	NA	intron (NM_020673, intron 2 of 6)	L2a|LINE|L2	4030	NM_020673	57403		NM_020673	ENSG00000124209	RAB22A	-	RAB22A, member RAS oncogene family	protein-coding
142910	chr20	18012201	18012400	+	0	NA	Intergenic	Intergenic	43282	NM_001310339	92667		NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
237540	chrX	120452271	120452430	+	0	NA	intron (NM_002294, intron 3 of 8)	L2b|LINE|L2	16946	NM_002294	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
85204	chr16	47036301	47036580	+	0	NA	Intergenic	Intergenic	-62766	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
4322	chr1	20482171	20482330	+	0	NA	TTS (NM_018584)	TTS (NM_018584)	3960	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
29765	chr10	72247501	72249700	+	0	NA	Intergenic	Intergenic	-25324	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
186674	chr5	138649851	138650500	+	0	NA	Intergenic	L2a|LINE|L2	-74774	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
78787	chr15	99437371	99437730	+	0	NA	Intergenic	Intergenic	-127867	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
23470	chr1	228616651	228617240	+	0	NA	TTS (NR_023363).4	TTS (NR_023363).4	164	NR_023368	100169757		NR_023368	ENSG00000200624	RNA5S6	RN5S6	RNA, 5S ribosomal 6	rRNA
2073	chr1	7934651	7934950	+	0	NA	intron (NM_001561, intron 6 of 7)	intron (NM_001561, intron 6 of 7)	6039	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
238025	chrX	135096671	135097200	+	0	NA	3' UTR (NM_001348255, exon 2 of 2)	3' UTR (NM_001348255, exon 2 of 2)	1777	NM_001348255	644596		NM_001348255	ENSG00000196972	SMIM10L2B	LINC00086|LINC00087|NCRNA00086|NCRNA00087|SMIM10L2A	small integral membrane protein 10 like 2B	protein-coding
58117	chr12	124882701	124882900	+	0	NA	Intergenic	AluJb|SINE|Alu	-18936	NM_001082959	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
79830	chr16	1435201	1435400	+	0	NA	TTS (NM_001365310)	TTS (NM_001365310)	4222	NM_001365310	105371045		NM_001365310	ENSG00000284395	PERCC1	DIAR11|ICR|gs104	proline and glutamate rich with coiled coil 1	protein-coding
152911	chr22	22762101	22762700	+	0	NA	Intergenic	Intergenic	-60376	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
112991	chr19	7884351	7884950	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-3855	NM_001268284	80131		NM_025061	ENSG00000171017	LRRC8E	-	leucine rich repeat containing 8 VRAC subunit E	protein-coding
96097	chr17	39620801	39621180	+	0	NA	Intergenic	Intergenic	-5962	NM_032192	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
195039	chr6	35484701	35485530	+	0	NA	intron (NM_003214, intron 2 of 12)	intron (NM_003214, intron 2 of 12)	11964	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
184350	chr5	96973001	96973280	+	0	NA	intron (NM_175920, intron 1 of 17)	intron (NM_175920, intron 1 of 17)	14707	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
183683	chr5	80686601	80687300	+	0	NA	intron (NM_002439, intron 8 of 23)	intron (NM_002439, intron 8 of 23)	-31967	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
180998	chr5	35822121	35822880	+	0	NA	Intergenic	Intergenic	-34391	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
18089	chr1	160685051	160685950	+	0	NA	intron (NM_001256030, intron 1 of 2)	intron (NM_001256030, intron 1 of 2)	26322	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
110647	chr19	2238171	2238730	+	0	NA	intron (NM_007165, intron 1 of 8)	HAL1|LINE|L1	1626	NM_007165	8175		NM_007165	ENSG00000104897	SF3A2	PRP11|PRPF11|SAP62|SF3a66	splicing factor 3a subunit 2	protein-coding
7089	chr1	32065151	32065600	+	0	NA	Intergenic	AluY|SINE|Alu	-6656	NM_001319677	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
29790	chr10	72279471	72280330	+	0	NA	Intergenic	AluSz|SINE|Alu	5976	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
74252	chr15	56958701	56959180	+	0	NA	intron (NM_207038, intron 3 of 19)	intron (NM_207038, intron 3 of 19)	39495	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
189570	chr5	175478201	175479550	+	0	NA	intron (NM_001322981, intron 1 of 9)	CpG	315	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
104746	chr17	81677371	81677530	+	0	NA	Intergenic	AluY|SINE|Alu	6263	NM_001329609	339231		NM_001040025	ENSG00000214087	ARL16	-	ADP ribosylation factor like GTPase 16	protein-coding
186773	chr5	139339671	139339830	+	0	NA	Intergenic	AluSg|SINE|Alu	-2082	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
145620	chr20	44670801	44671000	+	0	NA	intron (NR_034104, intron 1 of 4)	HERVH-int|LTR|ERV1	839	NR_034104	79015		NM_024049	ENSG00000283440	LINC01260	-	long intergenic non-protein coding RNA 1260	ncRNA
146241	chr20	48826601	48827300	+	0	NA	intron (NM_020820, intron 1 of 39)	MIR|SINE|MIR	1049	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
1866	chr1	6418201	6418550	+	0	NA	3' UTR (NM_019089, exon 4 of 4)	3' UTR (NM_019089, exon 4 of 4)	1544	NM_019089	54626		NM_019089	ENSG00000069812	HES2	bHLHb40	hes family bHLH transcription factor 2	protein-coding
201345	chr6	144575321	144575780	+	0	NA	intron (NM_007124, intron 49 of 73)	MER44A|DNA|TcMar-Tigger	-7598	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
122793	chr19	50333391	50334650	+	0	NA	promoter-TSS (NR_110912)	promoter-TSS (NR_110912)	-484	NR_110912	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
151964	chr22	19134351	19135500	+	0	NA	intron (NR_134304, intron 9 of 9)	intron (NR_134304, intron 9 of 9)	3617	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
10101	chr1	58958501	58958700	+	0	NA	Intergenic	L1PA5|LINE|L1	-61876	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
49622	chr12	27974701	27974900	+	0	NA	Intergenic	Intergenic	-2067	NM_198965	5744		NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
174288	chr4	38330451	38330950	+	0	NA	Intergenic	LTR50|LTR|ERVL	-36214	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
212141	chr7	116528201	116528400	+	0	NA	intron (NM_001753, intron 2 of 2)	intron (NM_001753, intron 2 of 2)	1938	NM_001172897	857		NM_001753	ENSG00000105974	CAV1	BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21	caveolin 1	protein-coding
201870	chr6	150637051	150637150	+	0	NA	intron (NR_138140, intron 1 of 2)	HAL1ME|LINE|L1	4136	NR_138140	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
166607	chr3	119296201	119297330	+	0	NA	intron (NM_020754, intron 1 of 11)	Charlie15a|DNA|hAT-Charlie	2382	NM_020754	57514		NM_020754	ENSG00000031081	ARHGAP31	AOS|AOS1|CDGAP	Rho GTPase activating protein 31	protein-coding
43053	chr11	74311201	74311800	+	0	NA	exon (NM_182904, exon 1 of 13)	intron (NR_120556, intron 1 of 6)	138	NR_120556	101928580		NR_120556	ENSG00000246211	P4HA3-AS1	-	P4HA3 antisense RNA 1	ncRNA
192096	chr6	16696521	16697050	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	63399	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
24159	chr1	235864001	235864200	+	0	NA	intron (NM_001301365, intron 1 of 52)	MER31A|LTR|ERV1	2806	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
45501	chr11	118652621	118652980	+	0	NA	intron (NM_001144759, intron 19 of 20)	intron (NM_001144759, intron 19 of 20)	8800	NR_106773	102466719		NR_106773	ENSG00000284246	MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
41509	chr11	66256501	66258000	+	0	NA	promoter-TSS (NM_001134776)	promoter-TSS (NM_001134776)	-44	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
183784	chr5	81973321	81973580	+	0	NA	intron (NM_031482, intron 1 of 7)	LTR37B|LTR|ERV1	1427	NM_031482	83734		NM_031482	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
173541	chr4	10078421	10078680	+	0	NA	TTS (NR_036090)	TTS (NR_036090)	142	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
207374	chr7	44111971	44112130	+	0	NA	exon (NM_001129, exon 16 of 21)	exon (NM_001129, exon 16 of 21)	1201	NR_039792	100616346		NR_039792	ENSG00000284412	MIR4649	mir-4649	microRNA 4649	ncRNA
106444	chr18	13630101	13630500	+	0	NA	intron (NM_001378101, intron 5 of 5)	intron (NM_001378101, intron 5 of 5)	-11458	NM_001276251	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
53015	chr12	57530321	57530580	+	0	NA	TTS (NM_052897)	TTS (NM_052897)	7626	NM_052897	114785		NM_052897	ENSG00000166987	MBD6	-	methyl-CpG binding domain protein 6	protein-coding
114482	chr19	12749771	12750630	+	0	NA	Intergenic	Intergenic	-1591	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
9832	chr1	54069901	54070650	+	0	NA	intron (NM_153035, intron 3 of 4)	intron (NM_153035, intron 3 of 4)	16196	NR_039942	100616315		NR_039942	ENSG00000283749	MIR4781	mir-4781	microRNA 4781	ncRNA
156240	chr22	40394451	40395030	+	0	NA	intron (NM_001350047, intron 1 of 20)	L2a|LINE|L2	24146	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
166957	chr3	125351221	125351480	+	0	NA	intron (NM_001348427, intron 1 of 9)	AluJr|SINE|Alu	5930	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
155621	chr22	38867051	38867350	+	0	NA	exon (NM_014292, exon 5 of 5)	exon (NM_014292, exon 5 of 5)	5016	NM_001303494	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
10808	chr1	77777951	77778250	+	0	NA	Intergenic	AluJr|SINE|Alu	-1524	NM_001270384	374986		NM_198549	ENSG00000180488	MIGA1	FAM73A	mitoguardin 1	protein-coding
66340	chr14	61440251	61440430	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	118897	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
153584	chr22	26691001	26691430	+	0	NA	intron (NR_110543, intron 1 of 5)	LTR33|LTR|ERVL	18372	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
37213	chr11	14358501	14359750	+	0	NA	promoter-TSS (NM_012250)	promoter-TSS (NM_012250)	58	NM_012250	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
28146	chr10	43447521	43447980	+	0	NA	intron (NM_001355444, intron 1 of 3)	L1MEc|LINE|L1	10639	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
189327	chr5	172163721	172164430	+	0	NA	intron (NM_005990, intron 1 of 18)	AluSq2|SINE|Alu	24149	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
218526	chr8	53842651	53843650	+	0	NA	promoter-TSS (NM_015941)	promoter-TSS (NM_015941)	95	NM_015941	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
77375	chr15	82834601	82834800	+	0	NA	3' UTR (NM_001080435, exon 10 of 10)	3' UTR (NM_001080435, exon 10 of 10)	25072	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
181278	chr5	39280971	39281330	+	0	NA	Intergenic	L1PA5|LINE|L1	-10501	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
96129	chr17	39655971	39656130	+	0	NA	intron (NM_001165938, intron 2 of 13)	intron (NM_001165938, intron 2 of 13)	-9299	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
125119	chr2	9786901	9787500	+	0	NA	Intergenic	Intergenic	-56242	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
36416	chr11	4098251	4098350	+	0	NA	intron (NM_001033, intron 1 of 18)	(TTCC)n|Simple_repeat|Simple_repeat	3501	NM_001033	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
25518	chr10	7281501	7281700	+	0	NA	intron (NM_001029880, intron 6 of 20)	intron (NM_001029880, intron 6 of 20)	-94816	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
149771	chr21	34810821	34811080	+	0	NA	intron (NM_001754, intron 7 of 8)	intron (NM_001754, intron 7 of 8)	65125	NR_038886	100506385		NR_038885	ENSG00000234380	LINC01426	lincRNA-uc002yug.2	long intergenic non-protein coding RNA 1426	ncRNA
44367	chr11	102467951	102468400	+	0	NA	intron (NR_135076, intron 1 of 2)	MIRc|SINE|MIR	920	NR_135076	102723838		NR_135076	ENSG00000255482	LOC102723838	-	uncharacterized LOC102723838	ncRNA
76226	chr15	73930951	73931450	+	0	NA	intron (NM_005576, intron 1 of 6)	intron (NM_005576, intron 1 of 6)	-2952	NR_040068	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
77423	chr15	84049471	84049630	+	0	NA	Intergenic	Intergenic	-30637	NR_036652	648809		NR_036652		EFL1P1	EFTUD1P1|FAM42B|HsT19321	elongation factor like GTPase 1 pseudogene 1	pseudo
189243	chr5	171986301	171986580	+	0	NA	intron (NM_012300, intron 1 of 12)	intron (NM_012300, intron 1 of 12)	20198	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
34732	chr10	133677551	133677730	+	0	NA	Intergenic	CpG	-50845	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
51607	chr12	52870021	52870980	+	0	NA	Intergenic	Intergenic	-21506	NM_173352	196374		NM_173352	ENSG00000170423	KRT78	CK-78|K5B|K78|Kb40	keratin 78	protein-coding
192068	chr6	16635851	16636150	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	124184	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
542	chr1	1238751	1238850	+	0	NA	Intergenic	Intergenic	6563	NM_080605	126792		NM_080605	ENSG00000176022	B3GALT6	ALGAZ|EDSP2|EDSSPD2|SEMDJL1|beta3GalT6	beta-1,3-galactosyltransferase 6	protein-coding
156573	chr22	41474701	41474900	+	0	NA	intron (NM_001098, intron 1 of 17)	AluY|SINE|Alu	5683	NM_001098	50		NM_001098	ENSG00000100412	ACO2	ACONM|HEL-S-284|ICRD|OCA8|OPA9	aconitase 2	protein-coding
159770	chr3	16302871	16303630	+	0	NA	intron (NM_001352980, intron 9 of 9)	intron (NM_001352980, intron 9 of 9)	38038	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
87806	chr16	75550101	75550500	+	0	NA	intron (NR_074083, intron 2 of 6)	LTR50|LTR|ERVL	5952	NM_001077418	79583		NM_001077416	ENSG00000205084	TMEM231	ALYE870|JBTS20|MKS11|PRO1886	transmembrane protein 231	protein-coding
25382	chr10	6489471	6489830	+	0	NA	intron (NM_001282644, intron 8 of 17)	intron (NM_001282644, intron 8 of 17)	90626	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
32010	chr10	100994571	100994730	+	0	NA	TTS (NM_001163814)	TTS (NM_001163814)	-2421	NM_032429	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
115756	chr19	16322721	16323130	+	0	NA	Intergenic	Intergenic	-1901	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
176004	chr4	82201921	82202280	+	0	NA	Intergenic	L1MA3|LINE|L1	171891	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
221433	chr8	123865401	123865600	+	0	NA	intron (NM_001039112, intron 1 of 40)	L1PA2|LINE|L1	13513	NM_001039112	654463		NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1 like family member 6	protein-coding
98142	chr17	46021621	46021880	+	0	NA	intron (NR_165166, intron 9 of 9)	intron (NR_165166, intron 9 of 9)	22500	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
49275	chr12	19616251	19616550	+	0	NA	Intergenic	Intergenic	175801	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
165289	chr3	78712951	78713250	+	0	NA	intron (NM_133631, intron 6 of 28)	intron (NM_133631, intron 6 of 28)	306359	NM_133631	6091		NM_002941	ENSG00000169855	ROBO1	CPHD8|DUTT1|NORS|NYS8|SAX3	roundabout guidance receptor 1	protein-coding
237273	chrX	111052501	111052700	+	0	NA	intron (NM_001128166, intron 2 of 15)	MIR|SINE|MIR	-43591	NM_002578	5063		NM_002578	ENSG00000077264	PAK3	ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|XLID30|bPAK|beta-PAK	p21 (RAC1) activated kinase 3	protein-coding
136427	chr2	176490901	176491610	+	0	NA	Intergenic	Intergenic	109797	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
82038	chr16	12124751	12125050	+	0	NA	intron (NM_032167, intron 11 of 20)	intron (NM_032167, intron 11 of 20)	148166	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
217221	chr8	26467451	26467580	+	0	NA	Intergenic	MER74A|LTR|ERVL	46357	NM_007257	10687		NM_007257	ENSG00000240694	PNMA2	MA2|MM2|RGAG2	PNMA family member 2	protein-coding
206429	chr7	32708351	32708450	+	0	NA	intron (NR_036680, intron 2 of 16)	L1PA3|LINE|L1	10768	NR_036680	100129460		NR_036680		DPY19L1P1	-	DPY19L1 pseudogene 1	pseudo
100771	chr17	63992601	63992900	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-5601	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
176331	chr4	88132121	88132200	+	0	NA	intron (NM_001348989, intron 3 of 15)	intron (NM_001348989, intron 3 of 15)	26479	NM_004827	9429		NM_004827	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|CDw388|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1	ATP binding cassette subfamily G member 2 (JR blood group)	protein-coding
213400	chr7	136406271	136406430	+	0	NA	Intergenic	Intergenic	-428991	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
130258	chr2	84858051	84858380	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	22869	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
108245	chr18	63218301	63219000	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	101119	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
92819	chr17	16029601	16030000	+	0	NA	TTS (NM_001271420)	TTS (NM_001271420)	29976	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
62698	chr13	102799911	102801100	+	0	NA	intron (NM_001159596, intron 1 of 8)	CpG	1386	NM_017693	54841		NM_017693	ENSG00000134897	BIVM	-	basic, immunoglobulin-like variable motif containing	protein-coding
44678	chr11	110565551	110566250	+	0	NA	Intergenic	Intergenic	135952	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
65756	chr14	53956601	53956880	+	0	NA	promoter-TSS (NM_001202)	promoter-TSS (NM_001202)	85	NM_001202	652		NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
195333	chr6	36618171	36618900	+	0	NA	Intergenic	Intergenic	3977	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
63362	chr13	114041101	114041300	+	0	NA	intron (NM_001320822, intron 3 of 23).2	intron (NM_001320822, intron 3 of 23).2	36755	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
57418	chr12	121840771	121840930	+	0	NA	intron (NM_002150, intron 12 of 13)	AluSx1|SINE|Alu	18009	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
180966	chr5	35758421	35758680	+	0	NA	intron (NM_024867, intron 24 of 36)	intron (NM_024867, intron 24 of 36)	-98341	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
229422	chr9	121322251	121322650	+	0	NA	intron (NM_001353056, intron 12 of 18)	L1MC5a|LINE|L1	22619	NM_000177	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
95386	chr17	35894401	35894800	+	0	NA	Intergenic	MER21A|LTR|ERVL	-14240	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
154915	chr22	37198001	37198900	+	0	NA	intron (NM_001365878, intron 1 of 4)	intron (NM_001365878, intron 1 of 4)	973	NM_001365878	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
114995	chr19	14050771	14051250	+	0	NA	intron (NM_004843, intron 11 of 13)	AluJo|SINE|Alu	6628	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
158055	chr22	49948751	49949800	+	0	NA	Intergenic	Intergenic	-11497	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
176837	chr4	102575601	102576000	+	0	NA	intron (NM_001382625, intron 7 of 24)	L2a|LINE|L2	-73314	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
99079	chr17	48970171	48970330	+	0	NA	Intergenic	Intergenic	-1654	NM_004123	2695		NM_004123	ENSG00000159224	GIP	-	gastric inhibitory polypeptide	protein-coding
1185	chr1	2236101	2236300	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	7881	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
41421	chr11	66055721	66055980	+	0	NA	intron (NM_006842, intron 5 of 21)	MER58C|DNA|hAT-Charlie	2706	NR_145738	109616986		NR_145738		SNORD13F	-	small nucleolar RNA, C/D box 13F	snoRNA
45429	chr11	118402951	118403250	+	0	NA	intron (NM_006476, intron 1 of 2)	intron (NM_006476, intron 1 of 2)	1494	NM_006476	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
151132	chr21	44894671	44895450	+	0	NA	exon (NM_001303238, exon 9 of 16)	exon (NM_001303238, exon 9 of 16)	-21157	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
49755	chr12	31742821	31743180	+	0	NA	Intergenic	Intergenic	-13826	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
65083	chr14	39431401	39433500	+	0	NA	promoter-TSS (NM_203301)	promoter-TSS (NM_203301)	50	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
75287	chr15	65130101	65130300	+	0	NA	intron (NM_005707, intron 1 of 4)	AluSx1|SINE|Alu	3608	NM_005707	10081		NM_005707	ENSG00000090470	PDCD7	59K|ES18|HES18	programmed cell death 7	protein-coding
174693	chr4	42396771	42397650	+	0	NA	promoter-TSS (NM_001080505)	promoter-TSS (NM_001080505)	-278	NM_001080505	152573		NM_001080505	ENSG00000178343	SHISA3	hShisa3	shisa family member 3	protein-coding
42932	chr11	73404071	73404680	+	0	NA	3' UTR (NM_001286051, exon 6 of 6)	3' UTR (NM_001286051, exon 6 of 6)	27707	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
187911	chr5	148842751	148843430	+	0	NA	Intergenic	AluYc|SINE|Alu	16479	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
217843	chr8	37734871	37735130	+	0	NA	non-coding (NR_125821, exon 2 of 2)	non-coding (NR_125821, exon 2 of 2)	-1634	NM_001362880	11160		NM_007175	ENSG00000147475	ERLIN2	C8orf2|Erlin-2|NET32|SPFH2|SPG18|SPG18A|SPG18B	ER lipid raft associated 2	protein-coding
32641	chr10	103704351	103704450	+	0	NA	intron (NM_014631, intron 5 of 13)	MIR3|SINE|MIR	-26185	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
159123	chr3	12625451	12626550	+	0	NA	intron (NR_148942, intron 1 of 16)	AluSq2|SINE|Alu	37508	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
88704	chr16	85880201	85880400	+	0	NA	Intergenic	Intergenic	-18862	NM_002163	3394		NM_002163	ENSG00000140968	IRF8	H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8	interferon regulatory factor 8	protein-coding
226165	chr9	63861351	63861700	+	0	NA	Intergenic	Intergenic	-1891	NR_033907	642236		NR_033907		FRG1JP	-	FSHD region gene 1 family member J, pseudogene	pseudo
7678	chr1	35787601	35787800	+	0	NA	Intergenic	HAL1|LINE|L1	-17722	NM_001330490	63967		NM_022111	ENSG00000092853	CLSPN	-	claspin	protein-coding
14743	chr1	145995271	145995430	+	0	NA	intron (NM_001313972, intron 1 of 6)	intron (NM_001313972, intron 1 of 6)	394	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
19356	chr1	173855701	173856630	+	0	NA	intron (NM_018122, intron 15 of 16)	MER5B|DNA|hAT-Charlie	-7083	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
5611	chr1	26123301	26123700	+	0	NA	3' UTR (NM_001243533, exon 4 of 4)	3' UTR (NM_001243533, exon 4 of 4)	11676	NM_152835	149420		NM_152835	ENSG00000175087	PDIK1L	CLIK1L|STK35L2	PDLIM1 interacting kinase 1 like	protein-coding
16378	chr1	154387851	154388150	+	0	NA	Intergenic	AluSp|SINE|Alu	-17343	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
64249	chr14	23161251	23161550	+	0	NA	intron (NM_012244, intron 3 of 10)	intron (NM_012244, intron 3 of 10)	-5942	NM_001267036	23428		NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
9809	chr1	53836901	53837500	+	0	NA	intron (NM_018087, intron 1 of 17)	AluJb|SINE|Alu	1096	NM_018087	55706		NM_018087	ENSG00000058804	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
234777	chrX	23907421	23908650	+	0	NA	promoter-TSS (NM_001169574)	promoter-TSS (NM_001169574)	29	NM_001169574	254158		NM_152761	ENSG00000165182	CXorf58	-	chromosome X open reading frame 58	protein-coding
79183	chr16	315101	315500	+	0	NA	intron (NM_181050, intron 2 of 9)	L1M5|LINE|L1	32136	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
57850	chr12	123268021	123268680	+	0	NA	promoter-TSS (NM_001270434)	promoter-TSS (NM_001270434)	-96	NM_001270434	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
104779	chr17	81716551	81716650	+	0	NA	intron (NM_012140, intron 5 of 10)	intron (NM_012140, intron 5 of 10)	4316	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
223041	chr8	143366651	143367630	+	0	NA	non-coding (NR_026785, exon 1 of 1)	non-coding (NR_026785, exon 1 of 1)	1495	NR_026785	78998		NM_024035	ENSG00000254389	RHPN1-AS1	C8orf51	RHPN1 antisense RNA 1 (head to head)	ncRNA
65276	chr14	50001101	50002800	+	0	NA	non-coding (NR_126500, exon 3 of 3)	non-coding (NR_126500, exon 3 of 3)	4569	NR_126496	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
59713	chr13	29758451	29759150	+	0	NA	Intergenic	L2|LINE|L2	91817	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
163428	chr3	50573001	50573150	+	0	NA	intron (NM_001377426, intron 4 of 10)	intron (NM_001377426, intron 4 of 10)	-2048	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
192172	chr6	17650521	17650980	+	0	NA	intron (NM_005124, intron 11 of 21)	L1ME2z|LINE|L1	50448	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
125060	chr2	9622051	9622430	+	0	NA	intron (NM_006826, intron 2 of 5)	L1ME2z|LINE|L1	8757	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
5282	chr1	25099101	25099900	+	0	NA	Intergenic	Intergenic	75997	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
16667	chr1	155180851	155181830	+	0	NA	TTS (NR_104150)	TTS (NR_104150)	6586	NM_001256601	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
174794	chr4	48047221	48048080	+	0	NA	Intergenic	Intergenic	30878	NM_207330	152519		NM_207330	ENSG00000163293	NIPAL1	NIPA3|NPAL1|SLC57A3	NIPA like domain containing 1	protein-coding
111020	chr19	3057901	3058300	+	0	NA	intron (NM_198969, intron 2 of 6)	intron (NM_198969, intron 2 of 6)	4395	NM_001130	166		NM_001130	ENSG00000104964	TLE5	AES|AES-1|AES-2|ESP1|GRG|GRG5|Grg-5	TLE family member 5, transcriptional modulator	protein-coding
201521	chr6	149095901	149096550	+	0	NA	Intergenic	Intergenic	-63564	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
79728	chr16	1327021	1327730	+	0	NA	TTS (NM_003345)	TTS (NM_003345)	-6270	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
189821	chr5	177007901	177008200	+	0	NA	Intergenic	AluSz|SINE|Alu	-1256	NM_001199297	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
23063	chr1	226632751	226633200	+	0	NA	3' UTR (NM_002221, exon 8 of 8)	3' UTR (NM_002221, exon 8 of 8)	42093	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
118574	chr19	36272201	36273100	+	0	NA	Intergenic	Intergenic	-26722	NM_001366188	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
235651	chrX	48526571	48526730	+	0	NA	intron (NM_006579, intron 2 of 4)	intron (NM_006579, intron 2 of 4)	4842	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
39870	chr11	62450901	62451100	+	0	NA	intron (NM_024060, intron 5 of 5)	FLAM_C|SINE|Alu	31967	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
224927	chr9	32968351	32968900	+	0	NA	Intergenic	Intergenic	32951	NM_001195249	54840		NM_017692	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
27974	chr10	42753021	42753550	+	0	NA	non-coding (NR_136644, exon 1 of 1)	non-coding (NR_136644, exon 1 of 1)	-1857	NR_134498	105378269		NR_134498		LOC105378269	-	uncharacterized LOC105378269	ncRNA
44169	chr11	96222371	96222530	+	0	NA	intron (NM_032427, intron 1 of 4)	Zaphod|DNA|hAT-Tip100	-118988	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
160894	chr3	33797951	33799200	+	0	NA	promoter-TSS (NM_001162429)	promoter-TSS (NM_001162429)	4	NM_001162429	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
80672	chr16	3025501	3025700	+	0	NA	intron (NM_001347703, intron 2 of 13)	intron (NM_001347703, intron 2 of 13)	-1314	NM_001002018	54985		NM_017885	ENSG00000103145	HCFC1R1	HPIP	host cell factor C1 regulator 1	protein-coding
167088	chr3	127483951	127484480	+	0	NA	Intergenic	Intergenic	53565	NR_125397	101927149		NR_125397	ENSG00000239921	LINC01471	-	long intergenic non-protein coding RNA 1471	ncRNA
180612	chr5	16492321	16492580	+	0	NA	intron (NM_001034850, intron 3 of 8)	intron (NM_001034850, intron 3 of 8)	16548	NM_019000	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
145402	chr20	41616401	41616600	+	0	NA	intron (NM_032221, intron 1 of 36)	intron (NM_032221, intron 1 of 36)	1877	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
173325	chr4	7634751	7635050	+	0	NA	intron (NM_020777, intron 3 of 26)	L1MC3|LINE|L1	-119190	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
34474	chr10	132460751	132461200	+	0	NA	Intergenic	Intergenic	15786	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
214145	chr7	144356851	144358130	+	0	NA	intron (NM_005435, intron 1 of 14)	intron (NM_005435, intron 1 of 14)	-1772	NR_126023	101928492		NR_126023		OR2A1-AS1	-	OR2A1 antisense RNA 1	ncRNA
40710	chr11	64791851	64792700	+	0	NA	exon (NM_001307990, exon 26 of 32)	exon (NM_001307990, exon 26 of 32)	10939	NM_004579	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
235901	chrX	52995021	52996060	+	0	NA	promoter-TSS (NM_014138)	promoter-TSS (NM_014138)	-68	NM_001242492	29057		NM_014138	ENSG00000268350	FAM156A	PRO0659|TMEM29	family with sequence similarity 156 member A	protein-coding
176496	chr4	93643651	93643900	+	0	NA	intron (NM_001286838, intron 13 of 14)	L1HS|LINE|L1	-184978	NM_005172	474		NM_005172	ENSG00000172238	ATOH1	ATH1|DFNA89|HATH1|MATH-1|bHLHa14	atonal bHLH transcription factor 1	protein-coding
183298	chr5	76571621	76572080	+	0	NA	intron (NM_006633, intron 4 of 35)	L1MD2|LINE|L1	24441	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
96327	chr17	40021621	40021880	+	0	NA	intron (NM_014815, intron 23 of 25)	intron (NM_014815, intron 23 of 25)	4659	NR_106944	102466757		NR_106944	ENSG00000283721	MIR6884	hsa-mir-6884	microRNA 6884	ncRNA
97530	chr17	44006301	44007900	+	0	NA	intron (NM_153006, intron 4 of 6)	CpG-11225	2478	NM_153006	162417		NM_153006	ENSG00000161653	NAGS	AGAS|ARGA	N-acetylglutamate synthase	protein-coding
146823	chr20	51399971	51400980	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	52502	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
67874	chr14	74260801	74261900	+	0	NA	3' UTR (NM_182894, exon 5 of 5)	3' UTR (NM_182894, exon 5 of 5)	21901	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
52701	chr12	56523551	56523650	+	0	NA	intron (NM_002898, intron 1 of 13)	AluSz|SINE|Alu	1780	NM_002898	5939		NM_002898	ENSG00000076067	RBMS2	SCR3	RNA binding motif single stranded interacting protein 2	protein-coding
35802	chr11	2202771	2203200	+	0	NA	Intergenic	Intergenic	29922	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
127593	chr2	42813021	42813650	+	0	NA	Intergenic	Intergenic	-20752	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
38996	chr11	47644421	47644680	+	0	NA	Intergenic	AluJb|SINE|Alu	-1896	NM_001317232	23788		NM_014342	ENSG00000109919	MTCH2	HSPC032|MIMP|SLC25A50	mitochondrial carrier 2	protein-coding
197238	chr6	69792071	69792630	+	0	NA	intron (NM_018368, intron 1 of 15)	L1ME1|LINE|L1	4116	NM_001363722	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
106050	chr18	9017151	9017650	+	0	NA	Intergenic	Intergenic	-85299	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
226504	chr9	71785051	71785150	+	0	NA	Intergenic	L1PA8|LINE|L1	-16587	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
133958	chr2	130590351	130590450	+	0	NA	Intergenic	Intergenic	9175	NM_001270421	55997		NM_032545	ENSG00000136698	CFC1	CFC1B|CRYPTIC|DTGA2|HTX2	cryptic, EGF-CFC family member 1	protein-coding
216551	chr8	21898451	21898750	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	15090	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
145174	chr20	38862001	38862250	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	56428	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
6500	chr1	28507201	28507980	+	0	NA	promoter-TSS (NR_004404)	promoter-TSS (NR_004404)	225	NR_002907	6080		NR_002907	ENSG00000274266	SNORA73A	E1|E1-7|E1b|RNE1|RNU17A|U17A	small nucleolar RNA, H/ACA box 73A	snoRNA
147967	chr20	62977451	62978600	+	0	NA	Intergenic	Intergenic	25316	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
13385	chr1	113935821	113936530	+	0	NA	intron (NM_001369806, intron 1 of 15)	intron (NM_001369806, intron 1 of 15)	6331	NM_001369807	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
86969	chr16	68146521	68147400	+	0	NA	intron (NM_173165, intron 3 of 9)	intron (NM_173165, intron 3 of 9)	61590	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
9	chr1	20721	21580	+	0	NA	intron (NR_024540, intron 2 of 10)	intron (NR_024540, intron 2 of 10)	-3714	NR_107063	102465910		NR_107063	ENSG00000275449	MIR6859-3	hsa-mir-6859-3	microRNA 6859-3	ncRNA
24357	chr1	240666601	240667080	+	0	NA	Intergenic	Intergenic	-54685	NM_022469	64388		NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC|STHAG9	gremlin 2, DAN family BMP antagonist	protein-coding
116262	chr19	17624721	17625180	+	0	NA	exon (NM_001080421, exon 34 of 42)	exon (NM_001080421, exon 34 of 42)	63249	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
92443	chr17	8466901	8467350	+	0	NA	3' UTR (NM_001330129, exon 8 of 8)	3' UTR (NM_001330129, exon 8 of 8)	31241	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
43786	chr11	86282671	86283030	+	0	NA	Intergenic	Intergenic	4517	NR_106813	102465452		NR_106813	ENSG00000283744	MIR6755	hsa-mir-6755	microRNA 6755	ncRNA
23609	chr1	230133101	230133530	+	0	NA	intron (NM_004481, intron 1 of 15)	L1M5|LINE|L1	66077	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
47584	chr12	4758171	4758350	+	0	NA	intron (NM_017417, intron 6 of 10)	intron (NM_017417, intron 6 of 10)	37860	NM_017417	26290		NM_017417	ENSG00000130035	GALNT8	GALNAC-T8	polypeptide N-acetylgalactosaminyltransferase 8	protein-coding
203890	chr7	1484801	1485230	+	0	NA	intron (NM_001080453, intron 24 of 47)	intron (NM_001080453, intron 24 of 47)	19374	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
107326	chr18	45664871	45665480	+	0	NA	intron (NM_001242692, intron 12 of 20)	intron (NM_001242692, intron 12 of 20)	49699	NM_007163	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
76703	chr15	75817301	75817600	+	0	NA	Intergenic	L1MB3|LINE|L1	-25997	NM_001284382	92912		NM_173469	ENSG00000140367	UBE2Q2	-	ubiquitin conjugating enzyme E2 Q2	protein-coding
133608	chr2	126359651	126359750	+	0	NA	Intergenic	MIRb|SINE|MIR	-241715	NR_146970	105373600		NR_146970	ENSG00000226813	LINC01941	-	long intergenic non-protein coding RNA 1941	ncRNA
176468	chr4	89336921	89337180	+	0	NA	Intergenic	Intergenic	-29250	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
235378	chrX	44945851	44946150	+	0	NA	intron (NM_001291416, intron 2 of 28)	intron (NM_001291416, intron 2 of 28)	72812	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
183266	chr5	76451071	76451450	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	47975	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
81175	chr16	4463101	4463300	+	0	NA	intron (NM_001351996, intron 4 of 4)	intron (NM_001351996, intron 4 of 4)	11425	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
153036	chr22	23255771	23256130	+	0	NA	intron (NM_021574, intron 2 of 21)	intron (NM_021574, intron 2 of 21)	-6817	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
27627	chr10	32944251	32944750	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	-8942	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
7910	chr1	37476801	37478090	+	0	NA	intron (NM_001323550, intron 2 of 5)	intron (NM_001323550, intron 2 of 5)	-2785	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
129106	chr2	65127671	65128030	+	0	NA	intron (NM_004161, intron 1 of 5)	AluY|SINE|Alu	2256	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
1451	chr1	2655671	2656480	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-23059	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
124242	chr19	57410921	57412000	+	0	NA	intron (NM_006959, intron 1 of 2)	CpG	299	NM_001330617	7565		NM_006959	ENSG00000186272	ZNF17	HPF3|KOX10	zinc finger protein 17	protein-coding
229600	chr9	123637701	123638580	+	0	NA	intron (NR_148208, intron 9 of 20)	intron (NR_148208, intron 9 of 20)	-152518	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
232740	chr9	136647171	136647330	+	0	NA	Intergenic	Intergenic	-11606	NR_046367	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
186120	chr5	134142721	134143280	+	0	NA	exon (NM_003202, exon 8 of 10)	exon (NM_003202, exon 8 of 10)	19382	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
19405	chr1	174165401	174166100	+	0	NA	intron (NM_001366447, intron 1 of 20)	AluJo|SINE|Alu	6230	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
5954	chr1	26895501	26895900	+	0	NA	intron (NM_022078, intron 2 of 6)	AluSx1|SINE|Alu	4767	NM_022078	63906		NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
87281	chr16	70024251	70025050	+	0	NA	non-coding (NR_003610, exon 9 of 26)	non-coding (NR_003610, exon 9 of 26)	-5696	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
19891	chr1	183655321	183655800	+	0	NA	intron (NM_015149, intron 1 of 18)	intron (NM_015149, intron 1 of 18)	-2244	NM_203454	403314		NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4	protein-coding
68256	chr14	77025621	77026130	+	0	NA	exon (NM_024496, exon 1 of 1)	exon (NM_024496, exon 1 of 1)	2833	NM_024496	64207		NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1|NEDAMSS	interferon regulatory factor 2 binding protein like	protein-coding
58319	chr12	131104671	131105050	+	0	NA	exon (NM_198827, exon 16 of 25)	exon (NM_198827, exon 16 of 25)	-60151	NR_026670	116437		NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
119987	chr19	41910181	41911360	+	0	NA	intron (NM_001365103, intron 2 of 5)	intron (NM_001365103, intron 2 of 5)	17679	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
198818	chr6	109064621	109064880	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	30096	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
192404	chr6	24841001	24841200	+	0	NA	intron (NM_001286447, intron 13 of 13)	intron (NM_001286447, intron 13 of 13)	36170	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
74772	chr15	63246471	63246630	+	0	NA	intron (NM_016530, intron 2 of 7)	MER21B|LTR|ERVL	-31000	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
229950	chr9	126681901	126682280	+	0	NA	intron (NM_001174147, intron 2 of 7)	(T)n|Simple_repeat|Simple_repeat	68162	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
213622	chr7	139584001	139584400	+	0	NA	intron (NM_022740, intron 12 of 14)	intron (NM_022740, intron 12 of 14)	60515	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
205155	chr7	7203271	7203430	+	0	NA	intron (NM_020156, intron 1 of 3)	L1MB3|LINE|L1	20806	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
60613	chr13	42140651	42140750	+	0	NA	non-coding (NR_123715, exon 2 of 32)	non-coding (NR_123715, exon 2 of 32)	2642	NR_123714	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
80225	chr16	2184921	2185180	+	0	NA	intron (NM_020764, intron 12 of 19)	intron (NM_020764, intron 12 of 19)	11555	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
191888	chr6	15338571	15338930	+	0	NA	intron (NM_001267040, intron 1 of 17)	HUERS-P2-int|LTR|ERV1	89895	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
37335	chr11	14850801	14851200	+	0	NA	intron (NM_001363569, intron 12 of 15)	AluY|SINE|Alu	40671	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
19198	chr1	172395121	172395380	+	0	NA	intron (NM_001350206, intron 20 of 20)	AluSx|SINE|Alu	-25435	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
166365	chr3	113005001	113006950	+	0	NA	exon (NM_001319115, exon 8 of 8)	exon (NM_001319115, exon 8 of 8)	13696	NM_001319111	25871		NM_015412	ENSG00000163608	NEPRO	ANXD3|C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
150616	chr21	43375751	43376580	+	0	NA	Intergenic	Intergenic	-13816	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
110696	chr19	2288651	2289100	+	0	NA	TTS (NM_001101391)	TTS (NM_001101391)	-6700	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
3307	chr1	15364701	15364980	+	0	NA	intron (NM_052929, intron 22 of 30)	intron (NM_052929, intron 22 of 30)	-20957	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
43318	chr11	76293101	76293300	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-86698	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
210190	chr7	98872171	98872930	+	0	NA	Intergenic	Intergenic	-2536	NM_001134451	222865		NM_152913	ENSG00000166448	TMEM130	-	transmembrane protein 130	protein-coding
145927	chr20	46015151	46015250	+	0	NA	intron (NR_147699, intron 2 of 2)	L2a|LINE|L2	6292	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
70763	chr14	103426621	103426980	+	0	NA	intron (NM_002376, intron 2 of 15)	intron (NM_002376, intron 2 of 15)	41385	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
196759	chr6	45436201	45437180	+	0	NA	intron (NM_001278478, intron 2 of 5)	intron (NM_001278478, intron 2 of 5)	14415	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
166900	chr3	124730221	124731500	+	0	NA	intron (NR_033434, intron 1 of 4)	intron (NR_033434, intron 1 of 4)	408	NM_000373	7372		NM_000373	ENSG00000114491	UMPS	OPRT	uridine monophosphate synthetase	protein-coding
51101	chr12	50040221	50040550	+	0	NA	Intergenic	Intergenic	-14828	NM_001320004	29127		NM_013277	ENSG00000161800	RACGAP1	CDAN3B|CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
55109	chr12	98517721	98518400	+	0	NA	intron (NM_001307975, intron 1 of 7)	AluSq10|SINE|Alu	-1834	NR_027157	100128191		NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
164374	chr3	58214801	58215350	+	0	NA	Intergenic	L2c|LINE|L2	-4072	NM_001256560	1776		NM_004944	ENSG00000163687	DNASE1L3	D3|DHP2|DNAS1L3|LSD|SLEB16	deoxyribonuclease 1L3	protein-coding
63872	chr14	21735351	21735450	+	0	NA	Intergenic	MIRb|SINE|MIR	-64383	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
151513	chr21	46427721	46427980	+	0	NA	intron (NM_006031, intron 34 of 46)	intron (NM_006031, intron 34 of 46)	-31041	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
111593	chr19	4090451	4090550	+	0	NA	3' UTR (NM_030662, exon 11 of 11)	3' UTR (NM_030662, exon 11 of 11)	-23601	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
197149	chr6	59544951	59545450	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1583754	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
76135	chr15	72546521	72546780	+	0	NA	intron (NM_005744, intron 3 of 13)	AluJo|SINE|Alu	-40567	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
224402	chr9	14353401	14353750	+	0	NA	intron (NM_001369468, intron 1 of 8)	intron (NM_001369468, intron 1 of 8)	-31188	NM_001369466	4781		NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
142789	chr20	13247301	13248280	+	0	NA	intron (NM_080826, intron 1 of 5)	intron (NM_080826, intron 1 of 5)	-8103	NR_040043	100505536		NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	ncRNA
128827	chr2	63055071	63056280	+	0	NA	exon (NM_001199770, exon 5 of 5)	exon (NM_001199770, exon 5 of 5)	4845	NM_014562	5013		NM_014562	ENSG00000115507	OTX1	-	orthodenticle homeobox 1	protein-coding
82775	chr16	21442321	21443030	+	0	NA	Intergenic	Intergenic	-8220	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
43582	chr11	83087071	83087230	+	0	NA	Intergenic	Intergenic	15084	NR_038903	100506233		NR_038903		RAB30-DT	RAB30-AS1	RAB30 divergent transcript	ncRNA
166650	chr3	119919421	119919880	+	0	NA	intron (NM_001146156, intron 4 of 10)	intron (NM_001146156, intron 4 of 10)	136940	NM_022002	8856		NM_003889	ENSG00000144852	NR1I2	BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR	nuclear receptor subfamily 1 group I member 2	protein-coding
106834	chr18	24018101	24018750	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-2965	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
105366	chr17	82651001	82651750	+	0	NA	Intergenic	AluJb|SINE|Alu	-2931	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
82614	chr16	18917371	18917530	+	0	NA	intron (NM_015092, intron 1 of 62)	intron (NM_015092, intron 1 of 62)	8958	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
158583	chr3	4720701	4721180	+	0	NA	intron (NM_001168272, intron 39 of 60)	intron (NM_001168272, intron 39 of 60)	30650	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
186218	chr5	134383051	134383600	+	0	NA	intron (NM_003337, intron 4 of 5)	AluSc8|SINE|Alu	11756	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
197092	chr6	56954401	56955650	+	0	NA	promoter-TSS (NM_001144769)	promoter-TSS (NM_001144769)	50	NM_001318539	221336		NM_152731	ENSG00000151917	BEND6	C6orf65	BEN domain containing 6	protein-coding
80909	chr16	3735621	3735880	+	0	NA	intron (NM_004380, intron 28 of 30)	intron (NM_004380, intron 28 of 30)	-18226	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
51808	chr12	53412821	53413350	+	0	NA	3' UTR (NM_003109, exon 6 of 6)	3' UTR (NM_003109, exon 6 of 6)	-10770	NM_001164691	269		NM_020547	ENSG00000135409	AMHR2	AMHR|MISR2|MISRII|MRII	anti-Mullerian hormone receptor type 2	protein-coding
155508	chr22	38683451	38684350	+	0	NA	3' UTR (NM_020243, exon 4 of 4)	3' UTR (NM_020243, exon 4 of 4)	1943	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
173416	chr4	8172271	8172630	+	0	NA	Intergenic	Intergenic	-13637	NM_001130084	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
77890	chr15	89127271	89127600	+	0	NA	intron (NM_152924, intron 3 of 10)	intron (NM_152924, intron 3 of 10)	38979	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
1643	chr1	3789001	3789200	+	0	NA	intron (NM_020710, intron 1 of 6)	intron (NM_020710, intron 1 of 6)	7398	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
27730	chr10	35085951	35086300	+	0	NA	intron (NM_001198777, intron 1 of 20)	AluSx1|SINE|Alu	4216	NM_001324375	8453		NM_003591	ENSG00000108094	CUL2	-	cullin 2	protein-coding
192047	chr6	16494851	16495100	+	0	NA	intron (NM_000332, intron 6 of 8)	intron (NM_000332, intron 6 of 8)	256388	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
190225	chr5	178243271	178243430	+	0	NA	intron (NM_173465, intron 25 of 28)	AluSz|SINE|Alu	-10528	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
64587	chr14	24947121	24947200	+	0	NA	intron (NM_001351941, intron 3 of 6)	intron (NM_001351941, intron 3 of 6)	101840	NM_001304477	29091		NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding
38581	chr11	46123671	46123830	+	0	NA	Intergenic	Intergenic	-2296	NM_001352032	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
184307	chr5	96881321	96882130	+	0	NA	intron (NM_001130140, intron 2 of 18)	MLT1J|LTR|ERVL-MaLR	5225	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
142617	chr20	5602071	5603080	+	0	NA	intron (NM_019593, intron 2 of 19)	intron (NM_019593, intron 2 of 19)	8431	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
136535	chr2	177296101	177296450	+	0	NA	intron (NR_026966, intron 8 of 8)	intron (NR_026966, intron 8 of 8)	17607	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
81416	chr16	8674021	8674830	+	0	NA	promoter-TSS (NM_020686)	promoter-TSS (NM_020686)	-192	NM_020686	18		NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
32349	chr10	102347251	102347350	+	0	NA	intron (NR_165087, intron 4 of 38)	intron (NR_165087, intron 4 of 38)	-46810	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
180809	chr5	32370271	32370430	+	0	NA	intron (NR_144318, intron 16 of 18)	(GA)n|Simple_repeat|Simple_repeat	24125	NR_030305	693164		NR_030305	ENSG00000207956	MIR579	MIRN579|hsa-mir-579	microRNA 579	ncRNA
98218	chr17	46143351	46143650	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSq2|SINE|Alu	49282	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
169554	chr3	170201921	170202000	+	0	NA	Intergenic	AluSc8|SINE|Alu	-20227	NM_024947	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
77865	chr15	88900151	88900900	+	0	NA	intron (NM_001310319, intron 5 of 6)	intron (NM_001310319, intron 5 of 6)	-4981	NM_178232	145864		NM_178232	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
209111	chr7	74932671	74933200	+	0	NA	Intergenic	Intergenic	-17857	NM_001382555	100101268		NM_001382555	ENSG00000184616	SPDYE12	SPDYE12P	speedy/RINGO cell cycle regulator family member E12	protein-coding
234799	chrX	24018601	24018800	+	0	NA	intron (NM_030624, intron 2 of 3)	Charlie1b|DNA|hAT-Charlie	8486	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
104797	chr17	81733751	81734630	+	0	NA	Intergenic	Intergenic	21906	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
75549	chr15	66852621	66852880	+	0	NA	Intergenic	MIRb|SINE|MIR	103765	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
71541	chr14	106221401	106221800	+	0	NA	Intergenic	L1PB4|LINE|L1	-66074	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
181136	chr5	38258701	38259030	+	0	NA	intron (NM_001205301, intron 1 of 22)	CpG	306	NM_001205301	133584		NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
74576	chr15	60548101	60548780	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	44086	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
110940	chr19	2837621	2837880	+	0	NA	Intergenic	AluJb|SINE|Alu	-3725	NM_001172775	148254		NM_152791	ENSG00000186300	ZNF555	-	zinc finger protein 555	protein-coding
218895	chr8	60672371	60672780	+	0	NA	Intergenic	Intergenic	-6165	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
62897	chr13	110819201	110819750	+	0	NA	non-coding (NR_158538, exon 2 of 2)	non-coding (NR_158538, exon 2 of 2)	5770	NR_158538	105370362		NR_158538		LOC105370362	-	uncharacterized LOC105370362	ncRNA
44877	chr11	114262621	114262930	+	0	NA	intron (NR_164073, intron 1 of 3)	intron (NR_164073, intron 1 of 3)	2007	NR_164073	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
84009	chr16	29459651	29460150	+	0	NA	promoter-TSS (NM_177552)	promoter-TSS (NM_177552)	-13	NM_177552	6818		NM_003166	ENSG00000261052	SULT1A3	HAST|HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|ST1A5|STM|TL-PST	sulfotransferase family 1A member 3	protein-coding
84663	chr16	30746371	30746750	+	0	NA	Intergenic	AluSg|SINE|Alu	-1739	NM_001172432	5261		NM_000294	ENSG00000156873	PHKG2	GSD9C	phosphorylase kinase catalytic subunit gamma 2	protein-coding
83813	chr16	28834101	28834680	+	0	NA	exon (NM_007245, exon 17 of 22)	exon (NM_007245, exon 17 of 22)	9617	NR_039872	100616256		NR_039872	ENSG00000283845	MIR4721	-	microRNA 4721	ncRNA
188684	chr5	157278401	157278850	+	0	NA	intron (NM_014376, intron 1 of 30)	MIRc|SINE|MIR	9301	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
175933	chr4	80393521	80393780	+	0	NA	intron (NM_001206997, intron 2 of 6)	Tigger3b|DNA|TcMar-Tigger	57920	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
123480	chr19	54178501	54179230	+	0	NA	exon (NM_001146083, exon 6 of 7).6	exon (NM_001146083, exon 6 of 7).6	-5705	NM_144686	147798		NM_144686	ENSG00000167608	TMC4	-	transmembrane channel like 4	protein-coding
221843	chr8	128240101	128240770	+	0	NA	Intergenic	Intergenic	90319	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
192229	chr6	18324171	18324430	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-59770	NM_001134709	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
115635	chr19	16103421	16103980	+	0	NA	TTS (NM_001145160)	TTS (NM_001145160)	-8189	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
58611	chr12	132486201	132486800	+	0	NA	Intergenic	Intergenic	-3651	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
2241	chr1	8874671	8874830	+	0	NA	intron (NM_001428, intron 2 of 11)	intron (NM_001428, intron 2 of 11)	3936	NM_001353346	2023		NM_001428	ENSG00000074800	ENO1	ENO1-IT1|ENO1L1|HEL-S-17|MPB1|NNE|PPH	enolase 1	protein-coding
229878	chr9	126498001	126498280	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-87636	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
22997	chr1	226119601	226120000	+	0	NA	Intergenic	Intergenic	-28203	NR_146443	107985353		NR_146443	ENSG00000234478	ACBD3-AS1	-	ACBD3 antisense RNA 1	ncRNA
182805	chr5	68891671	68892030	+	0	NA	Intergenic	L1MB2|LINE|L1	138077	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
194070	chr6	31869151	31869750	+	0	NA	intron (NM_001178045, intron 12 of 20).5	MER91A|DNA|hAT-Tip100	-6629	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
109785	chr19	1144901	1145100	+	0	NA	intron (NM_014963, intron 4 of 31)	(GAGACA)n|Simple_repeat|Simple_repeat	-12779	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
181614	chr5	43661271	43661500	+	0	NA	intron (NM_182977, intron 17 of 21)	intron (NM_182977, intron 17 of 21)	-58155	NR_073113	100652772		NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
29481	chr10	70570071	70570230	+	0	NA	Intergenic	AluSx1|SINE|Alu	32591	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
66019	chr14	58268271	58268430	+	0	NA	intron (NR_038123, intron 7 of 9)	intron (NR_038123, intron 7 of 9)	-19683	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
33206	chr10	113882201	113882550	+	0	NA	intron (NM_198514, intron 4 of 10)	L1MB8|LINE|L1	27714	NM_198514	374354		NM_198514	ENSG00000196865	NHLRC2	FINCA	NHL repeat containing 2	protein-coding
161892	chr3	45950401	45951830	+	0	NA	intron (NM_024513, intron 14 of 17)	intron (NM_024513, intron 14 of 17)	7651	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
196931	chr6	52415371	52415730	+	0	NA	Intergenic	Intergenic	-4792	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
93976	chr17	21968951	21969480	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-233780	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
213457	chr7	138882871	138883030	+	0	NA	intron (NM_001164665, intron 10 of 19)	intron (NM_001164665, intron 10 of 19)	-84754	NM_020632	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
237718	chrX	125203451	125203550	+	0	NA	Intergenic	CpG	-116371	NM_001195272	100129520		NM_001195272	ENSG00000282815	TEX13C	-	TEX13 family member C	protein-coding
224174	chr9	5303651	5304880	+	0	NA	promoter-TSS (NM_001329191)	promoter-TSS (NM_001329191)	-37	NM_001329191	6019		NM_005059	ENSG00000107014	RLN2	H2|H2-RLX|RLXH2|bA12D24.1.1|bA12D24.1.2	relaxin 2	protein-coding
110668	chr19	2256151	2256750	+	0	NA	promoter-TSS (NM_144616)	promoter-TSS (NM_144616)	-33	NM_144616	126306		NM_144616	ENSG00000167476	JSRP1	JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding
107688	chr18	49447651	49448100	+	0	NA	intron (NM_001374431, intron 1 of 16)	HUERS-P3b-int|LTR|ERV1	12770	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
8524	chr1	40998101	40998500	+	0	NA	intron (NR_125440, intron 9 of 17)	AluSc8|SINE|Alu	9781	NM_001301237	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
185708	chr5	132013451	132013830	+	0	NA	Intergenic	Intergenic	-1572	NM_001205250	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
182661	chr5	67209201	67209880	+	0	NA	Intergenic	Intergenic	-12741	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
183032	chr5	73219301	73219530	+	0	NA	Intergenic	AluSz|SINE|Alu	-17454	NR_134291	340090		NR_134291	ENSG00000287090	LOC340090	-	uncharacterized LOC340090	ncRNA
150134	chr21	37675201	37675500	+	0	NA	intron (NM_002240, intron 3 of 3)	CpG	241107	NM_002240	3763		NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2	potassium inwardly rectifying channel subfamily J member 6	protein-coding
188783	chr5	157761951	157762300	+	0	NA	Intergenic	Intergenic	18413	NM_173491	134353		NM_173491	ENSG00000155858	LSM11	AGS8	LSM11, U7 small nuclear RNA associated	protein-coding
39025	chr11	47756621	47756880	+	0	NA	intron (NM_015308, intron 2 of 16)	L1PA6|LINE|L1	10591	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
153262	chr22	24132921	24133600	+	0	NA	intron (NM_012295, intron 28 of 36)	intron (NM_012295, intron 28 of 36)	-48227	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
127020	chr2	36968351	36968450	+	0	NA	Intergenic	Intergenic	-1864	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
107415	chr18	46181321	46181580	+	0	NA	intron (NM_145055, intron 1 of 4)	AluY|SINE|Alu	7416	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
133870	chr2	128736671	128737000	+	0	NA	Intergenic	CpG	-127765	NR_110278	101927881		NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
126356	chr2	27430271	27430780	+	0	NA	intron (NM_013392, intron 1 of 17)	AluSz6|SINE|Alu	1894	NM_001321362	29959		NM_013392	ENSG00000115216	NRBP1	BCON3|MADM|MUDPNP|NRBP	nuclear receptor binding protein 1	protein-coding
140785	chr2	235671171	235671930	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	-153629	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
10607	chr1	67634971	67635330	+	0	NA	Intergenic	MIRb|SINE|MIR	-50051	NM_001924	1647		NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
206810	chr7	36970501	36970900	+	0	NA	intron (NM_014800, intron 16 of 21)	intron (NM_014800, intron 16 of 21)	14412	NM_001039459	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
133345	chr2	113921751	113922050	+	0	NA	intron (NM_005721, intron 3 of 11)	L2c|LINE|L2	-30908	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128545	chr2	60849471	60849900	+	0	NA	intron (NR_033980, intron 2 of 2)	intron (NR_033980, intron 2 of 2)	31629	NR_033980	400957		NR_033980	ENSG00000228414	REL-DT	LINC01185	REL divergent transcript	ncRNA
86747	chr16	67648801	67649000	+	0	NA	exon (NM_001013838, exon 17 of 38)	exon (NM_001013838, exon 17 of 38)	3756	NM_001013838	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
23301	chr1	228070271	228070630	+	0	NA	Intergenic	Intergenic	6100	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
181713	chr5	50669251	50669350	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	1886	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
239488	chrY	56748371	56748530	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-205805	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
23972	chr1	235169221	235169480	+	0	NA	intron (NM_016374, intron 23 of 23)	AluY|SINE|Alu	-8100	NR_144491	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
116036	chr19	17190071	17190230	+	0	NA	intron (NM_004145, intron 19 of 39)	intron (NM_004145, intron 19 of 39)	-25207	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
105398	chr17	82750321	82750630	+	0	NA	exon (NM_022158, exon 6 of 6)	exon (NM_022158, exon 6 of 6)	-1590	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
58040	chr12	124456421	124458230	+	0	NA	intron (NM_001077261, intron 7 of 47)	intron (NM_001077261, intron 7 of 47)	110287	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
4771	chr1	23539501	23540700	+	0	NA	Intergenic	Intergenic	-8867	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
34536	chr10	132913271	132913830	+	0	NA	intron (NM_001200049, intron 17 of 57)	MER1B|DNA|hAT-Charlie	29020	NM_001200049	54777		NM_017609	ENSG00000171811	CFAP46	C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	cilia and flagella associated protein 46	protein-coding
218722	chr8	58691501	58692180	+	0	NA	Intergenic	AluY|SINE|Alu	-31987	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
204088	chr7	2105551	2106200	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-16823	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
208405	chr7	66728771	66728930	+	0	NA	intron (NM_001367727, intron 4 of 11)	intron (NM_001367727, intron 4 of 11)	-11883	NM_001287062	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
201608	chr6	149365021	149365630	+	0	NA	intron (NM_001369506, intron 2 of 7)	intron (NM_001369506, intron 2 of 7)	-34937	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
88513	chr16	85313101	85313300	+	0	NA	Intergenic	Intergenic	-6875	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
27121	chr10	27893351	27893530	+	0	NA	intron (NM_018076, intron 17 of 19)	intron (NM_018076, intron 17 of 19)	88431	NM_001290021	55130		NM_018076	ENSG00000169126	ODAD2	ARMC4|CILD23|gudu	outer dynein arm docking complex subunit 2	protein-coding
135684	chr2	168717921	168718200	+	0	NA	intron (NM_203463, intron 8 of 9)	intron (NM_203463, intron 8 of 9)	68369	NR_045786	100861402		NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
59504	chr13	26872871	26873130	+	0	NA	Intergenic	Intergenic	-112214	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
224620	chr9	20514421	20515080	+	0	NA	intron (NM_001286691, intron 2 of 10)	HERVL74-int|LTR|ERVL	-12408	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
131890	chr2	98737751	98738050	+	0	NA	Intergenic	L2c|LINE|L2	-6768	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
193925	chr6	31642721	31643250	+	0	NA	exon (NM_001199698, exon 14 of 24)	exon (NM_001199698, exon 14 of 24)	9198	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
54561	chr12	92209951	92210550	+	0	NA	Intergenic	Intergenic	64165	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
124126	chr19	55672851	55673230	+	0	NA	intron (NM_007279, intron 11 of 11)	AluSx1|SINE|Alu	-2155	NM_001321263	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
236303	chrX	68443171	68443530	+	0	NA	Intergenic	Intergenic	-9855	NM_002547	4983		NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|MRXSBL|OPN1	oligophrenin 1	protein-coding
27828	chr10	38093951	38095830	+	0	NA	intron (NM_001178101, intron 1 of 6)	CpG	553	NM_001324247	7587		NM_003421	ENSG00000075407	ZNF37A	KOX21|ZNF37	zinc finger protein 37A	protein-coding
201958	chr6	152117801	152118000	+	0	NA	intron (NM_001328100, intron 6 of 6)	intron (NM_001328100, intron 6 of 6)	50387	NM_001347702	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
205613	chr7	22179571	22179750	+	0	NA	intron (NM_001367603, intron 1 of 5)	MER41B|LTR|ERV1	14085	NM_001367601	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
20185	chr1	193062801	193063450	+	0	NA	intron (NM_001042370, intron 1 of 9)	L1MB7|LINE|L1	-3049	NM_001350852	51377		NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
113240	chr19	8490851	8491250	+	0	NA	intron (NM_032152, intron 5 of 9)	intron (NM_032152, intron 5 of 9)	11590	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
18955	chr1	168543821	168544300	+	0	NA	promoter-TSS (NM_003175)	promoter-TSS (NM_003175)	-63	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
137394	chr2	196229921	196230850	+	0	NA	intron (NM_001348768, intron 21 of 28)	intron (NM_001348768, intron 21 of 28)	-29639	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
115552	chr19	15522001	15522350	+	0	NA	intron (NM_173483, intron 1 of 13)	L1MB2|LINE|L1	13650	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
80136	chr16	2082401	2083650	+	0	NA	intron (NM_001370404, intron 31 of 40)	intron (NM_001370404, intron 31 of 40)	7259	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
221221	chr8	120977151	120977250	+	0	NA	Intergenic	Intergenic	-165154	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
18437	chr1	161486871	161487500	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-18272	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
54292	chr12	89347501	89347900	+	0	NA	3' UTR (NM_001946, exon 3 of 3)	3' UTR (NM_001946, exon 3 of 3)	4801	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
5085	chr1	24705051	24705680	+	0	NA	Intergenic	Intergenic	-40082	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
215261	chr7	156999271	157000430	+	0	NA	Intergenic	CpG	-6457	NR_147077	105375606		NR_147077	ENSG00000235029	MNX1-AS2	-	MNX1 antisense RNA 2	ncRNA
176447	chr4	89290501	89291700	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	16700	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
135783	chr2	169767151	169767750	+	0	NA	Intergenic	Intergenic	-31421	NM_003142	6741		NM_003142	ENSG00000138385	SSB	LARP3|La|La/SSB	small RNA binding exonuclease protection factor La	protein-coding
65044	chr14	39187001	39188680	+	0	NA	Intergenic	L2a|LINE|L2	12586	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
36175	chr11	3168251	3168550	+	0	NA	Intergenic	Intergenic	-3090	NM_145638	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
217433	chr8	28489921	28490780	+	0	NA	promoter-TSS (NM_001258211)	promoter-TSS (NM_001258211)	-32	NM_001258211	157574		NM_172366	ENSG00000214050	FBXO16	FBX16	F-box protein 16	protein-coding
163872	chr3	52500201	52500530	+	0	NA	intron (NM_015136, intron 1 of 68)	L2b|LINE|L2	5027	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
138708	chr2	213128421	213128880	+	0	NA	intron (NM_001371277, intron 3 of 6)	AluSx|SINE|Alu	21787	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
95718	chr17	38567351	38567880	+	0	NA	intron (NM_025248, intron 3 of 18)	intron (NM_025248, intron 3 of 18)	38337	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
197176	chr6	62312521	62312600	+	0	NA	Intergenic	L1PA4|LINE|L1	-26333	NR_146872	202559		NM_152688	ENSG00000112232	KHDRBS2	KHDRBS2-OT|KHDRBS2-OT1|SLM-1|SLM1	KH RNA binding domain containing, signal transduction associated 2	protein-coding
67364	chr14	69725601	69725800	+	0	NA	Intergenic	Intergenic	-41442	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
147948	chr20	62957251	62957880	+	0	NA	exon (NM_001302643, exon 4 of 14)	exon (NM_001302643, exon 4 of 14)	4856	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
232518	chr9	136315821	136317600	+	0	NA	Intergenic	Intergenic	-9809	NM_001291516	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
14784	chr1	146078851	146078950	+	0	NA	intron (NM_001302371, intron 74 of 89)	intron (NM_001302371, intron 74 of 89)	26304	NR_125967	101928979		NR_125967		LINC01719	-	long intergenic non-protein coding RNA 1719	ncRNA
55936	chr12	109927371	109928130	+	0	NA	Intergenic	Intergenic	27173	NM_032300	84260		NM_032300	ENSG00000139437	TCHP	TpMs	trichoplein keratin filament binding	protein-coding
205714	chr7	23462821	23463080	+	0	NA	intron (NM_006547, intron 2 of 14)	intron (NM_006547, intron 2 of 14)	7541	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
31969	chr10	100739021	100740100	+	0	NA	intron (NM_001374303, intron 1 of 2)	CpG	4164	NM_001304569	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
35961	chr11	2791551	2792250	+	0	NA	intron (NM_181798, intron 15 of 15)	CpG	69669	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
202923	chr6	160347851	160347950	+	0	NA	promoter-TSS (NM_021977)	promoter-TSS (NM_021977)	-478	NM_021977	6581		NM_021977	ENSG00000146477	SLC22A3	EMT|EMTH|OCT3	solute carrier family 22 member 3	protein-coding
7303	chr1	32449251	32449350	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-15772	NM_001145720	728116		NM_001145720	ENSG00000273274	ZBTB8B	ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
79144	chr16	242001	242200	+	0	NA	intron (NM_001284497, intron 1 of 12)	intron (NM_001284497, intron 1 of 12)	7279	NM_001284497	83986		NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding
65552	chr14	51932071	51932450	+	0	NA	intron (NM_053064, intron 2 of 3)	AluY|SINE|Alu	-13689	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
229907	chr9	126609901	126610500	+	0	NA	Intergenic	Intergenic	-3728	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
76514	chr15	74996701	74996900	+	0	NA	intron (NR_033660, intron 1 of 5)	intron (NR_033660, intron 1 of 5)	1237	NM_001178111	192683		NM_138967	ENSG00000198794	SCAMP5	-	secretory carrier membrane protein 5	protein-coding
107293	chr18	44729171	44730530	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	28975	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
148152	chr20	63508121	63508650	+	0	NA	Intergenic	L1ME1|LINE|L1	-9302	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
136652	chr2	180005101	180005680	+	0	NA	intron (NM_001376029, intron 1 of 19)	AluY|SINE|Alu	1716	NM_001376029	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
184801	chr5	111230001	111231600	+	0	NA	intron (NM_001744, intron 1 of 10)	(T)n|Simple_repeat|Simple_repeat	6416	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
68572	chr14	89422921	89423180	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	5696	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
32147	chr10	101297771	101298550	+	0	NA	Intergenic	Intergenic	-34610	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
33723	chr10	122016621	122016700	+	0	NA	intron (NM_206862, intron 1 of 22)	LTR85a|LTR|Gypsy?	27497	NM_206862	10579		NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	transforming acidic coiled-coil containing protein 2	protein-coding
150962	chr21	44318271	44318630	+	0	NA	intron (NM_001002021, intron 12 of 24)	intron (NM_001002021, intron 12 of 24)	18397	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
17138	chr1	156183451	156184150	+	0	NA	Intergenic	AluSg|SINE|Alu	-10304	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
157805	chr22	46802271	46802430	+	0	NA	intron (NM_001284305, intron 4 of 12)	L2a|LINE|L2	28423	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
219186	chr8	66588001	66588480	+	0	NA	intron (NM_001144755, intron 8 of 14)	MIRb|SINE|MIR	24978	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
39395	chr11	60504371	60504680	+	0	NA	intron (NM_001164470, intron 4 of 5)	intron (NM_001164470, intron 4 of 5)	-10867	NM_001100909	503497		NM_001012417	ENSG00000204979	MS4A13	-	membrane spanning 4-domains A13	protein-coding
230791	chr9	128949621	128950200	+	0	NA	intron (NM_015354, intron 2 of 43)	AluSq2|SINE|Alu	2211	NM_015354	23511		NM_015354	ENSG00000095319	NUP188	KIAA0169|SANDSTEF|hNup188	nucleoporin 188	protein-coding
227459	chr9	90884321	90884580	+	0	NA	intron (NM_001135052, intron 10 of 12)	intron (NM_001135052, intron 10 of 12)	57030	NM_001174167	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
206204	chr7	28263701	28263900	+	0	NA	Intergenic	MIRb|SINE|MIR	-35521	NM_182899	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
141035	chr2	238201701	238201900	+	0	NA	intron (NM_030768, intron 1 of 11)	intron (NM_030768, intron 1 of 11)	1895	NM_030768	80895		NM_030768	ENSG00000132323	ILKAP	ILKAP2|ILKAP3|PP2C-DELTA|PP2CD|PPM1O	ILK associated serine/threonine phosphatase	protein-coding
119680	chr19	40907971	40908600	+	0	NA	Intergenic	Intergenic	-15980	NR_001278	1556		NR_001278	ENSG00000291083	CYP2B7P	CYP2B|CYP2B7|CYP2B7P1	cytochrome P450 family 2 subfamily B member 7, pseudogene	pseudo
230460	chr9	128202151	128202450	+	0	NA	intron (NM_001131015, intron 1 of 17)	intron (NM_001131015, intron 1 of 17)	-1079	NM_001374269	1759		NM_004408	ENSG00000106976	DNM1	DEE31|DEE31A|DEE31B|DNM|EIEE31	dynamin 1	protein-coding
229657	chr9	124343021	124343930	+	0	NA	intron (NM_001166169, intron 8 of 9)	intron (NM_001166169, intron 8 of 9)	-9998	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
136902	chr2	189581951	189582050	+	0	NA	Intergenic	Intergenic	-1214	NM_014585	30061		NM_014585	ENSG00000138449	SLC40A1	FPN|FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3	solute carrier family 40 member 1	protein-coding
199256	chr6	111847901	111848550	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	24846	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
105730	chr18	2728571	2728880	+	0	NA	intron (NM_015295, intron 23 of 47)	intron (NM_015295, intron 23 of 47)	72999	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
39360	chr11	59562171	59562530	+	0	NA	Intergenic	Intergenic	32808	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
48882	chr12	12483771	12484330	+	0	NA	intron (NM_030640, intron 5 of 6)	intron (NM_030640, intron 5 of 6)	78813	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
17831	chr1	159904571	159905130	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-4685	NM_012337	25790		NM_012337	ENSG00000213085	CFAP45	CCDC19|HTX11|NESG1	cilia and flagella associated protein 45	protein-coding
91686	chr17	5832801	5833130	+	0	NA	intron (NR_040000, intron 1 of 3)	MER101-int|LTR|ERV1	60731	NR_040000	339166		NR_040000	ENSG00000284837	LOC339166	-	uncharacterized LOC339166	ncRNA
119569	chr19	40650371	40650530	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	39714	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
104542	chr17	81293271	81293650	+	0	NA	intron (NM_001037984, intron 1 of 15)	intron (NM_001037984, intron 1 of 15)	1847	NM_001037984	124565		NM_138570	ENSG00000157637	SLC38A10	PP1744|SNAT10	solute carrier family 38 member 10	protein-coding
116584	chr19	18251751	18252650	+	0	NA	intron (NR_036575, intron 1 of 3)	intron (NR_036575, intron 1 of 3)	3219	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
67928	chr14	74684471	74685030	+	0	NA	intron (NM_001039479, intron 3 of 19)	intron (NM_001039479, intron 3 of 19)	28330	NM_001039479	9870		NM_014821	ENSG00000119682	AREL1	FIEL1|KIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding
42430	chr11	69124371	69124730	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	-31385	NR_161183	107984345		NM_001369201	ENSG00000284713	SMIM38	-	small integral membrane protein 38	protein-coding
83449	chr16	27321371	27321530	+	0	NA	intron (NM_001257997, intron 1 of 9)	intron (NM_001257997, intron 1 of 9)	7476	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
99565	chr17	50466051	50466350	+	0	NA	intron (NM_001267, intron 1 of 3)	AluY|SINE|Alu	-2129	NR_110232	80221		NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
33881	chr10	124448751	124449550	+	0	NA	intron (NM_001146340, intron 1 of 1)	CpG	885	NM_001146340	390010		NM_001146340	ENSG00000229544	NKX1-2	C10orf121|NKX-1.1|bB238F13.2	NK1 homeobox 2	protein-coding
161725	chr3	43998601	43998800	+	0	NA	Intergenic	CpG	-115512	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA
15975	chr1	151911221	151911630	+	0	NA	Intergenic	AluSz|SINE|Alu	-1914	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
16868	chr1	155753301	155753700	+	0	NA	intron (NM_001282860, intron 28 of 31)	intron (NM_001282860, intron 28 of 31)	7732	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
147660	chr20	62240201	62240400	+	0	NA	intron (NM_144498, intron 1 of 13)	intron (NM_144498, intron 1 of 13)	1779	NM_001278649	9885		NM_014835	ENSG00000130703	OSBPL2	DFNA67|DNFA67|ORP-2|ORP2	oxysterol binding protein like 2	protein-coding
55307	chr12	103657821	103658280	+	0	NA	intron (NM_017564, intron 15 of 68)	intron (NM_017564, intron 15 of 68)	70777	NM_017564	55576		NM_017564	ENSG00000136011	STAB2	FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1	stabilin 2	protein-coding
157661	chr22	46249671	46251350	+	0	NA	promoter-TSS (NM_207327)	promoter-TSS (NM_207327)	-217	NM_207327	150383		NM_207327	ENSG00000205643	CDPF1	C22orf40|CDKN1A	cysteine rich DPF motif domain containing 1	protein-coding
8874	chr1	43549901	43550380	+	0	NA	intron (NM_001329139, intron 3 of 32)	intron (NM_001329139, intron 3 of 32)	19257	NM_002840	5792		NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase receptor type F	protein-coding
99590	chr17	50510871	50512080	+	0	NA	intron (NR_158785, intron 1 of 17)	intron (NR_158785, intron 1 of 17)	3036	NM_001366294	84073		NM_032133	ENSG00000136449	MYCBPAP	AMAP-1|AMAP1	MYCBP associated protein	protein-coding
47543	chr12	4282601	4283430	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-6831	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
113573	chr19	10262321	10262580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8670	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
92484	chr17	8857871	8858630	+	0	NA	intron (NR_110865, intron 1 of 19)	intron (NR_110865, intron 1 of 19)	9424	NM_001010855	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
21682	chr1	206712601	206713530	+	0	NA	intron (NM_032960, intron 1 of 9)	L2c|LINE|L2	28160	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
216928	chr8	22737501	22737700	+	0	NA	intron (NM_001363233, intron 4 of 6)	intron (NM_001363233, intron 4 of 6)	-44120	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
133521	chr2	120207171	120207330	+	0	NA	Intergenic	AluJb|SINE|Alu	16150	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
9053	chr1	44815121	44815630	+	0	NA	Intergenic	Intergenic	6893	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
128321	chr2	54665321	54665950	+	0	NA	intron (NM_003128, intron 33 of 35)	intron (NM_003128, intron 33 of 35)	-59377	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
102322	chr17	75395671	75396380	+	0	NA	intron (NM_203506, intron 1 of 4)	AluSz|SINE|Alu	9653	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
165853	chr3	105864221	105864680	+	0	NA	intron (NM_001321811, intron 2 of 16)	intron (NM_001321811, intron 2 of 16)	3141	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
16161	chr1	153749071	153749780	+	0	NA	intron (NM_001324475, intron 7 of 30).2	intron (NM_001324475, intron 7 of 30).2	21375	NM_023015	65123		NM_023015	ENSG00000143624	INTS3	C1orf193|C1orf60|INT3|SOSS-A|SOSSA	integrator complex subunit 3	protein-coding
106007	chr18	7952951	7953250	+	0	NA	intron (NM_001378146, intron 2 of 29)	intron (NM_001378146, intron 2 of 29)	6225	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
236009	chrX	54808301	54809630	+	0	NA	promoter-TSS (NM_201222)	promoter-TSS (NM_201222)	-116	NM_201222	10916		NM_014599	ENSG00000102316	MAGED2	11B6|BARTS5|BCG-1|BCG1|HCA10|MAGE-D2	MAGE family member D2	protein-coding
154103	chr22	31083421	31083780	+	0	NA	intron (NR_168475, intron 2 of 20)	intron (NR_168475, intron 2 of 20)	740	NM_001207017	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
147589	chr20	61978021	61978480	+	0	NA	intron (NM_003185, intron 14 of 14)	CpG	-24588	NR_031658	100302168		NR_031658	ENSG00000284193	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
33188	chr10	113226471	113226650	+	0	NA	Intergenic	Intergenic	97289	NM_001349870	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
184665	chr5	107977721	107978180	+	0	NA	intron (NM_001163315, intron 7 of 8)	intron (NM_001163315, intron 7 of 8)	-307013	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
46036	chr11	122673601	122673880	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	18018	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
82255	chr16	15117651	15117950	+	0	NA	intron (NR_123722, intron 10 of 17)	intron (NR_123722, intron 10 of 17)	13801	NR_123722	105369154		NR_123721	ENSG00000270580	PKD1P6-NPIPP1	-	PKD1P6-NPIPP1 readthrough	pseudo
7917	chr1	37484851	37486030	+	0	NA	Intergenic	Intergenic	5210	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
197596	chr6	80214471	80214730	+	0	NA	intron (NM_000056, intron 8 of 10)	intron (NM_000056, intron 8 of 10)	107929	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
153736	chr22	29309621	29309880	+	0	NA	intron (NM_006478, intron 2 of 5)	intron (NM_006478, intron 2 of 5)	2727	NM_006478	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
135632	chr2	168211151	168212280	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	35880	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
81105	chr16	4368171	4368330	+	0	NA	intron (NM_001351729, intron 9 of 27)	AluSz|SINE|Alu	-3598	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
74348	chr15	58614551	58615450	+	0	NA	intron (NM_001320570, intron 10 of 14)	AluY|SINE|Alu	78607	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
220483	chr8	100480571	100481180	+	0	NA	Intergenic	AluSz6|SINE|Alu	78884	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
139446	chr2	223836001	223836280	+	0	NA	intron (NM_001039569, intron 1 of 4)	intron (NM_001039569, intron 1 of 4)	1442	NM_001039569	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
76773	chr15	76999921	77000550	+	0	NA	intron (NR_135552, intron 1 of 11)	intron (NR_135552, intron 1 of 11)	5109	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
53987	chr12	75209421	75209780	+	0	NA	5' UTR (NM_139137, exon 1 of 5)	5' UTR (NM_139137, exon 1 of 5)	148	NM_139136	3747		NM_139136	ENSG00000166006	KCNC2	DEE103|KV3.2	potassium voltage-gated channel subfamily C member 2	protein-coding
23679	chr1	231391051	231391150	+	0	NA	intron (NM_001377261, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	31187	NM_001377261	54583		NM_022051	ENSG00000135766	EGLN1	C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia inducible factor 1	protein-coding
82133	chr16	14732221	14732730	+	0	NA	Intergenic	Intergenic	-18338	NM_001277324	642799		NM_001277324	ENSG00000254852	NPIPA2	NPIP|NPIPA1	nuclear pore complex interacting protein family member A2	protein-coding
163245	chr3	50277271	50277430	+	0	NA	TTS (NR_110697)	TTS (NR_110697)	-1737	NM_153215	132228		NM_153215	ENSG00000179564	LSMEM2	C3orf45	leucine rich single-pass membrane protein 2	protein-coding
154256	chr22	31617771	31618530	+	0	NA	TTS (NM_001326419)	TTS (NM_001326419)	3381	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
81498	chr16	8951451	8952100	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	-2121	NR_135826	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
109553	chr19	881101	881300	+	0	NA	intron (NM_005481, intron 7 of 15)	intron (NM_005481, intron 7 of 15)	11987	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
6507	chr1	28514751	28514850	+	0	NA	intron (NM_001048199, intron 3 of 11)	Alu|SINE|Alu	-3426	NM_001048195	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
24040	chr1	235285821	235286280	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJb|SINE|Alu	-41166	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
106750	chr18	23576121	23576680	+	0	NA	intron (NM_000271, intron 1 of 24)	AluJb|SINE|Alu	10106	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
98296	chr17	46232271	46232430	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6983	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
28561	chr10	50635371	50635730	+	0	NA	Intergenic	Intergenic	10599	NR_126411	104355295		NR_126411		SGMS1-AS1	-	SGMS1 antisense RNA 1	ncRNA
78199	chr15	90573671	90573830	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	43827	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
207646	chr7	45058501	45059500	+	0	NA	intron (NM_001363458, intron 2 of 10)	AluSx1|SINE|Alu	29969	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
35872	chr11	2388401	2388700	+	0	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-10558	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
52771	chr12	56679871	56680400	+	0	NA	intron (NM_001282601, intron 1 of 6)	AluSz|SINE|Alu	8149	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
107140	chr18	35131171	35131530	+	0	NA	intron (NR_046177, intron 5 of 6)	MLT1A0|LTR|ERVL-MaLR	89937	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
67804	chr14	73771751	73772880	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-12012	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
219612	chr8	80091371	80091930	+	0	NA	intron (NM_001287144, intron 1 of 5)	intron (NM_001287144, intron 1 of 5)	-10819	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
99663	chr17	50721301	50722600	+	0	NA	intron (NM_001330330, intron 1 of 10)	intron (NM_001330330, intron 1 of 10)	2347	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
207990	chr7	55471321	55471580	+	0	NA	3' UTR (NM_001321247, exon 4 of 4)	3' UTR (NM_001321247, exon 4 of 4)	55430	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
43396	chr11	77113571	77113730	+	0	NA	intron (NM_004055, intron 4 of 12)	intron (NM_004055, intron 4 of 12)	10810	NM_006189	4975		NM_006189	ENSG00000254550	OMP	-	olfactory marker protein	protein-coding
199103	chr6	111677401	111677600	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	-71226	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
13760	chr1	117008371	117008600	+	0	NA	intron (NM_001256106, intron 1 of 9)	intron (NM_001256106, intron 1 of 9)	6735	NM_004258	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
198291	chr6	100107471	100107730	+	0	NA	Intergenic	Intergenic	-113362	NM_032503	84539		NM_032503	ENSG00000152034	MCHR2	GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT	melanin concentrating hormone receptor 2	protein-coding
188555	chr5	156934251	156934350	+	0	NA	intron (NM_001146726, intron 4 of 7)	AluJb|SINE|Alu	28926	NM_001146726	91937		NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T cell immunoglobulin and mucin domain containing 4	protein-coding
141906	chr20	891951	892050	+	0	NA	intron (NM_001322809, intron 1 of 7)	MER5A|DNA|hAT-Charlie	24334	NM_001322809	51378		NM_015985	ENSG00000101280	ANGPT4	ANG3|ANG4	angiopoietin 4	protein-coding
104373	chr17	81021171	81021630	+	0	NA	Intergenic	Intergenic	13319	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
74702	chr15	63042151	63042900	+	0	NA	promoter-TSS (NM_001365777)	promoter-TSS (NM_001365777)	-222	NM_001018020	7168		NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA	tropomyosin 1	protein-coding
186346	chr5	134759971	134760380	+	0	NA	intron (NR_125341, intron 1 of 22)	L2|LINE|L2	1396	NM_001300860	9879		NM_014829	ENSG00000145833	DDX46	PRPF5|Prp5	DEAD-box helicase 46	protein-coding
28292	chr10	46092251	46093150	+	0	NA	Intergenic	L1M4|LINE|L1	-16795	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
230873	chr9	129179351	129179900	+	0	NA	Intergenic	Intergenic	-1364	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
20940	chr1	202215011	202215150	+	0	NA	intron (NM_001017404, intron 1 of 15)	intron (NM_001017404, intron 1 of 15)	925	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
164697	chr3	67658771	67659200	+	0	NA	intron (NR_109992, intron 1 of 6)	intron (NR_109992, intron 1 of 6)	4288	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
140553	chr2	233267401	233269000	+	0	NA	intron (NM_001190266, intron 5 of 17).2	AluSx1|SINE|Alu	-7526	NR_003008	677775		NR_003008	ENSG00000252010	SCARNA5	U87	small Cajal body-specific RNA 5	ncRNA
19475	chr1	174987871	174988230	+	0	NA	intron (NM_001366454, intron 8 of 8)	AluSc8|SINE|Alu	-11385	NM_001007214	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
47645	chr12	6278271	6279450	+	0	NA	Intergenic	CpG	-31472	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
13795	chr1	117372871	117373030	+	0	NA	intron (NM_006699, intron 1 of 12)	MIRb|SINE|MIR	5501	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
143867	chr20	32544621	32544880	+	0	NA	intron (NM_001256798, intron 1 of 10)	MIRc|SINE|MIR	34791	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
19323	chr1	173431151	173431600	+	0	NA	intron (NR_125960, intron 1 of 1)	intron (NR_125960, intron 1 of 1)	29987	NR_125960	101928673		NR_125960	ENSG00000203739	PRDX6-AS1	-	PRDX6 antisense RNA 1	ncRNA
141656	chr2	241762321	241764360	+	0	NA	intron (NM_001352824, intron 9 of 9)	Tigger3c|DNA|TcMar-Tigger	-13482	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
137858	chr2	200823671	200824100	+	0	NA	TTS (NM_001321690)	TTS (NM_001321690)	11499	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
166833	chr3	122921721	122922230	+	0	NA	exon (NM_001256348, exon 11 of 22)	exon (NM_001256348, exon 11 of 22)	35462	NR_024618	100129550		NR_024618	ENSG00000273033	LINC02035	-	long intergenic non-protein coding RNA 2035	ncRNA
85754	chr16	56789371	56789650	+	0	NA	intron (NM_001242796, intron 1 of 19)	intron (NM_001242796, intron 1 of 19)	6054	NM_001242796	9688		NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
232040	chr9	133417571	133418600	+	0	NA	promoter-TSS (NM_001279351)	promoter-TSS (NM_001279351)	11	NM_001279349	57109		NM_020385	ENSG00000148300	REXO4	REX4|XPMC2|XPMC2H	REX4 homolog, 3'-5' exonuclease	protein-coding
113342	chr19	8638051	8638400	+	0	NA	intron (NM_001378600, intron 3 of 5)	intron (NM_001378600, intron 3 of 5)	7592	NM_001378599	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
210821	chr7	100885971	100886330	+	0	NA	intron (NM_015908, intron 12 of 19)	L2b|LINE|L2	3565	NM_001015072	402682		NM_001015072	ENSG00000176125	UFSP1	UFSP	UFM1 specific peptidase 1 (inactive)	protein-coding
52948	chr12	57454921	57455400	+	0	NA	promoter-TSS (NM_031479)	promoter-TSS (NM_031479)	-147	NM_031479	83729		NM_031479	ENSG00000139269	INHBE	-	inhibin subunit beta E	protein-coding
65206	chr14	49692551	49693680	+	0	NA	promoter-TSS (NM_172193)	promoter-TSS (NM_172193)	-5	NM_172193	122773		NM_172193	ENSG00000197776	KLHDC1	MST025	kelch domain containing 1	protein-coding
104079	chr17	80248371	80248530	+	0	NA	intron (NM_001166348, intron 13 of 16)	intron (NM_001166348, intron 13 of 16)	-12402	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
223741	chr8	144505171	144505800	+	0	NA	exon (NM_005309, exon 5 of 11)	exon (NM_005309, exon 5 of 11)	1345	NR_168476	2875		NM_005309	ENSG00000167701	GPT	AAT1|ALT|ALT1|GPT1|SGPT	glutamic--pyruvic transaminase	protein-coding
234077	chrX	8819251	8819450	+	0	NA	Intergenic	Intergenic	-17967	NM_174951	171482		NM_174951	ENSG00000183304	FAM9A	TEX39A	family with sequence similarity 9 member A	protein-coding
78027	chr15	89937651	89937950	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-24848	NM_001199058	100526783		NM_001199058	ENSG00000250021	ARPIN-AP3S2	ARPIN|C15orf38|C15orf38-AP3S2	ARPIN-AP3S2 readthrough	protein-coding
88615	chr16	85609121	85609380	+	0	NA	Intergenic	Intergenic	-2159	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
60840	chr13	45428001	45428400	+	0	NA	Intergenic	Intergenic	-9745	NM_001286806	253512		NM_001010875	ENSG00000174032	SLC25A30	KMCP1	solute carrier family 25 member 30	protein-coding
68223	chr14	76925471	76925630	+	0	NA	Intergenic	AluSg|SINE|Alu	-34088	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
153113	chr22	23675921	23676430	+	0	NA	intron (NR_024448, intron 10 of 11)	intron (NR_024448, intron 10 of 11)	-14686	NM_001329424	266747		NM_153615	ENSG00000159496	RGL4	Rgr	ral guanine nucleotide dissociation stimulator like 4	protein-coding
16308	chr1	154177701	154178500	+	0	NA	intron (NM_001364680, intron 2 of 8)	intron (NM_001364680, intron 2 of 8)	104	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
113193	chr19	8416421	8416880	+	0	NA	intron (NM_001369776, intron 1 of 5)	AluJo|SINE|Alu	-1702	NM_001369779	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
169418	chr3	161220771	161221980	+	0	NA	promoter-TSS (NM_015938)	promoter-TSS (NM_015938)	64	NM_015938	51068		NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
88774	chr16	87209921	87210280	+	0	NA	Intergenic	Intergenic	-2015	NR_110939	101928708		NR_110939	ENSG00000261095	LOC101928708	-	uncharacterized LOC101928708	ncRNA
43158	chr11	75341621	75342280	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	-6764	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
18729	chr1	167467551	167467850	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	50829	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
125517	chr2	12730221	12730480	+	0	NA	intron (NM_021643, intron 2 of 2)	MIR|SINE|MIR	-7017	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
102220	chr17	75233771	75233930	+	0	NA	intron (NM_024844, intron 16 of 18)	AluSc8|SINE|Alu	27756	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
43851	chr11	88092351	88092450	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	83043	NM_022337	23682		NM_022337	ENSG00000123892	RAB38	NY-MEL-1|rrGTPbp	RAB38, member RAS oncogene family	protein-coding
1342	chr1	2473951	2474250	+	0	NA	intron (NM_001303012, intron 1 of 21)	intron (NM_001303012, intron 1 of 21)	-2189	NM_014638	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
42331	chr11	68488171	68488730	+	0	NA	intron (NM_001352362, intron 2 of 24)	AluJb|SINE|Alu	27698	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
152424	chr22	20579401	20579600	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	71453	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
99009	chr17	48815601	48815880	+	0	NA	intron (NM_001366314, intron 1 of 13)	intron (NM_001366314, intron 1 of 13)	1350	NM_001366314	284076		NM_173623	ENSG00000170703	TTLL6	TTL.6	tubulin tyrosine ligase like 6	protein-coding
55867	chr12	109433751	109433950	+	0	NA	intron (NM_001101421, intron 19 of 30)	intron (NM_001101421, intron 19 of 30)	43450	NR_133897	83892		NM_031954	ENSG00000110906	KCTD10	BTBD28|MSTP028|ULRO61|hBACURD3	potassium channel tetramerization domain containing 10	protein-coding
158755	chr3	9382701	9383100	+	0	NA	intron (NM_001114092, intron 7 of 9)	AluJr|SINE|Alu	13723	NR_132781	440944		NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
169685	chr3	172041721	172042280	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	1469	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
116532	chr19	18195971	18196330	+	0	NA	TTS (NM_002866)	TTS (NM_002866)	2932	NM_032683	84769		NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial inner membrane protein like 2	protein-coding
39461	chr11	60977101	60977600	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	5670	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
125491	chr2	12502621	12503350	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-213887	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
6805	chr1	30906851	30906950	+	0	NA	intron (NM_014654, intron 1 of 4)	intron (NM_014654, intron 1 of 4)	1858	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
143438	chr20	30285401	30285600	+	0	NA	intron (NR_145432, intron 1 of 1)	intron (NR_145432, intron 1 of 1)	1037	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
34404	chr10	132389201	132390430	+	0	NA	Intergenic	Intergenic	-7385	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
197568	chr6	79697501	79697700	+	0	NA	intron (NM_031469, intron 3 of 3)	intron (NM_031469, intron 3 of 3)	66271	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
7639	chr1	35573151	35573980	+	0	NA	5' UTR (NM_178548, exon 1 of 7)	5' UTR (NM_178548, exon 1 of 7)	251	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
167788	chr3	133466551	133467000	+	0	NA	intron (NR_135276, intron 1 of 4)	intron (NR_135276, intron 1 of 4)	-10999	NR_135278	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
80602	chr16	2930251	2930350	+	0	NA	intron (NM_032296, intron 3 of 9)	intron (NM_032296, intron 3 of 9)	18321	NM_020912	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
204972	chr7	6380301	6380800	+	0	NA	intron (NM_018890, intron 1 of 6)	intron (NM_018890, intron 1 of 6)	6023	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
59436	chr13	25848251	25848350	+	0	NA	intron (NM_016529, intron 30 of 36)	intron (NM_016529, intron 30 of 36)	203716	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
38852	chr11	47333301	47333500	+	0	NA	intron (NM_000256, intron 28 of 33)	intron (NM_000256, intron 28 of 33)	19302	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
179315	chr4	179403021	179403100	+	0	NA	Intergenic	Intergenic	-1495124	NR_108092	101928656		NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
16742	chr1	155276671	155277790	+	0	NA	promoter-TSS (NR_073074).2	promoter-TSS (NR_073074).2	-233	NR_073074	57657		NM_020897	ENSG00000143630	HCN3	-	hyperpolarization activated cyclic nucleotide gated potassium channel 3	protein-coding
73125	chr15	41286971	41287130	+	0	NA	intron (NR_152821, intron 2 of 4)	L1MA9|LINE|L1	1708	NR_152821	729082		NR_026757	ENSG00000247556	OIP5-AS1	cyrano|linc-OIP5	OIP5 antisense RNA 1	ncRNA
27904	chr10	41890071	41890530	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	477745	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
39800	chr11	61965401	61966300	+	0	NA	TTS (NM_001363593)	TTS (NM_001363593)	1784	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
175800	chr4	77811171	77811780	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluSg|SINE|Alu	7589	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
238892	chrX	154583071	154583230	+	0	NA	Intergenic	Intergenic	-1983	NM_139250	246100		NM_139250	ENSG00000268651	CTAG1A	CT6.1|ESO1|LAGE-2|LAGE2A|NY-ESO-1	cancer/testis antigen 1A	protein-coding
134274	chr2	135745871	135746030	+	0	NA	intron (NM_014607, intron 1 of 12)	AluSc|SINE|Alu	-3306	NR_163478	107985946		NM_001365239		LOC107985946	-	uncharacterized LOC107985946	ncRNA
162976	chr3	49702321	49702580	+	0	NA	intron (NR_135218, intron 19 of 38)	intron (NR_135218, intron 19 of 38)	12893	NM_022064	63891		NM_022064	ENSG00000164068	RNF123	FP1477|KPC1	ring finger protein 123	protein-coding
183536	chr5	80031271	80031430	+	0	NA	intron (NM_001306213, intron 2 of 22)	LTR52|LTR|ERVL	-3998	NM_003248	7060		NM_003248	ENSG00000113296	THBS4	TSP-4|TSP4	thrombospondin 4	protein-coding
111720	chr19	4338101	4339050	+	0	NA	intron (NM_001013841, intron 1 of 12)	MIR1_Amn|SINE|MIR	252	NM_001013841	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
174094	chr4	32104351	32104450	+	0	NA	intron (NR_125936, intron 1 of 2)	MER51B|LTR|ERV1	-81978	NR_134682	105377651		NR_134682		LOC105377651	-	uncharacterized LOC105377651	ncRNA
213943	chr7	142690371	142690930	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	24351	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
125760	chr2	23375551	23375650	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-9579	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
183811	chr5	82676801	82677000	+	0	NA	Intergenic	Intergenic	-163255	NR_039773	100616297		NR_039773	ENSG00000283359	MIR3977	-	microRNA 3977	ncRNA
43026	chr11	74004901	74006330	+	0	NA	intron (NM_022803, intron 4 of 5)	intron (NM_022803, intron 4 of 5)	3470	NM_003356	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
84565	chr16	30609571	30611000	+	0	NA	promoter-TSS (NR_104166)	promoter-TSS (NR_104166)	104	NM_138447	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
176953	chr4	103075451	103077100	+	0	NA	5' UTR (NM_001300756, exon 1 of 10)	5' UTR (NM_001300756, exon 1 of 10)	486	NM_001370204	133308		NM_178833	ENSG00000164038	SLC9B2	NHA2|NHE10|NHEDC2	solute carrier family 9 member B2	protein-coding
82880	chr16	21552771	21553130	+	0	NA	Intergenic	Intergenic	-32506	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
162588	chr3	48683451	48684000	+	0	NA	intron (NM_184231, intron 1 of 12)	intron (NM_184231, intron 1 of 12)	2190	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
195601	chr6	37620071	37620230	+	0	NA	Intergenic	Intergenic	-64728	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
87876	chr16	78101051	78101150	+	0	NA	TTS (NR_120435)	TTS (NR_120435)	1446	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
159070	chr3	11770201	11771200	+	0	NA	Intergenic	Intergenic	-50161	NM_014667	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
116655	chr19	18342351	18342880	+	0	NA	intron (NM_001329477, intron 1 of 3)	intron (NM_001329477, intron 1 of 3)	2017	NM_017712	54858		NM_017712	ENSG00000130517	PGPEP1	PAP-I|PGI|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
192768	chr6	26475101	26476150	+	0	NA	intron (NR_038992, intron 3 of 3)	intron (NR_038992, intron 3 of 3)	6884	NR_038992	285819		NR_038992		LOC285819	-	uncharacterized LOC285819	ncRNA
51677	chr12	53068851	53069330	+	0	NA	intron (NM_032840, intron 6 of 10)	intron (NM_032840, intron 6 of 10)	10300	NM_032840	84926		NM_032840	ENSG00000167778	SPRYD3	-	SPRY domain containing 3	protein-coding
95796	chr17	38722621	38723200	+	0	NA	intron (NM_005937, intron 18 of 19)	intron (NM_005937, intron 18 of 19)	3219	NR_039879	100616153		NR_039879	ENSG00000273627	MIR4726	-	microRNA 4726	ncRNA
129889	chr2	73174021	73174730	+	0	NA	Intergenic	Intergenic	-28199	NM_001134462	344022		NM_001134462	ENSG00000214513	NOTO	-	notochord homeobox	protein-coding
219998	chr8	89993651	89993980	+	0	NA	Intergenic	Intergenic	-7537	NM_001330575	1666		NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	2,4-dienoyl-CoA reductase 1	protein-coding
92658	chr17	10646401	10646750	+	0	NA	intron (NM_002470, intron 10 of 40)	intron (NM_002470, intron 10 of 40)	10734	NM_002470	4621		NM_002470	ENSG00000109063	MYH3	CPSFS1A|CPSFS1B|CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE	myosin heavy chain 3	protein-coding
21989	chr1	209749521	209750050	+	0	NA	Intergenic	MIR|SINE|MIR	-6268	NR_109871	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
25981	chr10	11823221	11823950	+	0	NA	intron (NM_153256, intron 1 of 3)	CpG	229	NM_153256	254427		NM_153256	ENSG00000148426	PROSER2	C10orf47	proline and serine rich 2	protein-coding
84590	chr16	30653851	30654150	+	0	NA	intron (NM_024031, intron 6 of 11)	AluJr|SINE|Alu	3040	NM_024031	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
97913	chr17	45135201	45136450	+	0	NA	5' UTR (NM_001135707, exon 1 of 10)	5' UTR (NM_001135707, exon 1 of 10)	138	NM_001135707	79777		NM_024722	ENSG00000181513	ACBD4	HMFT0700	acyl-CoA binding domain containing 4	protein-coding
186379	chr5	134958201	134958400	+	0	NA	intron (NM_032151, intron 2 of 3)	intron (NM_032151, intron 2 of 3)	-9607	NM_178019	347732		NM_178019	ENSG00000152705	CATSPER3	CACRC	cation channel sperm associated 3	protein-coding
176603	chr4	99002571	99002930	+	0	NA	intron (NM_015143, intron 1 of 10)	intron (NM_015143, intron 1 of 10)	5363	NR_037455	100500867		NR_037455	ENSG00000265213	MIR3684	-	microRNA 3684	ncRNA
133463	chr2	119761951	119762050	+	0	NA	intron (NM_002830, intron 1 of 26)	intron (NM_002830, intron 1 of 26)	2078	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
149071	chr21	15728601	15729000	+	0	NA	Intergenic	Intergenic	-1134	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
183317	chr5	76699471	76699890	+	0	NA	intron (NM_001285462, intron 21 of 23)	(TC)n|Simple_repeat|Simple_repeat	-12723	NR_028375	100302746		NR_028375		NCRUPAR	NCRNA00193|ncR-uPAR	non-protein coding RNA, upstream of F2R/PAR1	ncRNA
106882	chr18	24426501	24427350	+	0	NA	intron (NM_018439, intron 1 of 10)	CpG	255	NM_018439	55364		NM_018439	ENSG00000154059	IMPACT	RWDD5	impact RWD domain protein	protein-coding
122399	chr19	49433601	49434400	+	0	NA	exon (NM_020309, exon 6 of 12)	exon (NM_020309, exon 6 of 12)	7527	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
195951	chr6	41935601	41936800	+	0	NA	intron (NM_001136126, intron 3 of 3)	intron (NM_001136126, intron 3 of 3)	5608	NM_001760	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
21238	chr1	204286651	204287600	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	72804	NM_014935	22874		NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
114844	chr19	13836121	13838100	+	0	NA	promoter-TSS (NR_029501)	promoter-TSS (NR_029501)	-451	NR_029495	407010		NR_029495	ENSG00000207980	MIR23A	MIRN23A|hsa-mir-23a|miRNA23A|mir-23a	microRNA 23a	ncRNA
116905	chr19	18781201	18781800	+	0	NA	3' UTR (NM_001098482, exon 15 of 15)	3' UTR (NM_001098482, exon 15 of 15)	9805	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
234226	chrX	13001651	13002550	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	26990	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
77305	chr15	82354551	82355700	+	0	NA	promoter-TSS (NR_004847)	promoter-TSS (NR_004847)	-11	NR_004847	100134869		NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	UBE2Q2 pseudogene 2	pseudo
190838	chr6	1606071	1606230	+	0	NA	non-coding (NR_125804, exon 2 of 2)	non-coding (NR_125804, exon 2 of 2)	619	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
48551	chr12	10226751	10227250	+	0	NA	Intergenic	Intergenic	-11961	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
19093	chr1	171313671	171314580	+	0	NA	promoter-TSS (NM_002022)	promoter-TSS (NM_002022)	-58	NM_002022	2329		NM_002022	ENSG00000076258	FMO4	FMO2	flavin containing dimethylaniline monoxygenase 4	protein-coding
45620	chr11	118914101	118915650	+	0	NA	intron (NM_001378213, intron 2 of 9)	AluSg7|SINE|Alu	4167	NR_039713	100616376		NR_039713	ENSG00000264211	MIR4492	mir-4492	microRNA 4492	ncRNA
88254	chr16	82639771	82639950	+	0	NA	intron (NM_001220488, intron 2 of 14)	intron (NM_001220488, intron 2 of 14)	12891	NM_001220492	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
30165	chr10	74186551	74187250	+	0	NA	intron (NM_001369124, intron 1 of 9)	L1ME2|LINE|L1	10137	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
174406	chr4	39355851	39356430	+	0	NA	intron (NM_001204747, intron 1 of 24)	AluSg|SINE|Alu	10222	NM_002913	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
207679	chr7	45124801	45125000	+	0	NA	Intergenic	Intergenic	-13153	NM_199122	9238		NM_004749	ENSG00000136270	TBRG4	CPR2|FASTKD4	transforming growth factor beta regulator 4	protein-coding
75832	chr15	69457211	69458350	+	0	NA	Intergenic	Intergenic	4962	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
137677	chr2	197463601	197464380	+	0	NA	intron (NM_001320818, intron 2 of 3)	(AT)n|Simple_repeat|Simple_repeat	10226	NM_001320819	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
33552	chr10	119303921	119304600	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	-73712	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
25792	chr10	11174021	11174380	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	9170	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
98485	chr17	47220271	47221500	+	0	NA	intron (NM_001002841, intron 4 of 7)	intron (NM_001002841, intron 4 of 7)	11537	NM_002476	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
223412	chr8	143933791	143934700	+	0	NA	intron (NM_201383, intron 11 of 31)	intron (NM_201383, intron 11 of 31)	5352	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
63961	chr14	22123171	22123580	+	0	NA	Intergenic	Intergenic	309378	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
160945	chr3	36906371	36906980	+	0	NA	intron (NM_014831, intron 1 of 22)	MLT1D|LTR|ERVL-MaLR	38379	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
72766	chr15	39744601	39744800	+	0	NA	intron (NM_001324338, intron 5 of 11)	intron (NM_001324338, intron 5 of 11)	38141	NM_001324338	161835		NM_152597	ENSG00000150667	FSIP1	HSD10	fibrous sheath interacting protein 1	protein-coding
44608	chr11	108571921	108572330	+	0	NA	intron (NM_001308019, intron 2 of 6)	intron (NM_001308019, intron 2 of 6)	-19896	NM_001144763	23086		NM_015065	ENSG00000110723	EXPH5	EBS4|SLAC2-B|SLAC2B	exophilin 5	protein-coding
131121	chr2	90326271	90326630	+	0	NA	Intergenic	Intergenic	-688543	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
126864	chr2	31980701	31981220	+	0	NA	intron (NR_163995, intron 1 of 7)	intron (NR_163995, intron 1 of 7)	29804	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
125336	chr2	10811841	10813530	+	0	NA	promoter-TSS (NM_005742)	promoter-TSS (NM_005742)	100	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
955	chr1	1751651	1752130	+	0	NA	3' UTR (NM_023018, exon 12 of 12)	3' UTR (NM_023018, exon 12 of 12)	-5891	NM_001199787	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
195865	chr6	41544121	41544680	+	0	NA	intron (NR_126415, intron 1 of 1)	intron (NR_126415, intron 1 of 1)	1843	NR_126417	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
30190	chr10	74445551	74445730	+	0	NA	intron (NM_001369124, intron 6 of 9)	intron (NM_001369124, intron 6 of 9)	83684	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
36733	chr11	9253021	9253680	+	0	NA	intron (NM_001243254, intron 1 of 22)	intron (NM_001243254, intron 1 of 22)	11976	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
100071	chr17	58232871	58233030	+	0	NA	Intergenic	Intergenic	-5476	NM_001160102	4025		NM_006151	ENSG00000167419	LPO	SPO	lactoperoxidase	protein-coding
210570	chr7	100355021	100355930	+	0	NA	intron (NR_036570, intron 12 of 16)	intron (NR_036570, intron 12 of 16)	-1176	NR_106899	102466747		NR_106899	ENSG00000284012	MIR6840	hsa-mir-6840	microRNA 6840	ncRNA
119148	chr19	39383501	39384130	+	0	NA	non-coding (NR_169271, exon 13 of 13)	non-coding (NR_169271, exon 13 of 13)	7291	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
51368	chr12	51823801	51825000	+	0	NA	intron (NM_001384995, intron 1 of 1)	intron (NM_001384995, intron 1 of 1)	7517	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
209477	chr7	76580201	76580400	+	0	NA	intron (NR_029411, intron 2 of 2)	intron (NR_029411, intron 2 of 2)	30959	NR_029411	100133091		NR_029411	ENSG00000290873	LINC03009	-	long intergenic non-protein coding RNA 3009	ncRNA
139479	chr2	224369021	224369380	+	0	NA	Intergenic	Intergenic	32794	NM_024785	79843		NM_024785	ENSG00000124019	FAM124B	-	family with sequence similarity 124 member B	protein-coding
88432	chr16	84754051	84754800	+	0	NA	intron (NR_073578, intron 3 of 10)	intron (NR_073578, intron 3 of 10)	54425	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
49205	chr12	15884601	15885250	+	0	NA	intron (NM_007178, intron 2 of 9)	intron (NM_007178, intron 2 of 9)	2538	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
3913	chr1	17349971	17350330	+	0	NA	intron (NM_012387, intron 10 of 15)	L2a|LINE|L2	-22046	NM_207421	353238		NM_207421	ENSG00000276747	PADI6	OZEMA16|PREMBL2|hPADVI	peptidyl arginine deiminase 6	protein-coding
111173	chr19	3360101	3360800	+	0	NA	intron (NM_205843, intron 1 of 10)	CpG-13279	820	NM_205843	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
33044	chr10	110852201	110853200	+	0	NA	Intergenic	Intergenic	18204	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
176704	chr4	101042351	101042450	+	0	NA	intron (NM_001130692, intron 9 of 11)	intron (NM_001130692, intron 9 of 11)	198472	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
115056	chr19	14163221	14163780	+	0	NA	intron (NM_014921, intron 4 of 22)	GA-rich|Low_complexity|Low_complexity	26348	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
188632	chr5	157217411	157218430	+	0	NA	intron (NM_005546, intron 5 of 16)	intron (NM_005546, intron 5 of 16)	37080	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
190467	chr5	180089021	180089280	+	0	NA	Intergenic	L1M4|LINE|L1	-17391	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
7602	chr1	35202071	35202450	+	0	NA	Intergenic	Intergenic	-9115	NM_005066	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
187424	chr5	142014121	142014450	+	0	NA	Intergenic	Intergenic	-1258	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
90827	chr17	2298771	2299250	+	0	NA	exon (NM_017575, exon 2 of 19)	exon (NM_017575, exon 2 of 19)	4775	NM_017575	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
12954	chr1	110874251	110874790	+	0	NA	intron (NM_001040033, intron 2 of 8)	intron (NM_001040033, intron 2 of 8)	1372	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
195739	chr6	39336201	39336400	+	0	NA	3' UTR (NM_001289024, exon 10 of 10)	3' UTR (NM_001289024, exon 10 of 10)	-13332	NM_001363784	83795		NM_032115	ENSG00000095981	KCNK16	K2p16.1|TALK-1|TALK1	potassium two pore domain channel subfamily K member 16	protein-coding
175214	chr4	56803251	56803900	+	0	NA	Intergenic	Intergenic	17898	NR_073419	6691		NM_021114	ENSG00000128040	SPINK2	HUSI-II|SPGF29	serine peptidase inhibitor Kazal type 2	protein-coding
214829	chr7	151250571	151250730	+	0	NA	intron (NM_001003802, intron 2 of 13)	intron (NM_001003802, intron 2 of 13)	-1956	NM_001003801	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
232454	chr9	136134051	136134150	+	0	NA	Intergenic	Intergenic	15080	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
23168	chr1	226754101	226754300	+	0	NA	Intergenic	L2a|LINE|L2	-15025	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
31662	chr10	97420151	97420650	+	0	NA	intron (NR_157582, intron 1 of 1)	intron (NR_157582, intron 1 of 1)	5657	NR_157582	644215		NR_157582		LOC644215	-	uncharacterized LOC644215	ncRNA
23400	chr1	228215471	228216380	+	0	NA	intron (NM_052843, intron 6 of 80)	intron (NM_052843, intron 6 of 80)	-2261	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
238725	chrX	154202151	154202330	+	0	NA	Intergenic	Intergenic	-17494	NM_000513	2652		NM_000513	ENSG00000268221	OPN1MW	CBBM|CBD|COD5|GCP|GOP|OPN1MW1	opsin 1, medium wave sensitive	protein-coding
153360	chr22	24430921	24431530	+	0	NA	promoter-TSS (NM_001278498)	promoter-TSS (NM_001278498)	-894	NM_001278498	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
162949	chr3	49553921	49555380	+	0	NA	promoter-TSS (NR_038866)	promoter-TSS (NR_038866)	173	NM_003458	8927		NM_003458	ENSG00000164061	BSN	ZNF231	bassoon presynaptic cytomatrix protein	protein-coding
224594	chr9	20358151	20358650	+	0	NA	intron (NM_001286691, intron 8 of 10)	intron (NM_001286691, intron 8 of 10)	52838	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
143361	chr20	26009521	26010630	+	0	NA	intron (NR_004846, intron 1 of 4)	CpG	276	NR_004846	100134868		NR_004846		LOC100134868	-	uncharacterized LOC100134868	ncRNA
15229	chr1	149558071	149559130	+	0	NA	Intergenic	CpG	-25223	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
11221	chr1	88874171	88874930	+	0	NA	intron (NM_001514, intron 2 of 6)	AluJr|SINE|Alu	17017	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
210327	chr7	99495071	99495230	+	0	NA	intron (NM_001345967, intron 1 of 1)	AluSg4|SINE|Alu	5131	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
85274	chr16	48584471	48584630	+	0	NA	intron (NM_153029, intron 1 of 6)	LTR37-int|LTR|ERV1	25630	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
165630	chr3	101753251	101754100	+	0	NA	intron (NM_024548, intron 6 of 10)	L1PA3|LINE|L1	-25536	NM_001348993	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
68706	chr14	90495371	90495880	+	0	NA	Intergenic	Intergenic	21584	NR_135274	105370619		NR_135274		LOC105370619	-	uncharacterized LOC105370619	ncRNA
105854	chr18	3052021	3052530	+	0	NA	Intergenic	L2|LINE|L2	-39131	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
210243	chr7	99384221	99385050	+	0	NA	intron (NM_005720, intron 1 of 9)	intron (NM_005720, intron 1 of 9)	9905	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
24611	chr1	246509671	246509830	+	0	NA	Intergenic	Intergenic	-2471	NM_001167740	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
23861	chr1	234779351	234779450	+	0	NA	Intergenic	Intergenic	-19344	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
65723	chr14	53107351	53107850	+	0	NA	intron (NM_030637, intron 1 of 11)	AluSx|SINE|Alu	45723	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
167294	chr3	128656001	128656400	+	0	NA	Intergenic	AluY|SINE|Alu	-5382	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
51924	chr12	53698451	53698850	+	0	NA	Intergenic	AluSz|SINE|Alu	-22320	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
77456	chr15	84360471	84360850	+	0	NA	Intergenic	Intergenic	-61859	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
78397	chr15	91941801	91942280	+	0	NA	intron (NM_013272, intron 2 of 9)	Charlie18a|DNA|hAT-Charlie	87736	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
10878	chr1	78079571	78079930	+	0	NA	intron (NM_017655, intron 1 of 5)	intron (NM_017655, intron 1 of 5)	33784	NM_017655	54810		NM_017655	ENSG00000137960	GIPC2	SEMCAP-2|SEMCAP2	GIPC PDZ domain containing family member 2	protein-coding
76253	chr15	74006871	74007230	+	0	NA	intron (NM_033238, intron 2 of 8)	MER34A1|LTR|ERV1	12334	NM_033244	5371		NM_002675	ENSG00000140464	PML	MYL|PP8675|RNF71|TRIM19	PML nuclear body scaffold	protein-coding
108428	chr18	69955071	69955450	+	0	NA	intron (NM_006566, intron 1 of 6)	intron (NM_006566, intron 1 of 6)	1539	NM_001303619	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
101625	chr17	68209101	68209930	+	0	NA	intron (NM_001346471, intron 1 of 6)	intron (NM_001346471, intron 1 of 6)	3386	NM_001346472	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
66057	chr14	58362671	58363030	+	0	NA	intron (NM_023000, intron 19 of 23)	AluSz|SINE|Alu	-33080	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
219966	chr8	89751771	89751930	+	0	NA	intron (NR_125822, intron 1 of 4)	intron (NR_125822, intron 1 of 4)	5861	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
183084	chr5	73902621	73902900	+	0	NA	intron (NM_001177693, intron 31 of 35)	intron (NM_001177693, intron 31 of 35)	89214	NM_001244364	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
65188	chr14	49626051	49628000	+	0	NA	intron (NM_001378453, intron 1 of 1)	AluSx1|SINE|Alu	6226	NM_002408	4247		NM_002408	ENSG00000168282	MGAT2	CDG2A|CDGS2|GLCNACTII|GNT-II|GNT2	alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
150182	chr21	39291851	39291950	+	0	NA	intron (NM_033656, intron 8 of 40)	LTR35B|LTR|ERV1	21732	NM_033656	54014		NM_018963	ENSG00000185658	BRWD1	C21orf107|CILD51|DCAF19|N143|WDR9|WRD9	bromodomain and WD repeat domain containing 1	protein-coding
45571	chr11	118840971	118841930	+	0	NA	Intergenic	AluSz6|SINE|Alu	-42442	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
41579	chr11	66337971	66338550	+	0	NA	exon (NM_001024957, exon 9 of 10)	exon (NM_001024957, exon 9 of 10)	-1486	NM_001363559	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
192796	chr6	26572501	26574000	+	0	NA	non-coding (NR_134611, exon 2 of 2)	non-coding (NR_134611, exon 2 of 2)	3926	NR_134611	105374988		NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
29380	chr10	70053551	70053930	+	0	NA	intron (NM_018649, intron 1 of 8)	CpG	894	NM_018649	55506		NM_018649	ENSG00000099284	MACROH2A2	H2AFY2	macroH2A.2 histone	protein-coding
135555	chr2	164992851	164993300	+	0	NA	Intergenic	Intergenic	-37550	NM_173512	151258		NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
52251	chr12	54416521	54416910	+	0	NA	intron (NM_002205, intron 1 of 29)	MIRb|SINE|MIR	2551	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
10171	chr1	61083301	61083980	+	0	NA	intron (NM_001145512, intron 2 of 11)	CpG	1079	NM_001134673	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
122093	chr19	48746801	48747450	+	0	NA	promoter-TSS (NM_182575)	promoter-TSS (NM_182575)	-216	NM_182575	284359		NM_182575	ENSG00000182264	IZUMO1	IZUMO|OBF	izumo sperm-oocyte fusion 1	protein-coding
120395	chr19	43738471	43739100	+	0	NA	intron (NM_019108, intron 7 of 13)	intron (NM_019108, intron 7 of 13)	16177	NM_019108	56006		NM_019108	ENSG00000105771	SMG9	C19orf61|F17127_1|HBMS|NEDITPO	SMG9 nonsense mediated mRNA decay factor	protein-coding
79088	chr16	177471	177630	+	0	NA	TTS (NM_000558)	TTS (NM_000558)	870	NM_000558	3039		NM_000558	ENSG00000206172	HBA1	ECYT7|HBA-T3|HBH|METHBA	hemoglobin subunit alpha 1	protein-coding
186073	chr5	134092951	134093630	+	0	NA	Intergenic	Intergenic	-21391	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
65881	chr14	55117851	55117950	+	0	NA	Intergenic	Intergenic	-11352	NM_001357678	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
104046	chr17	80138901	80139500	+	0	NA	intron (NM_014740, intron 6 of 11)	intron (NM_014740, intron 6 of 11)	7928	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
228975	chr9	113525971	113526800	+	0	NA	intron (NM_144488, intron 18 of 25)	intron (NM_144488, intron 18 of 25)	-10226	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
61889	chr13	77311471	77311830	+	0	NA	intron (NM_015057, intron 1 of 82)	L1MEf|LINE|L1	15444	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
207697	chr7	45854301	45854630	+	0	NA	Intergenic	Intergenic	-34023	NM_000596	3484		NM_000596	ENSG00000146678	IGFBP1	AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1	insulin like growth factor binding protein 1	protein-coding
137699	chr2	197493671	197494130	+	0	NA	intron (NM_199440, intron 6 of 11)	AluSx|SINE|Alu	5940	NM_002156	3329		NM_002156	ENSG00000144381	HSPD1	CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13	heat shock protein family D (Hsp60) member 1	protein-coding
215816	chr8	6205551	6205650	+	0	NA	Intergenic	AluYe5|SINE|Alu	200948	NR_040040	100287015		NR_040040	ENSG00000246089	MCPH1-DT	-	MCPH1 divergent transcript	ncRNA
3444	chr1	15901151	15901850	+	0	NA	intron (NM_015001, intron 3 of 14)	AluSz|SINE|Alu	-53353	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
215531	chr7	158772971	158773530	+	0	NA	intron (NM_020728, intron 7 of 21)	intron (NM_020728, intron 7 of 21)	56259	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
105030	chr17	82053871	82054700	+	0	NA	intron (NM_212492, intron 3 of 12)	intron (NM_212492, intron 3 of 12)	2387	NM_212492	2873		NM_004127	ENSG00000169727	GPS1	COPS1|CSN1|SGN1	G protein pathway suppressor 1	protein-coding
226492	chr9	71764451	71764630	+	0	NA	intron (NM_001135820, intron 1 of 22)	MIR3|SINE|MIR	3973	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
151184	chr21	45077501	45077700	+	0	NA	intron (NM_001346688, intron 1 of 11)	AluY|SINE|Alu	2549	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
69550	chr14	96559551	96559850	+	0	NA	intron (NM_001363665, intron 19 of 19)	L1MC5|LINE|L1	56835	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
185464	chr5	131277271	131277780	+	0	NA	intron (NM_001038702, intron 1 of 4)	L2b|LINE|L2	13472	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
2794	chr1	10910871	10911030	+	0	NA	Intergenic	MIR|SINE|MIR	55737	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
21055	chr1	203276721	203277580	+	0	NA	Intergenic	MIRc|SINE|MIR	-10002	NR_117097	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
141735	chr2	241873371	241874630	+	0	NA	TTS (NM_173821)	TTS (NM_173821)	4271	NM_173821	285093		NM_173821	ENSG00000188011	RTP5	C2orf85|CXXC11|Z3CXXC5	receptor transporter protein 5 (putative)	protein-coding
164990	chr3	71336921	71337180	+	0	NA	intron (NM_001349340, intron 3 of 19)	L1ME4a|LINE|L1	-32279	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
160358	chr3	27826571	27826730	+	0	NA	intron (NR_146630, intron 3 of 4)	LTR16A|LTR|ERVL	7486	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
129253	chr2	68373371	68373730	+	0	NA	intron (NM_002664, intron 1 of 8)	L1PA4|LINE|L1	8268	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
230091	chr9	127557271	127558000	+	0	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	11438	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
55668	chr12	107370701	107371280	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	50402	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
68502	chr14	88181021	88181330	+	0	NA	3' UTR (NM_021161, exon 7 of 7)	3' UTR (NM_021161, exon 7 of 7)	89736	NM_138318	54207		NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
205387	chr7	15685971	15686130	+	0	NA	exon (NM_005924, exon 1 of 3)	exon (NM_005924, exon 1 of 3)	633	NM_005924	4223		NM_005924	ENSG00000106511	MEOX2	GAX|MOX2	mesenchyme homeobox 2	protein-coding
197547	chr6	79075351	79075530	+	0	NA	intron (NM_017934, intron 4 of 39)	intron (NM_017934, intron 4 of 39)	2814	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
135389	chr2	160490851	160491550	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	2607	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
166443	chr3	113946451	113946750	+	0	NA	3' UTR (NM_001172105, exon 13 of 13)	3' UTR (NM_001172105, exon 13 of 13)	-1301	NM_001363952	254887		NM_173570	ENSG00000184307	ZDHHC23	DHHC-23|NIDD	zinc finger DHHC-type palmitoyltransferase 23	protein-coding
118194	chr19	35133821	35134280	+	0	NA	exon (NM_139284, exon 2 of 9)	exon (NM_139284, exon 2 of 9)	1009	NM_139284	163175		NM_139284	ENSG00000153902	LGI4	AMC1|AMCNMY|LGIL3	leucine rich repeat LGI family member 4	protein-coding
209499	chr7	76912201	76912630	+	0	NA	Intergenic	Intergenic	-68407	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
158114	chr22	50034621	50036000	+	0	NA	intron (NM_001350317, intron 9 of 13)	intron (NM_001350317, intron 9 of 13)	-22545	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
139497	chr2	224530051	224530680	+	0	NA	intron (NM_003590, intron 3 of 15)	intron (NM_003590, intron 3 of 15)	39590	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
236709	chrX	77898951	77900230	+	0	NA	exon (NM_001866, exon 1 of 3)	exon (NM_001866, exon 1 of 3)	122	NM_001866	1349		NM_001866	ENSG00000131174	COX7B	APLCC|LSDMCA2	cytochrome c oxidase subunit 7B	protein-coding
106707	chr18	23452501	23454250	+	0	NA	promoter-TSS (NM_003831)	promoter-TSS (NM_003831)	88	NR_145477	8780		NM_003831	ENSG00000101782	RIOK3	SUDD	RIO kinase 3	protein-coding
139836	chr2	230430901	230431780	+	0	NA	intron (NM_001080391, intron 2 of 28)	L1ME3G|LINE|L1	14584	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
218944	chr8	60930421	60930680	+	0	NA	Intergenic	L1PA15|LINE|L1	-19752	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
153655	chr22	28805271	28805430	+	0	NA	Intergenic	AluY|SINE|Alu	-4778	NM_005080	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
55377	chr12	104301101	104301800	+	0	NA	intron (NM_001261446, intron 2 of 13)	AluY|SINE|Alu	-2289	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
139511	chr2	224559101	224559380	+	0	NA	intron (NM_003590, intron 1 of 15)	AluJb|SINE|Alu	10715	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
192592	chr6	25986401	25987450	+	0	NA	3' UTR (NM_006355, exon 8 of 8)	3' UTR (NM_006355, exon 8 of 8)	24123	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
164646	chr3	66489351	66489650	+	0	NA	intron (NM_001377345, intron 1 of 18)	AluJb|SINE|Alu	10554	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
110403	chr19	1950521	1950980	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	3799	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
15905	chr1	151611501	151613100	+	0	NA	exon (NM_001330723, exon 1 of 12)	exon (NM_001330723, exon 1 of 12)	250	NM_030918	81609		NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin 27	protein-coding
161025	chr3	37967301	37967500	+	0	NA	intron (NM_005808, intron 3 of 6)	intron (NM_005808, intron 3 of 6)	-2004	NR_029499	407015		NR_029499	ENSG00000199075	MIR26A1	MIR26A|MIRN26A1|mir-26a-1	microRNA 26a-1	ncRNA
73236	chr15	41688671	41689130	+	0	NA	intron (NM_001164273, intron 2 of 23)	MLT1A|LTR|ERVL-MaLR	-2685	NR_030356	693211		NR_030356	ENSG00000207766	MIR626	MIRN626|hsa-mir-626	microRNA 626	ncRNA
186397	chr5	135326971	135327330	+	0	NA	intron (NR_161235, intron 3 of 5)	CpG	72081	NM_138610	9555		NM_004893	ENSG00000113648	MACROH2A1	H2A.y|H2A/y|H2AF12M|H2AFY|MACROH2A1.1|mH2A1|macroH2A1.2	macroH2A.1 histone	protein-coding
83011	chr16	22206901	22207750	+	0	NA	intron (NM_013302, intron 1 of 17).2	intron (NM_013302, intron 1 of 17).2	1047	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
170455	chr3	185916771	185917300	+	0	NA	3' UTR (NM_004593, exon 9 of 9)	3' UTR (NM_004593, exon 9 of 9)	20979	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
202642	chr6	158763951	158764450	+	0	NA	TTS (NR_037482)	TTS (NR_037482)	553	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
228641	chr9	106862571	106863200	+	0	NA	promoter-TSS (NM_021224)	promoter-TSS (NM_021224)	-281	NM_021224	58499		NM_021224	ENSG00000148143	ZNF462	WSKA|ZFPIP|Zfp462	zinc finger protein 462	protein-coding
39785	chr11	61951171	61951330	+	0	NA	intron (NM_001139443, intron 1 of 8)	AluSq2|SINE|Alu	899	NM_004183	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
153905	chr22	30308371	30309030	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	18241	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
206135	chr7	27665251	27665550	+	0	NA	Intergenic	L1MDa|LINE|L1	-2517	NM_152740	11112		NM_152740	ENSG00000106049	HIBADH	NS5ATP1	3-hydroxyisobutyrate dehydrogenase	protein-coding
60515	chr13	41352521	41353780	+	0	NA	intron (NM_024561, intron 9 of 19)	intron (NM_024561, intron 9 of 19)	-41112	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
93139	chr17	17739601	17739850	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	26577	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
41320	chr11	65896321	65896580	+	0	NA	intron (NR_125339, intron 1 of 2)	intron (NR_125339, intron 1 of 2)	3938	NM_005438	8061		NM_005438	ENSG00000175592	FOSL1	FRA|FRA1|fra-1	FOS like 1, AP-1 transcription factor subunit	protein-coding
122377	chr19	49389551	49390130	+	0	NA	intron (NM_144688, intron 1 of 19)	intron (NM_144688, intron 1 of 19)	1591	NM_144688	147872		NM_144688	ENSG00000161609	KASH5	CCDC155|POF22|SPGF88	KASH domain containing 5	protein-coding
95592	chr17	37362001	37362400	+	0	NA	intron (NM_198839, intron 4 of 59)	MLT1B|LTR|ERVL-MaLR	-3084	NM_198836	31		NM_000664	ENSG00000278540	ACACA	ACAC|ACACAD|ACACalpha|ACC|ACC1|ACCA|ACCalpha|Acac1|hACC1	acetyl-CoA carboxylase alpha	protein-coding
124875	chr2	8310571	8311630	+	0	NA	intron (NR_034135, intron 2 of 8)	intron (NR_034135, intron 2 of 8)	17319	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
175857	chr4	78954001	78954350	+	0	NA	Intergenic	Intergenic	-14737	NM_001350106	152559		NM_177453	ENSG00000163291	PAQR3	RKTG	progestin and adipoQ receptor family member 3	protein-coding
14394	chr1	144232401	144232930	+	0	NA	intron (NR_027356, intron 2 of 2).2	L2a|LINE|L2	15540	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
143848	chr20	32527601	32527980	+	0	NA	exon (NM_001256798, exon 2 of 11)	exon (NM_001256798, exon 2 of 11)	17831	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
124340	chr19	58308651	58309350	+	0	NA	intron (NR_144445, intron 2 of 3)	HERVK3-int|LTR|ERVK	3626	NR_144445	105372481		NM_001396080	ENSG00000142396	ERVK3-1	-	endogenous retrovirus group K3 member 1	protein-coding
194123	chr6	31965751	31966130	+	0	NA	exon (NM_006929, exon 18 of 28).3	exon (NM_006929, exon 18 of 28).3	-5235	NR_026717	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
72291	chr15	30989821	30990350	+	0	NA	intron (NM_017762, intron 2 of 15).2	intron (NM_017762, intron 2 of 15).2	1543	NM_017762	54893		NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
62616	chr13	100585771	100585930	+	0	NA	intron (NM_001195087, intron 1 of 2)	AluJr|SINE|Alu	2942	NM_001195087	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
172459	chr4	2008201	2010450	+	0	NA	promoter-TSS (NM_005663)	promoter-TSS (NM_005663)	-351	NM_005663	7469		NM_005663	ENSG00000185049	NELFA	NELF-A|P/OKcl.15|WHSC2	negative elongation factor complex member A	protein-coding
105217	chr17	82334951	82335750	+	0	NA	Intergenic	Intergenic	-1584	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
59574	chr13	27440321	27440880	+	0	NA	intron (NM_001166262, intron 2 of 4)	intron (NM_001166262, intron 2 of 4)	9589	NM_001166262	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
235219	chrX	41367521	41368050	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	33619	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
57496	chr12	122092821	122093550	+	0	NA	intron (NM_014938, intron 1 of 16)	(GT)n|Simple_repeat|Simple_repeat	14429	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
199915	chr6	127875971	127876550	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-21072	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
58357	chr12	131628821	131629500	+	0	NA	Intergenic	Intergenic	18961	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
257	chr1	918401	919000	+	0	NA	intron (NR_026874, intron 2 of 3)	intron (NR_026874, intron 2 of 3)	992	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
20442	chr1	198520451	198521630	+	0	NA	Intergenic	MIR3|SINE|MIR	19640	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
218022	chr8	38720001	38720700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8232	NM_001352792	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
204788	chr7	5619671	5619830	+	0	NA	TTS (NM_001377156)	TTS (NM_001377156)	26934	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
49929	chr12	39685801	39686400	+	0	NA	intron (NR_135051, intron 10 of 18)	MSTA-int|LTR|ERVL-MaLR	59917	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
122520	chr19	49618201	49618400	+	0	NA	intron (NM_020719, intron 9 of 13)	intron (NM_020719, intron 9 of 13)	21843	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
56293	chr12	112387121	112387880	+	0	NA	Intergenic	Intergenic	-5069	NM_001109662	283450		NM_173813	ENSG00000173064	HECTD4	C12ord51|C12orf51|HEEL|NEDSSCC|POTAGE	HECT domain E3 ubiquitin protein ligase 4	protein-coding
167972	chr3	136696021	136696280	+	0	NA	intron (NM_005862, intron 1 of 33)	MER65C|LTR|ERV1	56228	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
180186	chr5	1484601	1485450	+	0	NA	intron (NM_024830, intron 5 of 13)	intron (NM_024830, intron 5 of 13)	25831	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
72562	chr15	34512921	34513180	+	0	NA	Intergenic	Intergenic	15321	NR_036050	100302160		NR_036050	ENSG00000221649	MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
134618	chr2	144405001	144405400	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-72131	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
25596	chr10	8052261	8052680	+	0	NA	promoter-TSS (NR_104329)	promoter-TSS (NR_104329)	21	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
71166	chr14	105034621	105035180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13817	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
141869	chr20	671601	671880	+	0	NA	intron (NM_033129, intron 1 of 1)	intron (NM_033129, intron 1 of 1)	4062	NM_033129	85508		NM_033129	ENSG00000215397	SCRT2	ZNF898B	scratch family transcriptional repressor 2	protein-coding
36498	chr11	6394951	6396030	+	0	NA	TTS (NM_001365135)	TTS (NM_001365135)	5016	NR_027400	6609		NM_000543	ENSG00000166311	SMPD1	ASM|ASMASE|NPD	sphingomyelin phosphodiesterase 1	protein-coding
160671	chr3	32119371	32119530	+	0	NA	intron (NM_015141, intron 1 of 7)	intron (NM_015141, intron 1 of 7)	12830	NM_015141	23171		NM_015141	ENSG00000152642	GPD1L	GPD1-L	glycerol-3-phosphate dehydrogenase 1 like	protein-coding
33756	chr10	122463901	122464100	+	0	NA	intron (NM_002775, intron 1 of 8)	intron (NM_002775, intron 1 of 8)	2447	NM_002775	5654		NM_002775	ENSG00000166033	HTRA1	ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11	HtrA serine peptidase 1	protein-coding
37554	chr11	18709051	18709350	+	0	NA	intron (NM_173588, intron 18 of 22)	intron (NM_173588, intron 18 of 22)	10421	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
205014	chr7	6485301	6485500	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-1248	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
187209	chr5	140689671	140689830	+	0	NA	intron (NM_001289092, intron 2 of 10)	intron (NM_001289092, intron 2 of 10)	1620	NM_002109	3035		NM_002109	ENSG00000170445	HARS1	CMT2W|HARS|HRS|USH3B	histidyl-tRNA synthetase 1	protein-coding
91269	chr17	4045471	4046250	+	0	NA	intron (NM_015113, intron 37 of 54)	AluY|SINE|Alu	68757	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
95261	chr17	35487801	35489100	+	0	NA	promoter-TSS (NM_001195790)	promoter-TSS (NM_001195790)	-711	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
45737	chr11	119119971	119120130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1473	NM_001243259	25988		NM_015517	ENSG00000172273	HINFP	HiNF-P|MIZF|ZNF743	histone H4 transcription factor	protein-coding
236631	chrX	74605401	74606000	+	0	NA	intron (NM_016120, intron 1 of 3)	intron (NM_016120, intron 1 of 3)	8924	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
116360	chr19	17873851	17874850	+	0	NA	intron (NM_000453, intron 2 of 14)	intron (NM_000453, intron 2 of 14)	2405	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
35362	chr11	1255121	1255830	+	0	NA	exon (NM_002458, exon 37 of 49)	exon (NM_002458, exon 37 of 49)	-1130	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
119239	chr19	39476651	39477100	+	0	NA	TTS (NM_001319991)	TTS (NM_001319991)	-3963	NM_001329559	92609		NM_001001563	ENSG00000105197	TIMM50	MGCA9|TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
37042	chr11	12192751	12193250	+	0	NA	intron (NR_144415, intron 2 of 26)	MIRb|SINE|MIR	29317	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
138008	chr2	201266721	201266980	+	0	NA	intron (NM_033355, intron 3 of 9)	intron (NM_033355, intron 3 of 9)	6314	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
36105	chr11	3054471	3055030	+	0	NA	intron (NR_165428, intron 1 of 22)	MIR|SINE|MIR	2673	NM_001751	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
4623	chr1	22105601	22106430	+	0	NA	Intergenic	Intergenic	37082	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
118929	chr19	38742451	38742750	+	0	NA	intron (NM_144691, intron 2 of 20)	AluJo|SINE|Alu	1874	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
127173	chr2	38325621	38326050	+	0	NA	intron (NM_001330458, intron 1 of 11)	L1MB8|LINE|L1	50695	NM_001330460	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
134485	chr2	143263371	143264230	+	0	NA	intron (NM_018460, intron 6 of 13)	ERV3-16A3_I-int|LTR|ERVL	134381	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
158636	chr3	4983301	4984480	+	0	NA	3' UTR (NM_003670, exon 5 of 5)	3' UTR (NM_003670, exon 5 of 5)	-3929	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
135083	chr2	157182901	157183280	+	0	NA	Intergenic	Intergenic	-74615	NM_014568	11227		NM_014568	ENSG00000136542	GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
61414	chr13	51802921	51805830	+	0	NA	promoter-TSS (NM_001270424)	promoter-TSS (NM_001270424)	-212	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
145594	chr20	44553271	44554030	+	0	NA	intron (NM_007066, intron 1 of 3)	L2c|LINE|L2	21775	NM_007066	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
220158	chr8	95024271	95025850	+	0	NA	promoter-TSS (NM_001354519)	promoter-TSS (NM_001354519)	71	NR_148914	137682		NM_152416	ENSG00000156170	NDUFAF6	C8orf38|FRTS5|MC1DN17	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein-coding
171141	chr3	195553051	195553550	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-9975	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
6784	chr1	30765001	30765200	+	0	NA	Intergenic	L2a|LINE|L2	-7326	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
24319	chr1	237411171	237412030	+	0	NA	intron (NM_001035, intron 10 of 104)	MIR|SINE|MIR	-59519	NR_039626	100616141		NR_039626	ENSG00000266262	MIR4428	-	microRNA 4428	ncRNA
90446	chr17	1369201	1369400	+	0	NA	intron (NM_006761, intron 1 of 5)	AluSg7|SINE|Alu	30922	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
197825	chr6	87756921	87757180	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-27810	NR_110869	101928911		NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
136265	chr2	174677471	174677830	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	5249	NM_001077269	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
137970	chr2	201188171	201188700	+	0	NA	intron (NM_001230, intron 3 of 7)	AluSz|SINE|Alu	5294	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
24117	chr1	235649801	235651000	+	0	NA	promoter-TSS (NM_001098722)	promoter-TSS (NM_001098722)	208	NM_004485	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
66441	chr14	61536471	61536900	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	33509	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
237018	chrX	102601221	102601630	+	0	NA	intron (NM_001168480, intron 4 of 5)	intron (NM_001168480, intron 4 of 5)	1910	NM_022838	64860		NM_022838	ENSG00000125962	ARMCX5	GASP5	armadillo repeat containing X-linked 5	protein-coding
93906	chr17	21272571	21272730	+	0	NA	Intergenic	Intergenic	-12061	NM_145109	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
3719	chr1	16617021	16617650	+	0	NA	TTS (NR_026752)	TTS (NR_026752)	-3771	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
33276	chr10	114528801	114529000	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	-1987	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
90628	chr17	1651071	1652000	+	0	NA	exon (NM_006445, exon 41 of 43)	exon (NM_006445, exon 41 of 43)	-1669	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
234393	chrX	16607301	16607500	+	0	NA	intron (NM_175859, intron 17 of 18)	Charlie15a|DNA|hAT-Charlie	19685	NR_039762	100616428		NR_039762	ENSG00000265144	MIR548AM	-	microRNA 548am	ncRNA
41065	chr11	65495851	65496180	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1723	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
109085	chr18	79953921	79954450	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2532	NM_025078	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
194770	chr6	34115251	34115550	+	0	NA	intron (NM_001256809, intron 1 of 8)	intron (NM_001256809, intron 1 of 8)	-4637	NM_001256812	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
189190	chr5	171419311	171421400	+	0	NA	intron (NM_003862, intron 1 of 4)	CpG	708	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
164679	chr3	67583571	67583730	+	0	NA	intron (NM_001177599, intron 2 of 10)	MLT1E2|LTR|ERVL-MaLR	70962	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
100893	chr17	64392911	64394450	+	0	NA	Intergenic	L2c|LINE|L2	-2820	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
10368	chr1	64951451	64952480	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	14584	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
156342	chr22	40759951	40760530	+	0	NA	Intergenic	AluSg|SINE|Alu	53718	NR_039923	100616283		NR_039923	ENSG00000266594	MIR4766	mir-4766	microRNA 4766	ncRNA
41090	chr11	65526701	65527130	+	0	NA	intron (NM_020680, intron 5 of 17)	intron (NM_020680, intron 5 of 17)	1832	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
52537	chr12	56122901	56123300	+	0	NA	3' UTR (NM_001303125, exon 3 of 3)	3' UTR (NM_001303125, exon 3 of 3)	4683	NM_001303125	84872		NM_032786	ENSG00000135482	ZC3H10	ZC3HDC10	zinc finger CCCH-type containing 10	protein-coding
33083	chr10	110897051	110897430	+	0	NA	promoter-TSS (NR_039828)	promoter-TSS (NR_039828)	-850	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
150205	chr21	39380071	39381080	+	0	NA	5' UTR (NM_001350295, exon 1 of 5)	5' UTR (NM_001350295, exon 1 of 5)	117	NM_001350294	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
116736	chr19	18466871	18467830	+	0	NA	intron (NM_006532, intron 2 of 11)	intron (NM_006532, intron 2 of 11)	-29217	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
23902	chr1	234978221	234979630	+	0	NA	Intergenic	Intergenic	-14926	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
102118	chr17	75032221	75033190	+	0	NA	non-coding (NR_110835, exon 1 of 8)	non-coding (NR_110835, exon 1 of 8)	134	NR_110835	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
142383	chr20	3808921	3809180	+	0	NA	intron (NR_109859, intron 1 of 3)	AluSx3|SINE|Alu	556	NR_109859	101929125		NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
16546	chr1	154958951	154959830	+	0	NA	exon (NM_138300, exon 3 of 3)	exon (NM_138300, exon 3 of 3)	-2081	NM_001321726	101928120		NM_001321726		PYGO2-AS1	-	PYGO2 and SHC1 antisense RNA 1	ncRNA
58159	chr12	124943301	124943500	+	0	NA	Intergenic	Intergenic	27853	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
181013	chr5	35853471	35854000	+	0	NA	Intergenic	AluSz|SINE|Alu	-3156	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
219809	chr8	81427671	81427830	+	0	NA	Intergenic	L1PA3|LINE|L1	19689	NM_001348381	5375		NM_002677	ENSG00000147588	PMP2	CMT1G|FABP8|M-FABP|MP2|P2	peripheral myelin protein 2	protein-coding
23371	chr1	228165171	228167400	+	0	NA	promoter-TSS (NR_103540)	promoter-TSS (NR_103540)	481	NM_001010867	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
195528	chr6	37285971	37286330	+	0	NA	intron (NM_017772, intron 6 of 12)	intron (NM_017772, intron 6 of 12)	-27995	NR_104443								
17033	chr1	156069721	156069980	+	0	NA	intron (NR_133653, intron 3 of 3)	intron (NR_133653, intron 3 of 3)	8690	NR_133653	57111		NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
46694	chr11	128771271	128771430	+	0	NA	intron (NM_001167681, intron 4 of 9)	intron (NM_001167681, intron 4 of 9)	71119	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
10677	chr1	71068951	71069050	+	0	NA	intron (NM_005455, intron 8 of 10)	intron (NM_005455, intron 8 of 10)	-1284	NR_029707	406962		NR_029707	ENSG00000207721	MIR186	MIRN186|miR-186	microRNA 186	ncRNA
175351	chr4	69664271	69664430	+	0	NA	Intergenic	L1HS|LINE|L1	-11103	NM_001252274	10941		NM_006798	ENSG00000173610	UGT2A1	UDPGT2A1	UDP glucuronosyltransferase family 2 member A1 complex locus	protein-coding
140085	chr2	231449721	231450350	+	0	NA	Intergenic	AluJb|SINE|Alu	5901	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
226985	chr9	83334351	83334530	+	0	NA	intron (NM_174938, intron 6 of 13)	intron (NM_174938, intron 6 of 13)	-2479	NM_001244961	257019		NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
12230	chr1	100416971	100417350	+	0	NA	intron (NM_001319210, intron 4 of 16)	L2c|LINE|L2	64654	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
127720	chr2	43431571	43431930	+	0	NA	intron (NR_144316, intron 26 of 36)	AluJo|SINE|Alu	164224	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
188083	chr5	150167001	150167530	+	0	NA	exon (NM_001804, exon 1 of 3)	exon (NM_001804, exon 1 of 3)	487	NM_001804	1044		NM_001804	ENSG00000113722	CDX1	-	caudal type homeobox 1	protein-coding
183732	chr5	81145301	81145500	+	0	NA	intron (NM_006909, intron 17 of 26)	MLT1F1|LTR|ERVL-MaLR	-87920	NM_001099736	1160		NM_001825	ENSG00000131730	CKMT2	SMTCK	creatine kinase, mitochondrial 2	protein-coding
196353	chr6	43223171	43223330	+	0	NA	intron (NM_015089, intron 38 of 40)	intron (NM_015089, intron 38 of 40)	6231	NM_199184	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
149893	chr21	36078901	36079500	+	0	NA	intron (NR_040084, intron 2 of 3)	intron (NR_040084, intron 2 of 3)	9176	NM_001286789	873		NM_001757	ENSG00000159228	CBR1	CBR|PG-9-KR|SDR21C1|hCBR1	carbonyl reductase 1	protein-coding
185008	chr5	115261971	115263160	+	0	NA	intron (NM_005023, intron 1 of 8)	intron (NM_005023, intron 1 of 8)	312	NM_005023	5229		NM_005023	ENSG00000164219	PGGT1B	BGGI|GGTI	protein geranylgeranyltransferase type I subunit beta	protein-coding
233625	chrX	511921	512580	+	0	NA	Intergenic	Intergenic	-112094	NM_006883	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
114434	chr19	12689301	12690450	+	0	NA	intron (NM_032301, intron 6 of 9)	intron (NM_032301, intron 6 of 9)	1877	NM_001316692	105372280		NM_001316692	ENSG00000283980	GNG14	HG3K	G protein subunit gamma 14	protein-coding
86662	chr16	67471301	67471500	+	0	NA	intron (NM_004691, intron 1 of 7)	AluSz|SINE|Alu	9757	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
184252	chr5	96700071	96700430	+	0	NA	intron (NM_001375317, intron 3 of 30)	MER113A|DNA|hAT-Charlie	-2410	NM_001042446	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
190448	chr5	179904371	179904730	+	0	NA	intron (NM_015043, intron 2 of 20)	intron (NM_015043, intron 2 of 20)	3347	NM_198868	23061		NM_015043	ENSG00000197226	TBC1D9B	GRAMD9B	TBC1 domain family member 9B	protein-coding
10924	chr1	84109171	84109330	+	0	NA	intron (NM_207578, intron 1 of 8)	L1ME3A|LINE|L1	31171	NM_001375576	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
93337	chr17	18211771	18212150	+	0	NA	Intergenic	AluJb|SINE|Alu	-13675	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
92857	chr17	16349621	16349880	+	0	NA	intron (NM_181716, intron 2 of 4)	intron (NM_181716, intron 2 of 4)	3719	NM_181716	201161		NM_181716	ENSG00000166582	CENPV	3110013H01Rik|CENP-V|PRR6|p30	centromere protein V	protein-coding
282	chr1	937851	938700	+	0	NA	intron (NM_001385641, intron 5 of 13)	intron (NM_001385641, intron 5 of 13)	12544	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
80979	chr16	3959121	3959580	+	0	NA	Intergenic	AluJb|SINE|Alu	-8906	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
153532	chr22	26571101	26571730	+	0	NA	intron (NM_001362923, intron 1 of 7)	L2a|LINE|L2	-6074	NM_001008566	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
51878	chr12	53496851	53497100	+	0	NA	intron (NM_006301, intron 1 of 14)	MIRb|SINE|MIR	2483	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
197792	chr6	87685201	87685400	+	0	NA	intron (NM_018064, intron 1 of 4)	intron (NM_018064, intron 1 of 4)	16933	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
81733	chr16	11327321	11327950	+	0	NA	Intergenic	AluSx1|SINE|Alu	17577	NR_135174	105371083		NR_135174	ENSG00000263080	LOC105371083	-	uncharacterized LOC105371083	ncRNA
138464	chr2	206530271	206531230	+	0	NA	intron (NM_003812, intron 3 of 25)	intron (NM_003812, intron 3 of 25)	87218	NM_003812	8745		NM_003812	ENSG00000114948	ADAM23	MDC-3|MDC3	ADAM metallopeptidase domain 23	protein-coding
119167	chr19	39403401	39404520	+	0	NA	Intergenic	CpG	-2887	NM_003407	7538		NM_003407	ENSG00000128016	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding
179426	chr4	184287801	184288000	+	0	NA	Intergenic	Intergenic	66077	NR_040108	728175		NR_040108	ENSG00000180712	LINC02363	-	long intergenic non-protein coding RNA 2363	ncRNA
181319	chr5	40361221	40361930	+	0	NA	Intergenic	HAL1|LINE|L1	309284	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
82705	chr16	20804021	20804280	+	0	NA	intron (NM_080663, intron 1 of 10)	AluJo|SINE|Alu	2322	NM_080663	112479		NM_080663	ENSG00000196678	ERI2	EXOD1|ZGRF5	ERI1 exoribonuclease family member 2	protein-coding
134992	chr2	152701971	152702130	+	0	NA	intron (NM_001365600, intron 2 of 25)	intron (NM_001365600, intron 2 of 25)	15411	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
142089	chr20	2520801	2521000	+	0	NA	intron (NM_001282495, intron 1 of 6)	intron (NM_001282495, intron 1 of 6)	3622	NM_001282495	79175		NM_024325	ENSG00000088876	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
201463	chr6	148740551	148741200	+	0	NA	Intergenic	Intergenic	-6155	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
63802	chr14	21381901	21382480	+	0	NA	intron (NM_007192, intron 1 of 25)	intron (NM_007192, intron 1 of 25)	1829	NM_007192	11198		NM_007192	ENSG00000092201	SUPT16H	CDC68|FACTP140|NEDDFAC|SPT16|SPT16/CDC68	SPT16 homolog, facilitates chromatin remodeling subunit	protein-coding
51171	chr12	50214951	50215450	+	0	NA	intron (NM_001113547, intron 1 of 7)	intron (NM_001113547, intron 1 of 7)	7458	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
88930	chr16	87829171	87829900	+	0	NA	TTS (NM_003486)	TTS (NM_003486)	5125	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
55179	chr12	100294401	100295000	+	0	NA	intron (NM_001317784, intron 3 of 17)	SVA_D|Retroposon|SVA	27316	NM_001330253	55681		NM_017988	ENSG00000136021	SCYL2	AMC4|AMCNACC|CVAK104	SCY1 like pseudokinase 2	protein-coding
204294	chr7	2667701	2667900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11722	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
122871	chr19	50499071	50499530	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	11891	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
54146	chr12	76551271	76551850	+	0	NA	intron (NM_001319652, intron 1 of 25)	intron (NM_001319652, intron 1 of 25)	8211	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
108872	chr18	79388801	79389000	+	0	NA	Intergenic	L1M4b|LINE|L1	-7030	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
214410	chr7	149816821	149817080	+	0	NA	intron (NR_163594, intron 74 of 102)	intron (NR_163594, intron 74 of 102)	-21425	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
196059	chr6	42136551	42137430	+	0	NA	intron (NM_001164446, intron 1 of 4)	intron (NM_001164446, intron 1 of 4)	5630	NM_001164446	647024		NM_001164446	ENSG00000188112	C6orf132	LncCCLM|bA7K24.2	chromosome 6 open reading frame 132	protein-coding
175678	chr4	76993821	76995180	+	0	NA	intron (NM_001306147, intron 2 of 11)	intron (NM_001306147, intron 2 of 11)	44748	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
19116	chr1	171501721	171502380	+	0	NA	intron (NM_015172, intron 1 of 33)	FLAM_A|SINE|Alu	16520	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
26210	chr10	14567371	14567550	+	0	NA	intron (NM_001320736, intron 1 of 4)	L2|LINE|L2	4539	NM_001320736	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
3300	chr1	15348051	15348150	+	0	NA	intron (NM_052929, intron 17 of 30)	intron (NM_052929, intron 17 of 30)	-4217	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
5635	chr1	26200951	26201620	+	0	NA	intron (NM_198137, intron 8 of 9)	intron (NM_198137, intron 8 of 9)	10683	NM_198137	378807		NM_198137	ENSG00000188782	CATSPER4	-	cation channel sperm associated 4	protein-coding
188389	chr5	152505421	152505700	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-100281	NM_020167	56923		NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
186891	chr5	139565321	139566850	+	0	NA	intron (NM_181838, intron 2 of 7)	AluSx1|SINE|Alu	4746	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
84079	chr16	29604151	29604250	+	0	NA	intron (NR_135317, intron 1 of 11)	MER4D|LTR|ERV1	-4935	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
44807	chr11	113858071	113858230	+	0	NA	intron (NM_020886, intron 1 of 24)	AluSx1|SINE|Alu	17422	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
132481	chr2	105927101	105928100	+	0	NA	Intergenic	LTR67B|LTR|ERVL	75753	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
74506	chr15	60359621	60359980	+	0	NA	intron (NM_001002857, intron 6 of 13)	intron (NM_001002857, intron 6 of 13)	38186	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
85046	chr16	31878821	31879080	+	0	NA	intron (NM_001265588, intron 2 of 4)	LTR70|LTR|ERV1	5143	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
14024	chr1	120733771	120734780	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	10336	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
104097	chr17	80268551	80268850	+	0	NA	intron (NM_020954, intron 2 of 16)	(ATCC)n|Simple_repeat|Simple_repeat	7848	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
116113	chr19	17309151	17310950	+	0	NA	intron (NM_024050, intron 1 of 4)	CpG	487	NM_024050	79016		NM_024050	ENSG00000130311	DDA1	C19orf58|PCIA1	DET1 and DDB1 associated 1	protein-coding
234099	chrX	9354901	9355100	+	0	NA	Intergenic	Intergenic	-108295	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
38918	chr11	47425801	47427100	+	0	NA	promoter-TSS (NM_002804)	promoter-TSS (NM_002804)	-11	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
156193	chr22	40275651	40275750	+	0	NA	intron (NM_015088, intron 6 of 20)	AluSq2|SINE|Alu	-70800	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
57285	chr12	121639751	121640050	+	0	NA	intron (NM_032790, intron 2 of 2)	AluJr|SINE|Alu	13350	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
147187	chr20	56550551	56550900	+	0	NA	Intergenic	Intergenic	17479	NM_001013646	388799		NM_001013646	ENSG00000213714	FAM209B	C20orf107|dJ1153D9.4	family with sequence similarity 209 member B	protein-coding
60134	chr13	39602671	39603530	+	0	NA	promoter-TSS (NM_005780)	promoter-TSS (NM_005780)	93	NM_005780	10186		NM_005780	ENSG00000183722	LHFPL6	LHFP	LHFPL tetraspan subfamily member 6	protein-coding
203121	chr6	166707151	166707250	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	-79949	NM_021135	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
48237	chr12	8240171	8241100	+	0	NA	intron (NR_120454, intron 2 of 2)	intron (NR_120454, intron 2 of 2)	2311	NR_024254	653113		NR_024254		FAM86FP	-	family with sequence similarity 86, member A pseudogene	pseudo
205881	chr7	25103551	25103850	+	0	NA	Intergenic	Intergenic	21560	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
98761	chr17	48107101	48109080	+	0	NA	intron (NM_013323, intron 1 of 6)	intron (NM_013323, intron 1 of 6)	324	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
239206	chrY	12921571	12921730	+	0	NA	Intergenic	Intergenic	15945	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
192747	chr6	26404671	26405350	+	0	NA	intron (NM_194441, intron 1 of 9)	intron (NM_194441, intron 1 of 9)	2735	NM_001145009	11119		NM_007048	ENSG00000026950	BTN3A1	BT3.1|BTF5|BTN3.1|CD277	butyrophilin subfamily 3 member A1	protein-coding
50221	chr12	46225251	46225950	+	0	NA	intron (NM_001278387, intron 6 of 17)	HAL1|LINE|L1	40916	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
234142	chrX	10082551	10083980	+	0	NA	intron (NM_015691, intron 5 of 22)	intron (NM_015691, intron 5 of 22)	68011	NM_015691	55841		NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
42639	chr11	72408651	72408750	+	0	NA	intron (NM_001258394, intron 2 of 17)	intron (NM_001258394, intron 2 of 17)	25831	NM_030813	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
87366	chr16	70416671	70417030	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	22250	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
83640	chr16	28297821	28298480	+	0	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	5625	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
152209	chr22	20127401	20127800	+	0	NA	TTS (NM_001278641)	TTS (NM_001278641)	1198	NR_145765	109617010		NR_145765	ENSG00000264346	SNORA77B	-	small nucleolar RNA, H/ACA box 77B	snoRNA
165937	chr3	107543721	107544000	+	0	NA	intron (NM_020235, intron 2 of 16)	intron (NM_020235, intron 2 of 16)	20898	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
80060	chr16	1977151	1977480	+	0	NA	intron (NM_006453, intron 15 of 21)	intron (NM_006453, intron 15 of 21)	4154	NM_172168	124056		NM_144603	ENSG00000196408	NOXO1	P41NOX|P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28	NADPH oxidase organizer 1	protein-coding
50420	chr12	47394201	47395330	+	0	NA	Intergenic	AluY|SINE|Alu	-20243	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
141787	chr20	62601	62800	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-24972	NM_153325	245938		NM_153325	ENSG00000178591	DEFB125	DEFB-25	defensin beta 125	protein-coding
94731	chr17	30778151	30778480	+	0	NA	intron (NR_144395, intron 8 of 9)	AluSx1|SINE|Alu	46377	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
76326	chr15	74400601	74401780	+	0	NA	Intergenic	Intergenic	10242	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
185197	chr5	119395021	119395530	+	0	NA	TTS (NM_001286814)	TTS (NM_001286814)	39256	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
44267	chr11	102266671	102267100	+	0	NA	Intergenic	AluY|SINE|Alu	-50599	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
22428	chr1	220189851	220190150	+	0	NA	intron (NM_012414, intron 16 of 34)	intron (NM_012414, intron 16 of 34)	10619	NR_031705	100302234		NR_031705	ENSG00000281696	MIR664A	MIR664|MIRN664|hsa-mir-664|hsa-mir-664a|mir-664a	microRNA 664a	ncRNA
187036	chr5	139798301	139798700	+	0	NA	intron (NM_032289, intron 1 of 14)	intron (NM_032289, intron 1 of 14)	2692	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
205335	chr7	12635521	12636380	+	0	NA	intron (NM_033128, intron 7 of 13)	intron (NM_033128, intron 7 of 13)	46427	NM_033128	85477		NM_033128	ENSG00000006747	SCIN	-	scinderin	protein-coding
154219	chr22	31524001	31524850	+	0	NA	intron (NM_001258326, intron 2 of 30)	L1M2|LINE|L1	27889	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
114299	chr19	11768651	11768900	+	0	NA	intron (NM_152355, intron 1 of 3)	intron (NM_152355, intron 1 of 3)	1775	NM_152355	126068		NM_152355	ENSG00000197044	ZNF441	-	zinc finger protein 441	protein-coding
60635	chr13	42373001	42373400	+	0	NA	Intergenic	Intergenic	-51692	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
37313	chr11	14766251	14767100	+	0	NA	intron (NM_001363569, intron 1 of 15)	Charlie25|DNA|hAT-Charlie	122871	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
157266	chr22	43954571	43955960	+	0	NA	promoter-TSS (NM_015380)	promoter-TSS (NM_015380)	-177	NM_015380	25813		NM_015380	ENSG00000100347	SAMM50	CGI-51|OMP85|SAM50|TOB55|TRG-3|YNL026W	SAMM50 sorting and assembly machinery component	protein-coding
152584	chr22	21163371	21163750	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-4305	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
77275	chr15	82018271	82018430	+	0	NA	Intergenic	MLT1J1-int|LTR|ERVL-MaLR	27668	NM_032246	84206		NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
80095	chr16	2008641	2010680	+	0	NA	exon (NM_178167, exon 2 of 14)	exon (NM_178167, exon 2 of 14)	161	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
178126	chr4	141882851	141883030	+	0	NA	Intergenic	L1PA2|LINE|L1	246357	NR_037840	3600		NM_000585	ENSG00000164136	IL15	IL-15	interleukin 15	protein-coding
148717	chr21	6670501	6670700	+	0	NA	Intergenic	Intergenic	108680	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
6966	chr1	31770701	31771300	+	0	NA	Intergenic	Intergenic	-6660	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
139164	chr2	219177701	219178980	+	0	NA	promoter-TSS (NM_024293)	promoter-TSS (NM_024293)	65	NM_024293	79137		NM_024293	ENSG00000144567	RETREG2	C2orf17|FAM134A|MAG-2	reticulophagy regulator family member 2	protein-coding
25282	chr10	6147721	6147980	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	1602	NM_001282630	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
118467	chr19	35888171	35888530	+	0	NA	3' UTR (NM_001321831, exon 12 of 12)	3' UTR (NM_001321831, exon 12 of 12)	11387	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
43142	chr11	75293871	75294130	+	0	NA	intron (NM_020251, intron 1 of 14)	MLT1O|LTR|ERVL-MaLR	41186	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
543	chr1	1239201	1239430	+	0	NA	Intergenic	Intergenic	7078	NM_080605	126792		NM_080605	ENSG00000176022	B3GALT6	ALGAZ|EDSP2|EDSSPD2|SEMDJL1|beta3GalT6	beta-1,3-galactosyltransferase 6	protein-coding
193068	chr6	28713201	28714280	+	0	NA	Intergenic	AluSx3|SINE|Alu	-59265	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
119006	chr19	38895271	38895900	+	0	NA	intron (NM_001193286, intron 1 of 12)	intron (NM_001193286, intron 1 of 12)	-1430	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
63591	chr14	20477151	20478580	+	0	NA	TTS (NM_000270)	TTS (NM_000270)	8459	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
212400	chr7	128112351	128113250	+	0	NA	Intergenic	Intergenic	30939	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
729	chr1	1462121	1462980	+	0	NA	intron (NM_001039211, intron 10 of 11)	intron (NM_001039211, intron 10 of 11)	-9215	NM_031921	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
84960	chr16	31401371	31402100	+	0	NA	intron (NM_001318185, intron 5 of 29)	MIR|SINE|MIR	8400	NM_001318185	3681		NM_005353	ENSG00000156886	ITGAD	ADB2|CD11D	integrin subunit alpha D	protein-coding
95073	chr17	32909901	32910400	+	0	NA	Intergenic	Intergenic	-17760	NM_001301746	26022		NM_015544	ENSG00000006042	TMEM98	TADA1	transmembrane protein 98	protein-coding
200368	chr6	134172301	134173280	+	0	NA	intron (NM_001291995, intron 5 of 10)	intron (NM_001291995, intron 5 of 10)	2076	NM_005627	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
158561	chr3	4503051	4503150	+	0	NA	intron (NM_002222, intron 2 of 57)	AluSx1|SINE|Alu	9752	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
217388	chr8	28163751	28163850	+	0	NA	intron (NM_018091, intron 14 of 14)	intron (NM_018091, intron 14 of 14)	70661	NM_001284224	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
49423	chr12	22709301	22709550	+	0	NA	Intergenic	Intergenic	84254	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
191192	chr6	5273221	5273480	+	0	NA	intron (NM_001374876, intron 2 of 7)	L1MA4|LINE|L1	11837	NM_001374879	10667		NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
49375	chr12	22407021	22407900	+	0	NA	Intergenic	Intergenic	-72746	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
69089	chr14	92109551	92109650	+	0	NA	Intergenic	L2|LINE|L2	-2979	NM_001127697	4287		NM_004993	ENSG00000066427	ATXN3	AT3|ATX3|JOS|MJD|MJD1|SCA3	ataxin 3	protein-coding
71888	chr15	22474571	22474730	+	0	NA	Intergenic	Intergenic	7724	NR_036470	100132101		NR_036470		HERC2P7	-	HERC2 pseudogene 7	pseudo
206187	chr7	28168871	28169030	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-11507	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
199651	chr6	122404621	122404880	+	0	NA	intron (NM_001135564, intron 1 of 11)	intron (NM_001135564, intron 1 of 11)	5098	NM_001243094	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
148689	chr21	6271801	6272350	+	0	NA	Intergenic	Intergenic	-4739	NM_001322036	102724951		NM_001322036	ENSG00000276077	LINC03105	-	long intergenic non-protein coding RNA 3105	ncRNA
136189	chr2	174551371	174552000	+	0	NA	Intergenic	Intergenic	6387	NR_004394	26827		NR_004394	ENSG00000206625	RNU6-1	RNU6|RNU6A|U6|U6-1	RNA, U6 small nuclear 1	snRNA
64147	chr14	22885101	22885500	+	0	NA	exon (NM_173527, exon 3 of 5)	exon (NM_173527, exon 3 of 5)	2078	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
26411	chr10	17115121	17115380	+	0	NA	intron (NM_001081, intron 7 of 66)	AluSz6|SINE|Alu	14561	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
38141	chr11	35343051	35343430	+	0	NA	intron (NM_001195728, intron 1 of 11)	MER41E|LTR|ERV1	76318	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
95286	chr17	35522651	35522980	+	0	NA	5' UTR (NM_001363830, exon 2 of 5)	5' UTR (NM_001363830, exon 2 of 5)	15046	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
84995	chr16	31471821	31472180	+	0	NA	promoter-TSS (NM_001164719)	promoter-TSS (NM_001164719)	-152	NM_001042454	7041		NM_015927	ENSG00000140682	TGFB1I1	ARA55|HIC-5|HIC5|TSC-5	transforming growth factor beta 1 induced transcript 1	protein-coding
63262	chr13	113952451	113953050	+	0	NA	TTS (NM_001365455)	TTS (NM_001365455)	21326	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
19776	chr1	182248071	182248230	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	65911	NR_104175	400799		NR_104175		LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
13496	chr1	114724651	114724950	+	0	NA	intron (NM_001242891, intron 16 of 20)	AluJb|SINE|Alu	-8029	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
16758	chr1	155327851	155327950	+	0	NA	intron (NM_014328, intron 7 of 8)	intron (NM_014328, intron 7 of 8)	3393	NM_001278230	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
134868	chr2	148723101	148723500	+	0	NA	intron (NM_015630, intron 2 of 13)	L1MCa|LINE|L1	78549	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
148560	chr20	64258051	64258350	+	0	NA	intron (NM_018257, intron 1 of 5)	intron (NM_018257, intron 1 of 5)	2452	NM_018257	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
191049	chr6	3252521	3252780	+	0	NA	Intergenic	Intergenic	-6297	NM_001135750	389362		NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
199901	chr6	127861571	127861730	+	0	NA	intron (NM_001164687, intron 1 of 5).2	AluSx1|SINE|Alu	-6462	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
38848	chr11	47328401	47329180	+	0	NA	intron (NR_164842, intron 33 of 33)	intron (NR_164842, intron 33 of 33)	23912	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
141619	chr2	241673971	241675450	+	0	NA	TTS (NM_178326)	TTS (NM_178326)	12105	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
75189	chr15	64774751	64776400	+	0	NA	promoter-TSS (NR_138363)	promoter-TSS (NR_138363)	14	NR_138350	348093		NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
71181	chr14	105049601	105049800	+	0	NA	3' UTR (NM_013345, exon 4 of 4)	3' UTR (NM_013345, exon 4 of 4)	15730	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
89507	chr16	89160371	89160530	+	0	NA	non-coding (NR_024347, exon 3 of 4)	non-coding (NR_024347, exon 3 of 4)	1230	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
215698	chr8	1287101	1287530	+	0	NA	intron (NM_001346810, intron 3 of 14)	intron (NM_001346810, intron 3 of 14)	15292	NR_111948	286083		NR_033895	ENSG00000275427	LOC286083	-	uncharacterized LOC286083	ncRNA
51711	chr12	53201801	53202850	+	0	NA	intron (NM_000889, intron 1 of 15)	AluSx1|SINE|Alu	4926	NR_104181	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
55719	chr12	108296921	108297380	+	0	NA	intron (NM_001142344, intron 1 of 2)	Tigger2a|DNA|TcMar-Tigger	23512	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
236566	chrX	72304871	72305980	+	0	NA	intron (NM_001144885, intron 1 of 3)	CpG-29818	489	NM_001144887	4435		NM_004143	ENSG00000125931	CITED1	MSG1	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1	protein-coding
200396	chr6	134372451	134373030	+	0	NA	Intergenic	Intergenic	-54682	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
77622	chr15	85405671	85406300	+	0	NA	intron (NM_007200, intron 1 of 36)	AluJr|SINE|Alu	25382	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
85304	chr16	49442871	49443030	+	0	NA	Intergenic	Intergenic	69146	NM_144602	123970		NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
143910	chr20	32591321	32591580	+	0	NA	intron (NR_034152, intron 1 of 2)	L2a|LINE|L2	3971	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
224045	chr9	3506371	3506530	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	-17016	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
108976	chr18	79643151	79643450	+	0	NA	intron (NR_136643, intron 2 of 4)	intron (NR_136643, intron 2 of 4)	36445	NR_136643	284241		NM_182570	ENSG00000178412	CTDP1-DT	-	CTDP1 divergent transcript	ncRNA
225443	chr9	35100951	35101480	+	0	NA	exon (NM_001287031, exon 6 of 9)	exon (NM_001287031, exon 6 of 9)	1916	NM_013442	30968		NM_013442	ENSG00000165283	STOML2	HSPC108|SLP-2	stomatin like 2	protein-coding
4332	chr1	20491671	20492230	+	0	NA	Intergenic	MIRb|SINE|MIR	-5740	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
12431	chr1	103362351	103362650	+	0	NA	Intergenic	Intergenic	163008	NR_168321	101928436		NM_001286997	ENSG00000224613	RNPC3-DT	-	RNPC3 divergent transcript	ncRNA
11893	chr1	93178101	93178300	+	0	NA	intron (NR_030761, intron 1 of 4)	intron (NR_030761, intron 1 of 4)	2213	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
123694	chr19	55017021	55017480	+	0	NA	intron (NM_001083899, intron 6 of 7).8	AluSx1|SINE|Alu	21014	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
118838	chr19	38617251	38618400	+	0	NA	exon (NM_001042600, exon 1 of 31)	exon (NM_001042600, exon 1 of 31)	128	NM_001042600	11184		NM_007181	ENSG00000104814	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
11922	chr1	93510051	93510230	+	0	NA	intron (NM_001164473, intron 2 of 16)	L1PA3|LINE|L1	62009	NM_001164473	54874		NM_017737	ENSG00000137942	FNBP1L	C1orf39|TOCA1	formin binding protein 1 like	protein-coding
139505	chr2	224540721	224541000	+	0	NA	intron (NM_001257197, intron 1 of 14)	L1PA8A|LINE|L1	29095	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
46195	chr11	123454051	123454580	+	0	NA	intron (NM_001367421, intron 2 of 20)	intron (NM_001367421, intron 2 of 20)	24046	NM_001354837	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
188490	chr5	154784871	154785030	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	27796	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
74352	chr15	58627621	58628000	+	0	NA	exon (NM_001110, exon 10 of 16)	exon (NM_001110, exon 10 of 16)	65797	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
98053	chr17	45445001	45445200	+	0	NA	intron (NM_014798, intron 9 of 11).3	intron (NM_014798, intron 9 of 11).3	-12230	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
188761	chr5	157592501	157592900	+	0	NA	Intergenic	L1MC1|LINE|L1	-16925	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
220523	chr8	100682921	100683330	+	0	NA	Intergenic	AluJr|SINE|Alu	19899	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
182683	chr5	67514751	67515700	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	131564	NR_147169	105379006		NR_147169	ENSG00000249736	LINC02242	-	long intergenic non-protein coding RNA 2242	ncRNA
191343	chr6	7128421	7128700	+	0	NA	intron (NM_001003698, intron 1 of 11)	MIRb|SINE|MIR	20599	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
104108	chr17	80279101	80279300	+	0	NA	intron (NM_020954, intron 3 of 16)	intron (NM_020954, intron 3 of 16)	18348	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
165492	chr3	99875771	99876780	+	0	NA	promoter-TSS (NM_014890)	promoter-TSS (NM_014890)	-72	NM_001282793	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
46408	chr11	126337551	126337850	+	0	NA	intron (NM_014026, intron 3 of 5)	intron (NM_014026, intron 3 of 5)	17887	NR_033839	399972		NR_033839		GSEC	DCPS-AS1|ST3GAL4-AS1	G-quadruplex forming sequence containing lncRNA	ncRNA
191227	chr6	5766351	5766450	+	0	NA	intron (NM_001374875, intron 6 of 6)	intron (NM_001374875, intron 6 of 6)	-71128	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
113991	chr19	10833171	10833400	+	0	NA	intron (NM_006858, intron 3 of 3)	intron (NM_006858, intron 3 of 3)	2455	NR_104015	11018		NM_006858	ENSG00000099203	TMED1	IL1RL1LG|Il1rl1l|Tp24|p24g1	transmembrane p24 trafficking protein 1	protein-coding
236598	chrX	73892801	73893030	+	0	NA	Intergenic	L1PA7|LINE|L1	-40162	NR_001564	7503		NR_001564	ENSG00000229807	XIST	DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66	X inactive specific transcript	ncRNA
121120	chr19	45994801	45996330	+	0	NA	promoter-TSS (NM_001267723)	promoter-TSS (NM_001267723)	98	NM_001267723	729440		NM_001080402	ENSG00000104983	CCDC61	VFL3|hVFL3	coiled-coil domain containing 61	protein-coding
153911	chr22	30314171	30314430	+	0	NA	intron (NM_001204240, intron 1 of 8)	MIRc|SINE|MIR	12641	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
215666	chr8	665821	666100	+	0	NA	intron (NM_207332, intron 5 of 5)	intron (NM_207332, intron 5 of 5)	65264	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
140804	chr2	236344871	236345030	+	0	NA	intron (NM_001270585, intron 15 of 18)	intron (NM_001270585, intron 15 of 18)	-80605	NM_212556	401036		NM_212556	ENSG00000182177	ASB18	ASB-18	ankyrin repeat and SOCS box containing 18	protein-coding
179782	chr5	332951	333250	+	0	NA	intron (NM_001377239, intron 1 of 10)	AluJr|SINE|Alu	10490	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
221626	chr8	125729071	125729800	+	0	NA	Intergenic	Intergenic	221762	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
199378	chr6	116271051	116271530	+	0	NA	intron (NM_001322937, intron 2 of 6)	MER5A|DNA|hAT-Charlie	8640	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
115160	chr19	14416651	14417200	+	0	NA	intron (NR_046366, intron 1 of 9)	AluJb|SINE|Alu	2416	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
46160	chr11	123067651	123068180	+	0	NA	Intergenic	AluSx|SINE|Alu	-5779	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
134896	chr2	149080921	149081180	+	0	NA	intron (NM_001317004, intron 1 of 6)	intron (NM_001317004, intron 1 of 6)	3528	NM_001317004	130576		NM_177964	ENSG00000150556	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
174321	chr4	38661421	38662130	+	0	NA	intron (NR_026804, intron 1 of 7)	AluSz6|SINE|Alu	-2424	NM_016531	51274		NM_016531	ENSG00000109787	KLF3	BKLF	KLF transcription factor 3	protein-coding
62536	chr13	99600351	99600830	+	0	NA	Intergenic	Intergenic	-6074	NM_206808	171425		NM_206808	ENSG00000125246	CLYBL	CLB	citramalyl-CoA lyase	protein-coding
213141	chr7	131501271	131502280	+	0	NA	3' UTR (NM_001018111, exon 9 of 9)	3' UTR (NM_001018111, exon 9 of 9)	54853	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
123793	chr19	55148971	55149530	+	0	NA	promoter-TSS (NM_001126133)	promoter-TSS (NM_001126133)	-44	NM_001126132	7138		NM_003283	ENSG00000105048	TNNT1	ANM|NEM5|STNT|TNT|TNTS	troponin T1, slow skeletal type	protein-coding
61132	chr13	48564101	48564300	+	0	NA	Intergenic	Intergenic	16701	NR_051983	100129597		NR_051983	ENSG00000233610	LINC00462	-	long intergenic non-protein coding RNA 462	ncRNA
134437	chr2	143142251	143142630	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	13021	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
194558	chr6	33373871	33374630	+	0	NA	Intergenic	LTR29|LTR|ERV1	-17573	NM_002263	3833		NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
204439	chr7	3302251	3302750	+	0	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	1248	NM_152744	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
117218	chr19	19410671	19411750	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	5535	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
157298	chr22	44336071	44336430	+	0	NA	Intergenic	Intergenic	-23299	NM_001099294	85352		NM_001099294	ENSG00000138944	SHISAL1	KIAA1644	shisa like 1	protein-coding
52952	chr12	57458451	57461000	+	0	NA	promoter-TSS (NM_005269)	promoter-TSS (NM_005269)	-60	NM_005269	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
169930	chr3	178385351	178385650	+	0	NA	Intergenic	Intergenic	-33701	NR_046786	100874330		NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA
59735	chr13	29886201	29887030	+	0	NA	intron (NR_046510, intron 1 of 1)	MER5A1|DNA|hAT-Charlie	1790	NR_046510	100874059		NR_046510	ENSG00000224329	LINC00297	NCRNA00297	long intergenic non-protein coding RNA 297	ncRNA
97884	chr17	45100101	45100300	+	0	NA	intron (NM_021079, intron 8 of 11)	AluJb|SINE|Alu	14233	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
168220	chr3	141279051	141279610	+	0	NA	intron (NM_152282, intron 5 of 7)	intron (NM_152282, intron 5 of 7)	-44856	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
216065	chr8	10417601	10418000	+	0	NA	intron (NM_001199729, intron 6 of 6).2	intron (NM_001199729, intron 6 of 6).2	-56765	NR_120604	101929191		NR_120604	ENSG00000253641	LINC03022	LINCR-0001	long intergenic non-protein coding RNA 3022	ncRNA
24777	chr1	248864471	248864630	+	0	NA	Intergenic	Intergenic	-5465	NM_001350072	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
167849	chr3	134212921	134213650	+	0	NA	intron (NM_001005861, intron 2 of 14)	MIRb|SINE|MIR	37459	NM_001005861	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
5076	chr1	24679521	24679780	+	0	NA	Intergenic	AluSq2|SINE|Alu	36071	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
66240	chr14	61341201	61341750	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	20032	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
185222	chr5	122076951	122078080	+	0	NA	promoter-TSS (NM_001317073)	promoter-TSS (NM_001317073)	-292	NM_001178102	4015		NM_002317	ENSG00000113083	LOX	AAT10	lysyl oxidase	protein-coding
9822	chr1	53944771	53947230	+	0	NA	promoter-TSS (NM_001382254)	promoter-TSS (NM_001382254)	-301	NR_133633	51668		NM_016126	ENSG00000081870	IFT25	C1orf41|CFAP232|FAP232|HSPB11|HSPCO34|PP25	intraflagellar transport 25	protein-coding
47830	chr12	6597351	6598230	+	0	NA	intron (NM_001273, intron 12 of 39)	intron (NM_001273, intron 12 of 39)	8661	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
109804	chr19	1156621	1157280	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	17318	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
172541	chr4	2366301	2366650	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	-1661	NM_001172659	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
182784	chr5	68433851	68434930	+	0	NA	Intergenic	Intergenic	141813	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
151352	chr21	45737851	45738150	+	0	NA	intron (NM_001382287, intron 2 of 15)	intron (NM_001382287, intron 2 of 15)	-10014	NM_001348243	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
193096	chr6	28895001	28895900	+	0	NA	Intergenic	Intergenic	-1080	NR_104117	414760		NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14	ncRNA
177412	chr4	112297121	112297750	+	0	NA	promoter-TSS (NM_001102406)	promoter-TSS (NM_001102406)	66	NM_001102406	80216		NM_025144	ENSG00000073331	ALPK1	8430410J10Rik|LAK|ROSAH	alpha kinase 1	protein-coding
24257	chr1	236394321	236394580	+	0	NA	promoter-TSS (NM_080738)	promoter-TSS (NM_080738)	164	NM_145861	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
132958	chr2	111467551	111467650	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	27561	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
195153	chr6	35727501	35728700	+	0	NA	intron (NR_027117, intron 9 of 9)	CpG	483	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
191076	chr6	3457821	3458400	+	0	NA	intron (NR_147844, intron 1 of 1)	intron (NR_147844, intron 1 of 1)	-1060	NM_001382317	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
8164	chr1	39508901	39509830	+	0	NA	intron (NM_181809, intron 1 of 6)	intron (NM_181809, intron 1 of 6)	-5501	NR_132962	192217		NR_132962	ENSG00000237624	OXCT2P1	OXCT2P	3-oxoacid CoA-transferase 2 pseudogene 1	pseudo
13285	chr1	112954271	112954430	+	0	NA	intron (NM_003051, intron 1 of 4)	intron (NM_003051, intron 1 of 4)	1713	NM_001166496	6566		NM_003051	ENSG00000155380	SLC16A1	HHF7|MCT|MCT1|MCT1D	solute carrier family 16 member 1	protein-coding
174827	chr4	48271221	48271680	+	0	NA	Intergenic	Intergenic	-1612	NM_003215	7006		NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
135490	chr2	161709471	161709630	+	0	NA	intron (NM_001178016, intron 2 of 26)	intron (NM_001178016, intron 2 of 26)	85134	NM_001354449	57282		NM_022058	ENSG00000144290	SLC4A10	NBCn2|NCBE	solute carrier family 4 member 10	protein-coding
95495	chr17	36263071	36263450	+	0	NA	intron (NM_001291463, intron 1 of 13).13	intron (NM_001291463, intron 1 of 13).13	1253	NM_001291465	101060389		NM_001123390	ENSG00000274419	TBC1D3D	PRC17|TBC1D3|TBC1D3A|TBC1D3H	TBC1 domain family member 3D	protein-coding
28782	chr10	62058401	62058800	+	0	NA	intron (NM_001244638, intron 3 of 6)	intron (NM_001244638, intron 3 of 6)	9243	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
95801	chr17	38726801	38727100	+	0	NA	3' UTR (NM_005937, exon 20 of 20)	3' UTR (NM_005937, exon 20 of 20)	-3391	NM_001136498	284106		NM_001136498	ENSG00000277972	CISD3	MiNT|Miner2	CDGSH iron sulfur domain 3	protein-coding
91809	chr17	7044771	7044930	+	0	NA	promoter-TSS (NM_153357)	promoter-TSS (NM_153357)	-758	NM_001370549	162515		NM_153357	ENSG00000174326	SLC16A11	MCT 11|MCT11	solute carrier family 16 member 11	protein-coding
209380	chr7	76306501	76307130	+	0	NA	Intergenic	AluSx1|SINE|Alu	4142	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
215912	chr8	8180101	8180300	+	0	NA	intron (NR_147089, intron 2 of 3)	LTR2C|LTR|ERV1	47303	NR_147089	105379219		NR_147089		FAM85B	lncRNA-HEIM	family with sequence similarity 85 member B	ncRNA
200431	chr6	135013221	135013480	+	0	NA	intron (NM_001363686, intron 4 of 18)	intron (NM_001363686, intron 4 of 18)	-33918	NR_037435	100500880		NR_037435	ENSG00000283409	MIR3662	mir-3662	microRNA 3662	ncRNA
152036	chr22	19477251	19478000	+	0	NA	intron (NM_005659, intron 1 of 11)	L1MB2|LINE|L1	1568	NM_005659	7353		NM_005659	ENSG00000070010	UFD1	UFD1L	ubiquitin recognition factor in ER associated degradation 1	protein-coding
36604	chr11	6740651	6741280	+	0	NA	Intergenic	Intergenic	-19086	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
129748	chr2	70981051	70981350	+	0	NA	intron (NM_001115116, intron 3 of 5)	L2a|LINE|L2	2570	NM_024933	79998		NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
132608	chr2	108594001	108594480	+	0	NA	intron (NM_001193488, intron 1 of 9)	intron (NM_001193488, intron 1 of 9)	5934	NM_004987	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
135761	chr2	169591771	169592630	+	0	NA	intron (NM_004792, intron 1 of 13)	intron (NM_004792, intron 1 of 13)	7849	NM_004792	9360		NM_004792	ENSG00000138398	PPIG	CARS-Cyp|CYP|SCAF10|SRCyp	peptidylprolyl isomerase G	protein-coding
187584	chr5	142824121	142824680	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	44510	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
182266	chr5	57200801	57201200	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluSx|SINE|Alu	-13074	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
20545	chr1	198700951	198701750	+	0	NA	intron (NM_002838, intron 5 of 32)	intron (NM_002838, intron 5 of 32)	62310	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
177741	chr4	122493201	122493550	+	0	NA	Intergenic	L1PA3|LINE|L1	-36650	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
170329	chr3	184377451	184378280	+	0	NA	intron (NM_001290028, intron 1 of 5)	intron (NM_001290028, intron 1 of 5)	342	NM_000460	7066		NM_000460	ENSG00000090534	THPO	CAMT2|MGDF|MKCSF|ML|MPLLG|THC9|THCYT1|TPO	thrombopoietin	protein-coding
160727	chr3	32438921	32439650	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	47432	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
215283	chr7	157138351	157141330	+	0	NA	intron (NM_014671, intron 1 of 22)	intron (NM_014671, intron 1 of 22)	914	NM_014671	9690		NM_014671	ENSG00000009335	UBE3C	HECTH2|NDSMBA|NEDSMBA|RAUL	ubiquitin protein ligase E3C	protein-coding
202890	chr6	159983171	159984250	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	14628	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
1216	chr1	2265851	2266650	+	0	NA	intron (NM_003036, intron 1 of 6)	L1MC4|LINE|L1	37931	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
95108	chr17	34843771	34843930	+	0	NA	Intergenic	MER74A|LTR|ERVL	117610	NM_006584	10693		NM_006584	ENSG00000132141	CCT6B	CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303	chaperonin containing TCP1 subunit 6B	protein-coding
218208	chr8	42016001	42016200	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-35650	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
95460	chr17	36182701	36183500	+	0	NA	Intergenic	CpG	-6476	NM_001001417	414059		NM_001001417	ENSG00000274808	TBC1D3B	PRC17|TBC1D3I|TBC1D3L	TBC1 domain family member 3B	protein-coding
239039	chrY	7102751	7103050	+	0	NA	Intergenic	AluJr|SINE|Alu	-171072	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
121773	chr19	47768501	47768900	+	0	NA	non-coding (NR_132382, exon 1 of 3)	non-coding (NR_132382, exon 1 of 3)	140	NR_132382	106144593		NR_132382	ENSG00000269656	NOP53-AS1	GLTSCR2-AS1	NOP53 antisense RNA 1	ncRNA
176151	chr4	83213821	83214080	+	0	NA	Intergenic	MER30|DNA|hAT-Charlie	70848	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
109037	chr18	79738151	79738450	+	0	NA	intron (NM_004715, intron 12 of 12)	intron (NM_004715, intron 12 of 12)	56870	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
6791	chr1	30782101	30783600	+	0	NA	Intergenic	Intergenic	-25076	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
111971	chr19	4863721	4864380	+	0	NA	intron (NM_005817, intron 1 of 7)	AluSz|SINE|Alu	3617	NM_001164194	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
127645	chr2	43149051	43150250	+	0	NA	Intergenic	Intergenic	-47205	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
76096	chr15	72493871	72494050	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	19630	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
226937	chr9	79614051	79614350	+	0	NA	intron (NM_001351563, intron 5 of 17)	intron (NM_001351563, intron 5 of 17)	41023	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
193404	chr6	30438671	30438830	+	0	NA	Intergenic	Intergenic	-50759	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
58219	chr12	127559601	127560000	+	0	NA	Intergenic	Intergenic	76667	NR_120451	101927637		NR_120451	ENSG00000256022	LINC02411	-	long intergenic non-protein coding RNA 2411	ncRNA
87381	chr16	70450971	70451330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3445	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
68356	chr14	77712271	77712730	+	0	NA	intron (NR_052025, intron 3 of 4)	AluSx1|SINE|Alu	4397	NM_031210	81892		NM_031210	ENSG00000119705	SLIRP	C14orf156|DC50|PD04872	SRA stem-loop interacting RNA binding protein	protein-coding
67497	chr14	70939521	70940180	+	0	NA	intron (NM_014982, intron 1 of 35)	L1PA5|LINE|L1	32391	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
101518	chr17	67827921	67828630	+	0	NA	intron (NM_182641, intron 1 of 27)	LFSINE_Vert|SINE|tRNA	2772	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
31000	chr10	88383351	88383450	+	0	NA	intron (NM_018363, intron 4 of 6)	Cheshire|DNA|hAT-Charlie	199918	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
233740	chrX	1380351	1380850	+	0	NA	intron (NM_001267713, intron 8 of 9).2	G-rich|Low_complexity|Low_complexity	11513	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
98786	chr17	48143371	48143950	+	0	NA	intron (NM_001075099, intron 11 of 12)	intron (NM_001075099, intron 11 of 12)	12851	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
28991	chr10	63268801	63269730	+	0	NA	promoter-TSS (NM_001318153)	promoter-TSS (NM_001318153)	-22	NM_001322254	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
94120	chr17	28076021	28076480	+	0	NA	intron (NM_016231, intron 1 of 10)	MLT1A0|LTR|ERVL-MaLR	33573	NM_016231	51701		NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding
208924	chr7	74065801	74066300	+	0	NA	intron (NM_000501, intron 31 of 32)	intron (NM_000501, intron 31 of 32)	-17754	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
155142	chr22	37660301	37660500	+	0	NA	intron (NM_020315, intron 1 of 1)	intron (NM_020315, intron 1 of 1)	1677	NM_020315	57026		NM_020315	ENSG00000241360	PDXP	CIN|PLP|dJ37E16.5	pyridoxal phosphatase	protein-coding
72465	chr15	32434951	32435200	+	0	NA	promoter-TSS (NR_026858).3	promoter-TSS (NR_026858).3	-26	NR_026858	89838		NR_026858	ENSG00000291023	ULK4P1	D-X|FAM7A1	ULK4 pseudogene 1	pseudo
131923	chr2	98908971	98909330	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	27075	NM_207362	343990		NM_207362	ENSG00000196872	CRACDL	C2orf55|KIAA1211L	CRACD like	protein-coding
209234	chr7	75743351	75743850	+	0	NA	Intergenic	Intergenic	-4659	NM_005338	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
52617	chr12	56257571	56258950	+	0	NA	exon (NM_173595, exon 1 of 28)	exon (NM_173595, exon 1 of 28)	124	NM_173595	283373		NM_173595	ENSG00000139645	ANKRD52	ANKRD33	ankyrin repeat domain 52	protein-coding
121674	chr19	47504071	47504230	+	0	NA	intron (NR_038456, intron 1 of 11)	AluJb|SINE|Alu	10913	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
138222	chr2	202754651	202754950	+	0	NA	intron (NM_173511, intron 4 of 7)	AluSx4|SINE|Alu	74434	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
37235	chr11	14518121	14519100	+	0	NA	intron (NM_148976, intron 3 of 10)	L1MA9|LINE|L1	1776	NM_002786	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
108588	chr18	75208701	75209990	+	0	NA	promoter-TSS (NM_175907)	promoter-TSS (NM_175907)	-206	NM_175907	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
4710	chr1	23169801	23170200	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-1142	NM_001142546	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
105503	chr17	83097601	83098180	+	0	NA	Intergenic	Intergenic	16744	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
139932	chr2	230782771	230783030	+	0	NA	intron (NM_016289, intron 2 of 8)	AluY|SINE|Alu	69352	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
80325	chr16	2432301	2432500	+	0	NA	intron (NM_001323538, intron 2 of 15)	intron (NM_001323538, intron 2 of 15)	2953	NM_001323538	899		NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1|FTDALS5	cyclin F	protein-coding
115019	chr19	14080901	14082230	+	0	NA	TTS (NM_001277378)	TTS (NM_001277378)	4218	NM_001277378	646457		NM_001277378	ENSG00000188032	C19orf67	-	chromosome 19 open reading frame 67	protein-coding
80473	chr16	2700371	2700730	+	0	NA	intron (NM_018992, intron 4 of 5)	intron (NM_018992, intron 4 of 5)	18027	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
155099	chr22	37591501	37591700	+	0	NA	Intergenic	AluSg7|SINE|Alu	-11513	NM_006498	3957		NM_006498	ENSG00000100079	LGALS2	HL14	galectin 2	protein-coding
212622	chr7	129267251	129267350	+	0	NA	intron (NM_001130720, intron 1 of 16)	intron (NM_001130720, intron 1 of 16)	42270	NM_001130720	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
72490	chr15	32629871	32630030	+	0	NA	intron (NM_199357, intron 8 of 10)	(GT)n|Simple_repeat|Simple_repeat	-11663	NM_003020	6447		NM_003020	ENSG00000166922	SCG5	7B2|P7B2|SGNE1|SgV	secretogranin V	protein-coding
140037	chr2	231190701	231190980	+	0	NA	Intergenic	Intergenic	-7791	NM_001352759	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
79584	chr16	1003701	1005050	+	0	NA	Intergenic	Intergenic	22605	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
109210	chr19	463451	463750	+	0	NA	3' UTR (NM_001385600, exon 3 of 3)	3' UTR (NM_001385600, exon 3 of 3)	-2604	NM_012435	25759		NM_012435	ENSG00000129946	SHC2	SCK|SHCB|SLI	SHC adaptor protein 2	protein-coding
159414	chr3	13494421	13495280	+	0	NA	intron (NM_001330636, intron 3 of 6)	intron (NM_001330636, intron 3 of 6)	14544	NM_001136041	79885		NM_024827	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
208199	chr7	65037051	65037150	+	0	NA	Intergenic	L4_B_Mam|LINE|RTE-X	-1254	NR_033416	643180		NR_033416	ENSG00000290860	CCT6P3	CCT6-3P	chaperonin containing TCP1 subunit 6 pseudogene 3	pseudo
146697	chr20	50545921	50546250	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	35702	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
119494	chr19	40464201	40464720	+	0	NA	intron (NM_000713, intron 1 of 4)	intron (NM_000713, intron 1 of 4)	1285	NM_000713	645		NM_000713	ENSG00000090013	BLVRB	BVRB|FLR|HEL-S-10|SDR43U1	biliverdin reductase B	protein-coding
138197	chr2	202668551	202669050	+	0	NA	intron (NM_173511, intron 1 of 7)	MIRb|SINE|MIR	33831	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
47728	chr12	6466671	6467100	+	0	NA	intron (NM_016830, intron 1 of 4)	THE1A|LTR|ERVL-MaLR	3792	NR_123717	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
56744	chr12	120136651	120136950	+	0	NA	intron (NM_006836, intron 50 of 57)	intron (NM_006836, intron 50 of 57)	18699	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
111308	chr19	3608821	3609300	+	0	NA	intron (NR_038865, intron 1 of 3)	intron (NR_038865, intron 1 of 3)	1813	NR_038865	404665		NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	ncRNA
75387	chr15	65740571	65741000	+	0	NA	intron (NM_001376919, intron 5 of 31)	AluJo|SINE|Alu	-21453	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
42519	chr11	70425021	70425280	+	0	NA	intron (NM_005231, intron 12 of 17)	intron (NM_005231, intron 12 of 17)	26621	NM_005231	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
32587	chr10	103491921	103492430	+	0	NA	intron (NR_120675, intron 3 of 3)	intron (NR_120675, intron 3 of 3)	-1530	NM_004210	9148		NM_004210	ENSG00000107954	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding
53033	chr12	57606801	57607000	+	0	NA	exon (NM_001286246, exon 4 of 6)	exon (NM_001286246, exon 4 of 6)	2076	NM_178502	196403		NM_178502	ENSG00000178498	DTX3	RNF154|deltex3	deltex E3 ubiquitin ligase 3	protein-coding
68198	chr14	76813921	76814280	+	0	NA	Intergenic	Intergenic	-1218	NM_001370747	23357		NM_015305	ENSG00000013523	ANGEL1	Ccr4e|KIAA0759	angel homolog 1	protein-coding
167876	chr3	135005421	135005630	+	0	NA	intron (NM_004441, intron 3 of 15)	L1HS|LINE|L1	210265	NM_004441	2047		NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
144833	chr20	36858601	36858800	+	0	NA	intron (NM_080627, intron 1 of 14)	MIRc|SINE|MIR	1173	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
157683	chr22	46295371	46295850	+	0	NA	non-coding (NR_024009, exon 1 of 1)	non-coding (NR_024009, exon 1 of 1)	1050	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
222041	chr8	130242471	130243380	+	0	NA	intron (NM_001362924, intron 3 of 30)	MER8|DNA|TcMar-Tigger	53608	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
208042	chr7	55964021	55965200	+	0	NA	promoter-TSS (NM_001483)	promoter-TSS (NM_001483)	25	NM_001202469	2631		NM_001483	ENSG00000146729	NIPSNAP2	GBAS	nipsnap homolog 2	protein-coding
64349	chr14	24058071	24059000	+	0	NA	intron (NM_138360, intron 17 of 39).2	intron (NM_138360, intron 17 of 39).2	6526	NM_138360	90668		NM_138360	ENSG00000186648	CARMIL3	C14orf121|LRRC16B|crml-1	capping protein regulator and myosin 1 linker 3	protein-coding
2781	chr1	10835601	10836130	+	0	NA	Intergenic	CpG	-39219	NM_017766	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
193172	chr6	29711301	29712000	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-11690	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
70853	chr14	103705821	103706380	+	0	NA	intron (NM_001371232, intron 6 of 9)	intron (NM_001371232, intron 6 of 9)	9351	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
162428	chr3	48425451	48425950	+	0	NA	intron (NM_001130082, intron 1 of 37)	intron (NM_001130082, intron 1 of 37)	3763	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
179850	chr5	506321	506580	+	0	NA	intron (NM_001284351, intron 1 of 16)	intron (NM_001284351, intron 1 of 16)	17999	NM_001284351	6550		NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
65376	chr14	50669551	50670530	+	0	NA	Intergenic	L2a|LINE|L2	-1734	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
16278	chr1	154125451	154125550	+	0	NA	intron (NM_207308, intron 10 of 39)	AluJb|SINE|Alu	-20908	NR_049883	100847024		NR_049883	ENSG00000263987	MIR5698	-	microRNA 5698	ncRNA
115313	chr19	14783771	14784000	+	0	NA	Intergenic	Intergenic	-5325	NM_013447	30817		NM_013447	ENSG00000127507	ADGRE2	CD312|CD97|EMR2|VBU	adhesion G protein-coupled receptor E2	protein-coding
21444	chr1	205458201	205458400	+	0	NA	intron (NR_148934, intron 2 of 2)	L2b|LINE|L2	-2214	NR_103783								
155393	chr22	38320621	38320880	+	0	NA	intron (NM_001289912, intron 5 of 14)	AluJo|SINE|Alu	-2666	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
92642	chr17	10156871	10157800	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	41271	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
68405	chr14	80978321	80979080	+	0	NA	intron (NM_001142626, intron 1 of 8)	ERV3-16A3_LTR|LTR|ERVL	23079	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
26150	chr10	14003301	14003900	+	0	NA	intron (NM_018027, intron 2 of 24)	intron (NM_018027, intron 2 of 24)	4950	NM_001318336	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
68891	chr14	91335471	91335630	+	0	NA	intron (NM_001080414, intron 10 of 29)	L2b|LINE|L2	-81670	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
19256	chr1	172682701	172683100	+	0	NA	Intergenic	Intergenic	23797	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
34897	chr11	385441	385630	+	0	NA	Intergenic	Intergenic	-7061	NM_001303029	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
4309	chr1	20248801	20249700	+	0	NA	Intergenic	L2c|LINE|L2	6155	NR_147205	105376827		NR_147205	ENSG00000228105	LINC01757	-	long intergenic non-protein coding RNA 1757	ncRNA
157784	chr22	46761851	46763530	+	0	NA	promoter-TSS (NM_001284303)	promoter-TSS (NM_001284303)	40	NM_014346	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
140210	chr2	231709101	231709800	+	0	NA	intron (NM_002823, intron 1 of 4)	CpG-17106	925	NM_002823	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
77755	chr15	85756351	85756650	+	0	NA	intron (NR_120366, intron 3 of 5)	intron (NR_120366, intron 3 of 5)	2225	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
184130	chr5	94621451	94622280	+	0	NA	intron (NM_032290, intron 1 of 20)	intron (NM_032290, intron 1 of 20)	3196	NM_032290	84250		NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding
231322	chr9	130120321	130120580	+	0	NA	intron (NM_001136557, intron 16 of 19)	intron (NM_001136557, intron 16 of 19)	23769	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
9572	chr1	51863021	51863780	+	0	NA	intron (NM_002525, intron 1 of 32)	AluSz6|SINE|Alu	14640	NM_001242361	4898		NM_002525	ENSG00000078618	NRDC	NRD1|hNRD1|hNRD2	nardilysin convertase	protein-coding
165985	chr3	108086721	108087000	+	0	NA	intron (NM_198793, intron 1 of 8)	intron (NM_198793, intron 1 of 8)	4171	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
174545	chr4	40203901	40204850	+	0	NA	intron (NM_001278362, intron 2 of 3)	intron (NM_001278362, intron 2 of 3)	7344	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
239333	chrY	19076771	19076930	+	0	NA	promoter-TSS (NR_158640)	promoter-TSS (NR_158640)	697	NR_125735	83869		NM_031932	ENSG00000176728	TTTY14	CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14	testis expressed transcript, Y-linked 14	ncRNA
96227	chr17	39783021	39783480	+	0	NA	intron (NM_001284514, intron 6 of 8)	intron (NM_001284514, intron 6 of 8)	-5025	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
182298	chr5	58453471	58453930	+	0	NA	TTS (NM_006622)	TTS (NM_006622)	6386	NM_006622	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
60412	chr13	40973421	40973950	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	8597	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
172325	chr4	1682501	1682700	+	0	NA	intron (NM_001174070, intron 1 of 4)	intron (NM_001174070, intron 1 of 4)	1391	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
47183	chr12	799101	800150	+	0	NA	intron (NM_018979, intron 1 of 27)	AluJr|SINE|Alu	46702	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
238947	chrX	154918021	154918450	+	0	NA	intron (NM_000132, intron 14 of 25)	L1MA4|LINE|L1	-30777	NR_036259	100422985		NR_036259	ENSG00000221190	MIR1184-2	-	microRNA 1184-2	ncRNA
126278	chr2	27196151	27196650	+	0	NA	Intergenic	Charlie9|DNA|hAT-Charlie	15868	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
170023	chr3	180987621	180988030	+	0	NA	intron (NM_145261, intron 3 of 5)	intron (NM_145261, intron 3 of 5)	1693	NM_001190233	131118		NM_145261	ENSG00000205981	DNAJC19	PAM18|TIM14|TIMM14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding
108949	chr18	79507071	79508200	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-71647	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
161453	chr3	42148671	42148830	+	0	NA	promoter-TSS (NM_001265610)	promoter-TSS (NM_001265610)	-485	NM_001349249	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
147135	chr20	54222371	54222530	+	0	NA	Intergenic	Intergenic	14363	NM_002623	5203		NM_002623	ENSG00000101132	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
110291	chr19	1830101	1830300	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	8111	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
22646	chr1	223725501	223725700	+	0	NA	intron (NM_001748, intron 2 of 20)	intron (NM_001748, intron 2 of 20)	13061	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
150211	chr21	39387321	39388030	+	0	NA	promoter-TSS (NR_146616)	promoter-TSS (NR_146616)	-88	NM_001146218	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
33548	chr10	119299671	119300350	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	-77962	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
179034	chr4	165210501	165210700	+	0	NA	intron (NM_001161522, intron 1 of 13)	intron (NM_001161522, intron 1 of 13)	581	NM_001161522	11275		NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
193229	chr6	29887321	29891150	+	0	NA	intron (NR_001434, intron 3 of 7).4	intron (NR_001434, intron 3 of 7).4	1662	NR_001434	3136		NR_001434		HLA-H	HLAHP	major histocompatibility complex, class I, H (pseudogene)	pseudo
2552	chr1	9733851	9734780	+	0	NA	intron (NM_014944, intron 13 of 17)	AluSx1|SINE|Alu	42848	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
215859	chr8	7397721	7398080	+	0	NA	Intergenic	Intergenic	-12342	NM_001164457	100131980		NM_001164457	ENSG00000215372	ZNF705G	-	zinc finger protein 705G	protein-coding
87689	chr16	74658901	74659100	+	0	NA	intron (NM_001370540, intron 3 of 13)	AluSz6|SINE|Alu	7877	NM_018124	55159		NM_018124	ENSG00000168411	RFWD3	FANCW|RNF201	ring finger and WD repeat domain 3	protein-coding
52450	chr12	55934471	55935150	+	0	NA	intron (NM_001351040, intron 1 of 22)	intron (NM_001351040, intron 1 of 22)	-1024	NM_001351035	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
230324	chr9	127974771	127975360	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	5924	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
122480	chr19	49555621	49557290	+	0	NA	intron (NM_001270960, intron 7 of 8)	CpG-14929	24101	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
106986	chr18	32029051	32030230	+	0	NA	intron (NM_017831, intron 1 of 5)	intron (NM_017831, intron 1 of 5)	10815	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
127308	chr2	38761921	38762180	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10556	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
20458	chr1	198558321	198559200	+	0	NA	Intergenic	Intergenic	-17815	NM_133326	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
179301	chr4	177339351	177340180	+	0	NA	intron (NM_018248, intron 4 of 9)	intron (NM_018248, intron 4 of 9)	29891	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
128693	chr2	61532201	61532400	+	0	NA	intron (NM_003400, intron 2 of 24)	AluY|SINE|Alu	6056	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
189058	chr5	170254051	170254980	+	0	NA	intron (NM_005565, intron 17 of 20)	intron (NM_005565, intron 17 of 20)	21509	NM_001305393	133874		NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
212457	chr7	128428221	128428480	+	0	NA	Intergenic	(ATAC)n|Simple_repeat|Simple_repeat	-18368	NM_183243	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
59078	chr13	20907001	20907350	+	0	NA	Intergenic	AluSz|SINE|Alu	-4401	NM_022459	64328		NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
104824	chr17	81813871	81814030	+	0	NA	TTS (NM_000160)	TTS (NM_000160)	9800	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
140128	chr2	231533051	231534200	+	0	NA	Intergenic	MIRb|SINE|MIR	-3180	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
33306	chr10	114824221	114824630	+	0	NA	intron (NM_001135051, intron 1 of 16)	intron (NM_001135051, intron 1 of 16)	2645	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
56056	chr12	110560171	110560530	+	0	NA	intron (NM_139283, intron 1 of 5)	AluJr|SINE|Alu	22968	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
183805	chr5	82356621	82357730	+	0	NA	Intergenic	Intergenic	77713	NM_001017971	92270		NM_001017971		ATP6AP1L	-	ATPase H+ transporting accessory protein 1 like (pseudogene)	pseudo
185146	chr5	119317921	119318680	+	0	NA	intron (NM_001286815, intron 2 of 2)	AluJb|SINE|Alu	-14875	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
10711	chr1	75724071	75725180	+	0	NA	promoter-TSS (NM_000016)	promoter-TSS (NM_000016)	-84	NM_000016	34		NM_000016	ENSG00000117054	ACADM	ACAD1|MCAD|MCADH	acyl-CoA dehydrogenase medium chain	protein-coding
155077	chr22	37558701	37559250	+	0	NA	Intergenic	Intergenic	-1505	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
152262	chr22	20247271	20247830	+	0	NA	intron (NM_023004, intron 1 of 1)	intron (NM_023004, intron 1 of 1)	1661	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
134525	chr2	143553371	143553530	+	0	NA	intron (NM_018460, intron 10 of 13)	intron (NM_018460, intron 10 of 13)	-383617	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
11420	chr1	89724621	89725230	+	0	NA	Intergenic	Intergenic	91805	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
8534	chr1	41019251	41019550	+	0	NA	intron (NR_037868, intron 1 of 3)	intron (NR_037868, intron 1 of 3)	2325	NM_001377532	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
48976	chr12	13001101	13002000	+	0	NA	non-coding (NR_002774, exon 1 of 1)	non-coding (NR_002774, exon 1 of 1)	1108	NR_002774	93164		NR_002774	ENSG00000293237	HTR7P1	HTR7P	5-hydroxytryptamine receptor 7 pseudogene 1	pseudo
58707	chr12	132566321	132566780	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-15447	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
37058	chr11	12242171	12242530	+	0	NA	exon (NM_001346292, exon 18 of 27)	exon (NM_001346292, exon 18 of 27)	-44550	NM_032867	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
183661	chr5	80310101	80310300	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-9722	NR_004845	644936		NR_004845		LOC644936	-	actin beta pseudogene	pseudo
182032	chr5	55634001	55634200	+	0	NA	intron (NM_173514, intron 13 of 15)	MER5C1|DNA|hAT-Charlie	58953	NM_001258286	153129		NM_173514	ENSG00000177058	SLC38A9	SNAT9|URLC11	solute carrier family 38 member 9	protein-coding
205470	chr7	17304101	17304330	+	0	NA	intron (NM_001621, intron 1 of 10)	HAL1|LINE|L1	5563	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
130043	chr2	74425301	74425500	+	0	NA	TTS (NM_001015055)	TTS (NM_001015055)	3670	NM_032118	84058		NM_032118	ENSG00000005448	WDR54	-	WD repeat domain 54	protein-coding
148332	chr20	63781801	63783080	+	0	NA	intron (NM_025224, intron 2 of 4)	MLT1D|LTR|ERVL-MaLR	23063	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
229086	chr9	114365901	114367400	+	0	NA	intron (NM_001317952, intron 5 of 20)	L1MB8|LINE|L1	21332	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
39486	chr11	61012751	61013200	+	0	NA	intron (NM_006725, intron 6 of 12)	L2c|LINE|L2	41295	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
132345	chr2	105675171	105675330	+	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-64691	NR_038891	285000		NR_038891		LINC02946	RMEL1	long intergenic non-protein coding RNA 2946	ncRNA
5742	chr1	26470021	26471000	+	0	NA	3' UTR (NM_001319959, exon 9 of 9)	3' UTR (NM_001319959, exon 9 of 9)	-1930	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
8706	chr1	42314401	42314800	+	0	NA	intron (NM_001198850, intron 1 of 12)	intron (NM_001198850, intron 1 of 12)	20355	NM_001198851	22887		NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
23201	chr1	227481501	227481800	+	0	NA	Intergenic	Intergenic	-81906	NM_001367909	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
109128	chr18	80158901	80159100	+	0	NA	3' UTR (NM_032510, exon 3 of 3)	3' UTR (NM_032510, exon 3 of 3)	11076	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
132870	chr2	111118931	111119880	+	0	NA	TTS (NM_001142807)	TTS (NM_001142807)	-1509	NM_138621	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
128794	chr2	62309221	62310280	+	0	NA	Intergenic	LTR103_Mam|LTR|ERV1?	94229	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
30664	chr10	80487351	80489180	+	0	NA	intron (NM_001351272, intron 2 of 9)	intron (NM_001351272, intron 2 of 9)	20024	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
28586	chr10	51960471	51960630	+	0	NA	intron (NM_001098512, intron 5 of 17)	intron (NM_001098512, intron 5 of 17)	-86206	NM_001374781	5592		NM_006258	ENSG00000185532	PRKG1	AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha	protein kinase cGMP-dependent 1	protein-coding
4083	chr1	19088801	19089200	+	0	NA	intron (NM_020765, intron 97 of 105)	intron (NM_020765, intron 97 of 105)	121266	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
204849	chr7	5782951	5783500	+	0	NA	Intergenic	AluSx|SINE|Alu	-1562	NM_207116	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
134847	chr2	148658021	148658550	+	0	NA	intron (NM_015630, intron 1 of 13)	Tigger17a|DNA|TcMar-Tigger	13534	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
43218	chr11	75435751	75436450	+	0	NA	intron (NM_030792, intron 16 of 16)	L2b|LINE|L2	-5471	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
57760	chr12	122980001	122981600	+	0	NA	TTS (NM_001304838)	TTS (NM_001304838)	740	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
84462	chr16	30449601	30450230	+	0	NA	Intergenic	Intergenic	-4041	NM_012248	22928		NM_012248	ENSG00000179918	SEPHS2	SPS2	selenophosphate synthetase 2	protein-coding
49890	chr12	39372601	39373400	+	0	NA	intron (NM_001378440, intron 1 of 36)	L2c|LINE|L2	70120	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
97843	chr17	44961921	44962380	+	0	NA	intron (NM_006688, intron 1 of 1)	intron (NM_006688, intron 1 of 1)	6153	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
169637	chr3	171327121	171327880	+	0	NA	intron (NM_001161560, intron 2 of 31)	MLT1J2|LTR|ERVL-MaLR	132905	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
54022	chr12	75495921	75496380	+	0	NA	3' UTR (NM_007043, exon 10 of 10)	3' UTR (NM_007043, exon 10 of 10)	15395	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
235256	chrX	41694701	41695030	+	0	NA	intron (NM_005300, intron 2 of 2)	intron (NM_005300, intron 2 of 2)	5892	NM_001097579	2857		NM_005300	ENSG00000171659	GPR34	LPS1|LYPSR1	G protein-coupled receptor 34	protein-coding
167439	chr3	129067601	129068200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7121	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
172416	chr4	1827921	1828830	+	0	NA	intron (NM_012318, intron 6 of 13)	SVA_F|Retroposon|SVA	27781	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
170590	chr3	186901221	186901480	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-29176	NM_173217	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
45956	chr11	121418571	121419230	+	0	NA	Intergenic	MER66D|LTR|ERV1	-33414	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
1176	chr1	2224901	2225500	+	0	NA	Intergenic	Intergenic	-3119	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
120672	chr19	45103021	45103900	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	10281	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
194921	chr6	34887151	34888500	+	0	NA	exon (NM_001270488, exon 1 of 4)	exon (NM_001270488, exon 1 of 4)	217	NM_005643	6882		NM_005643	ENSG00000064995	TAF11	MGC:15243|PRO2134|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding
117773	chr19	29710821	29711080	+	0	NA	intron (NM_001256047, intron 1 of 2)	intron (NM_001256047, intron 1 of 2)	4106	NM_001282929	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
200223	chr6	131459921	131460280	+	0	NA	Intergenic	Intergenic	-113126	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
57795	chr12	123079071	123079430	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-2134	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
200347	chr6	133973071	133973680	+	0	NA	intron (NM_004865, intron 1 of 6)	intron (NM_004865, intron 1 of 6)	20151	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
137721	chr2	197701151	197701450	+	0	NA	Intergenic	L1PBa|LINE|L1	-4069	NM_138395	92935		NM_138395	ENSG00000247626	MARS2	COXPD25|MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
130349	chr2	85007501	85007700	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	36439	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
62474	chr13	99380421	99381630	+	0	NA	intron (NR_026644, intron 8 of 8)	intron (NR_026644, intron 8 of 8)	24894	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
44494	chr11	105290321	105290530	+	0	NA	Intergenic	AluSc|SINE|Alu	-150656	NM_021571	59082		NM_021571	ENSG00000255501	CARD18	ICEBERG|UNQ5804|pseudo-ICE	caspase recruitment domain family member 18	protein-coding
49865	chr12	36877751	36877850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1438974	NM_001308340	144245		NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10 alpha-1,2-glucosyltransferase B	protein-coding
33937	chr10	124615821	124616980	+	0	NA	Intergenic	Intergenic	-87628	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
210758	chr7	100685151	100685700	+	0	NA	exon (NM_001375766, exon 14 of 28)	exon (NM_001375766, exon 14 of 28)	8825	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
143789	chr20	32451401	32451950	+	0	NA	intron (NM_001351680, intron 7 of 8)	intron (NM_001351680, intron 7 of 8)	31815	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
171943	chr4	884871	885030	+	0	NA	intron (NM_001318134, intron 8 of 24)	CpG	47366	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
143617	chr20	31723201	31724730	+	0	NA	promoter-TSS (NM_001317921)	promoter-TSS (NM_001317921)	-2	NM_001317921	598		NM_001191	ENSG00000171552	BCL2L1	BCL-XL/S|BCL2L|BCLX|Bcl-X|PPP1R52	BCL2 like 1	protein-coding
225833	chr9	37964601	37965000	+	0	NA	intron (NM_003028, intron 3 of 5)	MIRb|SINE|MIR	-60447	NR_024872	92014		NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
208177	chr7	64774421	64774680	+	0	NA	Intergenic	L1MA9|LINE|L1	-19878	NM_001367574	7697		NM_006524	ENSG00000197008	ZNF138	pHZ-32	zinc finger protein 138	protein-coding
146679	chr20	50518451	50518850	+	0	NA	intron (NM_001278618, intron 1 of 8)	(TTG)n|Simple_repeat|Simple_repeat	8267	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
98582	chr17	47727071	47727700	+	0	NA	Intergenic	Intergenic	-5851	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
71687	chr15	20104301	20104930	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-178129	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
33455	chr10	119044521	119044780	+	0	NA	intron (NM_003750, intron 17 of 21)	AluSc8|SINE|Alu	14936	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
138179	chr2	202648321	202648580	+	0	NA	intron (NM_173511, intron 1 of 7)	AluSx|SINE|Alu	13481	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
193047	chr6	28589151	28589850	+	0	NA	intron (NM_001329616, intron 1 of 5)	intron (NM_001329616, intron 1 of 5)	-2202	NM_052923	114821		NM_052923	ENSG00000232040	SCAND3	Buster4|FAM200D|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
50893	chr12	49269371	49270230	+	0	NA	intron (NM_032704, intron 2 of 3)	(CCT)n|Simple_repeat|Simple_repeat	4718	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
118448	chr19	35864671	35865100	+	0	NA	intron (NM_032123, intron 14 of 15)	intron (NM_032123, intron 14 of 15)	-3560	NM_005166	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
127971	chr2	46702801	46703000	+	0	NA	intron (NM_144949, intron 1 of 1)	intron (NM_144949, intron 1 of 1)	3605	NM_144949	9655		NM_014011	ENSG00000171150	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
17987	chr1	160515351	160515450	+	0	NA	intron (NM_001184714, intron 1 of 7)	L1PA10|LINE|L1	7855	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
111645	chr19	4185521	4185780	+	0	NA	intron (NM_133475, intron 1 of 21)	intron (NM_133475, intron 1 of 21)	2296	NM_133475	170961		NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
179978	chr5	860701	861480	+	0	NA	Intergenic	Intergenic	-10104	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
50922	chr12	49334221	49335430	+	0	NA	intron (NM_001008223, intron 1 of 1)	intron (NM_001008223, intron 1 of 1)	2363	NM_001008223	338761		NM_001008223	ENSG00000186897	C1QL4	C1QTNF11|CTRP11	complement C1q like 4	protein-coding
61676	chr13	73991621	73991880	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	142179	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
114026	chr19	10921701	10922300	+	0	NA	TTS (NM_001321440)	TTS (NM_001321440)	6639	NM_024029	78992		NM_024029	ENSG00000130733	YIPF2	FinGER2|YIPFbeta3B|Yip5C	Yip1 domain family member 2	protein-coding
64641	chr14	31241871	31242430	+	0	NA	Intergenic	MER72|LTR|ERV1	-34357	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
38647	chr11	46369301	46370180	+	0	NA	intron (NM_001199268, intron 5 of 29)	intron (NM_001199268, intron 5 of 29)	-6662	NR_039837	100616368		NR_039837	ENSG00000264102	MIR4688	mir-4688	microRNA 4688	ncRNA
88535	chr16	85422951	85423250	+	0	NA	Intergenic	Intergenic	-116775	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
117674	chr19	24088801	24089180	+	0	NA	intron (NM_001278678, intron 1 of 1)	AluSp|SINE|Alu	1803	NM_203282	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
98318	chr17	46255001	46255430	+	0	NA	Intergenic	AluJb|SINE|Alu	-29848	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
85122	chr16	34582021	34582430	+	0	NA	Intergenic	Intergenic	-200745	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
219862	chr8	85147471	85147700	+	0	NA	Intergenic	L1M4b|LINE|L1	29456	NR_134311	102723322		NR_134311	ENSG00000260493	E2F5-DT	-	E2F5 divergent transcript	ncRNA
90745	chr17	2036201	2036980	+	0	NA	non-coding (NR_144476, exon 5 of 13)	non-coding (NR_144476, exon 5 of 13)	-5432	NM_080822	124641		NM_080822	ENSG00000262664	OVCA2	-	OVCA2 serine hydrolase domain containing	protein-coding
32249	chr10	101858251	101858350	+	0	NA	intron (NM_024541, intron 24 of 25)	MIR|SINE|MIR	-14380	NM_173197	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
178242	chr4	143399421	143399680	+	0	NA	intron (NM_002039, intron 1 of 9)	intron (NM_002039, intron 1 of 9)	56090	NR_036091	100423017		NR_036091	ENSG00000265623	MIR3139	-	microRNA 3139	ncRNA
161188	chr3	39136421	39137050	+	0	NA	intron (NR_159496, intron 23 of 28)	intron (NR_159496, intron 23 of 28)	-1471	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
126136	chr2	26144871	26145380	+	0	NA	Intergenic	Intergenic	-27963	NM_001168241	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
23886	chr1	234924851	234925180	+	0	NA	Intergenic	Intergenic	38984	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
39295	chr11	58578701	58579300	+	0	NA	promoter-TSS (NM_001143995)	promoter-TSS (NM_001143995)	-63	NM_001197051	80829		NM_053023	ENSG00000186660	ZFP91	DMS-8|DSM-8|DSM8|FKSG11|PZF|ZFP-91|ZNF757	ZFP91 zinc finger protein, atypical E3 ubiquitin ligase	protein-coding
226630	chr9	73183701	73184330	+	0	NA	Intergenic	L1MA7|LINE|L1	32150	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
94577	chr17	29674501	29674700	+	0	NA	intron (NM_001282131, intron 6 of 6)	intron (NM_001282131, intron 6 of 6)	-53177	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
238968	chrX	155263911	155265080	+	0	NA	promoter-TSS (NM_171998)	promoter-TSS (NM_171998)	-4	NM_171998	116442		NM_171998	ENSG00000155961	RAB39B	BGMR|MRX72|WSMN|WSN|XLID72	RAB39B, member RAS oncogene family	protein-coding
40468	chr11	64228721	64229380	+	0	NA	intron (NM_032344, intron 3 of 5)	MIR1_Amn|SINE|MIR	-1231	NM_005528	3338		NM_005528	ENSG00000110011	DNAJC4	DANJC4|HSPF2|MCG18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding
73624	chr15	44592921	44593580	+	0	NA	intron (NM_025137, intron 26 of 39)	AluJb|SINE|Alu	56103	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
40100	chr11	62801521	62802100	+	0	NA	exon (NM_001081491, exon 6 of 20)	exon (NM_001081491, exon 6 of 20)	3630	NM_001081491	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
69437	chr14	94144571	94144930	+	0	NA	Intergenic	LTR33|LTR|ERVL	-15146	NM_032036	83982		NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	interferon alpha inducible protein 27 like 2	protein-coding
15500	chr1	150462521	150463180	+	0	NA	intron (NM_015203, intron 9 of 10)	AluY|SINE|Alu	-24569	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
117120	chr19	19212551	19212850	+	0	NA	intron (NM_004386, intron 1 of 14)	intron (NM_004386, intron 1 of 14)	742	NM_004386	1463		NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
34698	chr10	133421901	133422300	+	0	NA	3' UTR (NM_001012508, exon 2 of 2)	3' UTR (NM_001012508, exon 2 of 2)	2517	NM_001012508	503542		NM_001012508	ENSG00000203772	SPRN	SHADOO|SHO|bA108K14.1	shadow of prion protein	protein-coding
168118	chr3	138830121	138830380	+	0	NA	intron (NM_006219, intron 1 of 23)	intron (NM_006219, intron 1 of 23)	4678	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
217626	chr8	30052371	30052800	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	30479	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
39260	chr11	57740001	57740200	+	0	NA	exon (NM_001347896, exon 8 of 8)	exon (NM_001347896, exon 8 of 8)	-1150	NM_001321335	280636		NM_170746	ENSG00000211450	SELENOH	C11orf31|C17orf10|SELH	selenoprotein H	protein-coding
150354	chr21	42183601	42184100	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-15839	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
60910	chr13	46173701	46174100	+	0	NA	intron (NM_002298, intron 1 of 15)	intron (NM_002298, intron 1 of 15)	8277	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
79543	chr16	902121	902380	+	0	NA	intron (NM_001352017, intron 5 of 11)	intron (NM_001352017, intron 5 of 11)	-18783	NR_110946	101929387		NR_110945	ENSG00000260439	LMF1-AS1	LA16c-366D3.1	LMF1 antisense RNA 1	ncRNA
214074	chr7	143399051	143399550	+	0	NA	exon (NM_005232, exon 5 of 18)	exon (NM_005232, exon 5 of 18)	-8513	NR_033897	285965		NR_033897	ENSG00000229153	EPHA1-AS1	-	EPHA1 antisense RNA 1	ncRNA
179586	chr4	185344251	185344550	+	0	NA	intron (NM_001378032, intron 13 of 19)	intron (NM_001378032, intron 13 of 19)	34598	NM_018409	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
93882	chr17	21119501	21120090	+	0	NA	Intergenic	Intergenic	-7133	NM_015510	25979		NM_015510	ENSG00000109016	DHRS7B	CGI-93|SDR32C1	dehydrogenase/reductase 7B	protein-coding
14528	chr1	144847571	144847730	+	0	NA	intron (NR_104189, intron 2 of 3).2	L1PA16|LINE|L1	129479	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
121218	chr19	46621651	46622550	+	0	NA	intron (NM_000960, intron 2 of 2)	MIR3|SINE|MIR	2989	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
185179	chr5	119360601	119361000	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	4781	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
190929	chr6	2874751	2877080	+	0	NA	intron (NR_033851, intron 1 of 1)	intron (NR_033851, intron 1 of 1)	595	NR_033851	221756		NM_182544		SERPINB9P1	SERPINB9P	serpin family B member 9 pseudogene 1	pseudo
5670	chr1	26320471	26320630	+	0	NA	TTS (NM_001803)	TTS (NM_001803)	-2285	NM_145345	91544		NM_145345	ENSG00000158062	UBXN11	COA-1|PP2243|SOC|SOCI|UBXD5	UBX domain protein 11	protein-coding
88114	chr16	81558951	81559130	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	25138	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
65866	chr14	55065521	55065980	+	0	NA	3' UTR (NM_144578, exon 4 of 4)	3' UTR (NM_144578, exon 4 of 4)	14103	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
69955	chr14	99683511	99685100	+	0	NA	promoter-TSS (NM_006668)	promoter-TSS (NM_006668)	7	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
59103	chr13	21146201	21146630	+	0	NA	intron (NM_001366643, intron 3 of 4)	Kanga1c|DNA|TcMar-Tc2	5869	NM_001366643	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
229534	chr9	122835221	122835800	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-6922	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
114277	chr19	11582651	11582750	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3725	NM_001111035	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
62732	chr13	106490851	106491280	+	0	NA	3' UTR (NM_001372057, exon 4 of 4)	3' UTR (NM_001372057, exon 4 of 4)	44597	NM_001372057	1948		NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5|ephrin-B2	ephrin B2	protein-coding
134341	chr2	136117801	136118600	+	0	NA	promoter-TSS (NM_003467)	promoter-TSS (NM_003467)	-51	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
82355	chr16	15966821	15967480	+	0	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	17534	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
83835	chr16	28862851	28865330	+	0	NA	promoter-TSS (NM_015503)	promoter-TSS (NM_015503)	97	NM_015503	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
200841	chr6	138162671	138162830	+	0	NA	intron (NM_020340, intron 1 of 33)	intron (NM_020340, intron 1 of 33)	811	NM_020340	57221		NM_020340	ENSG00000112379	ARFGEF3	A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1	ARFGEF family member 3	protein-coding
125203	chr2	10278151	10279050	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-24304	NM_002149	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
128288	chr2	54601271	54601630	+	0	NA	intron (NM_178313, intron 2 of 30)	intron (NM_178313, intron 2 of 30)	43056	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
103322	chr17	77935121	77935580	+	0	NA	Intergenic	Intergenic	-51263	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
2140	chr1	8359071	8359630	+	0	NA	intron (NM_001042682, intron 9 of 12)	intron (NM_001042682, intron 9 of 12)	41236	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
132521	chr2	106137671	106138850	+	0	NA	5' UTR (NM_001253876, exon 1 of 10)	5' UTR (NM_001253876, exon 1 of 10)	621	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
141802	chr20	298401	300380	+	0	NA	3' UTR (NM_033089, exon 1 of 1)	3' UTR (NM_033089, exon 1 of 1)	1820	NM_033089	85364		NM_033089	ENSG00000247315	ZCCHC3	C20orf99	zinc finger CCHC-type containing 3	protein-coding
64010	chr14	22498351	22498450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-15441	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
112573	chr19	6631721	6632550	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	38023	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
187262	chr5	141508171	141508530	+	0	NA	intron (NM_018912, intron 3 of 3)	intron (NM_018912, intron 3 of 3)	19109	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
157032	chr22	42560551	42561480	+	0	NA	intron (NR_104300, intron 8 of 10)	intron (NR_104300, intron 8 of 10)	7059	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
55207	chr12	101781971	101782730	+	0	NA	intron (NM_024312, intron 5 of 20)	L3|LINE|CR1	-42878	NM_153694	50511		NM_153694	ENSG00000139351	SYCP3	COR1|RPRGL4|SCP3|SPGF4	synaptonemal complex protein 3	protein-coding
155226	chr22	37908751	37909130	+	0	NA	intron (NM_033386, intron 1 of 15)	L2a|LINE|L2	2643	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
192925	chr6	27693571	27695000	+	0	NA	non-coding (NR_038293, exon 1 of 3)	non-coding (NR_038293, exon 1 of 3)	206	NR_038292	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
56821	chr12	120221901	120222580	+	0	NA	intron (NM_001080855, intron 5 of 11)	MIR|SINE|MIR	20949	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
129510	chr2	69640401	69641450	+	0	NA	intron (NM_001371577, intron 2 of 14)	L2a|LINE|L2	2813	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
126713	chr2	30172311	30173150	+	0	NA	Intergenic	Intergenic	-14704	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
190194	chr5	178209471	178209780	+	0	NA	intron (NM_004499, intron 6 of 6)	intron (NM_004499, intron 6 of 6)	5092	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
82406	chr16	16224551	16224650	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-1106	NM_001171	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
181356	chr5	40486421	40487150	+	0	NA	Intergenic	Intergenic	-193130	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
86000	chr16	57466471	57467030	+	0	NA	intron (NM_032940, intron 4 of 8)	intron (NM_032940, intron 4 of 8)	4071	NM_032940	5432		NM_002694	ENSG00000102978	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	RNA polymerase II subunit C	protein-coding
72992	chr15	40599021	40599700	+	0	NA	intron (NM_144508, intron 1 of 25)	intron (NM_144508, intron 1 of 25)	5111	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
112240	chr19	5722151	5722250	+	0	NA	intron (NM_152784, intron 1 of 21)	AluSx3|SINE|Alu	1563	NM_152784	257062		NM_152784	ENSG00000174898	CATSPERD	TMEM146	cation channel sperm associated auxiliary subunit delta	protein-coding
56128	chr12	110894371	110894880	+	0	NA	intron (NM_152591, intron 9 of 11)	intron (NM_152591, intron 9 of 11)	25954	NM_000432	4633		NM_000432	ENSG00000111245	MYL2	CMH10|MFM12|MLC-2|MLC-2s/v|MLC-2v|MLC2	myosin light chain 2	protein-coding
47144	chr12	753801	754300	+	0	NA	exon (NM_213655, exon 1 of 28)	exon (NM_213655, exon 1 of 28)	1127	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
25966	chr10	11682151	11682850	+	0	NA	Intergenic	Intergenic	-59882	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
72823	chr15	40116801	40117000	+	0	NA	Intergenic	Intergenic	-8021	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
29855	chr10	72356651	72356980	+	0	NA	Intergenic	AluJb|SINE|Alu	-1896	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
146646	chr20	50366651	50366950	+	0	NA	Intergenic	Intergenic	-45458	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
138146	chr2	202314871	202315230	+	0	NA	Intergenic	AluSq|SINE|Alu	21999	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
238640	chrX	153970601	153971500	+	0	NA	TTS (NR_046608)	TTS (NR_046608)	768	NM_005334	3054		NM_005334	ENSG00000172534	HCFC1	CFF|HCF|HCF-1|HCF1|HFC1|MAHCX|MRX3|PPP1R89|VCAF|XLID3	host cell factor C1	protein-coding
196016	chr6	42019321	42019600	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSz|SINE|Alu	29434	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
56783	chr12	120190251	120190950	+	0	NA	intron (NM_006836, intron 1 of 57)	MER20|DNA|hAT-Charlie	4115	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
162872	chr3	49368501	49368950	+	0	NA	intron (NM_001313941, intron 3 of 5)	AluY|SINE|Alu	-10125	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
52818	chr12	57001271	57001730	+	0	NA	3' UTR (NM_014830, exon 2 of 2)	3' UTR (NM_014830, exon 2 of 2)	5046	NM_014830	9880		NM_014830	ENSG00000166860	ZBTB39	ZNF922	zinc finger and BTB domain containing 39	protein-coding
73977	chr15	51971001	51972100	+	0	NA	intron (NM_001323903, intron 1 of 12)	CpG	228	NM_001323904	123169		NM_138792	ENSG00000166477	LEO1	RDL	LEO1 homolog, Paf1/RNA polymerase II complex component	protein-coding
238996	chrX	156000221	156000680	+	0	NA	intron (NM_002186, intron 1 of 8)	intron (NM_002186, intron 1 of 8)	2754	NM_002186	3581		NM_002186	ENSG00000124334	IL9R	CD129|IL-9R	interleukin 9 receptor	protein-coding
76113	chr15	72510551	72510930	+	0	NA	intron (NM_005744, intron 1 of 13)	AluY|SINE|Alu	36410	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
81604	chr16	10500921	10501350	+	0	NA	Intergenic	LTR19A|LTR|ERV1	27063	NR_149081	106144584		NR_149081	ENSG00000260468	LINC01290	-	long intergenic non-protein coding RNA 1290	ncRNA
179807	chr5	414251	414500	+	0	NA	intron (NR_165159, intron 7 of 13)	intron (NR_165159, intron 7 of 13)	28785	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
146990	chr20	53322701	53323050	+	0	NA	intron (NM_173485, intron 2 of 2)	intron (NM_173485, intron 2 of 2)	137592	NM_001193421	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
130376	chr2	85300121	85301080	+	0	NA	intron (NM_031283, intron 4 of 11)	intron (NM_031283, intron 4 of 11)	27389	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
126614	chr2	28794271	28794630	+	0	NA	intron (NM_206876, intron 8 of 8)	AluY|SINE|Alu	-16384	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
54392	chr12	89933151	89933450	+	0	NA	Intergenic	Intergenic	-14393	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
5918	chr1	26845201	26846030	+	0	NA	intron (NM_032283, intron 2 of 7)	AluSx1|SINE|Alu	-17534	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
37126	chr11	13335121	13335680	+	0	NA	intron (NM_001351821, intron 3 of 19)	intron (NM_001351821, intron 3 of 19)	57610	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
195615	chr6	37697501	37698700	+	0	NA	promoter-TSS (NM_153487)	promoter-TSS (NM_153487)	-217	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
129767	chr2	71049671	71049900	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-18511	NM_001330426	55577		NM_017567	ENSG00000124357	NAGK	GNK|HSA242910	N-acetylglucosamine kinase	protein-coding
20810	chr1	201211071	201211230	+	0	NA	exon (NM_001164586, exon 12 of 24)	exon (NM_001164586, exon 12 of 24)	20326	NM_001367841	91156		NM_178275	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin like and fibronectin type III domain containing 1	protein-coding
7971	chr1	37811021	37811950	+	0	NA	3' UTR (NM_005955, exon 11 of 11)	3' UTR (NM_005955, exon 11 of 11)	-3277	NM_024640	79693		NM_024640	ENSG00000196449	YRDC	DRIP3|GAMOS10|IRIP|SUA5	yrdC N6-threonylcarbamoyltransferase domain containing	protein-coding
97419	chr17	43452301	43452500	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	7594	NR_031751	100313779		NR_031751	ENSG00000284344	MIR2117	-	microRNA 2117	ncRNA
145045	chr20	38408671	38408900	+	0	NA	Intergenic	Intergenic	16545	NR_002910	26776		NR_002910		SNORA71B	RNU71B|U71b	small nucleolar RNA, H/ACA box 71B	snoRNA
221388	chr8	123414351	123414900	+	0	NA	Intergenic	FRAM|SINE|Alu	-2100	NR_133926	55093		NM_018024	ENSG00000156795	NTAQ1	C8orf32|WDYHV1	N-terminal glutamine amidase 1	protein-coding
24531	chr1	244841701	244841900	+	0	NA	intron (NM_001312872, intron 2 of 4)	intron (NM_001312872, intron 2 of 4)	6142	NM_198076	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
144443	chr20	35492751	35493300	+	0	NA	intron (NM_007186, intron 22 of 34)	AluSx1|SINE|Alu	33042	NM_001318219	11190		NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1|CRDHL2	centrosomal protein 250	protein-coding
203923	chr7	1523801	1524000	+	0	NA	Intergenic	Intergenic	-6802	NM_002360	7975		NM_002360	ENSG00000198517	MAFK	NFE2U|P18	MAF bZIP transcription factor K	protein-coding
3664	chr1	16412471	16412630	+	0	NA	intron (NM_001353349, intron 2 of 10)	AluSx|SINE|Alu	24874	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
95962	chr17	39098201	39098400	+	0	NA	intron (NM_020405, intron 7 of 13)	intron (NM_020405, intron 7 of 13)	41281	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
72781	chr15	39932051	39932350	+	0	NA	Intergenic	AluJr|SINE|Alu	-1915	NM_001013703	440275		NM_001013703	ENSG00000128829	EIF2AK4	GCN2|PVOD2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding
63986	chr14	22281001	22281200	+	0	NA	Intergenic	Intergenic	151653	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
21483	chr1	205669821	205670080	+	0	NA	intron (NM_033102, intron 1 of 4)	intron (NM_033102, intron 1 of 4)	10559	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
101740	chr17	69423571	69423800	+	0	NA	intron (NM_002758, intron 1 of 11)	intron (NM_002758, intron 1 of 11)	8988	NM_002758	5608		NM_002758	ENSG00000108984	MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
214938	chr7	151705601	151706130	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	30398	NM_001363698	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
52111	chr12	54192771	54193130	+	0	NA	Intergenic	AluJr|SINE|Alu	-3956	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
198403	chr6	105880351	105880450	+	0	NA	Intergenic	Intergenic	-205936	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
156991	chr22	42505001	42505280	+	0	NA	non-coding (NR_027786, exon 7 of 11)	non-coding (NR_027786, exon 7 of 11)	4561	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
228318	chr9	98215901	98216100	+	0	NA	intron (NM_018421, intron 6 of 12)	intron (NM_018421, intron 6 of 12)	-2449	NM_001267572	55357		NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
233518	chrM	12601	13500	+	0	NA	Intergenic	Intergenic	-5536	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
204876	chr7	5934751	5935650	+	0	NA	intron (NM_173565, intron 17 of 20).2	(ATAC)n|Simple_repeat|Simple_repeat	35483	NM_001099697	728194		NM_001099697	ENSG00000169402	RSPH10B2	-	radial spoke head 10 homolog B2	protein-coding
116911	chr19	18786401	18786830	+	0	NA	exon (NM_000095, exon 11 of 19)	exon (NM_000095, exon 11 of 19)	4690	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
67264	chr14	69131801	69132000	+	0	NA	intron (NM_001284208, intron 1 of 6)	intron (NM_001284208, intron 1 of 6)	20699	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
220090	chr8	94261571	94262730	+	0	NA	5' UTR (NM_005261, exon 1 of 5)	5' UTR (NM_005261, exon 1 of 5)	169	NM_005261	2669		NM_005261	ENSG00000164949	GEM	KIR	GTP binding protein overexpressed in skeletal muscle	protein-coding
19572	chr1	179205251	179205550	+	0	NA	intron (NM_007314, intron 1 of 11)	MLT1I|LTR|ERVL-MaLR	24277	NM_001168238	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
106578	chr18	21956021	21956380	+	0	NA	Intergenic	L1MEf|LINE|L1	-124794	NR_110369	102723167		NR_110369	ENSG00000265142	MIR133A1HG	MIR1-2HG	MIR133A1 host gene	ncRNA
195488	chr6	37154201	37154800	+	0	NA	Intergenic	AluJr|SINE|Alu	-15652	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
236762	chrX	78944551	78946150	+	0	NA	promoter-TSS (NM_001324218)	promoter-TSS (NM_001324218)	18	NM_198333	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
120493	chr19	44760571	44761430	+	0	NA	TTS (NM_005178)	TTS (NM_005178)	2343	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
82616	chr16	18920321	18921050	+	0	NA	intron (NM_015092, intron 1 of 62)	AluJb|SINE|Alu	5723	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
105346	chr17	82633471	82634030	+	0	NA	intron (NM_019613, intron 2 of 9)	AluJr|SINE|Alu	14694	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
161204	chr3	39153401	39154250	+	0	NA	promoter-TSS (NM_033027)	promoter-TSS (NM_033027)	-234	NM_033027	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
47782	chr12	6561801	6562280	+	0	NA	intron (NM_001258309, intron 10 of 16)	AluSx|SINE|Alu	-5998	NM_001330324	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
18731	chr1	167469151	167469450	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	49229	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
195272	chr6	36488051	36488730	+	0	NA	non-coding (NR_104481, exon 4 of 4)	non-coding (NR_104481, exon 4 of 4)	45390	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
136428	chr2	176493371	176493680	+	0	NA	Intergenic	Intergenic	107527	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
141125	chr2	239036401	239036600	+	0	NA	Intergenic	Intergenic	32414	NR_039642	100616397		NR_039642	ENSG00000266109	MIR4440	mir-4440	microRNA 4440	ncRNA
13678	chr1	116575451	116575550	+	0	NA	3' UTR (NM_001542, exon 12 of 12)	3' UTR (NM_001542, exon 12 of 12)	-4407	NM_001144822	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
200259	chr6	132495851	132496230	+	0	NA	intron (NR_137169, intron 2 of 8)	intron (NR_137169, intron 2 of 8)	16743	NM_001326578	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
130257	chr2	84857001	84857830	+	0	NA	intron (NM_001307978, intron 2 of 4)	hAT-N1_Mam|DNA|hAT-Tip100?	23669	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
197169	chr6	59664951	59665050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1703554	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
42329	chr11	68487221	68487480	+	0	NA	intron (NM_001352362, intron 2 of 24)	AluSz6|SINE|Alu	26598	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
123915	chr19	55353401	55356030	+	0	NA	promoter-TSS (NM_001369799)	promoter-TSS (NM_001369799)	4	NM_144613	125965		NM_144613	ENSG00000160471	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit 6B2	protein-coding
194116	chr6	31956851	31957150	+	0	NA	promoter-TSS (NR_031601).5	promoter-TSS (NR_031601).5	-60	NR_031601	100302242		NR_031601	ENSG00000284446	MIR1236	MIRN1236|hsa-mir-1236	microRNA 1236	ncRNA
237332	chrX	118503771	118503930	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	7941	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
110960	chr19	2942671	2943600	+	0	NA	intron (NM_021217, intron 1 of 3)	intron (NM_021217, intron 1 of 3)	1836	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
74574	chr15	60545651	60545950	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	46726	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
47991	chr12	6912001	6912430	+	0	NA	intron (NM_006992, intron 6 of 6)	AluJr4|SINE|Alu	-2365	NM_001975	2026		NM_001975	ENSG00000111674	ENO2	HEL-S-279|NSE	enolase 2	protein-coding
206725	chr7	36600871	36601630	+	0	NA	intron (NM_001177506, intron 11 of 21)	intron (NM_001177506, intron 11 of 21)	-1130	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
189328	chr5	172165051	172165550	+	0	NA	intron (NM_005990, intron 1 of 18)	intron (NM_005990, intron 1 of 18)	22924	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
97609	chr17	44125551	44125850	+	0	NA	Intergenic	AluSg|SINE|Alu	-2059	NM_001382393	10014		NM_005474	ENSG00000108840	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
107980	chr18	58612571	58612930	+	0	NA	intron (NM_052947, intron 1 of 12)	intron (NM_052947, intron 1 of 12)	12130	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
168752	chr3	151202171	151202330	+	0	NA	intron (NM_013308, intron 1 of 2)	intron (NM_013308, intron 1 of 2)	966	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
216402	chr8	17962801	17963850	+	0	NA	intron (NR_148032, intron 17 of 38)	intron (NR_148032, intron 17 of 38)	40337	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
179295	chr4	177319551	177320580	+	0	NA	intron (NM_018248, intron 1 of 9)	intron (NM_018248, intron 1 of 9)	10191	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
181277	chr5	39274751	39275980	+	0	NA	Intergenic	Intergenic	-4716	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
159682	chr3	15500001	15501000	+	0	NA	intron (NM_005677, intron 1 of 16)	intron (NM_005677, intron 1 of 16)	-1628	NM_080538	8292		NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
8784	chr1	42848121	42848400	+	0	NA	intron (NM_015911, intron 1 of 1)	intron (NM_015911, intron 1 of 1)	1647	NM_001242739	51058		NM_015911	ENSG00000164011	ZNF691	Zfp691	zinc finger protein 691	protein-coding
93627	chr17	19163971	19164200	+	0	NA	Intergenic	Intergenic	-1461	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
139075	chr2	218864051	218864480	+	0	NA	intron (NM_006522, intron 1 of 3)	AluSx1|SINE|Alu	4460	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
81414	chr16	8663451	8663900	+	0	NA	Intergenic	MIRb|SINE|MIR	-10942	NM_020686	18		NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
128104	chr2	48106371	48107280	+	0	NA	Intergenic	Intergenic	-200327	NM_001190274	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
118151	chr19	35010951	35011700	+	0	NA	intron (NM_001320034, intron 6 of 18)	L2b|LINE|L2	11002	NM_001136199	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
20661	chr1	200207721	200208030	+	0	NA	Intergenic	Intergenic	165050	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
192067	chr6	16633651	16633950	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	126384	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
23530	chr1	229139321	229139950	+	0	NA	Intergenic	Intergenic	35166	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
13367	chr1	113887421	113887680	+	0	NA	promoter-TSS (NM_001010922)	promoter-TSS (NM_001010922)	31	NM_001010922	440603		NM_001010922	ENSG00000188761	BCL2L15	Bfk|C1orf178	BCL2 like 15	protein-coding
185750	chr5	132176651	132177530	+	0	NA	Intergenic	Intergenic	-7786	NR_047470	100861518		NR_047470	ENSG00000237714	P4HA2-AS1	-	P4HA2 antisense RNA 1	ncRNA
230054	chr9	127404771	127404930	+	0	NA	exon (NM_001271711, exon 8 of 9)	exon (NM_001271711, exon 8 of 9)	7681	NM_014580	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
2810	chr1	11011671	11013280	+	0	NA	promoter-TSS (NM_007375)	promoter-TSS (NM_007375)	-179	NM_007375	23435		NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding
128472	chr2	57549751	57549850	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	-357851	NM_001288838	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
26309	chr10	15085351	15085450	+	0	NA	intron (NM_001039844, intron 1 of 3)	L4_C_Mam|LINE|RTE-X	3376	NR_144471	108949267		NR_144471		ACBD7-DCLRE1CP1	-	ACBD7-DCLRE1CP1 readthrough	ncRNA
213183	chr7	132461051	132461600	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	115145	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
88502	chr16	85262151	85262450	+	0	NA	Intergenic	Intergenic	-20658	NR_038859	197196		NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
102471	chr17	75728471	75728630	+	0	NA	intron (NM_001005619, intron 5 of 38)	intron (NM_001005619, intron 5 of 38)	3854	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
95343	chr17	35788821	35789280	+	0	NA	intron (NR_111988, intron 1 of 8)	intron (NR_111988, intron 1 of 8)	6591	NM_024302	79148		NM_024302	ENSG00000271447	MMP28	EPILYSIN|MM28|MMP-25|MMP-28|MMP25	matrix metallopeptidase 28	protein-coding
114356	chr19	12331051	12331370	+	0	NA	intron (NM_001363608, intron 1 of 4)	MIR|SINE|MIR	2423	NM_001363608	147837		NM_145276	ENSG00000188868	ZNF563	-	zinc finger protein 563	protein-coding
93974	chr17	21770851	21771750	+	0	NA	Intergenic	CpG	78777	NM_001194958	100134444		NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium inwardly rectifying channel subfamily J member 18	protein-coding
92260	chr17	8003921	8004180	+	0	NA	exon (NM_000180, exon 3 of 20)	exon (NM_000180, exon 3 of 20)	1435	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
33204	chr10	113854601	113856180	+	0	NA	promoter-TSS (NM_001271816)	promoter-TSS (NM_001271816)	729	NM_198514	374354		NM_198514	ENSG00000196865	NHLRC2	FINCA	NHL repeat containing 2	protein-coding
28728	chr10	61933621	61934480	+	0	NA	intron (NM_032199, intron 2 of 9)	Tigger1|DNA|TcMar-Tigger	32351	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
124036	chr19	55493871	55494930	+	0	NA	intron (NM_001144950, intron 7 of 13)	intron (NM_001144950, intron 7 of 13)	5964	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
155550	chr22	38718221	38718830	+	0	NA	intron (NM_004286, intron 4 of 11)	intron (NM_004286, intron 4 of 11)	12581	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
211755	chr7	107198201	107198700	+	0	NA	intron (NM_001244262, intron 9 of 10).2	AluSx3|SINE|Alu	29447	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
166608	chr3	119297751	119298530	+	0	NA	intron (NM_020754, intron 1 of 11)	intron (NM_020754, intron 1 of 11)	3757	NM_020754	57514		NM_020754	ENSG00000031081	ARHGAP31	AOS|AOS1|CDGAP	Rho GTPase activating protein 31	protein-coding
34115	chr10	126672551	126672650	+	0	NA	Intergenic	Intergenic	-1907	NM_001350922	118611		NM_001004298	ENSG00000154493	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding
174287	chr4	38328751	38329600	+	0	NA	Intergenic	Intergenic	-37739	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
49045	chr12	14388151	14388250	+	0	NA	intron (NM_181352, intron 1 of 14)	AluSp|SINE|Alu	2919	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
235871	chrX	51495571	51495930	+	0	NA	intron (NM_018159, intron 1 of 1)	intron (NM_018159, intron 1 of 1)	842	NM_018159	55190		NM_018159	ENSG00000196368	NUDT11	APS1|ASP1|DIPP3b|DIPP3beta|hDIPP3beta	nudix hydrolase 11	protein-coding
194733	chr6	33855221	33855530	+	0	NA	Intergenic	Intergenic	41532	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
14053	chr1	120771801	120772000	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-33656	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
216174	chr8	11772471	11773530	+	0	NA	intron (NM_001135748, intron 3 of 4)	MIR3|SINE|MIR	3290	NM_001135748	252969		NM_145043	ENSG00000154328	NEIL2	NEH2|NEI2	nei like DNA glycosylase 2	protein-coding
145551	chr20	44207201	44207600	+	0	NA	intron (NM_016470, intron 1 of 3)	intron (NM_016470, intron 1 of 3)	3371	NM_016470	51526		NM_016470	ENSG00000132823	OSER1	C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1	oxidative stress responsive serine rich 1	protein-coding
30799	chr10	84423971	84424130	+	0	NA	promoter-TSS (NM_001284243)	promoter-TSS (NM_001284243)	-889	NM_001284243	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
92295	chr17	8108971	8109330	+	0	NA	intron (NM_021628, intron 12 of 15)	intron (NM_021628, intron 12 of 15)	9153	NM_001369446	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
221863	chr8	128312901	128313340	+	0	NA	Intergenic	Intergenic	163004	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
172583	chr4	2474571	2475400	+	0	NA	intron (NM_001185009, intron 2 of 8)	AluSp|SINE|Alu	5532	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
4881	chr1	23783251	23783850	+	0	NA	intron (NM_020362, intron 3 of 5)	AluSz|SINE|Alu	5132	NM_020362	57095		NM_020362	ENSG00000057757	PITHD1	C1orf128|HT014|TXNL1CL	PITH domain containing 1	protein-coding
142274	chr20	3202851	3203700	+	0	NA	exon (NM_023935, exon 2 of 9)	exon (NM_023935, exon 2 of 9)	1407	NM_023935	65992		NM_023935	ENSG00000198171	DDRGK1	C20orf116|SEMDSH|UFBP1|dJ1187M17.3	DDRGK domain containing 1	protein-coding
193253	chr6	29947201	29947890	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	5013	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
97063	chr17	42374101	42374500	+	0	NA	intron (NM_001369516, intron 1 of 23)	intron (NM_001369516, intron 1 of 23)	14142	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
215823	chr8	6425021	6425480	+	0	NA	intron (NR_136159, intron 3 of 6)	intron (NR_136159, intron 3 of 6)	18097	NM_001322045	79648		NM_024596	ENSG00000147316	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
89550	chr16	89217301	89218800	+	0	NA	intron (NM_001378881, intron 1 of 6)	CpG	347	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
166958	chr3	125352101	125352300	+	0	NA	intron (NM_001348427, intron 1 of 9)	L1MB8|LINE|L1	5080	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
137933	chr2	201112921	201113180	+	0	NA	Intergenic	AluSz|SINE|Alu	-3054	NM_001127184	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
16685	chr1	155197521	155198380	+	0	NA	intron (NM_007112, intron 18 of 22)	intron (NM_007112, intron 18 of 22)	2773	NR_030281	693235		NR_030281	ENSG00000284586	MIR92B	MIRN92B|hsa-mir-92b|mir-92b	microRNA 92b	ncRNA
63011	chr13	112687171	112687580	+	0	NA	Intergenic	Intergenic	-2954	NM_032189	23250		NM_015205	ENSG00000068650	ATP11A	ATPIH|ATPIS|AUNA2|DFNA84|HLD24	ATPase phospholipid transporting 11A	protein-coding
90338	chr17	1181201	1182550	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	-1894	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
131812	chr2	98607701	98609430	+	0	NA	promoter-TSS (NM_001008215)	promoter-TSS (NM_001008215)	17	NM_001330354	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
198311	chr6	100657771	100657930	+	0	NA	intron (NM_006828, intron 16 of 41)	intron (NM_006828, intron 16 of 41)	-192929	NM_005068	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
75290	chr15	65132801	65134480	+	0	NA	exon (NM_005707, exon 1 of 5)	exon (NM_005707, exon 1 of 5)	168	NM_005707	10081		NM_005707	ENSG00000090470	PDCD7	59K|ES18|HES18	programmed cell death 7	protein-coding
225481	chr9	35616651	35617780	+	0	NA	exon (NM_001782, exon 3 of 9)	exon (NM_001782, exon 3 of 9)	1198	NM_001782	971		NM_001782	ENSG00000137101	CD72	CD72b|LYB2	CD72 molecule	protein-coding
128565	chr2	60894851	60895150	+	0	NA	intron (NM_001291746, intron 3 of 9)	AluSp|SINE|Alu	13426	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133365	chr2	117815971	117816350	+	0	NA	intron (NM_006773, intron 1 of 13)	Tigger3b|DNA|TcMar-Tigger	1469	NM_006773	8886		NM_006773	ENSG00000088205	DDX18	Has1|MrDb	DEAD-box helicase 18	protein-coding
202255	chr6	156953401	156953840	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-82807	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
80515	chr16	2751801	2753770	+	0	NA	promoter-TSS (NR_027275)	promoter-TSS (NR_027275)	147	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
10953	chr1	84170201	84170400	+	0	NA	intron (NM_001375580, intron 1 of 8)	L1MEd|LINE|L1	5606	NM_001375577	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
153242	chr22	24010001	24010200	+	0	NA	Intergenic	Intergenic	-1204	NM_012295	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
191381	chr6	7541451	7542250	+	0	NA	5' UTR (NM_001008844, exon 1 of 24)	5' UTR (NM_001008844, exon 1 of 24)	179	NM_001319034	1832		NM_004415	ENSG00000096696	DSP	DCWHKTA|DP	desmoplakin	protein-coding
182641	chr5	67159401	67159650	+	0	NA	intron (NM_015183, intron 25 of 27)	intron (NM_015183, intron 25 of 27)	37274	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
75265	chr15	64992621	64993200	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2996	NM_001127890	51324		NM_016630	ENSG00000090487	SPG21	ABHD21|ACP33|BM-019|GL010|MAST	SPG21 abhydrolase domain containing, maspardin	protein-coding
1422	chr1	2580651	2581150	+	0	NA	intron (NR_121638, intron 1 of 3)	MIRc|SINE|MIR	-5623	NR_036637	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
138882	chr2	217510801	217511050	+	0	NA	intron (NR_026597, intron 2 of 12)	L1MC4|LINE|L1	228192	NR_133642	105373877		NR_133642		DIRC3-AS1	-	DIRC3 antisense RNA 1	ncRNA
180997	chr5	35821421	35821680	+	0	NA	Intergenic	Intergenic	-35341	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
110648	chr19	2239121	2239500	+	0	NA	intron (NM_007165, intron 1 of 8)	AluSx|SINE|Alu	2486	NM_007165	8175		NM_007165	ENSG00000104897	SF3A2	PRP11|PRPF11|SAP62|SF3a66	splicing factor 3a subunit 2	protein-coding
28183	chr10	44309471	44309630	+	0	NA	Intergenic	MLT2B2|LTR|ERVL	16800	NR_164139	100130539		NM_001258000	ENSG00000277288	LINC02881	C10orf142	long intergenic non-protein coding RNA 2881	ncRNA
194634	chr6	33578301	33579120	+	0	NA	intron (NM_001188, intron 1 of 5)	intron (NM_001188, intron 1 of 5)	1566	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
119576	chr19	40672051	40672550	+	0	NA	intron (NM_004756, intron 8 of 9)	intron (NM_004756, intron 8 of 9)	17864	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
2161	chr1	8424201	8425600	+	0	NA	intron (NR_125999, intron 1 of 3)	intron (NR_125999, intron 1 of 3)	255	NR_125999	102724552		NR_125999		RERE-AS1	-	RERE antisense RNA 1	ncRNA
103052	chr17	77164851	77165150	+	0	NA	intron (NM_001039573, intron 3 of 17)	intron (NM_001039573, intron 3 of 17)	-20213	NM_001144001	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
175394	chr4	70769551	70769850	+	0	NA	intron (NM_001345840, intron 6 of 13)	Tigger1|DNA|TcMar-Tigger	35290	NM_001345840	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
128	chr1	505121	505630	+	0	NA	Intergenic	AluJr|SINE|Alu	-9930	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
68930	chr14	91379321	91379950	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	38185	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
77688	chr15	85644271	85644430	+	0	NA	intron (NM_007200, intron 9 of 36)	AluSq2|SINE|Alu	24400	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
83802	chr16	28823701	28825730	+	0	NA	intron (NM_148416, intron 1 of 22)	intron (NM_148416, intron 1 of 22)	1667	NM_007245	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
113260	chr19	8509371	8509530	+	0	NA	TTS (NM_001146175)	TTS (NM_001146175)	4717	NM_032370	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
11988	chr1	94807701	94808300	+	0	NA	intron (NR_160783, intron 1 of 3)	AluSg4|SINE|Alu	12232	NR_104131	101928079		NR_104131	ENSG00000293271	SLC44A3-AS1	LINC01057|XLOC_000303	SLC44A3 antisense RNA 1	ncRNA
198817	chr6	109062421	109063250	+	0	NA	intron (NM_014454, intron 1 of 9)	MER44A|DNA|TcMar-Tigger	32011	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
229899	chr9	126555521	126555780	+	0	NA	Intergenic	AluSz|SINE|Alu	-58278	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
119988	chr19	41911851	41912400	+	0	NA	intron (NM_001365103, intron 2 of 5)	intron (NM_001365103, intron 2 of 5)	16324	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
160185	chr3	23760521	23761030	+	0	NA	Intergenic	Intergenic	-45180	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
219524	chr8	74866771	74866930	+	0	NA	Intergenic	L1PA2|LINE|L1	42316	NM_015886	51050		NM_015886	ENSG00000137558	PI15	CRISP8|P24TI|P25TI	peptidase inhibitor 15	protein-coding
60979	chr13	46666871	46667350	+	0	NA	intron (NM_015116, intron 2 of 18)	intron (NM_015116, intron 2 of 18)	113940	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
179413	chr4	184250701	184251400	+	0	NA	Intergenic	Intergenic	-33177	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
61733	chr13	74131101	74131400	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	2679	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
59506	chr13	26930301	26930590	+	0	NA	Intergenic	Intergenic	-169659	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
177684	chr4	121802851	121803150	+	0	NA	exon (NM_001034194, exon 4 of 13)	exon (NM_001034194, exon 4 of 13)	1677	NM_001034194	5393		NM_005033	ENSG00000123737	EXOSC9	PCH1D|PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
62705	chr13	102849071	102849250	+	0	NA	intron (NM_000123, intron 1 of 14)	intron (NM_000123, intron 1 of 14)	3128	NM_000123	2073		NM_000123	ENSG00000134899	ERCC5	COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC	ERCC excision repair 5, endonuclease	protein-coding
191887	chr6	15337121	15337780	+	0	NA	intron (NM_001267040, intron 1 of 17)	HUERS-P2-int|LTR|ERV1	88595	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
34534	chr10	132893771	132894030	+	0	NA	intron (NM_001200049, intron 24 of 57)	intron (NM_001200049, intron 24 of 57)	48670	NM_001200049	54777		NM_017609	ENSG00000171811	CFAP46	C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	cilia and flagella associated protein 46	protein-coding
11239	chr1	88935921	88936380	+	0	NA	non-coding (NR_146183, exon 14 of 15)	non-coding (NR_146183, exon 14 of 15)	-44583	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
15231	chr1	149561451	149561850	+	0	NA	Intergenic	AluSg4|SINE|Alu	-22173	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
206892	chr7	37703221	37703480	+	0	NA	intron (NM_001381946, intron 2 of 2)	L1MEd|LINE|L1	19584	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
222389	chr8	133900571	133900950	+	0	NA	intron (NR_125424, intron 3 of 3)	L1MC4|LINE|L1	14264	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
4351	chr1	20658571	20659250	+	0	NA	intron (NM_005216, intron 2 of 10)	AluJr|SINE|Alu	2459	NM_005216	1650		NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein-coding
79146	chr16	253871	254180	+	0	NA	intron (NM_001284497, intron 2 of 12)	intron (NM_001284497, intron 2 of 12)	19204	NM_001284497	83986		NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding
167314	chr3	128727651	128728150	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	1717	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
14786	chr1	146085551	146085750	+	0	NA	intron (NM_001302371, intron 65 of 89)	intron (NM_001302371, intron 65 of 89)	33054	NR_125967	101928979		NR_125967		LINC01719	-	long intergenic non-protein coding RNA 1719	ncRNA
133957	chr2	130588651	130589550	+	0	NA	Intergenic	MER74A|LTR|ERVL	10475	NM_001270421	55997		NM_032545	ENSG00000136698	CFC1	CFC1B|CRYPTIC|DTGA2|HTX2	cryptic, EGF-CFC family member 1	protein-coding
197237	chr6	69791051	69791530	+	0	NA	intron (NM_018368, intron 1 of 15)	MER5A|DNA|hAT-Charlie	5176	NM_001363722	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
203959	chr7	1559471	1560550	+	0	NA	Intergenic	Intergenic	-3805	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
55934	chr12	109899371	109900930	+	0	NA	promoter-TSS (NM_032300)	promoter-TSS (NM_032300)	-124	NM_001143852	84260		NM_032300	ENSG00000139437	TCHP	TpMs	trichoplein keratin filament binding	protein-coding
147968	chr20	62979651	62980300	+	0	NA	Intergenic	Intergenic	26989	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
67366	chr14	69728171	69728330	+	0	NA	Intergenic	Intergenic	-38892	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
63640	chr14	20857621	20857980	+	0	NA	Intergenic	Intergenic	-33603	NM_002935	6037		NM_002935	ENSG00000169397	RNASE3	ECP|RAF1|RNS3	ribonuclease A family member 3	protein-coding
127130	chr2	37662721	37663250	+	0	NA	intron (NM_001371569, intron 1 of 1)	AluSq|SINE|Alu	8657	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
168880	chr3	152306221	152307350	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	7771	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
18120	chr1	160722571	160723230	+	0	NA	Intergenic	Intergenic	-11049	NM_001256030	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
183122	chr5	74770171	74770330	+	0	NA	intron (NR_157205, intron 3 of 6)	AluSx|SINE|Alu	-2879	NM_170681	84340		NM_032380	ENSG00000164347	GFM2	EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2	GTP dependent ribosome recycling factor mitochondrial 2	protein-coding
227636	chr9	92905101	92905750	+	0	NA	Intergenic	L1PA3|LINE|L1	22858	NR_111003	642943		NR_111003		LOC642943	-	SPATA31 subfamily A pseudogene	pseudo
150024	chr21	37257051	37259130	+	0	NA	intron (NM_006052, intron 1 of 7)	CpG	9244	NM_006052	10311		NM_006052	ENSG00000157538	VPS26C	DCRA|DSCR3|DSCRA	VPS26 endosomal protein sorting factor C	protein-coding
99249	chr17	49709851	49710230	+	0	NA	TTS (NM_030802)	TTS (NM_030802)	-2076	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
185882	chr5	132686421	132686880	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4021	NR_134248	105379176		NR_134248		LOC105379176	-	uncharacterized LOC105379176	ncRNA
120215	chr19	42300671	42301030	+	0	NA	intron (NM_002573, intron 2 of 4)	AluSq|SINE|Alu	-1282	NM_199285	284338		NM_199285	ENSG00000188368	PRR19	-	proline rich 19	protein-coding
65046	chr14	39207421	39207780	+	0	NA	Intergenic	L1PBa1|LINE|L1	-26315	NM_001329214	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
42099	chr11	67572701	67573030	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-10947	NM_000852	2950		NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
177783	chr4	122921971	122923580	+	0	NA	promoter-TSS (NM_145207)	promoter-TSS (NM_145207)	-178	NM_007083	11162		NM_007083	ENSG00000170917	NUDT6	ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1	nudix hydrolase 6	protein-coding
64079	chr14	22578521	22578830	+	0	NA	intron (NM_001344, intron 1 of 2)	L1ME3A|LINE|L1	10549	NM_001344	1603		NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
40651	chr11	64735021	64735950	+	0	NA	intron (NM_001098670, intron 11 of 16)	intron (NM_001098670, intron 11 of 16)	8657	NM_001098671	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
44385	chr11	102666321	102666600	+	0	NA	Intergenic	Intergenic	39309	NM_022122	64066		NM_022122	ENSG00000137675	MMP27	MMP-27	matrix metallopeptidase 27	protein-coding
105379	chr17	82703221	82703550	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-4687	NM_006822	10966		NM_006822	ENSG00000141542	RAB40B	RAR|SEC4L	RAB40B, member RAS oncogene family	protein-coding
203609	chr7	944771	944930	+	0	NA	intron (NM_001284308, intron 1 of 10)	L1MA3|LINE|L1	966	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
215241	chr7	156920171	156920530	+	0	NA	Intergenic	L1MDb|LINE|L1	-27142	NR_146959	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
133607	chr2	124598651	124598750	+	0	NA	intron (NM_130773, intron 11 of 23)	L1PA2|LINE|L1	573413	NM_130773	129684		NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein family member 5	protein-coding
176467	chr4	89318171	89318850	+	0	NA	Intergenic	L2a|LINE|L2	-10710	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
235377	chrX	44937951	44938380	+	0	NA	intron (NM_001291416, intron 2 of 28)	AluJr|SINE|Alu	64977	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
116126	chr19	17327721	17328400	+	0	NA	intron (NM_020959, intron 13 of 17)	CpG-13984	6795	NM_020959	57719		NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
26107	chr10	13345671	13346030	+	0	NA	intron (NR_164738, intron 1 of 9)	AluSx|SINE|Alu	2443	NM_001375769	22929		NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
161810	chr3	45499321	45499580	+	0	NA	intron (NM_001368263, intron 13 of 20)	AluSx1|SINE|Alu	10095	NR_048543	100885795		NR_048543		LARS2-AS1	-	LARS2 antisense RNA 1	ncRNA
216620	chr8	22093721	22094080	+	0	NA	intron (NR_148728, intron 2 of 19)	AluJb|SINE|Alu	4746	NR_148727	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
80134	chr16	2081451	2081750	+	0	NA	exon (NM_021055, exon 30 of 41)	exon (NM_021055, exon 30 of 41)	8684	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
201900	chr6	151286251	151286550	+	0	NA	intron (NM_005100, intron 2 of 4)	intron (NM_005100, intron 2 of 4)	-39131	NM_144497	9590		NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
119549	chr19	40600201	40600500	+	0	NA	intron (NM_001042544, intron 4 of 32)	CpG	-1019	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
91684	chr17	5706821	5707080	+	0	NA	Intergenic	Intergenic	-65284	NR_040000	339166		NR_040000	ENSG00000284837	LOC339166	-	uncharacterized LOC339166	ncRNA
190704	chr6	225021	225950	+	0	NA	Intergenic	Intergenic	-20001	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
227114	chr9	85914101	85914530	+	0	NA	Intergenic	Intergenic	-26827	NM_001321881	60560		NM_021929	ENSG00000135040	NAA35	EGAP|MAK10|MAK10P|bA379P1.1	N-alpha-acetyltransferase 35, NatC auxiliary subunit	protein-coding
31057	chr10	88985301	88985700	+	0	NA	intron (NM_001320855, intron 1 of 8)	intron (NM_001320855, intron 1 of 8)	-5298	NR_028035	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
22482	chr1	221720401	221720800	+	0	NA	intron (NR_111940, intron 1 of 2)	MER21B|LTR|ERVL	16300	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
13169	chr1	112293851	112294150	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-102214	NM_018704	55917		NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
224928	chr9	32999801	33000000	+	0	NA	intron (NM_175073, intron 1 of 8)	AluY|SINE|Alu	1676	NM_001195249	54840		NM_017692	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
147996	chr20	63025471	63026180	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	11203	NR_028295	100144596		NM_022099		LINC00029	C20orf51|NCRNA00029	long intergenic non-protein coding RNA 29	ncRNA
230440	chr9	128159021	128161200	+	0	NA	promoter-TSS (NM_024112)	promoter-TSS (NM_024112)	-155	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
201650	chr6	149478551	149478950	+	0	NA	intron (NM_207360, intron 1 of 5)	intron (NM_207360, intron 1 of 5)	6264	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
122219	chr19	48972671	48973230	+	0	NA	intron (NM_002103, intron 12 of 15)	FLAM_C|SINE|Alu	7641	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
25228	chr10	5887571	5888000	+	0	NA	intron (NM_019046, intron 2 of 7)	intron (NM_019046, intron 2 of 7)	-1787	NM_001258452	84893		NM_032807	ENSG00000134452	FBH1	FBXO18|Fbx18|hFBH1	F-box DNA helicase 1	protein-coding
86441	chr16	66920071	66920230	+	0	NA	Intergenic	MIRb|SINE|MIR	-1265	NM_001204746	1014		NM_004062	ENSG00000166589	CDH16	-	cadherin 16	protein-coding
37523	chr11	18620751	18621250	+	0	NA	intron (NM_194285, intron 1 of 5)	intron (NM_194285, intron 1 of 5)	13342	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
101156	chr17	65058821	65059180	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-2260	NM_006572	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
104475	chr17	81122751	81123930	+	0	NA	exon (NM_004920, exon 9 of 13)	exon (NM_004920, exon 9 of 13)	2033	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
150942	chr21	44291471	44291830	+	0	NA	intron (NM_000383, intron 8 of 13)	intron (NM_000383, intron 8 of 13)	5774	NM_000383	326		NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
105073	chr17	82094851	82096150	+	0	NA	intron (NM_004104, intron 2 of 42)	intron (NM_004104, intron 2 of 42)	2736	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
124584	chr2	732571	732930	+	0	NA	Intergenic	CpG	-55344	NM_152834	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
167087	chr3	127458801	127459000	+	0	NA	Intergenic	Intergenic	-68230	NR_110147	101927123		NR_110147	ENSG00000244215	LINC02016	-	long intergenic non-protein coding RNA 2016	ncRNA
41630	chr11	66472351	66472650	+	0	NA	TTS (NR_120586)	TTS (NR_120586)	5595	NM_145065	246330		NM_145065	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
235520	chrX	47214201	47214650	+	0	NA	exon (NM_153280, exon 24 of 26)	exon (NM_153280, exon 24 of 26)	-3878	NM_033018	5127		NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
76516	chr15	75022851	75024280	+	0	NA	promoter-TSS (NM_021823)	promoter-TSS (NM_021823)	-25	NM_021823	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
36889	chr11	10747671	10748030	+	0	NA	Intergenic	Intergenic	-3396	NM_001346279	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
183297	chr5	76556671	76557200	+	0	NA	intron (NM_001285460, intron 1 of 34)	intron (NM_001285460, intron 1 of 34)	9526	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
46817	chr11	130429801	130430450	+	0	NA	Intergenic	Intergenic	-1516	NM_007037	11095		NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif 8	protein-coding
46034	chr11	122668171	122669380	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	13053	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
184645	chr5	107474601	107475600	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	195837	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
24200	chr1	236063271	236063430	+	0	NA	intron (NM_002508, intron 1 of 19)	AluSx1|SINE|Alu	1740	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
97470	chr17	43766471	43766700	+	0	NA	3' UTR (NM_004090, exon 3 of 3)	3' UTR (NM_004090, exon 3 of 3)	-7794	NM_025237	50964		NM_025237	ENSG00000167941	SOST	CDD|DAND6|SOST1|VBCH	sclerostin	protein-coding
176838	chr4	102576951	102577850	+	0	NA	intron (NM_001382625, intron 8 of 24)	intron (NM_001382625, intron 8 of 24)	-74914	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
20879	chr1	202137571	202137730	+	0	NA	intron (NM_001256129, intron 3 of 5)	L1ME3F|LINE|L1	7087	NM_138795	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
191506	chr6	11263471	11263700	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-30903	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
17693	chr1	158121701	158121930	+	0	NA	Intergenic	Intergenic	18825	NR_033946	646268		NR_033946	ENSG00000231666	LINC01704	-	long intergenic non-protein coding RNA 1704	ncRNA
43743	chr11	86068151	86070630	+	0	NA	promoter-TSS (NM_001206946)	promoter-TSS (NM_001206946)	-306	NM_001206946	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
92486	chr17	8862371	8862530	+	0	NA	intron (NR_110865, intron 1 of 19)	intron (NR_110865, intron 1 of 19)	5224	NM_001010855	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
71993	chr15	25845321	25845630	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	3350	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
190603	chr5	181166271	181166430	+	0	NA	Intergenic	AluSz|SINE|Alu	11407	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
42127	chr11	67627371	67627980	+	0	NA	TTS (NM_001243750)	TTS (NM_001243750)	2262	NM_181843	254552		NM_181843	ENSG00000167799	NUDT8	-	nudix hydrolase 8	protein-coding
78765	chr15	99181621	99181700	+	0	NA	intron (NR_109947, intron 8 of 12)	intron (NR_109947, intron 8 of 12)	67921	NR_109947	64927		NM_022905	ENSG00000103852	TTC23	HCC-8	tetratricopeptide repeat domain 23	protein-coding
66662	chr14	63896151	63896450	+	0	NA	intron (NM_015180, intron 1 of 114)	L4_A_Mam|LINE|RTE-X	43296	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
210112	chr7	98013471	98013730	+	0	NA	Intergenic	Intergenic	-23496	NM_006188	4951		NM_006188	ENSG00000135175	OCM2	OCM|OM	oncomodulin 2	protein-coding
157641	chr22	46115301	46115650	+	0	NA	Intergenic	L2b|LINE|L2	1789	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
71822	chr15	22159821	22161100	+	0	NA	non-coding (NR_135694, exon 2 of 2).2	non-coding (NR_135694, exon 2 of 2).2	470	NR_135695	102724760		NR_135695		LOC102724760	-	immunoglobulin heavy variable 1/OR15-1 pseudogene	pseudo
186854	chr5	139469951	139470050	+	0	NA	Intergenic	AluJr|SINE|Alu	-1004	NM_001365197	111064649		NM_001365197	ENSG00000283288	SMIM33	-	small integral membrane protein 33	protein-coding
29787	chr10	72278671	72278830	+	0	NA	Intergenic	Intergenic	4826	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
222083	chr8	130354971	130355330	+	0	NA	intron (NM_001362924, intron 3 of 30)	AluSz|SINE|Alu	-58617	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
147640	chr20	62167771	62167950	+	0	NA	intron (NM_001301778, intron 9 of 11)	AluJo|SINE|Alu	-15168	NR_169205	26164		NM_015666	ENSG00000101181	MTG2	GTPBP5|ObgH1|dJ1005F21.2	mitochondrial ribosome associated GTPase 2	protein-coding
162189	chr3	47001471	47001830	+	0	NA	intron (NM_001365116, intron 28 of 52)	intron (NM_001365116, intron 28 of 52)	-9892	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
28830	chr10	62375251	62375780	+	0	NA	promoter-TSS (NR_104162)	promoter-TSS (NR_104162)	-388	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
96080	chr17	39605321	39606050	+	0	NA	exon (NM_006160, exon 2 of 2)	exon (NM_006160, exon 2 of 2)	2235	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
197010	chr6	53317751	53318250	+	0	NA	intron (NM_001242830, intron 1 of 6)	MIRb|SINE|MIR	19617	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
203731	chr7	1139521	1139950	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1478	NM_001134395	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
204251	chr7	2567771	2568130	+	0	NA	intron (NM_152558, intron 2 of 21)	intron (NM_152558, intron 2 of 21)	8971	NM_001287500	23288		NM_152558	ENSG00000106012	IQCE	1700028P05Rik|PAPA7	IQ motif containing E	protein-coding
138750	chr2	215311371	215312780	+	0	NA	promoter-TSS (NM_004044)	promoter-TSS (NM_004044)	16	NM_004044	471		NM_004044	ENSG00000138363	ATIC	AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding
181026	chr5	35870071	35870430	+	0	NA	intron (NM_002185, intron 3 of 7)	intron (NM_002185, intron 3 of 7)	13359	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
190953	chr6	2911721	2912280	+	0	NA	Intergenic	Intergenic	-8691	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
220385	chr8	100214351	100214650	+	0	NA	intron (NM_001374321, intron 12 of 18)	intron (NM_001374321, intron 12 of 18)	55913	NM_003114	6674		NM_003114	ENSG00000104450	SPAG1	CILD28|CT140|DNAAF13|HEL-S-268|HSD-3.8|SP75|TPIS	sperm associated antigen 1	protein-coding
78790	chr15	99440901	99441300	+	0	NA	Intergenic	Intergenic	-124317	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
234778	chrX	23908771	23908950	+	0	NA	promoter-TSS (NR_026545)	promoter-TSS (NR_026545)	854	NM_001169574	254158		NM_152761	ENSG00000165182	CXorf58	-	chromosome X open reading frame 58	protein-coding
104562	chr17	81344051	81344350	+	0	NA	Intergenic	CpG	-13526	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
163427	chr3	50571871	50572850	+	0	NA	intron (NM_001377426, intron 4 of 10)	intron (NM_001377426, intron 4 of 10)	-1333	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
35813	chr11	2216001	2216400	+	0	NA	Intergenic	Intergenic	43137	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
1657	chr1	3868551	3869000	+	0	NA	intron (NR_104222, intron 5 of 7)	intron (NR_104222, intron 5 of 7)	11299	NR_135151	1677		NM_004402	ENSG00000169598	DFFB	CAD|CPAN|DFF-40|DFF2|DFF40	DNA fragmentation factor subunit beta	protein-coding
110667	chr19	2255171	2255550	+	0	NA	intron (NM_144616, intron 1 of 6)	intron (NM_144616, intron 1 of 6)	1057	NM_144616	126306		NM_144616	ENSG00000167476	JSRP1	JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding
155886	chr22	39518301	39518500	+	0	NA	TTS (NM_001304564)	TTS (NM_001304564)	-2159	NM_001675	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
107687	chr18	49442451	49442750	+	0	NA	intron (NM_001374431, intron 1 of 16)	HAL1|LINE|L1	18045	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
237689	chrX	124363651	124364200	+	0	NA	intron (NM_002351, intron 1 of 3)	Tigger3b|DNA|TcMar-Tigger	17362	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
165673	chr3	101863671	101864000	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	14321	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
198254	chr6	99426951	99427730	+	0	NA	intron (NR_125843, intron 2 of 2)	intron (NR_125843, intron 2 of 2)	-1995	NM_001322413	25957		NM_015491	ENSG00000132424	PNISR	C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2	PNN interacting serine and arginine rich protein	protein-coding
185707	chr5	132012701	132013150	+	0	NA	promoter-TSS (NM_001205250)	promoter-TSS (NM_001205250)	-857	NM_001205250	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
39642	chr11	61568371	61568700	+	0	NA	intron (NM_001370211, intron 1 of 7)	MIRb|SINE|MIR	12337	NM_001252065	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
220559	chr8	100716301	100717380	+	0	NA	intron (NM_002568, intron 3 of 14)	intron (NM_002568, intron 3 of 14)	5248	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
211114	chr7	102515901	102516580	+	0	NA	intron (NM_001367767, intron 1 of 20)	intron (NM_001367767, intron 1 of 20)	1537	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
126482	chr2	28390001	28391200	+	0	NA	intron (NR_103831, intron 1 of 1)	CpG	-2258	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
56182	chr12	111430801	111431780	+	0	NA	intron (NM_005475, intron 2 of 7)	intron (NM_005475, intron 2 of 7)	-3572	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
88223	chr16	81872471	81872630	+	0	NA	intron (NM_002661, intron 7 of 32)	intron (NM_002661, intron 7 of 32)	93259	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
68615	chr14	89625821	89626950	+	0	NA	Intergenic	L1MD3|LINE|L1	-7220	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
76712	chr15	75903521	75904850	+	0	NA	intron (NR_037623, intron 1 of 5)	CpG	307	NR_037623	26263		NM_012170	ENSG00000167196	FBXO22	FBX22|FISTC1	F-box protein 22	protein-coding
80840	chr16	3493551	3494000	+	0	NA	3' UTR (NM_001353385, exon 3 of 3)	3' UTR (NM_001353385, exon 3 of 3)	1714	NM_001080524	646174		NM_001080524	ENSG00000215131	C16orf90	-	chromosome 16 open reading frame 90	protein-coding
49931	chr12	39692251	39692550	+	0	NA	TTS (NM_001319247)	TTS (NM_001319247)	66217	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
40359	chr11	63976651	63978000	+	0	NA	TTS (NM_004074)	TTS (NM_004074)	2705	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
130081	chr2	74496771	74497130	+	0	NA	TTS (NM_001282430)	TTS (NM_001282430)	2653	NM_001282430	85474		NM_001009812	ENSG00000179528	LBX2	LP3727	ladybird homeobox 2	protein-coding
85206	chr16	47044801	47045000	+	0	NA	Intergenic	AluJo|SINE|Alu	-71226	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
237560	chrX	120749121	120749380	+	0	NA	Intergenic	Intergenic	-119100	NM_152692	29071		NM_152692	ENSG00000171155	C1GALT1C1	AHUS8|C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS	C1GALT1 specific chaperone 1	protein-coding
153126	chr22	23715971	23716280	+	0	NA	intron (NR_024448, intron 1 of 11)	intron (NR_024448, intron 1 of 11)	1298	NR_024448	91316		NR_024448	ENSG00000228315	GUSBP11	-	GUSB pseudogene 11	pseudo
99587	chr17	50506421	50507130	+	0	NA	Intergenic	AluJo|SINE|Alu	-1664	NR_158785	84073		NM_032133	ENSG00000136449	MYCBPAP	AMAP-1|AMAP1	MYCBP associated protein	protein-coding
218184	chr8	41992071	41992500	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-59465	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
109489	chr19	819771	819930	+	0	NA	intron (NM_001270366, intron 2 of 7)	AluJb|SINE|Alu	2102	NM_024888	79948		NM_024888	ENSG00000129951	PLPPR3	LPPR3|LPR3|PRG-2|PRG2	phospholipid phosphatase related 3	protein-coding
74436	chr15	59353721	59354180	+	0	NA	intron (NM_004998, intron 1 of 27)	intron (NM_004998, intron 1 of 27)	18921	NM_004998	4643		NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
68774	chr14	91118071	91118430	+	0	NA	intron (NM_001286471, intron 1 of 13)	AluSx1|SINE|Alu	3550	NM_001286471	80017		NM_024952	ENSG00000133943	DGLUCY	C14orf159	D-glutamate cyclase	protein-coding
239487	chrY	56747851	56748030	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-206315	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
105397	chr17	82749951	82750050	+	0	NA	intron (NM_022158, intron 5 of 5)	AluSx1|SINE|Alu	-2065	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
235399	chrX	45138551	45139080	+	0	NA	Intergenic	AluJr4|SINE|Alu	62061	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
186030	chr5	134006351	134006450	+	0	NA	Intergenic	Intergenic	-1425	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
41727	chr11	66661651	66661950	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluSx|SINE|Alu	16087	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
156260	chr22	40410901	40411100	+	0	NA	TTS (NM_001350041)	TTS (NM_001350041)	40406	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
157975	chr22	49824071	49825050	+	0	NA	promoter-TSS (NM_001349942)	promoter-TSS (NM_001349942)	-229	NR_146334	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
106464	chr18	14100621	14101080	+	0	NA	3' UTR (NM_145287, exon 3 of 3)	3' UTR (NM_145287, exon 3 of 3)	31585	NM_145287	162655		NM_145287	ENSG00000175322	ZNF519	HsT2362	zinc finger protein 519	protein-coding
191702	chr6	13665771	13665930	+	0	NA	intron (NM_005493, intron 2 of 13)	L1ME2z|LINE|L1	45985	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
3324	chr1	15419771	15419930	+	0	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	9962	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
184971	chr5	113489271	113489880	+	0	NA	Intergenic	Intergenic	-1122	NM_001085377	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
38068	chr11	35186901	35187350	+	0	NA	intron (NM_001202557, intron 4 of 8)	AluSx1|SINE|Alu	24175	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
173561	chr4	10094821	10095250	+	0	NA	intron (NM_005112, intron 2 of 11)	intron (NM_005112, intron 2 of 11)	-16343	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
165774	chr3	105774501	105774930	+	0	NA	intron (NR_135806, intron 4 of 20)	intron (NR_135806, intron 4 of 20)	92876	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
229877	chr9	126497851	126497950	+	0	NA	intron (NM_033446, intron 9 of 9)	MER5A|DNA|hAT-Charlie	-87396	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
55770	chr12	108570601	108571230	+	0	NA	Intergenic	Intergenic	8319	NM_213595	23479		NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
212161	chr7	116864121	116864380	+	0	NA	intron (NM_006136, intron 1 of 9)	intron (NM_006136, intron 1 of 9)	1663	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
8805	chr1	42939771	42939930	+	0	NA	intron (NM_006516, intron 2 of 9)	AluSx|SINE|Alu	19018	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
201365	chr6	144719571	144719930	+	0	NA	intron (NM_001375323, intron 3 of 24)	L2|LINE|L2	136602	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
232336	chr9	135468921	135469180	+	0	NA	intron (NR_038969, intron 1 of 2)	LTR8|LTR|ERV1	3199	NR_038969	100506599		NR_038969	ENSG00000225361	PPP1R26-AS1	-	PPP1R26 antisense RNA 1	ncRNA
151944	chr22	19118221	19118950	+	0	NA	intron (NM_001184781, intron 1 of 9)	MIRc|SINE|MIR	3827	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
140489	chr2	233191121	233191650	+	0	NA	intron (NM_001017915, intron 22 of 26).2	THE1C|LTR|ERVL-MaLR	-60186	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
159339	chr3	13075271	13075500	+	0	NA	intron (NM_001376938, intron 2 of 15)	MIR|SINE|MIR	-1956	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
213458	chr7	138885771	138885930	+	0	NA	intron (NM_001164665, intron 10 of 19)	MER21A|LTR|ERVL	-87654	NM_020632	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
237717	chrX	125202551	125203050	+	0	NA	Intergenic	Intergenic	-117071	NM_001195272	100129520		NM_001195272	ENSG00000282815	TEX13C	-	TEX13 family member C	protein-coding
136872	chr2	188123651	188124050	+	0	NA	intron (NR_126396, intron 2 of 2)	L1PA3|LINE|L1	163841	NR_126396	104355152		NR_126396	ENSG00000231689	LINC01090	-	long intergenic non-protein coding RNA 1090	ncRNA
107719	chr18	49811701	49811900	+	0	NA	intron (NM_006111, intron 1 of 9)	MIR3|SINE|MIR	1733	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
146261	chr20	48937101	48937300	+	0	NA	intron (NM_006420, intron 1 of 38)	L2|LINE|L2	15489	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
130200	chr2	84517651	84517750	+	0	NA	intron (NM_001370, intron 1 of 76)	intron (NM_001370, intron 1 of 76)	1202	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
203812	chr7	1359101	1359500	+	0	NA	Intergenic	Intergenic	100170	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
60602	chr13	42046071	42046650	+	0	NA	intron (NM_001204504, intron 1 of 29)	intron (NM_001204504, intron 1 of 29)	-2288	NM_152910	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
104766	chr17	81701051	81701250	+	0	NA	intron (NM_004712, intron 21 of 21)	intron (NM_004712, intron 21 of 21)	-2217	NM_002949	6182		NM_002949	ENSG00000262814	MRPL12	5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12|bL12m	mitochondrial ribosomal protein L12	protein-coding
163902	chr3	52527021	52527680	+	0	NA	exon (NM_001134231, exon 10 of 14)	exon (NM_001134231, exon 10 of 14)	6507	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
171981	chr4	925771	926130	+	0	NA	intron (NM_005255, intron 1 of 27)	intron (NM_005255, intron 1 of 27)	6366	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
13877	chr1	118831951	118832050	+	0	NA	Intergenic	L1PA3|LINE|L1	156343	NM_001330677	6913		NM_152380	ENSG00000092607	TBX15	TBX14	T-box transcription factor 15	protein-coding
8507	chr1	40863601	40864030	+	0	NA	Intergenic	Intergenic	-1452	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
61498	chr13	52623651	52624150	+	0	NA	intron (NM_001011725, intron 2 of 5)	MLT1G3|LTR|ERVL-MaLR	6375	NM_001011725	144983		NM_001011724	ENSG00000139675	HNRNPA1L2	-	heterogeneous nuclear ribonucleoprotein A1 like 2	protein-coding
41915	chr11	67282351	67282450	+	0	NA	intron (NM_001619, intron 12 of 20)	intron (NM_001619, intron 12 of 20)	-6903	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
58750	chr12	132610171	132610950	+	0	NA	promoter-TSS (NM_001195520)	promoter-TSS (NM_001195520)	22	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
87804	chr16	75518571	75518930	+	0	NA	Intergenic	AluSz|SINE|Alu	17358	NM_024533	23563		NM_012126	ENSG00000135702	CHST5	I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST	carbohydrate sulfotransferase 5	protein-coding
192048	chr6	16496221	16496480	+	0	NA	intron (NM_000332, intron 6 of 8)	intron (NM_000332, intron 6 of 8)	257763	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
151022	chr21	44495201	44495400	+	0	NA	Intergenic	Intergenic	9729	NR_155204	111216286		NR_155204		LINC02575	-	long intergenic non-protein coding RNA 2575	ncRNA
184308	chr5	96882801	96883000	+	0	NA	intron (NM_001130140, intron 2 of 18)	intron (NM_001130140, intron 2 of 18)	6400	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
142618	chr20	5603371	5604030	+	0	NA	intron (NM_019593, intron 2 of 19)	intron (NM_019593, intron 2 of 19)	7306	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
125454	chr2	12127371	12128000	+	0	NA	intron (NR_110197, intron 3 of 3)	intron (NR_110197, intron 3 of 3)	-71445	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
115401	chr19	15282801	15283200	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-2549	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
196455	chr6	43511601	43511800	+	0	NA	TTS (NM_015388)	TTS (NM_015388)	-1354	NM_001271882	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
51953	chr12	53750001	53750300	+	0	NA	TTS (NR_104333)	TTS (NR_104333)	1685	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
189263	chr5	172051451	172051750	+	0	NA	intron (NM_005990, intron 18 of 18)	AluSz|SINE|Alu	-44962	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
163652	chr3	52188721	52189180	+	0	NA	Intergenic	Intergenic	-9133	NM_199166	211		NM_000688	ENSG00000023330	ALAS1	ALAS|ALAS-H|ALAS3|ALASH|MIG4	5'-aminolevulinate synthase 1	protein-coding
61105	chr13	48449551	48449650	+	0	NA	intron (NM_000321, intron 17 of 26)	AluJb|SINE|Alu	-4931	NM_005767	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
76224	chr15	73929021	73929430	+	0	NA	promoter-TSS (NR_040069)	promoter-TSS (NR_040069)	-977	NR_040068	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
178911	chr4	158722501	158724300	+	0	NA	promoter-TSS (NM_005038)	promoter-TSS (NM_005038)	-4	NM_005038	5481		NM_005038	ENSG00000171497	PPID	CYP-40|CYPD	peptidylprolyl isomerase D	protein-coding
159033	chr3	11154471	11154630	+	0	NA	promoter-TSS (NM_001098212)	promoter-TSS (NM_001098212)	57	NM_001098212	3269		NM_000861	ENSG00000196639	HRH1	H1-R|H1R|HH1R|hisH1	histamine receptor H1	protein-coding
174051	chr4	26885901	26886330	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	25274	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
36414	chr11	4094171	4096350	+	0	NA	intron (NM_001033, intron 1 of 18)	intron (NM_001033, intron 1 of 18)	461	NM_001033	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
104798	chr17	81734751	81735050	+	0	NA	Intergenic	Intergenic	22616	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
59702	chr13	29592321	29593050	+	0	NA	intron (NM_003045, intron 1 of 12)	intron (NM_003045, intron 1 of 12)	3003	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
142485	chr20	4667171	4667600	+	0	NA	Intergenic	Intergenic	-19071	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
62133	chr13	95684001	95684300	+	0	NA	intron (NM_006260, intron 1 of 11)	MSTA-int|LTR|ERVL-MaLR	7011	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
180690	chr5	21485471	21486280	+	0	NA	intron (NR_027026, intron 3 of 4)	THE1B-int|LTR|ERVL-MaLR	26395	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
28144	chr10	43444421	43445100	+	0	NA	intron (NM_001355444, intron 1 of 3)	AluJb|SINE|Alu	7649	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
95384	chr17	35892251	35893000	+	0	NA	Intergenic	Intergenic	-12265	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
111130	chr19	3270221	3270500	+	0	NA	intron (NM_021938, intron 2 of 12)	intron (NM_021938, intron 2 of 12)	45082	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
180946	chr5	34932071	34932980	+	0	NA	intron (NM_001012339, intron 1 of 11)	MLT1F|LTR|ERVL-MaLR	2966	NM_001348420	134218		NM_194283	ENSG00000168724	DNAJC21	BMFS3|DNAJA5|GS3|JJJ1	DnaJ heat shock protein family (Hsp40) member C21	protein-coding
93828	chr17	20848871	20849050	+	0	NA	Intergenic	Intergenic	-19567	NR_160710	440416		NR_104185	ENSG00000233098	CCDC144NL-AS1	-	CCDC144NL antisense RNA 1	ncRNA
14582	chr1	145188701	145189680	+	0	NA	intron (NR_156690, intron 1 of 3)	LTR71B|LTR|ERV1	-21583	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
211636	chr7	106113651	106114030	+	0	NA	Intergenic	Intergenic	-1264	NM_001381918	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
145928	chr20	46016851	46016950	+	0	NA	TTS (NM_004994)	TTS (NM_004994)	-4786	NM_001134771	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
52407	chr12	55749571	55750430	+	0	NA	3' UTR (NM_005811, exon 3 of 3)	3' UTR (NM_005811, exon 3 of 3)	6878	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
222555	chr8	140608521	140609000	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	26873	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
20167	chr1	192812271	192813000	+	0	NA	TTS (NM_002923)	TTS (NM_002923)	3596	NM_002923	5997		NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G protein signaling 2	protein-coding
210533	chr7	100233501	100234250	+	0	NA	intron (NR_166147, intron 1 of 4)	intron (NR_166147, intron 1 of 4)	14627	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
123103	chr19	51572451	51572630	+	0	NA	intron (NR_136208, intron 1 of 1)	intron (NR_136208, intron 1 of 1)	1257	NR_136208	7728		NM_007147	ENSG00000105497	ZNF175	OTK18	zinc finger protein 175	protein-coding
65754	chr14	53954571	53955130	+	0	NA	promoter-TSS (NM_130851)	promoter-TSS (NM_130851)	200	NM_001347917	652		NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
166521	chr3	114383921	114384680	+	0	NA	promoter-TSS (NM_001164342)	promoter-TSS (NM_001164342)	-658	NM_001164342	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
108265	chr18	63257621	63258080	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	61919	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
235093	chrX	40280721	40281050	+	0	NA	intron (NR_110386, intron 1 of 2)	MER41A|LTR|ERV1	17968	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
12892	chr1	110345351	110346030	+	0	NA	intron (NM_022768, intron 2 of 2)	intron (NM_022768, intron 2 of 2)	6313	NM_022768	64783		NM_014092	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding
59348	chr13	24607051	24607150	+	0	NA	Intergenic	L1PA16|LINE|L1	26892	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
128828	chr2	63056801	63057650	+	0	NA	non-coding (NR_130153, exon 5 of 5)	non-coding (NR_130153, exon 5 of 5)	6395	NM_014562	5013		NM_014562	ENSG00000115507	OTX1	-	orthodenticle homeobox 1	protein-coding
93121	chr17	17700221	17700680	+	0	NA	intron (NM_030665, intron 1 of 5)	CpG	18992	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
234495	chrX	18983701	18985180	+	0	NA	promoter-TSS (NM_000292)	promoter-TSS (NM_000292)	-326	NM_000292	5256		NM_000292	ENSG00000044446	PHKA2	GSD9A|PHK|PYK|PYKL|XLG|XLG2	phosphorylase kinase regulatory subunit alpha 2	protein-coding
12923	chr1	110646051	110646580	+	0	NA	Intergenic	Intergenic	-14875	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
45330	chr11	118215101	118215700	+	0	NA	intron (NM_001098526, intron 1 of 9)	AluJo|SINE|Alu	-2454	NM_153206	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
5417	chr1	25547571	25548200	+	0	NA	intron (NM_015627, intron 1 of 8)	L2a|LINE|L2	4279	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
14318	chr1	143874871	143875430	+	0	NA	non-coding (NR_160914, exon 3 of 3)	non-coding (NR_160914, exon 3 of 3)	407	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
183279	chr5	76490821	76491080	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-56459	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
186217	chr5	134382171	134382530	+	0	NA	intron (NM_003337, intron 4 of 5)	AluJr|SINE|Alu	10781	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
155507	chr22	38683271	38683430	+	0	NA	intron (NM_020243, intron 3 of 3)	MER1A|DNA|hAT-Charlie	1393	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
65274	chr14	49998871	50000090	+	0	NA	non-coding (NR_126500, exon 3 of 3)	non-coding (NR_126500, exon 3 of 3)	-6346	NR_126499	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
97301	chr17	43217201	43218000	+	0	NA	intron (NM_001291586, intron 8 of 8)	intron (NM_001291586, intron 8 of 8)	5725	NM_001291586	113277		NM_145041	ENSG00000184988	TMEM106A	-	transmembrane protein 106A	protein-coding
130814	chr2	87054301	87055330	+	0	NA	intron (NR_026846, intron 2 of 10)	intron (NR_026846, intron 2 of 10)	21598	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
222632	chr8	141115051	141115300	+	0	NA	Intergenic	Charlie5|DNA|hAT-Charlie	-13414	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
223061	chr8	143386551	143387250	+	0	NA	Intergenic	Intergenic	18024	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
181299	chr5	40166371	40166530	+	0	NA	Intergenic	L1PA16|LINE|L1	114159	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
208631	chr7	72988901	72989580	+	0	NA	Intergenic	AluJo|SINE|Alu	16703	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
227755	chr9	93101701	93102230	+	0	NA	intron (NR_160511, intron 1 of 4)	AluSx|SINE|Alu	5748	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
37202	chr11	14324851	14325350	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	33385	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
18577	chr1	164356621	164356700	+	0	NA	Intergenic	Intergenic	-202524	NM_002585	5087		NM_002585	ENSG00000185630	PBX1	CAKUHED	PBX homeobox 1	protein-coding
19354	chr1	173854751	173855050	+	0	NA	intron (NM_018122, intron 15 of 16)	intron (NM_018122, intron 15 of 16)	-8348	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
233156	chr9	137173371	137173980	+	0	NA	Intergenic	Intergenic	-1619	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
54088	chr12	76068551	76069200	+	0	NA	intron (NM_139207, intron 3 of 15)	intron (NM_139207, intron 3 of 15)	15810	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
209095	chr7	74875971	74876130	+	0	NA	Intergenic	Intergenic	14562	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
85723	chr16	56637201	56637530	+	0	NA	TTS (NR_036677)	TTS (NR_036677)	-1301	NM_005946	4489		NM_005946	ENSG00000205362	MT1A	MT-1A|MT-IA|MT1|MT1S|MTC	metallothionein 1A	protein-coding
97972	chr17	45253771	45254150	+	0	NA	TTS (NM_152343)	TTS (NM_152343)	6035	NR_110326	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
88706	chr16	85897451	85897550	+	0	NA	Intergenic	Intergenic	-1662	NM_002163	3394		NM_002163	ENSG00000140968	IRF8	H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8	interferon regulatory factor 8	protein-coding
134383	chr2	136325901	136326300	+	0	NA	Intergenic	LTR24B|LTR|ERV1	-207951	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
226145	chr9	63450071	63451430	+	0	NA	Intergenic	CpG	116212	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
133650	chr2	127049171	127049330	+	0	NA	intron (NM_139345, intron 15 of 15)	intron (NM_139345, intron 15 of 15)	32815	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
20369	chr1	197927871	197928230	+	0	NA	intron (NM_001370213, intron 4 of 4)	intron (NM_001370213, intron 4 of 4)	10678	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
46618	chr11	128613221	128613480	+	0	NA	Intergenic	Intergenic	-25792	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
217863	chr8	37835851	37836350	+	0	NA	intron (NM_032777, intron 13 of 18)	intron (NM_032777, intron 13 of 18)	13761	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
200883	chr6	138972801	138973200	+	0	NA	intron (NM_031922, intron 1 of 19)	intron (NM_031922, intron 1 of 19)	15253	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
189686	chr5	176411971	176412130	+	0	NA	intron (NM_007097, intron 1 of 5)	AluY|SINE|Alu	-1227	NM_001364126	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
149515	chr21	32747351	32747650	+	0	NA	intron (NM_016631, intron 11 of 17)	intron (NM_016631, intron 11 of 17)	19386	NR_038880	100506215		NR_038879	ENSG00000238197	PAXBP1-AS1	GCFC1-AS1	PAXBP1 antisense RNA 1	ncRNA
216927	chr8	22723621	22724530	+	0	NA	intron (NM_001363233, intron 6 of 6)	intron (NM_001363233, intron 6 of 6)	-30595	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
133900	chr2	130158851	130158950	+	0	NA	intron (NM_001171083, intron 8 of 16)	intron (NM_001171083, intron 8 of 16)	-13788	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
204314	chr7	2700821	2701100	+	0	NA	intron (NM_001321766, intron 2 of 6)	intron (NM_001321766, intron 2 of 6)	12758	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
106008	chr18	7953471	7954450	+	0	NA	intron (NM_001378146, intron 2 of 29)	intron (NM_001378146, intron 2 of 29)	7085	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
229908	chr9	126610601	126610800	+	0	NA	Intergenic	CpG	-3228	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
170059	chr3	182837821	182838100	+	0	NA	intron (NM_014616, intron 7 of 29)	intron (NM_014616, intron 7 of 29)	44456	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
98528	chr17	47648321	47650200	+	0	NA	promoter-TSS (NM_002265)	promoter-TSS (NM_002265)	-659	NM_002265	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
161429	chr3	41960851	41963100	+	0	NA	intron (NM_017886, intron 1 of 36)	CpG	128	NM_017886	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
22980	chr1	226084801	226085300	+	0	NA	intron (NR_146920, intron 1 of 3)	AluSg4|SINE|Alu	1475	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
31441	chr10	95833501	95833950	+	0	NA	intron (NM_001164183, intron 2 of 7)	MLT1A1|LTR|ERVL-MaLR	-74250	NM_001349008	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
35449	chr11	1454601	1455000	+	0	NA	intron (NM_001256630, intron 16 of 19)	intron (NM_001256630, intron 16 of 19)	26086	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
214165	chr7	144811801	144812000	+	0	NA	intron (NR_146934, intron 1 of 6)	intron (NR_146934, intron 1 of 6)	24040	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
34476	chr10	132462751	132463050	+	0	NA	Intergenic	Intergenic	17711	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
50988	chr12	49626171	49626980	+	0	NA	intron (NM_012272, intron 1 of 24)	intron (NM_012272, intron 1 of 24)	3014	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
85881	chr16	57051701	57052130	+	0	NA	intron (NM_001384955, intron 24 of 47)	MIRc|SINE|MIR	-40668	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
81889	chr16	11692651	11692950	+	0	NA	intron (NM_001324022, intron 6 of 10)	intron (NM_001324022, intron 6 of 10)	24345	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
169171	chr3	156680471	156680630	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	3886	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
58270	chr12	128830671	128831280	+	0	NA	Intergenic	Intergenic	-7017	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
131731	chr2	98346501	98347050	+	0	NA	intron (NM_001079878, intron 1 of 6)	CpG	319	NM_001298	1261		NM_001298	ENSG00000144191	CNGA3	ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3	cyclic nucleotide gated channel subunit alpha 3	protein-coding
27976	chr10	42755321	42755880	+	0	NA	promoter-TSS (NR_136644)	promoter-TSS (NR_136644)	-397	NR_136644	283028		NR_136644		LOC283028	-	uncharacterized LOC283028	ncRNA
86057	chr16	57581901	57582300	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-37638	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
229658	chr9	124344351	124344780	+	0	NA	intron (NM_001166169, intron 8 of 9)	intron (NM_001166169, intron 8 of 9)	-8908	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
42621	chr11	72222671	72224400	+	0	NA	Intergenic	CpG	-1232	NM_001567	3636		NM_001567	ENSG00000165458	INPPL1	OPSMD|SHIP2	inositol polyphosphate phosphatase like 1	protein-coding
112309	chr19	5889951	5890830	+	0	NA	TTS (NM_001193375)	TTS (NM_001193375)	13400	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
195994	chr6	41992421	41992880	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSg|SINE|Alu	-50802	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
78481	chr15	92907821	92908730	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	3876	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
100515	chr17	62109371	62109730	+	0	NA	Intergenic	Intergenic	-44272	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
126995	chr2	36797301	36797900	+	0	NA	intron (NM_053276, intron 12 of 15)	L2c|LINE|L2	100893	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
163535	chr3	51667701	51668400	+	0	NA	3' UTR (NM_001322257, exon 22 of 22)	3' UTR (NM_001322257, exon 22 of 22)	-3125	NM_001129884	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
119772	chr19	41303981	41305030	+	0	NA	intron (NM_144732, intron 13 of 14)	intron (NM_144732, intron 13 of 14)	-5667	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
50239	chr12	46241421	46241880	+	0	NA	intron (NM_001278388, intron 1 of 15)	intron (NM_001278388, intron 1 of 15)	24866	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
125040	chr2	9604771	9604930	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	26147	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
182975	chr5	71585121	71585380	+	0	NA	Intergenic	AluSx|SINE|Alu	-2090	NM_001363147	64087		NM_022132	ENSG00000131844	MCCC2	MCCB|MCCCbeta	methylcrotonyl-CoA carboxylase subunit 2	protein-coding
85188	chr16	46908821	46909180	+	0	NA	intron (NM_133443, intron 5 of 11)	intron (NM_133443, intron 5 of 11)	-22526	NR_145840	109623466		NR_145840		SNORD148	-	small nucleolar RNA, C/D box 148	snoRNA
193889	chr6	31595321	31595980	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2644	NM_001145466	259197		NM_147130	ENSG00000204475	NCR3	1C7|CD337|LY117|MALS|NKp30	natural cytotoxicity triggering receptor 3	protein-coding
172055	chr4	1018251	1018550	+	0	NA	intron (NM_001370296, intron 2 of 6)	intron (NM_001370296, intron 2 of 6)	5936	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
234213	chrX	12971601	12972630	+	0	NA	Intergenic	Intergenic	-2995	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
229371	chr9	121074321	121076030	+	0	NA	promoter-TSS (NM_001317163)	promoter-TSS (NM_001317163)	220	NM_001369896	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
183246	chr5	76403801	76405400	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	1315	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
42570	chr11	71934271	71934800	+	0	NA	intron (NM_001300926, intron 1 of 6)	intron (NM_001300926, intron 1 of 6)	5489	NM_018320	55298		NM_018320	ENSG00000137522	RNF121	-	ring finger protein 121	protein-coding
64590	chr14	25132601	25133030	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-82518	NM_001351940	29091		NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding
176448	chr4	89291951	89292050	+	0	NA	intron (NM_198281, intron 1 of 1)	L2c|LINE|L2	15800	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
77887	chr15	89090891	89091800	+	0	NA	intron (NM_007011, intron 2 of 14)	X8_LINE|LINE|CR1	2889	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
234982	chrX	39508171	39508580	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-116601	NR_110385	101927449		NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
47586	chr12	4807001	4808280	+	0	NA	Intergenic	LTR35B|LTR|ERV1	-1536	NM_002235	3742		NM_002235	ENSG00000151079	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel subfamily A member 6	protein-coding
43784	chr11	86274571	86274880	+	0	NA	intron (NM_001308007, intron 10 of 12)	L1MD1|LINE|L1	-3608	NR_106813	102465452		NR_106813	ENSG00000283744	MIR6755	hsa-mir-6755	microRNA 6755	ncRNA
138707	chr2	213125901	213126500	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	24237	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
167251	chr3	128555051	128555630	+	0	NA	Intergenic	CpG	20746	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
208709	chr7	73300971	73302100	+	0	NA	TTS (NM_001168347)	TTS (NM_001168347)	7291	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
144481	chr20	35620671	35621850	+	0	NA	TTS (NM_003116)	TTS (NM_003116)	5376	NM_001317931	6676		NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
170353	chr3	184565721	184566000	+	0	NA	intron (NM_004443, intron 1 of 15)	(GCAGCT)n|Simple_repeat|Simple_repeat	4075	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
154480	chr22	35628771	35628930	+	0	NA	Intergenic	Intergenic	-5496	NM_001382809	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
116242	chr19	17554301	17554500	+	0	NA	TTS (NM_001321828)	TTS (NM_001321828)	-1249	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
62880	chr13	110676001	110676200	+	0	NA	intron (NM_001352252, intron 8 of 15)	AluSp|SINE|Alu	30016	NR_147942	79587		NM_024537	ENSG00000134905	CARS2	COXPD27|cysRS	cysteinyl-tRNA synthetase 2, mitochondrial	protein-coding
19633	chr1	180178501	180179180	+	0	NA	exon (NM_002826, exon 5 of 12)	exon (NM_002826, exon 5 of 12)	23971	NM_002826	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
104284	chr17	80841751	80841850	+	0	NA	intron (NM_020761, intron 10 of 33)	CpG	-36168	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
232517	chr9	136312471	136312930	+	0	NA	Intergenic	Intergenic	-5799	NM_001291516	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
102519	chr17	75810071	75810430	+	0	NA	intron (NM_001080419, intron 2 of 15)	intron (NM_001080419, intron 2 of 15)	25411	NR_038131	85451		NM_001080419	ENSG00000132478	UNK	UNKEMPT|ZC3H5|ZC3HDC5	unk zinc finger	protein-coding
147947	chr20	62956821	62957080	+	0	NA	exon (NM_001302643, exon 3 of 14)	exon (NM_001302643, exon 3 of 14)	4241	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
238135	chrX	136708171	136708600	+	0	NA	intron (NM_004840, intron 8 of 21)	L1PA8|LINE|L1	59430	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
110305	chr19	1840351	1840780	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	7918	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
64565	chr14	24660101	24660530	+	0	NA	Intergenic	Intergenic	-26125	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
38994	chr11	47640721	47640980	+	0	NA	intron (NM_001317232, intron 1 of 11)	intron (NM_001317232, intron 1 of 11)	1709	NM_014342	23788		NM_014342	ENSG00000109919	MTCH2	HSPC032|MIMP|SLC25A50	mitochondrial carrier 2	protein-coding
112003	chr19	4974051	4974350	+	0	NA	intron (NM_001370093, intron 1 of 11)	AluY|SINE|Alu	5087	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
55250	chr12	101968771	101968950	+	0	NA	Intergenic	MIR|SINE|MIR	91280	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
2531	chr1	9720121	9720780	+	0	NA	intron (NM_001350234, intron 11 of 23)	MER20|DNA|hAT-Charlie	28983	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
195129	chr6	35673401	35674030	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	-8926	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
231052	chr9	129630301	129630700	+	0	NA	intron (NM_001286799, intron 1 of 3)	intron (NM_001286799, intron 1 of 3)	4056	NM_001286799	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
180979	chr5	35789371	35789730	+	0	NA	intron (NM_024867, intron 30 of 36)	intron (NM_024867, intron 30 of 36)	-67341	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
67876	chr14	74294271	74294430	+	0	NA	intron (NR_148467, intron 4 of 14)	AluSx1|SINE|Alu	8584	NM_020324	5826		NM_005050	ENSG00000119688	ABCD4	ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L	ATP binding cassette subfamily D member 4	protein-coding
93730	chr17	19646951	19647250	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-1050	NM_001369137	224		NM_000382	ENSG00000072210	ALDH3A2	ALDH10|FALDH|SLS	aldehyde dehydrogenase 3 family member A2	protein-coding
9047	chr1	44799321	44801400	+	0	NA	promoter-TSS (NM_004073)	promoter-TSS (NM_004073)	-17	NM_004073	1263		NM_004073	ENSG00000173846	PLK3	CNK|FNK|PLK-3|PRK	polo like kinase 3	protein-coding
91643	chr17	5437351	5437900	+	0	NA	intron (NM_001212, intron 2 of 5)	intron (NM_001212, intron 2 of 5)	1530	NM_001212	708		NM_001212	ENSG00000108561	C1QBP	COXPD33|GC1QBP|HABP1|SF2AP32|SF2p32|gC1Q-R|gC1qR|p32	complement C1q binding protein	protein-coding
166345	chr3	112972171	112972700	+	0	NA	intron (NM_138939, intron 1 of 3)	intron (NM_138939, intron 1 of 3)	2668	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
142992	chr20	20355371	20355730	+	0	NA	intron (NM_015585, intron 26 of 26)	intron (NM_015585, intron 26 of 26)	-12554	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
204087	chr7	2105371	2105530	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-16398	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
134089	chr2	131532671	131533030	+	0	NA	intron (NM_001349043, intron 5 of 7)	intron (NM_001349043, intron 5 of 7)	4962	NM_138770	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
26601	chr10	22251371	22252200	+	0	NA	promoter-TSS (NR_038921)	promoter-TSS (NR_038921)	-287	NR_038921	100130992		NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
201607	chr6	149364521	149364830	+	0	NA	intron (NM_001369506, intron 2 of 7)	intron (NM_001369506, intron 2 of 7)	-35587	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
166870	chr3	123583551	123583650	+	0	NA	intron (NM_001329784, intron 1 of 8)	MIR3|SINE|MIR	1017	NM_001329787	201562		NM_198402	ENSG00000206527	HACD2	PTPLB	3-hydroxyacyl-CoA dehydratase 2	protein-coding
131609	chr2	96894471	96894880	+	0	NA	intron (NM_001122646, intron 13 of 16)	(ACCC)n|Simple_repeat|Simple_repeat	487	NM_001172667	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
168556	chr3	146625271	146625430	+	0	NA	Intergenic	Intergenic	-19134	NM_001321245	389158		NM_001085420	ENSG00000231213	PLSCR5	-	phospholipid scramblase family member 5	protein-coding
232491	chr9	136255301	136255530	+	0	NA	intron (NM_001378188, intron 25 of 25)	intron (NM_001378188, intron 25 of 25)	-9603	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
160202	chr3	23857551	23857850	+	0	NA	intron (NM_003341, intron 3 of 5)	intron (NM_003341, intron 3 of 5)	47246	NM_001202476	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
230830	chr9	129068001	129068400	+	0	NA	non-coding (NR_138424, exon 13 of 16)	non-coding (NR_138424, exon 13 of 16)	-12911	NM_020438	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
68432	chr14	81435521	81437100	+	0	NA	intron (NM_001366849, intron 1 of 8)	CpG	155	NM_001366850	85439		NM_033104	ENSG00000140022	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
40157	chr11	62868101	62868380	+	0	NA	intron (NM_001012664, intron 1 of 9)	L1ME3G|LINE|L1	12131	NM_001012664	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
15557	chr1	150547271	150547580	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1983	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
104330	chr17	80962771	80962930	+	0	NA	intron (NM_020761, intron 32 of 33)	CpG	8363	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
131959	chr2	99485471	99486150	+	0	NA	intron (NM_001321460, intron 1 of 23)	intron (NM_001321460, intron 1 of 23)	4207	NM_001321455	51455		NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1 DNA directed polymerase	protein-coding
201957	chr6	152026371	152026730	+	0	NA	intron (NM_001385572, intron 5 of 6)	L1M8|LINE|L1	141737	NM_001347702	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
105891	chr18	3270101	3270580	+	0	NA	intron (NM_001144945, intron 1 of 3)	intron (NM_001144945, intron 1 of 3)	7621	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
68254	chr14	77024101	77024800	+	0	NA	TTS (NM_024496)	TTS (NM_024496)	4258	NM_024496	64207		NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1|NEDAMSS	interferon regulatory factor 2 binding protein like	protein-coding
83961	chr16	29154151	29154250	+	0	NA	Intergenic	L1MD2|LINE|L1	79358	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
232760	chr9	136670001	136670400	+	0	NA	promoter-TSS (NR_029695)	promoter-TSS (NR_029695)	-402	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
124262	chr19	57726901	57727980	+	0	NA	exon (NM_024833, exon 1 of 4)	exon (NM_024833, exon 1 of 4)	184	NM_001321375	79891		NM_024833	ENSG00000083814	ZNF671	-	zinc finger protein 671	protein-coding
214504	chr7	150463571	150464100	+	0	NA	intron (NM_175571, intron 1 of 4)	L1M2|LINE|L1	13205	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
224551	chr9	19378001	19378650	+	0	NA	intron (NM_001010, intron 4 of 5)	intron (NM_001010, intron 4 of 5)	1911	NM_001010	6194		NM_001010	ENSG00000137154	RPS6	S6|eS6	ribosomal protein S6	protein-coding
140738	chr2	234462051	234462930	+	0	NA	Intergenic	Intergenic	-7895	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
161355	chr3	40456671	40458050	+	0	NA	promoter-TSS (NM_003973)	promoter-TSS (NM_003973)	21	NM_001034996	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
15932	chr1	151815221	151816400	+	0	NA	intron (NM_005060, intron 4 of 10)	intron (NM_005060, intron 4 of 10)	10286	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
200216	chr6	131357321	131357530	+	0	NA	Intergenic	AluY|SINE|Alu	107021	NM_138633	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
239435	chrY	56698071	56699230	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-255605	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
212514	chr7	128740871	128741300	+	0	NA	intron (NR_074086, intron 1 of 4)	intron (NR_074086, intron 1 of 4)	1726	NM_001199672	813		NM_001219	ENSG00000128595	CALU	-	calumenin	protein-coding
214289	chr7	149069151	149069450	+	0	NA	TTS (NM_152411)	TTS (NM_152411)	21418	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
82474	chr16	17212901	17213300	+	0	NA	intron (NM_022166, intron 3 of 11)	MSTA|LTR|ERVL-MaLR	78596	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
172423	chr4	1858251	1858580	+	0	NA	Intergenic	Intergenic	-2259	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
12429	chr1	103106651	103106950	+	0	NA	intron (NR_134980, intron 1 of 67)	intron (NR_134980, intron 1 of 67)	1696	NM_080629	1301		NM_001854	ENSG00000060718	COL11A1	CO11A1|COLL6|DFNA37|STL2	collagen type XI alpha 1 chain	protein-coding
194159	chr6	32047871	32048650	+	0	NA	intron (NM_019105, intron 29 of 43).4	intron (NM_019105, intron 29 of 43).4	-2132	NM_032470	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
173114	chr4	6512401	6512570	+	0	NA	intron (NM_001206995, intron 2 of 9)	intron (NM_001206995, intron 2 of 9)	-39871	NM_001363388	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
39857	chr11	62396771	62396930	+	0	NA	Intergenic	Intergenic	-22183	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
128751	chr2	62191971	62192130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4065	NM_006577	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
102752	chr17	76269471	76269800	+	0	NA	intron (NM_182565, intron 2 of 2)	intron (NM_182565, intron 2 of 2)	4287	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
118704	chr19	38213801	38214880	+	0	NA	intron (NM_001363579, intron 9 of 11)	intron (NM_001363579, intron 9 of 11)	9882	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
142868	chr20	17676721	17677180	+	0	NA	intron (NM_004587, intron 1 of 24)	AluSz6|SINE|Alu	5292	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
107635	chr18	48948051	48950800	+	0	NA	promoter-TSS (NM_001190822)	promoter-TSS (NM_001190822)	-92	NM_001190822	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
136949	chr2	190341801	190342200	+	0	NA	Intergenic	Intergenic	-1589	NM_002194	3628		NM_002194	ENSG00000151689	INPP1	-	inositol polyphosphate-1-phosphatase	protein-coding
14296	chr1	143791001	143793100	+	0	NA	promoter-TSS (NR_111933)	promoter-TSS (NR_111933)	-445	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
206947	chr7	38246671	38246830	+	0	NA	Intergenic	Intergenic	26897	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
27551	chr10	32340251	32340880	+	0	NA	intron (NR_168508, intron 1 of 12)	AluJb|SINE|Alu	6593	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
64462	chr14	24249221	24249680	+	0	NA	exon (NM_000359, exon 15 of 15)	exon (NM_000359, exon 15 of 15)	-6776	NM_012461	26277		NM_012461	ENSG00000092330	TINF2	DKCA3|TIN2	TERF1 interacting nuclear factor 2	protein-coding
229244	chr9	115003651	115003750	+	0	NA	Intergenic	Intergenic	-73105	NM_001252290	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
157318	chr22	44615571	44616150	+	0	NA	intron (NR_044991, intron 3 of 4)	intron (NR_044991, intron 3 of 4)	9559	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
117398	chr19	19613371	19614230	+	0	NA	intron (NM_025245, intron 1 of 7)	intron (NM_025245, intron 1 of 7)	4887	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
68535	chr14	89220971	89221700	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	195898	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
109738	chr19	1100901	1102170	+	0	NA	Intergenic	MIRc|SINE|MIR	-2459	NM_002085	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
104509	chr17	81229221	81230030	+	0	NA	intron (NM_144679, intron 11 of 11)	intron (NM_144679, intron 11 of 11)	918	NR_135654	105371925		NR_135654		LOC105371925	-	uncharacterized LOC105371925	ncRNA
57877	chr12	123413801	123414000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	22625	NM_001324506	387893		NM_020382	ENSG00000183955	KMT5A	PR-Set7|PR/SET07|SET07|SET8|SETD8	lysine methyltransferase 5A	protein-coding
234507	chrX	19350201	19350400	+	0	NA	intron (NM_001173456, intron 3 of 9)	AluJb|SINE|Alu	6373	NM_001173454	5160		NM_000284	ENSG00000131828	PDHA1	E1alpha|PDHA|PDHAD|PDHCE1A|PHE1A	pyruvate dehydrogenase E1 subunit alpha 1	protein-coding
171458	chr3	196337301	196337700	+	0	NA	intron (NM_138461, intron 1 of 4)	MER50|LTR|ERV1	888	NM_138461	116211		NM_138461	ENSG00000145107	TM4SF19	OCTM4	transmembrane 4 L six family member 19	protein-coding
220441	chr8	100311501	100312130	+	0	NA	intron (NM_001280539, intron 2 of 10)	intron (NM_001280539, intron 2 of 10)	-1862	NM_183419	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
84641	chr16	30716951	30718030	+	0	NA	intron (NM_006662, intron 18 of 33)	AluJr|SINE|Alu	6953	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
178655	chr4	152457271	152457750	+	0	NA	intron (NM_001349798, intron 2 of 13)	AluY|SINE|Alu	31906	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
160028	chr3	18420451	18421080	+	0	NA	exon (NM_001322872, exon 3 of 12)	exon (NM_001322872, exon 3 of 12)	4574	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
81676	chr16	11100051	11100550	+	0	NA	intron (NM_001243403, intron 18 of 20)	intron (NM_001243403, intron 18 of 20)	155736	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
43467	chr11	78140701	78140900	+	0	NA	intron (NR_102281, intron 1 of 2)	MIRb|SINE|MIR	1007	NR_102280	100289388		NM_203432	ENSG00000246174	KCTD21-AS1	-	KCTD21 antisense RNA 1	ncRNA
129047	chr2	65059171	65059330	+	0	NA	intron (NM_015147, intron 1 of 6)	intron (NM_015147, intron 1 of 6)	2834	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
55451	chr12	104601501	104601900	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	10067	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
51459	chr12	52055121	52055550	+	0	NA	intron (NM_173157, intron 2 of 6)	intron (NM_173157, intron 2 of 6)	3893	NM_173157	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
118953	chr19	38838401	38839250	+	0	NA	intron (NM_001533, intron 9 of 12)	intron (NM_001533, intron 9 of 12)	-7031	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
106197	chr18	11577521	11577980	+	0	NA	Intergenic	Intergenic	-31808	NM_001282300	646000		NM_001282300	ENSG00000236396	SLC35G4	AMAC1L1|SLC35G4P	solute carrier family 35 member G4	protein-coding
236199	chrX	65675951	65676530	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	8586	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
145765	chr20	45321051	45321830	+	0	NA	Intergenic	AluSz|SINE|Alu	-12911	NM_003833	8785		NM_003833	ENSG00000124159	MATN4	-	matrilin 4	protein-coding
114013	chr19	10875301	10875700	+	0	NA	intron (NM_001370089, intron 1 of 14)	AluYm1|SINE|Alu	3071	NM_001370089	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
154093	chr22	30955151	30955650	+	0	NA	intron (NM_014941, intron 4 of 26)	intron (NM_014941, intron 4 of 26)	12887	NM_001303257	22880		NM_014941	ENSG00000133422	MORC2	CMT2Z|DIGFAN|ZCW3|ZCWCC1	MORC family CW-type zinc finger 2	protein-coding
65122	chr14	44917151	44917330	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-5323	NR_110050	101927418		NR_110050	ENSG00000258949	LOC101927418	-	uncharacterized LOC101927418	ncRNA
155495	chr22	38572051	38572650	+	0	NA	TTS (NR_134627)	TTS (NR_134627)	1850	NR_134627	105373031		NR_134627		LOC105373031	-	uncharacterized LOC105373031	ncRNA
115415	chr19	15297901	15298100	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-17549	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
225521	chr9	35730751	35731130	+	0	NA	intron (NM_006289, intron 1 of 56)	intron (NM_006289, intron 1 of 56)	1255	NM_006289	7094		NM_006289	ENSG00000137076	TLN1	ILWEQ|TLN|talin-1	talin 1	protein-coding
181434	chr5	40831251	40831350	+	0	NA	3' UTR (NM_000997, exon 4 of 4)	3' UTR (NM_000997, exon 4 of 4)	1435	NR_002583	619564		NR_002583	ENSG00000212296	SNORD72	HBII-240	small nucleolar RNA, C/D box 72	snoRNA
111252	chr19	3526501	3527180	+	0	NA	intron (NM_001136197, intron 4 of 10)	intron (NM_001136197, intron 4 of 10)	3884	NM_001136198	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
178905	chr4	158652771	158653180	+	0	NA	non-coding (NR_045580, exon 18 of 18)	non-coding (NR_045580, exon 18 of 18)	18912	NM_001008393	201725		NM_001008393	ENSG00000205208	C4orf46	RCDG1	chromosome 4 open reading frame 46	protein-coding
101060	chr17	64832801	64833000	+	0	NA	intron (NR_024386, intron 1 of 10)	AluY|SINE|Alu	4284	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
232203	chr9	134331551	134331850	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	5245	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
211561	chr7	105588201	105588600	+	0	NA	Intergenic	Intergenic	-6858	NM_001355527	100130771		NM_001355526	ENSG00000185055	EFCAB10	-	EF-hand calcium binding domain 10	protein-coding
79022	chr16	62371	62530	+	0	NA	intron (NM_022450, intron 7 of 17)	intron (NM_022450, intron 7 of 17)	8622	NM_024571	79622		NM_024571	ENSG00000161981	SNRNP25	C16orf33	small nuclear ribonucleoprotein U11/U12 subunit 25	protein-coding
115688	chr19	16195571	16195730	+	0	NA	Intergenic	AluSc|SINE|Alu	-2261	NM_032493	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
118603	chr19	36688751	36688850	+	0	NA	intron (NM_001322920, intron 1 of 6)	AluY|SINE|Alu	1188	NM_001322917	163081		NM_152603	ENSG00000189042	ZNF567	-	zinc finger protein 567	protein-coding
73653	chr15	44710021	44712200	+	0	NA	promoter-TSS (NM_004048)	promoter-TSS (NM_004048)	-407	NM_004048	567		NM_004048	ENSG00000166710	B2M	IMD43	beta-2-microglobulin	protein-coding
26759	chr10	22711971	22712330	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	1958	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
236042	chrX	55695301	55695780	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-22209	NM_016656	10325		NM_006064	ENSG00000083750	RRAGB	RAGB|bA465E19.1	Ras related GTP binding B	protein-coding
137131	chr2	191027451	191027830	+	0	NA	intron (NR_136318, intron 1 of 2)	MSTB1|LTR|ERVL-MaLR	6114	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
70978	chr14	104707151	104707400	+	0	NA	exon (NM_001031714, exon 8 of 22)	exon (NM_001031714, exon 8 of 22)	-16954	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
114319	chr19	11999671	11999830	+	0	NA	intron (NR_134929, intron 1 of 2)	LTR1A2|LTR|ERV1	12133	NR_134928	101928464		NR_134927	ENSG00000219665	ZNF433-AS1	-	ZNF433 and ZNF878 antisense RNA 1	ncRNA
78280	chr15	90877551	90877650	+	0	NA	non-coding (NR_168464, exon 7 of 16)	non-coding (NR_168464, exon 7 of 16)	4746	NM_001382621	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
154399	chr22	35312551	35312850	+	0	NA	intron (NR_156428, intron 1 of 13)	intron (NR_156428, intron 1 of 13)	12806	NR_156428	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
236924	chrX	96682401	96683050	+	0	NA	Intergenic	L2c|LINE|L2	-1938	NM_007309	1730		NM_006729	ENSG00000147202	DIAPH2	DIA|DIA2|DRF2|POF|POF2|POF2A	diaphanous related formin 2	protein-coding
36132	chr11	3120471	3120630	+	0	NA	exon (NM_020896, exon 6 of 22)	exon (NM_020896, exon 6 of 22)	44760	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
117366	chr19	19559421	19559680	+	0	NA	Intergenic	AluSz6|SINE|Alu	21285	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
100386	chr17	60142101	60142330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7758	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
142437	chr20	3927671	3928030	+	0	NA	non-coding (NR_136715, exon 7 of 7)	non-coding (NR_136715, exon 7 of 7)	-10287	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
129229	chr2	68248501	68249330	+	0	NA	intron (NM_000945, intron 1 of 5)	L2c|LINE|L2	3617	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
223684	chr8	144412321	144414200	+	0	NA	exon (NM_001280557, exon 2 of 4)	exon (NM_001280557, exon 2 of 4)	325	NM_001280557	55630		NM_017767	ENSG00000147804	SLC39A4	AEZ|AWMS2|ZIP4	solute carrier family 39 member 4	protein-coding
128939	chr2	64542001	64542200	+	0	NA	intron (NM_203437, intron 1 of 9)	intron (NM_203437, intron 1 of 9)	16587	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
29297	chr10	69316401	69316700	+	0	NA	intron (NM_033496, intron 1 of 17)	intron (NM_033496, intron 1 of 17)	696	NM_033496	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
94729	chr17	30736171	30736530	+	0	NA	intron (NR_024187, intron 3 of 7)	SVA_F|Retroposon|SVA	26742	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
67689	chr14	73233751	73233850	+	0	NA	Intergenic	LTR16B|LTR|ERVL	-3706	NR_158678	89932		NM_173462	ENSG00000100767	PAPLN	PPN	papilin, proteoglycan like sulfated glycoprotein	protein-coding
31240	chr10	91907371	91907530	+	0	NA	3' UTR (NM_152429, exon 2 of 2)	3' UTR (NM_152429, exon 2 of 2)	2036	NM_152429	143282		NM_152429	ENSG00000174721	FGFBP3	C10orf13|FGF-BP3	fibroblast growth factor binding protein 3	protein-coding
71563	chr14	106372971	106374000	+	0	NA	Intergenic	Intergenic	85811	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
25193	chr10	5656921	5657500	+	0	NA	intron (NR_024581, intron 1 of 4)	L1MB2|LINE|L1	9385	NR_024581	79754		NM_024701	ENSG00000196372	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
234886	chrX	30649901	30650450	+	0	NA	Intergenic	MIRb|SINE|MIR	-3184	NM_203391	2710		NM_000167	ENSG00000198814	GK	GK1|GKD	glycerol kinase	protein-coding
226673	chr9	75029971	75030230	+	0	NA	Intergenic	AluSx|SINE|Alu	-1670	NR_135282	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
145839	chr20	45836401	45837000	+	0	NA	intron (NM_152897, intron 3 of 4)	intron (NM_152897, intron 3 of 4)	2901	NM_001042633	90203		NM_033421	ENSG00000124104	SNX21	C20orf161|PP3993|SNX-L|SNXL|dJ337O18.4	sorting nexin family member 21	protein-coding
213981	chr7	142806071	142806750	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	35440	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
136588	chr2	178280221	178280500	+	0	NA	intron (NM_001201481, intron 1 of 23)	intron (NM_001201481, intron 1 of 23)	-39882	NM_145739	114880		NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
58471	chr12	132141121	132141580	+	0	NA	exon (NM_175066, exon 8 of 15)	exon (NM_175066, exon 8 of 15)	2969	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
2267	chr1	8924601	8925080	+	0	NA	Intergenic	HERVFH21-int|LTR|ERV1	-21028	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
150897	chr21	44153451	44154200	+	0	NA	Intergenic	Intergenic	6037	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
106222	chr18	11850801	11852680	+	0	NA	exon (NM_020412, exon 1 of 1)	exon (NM_020412, exon 1 of 1)	327	NM_020412	57132		NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
110817	chr19	2481321	2481580	+	0	NA	Intergenic	MIRb|SINE|MIR	5323	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
223783	chr8	144582921	144583630	+	0	NA	intron (NM_001308207, intron 3 of 11)	intron (NM_001308207, intron 3 of 11)	22420	NM_025251	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
37862	chr11	33776221	33776480	+	0	NA	TTS (NR_120550)	TTS (NR_120550)	1651	NR_120550	101928440		NR_120550	ENSG00000254508	FBXO3-DT	FBXO3-AS1	FBXO3 divergent transcript	ncRNA
74078	chr15	52668871	52669030	+	0	NA	intron (NR_169533, intron 3 of 3)	AluY|SINE|Alu	9807	NR_169545	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
70741	chr14	103383471	103383630	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1814	NM_001128919	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
202031	chr6	152984971	152985130	+	0	NA	Intergenic	Intergenic	-1471	NM_001142522	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
203662	chr7	994351	994600	+	0	NA	intron (NR_156697, intron 4 of 4)	intron (NR_156697, intron 4 of 4)	11294	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
150436	chr21	42435201	42435400	+	0	NA	intron (NM_001243467, intron 9 of 11)	intron (NM_001243467, intron 9 of 11)	31398	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
228032	chr9	95890671	95890830	+	0	NA	intron (NM_001375291, intron 2 of 18)	AluJb|SINE|Alu	-14773	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
149386	chr21	31099351	31099750	+	0	NA	Intergenic	MIRc|SINE|MIR	-61074	NM_001099219	728299		NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
112530	chr19	6518121	6519280	+	0	NA	Intergenic	AluSg|SINE|Alu	-12326	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
73334	chr15	41969701	41970600	+	0	NA	intron (NM_139265, intron 1 of 5)	intron (NM_139265, intron 1 of 5)	2407	NM_139265	30844		NM_139265	ENSG00000103966	EHD4	PAST4	EH domain containing 4	protein-coding
72854	chr15	40252101	40253730	+	0	NA	promoter-TSS (NM_001276717)	promoter-TSS (NM_001276717)	44	NR_168270	644809		NM_001039905	ENSG00000176753	PAK6-AS1	C15orf56	PAK6 antisense RNA 1	ncRNA
202304	chr6	157235551	157237050	+	0	NA	Intergenic	CpG	87219	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
218352	chr8	43054951	43057100	+	0	NA	promoter-TSS (NM_002027)	promoter-TSS (NM_002027)	-274	NR_033698	2339		NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, subunit alpha	protein-coding
6706	chr1	29202721	29203450	+	0	NA	intron (NR_146214, intron 5 of 10)	intron (NR_146214, intron 5 of 10)	-21185	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
224476	chr9	16154471	16154830	+	0	NA	Intergenic	UCON51|LTR?|LTR?	121663	NM_001364979	100129385		NM_001271829	ENSG00000205549	LINC03041	C9orf92|Em:AL513424.1	long intergenic non-protein coding RNA 3041	ncRNA
221155	chr8	119830951	119831050	+	0	NA	intron (NM_003184, intron 2 of 25)	AluSz|SINE|Alu	1841	NM_003184	6873		NM_003184	ENSG00000064313	TAF2	CIF150|MRT40|TAF2B|TAFII150	TATA-box binding protein associated factor 2	protein-coding
142896	chr20	17962521	17962980	+	0	NA	TTS (NR_003045)	TTS (NR_003045)	196	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
24370	chr1	241631901	241632300	+	0	NA	3' UTR (NM_001381853, exon 2 of 2)	3' UTR (NM_001381853, exon 2 of 2)	4094	NM_001821	1122		NM_001821	ENSG00000203668	CHML	REP2	CHM like Rab escort protein	protein-coding
6534	chr1	28576771	28576950	+	0	NA	intron (NM_017846, intron 8 of 8)	AluSp|SINE|Alu	1962	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	small nucleolar RNA, C/D box 99	snoRNA
226774	chr9	76523401	76523600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	22867	NM_001097636	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
168471	chr3	143124671	143125230	+	0	NA	TTS (NM_004267)	TTS (NM_004267)	5179	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
173636	chr4	13523371	13523530	+	0	NA	Intergenic	MIRb|SINE|MIR	7967	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
196023	chr6	42027321	42027680	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	21394	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
124424	chr19	58466671	58468200	+	0	NA	intron (NM_014347, intron 1 of 3)	CpG	355	NM_014347	25799		NM_014347	ENSG00000083812	ZNF324	ZF5128|ZNF324A	zinc finger protein 324	protein-coding
66000	chr14	58237901	58238100	+	0	NA	Intergenic	L2|LINE|L2	-6805	NR_038123	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
193510	chr6	30579951	30580250	+	0	NA	intron (NM_001090, intron 7 of 23).3	AluY|SINE|Alu	-4232	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
109390	chr19	660201	661000	+	0	NA	intron (NM_194460, intron 1 of 8)	intron (NM_194460, intron 1 of 8)	2614	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
117730	chr19	29588921	29589380	+	0	NA	Intergenic	AluJr|SINE|Alu	-17133	NM_006627	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
151208	chr21	45151851	45152700	+	0	NA	promoter-TSS (NM_001346687)	promoter-TSS (NM_001346687)	-255	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
235480	chrX	46686051	46686380	+	0	NA	intron (NM_001257291, intron 1 of 16)	intron (NM_001257291, intron 1 of 16)	72903	NM_001257291	84679		NM_032591	ENSG00000065923	SLC9A7	MRX108|NHE-7|NHE7|SLC9A6	solute carrier family 9 member A7	protein-coding
47561	chr12	4305621	4305880	+	0	NA	TTS (NM_001759)	TTS (NM_001759)	-15463	NM_020375	57103		NM_020375	ENSG00000078237	TIGAR	C12orf5|FR2BP	TP53 induced glycolysis regulatory phosphatase	protein-coding
23935	chr1	235101501	235102080	+	0	NA	Intergenic	Intergenic	26147	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
155982	chr22	39913301	39914100	+	0	NA	intron (NM_004810, intron 1 of 7)	Plat_L3|LINE|CR1	12616	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
1974	chr1	6596871	6597530	+	0	NA	intron (NM_014851, intron 2 of 3)	intron (NM_014851, intron 2 of 3)	5669	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
126726	chr2	30188321	30188950	+	0	NA	Intergenic	MER51B|LTR|ERV1	1201	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
41845	chr11	67123851	67125200	+	0	NA	intron (NM_012308, intron 2 of 20)	AluSx1|SINE|Alu	5262	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
175021	chr4	52651721	52652180	+	0	NA	intron (NM_022832, intron 1 of 8)	intron (NM_022832, intron 1 of 8)	4589	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
62406	chr13	99288121	99288700	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	18989	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
5471	chr1	25648951	25649250	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	32309	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
102880	chr17	76517271	76518080	+	0	NA	Intergenic	Intergenic	-9911	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
186503	chr5	138339721	138339980	+	0	NA	intron (NM_001350194, intron 1 of 4)	intron (NM_001350194, intron 1 of 4)	-1495	NM_001364026	995		NM_001790	ENSG00000158402	CDC25C	CDC25|PPP1R60	cell division cycle 25C	protein-coding
16143	chr1	153670521	153672580	+	0	NA	promoter-TSS (NM_001267809)	promoter-TSS (NM_001267809)	-522	NM_001267809	3608		NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
189700	chr5	176506021	176506280	+	0	NA	intron (NM_014613, intron 10 of 10)	AluY|SINE|Alu	31252	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
79392	chr16	660621	662250	+	0	NA	exon (NM_145294, exon 30 of 41)	exon (NM_145294, exon 30 of 41)	-6648	NM_001352287	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
155213	chr22	37859471	37859630	+	0	NA	intron (NM_001242923, intron 5 of 10)	AluY|SINE|Alu	10131	NM_016091	51386		NM_016091	ENSG00000100129	EIF3L	EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005	eukaryotic translation initiation factor 3 subunit L	protein-coding
7418	chr1	32956551	32957330	+	0	NA	intron (NM_001127361, intron 1 of 8)	L2c|LINE|L2	7869	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
115293	chr19	14570401	14570680	+	0	NA	intron (NM_004146, intron 1 of 2)	AluSx|SINE|Alu	1526	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
83986	chr16	29392721	29393230	+	0	NA	intron (NM_001310137, intron 3 of 7)	intron (NM_001310137, intron 3 of 7)	11570	NM_001310137	728888		NM_001310137	ENSG00000254206	NPIPB11	NPIP	nuclear pore complex interacting protein family member B11	protein-coding
46538	chr11	128466471	128468930	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	54610	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
9173	chr1	45592671	45592830	+	0	NA	intron (NM_001195193, intron 2 of 12)	AluSx1|SINE|Alu	8709	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
193767	chr6	31352701	31353800	+	0	NA	TTS (NM_005514).5	TTS (NM_005514).5	2066	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
14485	chr1	144534301	144534930	+	0	NA	Intergenic	AluSx1|SINE|Alu	17328	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
163587	chr3	51965751	51966250	+	0	NA	intron (NM_020418, intron 1 of 12)	MIR1_Amn|SINE|MIR	1454	NM_033008	57060		NM_020418	ENSG00000090097	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding
144958	chr20	37178601	37180530	+	0	NA	promoter-TSS (NM_152503)	promoter-TSS (NM_152503)	-17	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
140390	chr2	233072901	233073550	+	0	NA	intron (NM_001017915, intron 1 of 26).2	intron (NM_001017915, intron 1 of 26).2	12883	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
136976	chr2	190441171	190441330	+	0	NA	intron (NM_001375987, intron 2 of 6)	LTR33A_|LTR|ERVL	-28243	NM_001375994	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
148018	chr20	63105221	63106230	+	0	NA	Intergenic	Intergenic	-3406	NR_003245	768097		NR_003245	ENSG00000231133	HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B	ncRNA
191445	chr6	10684501	10684700	+	0	NA	intron (NR_148870, intron 2 of 3).2	intron (NR_148870, intron 2 of 3).2	10009	NM_001145020	347744		NM_001145020	ENSG00000137434	C6orf52	-	chromosome 6 open reading frame 52	protein-coding
198648	chr6	107811671	107812550	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	12203	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
23457	chr1	228487301	228488730	+	0	NA	intron (NM_001010858, intron 1 of 3).2	intron (NM_001010858, intron 1 of 3).2	633	NM_001010858	149603		NM_001010858	ENSG00000168159	RNF187	RACO-1|RACO1	ring finger protein 187	protein-coding
203916	chr7	1510171	1510330	+	0	NA	Intergenic	Intergenic	-5861	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
87264	chr16	69986551	69986800	+	0	NA	intron (NR_003610, intron 20 of 25)	intron (NR_003610, intron 20 of 25)	35562	NM_001370523	348174		NM_182619	ENSG00000157322	CLEC18A	MRCL|MRCL1|MRLP2	C-type lectin domain family 18 member A	protein-coding
61604	chr13	73228551	73228950	+	0	NA	Intergenic	Intergenic	169745	NM_001730	688		NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	KLF transcription factor 5	protein-coding
150391	chr21	42295321	42295950	+	0	NA	intron (NM_207628, intron 16 of 16)	intron (NM_207628, intron 16 of 16)	19774	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
208598	chr7	72946001	72947000	+	0	NA	3' UTR (NM_001367610, exon 16 of 16)	3' UTR (NM_001367610, exon 16 of 16)	8263	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
110311	chr19	1845101	1845300	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	3283	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
47292	chr12	1658401	1659740	+	0	NA	Intergenic	Intergenic	1310	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
46769	chr11	129860801	129861830	+	0	NA	Intergenic	Intergenic	31694	NM_006165	4798		NM_006165	ENSG00000170322	NFRKB	INO80G	nuclear factor related to kappaB binding protein	protein-coding
225870	chr9	38545271	38545430	+	0	NA	promoter-TSS (NR_047651)	promoter-TSS (NR_047651)	22	NR_047651	100289137		NR_047651	ENSG00000180071	FAM95C	-	family with sequence similarity 95 member C	ncRNA
182318	chr5	58999901	59000100	+	0	NA	promoter-TSS (NM_001197223)	promoter-TSS (NM_001197223)	-102	NM_001197223	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
144608	chr20	35822421	35822880	+	0	NA	intron (NM_016436, intron 2 of 17)	AluJo|SINE|Alu	50635	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
197474	chr6	75495971	75497030	+	0	NA	Intergenic	Intergenic	-2700	NM_001300866	27145		NM_015687	ENSG00000118407	FILIP1	FILIP|NMDF	filamin A interacting protein 1	protein-coding
12501	chr1	108051171	108051730	+	0	NA	Intergenic	Intergenic	-86270	NM_006113	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
28645	chr10	59873021	59873280	+	0	NA	intron (NM_005436, intron 1 of 8)	intron (NM_005436, intron 1 of 8)	33406	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
141088	chr2	238339871	238340050	+	0	NA	intron (NM_015650, intron 8 of 16)	intron (NM_015650, intron 8 of 16)	19416	NM_001139490	26146		NM_015650	ENSG00000204104	TRAF3IP1	CFAP116|FAP116|IFT54|MIP-T3|MIPT3|SLSN9	TRAF3 interacting protein 1	protein-coding
225345	chr9	34644971	34645380	+	0	NA	Intergenic	MIR3|SINE|MIR	-1414	NM_001258332	2592		NM_000155	ENSG00000213930	GALT	-	galactose-1-phosphate uridylyltransferase	protein-coding
161967	chr3	46283671	46284370	+	0	NA	Intergenic	HAL1|LINE|L1	41560	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
156604	chr22	41543951	41545730	+	0	NA	promoter-TSS (NM_001018050)	promoter-TSS (NM_001018050)	-234	NM_001282884	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
108189	chr18	63098101	63099230	+	0	NA	Intergenic	Intergenic	221104	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
219484	chr8	73838871	73839030	+	0	NA	intron (NR_073119, intron 1 of 5)	MER51A|LTR|ERV1	39912	NR_073120	55284		NM_018299	ENSG00000104343	UBE2W	UBC-16|UBC16	ubiquitin conjugating enzyme E2 W	protein-coding
238187	chrX	136885951	136886450	+	0	NA	Intergenic	AluY|SINE|Alu	-5420	NR_028476	27316		NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|MRXSG|MRXSH|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein X-linked	protein-coding
89437	chr16	88956571	88956930	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	-15400	NM_175931	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
217613	chr8	29975301	29975800	+	0	NA	Intergenic	Intergenic	-18202	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
197102	chr6	57094401	57094600	+	0	NA	intron (NM_015555, intron 2 of 13)	intron (NM_015555, intron 2 of 13)	4312	NM_001257273	26036		NM_015555	ENSG00000112200	ZNF451	COASTER|ZATT|dJ417I1.1	zinc finger protein 451	protein-coding
220712	chr8	101902501	101903580	+	0	NA	intron (NM_001040626, intron 3 of 6)	intron (NM_001040626, intron 3 of 6)	-81392	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
80910	chr16	3736271	3736430	+	0	NA	intron (NM_004380, intron 27 of 30)	intron (NM_004380, intron 27 of 30)	-18826	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
178532	chr4	151010671	151011150	+	0	NA	intron (NM_001367550, intron 2 of 56)	AluY|SINE|Alu	4357	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
208566	chr7	72823721	72824580	+	0	NA	intron (NM_001145440, intron 2 of 13)	intron (NM_001145440, intron 2 of 13)	4050	NM_001145440	441250		NM_001145440	ENSG00000277149	TYW1B	LINC00069|NCRNA00069|RSAFD2	tRNA-yW synthesizing protein 1 homolog B	protein-coding
101119	chr17	65024021	65024350	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluJo|SINE|Alu	31589	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
165145	chr3	71796201	71796700	+	0	NA	Intergenic	Intergenic	-11302	NM_021935	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
26279	chr10	14872151	14872450	+	0	NA	TTS (NM_016299)	TTS (NM_016299)	-6483	NR_034181	79723		NM_024670	ENSG00000152455	SUV39H2	KMT1B	SUV39H2 histone lysine methyltransferase	protein-coding
231117	chr9	129827371	129827530	+	0	NA	3' UTR (NM_016520, exon 9 of 9)	3' UTR (NM_016520, exon 9 of 9)	-3314	NM_000113	1861		NM_000113	ENSG00000136827	TOR1A	AMC5|DQ2|DYT1	torsin family 1 member A	protein-coding
224449	chr9	15425201	15425400	+	0	NA	intron (NR_161434, intron 2 of 8)	AluSx1|SINE|Alu	2424	NR_161450	6619		NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
163806	chr3	52409641	52411350	+	0	NA	promoter-TSS (NM_004656)	promoter-TSS (NM_004656)	-165	NM_001321127	51533		NM_016483	ENSG00000010318	PHF7	HSPC045|HSPC226|NYD-SP6	PHD finger protein 7	protein-coding
100501	chr17	62038801	62039000	+	0	NA	intron (NM_005121, intron 3 of 29)	AluJr|SINE|Alu	26378	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
156954	chr22	42346551	42346650	+	0	NA	Intergenic	MIRb|SINE|MIR	22608	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
210000	chr7	93036551	93037130	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	81139	NM_017654	54809		NM_017654	ENSG00000205413	SAMD9	C7orf5|DRIF1|M7MLS2|MIRAGE|NFTC|OEF1|OEF2	sterile alpha motif domain containing 9	protein-coding
122256	chr19	49034551	49034850	+	0	NA	TTS (NM_001382421)	TTS (NM_001382421)	2195	NM_033377	114335		NM_033377	ENSG00000267631	CGB1	-	chorionic gonadotropin subunit beta 1	protein-coding
75780	chr15	68792871	68793030	+	0	NA	intron (NM_006305, intron 1 of 6)	L2|LINE|L2	8975	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
130664	chr2	86221151	86221650	+	0	NA	intron (NM_001371279, intron 7 of 8)	intron (NM_001371279, intron 7 of 8)	21943	NM_016622	51318		NM_016622	ENSG00000132313	MRPL35	L35mt|MRP-L35|bL35m	mitochondrial ribosomal protein L35	protein-coding
33374	chr10	117371201	117371400	+	0	NA	intron (NM_173791, intron 1 of 4)	AluSx1|SINE|Alu	4140	NM_173791	118987		NM_173791	ENSG00000165650	PDZD8	IDDADF|PDZK8	PDZ domain containing 8	protein-coding
55110	chr12	98518731	98519300	+	0	NA	intron (NM_001307975, intron 1 of 7)	AluY|SINE|Alu	-2789	NR_027157	100128191		NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
74103	chr15	52797771	52798480	+	0	NA	Intergenic	Intergenic	-7789	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
34038	chr10	124730171	124730330	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	14128	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
35943	chr11	2481371	2481530	+	0	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	19996	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
19513	chr1	175287471	175287650	+	0	NA	Intergenic	MER57C2|LTR|ERV1	-94573	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
132833	chr2	110657671	110658100	+	0	NA	TTS (NR_132975)	TTS (NR_132975)	364	NR_132975	106635550		NR_132975		SNORD132	-	small nucleolar RNA, C/D box 132	snoRNA
62355	chr13	99204551	99205930	+	0	NA	intron (NR_026644, intron 1 of 8)	intron (NR_026644, intron 1 of 8)	4386	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
63835	chr14	21503221	21503980	+	0	NA	intron (NM_019852, intron 2 of 10)	intron (NM_019852, intron 2 of 10)	7740	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
48904	chr12	12559901	12560100	+	0	NA	intron (NM_030640, intron 1 of 6)	intron (NM_030640, intron 1 of 6)	2863	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
190151	chr5	178116001	178117450	+	0	NA	intron (NM_015111, intron 1 of 4)	intron (NM_015111, intron 1 of 4)	3193	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
217714	chr8	30155171	30157200	+	0	NA	promoter-TSS (NM_006571)	promoter-TSS (NM_006571)	-184	NM_006571	10671		NM_006571	ENSG00000104671	DCTN6	WS-3|WS3|p27	dynactin subunit 6	protein-coding
30289	chr10	75218801	75219000	+	0	NA	intron (NM_001324087, intron 6 of 11)	intron (NM_001324087, intron 6 of 11)	8746	NM_001184783	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
92785	chr17	15849121	15849400	+	0	NA	Intergenic	Intergenic	-31518	NR_110839	101928567		NR_110839		LINC02087	-	long intergenic non-protein coding RNA 2087	ncRNA
40217	chr11	63534551	63536100	+	0	NA	Intergenic	Intergenic	-1483	NM_004585	5920		NM_004585	ENSG00000133321	PLAAT4	HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3	phospholipase A and acyltransferase 4	protein-coding
159500	chr3	14319751	14319930	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	32728	NR_110135	101927565		NR_110135	ENSG00000251576	LINC01267	-	long intergenic non-protein coding RNA 1267	ncRNA
156703	chr22	41687951	41689450	+	0	NA	promoter-TSS (NR_160905)	promoter-TSS (NR_160905)	167	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
33	chr1	183001	184100	+	0	NA	intron (NR_148357, intron 2 of 2)	intron (NR_148357, intron 2 of 2)	1162	NR_148357	102725121		NR_148357		DDX11L17	-	DEAD/H-box helicase 11 like 17 (pseudogene)	pseudo
54543	chr12	92139051	92139250	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	2563	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
78466	chr15	92889101	92889400	+	0	NA	intron (NR_037600, intron 3 of 4)	AluSx3|SINE|Alu	5954	NR_037602	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
84010	chr16	29460401	29461300	+	0	NA	intron (NM_001017390, intron 1 of 7).2	MER5B|DNA|hAT-Charlie	937	NM_001017390	445329		NM_001017389	ENSG00000213648	SULT1A4	HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|STM|TL-PST	sulfotransferase family 1A member 4	protein-coding
196329	chr6	43163651	43163950	+	0	NA	Intergenic	AluSc|SINE|Alu	-7469	NM_003131	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
68114	chr14	75459101	75459500	+	0	NA	intron (NM_001135048, intron 2 of 3)	intron (NM_001135048, intron 2 of 3)	27166	NM_001135049	122953		NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
85866	chr16	57035921	57036610	+	0	NA	intron (NM_001384955, intron 14 of 47)	intron (NM_001384955, intron 14 of 47)	46708	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
204035	chr7	1934001	1934200	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	6471	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
180842	chr5	32581101	32581950	+	0	NA	Intergenic	Intergenic	-4032	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
205433	chr7	16891451	16891750	+	0	NA	Intergenic	Intergenic	-9617	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
130763	chr2	86822721	86823600	+	0	NA	intron (NM_172101, intron 5 of 6)	L1MB3|LINE|L1	-14764	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
149501	chr21	32600751	32601400	+	0	NA	TTS (NM_001350335)	TTS (NM_001350335)	11302	NR_146639	110091775		NM_001350338	ENSG00000265590	CFAP298-TCP10L	C21orf59-TCP10L|C21orf77|LINC00846	CFAP298-TCP10L readthrough	protein-coding
198960	chr6	110880001	110880200	+	0	NA	intron (NM_001287216, intron 1 of 4)	AluSz|SINE|Alu	5316	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
207261	chr7	43905051	43905400	+	0	NA	intron (NM_001077664, intron 1 of 5)	intron (NM_001077664, intron 1 of 5)	1371	NM_001204871	100534592		NM_001204871	ENSG00000270617	URGCP-MRPS24	-	URGCP-MRPS24 readthrough	protein-coding
76172	chr15	72967521	72967980	+	0	NA	Intergenic	Intergenic	-84713	NM_002499	4756		NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
216469	chr8	19699921	19700780	+	0	NA	intron (NM_001354476, intron 1 of 8)	intron (NM_001354476, intron 1 of 8)	-17589	NR_024040	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
210281	chr7	99420401	99421000	+	0	NA	intron (NM_015545, intron 7 of 7)	AluSz|SINE|Alu	11528	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
82732	chr16	21277901	21278400	+	0	NA	exon (NM_001888, exon 3 of 10)	exon (NM_001888, exon 3 of 10)	140	NM_001376256	1428		NM_001888	ENSG00000103316	CRYM	DFNA40|THBP	crystallin mu	protein-coding
30938	chr10	87321771	87321930	+	0	NA	intron (NR_024397, intron 3 of 5)	L1MC2|LINE|L1	-20561	NR_029408	439994		NR_029408	ENSG00000224914	LINC00863	-	long intergenic non-protein coding RNA 863	ncRNA
107552	chr18	48797851	48798150	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	127400	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
89955	chr16	89764421	89765380	+	0	NA	exon (NM_000135, exon 28 of 43)	exon (NM_000135, exon 28 of 43)	43363	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
198305	chr6	100466801	100467430	+	0	NA	Intergenic	CpG	-2194	NM_005068	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
22585	chr1	223081271	223081630	+	0	NA	Intergenic	Intergenic	61798	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
46947	chr11	134409871	134410030	+	0	NA	intron (NM_054025, intron 1 of 5)	intron (NM_054025, intron 1 of 5)	1968	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
221613	chr8	125606251	125606800	+	0	NA	Intergenic	L2b|LINE|L2	174316	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
187875	chr5	148482751	148483150	+	0	NA	non-coding (NR_104445, exon 8 of 8)	non-coding (NR_104445, exon 8 of 8)	98992	NM_030793	81545		NM_030793	ENSG00000145868	FBXO38	Fbx38|HMN2D|HMND6|MOKA|SP329	F-box protein 38	protein-coding
225958	chr9	41109221	41110000	+	0	NA	promoter-TSS (NR_147037)	promoter-TSS (NR_147037)	-680	NR_147037	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
24860	chr10	608171	608680	+	0	NA	intron (NM_014974, intron 1 of 36)	(AC)n|Simple_repeat|Simple_repeat	-20139	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
23610	chr1	230145421	230145680	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	78312	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
220831	chr8	102858771	102859180	+	0	NA	intron (NM_148174, intron 1 of 11)	intron (NM_148174, intron 1 of 11)	5188	NM_001301668	51582		NM_015878	ENSG00000155096	AZIN1	AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
199694	chr6	123802651	123803280	+	0	NA	promoter-TSS (NM_001300737)	promoter-TSS (NM_001300737)	-881	NM_001300737	154215		NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	sodium/potassium transporting ATPase interacting 2	protein-coding
187340	chr5	141672051	141672600	+	0	NA	intron (NM_022481, intron 9 of 32)	intron (NM_022481, intron 9 of 32)	9905	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
10459	chr1	66302601	66303300	+	0	NA	intron (NM_001037340, intron 5 of 14)	L2c|LINE|L2	-29158	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
222490	chr8	140455671	140455830	+	0	NA	intron (NM_031466, intron 1 of 22)	L1MB7|LINE|L1	1994	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
142525	chr20	4975621	4975880	+	0	NA	intron (NM_203327, intron 1 of 16)	intron (NM_203327, intron 1 of 16)	25760	NM_005116	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
154871	chr22	37135101	37135300	+	0	NA	intron (NM_000878, intron 8 of 9)	intron (NM_000878, intron 8 of 9)	14716	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
220516	chr8	100676121	100676380	+	0	NA	Intergenic	L1MB8|LINE|L1	-26585	NM_152628	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
206996	chr7	38342201	38342580	+	0	NA	intron (NR_040085, intron 1 of 3)	intron (NR_040085, intron 1 of 3)	813	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
178736	chr4	153083271	153083850	+	0	NA	Intergenic	Intergenic	-68603	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
208762	chr7	73537771	73537950	+	0	NA	intron (NM_001707, intron 5 of 5)	AluSx1|SINE|Alu	-15567	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
222761	chr8	141492951	141493050	+	0	NA	intron (NM_207414, intron 4 of 29)	intron (NM_207414, intron 4 of 29)	14229	NR_160399	389690		NM_207414	ENSG00000226807	MROH5	-	maestro heat like repeat family member 5 (gene/pseudogene)	protein-coding
225608	chr9	36167971	36168130	+	0	NA	Intergenic	AluSp|SINE|Alu	-1338	NM_005893	881		NM_005893	ENSG00000185972	CCIN	BTBD20|KBTBD14	calicin	protein-coding
65304	chr14	50083001	50084050	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	21518	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
181844	chr5	53030701	53030900	+	0	NA	intron (NR_073104, intron 2 of 28)	intron (NR_073104, intron 2 of 28)	41448	NM_002203	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
138578	chr2	207766271	207766430	+	0	NA	3' UTR (NM_003468, exon 2 of 2)	3' UTR (NM_003468, exon 2 of 2)	3556	NM_003468	7855		NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5|MCOPCB11	frizzled class receptor 5	protein-coding
29464	chr10	70494551	70495280	+	0	NA	intron (NM_014431, intron 1 of 19)	L1ME4b|LINE|L1	16148	NM_014431	27143		NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	phosphatase domain containing paladin 1	protein-coding
144870	chr20	36909571	36910150	+	0	NA	intron (NM_001363733, intron 11 of 15)	intron (NM_001363733, intron 11 of 15)	33722	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
123378	chr19	53904701	53905450	+	0	NA	intron (NM_001316329, intron 16 of 18)	MIRc|SINE|MIR	-4203	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
97271	chr17	43021101	43021670	+	0	NA	intron (NM_006373, intron 1 of 5)	intron (NM_006373, intron 1 of 5)	1000	NM_006373	10493		NM_006373	ENSG00000108828	VAT1	VATI	vesicle amine transport 1	protein-coding
24401	chr1	243114221	243114480	+	0	NA	Intergenic	Intergenic	-12606	NR_029401	731275		NR_029401	ENSG00000291217	LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
24895	chr10	1036201	1038100	+	0	NA	intron (NR_027709, intron 4 of 4)	L1ME3|LINE|L1	-11291	NM_033261	91734		NM_033261	ENSG00000148377	IDI2	IPPI2	isopentenyl-diphosphate delta isomerase 2	protein-coding
144345	chr20	34997071	34997780	+	0	NA	exon (NM_020884, exon 32 of 45)	exon (NM_020884, exon 32 of 45)	-6953	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
37372	chr11	16740871	16742080	+	0	NA	intron (NM_014267, intron 1 of 4)	intron (NM_014267, intron 1 of 4)	2828	NM_014267	10944		NM_014267	ENSG00000110696	C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
228683	chr9	107487371	107487930	+	0	NA	exon (NM_001314052, exon 3 of 4)	exon (NM_001314052, exon 3 of 4)	2119	NM_004235	9314		NM_004235	ENSG00000136826	KLF4	EZF|GKLF	KLF transcription factor 4	protein-coding
234550	chrX	19723171	19723330	+	0	NA	intron (NM_001353892, intron 3 of 17)	L1ME4b|LINE|L1	-52251	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
74735	chr15	63199871	63200030	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	10344	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
25016	chr10	3472401	3472830	+	0	NA	intron (NR_155743, intron 3 of 4)	intron (NR_155743, intron 3 of 4)	30223	NR_155743	101927880		NR_155743	ENSG00000233321	LINC02669	-	long intergenic non-protein coding RNA 2669	ncRNA
37901	chr11	34066771	34066930	+	0	NA	intron (NM_203364, intron 2 of 17)	AluSg|SINE|Alu	15119	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
209544	chr7	77202601	77203000	+	0	NA	intron (NM_020879, intron 2 of 18)	MIRb|SINE|MIR	-2981	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
185986	chr5	133457651	133458150	+	0	NA	intron (NM_015082, intron 3 of 15)	intron (NM_015082, intron 3 of 15)	-30194	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
91185	chr17	3870821	3871480	+	0	NA	intron (NM_172207, intron 13 of 15)	intron (NM_172207, intron 13 of 15)	19593	NM_172206	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
59352	chr13	24614971	24615330	+	0	NA	Intergenic	Intergenic	34942	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
86240	chr16	58199171	58199480	+	0	NA	Intergenic	MIR|SINE|MIR	-1219	NM_001896	1459		NM_001896	ENSG00000070770	CSNK2A2	CK2A2|CK2alpha'|CSNK2A1	casein kinase 2 alpha 2	protein-coding
124209	chr19	56671321	56671980	+	0	NA	5' UTR (NM_001005850, exon 1 of 2)	5' UTR (NM_001005850, exon 1 of 2)	107	NM_001005850	90485		NM_001005850	ENSG00000127903	ZNF835	BC37295_3	zinc finger protein 835	protein-coding
199793	chr6	127118171	127118330	+	0	NA	promoter-TSS (NM_032784)	promoter-TSS (NM_032784)	-421	NM_032784	84870		NM_032784	ENSG00000146374	RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
196590	chr6	44218351	44218450	+	0	NA	TTS (NM_001347931)	TTS (NM_001347931)	-1215	NM_001304465	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
221714	chr8	127207971	127208350	+	0	NA	non-coding (NR_108049, exon 2 of 2)	non-coding (NR_108049, exon 2 of 2)	-10533	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
212963	chr7	130959721	130960700	+	0	NA	intron (NR_109852, intron 4 of 5)	intron (NR_109852, intron 4 of 5)	46746	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
239370	chrY	20785001	20785400	+	0	NA	Intergenic	L1ME3|LINE|L1	29092	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
129096	chr2	65121021	65121530	+	0	NA	intron (NM_004161, intron 1 of 5)	intron (NM_004161, intron 1 of 5)	8831	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
206640	chr7	36148851	36149150	+	0	NA	Intergenic	Intergenic	-4254	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
81132	chr16	4394071	4394900	+	0	NA	intron (NM_001351729, intron 7 of 27)	intron (NM_001351729, intron 7 of 27)	21412	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
184173	chr5	95809971	95810600	+	0	NA	Intergenic	AluSz|SINE|Alu	12441	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
205221	chr7	7966621	7966950	+	0	NA	intron (NR_110018, intron 1 of 4)	AluJb|SINE|Alu	1967	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
82536	chr16	18378071	18378230	+	0	NA	intron (NR_146331, intron 26 of 37)	AluY|SINE|Alu	1260	NR_107060	102465908		NR_107060	ENSG00000277698	MIR6770-2	hsa-mir-6770-2	microRNA 6770-2	ncRNA
106146	chr18	9613901	9615500	+	0	NA	promoter-TSS (NM_005134)	promoter-TSS (NM_005134)	-107	NR_110773	101927323		NR_110773	ENSG00000263627	PPP4R1-AS1	-	PPP4R1 antisense RNA 1	ncRNA
166481	chr3	114292571	114293050	+	0	NA	Intergenic	Intergenic	-1218	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
228784	chr9	111621901	111622180	+	0	NA	Intergenic	Intergenic	-8487	NR_034087	652972		NM_001037807	ENSG00000290837	LRRC37A5P	C9orf29	leucine rich repeat containing 37 member A5, pseudogene	pseudo
131662	chr2	97660901	97661680	+	0	NA	intron (NM_005735, intron 2 of 10)	intron (NM_005735, intron 2 of 10)	2754	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
58300	chr12	130867571	130867730	+	0	NA	Intergenic	AluJr|SINE|Alu	-4344	NM_001300796	5901		NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
160269	chr3	25780421	25780880	+	0	NA	intron (NM_001145294, intron 1 of 11)	AluJo|SINE|Alu	2793	NM_018297	55768		NM_018297	ENSG00000151092	NGLY1	CDDG|CDG1V|PNG-1|PNG1|PNGase	N-glycanase 1	protein-coding
95012	chr17	32385801	32386280	+	0	NA	Intergenic	AluSg|SINE|Alu	35883	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
107756	chr18	50372851	50372950	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-2146	NM_145060	220134		NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
121730	chr19	47718521	47718980	+	0	NA	intron (NM_014601, intron 3 of 5)	MSR1|Satellite|Satellite	5328	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
8966	chr1	44519401	44519630	+	0	NA	intron (NM_001319957, intron 1 of 13)	L2c|LINE|L2	-25978	NR_049849	100847089		NR_049849	ENSG00000263381	MIR5584	-	microRNA 5584	ncRNA
98394	chr17	46559071	46559880	+	0	NA	intron (NM_001039083, intron 3 of 3).2	intron (NM_001039083, intron 3 of 3).2	20216	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
60095	chr13	36432371	36432530	+	0	NA	promoter-TSS (NM_003914)	promoter-TSS (NM_003914)	-45	NM_003914	8900		NM_003914	ENSG00000133101	CCNA1	CT146	cyclin A1	protein-coding
150846	chr21	44060651	44061300	+	0	NA	intron (NM_003274, intron 6 of 22)	AluSc|SINE|Alu	-13349	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
113703	chr19	10424911	10425950	+	0	NA	intron (NM_001111307, intron 1 of 14)	MIRc|SINE|MIR	4892	NM_001111307	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
472	chr1	1152351	1152880	+	0	NA	Intergenic	Intergenic	-14489	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
83591	chr16	28168051	28168430	+	0	NA	intron (NM_001270940, intron 6 of 24)	AluJo|SINE|Alu	43725	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
55047	chr12	96401201	96402180	+	0	NA	Intergenic	Intergenic	-1251	NM_001170464	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
34255	chr10	131312571	131312800	+	0	NA	promoter-TSS (NM_174937)	promoter-TSS (NM_174937)	-964	NM_174937	256536		NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1 like	protein-coding
178113	chr4	141219621	141219900	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-1135	NM_014487	27309		NM_014487	ENSG00000109445	ZNF330	HSA6591|NOA36	zinc finger protein 330	protein-coding
109529	chr19	855071	855300	+	0	NA	intron (NM_001972, intron 3 of 4)	AluJb|SINE|Alu	2882	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
2153	chr1	8409071	8409850	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	14372	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
90682	chr17	1721971	1722300	+	0	NA	intron (NM_001163673, intron 1 of 9)	intron (NM_001163673, intron 1 of 9)	-2569	NM_001163811	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
36676	chr11	8328801	8329100	+	0	NA	Intergenic	Intergenic	-60163	NM_001270428	4004		NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
173755	chr4	16230521	16230830	+	0	NA	intron (NR_027697, intron 1 of 2)	intron (NR_027697, intron 1 of 2)	4012	NR_027696	202020		NM_152684	ENSG00000263327	TAPT1-AS1	-	TAPT1 antisense RNA 1 (head to head)	ncRNA
129068	chr2	65078701	65079100	+	0	NA	intron (NM_015147, intron 5 of 6)	intron (NM_015147, intron 5 of 6)	22484	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
177061	chr4	108034051	108034150	+	0	NA	intron (NM_001184705, intron 8 of 8)	intron (NM_001184705, intron 8 of 8)	29436	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
60060	chr13	33228521	33228900	+	0	NA	intron (NM_001243476, intron 5 of 17)	intron (NM_001243476, intron 5 of 17)	-22660	NM_001243474	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
57367	chr12	121787701	121788700	+	0	NA	intron (NM_019034, intron 2 of 4)	MIR|SINE|MIR	5488	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
135041	chr2	156329011	156329700	+	0	NA	exon (NM_006186, exon 3 of 8)	exon (NM_006186, exon 3 of 8)	3366	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
162265	chr3	47296601	47296800	+	0	NA	intron (NM_025010, intron 1 of 9)	L2c|LINE|L2	13756	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
126522	chr2	28453601	28453880	+	0	NA	Intergenic	Intergenic	-42320	NM_153021	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
147892	chr20	62880401	62881250	+	0	NA	exon (NM_033081, exon 16 of 16)	exon (NM_033081, exon 16 of 16)	2078	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
171183	chr3	195676351	195676450	+	0	NA	intron (NR_003265, intron 10 of 14)	intron (NR_003265, intron 10 of 14)	-12098	NR_122105	440993		NM_001013714		MIR570HG	LINC00969	MIR570 host gene	ncRNA
80635	chr16	2989901	2990100	+	0	NA	intron (NR_033861, intron 1 of 4)	intron (NR_033861, intron 1 of 4)	946	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
30547	chr10	79651671	79651830	+	0	NA	intron (NR_134315, intron 1 of 3)	L1ME1|LINE|L1	11435	NR_134315	105378385		NR_134315	ENSG00000226676	LINC02679	-	long intergenic non-protein coding RNA 2679	ncRNA
39658	chr11	61638151	61638730	+	0	NA	non-coding (NR_002775, exon 5 of 5)	non-coding (NR_002775, exon 5 of 5)	23404	NR_002775	113157		NR_002775	ENSG00000293352	RPLP0P2	RPLP0L2|RPLP0_3_1146	ribosomal protein lateral stalk subunit P0 pseudogene 2	pseudo
174235	chr4	37887901	37888100	+	0	NA	Intergenic	Intergenic	-3084	NM_015173	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
83262	chr16	23953271	23953630	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	117467	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
70824	chr14	103613501	103613700	+	0	NA	Intergenic	AluSx|SINE|Alu	-15588	NM_005552	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
64995	chr14	38088971	38089530	+	0	NA	Intergenic	L5|LINE|RTE-X	-118654	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
42975	chr11	73776771	73776930	+	0	NA	Intergenic	AluSx|SINE|Alu	-11024	NR_134658	51642		NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48|mL48	mitochondrial ribosomal protein L48	protein-coding
113604	chr19	10294271	10294730	+	0	NA	exon (NM_003259, exon 9 of 11)	exon (NM_003259, exon 9 of 11)	4548	NM_003259	7087		NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	intercellular adhesion molecule 5	protein-coding
44418	chr11	104120621	104120900	+	0	NA	intron (NM_025208, intron 1 of 6)	intron (NM_025208, intron 1 of 6)	43387	NM_033135	80310		NM_025208	ENSG00000170962	PDGFD	IEGF|MSTP036|SCDGF-B|SCDGFB	platelet derived growth factor D	protein-coding
215374	chr7	157407351	157407850	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	-58631	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
123651	chr19	54756121	54756780	+	0	NA	promoter-TSS (NR_110738)	promoter-TSS (NR_110738)	-121	NR_110738	101928804		NR_110737		LOC101928804	-	uncharacterized LOC101928804	ncRNA
206968	chr7	38305521	38306180	+	0	NA	Intergenic	LTR81B|LTR|Gypsy	-32203	NM_001003806	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
112362	chr19	5967771	5968630	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	9940	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
233060	chr9	137075151	137076000	+	0	NA	Intergenic	MER41A|LTR|ERV1	-1942	NM_207309	91373		NM_207309	ENSG00000197355	UAP1L1	-	UDP-N-acetylglucosamine pyrophosphorylase 1 like 1	protein-coding
20686	chr1	200530451	200531430	+	0	NA	Intergenic	Intergenic	87898	NM_001305792	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
40709	chr11	64791151	64791450	+	0	NA	intron (NM_004579, intron 27 of 31)	intron (NM_004579, intron 27 of 31)	11914	NM_004579	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
38564	chr11	45965851	45966180	+	0	NA	intron (NR_147890, intron 8 of 18)	L2c|LINE|L2	43359	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
142847	chr20	17609771	17609930	+	0	NA	TTS (NM_001011546)	TTS (NM_001011546)	39775	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
15430	chr1	150280501	150280700	+	0	NA	intron (NM_024579, intron 5 of 5)	intron (NM_024579, intron 5 of 5)	-1954	NM_001300840	148523		NM_144697	ENSG00000159208	CIART	C1orf51|CHRONO|GM129	circadian associated repressor of transcription	protein-coding
69507	chr14	95683871	95684030	+	0	NA	Intergenic	Intergenic	-2476	NM_004918	9623		NM_004918	ENSG00000213231	TCL1B	SYN-1|TML1	TCL1 family AKT coactivator B	protein-coding
57678	chr12	122836301	122837530	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	1458	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
9213	chr1	45641851	45642350	+	0	NA	intron (NM_021639, intron 7 of 12)	AluSz6|SINE|Alu	4585	NR_026768	728963		NR_026768		RPS15AP10	RPS15A_4_42	ribosomal protein S15a pseudogene 10	pseudo
140529	chr2	233239001	233239550	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-12296	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
793	chr1	1542151	1542700	+	0	NA	intron (NM_014188, intron 4 of 4)	intron (NM_014188, intron 4 of 4)	-1801	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
64960	chr14	36194651	36194750	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-18049	NR_049735	100886964		NR_049735	ENSG00000259104	PTCSC3	-	papillary thyroid carcinoma susceptibility candidate 3	ncRNA
43294	chr11	76161171	76161630	+	0	NA	Intergenic	Intergenic	45102	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
123901	chr19	55338471	55340500	+	0	NA	promoter-TSS (NM_032701)	promoter-TSS (NM_032701)	-391	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
113954	chr19	10764021	10764280	+	0	NA	intron (NM_001005362, intron 2 of 19)	intron (NM_001005362, intron 2 of 19)	-16104	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
145449	chr20	43558151	43558250	+	0	NA	promoter-TSS (NM_170693)	promoter-TSS (NM_170693)	-827	NM_170693	10110		NM_016276	ENSG00000101049	SGK2	H-SGK2|dJ138B7.2	serum/glucocorticoid regulated kinase 2	protein-coding
27237	chr10	29482701	29483280	+	0	NA	non-coding (NR_110920, exon 4 of 4)	non-coding (NR_110920, exon 4 of 4)	62107	NR_030335	693189		NR_030335	ENSG00000207612	MIR604	MIRN604|hsa-mir-604	microRNA 604	ncRNA
84147	chr16	29741351	29742050	+	0	NA	TTS (NM_175900)	TTS (NM_175900)	4290	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
89089	chr16	88477451	88478700	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	9157	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
44850	chr11	114137351	114137450	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	74189	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
160137	chr3	20058501	20058900	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	18254	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
142341	chr20	3741771	3742130	+	0	NA	intron (NM_001197327, intron 3 of 12)	intron (NM_001197327, intron 3 of 12)	9265	NM_001197327	116835		NM_052970	ENSG00000132622	HSPA12B	C20orf60	heat shock protein family A (Hsp70) member 12B	protein-coding
224765	chr9	21986871	21987380	+	0	NA	intron (NM_001363763, intron 1 of 2)	intron (NM_001363763, intron 1 of 2)	7267	NM_058195	1029		NM_000077	ENSG00000147889	CDKN2A	ARF|CAI2|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
4894	chr1	23798471	23798900	+	0	NA	exon (NM_001008216, exon 4 of 12)	exon (NM_001008216, exon 4 of 12)	862	NM_001127621	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
85376	chr16	50276771	50277030	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	10349	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
154520	chr22	36052671	36052850	+	0	NA	Intergenic	Intergenic	-23936	NM_001082579	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
84349	chr16	30205321	30206680	+	0	NA	non-coding (NR_002556, exon 2 of 5).2	non-coding (NR_002556, exon 2 of 5).2	927	NR_002556	388242		NR_002556	ENSG00000290678	LOC388242	-	SAGA complex associated factor 29 pseudogene	pseudo
53693	chr12	68494001	68494200	+	0	NA	Intergenic	MIRb|SINE|MIR	-42616	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
115326	chr19	15111151	15111880	+	0	NA	intron (NM_033025, intron 5 of 7)	intron (NM_033025, intron 5 of 7)	4114	NM_001300910	85360		NM_033025	ENSG00000105137	SYDE1	7h3|SYD1	synapse defective Rho GTPase homolog 1	protein-coding
106179	chr18	10525401	10527030	+	0	NA	intron (NM_003826, intron 1 of 11)	CpG	188	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
56839	chr12	120239721	120240900	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	9853	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
32009	chr10	100993701	100994450	+	0	NA	non-coding (NR_160739, exon 5 of 5)	non-coding (NR_160739, exon 5 of 5)	-2996	NM_032429	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
236177	chrX	65596201	65597250	+	0	NA	Intergenic	MIRc|SINE|MIR	-44304	NR_033742	83957		NM_032033	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
88405	chr16	84650801	84651000	+	0	NA	exon (NM_001303451, exon 2 of 4)	exon (NM_001303451, exon 2 of 4)	2389	NM_024731	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
49232	chr12	19243351	19243650	+	0	NA	intron (NM_001256787, intron 1 of 25)	intron (NM_001256787, intron 1 of 25)	38175	NM_001256787	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
88891	chr16	87739701	87739900	+	0	NA	intron (NM_001351937, intron 5 of 11)	L1MB1|LINE|L1	26186	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
121366	chr19	46852871	46853030	+	0	NA	Intergenic	Intergenic	-2104	NM_001301078	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
103117	chr17	77375801	77376930	+	0	NA	5' UTR (NM_001113494, exon 1 of 11)	5' UTR (NM_001113494, exon 1 of 11)	282	NM_001113494	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
191835	chr6	14865651	14866580	+	0	NA	Intergenic	Intergenic	-379954	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
233119	chr9	137137951	137138350	+	0	NA	Intergenic	Intergenic	-1004	NM_007327	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
75805	chr15	68930271	68930700	+	0	NA	promoter-TSS (NM_001184780)	promoter-TSS (NM_001184780)	-40	NM_145658	246777		NM_145658	ENSG00000258484	SPESP1	ESP|SP-ESP	sperm equatorial segment protein 1	protein-coding
75491	chr15	66354421	66355080	+	0	NA	intron (NM_001289986, intron 1 of 6)	L2a|LINE|L2	1935	NM_017858	54962		NM_017858	ENSG00000075131	TIPIN	-	TIMELESS interacting protein	protein-coding
71499	chr14	106007421	106007680	+	0	NA	Intergenic	Intergenic	-35281	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
214853	chr7	151341201	151343150	+	0	NA	intron (NM_001385356, intron 1 of 13)	intron (NM_001385356, intron 1 of 13)	363	NM_016118	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
188041	chr5	149731501	149733080	+	0	NA	promoter-TSS (NR_029870)	promoter-TSS (NR_029870)	-535	NR_029870	494327		NR_029870	ENSG00000199047	MIR378A	MIR378|MIRN378|hsa-mir-378|hsa-mir-378a|miRNA378	microRNA 378a	ncRNA
49454	chr12	24998071	24998450	+	0	NA	promoter-TSS (NM_001101339)	promoter-TSS (NM_001101339)	685	NM_001321724	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
152875	chr22	22559051	22559800	+	0	NA	promoter-TSS (NM_006115).2	promoter-TSS (NM_006115).2	-64	NM_206955	23532		NM_006115	ENSG00000185686	PRAME	CT130|MAPE|OIP-4|OIP4	PRAME nuclear receptor transcriptional regulator	protein-coding
144521	chr20	35704321	35705000	+	0	NA	intron (NM_184234, intron 16 of 16)	intron (NM_184234, intron 16 of 16)	5255	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
88198	chr16	81778771	81780280	+	0	NA	intron (NM_002661, intron 1 of 32)	CpG	234	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
152340	chr22	20426521	20426780	+	0	NA	intron (NM_182895, intron 10 of 10)	intron (NM_182895, intron 10 of 10)	11175	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
163969	chr3	53038821	53039280	+	0	NA	intron (NM_016329, intron 1 of 20)	intron (NM_016329, intron 1 of 20)	7023	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
129172	chr2	68155221	68155880	+	0	NA	intron (NR_046234, intron 1 of 6)	intron (NR_046234, intron 1 of 6)	1977	NM_001256476	116143		NM_138458	ENSG00000243667	DNAAF10	WDR92	dynein axonemal assembly factor 10	protein-coding
92800	chr17	16003971	16004130	+	0	NA	intron (NM_017775, intron 5 of 9)	intron (NM_017775, intron 5 of 9)	4226	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
155778	chr22	39244361	39245230	+	0	NA	5' UTR (NM_002608, exon 1 of 7)	5' UTR (NM_002608, exon 1 of 7)	187	NM_002608	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
80412	chr16	2606371	2607100	+	0	NA	intron (NR_015441, intron 1 of 3)	intron (NR_015441, intron 1 of 3)	3351	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
24529	chr1	244839621	244839900	+	0	NA	intron (NM_001312872, intron 2 of 4)	intron (NM_001312872, intron 2 of 4)	4102	NM_198076	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
217155	chr8	26243871	26244230	+	0	NA	Intergenic	Intergenic	-47458	NM_002717	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
34775	chr11	208401	210050	+	0	NA	promoter-TSS (NR_106801)	promoter-TSS (NR_106801)	-111	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
170016	chr3	180923121	180923380	+	0	NA	intron (NM_001013439, intron 2 of 17)	intron (NM_001013439, intron 2 of 17)	10579	NM_001363882	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
189757	chr5	176623401	176623600	+	0	NA	intron (NM_003085, intron 4 of 5)	MER96|DNA|hAT-Tip100	6000	NR_036239	100422962		NR_036239	ENSG00000266329	MIR4281	-	microRNA 4281	ncRNA
77332	chr15	82517001	82517200	+	0	NA	Intergenic	Intergenic	-2490	NR_111962	642402		NR_111962		GOLGA6L17P	GOLGA6L21P	golgin A6 family like 17, pseudogene	pseudo
57169	chr12	121397871	121398230	+	0	NA	Intergenic	L1MB7|LINE|L1	-2033	NM_025126	80196		NM_025126	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	ring finger protein 34	protein-coding
4363	chr1	20712171	20712350	+	0	NA	intron (NM_020816, intron 3 of 14)	intron (NM_020816, intron 3 of 14)	5747	NM_020816	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
34614	chr10	133277771	133277930	+	0	NA	promoter-TSS (NM_001164489)	promoter-TSS (NM_001164489)	-982	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
216745	chr8	22458951	22459680	+	0	NA	intron (NM_005605, intron 1 of 13)	intron (NM_005605, intron 1 of 13)	18237	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
33864	chr10	124404521	124404780	+	0	NA	intron (NM_001322971, intron 3 of 7)	AluJb|SINE|Alu	14273	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
228298	chr9	98104651	98105430	+	0	NA	intron (NM_014788, intron 2 of 5)	intron (NM_014788, intron 2 of 5)	14182	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
92461	chr17	8486921	8487180	+	0	NA	intron (NM_005964, intron 34 of 40)	intron (NM_005964, intron 34 of 40)	51166	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
176194	chr4	83489901	83490250	+	0	NA	Intergenic	LTR16B|LTR|ERVL	-4975	NM_001345962	84142		NM_139076	ENSG00000163322	ABRAXAS1	ABRA1|CCDC98|FAM175A	abraxas 1, BRCA1 A complex subunit	protein-coding
169973	chr3	179322501	179324100	+	0	NA	promoter-TSS (NM_001375807)	promoter-TSS (NM_001375807)	-153	NM_001375805	51193		NM_016331	ENSG00000121864	ZNF639	ANC-2H01|ANC_2H01|ZASC1	zinc finger protein 639	protein-coding
197285	chr6	70955521	70956980	+	0	NA	exon (NM_080742, exon 1 of 4)	exon (NM_080742, exon 1 of 4)	810	NM_080742	135152		NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
16184	chr1	153799771	153800030	+	0	NA	Intergenic	Intergenic	5953	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
161948	chr3	46208151	46208930	+	0	NA	promoter-TSS (NM_001295)	promoter-TSS (NM_001295)	-227	NM_001295	1230		NM_001295	ENSG00000163823	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	C-C motif chemokine receptor 1	protein-coding
132443	chr2	105847871	105848230	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-3797	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
219275	chr8	67490221	67490830	+	0	NA	intron (NM_020361, intron 6 of 10)	intron (NM_020361, intron 6 of 10)	146691	NR_136224	102724708		NR_136223		ARFGEF1-DT	-	ARFGEF1 divergent transcript	ncRNA
178360	chr4	146178021	146178280	+	0	NA	intron (NM_007080, intron 1 of 3)	intron (NM_007080, intron 1 of 3)	2432	NM_007080	11157		NM_007080	ENSG00000164167	LSM6	YDR378C	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
167035	chr3	126498621	126499080	+	0	NA	intron (NM_144639, intron 13 of 19)	intron (NM_144639, intron 13 of 19)	18923	NM_144639	131669		NM_144639	ENSG00000159650	UROC1	HMFN0320|UROCD	urocanate hydratase 1	protein-coding
145476	chr20	43782271	43782580	+	0	NA	Intergenic	MER41B|LTR|ERV1	-55423	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
54584	chr12	92404971	92405230	+	0	NA	Intergenic	Intergenic	-16431	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
172231	chr4	1333751	1334100	+	0	NA	intron (NR_123716, intron 4 of 6)	intron (NR_123716, intron 4 of 6)	-13283	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
164261	chr3	57558551	57558850	+	0	NA	intron (NM_001322177, intron 1 of 1)	AluSc8|SINE|Alu	2426	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
23041	chr1	226548601	226549150	+	0	NA	5' UTR (NM_001003665, exon 1 of 4)	5' UTR (NM_001003665, exon 1 of 4)	111	NM_001003665	375057		NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
205843	chr7	24906671	24906830	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	-14129	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
6164	chr1	27409571	27409930	+	0	NA	exon (NM_006990, exon 8 of 9)	exon (NM_006990, exon 8 of 9)	17128	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
110254	chr19	1790821	1791750	+	0	NA	intron (NR_047593, intron 20 of 28)	AluJb|SINE|Alu	20991	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
120201	chr19	42288251	42288350	+	0	NA	intron (NM_001379484, intron 6 of 19)	MIRb|SINE|MIR	3831	NM_015125	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
198667	chr6	107848071	107849080	+	0	NA	Intergenic	CpG	-24262	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
180432	chr5	10446301	10446500	+	0	NA	intron (NM_031916, intron 1 of 4)	AluSx|SINE|Alu	4521	NM_031916	83853		NM_031916	ENSG00000145491	ROPN1L	ASP|LINC01513|RSPH11|TCONS_00009352	rhophilin associated tail protein 1 like	protein-coding
102556	chr17	75847271	75847650	+	0	NA	intron (NM_012478, intron 6 of 7)	intron (NM_012478, intron 6 of 7)	-3056	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
149628	chr21	33405871	33406030	+	0	NA	intron (NM_005534, intron 1 of 6)	AluSx|SINE|Alu	2537	NM_005534	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
228266	chr9	98047151	98047450	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-9432	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
185578	chr5	131388551	131389030	+	0	NA	intron (NM_001038702, intron 3 of 4)	intron (NM_001038702, intron 3 of 4)	124737	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
96559	chr17	40433401	40434000	+	0	NA	Intergenic	Intergenic	-9750	NM_001552	3487		NM_001552	ENSG00000141753	IGFBP4	BP-4|HT29-IGFBP|IBP4|IGFBP-4	insulin like growth factor binding protein 4	protein-coding
193748	chr6	31270801	31271600	+	0	NA	exon (NM_002117, exon 3 of 8)	exon (NM_002117, exon 3 of 8)	892	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
176929	chr4	102824221	102824750	+	0	NA	intron (NM_181893, intron 1 of 6)	L2a|LINE|L2	1375	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
52894	chr12	57210901	57211630	+	0	NA	exon (NM_002332, exon 84 of 89)	exon (NM_002332, exon 84 of 89)	-5529	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
159557	chr3	14810601	14811000	+	0	NA	intron (NR_135245, intron 1 of 2)	CpG	614	NR_135245	152274		NR_135245	ENSG00000260902	LINC02011	-	long intergenic non-protein coding RNA 2011	ncRNA
147725	chr20	62385371	62385900	+	0	NA	Intergenic	L1MA3|LINE|L1	-1468	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
210057	chr7	95500451	95500880	+	0	NA	intron (NM_145872, intron 2 of 2)	intron (NM_145872, intron 2 of 2)	14722	NM_016116	51666		NM_016116	ENSG00000005981	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
192106	chr6	16714071	16714600	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	45849	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
60325	chr13	40662721	40663200	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	3681	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
168519	chr3	143956671	143957080	+	0	NA	Intergenic	Intergenic	-14923	NM_001363944	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
98024	chr17	45403621	45404080	+	0	NA	intron (NR_169601, intron 10 of 20)	MIR|SINE|MIR	6536	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
138986	chr2	218293551	218293650	+	0	NA	intron (NM_015488, intron 2 of 9)	AluSz|SINE|Alu	-1023	NM_001321438	64114		NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
154377	chr22	33923551	33923850	+	0	NA	promoter-TSS (NM_001362949)	promoter-TSS (NM_001362949)	-876	NM_001362949	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
41510	chr11	66258201	66259430	+	0	NA	exon (NM_001134776, exon 2 of 16)	exon (NM_001134776, exon 2 of 16)	1112	NM_001134774	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
161660	chr3	43328551	43329250	+	0	NA	intron (NM_017719, intron 3 of 6)	L2b|LINE|L2	23062	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
121398	chr19	46950501	46951550	+	0	NA	intron (NM_004491, intron 3 of 6)	intron (NM_004491, intron 3 of 6)	-68812	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
76636	chr15	75605151	75605550	+	0	NA	intron (NM_001042588, intron 6 of 8)	AluSg|SINE|Alu	20375	NM_005701	10073		NM_005701	ENSG00000169371	SNUPN	KPNBL|RNUT1|Snurportin1	snurportin 1	protein-coding
129404	chr2	68909721	68910400	+	0	NA	Intergenic	Intergenic	-38663	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
220337	chr8	98972371	98972830	+	0	NA	Intergenic	CpG	28158	NM_001142462	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
119451	chr19	40410751	40411980	+	0	NA	intron (NM_020956, intron 1 of 5)	MIRb|SINE|MIR	1999	NM_020956	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
60473	chr13	41134051	41134350	+	0	NA	intron (NR_120423, intron 1 of 3)	MER89-int|LTR|ERV1	1272	NR_120423	101929140		NR_120423	ENSG00000278390	KBTBD6-DT	-	KBTBD6 divergent transcript	ncRNA
14761	chr1	146026021	146026480	+	0	NA	Intergenic	AluSz|SINE|Alu	-4515	NM_145277	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
224839	chr9	27528071	27528900	+	0	NA	intron (NM_024761, intron 1 of 3)	CpG	1329	NM_024761	79817		NM_024761	ENSG00000120162	MOB3B	C9orf35|MOB1D|MOBKL2B	MOB kinase activator 3B	protein-coding
184720	chr5	109407771	109408130	+	0	NA	intron (NM_014819, intron 1 of 9)	L1ME3G|LINE|L1	2024	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
88356	chr16	84571751	84572550	+	0	NA	intron (NM_021149, intron 3 of 3)	intron (NM_021149, intron 3 of 3)	45928	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
67381	chr14	69773501	69775480	+	0	NA	TTS (NM_003049)	TTS (NM_003049)	-6777	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
131916	chr2	98830721	98830980	+	0	NA	intron (NM_207362, intron 5 of 9)	intron (NM_207362, intron 5 of 9)	-58952	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
87497	chr16	71806371	71806530	+	0	NA	intron (NM_001128, intron 1 of 22)	AluJr4|SINE|Alu	2384	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
32663	chr10	103855401	103856080	+	0	NA	promoter-TSS (NM_014631)	promoter-TSS (NM_014631)	-334	NM_014631	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
161589	chr3	43020801	43021500	+	0	NA	intron (NM_001129908, intron 1 of 4)	intron (NM_001129908, intron 1 of 4)	41839	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
100628	chr17	63602621	63602880	+	0	NA	intron (NM_016360, intron 1 of 4)	AluSz|SINE|Alu	1855	NM_016360	51204		NM_016360	ENSG00000136463	TACO1	CCDC44|MC4DN8	translational activator of cytochrome c oxidase I	protein-coding
8791	chr1	42926371	42926930	+	0	NA	3' UTR (NM_006516, exon 10 of 10)	3' UTR (NM_006516, exon 10 of 10)	32218	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
19704	chr1	181085321	181085780	+	0	NA	Intergenic	Intergenic	-3150	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
191769	chr6	14116451	14116550	+	0	NA	promoter-TSS (NM_001251901)	promoter-TSS (NM_001251901)	-756	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
127252	chr2	38694751	38695530	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	29026	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
150879	chr21	44129171	44129330	+	0	NA	intron (NM_005049, intron 20 of 20).2	intron (NM_005049, intron 20 of 20).2	-4433	NR_135220	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
227561	chr9	92136521	92136850	+	0	NA	non-coding (NR_015444, exon 8 of 13)	non-coding (NR_015444, exon 8 of 13)	3851	NR_015444	100128076		NR_015444		LOC100128076	-	protein tyrosine phosphatase receptor type H pseudogene	pseudo
35984	chr11	2868651	2868950	+	0	NA	Intergenic	L2b|LINE|L2	-1233	NR_024627	55539		NM_018722	ENSG00000237941	KCNQ1DN	BWRT|HSA404617	KCNQ1 downstream neighbor	ncRNA
120080	chr19	42090351	42091350	+	0	NA	TTS (NM_001207026)	TTS (NM_001207026)	14684	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
97751	chr17	44425221	44425480	+	0	NA	intron (NM_001304940, intron 7 of 9)	intron (NM_001304940, intron 7 of 9)	11501	NM_001304943	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
176574	chr4	98659901	98660480	+	0	NA	intron (NR_148380, intron 1 of 2)	intron (NR_148380, intron 1 of 2)	1288	NR_148380	105377342		NR_148380		TSPAN5-DT	-	TSPAN5 divergent transcript	ncRNA
61927	chr13	78137501	78137980	+	0	NA	intron (NR_047001, intron 1 of 5)	intron (NR_047001, intron 1 of 5)	82885	NR_047001	100874222		NR_047001	ENSG00000234377	OBI1-AS1	POU4F1-AS1|RNF219-AS1	OBI1 antisense RNA 1	ncRNA
74173	chr15	55321171	55321880	+	0	NA	intron (NM_004855, intron 3 of 11)	intron (NM_004855, intron 3 of 11)	2303	NM_004855	9488		NM_004855	ENSG00000069943	PIGB	DEE80|EIEE80|GPI-MT-III|PIG-B	phosphatidylinositol glycan anchor biosynthesis class B	protein-coding
185166	chr5	119343371	119344600	+	0	NA	intron (NM_001286814, intron 1 of 1)	Chap1_Mam|DNA|hAT-Charlie	-10788	NM_001286813	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
146283	chr20	49110771	49111130	+	0	NA	Intergenic	L1MC4|LINE|L1	64638	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
151486	chr21	46294521	46295180	+	0	NA	intron (NM_001314023, intron 3 of 4)	intron (NM_001314023, intron 3 of 4)	8508	NM_001314022	54059		NM_058181	ENSG00000182362	YBEY	C21orf57	ybeY metalloendoribonuclease	protein-coding
56054	chr12	110556901	110557100	+	0	NA	intron (NM_139283, intron 1 of 5)	intron (NM_139283, intron 1 of 5)	26318	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
33304	chr10	114821401	114823150	+	0	NA	intron (NM_001135051, intron 1 of 16)	CpG	495	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
194557	chr6	33372921	33373180	+	0	NA	Intergenic	LTR72|LTR|ERV1	-18773	NM_002263	3833		NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
134438	chr2	143145321	143145750	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	16116	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
117217	chr19	19409251	19409980	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	3940	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
236411	chrX	71227551	71227650	+	0	NA	Intergenic	Intergenic	4376	NM_000166	2705		NM_000166	ENSG00000169562	GJB1	CMTX|CMTX1|CX32	gap junction protein beta 1	protein-coding
157297	chr22	44333501	44333700	+	0	NA	Intergenic	Intergenic	-20649	NM_001099294	85352		NM_001099294	ENSG00000138944	SHISAL1	KIAA1644	shisa like 1	protein-coding
210700	chr7	100577921	100578500	+	0	NA	exon (NM_002319, exon 7 of 18)	exon (NM_002319, exon 7 of 18)	-2991	NM_001289933								
92360	chr17	8194201	8194600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4220	NM_017622	54785		NM_017622	ENSG00000196544	BORCS6	C17orf59|PRO2472	BLOC-1 related complex subunit 6	protein-coding
212183	chr7	117007421	117007730	+	0	NA	intron (NR_161422, intron 1 of 14)	Tigger1|DNA|TcMar-Tigger	-7337	NM_001369602	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
103471	chr17	78344821	78345300	+	0	NA	Intergenic	Intergenic	14607	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
26209	chr10	14566501	14567100	+	0	NA	intron (NM_001320736, intron 1 of 4)	intron (NM_001320736, intron 1 of 4)	5199	NM_001320736	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
146912	chr20	51563721	51564180	+	0	NA	Intergenic	Intergenic	-1111	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
95243	chr17	35374301	35375150	+	0	NA	Intergenic	Intergenic	-1104	NM_001104587	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
56542	chr12	116858071	116858550	+	0	NA	non-coding (NR_073189, exon 5 of 5)	non-coding (NR_073189, exon 5 of 5)	23131	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
192253	chr6	20211271	20213330	+	0	NA	non-coding (NR_073465, exon 1 of 10)	non-coding (NR_073465, exon 1 of 10)	169	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
143274	chr20	25220251	25220550	+	0	NA	intron (NM_001322379, intron 8 of 11)	intron (NM_001322379, intron 8 of 11)	-23508	NR_109994	101926889		NR_109994		LOC101926889	-	uncharacterized LOC101926889	ncRNA
118496	chr19	35943821	35944080	+	0	NA	intron (NM_024509, intron 2 of 2)	AluJr|SINE|Alu	-3165	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
220012	chr8	90509971	90510150	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	96003	NR_104062	101937451		NR_104062	ENSG00000253799	LINC01030	-	long intergenic non-protein coding RNA 1030	ncRNA
158416	chr22	50538221	50538480	+	0	NA	Intergenic	Intergenic	-5852	NM_001014440	440836		NM_001014440	ENSG00000177989	CIMAP1B	FAP123|ODF3B|ODF3L3	ciliary microtubule associated protein 1B	protein-coding
12620	chr1	109103551	109104200	+	0	NA	Intergenic	AluY|SINE|Alu	3682	NR_003023	677766		NR_003023	ENSG00000278249	SCARNA2	HBII-382|mgU2-25/61	small Cajal body-specific RNA 2	ncRNA
173583	chr4	10161151	10161250	+	0	NA	Intergenic	Intergenic	-44401	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
99147	chr17	49352771	49353130	+	0	NA	intron (NR_135579, intron 1 of 7)	L1ME1|LINE|L1	-8215	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
94089	chr17	27602971	27603630	+	0	NA	intron (NM_014238, intron 12 of 20)	intron (NM_014238, intron 12 of 20)	-27888	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
92395	chr17	8295251	8296230	+	0	NA	promoter-TSS (NM_001320877)	promoter-TSS (NM_001320877)	-340	NR_135483	399512		NM_201520	ENSG00000125434	SLC25A35	-	solute carrier family 25 member 35	protein-coding
203255	chr6	169530521	169530850	+	0	NA	intron (NR_146875, intron 19 of 20)	intron (NR_146875, intron 19 of 20)	171344	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
167906	chr3	136159821	136160330	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSz6|SINE|Alu	34393	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
7195	chr1	32277201	32277500	+	0	NA	intron (NM_001042771, intron 9 of 12)	intron (NM_001042771, intron 9 of 12)	3239	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
77045	chr15	78809551	78810100	+	0	NA	intron (NM_014272, intron 1 of 23)	MIRb|SINE|MIR	1639	NM_014272	11173		NM_014272	ENSG00000136378	ADAMTS7	ADAM-TS 7|ADAM-TS7|ADAMTS-7	ADAM metallopeptidase with thrombospondin type 1 motif 7	protein-coding
32590	chr10	103497751	103498050	+	0	NA	intron (NR_120675, intron 2 of 3)	intron (NR_120675, intron 2 of 3)	4195	NM_004210	9148		NM_004210	ENSG00000107954	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding
132365	chr2	105759671	105760230	+	0	NA	intron (NM_001004722, intron 1 of 3)	L1MC3|LINE|L1	14887	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
9466	chr1	50610821	50611080	+	0	NA	intron (NM_007051, intron 8 of 18)	intron (NM_007051, intron 8 of 18)	-187507	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
39484	chr11	61011001	61011580	+	0	NA	intron (NM_006725, intron 6 of 12)	intron (NM_006725, intron 6 of 12)	39610	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
101336	chr17	66798301	66799800	+	0	NA	intron (NM_002737, intron 16 of 16)	intron (NM_002737, intron 16 of 16)	11978	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
9381	chr1	47312471	47312630	+	0	NA	intron (NM_003035, intron 1 of 16)	intron (NM_003035, intron 1 of 16)	1597	NM_001282936	6491		NM_003035	ENSG00000123473	STIL	MCPH7|SIL	STIL centriolar assembly protein	protein-coding
76102	chr15	72499421	72499880	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	25320	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
1765	chr1	6028001	6029500	+	0	NA	intron (NM_172130, intron 1 of 14)	intron (NM_172130, intron 1 of 14)	2417	NM_003636	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
118837	chr19	38615851	38616600	+	0	NA	exon (NM_001042600, exon 4 of 31)	exon (NM_001042600, exon 4 of 31)	1728	NM_001042600	11184		NM_007181	ENSG00000104814	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
11137	chr1	86712551	86712850	+	0	NA	intron (NM_001206653, intron 1 of 7)	intron (NM_001206653, intron 1 of 7)	8124	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
130063	chr2	74462951	74463250	+	0	NA	intron (NM_006302, intron 3 of 3)	intron (NM_006302, intron 3 of 3)	2282	NM_006302	7841		NM_006302	ENSG00000115275	MOGS	CDG2B|CWH41|DER7|GCS1	mannosyl-oligosaccharide glucosidase	protein-coding
75390	chr15	65747421	65749130	+	0	NA	intron (NM_001376919, intron 4 of 31)	intron (NM_001376919, intron 4 of 31)	-28943	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
90238	chr17	740221	740480	+	0	NA	intron (NM_001318006, intron 3 of 3)	intron (NM_001318006, intron 3 of 3)	7754	NM_024792	79850		NM_024792	ENSG00000167695	TLCD3A	CT120|FAM57A	TLC domain containing 3A	protein-coding
204735	chr7	5564751	5565180	+	0	NA	Intergenic	AluY|SINE|Alu	-27851	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
129592	chr2	70082601	70082800	+	0	NA	intron (NR_033872, intron 3 of 10)	AluSp|SINE|Alu	4315	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
179670	chr4	190016971	190017580	+	0	NA	Intergenic	Intergenic	9981	NM_001005217	448831		NM_001005217	ENSG00000205097	FRG2	FRG2A	FSHD region gene 2	protein-coding
34880	chr11	366471	367400	+	0	NA	Intergenic	AluY|SINE|Alu	-2564	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
167656	chr3	129794101	129794300	+	0	NA	intron (NM_001349271, intron 2 of 4)	intron (NM_001349271, intron 2 of 4)	412	NM_001349273	23023		NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
58529	chr12	132219901	132220100	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-13972	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
51650	chr12	53040351	53041050	+	0	NA	3' UTR (NM_001417, exon 15 of 15)	3' UTR (NM_001417, exon 15 of 15)	-6291	NM_198316	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
104107	chr17	80278021	80278830	+	0	NA	intron (NM_020954, intron 3 of 16)	intron (NM_020954, intron 3 of 16)	17573	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
234109	chrX	9465801	9467080	+	0	NA	intron (NM_005647, intron 1 of 17)	CpG	1382	NM_005647	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
32565	chr10	103395721	103397180	+	0	NA	promoter-TSS (NM_014976)	promoter-TSS (NM_014976)	25	NM_032747	84833		NM_032747	ENSG00000173915	ATP5MK	AGP|ATP5MD|DAPIT|HCVFTP2|MC5DN6|USMG5|bA792D24.4	ATP synthase membrane subunit k	protein-coding
156003	chr22	39932801	39933300	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	6446	NM_001291828	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
69731	chr14	98443951	98444650	+	0	NA	Intergenic	MIRb|SINE|MIR	-267313	NR_161367	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
191228	chr6	5786901	5787300	+	0	NA	Intergenic	Intergenic	-91828	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
90989	chr17	2721271	2721980	+	0	NA	3' UTR (NM_001355573, exon 4 of 4)	3' UTR (NM_001355573, exon 4 of 4)	9316	NR_136412	105371592		NR_136412		LOC105371592	-	uncharacterized LOC105371592	ncRNA
217014	chr8	23198601	23198800	+	0	NA	intron (NM_003844, intron 8 of 9)	intron (NM_003844, intron 8 of 9)	26402	NM_003844	8797		NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
25098	chr10	3893971	3894930	+	0	NA	Intergenic	Intergenic	60500	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
183641	chr5	80245451	80245550	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	10548	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
75365	chr15	65608301	65608900	+	0	NA	intron (NR_045901, intron 1 of 10)	intron (NR_045901, intron 1 of 10)	2531	NM_001207058	81556		NM_030800	ENSG00000138614	INTS14	C15orf44|VWA9	integrator complex subunit 14	protein-coding
1432	chr1	2590451	2591250	+	0	NA	non-coding (NR_036637, exon 7 of 7).2	non-coding (NR_036637, exon 7 of 7).2	4073	NM_001195741	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
106599	chr18	22232171	22232530	+	0	NA	Intergenic	(CCAT)n|Simple_repeat|Simple_repeat	62761	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
48974	chr12	12998371	12999150	+	0	NA	intron (NM_015987, intron 1 of 3)	intron (NM_015987, intron 1 of 3)	1505	NM_015987	50865		NM_015987	ENSG00000013583	HEBP1	HBP|HEBP	heme binding protein 1	protein-coding
120919	chr19	45640971	45644000	+	0	NA	non-coding (NR_130728, exon 3 of 3)	non-coding (NR_130728, exon 3 of 3)	991	NR_130728	100287177		NM_001242348	ENSG00000267757	EML2-AS1	C19orf83	EML2 antisense RNA 1	ncRNA
236597	chrX	73855521	73855800	+	0	NA	Intergenic	Intergenic	-2907	NR_001564	7503		NR_001564	ENSG00000229807	XIST	DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66	X inactive specific transcript	ncRNA
199377	chr6	116270051	116270350	+	0	NA	intron (NM_001322937, intron 2 of 6)	intron (NM_001322937, intron 2 of 6)	9730	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
152242	chr22	20195071	20195880	+	0	NA	Intergenic	Intergenic	9443	NR_038460	284865		NR_038460	ENSG00000249923	LINC02891	lnc-RTN4R-1	long intergenic non-protein coding RNA 2891	ncRNA
189000	chr5	168377521	168377780	+	0	NA	intron (NM_015238, intron 2 of 22)	L1PA16|LINE|L1	86005	NM_001161661	23286		NM_015238	ENSG00000113645	WWC1	HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168	WW and C2 domain containing 1	protein-coding
200367	chr6	134171551	134172080	+	0	NA	intron (NM_001143676, intron 10 of 13)	intron (NM_001143676, intron 10 of 13)	3051	NM_005627	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
44496	chr11	105609251	105609630	+	0	NA	promoter-TSS (NM_000829)	promoter-TSS (NM_000829)	-633	NM_001077243	2893		NM_000829	ENSG00000152578	GRIA4	GLUR4|GLUR4C|GLURD|GluA4|GluA4-ATD|NEDSGA	glutamate ionotropic receptor AMPA type subunit 4	protein-coding
175721	chr4	77571651	77571750	+	0	NA	intron (NM_006419, intron 1 of 4)	LTR12C|LTR|ERV1	-34120	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
62476	chr13	99382601	99383380	+	0	NA	intron (NR_026644, intron 8 of 8)	L3|LINE|CR1	26859	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
130369	chr2	85243601	85243930	+	0	NA	intron (NM_031283, intron 3 of 11)	L2a|LINE|L2	30113	NR_136323	102724579		NR_136323		LOC102724579	-	uncharacterized LOC102724579	ncRNA
126026	chr2	25341701	25343630	+	0	NA	promoter-TSS (NM_175629)	promoter-TSS (NM_175629)	-75	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
53595	chr12	68011921	68012230	+	0	NA	intron (NR_104125, intron 3 of 3)	intron (NR_104125, intron 3 of 3)	22630	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
217387	chr8	28162951	28163250	+	0	NA	intron (NM_018091, intron 14 of 14)	intron (NM_018091, intron 14 of 14)	69961	NM_001284224	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
67480	chr14	70912571	70913000	+	0	NA	intron (NM_014982, intron 1 of 35)	L2a|LINE|L2	5326	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
79991	chr16	1822401	1822600	+	0	NA	intron (NM_001040427, intron 3 of 9)	intron (NM_001040427, intron 3 of 9)	4325	NM_005326	3029		NM_005326	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
206188	chr7	28169601	28170000	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-10657	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
121854	chr19	48248301	48248700	+	0	NA	intron (NM_001351782, intron 3 of 14)	L1ME3G|LINE|L1	1133	NR_033678	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
111801	chr19	4454751	4455050	+	0	NA	intron (NM_025241, intron 1 of 10)	MIRb|SINE|MIR	401	NM_001171091	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
45954	chr11	121416251	121416550	+	0	NA	Intergenic	Intergenic	-35914	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
72487	chr15	32617521	32618080	+	0	NA	intron (NM_199357, intron 1 of 10)	intron (NM_199357, intron 1 of 10)	2296	NM_001286480	9824		NM_014783	ENSG00000198826	ARHGAP11A	GAP (1-12)	Rho GTPase activating protein 11A	protein-coding
180484	chr5	14011371	14011800	+	0	NA	Intergenic	CpG	-66897	NM_001369	1767		NM_001369	ENSG00000039139	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein axonemal heavy chain 5	protein-coding
50631	chr12	48709821	48710250	+	0	NA	intron (NM_001240, intron 2 of 8)	AluSz|SINE|Alu	6672	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
117030	chr19	18924821	18925280	+	0	NA	intron (NM_019070, intron 9 of 12)	intron (NM_019070, intron 9 of 12)	5335	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
48627	chr12	10383571	10383730	+	0	NA	intron (NR_120430, intron 3 of 3)	L1MA5|LINE|L1	6391	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
53560	chr12	67593571	67594030	+	0	NA	Intergenic	Intergenic	-54945	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
207531	chr7	44816921	44817400	+	0	NA	Intergenic	AluSz|SINE|Alu	20479	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
122915	chr19	50638951	50640380	+	0	NA	intron (NM_001160328, intron 1 of 10)	CpG	170	NM_001160328	84258		NM_032298	ENSG00000213023	SYT3	SytIII	synaptotagmin 3	protein-coding
66070	chr14	58572071	58572450	+	0	NA	Intergenic	Intergenic	-61801	NR_046093	51339		NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding
127350	chr2	39126771	39127130	+	0	NA	Intergenic	AluSg|SINE|Alu	-2082	NM_001382394	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
204869	chr7	5839071	5839430	+	0	NA	intron (NR_023382, intron 2 of 6)	L2c|LINE|L2	16090	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
134867	chr2	148722251	148722750	+	0	NA	intron (NM_015630, intron 2 of 13)	L1PA15|LINE|L1	77749	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
156309	chr22	40541501	40541700	+	0	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-7773	NM_001318139	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
207816	chr7	50313951	50314300	+	0	NA	intron (NM_001291837, intron 1 of 6)	AluY|SINE|Alu	-4923	NM_001220768	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
42229	chr11	68049821	68050080	+	0	NA	intron (NM_001351059, intron 15 of 18)	intron (NM_001351059, intron 15 of 18)	5156	NR_106811	102465451		NR_106811	ENSG00000275022	MIR6753	hsa-mir-6753	microRNA 6753	ncRNA
199520	chr6	118712771	118713280	+	0	NA	Intergenic	Intergenic	-2950	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
196723	chr6	45155621	45156420	+	0	NA	intron (NM_001350329, intron 2 of 10)	intron (NM_001350329, intron 2 of 10)	41750	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
30666	chr10	80490821	80491280	+	0	NA	intron (NM_001128309, intron 2 of 5)	intron (NM_001128309, intron 2 of 5)	22809	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
28584	chr10	51707671	51708600	+	0	NA	intron (NM_001098512, intron 3 of 17)	MLT1B|LTR|ERVL-MaLR	-8540	NM_015235	23283		NM_015235	ENSG00000177613	CSTF2T	CstF-64T	cleavage stimulation factor subunit 2 tau variant	protein-coding
215697	chr8	1163521	1164030	+	0	NA	intron (NM_001346810, intron 2 of 14)	CpG	138832	NR_111948	286083		NR_033895	ENSG00000275427	LOC286083	-	uncharacterized LOC286083	ncRNA
178262	chr4	143558971	143560060	+	0	NA	promoter-TSS (NR_003675)	promoter-TSS (NR_003675)	43	NR_003675	441046		NM_001011539	ENSG00000251600	GUSBP5	GYPELOC441046	GUSB pseudogene 5	pseudo
141788	chr20	65151	65250	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-22472	NM_153325	245938		NM_153325	ENSG00000178591	DEFB125	DEFB-25	defensin beta 125	protein-coding
12571	chr1	108744051	108744350	+	0	NA	Intergenic	Intergenic	-2474	NM_007269	6814		NM_007269	ENSG00000116266	STXBP3	MUNC18-3|MUNC18C|PSP|UNC-18C	syntaxin binding protein 3	protein-coding
219842	chr8	81839221	81840250	+	0	NA	exon (NM_152837, exon 2 of 7)	exon (NM_152837, exon 2 of 7)	2450	NR_145473	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
14142	chr1	121020701	121021130	+	0	NA	intron (NR_135813, intron 2 of 2)	Alu|SINE|Alu	31252	NR_135813	101929798		NR_135813	ENSG00000290904	PDE4DIPP4	CH17-118O6.3	PDE4DIP pseudogene 4	pseudo
61715	chr13	74110871	74111030	+	0	NA	intron (NM_007249, intron 1 of 7)	AluSx1|SINE|Alu	22979	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
185198	chr5	119396251	119396950	+	0	NA	3' UTR (NM_001286813, exon 3 of 3)	3' UTR (NM_001286813, exon 3 of 3)	40581	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
73448	chr15	43294451	43294550	+	0	NA	intron (NM_052955, intron 1 of 12)	MIRb|SINE|MIR	7755	NM_052955	116179		NM_052955	ENSG00000159495	TGM7	TGMZ	transglutaminase 7	protein-coding
96517	chr17	40333821	40335250	+	0	NA	intron (NM_001145302, intron 2 of 6)	intron (NM_001145302, intron 2 of 6)	-7631	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
79782	chr16	1378971	1380580	+	0	NA	promoter-TSS (NM_001367622)	promoter-TSS (NM_001367622)	-123	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
61674	chr13	73988521	73988780	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	145279	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
189281	chr5	172098771	172099350	+	0	NA	intron (NM_005990, intron 7 of 18)	(CCATCA)n|Simple_repeat|Simple_repeat	89164	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
59112	chr13	21218571	21219080	+	0	NA	Intergenic	Tigger16a|DNA|TcMar-Tigger	-15743	NR_125745	103689843		NR_125745		LINC01046	-	long intergenic non-protein coding RNA 1046	ncRNA
196624	chr6	44264201	44266300	+	0	NA	exon (NM_004556, exon 1 of 6)	exon (NM_004556, exon 1 of 6)	301	NM_004556	4794		NM_004556	ENSG00000146232	NFKBIE	IKBE	NFKB inhibitor epsilon	protein-coding
125625	chr2	19352951	19353600	+	0	NA	exon (NM_145260, exon 2 of 3)	exon (NM_145260, exon 2 of 3)	4846	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
21827	chr1	207334271	207334730	+	0	NA	intron (NM_001300904, intron 6 of 10)	L1MEg|LINE|L1	12822	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
148718	chr21	6676851	6676950	+	0	NA	Intergenic	Intergenic	114980	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
118468	chr19	35889421	35890230	+	0	NA	intron (NM_139239, intron 11 of 11)	intron (NM_139239, intron 11 of 11)	9912	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
111665	chr19	4250501	4251300	+	0	NA	intron (NM_018074, intron 2 of 7)	L3|LINE|CR1	3820	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
193067	chr6	28711721	28712480	+	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-57625	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
157122	chr22	42657651	42657750	+	0	NA	Intergenic	Intergenic	-8308	NM_000398	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
209926	chr7	92530851	92531180	+	0	NA	intron (NM_032120, intron 2 of 4)	AluSz6|SINE|Alu	2220	NM_001363366	84060		NM_032120	ENSG00000127993	RBM48	C7orf64|HSPC304	RNA binding motif protein 48	protein-coding
13267	chr1	112722551	112723530	+	0	NA	exon (NM_001004440, exon 4 of 6)	exon (NM_001004440, exon 4 of 6)	4135	NR_169586	284467		NM_182759	ENSG00000184599	TAFA3	FAM19A3|TAFA-3	TAFA chemokine like family member 3	protein-coding
171963	chr4	902171	902550	+	0	NA	intron (NM_001318134, intron 2 of 24)	AluJb|SINE|Alu	29956	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
208236	chr7	65429671	65429830	+	0	NA	Intergenic	Intergenic	55895	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
58895	chr13	19586671	19587630	+	0	NA	promoter-TSS (NR_046988)	promoter-TSS (NR_046988)	32	NR_046988	100874136		NR_046988	ENSG00000225316	TPTE2-AS1	LINC00350	TPTE2 antisense RNA 1	ncRNA
91940	chr17	7341971	7342330	+	0	NA	intron (NM_014716, intron 3 of 21)	intron (NM_014716, intron 3 of 21)	5621	NM_014716	9744		NM_014716	ENSG00000072818	ACAP1	CENTB1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding
58401	chr12	131904701	131905430	+	0	NA	intron (NM_003565, intron 3 of 27)	intron (NM_003565, intron 3 of 27)	10443	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
2260	chr1	8914801	8915200	+	0	NA	Intergenic	AluSz|SINE|Alu	-30868	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
184593	chr5	103041121	103041380	+	0	NA	Intergenic	Intergenic	78888	NM_001317954	54826		NM_017676	ENSG00000145723	GIN1	GIN-1|TGIN1|ZH2C2	gypsy retrotransposon integrase 1	protein-coding
200955	chr6	139183671	139184650	+	0	NA	Intergenic	Intergenic	49080	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
75020	chr15	64061221	64061550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14900	NM_001384998	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
239272	chrY	13691851	13691950	+	0	NA	Intergenic	L1PA3|LINE|L1	-11999	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
182297	chr5	58452701	58452900	+	0	NA	Intergenic	L2b|LINE|L2	7286	NM_006622	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
73626	chr15	44598101	44598500	+	0	NA	exon (NM_001160227, exon 23 of 38)	exon (NM_001160227, exon 23 of 38)	61153	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
58860	chr12	133081751	133081850	+	0	NA	intron (NM_001300776, intron 2 of 3)	intron (NM_001300776, intron 2 of 3)	1597	NM_003440	7699		NM_003440	ENSG00000196387	ZNF140	pHZ-39	zinc finger protein 140	protein-coding
227423	chr9	89739521	89739980	+	0	NA	Intergenic	Intergenic	99967	NR_024280	100129066		NR_024280	ENSG00000237372	LINC03062	-	long intergenic non-protein coding RNA 3062	ncRNA
98743	chr17	48046471	48046630	+	0	NA	Intergenic	AluJo|SINE|Alu	-1809	NM_001330262	4779		NM_003204	ENSG00000082641	NFE2L1	LCR-F1|NRF-1|NRF1|TCF11	NFE2 like bZIP transcription factor 1	protein-coding
109974	chr19	1397551	1398130	+	0	NA	TTS (NM_138924)	TTS (NM_138924)	3702	NM_138924	2593		NM_000156	ENSG00000130005	GAMT	CCDS2|HEL-S-20|PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
200605	chr6	136749921	136750350	+	0	NA	intron (NM_005923, intron 1 of 29)	AluSz|SINE|Alu	-33912	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
69120	chr14	92526621	92527300	+	0	NA	intron (NM_024832, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	13179	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
238948	chrX	154939401	154939600	+	0	NA	intron (NM_000132, intron 13 of 25)	L1PA3|LINE|L1	-52042	NR_036259	100422985		NR_036259	ENSG00000221190	MIR1184-2	-	microRNA 1184-2	ncRNA
126277	chr2	27194401	27195380	+	0	NA	Intergenic	L1ME3D|LINE|L1	17378	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
196170	chr6	42567301	42568130	+	0	NA	intron (NM_001363705, intron 1 of 46)	AluSc|SINE|Alu	3686	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
211231	chr7	102641421	102641680	+	0	NA	intron (NM_032959, intron 4 of 8)	intron (NM_032959, intron 4 of 8)	1241	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
23884	chr1	234911271	234912500	+	0	NA	Intergenic	Intergenic	52114	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
80533	chr16	2768551	2769030	+	0	NA	intron (NM_016333, intron 11 of 14)	L3b|LINE|CR1	8490	NM_207013	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
1409	chr1	2560601	2560950	+	0	NA	intron (NM_001297605, intron 5 of 6)	intron (NM_001297605, intron 5 of 6)	-3764	NR_037844	115110		NR_026927		TNFRSF14-AS1	-	TNFRSF14 antisense RNA 1	ncRNA
123219	chr19	52786151	52787730	+	0	NA	promoter-TSS (NM_198457)	promoter-TSS (NM_198457)	-149	NM_001321867	162966		NM_198457	ENSG00000189190	ZNF600	KR-ZNF1	zinc finger protein 600	protein-coding
25328	chr10	6230821	6231080	+	0	NA	intron (NM_001314063, intron 15 of 15)	AluSq|SINE|Alu	28018	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
70908	chr14	104086451	104087180	+	0	NA	intron (NM_001080464, intron 1 of 15)	(CCTCCC)n|Simple_repeat|Simple_repeat	1115	NM_001080464	374569		NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT|LYSOLP|hASNase1	asparaginase	protein-coding
138198	chr2	202669921	202670580	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	35281	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
165829	chr3	105836001	105836200	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	31491	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
146698	chr20	50546821	50547530	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	36792	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
111307	chr19	3608101	3608450	+	0	NA	intron (NR_038865, intron 1 of 3)	intron (NR_038865, intron 1 of 3)	1028	NR_038865	404665		NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	ncRNA
187242	chr5	141373771	141373930	+	0	NA	promoter-TSS (NM_018919)	promoter-TSS (NM_018919)	-41	NM_018919	56109		NM_018919	ENSG00000253731	PCDHGA6	PCDH-GAMMA-A6	protocadherin gamma subfamily A, 6	protein-coding
108806	chr18	78586951	78587250	+	0	NA	Intergenic	Intergenic	-393175	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
226074	chr9	62377751	62377850	+	0	NA	promoter-TSS (NR_126048).2	promoter-TSS (NR_126048).2	-930	NR_126048	102724238		NR_126048	ENSG00000204802	FAM88C	Lnc-PPRL	family with sequence similarity 88 member C	ncRNA
200861	chr6	138590401	138591350	+	0	NA	Intergenic	Intergenic	-18306	NM_020464	57224		NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
179999	chr5	957171	958830	+	0	NA	Intergenic	Intergenic	39340	NR_104614	100506688		NM_001242737	ENSG00000215246	LINC02982	-	long intergenic non-protein coding RNA 2982	ncRNA
24300	chr1	236602721	236602980	+	0	NA	intron (NM_018072, intron 3 of 44)	AluSx1|SINE|Alu	1666	NM_018072	55127		NM_018072	ENSG00000119285	HEATR1	BAP28|UTP10	HEAT repeat containing 1	protein-coding
217881	chr8	37863921	37864180	+	0	NA	intron (NM_025151, intron 4 of 4)	intron (NM_025151, intron 4 of 4)	-14189	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
19930	chr1	184494101	184494300	+	0	NA	intron (NM_030806, intron 2 of 5)	L2a|LINE|L2	107171	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
214630	chr7	150737001	150737910	+	0	NA	5' UTR (NM_018384, exon 1 of 3)	5' UTR (NM_018384, exon 1 of 3)	107	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
134361	chr2	136180051	136180350	+	0	NA	Intergenic	Intergenic	-62051	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
162427	chr3	48423571	48423930	+	0	NA	exon (NM_001130082, exon 3 of 38)	exon (NM_001130082, exon 3 of 38)	5713	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
114136	chr19	11212951	11213050	+	0	NA	intron (NM_020812, intron 35 of 47)	FRAM|SINE|Alu	9372	NR_134909	105372273		NR_134909	ENSG00000267082	DOCK6-AS1	-	DOCK6 antisense RNA 1	ncRNA
140974	chr2	237965101	237965450	+	0	NA	Intergenic	Intergenic	-1670	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
65864	chr14	55062671	55063230	+	0	NA	exon (NM_144578, exon 3 of 4)	exon (NM_144578, exon 3 of 4)	11303	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
88116	chr16	81568421	81569280	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	34948	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
170512	chr3	186502701	186503250	+	0	NA	Intergenic	Intergenic	-9314	NR_033844	253573		NR_033844	ENSG00000224406	LINC02052	-	long intergenic non-protein coding RNA 2052	ncRNA
10417	chr1	65393401	65393650	+	0	NA	intron (NM_014787, intron 12 of 18)	intron (NM_014787, intron 12 of 18)	-27127	NM_001003679	3953		NM_002303	ENSG00000116678	LEPR	CD295|LEP-R|LEPRD|OB-R|OBR	leptin receptor	protein-coding
202731	chr6	158958821	158959180	+	0	NA	Intergenic	MSTC-int|LTR|ERVL-MaLR	41187	NR_144434	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
228732	chr9	109319971	109320330	+	0	NA	exon (NM_018424, exon 1 of 16)	exon (NM_018424, exon 1 of 16)	814	NM_018424	54566		NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2|LULU2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
223083	chr8	143410201	143410400	+	0	NA	Intergenic	Intergenic	-7379	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
74008	chr15	52137551	52138050	+	0	NA	intron (NM_001379343, intron 5 of 10)	intron (NM_001379343, intron 5 of 10)	-25025	NM_001306168	10017		NM_020396	ENSG00000137875	BCL2L10	BCL-B|Boo|Diva|bcl2-L-10	BCL2 like 10	protein-coding
92025	chr17	7475251	7475350	+	0	NA	intron (NM_020899, intron 1 of 3)	AluSq2|SINE|Alu	4331	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
85548	chr16	53159671	53160100	+	0	NA	intron (NM_001352127, intron 2 of 38)	AluSx|SINE|Alu	28873	NM_001382353	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
1099	chr1	2029721	2029980	+	0	NA	intron (NM_000815, intron 8 of 8)	intron (NM_000815, intron 8 of 8)	10505	NM_000815	2563		NM_000815	ENSG00000187730	GABRD	EIG10|EJM7|GABAARdelta|GEFSP5	gamma-aminobutyric acid type A receptor subunit delta	protein-coding
163189	chr3	50207821	50209100	+	0	NA	intron (NM_006841, intron 1 of 15)	AluSx1|SINE|Alu	3189	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
34133	chr10	128042101	128042580	+	0	NA	intron (NM_001323354, intron 2 of 19)	intron (NM_001323354, intron 2 of 19)	-5272	NM_130435	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
22683	chr1	223837271	223837880	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	8372	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
226938	chr9	79619421	79619900	+	0	NA	intron (NM_001351563, intron 5 of 17)	intron (NM_001351563, intron 5 of 17)	46483	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
118331	chr19	35575621	35575750	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-12027	NM_000704	495		NM_000704	ENSG00000105675	ATP4A	ATP6A	ATPase H+/K+ transporting subunit alpha	protein-coding
238660	chrX	154019061	154021080	+	0	NA	promoter-TSS (NM_001025243)	promoter-TSS (NM_001025243)	-81	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
230101	chr9	127569941	127570900	+	0	NA	intron (NM_001035534, intron 1 of 13)	MIRb|SINE|MIR	-1347	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
101517	chr17	67826101	67827430	+	0	NA	intron (NM_182641, intron 1 of 27)	intron (NM_182641, intron 1 of 27)	1262	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
179124	chr4	168923751	168924050	+	0	NA	intron (NM_001166108, intron 18 of 21)	intron (NM_001166108, intron 18 of 21)	86355	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
231519	chr9	131421771	131422000	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	27799	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
146666	chr20	50487221	50487680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-22871	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138166	chr2	202632701	202633280	+	0	NA	Intergenic	Intergenic	-1979	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
25964	chr10	11662651	11662950	+	0	NA	Intergenic	Intergenic	-51011	NR_125732	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
112260	chr19	5789751	5789850	+	0	NA	intron (NM_020175, intron 2 of 12)	MIRb|SINE|MIR	1363	NM_020175	56931		NM_020175	ENSG00000141994	DUS3L	DUS3	dihydrouridine synthase 3 like	protein-coding
47146	chr12	756921	757500	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	4287	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
118004	chr19	34096351	34096530	+	0	NA	Intergenic	Intergenic	-76064	NR_169265	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
124911	chr2	8487051	8487150	+	0	NA	Intergenic	AluY|SINE|Alu	96692	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
128051	chr2	47780401	47780850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2457	NM_001281493	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
102052	chr17	74872571	74875050	+	0	NA	promoter-TSS (NR_047576)	promoter-TSS (NR_047576)	-816	NM_001258013	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
15331	chr1	149901501	149902130	+	0	NA	Intergenic	AluSx3|SINE|Alu	2247	NM_001321026	51027		NM_016074	ENSG00000178096	BOLA1	CGI-143	bolA family member 1	protein-coding
11339	chr1	89552451	89553150	+	0	NA	intron (NM_001134476, intron 3 of 7)	intron (NM_001134476, intron 3 of 7)	27971	NM_001369819	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
108587	chr18	75207821	75208500	+	0	NA	intron (NM_175907, intron 1 of 1)	CpG	979	NM_175907	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
82404	chr16	16221601	16222000	+	0	NA	exon (NM_001171, exon 2 of 31)	exon (NM_001171, exon 2 of 31)	1671	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
223389	chr8	143916121	143916400	+	0	NA	exon (NM_000445, exon 33 of 33)	exon (NM_000445, exon 33 of 33)	23337	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
238589	chrX	153896321	153896580	+	0	NA	Intergenic	L1MCc|LINE|L1	-6175	NR_027419	554		NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|NDI1|V2R	arginine vasopressin receptor 2	protein-coding
4662	chr1	22400471	22401030	+	0	NA	Intergenic	L2b|LINE|L2	-51101	NM_014870	9923		NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
199871	chr6	127809751	127809850	+	0	NA	intron (NM_001164685, intron 4 of 6)	L3|LINE|CR1	45388	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
140038	chr2	231197971	231199850	+	0	NA	5' UTR (NM_001271466, exon 1 of 25)	5' UTR (NM_001271466, exon 1 of 25)	279	NM_001352755	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
154694	chr22	36386201	36387300	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	1217	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
114614	chr19	12969351	12969450	+	0	NA	promoter-TSS (NM_152654)	promoter-TSS (NM_152654)	-218	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
236742	chrX	78157321	78157580	+	0	NA	Intergenic	L1PA4|LINE|L1	-17800	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
66463	chr14	61555651	61555750	+	0	NA	TTS (NR_110417)	TTS (NR_110417)	14494	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
99349	chr17	49874371	49874730	+	0	NA	Intergenic	Intergenic	-26533	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
9851	chr1	54270621	54270880	+	0	NA	intron (NM_145716, intron 5 of 17)	intron (NM_145716, intron 5 of 17)	34307	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
182122	chr5	56100421	56101430	+	0	NA	intron (NM_024669, intron 11 of 11)	intron (NM_024669, intron 11 of 11)	105758	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
202959	chr6	161228101	161228500	+	0	NA	intron (NM_020133, intron 2 of 8)	intron (NM_020133, intron 2 of 8)	45761	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
132957	chr2	111466401	111467150	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	28386	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
67266	chr14	69138021	69138280	+	0	NA	intron (NM_001284208, intron 1 of 6)	intron (NM_001284208, intron 1 of 6)	14449	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
174828	chr4	48271771	48271950	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-2022	NM_003215	7006		NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
237152	chrX	107448821	107449180	+	0	NA	Intergenic	Intergenic	-73450	NM_032428	84443		NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
63984	chr14	22271821	22272250	+	0	NA	Intergenic	Intergenic	160718	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
101760	chr17	72634271	72635030	+	0	NA	intron (NR_033876, intron 2 of 4)	intron (NR_033876, intron 2 of 4)	5822	NR_033876	400619		NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
141294	chr2	240258351	240258490	+	0	NA	Intergenic	Intergenic	-117762	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
17492	chr1	156725171	156726300	+	0	NA	intron (NM_001370150, intron 2 of 3)	intron (NM_001370150, intron 2 of 3)	2704	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
49688	chr12	30758051	30758350	+	0	NA	intron (NR_135046, intron 1 of 1)	intron (NR_135046, intron 1 of 1)	3126	NR_135046	645485		NR_135046	ENSG00000246331	LOC645485	-	uncharacterized LOC645485	ncRNA
144463	chr20	35597421	35597880	+	0	NA	intron (NR_119376, intron 19 of 42)	L2a|LINE|L2	9912	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
145065	chr20	38472321	38473500	+	0	NA	promoter-TSS (NM_001282918)	promoter-TSS (NM_001282918)	67	NM_001282918	57148		NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta	Ral GTPase activating protein non-catalytic subunit beta	protein-coding
114713	chr19	13159601	13160730	+	0	NA	Intergenic	Intergenic	9754	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
154793	chr22	36828921	36829180	+	0	NA	Intergenic	L2c|LINE|L2	-9551	NM_002854	5816		NM_002854	ENSG00000100362	PVALB	D22S749	parvalbumin	protein-coding
129747	chr2	70980351	70980450	+	0	NA	intron (NM_001115116, intron 3 of 5)	MIRb|SINE|MIR	1770	NM_024933	79998		NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
132607	chr2	108587901	108588330	+	0	NA	promoter-TSS (NM_001193488)	promoter-TSS (NM_001193488)	-191	NM_001193488	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
202609	chr6	158724801	158725200	+	0	NA	intron (NM_001318745, intron 7 of 14)	AluSz|SINE|Alu	39753	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
53829	chr12	69359531	69360830	+	0	NA	intron (NM_001300950, intron 1 of 4)	CpG	437	NM_006530	8089		NM_006530	ENSG00000127337	YEATS4	4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9	YEATS domain containing 4	protein-coding
101491	chr17	67629851	67630330	+	0	NA	intron (NM_181671, intron 5 of 9)	intron (NM_181671, intron 5 of 9)	-87743	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
37124	chr11	13332751	13333080	+	0	NA	intron (NM_001351821, intron 3 of 19)	intron (NM_001351821, intron 3 of 19)	55125	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
160728	chr3	32440301	32440530	+	0	NA	intron (NM_138410, intron 1 of 4)	AluSz|SINE|Alu	48562	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
81606	chr16	10514551	10514900	+	0	NA	TTS (NR_149081)	TTS (NR_149081)	13473	NR_149081	106144584		NR_149081	ENSG00000260468	LINC01290	-	long intergenic non-protein coding RNA 1290	ncRNA
44285	chr11	102306401	102307650	+	0	NA	Intergenic	L3|LINE|CR1	-10459	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
57807	chr12	123131421	123132330	+	0	NA	intron (NM_001300801, intron 1 of 25)	MIRb|SINE|MIR	19215	NM_020845	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
218207	chr8	42015171	42015830	+	0	NA	intron (NM_001305878, intron 2 of 13)	L2c|LINE|L2	-36250	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
109038	chr18	79739051	79739350	+	0	NA	intron (NM_004715, intron 12 of 12)	intron (NM_004715, intron 12 of 12)	57770	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
16048	chr1	152461371	152462130	+	0	NA	Intergenic	Intergenic	-47487	NM_016190	49860		NM_016190	ENSG00000143536	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
104150	chr17	80389501	80389900	+	0	NA	intron (NM_001256071, intron 65 of 67)	intron (NM_001256071, intron 65 of 67)	-25467	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
67791	chr14	73759701	73760950	+	0	NA	promoter-TSS (NM_194278)	promoter-TSS (NM_194278)	-22	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
143618	chr20	31735201	31735650	+	0	NA	Intergenic	AluSg|SINE|Alu	-3865	NM_012112	22974		NM_012112	ENSG00000088325	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2 microtubule nucleation factor	protein-coding
204656	chr7	5428971	5429130	+	0	NA	promoter-TSS (NM_001354886)	promoter-TSS (NM_001354886)	-123	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
208178	chr7	64790971	64791160	+	0	NA	Intergenic	AluJb|SINE|Alu	-3363	NM_001367574	7697		NM_006524	ENSG00000197008	ZNF138	pHZ-32	zinc finger protein 138	protein-coding
39443	chr11	60928551	60928930	+	0	NA	exon (NM_178031, exon 4 of 11)	exon (NM_178031, exon 4 of 11)	4280	NM_178031	54972		NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
193048	chr6	28597271	28597450	+	0	NA	intron (NM_001329616, intron 1 of 5)	tRNA-Ser-AGY|tRNA|tRNA	-10062	NM_052923	114821		NM_052923	ENSG00000232040	SCAND3	Buster4|FAM200D|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
140292	chr2	232369821	232370300	+	0	NA	Intergenic	Intergenic	-8691	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
139144	chr2	219055751	219056050	+	0	NA	intron (NM_002181, intron 2 of 2)	intron (NM_002181, intron 2 of 2)	2850	NR_036081	100422957		NR_036081	ENSG00000264755	MIR3131	mir-3131	microRNA 3131	ncRNA
118447	chr19	35863001	35864080	+	0	NA	intron (NM_032123, intron 13 of 15)	AluSx1|SINE|Alu	-4905	NM_005166	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
50137	chr12	45719001	45719200	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	8821	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
181995	chr5	55228971	55229130	+	0	NA	Intergenic	Intergenic	-1735	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
179977	chr5	859471	860030	+	0	NA	Intergenic	Intergenic	-8764	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
2871	chr1	11374021	11374500	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	101062	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
162902	chr3	49401101	49401880	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluJr|SINE|Alu	10486	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
48121	chr12	7883071	7883630	+	0	NA	intron (NM_001286237, intron 1 of 9)	AluY|SINE|Alu	7846	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
10650	chr1	70314801	70315000	+	0	NA	intron (NM_030816, intron 4 of 12)	intron (NM_030816, intron 4 of 12)	39822	NM_030816	81573		NM_030816	ENSG00000118454	ANKRD13C	dJ677H15.3	ankyrin repeat domain 13C	protein-coding
157246	chr22	43377771	43378000	+	0	NA	Intergenic	Intergenic	-22446	NR_146918	105373054		NR_146918	ENSG00000236117	LINC01639	-	long intergenic non-protein coding RNA 1639	ncRNA
155934	chr22	39660551	39661350	+	0	NA	intron (NM_001003406, intron 14 of 35)	intron (NM_001003406, intron 14 of 35)	90197	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
204906	chr7	6151601	6151880	+	0	NA	intron (NM_001365764, intron 14 of 15)	AluSz|SINE|Alu	20397	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
143485	chr20	31067701	31068900	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-189364	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
76324	chr15	74398201	74398650	+	0	NA	Intergenic	AluJb|SINE|Alu	13007	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
48828	chr12	12335921	12336180	+	0	NA	intron (NM_001363613, intron 4 of 4)	AluSx|SINE|Alu	14192	NM_001363613	54682		NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
174	chr1	631771	634200	+	0	NA	promoter-TSS (NR_162149)	promoter-TSS (NR_162149)	-300	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
167735	chr3	131380751	131382400	+	0	NA	promoter-TSS (NM_001171906)	promoter-TSS (NM_001171906)	-96	NM_001171905	131870		NM_152395	ENSG00000198585	NUDT16	-	nudix hydrolase 16	protein-coding
162652	chr3	48896021	48896600	+	0	NA	intron (NM_000387, intron 1 of 8)	AluJo|SINE|Alu	2572	NM_000387	788		NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	solute carrier family 25 member 20	protein-coding
85937	chr16	57140071	57140450	+	0	NA	intron (NM_152727, intron 14 of 15)	AluSq2|SINE|Alu	42290	NM_001354098	80011		NM_024946	ENSG00000172775	PSME3IP1	C16orf94|CDA018|CDA10|FAM192A|NIP30|PIP30	proteasome activator subunit 3 interacting protein 1	protein-coding
23419	chr1	228377171	228377530	+	0	NA	intron (NM_001271223, intron 112 of 115)	intron (NM_001271223, intron 112 of 115)	19759	NR_106800	102465444		NR_106800	ENSG00000284311	MIR6742	hsa-mir-6742	microRNA 6742	ncRNA
120780	chr19	45438321	45438580	+	0	NA	intron (NM_001369412, intron 1 of 9)	intron (NM_001369412, intron 1 of 9)	1796	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
19615	chr1	179897571	179897930	+	0	NA	intron (NM_015602, intron 3 of 9)	intron (NM_015602, intron 3 of 9)	15465	NM_001267578	26092		NM_015602	ENSG00000143337	TOR1AIP1	LAP1|LAP1B|LAP1C|LGMD2Y	torsin 1A interacting protein 1	protein-coding
236546	chrX	72178701	72179300	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-2676	NM_001170747	5303		NM_006223	ENSG00000102309	PIN4	EPVH|PAR14|PAR17|hEPVH|hPar14|hPar17	peptidylprolyl cis/trans isomerase, NIMA-interacting 4	protein-coding
191069	chr6	3377421	3377730	+	0	NA	intron (NM_001382320, intron 1 of 1)	intron (NM_001382320, intron 1 of 1)	-53425	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
85455	chr16	50635971	50636230	+	0	NA	3' UTR (NM_033119, exon 10 of 10)	3' UTR (NM_033119, exon 10 of 10)	-32755	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
134848	chr2	148659091	148659900	+	0	NA	intron (NM_015630, intron 1 of 13)	intron (NM_015630, intron 1 of 13)	14744	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
148540	chr20	64134071	64134750	+	0	NA	Intergenic	Intergenic	-26845	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
223555	chr8	144241521	144241950	+	0	NA	intron (NM_032450, intron 22 of 43)	intron (NM_032450, intron 22 of 43)	21002	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
238355	chrX	149795521	149795850	+	0	NA	Intergenic	L1MCb|LINE|L1	13748	NM_005365	4108		NM_005365	ENSG00000123584	MAGEA9	CT1.9|MAGE9	MAGE family member A9	protein-coding
13494	chr1	114723601	114723800	+	0	NA	intron (NM_001242891, intron 17 of 20)	intron (NM_001242891, intron 17 of 20)	-6929	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
122103	chr19	48760571	48761230	+	0	NA	Intergenic	Intergenic	5376	NM_019113	26291		NM_019113	ENSG00000105550	FGF21	-	fibroblast growth factor 21	protein-coding
67982	chr14	74909551	74910300	+	0	NA	exon (NM_031464, exon 8 of 12)	exon (NM_031464, exon 8 of 12)	12517	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
19774	chr1	182149451	182149630	+	0	NA	Intergenic	Intergenic	-87828	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
66599	chr14	63626451	63627200	+	0	NA	intron (NM_080666, intron 1 of 2)	L1ME3G|LINE|L1	15046	NM_001382427	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
109292	chr19	554651	554950	+	0	NA	Intergenic	MER34C2|LTR|ERV1	10747	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
54645	chr12	92932021	92932280	+	0	NA	Intergenic	AluSx|SINE|Alu	-2855	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
89729	chr16	89427551	89427850	+	0	NA	intron (NR_045839, intron 1 of 9)	AluSz|SINE|Alu	-3218	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
95284	chr17	35519591	35520300	+	0	NA	intron (NM_001363830, intron 2 of 4)	MER49|LTR|ERV1	17916	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
184020	chr5	91311321	91312530	+	0	NA	intron (NR_103549, intron 2 of 2)	AmnSINE1|SINE|5S-Deu-L2	2477	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
169638	chr3	171328321	171328980	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	131755	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
60403	chr13	40963721	40964850	+	0	NA	intron (NM_001370329, intron 2 of 9)	MLT1C|LTR|ERVL-MaLR	17997	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
194500	chr6	33275571	33276150	+	0	NA	exon (NM_022551, exon 3 of 6)	exon (NM_022551, exon 3 of 6)	-1263	NM_003782	8705		NM_003782	ENSG00000235863	B3GALT4	BETA3GALT4|GALT2|GALT4	beta-1,3-galactosyltransferase 4	protein-coding
206453	chr7	32887351	32887980	+	0	NA	intron (NM_015483, intron 1 of 3)	intron (NM_015483, intron 1 of 3)	4095	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
182279	chr5	57226271	57226780	+	0	NA	intron (NM_001127235, intron 3 of 11)	LTR40b|LTR|ERVL	12451	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
14218	chr1	143203271	143203530	+	0	NA	Intergenic	Intergenic	219192	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
45230	chr11	117950051	117950800	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-20972	NM_001206790	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
78855	chr15	100332621	100333230	+	0	NA	intron (NM_139057, intron 2 of 21)	intron (NM_139057, intron 2 of 21)	9050	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
33122	chr10	112184851	112184950	+	0	NA	Intergenic	L1MEc|LINE|L1	-1135	NM_001244949	57678		NM_020918	ENSG00000119927	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
158541	chr3	3998251	3998350	+	0	NA	Intergenic	Intergenic	-197425	NR_149025	100130207		NR_149025	ENSG00000144455	LOC100130207	-	uncharacterized LOC100130207	ncRNA
200348	chr6	133983271	133983750	+	0	NA	intron (NM_004865, intron 4 of 6)	intron (NM_004865, intron 4 of 6)	30286	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
170133	chr3	183350101	183350780	+	0	NA	intron (NM_015078, intron 3 of 29)	intron (NM_015078, intron 3 of 29)	77829	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
21628	chr1	206588671	206589330	+	0	NA	3' UTR (NM_182664, exon 5 of 5)	3' UTR (NM_182664, exon 5 of 5)	23465	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
210757	chr7	100683921	100684830	+	0	NA	intron (NR_164719, intron 17 of 26)	intron (NR_164719, intron 17 of 26)	9875	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
126299	chr2	27244951	27245050	+	0	NA	Intergenic	AluSx|SINE|Alu	18047	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
147025	chr20	53596621	53597430	+	0	NA	Intergenic	Intergenic	-3186	NM_006526	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
59248	chr13	23964001	23964280	+	0	NA	Intergenic	Intergenic	-14825	NR_073430	400110		NM_207439		ANKRD20A19P	-	ankyrin repeat domain 20 family member A19, pseudogene	pseudo
99641	chr17	50623501	50623700	+	0	NA	intron (NM_198377, intron 34 of 36)	intron (NM_198377, intron 34 of 36)	-11281	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
115140	chr19	14388971	14389950	+	0	NA	intron (NM_001025160, intron 3 of 18)	AluSx1|SINE|Alu	8016	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
215646	chr8	299151	299650	+	0	NA	Intergenic	Intergenic	66944	NM_001042416	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
219432	chr8	71847851	71847950	+	0	NA	intron (NR_033651, intron 1 of 2)	intron (NR_033651, intron 1 of 2)	-3488	NM_005098	9242		NM_005098	ENSG00000178860	MSC	ABF-1|ABF1|MYOR|bHLHa22	musculin	protein-coding
148273	chr20	63690551	63691430	+	0	NA	intron (NM_032957, intron 27 of 34)	intron (NM_032957, intron 27 of 34)	-5662	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
191363	chr6	7260871	7261730	+	0	NA	Intergenic	CpG	51899	NM_003144	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
188741	chr5	157541721	157542830	+	0	NA	intron (NM_033274, intron 3 of 22)	intron (NM_033274, intron 3 of 22)	33500	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
178584	chr4	151325201	151325600	+	0	NA	5' UTR (NM_001378131, exon 1 of 19)	5' UTR (NM_001378131, exon 1 of 19)	205	NM_001378121	152503		NM_001009555	ENSG00000109686	SH3D19	EBP|EVE1|Eve-1|Kryn|SH3P19	SH3 domain containing 19	protein-coding
76968	chr15	78173201	78173580	+	0	NA	intron (NM_001199377, intron 13 of 13)	intron (NM_001199377, intron 13 of 13)	24028	NM_005530	3419		NM_005530	ENSG00000166411	IDH3A	RP90	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein-coding
75875	chr15	69720551	69720850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-114534	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
231471	chr9	131335571	131335730	+	0	NA	Intergenic	AluJo|SINE|Alu	-38001	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
227231	chr9	89234601	89234830	+	0	NA	Intergenic	Intergenic	-55897	NM_016848	53358		NM_016848	ENSG00000148082	SHC3	N-Shc|NSHC|RAI|SHCC	SHC adaptor protein 3	protein-coding
88475	chr16	85061651	85061950	+	0	NA	intron (NM_001286566, intron 1 of 11)	intron (NM_001286566, intron 1 of 11)	-1412	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
32079	chr10	101123271	101124450	+	0	NA	intron (NR_130724, intron 2 of 2)	intron (NR_130724, intron 2 of 2)	7286	NR_130723	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
141972	chr20	1329001	1329430	+	0	NA	promoter-TSS (NM_080489)	promoter-TSS (NM_080489)	-76	NM_080489	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
152126	chr22	19955201	19956330	+	0	NA	intron (NM_001135162, intron 1 of 5)	intron (NM_001135162, intron 1 of 5)	4247	NM_001135162	1312		NM_000754	ENSG00000093010	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
27882	chr10	41868171	41868330	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	499795	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
180275	chr5	1796601	1797050	+	0	NA	Intergenic	Intergenic	3012	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
40259	chr11	63763851	63764150	+	0	NA	intron (NM_001144936, intron 4 of 4)	CpG	4775	NM_001144936	65998		NM_023941	ENSG00000188070	ZFTA	C11orf95	zinc finger translocation associated	protein-coding
225463	chr9	35477221	35477750	+	0	NA	intron (NR_003581, intron 14 of 17)	intron (NR_003581, intron 14 of 17)	-12626	NR_052015	9853		NM_014806	ENSG00000198853	RUSC2	Iporin|MRT61	RUN and SH3 domain containing 2	protein-coding
171514	chr3	196639051	196640400	+	0	NA	promoter-TSS (NM_198565)	promoter-TSS (NM_198565)	31	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
239129	chrY	11309171	11309730	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1112140	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
85306	chr16	49461371	49461730	+	0	NA	Intergenic	Intergenic	57035	NR_144553	1596		NR_144553	ENSG00000260089	ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
109127	chr18	80157771	80158580	+	0	NA	3' UTR (NM_032510, exon 3 of 3)	3' UTR (NM_032510, exon 3 of 3)	10251	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
224065	chr9	3730501	3730900	+	0	NA	Intergenic	Intergenic	62614	NR_121586	101929302		NR_121586	ENSG00000232104	RFX3-DT	CVAT7|RFX3-AS1	RFX3 divergent transcript	ncRNA
211423	chr7	105055801	105056200	+	0	NA	intron (NM_182931, intron 3 of 26)	intron (NM_182931, intron 3 of 26)	41795	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
88323	chr16	84368501	84368700	+	0	NA	promoter-TSS (NM_001286527)	promoter-TSS (NM_001286527)	62	NM_014861	9914		NM_014861	ENSG00000064270	ATP2C2	SPCA2	ATPase secretory pathway Ca2+ transporting 2	protein-coding
135412	chr2	161090321	161090830	+	0	NA	Intergenic	Intergenic	-46380	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
164531	chr3	63936401	63936880	+	0	NA	intron (NM_001177387, intron 3 of 12)	intron (NM_001177387, intron 3 of 12)	24528	NM_001377406	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
172561	chr4	2415801	2416000	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	2745	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
3334	chr1	15428271	15429530	+	0	NA	3' UTR (NM_024329, exon 4 of 4)	3' UTR (NM_024329, exon 4 of 4)	-9543	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
221881	chr8	128540021	128541600	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	23869	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
164816	chr3	70959651	70960200	+	0	NA	intron (NM_001244810, intron 20 of 20)	intron (NM_001244810, intron 20 of 20)	104999	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
127307	chr2	38760651	38761150	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-9406	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
167869	chr3	134488051	134488380	+	0	NA	intron (NM_001353112, intron 2 of 13)	MER1B|DNA|hAT-Charlie	2042	NM_001353125	80254		NM_025180	ENSG00000182923	CEP63	SCKL6	centrosomal protein 63	protein-coding
202812	chr6	159677701	159678700	+	0	NA	TTS (NM_001322817)	TTS (NM_001322817)	15041	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
216045	chr8	9672351	9673000	+	0	NA	intron (NM_003747, intron 3 of 26)	(A)n|Simple_repeat|Simple_repeat	-68997	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
228811	chr9	111937621	111938730	+	0	NA	Intergenic	Intergenic	6075	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
6048	chr1	27129121	27129380	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	25875	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
11631	chr1	91748971	91749330	+	0	NA	intron (NR_036634, intron 5 of 17)	intron (NR_036634, intron 5 of 17)	137001	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
97886	chr17	45104451	45104750	+	0	NA	intron (NM_021079, intron 10 of 11)	intron (NM_021079, intron 10 of 11)	9833	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
15639	chr1	150696171	150696330	+	0	NA	intron (NM_018178, intron 1 of 4)	L2c|LINE|L2	904	NM_018178	55204		NM_018178	ENSG00000143457	GOLPH3L	GPP34R	golgi phosphoprotein 3 like	protein-coding
189057	chr5	170249401	170249900	+	0	NA	intron (NM_005565, intron 20 of 20)	intron (NM_005565, intron 20 of 20)	16644	NM_001305393	133874		NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
212458	chr7	128454151	128454450	+	0	NA	Intergenic	MIR|SINE|MIR	-1530	NM_001098786	29923		NM_013332	ENSG00000135245	HILPDA	C7orf68|HIG-2|HIG2	hypoxia inducible lipid droplet associated	protein-coding
34705	chr10	133453621	133453880	+	0	NA	promoter-TSS (NR_149718)	promoter-TSS (NR_149718)	-178	NR_149718	619207		NM_001033584	ENSG00000214279	SCART1	-	scavenger receptor family member expressed on T cells 1	protein-coding
170716	chr3	187993021	187993280	+	0	NA	Intergenic	Intergenic	-16743	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
140127	chr2	231532371	231532900	+	0	NA	Intergenic	Intergenic	-2190	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
233336	chr9	137441171	137442330	+	0	NA	promoter-TSS (NM_001033113)	promoter-TSS (NM_001033113)	-393	NM_001033113	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
228536	chr9	101107701	101107930	+	0	NA	intron (NM_207299, intron 1 of 7)	L1PA2|LINE|L1	-77220	NM_017753	54886		NM_017753	ENSG00000148123	PLPPR1	LPPR1|PRG-3|PRG3	phospholipid phosphatase related 1	protein-coding
215990	chr8	8879771	8880130	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	13680	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
28543	chr10	50545051	50545380	+	0	NA	intron (NM_147156, intron 2 of 10)	intron (NM_147156, intron 2 of 10)	78741	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
131255	chr2	96026271	96026430	+	0	NA	intron (NM_001321530, intron 9 of 20)	intron (NM_001321530, intron 9 of 20)	8895	NM_001321530	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
155078	chr22	37559351	37559450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1080	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
92870	chr17	16408451	16408700	+	0	NA	Intergenic	Intergenic	-6996	NM_016113	51393		NM_016113	ENSG00000187688	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel subfamily V member 2	protein-coding
77931	chr15	89322821	89323130	+	0	NA	intron (NM_002693, intron 13 of 22)	intron (NM_002693, intron 13 of 22)	3835	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
62534	chr13	99575021	99575280	+	0	NA	Intergenic	Intergenic	-1962	NR_126390	104355149		NR_126390		LINC01039	-	long intergenic non-protein coding RNA 1039	ncRNA
213161	chr7	131606601	131606800	+	0	NA	Intergenic	Intergenic	-50072	NM_005397	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
117854	chr19	32340221	32340600	+	0	NA	Intergenic	Intergenic	-5200	NM_014910	22847		NM_014910	ENSG00000168813	ZNF507	Zfp507	zinc finger protein 507	protein-coding
17990	chr1	160517301	160517700	+	0	NA	intron (NM_001184714, intron 1 of 7)	L1PA10|LINE|L1	5755	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
127801	chr2	44342871	44343100	+	0	NA	intron (NM_001374275, intron 5 of 14)	intron (NM_001374275, intron 5 of 14)	16764	NM_001042385	9581		NM_006036	ENSG00000138078	PREPL	CMS22	prolyl endopeptidase like	protein-coding
179808	chr5	415021	416030	+	0	NA	intron (NR_165159, intron 7 of 13)	intron (NR_165159, intron 7 of 13)	27635	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
177761	chr4	122666721	122667200	+	0	NA	intron (NR_104126, intron 10 of 10)	intron (NR_104126, intron 10 of 10)	-45894	NM_021803	59067		NM_021803	ENSG00000138684	IL21	CVID11|IL-21|Za11	interleukin 21	protein-coding
182246	chr5	57176301	57177180	+	0	NA	intron (NM_001331037, intron 2 of 12)	intron (NM_001331037, intron 2 of 12)	1292	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
135741	chr2	169548171	169548430	+	0	NA	intron (NM_001322048, intron 6 of 13)	intron (NM_001322048, intron 6 of 13)	25565	NM_024622	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
71690	chr15	20147371	20147750	+	0	NA	Intergenic	REP522|Satellite|telo	-135184	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
99010	chr17	48816671	48817650	+	0	NA	promoter-TSS (NM_001130918)	promoter-TSS (NM_001130918)	69	NM_001130918	284076		NM_173623	ENSG00000170703	TTLL6	TTL.6	tubulin tyrosine ligase like 6	protein-coding
129768	chr2	71067051	71067150	+	0	NA	Intergenic	MIRc|SINE|MIR	-1196	NM_001330426	55577		NM_017567	ENSG00000124357	NAGK	GNK|HSA242910	N-acetylglucosamine kinase	protein-coding
192889	chr6	27496551	27496650	+	0	NA	Intergenic	Intergenic	-23482	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
36606	chr11	6743221	6743630	+	0	NA	Intergenic	Intergenic	-21546	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
221387	chr8	123398301	123398500	+	0	NA	Intergenic	AluSx|SINE|Alu	-1953	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
26717	chr10	22669171	22669750	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	44648	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
173055	chr4	5893051	5893150	+	0	NA	promoter-TSS (NM_001014809)	promoter-TSS (NM_001014809)	-14	NM_001014809	1400		NM_001313	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
2521	chr1	9708721	9709200	+	0	NA	intron (NM_001350234, intron 2 of 23)	L1ME3Cz|LINE|L1	17493	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
111350	chr19	3667521	3667800	+	0	NA	intron (NM_001300849, intron 1 of 16)	intron (NM_001300849, intron 1 of 16)	32808	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
55350	chr12	104063721	104065330	+	0	NA	promoter-TSS (NM_031302)	promoter-TSS (NM_031302)	-6	NM_013320	29915		NM_013320	ENSG00000111727	HCFC2	HCF-2|HCF2	host cell factor C2	protein-coding
160539	chr3	30667121	30668030	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	60974	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
17965	chr1	160438971	160439130	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	38486	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
177490	chr4	114004571	114005100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-25188	NM_024590	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
214937	chr7	151696271	151696430	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	39913	NM_001363698	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
113003	chr19	7906101	7906680	+	0	NA	intron (NM_001297555, intron 2 of 11)	L2a|LINE|L2	2513	NM_145185	5609		NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
71665	chr15	17080701	17080980	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-3201904	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
103519	chr17	78473621	78473880	+	0	NA	intron (NM_173628, intron 54 of 80)	intron (NM_173628, intron 54 of 80)	-11160	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
146859	chr20	51444251	51444650	+	0	NA	intron (NM_173091, intron 6 of 9)	intron (NM_173091, intron 6 of 9)	8527	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
199399	chr6	116445251	116445350	+	0	NA	TTS (NR_136524)	TTS (NR_136524)	-16075	NM_001276460	441168		NM_001010919	ENSG00000188820	CALHM6	C6orf187|FAM26F|INAM|dJ93H18.5	calcium homeostasis modulator family member 6	protein-coding
233517	chrM	8801	12400	+	0	NA	Intergenic	Intergenic	-3086	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
228317	chr9	98205351	98206380	+	0	NA	intron (NM_018421, intron 9 of 12)	intron (NM_018421, intron 9 of 12)	7686	NM_001267572	55357		NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
94955	chr17	32111321	32111680	+	0	NA	Intergenic	Intergenic	-30954	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
66825	chr14	64761801	64762800	+	0	NA	intron (NM_001355436, intron 32 of 35)	intron (NM_001355436, intron 32 of 35)	23386	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
51417	chr12	52012651	52013550	+	0	NA	intron (NM_001271856, intron 3 of 6)	AluY|SINE|Alu	2608	NM_001271856	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
106577	chr18	21897801	21898000	+	0	NA	Intergenic	Intergenic	-66494	NR_110369	102723167		NR_110369	ENSG00000265142	MIR133A1HG	MIR1-2HG	MIR133A1 host gene	ncRNA
195487	chr6	37142121	37142380	+	0	NA	Intergenic	Intergenic	-27902	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
236579	chrX	72778251	72778350	+	0	NA	non-coding (NR_026594, exon 1 of 1)	non-coding (NR_026594, exon 1 of 1)	1227	NR_026594	653687		NR_026594		FAM226B	CXorf50B|LINC00246B|NCRNA00246B	family with sequence similarity 226 member B	ncRNA
5199	chr1	24960221	24960900	+	0	NA	intron (NM_001031680, intron 1 of 5)	L3b|LINE|CR1	4450	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
121030	chr19	45806421	45806880	+	0	NA	intron (NM_030785, intron 2 of 5)	AluY|SINE|Alu	8658	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
39819	chr11	62028701	62029100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-61266	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
49887	chr12	39365501	39365700	+	0	NA	intron (NM_001378440, intron 6 of 36)	intron (NM_001378440, intron 6 of 36)	77520	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
79586	chr16	1006721	1007180	+	0	NA	Intergenic	CpG	25180	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
94437	chr17	29154671	29155950	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	-14921	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
48730	chr12	10710571	10710730	+	0	NA	intron (NM_003651, intron 5 of 9)	Charlie1b|DNA|hAT-Charlie	12673	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
188412	chr5	154076571	154076730	+	0	NA	Intergenic	MIR3|SINE|MIR	37683	NM_005927	4238		NM_005927	ENSG00000037749	MFAP3	-	microfibril associated protein 3	protein-coding
174104	chr4	36187851	36188380	+	0	NA	intron (NR_146894, intron 7 of 32)	intron (NR_146894, intron 7 of 32)	55824	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
233491	chr9	138022421	138022830	+	0	NA	intron (NM_000718, intron 18 of 45)	intron (NM_000718, intron 18 of 45)	22446	NR_121582	101928786		NR_121582		LOC101928786	-	uncharacterized LOC101928786	ncRNA
62115	chr13	95456921	95457450	+	0	NA	intron (NM_182848, intron 1 of 4)	intron (NM_182848, intron 1 of 4)	23586	NM_182848	9071		NM_006984	ENSG00000134873	CLDN10	CPETRL3|HELIX|OSP-L|OSPL	claudin 10	protein-coding
120852	chr19	45521771	45522380	+	0	NA	intron (NM_003370, intron 4 of 12)	intron (NM_003370, intron 4 of 12)	14596	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
157279	chr22	44109951	44110050	+	0	NA	intron (NM_001243386, intron 3 of 11)	AluYa5|SINE|Alu	40883	NM_001243385	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
143992	chr20	32971701	32973450	+	0	NA	Intergenic	MER81|DNA|hAT-Blackjack	31858	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
8244	chr1	39764701	39765030	+	0	NA	TTS (NM_001195007)	TTS (NM_001195007)	6483	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
181482	chr5	42948901	42950120	+	0	NA	Intergenic	Intergenic	43823	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
57608	chr12	122470701	122471080	+	0	NA	TTS (NM_001350935)	TTS (NM_001350935)	30042	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
41933	chr11	67298921	67299180	+	0	NA	intron (NM_207354, intron 6 of 14)	intron (NM_207354, intron 6 of 14)	-4480	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
158325	chr22	50439421	50439680	+	0	NA	intron (NM_001351641, intron 19 of 23)	intron (NM_001351641, intron 19 of 23)	32108	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
69577	chr14	97120521	97121030	+	0	NA	Intergenic	Intergenic	-34082	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
155162	chr22	37683951	37684450	+	0	NA	Intergenic	AluSc|SINE|Alu	-2143	NM_024313	79159		NM_024313	ENSG00000273899	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
40779	chr11	64879851	64880150	+	0	NA	promoter-TSS (NM_001282445)	promoter-TSS (NM_001282445)	-287	NM_001282445	10938		NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH domain containing 1	protein-coding
233760	chrX	1399051	1399600	+	0	NA	TTS (NR_130733)	TTS (NR_130733)	-1206	NR_026711	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
98784	chr17	48141701	48141900	+	0	NA	intron (NM_001075099, intron 11 of 12)	L2b|LINE|L2	14711	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
90055	chr16	89935501	89935900	+	0	NA	exon (NM_006086, exon 4 of 4)	exon (NM_006086, exon 4 of 4)	12358	NM_006086	10381		NM_006086	ENSG00000258947	TUBB3	CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4	tubulin beta 3 class III	protein-coding
23843	chr1	234617101	234617300	+	0	NA	Intergenic	Intergenic	-7675	NM_182972	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
68354	chr14	77710301	77710750	+	0	NA	intron (NM_001267863, intron 1 of 3)	intron (NM_001267863, intron 1 of 3)	2422	NM_031210	81892		NM_031210	ENSG00000119705	SLIRP	C14orf156|DC50|PD04872	SRA stem-loop interacting RNA binding protein	protein-coding
42905	chr11	73381401	73382530	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	5297	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
165410	chr3	97910071	97911400	+	0	NA	intron (NM_153605, intron 15 of 21)	L1PA3|LINE|L1	61696	NM_153182	84864		NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
76094	chr15	72491801	72492380	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	17760	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
127665	chr2	43171801	43172330	+	0	NA	Intergenic	Intergenic	54541	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
132650	chr2	108732501	108733400	+	0	NA	intron (NM_006267, intron 4 of 28)	AluSx|SINE|Alu	13468	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
121217	chr19	46619851	46620550	+	0	NA	TTS (NM_000960)	TTS (NM_000960)	4889	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
37971	chr11	34820051	34820350	+	0	NA	Intergenic	LTR75|LTR|ERVL	-95930	NM_001166158	8050		NM_003477	ENSG00000110435	PDHX	DLDBP|E3BP|OPDX|PDHXD|PDX1|proX	pyruvate dehydrogenase complex component X	protein-coding
191110	chr6	4022201	4023100	+	0	NA	intron (NR_146785, intron 1 of 20)	intron (NR_146785, intron 1 of 20)	1350	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
232156	chr9	134070451	134071230	+	0	NA	Intergenic	L2a|LINE|L2	-2814	NM_007371	8019		NM_007371	ENSG00000169925	BRD3	FSHRG2|ORFX|RING3L	bromodomain containing 3	protein-coding
19254	chr1	172676521	172676900	+	0	NA	Intergenic	MER41A|LTR|ERV1	17607	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
37302	chr11	14746751	14747250	+	0	NA	intron (NM_001363569, intron 1 of 15)	MSTB|LTR|ERVL-MaLR	103196	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
218250	chr8	42154001	42154580	+	0	NA	intron (NM_006803, intron 1 of 8)	intron (NM_006803, intron 1 of 8)	1227	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
63943	chr14	22081321	22081780	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	351203	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
21446	chr1	205472801	205473200	+	0	NA	Intergenic	Intergenic	-16914	NR_103783								
24471	chr1	244052171	244052930	+	0	NA	promoter-TSS (NM_006352)	promoter-TSS (NM_006352)	-655	NM_006352	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
159159	chr3	12796371	12797330	+	0	NA	intron (NM_012298, intron 1 of 12)	CpG	170	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
97201	chr17	42698621	42699080	+	0	NA	exon (NM_003632, exon 24 of 24)	exon (NM_003632, exon 24 of 24)	9301	NR_106838	102466195		NR_106838	ENSG00000275273	MIR6780A	hsa-mir-6780a	microRNA 6780a	ncRNA
114278	chr19	11587421	11588380	+	0	NA	Intergenic	Intergenic	-8925	NM_001111035	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
65374	chr14	50619571	50619800	+	0	NA	intron (NM_181598, intron 8 of 12)	intron (NM_181598, intron 8 of 12)	48621	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
208062	chr7	56079271	56080130	+	0	NA	TTS (NM_001258459)	TTS (NM_001258459)	13252	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
187126	chr5	140420471	140420630	+	0	NA	intron (NM_020690, intron 1 of 35)	L1M4|LINE|L1	18717	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
222061	chr8	130310351	130310880	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-14082	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
223632	chr8	144330921	144331230	+	0	NA	3' UTR (NM_031309, exon 2 of 2)	3' UTR (NM_031309, exon 2 of 2)	-4223	NM_012079	8694		NM_012079	ENSG00000185000	DGAT1	ARAT|ARGP1|DGAT|DIAR7	diacylglycerol O-acyltransferase 1	protein-coding
178036	chr4	139558021	139558280	+	0	NA	Intergenic	Intergenic	-1381	NM_001306199	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
132900	chr2	111381851	111381950	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	-60809	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
198180	chr6	96465401	96465600	+	0	NA	Intergenic	Intergenic	-56306	NM_015323	23376		NM_015323	ENSG00000014123	UFL1	KIAA0776|Maxer|NLBP|RCAD	UFM1 specific ligase 1	protein-coding
128287	chr2	54599771	54600500	+	0	NA	intron (NM_178313, intron 2 of 30)	intron (NM_178313, intron 2 of 30)	41741	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
174472	chr4	39814701	39815950	+	0	NA	Intergenic	AluY|SINE|Alu	117189	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
20269	chr1	194060721	194060980	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	756105	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
56746	chr12	120140551	120140850	+	0	NA	intron (NM_006836, intron 45 of 57)	intron (NM_006836, intron 45 of 57)	14799	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
43528	chr11	82732671	82733180	+	0	NA	exon (NM_175885, exon 1 of 1)	exon (NM_175885, exon 1 of 1)	939	NM_175885	220382		NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
19432	chr1	174262701	174263050	+	0	NA	intron (NM_001366447, intron 7 of 20)	LTR41B|LTR|ERVL	-12225	NM_001366449	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
107056	chr18	32413071	32413230	+	0	NA	intron (NM_022751, intron 1 of 5)	intron (NM_022751, intron 1 of 5)	57732	NM_001242409	64762		NM_022751	ENSG00000141441	GAREM1	C18orf11|FAM59A|GAREM|Gm944	GRB2 associated regulator of MAPK1 subtype 1	protein-coding
37748	chr11	31819121	31819380	+	0	NA	intron (NR_033971, intron 1 of 2)	intron (NR_033971, intron 1 of 2)	-1289	NM_001368919	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
68633	chr14	89724551	89725400	+	0	NA	Intergenic	Intergenic	-105810	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
161187	chr3	39135521	39135930	+	0	NA	intron (NR_159495, intron 21 of 27)	MIR|SINE|MIR	-2481	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
22644	chr1	223723451	223723750	+	0	NA	intron (NM_001748, intron 2 of 20)	intron (NM_001748, intron 2 of 20)	11061	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
12737	chr1	109555401	109556450	+	0	NA	intron (NM_006496, intron 1 of 8)	intron (NM_006496, intron 1 of 8)	7310	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
228084	chr9	96411551	96412100	+	0	NA	intron (NM_153695, intron 1 of 4)	AluSx3|SINE|Alu	6545	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
238967	chrX	155262901	155263330	+	0	NA	intron (NM_171998, intron 1 of 1)	intron (NM_171998, intron 1 of 1)	1376	NM_171998	116442		NM_171998	ENSG00000155961	RAB39B	BGMR|MRX72|WSMN|WSN|XLID72	RAB39B, member RAS oncogene family	protein-coding
58370	chr12	131734701	131735300	+	0	NA	intron (NM_001261411, intron 7 of 18)	intron (NM_001261411, intron 7 of 18)	23910	NM_001261411	6433		NM_004592	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor SWAP	protein-coding
108969	chr18	79578101	79578300	+	0	NA	Intergenic	Intergenic	-1082	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
72039	chr15	28702471	28702630	+	0	NA	promoter-TSS (NR_135833)	promoter-TSS (NR_135833)	-178	NR_135833	101928042		NR_135833		ARHGAP11A-DT	-	ARHGAP11A divergent transcript	ncRNA
26925	chr10	26476571	26476930	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	38409	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
91442	chr17	4771601	4772250	+	0	NA	promoter-TSS (NM_003963)	promoter-TSS (NM_003963)	39	NM_003963	9032		NM_003963	ENSG00000142484	TM4SF5	-	transmembrane 4 L six family member 5	protein-coding
129796	chr2	71336851	71337150	+	0	NA	intron (NM_014497, intron 1 of 27)	intron (NM_014497, intron 1 of 27)	5218	NM_014497	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
190885	chr6	2733321	2733600	+	0	NA	intron (NM_001347872, intron 2 of 12)	intron (NM_001347872, intron 2 of 12)	17462	NM_001012418	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
183975	chr5	88692021	88692630	+	0	NA	intron (NR_146284, intron 1 of 3)	intron (NR_146284, intron 1 of 3)	-1284	NR_152232	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
221014	chr8	116406201	116406800	+	0	NA	Intergenic	Intergenic	-81441	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
59951	chr13	31424121	31424470	+	0	NA	Intergenic	Intergenic	224320	NM_194318	145173		NM_194318	ENSG00000187676	B3GLCT	B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	beta 3-glucosyltransferase	protein-coding
50339	chr12	47084221	47084580	+	0	NA	intron (NM_138371, intron 1 of 3)	MER47A|DNA|TcMar-Tigger	-4441	NM_001370299	347902		NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
174565	chr4	40224021	40224380	+	0	NA	intron (NM_001278360, intron 2 of 3)	L1ME3G|LINE|L1	27169	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
35835	chr11	2298721	2299700	+	0	NA	intron (NM_001329958, intron 3 of 3)	intron (NM_001329958, intron 3 of 3)	2708	NM_001329958	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
168117	chr3	138815001	138815750	+	0	NA	intron (NM_006219, intron 1 of 23)	AluJb|SINE|Alu	19553	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
70162	chr14	100306201	100308250	+	0	NA	promoter-TSS (NR_029906)	promoter-TSS (NR_029906)	-634	NR_029906	442910		NR_029906	ENSG00000198984	MIR345	MIRN345|hsa-mir-345|mir-345	microRNA 345	ncRNA
199093	chr6	111667151	111667400	+	0	NA	intron (NM_001370529, intron 11 of 11)	AluJr|SINE|Alu	-61001	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
162535	chr3	48623521	48623780	+	0	NA	Intergenic	AluJb|SINE|Alu	-1881	NM_001008269	440955		NM_001008269	ENSG00000183396	TMEM89	-	transmembrane protein 89	protein-coding
215679	chr8	736871	737800	+	0	NA	promoter-TSS (NM_001346810)	promoter-TSS (NM_001346810)	-293	NR_073397	9228		NM_004745	ENSG00000198010	DLGAP2	C8orf68|DAP2|ERICH1-AS1|SAPAP2	DLG associated protein 2	protein-coding
113309	chr19	8572371	8572830	+	0	NA	intron (NM_012335, intron 1 of 27)	intron (NM_012335, intron 1 of 27)	4842	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
88093	chr16	81516621	81517030	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-17077	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
73555	chr15	44286701	44287400	+	0	NA	Intergenic	Intergenic	-1669	NR_157849	113201		NM_138423	ENSG00000166734	GOLM2	CASC4|H63	golgi membrane protein 2	protein-coding
65	chr1	278621	279080	+	0	NA	Intergenic	Intergenic	-72253	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
106320	chr18	12919651	12920030	+	0	NA	Intergenic	L1PB1|LINE|L1	-28144	NM_031216	81929		NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
86019	chr16	57483751	57484400	+	0	NA	intron (NM_001369618, intron 1 of 7)	intron (NM_001369618, intron 1 of 7)	2418	NM_001369618	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
22145	chr1	212039671	212039830	+	0	NA	intron (NM_001286229, intron 1 of 12)	Tigger3b|DNA|TcMar-Tigger	4002	NM_016448	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
222684	chr8	141253351	141253650	+	0	NA	intron (NM_001286646, intron 2 of 8)	intron (NM_001286646, intron 2 of 8)	-1067	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
29397	chr10	70144771	70146200	+	0	NA	promoter-TSS (NR_073595)	promoter-TSS (NR_073595)	-757	NR_073595	219743		NM_173555	ENSG00000156521	TYSND1	NET41	trypsin like peroxisomal matrix peptidase 1	protein-coding
143437	chr20	30285121	30285380	+	0	NA	intron (NR_145432, intron 1 of 1)	intron (NR_145432, intron 1 of 1)	1287	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
197567	chr6	79686821	79687080	+	0	NA	intron (NM_031469, intron 2 of 3)	HAL1ME|LINE|L1	55621	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
177389	chr4	112183221	112183880	+	0	NA	intron (NM_152400, intron 1 of 1)	intron (NM_152400, intron 1 of 1)	38096	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
166463	chr3	114223001	114223780	+	0	NA	Intergenic	MIRc|SINE|MIR	14188	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
180524	chr5	14450001	14450280	+	0	NA	intron (NR_134469, intron 34 of 56)	intron (NR_134469, intron 34 of 56)	-13843	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
167787	chr3	133448351	133449250	+	0	NA	non-coding (NR_135278, exon 3 of 5)	non-coding (NR_135278, exon 3 of 5)	6976	NR_135278	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
105773	chr18	2805451	2805750	+	0	NA	TTS (NM_015295)	TTS (NM_015295)	-41406	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
199480	chr6	118616551	118616850	+	0	NA	intron (NM_206921, intron 2 of 5)	AluSg|SINE|Alu	34891	NM_206921	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
1056	chr1	1897501	1898400	+	0	NA	Intergenic	AluJb|SINE|Alu	6770	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
96131	chr17	39658201	39658800	+	0	NA	exon (NM_006804, exon 6 of 15)	exon (NM_006804, exon 6 of 15)	-6849	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
78380	chr15	91749371	91749750	+	0	NA	Intergenic	(GTGGTG)n|Simple_repeat|Simple_repeat	-104148	NM_013272	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
212981	chr7	130979221	130979480	+	0	NA	intron (NR_109851, intron 4 of 5)	intron (NR_109851, intron 4 of 5)	65886	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
19535	chr1	178310671	178310930	+	0	NA	intron (NM_170692, intron 3 of 17)	MER91B|DNA|hAT-Tip100	-30651	NM_004841	9462		NM_004841	ENSG00000075391	RASAL2	NGAP	RAS protein activator like 2	protein-coding
185444	chr5	131253821	131254400	+	0	NA	Intergenic	L1PA6|LINE|L1	-9943	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
4516	chr1	21781901	21782500	+	0	NA	intron (NM_001350166, intron 1 of 26)	intron (NM_001350166, intron 1 of 26)	949	NM_001350164	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
228805	chr9	111911471	111912030	+	0	NA	intron (NM_003358, intron 1 of 8)	AluJb|SINE|Alu	14936	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
190331	chr5	179626451	179627050	+	0	NA	intron (NM_001364226, intron 1 of 13)	intron (NM_001364226, intron 1 of 13)	-2150	NM_001364237	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
158459	chr22	50642321	50642850	+	0	NA	Intergenic	Intergenic	-14433	NM_001085427	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
64663	chr14	31562621	31562880	+	0	NA	intron (NM_025152, intron 2 of 10)	AluY|SINE|Alu	1346	NR_120408	80224		NM_025152	ENSG00000151413	NUBPL	C14orf127|IND1|MC1DN21|huInd1	NUBP iron-sulfur cluster assembly factor, mitochondrial	protein-coding
63813	chr14	21443371	21443530	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	-6175	NM_020920	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
169591	chr3	170909671	170910100	+	0	NA	Intergenic	AluJb|SINE|Alu	-1248	NM_020390	56648		NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
96838	chr17	41972871	41974230	+	0	NA	exon (NM_001330216, exon 4 of 4)	exon (NM_001330216, exon 4 of 4)	5753	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
190004	chr5	177474471	177474630	+	0	NA	promoter-TSS (NM_001363541)	promoter-TSS (NM_001363541)	-916	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
28088	chr10	43379451	43379950	+	0	NA	Intergenic	Intergenic	8056	NM_001184963	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
175699	chr4	77074401	77075600	+	0	NA	promoter-TSS (NM_001348133)	promoter-TSS (NM_001348133)	-90	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
31340	chr10	93073101	93073300	+	0	NA	promoter-TSS (NM_000783)	promoter-TSS (NM_000783)	-275	NM_057157	1592		NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	cytochrome P450 family 26 subfamily A member 1	protein-coding
66747	chr14	64513151	64513730	+	0	NA	TTS (NR_110550)	TTS (NR_110550)	-8227	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
121503	chr19	47162471	47162830	+	0	NA	intron (NR_027280, intron 5 of 8)	intron (NR_027280, intron 5 of 8)	31815	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
91545	chr17	5030901	5032150	+	0	NA	Intergenic	Intergenic	3901	NM_017986	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
234078	chrX	8879851	8879950	+	0	NA	Intergenic	L2c|LINE|L2	-78517	NM_174951	171482		NM_174951	ENSG00000183304	FAM9A	TEX39A	family with sequence similarity 9 member A	protein-coding
14851	chr1	146380451	146380750	+	0	NA	Intergenic	AluJo|SINE|Alu	3793	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
4442	chr1	21302921	21303180	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	9760	NR_038404	100506801		NR_038404	ENSG00000231105	ECE1-AS1	-	ECE1 antisense RNA 1	ncRNA
181726	chr5	50683621	50683880	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	16336	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
134910	chr2	149587171	149588480	+	0	NA	promoter-TSS (NM_015702)	promoter-TSS (NM_015702)	-50	NM_015702	27249		NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	metabolism of cobalamin associated D	protein-coding
203304	chr6	170085771	170086400	+	0	NA	Intergenic	Intergenic	-74557	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
138050	chr2	201431851	201432750	+	0	NA	intron (NM_015049, intron 1 of 15)	intron (NM_015049, intron 1 of 15)	19158	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
105674	chr18	2639401	2640000	+	0	NA	Intergenic	Intergenic	15695	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
113530	chr19	10135871	10136450	+	0	NA	exon (NM_001379, exon 37 of 40)	exon (NM_001379, exon 37 of 40)	-16261	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
228661	chr9	107285401	107285600	+	0	NA	intron (NM_001244713, intron 1 of 9)	intron (NM_001244713, intron 1 of 9)	731	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
220100	chr8	94436571	94437330	+	0	NA	promoter-TSS (NM_001205263)	promoter-TSS (NM_001205263)	-6	NM_001256141	100861412		NM_001256141	ENSG00000265817	FSBP	-	fibrinogen silencer binding protein	protein-coding
197710	chr6	85681001	85681200	+	0	NA	Intergenic	AluY|SINE|Alu	-2367	NR_003038	387066		NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG	small nucleolar RNA host gene 5	ncRNA
203031	chr6	163752071	163752230	+	0	NA	Intergenic	Intergenic	-80666	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
202662	chr6	158780451	158780980	+	0	NA	intron (NM_003379, intron 6 of 12)	intron (NM_003379, intron 6 of 12)	-15962	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
169417	chr3	161220251	161220350	+	0	NA	promoter-TSS (NM_001320227)	promoter-TSS (NM_001320227)	-990	NM_001320227	51068		NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
97861	chr17	44987021	44988300	+	0	NA	Intergenic	Intergenic	-19357	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
73234	chr15	41665271	41666130	+	0	NA	intron (NM_001164273, intron 1 of 23)	L1MB7|LINE|L1	5288	NM_001080541	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
120606	chr19	45027001	45027400	+	0	NA	intron (NM_006509, intron 6 of 10)	AluY|SINE|Alu	-11845	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
222783	chr8	141988251	141988550	+	0	NA	Intergenic	Intergenic	-187939	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
164666	chr3	66971871	66972750	+	0	NA	Intergenic	Intergenic	-25997	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
73452	chr15	43368401	43369400	+	0	NA	intron (NM_001372080, intron 3 of 5)	intron (NM_001372080, intron 3 of 5)	1160	NM_152455	146050		NM_152455	ENSG00000140265	ZSCAN29	ZNF690|Zfp690	zinc finger and SCAN domain containing 29	protein-coding
125518	chr2	12731171	12731730	+	0	NA	intron (NM_021643, intron 2 of 2)	intron (NM_021643, intron 2 of 2)	-5917	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
14158	chr1	121221671	121222100	+	0	NA	intron (NM_001271872, intron 2 of 9)	intron (NM_001271872, intron 2 of 9)	36910	NM_001271872	653464		NM_001271872	ENSG00000171943	SRGAP2C	SRGAP2P1	SLIT-ROBO Rho GTPase activating protein 2C	protein-coding
172636	chr4	2538451	2538800	+	0	NA	intron (NM_001366318, intron 1 of 20)	intron (NM_001366318, intron 1 of 20)	1978	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
167619	chr3	129581851	129581950	+	0	NA	intron (NM_015103, intron 8 of 35)	L2b|LINE|L2	24776	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
218964	chr8	61468771	61468980	+	0	NA	intron (NM_173519, intron 5 of 5)	intron (NM_173519, intron 5 of 5)	180905	NM_173519	157807		NM_173519	ENSG00000177182	CLVS1	C6orf212L|CRALBPL|RLBP1L1	clavesin 1	protein-coding
20809	chr1	201210251	201210680	+	0	NA	exon (NM_001164586, exon 12 of 24)	exon (NM_001164586, exon 12 of 24)	19641	NM_001367841	91156		NM_178275	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin like and fibronectin type III domain containing 1	protein-coding
97400	chr17	43375721	43376130	+	0	NA	TTS (NR_027413)	TTS (NR_027413)	12973	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
24270	chr1	236415771	236416900	+	0	NA	intron (NM_080738, intron 3 of 5)	intron (NM_080738, intron 3 of 5)	20922	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
143896	chr20	32578221	32578530	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	6958	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
120956	chr19	45698421	45699150	+	0	NA	intron (NM_017659, intron 4 of 6)	intron (NM_017659, intron 4 of 6)	6119	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
214492	chr7	150428801	150429000	+	0	NA	Intergenic	Intergenic	-4754	NR_034033	285972		NR_034033	ENSG00000242258	LINC00996	-	long intergenic non-protein coding RNA 996	ncRNA
97168	chr17	42639651	42640030	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-19444	NM_001320509	27175		NM_016437	ENSG00000037042	TUBG2	-	tubulin gamma 2	protein-coding
6524	chr1	28555671	28556430	+	0	NA	intron (NM_017846, intron 2 of 8)	AluY|SINE|Alu	2965	NM_017846	54952		NM_017846	ENSG00000180098	TRNAU1AP	PRO1902|SECP43|TRSPAP1	tRNA selenocysteine 1 associated protein 1	protein-coding
173423	chr4	8200321	8200850	+	0	NA	intron (NM_001318480, intron 1 of 17)	intron (NM_001318480, intron 1 of 17)	1295	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
11511	chr1	90953471	90953900	+	0	NA	intron (NM_201269, intron 2 of 5)	AluSx1|SINE|Alu	67823	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
15519	chr1	150507851	150508600	+	0	NA	TTS (NM_001271895)	TTS (NM_001271895)	116	NM_004425	1893		NM_004425	ENSG00000143369	ECM1	URBWD	extracellular matrix protein 1	protein-coding
44795	chr11	113365851	113366350	+	0	NA	intron (NR_165393, intron 15 of 16)	intron (NR_165393, intron 15 of 16)	-21679	NM_178510	255239		NM_178510	ENSG00000170209	ANKK1	PKK2|sgK288	ankyrin repeat and kinase domain containing 1	protein-coding
62775	chr13	108342601	108343730	+	0	NA	Intergenic	Intergenic	73447	NM_006573	10673		NM_006573	ENSG00000102524	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4	TNF superfamily member 13b	protein-coding
160300	chr3	27455651	27455750	+	0	NA	intron (NR_135544, intron 1 of 24)	AluSz|SINE|Alu	1078	NM_003615	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
57494	chr12	122091071	122091630	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	12594	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
213514	chr7	139070421	139070980	+	0	NA	intron (NM_020119, intron 7 of 12)	AluSq2|SINE|Alu	-26543	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
56558	chr12	117042371	117042530	+	0	NA	intron (NR_031766, intron 6 of 7)	intron (NR_031766, intron 6 of 7)	-55113	NR_103809	100506551		NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA
234934	chrX	38325701	38325900	+	0	NA	non-coding (NR_159808, exon 2 of 18)	non-coding (NR_159808, exon 2 of 18)	1152	NR_159808	6103		NM_000328	ENSG00000156313	RPGR	COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15	retinitis pigmentosa GTPase regulator	protein-coding
59576	chr13	27441901	27442980	+	0	NA	intron (NM_001166263, intron 2 of 5)	L2a|LINE|L2	7749	NM_001166262	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
60909	chr13	46172151	46172980	+	0	NA	intron (NM_002298, intron 1 of 15)	L2c|LINE|L2	9612	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
62614	chr13	100581351	100581780	+	0	NA	intron (NM_001195087, intron 2 of 2)	L1MC3|LINE|L1	7227	NM_001195087	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
104232	chr17	80699551	80699850	+	0	NA	intron (NM_020761, intron 3 of 33)	intron (NM_020761, intron 3 of 33)	105932	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
151526	chr21	46457751	46459780	+	0	NA	promoter-TSS (NM_001146115)	promoter-TSS (NM_001146115)	-126	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
47022	chr12	383201	383400	+	0	NA	intron (NM_001042603, intron 3 of 27)	AluJb|SINE|Alu	6020	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
164698	chr3	67661521	67661780	+	0	NA	intron (NR_109992, intron 1 of 6)	AluJr|SINE|Alu	6953	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
44760	chr11	112113221	112114080	+	0	NA	Intergenic	Intergenic	26777	NM_001276503	6392		NM_003002	ENSG00000204370	SDHD	CBT1|CII-4|CWS3|MC2DN3|PGL|PGL1|PPGL1|QPs3|SDH4|cybS	succinate dehydrogenase complex subunit D	protein-coding
98467	chr17	47132951	47133050	+	0	NA	intron (NR_148340, intron 12 of 16)	(AT)n|Simple_repeat|Simple_repeat	56295	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
143868	chr20	32545451	32545780	+	0	NA	intron (NM_001256798, intron 1 of 10)	L2|LINE|L2	35656	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
124360	chr19	58352301	58352750	+	0	NA	exon (NM_130786, exon 4 of 8)	exon (NM_130786, exon 4 of 8)	555	NR_015380	503538		NR_015380	ENSG00000268895	A1BG-AS1	A1BG-AS|A1BGAS|NCRNA00181	A1BG antisense RNA 1	ncRNA
83872	chr16	28926771	28927780	+	0	NA	Intergenic	AluJb|SINE|Alu	-2037	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
207859	chr7	50359921	50361000	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	41412	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
14396	chr1	144246601	144246800	+	0	NA	intron (NR_027356, intron 1 of 2).2	intron (NR_027356, intron 1 of 2).2	1505	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
137857	chr2	200821721	200821980	+	0	NA	intron (NM_001207068, intron 11 of 11)	AluSx1|SINE|Alu	9464	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
172114	chr4	1163021	1163280	+	0	NA	Intergenic	AluY|SINE|Alu	9433	NM_012445	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
150623	chr21	43381071	43381600	+	0	NA	Intergenic	Intergenic	-18986	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
30187	chr10	74391801	74392000	+	0	NA	intron (NM_001369123, intron 4 of 9)	L1MD3|LINE|L1	137424	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
40119	chr11	62823021	62823350	+	0	NA	intron (NM_001244666, intron 10 of 10)	AluJb|SINE|Alu	8866	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
103752	chr17	78921671	78921830	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	3637	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
90444	chr17	1367701	1367900	+	0	NA	intron (NM_006761, intron 1 of 5)	L1ME1|LINE|L1	32422	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
171161	chr3	195630401	195630950	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	21484	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
26177	chr10	14530501	14530900	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	2014	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
61416	chr13	51806571	51807200	+	0	NA	Intergenic	Intergenic	-2722	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
23913	chr1	235013471	235014230	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-49851	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
177083	chr4	108059351	108059650	+	0	NA	intron (NM_001130714, intron 9 of 9)	AluJr|SINE|Alu	54836	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
82897	chr16	21626601	21627230	+	0	NA	intron (NM_001288660, intron 4 of 4)	intron (NM_001288660, intron 4 of 4)	25693	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
64009	chr14	22497921	22498330	+	0	NA	Intergenic	Intergenic	-15166	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
150724	chr21	43740631	43742230	+	0	NA	promoter-TSS (NM_001331030)	promoter-TSS (NM_001331030)	-56	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
217470	chr8	28793421	28793680	+	0	NA	intron (NR_026826, intron 8 of 14)	intron (NR_026826, intron 8 of 14)	92049	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
116340	chr19	17850351	17851050	+	0	NA	Intergenic	Intergenic	-2718	NM_000215	3718		NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
116875	chr19	18658701	18658900	+	0	NA	intron (NM_001345983, intron 1 of 2)	intron (NM_001345983, intron 1 of 2)	14162	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
233203	chr9	137218021	137218500	+	0	NA	3' UTR (NM_001144027, exon 13 of 13)	3' UTR (NM_001144027, exon 13 of 13)	3063	NM_031297	727800		NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
141849	chr20	543171	544730	+	0	NA	promoter-TSS (NM_001895)	promoter-TSS (NM_001895)	-160	NM_177560	1457		NM_001895	ENSG00000101266	CSNK2A1	CK2A1|CKII|Cka1|Cka2|OCNDS	casein kinase 2 alpha 1	protein-coding
71164	chr14	105032001	105032850	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-11342	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
25594	chr10	8050151	8050250	+	0	NA	TTS (NR_024256)	TTS (NR_024256)	2291	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
189112	chr5	170338471	170339500	+	0	NA	Intergenic	Intergenic	7592	NR_108024	257358		NM_001025454	ENSG00000235172	LINC01366	-	long intergenic non-protein coding RNA 1366	ncRNA
37556	chr11	18720551	18721700	+	0	NA	intron (NR_160413, intron 4 of 20)	intron (NR_160413, intron 4 of 20)	5063	NM_173588	283284		NM_173588	ENSG00000179057	IGSF22	IGFN2	immunoglobulin superfamily member 22	protein-coding
534	chr1	1229651	1230030	+	0	NA	intron (NM_016547, intron 1 of 6)	intron (NM_016547, intron 1 of 6)	2161	NM_016176	51150		NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
33754	chr10	122462271	122462430	+	0	NA	intron (NM_002775, intron 1 of 8)	CpG	797	NM_002775	5654		NM_002775	ENSG00000166033	HTRA1	ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11	HtrA serine peptidase 1	protein-coding
84587	chr16	30651301	30652350	+	0	NA	exon (NM_001320464, exon 3 of 12)	exon (NM_001320464, exon 3 of 12)	865	NM_024031	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
39949	chr11	62554901	62556100	+	0	NA	Intergenic	Intergenic	4806	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
238429	chrX	150880651	150880950	+	0	NA	intron (NM_134445, intron 1 of 7)	intron (NM_134445, intron 1 of 7)	17868	NM_031462	83692		NM_031462	ENSG00000102181	CD99L2	CD99B|MIC2L1	CD99 molecule like 2	protein-coding
214985	chr7	152132851	152133150	+	0	NA	Intergenic	Intergenic	57963	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
108427	chr18	69954471	69954650	+	0	NA	intron (NM_006566, intron 1 of 6)	intron (NM_006566, intron 1 of 6)	2239	NM_001303619	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
204802	chr7	5643221	5644050	+	0	NA	intron (NM_207111, intron 14 of 16)	intron (NM_207111, intron 14 of 16)	36826	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
32995	chr10	110535671	110536580	+	0	NA	Intergenic	Intergenic	-31570	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
156362	chr22	40965151	40965250	+	0	NA	intron (NM_014248, intron 3 of 4)	AluY|SINE|Alu	13822	NM_014248	9978		NM_014248	ENSG00000100387	RBX1	BA554C12.1|RNF75|ROC1	ring-box 1	protein-coding
194033	chr6	31837501	31838150	+	0	NA	TTS (NR_002742)	TTS (NR_002742)	749	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
126434	chr2	27897701	27898030	+	0	NA	intron (NM_199193, intron 3 of 13)	intron (NM_199193, intron 3 of 13)	-6751	NR_028308	100302650		NR_028308		BABAM2-AS1	BRE-AS1	BABAM2 antisense RNA 1	ncRNA
195435	chr6	36960521	36960900	+	0	NA	intron (NM_153370, intron 2 of 6)	intron (NM_153370, intron 2 of 6)	5972	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
211055	chr7	102460771	102461330	+	0	NA	intron (NM_017621, intron 1 of 2)	intron (NM_017621, intron 1 of 2)	3813	NM_017621	54784		NM_017621	ENSG00000160993	ALKBH4	ABH4	alkB homolog 4, lysine demethylase	protein-coding
124736	chr2	6863801	6864180	+	0	NA	intron (NR_046236, intron 1 of 4)	intron (NR_046236, intron 1 of 4)	1829	NM_001256477	129607		NM_207315	ENSG00000134326	CMPK2	NDK|TMPK2|TYKi|UMP-CMPK2	cytidine/uridine monophosphate kinase 2	protein-coding
33274	chr10	114525271	114526100	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	1228	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
2515	chr1	9703771	9704130	+	0	NA	intron (NM_001350234, intron 2 of 23)	L1ME3A|LINE|L1	12483	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
32960	chr10	110454421	110454680	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-43357	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
218132	chr8	41583321	41584100	+	0	NA	intron (NM_001363197, intron 1 of 12)	intron (NM_001363197, intron 1 of 12)	5194	NM_001363197	137964		NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
93904	chr17	21252801	21254300	+	0	NA	promoter-TSS (NM_152914)	promoter-TSS (NM_152914)	-140	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
130302	chr2	84923901	84924180	+	0	NA	Intergenic	AluSx|SINE|Alu	18384	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
123256	chr19	53336151	53336450	+	0	NA	intron (NM_138374, intron 1 of 3)	AluSx|SINE|Alu	2551	NM_138374	91664		NM_138374	ENSG00000213799	ZNF845	-	zinc finger protein 845	protein-coding
175970	chr4	81471301	81473350	+	0	NA	promoter-TSS (NM_001300735)	promoter-TSS (NM_001300735)	-418	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
221335	chr8	123139171	123139930	+	0	NA	intron (NM_145647, intron 17 of 21)	L1MB8|LINE|L1	-39497	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
26379	chr10	16809101	16809530	+	0	NA	intron (NM_152724, intron 1 of 7)	intron (NM_152724, intron 1 of 7)	8109	NM_012425	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
162806	chr3	49110621	49111280	+	0	NA	exon (NM_001199161, exon 23 of 27)	exon (NM_001199161, exon 23 of 27)	-6193	NM_001272073	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
88572	chr16	85560321	85561750	+	0	NA	Intergenic	AluJb|SINE|Alu	-50374	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
136245	chr2	174611471	174612050	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-13529	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
96720	chr17	41649851	41650150	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9801	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
190468	chr5	180089351	180089450	+	0	NA	Intergenic	AluSx|SINE|Alu	-17641	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
6874	chr1	31295051	31295350	+	0	NA	intron (NM_004814, intron 1 of 9)	AluJb|SINE|Alu	1588	NM_004814	9410		NM_004814	ENSG00000060688	SNRNP40	40K|HPRP8BP|PRP8BP|PRPF8BP|SPF38|WDR57	small nuclear ribonucleoprotein U5 subunit 40	protein-coding
40317	chr11	63894651	63894850	+	0	NA	intron (NM_017490, intron 1 of 17)	intron (NM_017490, intron 1 of 17)	6213	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
29027	chr10	63872351	63872600	+	0	NA	Intergenic	Intergenic	-350585	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
30389	chr10	78088671	78088830	+	0	NA	Intergenic	L1PA2|LINE|L1	54887	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
55885	chr12	109713301	109714950	+	0	NA	5' UTR (NM_032829, exon 1 of 3)	5' UTR (NM_032829, exon 1 of 3)	300	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
16052	chr1	152906201	152906400	+	0	NA	Intergenic	Intergenic	-2245	NM_005547	3713		NM_005547	ENSG00000163207	IVL	-	involucrin	protein-coding
62255	chr13	98559101	98559330	+	0	NA	intron (NM_001286649, intron 1 of 9)	THE1B|LTR|ERVL-MaLR	17892	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
133833	chr2	128026271	128027700	+	0	NA	intron (NM_001330301, intron 1 of 20)	CpG	310	NM_001145928	79595		NM_024545	ENSG00000136715	SAP130	-	Sin3A associated protein 130	protein-coding
63449	chr13	114118701	114118930	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	13808	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
46696	chr11	128772501	128773500	+	0	NA	intron (NM_001167681, intron 5 of 9)	intron (NM_001167681, intron 5 of 9)	69469	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
137351	chr2	196151071	196151500	+	0	NA	intron (NM_004226, intron 3 of 7)	AluYf1|SINE|Alu	20293	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
87928	chr16	79283651	79284230	+	0	NA	Intergenic	Intergenic	316797	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
210328	chr7	99495301	99495900	+	0	NA	intron (NM_001345967, intron 1 of 1)	AluSg4|SINE|Alu	4681	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
178209	chr4	142558651	142559150	+	0	NA	intron (NM_003866, intron 2 of 26)	MLT1J2|LTR|ERVL-MaLR	1855	NM_001385338	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
16544	chr1	154958351	154958530	+	0	NA	3' UTR (NM_138300, exon 3 of 3)	3' UTR (NM_138300, exon 3 of 3)	-2341	NM_001317735	57326		NM_020524	ENSG00000163346	PBXIP1	HPIP	PBX homeobox interacting protein 1	protein-coding
129925	chr2	73385201	73387100	+	0	NA	exon (NM_001378454, exon 1 of 23)	exon (NM_001378454, exon 1 of 23)	314	NM_001378454	7840		NM_015120	ENSG00000116127	ALMS1	ALSS	ALMS1 centrosome and basal body associated protein	protein-coding
19114	chr1	171499521	171499780	+	0	NA	intron (NM_015172, intron 1 of 33)	AluSx1|SINE|Alu	14120	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
227583	chr9	92351751	92351850	+	0	NA	intron (NM_001286969, intron 3 of 6)	AluSx1|SINE|Alu	25847	NM_001012267	401541		NM_001012267	ENSG00000188312	CENPP	CENP-P	centromere protein P	protein-coding
231556	chr9	131484071	131485200	+	0	NA	intron (NM_013318, intron 23 of 31)	intron (NM_013318, intron 23 of 31)	-1030	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
190496	chr5	180355801	180356000	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-2564	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
128235	chr2	54421871	54422880	+	0	NA	Intergenic	LTR12|LTR|ERV1	-33952	NM_003128	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
192510	chr6	25011071	25011230	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	31138	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
137678	chr2	197464771	197465000	+	0	NA	intron (NM_001320818, intron 2 of 3)	AluY|SINE|Alu	11121	NM_001320819	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
141876	chr20	738701	739230	+	0	NA	Intergenic	MIR|SINE|MIR	29535	NM_033409	113278		NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
54144	chr12	76550001	76550300	+	0	NA	intron (NM_001319652, intron 1 of 25)	intron (NM_001319652, intron 1 of 25)	9621	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
205626	chr7	22511321	22511650	+	0	NA	Intergenic	Intergenic	-11203	NM_207342	256227		NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
105120	chr17	82217651	82218830	+	0	NA	Intergenic	L2|LINE|L2	-5398	NM_001367828	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
45431	chr11	118406921	118407180	+	0	NA	exon (NM_006476, exon 2 of 3)	exon (NM_006476, exon 2 of 3)	5444	NM_006476	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
230653	chr9	128698401	128698600	+	0	NA	Intergenic	Intergenic	-4003	NM_013355	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
41439	chr11	66077201	66077880	+	0	NA	intron (NM_018026, intron 1 of 23)	AluJb|SINE|Alu	7268	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
201443	chr6	147508271	147509000	+	0	NA	promoter-TSS (NM_001030060)	promoter-TSS (NM_001030060)	-55	NM_001030060	389432		NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding
103880	chr17	79784121	79784930	+	0	NA	exon (NM_005189, exon 5 of 5)	exon (NM_005189, exon 5 of 5)	6347	NM_032647	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
24750	chr1	248804971	248805330	+	0	NA	Intergenic	Intergenic	20216	NM_001322463	80851		NM_030645	ENSG00000175137	SH3BP5L	-	SH3 binding domain protein 5 like	protein-coding
124113	chr19	55661151	55662130	+	0	NA	intron (NM_007279, intron 5 of 11)	intron (NM_007279, intron 5 of 11)	6605	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
9646	chr1	52603951	52604050	+	0	NA	intron (NM_015696, intron 1 of 2)	L2a|LINE|L2	1629	NM_015696	2882		NM_015696	ENSG00000116157	GPX7	CL683|GPX6|GPx-7|GSHPx-7|NPGPx	glutathione peroxidase 7	protein-coding
79292	chr16	541801	542000	+	0	NA	intron (NM_005632, intron 3 of 13)	intron (NM_005632, intron 3 of 13)	-1377	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
13608	chr1	116385951	116386280	+	0	NA	intron (NM_000701, intron 3 of 22)	AluSp|SINE|Alu	2745	NM_001160234	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
68513	chr14	88561321	88562080	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1337	NM_001326310	79882		NM_024824	ENSG00000100722	ZC3H14	MRT56|MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
138444	chr2	206088471	206088630	+	0	NA	Intergenic	Intergenic	-2376	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
119147	chr19	39383151	39383450	+	0	NA	non-coding (NR_169271, exon 13 of 13)	non-coding (NR_169271, exon 13 of 13)	7806	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
209478	chr7	76583201	76584130	+	0	NA	intron (NR_029411, intron 2 of 2)	intron (NR_029411, intron 2 of 2)	34324	NR_029411	100133091		NR_029411	ENSG00000290873	LINC03009	-	long intergenic non-protein coding RNA 3009	ncRNA
230903	chr9	129240221	129240480	+	0	NA	Intergenic	Intergenic	-42066	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
10926	chr1	84135101	84135550	+	0	NA	intron (NM_207578, intron 1 of 8)	L1MC3|LINE|L1	-8946	NM_182948	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
2817	chr1	11028021	11028280	+	0	NA	intron (NM_006610, intron 10 of 10)	AluSq|SINE|Alu	15496	NM_007375	23435		NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding
230754	chr9	128893951	128894050	+	0	NA	intron (NM_019594, intron 2 of 3)	AluSz|SINE|Alu	-11477	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
202916	chr6	160085621	160085880	+	0	NA	intron (NM_000876, intron 41 of 47)	intron (NM_000876, intron 41 of 47)	-7332	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
87364	chr16	70408301	70409330	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	30285	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
194339	chr6	32861171	32862100	+	0	NA	Intergenic	AluSq2|SINE|Alu	7443	NM_002800	5698		NM_002800	ENSG00000240065	PSMB9	LMP2|PRAAS3|PRAAS6|PSMB6i|RING12|beta1i	proteasome 20S subunit beta 9	protein-coding
226410	chr9	70422641	70423330	+	0	NA	Intergenic	L2a|LINE|L2	-8328	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
185050	chr5	115844121	115844580	+	0	NA	intron (NR_157087, intron 1 of 5)	L2a|LINE|L2	1863	NR_157087	1176		NM_001284	ENSG00000177879	AP3S1	CLAPS3|Sigma3A	adaptor related protein complex 3 subunit sigma 1	protein-coding
53990	chr12	75329851	75330550	+	0	NA	5' UTR (NM_032606, exon 1 of 18)	5' UTR (NM_032606, exon 1 of 18)	124	NM_001286547	84698		NM_032606	ENSG00000180881	CAPS2	UG0636c06	calcyphosine 2	protein-coding
162587	chr3	48682571	48683000	+	0	NA	intron (NM_184231, intron 2 of 12)	intron (NM_184231, intron 2 of 12)	3130	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
127815	chr2	44803171	44803330	+	0	NA	Intergenic	Intergenic	135638	NR_147194	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
85552	chr16	53374651	53375600	+	0	NA	intron (NR_119378, intron 1 of 2)	AluSp|SINE|Alu	1632	NR_119378	102723373		NR_119378		LOC102723373	-	uncharacterized LOC102723373	ncRNA
234162	chrX	11533071	11533450	+	0	NA	intron (NR_109776, intron 1 of 14)	intron (NR_109776, intron 1 of 14)	-105442	NM_001287242	395		NM_001174	ENSG00000047648	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
192767	chr6	26473661	26474940	+	0	NA	intron (NR_038992, intron 3 of 3)	MER57C2|LTR|ERV1	8209	NR_038992	285819		NR_038992		LOC285819	-	uncharacterized LOC285819	ncRNA
219997	chr8	89992601	89993050	+	0	NA	Intergenic	Intergenic	-8101	NM_001024688	4683		NM_002485	ENSG00000104320	NBN	AT-V1|AT-V2|ATV|NBS|NBS1|P95	nibrin	protein-coding
161135	chr3	38628001	38628230	+	0	NA	intron (NM_198056, intron 3 of 27)	intron (NM_198056, intron 3 of 27)	21572	NM_001354701	6331		NM_000335	ENSG00000183873	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	sodium voltage-gated channel alpha subunit 5	protein-coding
147453	chr20	59003601	59003950	+	0	NA	intron (NM_001336, intron 2 of 5)	intron (NM_001336, intron 2 of 5)	3479	NM_001336	1522		NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
139775	chr2	230219621	230220730	+	0	NA	promoter-TSS (NM_004510)	promoter-TSS (NM_004510)	-191	NM_004510	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
164283	chr3	57587971	57588330	+	0	NA	intron (NM_001660, intron 1 of 5)	intron (NM_001660, intron 1 of 5)	9194	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
7369	chr1	32830051	32830350	+	0	NA	intron (NM_001256121, intron 5 of 6)	intron (NM_001256121, intron 5 of 6)	4887	NR_135107	64766		NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding
47392	chr12	2794101	2795300	+	0	NA	promoter-TSS (NM_002014)	promoter-TSS (NM_002014)	-270	NM_002014	2288		NM_002014	ENSG00000004478	FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	FKBP prolyl isomerase 4	protein-coding
53965	chr12	73421901	73422100	+	0	NA	Intergenic	Intergenic	262810	NR_110130	101928137		NR_110130	ENSG00000258123	LINC02444	-	long intergenic non-protein coding RNA 2444	ncRNA
183318	chr5	76711051	76711850	+	0	NA	promoter-TSS (NR_028375)	promoter-TSS (NR_028375)	-953	NR_028375	100302746		NR_028375		NCRUPAR	NCRNA00193|ncR-uPAR	non-protein coding RNA, upstream of F2R/PAR1	ncRNA
60136	chr13	39616051	39616400	+	0	NA	Intergenic	Intergenic	-13032	NM_005780	10186		NM_005780	ENSG00000183722	LHFPL6	LHFP	LHFPL tetraspan subfamily member 6	protein-coding
79561	chr16	977271	978180	+	0	NA	intron (NR_164342, intron 2 of 3)	(GGAC)n|Simple_repeat|Simple_repeat	3888	NR_164339	115804232		NR_036442	ENSG00000260807	CEROX1	-	cytoplasmic endogenous regulator of oxidative phosphorylation 1	ncRNA
29199	chr10	68979701	68980100	+	0	NA	intron (NM_004728, intron 13 of 14)	intron (NM_004728, intron 13 of 14)	-8903	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
164912	chr3	71136901	71137300	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	-4903	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
168052	chr3	136934001	136934200	+	0	NA	intron (NM_001190796, intron 1 of 2)	MIR|SINE|MIR	3598	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
14026	chr1	120736501	120736700	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	12661	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
97679	chr17	44250601	44252250	+	0	NA	exon (NM_000342, exon 18 of 20)	exon (NM_000342, exon 18 of 20)	16710	NM_000342	6521		NM_000342	ENSG00000004939	SLC4A1	AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR	solute carrier family 4 member 1 (Diego blood group)	protein-coding
85044	chr16	31875921	31876580	+	0	NA	intron (NM_001265588, intron 2 of 4)	AluJb|SINE|Alu	2443	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
206025	chr7	26664721	26665330	+	0	NA	Intergenic	Intergenic	27154	NR_161201	285941		NR_161201	ENSG00000222004	LINC02860	C7orf71	long intergenic non-protein coding RNA 2860	ncRNA
190837	chr6	1605421	1605880	+	0	NA	non-coding (NR_125804, exon 1 of 2)	non-coding (NR_125804, exon 1 of 2)	119	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
74504	chr15	60328701	60329130	+	0	NA	Intergenic	Intergenic	69071	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
67806	chr14	73774001	73774280	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	13068	NM_001043318	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
107160	chr18	35340801	35341000	+	0	NA	intron (NM_001308123, intron 1 of 3)	MER58B|DNA|hAT-Charlie	3520	NM_001375815	7572		NM_006965	ENSG00000172466	ZNF24	KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191	zinc finger protein 24	protein-coding
9040	chr1	44791171	44791700	+	0	NA	Intergenic	Intergenic	-3265	NM_153274	266675		NM_153274	ENSG00000142959	BEST4	VMD2L2	bestrophin 4	protein-coding
204619	chr7	5371971	5372130	+	0	NA	intron (NM_001080495, intron 10 of 29)	AluSq2|SINE|Alu	51496	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
231752	chr9	132164321	132164830	+	0	NA	intron (NM_032536, intron 1 of 7)	CpG	2517	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
134617	chr2	144403971	144404330	+	0	NA	intron (NM_014795, intron 5 of 9)	(GA)n|Simple_repeat|Simple_repeat	-71081	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
110180	chr19	1667001	1667200	+	0	NA	Intergenic	AluY|SINE|Alu	-14485	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
207666	chr7	45088101	45088300	+	0	NA	intron (NM_001146334, intron 1 of 7)	intron (NM_001146334, intron 1 of 7)	769	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
112703	chr19	7098891	7100300	+	0	NA	Intergenic	CpG	29892	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
473	chr1	1153651	1154150	+	0	NA	Intergenic	Intergenic	-13204	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
30681	chr10	80511201	80512150	+	0	NA	intron (NM_001351269, intron 5 of 8)	intron (NM_001351269, intron 5 of 8)	24267	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
34355	chr10	132206821	132207080	+	0	NA	TTS (NM_001318879)	TTS (NM_001318879)	20002	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
210686	chr7	100565851	100565950	+	0	NA	3' UTR (NM_006076, exon 12 of 12)	3' UTR (NM_006076, exon 12 of 12)	8000	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
98294	chr17	46229151	46229250	+	0	NA	Intergenic	AluJo|SINE|Alu	-3833	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
211583	chr7	105758151	105758330	+	0	NA	intron (NM_001385596, intron 3 of 11)	intron (NM_001385596, intron 3 of 11)	-79078	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
208009	chr7	55553701	55554100	+	0	NA	promoter-TSS (NM_001321248)	promoter-TSS (NM_001321248)	-13	NM_001321248	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
138007	chr2	201265501	201266330	+	0	NA	intron (NM_033356, intron 1 of 7)	intron (NM_033356, intron 1 of 7)	5379	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
37625	chr11	20363521	20364900	+	0	NA	promoter-TSS (NM_001098523)	promoter-TSS (NM_001098523)	69	NM_001098523	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
163265	chr3	50297861	50298100	+	0	NA	intron (NM_001200016, intron 1 of 1)	intron (NM_001200016, intron 1 of 1)	880	NM_001200018	24142		NM_012191	ENSG00000243477	NAA80	FUS-2|FUS2|HsNAAA80|NAT6	N-alpha-acetyltransferase 80, NatH catalytic subunit	protein-coding
42500	chr11	70261701	70261900	+	0	NA	Intergenic	AluSx|SINE|Alu	-8890	NM_001378006	8500		NM_003626	ENSG00000131626	PPFIA1	LIP.1|LIP1|LIPRIN	PTPRF interacting protein alpha 1	protein-coding
139466	chr2	223951071	223951230	+	0	NA	Intergenic	L2a|LINE|L2	-5815	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
57267	chr12	121611251	121611730	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	14961	NR_049838	100847078		NR_049838	ENSG00000265470	MIR548AQ	-	microRNA 548aq	ncRNA
177632	chr4	121192271	121193100	+	0	NA	intron (NM_001128843, intron 2 of 12)	intron (NM_001128843, intron 2 of 12)	23942	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
178424	chr4	147785251	147785650	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	2855	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
172755	chr4	2850821	2851780	+	0	NA	intron (NM_001286645, intron 1 of 17)	MIR|SINE|MIR	7150	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
218513	chr8	52965721	52966100	+	0	NA	Intergenic	Intergenic	26728	NM_005285	2831		NM_005285	ENSG00000288611	NPBWR1	GPR7	neuropeptides B and W receptor 1	protein-coding
220157	chr8	95017151	95017250	+	0	NA	intron (NM_001354524, intron 3 of 11)	AluJb|SINE|Alu	-7775	NM_001354518	137682		NM_152416	ENSG00000156170	NDUFAF6	C8orf38|FRTS5|MC1DN17	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein-coding
170931	chr3	194306071	194307050	+	0	NA	intron (NR_024480, intron 1 of 2)	intron (NR_024480, intron 1 of 2)	6244	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
792	chr1	1541421	1541800	+	0	NA	promoter-TSS (NM_001114748)	promoter-TSS (NM_001114748)	-986	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
238204	chrX	137314601	137314800	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-251427	NM_003413	7547		NM_003413	ENSG00000156925	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
175858	chr4	79514421	79514500	+	0	NA	intron (NR_038826, intron 3 of 3)	intron (NR_038826, intron 3 of 3)	21867	NR_038826	100506035		NR_038826	ENSG00000250334	LINC00989	-	long intergenic non-protein coding RNA 989	ncRNA
232060	chr9	133470921	133471380	+	0	NA	TTS (NM_001145099).2	TTS (NM_001145099).2	7949	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
85756	chr16	56839121	56839380	+	0	NA	intron (NM_014669, intron 19 of 21)	(T)n|Simple_repeat|Simple_repeat	-19268	NR_029680	406930		NR_029680	ENSG00000207649	MIR138-2	MIRN138-2|mir-138-2	microRNA 138-2	ncRNA
101203	chr17	65531651	65532150	+	0	NA	intron (NM_004655, intron 10 of 10)	intron (NM_004655, intron 10 of 10)	29748	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
113362	chr19	8708421	8708680	+	0	NA	Intergenic	L1PA5|LINE|L1	-9755	NM_178525	284382		NM_178525	ENSG00000181786	ACTL9	HSD21|SPGF53	actin like 9	protein-coding
143847	chr20	32526851	32527580	+	0	NA	intron (NM_001256798, intron 2 of 10)	intron (NM_001256798, intron 2 of 10)	17256	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
17595	chr1	156867221	156867480	+	0	NA	intron (NM_002529, intron 4 of 16)	intron (NM_002529, intron 4 of 16)	6471	NM_002529	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
82698	chr16	20741021	20742530	+	0	NA	promoter-TSS (NM_017736)	promoter-TSS (NM_017736)	43	NM_017736	55623		NM_017736	ENSG00000066654	THUMPD1	NEDSOA|Tan1	THUMP domain containing 1	protein-coding
108652	chr18	76686871	76687550	+	0	NA	Intergenic	Intergenic	-2819	NR_122073	400661		NR_122073	ENSG00000276397	LINC01879	-	long intergenic non-protein coding RNA 1879	ncRNA
122651	chr19	49854401	49855230	+	0	NA	TTS (NR_039904)	TTS (NR_039904)	224	NR_039904	100616313		NR_039904	ENSG00000265954	MIR4749	mir-4749	microRNA 4749	ncRNA
112604	chr19	6734271	6734850	+	0	NA	intron (NM_020171, intron 4 of 17)	AluJr|SINE|Alu	2218	NR_106849	102465474		NR_106849	ENSG00000283950	MIR6791	hsa-mir-6791	microRNA 6791	ncRNA
5156	chr1	24917851	24918480	+	0	NA	intron (NM_001031680, intron 4 of 5)	intron (NM_001031680, intron 4 of 5)	1251	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
151895	chr22	18897571	18897930	+	0	NA	Intergenic	L1PA16|LINE|L1	-3319	NR_136571	100996432		NR_136571		FAM230F	LINC01663	family with sequence similarity 230 member F	ncRNA
83362	chr16	25093271	25094130	+	0	NA	Intergenic	Intergenic	17855	NR_120306	102723510		NR_120306		LCMT1-AS1	-	LCMT1 antisense RNA 1	ncRNA
111815	chr19	4492651	4492950	+	0	NA	intron (NM_032631, intron 6 of 15)	(GT)n|Simple_repeat|Simple_repeat	18846	NM_001348169	84717		NM_032631	ENSG00000167674	HDGFL2	HDGF-2|HDGF2|HDGFRP2|HRP-2|HRP2	HDGF like 2	protein-coding
185834	chr5	132463901	132464800	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	26423	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
186366	chr5	134881351	134881830	+	0	NA	intron (NM_024715, intron 1 of 4)	SVA_D|Retroposon|SVA	7219	NM_024715	79770		NM_024715	ENSG00000113621	TXNDC15	BUG|C5orf14|MKS14|UNQ335	thioredoxin domain containing 15	protein-coding
197989	chr6	90064201	90064400	+	0	NA	intron (NM_021813, intron 5 of 8)	L2c|LINE|L2	169831	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
17560	chr1	156810501	156810700	+	0	NA	intron (NM_001161444, intron 5 of 7)	AluSx1|SINE|Alu	-5150	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
105218	chr17	82336521	82336980	+	0	NA	Intergenic	Intergenic	-2984	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
27337	chr10	30600151	30600250	+	0	NA	Intergenic	L1PB3|LINE|L1	29553	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
43394	chr11	77097301	77097500	+	0	NA	intron (NM_004055, intron 3 of 12)	intron (NM_004055, intron 3 of 12)	-5440	NM_006189	4975		NM_006189	ENSG00000254550	OMP	-	olfactory marker protein	protein-coding
94550	chr17	29592901	29593830	+	0	NA	5' UTR (NM_152345, exon 1 of 15)	5' UTR (NM_152345, exon 1 of 15)	233	NM_152345	124930		NM_152345	ENSG00000198720	ANKRD13B	-	ankyrin repeat domain 13B	protein-coding
118885	chr19	38681001	38681880	+	0	NA	intron (NM_004924, intron 1 of 20)	L2c|LINE|L2	33791	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
112954	chr19	7788401	7788930	+	0	NA	intron (NR_002931, intron 3 of 6)	CpG-13567	1181	NR_002931	440508		NR_002931		CLEC4GP1	-	C-type lectin domain family 4 member G pseudogene 1	pseudo
122901	chr19	50556021	50557000	+	0	NA	intron (NM_001080457, intron 1 of 2)	intron (NM_001080457, intron 1 of 2)	-5468	NM_001348568	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
108902	chr18	79427371	79428230	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	27501	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
134789	chr2	147843271	147845080	+	0	NA	promoter-TSS (NM_001616)	promoter-TSS (NM_001616)	-342	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
26671	chr10	22617251	22617850	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	96558	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
62038	chr13	88920021	88920300	+	0	NA	Intergenic	Intergenic	293307	NR_047490	100861553		NR_047490	ENSG00000261666	LINC00560	-	long intergenic non-protein coding RNA 560	ncRNA
204787	chr7	5618821	5619080	+	0	NA	Intergenic	Intergenic	26134	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
143525	chr20	31556771	31556930	+	0	NA	intron (NM_178580, intron 8 of 12)	AluYm1|SINE|Alu	16413	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
223490	chr8	144061851	144062330	+	0	NA	Intergenic	MER41A|LTR|ERV1	-1398	NM_017570	26873		NM_017570	ENSG00000178814	OPLAH	5-Opase|OPLA|OPLAHD	5-oxoprolinase, ATP-hydrolysing	protein-coding
106708	chr18	23454671	23455200	+	0	NA	intron (NR_145477, intron 1 of 12)	intron (NR_145477, intron 1 of 12)	1648	NR_145477	8780		NM_003831	ENSG00000101782	RIOK3	SUDD	RIO kinase 3	protein-coding
90483	chr17	1396451	1396550	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	3722	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
38163	chr11	36265971	36266500	+	0	NA	Intergenic	Intergenic	23189	NM_001307932	29099		NM_014186	ENSG00000110442	COMMD9	C11orf55|HSPC166|LINC00610	COMM domain containing 9	protein-coding
26520	chr10	21430371	21430550	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-57510	NR_155751	105376444		NR_155751	ENSG00000230109	LINC02643	-	long intergenic non-protein coding RNA 2643	ncRNA
5365	chr1	25362701	25364250	+	0	NA	intron (NM_138618, intron 8 of 8)	MIRb|SINE|MIR	25141	NM_014313	23585		NM_014313	ENSG00000183726	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
219979	chr8	89805221	89805480	+	0	NA	Intergenic	MER41A|LTR|ERV1	47534	NM_003821	8767		NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor interacting serine/threonine kinase 2	protein-coding
176225	chr4	84583851	84583950	+	0	NA	intron (NM_001263, intron 1 of 12)	intron (NM_001263, intron 1 of 12)	773	NM_001263	1040		NM_001263	ENSG00000163624	CDS1	CDS 1	CDP-diacylglycerol synthase 1	protein-coding
88776	chr16	87236151	87236480	+	0	NA	Intergenic	Intergenic	24200	NR_110939	101928708		NR_110939	ENSG00000261095	LOC101928708	-	uncharacterized LOC101928708	ncRNA
217335	chr8	27588251	27588450	+	0	NA	Intergenic	Intergenic	22401	NR_106902	102465508		NR_106902	ENSG00000284280	MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
97902	chr17	45123851	45124750	+	0	NA	intron (NM_133373, intron 1 of 14)	intron (NM_133373, intron 1 of 14)	8215	NM_133373	113026		NM_133373	ENSG00000161714	PLCD3	PLC-delta-3	phospholipase C delta 3	protein-coding
186398	chr5	135332571	135332730	+	0	NA	intron (NR_161235, intron 3 of 5)	intron (NR_161235, intron 3 of 5)	66581	NM_138610	9555		NM_004893	ENSG00000113648	MACROH2A1	H2A.y|H2A/y|H2AF12M|H2AFY|MACROH2A1.1|mH2A1|macroH2A1.2	macroH2A.1 histone	protein-coding
124532	chr2	246521	246800	+	0	NA	intron (NR_104226, intron 5 of 10)	intron (NR_104226, intron 5 of 10)	9680	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
209795	chr7	87797571	87798050	+	0	NA	intron (NM_001134406, intron 8 of 9)	intron (NM_001134406, intron 8 of 9)	78550	NM_018843	55972		NM_018843	ENSG00000075303	SLC25A40	MCFP	solute carrier family 25 member 40	protein-coding
96637	chr17	40600801	40601000	+	0	NA	Intergenic	L2c|LINE|L2	-35428	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
18507	chr1	161764851	161765570	+	0	NA	Intergenic	Intergenic	-1110	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
141439	chr2	241010951	241011280	+	0	NA	intron (NM_001080437, intron 1 of 31)	intron (NM_001080437, intron 1 of 31)	12497	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
37272	chr11	14673421	14673950	+	0	NA	intron (NM_001363569, intron 1 of 15)	AmnSINE1|SINE|5S-Deu-L2	29881	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
227055	chr9	83978171	83978550	+	0	NA	intron (NM_031263, intron 2 of 16)	intron (NM_031263, intron 2 of 16)	1855	NM_031263	3190		NM_002140	ENSG00000165119	HNRNPK	AUKS|CSBP|HNRPK|TUNP	heterogeneous nuclear ribonucleoprotein K	protein-coding
223761	chr8	144524051	144524150	+	0	NA	3' UTR (NM_001272036, exon 5 of 5)	3' UTR (NM_001272036, exon 5 of 5)	2933	NM_001024678	441381		NM_001024678	ENSG00000254402	LRRC24	LRRC14OS	leucine rich repeat containing 24	protein-coding
91810	chr17	7045251	7046300	+	0	NA	Intergenic	Intergenic	-1683	NM_001370549	162515		NM_153357	ENSG00000174326	SLC16A11	MCT 11|MCT11	solute carrier family 16 member 11	protein-coding
73950	chr15	51732801	51733300	+	0	NA	intron (NM_001143917, intron 1 of 2)	L2a|LINE|L2	4012	NM_001363969	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
97371	chr17	43314901	43317010	+	0	NA	Intergenic	Intergenic	-15724	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
122378	chr19	49390421	49391150	+	0	NA	intron (NM_144688, intron 1 of 19)	intron (NM_144688, intron 1 of 19)	2536	NM_144688	147872		NM_144688	ENSG00000161609	KASH5	CCDC155|POF22|SPGF88	KASH domain containing 5	protein-coding
65204	chr14	49690401	49690600	+	0	NA	Intergenic	AluYg6|SINE|Alu	-2120	NM_001197330	5427		NM_002692	ENSG00000100479	POLE2	DPE2	DNA polymerase epsilon 2, accessory subunit	protein-coding
50511	chr12	47821221	47821800	+	0	NA	Intergenic	Intergenic	-1607	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
207698	chr7	45888701	45888900	+	0	NA	exon (NM_000596, exon 1 of 4)	exon (NM_000596, exon 1 of 4)	312	NM_000596	3484		NM_000596	ENSG00000146678	IGFBP1	AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1	insulin like growth factor binding protein 1	protein-coding
213963	chr7	142787671	142787830	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	16780	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
125740	chr2	20666561	20668200	+	0	NA	exon (NM_182828, exon 1 of 2)	exon (NM_182828, exon 1 of 2)	236	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
119072	chr19	39156321	39156580	+	0	NA	intron (NM_001014834, intron 1 of 7)	intron (NM_001014834, intron 1 of 7)	30664	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
54830	chr12	94939951	94940250	+	0	NA	Intergenic	Intergenic	63597	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
86340	chr16	66477301	66477830	+	0	NA	exon (NM_001178020, exon 4 of 5)	exon (NM_001178020, exon 4 of 5)	-1163	NR_109960	101927726		NR_109960	ENSG00000261656	BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
59252	chr13	23981221	23981500	+	0	NA	intron (NR_104595, intron 1 of 4)	intron (NR_104595, intron 1 of 4)	1558	NR_104595	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
155109	chr22	37611271	37611850	+	0	NA	intron (NM_001172688, intron 1 of 17)	L2a|LINE|L2	2520	NM_001172688	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
236405	chrX	71178901	71179280	+	0	NA	Intergenic	Intergenic	34249	NM_001321276	54413		NM_018977	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
46859	chr11	133930421	133931150	+	0	NA	intron (NM_001277285, intron 11 of 19)	intron (NM_001277285, intron 11 of 19)	26183	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
164859	chr3	71062201	71062400	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	2624	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
137800	chr2	199916851	199917150	+	0	NA	intron (NM_153689, intron 1 of 1)	THE1C-int|LTR|ERVL-MaLR	5707	NM_153689	205327		NM_153689	ENSG00000178074	C2orf69	COXPD53	chromosome 2 open reading frame 69	protein-coding
160357	chr3	27821351	27821600	+	0	NA	intron (NR_146630, intron 2 of 4)	L1PA7|LINE|L1	12661	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
27906	chr10	41891921	41892800	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	475685	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
59434	chr13	25829851	25830030	+	0	NA	intron (NM_016529, intron 28 of 36)	MER5A|DNA|hAT-Charlie	222076	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
131031	chr2	88159821	88160350	+	0	NA	Intergenic	Intergenic	-10210	NM_001244678	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
58200	chr12	126762301	126762500	+	0	NA	intron (NR_033878, intron 1 of 4)	LTR26|LTR|ERV1	9862	NR_033878	387895		NR_033878		LINC00944	DMDRMR	long intergenic non-protein coding RNA 944	ncRNA
31019	chr10	88823821	88824300	+	0	NA	intron (NM_144590, intron 4 of 5)	intron (NM_144590, intron 4 of 5)	21330	NM_001128215	340654		NM_001128215	ENSG00000173239	LIPM	LIPL3|bA304I5.1	lipase family member M	protein-coding
41087	chr11	65521571	65522380	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-3108	NM_001048218	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
35011	chr11	544551	544650	+	0	NA	intron (NM_198075, intron 5 of 13)	intron (NM_198075, intron 5 of 13)	7073	NM_198075	115399		NM_198075	ENSG00000161328	LRRC56	CILD39|DNAAF12|oda8	leucine rich repeat containing 56	protein-coding
34406	chr10	132391801	132392850	+	0	NA	Intergenic	(GTGATG)n|Simple_repeat|Simple_repeat	-4875	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
197548	chr6	79075951	79076370	+	0	NA	intron (NM_017934, intron 4 of 39)	intron (NM_017934, intron 4 of 39)	2094	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
205388	chr7	15940651	15940850	+	0	NA	Intergenic	L1PA2|LINE|L1	252372	NR_110094	101927524		NR_110094	ENSG00000229108	LINC02587	MEOX2-AS1	long intergenic non-protein coding RNA 2587	ncRNA
131304	chr2	96112751	96112850	+	0	NA	TTS (NM_000682)	TTS (NM_000682)	3771	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
139498	chr2	224530851	224530950	+	0	NA	intron (NM_003590, intron 3 of 15)	AluSz6|SINE|Alu	39055	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
208303	chr7	66087271	66087630	+	0	NA	intron (NM_001024943, intron 8 of 15)	intron (NM_001024943, intron 8 of 15)	11631	NM_001024946	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
170759	chr3	188438751	188439880	+	0	NA	intron (NR_164692, intron 3 of 9)	intron (NR_164692, intron 3 of 9)	129351	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
235694	chrX	48736001	48736580	+	0	NA	Intergenic	Intergenic	-25457	NM_001080489	392465		NM_001080489	ENSG00000171433	GLOD5	-	glyoxalase domain containing 5	protein-coding
59772	chr13	30151301	30152100	+	0	NA	TTS (NR_138041)	TTS (NR_138041)	1374	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
114864	chr19	13865001	13866750	+	0	NA	intron (NR_146097, intron 1 of 1)	CpG	672	NR_146096	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
104098	chr17	80268921	80269180	+	0	NA	intron (NM_020954, intron 2 of 16)	MLT2B3|LTR|ERVL	8198	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
173231	chr4	6917551	6917990	+	0	NA	intron (NM_020773, intron 1 of 13)	intron (NM_020773, intron 1 of 13)	7944	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
107313	chr18	44911701	44911900	+	0	NA	intron (NM_001379141, intron 3 of 5)	L2c|LINE|L2	58366	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
174751	chr4	46993551	46994130	+	0	NA	promoter-TSS (NM_000809)	promoter-TSS (NM_000809)	-259	NM_000809	2557		NM_000809	ENSG00000109158	GABRA4	-	gamma-aminobutyric acid type A receptor subunit alpha4	protein-coding
159733	chr3	15805621	15806250	+	0	NA	intron (NM_015199, intron 1 of 27)	intron (NM_015199, intron 1 of 27)	-7751	NR_146111	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
147188	chr20	56629151	56629250	+	0	NA	promoter-TSS (NM_003222)	promoter-TSS (NM_003222)	-106	NM_003222	7022		NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma	protein-coding
156530	chr22	41420401	41421000	+	0	NA	Intergenic	AluYk3|SINE|Alu	26101	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
53492	chr12	66287371	66288730	+	0	NA	Intergenic	Intergenic	-14443	NM_001370285	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
231880	chr9	133003971	133004330	+	0	NA	Intergenic	Intergenic	-16280	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
133443	chr2	119476201	119476530	+	0	NA	promoter-TSS (NR_147847)	promoter-TSS (NR_147847)	-89	NR_147846	107105282		NR_147846	ENSG00000231013	SCTR-AS1	-	SCTR antisense RNA 1	ncRNA
61175	chr13	49125801	49126650	+	0	NA	intron (NM_001079673, intron 4 of 25)	intron (NM_001079673, intron 4 of 25)	15908	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
95794	chr17	38719621	38721050	+	0	NA	TTS (NR_039879)	TTS (NR_039879)	644	NR_039879	100616153		NR_039879	ENSG00000273627	MIR4726	-	microRNA 4726	ncRNA
151722	chr22	17748501	17748900	+	0	NA	intron (NM_197967, intron 1 of 4)	CpG	15559	NR_036168	100423025		NR_036168	ENSG00000264757	MIR3198-1	MIR3198|mir-3198-1	microRNA 3198-1	ncRNA
192748	chr6	26405851	26406980	+	0	NA	intron (NM_001145008, intron 3 of 9)	intron (NM_001145008, intron 3 of 9)	4140	NM_001145009	11119		NM_007048	ENSG00000026950	BTN3A1	BT3.1|BTF5|BTN3.1|CD277	butyrophilin subfamily 3 member A1	protein-coding
17829	chr1	159899971	159900400	+	0	NA	promoter-TSS (NR_130464)	promoter-TSS (NR_130464)	-20	NM_012337	25790		NM_012337	ENSG00000213085	CFAP45	CCDC19|HTX11|NESG1	cilia and flagella associated protein 45	protein-coding
146531	chr20	49946901	49947100	+	0	NA	intron (NM_018683, intron 4 of 5)	AluSx1|SINE|Alu	10603	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
87874	chr16	78045901	78046150	+	0	NA	Intergenic	CpG	23477	NM_005752	10143		NM_005752	ENSG00000166509	CLEC3A	CLECSF1	C-type lectin domain family 3 member A	protein-coding
237384	chrX	119470351	119471050	+	0	NA	intron (NM_001152, intron 3 of 3)	intron (NM_001152, intron 3 of 3)	-1580	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
160851	chr3	33095921	33097830	+	0	NA	promoter-TSS (NM_001079811)	promoter-TSS (NM_001079811)	-43	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
66969	chr14	65960851	65961280	+	0	NA	Intergenic	Intergenic	489963	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
238810	chrX	154405271	154405430	+	0	NA	intron (NM_001009932, intron 4 of 9)	intron (NM_001009932, intron 4 of 9)	3904	NM_001303620	1774		NM_006730	ENSG00000013563	DNASE1L1	DNAS1L1|DNASEX|DNL1L|G4.8|XIB	deoxyribonuclease 1 like 1	protein-coding
165938	chr3	107563071	107563380	+	0	NA	intron (NM_020235, intron 2 of 16)	intron (NM_020235, intron 2 of 16)	40263	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
8500	chr1	40856871	40857230	+	0	NA	Intergenic	Intergenic	5313	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
13807	chr1	117606701	117607200	+	0	NA	intron (NM_017709, intron 1 of 1)	CpG	902	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
103556	chr17	78671001	78671500	+	0	NA	Intergenic	Intergenic	-39193	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
16583	chr1	155014671	155014980	+	0	NA	exon (NM_001252406, exon 4 of 5)	exon (NM_001252406, exon 4 of 5)	12023	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
146816	chr20	51384771	51385150	+	0	NA	Intergenic	Intergenic	68017	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
43024	chr11	74001851	74002950	+	0	NA	TTS (NM_022803)	TTS (NM_022803)	6685	NM_003356	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
7454	chr1	33055021	33055830	+	0	NA	Intergenic	Intergenic	-18514	NM_001319143	204		NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
230115	chr9	127703471	127704030	+	0	NA	Intergenic	L1M4b|LINE|L1	-3238	NM_001012502	286207		NM_001012502	ENSG00000160401	CFAP157	C9orf117	cilia and flagella associated protein 157	protein-coding
33046	chr10	110855201	110856150	+	0	NA	Intergenic	Intergenic	15229	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
159634	chr3	15299121	15299380	+	0	NA	intron (NM_004844, intron 3 of 8)	intron (NM_004844, intron 3 of 8)	33336	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
119168	chr19	39404971	39405780	+	0	NA	Intergenic	AluSz|SINE|Alu	-1472	NM_003407	7538		NM_003407	ENSG00000128016	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding
195370	chr6	36684871	36685030	+	0	NA	intron (NM_001374511, intron 2 of 2)	AluJo|SINE|Alu	6236	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
5410	chr1	25532871	25533250	+	0	NA	Intergenic	L2a|LINE|L2	-10546	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
195845	chr6	41427651	41428500	+	0	NA	Intergenic	CpG	-74369	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
60225	chr13	40518351	40518800	+	0	NA	Intergenic	Intergenic	-37569	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
193106	chr6	28935971	28936130	+	0	NA	Intergenic	AluJb|SINE|Alu	-7734	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
235793	chrX	49170601	49170800	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1198	NM_002668	5355		NM_002668	ENSG00000102007	PLP2	A4|A4LSB	proteolipid protein 2	protein-coding
124905	chr2	8479321	8480300	+	0	NA	Intergenic	Intergenic	103982	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
126844	chr2	31333371	31333800	+	0	NA	TTS (NM_000379)	TTS (NM_000379)	81157	NM_000379	7498		NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
80613	chr16	2963901	2964500	+	0	NA	promoter-TSS (NM_024507)	promoter-TSS (NM_024507)	-75	NM_001253726	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
72764	chr15	39715751	39715850	+	0	NA	intron (NM_001324338, intron 9 of 11)	MSTA|LTR|ERVL-MaLR	67041	NM_001324338	161835		NM_152597	ENSG00000150667	FSIP1	HSD10	fibrous sheath interacting protein 1	protein-coding
160965	chr3	36994751	36995650	+	0	NA	intron (NM_001354619, intron 2 of 19)	AluYi6|SINE|Alu	1682	NM_000249	4292		NM_000249	ENSG00000076242	MLH1	COCA2|FCC2|HNPCC|HNPCC2|LYNCH2|MLH-1|MMRCS1|hMLH1	mutL homolog 1	protein-coding
167802	chr3	133505901	133506700	+	0	NA	Intergenic	Intergenic	-15154	NR_135276	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
37752	chr11	31827051	31827350	+	0	NA	non-coding (NR_117094, exon 1 of 1)	non-coding (NR_117094, exon 1 of 1)	633	NR_117094	103157000		NR_117094	ENSG00000281880	PAUPAR	-	PAX6 upstream antisense RNA	ncRNA
52477	chr12	55970551	55971050	+	0	NA	intron (NM_001798, intron 5 of 6)	intron (NM_001798, intron 5 of 6)	-3113	NM_001252036	5869		NM_002868	ENSG00000111540	RAB5B	-	RAB5B, member RAS oncogene family	protein-coding
237230	chrX	109731371	109731530	+	0	NA	intron (NM_022977, intron 1 of 16)	MIR3|SINE|MIR	-1061	NR_158569	105373311		NR_158569		LOC105373311	-	uncharacterized LOC105373311	ncRNA
175677	chr4	76993301	76993500	+	0	NA	intron (NM_001306147, intron 2 of 11)	intron (NM_001306147, intron 2 of 11)	43648	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
221470	chr8	124473701	124475800	+	0	NA	promoter-TSS (NM_007218)	promoter-TSS (NM_007218)	-130	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
91458	chr17	4810701	4811280	+	0	NA	intron (NM_002663, intron 10 of 24)	intron (NM_002663, intron 10 of 24)	3838	NM_002663	5338		NM_002663	ENSG00000129219	PLD2	PLD1C	phospholipase D2	protein-coding
35640	chr11	1841101	1841300	+	0	NA	exon (NM_001145829, exon 6 of 7)	exon (NM_001145829, exon 6 of 7)	993	NM_001145841	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
88256	chr16	82650721	82651250	+	0	NA	intron (NM_001220488, intron 2 of 14)	intron (NM_001220488, intron 2 of 14)	24016	NM_001220492	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
67281	chr14	69299451	69299550	+	0	NA	intron (NM_020692, intron 1 of 15)	LTR16|LTR|ERVL	39342	NM_020692	57452		NM_020692	ENSG00000100626	GALNT16	GALNACT16|GALNTL1|GalNAc-T16	polypeptide N-acetylgalactosaminyltransferase 16	protein-coding
124655	chr2	2688071	2688430	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-356975	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
49332	chr12	21941171	21942000	+	0	NA	promoter-TSS (NM_005691)	promoter-TSS (NM_005691)	-159	NM_020297	10060		NM_005691	ENSG00000069431	ABCC9	ABC37|ATFB12|CANTU|CMD1O|IDMYS|SUR2	ATP binding cassette subfamily C member 9	protein-coding
108535	chr18	74459371	74459730	+	0	NA	Intergenic	Intergenic	-2242	NM_001044369	125704		NM_001044369	ENSG00000187773	DIPK1C	C18orf51|FAM69C|FNCAD	divergent protein kinase domain 1C	protein-coding
232119	chr9	133781971	133782630	+	0	NA	intron (NM_001134398, intron 19 of 29)	intron (NM_001134398, intron 19 of 29)	-42345	NM_007101	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
102117	chr17	75031101	75031530	+	0	NA	Intergenic	Intergenic	-1256	NR_110835	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
68704	chr14	90428751	90428850	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	26317	NR_146492	101930294		NR_146492	ENSG00000258678	LINC02317	-	long intergenic non-protein coding RNA 2317	ncRNA
39767	chr11	61904521	61905230	+	0	NA	exon (NM_013401, exon 6 of 10)	exon (NM_013401, exon 6 of 10)	12691	NM_013401	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
210263	chr7	99401771	99402130	+	0	NA	intron (NM_014891, intron 3 of 5)	AluY|SINE|Alu	6647	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
207283	chr7	43989851	43990430	+	0	NA	intron (NR_003655, intron 4 of 15)	intron (NR_003655, intron 4 of 15)	-7728	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
85276	chr16	48586071	48586430	+	0	NA	intron (NM_153029, intron 1 of 6)	FAM|SINE|Alu	23930	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
219690	chr8	80682771	80683200	+	0	NA	intron (NM_001367783, intron 4 of 8)	intron (NM_001367783, intron 4 of 8)	191483	NM_001367783	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
21745	chr1	206856751	206857080	+	0	NA	Intergenic	Intergenic	-6650	NM_001385166	50604		NM_018724	ENSG00000162891	IL20	IL-20|IL10D|ZCYTO10	interleukin 20	protein-coding
84249	chr16	30007551	30007850	+	0	NA	intron (NR_104089, intron 5 of 10)	intron (NR_104089, intron 5 of 10)	3327	NM_003586	8448		NM_003586	ENSG00000149927	DOC2A	Doc2	double C2 domain alpha	protein-coding
130781	chr2	86845921	86846180	+	0	NA	intron (NM_172102, intron 3 of 4)	MIR3|SINE|MIR	-15775	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
195527	chr6	37276821	37277080	+	0	NA	intron (NM_017772, intron 2 of 12)	intron (NM_017772, intron 2 of 12)	-18795	NR_104443								
27139	chr10	28298521	28299330	+	0	NA	intron (NM_001318170, intron 1 of 16)	Tigger1|DNA|TcMar-Tigger	4139	NR_134518	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
159116	chr3	12587601	12588180	+	0	NA	intron (NR_148942, intron 12 of 16)	AluJo|SINE|Alu	-26891	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
119196	chr19	39434671	39434830	+	0	NA	intron (NM_001321111, intron 2 of 4)	AluJr|SINE|Alu	1199	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
143341	chr20	25844721	25844980	+	0	NA	non-coding (NR_110001, exon 3 of 3)	non-coding (NR_110001, exon 3 of 3)	9171	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
207912	chr7	50614771	50615130	+	0	NA	intron (NM_001001549, intron 7 of 14)	intron (NM_001001549, intron 7 of 14)	-49545	NM_001082971	1644		NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
9863	chr1	54291901	54292300	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	55657	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
162969	chr3	49687701	49687900	+	0	NA	exon (NM_020998, exon 2 of 18)	exon (NM_020998, exon 2 of 18)	963	NM_020998	4485		NM_020998	ENSG00000173531	MST1	D3F15S2|DNF15S2|HGFL|MSP|NF15S2	macrophage stimulating 1	protein-coding
153340	chr22	24407951	24408150	+	0	NA	intron (NM_001254732, intron 13 of 14)	intron (NM_001254732, intron 13 of 14)	-15547	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
153875	chr22	30265271	30269030	+	0	NA	promoter-TSS (NM_001319108)	promoter-TSS (NM_001319108)	-299	NM_020530	5008		NM_020530	ENSG00000099985	OSM	-	oncostatin M	protein-coding
137214	chr2	191322001	191322300	+	0	NA	intron (NM_001161819, intron 3 of 30)	intron (NM_001161819, intron 3 of 30)	76746	NM_001330238	4430		NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
185007	chr5	115246301	115246700	+	0	NA	intron (NM_005023, intron 2 of 8)	intron (NM_005023, intron 2 of 8)	16377	NM_005023	5229		NM_005023	ENSG00000164219	PGGT1B	BGGI|GGTI	protein geranylgeranyltransferase type I subunit beta	protein-coding
174939	chr4	49132371	49132730	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	145908	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
12956	chr1	110877021	110877280	+	0	NA	intron (NM_001040033, intron 2 of 8)	L1MC4|LINE|L1	4002	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
56445	chr12	113862721	113863180	+	0	NA	intron (NM_016196, intron 21 of 23)	intron (NM_016196, intron 21 of 23)	-89267	NR_110025	100506465		NR_110025	ENSG00000249550	LINC01234	LCAL84|MBOP|onco-lncRNA-32	long intergenic non-protein coding RNA 1234	ncRNA
1650	chr1	3809871	3810730	+	0	NA	Intergenic	LTR3B_|LTR|ERVK	-13802	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
190447	chr5	179860171	179860480	+	0	NA	non-coding (NR_134283, exon 2 of 2)	non-coding (NR_134283, exon 2 of 2)	1322	NR_134283	100996419		NR_134283	ENSG00000245317	MRNIP-DT	-	MRNIP divergent transcript	ncRNA
54728	chr12	93641371	93641600	+	0	NA	Intergenic	Intergenic	-35886	NM_001320100	8738		NM_003805	ENSG00000169372	CRADD	MRT34|RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding
85083	chr16	32982551	32982980	+	0	NA	Intergenic	Intergenic	-97623	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
104066	chr17	80205451	80205750	+	0	NA	exon (NM_024110, exon 19 of 21)	exon (NM_024110, exon 19 of 21)	14733	NM_001352921	6448		NM_000199	ENSG00000181523	SGSH	HSS|MPS3A|SFMD	N-sulfoglucosamine sulfohydrolase	protein-coding
60672	chr13	43057671	43058480	+	0	NA	intron (NM_013238, intron 1 of 5)	L1PB1|LINE|L1	34489	NM_013238	29103		NM_013238	ENSG00000120675	DNAJC15	DNAJD1|HSD18|MCJ	DnaJ heat shock protein family (Hsp40) member C15	protein-coding
181522	chr5	43041701	43043580	+	0	NA	non-coding (NR_015447, exon 1 of 2)	non-coding (NR_015447, exon 1 of 2)	506	NR_015447	153684		NM_194290	ENSG00000215068	ANXA2R-AS1	-	ANXA2R antisense RNA 1	ncRNA
216594	chr8	22043571	22043730	+	0	NA	intron (NM_001304478, intron 2 of 4)	intron (NM_001304478, intron 2 of 4)	830	NM_003867	8822		NM_003867	ENSG00000158815	FGF17	FGF-13|FGF-17|HH20	fibroblast growth factor 17	protein-coding
77232	chr15	81286401	81287200	+	0	NA	intron (NM_172217, intron 10 of 18)	THE1B|LTR|ERVL-MaLR	-10170	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
107019	chr18	32090801	32091000	+	0	NA	promoter-TSS (NM_016271)	promoter-TSS (NM_016271)	-974	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
237017	chrX	102599071	102600500	+	0	NA	non-coding (NR_146584, exon 1 of 19)	non-coding (NR_146584, exon 1 of 19)	270	NM_022838	64860		NM_022838	ENSG00000125962	ARMCX5	GASP5	armadillo repeat containing X-linked 5	protein-coding
74713	chr15	63121351	63122100	+	0	NA	promoter-TSS (NM_001288585)	promoter-TSS (NM_001288585)	-136	NM_032857	114294		NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
117503	chr19	19959051	19959410	+	0	NA	Intergenic	LTR13|LTR|ERVK	58284	NM_031218	81931		NM_031218	ENSG00000184635	ZNF93	HPF34|HTF34|TF34|ZNF505	zinc finger protein 93	protein-coding
209822	chr7	88202971	88203130	+	0	NA	TTS (NM_001324418)	TTS (NM_001324418)	-13610	NR_120517	102723885		NR_120517		SRI-AS1	-	SRI antisense RNA 1	ncRNA
26869	chr10	24951721	24953000	+	0	NA	intron (NM_020200, intron 1 of 8)	CpG	246	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
54183	chr12	77324851	77325030	+	0	NA	Intergenic	(GGC)n|Simple_repeat|Simple_repeat	-259371	NM_203394	144455		NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
55700	chr12	107760551	107762230	+	0	NA	promoter-TSS (NM_012406)	promoter-TSS (NM_012406)	-253	NM_012406	11108		NM_012406	ENSG00000110851	PRDM4	PFM1	PR/SET domain 4	protein-coding
177555	chr4	119210571	119210730	+	0	NA	intron (NR_125931, intron 1 of 2)	intron (NR_125931, intron 1 of 2)	-1977	NM_019050	54532		NM_019050	ENSG00000145390	USP53	PFIC7	ubiquitin specific peptidase 53	protein-coding
201833	chr6	150070351	150070450	+	0	NA	Intergenic	Intergenic	-1279	NM_024518	79465		NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
200611	chr6	136762601	136763330	+	0	NA	intron (NM_005923, intron 1 of 29)	intron (NM_005923, intron 1 of 29)	-21082	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
138834	chr2	216417421	216417880	+	0	NA	intron (NM_014140, intron 4 of 17)	MLT1B|LTR|ERVL-MaLR	4885	NM_001127207	50485		NM_014140	ENSG00000138375	SMARCAL1	HARP|HHARP	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1	protein-coding
165074	chr3	71465371	71465930	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	76439	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
219946	chr8	89233421	89233730	+	0	NA	Intergenic	MER4D0|LTR|ERV1	524136	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
32462	chr10	102643701	102644500	+	0	NA	promoter-TSS (NM_001345950)	promoter-TSS (NM_001345950)	-379	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
191002	chr6	3066351	3066850	+	0	NA	intron (NM_001354931, intron 1 of 9)	L1MC2|LINE|L1	-1778	NM_001354934	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
9394	chr1	47433701	47434400	+	0	NA	non-coding (NR_026878, exon 1 of 1)	non-coding (NR_026878, exon 1 of 1)	591	NR_026878	84793		NM_032707	ENSG00000237424	FOXD2-AS1	-	FOXD2 adjacent opposite strand RNA 1	ncRNA
226829	chr9	77780321	77780780	+	0	NA	intron (NM_002072, intron 5 of 6)	L1MA5A|LINE|L1	-132228	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
77454	chr15	84350151	84350530	+	0	NA	Intergenic	Intergenic	-72179	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
76598	chr15	75359651	75360150	+	0	NA	intron (NM_001256494, intron 15 of 25)	intron (NM_001256494, intron 15 of 25)	-6215	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
186730	chr5	139281001	139281330	+	0	NA	intron (NM_001282278, intron 4 of 16)	AluJb|SINE|Alu	2385	NR_002915	26821		NR_002915	ENSG00000200959	SNORA74A	RNU19|U19	small nucleolar RNA, H/ACA box 74A	snoRNA
189533	chr5	173889971	173890700	+	0	NA	exon (NM_001308191, exon 1 of 8)	exon (NM_001308191, exon 1 of 8)	1986	NM_001308191	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
194682	chr6	33679601	33679800	+	0	NA	intron (NM_002224, intron 30 of 57)	L2c|LINE|L2	-18428	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
51926	chr12	53699101	53699300	+	0	NA	Intergenic	MIRb|SINE|MIR	-22870	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
134684	chr2	144479971	144480330	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-39464	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
208003	chr7	55534351	55535900	+	0	NA	intron (NM_001321243, intron 1 of 5)	intron (NM_001321243, intron 1 of 5)	2569	NM_001321242	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
88413	chr16	84673301	84673500	+	0	NA	Intergenic	Intergenic	24889	NM_024731	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
205088	chr7	6659671	6659830	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	22432	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
34436	chr10	132417771	132417930	+	0	NA	TTS (NM_001098637)	TTS (NM_001098637)	20650	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
131004	chr2	87812371	87812730	+	0	NA	intron (NM_001382344, intron 4 of 22).2	L2|LINE|L2	13217	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
211660	chr7	106268901	106269730	+	0	NA	intron (NM_005746, intron 4 of 10)	intron (NM_005746, intron 4 of 10)	15668	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
125126	chr2	9830851	9831350	+	0	NA	Intergenic	Intergenic	-12342	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
54461	chr12	91948601	91948800	+	0	NA	Intergenic	Intergenic	193013	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
58230	chr12	128637971	128638330	+	0	NA	intron (NM_001136103, intron 4 of 8)	intron (NM_001136103, intron 4 of 8)	185808	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
131331	chr2	96140071	96140500	+	0	NA	Intergenic	AluSz|SINE|Alu	-1849	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
226241	chr9	66697101	66698100	+	0	NA	Intergenic	L1P4b|LINE|L1	-203125	NM_033160	26149		NM_033160	ENSG00000274349	ZNF658	-	zinc finger protein 658	protein-coding
84021	chr16	29470851	29471570	+	0	NA	Intergenic	LTR13|LTR|ERVK	-3632	NR_002556	388242		NR_002556	ENSG00000290678	LOC388242	-	SAGA complex associated factor 29 pseudogene	pseudo
198832	chr6	109120621	109120980	+	0	NA	intron (NM_001350655, intron 2 of 11)	intron (NM_001350655, intron 2 of 11)	-8504	NM_173830	285753		NM_173830	ENSG00000183137	CEP57L1	C6orf182|bA487F23.2|cep57R	centrosomal protein 57 like 1	protein-coding
160057	chr3	18556301	18556870	+	0	NA	Intergenic	Intergenic	-110993	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
27936	chr10	42071271	42071430	+	0	NA	Intergenic	Intergenic	296695	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
111166	chr19	3340071	3340680	+	0	NA	Intergenic	Intergenic	-19255	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
225620	chr9	36216071	36216650	+	0	NA	3' UTR (NM_001190388, exon 11 of 11)	3' UTR (NM_001190388, exon 11 of 11)	25439	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
36712	chr11	9001721	9002330	+	0	NA	intron (NM_020645, intron 1 of 6)	intron (NM_020645, intron 1 of 6)	1976	NM_020645	56675		NM_020645	ENSG00000175352	NRIP3	C11orf14|NY-SAR-105	nuclear receptor interacting protein 3	protein-coding
218519	chr8	53712371	53712530	+	0	NA	Intergenic	Intergenic	130592	NM_213620	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
59404	chr13	25243251	25243550	+	0	NA	Intergenic	AluSz|SINE|Alu	44088	NM_001385233	9107		NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
171427	chr3	196249951	196250250	+	0	NA	intron (NM_005017, intron 4 of 9)	intron (NM_005017, intron 4 of 9)	33566	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
204613	chr7	5364301	5365080	+	0	NA	intron (NM_001080495, intron 11 of 29)	AluSz6|SINE|Alu	58856	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
123886	chr19	55305301	55306300	+	0	NA	intron (NM_032430, intron 16 of 18)	intron (NM_032430, intron 16 of 18)	19541	NM_001085488	284417		NM_001085488	ENSG00000180061	TMEM150B	DRAM3|TMEM224|TTN2	transmembrane protein 150B	protein-coding
112709	chr19	7179121	7179400	+	0	NA	intron (NM_001079817, intron 3 of 20)	MER21C|LTR|ERVL	109557	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
79642	chr16	1174451	1174950	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	21459	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
211589	chr7	105801471	105801830	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	74935	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
54800	chr12	94458421	94458970	+	0	NA	intron (NM_001368039, intron 1 of 16)	AluSx|SINE|Alu	1172	NM_001346457	51134		NM_016122	ENSG00000173588	CEP83	CCDC41|NPHP18|NY-REN-58	centrosomal protein 83	protein-coding
12159	chr1	100282951	100283050	+	0	NA	intron (NM_001130841, intron 9 of 11)	AluSz|SINE|Alu	1759	NR_030279	693138		NR_030279	ENSG00000207750	MIR553	MIRN553|hsa-mir-553	microRNA 553	ncRNA
75813	chr15	69159821	69162080	+	0	NA	intron (NM_015554, intron 1 of 4)	CpG	315	NM_001324094	26035		NM_015554	ENSG00000138604	GLCE	HSEPI	glucuronic acid epimerase	protein-coding
119372	chr19	40161721	40162200	+	0	NA	Intergenic	Intergenic	-29466	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
50279	chr12	46361751	46362430	+	0	NA	intron (NM_001307936, intron 14 of 14)	intron (NM_001307936, intron 14 of 14)	10683	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
197983	chr6	90037571	90037930	+	0	NA	intron (NM_021813, intron 5 of 8)	MLT1C|LTR|ERVL-MaLR	143281	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
214261	chr7	148962551	148963780	+	0	NA	promoter-TSS (NR_004393)	promoter-TSS (NR_004393)	-150	NR_004393	6086		NR_004393	ENSG00000252316	RNY4	HY4|Y4	RNA, Ro60-associated Y4	ncRNA
65234	chr14	49865151	49866030	+	0	NA	Intergenic	Intergenic	-2741	NR_027260	378706		NR_027260	ENSG00000274012	RN7SL2	7L1C|7L30.1|7SL1c|RNSRP2	RNA component of signal recognition particle 7SL2	scRNA
122078	chr19	48724571	48725580	+	0	NA	intron (NM_017805, intron 8 of 11)	intron (NM_017805, intron 8 of 11)	-5350	NM_001130915	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
133476	chr2	119864021	119864560	+	0	NA	intron (NM_002830, intron 3 of 26)	LTR56|LTR|ERV1	104368	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
28360	chr10	47167501	47167700	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-132597	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
18537	chr1	162069501	162071000	+	0	NA	exon (NM_001164757, exon 1 of 10)	exon (NM_001164757, exon 1 of 10)	559	NM_001164757	9722		NM_014697	ENSG00000198929	NOS1AP	6330408P19Rik|CAPON|NPHS22	nitric oxide synthase 1 adaptor protein	protein-coding
227355	chr9	89475051	89475150	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	4790	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
222910	chr8	142840771	142840950	+	0	NA	intron (NM_002066, intron 2 of 3)	intron (NM_002066, intron 2 of 3)	6059	NM_002066	2765		NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
114552	chr19	12884771	12886530	+	0	NA	exon (NM_006563, exon 2 of 3)	exon (NM_006563, exon 2 of 3)	1551	NM_006563	10661		NM_006563	ENSG00000105610	KLF1	EKLF|EKLF/KLF1	KLF transcription factor 1	protein-coding
206416	chr7	32500901	32501530	+	0	NA	intron (NM_015060, intron 1 of 15)	intron (NM_015060, intron 1 of 15)	5726	NM_015060	23080		NM_015060	ENSG00000105778	AVL9	KIAA0241	AVL9 cell migration associated	protein-coding
80921	chr16	3797271	3798480	+	0	NA	intron (NM_004380, intron 3 of 30)	intron (NM_004380, intron 3 of 30)	-80351	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
55828	chr12	108859651	108860480	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-2482	NM_001161330	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
96607	chr17	40547101	40548300	+	0	NA	Intergenic	Intergenic	12694	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
186098	chr5	134119631	134120480	+	0	NA	intron (NR_033449, intron 1 of 7)	intron (NR_033449, intron 1 of 7)	-3563	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
97932	chr17	45159021	45160030	+	0	NA	promoter-TSS (NM_001303438)	promoter-TSS (NM_001303438)	-649	NM_001303437	124790		NM_144608	ENSG00000168517	HEXIM2	L3	HEXIM P-TEFb complex subunit 2	protein-coding
217035	chr8	23250071	23251100	+	0	NA	intron (NM_001363183, intron 2 of 8)	intron (NM_001363183, intron 2 of 8)	3944	NM_001317899	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
197212	chr6	63643471	63644280	+	0	NA	intron (NM_001290260, intron 1 of 3)	MARNA|DNA|TcMar-Mariner	-2651	NM_015153	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
53384	chr12	64687501	64688500	+	0	NA	intron (NR_040718, intron 2 of 3)	intron (NR_040718, intron 2 of 3)	-65395	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
169275	chr3	158095871	158096030	+	0	NA	TTS (NM_006884)	TTS (NM_006884)	10213	NM_006884	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
134783	chr2	147631401	147631630	+	0	NA	Intergenic	Intergenic	-213002	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
28395	chr10	47564041	47564230	+	0	NA	Intergenic	Intergenic	-10612	NR_024495	642826		NR_024495		BMS1P2	BMS1LP2|BMS1LP6|BMS1P6|bA144G6.1	BMS1 pseudogene 2	pseudo
7324	chr1	32654201	32654400	+	0	NA	intron (NM_005610, intron 2 of 11)	AluJb|SINE|Alu	2942	NM_001135256	5928		NM_005610	ENSG00000162521	RBBP4	NURF55|RBAP48|lin-53	RB binding protein 4, chromatin remodeling factor	protein-coding
231207	chr9	129947971	129948880	+	0	NA	intron (NM_001363755, intron 6 of 15)	AluSx|SINE|Alu	78820	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
101209	chr17	65557301	65557980	+	0	NA	intron (NM_004655, intron 2 of 10)	intron (NM_004655, intron 2 of 10)	4008	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
78068	chr15	90184701	90185730	+	0	NA	intron (NM_001324029, intron 1 of 12)	CpG	295	NM_001324029	10509		NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
65452	chr14	51743071	51744130	+	0	NA	Intergenic	SATR1|Satellite|Satellite	26317	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
87985	chr16	80656451	80657350	+	0	NA	intron (NM_152342, intron 2 of 6)	intron (NM_152342, intron 2 of 6)	-84092	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
51129	chr12	50108401	50108600	+	0	NA	intron (NM_005276, intron 7 of 7)	intron (NM_005276, intron 7 of 7)	-3736	NM_001257133	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
55121	chr12	98592851	98594450	+	0	NA	promoter-TSS (NM_005888)	promoter-TSS (NM_005888)	25	NM_005888	5250		NM_002635	ENSG00000075415	SLC25A3	OK/SW-cl.48|PHC|PTP|PiC	solute carrier family 25 member 3	protein-coding
204714	chr7	5540751	5541050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10299	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
62008	chr13	82688321	82688980	+	0	NA	Intergenic	Intergenic	1193743	NM_052910	114798		NM_052910	ENSG00000178235	SLITRK1	LRRC12|TTM	SLIT and NTRK like family member 1	protein-coding
185801	chr5	132426471	132427000	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	15806	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
23329	chr1	228099371	228100500	+	0	NA	TTS (NR_130975)	TTS (NR_130975)	2672	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
170654	chr3	187138701	187140200	+	0	NA	promoter-TSS (NM_052969)	promoter-TSS (NM_052969)	46	NM_052969	116832		NM_052969	ENSG00000163923	RPL39L	L39-2|RPL39L1	ribosomal protein L39 like	protein-coding
166745	chr3	122030371	122031130	+	0	NA	Intergenic	Intergenic	-8503	NM_001199800	286676		NM_175924	ENSG00000145103	ILDR1	DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta	immunoglobulin like domain containing receptor 1	protein-coding
76414	chr15	74770971	74771930	+	0	NA	Intergenic	AluSz|SINE|Alu	-10630	NM_001127190	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
122934	chr19	50680271	50680680	+	0	NA	intron (NM_016148, intron 21 of 23)	intron (NM_016148, intron 21 of 23)	31030	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
27307	chr10	30467901	30468100	+	0	NA	Intergenic	Intergenic	33354	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
141433	chr2	241003101	241003300	+	0	NA	intron (NM_001080437, intron 1 of 31)	intron (NM_001080437, intron 1 of 31)	4582	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
167155	chr3	128057151	128057450	+	0	NA	intron (NM_013336, intron 5 of 11)	intron (NM_013336, intron 5 of 11)	4863	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
36224	chr11	3609571	3610130	+	0	NA	promoter-TSS (NR_164660)	promoter-TSS (NR_164660)	-474	NR_164660	115995503		NR_164660	ENSG00000293282	XNDC1CP	-	XRCC1 N-terminal domain containing 1, C-terminal like pseudogene	pseudo
156236	chr22	40387071	40387230	+	0	NA	intron (NM_001350047, intron 1 of 20)	intron (NM_001350047, intron 1 of 20)	16556	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
186066	chr5	134084851	134085280	+	0	NA	Intergenic	AluY|SINE|Alu	-29616	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
173810	chr4	17814201	17814400	+	0	NA	intron (NR_073124, intron 3 of 19)	intron (NR_073124, intron 3 of 19)	3321	NM_022346	64151		NM_022346	ENSG00000109805	NCAPG	CAPG|CHCG|NY-MEL-3|YCG1	non-SMC condensin I complex subunit G	protein-coding
68472	chr14	87953971	87954330	+	0	NA	intron (NM_001201401, intron 9 of 15)	intron (NM_001201401, intron 9 of 15)	39032	NM_000153	2581		NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
149422	chr21	31236701	31236900	+	0	NA	intron (NM_001353694, intron 6 of 27)	intron (NM_001353694, intron 6 of 27)	-75860	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
21184	chr1	203800021	203800280	+	0	NA	exon (NM_001174108, exon 1 of 1)	exon (NM_001174108, exon 1 of 1)	2627	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
104730	chr17	81651871	81652230	+	0	NA	intron (NR_158591, intron 1 of 2)	intron (NR_158591, intron 1 of 2)	1664	NM_001365725	5148		NM_002602	ENSG00000185527	PDE6G	PDEG|RP57	phosphodiesterase 6G	protein-coding
238231	chrX	140764471	140764630	+	0	NA	intron (NR_104228, intron 3 of 3)	CpG	20008	NM_004065	1038		NM_004065		CDR1	CDR|CDR34|CDR62A	cerebellar degeneration related 1	unknown
211948	chr7	112478451	112478830	+	0	NA	Intergenic	Intergenic	-2213	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
170904	chr3	194024021	194024280	+	0	NA	intron (NR_136179, intron 1 of 2)	intron (NR_136179, intron 1 of 2)	-20491	NR_033944	647323		NR_033944	ENSG00000214146	LINC02026	-	long intergenic non-protein coding RNA 2026	ncRNA
180638	chr5	16936071	16936630	+	0	NA	promoter-TSS (NM_012334)	promoter-TSS (NM_012334)	-62	NM_012334	4651		NM_012334	ENSG00000145555	MYO10	MyoX	myosin X	protein-coding
113062	chr19	8193201	8194830	+	0	NA	Intergenic	Intergenic	-15355	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
112631	chr19	6777471	6777980	+	0	NA	intron (NM_005428, intron 1 of 26)	intron (NM_005428, intron 1 of 26)	5017	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
232360	chr9	135726271	135726630	+	0	NA	intron (NM_020822, intron 2 of 30)	intron (NM_020822, intron 2 of 30)	24265	NM_020822	57582		NM_020822	ENSG00000107147	KCNT1	DEE14|EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
219973	chr8	89763971	89764530	+	0	NA	intron (NM_003821, intron 2 of 10)	MamGypsy2-LTR|LTR|Gypsy	6434	NM_003821	8767		NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor interacting serine/threonine kinase 2	protein-coding
66166	chr14	60632451	60632850	+	0	NA	Intergenic	Intergenic	-6566	NR_126480	104548971		NR_126480		SALRNA1	SAL-RNA1|XLOC_023166	senescence associated long non-coding RNA 1	ncRNA
153454	chr22	25202321	25202600	+	0	NA	intron (NM_004076, intron 2 of 5)	intron (NM_004076, intron 2 of 5)	2602	NM_004076	1417		NM_004076	ENSG00000100053	CRYBB3	CATCN2|CRYB3|CTRCT22	crystallin beta B3	protein-coding
103250	chr17	77555801	77556030	+	0	NA	intron (NR_040050, intron 1 of 1)	intron (NR_040050, intron 1 of 1)	8974	NR_040050	100507351		NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
83549	chr16	28069221	28069480	+	0	NA	Intergenic	AluJo|SINE|Alu	-5636	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
51097	chr12	50030221	50030880	+	0	NA	Intergenic	AluSz|SINE|Alu	-4993	NM_001320004	29127		NM_013277	ENSG00000161800	RACGAP1	CDAN3B|CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
99465	chr17	50153271	50153430	+	0	NA	Intergenic	Intergenic	-2673	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
94894	chr17	31551371	31551530	+	0	NA	Intergenic	AluY|SINE|Alu	-8546	NR_029710	406968		NR_029710	ENSG00000207614	MIR193A	MIRN193|MIRN193A|mir-193a	microRNA 193a	ncRNA
42530	chr11	71418951	71419050	+	0	NA	intron (NR_038862, intron 2 of 2)	intron (NR_038862, intron 2 of 2)	4354	NR_038862	399923		NM_001001680	ENSG00000293435	ACTE1P	-	actin epsilon 1, pseudogene	ncRNA
105542	chr17	83196351	83196850	+	0	NA	Intergenic	Intergenic	-30297	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
229771	chr9	125199021	125199630	+	0	NA	TTS (NR_135145)	TTS (NR_135145)	1071	NR_135145	105376271		NR_135145		LOC105376271	-	uncharacterized LOC105376271	ncRNA
111198	chr19	3464151	3464450	+	0	NA	3' UTR (NM_001245005, exon 10 of 10)	3' UTR (NM_001245005, exon 10 of 10)	16225	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
151118	chr21	44884371	44885200	+	0	NA	Intergenic	Intergenic	-10882	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
170753	chr3	188397051	188397750	+	0	NA	intron (NM_001167671, intron 3 of 11)	intron (NM_001167671, intron 3 of 11)	171266	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
123507	chr19	54210401	54212230	+	0	NA	Intergenic	Intergenic	10457	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
138307	chr2	203737351	203737650	+	0	NA	3' UTR (NM_001243077, exon 4 of 4)	3' UTR (NM_001243077, exon 4 of 4)	30861	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
208309	chr7	66114251	66115980	+	0	NA	intron (NM_001040648, intron 1 of 2)	CpG	268	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
210137	chr7	98217201	98217880	+	0	NA	intron (NM_015395, intron 25 of 25)	intron (NM_015395, intron 25 of 25)	6101	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
92584	chr17	9237971	9238400	+	0	NA	intron (NM_004822, intron 6 of 6)	intron (NM_004822, intron 6 of 6)	-59067	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
19673	chr1	180908821	180909080	+	0	NA	Intergenic	Intergenic	-3947	NM_020950	57710		NM_020950	ENSG00000135835	KIAA1614	-	KIAA1614	protein-coding
213969	chr7	142793401	142793730	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	22595	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
47443	chr12	3658321	3658600	+	0	NA	intron (NM_032680, intron 8 of 10)	intron (NM_032680, intron 8 of 10)	94649	NM_032680	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
99490	chr17	50189151	50189680	+	0	NA	exon (NM_000088, exon 39 of 51)	exon (NM_000088, exon 39 of 51)	12216	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
237811	chrX	129952471	129954450	+	0	NA	Intergenic	CpG	-27519	NM_001184772	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
100422	chr17	60614321	60614580	+	0	NA	intron (NM_003620, intron 1 of 5)	LTR12C|LTR|ERV1	14257	NM_003620	8493		NM_003620	ENSG00000170836	PPM1D	IDDGIP|JDVS|PP2C-DELTA|WIP1	protein phosphatase, Mg2+/Mn2+ dependent 1D	protein-coding
110705	chr19	2299951	2300050	+	0	NA	intron (NM_001101391, intron 1 of 1)	AluY|SINE|Alu	8154	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
46246	chr11	124737501	124737980	+	0	NA	Intergenic	Intergenic	-2202	NM_006176	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
185665	chr5	131606571	131606730	+	0	NA	intron (NM_016340, intron 1 of 27)	MLT1G3|LTR|ERVL-MaLR	28579	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
237536	chrX	120380501	120381000	+	0	NA	3' UTR (NM_001142447, exon 8 of 8)	3' UTR (NM_001142447, exon 8 of 8)	18661	NM_001142447	23439		NM_012069	ENSG00000101892	ATP1B4	-	ATPase Na+/K+ transporting family member beta 4	protein-coding
155103	chr22	37602771	37603330	+	0	NA	Intergenic	AluSx|SINE|Alu	-5424	NM_001172687	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
164853	chr3	71053501	71053900	+	0	NA	exon (NM_001244815, exon 3 of 16)	exon (NM_001244815, exon 3 of 16)	11224	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
67836	chr14	73934451	73934750	+	0	NA	intron (NM_152445, intron 8 of 8)	AluJb|SINE|Alu	-15334	NM_182480	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
93770	chr17	20154501	20154700	+	0	NA	intron (NM_001033553, intron 3 of 14)	L2a|LINE|L2	-1472	NM_001033555	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
9043	chr1	44793271	44794020	+	0	NA	Intergenic	L2b|LINE|L2	-5475	NM_153274	266675		NM_153274	ENSG00000142959	BEST4	VMD2L2	bestrophin 4	protein-coding
158188	chr22	50233351	50233650	+	0	NA	exon (NM_020461, exon 3 of 25)	exon (NM_020461, exon 3 of 25)	11523	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
144927	chr20	36991171	36991330	+	0	NA	Intergenic	AluSc8|SINE|Alu	-39542	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
230866	chr9	129169851	129170350	+	0	NA	Intergenic	AluSx3|SINE|Alu	8161	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
86993	chr16	68230371	68230550	+	0	NA	exon (NM_024939, exon 14 of 15)	exon (NM_024939, exon 14 of 15)	3039	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
191302	chr6	6678801	6679000	+	0	NA	Intergenic	Intergenic	-56074	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
86822	chr16	67880551	67880980	+	0	NA	exon (NM_014329, exon 18 of 29)	exon (NM_014329, exon 18 of 29)	-4120	NM_001348682	123904		NM_198443	ENSG00000188038	NRN1L	MRCC2446|UNQ2446|cpg15-2	neuritin 1 like	protein-coding
138801	chr2	216131001	216131600	+	0	NA	intron (NM_021141, intron 9 of 20)	intron (NM_021141, intron 9 of 20)	21952	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
165374	chr3	93973221	93974050	+	0	NA	intron (NM_001314077, intron 1 of 15)	intron (NM_001314077, intron 1 of 15)	261	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
93250	chr17	17954751	17955050	+	0	NA	intron (NM_001082968, intron 1 of 14)	intron (NM_001082968, intron 1 of 14)	17500	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
55730	chr12	108312701	108312900	+	0	NA	intron (NM_001142344, intron 1 of 2)	intron (NM_001142344, intron 1 of 2)	7862	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
28025	chr10	43208971	43209130	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	20689	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
113178	chr19	8401921	8402580	+	0	NA	exon (NM_004218, exon 3 of 5)	exon (NM_004218, exon 3 of 5)	-11053	NM_001005415	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
201765	chr6	149947601	149948030	+	0	NA	intron (NM_025217, intron 4 of 4)	intron (NM_025217, intron 4 of 4)	5801	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
69659	chr14	97977731	97979180	+	0	NA	promoter-TSS (NR_015430)	promoter-TSS (NR_015430)	-331	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
232736	chr9	136631351	136631760	+	0	NA	Intergenic	(ACAC)n|Simple_repeat|Simple_repeat	-14374	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
49748	chr12	31731871	31732230	+	0	NA	Intergenic	Intergenic	-2876	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
225402	chr9	35049421	35049680	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	7310	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
154508	chr22	35840371	35840630	+	0	NA	promoter-TSS (NM_001031695)	promoter-TSS (NM_001031695)	-36	NM_014309	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
237317	chrX	118351551	118351950	+	0	NA	intron (NM_001184966, intron 1 of 17)	AluSx|SINE|Alu	5644	NM_001184965	54521		NM_019045	ENSG00000131725	WDR44	RAB11BP|RPH11|SYM-4	WD repeat domain 44	protein-coding
159739	chr3	15861351	15861450	+	0	NA	Intergenic	MIRc|SINE|MIR	-1586	NM_001349279	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
77202	chr15	80920351	80920650	+	0	NA	intron (NM_001293298, intron 15 of 29)	intron (NM_001293298, intron 15 of 29)	69319	NR_126327	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
107319	chr18	45136721	45136980	+	0	NA	Intergenic	Intergenic	-31113	NM_001371319	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
104366	chr17	81002051	81002150	+	0	NA	Intergenic	AluSc|SINE|Alu	10259	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
133449	chr2	119675401	119676200	+	0	NA	Intergenic	Intergenic	-3367	NM_001105198	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
203447	chr7	372001	372330	+	0	NA	Intergenic	Intergenic	-7260	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
43482	chr11	78290421	78290680	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	51330	NM_012296	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
1653	chr1	3856621	3858330	+	0	NA	promoter-TSS (NM_001320132)	promoter-TSS (NM_001320132)	-1	NR_135152	1677		NM_004402	ENSG00000169598	DFFB	CAD|CPAN|DFF-40|DFF2|DFF40	DNA fragmentation factor subunit beta	protein-coding
48350	chr12	9362971	9363530	+	0	NA	Intergenic	Intergenic	-4214	NR_120479	101930452		NR_120479	ENSG00000260423	LINC02367	-	long intergenic non-protein coding RNA 2367	ncRNA
90161	chr17	215501	216200	+	0	NA	intron (NM_006987, intron 8 of 9).2	intron (NM_006987, intron 8 of 9).2	-28599	NR_104420	100506371		NR_104420		LINC02091	-	long intergenic non-protein coding RNA 2091	ncRNA
88849	chr16	87603071	87603230	+	0	NA	exon (NM_001271605, exon 1 of 2)	exon (NM_001271605, exon 1 of 2)	642	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
185307	chr5	126747271	126747430	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	29136	NR_134485	102723557		NR_134485	ENSG00000251072	LMNB1-DT	-	LMNB1 divergent transcript	ncRNA
38481	chr11	45845551	45845650	+	0	NA	Intergenic	L2b|LINE|L2	-1518	NM_001127457	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
153040	chr22	23263301	23264500	+	0	NA	non-coding (NR_033408, exon 1 of 1)	non-coding (NR_033408, exon 1 of 1)	1133	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
9860	chr1	54288821	54289080	+	0	NA	intron (NM_145716, intron 4 of 17)	AluY|SINE|Alu	52507	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
64487	chr14	24310171	24312110	+	0	NA	promoter-TSS (NM_001143919).2	promoter-TSS (NM_001143919).2	295	NM_001318807	27141		NM_014430	ENSG00000136305	CIDEB	-	cell death inducing DFFA like effector b	protein-coding
84391	chr16	30319001	30319400	+	0	NA	intron (NR_002453, intron 1 of 12)	AluJb|SINE|Alu	16174	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
27109	chr10	27563671	27563830	+	0	NA	Intergenic	Intergenic	59446	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
82112	chr16	14635121	14635580	+	0	NA	intron (NM_016561, intron 1 of 7)	AluSx1|SINE|Alu	2399	NM_016561	51283		NM_016561	ENSG00000103429	BFAR	BAR|RNF47	bifunctional apoptosis regulator	protein-coding
143041	chr20	21235751	21236200	+	0	NA	intron (NM_001276389, intron 9 of 10)	intron (NM_001276389, intron 9 of 10)	-17686	NR_109956	101929591		NR_109956	ENSG00000232712	KIZ-AS1	-	KIZ antisense RNA 1	ncRNA
212265	chr7	123492621	123492980	+	0	NA	intron (NM_178827, intron 7 of 12)	LTR78|LTR|ERV1	40148	NM_001321293	154865		NM_178827	ENSG00000164675	IQUB	TRS4	IQ motif and ubiquitin domain containing	protein-coding
193611	chr6	30735651	30736250	+	0	NA	intron (NM_001318875, intron 7 of 11).2	intron (NM_001318875, intron 7 of 11).2	6737	NM_005803	10211		NM_005803	ENSG00000137312	FLOT1	-	flotillin 1	protein-coding
49971	chr12	42096051	42096350	+	0	NA	intron (NM_173601, intron 7 of 7)	L1MC4a|LINE|L1	48674	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
90868	chr17	2374751	2375430	+	0	NA	intron (NM_001346700, intron 16 of 22)	intron (NM_001346700, intron 16 of 22)	25970	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
81516	chr16	9013251	9013350	+	0	NA	Intergenic	Intergenic	-49394	NM_003470	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
23127	chr1	226698071	226698630	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-23282	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
68734	chr14	90903021	90903400	+	0	NA	intron (NM_001322235, intron 9 of 17)	intron (NM_001322235, intron 9 of 17)	-86780	NM_001010854	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
74476	chr15	59814271	59814880	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-125255	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
71441	chr14	105682001	105682200	+	0	NA	Intergenic	Intergenic	-9293	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
22743	chr1	224352751	224352850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4079	NR_102347	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
75449	chr15	65823821	65824430	+	0	NA	Intergenic	Intergenic	-31832	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
138665	chr2	212960371	212960730	+	0	NA	Intergenic	MIR3|SINE|MIR	-34214	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
105797	chr18	2910571	2910900	+	0	NA	intron (NM_032048, intron 7 of 7)	intron (NM_032048, intron 7 of 7)	35888	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
49302	chr12	21442271	21442630	+	0	NA	intron (NM_001350913, intron 2 of 10)	intron (NM_001350913, intron 2 of 10)	4535	NM_001350912	79912		NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
146165	chr20	48729471	48729880	+	0	NA	intron (NM_020820, intron 4 of 39)	L2a|LINE|L2	98324	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
235799	chrX	49177401	49178000	+	0	NA	intron (NM_006150, intron 7 of 8)	intron (NM_006150, intron 7 of 8)	5802	NM_002668	5355		NM_002668	ENSG00000102007	PLP2	A4|A4LSB	proteolipid protein 2	protein-coding
131468	chr2	96407321	96408550	+	0	NA	Intergenic	Intergenic	72169	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
102184	chr17	75150951	75151250	+	0	NA	intron (NM_001002033, intron 1 of 5)	AluY|SINE|Alu	2193	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
162963	chr3	49682321	49682780	+	0	NA	exon (NM_001640, exon 19 of 22)	exon (NM_001640, exon 19 of 22)	6213	NM_020998	4485		NM_020998	ENSG00000173531	MST1	D3F15S2|DNF15S2|HGFL|MSP|NF15S2	macrophage stimulating 1	protein-coding
174933	chr4	49125321	49125780	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	138908	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
51327	chr12	51332151	51332450	+	0	NA	intron (NM_001971, intron 6 of 7)	HAL1|LINE|L1	-7632	NM_001290007	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
159951	chr3	17183971	17184330	+	0	NA	intron (NM_001349090, intron 19 of 21)	intron (NM_001349090, intron 19 of 21)	250954	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
78994	chr15	101877771	101877950	+	0	NA	Intergenic	Intergenic	35741	NR_046417	390651		NR_046417	ENSG00000291191	OR4F13P	GPCRLTM7	olfactory receptor family 4 subfamily F member 13 pseudogene	pseudo
149600	chr21	33322871	33323130	+	0	NA	Intergenic	(ATAT)n|Simple_repeat|Simple_repeat	-1395	NM_001384504	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
233424	chr9	137601471	137602350	+	0	NA	Intergenic	AluSz|SINE|Alu	-3730	NM_001317968	92714		NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
2251	chr1	8903421	8903880	+	0	NA	Intergenic	MER21A|LTR|ERVL	24815	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
114635	chr19	12993351	12994150	+	0	NA	Intergenic	Intergenic	-1725	NM_002501	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
232113	chr9	133727101	133727550	+	0	NA	intron (NM_001134707, intron 6 of 20)	intron (NM_001134707, intron 6 of 20)	11027	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
84856	chr16	31140451	31140550	+	0	NA	exon (NM_001258290, exon 13 of 15)	exon (NM_001258290, exon 13 of 15)	-4773	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
29581	chr10	71715171	71715800	+	0	NA	3' UTR (NM_001168390, exon 2 of 2)	3' UTR (NM_001168390, exon 2 of 2)	4293	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
216481	chr8	19813251	19813950	+	0	NA	Intergenic	Intergenic	-3549	NR_148457	55174		NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
37887	chr11	34049751	34050100	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-1806	NM_005898	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
159601	chr3	15202451	15203230	+	0	NA	intron (NR_027927, intron 1 of 4)	intron (NR_027927, intron 1 of 4)	3119	NR_027927	344875		NR_027927	ENSG00000291281	COL6A4P1	COL6A4|COL6A4P|DIVA|DVWA|FAME3|VWA6	collagen type VI alpha 4 pseudogene 1	pseudo
137287	chr2	195543101	195543400	+	0	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	-113708	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
47819	chr12	6588651	6589350	+	0	NA	intron (NM_001273, intron 22 of 39)	AluSx1|SINE|Alu	-7391	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
207289	chr7	43995421	43995680	+	0	NA	intron (NR_003655, intron 4 of 15)	AluJb|SINE|Alu	-2318	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
195070	chr6	35521121	35521580	+	0	NA	Intergenic	Intergenic	-8454	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
5413	chr1	25541601	25542350	+	0	NA	Intergenic	Intergenic	-1631	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
210269	chr7	99411001	99411300	+	0	NA	exon (NM_003910, exon 3 of 6)	exon (NM_003910, exon 3 of 6)	1978	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
45370	chr11	118290921	118291250	+	0	NA	Intergenic	Intergenic	-13645	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
131496	chr2	96530671	96531250	+	0	NA	intron (NR_135564, intron 1 of 2)	MIRb|SINE|MIR	1346	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
149950	chr21	36330401	36331300	+	0	NA	intron (NM_001320446, intron 2 of 17)	Charlie2a|DNA|hAT-Charlie	10653	NM_015358	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
13014	chr1	111192671	111194180	+	0	NA	intron (NM_001271833, intron 7 of 11)	intron (NM_001271833, intron 7 of 11)	7221	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
201839	chr6	150081671	150081930	+	0	NA	Intergenic	Intergenic	-12679	NM_024518	79465		NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
13837	chr1	117634771	117635130	+	0	NA	Intergenic	Intergenic	28902	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
12357	chr1	101236001	101237540	+	0	NA	promoter-TSS (NR_104626)	promoter-TSS (NR_104626)	21	NM_001320730	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
8503	chr1	40859221	40859480	+	0	NA	Intergenic	Intergenic	3013	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
131837	chr2	98663021	98664000	+	0	NA	promoter-TSS (NM_001160154)	promoter-TSS (NM_001160154)	-37	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
227967	chr9	95004171	95005300	+	0	NA	intron (NM_001193329, intron 10 of 15)	CpG	-59181	NR_147614	101928119		NR_147613		LOC101928119	-	uncharacterized LOC101928119	ncRNA
237084	chrX	103817421	103817730	+	0	NA	intron (NR_146560, intron 1 of 6)	L1PA7|LINE|L1	14682	NM_016370	51209		NM_016370	ENSG00000123570	RAB9B	RAB9L|Rab-9L	RAB9B, member RAS oncogene family	protein-coding
23099	chr1	226669951	226670450	+	0	NA	intron (NR_103784, intron 1 of 1)	L1ME4c|LINE|L1	4868	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
146504	chr20	49893701	49894750	+	0	NA	Intergenic	Intergenic	19514	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
230898	chr9	129233101	129233900	+	0	NA	Intergenic	L2c|LINE|L2	-48916	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
225174	chr9	33860171	33860500	+	0	NA	intron (NM_017811, intron 1 of 4)	intron (NM_017811, intron 1 of 4)	43175	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
100600	chr17	63443671	63444030	+	0	NA	intron (NM_001915, intron 1 of 5)	AluJr|SINE|Alu	2334	NM_001017916	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
108161	chr18	62767401	62767600	+	0	NA	intron (NM_194449, intron 1 of 16)	intron (NM_194449, intron 1 of 16)	51959	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
122162	chr19	48891401	48892650	+	0	NA	intron (NM_003323, intron 6 of 12)	LTR5B|LTR|ERVK	6719	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
9111	chr1	45325501	45325900	+	0	NA	Intergenic	Intergenic	-1195	NM_032756	84842		NM_032756	ENSG00000186603	HPDL	4-HPPD-L|GLOXD1|NEDSWMA|SPG83	4-hydroxyphenylpyruvate dioxygenase like	protein-coding
999	chr1	1846501	1846780	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluJr4|SINE|Alu	44447	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
200106	chr6	130196951	130197050	+	0	NA	intron (NM_001258275, intron 7 of 13)	HERVH-int|LTR|ERV1	18885	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
189539	chr5	173903571	173903980	+	0	NA	intron (NM_001308192, intron 1 of 8)	L4_C_Mam|LINE|RTE-X	10724	NM_001308193	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
184708	chr5	109352021	109352550	+	0	NA	intron (NM_014819, intron 7 of 9)	intron (NM_014819, intron 7 of 9)	-25916	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
159865	chr3	16790771	16790930	+	0	NA	Intergenic	Intergenic	-94105	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
98683	chr17	47877051	47877350	+	0	NA	Intergenic	Intergenic	18616	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
226823	chr9	77595571	77595730	+	0	NA	intron (NM_004297, intron 1 of 6)	intron (NM_004297, intron 1 of 6)	52672	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
50759	chr12	49022371	49023630	+	0	NA	intron (NM_003482, intron 51 of 54)	intron (NM_003482, intron 51 of 54)	-4224	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
173204	chr4	6821071	6821230	+	0	NA	intron (NM_014743, intron 2 of 9)	L1M2|LINE|L1	38418	NM_001100590	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
107013	chr18	32075201	32075400	+	0	NA	Intergenic	AluSx|SINE|Alu	-16574	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
104398	chr17	81044751	81044850	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	9649	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
100950	chr17	64489651	64490550	+	0	NA	intron (NM_007215, intron 4 of 7)	AluSc|SINE|Alu	6954	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
6569	chr1	28743421	28743680	+	0	NA	exon (NM_001173128, exon 5 of 6)	exon (NM_001173128, exon 5 of 6)	6610	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
117509	chr19	20038721	20040100	+	0	NA	promoter-TSS (NM_001077349)	promoter-TSS (NM_001077349)	95	NM_033196	91120		NM_033196	ENSG00000197124	ZNF682	BC39498_3	zinc finger protein 682	protein-coding
44193	chr11	96266271	96266780	+	0	NA	intron (NM_032427, intron 1 of 4)	AluY|SINE|Alu	-74913	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
62173	chr13	97346951	97347060	+	0	NA	exon (NM_001382675, exon 5 of 8)	exon (NM_001382675, exon 5 of 8)	-87164	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
45529	chr11	118745471	118746130	+	0	NA	Intergenic	AluJo|SINE|Alu	45148	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
41521	chr11	66266271	66266430	+	0	NA	intron (NM_001134774, intron 13 of 14)	intron (NM_001134774, intron 13 of 14)	-2289	NM_030981	81876		NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
231250	chr9	129988971	129989580	+	0	NA	intron (NM_001363755, intron 2 of 15)	intron (NM_001363755, intron 2 of 15)	53914	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
222617	chr8	141056851	141056950	+	0	NA	Intergenic	Intergenic	-54821	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
192216	chr6	18211121	18211780	+	0	NA	intron (NM_153042, intron 13 of 17)	LTR67B|LTR|ERVL	53080	NM_003472	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
115995	chr19	17099601	17099800	+	0	NA	intron (NM_004145, intron 1 of 39)	AluYk4|SINE|Alu	7465	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
155915	chr22	39567001	39567800	+	0	NA	Intergenic	Intergenic	-3353	NM_021096	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
158453	chr22	50626251	50626350	+	0	NA	intron (NM_001085426, intron 5 of 8)	intron (NM_001085426, intron 5 of 8)	1852	NM_000487	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
167714	chr3	130907921	130908380	+	0	NA	intron (NM_001001487, intron 2 of 28)	L1ME4b|LINE|L1	13600	NM_014382	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
55974	chr12	110120301	110120500	+	0	NA	Intergenic	L1MB7|LINE|L1	-3957	NM_031473	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
175693	chr4	77068601	77068800	+	0	NA	intron (NM_006835, intron 1 of 6)	intron (NM_006835, intron 1 of 6)	6210	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
116040	chr19	17202201	17203000	+	0	NA	intron (NM_004145, intron 28 of 39)	(CATGC)n|Simple_repeat|Simple_repeat	-12757	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
53343	chr12	64638521	64638980	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-16145	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
206541	chr7	35261421	35261880	+	0	NA	Intergenic	CpG	-7550	NM_001166220	57057		NM_020417	ENSG00000164532	TBX20	ASD4	T-box transcription factor 20	protein-coding
84699	chr16	30803001	30803200	+	0	NA	Intergenic	AluJo|SINE|Alu	-15895	NM_001345970	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
17012	chr1	156019851	156022000	+	0	NA	promoter-TSS (NM_003145)	promoter-TSS (NM_003145)	26	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
64039	chr14	22529021	22529580	+	0	NA	Intergenic	L2a|LINE|L2	27762	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
177383	chr4	112144601	112146850	+	0	NA	exon (NM_152400, exon 1 of 2)	exon (NM_152400, exon 1 of 2)	271	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
166469	chr3	114233051	114233530	+	0	NA	Intergenic	Intergenic	4288	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
160281	chr3	25911021	25912080	+	0	NA	Intergenic	Intergenic	-37855	NR_034055	285326		NR_034055	ENSG00000230891	LINC00692	-	long intergenic non-protein coding RNA 692	ncRNA
196691	chr6	44859001	44859200	+	0	NA	intron (NM_001350327, intron 9 of 9)	intron (NM_001350327, intron 9 of 9)	-307219	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
99823	chr17	55005671	55005830	+	0	NA	intron (NM_178509, intron 7 of 17)	intron (NM_178509, intron 7 of 17)	-36965	NM_001162862	1353		NM_004375	ENSG00000166260	COX11	COX11P|MC4DN23	cytochrome c oxidase copper chaperone COX11	protein-coding
105779	chr18	2810701	2811100	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-36106	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
235777	chrX	49077401	49078000	+	0	NA	exon (NM_001029896, exon 4 of 11)	exon (NM_001029896, exon 4 of 11)	2187	NM_001029896	11152		NM_007075	ENSG00000196998	WDR45	JM5|NBIA4|NBIA5|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
80174	chr16	2117721	2118580	+	0	NA	exon (NM_000296, exon 5 of 46)	exon (NM_000296, exon 5 of 46)	-11397	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
99992	chr17	57739971	57740230	+	0	NA	Intergenic	Intergenic	5199	NM_001282544	101927581		NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
10129	chr1	59333721	59333980	+	0	NA	intron (NM_001350793, intron 4 of 17)	intron (NM_001350793, intron 4 of 17)	23818	NM_001350792	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
68970	chr14	91436271	91436450	+	0	NA	Intergenic	L1PA2|LINE|L1	-18540	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
175794	chr4	77805701	77805930	+	0	NA	intron (NM_001365006, intron 1 of 11)	Charlie4a|DNA|hAT-Charlie	13249	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
60288	chr13	40628121	40628780	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	38191	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
124060	chr19	55595221	55595680	+	0	NA	intron (NM_032836, intron 2 of 2)	L2b|LINE|L2	4067	NM_032836	84922		NM_032836	ENSG00000179943	FIZ1	ZNF798	FLT3 interacting zinc finger 1	protein-coding
9271	chr1	46305321	46305780	+	0	NA	intron (NM_001297566, intron 1 of 2)	AluY|SINE|Alu	1852	NM_006004	7388		NM_006004	ENSG00000173660	UQCRH	MC3DN11|QCR6|UQCR8	ubiquinol-cytochrome c reductase hinge protein	protein-coding
167613	chr3	129575571	129575830	+	0	NA	intron (NM_015103, intron 10 of 35)	intron (NM_015103, intron 10 of 35)	27315	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
25850	chr10	11233271	11233700	+	0	NA	intron (NM_001326330, intron 3 of 12)	L2|LINE|L2	68455	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
225927	chr9	40616451	40616550	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	116519	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
169484	chr3	169687071	169687230	+	0	NA	Intergenic	Intergenic	-23438	NM_001366473	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
198442	chr6	106108201	106108400	+	0	NA	3' UTR (NM_001198, exon 7 of 7)	3' UTR (NM_001198, exon 7 of 7)	9359	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
234651	chrX	20129201	20129400	+	0	NA	intron (NM_001412, intron 6 of 6)	FLAM_A|SINE|Alu	7113	NR_023358	100158262		NR_023358		SCARNA9L	-	small Cajal body-specific RNA 9 like	ncRNA
82951	chr16	21875921	21876480	+	0	NA	Intergenic	AluSz6|SINE|Alu	-9465	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
211967	chr7	112789421	112790750	+	0	NA	intron (NM_001287497, intron 1 of 5)	CpG	308	NM_022484	64418		NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
152625	chr22	21437451	21437780	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	20244	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
156178	chr22	40237221	40237880	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	59625	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
121509	chr19	47186221	47187700	+	0	NA	intron (NM_001145713, intron 6 of 6)	L2b|LINE|L2	-39982	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
120111	chr19	42182101	42182300	+	0	NA	Intergenic	AluSz6|SINE|Alu	35477	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
69351	chr14	93976101	93977030	+	0	NA	promoter-TSS (NM_001202429)	promoter-TSS (NM_001202429)	5	NM_001202429	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
60939	chr13	46332251	46333080	+	0	NA	Intergenic	HAL1|LINE|L1	-34821	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
61773	chr13	74808621	74808880	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	255907	NR_034025	338864		NR_034024	ENSG00000236678	LINC00347	-	long intergenic non-protein coding RNA 347	ncRNA
160000	chr3	18370671	18371030	+	0	NA	intron (NM_001322873, intron 9 of 10)	intron (NM_001322873, intron 9 of 10)	54489	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
29996	chr10	73759101	73760500	+	0	NA	intron (NM_198597, intron 4 of 22)	intron (NM_198597, intron 4 of 22)	-12476	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
99781	chr17	51151201	51151400	+	0	NA	Intergenic	L1MD2|LINE|L1	-2259	NM_001018136	654364		NM_001018136	ENSG00000011052	NME1-NME2	NM23-LV|NMELV	NME1-NME2 readthrough	protein-coding
234901	chrX	30994521	30994780	+	0	NA	Intergenic	AluY|SINE|Alu	77391	NM_031894	53940		NM_031894	ENSG00000132446	FTHL17	CT38	ferritin heavy chain like 17	protein-coding
81224	chr16	4529301	4529900	+	0	NA	intron (NM_001199055, intron 1 of 5)	intron (NM_001199055, intron 1 of 5)	8829	NM_001199054	29965		NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
222789	chr8	142111171	142111330	+	0	NA	Intergenic	Intergenic	-65089	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
215145	chr7	155460721	155460980	+	0	NA	intron (NM_001427, intron 1 of 1)	intron (NM_001427, intron 1 of 1)	2721	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
15271	chr1	149694301	149695430	+	0	NA	Intergenic	AluJb|SINE|Alu	-6239	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
11279	chr1	89125721	89126500	+	0	NA	promoter-TSS (NM_004120)	promoter-TSS (NM_004120)	4	NM_004120	2634		NM_004120	ENSG00000162645	GBP2	-	guanylate binding protein 2	protein-coding
213806	chr7	141012051	141012650	+	0	NA	intron (NM_053035, intron 1 of 2)	intron (NM_053035, intron 1 of 2)	2329	NM_016071	51650		NM_016071	ENSG00000090263	MRPS33	CGI-139|MRP-S33|PTD003|S33mt|mS33	mitochondrial ribosomal protein S33	protein-coding
34574	chr10	133234671	133234830	+	0	NA	Intergenic	Intergenic	-3105	NM_014468	27287		NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
144402	chr20	35273951	35274050	+	0	NA	intron (NM_001355008, intron 1 of 14)	intron (NM_001355008, intron 1 of 14)	4122	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
100878	chr17	64348071	64349000	+	0	NA	intron (NM_000442, intron 12 of 15)	AluSz|SINE|Alu	42325	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
10097	chr1	58941351	58942290	+	0	NA	Intergenic	Intergenic	-78656	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
46074	chr11	122781051	122781730	+	0	NA	intron (NM_032873, intron 4 of 13)	intron (NM_032873, intron 4 of 13)	-57110	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
213587	chr7	139380251	139380550	+	0	NA	intron (NM_016019, intron 2 of 9)	AluSx1|SINE|Alu	20506	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
97430	chr17	43529071	43529230	+	0	NA	exon (NM_001261439, exon 4 of 5)	exon (NM_001261439, exon 4 of 5)	1285	NM_001261439	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
20839	chr1	201648571	201648730	+	0	NA	5' UTR (NM_020443, exon 1 of 30)	5' UTR (NM_020443, exon 1 of 30)	328	NM_020443	89796		NM_020443	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
69896	chr14	99436271	99437450	+	0	NA	intron (NM_032233, intron 6 of 12)	intron (NM_032233, intron 6 of 12)	43999	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
207853	chr7	50355251	50355450	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	36302	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
18251	chr1	161059151	161059600	+	0	NA	intron (NM_001025598, intron 2 of 11)	(GT)n|Simple_repeat|Simple_repeat	10516	NM_181720	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
70799	chr14	103538121	103538630	+	0	NA	Intergenic	Intergenic	9179	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
171535	chr3	196738701	196738900	+	0	NA	Intergenic	L2a|LINE|L2	-1057	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
150629	chr21	43386751	43386850	+	0	NA	Intergenic	Intergenic	-24451	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
181140	chr5	38376421	38376680	+	0	NA	intron (NM_001205301, intron 6 of 22)	L2a|LINE|L2	26921	NR_102749	100506475		NR_102749	ENSG00000248572	EGFLAM-AS2	-	EGFLAM antisense RNA 2	ncRNA
144174	chr20	34086871	34087230	+	0	NA	Intergenic	Intergenic	25193	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
110936	chr19	2821151	2821250	+	0	NA	intron (NM_001102651, intron 1 of 4)	AluSx|SINE|Alu	1332	NM_001102651	115196		NM_152303	ENSG00000172006	ZNF554	-	zinc finger protein 554	protein-coding
28870	chr10	62693401	62693700	+	0	NA	Intergenic	MIRb|SINE|MIR	-111170	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
54785	chr12	94206871	94207030	+	0	NA	intron (NM_005761, intron 4 of 30)	intron (NM_005761, intron 4 of 30)	-55669	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
47484	chr12	3934751	3935450	+	0	NA	Intergenic	L1MB1|LINE|L1	-61652	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
74115	chr15	55064451	55064550	+	0	NA	intron (NR_135679, intron 1 of 1)	L1PA2|LINE|L1	7753	NR_135679	105370829		NR_135679	ENSG00000260937	LOC105370829	-	uncharacterized LOC105370829	ncRNA
173429	chr4	8206001	8206500	+	0	NA	intron (NR_134639, intron 2 of 14)	intron (NR_134639, intron 2 of 14)	6960	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
92543	chr17	8948371	8948880	+	0	NA	intron (NM_001142633, intron 1 of 18)	L1M5|LINE|L1	17082	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
203331	chr6	170219971	170220130	+	0	NA	Intergenic	CpG	42519	NR_002787	154449		NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
232532	chr9	136334801	136335280	+	0	NA	intron (NM_015597, intron 2 of 8)	intron (NM_015597, intron 2 of 8)	7501	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
73204	chr15	41548621	41549060	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4583	NM_015540	26015		NM_015540	ENSG00000103932	RPAP1	-	RNA polymerase II associated protein 1	protein-coding
65950	chr14	55731921	55732180	+	0	NA	Intergenic	Charlie7a|DNA|hAT-Charlie	-34195	NR_004844	645683		NR_004844	ENSG00000293056	RPL13AP3	RPL13A_11_1370	ribosomal protein L13a pseudogene 3	pseudo
6139	chr1	27374221	27374680	+	0	NA	exon (NM_003665, exon 2 of 8)	exon (NM_003665, exon 2 of 8)	374	NM_003665	8547		NM_003665	ENSG00000142748	FCN3	FCNH|HAKA1	ficolin 3	protein-coding
138350	chr2	203914671	203915280	+	0	NA	Intergenic	Intergenic	-21788	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123550	chr19	54377951	54379130	+	0	NA	Intergenic	L1MEg|LINE|L1	-7984	NM_001289026	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
203004	chr6	163405851	163406650	+	0	NA	Intergenic	Intergenic	7700	NR_037593	100526820		NR_037593	ENSG00000270419	CAHM	LINC00468	colon adenocarcinoma hypermethylated	ncRNA
172187	chr4	1241671	1242150	+	0	NA	intron (NM_001377192, intron 1 of 9)	intron (NM_001377192, intron 1 of 9)	6818	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
234378	chrX	15815821	15816400	+	0	NA	intron (NM_005089, intron 8 of 10)	intron (NM_005089, intron 8 of 10)	25626	NM_005089	8233		NM_005089	ENSG00000169249	ZRSR2	U2AF1-RS2|U2AF1L2|U2AF1RS2|URP|ZC3H22	zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2	protein-coding
220785	chr8	102599871	102600030	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	48361	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
14997	chr1	148146091	148146600	+	0	NA	intron (NM_001385469, intron 1 of 23)	CpG	5936	NM_001101663	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
149878	chr21	35697401	35697600	+	0	NA	Intergenic	Intergenic	-23215	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
125242	chr2	10398601	10399750	+	0	NA	intron (NM_001258358, intron 2 of 4)	intron (NM_001258358, intron 2 of 4)	30411	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
1441	chr1	2638901	2639600	+	0	NA	Intergenic	Intergenic	-6234	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
96808	chr17	41921301	41922500	+	0	NA	Intergenic	AluJr|SINE|Alu	-2878	NM_001303274	47		NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
190304	chr5	179600501	179600900	+	0	NA	intron (NR_110560, intron 3 of 8).2	AluSx|SINE|Alu	3041	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
55627	chr12	107030421	107031750	+	0	NA	intron (NM_004075, intron 1 of 12)	intron (NM_004075, intron 1 of 12)	-43919	NM_025198	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
190031	chr5	177507121	177507680	+	0	NA	intron (NM_001144876, intron 2 of 4)	L1MB5|LINE|L1	2426	NM_001384137	79930		NM_024872	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
141843	chr20	481171	481750	+	0	NA	3' UTR (NM_001895, exon 13 of 13)	3' UTR (NM_001895, exon 13 of 13)	-18927	NM_144628	128637		NM_144628	ENSG00000125875	TBC1D20	C20orf140|WARBM4	TBC1 domain family member 20	protein-coding
35265	chr11	866621	866880	+	0	NA	3' UTR (NM_001025239, exon 8 of 8)	3' UTR (NM_001025239, exon 8 of 8)	22304	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
233209	chr9	137224821	137225680	+	0	NA	promoter-TSS (NM_199001)	promoter-TSS (NM_199001)	76	NM_199001	375791		NM_199001	ENSG00000197191	CYSRT1	C9orf169	cysteine rich tail 1	protein-coding
103207	chr17	77474901	77475730	+	0	NA	promoter-TSS (NM_001113495)	promoter-TSS (NM_001113495)	-320	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
5944	chr1	26885751	26886130	+	0	NA	intron (NM_018066, intron 3 of 4)	intron (NM_018066, intron 3 of 4)	4343	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
19505	chr1	175191451	175192200	+	0	NA	intron (NM_001162894, intron 1 of 3)	intron (NM_001162894, intron 1 of 3)	951	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
96101	chr17	39625571	39625730	+	0	NA	Intergenic	Intergenic	-1302	NM_032192	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
21143	chr1	203671401	203672950	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	44238	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
41670	chr11	66595201	66596280	+	0	NA	intron (NM_005125, intron 2 of 7)	intron (NM_005125, intron 2 of 7)	2555	NM_005125	9973		NM_005125	ENSG00000173992	CCS	-	copper chaperone for superoxide dismutase	protein-coding
35290	chr11	970071	971080	+	0	NA	intron (NR_144509, intron 3 of 20)	intron (NR_144509, intron 3 of 20)	44705	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
81712	chr16	11253201	11254200	+	0	NA	TTS (NM_003745)	TTS (NM_003745)	2482	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
177089	chr4	108065371	108065530	+	0	NA	intron (NM_016269, intron 9 of 11)	AluSg|SINE|Alu	60786	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
58954	chr13	19784071	19784230	+	0	NA	Intergenic	L1ME1|LINE|L1	-1114	NR_149053	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
201476	chr6	148771301	148771500	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	24370	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
204155	chr7	2399671	2400630	+	0	NA	Intergenic	Intergenic	-3461	NM_001243795	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
206325	chr7	30296571	30296930	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-6860	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
189728	chr5	176542901	176544380	+	0	NA	intron (NM_001171976, intron 1 of 31)	CpG	1129	NM_001171976	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
74534	chr15	60487401	60487600	+	0	NA	TTS (NM_002943)	TTS (NM_002943)	8322	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
49124	chr12	14845271	14845730	+	0	NA	Intergenic	Intergenic	-1974	NM_021071	420		NM_021071	ENSG00000111339	ART4	ARTC4|CD297|DO|DO/ART4|DOK1	ADP-ribosyltransferase 4 (inactive) (Dombrock blood group)	protein-coding
203496	chr7	600471	600630	+	0	NA	intron (NM_001164759, intron 6 of 10)	intron (NM_001164759, intron 6 of 10)	-2295	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
168352	chr3	141885271	141885430	+	0	NA	intron (NM_001679, intron 1 of 6)	L4_B_Mam|LINE|RTE-X	8707	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
18948	chr1	168530801	168531000	+	0	NA	Intergenic	Intergenic	13097	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
60106	chr13	37000001	37001780	+	0	NA	intron (NM_181503, intron 1 of 10)	CpG	104	NM_181503	11340		NM_181503	ENSG00000120699	EXOSC8	CIP3|EAP2|OIP2|PCH1C|RRP43|Rrp43p|bA421P11.3|p9	exosome component 8	protein-coding
183018	chr5	73083171	73083400	+	0	NA	intron (NM_138782, intron 24 of 25)	intron (NM_138782, intron 24 of 25)	-37290	NM_173490	134285		NM_173490	ENSG00000157111	TMEM171	PRP2	transmembrane protein 171	protein-coding
141221	chr2	239397971	239398130	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	2970	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
101424	chr17	67401421	67401880	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSg7|SINE|Alu	24369	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
151220	chr21	45234251	45234430	+	0	NA	promoter-TSS (NR_135279)	promoter-TSS (NR_135279)	0	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
23570	chr1	229434671	229435330	+	0	NA	promoter-TSS (NM_001100)	promoter-TSS (NM_001100)	-906	NM_001100	58		NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|CMYP2A|CMYP2B|CMYP2C|MPFD|NEM1|NEM2|NEM3|SHPM	actin alpha 1, skeletal muscle	protein-coding
238423	chrX	150694721	150695600	+	0	NA	intron (NR_148676, intron 1 of 16)	L2a|LINE|L2	1764	NM_001306144	8776		NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
22784	chr1	224425901	224426300	+	0	NA	intron (NM_001115113, intron 3 of 13)	AluSx1|SINE|Alu	-8540	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
227948	chr9	94668821	94669830	+	0	NA	Intergenic	MER61F|LTR|ERV1	-29062	NM_001127628	2203		NM_000507	ENSG00000165140	FBP1	FBP	fructose-bisphosphatase 1	protein-coding
37688	chr11	27705871	27706030	+	0	NA	intron (NM_170731, intron 1 of 1)	intron (NM_170731, intron 1 of 1)	-4317	NM_170733	627		NM_001709	ENSG00000176697	BDNF	ANON2|BULN2	brain derived neurotrophic factor	protein-coding
218471	chr8	49911651	49911750	+	0	NA	non-coding (NR_135797, exon 1 of 21)	non-coding (NR_135797, exon 1 of 21)	293	NM_018967	54212		NM_018967	ENSG00000147481	SNTG1	G1SYN|SYN4	syntrophin gamma 1	protein-coding
185350	chr5	127027401	127028030	+	0	NA	intron (NM_178450, intron 1 of 4)	intron (NM_178450, intron 1 of 4)	2843	NM_178450	115123		NM_178450	ENSG00000173926	MARCHF3	MARCH-III|MARCH3|RNF173	membrane associated ring-CH-type finger 3	protein-coding
194039	chr6	31843751	31844050	+	0	NA	Intergenic	AluY|SINE|Alu	6824	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
40916	chr11	65210571	65210930	+	0	NA	intron (NM_001198868, intron 20 of 21)	intron (NM_001198868, intron 20 of 21)	-3090	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
171652	chr3	197656451	197656550	+	0	NA	Intergenic	Intergenic	18076	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
127198	chr2	38546271	38546430	+	0	NA	Intergenic	AluJr|SINE|Alu	-30610	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
179191	chr4	173328071	173328230	+	0	NA	Intergenic	AluSx1|SINE|Alu	5619	NM_001130689	3148		NM_002129	ENSG00000164104	HMGB2	HMG2	high mobility group box 2	protein-coding
45860	chr11	119624151	119624400	+	0	NA	Intergenic	Intergenic	104925	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
144620	chr20	35876871	35877500	+	0	NA	intron (NM_016436, intron 9 of 17)	AluSx1|SINE|Alu	77317	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
18771	chr1	167509851	167510030	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	8589	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
105746	chr18	2748401	2748600	+	0	NA	intron (NM_015295, intron 30 of 47)	AluSx|SINE|Alu	92774	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
56686	chr12	120016451	120016950	+	0	NA	intron (NR_147894, intron 3 of 8)	AluJo|SINE|Alu	26856	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
175288	chr4	67558421	67558880	+	0	NA	promoter-TSS (NM_001317769)	promoter-TSS (NM_001317769)	-77	NM_012108	26228		NM_012108	ENSG00000035720	STAP1	BRDG1|STAP-1	signal transducing adaptor family member 1	protein-coding
232905	chr9	136856751	136857230	+	0	NA	exon (NM_206920, exon 16 of 27)	exon (NM_206920, exon 16 of 27)	4644	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
13638	chr1	116479871	116480030	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-1124	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
178203	chr4	142496971	142497150	+	0	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	-21314	NM_001385334	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
163981	chr3	53072351	53074150	+	0	NA	Intergenic	Intergenic	-27177	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
171902	chr4	823351	823800	+	0	NA	intron (NM_006651, intron 2 of 3)	intron (NM_006651, intron 2 of 3)	2554	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
41409	chr11	66043351	66044200	+	0	NA	intron (NM_033036, intron 2 of 2)	intron (NM_033036, intron 2 of 2)	5386	NM_033036	89792		NM_033036	ENSG00000175229	GAL3ST3	GAL3ST-3|GAL3ST2	galactose-3-O-sulfotransferase 3	protein-coding
45401	chr11	118341251	118341350	+	0	NA	intron (NM_001040651, intron 1 of 3)	intron (NM_001040651, intron 1 of 3)	1405	NM_000732	915		NM_000732	ENSG00000167286	CD3D	CD3-DELTA|CD3DELTA|IMD19|T3D	CD3 delta subunit of T-cell receptor complex	protein-coding
45895	chr11	120302871	120303300	+	0	NA	intron (NM_001244682, intron 6 of 12)	intron (NM_001244682, intron 6 of 12)	-22214	NM_001198674	219902		NM_174926	ENSG00000181264	TLCD5	TMEM136	TLC domain containing 5	protein-coding
187625	chr5	142982921	142983380	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-114240	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
118255	chr19	35253601	35254280	+	0	NA	intron (NM_001260490, intron 2 of 6)	intron (NM_001260490, intron 2 of 6)	4938	NM_001385215	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
237732	chrX	127122251	127122350	+	0	NA	Intergenic	L1PA2|LINE|L1	302571	NM_001122716	100130613		NM_001122716	ENSG00000183631	PRR32	CXorf64	proline rich 32	protein-coding
87059	chr16	68348651	68348950	+	0	NA	intron (NR_165372, intron 14 of 19)	AluJb|SINE|Alu	37686	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
154621	chr22	36310971	36311330	+	0	NA	intron (NM_002473, intron 14 of 40)	intron (NM_002473, intron 14 of 40)	-24243	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
203837	chr7	1432221	1433080	+	0	NA	Intergenic	Intergenic	26820	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
115482	chr19	15368251	15368630	+	0	NA	intron (NM_005858, intron 8 of 13)	intron (NM_005858, intron 8 of 13)	11347	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
133839	chr2	128179151	128179450	+	0	NA	intron (NM_020120, intron 34 of 40)	intron (NM_020120, intron 34 of 40)	88100	NR_027671	56886		NM_020120	ENSG00000136731	UGGT1	HUGT1|UGCGL1|UGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding
44016	chr11	94928571	94928730	+	0	NA	Intergenic	Intergenic	44906	NM_016403	51503		NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
232655	chr9	136481961	136484500	+	0	NA	promoter-TSS (NM_014866)	promoter-TSS (NM_014866)	-190	NM_014866	9919		NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding
39146	chr11	53731951	53732050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	871998	NM_001004703	119749		NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
227660	chr9	92974101	92974300	+	0	NA	promoter-TSS (NM_033086)	promoter-TSS (NM_033086)	-236	NM_033086	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
198711	chr6	108164851	108165230	+	0	NA	promoter-TSS (NM_003269)	promoter-TSS (NM_003269)	-982	NM_003269	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
25418	chr10	6562671	6563600	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	17141	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
36516	chr11	6438901	6439550	+	0	NA	intron (NM_000613, intron 4 of 9)	L2c|LINE|L2	1762	NM_000613	3263		NM_000613	ENSG00000110169	HPX	HX	hemopexin	protein-coding
76889	chr15	77986721	77987380	+	0	NA	Intergenic	Intergenic	7175	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
90378	chr17	1264851	1265400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5319	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
124119	chr19	55666751	55667380	+	0	NA	intron (NM_007279, intron 7 of 11)	intron (NM_007279, intron 7 of 11)	-8130	NM_001321263	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
131447	chr2	96323401	96323800	+	0	NA	Intergenic	AluSz|SINE|Alu	-1717	NM_001008949	150771		NM_178495	ENSG00000198885	ITPRIPL1	D1B|KIAA1754L	ITPRIP like 1	protein-coding
201449	chr6	148251451	148251550	+	0	NA	Intergenic	Intergenic	-20828	NM_001346505	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
127166	chr2	38184901	38185300	+	0	NA	Intergenic	Intergenic	53995	NR_027252	285154		NM_173652	ENSG00000232973	CYP1B1-AS1	C2orf58	CYP1B1 antisense RNA 1	ncRNA
133765	chr2	127641251	127641500	+	0	NA	intron (NM_001136037, intron 7 of 10)	intron (NM_001136037, intron 7 of 10)	-4489	NM_001161415	2840		NM_005291	ENSG00000144230	GPR17	-	G protein-coupled receptor 17	protein-coding
77523	chr15	84700251	84700980	+	0	NA	intron (NM_001271920, intron 1 of 6)	AluSg|SINE|Alu	15524	NM_014300	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
210028	chr7	94012021	94012280	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7795	NM_001317739	10282		NM_005868	ENSG00000105829	BET1	HBET1|MDRP	Bet1 golgi vesicular membrane trafficking protein	protein-coding
100907	chr17	64442121	64443330	+	0	NA	Intergenic	Intergenic	-6390	NM_001085423	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
98644	chr17	47817801	47818200	+	0	NA	intron (NM_145798, intron 7 of 22)	intron (NM_145798, intron 7 of 22)	3794	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
230909	chr9	129260801	129261000	+	0	NA	Intergenic	Intergenic	-21516	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
137051	chr2	190886601	190886800	+	0	NA	intron (NM_014905, intron 1 of 17)	AluSx1|SINE|Alu	5879	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
227589	chr9	92440321	92441180	+	0	NA	intron (NM_001286969, intron 4 of 6)	MER44C|DNA|TcMar-Tigger	-16196	NM_005014	4958		NM_005014	ENSG00000127083	OMD	OSAD|SLRR2C	osteomodulin	protein-coding
11759	chr1	92317671	92318380	+	0	NA	intron (NM_024813, intron 6 of 12)	intron (NM_024813, intron 6 of 12)	18966	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
15751	chr1	151143901	151144250	+	0	NA	intron (NM_001178061, intron 2 of 19)	intron (NM_001178061, intron 2 of 19)	2556	NM_030913	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
83287	chr16	24070921	24071450	+	0	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	-131931	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
191781	chr6	14129321	14130200	+	0	NA	intron (NM_001040280, intron 2 of 4)	intron (NM_001040280, intron 2 of 4)	11988	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
161561	chr3	42747451	42748150	+	0	NA	intron (NM_144719, intron 5 of 15)	intron (NM_144719, intron 5 of 15)	15225	NR_046732	100874114		NR_046732	ENSG00000173811	CCDC13-AS1	-	CCDC13 antisense RNA 1	ncRNA
71057	chr14	104804501	104804900	+	0	NA	TTS (NM_001137601)	TTS (NM_001137601)	3599	NM_001137601	100128927		NM_001137601	ENSG00000179627	ZBTB42	LCCS6|ZNF925	zinc finger and BTB domain containing 42	protein-coding
61253	chr13	50052321	50053080	+	0	NA	intron (NR_152566, intron 5 of 13)	Tigger2|DNA|TcMar-Tigger	-3499	NR_029485	406948		NR_029485	ENSG00000283785	MIR15A	MIRN15A|hsa-mir-15a|miRNA15A|mir-15a	microRNA 15a	ncRNA
230659	chr9	128704301	128704530	+	0	NA	intron (NM_001317926, intron 1 of 21)	intron (NM_001317926, intron 1 of 21)	1912	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
100657	chr17	63704951	63705050	+	0	NA	intron (NM_001165970, intron 8 of 10)	intron (NM_001165970, intron 8 of 10)	4662	NR_046273	729683		NR_046273		LOC729683	-	uncharacterized LOC729683	ncRNA
23621	chr1	230231371	230231730	+	0	NA	intron (NM_001291866, intron 3 of 15)	intron (NM_001291866, intron 3 of 15)	164312	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
203468	chr7	494471	494630	+	0	NA	Intergenic	Intergenic	25294	NM_002607	5154		NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
164289	chr3	57592751	57593300	+	0	NA	intron (NM_001660, intron 1 of 5)	AluJr4|SINE|Alu	4319	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
221035	chr8	116709021	116709930	+	0	NA	intron (NM_003756, intron 2 of 7)	intron (NM_003756, intron 2 of 7)	46348	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
57382	chr12	121808721	121809200	+	0	NA	intron (NM_001353345, intron 5 of 16)	AluSz|SINE|Alu	4951	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
82248	chr16	15073201	15073400	+	0	NA	intron (NM_018427, intron 11 of 17)	AluJb|SINE|Alu	-17221	NM_001270766	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
147459	chr20	59017771	59017930	+	0	NA	Intergenic	L2b|LINE|L2	-1579	NM_030773	81027		NM_030773	ENSG00000101162	TUBB1	MACTHC1	tubulin beta 1 class VI	protein-coding
38790	chr11	47236071	47236230	+	0	NA	intron (NM_000107, intron 7 of 9)	AluJo|SINE|Alu	-12150	NM_001251935	10062		NM_005693	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	nuclear receptor subfamily 1 group H member 3	protein-coding
130002	chr2	74146921	74148430	+	0	NA	promoter-TSS (NR_045637)	promoter-TSS (NR_045637)	237	NM_001035505	388962		NM_212552	ENSG00000163170	BOLA3	MMDS2	bolA family member 3	protein-coding
93934	chr17	21306221	21306480	+	0	NA	intron (NM_145109, intron 9 of 11)	MER21C|LTR|ERVL	18314	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
10327	chr1	64897251	64897630	+	0	NA	intron (NM_001321852, intron 1 of 24)	AluSz|SINE|Alu	69109	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
162514	chr3	48587021	48587530	+	0	NA	exon (NM_000094, exon 24 of 119)	exon (NM_000094, exon 24 of 119)	8054	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
114756	chr19	13506051	13506530	+	0	NA	5' UTR (NM_001174080, exon 1 of 47)	5' UTR (NM_001174080, exon 1 of 47)	189	NM_000068	773		NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|DEE42|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6	calcium voltage-gated channel subunit alpha1 A	protein-coding
113236	chr19	8485271	8486330	+	0	NA	exon (NM_001297418, exon 12 of 14)	exon (NM_001297418, exon 12 of 14)	16840	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
228152	chr9	96924971	96925130	+	0	NA	Intergenic	CpG	-3793	NM_001170741	441457		NM_001024597	ENSG00000188152	NUTM2G	FAM22G|NUTMG	NUT family member 2G	protein-coding
202151	chr6	155177401	155177900	+	0	NA	intron (NM_001384547, intron 9 of 25)	intron (NM_001384547, intron 9 of 25)	-39316	NM_001010927	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
176890	chr4	102787351	102788030	+	0	NA	intron (NR_125932, intron 4 of 4)	Tigger7|DNA|TcMar-Tigger	10653	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
149907	chr21	36134071	36137000	+	0	NA	intron (NM_001236, intron 1 of 2)	CpG	456	NM_001236	874		NM_001236	ENSG00000159231	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
211355	chr7	104956851	104957930	+	0	NA	Intergenic	Intergenic	-30745	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
43980	chr11	94128501	94130100	+	0	NA	5' UTR (NM_015368, exon 1 of 5)	5' UTR (NM_015368, exon 1 of 5)	459	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
194333	chr6	32850901	32851330	+	0	NA	exon (NM_000593, exon 4 of 11)	exon (NM_000593, exon 4 of 11)	1646	NM_001292022	6890		NM_000593	ENSG00000168394	TAP1	ABC17|ABCB2|APT1|D6S114E|PSF-1|PSF1|RING4|TAP1*0102N|TAP1N	transporter 1, ATP binding cassette subfamily B member	protein-coding
31822	chr10	99429021	99429380	+	0	NA	intron (NM_002079, intron 1 of 8)	AluSc8|SINE|Alu	1424	NM_002079	2805		NM_002079	ENSG00000120053	GOT1	AST|AST1|ASTQTL1|GIG18|SGOT|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1	protein-coding
38765	chr11	47163671	47163980	+	0	NA	TTS (NM_001242832)	TTS (NM_001242832)	13054	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
31993	chr10	100895321	100895780	+	0	NA	Intergenic	Intergenic	-17413	NM_018121	55719		NM_018121	ENSG00000119906	SLF2	ATELS1|C10orf6|FAM178A	SMC5-SMC6 complex localization factor 2	protein-coding
159528	chr3	14430221	14430680	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	27844	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
52729	chr12	56608471	56609230	+	0	NA	intron (NM_001351156, intron 12 of 30)	AluSp|SINE|Alu	21476	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
90667	chr17	1706771	1707630	+	0	NA	3' UTR (NM_001164407, exon 4 of 4)	3' UTR (NM_001164407, exon 4 of 4)	3177	NM_001164407	727910		NM_001164407	ENSG00000185561	TLCD2	-	TLC domain containing 2	protein-coding
156062	chr22	39993751	39994460	+	0	NA	promoter-TSS (NM_138435)	promoter-TSS (NM_138435)	-849	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
57518	chr12	122124251	122124430	+	0	NA	intron (NM_014938, intron 1 of 16)	CpG	-43379	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
186232	chr5	134398801	134399000	+	0	NA	Intergenic	FAM|SINE|Alu	12981	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
126401	chr2	27635921	27636180	+	0	NA	intron (NR_026735, intron 5 of 11)	AluJb|SINE|Alu	7000	NM_007266	11321		NM_007266	ENSG00000198522	GPN1	ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1	GPN-loop GTPase 1	protein-coding
6102	chr1	27325001	27325480	+	0	NA	non-coding (NR_033926, exon 1 of 1)	non-coding (NR_033926, exon 1 of 1)	1366	NR_033926	644961		NR_033926		ACTG1P20	-	actin gamma 1 pseudogene 20	pseudo
116454	chr19	18060551	18060900	+	0	NA	intron (NM_005535, intron 15 of 16)	MLT1K|LTR|ERVL-MaLR	26209	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
149657	chr21	33554621	33555280	+	0	NA	non-coding (NR_103797, exon 3 of 13)	non-coding (NR_103797, exon 3 of 13)	4288	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
62504	chr13	99436471	99437480	+	0	NA	Intergenic	Intergenic	62331	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
77901	chr15	89167471	89167830	+	0	NA	intron (NM_152924, intron 5 of 10)	intron (NM_152924, intron 5 of 10)	53929	NM_000326	6017		NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
155378	chr22	38305651	38306880	+	0	NA	intron (NM_152221, intron 2 of 10)	intron (NM_152221, intron 2 of 10)	11168	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
93047	chr17	17387571	17387730	+	0	NA	Intergenic	Intergenic	84277	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
34735	chr10	133688201	133688730	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-61670	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
233036	chr9	137043021	137043500	+	0	NA	intron (NM_015392, intron 1 of 8)	intron (NM_015392, intron 1 of 8)	2917	NM_015392	56654		NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
149582	chr21	33258671	33259030	+	0	NA	intron (NM_001289128, intron 7 of 7)	L2a|LINE|L2	7410	NR_038974	100288432		NR_038974		IL10RB-DT	IFNAR2-AS1|IL10RB-AS1	IL10RB divergent transcript	ncRNA
222438	chr8	134886121	134886750	+	0	NA	Intergenic	Intergenic	36500	NR_125427	101927845		NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
216870	chr8	22627671	22628350	+	0	NA	intron (NR_156436, intron 6 of 9)	intron (NR_156436, intron 6 of 9)	14199	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
189357	chr5	172443571	172443730	+	0	NA	intron (NM_001308175, intron 1 of 12)	L2c|LINE|L2	10873	NM_001308175	285590		NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
218556	chr8	54125101	54125300	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-10041	NM_014175	29088		NM_014175	ENSG00000137547	MRPL15	HSPC145|L15mt|MRP-L15|MRP-L7|RPML7|uL15m	mitochondrial ribosomal protein L15	protein-coding
77372	chr15	82829271	82829700	+	0	NA	intron (NM_001080435, intron 8 of 9)	intron (NM_001080435, intron 8 of 9)	19857	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
210202	chr7	99036951	99037050	+	0	NA	TTS (NR_110102)	TTS (NR_110102)	23835	NR_110102	101927550		NR_110102		LOC101927550	-	uncharacterized LOC101927550	ncRNA
117475	chr19	19755251	19755830	+	0	NA	TTS (NR_026956)	TTS (NR_026956)	20873	NR_026956	284440		NM_182576		LINC00663	-	long intergenic non-protein coding RNA 663	ncRNA
216345	chr8	16670401	16670690	+	0	NA	Intergenic	L1PA2|LINE|L1	331800	NM_019851	26281		NM_019851	ENSG00000078579	FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
120564	chr19	44986521	44987800	+	0	NA	intron (NM_001282175, intron 7 of 13)	intron (NM_001282175, intron 7 of 13)	-14304	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
15609	chr1	150610321	150610580	+	0	NA	Intergenic	AluSx1|SINE|Alu	18683	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
11601	chr1	91680621	91680880	+	0	NA	non-coding (NR_036634, exon 18 of 18)	non-coding (NR_036634, exon 18 of 18)	179642	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
4367	chr1	20719201	20719700	+	0	NA	TTS (NM_001103161)	TTS (NM_001103161)	-1443	NM_001122819	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
25385	chr10	6493371	6494200	+	0	NA	intron (NM_001282644, intron 7 of 17)	MIR3|SINE|MIR	86491	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
127007	chr2	36875271	36875430	+	0	NA	intron (NM_003162, intron 10 of 17)	AluJr|SINE|Alu	91186	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
164504	chr3	61894951	61895550	+	0	NA	intron (NM_001375471, intron 2 of 28)	intron (NM_001375471, intron 2 of 28)	333679	NM_002841	5793		NM_002841	ENSG00000144724	PTPRG	HPTPG|PTPG|R-PTP-GAMMA|RPTPG	protein tyrosine phosphatase receptor type G	protein-coding
111444	chr19	3810651	3811480	+	0	NA	intron (NM_015174, intron 15 of 18)	CpG	-9266	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
217251	chr8	27306201	27306600	+	0	NA	intron (NM_171982, intron 1 of 5)	AluSx4|SINE|Alu	4872	NM_001362813	23087		NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
136457	chr2	176997271	176997750	+	0	NA	Intergenic	Intergenic	214901	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
227204	chr9	88304151	88304450	+	0	NA	Intergenic	MER21-int|LTR|ERVL	-84144	NM_006717	10927		NM_006717	ENSG00000106723	SPIN1	SPIN|TDRD24	spindlin 1	protein-coding
142741	chr20	10428051	10428500	+	0	NA	intron (NM_170784, intron 1 of 5)	intron (NM_170784, intron 1 of 5)	3650	NM_018848	8195		NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	MKKS centrosomal shuttling protein	protein-coding
206459	chr7	32903871	32904030	+	0	NA	Intergenic	Intergenic	-12190	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
196538	chr6	44002301	44003580	+	0	NA	non-coding (NR_160954, exon 4 of 4)	non-coding (NR_160954, exon 4 of 4)	710	NR_125865	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
63390	chr13	114064001	114064550	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	13680	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171806	chr4	579701	579900	+	0	NA	intron (NR_148199, intron 2 of 2)	intron (NR_148199, intron 2 of 2)	2632	NR_148199	105374338		NR_148199	ENSG00000283183	LOC105374338	-	uncharacterized LOC105374338	ncRNA
130228	chr2	84819851	84820350	+	0	NA	TTS (NM_001370)	TTS (NM_001370)	60984	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
100582	chr17	63420051	63420700	+	0	NA	exon (NM_025185, exon 26 of 26)	exon (NM_025185, exon 26 of 26)	19892	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
224365	chr9	7657951	7658050	+	0	NA	Intergenic	Intergenic	141778	NM_033428	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
117562	chr19	21141751	21142550	+	0	NA	non-coding (NR_138053, exon 1 of 6)	non-coding (NR_138053, exon 1 of 6)	110	NM_001319124	170959		NM_133473	ENSG00000196705	ZNF431	ZFP932	zinc finger protein 431	protein-coding
85336	chr16	50155451	50156180	+	0	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	2509	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
182273	chr5	57209321	57209900	+	0	NA	intron (NM_001331037, intron 2 of 12)	L1MB5|LINE|L1	-4464	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
56879	chr12	120296671	120297450	+	0	NA	intron (NM_001385735, intron 1 of 3)	AluSg4|SINE|Alu	-3823	NR_003925	26835		NR_003925	ENSG00000200795	RNU4-1	RNU4A|RNU4B2|U4|U4BL	RNA, U4 small nuclear 1	snRNA
115726	chr19	16251671	16251830	+	0	NA	Intergenic	Intergenic	53839	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
126293	chr2	27210471	27210630	+	0	NA	intron (NR_028323, intron 2 of 16)	AluSx4|SINE|Alu	1718	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
49272	chr12	19528621	19529030	+	0	NA	Intergenic	Intergenic	88226	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
98145	chr17	46024071	46024230	+	0	NA	exon (NM_001203251, exon 10 of 10)	exon (NM_001203251, exon 10 of 10)	24900	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
121766	chr19	47762051	47762950	+	0	NA	intron (NR_132382, intron 2 of 2)	AluJr|SINE|Alu	6340	NR_132382	106144593		NR_132382	ENSG00000269656	NOP53-AS1	GLTSCR2-AS1	NOP53 antisense RNA 1	ncRNA
170139	chr3	183425751	183426250	+	0	NA	intron (NM_015078, intron 1 of 29)	MIRc|SINE|MIR	2269	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
86563	chr16	67202421	67202800	+	0	NA	promoter-TSS (NR_029887)	promoter-TSS (NR_029887)	-215	NR_029887	442901		NR_029887	ENSG00000207948	MIR328	MIRN328|hsa-mir-328|mir-328	microRNA 328	ncRNA
184577	chr5	102836571	102837030	+	0	NA	intron (NM_001364582, intron 1 of 24)	L2a|LINE|L2	28602	NM_001364582	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
173967	chr4	26061301	26061530	+	0	NA	Intergenic	MIRc|SINE|MIR	-102043	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
92088	chr17	7559901	7560620	+	0	NA	intron (NM_172087, intron 3 of 4)	intron (NM_172087, intron 3 of 4)	-1659	NM_015670	26168		NM_015670	ENSG00000161956	SENP3	SMT3IP1|SSP3|Ulp1	SUMO specific peptidase 3	protein-coding
63365	chr13	114043321	114044650	+	0	NA	intron (NM_001320822, intron 3 of 23).2	CpG	33970	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
27757	chr10	35216351	35217080	+	0	NA	Intergenic	Intergenic	20813	NM_182724	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
229452	chr9	121634501	121634700	+	0	NA	intron (NM_032552, intron 1 of 16)	intron (NM_032552, intron 1 of 16)	67498	NM_032552	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
122109	chr19	48784521	48784780	+	0	NA	Intergenic	MIR|SINE|MIR	26379	NM_001284325	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
191063	chr6	3354371	3354730	+	0	NA	intron (NM_001382320, intron 1 of 1)	intron (NM_001382320, intron 1 of 1)	-30400	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
197181	chr6	63570271	63570630	+	0	NA	intron (NM_001385259, intron 1 of 5)	intron (NM_001385259, intron 1 of 5)	-1349	NM_001385260	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
152740	chr22	21695201	21695400	+	0	NA	intron (NM_148176, intron 19 of 20)	intron (NM_148176, intron 19 of 20)	29288	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
70547	chr14	102527501	102528580	+	0	NA	Intergenic	Intergenic	-11604	NR_036192	100422954		NR_036192	ENSG00000266015	MIR4309	-	microRNA 4309	ncRNA
79658	chr16	1197371	1198130	+	0	NA	intron (NM_021098, intron 5 of 34)	intron (NM_021098, intron 5 of 34)	27518	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
40846	chr11	65040741	65042450	+	0	NA	exon (NM_013299, exon 1 of 2)	exon (NM_013299, exon 1 of 2)	385	NM_013299	29901		NM_013299	ENSG00000168061	SAC3D1	HSU79266|SHD1	SAC3 domain containing 1	protein-coding
176642	chr4	99915401	99915800	+	0	NA	intron (NM_001031723, intron 3 of 7)	L1MD1|LINE|L1	-21054	NR_024170	8649		NM_021970	ENSG00000109270	LAMTOR3	MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding
147325	chr20	57907651	57907750	+	0	NA	Intergenic	Intergenic	-96204	NR_147083	105376992		NR_147083	ENSG00000275852	LINC01742	-	long intergenic non-protein coding RNA 1742	ncRNA
219171	chr8	66521501	66522400	+	0	NA	Intergenic	MIRc|SINE|MIR	28384	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
45200	chr11	117807351	117808280	+	0	NA	intron (NM_001367905, intron 1 of 6)	intron (NM_001367905, intron 1 of 6)	9699	NM_001367905	57453		NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
200048	chr6	129766951	129767590	+	0	NA	Intergenic	Intergenic	-57093	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
29762	chr10	72243871	72244750	+	0	NA	Intergenic	Intergenic	-27176	NM_001369099	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
154777	chr22	36531121	36531780	+	0	NA	Intergenic	MIR|SINE|MIR	-2284	NR_156418	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
239123	chrY	11303351	11303850	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	1117990	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
182540	chr5	65683921	65684180	+	0	NA	intron (NM_019072, intron 6 of 10)	L2a|LINE|L2	38059	NM_019072	54557		NM_019072	ENSG00000197860	SGTB	SGT2	small glutamine rich tetratricopeptide repeat co-chaperone beta	protein-coding
164165	chr3	56781721	56782180	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-6233	NM_001377413	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
225469	chr9	35603271	35604700	+	0	NA	Intergenic	CpG	-1277	NM_006285	7016		NM_006285	ENSG00000107140	TESK1	-	testis associated actin remodelling kinase 1	protein-coding
121798	chr19	47908971	47909980	+	0	NA	Intergenic	Intergenic	1797	NR_024216	100169959		NR_024216		SNAR-A13	-	small NF90 (ILF3) associated RNA A13	snRNA
220737	chr8	102113851	102114700	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	10059	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
172135	chr4	1191801	1192230	+	0	NA	intron (NM_001199021, intron 1 of 7)	intron (NM_001199021, intron 1 of 7)	16947	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
60433	chr13	40997151	40997400	+	0	NA	intron (NM_001370329, intron 1 of 9)	AluSx4|SINE|Alu	-14376	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
76676	chr15	75712901	75713300	+	0	NA	promoter-TSS (NM_001897)	promoter-TSS (NM_001897)	-252	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
178517	chr4	150889701	150889900	+	0	NA	intron (NM_001367550, intron 17 of 56)	MER58B|DNA|hAT-Charlie	125467	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
18111	chr1	160706651	160706850	+	0	NA	intron (NM_001256030, intron 1 of 2)	intron (NM_001256030, intron 1 of 2)	5072	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
211429	chr7	105061401	105061880	+	0	NA	intron (NM_182931, intron 3 of 26)	intron (NM_182931, intron 3 of 26)	47435	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
231132	chr9	129841651	129842200	+	0	NA	intron (NM_001008563, intron 1 of 25)	MIR3|SINE|MIR	6467	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
184320	chr5	96925051	96925150	+	0	NA	Intergenic	Intergenic	-10980	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
74255	chr15	56963751	56964400	+	0	NA	intron (NM_207038, intron 3 of 19)	intron (NM_207038, intron 3 of 19)	44630	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
120105	chr19	42154671	42155250	+	0	NA	Intergenic	Intergenic	-21447	NR_036208	100422980		NR_036208	ENSG00000266226	MIR4323	-	microRNA 4323	ncRNA
213535	chr7	139087821	139088500	+	0	NA	intron (NM_020119, intron 2 of 12)	intron (NM_020119, intron 2 of 12)	21560	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
238055	chrX	135524071	135524330	+	0	NA	intron (NM_001351601, intron 2 of 17)	intron (NM_001351601, intron 2 of 17)	-3526	NR_046740	100874118		NR_046740	ENSG00000225235	INTS6L-AS1	DDX26B-AS1	INTS6L antisense RNA 1	ncRNA
18818	chr1	167651321	167652000	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	21428	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
171587	chr3	197027201	197027700	+	0	NA	intron (NM_033316, intron 2 of 6)	intron (NM_033316, intron 2 of 6)	2367	NM_033316	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
234915	chrX	36985471	36985630	+	0	NA	Intergenic	CpG	-22816	NM_001013736	442444		NM_001013736	ENSG00000198173	FAM47C	-	family with sequence similarity 47 member C	protein-coding
148279	chr20	63695851	63698480	+	0	NA	TTS (NM_001283010)	TTS (NM_001283010)	513	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
191369	chr6	7312421	7314180	+	0	NA	promoter-TSS (NM_001292008)	promoter-TSS (NM_001292008)	-101	NM_001292008	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
66687	chr14	64043801	64044000	+	0	NA	intron (NM_015180, intron 45 of 114)	THE1B-int|LTR|ERVL-MaLR	51225	NR_031677	100313830		NR_031677	ENSG00000221537	MIR548H1	MIR548H-1|MIRN548H1	microRNA 548h-1	ncRNA
222867	chr8	142736451	142736950	+	0	NA	non-coding (NR_156431, exon 3 of 3)	non-coding (NR_156431, exon 3 of 3)	5706	NM_020427	57152		NM_020427	ENSG00000126233	SLURP1	ANUP|ARS|ArsB|LY6-MT|LY6LS|MDM	secreted LY6/PLAUR domain containing 1	protein-coding
85907	chr16	57076671	57077530	+	0	NA	intron (NM_001384955, intron 39 of 47)	L3b|LINE|CR1	-15483	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
178760	chr4	153257101	153257530	+	0	NA	promoter-TSS (NM_001302694)	promoter-TSS (NM_001302694)	-44	NM_001302694	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
49625	chr12	28079421	28079680	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-106817	NM_198965	5744		NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
99766	chr17	51056751	51057080	+	0	NA	intron (NM_001130527, intron 2 of 29)	intron (NM_001130527, intron 2 of 29)	-10037	NM_001251971	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
155901	chr22	39542951	39543700	+	0	NA	Intergenic	Intergenic	-10577	NM_194326	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
145650	chr20	44900251	44900700	+	0	NA	intron (NM_003404, intron 2 of 6)	intron (NM_003404, intron 2 of 6)	-9585	NM_001372179	80336		NM_001124756	ENSG00000101104	PABPC1L	C20orf119|EPAB|PABPC1L1|dJ1069P2.3	poly(A) binding protein cytoplasmic 1 like	protein-coding
128800	chr2	62333901	62334230	+	0	NA	Intergenic	Intergenic	118544	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
65448	chr14	51717021	51717100	+	0	NA	promoter-TSS (NM_001267047)	promoter-TSS (NM_001267047)	-223	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
17343	chr1	156484601	156485430	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	5672	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
393	chr1	1051271	1051430	+	0	NA	exon (NM_001364727, exon 31 of 36)	exon (NM_001364727, exon 31 of 36)	-8384	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
15063	chr1	148447251	148447550	+	0	NA	intron (NR_027468, intron 1 of 4)	Kanga11a|DNA|TcMar-Tc2	12520	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
53012	chr12	57527701	57527900	+	0	NA	intron (NM_052897, intron 8 of 12)	intron (NM_052897, intron 8 of 12)	4976	NM_052897	114785		NM_052897	ENSG00000166987	MBD6	-	methyl-CpG binding domain protein 6	protein-coding
44228	chr11	96345101	96345300	+	0	NA	Intergenic	L1PA4|LINE|L1	-2005	NM_032427	84441		NM_032427	ENSG00000184384	MAML2	MAM-3|MAM2|MAM3|MLL-MAML2	mastermind like transcriptional coactivator 2	protein-coding
78564	chr15	93018071	93018680	+	0	NA	intron (NM_001271, intron 37 of 38)	intron (NM_001271, intron 37 of 38)	54781	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
166927	chr3	125110621	125110880	+	0	NA	intron (NM_024628, intron 8 of 13)	intron (NM_024628, intron 8 of 13)	40802	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
155651	chr22	38992971	38993380	+	0	NA	TTS (NM_001270411)	TTS (NM_001270411)	5045	NR_104187	100874530		NR_104187	ENSG00000249310	APOBEC3B-AS1	-	APOBEC3B antisense RNA 1	ncRNA
50107	chr12	44867521	44867980	+	0	NA	intron (NM_001145108, intron 2 of 19)	L1MA8|LINE|L1	7911	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
145900	chr20	45963921	45964530	+	0	NA	intron (NM_022095, intron 7 of 27)	MIRc|SINE|MIR	7978	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
193348	chr6	30219171	30219600	+	0	NA	Intergenic	LTR41|LTR|ERVL	-5979	NM_001242783	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
22467	chr1	221701051	221701550	+	0	NA	TTS (NR_111940)	TTS (NR_111940)	35600	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
167863	chr3	134365101	134365300	+	0	NA	intron (NM_001278683, intron 5 of 9)	intron (NM_001278683, intron 5 of 9)	2662	NR_106885	102466744		NR_106885		MIR6827	hsa-mir-6827	microRNA 6827	ncRNA
178491	chr4	150242651	150243080	+	0	NA	intron (NR_036614, intron 12 of 16)	intron (NR_036614, intron 12 of 16)	164420	NR_036614	166614		NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
30824	chr10	86365571	86365930	+	0	NA	intron (NM_017551, intron 1 of 15)	CpG-3093	1045	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
96268	chr17	39859401	39859600	+	0	NA	intron (NM_183231, intron 1 of 5)	AluJb|SINE|Alu	4688	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
13382	chr1	113931401	113932830	+	0	NA	intron (NM_001369806, intron 1 of 15)	intron (NM_001369806, intron 1 of 15)	2271	NM_001369807	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
106020	chr18	8095971	8096130	+	0	NA	intron (NM_001378146, intron 7 of 29)	intron (NM_001378146, intron 7 of 29)	149175	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
133928	chr2	130390821	130391880	+	0	NA	Intergenic	CpG	35294	NM_014369	26469		NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase non-receptor type 18	protein-coding
216521	chr8	20494771	20495130	+	0	NA	Intergenic	Intergenic	119976	NR_145737	109616983		NR_145737		SNORD3F	RNU3P2|SNORD3P2|U3|U3.2	small nucleolar RNA, C/D box 3F	snoRNA
113009	chr19	7912221	7914000	+	0	NA	3' UTR (NM_001297555, exon 12 of 12)	3' UTR (NM_001297555, exon 12 of 12)	-1720	NM_001195259	100507588		NM_001195259	ENSG00000260001	TGFBR3L	GEMP|TGFR-3L	transforming growth factor beta receptor 3 like	protein-coding
63020	chr13	112765171	112765730	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	-10719	NR_046661	100874205		NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
160533	chr3	30660171	30660430	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	53699	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
4198	chr1	19444171	19444730	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	39845	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
199393	chr6	116387001	116387200	+	0	NA	intron (NM_001322944, intron 1 of 4)	intron (NM_001322944, intron 1 of 4)	-15381	NR_148944	100287467		NR_148944		LOC100287467	-	uncharacterized LOC100287467	ncRNA
146853	chr20	51437471	51437630	+	0	NA	intron (NM_173091, intron 6 of 9)	intron (NM_173091, intron 6 of 9)	15427	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
161636	chr3	43297871	43299230	+	0	NA	intron (NM_001330750, intron 1 of 4)	intron (NM_001330750, intron 1 of 4)	12010	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
103513	chr17	78437251	78437550	+	0	NA	intron (NM_173628, intron 74 of 80)	intron (NM_173628, intron 74 of 80)	-47510	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
126688	chr2	30143401	30144330	+	0	NA	Intergenic	L1ME3G|LINE|L1	-3142	NM_001127401	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
50309	chr12	46460801	46461130	+	0	NA	intron (NR_125378, intron 3 of 3)	MIR|SINE|MIR	76858	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
221314	chr8	123036301	123036880	+	0	NA	intron (NM_024295, intron 1 of 7)	L1ME3A|LINE|L1	5712	NM_024295	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
35805	chr11	2204321	2205030	+	0	NA	Intergenic	Intergenic	31612	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
236573	chrX	72620501	72620800	+	0	NA	intron (NM_001172436, intron 18 of 29)	intron (NM_001172436, intron 18 of 29)	-47547	NM_001166420	55869		NM_018486	ENSG00000147099	HDAC8	CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS	histone deacetylase 8	protein-coding
35491	chr11	1517171	1517980	+	0	NA	Intergenic	Intergenic	-30796	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
31499	chr10	96668771	96669680	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	51289	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
81172	chr16	4460571	4460950	+	0	NA	TTS (NM_001351996)	TTS (NM_001351996)	13865	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
82576	chr16	18784051	18784830	+	0	NA	intron (NM_001019, intron 4 of 4)	AluSp|SINE|Alu	5894	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
72009	chr15	26080901	26081300	+	0	NA	Intergenic	Intergenic	-34713	NR_038852	503519		NR_038851	ENSG00000259150	LINC00929	-	long intergenic non-protein coding RNA 929	ncRNA
170267	chr3	184276551	184276880	+	0	NA	intron (NM_001100120, intron 2 of 18)	intron (NM_001100120, intron 2 of 18)	693	NM_001100121	9718		NM_001037324	ENSG00000145194	ECE2	EEF1AKMT4	endothelin converting enzyme 2	protein-coding
227810	chr9	93204771	93205250	+	0	NA	intron (NM_001282394, intron 1 of 29)	intron (NM_001282394, intron 1 of 29)	20080	NM_006648	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
87580	chr16	72921221	72921680	+	0	NA	intron (NM_006885, intron 3 of 9)	intron (NM_006885, intron 3 of 9)	126678	NM_006885	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
228384	chr9	99120371	99120730	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	15437	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233584	chrX	310821	311300	+	0	NA	intron (NM_012227, intron 7 of 9)	CpG	7759	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
65626	chr14	52289821	52290080	+	0	NA	Intergenic	Helitron3Na_Mam|RC|Helitron	22252	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
68603	chr14	89603871	89604500	+	0	NA	intron (NM_001085471, intron 1 of 6)	L1MEd|LINE|L1	14980	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
13518	chr1	114755851	114756500	+	0	NA	intron (NM_001242891, intron 1 of 20)	intron (NM_001242891, intron 1 of 20)	1809	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
126415	chr2	27684921	27685700	+	0	NA	intron (NM_018158, intron 10 of 13)	intron (NM_018158, intron 10 of 13)	-21470	NM_001282730	9913		NM_014860	ENSG00000119760	SUPT7L	SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H	SPT7 like, STAGA complex subunit gamma	protein-coding
107356	chr18	45916451	45916550	+	0	NA	exon (NM_020964, exon 18 of 44)	exon (NM_020964, exon 18 of 44)	50829	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
192883	chr6	27480751	27480850	+	0	NA	Intergenic	Intergenic	-7682	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
12707	chr1	109496751	109497050	+	0	NA	3' UTR (NM_001134400, exon 3 of 3)	3' UTR (NM_001134400, exon 3 of 3)	2806	NM_182580	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
195414	chr6	36873571	36873730	+	0	NA	intron (NM_001286636, intron 1 of 9)	intron (NM_001286636, intron 1 of 9)	1153	NM_016059	51645		NM_016059	ENSG00000137168	PPIL1	CGI-124|CYPL1|PCH14|PPIase|hCyPX	peptidylprolyl isomerase like 1	protein-coding
198705	chr6	108133351	108134480	+	0	NA	intron (NR_145458, intron 1 of 1)	CpG	10282	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
19402	chr1	174161321	174161880	+	0	NA	intron (NM_001366447, intron 1 of 20)	intron (NM_001366447, intron 1 of 20)	2080	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
187740	chr5	143595301	143595700	+	0	NA	Intergenic	Intergenic	-84360	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
186150	chr5	134170621	134170880	+	0	NA	intron (NM_170679, intron 2 of 5)	intron (NM_170679, intron 2 of 5)	6200	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
213902	chr7	142478451	142478780	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	4088	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
178336	chr4	145809201	145809500	+	0	NA	intron (NM_178835, intron 8 of 14)	LTR8B|LTR|ERV1	129204	NM_001080531	646603		NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
203885	chr7	1481371	1481530	+	0	NA	exon (NM_001080453, exon 28 of 48)	exon (NM_001080453, exon 28 of 48)	-21980	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
74614	chr15	60595001	60595200	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	-2574	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
47767	chr12	6548621	6548880	+	0	NA	exon (NM_080730, exon 6 of 10)	exon (NM_080730, exon 6 of 10)	7292	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
123778	chr19	55110971	55111330	+	0	NA	intron (NM_017607, intron 3 of 21)	L1MB8|LINE|L1	6487	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
80222	chr16	2180751	2181800	+	0	NA	exon (NM_020764, exon 18 of 20)	exon (NM_020764, exon 18 of 20)	15330	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
73864	chr15	50262071	50263000	+	0	NA	intron (NM_002112, intron 2 of 11)	intron (NM_002112, intron 2 of 11)	3191	NM_002112	3067		NM_002112	ENSG00000140287	HDC	-	histidine decarboxylase	protein-coding
97231	chr17	42825721	42825980	+	0	NA	Intergenic	AluJb|SINE|Alu	-1534	NM_001314000	8678		NM_003766	ENSG00000126581	BECN1	ATG6|VPS30|beclin1	beclin 1	protein-coding
205125	chr7	6990651	6991630	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	75905	NR_037454	100500886		NR_037454	ENSG00000266287	MIR3683	-	microRNA 3683	ncRNA
222361	chr8	133567601	133567800	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	4187	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
208362	chr7	66590521	66590880	+	0	NA	intron (NR_111977, intron 1 of 5)	AluJr|SINE|Alu	1707	NR_111978	493754		NR_002933	ENSG00000291136	RABGEF1P1	GS1-124K5.11	RABGEF1 pseudogene 1	pseudo
144745	chr20	36594371	36595000	+	0	NA	TTS (NM_021809)	TTS (NM_021809)	-11094	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
59897	chr13	30739671	30741630	+	0	NA	intron (NM_001629, intron 1 of 4)	L2|LINE|L2	5107	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
37332	chr11	14834851	14835150	+	0	NA	exon (NM_000922, exon 11 of 16)	exon (NM_000922, exon 11 of 16)	56671	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
74775	chr15	63248451	63248550	+	0	NA	intron (NM_016530, intron 2 of 7)	AluSg4|SINE|Alu	-29050	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
228230	chr9	97911871	97912280	+	0	NA	intron (NM_001371657, intron 3 of 5)	MIRc|SINE|MIR	10106	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
213652	chr7	139773271	139773830	+	0	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	4448	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
157273	chr22	44031071	44031630	+	0	NA	intron (NM_001243386, intron 1 of 11)	intron (NM_001243386, intron 1 of 11)	5046	NM_001243386	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
229920	chr9	126623171	126623600	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	9457	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
18450	chr1	161537321	161537680	+	0	NA	Intergenic	MER11A|LTR|ERVK	12318	NM_000569	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
49752	chr12	31735851	31736950	+	0	NA	Intergenic	AluY|SINE|Alu	-7226	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
121284	chr19	46720271	46720780	+	0	NA	intron (NM_001039877, intron 17 of 17)	intron (NM_001039877, intron 17 of 17)	-3398	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
215774	chr8	2128751	2129250	+	0	NA	intron (NM_003970, intron 31 of 36).2	intron (NM_003970, intron 31 of 36).2	52411	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
42935	chr11	73407321	73407850	+	0	NA	exon (NM_001286051, exon 5 of 6)	exon (NM_001286051, exon 5 of 6)	30917	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
142412	chr20	3888051	3890980	+	0	NA	promoter-TSS (NM_001324193)	promoter-TSS (NM_001324193)	128	NM_001324191	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
15470	chr1	150357451	150357850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6461	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
41903	chr11	67269901	67270500	+	0	NA	intron (NM_001619, intron 1 of 20)	intron (NM_001619, intron 1 of 20)	3727	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
158025	chr22	49917671	49919350	+	0	NA	promoter-TSS (NM_024105)	promoter-TSS (NM_024105)	-72	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
112762	chr19	7409621	7410530	+	0	NA	intron (NM_015318, intron 1 of 20)	AluSx3|SINE|Alu	14930	NM_015318	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
95693	chr17	38430201	38430600	+	0	NA	intron (NM_001199417, intron 1 of 23).2	intron (NM_001199417, intron 1 of 23).2	1936	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
189965	chr5	177436251	177436750	+	0	NA	exon (NM_002082, exon 13 of 16)	exon (NM_002082, exon 13 of 16)	-9495	NM_001375593	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
232911	chr9	136861621	136862130	+	0	NA	TTS (NM_001281299)	TTS (NM_001281299)	4433	NM_001281297	8721		NM_003792	ENSG00000107223	EDF1	CFAP280|EDF-1|MBF1	endothelial differentiation related factor 1	protein-coding
147541	chr20	59525571	59525750	+	0	NA	Intergenic	Intergenic	-51849	NM_001199505	116154		NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
57638	chr12	122512701	122513230	+	0	NA	intron (NR_036436, intron 6 of 9)	AluSz6|SINE|Alu	-12033	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
9217	chr1	45675671	45676030	+	0	NA	intron (NM_021639, intron 2 of 12)	intron (NM_021639, intron 2 of 12)	10683	NM_021639	60313		NM_021639	ENSG00000159592	GPBP1L1	SP192	GC-rich promoter binding protein 1 like 1	protein-coding
157540	chr22	45436771	45437380	+	0	NA	Intergenic	LTR12C|LTR|ERV1	23382	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
128214	chr2	53999251	53999350	+	0	NA	intron (NM_001320587, intron 2 of 5)	L1M8|LINE|L1	28187	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
163458	chr3	50609701	50609900	+	0	NA	intron (NM_145071, intron 1 of 2)	L2b|LINE|L2	1974	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
159153	chr3	12750551	12750880	+	0	NA	intron (NM_001284406, intron 1 of 11)	FLAM_A|SINE|Alu	8544	NM_001284407	55287		NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
27277	chr10	30152071	30152230	+	0	NA	Intergenic	L1PB1|LINE|L1	-36656	NM_001350021	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
174131	chr4	36225201	36225600	+	0	NA	intron (NR_146894, intron 2 of 32)	intron (NR_146894, intron 2 of 32)	18539	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
61113	chr13	48489771	48490350	+	0	NA	non-coding (NR_147985, exon 12 of 12)	non-coding (NR_147985, exon 12 of 12)	43020	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
110832	chr19	2494351	2495730	+	0	NA	Intergenic	Intergenic	18913	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
48700	chr12	10608021	10608530	+	0	NA	intron (NM_001319985, intron 3 of 4)	intron (NM_001319985, intron 3 of 4)	4703	NM_001300739	55110		NM_018048	ENSG00000111196	MAGOHB	MGN2|mago|magoh	mago homolog B, exon junction complex subunit	protein-coding
162161	chr3	46977851	46978150	+	0	NA	intron (NM_144716, intron 1 of 7)	intron (NM_144716, intron 1 of 7)	-1233	NM_001277074	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
6868	chr1	31170871	31171050	+	0	NA	Intergenic	Intergenic	68927	NM_024522	79570		NM_024522	ENSG00000084628	NKAIN1	FAM77C	sodium/potassium transporting ATPase interacting 1	protein-coding
94407	chr17	28984421	28984680	+	0	NA	intron (NM_001290202, intron 1 of 16)	intron (NM_001290202, intron 1 of 16)	21483	NM_178860	124925		NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
189851	chr5	177116601	177117780	+	0	NA	Intergenic	CpG	-15889	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
236240	chrX	65736321	65736580	+	0	NA	intron (NM_002444, intron 8 of 12)	AluSc8|SINE|Alu	68796	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
161114	chr3	38210021	38210630	+	0	NA	intron (NM_005109, intron 4 of 17)	L1MCa|LINE|L1	44788	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
121330	chr19	46779621	46779880	+	0	NA	intron (NM_005628, intron 4 of 7)	intron (NM_005628, intron 4 of 7)	5064	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
68069	chr14	75264401	75264880	+	0	NA	Intergenic	AluSx|SINE|Alu	-14188	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
75984	chr15	70533071	70533230	+	0	NA	Intergenic	Intergenic	-27222	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
228017	chr9	95750751	95751600	+	0	NA	Intergenic	Intergenic	-124516	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
199099	chr6	111671951	111672980	+	0	NA	intron (NM_001370529, intron 11 of 11)	intron (NM_001370529, intron 11 of 11)	-66191	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
224957	chr9	33048321	33048580	+	0	NA	intron (NM_018225, intron 10 of 11)	intron (NM_018225, intron 10 of 11)	23177	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
148246	chr20	63644051	63644700	+	0	NA	intron (NR_075070, intron 1 of 4)	intron (NR_075070, intron 1 of 4)	8391	NM_001276310	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
235621	chrX	48026621	48027080	+	0	NA	Intergenic	Intergenic	19109	NM_001079900	729201		NM_001079900	ENSG00000171478	SPACA5B	LYZL5B	sperm acrosome associated 5B	protein-coding
113303	chr19	8564421	8565480	+	0	NA	intron (NM_012335, intron 1 of 27)	AluSx1|SINE|Alu	12492	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
72663	chr15	38534051	38534350	+	0	NA	intron (NM_001128602, intron 2 of 15)	MamTip2|DNA|hAT-Tip100	30614	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
215673	chr8	727151	727450	+	0	NA	intron (NM_207332, intron 1 of 5)	intron (NM_207332, intron 1 of 5)	3924	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
101262	chr17	66325951	66326730	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	23727	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
111050	chr19	3102671	3103080	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	8513	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
201551	chr6	149217371	149217800	+	0	NA	promoter-TSS (NM_001292035)	promoter-TSS (NM_001292035)	-339	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
2157	chr1	8420471	8420830	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	3182	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
173355	chr4	7834921	7835380	+	0	NA	intron (NM_001371091, intron 7 of 17)	intron (NM_001371091, intron 7 of 17)	37158	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
231964	chr9	133152571	133152930	+	0	NA	TTS (NM_001288573)	TTS (NM_001288573)	-3540	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
221087	chr8	117439421	117440280	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-80863	NM_001282986	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
36636	chr11	7576001	7576830	+	0	NA	promoter-TSS (NM_001351859)	promoter-TSS (NM_001351859)	-625	NM_001351859	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
194206	chr6	32180671	32181500	+	0	NA	TTS (NM_006913).6	TTS (NM_006913).6	1269	NR_106891	102465500		NR_106891	ENSG00000277264	MIR6833	hsa-mir-6833	microRNA 6833	ncRNA
108963	chr18	79525971	79526330	+	0	NA	intron (NM_172387, intron 9 of 9)	CpG	-53132	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
224607	chr9	20397401	20397600	+	0	NA	intron (NM_001286691, intron 5 of 10)	intron (NM_001286691, intron 5 of 10)	13738	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
127834	chr2	45001251	45001550	+	0	NA	Intergenic	CpG	8052	NM_016932	10736		NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
80714	chr16	3087321	3087780	+	0	NA	Intergenic	Intergenic	11744	NM_001282415	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
199142	chr6	111720971	111721130	+	0	NA	intron (NM_002037, intron 3 of 13)	L2a|LINE|L2	38081	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
168184	chr3	140941491	140943100	+	0	NA	intron (NM_018155, intron 1 of 6)	CpG	459	NM_001104647	55186		NM_018155	ENSG00000114120	SLC25A36	HHF8|PNC2	solute carrier family 25 member 36	protein-coding
114980	chr19	14031351	14033230	+	0	NA	TTS (NM_001311197)	TTS (NM_001311197)	528	NM_004843	9466		NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
56661	chr12	119902091	119902380	+	0	NA	Intergenic	Intergenic	-24915	NM_007174	11113		NM_007174	ENSG00000122966	CIT	CITK|CRIK|MCPH17|STK21	citron rho-interacting serine/threonine kinase	protein-coding
42457	chr11	69546521	69546600	+	0	NA	Intergenic	LTR16D2|LTR|ERVL	60999	NR_120543	101928292		NR_120542		LINC01488	BRCAT8|CUPID1	long intergenic non-protein coding RNA 1488	ncRNA
80675	chr16	3028051	3028910	+	0	NA	TTS (NM_001347704)	TTS (NM_001347704)	-4001	NR_047572	100128770		NR_047572	ENSG00000205890	LOC100128770	-	uncharacterized LOC100128770	ncRNA
46578	chr11	128506331	128506800	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	15745	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
160112	chr3	19945551	19945650	+	0	NA	intron (NM_001330688, intron 1 of 14)	L2a|LINE|L2	1383	NM_001330688	151651		NM_144715	ENSG00000163576	EFHB	CFAP21	EF-hand domain family member B	protein-coding
192259	chr6	20292821	20293080	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-80481	NM_001080480	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
66181	chr14	60656001	60656300	+	0	NA	Intergenic	Intergenic	-6673	NM_005982	6495		NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
173589	chr4	10416251	10416950	+	0	NA	Intergenic	Intergenic	40826	NM_053042	85460		NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
193367	chr6	30328971	30329130	+	0	NA	promoter-TSS (NM_001199119)	promoter-TSS (NM_001199119)	-261	NM_001199119	202658		NM_001199119	ENSG00000248167	TRIM39-RPP21	TRIM39R	TRIM39-RPP21 readthrough	protein-coding
9177	chr1	45594351	45594850	+	0	NA	intron (NM_001195193, intron 2 of 12)	AluJb|SINE|Alu	10559	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
140790	chr2	235764951	235765250	+	0	NA	intron (NM_001037131, intron 6 of 17)	CpG	-247179	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
100264	chr17	59564021	59564280	+	0	NA	Intergenic	Intergenic	-1460	NM_001166301	79665		NM_024612	ENSG00000108406	DHX40	ARG147|DDX40|PAD	DEAH-box helicase 40	protein-coding
150460	chr21	42512571	42512730	+	0	NA	intron (NM_018964, intron 2 of 20)	intron (NM_018964, intron 2 of 20)	-1202	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
47949	chr12	6849151	6849650	+	0	NA	non-coding (NR_138531, exon 4 of 5)	non-coding (NR_138531, exon 4 of 5)	1886	NR_123727	83461		NM_031299	ENSG00000111665	CDCA3	GRCC8|TOME-1|TOME1	cell division cycle associated 3	protein-coding
112566	chr19	6597771	6598530	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-7000	NM_001252	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
117284	chr19	19479471	19479830	+	0	NA	intron (NM_001384541, intron 2 of 10)	L1MC3|LINE|L1	35898	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
103132	chr17	77389901	77391030	+	0	NA	intron (NM_001113494, intron 1 of 10)	AluY|SINE|Alu	6589	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
79857	chr16	1487521	1487780	+	0	NA	exon (NM_001328608, exon 2 of 3)	exon (NM_001328608, exon 2 of 3)	817	NM_001013658	390667		NM_001013658	ENSG00000251692	PTX4	C16orf38	pentraxin 4	protein-coding
49556	chr12	26832701	26834580	+	0	NA	promoter-TSS (NM_002223)	promoter-TSS (NM_002223)	-446	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
237805	chrX	129933851	129934430	+	0	NA	Intergenic	Intergenic	27976	NM_006649	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
230962	chr9	129452371	129453180	+	0	NA	Intergenic	Intergenic	-35885	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
213427	chr7	138161471	138162000	+	0	NA	Intergenic	Intergenic	37977	NR_039678	100616226		NR_039678	ENSG00000284028	MIR4468	-	microRNA 4468	ncRNA
173660	chr4	13654141	13654900	+	0	NA	promoter-TSS (NR_121681)	promoter-TSS (NR_121681)	-659	NR_121681	101929071		NR_121681	ENSG00000250634	LINC01182	-	long intergenic non-protein coding RNA 1182	ncRNA
136400	chr2	176136651	176137150	+	0	NA	non-coding (NR_038435, exon 1 of 3)	non-coding (NR_038435, exon 1 of 3)	198	NR_038435	100506783		NR_038435		HOXD-AS2	-	HOXD cluster antisense RNA 2	ncRNA
62713	chr13	104767901	104768100	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-697867	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
66888	chr14	65164071	65164530	+	0	NA	Intergenic	Intergenic	58047	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
140461	chr2	233169151	233169450	+	0	NA	intron (NM_001017915, intron 13 of 26).2	intron (NM_001017915, intron 13 of 26).2	-82271	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
18617	chr1	165854121	165854380	+	0	NA	intron (NM_012474, intron 1 of 6)	intron (NM_012474, intron 1 of 6)	26636	NM_012474	7371		NM_012474	ENSG00000143179	UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
146289	chr20	49129301	49129850	+	0	NA	intron (NM_001322927, intron 4 of 11)	L1ME1|LINE|L1	58759	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
110711	chr19	2306921	2307380	+	0	NA	intron (NM_001101391, intron 1 of 1)	intron (NM_001101391, intron 1 of 1)	1004	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
150791	chr21	43881201	43881600	+	0	NA	intron (NM_001369878, intron 1 of 8)	intron (NM_001369878, intron 1 of 8)	16177	NM_001369878	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
182718	chr5	68251051	68251880	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	35709	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
12219	chr1	100404571	100404730	+	0	NA	intron (NM_001319210, intron 4 of 16)	AluSc8|SINE|Alu	52144	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
225745	chr9	37079491	37080850	+	0	NA	non-coding (NR_036592, exon 1 of 2)	non-coding (NR_036592, exon 1 of 2)	274	NR_036592	100506710		NR_036592	ENSG00000281649	EBLN3P	EBLN3	endogenous Bornavirus like nucleoprotein 3, pseudogene	pseudo
212189	chr7	117048621	117048950	+	0	NA	intron (NM_001369599, intron 1 of 15)	Tigger2|DNA|TcMar-Tigger	28567	NM_001369600	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
185815	chr5	132444471	132444630	+	0	NA	intron (NR_161242, intron 2 of 3)	MER4B|LTR|ERV1	33621	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
120282	chr19	43439051	43440200	+	0	NA	Intergenic	LTR47A2|LTR|ERVL	24735	NM_001130011	83639		NM_031451	ENSG00000131126	TEX101	CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP	testis expressed 101	protein-coding
5816	chr1	26620071	26622450	+	0	NA	Intergenic	CpG	66718	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
33653	chr10	119727351	119727650	+	0	NA	intron (NM_001243195, intron 1 of 4)	MIRb|SINE|MIR	1450	NM_014937	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
127050	chr2	37241171	37241730	+	0	NA	intron (NR_146401, intron 4 of 9)	intron (NR_146401, intron 4 of 9)	9792	NR_146404	55471		NM_018607	ENSG00000003509	NDUFAF7	C2orf56|MidA|PRO1853	NADH:ubiquinone oxidoreductase complex assembly factor 7	protein-coding
222848	chr8	142620021	142620800	+	0	NA	Intergenic	Intergenic	-5931	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
207504	chr7	44768101	44768930	+	0	NA	3' UTR (NM_031449, exon 19 of 19)	3' UTR (NM_031449, exon 19 of 19)	12327	NM_174929	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
39022	chr11	47752451	47753150	+	0	NA	intron (NM_015308, intron 4 of 16)	AluSx|SINE|Alu	14541	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
156009	chr22	39939751	39940130	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	-6877	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
22294	chr1	212861651	212861750	+	0	NA	intron (NM_014053, intron 1 of 9)	AluY|SINE|Alu	3425	NM_014053	28982		NM_014053	ENSG00000162769	FLVCR1	AXPC1|FLVCR|MFSD7B|PCA|PCARP|SLC49A1	FLVCR choline and heme transporter 1	protein-coding
234103	chrX	9420651	9420750	+	0	NA	Intergenic	Intergenic	-42595	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
6982	chr1	31802551	31802850	+	0	NA	intron (NM_001281988, intron 1 of 14)	L1ME4a|LINE|L1	13351	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
120913	chr19	45631721	45632030	+	0	NA	intron (NR_147903, intron 9 of 19)	AluJr|SINE|Alu	7212	NR_029886	442902		NR_029886	ENSG00000284544	MIR330	MIRN330|hsa-mir-330|mir-330	microRNA 330	ncRNA
106593	chr18	22176671	22177480	+	0	NA	exon (NM_005257, exon 3 of 7)	exon (NM_005257, exon 3 of 7)	7486	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
109790	chr19	1148551	1149000	+	0	NA	intron (NM_014963, intron 3 of 31)	intron (NM_014963, intron 3 of 31)	-16554	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
149264	chr21	26136701	26136900	+	0	NA	intron (NM_001136131, intron 1 of 15)	intron (NM_001136131, intron 1 of 15)	3590	NM_001136016	351		NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|alpha-sAPP|preA4	amyloid beta precursor protein	protein-coding
237661	chrX	124279771	124279950	+	0	NA	Intergenic	AluSx3|SINE|Alu	-52800	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
117330	chr19	19522251	19522550	+	0	NA	intron (NM_015965, intron 1 of 4)	L1MB8|LINE|L1	6175	NM_015965	51079		NM_015965	ENSG00000186010	NDUFA13	B16.6|CDA016|CGI-39|GRIM-19|GRIM19|MC1DN28	NADH:ubiquinone oxidoreductase subunit A13	protein-coding
50601	chr12	48669721	48670180	+	0	NA	intron (NM_017822, intron 5 of 9)	AluSc|SINE|Alu	-2357	NR_002951	677794		NR_002951	ENSG00000207313	SNORA2B	ACA2b	small nucleolar RNA, H/ACA box 2B	snoRNA
23975	chr1	235180001	235180400	+	0	NA	intron (NM_016374, intron 20 of 23)	AluJb|SINE|Alu	9916	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
109461	chr19	792471	792780	+	0	NA	Intergenic	Intergenic	-4827	NM_002819	5725		NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
130069	chr2	74474901	74475350	+	0	NA	intron (NM_001365575, intron 7 of 8)	intron (NM_001365575, intron 7 of 8)	-2445	NM_053050	116540		NM_053050	ENSG00000204822	MRPL53	L53MT|mL53	mitochondrial ribosomal protein L53	protein-coding
61326	chr13	50511351	50511450	+	0	NA	intron (NR_109974, intron 5 of 6)	MLT2A2|LTR|ERVL	16049	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
200067	chr6	130035771	130036580	+	0	NA	intron (NM_001007102, intron 2 of 21)	intron (NM_001007102, intron 2 of 21)	16531	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
217087	chr8	23854371	23854530	+	0	NA	exon (NM_003155, exon 1 of 4)	exon (NM_003155, exon 1 of 4)	356	NM_003155	6781		NM_003155	ENSG00000159167	STC1	STC	stanniocalcin 1	protein-coding
126326	chr2	27358451	27359100	+	0	NA	Intergenic	Intergenic	-1741	NM_001035521	2976		NM_001521	ENSG00000115207	GTF3C2	TF3C-beta|TFIIIC-BETA|TFIIIC110	general transcription factor IIIC subunit 2	protein-coding
189300	chr5	172123321	172123580	+	0	NA	intron (NM_005990, intron 3 of 18)	intron (NM_005990, intron 3 of 18)	64774	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
123495	chr19	54199501	54199700	+	0	NA	Intergenic	MIR|SINE|MIR	-1258	NM_001321701	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
111834	chr19	4533601	4534000	+	0	NA	intron (NM_001013706, intron 2 of 7)	intron (NM_001013706, intron 2 of 7)	1424	NM_001013706	440503		NM_001013706	ENSG00000214456	PLIN5	LSDA5|LSDP5|MLDP|OXPAT	perilipin 5	protein-coding
199077	chr6	111656201	111656700	+	0	NA	Intergenic	Intergenic	-50176	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
217314	chr8	27406671	27407030	+	0	NA	intron (NM_173174, intron 7 of 35)	intron (NM_173174, intron 7 of 35)	-26520	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
218880	chr8	60547351	60548500	+	0	NA	intron (NM_001242644, intron 1 of 6)	SVA_D|Retroposon|SVA	30938	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
63875	chr14	21736971	21737130	+	0	NA	Intergenic	Intergenic	-66033	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
31563	chr10	97291851	97293350	+	0	NA	promoter-TSS (NR_037909)	promoter-TSS (NR_037909)	37	NM_032900	84986		NM_032900	ENSG00000213390	ARHGAP19	-	Rho GTPase activating protein 19	protein-coding
156303	chr22	40530001	40530600	+	0	NA	intron (NM_001282661, intron 3 of 13)	AluSz|SINE|Alu	3527	NM_001318139	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
69701	chr14	98183571	98184100	+	0	NA	Intergenic	Intergenic	-205711	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
204863	chr7	5832401	5832600	+	0	NA	intron (NR_023382, intron 1 of 6)	AluSx|SINE|Alu	9340	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
71240	chr14	105184221	105184950	+	0	NA	Intergenic	Intergenic	-3262	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
17384	chr1	156599051	156599150	+	0	NA	5' UTR (NM_182679, exon 2 of 8)	5' UTR (NM_182679, exon 2 of 8)	2379	NM_182679	54865		NM_015590	ENSG00000160818	GPATCH4	GPATC4	G-patch domain containing 4 (gene/pseudogene)	protein-coding
145957	chr20	46199201	46199400	+	0	NA	intron (NM_021248, intron 8 of 11)	intron (NM_021248, intron 8 of 11)	80986	NR_126502	958		NM_001250	ENSG00000101017	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule	protein-coding
196729	chr6	45294371	45294730	+	0	NA	intron (NM_001350329, intron 2 of 10)	L1PB1|LINE|L1	-33767	NM_001015051	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
64764	chr14	34613671	34613830	+	0	NA	intron (NR_159357, intron 2 of 12)	AluYk3|SINE|Alu	16398	NR_159358	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
173948	chr4	25864321	25864650	+	0	NA	promoter-TSS (NM_001297594)	promoter-TSS (NM_001297594)	-919	NM_001297592	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
211810	chr7	107897171	107897580	+	0	NA	intron (NM_001289750, intron 2 of 11)	MIR|SINE|MIR	6192	NM_000108	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
90208	chr17	489601	490300	+	0	NA	Intergenic	CpG	-44010	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
54486	chr12	92046251	92046680	+	0	NA	intron (NR_132341, intron 1 of 4)	AluJo|SINE|Alu	95248	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
180417	chr5	10375121	10376200	+	0	NA	intron (NM_001270661, intron 1 of 22)	LTR12C|LTR|ERV1	21965	NM_001270661	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
43585	chr11	83116171	83116330	+	0	NA	Intergenic	MIRb|SINE|MIR	-40881	NM_001346414	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
166620	chr3	119468251	119470280	+	0	NA	intron (NR_024265, intron 1 of 10)	CpG	302	NM_152305	56983		NM_152305	ENSG00000163389	POGLUT1	C3orf9|CLP46|KDELCL1|KTELC1|LGMD2Z|LGMDR21|MDS010|MDSRP|Rumi|hCLP46	protein O-glucosyltransferase 1	protein-coding
165241	chr3	73027851	73028280	+	0	NA	intron (NM_001318025, intron 2 of 7)	AluSx|SINE|Alu	31254	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
130363	chr2	85058251	85058550	+	0	NA	3' UTR (NM_020122, exon 7 of 7)	3' UTR (NM_020122, exon 7 of 7)	8947	NR_146453	100996478		NR_146453	ENSG00000260840	LINC01964	-	long intergenic non-protein coding RNA 1964	ncRNA
42610	chr11	72110701	72111230	+	0	NA	TTS (NM_001145308)	TTS (NM_001145308)	1267	NM_001278494	25906		NM_014042	ENSG00000110200	ANAPC15	APC15|C11orf51|HSPC020	anaphase promoting complex subunit 15	protein-coding
11107	chr1	86362551	86363050	+	0	NA	intron (NM_020729, intron 10 of 17)	AluSx1|SINE|Alu	-5113	NR_107010	102465842		NR_107010	ENSG00000278281	MIR7856	hsa-mir-7856	microRNA 7856	ncRNA
128857	chr2	63882701	63882900	+	0	NA	intron (NM_001377529, intron 6 of 11)	intron (NM_001377529, intron 6 of 11)	40904	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
82772	chr16	21436171	21436730	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-1995	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
2992	chr1	12021401	12021800	+	0	NA	intron (NM_021933, intron 1 of 9)	MIR|SINE|MIR	2102	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
76132	chr15	72533851	72533950	+	0	NA	intron (NM_005744, intron 2 of 13)	AluJr|SINE|Alu	-53317	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
101036	chr17	64792721	64793380	+	0	NA	intron (NR_024386, intron 7 of 10)	intron (NR_024386, intron 7 of 10)	-11051	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
132065	chr2	101256151	101256450	+	0	NA	intron (NM_017546, intron 1 of 6)	intron (NM_017546, intron 1 of 6)	3414	NM_017546	55571		NM_017546	ENSG00000158435	CNOT11	C2orf29|C40	CCR4-NOT transcription complex subunit 11	protein-coding
56369	chr12	113154351	113154950	+	0	NA	intron (NM_001144872, intron 5 of 7)	CpG-6003	4527	NR_106956	102466222		NR_106956	ENSG00000276908	MIR7106	hsa-mir-7106	microRNA 7106	ncRNA
145607	chr20	44641771	44643130	+	0	NA	intron (NR_136160, intron 1 of 10)	intron (NR_136160, intron 1 of 10)	9249	NM_000022	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
38280	chr11	43307251	43307750	+	0	NA	Intergenic	Intergenic	-4496	NM_001142930	8539		NM_006595	ENSG00000166181	API5	AAC-11|AAC11	apoptosis inhibitor 5	protein-coding
30978	chr10	87931101	87931900	+	0	NA	intron (NM_001304717, intron 5 of 9)	L3|LINE|CR1	67875	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
180591	chr5	14992601	14994180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-121612	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
190255	chr5	178839401	178839630	+	0	NA	Intergenic	Intergenic	-20438	NM_058230	117608		NM_058230	ENSG00000178338	ZNF354B	KID2	zinc finger protein 354B	protein-coding
6254	chr1	27562171	27562530	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	41144	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
26988	chr10	26782101	26782300	+	0	NA	intron (NR_145410, intron 2 of 11)	HERVL40-int|LTR|ERVL	78758	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
89477	chr16	89105371	89105730	+	0	NA	intron (NR_147928, intron 4 of 11)	intron (NR_147928, intron 4 of 11)	11698	NM_001284316	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
93451	chr17	18679651	18679950	+	0	NA	intron (NM_001368134, intron 3 of 3)	intron (NM_001368134, intron 3 of 3)	2514	NM_001368135	2310		NM_001368134	ENSG00000240445	FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B	protein-coding
91393	chr17	4588421	4588880	+	0	NA	intron (NM_001375361, intron 1 of 6)	intron (NM_001375361, intron 1 of 6)	4121	NM_001375361	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
83797	chr16	28805621	28805900	+	0	NA	Intergenic	AluSx|SINE|Alu	-17288	NM_148414	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
171969	chr4	907251	907350	+	0	NA	intron (NM_001318134, intron 1 of 24)	intron (NM_001318134, intron 1 of 24)	25016	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
152518	chr22	20962771	20962930	+	0	NA	intron (NR_110537, intron 1 of 1)	intron (NR_110537, intron 1 of 1)	-2322	NM_001018060	150209		NM_144704	ENSG00000183773	AIFM3	AIFL	apoptosis inducing factor mitochondria associated 3	protein-coding
220312	chr8	98558171	98558330	+	0	NA	intron (NM_001256312, intron 10 of 12)	intron (NM_001256312, intron 10 of 12)	131292	NM_020697	3788		NM_020697	ENSG00000156486	KCNS2	KV9.2	potassium voltage-gated channel modifier subfamily S member 2	protein-coding
112598	chr19	6720401	6720880	+	0	NA	promoter-TSS (NM_000064)	promoter-TSS (NM_000064)	10	NM_000064	718		NM_000064	ENSG00000125730	C3	AHUS5|ARMD9|ASP|C3a|C3b|CPAMD1|HEL-S-62p	complement C3	protein-coding
26239	chr10	14598601	14599530	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	5336	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
33334	chr10	116740551	116740650	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	1966	NM_025015	259217		NM_025015	ENSG00000165868	HSPA12A	-	heat shock protein family A (Hsp70) member 12A	protein-coding
32854	chr10	110065251	110066000	+	0	NA	intron (NM_016824, intron 1 of 14)	AluSz|SINE|Alu	-57244	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
88919	chr16	87820121	87820580	+	0	NA	Intergenic	Intergenic	14310	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
4431	chr1	21279921	21280680	+	0	NA	promoter-TSS (NM_001113347)	promoter-TSS (NM_001113347)	-685	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
77862	chr15	88898721	88898980	+	0	NA	3' UTR (NM_005928, exon 8 of 8)	3' UTR (NM_005928, exon 8 of 8)	-3306	NM_178232	145864		NM_178232	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
210185	chr7	98867321	98867780	+	0	NA	intron (NM_001134450, intron 1 of 7)	intron (NM_001134450, intron 1 of 7)	2464	NM_152913	222865		NM_152913	ENSG00000166448	TMEM130	-	transmembrane protein 130	protein-coding
34078	chr10	125048121	125048380	+	0	NA	intron (NM_001321013, intron 1 of 9)	intron (NM_001321013, intron 1 of 9)	-15380	NR_036178	100423041		NR_036178	ENSG00000264572	MIR4296	-	microRNA 4296	ncRNA
30741	chr10	84179101	84180050	+	0	NA	intron (NM_207373, intron 2 of 2)	intron (NM_207373, intron 2 of 2)	5774	NM_207373	387695		NM_207373	ENSG00000188373	GPR15LG	AP-57|AP57|C10orf99|CSBF|GPR15L|UNQ1833	G protein-coupled receptor 15 ligand	protein-coding
169524	chr3	170132451	170132630	+	0	NA	intron (NM_001308116, intron 7 of 14)	MLT1A|LTR|ERVL-MaLR	49193	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
207165	chr7	43597351	43597650	+	0	NA	intron (NM_004760, intron 2 of 6)	AluSq|SINE|Alu	14392	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
57837	chr12	123247671	123248030	+	0	NA	intron (NM_001194995, intron 1 of 2)	AluY|SINE|Alu	14106	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
39392	chr11	60446421	60447150	+	0	NA	intron (NM_023945, intron 4 of 4)	intron (NM_023945, intron 4 of 4)	-9024	NM_021950	931		NM_021950	ENSG00000156738	MS4A1	B1|Bp35|CD20|CVID5|FMC7|LEU-16|S7	membrane spanning 4-domains A1	protein-coding
3418	chr1	15823771	15823930	+	0	NA	Intergenic	AluSq2|SINE|Alu	-16151	NM_001089591	440567		NM_001089591	ENSG00000233954	UQCRHL	hCG25371	ubiquinol-cytochrome c reductase hinge protein like	protein-coding
68575	chr14	89428471	89428930	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	11346	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
117798	chr19	29857771	29858650	+	0	NA	Intergenic	Intergenic	46219	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
157718	chr22	46487551	46487800	+	0	NA	intron (NM_001378328, intron 1 of 34)	intron (NM_001378328, intron 1 of 34)	49945	NM_014246	9620		NM_014246	ENSG00000075275	CELSR1	ADGRC1|CDHF9|FMI2|HFMI2|LMPHM9|ME2	cadherin EGF LAG seven-pass G-type receptor 1	protein-coding
109338	chr19	607171	607530	+	0	NA	intron (NM_001194, intron 3 of 7)	intron (NM_001194, intron 3 of 7)	17469	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
81636	chr16	10882751	10883050	+	0	NA	intron (NM_001379334, intron 1 of 19)	AluSq2|SINE|Alu	3933	NM_001379334	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
99291	chr17	49787721	49788700	+	0	NA	promoter-TSS (NM_007067)	promoter-TSS (NM_007067)	-471	NM_001199158	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
123982	chr19	55437401	55438280	+	0	NA	intron (NM_001145176, intron 2 of 3)	MSR1|Satellite|Satellite	5023	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
227429	chr9	89930171	89930330	+	0	NA	Intergenic	Intergenic	-39166	NR_109791	101927847		NR_109791		LOC101927847	-	uncharacterized LOC101927847	ncRNA
29566	chr10	71667021	71667480	+	0	NA	intron (NM_001171931, intron 13 of 24)	intron (NM_001171931, intron 13 of 24)	52528	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
123213	chr19	52748401	52748680	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-13486	NM_001161500	81856		NM_030972	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
148122	chr20	63452701	63453430	+	0	NA	intron (NM_001382235, intron 1 of 16)	intron (NM_001382235, intron 1 of 16)	19590	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
136622	chr2	179022651	179022950	+	0	NA	intron (NM_173648, intron 2 of 23)	intron (NM_173648, intron 2 of 23)	27337	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
145365	chr20	41156721	41157750	+	0	NA	intron (NM_182811, intron 1 of 31)	(TG)n|Simple_repeat|Simple_repeat	-11788	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
1661	chr1	3887071	3887230	+	0	NA	Intergenic	Intergenic	13122	NM_207356	339448		NM_207356	ENSG00000198912	C1orf174	-	chromosome 1 open reading frame 174	protein-coding
184599	chr5	103132951	103133050	+	0	NA	intron (NM_001276277, intron 2 of 30)	intron (NM_001276277, intron 2 of 30)	12699	NM_001276277	23262		NM_015216	ENSG00000145725	PPIP5K2	CFAP160|DFNB100|HISPPD1|IP7K2|VIP2	diphosphoinositol pentakisphosphate kinase 2	protein-coding
48885	chr12	12486371	12486930	+	0	NA	intron (NM_030640, intron 5 of 6)	intron (NM_030640, intron 5 of 6)	76213	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
93110	chr17	17685551	17686680	+	0	NA	intron (NM_030665, intron 1 of 5)	L2b|LINE|L2	4657	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
186107	chr5	134129321	134130270	+	0	NA	intron (NM_001366502, intron 1 of 7)	intron (NM_001366502, intron 1 of 7)	6177	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
198936	chr6	110421951	110422050	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-6425	NR_160546	8528		NM_003649	ENSG00000203797	DDO	DASOX|DASPO|DDO-1|DDO-2	D-aspartate oxidase	protein-coding
229627	chr9	124020421	124020680	+	0	NA	intron (NM_004789, intron 3 of 4)	intron (NM_004789, intron 3 of 4)	8782	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
42041	chr11	67447471	67448000	+	0	NA	Intergenic	LTR8|LTR|ERV1	-3914	NM_001018070	57175		NM_020441	ENSG00000172725	CORO1B	CORONIN-2	coronin 1B	protein-coding
199226	chr6	111813421	111814330	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-53958	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
60798	chr13	45327371	45328480	+	0	NA	Intergenic	Intergenic	8522	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
61096	chr13	48426321	48426580	+	0	NA	intron (NM_005767, intron 1 of 6)	intron (NM_005767, intron 1 of 6)	458	NM_001377316	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
161755	chr3	44712451	44712850	+	0	NA	promoter-TSS (NM_033210)	promoter-TSS (NM_033210)	7	NM_033210	91392		NM_033210	ENSG00000196653	ZNF502	-	zinc finger protein 502	protein-coding
216608	chr8	22057271	22058180	+	0	NA	promoter-TSS (NM_001323396)	promoter-TSS (NM_001323396)	-139	NM_001323396	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
140338	chr2	232554401	232554830	+	0	NA	intron (NM_001330202, intron 1 of 6)	intron (NM_001330202, intron 1 of 6)	3809	NM_001330202	9470		NM_004846	ENSG00000135930	EIF4E2	4E-LP|4EHP|EIF4EL3|IF4e|h4EHP	eukaryotic translation initiation factor 4E family member 2	protein-coding
159488	chr3	14176671	14176950	+	0	NA	intron (NM_001354729, intron 1 of 15)	intron (NM_001354729, intron 1 of 15)	1791	NR_148951	7508		NM_004628	ENSG00000154767	XPC	RAD4|XP3|XPCC|p125	XPC complex subunit, DNA damage recognition and repair factor	protein-coding
8058	chr1	38870151	38870450	+	0	NA	intron (NR_037636, intron 1 of 3)	AluJb|SINE|Alu	3048	NM_012333	26292		NM_012333	ENSG00000214114	MYCBP	AMY-1	MYC binding protein	protein-coding
56167	chr12	111409071	111410180	+	0	NA	intron (NM_005475, intron 1 of 7)	intron (NM_005475, intron 1 of 7)	3702	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
15972	chr1	151908171	151908330	+	0	NA	intron (NM_053055, intron 1 of 5)	MER61-int|LTR|ERV1	1261	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
11309	chr1	89299771	89300130	+	0	NA	Intergenic	Intergenic	-9588	NR_077244	729930		NR_077244		LOC729930	-	intraflagellar transport associated protein pseudogene	pseudo
15301	chr1	149848451	149848550	+	0	NA	Intergenic	Intergenic	2273	NR_036461	337873		NR_036461	ENSG00000261716	H2BC20P	H2B/t|HIST2H2BC|HIST2H2BD|LETN	H2B clustered histone 20, pseudogene	pseudo
163183	chr3	50201121	50201580	+	0	NA	Intergenic	Intergenic	-3921	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
99562	chr17	50424601	50424800	+	0	NA	Intergenic	Intergenic	-1458	NM_001288968	80221		NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
223089	chr8	143420801	143421600	+	0	NA	Intergenic	Intergenic	3521	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
103964	chr17	79936451	79937600	+	0	NA	3' UTR (NM_001271844, exon 8 of 8)	3' UTR (NM_001271844, exon 8 of 8)	-10300	NR_110850	101928766		NR_110850	ENSG00000262585	LINC01979	-	long intergenic non-protein coding RNA 1979	ncRNA
82434	chr16	16324021	16324350	+	0	NA	promoter-TSS (NR_106766).2	promoter-TSS (NR_106766).2	-403	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
102352	chr17	75507551	75507650	+	0	NA	exon (NM_020753, exon 4 of 20)	exon (NM_020753, exon 4 of 20)	2290	NM_001142643	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
216958	chr8	22999021	23000450	+	0	NA	5' UTR (NM_015178, exon 1 of 10)	5' UTR (NM_015178, exon 1 of 10)	187	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
230134	chr9	127730701	127730900	+	0	NA	TTS (NM_001252023)	TTS (NM_001252023)	4494	NM_001252018	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
128351	chr2	54941501	54941700	+	0	NA	intron (NM_001039753, intron 27 of 40)	intron (NM_001039753, intron 27 of 40)	68672	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133551	chr2	120553051	120553150	+	0	NA	Intergenic	Intergenic	-86751	NR_027181	84931		NM_032845	ENSG00000280409	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
118304	chr19	35449021	35449280	+	0	NA	intron (NM_005306, intron 2 of 2)	intron (NM_005306, intron 2 of 2)	893	NM_001370087	2867		NM_005306	ENSG00000126262	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
165823	chr3	105829851	105830980	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	37176	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
21685	chr1	206717221	206717800	+	0	NA	intron (NM_032960, intron 1 of 9)	L3|LINE|CR1	32605	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
82252	chr16	15093471	15094830	+	0	NA	promoter-TSS (NR_125434)	promoter-TSS (NR_125434)	122	NM_018427	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
233262	chr9	137280801	137281930	+	0	NA	3' UTR (NM_017723, exon 2 of 2)	3' UTR (NM_017723, exon 2 of 2)	3639	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
119695	chr19	41117401	41118130	+	0	NA	intron (NR_135528, intron 3 of 9)	intron (NR_135528, intron 3 of 9)	3333	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
159615	chr3	15265921	15266380	+	0	NA	intron (NM_004844, intron 4 of 8)	intron (NM_004844, intron 4 of 8)	11966	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
166174	chr3	111673271	111673430	+	0	NA	Intergenic	Intergenic	-1326	NM_153268	257068		NM_153268	ENSG00000240891	PLCXD2	-	phosphatidylinositol specific phospholipase C X domain containing 2	protein-coding
57014	chr12	120599151	120599450	+	0	NA	Intergenic	MIRc|SINE|MIR	-17898	NM_015918	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
208530	chr7	70645821	70646480	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-485994	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
118031	chr19	34217771	34219180	+	0	NA	intron (NR_169262, intron 6 of 7)	intron (NR_169262, intron 6 of 7)	-36079	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
179993	chr5	902871	903550	+	0	NA	intron (NM_001166260, intron 5 of 8)	LTR13|LTR|ERVK	10326	NM_004237	9319		NM_004237	ENSG00000071539	TRIP13	16E1BP|MVA3|OOMD9|OZEMA9	thyroid hormone receptor interactor 13	protein-coding
224650	chr9	20683601	20685080	+	0	NA	promoter-TSS (NM_001375568)	promoter-TSS (NM_001375568)	81	NM_001375568	54914		NM_017794	ENSG00000188352	FOCAD	KIAA1797|SCOLIV	focadhesin	protein-coding
75943	chr15	70265521	70265780	+	0	NA	Intergenic	Intergenic	-167733	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
74038	chr15	52295251	52295750	+	0	NA	intron (NM_018728, intron 1 of 40)	CpG	304	NM_018728	55930		NM_018728	ENSG00000128833	MYO5C	-	myosin VC	protein-coding
238583	chrX	153880251	153880830	+	0	NA	promoter-TSS (NR_130768)	promoter-TSS (NR_130768)	-132	NR_130768	100996465		NM_001039768	ENSG00000273769	L1CAM-AS1	LCA10|LCAP	L1CAM antisense RNA 1	ncRNA
223383	chr8	143908571	143909130	+	0	NA	Intergenic	LTR47B3|LTR|ERVL	-30383	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
34103	chr10	125895571	125897000	+	0	NA	promoter-TSS (NM_001363549)	promoter-TSS (NM_001363549)	-250	NM_001350939	92565		NM_145235	ENSG00000203780	FANK1	HSD13	fibronectin type III and ankyrin repeat domains 1	protein-coding
124156	chr19	56091721	56092150	+	0	NA	intron (NM_001002836, intron 2 of 2)	(GCCGAA)n|Simple_repeat|Simple_repeat	25251	NR_110741	101928886		NR_110741	ENSG00000267522	LINC01864	-	long intergenic non-protein coding RNA 1864	ncRNA
73374	chr15	42499171	42499330	+	0	NA	intron (NM_130798, intron 1 of 6)	AluSp|SINE|Alu	3616	NM_003825	8773		NM_003825	ENSG00000092531	SNAP23	HsT17016|SNAP-23|SNAP23A|SNAP23B	synaptosome associated protein 23	protein-coding
121475	chr19	47107221	47108580	+	0	NA	intron (NM_015168, intron 2 of 14)	intron (NM_015168, intron 2 of 14)	5876	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
128678	chr2	61476771	61477330	+	0	NA	TTS (NM_003400)	TTS (NM_003400)	-5963	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
235508	chrX	47186821	47187280	+	0	NA	TTS (NM_001204467)	TTS (NM_001204467)	-3797	NM_153280	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
149786	chr21	34908501	34908800	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-19951	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
35780	chr11	2167601	2167800	+	0	NA	intron (NM_000360, intron 5 of 12)	MIRc|SINE|MIR	4115	NM_199293	7054		NM_000360	ENSG00000180176	TH	DYT14|DYT5b|TYH	tyrosine hydroxylase	protein-coding
101584	chr17	68073101	68074650	+	0	NA	Intergenic	AluJb|SINE|Alu	-27680	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
193955	chr6	31683951	31684950	+	0	NA	Intergenic	AluJb|SINE|Alu	-4077	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
137235	chr2	191677391	191679700	+	0	NA	non-coding (NR_045623, exon 1 of 7)	non-coding (NR_045623, exon 1 of 7)	409	NM_001031716	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
166402	chr3	113560801	113561230	+	0	NA	intron (NM_001322297, intron 1 of 24)	intron (NM_001322297, intron 1 of 24)	28460	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
202704	chr6	158815901	158816430	+	0	NA	intron (NM_003379, intron 1 of 12)	L1MB3|LINE|L1	-1814	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
218752	chr8	58897601	58897830	+	0	NA	intron (NM_014729, intron 3 of 8)	intron (NM_014729, intron 3 of 8)	221432	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
19900	chr1	183956251	183957280	+	0	NA	intron (NM_015101, intron 6 of 11)	intron (NM_015101, intron 6 of 11)	80963	NM_015101	23127		NM_015101	ENSG00000198756	COLGALT2	C1orf17|ColGalT 2|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
134061	chr2	131490971	131491560	+	0	NA	promoter-TSS (NR_039945)	promoter-TSS (NR_039945)	-29	NR_039945	100616378		NR_039945	ENSG00000284149	MIR4784	-	microRNA 4784	ncRNA
91023	chr17	2810271	2811400	+	0	NA	intron (NM_001100398, intron 2 of 23)	L3|LINE|CR1	14397	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
108514	chr18	74290101	74290480	+	0	NA	intron (NM_001914, intron 1 of 5)	AluSz6|SINE|Alu	1673	NM_148923	1528		NM_001914	ENSG00000166347	CYB5A	CYB5|MCB5|METAG	cytochrome b5 type A	protein-coding
224900	chr9	32522521	32523030	+	0	NA	intron (NM_014314, intron 1 of 17)	LOR1-int|LTR|ERV1	3421	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
18952	chr1	168537551	168537650	+	0	NA	Intergenic	L1P1|LINE|L1	6397	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
24330	chr1	237915551	237915650	+	0	NA	intron (NR_027247, intron 8 of 11)	LTR13|LTR|ERVK	-24678	NM_021186	57829		NM_021186	ENSG00000116996	ZP4	ZBP|ZP1|ZP1B|ZPB|ZPB2|Zp-4	zona pellucida glycoprotein 4	protein-coding
14567	chr1	145017721	145018180	+	0	NA	intron (NM_001385227, intron 2 of 8)	intron (NM_001385227, intron 2 of 8)	-76346	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
226374	chr9	70261601	70262000	+	0	NA	intron (NM_015110, intron 1 of 24)	L2|LINE|L2	2822	NM_015110	23137		NM_015110	ENSG00000198887	SMC5	ATELS2|SMC5L1	structural maintenance of chromosomes 5	protein-coding
127444	chr2	42181421	42181750	+	0	NA	intron (NM_019063, intron 1 of 22)	AluSz|SINE|Alu	-11354	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
231513	chr9	131411271	131411430	+	0	NA	intron (NM_013318, intron 1 of 31)	AluY|SINE|Alu	17264	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
193605	chr6	30727721	30727980	+	0	NA	3' UTR (NM_005803, exon 13 of 13)	3' UTR (NM_005803, exon 13 of 13)	6212	NM_001293215	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
111007	chr19	3047731	3048650	+	0	NA	promoter-TSS (NM_001144761)	promoter-TSS (NM_001144761)	-555	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
230616	chr9	128628071	128628230	+	0	NA	intron (NM_001375310, intron 52 of 57)	intron (NM_001375310, intron 52 of 57)	28700	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
20182	chr1	193057751	193060280	+	0	NA	promoter-TSS (NM_001331020)	promoter-TSS (NM_001331020)	345	NM_001199263	51377		NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
97557	chr17	44081021	44081480	+	0	NA	intron (NM_001382393, intron 20 of 26)	AluSq|SINE|Alu	10339	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
130110	chr2	74528951	74530400	+	0	NA	promoter-TSS (NM_181575)	promoter-TSS (NM_181575)	31	NR_126510	550		NM_181575	ENSG00000115307	AUP1	-	AUP1 lipid droplet regulating VLDL assembly factor	protein-coding
114687	chr19	13109401	13109600	+	0	NA	intron (NM_001136035, intron 11 of 16)	intron (NM_001136035, intron 11 of 16)	-6642	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
201928	chr6	151406071	151406780	+	0	NA	intron (NM_001271937, intron 9 of 10)	AluY|SINE|Alu	-14866	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
80503	chr16	2723571	2723930	+	0	NA	Intergenic	AluSz|SINE|Alu	-3526	NM_031948	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
154799	chr22	36860821	36861280	+	0	NA	promoter-TSS (NM_000631).2	promoter-TSS (NM_000631).2	44	NM_000631	4689		NM_000631	ENSG00000100365	NCF4	CGD3|NCF|P40PHOX|SH3PXD4	neutrophil cytosolic factor 4	protein-coding
114719	chr19	13168951	13169480	+	0	NA	Intergenic	Intergenic	18804	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
70938	chr14	104563651	104564210	+	0	NA	Intergenic	Intergenic	-15834	NM_001286399	400258		NM_001008404	ENSG00000184601	C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
144469	chr20	35604451	35605580	+	0	NA	intron (NR_119376, intron 4 of 42)	intron (NR_119376, intron 4 of 42)	2547	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
100786	chr17	64016101	64016780	+	0	NA	intron (NM_001099788, intron 1 of 5)	LTR16E1|LTR|ERVL	4193	NM_001099789	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
138815	chr2	216226071	216226500	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	9396	NR_037701	150967		NM_001199924	ENSG00000260804	LINC01963	PKI55	long intergenic non-protein coding RNA 1963	ncRNA
147416	chr20	58877821	58878280	+	0	NA	intron (NR_126334, intron 3 of 4)	intron (NR_126334, intron 3 of 4)	-10363	NR_132273	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
202603	chr6	158715701	158716450	+	0	NA	intron (NM_001318745, intron 6 of 14)	intron (NM_001318745, intron 6 of 14)	48678	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
36172	chr11	3164751	3165780	+	0	NA	promoter-TSS (NM_001144063)	promoter-TSS (NM_001144063)	45	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
117766	chr19	29690701	29691400	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	24006	NM_001282929	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
221251	chr8	122733501	122734280	+	0	NA	Intergenic	Intergenic	-39784	NR_126348	104266958		NR_126348		LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA
170248	chr3	184233021	184233680	+	0	NA	promoter-TSS (NM_001320373)	promoter-TSS (NM_001320373)	-66	NM_001320373	90113		NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
211204	chr7	102619371	102619880	+	0	NA	Intergenic	AluSz|SINE|Alu	-2867	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
9125	chr1	45346371	45347280	+	0	NA	intron (NM_007170, intron 8 of 10)	intron (NM_007170, intron 8 of 10)	-6355	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
115522	chr19	15434921	15435180	+	0	NA	intron (NM_001371589, intron 5 of 12)	AluSc8|SINE|Alu	-2289	NM_001371603	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
193861	chr6	31558321	31559500	+	0	NA	TTS (NM_001144961).5	TTS (NM_001144961).5	11302	NM_005007	4795		NM_005007	ENSG00000204498	NFKBIL1	IKBL|NFKBIL	NFKB inhibitor like 1	protein-coding
121562	chr19	47261851	47262480	+	0	NA	intron (NM_015603, intron 5 of 11)	MLT1J|LTR|ERVL-MaLR	5640	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
54295	chr12	89350901	89351850	+	0	NA	intron (NM_001946, intron 1 of 2)	intron (NM_001946, intron 1 of 2)	1126	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
38466	chr11	45665401	45666450	+	0	NA	promoter-TSS (NM_003654)	promoter-TSS (NM_003654)	-303	NM_003654	8534		NM_003654	ENSG00000175264	CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate sulfotransferase 1	protein-coding
131885	chr2	98732751	98733130	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-1808	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
73	chr1	288501	289030	+	0	NA	Intergenic	L2b|LINE|L2	-82168	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
65555	chr14	51933751	51934050	+	0	NA	intron (NM_053064, intron 2 of 3)	L2|LINE|L2	-15329	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
187518	chr5	142422371	142422530	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	97157	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
70289	chr14	101764451	101764750	+	0	NA	intron (NM_001352915, intron 2 of 14)	intron (NM_001352915, intron 2 of 14)	2230	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
202953	chr6	161101651	161101750	+	0	NA	intron (NM_005922, intron 17 of 26)	intron (NM_005922, intron 17 of 26)	60282	NR_024277	79992		NM_024929		AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1	ncRNA
86499	chr16	67035271	67035430	+	0	NA	intron (NM_001368707, intron 2 of 4)	AluSx1|SINE|Alu	6201	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
90186	chr17	382421	382680	+	0	NA	Intergenic	Intergenic	-27775	NM_001013672	400566		NM_001013672	ENSG00000187624	LIAT1	C17orf97|CK20	ligand of ATE1	protein-coding
59698	chr13	29588571	29589330	+	0	NA	intron (NM_003045, intron 1 of 12)	intron (NM_003045, intron 1 of 12)	6738	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
40427	chr11	64182421	64182700	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2712	NM_001282652	10963		NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
2263	chr1	8919251	8919750	+	0	NA	Intergenic	Intergenic	-26368	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
58431	chr12	131931401	131931600	+	0	NA	intron (NM_025215, intron 2 of 5)	AluSx|SINE|Alu	2224	NM_001002020	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
54260	chr12	87661701	87662200	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-106862	NR_149056	110806294		NR_149056		LINC02258	-	long intergenic non-protein coding RNA 2258	ncRNA
110442	chr19	1983001	1983400	+	0	NA	Intergenic	AluY|SINE|Alu	-28651	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
148297	chr20	63722621	63723100	+	0	NA	intron (NM_181485, intron 2 of 6)	AluSx1|SINE|Alu	-12841	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
94477	chr17	29271951	29272530	+	0	NA	intron (NM_020772, intron 2 of 3)	AluY|SINE|Alu	21908	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
172810	chr4	3038301	3038800	+	0	NA	intron (NM_182982, intron 15 of 15)	intron (NM_182982, intron 15 of 15)	35964	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
48770	chr12	11576101	11576400	+	0	NA	Intergenic	LTR40c|LTR|ERVL	28220	NR_033890	338817		NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
228689	chr9	107776451	107776550	+	0	NA	Intergenic	Intergenic	-286731	NM_001314052	9314		NM_004235	ENSG00000136826	KLF4	EZF|GKLF	KLF transcription factor 4	protein-coding
123934	chr19	55373671	55374180	+	0	NA	Intergenic	Intergenic	-2901	NM_139172	147744		NM_139172	ENSG00000160472	TMEM190	MDAC1	transmembrane protein 190	protein-coding
36324	chr11	3869821	3870350	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	14023	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
11869	chr1	93080351	93080830	+	0	NA	intron (NM_001164393, intron 1 of 12)	intron (NM_001164393, intron 1 of 12)	1307	NM_007358	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
188847	chr5	159204421	159204880	+	0	NA	intron (NM_001199380, intron 1 of 10)	AluSx4|SINE|Alu	2998	NM_001199382	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
15861	chr1	151443801	151444400	+	0	NA	intron (NM_015100, intron 1 of 18)	MER119|DNA|hAT-Charlie	-1895	NM_207171	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
27207	chr10	28581651	28582150	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	48782	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
166594	chr3	119145501	119145900	+	0	NA	promoter-TSS (NM_152539)	promoter-TSS (NM_152539)	320	NM_001353322	152404		NM_152538	ENSG00000144847	IGSF11	BT-IgSF|BTIGSF|CT119|CXADRL1|Igsf13|VSIG3	immunoglobulin superfamily member 11	protein-coding
88612	chr16	85607371	85608150	+	0	NA	Intergenic	Intergenic	-3649	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
40568	chr11	64352401	64352780	+	0	NA	intron (NM_032251, intron 19 of 26)	intron (NM_032251, intron 19 of 26)	-6572	NM_001300802	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
23229	chr1	227748201	227748800	+	0	NA	intron (NR_136655, intron 2 of 5)	intron (NR_136655, intron 2 of 5)	12805	NM_001323934	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
9210	chr1	45623921	45624180	+	0	NA	promoter-TSS (NM_001190182)	promoter-TSS (NM_001190182)	4	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
15168	chr1	149058251	149058350	+	0	NA	intron (NM_001277444, intron 21 of 24)	intron (NM_001277444, intron 21 of 24)	24011	NM_001277444	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
152454	chr22	20670701	20671180	+	0	NA	Intergenic	CpG	-18615	NR_024592	266697		NR_024592		POM121L4P	POM121L1|POM121L1P	POM121 transmembrane nucleoporin like 4, pseudogene	pseudo
102250	chr17	75264401	75265230	+	0	NA	intron (NM_015971, intron 4 of 4)	AluSq|SINE|Alu	-2452	NM_001172704	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
221619	chr8	125648051	125648830	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	216231	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
233360	chr9	137463521	137464150	+	0	NA	intron (NM_001098537, intron 28 of 34)	intron (NM_001098537, intron 28 of 34)	-4501	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228560	chr9	101573501	101574180	+	0	NA	intron (NM_133445, intron 8 of 8)	intron (NM_133445, intron 8 of 8)	21129	NM_147180	5535		NM_147180	ENSG00000188386	PPP3R2	PPP3RL	protein phosphatase 3 regulatory subunit B, beta	protein-coding
112062	chr19	5152221	5152850	+	0	NA	3' UTR (NM_015015, exon 23 of 23)	3' UTR (NM_015015, exon 23 of 23)	183422	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
113631	chr19	10327551	10328030	+	0	NA	intron (NM_133452, intron 3 of 12)	intron (NM_133452, intron 3 of 12)	5739	NM_133452	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
69537	chr14	96499951	96500150	+	0	NA	Intergenic	Intergenic	2276	NR_122121	730202		NR_122121		PAPOLA-DT	-	PAPOLA divergent transcript	ncRNA
15400	chr1	150233901	150235400	+	0	NA	promoter-TSS (NM_001136479)	promoter-TSS (NM_001136479)	28	NM_001136479	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
158725	chr3	8571371	8571530	+	0	NA	promoter-TSS (NR_024065)	promoter-TSS (NR_024065)	-332	NR_024065	29931		NM_013343		LINC00312	ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312	long intergenic non-protein coding RNA 312	ncRNA
41973	chr11	67367751	67367850	+	0	NA	intron (NM_001166212, intron 1 of 2)	intron (NM_001166212, intron 1 of 2)	5798	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
40739	chr11	64827671	64828200	+	0	NA	intron (NM_017525, intron 30 of 36)	intron (NM_017525, intron 30 of 36)	-16641	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
79443	chr16	710871	711030	+	0	NA	Intergenic	Intergenic	-4168	NM_024042	79006		NM_024042	ENSG00000103260	METRN	C16orf23|c380A1.2	meteorin, glial cell differentiation regulator	protein-coding
215074	chr7	154135471	154135730	+	0	NA	intron (NM_130797, intron 1 of 25)	intron (NM_130797, intron 1 of 25)	-75030	NR_136254	101929998		NR_136254		LOC101929998	-	uncharacterized LOC101929998	ncRNA
169946	chr3	179071201	179073350	+	0	NA	promoter-TSS (NM_022470)	promoter-TSS (NM_022470)	238	NM_001375828	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
80605	chr16	2953751	2954530	+	0	NA	Intergenic	MLT1E|LTR|ERVL-MaLR	-10135	NM_001253726	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
122507	chr19	49588321	49589300	+	0	NA	intron (NM_000951, intron 5 of 6)	intron (NM_000951, intron 5 of 6)	-2372	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
73122	chr15	41279901	41280500	+	0	NA	3' UTR (NM_007236, exon 7 of 7)	3' UTR (NM_007236, exon 7 of 7)	-3790	NR_152822	729082		NR_026757	ENSG00000247556	OIP5-AS1	cyrano|linc-OIP5	OIP5 antisense RNA 1	ncRNA
16745	chr1	155281351	155281450	+	0	NA	intron (NM_020897, intron 1 of 7)	AluSx1|SINE|Alu	3937	NM_020897	57657		NM_020897	ENSG00000143630	HCN3	-	hyperpolarization activated cyclic nucleotide gated potassium channel 3	protein-coding
169690	chr3	172044451	172045030	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	4209	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
38855	chr11	47334851	47335400	+	0	NA	exon (NM_000256, exon 26 of 34)	exon (NM_000256, exon 26 of 34)	17577	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
184179	chr5	95818341	95818950	+	0	NA	intron (NM_001118890, intron 1 of 2)	L2a|LINE|L2	4081	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
14428	chr1	144369751	144370600	+	0	NA	Intergenic	Intergenic	3484	NM_001164261	645142		NM_001164261	ENSG00000289549	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding
160263	chr3	25657301	25657900	+	0	NA	intron (NM_001330700, intron 1 of 35)	intron (NM_001330700, intron 1 of 35)	6772	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
129368	chr2	68787871	68788180	+	0	NA	intron (NM_001364819, intron 4 of 10)	intron (NM_001364819, intron 4 of 10)	13115	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
135341	chr2	160390171	160390330	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	17632	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
177361	chr4	110268501	110268730	+	0	NA	Intergenic	L1MC1|LINE|L1	-70000	NM_024090	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
115277	chr19	14557751	14558800	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	13791	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
221787	chr8	127959471	127959930	+	0	NA	promoter-TSS (NR_031610)	promoter-TSS (NR_031610)	-933	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
2150	chr1	8398721	8399000	+	0	NA	intron (NM_001042682, intron 2 of 12)	L1ME3Cz|LINE|L1	24972	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
4415	chr1	21220371	21220530	+	0	NA	intron (NM_001397, intron 18 of 18)	AluJb|SINE|Alu	-43553	NM_001198802	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
230182	chr9	127792751	127792850	+	0	NA	Intergenic	L2b|LINE|L2	6766	NM_001261	1025		NM_001261	ENSG00000136807	CDK9	C-2k|CDC2L4|CTK1|PITALRE|TAK	cyclin dependent kinase 9	protein-coding
111750	chr19	4366701	4367380	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	23478	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
65653	chr14	52349701	52350100	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	35588	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
124203	chr19	56477301	56478650	+	0	NA	promoter-TSS (NM_022103)	promoter-TSS (NM_022103)	101	NR_036521	100128252		NM_198879	ENSG00000166770	ZNF667-AS1	MORT	ZNF667 antisense RNA 1 (head to head)	ncRNA
170537	chr3	186706101	186706500	+	0	NA	Intergenic	Intergenic	-11059	NM_001166451	3827		NM_000893	ENSG00000113889	KNG1	BDK|BK|HAE6|HK|HMWK|KNG	kininogen 1	protein-coding
199799	chr6	127186971	127187150	+	0	NA	intron (NM_032784, intron 4 of 4)	intron (NM_032784, intron 4 of 4)	68389	NM_032784	84870		NM_032784	ENSG00000146374	RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
46346	chr11	125625321	125626880	+	0	NA	promoter-TSS (NR_045205)	promoter-TSS (NR_045205)	-124	NM_001330428	1111		NM_001274	ENSG00000149554	CHEK1	CHK1|OZEMA21	checkpoint kinase 1	protein-coding
228717	chr9	109108971	109109330	+	0	NA	intron (NM_032012, intron 1 of 17)	intron (NM_032012, intron 1 of 17)	10797	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
212969	chr7	130969301	130970230	+	0	NA	intron (NR_109851, intron 4 of 5)	AluSx|SINE|Alu	56301	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
12777	chr1	109659571	109659730	+	0	NA	intron (NM_147148, intron 7 of 7)	intron (NM_147148, intron 7 of 7)	3551	NM_000850	2948		NM_000850	ENSG00000168765	GSTM4	GSTM4-4|GTM4	glutathione S-transferase mu 4	protein-coding
68673	chr14	90288671	90289230	+	0	NA	exon (NM_017970, exon 11 of 14)	exon (NM_017970, exon 11 of 14)	31011	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
96711	chr17	41578871	41579030	+	0	NA	Intergenic	Intergenic	-6891	NM_000226	3857		NM_000226	ENSG00000171403	KRT9	CK-9|EPPK|EPPK1|K9	keratin 9	protein-coding
58330	chr12	131395501	131395900	+	0	NA	Intergenic	(TGA)n|Simple_repeat|Simple_repeat	48230	NR_103736	338797		NM_001025466		LINC02370	-	long intergenic non-protein coding RNA 2370	ncRNA
101532	chr17	67859101	67859500	+	0	NA	intron (NM_182641, intron 2 of 27)	AluJo|SINE|Alu	33797	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
154226	chr22	31532071	31532580	+	0	NA	intron (NM_001007467, intron 4 of 32)	intron (NM_001007467, intron 4 of 32)	35789	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
72079	chr15	28904751	28905050	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	-16737	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
82506	chr16	17450421	17450680	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	20410	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
129396	chr2	68828721	68830030	+	0	NA	Intergenic	Intergenic	42022	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
8695	chr1	42145401	42146030	+	0	NA	Intergenic	MIRb|SINE|MIR	-7695	NM_007102	2981		NM_007102	ENSG00000044012	GUCA2B	GCAP-II|UGN	guanylate cyclase activator 2B	protein-coding
81102	chr16	4365571	4365930	+	0	NA	intron (NM_001351729, intron 9 of 27)	intron (NM_001351729, intron 9 of 27)	-6098	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
171189	chr3	195686401	195687750	+	0	NA	intron (NR_003265, intron 14 of 14)	intron (NR_003265, intron 14 of 14)	-1423	NR_122105	440993		NM_001013714		MIR570HG	LINC00969	MIR570 host gene	ncRNA
36968	chr11	11620751	11621300	+	0	NA	intron (NM_001363464, intron 1 of 9)	CpG	980	NM_198516	374378		NM_198516	ENSG00000110328	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
35875	chr11	2392251	2392580	+	0	NA	intron (NM_004356, intron 2 of 7)	intron (NM_004356, intron 2 of 7)	-8335	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
50379	chr12	47224651	47225450	+	0	NA	intron (NM_138371, intron 3 of 3)	AluSz6|SINE|Alu	-8607	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
239070	chrY	7317421	7317830	+	0	NA	intron (NR_028062, intron 2 of 7)	intron (NR_028062, intron 2 of 7)	43653	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
92183	chr17	7822401	7823150	+	0	NA	intron (NM_020877, intron 73 of 85)	L2a|LINE|L2	-17131	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
13981	chr1	120592871	120593430	+	0	NA	intron (NR_144516, intron 5 of 43)	intron (NR_144516, intron 5 of 43)	34465	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
139918	chr2	230757101	230757830	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	43917	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
178119	chr4	141484101	141484500	+	0	NA	Intergenic	AluY|SINE|Alu	-151683	NR_121625	100507639		NR_121625	ENSG00000248810	LINC02432	-	long intergenic non-protein coding RNA 2432	ncRNA
122886	chr19	50513351	50513680	+	0	NA	intron (NM_001114598, intron 1 of 6)	intron (NM_001114598, intron 1 of 6)	398	NM_001114598	554235		NM_001024656	ENSG00000204653	ASPDH	-	aspartate dehydrogenase domain containing	protein-coding
113709	chr19	10433621	10434080	+	0	NA	intron (NM_001111309, intron 1 of 14)	intron (NM_001111309, intron 1 of 14)	1415	NM_001111309	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
207985	chr7	55439601	55439800	+	0	NA	Intergenic	L2a|LINE|L2	74363	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
106720	chr18	23484901	23485800	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	-18120	NM_001276342	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
217802	chr8	33566051	33567750	+	0	NA	5' UTR (NM_024787, exon 1 of 6)	5' UTR (NM_024787, exon 1 of 6)	228	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
109523	chr19	850401	851130	+	0	NA	Intergenic	Intergenic	-1538	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
210965	chr7	101625171	101625330	+	0	NA	intron (NM_138403, intron 1 of 7)	MamTip2|DNA|hAT-Tip100	4046	NM_138403	93408		NM_138403	ENSG00000106436	MYL10	MYLC2PL|PLRLC	myosin light chain 10	protein-coding
37931	chr11	34245171	34245330	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	112760	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
53284	chr12	64385671	64385830	+	0	NA	intron (NM_001099676, intron 1 of 10)	LTR8|LTR|ERV1	5008	NM_001170633	115749		NM_001099676	ENSG00000185306	C12orf56	-	chromosome 12 open reading frame 56	protein-coding
188525	chr5	155774771	155775130	+	0	NA	Intergenic	Intergenic	-552214	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
92728	chr17	14297301	14298000	+	0	NA	Intergenic	CpG	-3431	NR_130138	9953		NM_006041	ENSG00000125430	HS3ST3B1	3-OST-3B|3OST3B1|h3-OST-3B	heparan sulfate-glucosamine 3-sulfotransferase 3B1	protein-coding
74705	chr15	63047721	63049100	+	0	NA	promoter-TSS (NM_001365781)	promoter-TSS (NM_001365781)	-79	NM_001018008	7168		NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA	tropomyosin 1	protein-coding
145443	chr20	43474321	43474580	+	0	NA	Intergenic	MER31B|LTR|ERV1	16554	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
28260	chr10	45674721	45674980	+	0	NA	Intergenic	Intergenic	-2037	NR_104256	93550		NM_174890	ENSG00000172671	ZFAND4	ANUBL1	zinc finger AN1-type containing 4	protein-coding
24431	chr1	243588071	243588230	+	0	NA	intron (NM_005465, intron 8 of 13)	L1MEc|LINE|L1	241974	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
223910	chr9	461071	461430	+	0	NA	intron (NM_203447, intron 46 of 47)	L1MEd|LINE|L1	-9041	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
144045	chr20	33648501	33648730	+	0	NA	3' UTR (NM_001039709, exon 11 of 11)	3' UTR (NM_001039709, exon 11 of 11)	-13712	NM_080825	128864		NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
57966	chr12	123916751	123917050	+	0	NA	intron (NM_207437, intron 62 of 77)	intron (NM_207437, intron 62 of 77)	55159	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
97519	chr17	43994001	43994250	+	0	NA	intron (NM_004160, intron 1 of 6)	AluJb|SINE|Alu	10320	NM_004160	5697		NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
194615	chr6	33552851	33553150	+	0	NA	Intergenic	AluJb|SINE|Alu	27276	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
132476	chr2	105895701	105896600	+	0	NA	Intergenic	Intergenic	44303	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
123078	chr19	51386921	51387400	+	0	NA	exon (NM_030657, exon 2 of 5)	exon (NM_030657, exon 2 of 5)	814	NM_030657	3982		NM_030657	ENSG00000105370	LIM2	CTRCT19|MP17|MP19	lens intrinsic membrane protein 2	protein-coding
65334	chr14	50223971	50224330	+	0	NA	intron (NM_006939, intron 1 of 22)	AluSx3|SINE|Alu	7428	NM_006939	6655		NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
141626	chr2	241688671	241688830	+	0	NA	intron (NM_001330161, intron 1 of 7)	AluSx1|SINE|Alu	1730	NM_001330161	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
137828	chr2	200468051	200468550	+	0	NA	intron (NM_001282743, intron 9 of 11)	intron (NM_001282743, intron 9 of 11)	41768	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
215938	chr8	8333421	8334530	+	0	NA	intron (NR_163138, intron 5 of 6)	intron (NR_163138, intron 5 of 6)	52269	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
13792	chr1	117370401	117370800	+	0	NA	intron (NM_006699, intron 1 of 12)	intron (NM_006699, intron 1 of 12)	3151	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
21583	chr1	206481101	206481300	+	0	NA	intron (NM_001193322, intron 13 of 20)	intron (NM_001193322, intron 13 of 20)	6397	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
210851	chr7	101088001	101088400	+	0	NA	exon (NM_030961, exon 3 of 3)	exon (NM_030961, exon 3 of 3)	2719	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
220804	chr8	102728121	102728550	+	0	NA	Intergenic	Intergenic	72087	NR_160673	101927245		NR_160672	ENSG00000283959	LOC101927245	-	uncharacterized LOC101927245	ncRNA
45750	chr11	119189171	119189330	+	0	NA	TTS (NM_001145018)	TTS (NM_001145018)	1391	NR_145809	109623467		NR_145809		SNORD150	-	small nucleolar RNA, C/D box 150	snoRNA
28295	chr10	46095821	46096350	+	0	NA	Intergenic	MIRb|SINE|MIR	-13410	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
187040	chr5	139846551	139846650	+	0	NA	TTS (NM_004883)	TTS (NM_004883)	50792	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
194488	chr6	33251051	33251350	+	0	NA	intron (NM_001289175, intron 19 of 19).6	AluSg|SINE|Alu	1664	NR_044997	414765		NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25	ncRNA
7334	chr1	32713421	32713680	+	0	NA	Intergenic	L2b|LINE|L2	-10780	NM_001161708	81493		NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
140523	chr2	233231001	233231800	+	0	NA	Intergenic	AluSx|SINE|Alu	-20171	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
198005	chr6	90094921	90095380	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	200681	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
19472	chr1	174983151	174983730	+	0	NA	intron (NM_001366454, intron 8 of 8)	intron (NM_001366454, intron 8 of 8)	-15995	NM_001007214	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
47642	chr12	6273051	6274100	+	0	NA	Intergenic	LTR33|LTR|ERVL	-36757	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
205876	chr7	25093051	25093670	+	0	NA	Intergenic	Intergenic	31900	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
52550	chr12	56141421	56141680	+	0	NA	intron (NM_015292, intron 24 of 30)	AluY|SINE|Alu	-11037	NM_001199629	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
232424	chr9	136092571	136093230	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	2389	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
214859	chr7	151351871	151352600	+	0	NA	intron (NM_016118, intron 4 of 14)	intron (NM_016118, intron 4 of 14)	10423	NM_016118	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
120380	chr19	43639571	43640750	+	0	NA	promoter-TSS (NM_145296)	promoter-TSS (NM_145296)	-310	NM_145296	199731		NM_145296	ENSG00000105767	CADM4	IGSF4C|NECL4|Necl-4|TSLL2|synCAM4	cell adhesion molecule 4	protein-coding
2542	chr1	9726971	9727430	+	0	NA	3' UTR (NM_005026, exon 24 of 24)	3' UTR (NM_005026, exon 24 of 24)	35733	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
31665	chr10	97423801	97424000	+	0	NA	intron (NR_157582, intron 1 of 1)	AluSp|SINE|Alu	2157	NR_157582	644215		NR_157582		LOC644215	-	uncharacterized LOC644215	ncRNA
238755	chrX	154343101	154344000	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	31084	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
51227	chr12	50760371	50761030	+	0	NA	Intergenic	AluSz|SINE|Alu	-3401	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
117232	chr19	19422721	19422980	+	0	NA	intron (NM_001384527, intron 1 of 11)	AluY|SINE|Alu	-12213	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
20558	chr1	198714221	198714580	+	0	NA	intron (NM_002838, intron 12 of 32)	intron (NM_002838, intron 12 of 32)	75360	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
19734	chr1	181140221	181140480	+	0	NA	Intergenic	L3|LINE|CR1	-34134	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
29647	chr10	71853351	71853680	+	0	NA	Intergenic	AluSz|SINE|Alu	-2264	NM_001042466	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
187454	chr5	142119071	142119300	+	0	NA	intron (NM_030571, intron 1 of 7)	L1MC3|LINE|L1	10406	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
103184	chr17	77449671	77449830	+	0	NA	promoter-TSS (NM_001113496)	promoter-TSS (NM_001113496)	-999	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
146937	chr20	51901521	51901600	+	0	NA	Intergenic	Intergenic	-38647	NR_110016	101927678		NR_110016	ENSG00000227964	LINC01429	-	long intergenic non-protein coding RNA 1429	ncRNA
196268	chr6	42938901	42939100	+	0	NA	non-coding (NR_134880, exon 7 of 7)	non-coding (NR_134880, exon 7 of 7)	9520	NR_134891	107080644		NM_001318856		CNPY3-GNMT	-	CNPY3-GNMT readthrough	protein-coding
163963	chr3	52982951	52984250	+	0	NA	intron (NM_016329, intron 1 of 20)	L2a|LINE|L2	62473	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
76606	chr15	75371251	75371580	+	0	NA	3' UTR (NM_001145357, exon 21 of 21)	3' UTR (NM_001145357, exon 21 of 21)	-2788	NM_001256496	4123		NM_006715	ENSG00000140400	MAN2C1	CDDG2|MAN6A8|MANA|MANA1	mannosidase alpha class 2C member 1	protein-coding
105824	chr18	2970721	2971700	+	0	NA	intron (NM_001375808, intron 1 of 19)	L4_C_Mam|LINE|RTE-X	-24587	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
220037	chr8	91197371	91197530	+	0	NA	intron (NR_148895, intron 8 of 10)	L1PA3|LINE|L1	-8035	NR_039805	100616245		NR_039805	ENSG00000266194	MIR4661	-	microRNA 4661	ncRNA
43683	chr11	85812751	85812850	+	0	NA	Intergenic	Intergenic	-1641	NM_001289608	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
121098	chr19	45920401	45920700	+	0	NA	Intergenic	Intergenic	-5772	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
31690	chr10	97545351	97545450	+	0	NA	intron (NM_024954, intron 1 of 2)	(GT)n|Simple_repeat|Simple_repeat	-27041	NM_001291218	26287		NM_020349	ENSG00000165887	ANKRD2	ARPP	ankyrin repeat domain 2	protein-coding
154077	chr22	30755151	30755730	+	0	NA	intron (NM_030758, intron 2 of 13)	intron (NM_030758, intron 2 of 13)	-8813	NM_001282740	23762		NM_030758	ENSG00000184792	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
200748	chr6	137795101	137796030	+	0	NA	Intergenic	Tigger17b|DNA|TcMar-Tigger	-56528	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
106173	chr18	10067421	10067500	+	0	NA	Intergenic	Intergenic	153444	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
184146	chr5	95527921	95528180	+	0	NA	exon (NM_014639, exon 13 of 43)	exon (NM_014639, exon 13 of 43)	26927	NM_014639	9652		NM_014639	ENSG00000198677	SKIC3	KIAA0372|Ski3|THES|TTC37	SKI3 subunit of superkiller complex	protein-coding
45270	chr11	118009171	118009330	+	0	NA	Intergenic	Intergenic	22856	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
233113	chr9	137131271	137131980	+	0	NA	Intergenic	AluJb|SINE|Alu	-7529	NM_007327	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
210357	chr7	99575251	99575550	+	0	NA	3' UTR (NM_001085368, exon 4 of 4)	3' UTR (NM_001085368, exon 4 of 4)	16566	NM_001363334	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
129431	chr2	69439451	69440500	+	0	NA	promoter-TSS (NM_001374284)	promoter-TSS (NM_001374284)	-408	NM_001374284	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
189202	chr5	171429571	171429730	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	10003	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
177438	chr4	112635071	112635230	+	0	NA	intron (NM_018392, intron 1 of 27)	AluSg|SINE|Alu	1759	NM_018392	55345		NM_018392	ENSG00000138658	ZGRF1	C4orf21	zinc finger GRF-type containing 1	protein-coding
36094	chr11	3018371	3018950	+	0	NA	exon (NM_001014437, exon 13 of 23).2	exon (NM_001014437, exon 13 of 23).2	-10734	NR_046580	100852407		NR_046580	ENSG00000247473	CARS1-AS1	CARS-AS1	CARS1 antisense RNA 1	ncRNA
120234	chr19	42325071	42326550	+	0	NA	TTS (NM_001366910)	TTS (NM_001366910)	175	NM_001410	1954		NM_001410	ENSG00000105429	MEGF8	C19orf49|CRPT2|EGFL4|SBP1	multiple EGF like domains 8	protein-coding
123162	chr19	52200171	52200530	+	0	NA	promoter-TSS (NM_001363656)	promoter-TSS (NM_001363656)	-846	NM_001363656	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
11520	chr1	90970071	90970230	+	0	NA	intron (NM_201269, intron 2 of 5)	L4_C_Mam|LINE|RTE-X	51358	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
135525	chr2	162126651	162126950	+	0	NA	intron (NR_110255, intron 1 of 3)	intron (NR_110255, intron 1 of 3)	12359	NR_110255	101929532		NR_110255	ENSG00000236841	LOC101929532	-	uncharacterized LOC101929532	ncRNA
18659	chr1	167058951	167059480	+	0	NA	intron (NM_005814, intron 4 of 6)	intron (NM_005814, intron 4 of 6)	31162	NM_005814	10223		NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
169979	chr3	179349351	179349750	+	0	NA	intron (NM_033540, intron 2 of 17)	AluSx4|SINE|Alu	1841	NM_033540	55669		NM_017927	ENSG00000171109	MFN1	hfzo1|hfzo2	mitofusin 1	protein-coding
50177	chr12	45991501	45992800	+	0	NA	Intergenic	Intergenic	-1576	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
118812	chr19	38514871	38516080	+	0	NA	intron (NM_000540, intron 64 of 105)	intron (NM_000540, intron 64 of 105)	-80872	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
158892	chr3	9916901	9917500	+	0	NA	TTS (NM_153481)	TTS (NM_153481)	102	NM_153461	84818		NM_032732	ENSG00000163702	IL17RC	CANDF9|IL17-RL|IL17RL	interleukin 17 receptor C	protein-coding
204470	chr7	4722601	4722800	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	40405	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
12257	chr1	100448421	100448700	+	0	NA	intron (NM_001319212, intron 7 of 13)	Charlie17a|DNA|hAT-Charlie	-89579	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
108458	chr18	70490251	70490680	+	0	NA	Intergenic	Intergenic	-105874	NR_110764	101060542		NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
101655	chr17	68282751	68283330	+	0	NA	5' UTR (NM_001174166, exon 2 of 7)	5' UTR (NM_001174166, exon 2 of 7)	8087	NM_001174166	9120		NM_004694	ENSG00000108932	SLC16A6	MCT6|MCT7	solute carrier family 16 member 6	protein-coding
130445	chr2	85429701	85429900	+	0	NA	intron (NM_201594, intron 8 of 20)	intron (NM_201594, intron 8 of 20)	10869	NM_201594								
2416	chr1	9588461	9590350	+	0	NA	intron (NM_001130924, intron 1 of 10)	CpG	494	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
172204	chr4	1289171	1290980	+	0	NA	intron (NR_123716, intron 1 of 6)	CpG	184	NM_001297431	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
91744	chr17	6751121	6751380	+	0	NA	Intergenic	AluSg7|SINE|Alu	-4197	NM_001353135	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
167335	chr3	128746821	128747500	+	0	NA	intron (NM_004637, intron 1 of 5)	AluJr4|SINE|Alu	20977	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
111882	chr19	4658171	4658730	+	0	NA	intron (NM_019107, intron 5 of 5)	intron (NM_019107, intron 5 of 5)	11892	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
61018	chr13	48150001	48150500	+	0	NA	Intergenic	Intergenic	-55109	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
178060	chr4	140042521	140042980	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-85265	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
85977	chr16	57381021	57381500	+	0	NA	intron (NM_002996, intron 2 of 2)	MIRb|SINE|MIR	8770	NM_002996	6376		NM_002996	ENSG00000006210	CX3CL1	ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin	C-X3-C motif chemokine ligand 1	protein-coding
79819	chr16	1419451	1419550	+	0	NA	TTS (NM_001272051)	TTS (NM_001272051)	1247	NM_001272051	283951		NM_001010878	ENSG00000174109	UQCC4	C16orf91|CCSMST1|URLC5|gs103	ubiquinol-cytochrome c reductase complex assembly factor 4	protein-coding
101905	chr17	74433471	74433830	+	0	NA	promoter-TSS (NM_018653)	promoter-TSS (NM_018653)	-47	NM_018653	55890		NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding
5752	chr1	26478501	26479050	+	0	NA	Intergenic	AluSz|SINE|Alu	6335	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
60716	chr13	44144321	44144680	+	0	NA	intron (NM_024058, intron 2 of 2)	intron (NM_024058, intron 2 of 2)	2172	NR_104064	101929212		NR_104064	ENSG00000227258	SMIM2-AS1	C13orf44-AS1|C3orf81-AS1	SMIM2 antisense RNA 1	ncRNA
39586	chr11	61254421	61254900	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	13485	NM_014224	5222		NM_014224	ENSG00000256713	PGA5	Pg5	pepsinogen A5	protein-coding
116625	chr19	18295771	18296130	+	0	NA	Intergenic	(TCCA)n|Simple_repeat|Simple_repeat	13873	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
135847	chr2	170815451	170816080	+	0	NA	promoter-TSS (NM_013445)	promoter-TSS (NM_013445)	-925	NM_013445	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
177867	chr4	128517851	128517950	+	0	NA	intron (NR_125882, intron 8 of 8)	intron (NR_125882, intron 8 of 8)	89884	NR_125882	100507487		NR_125882	ENSG00000251432	LINC02615	-	long intergenic non-protein coding RNA 2615	ncRNA
205849	chr7	24914101	24914780	+	0	NA	intron (NM_015550, intron 1 of 22)	MER3|DNA|hAT-Charlie	-21819	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
191664	chr6	13433601	13434080	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	-25703	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
28486	chr10	49771201	49771430	+	0	NA	Intergenic	Intergenic	-8936	NM_001347823	55753		NM_018245	ENSG00000197444	OGDHL	YOBELN	oxoglutarate dehydrogenase L	protein-coding
42884	chr11	73353401	73353600	+	0	NA	intron (NM_014786, intron 3 of 20)	MIR|SINE|MIR	-22899	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
176923	chr4	102816971	102817480	+	0	NA	intron (NM_181893, intron 1 of 6)	intron (NM_181893, intron 1 of 6)	8635	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
88957	chr16	87849771	87850750	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-3636	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
84562	chr16	30607071	30607230	+	0	NA	intron (NM_138447, intron 2 of 2)	AluSx1|SINE|Alu	2678	NR_104166	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
220210	chr8	96160551	96161430	+	0	NA	promoter-TSS (NM_001001557)	promoter-TSS (NM_001001557)	-184	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
127707	chr2	43232251	43232950	+	0	NA	intron (NR_144316, intron 36 of 36)	intron (NR_144316, intron 36 of 36)	5389	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
180171	chr5	1448771	1449130	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-3510	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
4360	chr1	20696301	20697400	+	0	NA	intron (NM_020816, intron 6 of 14)	intron (NM_020816, intron 6 of 14)	21157	NM_020816	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
15679	chr1	150957751	150958050	+	0	NA	intron (NM_012432, intron 14 of 21)	intron (NM_012432, intron 14 of 21)	16935	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
11671	chr1	91821521	91821980	+	0	NA	intron (NR_036634, intron 2 of 17)	MIRb|SINE|MIR	64401	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
63780	chr14	21263721	21265000	+	0	NA	intron (NM_004500, intron 1 of 8)	intron (NM_004500, intron 1 of 8)	5082	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
202447	chr6	158029221	158029880	+	0	NA	intron (NM_003898, intron 3 of 26)	AluSx1|SINE|Alu	12457	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
14646	chr1	145512751	145513050	+	0	NA	Intergenic	Intergenic	94958	NR_104217	101929780		NR_104217	ENSG00000291005	NBPF25P	WI2-925H4.1	NBPF member 25, pseudogene	pseudo
195921	chr6	41782551	41782850	+	0	NA	intron (NM_013397, intron 2 of 7)	intron (NM_013397, intron 2 of 7)	1918	NM_013397	29964		NM_013397	ENSG00000278224	PRICKLE4	C6orf49|OBTP|OEBT|TOMM6	prickle planar cell polarity protein 4	protein-coding
132449	chr2	105855171	105855530	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	3503	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
85624	chr16	54284251	54284950	+	0	NA	exon (NM_024336, exon 2 of 4)	exon (NM_024336, exon 2 of 4)	2187	NM_024336	79191		NM_024336	ENSG00000177508	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
227135	chr9	86275971	86276730	+	0	NA	intron (NM_030940, intron 1 of 3)	MER1A|DNA|hAT-Charlie	6188	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
234256	chrX	13123151	13123450	+	0	NA	Intergenic	Intergenic	-78680	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
77302	chr15	82348871	82349500	+	0	NA	intron (NM_001164465, intron 1 of 8)	intron (NM_001164465, intron 1 of 8)	290	NM_001164465	647042		NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family like 10	protein-coding
233736	chrX	1377371	1377530	+	0	NA	intron (NM_001267713, intron 7 of 9).2	AluSx1|SINE|Alu	14663	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
59616	chr13	27924201	27924600	+	0	NA	exon (NM_000209, exon 2 of 2)	exon (NM_000209, exon 2 of 2)	4400	NM_000209	3651		NM_000209	ENSG00000139515	PDX1	GSF|IDX-1|IPF1|IUF1|MODY4|PAGEN1|PDX-1|STF-1	pancreatic and duodenal homeobox 1	protein-coding
170316	chr3	184354071	184355000	+	0	NA	intron (NM_004366, intron 14 of 23)	intron (NM_004366, intron 14 of 23)	7070	NM_001171089	1181		NM_004366	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|FHA2|FHII|HALD2|LKPAT|clC-2	chloride voltage-gated channel 2	protein-coding
77971	chr15	89398271	89398430	+	0	NA	non-coding (NR_133001, exon 7 of 7)	non-coding (NR_133001, exon 7 of 7)	-1821	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
44594	chr11	108417521	108417800	+	0	NA	intron (NM_001351110, intron 2 of 8)	L1M4a2|LINE|L1	49869	NM_001330368	160140		NM_152587	ENSG00000166323	C11orf65	MFI	chromosome 11 open reading frame 65	protein-coding
62574	chr13	99977871	99978430	+	0	NA	Intergenic	Intergenic	-3634	NM_007129	7546		NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
92830	chr17	16202371	16203300	+	0	NA	intron (NM_006311, intron 1 of 45)	intron (NM_006311, intron 1 of 45)	-8196	NM_001190438	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
93350	chr17	18224551	18224650	+	0	NA	Intergenic	Intergenic	-1035	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
112178	chr19	5661421	5661930	+	0	NA	exon (NM_001201340, exon 14 of 20)	exon (NM_001201340, exon 14 of 20)	18563	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
84291	chr16	30082471	30083050	+	0	NA	exon (NM_001303503, exon 5 of 9)	exon (NM_001303503, exon 5 of 9)	6766	NM_001303507	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
152040	chr22	19492871	19493030	+	0	NA	intron (NR_161281, intron 5 of 16)	L1MD1|LINE|L1	13030	NR_161281	8318		NM_003504	ENSG00000093009	CDC45	CDC45L|CDC45L2|MGORS7|PORC-PI-1	cell division cycle 45	protein-coding
33555	chr10	119307851	119308300	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	-69897	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
98482	chr17	47206671	47207350	+	0	NA	Intergenic	Intergenic	-2052	NM_001002841	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
25795	chr10	11176601	11177200	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	11870	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
224833	chr9	27093471	27093700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-15556	NM_001290078	7010		NM_000459	ENSG00000120156	TEK	CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1	TEK receptor tyrosine kinase	protein-coding
207492	chr7	44734951	44735750	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-13216	NM_001300959	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
161583	chr3	43011201	43012100	+	0	NA	intron (NM_001129908, intron 1 of 4)	intron (NM_001129908, intron 1 of 4)	32339	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
30162	chr10	74185151	74185950	+	0	NA	intron (NM_001369124, intron 1 of 9)	intron (NM_001369124, intron 1 of 9)	8787	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
150873	chr21	44120551	44120850	+	0	NA	exon (NM_001368238, exon 12 of 21).2	exon (NM_001368238, exon 12 of 21).2	-12983	NR_135220	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
191763	chr6	14074921	14075630	+	0	NA	Intergenic	Intergenic	-41981	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
160686	chr3	32288601	32289150	+	0	NA	intron (NM_001320308, intron 1 of 2)	MIRc|SINE|MIR	50195	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
196296	chr6	43011901	43012500	+	0	NA	3' UTR (NM_001318942, exon 4 of 4)	3' UTR (NM_001318942, exon 4 of 4)	1746	NM_014623	4201		NM_014623	ENSG00000124733	MEA1	HYS|MEA	male-enhanced antigen 1	protein-coding
226697	chr9	75106001	75106200	+	0	NA	intron (NM_012383, intron 1 of 9)	intron (NM_012383, intron 1 of 9)	17586	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
48250	chr12	8443371	8443730	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-12412	NM_001317999	93978		NM_001007033	ENSG00000205846	CLEC6A	CLEC4N|CLECSF10|dectin-2|hDECTIN-2	C-type lectin domain containing 6A	protein-coding
75835	chr15	69460521	69461500	+	0	NA	Intergenic	FRAM|SINE|Alu	8192	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
188341	chr5	151316001	151316300	+	0	NA	3' UTR (NM_181776, exon 10 of 10)	3' UTR (NM_181776, exon 10 of 10)	-12384	NM_181774	285641		NM_181774	ENSG00000186334	SLC36A3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 member 3	protein-coding
168513	chr3	143847471	143847830	+	0	NA	intron (NM_173653, intron 1 of 15)	intron (NM_173653, intron 1 of 15)	818	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
121066	chr19	45867871	45868200	+	0	NA	intron (NM_004497, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	3709	NM_004497	3171		NM_004497	ENSG00000170608	FOXA3	FKHH3|HNF3G|TCF3G	forkhead box A3	protein-coding
49202	chr12	15879521	15879780	+	0	NA	Intergenic	LTR33|LTR|ERVL	-2737	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
88435	chr16	84764871	84765230	+	0	NA	intron (NM_005153, intron 10 of 13)	AluSx3|SINE|Alu	-54935	NM_031476	83716		NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2|LGL1	cysteine rich secretory protein LCCL domain containing 2	protein-coding
25760	chr10	11009371	11009930	+	0	NA	intron (NM_001326339, intron 1 of 11)	intron (NM_001326339, intron 1 of 11)	3991	NM_001326339	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
115026	chr19	14088451	14088750	+	0	NA	intron (NM_138352, intron 5 of 5)	intron (NM_138352, intron 5 of 5)	2151	NM_138352	90378		NM_138352	ENSG00000141858	SAMD1	-	sterile alpha motif domain containing 1	protein-coding
32039	chr10	101034371	101034730	+	0	NA	intron (NM_030971, intron 2 of 11)	LTR5A|LTR|ERVK	3311	NM_030971	81855		NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3|SLC56A3	sideroflexin 3	protein-coding
56809	chr12	120213771	120214600	+	0	NA	exon (NM_001243756, exon 9 of 11)	exon (NM_001243756, exon 9 of 11)	12894	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
213265	chr7	134639821	134640080	+	0	NA	Intergenic	Intergenic	-6829	NM_001293085	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
192611	chr6	26042751	26044700	+	0	NA	promoter-TSS (NM_021062)	promoter-TSS (NM_021062)	-12	NM_021062	3018		NM_021062	ENSG00000276410	H2BC3	H2B.1|H2B/f|H2BFF|HIST1H2BB	H2B clustered histone 3	protein-coding
139692	chr2	227459921	227461030	+	0	NA	Intergenic	MIR|SINE|MIR	-11657	NR_049888	100847081		NR_049888	ENSG00000284092	MIR5703	mir-5703	microRNA 5703	ncRNA
131151	chr2	91519501	91519700	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	140349	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
142041	chr20	1686521	1687200	+	0	NA	Intergenic	Intergenic	-29081	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
77748	chr15	85749571	85750780	+	0	NA	TTS (NM_001270546)	TTS (NM_001270546)	8550	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
169997	chr3	179898151	179898330	+	0	NA	promoter-TSS (NR_110059)	promoter-TSS (NR_110059)	46	NR_110059	101928790		NR_110059	ENSG00000244302	PEX5L-AS2	-	PEX5L antisense RNA 2	ncRNA
194153	chr6	32040851	32041150	+	0	NA	TTS (NM_001365276).6	TTS (NM_001365276).6	2585	NM_000500	1589		NM_000500	ENSG00000231852	CYP21A2	CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B	cytochrome P450 family 21 subfamily A member 2	protein-coding
18351	chr1	161218451	161219150	+	0	NA	intron (NM_004106, intron 4 of 4)	G-rich|Low_complexity|Low_complexity	3505	NM_004106	2207		NM_004106	ENSG00000158869	FCER1G	FCRG	Fc epsilon receptor Ig	protein-coding
136943	chr2	190317401	190317600	+	0	NA	intron (NM_198047, intron 1 of 12)	intron (NM_198047, intron 1 of 12)	2326	NM_198047	26275		NM_014362	ENSG00000198130	HIBCH	HIBYLCOAH	3-hydroxyisobutyryl-CoA hydrolase	protein-coding
84766	chr16	30982771	30983130	+	0	NA	intron (NM_014712, intron 17 of 18)	L2|LINE|L2	-2257	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
111707	chr19	4303701	4303900	+	0	NA	promoter-TSS (NM_001330429)	promoter-TSS (NM_001330429)	-794	NM_001330429	79187		NM_024333	ENSG00000105255	FSD1	GLFND|MIR1	fibronectin type III and SPRY domain containing 1	protein-coding
212587	chr7	128963371	128963550	+	0	NA	intron (NR_167924, intron 21 of 22)	intron (NR_167924, intron 21 of 22)	22192	NM_001364314	3663		NM_032643	ENSG00000128604	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
95595	chr17	37392071	37392530	+	0	NA	3' UTR (NM_173625, exon 7 of 7).2	3' UTR (NM_173625, exon 7 of 7).2	14511	NM_198839	31		NM_000664	ENSG00000278540	ACACA	ACAC|ACACAD|ACACalpha|ACC|ACC1|ACCA|ACCalpha|Acac1|hACC1	acetyl-CoA carboxylase alpha	protein-coding
134490	chr2	143279851	143280750	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	150881	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
175827	chr4	78057201	78057480	+	0	NA	promoter-TSS (NM_001166133)	promoter-TSS (NM_001166133)	17	NM_025074	80144		NM_020875	ENSG00000138759	FRAS1	FRASRS1	Fraser extracellular matrix complex subunit 1	protein-coding
20445	chr1	198523051	198523640	+	0	NA	3' UTR (NM_001376863, exon 4 of 4)	3' UTR (NM_001376863, exon 4 of 4)	17335	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
134761	chr2	147036951	147037300	+	0	NA	Intergenic	AluSx|SINE|Alu	450068	NR_026904	728773		NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
208260	chr7	65748021	65748280	+	0	NA	intron (NR_038378, intron 2 of 7)	L1PA8|LINE|L1	2774	NR_103527	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
19970	chr1	184960951	184961250	+	0	NA	intron (NM_052966, intron 1 of 13)	AluY|SINE|Alu	13408	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
173187	chr4	6767471	6767830	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	-15077	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
6129	chr1	27356071	27357000	+	0	NA	intron (NM_004672, intron 25 of 28)	intron (NM_004672, intron 25 of 28)	10426	NM_001297609	9064		NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
218052	chr8	38846151	38846250	+	0	NA	intron (NR_148049, intron 9 of 10)	AluYc3|SINE|Alu	40750	NM_001352802	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
202004	chr6	152587601	152587800	+	0	NA	intron (NM_033071, intron 2 of 145)	intron (NM_033071, intron 2 of 145)	49151	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
122550	chr19	49652451	49652550	+	0	NA	exon (NM_021228, exon 7 of 11)	exon (NM_021228, exon 7 of 11)	10291	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
214912	chr7	151462071	151462750	+	0	NA	Intergenic	L1M4|LINE|L1	-21597	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
228332	chr9	98791051	98791900	+	0	NA	intron (NM_173551, intron 1 of 14)	intron (NM_173551, intron 1 of 14)	5080	NM_173551	203286		NM_173551	ENSG00000165138	ANKS6	ANKRD14|NPHP16|PKDR1|SAMD6	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding
233532	chrX	223601	223800	+	0	NA	Intergenic	Intergenic	-52656	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
149086	chr21	15784571	15784930	+	0	NA	intron (NM_001352560, intron 4 of 23)	L1M1|LINE|L1	54768	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
202331	chr6	157456471	157456730	+	0	NA	intron (NM_024630, intron 1 of 8)	intron (NM_024630, intron 1 of 8)	-72532	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
95560	chr17	36931071	36931500	+	0	NA	TTS (NR_135668)	TTS (NR_135668)	5376	NR_135670	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
73304	chr15	41881851	41882580	+	0	NA	intron (NM_016642, intron 11 of 67)	CpG-8142	-10562	NR_135681	105370792		NR_135681	ENSG00000174171	LOC105370792	-	uncharacterized LOC105370792	ncRNA
188896	chr5	160008651	160010150	+	0	NA	intron (NM_003314, intron 1 of 7)	intron (NM_003314, intron 1 of 7)	261	NM_003314	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
34173	chr10	128097471	128097630	+	0	NA	3' UTR (NM_002417, exon 15 of 15)	3' UTR (NM_002417, exon 15 of 15)	28873	NM_002417	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
211135	chr7	102539171	102539930	+	0	NA	intron (NM_001097615, intron 8 of 8)	intron (NM_001097615, intron 8 of 8)	5238	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
214283	chr7	149064801	149065010	+	0	NA	Intergenic	Intergenic	25813	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
197961	chr6	89971571	89971930	+	0	NA	intron (NM_021813, intron 6 of 8)	THE1B|LTR|ERVL-MaLR	77281	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
172429	chr4	1863501	1864050	+	0	NA	Intergenic	Intergenic	-7618	NM_001042424	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
67597	chr14	72453451	72453550	+	0	NA	intron (NM_001370288, intron 3 of 16)	AluYa5|SINE|Alu	-63320	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
35365	chr11	1257671	1258030	+	0	NA	intron (NM_002458, intron 41 of 48)	intron (NM_002458, intron 41 of 48)	1245	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
188437	chr5	154446701	154447200	+	0	NA	intron (NM_001131063, intron 1 of 2)	CpG	953	NM_001131062	79685		NM_024632	ENSG00000164576	SAP30L	NS4ATP2	SAP30 like	protein-coding
190662	chr5	181249601	181250100	+	0	NA	intron (NR_109909, intron 2 of 2)	AluSx|SINE|Alu	3309	NR_109909	101928649		NR_109909	ENSG00000233937	CTC-338M12.4	-	uncharacterized LOC101928649	ncRNA
102207	chr17	75185451	75185750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2641	NM_006937	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
50869	chr12	49181871	49182500	+	0	NA	Intergenic	Intergenic	6895	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
232209	chr9	134343821	134344680	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	17795	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
81968	chr16	11869501	11869700	+	0	NA	3' UTR (NM_002094, exon 15 of 15)	3' UTR (NM_002094, exon 15 of 15)	-18058	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
159206	chr3	12886101	12886800	+	0	NA	Intergenic	Intergenic	-1239	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
72565	chr15	34544021	34544780	+	0	NA	intron (NM_001023567, intron 7 of 23)	intron (NM_001023567, intron 7 of 23)	-16029	NR_036261	100422845		NR_036261	ENSG00000221065	MIR1233-2	-	microRNA 1233-2	ncRNA
154142	chr22	31266351	31266850	+	0	NA	intron (NM_005569, intron 8 of 15)	intron (NM_005569, intron 8 of 15)	18216	NM_001031801	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
118609	chr19	36775751	36775930	+	0	NA	non-coding (NR_164115, exon 2 of 2)	non-coding (NR_164115, exon 2 of 2)	2687	NR_164116	728485		NR_164115	ENSG00000267260	LOC728485	-	uncharacterized LOC728485	ncRNA
74880	chr15	63582201	63582650	+	0	NA	intron (NR_046342, intron 12 of 15)	intron (NR_046342, intron 12 of 15)	-14962	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
104503	chr17	81221151	81221450	+	0	NA	intron (NM_014984, intron 1 of 25)	intron (NM_014984, intron 1 of 25)	1665	NM_001319228	22994		NM_014984	ENSG00000141577	CEP131	AZ1|AZI1|ZA1	centrosomal protein 131	protein-coding
137104	chr2	190966301	190966500	+	0	NA	TTS (NM_014905)	TTS (NM_014905)	47771	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
197855	chr6	89008051	89008350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-44582	NM_001286428	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
35390	chr11	1341671	1342500	+	0	NA	Intergenic	Intergenic	32377	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
220128	chr8	94722451	94723300	+	0	NA	intron (NM_181787, intron 1 of 18)	intron (NM_181787, intron 1 of 18)	2975	NM_181787	286148		NM_181787	ENSG00000156162	DPY19L4	-	dpy-19 like 4	protein-coding
117066	chr19	19035821	19036080	+	0	NA	intron (NM_001199196, intron 2 of 8)	MER4A|LTR|ERV1	-2106	NM_001352071	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
79484	chr16	769171	769530	+	0	NA	promoter-TSS (NR_030384)	promoter-TSS (NR_030384)	-833	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
36102	chr11	3051151	3051450	+	0	NA	intron (NR_165428, intron 1 of 22)	intron (NR_165428, intron 1 of 22)	6123	NM_001751	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
3195	chr1	13735251	13735350	+	0	NA	intron (NM_001135610, intron 4 of 7)	intron (NM_001135610, intron 4 of 7)	-14115	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
37045	chr11	12197351	12197680	+	0	NA	intron (NR_144415, intron 2 of 26)	intron (NR_144415, intron 2 of 26)	33832	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
72590	chr15	34987821	34989000	+	0	NA	promoter-TSS (NM_014106)	promoter-TSS (NM_014106)	-123	NM_014106	54989		NM_014106	ENSG00000198146	ZNF770	PRO1914	zinc finger protein 770	protein-coding
100086	chr17	58309621	58309930	+	0	NA	intron (NM_001261835, intron 21 of 31)	intron (NM_001261835, intron 21 of 31)	-15675	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
80573	chr16	2857771	2859180	+	0	NA	promoter-TSS (NM_022119)	promoter-TSS (NM_022119)	-305	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
154099	chr22	31036751	31036850	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-27318	NR_168472	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
114019	chr19	10884401	10884600	+	0	NA	intron (NM_001370089, intron 1 of 14)	intron (NM_001370089, intron 1 of 14)	12071	NM_001370089	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
236193	chrX	65671101	65671300	+	0	NA	intron (NM_002444, intron 1 of 12)	MIR3|SINE|MIR	3546	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
118959	chr19	38844051	38845200	+	0	NA	intron (NM_001533, intron 4 of 12)	intron (NM_001533, intron 4 of 12)	5361	NM_001533	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
70666	chr14	103073901	103074100	+	0	NA	Intergenic	Intergenic	-10210	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
121232	chr19	46640721	46640980	+	0	NA	Intergenic	L2a|LINE|L2	-6168	NM_033258	94235		NM_033258	ENSG00000167414	GNG8	HG3E	G protein subunit gamma 8	protein-coding
53243	chr12	62517851	62518150	+	0	NA	intron (NM_001278472, intron 9 of 35)	MLT1A0|LTR|ERVL-MaLR	51174	NM_015026	23041		NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
181401	chr5	40689371	40690180	+	0	NA	intron (NM_000958, intron 2 of 2)	Tigger15a|DNA|TcMar-Tigger	9860	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
236342	chrX	70030351	70030700	+	0	NA	intron (NM_001005612, intron 6 of 7)	intron (NM_001005612, intron 6 of 7)	7668	NR_037494	100500887		NR_037494	ENSG00000211991	MIR676	hsa-mir-676|mir-676	microRNA 676	ncRNA
137472	chr2	197073701	197074350	+	0	NA	intron (NR_160034, intron 16 of 28)	intron (NR_160034, intron 16 of 28)	-123966	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
230205	chr9	127816671	127817400	+	0	NA	non-coding (NR_136302, exon 1 of 6)	non-coding (NR_136302, exon 1 of 6)	969	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
21052	chr1	203272071	203272230	+	0	NA	Intergenic	Intergenic	-15002	NR_117097	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
101360	chr17	67208221	67208880	+	0	NA	intron (NM_001330447, intron 5 of 32)	intron (NM_001330447, intron 5 of 32)	-36226	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
193216	chr6	29829371	29829730	+	0	NA	exon (NM_001384280, exon 6 of 9)	exon (NM_001384280, exon 6 of 9)	1725	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
145833	chr20	45822421	45823230	+	0	NA	TTS (NM_003279)	TTS (NM_003279)	4487	NM_003279	7125		NM_003279	ENSG00000101470	TNNC2	CFAP85|CMYP15|FAP85|MYONRI	troponin C2, fast skeletal type	protein-coding
226679	chr9	75086751	75087500	+	0	NA	intron (NM_001127603, intron 1 of 7)	AluSc|SINE|Alu	1030	NM_001127603	54981		NM_017881	ENSG00000106733	NMRK1	C9orf95|NRK1|bA235O14.2	nicotinamide riboside kinase 1	protein-coding
32487	chr10	102675951	102676500	+	0	NA	3' UTR (NM_004311, exon 6 of 6)	3' UTR (NM_004311, exon 6 of 6)	31730	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
223617	chr8	144318051	144318380	+	0	NA	promoter-TSS (NR_106907)	promoter-TSS (NR_106907)	-900	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
42419	chr11	69069551	69070200	+	0	NA	intron (NM_139075, intron 8 of 24)	intron (NM_139075, intron 8 of 24)	-13301	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
154393	chr22	35301671	35302250	+	0	NA	intron (NR_156428, intron 1 of 13)	intron (NR_156428, intron 1 of 13)	2066	NR_156428	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
114313	chr19	11972821	11972900	+	0	NA	intron (NM_001367172, intron 1 of 3)	FLAM_C|SINE|Alu	7820	NM_001367172	284390		NM_001012753	ENSG00000197054	ZNF763	ZNF|ZNF440L	zinc finger protein 763	protein-coding
21544	chr1	206053201	206053430	+	0	NA	intron (NM_001007544, intron 1 of 5)	Harlequin-int|LTR|ERV1	142	NM_001007544	440712		NM_001007544	ENSG00000263961	RHEX	C1orf186	regulator of hemoglobinization and erythroid cell expansion	protein-coding
39991	chr11	62623431	62625600	+	0	NA	TTS (NM_001278194)	TTS (NM_001278194)	-2529	NM_001288723	26229		NM_012200	ENSG00000149541	B3GAT3	GLCATI|JDSCD|glcUAT-I	beta-1,3-glucuronyltransferase 3	protein-coding
129347	chr2	68760271	68760630	+	0	NA	intron (NM_001364821, intron 1 of 10)	L1MB3|LINE|L1	-14460	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
160328	chr3	27659101	27659750	+	0	NA	Intergenic	Intergenic	62898	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
129223	chr2	68244971	68245130	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	7482	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
107864	chr18	54947151	54947350	+	0	NA	intron (NM_025214, intron 1 of 11)	intron (NM_025214, intron 1 of 11)	10798	NM_001143829	80323		NM_025214	ENSG00000166510	CCDC68	SE57-1	coiled-coil domain containing 68	protein-coding
68505	chr14	88385001	88386130	+	0	NA	promoter-TSS (NM_018418)	promoter-TSS (NM_018418)	-79	NM_001040428	55812		NM_018418	ENSG00000042317	SPATA7	HEL-S-296|HSD-3.1|HSD3|LCA3|RP94	spermatogenesis associated 7	protein-coding
117098	chr19	19173351	19173650	+	0	NA	intron (NR_027308, intron 5 of 11)	L2c|LINE|L2	-3237	NM_001367282	100271849		NM_001145785	ENSG00000213999	MEF2B	RSRFR2	myocyte enhancer factor 2B	protein-coding
157018	chr22	42538321	42538580	+	0	NA	Intergenic	AluSx3|SINE|Alu	-15506	NR_104301	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
128933	chr2	64531371	64531530	+	0	NA	intron (NM_203437, intron 1 of 9)	intron (NM_203437, intron 1 of 9)	5937	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
110884	chr19	2639271	2639800	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	8820	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
209672	chr7	79915471	79916030	+	0	NA	Intergenic	L1P2|LINE|L1	-219081	NM_002069	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
118731	chr19	38263821	38265350	+	0	NA	promoter-TSS (NM_021102)	promoter-TSS (NM_021102)	12	NM_001166103	10653		NM_021102	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	serine peptidase inhibitor, Kunitz type 2	protein-coding
91056	chr17	2955051	2955400	+	0	NA	intron (NM_001100398, intron 3 of 23)	L1MB5|LINE|L1	10670	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
90758	chr17	2049251	2051370	+	0	NA	promoter-TSS (NR_029625)	promoter-TSS (NR_029625)	70	NR_029625	406994		NR_029625	ENSG00000267195	MIR212	MIRN212|mir-212	microRNA 212	ncRNA
83189	chr16	23494451	23494550	+	0	NA	intron (NM_015044, intron 2 of 16)	intron (NM_015044, intron 2 of 16)	15994	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
153625	chr22	28678371	28678530	+	0	NA	intron (NM_001145418, intron 1 of 22)	AluJo|SINE|Alu	1415	NM_001145418	23331		NM_015281	ENSG00000100154	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
137565	chr2	197248451	197249100	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	50784	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
175545	chr4	74932951	74933500	+	0	NA	5' UTR (NM_015393, exon 1 of 4)	5' UTR (NM_015393, exon 1 of 4)	109	NM_015393	25849		NM_015393	ENSG00000169116	PARM1	Cipar1|DKFZP564O0823|PARM-1|WSC4	prostate androgen-regulated mucin-like protein 1	protein-coding
164985	chr3	71315671	71315830	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-10979	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
5581	chr1	25992801	25993400	+	0	NA	intron (NM_000437, intron 1 of 10)	MLT1K|LTR|ERVL-MaLR	4963	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
185130	chr5	119299121	119300550	+	0	NA	intron (NM_001077654, intron 1 of 1)	L1PA3|LINE|L1	31076	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
60388	chr13	40948901	40949880	+	0	NA	intron (NM_001370329, intron 6 of 9)	AluJr4|SINE|Alu	-27616	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
92144	chr17	7648651	7649250	+	0	NA	intron (NM_001303263, intron 1 of 5)	L2|LINE|L2	-1976	NM_001678	482		NM_001678	ENSG00000129244	ATP1B2	AMOG	ATPase Na+/K+ transporting subunit beta 2	protein-coding
81324	chr16	4731971	4732530	+	0	NA	intron (NM_001308089, intron 1 of 16)	intron (NM_001308089, intron 1 of 16)	2021	NM_001324130	124401		NM_133450	ENSG00000168096	ANKS3	-	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding
223789	chr8	144686801	144688580	+	0	NA	Intergenic	Intergenic	-1844	NM_001308208	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
39782	chr11	61947351	61948030	+	0	NA	Intergenic	Intergenic	-2131	NM_001363592	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
11379	chr1	89654451	89654950	+	0	NA	intron (NM_032270, intron 1 of 2)	HAL1|LINE|L1	21580	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
212806	chr7	130366821	130368100	+	0	NA	promoter-TSS (NR_133928)	promoter-TSS (NR_133928)	-333	NR_133928	105375504		NR_133928		LOC105375504	-	uncharacterized LOC105375504	ncRNA
60512	chr13	41346401	41347350	+	0	NA	intron (NM_024561, intron 9 of 19)	L1MB8|LINE|L1	-34837	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
15371	chr1	150118251	150118950	+	0	NA	intron (NR_103998, intron 13 of 13)	AluSz|SINE|Alu	-30834	NM_001304722	51177		NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding
127882	chr2	46062701	46063250	+	0	NA	intron (NM_005400, intron 10 of 14)	intron (NM_005400, intron 10 of 14)	-234432	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
168132	chr3	138935951	138936780	+	0	NA	non-coding (NR_121649, exon 3 of 3)	non-coding (NR_121649, exon 3 of 3)	7655	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
33448	chr10	119039271	119039630	+	0	NA	intron (NM_003750, intron 19 of 21)	AluJb|SINE|Alu	9736	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
188868	chr5	159340371	159341030	+	0	NA	intron (NR_037889, intron 2 of 4)	L2c|LINE|L2	9182	NR_037889	285626		NR_037889	ENSG00000249738	LOC285626	-	uncharacterized LOC285626	ncRNA
15902	chr1	151600401	151601000	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-11350	NM_001330723	81609		NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin 27	protein-coding
18896	chr1	168313371	168313530	+	0	NA	3' UTR (NM_005149, exon 8 of 8)	3' UTR (NM_005149, exon 8 of 8)	32573	NM_005149	9095		NM_005149	ENSG00000143178	TBX19	TBS19|TPIT|dJ747L4.1	T-box transcription factor 19	protein-coding
69251	chr14	92924351	92924450	+	0	NA	intron (NM_001301690, intron 2 of 6).2	intron (NM_001301690, intron 2 of 6).2	1250	NM_001301690	1113		NM_001275	ENSG00000100604	CHGA	CGA|PHE5|PHES	chromogranin A	protein-coding
170425	chr3	185633001	185633200	+	0	NA	3' UTR (NM_021627, exon 17 of 17)	3' UTR (NM_021627, exon 17 of 17)	46805	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
161055	chr3	38023451	38025900	+	0	NA	promoter-TSS (NM_001130964)	promoter-TSS (NM_001130964)	-155	NR_024071	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
184197	chr5	95861071	95861430	+	0	NA	Intergenic	MIRc|SINE|MIR	9018	NR_026936	202299		NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
179456	chr4	184444821	184445430	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	29425	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
30908	chr10	87079401	87079900	+	0	NA	intron (NM_001318906, intron 1 of 13)	intron (NM_001318906, intron 1 of 13)	14437	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
137	chr1	516771	517380	+	0	NA	Intergenic	Intergenic	-21630	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
132765	chr2	109800351	109800650	+	0	NA	intron (NM_001384364, intron 1 of 22).2	AluSz|SINE|Alu	5891	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
27719	chr10	33612451	33612750	+	0	NA	Intergenic	L1MEg|LINE|L1	160080	NR_038932	100505583		NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
149534	chr21	33022971	33023500	+	0	NA	Intergenic	CpG	-2700	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
50520	chr12	47832151	47832600	+	0	NA	Intergenic	Intergenic	-12472	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
101736	chr17	69394651	69395250	+	0	NA	Intergenic	Intergenic	-19747	NM_002758	5608		NM_002758	ENSG00000108984	MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
82702	chr16	20774801	20775080	+	0	NA	intron (NM_202000, intron 2 of 8)	L1MA4A|LINE|L1	10926	NM_005622	6296		NM_005622	ENSG00000005187	ACSM3	SA|SAH	acyl-CoA synthetase medium chain family member 3	protein-coding
11177	chr1	87326921	87327180	+	0	NA	Intergenic	Intergenic	-1830	NM_006769	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
115299	chr19	14632271	14632630	+	0	NA	intron (NM_001289158, intron 12 of 14)	MLT1J|LTR|ERVL-MaLR	10237	NR_132784	106635534		NR_132784		SNORA104	-	small nucleolar RNA, H/ACA box 104	snoRNA
98980	chr17	48732201	48732430	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3565	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
204335	chr7	2758021	2759700	+	0	NA	intron (NM_001282441, intron 3 of 4)	L1ME3A|LINE|L1	4280	NM_001282440	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
33626	chr10	119650351	119652090	+	0	NA	promoter-TSS (NM_004281)	promoter-TSS (NM_004281)	-160	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
155219	chr22	37894671	37895130	+	0	NA	Intergenic	Intergenic	-11397	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
186509	chr5	138344871	138345030	+	0	NA	exon (NM_001350195, exon 4 of 5)	exon (NM_001350195, exon 4 of 5)	-6595	NM_001364026	995		NM_001790	ENSG00000158402	CDC25C	CDC25|PPP1R60	cell division cycle 25C	protein-coding
22528	chr1	222048301	222048550	+	0	NA	Intergenic	Intergenic	-69905	NR_149057	105372950		NR_149057	ENSG00000238042	LINC02257	-	long intergenic non-protein coding RNA 2257	ncRNA
90278	chr17	1003821	1004280	+	0	NA	TTS (NM_013337)	TTS (NM_013337)	6921	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
35020	chr11	553151	553800	+	0	NA	intron (NM_198075, intron 13 of 13)	intron (NM_198075, intron 13 of 13)	-5787	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
196029	chr6	42033301	42033500	+	0	NA	intron (NM_001287434, intron 1 of 4)	AluSx|SINE|Alu	15494	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
130835	chr2	87105771	87106300	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-29622	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
61353	chr13	50916551	50917350	+	0	NA	intron (NM_001142279, intron 1 of 9)	intron (NM_001142279, intron 1 of 9)	-6238	NR_046552	100874255		NR_046552		RNASEH2B-AS1	-	RNASEH2B antisense RNA 1	ncRNA
221802	chr8	127981201	127982900	+	0	NA	intron (NR_003367, intron 3 of 8)	MIR|SINE|MIR	21417	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
69771	chr14	99170801	99171080	+	0	NA	3' UTR (NM_138576, exon 4 of 4)	3' UTR (NM_138576, exon 4 of 4)	101257	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
48934	chr12	12715501	12716100	+	0	NA	Intergenic	MIR3|SINE|MIR	-1568	NM_004064	1027		NM_004064	ENSG00000111276	CDKN1B	CDKN4|KIP1|MEN1B|MEN4|P27KIP1	cyclin dependent kinase inhibitor 1B	protein-coding
63491	chr13	114194571	114195350	+	0	NA	Intergenic	L2|LINE|L2	-39885	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
83387	chr16	26614201	26614600	+	0	NA	Intergenic	Intergenic	-452527	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
63805	chr14	21386501	21386800	+	0	NA	intron (NM_001170629, intron 37 of 37)	AluYf1|SINE|Alu	-2631	NM_007192	11198		NM_007192	ENSG00000092201	SUPT16H	CDC68|FACTP140|NEDDFAC|SPT16|SPT16/CDC68	SPT16 homolog, facilitates chromatin remodeling subunit	protein-coding
91783	chr17	7010601	7010800	+	0	NA	TTS (NM_000697)	TTS (NM_000697)	1634	NR_040089	100506713		NR_040089	ENSG00000215067	ALOX12-AS1	-	ALOX12 antisense RNA 1	ncRNA
199777	chr6	125972651	125973150	+	0	NA	intron (NM_138571, intron 3 of 4)	intron (NM_138571, intron 3 of 4)	-13530	NM_001350583	60487		NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
167470	chr3	129116321	129117430	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	4929	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
49523	chr12	25496001	25496700	+	0	NA	TTS (NM_001352233)	TTS (NM_001352233)	56933	NM_001256266	160492		NM_152590	ENSG00000152936	LMNTD1	IFLTD1|LMNARS1|PAS1C1	lamin tail domain containing 1	protein-coding
74133	chr15	55239871	55240730	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	29986	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
34008	chr10	124694601	124695330	+	0	NA	intron (NM_014661, intron 3 of 4)	MIR1_Amn|SINE|MIR	-9063	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
112236	chr19	5716501	5717080	+	0	NA	intron (NM_001276480, intron 1 of 17)	LTR10E|LTR|ERV1	3356	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
100534	chr17	62503151	62503450	+	0	NA	intron (NM_001375269, intron 2 of 20)	AluY|SINE|Alu	22187	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
203151	chr6	166997521	166998200	+	0	NA	promoter-TSS (NR_037504)	promoter-TSS (NR_037504)	52	NR_037504	100500857		NR_037504	ENSG00000265828	MIR3939	mir-3939	microRNA 3939	ncRNA
10227	chr1	62783421	62784680	+	0	NA	promoter-TSS (NM_178221)	promoter-TSS (NM_178221)	-56	NM_178221	84938		NM_032852	ENSG00000125703	ATG4C	APG4-C|APG4C|AUTL1|AUTL3|HsAPG4C	autophagy related 4C cysteine peptidase	protein-coding
210300	chr7	99457401	99457800	+	0	NA	TTS (NM_001318162)	TTS (NM_001318162)	8567	NM_001198879	100526740		NM_001198879	ENSG00000248919	ATP5MF-PTCD1	ATP5J2-PTCD1	ATP5MF-PTCD1 readthrough	protein-coding
146630	chr20	50189871	50191100	+	0	NA	promoter-TSS (NM_005194)	promoter-TSS (NM_005194)	-98	NM_001285878	1051		NM_005194	ENSG00000172216	CEBPB	C/EBP-beta|IL6DBP|NF-IL6|TCF5	CCAAT enhancer binding protein beta	protein-coding
138130	chr2	202298501	202299250	+	0	NA	intron (NM_015934, intron 12 of 14)	L1ME4c|LINE|L1	5824	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
163514	chr3	51397271	51397430	+	0	NA	TTS (NM_001349170)	TTS (NM_001349170)	6065	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
57282	chr12	121636401	121636730	+	0	NA	intron (NM_032790, intron 2 of 2)	MIRb|SINE|MIR	10015	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
26511	chr10	18663871	18664230	+	0	NA	intron (NM_178815, intron 1 of 5)	AluSx4|SINE|Alu	4619	NM_178815	221079		NM_178815	ENSG00000165997	ARL5B	ARL8	ADP ribosylation factor like GTPase 5B	protein-coding
238636	chrX	153966671	153967200	+	0	NA	intron (NM_005334, intron 1 of 25)	intron (NM_005334, intron 1 of 25)	-1830	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
202468	chr6	158222071	158222230	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	53800	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
91128	chr17	3710651	3711850	+	0	NA	Intergenic	Intergenic	-12653	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
82348	chr16	15958471	15959100	+	0	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	9169	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
43644	chr11	85647501	85648530	+	0	NA	promoter-TSS (NM_032273)	promoter-TSS (NM_032273)	48	NM_032273	84233		NM_032273	ENSG00000171202	TMEM126A	OPA7	transmembrane protein 126A	protein-coding
69948	chr14	99673721	99673980	+	0	NA	intron (NM_001127258, intron 8 of 8)	intron (NM_001127258, intron 8 of 8)	-10448	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
156631	chr22	41605551	41605850	+	0	NA	intron (NM_015704, intron 3 of 5)	L2b|LINE|L2	15343	NM_015704	27351		NM_015704	ENSG00000100418	DESI1	D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|POST|PPPDE2	desumoylating isopeptidase 1	protein-coding
95829	chr17	38801601	38802030	+	0	NA	non-coding (NR_073428, exon 11 of 11)	non-coding (NR_073428, exon 11 of 11)	-1910	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
91821	chr17	7132551	7134580	+	0	NA	Intergenic	Intergenic	-18754	NM_001181	433		NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
214698	chr7	150988201	150989680	+	0	NA	Intergenic	Intergenic	-2077	NM_000603	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
89407	chr16	88831151	88832150	+	0	NA	intron (NM_000512, intron 9 of 13)	CpG	-19722	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
177848	chr4	127997621	127998030	+	0	NA	intron (NM_001039717, intron 4 of 10)	(TCT)n|Simple_repeat|Simple_repeat	-31862	NM_152778	256471		NM_152778	ENSG00000164073	MFSD8	CCMD|CLN7	major facilitator superfamily domain containing 8	protein-coding
135868	chr2	170966571	170966730	+	0	NA	3' UTR (NM_001201428, exon 10 of 10)	3' UTR (NM_001201428, exon 10 of 10)	37397	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
129841	chr2	72887101	72888080	+	0	NA	exon (NM_003124, exon 1 of 3)	exon (NM_003124, exon 1 of 3)	182	NM_003124	6697		NM_003124	ENSG00000116096	SPR	SDR38C1	sepiapterin reductase	protein-coding
13596	chr1	116367701	116368550	+	0	NA	Intergenic	Intergenic	-5119	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
17794	chr1	159799651	159799750	+	0	NA	promoter-TSS (NM_001284217)	promoter-TSS (NM_001284217)	-812	NM_001284217	343413		NM_001004310	ENSG00000181036	FCRL6	FcRH6	Fc receptor like 6	protein-coding
12531	chr1	108560901	108561280	+	0	NA	intron (NM_001010883, intron 1 of 10)	intron (NM_001010883, intron 1 of 10)	990	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
224443	chr9	15372421	15372880	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	-50134	NM_001039697	6619		NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
141388	chr2	240818901	240819500	+	0	NA	promoter-TSS (NM_001379651)	promoter-TSS (NM_001379651)	77	NM_001379651	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
41062	chr11	65491951	65492450	+	0	NA	Intergenic	Intergenic	-5538	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
101113	chr17	65017321	65017700	+	0	NA	intron (NM_001282425, intron 3 of 3)	Charlie15a|DNA|hAT-Charlie	38264	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
225045	chr9	33162801	33163250	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-3923	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
29848	chr10	72348571	72348730	+	0	NA	intron (NR_157570, intron 1 of 8)	intron (NR_157570, intron 1 of 8)	6269	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
182018	chr5	55385351	55385450	+	0	NA	intron (NM_015360, intron 18 of 26)	L1M4b|LINE|L1	77411	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
219417	chr8	70675551	70675850	+	0	NA	intron (NM_001287260, intron 2 of 4)	MSTA-int|LTR|ERVL-MaLR	6361	NM_001287258	389668		NM_001011720	ENSG00000221947	XKR9	XRG9|hXKR9	XK related 9	protein-coding
238114	chrX	136643201	136643600	+	0	NA	TTS (NR_038461)	TTS (NR_038461)	3857	NR_038461	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
202496	chr6	158328051	158328380	+	0	NA	intron (NM_001007466, intron 1 of 12)	MIR|SINE|MIR	5233	NR_145798	109623462		NR_145798		SNORA116	-	small nucleolar RNA, H/ACA box 116	snoRNA
110011	chr19	1434251	1435330	+	0	NA	exon (NM_001352034, exon 12 of 12)	exon (NM_001352034, exon 12 of 12)	-3606	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
150091	chr21	37419321	37419800	+	0	NA	promoter-TSS (NM_130438)	promoter-TSS (NM_130438)	655	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
200510	chr6	135759871	135760030	+	0	NA	Intergenic	Intergenic	-91751	NM_018945	27115		NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
226990	chr9	83544471	83544630	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-6149	NM_174938	257019		NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
61634	chr13	73828951	73829050	+	0	NA	intron (NM_007249, intron 4 of 7)	intron (NM_007249, intron 4 of 7)	264756	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
164492	chr3	60079101	60079650	+	0	NA	intron (NR_135491, intron 1 of 6)	intron (NR_135491, intron 1 of 6)	1534	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
231184	chr9	129910521	129911000	+	0	NA	intron (NM_001363755, intron 11 of 15)	intron (NM_001363755, intron 11 of 15)	41155	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
105108	chr17	82202871	82203250	+	0	NA	intron (NM_001367828, intron 1 of 16)	MSTA|LTR|ERVL-MaLR	9782	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
29141	chr10	68598451	68598950	+	0	NA	intron (NM_030625, intron 2 of 11)	AluSx1|SINE|Alu	38363	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
168964	chr3	152387871	152388030	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-46960	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
148318	chr20	63746351	63746680	+	0	NA	3' UTR (NM_001369741, exon 5 of 5)	3' UTR (NM_001369741, exon 5 of 5)	6739	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
81094	chr16	4356751	4357200	+	0	NA	intron (NM_001351729, intron 26 of 27)	intron (NM_001351729, intron 26 of 27)	-5654	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
108183	chr18	63068071	63068230	+	0	NA	Intergenic	L1ME2|LINE|L1	251619	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
140090	chr2	231454071	231454600	+	0	NA	3' UTR (NM_005381, exon 14 of 14)	3' UTR (NM_005381, exon 14 of 14)	1601	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
135896	chr2	171163201	171163880	+	0	NA	intron (NM_001136554, intron 1 of 20)	MIR3|SINE|MIR	-2647	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
114160	chr19	11347701	11348080	+	0	NA	intron (NM_001080503, intron 1 of 10)	intron (NM_001080503, intron 1 of 10)	1371	NM_001080503	126075		NM_001080503	ENSG00000183401	CCDC159	-	coiled-coil domain containing 159	protein-coding
9170	chr1	45588701	45589150	+	0	NA	intron (NM_001195193, intron 1 of 12)	AluYf1|SINE|Alu	4884	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
217619	chr8	30015001	30015200	+	0	NA	Intergenic	AluSz|SINE|Alu	-57752	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
214666	chr7	150942101	150943100	+	0	NA	Intergenic	Intergenic	13204	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
46508	chr11	128421421	128421830	+	0	NA	Intergenic	MIRb|SINE|MIR	100685	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
86690	chr16	67524001	67524400	+	0	NA	intron (NR_104656, intron 1 of 1)	intron (NR_104656, intron 1 of 1)	4545	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
205439	chr7	17009201	17009600	+	0	NA	Intergenic	Intergenic	-127417	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
195558	chr6	37487901	37488100	+	0	NA	intron (NM_138493, intron 1 of 3)	intron (NM_138493, intron 1 of 3)	11893	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
135437	chr2	161171701	161171900	+	0	NA	intron (NM_001199135, intron 1 of 7)	intron (NM_001199135, intron 1 of 7)	11372	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
233905	chrX	1608171	1608750	+	0	NA	intron (NM_004043, intron 1 of 9)	intron (NM_004043, intron 1 of 9)	-6599	NM_001171038	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
217787	chr8	33509351	33509650	+	0	NA	intron (NM_025115, intron 2 of 6)	intron (NM_025115, intron 2 of 6)	3635	NM_001265581	80185		NM_025115	ENSG00000129696	TTI2	C8orf41|MRT39	TELO2 interacting protein 2	protein-coding
200767	chr6	137830571	137830800	+	0	NA	intron (NR_049793, intron 3 of 3)	intron (NR_049793, intron 3 of 3)	-36574	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
130769	chr2	86832201	86832630	+	0	NA	intron (NM_172101, intron 5 of 6)	AluSx|SINE|Alu	-24019	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
62436	chr13	99320801	99321630	+	0	NA	intron (NR_026644, intron 6 of 8)	intron (NR_026644, intron 6 of 8)	-13816	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
175321	chr4	68337401	68337600	+	0	NA	intron (NM_001031732, intron 3 of 16)	intron (NM_001031732, intron 3 of 16)	12590	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
189185	chr5	171415401	171416180	+	0	NA	Intergenic	AluSg|SINE|Alu	-3857	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
23905	chr1	234984501	234984900	+	0	NA	Intergenic	Intergenic	-20701	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
77124	chr15	79007171	79007350	+	0	NA	intron (NM_001145648, intron 13 of 26)	intron (NM_001145648, intron 13 of 26)	-1600	NM_153815	5923		NM_002891	ENSG00000058335	RASGRF1	CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1	Ras protein specific guanine nucleotide releasing factor 1	protein-coding
216463	chr8	19637851	19638180	+	0	NA	intron (NM_001354476, intron 1 of 8)	intron (NM_001354476, intron 1 of 8)	-35470	NM_001354499	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
42843	chr11	73141071	73141700	+	0	NA	intron (NM_014824, intron 1 of 19)	CpG	933	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
190916	chr6	2849701	2849930	+	0	NA	Intergenic	AluSx|SINE|Alu	4292	NR_039788	100616285		NR_039788	ENSG00000266750	MIR4645	mir-4645	microRNA 4645	ncRNA
132839	chr2	110732251	110733450	+	0	NA	intron (NM_001371254, intron 1 of 18)	CpG	277	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
50671	chr12	48829351	48829850	+	0	NA	TTS (NM_001206917)	TTS (NM_001206917)	11104	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
196247	chr6	42893921	42894180	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-3229	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
202837	chr6	159735401	159736030	+	0	NA	intron (NM_001322817, intron 2 of 7)	AluSg|SINE|Alu	8209	NM_001270533	9589		NM_004906	ENSG00000146457	WTAP	Mum2	WT1 associated protein	protein-coding
184222	chr5	96344771	96345780	+	0	NA	intron (NR_130776, intron 3 of 4)	intron (NR_130776, intron 3 of 4)	86884	NM_001177875	5122		NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC1/3|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
86665	chr16	67477751	67478250	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	3157	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
233655	chrX	991471	991730	+	0	NA	Intergenic	Intergenic	221049	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
126140	chr2	26175421	26176700	+	0	NA	intron (NM_001168241, intron 1 of 5)	intron (NM_001168241, intron 1 of 5)	2972	NM_001168241	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
219591	chr8	79891501	79891930	+	0	NA	Intergenic	CpG	-19978	NR_110954	101927040		NR_110954	ENSG00000249328	LOC101927040	-	uncharacterized LOC101927040	ncRNA
109090	chr18	79961271	79961630	+	0	NA	Intergenic	Intergenic	-3193	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
226646	chr9	74500001	74500200	+	0	NA	intron (NM_006914, intron 1 of 9)	intron (NM_006914, intron 1 of 9)	-1547	NR_125791	103752585		NR_125791		RORB-AS1	-	RORB antisense RNA 1	ncRNA
156709	chr22	41746471	41747100	+	0	NA	intron (NM_152513, intron 14 of 30)	intron (NM_152513, intron 14 of 30)	47282	NM_152513	150365		NM_152513	ENSG00000167077	MEI1	HYDM3|SPATA38	meiotic double-stranded break formation protein 1	protein-coding
127750	chr2	43665951	43666050	+	0	NA	intron (NM_172069, intron 2 of 29)	L1PA2|LINE|L1	10429	NM_001101330	728819		NM_001101330	ENSG00000223658	C1GALT1C1L	-	C1GALT1 specific chaperone 1 like	protein-coding
66030	chr14	58277451	58278150	+	0	NA	intron (NR_029435, intron 2 of 3)	FAM|SINE|Alu	-10233	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
196323	chr6	43100251	43100350	+	0	NA	intron (NM_001270398, intron 1 of 19)	AluYm1|SINE|Alu	23486	NM_001270398	5754		NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
162981	chr3	49711221	49711680	+	0	NA	intron (NR_135218, intron 26 of 38)	intron (NR_135218, intron 26 of 38)	8234	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
173135	chr4	6642921	6643430	+	0	NA	TTS (NM_033296)	TTS (NM_033296)	3084	NM_001272053	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
66541	chr14	61779701	61780380	+	0	NA	intron (NM_003082, intron 7 of 9)	HAL1|LINE|L1	17620	NM_003082	6617		NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
107614	chr18	48927251	48927980	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	15192	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
183540	chr5	80091651	80093280	+	0	NA	Intergenic	AluJr|SINE|Alu	-8800	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
46192	chr11	123434071	123434500	+	0	NA	intron (NM_001367421, intron 2 of 20)	intron (NM_001367421, intron 2 of 20)	4016	NM_001354837	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
9565	chr1	51734001	51734200	+	0	NA	intron (NM_148905, intron 1 of 18)	L2a|LINE|L2	4250	NM_001350210	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
221906	chr8	128682171	128682730	+	0	NA	Intergenic	Intergenic	-117771	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
11925	chr1	93616971	93617130	+	0	NA	intron (NM_001261409, intron 3 of 11)	intron (NM_001261409, intron 3 of 11)	-2953	NM_001261410	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
45300	chr11	118147251	118147880	+	0	NA	intron (NM_174934, intron 1 of 4)	intron (NM_174934, intron 1 of 4)	-2132	NM_001142349	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
109483	chr19	815021	816180	+	0	NA	intron (NM_001270366, intron 3 of 7)	intron (NM_001270366, intron 3 of 7)	2016	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	mir-3187	microRNA 3187	ncRNA
195770	chr6	40457851	40457950	+	0	NA	intron (NM_020737, intron 1 of 2)	MLT1I|LTR|ERVL-MaLR	79563	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
77625	chr15	85409771	85410130	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	29347	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
87017	chr16	68258951	68259050	+	0	NA	intron (NM_001363551, intron 5 of 5)	intron (NM_001363551, intron 5 of 5)	-5526	NM_003983	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
235393	chrX	45077521	45078000	+	0	NA	intron (NM_001291416, intron 18 of 28)	intron (NM_001291416, intron 18 of 28)	123116	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
211187	chr7	102600301	102600700	+	0	NA	intron (NM_001079877, intron 6 of 19)	intron (NM_001079877, intron 6 of 19)	16256	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
121150	chr19	46345871	46346320	+	0	NA	promoter-TSS (NM_006247)	promoter-TSS (NM_006247)	-992	NM_006247	5536		NM_006247	ENSG00000011485	PPP5C	PP5|PPP5|PPT	protein phosphatase 5 catalytic subunit	protein-coding
127578	chr2	42655301	42655700	+	0	NA	intron (NM_001282755, intron 7 of 17)	intron (NM_001282755, intron 7 of 17)	86868	NM_001330443	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
179571	chr4	185219571	185219730	+	0	NA	intron (NM_001378032, intron 1 of 19)	intron (NM_001378032, intron 1 of 19)	10093	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
86164	chr16	57763501	57763980	+	0	NA	intron (NR_134678, intron 12 of 18)	intron (NR_134678, intron 12 of 18)	8612	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
191257	chr6	5998901	6000880	+	0	NA	intron (NM_001278710, intron 3 of 3)	intron (NM_001278710, intron 3 of 3)	4154	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
165679	chr3	101868871	101869330	+	0	NA	Intergenic	Intergenic	19586	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
221656	chr8	125948571	125948950	+	0	NA	intron (NR_038446, intron 1 of 1)	AluSx1|SINE|Alu	2437	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
237683	chrX	124357601	124358080	+	0	NA	intron (NM_002351, intron 1 of 3)	AluYc|SINE|Alu	11277	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
223867	chr9	176141	177130	+	0	NA	intron (NM_018491, intron 1 of 14)	intron (NM_018491, intron 1 of 14)	2421	NM_018491	55871		NM_018491	ENSG00000172785	ZNG1A	CBWD1|COBP	Zn regulated GTPase metalloprotein activator 1A	protein-coding
70681	chr14	103093551	103094230	+	0	NA	Intergenic	Intergenic	-6254	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
220553	chr8	100710751	100711630	+	0	NA	intron (NM_002568, intron 7 of 14)	AluSx|SINE|Alu	-8166	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
74355	chr15	58650151	58650450	+	0	NA	intron (NM_001320570, intron 5 of 14)	L1MEg|LINE|L1	43307	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
218117	chr8	41514671	41515490	+	0	NA	Intergenic	Intergenic	-14181	NM_032336	84296		NM_032336	ENSG00000147536	GINS4	SLD5	GINS complex subunit 4	protein-coding
239414	chrY	56674821	56675080	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-279305	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
52437	chr12	55880821	55881080	+	0	NA	Intergenic	Intergenic	-38014	NM_002429	4327		NM_002429	ENSG00000123342	MMP19	CODA|MMP18|RASI-1	matrix metallopeptidase 19	protein-coding
212535	chr7	128846121	128846580	+	0	NA	exon (NM_001127487, exon 23 of 47)	exon (NM_001127487, exon 23 of 47)	15944	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
29918	chr10	73249971	73250400	+	0	NA	3' UTR (NM_016065, exon 3 of 3)	3' UTR (NM_016065, exon 3 of 3)	2459	NM_016065	51021		NM_016065	ENSG00000182180	MRPS16	CGI-132|COXPD2|MRP-S16|RPMS16|S16mt|bS16m	mitochondrial ribosomal protein S16	protein-coding
181415	chr5	40752071	40752430	+	0	NA	intron (NM_012382, intron 1 of 4)	Tigger1|DNA|TcMar-Tigger	3711	NM_012382	23548		NM_012382	ENSG00000113638	TTC33	OSRF	tetratricopeptide repeat domain 33	protein-coding
62103	chr13	94967671	94968180	+	0	NA	Intergenic	CpG	7884	NR_047487	100861544		NR_047487	ENSG00000260962	LINC00557	-	long intergenic non-protein coding RNA 557	ncRNA
188618	chr5	157203121	157203880	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	22660	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
17243	chr1	156337801	156339180	+	0	NA	promoter-TSS (NR_130913)	promoter-TSS (NR_130913)	-36	NR_130913	128229		NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding
52955	chr12	57463751	57463850	+	0	NA	intron (NM_001167609, intron 2 of 10)	intron (NM_001167609, intron 2 of 10)	3649	NM_001167609	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
158947	chr3	10166351	10166450	+	0	NA	intron (NM_001570, intron 1 of 12)	intron (NM_001570, intron 1 of 12)	1481	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
168250	chr3	141405821	141406480	+	0	NA	intron (NM_001376166, intron 2 of 2)	intron (NM_001376166, intron 2 of 2)	3136	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
16446	chr1	154577701	154578100	+	0	NA	3' UTR (NM_000748, exon 6 of 6)	3' UTR (NM_000748, exon 6 of 6)	10122	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
59732	chr13	29848921	29849700	+	0	NA	intron (NM_007106, intron 1 of 4)	intron (NM_007106, intron 1 of 4)	1307	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
230211	chr9	127828421	127828680	+	0	NA	intron (NM_001114753, intron 3 of 14)	intron (NM_001114753, intron 3 of 14)	12484	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
47658	chr12	6317421	6317800	+	0	NA	exon (NM_001144856, exon 9 of 16)	exon (NM_001144856, exon 9 of 16)	4477	NM_001144857	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
107713	chr18	49758001	49758250	+	0	NA	Intergenic	L2a|LINE|L2	55408	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
174351	chr4	38734201	38734800	+	0	NA	Intergenic	Intergenic	48490	NM_030956	81793		NM_030956	ENSG00000174123	TLR10	CD290	toll like receptor 10	protein-coding
140483	chr2	233186251	233187030	+	0	NA	intron (NM_001017915, intron 21 of 26).2	AluJo|SINE|Alu	-64931	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
67749	chr14	73710471	73711180	+	0	NA	TTS (NM_006029)	TTS (NM_006029)	3559	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
159333	chr3	13067551	13068250	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	5529	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
194528	chr6	33304101	33304730	+	0	NA	exon (NM_003190, exon 5 of 8).3	exon (NM_003190, exon 5 of 8).3	-5027	NM_001243738	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
61135	chr13	48573951	48574250	+	0	NA	Intergenic	Intergenic	6801	NR_051983	100129597		NR_051983	ENSG00000233610	LINC00462	-	long intergenic non-protein coding RNA 462	ncRNA
184008	chr5	90940401	90940880	+	0	NA	intron (NR_003149, intron 83 of 89)	intron (NR_003149, intron 83 of 89)	373762	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
151322	chr21	45573921	45574380	+	0	NA	Intergenic	Intergenic	-11125	NM_001352511	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
87834	chr16	75642171	75642530	+	0	NA	intron (NM_005548, intron 1 of 13)	AluSz6|SINE|Alu	5315	NM_001130089	3735		NM_005548	ENSG00000065427	KARS1	CMTRIB|DEAPLE|DFNB89|KARS|KARS2|KRS|LEPID	lysyl-tRNA synthetase 1	protein-coding
42913	chr11	73387021	73387880	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	10782	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
188485	chr5	154773421	154773680	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	16396	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
181688	chr5	50574271	50574780	+	0	NA	Intergenic	Intergenic	-91406	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
192348	chr6	24496421	24496750	+	0	NA	intron (NM_170740, intron 1 of 10)	MLT1B|LTR|ERVL-MaLR	1616	NM_001368954	7915		NM_001080	ENSG00000112294	ALDH5A1	SSADH|SSDH	aldehyde dehydrogenase 5 family member A1	protein-coding
12040	chr1	97942201	97942600	+	0	NA	promoter-TSS (NR_146275)	promoter-TSS (NR_146275)	-660	NR_146275	109729128		NR_146275		LINC01930	-	long intergenic non-protein coding RNA 1930	ncRNA
44328	chr11	102406051	102406550	+	0	NA	intron (NM_052932, intron 2 of 4)	intron (NM_052932, intron 2 of 4)	46465	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
237784	chrX	129784521	129784830	+	0	NA	intron (NM_018990, intron 1 of 7)	intron (NM_018990, intron 1 of 7)	4726	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
392	chr1	1050951	1051250	+	0	NA	intron (NM_198576, intron 30 of 35)	intron (NM_198576, intron 30 of 35)	-8634	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
185252	chr5	123511751	123513400	+	0	NA	intron (NM_001364146, intron 1 of 10)	CpG	398	NM_001270574	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
115434	chr19	15314601	15315130	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	17674	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
33950	chr10	124628921	124629380	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-74878	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
60632	chr13	42367851	42368350	+	0	NA	Intergenic	Intergenic	-56792	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
189269	chr5	172068121	172068880	+	0	NA	intron (NM_005990, intron 12 of 18)	L1MEf|LINE|L1	-61862	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
77272	chr15	81683421	81683550	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-309272	NM_001080532	342125		NM_181841	ENSG00000188869	TMC3	-	transmembrane channel like 3	protein-coding
159039	chr3	11273351	11274400	+	0	NA	intron (NM_001349236, intron 1 of 17)	L2a|LINE|L2	1478	NM_001144912	10533		NM_006395	ENSG00000197548	ATG7	APG7-LIKE|APG7L|GSA7|SCAR31	autophagy related 7	protein-coding
232036	chr9	133407851	133407950	+	0	NA	intron (NM_020385, intron 6 of 7)	intron (NM_020385, intron 6 of 7)	-6437	NR_024514	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
223438	chr8	143967801	143968080	+	0	NA	intron (NM_000445, intron 2 of 32)	AluSz|SINE|Alu	5589	NM_201378	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
201065	chr6	142569321	142570180	+	0	NA	intron (NR_027312, intron 1 of 2)	intron (NR_027312, intron 1 of 2)	68086	NR_027311	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
135992	chr2	172226271	172226680	+	0	NA	Intergenic	Intergenic	123469	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
40064	chr11	62751721	62752350	+	0	NA	3' UTR (NM_001363109, exon 2 of 2)	3' UTR (NM_001363109, exon 2 of 2)	2125	NM_001370809	79842		NM_024784	ENSG00000185670	ZBTB3	-	zinc finger and BTB domain containing 3	protein-coding
215410	chr7	157577971	157578130	+	0	NA	exon (NM_001308267, exon 17 of 22)	exon (NM_001308267, exon 17 of 22)	-3628	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
43145	chr11	75302351	75302650	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	32686	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
205294	chr7	10973051	10974500	+	0	NA	promoter-TSS (NR_033435)	promoter-TSS (NR_033435)	-97	NM_014660	9678		NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
78163	chr15	90440871	90441030	+	0	NA	intron (NM_003870, intron 7 of 37)	AluSq2|SINE|Alu	52708	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
80092	chr16	2006451	2006550	+	0	NA	intron (NM_178167, intron 3 of 13)	intron (NM_178167, intron 3 of 13)	3321	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
25285	chr10	6149721	6149980	+	0	NA	intron (NM_001282630, intron 1 of 14)	7SK|RNA|RNA	-2346	NR_036111	100422989		NR_036111	ENSG00000263628	MIR3155A	MIR3155|hsa-mir-3155a|mir-3155a	microRNA 3155a	ncRNA
178156	chr4	142350721	142351230	+	0	NA	intron (NM_001385334, intron 6 of 24)	LTR50|LTR|ERVL	-45031	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
84781	chr16	31009571	31009730	+	0	NA	intron (NM_052874, intron 1 of 9)	intron (NM_052874, intron 1 of 9)	988	NM_052874	112755		NM_052874	ENSG00000099365	STX1B	GEFSP9|STX1B1|STX1B2	syntaxin 1B	protein-coding
174678	chr4	41882001	41882200	+	0	NA	intron (NR_104143, intron 1 of 1)	CpG	511	NR_104143	101927074		NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA
186330	chr5	134647201	134649930	+	0	NA	promoter-TSS (NM_021982)	promoter-TSS (NM_021982)	-220	NM_001252231	10802		NM_021982	ENSG00000113615	SEC24A	-	SEC24 homolog A, COPII coat complex component	protein-coding
199621	chr6	119349201	119350800	+	0	NA	promoter-TSS (NM_005907)	promoter-TSS (NM_005907)	-239	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
235099	chrX	40465821	40466280	+	0	NA	Intergenic	Intergenic	-114920	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
11717	chr1	91875101	91875400	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	10901	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
105097	chr17	82126201	82128680	+	0	NA	intron (NM_001367828, intron 16 of 16)	CpG	-29204	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
6218	chr1	27491471	27491980	+	0	NA	Intergenic	AluSx|SINE|Alu	-1558	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
49372	chr12	22395571	22397430	+	0	NA	Intergenic	Intergenic	-61786	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
74406	chr15	58965101	58965300	+	0	NA	Intergenic	AluJo|SINE|Alu	-22463	NM_001270528	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
130381	chr2	85306821	85307950	+	0	NA	intron (NM_031283, intron 10 of 11)	intron (NM_031283, intron 10 of 11)	20604	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
71019	chr14	104766771	104767130	+	0	NA	Intergenic	LTR71B|LTR|ERV1	13803	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
75011	chr15	64013221	64013680	+	0	NA	intron (NM_001385000, intron 2 of 11)	intron (NM_001385000, intron 2 of 11)	33035	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
49901	chr12	39441651	39444280	+	0	NA	exon (NM_001378439, exon 1 of 38)	exon (NM_001378439, exon 1 of 38)	155	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
99699	chr17	50842771	50843580	+	0	NA	TTS (NM_001330341)	TTS (NM_001330341)	7589	NM_175575	124857		NM_175575	ENSG00000173714	WFIKKN2	GASP-1|WFDC20B|WFIKKNRP|hGASP-1	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding
183273	chr5	76474721	76475330	+	0	NA	intron (NM_006633, intron 2 of 35)	MER5A|DNA|hAT-Charlie	71740	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
207630	chr7	45025651	45026200	+	0	NA	intron (NM_001167934, intron 1 of 8)	HAL1ME|LINE|L1	-1709	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
69818	chr14	99216001	99217030	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	55682	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
85236	chr16	48246071	48246600	+	0	NA	intron (NM_031490, intron 1 of 14)	intron (NM_031490, intron 1 of 14)	1204	NM_001370497	85320		NM_032583	ENSG00000121270	ABCC11	EWWD|MRP8|WW	ATP binding cassette subfamily C member 11	protein-coding
143741	chr20	32361101	32361400	+	0	NA	intron (NM_001363734, intron 1 of 10)	AluJr|SINE|Alu	2185	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
107136	chr18	35122671	35123480	+	0	NA	intron (NR_046177, intron 4 of 6)	intron (NR_046177, intron 4 of 6)	81662	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
44964	chr11	116841851	116841950	+	0	NA	intron (NR_126362, intron 1 of 1)	AluYa5|SINE|Alu	-3950	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
63290	chr13	113975471	113975650	+	0	NA	Intergenic	Intergenic	-1484	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
27179	chr10	28548651	28549330	+	0	NA	intron (NM_100486, intron 3 of 12)	AluJb|SINE|Alu	15872	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
235142	chrX	41095471	41095630	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	10105	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
153740	chr22	29311851	29311950	+	0	NA	exon (NM_152236, exon 6 of 6)	exon (NM_152236, exon 6 of 6)	3797	NM_006477	10633		NM_006477	ENSG00000100276	RASL10A	RRP22	RAS like family 10 member A	protein-coding
9867	chr1	54300321	54300780	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	64107	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
204881	chr7	5997151	5997650	+	0	NA	exon (NM_000535, exon 7 of 15)	exon (NM_000535, exon 7 of 15)	11649	NM_001322012	5395		NM_000535	ENSG00000122512	PMS2	HNPCC4|LYNCH4|MLH4|MMRCS4|PMS-2|PMS2CL|PMSL2	PMS1 homolog 2, mismatch repair system component	protein-coding
139430	chr2	222866551	222866850	+	0	NA	intron (NM_001354159, intron 1 of 14)	intron (NM_001354159, intron 1 of 14)	5664	NM_001354158	2181		NM_004457	ENSG00000123983	ACSL3	ACS3|FACL3|LACS 3|LACS3|PRO2194	acyl-CoA synthetase long chain family member 3	protein-coding
48047	chr12	6970071	6971830	+	0	NA	promoter-TSS (NR_135131)	promoter-TSS (NR_135131)	37	NM_001320049	10436		NM_006331	ENSG00000126749	EMG1	C2F|Grcc2f|NEP1	EMG1 N1-specific pseudouridine methyltransferase	protein-coding
84992	chr16	31464651	31465550	+	0	NA	exon (NM_024742, exon 4 of 4)	exon (NM_024742, exon 4 of 4)	5599	NM_001105247	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
123109	chr19	51660901	51661200	+	0	NA	Intergenic	Intergenic	-14231	NM_001098612	100049587		NM_001098612	ENSG00000254415	SIGLEC14	-	sialic acid binding Ig like lectin 14	protein-coding
210539	chr7	100252701	100252900	+	0	NA	intron (NR_166147, intron 1 of 4)	AluSz6|SINE|Alu	19405	NR_028038	352954		NM_178831	ENSG00000291122	CASTOR3P	CASTOR3|GATS|STAG3OS	CASTOR family member 3, pseudogene	pseudo
164937	chr3	71221221	71221480	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	23727	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
69111	chr14	92513071	92514950	+	0	NA	intron (NM_024832, intron 1 of 9)	CpG	229	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
172967	chr4	3879371	3880170	+	0	NA	Intergenic	Intergenic	75658	NR_130742	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
190812	chr6	1391171	1391330	+	0	NA	promoter-TSS (NR_106778)	promoter-TSS (NR_106778)	-839	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
84823	chr16	31094271	31095590	+	0	NA	promoter-TSS (NM_024006)	promoter-TSS (NM_024006)	69	NM_206824	79001		NM_024006	ENSG00000167397	VKORC1	EDTP308|MST134|MST576|VKCFD2|VKOR	vitamin K epoxide reductase complex subunit 1	protein-coding
63265	chr13	113954571	113954950	+	0	NA	3' UTR (NM_001365455, exon 7 of 7)	3' UTR (NM_001365455, exon 7 of 7)	19316	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
186284	chr5	134548901	134549230	+	0	NA	intron (NM_001289985, intron 3 of 11)	L2a|LINE|L2	22957	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
130887	chr2	87421721	87422450	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-33342	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
156598	chr22	41539121	41539630	+	0	NA	intron (NM_138338, intron 3 of 6)	MER5A|DNA|hAT-Charlie	5095	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
233911	chrX	1648571	1649200	+	0	NA	Intergenic	Intergenic	33752	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
200889	chr6	138986021	138986780	+	0	NA	intron (NM_031922, intron 1 of 19)	intron (NM_031922, intron 1 of 19)	1853	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
116518	chr19	18167801	18169680	+	0	NA	exon (NM_005027, exon 15 of 16)	exon (NM_005027, exon 15 of 16)	-5073	NM_006332	10437		NM_006332	ENSG00000216490	IFI30	GILT|IFI-30|IP-30|IP30	IFI30 lysosomal thiol reductase	protein-coding
3454	chr1	15937701	15938180	+	0	NA	exon (NM_015001, exon 13 of 15)	exon (NM_015001, exon 13 of 15)	38161	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
217869	chr8	37843051	37844180	+	0	NA	3' UTR (NM_032777, exon 19 of 19)	3' UTR (NM_032777, exon 19 of 19)	6246	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
106971	chr18	31941051	31941400	+	0	NA	intron (NM_014939, intron 1 of 28)	AluSp|SINE|Alu	1903	NM_014939	22878		NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex subunit 8	protein-coding
214816	chr7	151231551	151231650	+	0	NA	promoter-TSS (NM_019015)	promoter-TSS (NM_019015)	-883	NM_001284295	54480		NM_019015	ENSG00000033100	CHPF2	CSGLCA-T|CSGlcAT|ChSy-3|chPF-2	chondroitin polymerizing factor 2	protein-coding
143412	chr20	29448821	29449450	+	0	NA	intron (NR_134504, intron 1 of 2)	(GCCTG)n|Simple_repeat|Simple_repeat	618	NR_134504	105379477		NR_134504		LOC105379477	-	uncharacterized LOC105379477	ncRNA
113762	chr19	10512201	10513180	+	0	NA	TTS (NM_001166215)	TTS (NM_001166215)	4757	NM_030760	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
184464	chr5	100682271	100682430	+	0	NA	Intergenic	L1M2|LINE|L1	134215	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
69450	chr14	94345821	94346780	+	0	NA	Intergenic	Intergenic	20402	NM_006220	390502		NM_006220	ENSG00000258597	SERPINA2	ARGS|ATR|PIL|SERPINA2P|psiATR	serpin family A member 2 (gene/pseudogene)	protein-coding
104030	chr17	80126501	80126900	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	20428	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
188992	chr5	167723371	167723530	+	0	NA	intron (NM_001368146, intron 1 of 27)	L2a|LINE|L2	-31479	NM_001080428	57451		NM_001080428	ENSG00000145934	TENM2	ODZ2|TEN-M2|TEN2|TNM2|ten-2	teneurin transmembrane protein 2	protein-coding
214531	chr7	150512451	150513350	+	0	NA	Intergenic	Intergenic	-1972	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
181293	chr5	39716321	39716670	+	0	NA	Intergenic	Intergenic	196064	NR_104632	101926940		NR_104632	ENSG00000271334	LINC02104	-	long intergenic non-protein coding RNA 2104	ncRNA
68402	chr14	80960951	80961050	+	0	NA	intron (NM_001142626, intron 1 of 8)	intron (NM_001142626, intron 1 of 8)	5379	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
92645	chr17	10198001	10199210	+	0	NA	promoter-TSS (NM_201433)	promoter-TSS (NM_201433)	1	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
163161	chr3	50163521	50164180	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	4831	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
186766	chr5	139332921	139333530	+	0	NA	Intergenic	7SK|RNA|RNA	-8607	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
27377	chr10	30928801	30929000	+	0	NA	intron (NM_001143771, intron 2 of 7)	HAL1|LINE|L1	70617	NM_001143769	220929		NM_182755	ENSG00000183621	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
165990	chr3	108095301	108095700	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	-4469	NM_001777	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
162458	chr3	48476551	48477150	+	0	NA	intron (NM_016479, intron 3 of 5)	intron (NM_016479, intron 3 of 5)	-3692	NM_001272083	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
179820	chr5	458901	459130	+	0	NA	intron (NM_007277, intron 6 of 12)	intron (NM_007277, intron 6 of 12)	13950	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
64854	chr14	35230821	35231300	+	0	NA	intron (NM_001256678, intron 4 of 6)	L1ME4b|LINE|L1	-47498	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
96924	chr17	42154451	42155650	+	0	NA	promoter-TSS (NM_001252039)	promoter-TSS (NM_001252039)	-61	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
166045	chr3	108631001	108631350	+	0	NA	intron (NM_014648, intron 8 of 32)	HAL1|LINE|L1	41453	NM_014648	9666		NM_014648	ENSG00000198919	DZIP3	PPP1R66|UURF2|hRUL138	DAZ interacting zinc finger protein 3	protein-coding
62078	chr13	94372471	94372630	+	0	NA	intron (NM_005708, intron 6 of 8)	L1PA3|LINE|L1	107132	NM_001922	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
26631	chr10	22475151	22475250	+	0	NA	Intergenic	Intergenic	-37271	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
44098	chr11	95802871	95803030	+	0	NA	intron (NM_014679, intron 2 of 10)	intron (NM_014679, intron 2 of 10)	12452	NM_014679	9702		NM_014679	ENSG00000166037	CEP57	MVA2|PIG8|TSP57	centrosomal protein 57	protein-coding
134389	chr2	136378551	136379280	+	0	NA	Intergenic	Intergenic	-260766	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
204387	chr7	3029421	3029680	+	0	NA	intron (NM_001324281, intron 1 of 25)	L1PA8|LINE|L1	14317	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
231352	chr9	130433001	130433650	+	0	NA	intron (NM_001291815, intron 97 of 97)	CpG	-11382	NM_000050	445		NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
93700	chr17	19385601	19386200	+	0	NA	intron (NM_002404, intron 3 of 5)	AluSx|SINE|Alu	1290	NM_001198695	4239		NM_002404	ENSG00000166482	MFAP4	-	microfibril associated protein 4	protein-coding
8014	chr1	38012251	38013830	+	0	NA	intron (NM_016037, intron 1 of 7)	CpG	306	NM_016037	51118		NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11 small subunit processome component	protein-coding
75640	chr15	67240201	67240690	+	0	NA	intron (NM_001271885, intron 1 of 9)	intron (NM_001271885, intron 1 of 9)	14216	NM_024666	79719		NM_024666	ENSG00000103591	AAGAB	KPPP1|PPKP1|PPKP1A|p34	alpha and gamma adaptin binding protein	protein-coding
112303	chr19	5874571	5874730	+	0	NA	Intergenic	AluSx|SINE|Alu	-4110	NM_002034	2527		NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding
77752	chr15	85754501	85754700	+	0	NA	TTS (NR_120366)	TTS (NR_120366)	4125	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
165646	chr3	101823601	101824180	+	0	NA	non-coding (NR_145993, exon 7 of 7)	non-coding (NR_145993, exon 7 of 7)	-4100	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
110005	chr19	1428671	1429530	+	0	NA	intron (NM_170711, intron 8 of 12)	CpG-13045	-9296	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
169432	chr3	161393951	161394500	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-21275	NM_001320679	165679		NM_145035	ENSG00000196542	SPTSSB	ADMP|C3orf57|SSSPTB	serine palmitoyltransferase small subunit B	protein-coding
32764	chr10	104330621	104330880	+	0	NA	intron (NM_001272013, intron 1 of 1)	MIRb|SINE|MIR	-1758	NM_001272012	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
19603	chr1	179817171	179817330	+	0	NA	Intergenic	Intergenic	13326	NR_162130	113219451		NR_162130		MIR12116	-	microRNA 12116	ncRNA
27668	chr10	33087071	33087500	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	29522	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
161423	chr3	41647751	41647850	+	0	NA	intron (NM_017886, intron 30 of 36)	L1PA4|LINE|L1	314303	NM_017886	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
170053	chr3	182800221	182800930	+	0	NA	intron (NM_014616, intron 1 of 29)	intron (NM_014616, intron 1 of 29)	7071	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
237298	chrX	115731771	115732840	+	0	NA	Intergenic	CpG	-108659	NR_147173	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
5594	chr1	26037551	26037880	+	0	NA	3' UTR (NM_001004434, exon 8 of 8)	3' UTR (NM_001004434, exon 8 of 8)	8403	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
120477	chr19	44744521	44744950	+	0	NA	Intergenic	AluJo|SINE|Alu	-3973	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
229071	chr9	114354151	114354250	+	0	NA	intron (NM_001317952, intron 13 of 20)	Tigger3b|DNA|TcMar-Tigger	24331	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
40998	chr11	65407771	65407930	+	0	NA	intron (NM_001300832, intron 9 of 9)	AluY|SINE|Alu	-14948	NR_028272	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
73046	chr15	40884421	40885480	+	0	NA	Intergenic	AluSq2|SINE|Alu	-9500	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
60415	chr13	40976021	40976780	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	5882	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
177910	chr4	129453751	129453850	+	0	NA	Intergenic	Intergenic	317678	NR_110753	101927282		NR_110753	ENSG00000246876	LINC02466	-	long intergenic non-protein coding RNA 2466	ncRNA
172355	chr4	1724801	1725200	+	0	NA	intron (NM_006342, intron 3 of 15)	AluSp|SINE|Alu	3479	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
125340	chr2	10817351	10817900	+	0	NA	intron (NM_001282706, intron 2 of 13)	intron (NM_001282706, intron 2 of 13)	-4786	NM_001282707	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
50209	chr12	46209151	46209590	+	0	NA	intron (NM_001278387, intron 6 of 17)	intron (NM_001278387, intron 6 of 17)	57146	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
174857	chr4	48674701	48675300	+	0	NA	intron (NM_015030, intron 3 of 63)	Tigger13a|DNA|TcMar-Tigger	105279	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
219638	chr8	80170621	80171810	+	0	NA	promoter-TSS (NR_105036)	promoter-TSS (NR_105036)	-94	NR_105037	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
125875	chr2	24577451	24577750	+	0	NA	intron (NM_001362955, intron 3 of 23)	Kanga11a|DNA|TcMar-Tc2	-6877	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
54870	chr12	95566971	95567130	+	0	NA	Intergenic	Intergenic	-15574	NM_032147	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
28785	chr10	62062971	62063330	+	0	NA	intron (NM_001244638, intron 4 of 6)	intron (NM_001244638, intron 4 of 6)	13793	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
102513	chr17	75784131	75786050	+	0	NA	promoter-TSS (NR_039892)	promoter-TSS (NR_039892)	251	NR_038131	85451		NM_001080419	ENSG00000132478	UNK	UNKEMPT|ZC3H5|ZC3HDC5	unk zinc finger	protein-coding
95492	chr17	36255401	36255800	+	0	NA	exon (NM_001291465, exon 13 of 14).4	exon (NM_001291465, exon 13 of 14).4	8913	NM_001291465	101060389		NM_001123390	ENSG00000274419	TBC1D3D	PRC17|TBC1D3|TBC1D3A|TBC1D3H	TBC1 domain family member 3D	protein-coding
196874	chr6	50724401	50724600	+	0	NA	intron (NM_172238, intron 3 of 7)	CpG	10974	NM_172238	83741		NM_172238	ENSG00000008197	TFAP2D	AP-2delta|TFAP2BL1	transcription factor AP-2 delta	protein-coding
20054	chr1	185560871	185561100	+	0	NA	intron (NR_110793, intron 3 of 3)	LTR33|LTR|ERVL	67503	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
112009	chr19	5001521	5001880	+	0	NA	intron (NM_001370093, intron 1 of 11)	L1MC4a|LINE|L1	32587	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
13282	chr1	112948771	112948930	+	0	NA	intron (NM_003051, intron 1 of 4)	AluY|SINE|Alu	7213	NM_001166496	6566		NM_003051	ENSG00000155380	SLC16A1	HHF7|MCT|MCT1|MCT1D	solute carrier family 16 member 1	protein-coding
96368	chr17	40097551	40097650	+	0	NA	intron (NM_021724, intron 1 of 7)	intron (NM_021724, intron 1 of 7)	2989	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
180973	chr5	35780021	35780680	+	0	NA	intron (NM_024867, intron 30 of 36)	intron (NM_024867, intron 30 of 36)	-76541	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
195123	chr6	35668751	35668850	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	-4011	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
132928	chr2	111434721	111434980	+	0	NA	intron (NR_024373, intron 1 of 1)	MER5A|DNA|hAT-Charlie	60311	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
59474	chr13	26186051	26188700	+	0	NA	intron (NM_183045, intron 5 of 5)	intron (NM_183045, intron 5 of 5)	34382	NM_183044	6049		NM_005977	ENSG00000127870	RNF6	-	ring finger protein 6	protein-coding
234219	chrX	12979851	12980780	+	0	NA	Intergenic	AluSz|SINE|Alu	5205	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
148975	chr21	13979821	13981150	+	0	NA	promoter-TSS (NR_027270)	promoter-TSS (NR_027270)	-41	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
16628	chr1	155091321	155092630	+	0	NA	Intergenic	Intergenic	13138	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
19069	chr1	170067321	170067980	+	0	NA	5' UTR (NM_001204517, exon 1 of 20)	5' UTR (NM_001204517, exon 1 of 20)	1265	NM_001204517	22920		NM_014970	ENSG00000075945	KIFAP3	FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1	kinesin associated protein 3	protein-coding
104217	chr17	80605251	80605950	+	0	NA	intron (NM_020761, intron 1 of 33)	intron (NM_020761, intron 1 of 33)	60762	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
160757	chr3	32577671	32578400	+	0	NA	Intergenic	Intergenic	-7111	NM_001329135	51143		NM_016141	ENSG00000144635	DYNC1LI1	DLC-A|DLIC-1|DNCLI1|LIC1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding
193883	chr6	31585171	31585850	+	0	NA	promoter-TSS (NR_029462)	promoter-TSS (NR_029462)	-767	NR_029461	7940		NM_007161	ENSG00000204482	LST1	B144|D6S49E|LST-1	leukocyte specific transcript 1	protein-coding
176121	chr4	83085121	83085630	+	0	NA	Intergenic	LTR13A|LTR|ERVK	24514	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
237266	chrX	110408101	110408380	+	0	NA	intron (NM_001385449, intron 1 of 3)	intron (NM_001385449, intron 1 of 3)	-10817	NM_020769	57529		NM_020769	ENSG00000243978	RTL9	MAR9|MART9|RGAG1|SIRH10	retrotransposon Gag like 9	protein-coding
232584	chr9	136398371	136398530	+	0	NA	promoter-TSS (NM_003086)	promoter-TSS (NM_003086)	-13	NM_003086	6621		NM_003086	ENSG00000165684	SNAPC4	NEDRSO|PTFalpha|SNAP190	small nuclear RNA activating complex polypeptide 4	protein-coding
131704	chr2	97744651	97744750	+	0	NA	Intergenic	Intergenic	11400	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
79767	chr16	1364701	1365330	+	0	NA	TTS (NM_032520)	TTS (NM_032520)	13084	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
205788	chr7	23637071	23637830	+	0	NA	intron (NM_138771, intron 3 of 3)	SVA_E|Retroposon|SVA	40068	NM_138771	90693		NM_138771	ENSG00000169193	CCDC126	-	coiled-coil domain containing 126	protein-coding
20542	chr1	198698971	198699980	+	0	NA	intron (NM_002838, intron 4 of 32)	intron (NM_002838, intron 4 of 32)	60435	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
170359	chr3	184570471	184570830	+	0	NA	intron (NM_004443, intron 1 of 15)	intron (NM_004443, intron 1 of 15)	8865	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
208703	chr7	73291671	73292830	+	0	NA	Intergenic	Intergenic	16576	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
57596	chr12	122423801	122424530	+	0	NA	Intergenic	AluSx|SINE|Alu	-1496	NM_198240	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
53794	chr12	69154371	69155350	+	0	NA	Intergenic	Tigger8|DNA|TcMar-Tigger	-84709	NM_007007	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
106308	chr18	12880121	12880780	+	0	NA	intron (NM_080422, intron 1 of 9)	intron (NM_080422, intron 1 of 9)	3787	NM_002828	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
204014	chr7	1907871	1908430	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	32421	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
212902	chr7	130892751	130892850	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-15261	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
208954	chr7	74182451	74182850	+	0	NA	intron (NM_022170, intron 1 of 6)	AluJb|SINE|Alu	8294	NM_022170	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
37454	chr11	18222871	18223030	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	13665	NR_026563	494141		NR_026541	ENSG00000290742	SLC25A51P4	-	SLC25A51 pseudogene 4	pseudo
202885	chr6	159977001	159977830	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	8333	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
577	chr1	1271901	1272100	+	0	NA	intron (NM_194458, intron 1 of 6)	AluSp|SINE|Alu	1854	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
36598	chr11	6734601	6734830	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-12836	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
25496	chr10	7045021	7045280	+	0	NA	Intergenic	Intergenic	141634	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
156566	chr22	41457371	41457950	+	0	NA	Intergenic	Intergenic	-10859	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
135618	chr2	168178551	168179050	+	0	NA	intron (NM_013233, intron 2 of 17)	intron (NM_013233, intron 2 of 17)	68795	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
72462	chr15	32401601	32401800	+	0	NA	intron (NM_001282493, intron 1 of 18)	intron (NM_001282493, intron 1 of 18)	1592	NM_001282493	653125		NM_001282493	ENSG00000249931	GOLGA8K	-	golgin A8 family member K	protein-coding
131953	chr2	99401671	99402030	+	0	NA	TTS (NM_015904)	TTS (NM_015904)	64461	NM_015904	9669		NM_015904	ENSG00000158417	EIF5B	IF2	eukaryotic translation initiation factor 5B	protein-coding
127986	chr2	46923101	46923500	+	0	NA	intron (NM_001288953, intron 2 of 20)	MER21B|LTR|ERVL	-7188	NM_001171507	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
24954	chr10	1755651	1755750	+	0	NA	Intergenic	Intergenic	-18175	NM_018702	105		NM_018702	ENSG00000185736	ADARB2	ADAR3|RED2	adenosine deaminase RNA specific B2 (inactive)	protein-coding
117107	chr19	19199221	19199550	+	0	NA	intron (NM_134440, intron 8 of 8)	intron (NM_134440, intron 8 of 8)	4029	NM_176880	126382		NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
1968	chr1	6593101	6593350	+	0	NA	3' UTR (NM_001324309, exon 4 of 4)	3' UTR (NM_001324309, exon 4 of 4)	9644	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
134083	chr2	131522451	131523000	+	0	NA	Intergenic	Intergenic	-4950	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
208604	chr7	72950571	72951280	+	0	NA	3' UTR (NM_001257190, exon 16 of 16)	3' UTR (NM_001257190, exon 16 of 16)	3838	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
212652	chr7	129504801	129505200	+	0	NA	intron (NM_001195243, intron 1 of 1)	L2b|LINE|L2	2469	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
88736	chr16	86318071	86318330	+	0	NA	Intergenic	MIRb|SINE|MIR	27479	NR_024406	732275		NR_024406	ENSG00000168367	LINC00917	-	long intergenic non-protein coding RNA 917	ncRNA
135485	chr2	161501021	161501280	+	0	NA	non-coding (NR_077058, exon 1 of 1)	non-coding (NR_077058, exon 1 of 1)	6752	NR_077058	285116		NR_077058		AHCTF1P1	AHCTF1P|ELYS-like	AT-hook containing transcription factor 1 pseudogene 1	pseudo
12611	chr1	109089021	109089550	+	0	NA	Intergenic	Intergenic	-1479	NM_020141	56900		NM_020141	ENSG00000215717	TMEM167B	AD-020|C1orf119	transmembrane protein 167B	protein-coding
34713	chr10	133520151	133520680	+	0	NA	Intergenic	CpG	-6948	NM_000773	1571		NM_000773	ENSG00000130649	CYP2E1	CPE1|CYP2E|P450-J|P450C2E	cytochrome P450 family 2 subfamily E member 1	protein-coding
186798	chr5	139374471	139374630	+	0	NA	intron (NM_152685, intron 13 of 14)	MIRb|SINE|MIR	8747	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
217735	chr8	30666771	30667230	+	0	NA	Intergenic	Intergenic	-8764	NM_002095	2961		NM_002095	ENSG00000197265	GTF2E2	FE|TF2E2|TFIIE-B|TTD6	general transcription factor IIE subunit 2	protein-coding
131603	chr2	96876071	96876450	+	0	NA	3' UTR (NM_001122646, exon 17 of 17)	3' UTR (NM_001122646, exon 17 of 17)	-6180	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
96677	chr17	40963901	40964100	+	0	NA	intron (NM_213656, intron 2 of 6)	intron (NM_213656, intron 2 of 6)	2948	NM_213656	390792		NM_213656	ENSG00000196859	KRT39	CK-39|K39|KA35	keratin 39	protein-coding
209395	chr7	76321371	76321730	+	0	NA	Intergenic	AluSz6|SINE|Alu	18877	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
138252	chr2	203240751	203241080	+	0	NA	intron (NM_001371705, intron 1 of 9)	L2a|LINE|L2	1574	NM_001371698	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
37232	chr11	14502001	14502350	+	0	NA	Intergenic	AluJr|SINE|Alu	-2306	NM_001144062	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
90546	chr17	1498371	1498530	+	0	NA	intron (NM_016532, intron 7 of 11)	intron (NM_016532, intron 7 of 11)	-5764	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
130506	chr2	85594651	85597430	+	0	NA	intron (NM_016494, intron 1 of 4)	intron (NM_016494, intron 1 of 4)	295	NM_016494	51255		NM_016494	ENSG00000168894	RNF181	HSPC238	ring finger protein 181	protein-coding
189137	chr5	171309201	171309750	+	0	NA	exon (NM_021025, exon 1 of 3)	exon (NM_021025, exon 1 of 3)	227	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
97331	chr17	43265201	43265700	+	0	NA	Intergenic	Intergenic	1373	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
4604	chr1	22089021	22089300	+	0	NA	intron (NM_001791, intron 5 of 5)	intron (NM_001791, intron 5 of 5)	36451	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
80322	chr16	2426971	2427430	+	0	NA	TTS (NR_003574)	TTS (NR_003574)	-2247	NM_001761	899		NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1|FTDALS5	cyclin F	protein-coding
122778	chr19	50266901	50267180	+	0	NA	intron (NM_024729, intron 21 of 40)	intron (NM_024729, intron 21 of 40)	62031	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
223361	chr8	143872401	143872600	+	0	NA	exon (NM_031308, exon 2 of 2)	exon (NM_031308, exon 2 of 2)	5967	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238561	chrX	153800271	153800630	+	0	NA	Intergenic	Intergenic	5782	NM_006280	6748		NM_006280	ENSG00000180879	SSR4	CDG1Y|TRAPD	signal sequence receptor subunit 4	protein-coding
144594	chr20	35798371	35798950	+	0	NA	intron (NM_016436, intron 1 of 17)	AluSp|SINE|Alu	26645	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
61514	chr13	53439751	53439850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-287900	NR_125788	102723875		NR_125788		LINC01065	-	long intergenic non-protein coding RNA 1065	ncRNA
89894	chr16	89685071	89685230	+	0	NA	Intergenic	MER9a3|LTR|ERVK	-1539	NR_027703	8558		NM_003674	ENSG00000185324	CDK10	ALSAS|PISSLRE	cyclin dependent kinase 10	protein-coding
17284	chr1	156429771	156430950	+	0	NA	promoter-TSS (NR_168070)	promoter-TSS (NR_168070)	-812	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
71340	chr14	105427171	105427530	+	0	NA	intron (NM_001203258, intron 1 of 20)	Tigger17a|DNA|TcMar-Tigger	7523	NM_001203258	9112		NM_004689	ENSG00000182979	MTA1	-	metastasis associated 1	protein-coding
172948	chr4	3526071	3526550	+	0	NA	intron (NM_002337, intron 1 of 7)	intron (NM_002337, intron 1 of 7)	5839	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
197163	chr6	59592651	59593150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1631454	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
54025	chr12	75506701	75506930	+	0	NA	exon (NM_007043, exon 3 of 10)	exon (NM_007043, exon 3 of 10)	4794	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
158640	chr3	4988771	4989130	+	0	NA	Intergenic	Intergenic	-8989	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
84465	chr16	30457321	30457650	+	0	NA	Intergenic	Intergenic	-11611	NM_012248	22928		NM_012248	ENSG00000179918	SEPHS2	SPS2	selenophosphate synthetase 2	protein-coding
191081	chr6	3685951	3686250	+	0	NA	Intergenic	Intergenic	65613	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
13966	chr1	120416451	120416550	+	0	NA	intron (NR_102404, intron 2 of 23)	AluJb|SINE|Alu	1473	NR_102404	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
194601	chr6	33456301	33456500	+	0	NA	exon (NM_152735, exon 2 of 2)	exon (NM_152735, exon 2 of 2)	1824	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
38380	chr11	44724051	44724350	+	0	NA	Intergenic	AluSc5|SINE|Alu	-2762	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
120499	chr19	44769651	44769750	+	0	NA	Intergenic	Intergenic	-8169	NM_001130852	23624		NM_012116	ENSG00000142273	CBLC	CBL-3|CBL-SL|RNF57	Cbl proto-oncogene C	protein-coding
168207	chr3	141236501	141236700	+	0	NA	intron (NM_152282, intron 3 of 7)	intron (NM_152282, intron 3 of 7)	4775	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
20746	chr1	200975521	200976150	+	0	NA	intron (NM_017596, intron 31 of 33)	intron (NM_017596, intron 31 of 33)	46891	NR_147176	647215		NR_147176	ENSG00000293444	MROH3P	C1orf81	maestro heat like repeat family member 3, pseudogene	pseudo
56269	chr12	112026001	112026250	+	0	NA	TTS (NM_024953)	TTS (NM_024953)	11590	NR_037430	100500889		NR_037430	ENSG00000266370	MIR3657	-	microRNA 3657	ncRNA
137751	chr2	197922701	197922900	+	0	NA	intron (NM_006226, intron 1 of 5)	SVA_F|Retroposon|SVA	118207	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
57792	chr12	123076601	123077650	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-4259	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
21048	chr1	203267421	203268030	+	0	NA	Intergenic	Intergenic	-19427	NR_117097	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
107278	chr18	44579101	44579300	+	0	NA	Intergenic	Intergenic	47421	NR_131768	105667213		NR_131768		LINC01601	-	long intergenic non-protein coding RNA 1601	ncRNA
210728	chr7	100615001	100615200	+	0	NA	intron (NM_001040097, intron 5 of 5)	intron (NM_001040097, intron 5 of 5)	2560	NM_001040099	64598		NM_023948	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
133065	chr2	112411171	112411630	+	0	NA	intron (NM_005054, intron 7 of 22).3	AluY|SINE|Alu	22214	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
49862	chr12	35917351	35917450	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1894904	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
84490	chr16	30488801	30489200	+	0	NA	intron (NM_002209, intron 9 of 30)	intron (NM_002209, intron 9 of 30)	-14919	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
136141	chr2	174249851	174250380	+	0	NA	Intergenic	Intergenic	-1583	NM_013341	29789		NM_013341	ENSG00000138430	OLA1	DOC45|GBP45|GTBP9|GTPBP9|PTD004	Obg like ATPase 1	protein-coding
148641	chr21	6034951	6035050	+	0	NA	Intergenic	Intergenic	-24029	NR_136540	102724354		NR_136540	ENSG00000280191	LOC102724354	LINC01669	long intergenic non-protein coding RNA 1669	ncRNA
48451	chr12	9738221	9738480	+	0	NA	Intergenic	AluSx|SINE|Alu	-5051	NM_001253750	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
1882	chr1	6431551	6432500	+	0	NA	intron (NM_031475, intron 2 of 12)	MIR3|SINE|MIR	-2129	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
235226	chrX	41374621	41375030	+	0	NA	Intergenic	Intergenic	40659	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
90308	chr17	1096221	1097580	+	0	NA	intron (NM_001322840, intron 3 of 22).2	intron (NM_001322840, intron 3 of 22).2	12202	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
115844	chr19	16524801	16525000	+	0	NA	intron (NM_006387, intron 10 of 16)	intron (NM_006387, intron 10 of 16)	17537	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
200253	chr6	132484201	132484680	+	0	NA	intron (NR_137169, intron 2 of 8)	intron (NR_137169, intron 2 of 8)	28343	NM_001326578	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
194951	chr6	35269521	35269780	+	0	NA	intron (NM_003427, intron 1 of 13)	intron (NM_003427, intron 1 of 13)	9915	NM_001292032	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
198011	chr6	90104371	90104700	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	192308	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
175406	chr4	70845171	70845530	+	0	NA	Intergenic	AluSx|SINE|Alu	-5460	NM_002092	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
113598	chr19	10286051	10286150	+	0	NA	promoter-TSS (NM_001544)	promoter-TSS (NM_001544)	-855	NM_001039132	3386		NM_001544	ENSG00000105371	ICAM4	CD242|LW	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	protein-coding
236991	chrX	101619571	101619730	+	0	NA	Intergenic	Intergenic	-1649	NM_001184768	54470		NM_019007	ENSG00000198960	ARMCX6	GASP10	armadillo repeat containing X-linked 6	protein-coding
153518	chr22	26542751	26543200	+	0	NA	intron (NM_001362922, intron 1 of 5)	MIRb|SINE|MIR	12348	NR_031615	100313914		NR_031615	ENSG00000221760	MIR548J	MIRN548J|hsa-mir-548j	microRNA 548j	ncRNA
69617	chr14	97618501	97618930	+	0	NA	Intergenic	L1MD1|LINE|L1	67943	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
121107	chr19	45934601	45935230	+	0	NA	3' UTR (NM_002516, exon 4 of 4)	3' UTR (NM_002516, exon 4 of 4)	-20137	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
91293	chr17	4173801	4174000	+	0	NA	intron (NM_001330063, intron 20 of 24)	intron (NM_001330063, intron 20 of 24)	30203	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
156762	chr22	41844671	41845100	+	0	NA	intron (NR_103834, intron 1 of 21)	intron (NR_103834, intron 1 of 21)	-10220	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
191200	chr6	5398501	5398770	+	0	NA	intron (NM_001375260, intron 2 of 6)	L1MC4a|LINE|L1	59440	NR_125847	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
146492	chr20	49883821	49884780	+	0	NA	intron (NR_048540, intron 10 of 11)	(CA)n|Simple_repeat|Simple_repeat	20441	NR_162136	113219455		NR_162136		MIR12122	-	microRNA 12122	ncRNA
50925	chr12	49338951	49339700	+	0	NA	Intergenic	(CTCC)n|Simple_repeat|Simple_repeat	-2137	NM_001008223	338761		NM_001008223	ENSG00000186897	C1QL4	C1QTNF11|CTRP11	complement C1q like 4	protein-coding
170585	chr3	186875851	186875950	+	0	NA	Intergenic	AluJo|SINE|Alu	-14532	NR_046662	100874095		NR_046662	ENSG00000226482	ADIPOQ-AS1	-	ADIPOQ antisense RNA 1	ncRNA
98585	chr17	47730521	47731100	+	0	NA	Intergenic	Intergenic	-2426	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
111986	chr19	4908951	4910350	+	0	NA	promoter-TSS (NM_001290052)	promoter-TSS (NM_001290052)	149	NM_001048201	29128		NM_013282	ENSG00000276043	UHRF1	ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95	ubiquitin like with PHD and ring finger domains 1	protein-coding
33452	chr10	119042251	119042780	+	0	NA	exon (NM_003750, exon 19 of 22)	exon (NM_003750, exon 19 of 22)	12801	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
85125	chr16	34585601	34585930	+	0	NA	Intergenic	Intergenic	-204285	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
188274	chr5	151099701	151100200	+	0	NA	TTS (NM_001155)	TTS (NM_001155)	-12265	NM_001252390	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
90742	chr17	2031951	2032550	+	0	NA	intron (NR_144474, intron 1 of 12)	intron (NR_144474, intron 1 of 12)	2097	NM_001383	1801		NM_001383	ENSG00000108963	DPH1	DEDSSH|DPH2L|DPH2L1|OVCA1	diphthamide biosynthesis 1	protein-coding
57981	chr12	124032301	124032600	+	0	NA	intron (NM_001347902, intron 2 of 4)	intron (NM_001347902, intron 2 of 4)	59235	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
194865	chr6	34530471	34530830	+	0	NA	intron (NM_001199583, intron 8 of 9)	intron (NM_001199583, intron 8 of 9)	15778	NM_001199583	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
33234	chr10	114171271	114171630	+	0	NA	intron (NM_018017, intron 1 of 15)	AluJr4|SINE|Alu	2729	NR_031747	100302224		NR_031747	ENSG00000284442	MIR2110	hsa-mir-2110|mir-2110	microRNA 2110	ncRNA
954	chr1	1750621	1751150	+	0	NA	TTS (NM_023018)	TTS (NM_023018)	-4886	NM_001199787	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
4421	chr1	21255151	21255900	+	0	NA	intron (NM_001397, intron 8 of 18)	intron (NM_001397, intron 8 of 18)	24090	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
124336	chr19	58278201	58279900	+	0	NA	promoter-TSS (NM_021089)	promoter-TSS (NM_021089)	84	NR_144447	108903150		NR_144447	ENSG00000267216	ZNF8-ERVK3-1	-	ZNF8-ERVK3-1 readthrough (NMD candidate)	ncRNA
114056	chr19	11035551	11036430	+	0	NA	intron (NM_001374457, intron 28 of 33)	intron (NM_001374457, intron 28 of 33)	51866	NM_001128846	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
158996	chr3	10322251	10322800	+	0	NA	Intergenic	Intergenic	-1337	NM_001278946	6396		NM_030673	ENSG00000157020	SEC13	D3S1231E|SEC13L1|SEC13R|npp-20	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding
118916	chr19	38728951	38729050	+	0	NA	exon (NM_001322033, exon 20 of 21)	exon (NM_001322033, exon 20 of 21)	15474	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
130702	chr2	86622851	86624330	+	0	NA	5' UTR (NM_001198952, exon 1 of 3)	5' UTR (NM_001198952, exon 1 of 3)	275	NM_005667	7844		NM_005667	ENSG00000239305	RNF103	HKF-1|KF-1|KF1|ZFP-103|ZFP103	ring finger protein 103	protein-coding
88532	chr16	85416201	85416730	+	0	NA	Intergenic	Intergenic	-110140	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
26339	chr10	15196071	15196650	+	0	NA	Intergenic	Intergenic	-27667	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
221735	chr8	127658321	127658580	+	0	NA	Intergenic	L1PB2|LINE|L1	75517	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
70187	chr14	100406301	100407300	+	0	NA	intron (NM_001350949, intron 2 of 6)	L2c|LINE|L2	30315	NM_001350947	79446		NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
194739	chr6	33860071	33860230	+	0	NA	Intergenic	Intergenic	36757	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
199508	chr6	118693551	118693850	+	0	NA	intron (NM_001178035, intron 1 of 13)	MLT1N2|LTR|ERVL-MaLR	16375	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
167881	chr3	135659151	135659250	+	0	NA	Intergenic	L1PA2|LINE|L1	-306528	NM_002718	5523		NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
2813	chr1	11015351	11015450	+	0	NA	intron (NM_007375, intron 2 of 5)	AluSx|SINE|Alu	2746	NM_007375	23435		NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding
102132	chr17	75069601	75070000	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-17965	NM_001271765	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
230354	chr9	128034821	128035800	+	0	NA	Intergenic	Intergenic	32010	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
50717	chr12	48959451	48959700	+	0	NA	Intergenic	AluJo|SINE|Alu	-2088	NM_001659	377		NM_001659	ENSG00000134287	ARF3	-	ADP ribosylation factor 3	protein-coding
128131	chr2	48338171	48338530	+	0	NA	intron (NM_001375445, intron 3 of 7)	LTR40c|LTR|ERVL	23668	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
113566	chr19	10255551	10256100	+	0	NA	intron (NM_146387, intron 5 of 9)	intron (NM_146387, intron 5 of 9)	3611	NM_015956	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
192367	chr6	24699951	24700050	+	0	NA	intron (NM_018473, intron 2 of 2)	intron (NM_018473, intron 2 of 2)	19154	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
172589	chr4	2478421	2479250	+	0	NA	intron (NM_001185009, intron 2 of 8)	THE1B-int|LTR|ERVL-MaLR	9382	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
23500	chr1	228734821	228735800	+	0	NA	promoter-TSS (NM_021205)	promoter-TSS (NM_021205)	-169	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
221869	chr8	128382021	128382280	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	182529	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
106645	chr18	22838901	22839300	+	0	NA	Intergenic	LTR36|LTR|ERV1	-52263	NR_110782	101927571		NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
137939	chr2	201118201	201120480	+	0	NA	TTS (NR_147252)	TTS (NR_147252)	624	NM_001127183	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
215829	chr8	6690251	6690750	+	0	NA	intron (NR_125386, intron 1 of 4)	L1MEf|LINE|L1	17709	NR_125386	100507530		NR_125386		MCPH1-AS1	-	MCPH1 antisense RNA 1	ncRNA
193259	chr6	29954321	29954930	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	12093	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
207937	chr7	50899171	50899450	+	0	NA	Intergenic	L1PA2|LINE|L1	-105857	NM_001371008	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
174214	chr4	37683951	37684250	+	0	NA	intron (NM_001085400, intron 1 of 6)	AluY|SINE|Alu	2276	NM_001085399	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
139375	chr2	221567321	221567580	+	0	NA	intron (NM_001304537, intron 1 of 16)	intron (NM_001304537, intron 1 of 16)	4854	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
12319	chr1	100943051	100943550	+	0	NA	intron (NM_133496, intron 8 of 10)	MER21B|LTR|ERVL	47210	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
213189	chr7	132487021	132487280	+	0	NA	intron (NM_181775, intron 4 of 4)	MamSINE1|SINE|tRNA-RTE	89320	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
186562	chr5	138471251	138471950	+	0	NA	Intergenic	AluSx1|SINE|Alu	6121	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
140158	chr2	231611571	231611930	+	0	NA	Intergenic	Intergenic	18886	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
139840	chr2	230439621	230440150	+	0	NA	intron (NM_001080391, intron 2 of 28)	intron (NM_001080391, intron 2 of 28)	23129	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
183718	chr5	80998121	80999080	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-37693	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
60176	chr13	40213771	40214030	+	0	NA	intron (NR_033877, intron 1 of 5)	intron (NR_033877, intron 1 of 5)	6602	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
225594	chr9	36142701	36143400	+	0	NA	intron (NR_104637, intron 2 of 6)	intron (NR_104637, intron 2 of 6)	6265	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
172660	chr4	2667201	2667980	+	0	NA	intron (NM_001256668, intron 10 of 19)	L1M4|LINE|L1	42158	NM_001256668	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
158968	chr3	10246521	10246780	+	0	NA	Intergenic	AluY|SINE|Alu	-1809	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
104854	chr17	81845851	81846680	+	0	NA	intron (NM_000918, intron 7 of 10)	intron (NM_000918, intron 7 of 10)	-11215	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
15886	chr1	151534501	151535400	+	0	NA	intron (NM_020770, intron 15 of 20)	intron (NM_020770, intron 15 of 20)	-5359	NM_001126337	7286		NM_020127	ENSG00000143367	TUFT1	WHSF	tuftelin 1	protein-coding
212427	chr7	128321951	128322480	+	0	NA	intron (NM_018077, intron 13 of 18)	intron (NM_018077, intron 13 of 18)	21693	NM_001166135	55131		NM_018077	ENSG00000106344	RBM28	ANES|NOP4	RNA binding motif protein 28	protein-coding
189028	chr5	169581621	169582380	+	0	NA	Intergenic	L2c|LINE|L2	-1773	NM_001329643	54908		NM_017785	ENSG00000040275	SPDL1	CCDC99	spindle apparatus coiled-coil protein 1	protein-coding
97639	chr17	44192601	44192930	+	0	NA	TTS (NM_001353174)	TTS (NM_001353174)	5562	NM_001353175	79089		NM_024107	ENSG00000168591	TMUB2	FP2653	transmembrane and ubiquitin like domain containing 2	protein-coding
164630	chr3	66408801	66409200	+	0	NA	intron (NM_001377344, intron 6 of 17)	GA-rich|Low_complexity|Low_complexity	-2842	NM_001377347	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
79949	chr16	1764971	1765330	+	0	NA	exon (NM_001040439, exon 19 of 31)	exon (NM_001040439, exon 19 of 31)	6559	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
47857	chr12	6628701	6628900	+	0	NA	intron (NM_020400, intron 1 of 1)	AluSp|SINE|Alu	2849	NM_001142961	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
31164	chr10	91006251	91007830	+	0	NA	Intergenic	Intergenic	-26126	NR_134319	105378430		NR_134319		LOC105378430	-	uncharacterized LOC105378430	ncRNA
77556	chr15	84784401	84784600	+	0	NA	exon (NM_014630, exon 4 of 11)	exon (NM_014630, exon 4 of 11)	-32856	NM_020778	57538		NM_020778	ENSG00000136383	ALPK3	CMH27|MAK|MIDORI	alpha kinase 3	protein-coding
73754	chr15	45414171	45414580	+	0	NA	intron (NM_001323640, intron 3 of 4)	L2a|LINE|L2	12039	NR_136648	79029		NM_024063	ENSG00000171763	AFG2B	DFNB119|NEDHLS|SPATA5L1	AFG2 AAA ATPase homolog B	protein-coding
237032	chrX	102835771	102835950	+	0	NA	intron (NR_146590, intron 3 of 6)	intron (NR_146590, intron 3 of 6)	66707	NR_146589	100287765		NR_038988		LINC00630	-	long intergenic non-protein coding RNA 630	ncRNA
134555	chr2	144099951	144100050	+	0	NA	intron (NR_164809, intron 5 of 11)	intron (NR_164809, intron 5 of 11)	137339	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
223848	chr9	61271	61880	+	0	NA	Intergenic	Intergenic	-11115	NR_121188	101929127		NR_121188	ENSG00000277631	PGM5P3-AS1	FAM233B	PGM5P3 antisense RNA 1	ncRNA
22394	chr1	219204701	219204980	+	0	NA	intron (NM_001350629, intron 4 of 5)	intron (NM_001350629, intron 4 of 5)	29871	NM_001300772	127018		NM_138794	ENSG00000143353	LYPLAL1	Q96AV0	lysophospholipase like 1	protein-coding
41479	chr11	66216251	66216750	+	0	NA	intron (NM_018026, intron 5 of 23)	intron (NM_018026, intron 5 of 23)	-40794	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
45471	chr11	118573101	118574030	+	0	NA	intron (NM_001142281, intron 1 of 8)	intron (NM_001142281, intron 1 of 8)	1156	NM_001655	372		NM_001655	ENSG00000095139	ARCN1	COPD|SRMMD|SSMG	archain 1	protein-coding
99021	chr17	48837501	48838630	+	0	NA	intron (NM_001261395, intron 1 of 11)	LTR2|LTR|ERV1	7030	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
109158	chr19	199921	200430	+	0	NA	non-coding (NR_028324, exon 3 of 3)	non-coding (NR_028324, exon 3 of 3)	2034	NR_028324	399844		NM_001004321		LINC01002	-	long intergenic non-protein coding RNA 1002	ncRNA
122495	chr19	49569901	49570730	+	0	NA	intron (NM_001270960, intron 1 of 8)	intron (NM_001270960, intron 1 of 8)	10241	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
61226	chr13	49635371	49636680	+	0	NA	Intergenic	Intergenic	7518	NM_138450	115761		NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP ribosylation factor like GTPase 11	protein-coding
161231	chr3	39192051	39192350	+	0	NA	intron (NM_194293, intron 1 of 1)	intron (NM_194293, intron 1 of 1)	395	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
186475	chr5	138032021	138034180	+	0	NA	promoter-TSS (NM_001101801)	promoter-TSS (NM_001101801)	13	NM_016603	51306		NM_016603	ENSG00000031003	FAM13B	ARHGAP49|C5orf5|FAM13B1|KHCHP|N61	family with sequence similarity 13 member B	protein-coding
105046	chr17	82063671	82063830	+	0	NA	intron (NM_022156, intron 3 of 13)	intron (NM_022156, intron 3 of 13)	2054	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
18701	chr1	167437921	167438730	+	0	NA	intron (NM_198053, intron 4 of 7)	MER115|DNA|hAT-Tip100	80204	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
220085	chr8	94212221	94212530	+	0	NA	intron (NM_001144663, intron 1 of 17)	AluJb|SINE|Alu	-3820	NM_004063	1015		NM_004063	ENSG00000079112	CDH17	CDH16|HPT-1|HPT1	cadherin 17	protein-coding
134632	chr2	144422201	144422800	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-89431	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
203704	chr7	1043371	1043530	+	0	NA	intron (NM_032350, intron 2 of 4)	MIR|SINE|MIR	-1096	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
179419	chr4	184269751	184270150	+	0	NA	Intergenic	L2a|LINE|L2	-52077	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
181326	chr5	40385571	40385730	+	0	NA	Intergenic	Intergenic	-294265	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
169842	chr3	177181551	177181850	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	14778	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
198884	chr6	109461821	109462530	+	0	NA	TTS (NM_014797)	TTS (NM_014797)	3793	NM_001286613	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
849	chr1	1604971	1605650	+	0	NA	intron (NR_147951, intron 2 of 2)	intron (NR_147951, intron 2 of 2)	-5175	NM_001242659	643988		NM_001242659	ENSG00000228594	FNDC10	C1orf233	fibronectin type III domain containing 10	protein-coding
73274	chr15	41850601	41850800	+	0	NA	intron (NM_016642, intron 66 of 67)	MIR3|SINE|MIR	11887	NM_001114633	100137049		NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2 group IVB	protein-coding
72960	chr15	40473721	40473980	+	0	NA	TTS (NM_130468)	TTS (NM_130468)	2866	NM_130468	113189		NM_130468	ENSG00000169105	CHST14	ATCS|D4ST1|EDSMC1|HNK1ST	carbohydrate sulfotransferase 14	protein-coding
155256	chr22	37986501	37986900	+	0	NA	intron (NM_001301130, intron 5 of 5)	intron (NM_001301130, intron 5 of 5)	-2094	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
192955	chr6	27827251	27828080	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	3573	NM_021968	8363		NM_021968	ENSG00000197238	H4C11	H4-16|H4/e|H4C1|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2iv|H4FE|HIST1H4J|TEBIVANED2|TEVANED2|dJ160A22.2	H4 clustered histone 11	protein-coding
197310	chr6	72621071	72621230	+	0	NA	promoter-TSS (NM_001160130)	promoter-TSS (NM_001160130)	-914	NM_001160132	56479		NM_019842	ENSG00000185760	KCNQ5	Kv7.5|MRD46	potassium voltage-gated channel subfamily Q member 5	protein-coding
222383	chr8	133770951	133771250	+	0	NA	Intergenic	Intergenic	6252	NR_125422	101927798		NR_125422	ENSG00000253165	LOC101927798	-	uncharacterized LOC101927798	ncRNA
28800	chr10	62182671	62182830	+	0	NA	Intergenic	MER6A|DNA|TcMar-Tigger	86094	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
67967	chr14	74878351	74878950	+	0	NA	Intergenic	Intergenic	-2505	NR_169190	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
29852	chr10	72351421	72352000	+	0	NA	intron (NR_157570, intron 1 of 8)	intron (NR_157570, intron 1 of 8)	3209	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
81598	chr16	10390371	10390530	+	0	NA	intron (NR_045815, intron 1 of 10)	L1M5|LINE|L1	4389	NM_001352120	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
72995	chr15	40601751	40602430	+	0	NA	intron (NM_144508, intron 1 of 25)	AluYk4|SINE|Alu	7841	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
229893	chr9	126516971	126518180	+	0	NA	Intergenic	Intergenic	-96353	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
87140	chr16	69134621	69134880	+	0	NA	intron (NM_032830, intron 2 of 16)	AluSz|SINE|Alu	2101	NM_032830	84916		NM_032830	ENSG00000141076	UTP4	CIRH1A|CIRHIN|NAIC|TEX292	UTP4 small subunit processome component	protein-coding
177617	chr4	121156771	121157530	+	0	NA	exon (NM_024873, exon 4 of 11)	exon (NM_024873, exon 4 of 11)	7171	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
192605	chr6	26024421	26024680	+	0	NA	Intergenic	L2a|LINE|L2	2733	NM_003544	8366		NM_003544	ENSG00000278705	H4C2	H4-16|H4/I|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4FI|HIST1H4B	H4 clustered histone 2	protein-coding
46004	chr11	121564251	121564550	+	0	NA	intron (NM_003105, intron 21 of 47)	intron (NM_003105, intron 21 of 47)	-82611	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
146985	chr20	53149451	53149550	+	0	NA	intron (NM_173485, intron 1 of 2)	intron (NM_173485, intron 1 of 2)	-35783	NM_001193421	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
16827	chr1	155635671	155635980	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	25607	NM_018116	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
5266	chr1	25039071	25039650	+	0	NA	Intergenic	Intergenic	15857	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
191814	chr6	14636051	14636530	+	0	NA	Intergenic	Intergenic	-350836	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
28461	chr10	49254351	49255200	+	0	NA	Intergenic	Intergenic	44118	NR_108038	100506769		NR_108038		C10orf71-AS1	-	C10orf71 antisense RNA 1	ncRNA
24230	chr1	236149251	236149350	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	6761	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
192861	chr6	27214451	27215080	+	0	NA	Intergenic	Intergenic	-32936	NM_005865	10279		NM_005865	ENSG00000112812	PRSS16	TSSP	serine protease 16	protein-coding
52089	chr12	54080801	54082020	+	0	NA	intron (NR_026658, intron 1 of 2)	intron (NR_026658, intron 1 of 2)	413	NR_026658	100240735		NR_026658	ENSG00000291180	LOC100240735	-	uncharacterized LOC100240735	ncRNA
54395	chr12	89942801	89943680	+	0	NA	Intergenic	L1ME4a|LINE|L1	-4453	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
177789	chr4	123257671	123258030	+	0	NA	intron (NM_001345856, intron 15 of 15)	intron (NM_001345856, intron 15 of 15)	-138945	NM_001258038	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
9135	chr1	45490601	45491930	+	0	NA	promoter-TSS (NM_001320800)	promoter-TSS (NM_001320800)	-102	NM_001320800	10420		NM_007170	ENSG00000070759	TESK2	-	testis associated actin remodelling kinase 2	protein-coding
95990	chr17	39194901	39195100	+	0	NA	intron (NM_199247, intron 1 of 12)	intron (NM_199247, intron 1 of 12)	2669	NM_199248	782		NM_000723	ENSG00000067191	CACNB1	CAB1|CACNLB1|CCHLB1	calcium voltage-gated channel auxiliary subunit beta 1	protein-coding
12117	chr1	100046071	100046300	+	0	NA	intron (NM_033055, intron 1 of 11)	L1M2|LINE|L1	8090	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
41600	chr11	66371221	66372730	+	0	NA	promoter-TSS (NM_001532)	promoter-TSS (NM_001532)	-155	NR_125343	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
167387	chr3	128863601	128863800	+	0	NA	intron (NR_034179, intron 4 of 4)	intron (NR_034179, intron 4 of 4)	7841	NR_034179	653712		NR_034179		IFT122P3	-	IFT122 pseudogene 3	pseudo
800	chr1	1548701	1549050	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	-8251	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
203603	chr7	938201	938600	+	0	NA	intron (NM_001284308, intron 1 of 10)	AluJo|SINE|Alu	7416	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
105373	chr17	82696351	82696650	+	0	NA	intron (NM_006822, intron 1 of 5)	intron (NM_006822, intron 1 of 5)	2198	NM_006822	10966		NM_006822	ENSG00000141542	RAB40B	RAR|SEC4L	RAB40B, member RAS oncogene family	protein-coding
6178	chr1	27434571	27434930	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	42128	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
96171	chr17	39711471	39711830	+	0	NA	intron (NM_001382797, intron 7 of 25)	MIR|SINE|MIR	11586	NM_004448	2064		NM_004448	ENSG00000141736	ERBB2	CD340|HER-2|HER-2/neu|HER2|MLN 19|MLN-19|NEU|NGL|TKR1|VSCN2|c-ERB-2|c-ERB2|p185(erbB2)	erb-b2 receptor tyrosine kinase 2	protein-coding
19575	chr1	179228321	179228590	+	0	NA	intron (NM_007314, intron 1 of 11)	intron (NM_007314, intron 1 of 11)	1222	NM_001168238	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
165697	chr3	102018601	102018800	+	0	NA	Intergenic	MER57A1|LTR|ERV1	77841	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
54360	chr12	89705571	89705730	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	3188	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
190731	chr6	336651	337230	+	0	NA	intron (NR_104474, intron 3 of 5)	intron (NR_104474, intron 3 of 5)	44883	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
99856	chr17	55601871	55602130	+	0	NA	Intergenic	Intergenic	120864	NM_018286	55273		NM_018286	ENSG00000166292	TMEM100	-	transmembrane protein 100	protein-coding
95965	chr17	39102321	39102780	+	0	NA	intron (NM_020405, intron 7 of 13)	L1ME4b|LINE|L1	45531	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
96878	chr17	42096221	42096480	+	0	NA	intron (NM_001378270, intron 1 of 8)	MER115|DNA|hAT-Tip100	2123	NM_001378270	201181		NM_001013624	ENSG00000187595	ZNF385C	-	zinc finger protein 385C	protein-coding
203953	chr7	1554571	1554830	+	0	NA	intron (NM_001097620, intron 2 of 8)	intron (NM_001097620, intron 2 of 8)	1505	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
70389	chr14	101947641	101949250	+	0	NA	Intergenic	CpG	-16128	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
119270	chr19	39529871	39530030	+	0	NA	Intergenic	AluSg4|SINE|Alu	2902	NM_152361	126272		NM_152361	ENSG00000176401	EID2B	EID-2B|EID-3	EP300 interacting inhibitor of differentiation 2B	protein-coding
80104	chr16	2018401	2018600	+	0	NA	Intergenic	AluY|SINE|Alu	-1285	NM_001099456	283869		NM_001099456	ENSG00000183971	NPW	L8|L8C|PPL8|PPNPW	neuropeptide W	protein-coding
122213	chr19	48968221	48968750	+	0	NA	non-coding (NR_027763, exon 15 of 15)	non-coding (NR_027763, exon 15 of 15)	3176	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
235077	chrX	40173851	40174600	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	3052	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
105079	chr17	82102071	82102430	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-4014	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
26137	chr10	13790371	13790780	+	0	NA	intron (NM_018027, intron 5 of 24)	intron (NM_018027, intron 5 of 24)	-83008	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
227187	chr9	87937371	87937530	+	0	NA	intron (NR_149022, intron 1 of 3)	intron (NR_149022, intron 1 of 3)	1810	NR_149022	497256		NR_149022		LOC497256	-	uncharacterized LOC497256	ncRNA
99391	chr17	49988651	49988750	+	0	NA	Intergenic	AluJb|SINE|Alu	6524	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
122982	chr19	50801251	50801700	+	0	NA	TTS (NR_003069)	TTS (NR_003069)	946	NR_003069	692204		NR_003069	ENSG00000220988	SNORD88C	HBII-180C	small nucleolar RNA, C/D box 88C	snoRNA
108981	chr18	79681571	79682300	+	0	NA	intron (NM_001202504, intron 1 of 12)	intron (NM_001202504, intron 1 of 12)	505	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
22024	chr1	210292371	210292780	+	0	NA	Intergenic	CpG	-35677	NM_001170564	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
39292	chr11	58573101	58574280	+	0	NA	intron (NM_001143995, intron 1 of 8)	intron (NM_001143995, intron 1 of 8)	2166	NM_004811	9404		NM_004811	ENSG00000110031	LPXN	LDPL	leupaxin	protein-coding
217906	chr8	37895851	37896280	+	0	NA	intron (NM_025151, intron 1 of 4)	AluSx1|SINE|Alu	3432	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
116740	chr19	18469401	18471100	+	0	NA	intron (NM_006532, intron 2 of 11)	intron (NM_006532, intron 2 of 11)	-32117	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
150324	chr21	42051901	42052300	+	0	NA	Intergenic	Intergenic	-10777	NM_001199527	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
119543	chr19	40591851	40592550	+	0	NA	promoter-TSS (NM_003573)	promoter-TSS (NM_003573)	-966	NM_003573	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
124517	chr2	48671	48830	+	0	NA	Intergenic	L1PA10|LINE|L1	-2245	NM_001077710	642273		NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
55904	chr12	109729421	109729930	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	15850	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
167014	chr3	126113821	126114100	+	0	NA	intron (NR_072979, intron 16 of 20)	MIR|SINE|MIR	10320	NR_046602	100874204		NR_046602	ENSG00000250012	ALDH1L1-AS1	SLC41A3-AS1	ALDH1L1 antisense RNA 1	ncRNA
117150	chr19	19319451	19321880	+	0	NA	promoter-TSS (NM_015329)	promoter-TSS (NM_015329)	-156	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
111578	chr19	4066701	4068900	+	0	NA	promoter-TSS (NM_015898)	promoter-TSS (NM_015898)	-901	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
101911	chr17	74452121	74452980	+	0	NA	TTS (NM_001366261)	TTS (NM_001366261)	-13823	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
217656	chr8	30082801	30085250	+	0	NA	promoter-TSS (NM_001284239)	promoter-TSS (NM_001284239)	-817	NM_001284239	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
1352	chr1	2495271	2495700	+	0	NA	intron (NM_001303013, intron 12 of 21)	intron (NM_001303013, intron 12 of 21)	19170	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
27867	chr10	41850751	41850850	+	0	NA	Intergenic	Intergenic	517245	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
15201	chr1	149250151	149250330	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-49094	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
162183	chr3	46996321	46996580	+	0	NA	exon (NM_015175, exon 16 of 54)	exon (NM_015175, exon 16 of 54)	8460	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
34504	chr10	132560001	132560400	+	0	NA	intron (NM_005539, intron 1 of 15)	L1M4|LINE|L1	22413	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
11209	chr1	88859021	88859480	+	0	NA	intron (NM_001514, intron 5 of 6)	intron (NM_001514, intron 5 of 6)	32317	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
102964	chr17	76708471	76708630	+	0	NA	intron (NM_001008528, intron 1 of 3)	intron (NM_001008528, intron 1 of 3)	1047	NR_130926	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
69952	chr14	99681271	99681630	+	0	NA	TTS (NM_001127258)	TTS (NM_001127258)	-2848	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
222089	chr8	130420101	130420300	+	0	NA	intron (NM_001362924, intron 1 of 30)	L1MB5|LINE|L1	23460	NM_001362924	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
171265	chr3	195868171	195868550	+	0	NA	exon (NM_001010938, exon 13 of 15)	exon (NM_001010938, exon 13 of 15)	-7956	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
124491	chr19	58566401	58567080	+	0	NA	intron (NM_198055, intron 5 of 5)	FLAM_A|SINE|Alu	6595	NM_001267033	7593		NM_003422	ENSG00000099326	MZF1	MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6	myeloid zinc finger 1	protein-coding
39561	chr11	61127471	61127800	+	0	NA	3' UTR (NM_014207, exon 11 of 11)	3' UTR (NM_014207, exon 11 of 11)	25146	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
160700	chr3	32390751	32392200	+	0	NA	promoter-TSS (NM_181472)	promoter-TSS (NM_181472)	-378	NM_181472	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
62735	chr13	106532921	106533400	+	0	NA	intron (NM_004093, intron 1 of 4)	intron (NM_004093, intron 1 of 4)	2502	NM_001372057	1948		NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5|ephrin-B2	ephrin B2	protein-coding
61703	chr13	74070021	74071150	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	63344	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
190959	chr6	2935601	2936080	+	0	NA	Intergenic	LTR12C|LTR|ERV1	26290	NM_001271825	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
48110	chr12	7806901	7807200	+	0	NA	Intergenic	Intergenic	17648	NM_001297698	79923		NM_024865	ENSG00000111704	NANOG	-	Nanog homeobox	protein-coding
93885	chr17	21128471	21128630	+	0	NA	intron (NM_015510, intron 1 of 6)	AluY|SINE|Alu	1622	NM_015510	25979		NM_015510	ENSG00000109016	DHRS7B	CGI-93|SDR32C1	dehydrogenase/reductase 7B	protein-coding
59536	chr13	27257621	27258130	+	0	NA	Intergenic	AluSz|SINE|Alu	2474	NR_002575	619499		NR_002575	ENSG00000207051	SNORA27	ACA27	small nucleolar RNA, H/ACA box 27	snoRNA
205972	chr7	26170021	26170280	+	0	NA	intron (NM_004289, intron 1 of 3)	MIR3|SINE|MIR	17952	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
3369	chr1	15619171	15619530	+	0	NA	intron (NM_032341, intron 1 of 9)	AluSz|SINE|Alu	1892	NM_032341	84301		NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
118662	chr19	37372321	37372680	+	0	NA	intron (NM_032453, intron 1 of 4)	AluSz6|SINE|Alu	1401	NM_032453	84503		NM_032453	ENSG00000189164	ZNF527	-	zinc finger protein 527	protein-coding
461	chr1	1141221	1142030	+	0	NA	intron (NR_038869, intron 2 of 2)	intron (NR_038869, intron 2 of 2)	4608	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
135274	chr2	159807551	159807730	+	0	NA	intron (NM_001198759, intron 33 of 38)	intron (NM_001198759, intron 33 of 38)	-9385	NM_001198763	9936		NM_014880	ENSG00000241399	CD302	BIMLEC|CLEC13A|DCL-1|DCL1	CD302 molecule	protein-coding
174800	chr4	48105851	48106150	+	0	NA	intron (NM_003328, intron 5 of 14)	intron (NM_003328, intron 5 of 14)	28250	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
83832	chr16	28860971	28861130	+	0	NA	intron (NM_001308293, intron 1 of 10)	AluSz|SINE|Alu	-2707	NM_001145797	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
82352	chr16	15962601	15963100	+	0	NA	intron (NM_004996, intron 1 of 30)	THE1C-int|LTR|ERVL-MaLR	13234	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
190609	chr5	181175651	181176030	+	0	NA	Intergenic	AluSq2|SINE|Alu	16068	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
124760	chr2	6960601	6960800	+	0	NA	intron (NM_001349186, intron 2 of 7)	intron (NM_001349186, intron 2 of 7)	27616	NR_146069	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
232262	chr9	134412301	134412700	+	0	NA	intron (NM_001291921, intron 3 of 8)	intron (NM_001291921, intron 3 of 8)	5940	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
132551	chr2	106192671	106193200	+	0	NA	intron (NR_165308, intron 1 of 14)	intron (NR_165308, intron 1 of 14)	1366	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
175094	chr4	54144151	54144450	+	0	NA	Intergenic	Intergenic	44137	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
103352	chr17	78107551	78107980	+	0	NA	3' UTR (NM_001127198, exon 20 of 20)	3' UTR (NM_001127198, exon 20 of 20)	20990	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
68900	chr14	91346971	91347580	+	0	NA	intron (NM_001080414, intron 4 of 29)	Tigger15a|DNA|TcMar-Tigger	70545	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
5788	chr1	26539701	26540050	+	0	NA	intron (NM_002953, intron 2 of 21)	intron (NM_002953, intron 2 of 21)	-3237	NM_001330441	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
232258	chr9	134408501	134409550	+	0	NA	exon (NM_002957, exon 4 of 10)	exon (NM_002957, exon 4 of 10)	2465	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
39826	chr11	62054501	62054780	+	0	NA	Intergenic	HERVK3-int|LTR|ERVK	-69371	NM_020238	3619		NM_020238	ENSG00000149503	INCENP	-	inner centromere protein	protein-coding
64208	chr14	23052201	23052950	+	0	NA	exon (NM_022478, exon 8 of 14)	exon (NM_022478, exon 8 of 14)	4963	NM_144985	64403		NM_022478	ENSG00000139880	CDH24	CDH11L	cadherin 24	protein-coding
34137	chr10	128046101	128046300	+	0	NA	intron (NM_001323354, intron 2 of 19)	intron (NM_001323354, intron 2 of 19)	-1412	NM_130435	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
153506	chr22	26494671	26494830	+	0	NA	TTS (NM_001013694)	TTS (NM_001013694)	10873	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
175418	chr4	70984321	70985100	+	0	NA	3' UTR (NM_001244766, exon 7 of 7)	3' UTR (NM_001244766, exon 7 of 7)	-8939	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
10413	chr1	65264301	65264850	+	0	NA	promoter-TSS (NM_001256865)	promoter-TSS (NM_001256865)	-119	NM_001256865	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
202771	chr6	159059221	159059880	+	0	NA	Intergenic	Intergenic	-14398	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
228772	chr9	110257901	110258300	+	0	NA	Intergenic	Intergenic	-1593	NM_001244938	7295		NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1|TXN1|Trx80	thioredoxin	protein-coding
103368	chr17	78125251	78125650	+	0	NA	intron (NM_001375353, intron 5 of 19)	intron (NM_001375353, intron 5 of 19)	3305	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
68131	chr14	75523601	75524750	+	0	NA	intron (NM_006399, intron 1 of 2)	intron (NM_006399, intron 1 of 2)	1706	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
114176	chr19	11380701	11382190	+	0	NA	intron (NM_000121, intron 4 of 7)	CpG-13730	2869	NM_000121	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
140934	chr2	237730451	237730750	+	0	NA	intron (NM_001137550, intron 8 of 23)	intron (NM_001137550, intron 8 of 23)	38395	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
111455	chr19	3852471	3853050	+	0	NA	intron (NM_001145640, intron 1 of 1)	intron (NM_001145640, intron 1 of 1)	16278	NM_001145640	23217		NM_015174	ENSG00000105278	ZFR2	KIAA1086	zinc finger RNA binding protein 2	protein-coding
118658	chr19	37329771	37329930	+	0	NA	TTS (NR_148546)	TTS (NR_148546)	-4774	NR_138129	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
76750	chr15	76347251	76347350	+	0	NA	TTS (NM_001353012)	TTS (NM_001353012)	10527	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
187228	chr5	141213701	141214000	+	0	NA	promoter-TSS (NM_018933)	promoter-TSS (NM_018933)	-69	NM_018933	56123		NM_018933	ENSG00000187372	PCDHB13	PCDH-BETA13	protocadherin beta 13	protein-coding
177395	chr4	112233601	112234500	+	0	NA	intron (NM_018569, intron 1 of 9)	AluY|SINE|Alu	2263	NM_001128426	55435		NM_018569	ENSG00000138660	AP1AR	2C18|C4orf16|GBAR|PRO0971|gamma-BAR	adaptor related protein complex 1 associated regulatory protein	protein-coding
214670	chr7	150947801	150948000	+	0	NA	intron (NM_172057, intron 7 of 10)	intron (NM_172057, intron 7 of 10)	7904	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
3132	chr1	12439801	12440000	+	0	NA	intron (NM_018156, intron 64 of 68)	MIRb|SINE|MIR	-67346	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
171403	chr3	196199871	196200030	+	0	NA	intron (NR_135617, intron 5 of 8)	AluSx1|SINE|Alu	11450	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
68838	chr14	91283151	91283730	+	0	NA	exon (NM_001080414, exon 26 of 30)	exon (NM_001080414, exon 26 of 30)	-29560	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
175685	chr4	77044521	77045180	+	0	NA	Intergenic	Intergenic	30060	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
115212	chr19	14486171	14487350	+	0	NA	intron (NM_202470, intron 1 of 6)	AluSx1|SINE|Alu	9367	NM_202470	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
69605	chr14	97446071	97446330	+	0	NA	Intergenic	(AATGA)n|Simple_repeat|Simple_repeat	-12616	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
155292	chr22	38112101	38112980	+	0	NA	exon (NM_001349868, exon 15 of 16)	exon (NM_001349868, exon 15 of 16)	-1856	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
226034	chr9	42636151	42636330	+	0	NA	Intergenic	TAR1|Satellite|telo	-49706	NR_121564	101927827		NR_121564	ENSG00000229311	LOC101927827	-	uncharacterized LOC101927827	ncRNA
118908	chr19	38721521	38721980	+	0	NA	intron (NM_004924, intron 12 of 20)	intron (NM_004924, intron 12 of 20)	22724	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
226301	chr9	68583251	68583630	+	0	NA	Intergenic	AluSq|SINE|Alu	-36838	NR_109769	101927015		NR_109769		LINC01506	-	long intergenic non-protein coding RNA 1506	ncRNA
216354	chr8	17246121	17247650	+	0	NA	promoter-TSS (NM_001322095)	promoter-TSS (NM_001322095)	-7	NM_001145152	137492		NM_152415	ENSG00000155975	VPS37A	HCRP1|PQBP2|SPG53	VPS37A subunit of ESCRT-I	protein-coding
11880	chr1	93149671	93150230	+	0	NA	non-coding (NR_030761, exon 5 of 5)	non-coding (NR_030761, exon 5 of 5)	30463	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
58224	chr12	128388651	128389150	+	0	NA	intron (NM_001136103, intron 1 of 8)	intron (NM_001136103, intron 1 of 8)	94808	NR_037406	100500817		NR_037406	ENSG00000265635	MIR3612	-	microRNA 3612	ncRNA
115983	chr19	17078121	17078380	+	0	NA	intron (NM_004145, intron 1 of 39)	intron (NM_004145, intron 1 of 39)	2473	NM_004145	4650		NM_004145	ENSG00000099331	MYO9B	CELIAC4|MYR5	myosin IXB	protein-coding
208027	chr7	55689301	55689500	+	0	NA	promoter-TSS (NR_027342)	promoter-TSS (NR_027342)	60	NR_027339	360132		NM_182827	ENSG00000291029	FKBP9P1	FKBP9L	FKBP prolyl isomerase 9 pseudogene 1	pseudo
138029	chr2	201284451	201285150	+	0	NA	intron (NR_111983, intron 7 of 8)	intron (NR_111983, intron 7 of 8)	24264	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
90764	chr17	2057751	2057930	+	0	NA	exon (NM_001098202, exon 2 of 2)	exon (NM_001098202, exon 2 of 2)	1530	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
176086	chr4	82896201	82896480	+	0	NA	promoter-TSS (NR_132759)	promoter-TSS (NR_132759)	-412	NR_132759	106633808		NR_132759		SNORD143	SNORA96|SNORD171|ZL5	small nucleolar RNA, C/D box 143	snoRNA
30645	chr10	80463251	80464180	+	0	NA	intron (NM_001351268, intron 2 of 9)	L1MC4a|LINE|L1	4430	NM_001351270	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
80537	chr16	2774001	2774450	+	0	NA	intron (NM_207013, intron 3 of 4)	AluSx|SINE|Alu	3055	NM_207013	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
125781	chr2	23689201	23689600	+	0	NA	intron (NM_052920, intron 6 of 13)	intron (NM_052920, intron 6 of 13)	237723	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
231347	chr9	130315071	130315230	+	0	NA	intron (NM_001291815, intron 15 of 97)	intron (NM_001291815, intron 15 of 97)	49390	NM_001291815	256158		NM_144655	ENSG00000148357	HMCN2	-	hemicentin 2	protein-coding
196130	chr6	42404421	42405480	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	47101	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
211271	chr7	102712321	102712600	+	0	NA	intron (NR_146066, intron 1 of 11)	AluSq4|SINE|Alu	36234	NR_146066	100133005		NR_146066		RASA4DP	-	RAS p21 protein activator 4D, pseudogene	pseudo
165315	chr3	87298021	87298350	+	0	NA	Intergenic	Intergenic	-21601	NM_000306	5449		NM_000306	ENSG00000064835	POU1F1	CPHD1|GHF-1|PIT1|POU1F1a|Pit-1	POU class 1 homeobox 1	protein-coding
101349	chr17	67083671	67083830	+	0	NA	intron (NM_001330447, intron 32 of 32)	intron (NM_001330447, intron 32 of 32)	39196	NM_000727	786		NM_000727	ENSG00000108878	CACNG1	CACNLG	calcium voltage-gated channel auxiliary subunit gamma 1	protein-coding
26504	chr10	18650571	18650730	+	0	NA	intron (NM_001351116, intron 2 of 11)	MIRb|SINE|MIR	937	NM_182543	221078		NM_182543	ENSG00000241058	NSUN6	4933414E04Rik|ARL5B-AS1|MRT82|NOPD1	NOP2/Sun RNA methyltransferase 6	protein-coding
126237	chr2	27066771	27066930	+	0	NA	intron (NM_021831, intron 11 of 14)	AluSg|SINE|Alu	4804	NM_001134693	100128731		NM_001134693	ENSG00000228474	OST4	-	oligosaccharyltransferase complex subunit 4, non-catalytic	protein-coding
231223	chr9	129965101	129965650	+	0	NA	intron (NM_001363755, intron 4 of 15)	intron (NM_001363755, intron 4 of 15)	77814	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
109934	chr19	1316621	1317230	+	0	NA	Intergenic	Intergenic	31052	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
98747	chr17	48053101	48053500	+	0	NA	intron (NM_001330261, intron 2 of 5)	intron (NM_001330261, intron 2 of 5)	4941	NM_003204	4779		NM_003204	ENSG00000082641	NFE2L1	LCR-F1|NRF-1|NRF1|TCF11	NFE2 like bZIP transcription factor 1	protein-coding
44440	chr11	104784671	104784830	+	0	NA	Intergenic	Intergenic	113920	NR_034065	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
167498	chr3	129181051	129181650	+	0	NA	intron (NM_001127196, intron 1 of 4)	intron (NM_001127196, intron 1 of 4)	2546	NM_001127196	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
158420	chr22	50542421	50542780	+	0	NA	Intergenic	Intergenic	-3299	NM_138433	113730		NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
18921	chr1	168438371	168438530	+	0	NA	Intergenic	Intergenic	-15794	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
108224	chr18	63188071	63188230	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	131619	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
27155	chr10	28366801	28367200	+	0	NA	Intergenic	Intergenic	-63936	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
65220	chr14	49791971	49792330	+	0	NA	intron (NM_001301732, intron 25 of 31)	AluJb|SINE|Alu	23997	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
148421	chr20	63958851	63959650	+	0	NA	3' UTR (NM_020713, exon 17 of 17)	3' UTR (NM_020713, exon 17 of 17)	-2834	NM_001353477	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
239232	chrY	12947401	12947600	+	0	NA	Intergenic	AluJb|SINE|Alu	41795	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
238922	chrX	154735451	154735700	+	0	NA	intron (NR_104114, intron 1 of 8)	L2|LINE|L2	15502	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
169800	chr3	176444621	176444700	+	0	NA	Intergenic	AluYc|SINE|Alu	-70443	NR_107017	102465858		NR_107017	ENSG00000283333	MIR7977	hsa-mir-7977	microRNA 7977	ncRNA
49844	chr12	32677101	32677300	+	0	NA	Intergenic	AluJb|SINE|Alu	-2000	NM_001278463	10059		NM_005690	ENSG00000087470	DNM1L	DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5	dynamin 1 like	protein-coding
109078	chr18	79930101	79930300	+	0	NA	intron (NM_001146345, intron 3 of 4)	L1M4b|LINE|L1	21453	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
110141	chr19	1610421	1611480	+	0	NA	3' UTR (NM_001351779, exon 19 of 19)	3' UTR (NM_001351779, exon 19 of 19)	-5488	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
217692	chr8	30121701	30122230	+	0	NA	intron (NM_001128208, intron 3 of 3)	AluSz|SINE|Alu	22700	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
57803	chr12	123119821	123120180	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	-14484	NM_001384660	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
209910	chr7	92142821	92143230	+	0	NA	intron (NM_001384934, intron 3 of 3)	LTR12C|LTR|ERV1	-8280	NM_001146152	1595		NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
75346	chr15	65422571	65423300	+	0	NA	promoter-TSS (NM_020962)	promoter-TSS (NM_020962)	12	NM_020962	57722		NM_020962	ENSG00000103742	IGDCC4	DDM36|NOPE	immunoglobulin superfamily DCC subclass member 4	protein-coding
174842	chr4	48483951	48485000	+	0	NA	intron (NM_152679, intron 1 of 2)	intron (NM_152679, intron 1 of 2)	1132	NM_152679	201780		NM_152679	ENSG00000145248	SLC10A4	P4	solute carrier family 10 member 4	protein-coding
220793	chr8	102651301	102652580	+	0	NA	exon (NM_005655, exon 3 of 4)	exon (NM_005655, exon 3 of 4)	2024	NR_103759	7071		NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	KLF transcription factor 10	protein-coding
74379	chr15	58866171	58866930	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	67129	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
164419	chr3	58587951	58588250	+	0	NA	intron (NM_001282714, intron 2 of 4)	MIRb|SINE|MIR	-1086	NM_001282713	11170		NM_007177	ENSG00000168309	FAM107A	DRR1|TU3A	family with sequence similarity 107 member A	protein-coding
225115	chr9	33460301	33460500	+	0	NA	TTS (NM_022917)	TTS (NM_022917)	7535	NR_106910	102465512		NR_106910	ENSG00000275651	MIR6851	hsa-mir-6851	microRNA 6851	ncRNA
23648	chr1	230917301	230917930	+	0	NA	intron (NM_024525, intron 17 of 22)	intron (NM_024525, intron 17 of 22)	42769	NR_110681	101927604		NR_110681		LOC101927604	-	uncharacterized LOC101927604	ncRNA
32546	chr10	103250621	103251550	+	0	NA	Intergenic	Intergenic	5198	NM_001143909	729020		NM_001143909	ENSG00000235376	RPEL1	-	ribulose-5-phosphate-3-epimerase like 1	protein-coding
82221	chr16	15022021	15022780	+	0	NA	intron (NM_001324019, intron 12 of 22)	intron (NM_001324019, intron 12 of 22)	-12003	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
101043	chr17	64799351	64799900	+	0	NA	intron (NR_024386, intron 6 of 10)	intron (NR_024386, intron 6 of 10)	-17626	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
182148	chr5	56328921	56329880	+	0	NA	Intergenic	LTR49|LTR|ERV1	-96070	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
238044	chrX	135384071	135384600	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-12094	NR_104652	100506790		NR_104652	ENSG00000290806	LOC100506790	-	uncharacterized LOC100506790	ncRNA
167466	chr3	129111301	129111500	+	0	NA	intron (NM_001204890, intron 11 of 12)	AluSz|SINE|Alu	10404	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
31142	chr10	89771701	89771900	+	0	NA	intron (NR_168375, intron 29 of 30)	MER76|LTR|ERVL	-57693	NR_038382	643529		NR_038382	ENSG00000232229	LINC00865	-	long intergenic non-protein coding RNA 865	ncRNA
236728	chrX	78109201	78109800	+	0	NA	intron (NM_000291, intron 1 of 10)	intron (NM_000291, intron 1 of 10)	5252	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
160742	chr3	32484671	32485030	+	0	NA	intron (NM_017801, intron 3 of 3)	MIR3|SINE|MIR	18002	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
36230	chr11	3640601	3640800	+	0	NA	intron (NM_001297668, intron 1 of 3)	AluSx|SINE|Alu	1292	NM_001297668	116969		NM_053017	ENSG00000167311	ART5	ARTC5	ADP-ribosyltransferase 5	protein-coding
215382	chr7	157431001	157431200	+	0	NA	Intergenic	Intergenic	-35131	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
81954	chr16	11849271	11849430	+	0	NA	intron (NM_015659, intron 2 of 8)	AluJb|SINE|Alu	2192	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
77066	chr15	78884071	78884800	+	0	NA	intron (NM_001265604, intron 3 of 11)	AluSp|SINE|Alu	11446	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
58712	chr12	132571151	132571750	+	0	NA	exon (NM_001142641, exon 9 of 17)	exon (NM_001142641, exon 9 of 17)	-10547	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
78182	chr15	90547271	90547900	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	17662	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
66467	chr14	61560301	61560500	+	0	NA	intron (NR_110417, intron 3 of 3)	intron (NR_110417, intron 3 of 3)	9794	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
28938	chr10	63208051	63208400	+	0	NA	exon (NM_001318154, exon 10 of 26)	exon (NM_001318154, exon 10 of 26)	60998	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
116702	chr19	18436411	18439700	+	0	NA	promoter-TSS (NR_045573)	promoter-TSS (NR_045573)	78	NM_001170938	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
140078	chr2	231443501	231444100	+	0	NA	Intergenic	AluSg|SINE|Alu	12136	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
207820	chr7	50317191	50319100	+	0	NA	promoter-TSS (NM_001291842)	promoter-TSS (NM_001291842)	-903	NM_001220768	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
199516	chr6	118709001	118709700	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	725	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
103396	chr17	78170671	78171180	+	0	NA	exon (NM_001363778, exon 2 of 3)	exon (NM_001363778, exon 2 of 3)	2344	NM_004710	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
155127	chr22	37637501	37637780	+	0	NA	Intergenic	Intergenic	-2029	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
106425	chr18	13558151	13558360	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-52859	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
86218	chr16	58098501	58098700	+	0	NA	Intergenic	Intergenic	30781	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
199831	chr6	127743251	127743550	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	111788	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
220694	chr8	101501201	101501630	+	0	NA	intron (NM_001330593, intron 1 of 15)	intron (NM_001330593, intron 1 of 15)	8976	NM_001330593	79977		NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|PPCD4|TFCP2L3	grainyhead like transcription factor 2	protein-coding
123523	chr19	54240871	54241030	+	0	NA	exon (NM_024318, exon 5 of 8).4	exon (NM_024318, exon 5 of 8).4	1840	NM_024318	79168		NM_024318	ENSG00000244482	LILRA6	CD85b|ILT-8|ILT5|ILT8|LILRB3|LILRB6	leukocyte immunoglobulin like receptor A6	protein-coding
138323	chr2	203765671	203765830	+	0	NA	Intergenic	MIRb|SINE|MIR	59111	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
50705	chr12	48928001	48928200	+	0	NA	Intergenic	AluJb|SINE|Alu	-2553	NM_001143782	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
166101	chr3	110623571	110623730	+	0	NA	Intergenic	MER57E1|LTR|ERV1	446309	NR_045114	100506555		NR_045114		NECTIN3-AS1	PVRL3-AS1	NECTIN3 antisense RNA 1	ncRNA
212647	chr7	129500821	129501080	+	0	NA	Intergenic	L2|LINE|L2	-1581	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
183706	chr5	80974001	80974200	+	0	NA	intron (NM_006909, intron 1 of 26)	HERVL40-int|LTR|ERVL	-13193	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
28289	chr10	46077801	46078050	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-31570	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
42524	chr11	70689551	70689650	+	0	NA	intron (NM_001379226, intron 5 of 15)	HAL1ME|LINE|L1	-27759	NM_133266	22941		NM_012309	ENSG00000162105	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
201324	chr6	144410571	144410730	+	0	NA	intron (NM_007124, intron 2 of 73)	L1PB1|LINE|L1	4995	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
153887	chr22	30286421	30287170	+	0	NA	intron (NM_001037666, intron 5 of 8)	intron (NM_001037666, intron 5 of 8)	2710	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
126010	chr2	25322721	25323980	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	5371	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
210991	chr7	102272001	102272630	+	0	NA	intron (NM_001913, intron 14 of 22)	intron (NM_001913, intron 14 of 22)	-12826	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
138247	chr2	203177271	203177630	+	0	NA	intron (NM_001378026, intron 42 of 55)	L1MB7|LINE|L1	-61568	NR_163981	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
118371	chr19	35714901	35715180	+	0	NA	exon (NM_014383, exon 3 of 7)	exon (NM_014383, exon 3 of 7)	-2963	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
226978	chr9	81710671	81710830	+	0	NA	intron (NR_109772, intron 1 of 3)	SVA_F|Retroposon|SVA	21037	NR_109772	101927502		NR_109772	ENSG00000233926	TLE1-DT	-	TLE1 divergent transcript	ncRNA
52979	chr12	57485401	57485900	+	0	NA	intron (NM_001319850, intron 1 of 20)	AluSz6|SINE|Alu	-2418	NM_004990	4141		NM_004990	ENSG00000166986	MARS1	CMT2U|ILFS2|ILLD|MARS|METRS|MRS|MTRNS|SPG70|TTD9	methionyl-tRNA synthetase 1	protein-coding
208249	chr7	65556121	65556650	+	0	NA	Intergenic	L2c|LINE|L2	-1320	NR_157838	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
22687	chr1	223840871	223841230	+	0	NA	intron (NM_001031685, intron 1 of 17)	AluSg7|SINE|Alu	4897	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
199337	chr6	113930751	113930850	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	26413	NR_027060	285759		NM_173673	ENSG00000175967	LINC02880	-	long intergenic non-protein coding RNA 2880	ncRNA
55724	chr12	108303121	108303380	+	0	NA	intron (NM_001142344, intron 1 of 2)	intron (NM_001142344, intron 1 of 2)	17412	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
169214	chr3	157085801	157086200	+	0	NA	intron (NR_034007, intron 3 of 3)	MLT1F2|LTR|ERVL-MaLR	-3881	NR_034008	100498859		NR_034008		LINC00881	LIPTER	long intergenic non-protein coding RNA 881	ncRNA
198943	chr6	110560551	110561530	+	0	NA	Intergenic	AluJo|SINE|Alu	-84427	NM_033125	85413		NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
226586	chr9	73093751	73094200	+	0	NA	Intergenic	Intergenic	-57890	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
89716	chr16	89413221	89414200	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-17208	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
130740	chr2	86790201	86791920	+	0	NA	promoter-TSS (NM_001768)	promoter-TSS (NM_001768)	-147	NM_001768	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
109162	chr19	266971	267590	+	0	NA	Intergenic	CpG	23859	NM_177543	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
160597	chr3	31227001	31227750	+	0	NA	Intergenic	Intergenic	-65588	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
12498	chr1	108045571	108045730	+	0	NA	Intergenic	Intergenic	-80470	NM_006113	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
144653	chr20	36066451	36066880	+	0	NA	Intergenic	Intergenic	-15705	NR_027451	647979		NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
124888	chr2	8392651	8392750	+	0	NA	Intergenic	Intergenic	-64281	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
214999	chr7	152341451	152341550	+	0	NA	intron (NM_170606, intron 2 of 58)	MLT1I|LTR|ERVL-MaLR	94503	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
143380	chr20	28512551	28512850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	89965	NR_132315	100289097		NR_132315	ENSG00000282826	FRG1CP	-	FSHD region gene 1 family member C, pseudogene	pseudo
153381	chr22	24550351	24550650	+	0	NA	intron (NM_001284251, intron 1 of 5)	intron (NM_001284251, intron 1 of 5)	4638	NM_001284257	83606		NM_031444	ENSG00000138867	GUCD1	C22orf13|LLN4	guanylyl cyclase domain containing 1	protein-coding
204775	chr7	5609601	5610230	+	0	NA	Intergenic	AluSx4|SINE|Alu	17099	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
179630	chr4	186149971	186150380	+	0	NA	intron (NM_001350178, intron 3 of 13)	intron (NM_001350178, intron 3 of 13)	5288	NM_015398	25854		NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
152228	chr22	20150221	20151000	+	0	NA	exon (NM_001365892, exon 1 of 9)	exon (NM_001365892, exon 1 of 9)	445	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
73311	chr15	41893651	41893900	+	0	NA	intron (NM_016642, intron 1 of 67)	intron (NM_016642, intron 1 of 67)	278	NM_016642	51332		NM_016642	ENSG00000137877	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin beta, non-erythrocytic 5	protein-coding
46835	chr11	132093971	132094550	+	0	NA	intron (NR_147852, intron 1 of 7)	intron (NR_147852, intron 1 of 7)	183442	NR_147853	50863		NM_016522	ENSG00000182667	NTM	CEPU-1|HNT|IGLON2|NTRI	neurotrimin	protein-coding
118877	chr19	38672051	38672730	+	0	NA	intron (NM_004924, intron 1 of 20)	AluSz|SINE|Alu	24741	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
11133	chr1	86703771	86706180	+	0	NA	promoter-TSS (NR_135837)	promoter-TSS (NR_135837)	399	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
191242	chr6	5865471	5865900	+	0	NA	Intergenic	Intergenic	138359	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
67245	chr14	68975651	68976250	+	0	NA	intron (NM_001130004, intron 1 of 21)	MIRc|SINE|MIR	3352	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
101376	chr17	67272571	67273000	+	0	NA	Intergenic	Intergenic	-27589	NM_001330447	9931		NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
93422	chr17	18427671	18427830	+	0	NA	intron (NR_146075, intron 1 of 6)	intron (NR_146075, intron 1 of 6)	889	NR_146075	339241		NR_146075		KRT17P2	-	keratin 17 pseudogene 2	pseudo
12105	chr1	100036821	100037100	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-1135	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
126169	chr2	26396651	26397230	+	0	NA	Intergenic	Intergenic	-4980	NM_145038	92749		NM_145038	ENSG00000157856	DRC1	C2orf39|CCDC164|CILD21|SPGF80	dynein regulatory complex subunit 1	protein-coding
144903	chr20	36943971	36945180	+	0	NA	intron (NM_001363733, intron 2 of 15)	intron (NM_001363733, intron 2 of 15)	7133	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
10849	chr1	77962301	77962750	+	0	NA	intron (NR_146539, intron 14 of 22)	intron (NR_146539, intron 14 of 22)	16547	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
144754	chr20	36603251	36603750	+	0	NA	intron (NM_001199535, intron 2 of 4)	AluSz6|SINE|Alu	-2279	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
129184	chr2	68179501	68180100	+	0	NA	3' UTR (NM_000945, exon 6 of 6)	3' UTR (NM_000945, exon 6 of 6)	21912	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
47190	chr12	806371	806530	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	53527	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
154012	chr22	30430951	30431480	+	0	NA	Intergenic	Intergenic	-1471	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
99143	chr17	49340901	49341350	+	0	NA	intron (NR_135579, intron 1 of 7)	AluSx1|SINE|Alu	-20040	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
114092	chr19	11113921	11114730	+	0	NA	TTS (NR_106946)	TTS (NR_106946)	851	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
158952	chr3	10191821	10192430	+	0	NA	intron (NM_001570, intron 2 of 12)	intron (NM_001570, intron 2 of 12)	27206	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
64186	chr14	22983261	22983830	+	0	NA	promoter-TSS (NM_032876)	promoter-TSS (NM_032876)	-994	NM_032876	84962		NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
41548	chr11	66295921	66296180	+	0	NA	3' UTR (NM_153266, exon 2 of 2)	3' UTR (NM_153266, exon 2 of 2)	4156	NM_153266	256472		NM_153266	ENSG00000179292	TMEM151A	DYT36|EKD3|TMEM151	transmembrane protein 151A	protein-coding
186558	chr5	138467001	138468100	+	0	NA	exon (NM_001964, exon 2 of 2)	exon (NM_001964, exon 2 of 2)	2071	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
140162	chr2	231616351	231617100	+	0	NA	Intergenic	Intergenic	23861	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
68720	chr14	90760501	90761000	+	0	NA	intron (NM_001010854, intron 3 of 19)	intron (NM_001010854, intron 3 of 19)	55667	NM_001320421	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
192486	chr6	24954271	24954630	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-18490	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
7240	chr1	32341471	32342230	+	0	NA	Intergenic	(CCTTCC)n|Simple_repeat|Simple_repeat	-5617	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
9674	chr1	52702901	52703880	+	0	NA	Intergenic	Intergenic	-5043	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
143234	chr20	24990151	24990480	+	0	NA	intron (NM_020531, intron 1 of 8)	intron (NM_020531, intron 1 of 8)	2436	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
95247	chr17	35428321	35428950	+	0	NA	intron (NM_001289009, intron 1 of 3)	intron (NM_001289009, intron 1 of 3)	3865	NM_018042	55106		NM_018042	ENSG00000172123	SLFN12	SLFN3	schlafen family member 12	protein-coding
103431	chr17	78256971	78257400	+	0	NA	Intergenic	Intergenic	8869	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
47165	chr12	776071	776300	+	0	NA	intron (NM_018979, intron 1 of 27)	AluJr|SINE|Alu	23262	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
114149	chr19	11335721	11336400	+	0	NA	intron (NM_004283, intron 2 of 4)	intron (NM_004283, intron 2 of 4)	3597	NM_004283	9545		NM_004283	ENSG00000105514	RAB3D	D2-2|GOV|RAB16|RAD3D	RAB3D, member RAS oncogene family	protein-coding
185323	chr5	126789221	126789480	+	0	NA	intron (NR_134488, intron 1 of 11)	L2|LINE|L2	12214	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
158602	chr3	4829751	4830150	+	0	NA	intron (NM_002222, intron 56 of 57)	intron (NM_002222, intron 56 of 57)	76551	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
3109	chr1	12229571	12231530	+	0	NA	intron (NM_018156, intron 1 of 68)	intron (NM_018156, intron 1 of 68)	520	NM_018156	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
151253	chr21	45308501	45309280	+	0	NA	Intergenic	Intergenic	20838	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
185247	chr5	123441551	123441650	+	0	NA	Intergenic	Intergenic	-17758	NM_001375408	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
134478	chr2	143255051	143255330	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	125771	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
146456	chr20	49698651	49698750	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	15178	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
61892	chr13	77315371	77315880	+	0	NA	intron (NM_015057, intron 1 of 82)	AluSx|SINE|Alu	11469	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
176534	chr4	98150371	98150730	+	0	NA	Intergenic	Intergenic	-7074	NM_174952	285555		NM_174952	ENSG00000163116	STPG2	C4orf37	sperm tail PG-rich repeat containing 2	protein-coding
238450	chrX	152872471	152872630	+	0	NA	Intergenic	Intergenic	41487	NM_015922	50814		NM_015922	ENSG00000147383	NSDHL	H105E3|SDR31E1|XAP104	NAD(P) dependent steroid dehydrogenase-like	protein-coding
23426	chr1	228401921	228402180	+	0	NA	intron (NM_145214, intron 2 of 5)	intron (NM_145214, intron 2 of 5)	4785	NM_145214	81559		NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
61923	chr13	77929051	77929150	+	0	NA	intron (NM_000115, intron 1 of 7)	intron (NM_000115, intron 1 of 7)	-9332	NM_001201397	1910		NM_000115	ENSG00000136160	EDNRB	ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A	endothelin receptor type B	protein-coding
74177	chr15	55405251	55405580	+	0	NA	intron (NR_037923, intron 8 of 15)	AluSz6|SINE|Alu	2944	NM_020739	9236		NM_004748	ENSG00000260916	CCPG1	CPR8	cell cycle progression 1	protein-coding
160411	chr3	28249001	28249200	+	0	NA	intron (NM_001331187, intron 1 of 3)	intron (NM_001331187, intron 1 of 3)	7481	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
208276	chr7	65870851	65871350	+	0	NA	Intergenic	Intergenic	-1974	NM_173517	154807		NM_173517	ENSG00000196715	VKORC1L1	-	vitamin K epoxide reductase complex subunit 1 like 1	protein-coding
13263	chr1	112718521	112719630	+	0	NA	non-coding (NR_169586, exon 1 of 6)	non-coding (NR_169586, exon 1 of 6)	170	NR_169586	284467		NM_182759	ENSG00000184599	TAFA3	FAM19A3|TAFA-3	TAFA chemokine like family member 3	protein-coding
55212	chr12	101794871	101795230	+	0	NA	intron (NM_024312, intron 2 of 20)	intron (NM_024312, intron 2 of 20)	35909	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
195509	chr6	37189701	37190480	+	0	NA	Intergenic	AluJo|SINE|Alu	19938	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
21992	chr1	209754951	209755050	+	0	NA	Intergenic	AluSz|SINE|Alu	-1053	NR_109871	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
219828	chr8	81718971	81719530	+	0	NA	intron (NR_033195, intron 1 of 6)	AluSx|SINE|Alu	2050	NM_024699	79752		NM_024699	ENSG00000104231	ZFAND1	-	zinc finger AN1-type containing 1	protein-coding
231841	chr9	132672121	132672800	+	0	NA	intron (NR_133925, intron 1 of 5)	intron (NR_133925, intron 1 of 5)	1996	NM_012204	9329		NM_012204	ENSG00000125484	GTF3C4	KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA	general transcription factor IIIC subunit 4	protein-coding
94798	chr17	31158671	31159750	+	0	NA	intron (NM_001042492, intron 3 of 57)	intron (NM_001042492, intron 3 of 57)	64233	NM_001042492	4763		NM_000267	ENSG00000196712	NF1	NFNS|VRNF|WSS	neurofibromin 1	protein-coding
21823	chr1	207329171	207329730	+	0	NA	intron (NM_001300904, intron 5 of 10)	L2c|LINE|L2	7772	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
63769	chr14	21253071	21253530	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluY|SINE|Alu	16142	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
63538	chr14	18583571	18583730	+	0	NA	Intergenic	MIRb|SINE|MIR	-17467	NM_001013354	440153		NM_001013354	ENSG00000257115	OR11H12	-	olfactory receptor family 11 subfamily H member 12	protein-coding
157148	chr22	42855201	42855550	+	0	NA	intron (NM_001142293, intron 1 of 14)	intron (NM_001142293, intron 1 of 14)	1898	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
96513	chr17	40331301	40331500	+	0	NA	intron (NM_001145302, intron 2 of 6)	intron (NM_001145302, intron 2 of 6)	-10766	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
39051	chr11	47915451	47915980	+	0	NA	Intergenic	LTR33|LTR|ERVL	-64844	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
185029	chr5	115586501	115586930	+	0	NA	intron (NM_001164469, intron 3 of 3)	intron (NM_001164469, intron 3 of 3)	-15440	NR_109874	101927100		NR_109874		TICAM2-AS1	-	TICAM2 antisense RNA 1	ncRNA
6846	chr1	31054301	31054700	+	0	NA	intron (NM_014676, intron 2 of 21)	intron (NM_014676, intron 2 of 21)	11217	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
213291	chr7	134988271	134988630	+	0	NA	TTS (NR_160299)	TTS (NR_160299)	1942	NM_001345851	340351		NM_178563	ENSG00000146856	AGBL3	CCP3	AGBL carboxypeptidase 3	protein-coding
156758	chr22	41838771	41839950	+	0	NA	intron (NR_103834, intron 1 of 21)	intron (NR_103834, intron 1 of 21)	-4695	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
139802	chr2	230323001	230324250	+	0	NA	Intergenic	Intergenic	-3546	NM_001308163	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
76270	chr15	74088401	74089050	+	0	NA	Intergenic	Intergenic	-6175	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
214124	chr7	144201951	144202850	+	0	NA	intron (NR_126022, intron 1 of 4).3	intron (NR_126022, intron 1 of 4).3	-6521	NM_001368318	445328		NM_001003702	ENSG00000213214	ARHGEF35	ARHGEF5L	Rho guanine nucleotide exchange factor 35	protein-coding
173344	chr4	7761501	7761980	+	0	NA	3' UTR (NM_001134647, exon 18 of 18)	3' UTR (NM_001134647, exon 18 of 18)	7650	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
117070	chr19	19053551	19054480	+	0	NA	intron (NM_033415, intron 4 of 7)	intron (NM_033415, intron 4 of 7)	-9979	NM_001321544	284439		NM_178526	ENSG00000181035	SLC25A42	MECREN	solute carrier family 25 member 42	protein-coding
48623	chr12	10378421	10379330	+	0	NA	intron (NM_001199805, intron 10 of 12)	AluSz|SINE|Alu	11166	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
207571	chr7	44921751	44922440	+	0	NA	Intergenic	Intergenic	-36565	NM_033224	5814		NM_033224	ENSG00000146676	PURB	PURBETA	purine rich element binding protein B	protein-coding
57071	chr12	121016121	121017180	+	0	NA	promoter-TSS (NR_104409)	promoter-TSS (NR_104409)	-163	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
217918	chr8	37996221	37996580	+	0	NA	Intergenic	Intergenic	-29801	NM_000025	155		NM_000025	ENSG00000188778	ADRB3	BETA3AR	adrenoceptor beta 3	protein-coding
91996	chr17	7440171	7442400	+	0	NA	intron (NM_001303460, intron 1 of 4)	intron (NM_001303460, intron 1 of 4)	517	NM_001303460	2256		NM_004112	ENSG00000161958	FGF11	FGF-11|FHF-3|FHF3	fibroblast growth factor 11	protein-coding
45606	chr11	118902351	118902830	+	0	NA	exon (NM_182557, exon 6 of 8)	exon (NM_182557, exon 6 of 8)	7952	NM_182557	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
72483	chr15	32610721	32611250	+	0	NA	intron (NR_135833, intron 1 of 2)	intron (NR_135833, intron 1 of 2)	3761	NR_135833	101928042		NR_135833		ARHGAP11A-DT	-	ARHGAP11A divergent transcript	ncRNA
25789	chr10	11171001	11171900	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	6420	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
21781	chr1	206930071	206931100	+	0	NA	intron (NM_002644, intron 10 of 10)	intron (NM_002644, intron 10 of 10)	-8644	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
43000	chr11	73971101	73971600	+	0	NA	Intergenic	MIRc|SINE|MIR	11493	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
226807	chr9	77171821	77172080	+	0	NA	Intergenic	LTR50|LTR|ERVL	-5495	NM_015186	23230		NM_015186	ENSG00000197969	VPS13A	BLTP5A|CHAC|CHOREIN	vacuolar protein sorting 13 homolog A	protein-coding
235157	chrX	41118171	41118900	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	33090	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
105159	chr17	82257271	82258130	+	0	NA	intron (NM_139062, intron 2 of 9)	intron (NM_139062, intron 2 of 9)	16000	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
56481	chr12	116194971	116195500	+	0	NA	intron (NM_015335, intron 2 of 30)	L1MEi|LINE|L1	-46581	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
34339	chr10	132186411	132187600	+	0	NA	promoter-TSS (NM_006426)	promoter-TSS (NM_006426)	57	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
188606	chr5	157190251	157191500	+	0	NA	intron (NM_005546, intron 1 of 16)	L2b|LINE|L2	10035	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
66294	chr14	61394451	61394550	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	73057	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
138268	chr2	203533451	203533550	+	0	NA	intron (NM_001329728, intron 1 of 15)	Tigger19b|DNA|TcMar-Tigger	1801	NM_203365	65059		NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
23847	chr1	234705701	234706050	+	0	NA	Intergenic	Intergenic	-18167	NR_038856	100506810		NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
95589	chr17	37358471	37360030	+	0	NA	promoter-TSS (NM_198836).2	promoter-TSS (NM_198836).2	-134	NM_198836	31		NM_000664	ENSG00000278540	ACACA	ACAC|ACACAD|ACACalpha|ACC|ACC1|ACCA|ACCalpha|Acac1|hACC1	acetyl-CoA carboxylase alpha	protein-coding
91581	chr17	5220271	5220430	+	0	NA	intron (NR_152840, intron 4 of 5)	FLAM_A|SINE|Alu	14510	NM_001319190	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
225754	chr9	37187221	37187480	+	0	NA	intron (NM_001289119, intron 2 of 8)	MER1B|DNA|hAT-Charlie	66752	NM_001289120	84186		NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
215701	chr8	1373001	1373400	+	0	NA	intron (NM_001346810, intron 3 of 14)	CpG	-70593	NR_111948	286083		NR_033895	ENSG00000275427	LOC286083	-	uncharacterized LOC286083	ncRNA
41937	chr11	67302071	67302330	+	0	NA	exon (NM_001347901, exon 16 of 16)	exon (NM_001347901, exon 16 of 16)	-1330	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
212668	chr7	129603701	129603900	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7920	NM_001293163	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
69573	chr14	97032871	97033380	+	0	NA	Intergenic	Intergenic	89546	NR_104113	145249		NR_104113		LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
169857	chr3	177194851	177195450	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	1328	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
184016	chr5	91279501	91281550	+	0	NA	Intergenic	Intergenic	33877	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
188956	chr5	160506201	160507500	+	0	NA	Intergenic	Intergenic	21498	NR_029701	406938		NR_029701	ENSG00000283733	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
157239	chr22	43341821	43342080	+	0	NA	intron (NM_173050, intron 1 of 21)	intron (NM_173050, intron 1 of 21)	1422	NM_173050	80274		NM_152514	ENSG00000159307	SCUBE1	-	signal peptide, CUB domain and EGF like domain containing 1	protein-coding
141505	chr2	241148371	241149800	+	0	NA	promoter-TSS (NM_001282409)	promoter-TSS (NM_001282409)	387	NM_001252122	23178		NM_015148	ENSG00000115687	PASK	PASKIN|STK37	PAS domain containing serine/threonine kinase	protein-coding
71428	chr14	105602971	105603130	+	0	NA	Intergenic	(CCCAG)n|Simple_repeat|Simple_repeat	-18066	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
187069	chr5	140143821	140144750	+	0	NA	Intergenic	Intergenic	-13034	NR_130738	101929719		NR_130738	ENSG00000254363	LOC101929719	-	uncharacterized LOC101929719	ncRNA
233043	chr9	137048471	137049030	+	0	NA	exon (NM_001246, exon 9 of 9)	exon (NM_001246, exon 9 of 9)	-2573	NM_015392	56654		NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
88129	chr16	81614201	81614880	+	0	NA	intron (NM_030629, intron 2 of 20)	intron (NM_030629, intron 2 of 20)	3192	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
18174	chr1	160802951	160803350	+	0	NA	TTS (NM_001033667)	TTS (NM_001033667)	6976	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
94433	chr17	29146421	29146880	+	0	NA	intron (NM_001346765, intron 2 of 42)	MLT1K|LTR|ERVL-MaLR	-6261	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
204498	chr7	4770521	4771230	+	0	NA	3' UTR (NM_001037165, exon 9 of 9)	3' UTR (NM_001037165, exon 9 of 9)	-4748	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
49883	chr12	39103571	39103800	+	0	NA	Intergenic	Intergenic	-198094	NM_153634	144402		NM_153634	ENSG00000139117	CPNE8	-	copine 8	protein-coding
31218	chr10	91415751	91416100	+	0	NA	intron (NM_182765, intron 1 of 20)	intron (NM_182765, intron 1 of 20)	5581	NM_001284274	143279		NM_173497	ENSG00000165338	HECTD2	-	HECT domain E3 ubiquitin protein ligase 2	protein-coding
121070	chr19	45876101	45877000	+	0	NA	Intergenic	Intergenic	9591	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
106537	chr18	21591901	21592100	+	0	NA	intron (NM_052911, intron 1 of 11)	SVA_D|Retroposon|SVA	8704	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
236539	chrX	72129971	72130330	+	0	NA	exon (NM_001024455, exon 1 of 2)	exon (NM_001024455, exon 1 of 2)	1765	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
151889	chr22	18881151	18881580	+	0	NA	intron (NR_136571, intron 4 of 11)	intron (NR_136571, intron 4 of 11)	13066	NR_136571	100996432		NR_136571		FAM230F	LINC01663	family with sequence similarity 230 member F	ncRNA
24598	chr1	246081201	246081480	+	0	NA	intron (NM_001375963, intron 5 of 11)	intron (NM_001375963, intron 5 of 11)	-92789	NM_001375966	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
221918	chr8	129497121	129497580	+	0	NA	intron (NR_130917, intron 1 of 3)	intron (NR_130917, intron 1 of 3)	-13208	NR_037457	100500839		NR_037457	ENSG00000263763	MIR3686	-	microRNA 3686	ncRNA
51413	chr12	52009111	52009650	+	0	NA	intron (NM_181711, intron 2 of 7)	intron (NM_181711, intron 2 of 7)	-1112	NM_001271856	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
22181	chr1	212291301	212292200	+	0	NA	intron (NM_006243, intron 1 of 12)	intron (NM_006243, intron 1 of 12)	6340	NM_006243	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
225653	chr9	36398001	36398300	+	0	NA	intron (NM_194330, intron 1 of 11)	L2c|LINE|L2	2119	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
214977	chr7	152076071	152076530	+	0	NA	intron (NM_001371474, intron 1 of 4)	intron (NM_001371474, intron 1 of 4)	1263	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
133324	chr2	113896121	113896830	+	0	NA	intron (NM_001277140, intron 1 of 11)	intron (NM_001277140, intron 1 of 11)	-5483	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128524	chr2	60745621	60746400	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-10258	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
160579	chr3	30751621	30751880	+	0	NA	intron (NM_207359, intron 14 of 14)	intron (NM_207359, intron 14 of 14)	142911	NM_207359	339896		NM_207359	ENSG00000144644	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase like 1	protein-coding
36954	chr11	11155901	11156630	+	0	NA	Intergenic	LTR16A|LTR|ERVL	196985	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
81230	chr16	4539851	4540830	+	0	NA	Intergenic	L2a|LINE|L2	-1567	NM_013399	29965		NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
22888	chr1	225841851	225842880	+	0	NA	intron (NR_165626, intron 6 of 7)	intron (NR_165626, intron 6 of 7)	17011	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
26713	chr10	22664321	22664880	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	49508	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
228988	chr9	113569251	113569350	+	0	NA	intron (NM_001351526, intron 2 of 8)	intron (NM_001351526, intron 2 of 8)	4243	NM_001351526	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
41455	chr11	66109051	66109600	+	0	NA	intron (NM_018026, intron 1 of 23)	AluJo|SINE|Alu	39053	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
116381	chr19	17942551	17943550	+	0	NA	intron (NM_138442, intron 3 of 4)	intron (NM_138442, intron 3 of 4)	7954	NM_138442	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
118899	chr19	38698621	38699230	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	45549	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
158819	chr3	9745321	9745780	+	0	NA	intron (NR_160918, intron 11 of 14)	intron (NR_160918, intron 11 of 14)	-4394	NR_148930	4968		NM_002542	ENSG00000114026	OGG1	HMMH|HOGG1|MUTM|OGH1	8-oxoguanine DNA glycosylase	protein-coding
74869	chr15	63560501	63561430	+	0	NA	intron (NR_046342, intron 8 of 15)	intron (NR_046342, intron 8 of 15)	-36422	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
73619	chr15	44571471	44571630	+	0	NA	intron (NM_025137, intron 33 of 39)	AluYm1|SINE|Alu	34403	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
182167	chr5	56638771	56639530	+	0	NA	Intergenic	Intergenic	-32894	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
225903	chr9	39872971	39873130	+	0	NA	promoter-TSS (NR_126048)	promoter-TSS (NR_126048)	-803	NR_126048	102724238		NR_126048	ENSG00000204802	FAM88C	Lnc-PPRL	family with sequence similarity 88 member C	ncRNA
134795	chr2	147884851	147885150	+	0	NA	intron (NM_001278579, intron 2 of 11)	intron (NM_001278579, intron 2 of 11)	39971	NM_001616	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
219	chr1	826921	828020	+	0	NA	promoter-TSS (NR_024321)	promoter-TSS (NR_024321)	52	NR_024321	79854		NM_024796		LINC00115	NCRNA00115	long intergenic non-protein coding RNA 115	ncRNA
197995	chr6	90074971	90075330	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	180681	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
86142	chr16	57720221	57720500	+	0	NA	intron (NM_001289162, intron 9 of 18)	intron (NM_001289162, intron 9 of 18)	-15410	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
2911	chr1	11688601	11688800	+	0	NA	intron (NM_001127325, intron 1 of 8)	MER41A|LTR|ERV1	2921	NM_001127325	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
87005	chr16	68242671	68243030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2523	NM_001363551	23659		NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	phospholipase A2 group XV	protein-coding
50880	chr12	49200121	49200400	+	0	NA	Intergenic	AluSx|SINE|Alu	-10936	NM_001270400	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
49721	chr12	31317101	31318350	+	0	NA	intron (NM_021238, intron 1 of 6)	MIR|SINE|MIR	-6591	NR_026806	79857		NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
231396	chr9	130863551	130863950	+	0	NA	intron (NM_007313, intron 4 of 10)	intron (NM_007313, intron 4 of 10)	28496	NM_005157	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
62988	chr13	112305621	112305880	+	0	NA	Intergenic	Intergenic	-7717	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
44942	chr11	116781671	116782030	+	0	NA	intron (NM_001317086, intron 11 of 12)	AluSx3|SINE|Alu	6173	NM_003904	8882		NM_003904	ENSG00000109917	ZPR1	GKAF|ZNF259	ZPR1 zinc finger	protein-coding
88097	chr16	81519901	81520100	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-13902	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
2654	chr1	10432451	10432700	+	0	NA	intron (NR_037187, intron 1 of 2)	L2a|LINE|L2	1825	NR_036462	378708		NM_199294	ENSG00000175279	CENPS	APITD1|CENP-S|FAAP16|MHF1	centromere protein S	protein-coding
170720	chr3	188041151	188041450	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-64893	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
215639	chr8	228871	229050	+	0	NA	intron (NR_003572, intron 2 of 3)	intron (NR_003572, intron 2 of 3)	-3177	NM_001287255	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
89512	chr16	89166501	89166700	+	0	NA	intron (NR_046200, intron 1 of 2)	intron (NR_046200, intron 1 of 2)	217	NR_046200	400558		NR_046200	ENSG00000205015	LINC02138	-	long intergenic non-protein coding RNA 2138	ncRNA
162575	chr3	48668121	48668380	+	0	NA	intron (NR_111921, intron 2 of 2)	AluJb|SINE|Alu	4482	NR_111921	102724368		NR_111921	ENSG00000228350	LINC02585	CELSR3-AS1	long intergenic non-protein coding RNA 2585	ncRNA
618	chr1	1320101	1320300	+	0	NA	intron (NM_001256460, intron 4 of 17)	intron (NM_001256460, intron 4 of 17)	4460	NM_001256463	54973		NM_017871	ENSG00000127054	INTS11	CPSF3L|CPSF73L|INT11|NEDMLOB|PSF3L|RC-68|RC68	integrator complex subunit 11	protein-coding
141164	chr2	239263371	239263530	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-42012	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
226782	chr9	76613201	76613400	+	0	NA	non-coding (NR_131751, exon 16 of 16)	non-coding (NR_131751, exon 16 of 16)	79115	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
199441	chr6	117481271	117481800	+	0	NA	Intergenic	Intergenic	-1069	NM_173674	285761		NM_173674	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
41306	chr11	65878151	65878750	+	0	NA	Intergenic	Intergenic	-1387	NM_001335	1521		NM_001335	ENSG00000172543	CTSW	LYPN	cathepsin W	protein-coding
206663	chr7	36290171	36290530	+	0	NA	intron (NM_030636, intron 6 of 7)	intron (NM_030636, intron 6 of 7)	76890	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
183935	chr5	87408151	87408980	+	0	NA	intron (NM_001239, intron 3 of 8)	intron (NM_001239, intron 3 of 8)	4339	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
137591	chr2	197277801	197278980	+	0	NA	intron (NR_046837, intron 5 of 5)	AluSz|SINE|Alu	24129	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
80251	chr16	2211901	2213250	+	0	NA	3' UTR (NM_001042371, exon 2 of 2)	3' UTR (NM_001042371, exon 2 of 2)	-1507	NM_182563	283870		NM_182563	ENSG00000182685	BRICD5	C16orf79	BRICHOS domain containing 5	protein-coding
212940	chr7	130935601	130936000	+	0	NA	Intergenic	L2c|LINE|L2	22336	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
11705	chr1	91861021	91861480	+	0	NA	intron (NR_036634, intron 2 of 17)	AluJr|SINE|Alu	24901	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
97424	chr17	43488351	43488650	+	0	NA	intron (NM_001322217, intron 1 of 21)	AluY|SINE|Alu	4525	NM_001322220	1659		NM_004941	ENSG00000067596	DHX8	DDX8|Dhr2|HRH1|PRP22|PRPF22	DEAH-box helicase 8	protein-coding
62239	chr13	98531501	98531700	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-9475	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
53816	chr12	69276651	69276950	+	0	NA	Intergenic	AluJb|SINE|Alu	-3582	NR_031692	100302182		NR_031692	ENSG00000283476	MIR1279	MIRN1279|hsa-mir-1279	microRNA 1279	ncRNA
54666	chr12	93382271	93383230	+	0	NA	intron (NM_001301023, intron 1 of 4)	AluY|SINE|Alu	4172	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
164820	chr3	70980351	70981250	+	0	NA	intron (NM_001244810, intron 14 of 20)	intron (NM_001244810, intron 14 of 20)	84124	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
34631	chr10	133308501	133310550	+	0	NA	promoter-TSS (NM_001256617)	promoter-TSS (NM_001256617)	-369	NM_001256617	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
89388	chr16	88806121	88806880	+	0	NA	exon (NM_030928, exon 7 of 10)	exon (NM_030928, exon 7 of 10)	2711	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
231368	chr9	130665071	130665230	+	0	NA	intron (NM_021619, intron 1 of 4)	CpG-28907	556	NM_021619	59335		NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding
4980	chr1	24200951	24201250	+	0	NA	intron (NR_027087, intron 1 of 2)	AluJb|SINE|Alu	860	NR_027087	284632		NR_027087	ENSG00000230023	LINC02800	-	long intergenic non-protein coding RNA 2800	ncRNA
12733	chr1	109551371	109551530	+	0	NA	intron (NM_006496, intron 1 of 8)	intron (NM_006496, intron 1 of 8)	2835	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
209789	chr7	87599351	87599750	+	0	NA	intron (NM_001348946, intron 2 of 27)	intron (NM_001348946, intron 2 of 27)	1334	NM_001348946	5243		NM_000927	ENSG00000085563	ABCB1	ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1|p-170	ATP binding cassette subfamily B member 1	protein-coding
139787	chr2	230234001	230234400	+	0	NA	intron (NM_001278451, intron 1 of 25)	intron (NM_001278451, intron 1 of 25)	8464	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
68637	chr14	89773421	89774390	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-154740	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
139619	chr2	225054501	225055200	+	0	NA	Intergenic	MIRc|SINE|MIR	-12382	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
209617	chr7	77699251	77700150	+	0	NA	intron (NM_198467, intron 1 of 7)	Tigger15a|DNA|TcMar-Tigger	-2355	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
206764	chr7	36703751	36704180	+	0	NA	intron (NM_001177506, intron 1 of 21)	L1HS|LINE|L1	20529	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
162462	chr3	48502071	48502430	+	0	NA	intron (NM_001272066, intron 1 of 5)	intron (NM_001272066, intron 1 of 5)	1800	NM_001272068	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
174432	chr4	39568971	39569130	+	0	NA	intron (NM_174921, intron 3 of 4)	intron (NM_174921, intron 3 of 4)	41211	NR_047679	100885776		NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	ncRNA
138296	chr2	203717921	203718800	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	11721	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
40042	chr11	62705821	62706880	+	0	NA	promoter-TSS (NM_032667)	promoter-TSS (NM_032667)	-35	NM_032667	26580		NM_032667	ENSG00000168000	BSCL2	GNG3LG|HMN5|HMN5C|HMND13|PELD|SPG17	BSCL2 lipid droplet biogenesis associated, seipin	protein-coding
8632	chr1	41689601	41690200	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-205217	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
112190	chr19	5671801	5672430	+	0	NA	Intergenic	MIRb|SINE|MIR	8123	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
152110	chr22	19891501	19893030	+	0	NA	intron (NR_147957, intron 10 of 16)	intron (NR_147957, intron 10 of 16)	-37391	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
15154	chr1	148947501	148947930	+	0	NA	intron (NM_001198834, intron 5 of 43)	intron (NM_001198834, intron 5 of 43)	-4409	NM_001002811	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
83195	chr16	23504601	23506950	+	0	NA	intron (NM_015044, intron 1 of 16)	intron (NM_015044, intron 1 of 16)	4719	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
178076	chr4	140103621	140104050	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-24180	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
212696	chr7	129772171	129772330	+	0	NA	Intergenic	Intergenic	-1758	NR_029614	406958		NR_029614	ENSG00000207990	MIR182	MIRN182|miRNA182|mir-182	microRNA 182	ncRNA
125302	chr2	10620301	10620900	+	0	NA	intron (NM_024894, intron 13 of 20)	intron (NM_024894, intron 13 of 20)	69375	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
223672	chr8	144395321	144396080	+	0	NA	intron (NM_013291, intron 26 of 37)	intron (NM_013291, intron 26 of 37)	-1470	NR_030635	100126351		NR_030635	ENSG00000284310	MIR939	MIRN939|hsa-mir-939|mir-939	microRNA 939	ncRNA
114238	chr19	11500101	11500400	+	0	NA	intron (NM_138783, intron 1 of 8)	(CTGCCT)n|Simple_repeat|Simple_repeat	-4628	NR_107014	102465856		NR_107014	ENSG00000274713	MIR7974	hsa-mir-7974	microRNA 7974	ncRNA
40554	chr11	64323971	64324600	+	0	NA	Intergenic	Intergenic	-5689	NM_001372071	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
190244	chr5	178589801	178590750	+	0	NA	5' UTR (NM_173465, exon 1 of 29)	5' UTR (NM_173465, exon 1 of 29)	118	NM_173465	91522		NM_173465	ENSG00000050767	COL23A1	-	collagen type XXIII alpha 1 chain	protein-coding
103223	chr17	77488301	77488500	+	0	NA	intron (NM_001293697, intron 4 of 9)	intron (NM_001293697, intron 4 of 9)	12765	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
142111	chr20	2659921	2661230	+	0	NA	exon (NM_001330763, exon 7 of 13)	exon (NM_001330763, exon 7 of 13)	3636	NR_002738	26792		NR_002738	ENSG00000226572	SNORD57	RNU57|U57	small nucleolar RNA, C/D box 57	snoRNA
63947	chr14	22096501	22097100	+	0	NA	Intergenic	Intergenic	335953	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
233349	chr9	137453701	137455000	+	0	NA	intron (NM_001130969, intron 7 of 15)	(GCAGCAA)n|Simple_repeat|Simple_repeat	-4264	NR_106964	102466223		NR_106964	ENSG00000284317	MIR7114	hsa-mir-7114	microRNA 7114	ncRNA
187363	chr5	141799401	141799800	+	0	NA	Intergenic	MIRb|SINE|MIR	66602	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
228549	chr9	101531221	101531480	+	0	NA	Intergenic	Intergenic	-2503	NM_019592	56254		NM_019592	ENSG00000155827	RNF20	BRE1|BRE1A|hBRE1	ring finger protein 20	protein-coding
103347	chr17	78101951	78102250	+	0	NA	intron (NM_001142640, intron 19 of 21)	intron (NM_001142640, intron 19 of 21)	26655	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
83408	chr16	27201001	27201200	+	0	NA	Intergenic	L1PA7|LINE|L1	-2426	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
204466	chr7	4689151	4689450	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	7005	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
137417	chr2	196278571	196278730	+	0	NA	exon (NM_020760, exon 15 of 29)	exon (NM_020760, exon 15 of 29)	18626	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
113758	chr19	10508051	10508150	+	0	NA	Intergenic	AluSx3|SINE|Alu	-4744	NM_203500	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
216211	chr8	11914501	11915100	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-46713	NM_001384723	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
207419	chr7	44463201	44463700	+	0	NA	intron (NM_015332, intron 2 of 5)	intron (NM_015332, intron 2 of 5)	27208	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
83160	chr16	23463001	23463280	+	0	NA	TTS (NM_015044)	TTS (NM_015044)	-9951	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
51849	chr12	53468601	53469200	+	0	NA	intron (NM_031989, intron 13 of 14)	intron (NM_031989, intron 13 of 14)	4432	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
80948	chr16	3858151	3858650	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	21720	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
55841	chr12	109062701	109063100	+	0	NA	intron (NM_032663, intron 3 of 12)	L1MB3|LINE|L1	-8935	NR_038996	100131733		NR_038996		USP30-AS1	-	USP30 antisense RNA 1	ncRNA
1559	chr1	3495501	3495700	+	0	NA	intron (NM_001409, intron 30 of 36)	intron (NM_001409, intron 30 of 36)	40935	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
197482	chr6	75599821	75600130	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1534	NM_001304792	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
170173	chr3	183639221	183640680	+	0	NA	intron (NM_001349422, intron 2 of 7)	AluSx3|SINE|Alu	4327	NR_146170	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
239066	chrY	7297851	7298280	+	0	NA	intron (NR_028062, intron 1 of 7)	MLT1C|LTR|ERVL-MaLR	24093	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
165426	chr3	98515051	98515350	+	0	NA	TTS (NM_001040181)	TTS (NM_001040181)	7702	NM_001040181	56650		NM_019895	ENSG00000080822	CLDND1	C3orf4|GENX-3745|Z38	claudin domain containing 1	protein-coding
99184	chr17	49471171	49471330	+	0	NA	Intergenic	(GGGCA)n|Simple_repeat|Simple_repeat	-9501	NR_110805	101927207		NR_110805	ENSG00000249497	LINC02075	-	long intergenic non-protein coding RNA 2075	ncRNA
32742	chr10	104311621	104312050	+	0	NA	3' UTR (NM_001272013, exon 2 of 2)	3' UTR (NM_001272013, exon 2 of 2)	-11529	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
229151	chr9	114492471	114492700	+	0	NA	intron (NM_015404, intron 1 of 11)	L1ME4a|LINE|L1	10630	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
238407	chrX	150568151	150569800	+	0	NA	intron (NM_001376908, intron 1 of 14)	CpG	354	NM_000252	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
108409	chr18	69910651	69910750	+	0	NA	intron (NM_001303619, intron 1 of 4)	L1MD3|LINE|L1	37173	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
219104	chr8	65932921	65933180	+	0	NA	Intergenic	Intergenic	-81928	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
221692	chr8	126568101	126568500	+	0	NA	Intergenic	LTR43|LTR|ERV1	-9822	NR_156466	157638		NM_174911	ENSG00000168672	LRATD2	BCMP101|FAM84B|NSE2	LRAT domain containing 2	protein-coding
182239	chr5	57095321	57095580	+	0	NA	Intergenic	L1PB1|LINE|L1	-78498	NM_001203246	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
134822	chr2	148545751	148546050	+	0	NA	Intergenic	Intergenic	-98851	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
152069	chr22	19725221	19725480	+	0	NA	TTS (NR_037611)	TTS (NR_037611)	1811	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
60407	chr13	40968421	40969100	+	0	NA	intron (NM_001370329, intron 2 of 9)	AluJb|SINE|Alu	13522	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
206286	chr7	30019471	30019630	+	0	NA	intron (NR_046479, intron 1 of 2)	intron (NR_046479, intron 1 of 2)	7152	NM_017946	55033		NM_017946	ENSG00000106080	FKBP14	EDSKMH|EDSKSCL2|FKBP22|IPBP12	FKBP prolyl isomerase 14	protein-coding
58516	chr12	132187071	132187630	+	0	NA	non-coding (NR_146452, exon 2 of 2)	non-coding (NR_146452, exon 2 of 2)	2345	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
74520	chr15	60398601	60399950	+	0	NA	Intergenic	Intergenic	-1289	NM_001136015	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
98969	chr17	48719921	48720330	+	0	NA	Intergenic	Intergenic	2393	NM_032391	84366		NM_032391	ENSG00000159182	PRAC1	C17orf92|PRAC	PRAC1 small nuclear protein	protein-coding
49130	chr12	14913451	14913750	+	0	NA	TTS (NM_152321)	TTS (NM_152321)	15525	NM_001300784	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
103841	chr17	79612421	79612930	+	0	NA	Intergenic	Intergenic	-1624	NM_001350451	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
169678	chr3	171846771	171846930	+	0	NA	intron (NM_001164436, intron 1 of 4)	intron (NM_001164436, intron 1 of 4)	3501	NM_001164436	389177		NM_001164436	ENSG00000186329	TMEM212	-	transmembrane protein 212	protein-coding
200322	chr6	133888371	133888730	+	0	NA	promoter-TSS (NM_003206)	promoter-TSS (NM_003206)	456	NR_109982	100507308		NR_109982	ENSG00000227954	TARID	EYA4-AS1	TCF21 antisense RNA inducing promoter demethylation	ncRNA
55148	chr12	98698801	98699080	+	0	NA	intron (NM_013229, intron 16 of 26)	intron (NM_013229, intron 16 of 26)	53640	NM_181869	317		NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
160546	chr3	30673621	30674230	+	0	NA	intron (NM_001024847, intron 5 of 7)	intron (NM_001024847, intron 5 of 7)	67324	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
161643	chr3	43309321	43309780	+	0	NA	intron (NM_017719, intron 3 of 6)	Tigger1|DNA|TcMar-Tigger	23010	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
186921	chr5	139599651	139599950	+	0	NA	intron (NM_181838, intron 2 of 7)	AluSz|SINE|Alu	38461	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
4019	chr1	18936571	18936730	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	20026	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
116506	chr19	18148921	18150650	+	0	NA	3' UTR (NM_015016, exon 27 of 27)	3' UTR (NM_015016, exon 27 of 27)	-3378	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
75508	chr15	66404371	66404730	+	0	NA	intron (NM_002755, intron 1 of 10)	intron (NM_002755, intron 1 of 10)	17638	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
132791	chr2	110203121	110203430	+	0	NA	intron (NM_001374256, intron 1 of 19)	L1PA16|LINE|L1	1738	NM_001374256	4867		NM_000272	ENSG00000144061	NPHP1	JBTS4|NPH1|SLSN1	nephrocystin 1	protein-coding
199712	chr6	125302871	125303750	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-1343	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
185296	chr5	126596801	126597200	+	0	NA	Intergenic	AluJb|SINE|Alu	-1781	NM_001201377	501		NM_001182	ENSG00000164904	ALDH7A1	ATQ1|EPD|EPEO4|PDE	aldehyde dehydrogenase 7 family member A1	protein-coding
84048	chr16	29576551	29576850	+	0	NA	intron (NR_135305, intron 1 of 13)	FRAM|SINE|Alu	18392	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
85933	chr16	57132501	57132850	+	0	NA	intron (NM_152727, intron 12 of 15)	intron (NM_152727, intron 12 of 15)	40092	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
56765	chr12	120159821	120160400	+	0	NA	intron (NM_006836, intron 23 of 57)	intron (NM_006836, intron 23 of 57)	-4611	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
80771	chr16	3181621	3181950	+	0	NA	Intergenic	Intergenic	-6419	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
214808	chr7	151204221	151204880	+	0	NA	exon (NM_001304419, exon 2 of 19)	exon (NM_001304419, exon 2 of 19)	946	NM_001304419	392843		NM_001304419	ENSG00000278685	IQCA1L	IQCA1P1	IQ motif containing with AAA domain 1 like	protein-coding
167775	chr3	133384551	133384650	+	0	NA	intron (NM_023943, intron 4 of 5)	intron (NM_023943, intron 4 of 5)	-15456	NM_003571	8419		NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding
21490	chr1	205714171	205714330	+	0	NA	3' UTR (NM_022731, exon 7 of 7)	3' UTR (NM_022731, exon 7 of 7)	-33741	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
193022	chr6	28355051	28355150	+	0	NA	promoter-TSS (NM_145909)	promoter-TSS (NM_145909)	-896	NM_145909	64288		NM_030899	ENSG00000235109	ZSCAN31	ZNF20-Lp|ZNF310P|ZNF323	zinc finger and SCAN domain containing 31	protein-coding
157167	chr22	42937401	42937680	+	0	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	9501	NM_007229	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
155974	chr22	39904101	39904430	+	0	NA	intron (NM_004810, intron 1 of 7)	AluSx1|SINE|Alu	3181	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
32308	chr10	102151701	102153730	+	0	NA	intron (NM_004741, intron 1 of 12)	CpG	326	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
205860	chr7	24965771	24967330	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	13628	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
178227	chr4	142840521	142840800	+	0	NA	intron (NM_001385337, intron 1 of 20)	intron (NM_001385337, intron 1 of 20)	5641	NM_001385335	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
3562	chr1	16158851	16158950	+	0	NA	Intergenic	Intergenic	-2831	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
56790	chr12	120197021	120197530	+	0	NA	intron (NM_053275, intron 7 of 7)	intron (NM_053275, intron 7 of 7)	-2560	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
50133	chr12	45655121	45655780	+	0	NA	Intergenic	Intergenic	72471	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
161744	chr3	44512801	44513000	+	0	NA	Intergenic	AluSx|SINE|Alu	-2283	NM_001287349	285346		NM_001287349	ENSG00000178917	ZNF852	-	zinc finger protein 852	protein-coding
183502	chr5	79507901	79508300	+	0	NA	intron (NM_001277077, intron 1 of 5)	intron (NM_001277077, intron 1 of 5)	5736	NM_001277077	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
179937	chr5	768371	768530	+	0	NA	intron (NM_001351303, intron 2 of 13)	intron (NM_001351303, intron 2 of 13)	16279	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
21465	chr1	205588671	205589080	+	0	NA	intron (NM_181644, intron 6 of 9)	intron (NM_181644, intron 6 of 9)	-19570	NR_152721	284578		NR_027086		MFSD4A-AS1	-	MFSD4A antisense RNA 1	ncRNA
39447	chr11	60936001	60936530	+	0	NA	TTS (NR_027391)	TTS (NR_027391)	11805	NM_178031	54972		NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
208138	chr7	63925671	63927400	+	0	NA	Intergenic	AluYc|SINE|Alu	-72271	NR_145488								
178343	chr4	145846551	145846770	+	0	NA	intron (NM_178835, intron 6 of 14)	AluSx|SINE|Alu	92163	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
132460	chr2	105870171	105870750	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	18613	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
178192	chr4	142401751	142402350	+	0	NA	intron (NM_001385379, intron 2 of 21)	intron (NM_001385379, intron 2 of 21)	1083	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
235100	chrX	40468321	40468580	+	0	NA	Intergenic	Intergenic	-112520	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
127455	chr2	42199001	42199400	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-28969	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
155038	chr22	37483101	37483300	+	0	NA	intron (NM_002405, intron 1 of 7)	L2|LINE|L2	3184	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
8609	chr1	41638621	41638880	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-154067	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
106316	chr18	12896861	12898050	+	0	NA	Intergenic	AluJb|SINE|Alu	-13120	NM_080422	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
28547	chr10	50576421	50576780	+	0	NA	intron (NM_147156, intron 2 of 10)	intron (NM_147156, intron 2 of 10)	47356	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
153702	chr22	29271821	29272280	+	0	NA	intron (NM_001163286, intron 1 of 15)	intron (NM_001163286, intron 1 of 15)	3782	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
226850	chr9	78004371	78004880	+	0	NA	intron (NM_002072, intron 1 of 6)	LTR16C|LTR|ERVL	27186	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
135606	chr2	168088951	168089550	+	0	NA	intron (NM_013233, intron 10 of 17)	intron (NM_013233, intron 10 of 17)	-148106	NR_131227	105616981		NR_131227	ENSG00000235335	B3GALT1-AS1	-	B3GALT1 antisense RNA 1	ncRNA
228576	chr9	104143451	104143750	+	0	NA	Intergenic	L1MA9|LINE|L1	48973	NM_001042550	10592		NM_006444	ENSG00000136824	SMC2	CAP-E|CAPE|SMC-2|SMC2L1	structural maintenance of chromosomes 2	protein-coding
233376	chr9	137514471	137514630	+	0	NA	intron (NM_001098537, intron 12 of 34)	intron (NM_001098537, intron 12 of 34)	35852	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
185268	chr5	124583671	124584030	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-145330	NR_125774	103724389		NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
72444	chr15	31974851	31975430	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	-55343	NR_046324	1139		NM_000746	ENSG00000175344	CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor nicotinic alpha 7 subunit	protein-coding
96704	chr17	41526901	41527100	+	0	NA	intron (NM_002276, intron 1 of 5)	intron (NM_002276, intron 1 of 5)	1308	NM_002276	3880		NM_002276	ENSG00000171345	KRT19	CK19|K19|K1CS	keratin 19	protein-coding
178049	chr4	139665471	139666630	+	0	NA	exon (NM_002413, exon 1 of 5)	exon (NM_002413, exon 1 of 5)	231	NM_001204368	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
219565	chr8	78720551	78720650	+	0	NA	TTS (NR_156423)	TTS (NR_156423)	3774	NR_077236	101241902		NR_077236		C4orf46P3	-	C4orf46 pseudogene 3	pseudo
100923	chr17	64468501	64468700	+	0	NA	TTS (NM_001291316)	TTS (NM_001291316)	19485	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
193944	chr6	31663101	31663300	+	0	NA	intron (NM_001199240, intron 3 of 3).7	AluSx|SINE|Alu	1797	NM_033177	7918		NM_033177	ENSG00000204438	GPANK1	ANKRD59|BAT4|D6S54E|G5|GPATCH10	G-patch domain and ankyrin repeats 1	protein-coding
52602	chr12	56223301	56223500	+	0	NA	promoter-TSS (NM_024068)	promoter-TSS (NM_024068)	-942	NM_024068	79035		NM_024068	ENSG00000139579	NABP2	OBFC2B|SOSS-B1|SSB1|hSSB1	nucleic acid binding protein 2	protein-coding
135956	chr2	172082451	172083750	+	0	NA	TTS (NM_199227)	TTS (NM_199227)	-2407	NM_001038493	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
147813	chr20	62685871	62686650	+	0	NA	Intergenic	Intergenic	-19639	NR_024470	100127888		NR_024470	ENSG00000232803	SLCO4A1-AS1	-	SLCO4A1 antisense RNA 1	ncRNA
123090	chr19	51421401	51422450	+	0	NA	Intergenic	CpG	-4283	NM_001171158	89790		NM_033130	ENSG00000142512	SIGLEC10	PRO940|SIGLEC-10|SLG2	sialic acid binding Ig like lectin 10	protein-coding
116887	chr19	18685651	18685950	+	0	NA	intron (NM_015321, intron 1 of 13)	intron (NM_015321, intron 1 of 13)	2120	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
6663	chr1	29122901	29123700	+	0	NA	promoter-TSS (NM_001171868)	promoter-TSS (NM_001171868)	603	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
130518	chr2	85607951	85608050	+	0	NA	3' UTR (NM_001013649, exon 4 of 4)	3' UTR (NM_001013649, exon 4 of 4)	4066	NM_001013649	388969		NM_001013649	ENSG00000168887	C2orf68	HCRCN81	chromosome 2 open reading frame 68	protein-coding
164571	chr3	64014951	64015050	+	0	NA	intron (NM_014814, intron 5 of 7)	L2a|LINE|L2	8472	NM_001271781	9861		NM_014814	ENSG00000163636	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	proteasome 26S subunit, non-ATPase 6	protein-coding
144115	chr20	33947701	33947980	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	-46071	NM_007367	22913		NM_007367	ENSG00000125970	RALY	HNRPCL2|P542	RALY heterogeneous nuclear ribonucleoprotein	protein-coding
88327	chr16	84506151	84506730	+	0	NA	Intergenic	AluJb|SINE|Alu	-1781	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
152363	chr22	20493271	20493680	+	0	NA	intron (NR_033825, intron 1 of 5)	intron (NR_033825, intron 1 of 5)	2320	NM_032775	84861		NM_032775	ENSG00000099910	KLHL22	KELCHL	kelch like family member 22	protein-coding
169351	chr3	160398571	160400300	+	0	NA	promoter-TSS (NM_001288753)	promoter-TSS (NM_001288753)	-210	NM_001190241	57560		NM_020800	ENSG00000068885	IFT80	ATD2|CFAP167|FAP167|SRTD2|WDR56	intraflagellar transport 80	protein-coding
74671	chr15	61974171	61974750	+	0	NA	intron (NM_017684, intron 22 of 82)	intron (NM_017684, intron 22 of 82)	85987	NM_017684	54832		NM_017684	ENSG00000129003	VPS13C	BLTP5C|PARK23	vacuolar protein sorting 13 homolog C	protein-coding
239098	chrY	10845621	10845700	+	0	NA	Intergenic	(TTCCA)n|Simple_repeat|Simple_repeat	934862	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
71646	chr14	106788621	106788880	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	62249	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
180235	chr5	1592871	1593030	+	0	NA	intron (NR_003263, intron 2 of 6)	AluJr|SINE|Alu	1581	NR_003263	728609		NR_003263	ENSG00000291055	SDHAP3	SDHACL|SDHAL	SDHA pseudogene 3	pseudo
17946	chr1	160354301	160354650	+	0	NA	intron (NM_001349729, intron 11 of 15)	intron (NM_001349729, intron 11 of 15)	11092	NM_001290184	23385		NM_015331	ENSG00000162736	NCSTN	ATAG1874	nicastrin	protein-coding
141932	chr20	1223301	1223800	+	0	NA	Intergenic	L1PA5|LINE|L1	-2494	NM_001384357	642636		NM_001136566	ENSG00000244588	RAD21L1	RAD21L|dJ545L17.2	RAD21 cohesin complex component like 1	protein-coding
227271	chr9	89375351	89376350	+	0	NA	intron (NR_163887, intron 13 of 15)	intron (NR_163887, intron 13 of 15)	56999	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
150065	chr21	37393851	37394300	+	0	NA	intron (NM_001347723, intron 1 of 10)	MLT1G1|LTR|ERVL-MaLR	-24830	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
19559	chr1	179078771	179079600	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-2885	NM_022371	64222		NM_022371	ENSG00000186283	TOR3A	ADIR|ADIR2	torsin family 3 member A	protein-coding
231431	chr9	131239771	131240580	+	0	NA	Intergenic	L1MEc|LINE|L1	36335	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
136005	chr2	172425851	172426150	+	0	NA	Intergenic	Intergenic	-1336	NM_001316306	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
187110	chr5	140403501	140403700	+	0	NA	intron (NM_020690, intron 1 of 35)	AluSc8|SINE|Alu	1767	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
149923	chr21	36209621	36209950	+	0	NA	intron (NM_001320714, intron 5 of 36)	intron (NM_001320714, intron 5 of 36)	45244	NM_005128	9980		NM_005128	ENSG00000142197	DOP1B	21orf5|C21orf5|DOPEY2	DOP1 leucine zipper like protein B	protein-coding
148233	chr20	63628201	63628800	+	0	NA	non-coding (NR_132418, exon 2 of 2)	non-coding (NR_132418, exon 2 of 2)	1265	NR_132418	100505771		NR_132417	ENSG00000232442	MHENCR	-	melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489	ncRNA
38686	chr11	46559801	46561730	+	0	NA	intron (NM_001367471, intron 1 of 18)	intron (NM_001367471, intron 1 of 18)	26679	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
93920	chr17	21292601	21292800	+	0	NA	intron (NM_002756, intron 1 of 11)	AluSz|SINE|Alu	4664	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
20564	chr1	198719871	198720250	+	0	NA	intron (NM_002838, intron 14 of 32)	L1ME4a|LINE|L1	81020	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
219472	chr8	73386801	73387000	+	0	NA	Intergenic	Intergenic	-30439	NR_125388	101926926		NR_125388	ENSG00000250295	RDH10-AS1	-	RDH10 antisense RNA 1	ncRNA
191126	chr6	4059051	4059540	+	0	NA	intron (NR_146785, intron 14 of 20)	intron (NR_146785, intron 14 of 20)	19842	NM_173563	222826		NM_173563	ENSG00000145975	FAM217A	C6orf146	family with sequence similarity 217 member A	protein-coding
42216	chr11	68034551	68035250	+	0	NA	TTS (NR_039840)	TTS (NR_039840)	1003	NR_039840	100616403		NR_039840	ENSG00000284435	MIR4691	mir-4691	microRNA 4691	ncRNA
115181	chr19	14436001	14436530	+	0	NA	intron (NM_002741, intron 1 of 21)	AluY|SINE|Alu	2959	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
73539	chr15	43829351	43830400	+	0	NA	intron (NM_024908, intron 2 of 12)	MER5A|DNA|hAT-Charlie	2873	NM_001167941	79968		NM_024908	ENSG00000092470	WDR76	CDW14|CMR1	WD repeat domain 76	protein-coding
136884	chr2	189297601	189298000	+	0	NA	Intergenic	Intergenic	-118039	NM_000393	1290		NM_000393	ENSG00000204262	COL5A2	EDSC|EDSCL2	collagen type V alpha 2 chain	protein-coding
8116	chr1	39214571	39216080	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	131158	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
159218	chr3	12901621	12902180	+	0	NA	intron (NM_001330619, intron 12 of 12)	intron (NM_001330619, intron 12 of 12)	-16689	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
119298	chr19	39827101	39827700	+	0	NA	exon (NM_006483, exon 8 of 11).2	exon (NM_006483, exon 8 of 11).2	2402	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
50355	chr12	47193621	47194550	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	6273	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
54681	chr12	93405121	93405580	+	0	NA	TTS (NM_003348)	TTS (NM_003348)	26772	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
188780	chr5	157740301	157740900	+	0	NA	3' UTR (NM_001317824, exon 6 of 6)	3' UTR (NM_001317824, exon 6 of 6)	-3112	NM_173491	134353		NM_173491	ENSG00000155858	LSM11	AGS8	LSM11, U7 small nuclear RNA associated	protein-coding
35859	chr11	2375251	2375830	+	0	NA	promoter-TSS (NM_001297649)	promoter-TSS (NM_001297649)	-637	NM_001297649	975		NM_004356	ENSG00000110651	CD81	CVID6|S5.7|TAPA1|TSPAN28	CD81 molecule	protein-coding
31851	chr10	99838301	99838700	+	0	NA	intron (NM_000392, intron 25 of 31)	SVA_F|Retroposon|SVA	55860	NM_000392	1244		NM_000392	ENSG00000023839	ABCC2	ABC30|CMOAT|DJS|MRP2|cMRP	ATP binding cassette subfamily C member 2	protein-coding
127023	chr2	37079701	37080430	+	0	NA	intron (NM_019024, intron 2 of 35)	L2a|LINE|L2	4307	NM_019024	54497		NM_019024	ENSG00000008869	HEATR5B	p200|p200a	HEAT repeat containing 5B	protein-coding
133873	chr2	129686471	129686630	+	0	NA	Intergenic	L1HS|LINE|L1	190941	NR_149127	105373615		NR_149127	ENSG00000229536	LINC02572	-	long intergenic non-protein coding RNA 2572	ncRNA
165782	chr3	105787251	105787930	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	80001	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
72055	chr15	28834201	28834400	+	0	NA	intron (NR_037599, intron 11 of 13)	AluSg7|SINE|Alu	14385	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
206813	chr7	37031921	37032260	+	0	NA	intron (NM_014800, intron 15 of 21)	intron (NM_014800, intron 15 of 21)	34294	NR_104120	100861514		NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
142105	chr20	2654821	2655350	+	0	NA	promoter-TSS (NR_002981)	promoter-TSS (NR_002981)	18	NR_002981	677831		NR_002981	ENSG00000271798	SNORA51	ACA51	small nucleolar RNA, H/ACA box 51	snoRNA
46011	chr11	121590901	121591750	+	0	NA	intron (NM_003105, intron 31 of 47)	intron (NM_003105, intron 31 of 47)	-109536	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
197726	chr6	87127301	87127950	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	-27940	NM_015021	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
31158	chr10	90867201	90867400	+	0	NA	Intergenic	Intergenic	-4674	NM_001104546	10556		NM_006413	ENSG00000148688	RPP30	TSG15	ribonuclease P/MRP subunit p30	protein-coding
1264	chr1	2304971	2305950	+	0	NA	intron (NM_003036, intron 5 of 6)	CpG	47201	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
134926	chr2	151288971	151290780	+	0	NA	promoter-TSS (NM_004688)	promoter-TSS (NM_004688)	-207	NM_004688	9111		NM_004688	ENSG00000123609	NMI	-	N-myc and STAT interactor	protein-coding
210342	chr7	99509101	99509300	+	0	NA	intron (NM_145102, intron 2 of 6)	AluSx|SINE|Alu	3195	NM_001318084	23660		NM_014569	ENSG00000196652	ZKSCAN5	ZFP-95|ZFP95|ZNF914|ZSCAN37	zinc finger with KRAB and SCAN domains 5	protein-coding
73768	chr15	45526001	45526200	+	0	NA	intron (NR_022014, intron 3 of 5)	Tigger1|DNA|TcMar-Tigger	-3345	NM_013309	7782		NM_013309	ENSG00000104154	SLC30A4	ZNT4|znT-4	solute carrier family 30 member 4	protein-coding
162224	chr3	47056701	47057880	+	0	NA	exon (NM_014159, exon 15 of 21)	exon (NM_014159, exon 15 of 21)	45748	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
29023	chr10	63683221	63683680	+	0	NA	Intergenic	Intergenic	-161560	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
40313	chr11	63891221	63891680	+	0	NA	intron (NM_017490, intron 1 of 17)	intron (NM_017490, intron 1 of 17)	2913	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
181710	chr5	50664671	50666160	+	0	NA	promoter-TSS (NM_001178055)	promoter-TSS (NM_001178055)	-516	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
195562	chr6	37491601	37492450	+	0	NA	intron (NM_138493, intron 1 of 3)	intron (NM_138493, intron 1 of 3)	7868	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
113821	chr19	10608301	10608500	+	0	NA	intron (NM_001145056, intron 1 of 21)	intron (NM_001145056, intron 1 of 21)	5945	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
179492	chr4	184624921	184625600	+	0	NA	promoter-TSS (NR_131967)	promoter-TSS (NR_131967)	-388	NR_131967	105377586		NR_131965	ENSG00000254233	LINC02365	LVCAT8	long intergenic non-protein coding RNA 2365	ncRNA
216205	chr8	11869501	11870150	+	0	NA	Intergenic	Intergenic	-1738	NM_001384723	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
23652	chr1	230974351	230974450	+	0	NA	intron (NM_024525, intron 1 of 22)	Tigger3a|DNA|TcMar-Tigger	4461	NM_001376509	79573		NM_024525	ENSG00000143643	TTC13	-	tetratricopeptide repeat domain 13	protein-coding
175930	chr4	80361301	80361530	+	0	NA	intron (NM_001206997, intron 1 of 6)	intron (NM_001206997, intron 1 of 6)	25685	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
221375	chr8	123388201	123389100	+	0	NA	intron (NM_014109, intron 1 of 27)	AluSz|SINE|Alu	7797	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
95050	chr17	32528721	32529380	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	42057	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
218172	chr8	41962101	41962300	+	0	NA	intron (NM_001305878, intron 8 of 13)	L2a|LINE|L2	-65459	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
123483	chr19	54181771	54181930	+	0	NA	intron (NM_024298, intron 5 of 7).3	intron (NM_024298, intron 5 of 7).3	7730	NM_024298	79143		NM_024298	ENSG00000125505	MBOAT7	BB1|LENG4|LPIAT|LPIAT1|LPLAT|LPLAT11|LRC4|MBOA7|MRT57|OACT7|hMBOA-7	membrane bound O-acyltransferase domain containing 7	protein-coding
221840	chr8	128226321	128226600	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	76344	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
124776	chr2	7427221	7428130	+	0	NA	intron (NR_038432, intron 2 of 5)	intron (NR_038432, intron 2 of 5)	6414	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
15722	chr1	151046151	151046850	+	0	NA	intron (NM_138278, intron 9 of 9)	intron (NM_138278, intron 9 of 9)	-1251	NM_017860	54964		NM_017860	ENSG00000143443	C1orf56	MENT	chromosome 1 open reading frame 56	protein-coding
195475	chr6	37068751	37069050	+	0	NA	Intergenic	Intergenic	63245	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
106585	chr18	22169251	22170180	+	0	NA	promoter-TSS (NR_102763)	promoter-TSS (NR_102763)	126	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
194073	chr6	31874451	31875130	+	0	NA	exon (NM_025257, exon 6 of 21).5	exon (NM_025257, exon 6 of 21).5	2881	NM_001178045	80736		NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1	solute carrier family 44 member 4	protein-coding
126474	chr2	28369651	28369950	+	0	NA	Intergenic	MIR|SINE|MIR	-23058	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
227344	chr9	89463811	89465250	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	15360	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
42028	chr11	67430901	67431530	+	0	NA	intron (NM_003952, intron 4 of 14)	AluSx|SINE|Alu	2721	NM_003952	6199		NM_003952	ENSG00000175634	RPS6KB2	KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb	ribosomal protein S6 kinase B2	protein-coding
181567	chr5	43160201	43160400	+	0	NA	intron (NM_003432, intron 4 of 7)	AluJb|SINE|Alu	-31925	NM_153361	167359		NM_153361	ENSG00000177453	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
17816	chr1	159855901	159856100	+	0	NA	promoter-TSS (NR_147122)	promoter-TSS (NR_147122)	-963	NR_147125	284677		NM_001134233	ENSG00000188004	SNHG28	C1orf204|VSIG8-OT1	small nucleolar RNA host gene 28	ncRNA
14340	chr1	143971201	143974000	+	0	NA	promoter-TSS (NR_120535)	promoter-TSS (NR_120535)	-39	NR_120535	100996712		NM_001271887		SRGAP2D	-	SLIT-ROBO Rho GTPase activating protein 2D (pseudogene)	pseudo
172649	chr4	2592621	2593330	+	0	NA	intron (NM_001366318, intron 1 of 20)	L1MEc|LINE|L1	-32457	NM_003704	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
139869	chr2	230636501	230637150	+	0	NA	Intergenic	Intergenic	63704	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
182494	chr5	62778921	62779180	+	0	NA	Intergenic	Intergenic	200231	NM_181506	100130733		NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
209867	chr7	90404971	90405130	+	0	NA	intron (NM_012129, intron 1 of 2)	AluJr|SINE|Alu	1589	NM_001185073	9069		NM_012129	ENSG00000157224	CLDN12	-	claudin 12	protein-coding
93656	chr17	19192921	19193180	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2805	NR_006881	780853		NR_006881		SNORD3C	RNU3-3|U3-3	small nucleolar RNA, C/D box 3C	snoRNA
2925	chr1	11735351	11737530	+	0	NA	intron (NM_001040195, intron 1 of 3)	intron (NM_001040195, intron 1 of 3)	304	NM_020350	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
59310	chr13	24281721	24282130	+	0	NA	intron (NM_001286794, intron 2 of 10)	intron (NM_001286794, intron 2 of 10)	11175	NM_001286793	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
141497	chr2	241111071	241111750	+	0	NA	intron (NM_001252120, intron 16 of 18)	intron (NM_001252120, intron 16 of 18)	-9078	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
126102	chr2	25879971	25880330	+	0	NA	Intergenic	AluSz|SINE|Alu	-1663	NM_018263	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
151767	chr22	17995571	17995730	+	0	NA	intron (NM_015241, intron 1 of 31)	AluSx|SINE|Alu	-14689	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
190877	chr6	2245031	2246650	+	0	NA	promoter-TSS (NM_001500)	promoter-TSS (NM_001500)	87	NR_046229	100508120		NR_046229	ENSG00000250903	GMDS-DT	GMDS-AS1	GMDS divergent transcript	ncRNA
90039	chr16	89909911	89911000	+	0	NA	intron (NM_014972, intron 16 of 17)	intron (NM_014972, intron 16 of 17)	-8407	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
135852	chr2	170821651	170821750	+	0	NA	intron (NM_000817, intron 2 of 16)	intron (NM_000817, intron 2 of 16)	4813	NM_000817	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
153445	chr22	25093571	25093900	+	0	NA	intron (NM_001145206, intron 4 of 10)	(AC)n|Simple_repeat|Simple_repeat	18957	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
80111	chr16	2026371	2028250	+	0	NA	intron (NM_001130012, intron 1 of 6)	CpG	408	NM_001130012	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
139735	chr2	229832421	229833200	+	0	NA	3' UTR (NM_001348334, exon 7 of 7)	3' UTR (NM_001348334, exon 7 of 7)	88869	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
142564	chr20	5229671	5229830	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	87204	NM_144773	128674		NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
147286	chr20	57604721	57606050	+	0	NA	intron (NM_030776, intron 7 of 7)	Tigger1|DNA|TcMar-Tigger	15041	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
164456	chr3	59514951	59515380	+	0	NA	Intergenic	Intergenic	143332	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
161175	chr3	39111521	39112300	+	0	NA	intron (NM_001105513, intron 4 of 27)	intron (NM_001105513, intron 4 of 27)	-3547	NM_031899	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
25299	chr10	6199071	6199830	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-3482	NM_001363545	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
21291	chr1	204452001	204452280	+	0	NA	intron (NM_001377335, intron 14 of 35)	intron (NM_001377335, intron 14 of 35)	-40323	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
212818	chr7	130425151	130425450	+	0	NA	intron (NM_001257160, intron 2 of 2)	AluSz6|SINE|Alu	15716	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
98070	chr17	45488771	45489530	+	0	NA	intron (NM_014798, intron 1 of 11).3	intron (NM_014798, intron 1 of 11).3	1571	NR_027774	9842		NM_014798	ENSG00000225190	PLEKHM1	AP162|B2|OPTA3|OPTB6	pleckstrin homology and RUN domain containing M1	protein-coding
8323	chr1	40160871	40162130	+	0	NA	exon (NM_012421, exon 1 of 8)	exon (NM_012421, exon 1 of 8)	113	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
202452	chr6	158048001	158048200	+	0	NA	intron (NM_003898, intron 5 of 26)	L2c|LINE|L2	31007	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
239107	chrY	11210201	11210400	+	0	NA	Intergenic	AluY|SINE|Alu	1211290	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
170645	chr3	187063471	187064230	+	0	NA	intron (NM_173216, intron 5 of 7)	MIRb|SINE|MIR	25132	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
166754	chr3	122091771	122091930	+	0	NA	intron (NM_001206924, intron 2 of 5)	intron (NM_001206924, intron 2 of 5)	14001	NM_176892	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
228451	chr9	99838821	99839080	+	0	NA	intron (NM_173200, intron 6 of 8)	intron (NM_173200, intron 6 of 8)	17065	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
109109	chr18	80031501	80032100	+	0	NA	intron (NM_001305563, intron 1 of 3)	PRIMA4-int|LTR|ERV1	2136	NM_001305563	10907		NM_006701	ENSG00000141759	TXNL4A	BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD	thioredoxin like 4A	protein-coding
218404	chr8	47305051	47305150	+	0	NA	intron (NR_104581, intron 5 of 16)	MSTD|LTR|ERVL-MaLR	44162	NM_001080394	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
92162	chr17	7688001	7690100	+	0	NA	exon (NM_018081, exon 1 of 10)	exon (NM_018081, exon 1 of 10)	573	NM_001143992	55135		NM_018081	ENSG00000141499	WRAP53	DKCB3|TCAB1|WDR79	WD repeat containing antisense to TP53	protein-coding
194379	chr6	32985771	32986000	+	0	NA	Intergenic	Intergenic	12801	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
183987	chr5	89396621	89396880	+	0	NA	intron (NR_136221, intron 5 of 6)	intron (NR_136221, intron 5 of 6)	-492645	NM_001193347	4208		NM_002397	ENSG00000081189	MEF2C	C5DELq14.3|DEL5q14.3|NEDHSIL	myocyte enhancer factor 2C	protein-coding
55911	chr12	109735471	109735630	+	0	NA	intron (NR_026662, intron 2 of 2)	intron (NR_026662, intron 2 of 2)	21725	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
80818	chr16	3464121	3464680	+	0	NA	intron (NM_001317095, intron 1 of 5)	intron (NM_001317095, intron 1 of 5)	6355	NM_001317097	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
91566	chr17	5117051	5117150	+	0	NA	promoter-TSS (NM_001320954)	promoter-TSS (NM_001320954)	-652	NM_001320954	7775		NM_014519	ENSG00000167840	ZNF232	ZSCAN11	zinc finger protein 232	protein-coding
51919	chr12	53695271	53696330	+	0	NA	Intergenic	Intergenic	-19470	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
167144	chr3	127823451	127823550	+	0	NA	promoter-TSS (NM_001256585)	promoter-TSS (NM_001256585)	-250	NM_001003794	11343		NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
110943	chr19	2839001	2839200	+	0	NA	Intergenic	AluSp|SINE|Alu	-2375	NM_001172775	148254		NM_152791	ENSG00000186300	ZNF555	-	zinc finger protein 555	protein-coding
3989	chr1	18911771	18912130	+	0	NA	intron (NM_001136265, intron 6 of 8)	intron (NM_001136265, intron 6 of 8)	-9151	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
120741	chr19	45394351	45394650	+	0	NA	intron (NM_001142502, intron 7 of 12)	AluSz|SINE|Alu	10569	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
127329	chr2	39079551	39080050	+	0	NA	intron (NM_001382394, intron 1 of 22)	L1ME3D|LINE|L1	41251	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
26008	chr10	12194351	12195200	+	0	NA	intron (NM_001321647, intron 1 of 8)	intron (NM_001321647, intron 1 of 8)	1116	NM_014142	11164		NM_014142	ENSG00000165609	NUDT5	YSA1|YSA1H|YSAH1|hNUDT5	nudix hydrolase 5	protein-coding
210193	chr7	98877771	98879390	+	0	NA	promoter-TSS (NM_001244580)	promoter-TSS (NM_001244580)	48	NM_001375524	8295		NM_003496	ENSG00000196367	TRRAP	DEDDFA|DFNA75|PAF350/400|PAF400|STAF40|TR-AP|Tra1	transformation/transcription domain associated protein	protein-coding
199559	chr6	118888071	118888430	+	0	NA	intron (NM_001378357, intron 8 of 13)	AluY|SINE|Alu	-5902	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
148581	chr21	5055171	5055530	+	0	NA	Intergenic	Intergenic	32796	NM_001283050	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
209438	chr7	76392751	76394130	+	0	NA	exon (NM_080744, exon 9 of 11)	exon (NM_080744, exon 9 of 11)	-4082	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
99685	chr17	50762901	50763300	+	0	NA	intron (NM_001358683, intron 3 of 3)	AluSc|SINE|Alu	4418	NM_001358683	55018		NM_017928	ENSG00000167117	ANKRD40CL	C17orf73|LINC00483	ANKRD40 C-terminal like	protein-coding
94939	chr17	32061901	32062380	+	0	NA	Intergenic	Intergenic	21804	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
193208	chr6	29790201	29790550	+	0	NA	TTS (NR_002139)	TTS (NR_002139)	-1531	NR_132323	352962		NM_001207043	ENSG00000290710	HLA-V	HLA-75|dJ377H14.4	major histocompatibility complex, class I, V (pseudogene)	pseudo
166903	chr3	124768871	124769100	+	0	NA	intron (NM_001354766, intron 11 of 13)	intron (NM_001354766, intron 11 of 13)	36546	NR_036088	100422864		NR_036088	ENSG00000265981	MIR544B	-	microRNA 544b	ncRNA
158669	chr3	5125371	5125680	+	0	NA	intron (NM_018184, intron 1 of 6)	intron (NM_018184, intron 1 of 6)	3233	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
215715	chr8	1607721	1608080	+	0	NA	intron (NM_001346810, intron 6 of 14)	L1PA2|LINE|L1	13764	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
15214	chr1	149398001	149398200	+	0	NA	intron (NM_001364013, intron 1 of 4)	intron (NM_001364013, intron 1 of 4)	7462	NM_001364013	100996717		NM_001364012	ENSG00000286219	NOTCH2NLC	ETM6|N2N|NIID|NOTCH2NL|NOTCH2NLA|OPDM3	notch 2 N-terminal like C	protein-coding
34511	chr10	132588671	132589230	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	51163	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
119266	chr19	39518151	39518450	+	0	NA	intron (NR_146916, intron 1 of 3)	AluY|SINE|Alu	2877	NR_146916	348303		NM_182704	ENSG00000186838	SELENOV	SELV	selenoprotein V	protein-coding
151510	chr21	46422351	46422650	+	0	NA	intron (NM_006031, intron 32 of 46)	intron (NM_006031, intron 32 of 46)	-36391	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
111590	chr19	4086351	4086650	+	0	NA	Intergenic	Intergenic	-19601	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
201091	chr6	142820801	142821400	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	124076	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
68517	chr14	88613651	88613750	+	0	NA	TTS (NM_001326316)	TTS (NM_001326316)	19280	NM_207662	79882		NM_024824	ENSG00000100722	ZC3H14	MRT56|MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
69092	chr14	92120871	92123250	+	0	NA	promoter-TSS (NM_001322270)	promoter-TSS (NM_001322270)	91	NM_017437	53981		NM_017437	ENSG00000165934	CPSF2	CPSF100	cleavage and polyadenylation specific factor 2	protein-coding
30830	chr10	86399721	86400400	+	0	NA	Intergenic	CpG	-33265	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
31396	chr10	95243001	95243200	+	0	NA	intron (NM_020992, intron 5 of 6)	intron (NM_020992, intron 5 of 6)	47903	NM_020992	9124		NM_020992	ENSG00000107438	PDLIM1	CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1	PDZ and LIM domain 1	protein-coding
94288	chr17	28722971	28723130	+	0	NA	promoter-TSS (NR_000014)	promoter-TSS (NR_000014)	-379	NR_000014	26809		NR_000014	ENSG00000238649	SNORD42A	RNU42A|U42|U42A	small nucleolar RNA, C/D box 42A	snoRNA
50406	chr12	47355951	47356550	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	8019	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
141511	chr2	241204621	241205450	+	0	NA	intron (NM_001370694, intron 10 of 24)	intron (NM_001370694, intron 10 of 24)	16358	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
140109	chr2	231481321	231481780	+	0	NA	Intergenic	Intergenic	-17066	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
89632	chr16	89325121	89325430	+	0	NA	TTS (NR_168302)	TTS (NR_168302)	4823	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
76300	chr15	74318471	74319030	+	0	NA	intron (NM_182791, intron 1 of 8)	intron (NM_182791, intron 1 of 8)	191	NM_182791	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
141836	chr20	432371	432530	+	0	NA	TTS (NM_031229)	TTS (NM_031229)	24151	NR_136659	10616		NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RANBP2-type and C3HC4-type zinc finger containing 1	protein-coding
166653	chr3	120004071	120004600	+	0	NA	intron (NM_001146156, intron 1 of 10)	L1PA7|LINE|L1	80313	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
137638	chr2	197388821	197389500	+	0	NA	TTS (NM_012433)	TTS (NM_012433)	45868	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
38879	chr11	47376921	47377180	+	0	NA	intron (NM_001080547, intron 1 of 4)	intron (NM_001080547, intron 1 of 4)	1497	NM_003120	6688		NM_003120	ENSG00000066336	SPI1	AGM10|OF|PU.1|SFPI1|SPI-1|SPI-A	Spi-1 proto-oncogene	protein-coding
128275	chr2	54586771	54586930	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	28456	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
158580	chr3	4589701	4590100	+	0	NA	intron (NM_002222, intron 4 of 57)	intron (NM_002222, intron 4 of 57)	96552	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
21562	chr1	206383601	206383800	+	0	NA	intron (NM_001377446, intron 4 of 21)	intron (NM_001377446, intron 4 of 21)	-86776	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
75192	chr15	64782201	64782950	+	0	NA	Intergenic	Intergenic	-6986	NM_194272	348093		NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
157006	chr22	42518351	42520500	+	0	NA	intron (NM_015703, intron 1 of 6)	intron (NM_015703, intron 1 of 6)	371	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
22166	chr1	212242251	212242550	+	0	NA	intron (NR_125984, intron 1 of 3)	intron (NR_125984, intron 1 of 3)	-7664	NR_125982	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
119784	chr19	41315571	41315930	+	0	NA	intron (NM_001346100, intron 1 of 4)	AluJr4|SINE|Alu	5273	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
8450	chr1	40691001	40693130	+	0	NA	promoter-TSS (NM_001142590)	promoter-TSS (NM_001142590)	57	NM_001142590	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
188852	chr5	159217151	159217450	+	0	NA	Intergenic	L2b|LINE|L2	-7247	NM_001199380	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
144101	chr20	33818371	33818530	+	0	NA	intron (NM_176812, intron 1 of 4)	L3|LINE|CR1	7102	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
7504	chr1	33349021	33350850	+	0	NA	promoter-TSS (NM_004427)	promoter-TSS (NM_004427)	-36	NM_004427	1912		NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2	protein-coding
120412	chr19	43788851	43789250	+	0	NA	Intergenic	L2a|LINE|L2	-8077	NM_002250	3783		NM_002250	ENSG00000104783	KCNN4	DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium calcium-activated channel subfamily N member 4	protein-coding
218096	chr8	38966121	38966800	+	0	NA	intron (NM_021623, intron 10 of 11)	intron (NM_021623, intron 10 of 11)	-7768	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
172676	chr4	2739021	2739280	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	17186	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
53946	chr12	71842051	71842150	+	0	NA	intron (NR_027449, intron 1 of 15)	intron (NR_027449, intron 1 of 15)	2341	NM_022771	64786		NM_022771	ENSG00000121749	TBC1D15	RAB7-GAP	TBC1 domain family member 15	protein-coding
89415	chr16	88871471	88871630	+	0	NA	Intergenic	Intergenic	-1398	NM_001294328	390748		NM_001080487	ENSG00000205022	PABPN1L	PABPNL1|ePABP2	PABPN1 like, cytoplasmic	protein-coding
9192	chr1	45608771	45609400	+	0	NA	intron (NM_001195193, intron 4 of 12)	intron (NM_001195193, intron 4 of 12)	14969	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
83694	chr16	28435251	28435350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8846	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
15655	chr1	150869501	150869930	+	0	NA	intron (NM_001350224, intron 1 of 22)	AluJo|SINE|Alu	6884	NM_001197325	405		NM_001668	ENSG00000143437	ARNT	ARNT1|HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2	aryl hydrocarbon receptor nuclear translocator	protein-coding
147663	chr20	62266301	62266530	+	0	NA	intron (NM_001363878, intron 5 of 14)	intron (NM_001363878, intron 5 of 14)	27894	NM_001278649	9885		NM_014835	ENSG00000130703	OSBPL2	DFNA67|DNFA67|ORP-2|ORP2	oxysterol binding protein like 2	protein-coding
136011	chr2	172432871	172433030	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	5364	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
64378	chr14	24143271	24143430	+	0	NA	TTS (NR_106990)	TTS (NR_106990)	215	NR_106990	102465801		NR_106990	ENSG00000283856	MIR7703	hsa-mir-7703	microRNA 7703	ncRNA
42398	chr11	68998701	68998900	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-13554	NR_120541	101928200		NR_120541	ENSG00000256508	MRGPRF-AS1	-	MRGPRF antisense RNA 1	ncRNA
198141	chr6	90473571	90474180	+	0	NA	Intergenic	Intergenic	113197	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
6914	chr1	31626771	31626930	+	0	NA	exon (NM_001525, exon 9 of 9)	exon (NM_001525, exon 9 of 9)	9161	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
113570	chr19	10258921	10260200	+	0	NA	3' UTR (NM_146388, exon 8 of 8)	3' UTR (NM_146388, exon 8 of 8)	7346	NM_015956	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
16249	chr1	153960101	153961600	+	0	NA	intron (NM_001271961, intron 2 of 2)	intron (NM_001271961, intron 2 of 2)	1570	NR_106795	102465441		NR_106795	ENSG00000276584	MIR6737	hsa-mir-6737	microRNA 6737	ncRNA
124749	chr2	6915421	6915680	+	0	NA	intron (NR_033997, intron 3 of 4)	intron (NR_033997, intron 3 of 4)	-1862	NM_001349181	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
63034	chr13	112944651	112944750	+	0	NA	Intergenic	AluY|SINE|Alu	23938	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
203071	chr6	166286771	166287550	+	0	NA	Intergenic	MIR|SINE|MIR	21232	NM_175922	285800		NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
105634	chr18	839251	839780	+	0	NA	Intergenic	Intergenic	-27273	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
44812	chr11	113867771	113869230	+	0	NA	intron (NM_020886, intron 1 of 24)	intron (NM_020886, intron 1 of 24)	7072	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
165850	chr3	105861571	105861730	+	0	NA	intron (NM_001321811, intron 2 of 16)	intron (NM_001321811, intron 2 of 16)	5941	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
43662	chr11	85742751	85743130	+	0	NA	intron (NM_032943, intron 4 of 18)	intron (NM_032943, intron 4 of 18)	15129	NM_001162951	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
154100	chr22	31079121	31079530	+	0	NA	intron (NM_001382639, intron 2 of 22)	intron (NM_001382639, intron 2 of 22)	-1993	NR_168474	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
234038	chrX	3874001	3874200	+	0	NA	intron (NR_146581, intron 1 of 3)	CpG	8213	NR_146578	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
7736	chr1	36135351	36135650	+	0	NA	Intergenic	Intergenic	-10278	NM_001294347	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
66743	chr14	64509701	64510070	+	0	NA	intron (NM_001123329, intron 1 of 1)	AluY|SINE|Alu	-4672	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
107290	chr18	44724271	44724730	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	23625	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
147764	chr20	62497671	62498080	+	0	NA	Intergenic	Intergenic	-21880	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
58636	chr12	132507671	132507850	+	0	NA	intron (NR_168498, intron 2 of 3)	intron (NR_168498, intron 2 of 3)	2354	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
117414	chr19	19630051	19630150	+	0	NA	exon (NM_001288999, exon 20 of 20)	exon (NM_001288999, exon 20 of 20)	-1880	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
157494	chr22	45322951	45323450	+	0	NA	exon (NM_001349913, exon 3 of 9)	exon (NM_001349913, exon 3 of 9)	4757	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
3010	chr1	12067821	12068080	+	0	NA	intron (NM_001281430, intron 1 of 13)	intron (NM_001281430, intron 1 of 13)	4573	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
40235	chr11	63573951	63574950	+	0	NA	TTS (NM_001128203)	TTS (NM_001128203)	-11071	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
179985	chr5	880151	881000	+	0	NA	intron (NM_001375861, intron 10 of 16)	intron (NM_001375861, intron 10 of 16)	11947	NR_134296								
64667	chr14	31927221	31927680	+	0	NA	Intergenic	Intergenic	-17403	NR_146544	105370439		NR_146544	ENSG00000258474	LINC02313	-	long intergenic non-protein coding RNA 2313	ncRNA
63817	chr14	21450421	21451000	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	5413	NM_001170629	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
190371	chr5	179747051	179747350	+	0	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	14378	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
38661	chr11	46384971	46385580	+	0	NA	exon (NM_000741, exon 2 of 2)	exon (NM_000741, exon 2 of 2)	3564	NM_001012333	4192		NM_002391	ENSG00000110492	MDK	ARAP|MK|NEGF2	midkine	protein-coding
119683	chr19	40965101	40966350	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-25557	NM_000767	1555		NM_000767	ENSG00000197408	CYP2B6	CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450	cytochrome P450 family 2 subfamily B member 6	protein-coding
230463	chr9	128205101	128205480	+	0	NA	intron (NM_001374269, intron 1 of 21)	intron (NM_001374269, intron 1 of 21)	-1068	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
876	chr1	1634371	1634950	+	0	NA	TTS (NR_002946)	TTS (NR_002946)	1880	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
163195	chr3	50221151	50221450	+	0	NA	3' UTR (NM_006841, exon 16 of 16)	3' UTR (NM_006841, exon 16 of 16)	-5768	NM_001282620	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
18222	chr1	161022201	161022580	+	0	NA	Intergenic	Intergenic	-1238	NM_001382730	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
105733	chr18	2731751	2732330	+	0	NA	intron (NM_015295, intron 24 of 47)	intron (NM_015295, intron 24 of 47)	76314	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
80450	chr16	2674651	2674750	+	0	NA	Intergenic	Intergenic	-1261	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
4926	chr1	23910951	23911780	+	0	NA	intron (NM_001841, intron 1 of 1)	MamGypLTR1a|LTR|Gypsy	1997	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
143477	chr20	31060971	31061330	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-196514	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
23725	chr1	232222771	232222930	+	0	NA	Intergenic	MER72|LTR|ERV1	297016	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
29393	chr10	70135001	70135200	+	0	NA	Intergenic	Intergenic	-2166	NM_001198696	84883		NM_032797	ENSG00000042286	AIFM2	AMID|FSP1|PRG3	apoptosis inducing factor mitochondria associated 2	protein-coding
116769	chr19	18498951	18499480	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	22855	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
33579	chr10	119496201	119496850	+	0	NA	Intergenic	MER74A|LTR|ERVL	40008	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
146419	chr20	49567751	49568400	+	0	NA	promoter-TSS (NM_000961)	promoter-TSS (NM_000961)	62	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
84583	chr16	30647171	30647530	+	0	NA	Intergenic	LTR41|LTR|ERVL	-3428	NM_001320464	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
224724	chr9	21576321	21577350	+	0	NA	Intergenic	Intergenic	-17037	NR_152878	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
78839	chr15	99804501	99805030	+	0	NA	intron (NR_003260, intron 2 of 4)	intron (NR_003260, intron 2 of 4)	2162	NR_003260	196968		NM_194295	ENSG00000290767	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	dynamin 1 pseudogene 46	pseudo
135780	chr2	169733421	169734380	+	0	NA	promoter-TSS (NM_144711)	promoter-TSS (NM_144711)	68	NM_144711	151230		NM_144711	ENSG00000213160	KLHL23	DITHP	kelch like family member 23	protein-coding
69322	chr14	93219071	93219430	+	0	NA	non-coding (NR_038150, exon 7 of 10)	non-coding (NR_038150, exon 7 of 10)	11994	NM_175748	55148		NM_175748	ENSG00000012963	UBR7	C14orf130|LICAS	ubiquitin protein ligase E3 component n-recognin 7	protein-coding
116835	chr19	18576971	18577500	+	0	NA	3' UTR (NM_001033930, exon 5 of 5)	3' UTR (NM_001033930, exon 5 of 5)	4395	NM_001321021	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
28799	chr10	62181601	62181950	+	0	NA	Intergenic	L2a|LINE|L2	87069	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
19080	chr1	170533371	170533530	+	0	NA	promoter-TSS (NR_125958)	promoter-TSS (NR_125958)	-841	NR_125958	101928650		NR_125958		GORAB-AS1	-	GORAB antisense RNA 1	ncRNA
217430	chr8	28413871	28414030	+	0	NA	Intergenic	L1MC4|LINE|L1	-27490	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
174997	chr4	51107271	51107500	+	0	NA	Intergenic	SAR|Satellite|Satellite	-735615	NM_015115	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
190908	chr6	2793321	2794180	+	0	NA	Intergenic	Intergenic	-23374	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
209361	chr7	76281321	76281830	+	0	NA	exon (NM_001110199, exon 12 of 15)	exon (NM_001110199, exon 12 of 15)	-21098	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
2977	chr1	11978571	11978730	+	0	NA	Intergenic	Intergenic	-1531	NM_001127660	9927		NM_014874	ENSG00000116688	MFN2	CMT2A|CMT2A2|CMT2A2A|CMT2A2B|CPRP1|HMSN6A|HSG|MARF|MSL	mitofusin 2	protein-coding
82922	chr16	21818671	21818830	+	0	NA	exon (NM_001301064, exon 3 of 13)	exon (NM_001301064, exon 3 of 13)	424	NR_003370	730092		NR_003370		RRN3P1	-	RRN3 pseudogene 1	pseudo
70870	chr14	103763771	103763930	+	0	NA	intron (NM_015316, intron 4 of 16)	L1MB8|LINE|L1	48040	NM_024071	79038		NM_024071	ENSG00000100711	ZFYVE21	HCVP7TP1|ZF21	zinc finger FYVE-type containing 21	protein-coding
30728	chr10	84008951	84009050	+	0	NA	Intergenic	Charlie30a|DNA|hAT-Charlie	-130509	NM_014394	27069		NM_014394	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
74209	chr15	56174271	56174950	+	0	NA	intron (NM_001368073, intron 2 of 8)	AluSc|SINE|Alu	15322	NM_001370554	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
31026	chr10	88832721	88832980	+	0	NA	intron (NM_144590, intron 1 of 5)	L2b|LINE|L2	18994	NM_144590	118932		NM_144590	ENSG00000152766	ANKRD22	-	ankyrin repeat domain 22	protein-coding
82893	chr16	21611701	21612300	+	0	NA	intron (NM_016025, intron 1 of 4).2	intron (NM_016025, intron 1 of 4).2	12423	NM_016025	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
238595	chrX	153907421	153907880	+	0	NA	TTS (NR_027419)	TTS (NR_027419)	2936	NM_001146151	554		NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|NDI1|V2R	arginine vasopressin receptor 2	protein-coding
223395	chr8	143919701	143920300	+	0	NA	exon (NM_000445, exon 33 of 33)	exon (NM_000445, exon 33 of 33)	19597	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
23917	chr1	235025421	235025680	+	0	NA	Intergenic	Intergenic	44268	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
85439	chr16	50544751	50545050	+	0	NA	Intergenic	Intergenic	-3496	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
81431	chr16	8856221	8857730	+	0	NA	intron (NM_001278263, intron 3 of 3)	intron (NM_001278263, intron 3 of 3)	4835	NM_001278265	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
26173	chr10	14517521	14517780	+	0	NA	TTS (NM_001282696)	TTS (NM_001282696)	15064	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
94106	chr17	27844671	27844830	+	0	NA	Intergenic	AluY|SINE|Alu	-44221	NM_000625	4843		NM_000625	ENSG00000007171	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2	protein-coding
202920	chr6	160138151	160138480	+	0	NA	intron (NM_153187, intron 6 of 9)	MIR|SINE|MIR	16484	NM_153187	6580		NM_003057	ENSG00000175003	SLC22A1	HOCT1|OCT1|oct1_cds	solute carrier family 22 member 1	protein-coding
46640	chr11	128688601	128688800	+	0	NA	intron (NM_001271012, intron 1 of 6)	intron (NM_001271012, intron 1 of 6)	-1778	NR_135072	101929538		NR_135072	ENSG00000245008	LOC101929538	-	uncharacterized LOC101929538	ncRNA
226426	chr9	70609971	70610530	+	0	NA	intron (NM_206947, intron 18 of 24)	intron (NM_206947, intron 18 of 24)	-195593	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
2349	chr1	9250021	9250380	+	0	NA	intron (NM_004285, intron 3 of 4)	intron (NM_004285, intron 3 of 4)	10353	NM_001282587	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
190658	chr5	181245301	181245500	+	0	NA	Intergenic	L2b|LINE|L2	-1141	NR_109909	101928649		NR_109909	ENSG00000233937	CTC-338M12.4	-	uncharacterized LOC101928649	ncRNA
30183	chr10	74314071	74314430	+	0	NA	intron (NM_001369123, intron 3 of 9)	intron (NM_001369123, intron 3 of 9)	137487	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
194346	chr6	32885501	32886200	+	0	NA	Intergenic	Intergenic	-8326	NR_037177	100294145		NR_037177	ENSG00000289047	LOC100294145	-	uncharacterized LOC100294145	ncRNA
182006	chr5	55310471	55310900	+	0	NA	intron (NM_015360, intron 1 of 26)	intron (NM_015360, intron 1 of 26)	2696	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
6651	chr1	28980401	28980600	+	0	NA	intron (NM_001376013, intron 1 of 20)	AluJb|SINE|Alu	65924	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
41044	chr11	65457771	65458130	+	0	NA	intron (NR_160549, intron 2 of 2)	AluSc8|SINE|Alu	2664	NR_160547	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
131893	chr2	98744651	98744830	+	0	NA	Intergenic	Intergenic	-13608	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
98463	chr17	47099551	47100880	+	0	NA	Intergenic	CpG	89080	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
224623	chr9	20526401	20527330	+	0	NA	intron (NM_001286691, intron 2 of 10)	L1ME3A|LINE|L1	-24523	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
208894	chr7	73846551	73846650	+	0	NA	Intergenic	AluJo|SINE|Alu	-4084	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
218068	chr8	38917601	38919080	+	0	NA	intron (NM_021623, intron 2 of 11)	(AC)n|Simple_repeat|Simple_repeat	16994	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
104272	chr17	80789601	80790600	+	0	NA	intron (NM_020761, intron 6 of 33)	intron (NM_020761, intron 6 of 33)	15532	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
18714	chr1	167452051	167452150	+	0	NA	intron (NM_198053, intron 1 of 7)	AluSq2|SINE|Alu	66429	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
236300	chrX	68287451	68287550	+	0	NA	intron (NM_002547, intron 3 of 24)	intron (NM_002547, intron 3 of 24)	145995	NM_002547	4983		NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|MRXSBL|OPN1	oligophrenin 1	protein-coding
105116	chr17	82214471	82214630	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1708	NM_001367828	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
113327	chr19	8591501	8593080	+	0	NA	promoter-TSS (NM_001282352)	promoter-TSS (NM_001282352)	-94	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
234974	chrX	39336821	39337230	+	0	NA	Intergenic	Intergenic	-9663	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
205610	chr7	22147201	22147430	+	0	NA	intron (NM_001367600, intron 8 of 15)	intron (NM_001367600, intron 8 of 15)	46430	NM_001367601	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
148306	chr20	63733121	63733530	+	0	NA	exon (NM_032527, exon 3 of 7)	exon (NM_032527, exon 3 of 7)	-2376	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
113243	chr19	8493351	8493750	+	0	NA	intron (NM_032152, intron 4 of 9)	intron (NM_032152, intron 4 of 9)	9090	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
18675	chr1	167221801	167223850	+	0	NA	intron (NM_001198786, intron 1 of 14)	intron (NM_001198786, intron 1 of 14)	1939	NM_002697	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
42156	chr11	67733421	67733680	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-52326	NM_001031615	222		NM_000695	ENSG00000132746	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family member B2	protein-coding
180287	chr5	1883601	1884150	+	0	NA	promoter-TSS (NM_016358)	promoter-TSS (NM_016358)	-950	NM_016358	50805		NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
192526	chr6	25040771	25041600	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	1103	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
24102	chr1	235461771	235462190	+	0	NA	intron (NM_152490, intron 7 of 11)	MER47A|DNA|TcMar-Tigger	42472	NM_001277155	148789		NM_152490	ENSG00000162885	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
41552	chr11	66311421	66313850	+	0	NA	Intergenic	CpG	4409	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
181989	chr5	55222971	55224050	+	0	NA	intron (NM_001190787, intron 3 of 6)	CpG	3805	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
77081	chr15	78906421	78907030	+	0	NA	Intergenic	Intergenic	33736	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
221430	chr8	123816801	123817230	+	0	NA	Intergenic	Intergenic	-34972	NM_001039112	654463		NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1 like family member 6	protein-coding
236965	chrX	101389521	101389800	+	0	NA	intron (NM_001287344, intron 1 of 18)	intron (NM_001287344, intron 1 of 18)	1136	NM_001287344	695		NM_000061	ENSG00000010671	BTK	AGMX1|AT|ATK|BPK|IGHD3|IMD1|PSCTK1|XLA	Bruton tyrosine kinase	protein-coding
86396	chr16	66699701	66699900	+	0	NA	Intergenic	HAL1|LINE|L1	-3057	NM_178818	146223		NM_178818	ENSG00000183723	CMTM4	CKLFSF4	CKLF like MARVEL transmembrane domain containing 4	protein-coding
237270	chrX	110847221	110847480	+	0	NA	Intergenic	Intergenic	-51533	NM_001367204	91851		NM_145234	ENSG00000101938	CHRDL1	CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1	chordin like 1	protein-coding
52473	chr12	55968271	55968430	+	0	NA	intron (NM_052827, intron 3 of 5)	intron (NM_052827, intron 3 of 5)	1520	NM_001290230	1017		NM_001798	ENSG00000123374	CDK2	CDKN2|p33(CDK2)	cyclin dependent kinase 2	protein-coding
175637	chr4	76301421	76301680	+	0	NA	intron (NM_001242939, intron 6 of 6)	intron (NM_001242939, intron 6 of 6)	-4476	NM_003943	8987		NM_003943	ENSG00000118804	STBD1	GENEX3414|GENX-3414	starch binding domain 1	protein-coding
52325	chr12	54968351	54968950	+	0	NA	intron (NM_001351152, intron 1 of 8)	intron (NM_001351152, intron 1 of 8)	5082	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
38369	chr11	44616401	44617250	+	0	NA	intron (NM_002231, intron 7 of 9)	intron (NM_002231, intron 7 of 9)	51162	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
213403	chr7	137454271	137454430	+	0	NA	intron (NM_001321710, intron 27 of 32)	intron (NM_001321710, intron 27 of 32)	-110617	NM_001321387	5764		NM_002825	ENSG00000105894	PTN	HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1	pleiotrophin	protein-coding
56280	chr12	112128051	112128150	+	0	NA	intron (NM_001143906, intron 1 of 11)	AluSx1|SINE|Alu	2540	NM_006700	10906		NM_006700	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
70025	chr14	100094671	100095500	+	0	NA	intron (NM_016337, intron 2 of 13)	intron (NM_016337, intron 2 of 13)	14429	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
80617	chr16	2968621	2969600	+	0	NA	promoter-TSS (NM_001284512)	promoter-TSS (NM_001284512)	-238	NM_001284512	124222		NM_152341	ENSG00000162073	PAQR4	-	progestin and adipoQ receptor family member 4	protein-coding
76471	chr15	74862871	74863030	+	0	NA	intron (NM_001320778, intron 1 of 9)	AluJb|SINE|Alu	10415	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
44958	chr11	116830571	116830730	+	0	NA	intron (NM_000040, intron 2 of 3)	intron (NM_000040, intron 2 of 3)	743	NM_000040	345		NM_000040	ENSG00000110245	APOC3	APOCIII|Apo-C3|ApoC-3	apolipoprotein C3	protein-coding
194891	chr6	34679701	34680430	+	0	NA	intron (NM_022758, intron 1 of 3)	MLT1C|LTR|ERVL-MaLR	-16089	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
195330	chr6	36616201	36616400	+	0	NA	Intergenic	AluY|SINE|Alu	6212	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
184059	chr5	91492771	91492930	+	0	NA	Intergenic	Intergenic	-109533	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
166115	chr3	111080421	111080780	+	0	NA	intron (NM_001243288, intron 1 of 8)	intron (NM_001243288, intron 1 of 8)	8784	NM_001243288	25945		NM_015480	ENSG00000177707	NECTIN3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3	nectin cell adhesion molecule 3	protein-coding
188919	chr5	160400901	160401100	+	0	NA	promoter-TSS (NM_022090)	promoter-TSS (NM_022090)	-903	NM_001303251	63920		NM_022090	ENSG00000221886	FAM200C	Buster3|C5orf54|ZBED8	family with sequence similarity 200 member C	protein-coding
159674	chr3	15426801	15427880	+	0	NA	promoter-TSS (NM_033083)	promoter-TSS (NM_033083)	204	NM_152396	131965		NM_152396	ENSG00000206562	METTL6	hMETTL6	methyltransferase 6, tRNA N3-cytidine	protein-coding
143499	chr20	31470251	31470650	+	0	NA	intron (NM_001037500, intron 1 of 1)	SVA_D|Retroposon|SVA	2563	NM_001037500	245937		NM_001037500	ENSG00000180383	DEFB124	DEFB-24	defensin beta 124	protein-coding
153769	chr22	29551601	29552000	+	0	NA	intron (NM_001002877, intron 1 of 20)	SVA_C|Retroposon|SVA	1855	NM_001002878	8563		NM_003678	ENSG00000100296	THOC5	C22orf19|Fmip|PK1.3|fSAP79	THO complex subunit 5	protein-coding
16587	chr1	155018751	155019050	+	0	NA	TTS (NM_001252406)	TTS (NM_001252406)	14881	NM_144622	127579		NM_144622	ENSG00000163354	DCST2	SPE42	DC-STAMP domain containing 2	protein-coding
165978	chr3	108078951	108079330	+	0	NA	intron (NM_198793, intron 2 of 8)	intron (NM_198793, intron 2 of 8)	11891	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
13803	chr1	117572501	117573280	+	0	NA	Intergenic	Intergenic	32880	NR_121626	100996263		NR_121626	ENSG00000236866	TENT5C-DT	-	TENT5C divergent transcript	ncRNA
98599	chr17	47745651	47745950	+	0	NA	3' UTR (NM_013351, exon 6 of 6)	3' UTR (NM_013351, exon 6 of 6)	12564	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
225101	chr9	33437601	33437800	+	0	NA	Intergenic	AluSq2|SINE|Alu	9893	NM_004925	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
215154	chr7	155489221	155489480	+	0	NA	Intergenic	MIRb|SINE|MIR	20524	NM_001369821	285888		NM_001103176	ENSG00000146910	CNPY1	-	canopy FGF signaling regulator 1	protein-coding
146571	chr20	50077621	50077880	+	0	NA	Intergenic	AluSp|SINE|Alu	35400	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
11355	chr1	89616871	89617030	+	0	NA	Intergenic	Intergenic	15944	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
6443	chr1	28238651	28238750	+	0	NA	TTS (NM_178191)	TTS (NM_178191)	2576	NM_016311	93974		NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
189240	chr5	171975371	171975530	+	0	NA	intron (NM_012300, intron 1 of 12)	intron (NM_012300, intron 1 of 12)	31188	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
236851	chrX	79325171	79325730	+	0	NA	Intergenic	L1P3|LINE|L1	41884	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
133091	chr2	112581571	112581730	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2797	NR_163920	84269		NM_032309	ENSG00000125611	CHCHD5	C2orf9|CHTM1|MIC14|MIX14	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding
40058	chr11	62730551	62731330	+	0	NA	intron (NM_173810, intron 1 of 2)	AluSx1|SINE|Alu	2454	NM_173810	283237		NM_173810	ENSG00000162222	TTC9C	-	tetratricopeptide repeat domain 9C	protein-coding
74925	chr15	63729521	63730330	+	0	NA	intron (NM_003922, intron 14 of 77)	AluSq2|SINE|Alu	104023	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
92908	chr17	16456701	16457100	+	0	NA	intron (NM_001113567, intron 2 of 3)	intron (NM_001113567, intron 2 of 3)	15674	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
1596	chr1	3622351	3622900	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2390	NM_182752	127262		NM_182752	ENSG00000158109	TPRG1L	FAM79A|SVAP30|TPRGL|h-mover|mover	tumor protein p63 regulated 1 like	protein-coding
41756	chr11	66689271	66689430	+	0	NA	intron (NM_006946, intron 29 of 37)	AluSq2|SINE|Alu	-11463	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
126285	chr2	27202771	27203380	+	0	NA	non-coding (NR_028323, exon 11 of 17)	non-coding (NR_028323, exon 11 of 17)	9193	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
156570	chr22	41467321	41467580	+	0	NA	exon (NM_032758, exon 3 of 4)	exon (NM_032758, exon 3 of 4)	1242	NM_032758	84844		NM_032758	ENSG00000100410	PHF5A	INI|Rds3|SAP14b|SF3B7|SF3b14b|bK223H9.2	PHD finger protein 5A	protein-coding
158856	chr3	9831171	9831730	+	0	NA	intron (NR_037162, intron 10 of 10)	L1MC4|LINE|L1	12558	NM_001351736	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
60894	chr13	46153521	46153780	+	0	NA	intron (NM_002298, intron 6 of 15)	AluSq2|SINE|Alu	28527	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
195284	chr6	36512801	36513000	+	0	NA	intron (NM_007271, intron 7 of 13)	AluSx|SINE|Alu	34579	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
159773	chr3	16305871	16306030	+	0	NA	3' UTR (NM_001330670, exon 9 of 9)	3' UTR (NM_001330670, exon 9 of 9)	40738	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
27215	chr10	28663751	28664130	+	0	NA	Intergenic	Intergenic	-13581	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
104129	chr17	80361421	80361900	+	0	NA	intron (NM_001256071, intron 38 of 67)	intron (NM_001256071, intron 38 of 67)	-53507	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
173271	chr4	7050751	7051650	+	0	NA	intron (NM_152293, intron 1 of 1)	intron (NM_152293, intron 1 of 1)	-4969	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
234127	chrX	9786101	9786400	+	0	NA	promoter-TSS (NM_001649)	promoter-TSS (NM_001649)	-179	NM_001649	357		NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
9957	chr1	54775251	54775450	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-10827	NM_152268	25973		NM_152268	ENSG00000162396	PARS2	DEE75|EIEE75|MT-PRORS|proRS	prolyl-tRNA synthetase 2, mitochondrial	protein-coding
192722	chr6	26358271	26359280	+	0	NA	Intergenic	Intergenic	-6384	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
32278	chr10	102112271	102112680	+	0	NA	intron (NM_001321612, intron 1 of 10)	intron (NM_001321612, intron 1 of 10)	2527	NM_003893	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
151748	chr22	17819671	17819830	+	0	NA	intron (NM_015241, intron 25 of 31)	AluY|SINE|Alu	42460	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
189573	chr5	175483571	175484130	+	0	NA	intron (NM_001322981, intron 1 of 9)	intron (NM_001322981, intron 1 of 9)	5290	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
87692	chr16	74665421	74665800	+	0	NA	intron (NM_001370540, intron 1 of 13)	AluJb|SINE|Alu	1267	NM_018124	55159		NM_018124	ENSG00000168411	RFWD3	FANCW|RNF201	ring finger and WD repeat domain 3	protein-coding
145623	chr20	44684471	44684630	+	0	NA	Intergenic	L2a|LINE|L2	-12811	NR_034104	79015		NM_024049	ENSG00000283440	LINC01260	-	long intergenic non-protein coding RNA 1260	ncRNA
186770	chr5	139337211	139338250	+	0	NA	Intergenic	AluSc8|SINE|Alu	-4102	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
20994	chr1	202719521	202719980	+	0	NA	Intergenic	Intergenic	-9296	NM_177402	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
209848	chr7	90211521	90211980	+	0	NA	promoter-TSS (NM_152999)	promoter-TSS (NM_152999)	10	NM_152999	261729		NM_152999	ENSG00000157214	STEAP2	IPCA1|PCANAP1|PUMPCn|STAMP1|STMP	STEAP2 metalloreductase	protein-coding
165301	chr3	82133001	82133250	+	0	NA	intron (NR_147146, intron 1 of 8)	BLACKJACK|DNA|hAT-Blackjack	146983	NR_147146	105377180		NR_147146	ENSG00000239440	LINC02008	-	long intergenic non-protein coding RNA 2008	ncRNA
234292	chrX	13685601	13685830	+	0	NA	Intergenic	Intergenic	-3406	NM_001195328	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
165034	chr3	71418051	71418350	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-113429	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
122790	chr19	50330621	50332050	+	0	NA	intron (NR_110912, intron 1 of 3)	intron (NR_110912, intron 1 of 3)	-1958	NM_004977	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
181548	chr5	43109421	43110180	+	0	NA	Intergenic	L1MDa|LINE|L1	-11114	NM_001330704	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
138874	chr2	217007121	217007200	+	0	NA	Intergenic	Intergenic	136388	NR_130782	101928327		NR_130782		TESHL	LINC01921	testicular germ cell expressed HSF2 interacting lncRNA	ncRNA
201873	chr6	150642921	150643380	+	0	NA	intron (NR_138139, intron 2 of 4)	intron (NR_138139, intron 2 of 4)	10186	NR_138140	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
104994	chr17	82014271	82015300	+	0	NA	intron (NR_045351, intron 11 of 14)	intron (NR_045351, intron 11 of 14)	8093	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
152002	chr22	19202351	19202530	+	0	NA	intron (NM_001835, intron 22 of 31)	L2a|LINE|L2	-23577	NR_046298	6576		NM_005984	ENSG00000100075	SLC25A1	CIC|CMS23|CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
11406	chr1	89699501	89700400	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	66830	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
3783	chr1	16699351	16699650	+	0	NA	non-coding (NR_026567, exon 8 of 11)	non-coding (NR_026567, exon 8 of 11)	18245	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
93525	chr17	19025001	19025530	+	0	NA	intron (NM_006613, intron 3 of 4)	AluY|SINE|Alu	-20501	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
122461	chr19	49524671	49525130	+	0	NA	intron (NM_001136019, intron 5 of 6)	intron (NM_001136019, intron 5 of 6)	-3103	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
108462	chr18	70554451	70554550	+	0	NA	Intergenic	Intergenic	96454	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
54187	chr12	79689501	79690130	+	0	NA	exon (NM_001354733, exon 2 of 5)	exon (NM_001354733, exon 2 of 5)	765	NM_001354732	5074		NM_002583	ENSG00000177425	PAWR	PAR4|Par-4	pro-apoptotic WT1 regulator	protein-coding
74717	chr15	63135721	63135980	+	0	NA	intron (NM_032857, intron 5 of 5)	intron (NM_032857, intron 5 of 5)	13989	NM_001288585	114294		NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
47664	chr12	6327701	6328300	+	0	NA	TTS (NM_001346092)	TTS (NM_001346092)	14076	NM_001346091	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
59049	chr13	20667621	20668380	+	0	NA	intron (NR_148462, intron 26 of 28)	L2|LINE|L2	-33513	NM_001385225	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
156327	chr22	40653571	40653730	+	0	NA	Intergenic	Intergenic	-16931	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
67032	chr14	67599771	67601650	+	0	NA	promoter-TSS (NM_001363694)	promoter-TSS (NM_001363694)	-409	NM_001363694	5283		NM_004569	ENSG00000100564	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis class H	protein-coding
156243	chr22	40397151	40397250	+	0	NA	intron (NM_001350047, intron 1 of 20)	(TA)n|Simple_repeat|Simple_repeat	26606	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
141446	chr2	241034671	241034830	+	0	NA	intron (NM_001080437, intron 4 of 31)	intron (NM_001080437, intron 4 of 31)	36132	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
14019	chr1	120727951	120728380	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	4226	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
123158	chr19	52197521	52197780	+	0	NA	intron (NR_033500, intron 1 of 13)	AluJo|SINE|Alu	-3546	NM_001363656	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
1388	chr1	2538121	2538730	+	0	NA	Intergenic	Intergenic	-8162	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
142282	chr20	3210901	3211100	+	0	NA	intron (NM_001267623, intron 1 of 5)	AluSx|SINE|Alu	1502	NM_181493	3704		NM_033453	ENSG00000125877	ITPA	C20orf37|DEE35|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3	inosine triphosphatase	protein-coding
85087	chr16	33027471	33027830	+	0	NA	Intergenic	CpG	-142508	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
89176	chr16	88552651	88553350	+	0	NA	Intergenic	Intergenic	8983	NR_146877	400555		NM_001001682		ZC3H18-AS1	C16orf85|LINC00859	ZC3H18 antisense RNA 1 (head to head)	ncRNA
239150	chrY	11329251	11329350	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1092290	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
139656	chr2	226810871	226811430	+	0	NA	intron (NM_001349069, intron 3 of 8)	intron (NM_001349069, intron 3 of 8)	10991	NM_001349069	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
24094	chr1	235370971	235371330	+	0	NA	intron (NM_001079515, intron 1 of 16).2	AluSp|SINE|Alu	3723	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
237543	chrX	120457771	120458230	+	0	NA	intron (NM_002294, intron 1 of 8)	intron (NM_002294, intron 1 of 8)	11296	NM_002294	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
183569	chr5	80149871	80150230	+	0	NA	intron (NM_001174072, intron 9 of 11)	intron (NM_001174072, intron 9 of 11)	-66385	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
216182	chr8	11805571	11805800	+	0	NA	intron (NM_001287745, intron 2 of 8)	MER46C|DNA|TcMar-Tigger	-2258	NM_001287749	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
174979	chr4	49642321	49642630	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	655833	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
142913	chr20	18137421	18139330	+	0	NA	5' UTR (NM_020536, exon 1 of 11)	5' UTR (NM_020536, exon 1 of 11)	512	NM_001164811	100303755		NM_001164811	ENSG00000232838	PET117	CSRP2BP|MC4DN19	PET117 cytochrome c oxidase chaperone	protein-coding
204144	chr7	2378771	2378930	+	0	NA	intron (NM_001362791, intron 16 of 18)	intron (NM_001362791, intron 16 of 18)	24023	NM_001362791	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
33320	chr10	114970551	114970800	+	0	NA	intron (NM_139169, intron 5 of 7)	intron (NM_139169, intron 5 of 7)	-23982	NR_120677	102724589		NR_120677	ENSG00000236799	LINC02626	-	long intergenic non-protein coding RNA 2626	ncRNA
121414	chr19	46990771	46991530	+	0	NA	intron (NM_004491, intron 5 of 6)	intron (NM_004491, intron 5 of 6)	-28687	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
153835	chr22	29966651	29966850	+	0	NA	intron (NM_153051, intron 2 of 18)	(GT)n|Simple_repeat|Simple_repeat	-40299	NR_106876	102466742		NR_106876	ENSG00000275818	MIR6818	hsa-mir-6818	microRNA 6818	ncRNA
145724	chr20	45048251	45048830	+	0	NA	intron (NM_006282, intron 10 of 10)	AluSx|SINE|Alu	52587	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
86158	chr16	57758451	57759150	+	0	NA	non-coding (NR_134678, exon 19 of 19)	non-coding (NR_134678, exon 19 of 19)	13552	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
3616	chr1	16365851	16365950	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1342	NR_073501	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
65509	chr14	51895801	51896200	+	0	NA	intron (NM_053064, intron 2 of 3)	THE1B|LTR|ERVL-MaLR	22571	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
196252	chr6	42902601	42903000	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-11979	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
61501	chr13	52654051	52654300	+	0	NA	intron (NM_006704, intron 2 of 12)	intron (NM_006704, intron 2 of 12)	1339	NM_001130912	10910		NM_006704	ENSG00000165416	SUGT1	SGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein-coding
139906	chr2	230722421	230722700	+	0	NA	intron (NM_001130849, intron 1 of 8)	MIR|SINE|MIR	9012	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
12604	chr1	109072501	109072900	+	0	NA	intron (NM_005645, intron 2 of 3)	AluJb|SINE|Alu	3303	NM_005645	6884		NM_005645	ENSG00000197780	TAF13	MRT60|TAF(II)18|TAF2K|TAFII-18|TAFII18	TATA-box binding protein associated factor 13	protein-coding
184353	chr5	96983101	96983300	+	0	NA	intron (NM_175920, intron 2 of 17)	intron (NM_175920, intron 2 of 17)	24767	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
183680	chr5	80656471	80656630	+	0	NA	intron (NM_002439, intron 2 of 23)	intron (NM_002439, intron 2 of 23)	-1567	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
86851	chr16	67931771	67932080	+	0	NA	promoter-TSS (NM_001907)	promoter-TSS (NM_001907)	-63	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
226315	chr9	68996521	68996780	+	0	NA	intron (NM_001376039, intron 14 of 14)	intron (NM_001376039, intron 14 of 14)	17463	NM_002732	5568		NM_002732	ENSG00000165059	PRKACG	BDPLT19|KAPG|PKACg	protein kinase cAMP-activated catalytic subunit gamma	protein-coding
39763	chr11	61897571	61898230	+	0	NA	3' UTR (NM_013401, exon 10 of 10)	3' UTR (NM_013401, exon 10 of 10)	-6355	NM_021727	3995		NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
207456	chr7	44581421	44583230	+	0	NA	promoter-TSS (NM_001303060)	promoter-TSS (NM_001303060)	-30	NM_001303060	222068		NM_182547	ENSG00000158604	TMED4	ERS25|GMP25iso|HNLF|p24a3|p24alpha3	transmembrane p24 trafficking protein 4	protein-coding
128484	chr2	58063751	58064360	+	0	NA	intron (NM_001288836, intron 3 of 13)	Tigger1|DNA|TcMar-Tigger	17249	NM_006296	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
108575	chr18	75029271	75029830	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	175963	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
10919	chr1	84076301	84076700	+	0	NA	Intergenic	Intergenic	-1475	NM_002731	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
72238	chr15	30427021	30427280	+	0	NA	Intergenic	AluSp|SINE|Alu	-12890	NM_001282484	101059918		NM_001282484	ENSG00000186399	GOLGA8R	-	golgin A8 family member R	protein-coding
8745	chr1	42699601	42699800	+	0	NA	intron (NR_132737, intron 5 of 6)	AluJr4|SINE|Alu	16564	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
229603	chr9	123679451	123679750	+	0	NA	intron (NR_148208, intron 5 of 20)	intron (NR_148208, intron 5 of 20)	-193978	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
232743	chr9	136653701	136654100	+	0	NA	intron (NR_135132, intron 1 of 1)	CpG	-4956	NR_046367	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
192895	chr6	27507271	27507430	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-34232	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
186123	chr5	134145151	134145280	+	0	NA	intron (NM_201634, intron 9 of 9)	intron (NM_201634, intron 9 of 9)	21597	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
27333	chr10	30581701	30582430	+	0	NA	Intergenic	Intergenic	47688	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
4100	chr1	19241051	19241980	+	0	NA	TTS (NR_135114)	TTS (NR_135114)	10009	NM_001271429	23065		NM_015047	ENSG00000127463	EMC1	CAVIPMR|KIAA0090	ER membrane protein complex subunit 1	protein-coding
13071	chr1	111503271	111504250	+	0	NA	promoter-TSS (NM_000677)	promoter-TSS (NM_000677)	-127	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
751	chr1	1496551	1497630	+	0	NA	3' UTR (NM_001317238, exon 14 of 14)	3' UTR (NM_001317238, exon 14 of 14)	-15072	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
185874	chr5	132661251	132661730	+	0	NA	TTS (NM_002188)	TTS (NM_002188)	3317	NM_002188	3596		NM_002188	ENSG00000169194	IL13	IL-13|P600	interleukin 13	protein-coding
98825	chr17	48411671	48412180	+	0	NA	intron (NM_001075099, intron 1 of 12)	L1MC3|LINE|L1	18289	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
218047	chr8	38809001	38809200	+	0	NA	intron (NM_001352791, intron 1 of 11)	intron (NM_001352791, intron 1 of 11)	3650	NM_001352802	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
91762	chr17	6853621	6854350	+	0	NA	non-coding (NR_002710, exon 1 of 14)	non-coding (NR_002710, exon 1 of 14)	409	NR_002710	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
199385	chr6	116277071	116277530	+	0	NA	3' UTR (NM_003309, exon 1 of 1)	3' UTR (NM_003309, exon 1 of 1)	2630	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
72989	chr15	40597201	40597600	+	0	NA	intron (NM_144508, intron 1 of 25)	AluSz|SINE|Alu	3151	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
229953	chr9	126684021	126684280	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	70222	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
24968	chr10	2928351	2928530	+	0	NA	Intergenic	Intergenic	138493	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
37100	chr11	13279901	13280480	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	2400	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
130625	chr2	86034071	86034700	+	0	NA	intron (NM_015425, intron 27 of 33)	intron (NM_015425, intron 27 of 33)	71501	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
690	chr1	1390071	1390230	+	0	NA	intron (NR_135154, intron 8 of 12)	intron (NR_135154, intron 8 of 12)	8192	NM_001350497	81669		NM_030937	ENSG00000221978	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
37468	chr11	18327871	18328230	+	0	NA	intron (NM_001142307, intron 2 of 15)	AluSg|SINE|Alu	5483	NM_005316	2965		NM_005316	ENSG00000110768	GTF2H1	BTF2|P62|TFB1|TFIIH	general transcription factor IIH subunit 1	protein-coding
170971	chr3	194520871	194521030	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	33810	NR_033929	401106		NR_033929		ATP13A3-DT	LINC00884	ATP13A3 divergent transcript	ncRNA
146820	chr20	51388801	51389200	+	0	NA	3' UTR (NM_001258296, exon 11 of 11)	3' UTR (NM_001258296, exon 11 of 11)	63977	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
86026	chr16	57528421	57528950	+	0	NA	exon (NM_033212, exon 2 of 9)	exon (NM_033212, exon 2 of 9)	7886	NM_033212	92922		NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
56466	chr12	116066521	116067280	+	0	NA	intron (NM_015335, intron 4 of 30)	intron (NM_015335, intron 4 of 30)	81754	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
118244	chr19	35220551	35221050	+	0	NA	Intergenic	LTR45C|LTR|ERV1	7925	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
127590	chr2	42808401	42808600	+	0	NA	Intergenic	Intergenic	-15917	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
57263	chr12	121587471	121588080	+	0	NA	Intergenic	Intergenic	-6752	NM_032590	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
1858	chr1	6364671	6365650	+	0	NA	intron (NM_007274, intron 1 of 8)	L1ME1|LINE|L1	-4446	NM_181865	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
177672	chr4	121726301	121727280	+	0	NA	Intergenic	Intergenic	-29810	NM_001154	308		NM_001154	ENSG00000164111	ANXA5	ANX5|CPB-I|ENX2|HEL-S-7|PP4|RPRGL3|VAC-alph	annexin A5	protein-coding
238826	chrX	154436601	154438180	+	0	NA	TTS (NM_001183)	TTS (NM_001183)	236	NM_001493	2664		NM_001493	ENSG00000203879	GDI1	1A|GDIL|MRX41|MRX48|OPHN2|RABGD1A|RABGDIA|XAP-4|XLID41	GDP dissociation inhibitor 1	protein-coding
70360	chr14	101878451	101879380	+	0	NA	intron (NM_178587, intron 2 of 11)	intron (NM_178587, intron 2 of 11)	69052	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
154157	chr22	31281401	31282450	+	0	NA	3' UTR (NM_001135911, exon 5 of 5)	3' UTR (NM_001135911, exon 5 of 5)	10563	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
111329	chr19	3632301	3632700	+	0	NA	3' UTR (NM_012398, exon 18 of 18)	3' UTR (NM_012398, exon 18 of 18)	-5685	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
106053	chr18	9083951	9084550	+	0	NA	Intergenic	AluSp|SINE|Alu	-18449	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
232644	chr9	136473571	136473730	+	0	NA	intron (NM_014866, intron 3 of 31)	intron (NM_014866, intron 3 of 31)	-9360	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
229704	chr9	124770801	124772900	+	0	NA	promoter-TSS (NM_033334)	promoter-TSS (NM_033334)	-539	NM_001489	2649		NM_001489	ENSG00000148200	NR6A1	CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR	nuclear receptor subfamily 6 group A member 1	protein-coding
219751	chr8	81080101	81080780	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	31628	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
125369	chr2	11129201	11130850	+	0	NA	intron (NR_040080, intron 1 of 8)	intron (NR_040080, intron 1 of 8)	2151	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
36431	chr11	4607471	4608730	+	0	NA	5' UTR (NM_001304496, exon 1 of 6)	5' UTR (NM_001304496, exon 1 of 6)	131	NM_001304496	55128		NM_018073	ENSG00000167333	TRIM68	GC109|RNF137|SS-56|SS56	tripartite motif containing 68	protein-coding
165807	chr3	105816901	105817100	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	50591	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
54389	chr12	89882021	89882800	+	0	NA	Intergenic	Intergenic	-65283	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
52095	chr12	54122671	54122830	+	0	NA	TTS (NR_026655)	TTS (NR_026655)	-3321	NR_026656	400043		NR_026656	ENSG00000250742	LINC02381	HMS|lncEPAT	long intergenic non-protein coding RNA 2381	ncRNA
96354	chr17	40073901	40074550	+	0	NA	5' UTR (NM_001190919, exon 2 of 10)	5' UTR (NM_001190919, exon 2 of 10)	11260	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
20068	chr1	185695171	185695530	+	0	NA	Intergenic	Intergenic	-39041	NM_031935	83872		NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
21766	chr1	206916171	206916980	+	0	NA	intron (NM_001193338, intron 1 of 6)	L3|LINE|CR1	5366	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
58172	chr12	124965851	124966150	+	0	NA	intron (NM_032656, intron 12 of 26)	MIR|SINE|MIR	23131	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
203893	chr7	1488671	1489280	+	0	NA	intron (NM_001080453, intron 18 of 47)	intron (NM_001080453, intron 18 of 47)	15414	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
70395	chr14	101962851	101963380	+	0	NA	Intergenic	L2c|LINE|L2	-1458	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
66784	chr14	64688971	64689200	+	0	NA	Intergenic	Intergenic	-15339	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
82420	chr16	16295601	16296350	+	0	NA	Intergenic	Intergenic	-4184	NR_036145	100423006		NR_036145	ENSG00000266454	MIR3179-3	-	microRNA 3179-3	ncRNA
52060	chr12	54028071	54028480	+	0	NA	promoter-TSS (NM_004503)	promoter-TSS (NM_004503)	-165	NM_004503	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
162409	chr3	48240871	48242430	+	0	NA	intron (NM_016089, intron 1 of 3)	AluSg7|SINE|Alu	546	NM_016089	51385		NM_016089	ENSG00000164048	ZNF589	SZF1	zinc finger protein 589	protein-coding
156821	chr22	41935951	41936050	+	0	NA	Intergenic	AluSz|SINE|Alu	4219	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
195798	chr6	41051801	41052250	+	0	NA	Intergenic	L2a|LINE|L2	-1176	NM_006789	10930		NM_006789	ENSG00000124701	APOBEC2	ARCD1|ARP1	apolipoprotein B mRNA editing enzyme catalytic subunit 2	protein-coding
124465	chr19	58525321	58525580	+	0	NA	intron (NM_001316980, intron 1 of 2)	intron (NM_001316980, intron 1 of 2)	-5640	NM_001316979	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
55152	chr12	98745551	98746250	+	0	NA	intron (NM_001204068, intron 11 of 11)	CpG	100600	NM_181869	317		NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
24324	chr1	237736671	237737350	+	0	NA	intron (NM_001035, intron 79 of 104)	intron (NM_001035, intron 79 of 104)	-125165	NR_027247	100130331		NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
171291	chr3	195911801	195912130	+	0	NA	non-coding (NR_145450, exon 2 of 2)	non-coding (NR_145450, exon 2 of 2)	-3414	NM_001382273	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
125063	chr2	9624471	9624850	+	0	NA	intron (NM_006826, intron 2 of 5)	MER20|DNA|hAT-Charlie	6337	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
30144	chr10	74117701	74118300	+	0	NA	intron (NM_014000, intron 21 of 21)	intron (NM_014000, intron 21 of 21)	32828	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
236357	chrX	70451821	70453380	+	0	NA	TTS (NR_046586)	TTS (NR_046586)	308	NM_020730	1741		NM_020730	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|PPP1R82|SAP102|XLID90|XLMR	discs large MAGUK scaffold protein 3	protein-coding
61429	chr13	51824701	51826070	+	0	NA	intron (NM_001351003, intron 3 of 4)	L1MB5|LINE|L1	19792	NM_001351003	283521		NM_178515	ENSG00000281106	TMEM272	LINC00282|NCRNA00282	transmembrane protein 272	protein-coding
106359	chr18	13222501	13222700	+	0	NA	intron (NM_001378100, intron 1 of 6)	intron (NM_001378100, intron 1 of 6)	3840	NM_001378100	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
111023	chr19	3059621	3060700	+	0	NA	intron (NM_198969, intron 2 of 6)	intron (NM_198969, intron 2 of 6)	2335	NM_001130	166		NM_001130	ENSG00000104964	TLE5	AES|AES-1|AES-2|ESP1|GRG|GRG5|Grg-5	TLE family member 5, transcriptional modulator	protein-coding
65421	chr14	50859151	50860200	+	0	NA	Intergenic	Intergenic	-12378	NM_001206673	145447		NM_181533	ENSG00000131969	ABHD12B	BEM46L3|C14orf29|c14_5314	abhydrolase domain containing 12B	protein-coding
41083	chr11	65516051	65517400	+	0	NA	Intergenic	Intergenic	-8358	NM_001048218	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
131071	chr2	88691021	88692630	+	0	NA	exon (NM_144563, exon 1 of 9)	exon (NM_144563, exon 1 of 9)	152	NM_144563	22934		NM_144563	ENSG00000153574	RPIA	RPI|RPIAD	ribose 5-phosphate isomerase A	protein-coding
187002	chr5	139746021	139746700	+	0	NA	promoter-TSS (NR_105052)	promoter-TSS (NR_105052)	-137	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
8276	chr1	39903901	39904300	+	0	NA	Intergenic	Intergenic	-2183	NM_005376	4610		NM_005376	ENSG00000116990	MYCL	L-Myc|LMYC|MYCL1|bHLHe38	MYCL proto-oncogene, bHLH transcription factor	protein-coding
33090	chr10	110907301	110907700	+	0	NA	intron (NM_001243783, intron 1 of 2)	AluJo|SINE|Alu	9410	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
100121	chr17	58345801	58346330	+	0	NA	non-coding (NR_073470, exon 5 of 5)	non-coding (NR_073470, exon 5 of 5)	6136	NM_003168	6827		NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H|Supt4a	SPT4 homolog, DSIF elongation factor subunit	protein-coding
32758	chr10	104325051	104325730	+	0	NA	intron (NR_120622, intron 2 of 2)	intron (NR_120622, intron 2 of 2)	2026	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
27654	chr10	33010151	33011180	+	0	NA	Intergenic	Intergenic	-52435	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
205917	chr7	25614021	25614280	+	0	NA	intron (NR_157815, intron 3 of 4)	intron (NR_157815, intron 3 of 4)	48990	NR_157819	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
129352	chr2	68764271	68765050	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	-10250	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
35696	chr11	1920271	1920430	+	0	NA	intron (NM_001363561, intron 1 of 16)	intron (NM_001363561, intron 1 of 16)	647	NM_006757	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
135919	chr2	171574051	171574500	+	0	NA	Intergenic	Intergenic	51801	NM_024843	79901		NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
165586	chr3	101589401	101589600	+	0	NA	intron (NR_135228, intron 3 of 3)	AluSx|SINE|Alu	15320	NM_020357	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
174946	chr4	49139201	49139800	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	152858	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
197522	chr6	75893121	75893650	+	0	NA	intron (NR_160538, intron 29 of 32)	intron (NR_160538, intron 29 of 32)	144146	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
80952	chr16	3861771	3862630	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	17920	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
195766	chr6	40439951	40440450	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	61863	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
33065	chr10	110880201	110880730	+	0	NA	intron (NM_145341, intron 3 of 12)	intron (NM_145341, intron 3 of 12)	8537	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
44241	chr11	96567271	96567700	+	0	NA	Intergenic	Intergenic	59060	NR_135097	105369443		NR_135097	ENSG00000256684	LINC02737	-	long intergenic non-protein coding RNA 2737	ncRNA
160405	chr3	28235421	28235680	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-6069	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
119032	chr19	38940051	38940350	+	0	NA	Intergenic	HERVK9-int|LTR|ERVK	9246	NM_033363	6183		NM_021107	ENSG00000128626	MRPS12	MPR-S12|MT-RPS12|RPMS12|RPS12|RPSM12|uS12m	mitochondrial ribosomal protein S12	protein-coding
41276	chr11	65849151	65850100	+	0	NA	intron (NM_152760, intron 2 of 12)	intron (NM_152760, intron 2 of 12)	8555	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
15526	chr1	150514051	150514450	+	0	NA	TTS (NM_001202858)	TTS (NM_001202858)	-1507	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
84544	chr16	30554701	30556280	+	0	NA	exon (NM_033410, exon 3 of 3)	exon (NM_033410, exon 3 of 3)	2884	NM_033410	92595		NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
180051	chr5	1076701	1076900	+	0	NA	exon (NM_006598, exon 13 of 24).2	exon (NM_006598, exon 13 of 24).2	-13826	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
122338	chr19	49165801	49166000	+	0	NA	intron (NM_001321285, intron 2 of 19)	intron (NM_001321285, intron 2 of 19)	8108	NM_001321283	54795		NM_017636	ENSG00000130529	TRPM4	EKVP6|LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
75004	chr15	63983171	63983430	+	0	NA	intron (NR_169523, intron 3 of 11)	intron (NR_169523, intron 3 of 11)	55026	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
49914	chr12	39616721	39617280	+	0	NA	exon (NM_005164, exon 2 of 10)	exon (NM_005164, exon 2 of 10)	2803	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
190899	chr6	2775071	2775230	+	0	NA	intron (NM_020135, intron 3 of 6)	MIR|SINE|MIR	-4774	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
64868	chr14	35299201	35299900	+	0	NA	intron (NM_001282232, intron 1 of 6)	AluSx1|SINE|Alu	7168	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
93899	chr17	21246701	21247000	+	0	NA	intron (NM_152914, intron 1 of 2)	L2a|LINE|L2	6560	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
18503	chr1	161741201	161741680	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8346	NM_007240	11266		NM_007240	ENSG00000081721	DUSP12	DUSP1|YVH1	dual specificity phosphatase 12	protein-coding
141479	chr2	241081751	241082050	+	0	NA	intron (NM_001080437, intron 28 of 31)	intron (NM_001080437, intron 28 of 31)	20387	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
63618	chr14	20628721	20629700	+	0	NA	Intergenic	L1MC1|LINE|L1	12481	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
7787	chr1	36236001	36236700	+	0	NA	intron (NM_001321471, intron 2 of 12)	MER3|DNA|hAT-Charlie	11907	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
217375	chr8	28080801	28081080	+	0	NA	intron (NM_001010906, intron 1 of 18)	MIRc|SINE|MIR	2996	NM_001010906	389643		NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC|SLIPGC	nuclear GTPase, germinal center associated	protein-coding
174690	chr4	42151171	42151530	+	0	NA	intron (NM_207406, intron 2 of 5)	CpG	1305	NM_001159547	389206		NM_207406	ENSG00000188848	BEND4	CCDC4	BEN domain containing 4	protein-coding
116445	chr19	18046371	18046530	+	0	NA	Intergenic	L2a|LINE|L2	38280	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
124572	chr2	670571	670930	+	0	NA	intron (NM_001352680, intron 4 of 5)	intron (NM_001352680, intron 4 of 5)	5954	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
96633	chr17	40596051	40597050	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-31078	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
149121	chr21	17612301	17613680	+	0	NA	promoter-TSS (NM_006806).2	promoter-TSS (NM_006806).2	-89	NM_001130914	10950		NM_006806	ENSG00000154640	BTG3	ANA|ANA/BTG3|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding
217840	chr8	37704401	37704600	+	0	NA	Intergenic	Intergenic	8718	NM_025069	80139		NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
112058	chr19	5148901	5149300	+	0	NA	intron (NM_015015, intron 21 of 22)	intron (NM_015015, intron 21 of 22)	179987	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
64161	chr14	22915371	22915530	+	0	NA	intron (NM_001352764, intron 1 of 14)	AluSp|SINE|Alu	3699	NM_001352765	55147		NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding
218229	chr8	42044501	42045400	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-6800	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
159120	chr3	12607121	12607780	+	0	NA	intron (NR_148942, intron 5 of 16)	AluJb|SINE|Alu	-46451	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
219939	chr8	87425751	87425860	+	0	NA	Intergenic	L1PA2|LINE|L1	448210	NM_152418	138009		NM_152418	ENSG00000176566	DCAF4L2	WDR21C	DDB1 and CUL4 associated factor 4 like 2	protein-coding
84052	chr16	29578401	29579900	+	0	NA	intron (NR_135305, intron 1 of 13)	intron (NR_135305, intron 1 of 13)	15942	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
69104	chr14	92441671	92441830	+	0	NA	intron (NM_153647, intron 5 of 17)	L2b|LINE|L2	-72031	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
38167	chr11	36291071	36291430	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-1826	NM_001307937	29099		NM_014186	ENSG00000110442	COMMD9	C11orf55|HSPC166|LINC00610	COMM domain containing 9	protein-coding
132629	chr2	108624801	108625000	+	0	NA	intron (NM_001371500, intron 1 of 2)	AluSx|SINE|Alu	3649	NM_001371500	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
202627	chr6	158748551	158749780	+	0	NA	intron (NM_001318745, intron 9 of 14)	AluSx|SINE|Alu	15588	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
235012	chrX	39912651	39912750	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	75139	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
211344	chr7	104946321	104947230	+	0	NA	Intergenic	MIR|SINE|MIR	-20130	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
170308	chr3	184341271	184341430	+	0	NA	intron (NM_001366133, intron 1 of 4)	GA-rich|Low_complexity|Low_complexity	2517	NM_001366133	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
194397	chr6	33003721	33003980	+	0	NA	TTS (NM_002119)	TTS (NM_002119)	5741	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
90487	chr17	1398971	1400750	+	0	NA	intron (NR_024058, intron 1 of 6)	CpG	362	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
40126	chr11	62827401	62827800	+	0	NA	exon (NM_001330294, exon 3 of 11)	exon (NM_001330294, exon 3 of 11)	4451	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
58968	chr13	19854201	19854400	+	0	NA	intron (NM_001039649, intron 2 of 4)	AluSc|SINE|Alu	9336	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
183148	chr5	75049701	75050830	+	0	NA	intron (NM_001366737, intron 2 of 3)	intron (NM_001366737, intron 2 of 3)	2293	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
94176	chr17	28516101	28516500	+	0	NA	intron (NM_001369369, intron 1 of 8)	intron (NM_001369369, intron 1 of 8)	-7641	NM_003593	8456		NM_003593	ENSG00000109101	FOXN1	FKHL20|RONU|TIDAND|TLIND|WHN	forkhead box N1	protein-coding
26103	chr10	13312111	13312330	+	0	NA	Intergenic	AluSp|SINE|Alu	-12090	NM_001323083	5264		NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
105339	chr17	82615421	82616150	+	0	NA	3' UTR (NM_019613, exon 10 of 10)	3' UTR (NM_019613, exon 10 of 10)	32659	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
95149	chr17	35076771	35076930	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	12376	NR_037713	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
214295	chr7	149092651	149092950	+	0	NA	Intergenic	AluYf1|SINE|Alu	-2082	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
91141	chr17	3750621	3751480	+	0	NA	intron (NM_002208, intron 15 of 30)	intron (NM_002208, intron 15 of 30)	27147	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
82321	chr16	15703401	15703850	+	0	NA	3' UTR (NM_001040113, exon 43 of 43)	3' UTR (NM_001040113, exon 43 of 43)	53380	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
235337	chrX	44012701	44012980	+	0	NA	Intergenic	Intergenic	-39450	NM_000266	4693		NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	norrin cystine knot growth factor NDP	protein-coding
10612	chr1	67723851	67723950	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	38699	NM_001199741	1647		NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
75246	chr15	64897001	64897200	+	0	NA	Intergenic	MIRb|SINE|MIR	-14802	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
74279	chr15	57587151	57587250	+	0	NA	Intergenic	Intergenic	-4704	NM_001018091	145781		NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GCOM1, MYZAP-POLR2M combined locus	protein-coding
116363	chr19	17876801	17877250	+	0	NA	intron (NM_000453, intron 5 of 14)	AluSp|SINE|Alu	5080	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
70800	chr14	103539201	103540200	+	0	NA	Intergenic	Intergenic	10504	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
2970	chr1	11936001	11936400	+	0	NA	intron (NM_000302, intron 1 of 18)	MIR1_Amn|SINE|MIR	1483	NM_001316320	5351		NM_000302	ENSG00000083444	PLOD1	EDS6|EDSKCL1|LH|LH1|LLH|PLOD	procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	protein-coding
91848	chr17	7212001	7212400	+	0	NA	intron (NR_135527, intron 3 of 20)	intron (NR_135527, intron 3 of 20)	-4925	NM_001270447	37		NM_000018	ENSG00000072778	ACADVL	ACAD6|LCACD|VLCAD	acyl-CoA dehydrogenase very long chain	protein-coding
227676	chr9	92990401	92990600	+	0	NA	intron (NM_001369951, intron 3 of 17)	L1MA5A|LINE|L1	16031	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
127170	chr2	38301551	38301850	+	0	NA	intron (NM_001135673, intron 9 of 12)	L1MA3|LINE|L1	74830	NM_001330460	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
36330	chr11	3877521	3877780	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	21588	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
121558	chr19	47259021	47259530	+	0	NA	intron (NM_015603, intron 3 of 11)	L2b|LINE|L2	2750	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
135080	chr2	156663851	156664180	+	0	NA	Intergenic	Intergenic	227636	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
197277	chr6	70706301	70706800	+	0	NA	intron (NM_001281440, intron 1 of 10)	intron (NM_001281440, intron 1 of 10)	38020	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
140886	chr2	237627121	237628180	+	0	NA	promoter-TSS (NM_001137550)	promoter-TSS (NM_001137550)	63	NM_001137550	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
224024	chr9	3240701	3241000	+	0	NA	intron (NM_001377999, intron 15 of 17)	intron (NM_001377999, intron 15 of 17)	59261	NR_121585	101929247		NR_121585	ENSG00000236511	LINC01231	-	long intergenic non-protein coding RNA 1231	ncRNA
70461	chr14	102061421	102061680	+	0	NA	Intergenic	AluY|SINE|Alu	25494	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
69921	chr14	99520651	99520750	+	0	NA	intron (NM_001144995, intron 3 of 5)	intron (NM_001144995, intron 3 of 5)	39291	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
119317	chr19	39891471	39892180	+	0	NA	exon (NM_003890, exon 15 of 29)	exon (NM_003890, exon 15 of 29)	42801	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
159397	chr3	13450301	13450500	+	0	NA	Intergenic	AluSq|SINE|Alu	29653	NR_046690	100874101		NR_046690	ENSG00000244502	HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
24172	chr1	235876371	235877150	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	6948	NM_001301365	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
181169	chr5	39059571	39059730	+	0	NA	intron (NM_001285439, intron 2 of 38)	intron (NM_001285439, intron 2 of 38)	14749	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
19838	chr1	182873601	182873800	+	0	NA	intron (NM_001357, intron 15 of 27)	L1MC3|LINE|L1	-34109	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
155489	chr22	38508271	38508630	+	0	NA	Intergenic	L2a|LINE|L2	-2139	NM_001098504	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
86318	chr16	63120451	63120550	+	0	NA	Intergenic	L1PA3|LINE|L1	-1084062	NM_001796	1006		NM_001796	ENSG00000150394	CDH8	Nbla04261	cadherin 8	protein-coding
22541	chr1	222454921	222455550	+	0	NA	Intergenic	Intergenic	92869	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
236185	chrX	65609971	65610300	+	0	NA	Intergenic	L1MB2|LINE|L1	-57519	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
18605	chr1	165696251	165696350	+	0	NA	intron (NM_000696, intron 1 of 10)	Charlie4z|DNA|hAT-Charlie	2262	NM_001365774	223		NM_000696	ENSG00000143149	ALDH9A1	ALDH4|ALDH7|ALDH9|E3|TMABA-DH|TMABADH|TMABALDH	aldehyde dehydrogenase 9 family member A1	protein-coding
124343	chr19	58312021	58312450	+	0	NA	non-coding (NR_144447, exon 6 of 7)	non-coding (NR_144447, exon 6 of 7)	6861	NR_144445	105372481		NM_001396080	ENSG00000142396	ERVK3-1	-	endogenous retrovirus group K3 member 1	protein-coding
194120	chr6	31962401	31963450	+	0	NA	intron (NM_006929, intron 12 of 27).3	intron (NM_006929, intron 12 of 27).3	3750	NM_006929	6499		NM_006929	ENSG00000204351	SKIC2	170A|DDX13|HLP|SKI2|SKI2W|SKIV2|SKIV2L|SKIV2L1|THES2	SKI2 subunit of superkiller complex	protein-coding
96535	chr17	40352771	40353530	+	0	NA	intron (NM_000964, intron 6 of 8)	intron (NM_000964, intron 6 of 8)	-10014	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
61737	chr13	74136201	74137200	+	0	NA	Intergenic	Intergenic	-2771	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
124227	chr19	57298271	57298830	+	0	NA	Intergenic	AluSx|SINE|Alu	18065	NM_006635	10794		NM_006635	ENSG00000197714	ZNF460	HZF8|ZNF272	zinc finger protein 460	protein-coding
102396	chr17	75587321	75588600	+	0	NA	promoter-TSS (NM_001309242)	promoter-TSS (NM_001309242)	-98	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
49066	chr12	14412851	14413350	+	0	NA	intron (NM_181352, intron 1 of 14)	L1MB8|LINE|L1	27819	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
218768	chr8	58969521	58969780	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	149497	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
19131	chr1	171528171	171528530	+	0	NA	intron (NM_015172, intron 11 of 33)	AluY|SINE|Alu	42820	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
152887	chr22	22687621	22687900	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	41448	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
87999	chr16	80744751	80745130	+	0	NA	intron (NM_152342, intron 1 of 6)	intron (NM_152342, intron 1 of 6)	59658	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
182706	chr5	68232521	68232780	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	16894	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
28389	chr10	47461321	47461780	+	0	NA	Intergenic	CpG	22565	NM_001040084	653145		NM_001040084	ENSG00000265190	ANXA8	ANX8|CH17-360D5.2	annexin A8	protein-coding
213647	chr7	139750671	139751230	+	0	NA	intron (NM_022740, intron 1 of 14)	L4_B_Mam|LINE|RTE-X	27048	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
86582	chr16	67238501	67239550	+	0	NA	intron (NM_001318202, intron 2 of 23)	intron (NM_001318202, intron 2 of 23)	8456	NM_001318202	29109		NM_013241	ENSG00000135723	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
135201	chr2	158968521	158969330	+	0	NA	intron (NM_001350064, intron 1 of 26)	CpG	285	NR_146421	85461		NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
45414	chr11	118356471	118356630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3050	NM_001204077	9354		NM_004788	ENSG00000110344	UBE4A	E4|NEDHMS|UBOX2|UFD2	ubiquitination factor E4A	protein-coding
109886	chr19	1257551	1258400	+	0	NA	3' UTR (NM_177401, exon 8 of 8)	3' UTR (NM_177401, exon 8 of 8)	9422	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
122523	chr19	49622471	49622900	+	0	NA	intron (NM_020719, intron 11 of 13)	AluY|SINE|Alu	17458	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
239509	chrY	56769171	56770300	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-184520	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
109507	chr19	834001	834630	+	0	NA	Intergenic	L1MB5|LINE|L1	6478	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
234738	chrX	21973901	21974480	+	0	NA	intron (NM_004595, intron 4 of 10)	intron (NM_004595, intron 4 of 10)	33481	NM_004595	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
187381	chr5	141872151	141872250	+	0	NA	intron (NM_032420, intron 1 of 4)	intron (NM_032420, intron 1 of 4)	-2573	NM_001278613	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
2618	chr1	10185001	10185200	+	0	NA	Intergenic	AluJb|SINE|Alu	-25470	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
124049	chr19	55578571	55578980	+	0	NA	exon (NM_152600, exon 2 of 2)	exon (NM_152600, exon 2 of 2)	2073	NM_152600	163033		NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding
154385	chr22	35231121	35231750	+	0	NA	promoter-TSS (NR_126356)	promoter-TSS (NR_126356)	-379	NR_126356	104310353		NR_126356	ENSG00000293220	LINC01399	-	long intergenic non-protein coding RNA 1399	ncRNA
203771	chr7	1225321	1226200	+	0	NA	Intergenic	Intergenic	-7112	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
216962	chr8	23014471	23014980	+	0	NA	exon (NM_001374791, exon 8 of 10)	exon (NM_001374791, exon 8 of 10)	15177	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
102368	chr17	75523001	75523350	+	0	NA	intron (NM_207346, intron 8 of 10)	AluSx|SINE|Alu	-2522	NM_001031803	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
64308	chr14	23568751	23569250	+	0	NA	TTS (NR_110555)	TTS (NR_110555)	-1209	NR_148937	8906		NM_003917	ENSG00000213983	AP1G2	G2AD	adaptor related protein complex 1 subunit gamma 2	protein-coding
136711	chr2	181162951	181164180	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	39728	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
233258	chr9	137278421	137278950	+	0	NA	5' UTR (NM_017723, exon 2 of 2)	5' UTR (NM_017723, exon 2 of 2)	959	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
110400	chr19	1947821	1948300	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	6489	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
29783	chr10	72274601	72275300	+	0	NA	exon (NM_019058, exon 3 of 3)	exon (NM_019058, exon 3 of 3)	1026	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
152506	chr22	20941701	20941900	+	0	NA	intron (NR_156180, intron 2 of 3)	AluSg7|SINE|Alu	-15292	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
7141	chr1	32208821	32209450	+	0	NA	promoter-TSS (NM_001099434)	promoter-TSS (NM_001099434)	41	NM_001099434	149069		NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
71997	chr15	25850111	25851280	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	-1870	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
42123	chr11	67617271	67617430	+	0	NA	Intergenic	L1MA7|LINE|L1	-1686	NR_033791	390213		NR_033791		DOC2GP	-	double C2 domain gamma, pseudogene	pseudo
43747	chr11	86117301	86117950	+	0	NA	Intergenic	Intergenic	-47765	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
58324	chr12	131224351	131224800	+	0	NA	Intergenic	Intergenic	59564	NR_026670	116437		NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
218796	chr8	59022151	59022450	+	0	NA	intron (NM_014729, intron 1 of 8)	Tigger19b|DNA|TcMar-Tigger	96847	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
77844	chr15	88654451	88655150	+	0	NA	intron (NM_001303233, intron 3 of 3)	intron (NM_001303233, intron 3 of 3)	15784	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
17697	chr1	158149221	158150280	+	0	NA	Intergenic	CpG	-9110	NR_033946	646268		NR_033946	ENSG00000231666	LINC01704	-	long intergenic non-protein coding RNA 1704	ncRNA
124192	chr19	56301301	56301500	+	0	NA	intron (NM_001354658, intron 8 of 10)	MER41B|LTR|ERV1	13164	NM_001322066	79149		NM_024303	ENSG00000131848	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
176878	chr4	102734321	102734900	+	0	NA	intron (NM_005908, intron 1 of 16)	intron (NM_005908, intron 1 of 16)	26358	NM_005908	4126		NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
3122	chr1	12386021	12386800	+	0	NA	intron (NM_018156, intron 59 of 68)	intron (NM_018156, intron 59 of 68)	-120836	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
185691	chr5	131902371	131902680	+	0	NA	intron (NM_001303622, intron 8 of 12)	MSTA|LTR|ERVL-MaLR	43138	NM_001303622	728637		NM_001278059	ENSG00000239642	MEIKIN	SPO13	meiotic kinetochore factor	protein-coding
119084	chr19	39237671	39238300	+	0	NA	Intergenic	Intergenic	7021	NM_172139	282617		NM_172139	ENSG00000197110	IFNL3	IFN-lambda-3|IFN-lambda-4|IL-28B|IL-28C|IL28B|IL28C	interferon lambda 3	protein-coding
8457	chr1	40700021	40700430	+	0	NA	intron (NM_001142590, intron 2 of 14)	MIRb|SINE|MIR	-7964	NR_024567	100130557		NR_024567		NFYC-AS1	0808y08y	NFYC antisense RNA 1	ncRNA
42788	chr11	72779821	72780250	+	0	NA	intron (NM_006645, intron 2 of 6)	intron (NM_006645, intron 2 of 6)	-3495	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
224942	chr9	33032961	33034130	+	0	NA	intron (NM_001314039, intron 4 of 7)	AluJb|SINE|Alu	8272	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
46813	chr11	130388551	130390100	+	0	NA	intron (NR_148980, intron 2 of 6)	intron (NR_148980, intron 2 of 6)	39284	NM_007037	11095		NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif 8	protein-coding
116069	chr19	17234001	17234200	+	0	NA	intron (NM_005234, intron 3 of 3)	AluSg|SINE|Alu	7874	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
33509	chr10	119174971	119175530	+	0	NA	intron (NR_126102, intron 1 of 5)	intron (NR_126102, intron 1 of 5)	3562	NR_126106	10935		NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PPPCD|PRO1748|SCAR32|SP-22|prx-III	peroxiredoxin 3	protein-coding
140507	chr2	233206351	233206830	+	0	NA	intron (NM_001017915, intron 26 of 26).2	intron (NM_001017915, intron 26 of 26).2	-44981	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
64742	chr14	34547481	34548000	+	0	NA	TTS (NR_004400).7	TTS (NR_004400).7	1026	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
11115	chr1	86392871	86393230	+	0	NA	intron (NM_020729, intron 1 of 17)	intron (NM_020729, intron 1 of 17)	3011	NM_001366784	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
105033	chr17	82056401	82056680	+	0	NA	TTS (NM_022156)	TTS (NM_022156)	4642	NM_212492	2873		NM_004127	ENSG00000169727	GPS1	COPS1|CSN1|SGN1	G protein pathway suppressor 1	protein-coding
37527	chr11	18630121	18630380	+	0	NA	intron (NM_194285, intron 1 of 5)	AluSc|SINE|Alu	4092	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
104435	chr17	81081701	81082100	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	-1089	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
29821	chr10	72316121	72316380	+	0	NA	Intergenic	MIRb|SINE|MIR	38669	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
219287	chr8	67746171	67746330	+	0	NA	5' UTR (NM_020361, exon 1 of 11)	5' UTR (NM_020361, exon 1 of 11)	110	NM_020361	57094		NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
129250	chr2	68370521	68370780	+	0	NA	intron (NM_002664, intron 1 of 8)	AluSz|SINE|Alu	5368	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
164993	chr3	71345971	71346200	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-41314	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
199157	chr6	111735321	111735700	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	23621	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
206681	chr7	36404721	36405450	+	0	NA	intron (NM_018685, intron 3 of 23)	Tigger3a|DNA|TcMar-Tigger	-14728	NM_001100425	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
56855	chr12	120258021	120258780	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	7330	NM_002859	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
166440	chr3	113911021	113911280	+	0	NA	intron (NM_017577, intron 9 of 17)	intron (NM_017577, intron 9 of 17)	13650	NM_001172105	54762		NM_017577	ENSG00000178075	GRAMD1C	-	GRAM domain containing 1C	protein-coding
31053	chr10	88979271	88979430	+	0	NA	intron (NM_001320855, intron 1 of 8)	intron (NM_001320855, intron 1 of 8)	-11448	NR_028035	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
15082	chr1	148512801	148513150	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	-29673	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
150928	chr21	44246171	44246530	+	0	NA	TTS (NM_013369)	TTS (NM_013369)	-4463	NR_135514	105372833		NR_135514	ENSG00000232010	DNMT3L-AS1	-	DNMT3L antisense RNA 1	ncRNA
29128	chr10	68524051	68524780	+	0	NA	intron (NM_001324314, intron 1 of 9)	AluSc|SINE|Alu	3108	NM_001324313	8034		NM_152707	ENSG00000122912	SLC25A16	D10S105E|GDA|GDC|HGT.1|ML7|hGP|hML7	solute carrier family 25 member 16	protein-coding
3017	chr1	12085301	12085500	+	0	NA	intron (NM_001243, intron 2 of 14)	AluSq2|SINE|Alu	22023	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
65320	chr14	50107451	50107550	+	0	NA	Intergenic	AluSx|SINE|Alu	-2457	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
147064	chr20	53711451	53711750	+	0	NA	Intergenic	L2a|LINE|L2	103246	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
216616	chr8	22088651	22090680	+	0	NA	intron (NM_022749, intron 1 of 16)	CpG	511	NR_148727	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
30088	chr10	73913021	73913350	+	0	NA	intron (NM_002658, intron 5 of 10)	intron (NM_002658, intron 5 of 10)	2053	NM_001319191	5328		NM_002658	ENSG00000122861	PLAU	ATF|BDPLT5|QPD|UPA|URK|u-PA	plasminogen activator, urokinase	protein-coding
31786	chr10	98266071	98266730	+	0	NA	intron (NM_032211, intron 1 of 14)	intron (NM_032211, intron 1 of 14)	1794	NM_032211	84171		NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
161826	chr3	45631371	45631880	+	0	NA	intron (NM_014240, intron 1 of 7)	intron (NM_014240, intron 1 of 7)	36874	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
116110	chr19	17302651	17303730	+	0	NA	intron (NM_001382342, intron 1 of 2)	CpG	235	NM_024527	79575		NM_024527	ENSG00000127220	ABHD8	-	abhydrolase domain containing 8	protein-coding
156190	chr22	40265621	40266100	+	0	NA	exon (NM_001162501, exon 5 of 23)	exon (NM_001162501, exon 5 of 23)	-80640	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
99544	chr17	50366351	50366850	+	0	NA	Intergenic	Intergenic	6584	NM_016504	51264		NM_016504	ENSG00000108826	MRPL27	L27mt|bL27m	mitochondrial ribosomal protein L27	protein-coding
166054	chr3	108821271	108821650	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-1326	NM_001317747	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
13363	chr1	113875521	113876000	+	0	NA	intron (NR_037864, intron 3 of 4)	intron (NR_037864, intron 3 of 4)	-4001	NM_001193431	26191		NM_012411	ENSG00000134242	PTPN22	LYP|LYP1|LYP2|PEP|PTPN22.5|PTPN22.6|PTPN8	protein tyrosine phosphatase non-receptor type 22	protein-coding
55312	chr12	103884271	103884580	+	0	NA	intron (NR_027249, intron 7 of 15)	intron (NR_027249, intron 7 of 15)	-43191	NM_001031701	51559		NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
189342	chr5	172182201	172182630	+	0	NA	intron (NM_005990, intron 1 of 18)	AluJb|SINE|Alu	5809	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
98000	chr17	45304701	45305230	+	0	NA	intron (NM_003954, intron 1 of 15)	MIRb|SINE|MIR	12055	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
99052	chr17	48910751	48910850	+	0	NA	intron (NM_023079, intron 1 of 6)	intron (NM_023079, intron 1 of 6)	-1817	NR_135674	105371814		NR_135674	ENSG00000293025	LOC105371814	-	uncharacterized LOC105371814	ncRNA
212291	chr7	123762751	123763400	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14072	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
78746	chr15	98865901	98866730	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	81889	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
139035	chr2	218482801	218483000	+	0	NA	intron (NM_020935, intron 16 of 25)	intron (NM_020935, intron 16 of 25)	63777	NM_007127	7429		NM_007127	ENSG00000127831	VIL1	D2S1471|VIL	villin 1	protein-coding
93623	chr17	19159251	19159830	+	0	NA	TTS (NM_001353418)	TTS (NM_001353418)	3084	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
55588	chr12	106477471	106477630	+	0	NA	intron (NM_018082, intron 23 of 27)	L1PA2|LINE|L1	-105454	NM_213594	5992		NM_002920	ENSG00000111783	RFX4	NYD-SP10	regulatory factor X4	protein-coding
19720	chr1	181101201	181101680	+	0	NA	Intergenic	Intergenic	12740	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
138691	chr2	213087221	213087480	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	63087	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
146191	chr20	48765521	48766050	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	62214	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
181237	chr5	39194651	39195400	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	24538	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
151067	chr21	44764551	44764650	+	0	NA	Intergenic	Intergenic	37220	NM_182688	7327		NM_003343	ENSG00000184787	UBE2G2	UBC7	ubiquitin conjugating enzyme E2 G2	protein-coding
80659	chr16	3010771	3011450	+	0	NA	Intergenic	Intergenic	-1813	NM_020982	9080		NM_020982	ENSG00000213937	CLDN9	DFNB116	claudin 9	protein-coding
82091	chr16	14309121	14309780	+	0	NA	TTS (NR_029854)	TTS (NR_029854)	165	NR_029854	100126355		NR_029854	ENSG00000199130	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a|mir-365a	microRNA 365a	ncRNA
34988	chr11	515921	516180	+	0	NA	Intergenic	L1MD|LINE|L1	-8808	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
157706	chr22	46378421	46378680	+	0	NA	intron (NM_001378328, intron 23 of 34)	intron (NM_001378328, intron 23 of 34)	42836	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
136442	chr2	176817001	176817440	+	0	NA	Intergenic	Intergenic	179466	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
237372	chrX	119067051	119067350	+	0	NA	Intergenic	Intergenic	83379	NM_020721	57481		NM_020721	ENSG00000250423	KIAA1210	-	KIAA1210	protein-coding
38809	chr11	47288621	47289280	+	0	NA	intron (NM_001376662, intron 15 of 30)	intron (NM_001376662, intron 15 of 30)	-16840	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
76370	chr15	74600551	74600650	+	0	NA	Intergenic	Intergenic	-7772	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
172344	chr4	1709121	1709930	+	0	NA	intron (NM_001306075, intron 1 of 6)	LTR14|LTR|ERVK	2794	NM_001306075	7884		NM_006527	ENSG00000163950	SLBP	HBP	stem-loop histone mRNA binding protein	protein-coding
27488	chr10	32189501	32189700	+	0	NA	Intergenic	Intergenic	-133175	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
50476	chr12	47775001	47775900	+	0	NA	intron (NM_017842, intron 1 of 2)	intron (NM_017842, intron 1 of 2)	2212	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
227649	chr9	92961701	92962700	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	-1761	NM_001286993	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
187887	chr5	148808871	148809950	+	0	NA	Intergenic	Intergenic	-17201	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
201460	chr6	148736751	148737850	+	0	NA	Intergenic	L2a|LINE|L2	-9730	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
174524	chr4	40123301	40123830	+	0	NA	intron (NM_001318359, intron 11 of 18)	AluJr|SINE|Alu	-66366	NR_027277	344967		NR_027277	ENSG00000293349	LOC344967	ACOT7L|BACHL	acyl-CoA thioesterase 7 pseudogene	pseudo
229447	chr9	121499451	121499850	+	0	NA	promoter-TSS (NM_001382587)	promoter-TSS (NM_001382587)	194	NR_168459	2681		NM_001382584	ENSG00000204136	GGTA1	GGTA|GGTA1P|GLYT2|a1/3GTP	glycoprotein alpha-galactosyltransferase 1 (inactive)	protein-coding
201791	chr6	149983751	149983850	+	0	NA	Intergenic	Intergenic	19857	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
195232	chr6	36203621	36204530	+	0	NA	intron (NM_015695, intron 2 of 12)	intron (NM_015695, intron 2 of 12)	7331	NM_015695	27154		NM_015695	ENSG00000096070	BRPF3	-	bromodomain and PHD finger containing 3	protein-coding
215015	chr7	152391021	152391330	+	0	NA	intron (NM_170606, intron 1 of 58)	intron (NM_170606, intron 1 of 58)	44828	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
29056	chr10	67878201	67878600	+	0	NA	Intergenic	AluJb|SINE|Alu	-6256	NM_012238	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
214413	chr7	149825071	149825630	+	0	NA	non-coding (NR_163594, exon 92 of 103)	non-coding (NR_163594, exon 92 of 103)	-13025	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
11534	chr1	90998521	90998780	+	0	NA	intron (NM_032186, intron 1 of 3)	L1P1|LINE|L1	22858	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
34239	chr10	130141551	130142050	+	0	NA	intron (NM_001199868, intron 1 of 11)	L1ME3|LINE|L1	5391	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
62631	chr13	100996751	100996850	+	0	NA	intron (NR_047687, intron 2 of 7)	(AG)n|Simple_repeat|Simple_repeat	-52436	NR_047015	100874161		NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA
26078	chr10	13106421	13107030	+	0	NA	intron (NM_021980, intron 1 of 13)	intron (NM_021980, intron 1 of 13)	6562	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
120041	chr19	41985071	41985430	+	0	NA	intron (NM_001256213, intron 7 of 22)	intron (NM_001256213, intron 7 of 22)	8217	NM_001256213	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
7013	chr1	31907301	31907500	+	0	NA	3' UTR (NM_001195101, exon 5 of 5)	3' UTR (NM_001195101, exon 5 of 5)	30418	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
85630	chr16	54933251	54933550	+	0	NA	exon (NM_001252197, exon 3 of 3)	exon (NM_001252197, exon 3 of 3)	2201	NM_001252197	10265		NM_005853	ENSG00000176842	IRX5	HMMS|IRX-2a|IRXB2	iroquois homeobox 5	protein-coding
142380	chr20	3805521	3806280	+	0	NA	non-coding (NR_136335, exon 17 of 17)	non-coding (NR_136335, exon 17 of 17)	-2594	NR_109859	101929125		NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
194674	chr6	33670071	33671030	+	0	NA	exon (NM_002224, exon 19 of 58)	exon (NM_002224, exon 19 of 58)	-27578	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
28187	chr10	44385001	44385250	+	0	NA	promoter-TSS (NM_000609)	promoter-TSS (NM_000609)	-28	NM_000609	6387		NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1	C-X-C motif chemokine ligand 12	protein-coding
119536	chr19	40582251	40582550	+	0	NA	exon (NM_138392, exon 10 of 18)	exon (NM_138392, exon 10 of 18)	5527	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
147408	chr20	58852571	58853130	+	0	NA	promoter-TSS (NM_001077490)	promoter-TSS (NM_001077490)	-131	NM_080425	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
181010	chr5	35850821	35851080	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-5941	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
63696	chr14	21096021	21096400	+	0	NA	intron (NM_001102454, intron 1 of 4)	intron (NM_001102454, intron 1 of 4)	2445	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
46449	chr11	128140321	128140580	+	0	NA	Intergenic	L1PA4|LINE|L1	-68316	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
176657	chr4	99965301	99966100	+	0	NA	intron (NR_125923, intron 1 of 3)	intron (NR_125923, intron 1 of 3)	15206	NR_125923	256880		NR_002799		H2AZ1-DT	-	H2AZ1 divergent transcript	ncRNA
197026	chr6	53335071	53336250	+	0	NA	non-coding (NR_046241, exon 1 of 1)	non-coding (NR_046241, exon 1 of 1)	1957	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
119811	chr19	41342101	41342900	+	0	NA	intron (NM_000660, intron 3 of 6)	AluJr|SINE|Alu	11422	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
159891	chr3	16892701	16893130	+	0	NA	intron (NM_001144382, intron 1 of 5)	MIRb|SINE|MIR	7960	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
165082	chr3	71481951	71482250	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	59989	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
65065	chr14	39394901	39395180	+	0	NA	Intergenic	AluSx|SINE|Alu	37460	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
92824	chr17	16086871	16087030	+	0	NA	intron (NM_001190440, intron 21 of 44)	intron (NM_001190440, intron 21 of 44)	66246	NR_145787	109623477		NR_145787		SNORD163	-	small nucleolar RNA, C/D box 163	snoRNA
10957	chr1	84177321	84177980	+	0	NA	intron (NM_001300915, intron 4 of 11)	AluJo|SINE|Alu	-3982	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
108195	chr18	63107451	63107550	+	0	NA	Intergenic	Intergenic	212269	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
79190	chr16	323421	323980	+	0	NA	intron (NM_181050, intron 2 of 9)	AluYm1|SINE|Alu	29023	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
33421	chr10	118729571	118730200	+	0	NA	intron (NM_153810, intron 2 of 8)	Tigger15a|DNA|TcMar-Tigger	25085	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
127723	chr2	43484371	43484800	+	0	NA	intron (NR_144316, intron 26 of 36)	intron (NR_144316, intron 26 of 36)	111389	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
188080	chr5	150155501	150156480	+	0	NA	promoter-TSS (NM_002609)	promoter-TSS (NM_002609)	-145	NM_001355017	5159		NM_002609	ENSG00000113721	PDGFRB	CD140B|IBGC4|IMF1|JTK12|KOGS|PDGFR|PDGFR-1|PDGFR1|PENTT	platelet derived growth factor receptor beta	protein-coding
187506	chr5	142354601	142355030	+	0	NA	intron (NR_120664, intron 3 of 3)	AluSx1|SINE|Alu	29522	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
110622	chr19	2208521	2209150	+	0	NA	intron (NM_032482, intron 11 of 27)	intron (NM_032482, intron 11 of 27)	25314	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
67345	chr14	69672351	69672730	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	60944	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
149890	chr21	36059751	36061030	+	0	NA	promoter-TSS (NM_001007261)	promoter-TSS (NM_001007261)	-26	NM_001007259	54093		NM_017438	ENSG00000185917	SETD4	C21orf18|C21orf27	SET domain containing 4	protein-coding
196350	chr6	43220651	43220950	+	0	NA	exon (NM_015089, exon 33 of 41)	exon (NM_015089, exon 33 of 41)	8681	NM_199184	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
176907	chr4	102803951	102804680	+	0	NA	intron (NM_003340, intron 4 of 7)	AluSx|SINE|Alu	21545	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
65090	chr14	39621351	39621750	+	0	NA	Intergenic	Intergenic	-189050	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
73211	chr15	41563571	41564180	+	0	NA	intron (NM_006293, intron 4 of 18)	intron (NM_006293, intron 4 of 18)	3903	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
153228	chr22	23965921	23967180	+	0	NA	promoter-TSS (NM_001084393)	promoter-TSS (NM_001084393)	-338	NM_001381852	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
152381	chr22	20519821	20520730	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	12228	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
79165	chr16	286751	287130	+	0	NA	TTS (NM_003502)	TTS (NM_003502)	3776	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
83036	chr16	22313051	22313500	+	0	NA	intron (NM_018119, intron 6 of 20).2	intron (NM_018119, intron 6 of 20).2	15866	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
193486	chr6	30548001	30548630	+	0	NA	intron (NM_005275, intron 8 of 11)	L2a|LINE|L2	-8394	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
72682	chr15	38551101	38551300	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	13614	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
142234	chr20	3096701	3096900	+	0	NA	Intergenic	AluJr4|SINE|Alu	-10111	NR_038395	100134015		NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
97067	chr17	42378821	42379650	+	0	NA	intron (NM_001369516, intron 1 of 23)	intron (NM_001369516, intron 1 of 23)	9207	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
137973	chr2	201193001	201193350	+	0	NA	intron (NM_001230, intron 4 of 7)	intron (NM_001230, intron 4 of 7)	10034	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
235516	chrX	47193351	47195050	+	0	NA	intron (NM_003334, intron 1 of 25)	CpG	371	NM_003334	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
48422	chr12	9677621	9678900	+	0	NA	intron (NM_001197317, intron 1 of 3)	L1MC1|LINE|L1	8547	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
74759	chr15	63231471	63231970	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	42114	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
23085	chr1	226653051	226654480	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	21303	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
1946	chr1	6552001	6552280	+	0	NA	intron (NM_024654, intron 1 of 11)	L1PA11|LINE|L1	2373	NM_024654	79707		NM_024654	ENSG00000162408	NOL9	Grc3|NET6	nucleolar protein 9	protein-coding
234390	chrX	16576051	16576230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	50945	NR_039762	100616428		NR_039762	ENSG00000265144	MIR548AM	-	microRNA 548am	ncRNA
216134	chr8	11457801	11459100	+	0	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	8303	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
230958	chr9	129438671	129439380	+	0	NA	Intergenic	L1MA5|LINE|L1	-49635	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
194773	chr6	34143351	34143450	+	0	NA	intron (NM_000841, intron 1 of 10)	intron (NM_000841, intron 1 of 10)	2687	NM_000841	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
14057	chr1	120776001	120776200	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-29456	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
117921	chr19	33063521	33063850	+	0	NA	intron (NM_033103, intron 1 of 14)	intron (NM_033103, intron 1 of 14)	1203	NM_033103	85415		NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	rhophilin Rho GTPase binding protein 2	protein-coding
235831	chrX	49308601	49309400	+	0	NA	intron (NM_001098413, intron 3 of 4)	HERV15-int|LTR|ERV1	5354	NM_001098413	102724473		NM_001098413	ENSG00000215274	GAGE10	GAGE-10	G antigen 10	protein-coding
35618	chr11	1778071	1778380	+	0	NA	Intergenic	Intergenic	-14298	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
189193	chr5	171422551	171423250	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	3253	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
58094	chr12	124687471	124688250	+	0	NA	Intergenic	MIRb|SINE|MIR	-120248	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
208945	chr7	74176071	74176880	+	0	NA	intron (NM_022170, intron 1 of 6)	intron (NM_022170, intron 1 of 6)	2119	NM_022170	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
124076	chr19	55616771	55616930	+	0	NA	3' UTR (NM_001195605, exon 2 of 2)	3' UTR (NM_001195605, exon 2 of 2)	7716	NM_203374	147808		NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
100890	chr17	64390171	64390550	+	0	NA	intron (NM_000442, intron 2 of 15)	intron (NM_000442, intron 2 of 15)	500	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
158364	chr22	50467871	50468230	+	0	NA	intron (NM_002972, intron 2 of 40)	MIRc|SINE|MIR	6985	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
10435	chr1	66240151	66240450	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-91808	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
96114	chr17	39640471	39640900	+	0	NA	intron (NM_001165938, intron 1 of 13)	intron (NM_001165938, intron 1 of 13)	3541	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
230608	chr9	128619671	128620030	+	0	NA	intron (NM_001375310, intron 44 of 57)	MLT1H|LTR|ERVL-MaLR	37000	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
188201	chr5	150683351	150683450	+	0	NA	Intergenic	AluY|SINE|Alu	17662	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
95347	chr17	35808601	35810200	+	0	NA	promoter-TSS (NM_003487).2	promoter-TSS (NM_003487).2	-84	NM_139215	8148		NM_003487	ENSG00000270647	TAF15	Npl3|RBP56|TAF2N|TAFII68	TATA-box binding protein associated factor 15	protein-coding
127624	chr2	43080101	43080450	+	0	NA	Intergenic	AluY|SINE|Alu	22170	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
128432	chr2	55418201	55418750	+	0	NA	intron (NM_018084, intron 2 of 31)	intron (NM_018084, intron 2 of 31)	1381	NM_018084	55704		NM_018084	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL	coiled-coil domain containing 88A	protein-coding
102431	chr17	75672171	75672330	+	0	NA	intron (NR_126036, intron 3 of 9)	intron (NR_126036, intron 3 of 9)	4912	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
41206	chr11	65655971	65656780	+	0	NA	intron (NM_001243984, intron 8 of 10)	intron (NM_001243984, intron 8 of 10)	6541	NM_021975	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
17191	chr1	156240971	156242350	+	0	NA	promoter-TSS (NM_199173)	promoter-TSS (NM_199173)	-524	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
119732	chr19	41259721	41260780	+	0	NA	3' UTR (NM_001699, exon 19 of 19)	3' UTR (NM_001699, exon 19 of 19)	-2307	NM_144732	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
89939	chr16	89738721	89739130	+	0	NA	exon (NM_000135, exon 42 of 43)	exon (NM_000135, exon 42 of 43)	17388	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
84685	chr16	30773571	30773730	+	0	NA	intron (NM_014771, intron 19 of 19)	intron (NM_014771, intron 19 of 19)	11328	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
80351	chr16	2502501	2502700	+	0	NA	3' UTR (NM_020705, exon 7 of 7)	3' UTR (NM_020705, exon 7 of 7)	-11126	NM_001198569	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
171818	chr4	667001	667800	+	0	NA	intron (NM_001350155, intron 16 of 17)	intron (NM_001350155, intron 16 of 17)	6876	NM_007100	521		NM_007100	ENSG00000169020	ATP5ME	ATP5I|ATP5K	ATP synthase membrane subunit e	protein-coding
182935	chr5	70900541	70901580	+	0	NA	intron (NM_022968, intron 1 of 2).4	CpG	391	NM_022978	728492		NM_022978	ENSG00000205572	SERF1B	FAM2B|H4F5C|h4F5	small EDRK-rich factor 1B	protein-coding
107392	chr18	46094101	46094500	+	0	NA	intron (NM_004046, intron 2 of 11)	intron (NM_004046, intron 2 of 11)	3996	NM_004046	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
163575	chr3	51945471	51945630	+	0	NA	exon (NM_005485, exon 7 of 11)	exon (NM_005485, exon 7 of 11)	3187	NM_001370240	10039		NM_005485	ENSG00000041880	PARP3	ADPRT3|ADPRTL2|ADPRTL3|ARTD3|IRT1|PADPRT-3	poly(ADP-ribose) polymerase family member 3	protein-coding
195066	chr6	35511721	35512300	+	0	NA	intron (NM_003322, intron 3 of 14)	CpG-23540	886	NM_003322	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
115855	chr19	16541551	16543450	+	0	NA	promoter-TSS (NM_006387)	promoter-TSS (NM_006387)	-63	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
196801	chr6	45930421	45930780	+	0	NA	intron (NR_045673, intron 1 of 4)	intron (NR_045673, intron 1 of 4)	6997	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
86053	chr16	57579271	57579630	+	0	NA	Intergenic	Intergenic	36807	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
94632	chr17	30026821	30027480	+	0	NA	intron (NR_026738, intron 7 of 15)	AluY|SINE|Alu	85516	NM_198529	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
101258	chr17	66312301	66312500	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	9787	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
175803	chr4	77814551	77814850	+	0	NA	intron (NM_001365006, intron 1 of 11)	intron (NM_001365006, intron 1 of 11)	4364	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
131771	chr2	98477821	98478300	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	32050	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
178888	chr4	155953171	155954280	+	0	NA	exon (NM_001334, exon 1 of 8)	exon (NM_001334, exon 1 of 8)	141	NM_001334	1519		NM_001334	ENSG00000256043	CTSO	CTSO1	cathepsin O	protein-coding
187702	chr5	143374301	143374900	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	28683	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
17898	chr1	160097701	160099700	+	0	NA	promoter-TSS (NM_001320247)	promoter-TSS (NM_001320247)	-81	NM_001320247	93185		NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
89288	chr16	88695951	88696730	+	0	NA	TTS (NM_001171816)	TTS (NM_001171816)	7241	NM_001171816	115992		NM_178841	ENSG00000158717	RNF166	-	ring finger protein 166	protein-coding
169131	chr3	155877671	155877830	+	0	NA	intron (NM_003875, intron 1 of 15)	MLT1A0|LTR|ERVL-MaLR	7100	NM_003875	8833		NM_003875	ENSG00000163655	GMPS	GATD7	guanine monophosphate synthase	protein-coding
111723	chr19	4341171	4341530	+	0	NA	Intergenic	AluSq|SINE|Alu	-2177	NM_001159846	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
62339	chr13	99085871	99086900	+	0	NA	promoter-TSS (NR_047482)	promoter-TSS (NR_047482)	309	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
63859	chr14	21642101	21642450	+	0	NA	Intergenic	Intergenic	-7335	NM_001005466	26534		NM_001005466	ENSG00000255582	OR10G2	OR14-41	olfactory receptor family 10 subfamily G member 2	protein-coding
105682	chr18	2654521	2657430	+	0	NA	promoter-TSS (NR_033754)	promoter-TSS (NR_033754)	249	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
213940	chr7	142669321	142669830	+	0	NA	intron (NM_001363538, intron 10 of 11)	intron (NM_001363538, intron 10 of 11)	3276	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
125763	chr2	23385071	23386080	+	0	NA	5' UTR (NM_052920, exon 1 of 14)	5' UTR (NM_052920, exon 1 of 14)	396	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
213696	chr7	140178901	140180030	+	0	NA	non-coding (NR_024451, exon 1 of 1)	non-coding (NR_024451, exon 1 of 1)	2204	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
115961	chr19	16888551	16889280	+	0	NA	promoter-TSS (NM_003950)	promoter-TSS (NM_003950)	-84	NM_003950	9002		NM_003950	ENSG00000127533	F2RL3	PAR4	F2R like thrombin or trypsin receptor 3	protein-coding
235712	chrX	48901101	48901700	+	0	NA	intron (NM_144495, intron 3 of 5)	intron (NM_144495, intron 3 of 5)	2908	NM_001167992	10084		NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
153110	chr22	23602071	23602230	+	0	NA	Intergenic	AluSx|SINE|Alu	-21860	NM_001369906	3543		NM_020070	ENSG00000128322	IGLL1	14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2	immunoglobulin lambda like polypeptide 1	protein-coding
121921	chr19	48441451	48441750	+	0	NA	intron (NM_000836, intron 11 of 13)	MIR|SINE|MIR	-4383	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
113190	chr19	8414621	8415050	+	0	NA	intron (NM_001369776, intron 1 of 5)	intron (NM_001369776, intron 1 of 5)	1530	NR_163145	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
69174	chr14	92615321	92616980	+	0	NA	intron (NM_024832, intron 4 of 9)	intron (NM_024832, intron 4 of 9)	39916	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
51612	chr12	52877951	52878330	+	0	NA	Intergenic	Intergenic	20844	NR_162090	113218482		NR_162090		MIR9898	-	microRNA 9898	ncRNA
8622	chr1	41673471	41674530	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-189317	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
163462	chr3	50615471	50616300	+	0	NA	intron (NM_001243926, intron 3 of 12)	(TTCA)n|Simple_repeat|Simple_repeat	-1246	NM_004635	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
104527	chr17	81245801	81246030	+	0	NA	exon (NM_001037984, exon 16 of 16)	exon (NM_001037984, exon 16 of 16)	6001	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
234529	chrX	19629171	19630150	+	0	NA	intron (NM_001353892, intron 9 of 17)	intron (NM_001353892, intron 9 of 17)	41339	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
196665	chr6	44385251	44385350	+	0	NA	Intergenic	Intergenic	-2406	NM_001253	988		NM_001253	ENSG00000096401	CDC5L	CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1	cell division cycle 5 like	protein-coding
112758	chr19	7397601	7398000	+	0	NA	intron (NM_015318, intron 1 of 20)	AluJo|SINE|Alu	2655	NM_015318	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
125664	chr2	20063221	20063480	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-11722	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
102347	chr17	75503271	75503430	+	0	NA	intron (NM_001142643, intron 16 of 18)	intron (NM_001142643, intron 16 of 18)	4802	NR_106843	102466911		NR_106843	ENSG00000284595	MIR6785	hsa-mir-6785	microRNA 6785	ncRNA
24636	chr1	246698921	246699600	+	0	NA	Intergenic	Intergenic	-25149	NM_016002	51097		NM_016002	ENSG00000143653	SCCPDH	CGI-49|NET11	saccharopine dehydrogenase (putative)	protein-coding
232349	chr9	135503501	135503700	+	0	NA	non-coding (NR_051967, exon 5 of 5)	non-coding (NR_051967, exon 5 of 5)	2847	NR_121579	101928525		NR_121579	ENSG00000226706	LOC101928525	-	uncharacterized LOC101928525	ncRNA
85727	chr16	56641921	56642500	+	0	NA	Intergenic	MER51A|LTR|ERV1	-1477	NR_027781	326343		NM_175620	ENSG00000291095	MT1DP	MTM	metallothionein 1D, pseudogene	pseudo
111624	chr19	4120721	4121280	+	0	NA	intron (NM_030662, intron 1 of 10)	intron (NM_030662, intron 1 of 10)	3122	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
7780	chr1	36227571	36228180	+	0	NA	intron (NM_001321471, intron 2 of 12)	intron (NM_001321471, intron 2 of 12)	3432	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
18573	chr1	163319171	163319330	+	0	NA	non-coding (NR_045630, exon 2 of 4)	non-coding (NR_045630, exon 2 of 4)	2541	NR_045630	127814295		NR_045630	ENSG00000232995	LOC127814295	-	uncharacterized LOC127814295	ncRNA
102223	chr17	75235971	75236130	+	0	NA	TTS (NM_001172704)	TTS (NM_001172704)	25556	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
143111	chr20	23366121	23366980	+	0	NA	intron (NM_001317012, intron 3 of 6)	intron (NM_001317012, intron 3 of 6)	2187	NM_001317019	64412		NM_022482	ENSG00000125812	GZF1	JLSM|ZBTB23|ZNF336	GDNF inducible zinc finger protein 1	protein-coding
159346	chr3	13149551	13149930	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	-76311	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
75074	chr15	64358051	64358350	+	0	NA	Intergenic	Intergenic	-2027	NM_001329607	53944		NM_022048	ENSG00000169118	CSNK1G1	CK1gamma1	casein kinase 1 gamma 1	protein-coding
222672	chr8	141227021	141227280	+	0	NA	intron (NM_001286646, intron 2 of 8)	CpG	1424	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
208671	chr7	73213171	73213400	+	0	NA	Intergenic	Intergenic	-7354	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
180751	chr5	32127901	32128430	+	0	NA	intron (NM_022130, intron 3 of 3)	L1MEc|LINE|L1	46154	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
129207	chr2	68217621	68218150	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	34647	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
207993	chr7	55474271	55474430	+	0	NA	intron (NM_001321242, intron 4 of 4)	intron (NM_001321242, intron 4 of 4)	52530	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
70785	chr14	103520451	103523450	+	0	NA	exon (NM_001362531, exon 3 of 7)	exon (NM_001362531, exon 3 of 7)	880	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
50115	chr12	44932001	44932250	+	0	NA	Intergenic	L1PA3|LINE|L1	-18197	NM_001145110	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
213668	chr7	139916371	139916800	+	0	NA	intron (NM_030984, intron 4 of 11)	intron (NM_030984, intron 4 of 11)	87321	NM_001366538	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
37170	chr11	13940201	13941080	+	0	NA	Intergenic	Intergenic	-15777	NR_135052	101928132		NR_135052	ENSG00000254438	LINC02683	-	long intergenic non-protein coding RNA 2683	ncRNA
199100	chr6	111673801	111674000	+	0	NA	intron (NM_001370529, intron 11 of 11)	intron (NM_001370529, intron 11 of 11)	-67626	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
208358	chr7	66582901	66583500	+	0	NA	intron (NR_111976, intron 1 of 3)	MSTA|LTR|ERVL-MaLR	9207	NR_111978	493754		NR_002933	ENSG00000291136	RABGEF1P1	GS1-124K5.11	RABGEF1 pseudogene 1	pseudo
150551	chr21	43086671	43086830	+	0	NA	Intergenic	L1M5|LINE|L1	-9807	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
104845	chr17	81839051	81839150	+	0	NA	Intergenic	Intergenic	-4050	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
106904	chr18	25351851	25352580	+	0	NA	promoter-TSS (NM_001308225)	promoter-TSS (NM_001308225)	-49	NM_001308225	25925		NM_015461	ENSG00000198795	ZNF521	EHZF|Evi3	zinc finger protein 521	protein-coding
32186	chr10	101601671	101601830	+	0	NA	promoter-TSS (NR_036115)	promoter-TSS (NR_036115)	-253	NR_036115	100423033		NR_036115	ENSG00000283558	MIR3158-2	mir-3158-2	microRNA 3158-2	ncRNA
78054	chr15	90094201	90094680	+	0	NA	intron (NM_002168, intron 1 of 10)	intron (NM_002168, intron 1 of 10)	6181	NM_001289910	3418		NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDH-2|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2	protein-coding
104370	chr17	81017671	81018930	+	0	NA	Intergenic	L1MEg1|LINE|L1	16419	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
218747	chr8	58865621	58866050	+	0	NA	intron (NM_014729, intron 3 of 8)	AluSx1|SINE|Alu	-205982	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
66394	chr14	61496671	61497030	+	0	NA	intron (NM_006255, intron 10 of 13)	MIR|SINE|MIR	73344	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
15553	chr1	150544351	150544650	+	0	NA	Intergenic	Intergenic	-4908	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
31582	chr10	97340051	97340550	+	0	NA	Intergenic	L1MB5|LINE|L1	-5571	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
236202	chrX	65679201	65679850	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	11871	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
40153	chr11	62860501	62860900	+	0	NA	intron (NM_001012664, intron 1 of 9)	LTR5B|LTR|ERVK	4591	NM_001012664	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
85915	chr16	57083751	57085380	+	0	NA	Intergenic	Intergenic	-8018	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
31318	chr10	92699121	92699850	+	0	NA	Intergenic	Intergenic	9530	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
230870	chr9	129174991	129175400	+	0	NA	TTS (NM_203434)	TTS (NM_203434)	3066	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
13001	chr1	111142551	111142850	+	0	NA	intron (NR_138484, intron 1 of 9)	L2b|LINE|L2	2477	NR_138484	10390		NM_006090	ENSG00000134255	CEPT1	-	choline/ethanolamine phosphotransferase 1	protein-coding
4107	chr1	19288021	19288980	+	0	NA	exon (NM_012067, exon 1 of 7)	exon (NM_012067, exon 1 of 7)	270	NM_012067	22977		NM_012067	ENSG00000162482	AKR7A3	AFAR2	aldo-keto reductase family 7 member A3	protein-coding
230345	chr9	128021921	128022930	+	0	NA	Intergenic	Intergenic	-41436	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
140550	chr2	233263421	233263680	+	0	NA	intron (NM_001190267, intron 3 of 17)	intron (NM_001190267, intron 3 of 17)	11877	NM_017974	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
77721	chr15	85700101	85700930	+	0	NA	intron (NM_007200, intron 17 of 36)	intron (NM_007200, intron 17 of 36)	58210	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
106654	chr18	22988201	22988400	+	0	NA	intron (NM_203291, intron 8 of 18)	intron (NM_203291, intron 8 of 18)	54424	NM_203291	5932		NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JAWAD|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding
166830	chr3	122890201	122890400	+	0	NA	non-coding (NR_024618, exon 1 of 1)	non-coding (NR_024618, exon 1 of 1)	3787	NR_024618	100129550		NR_024618	ENSG00000273033	LINC02035	-	long intergenic non-protein coding RNA 2035	ncRNA
232043	chr9	133421551	133422300	+	0	NA	promoter-TSS (NM_139027).2	promoter-TSS (NM_139027).2	-442	NM_139027	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
54799	chr12	94454371	94454730	+	0	NA	intron (NM_001368039, intron 1 of 16)	LTR12_|LTR|ERV1	5317	NM_001346457	51134		NM_016122	ENSG00000173588	CEP83	CCDC41|NPHP18|NY-REN-58	centrosomal protein 83	protein-coding
78542	chr15	92967071	92967430	+	0	NA	intron (NM_001271, intron 16 of 38)	intron (NM_001271, intron 16 of 38)	62851	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
91647	chr17	5479401	5479600	+	0	NA	intron (NR_130906, intron 5 of 5)	Alu|SINE|Alu	6678	NR_130906	51009		NM_016041	ENSG00000072849	DERL2	CGI-101|DERtrin-2|F-LAN-1|F-LANa|FLANa|derlin-2	derlin 2	protein-coding
180939	chr5	34917771	34918380	+	0	NA	intron (NM_018321, intron 1 of 9)	AluJo|SINE|Alu	2364	NM_018321	55299		NM_018321	ENSG00000113460	BRIX1	BRIX|BXDC2	biogenesis of ribosomes BRX1	protein-coding
195098	chr6	35598901	35599100	+	0	NA	intron (NM_001145775, intron 6 of 11)	AluSz6|SINE|Alu	65789	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
157502	chr22	45329551	45330130	+	0	NA	intron (NR_146323, intron 7 of 11)	intron (NR_146323, intron 7 of 11)	11397	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
81330	chr16	4743321	4743780	+	0	NA	intron (NM_139170, intron 5 of 9)	intron (NM_139170, intron 5 of 9)	9013	NM_139170	146562		NM_139170	ENSG00000166246	DNAAF8	C16orf71|Daap1	dynein axonemal assembly factor 8	protein-coding
220480	chr8	100463621	100464250	+	0	NA	Intergenic	Intergenic	81172	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
211649	chr7	106258901	106259700	+	0	NA	intron (NM_005746, intron 8 of 10)	Tigger1|DNA|TcMar-Tigger	25683	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
132324	chr2	105369771	105370430	+	0	NA	intron (NM_001318897, intron 2 of 4)	AluJb|SINE|Alu	28951	NM_001318895	2274		NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
23959	chr1	235154021	235154280	+	0	NA	intron (NR_144490, intron 3 of 9)	AluY|SINE|Alu	7100	NR_027762	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
238175	chrX	136872571	136873000	+	0	NA	TTS (NR_028477)	TTS (NR_028477)	6486	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
176422	chr4	89257971	89258530	+	0	NA	intron (NM_198281, intron 1 of 1)	AluSc5|SINE|Alu	49550	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
58102	chr12	124745721	124746230	+	0	NA	Intergenic	Intergenic	93696	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
19637	chr1	180193151	180193250	+	0	NA	intron (NM_001004128, intron 10 of 12)	L2a|LINE|L2	-37064	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
29744	chr10	72164651	72165130	+	0	NA	intron (NM_001369102, intron 6 of 11)	L1MB5|LINE|L1	51066	NM_001369106	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
77883	chr15	89057421	89057980	+	0	NA	Intergenic	Intergenic	-30756	NM_007011	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
219051	chr8	65789901	65790300	+	0	NA	intron (NM_001242318, intron 1 of 12)	L2a|LINE|L2	-1043	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
109550	chr19	879071	880180	+	0	NA	intron (NM_005481, intron 8 of 15)	intron (NM_005481, intron 8 of 15)	13562	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
59150	chr13	21558101	21558330	+	0	NA	intron (NM_152726, intron 2 of 11)	L1M4b|LINE|L1	45955	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
229004	chr9	113591651	113592180	+	0	NA	intron (NM_144488, intron 22 of 25)	intron (NM_144488, intron 22 of 25)	-2005	NM_144489	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
106753	chr18	23579151	23579250	+	0	NA	intron (NM_000271, intron 1 of 24)	intron (NM_000271, intron 1 of 24)	7306	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
110457	chr19	2006101	2006700	+	0	NA	intron (NM_017797, intron 1 of 8)	AluSx|SINE|Alu	9314	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
229331	chr9	120900451	120901200	+	0	NA	Intergenic	AluJr|SINE|Alu	-5929	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
134544	chr2	143727651	143727950	+	0	NA	intron (NM_018460, intron 13 of 13)	intron (NM_018460, intron 13 of 13)	-209267	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
80896	chr16	3721771	3722330	+	0	NA	Intergenic	AluSc8|SINE|Alu	-4526	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
116228	chr19	17522721	17523750	+	0	NA	promoter-TSS (NM_001098524)	promoter-TSS (NM_001098524)	-66	NM_001098524	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
183167	chr5	75265421	75265880	+	0	NA	Intergenic	AluSx|SINE|Alu	-28772	NM_001164443	256006		NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
76529	chr15	75109501	75109700	+	0	NA	Intergenic	Intergenic	66314	NM_001301105	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
107143	chr18	35142501	35142700	+	0	NA	non-coding (NR_046177, exon 7 of 7)	non-coding (NR_046177, exon 7 of 7)	-98434	NM_032347	84307		NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
35034	chr11	570721	571000	+	0	NA	Intergenic	AluSp|SINE|Alu	-2403	NR_038262	100506211		NR_038262	ENSG00000247095	MIR210HG	-	MIR210 host gene	ncRNA
179165	chr4	169810371	169810530	+	0	NA	Intergenic	Intergenic	-52506	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
59411	chr13	25286571	25287950	+	0	NA	non-coding (NR_169592, exon 1 of 14)	non-coding (NR_169592, exon 1 of 14)	228	NM_001385233	9107		NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
159379	chr3	13354201	13354400	+	0	NA	intron (NM_024923, intron 16 of 39)	intron (NM_024923, intron 16 of 39)	66022	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
136832	chr2	182980071	182980250	+	0	NA	intron (NM_205842, intron 14 of 31)	intron (NM_205842, intron 14 of 31)	58297	NM_013436	10787		NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125|p125Nap1	NCK associated protein 1	protein-coding
232376	chr9	135926821	135927650	+	0	NA	Intergenic	Intergenic	-19689	NM_015447	157922		NM_015447	ENSG00000130559	CAMSAP1	CDCBM12	calmodulin regulated spectrin associated protein 1	protein-coding
48920	chr12	12622371	12623550	+	0	NA	intron (NM_001310, intron 1 of 3)	intron (NM_001310, intron 1 of 3)	11084	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
11476	chr1	90706951	90707680	+	0	NA	Intergenic	Intergenic	9987	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
152702	chr22	21636021	21636280	+	0	NA	TTS (NM_001331066)	TTS (NM_001331066)	3353	NM_001331066	164592		NM_152612	ENSG00000161180	CCDC116	-	coiled-coil domain containing 116	protein-coding
14441	chr1	144397971	144399000	+	0	NA	Intergenic	Intergenic	-14091	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
229837	chr9	125821651	125821950	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	73617	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
218592	chr8	55881651	55881950	+	0	NA	intron (NM_002350, intron 1 of 12)	L2a|LINE|L2	1965	NM_001111097	4067		NM_002350	ENSG00000254087	LYN	JTK8|SAIDV|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
184931	chr5	112974921	112975180	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-1748	NM_001242377	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
165734	chr3	105376651	105376750	+	0	NA	intron (NM_001243281, intron 1 of 13)	L2c|LINE|L2	9791	NM_001627	214		NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
122090	chr19	48742821	48744100	+	0	NA	non-coding (NR_135832, exon 5 of 9)	non-coding (NR_135832, exon 5 of 9)	2472	NR_135832	284359		NM_182575	ENSG00000182264	IZUMO1	IZUMO|OBF	izumo sperm-oocyte fusion 1	protein-coding
50534	chr12	47900821	47901380	+	0	NA	intron (NM_001017535, intron 1 of 10)	intron (NM_001017535, intron 1 of 10)	3894	NM_001374661	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
157935	chr22	49788171	49788630	+	0	NA	intron (NR_146335, intron 8 of 13)	intron (NR_146335, intron 8 of 13)	35931	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
5248	chr1	25019051	25019600	+	0	NA	Intergenic	Intergenic	-4178	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
73842	chr15	49471851	49471950	+	0	NA	intron (NM_002009, intron 2 of 3)	L3|LINE|CR1	48658	NM_002009	2252		NM_002009	ENSG00000140285	FGF7	HBGF-7|KGF	fibroblast growth factor 7	protein-coding
28681	chr10	60726321	60726580	+	0	NA	intron (NM_001204403, intron 1 of 43)	MIRb|SINE|MIR	7078	NM_001204403	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
186070	chr5	134089021	134089550	+	0	NA	Intergenic	Intergenic	-25396	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
41723	chr11	66659301	66659930	+	0	NA	intron (NM_001198844, intron 2 of 2)	L2b|LINE|L2	18272	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
192944	chr6	27792901	27793280	+	0	NA	Intergenic	LTR71B|LTR|ERV1	14839	NM_003519	8340		NM_003519	ENSG00000185130	H2BC13	H2B/c|H2BFC|HIST1H2BL|dJ97D16.4	H2B clustered histone 13	protein-coding
82629	chr16	18969171	18969550	+	0	NA	Intergenic	Intergenic	-14574	NM_001300732	79905		NM_024847	ENSG00000170537	TMC7	-	transmembrane channel like 7	protein-coding
99583	chr17	50502771	50503300	+	0	NA	Intergenic	L2a|LINE|L2	-5404	NR_158785	84073		NM_032133	ENSG00000136449	MYCBPAP	AMAP-1|AMAP1	MYCBP associated protein	protein-coding
12674	chr1	109422371	109422730	+	0	NA	intron (NM_001199774, intron 1 of 8)	AluSx4|SINE|Alu	3898	NM_001199772	5686		NM_002790	ENSG00000143106	PSMA5	PSC5|ZETA	proteasome 20S subunit alpha 5	protein-coding
64546	chr14	24535401	24535800	+	0	NA	Intergenic	Intergenic	-27335	NM_001836	1215		NM_001836	ENSG00000092009	CMA1	CYH|MCT1|chymase	chymase 1	protein-coding
41188	chr11	65634771	65635130	+	0	NA	intron (NM_032223, intron 29 of 34)	intron (NM_032223, intron 29 of 34)	-1360	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
65579	chr14	51996071	51996680	+	0	NA	intron (NM_016039, intron 3 of 7)	intron (NM_016039, intron 3 of 7)	6829	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
229496	chr9	122221271	122221800	+	0	NA	5' UTR (NM_001242335, exon 1 of 7)	5' UTR (NM_001242335, exon 1 of 7)	205	NM_001242335	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
61571	chr13	71292801	71293000	+	0	NA	Intergenic	AluY|SINE|Alu	277759	NR_047699	100885781		NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA
153363	chr22	24432851	24433430	+	0	NA	non-coding (NR_103546, exon 19 of 20)	non-coding (NR_103546, exon 19 of 20)	1021	NM_001278497	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
88227	chr16	81890021	81890650	+	0	NA	intron (NM_002661, intron 10 of 32)	LTR8A|LTR|ERV1	111044	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
12715	chr1	109506271	109506850	+	0	NA	3' UTR (NM_020703, exon 2 of 2)	3' UTR (NM_020703, exon 2 of 2)	3167	NM_020703	57463		NM_020703	ENSG00000181754	AMIGO1	ALI2|AMIGO|AMIGO-1	adhesion molecule with Ig like domain 1	protein-coding
42316	chr11	68471901	68472650	+	0	NA	intron (NM_001352362, intron 2 of 24)	intron (NM_001352362, intron 2 of 24)	11523	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
197299	chr6	71832151	71832250	+	0	NA	Intergenic	L1PA3|LINE|L1	-54503	NM_001350412	22999		NM_014989	ENSG00000079841	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
145024	chr20	38032851	38034500	+	0	NA	promoter-TSS (NM_001303457)	promoter-TSS (NM_001303457)	-71	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
165633	chr3	101777521	101777900	+	0	NA	Intergenic	Intergenic	-1501	NM_001348993	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
210240	chr7	99378851	99379800	+	0	NA	intron (NM_005720, intron 1 of 9)	intron (NM_005720, intron 1 of 9)	4595	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
45889	chr11	120212101	120212300	+	0	NA	intron (NM_178507, intron 1 of 3)	intron (NM_178507, intron 1 of 3)	1168	NM_178507	220323		NM_178507	ENSG00000184232	OAF	NS5ATP13TP2	out at first homolog	protein-coding
154559	chr22	36236401	36236900	+	0	NA	intron (NM_145637, intron 2 of 5)	intron (NM_145637, intron 2 of 5)	2877	NM_030882	23780		NM_030882	ENSG00000128335	APOL2	APOL-II|APOL3	apolipoprotein L2	protein-coding
35817	chr11	2258551	2258650	+	0	NA	Intergenic	Intergenic	11988	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
89106	chr16	88491451	88492150	+	0	NA	intron (NM_153813, intron 3 of 9)	CpG	22882	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
41881	chr11	67244571	67245730	+	0	NA	intron (NM_012308, intron 13 of 20)	intron (NM_012308, intron 13 of 20)	5136	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
153069	chr22	23303251	23303350	+	0	NA	intron (NM_004327, intron 16 of 22)	L2b|LINE|L2	-23316	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
26735	chr10	22685901	22686750	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	27783	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
183239	chr5	76385821	76386080	+	0	NA	Intergenic	Intergenic	-17335	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
145942	chr20	46040571	46041180	+	0	NA	intron (NM_020708, intron 7 of 25)	intron (NM_020708, intron 7 of 25)	11660	NM_020708	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
184759	chr5	109880971	109881130	+	0	NA	Intergenic	Intergenic	-2132	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
12927	chr1	110652971	110653130	+	0	NA	TTS (NR_109846)	TTS (NR_109846)	18725	NR_109846	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
90854	chr17	2364451	2365350	+	0	NA	exon (NM_001098509, exon 10 of 23)	exon (NM_001098509, exon 10 of 23)	27399	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
235441	chrX	46257501	46257700	+	0	NA	Intergenic	LTR8A|LTR|ERV1	70074	NR_110388	101927574		NR_110388		LINC01186	ZNF674-1	long intergenic non-protein coding RNA 1186	ncRNA
76895	chr15	77989571	77989730	+	0	NA	Intergenic	Intergenic	4575	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
76401	chr15	74631771	74632630	+	0	NA	3' UTR (NM_025083, exon 7 of 7)	3' UTR (NM_025083, exon 7 of 7)	16364	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
92741	chr17	14318501	14319250	+	0	NA	intron (NM_006041, intron 1 of 1)	intron (NM_006041, intron 1 of 1)	15135	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
229468	chr9	121896971	121897130	+	0	NA	intron (NM_001139442, intron 6 of 8)	intron (NM_001139442, intron 6 of 8)	154265	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
194218	chr6	32193701	32194130	+	0	NA	TTS (NM_004557)	TTS (NM_004557)	-1272	NM_001276501	63940		NM_022107	ENSG00000213654	GPSM3	AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1	G protein signaling modulator 3	protein-coding
20163	chr1	192810371	192810780	+	0	NA	intron (NM_002923, intron 3 of 4)	intron (NM_002923, intron 3 of 4)	1536	NM_002923	5997		NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G protein signaling 2	protein-coding
210573	chr7	100358071	100358230	+	0	NA	5' UTR (NM_001371931, exon 1 of 5)	5' UTR (NM_001371931, exon 1 of 5)	147	NM_178238	29990		NM_013440	ENSG00000121716	PILRB	FDFACT1|FDFACT2	paired immunoglobin like type 2 receptor beta	protein-coding
51435	chr12	52031171	52031780	+	0	NA	intron (NM_001202233, intron 1 of 7)	AluSx|SINE|Alu	-6240	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
211676	chr7	106346521	106347450	+	0	NA	Intergenic	Charlie6|DNA|hAT-Charlie	-62002	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
230521	chr9	128336621	128337380	+	0	NA	Intergenic	AluSx|SINE|Alu	-3527	NM_005094	10999		NM_005094	ENSG00000167114	SLC27A4	ACSVL4|FATP4|IPS	solute carrier family 27 member 4	protein-coding
52403	chr12	55745571	55746650	+	0	NA	intron (NM_005811, intron 1 of 2)	intron (NM_005811, intron 1 of 2)	2988	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
102841	chr17	76473371	76474150	+	0	NA	intron (NR_164787, intron 14 of 18)	intron (NR_164787, intron 14 of 18)	6157	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
111170	chr19	3355821	3356080	+	0	NA	Intergenic	AluY|SINE|Alu	-3680	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
128842	chr2	63841501	63843000	+	0	NA	intron (NM_006759, intron 1 of 9)	intron (NM_006759, intron 1 of 9)	354	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
117558	chr19	21081771	21082900	+	0	NA	non-coding (NR_117086, exon 1 of 7)	non-coding (NR_117086, exon 1 of 7)	132	NM_182515	148206		NM_182515	ENSG00000160352	ZNF714	-	zinc finger protein 714	protein-coding
76860	chr15	77906951	77907250	+	0	NA	Intergenic	Intergenic	19746	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
68559	chr14	89378001	89378800	+	0	NA	intron (NM_001085471, intron 2 of 6)	AmnSINE2|SINE|tRNA-Deu	38833	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
61620	chr13	73715101	73716400	+	0	NA	intron (NM_007249, intron 6 of 7)	intron (NM_007249, intron 6 of 7)	151506	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
179504	chr4	184666921	184667400	+	0	NA	intron (NR_144312, intron 6 of 14)	intron (NR_144312, intron 6 of 14)	17422	NM_001345897	201973		NM_152683	ENSG00000164306	PRIMPOL	CCDC111|MYP22|Primpol1	primase and DNA directed polymerase	protein-coding
62137	chr13	95698151	95698700	+	0	NA	intron (NM_006260, intron 1 of 11)	L1PA15-16|LINE|L1	21286	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
32208	chr10	101780971	101781730	+	0	NA	promoter-TSS (NM_001206389)	promoter-TSS (NM_001206389)	-981	NM_001206389	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
196307	chr6	43056071	43056730	+	0	NA	exon (NM_015950, exon 3 of 7)	exon (NM_015950, exon 3 of 7)	-2549	NM_001374874	9820		NM_014780	ENSG00000044090	CUL7	3M1|CUL-7|KIAA0076|dJ20C7.5	cullin 7	protein-coding
176950	chr4	103071871	103072030	+	0	NA	intron (NM_001370207, intron 1 of 10)	intron (NM_001370207, intron 1 of 10)	4811	NM_001370204	133308		NM_178833	ENSG00000164038	SLC9B2	NHA2|NHE10|NHEDC2	solute carrier family 9 member B2	protein-coding
151048	chr21	44656321	44656650	+	0	NA	intron (NM_144991, intron 1 of 11)	L1MEf|LINE|L1	-1447	NM_198697	386683		NM_198697	ENSG00000205439	KRTAP12-3	KRTAP12.3	keratin associated protein 12-3	protein-coding
9950	chr1	54714671	54714830	+	0	NA	intron (NR_037641, intron 22 of 32)	intron (NR_037641, intron 22 of 32)	-1072	NM_001291333	7268		NM_004623	ENSG00000243725	TTC4	CNS1	tetratricopeptide repeat domain 4	protein-coding
192022	chr6	16424851	16424950	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	186313	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
159073	chr3	11803901	11804630	+	0	NA	intron (NM_138807, intron 6 of 6)	L1MC5|LINE|L1	42620	NR_135611	132001		NM_138807	ENSG00000144559	TAMM41	C3orf31|COXPD56|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
66024	chr14	58272501	58273000	+	0	NA	TTS (NM_152132)	TTS (NM_152132)	-15283	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
43969	chr11	93773851	93774350	+	0	NA	Intergenic	Intergenic	-10182	NM_004268	9440		NM_004268	ENSG00000042429	MED17	CRSP6|CRSP77|DRIP80|SRB4|TRAP80	mediator complex subunit 17	protein-coding
92978	chr17	17124001	17124200	+	0	NA	intron (NM_015134, intron 3 of 22)	MIR1_Amn|SINE|MIR	81643	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
51957	chr12	53754401	53754600	+	0	NA	intron (NR_104332, intron 2 of 2)	MIRb|SINE|MIR	2534	NR_104332	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
94415	chr17	29074501	29075280	+	0	NA	exon (NM_001346766, exon 42 of 42)	exon (NM_001346766, exon 42 of 42)	719	NM_004740	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
133791	chr2	127779401	127779600	+	0	NA	intron (NM_001006623, intron 1 of 7)	MER112|DNA|hAT-Charlie	31671	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
176600	chr4	98995111	98996800	+	0	NA	intron (NM_015143, intron 1 of 10)	CpG	234	NM_015143	23173		NM_015143	ENSG00000164024	METAP1	MAP1A|MetAP1A	methionyl aminopeptidase 1	protein-coding
133460	chr2	119757921	119758450	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-1737	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
86786	chr16	67804701	67804900	+	0	NA	intron (NM_001320238, intron 1 of 12)	AluSx|SINE|Alu	1760	NM_020850	57610		NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
182502	chr5	64768071	64769300	+	0	NA	promoter-TSS (NM_001318000)	promoter-TSS (NM_001318000)	6	NM_173829	285672		NM_173829	ENSG00000153006	SREK1IP1	P18SRP|SFRS12IP1	SREK1 interacting protein 1	protein-coding
77130	chr15	79339881	79340100	+	0	NA	intron (NM_001330376, intron 2 of 2)	intron (NM_001330376, intron 2 of 2)	28878	NM_007364	23423		NM_007364	ENSG00000166557	TMED3	C15orf22|P24B|p24g4|p24gamma4|p26	transmembrane p24 trafficking protein 3	protein-coding
13873	chr1	117928951	117930580	+	0	NA	promoter-TSS (NM_006784)	promoter-TSS (NM_006784)	26	NM_006784	10885		NM_006784	ENSG00000065183	WDR3	DIP2|UTP12	WD repeat domain 3	protein-coding
161595	chr3	43065021	43065280	+	0	NA	Intergenic	L1PA2|LINE|L1	40929	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
143564	chr20	31617771	31618130	+	0	NA	Intergenic	AluJr|SINE|Alu	10764	NR_036161	100422904		NR_036161	ENSG00000264395	MIR3193	-	microRNA 3193	ncRNA
224391	chr9	13038171	13038350	+	0	NA	Intergenic	L1PA2|LINE|L1	-65627	NR_132976	106635615		NR_132976		SNORD137	-	small nucleolar RNA, C/D box 137	snoRNA
171940	chr4	882601	882800	+	0	NA	exon (NM_005255, exon 14 of 28)	exon (NM_005255, exon 14 of 28)	49616	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
156058	chr22	39988751	39988850	+	0	NA	Intergenic	Intergenic	-6154	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
198622	chr6	107753721	107754250	+	0	NA	intron (NM_001286408, intron 1 of 6)	L2a|LINE|L2	-21835	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
197434	chr6	73655771	73655930	+	0	NA	Intergenic	Intergenic	-1858	NM_001382634	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
185729	chr5	132071471	132071800	+	0	NA	Intergenic	Intergenic	-2154	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
32868	chr10	110080451	110081150	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	71180	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
225830	chr9	37915101	37915300	+	0	NA	TTS (NM_003028)	TTS (NM_003028)	-10847	NR_024872	92014		NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
152445	chr22	20602671	20603080	+	0	NA	Intergenic	Intergenic	-86680	NR_024592	266697		NR_024592		POM121L4P	POM121L1|POM121L1P	POM121 transmembrane nucleoporin like 4, pseudogene	pseudo
24516	chr1	244730351	244730880	+	0	NA	Intergenic	CpG	77489	NM_001297746	51029		NM_016076	ENSG00000121644	DESI2	C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
184512	chr5	100903001	100903900	+	0	NA	promoter-TSS (NM_005668)	promoter-TSS (NM_005668)	-168	NM_175052	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
182987	chr5	72137801	72138200	+	0	NA	intron (NM_005909, intron 2 of 6)	intron (NM_005909, intron 2 of 6)	30525	NM_005909	4131		NM_005909	ENSG00000131711	MAP1B	DFNA83|FUTSCH|MAP5|PPP1R102|PVNH9	microtubule associated protein 1B	protein-coding
228168	chr9	97014901	97015330	+	0	NA	Intergenic	AluSz|SINE|Alu	-1433	NM_001355230	84278		NM_001355228	ENSG00000290770	MFSD14CP	HIATL2|MFSD14C	major facilitator superfamily domain containing 14C, pseudogene	pseudo
32161	chr10	101452671	101452830	+	0	NA	intron (NM_001256856, intron 2 of 13)	intron (NM_001256856, intron 2 of 13)	98585	NM_003939	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
176264	chr4	87009121	87009550	+	0	NA	intron (NM_001313960, intron 1 of 17)	MIRb|SINE|MIR	2334	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
61956	chr13	79385701	79386930	+	0	NA	intron (NM_022118, intron 1 of 20)	Charlie1a|DNA|hAT-Charlie	19906	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
23453	chr1	228470821	228471230	+	0	NA	Intergenic	Intergenic	8951	NR_039812	100616308		NR_039812	ENSG00000266174	MIR4666A	MIR4666|hsa-mir-4666a	microRNA 4666a	ncRNA
136936	chr2	190120051	190120300	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-17602	NM_001042521	84281		NM_032321	ENSG00000187699	C2orf88	smAKAP	chromosome 2 open reading frame 88	protein-coding
168396	chr3	142148001	142148200	+	0	NA	intron (NM_001178139, intron 1 of 12)	intron (NM_001178139, intron 1 of 12)	1444	NM_001375773	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
8333	chr1	40173101	40173650	+	0	NA	intron (NM_012421, intron 1 of 7)	AluSp|SINE|Alu	11988	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
8285	chr1	40013771	40015130	+	0	NA	Intergenic	LTR24C|LTR|ERV1	-25790	NM_001350479	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
51532	chr12	52306151	52306250	+	0	NA	exon (NM_001320198, exon 9 of 11)	exon (NM_001320198, exon 9 of 11)	-14666	NM_002281	3887		NM_002281	ENSG00000205426	KRT81	HB1|Hb-1|K81|KRTHB1|MLN137|ghHkb1|hHAKB2-1	keratin 81	protein-coding
203452	chr7	378521	378780	+	0	NA	promoter-TSS (NR_033960)	promoter-TSS (NR_033960)	-775	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
21391	chr1	205261451	205261750	+	0	NA	intron (NM_001331034, intron 1 of 3)	AluJb|SINE|Alu	4403	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
25399	chr10	6524501	6524700	+	0	NA	intron (NM_001323265, intron 1 of 17)	MamRTE1|LINE|RTE-BovB	55676	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
52136	chr12	54211671	54212430	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	19426	NR_039851	100616400		NR_039851	ENSG00000283803	MIR3198-2	mir-3198-2	microRNA 3198-2	ncRNA
213818	chr7	141073981	141074950	+	0	NA	exon (NM_001195278, exon 1 of 4)	exon (NM_001195278, exon 1 of 4)	401	NM_001195278	100507421		NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
16147	chr1	153678571	153679090	+	0	NA	5' UTR (NM_000906, exon 1 of 22)	5' UTR (NM_000906, exon 1 of 22)	142	NM_000906	4881		NM_000906	ENSG00000169418	NPR1	ANPRA|ANPa|GUC2A|GUCY2A|NPRA	natriuretic peptide receptor 1	protein-coding
94512	chr17	29394901	29395130	+	0	NA	intron (NM_025142, intron 1 of 17)	AluJo|SINE|Alu	4090	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
192208	chr6	17804201	17804700	+	0	NA	exon (NM_001105566, exon 20 of 38)	exon (NM_001105566, exon 20 of 38)	97407	NR_134618	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
15314	chr1	149864001	149864700	+	0	NA	Intergenic	Intergenic	-3191	NM_003548	8370		NM_003548	ENSG00000270882	H4C14	FO108|H4|H4-16|H4/n|H4C1|H4C11|H4C12|H4C13|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2|H4FN|HIST2H4|HIST2H4A	H4 clustered histone 14	protein-coding
87820	chr16	75617671	75618430	+	0	NA	intron (NM_001324453, intron 3 of 6)	AluJo|SINE|Alu	5231	NM_001324452	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
179289	chr4	177308921	177310550	+	0	NA	promoter-TSS (NM_018248)	promoter-TSS (NM_018248)	-139	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
43070	chr11	74591401	74591700	+	0	NA	Intergenic	L2a|LINE|L2	-1032	NR_046409	10714		NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
45676	chr11	119039321	119039780	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-8644	NM_001164277	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
170593	chr3	186916171	186916580	+	0	NA	Intergenic	Intergenic	-14151	NM_173217	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
64758	chr14	34564221	34564630	+	0	NA	intron (NR_159357, intron 12 of 12)	MER20|DNA|hAT-Charlie	-8036	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
44649	chr11	110301771	110302080	+	0	NA	Intergenic	AluJo|SINE|Alu	-5213	NM_001260493	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
57001	chr12	120575471	120575630	+	0	NA	intron (NM_001330474, intron 14 of 16)	intron (NM_001330474, intron 14 of 16)	5848	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
200220	chr6	131447471	131447630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-125676	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
117770	chr19	29697201	29697650	+	0	NA	Intergenic	Intergenic	17631	NM_001282929	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
76200	chr15	73636071	73636840	+	0	NA	Intergenic	Intergenic	-3066	NM_017455	27020		NM_012428	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
31296	chr10	92591221	92592200	+	0	NA	Intergenic	CpG	-1420	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
171696	chr3	197789621	197789880	+	0	NA	Intergenic	Intergenic	-1476	NM_001363887	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
94388	chr17	28951101	28952000	+	0	NA	promoter-TSS (NM_001290131)	promoter-TSS (NM_001290131)	-32	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
50255	chr12	46256621	46257380	+	0	NA	intron (NM_001278387, intron 1 of 17)	MER41-int|LTR|ERV1	9516	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
73912	chr15	50766601	50767000	+	0	NA	Intergenic	L2a|LINE|L2	-1094	NM_032802	84888		NM_032802	ENSG00000138600	SPPL2A	IMD86|IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
12175	chr1	100360121	100360750	+	0	NA	intron (NM_001319210, intron 2 of 16)	AluSz|SINE|Alu	7929	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
48656	chr12	10430601	10431000	+	0	NA	3' UTR (NM_002260, exon 6 of 6)	3' UTR (NM_002260, exon 6 of 6)	5193	NM_002260	3822		NM_002260	ENSG00000205809	KLRC2	CD159c|NKG2-C|NKG2C	killer cell lectin like receptor C2	protein-coding
91852	chr17	7219371	7220500	+	0	NA	promoter-TSS (NM_000018)	CpG	-3	NM_000018	37		NM_000018	ENSG00000072778	ACADVL	ACAD6|LCACD|VLCAD	acyl-CoA dehydrogenase very long chain	protein-coding
205473	chr7	17307001	17307200	+	0	NA	intron (NM_001621, intron 1 of 10)	intron (NM_001621, intron 1 of 10)	8448	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
128946	chr2	64608101	64608330	+	0	NA	intron (NR_034023, intron 1 of 3)	intron (NR_034023, intron 1 of 3)	903	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
204075	chr7	2063551	2064050	+	0	NA	intron (NM_001304524, intron 10 of 16)	intron (NM_001304524, intron 10 of 16)	25252	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
112821	chr19	7517851	7518300	+	0	NA	intron (NM_018083, intron 1 of 1)	intron (NM_018083, intron 1 of 1)	1972	NM_018083	140467		NM_018083	ENSG00000198816	ZNF358	ZFEND	zinc finger protein 358	protein-coding
130040	chr2	74419671	74420230	+	0	NA	intron (NM_001316764, intron 1 of 2)	AluSx1|SINE|Alu	1669	NM_001316764	388963		NM_001145054	ENSG00000284308	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
163224	chr3	50256451	50256630	+	0	NA	intron (NM_002070, intron 5 of 8)	(GCT)n|Simple_repeat|Simple_repeat	9630	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
54547	chr12	92142701	92143500	+	0	NA	promoter-TSS (NR_046160)	promoter-TSS (NR_046160)	-269	NR_132341	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
40213	chr11	63529621	63530080	+	0	NA	Intergenic	L1M3|LINE|L1	-6958	NM_004585	5920		NM_004585	ENSG00000133321	PLAAT4	HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3	phospholipase A and acyltransferase 4	protein-coding
178465	chr4	148355451	148356130	+	0	NA	intron (NR_148974, intron 2 of 6)	intron (NR_148974, intron 2 of 6)	86624	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
145846	chr20	45883001	45883530	+	0	NA	exon (NM_080603, exon 2 of 2)	exon (NM_080603, exon 2 of 2)	2038	NM_080603	90204		NM_080603	ENSG00000168612	ZSWIM1	C20orf162	zinc finger SWIM-type containing 1	protein-coding
143105	chr20	23357471	23358830	+	0	NA	promoter-TSS (NR_109884)	promoter-TSS (NR_109884)	-23	NR_109884	100505683		NR_109884	ENSG00000232645	LINC01431	-	long intergenic non-protein coding RNA 1431	ncRNA
171668	chr3	197708271	197708430	+	0	NA	intron (NM_014687, intron 2 of 19)	AluSx1|SINE|Alu	28554	NM_014687	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
18092	chr1	160689451	160689950	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK11-int|LTR|ERVK	22122	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
132873	chr2	111125251	111125550	+	0	NA	intron (NM_138626, intron 2 of 2)	intron (NM_138626, intron 2 of 2)	4486	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
180828	chr5	32523771	32523930	+	0	NA	Intergenic	Intergenic	-61707	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
19517	chr1	175338471	175338850	+	0	NA	intron (NM_001328635, intron 18 of 22)	intron (NM_001328635, intron 18 of 22)	-145673	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
35947	chr11	2528201	2528800	+	0	NA	intron (NM_181798, intron 2 of 15)	intron (NM_181798, intron 2 of 15)	67046	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
53191	chr12	62123771	62123930	+	0	NA	intron (NM_178539, intron 1 of 4)	intron (NM_178539, intron 1 of 4)	68989	NM_178539	338811		NM_178539	ENSG00000198673	TAFA2	FAM19A2|TAFA-2	TAFA chemokine like family member 2	protein-coding
21856	chr1	207463301	207464030	+	0	NA	intron (NM_001877, intron 1 of 18)	L1PA10|LINE|L1	9337	NM_001006658	1380		NM_001877	ENSG00000117322	CR2	C3DR|CD21|CR|CVID7|SLEB9	complement C3d receptor 2	protein-coding
74107	chr15	52802421	52802800	+	0	NA	Intergenic	Intergenic	-12274	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
150449	chr21	42466671	42466830	+	0	NA	Intergenic	LTR8B|LTR|ERV1	29474	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
141984	chr20	1388551	1389550	+	0	NA	intron (NM_000801, intron 2 of 4)	L2a|LINE|L2	3911	NR_106929	102465524		NR_106929	ENSG00000284436	MIR6869	hsa-mir-6869	microRNA 6869	ncRNA
196815	chr6	46127751	46128050	+	0	NA	intron (NM_001370650, intron 1 of 6)	intron (NM_001370650, intron 1 of 6)	1919	NM_001370650	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
122483	chr19	49558721	49559200	+	0	NA	exon (NM_015953, exon 5 of 10)	exon (NM_015953, exon 5 of 10)	21596	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
125814	chr2	24082751	24083050	+	0	NA	exon (NM_001206802, exon 2 of 4)	exon (NM_001206802, exon 2 of 4)	1431	NM_001206802	9540		NM_004881	ENSG00000115129	TP53I3	PIG3	tumor protein p53 inducible protein 3	protein-coding
164191	chr3	56818571	56819750	+	0	NA	intron (NM_001289698, intron 2 of 10)	L2a|LINE|L2	-17211	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
128690	chr2	61530251	61530350	+	0	NA	intron (NM_003400, intron 2 of 24)	intron (NM_003400, intron 2 of 24)	8056	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
178572	chr4	151128351	151128650	+	0	NA	intron (NM_001378121, intron 18 of 20)	intron (NM_001378121, intron 18 of 20)	24673	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
59210	chr13	23321051	23322150	+	0	NA	intron (NM_001378244, intron 7 of 7)	MER44B|DNA|TcMar-Tigger	53908	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
7247	chr1	32348571	32349480	+	0	NA	Intergenic	Intergenic	-12792	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
155529	chr22	38698901	38699530	+	0	NA	intron (NM_014876, intron 2 of 4)	intron (NM_014876, intron 2 of 4)	1728	NM_001360236	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
2935	chr1	11804601	11805050	+	0	NA	intron (NM_005957, intron 1 of 11)	intron (NM_005957, intron 1 of 11)	1139	NM_005957	4524		NM_005957	ENSG00000177000	MTHFR	-	methylenetetrahydrofolate reductase	protein-coding
228196	chr9	97704771	97704930	+	0	NA	intron (NR_147055, intron 10 of 10)	intron (NR_147055, intron 10 of 10)	-7441	NR_149094	7507		NM_000380	ENSG00000136936	XPA	XP1|XPAC	XPA, DNA damage recognition and repair factor	protein-coding
183494	chr5	79276271	79276780	+	0	NA	intron (NM_152405, intron 1 of 10)	AluJr|SINE|Alu	40394	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
53898	chr12	71118551	71118650	+	0	NA	Intergenic	L1PA2|LINE|L1	39209	NM_001369760	7103		NM_004616	ENSG00000127324	TSPAN8	CO-029|TM4SF3	tetraspanin 8	protein-coding
173649	chr4	13540201	13540400	+	0	NA	TTS (NM_001189)	TTS (NM_001189)	4208	NM_001189	579		NM_001189	ENSG00000109705	NKX3-2	BAPX1|NKX3.2|NKX3B|SMMD	NK3 homeobox 2	protein-coding
14240	chr1	143235721	143236300	+	0	NA	Intergenic	Intergenic	186582	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
154712	chr22	36432151	36432250	+	0	NA	Intergenic	MIR|SINE|MIR	-44233	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
89433	chr16	88941401	88942650	+	0	NA	promoter-TSS (NM_175931)	promoter-TSS (NM_175931)	-675	NM_175931	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
114792	chr19	13780421	13780880	+	0	NA	Intergenic	AluSg|SINE|Alu	6194	NM_014047	28974		NM_014047	ENSG00000104979	C19orf53	HSPC023|L10K|LYDG10	chromosome 19 open reading frame 53	protein-coding
168368	chr3	141900171	141900950	+	0	NA	intron (NM_001679, intron 1 of 6)	MER21C|LTR|ERVL	23917	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
144054	chr20	33665751	33665850	+	0	NA	intron (NM_031232, intron 5 of 11)	MIRb|SINE|MIR	-1143	NM_001024675	170487		NM_001024675	ENSG00000288649	ACTL10	C20orf134|dJ63M2.2	actin like 10	protein-coding
148914	chr21	9069871	9070030	+	0	NA	intron (NR_038327, intron 3 of 3)	intron (NR_038327, intron 3 of 3)	59811	NR_038327	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
229885	chr9	126507101	126507400	+	0	NA	TTS (NM_033446)	TTS (NM_033446)	-96746	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
31485	chr10	96588551	96588650	+	0	NA	Intergenic	Intergenic	-1588	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
73657	chr15	44715401	44716300	+	0	NA	intron (NM_004048, intron 2 of 3)	intron (NM_004048, intron 2 of 3)	-1994	NR_162102	113218500		NR_162102		MIR10393	-	microRNA 10393	ncRNA
69222	chr14	92737251	92737950	+	0	NA	intron (NM_005606, intron 1 of 13)	LTR36|LTR|ERV1	11027	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
87569	chr16	72124821	72125180	+	0	NA	intron (NM_031293, intron 16 of 20)	intron (NM_031293, intron 16 of 20)	-30622	NM_001142318	54957		NM_017853	ENSG00000140830	TXNL4B	DLP|Dim2	thioredoxin like 4B	protein-coding
216659	chr8	22132251	22132630	+	0	NA	Intergenic	Intergenic	-1388	NM_018411	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
146993	chr20	53387921	53388670	+	0	NA	intron (NM_173485, intron 2 of 2)	intron (NM_173485, intron 2 of 2)	-164475	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
160042	chr3	18437401	18437600	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	1236	NM_001131010	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
96930	chr17	42160271	42160430	+	0	NA	exon (NM_012285, exon 16 of 17)	exon (NM_012285, exon 16 of 17)	-5361	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
126567	chr2	28655571	28655730	+	0	NA	Intergenic	Intergenic	80555	NR_145832	100505774		NR_145832	ENSG00000226833	LOC100505774	-	uncharacterized LOC100505774	ncRNA
157987	chr22	49847071	49847430	+	0	NA	Intergenic	AluJb|SINE|Alu	-6594	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
85845	chr16	57013851	57013990	+	0	NA	intron (NR_169520, intron 1 of 47)	intron (NR_169520, intron 1 of 47)	24363	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
181474	chr5	42749121	42749530	+	0	NA	Intergenic	Intergenic	-7493	NM_001134848	100129792		NM_001134848	ENSG00000198865	CCDC152	CH5400	coiled-coil domain containing 152	protein-coding
144440	chr20	35489351	35489950	+	0	NA	intron (NM_007186, intron 20 of 34)	intron (NM_007186, intron 20 of 34)	29667	NM_001318219	11190		NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1|CRDHL2	centrosomal protein 250	protein-coding
154441	chr22	35356321	35356980	+	0	NA	Intergenic	Intergenic	-19851	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
236028	chrX	55160741	55161980	+	0	NA	promoter-TSS (NM_001166703)	promoter-TSS (NM_001166703)	-165	NM_001166704	90736		NM_138362	ENSG00000182518	VCF2	CXorf44|FAM104B	VCP nuclear cofactor family member 2	protein-coding
203920	chr7	1521351	1522000	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-9027	NM_002360	7975		NM_002360	ENSG00000198517	MAFK	NFE2U|P18	MAF bZIP transcription factor K	protein-coding
238744	chrX	154326101	154326430	+	0	NA	intron (NM_001145933, intron 10 of 12)	intron (NM_001145933, intron 10 of 12)	21095	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
78445	chr15	92821771	92822080	+	0	NA	Intergenic	Intergenic	26441	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
101743	chr17	69569071	69569480	+	0	NA	Intergenic	Intergenic	-24712	NR_109972	101928122		NR_109971	ENSG00000227517	LINC01483	-	long intergenic non-protein coding RNA 1483	ncRNA
222395	chr8	134043551	134044230	+	0	NA	Intergenic	Intergenic	157394	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
216909	chr8	22698571	22699730	+	0	NA	Intergenic	Intergenic	-5670	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
43463	chr11	78081371	78081950	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-1798	NM_004549	4718		NM_004549	ENSG00000151366	NDUFC2	B14.5b|CI-B14.5b|HLC-1|MC1DN36|NADHDH2	NADH:ubiquinone oxidoreductase subunit C2	protein-coding
220093	chr8	94383001	94383400	+	0	NA	intron (NM_012415, intron 11 of 14)	AluSx|SINE|Alu	53744	NM_001205263	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
74309	chr15	58303301	58303500	+	0	NA	Intergenic	MIR3|SINE|MIR	-128591	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
198400	chr6	105809251	105809830	+	0	NA	Intergenic	Intergenic	-276796	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
139251	chr2	219387201	219389150	+	0	NA	promoter-TSS (NM_001319122)	promoter-TSS (NM_001319122)	-263	NM_001319119	23549		NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
160199	chr3	23826451	23826550	+	0	NA	intron (NM_003341, intron 3 of 5)	intron (NM_003341, intron 3 of 5)	16046	NM_001202476	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
46984	chr12	22651	23300	+	0	NA	intron (NR_130745, intron 2 of 10)	intron (NR_130745, intron 2 of 10)	9040	NR_130745	100288778		NR_130745	ENSG00000226210	WASH8P	-	WAS protein family homolog 8, pseudogene	pseudo
57873	chr12	123383501	123384700	+	0	NA	promoter-TSS (NR_136910)	promoter-TSS (NR_136910)	-32	NM_001324505	387893		NM_020382	ENSG00000183955	KMT5A	PR-Set7|PR/SET07|SET07|SET8|SETD8	lysine methyltransferase 5A	protein-coding
87738	chr16	75198021	75198480	+	0	NA	Intergenic	LTR16A|LTR|ERVL	8911	NM_001025200	440387		NM_001025200	ENSG00000168928	CTRB2	-	chymotrypsinogen B2	protein-coding
187445	chr5	142111951	142112250	+	0	NA	intron (NM_030571, intron 1 of 7)	AluSc|SINE|Alu	3321	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
109778	chr19	1139351	1139650	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	-7279	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
52909	chr12	57227421	57228180	+	0	NA	Intergenic	Intergenic	-1911	NM_001166356	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
114547	chr19	12874421	12875000	+	0	NA	TTS (NM_001375)	TTS (NM_001375)	6739	NM_001375	1777		NM_001375	ENSG00000105612	DNASE2	AIPCS|DNASE2A|DNL|DNL2	deoxyribonuclease 2, lysosomal	protein-coding
129513	chr2	69645001	69645600	+	0	NA	intron (NM_001320698, intron 1 of 14)	intron (NM_001320698, intron 1 of 14)	1492	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
1814	chr1	6235201	6236850	+	0	NA	promoter-TSS (NR_103534)	promoter-TSS (NR_103534)	-61	NM_012405	23463		NM_012405	ENSG00000116237	ICMT	HSTE14|MST098|MSTP098|PCCMT|PCMT|PPMT	isoprenylcysteine carboxyl methyltransferase	protein-coding
6362	chr1	27845201	27845400	+	0	NA	intron (NM_138558, intron 5 of 6)	AluY|SINE|Alu	10899	NR_002997	677774		NR_002997	ENSG00000252947	SCARNA1	ACA35	small Cajal body-specific RNA 1	ncRNA
50614	chr12	48681551	48683050	+	0	NA	promoter-TSS (NM_017822)	promoter-TSS (NM_017822)	-62	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
130454	chr2	85437321	85438780	+	0	NA	Intergenic	MIRc|SINE|MIR	19119	NM_201594								
126710	chr2	30170151	30170700	+	0	NA	Intergenic	Intergenic	-17009	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
183006	chr5	72556601	72557100	+	0	NA	promoter-TSS (NR_105008)	promoter-TSS (NR_105008)	-227	NR_105008	102503427		NR_105008		LOC102503427	-	uncharacterized LOC102503427	ncRNA
107675	chr18	49325201	49325400	+	0	NA	intron (NM_001374444, intron 3 of 10)	intron (NM_001374444, intron 3 of 10)	135345	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
50775	chr12	49034501	49035050	+	0	NA	intron (NM_003482, intron 36 of 54)	intron (NM_003482, intron 36 of 54)	-15999	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
37710	chr11	30326151	30327550	+	0	NA	intron (NM_152316, intron 1 of 3)	intron (NM_152316, intron 1 of 3)	3746	NM_152316	120534		NM_152316	ENSG00000152219	ARL14EP	ARF7EP|C11orf46|dJ299F11.1	ADP ribosylation factor like GTPase 14 effector protein	protein-coding
86761	chr16	67660701	67661830	+	0	NA	intron (NM_016948, intron 1 of 2)	CpG-9845	305	NM_001037281	50855		NM_016948	ENSG00000102981	PARD6A	PAR-6A|PAR6|PAR6C|PAR6alpha|TAX40|TIP-40	par-6 family cell polarity regulator alpha	protein-coding
39853	chr11	62380651	62381150	+	0	NA	intron (NM_001083926, intron 4 of 6)	HERVK-int|LTR|ERVK	-38133	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
161407	chr3	41237421	41237680	+	0	NA	intron (NM_001098210, intron 13 of 15)	L2a|LINE|L2	38045	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
58598	chr12	132472301	132473400	+	0	NA	Intergenic	CpG	-17301	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
112243	chr19	5723571	5723730	+	0	NA	intron (NM_152784, intron 1 of 21)	AluY|SINE|Alu	3013	NM_152784	257062		NM_152784	ENSG00000174898	CATSPERD	TMEM146	cation channel sperm associated auxiliary subunit delta	protein-coding
193526	chr6	30589901	30590930	+	0	NA	intron (NM_001090, intron 23 of 23).3	intron (NM_001090, intron 23 of 23).3	6083	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
239475	chrY	56734651	56735030	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-219415	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
112327	chr19	5909771	5910280	+	0	NA	3' UTR (NM_001017921, exon 2 of 2)	3' UTR (NM_001017921, exon 2 of 2)	-4229	NM_004058	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
21021	chr1	202955871	202956230	+	0	NA	intron (NM_001290629, intron 1 of 8)	AluSx1|SINE|Alu	1934	NM_001290553	51094		NM_015999	ENSG00000159346	ADIPOR1	ACDCR1|CGI-45|CGI45|PAQR1|TESBP1A	adiponectin receptor 1	protein-coding
101644	chr17	68250551	68250850	+	0	NA	intron (NR_144443, intron 2 of 6)	intron (NR_144443, intron 2 of 6)	2657	NM_016627	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
25029	chr10	3720651	3720750	+	0	NA	intron (NR_131187, intron 1 of 1)	intron (NR_131187, intron 1 of 1)	64509	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
238643	chrX	153975501	153975880	+	0	NA	intron (NM_003492, intron 1 of 1)	AluSz|SINE|Alu	2936	NM_003492	8269		NM_003492	ENSG00000177854	TMEM187	CXorf12|DXS9878E|ITBA1	transmembrane protein 187	protein-coding
140778	chr2	235594251	235594350	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	-76379	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
116002	chr19	17113051	17114000	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	21290	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
138729	chr2	213233001	213234050	+	0	NA	Intergenic	Intergenic	50684	NR_161186	100130451		NR_144752		SPAG16-DT	-	SPAG16 divergent transcript	ncRNA
208727	chr7	73429401	73429600	+	0	NA	Intergenic	Intergenic	-4278	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
69714	chr14	98201451	98201950	+	0	NA	Intergenic	Intergenic	-223576	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
28666	chr10	60394571	60394750	+	0	NA	intron (NM_001204403, intron 2 of 43)	intron (NM_001204403, intron 2 of 43)	-4785	NM_001320874	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
30584	chr10	80133321	80133580	+	0	NA	intron (NM_001012973, intron 1 of 3)	intron (NM_001012973, intron 1 of 3)	720	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
173676	chr4	15001171	15003400	+	0	NA	promoter-TSS (NM_182485)	promoter-TSS (NM_182485)	-196	NM_001177382	132864		NM_182485	ENSG00000137449	CPEB2	CPE-BP2|CPEB-2|hCPEB-2	cytoplasmic polyadenylation element binding protein 2	protein-coding
114825	chr19	13819271	13820280	+	0	NA	intron (NM_023072, intron 9 of 12)	AluSx|SINE|Alu	16584	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
99048	chr17	48906351	48906650	+	0	NA	intron (NR_135674, intron 1 of 3)	AluSq2|SINE|Alu	-1907	NM_023079	65264		NM_023079	ENSG00000159202	UBE2Z	HOYS7|USE1	ubiquitin conjugating enzyme E2 Z	protein-coding
226734	chr9	75892101	75893100	+	0	NA	intron (NM_006200, intron 1 of 20)	CpG	1927	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
168431	chr3	142514321	142514680	+	0	NA	intron (NM_001184, intron 25 of 46)	AluYh3|SINE|Alu	64233	NM_001354579	545		NM_001184	ENSG00000175054	ATR	FCTCS|FRP1|MEC1|SCKL|SCKL1	ATR serine/threonine kinase	protein-coding
69675	chr14	98137401	98137880	+	0	NA	Intergenic	Intergenic	-159516	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
3243	chr1	13797101	13797900	+	0	NA	intron (NM_012231, intron 8 of 9)	intron (NM_012231, intron 8 of 9)	48085	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
7726	chr1	36121671	36122000	+	0	NA	intron (NM_001294347, intron 1 of 3)	MIR1_Amn|SINE|MIR	3387	NM_005202	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
224436	chr9	15305601	15306500	+	0	NA	intron (NM_152574, intron 1 of 19)	intron (NM_152574, intron 1 of 19)	1310	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
195107	chr6	35616151	35616450	+	0	NA	intron (NM_001145775, intron 6 of 11)	AluSx|SINE|Alu	48489	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
125200	chr2	10256521	10256980	+	0	NA	Intergenic	Intergenic	-46154	NM_002149	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
55084	chr12	96910271	96910850	+	0	NA	intron (NM_152905, intron 3 of 15)	MER20|DNA|hAT-Charlie	3094	NM_001135175	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
202071	chr6	154240451	154240550	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	89581	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
150476	chr21	42627901	42628100	+	0	NA	Intergenic	Intergenic	-12905	NR_131192	101928233		NR_131192	ENSG00000225431	LINC01671	-	long intergenic non-protein coding RNA 1671	ncRNA
228072	chr9	96232401	96232750	+	0	NA	Intergenic	Intergenic	-13888	NR_146524	105376162		NR_146524	ENSG00000232283	HSD17B3-AS1	-	HSD17B3 antisense RNA 1	ncRNA
16349	chr1	154307851	154308150	+	0	NA	Intergenic	LTR8|LTR|ERV1	-13093	NM_080429	89872		NM_080429	ENSG00000143595	AQP10	AQPA_HUMAN	aquaporin 10	protein-coding
112570	chr19	6613651	6614250	+	0	NA	Intergenic	AluY|SINE|Alu	-22800	NM_001252	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
42298	chr11	68449751	68450050	+	0	NA	TTS (NM_001291902)	TTS (NM_001291902)	-10852	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
64278	chr14	23352151	23353250	+	0	NA	promoter-TSS (NM_001289050)	promoter-TSS (NM_001289050)	212	NR_110290	51310		NM_016609	ENSG00000092096	SLC22A17	24p3R|BOCT|BOIT|NGALR|NGALR2|NGALR3|hBOIT	solute carrier family 22 member 17	protein-coding
84184	chr16	29825071	29826050	+	0	NA	intron (NM_005115, intron 1 of 14)	intron (NM_005115, intron 1 of 14)	-4955	NM_001293205	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
235559	chrX	47253551	47253850	+	0	NA	Intergenic	Intergenic	20691	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
105557	chr17	83208271	83208430	+	0	NA	Intergenic	L1ME1|LINE|L1	-18547	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
41866	chr11	67211971	67212480	+	0	NA	intron (NM_012308, intron 6 of 20)	L2c|LINE|L2	-27789	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
174484	chr4	39932821	39933400	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluSq2|SINE|Alu	44801	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
25197	chr10	5682351	5682650	+	0	NA	Intergenic	L1ME3B|LINE|L1	-2338	NM_001321783	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
98662	chr17	47835951	47836400	+	0	NA	intron (NM_033413, intron 6 of 7)	intron (NM_033413, intron 6 of 7)	4505	NM_033413	90506		NM_033413	ENSG00000141294	LRRC46	-	leucine rich repeat containing 46	protein-coding
71567	chr14	106396501	106397730	+	0	NA	Intergenic	Intergenic	-85324	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
226633	chr9	73200651	73201030	+	0	NA	Intergenic	Intergenic	48975	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
145879	chr20	45944871	45945030	+	0	NA	exon (NM_022104, exon 11 of 17)	exon (NM_022104, exon 11 of 17)	10267	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
201629	chr6	149449871	149450230	+	0	NA	3' UTR (NM_207360, exon 6 of 6)	3' UTR (NM_207360, exon 6 of 6)	34964	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
224897	chr9	32511271	32511430	+	0	NA	intron (NM_014314, intron 1 of 17)	L1PA7|LINE|L1	14846	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
40335	chr11	63919871	63920430	+	0	NA	Intergenic	L2b|LINE|L2	-2986	NM_173587	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
131627	chr2	96970601	96971400	+	0	NA	intron (NM_001122646, intron 3 of 16)	L1ME4b|LINE|L1	15580	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
189991	chr5	177460771	177461330	+	0	NA	intron (NM_004395, intron 8 of 13)	AluJb|SINE|Alu	1376	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
29293	chr10	69242001	69242200	+	0	NA	intron (NM_025130, intron 6 of 17)	intron (NM_025130, intron 6 of 17)	-9610	NR_120648	101928994		NR_120648	ENSG00000229261	LOC101928994	-	uncharacterized LOC101928994	ncRNA
106248	chr18	12038471	12039290	+	0	NA	Intergenic	CpG	-54963	NM_001277333	342850		NM_001277333	ENSG00000181626	ANKRD62	DKFZp779B1634	ankyrin repeat domain 62	protein-coding
160924	chr3	36868851	36869450	+	0	NA	intron (NM_014831, intron 8 of 22)	MER5A1|DNA|hAT-Charlie	-46650	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
117123	chr19	19213971	19214400	+	0	NA	intron (NM_004386, intron 1 of 14)	intron (NM_004386, intron 1 of 14)	2227	NM_004386	1463		NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
128979	chr2	64679321	64679980	+	0	NA	Intergenic	Intergenic	-25737	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
11038	chr1	84978701	84979050	+	0	NA	intron (NM_001330647, intron 1 of 14)	MLT2A1|LTR|ERVL	18238	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
220399	chr8	100252871	100253430	+	0	NA	Intergenic	L1M5|LINE|L1	49043	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
142477	chr20	4369771	4369930	+	0	NA	Intergenic	LTR33C|LTR|ERVL	-120563	NM_000678	146		NM_000678	ENSG00000171873	ADRA1D	ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2	adrenoceptor alpha 1D	protein-coding
4936	chr1	23957071	23957230	+	0	NA	Intergenic	Intergenic	-2678	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
10736	chr1	76176151	76176250	+	0	NA	intron (NM_001349108, intron 1 of 3)	AmnSINE2|SINE|tRNA-Deu	101454	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
26574	chr10	21888901	21889300	+	0	NA	intron (NM_022365, intron 7 of 11)	MSTA|LTR|ERVL-MaLR	114630	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
162195	chr3	47004001	47005080	+	0	NA	exon (NM_015175, exon 38 of 54)	exon (NM_015175, exon 38 of 54)	-7002	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
18322	chr1	161180471	161181050	+	0	NA	Intergenic	L2|LINE|L2	-2792	NM_001199873	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
125081	chr2	9691851	9692150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-61003	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
137171	chr2	191117701	191118100	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	33094	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
181102	chr5	36942471	36942900	+	0	NA	intron (NM_133433, intron 1 of 46)	AluSz|SINE|Alu	65916	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
176786	chr4	102508021	102508430	+	0	NA	intron (NM_001382625, intron 1 of 24)	intron (NM_001382625, intron 1 of 24)	-5739	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
68080	chr14	75273851	75273950	+	0	NA	Intergenic	Intergenic	-4928	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
168347	chr3	141882701	141883150	+	0	NA	intron (NM_001679, intron 1 of 6)	L2|LINE|L2	6282	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
123790	chr19	55142151	55142450	+	0	NA	intron (NM_001291774, intron 6 of 13)	AluY|SINE|Alu	6906	NM_001291774	7138		NM_003283	ENSG00000105048	TNNT1	ANM|NEM5|STNT|TNT|TNTS	troponin T1, slow skeletal type	protein-coding
206408	chr7	32297951	32298050	+	0	NA	intron (NM_001322059, intron 1 of 17)	(TC)n|Simple_repeat|Simple_repeat	1328	NM_001191058	5137		NM_005020	ENSG00000154678	PDE1C	DFNA74|Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding
78558	chr15	93005121	93005380	+	0	NA	intron (NM_001271, intron 34 of 38)	L2c|LINE|L2	67906	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
52672	chr12	56345651	56346130	+	0	NA	intron (NM_001385115, intron 22 of 23)	intron (NM_001385115, intron 22 of 23)	7006	NM_016584	51561		NM_016584	ENSG00000110944	IL23A	IL-23|IL-23A|IL23P19|P19|SGRF	interleukin 23 subunit alpha	protein-coding
169933	chr3	178942171	178942350	+	0	NA	Intergenic	L1PA3|LINE|L1	-81855	NR_126561	104797538		NR_126560		KCNMB2-AS1	-	KCNMB2 antisense RNA 1	ncRNA
237695	chrX	124368971	124369130	+	0	NA	intron (NM_002351, intron 2 of 3)	intron (NM_002351, intron 2 of 3)	22487	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
178749	chr4	153153021	153154000	+	0	NA	intron (NM_001375525, intron 1 of 10)	CpG	432	NM_001375515	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
168223	chr3	141300501	141301300	+	0	NA	Intergenic	L1PA5|LINE|L1	-23286	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
161922	chr3	46064851	46066050	+	0	NA	intron (NM_001381860, intron 2 of 3)	intron (NM_001381860, intron 2 of 3)	20394	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
96774	chr17	41778901	41779400	+	0	NA	intron (NM_001352776, intron 1 of 15)	AluSq4|SINE|Alu	6945	NM_001352777	3728		NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PG|PKGB	junction plakoglobin	protein-coding
109495	chr19	824451	824550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2545	NM_001270366	79948		NM_024888	ENSG00000129951	PLPPR3	LPPR3|LPR3|PRG-2|PRG2	phospholipid phosphatase related 3	protein-coding
122158	chr19	48886001	48888500	+	0	NA	intron (NM_003323, intron 8 of 12)	AluSq4|SINE|Alu	11494	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
235385	chrX	45039901	45040350	+	0	NA	intron (NM_001291416, intron 8 of 28)	SVA_E|Retroposon|SVA	160751	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
96615	chr17	40555571	40556500	+	0	NA	intron (NM_001301714, intron 1 of 1)	AluJb|SINE|Alu	4359	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
123461	chr19	54152701	54153330	+	0	NA	intron (NM_014516, intron 16 of 17).8	intron (NM_014516, intron 16 of 17).8	6706	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
8082	chr1	39030751	39030850	+	0	NA	intron (NM_004552, intron 2 of 2)	MIRc|SINE|MIR	4450	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
153002	chr22	23182451	23183380	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	2406	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
180104	chr5	1200071	1200230	+	0	NA	Intergenic	Intergenic	-1445	NM_001003841	340024		NM_001003841	ENSG00000174358	SLC6A19	B0AT1|HND	solute carrier family 6 member 19	protein-coding
155738	chr22	39149951	39150430	+	0	NA	intron (NM_001346743, intron 1 of 5)	intron (NM_001346743, intron 1 of 5)	2490	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
197844	chr6	88780801	88781140	+	0	NA	intron (NM_001286428, intron 10 of 13)	MER20|DNA|hAT-Charlie	182648	NM_003800	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
129132	chr2	65300501	65301800	+	0	NA	Intergenic	Intergenic	65628	NM_001128210	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
143913	chr20	32610901	32611300	+	0	NA	Intergenic	Intergenic	23621	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
171647	chr3	197629901	197630100	+	0	NA	Intergenic	L1ME1|LINE|L1	-2119	NR_003266	220729		NR_003266	ENSG00000291091	SDHAP4	-	SDHA pseudogene 4	pseudo
45132	chr11	117190101	117190700	+	0	NA	intron (NM_001040455, intron 17 of 25)	(CCTGC)n|Simple_repeat|Simple_repeat	-8894	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
182569	chr5	65940551	65940650	+	0	NA	intron (NM_001253697, intron 1 of 25)	SVA_D|Retroposon|SVA	4973	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
152835	chr22	21961221	21961480	+	0	NA	intron (NM_001349845, intron 14 of 18)	intron (NM_001349845, intron 14 of 18)	-8502	NM_014634	9647		NM_014634	ENSG00000100034	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent 1F	protein-coding
225440	chr9	35097371	35097530	+	0	NA	promoter-TSS (NM_001201484)	promoter-TSS (NM_001201484)	-849	NM_152850	84720		NM_032634	ENSG00000165282	PIGO	HPMRS2	phosphatidylinositol glycan anchor biosynthesis class O	protein-coding
33220	chr10	114073751	114074100	+	0	NA	Intergenic	Intergenic	30059	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
48525	chr12	10158471	10159080	+	0	NA	3' UTR (NM_002543, exon 6 of 6)	3' UTR (NM_002543, exon 6 of 6)	-11738	NM_001384894	120939		NM_153022	ENSG00000165685	TMEM52B	C12orf59	transmembrane protein 52B	protein-coding
73410	chr15	42920201	42921780	+	0	NA	promoter-TSS (NM_173500)	promoter-TSS (NM_173500)	-212	NM_173500	146057		NM_173500	ENSG00000128881	TTBK2	SCA11|TTBK	tau tubulin kinase 2	protein-coding
143282	chr20	25256851	25256950	+	0	NA	intron (NM_002862, intron 1 of 19)	intron (NM_002862, intron 1 of 19)	8815	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
188493	chr5	154787871	154788500	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	31031	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
136705	chr2	181145401	181145600	+	0	NA	intron (NR_130784, intron 1 of 4)	LTR12D|LTR|ERV1	21663	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
150765	chr21	43793951	43794450	+	0	NA	intron (NM_003683, intron 4 of 12)	intron (NM_003683, intron 4 of 12)	4623	NM_003683	8568		NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
191875	chr6	15306271	15306500	+	0	NA	intron (NM_001267040, intron 1 of 17)	AluSq2|SINE|Alu	57530	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
140495	chr2	233195421	233196150	+	0	NA	intron (NM_001017915, intron 24 of 26).2	AluSz6|SINE|Alu	-55786	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
220520	chr8	100679551	100680130	+	0	NA	Intergenic	L2b|LINE|L2	23184	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
106139	chr18	9478071	9478230	+	0	NA	intron (NM_006788, intron 1 of 9)	intron (NM_006788, intron 1 of 9)	2637	NM_006788	10928		NM_006788	ENSG00000017797	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
182680	chr5	67416521	67416780	+	0	NA	Intergenic	Intergenic	-219851	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
191340	chr6	7117171	7117950	+	0	NA	intron (NM_001003698, intron 1 of 11)	AluSq2|SINE|Alu	9599	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
236137	chrX	63189821	63190080	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	161382	NM_001012968	139886		NM_001012968	ENSG00000186767	SPIN4	LJBS|TDRD28	spindlin family member 4	protein-coding
53697	chr12	68530071	68530630	+	0	NA	Intergenic	Intergenic	-78866	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
74601	chr15	60577271	60578130	+	0	NA	intron (NM_134260, intron 1 of 11)	Charlie1a|DNA|hAT-Charlie	14826	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
10532	chr1	66956121	66956700	+	0	NA	intron (NM_001077702, intron 5 of 15)	AluJb|SINE|Alu	26154	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
121123	chr19	46000651	46001530	+	0	NA	intron (NM_001267723, intron 1 of 13)	intron (NM_001267723, intron 1 of 13)	5623	NM_001267723	729440		NM_001080402	ENSG00000104983	CCDC61	VFL3|hVFL3	coiled-coil domain containing 61	protein-coding
160177	chr3	23442721	23443050	+	0	NA	intron (NM_001370225, intron 3 of 5)	intron (NM_001370225, intron 3 of 5)	239558	NM_001370228	7325		NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
79664	chr16	1208121	1208630	+	0	NA	intron (NM_021098, intron 16 of 34)	intron (NM_021098, intron 16 of 34)	16893	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
115163	chr19	14420871	14421030	+	0	NA	Intergenic	AluSp|SINE|Alu	-1567	NR_046366	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
176582	chr4	98705271	98705430	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	46448	NR_148380	105377342		NR_148380		TSPAN5-DT	-	TSPAN5 divergent transcript	ncRNA
56380	chr12	113173451	113173550	+	0	NA	intron (NM_024072, intron 10 of 19)	intron (NM_024072, intron 10 of 19)	11978	NM_024072	79039		NM_024072	ENSG00000123064	DDX54	DP97	DEAD-box helicase 54	protein-coding
145897	chr20	45960421	45961250	+	0	NA	intron (NM_022095, intron 11 of 27)	intron (NM_022095, intron 11 of 27)	11368	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
38269	chr11	39368351	39368450	+	0	NA	Intergenic	Intergenic	719542	NR_120553	101928536		NR_120553	ENSG00000254562	LINC01493	-	long intergenic non-protein coding RNA 1493	ncRNA
212403	chr7	128123571	128123730	+	0	NA	Intergenic	Intergenic	41789	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
70486	chr14	102085151	102085900	+	0	NA	intron (NM_001017963, intron 4 of 11)	intron (NM_001017963, intron 4 of 11)	1519	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
52225	chr12	54389551	54389650	+	0	NA	intron (NM_001130968, intron 1 of 6)	intron (NM_001130968, intron 1 of 6)	1698	NM_001130968	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
150839	chr21	44043451	44043750	+	0	NA	intron (NM_003274, intron 3 of 22)	MLT1G3|LTR|ERVL-MaLR	-30724	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
180565	chr5	14703601	14704080	+	0	NA	TTS (NM_054027)	TTS (NM_054027)	-8854	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
131452	chr2	96334551	96334650	+	0	NA	Intergenic	Intergenic	-1166	NM_001281710	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
151106	chr21	44864271	44864630	+	0	NA	intron (NM_004339, intron 2 of 5)	AluSq4|SINE|Alu	9240	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
32667	chr10	103890121	103890530	+	0	NA	intron (NM_024928, intron 8 of 9)	MIRc|SINE|MIR	27859	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
86296	chr16	58627551	58627650	+	0	NA	intron (NM_206999, intron 1 of 30)	intron (NM_206999, intron 1 of 30)	2226	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
87493	chr16	71803951	71804050	+	0	NA	intron (NM_001128, intron 1 of 22)	intron (NM_001128, intron 1 of 22)	4834	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
224879	chr9	31630171	31630330	+	0	NA	Intergenic	L1MEc|LINE|L1	-248760	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
220377	chr8	100145171	100146060	+	0	NA	non-coding (NR_036491, exon 1 of 5)	non-coding (NR_036491, exon 1 of 5)	202	NR_036491	286151		NM_001029860	ENSG00000156509	FBXO43	EMI2|ERP1|FBX43|OOMD12|OZEMA12|SPGF64	F-box protein 43	protein-coding
142499	chr20	4726421	4727340	+	0	NA	3' UTR (NM_012409, exon 2 of 2)	3' UTR (NM_012409, exon 2 of 2)	4971	NM_012409	23627		NM_012409	ENSG00000171864	PRND	DOPPEL|DPL|PrPLP|dJ1068H6.4	prion like protein doppel	protein-coding
60477	chr13	41193201	41193430	+	0	NA	exon (NM_032138, exon 1 of 1)	exon (NM_032138, exon 1 of 1)	1254	NM_032138	84078		NM_032138	ENSG00000120696	KBTBD7	-	kelch repeat and BTB domain containing 7	protein-coding
152769	chr22	21778621	21778880	+	0	NA	intron (NM_138957, intron 6 of 7)	intron (NM_138957, intron 6 of 7)	-42956	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
128997	chr2	64769951	64770250	+	0	NA	Intergenic	Intergenic	93531	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
207191	chr7	43627071	43627230	+	0	NA	3' UTR (NM_004760, exon 7 of 7)	3' UTR (NM_004760, exon 7 of 7)	44042	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
100642	chr17	63688301	63688880	+	0	NA	exon (NM_203351, exon 10 of 17)	exon (NM_203351, exon 10 of 17)	11535	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
135215	chr2	159175251	159175430	+	0	NA	intron (NM_001350064, intron 12 of 26)	intron (NM_001350064, intron 12 of 26)	-11495	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
148563	chr20	64279851	64280230	+	0	NA	Intergenic	Intergenic	-10345	NR_040415	107126285		NR_040415		SEPTIN14P20	C20orf69|LINC00266-1|NCRNA00266|NCRNA00266-1|RBRP|SEPT14P20|bA476I15.3	septin 14 pseudogene 20	pseudo
154337	chr22	32204701	32205480	+	0	NA	promoter-TSS (NM_001159546)	promoter-TSS (NM_001159546)	-25	NR_149072	110806273		NR_149072	ENSG00000242082	SLC5A4-AS1	-	SLC5A4 antisense RNA 1	ncRNA
43599	chr11	83166321	83166650	+	0	NA	exon (NM_001346415, exon 5 of 16)	exon (NM_001346415, exon 5 of 16)	9354	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
11255	chr1	89020051	89020600	+	0	NA	intron (NM_001319179, intron 2 of 11)	HY1|scRNA|scRNA	2541	NM_018284	2635		NM_018284	ENSG00000117226	GBP3	-	guanylate binding protein 3	protein-coding
107941	chr18	58043251	58044980	+	0	NA	promoter-TSS (NM_001144967)	promoter-TSS (NM_001144967)	-111	NM_001144967	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
185538	chr5	131350571	131350730	+	0	NA	intron (NM_001375633, intron 2 of 5)	(AT)n|Simple_repeat|Simple_repeat	86597	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
49081	chr12	14432151	14432450	+	0	NA	intron (NM_001286515, intron 2 of 12)	Tigger20a|DNA|TcMar-Tigger	47019	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
161044	chr3	38008271	38009130	+	0	NA	intron (NM_006225, intron 11 of 14)	intron (NM_006225, intron 11 of 14)	14562	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
180472	chr5	11234551	11234950	+	0	NA	intron (NM_001332, intron 10 of 21)	intron (NM_001332, intron 10 of 21)	354167	NM_001288715	1501		NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
228147	chr9	96876671	96876830	+	0	NA	Intergenic	AluSx1|SINE|Alu	7850	NR_038890	100132781		NR_038890		LOC100132781	-	cyclin Y like 1 pseudogene	pseudo
32378	chr10	102407601	102408400	+	0	NA	intron (NM_001270965, intron 11 of 17)	intron (NM_001270965, intron 11 of 17)	1277	NR_073110	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
172271	chr4	1434471	1434700	+	0	NA	Intergenic	Intergenic	-28143	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
4201	chr1	19447051	19447550	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	36995	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
193722	chr6	31198801	31200430	+	0	NA	intron (NR_026791, intron 1 of 1)	intron (NR_026791, intron 1 of 1)	1855	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
218925	chr8	60865201	60866250	+	0	NA	exon (NM_017780, exon 38 of 38)	exon (NM_017780, exon 38 of 38)	45073	NR_168431	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
16641	chr1	155131351	155131850	+	0	NA	exon (NM_004428, exon 2 of 5)	exon (NM_004428, exon 2 of 5)	3724	NM_004428	1942		NM_004428	ENSG00000169242	EFNA1	B61|ECKLG|EFL1|EPLG1|GMAN|LERK-1|LERK1|TNFAIP4	ephrin A1	protein-coding
234489	chrX	18674721	18676300	+	0	NA	5' UTR (NM_001378382, exon 1 of 21)	5' UTR (NM_001378382, exon 1 of 21)	443	NM_001378382	5475		NM_006240	ENSG00000086717	PPEF1	PP7|PPEF|PPP7C|PPP7CA	protein phosphatase with EF-hand domain 1	protein-coding
145436	chr20	43469771	43470450	+	0	NA	Intergenic	AluY|SINE|Alu	12214	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
104487	chr17	81129821	81130280	+	0	NA	intron (NM_001080395, intron 3 of 13)	intron (NM_001080395, intron 3 of 13)	1898	NM_004920	9625		NM_004920	ENSG00000181409	AATK	AATYK|AATYK1|LMR1|LMTK1|PPP1R77|p35BP	apoptosis associated tyrosine kinase	protein-coding
167075	chr3	126994671	126994830	+	0	NA	intron (NM_032242, intron 2 of 30)	intron (NM_032242, intron 2 of 30)	6156	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
27315	chr10	30497751	30498430	+	0	NA	Intergenic	Intergenic	63444	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
149642	chr21	33544371	33544950	+	0	NA	intron (NM_032195, intron 1 of 6)	L1M5|LINE|L1	1622	NR_103797	6651		NM_003103	ENSG00000159140	SON	BASS1|C21orf50|DBP-5|NREBP|SON3|TOKIMS	SON DNA and RNA binding protein	protein-coding
80701	chr16	3063551	3064030	+	0	NA	Intergenic	L1MB8|LINE|L1	-1613	NM_001369591	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
219235	chr8	66922301	66922650	+	0	NA	promoter-TSS (NR_002598)	promoter-TSS (NR_002598)	74	NR_002598	641648		NR_002598	ENSG00000254341	SNORD87	HBII-276|U87	small nucleolar RNA, C/D box 87	snoRNA
199012	chr6	111088101	111089000	+	0	NA	intron (NM_018593, intron 1 of 5)	intron (NM_018593, intron 1 of 5)	1047	NM_018593	117247		NM_018593	ENSG00000112394	SLC16A10	MCT10|PRO0813|TAT1	solute carrier family 16 member 10	protein-coding
132091	chr2	101311001	101311880	+	0	NA	Intergenic	LTR26C|LTR|ERV1	1990	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
175554	chr4	75513951	75515980	+	0	NA	promoter-TSS (NM_001278538)	promoter-TSS (NM_001278538)	492	NM_001317791	152815		NM_144721	ENSG00000174796	THAP6	-	THAP domain containing 6	protein-coding
75578	chr15	67077071	67077230	+	0	NA	intron (NM_005902, intron 1 of 8)	MER115|DNA|hAT-Tip100	11548	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
129964	chr2	73977221	73977680	+	0	NA	intron (NR_104030, intron 1 of 1)	intron (NR_104030, intron 1 of 1)	3989	NR_104030	100874048		NR_104029		DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
139087	chr2	218877651	218877750	+	0	NA	Intergenic	Intergenic	-3152	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
209089	chr7	74853201	74853600	+	0	NA	Intergenic	AluJr|SINE|Alu	-1824	NM_173537	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
4987	chr1	24317101	24317300	+	0	NA	Intergenic	Intergenic	-2157	NM_198174	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
140213	chr2	231713401	231714660	+	0	NA	TTS (NR_036052).4	TTS (NR_036052).4	716	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
11614	chr1	91708571	91708730	+	0	NA	intron (NR_036634, intron 15 of 17)	intron (NR_036634, intron 15 of 17)	177501	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
181285	chr5	39460921	39461380	+	0	NA	Intergenic	Intergenic	-35917	NM_001244871	1601		NM_001343	ENSG00000153071	DAB2	DOC-2|DOC2	DAB adaptor protein 2	protein-coding
62511	chr13	99476871	99477180	+	0	NA	Intergenic	Intergenic	22281	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
77914	chr15	89242401	89242600	+	0	NA	Intergenic	Intergenic	-1479	NM_001113378	55215		NM_018193	ENSG00000140525	FANCI	KIAA1794	FA complementation group I	protein-coding
140982	chr2	237980801	237981300	+	0	NA	intron (NR_103500, intron 3 of 10)	intron (NR_103500, intron 3 of 10)	12257	NM_001278305	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
184133	chr5	94693021	94693900	+	0	NA	intron (NM_032290, intron 20 of 20)	intron (NM_032290, intron 20 of 20)	74791	NM_032290	84250		NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding
24224	chr1	236143301	236143750	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	986	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
236269	chrX	66015321	66016130	+	0	NA	Intergenic	Intergenic	-3145	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
11775	chr1	92472721	92472980	+	0	NA	TTS (NM_001127215)	TTS (NM_001127215)	11104	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
106267	chr18	12406201	12406700	+	0	NA	Intergenic	Intergenic	-1479	NM_006553	10650		NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
230481	chr9	128222971	128223400	+	0	NA	intron (NM_001288739, intron 9 of 21)	intron (NM_001288739, intron 9 of 21)	-18963	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
119661	chr19	40828651	40828750	+	0	NA	Intergenic	AluJo|SINE|Alu	-17600	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
44341	chr11	102420751	102420850	+	0	NA	intron (NM_052932, intron 2 of 4)	AluSz|SINE|Alu	31965	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
239330	chrY	18992871	18993030	+	0	NA	intron (NR_125733, intron 2 of 4)	CpG	83053	NR_125736	83869		NM_031932	ENSG00000176728	TTTY14	CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14	testis expressed transcript, Y-linked 14	ncRNA
41376	chr11	65984971	65985530	+	0	NA	Intergenic	L1MC5a|LINE|L1	-16829	NM_001143985	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
226082	chr9	62663101	62663500	+	0	NA	Intergenic	L1P4b|LINE|L1	130738	NR_147619	103908604		NR_147619		FAM88F	-	family with sequence similarity 88 member F	ncRNA
6958	chr1	31766051	31766330	+	0	NA	Intergenic	Intergenic	-1850	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
3071	chr1	12180751	12181450	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	-10613	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
170020	chr3	180942401	180942800	+	0	NA	intron (NM_001013438, intron 3 of 15)	intron (NM_001013438, intron 3 of 15)	29929	NM_001363882	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
161450	chr3	42117051	42117350	+	0	NA	intron (NM_001042646, intron 1 of 15)	intron (NM_001042646, intron 1 of 15)	25843	NM_001349246	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
48899	chr12	12547421	12547980	+	0	NA	intron (NM_030640, intron 1 of 6)	intron (NM_030640, intron 1 of 6)	15163	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
188215	chr5	150710251	150710500	+	0	NA	3' UTR (NM_001135644, exon 13 of 13)	3' UTR (NM_001135644, exon 13 of 13)	-9313	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
109213	chr19	472471	473030	+	0	NA	promoter-TSS (NM_001385600)	promoter-TSS (NM_001385600)	-119	NM_001385600	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
113058	chr19	8180621	8181280	+	0	NA	Intergenic	AluSz|SINE|Alu	-28420	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
83478	chr16	27393401	27393800	+	0	NA	Intergenic	L1MB8|LINE|L1	-8574	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
109982	chr19	1406621	1408200	+	0	NA	promoter-TSS (NM_001352034)	promoter-TSS (NM_001352034)	-176	NM_170711	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
145391	chr20	41357901	41358100	+	0	NA	exon (NM_001301860, exon 17 of 20)	exon (NM_001301860, exon 17 of 20)	8818	NM_052846	90187		NM_052846	ENSG00000183798	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
89798	chr16	89506801	89509400	+	0	NA	promoter-TSS (NM_001363850)	promoter-TSS (NM_001363850)	-288	NM_001363850	6687		NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7 matrix AAA peptidase subunit, paraplegin	protein-coding
119805	chr19	41337071	41337500	+	0	NA	intron (NM_000660, intron 5 of 6)	AluSq2|SINE|Alu	16637	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
66528	chr14	61752751	61753180	+	0	NA	Intergenic	Intergenic	-1868	NR_144368	105370526		NR_144368	ENSG00000258667	HIF1A-AS3	HIFAL	HIF1A antisense RNA 3	ncRNA
123338	chr19	53824351	53824450	+	0	NA	promoter-TSS (NM_001277129)	promoter-TSS (NM_001277129)	3	NM_001277129	91662		NM_033297	ENSG00000142405	NLRP12	CLR19.3|FCAS2|NALP12|PAN6|PYPAF7|RNO|RNO2	NLR family pyrin domain containing 12	protein-coding
180	chr1	668871	669230	+	0	NA	Intergenic	L1PA8|LINE|L1	17604	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
138538	chr2	207526501	207527030	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-3197	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
144830	chr20	36845951	36846430	+	0	NA	intron (NM_080627, intron 1 of 14)	AluSx|SINE|Alu	13683	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
198457	chr6	106143521	106144350	+	0	NA	Intergenic	Intergenic	44994	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
12416	chr1	101346501	101346930	+	0	NA	intron (NR_126402, intron 3 of 4)	L1P4|LINE|L1	22878	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
157680	chr22	46292551	46292650	+	0	NA	intron (NM_017931, intron 13 of 13)	intron (NM_017931, intron 13 of 13)	4060	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
147681	chr20	62309221	62309480	+	0	NA	TTS (NM_007002)	TTS (NM_007002)	6353	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
178776	chr4	153439071	153440180	+	0	NA	Intergenic	Intergenic	-26721	NM_015196	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
239284	chrY	13776211	13776350	+	0	NA	Intergenic	L1PA2|LINE|L1	72381	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
16010	chr1	152036501	152037630	+	0	NA	promoter-TSS (NM_005620)	promoter-TSS (NM_005620)	-61	NM_005620	6282		NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
179853	chr5	524321	525050	+	0	NA	promoter-TSS (NM_004174)	promoter-TSS (NM_004174)	-236	NM_004174	6550		NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
154831	chr22	37063601	37064350	+	0	NA	TTS (NM_024681)	TTS (NM_024681)	12239	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
203627	chr7	959721	960180	+	0	NA	Intergenic	AluJr|SINE|Alu	-4543	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
133629	chr2	126762101	126762780	+	0	NA	Intergenic	Intergenic	106282	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
115310	chr19	14776501	14777230	+	0	NA	promoter-TSS (NM_001271052)	promoter-TSS (NM_001271052)	62	NM_001271052	30817		NM_013447	ENSG00000127507	ADGRE2	CD312|CD97|EMR2|VBU	adhesion G protein-coupled receptor E2	protein-coding
155390	chr22	38316401	38318380	+	0	NA	promoter-TSS (NM_152221)	promoter-TSS (NM_152221)	43	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
154516	chr22	36022101	36022500	+	0	NA	intron (NM_001349999, intron 1 of 13)	intron (NM_001349999, intron 1 of 13)	6524	NM_001082578	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
220871	chr8	103416371	103416800	+	0	NA	intron (NM_015420, intron 1 of 10)	L2c|LINE|L2	1199	NM_015420	25879		NM_015420	ENSG00000164934	DCAF13	GM83|HSPC064|Sof1|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
114596	chr19	12948001	12949580	+	0	NA	exon (NM_001270362, exon 5 of 9)	exon (NM_001270362, exon 5 of 9)	2928	NM_005053	5886		NM_005053	ENSG00000179262	RAD23A	HHR23A|HR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding
206064	chr7	27164001	27164200	+	0	NA	intron (NR_037940, intron 2 of 2)	intron (NR_037940, intron 2 of 2)	1437	NM_152739	3205		NM_002142	ENSG00000078399	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding
216898	chr8	22685451	22685950	+	0	NA	Intergenic	Intergenic	6664	NM_001199880	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
126989	chr2	36688731	36688930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7860	NM_001177969	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
187835	chr5	146894071	146894230	+	0	NA	intron (NM_001271900, intron 2 of 10)	L2c|LINE|L2	-15223	NR_073527	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
157569	chr22	45970801	45971000	+	0	NA	intron (NM_058238, intron 1 of 3)	CpG	6262	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
46943	chr11	134402171	134402930	+	0	NA	intron (NM_054025, intron 1 of 5)	intron (NM_054025, intron 1 of 5)	9368	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
25691	chr10	8857571	8858130	+	0	NA	Intergenic	Intergenic	-40139	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
21699	chr1	206732051	206732780	+	0	NA	3' UTR (NM_004759, exon 10 of 10)	3' UTR (NM_004759, exon 10 of 10)	38188	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
35538	chr11	1583821	1584080	+	0	NA	TTS (NM_001005922).3	TTS (NM_001005922).3	1333	NM_001005922	387264		NM_001005922	ENSG00000205869	KRTAP5-1	KRN1L|KRTAP5.1	keratin associated protein 5-1	protein-coding
26436	chr10	17244271	17244830	+	0	NA	Intergenic	Tigger5b|DNA|TcMar-Tigger	-14565	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
84143	chr16	29736221	29736480	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	9640	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
27233	chr10	29445321	29445700	+	0	NA	intron (NR_110927, intron 2 of 2)	MSTA|LTR|ERVL-MaLR	35267	NR_110928	102724316		NR_003930	ENSG00000291093	SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
18104	chr1	160699351	160699450	+	0	NA	intron (NM_001256030, intron 1 of 2)	LTR5|LTR|ERVK	12422	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
187769	chr5	145856471	145856630	+	0	NA	Intergenic	Intergenic	16418	NM_001080516	643226		NM_001080516	ENSG00000204928	GRXCR2	DFNB101	glutaredoxin and cysteine rich domain containing 2	protein-coding
233743	chrX	1382921	1383350	+	0	NA	TTS (NM_002183).2	TTS (NM_002183).2	8978	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
24712	chr1	247348971	247349330	+	0	NA	intron (NR_168399, intron 1 of 2)	AluSg4|SINE|Alu	17096	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
193895	chr6	31614851	31614950	+	0	NA	promoter-TSS (NM_001623).6	promoter-TSS (NM_001623).6	-334	NM_001318970	199		NM_001623	ENSG00000204472	AIF1	AIF-1|IBA1|IRT-1|IRT1	allograft inflammatory factor 1	protein-coding
200118	chr6	130211501	130212030	+	0	NA	intron (NM_001258275, intron 6 of 13)	MER4B|LTR|ERV1	4120	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
131920	chr2	98869171	98869330	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	66975	NM_207362	343990		NM_207362	ENSG00000196872	CRACDL	C2orf55|KIAA1211L	CRACD like	protein-coding
73858	chr15	50181821	50182780	+	0	NA	5' UTR (NM_001159629, exon 1 of 9)	5' UTR (NM_001159629, exon 1 of 9)	104	NM_003645	11001		NM_003645	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	solute carrier family 27 member 2	protein-coding
72338	chr15	31317071	31317230	+	0	NA	Intergenic	Intergenic	-9685	NM_001302461	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
91918	chr17	7317871	7318100	+	0	NA	intron (NM_032442, intron 25 of 28)	intron (NM_032442, intron 25 of 28)	-2625	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
184716	chr5	109404251	109405000	+	0	NA	intron (NM_014819, intron 1 of 9)	MLT1A0|LTR|ERVL-MaLR	5349	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
50038	chr12	43835421	43836550	+	0	NA	promoter-TSS (NM_032256)	promoter-TSS (NM_032256)	-96	NM_032256	84216		NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
69503	chr14	95533171	95533790	+	0	NA	non-coding (NR_003002, exon 1 of 1)	non-coding (NR_003002, exon 1 of 1)	149	NR_003002	677768		NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA
51736	chr12	53228121	53228380	+	0	NA	intron (NM_000966, intron 2 of 9)	MIR|SINE|MIR	3959	NM_000966	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
215001	chr7	152364771	152365130	+	0	NA	intron (NM_170606, intron 1 of 58)	(AC)n|Simple_repeat|Simple_repeat	71053	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
225054	chr9	33202271	33202930	+	0	NA	Intergenic	Intergenic	34741	NR_108108	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
186414	chr5	135542101	135542500	+	0	NA	Intergenic	Intergenic	-6336	NM_006161	4762		NM_006161	ENSG00000181965	NEUROG1	AKA|CCDDRD|Math4C|NEUROD3|bHLHa6|ngn1	neurogenin 1	protein-coding
105500	chr17	83095301	83096150	+	0	NA	TTS (NM_001363853)	TTS (NM_001363853)	14579	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
215334	chr7	157362651	157363100	+	0	NA	intron (NM_001363676, intron 2 of 6)	AluJr|SINE|Alu	25871	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
216866	chr8	22624051	22624150	+	0	NA	intron (NR_156436, intron 7 of 9)	intron (NR_156436, intron 7 of 9)	18109	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
35769	chr11	2158401	2159200	+	0	NA	TTS (NM_001185098)	TTS (NM_001185098)	2409	NM_001185097	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
31761	chr10	97914421	97915130	+	0	NA	intron (NM_001206528, intron 5 of 14)	intron (NM_001206528, intron 5 of 14)	-38878	NR_162124	113839520		NR_162124		MIR3085	-	microRNA 3085	ncRNA
73151	chr15	41424051	41424350	+	0	NA	intron (NM_015138, intron 1 of 17)	intron (NM_015138, intron 1 of 17)	7096	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
114568	chr19	12900001	12900800	+	0	NA	TTS (NR_102317)	TTS (NR_102317)	9240	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
22030	chr1	210333751	210333850	+	0	NA	intron (NM_001170580, intron 1 of 11).2	AluSz6|SINE|Alu	4434	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
30543	chr10	79537071	79537630	+	0	NA	Intergenic	Intergenic	22521	NM_001320814	729238		NM_001098668	ENSG00000185303	SFTPA2	COLEC5|ILD2|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
174275	chr4	38179421	38180200	+	0	NA	Intergenic	Intergenic	59856	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
54289	chr12	89280901	89281630	+	0	NA	Intergenic	Intergenic	71236	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
87075	chr16	68400951	68401250	+	0	NA	intron (NM_018667, intron 1 of 8)	MIRb|SINE|MIR	47408	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
195150	chr6	35719851	35720550	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	8383	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
125257	chr2	10430421	10431150	+	0	NA	Intergenic	AluY|SINE|Alu	16064	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
233644	chrX	729801	730000	+	0	NA	Intergenic	Intergenic	105556	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
96432	chr17	40187251	40187450	+	0	NA	intron (NM_001303534, intron 4 of 14)	intron (NM_001303534, intron 4 of 14)	-6247	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
134095	chr2	131801001	131801200	+	0	NA	non-coding (NR_161366, exon 2 of 3).2	non-coding (NR_161366, exon 2 of 3).2	561	NR_161366	408029		NR_161366	ENSG00000290618	CDRT15P3	C2orf27B	CDRT15 pseudogene 3	ncRNA
57363	chr12	121784351	121784900	+	0	NA	intron (NM_019034, intron 2 of 4)	MIRc|SINE|MIR	9063	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
168841	chr3	152263701	152264280	+	0	NA	non-coding (NR_027038, exon 2 of 2)	non-coding (NR_027038, exon 2 of 2)	-4939	NM_001376823	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
135493	chr2	161905601	161905800	+	0	NA	exon (NM_001354441, exon 16 of 28)	exon (NM_001354441, exon 16 of 28)	168515	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
70260	chr14	101711201	101714100	+	0	NA	Intergenic	Intergenic	-17787	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
43825	chr11	86802471	86803030	+	0	NA	intron (NR_120591, intron 1 of 4)	intron (NR_120591, intron 1 of 4)	2208	NM_001293179	11098		NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	serine protease 23	protein-coding
94716	chr17	30713651	30714030	+	0	NA	intron (NR_144394, intron 1 of 8)	L2a|LINE|L2	4232	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
209383	chr7	76308951	76309780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	6692	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
224846	chr9	27576121	27576380	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	-2384	NM_001256054	203228		NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1	C9orf72-SMCR8 complex subunit	protein-coding
163409	chr3	50545251	50545950	+	0	NA	Intergenic	AluSz|SINE|Alu	22147	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
85510	chr16	50770551	50770850	+	0	NA	intron (NM_015247, intron 7 of 19)	AluSz|SINE|Alu	28285	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
86485	chr16	66998601	66998800	+	0	NA	intron (NM_173815, intron 2 of 11)	AluSg|SINE|Alu	-1839	NM_001190202	283848		NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
126548	chr2	28607971	28608130	+	0	NA	intron (NM_153021, intron 43 of 57)	intron (NM_153021, intron 43 of 57)	41693	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
54938	chr12	96214701	96215730	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	20840	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
55043	chr12	96397071	96397500	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	3154	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
215280	chr7	157113751	157113850	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-25126	NM_014671	9690		NM_014671	ENSG00000009335	UBE3C	HECTH2|NDSMBA|NEDSMBA|RAUL	ubiquitin protein ligase E3C	protein-coding
202893	chr6	159989021	159989530	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	18389	NR_047511	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
70295	chr14	101770121	101770380	+	0	NA	intron (NM_001352915, intron 2 of 14)	intron (NM_001352915, intron 2 of 14)	7880	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
96254	chr17	39844871	39845030	+	0	NA	intron (NM_183231, intron 1 of 5)	L2a|LINE|L2	19238	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
139314	chr2	219537521	219537780	+	0	NA	exon (NM_018674, exon 9 of 10)	exon (NM_018674, exon 9 of 10)	5447	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
121770	chr19	47765621	47766800	+	0	NA	intron (NR_132382, intron 2 of 2)	intron (NR_132382, intron 2 of 2)	2630	NR_132382	106144593		NR_132382	ENSG00000269656	NOP53-AS1	GLTSCR2-AS1	NOP53 antisense RNA 1	ncRNA
103592	chr17	78711771	78712400	+	0	NA	intron (NM_017456, intron 1 of 12)	AluJb|SINE|Alu	4947	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
85973	chr16	57314201	57314680	+	0	NA	Intergenic	Intergenic	-29768	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
97722	chr17	44357671	44358480	+	0	NA	intron (NM_198475, intron 3 of 7)	intron (NM_198475, intron 3 of 7)	5778	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
132391	chr2	105782021	105782480	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	37187	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
199312	chr6	112163151	112164080	+	0	NA	intron (NM_002290, intron 13 of 38)	L2a|LINE|L2	-72981	NR_121193	101927640		NR_121193		LAMA4-AS1	-	LAMA4 antisense RNA 1	ncRNA
80731	chr16	3123621	3125300	+	0	NA	Intergenic	CpG	-8862	NR_024166	81854		NM_030970		ZNF205-AS1	-	ZNF205 antisense RNA 1	ncRNA
71218	chr14	105153601	105154430	+	0	NA	intron (NM_002226, intron 5 of 25)	intron (NM_002226, intron 5 of 25)	-3151	NR_106823	102465458		NR_106823	ENSG00000273778	MIR6765	hsa-mir-6765	microRNA 6765	ncRNA
167840	chr3	133895521	133896100	+	0	NA	promoter-TSS (NM_001363953)	promoter-TSS (NM_001363953)	37	NM_001363953	51560		NM_016577	ENSG00000154917	RAB6B	-	RAB6B, member RAS oncogene family	protein-coding
83344	chr16	25030251	25030700	+	0	NA	Intergenic	Intergenic	-1266	NR_038379	554206		NR_038379	ENSG00000291179	LOC554206	-	leucine carboxyl methyltransferase 1 pseudogene	pseudo
94060	chr17	27388171	27388550	+	0	NA	Intergenic	L1MB8|LINE|L1	-29645	NR_033892	440419		NR_033892	ENSG00000290422	TBC1D3P5	-	TBC1 domain family member 3 pseudogene 5	pseudo
167375	chr3	128793021	128793280	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSc8|SINE|Alu	-53658	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
98541	chr17	47662051	47662730	+	0	NA	intron (NM_002265, intron 6 of 21)	AluJb|SINE|Alu	11325	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
17050	chr1	156089651	156090100	+	0	NA	intron (NM_001282625, intron 2 of 12)	intron (NM_001282625, intron 2 of 12)	7302	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
31428	chr10	95757901	95758580	+	0	NA	intron (NR_038444, intron 5 of 5)	MIR|SINE|MIR	2077	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
229255	chr9	116701571	116702000	+	0	NA	TTS (NM_012210)	TTS (NM_012210)	14216	NM_001379050	22954		NM_012210	ENSG00000119401	TRIM32	BBS11|HT2A|LGMD2H|LGMDR8|TATIP	tripartite motif containing 32	protein-coding
12253	chr1	100443571	100444480	+	0	NA	intron (NM_001319212, intron 7 of 13)	intron (NM_001319212, intron 7 of 13)	91519	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
5105	chr1	24856971	24857980	+	0	NA	Intergenic	Intergenic	61941	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
57945	chr12	123711571	123712930	+	0	NA	promoter-TSS (NM_012463)	promoter-TSS (NM_012463)	-103	NM_012463	23545		NM_012463	ENSG00000185344	ATP6V0A2	A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS|a2V	ATPase H+ transporting V0 subunit a2	protein-coding
204430	chr7	3117801	3118430	+	0	NA	Intergenic	Intergenic	40458	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
139881	chr2	230665351	230666000	+	0	NA	Intergenic	AluSx1|SINE|Alu	34854	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
161344	chr3	40312721	40312980	+	0	NA	TTS (NM_005875)	TTS (NM_005875)	3143	NM_005875	10289		NM_005875	ENSG00000114784	EIF1B	GC20	eukaryotic translation initiation factor 1B	protein-coding
105206	chr17	82323471	82324380	+	0	NA	intron (NM_003004, intron 3 of 4)	intron (NM_003004, intron 3 of 4)	-6317	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
50173	chr12	45987451	45987780	+	0	NA	intron (NM_004719, intron 1 of 14)	L2a|LINE|L2	2959	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
92389	chr17	8285721	8286180	+	0	NA	Intergenic	Intergenic	-2720	NM_001177802	29098		NM_016492	ENSG00000108961	RANGRF	HSPC165|HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
94095	chr17	27645401	27645880	+	0	NA	intron (NM_009587, intron 6 of 10)	intron (NM_009587, intron 6 of 10)	14452	NM_009587	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
169939	chr3	179028521	179028780	+	0	NA	intron (NR_164721, intron 3 of 5)	intron (NR_164721, intron 3 of 5)	40692	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
95816	chr17	38747201	38748580	+	0	NA	5' UTR (NM_007144, exon 2 of 11)	5' UTR (NM_007144, exon 2 of 11)	446	NM_001369614	7703		NM_007144	ENSG00000277258	PCGF2	MEL-18|RNF110|TPFS|ZNF144	polycomb group ring finger 2	protein-coding
62759	chr13	108176701	108176930	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	37967	NM_002312	3981		NM_002312	ENSG00000174405	LIG4	LIG4S	DNA ligase 4	protein-coding
42648	chr11	72432821	72433150	+	0	NA	intron (NM_001258394, intron 1 of 17)	intron (NM_001258394, intron 1 of 17)	1546	NM_030813	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
168229	chr3	141310371	141310530	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	-13736	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
120274	chr19	43207221	43207480	+	0	NA	Intergenic	Intergenic	-1576	NM_001276495	5672		NM_002780	ENSG00000243137	PSG4	PSBG-4|PSBG-9|PSG9	pregnancy specific beta-1-glycoprotein 4	protein-coding
64682	chr14	32217351	32217450	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-14131	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
178743	chr4	153127701	153128380	+	0	NA	Intergenic	Intergenic	-24123	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
177478	chr4	113831651	113831750	+	0	NA	Intergenic	Intergenic	-69773	NM_172114	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
184267	chr5	96720121	96720730	+	0	NA	intron (NM_173060, intron 1 of 28)	intron (NM_173060, intron 1 of 28)	17765	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
129471	chr2	69578471	69578630	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-58379	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
90960	chr17	2685501	2686030	+	0	NA	TTS (NM_000430)	TTS (NM_000430)	7154	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
27726	chr10	34666221	34666480	+	0	NA	intron (NM_019619, intron 2 of 24)	intron (NM_019619, intron 2 of 24)	148946	NM_001184794	56288		NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
23524	chr1	229127271	229127530	+	0	NA	Intergenic	Intergenic	47401	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
154037	chr22	30485371	30486130	+	0	NA	Intergenic	MIRb|SINE|MIR	-3994	NR_001580	376844		NR_001580		SDC4P	-	syndecan 4 pseudogene	pseudo
106133	chr18	9332251	9332550	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2373	NM_020648	57045		NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation BMP signaling modulator 1	protein-coding
121129	chr19	46022551	46023100	+	0	NA	exon (NM_005091, exon 1 of 3)	exon (NM_005091, exon 1 of 3)	228	NM_005091	8993		NM_005091	ENSG00000008438	PGLYRP1	PGLYRP|PGRP|PGRP-S|PGRPS|TAG7|TNFSF3L	peptidoglycan recognition protein 1	protein-coding
34869	chr11	354941	355700	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-14179	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
220077	chr8	93985671	93986480	+	0	NA	Intergenic	Intergenic	69128	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
33619	chr10	119602501	119602880	+	0	NA	Intergenic	LTR16B1|LTR|ERVL	-5661	NM_003252	7073		NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
115169	chr19	14425451	14426030	+	0	NA	Intergenic	Intergenic	-6357	NR_046366	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
43687	chr11	85825151	85825550	+	0	NA	Intergenic	AluYa5|SINE|Alu	-14191	NM_001289608	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
178644	chr4	152382151	152383130	+	0	NA	promoter-TSS (NM_001013415)	promoter-TSS (NM_001013415)	-111	NM_001013415	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
210405	chr7	100000821	100001480	+	0	NA	intron (NR_159960, intron 2 of 2)	intron (NR_159960, intron 2 of 2)	3460	NR_159959	105375423		NR_159959	ENSG00000286923	LOC105375423	-	uncharacterized LOC105375423	ncRNA
76954	chr15	78108071	78109100	+	0	NA	intron (NM_001301224, intron 3 of 4)	intron (NM_001301224, intron 3 of 4)	16000	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
49170	chr12	14995601	14996100	+	0	NA	Intergenic	Intergenic	-5983	NR_120466	101928340		NR_120466		LINC01489	-	long intergenic non-protein coding RNA 1489	ncRNA
146977	chr20	52975271	52975630	+	0	NA	intron (NM_173485, intron 1 of 2)	intron (NM_173485, intron 1 of 2)	3092	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
29643	chr10	71848551	71849150	+	0	NA	intron (NM_002778, intron 1 of 13)	intron (NM_002778, intron 1 of 13)	2401	NM_002778	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
90995	chr17	2750671	2750980	+	0	NA	Intergenic	Intergenic	-1173	NM_001355573	101928991		NM_001355573	ENSG00000277200	CCDC92B	-	coiled-coil domain containing 92B	protein-coding
182563	chr5	65929071	65929230	+	0	NA	intron (NM_001253697, intron 1 of 25)	intron (NM_001253697, intron 1 of 25)	2575	NM_001253697	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
200722	chr6	137641371	137642000	+	0	NA	Intergenic	Intergenic	-23961	NR_125867	102723649		NR_125867	ENSG00000230533	LINC03004	-	long intergenic non-protein coding RNA 3004	ncRNA
51223	chr12	50663251	50663350	+	0	NA	intron (NM_173602, intron 4 of 37)	AluY|SINE|Alu	-100801	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
1202	chr1	2251471	2252850	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	23841	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
117272	chr19	19464701	19465100	+	0	NA	intron (NM_001384522, intron 3 of 13)	intron (NM_001384522, intron 3 of 13)	29837	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
143919	chr20	32651451	32651900	+	0	NA	intron (NM_182584, intron 2 of 5)	intron (NM_182584, intron 2 of 5)	22266	NM_182584	284805		NM_182584	ENSG00000198547	C20orf203	-	chromosome 20 open reading frame 203	protein-coding
215586	chr7	158856101	158857650	+	0	NA	intron (NM_001350917, intron 1 of 25)	CpG	317	NM_001350917	55112		NM_018051	ENSG00000126870	DYNC2I1	CFAP163|DIC6|FAP163|SRPS6|SRTD8|WDR60	dynein 2 intermediate chain 1	protein-coding
25812	chr10	11194621	11195980	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	30270	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
188499	chr5	154829571	154830530	+	0	NA	TTS (NR_039667)	TTS (NR_039667)	592	NR_039667	100616306		NR_039667	ENSG00000263361	MIR378H	-	microRNA 378h	ncRNA
172826	chr4	3103051	3103350	+	0	NA	intron (NM_002111, intron 3 of 66)	(AT)n|Simple_repeat|Simple_repeat	28519	NM_002111	3064		NM_002111	ENSG00000197386	HTT	HD|IT15|LOMARS	huntingtin	protein-coding
121994	chr19	48514871	48515700	+	0	NA	Intergenic	AluSz|SINE|Alu	-2096	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
152763	chr22	21762701	21763800	+	0	NA	3' UTR (NM_002745, exon 9 of 9)	3' UTR (NM_002745, exon 9 of 9)	-27456	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
142493	chr20	4697651	4697950	+	0	NA	intron (NM_001080123, intron 1 of 1)	L2a|LINE|L2	11344	NM_183079	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
215807	chr8	2404251	2404660	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	218910	NR_125423	101927815		NR_125423	ENSG00000254319	LINC03021	-	long intergenic non-protein coding RNA 3021	ncRNA
46365	chr11	126208671	126208830	+	0	NA	intron (NM_032795, intron 3 of 6)	intron (NM_032795, intron 3 of 6)	2900	NM_032795	84881		NM_032795	ENSG00000165526	RPUSD4	-	RNA pseudouridine synthase D4	protein-coding
97214	chr17	42772821	42773880	+	0	NA	promoter-TSS (NM_032353)	promoter-TSS (NM_032353)	-99	NM_032353	84313		NM_032353	ENSG00000131475	VPS25	DERP9|EAP20|FAP20	vacuolar protein sorting 25 homolog	protein-coding
169751	chr3	172525271	172525430	+	0	NA	Intergenic	Intergenic	-1920	NM_003810	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
74631	chr15	60740651	60741400	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	59456	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
10502	chr1	66552451	66552550	+	0	NA	intron (NM_001376546, intron 1 of 23)	intron (NM_001376546, intron 1 of 23)	18347	NM_001376548	84251		NM_032291	ENSG00000118473	SGIP1	-	SH3GL interacting endocytic adaptor 1	protein-coding
158681	chr3	5186051	5186380	+	0	NA	Intergenic	Intergenic	-1492	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
191040	chr6	3221651	3222350	+	0	NA	Intergenic	(CAC)n|Simple_repeat|Simple_repeat	5653	NM_178012	347733		NM_178012	ENSG00000137285	TUBB2B	CDCBM7|PMGYSA|bA506K6.1	tubulin beta 2B class IIb	protein-coding
148569	chr20	64316471	64317200	+	0	NA	Intergenic	CpG	26450	NR_040415	107126285		NR_040415		SEPTIN14P20	C20orf69|LINC00266-1|NCRNA00266|NCRNA00266-1|RBRP|SEPT14P20|bA476I15.3	septin 14 pseudogene 20	pseudo
53589	chr12	67943301	67943580	+	0	NA	intron (NR_120456, intron 2 of 2)	intron (NR_120456, intron 2 of 2)	14205	NR_120456	101927922		NR_120456	ENSG00000255772	LINC01479	HRAT39	long intergenic non-protein coding RNA 1479	ncRNA
65912	chr14	55289651	55289750	+	0	NA	intron (NM_152231, intron 1 of 1)	AluJr|SINE|Alu	17546	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
141610	chr2	241665371	241666130	+	0	NA	intron (NM_013325, intron 7 of 12)	intron (NM_013325, intron 7 of 12)	21065	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
151611	chr22	11973821	11974480	+	0	NA	Intergenic	CpG	76744	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
111691	chr19	4272901	4273500	+	0	NA	Intergenic	Intergenic	-5869	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
212409	chr7	128155401	128155600	+	0	NA	Intergenic	Intergenic	-52372	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
119152	chr19	39386951	39387450	+	0	NA	non-coding (NR_046384, exon 11 of 14)	non-coding (NR_046384, exon 11 of 14)	3906	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
67469	chr14	70887601	70888030	+	0	NA	Intergenic	Intergenic	-19644	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
46390	chr11	126303471	126304830	+	0	NA	promoter-TSS (NM_001350236)	promoter-TSS (NM_001350236)	90	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
223926	chr9	517971	518130	+	0	NA	intron (NM_001354332, intron 1 of 11)	intron (NM_001354332, intron 1 of 11)	13355	NM_015158	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
150833	chr21	44024221	44024480	+	0	NA	intron (NM_003274, intron 1 of 22)	MER5A|DNA|hAT-Charlie	12041	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
148680	chr21	6152151	6152600	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	41244	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
45102	chr11	117092701	117093430	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	5363	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
136180	chr2	174492071	174492230	+	0	NA	Intergenic	Intergenic	-5062	NM_001267051	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
16766	chr1	155377921	155378180	+	0	NA	intron (NM_018489, intron 10 of 27)	AluY|SINE|Alu	-31605	NR_030282	693140		NR_030282	ENSG00000283701	MIR555	MIRN555|hsa-mir-555	microRNA 555	ncRNA
224873	chr9	31346951	31348150	+	0	NA	Intergenic	L1MC4a|LINE|L1	33940	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
236686	chrX	77731751	77732100	+	0	NA	intron (NM_138270, intron 1 of 33)	LTR28B|LTR|ERV1	54291	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
112138	chr19	5610401	5610600	+	0	NA	intron (NM_014649, intron 8 of 20)	intron (NM_014649, intron 8 of 20)	12276	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
81750	chr16	11390301	11390500	+	0	NA	exon (NM_001370704, exon 59 of 67)	exon (NM_001370704, exon 59 of 67)	44941	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
153302	chr22	24181951	24182050	+	0	NA	intron (NM_019601, intron 1 of 14)	intron (NM_019601, intron 1 of 14)	513	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
106716	chr18	23481351	23481450	+	0	NA	non-coding (NR_145477, exon 13 of 13)	non-coding (NR_145477, exon 13 of 13)	-22070	NM_001276342	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
233776	chrX	1427621	1428330	+	0	NA	exon (NM_004192, exon 7 of 13).2	exon (NM_004192, exon 7 of 13).2	24934	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
144211	chr20	34350001	34350630	+	0	NA	Intergenic	LTR31|LTR|ERV1	-12958	NM_001257138	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
235085	chrX	40202421	40203080	+	0	NA	Intergenic	MER21A|LTR|ERVL	-25421	NM_001123383	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
18515	chr1	161771801	161772100	+	0	NA	intron (NM_007348, intron 1 of 15)	L2|LINE|L2	5630	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
234483	chrX	18219271	18219430	+	0	NA	intron (NM_153346, intron 1 of 13)	intron (NM_153346, intron 1 of 13)	1536	NM_153346	139105		NM_153346	ENSG00000177324	BEND2	CXorf20	BEN domain containing 2	protein-coding
227175	chr9	87445701	87445900	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-51428	NM_001288731	1612		NM_004938	ENSG00000196730	DAPK1	DAPK|ROCO3	death associated protein kinase 1	protein-coding
180131	chr5	1321921	1322580	+	0	NA	intron (NM_030782, intron 13 of 16)	intron (NM_030782, intron 13 of 16)	-12873	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
152664	chr22	21578801	21579000	+	0	NA	intron (NR_046082, intron 1 of 3)	intron (NR_046082, intron 1 of 3)	11186	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
88953	chr16	87846101	87846300	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-7696	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
114290	chr19	11673771	11674150	+	0	NA	promoter-TSS (NR_028594)	promoter-TSS (NR_028594)	-38	NR_028594	401898		NM_001013691		ZNF833P	ZNF833	zinc finger protein 833, pseudogene	pseudo
154210	chr22	31495551	31498030	+	0	NA	intron (NM_001258326, intron 1 of 30)	CpG	254	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
6667	chr1	29128571	29129300	+	0	NA	Intergenic	MIRb|SINE|MIR	-5032	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
221144	chr8	119499301	119499500	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	82954	NM_002514	4856		NM_002514	ENSG00000136999	CCN3	IBP-9|IGFBP-9|IGFBP9|NOV|NOVh	cellular communication network factor 3	protein-coding
104414	chr17	81059921	81060350	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	2401	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
59091	chr13	21075621	21076600	+	0	NA	Intergenic	CpG	-14524	NM_014572	26524		NM_014572	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
168047	chr3	136927271	136927630	+	0	NA	intron (NM_001291999, intron 1 of 3)	L1M5|LINE|L1	-3052	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
139014	chr2	218386601	218386800	+	0	NA	exon (NM_000578, exon 5 of 15)	exon (NM_000578, exon 5 of 15)	4427	NM_000578	6556		NM_000578	ENSG00000018280	SLC11A1	LSH|NRAMP|NRAMP1	solute carrier family 11 member 1	protein-coding
166182	chr3	111689521	111689800	+	0	NA	intron (NM_153268, intron 1 of 3)	intron (NM_153268, intron 1 of 3)	-12227	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
170577	chr3	186824301	186824880	+	0	NA	non-coding (NR_125409, exon 2 of 4)	non-coding (NR_125409, exon 2 of 4)	931	NR_125409	102724699		NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
133724	chr2	127381421	127382250	+	0	NA	intron (NM_001371911, intron 1 of 16)	L1MC5a|LINE|L1	6140	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
65657	chr14	52400651	52401380	+	0	NA	Intergenic	Intergenic	86703	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
54908	chr12	96064171	96064530	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-20830	NM_001256643	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
200895	chr6	139030571	139031000	+	0	NA	intron (NM_021243, intron 1 of 2)	intron (NM_021243, intron 1 of 2)	2040	NM_021243	58527		NM_021243	ENSG00000146386	ABRACL	C6orf115|Costars|HSPC280|PRO2013	ABRA C-terminal like	protein-coding
108940	chr18	79487101	79487300	+	0	NA	intron (NM_172387, intron 9 of 9)	CpG	86901	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
81270	chr16	4639601	4639800	+	0	NA	intron (NM_001142291, intron 1 of 15)	intron (NM_001142291, intron 1 of 15)	14874	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
193118	chr6	28953251	28954330	+	0	NA	Intergenic	Intergenic	10006	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
34520	chr10	132654621	132655080	+	0	NA	intron (NM_005539, intron 4 of 15)	intron (NM_005539, intron 4 of 15)	-26425	NM_001321042	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
58889	chr13	19109151	19109400	+	0	NA	intron (NR_146902, intron 3 of 4)	L1PA2|LINE|L1	9008	NR_146902	107984132		NR_146902	ENSG00000287861	LOC107984132	-	uncharacterized LOC107984132	ncRNA
1239	chr1	2284621	2285280	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	56631	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
68924	chr14	91372521	91373200	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	44960	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
116781	chr19	18510801	18511000	+	0	NA	intron (NM_006532, intron 1 of 11)	AluSx1|SINE|Alu	11170	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
140219	chr2	231719421	231719680	+	0	NA	Intergenic	(ATT)n|Simple_repeat|Simple_repeat	6236	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
209083	chr7	74846771	74847300	+	0	NA	intron (NM_173537, intron 1 of 15)	AluJo|SINE|Alu	3090	NM_001368300	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
115237	chr19	14512801	14514200	+	0	NA	Intergenic	Intergenic	4362	NM_001300914	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
134395	chr2	136423201	136424880	+	0	NA	Intergenic	Intergenic	-305891	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
184139	chr5	94795171	94795530	+	0	NA	intron (NM_001297777, intron 15 of 19)	intron (NM_001297777, intron 15 of 19)	176681	NM_032290	84250		NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding
72742	chr15	39494551	39494850	+	0	NA	Intergenic	L2b|LINE|L2	-86379	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
96402	chr17	40144251	40144550	+	0	NA	intron (NM_007359, intron 3 of 13)	AluSx|SINE|Alu	3863	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
231796	chr9	132356001	132357580	+	0	NA	Intergenic	Intergenic	-1804	NM_015046	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
236263	chrX	65923251	65923550	+	0	NA	Intergenic	L1PA11|LINE|L1	-95470	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
179859	chr5	541401	541930	+	0	NA	Intergenic	Intergenic	-5783	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
97655	chr17	44205771	44205930	+	0	NA	non-coding (NR_045058, exon 21 of 21)	non-coding (NR_045058, exon 21 of 21)	1989	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
22000	chr1	209769311	209771180	+	0	NA	intron (NM_001287754, intron 1 of 6)	intron (NM_001287754, intron 1 of 6)	1680	NM_001287754	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
79447	chr16	714721	717100	+	0	NA	exon (NM_024042, exon 2 of 4)	exon (NM_024042, exon 2 of 4)	792	NM_024042	79006		NM_024042	ENSG00000103260	METRN	C16orf23|c380A1.2	meteorin, glial cell differentiation regulator	protein-coding
215034	chr7	152435201	152437530	+	0	NA	promoter-TSS (NM_170606)	promoter-TSS (NM_170606)	-362	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
133623	chr2	126665621	126665980	+	0	NA	intron (NM_016815, intron 1 of 2)	MIRb|SINE|MIR	9642	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
126212	chr2	26841071	26841230	+	0	NA	Intergenic	MIRb|SINE|MIR	-6982	NM_020134	56896		NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|CV2|RTSC4|Ulip6	dihydropyrimidinase like 5	protein-coding
50008	chr12	42330171	42331000	+	0	NA	intron (NM_001364826, intron 2 of 9)	LTR5B|LTR|ERVK	-1213	NM_001364834	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
69533	chr14	96423821	96424610	+	0	NA	intron (NM_001350891, intron 5 of 16)	CpG	32087	NM_001350888	122481		NM_152327	ENSG00000140057	AK7	AK 7|CFAP75|FAP75|SPGF27	adenylate kinase 7	protein-coding
41977	chr11	67370021	67370680	+	0	NA	intron (NM_001166212, intron 1 of 2)	intron (NM_001166212, intron 1 of 2)	3248	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
225354	chr9	34661121	34661580	+	0	NA	TTS (NM_006664)	TTS (NM_006664)	1307	NM_006664	10850		NM_006664	ENSG00000213927	CCL27	ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27	C-C motif chemokine ligand 27	protein-coding
113671	chr19	10390621	10392200	+	0	NA	3' UTR (NM_007065, exon 8 of 8)	3' UTR (NM_007065, exon 8 of 8)	-10838	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
215301	chr7	157301971	157303330	+	0	NA	Intergenic	Intergenic	-34354	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
51706	chr12	53192151	53193050	+	0	NA	3' UTR (NM_001004304, exon 7 of 7)	3' UTR (NM_001004304, exon 7 of 7)	-11675	NM_001244705	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
7562	chr1	35145921	35146250	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	47060	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
14665	chr1	145812201	145812600	+	0	NA	intron (NM_014455, intron 1 of 8)	AluSz|SINE|Alu	11695	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
13815	chr1	117614601	117614800	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	8652	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
157563	chr22	45890471	45890880	+	0	NA	Intergenic	CpG	86487	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
80120	chr16	2034471	2035100	+	0	NA	intron (NM_001252076, intron 1 of 5)	intron (NM_001252076, intron 1 of 5)	1491	NM_001252075	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
126983	chr2	36507551	36507650	+	0	NA	intron (NM_016441, intron 8 of 16)	intron (NM_016441, intron 8 of 16)	90568	NM_005102	9637		NM_005102	ENSG00000171055	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2	protein-coding
208190	chr7	64907901	64908100	+	0	NA	intron (NM_021148, intron 1 of 3)	intron (NM_021148, intron 1 of 3)	4727	NM_001385650	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
94325	chr17	28777901	28778600	+	0	NA	intron (NM_001288636, intron 3 of 5)	L1PA8|LINE|L1	34221	NM_001288634	55731		NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding
72308	chr15	31213951	31214250	+	0	NA	Intergenic	AluY|SINE|Alu	-1921	NR_135834	102725022		NR_135834		LINC02352	-	long intergenic non-protein coding RNA 2352	ncRNA
109219	chr19	480971	481130	+	0	NA	intron (NM_001385599, intron 2 of 4)	intron (NM_001385599, intron 2 of 4)	-6067	NM_182577	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
239217	chrY	12930401	12930800	+	0	NA	Intergenic	Intergenic	24895	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
108696	chr18	77056601	77057530	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-40010	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
18134	chr1	160743301	160743680	+	0	NA	intron (NM_001282590, intron 1 of 5)	intron (NM_001282590, intron 1 of 5)	4243	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
191454	chr6	10732771	10733600	+	0	NA	Intergenic	LTR12_|LTR|ERV1	10115	NM_016462	51522		NM_016462	ENSG00000111843	TMEM14C	C6orf53|HSPC194|MSTP073|NET26|bA421M1.6	transmembrane protein 14C	protein-coding
19268	chr1	172704951	172705050	+	0	NA	Intergenic	Intergenic	45897	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
27203	chr10	28575251	28575780	+	0	NA	intron (NM_100486, intron 3 of 12)	L1MB8|LINE|L1	42397	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
55920	chr12	109833251	109833550	+	0	NA	promoter-TSS (NR_039718)	promoter-TSS (NR_039718)	-2	NM_021625	59341		NM_021625	ENSG00000111199	TRPV4	BCYM3|CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC	transient receptor potential cation channel subfamily V member 4	protein-coding
123974	chr19	55419301	55419800	+	0	NA	Intergenic	MER52C|LTR|ERV1	-11762	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
14690	chr1	145871521	145872650	+	0	NA	exon (NM_001280799, exon 8 of 12)	exon (NM_001280799, exon 8 of 12)	-13004	NM_006099	10401		NM_006099	ENSG00000131788	PIAS3	ZMIZ5	protein inhibitor of activated STAT 3	protein-coding
230594	chr9	128572701	128573150	+	0	NA	intron (NM_001375310, intron 3 of 57)	intron (NM_001375310, intron 3 of 57)	20338	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
94473	chr17	29268471	29269000	+	0	NA	intron (NM_020772, intron 2 of 3)	AluSp|SINE|Alu	21876	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
26406	chr10	17028601	17028800	+	0	NA	intron (NM_001081, intron 27 of 66)	AluSx1|SINE|Alu	101111	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
146808	chr20	51022921	51023780	+	0	NA	promoter-TSS (NM_002237)	promoter-TSS (NM_002237)	-243	NM_002237	3755		NM_002237	ENSG00000026559	KCNG1	K13|KCNG|KV6.1|kH2	potassium voltage-gated channel modifier subfamily G member 1	protein-coding
35508	chr11	1542601	1542800	+	0	NA	Intergenic	Intergenic	29571	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
156945	chr22	42328351	42328800	+	0	NA	Intergenic	MIRb|SINE|MIR	40633	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
154804	chr22	36976201	36976400	+	0	NA	Intergenic	AluSz|SINE|Alu	11052	NR_038954	100506241		NR_038954	ENSG00000215403	LL22NC01-81G9.3	-	uncharacterized protein FLJ39582-like	ncRNA
206364	chr7	30524521	30524780	+	0	NA	Intergenic	Intergenic	-19809	NM_001199816	79017		NM_024051	ENSG00000006625	GGCT	C7orf24|CRF21|GCTG|GGC	gamma-glutamylcyclotransferase	protein-coding
205836	chr7	24877871	24878680	+	0	NA	intron (NM_015550, intron 2 of 22)	intron (NM_015550, intron 2 of 22)	14346	NM_145322	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
26355	chr10	15824521	15824780	+	0	NA	intron (NM_001318330, intron 7 of 13)	intron (NM_001318330, intron 7 of 13)	35857	NM_024948	80013		NM_024948	ENSG00000148481	MINDY3	C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042	MINDY lysine 48 deubiquitinase 3	protein-coding
41624	chr11	66440701	66441350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2177	NR_120589	65003		NM_016050	ENSG00000174547	MRPL11	CGI-113|L11MT|MRP-L11|uL11m	mitochondrial ribosomal protein L11	protein-coding
68368	chr14	77747071	77747230	+	0	NA	intron (NM_001318844, intron 3 of 12)	SVA_B|Retroposon|SVA	-13618	NR_161324	283579		NM_174943	ENSG00000197734	C14orf178	-	chromosome 14 open reading frame 178	ncRNA
165154	chr3	72134951	72135250	+	0	NA	Intergenic	Intergenic	-16157	NR_038221	201617		NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
205511	chr7	18273051	18273150	+	0	NA	intron (NM_001321868, intron 2 of 25)	AluJr|SINE|Alu	-16992	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
155090	chr22	37568271	37568750	+	0	NA	exon (NM_152243, exon 3 of 3)	exon (NM_152243, exon 3 of 3)	8030	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
115010	chr19	14069571	14069730	+	0	NA	Intergenic	(CTTT)n|Simple_repeat|Simple_repeat	-3136	NM_001291291	113230		NM_001291291	ENSG00000141854	MISP3	-	MISP family member 3	protein-coding
21587	chr1	206502171	206502500	+	0	NA	Intergenic	L2c|LINE|L2	-5196	NM_182664	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
93841	chr17	20993821	20994280	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	48961	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
215978	chr8	8845271	8845630	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	48180	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
101465	chr17	67465001	67465600	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-6189	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
123038	chr19	51169101	51169600	+	0	NA	intron (NR_047529, intron 4 of 6)	LTR13|LTR|ERVK	2022	NR_047529	284367		NR_002804	ENSG00000291114	SIGLEC17P	HSPC078|SIGLECP2|SIGLECP3	sialic acid binding Ig like lectin 17, pseudogene	pseudo
132436	chr2	105836851	105837750	+	0	NA	intron (NM_001004722, intron 2 of 3)	L1ME3F|LINE|L1	-14547	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
108668	chr18	76824471	76824630	+	0	NA	intron (NM_007345, intron 1 of 30)	intron (NM_007345, intron 1 of 30)	790	NM_007345	7776		NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
125702	chr2	20396151	20396250	+	0	NA	Intergenic	Intergenic	-43947	NM_001352920	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
32444	chr10	102611921	102612600	+	0	NA	intron (NM_001178133, intron 8 of 10)	intron (NM_001178133, intron 8 of 10)	-32219	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
145091	chr20	38692421	38692900	+	0	NA	Intergenic	Intergenic	-31826	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
186487	chr5	138177771	138179280	+	0	NA	promoter-TSS (NM_005733)	promoter-TSS (NM_005733)	105	NM_001300962	10902		NM_006696	ENSG00000112983	BRD8	SMAP|SMAP2|p120	bromodomain containing 8	protein-coding
233749	chrX	1387521	1387780	+	0	NA	intron (NM_001636, intron 2 of 3)	intron (NM_001636, intron 2 of 3)	4463	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
187763	chr5	144203751	144204430	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	-1301	NM_001370487	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
59321	chr13	24308651	24308750	+	0	NA	promoter-TSS (NM_001303137)	promoter-TSS (NM_001303137)	-880	NM_001303137	338872		NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and TNF related 9	protein-coding
93148	chr17	17749421	17750340	+	0	NA	intron (NM_030665, intron 2 of 5)	L2b|LINE|L2	16422	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
103747	chr17	78917751	78918250	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	7387	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
113358	chr19	8694071	8694780	+	0	NA	Intergenic	Intergenic	4370	NM_178525	284382		NM_178525	ENSG00000181786	ACTL9	HSD21|SPGF53	actin like 9	protein-coding
137842	chr2	200683471	200683630	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-12173	NR_135011	107161151		NR_135011		AOX3P-AOX2P	AOX3/AOX3L1	AOX3P-AOX2P readthrough, transcribed pseudogene	pseudo
175862	chr4	79913501	79913700	+	0	NA	intron (NM_001286781, intron 16 of 16)	L4_C_Mam|LINE|RTE-X	86129	NR_026555	118425		NM_058168	ENSG00000251321	PCAT4	GDEP|PCA4|PCAN1	prostate cancer associated transcript 4	ncRNA
28824	chr10	62367271	62367700	+	0	NA	intron (NR_104162, intron 1 of 3)	MSTB1|LTR|ERVL-MaLR	-6672	NM_199450	22891		NM_014951	ENSG00000138311	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
163403	chr3	50530201	50531030	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-26371	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
170320	chr3	184357451	184358280	+	0	NA	intron (NM_004366, intron 5 of 23)	intron (NM_004366, intron 5 of 23)	3740	NM_001171089	1181		NM_004366	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|FHA2|FHII|HALD2|LKPAT|clC-2	chloride voltage-gated channel 2	protein-coding
78686	chr15	95869821	95870280	+	0	NA	Intergenic	Intergenic	257791	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
132897	chr2	111376971	111377330	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	-56059	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
202899	chr6	160005271	160005430	+	0	NA	non-coding (NR_047514, exon 1 of 1)	non-coding (NR_047514, exon 1 of 1)	2314	NR_047511	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
226382	chr9	70352801	70353080	+	0	NA	3' UTR (NM_015110, exon 25 of 25)	3' UTR (NM_015110, exon 25 of 25)	61717	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
159108	chr3	12580151	12580650	+	0	NA	intron (NM_014160, intron 6 of 7)	intron (NM_014160, intron 6 of 7)	-19401	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
239030	chrY	3527171	3527330	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-51817	NM_139214	90655		NM_139214	ENSG00000176679	TGIF2LY	TGIFLY	TGFB induced factor homeobox 2 like Y-linked	protein-coding
92187	chr17	7826101	7826300	+	0	NA	intron (NM_020877, intron 77 of 85)	AluSx|SINE|Alu	-13706	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
42426	chr11	69112851	69112950	+	0	NA	Intergenic	AluSc8|SINE|Alu	29724	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
220226	chr8	96312501	96313380	+	0	NA	intron (NM_014754, intron 9 of 12)	intron (NM_014754, intron 9 of 12)	51038	NM_014754	9791		NM_014754	ENSG00000156471	PTDSS1	LMHD|PSS1|PSSA	phosphatidylserine synthase 1	protein-coding
142215	chr20	3053801	3054600	+	0	NA	Intergenic	AluSp|SINE|Alu	8148	NM_030811	64949		NM_030811	ENSG00000125901	MRPS26	C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3|mS26	mitochondrial ribosomal protein S26	protein-coding
46020	chr11	122580471	122581380	+	0	NA	Intergenic	Intergenic	-74797	NM_001363365	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
187664	chr5	143197021	143197280	+	0	NA	intron (NM_001349547, intron 20 of 21)	L1ME3B|LINE|L1	4650	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
190627	chr5	181202701	181202980	+	0	NA	TTS (NM_033342)	TTS (NM_033342)	1500	NM_203294	81786		NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
44299	chr11	102341421	102342230	+	0	NA	Intergenic	Intergenic	-5357	NM_001166	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
62279	chr13	98673071	98673380	+	0	NA	Intergenic	Intergenic	79447	NM_005073	6564		NM_005073	ENSG00000088386	SLC15A1	HPECT1|HPEPT1|PEPT1	solute carrier family 15 member 1	protein-coding
205497	chr7	17941231	17941500	+	0	NA	promoter-TSS (NM_001350870)	promoter-TSS (NM_001350870)	-857	NM_001350868	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
135499	chr2	161956401	161957000	+	0	NA	intron (NM_001178016, intron 19 of 26)	intron (NM_001178016, intron 19 of 26)	117515	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
231768	chr9	132240301	132241800	+	0	NA	intron (NM_032536, intron 7 of 7)	CpG	78992	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
31646	chr10	97398321	97398600	+	0	NA	intron (NM_015179, intron 2 of 33)	AluSz|SINE|Alu	2880	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
2728	chr1	10661001	10661480	+	0	NA	intron (NM_017766, intron 5 of 15)	intron (NM_017766, intron 5 of 15)	135406	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
101572	chr17	68047851	68048630	+	0	NA	Intergenic	Intergenic	12280	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
34671	chr10	133351171	133352580	+	0	NA	intron (NM_145202, intron 3 of 4)	intron (NM_145202, intron 3 of 4)	4502	NM_145202	118471		NM_145202	ENSG00000165828	PRAP1	PRO1195|UPA	proline rich acidic protein 1	protein-coding
216115	chr8	11283951	11285250	+	0	NA	promoter-TSS (NM_015458)	promoter-TSS (NM_015458)	-216	NM_015458	66036		NM_015458	ENSG00000104643	MTMR9	C8orf9|LIP-STYX|MTMR8	myotubularin related protein 9	protein-coding
209389	chr7	76315371	76316130	+	0	NA	Intergenic	MIR|SINE|MIR	13077	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
68677	chr14	90301601	90302030	+	0	NA	intron (NM_017970, intron 6 of 13)	intron (NM_017970, intron 6 of 13)	30126	NM_017970	55051		NM_017970	ENSG00000119720	NRDE2	C14orf102	NRDE-2, necessary for RNA interference, domain containing	protein-coding
139387	chr2	221727171	221727330	+	0	NA	Intergenic	Intergenic	-153048	NM_001304536	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
12773	chr1	109643101	109643730	+	0	NA	Intergenic	CpG	-12661	NR_024538	2948		NM_000850	ENSG00000168765	GSTM4	GSTM4-4|GTM4	glutathione S-transferase mu 4	protein-coding
168068	chr3	137971171	137971350	+	0	NA	Intergenic	Intergenic	-27556	NM_001002026	51208		NM_016369	ENSG00000066405	CLDN18	SFTA5|SFTPJ	claudin 18	protein-coding
144354	chr20	35005571	35005930	+	0	NA	exon (NM_015638, exon 16 of 19)	exon (NM_015638, exon 16 of 19)	-15278	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
89403	chr16	88822051	88822350	+	0	NA	intron (NM_000512, intron 12 of 13)	intron (NM_000512, intron 12 of 13)	-10272	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
123292	chr19	53553121	53553410	+	0	NA	intron (NM_001317113, intron 2 of 4)	AluSq|SINE|Alu	-1234	NM_001253801	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
181855	chr5	53170851	53170950	+	0	NA	Intergenic	Intergenic	61058	NR_104654	257396		NR_034107	ENSG00000247796	MOCS2-DT	-	MOCS2 divergent transcript	ncRNA
156671	chr22	41651801	41652000	+	0	NA	intron (NM_001288976, intron 8 of 12)	AluSx|SINE|Alu	30605	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
58414	chr12	131915921	131916450	+	0	NA	intron (NM_003565, intron 19 of 27)	intron (NM_003565, intron 19 of 27)	-13091	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
209555	chr7	77329671	77329830	+	0	NA	intron (NR_146937, intron 20 of 31)	L1MD2|LINE|L1	-85448	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
120618	chr19	45040571	45041380	+	0	NA	intron (NM_001278439, intron 2 of 19)	AluYe5|SINE|Alu	1930	NR_103529	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
7132	chr1	32198471	32199130	+	0	NA	TTS (NM_001376857)	TTS (NM_001376857)	-1795	NM_001301011	79140		NM_024296	ENSG00000160050	CCDC28B	-	coiled-coil domain containing 28B	protein-coding
1495	chr1	2762871	2763530	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	37668	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
234158	chrX	10620071	10620430	+	0	NA	intron (NM_033290, intron 1 of 9)	CpG	335	NM_000381	4281		NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
177822	chr4	123616981	123618350	+	0	NA	Intergenic	Intergenic	-32326	NR_027105	285419		NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
182914	chr5	70485971	70486130	+	0	NA	promoter-TSS (NR_073404)	promoter-TSS (NR_073404)	-451	NR_073404	441081		NR_073404		LOC441081	-	POM121 membrane glycoprotein (rat) pseudogene	pseudo
238676	chrX	154039751	154040050	+	0	NA	5' UTR (NM_001369393, exon 2 of 4)	5' UTR (NM_001369393, exon 2 of 4)	-19911	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
125506	chr2	12715171	12715330	+	0	NA	Intergenic	MIRc|SINE|MIR	-1622	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
18840	chr1	167708201	167708430	+	0	NA	3' UTR (NM_052862, exon 7 of 7)	3' UTR (NM_052862, exon 7 of 7)	-13667	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
10223	chr1	62746521	62746800	+	0	NA	Intergenic	Intergenic	-37446	NM_178221	84938		NM_032852	ENSG00000125703	ATG4C	APG4-C|APG4C|AUTL1|AUTL3|HsAPG4C	autophagy related 4C cysteine peptidase	protein-coding
146670	chr20	50507601	50508200	+	0	NA	Intergenic	AluJb|SINE|Alu	-2421	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
29684	chr10	72049671	72049830	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	38801	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
36750	chr11	9318101	9318300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3607	NM_001165030	440026		NM_015012	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
138170	chr2	202639051	202639780	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	4446	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
185723	chr5	132064501	132065850	+	0	NA	Intergenic	Intergenic	4520	NM_000588	3562		NM_000588	ENSG00000164399	IL3	IL-3|MCGF|MULTI-CSF	interleukin 3	protein-coding
100574	chr17	62965451	62967030	+	0	NA	promoter-TSS (NM_025185)	promoter-TSS (NM_025185)	5	NM_025185	26115		NM_015623	ENSG00000170921	TANC2	IDDALDS|ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
112276	chr19	5808171	5809400	+	0	NA	intron (NM_004558, intron 1 of 2)	AluY|SINE|Alu	3718	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
120485	chr19	44753021	44755280	+	0	NA	intron (NM_005178, intron 2 of 8)	intron (NM_005178, intron 2 of 8)	-4507	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
49527	chr12	25859851	25860350	+	0	NA	Intergenic	Intergenic	13979	NR_036188	100422897		NR_036188	ENSG00000283603	MIR4302	-	microRNA 4302	ncRNA
9796	chr1	53593721	53594180	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	134551	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
79826	chr16	1430521	1431750	+	0	NA	promoter-TSS (NM_001365310)	promoter-TSS (NM_001365310)	57	NM_001365310	105371045		NM_001365310	ENSG00000284395	PERCC1	DIAR11|ICR|gs104	proline and glutamate rich with coiled coil 1	protein-coding
60729	chr13	44278221	44278480	+	0	NA	Intergenic	Intergenic	-82150	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
74137	chr15	55246801	55247000	+	0	NA	intron (NM_183234, intron 1 of 6)	MIRb|SINE|MIR	23386	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
167430	chr3	129035821	129036680	+	0	NA	intron (NM_024768, intron 5 of 7)	intron (NM_024768, intron 5 of 7)	-24529	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
170599	chr3	186937101	186937300	+	0	NA	intron (NM_173216, intron 1 of 7)	intron (NM_173216, intron 1 of 7)	6674	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
65410	chr14	50822701	50823080	+	0	NA	intron (NM_020921, intron 2 of 30)	intron (NM_020921, intron 2 of 30)	1093	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
199737	chr6	125777271	125778030	+	0	NA	Intergenic	Intergenic	-3465	NM_001199619	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
66585	chr14	63507901	63509100	+	0	NA	promoter-TSS (NM_001282182)	promoter-TSS (NM_001282182)	-262	NM_001282182	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
91787	chr17	7014081	7016630	+	0	NA	TTS (NR_037715)	TTS (NR_037715)	573	NM_001142798	124944		NM_174893	ENSG00000258315	C17orf49	BAP18|HEPIS	chromosome 17 open reading frame 49	protein-coding
83383	chr16	26596321	26596580	+	0	NA	Intergenic	L1MD3|LINE|L1	-470477	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
61357	chr13	50991751	50992550	+	0	NA	Intergenic	Intergenic	74007	NR_003923	2974		NM_004129	ENSG00000293412	GUCY1B2	GC-SB2	guanylate cyclase 1 soluble subunit beta 2 (pseudogene)	pseudo
130340	chr2	84998901	84999100	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	27839	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
181961	chr5	55074151	55074600	+	0	NA	Intergenic	MIRb|SINE|MIR	-28271	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
143780	chr20	32442951	32443980	+	0	NA	3' UTR (NM_001256798, exon 11 of 11)	3' UTR (NM_001256798, exon 11 of 11)	40025	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
130875	chr2	87411201	87411400	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-44127	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
196198	chr6	42742621	42743280	+	0	NA	Intergenic	Intergenic	3153	NM_003192	6903		NM_003192	ENSG00000124659	TBCC	CFC	tubulin folding cofactor C	protein-coding
46875	chr11	133955071	133956200	+	0	NA	intron (NM_001277285, intron 1 of 19)	CpG	1333	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
45968	chr11	121455071	121455650	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	3046	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
204375	chr7	2977651	2977750	+	0	NA	intron (NM_032415, intron 1 of 24)	intron (NM_032415, intron 1 of 24)	66167	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
1005	chr1	1851551	1851850	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	39387	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
153781	chr22	29585351	29585650	+	0	NA	Intergenic	Intergenic	-4387	NM_003634	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
179912	chr5	691101	691600	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	2002	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
204840	chr7	5773571	5774130	+	0	NA	intron (NM_001377156, intron 1 of 17)	AluSx|SINE|Alu	7813	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
11173	chr1	87292821	87293130	+	0	NA	Intergenic	Intergenic	-35905	NM_006769	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
185624	chr5	131513721	131514080	+	0	NA	intron (NM_016340, intron 7 of 27)	AluJb|SINE|Alu	121329	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
149574	chr21	33238221	33240000	+	0	NA	intron (NM_001385055, intron 1 of 9)	L1ME4b|LINE|L1	9172	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
101776	chr17	73164621	73165400	+	0	NA	promoter-TSS (NM_001050)	promoter-TSS (NM_001050)	0	NM_001050	6752		NM_001050	ENSG00000180616	SSTR2	SST2	somatostatin receptor 2	protein-coding
179283	chr4	177229101	177229530	+	0	NA	Intergenic	Intergenic	-80559	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
70645	chr14	102925021	102926580	+	0	NA	intron (NM_030943, intron 3 of 11)	intron (NM_030943, intron 3 of 11)	3137	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
38182	chr11	36361821	36362450	+	0	NA	intron (NM_001160167, intron 1 of 8)	intron (NM_001160167, intron 1 of 8)	-13850	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
172595	chr4	2483651	2483750	+	0	NA	intron (NM_001185009, intron 2 of 8)	AluSz6|SINE|Alu	14247	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
173744	chr4	16206651	16207080	+	0	NA	intron (NM_153365, intron 2 of 13)	intron (NM_153365, intron 2 of 13)	19606	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
37066	chr11	12366001	12366600	+	0	NA	Intergenic	L1PA6|LINE|L1	-11271	NM_018222	55742		NM_018222	ENSG00000197702	PARVA	CH-ILKBP|MXRA2	parvin alpha	protein-coding
183581	chr5	80177051	80177350	+	0	NA	intron (NM_001174072, intron 4 of 11)	intron (NM_001174072, intron 4 of 11)	78848	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
76230	chr15	73941821	73942550	+	0	NA	intron (NM_005576, intron 1 of 6)	intron (NM_005576, intron 1 of 6)	-13937	NR_040068	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
8948	chr1	44237901	44238550	+	0	NA	intron (NR_110056, intron 2 of 3)	intron (NR_110056, intron 2 of 3)	6058	NR_046817	100874278		NR_046817	ENSG00000233602	ERI3-IT1	-	ERI3 intronic transcript 1	ncRNA
57031	chr12	120690321	120690580	+	0	NA	intron (NM_001303627, intron 1 of 4)	intron (NM_001303627, intron 1 of 4)	2140	NM_001303627	9761		NM_014730	ENSG00000110917	MLEC	KIAA0152	malectin	protein-coding
196166	chr6	42562321	42562580	+	0	NA	Intergenic	Intergenic	-1572	NM_015255	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
90462	chr17	1381571	1382330	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	18272	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
132879	chr2	111168151	111169130	+	0	NA	TTS (NM_006538)	TTS (NM_006538)	47726	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
202877	chr6	159970871	159971030	+	0	NA	intron (NM_000876, intron 1 of 47)	AluJb|SINE|Alu	1868	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
71142	chr14	104984401	104984680	+	0	NA	Intergenic	Intergenic	-1248	NM_174891	122616		NM_174891	ENSG00000140104	CLBA1	C14orf79	clathrin binding box of aftiphilin containing 1	protein-coding
72546	chr15	34342071	34343380	+	0	NA	promoter-TSS (NM_001284292)	promoter-TSS (NM_001284292)	411	NM_018648	55505		NM_018648	ENSG00000182117	NOP10	CHINE2|DKCB1|NOLA3|NOP10P|PFBMFT9	NOP10 ribonucleoprotein	protein-coding
42847	chr11	73154171	73154830	+	0	NA	Intergenic	Intergenic	-12182	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
82411	chr16	16231471	16231630	+	0	NA	promoter-TSS (NM_001004067).4	promoter-TSS (NM_001004067).4	-978	NM_001004067	408050		NM_001004067	ENSG00000103226	NOMO3	Nomo	NODAL modulator 3	protein-coding
213195	chr7	132518151	132518450	+	0	NA	intron (NM_181775, intron 2 of 4)	MamSINE1|SINE|tRNA-RTE	58170	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
34379	chr10	132309801	132310000	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	-1950	NM_173575	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
190452	chr5	179914251	179914550	+	0	NA	Intergenic	Intergenic	-6503	NM_015043	23061		NM_015043	ENSG00000197226	TBC1D9B	GRAMD9B	TBC1 domain family member 9B	protein-coding
35346	chr11	1188151	1188250	+	0	NA	exon (NM_001304359, exon 31 of 49).2	exon (NM_001304359, exon 31 of 49).2	30247	NM_001304359	4586		NM_017511	ENSG00000215182	MUC5AC	MUC5|TBM|leB|mucin	mucin 5AC, oligomeric mucus/gel-forming	protein-coding
231592	chr9	131541501	131541700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3923	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
184248	chr5	96673221	96673480	+	0	NA	intron (NM_001375317, intron 1 of 30)	MER57D|LTR|ERV1	10325	NM_001330629	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
205479	chr7	17402301	17402900	+	0	NA	intron (NR_110015, intron 1 of 2)	intron (NR_110015, intron 1 of 2)	27683	NR_110014	102659288		NR_110014		LINC02888	KCCAT333	long intergenic non-protein coding RNA 2888	ncRNA
135477	chr2	161416471	161417430	+	0	NA	exon (NM_006593, exon 1 of 6)	exon (NM_006593, exon 1 of 6)	653	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
155523	chr22	38694901	38695480	+	0	NA	intron (NM_014876, intron 2 of 4)	intron (NM_014876, intron 2 of 4)	5753	NM_001360236	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
113945	chr19	10754121	10754450	+	0	NA	intron (NM_001005362, intron 1 of 19)	AluSc8|SINE|Alu	-25969	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
43888	chr11	88356721	88357480	+	0	NA	Intergenic	MIRc|SINE|MIR	-19364	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
52106	chr12	54174701	54174900	+	0	NA	Intergenic	Intergenic	14157	NM_001351257	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
8330	chr1	40169151	40169600	+	0	NA	intron (NM_012421, intron 1 of 7)	AluYb8|SINE|Alu	7988	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
168096	chr3	138332321	138332980	+	0	NA	Intergenic	Intergenic	-2799	NM_001349024	347736		NM_178130	ENSG00000181322	NME9	NM23-H9|NXL2|TXL-2|TXL2|TXNDC6	NME/NM23 family member 9	protein-coding
51502	chr12	52123621	52124080	+	0	NA	Intergenic	Intergenic	30281	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
45324	chr11	118200621	118201480	+	0	NA	intron (NR_104479, intron 5 of 8)	intron (NR_104479, intron 5 of 8)	11896	NM_001286571	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
125887	chr2	24672501	24672750	+	0	NA	intron (NM_147233, intron 4 of 20)	AluJr4|SINE|Alu	88148	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
173643	chr4	13534101	13534300	+	0	NA	Intergenic	L2b|LINE|L2	-2783	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
141917	chr20	1118001	1119500	+	0	NA	promoter-TSS (NR_136535)	promoter-TSS (NR_136535)	148	NM_001323410	9491		NM_006814	ENSG00000125818	PSMF1	PI31	proteasome inhibitor subunit 1	protein-coding
20466	chr1	198609501	198610080	+	0	NA	Intergenic	Intergenic	-29178	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
197401	chr6	73510621	73511000	+	0	NA	Intergenic	AluSz|SINE|Alu	7628	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
123127	chr19	51925671	51926030	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-1622	NM_001031721	79898		NM_024840	ENSG00000176024	ZNF613	-	zinc finger protein 613	protein-coding
150443	chr21	42459121	42459380	+	0	NA	Intergenic	PABL_A|LTR|ERV1	36974	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
43181	chr11	75398851	75401480	+	0	NA	promoter-TSS (NR_000005)	promoter-TSS (NR_000005)	-226	NR_000005	6079		NR_000005	ENSG00000206941	SNORD15A	RNU15A|SNORNA|U15A	small nucleolar RNA, C/D box 15A	snoRNA
215850	chr8	7220951	7221430	+	0	NA	intron (NR_168401, intron 2 of 2)	intron (NR_168401, intron 2 of 2)	6998	NR_168401	101928095		NR_168401		LOC101928095	-	uncharacterized LOC101928095	ncRNA
63578	chr14	20460701	20462700	+	0	NA	promoter-TSS (NM_001100814)	promoter-TSS (NM_001100814)	-88	NM_001100814	90809		NM_144568	ENSG00000165782	PIP4P1	C14orf9|TMEM55B	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1	protein-coding
193220	chr6	29834751	29835300	+	0	NA	Intergenic	Intergenic	7200	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
59629	chr13	28059371	28059530	+	0	NA	intron (NM_004119, intron 3 of 23)	intron (NM_004119, intron 3 of 23)	41126	NM_004119	2322		NM_004119	ENSG00000122025	FLT3	CD135|FLK-2|FLK2|STK1	fms related receptor tyrosine kinase 3	protein-coding
122489	chr19	49564171	49564800	+	0	NA	intron (NM_001270960, intron 1 of 8)	L1ME3A|LINE|L1	16071	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
84745	chr16	30954801	30955000	+	0	NA	TTS (NM_152288)	TTS (NM_152288)	-2854	NM_014712	9739		NM_014712	ENSG00000099381	SETD1A	EPEDD|EPEO2|KMT2F|NEDSID|Set1|Set1A	SET domain containing 1A, histone lysine methyltransferase	protein-coding
56068	chr12	110580971	110581530	+	0	NA	intron (NM_139283, intron 1 of 5)	AluSg|SINE|Alu	2068	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
21249	chr1	204369021	204369400	+	0	NA	non-coding (NR_027022, exon 1 of 1)	non-coding (NR_027022, exon 1 of 1)	509	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
86428	chr16	66879751	66881450	+	0	NA	promoter-TSS (NM_001329928)	promoter-TSS (NM_001329928)	85	NM_020786	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
25241	chr10	6037821	6038730	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	24092	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
156358	chr22	40953471	40953630	+	0	NA	intron (NM_014248, intron 1 of 4)	intron (NM_014248, intron 1 of 4)	2172	NM_014248	9978		NM_014248	ENSG00000100387	RBX1	BA554C12.1|RNF75|ROC1	ring-box 1	protein-coding
148987	chr21	14089621	14089750	+	0	NA	Intergenic	L1M2|LINE|L1	-109241	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
224091	chr9	4386801	4387000	+	0	NA	Intergenic	MER51-int|LTR|ERV1	-86832	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
80577	chr16	2866351	2866930	+	0	NA	Intergenic	MER110A|LTR|ERV1	-8470	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
125381	chr2	11160651	11161730	+	0	NA	intron (NM_001282712, intron 3 of 3)	intron (NM_001282712, intron 3 of 3)	5723	NM_152391	130814		NM_152391	ENSG00000162976	SLC66A3	C2orf22|PQLC3	solute carrier family 66 member 3	protein-coding
154128	chr22	31162421	31162930	+	0	NA	intron (NR_024212, intron 1 of 5)	MER58B|DNA|hAT-Charlie	2493	NM_152267	91445		NM_152267	ENSG00000138942	RNF185	-	ring finger protein 185	protein-coding
216903	chr8	22690521	22691080	+	0	NA	exon (NM_001199881, exon 2 of 2)	exon (NM_001199881, exon 2 of 2)	1564	NM_001199880	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
165715	chr3	102235721	102236080	+	0	NA	Intergenic	Intergenic	72195	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
231747	chr9	132142371	132142560	+	0	NA	Intergenic	Intergenic	-19593	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
101749	chr17	72030121	72030600	+	0	NA	promoter-TSS (NR_110124)	promoter-TSS (NR_110124)	-294	NR_110132	102606463		NR_110124	ENSG00000256124	LINC01152	CMPD|TCONS_00025128	long intergenic non-protein coding RNA 1152	ncRNA
56994	chr12	120568871	120569530	+	0	NA	intron (NM_001330474, intron 13 of 16)	AluSp|SINE|Alu	12198	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
157914	chr22	49774671	49774900	+	0	NA	intron (NR_146335, intron 13 of 13)	intron (NR_146335, intron 13 of 13)	49546	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
11008	chr1	84689621	84691250	+	0	NA	promoter-TSS (NM_014021)	promoter-TSS (NM_014021)	26	NM_001166294	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
117994	chr19	33785301	33785900	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-11270	NM_001129995	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
160193	chr3	23807211	23807780	+	0	NA	promoter-TSS (NR_046652)	promoter-TSS (NR_046652)	-590	NR_046652	100874092		NR_046652	ENSG00000223791	UBE2E1-AS1	-	UBE2E1 antisense RNA 1	ncRNA
10706	chr1	75615621	75616330	+	0	NA	5' UTR (NM_001320283, exon 1 of 22)	5' UTR (NM_001320283, exon 1 of 22)	188	NM_001320283	204962		NM_152697	ENSG00000137968	SLC44A5	CTL5	solute carrier family 44 member 5	protein-coding
93212	chr17	17827821	17828300	+	0	NA	intron (NM_001005291, intron 1 of 19)	intron (NM_001005291, intron 1 of 19)	-4430	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
220099	chr8	94435371	94435730	+	0	NA	intron (NM_001205262, intron 3 of 3)	intron (NM_001205262, intron 3 of 3)	1394	NM_001205263	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
233465	chr9	137705351	137705950	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	82756	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
86646	chr16	67453071	67453430	+	0	NA	intron (NM_004691, intron 2 of 7)	intron (NM_004691, intron 2 of 7)	22129	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
33311	chr10	114830101	114830500	+	0	NA	intron (NM_001135051, intron 1 of 16)	AluSz|SINE|Alu	8520	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
40305	chr11	63880121	63880780	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	-8087	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
146999	chr20	53562971	53563330	+	0	NA	intron (NR_110051, intron 3 of 5)	AluY|SINE|Alu	10380	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
216653	chr8	22127021	22127480	+	0	NA	exon (NM_005144, exon 3 of 19)	exon (NM_005144, exon 3 of 19)	3760	NM_005144	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
16562	chr1	154972251	154972550	+	0	NA	intron (NM_001130041, intron 1 of 12)	intron (NM_001130041, intron 1 of 12)	-1653	NM_183001	6464		NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding
8712	chr1	42336851	42337150	+	0	NA	Intergenic	L2a|LINE|L2	-1120	NM_001198850	22887		NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
127691	chr2	43209371	43209680	+	0	NA	Intergenic	MIRb|SINE|MIR	17081	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
220142	chr8	94894721	94897080	+	0	NA	promoter-TSS (NM_057749)	promoter-TSS (NM_057749)	101	NR_148904	137682		NM_152416	ENSG00000156170	NDUFAF6	C8orf38|FRTS5|MC1DN17	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein-coding
179698	chr4	190118771	190118930	+	0	NA	Intergenic	MER92-int|LTR|ERV1	53621	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
188477	chr5	154762321	154762780	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	5396	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
67593	chr14	72420871	72421030	+	0	NA	intron (NM_001370288, intron 3 of 16)	intron (NM_001370288, intron 3 of 16)	-95870	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
143852	chr20	32530671	32530830	+	0	NA	intron (NM_001256798, intron 1 of 10)	AluSp|SINE|Alu	20791	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
106512	chr18	21053771	21053930	+	0	NA	intron (NM_005406, intron 2 of 32)	Cheshire|DNA|hAT-Charlie	57963	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
120992	chr19	45765221	45765550	+	0	NA	TTS (NM_001310124)	TTS (NM_001310124)	-2411	NR_147193	109729182		NR_147193	ENSG00000267395	DM1-AS	-	DM1 locus antisense RNA	ncRNA
214456	chr7	150323001	150324500	+	0	NA	promoter-TSS (NM_001164458)	promoter-TSS (NM_001164458)	-81	NM_001164458	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
34177	chr10	128122051	128122350	+	0	NA	intron (NM_001145966, intron 4 of 13)	MLT1B|LTR|ERVL-MaLR	4223	NM_002417	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
211175	chr7	102588371	102588530	+	0	NA	intron (NM_001079877, intron 16 of 19)	intron (NM_001079877, intron 16 of 19)	-15829	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
103768	chr17	78986821	78987600	+	0	NA	Intergenic	L1ME1|LINE|L1	-7287	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
68171	chr14	75980851	75980950	+	0	NA	5' UTR (NM_001329938, exon 1 of 5)	5' UTR (NM_001329938, exon 1 of 5)	1095	NM_003239	7043		NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
112249	chr19	5780751	5781450	+	0	NA	Intergenic	Intergenic	3646	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
228372	chr9	99106901	99107580	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	2127	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233572	chrX	296701	297080	+	0	NA	intron (NR_163416, intron 6 of 7)	MLT1D|LTR|ERVL-MaLR	13412	NM_001370373	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
48588	chr12	10310571	10310900	+	0	NA	intron (NR_147040, intron 3 of 4)	AluSz6|SINE|Alu	2865	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
202371	chr6	157813351	157813650	+	0	NA	Intergenic	HERV35I-int|LTR|ERV1	-9746	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
82150	chr16	14830301	14830700	+	0	NA	Intergenic	Intergenic	-3214	NM_001004067	408050		NM_001004067	ENSG00000103226	NOMO3	Nomo	NODAL modulator 3	protein-coding
7109	chr1	32132171	32132330	+	0	NA	intron (NM_012316, intron 1 of 13)	AluSx|SINE|Alu	24194	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
9961	chr1	54798351	54798450	+	0	NA	intron (NM_017904, intron 1 of 5)	MER94B|DNA|hAT-Blackjack	2923	NM_017904	55001		NM_017904	ENSG00000006555	TTC22	-	tetratricopeptide repeat domain 22	protein-coding
108647	chr18	76528721	76529180	+	0	NA	non-coding (NR_015417, exon 1 of 3)	non-coding (NR_015417, exon 1 of 3)	295	NR_015417	284276		NR_015417	ENSG00000266256	LINC00908	ASRPS	long intergenic non-protein coding RNA 908	ncRNA
23216	chr1	227707901	227708130	+	0	NA	Intergenic	Intergenic	-10308	NR_036753	401983		NR_036753		ZNF847P	gm127	zinc finger protein 847, pseudogene	pseudo
177795	chr4	123392301	123393200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4045	NM_001258038	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
159824	chr3	16400121	16400380	+	0	NA	intron (NM_015150, intron 4 of 9)	L2|LINE|L2	113449	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
238649	chrX	153984321	153985000	+	0	NA	Intergenic	Intergenic	-3484	NR_036175	100422877		NR_036175	ENSG00000283694	MIR3202-2	mir-3202-2	microRNA 3202-2	ncRNA
217144	chr8	25660321	25660580	+	0	NA	Intergenic	L1PA3|LINE|L1	201217	NM_152562	157313		NM_152562	ENSG00000184661	CDCA2	PPP1R81|Repo-Man	cell division cycle associated 2	protein-coding
3240	chr1	13793921	13794180	+	0	NA	intron (NM_012231, intron 8 of 9)	intron (NM_012231, intron 8 of 9)	44635	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
68878	chr14	91323321	91324600	+	0	NA	intron (NM_001080414, intron 12 of 29)	intron (NM_001080414, intron 12 of 29)	-70080	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
25958	chr10	11609601	11610000	+	0	NA	intron (NM_014688, intron 1 of 14)	intron (NM_014688, intron 1 of 14)	-1501	NR_160647	107984208		NR_160647	ENSG00000271360	USP6NL-AS1	-	USP6NL antisense RNA 1	ncRNA
92681	chr17	13003101	13003580	+	0	NA	intron (NM_173717, intron 12 of 23)	intron (NM_173717, intron 12 of 23)	14687	NM_018127	60528		NM_018127	ENSG00000006744	ELAC2	COXPD17|ELC2|HPC2	elaC ribonuclease Z 2	protein-coding
129519	chr2	69675571	69675730	+	0	NA	intron (NM_001320698, intron 2 of 14)	L1MB2|LINE|L1	31842	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
226701	chr9	75111051	75111730	+	0	NA	intron (NM_012383, intron 1 of 9)	intron (NM_012383, intron 1 of 9)	22876	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
168404	chr3	142225051	142225950	+	0	NA	promoter-TSS (NR_033289)	promoter-TSS (NR_033289)	85	NR_033289	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
48312	chr12	9001301	9001750	+	0	NA	intron (NM_005810, intron 3 of 4)	LTR42|LTR|ERVL	11900	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
216754	chr8	22468721	22469000	+	0	NA	intron (NM_005605, intron 1 of 13)	MLT1G3|LTR|ERVL-MaLR	27782	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
16291	chr1	154165971	154166130	+	0	NA	3' UTR (NM_152263, exon 10 of 10)	3' UTR (NM_152263, exon 10 of 10)	-10934	NM_001159484	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
162818	chr3	49157371	49157530	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-3049	NR_004405	22973		NR_004405		LAMB2P1	LAMB2L	laminin subunit beta 2 pseudogene 1	pseudo
45094	chr11	117085871	117086030	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSx|SINE|Alu	12478	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
20280	chr1	196373001	196373200	+	0	NA	intron (NR_146057, intron 13 of 26)	intron (NR_146057, intron 13 of 26)	209381	NR_039888	100616363		NR_039888	ENSG00000265986	MIR4735	-	microRNA 4735	ncRNA
103796	chr17	79064901	79065380	+	0	NA	Intergenic	L1M5|LINE|L1	-9684	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
28978	chr10	63254421	63255300	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluJb|SINE|Alu	14363	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
116302	chr19	17777871	17778780	+	0	NA	intron (NR_169221, intron 19 of 27)	intron (NR_169221, intron 19 of 27)	-16813	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
202908	chr6	160051451	160051750	+	0	NA	intron (NM_000876, intron 19 of 47)	intron (NM_000876, intron 19 of 47)	-41482	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
65858	chr14	55055171	55055330	+	0	NA	intron (NM_144578, intron 1 of 3)	FLAM_A|SINE|Alu	3603	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
110245	chr19	1782021	1782480	+	0	NA	non-coding (NR_047593, exon 29 of 29)	non-coding (NR_047593, exon 29 of 29)	28744	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
112027	chr19	5076521	5076780	+	0	NA	intron (NM_001370093, intron 7 of 11)	CpG	107537	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
79051	chr16	98351	98650	+	0	NA	intron (NM_001243249, intron 6 of 11)	intron (NM_001243249, intron 6 of 11)	20275	NM_001015052	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
87342	chr16	70342301	70342500	+	0	NA	intron (NR_039997, intron 1 of 4)	intron (NR_039997, intron 1 of 4)	4347	NR_039997	100506083		NR_039997	ENSG00000261777	DDX19A-DT	-	DDX19A divergent transcript	ncRNA
52288	chr12	54585621	54585880	+	0	NA	intron (NM_006741, intron 1 of 6)	intron (NM_006741, intron 1 of 6)	2909	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
168172	chr3	140363801	140364000	+	0	NA	intron (NM_022131, intron 2 of 16)	intron (NM_022131, intron 2 of 16)	144889	NR_108084	101927808		NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
97526	chr17	44003421	44003700	+	0	NA	intron (NM_004160, intron 1 of 6)	AluSg|SINE|Alu	885	NM_004160	5697		NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
93724	chr17	19533501	19534100	+	0	NA	promoter-TSS (NM_018242)	promoter-TSS (NM_018242)	-54	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
225211	chr9	34138421	34139050	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-12037	NM_015397	25853		NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
190920	chr6	2853681	2855100	+	0	NA	promoter-TSS (NR_039788)	promoter-TSS (NR_039788)	-283	NR_039788	100616285		NR_039788	ENSG00000266750	MIR4645	mir-4645	microRNA 4645	ncRNA
13540	chr1	115084701	115085630	+	0	NA	intron (NM_001308315, intron 1 of 6)	intron (NM_001308315, intron 1 of 6)	4335	NM_001308315	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
65151	chr14	45248921	45249230	+	0	NA	intron (NM_018353, intron 1 of 16)	AluSx|SINE|Alu	4127	NM_018353	55320		NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
202658	chr6	158777771	158778650	+	0	NA	intron (NM_003379, intron 6 of 12)	intron (NM_003379, intron 6 of 12)	-13457	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
61159	chr13	48976301	48977750	+	0	NA	intron (NM_001278438, intron 1 of 25)	intron (NM_001278438, intron 1 of 25)	363	NR_103528	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
138723	chr2	213150051	213150350	+	0	NA	5' UTR (NM_001079526, exon 2 of 9)	5' UTR (NM_001079526, exon 2 of 9)	237	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
185170	chr5	119348501	119348900	+	0	NA	intron (NM_001286814, intron 1 of 1)	AluSq|SINE|Alu	-6073	NM_001286813	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
55422	chr12	104494221	104495680	+	0	NA	intron (NM_018413, intron 1 of 2)	L1MB2|LINE|L1	38002	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
201724	chr6	149786171	149786530	+	0	NA	intron (NM_001252050, intron 3 of 6)	SVA_D|Retroposon|SVA	36609	NM_001360456	5110		NM_005389	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
174591	chr4	40252221	40252550	+	0	NA	Intergenic	AluSc8|SINE|Alu	-54800	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
183306	chr5	76608821	76609100	+	0	NA	promoter-TSS (NR_134278)	promoter-TSS (NR_134278)	9	NR_134278	101929109		NR_134278	ENSG00000249713	LOC101929109	-	uncharacterized LOC101929109	ncRNA
85062	chr16	32071601	32071850	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	116388	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
118771	chr19	38383101	38383630	+	0	NA	TTS (NM_152657)	TTS (NM_152657)	4669	NM_152657	199720		NM_152657	ENSG00000179168	GGN	-	gametogenetin	protein-coding
52939	chr12	57434701	57434900	+	0	NA	promoter-TSS (NM_005538)	promoter-TSS (NM_005538)	16	NM_005538	3626		NM_005538	ENSG00000175189	INHBC	IHBC	inhibin subunit beta C	protein-coding
128973	chr2	64659001	64659400	+	0	NA	Intergenic	MIRc|SINE|MIR	-5287	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
87708	chr16	74986151	74986450	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-1154	NM_001324172	79726		NM_030581	ENSG00000103091	WDR59	CDW12|FP977|p90-120	WD repeat domain 59	protein-coding
117129	chr19	19270271	19270630	+	0	NA	intron (NM_001001524, intron 2 of 9)	intron (NM_001001524, intron 2 of 9)	2851	NM_001001524	53345		NM_203510	ENSG00000213996	TM6SF2	-	transmembrane 6 superfamily member 2	protein-coding
28741	chr10	61967251	61967800	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	65826	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
209632	chr7	77733971	77734130	+	0	NA	intron (NM_198467, intron 1 of 7)	AluSz|SINE|Alu	-36705	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
205446	chr7	17041371	17041600	+	0	NA	Intergenic	Intergenic	-159502	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
54162	chr12	76688851	76689030	+	0	NA	Intergenic	Intergenic	-75175	NM_015336	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
74339	chr15	58545071	58545630	+	0	NA	intron (NM_000236, intron 4 of 8)	AluJo|SINE|Alu	-46615	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
174417	chr4	39450771	39451000	+	0	NA	3' UTR (NM_175737, exon 5 of 5)	3' UTR (NM_175737, exon 5 of 5)	8037	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
220393	chr8	100246371	100246730	+	0	NA	Intergenic	AluJr|SINE|Alu	55643	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
222095	chr8	130442601	130443840	+	0	NA	intron (NM_001362924, intron 1 of 30)	CpG	440	NM_001362924	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
27522	chr10	32307671	32307830	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	39408	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
40456	chr11	64214121	64214380	+	0	NA	intron (NM_001382363, intron 5 of 13)	AluSp|SINE|Alu	6544	NM_001382364	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
236328	chrX	69163601	69164660	+	0	NA	intron (NM_145119, intron 1 of 1)	intron (NM_145119, intron 1 of 1)	1323	NM_145119	64219		NM_022368	ENSG00000181191	PJA1	PRAJA1|RNF70	praja ring finger ubiquitin ligase 1	protein-coding
32483	chr10	102670901	102671450	+	0	NA	Intergenic	Intergenic	26680	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
235553	chrX	47248051	47248680	+	0	NA	TTS (NM_001371072)	TTS (NM_001371072)	15356	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
132846	chr2	110840671	110840830	+	0	NA	intron (NM_001371254, intron 9 of 18)	intron (NM_001371254, intron 9 of 18)	108177	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
166205	chr3	111977371	111977730	+	0	NA	Intergenic	Intergenic	-1476	NR_073570	55347		NM_018394	ENSG00000144827	ABHD10	-	abhydrolase domain containing 10, depalmitoylase	protein-coding
145873	chr20	45939771	45940080	+	0	NA	intron (NM_022104, intron 4 of 16)	MIRc|SINE|MIR	5242	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
226639	chr9	74322771	74323130	+	0	NA	Intergenic	Intergenic	-48581	NR_121182	101927358		NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
212224	chr7	120959271	120959630	+	0	NA	intron (NM_019071, intron 4 of 11)	intron (NM_019071, intron 4 of 11)	8673	NM_019071	54556		NM_019071	ENSG00000071243	ING3	Eaf4|ING2|MEAF4|p47ING3	inhibitor of growth family member 3	protein-coding
160342	chr3	27718301	27718880	+	0	NA	exon (NM_005442, exon 5 of 6)	exon (NM_005442, exon 5 of 6)	3733	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
96900	chr17	42124101	42125450	+	0	NA	TTS (NM_001252039)	TTS (NM_001252039)	1971	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
200526	chr6	136243501	136243750	+	0	NA	intron (NM_138419, intron 3 of 7)	AluJr|SINE|Alu	6686	NM_001318738	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
215782	chr8	2144171	2144330	+	0	NA	intron (NM_003970, intron 36 of 36).2	intron (NM_003970, intron 36 of 36).2	67661	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
201623	chr6	149441651	149442150	+	0	NA	Intergenic	Intergenic	41638	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
36270	chr11	3792901	3793100	+	0	NA	intron (NR_157590, intron 1 of 31)	AluSz|SINE|Alu	4546	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
146124	chr20	48624401	48624880	+	0	NA	3' UTR (NM_020820, exon 40 of 40)	3' UTR (NM_020820, exon 40 of 40)	203359	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
53247	chr12	62600001	62600830	+	0	NA	TTS (NM_001278471)	TTS (NM_001278471)	3019	NR_121682	283416		NM_175895	ENSG00000221949	LINC01465	C12orf61	long intergenic non-protein coding RNA 1465	ncRNA
137432	chr2	196798921	196800000	+	0	NA	intron (NM_001206774, intron 1 of 8)	intron (NM_001206774, intron 1 of 8)	223	NM_012086	9330		NM_012086	ENSG00000119041	GTF3C3	TFIIIC102|TFIIICgamma|TFiiiC2-102	general transcription factor IIIC subunit 3	protein-coding
138624	chr2	210012201	210012600	+	0	NA	intron (NM_001278283, intron 3 of 7)	Charlie1a|DNA|hAT-Charlie	9762	NM_199229	6120		NM_006916	ENSG00000197713	RPE	RPE2-1	ribulose-5-phosphate-3-epimerase	protein-coding
179666	chr4	189949901	189950130	+	0	NA	intron (NM_004477, intron 2 of 8)	L1M4|LINE|L1	9143	NM_004477	2483		NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
121272	chr19	46707621	46708080	+	0	NA	intron (NM_001079881, intron 4 of 18)	AluSz|SINE|Alu	1504	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
63246	chr13	113939951	113940350	+	0	NA	Intergenic	Intergenic	-11159	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
175809	chr4	77822801	77823350	+	0	NA	Intergenic	Intergenic	-2806	NM_001365006	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
197688	chr6	85633101	85633880	+	0	NA	intron (NM_001253771, intron 5 of 10)	AluSx|SINE|Alu	7961	NM_001159675	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
229031	chr9	114319121	114319380	+	0	NA	Intergenic	L2|LINE|L2	-3848	NM_000607	5004		NM_000607	ENSG00000229314	ORM1	A1AG1|AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
229304	chr9	120865671	120866130	+	0	NA	intron (NM_001286840, intron 8 of 14)	intron (NM_001286840, intron 8 of 14)	3011	NR_104601	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
120437	chr19	44166101	44166300	+	0	NA	intron (NM_001032372, intron 2 of 5)	intron (NM_001032372, intron 2 of 5)	1036	NM_001032372	7769		NM_015919	ENSG00000167380	ZNF226	-	zinc finger protein 226	protein-coding
219351	chr8	70321451	70321750	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	81790	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
111729	chr19	4347521	4347980	+	0	NA	intron (NM_032868, intron 3 of 11)	intron (NM_032868, intron 3 of 11)	4188	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
36471	chr11	6201601	6202200	+	0	NA	Intergenic	Intergenic	2676	NM_001005178	120787		NM_001005178	ENSG00000175485	OR52W1	OR11-71|OR52W1P	olfactory receptor family 52 subfamily W member 1	protein-coding
221498	chr8	124555671	124555830	+	0	NA	exon (NM_001282971, exon 14 of 15)	exon (NM_001282971, exon 14 of 15)	16627	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
125769	chr2	23497151	23497650	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	112221	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
30025	chr10	73792701	73793100	+	0	NA	intron (NM_015037, intron 10 of 25)	intron (NM_015037, intron 10 of 25)	7276	NM_015037	23053		NM_015037	ENSG00000214655	ZSWIM8	KIAA0913	zinc finger SWIM-type containing 8	protein-coding
228695	chr9	108900851	108901030	+	0	NA	intron (NM_001318360, intron 18 of 36)	CpG	33184	NM_001330749	8518		NM_003640	ENSG00000070061	ELP1	DYS|FD|IKAP|IKBKAP|IKI3|TOT1	elongator acetyltransferase complex subunit 1	protein-coding
19607	chr1	179867551	179868130	+	0	NA	intron (NM_001349931, intron 1 of 1)	L2|LINE|L2	1000	NM_001349933	163590		NM_022347	ENSG00000169905	TOR1AIP2	IFRG15|LULL1|NET9	torsin 1A interacting protein 2	protein-coding
197415	chr6	73525551	73525850	+	0	NA	Intergenic	Intergenic	-4668	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
78369	chr15	91469051	91469230	+	0	NA	intron (NR_110106, intron 1 of 3)	LTR78|LTR|ERV1	5801	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
172407	chr4	1792851	1794180	+	0	NA	intron (NM_022965, intron 1 of 15)	CpG	203	NM_001163213	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
58132	chr12	124901351	124901650	+	0	NA	Intergenic	AluJb|SINE|Alu	13150	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
169472	chr3	169228051	169228230	+	0	NA	intron (NM_001205194, intron 1 of 15)	intron (NM_001205194, intron 1 of 15)	-80669	NM_001366469	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
55525	chr12	105319851	105320250	+	0	NA	intron (NR_131986, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	6967	NR_131986	105369954		NR_131986	ENSG00000257642	C12orf75-AS1	KCCAT198	C12orf75 antisense RNA 1	ncRNA
132024	chr2	100813551	100813850	+	0	NA	Intergenic	Intergenic	-6439	NM_002518	4862		NM_002518	ENSG00000170485	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
37081	chr11	12717671	12718250	+	0	NA	intron (NM_021961, intron 2 of 12)	MIR|SINE|MIR	43539	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
195398	chr6	36772251	36772630	+	0	NA	intron (NM_001376889, intron 11 of 21)	intron (NM_001376889, intron 11 of 21)	-6645	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
81300	chr16	4685501	4686080	+	0	NA	intron (NM_001142289, intron 15 of 15)	intron (NM_001142289, intron 15 of 15)	-7903	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
143606	chr20	31713851	31714350	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-7407	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
187257	chr5	141476621	141476900	+	0	NA	exon (NM_032402, exon 1 of 1)	exon (NM_032402, exon 1 of 1)	794	NM_002588	5098		NM_002588	ENSG00000240184	PCDHGC3	PC43|PCDH-GAMMA-C3|PCDH2	protocadherin gamma subfamily C, 3	protein-coding
72278	chr15	30828301	30828700	+	0	NA	TTS (NR_072991)	TTS (NR_072991)	10464	NR_072991	390561		NR_072991		HERC2P10	-	HERC2 pseudogene 10	pseudo
118627	chr19	37209901	37211400	+	0	NA	promoter-TSS (NM_152279)	promoter-TSS (NM_152279)	-114	NM_152279	92285		NM_152279	ENSG00000245680	ZNF585B	SZFP41|Zfp27	zinc finger protein 585B	protein-coding
27425	chr10	31587421	31587680	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-187795	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
232343	chr9	135481871	135482030	+	0	NA	intron (NM_014811, intron 1 of 3)	intron (NM_014811, intron 1 of 3)	2168	NM_014811	9858		NM_014811	ENSG00000196422	PPP1R26	KIAA0649|NRBE3	protein phosphatase 1 regulatory subunit 26	protein-coding
13031	chr1	111217351	111217980	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-9994	NM_001025197	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
102229	chr17	75238571	75239400	+	0	NA	exon (NM_001172704, exon 14 of 16)	exon (NM_001172704, exon 14 of 16)	22621	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
27373	chr10	30811751	30812050	+	0	NA	Intergenic	Intergenic	88681	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
232227	chr9	134377171	134377430	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-1995	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
230045	chr9	127393871	127394230	+	0	NA	TTS (NM_032293)	TTS (NM_032293)	-3088	NM_001271711	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
34925	chr11	420971	421500	+	0	NA	intron (NM_001347882, intron 14 of 21)	CpG-3738	-3838	NM_001135053	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
43166	chr11	75347921	75348900	+	0	NA	intron (NM_020251, intron 1 of 14)	L2c|LINE|L2	3251	NM_004041	408		NM_004041	ENSG00000137486	ARRB1	ARB1|ARR1	arrestin beta 1	protein-coding
104070	chr17	80218921	80221550	+	0	NA	promoter-TSS (NM_173626)	promoter-TSS (NM_173626)	98	NM_001352921	6448		NM_000199	ENSG00000181523	SGSH	HSS|MPS3A|SFMD	N-sulfoglucosamine sulfohydrolase	protein-coding
199785	chr6	125995901	125996380	+	0	NA	intron (NM_001350594, intron 3 of 12)	intron (NM_001350594, intron 3 of 12)	9600	NM_001031712	60487		NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
214571	chr7	150606101	150606300	+	0	NA	Intergenic	L1P1|LINE|L1	26185	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
120896	chr19	45591971	45592130	+	0	NA	5' UTR (NM_005282, exon 2 of 2)	5' UTR (NM_005282, exon 2 of 2)	-7248	NM_001017989	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
143956	chr20	32824021	32824830	+	0	NA	intron (NM_012325, intron 1 of 6)	MIRb|SINE|MIR	4471	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
204918	chr7	6163401	6163900	+	0	NA	3' UTR (NM_001367580, exon 13 of 13)	3' UTR (NM_001367580, exon 13 of 13)	8487	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
208058	chr7	56073721	56075030	+	0	NA	intron (NM_001366649, intron 4 of 7)	intron (NM_001366649, intron 4 of 7)	10089	NM_001366649	25870		NM_015411	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
20481	chr1	198633451	198634350	+	0	NA	Intergenic	Intergenic	-5068	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
106931	chr18	26303221	26303480	+	0	NA	intron (NR_121653, intron 10 of 15)	intron (NR_121653, intron 10 of 15)	76905	NM_005640	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
234523	chrX	19598321	19598580	+	0	NA	intron (NM_001353892, intron 10 of 17)	Tigger1|DNA|TcMar-Tigger	72549	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
207124	chr7	42909771	42909930	+	0	NA	exon (NM_001099858, exon 2 of 2)	exon (NM_001099858, exon 2 of 2)	1993	NM_001363436	79020		NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
169565	chr3	170356351	170358750	+	0	NA	promoter-TSS (NM_005414)	promoter-TSS (NM_005414)	-165	NM_001145098	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
122738	chr19	50090551	50091230	+	0	NA	Intergenic	Intergenic	1719	NR_024228	100169958		NR_024228		SNAR-A8	-	small NF90 (ILF3) associated RNA A8	snRNA
2779	chr1	10804101	10804500	+	0	NA	Intergenic	Intergenic	-7654	NM_017766	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
171195	chr3	195696801	195697700	+	0	NA	intron (NR_122105, intron 2 of 4)	AluSx|SINE|Alu	-2151	NR_030296	693155		NR_030296	ENSG00000207650	MIR570	MIRN570|hsa-mir-570	microRNA 570	ncRNA
189177	chr5	171408751	171408850	+	0	NA	intron (NM_002520, intron 10 of 10)	intron (NM_002520, intron 10 of 10)	-10847	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
159046	chr3	11490651	11490750	+	0	NA	intron (NM_001349238, intron 17 of 17)	L1HS|LINE|L1	78098	NM_001128221	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
232049	chr9	133458371	133458830	+	0	NA	intron (NM_139026, intron 28 of 28).2	intron (NM_139026, intron 28 of 28).2	-1365	NM_001242370	11094		NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
164808	chr3	70949421	70949680	+	0	NA	Intergenic	L2a|LINE|L2	115374	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
34717	chr10	133565101	133565850	+	0	NA	exon (NM_001143764, exon 1 of 13)	exon (NM_001143764, exon 1 of 13)	108	NM_001143764	93426		NM_130784	ENSG00000171772	SYCE1	C10orf94|CT76|POF12|SPGF15	synaptonemal complex central element protein 1	protein-coding
217775	chr8	33334621	33335080	+	0	NA	Intergenic	Intergenic	138296	NM_032664	84750		NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
24606	chr1	246497371	246498150	+	0	NA	intron (NM_001167740, intron 1 of 11)	FRAM|SINE|Alu	9519	NM_001375962	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
44789	chr11	112962421	112962880	+	0	NA	intron (NM_001076682, intron 1 of 18)	CpG	810	NR_120563	101928847		NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA
96673	chr17	40856951	40857280	+	0	NA	Intergenic	AluSz|SINE|Alu	10108	NM_000223	3859		NM_000223	ENSG00000187242	KRT12	K12|MECD1	keratin 12	protein-coding
100225	chr17	59290401	59290600	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-41155	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
102047	chr17	74868971	74869130	+	0	NA	promoter-TSS (NM_001258016)	promoter-TSS (NM_001258016)	-297	NM_001258016	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
7783	chr1	36230401	36230600	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluSx1|SINE|Alu	6057	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
16490	chr1	154759001	154759750	+	0	NA	intron (NM_001204087, intron 3 of 8)	intron (NM_001204087, intron 3 of 8)	100501	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
42652	chr11	72436901	72437100	+	0	NA	Intergenic	AluJo|SINE|Alu	-2316	NM_001258394	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
68711	chr14	90671301	90671700	+	0	NA	intron (NM_001010854, intron 9 of 19)	intron (NM_001010854, intron 9 of 19)	-25833	NR_135190	105370622		NR_135190	ENSG00000258716	LOC105370622	-	uncharacterized LOC105370622	ncRNA
155158	chr22	37676601	37678950	+	0	NA	intron (NM_002305, intron 2 of 3)	AluSx1|SINE|Alu	2139	NM_002305	3956		NM_002305	ENSG00000100097	LGALS1	GAL1|GBP	galectin 1	protein-coding
120868	chr19	45535971	45536530	+	0	NA	intron (NM_001017989, intron 1 of 1)	AluSx|SINE|Alu	28771	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
12096	chr1	99857551	99857650	+	0	NA	intron (NM_000646, intron 2 of 33)	SVA_C|Retroposon|SVA	6625	NM_000646	178		NM_000028	ENSG00000162688	AGL	GDE	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein-coding
137997	chr2	201255321	201255730	+	0	NA	intron (NM_033355, intron 2 of 9)	intron (NM_033355, intron 2 of 9)	-2510	NM_001080125	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
207999	chr7	55516901	55517980	+	0	NA	intron (NM_001321242, intron 2 of 4)	intron (NM_001321242, intron 2 of 4)	9440	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
194797	chr6	34231821	34232400	+	0	NA	Intergenic	Intergenic	-4763	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
211744	chr7	107177051	107177480	+	0	NA	intron (NM_012257, intron 1 of 10)	MIRc|SINE|MIR	8262	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
170708	chr3	187973851	187973950	+	0	NA	intron (NR_135537, intron 1 of 1)	MIRc|SINE|MIR	2507	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
232192	chr9	134305971	134306200	+	0	NA	Intergenic	(ATG)n|Simple_repeat|Simple_repeat	-10688	NR_146518	105376310		NR_146518	ENSG00000223729	LINC02247	-	long intergenic non-protein coding RNA 2247	ncRNA
16465	chr1	154607431	154609040	+	0	NA	promoter-TSS (NM_001365047)	promoter-TSS (NM_001365047)	-49	NM_015840	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
132942	chr2	111450451	111451200	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	44336	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
236757	chrX	78650851	78651360	+	0	NA	Intergenic	Intergenic	8223	NM_152694	203430		NM_152694	ENSG00000179300	RTL3	Mar3|Mart3|SIRH9|ZCCHC5|ZHC5	retrotransposon Gag like 3	protein-coding
169104	chr3	155353051	155353150	+	0	NA	Intergenic	Intergenic	-59417	NM_001352129	100507537		NM_001352129	ENSG00000240045	STRIT1	DWORF	small transmembrane regulator of ion transport 1	protein-coding
62309	chr13	99028751	99029200	+	0	NA	intron (NM_001318849, intron 1 of 54)	LTR50|LTR|ERVL	-13190	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
79763	chr16	1361771	1362630	+	0	NA	intron (NM_032520, intron 6 of 10)	CpG-8986	10269	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
106759	chr18	23583221	23583730	+	0	NA	intron (NM_000271, intron 1 of 24)	intron (NM_000271, intron 1 of 24)	3031	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
23028	chr1	226409451	226409850	+	0	NA	Intergenic	AluJb|SINE|Alu	-1557	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
149225	chr21	25560171	25560580	+	0	NA	Intergenic	Intergenic	-1770	NR_001458	114614		NR_001458	ENSG00000234883	MIR155HG	BIC|BIC-155|MIRHG2|NCRNA00172|miPEP155	MIR155 host gene	ncRNA
221466	chr8	124470271	124470500	+	0	NA	intron (NR_108047, intron 1 of 1)	AluSx|SINE|Alu	3969	NR_108048	101927612		NR_108047	ENSG00000245149	RNF139-DT	RNF139-AS1	RNF139 divergent transcript	ncRNA
107149	chr18	35192551	35192650	+	0	NA	Intergenic	Intergenic	-48434	NM_032347	84307		NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
7616	chr1	35499201	35500200	+	0	NA	intron (NM_024874, intron 3 of 20)	intron (NM_024874, intron 3 of 20)	57703	NM_024874	79932		NM_024874	ENSG00000142687	KIAA0319L	AAVR|AAVRL	KIAA0319 like	protein-coding
94602	chr17	29741401	29741850	+	0	NA	intron (NM_033389, intron 2 of 14)	AluSq4|SINE|Alu	19807	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
237147	chrX	107167301	107167700	+	0	NA	intron (NM_017681, intron 4 of 8)	intron (NM_017681, intron 4 of 8)	38933	NR_033676	54830		NM_017681	ENSG00000198088	NUP62CL	-	nucleoporin 62 C-terminal like	protein-coding
215426	chr7	157668801	157669200	+	0	NA	intron (NM_130842, intron 12 of 21)	intron (NM_130842, intron 12 of 21)	-94578	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
148935	chr21	9897521	9897600	+	0	NA	Intergenic	MER31B|LTR|ERV1	-76499	NR_038377	441058		NM_001004347		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
129752	chr2	70991851	70992150	+	0	NA	intron (NM_144582, intron 2 of 5)	intron (NM_144582, intron 2 of 5)	2873	NM_144582	113419		NM_144582	ENSG00000144043	TEX261	TEG-261	testis expressed 261	protein-coding
144182	chr20	34110221	34111090	+	0	NA	intron (NM_003908, intron 1 of 8)	intron (NM_003908, intron 1 of 8)	1588	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
180933	chr5	34838751	34839730	+	0	NA	promoter-TSS (NM_001317949)	promoter-TSS (NM_001317949)	76	NM_144725	153657		NM_144725	ENSG00000205838	TTC23L	MC25-1	tetratricopeptide repeat domain 23 like	protein-coding
73320	chr15	41906771	41907130	+	0	NA	intron (NM_139265, intron 5 of 5)	intron (NM_139265, intron 5 of 5)	-12897	NM_016642	51332		NM_016642	ENSG00000137877	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin beta, non-erythrocytic 5	protein-coding
211643	chr7	106176651	106176980	+	0	NA	Intergenic	Intergenic	-64239	NM_001381918	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
202244	chr6	156882821	156883080	+	0	NA	intron (NM_001371656, intron 4 of 20)	intron (NM_001371656, intron 4 of 20)	-103219	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
196834	chr6	47197801	47198200	+	0	NA	Intergenic	Intergenic	111905	NM_014452	27242		NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
195366	chr6	36681671	36682050	+	0	NA	intron (NM_001220778, intron 1 of 2)	AluY|SINE|Alu	3146	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
125835	chr2	24361851	24361950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1364	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
210546	chr7	100292121	100292380	+	0	NA	Intergenic	Intergenic	-15452	NM_001004351	441272		NM_001004351	ENSG00000214300	SPDYE3	SPDYB2	speedy/RINGO cell cycle regulator family member E3	protein-coding
41236	chr11	65776821	65777280	+	0	NA	3' UTR (NM_138368, exon 2 of 2)	3' UTR (NM_138368, exon 2 of 2)	3926	NM_138368	91056		NM_138368	ENSG00000254470	AP5B1	AP-5|PP1030	adaptor related protein complex 5 subunit beta 1	protein-coding
219678	chr8	80519301	80519500	+	0	NA	exon (NM_001105539, exon 6 of 6)	exon (NM_001105539, exon 6 of 6)	33174	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
107092	chr18	35044021	35044300	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	2747	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
89909	chr16	89703451	89704130	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-2085	NM_152339	124044		NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
115474	chr19	15361221	15362430	+	0	NA	intron (NM_005858, intron 10 of 13)	intron (NM_005858, intron 10 of 13)	17962	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
77468	chr15	84485651	84485750	+	0	NA	intron (NM_001267536, intron 9 of 10)	MamGypLTR3|LTR|Gypsy	-16875	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
177926	chr4	131757221	131757300	+	0	NA	Intergenic	SST1|Satellite|centr	-7578	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
194542	chr6	33319451	33320100	+	0	NA	exon (NM_001141970, exon 6 of 8).3	exon (NM_001141970, exon 6 of 8).3	-1833	NM_001145338	9278		NM_005453	ENSG00000236104	ZBTB22	BING1|ZBTB22A|ZNF297|ZNF297A|fru|fruitless	zinc finger and BTB domain containing 22	protein-coding
162696	chr3	48967021	48967280	+	0	NA	exon (NM_001349213, exon 7 of 17)	exon (NM_001349213, exon 7 of 17)	-22758	NM_177938	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
186527	chr5	138410771	138411220	+	0	NA	intron (NM_016604, intron 11 of 23)	LTR13|LTR|ERVK	-28062	NM_016606	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
90565	chr17	1514421	1514850	+	0	NA	intron (NM_016532, intron 1 of 11)	intron (NM_016532, intron 1 of 11)	1977	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
77100	chr15	78925871	78926030	+	0	NA	intron (NM_001319137, intron 10 of 12)	intron (NM_001319137, intron 10 of 12)	19096	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
42917	chr11	73390451	73390850	+	0	NA	intron (NM_152222, intron 3 of 10)	intron (NM_152222, intron 3 of 10)	13982	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
32989	chr10	110517171	110517330	+	0	NA	Intergenic	MIRb|SINE|MIR	19343	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
93152	chr17	17755051	17755730	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	10912	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
25440	chr10	6585771	6586130	+	0	NA	TTS (NR_036502)	TTS (NR_036502)	-5304	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
4249	chr1	19599501	19599700	+	0	NA	intron (NM_001204089, intron 1 of 3)	intron (NM_001204089, intron 1 of 3)	2621	NM_001204088	100532736		NM_001204088	ENSG00000158747	MICOS10-NBL1	C1orf151-NBL1|DAN|DAND1|MINOS1-NBL1|NBL1	MICOS10-NBL1 readthrough	protein-coding
6447	chr1	28244951	28245050	+	0	NA	Intergenic	Intergenic	8876	NM_016311	93974		NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
212462	chr7	128458901	128460200	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	3672	NM_013332	29923		NM_013332	ENSG00000135245	HILPDA	C7orf68|HIG-2|HIG2	hypoxia inducible lipid droplet associated	protein-coding
166211	chr3	112002621	112003700	+	0	NA	intron (NM_001008272, intron 3 of 4)	intron (NM_001008272, intron 3 of 4)	4000	NM_001008273	29114		NM_013259	ENSG00000144834	TAGLN3	NP22|NP24|NP25	transgelin 3	protein-coding
148502	chr20	64074471	64074630	+	0	NA	intron (NM_001039467, intron 3 of 5)	CpG-18154	2460	NR_106871	102466741		NR_106871	ENSG00000274034	MIR6813	hsa-mir-6813	microRNA 6813	ncRNA
351	chr1	1008601	1009450	+	0	NA	Intergenic	AluJb|SINE|Alu	-4472	NM_005101	9636		NM_005101	ENSG00000187608	ISG15	G1P2|IFI15|IMD38|IP17|UCRP|hUCRP	ISG15 ubiquitin like modifier	protein-coding
159373	chr3	13346101	13347380	+	0	NA	intron (NM_024923, intron 20 of 39)	intron (NM_024923, intron 20 of 39)	-63483	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
140256	chr2	232283521	232284180	+	0	NA	intron (NR_046477, intron 12 of 18)	L1MD1|LINE|L1	-94901	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
90590	chr17	1575751	1576050	+	0	NA	intron (NM_152346, intron 13 of 13).2	CpG	-13108	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
192322	chr6	21950871	21951230	+	0	NA	intron (NR_015410, intron 5 of 11)	MER58A|DNA|hAT-Charlie	196143	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
9953	chr1	54763921	54765400	+	0	NA	promoter-TSS (NM_152268)	promoter-TSS (NM_152268)	-137	NM_152268	25973		NM_152268	ENSG00000162396	PARS2	DEE75|EIEE75|MT-PRORS|proRS	prolyl-tRNA synthetase 2, mitochondrial	protein-coding
204692	chr7	5509451	5509750	+	0	NA	intron (NM_024963, intron 1 of 4)	AluSx4|SINE|Alu	4209	NM_001363441	80028		NM_024963	ENSG00000155034	FBXL18	Fbl18	F-box and leucine rich repeat protein 18	protein-coding
17247	chr1	156356571	156357730	+	0	NA	Intergenic	Intergenic	-12061	NM_020407	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
151348	chr21	45645571	45646630	+	0	NA	intron (NM_001382281, intron 1 of 14)	(TC)n|Simple_repeat|Simple_repeat	2375	NM_001348240	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
196007	chr6	42009921	42011080	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	38394	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
62107	chr13	95189001	95189950	+	0	NA	intron (NM_001301830, intron 8 of 19)	intron (NM_001301830, intron 8 of 19)	-20869	NR_145733	109616987		NR_145733		SNORD13G	-	small nucleolar RNA, C/D box 13G	snoRNA
32238	chr10	101833951	101834050	+	0	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	5871	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
197293	chr6	71287771	71290180	+	0	NA	exon (NM_024576, exon 1 of 7)	exon (NM_024576, exon 1 of 7)	164	NM_024576	79627		NM_024576	ENSG00000119900	OGFRL1	dJ331H24.1	opioid growth factor receptor like 1	protein-coding
212575	chr7	128912851	128913480	+	0	NA	Intergenic	Intergenic	-2456	NM_199349	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
52433	chr12	55829151	55831180	+	0	NA	promoter-TSS (NM_032364)	promoter-TSS (NM_032364)	-529	NM_032364	85406		NM_032364	ENSG00000135392	DNAJC14	DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding
179816	chr5	446521	447250	+	0	NA	intron (NM_007277, intron 2 of 12)	AluSx1|SINE|Alu	3709	NM_007277	11336		NM_007277	ENSG00000180104	EXOC3	SEC6|SEC6L1|Sec6p	exocyst complex component 3	protein-coding
23156	chr1	226729371	226729680	+	0	NA	intron (NM_002221, intron 2 of 7)	MIR3|SINE|MIR	9650	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
30395	chr10	78300071	78300500	+	0	NA	Intergenic	LTR12|LTR|ERV1	32943	NR_073447	414243		NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
55899	chr12	109725121	109726100	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	11785	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
165639	chr3	101792501	101792700	+	0	NA	intron (NR_145993, intron 4 of 6)	L1PA14|LINE|L1	12936	NM_001348998	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
51891	chr12	53544821	53545150	+	0	NA	intron (NM_001366561, intron 2 of 10)	intron (NM_001366561, intron 2 of 10)	31001	NR_046221	100652999		NR_046221	ENSG00000257550	LOC100652999	-	uncharacterized LOC100652999	ncRNA
1154	chr1	2198571	2200530	+	0	NA	5' UTR (NM_001282670, exon 4 of 8)	5' UTR (NM_001282670, exon 4 of 8)	-4775	NR_046427	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
51405	chr12	52002151	52002650	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4546	NM_181711	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
179531	chr4	184960901	184961100	+	0	NA	Intergenic	Intergenic	-22560	NR_039660	100616111		NR_039660	ENSG00000263458	MIR4455	-	microRNA 4455	ncRNA
154553	chr22	36211051	36211600	+	0	NA	Intergenic	LTR38|LTR|ERV1	-6492	NM_145660	80832		NM_030643	ENSG00000100336	APOL4	APOL-IV|APOLIV	apolipoprotein L4	protein-coding
225205	chr9	34123751	34124350	+	0	NA	intron (NM_015397, intron 2 of 8)	intron (NM_015397, intron 2 of 8)	2648	NM_015397	25853		NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
127538	chr2	42331871	42332630	+	0	NA	3' UTR (NM_001145076, exon 22 of 22)	3' UTR (NM_001145076, exon 22 of 22)	27788	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
82210	chr16	15007001	15007400	+	0	NA	intron (NM_001285450, intron 6 of 13).2	AluY|SINE|Alu	3197	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
76431	chr15	74796121	74796880	+	0	NA	intron (NM_001354988, intron 3 of 14)	AluJo|SINE|Alu	-7743	NR_039738	100616183		NR_039738	ENSG00000264386	MIR4513	-	microRNA 4513	ncRNA
57540	chr12	122160001	122160200	+	0	NA	Intergenic	Intergenic	-7619	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
126181	chr2	26608721	26609180	+	0	NA	intron (NM_001029881, intron 3 of 6)	intron (NM_001029881, intron 3 of 6)	32416	NM_001029881	130106		NM_001029881	ENSG00000157884	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
109256	chr19	526271	526980	+	0	NA	Intergenic	AluJo|SINE|Alu	-5135	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
195730	chr6	39225821	39226530	+	0	NA	intron (NM_003740, intron 1 of 4)	L2b|LINE|L2	3300	NM_003740	8645		NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding
87013	chr16	68249251	68249750	+	0	NA	intron (NM_001363551, intron 2 of 5)	intron (NM_001363551, intron 2 of 5)	4127	NM_012320	23659		NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	phospholipase A2 group XV	protein-coding
30360	chr10	77866671	77867030	+	0	NA	intron (NM_004747, intron 2 of 31).2	intron (NM_004747, intron 2 of 31).2	59905	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
152257	chr22	20241521	20241780	+	0	NA	3' UTR (NM_023004, exon 2 of 2)	3' UTR (NM_023004, exon 2 of 2)	7561	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
214820	chr7	151237701	151238300	+	0	NA	promoter-TSS (NR_030407)	promoter-TSS (NR_030407)	-421	NR_030407	768213		NR_030407	ENSG00000284191	MIR671	MIRN671|hsa-mir-671|mir-671	microRNA 671	ncRNA
51198	chr12	50510471	50510630	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	5565	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
162940	chr3	49476551	49477200	+	0	NA	5' UTR (NM_001177640, exon 2 of 4)	5' UTR (NM_001177640, exon 2 of 4)	6608	NM_004393	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
153369	chr22	24486501	24486700	+	0	NA	intron (NR_028483, intron 1 of 7)	CR1-3_Croc|LINE|CR1	8474	NR_028483	646023		NM_001039784	ENSG00000178803	ADORA2A-AS1	C22orf45|hLinfRNA1	ADORA2A antisense RNA 1	ncRNA
173175	chr4	6708721	6710380	+	0	NA	exon (NM_203462, exon 1 of 2)	exon (NM_203462, exon 1 of 2)	315	NM_203462	114932		NM_152301	ENSG00000178988	MRFAP1L1	PP784	Morf4 family associated protein 1 like 1	protein-coding
26705	chr10	22651471	22652100	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	62323	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
23398	chr1	228212521	228215000	+	0	NA	promoter-TSS (NR_073155)	promoter-TSS (NR_073155)	-96	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
233888	chrX	1588571	1588950	+	0	NA	Intergenic	(CCCTC)n|Simple_repeat|Simple_repeat	-2844	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
73065	chr15	40910151	40910250	+	0	NA	TTS (NR_135836)	TTS (NR_135836)	3391	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
84827	chr16	31104871	31105030	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-3436	NM_005881	10295		NM_005881	ENSG00000103507	BCKDK	BCKDKD|BDK	branched chain keto acid dehydrogenase kinase	protein-coding
89136	chr16	88512571	88513880	+	0	NA	non-coding (NR_148997, exon 4 of 4)	non-coding (NR_148997, exon 4 of 4)	17828	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
164977	chr3	71303551	71304050	+	0	NA	intron (NR_126463, intron 4 of 4)	intron (NR_126463, intron 4 of 4)	971	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
5985	chr1	26962851	26963350	+	0	NA	Intergenic	L1ME3F|LINE|L1	-2632	NM_152365	126695		NM_152365	ENSG00000175707	KDF1	C1orf172|ECTD12	keratinocyte differentiation factor 1	protein-coding
48043	chr12	6966471	6966630	+	0	NA	TTS (NR_003010)	TTS (NR_003010)	1056	NR_003010	677777		NR_003010	ENSG00000238795	SCARNA12	U89	small Cajal body-specific RNA 12	ncRNA
91464	chr17	4832901	4834350	+	0	NA	exon (NM_153827, exon 1 of 32)	exon (NM_153827, exon 1 of 32)	285	NM_001024937	50488		NM_015716	ENSG00000141503	MINK1	B55|MAP4K6|MEKKK 6|MINK|YSK2|ZC3	misshapen like kinase 1	protein-coding
210579	chr7	100362951	100363050	+	0	NA	intron (NM_001371931, intron 4 of 4)	L1MB2|LINE|L1	4997	NM_178238	29990		NM_013440	ENSG00000121716	PILRB	FDFACT1|FDFACT2	paired immunoglobin like type 2 receptor beta	protein-coding
22662	chr1	223773501	223774100	+	0	NA	intron (NM_001748, intron 20 of 20)	AluSq|SINE|Alu	61261	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
139470	chr2	223970151	223970730	+	0	NA	Intergenic	Intergenic	12977	NM_022915	65080		NM_022915	ENSG00000135900	MRPL44	COXPD16|L44MT|MRP-L44|mL44	mitochondrial ribosomal protein L44	protein-coding
18910	chr1	168388351	168389180	+	0	NA	Intergenic	Intergenic	13241	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
75696	chr15	67841151	67842100	+	0	NA	Intergenic	Intergenic	-1580	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
145324	chr20	41088371	41088930	+	0	NA	intron (NM_003286, intron 8 of 20)	intron (NM_003286, intron 8 of 20)	-48893	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
72758	chr15	39629121	39630250	+	0	NA	intron (NM_001324338, intron 10 of 11)	intron (NM_001324338, intron 10 of 11)	48606	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
107176	chr18	35535401	35535600	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-37540	NM_001098817	125476		NM_194281	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
153063	chr22	23289801	23291150	+	0	NA	intron (NM_021574, intron 14 of 21)	intron (NM_021574, intron 14 of 21)	27708	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
73090	chr15	40938071	40938780	+	0	NA	3' UTR (NM_019074, exon 11 of 11)	3' UTR (NM_019074, exon 11 of 11)	9085	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
183233	chr5	76369721	76369980	+	0	NA	Intergenic	MER21B|LTR|ERVL	-33435	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
207670	chr7	45099921	45100350	+	0	NA	TTS (NM_001261834)	TTS (NM_001261834)	4347	NR_002919	654319		NR_002919	ENSG00000206838	SNORA5A	ACA5|ACA5A/B/C	small nucleolar RNA, H/ACA box 5A	snoRNA
61219	chr13	49570101	49570700	+	0	NA	intron (NM_001352502, intron 1 of 11)	intron (NM_001352502, intron 1 of 11)	15158	NM_001352500	55213		NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RDEOA	RCC1 and BTB domain containing protein 1	protein-coding
169	chr1	611771	611930	+	0	NA	Intergenic	Intergenic	17159	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
65211	chr14	49769971	49770350	+	0	NA	intron (NM_014315, intron 1 of 12)	intron (NM_014315, intron 1 of 12)	2007	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
51356	chr12	51678171	51678350	+	0	NA	intron (NM_001330260, intron 2 of 26)	intron (NM_001330260, intron 2 of 26)	87024	NM_001177984	6334		NM_014191	ENSG00000196876	SCN8A	BFIS5|CERIII|CIAT|DEE13|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4	sodium voltage-gated channel alpha subunit 8	protein-coding
226715	chr9	75147471	75148090	+	0	NA	TTS (NM_012383)	TTS (NM_012383)	59266	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
184753	chr5	109853221	109853480	+	0	NA	intron (NM_002372, intron 19 of 21)	MER5A|DNA|hAT-Charlie	-29832	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
11713	chr1	91870371	91870980	+	0	NA	intron (NM_001195684, intron 2 of 17)	MIRb|SINE|MIR	15476	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
70144	chr14	100283571	100283730	+	0	NA	TTS (NM_003403)	TTS (NM_003403)	6293	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
235128	chrX	40877971	40878130	+	0	NA	Intergenic	Intergenic	-44854	NR_027761	100132831		NR_027761		TNIP2P1	-	TNIP2 pseudogene 1	pseudo
174638	chr4	40337571	40337730	+	0	NA	intron (NM_017581, intron 3 of 4)	MLT1C|LTR|ERVL-MaLR	2317	NM_017581	55584		NM_017581	ENSG00000174343	CHRNA9	HSA243342|NACHRA9	cholinergic receptor nicotinic alpha 9 subunit	protein-coding
219857	chr8	84790051	84790150	+	0	NA	intron (NM_001354307, intron 4 of 8)	intron (NM_001354307, intron 4 of 8)	84173	NM_001287244	138046		NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein like	protein-coding
186370	chr5	134904021	134906650	+	0	NA	intron (NM_032151, intron 1 of 3)	CpG	204	NM_032151	84105		NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
165701	chr3	102079901	102080100	+	0	NA	Intergenic	Intergenic	-83705	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
184904	chr5	112878701	112879750	+	0	NA	intron (NM_005669, intron 4 of 4)	intron (NM_005669, intron 4 of 4)	17938	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
186845	chr5	139453721	139454900	+	0	NA	intron (NM_001293739, intron 8 of 9)	(TG)n|Simple_repeat|Simple_repeat	8433	NM_001293739	641700		NM_001077693	ENSG00000249751	ECSCR	ARIA|ECSM2	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding
162668	chr3	48922171	48922330	+	0	NA	intron (NM_001317334, intron 1 of 13)	intron (NM_001317334, intron 1 of 13)	-2865	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
78167	chr15	90479971	90480130	+	0	NA	intron (NM_003870, intron 26 of 37)	intron (NM_003870, intron 26 of 37)	-49873	NM_001042574	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
66482	chr14	61607621	61607880	+	0	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-37097	NR_110416	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
50504	chr12	47811771	47812080	+	0	NA	intron (NR_160436, intron 1 of 25)	intron (NR_160436, intron 1 of 25)	7978	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
122390	chr19	49423301	49423530	+	0	NA	promoter-TSS (NM_178449)	promoter-TSS (NM_178449)	26	NM_178449	113091		NM_178449	ENSG00000142538	PTH2	TIP39	parathyroid hormone 2	protein-coding
92666	chr17	10737151	10737530	+	0	NA	intron (NR_073456, intron 2 of 3)	intron (NR_073456, intron 2 of 3)	-7011	NM_001330140	388335		NM_001004313	ENSG00000187824	TMEM220	-	transmembrane protein 220	protein-coding
103925	chr17	79827121	79827700	+	0	NA	non-coding (NR_146504, exon 3 of 3)	non-coding (NR_146504, exon 3 of 3)	3958	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
42725	chr11	72690071	72690230	+	0	NA	intron (NR_161388, intron 25 of 29)	intron (NR_161388, intron 25 of 29)	-10324	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
12326	chr1	101003951	101004550	+	0	NA	intron (NM_015958, intron 4 of 7)	intron (NM_015958, intron 4 of 7)	21534	NM_001077395	51611		NM_015958	ENSG00000117543	DPH5	AD-018|CGI-30|HSPC143|NEDSFF|NPD015	diphthamide biosynthesis 5	protein-coding
115102	chr19	14292951	14293050	+	0	NA	Intergenic	Intergenic	-40743	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
29185	chr10	68958351	68958750	+	0	NA	intron (NM_001256910, intron 1 of 14)	AluSc8|SINE|Alu	2110	NM_001256910	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
184654	chr5	107538851	107539150	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	131937	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
232076	chr9	133526671	133526830	+	0	NA	Intergenic	L2b|LINE|L2	-1791	NM_001080483	389827		NM_001080483	ENSG00000187616	MYMK	MYOMAKER|TMEM226|TMEM8C	myomaker, myoblast fusion factor	protein-coding
223478	chr8	144054101	144054300	+	0	NA	intron (NM_017570, intron 19 of 26)	intron (NM_017570, intron 19 of 26)	3180	NR_106905	102465509		NR_106905	ENSG00000277888	MIR6846	hsa-mir-6846	microRNA 6846	ncRNA
156727	chr22	41799771	41801650	+	0	NA	promoter-TSS (NM_001304797)	promoter-TSS (NM_001304797)	31	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
3787	chr1	16704301	16705200	+	0	NA	intron (NR_026567, intron 4 of 10)	intron (NR_026567, intron 4 of 10)	15407	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
67072	chr14	67933871	67934280	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	110483	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
159079	chr3	11911171	11911350	+	0	NA	Intergenic	Intergenic	-64375	NM_001366031	132001		NM_138807	ENSG00000144559	TAMM41	C3orf31|COXPD56|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
35004	chr11	533201	533830	+	0	NA	exon (NM_005343, exon 4 of 6)	exon (NM_005343, exon 4 of 6)	2052	NM_176795	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
129880	chr2	73110001	73110200	+	0	NA	intron (NM_001371272, intron 1 of 5)	intron (NM_001371272, intron 1 of 5)	2848	NM_001371272	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
58676	chr12	132540521	132540780	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	35244	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
167918	chr3	136171101	136172500	+	0	NA	intron (NM_018133, intron 1 of 1)	intron (NM_018133, intron 1 of 1)	22668	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
119230	chr19	39467421	39468150	+	0	NA	promoter-TSS (NR_145805)	promoter-TSS (NR_145805)	-437	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
147364	chr20	58401171	58401530	+	0	NA	intron (NM_001195677, intron 1 of 2)	intron (NM_001195677, intron 1 of 2)	12121	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
16781	chr1	155514601	155515080	+	0	NA	intron (NM_018489, intron 2 of 27)	HSMAR1|DNA|TcMar-Mariner	-47202	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
144205	chr20	34313871	34314230	+	0	NA	Intergenic	AluSz|SINE|Alu	-2248	NM_001161766	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
71158	chr14	105020221	105022180	+	0	NA	promoter-TSS (NM_145701)	promoter-TSS (NM_145701)	-117	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
40275	chr11	63837001	63837650	+	0	NA	Intergenic	Intergenic	-1603	NM_001039469	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
33768	chr10	122559501	122559700	+	0	NA	Intergenic	Intergenic	-1154	NM_001320644	1755		NM_004406	ENSG00000187908	DMBT1	GP340|SAG|SALSA|muclin	deleted in malignant brain tumors 1	protein-coding
118920	chr19	38732301	38733350	+	0	NA	intron (NM_144691, intron 18 of 20)	intron (NM_144691, intron 18 of 20)	11649	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
190771	chr6	499601	500580	+	0	NA	intron (NM_018303, intron 23 of 27)	intron (NM_018303, intron 23 of 27)	108338	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
151861	chr22	18587071	18587530	+	0	NA	Intergenic	AluJo|SINE|Alu	24619	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
164124	chr3	56704351	56705200	+	0	NA	Intergenic	Intergenic	-21510	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
32055	chr10	101062431	101063180	+	0	NA	exon (NM_030929, exon 2 of 5)	exon (NM_030929, exon 2 of 5)	816	NM_030929	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
88459	chr16	85009871	85010030	+	0	NA	intron (NM_017740, intron 1 of 7)	AluY|SINE|Alu	1585	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
75859	chr15	69665551	69665850	+	0	NA	intron (NR_126437, intron 3 of 5)	intron (NR_126437, intron 3 of 5)	73500	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
71851	chr15	22250601	22250800	+	0	NA	Intergenic	MIRb|SINE|MIR	-7914	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
198245	chr6	99396671	99396850	+	0	NA	Intergenic	AluSc|SINE|Alu	-2565	NM_017421	51805		NM_017421	ENSG00000132423	COQ3	DHHBMT|DHHBMTASE|UG0215E05|bA9819.1	coenzyme Q3, methyltransferase	protein-coding
237168	chrX	107672651	107673400	+	0	NA	Intergenic	Intergenic	43483	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
183421	chr5	78295501	78296030	+	0	NA	Intergenic	Intergenic	-1067	NM_001271769	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
93911	chr17	21279771	21280730	+	0	NA	Intergenic	Intergenic	-4461	NM_145109	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
12113	chr1	100043551	100043800	+	0	NA	intron (NM_033055, intron 1 of 11)	L1PB2|LINE|L1	5580	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
187200	chr5	140667001	140667430	+	0	NA	intron (NM_017706, intron 1 of 6)	intron (NM_017706, intron 1 of 6)	2416	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
105333	chr17	82599621	82600480	+	0	NA	intron (NM_004514, intron 8 of 8)	intron (NM_004514, intron 8 of 8)	48394	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
141860	chr20	641651	642630	+	0	NA	Intergenic	Intergenic	11060	NM_080725	140809		NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
8375	chr1	40371971	40372580	+	0	NA	Intergenic	(GTT)n|Simple_repeat|Simple_repeat	-1452	NM_022733	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
33539	chr10	119272851	119273150	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	65429	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
116369	chr19	17928421	17928750	+	0	NA	Intergenic	AluSc|SINE|Alu	-4430	NM_001136203	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
16823	chr1	155616321	155616780	+	0	NA	Intergenic	AluJr|SINE|Alu	6332	NM_018116	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
151955	chr22	19126821	19127080	+	0	NA	Intergenic	Intergenic	-4358	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
119384	chr19	40221771	40222580	+	0	NA	TTS (NM_024877)	TTS (NM_024877)	-3776	NM_152479	148014		NM_152479	ENSG00000174521	TTC9B	-	tetratricopeptide repeat domain 9B	protein-coding
235210	chrX	41357701	41358280	+	0	NA	non-coding (NR_126093, exon 18 of 19)	non-coding (NR_126093, exon 18 of 19)	23824	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
16992	chr1	155983471	155984100	+	0	NA	Intergenic	Intergenic	-4225	NM_001350112	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
172450	chr4	1981101	1981650	+	0	NA	3' UTR (NM_133331, exon 23 of 23)	3' UTR (NM_133331, exon 23 of 23)	5102	NR_030641	100126332		NR_030641	ENSG00000284587	MIR943	MIRN943|hsa-mir-943	microRNA 943	ncRNA
41125	chr11	65565831	65566950	+	0	NA	Intergenic	Intergenic	4023	NR_038923	254100		NR_038923		ZNRD2-DT	SSSCA1-AS1|ZNRD2-AS1	ZNRD2 divergent transcript	ncRNA
169828	chr3	177143971	177145550	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluY|SINE|Alu	51718	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
175998	chr4	81913321	81913630	+	0	NA	Intergenic	LTR50|LTR|ERVL	-441568	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
17589	chr1	156859351	156860400	+	0	NA	promoter-TSS (NM_014215)	promoter-TSS (NM_014215)	-758	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
120847	chr19	45517901	45518100	+	0	NA	exon (NM_003370, exon 3 of 13)	exon (NM_003370, exon 3 of 13)	10521	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
67963	chr14	74860721	74861350	+	0	NA	intron (NM_001384314, intron 4 of 6)	intron (NM_001384314, intron 4 of 6)	15110	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
122529	chr19	49628471	49628630	+	0	NA	Intergenic	AluY|SINE|Alu	11593	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
181163	chr5	39048271	39048430	+	0	NA	intron (NM_001285439, intron 2 of 38)	MER68|LTR|ERVL	26049	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
64338	chr14	23990751	23990850	+	0	NA	intron (NM_001282988, intron 2 of 7)	MIRb|SINE|MIR	1869	NM_001282988	10901		NM_021004	ENSG00000157326	DHRS4	CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2	dehydrogenase/reductase 4	protein-coding
158408	chr22	50527621	50528130	+	0	NA	intron (NM_001257989, intron 4 of 9)	AluJb|SINE|Alu	-1436	NM_001169109	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
163291	chr3	50330051	50330830	+	0	NA	3' UTR (NM_001206957, exon 5 of 5)	3' UTR (NM_001206957, exon 5 of 5)	-2202	NM_007275	11334		NM_007275	ENSG00000114383	TUSC2	C3orf11|FUS1|PAP|PDAP2	tumor suppressor 2, mitochondrial calcium regulator	protein-coding
151605	chr22	11814651	11814950	+	0	NA	Intergenic	ACRO1|Satellite|acro	-82606	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
154085	chr22	30921771	30922750	+	0	NA	promoter-TSS (NR_146603)	promoter-TSS (NR_146603)	-48	NR_026920	150291		NM_153044	ENSG00000235989	MORC2-AS1	C22orf27|NCRNA00325	MORC2 antisense RNA 1	ncRNA
63074	chr13	113166271	113166680	+	0	NA	intron (NM_001256134, intron 7 of 8)	intron (NM_001256134, intron 7 of 8)	7821	NM_001256134	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
124349	chr19	58328721	58329250	+	0	NA	intron (NM_001321117, intron 1 of 2)	L2c|LINE|L2	-1737	NR_144444	105372480		NR_144444		LOC105372480	-	uncharacterized LOC105372480	ncRNA
102068	chr17	74922971	74923830	+	0	NA	promoter-TSS (NM_178160)	promoter-TSS (NM_178160)	-145	NM_001282489	124590		NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	USH1 protein network component sans	protein-coding
152814	chr22	21859501	21860300	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	7745	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
112894	chr19	7631851	7632700	+	0	NA	TTS (NR_033242)	TTS (NR_033242)	717	NM_001271830	126006		NM_174895	ENSG00000174788	PCP2	GPSM4|PCD5	Purkinje cell protein 2	protein-coding
155483	chr22	38500451	38501080	+	0	NA	intron (NM_006386, intron 2 of 12)	AluSq2|SINE|Alu	5546	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
187081	chr5	140178671	140179630	+	0	NA	intron (NM_032412, intron 1 of 2)	AluJr|SINE|Alu	3962	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
56564	chr12	117077001	117077200	+	0	NA	intron (NR_031766, intron 1 of 7)	intron (NR_031766, intron 1 of 7)	22316	NR_031766	54997		NM_017899	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
134672	chr2	144471201	144471800	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-48114	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
97154	chr17	42570501	42570700	+	0	NA	intron (NM_170607, intron 7 of 7)	intron (NM_170607, intron 7 of 7)	3500	NM_198204	6945		NM_013383	ENSG00000108788	MLX	MAD7|MXD7|TCFL4|TF4|bHLHd13	MAX dimerization protein MLX	protein-coding
194746	chr6	33886801	33887350	+	0	NA	Intergenic	Intergenic	9832	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
19101	chr1	171488221	171488900	+	0	NA	intron (NM_015172, intron 1 of 33)	FLAM_A|SINE|Alu	3030	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
40622	chr11	64692971	64693880	+	0	NA	intron (NM_015080, intron 3 of 22)	L2|LINE|L2	29772	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
135234	chr2	159457471	159457880	+	0	NA	intron (NM_001289975, intron 3 of 35)	intron (NM_001289975, intron 3 of 35)	-157619	NR_110588	643072		NR_110587	ENSG00000224152	BAZ2B-AS1	lnc-BAZ2B	BAZ2B antisense RNA 1	ncRNA
120525	chr19	44882851	44882970	+	0	NA	intron (NM_001042724, intron 6 of 8)	AluY|SINE|Alu	-8310	NM_001128916	10452		NM_006114	ENSG00000130204	TOMM40	C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40	translocase of outer mitochondrial membrane 40	protein-coding
175966	chr4	81466621	81466880	+	0	NA	intron (NM_001300736, intron 1 of 12)	AluSc8|SINE|Alu	5157	NM_152545	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
137946	chr2	201127481	201128230	+	0	NA	intron (NR_147255, intron 1 of 4)	intron (NR_147255, intron 1 of 4)	-1110	NM_001308042	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
14164	chr1	121364021	121364430	+	0	NA	intron (NR_104189, intron 2 of 3)	intron (NR_104189, intron 2 of 3)	33680	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
236700	chrX	77784721	77784980	+	0	NA	intron (NM_138270, intron 1 of 33)	intron (NM_138270, intron 1 of 33)	1366	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
205932	chr7	25895251	25895780	+	0	NA	Intergenic	Intergenic	54471	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
239503	chrY	56763021	56763640	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-190925	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
102096	chr17	74981551	74983200	+	0	NA	Intergenic	CpG	-5257	NM_014603	30850		NM_014603	ENSG00000109089	CDR2L	HUMPPA	cerebellar degeneration related protein 2 like	protein-coding
210411	chr7	100020971	100021750	+	0	NA	intron (NM_001346581, intron 2 of 6)	AluSx1|SINE|Alu	5764	NR_144477	7586		NM_003439	ENSG00000106261	ZKSCAN1	KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
148706	chr21	6469501	6469780	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1019	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
61707	chr13	74090671	74091830	+	0	NA	intron (NM_007249, intron 1 of 7)	L1M4|LINE|L1	42679	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
96505	chr17	40315721	40316400	+	0	NA	intron (NM_000964, intron 1 of 8)	intron (NM_000964, intron 1 of 8)	-2185	NM_001145301	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
113727	chr19	10466271	10466430	+	0	NA	intron (NM_001111307, intron 14 of 14)	AluY|SINE|Alu	13418	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
125445	chr2	12048751	12049050	+	0	NA	intron (NR_110196, intron 2 of 5)	LTR16|LTR|ERVL	41784	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
196444	chr6	43496651	43496950	+	0	NA	intron (NM_001350565, intron 2 of 10)	intron (NM_001350565, intron 2 of 10)	7042	NM_001350567	93643		NM_080604	ENSG00000137221	TJAP1	PILT|TJP4	tight junction associated protein 1	protein-coding
124043	chr19	55518821	55519080	+	0	NA	exon (NM_001144950, exon 14 of 14)	exon (NM_001144950, exon 14 of 14)	18183	NM_001370096	646643		NM_001101401	ENSG00000187550	SBK2	SGK069	SH3 domain binding kinase family member 2	protein-coding
18635	chr1	166843771	166844130	+	0	NA	intron (NM_001314014, intron 2 of 3)	intron (NM_001314014, intron 2 of 3)	4475	NM_001314014	57645		NM_017542	ENSG00000143157	POGK	BASS2|KRBOX2|LST003	pogo transposable element derived with KRAB domain	protein-coding
159097	chr3	12541751	12541850	+	0	NA	intron (NM_001378007, intron 3 of 3)	intron (NM_001378007, intron 3 of 3)	3699	NM_001378009	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
119017	chr19	38907001	38907400	+	0	NA	intron (NR_161470, intron 3 of 4)	intron (NR_161470, intron 3 of 4)	4958	NM_001243212	643669		NM_001243212	ENSG00000262484	CCER2	-	coiled-coil glutamate rich protein 2	protein-coding
27863	chr10	41133851	41133950	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1234145	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
19808	chr1	182611171	182611330	+	0	NA	Intergenic	MIRb|SINE|MIR	-3890	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
210597	chr7	100400751	100400850	+	0	NA	TTS (NM_013439)	TTS (NM_013439)	27313	NM_013439	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
164999	chr3	71359171	71359630	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-54629	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
35192	chr11	797001	797700	+	0	NA	intron (NM_001191061, intron 1 of 9)	intron (NM_001191061, intron 1 of 9)	645	NM_001191060	79751		NM_024698	ENSG00000177542	SLC25A22	DEE3|EIEE3|GC-1|GC1|NET44	solute carrier family 25 member 22	protein-coding
78879	chr15	100597951	100598650	+	0	NA	intron (NR_148017, intron 1 of 6)	intron (NR_148017, intron 1 of 6)	3884	NR_148018	55180		NM_018148	ENSG00000140471	LINS1	LINS|MRT27|WINS1	lines homolog 1	protein-coding
224324	chr9	6715451	6716680	+	0	NA	Intergenic	CpG	-4798	NM_001146696	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
111538	chr19	4028701	4029980	+	0	NA	intron (NM_015897, intron 7 of 10)	intron (NM_015897, intron 7 of 10)	21604	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
36300	chr11	3834301	3834880	+	0	NA	intron (NM_001665, intron 1 of 1)	intron (NM_001665, intron 1 of 1)	6369	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
53050	chr12	57624471	57624830	+	0	NA	3' UTR (NM_001276468, exon 10 of 10)	3' UTR (NM_001276468, exon 10 of 10)	-2747	NR_120450	101927583		NR_120450		LOC101927583	-	uncharacterized LOC101927583	ncRNA
135380	chr2	160480901	160481250	+	0	NA	intron (NM_016836, intron 1 of 13)	AluSx1|SINE|Alu	12732	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
219214	chr8	66675201	66675400	+	0	NA	intron (NR_161217, intron 1 of 1)	AluJr4|SINE|Alu	7704	NM_001204173	100533105		NM_001204173	ENSG00000288602	C8orf44-SGK3	-	C8orf44-SGK3 readthrough	protein-coding
209490	chr7	76628551	76628850	+	0	NA	TTS (NR_029411)	TTS (NR_029411)	-1397	NM_152992	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
20765	chr1	201006121	201006830	+	0	NA	intron (NM_017596, intron 3 of 33)	intron (NM_017596, intron 3 of 33)	17239	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
71396	chr14	105522771	105523030	+	0	NA	Intergenic	AluY|SINE|Alu	-3683	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
2973	chr1	11955271	11955430	+	0	NA	intron (NM_001316320, intron 7 of 19)	intron (NM_001316320, intron 7 of 19)	20633	NM_001316320	5351		NM_000302	ENSG00000083444	PLOD1	EDS6|EDSKCL1|LH|LH1|LLH|PLOD	procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	protein-coding
70830	chr14	103632271	103632930	+	0	NA	intron (NM_001130107, intron 1 of 15)	AluSq2|SINE|Alu	3412	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
116063	chr19	17227921	17228630	+	0	NA	exon (NM_024578, exon 5 of 6)	exon (NM_024578, exon 5 of 6)	2049	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
209761	chr7	87213551	87214950	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	5482	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
13945	chr1	120342001	120342450	+	0	NA	Intergenic	CpG	-72802	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
137690	chr2	197484951	197485950	+	0	NA	Intergenic	AluSx1|SINE|Alu	1453	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
52798	chr12	56723551	56724100	+	0	NA	intron (NM_001365896, intron 2 of 8)	intron (NM_001365896, intron 2 of 8)	1474	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
74511	chr15	60389071	60390150	+	0	NA	intron (NM_004039, intron 1 of 12)	intron (NM_004039, intron 1 of 12)	8376	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
55656	chr12	107330201	107330400	+	0	NA	intron (NM_001347944, intron 1 of 14)	L2c|LINE|L2	9712	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
237196	chrX	107825771	107827450	+	0	NA	intron (NM_012216, intron 1 of 9)	CpG	744	NM_052817	11043		NM_012216	ENSG00000080561	MID2	FXY2|MRX101|RNF60|TRIM1|XLID101	midline 2	protein-coding
26133	chr10	13785451	13786030	+	0	NA	intron (NM_018027, intron 5 of 24)	L1PA5|LINE|L1	-78173	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
15424	chr1	150264801	150265000	+	0	NA	TTS (NR_045033)	TTS (NR_045033)	3206	NR_145745	109616989		NR_145745		SNORD13C	-	small nucleolar RNA, C/D box 13C	snoRNA
84446	chr16	30416151	30416450	+	0	NA	intron (NM_016643, intron 2 of 2)	L2a|LINE|L2	3459	NR_145731	109616959		NR_145731	ENSG00000199787	SNORA80C	-	small nucleolar RNA, H/ACA box 80C	snoRNA
235037	chrX	40084571	40085100	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	13123	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
223795	chr8	144757121	144757580	+	0	NA	Intergenic	Intergenic	-1819	NM_138367	90987		NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
81471	chr16	8905151	8906050	+	0	NA	intron (NR_135826, intron 13 of 30)	intron (NR_135826, intron 13 of 30)	31039	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
105039	chr17	82060071	82060230	+	0	NA	intron (NM_022156, intron 10 of 13)	intron (NM_022156, intron 10 of 13)	5654	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
85479	chr16	50696021	50697060	+	0	NA	promoter-TSS (NM_022162)	promoter-TSS (NM_022162)	-408	NM_022162	64127		NM_022162	ENSG00000167207	NOD2	ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS	nucleotide binding oligomerization domain containing 2	protein-coding
207808	chr7	50302301	50302830	+	0	NA	Intergenic	MIRb|SINE|MIR	-1499	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
222544	chr8	140594751	140595280	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	40618	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
7989	chr1	37945871	37946330	+	0	NA	intron (NM_001365824, intron 2 of 24)	MIRb|SINE|MIR	769	NM_001365820	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
20790	chr1	201111621	201111880	+	0	NA	intron (NM_000069, intron 1 of 43)	intron (NM_000069, intron 1 of 43)	676	NM_000069	779		NM_000069	ENSG00000081248	CACNA1S	CACNL1A3|CCHL1A3|CMYP18|Cav1.1|DHPRM|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP	calcium voltage-gated channel subunit alpha1 S	protein-coding
221775	chr8	127921701	127921930	+	0	NA	intron (NR_003367, intron 2 of 8)	AluSz6|SINE|Alu	26908	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
45598	chr11	118897401	118897650	+	0	NA	non-coding (NR_165445, exon 7 of 7)	non-coding (NR_165445, exon 7 of 7)	4133	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
3736	chr1	16633001	16633580	+	0	NA	Intergenic	Intergenic	-2384	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
66980	chr14	66507251	66508650	+	0	NA	promoter-TSS (NM_001377517)	promoter-TSS (NM_001377517)	-197	NM_001377517	10243		NM_020806	ENSG00000171723	GPHN	GEPH|GPH|GPHRYN|HKPX1|MOCODC	gephyrin	protein-coding
175612	chr4	75942101	75942600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1337	NM_001042402	27163		NM_014435	ENSG00000138744	NAAA	ASAHL|PLT	N-acylethanolamine acid amidase	protein-coding
115285	chr19	14563921	14565180	+	0	NA	intron (NM_138501, intron 7 of 12)	(CCCGC)n|Simple_repeat|Simple_repeat	7516	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
158064	chr22	49954921	49955530	+	0	NA	Intergenic	Intergenic	-5547	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
124376	chr19	58380051	58381750	+	0	NA	intron (NM_138466, intron 1 of 2)	CpG	130	NR_049780	116412		NM_138466	ENSG00000152475	ZNF837	-	zinc finger protein 837	protein-coding
108818	chr18	78730501	78730780	+	0	NA	Intergenic	Intergenic	-249635	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
5054	chr1	24565201	24565600	+	0	NA	intron (NM_001010980, intron 1 of 3)	MER113|DNA|hAT-Charlie	9313	NM_001010980	400746		NM_001010980	ENSG00000184454	NCMAP	C1orf130|MP11	non-compact myelin associated protein	protein-coding
189924	chr5	177379301	177379500	+	0	NA	Intergenic	Intergenic	-5034	NM_001167579	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
10405	chr1	65216471	65216630	+	0	NA	intron (NM_203464, intron 3 of 5)	intron (NM_203464, intron 3 of 5)	-48144	NM_001256865	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
10891	chr1	78651151	78651850	+	0	NA	intron (NR_135641, intron 2 of 7)	MER1A|DNA|hAT-Charlie	1669	NM_006417	10561		NM_006417	ENSG00000137965	IFI44	MTAP44|TLDC5|p44	interferon induced protein 44	protein-coding
102404	chr17	75594121	75594850	+	0	NA	exon (NM_001309242, exon 9 of 63)	exon (NM_001309242, exon 9 of 63)	6427	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
118452	chr19	35867221	35867480	+	0	NA	TTS (NM_199180)	TTS (NM_199180)	-1095	NM_005166	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
84628	chr16	30707371	30707530	+	0	NA	intron (NM_006662, intron 5 of 33)	intron (NM_006662, intron 5 of 33)	-3087	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
152200	chr22	20116621	20118380	+	0	NA	promoter-TSS (NM_001278641)	promoter-TSS (NM_001278641)	-5	NM_001278640	5902		NM_002882	ENSG00000099901	RANBP1	HTF9A	RAN binding protein 1	protein-coding
188234	chr5	151019001	151019200	+	0	NA	Intergenic	Intergenic	-1491	NM_001329790	2878		NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
227744	chr9	93084551	93084650	+	0	NA	exon (NM_001287008, exon 4 of 4)	exon (NM_001287008, exon 4 of 4)	-11617	NM_032310	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
142201	chr20	3038751	3039230	+	0	NA	TTS (NM_002836)	TTS (NM_002836)	-4632	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
65842	chr14	54907971	54908780	+	0	NA	Intergenic	L1M4|LINE|L1	-5549	NM_001024071	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
160991	chr3	37248351	37248650	+	0	NA	intron (NM_001172713, intron 1 of 22)	intron (NM_001172713, intron 1 of 22)	-4305	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
234090	chrX	9318121	9318550	+	0	NA	Intergenic	Intergenic	-144960	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
162647	chr3	48841171	48841330	+	0	NA	intron (NM_004157, intron 1 of 10)	L1MB4|LINE|L1	6624	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
226154	chr9	63812771	63814200	+	0	NA	non-coding (NR_146625, exon 1 of 2)	non-coding (NR_146625, exon 1 of 2)	544	NR_146626	203274		NR_146625		LINC00537	-	long intergenic non-protein coding RNA 537	ncRNA
89225	chr16	88628401	88629100	+	0	NA	intron (NM_144604, intron 15 of 17)	intron (NM_144604, intron 15 of 17)	-9822	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
216101	chr8	11092471	11092650	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	-25471	NR_134308	101929269		NR_134308	ENSG00000254839	LOC101929269	-	uncharacterized LOC101929269	ncRNA
178258	chr4	143554801	143555300	+	0	NA	3' UTR (NM_003601, exon 24 of 24)	3' UTR (NM_003601, exon 24 of 24)	-4422	NR_003675	441046		NM_001011539	ENSG00000251600	GUSBP5	GYPELOC441046	GUSB pseudogene 5	pseudo
69613	chr14	97599401	97599650	+	0	NA	Intergenic	L1ME3E|LINE|L1	87133	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
91297	chr17	4189351	4189800	+	0	NA	intron (NM_001330063, intron 10 of 24)	intron (NM_001330063, intron 10 of 24)	45878	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
235804	chrX	49188701	49189200	+	0	NA	3' UTR (NM_003179, exon 7 of 7)	3' UTR (NM_003179, exon 7 of 7)	-2577	NM_006150	4007		NM_006150	ENSG00000012211	PRICKLE3	LMO6|LOAM|LOAS|Pk3	prickle planar cell polarity protein 3	protein-coding
10198	chr1	61783671	61783850	+	0	NA	intron (NM_176877, intron 7 of 42)	AluSx1|SINE|Alu	41280	NM_176877	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
3504	chr1	16043971	16044480	+	0	NA	intron (NM_000085, intron 1 of 19)	intron (NM_000085, intron 1 of 19)	443	NM_000085	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
87358	chr16	70379671	70382230	+	0	NA	3' UTR (NM_006927, exon 7 of 7)	3' UTR (NM_006927, exon 7 of 7)	34047	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
101888	chr17	74352951	74353580	+	0	NA	exon (NM_153209, exon 16 of 20)	exon (NM_153209, exon 16 of 20)	8603	NM_001080466	388419		NM_001080466	ENSG00000204347	BTBD17	BTBD17A|LGALS3BPL|TANGO10A	BTB domain containing 17	protein-coding
152081	chr22	19756451	19758800	+	0	NA	intron (NM_080646, intron 1 of 8)	intron (NM_080646, intron 1 of 8)	922	NM_080647	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
200486	chr6	135323071	135323480	+	0	NA	exon (NM_001350504, exon 25 of 28)	exon (NM_001350504, exon 25 of 28)	84115	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
83006	chr16	22198121	22198380	+	0	NA	Intergenic	AluJr|SINE|Alu	-8028	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
217466	chr8	28778251	28778800	+	0	NA	intron (NR_026826, intron 10 of 14)	intron (NR_026826, intron 10 of 14)	77024	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
73579	chr15	44501601	44502110	+	0	NA	intron (NM_016396, intron 8 of 12)	intron (NM_016396, intron 8 of 12)	35045	NR_034171	645212		NR_034170	ENSG00000179523	EIF3J-DT	EIF3J-AS1	EIF3J divergent transcript	ncRNA
18412	chr1	161443201	161443830	+	0	NA	Intergenic	CpG	-61942	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
214419	chr7	149832821	149833080	+	0	NA	intron (NR_163594, intron 102 of 102)	intron (NR_163594, intron 102 of 102)	-5425	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
205505	chr7	18086301	18087050	+	0	NA	promoter-TSS (NM_001321873)	promoter-TSS (NM_001321873)	-150	NM_001321869	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
107238	chr18	37317921	37318000	+	0	NA	intron (NR_148523, intron 3 of 13)	intron (NR_148523, intron 3 of 13)	43500	NR_134588	105372068		NR_134588	ENSG00000267202	LOC105372068	-	uncharacterized LOC105372068	ncRNA
196050	chr6	42099801	42100200	+	0	NA	Intergenic	Intergenic	42620	NM_001164446	647024		NM_001164446	ENSG00000188112	C6orf132	LncCCLM|bA7K24.2	chromosome 6 open reading frame 132	protein-coding
9759	chr1	53334751	53335050	+	0	NA	intron (NR_131923, intron 2 of 2)	AluJb|SINE|Alu	6667	NR_131923	105378732		NR_131923	ENSG00000225675	LRP8-DT	LINC01771	LRP8 divergent transcript	ncRNA
172922	chr4	3504801	3505630	+	0	NA	non-coding (NR_110005, exon 8 of 8)	non-coding (NR_110005, exon 8 of 8)	20671	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
187814	chr5	146609951	146610050	+	0	NA	intron (NR_073526, intron 6 of 8)	L1HS|LINE|L1	-93810	NM_194251	134391		NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|GPCR-2037|PGR7	G protein-coupled receptor 151	protein-coding
188380	chr5	152097271	152097430	+	0	NA	intron (NR_109876, intron 1 of 2)	intron (NR_109876, intron 1 of 2)	138452	NR_109876	101927115		NR_109876	ENSG00000254226	LINC01933	CTB-12O2.1	long intergenic non-protein coding RNA 1933	ncRNA
167692	chr3	130539051	130539150	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-21234	NM_001102608	131873		NM_001102608	ENSG00000206384	COL6A6	-	collagen type VI alpha 6 chain	protein-coding
78661	chr15	94325111	94325750	+	0	NA	intron (NM_001385002, intron 5 of 23)	intron (NM_001385002, intron 5 of 23)	-30500	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
129556	chr2	69836321	69836600	+	0	NA	intron (NM_178439, intron 1 of 13)	MIR|SINE|MIR	6800	NM_178439	64395		NM_178439	ENSG00000087338	GMCL1	BTBD13|GCL|GCL1|SPATA29	germ cell-less 1, spermatogenesis associated	protein-coding
231925	chr9	133110121	133110680	+	0	NA	exon (NM_001042368, exon 3 of 18)	exon (NM_001042368, exon 3 of 18)	10840	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
197326	chr6	73309321	73310470	+	0	NA	5' UTR (NM_001251874, exon 1 of 5)	5' UTR (NM_001251874, exon 1 of 5)	264	NM_001251874	80759		NM_030568	ENSG00000135314	KHDC1	C6orf147|C6orf148|Em:AC019205.8|NDG1|bA257K9.4	KH domain containing 1	protein-coding
165382	chr3	94037001	94037200	+	0	NA	intron (NM_144996, intron 3 of 7)	MER20|DNA|hAT-Charlie	-8503	NM_001001850	415117		NM_001001850	ENSG00000178750	STX19	-	syntaxin 19	protein-coding
181310	chr5	40307901	40308230	+	0	NA	Intergenic	Intergenic	255774	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
210742	chr7	100641351	100641850	+	0	NA	promoter-TSS (NM_003227)	promoter-TSS (NM_003227)	-48	NM_003227	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
85600	chr16	53534621	53535430	+	0	NA	Intergenic	Intergenic	-31721	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
7010	chr1	31904371	31905280	+	0	NA	Intergenic	FAM|SINE|Alu	32993	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
227643	chr9	92953901	92955780	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	7317	NM_001083536	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
142080	chr20	2461021	2461280	+	0	NA	TTS (NM_198216)	TTS (NM_198216)	1897	NR_003684	100113378		NR_003684		SNORD119	-	small nucleolar RNA, C/D box 119	snoRNA
120341	chr19	43564721	43565130	+	0	NA	intron (NM_006297, intron 2 of 16)	MLT1D|LTR|ERVL-MaLR	10602	NM_006297	7515		NM_006297	ENSG00000073050	XRCC1	RCC|SCAR26	X-ray repair cross complementing 1	protein-coding
127729	chr2	43542321	43542830	+	0	NA	intron (NR_144316, intron 20 of 36)	intron (NR_144316, intron 20 of 36)	53399	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
94979	chr17	32267771	32268680	+	0	NA	intron (NM_001363836, intron 2 of 8)	intron (NM_001363836, intron 2 of 8)	2049	NM_001363835	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
186435	chr5	136031121	136031450	+	0	NA	intron (NM_000358, intron 1 of 16)	intron (NM_000358, intron 1 of 16)	2297	NM_000358	7045		NM_000358	ENSG00000120708	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor beta induced	protein-coding
217498	chr8	29055821	29056330	+	0	NA	Intergenic	Intergenic	164761	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
223822	chr8	144869501	144870130	+	0	NA	Intergenic	LTR13|LTR|ERVK	-16259	NM_001081003	28991		NM_014066	ENSG00000170619	COMMD5	HCARG|HT002	COMM domain containing 5	protein-coding
62601	chr13	100392701	100392960	+	0	NA	intron (NM_001352611, intron 18 of 21)	intron (NM_001352611, intron 18 of 21)	88185	NR_047686	100885777		NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
95946	chr17	38975721	38976580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8747	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
71026	chr14	104772721	104773380	+	0	NA	exon (NM_005163, exon 11 of 14)	exon (NM_005163, exon 11 of 14)	19903	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
161271	chr3	39275601	39275800	+	0	NA	intron (NM_001171174, intron 1 of 1)	MER67C|LTR|ERV1	4336	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
215315	chr7	157344201	157345130	+	0	NA	intron (NM_001363676, intron 1 of 6)	AluJb|SINE|Alu	7661	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
34209	chr10	129233451	129233750	+	0	NA	Intergenic	Intergenic	-233641	NM_002412	4255		NM_002412	ENSG00000170430	MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
70728	chr14	103351771	103352300	+	0	NA	Intergenic	AluSq|SINE|Alu	14186	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
11504	chr1	90850871	90851880	+	0	NA	promoter-TSS (NR_146610)	promoter-TSS (NR_146610)	263	NR_135038	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
57815	chr12	123148421	123148880	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	2440	NM_020845	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
30870	chr10	86752821	86754080	+	0	NA	Intergenic	Intergenic	-3169	NM_004329	657		NM_004329	ENSG00000107779	BMPR1A	10q23del|ACVRLK3|ALK-3|ALK3|BMPR-1A|CD292|SKR5	bone morphogenetic protein receptor type 1A	protein-coding
219800	chr8	81253821	81254130	+	0	NA	Intergenic	Intergenic	-26561	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
89672	chr16	89372251	89372550	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	51948	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
172044	chr4	1007421	1007980	+	0	NA	Intergenic	Intergenic	-3926	NM_001004356	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
49710	chr12	31121671	31121830	+	0	NA	intron (NR_153414, intron 37 of 44)	SATR1|Satellite|Satellite	47890	NM_001257145	1663		NM_004399	ENSG00000013573	DDX11	CHL1|CHLR1|KRG2|WABS	DEAD/H-box helicase 11	protein-coding
237072	chrX	103675321	103675580	+	0	NA	TTS (NM_012286)	TTS (NM_012286)	11249	NM_012286	9643		NM_012286	ENSG00000123562	MORF4L2	MORFL2|MRGX	mortality factor 4 like 2	protein-coding
47853	chr12	6623321	6623580	+	0	NA	intron (NM_020400, intron 1 of 1)	AluSz6|SINE|Alu	8199	NM_001142961	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
38839	chr11	47321201	47321600	+	0	NA	intron (NR_164842, intron 29 of 33)	intron (NR_164842, intron 29 of 33)	31302	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
225182	chr9	33939671	33939880	+	0	NA	intron (NR_163243, intron 12 of 24)	GA-rich|Low_complexity|Low_complexity	-5400	NR_102370	101340252		NR_102370	ENSG00000238300	SNORD121B	-	small nucleolar RNA, C/D box 121B	snoRNA
164670	chr3	67001251	67001550	+	0	NA	intron (NM_032505, intron 2 of 3)	intron (NM_032505, intron 2 of 3)	3093	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
151367	chr21	45849771	45849930	+	0	NA	intron (NM_020528, intron 1 of 14)	intron (NM_020528, intron 1 of 14)	1700	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
25942	chr10	11400751	11400850	+	0	NA	Intergenic	Intergenic	-56126	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
189199	chr5	171428151	171428600	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	8728	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
48084	chr12	7162521	7163380	+	0	NA	Intergenic	Intergenic	-25703	NM_001351124	5830		NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
90079	chr16	90016071	90016230	+	0	NA	intron (NM_001288708, intron 1 of 4)	intron (NM_001288708, intron 1 of 4)	3306	NM_001042610	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
40755	chr11	64840821	64841830	+	0	NA	intron (NM_017525, intron 3 of 36)	AluSx1|SINE|Alu	3328	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
139335	chr2	219562321	219562580	+	0	NA	exon (NM_001173408, exon 8 of 9)	exon (NM_001173408, exon 8 of 9)	9089	NM_001173408	23363		NM_015311	ENSG00000124006	OBSL1	-	obscurin like cytoskeletal adaptor 1	protein-coding
137979	chr2	201211051	201211350	+	0	NA	intron (NM_001206542, intron 7 of 7)	FLAM_A|SINE|Alu	-22243	NM_001228	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
189042	chr5	169656151	169656530	+	0	NA	intron (NR_156756, intron 2 of 52)	AluSz6|SINE|Alu	19065	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
98030	chr17	45409821	45410880	+	0	NA	promoter-TSS (NM_001385385)	promoter-TSS (NM_001385385)	36	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
207977	chr7	55364921	55366830	+	0	NA	5' UTR (NM_018697, exon 1 of 9)	5' UTR (NM_018697, exon 1 of 9)	538	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
205164	chr7	7257651	7259730	+	0	NA	intron (NR_108073, intron 1 of 3)	intron (NR_108073, intron 1 of 3)	3536	NR_108073	101927354		NR_108073	ENSG00000230825	LINC03016	-	long intergenic non-protein coding RNA 3016	ncRNA
166354	chr3	112984101	112984950	+	0	NA	Intergenic	Intergenic	-6428	NM_138485	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
10356	chr1	64934471	64934830	+	0	NA	intron (NM_001321852, intron 1 of 24)	L2c|LINE|L2	31899	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
8327	chr1	40167251	40167750	+	0	NA	intron (NM_012421, intron 1 of 7)	intron (NM_012421, intron 1 of 7)	6113	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
26880	chr10	25875501	25875730	+	0	NA	Intergenic	Intergenic	58095	NR_120650	101929073		NR_120650	ENSG00000226304	LOC101929073	-	uncharacterized LOC101929073	ncRNA
87196	chr16	69413621	69413950	+	0	NA	Intergenic	Intergenic	-10834	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
102172	chr17	75139771	75140130	+	0	NA	intron (NM_001002032, intron 3 of 3)	AluSc|SINE|Alu	-8155	NM_001252377	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
128171	chr2	50491571	50491750	+	0	NA	intron (NM_001135659, intron 16 of 23)	intron (NM_001135659, intron 16 of 23)	-143904	NM_138735	9378		NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
50713	chr12	48943771	48943930	+	0	NA	intron (NM_001659, intron 1 of 4)	LFSINE_Vert|SINE|tRNA	13637	NM_001659	377		NM_001659	ENSG00000134287	ARF3	-	ADP ribosylation factor 3	protein-coding
70183	chr14	100393721	100394380	+	0	NA	intron (NM_024515, intron 2 of 6)	MIRc|SINE|MIR	17565	NM_001350947	79446		NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
194779	chr6	34153821	34154080	+	0	NA	intron (NM_001256809, intron 1 of 8)	intron (NM_001256809, intron 1 of 8)	1672	NM_001256809	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
127268	chr2	38712651	38712750	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	38661	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
179261	chr4	176052751	176052850	+	0	NA	Intergenic	MIRc|SINE|MIR	-13041	NM_001378103	116966		NM_170710	ENSG00000150627	WDR17	-	WD repeat domain 17	protein-coding
188913	chr5	160312371	160312530	+	0	NA	5' UTR (NM_001308173, exon 1 of 6)	5' UTR (NM_001308173, exon 1 of 6)	114	NM_001308173	79616		NM_024565	ENSG00000135083	CCNJL	-	cyclin J like	protein-coding
184053	chr5	91419551	91420000	+	0	NA	non-coding (NR_027435, exon 3 of 3)	non-coding (NR_027435, exon 3 of 3)	-36458	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
12634	chr1	109197551	109197650	+	0	NA	exon (NM_001284352, exon 15 of 21)	exon (NM_001284352, exon 15 of 21)	11051	NM_001284353	57535		NM_020775	ENSG00000116299	ELAPOR1	EIG121|KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein-coding
22747	chr1	224359401	224360000	+	0	NA	intron (NR_102347, intron 1 of 3)	AluSx3|SINE|Alu	2821	NM_014184	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
23123	chr1	226693051	226693750	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-18332	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
218841	chr8	59643571	59643930	+	0	NA	Intergenic	Intergenic	524540	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
226015	chr9	41649771	41650080	+	0	NA	TTS (NR_103714)	TTS (NR_103714)	2251	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
185455	chr5	131266521	131267200	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	2807	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
61531	chr13	60156071	60156430	+	0	NA	intron (NM_001042517, intron 1 of 27)	MLT1D|LTR|ERVL-MaLR	7678	NM_001258367	81624		NM_030932	ENSG00000139734	DIAPH3	AN|AUNA1|DIA2|DRF3|NSDAN|diap3|mDia2	diaphanous related formin 3	protein-coding
65539	chr14	51922421	51923350	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-4314	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
46265	chr11	124759451	124759830	+	0	NA	intron (NR_120577, intron 1 of 1)	CpG	506	NR_120577	101929340		NR_120577	ENSG00000250073	ESAM-AS1	-	ESAM antisense RNA 1	ncRNA
97314	chr17	43243271	43244150	+	0	NA	Intergenic	LTR13|LTR|ERVK	2154	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
153763	chr22	29478551	29479250	+	0	NA	Intergenic	Intergenic	-1318	NM_021076	4744		NM_021076	ENSG00000100285	NEFH	CMT2CC|NFH	neurofilament heavy chain	protein-coding
188282	chr5	151127671	151128380	+	0	NA	intron (NM_001193544, intron 12 of 24)	intron (NM_001193544, intron 12 of 24)	13659	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
143493	chr20	31184851	31184950	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-72764	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
65768	chr14	54435401	54436030	+	0	NA	intron (NM_005776, intron 2 of 4)	intron (NM_005776, intron 2 of 4)	5659	NM_005776	10175		NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family member 1	protein-coding
181983	chr5	55184621	55185250	+	0	NA	Intergenic	Intergenic	-11758	NM_152623	166979		NM_152623	ENSG00000164287	CDC20B	G6VTS76519	cell division cycle 20B	protein-coding
64483	chr14	24306901	24307100	+	0	NA	3' UTR (NM_001286367, exon 10 of 10)	3' UTR (NM_001286367, exon 10 of 10)	-3140	NM_019839	56413		NM_019839	ENSG00000213906	LTB4R2	BLT2|BLTR2|JULF2|KPG_004|LTB4-R 2|LTB4-R2|NOP9	leukotriene B4 receptor 2	protein-coding
165280	chr3	75641121	75641800	+	0	NA	Intergenic	Intergenic	10697	NR_031714	100302212		NR_031714	ENSG00000283894	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
222926	chr8	142990771	142991330	+	0	NA	intron (NR_026913, intron 1 of 1)	intron (NR_026913, intron 1 of 1)	-4778	NR_102426	100128627		NR_102426		CDC42P3	-	CDC42 pseudogene 3	pseudo
46290	chr11	124870101	124870850	+	0	NA	intron (NM_022370, intron 5 of 27)	intron (NM_022370, intron 5 of 27)	5043	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
206420	chr7	32533621	32533880	+	0	NA	intron (NM_015060, intron 1 of 15)	intron (NM_015060, intron 1 of 15)	38261	NM_015060	23080		NM_015060	ENSG00000105778	AVL9	KIAA0241	AVL9 cell migration associated	protein-coding
140915	chr2	237708901	237709100	+	0	NA	intron (NM_001137551, intron 2 of 11)	intron (NM_001137551, intron 2 of 11)	16795	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
181212	chr5	39166301	39168000	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	52413	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
44029	chr11	95091321	95091580	+	0	NA	intron (NM_015036, intron 1 of 1)	intron (NM_015036, intron 1 of 1)	1604	NM_015036	23052		NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
99446	chr17	50134271	50134430	+	0	NA	3' UTR (NM_032595, exon 10 of 10)	3' UTR (NM_032595, exon 10 of 10)	-4190	NM_174920	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
107825	chr18	54210551	54210730	+	0	NA	intron (NM_003927, intron 1 of 6)	intron (NM_003927, intron 1 of 6)	11772	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
213409	chr7	137932851	137933280	+	0	NA	promoter-TSS (NM_001318246)	promoter-TSS (NM_001318246)	-77	NM_001318246	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
153664	chr22	28879971	28880730	+	0	NA	Intergenic	AluSz|SINE|Alu	-3222	NM_001206998	84133		NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
35074	chr11	611971	612630	+	0	NA	TTS (NM_001572)	TTS (NM_001572)	3650	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
66145	chr14	60265201	60265400	+	0	NA	intron (NM_177951, intron 2 of 3)	intron (NM_177951, intron 2 of 3)	16079	NM_021003	5494		NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
159779	chr3	16311621	16312500	+	0	NA	intron (NM_001352982, intron 10 of 10)	intron (NM_001352982, intron 10 of 10)	46848	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
67002	chr14	67391171	67391550	+	0	NA	intron (NM_016445, intron 6 of 8)	intron (NM_016445, intron 6 of 8)	20805	NM_016445	26499		NM_016445	ENSG00000100558	PLEK2	-	pleckstrin 2	protein-coding
137524	chr2	197201251	197201680	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	3474	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
3780	chr1	16697271	16697500	+	0	NA	intron (NR_026567, intron 8 of 10)	intron (NR_026567, intron 8 of 10)	16130	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
156027	chr22	39956371	39956530	+	0	NA	intron (NM_004810, intron 3 of 7)	AluSz|SINE|Alu	9633	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
232776	chr9	136688871	136689030	+	0	NA	Intergenic	Intergenic	-1493	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
104123	chr17	80340471	80340850	+	0	NA	intron (NM_001256071, intron 26 of 67)	AluSx1|SINE|Alu	-74507	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
220508	chr8	100663971	100664530	+	0	NA	Intergenic	Intergenic	-14585	NM_152628	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
152302	chr22	20323921	20324480	+	0	NA	Intergenic	Intergenic	-4140	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
113138	chr19	8327571	8328030	+	0	NA	intron (NM_198471, intron 7 of 10)	intron (NM_198471, intron 7 of 10)	6304	NM_001031	6234		NM_001031	ENSG00000233927	RPS28	DBA15|S28|eS28	ribosomal protein S28	protein-coding
11436	chr1	89781621	89782250	+	0	NA	Intergenic	MER21C|LTR|ERVL	-39097	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
237988	chrX	134483951	134484380	+	0	NA	intron (NM_000194, intron 3 of 8)	intron (NM_000194, intron 3 of 8)	24000	NM_000194	3251		NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
23788	chr1	233791071	233791300	+	0	NA	Intergenic	Intergenic	-113491	NM_173508	148641		NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
225616	chr9	36195901	36196430	+	0	NA	intron (NM_001184762, intron 1 of 2)	AluSx|SINE|Alu	5244	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
195217	chr6	36132851	36132950	+	0	NA	intron (NM_002754, intron 3 of 11)	intron (NM_002754, intron 3 of 11)	2387	NM_002754	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
50574	chr12	48212601	48212980	+	0	NA	Intergenic	Intergenic	-9498	NM_001004134	121275		NM_001004134	ENSG00000172640	OR10AD1	OR10AD1P|OR12-1	olfactory receptor family 10 subfamily AD member 1	protein-coding
166866	chr3	123522851	123523350	+	0	NA	intron (NM_001329784, intron 6 of 8)	intron (NM_001329784, intron 6 of 8)	61517	NM_001329787	201562		NM_198402	ENSG00000206527	HACD2	PTPLB	3-hydroxyacyl-CoA dehydratase 2	protein-coding
165334	chr3	88041071	88041230	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	17846	NM_003663	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
125110	chr2	9757251	9758000	+	0	NA	Intergenic	Intergenic	-85817	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
8641	chr1	41738701	41739830	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	179657	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
29442	chr10	70387371	70388180	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-5125	NM_001278214	55222		NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
165001	chr3	71360471	71361230	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-56079	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
109915	chr19	1292251	1293530	+	0	NA	intron (NM_001405, intron 1 of 3)	intron (NM_001405, intron 1 of 3)	7017	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
170464	chr3	185923951	185924050	+	0	NA	intron (NM_001243879, intron 2 of 7)	intron (NM_001243879, intron 2 of 7)	14014	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
86997	chr16	68234101	68235400	+	0	NA	intron (NM_001365264, intron 2 of 14)	intron (NM_001365264, intron 2 of 14)	-1251	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
40929	chr11	65260221	65260550	+	0	NA	Intergenic	AluJb|SINE|Alu	-1577	NM_002689	23649		NM_002689	ENSG00000014138	POLA2	-	DNA polymerase alpha 2, accessory subunit	protein-coding
38542	chr11	45909071	45909980	+	0	NA	TTS (NM_004813)	TTS (NM_004813)	-2254	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
196707	chr6	44934451	44934930	+	0	NA	intron (NM_001350327, intron 8 of 9)	MLT1A0|LTR|ERVL-MaLR	263080	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
44197	chr11	96272551	96273650	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-68338	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
62177	chr13	97369051	97370050	+	0	NA	intron (NM_001382690, intron 9 of 9)	intron (NM_001382690, intron 9 of 9)	-64619	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
83244	chr16	23877171	23877850	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	41527	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
156249	chr22	40403171	40403330	+	0	NA	intron (NR_146414, intron 4 of 21)	intron (NR_146414, intron 4 of 21)	32656	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
37721	chr11	31326471	31327050	+	0	NA	intron (NM_181807, intron 3 of 8)	intron (NM_181807, intron 3 of 8)	42979	NM_001367979	341019		NM_020869	ENSG00000170959	DCDC1	DCDC5	doublecortin domain containing 1	protein-coding
71318	chr14	105394401	105394600	+	0	NA	intron (NM_001243127, intron 23 of 23)	(CAGG)n|Simple_repeat|Simple_repeat	-4038	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
133391	chr2	118202471	118203230	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-16464	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
128591	chr2	60929801	60930200	+	0	NA	3' UTR (NM_002908, exon 11 of 11)	3' UTR (NM_002908, exon 11 of 11)	48426	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
102592	chr17	75898751	75899630	+	0	NA	exon (NM_032478, exon 8 of 9)	exon (NM_032478, exon 8 of 9)	-2239	NM_173547	201292		NM_173547	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
92938	chr17	16987101	16987500	+	0	NA	Intergenic	L2a|LINE|L2	-1029	NR_146886	105371562		NR_146886	ENSG00000230969	LINC02090	-	long intergenic non-protein coding RNA 2090	ncRNA
166898	chr3	124688771	124689180	+	0	NA	intron (NM_007064, intron 18 of 26)	intron (NM_007064, intron 18 of 26)	-41391	NR_033437	7372		NM_000373	ENSG00000114491	UMPS	OPRT	uridine monophosphate synthetase	protein-coding
98687	chr17	47881551	47881850	+	0	NA	Intergenic	MIR|SINE|MIR	14116	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
6440	chr1	28234851	28235200	+	0	NA	Intergenic	AluSp|SINE|Alu	-1066	NM_178191	93974		NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
71582	chr14	106494171	106494430	+	0	NA	non-coding (NR_027457, exon 3 of 3).2	non-coding (NR_027457, exon 3 of 3).2	11861	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
145629	chr20	44746871	44747030	+	0	NA	promoter-TSS (NR_132377)	promoter-TSS (NR_132377)	-723	NR_132377	106144538		NR_132377		KCNK15-AS1	-	KCNK15 and WISP2 antisense RNA 1	ncRNA
16699	chr1	155212671	155212830	+	0	NA	exon (NM_002455, exon 6 of 8)	exon (NM_002455, exon 6 of 8)	4051	NM_002455	4580		NM_002455	ENSG00000173171	MTX1	MTX|MTXN	metaxin 1	protein-coding
189579	chr5	175517121	175518230	+	0	NA	intron (NM_001322978, intron 8 of 10)	intron (NM_001322978, intron 8 of 10)	39115	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
72186	chr15	29822471	29822850	+	0	NA	promoter-TSS (NM_003257).2	promoter-TSS (NM_003257).2	-192	NM_001355015	7082		NM_003257	ENSG00000104067	TJP1	ZO-1	tight junction protein 1	protein-coding
38054	chr11	35171501	35171780	+	0	NA	intron (NM_001202557, intron 1 of 8)	HSMAR2|DNA|TcMar-Mariner	8690	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
52716	chr12	56595571	56595930	+	0	NA	3' UTR (NM_002898, exon 14 of 14)	3' UTR (NM_002898, exon 14 of 14)	34576	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
77170	chr15	80063321	80064000	+	0	NA	intron (NM_001242914, intron 1 of 6)	AluSx|SINE|Alu	3500	NM_001242914	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
225134	chr9	33629071	33629500	+	0	NA	Intergenic	Intergenic	5060	NR_003573	304		NR_003573		ANXA2P2	ANX2L2|ANX2P2|LPC2B	annexin A2 pseudogene 2	pseudo
92289	chr17	8087251	8087550	+	0	NA	promoter-TSS (NR_036201)	promoter-TSS (NR_036201)	316	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
30785	chr10	84356921	84357980	+	0	NA	intron (NM_001284241, intron 1 of 2)	AluYf1|SINE|Alu	28861	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
69515	chr14	96117221	96117680	+	0	NA	Intergenic	MER50-int|LTR|ERV1	78088	NM_001282463	56967		NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
12353	chr1	101232901	101233130	+	0	NA	Intergenic	Intergenic	3513	NR_104626	101928370		NR_104626		S1PR1-DT	LISPR1	S1PR1 divergent transcript	ncRNA
201879	chr6	150814271	150814430	+	0	NA	intron (NM_001329799, intron 10 of 15)	intron (NM_001329799, intron 10 of 15)	-51329	NR_146719	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
13833	chr1	117632301	117632830	+	0	NA	Intergenic	Intergenic	26517	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
21010	chr1	202861071	202862050	+	0	NA	promoter-TSS (NR_002929)	promoter-TSS (NR_002929)	-194	NR_002929	148709		NR_002929	ENSG00000293264	ACTG1P25	AGPG	actin gamma 1 pseudogene 25	pseudo
131877	chr2	98722801	98723500	+	0	NA	intron (NM_012214, intron 2 of 15)	intron (NM_012214, intron 2 of 15)	7982	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
26775	chr10	22929101	22929700	+	0	NA	intron (NM_173081, intron 1 of 18)	L1ME4a|LINE|L1	1347	NM_001282746	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
36529	chr11	6484051	6484150	+	0	NA	3' UTR (NM_012192, exon 3 of 3)	3' UTR (NM_012192, exon 3 of 3)	2599	NM_012192	26515		NM_012192	ENSG00000132286	TIMM10B	FXC1|TIM10B|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding
127296	chr2	38747941	38748560	+	0	NA	intron (NM_001031684, intron 4 of 7)	AluJb|SINE|Alu	3111	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
121487	chr19	47128501	47129030	+	0	NA	Intergenic	AluJr|SINE|Alu	-2070	NM_001145713	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
26614	chr10	22334201	22334550	+	0	NA	Intergenic	Intergenic	-11070	NM_001253855	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
60550	chr13	41475771	41476130	+	0	NA	Intergenic	L1PA7|LINE|L1	18400	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
37883	chr11	33990701	33991400	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-60681	NM_005898	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
195030	chr6	35476021	35477530	+	0	NA	intron (NM_003214, intron 8 of 12)	L1ME4a|LINE|L1	6267	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
184359	chr5	97009321	97009790	+	0	NA	intron (NM_175920, intron 11 of 17)	intron (NM_175920, intron 11 of 17)	51122	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
175186	chr4	56434671	56436600	+	0	NA	promoter-TSS (NM_001079524)	promoter-TSS (NM_001079524)	-20	NR_156493	5471		NM_002703	ENSG00000128059	PPAT	ATASE|GPAT|PRAT	phosphoribosyl pyrophosphate amidotransferase	protein-coding
63192	chr13	113772071	113772230	+	0	NA	intron (NM_001348663, intron 3 of 7)	L1MB8|LINE|L1	12924	NM_182614	348013		NM_182614	ENSG00000184497	TMEM255B	FAM70B	transmembrane protein 255B	protein-coding
173826	chr4	18418101	18418500	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-396425	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
114675	chr19	13091421	13092250	+	0	NA	intron (NM_001271043, intron 10 of 10)	intron (NM_001271043, intron 10 of 10)	11023	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
51475	chr12	52066301	52066900	+	0	NA	Intergenic	Intergenic	-3374	NM_021934	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
180857	chr5	32597271	32597650	+	0	NA	intron (NM_006713, intron 3 of 4)	L1MB2|LINE|L1	11903	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
43541	chr11	82898951	82899660	+	0	NA	intron (NM_199418, intron 1 of 9)	MIRb|SINE|MIR	1125	NM_005040	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
211450	chr7	105080621	105081630	+	0	NA	intron (NM_182931, intron 12 of 26)	AluY|SINE|Alu	66920	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
107547	chr18	48776901	48777950	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	106825	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
174973	chr4	49633851	49634550	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	647558	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
142919	chr20	18287651	18289050	+	0	NA	promoter-TSS (NM_001283008)	promoter-TSS (NM_001283008)	122	NM_001352453	7692		NM_003434	ENSG00000125846	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
51323	chr12	51328201	51329100	+	0	NA	intron (NM_001971, intron 7 of 7)	intron (NM_001971, intron 7 of 7)	-3982	NM_001290007	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
237549	chrX	120559721	120560090	+	0	NA	promoter-TSS (NM_001369145)	promoter-TSS (NM_001369145)	-7	NM_001369145	8450		NM_003588	ENSG00000158290	CUL4B	CUL-4B|MRXHF2|MRXS15|MRXSC|SFM2	cullin 4B	protein-coding
183563	chr5	80140471	80140850	+	0	NA	3' UTR (NM_001174072, exon 12 of 12)	3' UTR (NM_001174072, exon 12 of 12)	-56995	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
128417	chr2	55267551	55267650	+	0	NA	5' UTR (NM_001321005, exon 3 of 15)	5' UTR (NM_001321005, exon 3 of 15)	1579	NM_001005369	4528		NM_002453	ENSG00000085760	MTIF2	-	mitochondrial translational initiation factor 2	protein-coding
206602	chr7	35805751	35806130	+	0	NA	intron (NM_001788, intron 1 of 12)	intron (NM_001788, intron 1 of 12)	4721	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
33842	chr10	124224251	124224830	+	0	NA	Intergenic	Intergenic	-130942	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
194097	chr6	31923021	31923430	+	0	NA	intron (NM_001178063, intron 1 of 13).5	intron (NM_001178063, intron 1 of 13).5	-4492	NM_001282458	717		NM_000063	ENSG00000166278	C2	ARMD14|CO2	complement C2	protein-coding
229959	chr9	126702321	126703200	+	0	NA	Intergenic	MIRb|SINE|MIR	88832	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
170008	chr3	180909421	180909680	+	0	NA	Intergenic	Intergenic	-3120	NM_001013439	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
211044	chr7	102432601	102434400	+	0	NA	promoter-TSS (NM_001126340)	promoter-TSS (NM_001126340)	-30	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
235312	chrX	42888551	42888890	+	0	NA	Intergenic	L1PA2|LINE|L1	-110557	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
6304	chr1	27627101	27627700	+	0	NA	promoter-TSS (NM_001042729)	promoter-TSS (NM_001042729)	-803	NM_001042729	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
136254	chr2	174630501	174631030	+	0	NA	intron (NM_001375832, intron 1 of 8)	intron (NM_001375832, intron 1 of 8)	3840	NM_001375837	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
227407	chr9	89538321	89539530	+	0	NA	Intergenic	Intergenic	-40812	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
68268	chr14	77042171	77042750	+	0	NA	intron (NR_110554, intron 1 of 3)	intron (NR_110554, intron 1 of 3)	1411	NR_110554	283575		NR_110554	ENSG00000246548	LINC02288	-	long intergenic non-protein coding RNA 2288	ncRNA
69134	chr14	92540821	92541530	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	27394	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
26255	chr10	14656971	14657330	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-52749	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
169235	chr3	157141101	157141780	+	0	NA	Intergenic	AluJo|SINE|Alu	-18438	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
112358	chr19	5961551	5963280	+	0	NA	intron (NM_003624, intron 1 of 16)	L2a|LINE|L2	15725	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
206952	chr7	38250451	38250700	+	0	NA	Intergenic	Intergenic	23072	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
186129	chr5	134151651	134151980	+	0	NA	3' UTR (NM_170679, exon 6 of 6)	3' UTR (NM_170679, exon 6 of 6)	25135	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
168925	chr3	152352421	152353130	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-11785	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
21641	chr1	206634201	206634680	+	0	NA	Intergenic	Intergenic	-1096	NM_003582	8444		NM_003582	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual specificity tyrosine phosphorylation regulated kinase 3	protein-coding
25649	chr10	8294801	8295000	+	0	NA	Intergenic	L1ME4c|LINE|L1	-26595	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
96603	chr17	40540271	40542400	+	0	NA	Intergenic	(GTGC)n|Simple_repeat|Simple_repeat	19059	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
102747	chr17	76263871	76264030	+	0	NA	Intergenic	AluJo|SINE|Alu	-1398	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
232749	chr9	136660001	136660200	+	0	NA	intron (NR_046367, intron 1 of 9)	intron (NR_046367, intron 1 of 9)	321	NR_135132	101928612		NR_135132	ENSG00000228401	HSPC324	-	uncharacterized LOC101928612	ncRNA
59221	chr13	23406901	23407220	+	0	NA	intron (NM_014363, intron 2 of 9)	intron (NM_014363, intron 2 of 9)	-11911	NR_103450	100506680		NR_103450	ENSG00000229558	SACS-AS1	-	SACS antisense RNA 1	ncRNA
229609	chr9	123867901	123868350	+	0	NA	intron (NR_148208, intron 2 of 20)	MLT1K|LTR|ERVL-MaLR	62001	NM_001352968	57706		NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
24676	chr1	247126821	247127150	+	0	NA	intron (NM_001243740, intron 3 of 3)	MER57E3|LTR|ERV1	-14568	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
217075	chr8	23682221	23683280	+	0	NA	exon (NM_006167, exon 1 of 2)	exon (NM_006167, exon 1 of 2)	139	NM_001256339	4824		NM_006167	ENSG00000167034	NKX3-1	BAPX2|NKX3|NKX3.1|NKX3A	NK3 homeobox 1	protein-coding
159746	chr3	16178351	16178650	+	0	NA	intron (NM_054110, intron 1 of 9)	intron (NM_054110, intron 1 of 9)	3820	NM_001319051	117248		NM_054110	ENSG00000131386	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
18533	chr1	162036821	162037280	+	0	NA	Intergenic	AluSx|SINE|Alu	-12585	NM_015441	25903		NM_015441	ENSG00000162745	OLFML2B	-	olfactomedin like 2B	protein-coding
133436	chr2	119363901	119364100	+	0	NA	intron (NM_001322329, intron 1 of 6)	AluJb|SINE|Alu	2742	NM_001017927	130355		NM_001017927	ENSG00000186132	C2orf76	AIM29	chromosome 2 open reading frame 76	protein-coding
122038	chr19	48634071	48634900	+	0	NA	intron (NM_001352, intron 2 of 3)	intron (NM_001352, intron 2 of 3)	2894	NM_001352	1628		NM_001352	ENSG00000105516	DBP	DABP|taxREB302	D-box binding PAR bZIP transcription factor	protein-coding
180351	chr5	6728101	6728500	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	14868	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
75034	chr15	64144421	64145030	+	0	NA	TTS (NM_148955)	TTS (NM_148955)	-7006	NR_073534	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
75817	chr15	69396321	69396630	+	0	NA	TTS (NR_132970)	TTS (NR_132970)	-17874	NR_160295	9493		NM_004856	ENSG00000137807	KIF23	CDA3|CDAIII|CDAN3|CDAN3A|CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
89979	chr16	89836351	89836650	+	0	NA	intron (NM_032451, intron 1 of 14)	L1ME2z|LINE|L1	8025	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
119332	chr19	39950571	39950730	+	0	NA	Intergenic	PRIMA41-int|LTR|ERV1	-16024	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
107792	chr18	51152001	51152780	+	0	NA	Intergenic	Intergenic	45291	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
45516	chr11	118698651	118701130	+	0	NA	Intergenic	L1MEd|LINE|L1	-20240	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
19924	chr1	184408821	184409080	+	0	NA	intron (NM_030806, intron 1 of 5)	intron (NM_030806, intron 1 of 5)	21921	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
203899	chr7	1494851	1494950	+	0	NA	intron (NM_001080453, intron 13 of 47)	intron (NM_001080453, intron 13 of 47)	9489	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
133897	chr2	130156851	130156950	+	0	NA	intron (NM_017951, intron 12 of 19)	intron (NM_017951, intron 12 of 19)	-11788	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
48148	chr12	7920851	7921640	+	0	NA	3' UTR (NM_006931, exon 10 of 10)	3' UTR (NM_006931, exon 10 of 10)	14942	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
162403	chr3	48226871	48227430	+	0	NA	Intergenic	LTR16C|LTR|ERVL	3655	NM_004345	820		NM_004345	ENSG00000164047	CAMP	CAP-18|CAP18|CRAMP|FALL-39|FALL39|HSD26|LL37	cathelicidin antimicrobial peptide	protein-coding
176515	chr4	94621451	94621800	+	0	NA	intron (NM_006457, intron 8 of 12)	intron (NM_006457, intron 8 of 12)	135908	NR_121610	100507012		NR_121610	ENSG00000249599	BMPR1B-DT	BMPR1B-AS1	BMPR1B divergent transcript	ncRNA
129052	chr2	65064521	65065280	+	0	NA	intron (NM_015147, intron 1 of 6)	intron (NM_015147, intron 1 of 6)	8484	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
48841	chr12	12367551	12368130	+	0	NA	intron (NM_058169, intron 2 of 3)	intron (NM_058169, intron 2 of 3)	10762	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
94672	chr17	30372701	30372900	+	0	NA	Intergenic	Intergenic	-6127	NM_001304	1362		NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
198872	chr6	109447901	109448400	+	0	NA	intron (NM_022765, intron 13 of 24)	(CA)n|Simple_repeat|Simple_repeat	-6979	NM_001111298	285755		NM_173672	ENSG00000185250	PPIL6	PPIase|RSPH12|bA425D10.6|dJ919F19.1	peptidylprolyl isomerase like 6	protein-coding
111247	chr19	3522671	3523850	+	0	NA	intron (NM_001136198, intron 1 of 12)	intron (NM_001136198, intron 1 of 12)	304	NM_001136198	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
187302	chr5	141605651	141606730	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	12810	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
131371	chr2	96206771	96206930	+	0	NA	intron (NM_001385622, intron 1 of 7)	intron (NM_001385622, intron 1 of 7)	-1566	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
2738	chr1	10667751	10668050	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	128746	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
8899	chr1	43934651	43935550	+	0	NA	intron (NM_057090, intron 2 of 4)	intron (NM_057090, intron 2 of 4)	1299	NM_057091	9048		NM_003976	ENSG00000117407	ARTN	ART|ENOVIN|EVN|NBN	artemin	protein-coding
111323	chr19	3624551	3625080	+	0	NA	intron (NM_021231, intron 1 of 10)	intron (NM_021231, intron 1 of 10)	1975	NM_001080543	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
106059	chr18	9094871	9095700	+	0	NA	Intergenic	Intergenic	-7414	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
236057	chrX	56343321	56343800	+	0	NA	Intergenic	L1PA10|LINE|L1	110402	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
62379	chr13	99251801	99252300	+	0	NA	intron (NR_026644, intron 4 of 8)	FLAM_A|SINE|Alu	6378	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
44399	chr11	103110621	103111150	+	0	NA	intron (NM_001377, intron 1 of 88)	AluSq2|SINE|Alu	1459	NM_001080463	79659		NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding
42085	chr11	67502301	67502830	+	0	NA	exon (NM_004910, exon 3 of 24)	exon (NM_004910, exon 3 of 24)	2798	NM_004910	9600		NM_004910	ENSG00000110697	PITPNM1	DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9	phosphatidylinositol transfer protein membrane associated 1	protein-coding
88417	chr16	84699271	84701180	+	0	NA	intron (NM_005153, intron 1 of 13)	CpG	225	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
10116	chr1	59084071	59084430	+	0	NA	intron (NR_110626, intron 2 of 2)	intron (NR_110626, intron 2 of 2)	62557	NR_027120	729467		NR_027120	ENSG00000224609	HSD52	-	uncharacterized LOC729467	ncRNA
143215	chr20	24964221	24964480	+	0	NA	intron (NM_020531, intron 8 of 8)	intron (NM_020531, intron 8 of 8)	15081	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
125363	chr2	11124171	11124700	+	0	NA	intron (NR_040080, intron 4 of 8)	intron (NR_040080, intron 4 of 8)	7741	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
192118	chr6	16740271	16740430	+	0	NA	intron (NR_152112, intron 1 of 1)	intron (NR_152112, intron 1 of 1)	19834	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
135913	chr2	171485351	171485650	+	0	NA	TTS (NM_001164821)	TTS (NM_001164821)	-36733	NM_001256909	79901		NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
81370	chr16	4937071	4937580	+	0	NA	promoter-TSS (NM_002705)	promoter-TSS (NM_002705)	-177	NM_002705	5493		NM_002705	ENSG00000118898	PPL	-	periplakin	protein-coding
147856	chr20	62811151	62811250	+	0	NA	intron (NM_007346, intron 5 of 6)	AluSx1|SINE|Alu	-5613	NR_102430	101409261		NR_102430		OGFR-AS1	-	OGFR antisense RNA 1	ncRNA
131658	chr2	97657571	97658130	+	0	NA	intron (NM_005735, intron 8 of 10)	intron (NM_005735, intron 8 of 10)	6194	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
87811	chr16	75565801	75567080	+	0	NA	promoter-TSS (NM_007285)	promoter-TSS (NM_007285)	61	NM_007285	11345		NM_007285	ENSG00000034713	GABARAPL2	ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2	GABA type A receptor associated protein like 2	protein-coding
36860	chr11	10414421	10414900	+	0	NA	intron (NR_103765, intron 3 of 3)	intron (NR_103765, intron 3 of 3)	-35661	NM_001172431	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
138455	chr2	206249471	206249630	+	0	NA	intron (NR_104359, intron 2 of 5).2	MER21C|LTR|ERVL	-25113	NM_020923	57683		NM_020923	ENSG00000204186	ZDBF2	Slx9	zinc finger DBF-type containing 2	protein-coding
132724	chr2	109170851	109170950	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-29312	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
237576	chrX	123648371	123648880	+	0	NA	intron (NM_001081550, intron 12 of 38)	L1PA7|LINE|L1	84427	NM_001081550	57187		NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|XLID12|dJ506G2.1|hTREX120	THO complex subunit 2	protein-coding
105528	chr17	83119821	83120800	+	0	NA	Intergenic	L1MB7|LINE|L1	39164	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
135282	chr2	159920721	159920980	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-16094	NM_001198760	100526664		NM_001198759	ENSG00000248672	LY75-CD302	CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6	LY75-CD302 readthrough	protein-coding
19677	chr1	180955221	180955480	+	0	NA	promoter-TSS (NR_145481)	promoter-TSS (NR_145481)	-463	NR_145481	103344928		NR_145481	ENSG00000232586	KIAA1614-AS1	-	KIAA1614 antisense RNA 1	ncRNA
47447	chr12	3743651	3743950	+	0	NA	intron (NM_032680, intron 1 of 10)	intron (NM_032680, intron 1 of 10)	9309	NM_032680	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
205984	chr7	26179051	26180380	+	0	NA	intron (NM_004289, intron 2 of 3)	AluJb|SINE|Alu	21031	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
13180	chr1	112465571	112466550	+	0	NA	promoter-TSS (NM_004185)	promoter-TSS (NM_004185)	-481	NM_001291880	7482		NM_004185	ENSG00000134245	WNT2B	WNT13	Wnt family member 2B	protein-coding
125069	chr2	9633001	9634000	+	0	NA	Intergenic	L2c|LINE|L2	-2503	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
210177	chr7	98515751	98516050	+	0	NA	Intergenic	Intergenic	-101385	NM_002523	4885		NM_002523	ENSG00000106236	NPTX2	NARP|NP-II|NP2	neuronal pentraxin 2	protein-coding
36895	chr11	10777951	10778250	+	0	NA	intron (NM_001346279, intron 23 of 23)	intron (NM_001346279, intron 23 of 23)	23508	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
131908	chr2	98807151	98807450	+	0	NA	intron (NM_207362, intron 7 of 9)	intron (NM_207362, intron 7 of 9)	-35402	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
36401	chr11	4071571	4071730	+	0	NA	intron (NR_168436, intron 6 of 7)	(TTA)n|Simple_repeat|Simple_repeat	-23035	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
87118	chr16	68756151	68757230	+	0	NA	intron (NM_004360, intron 2 of 15)	intron (NM_004360, intron 2 of 15)	19398	NM_001317185	999		NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
111029	chr19	3073171	3074130	+	0	NA	Intergenic	AluSc|SINE|Alu	-8936	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
106353	chr18	13207301	13207500	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-10282	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
9668	chr1	52696401	52696600	+	0	NA	intron (NM_023077, intron 1 of 2)	intron (NM_023077, intron 1 of 2)	1847	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
229731	chr9	124876671	124877030	+	0	NA	intron (NM_030978, intron 5 of 5)	intron (NM_030978, intron 5 of 5)	14720	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
1229	chr1	2277651	2278080	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	49546	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
51093	chr12	50013671	50014200	+	0	NA	intron (NM_001320005, intron 1 of 15)	intron (NM_001320005, intron 1 of 15)	11559	NM_001319999	29127		NM_013277	ENSG00000161800	RACGAP1	CDAN3B|CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
100448	chr17	61395871	61396280	+	0	NA	intron (NR_125750, intron 1 of 2)	CpG	3531	NR_125749	103689912		NR_125749	ENSG00000267280	TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
201846	chr6	150169671	150169830	+	0	NA	intron (NM_030949, intron 1 of 3)	MLT1G1|LTR|ERVL-MaLR	26706	NM_030949	81706		NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1 regulatory inhibitor subunit 14C	protein-coding
218223	chr8	42035251	42035750	+	0	NA	intron (NM_001305878, intron 2 of 13)	L2|LINE|L2	-16250	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
37130	chr11	13339151	13339730	+	0	NA	intron (NM_001351821, intron 3 of 19)	(AC)n|Simple_repeat|Simple_repeat	61650	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
112671	chr19	7010071	7010230	+	0	NA	Intergenic	Intergenic	-3735	NR_024372	497049		NM_001011541		MARK2P21	-	MARK2 pseudogene 21	pseudo
219933	chr8	86511551	86512230	+	0	NA	intron (NM_001317807, intron 1 of 9)	intron (NM_001317807, intron 1 of 9)	2467	NM_001317807	51115		NM_016033	ENSG00000176623	RMDN1	CGI-90|FAM82B|RMD-1|RMD1	regulator of microtubule dynamics 1	protein-coding
99628	chr17	50567301	50567650	+	0	NA	intron (NM_198376, intron 1 of 34)	intron (NM_198376, intron 1 of 34)	-5367	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
180678	chr5	18766371	18766700	+	0	NA	Intergenic	L2|LINE|L2	959261	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
96069	chr17	39597321	39597700	+	0	NA	Intergenic	Intergenic	10410	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
208758	chr7	73535971	73536130	+	0	NA	TTS (NR_036682)	TTS (NR_036682)	-13757	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
132623	chr2	108618621	108619450	+	0	NA	intron (NM_001193482, intron 1 of 9)	intron (NM_001193482, intron 1 of 9)	-2216	NM_001193484	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
199085	chr6	111662121	111662380	+	0	NA	intron (NM_001370529, intron 11 of 11)	L1ME1|LINE|L1	-55976	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
218347	chr8	42922851	42923280	+	0	NA	intron (NM_032410, intron 2 of 21)	L1MB7|LINE|L1	26087	NM_032410	84376		NM_032410	ENSG00000168172	HOOK3	HK3	hook microtubule tethering protein 3	protein-coding
189546	chr5	174019671	174019930	+	0	NA	Intergenic	L1PA2|LINE|L1	-25906	NM_015980	51617		NM_015980	ENSG00000170091	NSG2	CALY3|HMP19	neuronal vesicle trafficking associated 2	protein-coding
238271	chrX	149286971	149287150	+	0	NA	Intergenic	Intergenic	218246	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
104770	chr17	81705501	81706400	+	0	NA	intron (NM_002949, intron 3 of 4)	intron (NM_002949, intron 3 of 4)	2583	NM_002949	6182		NM_002949	ENSG00000262814	MRPL12	5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12|bL12m	mitochondrial ribosomal protein L12	protein-coding
27303	chr10	30446101	30446500	+	0	NA	intron (NM_001320961, intron 2 of 7)	AluSz|SINE|Alu	11654	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
141473	chr2	241078051	241079150	+	0	NA	intron (NR_138463, intron 6 of 6)	L1MB7|LINE|L1	23687	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
19368	chr1	173872171	173872330	+	0	NA	intron (NM_001369846, intron 3 of 3)	AluY|SINE|Alu	-3368	NR_152521	60674		NR_002578	ENSG00000234741	GAS5	NCRNA00030|SNHG2	growth arrest specific 5	ncRNA
230745	chr9	128881541	128883530	+	0	NA	promoter-TSS (NM_001352991)	promoter-TSS (NM_001352991)	-12	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
156276	chr22	40452071	40452330	+	0	NA	intron (NM_001282661, intron 4 of 13)	AluSc8|SINE|Alu	11240	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
122974	chr19	50793471	50793900	+	0	NA	exon (NM_033068, exon 7 of 11)	exon (NM_033068, exon 7 of 11)	3270	NM_033068	93650		NM_033068	ENSG00000142513	ACP4	ACPT|AI1J	acid phosphatase 4	protein-coding
190893	chr6	2767421	2768630	+	0	NA	intron (NM_020135, intron 1 of 6)	intron (NM_020135, intron 1 of 6)	2351	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
4103	chr1	19253401	19253750	+	0	NA	intron (NM_016183, intron 1 of 7)	L2a|LINE|L2	1770	NM_016183	51154		NM_016183	ENSG00000053372	MRTO4	C1orf33|MRT4|dJ657E11.4	MRT4 homolog, ribosome maturation factor	protein-coding
225962	chr9	41115171	41115550	+	0	NA	intron (NR_147036, intron 2 of 6)	SATR1|Satellite|Satellite	-6430	NR_147037	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
72208	chr15	30173021	30174150	+	0	NA	Intergenic	Intergenic	-22451	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
94225	chr17	28650301	28650500	+	0	NA	intron (NM_006923, intron 2 of 2)	intron (NM_006923, intron 2 of 2)	-5241	NM_001363827	9703		NM_014680	ENSG00000007202	BLTP2	BCOX|BCOX1|CT101|FMP27|Hob|KIAA0100	bridge-like lipid transfer protein family member 2	protein-coding
186994	chr5	139740371	139740730	+	0	NA	TTS (NR_105052)	TTS (NR_105052)	5673	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
211922	chr7	112455071	112455780	+	0	NA	intron (NM_001197079, intron 1 of 11)	AluSx3|SINE|Alu	3367	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
149448	chr21	31604421	31604950	+	0	NA	Intergenic	Intergenic	45452	NM_001321023	150051		NM_001321023	ENSG00000237594	TIAM1-AS1	-	TIAM1 antisense RNA 1	ncRNA
157306	chr22	44492371	44492530	+	0	NA	TTS (NM_032287)	TTS (NM_032287)	5783	NM_032287	84247		NM_032287	ENSG00000188636	RTL6	LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2	retrotransposon Gag like 6	protein-coding
30461	chr10	79135771	79136700	+	0	NA	intron (NM_020338, intron 2 of 24)	intron (NM_020338, intron 2 of 24)	67269	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
203877	chr7	1476121	1476580	+	0	NA	exon (NM_001080453, exon 38 of 48)	exon (NM_001080453, exon 38 of 48)	-16880	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
133879	chr2	129885871	129886030	+	0	NA	Intergenic	Intergenic	-8459	NR_149127	105373615		NR_149127	ENSG00000229536	LINC02572	-	long intergenic non-protein coding RNA 2572	ncRNA
107568	chr18	48827901	48828100	+	0	NA	intron (NM_014772, intron 10 of 11)	(CCCACC)n|Simple_repeat|Simple_repeat	114807	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
237772	chrX	129769421	129770280	+	0	NA	TTS (NM_003399)	TTS (NM_003399)	-10099	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
206819	chr7	37198901	37199630	+	0	NA	intron (NM_014800, intron 13 of 21)	intron (NM_014800, intron 13 of 21)	154403	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
110588	chr19	2163351	2164650	+	0	NA	promoter-TSS (NM_032482)	promoter-TSS (NM_032482)	67	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
136817	chr2	181904101	181904330	+	0	NA	intron (NR_109843, intron 8 of 17)	intron (NR_109843, intron 8 of 17)	12485	NM_006751	6744		NM_006751	ENSG00000138434	ITPRID2	CS-1|CS1|KRAP|SPAG13|SSFA2	ITPR interacting domain containing 2	protein-coding
182581	chr5	65966171	65966330	+	0	NA	intron (NM_001253697, intron 1 of 25)	Tigger3b|DNA|TcMar-Tigger	-20677	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
89602	chr16	89292071	89292930	+	0	NA	intron (NR_045839, intron 5 of 9)	intron (NR_045839, intron 5 of 9)	-3628	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
172744	chr4	2837701	2839500	+	0	NA	3' UTR (NM_003023, exon 13 of 13)	3' UTR (NM_003023, exon 13 of 13)	-5244	NM_001354759	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
98181	chr17	46102251	46103230	+	0	NA	intron (NM_015443, intron 2 of 14).2	L2a|LINE|L2	90042	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
76330	chr15	74404901	74405100	+	0	NA	Intergenic	AluSx1|SINE|Alu	6432	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
50436	chr12	47651271	47652150	+	0	NA	Intergenic	AluSz6|SINE|Alu	54320	NM_024604	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
220621	chr8	100931001	100931580	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	19281	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
173595	chr4	10538071	10538300	+	0	NA	intron (NM_052964, intron 11 of 18)	AluSx|SINE|Alu	-80759	NM_001375817	85460		NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
201391	chr6	145761651	145761830	+	0	NA	intron (NR_038246, intron 1 of 2)	MER20|DNA|hAT-Charlie	-25717	NR_153398	7957		NM_005670	ENSG00000112425	EPM2A	EPM2|MELF|MELF2	EPM2A glucan phosphatase, laforin	protein-coding
30800	chr10	84424671	84425200	+	0	NA	promoter-TSS (NM_001284242)	promoter-TSS (NM_001284242)	-4	NM_001284243	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
229812	chr9	125631221	125631950	+	0	NA	intron (NM_024117, intron 4 of 10)	intron (NM_024117, intron 4 of 10)	75623	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
34279	chr10	131907451	131908280	+	0	NA	intron (NR_033191, intron 2 of 9)	intron (NR_033191, intron 2 of 9)	6857	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
11574	chr1	91530021	91530650	+	0	NA	Intergenic	L2c|LINE|L2	29227	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
88650	chr16	85646451	85646750	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	33278	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
212195	chr7	117119521	117119980	+	0	NA	intron (NM_001369606, intron 4 of 16)	intron (NM_001369606, intron 4 of 16)	25842	NR_002331	93654		NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
35246	chr11	849101	850500	+	0	NA	intron (NM_001025239, intron 2 of 7)	CpG	5354	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
85521	chr16	50800121	50800380	+	0	NA	non-coding (NR_166071, exon 17 of 17)	non-coding (NR_166071, exon 17 of 17)	-6422	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
81529	chr16	9095721	9096880	+	0	NA	intron (NM_014117, intron 2 of 3)	intron (NM_014117, intron 2 of 3)	4656	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
44691	chr11	111436601	111437000	+	0	NA	Intergenic	Intergenic	-18614	NR_046085	100132078		NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
62671	chr13	102602501	102602880	+	0	NA	intron (NR_160411, intron 1 of 28)	intron (NR_160411, intron 1 of 28)	5704	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
26038	chr10	12358221	12358480	+	0	NA	intron (NM_153498, intron 1 of 10)	AluSx|SINE|Alu	8803	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
94909	chr17	31842221	31843030	+	0	NA	Intergenic	Intergenic	16337	NM_001330176	55352		NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
146295	chr20	49149051	49149350	+	0	NA	intron (NM_017453, intron 5 of 13)	AluSx1|SINE|Alu	39134	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
127029	chr2	37086671	37087130	+	0	NA	intron (NM_001371859, intron 2 of 9)	MLT1K|LTR|ERVL-MaLR	2382	NM_001371856	253635		NM_174931	ENSG00000152133	GPATCH11	CCDC75|CENP-Y|CENPY	G-patch domain containing 11	protein-coding
210924	chr7	101231501	101231700	+	0	NA	TTS (NM_001185080)	TTS (NM_001185080)	6202	NM_014343	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
98888	chr17	48575521	48576130	+	0	NA	promoter-TSS (NM_001330323)	promoter-TSS (NM_001330323)	-728	NM_001330323	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
188564	chr5	157038801	157039000	+	0	NA	intron (NM_012206, intron 5 of 7)	AluJb|SINE|Alu	19341	NM_012206	26762		NM_012206	ENSG00000113249	HAVCR1	CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
194079	chr6	31883471	31883830	+	0	NA	intron (NM_001318833, intron 22 of 27).6	MER91A|DNA|hAT-Tip100	-4604	NM_001178044	80736		NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1	solute carrier family 44 member 4	protein-coding
218431	chr8	47738801	47739100	+	0	NA	promoter-TSS (NM_005195)	promoter-TSS (NM_005195)	-786	NM_005195	1052		NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT enhancer binding protein delta	protein-coding
172643	chr4	2547251	2547750	+	0	NA	intron (NM_001366318, intron 1 of 20)	AluJo|SINE|Alu	10853	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
69840	chr14	99240501	99242100	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	30897	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
200208	chr6	131208721	131209130	+	0	NA	intron (NR_164834, intron 8 of 9)	MLT1I|LTR|ERVL-MaLR	-41479	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
27061	chr10	27147371	27148050	+	0	NA	intron (NM_139312, intron 2 of 19)	LTR41|LTR|ERVL	6674	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
8320	chr1	40153071	40153630	+	0	NA	Intergenic	ERV24_Prim-int|LTR|ERV1	-8037	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
45224	chr11	117930501	117931400	+	0	NA	Intergenic	Intergenic	-1497	NM_001206790	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
139863	chr2	230602621	230603800	+	0	NA	Intergenic	L1M2|LINE|L1	97319	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
189742	chr5	176578001	176578630	+	0	NA	intron (NM_017675, intron 15 of 31)	MER53|DNA|hAT	28973	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
112945	chr19	7729121	7729600	+	0	NA	3' UTR (NM_001244856, exon 9 of 9)	3' UTR (NM_001244856, exon 9 of 9)	2811	NM_198492	339390		NM_198492	ENSG00000182566	CLEC4G	DTTR431|LP2698|LSECtin|UNQ431	C-type lectin domain family 4 member G	protein-coding
64444	chr14	24222921	24223180	+	0	NA	intron (NR_137631, intron 1 of 6)	AluSx3|SINE|Alu	-6980	NM_001199821	145553		NM_138476	ENSG00000213920	MDP1	FN6PASE|MDP-1	magnesium dependent phosphatase 1	protein-coding
123489	chr19	54192851	54193200	+	0	NA	intron (NM_001282333, intron 4 of 5).4	intron (NM_001282333, intron 4 of 5).4	1717	NM_001077446	79042		NM_024075	ENSG00000170892	TSEN34	LENG5|PCH2C|SEN34|SEN34L	tRNA splicing endonuclease subunit 34	protein-coding
227922	chr9	94213501	94214080	+	0	NA	intron (NR_160773, intron 1 of 2)	intron (NR_160773, intron 1 of 2)	-9224	NR_046163	158257		NR_046163	ENSG00000230262	LINC02603	MIRLET7DHG	long intergenic non-protein coding RNA 2603	ncRNA
25341	chr10	6269551	6269650	+	0	NA	Intergenic	Intergenic	-56944	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
21349	chr1	204707221	204707480	+	0	NA	Intergenic	5S|rRNA|rRNA	-21612	NM_201630	10446		NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
90009	chr16	89886571	89886930	+	0	NA	intron (NM_014972, intron 4 of 17)	AluSp|SINE|Alu	13158	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
122127	chr19	48834471	48834830	+	0	NA	intron (NM_016246, intron 2 of 8)	MSR1|Satellite|Satellite	1841	NM_016246	51171		NM_016246	ENSG00000087076	HSD17B14	DHRS10|SDR47C1|retSDR3	hydroxysteroid 17-beta dehydrogenase 14	protein-coding
192220	chr6	18245371	18245930	+	0	NA	intron (NM_001134709, intron 6 of 9)	intron (NM_001134709, intron 6 of 9)	18880	NM_003472	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
42959	chr11	73660621	73661450	+	0	NA	intron (NM_001130036, intron 5 of 5)	CpG	12122	NM_001130036	58473		NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding
180800	chr5	32299201	32299600	+	0	NA	intron (NM_001294344, intron 1 of 13)	intron (NM_001294344, intron 1 of 13)	13539	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
7122	chr1	32176601	32177100	+	0	NA	TTS (NM_012316)	TTS (NM_012316)	-2825	NM_175852	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
186272	chr5	134535871	134536030	+	0	NA	intron (NM_001289985, intron 2 of 11)	intron (NM_001289985, intron 2 of 11)	9842	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
211407	chr7	105035571	105035800	+	0	NA	intron (NM_182931, intron 1 of 26)	AluSx|SINE|Alu	21480	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
109103	chr18	79983771	79984500	+	0	NA	intron (NM_001305564, intron 1 of 2)	intron (NM_001305564, intron 1 of 2)	4428	NR_131175	10907		NM_006701	ENSG00000141759	TXNL4A	BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD	thioredoxin like 4A	protein-coding
90663	chr17	1690471	1690630	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-5683	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
122292	chr19	49097651	49098650	+	0	NA	intron (NM_003089, intron 4 of 9)	intron (NM_003089, intron 4 of 9)	12699	NM_001301069	6625		NM_003089	ENSG00000104852	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein U1 subunit 70	protein-coding
108291	chr18	63315721	63316230	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	3794	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
234790	chrX	24011571	24011930	+	0	NA	intron (NM_030624, intron 2 of 3)	AluJr|SINE|Alu	15436	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
37844	chr11	33697321	33697650	+	0	NA	TTS (NM_001166692)	TTS (NM_001166692)	3255	NM_001166692	100131378		NM_001166692	ENSG00000205177	C11orf91	-	chromosome 11 open reading frame 91	protein-coding
31997	chr10	100956851	100957230	+	0	NA	intron (NM_018121, intron 18 of 19)	intron (NM_018121, intron 18 of 19)	-15489	NM_001203244	57715		NM_017893	ENSG00000095539	SEMA4G	-	semaphorin 4G	protein-coding
53149	chr12	57896101	57897130	+	0	NA	promoter-TSS (NR_148947)	promoter-TSS (NR_148947)	-133	NR_148947	283387		NR_148947	ENSG00000245651	LOC283387	-	uncharacterized LOC283387	ncRNA
110949	chr19	2872001	2872450	+	0	NA	intron (NR_145838, intron 1 of 3)	LTR13|LTR|ERVK	4890	NM_024967	80032		NM_024967	ENSG00000172000	ZNF556	-	zinc finger protein 556	protein-coding
227044	chr9	83969551	83969650	+	0	NA	TTS (NR_029605)	TTS (NR_029605)	257	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
194373	chr6	32979351	32979450	+	0	NA	intron (NM_001199455, intron 10 of 12).4	intron (NM_001199455, intron 10 of 12).4	6316	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
3141	chr1	12475151	12476200	+	0	NA	intron (NM_018156, intron 66 of 68)	intron (NM_018156, intron 66 of 68)	-31571	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
144962	chr20	37185871	37186030	+	0	NA	intron (NM_001324306, intron 2 of 15)	MLT1E3|LTR|ERVL-MaLR	-6402	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
6755	chr1	30730471	30730980	+	0	NA	Intergenic	Intergenic	-7140	NM_002379	4146		NM_002379	ENSG00000162510	MATN1	CMP|CRTM	matrilin 1	protein-coding
148494	chr20	64067371	64068900	+	0	NA	intron (NM_198723, intron 5 of 10)	intron (NM_198723, intron 5 of 10)	4937	NM_003195	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
234461	chrX	17739151	17739480	+	0	NA	intron (NM_001037536, intron 1 of 5)	intron (NM_001037536, intron 1 of 5)	1822	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
10475	chr1	66345771	66346330	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	-8485	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
29940	chr10	73415771	73416330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1992	NM_004034	310		NM_001156	ENSG00000138279	ANXA7	ANX7|SNX|SYNEXIN	annexin A7	protein-coding
16021	chr1	152111051	152111470	+	0	NA	exon (NM_007113, exon 3 of 3)	exon (NM_007113, exon 3 of 3)	4194	NM_007113	7062		NM_007113	ENSG00000159450	TCHH	THH|THL|TRHY|UHS3	trichohyalin	protein-coding
158764	chr3	9395521	9397100	+	0	NA	intron (NR_132780, intron 1 of 3)	CpG	313	NR_132781	440944		NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
113276	chr19	8525471	8526650	+	0	NA	intron (NM_012335, intron 24 of 27)	AluSg4|SINE|Alu	-11893	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
159542	chr3	14555671	14556050	+	0	NA	Intergenic	Intergenic	-15518	NM_001080423	80852		NM_001080423	ENSG00000144596	GRIP2	-	glutamate receptor interacting protein 2	protein-coding
10323	chr1	64893951	64894300	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	72424	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
221075	chr8	116882151	116882450	+	0	NA	Intergenic	AluJb|SINE|Alu	-7500	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
183914	chr5	87392321	87392580	+	0	NA	TTS (NM_002890)	TTS (NM_002890)	20454	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
107596	chr18	48901871	48902030	+	0	NA	Intergenic	Intergenic	40857	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
142780	chr20	13106001	13106200	+	0	NA	intron (NM_018327, intron 6 of 11)	intron (NM_018327, intron 6 of 11)	97128	NM_018327	55304		NM_018327	ENSG00000172296	SPTLC3	C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b	serine palmitoyltransferase long chain base subunit 3	protein-coding
7017	chr1	31913951	31914480	+	0	NA	intron (NM_001369858, intron 2 of 4)	AluJb|SINE|Alu	23603	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
85670	chr16	56343621	56344080	+	0	NA	exon (NM_138736, exon 8 of 8)	exon (NM_138736, exon 8 of 8)	81139	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
210042	chr7	94512901	94513100	+	0	NA	intron (NM_022900, intron 1 of 17)	intron (NM_022900, intron 1 of 17)	3191	NM_001363427	64921		NM_022900	ENSG00000127995	CASD1	C7orf12|Cas1|NBLA04196|SOAT	CAS1 domain containing 1	protein-coding
61257	chr13	50067021	50067280	+	0	NA	intron (NR_152566, intron 5 of 13)	intron (NR_152566, intron 5 of 13)	14891	NR_152568	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
140103	chr2	231467271	231468050	+	0	NA	Intergenic	Intergenic	-3176	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
71053	chr14	104800101	104802680	+	0	NA	exon (NM_001137601, exon 1 of 1)	exon (NM_001137601, exon 1 of 1)	289	NM_001137601	100128927		NM_001137601	ENSG00000179627	ZBTB42	LCCS6|ZNF925	zinc finger and BTB domain containing 42	protein-coding
83283	chr16	24041921	24042580	+	0	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	-160866	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
166659	chr3	120052171	120052580	+	0	NA	intron (NM_001146156, intron 1 of 10)	intron (NM_001146156, intron 1 of 10)	32273	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
62520	chr13	99506771	99506930	+	0	NA	intron (NM_004800, intron 1 of 16)	intron (NM_004800, intron 1 of 16)	5378	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
45712	chr11	119086371	119086530	+	0	NA	intron (NM_001258209, intron 1 of 12)	AluSx3|SINE|Alu	-1537	NM_001024382	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
127323	chr2	38995071	38995300	+	0	NA	exon (NM_001382395, exon 20 of 22)	exon (NM_001382395, exon 20 of 22)	-34841	NR_028386	375196		NR_028386	ENSG00000269210	LOC375196	-	uncharacterized LOC375196	ncRNA
77527	chr15	84715451	84717150	+	0	NA	promoter-TSS (NM_014300)	promoter-TSS (NM_014300)	160	NM_001271919	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
47826	chr12	6594171	6594330	+	0	NA	intron (NM_001273, intron 15 of 39)	intron (NM_001273, intron 15 of 39)	12201	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
196750	chr6	45426171	45426330	+	0	NA	intron (NM_001278478, intron 1 of 5)	intron (NM_001278478, intron 1 of 5)	3975	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
12018	chr1	96721151	96723730	+	0	NA	promoter-TSS (NR_125356)	promoter-TSS (NR_125356)	-198	NR_125356	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
199553	chr6	118881671	118882100	+	0	NA	intron (NM_001378357, intron 8 of 13)	L1MB8|LINE|L1	-12267	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
210199	chr7	99000871	99001430	+	0	NA	intron (NM_001375524, intron 67 of 72)	intron (NM_001375524, intron 67 of 72)	-12015	NR_110102	101927550		NR_110102		LOC101927550	-	uncharacterized LOC101927550	ncRNA
158663	chr3	5057801	5058150	+	0	NA	Intergenic	Intergenic	-64317	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
166909	chr3	124901251	124901650	+	0	NA	promoter-TSS (NM_001354764)	promoter-TSS (NM_001354764)	-39	NM_001354764	3693		NM_002213	ENSG00000082781	ITGB5	-	integrin subunit beta 5	protein-coding
188105	chr5	150372221	150372680	+	0	NA	intron (NM_001371623, intron 7 of 26)	intron (NM_001371623, intron 7 of 26)	14753	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
197140	chr6	59526621	59527080	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1565404	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
73509	chr15	43771651	43772780	+	0	NA	TTS (NM_025165)	TTS (NM_025165)	4751	NM_025165	80237		NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
83076	chr16	22370621	22370880	+	0	NA	intron (NM_001802, intron 1 of 4)	intron (NM_001802, intron 1 of 4)	3869	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
152781	chr22	21812871	21813100	+	0	NA	intron (NM_138957, intron 1 of 7)	AluY|SINE|Alu	54660	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
127247	chr2	38690371	38690930	+	0	NA	intron (NM_138801, intron 4 of 6)	AluJb|SINE|Alu	24536	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
116664	chr19	18386001	18386550	+	0	NA	promoter-TSS (NR_036156)	promoter-TSS (NR_036156)	117	NM_004864	9518		NM_004864	ENSG00000130513	GDF15	GDF-15|HG|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB	growth differentiation factor 15	protein-coding
149467	chr21	31720371	31720950	+	0	NA	intron (NM_001145444, intron 1 of 18)	MIRb|SINE|MIR	11458	NM_001145445	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
19878	chr1	183604201	183604400	+	0	NA	Intergenic	Intergenic	-13386	NM_001127651	4688		NM_000433	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
214191	chr7	148503871	148504250	+	0	NA	Intergenic	Intergenic	-86706	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
159797	chr3	16327421	16328330	+	0	NA	intron (NM_015150, intron 7 of 9)	intron (NM_015150, intron 7 of 9)	62663	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
631	chr1	1334351	1334450	+	0	NA	TTS (NM_001330311)	TTS (NM_001330311)	3120	NM_152228	83756		NM_152228	ENSG00000169962	TAS1R3	T1R3	taste 1 receptor member 3	protein-coding
119717	chr19	41192821	41194180	+	0	NA	intron (NM_030622, intron 1 of 8)	intron (NM_030622, intron 1 of 8)	281	NM_030622	29785		NM_030622	ENSG00000167600	CYP2S1	CYPIIS1	cytochrome P450 family 2 subfamily S member 1	protein-coding
24132	chr1	235826571	235826930	+	0	NA	non-coding (NR_102436, exon 4 of 4)	non-coding (NR_102436, exon 4 of 4)	26310	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
124743	chr2	6881301	6881500	+	0	NA	intron (NM_080657, intron 1 of 5)	intron (NM_080657, intron 1 of 5)	3623	NM_080657	91543		NM_080657	ENSG00000134321	RSAD2	SAND|cig33|cig5|vig1	radical S-adenosyl methionine domain containing 2	protein-coding
87242	chr16	69753521	69753800	+	0	NA	intron (NM_014062, intron 2 of 8)	intron (NM_014062, intron 2 of 8)	1266	NM_014062	28987		NM_014062	ENSG00000141101	NOB1	ART-4|MST158|MSTP158|NOB1P|PSMD8BP1	NIN1 (RPN12) binding protein 1 homolog	protein-coding
198428	chr6	106093021	106093380	+	0	NA	intron (NM_001198, intron 2 of 6)	intron (NM_001198, intron 2 of 6)	-5741	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
52388	chr12	55725701	55725900	+	0	NA	intron (NM_001257390, intron 7 of 7)	intron (NM_001257390, intron 7 of 7)	1988	NM_001257401	967		NM_001780	ENSG00000135404	CD63	AD1|HOP-26|ME491|MLA1|OMA81H|Pltgp40|TSPAN30	CD63 molecule	protein-coding
191625	chr6	12290071	12290440	+	0	NA	promoter-TSS (NM_001955)	promoter-TSS (NM_001955)	-106	NM_001955	1906		NM_001955	ENSG00000078401	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
96575	chr17	40486021	40486500	+	0	NA	intron (NM_032865, intron 4 of 12)	intron (NM_032865, intron 4 of 12)	15363	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
113027	chr19	7932771	7932930	+	0	NA	exon (NM_006351, exon 8 of 13)	exon (NM_006351, exon 8 of 13)	-6715	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
61777	chr13	74972471	74972630	+	0	NA	Intergenic	Intergenic	267831	NR_027466	647288		NR_027466	ENSG00000214249	CTAGE11P	-	CTAGE family member 11, pseudogene	pseudo
148006	chr20	63044721	63044980	+	0	NA	intron (NR_033369, intron 1 of 5)	intron (NR_033369, intron 1 of 5)	6839	NR_033369	100144597		NR_033369	ENSG00000237119	LINC01056	-	long intergenic non-protein coding RNA 1056	ncRNA
147580	chr20	61253201	61253600	+	0	NA	intron (NM_001794, intron 1 of 15)	CpG	1139	NM_001794	1002		NM_001794	ENSG00000179242	CDH4	CAD4|R-CAD|RCAD	cadherin 4	protein-coding
102796	chr17	76387301	76387500	+	0	NA	exon (NM_182965, exon 6 of 6)	exon (NM_182965, exon 6 of 6)	2122	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
20380	chr1	198154401	198154600	+	0	NA	Intergenic	AluSz|SINE|Alu	-2498	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
38746	chr11	46968721	46968800	+	0	NA	intron (NM_001278222, intron 1 of 7)	AluSg|SINE|Alu	31999	NR_103472	79096		NM_024113	ENSG00000149179	CSTPP1	C11orf49	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	protein-coding
203908	chr7	1500201	1500600	+	0	NA	intron (NM_001080453, intron 3 of 47)	intron (NM_001080453, intron 3 of 47)	3989	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
16856	chr1	155740921	155741380	+	0	NA	Intergenic	AluJb|SINE|Alu	-4618	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
156138	chr22	40128451	40128650	+	0	NA	intron (NM_001024843, intron 3 of 23)	(TCACGGC)n|Simple_repeat|Simple_repeat	-49375	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
236000	chrX	54495351	54496250	+	0	NA	5' UTR (NM_004463, exon 1 of 18)	5' UTR (NM_004463, exon 1 of 18)	434	NM_004463	2245		NM_004463	ENSG00000102302	FGD1	AAS|FGDY|MRXS16|ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding
126961	chr2	36234251	36234350	+	0	NA	Intergenic	Intergenic	121270	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
218368	chr8	43143401	43143600	+	0	NA	intron (NM_001363228, intron 1 of 15)	MIRb|SINE|MIR	3036	NM_001363228	138050		NM_025070	ENSG00000165102	HGSNAT	HGNAT|MPS3C|RP73|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
157581	chr22	45981101	45982300	+	0	NA	Intergenic	AluSp|SINE|Alu	-4538	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
19171	chr1	171801401	171801700	+	0	NA	Intergenic	Intergenic	19890	NM_014955	51603		NM_014955	ENSG00000010165	METTL13	5630401D24Rik|CGI-01|DFNB26|DFNB26M|DFNM1|EEF1AKNMT|KIAA0859|feat	methyltransferase 13, eEF1A N-terminus and K55	protein-coding
52512	chr12	56048451	56048750	+	0	NA	Intergenic	AluSx1|SINE|Alu	6682	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
182306	chr5	58462601	58462900	+	0	NA	Intergenic	Intergenic	-2611	NM_001252226	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
144616	chr20	35840001	35840900	+	0	NA	intron (NM_016436, intron 2 of 17)	MLT1N2|LTR|ERVL-MaLR	68435	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
71786	chr15	21704601	21704800	+	0	NA	Intergenic	Intergenic	13607	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
194046	chr6	31846921	31847730	+	0	NA	Intergenic	Intergenic	10249	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
147669	chr20	62294451	62294750	+	0	NA	3' UTR (NM_001278649, exon 13 of 13)	3' UTR (NM_001278649, exon 13 of 13)	-8296	NM_001281437	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
184585	chr5	102862101	102862300	+	0	NA	intron (NM_001364582, intron 1 of 24)	intron (NM_001364582, intron 1 of 24)	-3623	NM_138821	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
51116	chr12	50082771	50083130	+	0	NA	non-coding (NR_046389, exon 13 of 13)	non-coding (NR_046389, exon 13 of 13)	-2392	NM_139071	6602		NM_003076	ENSG00000066117	SMARCD1	BAF60A|CRACD1|CSS11|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding
203658	chr7	991021	991280	+	0	NA	intron (NR_156697, intron 4 of 4)	intron (NR_156697, intron 4 of 4)	7969	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
70088	chr14	100168321	100168700	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8865	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
236281	chrX	66045971	66046130	+	0	NA	Intergenic	L2a|LINE|L2	-5925	NM_001184830	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
117487	chr19	19805901	19806100	+	0	NA	intron (NM_001145404, intron 2 of 2)	intron (NM_001145404, intron 2 of 2)	15750	NM_001099269	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
100467	chr17	61410551	61411900	+	0	NA	promoter-TSS (NR_160788)	promoter-TSS (NR_160788)	-526	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
230469	chr9	128211071	128211430	+	0	NA	intron (NM_001374269, intron 1 of 21)	intron (NM_001374269, intron 1 of 21)	-7028	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
81401	chr16	7008771	7009000	+	0	NA	intron (NM_001142334, intron 1 of 13)	(TCCC)n|Simple_repeat|Simple_repeat	235076	NM_001142334	54715		NM_018723	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding fox-1 homolog 1	protein-coding
105739	chr18	2736671	2736900	+	0	NA	intron (NM_015295, intron 25 of 47)	L1PA16|LINE|L1	81059	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
85409	chr16	50311201	50311950	+	0	NA	intron (NM_001114, intron 19 of 25)	intron (NM_001114, intron 19 of 25)	18959	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
235737	chrX	48934501	48935550	+	0	NA	intron (NM_001136157, intron 2 of 8)	intron (NM_001136157, intron 2 of 8)	-16001	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
81895	chr16	11715771	11715930	+	0	NA	intron (NM_001303447, intron 5 of 12)	intron (NM_001303447, intron 5 of 12)	27007	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
223095	chr8	143426401	143427130	+	0	NA	Intergenic	Intergenic	3967	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
94136	chr17	28317551	28317650	+	0	NA	Intergenic	Intergenic	-1600	NM_014573	27346		NM_014573	ENSG00000109084	TMEM97	MAC30|S2R|sigma2R	transmembrane protein 97	protein-coding
99827	chr17	55091471	55091630	+	0	NA	intron (NM_178509, intron 16 of 17)	Tigger4|DNA|TcMar-Tigger	-122765	NM_001162862	1353		NM_004375	ENSG00000166260	COX11	COX11P|MC4DN23	cytochrome c oxidase copper chaperone COX11	protein-coding
74239	chr15	56821771	56822000	+	0	NA	Intergenic	Intergenic	-87799	NM_001002843	54816		NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
124644	chr2	1995951	1996250	+	0	NA	intron (NM_001329845, intron 5 of 24)	intron (NM_001329845, intron 5 of 24)	-251585	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
209061	chr7	74772521	74772980	+	0	NA	Intergenic	(TTCA)n|Simple_repeat|Simple_repeat	-1212	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
146413	chr20	49513701	49513900	+	0	NA	intron (NM_000961, intron 7 of 9)	MLT1K|LTR|ERVL-MaLR	-31132	NM_004975	3745		NM_004975	ENSG00000158445	KCNB1	DEE26|DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
47051	chr12	543151	544650	+	0	NA	intron (NM_173593, intron 3 of 19)	intron (NM_173593, intron 3 of 19)	42586	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
111296	chr19	3578371	3579350	+	0	NA	3' UTR (NM_006339, exon 10 of 10)	3' UTR (NM_006339, exon 10 of 10)	5916	NM_006339	10362		NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
151216	chr21	45223731	45225430	+	0	NA	3' UTR (NM_015833, exon 12 of 12)	3' UTR (NM_015833, exon 12 of 12)	-9760	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
119560	chr19	40616001	40617150	+	0	NA	intron (NM_001042544, intron 22 of 32)	AluSz|SINE|Alu	15206	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
116763	chr19	18492121	18492850	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	29585	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
48724	chr12	10703951	10704380	+	0	NA	intron (NM_001145426, intron 5 of 8)	intron (NM_001145426, intron 5 of 8)	19158	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
53347	chr12	64642351	64642530	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSx1|SINE|Alu	-19835	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
81860	chr16	11636171	11636530	+	0	NA	Intergenic	LTR9A1|LTR|ERV1	-32105	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
36370	chr11	3952551	3953530	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	96978	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
78809	chr15	99526371	99526530	+	0	NA	Intergenic	L1MEf|LINE|L1	-38967	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
213224	chr7	133477921	133478180	+	0	NA	intron (NM_021807, intron 8 of 17)	intron (NM_021807, intron 8 of 17)	187169	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
195854	chr6	41469921	41470780	+	0	NA	Intergenic	CpG	-32094	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
114941	chr19	13978401	13979800	+	0	NA	intron (NM_002918, intron 7 of 20)	intron (NM_002918, intron 7 of 20)	-25708	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
158286	chr22	50355471	50355830	+	0	NA	intron (NM_001351641, intron 1 of 23)	AluY|SINE|Alu	12323	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
126855	chr2	31932401	31932900	+	0	NA	intron (NR_163998, intron 3 of 8)	AluJb|SINE|Alu	78114	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
119689	chr19	41089771	41090300	+	0	NA	intron (NM_000766, intron 2 of 8)	CpG	1584	NM_000766	1553		NM_000766	ENSG00000197838	CYP2A13	CPAD|CYP2A|CYPIIA13	cytochrome P450 family 2 subfamily A member 13	protein-coding
74988	chr15	63905651	63906350	+	0	NA	Intergenic	Intergenic	-22274	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
133846	chr2	128273151	128273950	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	45318	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
67194	chr14	68897721	68897980	+	0	NA	intron (NM_001130004, intron 8 of 21)	intron (NM_001130004, intron 8 of 21)	81452	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
135105	chr2	157396801	157397530	+	0	NA	Intergenic	L1PA5|LINE|L1	-16656	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
227450	chr9	90760021	90760980	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-41100	NM_001174168	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
22969	chr1	226070621	226071230	+	0	NA	intron (NR_002315, intron 3 of 3)	intron (NR_002315, intron 3 of 3)	8198	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
232465	chr9	136198251	136198350	+	0	NA	intron (NM_178138, intron 5 of 5)	intron (NM_178138, intron 5 of 5)	3374	NM_001363746	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
39165	chr11	57337551	57337850	+	0	NA	promoter-TSS (NM_002559)	promoter-TSS (NM_002559)	-652	NM_002559	5024		NM_002559	ENSG00000109991	P2RX3	P2X3	purinergic receptor P2X 3	protein-coding
201436	chr6	147222401	147222800	+	0	NA	intron (NM_139244, intron 2 of 25)	L1MC1|LINE|L1	-17986	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
33211	chr10	113991401	113991600	+	0	NA	Intergenic	Intergenic	-52366	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
93312	chr17	18174571	18175350	+	0	NA	intron (NM_016239, intron 64 of 64)	intron (NM_016239, intron 64 of 64)	-8868	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
189411	chr5	172777071	172778650	+	0	NA	Intergenic	Intergenic	-6665	NM_004417	1843		NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
111268	chr19	3541301	3542100	+	0	NA	intron (NM_001135580, intron 1 of 3)	intron (NM_001135580, intron 1 of 3)	2543	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
21147	chr1	203680651	203681030	+	0	NA	intron (NM_001365784, intron 1 of 20)	L2b|LINE|L2	-48741	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
125228	chr2	10374401	10374800	+	0	NA	intron (NM_001258359, intron 1 of 4)	intron (NM_001258359, intron 1 of 4)	5836	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
62869	chr13	110593501	110593800	+	0	NA	Intergenic	Intergenic	-21810	NR_040104	55739		NM_018210	ENSG00000213995	NAXD	CARKD|LP3298|PEBEL2	NAD(P)HX dehydratase	protein-coding
73421	chr15	43102671	43103550	+	0	NA	intron (NM_174916, intron 1 of 46)	AluSz6|SINE|Alu	2928	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
105865	chr18	3096951	3097500	+	0	NA	intron (NM_019856, intron 24 of 36)	intron (NM_019856, intron 24 of 36)	-84081	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
39190	chr11	57465571	57465950	+	0	NA	intron (NM_178570, intron 1 of 2)	intron (NM_178570, intron 1 of 2)	5232	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
190071	chr5	177613251	177613550	+	0	NA	Intergenic	AluSq2|SINE|Alu	13268	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
55623	chr12	107026301	107026600	+	0	NA	intron (NM_004075, intron 1 of 12)	AluSx|SINE|Alu	-39284	NM_025198	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
40205	chr11	63349771	63349930	+	0	NA	Intergenic	L1PA3|LINE|L1	-19935	NM_080866	114571		NM_080866	ENSG00000149742	SLC22A9	HOAT4|OAT4|OAT7|UST3H|ust3	solute carrier family 22 member 9	protein-coding
93588	chr17	19122671	19122830	+	0	NA	Intergenic	L1M4b|LINE|L1	-4839	NM_001353418	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
14822	chr1	146297701	146298180	+	0	NA	promoter-TSS (NM_001355407)	promoter-TSS (NM_001355407)	-51	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
149838	chr21	35036621	35037360	+	0	NA	TTS (NR_026812)	TTS (NR_026812)	2436	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
3013	chr1	12078971	12079130	+	0	NA	intron (NM_001281430, intron 1 of 13)	intron (NM_001281430, intron 1 of 13)	15673	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
14993	chr1	148079001	148080100	+	0	NA	intron (NR_146087, intron 1 of 7)	LTR12C|LTR|ERV1	30248	NR_146087	728920		NR_146087		PDE4DIPP1	PDE4DIP1	PDE4DIP pseudogene 1	pseudo
58606	chr12	132481721	132482200	+	0	NA	Intergenic	Ricksha_c|DNA|MULE-MuDR	-8191	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171462	chr3	196357621	196358450	+	0	NA	intron (NM_015562, intron 10 of 10)	AluJb|SINE|Alu	-19615	NR_037950	100534611		NR_037950		TM4SF19-DYNLT2B	TM4SF19-TCTEX1D2	TM4SF19-DYNLT2B readthrough (NMD candidate)	ncRNA
234338	chrX	14899671	14899930	+	0	NA	intron (NM_152581, intron 5 of 14)	MamSINE1|SINE|tRNA-RTE	14509	NM_001177475	158747		NM_152581	ENSG00000130150	MOSPD2	-	motile sperm domain containing 2	protein-coding
23316	chr1	228088751	228088850	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	5650	NM_001024227	375		NM_001658	ENSG00000143761	ARF1	PVNH8	ADP ribosylation factor 1	protein-coding
177544	chr4	118981821	118982150	+	0	NA	intron (NM_133477, intron 1 of 4)	intron (NM_133477, intron 1 of 4)	93131	NM_133477	171024		NM_133477	ENSG00000172403	SYNPO2	SYISL	synaptopodin 2	protein-coding
187781	chr5	146184071	146184230	+	0	NA	Intergenic	AluSg|SINE|Alu	-1363	NM_016460	51520		NM_016460	ENSG00000133706	LARS1	HSPC192|ILFS1|LARS|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|cLRS|hr025Cl	leucyl-tRNA synthetase 1	protein-coding
135564	chr2	165486101	165486300	+	0	NA	intron (NM_001172173, intron 1 of 6)	L1PA2|LINE|L1	16502	NM_001172173	80034		NM_024969	ENSG00000178662	CSRNP3	FAM130A2|MBU1|PPP1R73|TAIP-2|TAIP2	cysteine and serine rich nuclear protein 3	protein-coding
102768	chr17	76288471	76288630	+	0	NA	intron (NM_032134, intron 5 of 18)	AluSx|SINE|Alu	19130	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
154785	chr22	36757321	36757880	+	0	NA	TTS (NM_001177701)	TTS (NM_001177701)	18519	NM_006860	11020		NM_006860	ENSG00000100360	IFT27	BBS19|CFAP156|FAP156|RABL4|RAYL	intraflagellar transport 27	protein-coding
203371	chr6	170452701	170453100	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	100407	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
63004	chr13	112585971	112586130	+	0	NA	intron (NM_001286278, intron 1 of 20)	AluY|SINE|Alu	2103	NM_006322	10426		NM_006322	ENSG00000126216	TUBGCP3	104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex component 3	protein-coding
232572	chr9	136370651	136371130	+	0	NA	exon (NM_052814, exon 4 of 13)	exon (NM_052814, exon 4 of 13)	2779	NM_052814	64170		NM_022352	ENSG00000187796	CARD9	CANDF2|IMD103|hCARD9	caspase recruitment domain family member 9	protein-coding
105601	chr18	657251	659050	+	0	NA	exon (NM_001012716, exon 1 of 2)	exon (NM_001012716, exon 1 of 2)	141	NM_001012716	494514		NM_001012716		TYMSOS	C18orf56	TYMS opposite strand RNA	ncRNA
113249	chr19	8497871	8498880	+	0	NA	intron (NM_032152, intron 2 of 9)	intron (NM_032152, intron 2 of 9)	4265	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
92547	chr17	8952071	8952480	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	13432	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
75618	chr15	67132601	67133230	+	0	NA	intron (NM_001145102, intron 1 of 8)	L3|LINE|CR1	-5106	NM_001145103	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
136311	chr2	174906451	174906550	+	0	NA	intron (NM_001371514, intron 5 of 12)	L1MB8|LINE|L1	-58945	NM_001206602	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
142852	chr20	17614421	17614850	+	0	NA	intron (NM_004587, intron 24 of 24)	CpG	44560	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
16391	chr1	154410121	154410780	+	0	NA	intron (NM_001206866, intron 1 of 6)	AluJb|SINE|Alu	-3886	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
144134	chr20	34015801	34016380	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-21723	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
110976	chr19	2969251	2969550	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-8164	NM_001143986	79816		NM_024760	ENSG00000104953	TLE6	GRG6|OZEMA15|PREMBL	TLE family member 6, subcortical maternal complex member	protein-coding
163818	chr3	52441851	52442400	+	0	NA	intron (NM_020163, intron 4 of 15)	intron (NM_020163, intron 4 of 15)	2978	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
189597	chr5	175663351	175663650	+	0	NA	intron (NM_001131055, intron 1 of 2)	intron (NM_001131055, intron 1 of 2)	5429	NM_001367711	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
218396	chr8	47237301	47237500	+	0	NA	Intergenic	Intergenic	-23478	NM_001352957	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
171575	chr3	196999271	196999580	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-3481	NR_038285	100507057		NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1|PLANE	MELTF antisense RNA 1	ncRNA
48212	chr12	8099201	8099600	+	0	NA	Intergenic	L1M1|LINE|L1	17126	NM_015509	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
224629	chr9	20558271	20558950	+	0	NA	intron (NM_001286691, intron 2 of 10)	MER5A|DNA|hAT-Charlie	-56268	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
180214	chr5	1515001	1515690	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	-4489	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
34759	chr11	191631	192500	+	0	NA	Intergenic	Intergenic	-1013	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
201897	chr6	151240021	151240480	+	0	NA	intron (NM_005100, intron 1 of 4)	CpG	283	NM_005100	9590		NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
131899	chr2	98762771	98762930	+	0	NA	intron (NR_126337, intron 3 of 3)	intron (NR_126337, intron 3 of 3)	9048	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
196882	chr6	52213271	52213430	+	0	NA	Intergenic	Intergenic	26975	NM_002190	3605		NM_002190	ENSG00000112115	IL17A	CTLA-8|CTLA8|IL-17|IL-17A|IL17|ILA17	interleukin 17A	protein-coding
105951	chr18	3741051	3741350	+	0	NA	intron (NM_001242763, intron 3 of 10)	(ACC)n|Simple_repeat|Simple_repeat	104158	NM_001242765	9229		NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding
32682	chr10	103919701	103919900	+	0	NA	Intergenic	Intergenic	-1616	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
10093	chr1	58903171	58904400	+	0	NA	Intergenic	CpG	-116691	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
8453	chr1	40696071	40696530	+	0	NA	intron (NM_001142590, intron 2 of 14)	AluSx3|SINE|Alu	-4039	NR_024567	100130557		NR_024567		NFYC-AS1	0808y08y	NFYC antisense RNA 1	ncRNA
100838	chr17	64120071	64120530	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	9844	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
124258	chr19	57681601	57682400	+	0	NA	promoter-TSS (NR_073102)	promoter-TSS (NR_073102)	23	NM_138347	90233		NM_138347	ENSG00000204519	ZNF551	-	zinc finger protein 551	protein-coding
157233	chr22	43280451	43281580	+	0	NA	intron (NR_134582, intron 1 of 1)	intron (NR_134582, intron 1 of 1)	5073	NR_134582	101927447		NR_134582	ENSG00000203527	SCUBE1-AS1	-	SCUBE1 antisense RNA 1	ncRNA
83438	chr16	27296121	27296600	+	0	NA	Intergenic	L1MB8|LINE|L1	-17614	NM_001257406	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
103047	chr17	77142321	77142800	+	0	NA	intron (NM_001143999, intron 1 of 16)	AluJb|SINE|Alu	1591	NM_001143998	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
228270	chr9	98060671	98061230	+	0	NA	exon (NM_018946, exon 2 of 6)	exon (NM_018946, exon 2 of 6)	4218	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
233049	chr9	137054851	137054950	+	0	NA	promoter-TSS (NM_001246)	promoter-TSS (NM_001246)	-839	NM_203468	954		NM_001246	ENSG00000054179	ENTPD2	CD39L1|NTPDase-2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding
187063	chr5	140116601	140117800	+	0	NA	3' UTR (NM_005859, exon 1 of 1)	3' UTR (NM_005859, exon 1 of 1)	3091	NM_005859	5813		NM_005859	ENSG00000185129	PURA	MRD31|NEDRIHF|PUR-ALPHA|PUR1|PURALPHA	purine rich element binding protein A	protein-coding
155461	chr22	38480601	38481300	+	0	NA	intron (NM_006855, intron 3 of 4)	AluJr|SINE|Alu	12854	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
8856	chr1	43388321	43388600	+	0	NA	5' UTR (NM_001001653, exon 2 of 7)	5' UTR (NM_001001653, exon 2 of 7)	1340	NM_201542	112950		NM_052877	ENSG00000159479	MED8	ARC32	mediator complex subunit 8	protein-coding
59893	chr13	30737221	30737700	+	0	NA	intron (NM_001629, intron 1 of 4)	intron (NM_001629, intron 1 of 4)	1917	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
145791	chr20	45383651	45383750	+	0	NA	intron (NR_003189, intron 3 of 5)	AluY|SINE|Alu	-5375	NM_014477	27296		NM_014477	ENSG00000124251	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
125002	chr2	9487521	9487780	+	0	NA	TTS (NM_003183)	TTS (NM_003183)	12595	NM_001320858	285148		NM_001039613	ENSG00000134330	IAH1	-	isoamyl acetate hydrolyzing esterase 1 (putative)	protein-coding
123738	chr19	55062371	55063600	+	0	NA	non-coding (NR_027381, exon 1 of 8).5	non-coding (NR_027381, exon 1 of 8).5	163	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
47763	chr12	6545451	6546030	+	0	NA	intron (NM_001039670, intron 8 of 9)	MER44C|DNA|TcMar-Tigger	10302	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
59922	chr13	31131501	31132650	+	0	NA	Intergenic	Intergenic	29829	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
181181	chr5	39100851	39101630	+	0	NA	Intergenic	LTR33|LTR|ERVL	-26841	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
211595	chr7	105808071	105808230	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	68435	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
178376	chr4	146511401	146511600	+	0	NA	intron (NR_133924, intron 2 of 9)	intron (NR_133924, intron 2 of 9)	10440	NM_001317816	84068		NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7|SSASKS	solute carrier family 10 member 7	protein-coding
155790	chr22	39296721	39296980	+	0	NA	Intergenic	Intergenic	17061	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
115710	chr19	16215201	16215800	+	0	NA	intron (NM_001130524, intron 6 of 12)	L1ME1|LINE|L1	17589	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
145460	chr20	43691771	43692180	+	0	NA	intron (NM_001278610, intron 4 of 12)	intron (NM_001278610, intron 4 of 12)	24861	NM_002466	4605		NM_002466	ENSG00000101057	MYBL2	B-MYB|BMYB	MYB proto-oncogene like 2	protein-coding
38558	chr11	45925401	45926580	+	0	NA	intron (NM_001300722, intron 7 of 14)	intron (NM_001300722, intron 7 of 14)	3334	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
233192	chr9	137205051	137206600	+	0	NA	promoter-TSS (NM_053045)	promoter-TSS (NM_053045)	125	NM_001144028	27158		NM_014434	ENSG00000188566	NDOR1	CIAE1|NR1|bA350O14.9	NADPH dependent diflavin oxidoreductase 1	protein-coding
188111	chr5	150378371	150378530	+	0	NA	intron (NM_001371623, intron 14 of 26)	MLT1J|LTR|ERVL-MaLR	20753	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
99745	chr17	50942201	50942400	+	0	NA	Intergenic	Intergenic	-74322	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
12703	chr1	109491571	109491730	+	0	NA	exon (NM_153340, exon 10 of 11)	exon (NM_153340, exon 10 of 11)	-2386	NM_001134402	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
4983	chr1	24203271	24203630	+	0	NA	intron (NR_027087, intron 2 of 2)	intron (NR_027087, intron 2 of 2)	3210	NR_027087	284632		NR_027087	ENSG00000230023	LINC02800	-	long intergenic non-protein coding RNA 2800	ncRNA
158813	chr3	9730721	9733450	+	0	NA	non-coding (NR_160918, exon 1 of 15)	non-coding (NR_160918, exon 1 of 15)	335	NM_004634	7862		NM_004634	ENSG00000156983	BRPF1	BR140|IDDDFP	bromodomain and PHD finger containing 1	protein-coding
118893	chr19	38692221	38692750	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	44836	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
68607	chr14	89614421	89614980	+	0	NA	intron (NM_001085471, intron 1 of 6)	Charlie15a|DNA|hAT-Charlie	4465	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
9448	chr1	50109671	50110200	+	0	NA	non-coding (NR_136725, exon 1 of 5)	non-coding (NR_136725, exon 1 of 5)	102	NM_001324215	1996		NM_021952	ENSG00000162374	ELAVL4	HUD|PNEM	ELAV like RNA binding protein 4	protein-coding
39664	chr11	61683321	61683600	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	3069	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
34601	chr10	133266421	133267030	+	0	NA	intron (NM_001109, intron 21 of 22)	intron (NM_001109, intron 21 of 22)	10143	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
225909	chr9	40110151	40110850	+	0	NA	Intergenic	GSATII|Satellite|centr	-213071	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
231068	chr9	129645051	129645580	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-3146	NM_001202403	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
62209	chr13	98466671	98467100	+	0	NA	intron (NM_003576, intron 5 of 10)	intron (NM_003576, intron 5 of 10)	55240	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
17149	chr1	156196171	156196880	+	0	NA	intron (NR_104408, intron 2 of 3)	intron (NR_104408, intron 2 of 3)	2421	NM_001286184	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
133942	chr2	130555821	130556790	+	0	NA	Intergenic	L1MB4|LINE|L1	-6390	NR_033930	646743		NR_033930	ENSG00000290610	PRSS40B	-	serine protease 40B (pseudogene)	pseudo
170146	chr3	183469101	183469780	+	0	NA	Intergenic	Intergenic	15626	NR_145763	109617007		NR_145763	ENSG00000199363	SNORA63E	-	small nucleolar RNA, H/ACA box 63E	snoRNA
40890	chr11	65124921	65125300	+	0	NA	intron (NM_004927, intron 2 of 3)	MIRb|SINE|MIR	2789	NR_037568	740		NM_004927	ENSG00000149792	MRPL49	C11orf4|L49mt|MRP-L49|NOF|NOF1|mL49	mitochondrial ribosomal protein L49	protein-coding
11735	chr1	91896171	91896630	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	9602	NM_001195684	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
236533	chrX	72122621	72122880	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	9165	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
41336	chr11	65921001	65921600	+	0	NA	intron (NM_006442, intron 6 of 6)	intron (NM_006442, intron 6 of 6)	1874	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
225659	chr9	36442021	36442380	+	0	NA	Intergenic	Intergenic	-41002	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
33410	chr10	118595771	118596350	+	0	NA	promoter-TSS (NM_004248)	promoter-TSS (NM_004248)	-412	NM_004248	2834		NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
161676	chr3	43362101	43362300	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-10238	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
203244	chr6	169174951	169175050	+	0	NA	TTS (NR_125863)	TTS (NR_125863)	7740	NR_125863	101929504		NR_125863	ENSG00000261039	LINC02544	-	long intergenic non-protein coding RNA 2544	ncRNA
104921	chr17	81914151	81916200	+	0	NA	intron (NM_016538, intron 5 of 9)	intron (NM_016538, intron 5 of 9)	3001	NM_016538	51547		NM_016538	ENSG00000187531	SIRT7	SIR2L7	sirtuin 7	protein-coding
151883	chr22	18846401	18847000	+	0	NA	Intergenic	Intergenic	-3418	NR_135922	102725072		NR_135922	ENSG00000293159	POM121L15P	-	POM121 transmembrane nucleoporin like 15, pseudogene	pseudo
73220	chr15	41617471	41617830	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-42762	NM_001164273	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
160573	chr3	30698621	30699080	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	92249	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
115567	chr19	15730621	15730880	+	0	NA	Intergenic	L1MB8|LINE|L1	2726	NM_013939	26538		NM_013939	ENSG00000171942	OR10H2	-	olfactory receptor family 10 subfamily H member 2	protein-coding
121527	chr19	47228101	47228900	+	0	NA	intron (NM_001127240, intron 1 of 3)	intron (NM_001127240, intron 1 of 3)	-1481	NR_036159	100422832		NR_036159	ENSG00000284411	MIR3191	mir-3191	microRNA 3191	ncRNA
40865	chr11	65088821	65089080	+	0	NA	TTS (NM_006782)	TTS (NM_006782)	160	NM_001242631	100130348		NM_001242631	ENSG00000187066	TMEM262	-	transmembrane protein 262	protein-coding
42453	chr11	69338951	69339250	+	0	NA	Intergenic	Intergenic	44945	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
150607	chr21	43363751	43363850	+	0	NA	Intergenic	Intergenic	-1451	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
231096	chr9	129799901	129800730	+	0	NA	Intergenic	AluSg|SINE|Alu	-2828	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
96472	chr17	40246901	40247800	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSz|SINE|Alu	28046	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
87035	chr16	68278871	68279230	+	0	NA	intron (NM_001076785, intron 4 of 11)	intron (NM_001076785, intron 4 of 11)	14524	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
127874	chr2	45889101	45889730	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	237740	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
229662	chr9	124346471	124347380	+	0	NA	intron (NM_001166169, intron 8 of 9)	intron (NM_001166169, intron 8 of 9)	-6548	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
63346	chr13	114027021	114027430	+	0	NA	intron (NM_001320822, intron 7 of 23).2	intron (NM_001320822, intron 7 of 23).2	50730	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
67660	chr14	73109571	73110130	+	0	NA	intron (NM_021239, intron 14 of 18)	AluSx|SINE|Alu	-26657	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
209783	chr7	87564271	87564450	+	0	NA	intron (NM_001348946, intron 7 of 27)	L1MDb|LINE|L1	36524	NM_001348946	5243		NM_000927	ENSG00000085563	ABCB1	ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1|p-170	ATP binding cassette subfamily B member 1	protein-coding
206580	chr7	35690421	35690980	+	0	NA	intron (NM_022373, intron 2 of 8)	AluSq2|SINE|Alu	4435	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
116081	chr19	17244751	17245050	+	0	NA	intron (NM_005234, intron 1 of 3)	CpG	442	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
150957	chr21	44314301	44315100	+	0	NA	intron (NM_001002021, intron 10 of 24)	intron (NM_001002021, intron 10 of 24)	14647	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
98166	chr17	46061571	46062400	+	0	NA	intron (NM_015443, intron 6 of 14).2	AluSx1|SINE|Alu	62735	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
81200	chr16	4491971	4492330	+	0	NA	intron (NM_001286269, intron 2 of 6)	AluJr|SINE|Alu	-3669	NM_001286270	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
72667	chr15	38536401	38537080	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	28074	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
215633	chr8	150071	150450	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	16764	NM_001005504	441308		NM_001005504	ENSG00000176269	OR4F21	OR4F21P	olfactory receptor family 4 subfamily F member 21	protein-coding
97082	chr17	42399871	42400280	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-11633	NM_001384989	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
54978	chr12	96326521	96327200	+	0	NA	intron (NM_002595, intron 2 of 16)	L2a|LINE|L2	71362	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
52415	chr12	55772021	55772280	+	0	NA	intron (NM_033082, intron 9 of 10)	intron (NM_033082, intron 9 of 10)	29028	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
133024	chr2	111834451	111834750	+	0	NA	intron (NM_022662, intron 19 of 47)	intron (NM_022662, intron 19 of 47)	49593	NM_022662	64682		NM_022662	ENSG00000153107	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
160240	chr3	23972771	23972930	+	0	NA	intron (NR_110524, intron 8 of 8)	intron (NR_110524, intron 8 of 8)	-26288	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
199128	chr6	111704421	111704880	+	0	NA	intron (NM_001370529, intron 4 of 11)	AluSx1|SINE|Alu	54481	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
121845	chr19	48194351	48195250	+	0	NA	exon (NM_199341, exon 4 of 4)	exon (NM_199341, exon 4 of 4)	24120	NM_199341	374920		NM_199341	ENSG00000185453	ZSWIM9	C19orf68	zinc finger SWIM-type containing 9	protein-coding
30486	chr10	79264351	79264650	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-82969	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
121370	chr19	46854851	46855230	+	0	NA	Intergenic	AluSz|SINE|Alu	-4194	NM_001301078	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
139714	chr2	227783201	227783780	+	0	NA	Intergenic	Intergenic	-30352	NM_001130046	6364		NM_004591	ENSG00000115009	CCL20	CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38	C-C motif chemokine ligand 20	protein-coding
67695	chr14	73241801	73242000	+	0	NA	intron (NM_173462, intron 2 of 25)	intron (NM_173462, intron 2 of 25)	2127	NM_001365907	89932		NM_173462	ENSG00000100767	PAPLN	PPN	papilin, proteoglycan like sulfated glycoprotein	protein-coding
148167	chr20	63529071	63529230	+	0	NA	3' UTR (NM_001256358, exon 7 of 7)	3' UTR (NM_001256358, exon 7 of 7)	8220	NM_001256358	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
206669	chr7	36363951	36364930	+	0	NA	intron (NM_001100425, intron 2 of 6)	intron (NM_001100425, intron 2 of 6)	2800	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
136667	chr2	180977271	180977500	+	0	NA	Intergenic	Intergenic	-3000	NM_001278555	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
173407	chr4	8110601	8110800	+	0	NA	intron (NM_001130086, intron 1 of 17)	intron (NM_001130086, intron 1 of 17)	-38712	NM_001286688	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
78269	chr15	90854071	90855000	+	0	NA	Intergenic	Intergenic	-14053	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
26476	chr10	17668451	17668550	+	0	NA	intron (NM_001324287, intron 2 of 11)	L1MC2|LINE|L1	24349	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
35578	chr11	1692851	1693600	+	0	NA	Intergenic	Intergenic	-3970	NM_001012416	440023		NM_001012416	ENSG00000205864	KRTAP5-6	KRTAP5.6	keratin associated protein 5-6	protein-coding
116200	chr19	17483071	17483430	+	0	NA	intron (NM_198580, intron 1 of 11)	intron (NM_198580, intron 1 of 11)	12726	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
94403	chr17	28979221	28980650	+	0	NA	intron (NM_178860, intron 2 of 16)	intron (NM_178860, intron 2 of 16)	26098	NM_178860	124925		NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
61117	chr13	48494501	48495430	+	0	NA	intron (NR_147985, intron 11 of 11)	intron (NR_147985, intron 11 of 11)	38115	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
110872	chr19	2627221	2627500	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-3355	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
185590	chr5	131398671	131401180	+	0	NA	Intergenic	Intergenic	135872	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
209684	chr7	80310071	80310230	+	0	NA	Intergenic	Intergenic	64289	NR_110075	101927269		NR_110075		LOC101927269	-	uncharacterized LOC101927269	ncRNA
1278	chr1	2320851	2321750	+	0	NA	TTS (NM_024848)	TTS (NM_024848)	31361	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
233227	chr9	137238521	137239230	+	0	NA	Intergenic	Intergenic	-2412	NM_006088	10383		NM_006088	ENSG00000188229	TUBB4B	Beta2|LCAEOD|TUBB2|TUBB2C	tubulin beta 4B class IVb	protein-coding
27273	chr10	30047801	30048480	+	0	NA	intron (NM_001350021, intron 1 of 4)	intron (NM_001350021, intron 1 of 4)	11446	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
103229	chr17	77492821	77493080	+	0	NA	intron (NM_001293697, intron 7 of 9)	intron (NM_001293697, intron 7 of 9)	17315	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
174171	chr4	36284071	36284230	+	0	NA	non-coding (NR_160267, exon 2 of 10)	non-coding (NR_160267, exon 2 of 10)	2534	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
196986	chr6	53240821	53241200	+	0	NA	Intergenic	MER74A|LTR|ERVL	-35983	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
233343	chr9	137447671	137448030	+	0	NA	3' UTR (NM_001178064, exon 15 of 15)	3' UTR (NM_001178064, exon 15 of 15)	2236	NR_106964	102466223		NR_106964	ENSG00000284317	MIR7114	hsa-mir-7114	microRNA 7114	ncRNA
187369	chr5	141845471	141846100	+	0	NA	Intergenic	Intergenic	20417	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
228543	chr9	101449151	101449600	+	0	NA	Intergenic	CpG	-13601	NM_000035	229		NM_000035	ENSG00000136872	ALDOB	ALDB|ALDO2	aldolase, fructose-bisphosphate B	protein-coding
142606	chr20	5591551	5591850	+	0	NA	intron (NM_019593, intron 4 of 19)	intron (NM_019593, intron 4 of 19)	19306	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
184316	chr5	96916371	96916530	+	0	NA	intron (NM_001130140, intron 18 of 18)	intron (NM_001130140, intron 18 of 18)	-19630	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
29458	chr10	70477251	70478300	+	0	NA	promoter-TSS (NM_014431)	promoter-TSS (NM_014431)	-992	NM_014431	27143		NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	phosphatase domain containing paladin 1	protein-coding
207413	chr7	44379521	44379980	+	0	NA	3' UTR (NM_015332, exon 6 of 6)	3' UTR (NM_015332, exon 6 of 6)	-54119	NM_172079	816		NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB|CaMKIIbeta|MRD54	calcium/calmodulin dependent protein kinase II beta	protein-coding
72378	chr15	31367331	31368650	+	0	NA	intron (NM_001302461, intron 1 of 1).3	MLT1C|LTR|ERVL-MaLR	41155	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
27086	chr10	27290851	27290950	+	0	NA	intron (NR_138082, intron 4 of 4)	intron (NR_138082, intron 4 of 4)	32138	NR_138082	101060171		NR_138082		ODAD2P1	ARMC4P1	outer dynein arm docking complex subunit 2 pseudogene 1	pseudo
139613	chr2	225039451	225039900	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	2793	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
51776	chr12	53335171	53335500	+	0	NA	intron (NM_001300837, intron 2 of 2)	(TCCTCAC)n|Simple_repeat|Simple_repeat	441	NM_152860	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
194824	chr6	34315501	34316230	+	0	NA	intron (NM_006703, intron 2 of 4)	intron (NM_006703, intron 2 of 4)	-66757	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
28162	chr10	43606171	43607250	+	0	NA	intron (NM_001318140, intron 1 of 4)	CpG	272	NM_145312	220992		NM_145312	ENSG00000198298	ZNF485	-	zinc finger protein 485	protein-coding
95697	chr17	38447671	38447900	+	0	NA	intron (NM_001199417, intron 1 of 23).2	intron (NM_001199417, intron 1 of 23).2	19321	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
54741	chr12	93771921	93772450	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	-34362	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
50078	chr12	44827501	44828830	+	0	NA	intron (NM_001145108, intron 2 of 19)	L1MA3|LINE|L1	47496	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
41907	chr11	67275451	67275550	+	0	NA	intron (NM_001619, intron 1 of 20)	intron (NM_001619, intron 1 of 20)	9027	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
215734	chr8	1784621	1785230	+	0	NA	3' UTR (NM_018941, exon 3 of 3)	3' UTR (NM_018941, exon 3 of 3)	-16200	NR_037445	100500912		NR_037445	ENSG00000283858	MIR3674	-	microRNA 3674	ncRNA
168592	chr3	149120051	149120780	+	0	NA	Intergenic	Intergenic	-9223	NM_001308258	84343		NM_032383	ENSG00000163755	HPS3	BLOC2S1|SUTAL	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding
142956	chr20	19522251	19522550	+	0	NA	intron (NM_020689, intron 3 of 16)	intron (NM_020689, intron 3 of 16)	-235858	NM_001378238	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
22070	chr1	211335371	211336600	+	0	NA	intron (NM_001319207, intron 1 of 10)	L2|LINE|L2	9152	NM_001033910	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
19711	chr1	181093251	181093730	+	0	NA	TTS (NM_016545)	TTS (NM_016545)	4790	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
137484	chr2	197136721	197137200	+	0	NA	intron (NM_153697, intron 3 of 9)	intron (NM_153697, intron 3 of 9)	-61031	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
229916	chr9	126617651	126617750	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	3772	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
45172	chr11	117228071	117228750	+	0	NA	intron (NM_004716, intron 3 of 16)	intron (NM_004716, intron 3 of 16)	3663	NM_004716	9159		NM_004716	ENSG00000160613	PCSK7	LPC|PC7|PC8|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding
29810	chr10	72303351	72303450	+	0	NA	Intergenic	Charlie29a|DNA|hAT-Charlie	29476	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
105615	chr18	741851	742230	+	0	NA	intron (NM_005433, intron 8 of 11)	intron (NM_005433, intron 8 of 11)	-29376	NR_148711	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
7071	chr1	32016551	32017550	+	0	NA	intron (NR_073498, intron 1 of 8)	AluSz|SINE|Alu	3182	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
161649	chr3	43318871	43319030	+	0	NA	intron (NM_017719, intron 3 of 6)	AluSx|SINE|Alu	32410	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
27753	chr10	35199621	35199880	+	0	NA	intron (NM_001352446, intron 1 of 2)	intron (NM_001352446, intron 1 of 2)	3848	NM_182724	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
5018	chr1	24488051	24488550	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-14044	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
149194	chr21	23949471	23949830	+	0	NA	Intergenic	Intergenic	371727	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
130242	chr2	84839771	84840580	+	0	NA	intron (NM_001080824, intron 2 of 5)	intron (NM_001080824, intron 2 of 5)	40909	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
23298	chr1	228067751	228068050	+	0	NA	Intergenic	Intergenic	8650	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
136305	chr2	174833401	174833930	+	0	NA	intron (NM_001025201, intron 7 of 12)	L1MEc|LINE|L1	13890	NM_001206602	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
86567	chr16	67204871	67205030	+	0	NA	TTS (NM_024712)	TTS (NM_024712)	-2555	NR_029887	442901		NR_029887	ENSG00000207948	MIR328	MIRN328|hsa-mir-328|mir-328	microRNA 328	ncRNA
184537	chr5	102453801	102454000	+	0	NA	intron (NM_173488, intron 6 of 13)	L1M4a2|LINE|L1	45101	NM_001308014	133482		NM_173488	ENSG00000205359	SLCO6A1	CT48|GST|OATP-I|OATP6A1|OATPY	solute carrier organic anion transporter family member 6A1	protein-coding
232888	chr9	136841071	136841600	+	0	NA	TTS (NM_001173988)	TTS (NM_001173988)	-1143	NM_001080482	389813		NM_001080482	ENSG00000232434	AJM1	C9orf172|ajm-1	apical junction component 1 homolog	protein-coding
170179	chr3	183667201	183667600	+	0	NA	intron (NM_001349418, intron 7 of 9)	MER1B|DNA|hAT-Charlie	-30397	NM_001351371	55689		NM_018023	ENSG00000163872	YEATS2	FAME4	YEATS domain containing 2	protein-coding
200944	chr6	139169651	139170150	+	0	NA	intron (NM_016217, intron 2 of 3)	MLT1H|LTR|ERVL-MaLR	34820	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
150365	chr21	42216501	42216700	+	0	NA	intron (NM_207629, intron 1 of 14)	intron (NM_207629, intron 1 of 14)	523	NM_207629	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
191740	chr6	13747421	13748080	+	0	NA	Intergenic	Intergenic	-35915	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
37914	chr11	34154101	34154380	+	0	NA	intron (NM_145804, intron 16 of 16)	intron (NM_145804, intron 16 of 16)	48611	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
51256	chr12	51028071	51028600	+	0	NA	promoter-TSS (NM_001379446)	promoter-TSS (NM_001379446)	-93	NM_001379446	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
65311	chr14	50092821	50093080	+	0	NA	intron (NR_131171, intron 1 of 8)	AluSz6|SINE|Alu	12093	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
10572	chr1	67294951	67295280	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	-12249	NR_047584	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
61319	chr13	50378351	50378650	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	148949	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
182233	chr5	56949801	56950000	+	0	NA	intron (NM_001297598, intron 2 of 12)	intron (NM_001297598, intron 2 of 12)	2223	NM_001297599	166968		NM_152622	ENSG00000155545	MIER3	-	MIER family member 3	protein-coding
169051	chr3	153167301	153167750	+	0	NA	3' UTR (NM_002886, exon 1 of 1)	3' UTR (NM_002886, exon 1 of 1)	5299	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
239398	chrY	22499751	22500130	+	0	NA	intron (NM_004676, intron 2 of 4).2	L1PA6|LINE|L1	9543	NM_004676	9081		NM_004676	ENSG00000169789	PRY	PRY1|PTPN13LY	PTPN13 like Y-linked	protein-coding
108403	chr18	69898301	69900050	+	0	NA	intron (NM_001303619, intron 1 of 4)	Tigger18a|DNA|TcMar-Tigger	48698	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
8598	chr1	41516121	41516900	+	0	NA	intron (NM_001127714, intron 6 of 7)	L2a|LINE|L2	-31827	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
231404	chr9	130958651	130959130	+	0	NA	Intergenic	(CACCAC)n|Simple_repeat|Simple_repeat	-19643	NM_032843	84929		NM_032843	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
152063	chr22	19720601	19720800	+	0	NA	intron (NR_037612, intron 6 of 11)	CpG-18755	2231	NR_037612	100526833		NR_037611	ENSG00000284874	SEPT5-GP1BB	GP1BB|GPIb-beta|GPIbB	SEPT5-GP1BB readthrough	ncRNA
24414	chr1	243413671	243414080	+	0	NA	intron (NM_001350251, intron 16 of 20).2	intron (NM_001350251, intron 16 of 20).2	67699	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
105488	chr17	83078571	83080300	+	0	NA	promoter-TSS (NM_001004431).2	promoter-TSS (NM_001004431).2	-174	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
196578	chr6	44154621	44154880	+	0	NA	exon (NM_018426, exon 24 of 24)	exon (NM_018426, exon 24 of 24)	-4070	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
168747	chr3	151170921	151171730	+	0	NA	intron (NM_053002, intron 10 of 42)	L2|LINE|L2	31891	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
102925	chr17	76582051	76582150	+	0	NA	intron (NM_006456, intron 1 of 8)	AluSc|SINE|Alu	3760	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
14499	chr1	144559351	144559850	+	0	NA	Intergenic	AluY|SINE|Alu	-7657	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
171224	chr3	195772251	195773000	+	0	NA	intron (NM_018406, intron 4 of 24)	intron (NM_018406, intron 4 of 24)	39304	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
189405	chr5	172764501	172768200	+	0	NA	Intergenic	Intergenic	4845	NM_004417	1843		NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
6660	chr1	29120151	29120600	+	0	NA	TTS (NM_203342)	TTS (NM_203342)	2126	NM_001171868	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
227826	chr9	93449401	93449850	+	0	NA	intron (NR_136230, intron 2 of 3)	AluSc|SINE|Alu	1983	NM_001322224	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
46780	chr11	129999201	129999600	+	0	NA	intron (NM_199437, intron 1 of 20)	intron (NM_199437, intron 1 of 20)	-3224	NR_024233	440072		NM_001007543		PRDM10-DT	C11orf37|LINC00167|NCRNA00167	PRDM10 divergent transcript	ncRNA
138590	chr2	208025221	208026230	+	0	NA	promoter-TSS (NM_001080475)	promoter-TSS (NM_001080475)	-198	NM_001080475	389072		NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
123390	chr19	53920651	53920750	+	0	NA	intron (NM_001384801, intron 4 of 4)	intron (NM_001384801, intron 4 of 4)	11422	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
144898	chr20	36939121	36940780	+	0	NA	intron (NM_001363733, intron 3 of 15)	AluSz|SINE|Alu	11758	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
52632	chr12	56273401	56274530	+	0	NA	intron (NM_004077, intron 9 of 10)	AluJb|SINE|Alu	6639	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
100194	chr17	58993611	58993750	+	0	NA	intron (NM_001005207, intron 24 of 24)	L1MC4a|LINE|L1	113200	NM_001353082	4591		NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
163668	chr3	52225371	52225730	+	0	NA	5' UTR (NM_017442, exon 1 of 2)	5' UTR (NM_017442, exon 1 of 2)	613	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
178349	chr4	145934221	145934880	+	0	NA	intron (NM_178835, intron 1 of 14)	intron (NM_178835, intron 1 of 14)	4273	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
117435	chr19	19649501	19650200	+	0	NA	exon (NM_020410, exon 18 of 26)	exon (NM_020410, exon 18 of 26)	-6193	NM_001288999	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
96734	chr17	41680251	41680350	+	0	NA	Intergenic	Intergenic	-8585	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
216830	chr8	22585201	22585700	+	0	NA	intron (NM_198042, intron 5 of 7)	intron (NM_198042, intron 5 of 7)	4975	NM_001368120	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
235785	chrX	49142271	49142450	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-18625	NM_015698	27238		NM_015698	ENSG00000068394	GPKOW	GPATC5|GPATCH5|Mos2|Spp2|T54	G-patch domain and KOW motifs	protein-coding
233076	chr9	137095471	137096850	+	0	NA	intron (NM_016219, intron 3 of 12)	intron (NM_016219, intron 3 of 12)	9175	NR_045721	11253		NM_016219	ENSG00000177239	MAN1B1	ERMAN1|ERManI|MANA-ER|MRT15	mannosidase alpha class 1B member 1	protein-coding
222478	chr8	140271901	140272300	+	0	NA	intron (NR_164662, intron 14 of 22)	(TAGTGG)n|Simple_repeat|Simple_repeat	-171565	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
20855	chr1	201895871	201896950	+	0	NA	TTS (NM_012134)	TTS (NM_012134)	7512	NM_198149	149345		NM_198149	ENSG00000198892	SHISA4	C1orf40|TMEM58	shisa family member 4	protein-coding
93043	chr17	17354751	17355400	+	0	NA	Intergenic	Intergenic	51702	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
12226	chr1	100410471	100411230	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	58344	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
106016	chr18	8045771	8046130	+	0	NA	intron (NM_001378146, intron 3 of 29)	THE1D|LTR|ERVL-MaLR	99075	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
155338	chr22	38225801	38226000	+	0	NA	intron (NM_001195071, intron 6 of 8)	intron (NM_001195071, intron 6 of 8)	-1180	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
100929	chr17	64473251	64473750	+	0	NA	3' UTR (NM_001369493, exon 10 of 10)	3' UTR (NM_001369493, exon 10 of 10)	23554	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
230927	chr9	129351971	129352730	+	0	NA	Intergenic	CpG	15427	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
178043	chr4	139607151	139607250	+	0	NA	Intergenic	Intergenic	-50431	NM_001306199	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
144866	chr20	36905871	36906330	+	0	NA	intron (NM_001363733, intron 11 of 15)	L1MC5|LINE|L1	29962	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
213462	chr7	138902101	138902580	+	0	NA	intron (NM_001164665, intron 8 of 19)	intron (NM_001164665, intron 8 of 19)	79049	NM_001164665	57670		NM_020910	ENSG00000122778	KIAA1549	RP86	KIAA1549	protein-coding
22463	chr1	221691771	221692130	+	0	NA	Intergenic	AluY|SINE|Alu	44950	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
75769	chr15	68674001	68674280	+	0	NA	intron (NM_001190456, intron 2 of 11)	intron (NM_001190456, intron 2 of 11)	32637	NM_001324015	10391		NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
147819	chr20	62708721	62709350	+	0	NA	5' UTR (NM_002531, exon 1 of 4)	5' UTR (NM_002531, exon 1 of 4)	199	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
71761	chr15	21109421	21109680	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	106273	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
33151	chr10	112435071	112435300	+	0	NA	intron (NR_147045, intron 6 of 11)	intron (NR_147045, intron 6 of 11)	11729	NM_022494	64429		NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|DHHC6|ZNF376	zinc finger DHHC-type palmitoyltransferase 6	protein-coding
50103	chr12	44856701	44857100	+	0	NA	intron (NM_001145108, intron 2 of 19)	L2a|LINE|L2	18761	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
60955	chr13	46556271	46557030	+	0	NA	intron (NM_015116, intron 1 of 18)	MIR3|SINE|MIR	3480	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
8386	chr1	40382671	40383030	+	0	NA	intron (NM_001198978, intron 1 of 9)	L2a|LINE|L2	8217	NM_001198978	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
8461	chr1	40710671	40710830	+	0	NA	intron (NM_001308115, intron 1 of 9)	intron (NM_001308115, intron 1 of 9)	1384	NM_001308115	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
163696	chr3	52263471	52263630	+	0	NA	intron (NM_025222, intron 3 of 8)	intron (NM_025222, intron 3 of 8)	4811	NR_029660	406890		NR_029660	ENSG00000199150	MIRLET7G	LET7G|MIRNLET7G|hsa-let-7g|let-7g	microRNA let-7g	ncRNA
15067	chr1	148451151	148451450	+	0	NA	intron (NR_027468, intron 1 of 4)	AluSq|SINE|Alu	8620	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
17347	chr1	156488501	156490130	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	1372	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
33858	chr10	124390501	124390700	+	0	NA	Intergenic	Intergenic	28323	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
32338	chr10	102242801	102244000	+	0	NA	Intergenic	Intergenic	-1888	NM_005029	5309		NM_005029	ENSG00000107859	PITX3	ASGD1|ASMD|ASOD|CTPP4|CTRCT11|PTX3	paired like homeodomain 3	protein-coding
193322	chr6	30147171	30147330	+	0	NA	intron (NM_138700, intron 3 of 4).8	intron (NM_138700, intron 3 of 4).8	10517	NM_138700	135644		NM_138700	ENSG00000204614	TRIM40	RNF35	tripartite motif containing 40	protein-coding
156894	chr22	42181771	42181930	+	0	NA	intron (NM_005650, intron 2 of 5)	AluJb|SINE|Alu	-37296	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
88926	chr16	87825701	87826630	+	0	NA	Intergenic	AluY|SINE|Alu	8495	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
116814	chr19	18553971	18554750	+	0	NA	Intergenic	AluSx|SINE|Alu	-3402	NM_001171948	79036		NM_024069	ENSG00000105700	KXD1	BORCS4|C10orf50|C19orf50|KXDL|MST096|MSTP096	KxDL motif containing 1	protein-coding
75538	chr15	66700401	66701790	+	0	NA	Intergenic	CpG	-1141	NM_005585	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
135111	chr2	157409051	157409550	+	0	NA	Intergenic	L1MC3|LINE|L1	-28791	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
207295	chr7	44005551	44006250	+	0	NA	intron (NM_175064, intron 4 of 6)	intron (NM_175064, intron 4 of 6)	4960	NM_175064	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
85903	chr16	57073201	57073400	+	0	NA	intron (NM_001384955, intron 37 of 47)	intron (NM_001384955, intron 37 of 47)	-19283	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
82310	chr16	15657971	15658430	+	0	NA	intron (NM_017668, intron 1 of 8)	MLT1K|LTR|ERVL-MaLR	7955	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
149929	chr21	36259451	36259550	+	0	NA	intron (NM_001320714, intron 23 of 36)	AluSz|SINE|Alu	-60689	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
92799	chr17	16002951	16003250	+	0	NA	intron (NM_017775, intron 4 of 9)	intron (NM_017775, intron 4 of 9)	3276	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
30295	chr10	75227651	75227950	+	0	NA	intron (NM_003375, intron 9 of 10)	AluSg4|SINE|Alu	8157	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
66683	chr14	63991821	63992230	+	0	NA	intron (NM_015180, intron 21 of 114)	intron (NM_015180, intron 21 of 114)	103100	NR_031677	100313830		NR_031677	ENSG00000221537	MIR548H1	MIR548H-1|MIRN548H1	microRNA 548h-1	ncRNA
148239	chr20	63634021	63636250	+	0	NA	Intergenic	AluJo|SINE|Alu	7900	NR_132418	100505771		NR_132417	ENSG00000232442	MHENCR	-	melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489	ncRNA
64055	chr14	22543701	22544300	+	0	NA	Intergenic	Intergenic	13062	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
200022	chr6	129648951	129649450	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	60977	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
213575	chr7	139356571	139356930	+	0	NA	intron (NM_001244584, intron 2 of 10)	MER58A|DNA|hAT-Charlie	-3096	NM_001270643	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
49468	chr12	25155121	25155730	+	0	NA	intron (NM_001352067, intron 1 of 10)	intron (NM_001352067, intron 1 of 10)	39735	NR_147909	55259		NM_018272	ENSG00000118307	DNAI7	CASC1|CFAP94|LAS1|PPP1R54	dynein axonemal intermediate chain 7	protein-coding
49100	chr12	14644151	14644630	+	0	NA	intron (NM_004963, intron 16 of 26)	intron (NM_004963, intron 16 of 26)	52209	NM_004963	2984		NM_004963	ENSG00000070019	GUCY2C	DIAR6|GC-C|GCC|GUC2C|HSER|MECIL|MUCIL|STAR	guanylate cyclase 2C	protein-coding
231172	chr9	129896471	129897030	+	0	NA	intron (NM_001363755, intron 15 of 15)	AluSx|SINE|Alu	27145	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
176628	chr4	99817521	99818030	+	0	NA	intron (NM_014395, intron 1 of 8)	intron (NM_014395, intron 1 of 8)	948	NM_014395	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
152369	chr22	20506171	20506700	+	0	NA	Intergenic	AluSq|SINE|Alu	-1175	NM_001293236	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
163940	chr3	52742371	52742730	+	0	NA	intron (NM_001348414, intron 12 of 15)	intron (NM_001348414, intron 12 of 15)	28390	NM_001348413	6787		NM_003157	ENSG00000114904	NEK4	NRK2|STK2|pp12301	NIMA related kinase 4	protein-coding
48152	chr12	7926151	7926880	+	0	NA	intron (NM_006931, intron 6 of 9)	intron (NM_006931, intron 6 of 9)	9672	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
220777	chr8	102530621	102531400	+	0	NA	Intergenic	Intergenic	-20579	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
172175	chr4	1231101	1232380	+	0	NA	intron (NM_001377193, intron 3 of 9)	intron (NM_001377193, intron 3 of 9)	16988	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
60437	chr13	41001601	41002000	+	0	NA	intron (NM_001370329, intron 1 of 9)	FAM|SINE|Alu	17516	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
30260	chr10	75121101	75121700	+	0	NA	intron (NM_144660, intron 1 of 4)	MIR3|SINE|MIR	9744	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
153257	chr22	24108071	24108430	+	0	NA	intron (NM_012295, intron 26 of 36)	MIRb|SINE|MIR	-73237	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
69910	chr14	99509771	99510100	+	0	NA	3' UTR (NM_001144995, exon 6 of 6)	3' UTR (NM_001144995, exon 6 of 6)	28526	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
154737	chr22	36471451	36471750	+	0	NA	intron (NM_012473, intron 3 of 3)	MIRb|SINE|MIR	10040	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
219131	chr8	66058421	66058830	+	0	NA	intron (NR_146171, intron 4 of 6)	intron (NR_146171, intron 4 of 6)	37072	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
70543	chr14	102518251	102518350	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-8524	NM_001348652	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
239366	chrY	20577501	20577700	+	0	NA	intron (NM_004681, intron 1 of 6)	AluY|SINE|Alu	1824	NM_004681	9086		NM_004681	ENSG00000198692	EIF1AY	eIF-4C	eukaryotic translation initiation factor 1A Y-linked	protein-coding
206856	chr7	37438771	37439130	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	10002	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
208570	chr7	72831871	72832580	+	0	NA	intron (NR_024111, intron 2 of 3)	AluSx|SINE|Alu	2852	NR_024110	155370		NR_001588	ENSG00000291152	SBDSP1	SBDSP	SBDS pseudogene 1	pseudo
118071	chr19	34346771	34347030	+	0	NA	intron (NM_014686, intron 10 of 13)	AluSq2|SINE|Alu	-17840	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
171409	chr3	196207071	196208500	+	0	NA	intron (NR_135617, intron 4 of 8)	intron (NR_135617, intron 4 of 8)	3615	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
126310	chr2	27278471	27278830	+	0	NA	intron (NM_173650, intron 5 of 6)	AluSz|SINE|Alu	-2833	NM_001318950	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
104558	chr17	81339621	81340280	+	0	NA	Intergenic	Intergenic	-9276	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
166134	chr3	111538671	111539080	+	0	NA	Intergenic	L2|LINE|L2	-3322	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
201024	chr6	141488501	141488730	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-644544	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
72161	chr15	29113571	29113930	+	0	NA	intron (NM_001353793, intron 11 of 12).2	CpG	43092	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
138023	chr2	201280571	201280730	+	0	NA	intron (NR_111983, intron 7 of 8)	HAL1|LINE|L1	20114	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
22599	chr1	223233251	223234150	+	0	NA	intron (NM_017982, intron 5 of 8)	intron (NM_017982, intron 5 of 8)	-90452	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
225898	chr9	39797971	39798330	+	0	NA	Intergenic	MER52A|LTR|ERV1	12009	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
115989	chr19	17082771	17082930	+	0	NA	intron (NM_004145, intron 1 of 39)	intron (NM_004145, intron 1 of 39)	7073	NM_004145	4650		NM_004145	ENSG00000099331	MYO9B	CELIAC4|MYR5	myosin IXB	protein-coding
50735	chr12	48987351	48987450	+	0	NA	Intergenic	Intergenic	9078	NM_005430	7471		NM_005430	ENSG00000125084	WNT1	BMND16|INT1|OI15	Wnt family member 1	protein-coding
230174	chr9	127782901	127784070	+	0	NA	Intergenic	MIR|SINE|MIR	-2348	NR_039767	100616250		NR_039767	ENSG00000283863	MIR3960	-	microRNA 3960	ncRNA
5976	chr1	26930821	26931280	+	0	NA	intron (NM_006600, intron 2 of 8)	L1MB2|LINE|L1	9307	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
4789	chr1	23562071	23562600	+	0	NA	Intergenic	Intergenic	-2834	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
56163	chr12	111402271	111402430	+	0	NA	Intergenic	AluSg4|SINE|Alu	-3573	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
24889	chr10	1000321	1000580	+	0	NA	intron (NM_012341, intron 6 of 16)	AluY|SINE|Alu	12016	NM_012341	23560		NM_012341	ENSG00000107937	GTPBP4	CRFG|NGB|NOG1	GTP binding protein 4	protein-coding
112727	chr19	7294021	7294750	+	0	NA	promoter-TSS (NM_000208)	promoter-TSS (NM_000208)	29	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
72868	chr15	40277571	40278280	+	0	NA	TTS (NM_001190479)	TTS (NM_001190479)	4661	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
199804	chr6	127303751	127304080	+	0	NA	intron (NM_001139510, intron 5 of 5)	L1MA2|LINE|L1	37051	NM_001242850	81847		NM_030963	ENSG00000118518	RNF146	-	ring finger protein 146	protein-coding
87941	chr16	79415871	79416490	+	0	NA	Intergenic	Intergenic	184557	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
28908	chr10	63156571	63157100	+	0	NA	Intergenic	MER21C|LTR|ERVL	23507	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
139155	chr2	219160051	219161050	+	0	NA	promoter-TSS (NM_001377498)	promoter-TSS (NM_001377498)	5	NM_001377498	79840		NM_024782	ENSG00000187736	NHEJ1	XLF	non-homologous end joining factor 1	protein-coding
103096	chr17	77338621	77339280	+	0	NA	intron (NM_006640, intron 1 of 10)	Tigger1|DNA|TcMar-Tigger	19435	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
140378	chr2	233058351	233058880	+	0	NA	Intergenic	Intergenic	-1727	NM_005541	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
136648	chr2	179990221	179990680	+	0	NA	intron (NM_001376029, intron 2 of 19)	intron (NM_001376029, intron 2 of 19)	9456	NM_001376030	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
148148	chr20	63498981	63500600	+	0	NA	promoter-TSS (NM_001958)	promoter-TSS (NM_001958)	-707	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
71296	chr14	105296371	105296530	+	0	NA	intron (NM_001242787, intron 1 of 17)	AluYc|SINE|Alu	-4324	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
36200	chr11	3419271	3420300	+	0	NA	Intergenic	Intergenic	-27870	NR_044999	10821		NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
2301	chr1	8984921	8985680	+	0	NA	Intergenic	Intergenic	39432	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
215082	chr7	154968371	154968900	+	0	NA	exon (NM_007349, exon 7 of 21)	exon (NM_007349, exon 7 of 21)	34489	NM_007349	22976		NM_007349	ENSG00000157212	PAXIP1	CAGF28|CAGF29|PACIP1|PAXIP1L|PTIP|TNRC2	PAX interacting protein 1	protein-coding
198976	chr6	110894271	110894430	+	0	NA	non-coding (NR_109768, exon 6 of 6)	non-coding (NR_109768, exon 6 of 6)	19566	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
96970	chr17	42250971	42251130	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	25341	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
91199	chr17	3903851	3905380	+	0	NA	intron (NM_002558, intron 3 of 11)	intron (NM_002558, intron 3 of 11)	-11562	NM_032294	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
95191	chr17	35213871	35215230	+	0	NA	Intergenic	HAL1|LINE|L1	-20157	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
223544	chr8	144146451	144149530	+	0	NA	promoter-TSS (NM_001099281)	promoter-TSS (NM_001099281)	-26	NM_032450	727957		NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat like repeat family member 1	protein-coding
238344	chrX	149548221	149548480	+	0	NA	TTS (NM_001324280)	TTS (NM_001324280)	1574	NM_001323079	101928917		NM_001323079	ENSG00000283697	HSFX3	-	heat shock transcription factor family, X-linked member 3	protein-coding
101343	chr17	66906551	66906900	+	0	NA	Intergenic	Intergenic	-57982	NM_014405	27092		NM_014405	ENSG00000075461	CACNG4	-	calcium voltage-gated channel auxiliary subunit gamma 4	protein-coding
194108	chr6	31949951	31950450	+	0	NA	intron (NM_001710, intron 11 of 17).3	intron (NM_001710, intron 11 of 17).3	4105	NM_001710	629		NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
222795	chr8	142339221	142339480	+	0	NA	intron (NM_001291931, intron 2 of 10)	intron (NM_001291931, intron 2 of 10)	63832	NM_001366901	203062		NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
12514	chr1	108214601	108215050	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-14482	NM_013386	29957		NM_013386	ENSG00000085491	SLC25A24	APC1|SCAMC-1|SCAMC1	solute carrier family 25 member 24	protein-coding
170197	chr3	183886821	183887150	+	0	NA	TTS (NR_039650)	TTS (NR_039650)	185	NR_039650	100616127		NR_039650	ENSG00000263932	MIR4448	-	microRNA 4448	ncRNA
95898	chr17	38891391	38892080	+	0	NA	intron (NM_006148, intron 3 of 6)	intron (NM_006148, intron 3 of 6)	21677	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
231229	chr9	129969171	129969330	+	0	NA	intron (NM_001363755, intron 4 of 15)	intron (NM_001363755, intron 4 of 15)	73939	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
61611	chr13	73622321	73622580	+	0	NA	Intergenic	Intergenic	58206	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
65619	chr14	52273701	52273900	+	0	NA	intron (NM_001281469, intron 2 of 2)	intron (NM_001281469, intron 2 of 2)	6102	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
101227	chr17	65750421	65750890	+	0	NA	intron (NM_001353127, intron 22 of 26)	intron (NM_001353127, intron 22 of 26)	75796	NM_001037325	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
109378	chr19	649601	650580	+	0	NA	intron (NM_194460, intron 5 of 8)	intron (NM_194460, intron 5 of 8)	10195	NM_001300812	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
57833	chr12	123241801	123242800	+	0	NA	intron (NM_001194995, intron 1 of 2)	intron (NM_001194995, intron 1 of 2)	8556	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
87778	chr16	75418301	75418700	+	0	NA	intron (NM_006324, intron 1 of 6)	AluYg6|SINE|Alu	15003	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
147602	chr20	62065371	62066930	+	0	NA	promoter-TSS (NM_003185)	promoter-TSS (NM_003185)	-340	NM_003185	6874		NM_003185	ENSG00000130699	TAF4	MRD73|TAF(II)130|TAF(II)135|TAF2C|TAF2C1|TAF4A|TAFII-130|TAFII-135|TAFII130|TAFII135	TATA-box binding protein associated factor 4	protein-coding
115548	chr19	15503801	15504000	+	0	NA	Intergenic	L1MB5|LINE|L1	-4625	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
40423	chr11	64171451	64171750	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-5487	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
170222	chr3	184174121	184175700	+	0	NA	promoter-TSS (NM_001311198)	promoter-TSS (NM_001311198)	55	NM_004068	1173		NM_004068	ENSG00000161203	AP2M1	AP50|CLAPM1|MRD60|mu2	adaptor related protein complex 2 subunit mu 1	protein-coding
109651	chr19	1007201	1007880	+	0	NA	intron (NM_138690, intron 3 of 8)	MER20|DNA|hAT-Charlie	7121	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
101192	chr17	65370721	65371130	+	0	NA	Intergenic	Intergenic	-86616	NR_131984	105827617		NR_131984	ENSG00000263520	LINC02563	CRAT40	long intergenic non-protein coding RNA 2563	ncRNA
60089	chr13	36297501	36298230	+	0	NA	promoter-TSS (NM_001144984)	promoter-TSS (NM_001144984)	-51	NM_001144982	728591		NM_001144981	ENSG00000242715	CCDC169	C13orf38	coiled-coil domain containing 169	protein-coding
40375	chr11	63994151	63994450	+	0	NA	intron (NR_003089, intron 3 of 5)	AluSc|SINE|Alu	8447	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
226280	chr9	68314751	68315250	+	0	NA	Intergenic	SATR2|Satellite|Satellite	12133	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
110428	chr19	1969871	1970030	+	0	NA	exon (NM_001319, exon 2 of 12)	exon (NM_001319, exon 2 of 12)	-15401	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
147952	chr20	62960601	62961450	+	0	NA	intron (NM_022082, intron 4 of 12)	intron (NM_022082, intron 4 of 12)	8316	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
220799	chr8	102660451	102661130	+	0	NA	intron (NR_160672, intron 1 of 4)	THE1C|LTR|ERVL-MaLR	4542	NR_160673	101927245		NR_160672	ENSG00000283959	LOC101927245	-	uncharacterized LOC101927245	ncRNA
237451	chrX	119692001	119692700	+	0	NA	intron (NM_145799, intron 1 of 10)	intron (NM_145799, intron 1 of 10)	818	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
116257	chr19	17616271	17616900	+	0	NA	intron (NM_001080421, intron 39 of 41)	intron (NM_001080421, intron 39 of 41)	60936	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
10776	chr1	77320001	77320200	+	0	NA	intron (NM_174858, intron 5 of 13)	THE1C|LTR|ERVL-MaLR	37013	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
11078	chr1	85248721	85249000	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	10802	NR_024113	148423		NM_198077	ENSG00000162642	C1orf52	gm117	chromosome 1 open reading frame 52	protein-coding
101049	chr17	64811101	64811500	+	0	NA	intron (NR_024386, intron 4 of 10)	intron (NR_024386, intron 4 of 10)	10802	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
165015	chr3	71390001	71391080	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-85769	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
231047	chr9	129624901	129625290	+	0	NA	intron (NM_001286797, intron 1 of 3)	MIR|SINE|MIR	-1058	NM_001286798	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
109901	chr19	1280851	1281600	+	0	NA	Intergenic	Intergenic	-4648	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
33912	chr10	124595901	124596300	+	0	NA	intron (NM_022126, intron 6 of 6)	L1ME3|LINE|L1	-107928	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
26534	chr10	21515351	21515530	+	0	NA	exon (NM_207371, exon 4 of 4)	exon (NM_207371, exon 4 of 4)	10242	NM_207371	387640		NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
164413	chr3	58549521	58549980	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-12560	NM_003500	8309		NM_003500	ENSG00000168306	ACOX2	BCOX|BRCACOX|BRCOX|CBAS6|THCCox	acyl-CoA oxidase 2	protein-coding
176386	chr4	88621751	88622050	+	0	NA	intron (NM_001375479, intron 4 of 25)	intron (NM_001375479, intron 4 of 25)	29420	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
80507	chr16	2743001	2743200	+	0	NA	intron (NR_027274, intron 2 of 5)	intron (NR_027274, intron 2 of 5)	1697	NR_027274	100128788		NR_027274	ENSG00000205913	SRRM2-AS1	-	SRRM2 antisense RNA 1	ncRNA
182421	chr5	61407401	61407830	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	75357	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
59420	chr13	25304951	25305250	+	0	NA	intron (NM_001008564, intron 1 of 14)	intron (NM_001008564, intron 1 of 14)	3475	NM_001008564	9818		NM_014089	ENSG00000139496	NUP58	NUP45|NUPL1|PRO2463	nucleoporin 58	protein-coding
123529	chr19	54286351	54286540	+	0	NA	Intergenic	L1PA15-16|LINE|L1	4336	NR_039907	100616171		NR_039907	ENSG00000264703	MIR4752	-	microRNA 4752	ncRNA
97553	chr17	44077621	44077880	+	0	NA	3' UTR (NM_001015053, exon 27 of 27)	3' UTR (NM_001015053, exon 27 of 27)	6839	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
138329	chr2	203802501	203803250	+	0	NA	Intergenic	Intergenic	-64896	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
208327	chr7	66202221	66202730	+	0	NA	Intergenic	Intergenic	-2859	NM_003596	8460		NM_003596	ENSG00000169902	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
89060	chr16	88449151	88449880	+	0	NA	Intergenic	Intergenic	-3765	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
150900	chr21	44156971	44157130	+	0	NA	Intergenic	Intergenic	2812	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
216054	chr8	10052121	10052380	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-2042	NM_001135670	4482		NM_012331	ENSG00000175806	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
226001	chr9	41351401	41352380	+	0	NA	Intergenic	Intergenic	-6972	NR_148348	107984035		NR_148348		LOC107984035	-	uncharacterized LOC107984035	ncRNA
131244	chr2	95993971	95994330	+	0	NA	Intergenic	L3|LINE|CR1	-2326	NM_001310154	400986		NM_001010914	ENSG00000174501	ANKRD36C	-	ankyrin repeat domain 36C	protein-coding
69635	chr14	97719821	97720330	+	0	NA	Intergenic	L1MA9|LINE|L1	-33417	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
64989	chr14	38073301	38074000	+	0	NA	Intergenic	Helitron3Na_Mam|RC|Helitron	-134254	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
140651	chr2	233723951	233724250	+	0	NA	intron (NM_007120, intron 1 of 4)	SVA_F|Retroposon|SVA	-4942	NM_019093	54659		NM_019093	ENSG00000288702	UGT1A3	UDPGT|UDPGT 1-3|UGT-1C|UGT1-03|UGT1.3|UGT1A3S|UGT1C	UDP glucuronosyltransferase family 1 member A3	protein-coding
226334	chr9	69180651	69181100	+	0	NA	intron (NM_004817, intron 1 of 22)	intron (NM_004817, intron 1 of 22)	6598	NM_004817	9414		NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|FHCA1|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
173450	chr4	8392851	8393330	+	0	NA	intron (NM_001375787, intron 10 of 17)	5S|rRNA|rRNA	35358	NM_001375787	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
225866	chr9	38417001	38417330	+	0	NA	intron (NM_001007563, intron 1 of 4)	MIR|SINE|MIR	7289	NM_001007563	347252		NM_001007563	ENSG00000137142	IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin like growth factor binding protein like 1	protein-coding
68808	chr14	91251151	91251480	+	0	NA	intron (NM_001348437, intron 1 of 2)	MLT1G1|LTR|ERVL-MaLR	2565	NM_001348437	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
3247	chr1	13807171	13807730	+	0	NA	intron (NM_012231, intron 8 of 9)	L2a|LINE|L2	58035	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
166616	chr3	119437851	119438350	+	0	NA	exon (NM_018266, exon 6 of 9)	exon (NM_018266, exon 6 of 9)	25515	NR_073506	55254		NM_018266	ENSG00000176142	TMEM39A	SUSR2	transmembrane protein 39A	protein-coding
14563	chr1	145009551	145011280	+	0	NA	intron (NM_001385227, intron 2 of 8)	HAL1b|LINE|L1	-83881	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
208243	chr7	65489701	65489900	+	0	NA	Intergenic	(CCATT)n|Simple_repeat|Simple_repeat	65265	NR_157837	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
211826	chr7	108452771	108453300	+	0	NA	intron (NM_001371128, intron 1 of 31)	intron (NM_001371128, intron 1 of 31)	3362	NM_005010	4897		NM_005010	ENSG00000091129	NRCAM	NEDNMS	neuronal cell adhesion molecule	protein-coding
48911	chr12	12589671	12590030	+	0	NA	Intergenic	Intergenic	-22026	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
201942	chr6	151494671	151494830	+	0	NA	intron (NM_025059, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	733	NM_025059	80129		NM_025059	ENSG00000120262	CCDC170	C6orf97|bA282P11.1	coiled-coil domain containing 170	protein-coding
177095	chr4	108072021	108072950	+	0	NA	intron (NM_016269, intron 8 of 11)	intron (NM_016269, intron 8 of 11)	67821	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
91027	chr17	2816071	2816230	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	19712	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
89095	chr16	88482621	88483630	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	14207	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
150650	chr21	43413071	43413230	+	0	NA	Intergenic	L1MB3|LINE|L1	13981	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
54824	chr12	94764051	94764600	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-70073	NR_030171	574449		NR_030171	ENSG00000283998	MIR492	MIRN492|hsa-mir-492	microRNA 492	ncRNA
6066	chr1	27145771	27146350	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	9065	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
137275	chr2	195382171	195382600	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-274573	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
113894	chr19	10680771	10681150	+	0	NA	intron (NM_153464, intron 9 of 17)	intron (NM_153464, intron 9 of 17)	-20479	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
136960	chr2	190405371	190406280	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1751	NM_001375989	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
68101	chr14	75301471	75302680	+	0	NA	Intergenic	AluJb|SINE|Alu	7671	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
121435	chr19	47028221	47029230	+	0	NA	intron (NM_002517, intron 3 of 11)	MIR|SINE|MIR	-6592	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
153814	chr22	29721601	29721950	+	0	NA	intron (NM_182527, intron 1 of 4)	intron (NM_182527, intron 1 of 4)	1772	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
128638	chr2	61401221	61401680	+	0	NA	intron (NM_014709, intron 3 of 79)	AluJr|SINE|Alu	15927	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
140901	chr2	237686201	237686800	+	0	NA	intron (NM_001137550, intron 1 of 23)	(CCAT)n|Simple_repeat|Simple_repeat	-5664	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
103068	chr17	77279351	77280330	+	0	NA	intron (NR_136503, intron 1 of 2).2	G-rich|Low_complexity|Low_complexity	-1659	NM_001293695	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
64238	chr14	23096301	23097130	+	0	NA	intron (NM_017924, intron 1 of 1)	AluJb|SINE|Alu	-1101	NM_001164815	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
34107	chr10	125997751	125998050	+	0	NA	intron (NM_145235, intron 6 of 10)	intron (NM_145235, intron 6 of 10)	-24627	NR_102707	101410540		NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
75947	chr15	70308071	70308500	+	0	NA	Intergenic	L2|LINE|L2	197643	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
162291	chr3	47407621	47408100	+	0	NA	intron (NM_001304482, intron 12 of 23)	intron (NM_001304482, intron 12 of 23)	26839	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
230402	chr9	128111301	128111700	+	0	NA	non-coding (NR_033374, exon 5 of 5)	non-coding (NR_033374, exon 5 of 5)	7234	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
111874	chr19	4650351	4650930	+	0	NA	intron (NM_001167942, intron 1 of 1)	intron (NM_001167942, intron 1 of 1)	10623	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
169287	chr3	158168151	158168450	+	0	NA	intron (NM_001271834, intron 3 of 8)	MLT1H2|LTR|ERVL-MaLR	58211	NM_001271838	51319		NM_016625	ENSG00000174891	RSRC1	BM-011|MRT70|SFRS21|SRrp53	arginine and serine rich coiled-coil 1	protein-coding
34309	chr10	132036301	132036950	+	0	NA	Intergenic	CpG	-29321	NM_001323086	282973		NM_194303	ENSG00000188385	JAKMIP3	C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5	Janus kinase and microtubule interacting protein 3	protein-coding
82049	chr16	12551321	12551830	+	0	NA	intron (NM_032167, intron 20 of 20)	intron (NM_032167, intron 20 of 20)	-168746	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
26115	chr10	13439301	13439750	+	0	NA	intron (NM_152751, intron 8 of 8)	(GAAT)n|Simple_repeat|Simple_repeat	64068	NM_001100912	222389		NM_152751	ENSG00000165626	BEND7	C10orf30	BEN domain containing 7	protein-coding
222822	chr8	142477601	142478450	+	0	NA	intron (NM_001702, intron 6 of 30)	intron (NM_001702, intron 6 of 30)	28376	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
208821	chr7	73664821	73665550	+	0	NA	Intergenic	AluY|SINE|Alu	-2646	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
144909	chr20	36950401	36952150	+	0	NA	intron (NM_001363733, intron 1 of 15)	CpG	433	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
126163	chr2	26350051	26350150	+	0	NA	intron (NR_137633, intron 1 of 9)	AluJr|SINE|Alu	-3311	NM_153835	165082		NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding
38445	chr11	45293551	45293900	+	0	NA	Intergenic	Intergenic	-7384	NM_020826	57586		NM_020826	ENSG00000019505	SYT13	-	synaptotagmin 13	protein-coding
43030	chr11	74008471	74009450	+	0	NA	intron (NM_022803, intron 1 of 5)	GA-rich|Low_complexity|Low_complexity	125	NM_003356	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
117845	chr19	31356121	31356380	+	0	NA	Intergenic	Intergenic	-6814	NR_138035	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
45636	chr11	118955521	118955780	+	0	NA	promoter-TSS (NM_006760)	promoter-TSS (NM_006760)	-648	NM_006760	7379		NM_006760	ENSG00000110375	UPK2	UP2|UPII	uroplakin 2	protein-coding
117370	chr19	19566301	19566500	+	0	NA	intron (NM_025245, intron 5 of 7)	intron (NM_025245, intron 5 of 7)	28135	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
216440	chr8	19473051	19474000	+	0	NA	intron (NR_148900, intron 3 of 9)	intron (NR_148900, intron 3 of 9)	129020	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
69412	chr14	94060251	94061200	+	0	NA	intron (NM_020414, intron 4 of 8).2	(CA)n|Simple_repeat|Simple_repeat	20477	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
93084	chr17	17627101	17627300	+	0	NA	Intergenic	Intergenic	-35492	NM_001267551	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
173044	chr4	4990951	4991250	+	0	NA	Intergenic	Intergenic	28358	NM_018659	54360		NM_018659	ENSG00000170891	CYTL1	C17|C4orf4	cytokine like 1	protein-coding
198949	chr6	110784221	110784880	+	0	NA	intron (NM_001300963, intron 1 of 13)	L1MB7|LINE|L1	-30071	NM_001287215	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
71485	chr14	105983101	105983300	+	0	NA	Intergenic	HERVL32-int|LTR|ERVL	-10931	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
214993	chr7	152317371	152317780	+	0	NA	intron (NM_170606, intron 3 of 58)	L1MCc|LINE|L1	118428	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
144659	chr20	36142751	36143280	+	0	NA	intron (NM_001258330, intron 3 of 20)	intron (NM_001258330, intron 3 of 20)	-11725	NM_012156	2036		NM_012156	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1 like 1	protein-coding
33657	chr10	119750551	119750880	+	0	NA	intron (NM_001243195, intron 1 of 4)	intron (NM_001243195, intron 1 of 4)	24665	NM_014937	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
129117	chr2	65226801	65229150	+	0	NA	intron (NM_005722, intron 1 of 8)	CpG	144	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
224791	chr9	22119601	22119880	+	0	NA	intron (NR_047543, intron 7 of 8)	intron (NR_047543, intron 7 of 8)	-110427	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
199210	chr6	111794671	111795880	+	0	NA	intron (NM_002037, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	-35358	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
166962	chr3	125359621	125360200	+	0	NA	intron (NM_001348427, intron 1 of 9)	intron (NM_001348427, intron 1 of 9)	-2630	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
185329	chr5	126799721	126800200	+	0	NA	intron (NR_134488, intron 1 of 11)	intron (NR_134488, intron 1 of 11)	22824	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
114143	chr19	11279601	11280400	+	0	NA	Intergenic	Intergenic	-16160	NM_012466	26526		NM_012466	ENSG00000130167	TSPAN16	TM-8|TM4-B|TM4SF16	tetraspanin 16	protein-coding
63508	chr13	114244371	114244930	+	0	NA	TTS (NR_049839)	TTS (NR_049839)	145	NR_049839	100847035		NR_049839	ENSG00000264539	MIR548AR	-	microRNA 548ar	ncRNA
18613	chr1	165829801	165830100	+	0	NA	intron (NM_012474, intron 1 of 6)	AluJb|SINE|Alu	2336	NM_012474	7371		NM_012474	ENSG00000143179	UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
62717	chr13	104869651	104869830	+	0	NA	Intergenic	L1MB7|LINE|L1	-596127	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
1118	chr1	2122951	2123800	+	0	NA	intron (NM_001033582, intron 1 of 14)	CpG	18659	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
151259	chr21	45325401	45325830	+	0	NA	Intergenic	Intergenic	16375	NR_103811	388830		NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
103172	chr17	77437001	77437850	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-13324	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
79853	chr16	1471951	1472250	+	0	NA	intron (NM_001287, intron 1 of 24)	intron (NM_001287, intron 1 of 24)	2928	NM_001287	1186		NM_001287	ENSG00000103249	CLCN7	CLC-7|CLC7|HOD|OPTA2|OPTB4|PPP1R63	chloride voltage-gated channel 7	protein-coding
57180	chr12	121438421	121438950	+	0	NA	intron (NM_001005366, intron 21 of 22)	intron (NM_001005366, intron 21 of 22)	5667	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
77710	chr15	85691401	85692300	+	0	NA	intron (NM_007200, intron 16 of 36)	intron (NM_007200, intron 16 of 36)	66875	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
236112	chrX	57286351	57287250	+	0	NA	promoter-TSS (NR_148564)	promoter-TSS (NR_148564)	-54	NR_148557	158584		NM_174912	ENSG00000165591	FAAH2	AMDD	fatty acid amide hydrolase 2	protein-coding
10256	chr1	64246321	64246630	+	0	NA	TTS (NR_158768)	TTS (NR_158768)	42852	NM_001366235	148581		NM_152489	ENSG00000177414	UBE2U	-	ubiquitin conjugating enzyme E2 U	protein-coding
51572	chr12	52610301	52611080	+	0	NA	non-coding (NR_126005, exon 1 of 3)	non-coding (NR_126005, exon 1 of 3)	839	NR_126005	100127967		NR_126005	ENSG00000257495	KRT73-AS1	-	KRT73 antisense RNA 1	ncRNA
168796	chr3	152195351	152195730	+	0	NA	intron (NR_136178, intron 1 of 2)	AluSc8|SINE|Alu	9889	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
8337	chr1	40178121	40178650	+	0	NA	intron (NM_012421, intron 1 of 7)	L1MB3|LINE|L1	16998	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
52176	chr12	54300621	54302130	+	0	NA	promoter-TSS (NM_001136023)	promoter-TSS (NM_001136023)	-338	NM_001261461	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
22825	chr1	225335321	225335580	+	0	NA	intron (NM_001367479, intron 66 of 85)	intron (NM_001367479, intron 66 of 85)	92588	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
224460	chr9	15509201	15509400	+	0	NA	intron (NM_001317898, intron 2 of 10)	intron (NM_001317898, intron 2 of 10)	989	NM_021144	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
103404	chr17	78179671	78180480	+	0	NA	intron (NM_001363848, intron 4 of 5)	AluSx1|SINE|Alu	6977	NM_001346663	7083		NM_003258	ENSG00000167900	TK1	TK2	thymidine kinase 1	protein-coding
153200	chr22	23853851	23854150	+	0	NA	intron (NR_003082, intron 4 of 4)	SVA_E|Retroposon|SVA	-2703	NR_104248	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
157421	chr22	45158921	45159380	+	0	NA	intron (NR_038956, intron 1 of 2)	AluJb|SINE|Alu	4631	NR_038956	100506714		NR_038956	ENSG00000226328	NUP50-DT	NUP50-AS1	NUP50 divergent transcript	ncRNA
66644	chr14	63867771	63867930	+	0	NA	intron (NM_015180, intron 1 of 114)	AluJr|SINE|Alu	14846	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
191518	chr6	11353951	11354550	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	28098	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
185023	chr5	115542171	115542930	+	0	NA	intron (NM_020177, intron 2 of 2)	intron (NM_020177, intron 2 of 2)	2225	NM_020177	56929		NM_020177	ENSG00000145780	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog C	protein-coding
184425	chr5	98931971	98932480	+	0	NA	intron (NR_151718, intron 1 of 3)	intron (NR_151718, intron 1 of 3)	3091	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
3726	chr1	16624771	16625600	+	0	NA	intron (NR_026752, intron 5 of 6)	intron (NR_026752, intron 5 of 6)	5721	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
62925	chr13	111176851	111177950	+	0	NA	intron (NM_001354057, intron 3 of 18)	intron (NM_001354057, intron 3 of 18)	-9394	NM_001113513	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
176501	chr4	94208951	94209050	+	0	NA	intron (NM_001375857, intron 2 of 23)	L2b|LINE|L2	916	NR_045644	56916		NM_020159	ENSG00000163104	SMARCAD1	ADERM|BASNS|ETL1|HEL1|HRZ|TYS	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding
7243	chr1	32344471	32344700	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-8352	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
198588	chr6	107669021	107669550	+	0	NA	Intergenic	Intergenic	62865	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
87258	chr16	69831351	69831450	+	0	NA	intron (NM_001270455, intron 4 of 8)	intron (NM_001270455, intron 4 of 8)	-7337	NM_001270453	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
195503	chr6	37180551	37181100	+	0	NA	Intergenic	AluJr4|SINE|Alu	10673	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
83793	chr16	28771771	28771930	+	0	NA	intron (NM_001287251, intron 7 of 7)	intron (NM_001287251, intron 7 of 7)	19415	NM_001287250	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
89325	chr16	88737221	88738500	+	0	NA	non-coding (NR_103774, exon 2 of 3)	non-coding (NR_103774, exon 2 of 3)	-4907	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
163647	chr3	52145451	52145700	+	0	NA	intron (NM_001161580, intron 6 of 9)	intron (NM_001161580, intron 6 of 9)	8848	NM_015426	25886		NM_015426	ENSG00000164087	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
91397	chr17	4626001	4626300	+	0	NA	Intergenic	Intergenic	15528	NM_001140	246		NM_001140	ENSG00000161905	ALOX15	12-LOX|15-LOX|15-LOX-1|LOG15	arachidonate 15-lipoxygenase	protein-coding
89473	chr16	89096551	89097640	+	0	NA	intron (NM_001127214, intron 1 of 9)	intron (NM_001127214, intron 1 of 9)	3243	NM_001284316	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
147420	chr20	58891901	58893090	+	0	NA	intron (NR_132272, intron 1 of 3)	CpG-17921	332	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
114392	chr19	12610301	12611650	+	0	NA	promoter-TSS (NM_153358)	promoter-TSS (NM_153358)	55	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
227595	chr9	92668101	92668300	+	0	NA	intron (NM_022755, intron 1 of 12)	AluSz|SINE|Alu	1931	NM_022755	64768		NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
154312	chr22	31956021	31956950	+	0	NA	exon (NM_003405, exon 2 of 2)	exon (NM_003405, exon 2 of 2)	-11123	NM_015372	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
143201	chr20	24950301	24950990	+	0	NA	intron (NM_003650, intron 1 of 3)	intron (NM_003650, intron 1 of 3)	1376	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
70584	chr14	102615051	102615350	+	0	NA	intron (NM_015156, intron 2 of 11)	AluSz|SINE|Alu	22551	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
168768	chr3	151273251	151273550	+	0	NA	intron (NM_014879, intron 1 of 2)	AluSg|SINE|Alu	5142	NM_014879	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
130126	chr2	74587501	74588000	+	0	NA	intron (NM_001321739, intron 4 of 10)	intron (NM_001321739, intron 4 of 10)	33590	NM_001381	1796		NM_001381	ENSG00000115325	DOK1	P62DOK|pp62	docking protein 1	protein-coding
173922	chr4	25312371	25313450	+	0	NA	exon (NM_001318148, exon 1 of 9)	exon (NM_001318148, exon 1 of 9)	136	NM_024936	29063		NM_014150	ENSG00000168228	ZCCHC4	HSPC052|ZGRF4	zinc finger CCHC-type containing 4	protein-coding
230620	chr9	128631251	128631650	+	0	NA	intron (NM_001375310, intron 53 of 57)	AluSq2|SINE|Alu	25400	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
101076	chr17	64910221	64910480	+	0	NA	intron (NM_199340, intron 2 of 14)	intron (NM_199340, intron 2 of 14)	9141	NM_199340	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
105153	chr17	82251401	82252280	+	0	NA	intron (NM_139062, intron 5 of 9)	AluY|SINE|Alu	15172	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
12135	chr1	100072051	100072150	+	0	NA	intron (NM_033055, intron 8 of 11)	intron (NM_033055, intron 8 of 11)	34005	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
11103	chr1	85714501	85714700	+	0	NA	Intergenic	MER11B|LTR|ERVK	-6167	NM_001170670	54680		NM_017953	ENSG00000117174	ZNHIT6	BCD1|C1orf181|NY-BR-75	zinc finger HIT-type containing 6	protein-coding
164295	chr3	57644071	57644230	+	0	NA	intron (NM_152678, intron 11 of 19)	AluSx3|SINE|Alu	46361	NR_132369	106144532		NR_132369	ENSG00000272146	ARF4-AS1	-	ARF4 antisense RNA 1	ncRNA
153081	chr22	23376351	23376600	+	0	NA	intron (NR_037839, intron 2 of 6)	MLT1J1|LTR|ERVL-MaLR	5651	NR_037839	649264		NR_037839		CES5AP1	-	carboxylesterase 5A pseudogene 1	pseudo
46491	chr11	128341221	128342200	+	0	NA	Intergenic	Intergenic	132944	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
46805	chr11	130307951	130308250	+	0	NA	intron (NR_163264, intron 1 of 10)	Tigger3a|DNA|TcMar-Tigger	6612	NM_001301099	29068		NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
61040	chr13	48231571	48231930	+	0	NA	Intergenic	Intergenic	-1456	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
143080	chr20	21557271	21558230	+	0	NA	Intergenic	Intergenic	-12274	NR_109880	101929625		NR_109880		LINC01727	IRENA	long intergenic non-protein coding RNA 1727	ncRNA
29545	chr10	71270271	71270680	+	0	NA	intron (NM_170744, intron 1 of 16)	L2a|LINE|L2	-48778	NR_033413	55315		NM_018344	ENSG00000198246	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 member 3	protein-coding
117527	chr19	20423101	20423580	+	0	NA	intron (NR_036455, intron 1 of 2)	intron (NR_036455, intron 1 of 2)	1625	NR_036455	664701		NM_001039884		ZNF826P	ZNF826	zinc finger protein 826, pseudogene	pseudo
31567	chr10	97322271	97322830	+	0	NA	TTS (NM_005479)	TTS (NM_005479)	3279	NM_005479	10023		NM_005479	ENSG00000165879	FRAT1	-	FRAT regulator of WNT signaling pathway 1	protein-coding
199037	chr6	111427321	111427830	+	0	NA	intron (NM_001372078, intron 1 of 31)	L1M3f|LINE|L1	55643	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
106949	chr18	29610321	29610400	+	0	NA	Intergenic	MER66D|LTR|ERV1	-688550	NR_031684	100302131		NR_031684	ENSG00000283218	MIR302F	MIRN302F|hsa-mir-302f	microRNA 302f	ncRNA
236947	chrX	100895551	100895650	+	0	NA	Intergenic	Intergenic	-21241	NM_013955	27035		NM_007052	ENSG00000007952	NOX1	GP91-2|MOX1|NOH-1|NOH-1L|NOH1	NADPH oxidase 1	protein-coding
128278	chr2	54589401	54590030	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	31321	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
137635	chr2	197384271	197384830	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	50478	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
211703	chr7	106811801	106812340	+	0	NA	Intergenic	Intergenic	-53212	NM_001282427	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
22846	chr1	225459301	225459500	+	0	NA	Intergenic	Intergenic	-30545	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
132752	chr2	109759951	109761950	+	0	NA	intron (NM_001384362, intron 2 of 22).2	CpG	278	NM_001384363	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
224250	chr9	5899451	5899550	+	0	NA	intron (NM_005511, intron 3 of 4)	intron (NM_005511, intron 3 of 4)	8611	NM_005511	2315		NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
76985	chr15	78268871	78269230	+	0	NA	intron (NM_001130183, intron 1 of 6)	L2a|LINE|L2	2832	NM_001130183	55466		NM_018602	ENSG00000140403	DNAJA4	MST104|MSTP104|PRO1472	DnaJ heat shock protein family (Hsp40) member A4	protein-coding
48444	chr12	9707671	9708830	+	0	NA	Intergenic	HUERS-P2-int|LTR|ERV1	25049	NM_001267701	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
223730	chr8	144474651	144475630	+	0	NA	TTS (NM_001369769)	TTS (NM_001369769)	709	NM_003923	8928		NM_003923	ENSG00000160973	FOXH1	FAST-1|FAST1	forkhead box H1	protein-coding
55208	chr12	101790571	101791130	+	0	NA	intron (NM_024312, intron 2 of 20)	L2a|LINE|L2	40109	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
91063	chr17	3012121	3012380	+	0	NA	intron (NM_001100398, intron 16 of 23)	Charlie29a|DNA|hAT-Charlie	-46355	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
183829	chr5	86466251	86466350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-151641	NM_001867	1350		NM_001867	ENSG00000127184	COX7C	-	cytochrome c oxidase subunit 7C	protein-coding
112583	chr19	6665171	6665730	+	0	NA	intron (NM_172014, intron 3 of 3)	AluSx1|SINE|Alu	4708	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
215718	chr8	1695771	1696080	+	0	NA	intron (NM_001346810, intron 13 of 14)	intron (NM_001346810, intron 13 of 14)	67409	NR_134302	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
151469	chr21	46228201	46230300	+	0	NA	promoter-TSS (NM_001001438)	promoter-TSS (NM_001001438)	19	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
174356	chr4	38761501	38761880	+	0	NA	Intergenic	Intergenic	21300	NM_030956	81793		NM_030956	ENSG00000174123	TLR10	CD290	toll like receptor 10	protein-coding
141799	chr20	289671	291130	+	0	NA	intron (NM_153269, intron 1 of 10)	intron (NM_153269, intron 1 of 10)	350	NM_153269	140680		NM_080571	ENSG00000196476	C20orf96	dJ1103G7.2	chromosome 20 open reading frame 96	protein-coding
193205	chr6	29754121	29754580	+	0	NA	Intergenic	AluY|SINE|Alu	-3202	NR_001590	340198		NR_001590	ENSG00000235821	IFITM4P	dJ377H14.5	interferon induced transmembrane protein 4 pseudogene	pseudo
129942	chr2	73830701	73831800	+	0	NA	intron (NR_148668, intron 2 of 12)	intron (NR_148668, intron 2 of 12)	2283	NM_006463	10617		NM_006463	ENSG00000124356	STAMBP	AMSH|MICCAP	STAM binding protein	protein-coding
185189	chr5	119377521	119378150	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	21816	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
14527	chr1	144846501	144847150	+	0	NA	intron (NR_104189, intron 2 of 3).2	AluSx|SINE|Alu	128654	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
4995	chr1	24344201	24344400	+	0	NA	intron (NM_198173, intron 11 of 15)	MIRc|SINE|MIR	21260	NM_021180	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
114287	chr19	11624601	11625200	+	0	NA	Intergenic	HERVK3-int|LTR|ERVK	27417	NM_001290085	199692		NM_145295	ENSG00000198551	ZNF627	-	zinc finger protein 627	protein-coding
230216	chr9	127852401	127852600	+	0	NA	intron (NM_001114753, intron 1 of 14)	intron (NM_001114753, intron 1 of 14)	2158	NM_001114753	2022		NM_000118	ENSG00000106991	ENG	END|HHT1|ORW1	endoglin	protein-coding
209435	chr7	76389921	76390480	+	0	NA	exon (NM_080744, exon 11 of 11)	exon (NM_080744, exon 11 of 11)	-7322	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
92842	chr17	16214671	16216090	+	0	NA	5' UTR (NM_006311, exon 1 of 46)	5' UTR (NM_006311, exon 1 of 46)	154	NM_006311	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
202203	chr6	156719621	156720750	+	0	NA	Intergenic	CpG	-55841	NM_001371656	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
68691	chr14	90400921	90401350	+	0	NA	intron (NM_006888, intron 2 of 5)	intron (NM_006888, intron 2 of 5)	2885	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
131060	chr2	88624651	88624950	+	0	NA	5' UTR (NM_001313915, exon 1 of 17)	5' UTR (NM_001313915, exon 1 of 17)	129	NM_001313915	9451		NM_004836	ENSG00000172071	EIF2AK3	PEK|PERK|WRS	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding
34697	chr10	133402071	133402430	+	0	NA	intron (NM_138384, intron 8 of 10)	intron (NM_138384, intron 8 of 10)	8093	NM_138384	92170		NM_138384	ENSG00000148824	MTG1	GTP|GTPBP7	mitochondrial ribosome associated GTPase 1	protein-coding
69438	chr14	94145851	94146150	+	0	NA	Intergenic	Intergenic	-16396	NM_032036	83982		NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	interferon alpha inducible protein 27 like 2	protein-coding
2761	chr1	10690221	10690880	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	106096	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
212815	chr7	130417151	130417650	+	0	NA	intron (NM_018718, intron 2 of 10)	intron (NM_018718, intron 2 of 10)	23616	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
206042	chr7	27102651	27103030	+	0	NA	promoter-TSS (NM_006735)	promoter-TSS (NM_006735)	-157	NM_006735	3199		NM_006735	ENSG00000105996	HOXA2	HOX1K|MCOHI	homeobox A2	protein-coding
179576	chr4	185251001	185251830	+	0	NA	intron (NM_001378032, intron 2 of 19)	L1MB2|LINE|L1	41858	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
214084	chr7	143493621	143493930	+	0	NA	intron (NR_033897, intron 2 of 4)	intron (NR_033897, intron 2 of 4)	15902	NM_176883	259287		NM_176883	ENSG00000221855	TAS2R41	T2R41|T2R59	taste 2 receptor member 41	protein-coding
70653	chr14	102948721	102949630	+	0	NA	intron (NM_006035, intron 26 of 36)	intron (NM_006035, intron 26 of 36)	26512	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
221651	chr8	125940671	125940830	+	0	NA	TTS (NR_038446)	TTS (NR_038446)	10447	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
211604	chr7	105874121	105874550	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	2250	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
170648	chr3	187101451	187102330	+	0	NA	Intergenic	L1MA7|LINE|L1	37606	NM_052969	116832		NM_052969	ENSG00000163923	RPL39L	L39-2|RPL39L1	ribosomal protein L39 like	protein-coding
229192	chr9	114662201	114662680	+	0	NA	Intergenic	Intergenic	-4635	NM_001354645	105376230		NM_001354645	ENSG00000230054	TEX53	-	testis expressed 53	protein-coding
94578	chr17	29681971	29682450	+	0	NA	intron (NM_033389, intron 5 of 14)	intron (NM_033389, intron 5 of 14)	-60787	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
35403	chr11	1388271	1388430	+	0	NA	Intergenic	(TGCCCTC)n|Simple_repeat|Simple_repeat	-1584	NR_046331	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
153448	chr22	25131671	25131830	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	-19058	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
134509	chr2	143402371	143402730	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	273131	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
167550	chr3	129343151	129343250	+	0	NA	Intergenic	Intergenic	-26914	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
98119	chr17	45784921	45785580	+	0	NA	intron (NM_001303018, intron 1 of 10).3	CpG	930	NM_001303018	1394		NM_004382	ENSG00000120088	CRHR1	CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRHR|CRHR1L	corticotropin releasing hormone receptor 1	protein-coding
204507	chr7	4786371	4786930	+	0	NA	intron (NM_014855, intron 10 of 16)	intron (NM_014855, intron 10 of 16)	1989	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
161178	chr3	39126321	39126880	+	0	NA	intron (NM_145755, intron 12 of 28)	(AC)n|Simple_repeat|Simple_repeat	-11606	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
38426	chr11	45097901	45098280	+	0	NA	intron (NM_001359633, intron 2 of 7)	intron (NM_001359633, intron 2 of 7)	3931	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
139738	chr2	229849151	229849730	+	0	NA	intron (NM_001348327, intron 4 of 41)	intron (NM_001348327, intron 4 of 41)	72239	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
88031	chr16	81314101	81316350	+	0	NA	exon (NM_022041, exon 1 of 11)	exon (NM_022041, exon 1 of 11)	263	NM_022041	8139		NM_022041	ENSG00000261609	GAN	GAN1|GIG|KLHL16	gigaxonin	protein-coding
54220	chr12	79926851	79927180	+	0	NA	intron (NM_001143885, intron 2 of 25)	AluJo|SINE|Alu	7936	NM_001244992	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
136197	chr2	174564201	174564400	+	0	NA	intron (NM_001375839, intron 6 of 6)	intron (NM_001375839, intron 6 of 6)	-6228	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
78216	chr15	90642271	90642430	+	0	NA	3' UTR (NM_022769, exon 15 of 15)	3' UTR (NM_022769, exon 15 of 15)	-17884	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
206199	chr7	28200001	28200940	+	0	NA	intron (NR_034097, intron 2 of 3)	intron (NR_034097, intron 2 of 3)	-19675	NM_175061	221895		NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
148697	chr21	6371001	6371600	+	0	NA	Intergenic	Intergenic	88782	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
229049	chr9	114336471	114336630	+	0	NA	3' UTR (NM_001317950, exon 22 of 22)	3' UTR (NM_001317950, exon 22 of 22)	6681	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
211954	chr7	112486571	112486930	+	0	NA	intron (NM_001134468, intron 2 of 3)	AluY|SINE|Alu	5759	NM_182597	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
221901	chr8	128631601	128631800	+	0	NA	Intergenic	MER117|DNA|hAT-Charlie	-67021	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
169143	chr3	156443621	156443880	+	0	NA	intron (NR_046618, intron 2 of 2)	(AC)n|Simple_repeat|Simple_repeat	3186	NR_046618	100874084		NR_046618	ENSG00000242370	KCNAB1-AS1	-	KCNAB1 antisense RNA 1	ncRNA
56099	chr12	110704771	110704930	+	0	NA	Intergenic	Intergenic	-15073	NM_001256413	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
40467	chr11	64228551	64228650	+	0	NA	intron (NM_032344, intron 3 of 5)	AluY|SINE|Alu	-1681	NM_005528	3338		NM_005528	ENSG00000110011	DNAJC4	DANJC4|HSPF2|MCG18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding
169392	chr3	160559721	160560180	+	0	NA	intron (NM_002268, intron 1 of 16)	intron (NM_002268, intron 1 of 16)	5621	NM_002268	3840		NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
210819	chr7	100883551	100883730	+	0	NA	intron (NM_015908, intron 5 of 19)	intron (NM_015908, intron 5 of 19)	6075	NM_001015072	402682		NM_001015072	ENSG00000176125	UFSP1	UFSP	UFM1 specific peptidase 1 (inactive)	protein-coding
123613	chr19	54521371	54522000	+	0	NA	Intergenic	Intergenic	-11007	NR_104095	90011		NM_033206	ENSG00000290933	KIR3DX1	KIR3DL0|LENG12	killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)	pseudo
195478	chr6	37094401	37094630	+	0	NA	Intergenic	Intergenic	-75637	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
106588	chr18	22172551	22172650	+	0	NA	intron (NM_005257, intron 2 of 6)	intron (NM_005257, intron 2 of 6)	3011	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
9631	chr1	52523051	52523630	+	0	NA	intron (NM_015269, intron 2 of 29)	AluSz|SINE|Alu	29750	NM_015269	23318		NM_015269	ENSG00000134744	TUT4	PAPD3|TENT3A|ZCCHC11	terminal uridylyl transferase 4	protein-coding
136222	chr2	174587421	174588330	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	9929	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
190532	chr5	180650101	180650430	+	0	NA	promoter-TSS (NM_002020)	promoter-TSS (NM_002020)	-665	NM_002020	2324		NM_002020	ENSG00000037280	FLT4	CHTD7|FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3	fms related receptor tyrosine kinase 4	protein-coding
29526	chr10	70840121	70840380	+	0	NA	intron (NM_003901, intron 2 of 14)	MIR3|SINE|MIR	24302	NM_003901	8879		NM_003901	ENSG00000166224	SGPL1	NPHS14|RENI|S1PL|SPL	sphingosine-1-phosphate lyase 1	protein-coding
204886	chr7	6031871	6032700	+	0	NA	intron (NM_001271700, intron 1 of 2)	intron (NM_001271700, intron 1 of 2)	909	NM_001271700	100310846		NM_001271700	ENSG00000157999	ANKRD61	-	ankyrin repeat domain 61	protein-coding
130386	chr2	85311401	85312000	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	16289	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
41782	chr11	66848901	66849400	+	0	NA	intron (NM_022172, intron 20 of 20)	intron (NM_022172, intron 20 of 20)	5709	NM_001032279	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
229343	chr9	120917571	120918280	+	0	NA	intron (NM_005658, intron 3 of 7)	MLT1B|LTR|ERVL-MaLR	-3353	NM_001190947	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
206924	chr7	38222501	38223100	+	0	NA	intron (NM_032016, intron 7 of 8)	intron (NM_032016, intron 7 of 8)	44555	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
214317	chr7	149261551	149262950	+	0	NA	promoter-TSS (NM_001195220)	promoter-TSS (NM_001195220)	54	NR_144366	100289678		NM_001195220	ENSG00000204946	ZNF783	-	zinc finger protein 783	protein-coding
143746	chr20	32365351	32366500	+	0	NA	intron (NM_001363734, intron 1 of 10)	AluSx|SINE|Alu	6860	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
73978	chr15	51973001	51973600	+	0	NA	Intergenic	Intergenic	-1499	NM_001286430	123169		NM_138792	ENSG00000166477	LEO1	RDL	LEO1 homolog, Paf1/RNA polymerase II complex component	protein-coding
107131	chr18	35114801	35115000	+	0	NA	intron (NR_046177, intron 4 of 6)	intron (NR_046177, intron 4 of 6)	73487	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
52817	chr12	56999001	56999430	+	0	NA	TTS (NM_007264)	TTS (NM_007264)	4723	NM_007264	11318		NM_007264	ENSG00000166856	GPR182	7TMR|ADMR|AM-R|AMR|G10D|L1-R|gamrh|hrhAMR	G protein-coupled receptor 182	protein-coding
162882	chr3	49380121	49380650	+	0	NA	intron (NM_001313943, intron 1 of 5)	MLT1J|LTR|ERVL-MaLR	-21785	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
199626	chr6	119653551	119653650	+	0	NA	intron (NR_134600, intron 2 of 3)	MLT1I|LTR|ERVL-MaLR	103792	NR_134600	105377975		NR_134600		LOC105377975	-	uncharacterized LOC105377975	ncRNA
221378	chr8	123391351	123392030	+	0	NA	intron (NM_014109, intron 1 of 27)	intron (NM_014109, intron 1 of 27)	4757	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
228937	chr9	113339721	113340750	+	0	NA	promoter-TSS (NM_001012361)	promoter-TSS (NM_001012361)	40	NM_001006615	114987		NM_145241	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
229227	chr9	114921471	114922080	+	0	NA	intron (NM_001244, intron 1 of 3)	intron (NM_001244, intron 1 of 3)	8816	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
56127	chr12	110887571	110888530	+	0	NA	intron (NM_152591, intron 8 of 11)	MER102a|DNA|hAT-Charlie	32529	NM_000432	4633		NM_000432	ENSG00000111245	MYL2	CMH10|MFM12|MLC-2|MLC-2s/v|MLC-2v|MLC2	myosin light chain 2	protein-coding
123714	chr19	55041121	55042480	+	0	NA	Intergenic	Intergenic	-3536	NM_001256017	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
216208	chr8	11901901	11902700	+	0	NA	Intergenic	Intergenic	-34213	NM_001384723	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
178151	chr4	142335871	142336600	+	0	NA	intron (NM_001385334, intron 6 of 24)	LTR27E|LTR|ERV1	-30291	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
52034	chr12	54003071	54003530	+	0	NA	TTS (NM_006897)	TTS (NM_006897)	3139	NM_006897	3225		NM_006897	ENSG00000180806	HOXC9	HOX3|HOX3B	homeobox C9	protein-coding
36804	chr11	9612551	9612650	+	0	NA	Intergenic	AluSx|SINE|Alu	37913	NM_001143976	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
99522	chr17	50343171	50343330	+	0	NA	Intergenic	Intergenic	-2876	NM_022167	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
142108	chr20	2656421	2656900	+	0	NA	promoter-TSS (NR_002739)	promoter-TSS (NR_002739)	36	NR_002739	26793		NR_002739	ENSG00000229686	SNORD56	RNU56|U56	small nucleolar RNA, C/D box 56	snoRNA
84753	chr16	30966871	30967480	+	0	NA	intron (NM_014712, intron 9 of 18)	AluSx1|SINE|Alu	9421	NM_014712	9739		NM_014712	ENSG00000099381	SETD1A	EPEDD|EPEO2|KMT2F|NEDSID|Set1|Set1A	SET domain containing 1A, histone lysine methyltransferase	protein-coding
129024	chr2	64913201	64913480	+	0	NA	intron (NR_036586, intron 1 of 2)	intron (NR_036586, intron 1 of 2)	19107	NR_036586	400958		NR_036586		LINC02245	-	long intergenic non-protein coding RNA 2245	ncRNA
89346	chr16	88760701	88760900	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	18033	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
70334	chr14	101843471	101844250	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	33997	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
3548	chr1	16144021	16144280	+	0	NA	intron (NM_004431, intron 3 of 16)	(GGAG)n|Simple_repeat|Simple_repeat	11919	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
159215	chr3	12898301	12898650	+	0	NA	3' UTR (NM_001134382, exon 14 of 14)	3' UTR (NM_001134382, exon 14 of 14)	-13264	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
233662	chrX	1049671	1050250	+	0	NA	Intergenic	Intergenic	162689	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
232031	chr9	133401651	133401950	+	0	NA	exon (NM_153710, exon 13 of 18)	exon (NM_153710, exon 13 of 18)	-12537	NR_024514	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
119295	chr19	39825801	39826500	+	0	NA	intron (NM_006484, intron 11 of 11)	intron (NM_006484, intron 11 of 11)	3652	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
95601	chr17	37488551	37490520	+	0	NA	promoter-TSS (NM_007026)	promoter-TSS (NM_007026)	-356	NM_007026	11072		NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
91609	chr17	5355051	5355150	+	0	NA	intron (NM_001083585, intron 8 of 16)	L2|LINE|L2	-64541	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
73741	chr15	45253451	45253630	+	0	NA	intron (NM_004212, intron 3 of 17)	intron (NM_004212, intron 3 of 17)	1306	NM_004212	9153		NM_004212	ENSG00000137860	SLC28A2	CNT2|HCNT2|HsT17153|SPNT1	solute carrier family 28 member 2	protein-coding
62946	chr13	111404001	111404200	+	0	NA	Intergenic	Intergenic	83458	NM_152324	121793		NM_152324	ENSG00000153495	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
41991	chr11	67385551	67385850	+	0	NA	intron (NR_024469, intron 2 of 3)	L2a|LINE|L2	-6286	NM_004584	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
45999	chr11	121544301	121544500	+	0	NA	intron (NM_003105, intron 13 of 47)	intron (NM_003105, intron 13 of 47)	-62611	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
170960	chr3	194466071	194466630	+	0	NA	intron (NR_164666, intron 2 of 32)	L1MEc|LINE|L1	1889	NM_024524	79572		NM_024524	ENSG00000133657	ATP13A3	AFURS1|PPH5	ATPase 13A3	protein-coding
87414	chr16	70664471	70664830	+	0	NA	exon (NM_138383, exon 14 of 15)	exon (NM_138383, exon 14 of 15)	21403	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
232304	chr9	134475721	134476380	+	0	NA	Intergenic	Intergenic	69490	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
8184	chr1	39566071	39566230	+	0	NA	intron (NM_003819, intron 7 of 15)	intron (NM_003819, intron 7 of 15)	1080	NR_125979	101929516		NR_125979		PABPC4-AS1	-	PABPC4 antisense RNA 1	ncRNA
47630	chr12	6190121	6190780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-9496	NM_001330312	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
229076	chr9	114356851	114357350	+	0	NA	intron (NM_001317952, intron 11 of 20)	intron (NM_001317952, intron 11 of 20)	27231	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
84273	chr16	30062651	30062950	+	0	NA	intron (NM_001365304, intron 4 of 13)	AluSq2|SINE|Alu	-1479	NM_184043	226		NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase, fructose-bisphosphate A	protein-coding
20935	chr1	202205201	202205530	+	0	NA	intron (NM_021636, intron 1 of 17)	(CA)n|Simple_repeat|Simple_repeat	1653	NM_021636	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
31523	chr10	96831651	96832400	+	0	NA	promoter-TSS (NM_001346516)	promoter-TSS (NM_001346516)	-273	NM_001170765	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
64724	chr14	34461521	34463650	+	0	NA	promoter-TSS (NM_138288)	promoter-TSS (NM_138288)	-345	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
132880	chr2	111194951	111195480	+	0	NA	TTS (NR_136164)	TTS (NR_136164)	74301	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
37057	chr11	12235521	12236730	+	0	NA	intron (NR_144415, intron 14 of 26)	intron (NR_144415, intron 14 of 26)	-50775	NM_032867	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
58708	chr12	132567501	132567850	+	0	NA	intron (NM_001382740, intron 6 of 11)	intron (NM_001382740, intron 6 of 11)	-14322	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
165641	chr3	101802301	101802500	+	0	NA	intron (NR_145993, intron 5 of 6)	FAM|SINE|Alu	22736	NM_001348998	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
97684	chr17	44307251	44307350	+	0	NA	non-coding (NR_110802, exon 2 of 4)	non-coding (NR_110802, exon 2 of 4)	1131	NR_110802	101926996		NR_110802		RUNDC3A-AS1	-	RUNDC3A antisense RNA 1	ncRNA
179549	chr4	185127421	185127880	+	0	NA	Intergenic	CpG	-15616	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
218065	chr8	38914271	38914750	+	0	NA	intron (NM_021623, intron 1 of 11)	intron (NM_021623, intron 1 of 11)	13164	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
84086	chr16	29610051	29610600	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	3392	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
166220	chr3	112087771	112088030	+	0	NA	intron (NM_024616, intron 1 of 5)	intron (NM_024616, intron 1 of 5)	1511	NM_024616	79669		NM_024616	ENSG00000114529	C3orf52	HYPT15|TTMP	chromosome 3 open reading frame 52	protein-coding
56329	chr12	112902121	112902650	+	0	NA	Intergenic	MIR3|SINE|MIR	-4392	NM_002534	4938		NM_002534	ENSG00000089127	OAS1	E18/E16|IFI-4|IMD100|OIAS|OIASI	2'-5'-oligoadenylate synthetase 1	protein-coding
145207	chr20	38899851	38900150	+	0	NA	intron (NM_001172735, intron 4 of 9)	AluSx1|SINE|Alu	-26417	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
205480	chr7	17463801	17464000	+	0	NA	intron (NR_110013, intron 3 of 3)	intron (NR_110013, intron 3 of 3)	88983	NR_110014	102659288		NR_110014		LINC02888	KCCAT333	long intergenic non-protein coding RNA 2888	ncRNA
2996	chr1	12040501	12040700	+	0	NA	Intergenic	LTR64|LTR|ERV1	11442	NR_106787	102466982		NR_106787	ENSG00000276869	MIR6729	hsa-mir-6729	microRNA 6729	ncRNA
139390	chr2	222297021	222297480	+	0	NA	promoter-TSS (NR_161172)	promoter-TSS (NR_161172)	-897	NR_161172	151278		NM_153038	ENSG00000163081	CCDC140	-	CCDC140 long non-coding RNA	ncRNA
75716	chr15	68113371	68113750	+	0	NA	intron (NM_001320687, intron 3 of 14)	intron (NM_001320687, intron 3 of 14)	58984	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
24035	chr1	235279551	235280050	+	0	NA	intron (NM_016374, intron 2 of 23)	MER68|LTR|ERVL	-47416	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
59077	chr13	20905701	20906480	+	0	NA	Intergenic	AluJo|SINE|Alu	-3316	NM_022459	64328		NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
55186	chr12	100987971	100988130	+	0	NA	intron (NM_001286615, intron 8 of 27)	intron (NM_001286615, intron 8 of 27)	86404	NM_001286616	121601		NM_178826	ENSG00000151572	ANO4	TMEM16D	anoctamin 4	protein-coding
223398	chr8	143922851	143923200	+	0	NA	exon (NM_000445, exon 32 of 33)	exon (NM_000445, exon 32 of 33)	16572	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
238598	chrX	153910801	153911250	+	0	NA	intron (NM_001164741, intron 14 of 22)	intron (NM_001164741, intron 14 of 22)	6311	NM_001146151	554		NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|NDI1|V2R	arginine vasopressin receptor 2	protein-coding
190655	chr5	181240751	181240850	+	0	NA	intron (NM_006098, intron 3 of 7)	AluJr|SINE|Alu	1089	NR_002592	619571		NR_002592	ENSG00000272296	SNORD96A	U96A	small nucleolar RNA, C/D box 96A	snoRNA
86202	chr16	57997421	57997680	+	0	NA	exon (NM_001384367, exon 3 of 3)	exon (NM_001384367, exon 3 of 3)	-2053	NM_001330568	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
155087	chr22	37565121	37565480	+	0	NA	intron (NM_152243, intron 1 of 2)	AluJr|SINE|Alu	4820	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
163166	chr3	50169801	50170150	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	10956	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
186761	chr5	139327401	139327880	+	0	NA	intron (NM_199189, intron 17 of 17)	AluSp|SINE|Alu	-14192	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
11693	chr1	91850771	91851130	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	35201	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
116838	chr19	18585851	18586150	+	0	NA	Intergenic	AluY|SINE|Alu	-2798	NM_001100419	55049		NM_017967	ENSG00000006015	REX1BD	C19orf60	required for excision 1-B domain containing	protein-coding
91470	chr17	4881801	4882680	+	0	NA	intron (NM_015716, intron 4 of 30)	intron (NM_015716, intron 4 of 30)	-17296	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
80986	chr16	3966701	3967100	+	0	NA	exon (NM_001116, exon 11 of 11)	exon (NM_001116, exon 11 of 11)	-16456	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
190905	chr6	2790571	2790750	+	0	NA	Intergenic	LTR33|LTR|ERVL	-20284	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
197862	chr6	89080211	89081000	+	0	NA	promoter-TSS (NM_006813)	promoter-TSS (NM_006813)	-146	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
186490	chr5	138212871	138214050	+	0	NA	promoter-TSS (NM_004661)	promoter-TSS (NM_004661)	-137	NM_004661	8697		NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
214536	chr7	150516971	150517730	+	0	NA	intron (NM_153236, intron 1 of 1)	L1MC5|LINE|L1	2478	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
77822	chr15	88629871	88630850	+	0	NA	3' UTR (NM_022767, exon 4 of 4)	3' UTR (NM_022767, exon 4 of 4)	-5272	NR_130134	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
58342	chr12	131540051	131540150	+	0	NA	Intergenic	Intergenic	108021	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
233916	chrX	1673121	1673630	+	0	NA	Intergenic	(AACAAA)n|Simple_repeat|Simple_repeat	58242	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
20457	chr1	198557971	198558200	+	0	NA	Intergenic	Intergenic	-17140	NM_133326	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
214811	chr7	151206151	151206250	+	0	NA	promoter-TSS (NM_001304419)	promoter-TSS (NM_001304419)	-704	NM_001304419	392843		NM_001304419	ENSG00000278685	IQCA1L	IQCA1P1	IQ motif containing with AAA domain 1 like	protein-coding
106976	chr18	31983871	31984400	+	0	NA	Intergenic	Intergenic	-34690	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
122470	chr19	49535651	49535750	+	0	NA	intron (NM_020650, intron 3 of 6)	AluSz6|SINE|Alu	7697	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
77993	chr15	89495951	89496530	+	0	NA	intron (NM_001321041, intron 1 of 10)	CpG	343	NM_001321041	51458		NM_016321	ENSG00000140519	RHCG	C15orf6|PDRC2|RHGK|SLC42A3	Rh family C glycoprotein	protein-coding
184943	chr5	112995701	112996430	+	0	NA	intron (NR_038352, intron 2 of 8)	MLT1A|LTR|ERVL-MaLR	19267	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
149763	chr21	34722671	34722930	+	0	NA	Intergenic	Intergenic	14382	NR_024351	54064		NR_024351	ENSG00000230978	LINC00160	C21orf52|NCRNA00160	long intergenic non-protein coding RNA 160	ncRNA
159493	chr3	14180821	14181280	+	0	NA	intron (NM_014463, intron 1 of 3)	intron (NM_014463, intron 1 of 3)	2233	NM_014463	27258		NM_014463	ENSG00000170860	LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
67733	chr14	73566201	73566950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1045	NR_046028	10965		NM_006821	ENSG00000119673	ACOT2	CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128	acyl-CoA thioesterase 2	protein-coding
130501	chr2	85592051	85592150	+	0	NA	intron (NM_006634, intron 2 of 2)	AluJb|SINE|Alu	-3645	NM_016494	51255		NM_016494	ENSG00000168894	RNF181	HSPC238	ring finger protein 181	protein-coding
38648	chr11	46371221	46371480	+	0	NA	exon (NM_001105540, exon 8 of 32)	exon (NM_001105540, exon 8 of 32)	-5052	NR_039837	100616368		NR_039837	ENSG00000264102	MIR4688	mir-4688	microRNA 4688	ncRNA
119413	chr19	40274521	40275200	+	0	NA	intron (NM_001243027, intron 1 of 13)	L2a|LINE|L2	7781	NR_030371	693226		NR_030371	ENSG00000207631	MIR641	MIRN641|hsa-mir-641|mir-641	microRNA 641	ncRNA
146560	chr20	50007101	50007300	+	0	NA	Intergenic	Intergenic	24220	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
124447	chr19	58505471	58505630	+	0	NA	intron (NM_001321196, intron 3 of 9)	intron (NM_001321196, intron 3 of 9)	6442	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
131119	chr2	90323751	90324680	+	0	NA	Intergenic	CpG	-686308	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
201117	chr6	142871771	142873330	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	72626	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
192659	chr6	26195071	26196300	+	0	NA	Intergenic	Intergenic	1601	NM_001376937	8351		NM_003530	ENSG00000197409	H3C4	H3/b|H3C1|H3C10|H3C11|H3C12|H3C2|H3C3|H3C6|H3C7|H3C8|H3FB|HIST1H3D	H3 clustered histone 4	protein-coding
238566	chrX	153816721	153817580	+	0	NA	intron (NM_032512, intron 1 of 7)	L1MB7|LINE|L1	12809	NM_001303516	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
223366	chr8	143876751	143877080	+	0	NA	intron (NM_031308, intron 1 of 1)	intron (NM_031308, intron 1 of 1)	1552	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
17239	chr1	156325521	156325980	+	0	NA	intron (NR_036564, intron 6 of 14)	AluSx|SINE|Alu	-11564	NM_144627	128229		NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding
64212	chr14	23057271	23057800	+	0	NA	promoter-TSS (NM_022478)	promoter-TSS (NM_022478)	3	NM_144985	64403		NM_022478	ENSG00000139880	CDH24	CDH11L	cadherin 24	protein-coding
30374	chr10	78032371	78032800	+	0	NA	Intergenic	Intergenic	-1175	NM_001142284	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
100664	chr17	63738071	63738230	+	0	NA	intron (NM_001165970, intron 1 of 10)	AluSg|SINE|Alu	3649	NR_156741	92335		NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk	STE20 related adaptor alpha	protein-coding
98317	chr17	46254751	46254930	+	0	NA	Intergenic	AluSx|SINE|Alu	-29473	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
117684	chr19	27775521	27775980	+	0	NA	Intergenic	Intergenic	-17681	NR_146735	101927151		NR_110687	ENSG00000267575	LINC02987	-	long intergenic non-protein coding RNA 2987	ncRNA
163198	chr3	50225721	50226700	+	0	NA	promoter-TSS (NM_001282619)	promoter-TSS (NM_001282619)	-858	NM_001282620	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
173260	chr4	7040301	7041130	+	0	NA	TTS (NM_153376)	TTS (NM_153376)	2286	NM_153376	257236		NM_153376	ENSG00000173013	CFAP184	CCDC96	cilia and flagella associated protein 184	protein-coding
138189	chr2	202657471	202658230	+	0	NA	intron (NM_173511, intron 1 of 7)	L1MEf|LINE|L1	22881	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
71688	chr15	20104971	20105330	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-177594	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
208187	chr7	64903001	64904530	+	0	NA	intron (NM_021148, intron 1 of 3)	MER57E3|LTR|ERV1	492	NM_001385650	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
146689	chr20	50533351	50533650	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	23117	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
115394	chr19	15273921	15274180	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	6401	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
192909	chr6	27609351	27609450	+	0	NA	Intergenic	LTR41|LTR|ERVL	-84635	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
155314	chr22	38204151	38204600	+	0	NA	intron (NM_001161573, intron 1 of 2)	L2c|LINE|L2	1355	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
162750	chr3	49055271	49055630	+	0	NA	intron (NM_001320580, intron 4 of 10)	AluJo|SINE|Alu	-26052	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
83910	chr16	28998171	28999050	+	0	NA	Intergenic	L2b|LINE|L2	13558	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
179988	chr5	891201	891400	+	0	NA	intron (NM_001375861, intron 2 of 16)	intron (NM_001375861, intron 2 of 16)	1222	NR_134296								
156561	chr22	41447901	41449280	+	0	NA	Intergenic	Intergenic	-1789	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
17988	chr1	160515851	160516150	+	0	NA	intron (NM_001184714, intron 1 of 7)	L1PA10|LINE|L1	7255	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
127981	chr2	46913771	46914280	+	0	NA	intron (NM_001171506, intron 1 of 4)	intron (NM_001171506, intron 1 of 4)	1781	NM_001171509	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
117783	chr19	29809471	29810680	+	0	NA	Intergenic	MIRb|SINE|MIR	-1916	NM_001322261	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
100763	chr17	63985051	63986250	+	0	NA	Intergenic	Intergenic	-12701	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
39062	chr11	47974851	47974950	+	0	NA	Intergenic	Intergenic	-5659	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
120682	chr19	45125871	45126390	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	32951	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
235433	chrX	45843471	45843700	+	0	NA	Intergenic	Intergenic	7905	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
5812	chr1	26601421	26601680	+	0	NA	Intergenic	AluJb|SINE|Alu	47008	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
234035	chrX	3843301	3844330	+	0	NA	promoter-TSS (NR_034031)	promoter-TSS (NR_034031)	79	NR_034031	389906		NM_001045547	ENSG00000285756	LOC389906	-	zinc finger protein 839 pseudogene	pseudo
143779	chr20	32442001	32442200	+	0	NA	TTS (NM_001256798)	TTS (NM_001256798)	41390	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
137552	chr2	197234901	197235100	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	37009	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
33938	chr10	124617151	124617250	+	0	NA	Intergenic	Intergenic	-86828	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
146717	chr20	50590321	50590850	+	0	NA	intron (NM_080829, intron 19 of 21)	intron (NM_080829, intron 19 of 21)	4799	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
6986	chr1	31814001	31814650	+	0	NA	exon (NM_001281987, exon 2 of 16)	exon (NM_001281987, exon 2 of 16)	1726	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
176126	chr4	83102851	83102950	+	0	NA	intron (NM_016619, intron 3 of 4)	AluY|SINE|Alu	6989	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
237261	chrX	110310821	110311480	+	0	NA	intron (NM_001171689, intron 3 of 7)	intron (NM_001171689, intron 3 of 7)	6935	NM_015365	9949		NM_015365	ENSG00000101935	AMMECR1	AMMERC1|MFHIEN	AMMECR nuclear protein 1	protein-coding
149664	chr21	33562601	33562800	+	0	NA	intron (NM_138927, intron 6 of 11)	intron (NM_138927, intron 6 of 11)	12038	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
116467	chr19	18093501	18094330	+	0	NA	intron (NM_001290024, intron 1 of 17)	intron (NM_001290024, intron 1 of 17)	-3863	NM_015016	23031		NM_015016	ENSG00000099308	MAST3	DEE108	microtubule associated serine/threonine kinase 3	protein-coding
60835	chr13	45419951	45421830	+	0	NA	TTS (NR_047031)	TTS (NR_047031)	-2435	NM_001286806	253512		NM_001010875	ENSG00000174032	SLC25A30	KMCP1	solute carrier family 25 member 30	protein-coding
102833	chr17	76467421	76467880	+	0	NA	promoter-TSS (NM_001088)	promoter-TSS (NM_001088)	47	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
26384	chr10	16891351	16891930	+	0	NA	intron (NM_001081, intron 54 of 66)	L2|LINE|L2	-74186	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
30	chr1	178671	180050	+	0	NA	Intergenic	Intergenic	-3028	NR_148357	102725121		NR_148357		DDX11L17	-	DEAD/H-box helicase 11 like 17 (pseudogene)	pseudo
61366	chr13	51286221	51286600	+	0	NA	Intergenic	Intergenic	-54622	NM_001101320	647174		NM_001101320	ENSG00000253309	SERPINE3	-	serpin family E member 3	protein-coding
161062	chr3	38032451	38032550	+	0	NA	Intergenic	Intergenic	-2858	NM_006225	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
43217	chr11	75435321	75435580	+	0	NA	3' UTR (NM_001351168, exon 18 of 18)	3' UTR (NM_001351168, exon 18 of 18)	-4821	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
33289	chr10	114631651	114632430	+	0	NA	5' UTR (NM_001352440, exon 1 of 21)	5' UTR (NM_001352440, exon 1 of 21)	357	NM_001352441	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
167507	chr3	129238721	129239380	+	0	NA	Intergenic	AluJr|SINE|Alu	-10556	NM_016128	22820		NM_016128	ENSG00000181789	COPG1	COPG	COPI coat complex subunit gamma 1	protein-coding
114051	chr19	10979971	10980350	+	0	NA	intron (NM_001374457, intron 1 of 33)	intron (NM_001374457, intron 1 of 33)	-3964	NM_001128845	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
158991	chr3	10299471	10300230	+	0	NA	Intergenic	Intergenic	-6903	NM_001302823	51738		NM_016362	ENSG00000157017	GHRL	MTLRP	ghrelin and obestatin prepropeptide	protein-coding
204550	chr7	5045321	5046550	+	0	NA	promoter-TSS (NM_021163)	promoter-TSS (NM_021163)	75	NM_001204456	57786		NM_021163	ENSG00000146587	RBAK	ZNF769	RB associated KRAB zinc finger	protein-coding
196403	chr6	43334551	43334730	+	0	NA	Intergenic	Intergenic	-25814	NM_206922	401262		NM_206922	ENSG00000146215	CRIP3	CRP-3|TLP|TLP-A|h6LIMo	cysteine rich protein 3	protein-coding
124004	chr19	55458651	55458950	+	0	NA	intron (NM_024710, intron 1 of 5)	AluSg|SINE|Alu	2842	NM_001136201	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
226318	chr9	69012771	69013330	+	0	NA	exon (NM_002732, exon 1 of 1)	exon (NM_002732, exon 1 of 1)	1063	NM_002732	5568		NM_002732	ENSG00000165059	PRKACG	BDPLT19|KAPG|PKACg	protein kinase cAMP-activated catalytic subunit gamma	protein-coding
118911	chr19	38723001	38723530	+	0	NA	intron (NM_004924, intron 12 of 20)	intron (NM_004924, intron 12 of 20)	21209	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
108578	chr18	75070671	75071880	+	0	NA	Intergenic	Intergenic	134238	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
67105	chr14	68363721	68363980	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	264937	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
66042	chr14	58299101	58300100	+	0	NA	intron (NM_023000, intron 1 of 23)	CpG	1045	NM_002892	5926		NM_002892	ENSG00000032219	ARID4A	RBBP-1|RBBP1|RBP-1|RBP1	AT-rich interaction domain 4A	protein-coding
238762	chrX	154352651	154353000	+	0	NA	exon (NM_001456, exon 38 of 47)	exon (NM_001456, exon 38 of 47)	21809	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
57953	chr12	123750271	123750630	+	0	NA	intron (NM_012463, intron 15 of 19)	intron (NM_012463, intron 15 of 19)	-11851	NM_001372106	196385		NM_207437	ENSG00000197653	DNAH10	SPGF56	dynein axonemal heavy chain 10	protein-coding
12245	chr1	100434151	100435180	+	0	NA	intron (NM_001319210, intron 5 of 16)	L2c|LINE|L2	82159	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
121684	chr19	47514401	47516030	+	0	NA	promoter-TSS (NM_003827)	promoter-TSS (NM_003827)	-152	NR_038456	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
3684	chr1	16508771	16509930	+	0	NA	Intergenic	MER87|LTR|ERV1	4935	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
1875	chr1	6426871	6427230	+	0	NA	intron (NM_031475, intron 1 of 12)	intron (NM_031475, intron 1 of 12)	2274	NM_001367474	83715		NM_031475	ENSG00000187017	ESPN	DFNB36|LP2654|USH1M	espin	protein-coding
125890	chr2	24723721	24724180	+	0	NA	intron (NM_147233, intron 12 of 20)	intron (NM_147233, intron 12 of 20)	-69165	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
124331	chr19	58193171	58193530	+	0	NA	intron (NM_133502, intron 4 of 7)	AluY|SINE|Alu	10289	NM_133502	10782		NM_016324	ENSG00000171606	ZNF274	HFB101|ZF2|ZKSCAN19|ZSCAN51	zinc finger protein 274	protein-coding
47915	chr12	6769201	6770030	+	0	NA	exon (NM_002824, exon 2 of 5)	exon (NM_002824, exon 2 of 5)	-2905	NM_002286	3902		NM_002286	ENSG00000089692	LAG3	CD223	lymphocyte activating 3	protein-coding
153838	chr22	30047251	30047780	+	0	NA	intron (NR_110541, intron 2 of 4)	LTR50|LTR|ERVL	32742	NR_110541	101929664		NR_110541	ENSG00000227117	HORMAD2-AS1	MTMR3-AS1	HORMAD2 and MTMR3 antisense RNA 1	ncRNA
128614	chr2	61174801	61175000	+	0	NA	Intergenic	Intergenic	-2518	NR_152211	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
15393	chr1	150224971	150225130	+	0	NA	intron (NM_001280559, intron 5 of 6)	intron (NM_001280559, intron 5 of 6)	9628	NM_001136479	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
67498	chr14	70941171	70942150	+	0	NA	intron (NM_014982, intron 1 of 35)	L1PA5|LINE|L1	34201	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
20610	chr1	198932721	198932980	+	0	NA	intron (NR_040073, intron 1 of 2)	intron (NR_040073, intron 1 of 2)	4579	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
66554	chr14	62098771	62099130	+	0	NA	intron (NM_001367652, intron 6 of 6)	L2b|LINE|L2	-18407	NR_015358	646113		NM_001039785		LINC00643	-	long intergenic non-protein coding RNA 643	ncRNA
183410	chr5	78151851	78152030	+	0	NA	intron (NM_003664, intron 14 of 26)	(CCTCC)n|Simple_repeat|Simple_repeat	142758	NM_003664	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
111981	chr19	4877921	4878180	+	0	NA	Intergenic	Intergenic	-10383	NM_001164189	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
52618	chr12	56259601	56260280	+	0	NA	Intergenic	AluYf1|SINE|Alu	-1556	NM_173595	283373		NM_173595	ENSG00000139645	ANKRD52	ANKRD33	ankyrin repeat domain 52	protein-coding
175401	chr4	70839401	70841130	+	0	NA	promoter-TSS (NM_002092)	promoter-TSS (NM_002092)	-375	NM_002092	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
236996	chrX	101655571	101655800	+	0	NA	3' UTR (NM_014782, exon 5 of 5)	3' UTR (NM_014782, exon 5 of 5)	4165	NM_001282231	9823		NM_014782	ENSG00000184867	ARMCX2	ALEX2|GASP9	armadillo repeat containing X-linked 2	protein-coding
13459	chr1	114510101	114512250	+	0	NA	promoter-TSS (NM_015906)	promoter-TSS (NM_015906)	28	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
160064	chr3	18678121	18678430	+	0	NA	Intergenic	L2a|LINE|L2	-232683	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
148990	chr21	14215721	14216700	+	0	NA	promoter-TSS (NR_135311)	promoter-TSS (NR_135311)	53	NM_144770	54033		NM_144770	ENSG00000185272	RBM11	-	RNA binding motif protein 11	protein-coding
81804	chr16	11545701	11545900	+	0	NA	Intergenic	Intergenic	-18553	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
136146	chr2	174254321	174254780	+	0	NA	Intergenic	AluJb|SINE|Alu	-6018	NM_013341	29789		NM_013341	ENSG00000138430	OLA1	DOC45|GBP45|GTBP9|GTPBP9|PTD004	Obg like ATPase 1	protein-coding
29655	chr10	71896401	71897130	+	0	NA	Intergenic	AluJo|SINE|Alu	-45514	NM_001042466	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
187574	chr5	142798191	142799150	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	27443	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
148646	chr21	6092571	6092730	+	0	NA	promoter-TSS (NR_152722)	promoter-TSS (NR_152722)	-985	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
235221	chrX	41369671	41370080	+	0	NA	Intergenic	L1ME1|LINE|L1	35709	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
236640	chrX	74923851	74924150	+	0	NA	intron (NM_001008537, intron 1 of 3)	intron (NM_001008537, intron 1 of 3)	1452	NM_001008537	340533		NM_001008537	ENSG00000050030	NEXMIF	KIAA2022|KIDLIA|MRX98|XLID98|XPN	neurite extension and migration factor	protein-coding
123155	chr19	52194371	52195000	+	0	NA	intron (NR_033500, intron 1 of 13)	MIRb|SINE|MIR	4633	NM_014225	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
194956	chr6	35296251	35296600	+	0	NA	TTS (NM_001292032)	TTS (NM_001292032)	-1393	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
68029	chr14	75161901	75162100	+	0	NA	intron (NM_006827, intron 1 of 4)	L1MC3|LINE|L1	14612	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
198016	chr6	90118601	90118800	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	178143	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
222503	chr8	140509051	140509500	+	0	NA	Intergenic	L2a|LINE|L2	-2047	NM_017444	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
121783	chr19	47781101	47781300	+	0	NA	intron (NM_003009, intron 4 of 5)	intron (NM_003009, intron 4 of 5)	2497	NM_003009	6415		NM_003009	ENSG00000178980	SELENOW	SEPW1|selW	selenoprotein W	protein-coding
48483	chr12	9795971	9796930	+	0	NA	Intergenic	L2|LINE|L2	-3602	NR_159359	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
137756	chr2	198004971	198005880	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	200832	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
95107	chr17	34840721	34841180	+	0	NA	Intergenic	Intergenic	120510	NM_006584	10693		NM_006584	ENSG00000132141	CCT6B	CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303	chaperonin containing TCP1 subunit 6B	protein-coding
215273	chr7	157009451	157010080	+	0	NA	promoter-TSS (NM_001165255)	promoter-TSS (NM_001165255)	-330	NM_001165255	3110		NM_005515	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
72623	chr15	38251351	38253600	+	0	NA	promoter-TSS (NM_152594)	promoter-TSS (NM_152594)	-361	NM_152594	161742		NM_152594	ENSG00000166068	SPRED1	LGSS|NFLS|PPP1R147|hSpred1|spred-1	sprouty related EVH1 domain containing 1	protein-coding
142824	chr20	16821501	16821750	+	0	NA	Intergenic	L1PA16|LINE|L1	73267	NM_020157	56914		NM_020157	ENSG00000125879	OTOR	FDP|MIAL1	otoraplin	protein-coding
101662	chr17	68294021	68294480	+	0	NA	intron (NM_001352901, intron 1 of 11)	intron (NM_001352901, intron 1 of 11)	2115	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
224207	chr9	5557501	5557700	+	0	NA	intron (NM_025239, intron 4 of 6)	intron (NM_025239, intron 4 of 6)	47069	NM_025239	80380		NM_025239	ENSG00000197646	PDCD1LG2	B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2	programmed cell death 1 ligand 2	protein-coding
181545	chr5	43087701	43088450	+	0	NA	intron (NR_102752, intron 2 of 2)	SVA_E|Retroposon|SVA	-20636	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
191086	chr6	3744851	3745550	+	0	NA	intron (NM_183373, intron 1 of 4)	intron (NM_183373, intron 1 of 4)	6513	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
24258	chr1	236394801	236396230	+	0	NA	5' UTR (NM_080738, exon 1 of 6)	5' UTR (NM_080738, exon 1 of 6)	102	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
39973	chr11	62595651	62595980	+	0	NA	exon (NM_004739, exon 13 of 18)	exon (NM_004739, exon 13 of 18)	-4292	NM_022830	64852		NM_022830	ENSG00000149016	TUT1	PAPD2|RBM21|STARPAP|TENT1|TUTase|URLC6	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding
171130	chr3	195540051	195540150	+	0	NA	intron (NM_006241, intron 1 of 5)	Tigger17c|DNA|TcMar-Tigger	3225	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
194606	chr6	33513201	33513480	+	0	NA	Intergenic	Intergenic	58764	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
209370	chr7	76296701	76296900	+	0	NA	Intergenic	AluSg4|SINE|Alu	-5873	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
56621	chr12	118302071	118302300	+	0	NA	intron (NM_001346487, intron 1 of 20)	intron (NM_001346487, intron 1 of 20)	57520	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
14170	chr1	121394701	121394900	+	0	NA	intron (NR_104189, intron 2 of 3)	intron (NR_104189, intron 2 of 3)	3105	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
99203	chr17	49553051	49553350	+	0	NA	intron (NR_103773, intron 1 of 2)	intron (NR_103773, intron 1 of 2)	20864	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
209845	chr7	90152801	90153380	+	0	NA	intron (NR_110029, intron 2 of 2)	SVA_D|Retroposon|SVA	-1379	NM_012449	26872		NM_012449	ENSG00000164647	STEAP1	PRSS24|STEAP	STEAP family member 1	protein-coding
128713	chr2	61696201	61696400	+	0	NA	Intergenic	AluY|SINE|Alu	157760	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
215540	chr7	158784971	158785300	+	0	NA	intron (NM_020728, intron 6 of 21)	intron (NM_020728, intron 6 of 21)	44374	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
105041	chr17	82061201	82061400	+	0	NA	exon (NM_022156, exon 8 of 14)	exon (NM_022156, exon 8 of 14)	4504	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
63060	chr13	113149151	113149450	+	0	NA	exon (NM_001312674, exon 7 of 7)	exon (NM_001312674, exon 7 of 7)	-9348	NM_003891	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
190360	chr5	179711551	179712180	+	0	NA	intron (NM_001363997, intron 7 of 14).2	AluSx1|SINE|Alu	12898	NM_001746	821		NM_001746	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
96228	chr17	39784971	39785330	+	0	NA	intron (NM_001284514, intron 6 of 8)	intron (NM_001284514, intron 6 of 8)	-6925	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
151745	chr22	17786351	17787200	+	0	NA	TTS (NM_015241)	TTS (NM_015241)	9485	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
33547	chr10	119292421	119293330	+	0	NA	intron (NM_005308, intron 1 of 15)	MER2|DNA|TcMar-Tigger	-85097	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
83635	chr16	28291471	28292900	+	0	NA	promoter-TSS (NM_001024401)	promoter-TSS (NM_001024401)	-340	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
153467	chr22	25404851	25405850	+	0	NA	promoter-TSS (NM_001135772)	promoter-TSS (NM_001135772)	58	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
143797	chr20	32456921	32457530	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	26265	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
126288	chr2	27205771	27205930	+	0	NA	intron (NR_028323, intron 6 of 16)	(TCCCA)n|Simple_repeat|Simple_repeat	6418	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
56570	chr12	117133851	117134680	+	0	NA	intron (NR_120464, intron 2 of 2)	intron (NR_120464, intron 2 of 2)	34798	NR_120464	101928244		NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
161236	chr3	39220571	39221330	+	0	NA	Intergenic	Intergenic	-28355	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
63095	chr13	113231371	113231530	+	0	NA	intron (NM_003589, intron 5 of 19)	intron (NM_003589, intron 5 of 19)	21837	NM_001008895	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
170667	chr3	187679601	187679950	+	0	NA	Intergenic	Intergenic	-9381	NM_001048	6750		NM_001048	ENSG00000157005	SST	SMST|SST1	somatostatin	protein-coding
210420	chr7	100078951	100079600	+	0	NA	intron (NM_001371212, intron 1 of 4)	intron (NM_001371212, intron 1 of 4)	2448	NM_001371216	7551		NM_017715	ENSG00000166526	ZNF3	A8-51|HF.12|KOX25|PP838|Zfp113	zinc finger protein 3	protein-coding
157774	chr22	46747451	46747750	+	0	NA	Intergenic	Intergenic	-9348	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
181827	chr5	52802371	52802530	+	0	NA	3' UTR (NM_015946, exon 3 of 3)	3' UTR (NM_015946, exon 3 of 3)	14534	NM_015946	53918		NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota mRNA surveillance and ribosome rescue factor	protein-coding
93682	chr17	19337871	19338430	+	0	NA	intron (NM_001321219, intron 5 of 5)	intron (NM_001321219, intron 5 of 5)	6424	NR_031591	100302256		NR_031591	ENSG00000221540	MIR1180	MIRN1180|hsa-mir-1180|mir-1180	microRNA 1180	ncRNA
165975	chr3	108070451	108070750	+	0	NA	intron (NM_198793, intron 3 of 8)	intron (NM_198793, intron 3 of 8)	20431	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
209527	chr7	77121001	77121250	+	0	NA	intron (NR_146190, intron 1 of 6)	intron (NR_146190, intron 1 of 6)	1164	NR_146190	641808		NR_146190		FAM185BP	FAM185B	family with sequence similarity 185, member A pseudogene	pseudo
139529	chr2	224577371	224577800	+	0	NA	intron (NM_003590, intron 1 of 15)	MIR|SINE|MIR	-7630	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
65666	chr14	52529171	52529330	+	0	NA	intron (NM_020784, intron 6 of 20)	L1PA4|LINE|L1	23255	NM_020784	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
80591	chr16	2908901	2909300	+	0	NA	Intergenic	L1MB8|LINE|L1	-2831	NM_001308068	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
25080	chr10	3854001	3854280	+	0	NA	Intergenic	Intergenic	20190	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
16277	chr1	154116201	154116400	+	0	NA	intron (NM_207308, intron 12 of 39)	AluSx1|SINE|Alu	-11708	NR_049883	100847024		NR_049883	ENSG00000263987	MIR5698	-	microRNA 5698	ncRNA
88945	chr16	87839501	87839700	+	0	NA	intron (NM_003486, intron 5 of 9)	intron (NM_003486, intron 5 of 9)	-4940	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
40294	chr11	63863701	63863930	+	0	NA	intron (NM_004954, intron 1 of 16)	AluJo|SINE|Alu	24705	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
32312	chr10	102159001	102160250	+	0	NA	intron (NM_004741, intron 7 of 12)	MLT1F1|LTR|ERVL-MaLR	7236	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
193182	chr6	29724891	29725250	+	0	NA	exon (NM_001098479, exon 4 of 7).5	exon (NM_001098479, exon 4 of 7).5	1636	NM_001098478	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
92211	chr17	7860051	7860550	+	0	NA	3' UTR (NM_001330110, exon 4 of 4)	3' UTR (NM_001330110, exon 4 of 4)	2297	NM_001330110	124637		NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
34898	chr11	387271	387900	+	0	NA	Intergenic	MER52-int|LTR|ERV1	-5011	NM_001303029	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
4840	chr1	23657421	23657980	+	0	NA	Intergenic	Intergenic	30366	NR_167904	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
75512	chr15	66471701	66472980	+	0	NA	intron (NM_002755, intron 5 of 10)	MLT1K|LTR|ERVL-MaLR	24694	NR_039737	100616149		NR_039737	ENSG00000266589	MIR4512	-	microRNA 4512	ncRNA
166118	chr3	111252921	111253180	+	0	NA	Intergenic	Intergenic	181234	NM_001243288	25945		NM_015480	ENSG00000177707	NECTIN3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3	nectin cell adhesion molecule 3	protein-coding
75388	chr15	65745851	65746200	+	0	NA	intron (NM_001376919, intron 4 of 31)	AluSq2|SINE|Alu	-26693	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
80262	chr16	2224951	2225750	+	0	NA	intron (NM_004424, intron 1 of 13)	intron (NM_004424, intron 1 of 13)	1759	NM_004424	1877		NM_004424	ENSG00000167967	E4F1	E4F	E4F transcription factor 1	protein-coding
47727	chr12	6465521	6466230	+	0	NA	exon (NM_014231, exon 3 of 5)	exon (NM_014231, exon 3 of 5)	4802	NR_123717	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
73824	chr15	49042451	49042550	+	0	NA	intron (NM_001193489, intron 1 of 17)	7SLRNA|srpRNA|srpRNA	3946	NM_014701	9728		NM_014701	ENSG00000138593	SECISBP2L	SBP2L|SLAN	SECIS binding protein 2 like	protein-coding
214732	chr7	151038951	151040030	+	0	NA	intron (NM_001282291, intron 10 of 16)	intron (NM_001282291, intron 10 of 16)	-8802	NM_020322	9311		NM_004769	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid sensing ion channel subunit 3	protein-coding
213252	chr7	134413751	134413850	+	0	NA	Intergenic	L2a|LINE|L2	45300	NM_001628	231		NM_001628	ENSG00000085662	AKR1B1	ADR|ALDR1|ALR2|AR	aldo-keto reductase family 1 member B	protein-coding
157673	chr22	46283451	46283750	+	0	NA	intron (NM_017931, intron 7 of 13)	AluSx|SINE|Alu	13060	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
9928	chr1	54477251	54478000	+	0	NA	Intergenic	Intergenic	-70603	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
195822	chr6	41278901	41279400	+	0	NA	TTS (NM_001242589)	TTS (NM_001242589)	7532	NM_001242590	54210		NM_018643	ENSG00000124731	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
167886	chr3	136078771	136079030	+	0	NA	intron (NM_002718, intron 7 of 13)	intron (NM_002718, intron 7 of 13)	56158	NM_181897	5523		NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
68197	chr14	76812301	76813850	+	0	NA	promoter-TSS (NM_015305)	promoter-TSS (NM_015305)	-193	NM_001370747	23357		NM_015305	ENSG00000013523	ANGEL1	Ccr4e|KIAA0759	angel homolog 1	protein-coding
128136	chr2	48345301	48345500	+	0	NA	intron (NM_001375445, intron 3 of 7)	L1MA7|LINE|L1	30718	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
43709	chr11	86032251	86032550	+	0	NA	intron (NM_001206947, intron 1 of 18)	AluSx1|SINE|Alu	36684	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
23686	chr1	231421181	231422880	+	0	NA	5' UTR (NM_022051, exon 1 of 5)	5' UTR (NM_022051, exon 1 of 5)	257	NM_001377261	54583		NM_022051	ENSG00000135766	EGLN1	C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia inducible factor 1	protein-coding
34191	chr10	128209971	128211140	+	0	NA	Intergenic	CpG	-75395	NR_120619	101927381		NR_120619	ENSG00000280953	LINC01163	TCONS_00017722	long intergenic non-protein coding RNA 1163	ncRNA
1577	chr1	3588021	3588800	+	0	NA	intron (NM_001409, intron 3 of 36)	intron (NM_001409, intron 3 of 36)	23098	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
32588	chr10	103493121	103494930	+	0	NA	5' UTR (NM_004210, exon 1 of 6)	5' UTR (NM_004210, exon 1 of 6)	320	NM_004210	9148		NM_004210	ENSG00000107954	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding
113561	chr19	10251481	10252850	+	0	NA	promoter-TSS (NM_015956)	promoter-TSS (NM_015956)	-49	NM_146388	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
236968	chrX	101393201	101393830	+	0	NA	intron (NM_001199974, intron 3 of 3)	L1MA1|LINE|L1	2504	NM_021029	6173		NM_021029	ENSG00000241343	RPL36A	L36A|L44L|MIG6|RPL44|eL42	ribosomal protein L36a	protein-coding
203060	chr6	166251551	166252050	+	0	NA	intron (NR_125862, intron 2 of 4)	intron (NR_125862, intron 2 of 4)	14831	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
228630	chr9	105817071	105817430	+	0	NA	Intergenic	SATR1|Satellite|Satellite	122709	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
170305	chr3	184338551	184339380	+	0	NA	5' UTR (NM_001366133, exon 1 of 5)	5' UTR (NM_001366133, exon 1 of 5)	132	NM_001366133	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
68399	chr14	80957051	80957350	+	0	NA	intron (NM_001142626, intron 1 of 8)	L2c|LINE|L2	1579	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
8297	chr1	40047601	40048350	+	0	NA	intron (NM_001350484, intron 2 of 13)	intron (NM_001350484, intron 2 of 13)	6949	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
29722	chr10	72081821	72082080	+	0	NA	intron (NM_014767, intron 2 of 11)	L2b|LINE|L2	6601	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
76059	chr15	72340621	72340880	+	0	NA	TTS (NM_001318825)	TTS (NM_001318825)	-20593	NM_052840	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
176242	chr4	86904001	86904400	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-11778	NM_001369889	132989		NM_144645	ENSG00000163633	C4orf36	-	chromosome 4 open reading frame 36	protein-coding
61876	chr13	77207951	77208050	+	0	NA	intron (NM_015057, intron 23 of 82)	MER4CL34|LTR|ERV1	119094	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
79933	chr16	1743671	1744230	+	0	NA	intron (NM_001318852, intron 5 of 31)	intron (NM_001318852, intron 5 of 31)	8965	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
64841	chr14	35160871	35161550	+	0	NA	intron (NM_001256678, intron 3 of 6)	intron (NM_001256678, intron 3 of 6)	38658	NM_001256679	9692		NM_014672	ENSG00000100890	PRORP	COXPD54|KIAA0391|MRPP3	protein only RNase P catalytic subunit	protein-coding
89508	chr16	89160801	89161130	+	0	NA	non-coding (NR_024347, exon 3 of 4)	non-coding (NR_024347, exon 3 of 4)	1745	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
38847	chr11	47327171	47327900	+	0	NA	intron (NR_164839, intron 33 of 34)	intron (NR_164839, intron 33 of 34)	25167	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
172003	chr4	959021	959650	+	0	NA	TTS (NM_001297426)	TTS (NM_001297426)	14234	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
16757	chr1	155327151	155327530	+	0	NA	intron (NM_014328, intron 7 of 8)	MER58D|DNA|hAT-Charlie	2833	NM_001278230	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
190736	chr6	358421	359080	+	0	NA	Intergenic	Intergenic	-33002	NR_046000	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
116448	chr19	18055471	18056180	+	0	NA	Intergenic	AluJb|SINE|Alu	31109	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
217378	chr8	28085151	28085930	+	0	NA	Intergenic	Intergenic	-1604	NM_001010906	389643		NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC|SLIPGC	nuclear GTPase, germinal center associated	protein-coding
50693	chr12	48903701	48904950	+	0	NA	5' UTR (NM_001286957, exon 1 of 8)	5' UTR (NM_001286957, exon 1 of 8)	192	NM_001286957	85478		NM_033124	ENSG00000139537	CCDC65	CFAP250|DRC2|FAP250|NYD-SP28	coiled-coil domain containing 65	protein-coding
1525	chr1	3068671	3069030	+	0	NA	promoter-TSS (NM_022114)	promoter-TSS (NM_022114)	-353	NM_022114	63976		NM_022114	ENSG00000142611	PRDM16	CMD1LL|KMT8F|LVNC8|MEL1|PFM13	PR/SET domain 16	protein-coding
112055	chr19	5146121	5146780	+	0	NA	intron (NM_015015, intron 21 of 22)	intron (NM_015015, intron 21 of 22)	177337	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
143542	chr20	31579751	31580150	+	0	NA	Intergenic	Intergenic	-6687	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
120033	chr19	41957821	41958800	+	0	NA	exon (NM_006423, exon 3 of 5)	exon (NM_006423, exon 3 of 5)	1011	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
192866	chr6	27250921	27252500	+	0	NA	intron (NM_005865, intron 7 of 11)	CpG-23319	4009	NM_005865	10279		NM_005865	ENSG00000112812	PRSS16	TSSP	serine protease 16	protein-coding
110353	chr19	1890001	1890530	+	0	NA	Intergenic	L2a|LINE|L2	-4769	NM_031213	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
133117	chr2	112652771	112652930	+	0	NA	intron (NM_005415, intron 5 of 10)	intron (NM_005415, intron 5 of 10)	6911	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
203119	chr6	166626611	166628730	+	0	NA	promoter-TSS (NM_021135)	promoter-TSS (NM_021135)	-419	NM_021135	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
42182	chr11	67955021	67956200	+	0	NA	Intergenic	CpG	48487	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
6937	chr1	31723821	31724150	+	0	NA	Intergenic	Intergenic	-19968	NM_001856	1307		NM_001856	ENSG00000084636	COL16A1	447AA|FP1572	collagen type XVI alpha 1 chain	protein-coding
122335	chr19	49157401	49158400	+	0	NA	intron (NM_001321282, intron 1 of 23)	CpG	108	NM_001321283	54795		NM_017636	ENSG00000130529	TRPM4	EKVP6|LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
136179	chr2	174491301	174491730	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-4427	NM_001267051	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
41586	chr11	66343821	66344080	+	0	NA	intron (NM_015399, intron 1 of 9)	intron (NM_015399, intron 1 of 9)	1154	NM_015399	25855		NM_015399	ENSG00000174744	BRMS1	-	BRMS1 transcriptional repressor and anoikis regulator	protein-coding
64148	chr14	22886171	22887670	+	0	NA	3' UTR (NM_173527, exon 5 of 5)	3' UTR (NM_173527, exon 5 of 5)	3698	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
148679	chr21	6145451	6145550	+	0	NA	Intergenic	Intergenic	34369	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
206177	chr7	28123651	28123950	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-56657	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
71887	chr15	22472971	22473130	+	0	NA	Intergenic	Intergenic	9324	NR_036470	100132101		NR_036470		HERC2P7	-	HERC2 pseudogene 7	pseudo
49665	chr12	29164551	29165100	+	0	NA	intron (NM_001271783, intron 1 of 11)	intron (NM_001271783, intron 1 of 11)	15547	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
99726	chr17	50908801	50909710	+	0	NA	Intergenic	Intergenic	-41277	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
160408	chr3	28243651	28245380	+	0	NA	intron (NM_001331187, intron 1 of 3)	AluSx3|SINE|Alu	2896	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
145250	chr20	38961801	38962980	+	0	NA	promoter-TSS (NM_021931)	promoter-TSS (NM_021931)	46	NR_033905	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
191534	chr6	11413271	11413780	+	0	NA	Intergenic	Intergenic	-31177	NR_073131	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
44268	chr11	102267521	102268000	+	0	NA	Intergenic	Intergenic	-49724	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
78524	chr15	92947801	92948200	+	0	NA	intron (NM_001042572, intron 12 of 12)	intron (NM_001042572, intron 12 of 12)	43601	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
18006	chr1	160550301	160550900	+	0	NA	intron (NM_001184881, intron 4 of 5)	intron (NM_001184881, intron 4 of 5)	-27345	NM_001184714	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
155251	chr22	37964871	37965450	+	0	NA	intron (NM_001301130, intron 3 of 5)	AluSx3|SINE|Alu	-2403	NR_106878	102465492		NR_106878	ENSG00000284289	MIR6820	hsa-mir-6820	microRNA 6820	ncRNA
141777	chr2	242084001	242084230	+	0	NA	promoter-TSS (NR_146651)	promoter-TSS (NR_146651)	23	NR_146651	105373979		NR_146651	ENSG00000232002	LINC01880	-	long intergenic non-protein coding RNA 1880	ncRNA
83412	chr16	27213451	27213550	+	0	NA	intron (NM_024773, intron 2 of 7)	intron (NM_024773, intron 2 of 7)	9525	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
49690	chr12	30795721	30797430	+	0	NA	intron (NR_040245, intron 1 of 4)	CpG	894	NR_040245	100287314		NR_040245		LINC00941	lncIAPF|lncRNA-MUF	long intergenic non-protein coding RNA 941	ncRNA
15023	chr1	148328801	148329000	+	0	NA	Intergenic	Intergenic	5654	NR_049810	100847044		NR_049810	ENSG00000283676	MIR5087	-	microRNA 5087	ncRNA
97643	chr17	44194671	44195400	+	0	NA	intron (NM_001382309, intron 10 of 12)	intron (NM_001382309, intron 10 of 12)	4334	NM_001382315	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
30864	chr10	86708871	86709230	+	0	NA	intron (NM_001368066, intron 9 of 14)	intron (NM_001368066, intron 9 of 14)	40486	NM_001080116	11155		NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
152574	chr22	21120671	21120830	+	0	NA	intron (NR_037566, intron 5 of 5)	intron (NR_037566, intron 5 of 5)	17734	NR_037566	400892		NM_207474	ENSG00000291044	BCRP2	BCR-2|BCR2|BCRL2	BCR pseudogene 2	pseudo
124468	chr19	58539421	58539750	+	0	NA	promoter-TSS (NM_001316982)	promoter-TSS (NM_001316982)	-674	NM_001316982	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
4063	chr1	19062571	19062730	+	0	NA	Intergenic	MIRb|SINE|MIR	-105974	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
22427	chr1	220156951	220157250	+	0	NA	intron (NM_012414, intron 31 of 34)	intron (NM_012414, intron 31 of 34)	-38859	NR_029711	406969		NR_029711	ENSG00000207624	MIR194-1	MIRN194-1|mir-194-1	microRNA 194-1	ncRNA
181321	chr5	40377451	40377550	+	0	NA	Intergenic	Intergenic	-302415	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
29214	chr10	68992871	68993300	+	0	NA	intron (NM_015634, intron 1 of 6)	intron (NM_015634, intron 1 of 6)	4282	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
195795	chr6	41032251	41032800	+	0	NA	intron (NM_173561, intron 4 of 8)	AluSx1|SINE|Alu	6696	NM_173561	222643		NM_173561	ENSG00000124602	UNC5CL	MUXA|ZUD	unc-5 family C-terminal like	protein-coding
132556	chr2	106268071	106268700	+	0	NA	Intergenic	L1ME4b|LINE|L1	-74084	NM_001377504	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
126794	chr2	30332951	30333980	+	0	NA	Intergenic	Intergenic	-13181	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
235843	chrX	49884271	49884730	+	0	NA	Intergenic	Intergenic	5016	NM_001145073	389856		NM_001145073	ENSG00000273820	USP27X	MRX105|USP22L|USP27|XLID105	ubiquitin specific peptidase 27 X-linked	protein-coding
227703	chr9	93025001	93026130	+	0	NA	intron (NM_001369951, intron 14 of 17)	intron (NM_001369951, intron 14 of 17)	-10621	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
190113	chr5	177945651	177946150	+	0	NA	intron (NR_149047, intron 1 of 3)	intron (NR_149047, intron 1 of 3)	6373	NR_149047	100128340		NR_149047		LOC100128340	-	uncharacterized LOC100128340	ncRNA
182774	chr5	68368901	68370150	+	0	NA	Intergenic	L1MB2|LINE|L1	76948	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
146332	chr20	49234501	49234700	+	0	NA	intron (NM_017895, intron 11 of 20)	L2b|LINE|L2	15184	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
210602	chr7	100426101	100426950	+	0	NA	intron (NM_001258008, intron 1 of 15)	intron (NM_001258008, intron 1 of 15)	2178	NM_001258008	55063		NM_017984	ENSG00000078487	ZCWPW1	ZCW1	zinc finger CW-type and PWWP domain containing 1	protein-coding
31202	chr10	91226471	91226930	+	0	NA	intron (NM_032373, intron 2 of 9)	intron (NM_032373, intron 2 of 9)	6037	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
26343	chr10	15210951	15211580	+	0	NA	TTS (NM_001010924)	TTS (NM_001010924)	-42572	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
91301	chr17	4232101	4232670	+	0	NA	intron (NR_047571, intron 2 of 23)	intron (NR_047571, intron 2 of 23)	31462	NM_001257999	51479		NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
95309	chr17	35577801	35579180	+	0	NA	promoter-TSS (NM_000286)	promoter-TSS (NM_000286)	81	NM_000286	5193		NM_000286	ENSG00000108733	PEX12	PAF-3|PBD3A	peroxisomal biogenesis factor 12	protein-coding
102443	chr17	75687871	75688600	+	0	NA	intron (NR_126036, intron 3 of 9)	intron (NR_126036, intron 3 of 9)	20897	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
24778	chr1	248866971	248867130	+	0	NA	Intergenic	AluJb|SINE|Alu	-7965	NM_001350072	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
20041	chr1	185384021	185384300	+	0	NA	Intergenic	L1PA4|LINE|L1	-49121	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
91972	chr17	7408171	7409350	+	0	NA	intron (NM_020795, intron 1 of 6)	intron (NM_020795, intron 1 of 6)	915	NM_020795	57555		NM_020795	ENSG00000169992	NLGN2	-	neuroligin 2	protein-coding
124496	chr19	58571951	58574200	+	0	NA	non-coding (NR_027334, exon 6 of 6)	non-coding (NR_027334, exon 6 of 6)	260	NM_001267033	7593		NM_003422	ENSG00000099326	MZF1	MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6	myeloid zinc finger 1	protein-coding
210952	chr7	101352401	101352800	+	0	NA	Intergenic	Intergenic	-10220	NM_133457	136227		NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen type XXVI alpha 1 chain	protein-coding
130628	chr2	86038001	86040180	+	0	NA	intron (NM_015425, intron 26 of 33)	intron (NM_015425, intron 26 of 33)	66796	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
172309	chr4	1599471	1600280	+	0	NA	Intergenic	Intergenic	84116	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
182673	chr5	67309101	67309300	+	0	NA	Intergenic	Intergenic	-112401	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
101916	chr17	74458721	74458980	+	0	NA	Intergenic	MLT2A2|LTR|ERVL	-7523	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
217651	chr8	30078201	30078500	+	0	NA	intron (NM_016127, intron 1 of 5)	HAL1|LINE|L1	4714	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
227604	chr9	92718821	92719080	+	0	NA	exon (NM_015250, exon 5 of 8)	exon (NM_015250, exon 5 of 8)	45883	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
1827	chr1	6246671	6247230	+	0	NA	TTS (NM_207370)	TTS (NM_207370)	2771	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
124837	chr2	7737101	7737300	+	0	NA	Intergenic	Intergenic	162455	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
126693	chr2	30149551	30151250	+	0	NA	intron (NM_001127400, intron 2 of 3)	MIR|SINE|MIR	3393	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
199388	chr6	116281021	116281480	+	0	NA	intron (NM_001080976, intron 1 of 5)	MLT1D|LTR|ERVL-MaLR	1164	NR_136524	29940		NM_013352	ENSG00000111817	DSE	DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
179772	chr5	298721	299030	+	0	NA	intron (NM_001267557, intron 2 of 3)	intron (NM_001267557, intron 2 of 3)	-22839	NM_001377236	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
162707	chr3	48998371	48998730	+	0	NA	intron (NM_177939, intron 2 of 8)	intron (NM_177939, intron 2 of 8)	8309	NM_177939	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
46407	chr11	126336351	126336850	+	0	NA	intron (NM_014026, intron 3 of 5)	intron (NM_014026, intron 3 of 5)	18987	NR_033839	399972		NR_033839		GSEC	DCPS-AS1|ST3GAL4-AS1	G-quadruplex forming sequence containing lncRNA	ncRNA
108986	chr18	79689021	79689280	+	0	NA	intron (NM_001202504, intron 1 of 12)	intron (NM_001202504, intron 1 of 12)	7720	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
37441	chr11	17730851	17731230	+	0	NA	Intergenic	Intergenic	-3741	NM_001112741	3746		NM_004976	ENSG00000129159	KCNC1	EPM7|KV3.1|KV4|NGK2	potassium voltage-gated channel subfamily C member 1	protein-coding
86523	chr16	67156601	67157280	+	0	NA	intron (NM_003789, intron 1 of 4)	intron (NM_003789, intron 1 of 4)	2969	NM_003789	8717		NM_003789	ENSG00000102871	TRADD	Hs.89862	TNFRSF1A associated via death domain	protein-coding
227954	chr9	94826671	94826830	+	0	NA	intron (NM_032823, intron 5 of 14)	(TGGTGG)n|Simple_repeat|Simple_repeat	16788	NR_031755	100313780		NR_031755	ENSG00000252153	MIR2278	mir-2278	microRNA 2278	ncRNA
217901	chr8	37890701	37891180	+	0	NA	intron (NM_025151, intron 1 of 4)	intron (NM_025151, intron 1 of 4)	8557	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
110059	chr19	1486751	1486850	+	0	NA	intron (NM_017573, intron 8 of 14)	intron (NM_017573, intron 8 of 14)	3650	NM_017573	54760		NM_017573	ENSG00000115257	PCSK4	PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding
69793	chr14	99194101	99194550	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	77872	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
63325	chr13	114009571	114009880	+	0	NA	intron (NM_001320822, intron 16 of 23).2	intron (NM_001320822, intron 16 of 23).2	-35649	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
21976	chr1	209576651	209576980	+	0	NA	Intergenic	Intergenic	-6899	NM_020439	57172		NM_020439	ENSG00000008118	CAMK1G	CLICK3|CLICKIII|VWS1	calcium/calmodulin dependent protein kinase IG	protein-coding
63473	chr13	114148001	114149330	+	0	NA	Intergenic	Intergenic	-16042	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
120339	chr19	43561201	43561400	+	0	NA	intron (NM_006297, intron 2 of 16)	intron (NM_006297, intron 2 of 16)	14227	NM_006297	7515		NM_006297	ENSG00000073050	XRCC1	RCC|SCAR26	X-ray repair cross complementing 1	protein-coding
24941	chr10	1240251	1240880	+	0	NA	intron (NM_018702, intron 5 of 9)	intron (NM_018702, intron 5 of 9)	80797	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
192898	chr6	27547521	27547850	+	0	NA	Intergenic	Intergenic	-74567	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
6619	chr1	28888971	28889330	+	0	NA	intron (NM_001376022, intron 1 of 20)	MIRb|SINE|MIR	2050	NM_001376023	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
87889	chr16	78744021	78744350	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	644531	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19299	chr1	172898971	172899130	+	0	NA	Intergenic	Intergenic	151891	NM_005092	8995		NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	TNF superfamily member 18	protein-coding
188073	chr5	150129871	150130280	+	0	NA	intron (NM_001355016, intron 8 of 21)	intron (NM_001355016, intron 8 of 21)	-16703	NM_005211	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
227260	chr9	89362321	89362580	+	0	NA	intron (NM_001371200, intron 20 of 20)	intron (NM_001371200, intron 20 of 20)	43599	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
37240	chr11	14554951	14555750	+	0	NA	intron (NM_148976, intron 2 of 10)	L4_A_Mam|LINE|RTE-X	-34905	NM_001143937	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
65681	chr14	52695401	52696830	+	0	NA	promoter-TSS (NM_001382470)	promoter-TSS (NM_001382470)	-557	NM_001382465	30001		NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
226975	chr9	81689321	81690580	+	0	NA	promoter-TSS (NM_001303103)	promoter-TSS (NM_001303103)	237	NR_109772	101927502		NR_109772	ENSG00000233926	TLE1-DT	-	TLE1 divergent transcript	ncRNA
61689	chr13	74041251	74041950	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	92329	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
170817	chr3	189393721	189394180	+	0	NA	Intergenic	Intergenic	-153356	NR_046722	100874027		NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
192962	chr6	27839501	27840250	+	0	NA	TTS (NM_003520)	TTS (NM_003520)	1306	NM_003520	8341		NM_003520	ENSG00000233822	H2BC15	H2B/d|H2BFD|HIST1H2BN	H2B clustered histone 15	protein-coding
207332	chr7	44057751	44057850	+	0	NA	exon (NM_001284313, exon 4 of 11)	exon (NM_001284313, exon 4 of 11)	6034	NR_106896	102466985		NR_106896	ENSG00000284067	MIR6837	hsa-mir-6837	microRNA 6837	ncRNA
219792	chr8	81189521	81189950	+	0	NA	Intergenic	Intergenic	-77667	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
77563	chr15	84915001	84915500	+	0	NA	intron (NM_001321722, intron 9 of 18)	intron (NM_001321722, intron 9 of 18)	30588	NM_001321721	9154		NM_004213	ENSG00000156222	SLC28A1	CNT1|HCNT1|URCTU	solute carrier family 28 member 1	protein-coding
135346	chr2	160396221	160396950	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	11297	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
177366	chr4	110515671	110515830	+	0	NA	intron (NR_166844, intron 7 of 19)	MLT1A|LTR|ERVL-MaLR	39595	NM_001379613	2028		NM_001977	ENSG00000138792	ENPEP	APA|CD249|gp160	glutamyl aminopeptidase	protein-coding
84303	chr16	30090551	30090650	+	0	NA	intron (NM_004608, intron 3 of 8)	intron (NM_004608, intron 3 of 8)	1324	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
18344	chr1	161207151	161207650	+	0	NA	intron (NR_165188, intron 3 of 11)	intron (NR_165188, intron 3 of 11)	5033	NM_001377299	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
193354	chr6	30261071	30261780	+	0	NA	non-coding (NR_027822, exon 4 of 7)	non-coding (NR_027822, exon 4 of 7)	1863	NR_027822	3139		NR_027822	ENSG00000291097	HLA-L	HLA-92|HLA92|HLAL	major histocompatibility complex, class I, L (pseudogene)	pseudo
174319	chr4	38659471	38660100	+	0	NA	intron (NR_026804, intron 1 of 7)	AluSq2|SINE|Alu	-4414	NM_016531	51274		NM_016531	ENSG00000109787	KLF3	BKLF	KLF transcription factor 3	protein-coding
142373	chr20	3800651	3800750	+	0	NA	intron (NM_001287522, intron 5 of 14)	intron (NM_001287522, intron 5 of 14)	638	NM_001287524	994		NM_004358	ENSG00000101224	CDC25B	-	cell division cycle 25B	protein-coding
230259	chr9	127907851	127907950	+	0	NA	TTS (NM_175039)	TTS (NM_175039)	-2552	NR_104629	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
140075	chr2	231440851	231441530	+	0	NA	Intergenic	AluSp|SINE|Alu	14746	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
100257	chr17	59435701	59435950	+	0	NA	intron (NR_110813, intron 2 of 2)	L1MB3|LINE|L1	69742	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
10678	chr1	71074721	71075080	+	0	NA	intron (NM_005455, intron 4 of 10)	intron (NM_005455, intron 4 of 10)	6135	NM_203350	9406		NM_005455	ENSG00000132485	ZRANB2	ZIS|ZIS1|ZIS2|ZNF265	zinc finger RANBP2-type containing 2	protein-coding
164717	chr3	68081651	68082030	+	0	NA	intron (NM_213609, intron 2 of 4)	L1PA3|LINE|L1	77593	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
106428	chr18	13566871	13567980	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-43689	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
32043	chr10	101038851	101038950	+	0	NA	intron (NM_030971, intron 10 of 11)	intron (NM_030971, intron 10 of 11)	7661	NM_030971	81855		NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3|SLC56A3	sideroflexin 3	protein-coding
221103	chr8	117881521	117882130	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	39088	NR_145799	109623457		NR_145799		SNORD168	-	small nucleolar RNA, C/D box 168	snoRNA
10367	chr1	64950601	64951200	+	0	NA	intron (NM_001321852, intron 1 of 24)	MIR3|SINE|MIR	15649	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
20530	chr1	198687251	198688250	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	48710	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
161009	chr3	37451471	37453350	+	0	NA	exon (NM_002207, exon 1 of 28)	exon (NM_002207, exon 1 of 28)	269	NM_002207	3680		NM_002207	ENSG00000144668	ITGA9	ALPHA-RLC|ITGA4L|RLC	integrin subunit alpha 9	protein-coding
169941	chr3	179033051	179033350	+	0	NA	intron (NR_164721, intron 2 of 5)	SVA_B|Retroposon|SVA	36142	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
164689	chr3	67650571	67651000	+	0	NA	intron (NM_001177599, intron 1 of 10)	intron (NM_001177599, intron 1 of 10)	3827	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
23661	chr1	231211351	231211850	+	0	NA	intron (NM_001300889, intron 10 of 11)	intron (NM_001300889, intron 10 of 11)	-23973	NR_166514	149373		NM_153009	ENSG00000235710	TRIM67-AS1	-	TRIM67 antisense RNA 1	ncRNA
24811	chr10	182551	183000	+	0	NA	intron (NM_212479, intron 2 of 13)	MIRc|SINE|MIR	2781	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
120500	chr19	44770101	44771230	+	0	NA	Intergenic	Intergenic	-7204	NM_001130852	23624		NM_012116	ENSG00000142273	CBLC	CBL-3|CBL-SL|RNF57	Cbl proto-oncogene C	protein-coding
200054	chr6	129882521	129882780	+	0	NA	Intergenic	L1PA8A|LINE|L1	-21335	NM_001010876	253582		NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
213130	chr7	131359351	131359750	+	0	NA	intron (NM_001321316, intron 1 of 17)	L1MCa|LINE|L1	31674	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
52538	chr12	56125071	56125400	+	0	NA	3' UTR (NM_001303125, exon 3 of 3)	3' UTR (NM_001303125, exon 3 of 3)	-2967	NM_001184796	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
113636	chr19	10330901	10331100	+	0	NA	intron (NM_133452, intron 1 of 12)	AluSx|SINE|Alu	2529	NM_133452	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
2959	chr1	11914551	11914850	+	0	NA	Intergenic	Intergenic	6546	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
153929	chr22	30330121	30331830	+	0	NA	Intergenic	Intergenic	-4034	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
172530	chr4	2299171	2299600	+	0	NA	intron (NM_020972, intron 8 of 12)	L1ME4c|LINE|L1	-37276	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
52769	chr12	56678771	56679330	+	0	NA	intron (NM_001282601, intron 1 of 6)	AluJr4|SINE|Alu	9234	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
225118	chr9	33467801	33468000	+	0	NA	promoter-TSS (NR_106910)	promoter-TSS (NR_106910)	35	NR_106910	102465512		NR_106910	ENSG00000275651	MIR6851	hsa-mir-6851	microRNA 6851	ncRNA
24118	chr1	235651221	235651480	+	0	NA	promoter-TSS (NM_004485).2	promoter-TSS (NM_004485).2	-596	NM_001098721	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
236725	chrX	78106071	78106650	+	0	NA	intron (NM_000291, intron 1 of 10)	intron (NM_000291, intron 1 of 10)	2112	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
164560	chr3	63992471	63992980	+	0	NA	intron (NM_001177387, intron 10 of 12)	intron (NM_001177387, intron 10 of 12)	-11297	NR_038286	100507062		NR_038286	ENSG00000239653	PSMD6-AS2	-	PSMD6 antisense RNA 2	ncRNA
137980	chr2	201211951	201212650	+	0	NA	intron (NM_001206542, intron 7 of 7)	intron (NM_001206542, intron 7 of 7)	-21143	NM_001228	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
31862	chr10	100020301	100020780	+	0	NA	Intergenic	Intergenic	-10593	NM_015221	23268		NM_015221	ENSG00000107554	DNMBP	ARHGEF36|CTRCT48|TUBA	dynamin binding protein	protein-coding
38725	chr11	46698701	46699100	+	0	NA	intron (NM_004308, intron 1 of 12)	intron (NM_004308, intron 1 of 12)	1719	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
182145	chr5	56316451	56316750	+	0	NA	Intergenic	Intergenic	-83270	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
86372	chr16	66561401	66562000	+	0	NA	intron (NM_001204099, intron 2 of 3)	intron (NM_001204099, intron 2 of 3)	-4739	NM_181268	113540		NM_052999	ENSG00000089505	CMTM1	CKLFH|CKLFH1|CKLFSF1	CKLF like MARVEL transmembrane domain containing 1	protein-coding
28579	chr10	51074751	51074850	+	0	NA	exon (NM_001374782, exon 1 of 7)	exon (NM_001374782, exon 1 of 7)	313	NM_006258	5592		NM_006258	ENSG00000185532	PRKG1	AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha	protein kinase cGMP-dependent 1	protein-coding
186632	chr5	138549501	138549930	+	0	NA	Intergenic	L1MC5|LINE|L1	-6479	NM_001364160	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
194780	chr6	34154151	34154250	+	0	NA	intron (NM_001256809, intron 1 of 8)	MIRb|SINE|MIR	1422	NM_001256809	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
109075	chr18	79920001	79920650	+	0	NA	intron (NM_001146345, intron 3 of 4)	intron (NM_001146345, intron 3 of 4)	31328	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
149257	chr21	25895801	25896330	+	0	NA	intron (NM_001385253, intron 15 of 16)	intron (NM_001385253, intron 15 of 16)	-160411	NM_001320267	522		NM_001685	ENSG00000154723	ATP5PF	ATP5|ATP5A|ATP5J|ATPM|CF6|F6	ATP synthase peripheral stalk subunit F6	protein-coding
6106	chr1	27332151	27332250	+	0	NA	intron (NR_037576, intron 4 of 6)	intron (NR_037576, intron 4 of 6)	8326	NR_033926	644961		NR_033926		ACTG1P20	-	actin gamma 1 pseudogene 20	pseudo
90627	chr17	1650801	1651030	+	0	NA	exon (NM_006445, exon 43 of 43)	exon (NM_006445, exon 43 of 43)	-1049	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
86901	chr16	68060571	68061180	+	0	NA	intron (NM_017803, intron 7 of 16)	intron (NM_017803, intron 7 of 16)	-24495	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
21551	chr1	206204901	206206380	+	0	NA	promoter-TSS (NM_001385241)	promoter-TSS (NM_001385241)	133	NM_001385240	729533		NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
25559	chr10	7507851	7508780	+	0	NA	Intergenic	Intergenic	-96829	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
44101	chr11	95835951	95836280	+	0	NA	intron (NM_016156, intron 14 of 14)	intron (NM_016156, intron 14 of 14)	45617	NM_014679	9702		NM_014679	ENSG00000166037	CEP57	MVA2|PIG8|TSP57	centrosomal protein 57	protein-coding
33799	chr10	123146751	123147080	+	0	NA	Intergenic	Intergenic	-1207	NM_005519	3167		NM_005519	ENSG00000188816	HMX2	H6L|Nkx5-2	H6 family homeobox 2	protein-coding
178704	chr4	152639571	152639730	+	0	NA	intron (NM_152680, intron 6 of 6)	AluJr|SINE|Alu	40347	NM_152680	201799		NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding
180092	chr5	1141751	1142350	+	0	NA	Intergenic	Intergenic	-29987	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
205871	chr7	25019451	25019550	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-39322	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
153194	chr22	23849121	23850380	+	0	NA	intron (NR_003082, intron 4 of 4)	CpG	-6953	NR_104248	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
48238	chr12	8241951	8244800	+	0	NA	promoter-TSS (NR_024254)	promoter-TSS (NR_024254)	-429	NR_024254	653113		NR_024254		FAM86FP	-	family with sequence similarity 86, member A pseudogene	pseudo
49164	chr12	14979371	14979880	+	0	NA	intron (NM_006205, intron 3 of 3)	MIR3|SINE|MIR	6583	NM_006205	5149		NM_006205	ENSG00000139053	PDE6H	ACHM6|RCD3	phosphodiesterase 6H	protein-coding
113114	chr19	8299551	8300530	+	0	NA	Intergenic	Intergenic	8318	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
141621	chr2	241677401	241677800	+	0	NA	intron (NR_135492, intron 4 of 4)	CpG	9215	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
128864	chr2	64021621	64021950	+	0	NA	Intergenic	Intergenic	-2357	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
163050	chr3	49902471	49902900	+	0	NA	exon (NM_001318913, exon 1 of 18)	exon (NM_001318913, exon 1 of 18)	952	NM_001318913	4486		NM_002447	ENSG00000164078	MST1R	CD136|CDw136|NPCA3|PTK8|RON|SEA|p185-Ron	macrophage stimulating 1 receptor	protein-coding
107933	chr18	57803021	57803280	+	0	NA	5' UTR (NM_005603, exon 1 of 28)	5' UTR (NM_005603, exon 1 of 28)	165	NM_005603	5205		NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
161303	chr3	39385471	39386800	+	0	NA	intron (NM_001354798, intron 1 of 5)	intron (NM_001354798, intron 1 of 5)	2765	NM_017875	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
210856	chr7	101100071	101100850	+	0	NA	Intergenic	Intergenic	14979	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
39479	chr11	61003451	61003550	+	0	NA	intron (NM_006725, intron 1 of 12)	AluSz6|SINE|Alu	31820	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
8438	chr1	40661851	40662350	+	0	NA	intron (NM_014747, intron 1 of 7)	L2b|LINE|L2	3582	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
90974	chr17	2698921	2699280	+	0	NA	intron (NM_015229, intron 9 of 25)	intron (NM_015229, intron 9 of 25)	-6181	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
167495	chr3	129178621	129179030	+	0	NA	intron (NM_001127196, intron 1 of 4)	AluY|SINE|Alu	5071	NM_001127196	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
89192	chr16	88574201	88574630	+	0	NA	intron (NM_144604, intron 1 of 17)	AluSx1|SINE|Alu	4012	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
48989	chr12	13179251	13180150	+	0	NA	Intergenic	Intergenic	-17026	NM_001423	2012		NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
38917	chr11	47424101	47424900	+	0	NA	intron (NM_002804, intron 4 of 11)	intron (NM_002804, intron 4 of 11)	1939	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
64911	chr14	35408051	35408150	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3351	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
180149	chr5	1375571	1375730	+	0	NA	intron (NR_125810, intron 1 of 1)	MER66C|LTR|ERV1	4423	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
151620	chr22	12602471	12602630	+	0	NA	Intergenic	CpG	705144	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
132471	chr2	105886251	105886550	+	0	NA	intron (NM_001004720, intron 3 of 3)	MER5A|DNA|hAT-Charlie	34553	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
3849	chr1	16920521	16920780	+	0	NA	Intergenic	MIR|SINE|MIR	-1281	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
44808	chr11	113858671	113859030	+	0	NA	intron (NM_020886, intron 1 of 24)	AluSx1|SINE|Alu	16722	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
112423	chr19	6260801	6261530	+	0	NA	intron (NM_005934, intron 3 of 11)	intron (NM_005934, intron 3 of 11)	18810	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
145964	chr20	46310651	46312000	+	0	NA	Intergenic	Intergenic	-2827	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
75632	chr15	67180601	67180800	+	0	NA	intron (NM_001145104, intron 3 of 6)	intron (NM_001145104, intron 3 of 6)	14545	NM_001145104	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
30204	chr10	74824751	74827580	+	0	NA	promoter-TSS (NM_001370132)	promoter-TSS (NM_001370132)	-248	NM_001256469	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
147177	chr20	56465171	56465530	+	0	NA	Intergenic	AluSg|SINE|Alu	-3235	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
165318	chr3	87633951	87634050	+	0	NA	Intergenic	(CTCTCCCCCT)n|Simple_repeat|Simple_repeat	-158706	NM_001322208	3355		NM_000866	ENSG00000179097	HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	5-hydroxytryptamine receptor 1F	protein-coding
144220	chr20	34368101	34368530	+	0	NA	intron (NM_031483, intron 1 of 24)	intron (NM_031483, intron 1 of 24)	5042	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
92151	chr17	7656071	7656230	+	0	NA	3' UTR (NM_001678, exon 7 of 7)	3' UTR (NM_001678, exon 7 of 7)	5224	NM_001678	482		NM_001678	ENSG00000129244	ATP1B2	AMOG	ATPase Na+/K+ transporting subunit beta 2	protein-coding
108882	chr18	79399071	79399600	+	0	NA	promoter-TSS (NM_001278672)	promoter-TSS (NM_001278672)	-939	NM_001278673	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
122881	chr19	50508721	50509100	+	0	NA	intron (NM_138334, intron 2 of 4)	intron (NM_138334, intron 2 of 4)	2281	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
118905	chr19	38719101	38719530	+	0	NA	intron (NM_004924, intron 11 of 20)	intron (NM_004924, intron 11 of 20)	25159	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
171252	chr3	195850771	195851950	+	0	NA	intron (NR_134939, intron 1 of 1)	MER20B|DNA|hAT-Charlie	2868	NR_134940	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
45820	chr11	119358371	119358800	+	0	NA	intron (NM_171997, intron 6 of 11)	AluSx1|SINE|Alu	5623	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
13953	chr1	120354071	120355530	+	0	NA	Intergenic	CpG	-60227	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
197809	chr6	87704651	87705730	+	0	NA	Intergenic	AluJr|SINE|Alu	-2957	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
178603	chr4	151993601	151993800	+	0	NA	Intergenic	MER50|LTR|ERV1	-107053	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
188379	chr5	152076971	152077350	+	0	NA	intron (NR_109876, intron 1 of 2)	L1HS|LINE|L1	118262	NR_109876	101927115		NR_109876	ENSG00000254226	LINC01933	CTB-12O2.1	long intergenic non-protein coding RNA 1933	ncRNA
69244	chr14	92898171	92898780	+	0	NA	Intergenic	Intergenic	9007	NR_135253	101929002		NR_135253	ENSG00000258499	LINC02287	-	long intergenic non-protein coding RNA 2287	ncRNA
175688	chr4	77052151	77052680	+	0	NA	intron (NM_001348132, intron 6 of 6)	intron (NM_001348132, intron 6 of 6)	22495	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
87676	chr16	74604751	74605450	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	2014	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
187225	chr5	141084421	141084680	+	0	NA	Intergenic	Intergenic	-6519	NR_105056	101926905		NR_105056		PCDHB1-AS1	-	PCDHB1 antisense RNA 1	ncRNA
118655	chr19	37314471	37314830	+	0	NA	intron (NR_138103, intron 1 of 8)	AluSz|SINE|Alu	1813	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
94074	chr17	27476271	27476430	+	0	NA	intron (NM_014238, intron 1 of 20)	intron (NM_014238, intron 1 of 20)	4386	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
111458	chr19	3868721	3869480	+	0	NA	promoter-TSS (NM_001145640)	promoter-TSS (NM_001145640)	-62	NR_027149	23217		NM_015174	ENSG00000105278	ZFR2	KIAA1086	zinc finger RNA binding protein 2	protein-coding
129391	chr2	68824171	68824530	+	0	NA	intron (NM_001364820, intron 9 of 9)	intron (NM_001364820, intron 9 of 9)	47047	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
51877	chr12	53496221	53496800	+	0	NA	intron (NM_006301, intron 1 of 14)	intron (NM_006301, intron 1 of 14)	2948	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
92858	chr17	16352551	16354330	+	0	NA	promoter-TSS (NM_181716)	promoter-TSS (NM_181716)	29	NM_181716	201161		NM_181716	ENSG00000166582	CENPV	3110013H01Rik|CENP-V|PRR6|p30	centromere protein V	protein-coding
93338	chr17	18212271	18213130	+	0	NA	Intergenic	Intergenic	-12935	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
60011	chr13	32528551	32528850	+	0	NA	intron (NM_001278432, intron 2 of 9)	intron (NM_001278432, intron 2 of 9)	10095	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
177398	chr4	112273501	112274330	+	0	NA	TTS (NM_052864)	TTS (NM_052864)	11989	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
101812	chr17	73431021	73431280	+	0	NA	intron (NM_001144952, intron 11 of 44)	MER58A|DNA|hAT-Charlie	-82533	NR_135635	101928251		NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA
175415	chr4	70927471	70928100	+	0	NA	intron (NM_173468, intron 1 of 5)	intron (NM_173468, intron 1 of 5)	25416	NM_173468	92597		NM_173468	ENSG00000173542	MOB1B	MATS2|MOB4A|MOBKL1A	MOB kinase activator 1B	protein-coding
83515	chr16	27452251	27452580	+	0	NA	TTS (NM_181079)	TTS (NM_181079)	978	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
66313	chr14	61412851	61412950	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	91457	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
142079	chr20	2457651	2457950	+	0	NA	Intergenic	AluSx|SINE|Alu	5247	NR_003684	100113378		NR_003684		SNORD119	-	small nucleolar RNA, C/D box 119	snoRNA
174013	chr4	26400251	26400350	+	0	NA	intron (NM_015874, intron 2 of 10)	MER20|DNA|hAT-Charlie	57160	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
232255	chr9	134403601	134404630	+	0	NA	intron (NM_001291920, intron 2 of 9)	intron (NM_001291920, intron 2 of 9)	-2445	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
178953	chr4	159107751	159107850	+	0	NA	intron (NM_001351724, intron 1 of 30)	intron (NM_001351724, intron 1 of 30)	3749	NM_001351724	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
57459	chr12	121922271	121922630	+	0	NA	intron (NM_144668, intron 2 of 21)	L2c|LINE|L2	3858	NM_001178003	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
82680	chr16	19883221	19883890	+	0	NA	intron (NM_001304771, intron 1 of 3)	intron (NM_001304771, intron 1 of 3)	1293	NM_016235	51704		NM_016235	ENSG00000167191	GPRC5B	MLC3|RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding
103365	chr17	78119801	78120200	+	0	NA	intron (NM_001374594, intron 12 of 18)	intron (NM_001374594, intron 12 of 18)	8755	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
154221	chr22	31526101	31526730	+	0	NA	intron (NM_001258326, intron 2 of 30)	THE1C|LTR|ERVL-MaLR	29879	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
63979	chr14	22229921	22230330	+	0	NA	Intergenic	Intergenic	202628	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
58196	chr12	126588701	126588900	+	0	NA	Intergenic	Intergenic	101518	NR_110034	100996671		NR_110034	ENSG00000256732	LOC100996671	-	uncharacterized LOC100996671	ncRNA
236892	chrX	84501851	84502430	+	0	NA	intron (NM_001177478, intron 1 of 9)	intron (NM_001177478, intron 1 of 9)	313	NM_001177479	139324		NM_144657	ENSG00000165259	HDX	CXorf43|D030011N01Rik	highly divergent homeobox	protein-coding
4051	chr1	19010921	19011650	+	0	NA	Intergenic	Intergenic	-54609	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
150229	chr21	41208071	41208230	+	0	NA	intron (NM_138991, intron 1 of 7)	intron (NM_138991, intron 1 of 7)	-22911	NR_148920	191585		NR_148920	ENSG00000280109	PLAC4	C21orf115|PRED78	placenta enriched 4	ncRNA
39600	chr11	61331071	61331430	+	0	NA	intron (NM_001923, intron 2 of 26)	intron (NM_001923, intron 2 of 26)	1855	NM_001923	1642		NM_001923	ENSG00000167986	DDB1	DDBA|UV-DDB1|WHIKERS|XAP1|XPCE|XPE|XPE-BF	damage specific DNA binding protein 1	protein-coding
122387	chr19	49420301	49420600	+	0	NA	Intergenic	Intergenic	2991	NM_178449	113091		NM_178449	ENSG00000142538	PTH2	TIP39	parathyroid hormone 2	protein-coding
96016	chr17	39235601	39236300	+	0	NA	Intergenic	Intergenic	-1820	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
92410	chr17	8378971	8379500	+	0	NA	intron (NM_001315531, intron 3 of 3)	AluSq2|SINE|Alu	-2531	NM_001304947	124751		NM_213597	ENSG00000184619	KRBA2	-	KRAB-A domain containing 2	protein-coding
80802	chr16	3371921	3372000	+	0	NA	5' UTR (NM_001190476, exon 1 of 1)	5' UTR (NM_001190476, exon 1 of 1)	708	NM_001190476	100463285		NM_001190476		MTRNR2L4	HN4	MT-RNR2 like 4 (pseudogene)	pseudo
38652	chr11	46374101	46374500	+	0	NA	intron (NM_001199266, intron 15 of 30)	intron (NM_001199266, intron 15 of 30)	-2102	NR_039837	100616368		NR_039837	ENSG00000264102	MIR4688	mir-4688	microRNA 4688	ncRNA
1511	chr1	2839801	2840680	+	0	NA	Intergenic	MER51A|LTR|ERV1	-39372	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
133052	chr2	112204471	112204650	+	0	NA	Intergenic	L1M4|LINE|L1	50482	NM_032494	84524		NM_032494	ENSG00000144161	ZC3H8	Fliz1|ZC3HDC8	zinc finger CCCH-type containing 8	protein-coding
217915	chr8	37916171	37916730	+	0	NA	Intergenic	Intergenic	-16953	NM_025151	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
212350	chr7	127585001	127586380	+	0	NA	promoter-TSS (NM_024523)	promoter-TSS (NM_024523)	-94	NM_024523	79571		NM_024523	ENSG00000179562	GCC1	GCC1P|GCC88	GRIP and coiled-coil domain containing 1	protein-coding
222030	chr8	130186801	130187000	+	0	NA	intron (NM_001362924, intron 7 of 30)	intron (NM_001362924, intron 7 of 30)	-102132	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
118532	chr19	36036901	36037530	+	0	NA	intron (NM_001331102, intron 3 of 3)	intron (NM_001331102, intron 3 of 3)	-4342	NM_015526	25999		NM_015526	ENSG00000105270	CLIP3	CLIPR-59|CLIPR59|RSNL1	CAP-Gly domain containing linker protein 3	protein-coding
55378	chr12	104302151	104302600	+	0	NA	intron (NM_001261446, intron 2 of 13)	intron (NM_001261446, intron 2 of 13)	-1364	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
154843	chr22	37082251	37082550	+	0	NA	intron (NM_153609, intron 10 of 17)	intron (NM_153609, intron 10 of 17)	21256	NM_153609	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
129897	chr2	73213821	73215630	+	0	NA	intron (NM_006062, intron 1 of 12)	intron (NM_006062, intron 1 of 12)	480	NM_006062	10322		NM_006062	ENSG00000135632	SMYD5	NN8-4AG|RAI15|RRG1|ZMYND23	SMYD family member 5	protein-coding
43651	chr11	85663171	85664600	+	0	NA	promoter-TSS (NR_165399)	promoter-TSS (NR_165399)	-284	NR_165399	58487		NM_021212	ENSG00000137504	CREBZF	SMILE|ZF	CREB/ATF bZIP transcription factor	protein-coding
75415	chr15	65774671	65774830	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	17543	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
184141	chr5	94968551	94968750	+	0	NA	intron (NM_024717, intron 2 of 22)	intron (NM_024717, intron 2 of 22)	113216	NM_001002796	79772		NM_024717	ENSG00000175471	MCTP1	-	multiple C2 and transmembrane domain containing 1	protein-coding
55667	chr12	107369671	107370100	+	0	NA	intron (NM_001347944, intron 1 of 14)	MIRc|SINE|MIR	49297	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
156755	chr22	41836751	41837500	+	0	NA	intron (NR_103834, intron 1 of 21)	L2b|LINE|L2	-2460	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
129436	chr2	69475701	69476230	+	0	NA	intron (NM_001371575, intron 20 of 20)	intron (NM_001371575, intron 20 of 20)	-36398	NM_001374284	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
125642	chr2	19559701	19559900	+	0	NA	Intergenic	Intergenic	-201177	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
76580	chr15	75337471	75337630	+	0	NA	intron (NM_001284379, intron 1 of 5)	AluSq2|SINE|Alu	1487	NM_001321844	54939		NM_017828	ENSG00000140365	COMMD4	-	COMM domain containing 4	protein-coding
8904	chr1	43966601	43967000	+	0	NA	intron (NM_014652, intron 17 of 19)	intron (NM_014652, intron 17 of 19)	-3210	NM_001039589	1802		NM_001384	ENSG00000132768	DPH2	DEDSSH2|DPH2L2	diphthamide biosynthesis 2	protein-coding
83134	chr16	22787851	22787950	+	0	NA	Intergenic	CR1-3_Croc|LINE|CR1	-26262	NM_006043	9956		NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate-glucosamine 3-sulfotransferase 2	protein-coding
26012	chr10	12221971	12222430	+	0	NA	intron (NM_006023, intron 6 of 12)	intron (NM_006023, intron 6 of 12)	26012	NM_006023	8872		NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
192134	chr6	16760901	16762700	+	0	NA	promoter-TSS (NM_001357857)	promoter-TSS (NM_001357857)	-310	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
157145	chr22	42853301	42853500	+	0	NA	intron (NM_001142293, intron 1 of 14)	intron (NM_001142293, intron 1 of 14)	3873	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
35225	chr11	828171	828330	+	0	NA	promoter-TSS (NM_173584)	promoter-TSS (NM_173584)	-10	NM_173584	283229		NM_173584	ENSG00000177685	CRACR2B	EFCAB4A	calcium release activated channel regulator 2B	protein-coding
233609	chrX	357351	358280	+	0	NA	intron (NM_013239, intron 2 of 12)	intron (NM_013239, intron 2 of 12)	29092	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
135379	chr2	160475171	160475400	+	0	NA	intron (NM_016836, intron 1 of 13)	LTR33|LTR|ERVL	18522	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
205377	chr7	14313651	14313750	+	0	NA	intron (NM_001350707, intron 23 of 25)	L1PA3|LINE|L1	-322275	NM_001163148	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
103607	chr17	78724401	78724950	+	0	NA	promoter-TSS (NM_001292018)	promoter-TSS (NM_001292018)	-925	NM_001292018	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
219825	chr8	81684771	81684930	+	0	NA	intron (NM_001144879, intron 1 of 7)	intron (NM_001144879, intron 1 of 7)	1475	NM_005536	3612		NM_005536	ENSG00000133731	IMPA1	IMP|IMPA|MRT59	inositol monophosphatase 1	protein-coding
194852	chr6	34483421	34483680	+	0	NA	intron (NM_020804, intron 1 of 9)	intron (NM_020804, intron 1 of 9)	17474	NM_020804	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
163444	chr3	50599101	50599300	+	0	NA	Intergenic	Intergenic	12574	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
60640	chr13	42392251	42394050	+	0	NA	Intergenic	Intergenic	-31742	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
151174	chr21	44973351	44973450	+	0	NA	intron (NM_001316983, intron 5 of 5)	intron (NM_001316983, intron 5 of 5)	20686	NR_033840	727699		NR_033840	ENSG00000234880	LINC00163	C21orf134|NCRNA00163|NLC1-A|NLC1A	long intergenic non-protein coding RNA 163	ncRNA
88815	chr16	87405121	87406200	+	0	NA	TTS (NM_015144)	TTS (NM_015144)	13324	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
103957	chr17	79924401	79924700	+	0	NA	TTS (NR_110851)	TTS (NR_110851)	2175	NR_110850	101928766		NR_110850	ENSG00000262585	LINC01979	-	long intergenic non-protein coding RNA 1979	ncRNA
233959	chrX	2628421	2628880	+	0	NA	intron (NR_033380, intron 8 of 8)	MER34C2|LTR|ERV1	-13303	NR_037842	100359394		NR_037842	ENSG00000230542	LINC00102	NCRNA00102	long intergenic non-protein coding RNA 102	ncRNA
135073	chr2	156483751	156484050	+	0	NA	intron (NM_000408, intron 2 of 16)	intron (NM_000408, intron 2 of 16)	47521	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
192616	chr6	26064451	26065150	+	0	NA	Intergenic	AluSx|SINE|Alu	-8330	NM_005319	3006		NM_005319	ENSG00000187837	H1-2	H1.2|H1C|H1F2|H1s-1|HIST1H1C	H1.2 linker histone, cluster member	protein-coding
134475	chr2	143252771	143253130	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	123531	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
127183	chr2	38387721	38388100	+	0	NA	Intergenic	Intergenic	-9326	NM_001330462	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
131156	chr2	91523271	91523830	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	136399	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
168833	chr3	152251621	152252350	+	0	NA	intron (NM_001376839, intron 2 of 10)	L1MC4|LINE|L1	8353	NM_001376819	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
29154	chr10	68714351	68714650	+	0	NA	Intergenic	AluYi6|SINE|Alu	-6739	NM_001282960	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
41561	chr11	66324021	66324280	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-7106	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
66235	chr14	61336921	61337290	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	15662	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
45569	chr11	118834421	118834790	+	0	NA	Intergenic	Intergenic	-43441	NM_004397	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
12032	chr1	97901101	97901500	+	0	NA	intron (NM_001160301, intron 1 of 5)	intron (NM_001160301, intron 1 of 5)	19734	NM_000110	1806		NM_000110	ENSG00000188641	DPYD	DHP|DHPDHASE|DPD|DYPD	dihydropyrimidine dehydrogenase	protein-coding
142046	chr20	1733051	1733550	+	0	NA	Intergenic	LTR7|LTR|ERV1	-11008	NR_164369	105369219		NR_164369		SIRPB3P	-	signal regulatory protein beta 3, pseudogene	pseudo
231650	chr9	131635171	131636300	+	0	NA	intron (NM_001377935, intron 5 of 26)	intron (NM_001377935, intron 5 of 26)	15668	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
222217	chr8	133068221	133069330	+	0	NA	intron (NM_001045557, intron 1 of 7)	intron (NM_001045557, intron 1 of 7)	-8421	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
121061	chr19	45865451	45866030	+	0	NA	intron (NM_004497, intron 1 of 1)	intron (NM_004497, intron 1 of 1)	1414	NM_004497	3171		NM_004497	ENSG00000170608	FOXA3	FKHH3|HNF3G|TCF3G	forkhead box A3	protein-coding
175293	chr4	67699451	67700400	+	0	NA	intron (NM_018227, intron 1 of 32)	intron (NM_018227, intron 1 of 32)	1230	NM_018227	55236		NM_018227	ENSG00000033178	UBA6	E1-L2|MOP-4|UBE1L2	ubiquitin like modifier activating enzyme 6	protein-coding
205520	chr7	18355901	18356500	+	0	NA	intron (NM_001321896, intron 1 of 12)	intron (NM_001321896, intron 1 of 12)	66108	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
151402	chr21	45987921	45988700	+	0	NA	intron (NM_001848, intron 8 of 34)	CpG-18602	6540	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
115021	chr19	14084921	14085230	+	0	NA	intron (NM_001277378, intron 1 of 5)	intron (NM_001277378, intron 1 of 5)	708	NM_001277378	646457		NM_001277378	ENSG00000188032	C19orf67	-	chromosome 19 open reading frame 67	protein-coding
47845	chr12	6611251	6611750	+	0	NA	Intergenic	Intergenic	-4121	NM_001273	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
224513	chr9	19102291	19103980	+	0	NA	promoter-TSS (NM_001270890)	promoter-TSS (NM_001270890)	-231	NM_001270890	54801		NM_017645	ENSG00000147874	HAUS6	Dgt6|FAM29A	HAUS augmin like complex subunit 6	protein-coding
14710	chr1	145933721	145933980	+	0	NA	3' UTR (NM_153713, exon 6 of 6)	3' UTR (NM_153713, exon 6 of 6)	-6366	NM_005105	9939		NM_005105	ENSG00000265241	RBM8A	BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1	RNA binding motif protein 8A	protein-coding
186555	chr5	138462501	138462700	+	0	NA	Intergenic	AluY|SINE|Alu	-2879	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
160681	chr3	32248551	32248850	+	0	NA	intron (NM_001320308, intron 1 of 2)	AluJr4|SINE|Alu	10020	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
36497	chr11	6394571	6394730	+	0	NA	TTS (NM_145689)	TTS (NM_145689)	4176	NR_027400	6609		NM_000543	ENSG00000166311	SMPD1	ASM|ASMASE|NPD	sphingomyelin phosphodiesterase 1	protein-coding
196291	chr6	42996601	42996800	+	0	NA	intron (NM_180976, intron 2 of 15)	intron (NM_180976, intron 2 of 15)	12130	NM_001270476	5528		NM_006245	ENSG00000112640	PPP2R5D	B56D|B56delta|HJS1|MRD35	protein phosphatase 2 regulatory subunit B'delta	protein-coding
3691	chr1	16515601	16516200	+	0	NA	Intergenic	Intergenic	-1615	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
219547	chr8	77118751	77119080	+	0	NA	Intergenic	MIRb|SINE|MIR	-117871	NM_001172086	5828		NM_000318	ENSG00000164751	PEX2	PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3	peroxisomal biogenesis factor 2	protein-coding
188346	chr5	151564051	151564150	+	0	NA	intron (NM_001447, intron 2 of 23)	intron (NM_001447, intron 2 of 23)	27231	NM_001447	2196		NM_001447	ENSG00000086570	FAT2	CDHF8|CDHR9|HFAT2|MEGF1|SCA45	FAT atypical cadherin 2	protein-coding
231900	chr9	133083401	133083700	+	0	NA	intron (NR_001275, intron 1 of 4)	intron (NR_001275, intron 1 of 4)	1011	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
200440	chr6	135035201	135035650	+	0	NA	TTS (NM_001145207)	TTS (NM_001145207)	19397	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
59740	chr13	29924121	29924780	+	0	NA	intron (NR_047501, intron 1 of 1)	intron (NR_047501, intron 1 of 1)	2201	NR_047501	100861573		NR_047501	ENSG00000224405	LINC00572	-	long intergenic non-protein coding RNA 572	ncRNA
10169	chr1	61080701	61080930	+	0	NA	promoter-TSS (NM_001145512)	promoter-TSS (NM_001145512)	-924	NM_001145512	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
99863	chr17	55959621	55959700	+	0	NA	Intergenic	Intergenic	-193815	NM_001365758	162282		NM_153228	ENSG00000153930	ANKFN1	-	ankyrin repeat and fibronectin type III domain containing 1	protein-coding
45738	chr11	119120921	119122300	+	0	NA	promoter-TSS (NM_001351958)	promoter-TSS (NM_001351958)	30	NM_001351965	25988		NM_015517	ENSG00000172273	HINFP	HiNF-P|MIZF|ZNF743	histone H4 transcription factor	protein-coding
177730	chr4	122323051	122323350	+	0	NA	intron (NM_001384125, intron 64 of 87)	L1MCa|LINE|L1	-55811	NM_139243	132612		NM_139243	ENSG00000164113	ADAD1	Tenr	adenosine deaminase domain containing 1	protein-coding
233731	chrX	1366651	1366750	+	0	NA	intron (NM_001267713, intron 7 of 9).2	CpG	25413	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
167213	chr3	128430401	128430700	+	0	NA	Intergenic	Intergenic	-33044	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
170311	chr3	184342971	184343730	+	0	NA	intron (NM_144635, intron 5 of 5)	intron (NM_144635, intron 5 of 5)	4517	NM_001366133	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
35672	chr11	1875351	1875450	+	0	NA	intron (NM_001013254, intron 1 of 10)	intron (NM_001013254, intron 1 of 10)	4476	NM_001013255	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
67604	chr14	72532471	72532980	+	0	NA	intron (NM_001370288, intron 15 of 16)	Tigger1|DNA|TcMar-Tigger	15905	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
180176	chr5	1469971	1470330	+	0	NA	intron (NM_024830, intron 12 of 13)	intron (NM_024830, intron 12 of 13)	-24710	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
134562	chr2	144194401	144194800	+	0	NA	intron (NM_001354351, intron 7 of 15)	intron (NM_001354351, intron 7 of 15)	42739	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
167982	chr3	136726971	136727500	+	0	NA	intron (NM_005862, intron 1 of 33)	intron (NM_005862, intron 1 of 33)	25143	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
152225	chr22	20147971	20148130	+	0	NA	TTS (NM_013373)	TTS (NM_013373)	3005	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
150047	chr21	37376721	37376980	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	9293	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
195926	chr6	41787101	41788850	+	0	NA	TTS (NM_013397)	TTS (NM_013397)	281	NM_001382294	100188893		NM_001134493	ENSG00000214736	TOMM6	OBTP|TOM6	translocase of outer mitochondrial membrane 6	protein-coding
204778	chr7	5611071	5611950	+	0	NA	Intergenic	AluY|SINE|Alu	18694	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
108750	chr18	77113501	77113880	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	19093	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
234251	chrX	13095371	13095530	+	0	NA	Intergenic	Intergenic	-50830	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
58358	chr12	131631971	131632330	+	0	NA	Intergenic	L1ME1|LINE|L1	15971	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
41292	chr11	65865121	65865380	+	0	NA	exon (NM_001350283, exon 14 of 16)	exon (NM_001350283, exon 14 of 16)	4817	NR_146598	80198		NM_025128	ENSG00000172732	MUS81	SLX3	MUS81 structure-specific endonuclease subunit	protein-coding
9773	chr1	53431551	53432300	+	0	NA	Intergenic	Intergenic	8095	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
79439	chr16	708171	708480	+	0	NA	Intergenic	L2b|LINE|L2	-2524	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
23879	chr1	234862921	234863180	+	0	NA	Intergenic	Intergenic	100949	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
124885	chr2	8346051	8346900	+	0	NA	Intergenic	Intergenic	-18056	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
122014	chr19	48603521	48604200	+	0	NA	exon (NM_017708, exon 6 of 7)	exon (NM_017708, exon 6 of 7)	-2882	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
81264	chr16	4624261	4626380	+	0	NA	intron (NM_001142291, intron 1 of 15)	MIR1_Amn|SINE|MIR	494	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
145132	chr20	38816301	38816980	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	10943	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
40743	chr11	64831521	64832180	+	0	NA	intron (NM_017525, intron 27 of 36)	L2c|LINE|L2	12803	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
51367	chr12	51823371	51823530	+	0	NA	intron (NM_001384995, intron 1 of 1)	L4_A_Mam|LINE|RTE-X	8467	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
117061	chr19	19010351	19010850	+	0	NA	intron (NR_147914, intron 4 of 11)	intron (NR_147914, intron 4 of 11)	22917	NR_147914	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
207560	chr7	44880371	44881030	+	0	NA	3' UTR (NM_033224, exon 1 of 1)	3' UTR (NM_033224, exon 1 of 1)	1100	NR_039801	100616393		NR_039801	ENSG00000284261	MIR4657	mir-4657	microRNA 4657	ncRNA
43359	chr11	76784351	76784450	+	0	NA	intron (NM_001318478, intron 1 of 1)	CpG	252	NM_001318479	25987		NM_015516	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
42839	chr11	73096721	73096980	+	0	NA	intron (NM_014824, intron 2 of 19)	L1M4|LINE|L1	45468	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
210580	chr7	100364021	100364700	+	0	NA	intron (NM_001371931, intron 4 of 4)	L1MB2|LINE|L1	6357	NM_178238	29990		NM_013440	ENSG00000121716	PILRB	FDFACT1|FDFACT2	paired immunoglobin like type 2 receptor beta	protein-coding
100081	chr17	58304101	58304950	+	0	NA	intron (NM_001261835, intron 30 of 31)	intron (NM_001261835, intron 30 of 31)	-20925	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
83840	chr16	28868271	28868430	+	0	NA	intron (NM_001145812, intron 3 of 9)	AluY|SINE|Alu	4357	NM_015503	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
113755	chr19	10506701	10507050	+	0	NA	Intergenic	AluJo|SINE|Alu	-3519	NM_203500	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
135397	chr2	160590051	160591130	+	0	NA	Intergenic	(CCTTCC)n|Simple_repeat|Simple_repeat	-96783	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
114235	chr19	11496101	11497030	+	0	NA	promoter-TSS (NR_107014)	promoter-TSS (NR_107014)	-943	NR_107014	102465856		NR_107014	ENSG00000274713	MIR7974	hsa-mir-7974	microRNA 7974	ncRNA
205399	chr7	16397121	16397580	+	0	NA	intron (NR_160656, intron 2 of 7)	(GTGACAC)n|Simple_repeat|Simple_repeat	24188	NM_001101417	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
16109	chr1	153633521	153634770	+	0	NA	promoter-TSS (NM_015607)	promoter-TSS (NM_015607)	79	NM_015607	26097		NM_015607	ENSG00000160679	CHTOP	C10orf77|C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704	chromatin target of PRMT1	protein-coding
111183	chr19	3371901	3372300	+	0	NA	intron (NM_001245002, intron 1 of 10)	AluSx|SINE|Alu	5517	NM_001245004	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
6920	chr1	31643971	31646000	+	0	NA	promoter-TSS (NR_033686)	promoter-TSS (NR_033686)	-109	NM_012392	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
45493	chr11	118623271	118623980	+	0	NA	intron (NM_001144759, intron 4 of 20)	intron (NM_001144759, intron 4 of 20)	16010	NM_001144759	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
139489	chr2	224522501	224522700	+	0	NA	intron (NM_003590, intron 3 of 15)	AluY|SINE|Alu	47355	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
209487	chr7	76624401	76625250	+	0	NA	intron (NM_152992, intron 3 of 4)	intron (NM_152992, intron 3 of 4)	2478	NM_012230	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
149200	chr21	24189721	24189800	+	0	NA	Intergenic	Intergenic	131617	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
137687	chr2	197482251	197482750	+	0	NA	Intergenic	AluSp|SINE|Alu	4403	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
159201	chr3	12877521	12878080	+	0	NA	intron (NR_136189, intron 2 of 2)	(GT)n|Simple_repeat|Simple_repeat	7411	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
207689	chr7	45718871	45719030	+	0	NA	3' UTR (NM_021116, exon 20 of 20)	3' UTR (NM_021116, exon 20 of 20)	50068	NR_024271	641977		NR_024271	ENSG00000291207	SEPTIN7P2	SEPT13|SEPT7B|SEPT7P2	septin 7 pseudogene 2	pseudo
123863	chr19	55261401	55261600	+	0	NA	TTS (NM_001297600)	TTS (NM_001297600)	-2483	NM_014931	22870		NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding
210669	chr7	100536921	100537380	+	0	NA	Intergenic	AluSz|SINE|Alu	-2053	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
44607	chr11	108559421	108559880	+	0	NA	intron (NM_001308019, intron 2 of 6)	intron (NM_001308019, intron 2 of 6)	-7421	NM_001144763	23086		NM_015065	ENSG00000110723	EXPH5	EBS4|SLAC2-B|SLAC2B	exophilin 5	protein-coding
189364	chr5	172478371	172478530	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-23925	NM_001017995	285590		NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
2753	chr1	10682251	10682550	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	114246	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
118113	chr19	34525651	34525950	+	0	NA	Intergenic	AluSz|SINE|Alu	19586	NR_146880	100129800		NR_146880		ZNF807P	ZNF181P1|ZNF807	zinc finger protein 807, pseudogene	pseudo
120557	chr19	44962951	44963250	+	0	NA	intron (NM_001282175, intron 2 of 13)	AluSz|SINE|Alu	7720	NM_001294	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
158193	chr22	50238451	50238750	+	0	NA	intron (NM_020461, intron 2 of 24)	AluY|SINE|Alu	6423	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
412	chr1	1073121	1075430	+	0	NA	promoter-TSS (NM_001205252)	promoter-TSS (NM_001205252)	31	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
173703	chr4	15725751	15726230	+	0	NA	intron (NM_004334, intron 8 of 8)	AluJb|SINE|Alu	22925	NM_004334	683		NM_004334	ENSG00000109743	BST1	CD157|cADPR2	bone marrow stromal cell antigen 1	protein-coding
173954	chr4	25913401	25914930	+	0	NA	promoter-TSS (NM_001145432)	promoter-TSS (NM_001145432)	-27	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
194919	chr6	34882551	34882650	+	0	NA	intron (NM_005643, intron 2 of 4)	AluSx|SINE|Alu	5442	NM_005643	6882		NM_005643	ENSG00000064995	TAF11	MGC:15243|PRO2134|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding
231365	chr9	130662801	130663100	+	0	NA	Intergenic	CpG	-1644	NM_021619	59335		NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding
149081	chr21	15742271	15742430	+	0	NA	intron (NM_001352560, intron 1 of 23)	intron (NM_001352560, intron 1 of 23)	12368	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
198059	chr6	90215201	90215400	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	81543	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
202336	chr6	157527221	157527680	+	0	NA	intron (NM_024630, intron 1 of 8)	intron (NM_024630, intron 1 of 8)	-1682	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
188891	chr5	159972021	159973000	+	0	NA	3' UTR (NM_000679, exon 2 of 2)	3' UTR (NM_000679, exon 2 of 2)	-36590	NM_001282500	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
186389	chr5	135036421	135036680	+	0	NA	intron (NR_161235, intron 1 of 5)	intron (NR_161235, intron 1 of 5)	-2322	NM_002653	5307		NM_002653	ENSG00000069011	PITX1	BFT|CCF|LBNBG|POTX|PTX1	paired like homeodomain 1	protein-coding
197966	chr6	89985351	89985650	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	91031	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
5543	chr1	25858971	25860430	+	0	NA	promoter-TSS (NM_001287490)	promoter-TSS (NM_001287490)	-242	NM_001287490	79000		NM_024037	ENSG00000127423	AUNIP	AIBP|C1orf135	aurora kinase A and ninein interacting protein	protein-coding
134766	chr2	147293551	147294250	+	0	NA	Intergenic	L1MC4|LINE|L1	-550617	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
63602	chr14	20491451	20491980	+	0	NA	Intergenic	Intergenic	-12518	NM_001012975	338879		NM_001012975	ENSG00000182545	RNASE10	RAH1|RNASE9	ribonuclease A family member 10 (inactive)	protein-coding
233812	chrX	1469501	1470100	+	0	NA	intron (NM_178129, intron 1 of 1)	AluY|SINE|Alu	-16038	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
21237	chr1	204258471	204258630	+	0	NA	intron (NM_014935, intron 8 of 22)	intron (NM_014935, intron 8 of 22)	-44562	NM_198447	127845		NM_198447	ENSG00000174567	GOLT1A	CGI-141|GOT1|GOT1B|HMFN1187|YMR292W|hGOT1b	golgi transport 1A	protein-coding
100200	chr17	59106021	59107400	+	0	NA	non-coding (NR_148347, exon 1 of 23)	non-coding (NR_148347, exon 1 of 23)	170	NM_001353082	4591		NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
207717	chr7	47578621	47578880	+	0	NA	intron (NM_022748, intron 1 of 30)	intron (NM_022748, intron 1 of 30)	3361	NM_022748	64759		NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
137719	chr2	197692951	197693480	+	0	NA	Intergenic	L1PA2|LINE|L1	-12154	NM_138395	92935		NM_138395	ENSG00000247626	MARS2	COXPD25|MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
106872	chr18	24138501	24139680	+	0	NA	promoter-TSS (NM_012189)	promoter-TSS (NM_012189)	28	NM_012189	26256		NM_012189	ENSG00000154040	CABYR	CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2	calcium binding tyrosine phosphorylation regulated	protein-coding
150404	chr21	42319321	42319900	+	0	NA	Intergenic	Intergenic	-4201	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
136464	chr2	177165871	177166830	+	0	NA	Intergenic	Intergenic	46061	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
173604	chr4	10654951	10656050	+	0	NA	intron (NM_052964, intron 2 of 18)	L1ME3E|LINE|L1	29268	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
162578	chr3	48674021	48674630	+	0	NA	3' UTR (NM_016453, exon 13 of 13)	3' UTR (NM_016453, exon 13 of 13)	10557	NR_111921	102724368		NR_111921	ENSG00000228350	LINC02585	CELSR3-AS1	long intergenic non-protein coding RNA 2585	ncRNA
98259	chr17	46182851	46183680	+	0	NA	intron (NM_001193465, intron 2 of 15)	L2c|LINE|L2	9517	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
183938	chr5	87411651	87412100	+	0	NA	intron (NM_001239, intron 1 of 8)	intron (NM_001239, intron 1 of 8)	1029	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
18383	chr1	161387501	161387980	+	0	NA	Intergenic	LTR81A|LTR|Gypsy	-19864	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
92657	chr17	10631251	10631350	+	0	NA	intron (NM_002470, intron 36 of 40)	intron (NM_002470, intron 36 of 40)	26009	NM_002470	4621		NM_002470	ENSG00000109063	MYH3	CPSFS1A|CPSFS1B|CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE	myosin heavy chain 3	protein-coding
164332	chr3	57856621	57856930	+	0	NA	intron (NR_165328, intron 6 of 22)	Tigger3b|DNA|TcMar-Tigger	-33139	NM_001311178	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
129879	chr2	73109451	73109950	+	0	NA	intron (NM_001371272, intron 1 of 5)	intron (NM_001371272, intron 1 of 5)	3248	NM_001371272	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
51678	chr12	53077651	53077950	+	0	NA	intron (NM_032840, intron 1 of 10)	L2b|LINE|L2	1590	NM_032840	84926		NM_032840	ENSG00000167778	SPRYD3	-	SPRY domain containing 3	protein-coding
32084	chr10	101131171	101132500	+	0	NA	promoter-TSS (NR_130722)	promoter-TSS (NR_130722)	535	NM_005521	3195		NM_005521	ENSG00000107807	TLX1	HOX11|TCL3	T cell leukemia homeobox 1	protein-coding
78156	chr15	90414601	90415030	+	0	NA	intron (NM_003870, intron 2 of 37)	L2|LINE|L2	26573	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
159080	chr3	12003771	12003930	+	0	NA	promoter-TSS (NM_003178)	promoter-TSS (NM_003178)	-510	NM_003178	6854		NM_003178	ENSG00000157152	SYN2	SYNII	synapsin II	protein-coding
3024	chr1	12118471	12119100	+	0	NA	intron (NM_001281430, intron 7 of 13)	LTR41B|LTR|ERVL	-48158	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
172362	chr4	1743221	1743680	+	0	NA	intron (NM_006342, intron 13 of 15)	AluSg|SINE|Alu	21929	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
31372	chr10	93826721	93827180	+	0	NA	Intergenic	Intergenic	-67028	NM_001345993	159371		NM_153226	ENSG00000176273	SLC35G1	C10orf60|POST|TMEM20	solute carrier family 35 member G1	protein-coding
19789	chr1	182396601	182397050	+	0	NA	Intergenic	Intergenic	3842	NM_172000	127670		NM_172000	ENSG00000203730	TEDDM1	EDDM9|Epdd1|HE9|HEL-S-45e|TMEM45C	transmembrane epididymal protein 1	protein-coding
86862	chr16	67943121	67943380	+	0	NA	TTS (NM_005072)	TTS (NM_005072)	870	NM_000229	3931		NM_000229	ENSG00000213398	LCAT	-	lecithin-cholesterol acyltransferase	protein-coding
197998	chr6	90078401	90079300	+	0	NA	intron (NM_021813, intron 5 of 8)	MIRc|SINE|MIR	184381	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
95279	chr17	35515371	35515730	+	0	NA	intron (NM_001363830, intron 2 of 4)	AluSx|SINE|Alu	22311	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
91271	chr17	4074751	4075550	+	0	NA	exon (NM_015113, exon 23 of 55)	exon (NM_015113, exon 23 of 55)	67880	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
94246	chr17	28682551	28682950	+	0	NA	exon (NM_001320755, exon 15 of 38)	exon (NM_001320755, exon 15 of 38)	20545	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
28090	chr10	43381621	43382350	+	0	NA	Intergenic	Intergenic	10341	NM_001184963	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
74149	chr15	55267201	55268630	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	2371	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
69283	chr14	93075521	93075780	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	8198	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
228985	chr9	113562721	113562980	+	0	NA	intron (NM_001276261, intron 10 of 14)	MIRc|SINE|MIR	-2104	NM_134427	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
222854	chr8	142632001	142632480	+	0	NA	Intergenic	Intergenic	-6356	NR_134305	101928087		NR_134305	ENSG00000277332	LOC101928087	-	uncharacterized LOC101928087	ncRNA
75176	chr15	64701771	64702130	+	0	NA	intron (NM_002537, intron 1 of 4)	intron (NM_002537, intron 1 of 4)	1331	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
35909	chr11	2419521	2420030	+	0	NA	intron (NM_014555, intron 4 of 23)	intron (NM_014555, intron 4 of 23)	3270	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
79087	chr16	176051	177250	+	0	NA	promoter-TSS (NM_000558)	promoter-TSS (NM_000558)	-30	NM_000558	3039		NM_000558	ENSG00000206172	HBA1	ECYT7|HBA-T3|HBH|METHBA	hemoglobin subunit alpha 1	protein-coding
186083	chr5	134104761	134106250	+	0	NA	Intergenic	MIRb|SINE|MIR	-9176	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
31901	chr10	100349071	100349630	+	0	NA	intron (NM_005063, intron 2 of 5)	intron (NM_005063, intron 2 of 5)	2117	NM_005063	6319		NM_005063	ENSG00000099194	SCD	FADS5|MSTP008|SCD1|SCDOS|hSCD1	stearoyl-CoA desaturase	protein-coding
212801	chr7	130242371	130242750	+	0	NA	Intergenic	Intergenic	-24303	NM_001869	1358		NM_001869	ENSG00000158516	CPA2	-	carboxypeptidase A2	protein-coding
134798	chr2	147913621	147914080	+	0	NA	intron (NM_001278580, intron 4 of 10)	(A)n|Simple_repeat|Simple_repeat	68821	NM_001616	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
198353	chr6	105292621	105293130	+	0	NA	intron (NM_002726, intron 10 of 14)	Tigger1|DNA|TcMar-Tigger	110207	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
66058	chr14	58375251	58375750	+	0	NA	Intergenic	Intergenic	-20430	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
10877	chr1	78045421	78046430	+	0	NA	promoter-TSS (NM_017655)	promoter-TSS (NM_017655)	-41	NM_017655	54810		NM_017655	ENSG00000137960	GIPC2	SEMCAP-2|SEMCAP2	GIPC PDZ domain containing family member 2	protein-coding
78398	chr15	91942871	91943340	+	0	NA	intron (NM_013272, intron 2 of 9)	L1MB2|LINE|L1	88801	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
46894	chr11	134068791	134070450	+	0	NA	intron (NM_032801, intron 1 of 8)	CpG	548	NM_032801	83700		NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
224132	chr9	4738371	4738530	+	0	NA	intron (NM_001199853, intron 1 of 4)	AluSq2|SINE|Alu	2752	NM_001199852	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
28065	chr10	43294241	43295600	+	0	NA	Intergenic	Intergenic	-27855	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
118736	chr19	38304121	38304580	+	0	NA	promoter-TSS (NM_001317801)	promoter-TSS (NM_001317801)	99	NM_033520	64073		NM_022125	ENSG00000167644	C19orf33	H2RSP|IMUP|IMUP-1|IMUP-2	chromosome 19 open reading frame 33	protein-coding
150172	chr21	39186571	39187350	+	0	NA	3' UTR (NM_018963, exon 42 of 42)	3' UTR (NM_018963, exon 42 of 42)	-3446	NM_203433	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
65187	chr14	49625671	49626000	+	0	NA	exon (NM_001378453, exon 2 of 2)	exon (NM_001378453, exon 2 of 2)	5036	NM_002408	4247		NM_002408	ENSG00000168282	MGAT2	CDG2A|CDGS2|GLCNACTII|GNT-II|GNT2	alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
183074	chr5	73605351	73605650	+	0	NA	Intergenic	Intergenic	-20658	NM_001080479	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
221915	chr8	129495451	129495750	+	0	NA	intron (NR_130917, intron 1 of 3)	intron (NR_130917, intron 1 of 3)	-11458	NR_037457	100500839		NR_037457	ENSG00000263763	MIR3686	-	microRNA 3686	ncRNA
69076	chr14	92035051	92035550	+	0	NA	intron (NM_004239, intron 1 of 20)	AluSx1|SINE|Alu	4759	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
158342	chr22	50453821	50454780	+	0	NA	intron (NM_002972, intron 36 of 40)	intron (NM_002972, intron 36 of 40)	20735	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
24242	chr1	236185521	236185780	+	0	NA	intron (NM_003272, intron 5 of 6)	AluJb|SINE|Alu	43111	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
87132	chr16	69112621	69113130	+	0	NA	intron (NM_001199280, intron 2 of 3)	intron (NM_001199280, intron 2 of 3)	5335	NM_005329	3038		NM_005329	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
90121	chr16	90117171	90117400	+	0	NA	intron (NR_126161, intron 3 of 3)	intron (NR_126161, intron 3 of 3)	15021	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
204495	chr7	4767851	4768350	+	0	NA	3' UTR (NM_001037165, exon 9 of 9)	3' UTR (NM_001037165, exon 9 of 9)	-7523	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
205093	chr7	6725051	6725350	+	0	NA	Intergenic	Intergenic	-10105	NR_002217	441194		NR_002217	ENSG00000187953	PMS2CL	PMS2P13	PMS2 C-terminal like (pseudogene)	pseudo
141508	chr2	241200771	241201330	+	0	NA	intron (NM_001370694, intron 6 of 24)	intron (NM_001370694, intron 6 of 24)	12373	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
212665	chr7	129566421	129566680	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-45170	NM_001293163	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
193211	chr6	29797371	29797930	+	0	NA	non-coding (NR_132323, exon 3 of 3)	non-coding (NR_132323, exon 3 of 3)	-4577	NR_002139	54435		NM_018985		HCG4	HCG4P10|HCGIV-10|HCGIV.9	HLA complex group 4	ncRNA
151927	chr22	19034101	19034600	+	0	NA	Intergenic	Intergenic	11726	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
90828	chr17	2299671	2299830	+	0	NA	exon (NM_017575, exon 2 of 19)	exon (NM_017575, exon 2 of 19)	4035	NM_017575	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
1830	chr1	6248801	6250480	+	0	NA	exon (NM_207370, exon 6 of 6)	exon (NM_207370, exon 6 of 6)	5461	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
97185	chr17	42679011	42679400	+	0	NA	3' UTR (NM_016602, exon 2 of 2)	3' UTR (NM_016602, exon 2 of 2)	-2211	NR_073573	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
138265	chr2	203453521	203454100	+	0	NA	intron (NM_001329728, intron 12 of 15)	intron (NM_001329728, intron 12 of 15)	81491	NM_203365	65059		NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
145513	chr20	44019251	44020630	+	0	NA	intron (NM_032883, intron 4 of 9)	intron (NM_032883, intron 4 of 9)	74044	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
181406	chr5	40694071	40694980	+	0	NA	TTS (NM_000958)	TTS (NM_000958)	14610	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
23167	chr1	226745351	226745450	+	0	NA	Intergenic	AluY|SINE|Alu	-6225	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
163007	chr3	49785001	49785200	+	0	NA	intron (NM_153273, intron 1 of 5)	intron (NM_153273, intron 1 of 5)	1094	NM_001242829	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
54509	chr12	92101671	92102030	+	0	NA	intron (NR_132341, intron 1 of 4)	FRAM|SINE|Alu	39863	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
230883	chr9	129204301	129205080	+	0	NA	Intergenic	Intergenic	-26429	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
23369	chr1	228163351	228164100	+	0	NA	TTS (NR_103539)	TTS (NR_103539)	1123	NR_103539	574432		NR_103539	ENSG00000203684	IBA57-DT	C1orf148|IBA57-AS1	IBA57 divergent transcript	ncRNA
129846	chr2	72913921	72914580	+	0	NA	Intergenic	Intergenic	-3269	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
170254	chr3	184248351	184249100	+	0	NA	promoter-TSS (NM_032331)	promoter-TSS (NM_032331)	237	NM_005787	10195		NM_005787	ENSG00000214160	ALG3	CDG1D|CDGS4|CDGS6|D16Ertd36e|NOT56L|Not56|not	ALG3 alpha-1,3- mannosyltransferase	protein-coding
6764	chr1	30742251	30742780	+	0	NA	exon (NM_006762, exon 2 of 8)	exon (NM_006762, exon 2 of 8)	-3283	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
52947	chr12	57454171	57454580	+	0	NA	promoter-TSS (NM_031479)	promoter-TSS (NM_031479)	-932	NM_031479	83729		NM_031479	ENSG00000139269	INHBE	-	inhibin subunit beta E	protein-coding
103900	chr17	79805451	79806100	+	0	NA	Intergenic	Intergenic	-8698	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
136008	chr2	172429521	172430150	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	2249	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
234314	chrX	13732401	13732800	+	0	NA	intron (NM_014563, intron 1 of 4)	MER117|DNA|hAT-Charlie	2020	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
116929	chr19	18836901	18837300	+	0	NA	intron (NM_001297549, intron 1 of 23)	AluJb|SINE|Alu	5141	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
156636	chr22	41617821	41618130	+	0	NA	intron (NM_015704, intron 1 of 5)	L2a|LINE|L2	3068	NM_015704	27351		NM_015704	ENSG00000100418	DESI1	D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|POST|PPPDE2	desumoylating isopeptidase 1	protein-coding
36264	chr11	3787851	3788480	+	0	NA	intron (NR_157590, intron 1 of 31)	intron (NR_157590, intron 1 of 31)	9381	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
147924	chr20	62914851	62915880	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	11140	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
180238	chr5	1599171	1599330	+	0	NA	non-coding (NR_003713, exon 4 of 4)	non-coding (NR_003713, exon 4 of 4)	-4719	NR_003263	728609		NR_003263	ENSG00000291055	SDHAP3	SDHACL|SDHAL	SDHA pseudogene 3	pseudo
100814	chr17	64066421	64067530	+	0	NA	intron (NM_001433, intron 7 of 21)	intron (NM_001433, intron 7 of 21)	-46341	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
118360	chr19	35673171	35674350	+	0	NA	promoter-TSS (NR_046420)	promoter-TSS (NR_046420)	-469	NR_046420	100862728		NR_046420	ENSG00000226510	UPK1A-AS1	-	UPK1A antisense RNA 1	ncRNA
238631	chrX	153963271	153963430	+	0	NA	exon (NM_005334, exon 4 of 26)	exon (NM_005334, exon 4 of 26)	-5415	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
150068	chr21	37395771	37396250	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	-22895	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
163834	chr3	52461071	52461450	+	0	NA	intron (NM_001276294, intron 3 of 13)	AluSz6|SINE|Alu	5656	NM_001276294	11188		NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
144118	chr20	33992621	33994690	+	0	NA	promoter-TSS (NM_007367)	promoter-TSS (NM_007367)	-256	NM_007367	22913		NM_007367	ENSG00000125970	RALY	HNRPCL2|P542	RALY heterogeneous nuclear ribonucleoprotein	protein-coding
103650	chr17	78766151	78766250	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	16008	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
104383	chr17	81030401	81030600	+	0	NA	non-coding (NR_026857, exon 2 of 2)	non-coding (NR_026857, exon 2 of 2)	4219	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
239095	chrY	10666871	10667030	+	0	NA	Intergenic	Intergenic	756152	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
112231	chr19	5711851	5712500	+	0	NA	intron (NR_076392, intron 4 of 18)	intron (NR_076392, intron 4 of 18)	7971	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
66126	chr14	60157871	60158430	+	0	NA	intron (NM_001322280, intron 1 of 6)	AluSz6|SINE|Alu	7248	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
203156	chr6	167041351	167041850	+	0	NA	3' UTR (NM_007045, exon 13 of 13)	3' UTR (NM_007045, exon 13 of 13)	42203	NM_194429	11116		NM_007045	ENSG00000213066	CEP43	FGFR1OP|FOP	centrosomal protein 43	protein-coding
891	chr1	1657921	1658180	+	0	NA	intron (NM_033490, intron 1 of 18)	AluSq4|SINE|Alu	954	NM_033487	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
130515	chr2	85605971	85606330	+	0	NA	3' UTR (NM_001013649, exon 4 of 4)	3' UTR (NM_001013649, exon 4 of 4)	3289	NR_046347	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
8191	chr1	39570621	39571300	+	0	NA	intron (NR_125979, intron 2 of 3)	intron (NR_125979, intron 2 of 3)	-3450	NR_002983	677834		NR_002983	ENSG00000201457	SNORA55	ACA55	small nucleolar RNA, H/ACA box 55	snoRNA
212307	chr7	126183751	126183850	+	0	NA	Intergenic	AluYa5|SINE|Alu	874384	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
81497	chr16	8951271	8951430	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	-1696	NR_135826	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
216022	chr8	9135171	9136750	+	0	NA	TTS (NM_024607).2	TTS (NM_024607).2	14698	NM_024607	79660		NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
45075	chr11	117068401	117069000	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJo|SINE|Alu	29728	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
181094	chr5	36901421	36901680	+	0	NA	intron (NM_133433, intron 1 of 46)	AluSp|SINE|Alu	24781	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
61381	chr13	51448801	51449780	+	0	NA	3' UTR (NM_001039938, exon 3 of 3)	3' UTR (NM_001039938, exon 3 of 3)	3746	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
65389	chr14	50777701	50778450	+	0	NA	intron (NM_020921, intron 6 of 30)	intron (NM_020921, intron 6 of 30)	-43722	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
99425	chr17	50111021	50111680	+	0	NA	TTS (NM_001199899)	TTS (NM_001199899)	15655	NM_001199899	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
91751	chr17	6757551	6757850	+	0	NA	intron (NM_001353139, intron 1 of 5)	L1ME1|LINE|L1	1654	NM_199139	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
95759	chr17	38654421	38654900	+	0	NA	Intergenic	Intergenic	20297	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
219568	chr8	78804451	78804850	+	0	NA	intron (NM_000880, intron 1 of 5)	CpG	813	NM_000880	3574		NM_000880	ENSG00000104432	IL7	IL-7	interleukin 7	protein-coding
99373	chr17	49931571	49932130	+	0	NA	Intergenic	Intergenic	-37340	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
62816	chr13	109759801	109760000	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	26683	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
53239	chr12	62466221	62467800	+	0	NA	5' UTR (NM_001278471, exon 1 of 34)	5' UTR (NM_001278471, exon 1 of 34)	184	NM_015026	23041		NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
47510	chr12	4114821	4115750	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-158477	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
220473	chr8	100442521	100443510	+	0	NA	Intergenic	MIRb|SINE|MIR	60252	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
74347	chr15	58611901	58612100	+	0	NA	intron (NM_001320570, intron 10 of 14)	intron (NM_001320570, intron 10 of 14)	81607	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
149814	chr21	34999601	34999800	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	39726	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
16936	chr1	155908701	155909300	+	0	NA	intron (NM_001256821, intron 3 of 5)	intron (NM_001256821, intron 3 of 5)	1918	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
179451	chr4	184419951	184421300	+	0	NA	intron (NM_002199, intron 2 of 8)	intron (NM_002199, intron 2 of 8)	-38319	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
154433	chr22	35348821	35349100	+	0	NA	TTS (NM_005488)	TTS (NM_005488)	-12161	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
127458	chr2	42202851	42203150	+	0	NA	intron (NM_019063, intron 1 of 22)	AluJr|SINE|Alu	-32769	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
155035	chr22	37481201	37481680	+	0	NA	intron (NM_002405, intron 1 of 7)	MIR|SINE|MIR	4944	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
185265	chr5	123670921	123671230	+	0	NA	Intergenic	Intergenic	125658	NM_001044723	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
101731	chr17	69325401	69325780	+	0	NA	intron (NM_172232, intron 1 of 38)	intron (NM_172232, intron 1 of 38)	1543	NM_172232	23461		NM_018672	ENSG00000154265	ABCA5	ABC13|EST90625|HTC3	ATP binding cassette subfamily A member 5	protein-coding
53988	chr12	75257501	75257800	+	0	NA	Intergenic	Intergenic	22910	NR_149000	100130268		NR_149000	ENSG00000254451	LOC100130268	-	uncharacterized LOC100130268	ncRNA
208135	chr7	63789621	63789900	+	0	NA	Intergenic	CpG	168670	NR_036270	100422848		NR_036270	ENSG00000265214	MIR4283-2	-	microRNA 4283-2	ncRNA
88540	chr16	85444971	85445930	+	0	NA	Intergenic	Intergenic	-139125	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
202517	chr6	158566301	158566830	+	0	NA	intron (NR_164859, intron 1 of 16)	intron (NR_164859, intron 1 of 16)	6474	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
132519	chr2	106108421	106108730	+	0	NA	intron (NR_165308, intron 10 of 14)	intron (NR_165308, intron 10 of 14)	30306	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
162986	chr3	49714321	49714580	+	0	NA	intron (NR_135218, intron 31 of 38)	intron (NR_135218, intron 31 of 38)	5234	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
58013	chr12	124388051	124388150	+	0	NA	intron (NM_001077261, intron 18 of 47)	intron (NM_001077261, intron 18 of 47)	-50858	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
134284	chr2	135837621	135837880	+	0	NA	promoter-TSS (NM_002299)	promoter-TSS (NM_002299)	-566	NM_002299	3938		NM_002299	ENSG00000115850	LCT	LAC|LPH|LPH1	lactase	protein-coding
9979	chr1	54965771	54966130	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-14678	NM_182532	199964		NM_182532	ENSG00000143001	TMEM61	-	transmembrane protein 61	protein-coding
77499	chr15	84635621	84636500	+	0	NA	intron (NR_004859, intron 2 of 4)	intron (NR_004859, intron 2 of 4)	4600	NR_003654	54581		NM_022050		SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
89004	chr16	87966621	87967080	+	0	NA	intron (NM_001173542, intron 1 of 12)	MLT1J|LTR|ERVL-MaLR	-3168	NM_001173543	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
9347	chr1	46679451	46679550	+	0	NA	intron (NM_014774, intron 10 of 10)	AluSx1|SINE|Alu	5464	NR_038827	100130197		NR_038827	ENSG00000228237	EFCAB14-AS1	KIAA0494-AS1	EFCAB14 antisense RNA 1	ncRNA
225220	chr9	34180851	34181550	+	0	NA	intron (NM_001171201, intron 1 of 5)	AluY|SINE|Alu	2157	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
90730	chr17	2019251	2019550	+	0	NA	non-coding (NR_135642, exon 2 of 2)	non-coding (NR_135642, exon 2 of 2)	1684	NR_135642	105371485		NR_135642	ENSG00000228133	LOC105371485	-	uncharacterized LOC105371485	ncRNA
201052	chr6	142316921	142317180	+	0	NA	intron (NM_001032394, intron 2 of 24)	intron (NM_001032394, intron 2 of 24)	15043	NM_198569	57211		NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
64152	chr14	22899371	22899530	+	0	NA	3' UTR (NM_001077352, exon 12 of 12)	3' UTR (NM_001077352, exon 12 of 12)	16228	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
211260	chr7	102680921	102681650	+	0	NA	non-coding (NR_146066, exon 12 of 12)	non-coding (NR_146066, exon 12 of 12)	-9550	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
188397	chr5	153358271	153358730	+	0	NA	Intergenic	Intergenic	-132024	NM_001114183	2890		NM_000827	ENSG00000155511	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1|MRD67|MRT76	glutamate ionotropic receptor AMPA type subunit 1	protein-coding
219596	chr8	80015671	80016330	+	0	NA	intron (NM_014018, intron 1 of 2)	L1MCa|LINE|L1	14259	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
54421	chr12	90978251	90978350	+	0	NA	intron (NM_004950, intron 2 of 6)	intron (NM_004950, intron 2 of 6)	-23124	NR_130711	196477		NM_152638	ENSG00000197651	CCER1	C12orf12	coiled-coil glutamate rich protein 1	protein-coding
84061	chr16	29587821	29588900	+	0	NA	intron (NR_135305, intron 1 of 13)	AluY|SINE|Alu	6732	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
226641	chr9	74424751	74424930	+	0	NA	Intergenic	L1PA2|LINE|L1	53309	NR_121182	101927358		NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
96193	chr17	39750751	39751050	+	0	NA	Intergenic	Intergenic	10933	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
48055	chr12	7042951	7043250	+	0	NA	Intergenic	L1MC3|LINE|L1	-17618	NM_001734	716		NM_001734	ENSG00000182326	C1S	EDSPD2	complement C1s	protein-coding
204213	chr7	2518771	2520450	+	0	NA	promoter-TSS (NM_001040167)	promoter-TSS (NM_001040167)	-164	NM_001040168	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
190911	chr6	2839351	2840050	+	0	NA	intron (NR_073111, intron 2 of 7)	intron (NR_073111, intron 2 of 7)	2163	NR_073112	1992		NM_030666	ENSG00000021355	SERPINB1	EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2	serpin family B member 1	protein-coding
22916	chr1	225905401	225906330	+	0	NA	Intergenic	Intergenic	16277	NR_106799	102466270		NR_106799	ENSG00000284519	MIR6741	hsa-mir-6741	microRNA 6741	ncRNA
108707	chr18	77069871	77070450	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	-53105	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
238709	chrX	154094501	154094700	+	0	NA	intron (NM_004992, intron 1 of 3)	intron (NM_004992, intron 1 of 3)	2369	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
142097	chr20	2533121	2533200	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-3413	NM_080751	117532		NM_080751	ENSG00000149488	TMC2	C20orf145	transmembrane channel like 2	protein-coding
204982	chr7	6396871	6397030	+	0	NA	intron (NM_006908, intron 3 of 5)	AluY|SINE|Alu	22423	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
40784	chr11	64884801	64885100	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-5237	NM_001282445	10938		NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH domain containing 1	protein-coding
214805	chr7	151196171	151196330	+	0	NA	intron (NM_001304419, intron 10 of 18)	intron (NM_001304419, intron 10 of 18)	-8458	NM_080871	136371		NM_080871	ENSG00000146926	ASB10	GLC1F	ankyrin repeat and SOCS box containing 10	protein-coding
216944	chr8	22972551	22973050	+	0	NA	Intergenic	Intergenic	-14451	NM_001160036	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
167778	chr3	133414621	133415280	+	0	NA	intron (NM_003571, intron 1 of 6)	intron (NM_003571, intron 1 of 6)	14894	NM_003571	8419		NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding
175326	chr4	68343801	68344380	+	0	NA	intron (NM_001031732, intron 1 of 16)	intron (NM_001031732, intron 1 of 16)	6000	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
98779	chr17	48135071	48135700	+	0	NA	intron (NM_001075099, intron 12 of 12)	intron (NM_001075099, intron 12 of 12)	21126	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
135891	chr2	171157371	171158000	+	0	NA	intron (NM_001136554, intron 1 of 20)	intron (NM_001136554, intron 1 of 20)	3208	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
28320	chr10	46294201	46294400	+	0	NA	intron (NM_001278688, intron 3 of 16)	intron (NM_001278688, intron 3 of 16)	7303	NM_001278688	195977		NM_001278688	ENSG00000274209	ANTXRL	-	ANTXR like	protein-coding
168443	chr3	142844401	142844600	+	0	NA	intron (NM_013363, intron 3 of 8)	L1ME2z|LINE|L1	44583	NM_013363	26577		NM_013363	ENSG00000163710	PCOLCE2	PCPE2	procollagen C-endopeptidase enhancer 2	protein-coding
101959	chr17	74646301	74646550	+	0	NA	Intergenic	L2b|LINE|L2	-22687	NM_181449	342510		NM_181449	ENSG00000186407	CD300E	CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2	CD300e molecule	protein-coding
231957	chr9	133145521	133145980	+	0	NA	intron (NM_001042368, intron 1 of 17)	MIRb|SINE|MIR	3460	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
214661	chr7	150903571	150903730	+	0	NA	Intergenic	Intergenic	51133	NM_001091	26		NM_001091	ENSG00000002726	AOC1	ABP|ABP1|DAO|DAO1|KAO|KDAO	amine oxidase copper containing 1	protein-coding
116194	chr19	17473051	17473830	+	0	NA	intron (NM_198580, intron 1 of 11)	intron (NM_198580, intron 1 of 11)	2916	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
134330	chr2	136108201	136108480	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	7895	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
156114	chr22	40093201	40093750	+	0	NA	intron (NM_001024843, intron 1 of 23)	L1MEd|LINE|L1	48658	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
217103	chr8	24912721	24913000	+	0	NA	promoter-TSS (NM_005382)	promoter-TSS (NM_005382)	-901	NM_005382	4741		NM_005382	ENSG00000104722	NEFM	NEF3|NF-M|NFM	neurofilament medium chain	protein-coding
169675	chr3	171813951	171814400	+	0	NA	Intergenic	Intergenic	-3692	NM_002662	5337		NM_002662	ENSG00000075651	PLD1	CVDD|CVDP1	phospholipase D1	protein-coding
147042	chr20	53642371	53643900	+	0	NA	Intergenic	Intergenic	34781	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
80961	chr16	3874651	3874750	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	5420	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
55868	chr12	109447151	109447450	+	0	NA	3' UTR (NM_001101421, exon 31 of 31)	3' UTR (NM_001101421, exon 31 of 31)	30000	NR_133897	83892		NM_031954	ENSG00000110906	KCTD10	BTBD28|MSTP028|ULRO61|hBACURD3	potassium channel tetramerization domain containing 10	protein-coding
197612	chr6	82246771	82248710	+	0	NA	promoter-TSS (NM_001300906)	promoter-TSS (NM_001300906)	4	NM_001300906	25998		NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI	inhibitor of Bruton tyrosine kinase	protein-coding
202760	chr6	159044101	159044330	+	0	NA	intron (NM_054114, intron 1 of 9)	intron (NM_054114, intron 1 of 9)	776	NM_138810	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
56975	chr12	120543771	120544130	+	0	NA	intron (NM_001330474, intron 1 of 16)	AluSz|SINE|Alu	9594	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
110016	chr19	1439801	1441530	+	0	NA	TTS (NM_001018)	TTS (NM_001018)	2269	NM_001308226	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
202491	chr6	158296951	158297250	+	0	NA	Intergenic	MER11A|LTR|ERVK	-15365	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
228492	chr9	100083421	100083700	+	0	NA	intron (NM_015051, intron 1 of 11)	intron (NM_015051, intron 1 of 11)	15440	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
16307	chr1	154177301	154177630	+	0	NA	intron (NM_001364680, intron 2 of 8)	intron (NM_001364680, intron 2 of 8)	739	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
150096	chr21	37431351	37431650	+	0	NA	intron (NM_101395, intron 3 of 12)	Helitron3Na_Mam|RC|Helitron	11201	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
231607	chr9	131562371	131562930	+	0	NA	Intergenic	AluJr4|SINE|Alu	17127	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
101609	chr17	68184051	68184150	+	0	NA	Intergenic	Intergenic	-14560	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
78028	chr15	89971471	89971830	+	0	NA	Intergenic	Intergenic	-29674	NM_198526	374655		NM_198526	ENSG00000140548	ZNF710	-	zinc finger protein 710	protein-coding
234087	chrX	9279271	9279450	+	0	NA	Intergenic	Intergenic	-183935	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
224964	chr9	33054571	33055130	+	0	NA	intron (NM_018225, intron 9 of 11)	intron (NM_018225, intron 9 of 11)	21824	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
104089	chr17	80259221	80259700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1392	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
35136	chr11	711951	712450	+	0	NA	intron (NM_022772, intron 4 of 20)	AluSx1|SINE|Alu	-5117	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
43157	chr11	75340451	75341180	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	-5629	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
147199	chr20	57348801	57349680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2015	NM_003610	8480		NM_003610	ENSG00000101146	RAE1	Gle2|MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1	ribonucleic acid export 1	protein-coding
55161	chr12	100141551	100143530	+	0	NA	intron (NM_015054, intron 1 of 20)	CpG	334	NM_015054	23074		NM_015054	ENSG00000111647	BLTP3B	SHIP164|SHIP164A|UHRF1BP1L	bridge-like lipid transfer protein family member 3B	protein-coding
51169	chr12	50214271	50214580	+	0	NA	intron (NM_001113547, intron 1 of 7)	intron (NM_001113547, intron 1 of 7)	8233	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
200830	chr6	138001851	138002250	+	0	NA	Intergenic	Intergenic	-56250	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
71332	chr14	105417701	105417980	+	0	NA	non-coding (NR_125384, exon 3 of 3)	non-coding (NR_125384, exon 3 of 3)	1899	NR_125384	100507437		NR_125384	ENSG00000251602	MTA1-DT	-	MTA1 divergent transcript	ncRNA
92912	chr17	16493871	16494030	+	0	NA	Intergenic	LTR62|LTR|ERVL	-1757	NM_207387	388341		NM_207387	ENSG00000181350	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
177030	chr4	107067971	107068330	+	0	NA	Intergenic	Intergenic	-31837	NM_014421	27123		NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
60813	chr13	45345501	45345700	+	0	NA	intron (NR_024458, intron 3 of 10)	intron (NR_024458, intron 3 of 10)	4255	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
197186	chr6	63576951	63577130	+	0	NA	intron (NR_169593, intron 2 of 5)	intron (NR_169593, intron 2 of 5)	4560	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
168365	chr3	141896851	141897480	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	20522	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
9621	chr1	52411851	52412150	+	0	NA	intron (NM_032864, intron 4 of 9)	intron (NM_032864, intron 4 of 9)	7398	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
122613	chr19	49803601	49803800	+	0	NA	intron (NM_014203, intron 19 of 23)	MIRc|SINE|MIR	9592	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
165122	chr3	71709901	71710350	+	0	NA	intron (NM_173359, intron 3 of 7)	intron (NM_173359, intron 3 of 7)	15277	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
22064	chr1	211331151	211331480	+	0	NA	intron (NM_001319207, intron 1 of 10)	MIRb|SINE|MIR	4482	NM_001033910	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
121490	chr19	47132621	47132930	+	0	NA	intron (NR_027280, intron 1 of 8)	AluJb|SINE|Alu	1940	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
19691	chr1	181035671	181036500	+	0	NA	intron (NM_001385164, intron 1 of 4)	LTR33|LTR|ERVL	2102	NM_001385162	3140		NM_001531	ENSG00000153029	MR1	HLALS	major histocompatibility complex, class I-related	protein-coding
196818	chr6	46135371	46135530	+	0	NA	intron (NM_014936, intron 1 of 3)	L1MB8|LINE|L1	5461	NM_014936	22875		NM_014936	ENSG00000001561	ENPP4	NPP4	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding
115721	chr19	16238701	16239300	+	0	NA	3' UTR (NM_032493, exon 12 of 12)	3' UTR (NM_032493, exon 12 of 12)	41089	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
18438	chr1	161490871	161491830	+	0	NA	Intergenic	MER41C|LTR|ERV1	-14107	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
121761	chr19	47758021	47759030	+	0	NA	intron (NR_132382, intron 2 of 2)	L1ME4b|LINE|L1	2672	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
95717	chr17	38566051	38566630	+	0	NA	intron (NM_025248, intron 3 of 18)	intron (NM_025248, intron 3 of 18)	39612	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
217256	chr8	27310901	27312550	+	0	NA	promoter-TSS (NM_001304495)	promoter-TSS (NM_001304495)	247	NM_173174	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
142746	chr20	10434901	10436700	+	0	NA	intron (NM_001009608, intron 1 of 7)	intron (NM_001009608, intron 1 of 7)	495	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
171801	chr4	532901	533330	+	0	NA	intron (NR_144326, intron 11 of 13)	intron (NR_144326, intron 11 of 13)	33905	NM_001345989	54872		NM_017733	ENSG00000174227	PIGG	EMM|GPI7|LAS21|MRT53|NEDHSCA|PRO4405|RLGS1930	phosphatidylinositol glycan anchor biosynthesis class G (EMM blood group)	protein-coding
163882	chr3	52511321	52511780	+	0	NA	intron (NM_015136, intron 25 of 68)	intron (NM_015136, intron 25 of 68)	16212	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
1356	chr1	2498051	2498630	+	0	NA	intron (NM_001303013, intron 16 of 21)	intron (NM_001303013, intron 16 of 21)	22025	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
188120	chr5	150387501	150387700	+	0	NA	intron (NM_001371623, intron 17 of 26)	intron (NM_001371623, intron 17 of 26)	25156	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
61480	chr13	52447371	52448550	+	0	NA	intron (NM_001282168, intron 1 of 13)	MIRb|SINE|MIR	2284	NM_001282169	51028		NM_016075	ENSG00000136100	VPS36	C13orf9|CGI-145|EAP45	vacuolar protein sorting 36 homolog	protein-coding
135773	chr2	169690701	169691200	+	0	NA	intron (NM_001085447, intron 1 of 8)	L1MB7|LINE|L1	3455	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
143108	chr20	23361521	23363400	+	0	NA	intron (NM_022482, intron 1 of 5)	CpG	278	NM_001317012	64412		NM_022482	ENSG00000125812	GZF1	JLSM|ZBTB23|ZNF336	GDNF inducible zinc finger protein 1	protein-coding
171665	chr3	197679851	197680150	+	0	NA	intron (NM_014687, intron 16 of 19)	intron (NM_014687, intron 16 of 19)	-5424	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
178468	chr4	148375751	148376500	+	0	NA	intron (NR_148974, intron 2 of 6)	intron (NR_148974, intron 2 of 6)	66289	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
89246	chr16	88646821	88647150	+	0	NA	intron (NM_000101, intron 3 of 5)	intron (NM_000101, intron 3 of 5)	4068	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
39521	chr11	61080501	61081380	+	0	NA	Intergenic	AluY|SINE|Alu	-13023	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
27827	chr10	38093271	38093430	+	0	NA	promoter-TSS (NM_001324250)	promoter-TSS (NM_001324250)	-986	NM_001324252	7587		NM_003421	ENSG00000075407	ZNF37A	KOX21|ZNF37	zinc finger protein 37A	protein-coding
180825	chr5	32505021	32505500	+	0	NA	Intergenic	Intergenic	-60520	NR_144318	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
70452	chr14	102053051	102053150	+	0	NA	3' UTR (NM_001376, exon 78 of 78)	3' UTR (NM_001376, exon 78 of 78)	33944	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
111963	chr19	4830371	4830850	+	0	NA	intron (NM_001385680, intron 1 of 2)	L2a|LINE|L2	1102	NM_001385680	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
122714	chr19	49969421	49969680	+	0	NA	promoter-TSS (NM_001348364)	promoter-TSS (NM_001348364)	-114	NR_145574	400709		NM_001348364	ENSG00000161643	SIGLEC16	SIGLECP16|Siglec-P16	sialic acid binding Ig like lectin 16	protein-coding
23809	chr1	234386071	234386530	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	12599	NM_001301733	388753		NM_001012985	ENSG00000168275	COA6	C1orf31|CEMCOX4|MC4DN13	cytochrome c oxidase assembly factor 6	protein-coding
125923	chr2	25044701	25045680	+	0	NA	intron (NM_001319099, intron 1 of 22)	intron (NM_001319099, intron 1 of 22)	2727	NM_001319099	22979		NM_014971	ENSG00000084710	EFR3B	KIAA0953	EFR3 homolog B	protein-coding
104910	chr17	81905501	81905700	+	0	NA	intron (NM_001256434, intron 11 of 13)	intron (NM_001256434, intron 11 of 13)	3362	NM_148896	256933		NM_148896	ENSG00000183979	NPB	L7|PPL7|PPNPB	neuropeptide B	protein-coding
218551	chr8	54025371	54025530	+	0	NA	Intergenic	L1MB5|LINE|L1	-3002	NR_109902	6917		NM_006756	ENSG00000187735	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A1	protein-coding
67715	chr14	73460321	73460780	+	0	NA	TTS (NR_135251)	TTS (NR_135251)	-1970	NM_001005745	8650		NM_003744	ENSG00000133961	NUMB	C14orf41|S171|c14_5527	NUMB endocytic adaptor protein	protein-coding
108050	chr18	59308351	59308850	+	0	NA	intron (NM_181654, intron 2 of 2)	intron (NM_181654, intron 2 of 2)	10049	NM_181654	339302		NM_181654	ENSG00000166569	CPLX4	CPX-IV|CPXIV	complexin 4	protein-coding
135674	chr2	168577701	168578100	+	0	NA	intron (NM_203463, intron 3 of 9)	intron (NM_203463, intron 3 of 9)	-5043	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
233304	chr9	137386501	137387100	+	0	NA	intron (NM_017820, intron 2 of 21)	intron (NM_017820, intron 2 of 21)	36362	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
228504	chr9	100209621	100210400	+	0	NA	intron (NR_134606, intron 3 of 16)	L2c|LINE|L2	110767	NM_014425	27130		NM_014425	ENSG00000119509	INVS	INV|NPH2|NPHP2	inversin	protein-coding
204078	chr7	2079801	2080200	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	9052	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
150747	chr21	43768171	43768850	+	0	NA	Intergenic	Intergenic	7798	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
118262	chr19	35259771	35260330	+	0	NA	intron (NM_205835, intron 3 of 7)	intron (NM_205835, intron 3 of 7)	-8912	NM_001321150	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
67674	chr14	73133921	73134430	+	0	NA	Intergenic	AluSz|SINE|Alu	-2332	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
148823	chr21	8382151	8382530	+	0	NA	intron (NR_038958, intron 1 of 6).2	intron (NR_038958, intron 1 of 6).2	1675	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
70234	chr14	100872251	100872550	+	0	NA	Intergenic	Intergenic	-2093	NR_029889	442905		NR_029889	ENSG00000199151	MIR337	MIRN337|hsa-mir-337|mir-337	microRNA 337	ncRNA
35602	chr11	1755571	1755730	+	0	NA	intron (NM_001909, intron 5 of 8)	intron (NM_001909, intron 5 of 8)	-5055	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
190209	chr5	178223251	178224080	+	0	NA	intron (NR_103508, intron 3 of 9)	intron (NR_103508, intron 3 of 9)	9137	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
233031	chr9	137034151	137036200	+	0	NA	3' UTR (NM_207511, exon 3 of 3)	3' UTR (NM_207511, exon 3 of 3)	-3087	NM_004479	2529		NM_004479	ENSG00000180549	FUT7	FucT-VII	fucosyltransferase 7	protein-coding
232662	chr9	136490021	136490380	+	0	NA	Intergenic	AluY|SINE|Alu	-6441	NM_001276418	9919		NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding
113583	chr19	10274151	10274750	+	0	NA	intron (NM_000201, intron 1 of 6)	AluSz6|SINE|Alu	3330	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
180547	chr5	14660821	14661480	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	3454	NR_168439	728178		NR_168439	ENSG00000261360	OTULIN-DT	-	OTULIN divergent transcript	ncRNA
178496	chr4	150572871	150573230	+	0	NA	intron (NM_001367550, intron 40 of 56)	intron (NM_001367550, intron 40 of 56)	-6039	NR_149035	729558		NR_149035	ENSG00000249690	LOC729558	-	uncharacterized LOC729558	ncRNA
182829	chr5	69215701	69216100	+	0	NA	Intergenic	AluY|SINE|Alu	-1860	NM_033281	92259		NM_033281	ENSG00000134056	KGD4	DC47|MRP-S36|MRPS36	alpha-ketoglutarate dehydrogenase subunit 4	protein-coding
55308	chr12	103840731	103842550	+	0	NA	promoter-TSS (NM_001031701)	promoter-TSS (NM_001031701)	-406	NM_001031701	51559		NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
222730	chr8	141391421	141393280	+	0	NA	intron (NM_032611, intron 1 of 5).2	CpG	329	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
134232	chr2	134925951	134926050	+	0	NA	intron (NR_135468, intron 2 of 9)	AluJb|SINE|Alu	7178	NM_001320749	905		NM_001241	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
43119	chr11	75240501	75242830	+	0	NA	exon (NM_001195528, exon 1 of 1)	exon (NM_001195528, exon 1 of 1)	891	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
33187	chr10	113210951	113211150	+	0	NA	Intergenic	(CCTCT)n|Simple_repeat|Simple_repeat	81779	NM_001349870	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
147579	chr20	61252071	61252430	+	0	NA	promoter-TSS (NM_001794).2	promoter-TSS (NM_001794).2	-11	NM_001794	1002		NM_001794	ENSG00000179242	CDH4	CAD4|R-CAD|RCAD	cadherin 4	protein-coding
133752	chr2	127525451	127527580	+	0	NA	promoter-TSS (NM_017969)	promoter-TSS (NM_017969)	-26	NM_017969	55677		NM_017969	ENSG00000163166	IWS1	-	interacts with SUPT6H, CTD assembly factor 1	protein-coding
237859	chrX	130171701	130172530	+	0	NA	exon (NM_004794, exon 1 of 2)	exon (NM_004794, exon 1 of 2)	153	NM_004794	9363		NM_004794	ENSG00000134594	RAB33A	RabS10	RAB33A, member RAS oncogene family	protein-coding
80872	chr16	3580371	3581200	+	0	NA	TTS (NM_032444)	TTS (NM_032444)	-3382	NR_075083	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
72920	chr15	40372471	40372630	+	0	NA	3' UTR (NM_033510, exon 8 of 8)	3' UTR (NM_033510, exon 8 of 8)	-10171	NM_033286	90417		NM_033286	ENSG00000128944	KNSTRN	C15orf23|HSD11|ROCHIS|SKAP|TRAF4AF1	kinetochore localized astrin (SPAG5) binding protein	protein-coding
107857	chr18	54813001	54813350	+	0	NA	intron (NM_001375327, intron 2 of 6)	intron (NM_001375327, intron 2 of 6)	-15302	NM_004163	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
155656	chr22	39012521	39012980	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-1507	NM_014508	27350		NM_014508	ENSG00000244509	APOBEC3C	A3C|APOBEC1L|ARDC2|ARDC4|ARP5|PBI|bK150C2.3	apolipoprotein B mRNA editing enzyme catalytic subunit 3C	protein-coding
220860	chr8	103403721	103403980	+	0	NA	intron (NR_102337, intron 2 of 5)	intron (NR_102337, intron 2 of 5)	11257	NM_030780	81034		NM_030780	ENSG00000164933	SLC25A32	GLYB|MFT|MFTC|RREI	solute carrier family 25 member 32	protein-coding
24013	chr1	235258951	235259730	+	0	NA	intron (NM_016374, intron 3 of 23)	MER91A|DNA|hAT-Tip100	-67876	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
67927	chr14	74683521	74683780	+	0	NA	intron (NM_001039479, intron 4 of 19)	intron (NM_001039479, intron 4 of 19)	29430	NM_001039479	9870		NM_014821	ENSG00000119682	AREL1	FIEL1|KIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding
116574	chr19	18243221	18243480	+	0	NA	intron (NM_000923, intron 1 of 15)	AluSq2|SINE|Alu	4850	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
39670	chr11	61688421	61688880	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	8259	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
185427	chr5	131158121	131158580	+	0	NA	TTS (NR_073488)	TTS (NR_073488)	6906	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
28421	chr10	48139921	48140650	+	0	NA	Intergenic	CpG	34858	NM_001042512	143162		NM_152428	ENSG00000170324	FRMPD2	PDZD5C|PDZK4|PDZK5C	FERM and PDZ domain containing 2	protein-coding
16867	chr1	155751901	155752500	+	0	NA	exon (NM_001282858, exon 30 of 32)	exon (NM_001282858, exon 30 of 32)	6432	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
5262	chr1	25033751	25034450	+	0	NA	Intergenic	Intergenic	10597	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
63909	chr14	21921371	21921530	+	0	NA	Intergenic	MER110-int|LTR|ERV1	-250433	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
192205	chr6	17728871	17729060	+	0	NA	Intergenic	LTR12C|LTR|ERV1	21922	NR_134618	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
204934	chr7	6255801	6256000	+	0	NA	intron (NM_004227, intron 1 of 12)	AluY|SINE|Alu	16724	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
177217	chr4	108483971	108484330	+	0	NA	Intergenic	Intergenic	-73083	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
155906	chr22	39556101	39556400	+	0	NA	Intergenic	MIRb|SINE|MIR	-14503	NM_021096	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
38085	chr11	35201901	35202300	+	0	NA	intron (NM_001001389, intron 8 of 16)	intron (NM_001001389, intron 8 of 16)	39150	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
199433	chr6	117352501	117352800	+	0	NA	intron (NM_001378902, intron 27 of 43)	Penelope1_Vert|LINE|Penelope	73292	NM_001378902	6098		NM_002944	ENSG00000047936	ROS1	MCF3|ROS|c-ros-1	ROS proto-oncogene 1, receptor tyrosine kinase	protein-coding
57650	chr12	122524921	122525180	+	0	NA	intron (NR_036436, intron 1 of 9)	intron (NR_036436, intron 1 of 9)	1886	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
213815	chr7	141071121	141071900	+	0	NA	Intergenic	Intergenic	-2554	NM_001195278	100507421		NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
82489	chr16	17361151	17361650	+	0	NA	intron (NM_022166, intron 1 of 11)	MLT1H|LTR|ERVL-MaLR	109560	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
32841	chr10	110039351	110040130	+	0	NA	intron (NM_016824, intron 1 of 14)	MLT1F2|LTR|ERVL-MaLR	-31359	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
228165	chr9	97011771	97011930	+	0	NA	intron (NM_001355229, intron 1 of 4)	intron (NM_001355229, intron 1 of 4)	1755	NM_001355229	84278		NM_001355228	ENSG00000290770	MFSD14CP	HIATL2|MFSD14C	major facilitator superfamily domain containing 14C, pseudogene	pseudo
225322	chr9	34610721	34610980	+	0	NA	exon (NM_148179, exon 2 of 2)	exon (NM_148179, exon 2 of 2)	1247	NM_148178	138716		NM_148178	ENSG00000164967	RPP25L	C9orf23|bA296L22.5	ribonuclease P/MRP subunit p25 like	protein-coding
30754	chr10	84205271	84205900	+	0	NA	intron (NM_033100, intron 9 of 16)	MIRb|SINE|MIR	11048	NM_033100	92211		NM_033100	ENSG00000148600	CDHR1	CORD15|PCDH21|PRCAD|RP65	cadherin related family member 1	protein-coding
504	chr1	1196721	1197330	+	0	NA	intron (NM_001371649, intron 14 of 15)	intron (NM_001371649, intron 14 of 15)	9567	NM_148902	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
211362	chr7	104986271	104987200	+	0	NA	non-coding (NR_039981, exon 1 of 1)	non-coding (NR_039981, exon 1 of 1)	4430	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
203203	chr6	167735701	167735980	+	0	NA	Intergenic	Intergenic	-52053	NR_117092	441178		NM_001025489	ENSG00000203688	LINC02487	-	long intergenic non-protein coding RNA 2487	ncRNA
55742	chr12	108337351	108338050	+	0	NA	intron (NM_004072, intron 1 of 2)	intron (NM_004072, intron 1 of 2)	1611	NM_001142343	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
20913	chr1	202183451	202184000	+	0	NA	intron (NR_002930, intron 14 of 21)	intron (NR_002930, intron 14 of 21)	-10265	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
71045	chr14	104789951	104790700	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	3276	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
7795	chr1	36246201	36246600	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluSz|SINE|Alu	21957	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
165297	chr3	81490501	81490830	+	0	NA	intron (NM_000158, intron 15 of 15)	intron (NM_000158, intron 15 of 15)	270980	NM_000158	2632		NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	1,4-alpha-glucan branching enzyme 1	protein-coding
93444	chr17	18645751	18646050	+	0	NA	Intergenic	Intergenic	-1473	NM_001039397	254272		NM_001039397	ENSG00000189375	TBC1D28	-	TBC1 domain family member 28	protein-coding
78316	chr15	90948721	90948980	+	0	NA	intron (NM_001323619, intron 14 of 20)	intron (NM_001323619, intron 14 of 20)	-6026	NM_001017919	91433		NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
54320	chr12	89525701	89527330	+	0	NA	promoter-TSS (NM_001199782)	promoter-TSS (NM_001199782)	-253	NM_001199782	100528030		NM_001199781	ENSG00000259075	POC1B-GALNT4	GALNT4|GalNAc-T4	POC1B-GALNT4 readthrough	protein-coding
119670	chr19	40843171	40844530	+	0	NA	exon (NM_000762, exon 9 of 9)	exon (NM_000762, exon 9 of 9)	6597	NM_000762	1548		NM_000762	ENSG00000255974	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450 family 2 subfamily A member 6	protein-coding
191422	chr6	10414871	10415230	+	0	NA	promoter-TSS (NM_001372066)	promoter-TSS (NM_001372066)	24	NM_001372066	7020		NM_003220	ENSG00000137203	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha	protein-coding
156055	chr22	39986551	39986650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8354	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
95925	chr17	38920101	38920700	+	0	NA	non-coding (NR_073384, exon 8 of 8)	non-coding (NR_073384, exon 8 of 8)	-4768	NR_038847	100505576		NM_001414697	ENSG00000263874	LASP1NB	LINC00672	LASP1 neighbor	protein-coding
219176	chr8	66537201	66537400	+	0	NA	Intergenic	(TCTTT)n|Simple_repeat|Simple_repeat	43734	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
17137	chr1	156182501	156182700	+	0	NA	Intergenic	AluJo|SINE|Alu	-11504	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
178837	chr4	153641101	153641700	+	0	NA	intron (NR_134873, intron 2 of 2)	AluJo|SINE|Alu	1232	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
1165	chr1	2210621	2211300	+	0	NA	intron (NM_001282670, intron 2 of 7)	intron (NM_001282670, intron 2 of 7)	1760	NM_001282670	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
32148	chr10	101299951	101300050	+	0	NA	Intergenic	Intergenic	-36450	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
152448	chr22	20607301	20607500	+	0	NA	Intergenic	Intergenic	-82155	NR_024592	266697		NR_024592		POM121L4P	POM121L1|POM121L1P	POM121 transmembrane nucleoporin like 4, pseudogene	pseudo
30274	chr10	75164001	75164800	+	0	NA	intron (NM_144660, intron 2 of 4)	intron (NM_144660, intron 2 of 4)	-45754	NM_001324087	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
64312	chr14	23572571	23572900	+	0	NA	intron (NM_001146028, intron 3 of 5)	intron (NM_001146028, intron 3 of 5)	-4944	NR_148937	8906		NM_003917	ENSG00000213983	AP1G2	G2AD	adaptor related protein complex 1 subunit gamma 2	protein-coding
162198	chr3	47006771	47007180	+	0	NA	intron (NM_001365116, intron 44 of 52)	intron (NM_001365116, intron 44 of 52)	-4567	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
98217	chr17	46142421	46142930	+	0	NA	intron (NM_015443, intron 2 of 14).2	L1M5|LINE|L1	50107	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
17339	chr1	156481701	156482200	+	0	NA	intron (NM_001271629, intron 3 of 10)	MIRb|SINE|MIR	8737	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
92619	chr17	10077771	10078330	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-41393	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
44878	chr11	114280701	114280900	+	0	NA	intron (NR_164073, intron 2 of 3)	intron (NR_164073, intron 2 of 3)	-14350	NM_001372046	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
62898	chr13	110821751	110822180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	8260	NR_158538	105370362		NR_158538		LOC105370362	-	uncharacterized LOC105370362	ncRNA
106245	chr18	11991271	11991530	+	0	NA	intron (NM_014214, intron 1 of 7)	intron (NM_014214, intron 1 of 7)	9893	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
174614	chr4	40290871	40291300	+	0	NA	Intergenic	LTR8|LTR|ERV1	-16100	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
222366	chr8	133574721	133574980	+	0	NA	Intergenic	Intergenic	-2963	NM_173344	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
193659	chr6	30907601	30908850	+	0	NA	promoter-TSS (NM_001517).4	promoter-TSS (NM_001517).4	18	NM_001517	2968		NM_001517	ENSG00000213780	GTF2H4	P52|TFB2|TFIIH	general transcription factor IIH subunit 4	protein-coding
42054	chr11	67464221	67465630	+	0	NA	intron (NR_073410, intron 4 of 5)	CpG-4565	4326	NR_073410	80194		NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding
100302	chr17	59788401	59788900	+	0	NA	intron (NM_030938, intron 7 of 11)	AluSx1|SINE|Alu	-52616	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
90904	chr17	2474651	2474950	+	0	NA	intron (NM_024086, intron 3 of 9)	AluSq2|SINE|Alu	37088	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
234802	chrX	24021851	24021950	+	0	NA	intron (NM_030624, intron 2 of 3)	intron (NM_030624, intron 2 of 3)	5286	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
39409	chr11	60843921	60844580	+	0	NA	intron (NM_024098, intron 1 of 3)	intron (NM_024098, intron 1 of 3)	2137	NM_024098	79080		NM_024098	ENSG00000110104	CCDC86	Cgr1	coiled-coil domain containing 86	protein-coding
208429	chr7	66776471	66776630	+	0	NA	intron (NM_001367750, intron 2 of 5)	AluSx|SINE|Alu	20668	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
119124	chr19	39361521	39361980	+	0	NA	intron (NM_001384588, intron 4 of 13)	AluY|SINE|Alu	19329	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
138427	chr2	205763801	205764300	+	0	NA	intron (NM_018534, intron 13 of 15)	intron (NM_018534, intron 13 of 15)	81549	NM_201267	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
178331	chr4	145734471	145735330	+	0	NA	Intergenic	Intergenic	54754	NM_001080531	646603		NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
163750	chr3	52357721	52358380	+	0	NA	intron (NM_015512, intron 24 of 77)	intron (NM_015512, intron 24 of 77)	41731	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
42542	chr11	71610251	71610550	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-27525	NM_001005405	440051		NM_001005405	ENSG00000204571	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
180792	chr5	32277671	32277830	+	0	NA	intron (NM_001294344, intron 1 of 13)	intron (NM_001294344, intron 1 of 13)	35189	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
193909	chr6	31628801	31629080	+	0	NA	intron (NM_004638, intron 12 of 30).7	intron (NM_004638, intron 12 of 30).7	-4847	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
178004	chr4	139303551	139304230	+	0	NA	intron (NM_057175, intron 1 of 19)	L1MC4|LINE|L1	-1339	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
164230	chr3	56945551	56945730	+	0	NA	intron (NR_046572, intron 2 of 2)	L1PA4|LINE|L1	5600	NR_046572	100874200		NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
64588	chr14	25032501	25032700	+	0	NA	intron (NM_001304476, intron 1 of 6)	intron (NM_001304476, intron 1 of 6)	16400	NM_001304477	29091		NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding
41146	chr11	65593071	65593230	+	0	NA	TTS (NM_001351087)	TTS (NM_001351087)	2650	NM_033347	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
172260	chr4	1403601	1404500	+	0	NA	intron (NM_001290079, intron 1 of 1)	CpG	2392	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
44171	chr11	96228721	96229380	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-112388	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
62191	chr13	97585201	97585400	+	0	NA	Intergenic	Intergenic	151131	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
31124	chr10	89392001	89393500	+	0	NA	intron (NM_001548, intron 1 of 1)	intron (NM_001548, intron 1 of 1)	127	NM_001270928	3434		NM_001548	ENSG00000185745	IFIT1	C56|G10P1|IFI-56|IFI-56K|IFI56|IFIT-1|IFNAI1|ISG56|P56|RNM561	interferon induced protein with tetratricopeptide repeats 1	protein-coding
8479	chr1	40806801	40807450	+	0	NA	intron (NM_172163, intron 1 of 12)	intron (NM_172163, intron 1 of 12)	23338	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
60449	chr13	41013901	41014500	+	0	NA	5' UTR (NM_001370332, exon 2 of 11)	5' UTR (NM_001370332, exon 2 of 11)	5116	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
174713	chr4	42642051	42642900	+	0	NA	intron (NM_001105529, intron 1 of 35)	MamRTE1|LINE|RTE-BovB	14630	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
107351	chr18	45889701	45890100	+	0	NA	exon (NM_020964, exon 28 of 44)	exon (NM_020964, exon 28 of 44)	64225	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
142779	chr20	13009651	13010150	+	0	NA	intron (NM_018327, intron 1 of 11)	intron (NM_018327, intron 1 of 11)	928	NM_018327	55304		NM_018327	ENSG00000172296	SPTLC3	C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b	serine palmitoyltransferase long chain base subunit 3	protein-coding
51807	chr12	53412101	53412300	+	0	NA	3' UTR (NM_003109, exon 6 of 6)	3' UTR (NM_003109, exon 6 of 6)	-11655	NM_001164691	269		NM_020547	ENSG00000135409	AMHR2	AMHR|MISR2|MISRII|MRII	anti-Mullerian hormone receptor type 2	protein-coding
99061	chr17	48932301	48932500	+	0	NA	intron (NM_001317193, intron 5 of 6)	intron (NM_001317193, intron 5 of 6)	12442	NR_133679	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
227530	chr9	91458971	91459130	+	0	NA	Intergenic	MER61E|LTR|ERV1	-34424	NM_001290000	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
158573	chr3	4581151	4581650	+	0	NA	intron (NM_002222, intron 4 of 57)	intron (NM_002222, intron 4 of 57)	88052	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
94004	chr17	24188151	24188250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1665089	NM_001190452	100462977		NM_001190452		MTRNR2L1	HN1	MT-RNR2 like 1 (pseudogene)	pseudo
149302	chr21	28837411	28838080	+	0	NA	Intergenic	L1PB1|LINE|L1	47622	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
87606	chr16	74363351	74363650	+	0	NA	intron (NR_026950, intron 1 of 14)	L2c|LINE|L2	4755	NR_026950	283922		NR_026950	ENSG00000290890	PDPR2P	-	pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene	pseudo
61266	chr13	50079401	50079600	+	0	NA	intron (NR_152566, intron 1 of 13)	intron (NR_152566, intron 1 of 13)	2541	NR_152568	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
33389	chr10	117617671	117618030	+	0	NA	Intergenic	Intergenic	-72782	NR_002791	196047		NR_002791	ENSG00000229847	EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
43317	chr11	76287971	76288930	+	0	NA	Intergenic	Intergenic	-81948	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
161631	chr3	43293671	43294400	+	0	NA	intron (NM_001330750, intron 1 of 4)	L1ME4a|LINE|L1	7495	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
160813	chr3	33023101	33023930	+	0	NA	intron (NM_000404, intron 11 of 15)	intron (NM_000404, intron 11 of 15)	71871	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
103833	chr17	79441541	79441730	+	0	NA	intron (NM_001082575, intron 2 of 14)	MLT1C|LTR|ERVL-MaLR	74513	NM_001082575	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
216526	chr8	20590621	20590880	+	0	NA	Intergenic	LTR32|LTR|ERVL	24176	NR_145737	109616983		NR_145737		SNORD3F	RNU3P2|SNORD3P2|U3|U3.2	small nucleolar RNA, C/D box 3F	snoRNA
26284	chr10	14889321	14889730	+	0	NA	intron (NM_001193424, intron 2 of 5)	intron (NM_001193424, intron 2 of 5)	10625	NM_024670	79723		NM_024670	ENSG00000152455	SUV39H2	KMT1B	SUV39H2 histone lysine methyltransferase	protein-coding
164384	chr3	58305071	58305250	+	0	NA	Intergenic	Intergenic	-1085	NM_001348713	109703458		NM_001348712	ENSG00000255154	HTD2	-	hydroxyacyl-thioester dehydratase type 2	protein-coding
11492	chr1	90833421	90833880	+	0	NA	intron (NR_147930, intron 1 of 1)	intron (NR_147930, intron 1 of 1)	2511	NR_147932	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
114828	chr19	13822251	13822550	+	0	NA	intron (NM_023072, intron 9 of 12)	MER58B|DNA|hAT-Charlie	13959	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
108444	chr18	70166801	70167350	+	0	NA	intron (NM_173630, intron 12 of 48)	intron (NM_173630, intron 12 of 48)	38612	NM_001318520	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
219149	chr8	66428071	66429500	+	0	NA	promoter-TSS (NM_015169)	promoter-TSS (NM_015169)	192	NR_040434	100505676		NM_001242759	ENSG00000246145	RRS1-DT	RRS1-AS1	RRS1 divergent transcript	ncRNA
86748	chr16	67649151	67649350	+	0	NA	intron (NM_001317026, intron 19 of 37)	CpG-9843	4106	NM_001013838	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
54065	chr12	76028901	76029450	+	0	NA	3' UTR (NM_007350, exon 2 of 2)	3' UTR (NM_007350, exon 2 of 2)	2601	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
84425	chr16	30376221	30376480	+	0	NA	intron (NM_013292, intron 3 of 6)	MIR3|SINE|MIR	1548	NM_013292	29895		NM_013292	ENSG00000180209	MYL11	DA1C|HUMMLC2B|MLC2B|MRLC2|MYLPF	myosin light chain 11	protein-coding
158240	chr22	50295351	50295650	+	0	NA	intron (NM_001376886, intron 1 of 36)	MIR|SINE|MIR	4835	NM_001376883	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
164017	chr3	53195851	53196380	+	0	NA	Intergenic	CpG	27412	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
127514	chr2	42297221	42298200	+	0	NA	intron (NM_019063, intron 13 of 22)	intron (NM_019063, intron 13 of 22)	62328	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
168957	chr3	152379471	152379730	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-38610	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
941	chr1	1738631	1739930	+	0	NA	exon (NM_001199787, exon 3 of 7)	exon (NM_001199787, exon 3 of 7)	6719	NM_182838	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
10608	chr1	67674151	67675100	+	0	NA	Intergenic	Intergenic	-10576	NM_001924	1647		NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
140775	chr2	235493501	235494650	+	0	NA	promoter-TSS (NM_014914)	promoter-TSS (NM_014914)	32	NM_001244888	116987		NM_014914	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
231443	chr9	131260071	131260230	+	0	NA	3' UTR (NM_033387, exon 2 of 2)	3' UTR (NM_033387, exon 2 of 2)	16360	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
133880	chr2	129923251	129923750	+	0	NA	intron (NR_110285, intron 1 of 3)	intron (NR_110285, intron 1 of 3)	323	NR_110285	101927924		NR_110285	ENSG00000237574	LINC01856	-	long intergenic non-protein coding RNA 1856	ncRNA
200903	chr6	139116151	139116800	+	0	NA	Intergenic	Intergenic	-18605	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
13926	chr1	120141801	120142330	+	0	NA	Intergenic	Intergenic	34455	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
194201	chr6	32174101	32174300	+	0	NA	intron (NM_032741, intron 1 of 6).4	L2c|LINE|L2	-1084	NM_001371439	10554		NM_006411	ENSG00000204310	AGPAT1	1-AGPAT1|G15|LPAAT-alpha|LPAATA|LPLAT1	1-acylglycerol-3-phosphate O-acyltransferase 1	protein-coding
84373	chr16	30255401	30256000	+	0	NA	Intergenic	MER41A|LTR|ERV1	-7287	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
239478	chrY	56737371	56737980	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-216580	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
107678	chr18	49360671	49360830	+	0	NA	intron (NM_001374431, intron 6 of 16)	intron (NM_001374431, intron 6 of 16)	99895	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
54090	chr12	76071771	76072130	+	0	NA	intron (NM_139207, intron 2 of 15)	HAL1|LINE|L1	12735	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
49822	chr12	32104321	32104580	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	-2357	NM_001363603	636		NM_001714	ENSG00000151746	BICD1	BICD|bic-D 1	BICD cargo adaptor 1	protein-coding
219092	chr8	65857851	65858250	+	0	NA	Intergenic	Intergenic	-15986	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
168607	chr3	149352571	149352750	+	0	NA	Intergenic	Intergenic	-19024	NM_138786	116441		NM_138786	ENSG00000163762	TM4SF18	L6D	transmembrane 4 L six family member 18	protein-coding
97940	chr17	45182651	45183030	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-11355	NR_135646	105371795		NR_135646	ENSG00000267288	LOC105371795	-	uncharacterized LOC105371795	ncRNA
201556	chr6	149261421	149261980	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	-4149	NR_149096	105378049		NR_149096	ENSG00000225924	TAB2-AS1	-	TAB2 antisense RNA 1	ncRNA
56229	chr12	111812971	111813480	+	0	NA	3' UTR (NM_000690, exon 13 of 13)	3' UTR (NM_000690, exon 13 of 13)	13391	NR_106819	102465456		NR_106819	ENSG00000274697	MIR6761	hsa-mir-6761	microRNA 6761	ncRNA
49993	chr12	42228051	42228730	+	0	NA	intron (NR_135140, intron 2 of 6)	SVA_F|Retroposon|SVA	9858	NM_005748	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
224184	chr9	5375821	5376080	+	0	NA	intron (NM_018465, intron 3 of 5)	L1MB3|LINE|L1	-36074	NM_006911	6013		NM_006911	ENSG00000107018	RLN1	H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2	relaxin 1	protein-coding
189856	chr5	177130121	177130950	+	0	NA	Intergenic	Intergenic	-2544	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
200653	chr6	137043021	137043280	+	0	NA	intron (NM_001278724, intron 1 of 5)	AluJr|SINE|Alu	1162	NM_001278722	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
188773	chr5	157668871	157669280	+	0	NA	intron (NM_001308165, intron 1 of 5)	intron (NM_001308165, intron 1 of 5)	2405	NM_001308165	11063		NM_007017	ENSG00000039600	SOX30	-	SRY-box transcription factor 30	protein-coding
135120	chr2	157418021	157419380	+	0	NA	intron (NM_004288, intron 6 of 7)	intron (NM_004288, intron 6 of 7)	25389	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
148241	chr20	63637601	63637930	+	0	NA	Intergenic	AluYk4|SINE|Alu	10530	NR_132418	100505771		NR_132417	ENSG00000232442	MHENCR	-	melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489	ncRNA
157829	chr22	47210601	47211330	+	0	NA	Intergenic	Intergenic	-134606	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
1886	chr1	6436801	6437350	+	0	NA	intron (NM_031475, intron 2 of 12)	intron (NM_031475, intron 2 of 12)	-7179	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
235626	chrX	48142101	48142900	+	0	NA	Intergenic	L4_B_Mam|LINE|RTE-X	11874	NM_001079900	729201		NM_001079900	ENSG00000171478	SPACA5B	LYZL5B	sperm acrosome associated 5B	protein-coding
63136	chr13	113489901	113491850	+	0	NA	promoter-TSS (NM_001349744)	promoter-TSS (NM_001349744)	-146	NM_001349743	55002		NM_017905	ENSG00000150403	TMCO3	C13orf11	transmembrane and coiled-coil domains 3	protein-coding
174136	chr4	36227901	36228280	+	0	NA	intron (NR_146894, intron 2 of 32)	intron (NR_146894, intron 2 of 32)	15849	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
86971	chr16	68148871	68149230	+	0	NA	intron (NM_173165, intron 3 of 9)	HAL1|LINE|L1	63680	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
50965	chr12	49548651	49550050	+	0	NA	intron (NM_001314030, intron 8 of 14)	CpG	10320	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
191600	chr6	12053671	12053830	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	41438	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
109775	chr19	1135171	1135750	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	-3239	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
85190	chr16	46943151	46943250	+	0	NA	Intergenic	MER41B|LTR|ERV1	30474	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
7069	chr1	32014701	32015300	+	0	NA	intron (NR_073498, intron 1 of 8)	intron (NR_073498, intron 1 of 8)	1132	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
187448	chr5	142115451	142115750	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	6821	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
194080	chr6	31884521	31884980	+	0	NA	exon (NM_001289413, exon 18 of 26).2	exon (NM_001289413, exon 18 of 26).2	-5704	NM_001178044	80736		NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1	solute carrier family 44 member 4	protein-coding
162166	chr3	46982571	46983930	+	0	NA	intron (NM_015175, intron 1 of 53)	intron (NM_015175, intron 1 of 53)	-1240	NM_144716	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
86302	chr16	58649251	58649350	+	0	NA	Intergenic	Intergenic	-19474	NR_049763	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
28509	chr10	50325471	50325730	+	0	NA	intron (NM_147156, intron 8 of 10)	intron (NM_147156, intron 8 of 10)	-74084	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
79630	chr16	1145921	1146680	+	0	NA	Intergenic	Intergenic	-6806	NM_021098	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
236025	chrX	55119601	55120180	+	0	NA	Intergenic	Intergenic	30872	NM_207339	203569		NM_207339	ENSG00000234068	PAGE2	CT16.4|GAGEC2|GAGEE2|PAGE-2	PAGE family member 2	protein-coding
110512	chr19	2064601	2065000	+	0	NA	Intergenic	Intergenic	-13556	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
150592	chr21	43335701	43336300	+	0	NA	Intergenic	Intergenic	-3961	NR_103713	100126693		NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
222398	chr8	134161201	134161430	+	0	NA	Intergenic	Intergenic	274819	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
123470	chr19	54162181	54163280	+	0	NA	exon (NM_001145303, exon 10 of 15).6	exon (NM_001145303, exon 10 of 15).6	-3009	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
171307	chr3	195960271	195960430	+	0	NA	intron (NR_003264, intron 16 of 16)	AluJb|SINE|Alu	29929	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
191950	chr6	16130501	16131500	+	0	NA	intron (NM_013262, intron 2 of 6)	intron (NM_013262, intron 2 of 6)	1914	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
50990	chr12	49628451	49628750	+	0	NA	intron (NM_012272, intron 1 of 24)	AluY|SINE|Alu	5039	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
58242	chr12	128747371	128747730	+	0	NA	Intergenic	Intergenic	76408	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
232916	chr9	136867571	136867730	+	0	NA	Intergenic	AluJb|SINE|Alu	-1314	NM_153200	8721		NM_003792	ENSG00000107223	EDF1	CFAP280|EDF-1|MBF1	endothelial differentiation related factor 1	protein-coding
85165	chr16	46673421	46673680	+	0	NA	intron (NM_018206, intron 10 of 16)	intron (NM_018206, intron 10 of 16)	15628	NM_018206	55737		NM_018206	ENSG00000069329	VPS35	MEM3|PARK17	VPS35 retromer complex component	protein-coding
188674	chr5	157265301	157267070	+	0	NA	promoter-TSS (NM_001291721)	promoter-TSS (NM_001291721)	62	NM_001291722	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
147546	chr20	59686671	59686850	+	0	NA	intron (NM_001199506, intron 1 of 12)	intron (NM_001199506, intron 1 of 12)	10099	NM_001199506	116154		NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
200754	chr6	137813521	137814180	+	0	NA	Intergenic	Intergenic	-53409	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
22998	chr1	226120171	226120530	+	0	NA	Intergenic	Intergenic	-27653	NR_146443	107985353		NR_146443	ENSG00000234478	ACBD3-AS1	-	ACBD3 antisense RNA 1	ncRNA
159919	chr3	16992171	16993080	+	0	NA	intron (NM_015184, intron 1 of 5)	intron (NM_015184, intron 1 of 5)	59429	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
229888	chr9	126509051	126509350	+	0	NA	Intergenic	L2c|LINE|L2	-98696	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
119999	chr19	41923501	41925280	+	0	NA	intron (NM_001365103, intron 1 of 5)	MIR|SINE|MIR	4059	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
5993	chr1	26990851	26992100	+	0	NA	Intergenic	Intergenic	-2217	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
161709	chr3	43692271	43692430	+	0	NA	promoter-TSS (NM_001346469)	promoter-TSS (NM_001346469)	-756	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
204162	chr7	2409571	2411350	+	0	NA	intron (NM_018641, intron 1 of 1)	AluJr4|SINE|Alu	6849	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
98709	chr17	47946571	47947780	+	0	NA	3' UTR (NM_018129, exon 7 of 7)	3' UTR (NM_018129, exon 7 of 7)	5604	NM_018129	55163		NM_018129	ENSG00000108439	PNPO	HEL-S-302|PDXPO	pyridoxamine 5'-phosphate oxidase	protein-coding
152467	chr22	20709951	20710050	+	0	NA	intron (NM_001362863, intron 51 of 53)	intron (NM_001362863, intron 51 of 53)	8886	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
167078	chr3	126999251	126999900	+	0	NA	intron (NM_032242, intron 2 of 30)	intron (NM_032242, intron 2 of 30)	10981	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
21882	chr1	207798671	207799780	+	0	NA	Intergenic	Intergenic	2714	NR_029832	407026		NR_029832	ENSG00000284214	MIR29C	MIRN29C|miRNA29C|mir-29c	microRNA 29c	ncRNA
218928	chr8	60885501	60886100	+	0	NA	Intergenic	Intergenic	24998	NR_168431	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
142797	chr20	13771821	13772100	+	0	NA	intron (NM_001276380, intron 5 of 13)	intron (NM_001276380, intron 5 of 13)	12926	NM_016649	51575		NM_016649	ENSG00000089048	ESF1	ABTAP|C20orf6|HDCMC28P|bA526K24.1	ESF1 nucleolar pre-rRNA processing protein homolog	protein-coding
126321	chr2	27332771	27333130	+	0	NA	intron (NM_001521, intron 13 of 19)	AluSc|SINE|Alu	-2592	NR_038427	100505624		NR_038427	ENSG00000234945	GTF3C2-AS1	-	GTF3C2 antisense RNA 1	ncRNA
238009	chrX	134914521	134915800	+	0	NA	promoter-TSS (NM_019556)	promoter-TSS (NM_019556)	97	NM_001306188	56180		NM_019556	ENSG00000101928	MOSPD1	DJ473B4	motile sperm domain containing 1	protein-coding
108007	chr18	58714201	58714980	+	0	NA	intron (NM_173844, intron 7 of 15)	intron (NM_173844, intron 7 of 15)	-42717	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
219238	chr8	66924581	66926680	+	0	NA	promoter-TSS (NR_002599)	promoter-TSS (NR_002599)	-89	NR_152600	641638		NR_002599		SNHG6	HBII-276HG|NCRNA00058|U87HG	small nucleolar RNA host gene 6	ncRNA
96328	chr17	40022451	40022750	+	0	NA	intron (NM_014815, intron 21 of 25)	intron (NM_014815, intron 21 of 25)	3809	NR_106944	102466757		NR_106944	ENSG00000283721	MIR6884	hsa-mir-6884	microRNA 6884	ncRNA
120159	chr19	42238171	42239850	+	0	NA	intron (NM_019884, intron 2 of 10)	MER102b|DNA|hAT-Charlie	3592	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
151594	chr21	46698431	46699900	+	0	NA	Intergenic	TAR1|Satellite|telo	63491	NM_001242866	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
111514	chr19	4000021	4000280	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-7586	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
109466	chr19	800221	800500	+	0	NA	intron (NM_031991, intron 2 of 13)	intron (NM_031991, intron 2 of 13)	2908	NM_031990	5725		NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
24196	chr1	236004001	236004550	+	0	NA	intron (NM_002508, intron 12 of 19)	L1MC5a|LINE|L1	60815	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
155869	chr22	39488801	39489350	+	0	NA	3' UTR (NM_002409, exon 2 of 2)	3' UTR (NM_002409, exon 2 of 2)	1851	NM_001098270	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
33681	chr10	119895751	119896250	+	0	NA	intron (NR_037771, intron 1 of 17)	intron (NR_037771, intron 1 of 17)	3270	NM_007190	11196		NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A|iPLA1A|iPLA1beta	SEC23 interacting protein	protein-coding
237666	chrX	124303101	124303300	+	0	NA	Intergenic	L1M4|LINE|L1	-29460	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
185535	chr5	131348351	131348650	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA5|LINE|L1	84447	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
16668	chr1	155182001	155182500	+	0	NA	intron (NM_001256599, intron 9 of 9)	intron (NM_001256599, intron 9 of 9)	7496	NM_001256601	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
201752	chr6	149932421	149932780	+	0	NA	Intergenic	L1PA8|LINE|L1	-1913	NR_134598	105378052		NR_134598	ENSG00000293239	LOC105378052	-	uncharacterized LOC105378052	ncRNA
234619	chrX	19841921	19842250	+	0	NA	intron (NM_001353892, intron 1 of 17)	L1MB8|LINE|L1	-8934	NM_001353895	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
104617	chr17	81424271	81425700	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-24207	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
19029	chr1	169680521	169681330	+	0	NA	Intergenic	Intergenic	27932	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
175140	chr4	55400601	55401350	+	0	NA	intron (NM_018475, intron 1 of 5)	intron (NM_018475, intron 1 of 5)	5018	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
137160	chr2	191092651	191093150	+	0	NA	intron (NM_003151, intron 3 of 23)	L1PA6|LINE|L1	58094	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
9340	chr1	46618721	46618980	+	0	NA	Intergenic	LTR33|LTR|ERVL	-1959	NM_201403	148932		NM_145279	ENSG00000142961	MOB3C	MOB1E|MOBKL2C	MOB kinase activator 3C	protein-coding
89074	chr16	88463001	88463480	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	-5678	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
118584	chr19	36306071	36306230	+	0	NA	Intergenic	SST1|Satellite|centr	-5193	NR_029389	100134317		NR_029389		LOC100134317	-	uncharacterized LOC100134317	ncRNA
79727	chr16	1325351	1326500	+	0	NA	3' UTR (NM_003345, exon 7 of 7)	3' UTR (NM_003345, exon 7 of 7)	-7720	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
135218	chr2	159199221	159199480	+	0	NA	intron (NM_001350064, intron 19 of 26)	intron (NM_001350064, intron 19 of 26)	12515	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
72422	chr15	31455501	31455800	+	0	NA	Intergenic	L1M4b|LINE|L1	128815	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
17631	chr1	157117451	157117750	+	0	NA	Intergenic	Intergenic	-10762	NR_001560	360155		NR_001560	ENSG00000235700	CYCSP52	HC6|HCP2	CYCS pseudogene 52	pseudo
91886	chr17	7264601	7265730	+	0	NA	Intergenic	AluY|SINE|Alu	-1972	NM_001185022	1366		NM_001307	ENSG00000181885	CLDN7	CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1	claudin 7	protein-coding
48682	chr12	10565021	10565480	+	0	NA	intron (NR_146456, intron 1 of 2)	L1PA7|LINE|L1	11871	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
192182	chr6	17675821	17676250	+	0	NA	intron (NM_001278209, intron 2 of 22)	intron (NM_001278209, intron 2 of 22)	-30095	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
71931	chr15	22884301	22884700	+	0	NA	intron (NM_001033028, intron 8 of 15)	THE1D-int|LTR|ERVL-MaLR	32813	NM_001033028	23191		NM_014608	ENSG00000273749	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
75939	chr15	70257421	70257880	+	0	NA	Intergenic	Intergenic	-159733	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
104789	chr17	81721521	81721780	+	0	NA	TTS (NM_001270888)	TTS (NM_001270888)	9366	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
92311	chr17	8126461	8127630	+	0	NA	Intergenic	L2a|LINE|L2	-2939	NM_001165967	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
234787	chrX	24008371	24008730	+	0	NA	intron (NM_030624, intron 2 of 3)	intron (NM_030624, intron 2 of 3)	18636	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
138902	chr2	218033051	218033350	+	0	NA	Intergenic	Intergenic	-1734	NR_034176	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
140466	chr2	233172801	233173380	+	0	NA	intron (NM_001017915, intron 17 of 26).2	AluSz|SINE|Alu	-78481	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
32212	chr10	101786751	101787150	+	0	NA	intron (NM_001142434, intron 14 of 14)	AluSc|SINE|Alu	-3537	NM_006993	10360		NM_006993	ENSG00000107833	NPM3	PORMIN|TMEM123	nucleophosmin/nucleoplasmin 3	protein-coding
40394	chr11	64017471	64017830	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	-18281	NM_013280	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
110716	chr19	2311351	2311450	+	0	NA	Intergenic	MIR|SINE|MIR	-3246	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
16377	chr1	154386481	154387830	+	0	NA	Intergenic	HAL1|LINE|L1	-18188	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
150796	chr21	43894371	43894530	+	0	NA	intron (NM_001369878, intron 1 of 8)	L1MA4|LINE|L1	-22338	NM_001369880	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
66153	chr14	60332951	60333250	+	0	NA	Intergenic	L1MA4|LINE|L1	9904	NR_146481	101927729		NR_146481	ENSG00000258556	LINC02322	-	long intergenic non-protein coding RNA 2322	ncRNA
131203	chr2	95042551	95042650	+	0	NA	intron (NM_022440, intron 1 of 1)	intron (NM_022440, intron 1 of 1)	16892	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
56905	chr12	120366601	120366800	+	0	NA	intron (NM_002442, intron 4 of 14)	intron (NM_002442, intron 4 of 14)	2464	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
202060	chr6	154218571	154219130	+	0	NA	intron (NM_001130700, intron 7 of 11)	intron (NM_001130700, intron 7 of 11)	111231	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
112561	chr19	6589401	6589600	+	0	NA	intron (NM_001330332, intron 2 of 3)	AluSx1|SINE|Alu	1650	NM_001330332	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
208204	chr7	65078821	65079250	+	0	NA	Intergenic	AluSx1|SINE|Alu	8497	NR_145713	109617022		NR_145713	ENSG00000206785	SNORA15B-2	SNORA15C	small nucleolar RNA, H/ACA box 15B-2	snoRNA
147742	chr20	62403101	62403500	+	0	NA	intron (NM_031215, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	3983	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
94192	chr17	28569951	28570050	+	0	NA	intron (NM_033198, intron 3 of 11)	L2c|LINE|L2	1524	NM_033198	94005		NM_033198	ENSG00000087111	PIGS	DEE95|GPIBD18|PIG-S	phosphatidylinositol glycan anchor biosynthesis class S	protein-coding
212252	chr7	121442421	121443150	+	0	NA	Intergenic	Intergenic	-46417	NM_001040020	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
9938	chr1	54490501	54491000	+	0	NA	Intergenic	Intergenic	-57478	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
6975	chr1	31789101	31790450	+	0	NA	TTS (NM_001281988)	TTS (NM_001281988)	-25435	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
80362	chr16	2517271	2517730	+	0	NA	intron (NM_001198569, intron 2 of 3)	intron (NM_001198569, intron 2 of 3)	-2871	NM_015944	51005		NM_015944	ENSG00000162066	AMDHD2	CGI-14	amidohydrolase domain containing 2	protein-coding
138652	chr2	212725251	212725550	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-69931	NR_131942	102725079		NR_131941	ENSG00000234308	LINC01878	-	long intergenic non-protein coding RNA 1878	ncRNA
75288	chr15	65130801	65131450	+	0	NA	intron (NM_005707, intron 1 of 4)	MER1A|DNA|hAT-Charlie	2683	NM_005707	10081		NM_005707	ENSG00000090470	PDCD7	59K|ES18|HES18	programmed cell death 7	protein-coding
146152	chr20	48715621	48716500	+	0	NA	intron (NM_020820, intron 5 of 39)	intron (NM_020820, intron 5 of 39)	111939	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
180568	chr5	14705151	14705250	+	0	NA	3' UTR (NM_054027, exon 12 of 12)	3' UTR (NM_054027, exon 12 of 12)	-7494	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
199843	chr6	127758621	127758880	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L4_B_Mam|LINE|RTE-X	96438	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
19197	chr1	172393801	172394980	+	0	NA	intron (NM_001350206, intron 20 of 20)	intron (NM_001350206, intron 20 of 20)	-26295	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
140498	chr2	233198221	233198480	+	0	NA	exon (NM_005541, exon 25 of 27).2	exon (NM_005541, exon 25 of 27).2	-53221	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
70950	chr14	104665171	104666200	+	0	NA	promoter-TSS (NR_135293)	promoter-TSS (NR_135293)	-127	NR_135293	101929634		NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
150768	chr21	43803001	43803630	+	0	NA	intron (NM_003683, intron 12 of 12)	intron (NM_003683, intron 12 of 12)	9252	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
12345	chr1	101129951	101130550	+	0	NA	Intergenic	L2c|LINE|L2	104404	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
191878	chr6	15317051	15317830	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	68585	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
114	chr1	489251	489350	+	0	NA	Intergenic	Intergenic	6145	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
136708	chr2	181152571	181153080	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	28988	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
42746	chr11	72714021	72714280	+	0	NA	intron (NR_161388, intron 2 of 29)	intron (NR_161388, intron 2 of 29)	8190	NR_161388	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
181693	chr5	50591171	50591880	+	0	NA	Intergenic	Intergenic	-74406	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
93483	chr17	18924971	18925730	+	0	NA	intron (NM_001243940, intron 9 of 9)	intron (NM_001243940, intron 9 of 9)	-25326	NM_001282417	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
65799	chr14	54722871	54723050	+	0	NA	intron (NM_001161576, intron 2 of 10)	intron (NM_001161576, intron 2 of 10)	-31873	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
61791	chr13	75323321	75323580	+	0	NA	intron (NM_014832, intron 11 of 20)	intron (NM_014832, intron 11 of 20)	82862	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
180596	chr5	15292371	15292530	+	0	NA	Intergenic	L1PA3|LINE|L1	-25890	NR_109944	101929454		NR_109944		LINC02149	-	long intergenic non-protein coding RNA 2149	ncRNA
182410	chr5	61343451	61344280	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	11607	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
119977	chr19	41901521	41902150	+	0	NA	intron (NM_004706, intron 14 of 28)	intron (NM_004706, intron 14 of 28)	17392	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
152838	chr22	21972221	21972880	+	0	NA	intron (NM_001349845, intron 5 of 18)	intron (NM_001349845, intron 5 of 18)	10237	NM_001349847	8940		NM_003935	ENSG00000100038	TOP3B	TOP3B1	DNA topoisomerase III beta	protein-coding
96964	chr17	42238071	42238430	+	0	NA	intron (NM_012448, intron 1 of 18)	AluJr|SINE|Alu	38141	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
178447	chr4	148044971	148045550	+	0	NA	intron (NM_024605, intron 19 of 22)	intron (NM_024605, intron 19 of 22)	262665	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
5065	chr1	24656851	24657550	+	0	NA	intron (NR_159383, intron 11 of 19)	intron (NR_159383, intron 11 of 19)	13621	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
15293	chr1	149837951	149838250	+	0	NA	intron (NR_168447, intron 1 of 1)	intron (NR_168447, intron 1 of 1)	3104	NM_001005464	333932		NM_001005464	ENSG00000203852	H3C15	H3/n|H3/o|H3C13|H3C14|HIST2H3A	H3 clustered histone 15	protein-coding
101031	chr17	64787301	64787650	+	0	NA	intron (NR_024386, intron 8 of 10)	MIRb|SINE|MIR	-5476	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
211530	chr7	105353751	105354600	+	0	NA	intron (NM_001350742, intron 2 of 16)	intron (NM_001350742, intron 2 of 16)	34746	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
143824	chr20	32487251	32488150	+	0	NA	intron (NM_001256798, intron 4 of 10)	L2b|LINE|L2	-4210	NM_001351680	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
155735	chr22	39145101	39147150	+	0	NA	intron (NM_001346743, intron 2 of 5)	CpG	6555	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
32724	chr10	104266151	104266600	+	0	NA	intron (NM_001191003, intron 5 of 5)	intron (NM_001191003, intron 5 of 5)	2030	NR_039702	100616323		NR_039702	ENSG00000266852	MIR4482	MIR4482-1|hsa-mir-4482-1	microRNA 4482	ncRNA
122155	chr19	48880251	48882480	+	0	NA	intron (NM_003323, intron 12 of 12)	AluSx|SINE|Alu	8973	NM_014330	23645		NM_014330	ENSG00000087074	PPP1R15A	GADD34	protein phosphatase 1 regulatory subunit 15A	protein-coding
223503	chr8	144093121	144093550	+	0	NA	Intergenic	L1PA5|LINE|L1	-1741	NM_001916	1537		NM_001916	ENSG00000179091	CYC1	MC3DN6|UQCR4	cytochrome c1	protein-coding
238303	chrX	149493521	149495250	+	0	NA	intron (NR_104128, intron 6 of 8)	intron (NR_104128, intron 6 of 8)	10921	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
27628	chr10	32945321	32945680	+	0	NA	intron (NM_002211, intron 1 of 15)	AluY|SINE|Alu	-9942	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
109498	chr19	826001	826750	+	0	NA	Intergenic	L1MB7|LINE|L1	-1462	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
74050	chr15	52488871	52489680	+	0	NA	intron (NM_000259, intron 1 of 40)	L1MB2|LINE|L1	39605	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
167934	chr3	136184551	136185480	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSz|SINE|Alu	9453	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
110133	chr19	1599421	1600350	+	0	NA	intron (NM_006830, intron 1 of 2)	MIR|SINE|MIR	5577	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
101304	chr17	66468351	66468450	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-51546	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
165246	chr3	73038071	73038580	+	0	NA	intron (NM_001318025, intron 2 of 7)	intron (NM_001318025, intron 2 of 7)	-23334	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
159852	chr3	16519271	16519430	+	0	NA	Intergenic	MIRc|SINE|MIR	-5651	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
235388	chrX	45041201	45041400	+	0	NA	intron (NM_001291416, intron 8 of 28)	SVA_D|Retroposon|SVA	159576	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
61982	chr13	79589801	79590200	+	0	NA	Intergenic	Intergenic	23273	NR_125772	103724388		NR_125772	ENSG00000227676	LINC01068	-	long intergenic non-protein coding RNA 1068	ncRNA
99303	chr17	49802701	49803130	+	0	NA	intron (NM_001199155, intron 4 of 13)	AluJb|SINE|Alu	14234	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
53511	chr12	66713721	66714400	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-34984	NM_001178074	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
237698	chrX	124374421	124374680	+	0	NA	Intergenic	L1PA8|LINE|L1	27987	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
107800	chr18	51183021	51183280	+	0	NA	intron (NM_016626, intron 1 of 1)	intron (NM_016626, intron 1 of 1)	14531	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
24358	chr1	240687721	240688100	+	0	NA	Intergenic	Intergenic	-75755	NM_022469	64388		NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC|STHAG9	gremlin 2, DAN family BMP antagonist	protein-coding
216722	chr8	22396301	22396550	+	0	NA	intron (NM_001351660, intron 1 of 8)	(AG)n|Simple_repeat|Simple_repeat	3589	NM_001351659	23516		NM_015359	ENSG00000104635	SLC39A14	HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
79915	chr16	1712621	1712880	+	0	NA	intron (NM_001318852, intron 1 of 31)	intron (NM_001318852, intron 1 of 31)	6555	NM_001040439	23162		NM_015133	ENSG00000138834	MAPK8IP3	JIP-3|JIP3|JSAP1|NEDBA|SYD2|syd	mitogen-activated protein kinase 8 interacting protein 3	protein-coding
181794	chr5	50958871	50959030	+	0	NA	Intergenic	Intergenic	11237	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
45005	chr11	116995051	116995830	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJb|SINE|Alu	102988	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
206405	chr7	31620051	31620150	+	0	NA	intron (NM_194300, intron 8 of 12)	L1PA3|LINE|L1	-66917	NM_001145123	10842		NM_006658	ENSG00000106341	PPP1R17	C7orf16|GSBS	protein phosphatase 1 regulatory subunit 17	protein-coding
145184	chr20	38874401	38876600	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-50917	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
69006	chr14	91496821	91497430	+	0	NA	intron (NR_158976, intron 2 of 16)	intron (NR_158976, intron 2 of 16)	13185	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
183774	chr5	81805271	81805430	+	0	NA	Intergenic	L1MA5A|LINE|L1	-54097	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
189669	chr5	176387951	176389610	+	0	NA	promoter-TSS (NM_016391)	promoter-TSS (NM_016391)	29	NM_138820	192286		NM_138820	ENSG00000146066	HIGD2A	HIG2A|RCF1b	HIG1 hypoxia inducible domain family member 2A	protein-coding
118036	chr19	34229871	34230630	+	0	NA	TTS (NM_001384427)	TTS (NM_001384427)	-24304	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
133556	chr2	121076821	121077300	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	208142	NM_014553	29842		NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
128356	chr2	54964871	54965630	+	0	NA	intron (NM_001039753, intron 37 of 40)	intron (NM_001039753, intron 37 of 40)	45022	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
29314	chr10	69339371	69339730	+	0	NA	intron (NM_000188, intron 1 of 17)	intron (NM_000188, intron 1 of 17)	20703	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
40024	chr11	62670851	62672000	+	0	NA	promoter-TSS (NM_001085372)	promoter-TSS (NM_001085372)	-248	NM_001085372	790955		NM_001085372	ENSG00000204922	UQCC3	C11orf83|CCDS41658.1|MC3DN9|UNQ655	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding
10807	chr1	77761671	77761830	+	0	NA	Intergenic	Intergenic	-1898	NM_015017	23032		NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
126545	chr2	28588021	28588280	+	0	NA	intron (NM_153021, intron 26 of 57)	intron (NM_153021, intron 26 of 57)	21793	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
114472	chr19	12736771	12738150	+	0	NA	promoter-TSS (NM_004317)	promoter-TSS (NM_004317)	-37	NM_004317	439		NM_004317	ENSG00000198356	GET3	ARSA-I|ARSA1|ASNA-I|ASNA1|CMD2H|TRC40	guided entry of tail-anchored proteins factor 3, ATPase	protein-coding
210364	chr7	99589021	99589680	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-8917	NM_001195542	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
208810	chr7	73629151	73630000	+	0	NA	Intergenic	AluJo|SINE|Alu	-5053	NM_032952	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
195544	chr6	37442151	37443500	+	0	NA	intron (NM_015050, intron 2 of 23)	intron (NM_015050, intron 2 of 23)	9604	NM_015050	23070		NM_015050	ENSG00000137200	CMTR1	FTSJD2|KIAA0082|MTr1|hMTr1	cap methyltransferase 1	protein-coding
207384	chr7	44141701	44142100	+	0	NA	promoter-TSS (NM_021223)	promoter-TSS (NM_021223)	-568	NM_021223	58498		NM_021223	ENSG00000106631	MYL7	MYL2A|MYLC2A	myosin light chain 7	protein-coding
78123	chr15	90351151	90351250	+	0	NA	Intergenic	AluY|SINE|Alu	-1084	NM_001004309	342132		NM_001004309	ENSG00000196391	ZNF774	-	zinc finger protein 774	protein-coding
134098	chr2	131831501	131831980	+	0	NA	Intergenic	Intergenic	-30079	NR_161366	408029		NR_161366	ENSG00000290618	CDRT15P3	C2orf27B	CDRT15 pseudogene 3	ncRNA
75106	chr15	64466471	64466880	+	0	NA	intron (NM_015042, intron 1 of 9)	intron (NM_015042, intron 1 of 9)	6097	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
35979	chr11	2860551	2861300	+	0	NA	intron (NR_130721, intron 1 of 2)	intron (NR_130721, intron 1 of 2)	644	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
186783	chr5	139349571	139349730	+	0	NA	intron (NM_001033112, intron 1 of 3)	intron (NM_001033112, intron 1 of 3)	7216	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
31971	chr10	100741401	100741600	+	0	NA	intron (NM_001374303, intron 1 of 2)	intron (NM_001374303, intron 1 of 2)	-4082	NM_003987	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
205694	chr7	23261751	23262300	+	0	NA	intron (NM_002510, intron 6 of 10)	intron (NM_002510, intron 6 of 10)	15250	NM_001005340	10457		NM_002510	ENSG00000136235	GPNMB	HGFIN|NMB|PLCA3	glycoprotein nmb	protein-coding
189580	chr5	175519771	175519930	+	0	NA	intron (NM_001322978, intron 8 of 10)	intron (NM_001322978, intron 8 of 10)	41290	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
34946	chr11	451871	452030	+	0	NA	intron (NR_138046, intron 1 of 12)	intron (NR_138046, intron 1 of 12)	1671	NM_001329545	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
26243	chr10	14602921	14603050	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	1416	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
187467	chr5	142133651	142133750	+	0	NA	intron (NM_030571, intron 3 of 7)	intron (NM_030571, intron 3 of 7)	24921	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
201880	chr6	150815051	150815550	+	0	NA	intron (NM_001329799, intron 10 of 15)	intron (NM_001329799, intron 10 of 15)	-50379	NR_146719	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
103443	chr17	78269571	78269730	+	0	NA	intron (NR_073178, intron 4 of 6)	intron (NR_073178, intron 4 of 6)	8842	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
190424	chr5	179831201	179831700	+	0	NA	intron (NM_003900, intron 5 of 7).2	AluSx|SINE|Alu	10545	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
95209	chr17	35241701	35243900	+	0	NA	promoter-TSS (NM_001330183)	promoter-TSS (NM_001330183)	-272	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
174278	chr4	38306321	38306830	+	0	NA	Intergenic	Intergenic	-60339	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
91201	chr17	3908471	3908830	+	0	NA	intron (NM_002558, intron 1 of 11)	intron (NM_002558, intron 1 of 11)	7815	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
50492	chr12	47788721	47789380	+	0	NA	intron (NR_160435, intron 18 of 24)	intron (NR_160435, intron 18 of 24)	15812	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
27446	chr10	31922001	31922930	+	0	NA	intron (NM_018287, intron 1 of 19)	AluJo|SINE|Alu	6366	NM_001270698	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
137313	chr2	195677321	195677880	+	0	NA	intron (NM_020342, intron 1 of 9)	L1ME3|LINE|L1	20374	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
31302	chr10	92596871	92597580	+	0	NA	intron (NM_004523, intron 1 of 21)	intron (NM_004523, intron 1 of 21)	4095	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
54579	chr12	92399951	92400680	+	0	NA	Intergenic	Intergenic	-21216	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
163707	chr3	52279411	52281130	+	0	NA	Intergenic	Intergenic	-1621	NM_025222	80335		NM_025222	ENSG00000164091	WDR82	MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A	WD repeat domain 82	protein-coding
198931	chr6	110388771	110389130	+	0	NA	intron (NM_001368172, intron 5 of 5)	MER89|LTR|ERV1	26625	NM_001372108	8528		NM_003649	ENSG00000203797	DDO	DASOX|DASPO|DDO-1|DDO-2	D-aspartate oxidase	protein-coding
55546	chr12	105569971	105570130	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-134153	NR_110109	101929110		NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility 18	ncRNA
58118	chr12	124883521	124883980	+	0	NA	Intergenic	Intergenic	-19886	NM_001082959	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
199221	chr6	111808021	111808880	+	0	NA	intron (NM_002037, intron 2 of 13)	LTR33|LTR|ERVL	-48533	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
114565	chr19	12896801	12897550	+	0	NA	intron (NM_000159, intron 9 of 11)	intron (NM_000159, intron 9 of 11)	6015	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
227362	chr9	89483801	89484930	+	0	NA	intron (NM_001371194, intron 1 of 15)	(GT)n|Simple_repeat|Simple_repeat	-4475	NR_163884	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
78788	chr15	99438471	99439030	+	0	NA	Intergenic	Intergenic	-126667	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
1837	chr1	6258551	6259000	+	0	NA	intron (NM_207370, intron 1 of 5)	intron (NM_207370, intron 1 of 5)	2323	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
44924	chr11	115563151	115563250	+	0	NA	Intergenic	MLT2B2|LTR|ERVL	-58785	NM_001301043	23705		NM_014333	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
207230	chr7	43697721	43697980	+	0	NA	intron (NM_001321199, intron 1 of 6)	intron (NM_001321199, intron 1 of 6)	31673	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
173309	chr4	7294471	7295080	+	0	NA	intron (NM_020777, intron 1 of 26)	(CCTCTC)n|Simple_repeat|Simple_repeat	-15675	NR_039961	100616471		NR_039961	ENSG00000264658	MIR4798	-	microRNA 4798	ncRNA
183673	chr5	80601171	80601750	+	0	NA	Intergenic	AluSx|SINE|Alu	21064	NR_125754	103689917		NR_125754	ENSG00000251221	LINC01337	TCONS_00009713	long intergenic non-protein coding RNA 1337	ncRNA
96098	chr17	39621471	39622710	+	0	NA	Intergenic	Intergenic	-4862	NM_032192	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
193898	chr6	31617551	31617650	+	0	NA	TTS (NM_001623).6	TTS (NM_001623).6	1609	NM_032955	199		NM_001623	ENSG00000204472	AIF1	AIF-1|IBA1|IRT-1|IRT1	allograft inflammatory factor 1	protein-coding
58811	chr12	132812371	132813130	+	0	NA	intron (NM_005895, intron 4 of 23)	Tigger1|DNA|TcMar-Tigger	15639	NM_005895	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
19399	chr1	174156151	174156530	+	0	NA	intron (NR_121197, intron 2 of 3)	AluSx1|SINE|Alu	2947	NR_121197	102724601		NR_121197	ENSG00000227373	RABGAP1L-DT	-	RABGAP1L divergent transcript	ncRNA
30046	chr10	73812871	73813130	+	0	NA	non-coding (NR_160047, exon 22 of 22)	non-coding (NR_160047, exon 22 of 22)	-1180	NR_160744	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
31748	chr10	97780301	97780500	+	0	NA	Intergenic	L2a|LINE|L2	-8401	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
200115	chr6	130207671	130208500	+	0	NA	intron (NM_001258275, intron 7 of 13)	MIRb|SINE|MIR	7800	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
83613	chr16	28202351	28203250	+	0	NA	intron (NM_015171, intron 1 of 23)	L2c|LINE|L2	9165	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
205793	chr7	23722571	23722730	+	0	NA	intron (NM_031414, intron 4 of 23)	L1P2|LINE|L1	12431	NM_031414	56164		NM_031414	ENSG00000196335	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
84863	chr16	31157201	31157630	+	0	NA	Intergenic	Intergenic	-7349	NM_001258290	146547		NM_173502	ENSG00000178226	PRSS36	-	serine protease 36	protein-coding
63225	chr13	113875621	113877280	+	0	NA	Intergenic	Intergenic	7036	NR_047035	100874178		NR_047035	ENSG00000226921	LINC00454	-	long intergenic non-protein coding RNA 454	ncRNA
186684	chr5	138658501	138659300	+	0	NA	Intergenic	Intergenic	-83499	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
97442	chr17	43578571	43579330	+	0	NA	Intergenic	Intergenic	-32610	NM_001261437	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
173003	chr4	4333301	4333500	+	0	NA	Intergenic	Intergenic	43149	NM_001330625	166793		NM_145291	ENSG00000168826	ZBTB49	ZNF509	zinc finger and BTB domain containing 49	protein-coding
107214	chr18	36167771	36167930	+	0	NA	intron (NR_137173, intron 19 of 20)	AluJb|SINE|Alu	19585	NR_134605	101927809		NR_134605	ENSG00000260552	COSMOC	-	cell fate and sterol metabolism associated divergent transcript of MOCOS	ncRNA
144322	chr20	34879051	34879350	+	0	NA	intron (NM_001076552, intron 1 of 18)	AluY|SINE|Alu	2588	NM_018677	55902		NM_018677	ENSG00000131069	ACSS2	ACAS2|ACECS|ACS|ACSA|AceCS1|dJ1161H23.1	acyl-CoA synthetase short chain family member 2	protein-coding
117490	chr19	19814601	19814800	+	0	NA	intron (NM_001099269, intron 1 of 3)	L1PREC2|LINE|L1	7050	NM_001099269	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
11965	chr1	94022021	94022280	+	0	NA	intron (NM_000350, intron 32 of 49)	intron (NM_000350, intron 32 of 49)	98998	NM_000350	24		NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
157410	chr22	45007471	45008030	+	0	NA	intron (NM_001284296, intron 2 of 13)	CpG	1153	NM_001284296	112885		NM_138415	ENSG00000056487	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
18793	chr1	167601421	167602100	+	0	NA	Intergenic	Intergenic	-28433	NM_001322923	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
216895	chr8	22682751	22683050	+	0	NA	Intergenic	Intergenic	9464	NM_001199880	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
62697	chr13	102798551	102799580	+	0	NA	promoter-TSS (NM_001318732)	promoter-TSS (NM_001318732)	-54	NM_001159596	54841		NM_017693	ENSG00000134897	BIVM	-	basic, immunoglobulin-like variable motif containing	protein-coding
44677	chr11	110526351	110527080	+	0	NA	Intergenic	L1PA15|LINE|L1	96767	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
171350	chr3	196055701	196056450	+	0	NA	intron (NM_001313966, intron 14 of 16)	AluJr|SINE|Alu	26015	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
191907	chr6	15420871	15421630	+	0	NA	intron (NM_001267040, intron 3 of 17)	L1MEc|LINE|L1	172395	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
187838	chr5	146915921	146916380	+	0	NA	intron (NR_047115, intron 3 of 3)	intron (NR_047115, intron 3 of 3)	3356	NR_047115	100874361		NR_047115	ENSG00000249553	PPP2R2B-IT1	-	PPP2R2B intronic transcript 1	ncRNA
5799	chr1	26554951	26555250	+	0	NA	TTS (NR_031740)	TTS (NR_031740)	558	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
167162	chr3	128067771	128068750	+	0	NA	intron (NM_013336, intron 11 of 11)	L2c|LINE|L2	-7550	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
57417	chr12	121839251	121840430	+	0	NA	intron (NM_002150, intron 13 of 13)	intron (NM_002150, intron 13 of 13)	19019	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
68299	chr14	77213421	77213680	+	0	NA	intron (NM_020431, intron 2 of 23)	intron (NM_020431, intron 2 of 23)	31752	NM_020431	57156		NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|SPG87|hsCSC1	transmembrane protein 63C	protein-coding
9404	chr1	47446801	47447630	+	0	NA	Intergenic	Intergenic	9171	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
77665	chr15	85579221	85579480	+	0	NA	exon (NM_006738, exon 7 of 37)	exon (NM_006738, exon 7 of 37)	-40600	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
237283	chrX	111963251	111963350	+	0	NA	intron (NM_012471, intron 1 of 10)	L1PA4|LINE|L1	81403	NM_001195577	100329135		NM_001195576	ENSG00000204025	TRPC5OS	TRPC5-AS1	TRPC5 opposite strand	protein-coding
221256	chr8	122779021	122779280	+	0	NA	Intergenic	Intergenic	-2505	NM_001362797	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
165279	chr3	75621671	75621830	+	0	NA	Intergenic	(GCAG)n|Simple_repeat|Simple_repeat	-9013	NR_031714	100302212		NR_031714	ENSG00000283894	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
119808	chr19	41340001	41340680	+	0	NA	intron (NM_000660, intron 5 of 6)	AluSx1|SINE|Alu	13582	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
177854	chr4	128063971	128064130	+	0	NA	intron (NM_178043, intron 1 of 10)	AluSx|SINE|Alu	2738	NM_032239	55132		NM_018078	ENSG00000138709	LARP1B	LARP2	La ribonucleoprotein 1B	protein-coding
11990	chr1	94854461	94855100	+	0	NA	intron (NR_146575, intron 9 of 14)	MER20|DNA|hAT-Charlie	30287	NM_001350223	126969		NM_152369	ENSG00000143036	SLC44A3	CTL3	solute carrier family 44 member 3	protein-coding
6927	chr1	31665471	31666030	+	0	NA	intron (NM_001856, intron 54 of 70)	intron (NM_001856, intron 54 of 70)	-20874	NM_012392	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
202119	chr6	154778651	154778750	+	0	NA	intron (NM_001286199, intron 4 of 20)	AluSz6|SINE|Alu	45284	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
132117	chr2	101551521	101551780	+	0	NA	Intergenic	Intergenic	-76538	NM_001367509	731220		NM_207403	ENSG00000196460	RFX8	-	regulatory factor X8	protein-coding
16179	chr1	153793901	153794100	+	0	NA	promoter-TSS (NR_126565)	promoter-TSS (NR_126565)	53	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
193866	chr6	31569601	31569800	+	0	NA	intron (NR_149045, intron 1 of 1)	AluSx|SINE|Alu	-2399	NM_001159740	4049		NM_000595	ENSG00000226979	LTA	LT|TNFB|TNFSF1|TNLG1E	lymphotoxin alpha	protein-coding
191657	chr6	13414171	13414430	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	-6163	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
86124	chr16	57673551	57673850	+	0	NA	intron (NM_001308360, intron 2 of 10)	L2c|LINE|L2	5394	NM_001308360	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
123335	chr19	53746301	53746580	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2196	NR_030216	574494		NR_030216	ENSG00000207634	MIR521-1	MIRN521-1|mir-521-1	microRNA 521-1	ncRNA
138535	chr2	207521471	207522000	+	0	NA	Intergenic	MIR|SINE|MIR	-8227	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
142542	chr20	5112441	5114130	+	0	NA	promoter-TSS (NM_001330987)	promoter-TSS (NM_001330987)	-198	NM_001330986	29058		NM_014145	ENSG00000089063	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
113055	chr19	8154021	8154350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4593	NM_032447	84467		NM_032447	ENSG00000142449	FBN3	-	fibrillin 3	protein-coding
237912	chrX	131830571	131831130	+	0	NA	promoter-TSS (NR_026975)	promoter-TSS (NR_026975)	-207	NR_026975	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
1535	chr1	3316471	3317130	+	0	NA	intron (NM_199454, intron 3 of 16)	intron (NM_199454, intron 3 of 16)	-137865	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
100781	chr17	64006001	64006200	+	0	NA	intron (NM_001099786, intron 3 of 5)	L2a|LINE|L2	823	NM_000873	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
82037	chr16	12095171	12095550	+	0	NA	intron (NM_032167, intron 11 of 20)	intron (NM_032167, intron 11 of 20)	118626	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
147411	chr20	58855201	58855400	+	0	NA	exon (NM_001077490, exon 1 of 13)	exon (NM_001077490, exon 1 of 13)	2319	NM_001077490	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
77690	chr15	85645501	85645800	+	0	NA	intron (NM_007200, intron 9 of 36)	intron (NM_007200, intron 9 of 36)	25700	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
117761	chr19	29678321	29678830	+	0	NA	Intergenic	Intergenic	13114	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
168650	chr3	150386801	150387400	+	0	NA	Intergenic	AluSp|SINE|Alu	-21198	NM_014779	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
127963	chr2	46650521	46651150	+	0	NA	Intergenic	L2a|LINE|L2	33620	NM_014171	9419		NM_014171	ENSG00000119878	CRIPT	HSPC139|RTS3|SSMDF	CXXC repeat containing interactor of PDZ3 domain	protein-coding
159780	chr3	16313171	16313330	+	0	NA	intron (NM_001352982, intron 10 of 10)	AluJo|SINE|Alu	48038	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
230611	chr9	128623671	128623830	+	0	NA	intron (NM_001375310, intron 45 of 57)	AluSz6|SINE|Alu	33100	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
38959	chr11	47538821	47539080	+	0	NA	intron (NM_001376458, intron 1 of 13)	CR1-16_AMi|LINE|CR1	14182	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
156583	chr22	41525851	41526030	+	0	NA	3' UTR (NM_001018050, exon 6 of 6)	3' UTR (NM_001018050, exon 6 of 6)	18530	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
108834	chr18	79070601	79070800	+	0	NA	intron (NM_198531, intron 1 of 29)	L1MDb|LINE|L1	1306	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
47933	chr12	6820601	6820800	+	0	NA	TTS (NM_000616)	TTS (NM_000616)	-1121	NM_014449	27239		NM_014449	ENSG00000250510	GPR162	A-2|GRCA	G protein-coupled receptor 162	protein-coding
82814	chr16	21483401	21483850	+	0	NA	intron (NR_027155, intron 3 of 28)	intron (NR_027155, intron 3 of 28)	-17901	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
51608	chr12	52871201	52872500	+	0	NA	Intergenic	Intergenic	-22856	NM_173352	196374		NM_173352	ENSG00000170423	KRT78	CK-78|K5B|K78|Kb40	keratin 78	protein-coding
231833	chr9	132588001	132588250	+	0	NA	intron (NM_020064, intron 2 of 2)	intron (NM_020064, intron 2 of 2)	5519	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
188218	chr5	150741101	150741700	+	0	NA	intron (NM_001135643, intron 4 of 13)	AluJo|SINE|Alu	17120	NM_001135644	51164		NM_016221	ENSG00000132912	DCTN4	DYN4|P62	dynactin subunit 4	protein-coding
185902	chr5	132776251	132777900	+	0	NA	intron (NM_001098813, intron 1 of 9)	CpG	164	NM_015146	23176		NM_015146	ENSG00000164402	SEPTIN8	SEP2|SEPT8|Septin-8	septin 8	protein-coding
126827	chr2	30706801	30707430	+	0	NA	Intergenic	Intergenic	100331	NM_144575	92291		NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
147597	chr20	62026001	62026400	+	0	NA	intron (NM_003185, intron 1 of 14)	intron (NM_003185, intron 1 of 14)	-38602	NR_130463	100422838		NR_130463	ENSG00000265306	MIR3195	-	microRNA 3195	ncRNA
9094	chr1	45033501	45033730	+	0	NA	intron (NM_020883, intron 11 of 13)	MIRc|SINE|MIR	21361	NR_158185	7389		NM_000374	ENSG00000126088	UROD	PCT|UPD	uroporphyrinogen decarboxylase	protein-coding
25517	chr10	7271501	7272530	+	0	NA	intron (NM_001029880, intron 7 of 20)	L2c|LINE|L2	-85231	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
137019	chr2	190679921	190680600	+	0	NA	intron (NM_001321315, intron 3 of 5)	L2b|LINE|L2	21102	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
168900	chr3	152325201	152325480	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	15650	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
207017	chr7	38369721	38370350	+	0	NA	intron (NR_040085, intron 3 of 3)	L1MD2|LINE|L1	28458	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
181288	chr5	39547601	39547800	+	0	NA	Intergenic	Intergenic	27269	NR_104632	101926940		NR_104632	ENSG00000271334	LINC02104	-	long intergenic non-protein coding RNA 2104	ncRNA
63672	chr14	21067771	21067930	+	0	NA	intron (NM_001282211, intron 1 of 14)	intron (NM_001282211, intron 1 of 14)	-2454	NM_001278529	55701		NM_018071	ENSG00000165801	ARHGEF40	SOLO	Rho guanine nucleotide exchange factor 40	protein-coding
134066	chr2	131502621	131502880	+	0	NA	intron (NR_026922, intron 8 of 17)	(CA)n|Simple_repeat|Simple_repeat	9937	NR_026922	150776		NR_026922	ENSG00000293311	SMPD4BP	-	sphingomyelin phosphodiesterase 4B, pseudogene	pseudo
153574	chr22	26668201	26668480	+	0	NA	non-coding (NR_003491, exon 5 of 5)	non-coding (NR_003491, exon 5 of 5)	-4503	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
185652	chr5	131548101	131549080	+	0	NA	intron (NM_016340, intron 5 of 27)	intron (NM_016340, intron 5 of 27)	86639	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
124151	chr19	56047251	56047350	+	0	NA	intron (NM_153447, intron 11 of 14)	L1PBa|LINE|L1	-19384	NR_110741	101928886		NR_110741	ENSG00000267522	LINC01864	-	long intergenic non-protein coding RNA 1864	ncRNA
114104	chr19	11125801	11126650	+	0	NA	intron (NM_001195800, intron 13 of 15)	intron (NM_001195800, intron 13 of 15)	12751	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
44368	chr11	102469951	102470500	+	0	NA	intron (NR_135076, intron 1 of 2)	intron (NR_135076, intron 1 of 2)	2970	NR_135076	102723838		NR_135076	ENSG00000255482	LOC102723838	-	uncharacterized LOC102723838	ncRNA
198759	chr6	108618771	108619480	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	58208	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
149781	chr21	34889401	34891600	+	0	NA	intron (NM_001754, intron 3 of 8)	CpG	-1801	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
150925	chr21	44243251	44243350	+	0	NA	Intergenic	MIR|SINE|MIR	-2334	NM_001363770	102723996		NM_001363770	ENSG00000277117	LOC102723996	-	ICOS ligand	protein-coding
185587	chr5	131396021	131396800	+	0	NA	Intergenic	Intergenic	132357	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
26794	chr10	23342201	23342800	+	0	NA	intron (NM_001371909, intron 1 of 15)	intron (NM_001371909, intron 1 of 15)	-1457	NR_155752	105376453		NR_155752	ENSG00000224215	C10orf67-AS1	-	C10orf67 antisense RNA 1	ncRNA
41022	chr11	65438651	65438950	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	-5658	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
162050	chr3	46788471	46788650	+	0	NA	Intergenic	L1HS|LINE|L1	24014	NR_160551	729756		NR_160551		PRSS44P	PRSS44|TESSP-4|TESSP4	serine protease 44, pseudogene	pseudo
112114	chr19	5592251	5592750	+	0	NA	intron (NM_014649, intron 16 of 20)	intron (NM_014649, intron 16 of 20)	-24466	NR_027064								
48338	chr12	9239251	9239350	+	0	NA	promoter-TSS (NR_036466)	promoter-TSS (NR_036466)	251	NR_036262	100422885		NR_036262	ENSG00000283498	MIR1244-2	-	microRNA 1244-2	ncRNA
152194	chr22	20110921	20112050	+	0	NA	TTS (NM_182984)	TTS (NM_182984)	3266	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
76834	chr15	77426621	77427280	+	0	NA	intron (NM_001304505, intron 1 of 9)	intron (NM_001304505, intron 1 of 9)	6062	NM_001304504	10363		NM_018200	ENSG00000140382	HMG20A	HMGX1|HMGXB1	high mobility group 20A	protein-coding
145352	chr20	41145571	41145730	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-7650	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
104438	chr17	81084221	81085000	+	0	NA	intron (NM_001385156, intron 1 of 12)	intron (NM_001385156, intron 1 of 12)	1071	NM_001385156	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
51494	chr12	52099701	52099900	+	0	NA	intron (NR_120440, intron 1 of 1)	SATR1|Satellite|Satellite	6231	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
30304	chr10	75239821	75240080	+	0	NA	Intergenic	Intergenic	-3993	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
17511	chr1	156746471	156747730	+	0	NA	intron (NM_001319186, intron 1 of 5)	intron (NM_001319186, intron 1 of 5)	4193	NM_001319188	3068		NM_004494	ENSG00000143321	HDGF	HMG1L2	heparin binding growth factor	protein-coding
113423	chr19	9770001	9770200	+	0	NA	intron (NM_001353800, intron 1 of 6)	L1MB8|LINE|L1	-1362	NM_001353799	162993		NM_001077624	ENSG00000196605	ZNF846	-	zinc finger protein 846	protein-coding
214266	chr7	148978571	148978730	+	0	NA	Intergenic	MER97c|DNA|hAT-Tip100	-5105	NR_004392	6085		NR_004392	ENSG00000202354	RNY3	HY3|Y3	RNA, Ro60-associated Y3	ncRNA
133471	chr2	119827871	119828450	+	0	NA	intron (NM_002830, intron 2 of 26)	MLT1G3|LTR|ERVL-MaLR	68238	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
8428	chr1	40532751	40533080	+	0	NA	intron (NM_152373, intron 1 of 4)	intron (NM_152373, intron 1 of 4)	1278	NM_152373	127396		NM_152373	ENSG00000117010	ZNF684	-	zinc finger protein 684	protein-coding
217219	chr8	26449041	26450530	+	0	NA	Intergenic	CpG	59372	NM_001330491	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
206411	chr7	32464771	32465030	+	0	NA	Intergenic	L1PA3|LINE|L1	-6406	NR_038454	100130673		NR_038454		LOC100130673	-	phosphoribosyl pyrophosphate synthetase 2 pseudogene	pseudo
149063	chr21	15526951	15527050	+	0	NA	Intergenic	UCON76|Unknown|Unknown	-202934	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
176875	chr4	102629701	102630030	+	0	NA	TTS (NM_005908)	TTS (NM_005908)	-127379	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
161762	chr3	44859801	44860430	+	0	NA	Intergenic	Intergenic	-1773	NR_030290	693149		NR_030290	ENSG00000284498	MIR564	MIRN564|hsa-mir-564	microRNA 564	ncRNA
134107	chr2	133886671	133886900	+	0	NA	Intergenic	Intergenic	-233150	NM_001371457	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
204109	chr7	2232251	2233650	+	0	NA	promoter-TSS (NM_001304523)	promoter-TSS (NM_001304523)	-5	NM_001304524	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
176340	chr4	88281521	88282000	+	0	NA	intron (NM_152542, intron 1 of 6)	intron (NM_152542, intron 1 of 6)	2801	NM_152542	152926		NM_152542	ENSG00000163644	PPM1K	BCKDH|BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07	protein phosphatase, Mg2+/Mn2+ dependent 1K	protein-coding
69344	chr14	93959071	93960300	+	0	NA	intron (NM_001202429, intron 2 of 9)	intron (NM_001202429, intron 2 of 9)	-2638	NM_016150	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
32152	chr10	101350251	101350830	+	0	NA	Intergenic	L1MC4|LINE|L1	-3493	NM_001256856	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
123881	chr19	55295851	55296150	+	0	NA	intron (NM_032430, intron 7 of 18)	intron (NM_032430, intron 7 of 18)	12003	NM_032430	84446		NM_032430	ENSG00000160469	BRSK1	SAD-B|hSAD1	BR serine/threonine kinase 1	protein-coding
136599	chr2	178452671	178452830	+	0	NA	promoter-TSS (NM_001369912)	promoter-TSS (NM_001369912)	406	NM_001353778	494513		NM_001042702	ENSG00000204311	PJVK	DFNB59	pejvakin	protein-coding
31556	chr10	97196001	97196900	+	0	NA	intron (NR_037909, intron 11 of 14)	CpG	-10491	NM_003061	6585		NM_003061	ENSG00000187122	SLIT1	MEGF4|SLIL1|SLIT-1|SLIT3	slit guidance ligand 1	protein-coding
77164	chr15	80033201	80034080	+	0	NA	Intergenic	Intergenic	-25928	NM_001242918	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
220917	chr8	106856501	106856780	+	0	NA	Intergenic	Intergenic	-86396	NM_139166	137735		NM_139166	ENSG00000174429	ABRA	STARS	actin binding Rho activating protein	protein-coding
206597	chr7	35758421	35758780	+	0	NA	intron (NR_120511, intron 3 of 5)	intron (NR_120511, intron 3 of 5)	42025	NR_120512	101928545		NR_120511		SEPTIN7-DT	SEPT7-AS1|SEPTIN7-AS1	SEPTIN7 divergent transcript	ncRNA
93989	chr17	21985371	21985530	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-217545	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
191582	chr6	12018601	12018800	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	6388	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
102365	chr17	75520921	75521380	+	0	NA	intron (NM_207346, intron 6 of 10)	intron (NM_207346, intron 6 of 10)	-4547	NM_001031803	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
67416	chr14	70188201	70188400	+	0	NA	intron (NR_135825, intron 1 of 3)	intron (NR_135825, intron 1 of 3)	651	NM_058240	6547		NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding
125121	chr2	9798821	9800400	+	0	NA	Intergenic	Intergenic	-43832	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
9081	chr1	44985871	44987050	+	0	NA	intron (NM_001166588, intron 1 of 9)	CpG	135	NM_020365	8891		NM_020365	ENSG00000070785	EIF2B3	EIF-2B|EIF2Bgamma|VWM3	eukaryotic translation initiation factor 2B subunit gamma	protein-coding
131336	chr2	96146101	96147830	+	0	NA	Intergenic	Intergenic	-1525	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
226246	chr9	66900471	66901230	+	0	NA	intron (NM_033160, intron 1 of 4)	CpG	125	NM_001317916	26149		NM_033160	ENSG00000274349	ZNF658	-	zinc finger protein 658	protein-coding
146017	chr20	46694601	46694880	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-5296	NM_033550	112858		NM_033550	ENSG00000172315	TP53RK	BUD32|C20orf64|GAMOS4|Nori-2|Nori-2p|PRPK|TPRKB|dJ101A2	TP53 regulating kinase	protein-coding
154388	chr22	35274251	35274700	+	0	NA	intron (NM_001362972, intron 4 of 9)	intron (NM_001362972, intron 4 of 9)	16982	NM_001003681	10042		NM_005487	ENSG00000100281	HMGXB4	HMG2L1|HMGBCG|P53N|THC211630	HMG-box containing 4	protein-coding
111161	chr19	3324371	3324980	+	0	NA	Intergenic	L2b|LINE|L2	-34955	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
86625	chr16	67415821	67417030	+	0	NA	promoter-TSS (NM_001323627)	promoter-TSS (NM_001323627)	52	NM_001323627	29800		NM_013304	ENSG00000159714	ZDHHC1	C16orf1|DHHC-1|HSU90653|ZNF377	zinc finger DHHC-type containing 1	protein-coding
184622	chr5	107254301	107254500	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-243386	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
196647	chr6	44295301	44295880	+	0	NA	intron (NM_182539, intron 1 of 4)	intron (NM_182539, intron 1 of 4)	2108	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
76017	chr15	71801171	71801330	+	0	NA	Intergenic	Intergenic	-9304	NM_014249	10002		NM_014249	ENSG00000278570	NR2E3	ESCS|PNR|RNR|RP37|rd7	nuclear receptor subfamily 2 group E member 3	protein-coding
233255	chr9	137275721	137276300	+	0	NA	Intergenic	Intergenic	-1716	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
143079	chr20	21555901	21556300	+	0	NA	Intergenic	Intergenic	-13924	NR_109880	101929625		NR_109880		LINC01727	IRENA	long intergenic non-protein coding RNA 1727	ncRNA
66213	chr14	61298901	61299580	+	0	NA	Intergenic	Intergenic	-17902	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
55758	chr12	108518771	108519130	+	0	NA	exon (NM_007076, exon 3 of 3)	exon (NM_007076, exon 3 of 3)	3673	NM_007076	11153		NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain protein adenylyltransferase	protein-coding
234735	chrX	21948901	21949300	+	0	NA	intron (NM_004595, intron 1 of 10)	intron (NM_004595, intron 1 of 10)	8391	NM_004595	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
198512	chr6	106516571	106517500	+	0	NA	intron (NM_001371242, intron 3 of 21)	AluJo|SINE|Alu	5180	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
93238	chr17	17856301	17856500	+	0	NA	intron (NM_001082968, intron 12 of 14)	intron (NM_001082968, intron 12 of 14)	-19389	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
52696	chr12	56500871	56501950	+	0	NA	Intergenic	LTR13|LTR|ERVK	-11455	NR_132789	106635541		NR_132789		SNORA105C	-	small nucleolar RNA, H/ACA box 105C	snoRNA
82944	chr16	21860751	21861050	+	0	NA	Intergenic	AluSc5|SINE|Alu	-3144	NM_001384982	440345		NM_001310148	ENSG00000185864	NPIPB4	61E3.4	nuclear pore complex interacting protein family member B4	protein-coding
100063	chr17	58156501	58157820	+	0	NA	non-coding (NR_002307, exon 1 of 1)	non-coding (NR_002307, exon 1 of 1)	201	NR_002307	55545		NR_002307		MSX2P1	HPX5|HSHPX5|MSX2P	msh homeobox 2 pseudogene 1	pseudo
218839	chr8	59531871	59532130	+	0	NA	Intergenic	Intergenic	412790	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
16719	chr1	155243851	155245800	+	0	NA	promoter-TSS (NM_001005742).2	promoter-TSS (NM_001005742).2	-198	NM_001005742	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
117083	chr19	19115851	19116200	+	0	NA	Intergenic	LTR16C|LTR|ERVL	22453	NM_017814	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
237531	chrX	120311071	120311580	+	0	NA	5' UTR (NM_017938, exon 1 of 10)	5' UTR (NM_017938, exon 1 of 10)	136	NM_001104544	55026		NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
50560	chr12	48118851	48119790	+	0	NA	promoter-TSS (NM_000289)	promoter-TSS (NM_000289)	-44	NM_000289	5213		NM_000289	ENSG00000152556	PFKM	ATP-PFK|GSD7|PFK-1|PFK-A|PFK1|PFKA|PFKX|PPP1R122	phosphofructokinase, muscle	protein-coding
53631	chr12	68163371	68164030	+	0	NA	Intergenic	Intergenic	-3960	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
193962	chr6	31691621	31691880	+	0	NA	intron (NR_033488, intron 8 of 19).5	G-rich|Low_complexity|Low_complexity	9341	NR_039789	100616230		NR_039789	ENSG00000266776	MIR4646	mir-4646	microRNA 4646	ncRNA
35095	chr11	632351	632650	+	0	NA	Intergenic	AluYm1|SINE|Alu	-4769	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
74589	chr15	60561601	60561800	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	30826	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
37340	chr11	14887171	14887330	+	0	NA	intron (NM_024514, intron 1 of 4)	intron (NM_024514, intron 1 of 4)	4421	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
155619	chr22	38865251	38865780	+	0	NA	3' UTR (NM_001303494, exon 5 of 5)	3' UTR (NM_001303494, exon 5 of 5)	6701	NM_001303494	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
33666	chr10	119867001	119867350	+	0	NA	intron (NM_001256379, intron 1 of 15)	AluSc8|SINE|Alu	5668	NM_001256378	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
115699	chr19	16205321	16205950	+	0	NA	intron (NM_001130524, intron 2 of 12)	intron (NM_001130524, intron 2 of 12)	7724	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
218765	chr8	58967071	58967430	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	151897	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
34816	chr11	286871	288310	+	0	NA	Intergenic	L2b|LINE|L2	-1536	NM_025092	80162		NM_025092	ENSG00000142102	PGGHG	ATHL1	protein-glucosylgalactosylhydroxylysine glucosidase	protein-coding
22568	chr1	222662071	222662230	+	0	NA	intron (NM_001324062, intron 25 of 28)	intron (NM_001324062, intron 25 of 28)	17847	NM_001300867	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
237816	chrX	129958871	129959500	+	0	NA	Intergenic	MIR3|SINE|MIR	-21794	NM_001184772	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
146384	chr20	49285921	49286500	+	0	NA	intron (NR_003604, intron 4 of 4)	HERVIP10B3-int|LTR|ERV1	5527	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
234869	chrX	25315451	25315550	+	0	NA	Intergenic	L1PA4|LINE|L1	-299535	NM_139058	170302		NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
104867	chr17	81854801	81855600	+	0	NA	exon (NM_000918, exon 4 of 11)	exon (NM_000918, exon 4 of 11)	5335	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
88833	chr16	87489151	87489250	+	0	NA	intron (NM_015144, intron 1 of 12)	intron (NM_015144, intron 1 of 12)	3824	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
58778	chr12	132721051	132721350	+	0	NA	3' UTR (NM_001170543, exon 6 of 6)	3' UTR (NM_001170543, exon 6 of 6)	10358	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
50595	chr12	48652101	48652500	+	0	NA	TTS (NM_017822)	TTS (NM_017822)	2218	NR_002968	677815		NR_002968	ENSG00000221491	SNORA2C	ACA34|MIR1291|SNORA34	small nucleolar RNA, H/ACA box 2C	snoRNA
117389	chr19	19598701	19599980	+	0	NA	non-coding (NR_038198, exon 2 of 8)	non-coding (NR_038198, exon 2 of 8)	19347	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
75433	chr15	65793971	65795030	+	0	NA	Intergenic	Intergenic	-2207	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
22739	chr1	224342471	224342630	+	0	NA	Intergenic	L1MB2|LINE|L1	-12361	NM_206840	4931		NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP like	protein-coding
230367	chr9	128070921	128071250	+	0	NA	intron (NM_001006641, intron 1 of 9)	intron (NM_001006641, intron 1 of 9)	2885	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
100369	chr17	60102521	60103050	+	0	NA	non-coding (NR_027408, exon 1 of 1)	non-coding (NR_027408, exon 1 of 1)	134	NR_027408	653653		NR_027408	ENSG00000293358	LOC653653	-	adaptor related protein complex 1 subunit sigma 2 pseudogene	pseudo
35060	chr11	600821	601080	+	0	NA	intron (NM_001286582, intron 9 of 17)	AluY|SINE|Alu	15000	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
192354	chr6	24527751	24528050	+	0	NA	intron (NM_170740, intron 8 of 10)	intron (NM_170740, intron 8 of 10)	32931	NM_001368954	7915		NM_001080	ENSG00000112294	ALDH5A1	SSADH|SSDH	aldehyde dehydrogenase 5 family member A1	protein-coding
143373	chr20	26309851	26309950	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-100667	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
18244	chr1	161051401	161051600	+	0	NA	exon (NM_001287602, exon 6 of 8)	exon (NM_001287602, exon 6 of 8)	-5523	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
228853	chr9	112318521	112318930	+	0	NA	intron (NM_001375918, intron 1 of 13)	AluSz|SINE|Alu	14301	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
72899	chr15	40339171	40339780	+	0	NA	intron (NM_207380, intron 3 of 10)	intron (NM_207380, intron 3 of 10)	1492	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
236188	chrX	65666101	65666300	+	0	NA	Intergenic	AluSz|SINE|Alu	-1454	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
84203	chr16	29865871	29866230	+	0	NA	intron (NR_015396, intron 5 of 5)	FRAM|SINE|Alu	2216	NR_015396	440356		NR_015396	ENSG00000293487	CDIPTOSP	CDIPT-AS1|lnc-CTHCC	CDIP transferase opposite strand, pseudogene	ncRNA
65547	chr14	51928751	51929250	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-10429	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
229776	chr9	125228721	125229280	+	0	NA	intron (NM_001174153, intron 6 of 7)	AluSx|SINE|Alu	12343	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
112636	chr19	6793101	6793550	+	0	NA	intron (NM_005428, intron 1 of 26)	AluY|SINE|Alu	20617	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
152929	chr22	22793371	22793530	+	0	NA	Intergenic	AluY|SINE|Alu	-29326	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
49563	chr12	26866901	26867400	+	0	NA	Intergenic	Intergenic	-33956	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
212130	chr7	116250021	116250280	+	0	NA	intron (NM_015641, intron 3 of 6)	intron (NM_015641, intron 3 of 6)	27197	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
238236	chrX	141118051	141118150	+	0	NA	promoter-TSS (NR_104080).11	promoter-TSS (NR_104080).11	36	NR_004394	26827		NR_004394	ENSG00000206625	RNU6-1	RNU6|RNU6A|U6|U6-1	RNA, U6 small nuclear 1	snRNA
91168	chr17	3793571	3793930	+	0	NA	intron (NM_002208, intron 1 of 30)	AluSc8|SINE|Alu	7438	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
146230	chr20	48811271	48811630	+	0	NA	intron (NM_020820, intron 1 of 39)	L2b|LINE|L2	16549	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
58941	chr13	19772221	19772580	+	0	NA	non-coding (NR_003272, exon 2 of 8)	non-coding (NR_003272, exon 2 of 8)	10545	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
91400	chr17	4640551	4641000	+	0	NA	intron (NM_001140, intron 1 of 13)	CpG-10546	903	NM_001140	246		NM_001140	ENSG00000161905	ALOX15	12-LOX|15-LOX|15-LOX-1|LOG15	arachidonate 15-lipoxygenase	protein-coding
10267	chr1	64545101	64545500	+	0	NA	intron (NM_001293274, intron 1 of 25)	L1ME3A|LINE|L1	-34547	NR_039957	100616338		NR_039957	ENSG00000264470	MIR4794	-	microRNA 4794	ncRNA
121555	chr19	47255001	47255600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1225	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
70448	chr14	102050821	102051330	+	0	NA	3' UTR (NM_001376, exon 78 of 78)	3' UTR (NM_001376, exon 78 of 78)	35969	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
149369	chr21	29372301	29372700	+	0	NA	promoter-TSS (NR_046564)	promoter-TSS (NR_046564)	-1	NR_046564	100874322		NR_046564		BACH1-IT2	-	BACH1 intronic transcript 2	ncRNA
156231	chr22	40382071	40382430	+	0	NA	intron (NM_001350047, intron 1 of 20)	MLT1G3|LTR|ERVL-MaLR	11656	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
186061	chr5	134079551	134080850	+	0	NA	Intergenic	Intergenic	-34481	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
97545	chr17	44068901	44069430	+	0	NA	Intergenic	AluY|SINE|Alu	-1508	NM_001384168	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
155787	chr22	39292651	39293550	+	0	NA	Intergenic	AluSx4|SINE|Alu	20811	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
185806	chr5	132432601	132432800	+	0	NA	intron (NR_161242, intron 2 of 3)	AluSz|SINE|Alu	21771	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
86272	chr16	58506321	58506580	+	0	NA	exon (NM_020465, exon 8 of 16)	exon (NM_020465, exon 8 of 16)	6307	NM_001378344	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
183145	chr5	75044501	75044900	+	0	NA	intron (NM_001366737, intron 3 of 3)	intron (NM_001366737, intron 3 of 3)	7858	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
91861	chr17	7229101	7229300	+	0	NA	exon (NM_004422, exon 8 of 15)	exon (NM_004422, exon 8 of 15)	5317	NM_004422	1856		NM_004422	ENSG00000004975	DVL2	-	dishevelled segment polarity protein 2	protein-coding
95869	chr17	38849871	38850130	+	0	NA	3' UTR (NM_000978, exon 5 of 5)	3' UTR (NM_000978, exon 5 of 5)	1658	NR_145761	109617002		NR_145761	ENSG00000252699	SNORA21B	-	small nucleolar RNA, H/ACA box 21B	snoRNA
59007	chr13	20157301	20158000	+	0	NA	intron (NM_021954, intron 1 of 1)	intron (NM_021954, intron 1 of 1)	3402	NM_021954	2700		NM_021954	ENSG00000121743	GJA3	CTRCT14|CX46|CZP3	gap junction protein alpha 3	protein-coding
214298	chr7	149127401	149128750	+	0	NA	intron (NM_020781, intron 1 of 6)	MER4D1|LTR|ERV1	1667	NM_020781	57541		NM_020781	ENSG00000197024	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding
173530	chr4	10002151	10002450	+	0	NA	intron (NM_020041, intron 2 of 11)	MIRc|SINE|MIR	19197	NM_020041	56606		NM_020041	ENSG00000109667	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 member 9	protein-coding
230605	chr9	128605571	128605930	+	0	NA	intron (NM_001375310, intron 31 of 57)	AluSq|SINE|Alu	51100	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
179147	chr4	169619541	169621090	+	0	NA	promoter-TSS (NM_001243372)	promoter-TSS (NM_001243372)	-263	NM_001829	1182		NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3|NEDHYBA|NEDSBA	chloride voltage-gated channel 3	protein-coding
139974	chr2	230889001	230889200	+	0	NA	intron (NR_038238, intron 1 of 3)	THE1D|LTR|ERVL-MaLR	2554	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
70626	chr14	102817471	102817830	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	40171	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
121632	chr19	47447271	47448580	+	0	NA	exon (NM_015063, exon 4 of 10)	exon (NM_015063, exon 4 of 10)	23968	NM_015063	6543		NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
73908	chr15	50751271	50751930	+	0	NA	intron (NM_032802, intron 1 of 14)	L1MC1|LINE|L1	14106	NM_032802	84888		NM_032802	ENSG00000138600	SPPL2A	IMD86|IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
66335	chr14	61434401	61434830	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	113172	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
83533	chr16	27547771	27548530	+	0	NA	intron (NM_001520, intron 1 of 36)	intron (NM_001520, intron 1 of 36)	1763	NM_001520	2975		NM_001520	ENSG00000077235	GTF3C1	TFIIIC|TFIIIC220|TFIIICalpha	general transcription factor IIIC subunit 1	protein-coding
223217	chr8	143594151	143594250	+	0	NA	intron (NM_001130055, intron 1 of 8)	intron (NM_001130055, intron 1 of 8)	3213	NM_001130057	1936		NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
143046	chr20	21315371	21315530	+	0	NA	intron (NM_001317960, intron 1 of 29)	L1MB8|LINE|L1	11952	NM_001317960	22803		NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
20884	chr1	202142101	202142300	+	0	NA	intron (NM_001256129, intron 1 of 5)	intron (NM_001256129, intron 1 of 5)	2537	NM_138795	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
193616	chr6	30740951	30741350	+	0	NA	intron (NM_001318875, intron 4 of 11).2	intron (NM_001318875, intron 4 of 11).2	1537	NM_005803	10211		NM_005803	ENSG00000137312	FLOT1	-	flotillin 1	protein-coding
226279	chr9	68313821	68314080	+	0	NA	Intergenic	SATR2|Satellite|Satellite	11083	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
208948	chr7	74178101	74178380	+	0	NA	intron (NM_022170, intron 1 of 6)	intron (NM_022170, intron 1 of 6)	3884	NM_022170	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
187194	chr5	140661671	140662200	+	0	NA	exon (NM_006083, exon 18 of 20)	exon (NM_006083, exon 18 of 20)	-2864	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
230955	chr9	129427221	129427480	+	0	NA	Intergenic	Intergenic	-61310	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
86752	chr16	67651721	67651980	+	0	NA	intron (NM_001317026, intron 26 of 37)	G-rich|Low_complexity|Low_complexity	6706	NM_001013838	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
47439	chr12	3455271	3455430	+	0	NA	intron (NM_001256536, intron 1 of 9)	intron (NM_001256536, intron 1 of 9)	-35853	NM_019854	56341		NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
38453	chr11	45370951	45371850	+	0	NA	promoter-TSS (NR_122071)	promoter-TSS (NR_122071)	3	NR_122071	399886		NR_122071	ENSG00000255267	LINC02687	-	long intergenic non-protein coding RNA 2687	ncRNA
209272	chr7	75914421	75916130	+	0	NA	promoter-TSS (NR_039795)	promoter-TSS (NR_039795)	78	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
129623	chr2	70123821	70125880	+	0	NA	intron (NR_024444, intron 1 of 1)	AluYc|SINE|Alu	466	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
41392	chr11	66007921	66008180	+	0	NA	Intergenic	Intergenic	-3958	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
58258	chr12	128813871	128814230	+	0	NA	intron (NM_145648, intron 2 of 7)	intron (NM_145648, intron 2 of 7)	9908	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
141393	chr2	240831901	240833730	+	0	NA	Intergenic	Intergenic	-11412	NM_001379653	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
79845	chr16	1450221	1451230	+	0	NA	intron (NM_001114331, intron 15 of 23)	intron (NM_001114331, intron 15 of 23)	-6236	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
104361	chr17	80998621	80999430	+	0	NA	intron (NM_024591, intron 7 of 7)	intron (NM_024591, intron 7 of 7)	7184	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
153225	chr22	23961921	23962180	+	0	NA	promoter-TSS (NR_126445)	promoter-TSS (NR_126445)	549	NM_001355	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
1399	chr1	2548301	2550000	+	0	NA	TTS (NR_037844)	TTS (NR_037844)	-7215	NM_001297605	8764		NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
95671	chr17	38301971	38302680	+	0	NA	intron (NM_032351, intron 3 of 7)	AluSx|SINE|Alu	5157	NM_032351	84311		NM_032351	ENSG00000278845	MRPL45	L45mt|MRP-L45|Mba1|mL45	mitochondrial ribosomal protein L45	protein-coding
91679	chr17	5582301	5583030	+	0	NA	intron (NM_014922, intron 2 of 15)	intron (NM_014922, intron 2 of 15)	1844	NM_001033053	22861		NM_014922	ENSG00000091592	NLRP1	AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|JRRP|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
13417	chr1	114033271	114033430	+	0	NA	Intergenic	Intergenic	53876	NM_020190	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
232731	chr9	136622421	136622680	+	0	NA	Intergenic	Intergenic	-5369	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
184400	chr5	98907971	98908380	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-20387	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
7801	chr1	36253401	36254130	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluJr|SINE|Alu	29322	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
129724	chr2	70900151	70900730	+	0	NA	promoter-TSS (NM_012476)	promoter-TSS (NM_012476)	-136	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
211309	chr7	103349571	103349950	+	0	NA	intron (NM_002803, intron 1 of 11)	intron (NM_002803, intron 1 of 11)	2117	NM_002803	5701		NM_002803	ENSG00000161057	PSMC2	MSS1|Nbla10058|RPT1|S7	proteasome 26S subunit, ATPase 2	protein-coding
108198	chr18	63119671	63119930	+	0	NA	Intergenic	Intergenic	199969	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
81364	chr16	4844071	4844900	+	0	NA	intron (NR_136695, intron 3 of 17)	intron (NR_136695, intron 3 of 17)	2803	NM_032569	84656		NM_032569	ENSG00000140632	GLYR1	BM045|HIBDL|N-PAC|NP60|NPAC|hNDF	glyoxylate reductase 1 homolog	protein-coding
36874	chr11	10507901	10508390	+	0	NA	TTS (NM_000480)	TTS (NM_000480)	181	NR_039705	100616263		NR_039705	ENSG00000283813	MIR4485	mir-4485	microRNA 4485	ncRNA
230861	chr9	129138471	129139600	+	0	NA	intron (NM_001271832, intron 7 of 8)	intron (NM_001271832, intron 7 of 8)	27347	NM_001193397	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
123014	chr19	51107551	51110250	+	0	NA	promoter-TSS (NM_145232)	promoter-TSS (NM_145232)	-491	NM_145232	90353		NM_145232	ENSG00000142544	CTU1	ATPBD3|NCS6	cytosolic thiouridylase subunit 1	protein-coding
138806	chr2	216151551	216151900	+	0	NA	intron (NM_021141, intron 14 of 20)	MIR|SINE|MIR	42377	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
147405	chr20	58839401	58840230	+	0	NA	promoter-TSS (NM_016592)	promoter-TSS (NM_016592)	67	NM_016592	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
88180	chr16	81718811	81720100	+	0	NA	Intergenic	(TCCCG)n|Simple_repeat|Simple_repeat	54101	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
15744	chr1	151131071	151132100	+	0	NA	TTS (NM_030913)	TTS (NM_030913)	15046	NM_030913	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
25637	chr10	8137101	8138300	+	0	NA	Intergenic	Intergenic	83012	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
84726	chr16	30922201	30924830	+	0	NA	promoter-TSS (NR_024348)	promoter-TSS (NR_024348)	-57	NM_001382779	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
138587	chr2	207973221	207973500	+	0	NA	intron (NM_001080475, intron 3 of 7)	intron (NM_001080475, intron 3 of 7)	52167	NM_001080475	389072		NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
123387	chr19	53917451	53917950	+	0	NA	intron (NM_001384801, intron 4 of 4)	intron (NM_001384801, intron 4 of 4)	8422	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
208589	chr7	72935321	72935780	+	0	NA	intron (NM_172020, intron 6 of 13)	AluSx|SINE|Alu	19213	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
115970	chr19	17001451	17002550	+	0	NA	intron (NM_015692, intron 9 of 41)	intron (NM_015692, intron 9 of 41)	24810	NR_165644	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
141099	chr2	238423251	238423900	+	0	NA	Intergenic	Intergenic	-3352	NM_001040445	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
42558	chr11	71800201	71801130	+	0	NA	intron (NR_073388, intron 3 of 3)	intron (NR_073388, intron 3 of 3)	13194	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
215018	chr7	152395201	152395600	+	0	NA	intron (NM_170606, intron 1 of 58)	AluJb|SINE|Alu	40603	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
108166	chr18	62846301	62846550	+	0	NA	intron (NM_194449, intron 3 of 16)	L2c|LINE|L2	130884	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
131517	chr2	96553251	96553550	+	0	NA	TTS (NM_001319085)	TTS (NM_001319085)	15521	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
201519	chr6	149094151	149094480	+	0	NA	Intergenic	Intergenic	-61654	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
55278	chr12	102957521	102957880	+	0	NA	promoter-TSS (NM_004316)	promoter-TSS (NM_004316)	26	NM_004316	429		NM_004316	ENSG00000139352	ASCL1	ASH1|HASH1|MASH1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding
208660	chr7	73151751	73152050	+	0	NA	intron (NM_001382494, intron 1 of 8)	MER112|DNA|hAT-Charlie	-3024	NR_003580	100093631		NR_003580	ENSG00000293241	GTF2IP4	GTF2I	general transcription factor IIi pseudogene 4	pseudo
200101	chr6	130193901	130194100	+	0	NA	intron (NM_001258275, intron 7 of 13)	HERVH-int|LTR|ERV1	21885	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
223030	chr8	143337621	143338080	+	0	NA	intron (NM_001258447, intron 1 of 13)	LTR2|LTR|ERV1	-2970	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
213350	chr7	135569021	135569350	+	0	NA	intron (NM_001329434, intron 1 of 42)	AluSx|SINE|Alu	11268	NM_015135	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
214683	chr7	150971001	150971430	+	0	NA	intron (NM_172056, intron 2 of 8)	intron (NM_172056, intron 2 of 8)	7099	NM_172056	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
132052	chr2	101133851	101134150	+	0	NA	intron (NM_001330348, intron 1 of 19)	THE1D|LTR|ERVL-MaLR	17382	NM_001330348	11138		NM_007063	ENSG00000204634	TBC1D8	AD3|GRAMD8|HBLP1|TBC1D8A|VRP	TBC1 domain family member 8	protein-coding
98651	chr17	47825451	47825750	+	0	NA	intron (NR_037575, intron 4 of 4)	AluJb|SINE|Alu	-3806	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
211003	chr7	102291401	102291880	+	0	NA	intron (NM_001359229, intron 1 of 8)	intron (NM_001359229, intron 1 of 8)	-1463	NR_036245	100422858		NR_036245	ENSG00000264675	MIR4285	-	microRNA 4285	ncRNA
64084	chr14	22586001	22586750	+	0	NA	intron (NM_001344, intron 1 of 2)	AluSp|SINE|Alu	2849	NM_001344	1603		NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
189819	chr5	177005421	177006200	+	0	NA	intron (NM_001199297, intron 1 of 15)	MIR|SINE|MIR	632	NM_016290	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
95520	chr17	36547451	36547750	+	0	NA	intron (NM_024835, intron 2 of 13)	intron (NM_024835, intron 2 of 13)	2681	NM_024835	79893		NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
141142	chr2	239224151	239224650	+	0	NA	intron (NM_006037, intron 3 of 26)	L2a|LINE|L2	-28943	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
29553	chr10	71350721	71351250	+	0	NA	intron (NM_001363518, intron 3 of 5)	MIR|SINE|MIR	31726	NM_018344	55315		NM_018344	ENSG00000198246	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 member 3	protein-coding
131491	chr2	96525851	96525950	+	0	NA	Intergenic	Intergenic	6406	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
35325	chr11	1038921	1039180	+	0	NA	Intergenic	Intergenic	-2332	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
190262	chr5	179142951	179143050	+	0	NA	intron (NM_014244, intron 10 of 21)	L1MB7|LINE|L1	82627	NM_014594	30832		NM_014594	ENSG00000177932	ZNF354C	KID3	zinc finger protein 354C	protein-coding
102607	chr17	75938821	75939400	+	0	NA	promoter-TSS (NM_001319193)	promoter-TSS (NM_001319193)	-878	NM_001319193	85302		NM_001080542	ENSG00000188878	FBF1	Alb|FBF-1	Fas binding factor 1	protein-coding
229749	chr9	125172571	125173000	+	0	NA	intron (NM_001123369, intron 1 of 5)	L1MD2|LINE|L1	17018	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
81928	chr16	11769521	11770000	+	0	NA	intron (NM_014153, intron 10 of 22)	intron (NM_014153, intron 10 of 22)	-26903	NR_136671	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
50829	chr12	49102871	49103030	+	0	NA	exon (NM_001352165, exon 8 of 17)	exon (NM_001352165, exon 8 of 17)	7950	NM_001352166	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
232609	chr9	136434321	136434930	+	0	NA	intron (NM_001318502, intron 2 of 9)	intron (NM_001318502, intron 2 of 9)	5220	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
193134	chr6	29516151	29516550	+	0	NA	Intergenic	L1M5|LINE|L1	-13056	NR_037180	100507362		NR_037179	ENSG00000224582	LINC01015	-	long intergenic non-protein coding RNA 1015	ncRNA
139038	chr2	218570951	218571580	+	0	NA	intron (NR_073390, intron 1 of 6)	intron (NR_073390, intron 1 of 6)	2426	NR_073390	9125		NM_005444	ENSG00000144580	CNOT9	CAF40|CT129|RCD-1|RCD1|RQCD1	CCR4-NOT transcription complex subunit 9	protein-coding
118209	chr19	35151051	35151350	+	0	NA	intron (NM_022006, intron 2 of 5)	intron (NM_022006, intron 2 of 5)	-3535	NM_001320912	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
216486	chr8	20123751	20123850	+	0	NA	Intergenic	Intergenic	59336	NM_001142324	6570		NM_003053	ENSG00000036565	SLC18A1	CGAT|VAT1|VMAT1	solute carrier family 18 member A1	protein-coding
159606	chr3	15241171	15241630	+	0	NA	intron (NR_164767, intron 15 of 20)	intron (NR_164767, intron 15 of 20)	-12784	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
35473	chr11	1486321	1486580	+	0	NA	exon (NM_001172223, exon 1 of 5)	exon (NM_001172223, exon 1 of 5)	329	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
94508	chr17	29392321	29392580	+	0	NA	intron (NM_025142, intron 1 of 17)	intron (NM_025142, intron 1 of 17)	1525	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
72525	chr15	34226501	34226700	+	0	NA	intron (NR_147140, intron 2 of 3)	AluSq2|SINE|Alu	1584	NM_001351373	51234		NM_016454	ENSG00000128463	EMC4	PIG17|TMEM85	ER membrane protein complex subunit 4	protein-coding
456	chr1	1136001	1136480	+	0	NA	promoter-TSS (NR_038869)	promoter-TSS (NR_038869)	-777	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
232959	chr9	136954721	136955250	+	0	NA	intron (NM_178536, intron 5 of 5)	intron (NM_178536, intron 5 of 5)	2712	NM_178536	286256		NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
102957	chr17	76699571	76699730	+	0	NA	intron (NM_001008528, intron 1 of 3)	intron (NM_001008528, intron 1 of 3)	9947	NR_130926	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
214784	chr7	151119571	151119730	+	0	NA	intron (NM_001308304, intron 7 of 7)	intron (NM_001308304, intron 7 of 7)	5012	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
162444	chr3	48446071	48447680	+	0	NA	promoter-TSS (NR_153405)	promoter-TSS (NR_153405)	96	NR_153405	111822955		NR_153405	ENSG00000164053	ATRIP-TREX1	-	ATRIP-TREX1 readthrough	ncRNA
206742	chr7	36658721	36658980	+	0	NA	intron (NM_001177506, intron 4 of 21)	MIRb|SINE|MIR	-58730	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
187929	chr5	148860501	148860700	+	0	NA	Intergenic	Intergenic	33989	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
60984	chr13	46694071	46694230	+	0	NA	intron (NM_015116, intron 8 of 18)	intron (NM_015116, intron 8 of 18)	103011	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
159956	chr3	17258801	17259050	+	0	NA	intron (NM_001349090, intron 15 of 21)	intron (NM_001349090, intron 15 of 21)	325729	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
131760	chr2	98468421	98469250	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	22825	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
207152	chr7	43583601	43584830	+	0	NA	intron (NM_004760, intron 1 of 6)	intron (NM_004760, intron 1 of 6)	1107	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
45692	chr11	119059051	119059700	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-2170	NM_001130991	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
9615	chr1	52369851	52370150	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-3795	NM_032449	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
191264	chr6	6008641	6009550	+	0	NA	Intergenic	CpG	-1490	NM_001278710	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
148374	chr20	63886521	63886980	+	0	NA	intron (NM_199360, intron 6 of 8)	AluSc5|SINE|Alu	-8376	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
91902	chr17	7297751	7298350	+	0	NA	Intergenic	AluY|SINE|Alu	-3411	NM_015982	51087		NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y-box binding protein 2	protein-coding
234906	chrX	31136171	31136330	+	0	NA	intron (NM_000109, intron 76 of 78)	intron (NM_000109, intron 76 of 78)	-64209	NM_031894	53940		NM_031894	ENSG00000132446	FTHL17	CT38	ferritin heavy chain like 17	protein-coding
13650	chr1	116516661	116517480	+	0	NA	intron (NR_026665, intron 5 of 5)	intron (NR_026665, intron 5 of 5)	-38244	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
116225	chr19	17521521	17521780	+	0	NA	TTS (NM_012088)	TTS (NM_012088)	-1651	NM_001098524	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
69383	chr14	94035051	94035150	+	0	NA	intron (NM_023112, intron 1 of 5)	intron (NM_023112, intron 1 of 5)	8760	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
213801	chr7	140923501	140925450	+	0	NA	promoter-TSS (NM_001378472)	promoter-TSS (NM_001378472)	-207	NM_001378473	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
223854	chr9	98351	98850	+	0	NA	Intergenic	Intergenic	19817	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
24708	chr1	247336001	247336200	+	0	NA	intron (NR_168399, intron 1 of 2)	MLT2D|LTR|ERVL	4046	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
99753	chr17	50950071	50950830	+	0	NA	Intergenic	Intergenic	-82472	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
220610	chr8	100920901	100921100	+	0	NA	intron (NM_001135702, intron 5 of 5)	intron (NM_001135702, intron 5 of 5)	29571	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
91371	chr17	4550601	4550800	+	0	NA	intron (NM_014520, intron 8 of 25)	MIRb|SINE|MIR	4684	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
95379	chr17	35882871	35883030	+	0	NA	Intergenic	AluY|SINE|Alu	-2590	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
97810	chr17	44829001	44830980	+	0	NA	intron (NM_001080383, intron 1 of 2)	CpG	297	NM_005497	10052		NM_005497	ENSG00000182963	GJC1	CX45|GJA7	gap junction protein gamma 1	protein-coding
20419	chr1	198203751	198204050	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	46902	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
94346	chr17	28891521	28892350	+	0	NA	intron (NM_004475, intron 1 of 10)	intron (NM_004475, intron 1 of 10)	5798	NM_004475	2319		NM_004475	ENSG00000132589	FLOT2	ECS-1|ECS1|ESA|ESA1|M17S1	flotillin 2	protein-coding
120116	chr19	42187051	42187350	+	0	NA	Intergenic	AluSx1|SINE|Alu	30477	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
31272	chr10	92289051	92289450	+	0	NA	intron (NM_014912, intron 1 of 9)	AluSx|SINE|Alu	1828	NM_014912	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
84522	chr16	30518421	30519180	+	0	NA	intron (NM_002209, intron 29 of 30)	intron (NM_002209, intron 29 of 30)	7766	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
196940	chr6	52537051	52537580	+	0	NA	intron (NM_012288, intron 1 of 10)	intron (NM_012288, intron 1 of 10)	39745	NM_012288	9697		NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
182074	chr5	55981401	55981600	+	0	NA	intron (NR_157112, intron 2 of 17)	AluSx4|SINE|Alu	13463	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
234656	chrX	20136071	20136530	+	0	NA	non-coding (NR_023358, exon 1 of 1)	non-coding (NR_023358, exon 1 of 1)	113	NR_023358	100158262		NR_023358		SCARNA9L	-	small Cajal body-specific RNA 9 like	ncRNA
238178	chrX	136875101	136875300	+	0	NA	intron (NM_001164803, intron 5 of 7)	intron (NM_001164803, intron 5 of 7)	4071	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
227003	chr9	83688901	83689580	+	0	NA	intron (NM_053067, intron 1 of 9)	L1MB8|LINE|L1	-18595	NR_135839	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
167109	chr3	127626871	127627030	+	0	NA	Intergenic	AluJr|SINE|Alu	-2235	NM_015720	50512		NM_015720	ENSG00000114631	PODXL2	EG|PODLX2	podocalyxin like 2	protein-coding
134150	chr2	134216521	134216900	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-37362	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
85664	chr16	56278251	56278350	+	0	NA	intron (NM_020988, intron 3 of 8)	intron (NM_020988, intron 3 of 8)	32780	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
78298	chr15	90901921	90904400	+	0	NA	promoter-TSS (NM_006122)	promoter-TSS (NM_006122)	-142	NM_006122	4122		NM_006122	ENSG00000196547	MAN2A2	MANA2X|alpha-MIIx	mannosidase alpha class 2A member 2	protein-coding
194493	chr6	33261971	33262130	+	0	NA	intron (NM_001289175, intron 17 of 19).6	AluSp|SINE|Alu	9826	NM_022553	6293		NM_022553	ENSG00000223501	VPS52	ARE1|SAC2|SACM2L|dJ1033B10.5	VPS52 subunit of GARP complex	protein-coding
126094	chr2	25849221	25849680	+	0	NA	intron (NM_018263, intron 1 of 11)	AluSz6|SINE|Alu	-18549	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
15056	chr1	148426551	148427180	+	0	NA	intron (NR_168370, intron 5 of 7)	intron (NR_168370, intron 5 of 7)	12051	NR_168365	100132057		NR_033189	ENSG00000291232	PDE4DIPP6	-	PDE4DIP pseudogene 6	pseudo
195095	chr6	35595771	35596130	+	0	NA	intron (NM_001145775, intron 7 of 11)	intron (NM_001145775, intron 7 of 11)	68839	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
53137	chr12	57845001	57846200	+	0	NA	intron (NM_005730, intron 1 of 7)	CpG	1129	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
218449	chr8	47997251	47997800	+	0	NA	Intergenic	HERVFH21-int|LTR|ERV1	-10906	NM_003350	7336		NM_003350	ENSG00000169139	UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin conjugating enzyme E2 V2	protein-coding
109144	chr18	80246271	80246790	+	0	NA	intron (NM_032510, intron 1 of 2)	CpG	984	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
82983	chr16	21985871	21986230	+	0	NA	intron (NM_001370530, intron 4 of 4)	intron (NM_001370530, intron 4 of 4)	15066	NM_001370530	255762		NM_173806	ENSG00000155714	PDZD9	C16orf65	PDZ domain containing 9	protein-coding
47087	chr12	630551	631450	+	0	NA	intron (NR_122124, intron 1 of 4)	intron (NR_122124, intron 1 of 4)	109	NR_122124	100049716		NR_122124	ENSG00000177406	NINJ2-AS1	-	NINJ2 antisense RNA 1	ncRNA
37019	chr11	12087291	12088650	+	0	NA	Intergenic	AluJo|SINE|Alu	-22606	NM_001282668	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
236453	chrX	71558501	71558700	+	0	NA	intron (NM_181672, intron 12 of 21)	AluSz6|SINE|Alu	-19424	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
209994	chr7	92863951	92864450	+	0	NA	intron (NR_110087, intron 2 of 2)	AluSq2|SINE|Alu	-27627	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
21906	chr1	207821771	207822000	+	0	NA	non-coding (NR_026817, exon 1 of 1)	non-coding (NR_026817, exon 1 of 1)	818	NR_135299	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
63403	chr13	114075401	114075980	+	0	NA	intron (NM_001320821, intron 1 of 25).2	CpG	2265	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
226297	chr9	68368171	68368330	+	0	NA	intron (NM_021965, intron 1 of 10)	intron (NM_021965, intron 1 of 10)	-10384	NR_121191	572558		NR_015423	ENSG00000224958	PGM5-AS1	FAM233A	PGM5 antisense RNA 1	ncRNA
110759	chr19	2376301	2376630	+	0	NA	Intergenic	AluSz|SINE|Alu	-8800	NM_182973	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
1483	chr1	2748201	2748500	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	52518	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
30122	chr10	74012451	74013230	+	0	NA	intron (NM_014000, intron 1 of 21)	L2b|LINE|L2	14724	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
230348	chr9	128025751	128027730	+	0	NA	Intergenic	Intergenic	40580	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
160286	chr3	27312101	27312380	+	0	NA	intron (NM_199347, intron 8 of 24)	intron (NM_199347, intron 8 of 24)	57143	NM_199347	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
24342	chr1	239723701	239723900	+	0	NA	intron (NM_001375983, intron 5 of 6)	intron (NM_001375983, intron 5 of 6)	-4681	NR_103776	100506915		NR_103776	ENSG00000233355	CHRM3-AS2	-	CHRM3 antisense RNA 2	ncRNA
196696	chr6	44923271	44924080	+	0	NA	intron (NM_001350324, intron 10 of 11)	intron (NM_001350324, intron 10 of 11)	274095	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
10494	chr1	66411301	66411880	+	0	NA	Intergenic	L1PA7|LINE|L1	57055	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
46477	chr11	128310201	128310600	+	0	NA	Intergenic	Intergenic	101634	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
104848	chr17	81841901	81842100	+	0	NA	Intergenic	Intergenic	-6950	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
208355	chr7	66562301	66562500	+	0	NA	intron (NR_111978, intron 3 of 4)	AluSx|SINE|Alu	30007	NR_111978	493754		NR_002933	ENSG00000291136	RABGEF1P1	GS1-124K5.11	RABGEF1 pseudogene 1	pseudo
162007	chr3	46406801	46407930	+	0	NA	promoter-TSS (NR_125406)	promoter-TSS (NR_125406)	106	NM_003965	9034		NM_003965	ENSG00000121797	CCRL2	ACKR5|CKRX|CRAM|CRAM-A|CRAM-B|HCR	C-C motif chemokine receptor like 2	protein-coding
179072	chr4	166570271	166570500	+	0	NA	Intergenic	L1HS|LINE|L1	664041	NM_001204353	50859		NM_016950	ENSG00000196104	SPOCK3	HSAJ1454|TES-3|TICN3	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	protein-coding
185969	chr5	133105951	133106250	+	0	NA	3' UTR (NM_002154, exon 19 of 19)	3' UTR (NM_002154, exon 19 of 19)	54087	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
166322	chr3	112776001	112776280	+	0	NA	Intergenic	Intergenic	-26338	NR_149027	100129297		NR_149026		CD200R1L-AS1	-	CD200R1L antisense RNA 1	ncRNA
58035	chr12	124450971	124452000	+	0	NA	intron (NM_001077261, intron 8 of 47)	MIR|SINE|MIR	-114243	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
25720	chr10	9011401	9011800	+	0	NA	Intergenic	Intergenic	113611	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
206546	chr7	35537021	35537880	+	0	NA	Intergenic	CpG	157685	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
1820	chr1	6241821	6242080	+	0	NA	Intergenic	CpG	-2229	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
213665	chr7	139873871	139874230	+	0	NA	intron (NM_030984, intron 2 of 11)	intron (NM_030984, intron 2 of 11)	44786	NM_001366538	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
140144	chr2	231596501	231596700	+	0	NA	Intergenic	AluSx|SINE|Alu	3736	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
192211	chr6	18115321	18115580	+	0	NA	Intergenic	Intergenic	7227	NM_198586	378884		NM_198586	ENSG00000187566	NHLRC1	EPM2A|EPM2B|MALIN|MELF2|bA204B7.2	NHL repeat containing E3 ubiquitin protein ligase 1	protein-coding
139292	chr2	219515371	219515530	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	968	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
31625	chr10	97382721	97383000	+	0	NA	intron (NM_015179, intron 10 of 33)	AluSz6|SINE|Alu	18480	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
2546	chr1	9730851	9731600	+	0	NA	exon (NM_001009566, exon 18 of 19)	exon (NM_001009566, exon 18 of 19)	39758	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
6930	chr1	31684001	31684350	+	0	NA	exon (NM_001856, exon 32 of 71)	exon (NM_001856, exon 32 of 71)	19842	NM_001856	1307		NM_001856	ENSG00000084636	COL16A1	447AA|FP1572	collagen type XVI alpha 1 chain	protein-coding
201471	chr6	148758251	148758950	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	11570	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
120733	chr19	45368671	45369230	+	0	NA	exon (NM_000400, exon 4 of 23)	exon (NM_000400, exon 4 of 23)	1623	NM_000400	2068		NM_000400	ENSG00000104884	ERCC2	COFS2|EM9|TFIIH|TTD|TTD1|XPD	ERCC excision repair 2, TFIIH core complex helicase subunit	protein-coding
196668	chr6	44389171	44389600	+	0	NA	intron (NM_001253, intron 1 of 15)	intron (NM_001253, intron 1 of 15)	1679	NM_001253	988		NM_001253	ENSG00000096401	CDC5L	CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1	cell division cycle 5 like	protein-coding
112755	chr19	7394151	7394250	+	0	NA	promoter-TSS (NM_015318)	promoter-TSS (NM_015318)	-945	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
189952	chr5	177411751	177411850	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-2236	NM_000505	2161		NM_000505	ENSG00000131187	F12	HAE3|HAEX|HAF	coagulation factor XII	protein-coding
209129	chr7	75072001	75072430	+	0	NA	intron (NM_148842, intron 1 of 10)	AluJo|SINE|Alu	1587	NM_030798	81554		NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
118424	chr19	35782951	35783250	+	0	NA	intron (NM_052948, intron 15 of 20)	L2a|LINE|L2	7536	NM_001366178	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
117632	chr19	23394201	23394800	+	0	NA	intron (NM_003430, intron 1 of 3)	AluSx1|SINE|Alu	971	NM_003430	7644		NM_003430	ENSG00000167232	ZNF91	HPF7|HTF10	zinc finger protein 91	protein-coding
139127	chr2	218991571	218992280	+	0	NA	intron (NM_057094, intron 3 of 4)	intron (NM_057094, intron 3 of 4)	1497	NM_057093	1412		NM_057093	ENSG00000163499	CRYBA2	CTRCT42	crystallin beta A2	protein-coding
51267	chr12	51082911	51084530	+	0	NA	promoter-TSS (NM_030809)	promoter-TSS (NM_030809)	-124	NM_030809	81566		NM_030809	ENSG00000110925	CSRNP2	C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12	cysteine and serine rich nuclear protein 2	protein-coding
43259	chr11	75549371	75549780	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-12678	NM_001207014	871		NM_001235	ENSG00000149257	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46	serpin family H member 1	protein-coding
190036	chr5	177512701	177512900	+	0	NA	exon (NM_001321830, exon 13 of 17)	exon (NM_001321830, exon 13 of 17)	-1700	NM_001375799	79930		NM_024872	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
413	chr1	1075871	1076400	+	0	NA	Intergenic	CpG	-1829	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
172703	chr4	2787191	2787980	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	-5500	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
42445	chr11	69302551	69303450	+	0	NA	Intergenic	L2a|LINE|L2	8845	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
170180	chr3	183692271	183692830	+	0	NA	Intergenic	Intergenic	-5247	NM_001351371	55689		NM_018023	ENSG00000163872	YEATS2	FAME4	YEATS domain containing 2	protein-coding
89578	chr16	89266351	89266450	+	0	NA	Intergenic	Intergenic	-29728	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
61806	chr13	75547921	75548180	+	0	NA	intron (NM_001287394, intron 1 of 2)	ERVL-E-int|LTR|ERVL	1389	NM_001287394	170622		NM_203495	ENSG00000188243	COMMD6	Acrg	COMM domain containing 6	protein-coding
226122	chr9	63010121	63010400	+	0	NA	Intergenic	L1PA7|LINE|L1	-7735	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
189602	chr5	175729571	175730130	+	0	NA	Intergenic	Intergenic	-66683	NM_006650	10814		NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
86556	chr16	67195451	67196130	+	0	NA	exon (NM_001950, exon 7 of 10)	exon (NM_001950, exon 7 of 10)	-3341	NM_024712	79767		NM_024712	ENSG00000102890	ELMO3	CED-12|CED12|ELMO-3	engulfment and cell motility 3	protein-coding
8290	chr1	40038521	40040000	+	0	NA	promoter-TSS (NM_001350479)	promoter-TSS (NM_001350479)	-980	NM_001350479	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
122863	chr19	50488421	50488830	+	0	NA	3' UTR (NM_175063, exon 8 of 8)	3' UTR (NM_175063, exon 8 of 8)	-11777	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
21337	chr1	204556551	204557250	+	0	NA	3' UTR (NM_001278518, exon 7 of 7)	3' UTR (NM_001278518, exon 7 of 7)	40494	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
11560	chr1	91264411	91264550	+	0	NA	intron (NR_165455, intron 30 of 32)	AluYi6|SINE|Alu	140255	NR_165455	164045		NM_001017975	ENSG00000162669	HFM1	MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase	helicase for meiosis 1	protein-coding
6348	chr1	27728851	27729530	+	0	NA	intron (NM_001143914, intron 2 of 7)	intron (NM_001143914, intron 2 of 7)	3229	NM_001143915	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
120634	chr19	45066351	45066450	+	0	NA	intron (NM_001278439, intron 12 of 19)	AluSg|SINE|Alu	-9227	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
232812	chr9	136718171	136718330	+	0	NA	intron (NM_152421, intron 2 of 4)	intron (NM_152421, intron 2 of 4)	5678	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
101255	chr17	66309671	66310130	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	7287	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
141077	chr2	238284451	238284550	+	0	NA	intron (NM_022817, intron 1 of 22)	intron (NM_022817, intron 1 of 22)	4110	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
203336	chr6	170246621	170247080	+	0	NA	Intergenic	Intergenic	15719	NR_002787	154449		NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
18076	chr1	160658371	160658530	+	0	NA	Intergenic	Intergenic	-11139	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
172954	chr4	3532051	3533450	+	0	NA	promoter-TSS (NM_002337)	promoter-TSS (NM_002337)	-328	NM_002337	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
178885	chr4	155787171	155787430	+	0	NA	intron (NM_001291951, intron 5 of 14)	intron (NM_001291951, intron 5 of 14)	28279	NM_001291952	2983		NM_000857	ENSG00000061918	GUCY1B1	GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B3	guanylate cyclase 1 soluble subunit beta 1	protein-coding
2412	chr1	9583321	9583580	+	0	NA	3' UTR (NM_032315, exon 7 of 7)	3' UTR (NM_032315, exon 7 of 7)	-5461	NM_001010866	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
11595	chr1	91572051	91572350	+	0	NA	Intergenic	Intergenic	71092	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
173362	chr4	7856121	7856580	+	0	NA	intron (NM_001371091, intron 4 of 17)	AluY|SINE|Alu	15958	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
3034	chr1	12142201	12142600	+	0	NA	exon (NM_001243, exon 15 of 15)	exon (NM_001243, exon 15 of 15)	-24543	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
68789	chr14	91224771	91225150	+	0	NA	3' UTR (NM_001286472, exon 15 of 15)	3' UTR (NM_001286472, exon 15 of 15)	19744	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
115858	chr19	16544721	16545900	+	0	NA	Intergenic	AluSp|SINE|Alu	-2873	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
44711	chr11	111599101	111600330	+	0	NA	Intergenic	Intergenic	-2734	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
110931	chr19	2815101	2815500	+	0	NA	3' UTR (NM_003249, exon 13 of 13)	3' UTR (NM_003249, exon 13 of 13)	-4568	NM_001102651	115196		NM_152303	ENSG00000172006	ZNF554	-	zinc finger protein 554	protein-coding
105412	chr17	82844901	82845100	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-4978	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
171815	chr4	665101	665300	+	0	NA	intron (NM_001350155, intron 14 of 17)	intron (NM_001350155, intron 14 of 17)	9076	NM_007100	521		NM_007100	ENSG00000169020	ATP5ME	ATP5I|ATP5K	ATP synthase membrane subunit e	protein-coding
182938	chr5	70904021	70904480	+	0	NA	intron (NM_022978, intron 2 of 2).3	AluYc|SINE|Alu	3581	NM_022978	728492		NM_022978	ENSG00000205572	SERF1B	FAM2B|H4F5C|h4F5	small EDRK-rich factor 1B	protein-coding
18283	chr1	161123921	161124380	+	0	NA	exon (NM_001330765, exon 3 of 6)	exon (NM_001330765, exon 3 of 6)	6032	NM_001185094	4817		NM_005600	ENSG00000158793	NIT1	-	nitrilase 1	protein-coding
227309	chr9	89424851	89425400	+	0	NA	intron (NM_001371200, intron 2 of 20)	MER5B|DNA|hAT-Charlie	54765	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
5756	chr1	26481701	26481980	+	0	NA	Intergenic	AluSx1|SINE|Alu	9400	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
172604	chr4	2500221	2500480	+	0	NA	intron (NM_001185009, intron 4 of 8)	intron (NM_001185009, intron 4 of 8)	30897	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
98359	chr17	46349371	46349750	+	0	NA	intron (NM_001039083, intron 3 of 3).5	AluSx3|SINE|Alu	12206	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
163578	chr3	51955051	51955350	+	0	NA	promoter-TSS (NM_080865)	promoter-TSS (NM_080865)	-181	NM_080865	118442		NM_080865	ENSG00000180929	GPR62	GPCR8|KPG_005	G protein-coupled receptor 62	protein-coding
114939	chr19	13976251	13976550	+	0	NA	intron (NM_002918, intron 8 of 20)	intron (NM_002918, intron 8 of 20)	-23008	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
72656	chr15	38521371	38521530	+	0	NA	intron (NM_001128602, intron 3 of 15)	intron (NM_001128602, intron 3 of 15)	43364	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
75798	chr15	68839771	68839930	+	0	NA	Intergenic	Intergenic	-18955	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
154626	chr22	36315601	36316130	+	0	NA	intron (NM_002473, intron 12 of 40)	AluJr|SINE|Alu	-28958	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
98157	chr17	46038301	46038500	+	0	NA	intron (NM_015443, intron 10 of 14).2	intron (NM_015443, intron 10 of 14).2	39150	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
161598	chr3	43152771	43152930	+	0	NA	Intergenic	Intergenic	-46771	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
163986	chr3	53113901	53114800	+	0	NA	intron (NM_052859, intron 6 of 12)	intron (NM_052859, intron 6 of 12)	16085	NM_052859	91869		NM_052859	ENSG00000163933	RFT1	CDG1N	RFT1 homolog	protein-coding
157074	chr22	42605651	42605950	+	0	NA	intron (NM_001278657, intron 1 of 8)	intron (NM_001278657, intron 1 of 8)	9083	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
136577	chr2	177946101	177946300	+	0	NA	intron (NM_016953, intron 2 of 19)	SVA_F|Retroposon|SVA	-23363	NM_001077358	50940		NM_016953	ENSG00000128655	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
206579	chr7	35689401	35689850	+	0	NA	intron (NM_022373, intron 2 of 8)	intron (NM_022373, intron 2 of 8)	5510	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
25838	chr10	11220501	11221200	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	55820	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
133519	chr2	120181701	120182330	+	0	NA	Intergenic	Intergenic	41385	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
128319	chr2	54663151	54663750	+	0	NA	intron (NM_003128, intron 32 of 35)	intron (NM_003128, intron 32 of 35)	-61562	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
203517	chr7	712001	712830	+	0	NA	5' UTR (NM_002735, exon 1 of 11)	5' UTR (NM_002735, exon 1 of 11)	109	NM_002735	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
56500	chr12	116275671	116276500	+	0	NA	intron (NM_015335, intron 1 of 30)	intron (NM_015335, intron 1 of 30)	1608	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
143097	chr20	23348221	23348480	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-2441	NM_013248	29107		NM_013248	ENSG00000132661	NXT1	MTR2|P15	nuclear transport factor 2 like export factor 1	protein-coding
36928	chr11	10823121	10823380	+	0	NA	TTS (NR_120540)	TTS (NR_120540)	13953	NR_120540	101928053		NR_120540	ENSG00000246308	LOC101928053	-	uncharacterized LOC101928053	ncRNA
121389	chr19	46931321	46931580	+	0	NA	intron (NM_004491, intron 2 of 6)	intron (NM_004491, intron 2 of 6)	70453	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
151045	chr21	44652871	44653330	+	0	NA	intron (NM_144991, intron 1 of 11)	AluY|SINE|Alu	1559	NM_198698	386684		NM_198698	ENSG00000212933	KRTAP12-4	KRTAP12.4	keratin associated protein 12-4	protein-coding
179196	chr4	173333581	173335380	+	0	NA	promoter-TSS (NM_002129)	promoter-TSS (NM_002129)	-122	NM_002129	3148		NM_002129	ENSG00000164104	HMGB2	HMG2	high mobility group box 2	protein-coding
25131	chr10	4075221	4075880	+	0	NA	intron (NR_120632, intron 1 of 3)	MLT1C|LTR|ERVL-MaLR	23824	NR_120632								
184457	chr5	100550751	100550850	+	0	NA	intron (NM_198507, intron 1 of 2)	L2b|LINE|L2	15426	NM_198507	345757		NM_198507	ENSG00000174132	FAM174A	HGS_RE408|NS5ATP6|TMEM157|UNQ1912	family with sequence similarity 174 member A	protein-coding
21139	chr1	203663321	203664230	+	0	NA	intron (NM_001365784, intron 1 of 20)	AluJr|SINE|Alu	35838	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
27745	chr10	35187421	35187680	+	0	NA	intron (NM_183012, intron 4 of 5)	AluSx1|SINE|Alu	-7577	NM_001267569	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
105741	chr18	2738701	2739100	+	0	NA	intron (NM_015295, intron 26 of 47)	intron (NM_015295, intron 26 of 47)	83174	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
229572	chr9	123304301	123305160	+	0	NA	Intergenic	FRAM|SINE|Alu	-36144	NM_018387	55342		NM_018387	ENSG00000165209	STRBP	HEL162|ILF3L|SPNR|p74	spermatid perinuclear RNA binding protein	protein-coding
203760	chr7	1176021	1176540	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	15495	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
1570	chr1	3536301	3536500	+	0	NA	intron (NM_001409, intron 4 of 36)	intron (NM_001409, intron 4 of 36)	24390	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
92768	chr17	15568271	15568430	+	0	NA	intron (NM_001282540, intron 12 of 12)	L2b|LINE|L2	-4719	NM_145301	201158		NM_145301	ENSG00000175106	TVP23C	FAM18B2	trans-golgi network vesicle protein 23 homolog C	protein-coding
218476	chr8	51851771	51851930	+	0	NA	intron (NM_001286783, intron 1 of 5)	AluSp|SINE|Alu	-42405	NM_144651	137902		NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin like	protein-coding
43779	chr11	86258821	86259300	+	0	NA	intron (NM_001330334, intron 6 of 9)	AluSx1|SINE|Alu	14307	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
117555	chr19	21047521	21047980	+	0	NA	intron (NM_025189, intron 4 of 4)	L1PA10|LINE|L1	27093	NM_025189	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
224352	chr9	6944171	6944530	+	0	NA	intron (NR_148677, intron 8 of 21)	intron (NR_148677, intron 8 of 21)	186377	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
76140	chr15	72590401	72590800	+	0	NA	3' UTR (NM_005744, exon 14 of 14)	3' UTR (NM_005744, exon 14 of 14)	3383	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
57926	chr12	123580971	123581130	+	0	NA	TTS (NR_110049)	TTS (NR_110049)	3277	NR_110049	101927415		NR_110049		TMED2-DT	-	TMED2 divergent transcript	ncRNA
3998	chr1	18919451	18919550	+	0	NA	intron (NM_001136265, intron 3 of 8)	intron (NM_001136265, intron 3 of 8)	-16701	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
214032	chr7	143290171	143290800	+	0	NA	intron (NM_001224, intron 1 of 11)	intron (NM_001224, intron 1 of 11)	897	NM_001224	835		NM_001224	ENSG00000106144	CASP2	CASP-2|ICH1|MRT80|NEDD-2|NEDD2|PPP1R57	caspase 2	protein-coding
194215	chr6	32189891	32191200	+	0	NA	promoter-TSS (NM_002586).6	promoter-TSS (NM_002586).6	-343	NM_002586	5089		NM_002586	ENSG00000204304	PBX2	G17|HOX12|PBX2MHC	PBX homeobox 2	protein-coding
71454	chr14	105801201	105801480	+	0	NA	Intergenic	Intergenic	56232	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA
49499	chr12	25322321	25323100	+	0	NA	Intergenic	Intergenic	-71781	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
28220	chr10	45235201	45235500	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	71336	NR_036112	100422988		NR_036112	ENSG00000263476	MIR3156-1	mir-3156-1	microRNA 3156-1	ncRNA
20843	chr1	201792951	201793280	+	0	NA	intron (NM_001167738, intron 11 of 26)	intron (NM_001167738, intron 11 of 26)	-15496	NR_031599	100302158		NR_031599	ENSG00000221028	MIR1231	MIRN1231|hsa-mir-1231	microRNA 1231	ncRNA
93055	chr17	17442771	17442930	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-34150	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
71232	chr14	105175751	105175850	+	0	NA	3' UTR (NM_001318380, exon 5 of 5)	3' UTR (NM_001318380, exon 5 of 5)	5512	NM_177533	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
141226	chr2	239440751	239441680	+	0	NA	Intergenic	Intergenic	39467	NR_135577	101928111		NR_135575	ENSG00000222020	HDAC4-AS1	-	HDAC4 antisense RNA 1	ncRNA
229465	chr9	121748021	121749030	+	0	NA	intron (NM_138709, intron 1 of 13)	intron (NM_138709, intron 1 of 13)	5740	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
4847	chr1	23690551	23690650	+	0	NA	Intergenic	AluY|SINE|Alu	-1179	NM_001199802	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
156423	chr22	41206671	41206830	+	0	NA	intron (NM_031488, intron 1 of 16)	AluY|SINE|Alu	1438	NM_031488	83746		NM_031488	ENSG00000100395	L3MBTL2	H-l(3)mbt-l|L3MBT	L3MBTL histone methyl-lysine binding protein 2	protein-coding
32911	chr10	110205551	110205850	+	0	NA	Intergenic	Intergenic	-1905	NM_130439	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
92539	chr17	8944871	8945600	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	20472	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
198133	chr6	90457501	90457780	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	129432	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
16207	chr1	153876071	153876900	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	46487	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
203491	chr7	594801	595130	+	0	NA	intron (NM_001164759, intron 7 of 10)	intron (NM_001164759, intron 7 of 10)	-7880	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
177503	chr4	114952451	114952550	+	0	NA	intron (NM_022569, intron 4 of 13)	intron (NM_022569, intron 4 of 13)	161120	NM_022569	64579		NM_022569	ENSG00000138653	NDST4	N-HSST|N-HSST 4|NDST-4|NHSST4	N-deacetylase and N-sulfotransferase 4	protein-coding
228289	chr9	98092451	98093230	+	0	NA	intron (NM_014788, intron 4 of 5)	MER57B1|LTR|ERV1	26382	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
81874	chr16	11671801	11672230	+	0	NA	intron (NM_003498, intron 1 of 1)	intron (NM_003498, intron 1 of 1)	3560	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
189420	chr5	172833471	172835280	+	0	NA	5' UTR (NM_001031711, exon 1 of 10)	5' UTR (NM_001031711, exon 1 of 10)	124	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
15821	chr1	151311271	151312400	+	0	NA	intron (NM_001369629, intron 3 of 12)	intron (NM_001369629, intron 3 of 12)	15581	NM_001198774	5298		NM_002651	ENSG00000143393	PI4KB	DFNA87|NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIII|PI4KIIIBETA|PIK4CB	phosphatidylinositol 4-kinase beta	protein-coding
4545	chr1	22024801	22027280	+	0	NA	promoter-TSS (NR_110692)	promoter-TSS (NR_110692)	8	NR_110692	101928043		NR_110692	ENSG00000228397	LINC01635	-	long intergenic non-protein coding RNA 1635	ncRNA
160764	chr3	32684101	32685780	+	0	NA	promoter-TSS (NM_015442)	promoter-TSS (NM_015442)	-248	NR_046352	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
36364	chr11	3944771	3945330	+	0	NA	intron (NM_001382571, intron 1 of 9)	MIR|SINE|MIR	88988	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
11829	chr1	92869621	92870430	+	0	NA	intron (NM_001252269, intron 1 of 3)	Tigger11a|DNA|TcMar-Tigger	7125	NM_001252271	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
126406	chr2	27648671	27649230	+	0	NA	intron (NR_026735, intron 11 of 11)	intron (NR_026735, intron 11 of 11)	-14521	NM_018158	22950		NM_018158	ENSG00000163798	SLC4A1AP	HLC3	solute carrier family 4 member 1 adaptor protein	protein-coding
102900	chr17	76540251	76540350	+	0	NA	intron (NM_001077620, intron 1 of 4)	intron (NM_001077620, intron 1 of 4)	256	NM_001077620	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
164152	chr3	56765221	56765680	+	0	NA	intron (NM_001289698, intron 3 of 10)	intron (NM_001289698, intron 3 of 10)	10267	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
23269	chr1	227899351	227899530	+	0	NA	Intergenic	Intergenic	42243	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
40528	chr11	64293951	64295350	+	0	NA	intron (NR_133661, intron 2 of 6)	intron (NR_133661, intron 2 of 6)	2652	NM_001317090	50801		NM_016611	ENSG00000182450	KCNK4	FHEIG|K2p4.1|TRAAK|TRAAK1	potassium two pore domain channel subfamily K member 4	protein-coding
190584	chr5	181070051	181070350	+	0	NA	Intergenic	MER52C|LTR|ERV1	-26716	NR_107056	102465882		NR_107056	ENSG00000277912	MIR8089	hsa-mir-8089	microRNA 8089	ncRNA
155802	chr22	39304201	39304480	+	0	NA	Intergenic	L2b|LINE|L2	9571	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
113231	chr19	8481001	8482200	+	0	NA	intron (NM_031203, intron 13 of 16)	MER107|DNA|hAT-Charlie	21040	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
202156	chr6	155191421	155191550	+	0	NA	intron (NM_001384547, intron 13 of 25)	intron (NM_001384547, intron 13 of 25)	-25481	NM_001010927	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
174864	chr4	48722801	48723230	+	0	NA	intron (NM_015030, intron 1 of 63)	intron (NM_015030, intron 1 of 63)	57264	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
15128	chr1	148683601	148684000	+	0	NA	Intergenic	L2b|LINE|L2	-4036	NM_001364008	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
162834	chr3	49220971	49221130	+	0	NA	intron (NM_178173, intron 4 of 9)	LTR12|LTR|ERV1	21552	NM_001135197	339834		NM_178173	ENSG00000173421	IHO1	CCDC36|CT74|LELA1	interactor of HORMAD1 1	protein-coding
29082	chr10	67904601	67904800	+	0	NA	intron (NM_001142498, intron 3 of 7)	AluSp|SINE|Alu	13298	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
221219	chr8	120951221	120951630	+	0	NA	Intergenic	Intergenic	-139379	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
102650	chr17	76061871	76062430	+	0	NA	intron (NR_048541, intron 3 of 14)	AluSx1|SINE|Alu	-8494	NM_001260503	6730		NM_014230	ENSG00000167881	SRP68	SCN10	signal recognition particle 68	protein-coding
79510	chr16	798101	798700	+	0	NA	TTS (NM_022092)	TTS (NM_022092)	2334	NM_016541	51764		NM_016541	ENSG00000127588	GNG13	G(gamma)13|HG3J|h2-35	G protein subunit gamma 13	protein-coding
238062	chrX	135931871	135932100	+	0	NA	Intergenic	LTR13|LTR|ERVK	38269	NM_001381902	55511		NM_018666	ENSG00000181433	SAGE1	CT14|SAGE	sarcoma antigen 1	protein-coding
67175	chr14	68813371	68813550	+	0	NA	Intergenic	Intergenic	-17217	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
124704	chr2	3581201	3581450	+	0	NA	TTS (NM_001011)	TTS (NM_001011)	6065	NM_001011	6201		NM_001011	ENSG00000171863	RPS7	DBA8|S7|eS7	ribosomal protein S7	protein-coding
60943	chr13	46354801	46355030	+	0	NA	intron (NM_001286763, intron 10 of 14)	intron (NM_001286763, intron 10 of 14)	32337	NM_001286763	80183		NM_025113	ENSG00000102445	RUBCNL	C13orf18|KIAA0226L|PACER	rubicon like autophagy enhancer	protein-coding
114751	chr19	13278001	13278380	+	0	NA	intron (NM_023035, intron 22 of 46)	L2a|LINE|L2	127779	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
169290	chr3	158434571	158434730	+	0	NA	intron (NM_016625, intron 6 of 9)	intron (NM_016625, intron 6 of 9)	-92058	NR_148407	110599565		NR_148407		UC.134	-	long non-coding RNA uc.134	ncRNA
128013	chr2	47073871	47074730	+	0	NA	3' UTR (NM_001288955, exon 19 of 19)	3' UTR (NM_001288955, exon 19 of 19)	81008	NM_001163561	285051		NM_173649	ENSG00000239605	STPG4	C2orf61|GSE	sperm-tail PG-rich repeat containing 4	protein-coding
73162	chr15	41444221	41444480	+	0	NA	intron (NM_015138, intron 2 of 17)	AluSx1|SINE|Alu	27246	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
161566	chr3	42780771	42781180	+	0	NA	Intergenic	Intergenic	-7722	NM_144719	152206		NM_144719	ENSG00000244607	CCDC13	-	coiled-coil domain containing 13	protein-coding
15783	chr1	151195271	151195630	+	0	NA	Intergenic	Intergenic	-3102	NM_001135638	8394		NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein-coding
124953	chr2	8663971	8664300	+	0	NA	Intergenic	Intergenic	17726	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
31752	chr10	97796321	97797000	+	0	NA	Intergenic	L1MC1|LINE|L1	-24661	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
157938	chr22	49790821	49791550	+	0	NA	intron (NR_146335, intron 8 of 13)	intron (NR_146335, intron 8 of 13)	33146	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
14468	chr1	144475501	144476280	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	-14221	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
99273	chr17	49746721	49747480	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	17031	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
14100	chr1	120917051	120917630	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-3226	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
53339	chr12	64636171	64636330	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSx|SINE|Alu	-13645	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52859	chr12	57124151	57125030	+	0	NA	Intergenic	Intergenic	-3893	NM_002332	4035		NM_002332	ENSG00000123384	LRP1	A2MR|APOER|APR|CD91|DDH3|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5	LDL receptor related protein 1	protein-coding
65289	chr14	50046351	50046450	+	0	NA	intron (NR_131171, intron 4 of 8)	LTR7|LTR|ERV1	-38880	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
61281	chr13	50127321	50128150	+	0	NA	intron (NR_109974, intron 2 of 6)	CpG-6679	-2194	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
136320	chr2	175110951	175111450	+	0	NA	intron (NR_045772, intron 10 of 14)	intron (NR_045772, intron 10 of 14)	56509	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
70555	chr14	102554751	102555730	+	0	NA	non-coding (NR_146561, exon 3 of 3)	non-coding (NR_146561, exon 3 of 3)	9986	NR_146561	105370681		NR_146561	ENSG00000259230	LINC02323	-	long intergenic non-protein coding RNA 2323	ncRNA
39903	chr11	62511051	62511380	+	0	NA	intron (NM_024060, intron 4 of 5)	MARNA|DNA|TcMar-Mariner	34449	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
97458	chr17	43700101	43700500	+	0	NA	Intergenic	L1MC4|LINE|L1	-38378	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
160663	chr3	31918201	31918650	+	0	NA	intron (NM_001174060, intron 1 of 10)	AluJo|SINE|Alu	-63325	NM_001137674	344787		NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
96594	chr17	40530351	40530550	+	0	NA	Intergenic	Intergenic	-28827	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
115677	chr19	16183671	16183830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1660	NM_014077	26017		NM_014077	ENSG00000105058	FAM32A	OTAG-12|OTAG12	family with sequence similarity 32 member A	protein-coding
213307	chr7	135159951	135160880	+	0	NA	intron (NM_018295, intron 1 of 1)	intron (NM_018295, intron 1 of 1)	9059	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
191786	chr6	14134421	14134680	+	0	NA	intron (NM_001040280, intron 4 of 4)	intron (NM_001040280, intron 4 of 4)	16778	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
208967	chr7	74193571	74194250	+	0	NA	intron (NM_022170, intron 5 of 6)	intron (NM_022170, intron 5 of 6)	2712	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
124603	chr2	949601	950000	+	0	NA	non-coding (NR_136151, exon 3 of 3)	non-coding (NR_136151, exon 3 of 3)	-1049	NM_018968	54221		NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	syntrophin gamma 2	protein-coding
138969	chr2	218272451	218273630	+	0	NA	TTS (NM_001077399)	TTS (NM_001077399)	2521	NM_001077399	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
95177	chr17	35174351	35174650	+	0	NA	intron (NM_173167, intron 13 of 18)	intron (NM_173167, intron 13 of 18)	19893	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
99086	chr17	48997251	48999050	+	0	NA	intron (NM_001160423, intron 1 of 12)	CpG-11375	765	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
121083	chr19	45888821	45889480	+	0	NA	TTS (NM_001012643)	TTS (NM_001012643)	-3009	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
137056	chr2	190891371	190892550	+	0	NA	intron (NM_014905, intron 1 of 17)	L2b|LINE|L2	11139	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
198716	chr6	108168151	108168930	+	0	NA	intron (NM_001286102, intron 1 of 8)	CpG-23912	517	NM_001286102	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
127161	chr2	37982171	37982400	+	0	NA	intron (NM_144713, intron 5 of 10)	LTR78|LTR|ERV1	31821	NM_144713	151393		NM_144713	ENSG00000115841	RMDN2	BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
65938	chr14	55411271	55412280	+	0	NA	promoter-TSS (NM_014924)	promoter-TSS (NM_014924)	55	NM_014924	22863		NM_014924	ENSG00000126775	ATG14	ATG14L|BARKOR|KIAA0831	autophagy related 14	protein-coding
64043	chr14	22533121	22533950	+	0	NA	Intergenic	Intergenic	23527	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
74247	chr15	56921501	56921900	+	0	NA	intron (NM_207038, intron 3 of 19)	intron (NM_207038, intron 3 of 19)	2255	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
179168	chr4	170025671	170026840	+	0	NA	5' UTR (NM_001301647, exon 1 of 2)	5' UTR (NM_001301647, exon 1 of 2)	140	NM_001301647	9848		NM_021647	ENSG00000198948	MFAP3L	NYD-sp9	microfibril associated protein 3 like	protein-coding
125838	chr2	24364851	24365150	+	0	NA	Intergenic	Intergenic	-4464	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
12593	chr1	109034271	109035080	+	0	NA	intron (NM_001142550, intron 1 of 14)	MER1B|DNA|hAT-Charlie	7427	NM_001142551	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
143891	chr20	32575971	32576130	+	0	NA	intron (NM_001256798, intron 1 of 10)	L2a|LINE|L2	9283	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
120951	chr19	45695151	45695800	+	0	NA	exon (NM_017659, exon 3 of 7)	exon (NM_017659, exon 3 of 7)	2809	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
110904	chr19	2754721	2754980	+	0	NA	3' UTR (NM_003021, exon 12 of 12)	3' UTR (NM_003021, exon 12 of 12)	-14774	NM_213568	29985		NM_144564	ENSG00000141873	SLC39A3	ZIP-3|ZIP3	solute carrier family 39 member 3	protein-coding
167103	chr3	127592201	127593080	+	0	NA	intron (NM_001353005, intron 2 of 11)	AluYb8|SINE|Alu	-1907	NM_001142646	131601		NM_016372	ENSG00000163870	TPRA1	GPR175|TMEM227|TPRA40	transmembrane protein adipocyte associated 1	protein-coding
27184	chr10	28552751	28552850	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	19682	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
227009	chr9	83706671	83707300	+	0	NA	promoter-TSS (NR_135839)	promoter-TSS (NR_135839)	-850	NR_135839	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
219675	chr8	80511321	80511580	+	0	NA	intron (NM_023929, intron 2 of 6)	intron (NM_023929, intron 2 of 6)	25224	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
164661	chr3	66885321	66885580	+	0	NA	Intergenic	Intergenic	-112857	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
194499	chr6	33274201	33275300	+	0	NA	intron (NM_022551, intron 2 of 5)	MLT1C|LTR|ERVL-MaLR	-2373	NM_003782	8705		NM_003782	ENSG00000235863	B3GALT4	BETA3GALT4|GALT2|GALT4	beta-1,3-galactosyltransferase 4	protein-coding
218443	chr8	47956321	47956900	+	0	NA	intron (NM_006904, intron 3 of 85)	AluJb|SINE|Alu	3526	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
172631	chr4	2531371	2531730	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3825	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
173062	chr4	6134601	6135530	+	0	NA	intron (NM_144720, intron 1 of 12)	intron (NM_144720, intron 1 of 12)	59554	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
149228	chr21	25564701	25565000	+	0	NA	intron (NR_001458, intron 1 of 2)	MIR3|SINE|MIR	2705	NR_001458	114614		NR_001458	ENSG00000234883	MIR155HG	BIC|BIC-155|MIRHG2|NCRNA00172|miPEP155	MIR155 host gene	ncRNA
228666	chr9	107289851	107290150	+	0	NA	intron (NM_001244713, intron 1 of 9)	L2|LINE|L2	5231	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
203036	chr6	164086371	164086730	+	0	NA	Intergenic	MIRb|SINE|MIR	-415066	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
90047	chr16	89920001	89920200	+	0	NA	exon (NM_002386, exon 1 of 1)	exon (NM_002386, exon 1 of 1)	1238	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
55682	chr12	107474951	107475250	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	-105774	NM_001017523	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
110654	chr19	2244771	2244930	+	0	NA	intron (NM_007165, intron 4 of 8)	intron (NM_007165, intron 4 of 8)	-4473	NM_000479	268		NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
120601	chr19	45023051	45023150	+	0	NA	intron (NM_006509, intron 4 of 10)	intron (NM_006509, intron 4 of 10)	-15945	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
128160	chr2	48508351	48508850	+	0	NA	intron (NM_001193475, intron 17 of 19)	intron (NM_001193475, intron 17 of 19)	-21325	NM_001198593	286749		NM_172311	ENSG00000068781	STON1-GTF2A1L	ALF|GTF2A1L|GTF2A1LF|SALF	STON1-GTF2A1L readthrough	protein-coding
148938	chr21	10119571	10120000	+	0	NA	Intergenic	SST1|Satellite|centr	-293712	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
7684	chr1	35810951	35811550	+	0	NA	intron (NM_017629, intron 1 of 17)	AluSx|SINE|Alu	3234	NM_017629	192670		NM_017629	ENSG00000134698	AGO4	EIF2C4	argonaute RISC component 4	protein-coding
198267	chr6	99571851	99571950	+	0	NA	Intergenic	AluYm1|SINE|Alu	-3086	NM_001013399	892		NM_005190	ENSG00000112237	CCNC	CycC|SRB11|hSRB11	cyclin C	protein-coding
141377	chr2	240700071	240700230	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	8284	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
14883	chr1	146932621	146933080	+	0	NA	Intergenic	CpG	-5695	NM_001278141	149013		NM_001278141	ENSG00000268043	NBPF12	COAS1|KIAA1245	NBPF member 12	protein-coding
4067	chr1	19065871	19066230	+	0	NA	Intergenic	Intergenic	-109374	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
113810	chr19	10583101	10583300	+	0	NA	intron (NM_001300887, intron 3 of 11)	MIR3|SINE|MIR	4112	NM_005498	10053		NM_005498	ENSG00000129354	AP1M2	AP1-mu2|HSMU1B|MU-1B|MU1B|mu2	adaptor related protein complex 1 subunit mu 2	protein-coding
153890	chr22	30291851	30292550	+	0	NA	3' UTR (NM_001204240, exon 9 of 9)	3' UTR (NM_001204240, exon 9 of 9)	-2695	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
181721	chr5	50678421	50679080	+	0	NA	intron (NM_024615, intron 2 of 25)	MER77|LTR|ERVL	11336	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
21307	chr1	204504801	204505000	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10095	NM_001377334	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
8293	chr1	40043721	40044250	+	0	NA	intron (NM_001350484, intron 2 of 13)	intron (NM_001350484, intron 2 of 13)	2959	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
161260	chr3	39259971	39260330	+	0	NA	Intergenic	L1MA7|LINE|L1	19886	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
169596	chr3	170999951	171000050	+	0	NA	intron (NM_000340, intron 8 of 10)	intron (NM_000340, intron 8 of 10)	26720	NM_001278658	6514		NM_000340	ENSG00000163581	SLC2A2	GLUT2	solute carrier family 2 member 2	protein-coding
222107	chr8	131898971	131899130	+	0	NA	Intergenic	LTR88a|LTR|Gypsy?	-5043	NM_001323553	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
170705	chr3	187944671	187945230	+	0	NA	Intergenic	Intergenic	31457	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
60365	chr13	40924701	40924900	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-3026	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
41443	chr11	66083351	66084380	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	13593	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
185963	chr5	133055871	133056250	+	0	NA	intron (NM_002154, intron 1 of 18)	AluSx1|SINE|Alu	4047	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
98064	chr17	45483501	45484000	+	0	NA	intron (NM_014798, intron 1 of 11).3	MIRb|SINE|MIR	6971	NR_027774	9842		NM_014798	ENSG00000225190	PLEKHM1	AP162|B2|OPTA3|OPTB6	pleckstrin homology and RUN domain containing M1	protein-coding
212986	chr7	130985651	130985750	+	0	NA	intron (NR_109855, intron 2 of 4)	L2b|LINE|L2	72236	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
61836	chr13	76411451	76411550	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	474905	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
79973	chr16	1787071	1787230	+	0	NA	intron (NM_012225, intron 3 of 6)	intron (NM_012225, intron 3 of 6)	4190	NR_104318	10101		NM_012225	ENSG00000095906	NUBP2	CFD1|CIAO6|NBP 2|NUBP1	NUBP iron-sulfur cluster assembly factor 2, cytosolic	protein-coding
190336	chr5	179631571	179631980	+	0	NA	intron (NM_001364226, intron 1 of 13)	AluJr|SINE|Alu	3009	NM_001364233	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
127902	chr2	46295221	46295700	+	0	NA	Intergenic	Intergenic	-1947	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
120865	chr19	45531901	45532300	+	0	NA	intron (NM_001017989, intron 1 of 1)	MER77|LTR|ERVL	24621	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
94947	chr17	32079401	32080430	+	0	NA	Intergenic	Intergenic	39579	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
32623	chr10	103667071	103667700	+	0	NA	intron (NM_001365079, intron 1 of 8)	intron (NM_001365079, intron 1 of 8)	10830	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
100228	chr17	59324201	59324430	+	0	NA	Intergenic	AluSz6|SINE|Alu	-7340	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
166944	chr3	125150451	125150850	+	0	NA	TTS (NR_049815)	TTS (NR_049815)	902	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
164805	chr3	69920051	69920280	+	0	NA	intron (NM_006722, intron 2 of 9)	LTR13|LTR|ERVK	-16427	NM_001184968	4286		NM_000248	ENSG00000187098	MITF	CMM8|COMMAD|MI|MITF-A|WS2|WS2A|bHLHe32	melanocyte inducing transcription factor	protein-coding
130582	chr2	85840971	85841300	+	0	NA	intron (NM_001363847, intron 5 of 5)	intron (NM_001363847, intron 5 of 5)	13036	NM_001354248	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
217778	chr8	33471451	33472200	+	0	NA	intron (NM_032664, intron 1 of 4)	intron (NM_032664, intron 1 of 4)	1321	NM_032664	84750		NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
57097	chr12	121040901	121041500	+	0	NA	Intergenic	L2c|LINE|L2	-1958	NM_198213	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
60390	chr13	40951471	40951900	+	0	NA	intron (NM_001370329, intron 4 of 9)	AluSz|SINE|Alu	-29911	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
14721	chr1	145964101	145965250	+	0	NA	promoter-TSS (NM_001330685)	promoter-TSS (NM_001330685)	-7	NM_001330685	84265		NM_032305	ENSG00000121851	POLR3GL	RPC32HOM|SOFM|flj32422	RNA polymerase III subunit GL	protein-coding
155155	chr22	37673401	37674000	+	0	NA	Intergenic	L2b|LINE|L2	-1936	NM_002305	3956		NM_002305	ENSG00000100097	LGALS1	GAL1|GBP	galectin 1	protein-coding
106457	chr18	13751771	13752000	+	0	NA	intron (NR_165427, intron 9 of 12)	L1PA6|LINE|L1	25212	NM_001378134	8731		NM_003799	ENSG00000101654	RNMT	CMT1|CMT1c|MET|Met|N7-MTase|RG7MT1|cm1p|hCMT1|hMet	RNA guanine-7 methyltransferase	protein-coding
236459	chrX	71573871	71574030	+	0	NA	3' UTR (NM_181673, exon 22 of 22)	3' UTR (NM_181673, exon 22 of 22)	-4074	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
122735	chr19	50050051	50051600	+	0	NA	non-coding (NR_027257, exon 1 of 3)	non-coding (NR_027257, exon 1 of 3)	236	NR_138096	400710		NR_027257	ENSG00000204666	ZNF473CR	-	ZNF473 cis regulating lncRNA	ncRNA
110753	chr19	2344201	2344600	+	0	NA	exon (NM_001077238, exon 11 of 15)	exon (NM_001077238, exon 11 of 15)	15716	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
6933	chr1	31703721	31704380	+	0	NA	promoter-TSS (NM_001856)	promoter-TSS (NM_001856)	-33	NM_001856	1307		NM_001856	ENSG00000084636	COL16A1	447AA|FP1572	collagen type XVI alpha 1 chain	protein-coding
171198	chr3	195699971	195700430	+	0	NA	TTS (NR_030296).6	TTS (NR_030296).6	799	NR_030296	693155		NR_030296	ENSG00000207650	MIR570	MIRN570|hsa-mir-570	microRNA 570	ncRNA
127652	chr2	43155571	43155730	+	0	NA	Intergenic	Intergenic	-53205	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
172709	chr4	2794471	2795430	+	0	NA	intron (NM_001122681, intron 1 of 12)	MIR|SINE|MIR	1865	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
1823	chr1	6243871	6244030	+	0	NA	promoter-TSS (NM_001024598)	promoter-TSS (NM_001024598)	-229	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
169568	chr3	170360501	170361430	+	0	NA	exon (NM_001248008, exon 1 of 6)	exon (NM_001248008, exon 1 of 6)	1342	NM_001248008	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
201132	chr6	142889501	142889900	+	0	NA	intron (NM_006734, intron 1 of 9)	MIRb|SINE|MIR	55476	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
54912	chr12	96109551	96110050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-66280	NM_001256643	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
166022	chr3	108369621	108369880	+	0	NA	intron (NM_001282558, intron 8 of 9)	L1PA4|LINE|L1	57965	NM_001282557	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
179372	chr4	183447451	183448150	+	0	NA	3' UTR (NM_017632, exon 3 of 3)	3' UTR (NM_017632, exon 3 of 3)	3164	NM_017632	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
199788	chr6	126199301	126199750	+	0	NA	Intergenic	Intergenic	-140264	NM_001286524	387103		NM_001012507	ENSG00000203760	CENPW	C6orf173|CENP-W|CUG2	centromere protein W	protein-coding
58005	chr12	124350521	124350780	+	0	NA	exon (NM_006312, exon 30 of 49)	exon (NM_006312, exon 30 of 49)	-13408	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
122869	chr19	50496671	50497030	+	0	NA	Intergenic	Intergenic	14341	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
19942	chr1	184792651	184792750	+	0	NA	3' UTR (NM_052966, exon 14 of 14)	3' UTR (NM_052966, exon 14 of 14)	-37842	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
162307	chr3	47418871	47419280	+	0	NA	intron (NM_001320044, intron 10 of 19)	intron (NM_001320044, intron 10 of 19)	38054	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
208055	chr7	56065001	56065450	+	0	NA	intron (NM_001146333, intron 1 of 7)	L1MC5|LINE|L1	939	NM_001366649	25870		NM_015411	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
204915	chr7	6160171	6160400	+	0	NA	intron (NM_032172, intron 17 of 17)	intron (NM_032172, intron 17 of 17)	11852	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
230048	chr9	127396471	127399350	+	0	NA	exon (NM_001271711, exon 3 of 9)	exon (NM_001271711, exon 3 of 9)	741	NM_014580	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
1480	chr1	2701771	2702280	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-69009	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
73547	chr15	44066271	44066630	+	0	NA	intron (NM_001286491, intron 1 of 14)	intron (NM_001286491, intron 1 of 14)	127996	NM_001286490	84978		NM_032892	ENSG00000171877	FRMD5	NEDEMA	FERM domain containing 5	protein-coding
96418	chr17	40170901	40171700	+	0	NA	3' UTR (NM_007359, exon 14 of 14)	3' UTR (NM_007359, exon 14 of 14)	-5710	NM_001303534	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
43846	chr11	87290371	87290630	+	0	NA	intron (NM_022918, intron 6 of 14)	intron (NM_022918, intron 6 of 14)	252566	NM_001168724	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
111427	chr19	3788871	3790230	+	0	NA	intron (NM_002378, intron 1 of 13)	intron (NM_002378, intron 1 of 13)	-3169	NM_139354	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
171166	chr3	195636301	195636680	+	0	NA	Intergenic	Intergenic	15669	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
120739	chr19	45375051	45375550	+	0	NA	Intergenic	AluJb|SINE|Alu	-4713	NM_001130867	2068		NM_000400	ENSG00000104884	ERCC2	COFS2|EM9|TFIIH|TTD|TTD1|XPD	ERCC excision repair 2, TFIIH core complex helicase subunit	protein-coding
63433	chr13	114103151	114103480	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-25360	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
21936	chr1	207866401	207866990	+	0	NA	Intergenic	Intergenic	-43992	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
125467	chr2	12303301	12303700	+	0	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	104370	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
209123	chr7	75046351	75046650	+	0	NA	intron (NM_030798, intron 10 of 10)	intron (NM_030798, intron 10 of 10)	27302	NM_030798	81554		NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
72588	chr15	34984971	34985950	+	0	NA	intron (NM_014106, intron 2 of 2)	intron (NM_014106, intron 2 of 2)	2827	NM_014106	54989		NM_014106	ENSG00000198146	ZNF770	PRO1914	zinc finger protein 770	protein-coding
53107	chr12	57771321	57773250	+	0	NA	promoter-TSS (NM_023033)	promoter-TSS (NM_023033)	-180	NM_005371	4234		NM_005371	ENSG00000037897	METTL1	C12orf1|TRM8|TRMT8|YDL201w	methyltransferase 1, tRNA methylguanosine	protein-coding
24569	chr1	244970101	244971600	+	0	NA	promoter-TSS (NR_111907)	promoter-TSS (NR_111907)	19	NR_111907	101928068		NR_111907		LOC101928068	-	uncharacterized LOC101928068	ncRNA
74191	chr15	55742271	55742430	+	0	NA	intron (NM_173814, intron 1 of 19)	intron (NM_173814, intron 1 of 19)	802	NM_173814	283659		NM_173814	ENSG00000166450	PRTG	IGDCC5	protogenin	protein-coding
126394	chr2	27581551	27582050	+	0	NA	exon (NM_032266, exon 1 of 1)	exon (NM_032266, exon 1 of 1)	-1169	NM_001271288	84450		NM_032434	ENSG00000243943	ZNF512	-	zinc finger protein 512	protein-coding
50012	chr12	42364301	42364700	+	0	NA	intron (NM_201515, intron 5 of 10)	AluJr|SINE|Alu	32702	NM_001364834	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
195395	chr6	36768751	36768850	+	0	NA	intron (NM_001376889, intron 11 of 21)	MIRb|SINE|MIR	-3005	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
197418	chr6	73580171	73580950	+	0	NA	Intergenic	Intergenic	-59528	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
57129	chr12	121215251	121215750	+	0	NA	intron (NR_046373, intron 1 of 10)	AluJb|SINE|Alu	5371	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
227303	chr9	89417771	89418300	+	0	NA	intron (NM_001371201, intron 2 of 18)	intron (NM_001371201, intron 2 of 18)	61855	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
151521	chr21	46435921	46436380	+	0	NA	intron (NM_006031, intron 39 of 46)	CpG	-22741	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
33824	chr10	123907321	123907580	+	0	NA	Intergenic	Intergenic	-15643	NM_198148	119587		NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	carboxypeptidase X, M14 family member 2	protein-coding
146732	chr20	50730801	50732750	+	0	NA	5' UTR (NM_032521, exon 1 of 3)	5' UTR (NM_032521, exon 1 of 3)	195	NM_032521	84612		NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding
81985	chr16	11892501	11892950	+	0	NA	intron (NM_001130007, intron 5 of 14)	AluSx3|SINE|Alu	23231	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
35388	chr11	1340301	1341280	+	0	NA	Intergenic	Intergenic	31082	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
182374	chr5	60701271	60702100	+	0	NA	Intergenic	MER50|LTR|ERV1	-1519	NM_018369	55789		NM_018369	ENSG00000035499	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
174552	chr4	40210501	40211200	+	0	NA	intron (NM_001278362, intron 2 of 3)	MER106B|DNA|hAT-Charlie	13819	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
35512	chr11	1548271	1550330	+	0	NA	Intergenic	Intergenic	22971	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
74898	chr15	63600201	63602400	+	0	NA	promoter-TSS (NR_034080)	promoter-TSS (NR_034080)	-473	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
228698	chr9	108933501	108934950	+	0	NA	promoter-TSS (NM_003640)	promoter-TSS (NM_003640)	-101	NM_001318360	8518		NM_003640	ENSG00000070061	ELP1	DYS|FD|IKAP|IKBKAP|IKI3|TOT1	elongator acetyltransferase complex subunit 1	protein-coding
221495	chr8	124540701	124541050	+	0	NA	intron (NM_001278645, intron 1 of 3)	intron (NM_001278645, intron 1 of 3)	1752	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
92421	chr17	8392301	8392900	+	0	NA	3' UTR (NM_001146684, exon 3 of 3)	3' UTR (NM_001146684, exon 3 of 3)	5227	NM_001146684	643904		NM_001146684	ENSG00000189051	RNF222	-	ring finger protein 222	protein-coding
141520	chr2	241215001	241215830	+	0	NA	intron (NM_001370694, intron 18 of 24)	intron (NM_001370694, intron 18 of 24)	26738	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
213834	chr7	141698501	141699500	+	0	NA	intron (NM_001080392, intron 1 of 8).2	intron (NM_001080392, intron 1 of 8).2	3166	NM_001080392	57189		NM_001080392	ENSG00000257093	DENND11	KIAA1147|LCHN|PRO2561	DENN domain containing 11	protein-coding
24738	chr1	248481701	248482440	+	0	NA	Intergenic	Arthur1C|DNA|hAT-Tip100	-6519	NM_001004697	401993		NM_001004697	ENSG00000203661	OR2T5	OR1-62|OR2T29	olfactory receptor family 2 subfamily T member 5	protein-coding
72312	chr15	31223651	31224150	+	0	NA	intron (NM_001243538, intron 2 of 3)	intron (NM_001243538, intron 2 of 3)	6962	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
197685	chr6	85629701	85630380	+	0	NA	intron (NM_001253771, intron 5 of 10)	intron (NM_001253771, intron 5 of 10)	11411	NM_001159675	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
91932	chr17	7331821	7332080	+	0	NA	Intergenic	Intergenic	-2615	NM_001005408	84461		NM_032442	ENSG00000215041	NEURL4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding
148074	chr20	63289221	63289480	+	0	NA	non-coding (NR_104023, exon 4 of 4)	non-coding (NR_104023, exon 4 of 4)	2542	NR_036220	100422945		NR_036220	ENSG00000266104	MIR4326	mir-4326	microRNA 4326	ncRNA
65908	chr14	55279751	55279850	+	0	NA	intron (NM_152231, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	7646	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
54657	chr12	93273971	93274330	+	0	NA	intron (NR_040096, intron 2 of 4)	intron (NR_040096, intron 2 of 4)	99784	NR_120492	102724933		NR_120492		LINC02412	-	long intergenic non-protein coding RNA 2412	ncRNA
41819	chr11	67025871	67026030	+	0	NA	intron (NM_177963, intron 1 of 7)	MIRc|SINE|MIR	2816	NM_177963	91683		NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
45811	chr11	119347721	119348050	+	0	NA	Intergenic	Intergenic	-1180	NM_015645	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
31887	chr10	100275951	100276450	+	0	NA	intron (NM_173809, intron 4 of 4)	intron (NM_173809, intron 4 of 4)	-8562	NM_001303407	55280		NM_018294	ENSG00000095485	CWF19L1	C19L1|SCAR17|hDrn1	CWF19 like cell cycle control factor 1	protein-coding
8962	chr1	44417001	44417430	+	0	NA	intron (NM_018150, intron 2 of 14)	intron (NM_018150, intron 2 of 14)	-6786	NM_001319957	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
10518	chr1	66932601	66933230	+	0	NA	intron (NM_001077704, intron 1 of 13)	intron (NM_001077704, intron 1 of 13)	2659	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
137356	chr2	196155551	196156250	+	0	NA	intron (NM_004226, intron 3 of 7)	intron (NM_004226, intron 3 of 7)	15678	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
121383	chr19	46904521	46904780	+	0	NA	intron (NM_004491, intron 1 of 6)	intron (NM_004491, intron 1 of 6)	43653	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
203584	chr7	918851	919530	+	0	NA	intron (NM_006869, intron 4 of 10)	intron (NM_006869, intron 4 of 10)	1699	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
85447	chr16	50553601	50554000	+	0	NA	intron (NM_033119, intron 3 of 9)	intron (NM_033119, intron 3 of 9)	5404	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
223475	chr8	144050371	144051580	+	0	NA	TTS (NR_158554)	TTS (NR_158554)	1577	NR_158554	392275		NR_158554		SMPD5	MA-nSMase	sphingomyelin phosphodiesterase 5 (pseudogene)	pseudo
78847	chr15	100201451	100202080	+	0	NA	intron (NM_139057, intron 7 of 21)	intron (NM_139057, intron 7 of 21)	140210	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
48546	chr12	10222301	10222700	+	0	NA	3' UTR (NM_031412, exon 4 of 4)	3' UTR (NM_031412, exon 4 of 4)	9623	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
213007	chr7	131008701	131008900	+	0	NA	intron (NR_109850, intron 3 of 5)	L2b|LINE|L2	95336	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
57327	chr12	121689801	121690230	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-17371	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
114933	chr19	13969671	13970050	+	0	NA	intron (NM_002918, intron 10 of 20)	L2a|LINE|L2	-16468	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
60020	chr13	32536621	32536880	+	0	NA	exon (NM_014887, exon 2 of 6)	exon (NM_014887, exon 2 of 6)	2045	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
136020	chr2	172441401	172441630	+	0	NA	intron (NM_001365530, intron 1 of 25)	AluJr|SINE|Alu	13929	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
45118	chr11	117148801	117149800	+	0	NA	intron (NR_110282, intron 1 of 2)	AluJo|SINE|Alu	5013	NM_002572	5049		NM_002572	ENSG00000168092	PAFAH1B2	HEL-S-303	platelet activating factor acetylhydrolase 1b catalytic subunit 2	protein-coding
103928	chr17	79830371	79830530	+	0	NA	Intergenic	Intergenic	6998	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
39933	chr11	62536651	62536980	+	0	NA	intron (NM_024060, intron 1 of 5)	MIRb|SINE|MIR	8849	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
10382	chr1	64968451	64968700	+	0	NA	intron (NM_001321853, intron 2 of 26)	AluJr|SINE|Alu	-1639	NM_001320923	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
14130	chr1	120980071	120980300	+	0	NA	Intergenic	Intergenic	16537	NR_160532	105369199		NR_160532		LOC105369199	-	NBPF member 6 pseudogene	pseudo
206573	chr7	35681571	35682080	+	0	NA	intron (NM_022373, intron 2 of 8)	L1MB7|LINE|L1	13310	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
174635	chr4	40321921	40322180	+	0	NA	intron (NR_121640, intron 1 of 2)	intron (NR_121640, intron 1 of 2)	5566	NR_121640	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
36059	chr11	2951171	2951880	+	0	NA	intron (NM_001369382, intron 14 of 15).2	intron (NM_001369382, intron 14 of 15).2	12368	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
53309	chr12	64582951	64583250	+	0	NA	Intergenic	Intergenic	-27395	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
209770	chr7	87225821	87226080	+	0	NA	Intergenic	MER21C|LTR|ERVL	-5363	NM_001329473	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
18694	chr1	167429871	167430380	+	0	NA	TTS (NM_001378516)	TTS (NM_001378516)	88404	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
162665	chr3	48918051	48919500	+	0	NA	promoter-TSS (NM_001349213)	promoter-TSS (NM_001349213)	-67	NM_001349230	10425		NM_006321	ENSG00000177479	ARIH2	ARI2|TRIAD1	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding
133513	chr2	120109121	120109830	+	0	NA	intron (NM_020909, intron 16 of 24)	L2a|LINE|L2	96398	NM_001330307	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
128313	chr2	54652601	54652950	+	0	NA	intron (NM_178313, intron 25 of 30)	L1ME4b|LINE|L1	-72237	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
186848	chr5	139456371	139457050	+	0	NA	intron (NM_001293739, intron 4 of 9)	intron (NM_001293739, intron 4 of 9)	6033	NM_001293739	641700		NM_001077693	ENSG00000249751	ECSCR	ARIA|ECSM2	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding
113204	chr19	8448721	8449280	+	0	NA	intron (NM_031203, intron 1 of 16)	intron (NM_031203, intron 1 of 16)	4025	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
226718	chr9	75150851	75150950	+	0	NA	Intergenic	Intergenic	62386	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
123251	chr19	53301401	53301600	+	0	NA	Intergenic	Intergenic	-10066	NR_159880	112401		NM_033341	ENSG00000293247	BIRC8	ILP-2|ILP2|RNF136|hILP2	baculoviral IAP repeat containing 8	pseudo
235125	chrX	40737271	40737430	+	0	NA	intron (NR_169211, intron 1 of 1)	AluSx|SINE|Alu	1660	NR_169211	100873985		NM_001289773		MED14OS	MED14-AS1	MED14 opposite strand	ncRNA
238362	chrX	149909451	149910270	+	0	NA	Intergenic	L1PA7|LINE|L1	-12854	NR_102703	101410537		NR_102703		MAGEA8-AS1	-	MAGEA8 antisense RNA 1	ncRNA
223562	chr8	144260771	144261030	+	0	NA	intron (NM_032450, intron 40 of 43)	intron (NM_032450, intron 40 of 43)	1837	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
83222	chr16	23823601	23824200	+	0	NA	Intergenic	Intergenic	-12083	NM_212535	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
162801	chr3	49106851	49107330	+	0	NA	TTS (NM_001199161)	TTS (NM_001199161)	-2333	NM_001272073	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
156429	chr22	41229501	41230480	+	0	NA	intron (NM_138481, intron 5 of 5)	intron (NM_138481, intron 5 of 5)	10941	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
70864	chr14	103714121	103714380	+	0	NA	intron (NM_001371232, intron 1 of 9)	intron (NM_001371232, intron 1 of 9)	1201	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
28619	chr10	58322501	58322830	+	0	NA	Intergenic	L1MB2|LINE|L1	7014	NR_158219	112268068		NR_158219		LOC112268068	-	uncharacterized LOC112268068	ncRNA
22217	chr1	212514071	212514400	+	0	NA	Intergenic	Intergenic	-31459	NR_125985	101929565		NR_125985	ENSG00000228067	LINC01740	-	long intergenic non-protein coding RNA 1740	ncRNA
124731	chr2	5628251	5628450	+	0	NA	Intergenic	Intergenic	62768	NR_110580	102723818		NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
177509	chr4	118276121	118276580	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2412	NR_034010	100093630		NR_003584	ENSG00000269893	SNHG8	LINC00060|NCRNA00060	small nucleolar RNA host gene 8	ncRNA
198139	chr6	90471371	90471830	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	115472	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
38524	chr11	45895821	45896300	+	0	NA	intron (NM_005456, intron 1 of 11)	L3|LINE|CR1	10409	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
64920	chr14	35422401	35423230	+	0	NA	Intergenic	AluSc|SINE|Alu	-18066	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
96850	chr17	41985671	41986480	+	0	NA	intron (NM_003315, intron 9 of 13)	(A)n|Simple_repeat|Simple_repeat	18278	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
59489	chr13	26482251	26482980	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-75068	NM_006646	10810		NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	WASP family member 3	protein-coding
233885	chrX	1586501	1586700	+	0	NA	Intergenic	AluSg7|SINE|Alu	-5004	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
86688	chr16	67522821	67523080	+	0	NA	intron (NR_104656, intron 1 of 1)	L2a|LINE|L2	5795	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
9711	chr1	53111201	53111400	+	0	NA	intron (NM_001287596, intron 3 of 3)	L2a|LINE|L2	31338	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
24820	chr10	314701	315300	+	0	NA	intron (NM_014974, intron 31 of 36)	intron (NM_014974, intron 31 of 36)	135006	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
16237	chr1	153948701	153948900	+	0	NA	intron (NM_181715, intron 12 of 13)	intron (NM_181715, intron 12 of 13)	-2082	NM_014856	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
199294	chr6	111992701	111993630	+	0	NA	Intergenic	Intergenic	-60939	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
173178	chr4	6718851	6719300	+	0	NA	Intergenic	L2a|LINE|L2	2901	NM_018366	55330		NM_018366	ENSG00000186222	BLOC1S4	BCAS4L|BLOS4|CNO	biogenesis of lysosomal organelles complex 1 subunit 4	protein-coding
221213	chr8	120836451	120836750	+	0	NA	Intergenic	LTR79|LTR|ERVL	-24554	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
92509	chr17	8890801	8891000	+	0	NA	exon (NM_014308, exon 7 of 19)	exon (NM_014308, exon 7 of 19)	21617	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
71202	chr14	105070901	105071830	+	0	NA	Intergenic	AluJb|SINE|Alu	-5935	NM_013345	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
221982	chr8	129997101	129997300	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	11253	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
190517	chr5	180541171	180541780	+	0	NA	promoter-TSS (NM_001370474)	promoter-TSS (NM_001370474)	-179	NM_001370474	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
228283	chr9	98078121	98078580	+	0	NA	intron (NM_018946, intron 4 of 5)	intron (NM_018946, intron 4 of 5)	21618	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
127535	chr2	42324971	42325280	+	0	NA	intron (NM_019063, intron 19 of 22)	intron (NM_019063, intron 19 of 22)	34913	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
214332	chr7	149310151	149310830	+	0	NA	Intergenic	Intergenic	25209	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
29424	chr10	70272771	70273530	+	0	NA	intron (NM_022146, intron 1 of 3)	MER5B|DNA|hAT-Charlie	10854	NM_022146	64106		NM_022146	ENSG00000148734	NPFFR1	GPR147|NPFF1|NPFF1R1|OT7T022	neuropeptide FF receptor 1	protein-coding
98998	chr17	48747071	48747930	+	0	NA	Intergenic	CpG	-18750	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
225208	chr9	34128021	34128450	+	0	NA	Intergenic	Intergenic	-1537	NM_015397	25853		NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
228912	chr9	113065201	113065600	+	0	NA	Intergenic	CpG	-8676	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
202911	chr6	160068821	160069550	+	0	NA	intron (NM_000876, intron 30 of 47)	intron (NM_000876, intron 30 of 47)	-23897	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
224052	chr9	3518251	3518350	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	7701	NM_002919	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
212578	chr7	128917021	128917280	+	0	NA	Intergenic	Intergenic	-6441	NM_199349	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
1573	chr1	3565021	3565550	+	0	NA	intron (NM_001409, intron 4 of 36)	intron (NM_001409, intron 4 of 36)	-4495	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
83714	chr16	28500821	28501080	+	0	NA	intron (NM_145659, intron 4 of 4)	AluSx3|SINE|Alu	5884	NM_145659	246778		NM_145659	ENSG00000197272	IL27	IL-27|IL-27A|IL27A|IL27p28|IL30|p28	interleukin 27	protein-coding
87516	chr16	71872721	71873180	+	0	NA	intron (NM_001318238, intron 4 of 7)	intron (NM_001318238, intron 4 of 7)	7526	NM_001318239	55565		NM_017530	ENSG00000102984	ZNF821	-	zinc finger protein 821	protein-coding
151870	chr22	18658471	18659300	+	0	NA	Intergenic	L1M4|LINE|L1	-46966	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
190760	chr6	473721	473980	+	0	NA	Intergenic	Intergenic	82098	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
138963	chr2	218265701	218266130	+	0	NA	exon (NM_001087, exon 7 of 11)	exon (NM_001087, exon 7 of 11)	4222	NM_001087	14		NM_001087	ENSG00000127837	AAMP	-	angio associated migratory cell protein	protein-coding
124609	chr2	984571	984730	+	0	NA	intron (NM_018968, intron 1 of 16)	intron (NM_018968, intron 1 of 16)	-33258	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
201964	chr6	152172801	152173030	+	0	NA	intron (NM_033071, intron 129 of 145)	MER3|DNA|hAT-Charlie	-4628	NM_001347702	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
151345	chr21	45640051	45640700	+	0	NA	Intergenic	Intergenic	-3350	NM_001382287	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
121089	chr19	45900071	45900230	+	0	NA	intron (NM_001012643, intron 2 of 2)	L2c|LINE|L2	2463	NM_001012643	339344		NM_001012643	ENSG00000176182	MYPOP	P42pop	Myb related transcription factor, partner of profilin	protein-coding
44559	chr11	108199671	108200680	+	0	NA	intron (NM_001321307, intron 1 of 17)	MER52-int|LTR|ERV1	22463	NM_001321307	4863		NM_002519	ENSG00000149308	NPAT	E14|E14/NPAT|p220	nuclear protein, coactivator of histone transcription	protein-coding
21109	chr1	203593621	203594350	+	0	NA	Intergenic	Intergenic	-32802	NM_001001396	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
25101	chr10	3902051	3902850	+	0	NA	Intergenic	Intergenic	68500	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
83675	chr16	28373121	28373700	+	0	NA	Intergenic	AluSc8|SINE|Alu	-10550	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
143397	chr20	29319351	29319450	+	0	NA	Intergenic	Intergenic	97561	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
77441	chr15	84229501	84230430	+	0	NA	non-coding (NR_027001, exon 1 of 7)	non-coding (NR_027001, exon 1 of 7)	171	NR_158192	102724135		NR_158192		LOC102724135	-	uncharacterized LOC102724135	pseudo
56530	chr12	116735871	116736380	+	0	NA	intron (NM_024738, intron 1 of 4)	L2a|LINE|L2	1944	NM_001353625	79794		NM_024738	ENSG00000111412	SPRING1	C12orf49|LUR1|POST1|SPRING	SREBF pathway regulator in golgi 1	protein-coding
160580	chr3	30768651	30769030	+	0	NA	intron (NM_207359, intron 14 of 14)	intron (NM_207359, intron 14 of 14)	125821	NM_207359	339896		NM_207359	ENSG00000144644	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase like 1	protein-coding
25808	chr10	11191471	11191700	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	26555	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
205621	chr7	22488771	22489280	+	0	NA	intron (NM_001164460, intron 4 of 4)	intron (NM_001164460, intron 4 of 4)	11163	NM_001382447	256227		NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
124959	chr2	8676251	8677080	+	0	NA	intron (NR_110154, intron 1 of 3)	CpG	5196	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
128019	chr2	47168521	47169230	+	0	NA	intron (NM_001743, intron 2 of 5)	AluSz|SINE|Alu	5332	NM_001305626	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
157374	chr22	44710501	44711780	+	0	NA	intron (NM_181334, intron 1 of 14)	intron (NM_181334, intron 1 of 14)	8936	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
206240	chr7	29178271	29178450	+	0	NA	intron (NM_001371256, intron 3 of 16)	L2b|LINE|L2	11697	NM_001371262	54504		NM_019029	ENSG00000106066	CPVL	HVLP	carboxypeptidase vitellogenic like	protein-coding
192830	chr6	27130121	27130400	+	0	NA	Intergenic	Intergenic	2535	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
231551	chr9	131480121	131480380	+	0	NA	intron (NM_013318, intron 19 of 31)	intron (NM_013318, intron 19 of 31)	-5415	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
190491	chr5	180350571	180350730	+	0	NA	intron (NM_005110, intron 1 of 18)	intron (NM_005110, intron 1 of 18)	2686	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
131262	chr2	96055901	96056700	+	0	NA	Intergenic	Intergenic	-20326	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
52246	chr12	54410521	54410800	+	0	NA	intron (NR_120486, intron 3 of 3)	AluJb|SINE|Alu	8606	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
141871	chr20	674101	674300	+	0	NA	intron (NM_033129, intron 1 of 1)	intron (NM_033129, intron 1 of 1)	1602	NM_033129	85508		NM_033129	ENSG00000215397	SCRT2	ZNF898B	scratch family transcriptional repressor 2	protein-coding
160669	chr3	32113601	32113800	+	0	NA	intron (NM_015141, intron 1 of 7)	MLT1H|LTR|ERVL-MaLR	7080	NM_015141	23171		NM_015141	ENSG00000152642	GPD1L	GPD1-L	glycerol-3-phosphate dehydrogenase 1 like	protein-coding
156204	chr22	40309201	40309600	+	0	NA	intron (NM_015088, intron 14 of 20)	intron (NM_015088, intron 14 of 20)	-37100	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
59037	chr13	20470901	20471280	+	0	NA	intron (NM_015974, intron 3 of 7)	intron (NM_015974, intron 3 of 7)	-37244	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
223798	chr8	144784771	144785150	+	0	NA	intron (NM_001378027, intron 1 of 6)	AluJb|SINE|Alu	2357	NM_001378029	80778		NM_030580	ENSG00000196378	ZNF34	KOX32	zinc finger protein 34	protein-coding
185514	chr5	131326921	131327500	+	0	NA	intron (NM_001375633, intron 2 of 5)	intron (NM_001375633, intron 2 of 5)	63157	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
106400	chr18	13443601	13443800	+	0	NA	intron (NM_001378099, intron 4 of 6)	(GTC)n|Simple_repeat|Simple_repeat	-16166	NR_040031	100288122		NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
122906	chr19	50568271	50568430	+	0	NA	promoter-TSS (NM_001080457)	promoter-TSS (NM_001080457)	85	NM_001080457	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
24075	chr1	235319101	235319650	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJo|SINE|Alu	-7841	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
113429	chr19	9794201	9794550	+	0	NA	Intergenic	AluSx|SINE|Alu	-1195	NR_148545	100505555		NR_148545	ENSG00000196605	LOC100505555	-	uncharacterized LOC100505555	ncRNA
217982	chr8	38372651	38373380	+	0	NA	intron (NM_017778, intron 1 of 9)	AluSx1|SINE|Alu	9256	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
28311	chr10	46265801	46266680	+	0	NA	intron (NR_103827, intron 1 of 4)	intron (NR_103827, intron 1 of 4)	3368	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
41484	chr11	66221971	66223630	+	0	NA	intron (NM_018026, intron 10 of 23)	intron (NM_018026, intron 10 of 23)	-34494	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
207805	chr7	50299321	50299850	+	0	NA	Intergenic	Intergenic	-4479	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
200962	chr6	139247351	139247830	+	0	NA	intron (NM_153235, intron 8 of 9)	intron (NM_153235, intron 8 of 9)	44408	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
112187	chr19	5668971	5669330	+	0	NA	TTS (NM_001201340)	TTS (NM_001201340)	11088	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
186361	chr5	134873421	134875730	+	0	NA	intron (NM_024715, intron 1 of 4)	CpG	204	NM_024715	79770		NM_024715	ENSG00000113621	TXNDC15	BUG|C5orf14|MKS14|UNQ335	thioredoxin domain containing 15	protein-coding
149069	chr21	15682351	15682450	+	0	NA	Intergenic	L2b|LINE|L2	-47534	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
217213	chr8	26436151	26437080	+	0	NA	Intergenic	Intergenic	46202	NM_001330491	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
6739	chr1	30713201	30714300	+	0	NA	intron (NM_002379, intron 7 of 7)	intron (NM_002379, intron 7 of 7)	-5022	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
91430	chr17	4730851	4732230	+	0	NA	exon (NM_001001683, exon 1 of 3)	exon (NM_001001683, exon 1 of 3)	112	NM_001001683	400569		NM_001001683	ENSG00000161920	MED11	HSPC296|NDDRSB	mediator complex subunit 11	protein-coding
122656	chr19	49860071	49860830	+	0	NA	TTS (NM_007254)	TTS (NM_007254)	-1161	NR_110730	101928378		NR_110730		PTOV1-AS2	-	PTOV1 antisense RNA 2	ncRNA
222150	chr8	132676901	132677100	+	0	NA	Intergenic	Intergenic	-1455	NM_001321966	23639		NM_012472	ENSG00000129295	DNAAF11	CILD19|LRRC6|LRTP|TSLRP|tilB	dynein axonemal assembly factor 11	protein-coding
133132	chr2	112665501	112666030	+	0	NA	Intergenic	Intergenic	19826	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
170936	chr3	194315071	194316050	+	0	NA	Intergenic	Intergenic	-2756	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
36985	chr11	11857721	11858480	+	0	NA	intron (NM_001372101, intron 1 of 26)	MER51A|LTR|ERV1	16128	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
111535	chr19	4026571	4026880	+	0	NA	intron (NM_015897, intron 3 of 10)	AluSz|SINE|Alu	18989	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
130264	chr2	84862801	84863000	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	18184	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
139461	chr2	223939471	223939630	+	0	NA	intron (NM_020830, intron 1 of 11)	THE1B|LTR|ERVL-MaLR	5785	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
20975	chr1	202622971	202623330	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	20303	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
125448	chr2	12063971	12064730	+	0	NA	intron (NR_110196, intron 2 of 5)	L2c|LINE|L2	57234	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
47670	chr12	6336401	6336900	+	0	NA	intron (NR_144351, intron 1 of 8)	intron (NR_144351, intron 1 of 8)	5426	NM_001346091	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
19440	chr1	174726571	174726800	+	0	NA	intron (NM_001366447, intron 17 of 20)	intron (NM_001366447, intron 17 of 20)	25690	NM_001366452	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
84233	chr16	29991651	29992300	+	0	NA	TTS (NM_001197323)	TTS (NM_001197323)	3642	NM_003609	8479		NM_003609	ENSG00000149929	HIRIP3	-	HIRA interacting protein 3	protein-coding
38216	chr11	36407871	36408900	+	0	NA	intron (NM_001160167, intron 3 of 8)	intron (NM_001160167, intron 3 of 8)	7388	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
192054	chr6	16519351	16519850	+	0	NA	intron (NM_000332, intron 6 of 8)	intron (NM_000332, intron 6 of 8)	240584	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
27143	chr10	28304201	28304400	+	0	NA	Intergenic	Intergenic	-1236	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
143073	chr20	21521871	21522030	+	0	NA	Intergenic	CpG	-7886	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
54410	chr12	90091001	90091900	+	0	NA	Intergenic	Intergenic	143757	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
78426	chr15	92697031	92697230	+	0	NA	Intergenic	Intergenic	-41355	NM_207446	400451		NM_207446	ENSG00000185442	FAM174B	-	family with sequence similarity 174 member B	protein-coding
117089	chr19	19140771	19141500	+	0	NA	Intergenic	AluJb|SINE|Alu	-2657	NM_001256766	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
87712	chr16	74998301	74999500	+	0	NA	promoter-TSS (NM_032268)	promoter-TSS (NM_032268)	-124	NM_032268	84937		NM_032268	ENSG00000186187	ZNRF1	NIN283	zinc and ring finger 1	protein-coding
218833	chr8	59209721	59209980	+	0	NA	Intergenic	L1PA16|LINE|L1	90640	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
100069	chr17	58215951	58216250	+	0	NA	exon (NM_001330397, exon 4 of 16)	exon (NM_001330397, exon 4 of 16)	3155	NM_001321269	54903		NM_017777	ENSG00000011143	MKS1	BBS13|JBTS28|MES|MKS|POC12	MKS transition zone complex subunit 1	protein-coding
230067	chr9	127441851	127442500	+	0	NA	intron (NM_001322260, intron 5 of 5)	AluSq2|SINE|Alu	6462	NR_002449	26783		NR_002449	ENSG00000201302	SNORA65	RNU65|U65	small nucleolar RNA, H/ACA box 65	snoRNA
220984	chr8	115435651	115435950	+	0	NA	intron (NM_001282903, intron 5 of 6)	MARNA|DNA|TcMar-Mariner	232213	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
42686	chr11	72613901	72614300	+	0	NA	TTS (NR_029603)	TTS (NR_029603)	1030	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
22709	chr1	224113891	224115080	+	0	NA	intron (NR_049764, intron 1 of 3)	CpG	374	NR_049764	23219		NM_015176	ENSG00000143756	FBXO28	CENP-30|DEE100|Fbx28	F-box protein 28	protein-coding
75403	chr15	65763071	65763680	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	28918	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
204103	chr7	2138321	2139180	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-49698	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
146084	chr20	47542971	47543600	+	0	NA	intron (NM_181659, intron 1 of 22)	MLT1F1|LTR|ERVL-MaLR	41398	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
237504	chrX	119991671	119991830	+	0	NA	Intergenic	Intergenic	23801	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
88803	chr16	87395401	87395650	+	0	NA	intron (NM_022818, intron 1 of 3)	intron (NM_022818, intron 1 of 3)	3189	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
85826	chr16	56996401	56996600	+	0	NA	intron (NR_169520, intron 1 of 47)	MER113|DNA|hAT-Charlie	6943	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
14844	chr1	146371151	146371550	+	0	NA	Intergenic	MER72|LTR|ERV1	-5457	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
30653	chr10	80471711	80472800	+	0	NA	intron (NM_001351272, intron 2 of 9)	L1MC4|LINE|L1	4014	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
120528	chr19	44892521	44892980	+	0	NA	intron (NM_001128916, intron 3 of 9)	intron (NM_001128916, intron 3 of 9)	1496	NM_001128917	10452		NM_006114	ENSG00000130204	TOMM40	C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40	translocase of outer mitochondrial membrane 40	protein-coding
53601	chr12	68040401	68040950	+	0	NA	Intergenic	Intergenic	51230	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
74697	chr15	62390171	62390980	+	0	NA	Intergenic	(CGGCGG)n|Simple_repeat|Simple_repeat	47546	NR_106733	102464834		NR_106733	ENSG00000275451	MIR6085	hsa-mir-6085	microRNA 6085	ncRNA
169547	chr3	170178201	170179080	+	0	NA	intron (NM_001308116, intron 2 of 14)	MSTD|LTR|ERVL-MaLR	3093	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
207661	chr7	45084671	45085250	+	0	NA	exon (NM_001146334, exon 2 of 8)	exon (NM_001146334, exon 2 of 8)	4009	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
139790	chr2	230255971	230256130	+	0	NA	intron (NM_001278453, intron 9 of 23)	intron (NM_001278453, intron 9 of 23)	30314	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
59814	chr13	30398471	30398830	+	0	NA	Intergenic	Intergenic	23594	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
210681	chr7	100559471	100560630	+	0	NA	intron (NM_006076, intron 6 of 11)	intron (NM_006076, intron 6 of 11)	13850	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
136593	chr2	178412301	178412500	+	0	NA	Intergenic	Intergenic	-1259	NR_110205	101927027		NR_110204	ENSG00000223960	CHROMR	CHROME|PRKRA-AS1	cholesterol induced regulator of metabolism RNA	ncRNA
100363	chr17	60027151	60027730	+	0	NA	Intergenic	Intergenic	-8388	NR_002924	653645		NR_002924	ENSG00000267104	TBC1D3P1-DHX40P1	DHX40P|DHX40P1|TBC1D3P1	TBC1D3P1-DHX40P1 readthrough, transcribed pseudogene	pseudo
117383	chr19	19592621	19593250	+	0	NA	intron (NM_025245, intron 2 of 7)	intron (NM_025245, intron 2 of 7)	25752	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
40585	chr11	64377421	64377680	+	0	NA	Intergenic	Intergenic	8948	NR_031602	100302280		NR_031602	ENSG00000221273	MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	ncRNA
11012	chr1	84700271	84700430	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-9882	NM_001166295	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
93208	chr17	17823391	17824610	+	0	NA	promoter-TSS (NM_001321096)	promoter-TSS (NM_001321096)	-370	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
151608	chr22	11825071	11825530	+	0	NA	Intergenic	TAR1|Satellite|telo	-72106	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
33978	chr10	124659501	124660550	+	0	NA	intron (NM_014661, intron 4 of 4)	AluSz|SINE|Alu	-44003	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
158405	chr22	50522771	50523550	+	0	NA	TTS (NM_005138)	TTS (NM_005138)	2438	NM_005138	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
143379	chr20	28071671	28071900	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	530880	NR_132315	100289097		NR_132315	ENSG00000282826	FRG1CP	-	FSHD region gene 1 family member C, pseudogene	pseudo
131036	chr2	88187151	88187330	+	0	NA	TTS (NM_001244678)	TTS (NM_001244678)	16894	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
102065	chr17	74920251	74920430	+	0	NA	exon (NM_001282489, exon 2 of 3)	exon (NM_001282489, exon 2 of 3)	2915	NM_173477	124590		NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	USH1 protein network component sans	protein-coding
154088	chr22	30940371	30941880	+	0	NA	intron (NM_014941, intron 10 of 26)	intron (NM_014941, intron 10 of 26)	18817	NR_026920	150291		NM_153044	ENSG00000235989	MORC2-AS1	C22orf27|NCRNA00325	MORC2 antisense RNA 1	ncRNA
146317	chr20	49216201	49216400	+	0	NA	intron (NM_001319135, intron 1 of 14)	AluSx1|SINE|Alu	2995	NM_001319135	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
228859	chr9	112326951	112327250	+	0	NA	intron (NM_001375918, intron 1 of 13)	AluJb|SINE|Alu	5926	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
60875	chr13	46106921	46107280	+	0	NA	Intergenic	L1MEi|LINE|L1	-2024	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
175995	chr4	81789821	81790280	+	0	NA	Intergenic	Intergenic	-318143	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
213444	chr7	138717601	138718500	+	0	NA	intron (NM_130840, intron 18 of 20)	intron (NM_130840, intron 18 of 20)	-16688	NM_001139456	136306		NM_174959	ENSG00000157703	SVOPL	SLC22B5	SVOP like	protein-coding
47521	chr12	4148201	4148830	+	0	NA	Intergenic	MIR3|SINE|MIR	-125247	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
176040	chr4	82371271	82371930	+	0	NA	intron (NM_002138, intron 1 of 7)	intron (NM_002138, intron 1 of 7)	2391	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
151958	chr22	19131771	19131930	+	0	NA	non-coding (NR_134304, exon 10 of 10)	non-coding (NR_134304, exon 10 of 10)	542	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
115693	chr19	16199501	16200200	+	0	NA	intron (NM_001130524, intron 1 of 12)	L2b|LINE|L2	1939	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
15185	chr1	149161521	149161780	+	0	NA	Intergenic	Intergenic	39496	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
155613	chr22	38845301	38845780	+	0	NA	Intergenic	Intergenic	-1512	NM_014293	23467		NM_014293	ENSG00000221890	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
169825	chr3	177138921	177139800	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluSx|SINE|Alu	57118	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
48742	chr12	10719371	10719830	+	0	NA	intron (NM_003651, intron 1 of 9)	intron (NM_003651, intron 1 of 9)	3723	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
234863	chrX	25015621	25017250	+	0	NA	promoter-TSS (NM_139058)	promoter-TSS (NM_139058)	-470	NM_139058	170302		NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
67773	chr14	73739421	73739850	+	0	NA	exon (NM_194278, exon 2 of 12)	exon (NM_194278, exon 2 of 12)	-19112	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
149363	chr21	29305021	29305480	+	0	NA	promoter-TSS (NR_027655)	promoter-TSS (NR_027655)	46	NR_027655	571		NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding
223766	chr8	144529971	144530700	+	0	NA	3' UTR (NM_001308208, exon 11 of 11)	3' UTR (NM_001308208, exon 11 of 11)	-1224	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
124812	chr2	7572371	7572800	+	0	NA	Intergenic	Intergenic	151324	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
237165	chrX	107654771	107655600	+	0	NA	Intergenic	Intergenic	26675	NM_002764	5631		NM_002764	ENSG00000147224	PRPS1	ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI	phosphoribosyl pyrophosphate synthetase 1	protein-coding
17279	chr1	156424521	156425350	+	0	NA	intron (NR_168071, intron 2 of 4)	intron (NR_168071, intron 2 of 4)	-3166	NR_135268	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
198248	chr6	99418971	99419430	+	0	NA	intron (NM_001322406, intron 1 of 12)	L1MC5a|LINE|L1	-5671	NR_125843	101927365		NR_125843		PNISR-AS1	-	PNISR antisense RNA 1	ncRNA
33741	chr10	122407301	122408100	+	0	NA	intron (NM_001377250, intron 5 of 12)	intron (NM_001377250, intron 5 of 12)	-9265	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
87224	chr16	69565211	69567680	+	0	NA	promoter-TSS (NR_031719)	promoter-TSS (NR_031719)	479	NM_173215	10725		NM_006599	ENSG00000102908	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T cells 5	protein-coding
7548	chr1	34982971	34983330	+	0	NA	intron (NM_001195156, intron 2 of 2)	intron (NM_001195156, intron 2 of 2)	2197	NM_001195156	100506144		NM_001195156	ENSG00000243749	TMEM35B	ZMYM6NB	transmembrane protein 35B	protein-coding
30334	chr10	77251351	77251450	+	0	NA	intron (NM_001271518, intron 1 of 27)	intron (NM_001271518, intron 1 of 27)	99361	NM_001322838	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
152923	chr22	22786451	22786550	+	0	NA	Intergenic	(GGCCT)n|Simple_repeat|Simple_repeat	-36276	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
90451	chr17	1372771	1373130	+	0	NA	intron (NR_024058, intron 1 of 6)	Tigger1|DNA|TcMar-Tigger	27272	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
8888	chr1	43763371	43763780	+	0	NA	intron (NM_001270463, intron 2 of 7)	intron (NM_001270463, intron 2 of 7)	-36232	NR_125986	101929592		NR_125986	ENSG00000229444	ST3GAL3-AS1	-	ST3GAL3 antisense RNA 1	ncRNA
145052	chr20	38429001	38429650	+	0	NA	TTS (NR_003017)	TTS (NR_003017)	479	NR_003017	677839		NR_003017	ENSG00000201512	SNORA71C	U71c	small nucleolar RNA, H/ACA box 71C	snoRNA
155714	chr22	39116801	39117100	+	0	NA	Intergenic	MER4E1|LTR|ERV1	19706	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
115794	chr19	16374201	16374850	+	0	NA	intron (NR_047665, intron 21 of 22)	Tigger15a|DNA|TcMar-Tigger	49699	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
76804	chr15	77032901	77033100	+	0	NA	intron (NM_001321136, intron 13 of 15)	intron (NM_001321136, intron 13 of 15)	37874	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
48308	chr12	8996521	8997750	+	0	NA	intron (NM_005810, intron 3 of 4)	intron (NM_005810, intron 3 of 4)	7510	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
167915	chr3	136167771	136168130	+	0	NA	intron (NM_018133, intron 1 of 1)	intron (NM_018133, intron 1 of 1)	26518	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
162350	chr3	47814171	47814330	+	0	NA	intron (NM_014966, intron 3 of 22)	AluSz|SINE|Alu	11112	NR_075079	22907		NM_014966	ENSG00000132153	DHX30	DDX30|NEDMIAL|RETCOR	DExH-box helicase 30	protein-coding
80797	chr16	3285171	3285550	+	0	NA	intron (NM_005741, intron 2 of 5)	intron (NM_005741, intron 2 of 5)	1869	NM_005741	10127		NM_005741	ENSG00000006194	ZNF263	FPM315|ZKSCAN12|ZSCAN44	zinc finger protein 263	protein-coding
199972	chr6	127977151	127977700	+	0	NA	intron (NM_001291981, intron 28 of 32).2	intron (NM_001291981, intron 28 of 32).2	-50440	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
144208	chr20	34336021	34336880	+	0	NA	Intergenic	AluSg|SINE|Alu	-24648	NM_001161766	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
46729	chr11	128908671	128908830	+	0	NA	intron (NM_000890, intron 1 of 2)	intron (NM_000890, intron 1 of 2)	-2519	NR_045767	219833		NM_145013	ENSG00000174370	KCNJ5-AS1	C11orf45	KCNJ5 antisense RNA 1	ncRNA
90110	chr16	90081961	90083200	+	0	NA	Intergenic	Intergenic	-5249	NM_001098173	11105		NM_052996	ENSG00000126856	PRDM7	PFM4|ZNF910	PR/SET domain 7	protein-coding
69478	chr14	95442521	95443200	+	0	NA	intron (NM_001363692, intron 11 of 17)	L2a|LINE|L2	57680	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
17759	chr1	159021951	159022050	+	0	NA	intron (NM_001376587, intron 6 of 11)	AluYk3|SINE|Alu	12093	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
223284	chr8	143738451	143738880	+	0	NA	intron (NM_001381874, intron 2 of 13)	CpG	4526	NM_001381874	642574		NM_001381874	ENSG00000203499	IQANK1	CACClnc|FAM83H-AS1|FAM83HAS1|onco-lncRNA-3	IQ motif and ankyrin repeat containing 1	protein-coding
94769	chr17	30830151	30830580	+	0	NA	Intergenic	AluSx|SINE|Alu	-1601	NM_024857	79915		NM_024857	ENSG00000176208	ATAD5	C17orf41|ELG1|FRAG1	ATPase family AAA domain containing 5	protein-coding
66456	chr14	61548271	61548830	+	0	NA	intron (NM_006255, intron 13 of 13)	intron (NM_006255, intron 13 of 13)	21644	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
63798	chr14	21365671	21366030	+	0	NA	intron (NM_007192, intron 8 of 25)	AluJo|SINE|Alu	18169	NM_007192	11198		NM_007192	ENSG00000092201	SUPT16H	CDC68|FACTP140|NEDDFAC|SPT16|SPT16/CDC68	SPT16 homolog, facilitates chromatin remodeling subunit	protein-coding
129629	chr2	70130121	70130630	+	0	NA	Intergenic	AluSc|SINE|Alu	-5059	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
67253	chr14	69002101	69002300	+	0	NA	Intergenic	Intergenic	22518	NR_073422	161159		NR_073422	ENSG00000259062	ACTN1-DT	ACTN1-AS1|C14orf84	ACTN1 divergent transcript	ncRNA
77057	chr15	78876371	78876550	+	0	NA	intron (NM_001265604, intron 1 of 11)	intron (NM_001265604, intron 1 of 11)	3471	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
127427	chr2	42135151	42135580	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-33988	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
94538	chr17	29578601	29578800	+	0	NA	intron (NM_001085454, intron 9 of 20)	intron (NM_001085454, intron 9 of 20)	9999	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
193101	chr6	28900171	28900330	+	0	NA	Intergenic	L1MC5|LINE|L1	3720	NR_104117	414760		NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14	ncRNA
139338	chr2	219570821	219572130	+	0	NA	promoter-TSS (NM_002191)	promoter-TSS (NM_002191)	64	NM_001173408	23363		NM_015311	ENSG00000124006	OBSL1	-	obscurin like cytoskeletal adaptor 1	protein-coding
62050	chr13	91346171	91346330	+	0	NA	Intergenic	Intergenic	-1570	NR_027349	407975		NM_213723	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA
106622	chr18	22363851	22364150	+	0	NA	Intergenic	L2a|LINE|L2	53915	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
88071	chr16	81472721	81473430	+	0	NA	intron (NM_198390, intron 1 of 20)	MIR|SINE|MIR	-22279	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
226273	chr9	68304451	68304550	+	0	NA	3' UTR (NM_199135, exon 1 of 1)	3' UTR (NM_199135, exon 1 of 1)	1633	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
84315	chr16	30120201	30120800	+	0	NA	intron (NM_001040056, intron 2 of 6)	intron (NM_001040056, intron 2 of 6)	2720	NM_001040056	5595		NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
71523	chr14	106163651	106164250	+	0	NA	Intergenic	MER65A|LTR|ERV1	-123724	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
203262	chr6	169669971	169670130	+	0	NA	intron (NR_146876, intron 5 of 15)	intron (NR_146876, intron 5 of 15)	31979	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
211303	chr7	103313921	103314180	+	0	NA	3' UTR (NM_004279, exon 13 of 13)	3' UTR (NM_004279, exon 13 of 13)	16615	NM_004279	9512		NM_004279	ENSG00000105819	PMPCB	Beta-MPP|MAS1|MPP11|MPPB|MPPP52|P-52	peptidase, mitochondrial processing subunit beta	protein-coding
160856	chr3	33117001	33117400	+	0	NA	intron (NM_006371, intron 1 of 6)	intron (NM_006371, intron 1 of 6)	3186	NM_006371	10491		NM_006371	ENSG00000170275	CRTAP	CASP|LEPREL3|OI7|P3H5	cartilage associated protein	protein-coding
37993	chr11	35044771	35045930	+	0	NA	Intergenic	Intergenic	92682	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
200134	chr6	130259171	130259330	+	0	NA	intron (NM_001258275, intron 2 of 13)	MSTB1|LTR|ERVL-MaLR	-36299	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
103551	chr17	78665811	78666980	+	0	NA	Intergenic	LTR44|LTR|ERV1	-34338	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
37822	chr11	33065251	33065900	+	0	NA	intron (NM_001145541, intron 7 of 9)	MIRb|SINE|MIR	-10575	NR_015451	283267		NR_015451	ENSG00000280798	LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	ncRNA
132352	chr2	105747471	105747630	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	2487	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
146811	chr20	51306651	51307100	+	0	NA	Intergenic	Intergenic	146102	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
213050	chr7	131055301	131056150	+	0	NA	intron (NR_109852, intron 2 of 5)	L2|LINE|L2	51305	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
238530	chrX	153694551	153695200	+	0	NA	exon (NM_001142805, exon 12 of 13)	exon (NM_001142805, exon 12 of 13)	5364	NM_001142806	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
223330	chr8	143824821	143825080	+	0	NA	intron (NM_078480, intron 1 of 11)	intron (NM_078480, intron 1 of 11)	4091	NM_001362896	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
176454	chr4	89297971	89299700	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	8965	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
6702	chr1	29181121	29183030	+	0	NA	promoter-TSS (NM_005626)	promoter-TSS (NM_005626)	-175	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
24493	chr1	244396171	244396330	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	43615	NM_001276349	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
51518	chr12	52233271	52233430	+	0	NA	exon (NM_005556, exon 1 of 9)	exon (NM_005556, exon 1 of 9)	107	NM_005556	3855		NM_005556	ENSG00000135480	KRT7	CK7|K2C7|K7|SCL	keratin 7	protein-coding
194477	chr6	33212501	33212700	+	0	NA	3' UTR (NM_002931, exon 7 of 7).4	3' UTR (NM_002931, exon 7 of 7).4	4100	NM_002931	6015		NM_002931	ENSG00000204227	RING1	RING1A|RNF1	ring finger protein 1	protein-coding
16551	chr1	154964371	154964600	+	0	NA	intron (NM_001130041, intron 12 of 12)	intron (NM_001130041, intron 12 of 12)	-2703	NM_138300	90780		NM_138300	ENSG00000163348	PYGO2	1190004M21Rik	pygopus family PHD finger 2	protein-coding
146536	chr20	49955071	49955430	+	0	NA	Intergenic	L2a|LINE|L2	18853	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
141399	chr2	240848221	240849300	+	0	NA	Intergenic	Intergenic	-20064	NM_000030	189		NM_000030	ENSG00000172482	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|Ser-PyrAT|TLH6	alanine--glyoxylate aminotransferase	protein-coding
174756	chr4	47122771	47122930	+	0	NA	intron (NM_000812, intron 3 of 8)	LTR50|LTR|ERVL	91283	NM_000812	2560		NM_000812	ENSG00000163288	GABRB1	DEE45|EIEE45	gamma-aminobutyric acid type A receptor subunit beta1	protein-coding
99155	chr17	49360801	49361700	+	0	NA	promoter-TSS (NR_110884)	promoter-TSS (NR_110884)	85	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
215318	chr7	157346701	157347830	+	0	NA	intron (NM_001363676, intron 1 of 6)	intron (NM_001363676, intron 1 of 6)	10261	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
8358	chr1	40282571	40282730	+	0	NA	intron (NM_005857, intron 7 of 9)	MIRb|SINE|MIR	24414	NM_005857	10269		NM_005857	ENSG00000084073	ZMPSTE24	FACE-1|FACE1|HGPS|PRO1|RSDM1|STE24|Ste24p	zinc metallopeptidase STE24	protein-coding
51382	chr12	51871121	51871380	+	0	NA	Intergenic	Intergenic	-16853	NM_182608	341405		NM_182608	ENSG00000167612	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
156810	chr22	41926701	41927600	+	0	NA	promoter-TSS (NM_052945)	promoter-TSS (NM_052945)	-344	NM_052945	115650		NM_052945	ENSG00000159958	TNFRSF13C	BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin	TNF receptor superfamily member 13C	protein-coding
133964	chr2	130599251	130599350	+	0	NA	5' UTR (NM_001270421, exon 1 of 4)	5' UTR (NM_001270421, exon 1 of 4)	275	NM_001270421	55997		NM_032545	ENSG00000136698	CFC1	CFC1B|CRYPTIC|DTGA2|HTX2	cryptic, EGF-CFC family member 1	protein-coding
116890	chr19	18693151	18693450	+	0	NA	intron (NM_015321, intron 1 of 13)	AluSc|SINE|Alu	9620	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
123087	chr19	51407571	51408050	+	0	NA	Intergenic	MIR3|SINE|MIR	-7914	NR_164125	100129083		NR_164124		SIGLEC10-AS1	-	SIGLEC10 antisense RNA 1	ncRNA
186438	chr5	136062401	136062800	+	0	NA	intron (NM_000358, intron 15 of 16)	intron (NM_000358, intron 15 of 16)	17998	NR_030583	100126299		NR_030583	ENSG00000270123	VTRNA2-1	CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a	vault RNA 2-1	ncRNA
217495	chr8	29052771	29053130	+	0	NA	non-coding (NR_136758, exon 11 of 11)	non-coding (NR_136758, exon 11 of 11)	161636	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
173236	chr4	6925351	6926180	+	0	NA	intron (NM_020773, intron 2 of 13)	intron (NM_020773, intron 2 of 13)	15939	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
35716	chr11	1943221	1943850	+	0	NA	Intergenic	(TGAA)n|Simple_repeat|Simple_repeat	-3797	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
25607	chr10	8063701	8064230	+	0	NA	intron (NM_002051, intron 3 of 5)	intron (NM_002051, intron 3 of 5)	9277	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
201513	chr6	149075671	149076030	+	0	NA	3' UTR (NM_005715, exon 8 of 8)	3' UTR (NM_005715, exon 8 of 8)	-43189	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
163130	chr3	50133171	50133730	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-21608	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
45242	chr11	117978971	117979280	+	0	NA	Intergenic	Intergenic	-7269	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
123314	chr19	53576871	53577230	+	0	NA	exon (NM_001253801, exon 5 of 5)	exon (NM_001253801, exon 5 of 5)	21743	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
138514	chr2	207239101	207239500	+	0	NA	promoter-TSS (NR_146555)	promoter-TSS (NR_146555)	-511	NR_146555	105373853		NR_146555	ENSG00000229647	MYOSLID	-	myocardin-induced smooth muscle lncRNA, inducer of differentiation	ncRNA
231928	chr9	133113501	133113700	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	7640	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
100110	chr17	58329411	58329900	+	0	NA	promoter-TSS (NR_038413)	promoter-TSS (NR_038413)	50	NR_038413	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
214689	chr7	150976871	150977230	+	0	NA	intron (NM_172056, intron 1 of 8)	intron (NM_172056, intron 1 of 8)	1264	NM_172056	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
52074	chr12	54041121	54041550	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	7385	NR_030753	693200		NR_030753	ENSG00000207571	MIR615	MIRN615|hsa-mir-615|mir-615	microRNA 615	ncRNA
23182	chr1	226884021	226884550	+	0	NA	intron (NM_012486, intron 5 of 12)	MIR3|SINE|MIR	13669	NM_000447	5664		NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2	protein-coding
12469	chr1	107865751	107865850	+	0	NA	intron (NM_006113, intron 2 of 26)	MER50B|LTR|ERV1	-31423	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
200616	chr6	136771271	136771830	+	0	NA	intron (NM_005923, intron 1 of 29)	MER66B|LTR|ERV1	-12497	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
189813	chr5	176962621	176962900	+	0	NA	intron (NM_001317961, intron 6 of 14)	SVA_F|Retroposon|SVA	43682	NM_016290	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
31688	chr10	97501371	97501930	+	0	NA	intron (NM_024954, intron 1 of 2)	intron (NM_024954, intron 1 of 2)	2726	NM_024954	80019		NM_024954	ENSG00000165886	UBTD1	-	ubiquitin domain containing 1	protein-coding
54858	chr12	95498051	95498350	+	0	NA	intron (NM_006838, intron 7 of 10)	AluJo|SINE|Alu	24048	NM_001317183	10988		NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
219941	chr8	88327401	88327700	+	0	NA	promoter-TSS (NM_005941)	promoter-TSS (NM_005941)	-67	NM_005941	4325		NM_005941	ENSG00000156103	MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16	protein-coding
211009	chr7	102328971	102329350	+	0	NA	Intergenic	AluSx3|SINE|Alu	27284	NM_001146210	729597		NM_001146210	ENSG00000260097	SPDYE6	-	speedy/RINGO cell cycle regulator family member E6	protein-coding
131584	chr2	96845471	96845830	+	0	NA	Intergenic	AluSp|SINE|Alu	-1629	NM_144994	200539		NM_144994	ENSG00000163126	ANKRD23	DARP|MARP3	ankyrin repeat domain 23	protein-coding
107235	chr18	37253671	37254230	+	0	NA	intron (NR_148519, intron 10 of 12)	CpG-12487	-20510	NR_134588	105372068		NR_134588	ENSG00000267202	LOC105372068	-	uncharacterized LOC105372068	ncRNA
70374	chr14	101896271	101896630	+	0	NA	intron (NM_178587, intron 8 of 11)	L1MB4|LINE|L1	-68123	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
205508	chr7	18189071	18189850	+	0	NA	intron (NM_001321868, intron 2 of 25)	L1PA8A|LINE|L1	-62151	NR_031635	100302140		NR_031635	ENSG00000221393	MIR1302-6	MIRN1302-6|hsa-mir-1302-6	microRNA 1302-6	ncRNA
192440	chr6	24895821	24896430	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	14609	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
208583	chr7	72912671	72913030	+	0	NA	intron (NM_172020, intron 2 of 13)	L2c|LINE|L2	22223	NM_172020	9883		NM_014833	ENSG00000196313	POM121	P145|POM121A	POM121 transmembrane nucleoporin	protein-coding
104061	chr17	80160801	80161400	+	0	NA	Intergenic	MER66D|LTR|ERV1	-8930	NM_001366385	79092		NM_024110	ENSG00000141527	CARD14	BIMP2|CARMA2|PRP|PSORS2|PSS1	caspase recruitment domain family member 14	protein-coding
54151	chr12	76556171	76556980	+	0	NA	intron (NM_001319652, intron 1 of 25)	intron (NM_001319652, intron 1 of 25)	3196	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
214560	chr7	150566621	150567780	+	0	NA	promoter-TSS (NM_001363532)	promoter-TSS (NM_001363532)	-170	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
78648	chr15	94274651	94274950	+	0	NA	intron (NR_169532, intron 1 of 23)	L1M5|LINE|L1	43239	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
229644	chr9	124238621	124239680	+	0	NA	Intergenic	Intergenic	-18456	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
141093	chr2	238379201	238379670	+	0	NA	intron (NM_001139490, intron 13 of 14)	intron (NM_001139490, intron 13 of 14)	-47492	NM_001040445	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
64422	chr14	24183921	24185400	+	0	NA	non-coding (NR_051979, exon 16 of 30)	non-coding (NR_051979, exon 16 of 30)	4156	NM_024658	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
232704	chr9	136549851	136550180	+	0	NA	TTS (NR_121577)	TTS (NR_121577)	2173	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
169792	chr3	174217001	174217200	+	0	NA	intron (NM_001365925, intron 4 of 6)	MLT1C|LTR|ERVL-MaLR	-296304	NR_046664	100874010		NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA
186867	chr5	139481501	139483480	+	0	NA	intron (NM_198282, intron 1 of 7)	intron (NM_198282, intron 1 of 7)	268	NM_001367258	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
178255	chr4	143533351	143533450	+	0	NA	intron (NM_003601, intron 9 of 23)	L1ME3A|LINE|L1	-18563	NR_104027	100128055		NR_104027	ENSG00000245112	SMARCA5-AS1	-	SMARCA5 antisense RNA 1	ncRNA
73289	chr15	41867401	41868050	+	0	NA	intron (NM_016642, intron 34 of 67)	intron (NM_016642, intron 34 of 67)	-1174	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
232953	chr9	136947151	136947400	+	0	NA	TTS (NM_000606)	TTS (NM_000606)	2032	NM_000606	733		NM_000606	ENSG00000176919	C8G	C8C	complement C8 gamma chain	protein-coding
70	chr1	284001	284250	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-77528	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
101885	chr17	74328821	74329830	+	0	NA	intron (NM_153209, intron 2 of 19)	AluSc8|SINE|Alu	3099	NM_153209	124602		NM_153209	ENSG00000196169	KIF19	KIF19A	kinesin family member 19	protein-coding
47409	chr12	2885151	2885830	+	0	NA	exon (NM_001257098, exon 2 of 3)	exon (NM_001257098, exon 2 of 3)	-5401	NM_001160408	7289		NM_003324	ENSG00000078246	TULP3	HRCDF|TUBL3	TUB like protein 3	protein-coding
111902	chr19	4682521	4682830	+	0	NA	intron (NM_001384628, intron 20 of 21)	intron (NM_001384628, intron 20 of 21)	3393	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
65162	chr14	49579871	49580250	+	0	NA	intron (NM_001030001, intron 2 of 2)	intron (NM_001030001, intron 2 of 2)	6320	NM_001032	6235		NM_001032	ENSG00000213741	RPS29	DBA13|S29|uS14	ribosomal protein S29	protein-coding
149110	chr21	17514571	17514730	+	0	NA	intron (NM_001207065, intron 1 of 2)	AluSp|SINE|Alu	1607	NM_001207064	1525		NM_001338	ENSG00000154639	CXADR	CAR|CAR4/6|HCAR	CXADR Ig-like cell adhesion molecule	protein-coding
175482	chr4	73143171	73143330	+	0	NA	intron (NM_032217, intron 11 of 33)	intron (NM_032217, intron 11 of 33)	-73491	NM_001300729	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
187923	chr5	148853751	148854250	+	0	NA	Intergenic	L2a|LINE|L2	27389	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
85051	chr16	31951851	31952500	+	0	NA	Intergenic	Intergenic	78368	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
81059	chr16	4323721	4325430	+	0	NA	TTS (NR_110901)	TTS (NR_110901)	3765	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
43427	chr11	77548271	77548630	+	0	NA	Intergenic	Intergenic	-22639	NR_130930	646029		NM_001039908		LINC03030	-	long intergenic non-protein coding RNA 3030	ncRNA
93186	chr17	17804771	17805250	+	0	NA	intron (NM_030665, intron 4 of 5)	AluSc|SINE|Alu	8535	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
232603	chr9	136429251	136429600	+	0	NA	3' UTR (NM_019892, exon 10 of 10)	3' UTR (NM_019892, exon 10 of 10)	10420	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
229743	chr9	125125651	125126900	+	0	NA	intron (NM_173690, intron 2 of 18)	MLT1F1|LTR|ERVL-MaLR	17253	NM_173690	286205		NM_173690	ENSG00000173611	SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
108815	chr18	78647001	78647230	+	0	NA	Intergenic	MER76|LTR|ERVL	-333160	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
130786	chr2	86850401	86850600	+	0	NA	intron (NM_172213, intron 3 of 5)	MIRb|SINE|MIR	-11325	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
226540	chr9	72347371	72347530	+	0	NA	Intergenic	AluSx|SINE|Alu	17106	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
86887	chr16	67995401	67996230	+	0	NA	intron (NM_022355, intron 1 of 10)	AluSx|SINE|Alu	-1524	NM_001324159	64174		NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
66305	chr14	61404671	61405430	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	83607	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
73938	chr15	51622101	51623380	+	0	NA	promoter-TSS (NM_001378463)	promoter-TSS (NM_001378463)	31	NM_001378463	23312		NM_015263	ENSG00000104093	DMXL2	DEE81|DFNA71|EIEE81|PEPNS|RC3	Dmx like 2	protein-coding
159111	chr3	12583001	12583400	+	0	NA	TTS (NM_001354689)	TTS (NM_001354689)	-22201	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
119191	chr19	39432171	39432500	+	0	NA	TTS (NM_001321111)	TTS (NM_001321111)	3614	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
143346	chr20	25856171	25856530	+	0	NA	Intergenic	SST1|Satellite|centr	-2329	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
214717	chr7	151012351	151012450	+	0	NA	exon (NM_000603, exon 24 of 27)	exon (NM_000603, exon 24 of 27)	12099	NM_001317056	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
83503	chr16	27440251	27440350	+	0	NA	intron (NM_181078, intron 4 of 8)	AluJr|SINE|Alu	13029	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
111652	chr19	4204171	4204900	+	0	NA	intron (NM_133475, intron 7 of 21)	intron (NM_133475, intron 7 of 21)	21181	NM_133475	170961		NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
118203	chr19	35140921	35141980	+	0	NA	intron (NM_001278717, intron 4 of 7)	CpG	-1805	NM_022006	53822		NM_022006	ENSG00000221946	FXYD7	-	FXYD domain containing ion transport regulator 7	protein-coding
221778	chr8	127931351	127931450	+	0	NA	intron (NR_003367, intron 2 of 8)	intron (NR_003367, intron 2 of 8)	17323	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
115288	chr19	14567871	14568480	+	0	NA	intron (NM_004146, intron 1 of 2)	AluSx1|SINE|Alu	3891	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
79062	chr16	142271	142430	+	0	NA	Intergenic	Intergenic	-3652	NM_001243249	8131		NM_012075	ENSG00000103148	NPRL3	C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11	NPR3 like, GATOR1 complex subunit	protein-coding
183646	chr5	80250401	80250850	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluSg|SINE|Alu	5423	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
212707	chr7	129779311	129780760	+	0	NA	Intergenic	CpG	-5021	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
155863	chr22	39478401	39478850	+	0	NA	intron (NM_002409, intron 1 of 1)	intron (NM_002409, intron 1 of 1)	-1803	NR_126469	104502417		NR_126469	ENSG00000227188	MGAT3-AS1	TapSAKI	MGAT3 antisense RNA 1	ncRNA
234613	chrX	19824521	19825400	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	8191	NM_001353894	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
45035	chr11	117031721	117032550	+	0	NA	intron (NM_001281748, intron 1 of 24)	L1MD|LINE|L1	66293	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
53279	chr12	64221451	64222720	+	0	NA	exon (NM_152440, exon 1 of 3)	exon (NM_152440, exon 1 of 3)	211	NM_152440	144577		NM_152440	ENSG00000174206	KICS2	C12orf66	KICSTOR subunit 2	protein-coding
167651	chr3	129626321	129627300	+	0	NA	Intergenic	Intergenic	-20134	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
99333	chr17	49846901	49847200	+	0	NA	non-coding (NR_164135, exon 3 of 3)	non-coding (NR_164135, exon 3 of 3)	967	NM_001077505	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
111587	chr19	4082721	4083130	+	0	NA	Intergenic	Intergenic	-16026	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
227178	chr9	87525351	87525450	+	0	NA	intron (NM_001288730, intron 2 of 25)	intron (NM_001288730, intron 2 of 25)	26865	NM_001288729	1612		NM_004938	ENSG00000196730	DAPK1	DAPK|ROCO3	death associated protein kinase 1	protein-coding
221550	chr8	124953721	124954080	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	11892	NR_027321	157381		NR_027321	ENSG00000249816	LINC00964	-	long intergenic non-protein coding RNA 964	ncRNA
101004	chr17	64658851	64659380	+	0	NA	intron (NM_022739, intron 1 of 18)	intron (NM_022739, intron 1 of 18)	3192	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
235088	chrX	40245071	40245750	+	0	NA	Intergenic	Intergenic	-17507	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
64525	chr14	24431621	24432800	+	0	NA	exon (NM_001290257, exon 3 of 8)	exon (NM_001290257, exon 3 of 8)	2256	NM_015299	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
16976	chr1	155963001	155963400	+	0	NA	intron (NM_004723, intron 7 of 21)	intron (NM_004723, intron 7 of 21)	-11864	NR_106796	102465442		NR_106796	ENSG00000277817	MIR6738	hsa-mir-6738	microRNA 6738	ncRNA
116642	chr19	18315801	18316980	+	0	NA	intron (NM_012321, intron 1 of 4)	AluSx|SINE|Alu	6686	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
238003	chrX	134806871	134808500	+	0	NA	exon (NM_001365744, exon 3 of 6)	exon (NM_001365744, exon 3 of 6)	448	NM_001170784	159091		NM_138819	ENSG00000156500	PABIR3	FAM122C	PABIR family member 3	protein-coding
104684	chr17	81510701	81511540	+	0	NA	intron (NM_001199954, intron 4 of 5)	intron (NM_001199954, intron 4 of 5)	1679	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
167901	chr3	136155001	136155980	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSq2|SINE|Alu	38978	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
120153	chr19	42230571	42230730	+	0	NA	3' UTR (NM_019884, exon 11 of 11)	3' UTR (NM_019884, exon 11 of 11)	10338	NM_001314033	116115		NM_133444	ENSG00000167625	ZNF526	DENNED	zinc finger protein 526	protein-coding
158597	chr3	4821651	4822530	+	0	NA	intron (NM_002222, intron 56 of 57)	MIRc|SINE|MIR	-70500	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
118517	chr19	35994851	35995880	+	0	NA	exon (NM_001042631, exon 1 of 1)	exon (NM_001042631, exon 1 of 1)	177	NM_001042631	644096		NM_001042631	ENSG00000205138	SDHAF1	LYRM8|MC2DN2	succinate dehydrogenase complex assembly factor 1	protein-coding
19958	chr1	184870351	184871000	+	0	NA	intron (NM_052966, intron 5 of 13)	intron (NM_052966, intron 5 of 13)	103833	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
112135	chr19	5608671	5609150	+	0	NA	intron (NM_014649, intron 9 of 20)	AluSx1|SINE|Alu	13866	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
101331	chr17	66715501	66715930	+	0	NA	intron (NM_002737, intron 8 of 16)	intron (NM_002737, intron 8 of 16)	-71357	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
201207	chr6	143529201	143529400	+	0	NA	Intergenic	Intergenic	-17580	NM_032020	2519		NM_032020	ENSG00000001036	FUCA2	dJ20N2.5	alpha-L-fucosidase 2	protein-coding
7024	chr1	31918971	31919130	+	0	NA	exon (NM_001195101, exon 2 of 5)	exon (NM_001195101, exon 2 of 5)	18768	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
131209	chr2	95053671	95054650	+	0	NA	TTS (NM_002371)	TTS (NM_002371)	28452	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
72084	chr15	28910421	28910680	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	-11087	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
141480	chr2	241082171	241082550	+	0	NA	exon (NM_001080437, exon 29 of 32)	exon (NM_001080437, exon 29 of 32)	19927	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
38156	chr11	35662101	35663530	+	0	NA	promoter-TSS (NM_017583)	promoter-TSS (NM_017583)	40	NM_017583	54765		NM_017583	ENSG00000166326	TRIM44	AN3|DIPB|HSA249128|MC7	tripartite motif containing 44	protein-coding
160602	chr3	31248371	31248530	+	0	NA	Intergenic	Intergenic	-86663	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
234714	chrX	21375871	21376430	+	0	NA	intron (NM_001168647, intron 1 of 20)	intron (NM_001168647, intron 1 of 20)	1732	NM_001330773	22866		NM_014927	ENSG00000149970	CNKSR2	CNK2|KSR2|MAGUIN|MRXSHG	connector enhancer of kinase suppressor of Ras 2	protein-coding
118491	chr19	35937551	35938330	+	0	NA	intron (NM_024509, intron 1 of 2)	intron (NM_024509, intron 1 of 2)	1566	NM_024509	79414		NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
158411	chr22	50530701	50531300	+	0	NA	promoter-TSS (NM_001113756)	promoter-TSS (NM_001113756)	-915	NM_001257988	1890		NM_001953	ENSG00000025708	TYMP	ECGF|ECGF1|MEDPS1|MNGIE|MTDPS1|PDECGF|TP|hPD-ECGF	thymidine phosphorylase	protein-coding
236416	chrX	71253941	71256330	+	0	NA	promoter-TSS (NM_005096)	promoter-TSS (NM_005096)	62	NM_001171162	9203		NM_005096	ENSG00000147130	ZMYM3	DXS6673E|MYM|XFIM|XLID112|ZNF198L2|ZNF261	zinc finger MYM-type containing 3	protein-coding
58692	chr12	132553051	132554100	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-28422	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
160952	chr3	36942951	36943500	+	0	NA	intron (NM_001329998, intron 1 of 23)	MER112|DNA|hAT-Charlie	1829	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
148410	chr20	63946071	63946380	+	0	NA	exon (NM_001353476, exon 3 of 15)	exon (NM_001353476, exon 3 of 15)	-3499	NR_030377	693232		NR_030377	ENSG00000207554	MIR647	MIRN647|hsa-mir-647	microRNA 647	ncRNA
103476	chr17	78349521	78349780	+	0	NA	Intergenic	Intergenic	10017	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
118760	chr19	38374121	38375680	+	0	NA	exon (NM_002812, exon 1 of 7)	exon (NM_002812, exon 1 of 7)	329	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
11343	chr1	89602921	89603630	+	0	NA	Intergenic	Intergenic	29619	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
104783	chr17	81718151	81718450	+	0	NA	intron (NM_012140, intron 9 of 10)	AluSq2|SINE|Alu	6016	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
50384	chr12	47237871	47238630	+	0	NA	Intergenic	Intergenic	-21807	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
185161	chr5	119336071	119336780	+	0	NA	intron (NM_001286814, intron 1 of 1)	intron (NM_001286814, intron 1 of 1)	3250	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
151481	chr21	46264721	46264980	+	0	NA	intron (NM_003906, intron 12 of 27)	intron (NM_003906, intron 12 of 27)	20761	NM_003906	8888		NM_003906	ENSG00000160294	MCM3AP	GANP|MAP80|PNRIID|SAC3	minichromosome maintenance complex component 3 associated protein	protein-coding
183990	chr5	90390351	90390650	+	0	NA	Intergenic	Intergenic	19256	NM_004365	1070		NM_004365	ENSG00000153140	CETN3	CDC31|CEN3	centrin 3	protein-coding
83921	chr16	29025201	29026280	+	0	NA	Intergenic	Intergenic	40688	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
124662	chr2	3199771	3199930	+	0	NA	intron (NM_003310, intron 5 of 8)	intron (NM_003310, intron 5 of 8)	-73824	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
209921	chr7	92447901	92448980	+	0	NA	intron (NR_052016, intron 1 of 5)	intron (NR_052016, intron 1 of 5)	958	NM_021167	57798		NM_021167	ENSG00000157259	GATAD1	CMD2B|ODAG|RG083M05.2	GATA zinc finger domain containing 1	protein-coding
134730	chr2	144580521	144581090	+	0	NA	Intergenic	Intergenic	-56361	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
208231	chr7	65378971	65379130	+	0	NA	intron (NM_001287534, intron 1 of 1)	MER21C|LTR|ERVL	5195	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
181699	chr5	50633851	50634150	+	0	NA	Intergenic	L1MC2|LINE|L1	-31931	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
222232	chr8	133094951	133095050	+	0	NA	intron (NM_001045556, intron 1 of 8)	intron (NM_001045556, intron 1 of 8)	7602	NM_001282964	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
197930	chr6	89793951	89794600	+	0	NA	intron (NM_014611, intron 3 of 101)	intron (NM_014611, intron 3 of 101)	25519	NM_014611	23195		NM_014611	ENSG00000112159	MDN1	Rea1	midasin AAA ATPase 1	protein-coding
133250	chr2	113278301	113278630	+	0	NA	5' UTR (NM_013992, exon 2 of 9)	5' UTR (NM_013992, exon 2 of 9)	456	NM_013953	7849		NM_003466	ENSG00000125618	PAX8	PAX-8	paired box 8	protein-coding
210408	chr7	100015121	100016750	+	0	NA	intron (NM_001287055, intron 1 of 3)	CpG	339	NR_144477	7586		NM_003439	ENSG00000106261	ZKSCAN1	KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
38398	chr11	44936421	44937500	+	0	NA	intron (NM_006034, intron 4 of 6)	intron (NM_006034, intron 4 of 6)	13200	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
171444	chr3	196287021	196288550	+	0	NA	promoter-TSS (NM_001312673)	promoter-TSS (NM_001312673)	-59	NM_005017	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
84488	chr16	30488071	30488230	+	0	NA	intron (NM_002209, intron 9 of 30)	AluJo|SINE|Alu	15408	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
56935	chr12	120458401	120459030	+	0	NA	intron (NM_176818, intron 3 of 3)	intron (NM_176818, intron 3 of 3)	11033	NM_003769	8683		NM_003769	ENSG00000111786	SRSF9	SFRS9|SRp30c	serine and arginine rich splicing factor 9	protein-coding
202360	chr6	157756601	157757780	+	0	NA	Intergenic	Intergenic	-66056	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
85763	chr16	56868471	56868950	+	0	NA	intron (NM_001126107, intron 3 of 25)	AluSg7|SINE|Alu	3503	NM_001126108	6559		NM_000339	ENSG00000070915	SLC12A3	NCC|NCCT|TSC	solute carrier family 12 member 3	protein-coding
99654	chr17	50704771	50705430	+	0	NA	intron (NM_052855, intron 1 of 4)	AluY|SINE|Alu	2814	NM_052855	91369		NM_052855	ENSG00000154945	ANKRD40	-	ankyrin repeat domain 40	protein-coding
199849	chr6	127766751	127767080	+	0	NA	intron (NM_001010923, intron 4 of 5).2	Tigger3b|DNA|TcMar-Tigger	88273	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
20329	chr1	197756271	197756430	+	0	NA	intron (NM_001300858, intron 2 of 15)	AluSz|SINE|Alu	19130	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
75909	chr15	70085551	70085850	+	0	NA	intron (NM_001282982, intron 2 of 17)	intron (NM_001282982, intron 2 of 17)	-6232	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
35176	chr11	780171	780730	+	0	NA	intron (NR_126342, intron 2 of 3)	intron (NR_126342, intron 2 of 3)	2872	NR_126342	171391		NM_138291	ENSG00000255284	GATD1-DT	NS3BP	GATD1 divergent transcript	ncRNA
49019	chr12	14260771	14261330	+	0	NA	Intergenic	Intergenic	-104582	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
39087	chr11	48005151	48006280	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	25156	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
71901	chr15	22665711	22666530	+	0	NA	intron (NR_003521, intron 1 of 10)	intron (NR_003521, intron 1 of 10)	1381	NR_003521	339005		NR_003521		WHAMMP3	WHAMML1|WHDC1L1	WHAMM pseudogene 3	pseudo
34149	chr10	128058171	128058680	+	0	NA	intron (NR_136150, intron 2 of 2)	intron (NR_136150, intron 2 of 2)	4000	NR_136150	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
189286	chr5	172108471	172108630	+	0	NA	intron (NM_005990, intron 4 of 18)	AluSz6|SINE|Alu	79674	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
17601	chr1	156891971	156892830	+	0	NA	Intergenic	Intergenic	-1318	NM_001353682	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
177475	chr4	113772501	113773280	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-10963	NM_172114	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
71372	chr14	105497571	105498330	+	0	NA	exon (NM_001134875, exon 7 of 8)	exon (NM_001134875, exon 7 of 8)	6701	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
21757	chr1	206905051	206906130	+	0	NA	intron (NM_001193338, intron 6 of 6)	intron (NM_001193338, intron 6 of 6)	8147	NM_006850	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
130422	chr2	85349021	85349480	+	0	NA	intron (NM_017750, intron 5 of 10)	intron (NM_017750, intron 5 of 10)	5278	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
207811	chr7	50306771	50307860	+	0	NA	intron (NM_006060, intron 1 of 7)	intron (NM_006060, intron 1 of 7)	-1385	NM_001291847	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
98568	chr17	47710171	47710680	+	0	NA	intron (NM_014726, intron 8 of 8)	intron (NM_014726, intron 8 of 8)	15161	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
113967	chr19	10803051	10803150	+	0	NA	intron (NM_001005362, intron 12 of 19)	L2c|LINE|L2	14396	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
90770	chr17	2062951	2063050	+	0	NA	3' UTR (NM_006497, exon 2 of 2)	3' UTR (NM_006497, exon 2 of 2)	6690	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
9343	chr1	46673801	46674200	+	0	NA	promoter-TSS (NR_038827)	promoter-TSS (NR_038827)	-36	NR_038828	100130197		NR_038827	ENSG00000228237	EFCAB14-AS1	KIAA0494-AS1	EFCAB14 antisense RNA 1	ncRNA
188797	chr5	157917821	157918300	+	0	NA	Intergenic	LTR8|LTR|ERV1	-58915	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
207536	chr7	44822201	44822700	+	0	NA	Intergenic	AluSz|SINE|Alu	25637	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
177562	chr4	119284871	119285380	+	0	NA	intron (NM_001371398, intron 16 of 16)	intron (NM_001371398, intron 16 of 16)	15520	NM_001001701	401152		NM_001001701	ENSG00000164096	C4orf3	ALN|HCVFTP1	chromosome 4 open reading frame 3	protein-coding
135542	chr2	162328221	162328680	+	0	NA	intron (NM_001330266, intron 2 of 8)	intron (NM_001330266, intron 2 of 8)	9468	NM_001330267	25801		NM_012198	ENSG00000115271	GCA	GCL	grancalcin	protein-coding
229258	chr9	117487521	117487780	+	0	NA	Intergenic	Intergenic	-72593	NM_001365069	23245		NM_014010	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding
80549	chr16	2789121	2789780	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-1535	NM_001385464	260429		NM_152891	ENSG00000103355	PRSS33	EOS	serine protease 33	protein-coding
111806	chr19	4460201	4460400	+	0	NA	Intergenic	Intergenic	-2506	NM_025241	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
56457	chr12	115375451	115375550	+	0	NA	Intergenic	Intergenic	-691325	NM_005996	6926		NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box transcription factor 3	protein-coding
42661	chr11	72553771	72554130	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-16706	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
108307	chr18	63399771	63400630	+	0	NA	intron (NM_004869, intron 6 of 10)	intron (NM_004869, intron 6 of 10)	22276	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
110139	chr19	1607501	1607950	+	0	NA	Intergenic	AluY|SINE|Alu	-2263	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
223509	chr8	144099021	144099280	+	0	NA	exon (NM_030974, exon 7 of 9)	exon (NM_030974, exon 7 of 9)	4074	NM_001916	1537		NM_001916	ENSG00000179091	CYC1	MC3DN6|UQCR4	cytochrome c1	protein-coding
238309	chrX	149499821	149500800	+	0	NA	intron (NM_001166550, intron 4 of 8)	intron (NM_001166550, intron 4 of 8)	4996	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
167378	chr3	128794851	128795780	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	-51493	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
145117	chr20	38801201	38801400	+	0	NA	Intergenic	L1MB8|LINE|L1	-4397	NM_001172735	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
98739	chr17	48037011	48038600	+	0	NA	promoter-TSS (NM_016429)	promoter-TSS (NM_016429)	-8	NM_016429	51226		NM_016429	ENSG00000005243	COPZ2	zeta2-COP	COPI coat complex subunit zeta 2	protein-coding
175726	chr4	77595101	77595700	+	0	NA	intron (NM_006419, intron 1 of 4)	intron (NM_006419, intron 1 of 4)	-10420	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
126021	chr2	25337101	25337700	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	4525	NM_022552	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
216118	chr8	11288621	11289380	+	0	NA	intron (NM_015458, intron 1 of 9)	AluSx|SINE|Alu	4184	NM_015458	66036		NM_015458	ENSG00000104643	MTMR9	C8orf9|LIP-STYX|MTMR8	myotubularin related protein 9	protein-coding
231765	chr9	132236151	132237080	+	0	NA	intron (NM_032536, intron 5 of 7)	intron (NM_032536, intron 5 of 7)	74557	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
202736	chr6	158994601	158994800	+	0	NA	intron (NR_144434, intron 1 of 8)	intron (NR_144434, intron 1 of 8)	5487	NR_144434	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
5547	chr1	25863071	25863230	+	0	NA	exon (NM_178422, exon 3 of 3)	exon (NM_178422, exon 3 of 3)	-3692	NM_001287490	79000		NM_024037	ENSG00000127423	AUNIP	AIBP|C1orf135	aurora kinase A and ninein interacting protein	protein-coding
186789	chr5	139362771	139362930	+	0	NA	intron (NM_001033112, intron 1 of 3)	intron (NM_001033112, intron 1 of 3)	20416	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
90250	chr17	794551	795250	+	0	NA	Intergenic	Intergenic	12547	NM_018146	55178		NM_018146	ENSG00000171861	MRM3	RMTL1|RNMTL1	mitochondrial rRNA methyltransferase 3	protein-coding
142218	chr20	3070621	3070880	+	0	NA	promoter-TSS (NM_000915)	promoter-TSS (NM_000915)	-870	NM_000915	5020		NM_000915	ENSG00000101405	OXT	OT|OT-NPI|OXT-NPI	oxytocin/neurophysin I prepropeptide	protein-coding
103449	chr17	78277621	78277880	+	0	NA	intron (NR_073178, intron 1 of 6)	intron (NR_073178, intron 1 of 6)	742	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
233447	chr9	137626471	137627300	+	0	NA	intron (NM_001354612, intron 1 of 8)	AluSq|SINE|Alu	7880	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
40482	chr11	64243321	64244300	+	0	NA	TTS (NM_138689)	TTS (NM_138689)	1694	NM_057092	2286		NM_004470	ENSG00000173486	FKBP2	FKBP-13|FKBP13|PPIase	FKBP prolyl isomerase 2	protein-coding
170832	chr3	190176271	190176730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-54063	NM_001134418	55214		NM_018192	ENSG00000090530	P3H2	LEPREL1|MCVD|MLAT4	prolyl 3-hydroxylase 2	protein-coding
134366	chr2	136216071	136216430	+	0	NA	Intergenic	Intergenic	-98101	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
67113	chr14	68408551	68409030	+	0	NA	intron (NM_133509, intron 8 of 10)	MER102c|DNA|hAT-Charlie	219997	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
207317	chr7	44035021	44035630	+	0	NA	intron (NR_024116, intron 5 of 8)	AluSc|SINE|Alu	-3724	NR_072982	255031		NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
137319	chr2	196066921	196067400	+	0	NA	intron (NM_018897, intron 1 of 64)	intron (NM_018897, intron 1 of 64)	1677	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
114131	chr19	11208151	11208650	+	0	NA	intron (NR_134909, intron 2 of 2)	AluSg|SINE|Alu	4772	NR_134909	105372273		NR_134909	ENSG00000267082	DOCK6-AS1	-	DOCK6 antisense RNA 1	ncRNA
21277	chr1	204407371	204407650	+	0	NA	intron (NM_032833, intron 1 of 1)	intron (NM_032833, intron 1 of 1)	4307	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
108801	chr18	78493251	78493750	+	0	NA	Intergenic	Intergenic	-486775	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
122802	chr19	50365501	50366450	+	0	NA	promoter-TSS (NM_004851)	promoter-TSS (NM_004851)	-336	NM_004851	9476		NM_004851	ENSG00000131400	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
76264	chr15	74071151	74071900	+	0	NA	intron (NM_001038640, intron 15 of 17)	intron (NM_001038640, intron 15 of 17)	11025	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
200866	chr6	138693081	138693780	+	0	NA	intron (NR_033896, intron 1 of 3)	CpG	1762	NR_033896	441172		NR_033896		NHSL1-AS1	-	NHSL1 antisense RNA 1	ncRNA
163252	chr3	50284201	50284600	+	0	NA	intron (NM_153215, intron 1 of 3)	L1M5|LINE|L1	5313	NM_001304385	132228		NM_153215	ENSG00000179564	LSMEM2	C3orf45	leucine rich single-pass membrane protein 2	protein-coding
189663	chr5	176364801	176366000	+	0	NA	promoter-TSS (NM_001317948)	promoter-TSS (NM_001317948)	-68	NM_001317948	285598		NM_173664	ENSG00000175414	ARL10	ARL10A	ADP ribosylation factor like GTPase 10	protein-coding
159105	chr3	12576971	12577130	+	0	NA	intron (NM_014160, intron 6 of 7)	AluJb|SINE|Alu	-16051	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
217886	chr8	37873701	37873900	+	0	NA	intron (NM_001002814, intron 3 of 5)	intron (NM_001002814, intron 3 of 5)	-23939	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
180290	chr5	3276171	3276330	+	0	NA	Intergenic	Intergenic	98415	NR_104617	102467074		NR_104617	ENSG00000249808	LINC01377	-	long intergenic non-protein coding RNA 1377	ncRNA
51638	chr12	53004671	53004980	+	0	NA	Intergenic	Intergenic	-1631	NM_001300821	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
164732	chr3	69010001	69010200	+	0	NA	intron (NM_173654, intron 3 of 14)	L2a|LINE|L2	3584	NR_103826	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
172762	chr4	2873001	2873400	+	0	NA	intron (NM_001286645, intron 2 of 17)	AluSx|SINE|Alu	29050	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
47903	chr12	6749271	6749430	+	0	NA	intron (NM_001382226, intron 7 of 8)	intron (NM_001382226, intron 7 of 8)	3566	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
94618	chr17	29828721	29829180	+	0	NA	intron (NM_033389, intron 1 of 14)	intron (NM_033389, intron 1 of 14)	-67518	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
64899	chr14	35396171	35396350	+	0	NA	Intergenic	LTR7Y|LTR|ERV1	8489	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
82007	chr16	11913451	11914800	+	0	NA	intron (NM_001130007, intron 1 of 14)	intron (NM_001130007, intron 1 of 14)	1831	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
42879	chr11	73334421	73334680	+	0	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	-25189	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
93868	chr17	21032771	21032930	+	0	NA	intron (NM_015276, intron 1 of 12)	AluJb|SINE|Alu	10161	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
211236	chr7	102646021	102646480	+	0	NA	intron (NM_032959, intron 4 of 8)	AluJr|SINE|Alu	-3459	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
113355	chr19	8670901	8671680	+	0	NA	intron (NM_001378601, intron 1 of 2)	intron (NM_001378601, intron 1 of 2)	15713	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
123035	chr19	51158421	51158880	+	0	NA	intron (NR_110732, intron 2 of 4)	intron (NR_110732, intron 2 of 4)	-8678	NR_047530	284367		NR_002804	ENSG00000291114	SIGLEC17P	HSPC078|SIGLECP2|SIGLECP3	sialic acid binding Ig like lectin 17, pseudogene	pseudo
108665	chr18	76820851	76820950	+	0	NA	intron (NR_040024, intron 1 of 2)	L1MEg|LINE|L1	1395	NR_040024	100131655		NR_040024	ENSG00000264278	ZNF236-DT	-	ZNF236 divergent transcript	ncRNA
68341	chr14	77610021	77610880	+	0	NA	intron (NM_004863, intron 1 of 11)	intron (NM_004863, intron 1 of 11)	6187	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
135797	chr2	169829521	169829850	+	0	NA	intron (NM_172070, intron 1 of 38)	AluSp|SINE|Alu	2231	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
101468	chr17	67468001	67468450	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-3264	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
205799	chr7	24200001	24200480	+	0	NA	Intergenic	Intergenic	-83950	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
34347	chr10	132197771	132198130	+	0	NA	intron (NM_006426, intron 6 of 13)	intron (NM_006426, intron 6 of 13)	11002	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
174980	chr4	49643001	49643600	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	656658	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
165540	chr3	100737501	100737700	+	0	NA	intron (NM_001007565, intron 6 of 7)	intron (NM_001007565, intron 6 of 7)	28058	NM_001195478	10342		NM_006070	ENSG00000114354	TFG	HMSNP|SPG57|TF6|TRKT3	trafficking from ER to golgi regulator	protein-coding
20127	chr1	192543171	192543730	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-32323	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
12963	chr1	110885421	110886000	+	0	NA	intron (NM_001040033, intron 2 of 8)	AluSx|SINE|Alu	12562	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
62589	chr13	99998451	99998550	+	0	NA	promoter-TSS (NR_047483)	promoter-TSS (NR_047483)	-591	NR_047483	100861542		NR_047483	ENSG00000260738	LINC00554	lncZic2	long intergenic non-protein coding RNA 554	ncRNA
215975	chr8	8797101	8798100	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	95663	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
188542	chr5	156660371	156660550	+	0	NA	intron (NM_000337, intron 7 of 8)	HERVK-int|LTR|ERVK	-189835	NM_206858	153743		NM_206858	ENSG00000231989	PPP1R2B	PPP1R2P3	PPP1R2 family member B	protein-coding
99215	chr17	49571421	49571680	+	0	NA	intron (NR_103773, intron 1 of 2)	L2a|LINE|L2	2514	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
93161	chr17	17779401	17779980	+	0	NA	promoter-TSS (NR_024007)	promoter-TSS (NR_024007)	-161	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
2757	chr1	10686971	10687130	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	109596	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
160420	chr3	28287971	28288350	+	0	NA	intron (NM_001331189, intron 3 of 4)	intron (NM_001331189, intron 3 of 4)	46541	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
186617	chr5	138533471	138533980	+	0	NA	intron (NM_001291975, intron 2 of 11)	intron (NM_001291975, intron 2 of 11)	7986	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
15684	chr1	150970551	150970850	+	0	NA	intron (NM_181746, intron 1 of 10)	AluJb|SINE|Alu	4135	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
189764	chr5	176643801	176644400	+	0	NA	intron (NM_001375362, intron 5 of 8)	MIRc|SINE|MIR	-3384	NM_130465	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
171050	chr3	195256851	195257630	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	-9320	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
156948	chr22	42341301	42341500	+	0	NA	Intergenic	Intergenic	27808	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
173303	chr4	7169121	7169380	+	0	NA	Intergenic	L2c|LINE|L2	-23288	NM_020777	57537		NM_020777	ENSG00000184985	SORCS2	-	sortilin related VPS10 domain containing receptor 2	protein-coding
183679	chr5	80654221	80655530	+	0	NA	exon (NM_002439, exon 1 of 24)	exon (NM_002439, exon 1 of 24)	108	NM_000791	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
144022	chr20	33456821	33457650	+	0	NA	Intergenic	Intergenic	-13472	NM_003098	6640		NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	syntrophin alpha 1	protein-coding
110267	chr19	1807301	1808650	+	0	NA	intron (NR_047593, intron 5 of 28)	intron (NR_047593, intron 5 of 28)	4301	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
158742	chr3	9136201	9136400	+	0	NA	intron (NM_014850, intron 1 of 21)	CpG	-56193	NR_121663	101927416		NR_121663	ENSG00000228723	SRGAP3-AS2	-	SRGAP3 antisense RNA 2	ncRNA
107287	chr18	44716671	44717230	+	0	NA	intron (NM_001130110, intron 2 of 3)	MIRb|SINE|MIR	16075	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
198654	chr6	107817401	107818130	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	6548	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
165273	chr3	75579671	75580400	+	0	NA	Intergenic	CpG	-50728	NR_031714	100302212		NR_031714	ENSG00000283894	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
237289	chrX	113299751	113299950	+	0	NA	intron (NR_110399, intron 3 of 3)	(CCTCT)n|Simple_repeat|Simple_repeat	257123	NR_110399	101928437		NR_110399		LOC101928437	-	uncharacterized LOC101928437	ncRNA
181970	chr5	55113201	55113700	+	0	NA	3' UTR (NM_001145734, exon 11 of 11)	3' UTR (NM_001145734, exon 11 of 11)	10804	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
144944	chr20	37050251	37050550	+	0	NA	intron (NM_183404, intron 11 of 20)	AluY|SINE|Alu	45597	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
146805	chr20	50982301	50982530	+	0	NA	Intergenic	Intergenic	23597	NM_014484	27304		NM_014484	ENSG00000124217	MOCS3	UBA4	molybdenum cofactor synthesis 3	protein-coding
87172	chr16	69333351	69333450	+	0	NA	intron (NM_001374871, intron 3 of 3)	AluJr|SINE|Alu	-2812	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
202113	chr6	154767071	154767980	+	0	NA	intron (NM_001286189, intron 3 of 21)	Tigger2|DNA|TcMar-Tigger	34109	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
10014	chr1	55212351	55213090	+	0	NA	intron (NM_015306, intron 1 of 67)	intron (NM_015306, intron 1 of 67)	2644	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
159564	chr3	14886301	14886500	+	0	NA	intron (NM_152536, intron 4 of 19)	MLT1J|LTR|ERVL-MaLR	61105	NR_046252	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
81580	chr16	9748651	9748750	+	0	NA	Intergenic	Intergenic	-293195	NR_126349	104266959		NR_126349	ENSG00000261075	LINC01195	-	long intergenic non-protein coding RNA 1195	ncRNA
101496	chr17	67650401	67651350	+	0	NA	intron (NM_181671, intron 6 of 9)	intron (NM_181671, intron 6 of 9)	-66958	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
24999	chr10	3185751	3186000	+	0	NA	Intergenic	LTR1E|LTR|ERV1	-13034	NM_001242307	10531		NM_014889	ENSG00000107959	PITRM1	MP1|PreP|SCAR30	pitrilysin metallopeptidase 1	protein-coding
198904	chr6	109693301	109693500	+	0	NA	intron (NM_014845, intron 1 of 22)	intron (NM_014845, intron 1 of 22)	2104	NM_014845	9896		NM_014845	ENSG00000112367	FIG4	ALS11|BOP|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1	FIG4 phosphoinositide 5-phosphatase	protein-coding
173009	chr4	4385851	4386700	+	0	NA	promoter-TSS (NM_001040101)	promoter-TSS (NM_001040101)	-257	NM_001287763	27065		NM_014392	ENSG00000168824	NSG1	D4S234|D4S234E|NEEP21|P21	neuronal vesicle trafficking associated 1	protein-coding
88263	chr16	82781951	82782050	+	0	NA	intron (NR_110938, intron 1 of 2)	intron (NR_110938, intron 1 of 2)	8681	NR_110938	101928446		NR_110938	ENSG00000260862	LOC101928446	-	uncharacterized LOC101928446	ncRNA
19241	chr1	172653301	172653530	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-5593	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
132184	chr2	101822671	101823610	+	0	NA	intron (NM_001384572, intron 2 of 29)	intron (NM_001384572, intron 2 of 29)	124875	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
37499	chr11	18407071	18407750	+	0	NA	non-coding (NR_028500, exon 7 of 7)	non-coding (NR_028500, exon 7 of 7)	-4896	NM_002301	3948		NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
203424	chr7	325251	325550	+	0	NA	Intergenic	MIR|SINE|MIR	34171	NR_164665	100288524		NM_001195127	ENSG00000248767	FOXL3-OT1	FOXL3|WI2-2373I1.2	FOXL3 overlapping transcript 1	ncRNA
227062	chr9	84173121	84173400	+	0	NA	Intergenic	Intergenic	109817	NR_110995	101927575		NR_110995	ENSG00000227463	LOC101927575	-	uncharacterized LOC101927575	ncRNA
4798	chr1	23578351	23578730	+	0	NA	Intergenic	Intergenic	-19039	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
54211	chr12	79915671	79915830	+	0	NA	intron (NM_001143885, intron 2 of 25)	L3|LINE|CR1	-1839	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
59944	chr13	31177601	31178380	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-15602	NM_001286504	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
156660	chr22	41641771	41642130	+	0	NA	intron (NM_001288976, intron 6 of 12)	AluSq2|SINE|Alu	20655	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
31332	chr10	92884901	92885400	+	0	NA	intron (NM_001319200, intron 1 of 17)	intron (NM_001319200, intron 1 of 17)	36630	NM_001319195	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
137013	chr2	190663971	190664350	+	0	NA	intron (NM_005966, intron 4 of 9)	L1MEd|LINE|L1	5002	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
53759	chr12	68667701	68668650	+	0	NA	3' UTR (NM_015646, exon 8 of 8)	3' UTR (NM_015646, exon 8 of 8)	18684	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
89696	chr16	89395151	89395850	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-35418	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
91231	chr17	3936271	3936430	+	0	NA	exon (NM_005173, exon 16 of 21)	exon (NM_005173, exon 16 of 21)	-19885	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
95239	chr17	35366821	35367080	+	0	NA	5' UTR (NM_001104590, exon 3 of 7)	5' UTR (NM_001104590, exon 3 of 7)	6671	NM_001376010	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
41767	chr11	66726801	66727790	+	0	NA	intron (NM_006946, intron 1 of 37)	intron (NM_006946, intron 1 of 37)	1921	NM_006946	6712		NM_006946	ENSG00000173898	SPTBN2	GTRAP41|SCA5|SCAR14	spectrin beta, non-erythrocytic 2	protein-coding
75136	chr15	64590101	64590500	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	112981	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
14914	chr1	147245621	147245880	+	0	NA	intron (NM_001348452, intron 1 of 22)	AluJr|SINE|Alu	2608	NM_001348452	9557		NM_004284	ENSG00000131778	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1 like	protein-coding
217507	chr8	29127071	29127380	+	0	NA	exon (NM_015254, exon 25 of 40)	exon (NM_015254, exon 25 of 40)	135845	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
38028	chr11	35142371	35143580	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	3804	NM_001001391	960		NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECM-III|ECMR-III|H-CAM|HCELL|HUTCH-1|HUTCH-I|Hermes-1|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (IN blood group)	protein-coding
198753	chr6	108576571	108577330	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	16033	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
199876	chr6	127813121	127814080	+	0	NA	exon (NM_001164685, exon 4 of 7)	exon (NM_001164685, exon 4 of 7)	41588	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
130950	chr2	87512871	87513930	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	43450	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
134398	chr2	137952621	137952950	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-11688	NM_001024075	3176		NM_006895	ENSG00000150540	HNMT	HMT|HNMT-S1|HNMT-S2|MRT51	histamine N-methyltransferase	protein-coding
210064	chr7	95916521	95916830	+	0	NA	intron (NM_004411, intron 6 of 16)	intron (NM_004411, intron 6 of 16)	144169	NM_004411	1780		NM_004411	ENSG00000158560	DYNC1I1	DNCI1|DNCIC1	dynein cytoplasmic 1 intermediate chain 1	protein-coding
156589	chr22	41531601	41532430	+	0	NA	intron (NM_138338, intron 5 of 6)	intron (NM_138338, intron 5 of 6)	12455	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
200898	chr6	139032701	139033900	+	0	NA	intron (NM_021243, intron 1 of 2)	L2c|LINE|L2	4555	NM_021243	58527		NM_021243	ENSG00000146386	ABRACL	C6orf115|Costars|HSPC280|PRO2013	ABRA C-terminal like	protein-coding
127969	chr2	46701221	46701600	+	0	NA	intron (NM_144949, intron 1 of 1)	MIR3|SINE|MIR	2115	NM_144949	9655		NM_014011	ENSG00000171150	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
20099	chr1	186985901	186986180	+	0	NA	intron (NM_024420, intron 17 of 17)	intron (NM_024420, intron 17 of 17)	-106802	NR_126347	104169671		NR_126347	ENSG00000230426	LINC01036	-	long intergenic non-protein coding RNA 1036	ncRNA
22651	chr1	223748421	223749480	+	0	NA	intron (NM_001748, intron 5 of 20)	CpG	36411	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
207084	chr7	39976121	39976400	+	0	NA	intron (NM_003718, intron 1 of 13)	AluSx1|SINE|Alu	25900	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
95988	chr17	39193251	39193900	+	0	NA	intron (NM_199247, intron 2 of 12)	intron (NM_199247, intron 2 of 12)	4094	NM_199248	782		NM_000723	ENSG00000067191	CACNB1	CAB1|CACNLB1|CCHLB1	calcium voltage-gated channel auxiliary subunit beta 1	protein-coding
5845	chr1	26717971	26718330	+	0	NA	intron (NM_139135, intron 1 of 19)	AluSp|SINE|Alu	22135	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
124916	chr2	8515051	8516600	+	0	NA	Intergenic	(CCT)n|Simple_repeat|Simple_repeat	67967	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
128056	chr2	47786901	47787100	+	0	NA	intron (NM_001281494, intron 1 of 9)	L1M5|LINE|L1	3045	NM_001281494	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
231839	chr9	132668221	132668680	+	0	NA	intron (NM_001322340, intron 1 of 17)	MER4E1|LTR|ERV1	1533	NM_001322341	64794		NM_022779	ENSG00000125485	DDX31	PPP1R25	DEAD-box helicase 31	protein-coding
10837	chr1	77952871	77953030	+	0	NA	intron (NR_146539, intron 18 of 22)	AluSq2|SINE|Alu	26122	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
193115	chr6	28949851	28950350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	6316	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
101837	chr17	73822471	73822830	+	0	NA	intron (NR_027146, intron 2 of 3)	intron (NR_027146, intron 2 of 3)	5887	NR_027146	283982		NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
118336	chr19	35609701	35610500	+	0	NA	Intergenic	Intergenic	-2635	NM_015302	23354		NM_015302	ENSG00000249115	HAUS5	KIAA0841|dgt5	HAUS augmin like complex subunit 5	protein-coding
230106	chr9	127589851	127590380	+	0	NA	Intergenic	Intergenic	-11084	NM_001035534	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
69036	chr14	91835771	91837230	+	0	NA	promoter-TSS (NM_152332).2	promoter-TSS (NM_152332).2	-45	NM_001289134	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
146661	chr20	50468001	50468580	+	0	NA	Intergenic	Intergenic	-42031	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138161	chr2	202578071	202578250	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-56809	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
130600	chr2	85885721	85886030	+	0	NA	intron (NM_001354229, intron 1 of 7)	intron (NM_001354229, intron 1 of 7)	1674	NM_001354238	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
17107	chr1	156152151	156152250	+	0	NA	intron (NM_001370568, intron 1 of 13)	MIR|SINE|MIR	-1378	NM_001193302	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
72043	chr15	28723221	28723880	+	0	NA	Intergenic	L1MB2|LINE|L1	-11129	NM_001282468	653720		NM_001282468	ENSG00000188626	GOLGA8M	-	golgin A8 family member M	protein-coding
158546	chr3	4290321	4290730	+	0	NA	Intergenic	Intergenic	-12779	NM_001276325	6419		NM_006515	ENSG00000170364	SETMAR	METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
62247	chr13	98541771	98542130	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-19825	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
156355	chr22	40948271	40949150	+	0	NA	Intergenic	AluJb|SINE|Alu	-2668	NM_014248	9978		NM_014248	ENSG00000100387	RBX1	BA554C12.1|RNF75|ROC1	ring-box 1	protein-coding
68649	chr14	89955501	89957380	+	0	NA	intron (NM_001330205, intron 1 of 14)	MIR|SINE|MIR	513	NM_001008744	55775		NM_018319	ENSG00000042088	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
48758	chr12	11199601	11199880	+	0	NA	Intergenic	Intergenic	-12803	NM_181429	353164		NM_181429	ENSG00000186136	TAS2R42	T2R24|T2R42|T2R55|TAS2R55	taste 2 receptor member 42	protein-coding
13129	chr1	111647821	111649130	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-16319	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
83174	chr16	23474121	23474380	+	0	NA	intron (NM_015044, intron 14 of 16)	intron (NM_015044, intron 14 of 16)	-21061	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
135779	chr2	169732401	169733000	+	0	NA	intron (NR_144936, intron 3 of 4)	AluJo|SINE|Alu	-1132	NM_144711	151230		NM_144711	ENSG00000213160	KLHL23	DITHP	kelch like family member 23	protein-coding
205777	chr7	23539321	23540450	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-7844	NM_001282757	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
37563	chr11	18739721	18739980	+	0	NA	intron (NM_032781, intron 8 of 14)	LTR79|LTR|ERVL	-13662	NR_160413	283284		NM_173588	ENSG00000179057	IGSF22	IGFN2	immunoglobulin superfamily member 22	protein-coding
211062	chr7	102468021	102468380	+	0	NA	intron (NM_001317721, intron 6 of 14)	intron (NM_001317721, intron 6 of 14)	2458	NR_049813	100847073		NR_049813	ENSG00000284176	MIR5090	mir-5090	microRNA 5090	ncRNA
122619	chr19	49807121	49807850	+	0	NA	TTS (NM_130787)	TTS (NM_130787)	5807	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
201250	chr6	144066871	144067730	+	0	NA	Intergenic	Intergenic	-2701	NM_001289043	5325		NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
56041	chr12	110448451	110448830	+	0	NA	intron (NM_001287222, intron 1 of 6)	AluJo|SINE|Alu	1697	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
225022	chr9	33139571	33140150	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-27088	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
25268	chr10	6098571	6098730	+	0	NA	intron (NM_001145547, intron 2 of 11)	AluY|SINE|Alu	9304	NM_001145547	84991		NM_032905	ENSG00000134453	RBM17	SPF45	RNA binding motif protein 17	protein-coding
236541	chrX	72141201	72141780	+	0	NA	intron (NM_001013627, intron 6 of 7)	L1MB2|LINE|L1	-2694	NM_207422								
113948	chr19	10757371	10758500	+	0	NA	intron (NM_001005362, intron 1 of 19)	AluSq|SINE|Alu	-22319	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
50343	chr12	47110721	47110980	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	-30891	NM_001370299	347902		NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
183697	chr5	80851541	80851650	+	0	NA	intron (NM_002439, intron 20 of 23)	L1M5|LINE|L1	-108768	NM_006909	5924		NM_006909	ENSG00000113319	RASGRF2	GRF2|RAS-GRF2	Ras protein specific guanine nucleotide releasing factor 2	protein-coding
11384	chr1	89661501	89662000	+	0	NA	intron (NM_032270, intron 1 of 2)	L2a|LINE|L2	28630	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
77240	chr15	81297851	81298230	+	0	NA	intron (NR_148035, intron 13 of 18)	intron (NR_148035, intron 13 of 18)	1070	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
63939	chr14	22065721	22066380	+	0	NA	Intergenic	Intergenic	366703	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
213198	chr7	132573671	132573830	+	0	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	2720	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
184245	chr5	96666321	96666580	+	0	NA	intron (NM_001375317, intron 1 of 30)	intron (NM_001375317, intron 1 of 30)	3425	NM_001330629	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
221507	chr8	124594071	124594880	+	0	NA	intron (NM_001363300, intron 3 of 12)	AluSx|SINE|Alu	55352	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
78725	chr15	98653801	98654000	+	0	NA	intron (NM_000875, intron 1 of 20)	intron (NM_000875, intron 1 of 20)	-2679	NR_126453	104472848		NR_126453		IRAIN	IGF1R-AS|IGF1RAS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
66622	chr14	63730371	63730950	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2595	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
122787	chr19	50327471	50327630	+	0	NA	intron (NM_001372305, intron 1 of 4)	intron (NM_001372305, intron 1 of 4)	1521	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
148829	chr21	8388901	8389600	+	0	NA	TTS (NR_106782).3	TTS (NR_106782).3	215	NR_146151	109910379		NR_146151		RNA45SN3	-	RNA, 45S pre-ribosomal N3	rRNA
157241	chr22	43343051	43343850	+	0	NA	promoter-TSS (NM_173050)	promoter-TSS (NM_173050)	-78	NM_173050	80274		NM_152514	ENSG00000159307	SCUBE1	-	signal peptide, CUB domain and EGF like domain containing 1	protein-coding
71862	chr15	22272701	22272900	+	0	NA	intron (NR_033735, intron 1 of 2)	intron (NR_033735, intron 1 of 2)	14186	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
204901	chr7	6102701	6103250	+	0	NA	Intergenic	Intergenic	-1974	NM_032172	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
190203	chr5	178217171	178217630	+	0	NA	intron (NM_153373, intron 8 of 12)	AluSz|SINE|Alu	12867	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
42167	chr11	67803271	67803630	+	0	NA	intron (NR_024249, intron 1 of 3)	intron (NR_024249, intron 1 of 3)	1886	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
147240	chr20	57413621	57413950	+	0	NA	Intergenic	MIRc|SINE|MIR	-20729	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
212750	chr7	129921871	129922230	+	0	NA	intron (NM_001202498, intron 1 of 6)	AluSx|SINE|Alu	30910	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
63288	chr13	113973051	113973150	+	0	NA	intron (NM_001365455, intron 1 of 6)	MER4A|LTR|ERV1	976	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
172598	chr4	2485971	2486130	+	0	NA	intron (NM_001185009, intron 2 of 8)	MIR|SINE|MIR	16597	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
111969	chr19	4851691	4852450	+	0	NA	exon (NM_001164189, exon 5 of 8)	exon (NM_001164189, exon 5 of 8)	15597	NM_001164194	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
55338	chr12	103960001	103960200	+	0	NA	Intergenic	(ATTTATT)n|Simple_repeat|Simple_repeat	-2885	NM_001135570	728568		NM_001135570	ENSG00000204954	UQCC6	BR|BRAWNIN|C12orf73	ubiquinol-cytochrome c reductase complex assembly factor 6	protein-coding
89859	chr16	89615401	89616300	+	0	NA	intron (NM_001128141, intron 1 of 10)	intron (NM_001128141, intron 1 of 10)	2542	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
204651	chr7	5425721	5425980	+	0	NA	TTS (NM_001354886)	TTS (NM_001354886)	-2304	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
49340	chr12	22083121	22083780	+	0	NA	Intergenic	Intergenic	37232	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
125929	chr2	25131471	25132800	+	0	NA	intron (NM_014971, intron 10 of 22)	intron (NM_014971, intron 10 of 22)	36445	NM_000939	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
97393	chr17	43365421	43365880	+	0	NA	Intergenic	MER11C|LTR|ERVK	23248	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
35632	chr11	1833701	1834100	+	0	NA	promoter-TSS (NM_138567)	promoter-TSS (NM_138567)	-527	NM_138567	90019		NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
170711	chr3	187978351	187978980	+	0	NA	Intergenic	MIRc|SINE|MIR	-2258	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
70204	chr14	100554071	100554800	+	0	NA	intron (NM_001385102, intron 1 of 6)	intron (NM_001385102, intron 1 of 6)	-6308	NM_001385104	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
202532	chr6	158626621	158627430	+	0	NA	intron (NR_164859, intron 13 of 16)	(CTCACC)n|Simple_repeat|Simple_repeat	17318	NR_106981	102465694		NR_106981	ENSG00000278571	MIR7161	hsa-mir-7161	microRNA 7161	ncRNA
233331	chr9	137437121	137437580	+	0	NA	intron (NM_198585, intron 3 of 8)	intron (NM_198585, intron 3 of 8)	4007	NM_198585	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
228531	chr9	100597071	100597630	+	0	NA	Intergenic	LTR16|LTR|ERVL	19271	NM_001018116	347273		NM_001018116	ENSG00000170681	CAVIN4	MURC|cavin-4	caveolae associated protein 4	protein-coding
113660	chr19	10382171	10383230	+	0	NA	Intergenic	Intergenic	-2128	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
213166	chr7	131945551	131945650	+	0	NA	intron (NR_110836, intron 5 of 5)	CpG	35380	NR_110836	101928782		NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
228816	chr9	111984521	111985230	+	0	NA	Intergenic	AluSx|SINE|Alu	52775	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
204378	chr7	2980051	2980150	+	0	NA	intron (NM_032415, intron 1 of 24)	intron (NM_032415, intron 1 of 24)	63767	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
7849	chr1	36359621	36360130	+	0	NA	intron (NM_001282546, intron 2 of 10)	L2a|LINE|L2	26049	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
233004	chr9	137008021	137008350	+	0	NA	intron (NM_212533, intron 48 of 48)	intron (NM_212533, intron 48 of 48)	-11617	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
78917	chr15	101200721	101200980	+	0	NA	intron (NM_014918, intron 2 of 2)	intron (NM_014918, intron 2 of 2)	51198	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
108350	chr18	67360121	67360400	+	0	NA	Intergenic	Intergenic	-156286	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
9777	chr1	53498571	53499200	+	0	NA	Intergenic	Intergenic	39486	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
79479	chr16	764921	765650	+	0	NA	exon (NM_013404, exon 8 of 17)	exon (NM_013404, exon 8 of 17)	4212	NM_013404	10232		NM_005823	ENSG00000102854	MSLN	MPF|SMRP	mesothelin	protein-coding
164811	chr3	70954921	70955880	+	0	NA	non-coding (NR_146142, exon 20 of 20)	non-coding (NR_146142, exon 20 of 20)	109524	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
23839	chr1	234609001	234609600	+	0	NA	exon (NM_001077397, exon 1 of 2)	exon (NM_001077397, exon 1 of 2)	225	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
22359	chr1	214735651	214735750	+	0	NA	Intergenic	Intergenic	132505	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
113589	chr19	10276401	10276600	+	0	NA	intron (NM_000201, intron 2 of 6)	AluY|SINE|Alu	5380	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
13097	chr1	111606421	111606980	+	0	NA	intron (NR_034126, intron 1 of 4)	intron (NR_034126, intron 1 of 4)	1618	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
196195	chr6	42740771	42740930	+	0	NA	Intergenic	Intergenic	5253	NM_003192	6903		NM_003192	ENSG00000124659	TBCC	CFC	tubulin folding cofactor C	protein-coding
8589	chr1	41394771	41395130	+	0	NA	Intergenic	Intergenic	-19281	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
182823	chr5	69186551	69187430	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2593	NM_022909	64946		NM_022909	ENSG00000153044	CENPH	-	centromere protein H	protein-coding
125194	chr2	10150501	10150880	+	0	NA	intron (NR_164157, intron 11 of 12)	L1ME1|LINE|L1	27951	NM_001034	6241		NM_001034	ENSG00000171848	RRM2	C2orf48|R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
130878	chr2	87413451	87413780	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-41812	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
164536	chr3	63946901	63947380	+	0	NA	intron (NM_001177387, intron 3 of 12)	MIRb|SINE|MIR	-20654	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
147573	chr20	61029041	61029150	+	0	NA	Intergenic	Intergenic	-49969	NR_109919	100506470		NR_109919	ENSG00000229606	LINC01718	-	long intergenic non-protein coding RNA 1718	ncRNA
177284	chr4	109560901	109562030	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	1219	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
172566	chr4	2423021	2423480	+	0	NA	intron (NM_001193282, intron 1 of 15)	intron (NM_001193282, intron 1 of 15)	4295	NM_001193282	402160		NM_001193282	ENSG00000206113	CFAP99	-	cilia and flagella associated protein 99	protein-coding
26693	chr10	22637421	22638280	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	76258	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
45941	chr11	121321651	121321980	+	0	NA	Intergenic	L2a|LINE|L2	28947	NM_001024956	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
41949	chr11	67314001	67314550	+	0	NA	Intergenic	Intergenic	-3564	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
221886	chr8	128554001	128554250	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	10554	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
237853	chrX	130118321	130119400	+	0	NA	Intergenic	Intergenic	-7969	NM_001127197	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
73799	chr15	48333671	48333830	+	0	NA	intron (NM_001330286, intron 2 of 6)	intron (NM_001330286, intron 2 of 6)	1553	NM_001948	1854		NM_001948	ENSG00000128951	DUT	BMFDMS|dUTPase	deoxyuridine triphosphatase	protein-coding
120488	chr19	44756771	44756930	+	0	NA	intron (NM_005178, intron 3 of 8)	intron (NM_005178, intron 3 of 8)	-1807	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
66275	chr14	61375251	61375680	+	0	NA	intron (NM_006255, intron 1 of 13)	MSTA|LTR|ERVL-MaLR	54022	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
12072	chr1	98920551	98920650	+	0	NA	intron (NM_001010861, intron 4 of 5)	intron (NM_001010861, intron 4 of 5)	-83676	NR_033940	100129620		NR_033940	ENSG00000232825	PLPPR5-AS1	-	PLPPR5 antisense RNA 1	ncRNA
171834	chr4	685151	685650	+	0	NA	intron (NM_001378059, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	3751	NM_001378060	84179		NM_032219	ENSG00000169026	SLC49A3	LP2561|MFSD7	solute carrier family 49 member 3	protein-coding
234155	chrX	10199251	10199550	+	0	NA	intron (NM_001830, intron 6 of 12)	Tigger9b|DNA|TcMar-Tigger	42425	NM_001830	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
18408	chr1	161439401	161439600	+	0	NA	Intergenic	L1MA4A|LINE|L1	-65957	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
231476	chr9	131351071	131351330	+	0	NA	Intergenic	AluJr|SINE|Alu	-22451	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
227236	chr9	89282351	89282980	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-28530	NM_001827	1164		NM_001827	ENSG00000123975	CKS2	CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding
225944	chr9	40998071	40998530	+	0	NA	intron (NR_156730, intron 2 of 6)	AluSx1|SINE|Alu	6039	NR_034006	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
152121	chr22	19943721	19944380	+	0	NA	intron (NM_000754, intron 1 of 5)	MER31-int|LTR|ERV1	-2232	NM_001352300	10587		NM_006440	ENSG00000184470	TXNRD2	GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2|TXNR2	thioredoxin reductase 2	protein-coding
197637	chr6	83546621	83546880	+	0	NA	Intergenic	L1PA5|LINE|L1	34216	NM_001170423	167681		NM_153362	ENSG00000146250	PRSS35	C6orf158|dJ223E3.1	serine protease 35	protein-coding
67326	chr14	69629901	69630350	+	0	NA	intron (NM_014734, intron 1 of 5)	MIR|SINE|MIR	18529	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
18160	chr1	160777421	160778850	+	0	NA	Intergenic	Intergenic	-18039	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
199439	chr6	117469251	117469750	+	0	NA	Intergenic	MER21-int|LTR|ERVL	-13104	NM_173674	285761		NM_173674	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
209558	chr7	77331471	77332230	+	0	NA	intron (NM_001350897, intron 18 of 29)	intron (NM_001350897, intron 18 of 29)	-83348	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
142120	chr20	2687351	2687450	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5380	NR_138537	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
188746	chr5	157551801	157552600	+	0	NA	intron (NM_033274, intron 3 of 22)	L1MA1|LINE|L1	23575	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
120615	chr19	45035971	45036500	+	0	NA	intron (NM_006509, intron 10 of 10)	AluSx1|SINE|Alu	-2810	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
216220	chr8	12011251	12011350	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-10548	NM_001302695	613211		NM_001033019	ENSG00000205882	DEFB134	-	defensin beta 134	protein-coding
168065	chr3	137460351	137460680	+	0	NA	Intergenic	L1PA3|LINE|L1	-303800	NM_004189	8403		NM_004189	ENSG00000168875	SOX14	SOX28	SRY-box transcription factor 14	protein-coding
203209	chr6	167827501	167828250	+	0	NA	5' UTR (NM_001291964, exon 1 of 33)	5' UTR (NM_001291964, exon 1 of 33)	240	NM_001291964	4301		NM_005936	ENSG00000130396	AFDN	AF6|MLL-AF6|MLLT4|l-afadin	afadin, adherens junction formation factor	protein-coding
181858	chr5	53478371	53478980	+	0	NA	Intergenic	Intergenic	-1954	NM_013409	10468		NM_006350	ENSG00000134363	FST	FS	follistatin	protein-coding
177330	chr4	109798971	109799150	+	0	NA	intron (NM_001375278, intron 1 of 14)	L1M4|LINE|L1	2939	NM_001318057	3426		NM_000204	ENSG00000205403	CFI	AHUS3|ARMD13|C3BINA|C3b-INA|FI|IF|KAF	complement factor I	protein-coding
64656	chr14	31510171	31510400	+	0	NA	Intergenic	Intergenic	-22246	NM_001197184	2856		NM_001197184	ENSG00000214943	GPR33	-	G protein-coupled receptor 33	protein-coding
215641	chr8	231401	233100	+	0	NA	promoter-TSS (NM_001287399)	promoter-TSS (NM_001287399)	50	NM_001287399	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
133207	chr2	113158451	113158630	+	0	NA	Intergenic	Intergenic	-15431	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
45778	chr11	119282451	119283050	+	0	NA	intron (NM_005188, intron 9 of 15)	intron (NM_005188, intron 9 of 15)	30262	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
18195	chr1	160857721	160858180	+	0	NA	intron (NM_001166664, intron 1 of 7)	AluJo|SINE|Alu	4937	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
5990	chr1	26974371	26974530	+	0	NA	Intergenic	AluY|SINE|Alu	-13982	NM_152365	126695		NM_152365	ENSG00000175707	KDF1	C1orf172|ECTD12	keratinocyte differentiation factor 1	protein-coding
208423	chr7	66758601	66759200	+	0	NA	intron (NM_001287061, intron 1 of 8)	L1MD2|LINE|L1	3018	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
92220	chr17	7867751	7868400	+	0	NA	intron (NM_001330111, intron 2 of 4)	L2-1_AMi|LINE|L2	10072	NM_001330110	124637		NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
20570	chr1	198728621	198728880	+	0	NA	intron (NM_002838, intron 16 of 32)	intron (NM_002838, intron 16 of 32)	89710	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
131424	chr2	96287571	96287930	+	0	NA	intron (NM_014014, intron 25 of 44)	intron (NM_014014, intron 25 of 44)	17796	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
96385	chr17	40119421	40119680	+	0	NA	Intergenic	AluSg|SINE|Alu	-2421	NM_001012241	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
166208	chr3	111984701	111985100	+	0	NA	intron (NM_001272069, intron 2 of 5)	intron (NM_001272069, intron 2 of 5)	5874	NM_018394	55347		NM_018394	ENSG00000144827	ABHD10	-	abhydrolase domain containing 10, depalmitoylase	protein-coding
52578	chr12	56171321	56173150	+	0	NA	intron (NM_003075, intron 19 of 27)	AluJr|SINE|Alu	13876	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
43916	chr11	90205901	90206100	+	0	NA	intron (NM_001144073, intron 6 of 9)	intron (NM_001144073, intron 6 of 9)	17049	NM_012124	26973		NM_012124	ENSG00000110172	CHORDC1	CHP1	cysteine and histidine rich domain containing 1	protein-coding
193903	chr6	31624501	31625050	+	0	NA	intron (NM_004638, intron 5 of 30).7	intron (NM_004638, intron 5 of 30).7	1696	NR_002971	677820		NR_002971	ENSG00000200816	SNORA38	ACA38	small nucleolar RNA, H/ACA box 38	snoRNA
174687	chr4	41990071	41991280	+	0	NA	exon (NM_006345, exon 1 of 18)	exon (NM_006345, exon 1 of 18)	145	NM_006345	10463		NM_006345	ENSG00000014824	SLC30A9	BILAPES|C4orf1|GAC63|HUEL|ZNT9	solute carrier family 30 member 9	protein-coding
66755	chr14	64517751	64518480	+	0	NA	intron (NR_110550, intron 3 of 3)	AluSx|SINE|Alu	-12902	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
91557	chr17	5047171	5047930	+	0	NA	Intergenic	LTR106_Mam|LTR|LTR	-12118	NM_001104577	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
78652	chr15	94293401	94293600	+	0	NA	intron (NM_001385002, intron 2 of 23)	intron (NM_001385002, intron 2 of 23)	61939	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
28768	chr10	62042971	62043330	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-6207	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
171007	chr3	194766801	194767030	+	0	NA	intron (NR_146990, intron 2 of 2)	intron (NR_146990, intron 2 of 2)	1794	NR_146990	105374293		NR_146990	ENSG00000230401	LINC01972	-	long intergenic non-protein coding RNA 1972	ncRNA
45258	chr11	117998071	117998480	+	0	NA	intron (NM_001558, intron 6 of 6)	MER112|DNA|hAT-Charlie	11881	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
222098	chr8	130518371	130518530	+	0	NA	Intergenic	MIRb|SINE|MIR	-74776	NM_001362925	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
233496	chr9	138149771	138150550	+	0	NA	promoter-TSS (NR_027156)	promoter-TSS (NR_027156)	47	NR_027156	643224		NR_027156		TUBBP5	-	tubulin beta pseudogene 5	pseudo
19812	chr1	182614651	182615380	+	0	NA	promoter-TSS (NR_036490)	promoter-TSS (NR_036490)	-125	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
28539	chr10	50534871	50535030	+	0	NA	intron (NM_147156, intron 2 of 10)	intron (NM_147156, intron 2 of 10)	89006	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
86332	chr16	66408121	66408800	+	0	NA	promoter-TSS (NR_046242)	promoter-TSS (NR_046242)	-64	NR_046242	100505865		NR_046242		LINC00920	CALIC|LINRIS	long intergenic non-protein coding RNA 920	ncRNA
236325	chrX	69094051	69094230	+	0	NA	Intergenic	Intergenic	71313	NM_145119	64219		NM_022368	ENSG00000181191	PJA1	PRAJA1|RNF70	praja ring finger ubiquitin ligase 1	protein-coding
79600	chr16	1065871	1066230	+	0	NA	non-coding (NR_027242, exon 4 of 4)	non-coding (NR_027242, exon 4 of 4)	-6706	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
194380	chr6	32986421	32986780	+	0	NA	Intergenic	Intergenic	13516	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
97023	chr17	42305251	42306750	+	0	NA	intron (NM_001288719, intron 11 of 17)	intron (NM_001288719, intron 11 of 17)	17944	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
193653	chr6	30883801	30885780	+	0	NA	promoter-TSS (NM_001202523).5	promoter-TSS (NM_001202523).5	-190	NM_001202523	780		NM_001954	ENSG00000204580	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
142674	chr20	6005571	6006530	+	0	NA	promoter-TSS (NR_110101)	promoter-TSS (NR_110101)	-73	NR_136617	54675		NM_019095	ENSG00000088766	CRLS1	C20orf155|CLS|CLS1|COSPD57|GCD10|dJ967N21.6	cardiolipin synthase 1	protein-coding
54842	chr12	95072621	95073900	+	0	NA	intron (NM_003297, intron 1 of 13)	CpG	358	NM_003297	7181		NM_003297	ENSG00000120798	NR2C1	TR2	nuclear receptor subfamily 2 group C member 1	protein-coding
15643	chr1	150728751	150729050	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-8005	NM_032132	84072		NM_032132	ENSG00000143452	HORMAD1	CT46|NOHMA	HORMA domain containing 1	protein-coding
63106	chr13	113302671	113303030	+	0	NA	intron (NM_005561, intron 1 of 8)	MIR3|SINE|MIR	5611	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
186910	chr5	139587471	139587630	+	0	NA	intron (NM_181838, intron 2 of 7)	AluY|SINE|Alu	26211	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
160819	chr3	33044671	33045230	+	0	NA	intron (NM_000404, intron 10 of 15)	intron (NM_000404, intron 10 of 15)	51882	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
202655	chr6	158776471	158776630	+	0	NA	intron (NM_003379, intron 6 of 12)	intron (NM_003379, intron 6 of 12)	-11797	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
170442	chr3	185904671	185905580	+	0	NA	Intergenic	AluSz|SINE|Alu	32889	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
233837	chrX	1497921	1498430	+	0	NA	intron (NM_178129, intron 1 of 1)	AluY|SINE|Alu	39010	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
22157	chr1	212162401	212163100	+	0	NA	Intergenic	Intergenic	71986	NR_125983	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
103839	chr17	79556351	79556950	+	0	NA	intron (NM_001350453, intron 1 of 13)	intron (NM_001350453, intron 1 of 13)	-40502	NM_001082575	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
207732	chr7	48083421	48083900	+	0	NA	Intergenic	Intergenic	-4943	NM_001287426	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
219392	chr8	70571751	70572230	+	0	NA	Intergenic	L1MA7|LINE|L1	35679	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
182241	chr5	57137771	57138880	+	0	NA	Intergenic	Intergenic	-35623	NM_001203246	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
177766	chr4	122710551	122711330	+	0	NA	Intergenic	UCON78|DNA|DNA	21518	NR_024041	729338		NR_024041		CETN4P	-	centrin 4, pseudogene	pseudo
135746	chr2	169562221	169563100	+	0	NA	intron (NM_001322048, intron 3 of 13)	LTR40b|LTR|ERVL	11205	NM_024622	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
75225	chr15	64855471	64855950	+	0	NA	intron (NM_001195059, intron 2 of 4)	intron (NM_001195059, intron 2 of 4)	13795	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
1426	chr1	2583851	2584570	+	0	NA	non-coding (NR_121638, exon 4 of 4)	non-coding (NR_121638, exon 4 of 4)	-2313	NR_036637	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
142773	chr20	11890801	11891400	+	0	NA	intron (NM_181443, intron 1 of 4)	CpG	377	NM_001282552	22903		NM_014962	ENSG00000132640	BTBD3	dJ742J24.1	BTB domain containing 3	protein-coding
193754	chr6	31306771	31307200	+	0	NA	Intergenic	AluY|SINE|Alu	-5348	NR_149115	105375015		NR_149115	ENSG00000256166	LINC02571	-	long intergenic non-protein coding RNA 2571	ncRNA
174719	chr4	42653371	42653530	+	0	NA	intron (NM_001105529, intron 1 of 35)	L2a|LINE|L2	3655	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
153642	chr22	28791171	28791430	+	0	NA	Intergenic	AluJr|SINE|Alu	9272	NM_001079539	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
194234	chr6	32432021	32432330	+	0	NA	Intergenic	Intergenic	-7712	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
10638	chr1	70210251	70210350	+	0	NA	intron (NM_001350606, intron 1 of 12)	AluJo|SINE|Alu	4604	NM_001190987	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
202905	chr6	160015671	160016750	+	0	NA	intron (NM_000876, intron 4 of 47)	intron (NM_000876, intron 4 of 47)	-8546	NR_047514	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
164317	chr3	57747771	57748150	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-8349	NM_001377549	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
36580	chr11	6672621	6673180	+	0	NA	Intergenic	L2c|LINE|L2	10440	NM_022061	63875		NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26|bL17m	mitochondrial ribosomal protein L17	protein-coding
212882	chr7	130875301	130876130	+	0	NA	Intergenic	Intergenic	1095	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
175522	chr4	74398101	74399430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	33620	NM_001432	2069		NM_001432	ENSG00000124882	EREG	EPR|ER|Ep	epiregulin	protein-coding
9725	chr1	53172851	53173450	+	0	NA	Intergenic	Intergenic	-23674	NM_001330589	1376		NM_000098	ENSG00000157184	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
127806	chr2	44479271	44479730	+	0	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	117553	NM_024766	79823		NM_024766	ENSG00000143919	CAMKMT	C2orf34|CLNMT|CaM KMT|Cam|KMT	calmodulin-lysine N-methyltransferase	protein-coding
110248	chr19	1784151	1784450	+	0	NA	intron (NR_047593, intron 28 of 28)	AluJb|SINE|Alu	27976	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
35415	chr11	1403171	1403730	+	0	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	-7020	NM_001282218	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
158579	chr3	4588521	4589030	+	0	NA	intron (NM_002222, intron 4 of 57)	L2a|LINE|L2	95427	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
161604	chr3	43192351	43192880	+	0	NA	Intergenic	Intergenic	-86536	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
586	chr1	1285771	1286250	+	0	NA	non-coding (NR_037668, exon 6 of 17)	non-coding (NR_037668, exon 6 of 17)	5574	NM_001130413	6339		NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	sodium channel epithelial 1 subunit delta	protein-coding
80287	chr16	2250271	2250430	+	0	NA	intron (NM_001178029, intron 2 of 6)	intron (NM_001178029, intron 2 of 6)	1237	NM_001178029	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
59983	chr13	32313601	32313800	+	0	NA	intron (NM_001136571, intron 2 of 5)	intron (NM_001136571, intron 2 of 5)	1663	NM_001136571	646799		NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1 like	protein-coding
162815	chr3	49130571	49130930	+	0	NA	exon (NM_002292, exon 8 of 32)	exon (NM_002292, exon 8 of 32)	2300	NM_002292	3913		NM_002292	ENSG00000172037	LAMB2	LAMS|NPHS5|PIERS	laminin subunit beta 2	protein-coding
44080	chr11	95684621	95685300	+	0	NA	Intergenic	Intergenic	104822	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
156967	chr22	42432351	42432450	+	0	NA	promoter-TSS (NM_001318323)	promoter-TSS (NM_001318323)	3	NM_001318323	150372		NM_145912	ENSG00000235568	NFAM1	CNAIP	NFAT activating protein with ITAM motif 1	protein-coding
164084	chr3	56132521	56132600	+	0	NA	intron (NM_015576, intron 6 of 16)	AluYa8|SINE|Alu	-279966	NR_037502	100500875		NR_037502	ENSG00000264013	MIR3938	-	microRNA 3938	ncRNA
127587	chr2	42805751	42806050	+	0	NA	Intergenic	AluY|SINE|Alu	-13317	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
7691	chr1	35930101	35931770	+	0	NA	promoter-TSS (NM_024852)	promoter-TSS (NM_024852)	-170	NM_024852	192669		NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
188779	chr5	157731151	157732450	+	0	NA	promoter-TSS (NM_001317826)	promoter-TSS (NM_001317826)	1	NM_001317826	54974		NM_017872	ENSG00000113272	THG1L	ICF45|IHG-1|IHG1|SCAR28|THG1|hTHG1	tRNA-histidine guanylyltransferase 1 like	protein-coding
67096	chr14	68282501	68284300	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	345387	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
200659	chr6	137076501	137076780	+	0	NA	Intergenic	Intergenic	-31460	NM_014432	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
130657	chr2	86193621	86194200	+	0	NA	promoter-TSS (NR_039939)	promoter-TSS (NR_039939)	-802	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
129460	chr2	69568521	69569180	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-48679	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
76497	chr15	74932701	74932900	+	0	NA	intron (NM_004255, intron 1 of 4)	AluSx3|SINE|Alu	5273	NM_004255	9377		NM_004255	ENSG00000178741	COX5A	COX|COX-VA|MC4DN20|VA	cytochrome c oxidase subunit 5A	protein-coding
157823	chr22	47193051	47193350	+	0	NA	Intergenic	Intergenic	-152371	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
195672	chr6	38165871	38166530	+	0	NA	Intergenic	Intergenic	-315396	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
94034	chr17	27297351	27298280	+	0	NA	intron (NM_134265, intron 1 of 6)	intron (NM_134265, intron 1 of 6)	3701	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
149002	chr21	14492821	14493080	+	0	NA	intron (NM_001256370, intron 8 of 8)	intron (NM_001256370, intron 8 of 8)	53365	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
161954	chr3	46229051	46229300	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-13206	NM_178328	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
87636	chr16	74542721	74543200	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	64154	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
219143	chr8	66196771	66196930	+	0	NA	non-coding (NR_039979, exon 3 of 3)	non-coding (NR_039979, exon 3 of 3)	4736	NR_039979	100505659		NR_039979	ENSG00000253138	LINC00967	-	long intergenic non-protein coding RNA 967	ncRNA
101447	chr17	67444121	67444380	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-27239	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
93378	chr17	18250051	18250750	+	0	NA	intron (NM_001256265, intron 13 of 28).2	intron (NM_001256265, intron 13 of 28).2	8338	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
231449	chr9	131267821	131268240	+	0	NA	intron (NM_033387, intron 1 of 1)	AluY|SINE|Alu	8480	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
224117	chr9	4661321	4663000	+	0	NA	promoter-TSS (NM_001353489)	promoter-TSS (NM_001353489)	63	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
177798	chr4	123396351	123397080	+	0	NA	promoter-TSS (NM_001258038)	promoter-TSS (NM_001258038)	-80	NM_001258038	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
42369	chr11	68752701	68752900	+	0	NA	Intergenic	Intergenic	-1280	NM_004923	9633		NM_004923	ENSG00000132749	TESMIN	CXCDC2|MTL5|MTLT	testis expressed metallothionein like protein	protein-coding
129791	chr2	71330551	71330850	+	0	NA	Intergenic	Intergenic	-1055	NM_001014972	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
51837	chr12	53459651	53460380	+	0	NA	intron (NM_031989, intron 6 of 14)	AluJb|SINE|Alu	-4453	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
107051	chr18	32140401	32140680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47934	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
211178	chr7	102591001	102591350	+	0	NA	intron (NM_006989, intron 16 of 20)	AluJr|SINE|Alu	-18554	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
217550	chr8	29342101	29342530	+	0	NA	intron (NM_001394, intron 1 of 3)	MIRb|SINE|MIR	6490	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
130907	chr2	87463001	87463500	+	0	NA	intron (NR_024206, intron 1 of 1)	intron (NR_024206, intron 1 of 1)	-6700	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
200909	chr6	139133001	139134300	+	0	NA	Intergenic	MER51A|LTR|ERV1	-1430	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
56610	chr12	118132021	118132280	+	0	NA	Intergenic	Intergenic	-3974	NM_002567	5037		NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
103765	chr17	78979601	78980680	+	0	NA	promoter-TSS (NM_005567)	promoter-TSS (NM_005567)	-217	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
159282	chr3	12969301	12969830	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-1835	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
181677	chr5	50443251	50443430	+	0	NA	Intergenic	Intergenic	-2052	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
179695	chr4	190112371	190112800	+	0	NA	Intergenic	LTR5B|LTR|ERVK	47356	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
48278	chr12	8709551	8709650	+	0	NA	intron (NM_001352271, intron 2 of 6)	intron (NM_001352271, intron 2 of 6)	11609	NR_147946	57494		NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding
27685	chr10	33122121	33122780	+	0	NA	Intergenic	Intergenic	-5643	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
178304	chr4	145176551	145178450	+	0	NA	intron (NM_001366057, intron 1 of 20)	intron (NM_001366057, intron 1 of 20)	658	NM_017493	54726		NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
40980	chr11	65381771	65383030	+	0	NA	promoter-TSS (NM_001300820)	promoter-TSS (NM_001300820)	246	NR_147972	283130		NM_182556	ENSG00000162241	SLC25A45	-	solute carrier family 25 member 45	protein-coding
119993	chr19	41917771	41919350	+	0	NA	intron (NM_001365103, intron 1 of 5)	(AC)n|Simple_repeat|Simple_repeat	9889	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
178031	chr4	139526251	139526350	+	0	NA	intron (NM_030648, intron 4 of 7)	AluJb|SINE|Alu	30469	NM_030648	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
159913	chr3	16937571	16937930	+	0	NA	intron (NM_015184, intron 1 of 5)	intron (NM_015184, intron 1 of 5)	4554	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
51014	chr12	49703321	49704100	+	0	NA	intron (NM_175736, intron 1 of 25)	intron (NM_175736, intron 1 of 25)	3695	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
39439	chr11	60923851	60925730	+	0	NA	intron (NM_017870, intron 1 of 10)	CpG	330	NM_178031	54972		NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
161703	chr3	43621151	43622780	+	0	NA	promoter-TSS (NM_001346466)	promoter-TSS (NM_001346466)	-39	NM_001346466	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
94817	chr17	31317071	31317580	+	0	NA	3' UTR (NM_014210, exon 2 of 2)	3' UTR (NM_014210, exon 2 of 2)	-3271	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
93667	chr17	19229821	19230080	+	0	NA	Intergenic	AluY|SINE|Alu	-7427	NM_014964	22905		NM_014964	ENSG00000072134	EPN2	EHB21	epsin 2	protein-coding
90934	chr17	2613301	2613580	+	0	NA	intron (NM_000430, intron 1 of 10)	intron (NM_000430, intron 1 of 10)	19786	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
100002	chr17	57852471	57852630	+	0	NA	Intergenic	Intergenic	-2506	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
13327	chr1	113780501	113781600	+	0	NA	intron (NM_018364, intron 2 of 6)	intron (NM_018364, intron 2 of 6)	-21162	NM_001323042	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
187121	chr5	140414521	140414780	+	0	NA	intron (NM_020690, intron 1 of 35)	AluJb|SINE|Alu	12817	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
222066	chr8	130321401	130321800	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-25067	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
233468	chr9	137719821	137720280	+	0	NA	intron (NM_024757, intron 3 of 26)	intron (NM_024757, intron 3 of 26)	68356	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
20621	chr1	199040201	199040400	+	0	NA	intron (NR_126351, intron 1 of 2)	intron (NR_126351, intron 1 of 2)	-21336	NR_110525	102800316		NR_110525		LINC01222	TCONS_00000112	long intergenic non-protein coding RNA 1222	ncRNA
154125	chr22	31158921	31159180	+	0	NA	Intergenic	L1MC4|LINE|L1	1069	NR_037496	100500901		NR_037496	ENSG00000264141	MIR3928	mir-3928	microRNA 3928	ncRNA
17309	chr1	156453101	156453380	+	0	NA	Intergenic	L2c|LINE|L2	-23692	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
232151	chr9	134062801	134063000	+	0	NA	intron (NM_007371, intron 1 of 11)	intron (NM_007371, intron 1 of 11)	5126	NM_007371	8019		NM_007371	ENSG00000169925	BRD3	FSHRG2|ORFX|RING3L	bromodomain containing 3	protein-coding
75672	chr15	67820221	67820480	+	0	NA	Intergenic	Intergenic	-5159	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
165718	chr3	102532851	102533290	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	98055	NM_175056	131368		NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida like domain containing 1	protein-coding
39727	chr11	61782201	61782400	+	0	NA	intron (NM_013279, intron 21 of 25)	Charlie15a|DNA|hAT-Charlie	10261	NR_030342	693196		NR_030342	ENSG00000284108	MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
123869	chr19	55271271	55271630	+	0	NA	intron (NM_001130106, intron 5 of 8)	intron (NM_001130106, intron 5 of 8)	8406	NM_001297600	23640		NM_012267	ENSG00000133265	HSPBP1	FES1	HSPA (Hsp70) binding protein 1	protein-coding
210663	chr7	100492601	100492800	+	0	NA	intron (NM_173564, intron 6 of 6)	AluJo|SINE|Alu	8773	NM_173564	222950		NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
207683	chr7	45156601	45156900	+	0	NA	Intergenic	L2b|LINE|L2	-1041	NM_005856	10268		NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
54539	chr12	92134531	92135630	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	6633	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
163307	chr3	50350171	50351750	+	0	NA	promoter-TSS (NM_006545)	promoter-TSS (NM_006545)	98	NM_007022	11068		NM_007022	ENSG00000114395	CYB561D2	101F6|TSCytb|TSP10|XXcos-LUCA11.4	cytochrome b561 family member D2	protein-coding
227762	chr9	93110321	93110800	+	0	NA	intron (NR_160511, intron 3 of 4)	intron (NR_160511, intron 3 of 4)	14343	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
225526	chr9	35738401	35738600	+	0	NA	intron (NM_001330660, intron 13 of 16)	intron (NM_001330660, intron 13 of 16)	5578	NR_106912	102466201		NR_106912	ENSG00000273945	MIR6853	hsa-mir-6853	microRNA 6853	ncRNA
1833	chr1	6251571	6251950	+	0	NA	intron (NM_207370, intron 3 of 5)	intron (NM_207370, intron 3 of 5)	7581	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
46550	chr11	128481021	128481280	+	0	NA	intron (NM_001162422, intron 1 of 3)	intron (NM_001162422, intron 1 of 3)	41160	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
173709	chr4	15764701	15764900	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-13528	NM_001775	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
219290	chr8	69019351	69019550	+	0	NA	intron (NR_039986, intron 2 of 4)	L1PA3|LINE|L1	84740	NR_039986	100505718		NR_039986	ENSG00000253658	LINC01592	-	long intergenic non-protein coding RNA 1592	ncRNA
211566	chr7	105656771	105657500	+	0	NA	intron (NM_001318229, intron 3 of 9)	intron (NM_001318229, intron 3 of 9)	22020	NM_001318229	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
28842	chr10	62492001	62492230	+	0	NA	Intergenic	Intergenic	-116988	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
73681	chr15	44785651	44785750	+	0	NA	Intergenic	Intergenic	49172	NM_001301145	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
158199	chr22	50246601	50247100	+	0	NA	intron (NM_001159286, intron 14 of 18)	intron (NM_001159286, intron 14 of 18)	-1827	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
118119	chr19	34731251	34731900	+	0	NA	Intergenic	Intergenic	-2668	NM_001145665	339318		NM_001029997	ENSG00000197841	ZNF181	HHZ181	zinc finger protein 181	protein-coding
209414	chr7	76351621	76352300	+	0	NA	intron (NM_012479, intron 1 of 1)	MER1A|DNA|hAT-Charlie	7031	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
137614	chr2	197302471	197302630	+	0	NA	promoter-TSS (NR_046837)	promoter-TSS (NR_046837)	-31	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
55483	chr12	104722571	104722730	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	131017	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
111189	chr19	3433951	3434050	+	0	NA	intron (NM_205843, intron 4 of 10)	intron (NM_205843, intron 4 of 10)	46525	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
87102	chr16	68538751	68540930	+	0	NA	intron (NM_001305203, intron 2 of 4)	intron (NM_001305203, intron 2 of 4)	549	NM_001305208	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
86045	chr16	57555751	57556050	+	0	NA	intron (NM_153837, intron 1 of 11)	MSTA|LTR|ERVL-MaLR	13257	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
205393	chr7	16110871	16111230	+	0	NA	intron (NR_160656, intron 7 of 7)	L1MA7|LINE|L1	-99436	NR_038946	100506025		NR_038946	ENSG00000229688	CRPPA-AS1	ISPD-AS1	CRPPA antisense RNA 1	ncRNA
54768	chr12	94140651	94141100	+	0	NA	Intergenic	Intergenic	-7702	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
22119	chr1	211698401	211699250	+	0	NA	Intergenic	Intergenic	23063	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
158042	chr22	49937501	49938150	+	0	NA	Intergenic	Intergenic	19191	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
220446	chr8	100316921	100317180	+	0	NA	intron (NM_001280539, intron 1 of 10)	LTR12C|LTR|ERV1	-7097	NM_183419	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
139483	chr2	224449571	224449730	+	0	NA	Intergenic	Intergenic	-47543	NM_001122779	79843		NM_024785	ENSG00000124019	FAM124B	-	family with sequence similarity 124 member B	protein-coding
12194	chr1	100379701	100379900	+	0	NA	intron (NM_001319210, intron 3 of 16)	MSTB1|LTR|ERVL-MaLR	27294	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
121848	chr19	48205551	48205850	+	0	NA	intron (NM_001351787, intron 10 of 10)	MIR|SINE|MIR	35020	NM_199341	374920		NM_199341	ENSG00000185453	ZSWIM9	C19orf68	zinc finger SWIM-type containing 9	protein-coding
183374	chr5	77379471	77380030	+	0	NA	intron (NM_001376071, intron 9 of 20)	intron (NM_001376071, intron 9 of 20)	112566	NM_018268	55255		NM_018268	ENSG00000164253	WDR41	MSTP048	WD repeat domain 41	protein-coding
35288	chr11	968121	968380	+	0	NA	intron (NR_144509, intron 2 of 20)	intron (NR_144509, intron 2 of 20)	42380	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
199125	chr6	111700101	111700630	+	0	NA	intron (NM_001370529, intron 6 of 11)	intron (NM_001370529, intron 6 of 11)	58766	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
27583	chr10	32376051	32376550	+	0	NA	intron (NR_168507, intron 1 of 1)	intron (NR_168507, intron 1 of 1)	2469	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
214152	chr7	144367251	144367550	+	0	NA	intron (NM_005435, intron 5 of 14)	intron (NM_005435, intron 5 of 14)	3767	NR_033942	728377		NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor 34, pseudogene	pseudo
129873	chr2	73086721	73086980	+	0	NA	intron (NM_001371272, intron 3 of 5)	intron (NM_001371272, intron 3 of 5)	-15138	NM_001371740	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
128756	chr2	62199501	62199800	+	0	NA	intron (NM_006577, intron 1 of 1)	intron (NM_006577, intron 1 of 1)	3535	NM_006577	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
41642	chr11	66482151	66482880	+	0	NA	intron (NM_001256670, intron 2 of 16)	intron (NM_001256670, intron 2 of 16)	2081	NM_130443	10072		NM_005700	ENSG00000254986	DPP3	DPPIII	dipeptidyl peptidase 3	protein-coding
98846	chr17	48440901	48442180	+	0	NA	Intergenic	Intergenic	-3293	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
207784	chr7	50215201	50215400	+	0	NA	Intergenic	Intergenic	-88764	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
210764	chr7	100689521	100689980	+	0	NA	intron (NR_164719, intron 1 of 26)	intron (NR_164719, intron 1 of 26)	4500	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
26829	chr10	24618701	24619130	+	0	NA	intron (NR_160021, intron 9 of 26)	L2a|LINE|L2	3928	NR_160025	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
200211	chr6	131250101	131250500	+	0	NA	promoter-TSS (NM_138633)	promoter-TSS (NM_138633)	-104	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
72212	chr15	30176301	30176500	+	0	NA	Intergenic	Intergenic	-19636	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
198053	chr6	90200001	90200200	+	0	NA	intron (NM_021813, intron 4 of 8)	Charlie1|DNA|hAT-Charlie	96743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
194913	chr6	34771251	34771550	+	0	NA	intron (NR_029472, intron 4 of 4)	Tigger13a|DNA|TcMar-Tigger	13895	NM_003093	6631		NM_003093	ENSG00000124562	SNRPC	U1C|Yhc1	small nuclear ribonucleoprotein polypeptide C	protein-coding
186383	chr5	135029101	135029500	+	0	NA	exon (NM_002653, exon 3 of 3)	exon (NM_002653, exon 3 of 3)	-3974	NR_161235	100996485		NR_161235	ENSG00000224186	PITX1-AS1	C5orf66	PITX1 antisense RNA 1	ncRNA
31931	chr10	100563071	100563880	+	0	NA	Intergenic	Intergenic	27532	NM_017902	55662		NM_017902	ENSG00000166135	HIF1AN	FIH1	hypoxia inducible factor 1 subunit alpha inhibitor	protein-coding
35939	chr11	2465501	2466030	+	0	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	4311	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
212834	chr7	130493121	130493580	+	0	NA	intron (NM_002402, intron 1 of 11)	intron (NM_002402, intron 1 of 11)	1265	NM_002402	4232		NM_002402	ENSG00000106484	MEST	PEG1	mesoderm specific transcript	protein-coding
194282	chr6	32641551	32642480	+	0	NA	exon (NM_002122, exon 3 of 5)	exon (NM_002122, exon 3 of 5)	4609	NM_002122	3117		NM_002122	ENSG00000196735	HLA-DQA1	CELIAC1|DQ-A1|DQA1|HLA-DQA|HLA-DQA1*|HLA-DQB1	major histocompatibility complex, class II, DQ alpha 1	protein-coding
91519	chr17	4965321	4965600	+	0	NA	intron (NM_004890, intron 1 of 6)	L2c|LINE|L2	2357	NM_004890	9552		NM_004890	ENSG00000091640	SPAG7	ACRP|FSA-1	sperm associated antigen 7	protein-coding
51966	chr12	53933671	53934450	+	0	NA	Intergenic	Intergenic	-4771	NM_017410	3229		NM_017410	ENSG00000123364	HOXC13	ECTD9|HOX3|HOX3G	homeobox C13	protein-coding
95511	chr17	36530651	36531230	+	0	NA	intron (NM_025109, intron 3 of 21)	AluYg6|SINE|Alu	-3822	NM_001346755	284098		NM_178517	ENSG00000277161	PIGW	Gwt1|HPMRS5	phosphatidylinositol glycan anchor biosynthesis class W	protein-coding
137713	chr2	197520071	197520430	+	0	NA	intron (NM_001204094, intron 1 of 7)	AluY|SINE|Alu	3952	NM_001204094	25843		NM_015387	ENSG00000115540	MOB4	2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3	MOB family member 4, phocein	protein-coding
32422	chr10	102477901	102478100	+	0	NA	TTS (NM_024789)	TTS (NM_024789)	16605	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
47973	chr12	6880321	6881050	+	0	NA	intron (NR_135083, intron 2 of 3)	AluJr|SINE|Alu	-3296	NR_002803	283345		NR_002803	ENSG00000240370	RPL13P5	RPL13-2|RPL13L|RPL13_4_1199|RRPL13L	ribosomal protein L13 pseudogene 5	pseudo
56884	chr12	120301121	120301380	+	0	NA	intron (NM_001385735, intron 1 of 3)	AluSc8|SINE|Alu	-1071	NM_001385734	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
173631	chr4	13481671	13482030	+	0	NA	intron (NM_001017979, intron 1 of 6)	intron (NM_001017979, intron 1 of 6)	2490	NM_001017979	9364		NM_004249	ENSG00000157869	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
172062	chr4	1024371	1025080	+	0	NA	intron (NM_001370296, intron 6 of 6)	CpG-20788	12261	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
140430	chr2	233118251	233118830	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	58198	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
159380	chr3	13386071	13386230	+	0	NA	intron (NM_024923, intron 6 of 39)	L1MB3|LINE|L1	34172	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
40145	chr11	62847751	62848330	+	0	NA	Intergenic	AluJr4|SINE|Alu	4995	NR_000008	9304		NR_000008	ENSG00000277194	SNORD22	RNU22|U22	small nucleolar RNA, C/D box 22	snoRNA
235294	chrX	42398951	42399600	+	0	NA	Intergenic	Intergenic	378888	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
164032	chr3	53259001	53259200	+	0	NA	Intergenic	MER21A|LTR|ERVL	-2986	NM_001258028	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
142891	chr20	17957521	17958100	+	0	NA	intron (NM_001282454, intron 1 of 12)	intron (NM_001282454, intron 1 of 12)	5136	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
83092	chr16	22442951	22443950	+	0	NA	intron (NR_027154, intron 1 of 28)	AluSz6|SINE|Alu	-5735	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
168476	chr3	143168751	143169050	+	0	NA	Intergenic	LTR78B|LTR|ERV1	49129	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
21207	chr1	204076371	204076530	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	3335	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
17869	chr1	159944201	159944630	+	0	NA	intron (NM_001135050, intron 1 of 20)	intron (NM_001135050, intron 1 of 20)	1198	NM_001135050	57549		NM_020789	ENSG00000085552	IGSF9	FP18798|IGSF9A|Nrt1	immunoglobulin superfamily member 9	protein-coding
246	chr1	909651	909750	+	0	NA	Intergenic	CpG	9992	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
152890	chr22	22710651	22711090	+	0	NA	Intergenic	Intergenic	64558	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
30950	chr10	87735221	87735480	+	0	NA	intron (NM_001015880, intron 9 of 12)	intron (NM_001015880, intron 9 of 12)	75472	NM_001015880	9060		NM_004670	ENSG00000198682	PAPSS2	ATPSK2|BCYM4|SK2	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding
112810	chr19	7504001	7504200	+	0	NA	intron (NM_198534, intron 2 of 8)	intron (NM_198534, intron 2 of 8)	6552	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
224471	chr9	15729651	15729750	+	0	NA	exon (NM_001355547, exon 15 of 25)	exon (NM_001355547, exon 15 of 25)	165722	NM_001355547	203238		NM_173550	ENSG00000164989	CCDC171	C9orf93|bA536D16.1|bA778P13.1	coiled-coil domain containing 171	protein-coding
63632	chr14	20683601	20684980	+	0	NA	promoter-TSS (NM_001282193)	promoter-TSS (NM_001282193)	113	NM_001145	283		NM_001145	ENSG00000214274	ANG	ALS9|HEL168|RAA1|RNASE4|RNASE5	angiogenin	protein-coding
186089	chr5	134109971	134110800	+	0	NA	Intergenic	Intergenic	-4296	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
15545	chr1	150538901	150539300	+	0	NA	Intergenic	Intergenic	-10308	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
43064	chr11	74467121	74467580	+	0	NA	intron (NM_005472, intron 1 of 2)	CpG	199	NM_005472	10008		NM_005472	ENSG00000175538	KCNE3	BRGDA6|HOKPP|HYPP|MiRP2	potassium voltage-gated channel subfamily E regulatory subunit 3	protein-coding
5540	chr1	25818921	25820300	+	0	NA	promoter-TSS (NM_001099627)	promoter-TSS (NM_001099627)	-296	NM_001099627	56181		NM_019557	ENSG00000117640	MTFR1L	FAM54B|HYST1888|MST116|MSTP116	mitochondrial fission regulator 1 like	protein-coding
202036	chr6	153000171	153001300	+	0	NA	intron (NM_001301872, intron 1 of 1)	L2|LINE|L2	1974	NM_001301047	54516		NM_019041	ENSG00000112031	MTRF1L	HMRF1L|MRF1L|mtRF1a	mitochondrial translation release factor 1 like	protein-coding
150431	chr21	42417301	42418230	+	0	NA	intron (NM_001243467, intron 5 of 11)	intron (NM_001243467, intron 5 of 11)	13863	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
198359	chr6	105399871	105400030	+	0	NA	intron (NM_002726, intron 1 of 14)	intron (NM_002726, intron 1 of 14)	3132	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
149381	chr21	31016851	31016950	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	21576	NM_001099219	728299		NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
105992	chr18	7460521	7460600	+	0	NA	intron (NM_001364581, intron 1 of 1)	intron (NM_001364581, intron 1 of 1)	446	NM_001364581	112577592		NM_001364581	ENSG00000286126	LOC112577592	-	uncharacterized LOC112577592	ncRNA
231065	chr9	129641471	129643250	+	0	NA	promoter-TSS (NM_001202403)	promoter-TSS (NM_001202403)	-191	NM_001202403	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
94859	chr17	31508021	31509900	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	20852	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
66929	chr14	65438401	65438750	+	0	NA	intron (NM_001371534, intron 2 of 11)	MLT1J|LTR|ERVL-MaLR	25845	NM_001371533	2530		NM_004480	ENSG00000033170	FUT8	CDGF|CDGF1	fucosyltransferase 8	protein-coding
144722	chr20	36569821	36570280	+	0	NA	intron (NR_109939, intron 2 of 4)	intron (NR_109939, intron 2 of 4)	3225	NR_109939	101926987		NR_109939	ENSG00000232907	DLGAP4-AS1	CCAT7	DLGAP4 antisense RNA 1	ncRNA
109430	chr19	709451	709550	+	0	NA	intron (NM_002579, intron 1 of 8)	CpG	565	NM_002579	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
234881	chrX	30593801	30594030	+	0	NA	Intergenic	AluJb|SINE|Alu	-16149	NM_025159	80231		NM_025159	ENSG00000120280	TASL	CXorf21	TLR adaptor interacting with endolysosomal SLC15A4	protein-coding
159234	chr3	12913321	12913780	+	0	NA	exon (NM_001134382, exon 9 of 14)	exon (NM_001134382, exon 9 of 14)	-28339	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
213986	chr7	142813351	142813830	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-41424	NM_001280794	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
39915	chr11	62518921	62519180	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	26614	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
189064	chr5	170264851	170265550	+	0	NA	intron (NM_005565, intron 10 of 20)	AluY|SINE|Alu	32194	NM_001305393	133874		NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
171750	chr3	198103911	198104350	+	0	NA	Intergenic	Intergenic	-23459	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
44637	chr11	110174051	110174430	+	0	NA	TTS (NM_001260493)	TTS (NM_001260493)	80848	NM_033390	85463		NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
205142	chr7	7181701	7183680	+	0	NA	5' UTR (NM_020156, exon 1 of 4)	5' UTR (NM_020156, exon 1 of 4)	146	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
158924	chr3	10022271	10022680	+	0	NA	intron (NR_002786, intron 2 of 2)	AluJr|SINE|Alu	3661	NR_002786	152302		NR_002786	ENSG00000186162	CIDECP1	CICE|CIDECP	CIDEC pseudogene 1	pseudo
2750	chr1	10679301	10680450	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	116771	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
211598	chr7	105823071	105823330	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	53385	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
60265	chr13	40603521	40603780	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	62991	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
145519	chr20	44067351	44067730	+	0	NA	intron (NM_032883, intron 9 of 9)	intron (NM_032883, intron 9 of 9)	119648	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
110537	chr19	2087251	2088250	+	0	NA	intron (NM_130807, intron 1 of 4)	intron (NM_130807, intron 1 of 4)	8576	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
223107	chr8	143452401	143453230	+	0	NA	intron (NM_015117, intron 9 of 11)	L1MDa|LINE|L1	-22083	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
205099	chr7	6753801	6754200	+	0	NA	promoter-TSS (NM_001099697).2	promoter-TSS (NM_001099697).2	-109	NM_001099697	728194		NM_001099697	ENSG00000169402	RSPH10B2	-	radial spoke head 10 homolog B2	protein-coding
34050	chr10	124739821	124740370	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	4283	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
123735	chr19	55060551	55060850	+	0	NA	intron (NM_138412, intron 2 of 7).5	AluSx|SINE|Alu	2448	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
135097	chr2	157364371	157364600	+	0	NA	Intergenic	L2a|LINE|L2	16024	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
6923	chr1	31647351	31647650	+	0	NA	Intergenic	L2c|LINE|L2	-2624	NM_012392	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
72724	chr15	38687171	38687530	+	0	NA	Intergenic	MER34A1|LTR|ERV1	-9248	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
16139	chr1	153667151	153667250	+	0	NA	intron (NM_004515, intron 6 of 13)	AluJb|SINE|Alu	3793	NM_004515	3608		NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
137136	chr2	191041701	191042000	+	0	NA	intron (NM_003151, intron 14 of 23)	HAL1|LINE|L1	20324	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
60290	chr13	40629521	40630500	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	36631	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
124255	chr19	57615501	57615700	+	0	NA	intron (NM_003435, intron 1 of 2)	LTR10G|LTR|ERV1	1358	NM_003435	7693		NM_003435	ENSG00000213762	ZNF134	pHZ-15	zinc finger protein 134	protein-coding
237630	chrX	124022151	124022250	+	0	NA	intron (NM_001042751, intron 2 of 33)	AluSx|SINE|Alu	60494	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
175277	chr4	67533821	67534330	+	0	NA	intron (NR_155754, intron 4 of 18)	intron (NR_155754, intron 4 of 18)	11428	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
117361	chr19	19554101	19554880	+	0	NA	Intergenic	Intergenic	16225	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
100381	chr17	60137471	60137900	+	0	NA	Intergenic	AluSz6|SINE|Alu	-12288	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
68942	chr14	91392251	91392550	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	25420	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
82077	chr16	14194401	14194800	+	0	NA	intron (NM_001365415, intron 1 of 7)	intron (NM_001365415, intron 1 of 7)	7914	NM_001365416	57496		NM_014048	ENSG00000186260	MRTFB	MKL2|MRTF-B|NPD001	myocardin related transcription factor B	protein-coding
42809	chr11	72815501	72816550	+	0	NA	intron (NM_033388, intron 1 of 17)	AluY|SINE|Alu	1614	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
71302	chr14	105313771	105315800	+	0	NA	promoter-TSS (NM_015197)	promoter-TSS (NM_015197)	37	NM_015197	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
184872	chr5	112492301	112492550	+	0	NA	Intergenic	Intergenic	72842	NR_027706	54508		NM_019033	ENSG00000278921	EPB41L4A-DT	EPB41L4A-AS2	EPB41L4A divergent transcript	ncRNA
49441	chr12	24837771	24837930	+	0	NA	intron (NM_001178091, intron 6 of 9)	intron (NM_001178091, intron 6 of 9)	64372	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
17671	chr1	157698721	157698980	+	0	NA	intron (NM_052939, intron 3 of 14)	intron (NM_052939, intron 3 of 14)	1919	NR_135217	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
104389	chr17	81037271	81038050	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	2509	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
74946	chr15	63770351	63771280	+	0	NA	intron (NM_003922, intron 2 of 77)	intron (NM_003922, intron 2 of 77)	63133	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
172178	chr4	1234821	1235400	+	0	NA	intron (NM_001377193, intron 3 of 9)	L1MD2|LINE|L1	13618	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
234387	chrX	16484321	16484580	+	0	NA	Intergenic	Intergenic	142635	NR_039762	100616428		NR_039762	ENSG00000265144	MIR548AM	-	microRNA 548am	ncRNA
75979	chr15	70526351	70526950	+	0	NA	Intergenic	Intergenic	-20722	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
89817	chr16	89565221	89566730	+	0	NA	3' UTR (NM_001243131, exon 7 of 7)	3' UTR (NM_001243131, exon 7 of 7)	4545	NR_002450	606500		NR_002450		SNORD68	HBII-202	small nucleolar RNA, C/D box 68	snoRNA
35106	chr11	644921	645480	+	0	NA	intron (NM_001367390, intron 11 of 11)	intron (NM_001367390, intron 11 of 11)	7931	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
71971	chr15	25435101	25435650	+	0	NA	intron (NM_001354507, intron 1 of 14)	L2b|LINE|L2	2854	NM_001354526	7337		NM_000462	ENSG00000114062	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A|PIX1	ubiquitin protein ligase E3A	protein-coding
38123	chr11	35242521	35243500	+	0	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	80060	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
16337	chr1	154268051	154268150	+	0	NA	intron (NM_001375615, intron 25 of 27)	AluSp|SINE|Alu	-4529	NM_001018837	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
150396	chr21	42302121	42302530	+	0	NA	Intergenic	Intergenic	13084	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
26560	chr10	21661271	21661430	+	0	NA	intron (NR_136736, intron 10 of 25)	L1MCa|LINE|L1	127118	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
110316	chr19	1849821	1850380	+	0	NA	Intergenic	Intergenic	-1617	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
136971	chr2	190427071	190427380	+	0	NA	intron (NM_017694, intron 2 of 7)	L1MD1|LINE|L1	18367	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
213578	chr7	139360301	139361580	+	0	NA	intron (NM_016019, intron 1 of 9)	intron (NM_016019, intron 1 of 9)	1046	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
117867	chr19	32570151	32570930	+	0	NA	Intergenic	Intergenic	-10650	NM_004708	9141		NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
176625	chr4	99808321	99808650	+	0	NA	Intergenic	Intergenic	-8342	NM_001306151	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
147342	chr20	58231551	58231850	+	0	NA	Intergenic	Intergenic	-3047	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
100887	chr17	64387271	64388230	+	0	NA	intron (NM_000442, intron 2 of 15)	intron (NM_000442, intron 2 of 15)	3110	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
230889	chr9	129209571	129209730	+	0	NA	Intergenic	L2b|LINE|L2	-31389	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
203911	chr7	1505471	1505980	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1336	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
134030	chr2	131088901	131089500	+	0	NA	5' UTR (NM_001321743, exon 3 of 9)	5' UTR (NM_001321743, exon 3 of 9)	3962	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
26595	chr10	22231721	22231980	+	0	NA	Intergenic	Intergenic	-20222	NR_038921	100130992		NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
116923	chr19	18829301	18829700	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-2459	NM_001297549	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
220479	chr8	100462721	100463080	+	0	NA	Intergenic	Intergenic	80137	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
126721	chr2	30182921	30183550	+	0	NA	Intergenic	AluY|SINE|Alu	-4199	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
142397	chr20	3831221	3831550	+	0	NA	Intergenic	AluY|SINE|Alu	10838	NM_001204447	55317		NM_018347	ENSG00000125843	AP5S1	C20orf29	adaptor related protein complex 5 subunit sigma 1	protein-coding
175026	chr4	52665551	52665980	+	0	NA	Intergenic	Intergenic	6359	NR_125363	643783		NR_125363	ENSG00000248866	USP46-DT	USP46-AS1	USP46 divergent transcript	ncRNA
207298	chr7	44015151	44015680	+	0	NA	intron (NR_003655, intron 2 of 15)	intron (NR_003655, intron 2 of 15)	3779	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
71748	chr15	20761451	20761950	+	0	NA	Intergenic	Intergenic	-5549	NR_027992	606		NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
63415	chr13	114084371	114085450	+	0	NA	intron (NM_001320821, intron 1 of 25).2	CpG	-6955	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
154439	chr22	35354151	35354750	+	0	NA	Intergenic	Intergenic	-17651	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
43998	chr11	94512221	94513680	+	0	NA	intron (NM_001190462, intron 1 of 3)	(AC)n|Simple_repeat|Simple_repeat	489	NM_001190462	643037		NM_001190462	ENSG00000257057	C11orf97	LINC01171	chromosome 11 open reading frame 97	protein-coding
70046	chr14	100117771	100118130	+	0	NA	intron (NM_016337, intron 3 of 13)	L2a|LINE|L2	8295	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
69694	chr14	98172101	98172630	+	0	NA	Intergenic	Intergenic	-194241	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
188097	chr5	150356951	150358930	+	0	NA	intron (NM_001371623, intron 1 of 26)	(GCGGCCC)n|Simple_repeat|Simple_repeat	243	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
52346	chr12	55068351	55068750	+	0	NA	Intergenic	Intergenic	48576	NM_021191	58158		NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding
90700	chr17	1763571	1763730	+	0	NA	intron (NM_001329903, intron 1 of 7)	intron (NM_001329903, intron 1 of 7)	846	NM_001329903	5176		NM_002615	ENSG00000132386	SERPINF1	EPC-1|OI12|OI6|PEDF|PIG35	serpin family F member 1	protein-coding
8314	chr1	40078551	40079230	+	0	NA	intron (NM_001363695, intron 6 of 7)	L1PA17|LINE|L1	18362	NM_000310	5538		NM_000310	ENSG00000131238	PPT1	CLN1|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding
149887	chr21	36004751	36004850	+	0	NA	promoter-TSS (NR_110418)	promoter-TSS (NR_110418)	-133	NR_110418	101928269		NR_110418		LOC101928269	-	uncharacterized LOC101928269	ncRNA
89034	chr16	88426521	88427080	+	0	NA	intron (NM_001367624, intron 2 of 2)	intron (NM_001367624, intron 2 of 2)	-26480	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
201352	chr6	144630971	144631130	+	0	NA	intron (NM_001375323, intron 1 of 24)	intron (NM_001375323, intron 1 of 24)	47902	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
38788	chr11	47233521	47234300	+	0	NA	intron (NM_000107, intron 4 of 9)	intron (NM_000107, intron 4 of 9)	-14390	NM_001251935	10062		NM_005693	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	nuclear receptor subfamily 1 group H member 3	protein-coding
193830	chr6	31492971	31493130	+	0	NA	intron (NR_149132, intron 1 of 1)	AluSx1|SINE|Alu	1744	NR_149132	102725068		NR_149132	ENSG00000286940	MICB-DT	TCONS_00012692	MICB divergent transcript	ncRNA
37690	chr11	27939451	27939650	+	0	NA	Intergenic	L1PA3|LINE|L1	-117265	NR_030341	693195		NR_030341	ENSG00000207874	MIR610	MIRN610|hsa-mir-610	microRNA 610	ncRNA
202584	chr6	158694251	158694350	+	0	NA	intron (NM_001318745, intron 3 of 14)	AluSz6|SINE|Alu	30897	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
207266	chr7	43954501	43954750	+	0	NA	3' UTR (NM_015983, exon 7 of 7)	3' UTR (NM_015983, exon 7 of 7)	28189	NM_015983	51619		NM_015983	ENSG00000078967	UBE2D4	HBUCE1	ubiquitin conjugating enzyme E2 D4 (putative)	protein-coding
222475	chr8	140233401	140233730	+	0	NA	intron (NR_164662, intron 15 of 22)	(TC)n|Simple_repeat|Simple_repeat	-133030	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
210286	chr7	99426901	99427500	+	0	NA	intron (NM_015545, intron 5 of 7)	SVA_D|Retroposon|SVA	11598	NM_015545	26024		NM_015545	ENSG00000106246	PTCD1	-	pentatricopeptide repeat domain 1	protein-coding
204219	chr7	2526471	2527250	+	0	NA	promoter-TSS (NR_039791)	promoter-TSS (NR_039791)	-214	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
155335	chr22	38222721	38223950	+	0	NA	intron (NM_001195071, intron 8 of 8)	intron (NM_001195071, intron 8 of 8)	1385	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
134217	chr2	134671621	134672430	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	46975	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
238703	chrX	154085671	154086230	+	0	NA	intron (NM_001316337, intron 2 of 4)	AluY|SINE|Alu	11019	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
117438	chr19	19652471	19652830	+	0	NA	exon (NM_020410, exon 16 of 26)	exon (NM_020410, exon 16 of 26)	-8993	NM_001288999	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
50794	chr12	49053101	49053680	+	0	NA	intron (NM_003482, intron 7 of 54)	intron (NM_003482, intron 7 of 54)	7404	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
23542	chr1	229248901	229249480	+	0	NA	Intergenic	Intergenic	-21872	NR_073545	5867		NM_004578	ENSG00000168118	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
16906	chr1	155876601	155877200	+	0	NA	intron (NM_152280, intron 2 of 3)	AluSx1|SINE|Alu	17333	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
1255	chr1	2297971	2298130	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	54611	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
187890	chr5	148820601	148821050	+	0	NA	Intergenic	Intergenic	-5786	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
235788	chrX	49163251	49164880	+	0	NA	intron (NM_024859, intron 2 of 5)	intron (NM_024859, intron 2 of 5)	1222	NM_024859	79917		NM_024859	ENSG00000269313	MAGIX	JM10|PDZX	MAGI family member, X-linked	protein-coding
149506	chr21	32618071	32618230	+	0	NA	Intergenic	Intergenic	-5279	NM_001350335	56683		NM_017835	ENSG00000159079	CFAP298	C21orf48|C21orf59|CILD26|DNAAF16|FBB18|Kur	cilia and flagella associated protein 298	protein-coding
196462	chr6	43518401	43518880	+	0	NA	intron (NM_203290, intron 2 of 8)	L2c|LINE|L2	1551	NM_203290	9533		NM_004875	ENSG00000171453	POLR1C	AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3	RNA polymerase I and III subunit C	protein-coding
101704	chr17	68495821	68496500	+	0	NA	intron (NM_001278433, intron 1 of 10)	AluSz|SINE|Alu	-15620	NM_212471	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
132513	chr2	106095421	106096400	+	0	NA	intron (NM_001377504, intron 12 of 12)	intron (NM_001377504, intron 12 of 12)	30222	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
163665	chr3	52223071	52223630	+	0	NA	exon (NM_017442, exon 2 of 2)	exon (NM_017442, exon 2 of 2)	2813	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
37665	chr11	22875901	22876180	+	0	NA	Intergenic	Intergenic	-15566	NM_001195637	100500938		NM_001195637	ENSG00000255359	CCDC179	-	coiled-coil domain containing 179	protein-coding
53209	chr12	62272971	62273530	+	0	NA	intron (NM_001351164, intron 1 of 21)	L2c|LINE|L2	12846	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
102928	chr17	76584601	76585150	+	0	NA	intron (NM_006456, intron 1 of 8)	intron (NM_006456, intron 1 of 8)	985	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
216322	chr8	12758351	12759180	+	0	NA	Intergenic	Intergenic	-3239	NM_152271	91694		NM_152271	ENSG00000154359	LONRF1	RNF191	LON peptidase N-terminal domain and ring finger 1	protein-coding
181394	chr5	40683471	40683980	+	0	NA	intron (NM_000958, intron 2 of 2)	intron (NM_000958, intron 2 of 2)	3810	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
10282	chr1	64836371	64836780	+	0	NA	intron (NM_001321857, intron 22 of 24)	intron (NM_001321857, intron 22 of 24)	91500	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
144895	chr20	36936501	36937530	+	0	NA	intron (NM_001363733, intron 3 of 15)	AluSx1|SINE|Alu	14693	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
177232	chr4	108601271	108602100	+	0	NA	intron (NR_026968, intron 1 of 3)	L1MD2|LINE|L1	18772	NR_026968	285456		NM_182591	ENSG00000234492	RPL34-DT	RPL34-AS1	RPL34 divergent transcript	ncRNA
57227	chr12	121530521	121531380	+	0	NA	intron (NM_001005366, intron 8 of 22)	MIR3|SINE|MIR	49296	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
212007	chr7	114786421	114786680	+	0	NA	Intergenic	Intergenic	133205	NR_037439	100500896		NR_037439	ENSG00000272230	MIR3666	-	microRNA 3666	ncRNA
190156	chr5	178122201	178122400	+	0	NA	3' UTR (NM_015111, exon 5 of 5)	3' UTR (NM_015111, exon 5 of 5)	-8661	NM_001288795	64777		NM_022762	ENSG00000145916	RMND5B	GID2|GID2B	required for meiotic nuclear division 5 homolog B	protein-coding
189408	chr5	172771901	172774550	+	0	NA	Intergenic	AluSc|SINE|Alu	-2030	NM_004417	1843		NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
23054	chr1	226624571	226624730	+	0	NA	Intergenic	Intergenic	50418	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
101603	chr17	68168271	68169680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-29685	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
22317	chr1	213852001	213852730	+	0	NA	intron (NR_037850, intron 4 of 5)	intron (NR_037850, intron 4 of 5)	-72384	NR_046189	100861504		NR_046189		LINC00538	PROX1UT|Yiya	long intergenic non-protein coding RNA 538	ncRNA
239395	chrY	21737101	21737330	+	0	NA	Intergenic	Intergenic	-142549	NR_001537	83868		NM_031931	ENSG00000184991	TTTY13	NCRNA00136|TTY13	testis expressed transcript, Y-linked 13	ncRNA
196575	chr6	44149921	44150330	+	0	NA	intron (NM_001318792, intron 16 of 23)	intron (NM_001318792, intron 16 of 23)	-8695	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105485	chr17	83076101	83076500	+	0	NA	Intergenic	Intergenic	-3309	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
104083	chr17	80253871	80254180	+	0	NA	TTS (NM_173626)	TTS (NM_173626)	-6827	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
238604	chrX	153926001	153927500	+	0	NA	promoter-TSS (NM_001666)	promoter-TSS (NM_001666)	-486	NM_001666	393		NM_001666	ENSG00000089820	ARHGAP4	C1|RGC1|RhoGAP4|SrGAP4|p115	Rho GTPase activating protein 4	protein-coding
125574	chr2	16608721	16609360	+	0	NA	intron (NM_030797, intron 2 of 11)	intron (NM_030797, intron 2 of 11)	56794	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
156187	chr22	40258051	40258880	+	0	NA	intron (NM_015088, intron 3 of 20)	intron (NM_015088, intron 3 of 20)	80540	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
208561	chr7	72648551	72648750	+	0	NA	intron (NM_001145440, intron 11 of 13)	intron (NM_001145440, intron 11 of 13)	-49253	NR_039793	100616310		NR_039793	ENSG00000266525	MIR4650-1	-	microRNA 4650-1	ncRNA
222562	chr8	140615221	140616130	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	19958	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
150368	chr21	42219701	42221050	+	0	NA	intron (NM_207174, intron 1 of 14)	intron (NM_207174, intron 1 of 14)	477	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
118060	chr19	34287671	34288030	+	0	NA	intron (NM_014686, intron 1 of 13)	MLT1A0|LTR|ERVL-MaLR	33296	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
5152	chr1	24910371	24913900	+	0	NA	intron (NM_001031680, intron 4 of 5)	intron (NM_001031680, intron 4 of 5)	7281	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
147193	chr20	57091951	57092400	+	0	NA	Intergenic	CpG	-121521	NR_110631	102723590		NR_110631		BMP7-AS1	-	BMP7 antisense RNA 1	ncRNA
67018	chr14	67516621	67516880	+	0	NA	intron (NM_001348546, intron 1 of 2)	intron (NM_001348546, intron 1 of 2)	-1265	NM_001348549	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
171882	chr4	779521	779980	+	0	NA	TTS (NR_036511)	TTS (NR_036511)	2098	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
83322	chr16	24733051	24733350	+	0	NA	intron (NM_001330520, intron 2 of 23)	AluSz|SINE|Alu	3549	NM_014494	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
163801	chr3	52406051	52406750	+	0	NA	intron (NM_004656, intron 8 of 16)	intron (NM_004656, intron 8 of 16)	3608	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
100506	chr17	62044651	62044950	+	0	NA	intron (NM_005121, intron 3 of 29)	AluSq2|SINE|Alu	20478	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
122251	chr19	49030151	49030450	+	0	NA	Intergenic	Intergenic	1487	NR_024244	100170228		NR_024244		SNAR-G2	-	small NF90 (ILF3) associated RNA G2	snRNA
108252	chr18	63228371	63228530	+	0	NA	intron (NM_000633, intron 2 of 2)	L2a|LINE|L2	91319	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
112204	chr19	5684471	5685130	+	0	NA	exon (NM_001267868, exon 3 of 9)	exon (NM_001267868, exon 3 of 9)	3773	NM_198707	374875		NM_198533	ENSG00000167733	HSD11B1L	11-DH3|11-beta-HSD3|HSD1L|HSD3|SCDR10|SCDR10B|SDR26C2	hydroxysteroid 11-beta dehydrogenase 1 like	protein-coding
97744	chr17	44392221	44392800	+	0	NA	Intergenic	AluSp|SINE|Alu	-2861	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
93546	chr17	19063201	19065080	+	0	NA	promoter-TSS (NR_003271).2	promoter-TSS (NR_003271).2	-4	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
101953	chr17	74569401	74569800	+	0	NA	Intergenic	Intergenic	-2257	NM_001324076	100130520		NM_001324073	ENSG00000284690	CD300H	CD300Hs	CD300H molecule (gene/pseudogene)	protein-coding
168449	chr3	142947421	142947680	+	0	NA	Intergenic	CpG	16124	NM_198504	344838		NM_198504	ENSG00000188582	PAQR9	BLNC1	progestin and adipoQ receptor family member 9	protein-coding
17520	chr1	156769071	156769230	+	0	NA	intron (NM_005973, intron 1 of 6)	L2a|LINE|L2	1615	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
105618	chr18	786871	787030	+	0	NA	intron (NM_005433, intron 1 of 11)	Tigger17a|DNA|TcMar-Tigger	25292	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
232885	chr9	136837001	136838130	+	0	NA	exon (NM_001173988, exon 9 of 15)	exon (NM_001173988, exon 9 of 15)	-4913	NM_001080482	389813		NM_001080482	ENSG00000232434	AJM1	C9orf172|ajm-1	apical junction component 1 homolog	protein-coding
136308	chr2	174847201	174847600	+	0	NA	5' UTR (NM_001206602, exon 1 of 7)	5' UTR (NM_001206602, exon 1 of 7)	155	NM_001206602	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
234014	chrX	3703171	3704130	+	0	NA	intron (NM_005044, intron 1 of 8)	intron (NM_005044, intron 1 of 8)	9999	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
238954	chrX	155056471	155056750	+	0	NA	3' UTR (NM_023934, exon 5 of 5)	3' UTR (NM_023934, exon 5 of 5)	14526	NM_001018025	4515		NM_014221	ENSG00000214827	MTCP1	P13MTCP1|TCL1C|p8MTCP1	mature T cell proliferation 1	protein-coding
217109	chr8	24944501	24945100	+	0	NA	Intergenic	Intergenic	9067	NR_106900	102465506		NR_106900	ENSG00000283327	MIR6841	hsa-mir-6841	microRNA 6841	ncRNA
78959	chr15	101333651	101334980	+	0	NA	promoter-TSS (NR_132373)	promoter-TSS (NR_132373)	-122	NR_132373	105371027		NR_132373	ENSG00000259764	PCSK6-AS1	-	PCSK6 antisense RNA 1	ncRNA
178812	chr4	153521171	153522990	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	55720	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
128635	chr2	61395801	61396400	+	0	NA	intron (NM_014709, intron 3 of 79)	intron (NM_014709, intron 3 of 79)	21277	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
103065	chr17	77266501	77267030	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-14734	NM_001293695	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
166486	chr3	114297671	114297830	+	0	NA	intron (NM_173799, intron 2 of 3)	intron (NM_173799, intron 2 of 3)	3722	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
121438	chr19	47031151	47031450	+	0	NA	intron (NM_002517, intron 3 of 11)	AluSz|SINE|Alu	-4017	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
137278	chr2	195486721	195487300	+	0	NA	Intergenic	Intergenic	-169948	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
220497	chr8	100558921	100560900	+	0	NA	promoter-TSS (NM_001270379)	promoter-TSS (NM_001270379)	-151	NM_001270377	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
27544	chr10	32333901	32334650	+	0	NA	intron (NR_168508, intron 1 of 12)	MLT1F-int|LTR|ERVL-MaLR	12883	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
107751	chr18	50308951	50309050	+	0	NA	Intergenic	LTR3B_|LTR|ERVK	-20678	NM_001101654	30827		NM_014593	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
174313	chr4	38625621	38625880	+	0	NA	non-coding (NR_026804, exon 5 of 8)	non-coding (NR_026804, exon 5 of 8)	-38449	NM_016531	51274		NM_016531	ENSG00000109787	KLF3	BKLF	KLF transcription factor 3	protein-coding
142379	chr20	3804701	3805250	+	0	NA	non-coding (NR_136335, exon 17 of 17)	non-coding (NR_136335, exon 17 of 17)	-3519	NR_109859	101929125		NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
23746	chr1	232600321	232600880	+	0	NA	intron (NM_001377488, intron 1 of 21)	intron (NM_001377488, intron 1 of 21)	29533	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
170884	chr3	193241071	193241230	+	0	NA	promoter-TSS (NM_020386)	promoter-TSS (NM_020386)	-72	NM_020386	57110		NM_020386	ENSG00000127252	PLAAT1	A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1	phospholipase A and acyltransferase 1	protein-coding
129091	chr2	65118451	65118550	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSx3|SINE|Alu	11606	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
177098	chr4	108075801	108076200	+	0	NA	intron (NM_016269, intron 8 of 11)	intron (NM_016269, intron 8 of 11)	71336	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
230253	chr9	127899001	127900180	+	0	NA	promoter-TSS (NM_013443)	promoter-TSS (NM_013443)	58	NM_001287000	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
93308	chr17	18171021	18171280	+	0	NA	intron (NM_016239, intron 61 of 64)	intron (NM_016239, intron 61 of 64)	-12678	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
205226	chr7	7976601	7977200	+	0	NA	intron (NM_138426, intron 1 of 7)	AluJr4|SINE|Alu	8104	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
106141	chr18	9494671	9495230	+	0	NA	intron (NM_006788, intron 1 of 9)	MER41B|LTR|ERV1	19437	NM_006788	10928		NM_006788	ENSG00000017797	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
149702	chr21	34009251	34009350	+	0	NA	Intergenic	LTR8|LTR|ERV1	32918	NR_134561	101928126		NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
68440	chr14	81485251	81485780	+	0	NA	intron (NM_005065, intron 18 of 20)	AluSx1|SINE|Alu	-35358	NR_109999	100506700		NR_109999		LINC02308	-	long intergenic non-protein coding RNA 2308	ncRNA
27052	chr10	27136601	27137100	+	0	NA	intron (NM_001253866, intron 3 of 17)	AluSq|SINE|Alu	17534	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
9642	chr1	52579321	52579580	+	0	NA	Intergenic	L2c|LINE|L2	-22921	NM_015696	2882		NM_015696	ENSG00000116157	GPX7	CL683|GPX6|GPx-7|GSHPx-7|NPGPx	glutathione peroxidase 7	protein-coding
194564	chr6	33404721	33404980	+	0	NA	intron (NM_002263, intron 6 of 10).3	intron (NM_002263, intron 6 of 10).3	-6164	NR_027692	5252		NM_002636	ENSG00000112511	PHF1	MTF2L2|PCL1|PHF2|TDRD19C|hPHF1	PHD finger protein 1	protein-coding
188079	chr5	150154301	150154900	+	0	NA	intron (NR_149150, intron 1 of 1)	L2c|LINE|L2	1245	NM_002609	5159		NM_002609	ENSG00000113721	PDGFRB	CD140B|IBGC4|IMF1|JTK12|KOGS|PDGFR|PDGFR-1|PDGFR1|PENTT	platelet derived growth factor receptor beta	protein-coding
185981	chr5	133298521	133298780	+	0	NA	intron (NM_015082, intron 6 of 15)	intron (NM_015082, intron 6 of 15)	129056	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
164784	chr3	69212271	69212800	+	0	NA	intron (NM_015123, intron 11 of 22)	intron (NM_015123, intron 11 of 22)	-89940	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
10966	chr1	84225521	84225800	+	0	NA	intron (NM_002731, intron 9 of 9)	L1MA4A|LINE|L1	44028	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
212444	chr7	128403951	128404300	+	0	NA	intron (NM_001304521, intron 1 of 13)	L2c|LINE|L2	1870	NM_001142575	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
165018	chr3	71393201	71393830	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-88744	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
93742	chr17	19866571	19868230	+	0	NA	exon (NM_001142610, exon 1 of 28)	exon (NM_001142610, exon 1 of 28)	536	NM_014683	9706		NM_014683	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
30234	chr10	75008201	75008400	+	0	NA	intron (NM_012330, intron 13 of 17).2	intron (NM_012330, intron 13 of 17).2	-13433	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
75602	chr15	67108401	67108680	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	-17176	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
17379	chr1	156585351	156585650	+	0	NA	intron (NM_001105669, intron 8 of 10)	intron (NM_001105669, intron 8 of 10)	5777	NM_001105669	164118		NM_001105669	ENSG00000187862	TTC24	-	tetratricopeptide repeat domain 24	protein-coding
87324	chr16	70262801	70263000	+	0	NA	intron (NM_001605, intron 11 of 20)	AluY|SINE|Alu	-10960	NM_058219	118460		NM_058219	ENSG00000223496	EXOSC6	EAP4|MTR3|Mtr3p|hMtr3p|p11	exosome component 6	protein-coding
15810	chr1	151292321	151293600	+	0	NA	TTS (NM_001304764)	TTS (NM_001304764)	10661	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
99488	chr17	50188201	50188800	+	0	NA	intron (NM_000088, intron 43 of 50)	intron (NM_000088, intron 43 of 50)	13131	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
222766	chr8	141554821	141555180	+	0	NA	Intergenic	Intergenic	-47770	NR_102363	389690		NM_207414	ENSG00000226807	MROH5	-	maestro heat like repeat family member 5 (gene/pseudogene)	protein-coding
44838	chr11	114076871	114077030	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	13739	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
110425	chr19	1968701	1968900	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	-14251	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
100702	chr17	63836751	63836850	+	0	NA	intron (NM_001330439, intron 4 of 12)	MER112|DNA|hAT-Charlie	1928	NM_001330440	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
53925	chr12	71687771	71687930	+	0	NA	intron (NM_018279, intron 1 of 5)	intron (NM_018279, intron 1 of 5)	1768	NM_018279	55266		NM_018279	ENSG00000139291	TMEM19	-	transmembrane protein 19	protein-coding
161003	chr3	37308271	37309050	+	0	NA	intron (NM_001172713, intron 11 of 22)	AluSc8|SINE|Alu	-64465	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
221109	chr8	118088171	118088780	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	23351	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
154876	chr22	37139771	37140150	+	0	NA	intron (NM_000878, intron 4 of 9)	intron (NM_000878, intron 4 of 9)	9956	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
220511	chr8	100671101	100671300	+	0	NA	Intergenic	LTR28C|LTR|ERV1	-21535	NM_152628	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
206991	chr7	38336671	38337200	+	0	NA	Intergenic	Intergenic	-4642	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
84654	chr16	30736321	30736980	+	0	NA	intron (NM_006662, intron 33 of 33)	intron (NM_006662, intron 33 of 33)	-3992	NM_001256829	100862671		NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
163350	chr3	50434621	50434880	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	68884	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
97056	chr17	42363201	42363400	+	0	NA	intron (NM_001369516, intron 1 of 23)	intron (NM_001369516, intron 1 of 23)	25142	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
178731	chr4	152957521	152958180	+	0	NA	intron (NM_001371116, intron 4 of 11)	intron (NM_001371116, intron 4 of 11)	14867	NM_033393	85462		NM_033393	ENSG00000137460	FHDC1	INF1	FH2 domain containing 1	protein-coding
164683	chr3	67600521	67600780	+	0	NA	intron (NM_001177599, intron 2 of 10)	MLT1J1|LTR|ERVL-MaLR	53962	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
14066	chr1	120795351	120795880	+	0	NA	Intergenic	MIRb|SINE|MIR	-9941	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
30452	chr10	79085071	79085430	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	16284	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
48208	chr12	8086271	8087000	+	0	NA	intron (NR_024260, intron 1 of 6)	intron (NR_024260, intron 1 of 6)	4361	NM_015509	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
180392	chr5	9538221	9538770	+	0	NA	intron (NM_003966, intron 1 of 22)	intron (NM_003966, intron 1 of 22)	7580	NM_003966	9037		NM_003966	ENSG00000112902	SEMA5A	SEMAF|semF	semaphorin 5A	protein-coding
55444	chr12	104571471	104571630	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-20083	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
44131	chr11	96111501	96111700	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-187493	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
79521	chr16	805751	806350	+	0	NA	intron (NM_001013638, intron 1 of 2)	intron (NM_001013638, intron 1 of 2)	607	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
153923	chr22	30323351	30323450	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	3541	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
220836	chr8	102862601	102863500	+	0	NA	intron (NM_148174, intron 1 of 11)	CpG	1113	NM_001301668	51582		NM_015878	ENSG00000155096	AZIN1	AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
115545	chr19	15478471	15478930	+	0	NA	intron (NM_001363546, intron 1 of 3)	AluSx1|SINE|Alu	801	NM_052890	114770		NM_052890	ENSG00000161031	PGLYRP2	HMFT0141|PGLYRPL|PGRP-L|PGRPL|TAGL-like|tagL|tagL-alpha|tagl-beta	peptidoglycan recognition protein 2	protein-coding
86931	chr16	68096401	68096980	+	0	NA	intron (NM_173165, intron 1 of 9)	L2c|LINE|L2	11320	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
6729	chr1	30380171	30380550	+	0	NA	Intergenic	Intergenic	-338412	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
109840	chr19	1202871	1203030	+	0	NA	Intergenic	AluSx|SINE|Alu	-2828	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
63176	chr13	113728051	113728730	+	0	NA	intron (NM_002929, intron 4 of 6)	intron (NM_002929, intron 4 of 6)	22699	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
113187	chr19	8410651	8411480	+	0	NA	Intergenic	AluSz|SINE|Alu	-2238	NM_001005415	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
58999	chr13	20118121	20119930	+	0	NA	Intergenic	Intergenic	16324	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
109375	chr19	647851	647950	+	0	NA	3' UTR (NM_001366018, exon 9 of 9)	3' UTR (NM_001366018, exon 9 of 9)	8005	NM_001300812	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
180143	chr5	1344471	1346050	+	0	NA	promoter-TSS (NM_030782)	promoter-TSS (NM_030782)	-161	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
28211	chr10	44978651	44978950	+	0	NA	promoter-TSS (NM_007021)	promoter-TSS (NM_007021)	9	NM_007021	11067		NM_007021	ENSG00000165507	DEPP1	C10orf10|DEPP|FIG|Fseg	DEPP autophagy regulator 1	protein-coding
79670	chr16	1238921	1239900	+	0	NA	Intergenic	Intergenic	-1295	NM_003294	7177		NM_003294	ENSG00000172236	TPSAB1	TPS1|TPS2|TPSB1|TPSB2|Tryptase-2	tryptase alpha/beta 1	protein-coding
112429	chr19	6277771	6278460	+	0	NA	intron (NM_005934, intron 1 of 11)	intron (NM_005934, intron 1 of 11)	1860	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
134854	chr2	148667571	148667930	+	0	NA	intron (NM_015630, intron 1 of 13)	L1ME1|LINE|L1	22999	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
222798	chr8	142402411	142404900	+	0	NA	promoter-TSS (NM_001291931)	promoter-TSS (NM_001291931)	-473	NM_145003	203062		NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
194105	chr6	31947251	31947930	+	0	NA	intron (NM_001710, intron 4 of 17).3	intron (NM_001710, intron 4 of 17).3	1495	NM_001710	629		NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
123906	chr19	55344971	55345330	+	0	NA	intron (NM_032701, intron 6 of 8)	intron (NM_032701, intron 6 of 8)	5274	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
171707	chr3	197846851	197847250	+	0	NA	intron (NM_001365715, intron 10 of 20)	intron (NM_001365715, intron 10 of 20)	55796	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
32920	chr10	110220351	110220650	+	0	NA	intron (NM_001008541, intron 1 of 4)	intron (NM_001008541, intron 1 of 4)	-5496	NM_005962	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
200354	chr6	134065751	134066150	+	0	NA	Intergenic	MIR3|SINE|MIR	-13326	NM_145176	154091		NM_145176	ENSG00000146411	SLC2A12	GLUT12|GLUT8	solute carrier family 2 member 12	protein-coding
53717	chr12	68615601	68616950	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	5376	NM_001251922	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
132132	chr2	101706471	101707650	+	0	NA	intron (NM_001384572, intron 1 of 29)	HAL1|LINE|L1	8795	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
73187	chr15	41504371	41505180	+	0	NA	exon (NM_002344, exon 17 of 20)	exon (NM_002344, exon 17 of 20)	9052	NM_002344	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
52508	chr12	56043571	56044780	+	0	NA	3' UTR (NM_001029, exon 4 of 4)	3' UTR (NM_001029, exon 4 of 4)	2257	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
115827	chr19	16492921	16493180	+	0	NA	intron (NM_145046, intron 2 of 8)	AluSp|SINE|Alu	3117	NM_145046	125972		NM_145046	ENSG00000269058	CALR3	CMH19|CRT2|CT93	calreticulin 3	protein-coding
107939	chr18	58041651	58042150	+	0	NA	Intergenic	Intergenic	-2326	NM_001144967	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
237937	chrX	132463471	132463650	+	0	NA	intron (NM_001170704, intron 1 of 8)	intron (NM_001170704, intron 1 of 8)	-23870	NM_133486	55796		NM_018388	ENSG00000076770	MBNL3	CHCR|MBLX|MBLX39|MBXL	muscleblind like splicing regulator 3	protein-coding
148145	chr20	63496071	63497050	+	0	NA	intron (NM_001958, intron 2 of 7)	intron (NM_001958, intron 2 of 7)	2523	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
223150	chr8	143521351	143522030	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	-15442	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
136645	chr2	179861151	179861450	+	0	NA	promoter-TSS (NR_031659)	promoter-TSS (NR_031659)	312	NM_001352811	151126		NM_152520	ENSG00000144331	ZNF385B	ZNF533	zinc finger protein 385B	protein-coding
20500	chr1	198655301	198655850	+	0	NA	intron (NM_002838, intron 2 of 32)	MIRb|SINE|MIR	16535	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
121867	chr19	48272701	48273600	+	0	NA	intron (NM_153608, intron 3 of 5)	intron (NM_153608, intron 3 of 5)	1863	NM_001369812	163071		NM_153608	ENSG00000178150	ZNF114	-	zinc finger protein 114	protein-coding
123656	chr19	54804251	54804350	+	0	NA	intron (NM_001080770, intron 2 of 6).30	intron (NM_001080770, intron 2 of 6).30	690	NM_001080770	3805		NM_002255	ENSG00000189013	KIR2DL4	CD158D|G9P|KIR-103AS|KIR-2DL4|KIR103|KIR103AS	killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 4	protein-coding
5997	chr1	26996571	26996980	+	0	NA	intron (NM_001013642, intron 1 of 1)	intron (NM_001013642, intron 1 of 1)	3083	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
161309	chr3	39399951	39400450	+	0	NA	Intergenic	Intergenic	-6520	NM_002295	3921		NM_002295	ENSG00000168028	RPSA	37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40|uS2	ribosomal protein SA	protein-coding
72148	chr15	29063201	29063580	+	0	NA	intron (NM_001353793, intron 3 of 12).2	intron (NM_001353793, intron 3 of 12).2	-7268	NM_001353797	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
140840	chr2	236969451	236969550	+	0	NA	Intergenic	Intergenic	86667	NR_135202	93463		NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA
29067	chr10	67889901	67890180	+	0	NA	intron (NM_012238, intron 3 of 8)	AluJb|SINE|Alu	-1362	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
56843	chr12	120245021	120245280	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	5013	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
140375	chr2	233053771	233054830	+	0	NA	Intergenic	Intergenic	-6042	NM_005541	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
2445	chr1	9626621	9627980	+	0	NA	Intergenic	CpG	-24431	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
96760	chr17	41709271	41709430	+	0	NA	Intergenic	Intergenic	-2981	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
139158	chr2	219171121	219171830	+	0	NA	TTS (NM_015680)	TTS (NM_015680)	-1446	NM_001144890	151295		NM_144712	ENSG00000213901	SLC23A3	E2BP3|SVCT3|Yspl1	solute carrier family 23 member 3	protein-coding
178959	chr4	159202721	159203250	+	0	NA	intron (NM_001351724, intron 3 of 30)	intron (NM_001351724, intron 3 of 30)	-24647	NM_001351726	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
193054	chr6	28635871	28636030	+	0	NA	Intergenic	Intergenic	18525	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
142073	chr20	2387001	2387480	+	0	NA	intron (NM_001254734, intron 1 of 11)	intron (NM_001254734, intron 1 of 11)	6339	NM_198994	343641		NM_198994	ENSG00000166948	TGM6	SCA35|TG6|TGM3L|TGY|dJ734P14.3	transglutaminase 6	protein-coding
38316	chr11	44037371	44037630	+	0	NA	Intergenic	Intergenic	-10481	NM_001363113	390110		NM_001031854	ENSG00000205126	ACCSL	-	1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like	protein-coding
174019	chr4	26583571	26584730	+	0	NA	promoter-TSS (NM_018317)	promoter-TSS (NM_018317)	66	NM_018317	55296		NM_018317	ENSG00000109680	TBC1D19	-	TBC1 domain family member 19	protein-coding
31045	chr10	88908351	88908450	+	0	NA	intron (NM_020799, intron 3 of 10)	MamSINE1|SINE|tRNA-RTE	-24284	NR_125373	100132116		NR_125373	ENSG00000180139	ACTA2-AS1	UC001kfo|ZXF1|uc001kfo.1	ACTA2 antisense RNA 1	ncRNA
3795	chr1	16715251	16715600	+	0	NA	intron (NR_026567, intron 1 of 10)	intron (NR_026567, intron 1 of 10)	4732	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
84333	chr16	30182071	30185100	+	0	NA	promoter-TSS (NM_007074)	promoter-TSS (NM_007074)	-17	NM_007074	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
177066	chr4	108043001	108043200	+	0	NA	Intergenic	Intergenic	38436	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
135046	chr2	156338671	156338980	+	0	NA	non-coding (NR_147695, exon 1 of 1)	non-coding (NR_147695, exon 1 of 1)	3295	NR_147695	440918		NR_147695		FLJ46875	-	uncharacterized LOC440918	ncRNA
87968	chr16	80527351	80527680	+	0	NA	intron (NR_120307, intron 2 of 5)	intron (NR_120307, intron 2 of 5)	-13219	NM_001305017	83657		NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein light chain roadblock-type 2	protein-coding
207032	chr7	38879851	38880390	+	0	NA	intron (NM_080631, intron 2 of 27)	MIRb|SINE|MIR	29071	NM_014396	27072		NM_014396	ENSG00000006715	VPS41	HVPS41|HVSP41|SCAR29|hVps41p	VPS41 subunit of HOPS complex	protein-coding
70754	chr14	103402821	103403330	+	0	NA	intron (NM_002376, intron 1 of 15)	MER65C|LTR|ERV1	17660	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
96795	chr17	41864681	41866700	+	0	NA	promoter-TSS (NM_018143)	promoter-TSS (NM_018143)	-267	NM_018143	55175		NM_018143	ENSG00000178502	KLHL11	-	kelch like family member 11	protein-coding
225895	chr9	39792751	39793450	+	0	NA	Intergenic	Intergenic	17059	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
61597	chr13	73060971	73061330	+	0	NA	intron (NM_001730, intron 1 of 3)	intron (NM_001730, intron 1 of 3)	2145	NM_001730	688		NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	KLF transcription factor 5	protein-coding
72841	chr15	40155071	40155230	+	0	NA	Intergenic	Intergenic	-5919	NM_001211	701		NM_001211	ENSG00000156970	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
188373	chr5	151784371	151785030	+	0	NA	intron (NM_198395, intron 1 of 11)	intron (NM_198395, intron 1 of 11)	-12524	NR_132345	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
178609	chr4	152065551	152065850	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	-35053	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
197803	chr6	87697401	87697930	+	0	NA	intron (NM_018064, intron 1 of 4)	intron (NM_018064, intron 1 of 4)	4568	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
78085	chr15	90229371	90230000	+	0	NA	TTS (NR_102427)	TTS (NR_102427)	4256	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
104555	chr17	81329571	81330100	+	0	NA	intron (NR_165247, intron 1 of 2)	intron (NR_165247, intron 1 of 2)	839	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
150841	chr21	44056371	44056730	+	0	NA	intron (NM_003274, intron 5 of 22)	L1MC4a|LINE|L1	-17774	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
87094	chr16	68520401	68521380	+	0	NA	Intergenic	Intergenic	-18323	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
94696	chr17	30669101	30669580	+	0	NA	Intergenic	Intergenic	-40268	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
45342	chr11	118229201	118229400	+	0	NA	non-coding (NR_104404, exon 3 of 3)	non-coding (NR_104404, exon 3 of 3)	-4289	NM_001286570	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
154849	chr22	37101601	37101800	+	0	NA	intron (NM_153609, intron 2 of 17)	intron (NM_153609, intron 2 of 17)	1956	NM_153609	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
162130	chr3	46944171	46944330	+	0	NA	intron (NM_144716, intron 2 of 7)	MIR3|SINE|MIR	32251	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
122314	chr19	49127421	49128850	+	0	NA	intron (NR_103842, intron 2 of 28)	CpG-14893	8591	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
79409	chr16	676401	676600	+	0	NA	intron (NM_001278721, intron 2 of 6)	intron (NM_001278721, intron 2 of 6)	436	NM_001318733	9028		NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	rhomboid like 1	protein-coding
9770	chr1	53412951	53414200	+	0	NA	Intergenic	Intergenic	26445	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
174160	chr4	36264501	36264700	+	0	NA	intron (NR_122080, intron 2 of 2)	MLT2E|LTR|ERVL	8082	NR_122080	439933		NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
44720	chr11	111763371	111763530	+	0	NA	intron (NM_181700, intron 1 of 13)	L2a|LINE|L2	2939	NM_001177562	5519		NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
164298	chr3	57646801	57647100	+	0	NA	intron (NM_152678, intron 9 of 19)	intron (NM_152678, intron 9 of 19)	46127	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
98427	chr17	46782201	46782430	+	0	NA	intron (NM_030753, intron 1 of 4)	GA-rich|Low_complexity|Low_complexity	36377	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
48186	chr12	8024571	8025080	+	0	NA	Intergenic	AluSc|SINE|Alu	-7891	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
233704	chrX	1244651	1245530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-23724	NM_172247	1438		NM_006140	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMCSFR-alpha|GMR|GMR-alpha|SMDP4|alphaGMR	colony stimulating factor 2 receptor subunit alpha	protein-coding
104632	chr17	81437371	81437930	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	13538	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
47062	chr12	553401	554350	+	0	NA	exon (NM_173593, exon 14 of 20)	exon (NM_173593, exon 14 of 20)	32611	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
150347	chr21	42155571	42155730	+	0	NA	Intergenic	Intergenic	-44039	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
193440	chr6	30485601	30485800	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-3809	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
67634	chr14	73052751	73053050	+	0	NA	Intergenic	AluSz|SINE|Alu	-5634	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
150223	chr21	41121971	41122130	+	0	NA	Intergenic	Intergenic	26014	NR_024100	284835		NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
170011	chr3	180912021	180913500	+	0	NA	promoter-TSS (NM_001363882)	promoter-TSS (NM_001363882)	89	NM_001363882	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
70274	chr14	101729751	101729850	+	0	NA	promoter-TSS (NR_026774)	promoter-TSS (NR_026774)	-637	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
227598	chr9	92672171	92672900	+	0	NA	Intergenic	AluJb|SINE|Alu	-2404	NM_022755	64768		NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
45708	chr11	119082071	119082230	+	0	NA	TTS (NR_165448)	TTS (NR_165448)	-2727	NM_001258209	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
144526	chr20	35709001	35709550	+	0	NA	intron (NM_184234, intron 12 of 16)	intron (NM_184234, intron 12 of 16)	9870	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
168765	chr3	151230501	151231050	+	0	NA	intron (NM_014879, intron 1 of 2)	intron (NM_014879, intron 1 of 2)	18216	NM_001081455	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
24692	chr1	247292071	247292630	+	0	NA	Intergenic	Intergenic	36278	NR_160309	317705		NM_173858	ENSG00000197617	VN1R5	V1RL5	vomeronasal 1 receptor 5 (gene/pseudogene)	protein-coding
158177	chr22	50220821	50221080	+	0	NA	exon (NM_020461, exon 16 of 25)	exon (NM_020461, exon 16 of 25)	19939	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
198585	chr6	107656521	107657100	+	0	NA	intron (NM_018013, intron 6 of 6)	MIR3|SINE|MIR	75340	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
188046	chr5	149834251	149834580	+	0	NA	intron (NM_133263, intron 5 of 11)	MIR|SINE|MIR	62475	NM_001172699	133522		NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
73389	chr15	42576871	42577100	+	0	NA	intron (NM_020759, intron 1 of 32)	intron (NM_020759, intron 1 of 32)	1379	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
233953	chrX	2608301	2610480	+	0	NA	TTS (NR_106737)	TTS (NR_106737)	125	NR_033380	401577		NR_033380	ENSG00000291040	CD99P1	CD99L1|CXYorf12|MIC2R|NCRNA00103	CD99 molecule pseudogene 1	pseudo
115321	chr19	15107371	15108130	+	0	NA	intron (NM_001300910, intron 1 of 7)	CpG	349	NM_001300910	85360		NM_033025	ENSG00000105137	SYDE1	7h3|SYD1	synapse defective Rho GTPase homolog 1	protein-coding
184428	chr5	98936821	98937280	+	0	NA	intron (NR_151718, intron 1 of 3)	MLT1O|LTR|ERVL-MaLR	7916	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
121361	chr19	46842171	46842330	+	0	NA	intron (NM_001301078, intron 2 of 4)	L2b|LINE|L2	8064	NM_001301076	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
18478	chr1	161622571	161622730	+	0	NA	TTS (NM_001271036)	TTS (NM_001271036)	8397	NM_001271036	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
12002	chr1	95084551	95084880	+	0	NA	Intergenic	Intergenic	-7802	NM_001199679	148534		NM_152487	ENSG00000152078	TLCD4	TMEM56	TLC domain containing 4	protein-coding
66205	chr14	61283871	61284330	+	0	NA	Intergenic	Intergenic	-2762	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
142346	chr20	3747871	3748930	+	0	NA	intron (NM_001197327, intron 8 of 12)	intron (NM_001197327, intron 8 of 12)	15715	NM_001197327	116835		NM_052970	ENSG00000132622	HSPA12B	C20orf60	heat shock protein family A (Hsp70) member 12B	protein-coding
830	chr1	1574021	1576130	+	0	NA	promoter-TSS (NM_014188)	promoter-TSS (NM_014188)	-212	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
191515	chr6	11330651	11331150	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	51448	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
135373	chr2	160460071	160460500	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	33522	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
233603	chrX	338151	338450	+	0	NA	intron (NM_013239, intron 12 of 12)	CpG	19155	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
71124	chr14	104966571	104966730	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	3857	NM_001350929	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
15458	chr1	150341451	150341750	+	0	NA	intron (NR_146768, intron 9 of 15)	AluSp|SINE|Alu	20067	NM_004698	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
67353	chr14	69695571	69696350	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	-71182	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
224519	chr9	19124771	19125250	+	0	NA	intron (NR_038064, intron 2 of 6)	L1MB8|LINE|L1	2482	NM_001122	123		NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
227566	chr9	92141251	92142080	+	0	NA	intron (NR_027341, intron 1 of 3)	intron (NR_027341, intron 1 of 3)	198	NR_027341	158314		NR_027341		LINC00475	C9orf44	long intergenic non-protein coding RNA 475	ncRNA
222284	chr8	133452351	133452650	+	0	NA	Intergenic	Intergenic	119387	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
89618	chr16	89309081	89309950	+	0	NA	intron (NM_013275, intron 3 of 12)	intron (NM_013275, intron 3 of 12)	-10937	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
56419	chr12	113307321	113307780	+	0	NA	intron (NR_152403, intron 13 of 15)	intron (NR_152403, intron 13 of 15)	16027	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
1052	chr1	1894321	1895400	+	0	NA	Intergenic	Intergenic	3680	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
225722	chr9	36986221	36986680	+	0	NA	intron (NM_001280553, intron 4 of 7)	CpG	47818	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
131911	chr2	98824071	98824230	+	0	NA	intron (NM_207362, intron 6 of 9)	L2|LINE|L2	-52252	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
211762	chr7	107205751	107206050	+	0	NA	TTS (NM_001161520)	TTS (NM_001161520)	36897	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
97783	chr17	44690971	44691300	+	0	NA	Intergenic	Intergenic	-1338	NM_001099225	124808		NM_144609	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
84215	chr16	29924751	29924850	+	0	NA	intron (NM_178863, intron 1 of 5)	AluSx|SINE|Alu	1426	NM_178863	253980		NM_178863	ENSG00000174943	KCTD13	BACURD1|FKSG86|PDIP1|POLDIP1|hBACURD1	potassium channel tetramerization domain containing 13	protein-coding
168839	chr3	152259451	152259950	+	0	NA	intron (NM_001376839, intron 2 of 10)	intron (NM_001376839, intron 2 of 10)	-9229	NM_001376823	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
127189	chr2	38528021	38528480	+	0	NA	Intergenic	Intergenic	-12510	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
64623	chr14	31020371	31020530	+	0	NA	intron (NM_014574, intron 1 of 15)	AluSx1|SINE|Alu	-4656	NM_001254729	11154		NM_007077	ENSG00000100478	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor related protein complex 4 subunit sigma 1	protein-coding
205077	chr7	6639471	6639930	+	0	NA	intron (NM_001278559, intron 3 of 8)	intron (NM_001278559, intron 3 of 8)	2382	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
135079	chr2	156589621	156589950	+	0	NA	Intergenic	Intergenic	153406	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
21719	chr1	206770671	206771500	+	0	NA	promoter-TSS (NR_168467)	promoter-TSS (NR_168467)	104	NM_001382624	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
25711	chr10	8995451	8995950	+	0	NA	Intergenic	Intergenic	97711	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
83104	chr16	22463151	22463250	+	0	NA	intron (NR_027154, intron 6 of 28)	AluSz|SINE|Alu	-25485	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
119456	chr19	40416621	40417880	+	0	NA	Intergenic	Intergenic	-3872	NM_181882	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
4512	chr1	21777751	21777850	+	0	NA	intron (NM_001350166, intron 1 of 26)	L1M4|LINE|L1	5349	NM_001350164	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
192101	chr6	16703451	16705300	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	55809	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
175299	chr4	67910371	67910530	+	0	NA	3' UTR (NM_182606, exon 10 of 10)	3' UTR (NM_182606, exon 10 of 10)	-26448	NM_004262	9407		NM_004262	ENSG00000153802	TMPRSS11D	ASP|HAT	transmembrane serine protease 11D	protein-coding
138981	chr2	218285401	218286080	+	0	NA	intron (NM_001321433, intron 1 of 12)	intron (NM_001321433, intron 1 of 12)	1109	NM_001321427	64114		NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
17177	chr1	156227501	156228030	+	0	NA	intron (NM_001199654, intron 2 of 4)	AluSx1|SINE|Alu	-14419	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
4446	chr1	21326171	21326630	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	19104	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
155470	chr22	38487921	38488700	+	0	NA	intron (NM_006386, intron 11 of 12)	intron (NM_006386, intron 11 of 12)	18001	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
105274	chr17	82457721	82459450	+	0	NA	promoter-TSS (NM_001083608)	promoter-TSS (NM_001083608)	-79	NM_031968	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
49057	chr12	14402551	14402900	+	0	NA	intron (NM_181352, intron 1 of 14)	AluSx|SINE|Alu	17444	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
222330	chr8	133523171	133523630	+	0	NA	intron (NM_173344, intron 2 of 9)	MIR|SINE|MIR	48487	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
11794	chr1	92538801	92539700	+	0	NA	intron (NM_001377213, intron 20 of 20)	intron (NM_001377213, intron 20 of 20)	-52325	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
120206	chr19	42290721	42291600	+	0	NA	exon (NM_001304815, exon 11 of 21)	exon (NM_001304815, exon 11 of 21)	6691	NM_015125	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
212050	chr7	114967301	114967700	+	0	NA	intron (NM_199072, intron 3 of 4)	MLT1L|LTR|ERVL-MaLR	45346	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
117848	chr19	31491351	31491450	+	0	NA	Intergenic	MIRb|SINE|MIR	-96789	NM_001278577	100507527		NM_001205273	ENSG00000267465	LINC03103	THEG5	long intergenic non-protein coding RNA 3103	ncRNA
128552	chr2	60880651	60883460	+	0	NA	promoter-TSS (NR_033980)	promoter-TSS (NR_033980)	481	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133352	chr2	113977571	113977730	+	0	NA	TTS (NR_034130)	TTS (NR_034130)	-1919	NR_148509	440900		NR_034128	ENSG00000234199	LINC01191	VIN|lnc-ACTR3	long intergenic non-protein coding RNA 1191	ncRNA
102551	chr17	75842001	75842200	+	0	NA	intron (NM_199242, intron 6 of 31)	AluSz6|SINE|Alu	2304	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
202262	chr6	156988371	156988730	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-47877	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
228261	chr9	98033351	98033750	+	0	NA	Intergenic	Intergenic	-23182	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
80832	chr16	3486721	3486980	+	0	NA	3' UTR (NM_001083600, exon 7 of 7)	3' UTR (NM_001083600, exon 7 of 7)	-1381	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
97821	chr17	44878651	44878930	+	0	NA	intron (NM_001258354, intron 9 of 27)	intron (NM_001258354, intron 9 of 27)	20578	NM_001258353	9343		NM_004247	ENSG00000108883	EFTUD2	MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD	elongation factor Tu GTP binding domain containing 2	protein-coding
167219	chr3	128453551	128454100	+	0	NA	Intergenic	Intergenic	-9769	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
172236	chr4	1340171	1340530	+	0	NA	TTS (NM_001297432)	TTS (NM_001297432)	-6858	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
122087	chr19	48738551	48740100	+	0	NA	exon (NM_017805, exon 3 of 12)	exon (NM_017805, exon 3 of 12)	1285	NM_017805	54922		NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
132964	chr2	111470871	111471030	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	24211	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
39630	chr11	61477551	61478350	+	0	NA	Intergenic	Intergenic	-3170	NM_001170753	220004		NM_145017	ENSG00000162148	SAXO4	C11orf66|IIIG9|PPP1R32	stabilizer of axonemal microtubules 4	protein-coding
164266	chr3	57564701	57564900	+	0	NA	3' UTR (NM_177966, exon 3 of 3)	3' UTR (NM_177966, exon 3 of 3)	8526	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
97128	chr17	42538521	42538780	+	0	NA	intron (NM_000263, intron 3 of 5)	intron (NM_000263, intron 3 of 5)	2409	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
235972	chrX	53687571	53687730	+	0	NA	promoter-TSS (NM_031407)	promoter-TSS (NM_031407)	-931	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
3069	chr1	12178901	12179900	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	-12313	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
51282	chr12	51215251	51216000	+	0	NA	intron (NM_001368008, intron 1 of 2)	intron (NM_001368008, intron 1 of 2)	1680	NM_001368008	5463		NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
90885	chr17	2387371	2388230	+	0	NA	intron (NM_020310, intron 5 of 5)	intron (NM_020310, intron 5 of 5)	13260	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
145471	chr20	43749721	43750280	+	0	NA	Intergenic	Intergenic	-22998	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
43739	chr11	86065321	86065980	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	3434	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
203360	chr6	170307821	170308130	+	0	NA	intron (NM_001286381, intron 1 of 8).2	intron (NM_001286381, intron 1 of 8).2	1217	NM_032448	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
224752	chr9	21852601	21853080	+	0	NA	intron (NM_002451, intron 5 of 7)	intron (NM_002451, intron 5 of 7)	50204	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
132250	chr2	102443121	102443540	+	0	NA	intron (NM_003853, intron 8 of 11)	intron (NM_003853, intron 8 of 11)	11041	NR_039930	100616157		NR_039930	ENSG00000264764	MIR4772	mir-4772	microRNA 4772	ncRNA
121617	chr19	47425471	47426030	+	0	NA	Intergenic	AluJo|SINE|Alu	-3517	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
82740	chr16	21398901	21399300	+	0	NA	Intergenic	MIRb|SINE|MIR	26278	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
38298	chr11	43576851	43577280	+	0	NA	Intergenic	Intergenic	-4329	NR_029697	406918		NR_029697	ENSG00000199077	MIR129-2	MIR-129b|MIRN129-2|mir-129-2	microRNA 129-2	ncRNA
114678	chr19	13094801	13095000	+	0	NA	3' UTR (NM_001378405, exon 11 of 11)	3' UTR (NM_001378405, exon 11 of 11)	7958	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
118156	chr19	35019221	35019680	+	0	NA	exon (NM_001320035, exon 12 of 18)	exon (NM_001320035, exon 12 of 18)	-11020	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
223232	chr8	143611721	143612430	+	0	NA	TTS (NM_001317783)	TTS (NM_001317783)	-2500	NR_138144	65263		NM_023078	ENSG00000104524	PYCR3	PYCRL	pyrroline-5-carboxylate reductase 3	protein-coding
220164	chr8	95087851	95088350	+	0	NA	intron (NR_148914, intron 9 of 11)	intron (NR_148914, intron 9 of 11)	-14918	NR_132986	105375650		NR_132986	ENSG00000245080	MIR3150BHG	-	MIR3150B host gene	ncRNA
218650	chr8	57210651	57210950	+	0	NA	Intergenic	MER50|LTR|ERV1	-7476	NR_038235	100507651		NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
196409	chr6	43371571	43371930	+	0	NA	Intergenic	LTR78|LTR|ERV1	-2103	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
71272	chr14	105232601	105232800	+	0	NA	intron (NM_001242789, intron 1 of 12)	intron (NM_001242789, intron 1 of 12)	15185	NM_145685	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
128687	chr2	61524701	61525300	+	0	NA	intron (NM_003400, intron 3 of 24)	intron (NM_003400, intron 3 of 24)	13356	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
4843	chr1	23673271	23673430	+	0	NA	Intergenic	L2a|LINE|L2	-18429	NM_001199802	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
92579	chr17	9233571	9233730	+	0	NA	intron (NM_004822, intron 6 of 6)	intron (NM_004822, intron 6 of 6)	-54532	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
43568	chr11	83053971	83054430	+	0	NA	intron (NM_014488, intron 1 of 5)	L2c|LINE|L2	-12602	NR_033347	100379250		NR_033347	ENSG00000207221	SNORA70E	U70E	small nucleolar RNA, H/ACA box 70E	snoRNA
20229	chr1	193181801	193182350	+	0	NA	intron (NM_003783, intron 1 of 1)	intron (NM_003783, intron 1 of 1)	4538	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
218900	chr8	60684321	60685180	+	0	NA	intron (NM_017780, intron 1 of 37)	intron (NM_017780, intron 1 of 37)	6010	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
200182	chr6	130778901	130779100	+	0	NA	Intergenic	Intergenic	-48406	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
217162	chr8	26290401	26292490	+	0	NA	promoter-TSS (NM_002717)	promoter-TSS (NM_002717)	-63	NM_002717	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
68958	chr14	91410851	91411880	+	0	NA	intron (NM_001080414, intron 2 of 29)	MIR3|SINE|MIR	6455	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
166895	chr3	124651001	124651200	+	0	NA	intron (NM_001322999, intron 4 of 14)	intron (NM_001322999, intron 4 of 14)	66441	NM_001322997	8997		NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|KALNC2|TRAD	kalirin RhoGEF kinase	protein-coding
112967	chr19	7852901	7853880	+	0	NA	intron (NM_145245, intron 10 of 18)	intron (NM_145245, intron 10 of 18)	21000	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
128719	chr2	61765771	61765930	+	0	NA	Intergenic	AluSx3|SINE|Alu	88210	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
25878	chr10	11257701	11257980	+	0	NA	exon (NM_001326324, exon 6 of 15)	exon (NM_001326324, exon 6 of 15)	86834	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
194111	chr6	31953101	31953300	+	0	NA	intron (NM_002904, intron 10 of 10)	intron (NM_002904, intron 10 of 10)	3740	NR_031601	100302242		NR_031601	ENSG00000284446	MIR1236	MIRN1236|hsa-mir-1236	microRNA 1236	ncRNA
26965	chr10	26682901	26683700	+	0	NA	Intergenic	L1PA16|LINE|L1	-14124	NM_001321979	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
70122	chr14	100252401	100252800	+	0	NA	intron (NM_003403, intron 1 of 4)	intron (NM_003403, intron 1 of 4)	13456	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
222509	chr8	140535171	140535530	+	0	NA	intron (NM_001164623, intron 16 of 17)	intron (NM_001164623, intron 16 of 17)	23354	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
17717	chr1	158924501	158925550	+	0	NA	Intergenic	Intergenic	-6527	NM_152501	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
83605	chr16	28189411	28190550	+	0	NA	intron (NM_015171, intron 1 of 23)	intron (NM_015171, intron 1 of 23)	21985	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
21179	chr1	203794251	203794550	+	0	NA	Intergenic	Intergenic	-1223	NM_001376342	9877		NM_014827	ENSG00000058673	ZC3H11A	ZC3HDC11A	zinc finger CCCH-type containing 11A	protein-coding
25171	chr10	5410701	5410930	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-1742	NM_001047160	10276		NM_005863	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
121789	chr19	47813451	47814250	+	0	NA	Intergenic	Intergenic	-8087	NM_000554	1406		NM_000554	ENSG00000105392	CRX	CORD2|CRD|LCA7|OTX3	cone-rod homeobox	protein-coding
105341	chr17	82617001	82617700	+	0	NA	exon (NM_019613, exon 8 of 10)	exon (NM_019613, exon 8 of 10)	31094	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
215279	chr7	157020751	157022000	+	0	NA	Intergenic	CpG	10518	NR_038835	645249		NR_038835	ENSG00000243479	MNX1-AS1	CCAT5|MAYA	MNX1 antisense RNA 1 (head to head)	ncRNA
58493	chr12	132160151	132160330	+	0	NA	Intergenic	Intergenic	15783	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
190060	chr5	177596671	177597030	+	0	NA	3' UTR (NM_017510, exon 5 of 5)	3' UTR (NM_017510, exon 5 of 5)	-3282	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
26990	chr10	26783521	26783780	+	0	NA	intron (NR_145410, intron 2 of 11)	HERVL40-int|LTR|ERVL	77308	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
77019	chr15	78619671	78619830	+	0	NA	intron (NR_046313, intron 1 of 7)	intron (NR_046313, intron 1 of 7)	1246	NM_000743	1136		NM_000743	ENSG00000080644	CHRNA3	BAIPRCK|LNCR2|NACHRA3|PAOD2	cholinergic receptor nicotinic alpha 3 subunit	protein-coding
109918	chr19	1295651	1296450	+	0	NA	intron (NM_001405, intron 2 of 3)	CpG-13020	10177	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
10981	chr1	84436101	84436550	+	0	NA	Intergenic	Intergenic	28055	NM_058248	58511		NM_021233	ENSG00000137976	DNASE2B	DLAD	deoxyribonuclease 2 beta	protein-coding
188824	chr5	159092401	159092600	+	0	NA	intron (NM_001364155, intron 4 of 14)	intron (NM_001364155, intron 4 of 14)	5456	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
53379	chr12	64682551	64682900	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-60120	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
209070	chr7	74785901	74786180	+	0	NA	intron (NM_000265, intron 8 of 10)	AluJr|SINE|Alu	12078	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
119571	chr19	40664871	40665680	+	0	NA	TTS (NM_001289979)	TTS (NM_001289979)	24889	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
99233	chr17	49677241	49679050	+	0	NA	promoter-TSS (NM_001007230)	promoter-TSS (NM_001007230)	18	NM_001007230	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
139523	chr2	224571301	224571500	+	0	NA	intron (NM_003590, intron 1 of 15)	intron (NM_003590, intron 1 of 15)	-1445	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
237985	chrX	134396201	134396430	+	0	NA	intron (NM_001015877, intron 5 of 10)	intron (NM_001015877, intron 5 of 10)	23003	NM_032335	84295		NM_032335	ENSG00000156531	PHF6	BFLS|BORJ|CENP-31	PHD finger protein 6	protein-coding
136720	chr2	181174321	181174580	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	50613	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
191386	chr6	7615201	7616050	+	0	NA	Intergenic	Intergenic	25427	NM_152551	154007		NM_152551	ENSG00000168566	SNRNP48	C6orf151|dJ336K20B.1|dJ512B11.2	small nuclear ribonucleoprotein U11/U12 subunit 48	protein-coding
213707	chr7	140227751	140227850	+	0	NA	Intergenic	AluSx1|SINE|Alu	50539	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
182646	chr5	67163451	67163930	+	0	NA	exon (NM_001290226, exon 27 of 27)	exon (NM_001290226, exon 27 of 27)	33109	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
66890	chr14	65170621	65171280	+	0	NA	Intergenic	Intergenic	51397	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
28151	chr10	43457151	43458300	+	0	NA	intron (NM_001355444, intron 1 of 3)	intron (NM_001355444, intron 1 of 3)	20614	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
17925	chr1	160286371	160286800	+	0	NA	Intergenic	L2b|LINE|L2	-1434	NR_036492	5824		NM_002857	ENSG00000162735	PEX19	D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1	peroxisomal biogenesis factor 19	protein-coding
95137	chr17	35049901	35050400	+	0	NA	intron (NR_037713, intron 1 of 6)	AluJb|SINE|Alu	13557	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
131532	chr2	96602301	96603330	+	0	NA	non-coding (NR_047656, exon 17 of 20)	non-coding (NR_047656, exon 17 of 20)	35176	NR_047658	55683		NM_017991	ENSG00000114982	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
113135	chr19	8326001	8326200	+	0	NA	intron (NM_198471, intron 7 of 10)	AluSg|SINE|Alu	4604	NM_001031	6234		NM_001031	ENSG00000233927	RPS28	DBA15|S28|eS28	ribosomal protein S28	protein-coding
220505	chr8	100625671	100625830	+	0	NA	intron (NM_152628, intron 4 of 13)	intron (NM_152628, intron 4 of 13)	-7345	NM_001363720	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
28858	chr10	62636721	62638180	+	0	NA	Intergenic	Intergenic	-167270	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
198316	chr6	100790071	100790430	+	0	NA	intron (NM_001284271, intron 8 of 12)	MIRc|SINE|MIR	91079	NM_006828	10973		NM_006828	ENSG00000112249	ASCC3	ASC1p200|HELIC1|MRT81|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
81017	chr16	4251671	4252030	+	0	NA	non-coding (NR_039999, exon 2 of 3)	non-coding (NR_039999, exon 2 of 3)	1939	NR_039999	100507501		NR_039999		LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA
71625	chr14	106714471	106715180	+	0	NA	Intergenic	Intergenic	136174	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
66865	chr14	65044451	65044750	+	0	NA	promoter-TSS (NR_039855)	promoter-TSS (NR_039855)	-88	NR_039855	100616490		NR_039855	ENSG00000266531	MIR4706	mir-4706	microRNA 4706	ncRNA
225486	chr9	35637101	35637300	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-9070	NR_135130	101926948		NR_135130		LOC101926948	-	uncharacterized LOC101926948	ncRNA
65978	chr14	56581221	56581600	+	0	NA	intron (NM_017799, intron 1 of 15)	intron (NM_017799, intron 1 of 15)	1612	NM_017799	54916		NM_017799	ENSG00000070269	TMEM260	C14orf101|SHDRA	transmembrane protein 260	protein-coding
14081	chr1	120853201	120853630	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-2430	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
160364	chr3	27860821	27861730	+	0	NA	TTS (NR_146630)	TTS (NR_146630)	-27139	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
81834	chr16	11576751	11577650	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	9173	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
140918	chr2	237710801	237711200	+	0	NA	intron (NM_001137551, intron 2 of 11)	AluJo|SINE|Alu	18795	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
10792	chr1	77673271	77673630	+	0	NA	intron (NR_164775, intron 1 of 14)	AluSx1|SINE|Alu	9208	NM_001376155	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
107828	chr18	54219521	54219980	+	0	NA	intron (NM_003927, intron 1 of 6)	intron (NM_003927, intron 1 of 6)	2662	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
175434	chr4	71107221	71108480	+	0	NA	Intergenic	AluJo|SINE|Alu	-78915	NM_001134742	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
235876	chrX	51641551	51641730	+	0	NA	Intergenic	Intergenic	-22728	NM_001355276	347549		NM_001355276	ENSG00000224109	CENPVL3	CENPVP3	centromere protein V like 3	protein-coding
157679	chr22	46290401	46291680	+	0	NA	intron (NM_017931, intron 13 of 13)	intron (NM_017931, intron 13 of 13)	5620	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
145556	chr20	44217301	44218100	+	0	NA	intron (NR_038337, intron 2 of 2)	L1ME3A|LINE|L1	6614	NR_038337	100505783		NR_038337	ENSG00000223891	OSER1-DT	OSER1-AS1	OSER1 divergent transcript	ncRNA
7034	chr1	31929801	31930830	+	0	NA	intron (NM_080391, intron 1 of 5)	AluYe5|SINE|Alu	7503	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
124031	chr19	55489821	55490250	+	0	NA	intron (NM_001144950, intron 4 of 13)	intron (NM_001144950, intron 4 of 13)	1599	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
182990	chr5	72193471	72193830	+	0	NA	intron (NM_005909, intron 4 of 6)	MamRep38|DNA|hAT	13863	NM_001324255	4131		NM_005909	ENSG00000131711	MAP1B	DFNA83|FUTSCH|MAP5|PPP1R102|PVNH9	microtubule associated protein 1B	protein-coding
11243	chr1	88974651	88975100	+	0	NA	intron (NM_001349447, intron 2 of 13)	LTR12|LTR|ERV1	17754	NM_001162536	494115		NM_019610	ENSG00000213516	RBMXL1	RBM1	RBMX like 1	protein-coding
5204	chr1	24966611	24967480	+	0	NA	Intergenic	Intergenic	-2035	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
50284	chr12	46366951	46367050	+	0	NA	intron (NM_001307936, intron 5 of 14)	intron (NM_001307936, intron 5 of 14)	5773	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
159477	chr3	14146771	14147150	+	0	NA	intron (NR_148951, intron 13 of 13)	intron (NR_148951, intron 13 of 13)	21908	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
126970	chr2	36247671	36247830	+	0	NA	Intergenic	L1MC5|LINE|L1	107820	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
67135	chr14	68666751	68666850	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	-38013	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
102476	chr17	75733121	75733380	+	0	NA	intron (NM_001005619, intron 11 of 38)	AluY|SINE|Alu	8554	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
127265	chr2	38708221	38708850	+	0	NA	intron (NM_138801, intron 4 of 6)	AluYm1|SINE|Alu	42421	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
226018	chr9	41655221	41655880	+	0	NA	Intergenic	Intergenic	7876	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
124304	chr19	57915801	57917550	+	0	NA	promoter-TSS (NM_001297734)	promoter-TSS (NM_001297734)	-83	NM_152475	147687		NM_152475	ENSG00000173480	ZNF417	-	zinc finger protein 417	protein-coding
185458	chr5	131269851	131270830	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluY|SINE|Alu	6287	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
61749	chr13	74241471	74242030	+	0	NA	intron (NR_144451, intron 1 of 1)	L1PA3|LINE|L1	10306	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
65741	chr14	53152801	53153930	+	0	NA	promoter-TSS (NR_110062)	promoter-TSS (NR_110062)	11	NR_110062	101927620		NR_110062	ENSG00000258731	DDHD1-DT	-	DDHD1 divergent transcript	ncRNA
41658	chr11	66557821	66558080	+	0	NA	intron (NR_047663, intron 10 of 20)	intron (NR_047663, intron 10 of 20)	10656	NM_003793	8722		NM_003793	ENSG00000174080	CTSF	CATSF|CLN13	cathepsin F	protein-coding
114351	chr19	12291951	12292350	+	0	NA	intron (NM_001353550, intron 1 of 4)	AluJb|SINE|Alu	2462	NM_001353551	51710		NM_016264	ENSG00000197857	ZNF44	GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58	zinc finger protein 44	protein-coding
215246	chr7	156924951	156925500	+	0	NA	Intergenic	Intergenic	-24487	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
116121	chr19	17321451	17322300	+	0	NA	3' UTR (NM_024050, exon 5 of 5)	3' UTR (NM_024050, exon 5 of 5)	12312	NM_024050	79016		NM_024050	ENSG00000130311	DDA1	C19orf58|PCIA1	DET1 and DDB1 associated 1	protein-coding
120039	chr19	41966971	41967330	+	0	NA	intron (NM_001256213, intron 22 of 22)	intron (NM_001256213, intron 22 of 22)	-7829	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
149445	chr21	31557401	31558360	+	0	NA	intron (NM_001353688, intron 1 of 29)	CpG	1207	NM_001353689	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
40683	chr11	64767321	64768280	+	0	NA	exon (NM_001346363, exon 10 of 13)	exon (NM_001346363, exon 10 of 13)	-7085	NM_001164716	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
217934	chr8	38100971	38101130	+	0	NA	Intergenic	AluSc8|SINE|Alu	-4443	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
135824	chr2	170425171	170425330	+	0	NA	intron (NR_045682, intron 22 of 35)	intron (NR_045682, intron 22 of 35)	-74307	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
51596	chr12	52708021	52708280	+	0	NA	Intergenic	Intergenic	-4626	NM_175078	374454		NM_175078	ENSG00000189182	KRT77	K1B|KRT1B	keratin 77	protein-coding
76928	chr15	78059421	78059930	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	17977	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
203113	chr6	166556971	166557150	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	-12370	NM_001318938	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
224880	chr9	31756771	31756930	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-375360	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
1487	chr1	2752371	2752530	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	48418	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
110359	chr19	1896701	1898560	+	0	NA	Intergenic	Intergenic	-7769	NM_138422	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
52192	chr12	54353601	54353830	+	0	NA	promoter-TSS (NR_120486)	promoter-TSS (NR_120486)	24	NR_120486	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
161530	chr3	42610171	42610330	+	0	NA	intron (NM_001349126, intron 2 of 18)	AluSp|SINE|Alu	-9172	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
148673	chr21	6136851	6136950	+	0	NA	Intergenic	Intergenic	25769	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
136173	chr2	174450271	174450700	+	0	NA	intron (NM_001267050, intron 12 of 16)	L1PA16|LINE|L1	36544	NM_001267050	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
230748	chr9	128885851	128886350	+	0	NA	5' UTR (NM_001127244, exon 2 of 4)	5' UTR (NM_001127244, exon 2 of 4)	-3577	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
208755	chr7	73533971	73534130	+	0	NA	Intergenic	AluJb|SINE|Alu	-11757	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
54311	chr12	89480621	89480700	+	0	NA	intron (NM_172240, intron 4 of 11)	AluYe5|SINE|Alu	44136	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
46437	chr11	128045051	128045380	+	0	NA	Intergenic	LTR16B|LTR|ERVL	-163551	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
180675	chr5	18763271	18763630	+	0	NA	Intergenic	Intergenic	956176	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
58075	chr12	124554651	124554950	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	12812	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
199088	chr6	111663751	111664150	+	0	NA	intron (NM_001370529, intron 11 of 11)	MER46C|DNA|TcMar-Tigger	-57676	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
114857	chr19	13855451	13855750	+	0	NA	Intergenic	L1MB8|LINE|L1	-6436	NR_146095	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
227631	chr9	92877451	92878430	+	0	NA	promoter-TSS (NM_001261460)	promoter-TSS (NM_001261460)	28	NM_001354536	83744		NM_031486	ENSG00000127081	ZNF484	BA526D8.4	zinc finger protein 484	protein-coding
202424	chr6	157936421	157936680	+	0	NA	intron (NM_016224, intron 14 of 17)	intron (NM_016224, intron 14 of 17)	-45313	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
166722	chr3	121547651	121547750	+	0	NA	Intergenic	AluSz|SINE|Alu	-1712	NM_199420	10721		NM_006596	ENSG00000051341	POLQ	PRO0327	DNA polymerase theta	protein-coding
19341	chr1	173832671	173832830	+	0	NA	intron (NM_018122, intron 5 of 16)	AluSx4|SINE|Alu	8077	NM_001365213	55157		NM_018122	ENSG00000117593	DARS2	ASPRS|LBSL|MT-ASPRS|mtAspRS	aspartyl-tRNA synthetase 2, mitochondrial	protein-coding
88363	chr16	84585021	84585280	+	0	NA	intron (NM_021149, intron 3 of 3)	MIR3|SINE|MIR	32928	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
133184	chr2	112938601	112939230	+	0	NA	Intergenic	Intergenic	23722	NM_173205	27178		NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-23|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
35798	chr11	2197251	2198200	+	0	NA	Intergenic	Intergenic	24662	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
23558	chr1	229339471	229340030	+	0	NA	intron (NM_145257, intron 2 of 3)	HAL1|LINE|L1	3297	NM_145257	126731		NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
172009	chr4	963871	964230	+	0	NA	intron (NM_001347, intron 15 of 22)	intron (NM_001347, intron 15 of 22)	9519	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
32656	chr10	103800421	103801150	+	0	NA	intron (NM_014631, intron 2 of 13)	intron (NM_014631, intron 2 of 13)	54006	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
148774	chr21	8204741	8205500	+	0	NA	promoter-TSS (NR_106782)	promoter-TSS (NR_106782)	-195	NR_128716	103504739		NR_128716	ENSG00000277379	MIR6724-3	hsa-mir-6724-3	microRNA 6724-3	ncRNA
59680	chr13	29080851	29081550	+	0	NA	intron (NM_001366651, intron 4 of 14)	LTR52|LTR|ERVL	260861	NM_001366651	23281		NM_015233	ENSG00000132938	MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated scaffold protein 2	protein-coding
264	chr1	923271	924140	+	0	NA	promoter-TSS (NM_001385640)	promoter-TSS (NM_001385640)	-218	NM_001385640	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
100445	chr17	61391251	61391750	+	0	NA	intron (NM_001353146, intron 25 of 25)	intron (NM_001353146, intron 25 of 25)	8106	NR_125749	103689912		NR_125749	ENSG00000267280	TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
154972	chr22	37281771	37282680	+	0	NA	promoter-TSS (NM_013385)	promoter-TSS (NM_013385)	-283	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
67514	chr14	70978271	70978430	+	0	NA	exon (NM_001308160, exon 6 of 34)	exon (NM_001308160, exon 6 of 34)	70891	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
72911	chr15	40356051	40356580	+	0	NA	3' UTR (NM_001145643, exon 3 of 3)	3' UTR (NM_001145643, exon 3 of 3)	-1904	NM_033510	85455		NM_033510	ENSG00000140323	DISP2	C15orf36|DISPB|HsT16908|LINC00594	dispatched RND transporter family member 2	protein-coding
131905	chr2	98771501	98773180	+	0	NA	promoter-TSS (NR_126337)	promoter-TSS (NR_126337)	-442	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
63716	chr14	21201521	21202250	+	0	NA	non-coding (NR_038971, exon 2 of 2)	non-coding (NR_038971, exon 2 of 2)	3618	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
95339	chr17	35762921	35763400	+	0	NA	intron (NM_145272, intron 1 of 2)	FLAM_C|SINE|Alu	2273	NM_145272	146853		NM_145272	ENSG00000270806	C17orf50	-	chromosome 17 open reading frame 50	protein-coding
46955	chr11	134489121	134489780	+	0	NA	intron (NR_033852, intron 5 of 5)	intron (NR_033852, intron 5 of 5)	52968	NR_033852	283177		NR_033852	ENSG00000255545	B3GAT1-DT	-	B3GAT1 divergent transcript	ncRNA
91331	chr17	4412951	4413730	+	0	NA	Intergenic	Intergenic	-20600	NM_001320449	201305		NM_182538	ENSG00000182557	SPNS3	SLC62A3|SLC63A3	SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)	protein-coding
220932	chr8	108277601	108277800	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-28983	NM_001568	3646		NM_001568	ENSG00000104408	EIF3E	EIF3-P48|EIF3S6|INT6|eIF3-p46	eukaryotic translation initiation factor 3 subunit E	protein-coding
31232	chr10	91807301	91807600	+	0	NA	intron (NM_025235, intron 1 of 26)	intron (NM_025235, intron 1 of 26)	9024	NM_025235	80351		NM_025235	ENSG00000107854	TNKS2	ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6	tankyrase 2	protein-coding
146032	chr20	47316971	47318000	+	0	NA	intron (NM_001281781, intron 2 of 20)	intron (NM_001281781, intron 2 of 20)	-1017	NR_024594	100131496		NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
105525	chr17	83117501	83117700	+	0	NA	Intergenic	Intergenic	36454	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
517	chr1	1211151	1211730	+	0	NA	TTS (NM_003327)	TTS (NM_003327)	2713	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
31454	chr10	96073851	96073950	+	0	NA	intron (NR_134322, intron 2 of 3)	MLT1L|LTR|ERVL-MaLR	-9501	NR_036113	100422892		NR_036113	ENSG00000266407	MIR3157	mir-3157	microRNA 3157	ncRNA
7998	chr1	37994751	37995230	+	0	NA	Intergenic	Intergenic	-4968	NM_006802	10946		NM_006802	ENSG00000183431	SF3A3	PRP9|PRPF9|SAP61|SF3a60	splicing factor 3a subunit 3	protein-coding
138458	chr2	206274151	206275800	+	0	NA	promoter-TSS (NM_001285549).2	promoter-TSS (NM_001285549).2	-35	NM_001285549	57683		NM_020923	ENSG00000204186	ZDBF2	Slx9	zinc finger DBF-type containing 2	protein-coding
131655	chr2	97654501	97654980	+	0	NA	Intergenic	Intergenic	8678	NM_001862	1329		NM_001862	ENSG00000135940	COX5B	COXVB	cytochrome c oxidase subunit 5B	protein-coding
198537	chr6	106547021	106547580	+	0	NA	intron (NM_001371242, intron 13 of 21)	L2c|LINE|L2	35445	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
36140	chr11	3128171	3128330	+	0	NA	intron (NM_145638, intron 2 of 20)	intron (NM_145638, intron 2 of 20)	37060	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
192115	chr6	16733371	16734350	+	0	NA	intron (NM_000332, intron 3 of 8)	AluSp|SINE|Alu	26324	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
177107	chr4	108085671	108086230	+	0	NA	intron (NM_016269, intron 4 of 11)	intron (NM_016269, intron 4 of 11)	80847	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
56913	chr12	120390221	120390480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21186	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
234470	chrX	17786771	17787530	+	0	NA	Intergenic	L1PA3|LINE|L1	49657	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
53177	chr12	59578301	59578730	+	0	NA	Intergenic	L2b|LINE|L2	-17514	NM_001270623	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
28410	chr10	47745801	47746000	+	0	NA	3' UTR (NM_001370186, exon 6 of 6)	3' UTR (NM_001370186, exon 6 of 6)	2201	NR_134489	102724593		NR_134489		LOC102724593	-	uncharacterized LOC102724593	ncRNA
204256	chr7	2623551	2623850	+	0	NA	Intergenic	Intergenic	-8286	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
181021	chr5	35863071	35863730	+	0	NA	intron (NM_002185, intron 2 of 7)	intron (NM_002185, intron 2 of 7)	6509	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
21377	chr1	205203471	205203630	+	0	NA	intron (NM_015375, intron 1 of 12)	(GGGGA)n|Simple_repeat|Simple_repeat	8152	NM_199462	25778		NM_015375	ENSG00000133059	DSTYK	CAKUT1|DustyPK|HDCMD38P|RHDNS1|RIP5|RIPK5|SPG23	dual serine/threonine and tyrosine protein kinase	protein-coding
232447	chr9	136120451	136120550	+	0	NA	TTS (NR_165241)	TTS (NR_165241)	1480	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
102449	chr17	75694471	75695030	+	0	NA	intron (NR_126036, intron 4 of 9)	intron (NR_126036, intron 4 of 9)	-26709	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
143218	chr20	24966421	24966680	+	0	NA	intron (NM_020531, intron 8 of 8)	L1MC4|LINE|L1	17281	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
4060	chr1	19060521	19060780	+	0	NA	Intergenic	Intergenic	-103974	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
39510	chr11	61065171	61065330	+	0	NA	Intergenic	Intergenic	-28713	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
60780	chr13	45296151	45296800	+	0	NA	Intergenic	L1ME3G|LINE|L1	39972	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
90350	chr17	1199301	1199730	+	0	NA	intron (NM_001322841, intron 1 of 22)	AluSx1|SINE|Alu	-12243	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
48161	chr12	7935271	7935430	+	0	NA	intron (NM_006931, intron 1 of 9)	AluSp|SINE|Alu	837	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
140692	chr2	234278651	234279550	+	0	NA	Intergenic	Intergenic	175495	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
119820	chr19	41352401	41353100	+	0	NA	exon (NM_000660, exon 1 of 7)	exon (NM_000660, exon 1 of 7)	1172	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
203736	chr7	1146951	1147480	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-8958	NM_001134395	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
18036	chr1	160605321	160605650	+	0	NA	Intergenic	L1PBa|LINE|L1	-25969	NM_001184882	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
173762	chr4	16892151	16892450	+	0	NA	intron (NR_130734, intron 2 of 6)	L2c|LINE|L2	6345	NM_001304434	9079		NM_001290	ENSG00000169744	LDB2	CLIM1|LDB-2|LDB1	LIM domain binding 2	protein-coding
105847	chr18	3010771	3010930	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	1097	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
235849	chrX	50024951	50025300	+	0	NA	intron (NM_001127899, intron 3 of 14)	L1HS|LINE|L1	10527	NR_030226	574504		NR_030226	ENSG00000272080	MIR502	MIRN502|hsa-mir-502|mir-502	microRNA 502	ncRNA
176518	chr4	94995901	94996300	+	0	NA	promoter-TSS (NM_001256792)	promoter-TSS (NM_001256792)	-132	NM_001256792	658		NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMD3|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
84155	chr16	29753501	29753700	+	0	NA	Intergenic	AluJr4|SINE|Alu	-7610	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
157646	chr22	46121571	46121800	+	0	NA	Intergenic	Intergenic	7999	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
227709	chr9	93033851	93034880	+	0	NA	intron (NM_001286993, intron 16 of 17)	intron (NM_001286993, intron 16 of 17)	-19421	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
162252	chr3	47285071	47285430	+	0	NA	intron (NM_025010, intron 1 of 9)	intron (NM_025010, intron 1 of 9)	2306	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
190119	chr5	177979621	177979880	+	0	NA	Intergenic	Intergenic	16492	NM_006261	5626		NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
76364	chr15	74595471	74595630	+	0	NA	intron (NM_006465, intron 8 of 8)	intron (NM_006465, intron 8 of 8)	-12822	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
48868	chr12	12443621	12444230	+	0	NA	intron (NM_058169, intron 3 of 3)	intron (NM_058169, intron 3 of 3)	86847	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
123802	chr19	55159751	55159930	+	0	NA	intron (NM_178837, intron 10 of 11)	MSR1|Satellite|Satellite	-2108	NM_000363	7137		NM_000363	ENSG00000129991	TNNI3	CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI	troponin I3, cardiac type	protein-coding
191501	chr6	11235471	11235630	+	0	NA	intron (NM_001142393, intron 2 of 7)	L2a|LINE|L2	-2868	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
34247	chr10	130300601	130301900	+	0	NA	Intergenic	Intergenic	164841	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
55055	chr12	96435371	96435900	+	0	NA	Intergenic	Intergenic	-35196	NM_001170464	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
110053	chr19	1478501	1479930	+	0	NA	promoter-TSS (NM_152482)	promoter-TSS (NM_152482)	0	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
68241	chr14	76965421	76965680	+	0	NA	intron (NR_133913, intron 2 of 2)	intron (NR_133913, intron 2 of 2)	5912	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
122035	chr19	48632371	48632530	+	0	NA	intron (NM_001352, intron 3 of 3)	AluSx1|SINE|Alu	4929	NM_001352	1628		NM_001352	ENSG00000105516	DBP	DABP|taxREB302	D-box binding PAR bZIP transcription factor	protein-coding
112355	chr19	5958451	5959250	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	19290	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
157990	chr22	49851171	49852000	+	0	NA	Intergenic	Intergenic	-2259	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
117910	chr19	32819571	32820130	+	0	NA	intron (NM_001366102, intron 27 of 32)	intron (NM_001366102, intron 27 of 32)	49917	NM_001243036	11136		NM_014270	ENSG00000021488	SLC7A9	BAT1|CSNU3	solute carrier family 7 member 9	protein-coding
120333	chr19	43540071	43540230	+	0	NA	Intergenic	L1PA11|LINE|L1	6962	NM_174945	284346		NM_174945	ENSG00000176472	ZNF575	-	zinc finger protein 575	protein-coding
169238	chr3	157144421	157144830	+	0	NA	3' UTR (NM_001308185, exon 11 of 11)	3' UTR (NM_001308185, exon 11 of 11)	15522	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
101151	chr17	65054301	65054750	+	0	NA	intron (NM_006572, intron 1 of 3)	AluJo|SINE|Alu	1249	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
16882	chr1	155849171	155849530	+	0	NA	intron (NM_001282861, intron 2 of 20)	AluY|SINE|Alu	7864	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
217078	chr8	23706371	23707280	+	0	NA	promoter-TSS (NM_001136271)	promoter-TSS (NM_001136271)	-69	NM_001136271	137814		NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
168928	chr3	152354121	152354380	+	0	NA	intron (NM_001376837, intron 2 of 9)	AluJb|SINE|Alu	-13260	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
109692	chr19	1046771	1047850	+	0	NA	exon (NM_019112, exon 15 of 47)	exon (NM_019112, exon 15 of 47)	7203	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
89769	chr16	89464071	89464800	+	0	NA	intron (NM_001256182, intron 1 of 13)	AluSx3|SINE|Alu	26126	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
172303	chr4	1582071	1582230	+	0	NA	Intergenic	Intergenic	101841	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
182679	chr5	67360951	67361250	+	0	NA	Intergenic	Intergenic	-164301	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
237492	chrX	119885651	119886550	+	0	NA	Intergenic	MER51A|LTR|ERV1	-9793	NM_178813	158798		NM_178813	ENSG00000186471	AKAP14	AKAP28|PRKA14	A-kinase anchoring protein 14	protein-coding
30555	chr10	79708321	79708580	+	0	NA	intron (NM_001278495, intron 2 of 6)	MLT1A|LTR|ERVL-MaLR	5223	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
79903	chr16	1615451	1615550	+	0	NA	intron (NM_020825, intron 2 of 20)	intron (NM_020825, intron 2 of 20)	3140	NM_020825	57585		NM_020825	ENSG00000007545	CRAMP1	CRAMP1L|HN1L|TCE4	cramped chromatin regulator homolog 1	protein-coding
45013	chr11	117010171	117010580	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	88053	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
147991	chr20	63014621	63015400	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	5627	NR_033370	63930		NR_033370	ENSG00000272259	LINC01749	-	long intergenic non-protein coding RNA 1749	ncRNA
89538	chr16	89195651	89196200	+	0	NA	TTS (NM_004933)	TTS (NM_004933)	4612	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
99315	chr17	49829851	49830650	+	0	NA	3' UTR (NM_007067, exon 15 of 15)	3' UTR (NM_007067, exon 15 of 15)	-15636	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
21668	chr1	206699351	206699830	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	14685	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
15940	chr1	151825371	151825530	+	0	NA	intron (NM_005060, intron 2 of 10)	intron (NM_005060, intron 2 of 10)	646	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
126699	chr2	30156901	30157830	+	0	NA	intron (NM_001127401, intron 4 of 4)	intron (NM_001127401, intron 4 of 4)	10358	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
170005	chr3	180611621	180612080	+	0	NA	TTS (NM_133462)	TTS (NM_133462)	9687	NM_001288582	151613		NM_133462	ENSG00000163728	TTC14	DRDL5813|PRO19630	tetratricopeptide repeat domain 14	protein-coding
33162	chr10	112565621	112565700	+	0	NA	intron (NM_001365710, intron 5 of 7)	intron (NM_001365710, intron 5 of 7)	-68510	NR_036177	100422909		NR_036177	ENSG00000264763	MIR4295	-	microRNA 4295	ncRNA
71752	chr15	20783321	20784380	+	0	NA	Intergenic	CpG	-27699	NR_027992	606		NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
188108	chr5	150375421	150375880	+	0	NA	intron (NM_001371623, intron 11 of 26)	intron (NM_001371623, intron 11 of 26)	17953	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
141793	chr20	251501	251700	+	0	NA	Intergenic	MER67C|LTR|ERV1	-6124	NM_207469	400830		NM_207469	ENSG00000186458	DEFB132	BD-32|DEFB-32|DEFB32|HEL-75|KFLL827|UNQ827	defensin beta 132	protein-coding
232004	chr9	133354651	133355000	+	0	NA	exon (NM_003172, exon 3 of 9)	exon (NM_003172, exon 3 of 9)	1660	NM_001280787	6834		NM_003172	ENSG00000148290	SURF1	CMT4K|MC4DN1|SHY1	SURF1 cytochrome c oxidase assembly factor	protein-coding
146266	chr20	49024221	49024480	+	0	NA	intron (NM_006420, intron 35 of 38)	MER102a|DNA|hAT-Charlie	21706	NR_110625	102723483		NR_110624	ENSG00000227431	CSE1L-DT	CSE1L-AS1	CSE1L divergent transcript	ncRNA
151463	chr21	46207401	46207600	+	0	NA	exon (NM_001001438, exon 15 of 23)	exon (NM_001001438, exon 15 of 23)	-13341	NR_145780	109623452		NR_145780		SNORD159	-	small nucleolar RNA, C/D box 159	snoRNA
185183	chr5	119363121	119364700	+	0	NA	intron (NM_014350, intron 1 of 1)	MER21C|LTR|ERVL	7891	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
104761	chr17	81695501	81695700	+	0	NA	intron (NM_004712, intron 14 of 21)	MIR3|SINE|MIR	1843	NR_106844	102465471		NR_106844	ENSG00000277784	MIR6786	hsa-mir-6786	microRNA 6786	ncRNA
238260	chrX	148282671	148282830	+	0	NA	Intergenic	L2a|LINE|L2	-217867	NM_001169124	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
23445	chr1	228453851	228454150	+	0	NA	Intergenic	Intergenic	3873	NM_033445	92815		NM_033445	ENSG00000181218	H2AC25	H2AW|HIST3H2A	H2A clustered histone 25	protein-coding
91639	chr17	5434251	5434700	+	0	NA	intron (NM_001212, intron 3 of 5)	AluSc|SINE|Alu	4680	NM_001212	708		NM_001212	ENSG00000108561	C1QBP	COXPD33|GC1QBP|HABP1|SF2AP32|SF2p32|gC1Q-R|gC1qR|p32	complement C1q binding protein	protein-coding
95631	chr17	37742201	37743230	+	0	NA	intron (NM_000458, intron 1 of 8)	CpG	2344	NM_001304286	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
212166	chr7	116872171	116872330	+	0	NA	intron (NM_006136, intron 1 of 9)	intron (NM_006136, intron 1 of 9)	9663	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
25924	chr10	11327201	11327400	+	0	NA	intron (NM_001326330, intron 12 of 12)	intron (NM_001326330, intron 12 of 12)	17374	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70304	chr14	101811051	101811550	+	0	NA	intron (NM_178587, intron 1 of 11)	intron (NM_178587, intron 1 of 11)	1437	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
112660	chr19	6887521	6887980	+	0	NA	intron (NM_001974, intron 1 of 20)	intron (NM_001974, intron 1 of 20)	171	NM_001256253	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
232331	chr9	135299041	135299150	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-44154	NM_173520	157927		NM_173520	ENSG00000178243	LINC02907	C9orf62	long intergenic non-protein coding RNA 2907	ncRNA
203532	chr7	834151	834650	+	0	NA	intron (NM_001367695, intron 2 of 19)	intron (NM_001367695, intron 2 of 19)	1924	NM_001130965	23353		NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
211709	chr7	106866721	106867180	+	0	NA	intron (NM_002649, intron 1 of 10)	intron (NM_002649, intron 1 of 10)	1471	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
184976	chr5	113513201	113514530	+	0	NA	5' UTR (NM_022828, exon 1 of 30)	5' UTR (NM_022828, exon 1 of 30)	171	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
173566	chr4	10102351	10104300	+	0	NA	intron (NM_017491, intron 3 of 14)	intron (NM_017491, intron 3 of 14)	13474	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
106943	chr18	27517651	27517750	+	0	NA	Intergenic	L1ME1|LINE|L1	-175044	NR_134589	105372038		NR_134589		LOC105372038	-	uncharacterized LOC105372038	ncRNA
129324	chr2	68732571	68733030	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-2011	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
36834	chr11	10208021	10208380	+	0	NA	intron (NM_030962, intron 1 of 39)	MIRc|SINE|MIR	86007	NM_030962	81846		NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
52004	chr12	53970851	53972200	+	0	NA	intron (NR_047517, intron 1 of 5)	intron (NR_047517, intron 1 of 5)	-1601	NM_014212	3227		NM_014212	ENSG00000123388	HOXC11	HOX3H	homeobox C11	protein-coding
4666	chr1	22428551	22429280	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-22936	NM_014870	9923		NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
197554	chr6	79234401	79235300	+	0	NA	promoter-TSS (NM_001201363)	promoter-TSS (NM_001201363)	-168	NM_004242	9324		NM_004242	ENSG00000118418	HMGN3	PNAS-24|PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
28657	chr10	59903921	59904300	+	0	NA	intron (NM_005436, intron 1 of 8)	intron (NM_005436, intron 1 of 8)	2446	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
183823	chr5	83474451	83474750	+	0	NA	intron (NM_001164097, intron 1 of 13)	CpG	2856	NM_004385	1462		NM_004385	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
114214	chr19	11439851	11439950	+	0	NA	intron (NM_001001329, intron 5 of 17)	AluSx4|SINE|Alu	-4118	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
154294	chr22	31753251	31754950	+	0	NA	promoter-TSS (NM_001007188)	promoter-TSS (NM_001007188)	77	NM_001369903	9681		NM_014662	ENSG00000100150	DEPDC5	DEE111|DEP.5|FFEVF|FFEVF1|FPEVF	DEP domain containing 5, GATOR1 subcomplex subunit	protein-coding
104490	chr17	81142571	81143480	+	0	NA	intron (NM_001080395, intron 1 of 13)	intron (NM_001080395, intron 1 of 13)	-9717	NR_031652	100302229		NR_031652	ENSG00000221025	MIR1250	MIRN1250|hsa-mir-1250|mir-1250	microRNA 1250	ncRNA
22259	chr1	212635901	212636100	+	0	NA	Intergenic	Intergenic	11526	NM_153606	149647		NM_153606	ENSG00000162771	GARIN4	FAM71A|GARI-L4|GARIL4	golgi associated RAB2 interactor family member 4	protein-coding
112589	chr19	6677021	6678280	+	0	NA	TTS (NM_000064)	TTS (NM_000064)	-7062	NM_003807	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
153121	chr22	23704571	23705530	+	0	NA	intron (NR_024448, intron 6 of 11)	L1MA6|LINE|L1	8634	NM_001329425	266747		NM_153615	ENSG00000159496	RGL4	Rgr	ral guanine nucleotide dissociation stimulator like 4	protein-coding
121910	chr19	48410601	48411000	+	0	NA	intron (NM_000836, intron 4 of 13)	intron (NM_000836, intron 4 of 13)	17132	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
145880	chr20	45945151	45945650	+	0	NA	intron (NM_022104, intron 11 of 16)	intron (NM_022104, intron 11 of 16)	10717	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
67226	chr14	68952171	68952730	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	26852	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
221078	chr8	116902571	116902730	+	0	NA	Intergenic	Intergenic	-27850	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
66423	chr14	61522371	61522730	+	0	NA	intron (NM_006255, intron 10 of 13)	L2c|LINE|L2	47644	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
107104	chr18	35057051	35057450	+	0	NA	intron (NR_046177, intron 1 of 6)	AluSp|SINE|Alu	15837	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
134503	chr2	143339001	143339400	+	0	NA	intron (NM_018460, intron 6 of 13)	MIR1_Amn|SINE|MIR	209781	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
206193	chr7	28180501	28181780	+	0	NA	promoter-TSS (NM_175061)	promoter-TSS (NM_175061)	-345	NM_175061	221895		NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
218957	chr8	61095221	61095550	+	0	NA	Intergenic	Intergenic	-127637	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
83573	chr16	28138971	28139900	+	0	NA	intron (NM_001270940, intron 10 of 24)	L1MEf|LINE|L1	72530	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
214017	chr7	143261101	143261300	+	0	NA	intron (NR_133932, intron 2 of 2)	AluSx1|SINE|Alu	-2229	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
46089	chr11	122841371	122841830	+	0	NA	intron (NM_019604, intron 1 of 9)	AluY|SINE|Alu	3100	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
36017	chr11	2909321	2909980	+	0	NA	exon (NM_002555, exon 5 of 11).2	exon (NM_002555, exon 5 of 11).2	-6075	NR_169304	5003		NM_007105	ENSG00000254827	SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	SLC22A18 antisense RNA	ncRNA
66375	chr14	61480871	61481380	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	89069	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
130086	chr2	74502751	74504130	+	0	NA	promoter-TSS (NM_001009812)	promoter-TSS (NM_001009812)	-124	NM_001009812	85474		NM_001009812	ENSG00000179528	LBX2	LP3727	ladybird homeobox 2	protein-coding
169149	chr3	156484101	156484930	+	0	NA	intron (NM_172160, intron 8 of 13)	intron (NM_172160, intron 8 of 13)	-37579	NR_046618	100874084		NR_046618	ENSG00000242370	KCNAB1-AS1	-	KCNAB1 antisense RNA 1	ncRNA
141694	chr2	241816971	241817830	+	0	NA	TTS (NM_001167600)	TTS (NM_001167600)	6004	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
229043	chr9	114329721	114330400	+	0	NA	intron (NM_000608, intron 1 of 5)	intron (NM_000608, intron 1 of 5)	191	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
132207	chr2	102082501	102083400	+	0	NA	intron (NM_001288706, intron 1 of 11)	intron (NM_001288706, intron 1 of 11)	12560	NM_001320978	3554		NM_000877	ENSG00000115594	IL1R1	CD121A|CRMO3|D2S1473|IL-1R-alpha|IL-1RT1|IL1R|IL1RA|P80	interleukin 1 receptor type 1	protein-coding
54619	chr12	92592871	92593030	+	0	NA	Intergenic	Intergenic	-109893	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
202209	chr6	156781371	156781780	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-1844	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
53869	chr12	70247251	70247700	+	0	NA	intron (NR_037615, intron 1 of 16)	intron (NR_037615, intron 1 of 16)	3761	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
71556	chr14	106324071	106324530	+	0	NA	Intergenic	Intergenic	36626	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
37164	chr11	13868921	13870400	+	0	NA	intron (NR_149109, intron 1 of 3)	intron (NR_149109, intron 1 of 3)	956	NR_149109	105376561		NR_149109	ENSG00000254930	LINC02545	-	long intergenic non-protein coding RNA 2545	ncRNA
41857	chr11	67168151	67169000	+	0	NA	intron (NM_012308, intron 2 of 20)	intron (NM_012308, intron 2 of 20)	49312	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
128980	chr2	64695801	64696000	+	0	NA	Intergenic	MER68|LTR|ERVL	-41987	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
72152	chr15	29089451	29090200	+	0	NA	intron (NM_001353793, intron 5 of 12).2	intron (NM_001353793, intron 5 of 12).2	19167	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
218607	chr8	56059921	56060530	+	0	NA	Intergenic	Intergenic	13676	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
19649	chr1	180234271	180234530	+	0	NA	intron (NM_033343, intron 1 of 5)	CpG-2007	4136	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
47479	chr12	3913351	3913650	+	0	NA	Intergenic	Intergenic	-40052	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
155881	chr22	39513501	39513800	+	0	NA	exon (NM_001304564, exon 6 of 7)	exon (NM_001304564, exon 6 of 7)	-6909	NM_001675	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
169092	chr3	154319451	154320050	+	0	NA	intron (NM_020865, intron 1 of 24)	MLT1I|LTR|ERVL-MaLR	4737	NM_020865	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
143120	chr20	23423221	23423530	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-1856	NM_001283020	63908		NM_022080	ENSG00000125814	NAPB	DEE107|SNAP-BETA|SNAPB	NSF attachment protein beta	protein-coding
229349	chr9	120922771	120922930	+	0	NA	intron (NM_005658, intron 3 of 7)	AluJb|SINE|Alu	3946	NM_005658	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
32899	chr10	110165371	110166200	+	0	NA	Intergenic	Intergenic	-13805	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
88001	chr16	80803801	80805680	+	0	NA	promoter-TSS (NM_152342)	promoter-TSS (NM_152342)	-142	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
27048	chr10	27110951	27111330	+	0	NA	3' UTR (NM_014263, exon 19 of 19)	3' UTR (NM_014263, exon 19 of 19)	-10646	NM_001256053	22852		NM_014915	ENSG00000107890	ANKRD26	THC2|bA145E8.1	ankyrin repeat domain containing 26	protein-coding
51792	chr12	53370701	53372450	+	0	NA	Intergenic	Intergenic	-8601	NM_001251825	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
75060	chr15	64237801	64238000	+	0	NA	intron (NM_001329607, intron 4 of 11)	intron (NM_001329607, intron 4 of 11)	-74878	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
137864	chr2	200827751	200828050	+	0	NA	TTS (NM_001321693)	TTS (NM_001321693)	15514	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
175844	chr4	78768821	78769080	+	0	NA	Intergenic	Intergenic	-7400	NM_017593	55589		NM_017593	ENSG00000138756	BMP2K	BIKE|HRIHFB2017	BMP2 inducible kinase	protein-coding
35433	chr11	1439171	1439330	+	0	NA	intron (NM_001256630, intron 3 of 19)	intron (NM_001256630, intron 3 of 19)	28098	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
69195	chr14	92666151	92666450	+	0	NA	intron (NM_024832, intron 7 of 9)	intron (NM_024832, intron 7 of 9)	82327	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
62347	chr13	99191821	99192480	+	0	NA	Intergenic	Intergenic	8605	NR_036532	100289373		NR_036531	ENSG00000228889	UBAC2-AS1	-	UBAC2 antisense RNA 1	ncRNA
221934	chr8	129880271	129880430	+	0	NA	intron (NM_001353257, intron 2 of 11)	intron (NM_001353257, intron 2 of 11)	59461	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
26492	chr10	17805901	17806230	+	0	NA	Intergenic	LTR1B1|LTR|ERV1	-3283	NM_002438	4360		NM_002438	ENSG00000260314	MRC1	CD206|CLEC13D|CLEC13DL|MMR|MRC1L1|bA541I19.1|hMR	mannose receptor C-type 1	protein-coding
200205	chr6	131205371	131205530	+	0	NA	intron (NR_164834, intron 8 of 9)	intron (NR_164834, intron 8 of 9)	-44954	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
206342	chr7	30332151	30332530	+	0	NA	intron (NM_147128, intron 2 of 4)	intron (NM_147128, intron 2 of 4)	-37710	NR_002186	222161		NM_152747		DKFZP586I1420	-	uncharacterized protein DKFZp586I1420	pseudo
107472	chr18	47023771	47024630	+	0	NA	intron (NM_001353908, intron 3 of 11)	CpG	11417	NM_016427	51224		NM_016427	ENSG00000206181	ELOA2	HsT832|TCEB3B|TCEB3L	elongin A2	protein-coding
112948	chr19	7748871	7749030	+	0	NA	Intergenic	MER66C|LTR|ERV1	-1416	NM_001144897	30835		NM_021155	ENSG00000090659	CD209	CDSIGN|CLEC4L|DC-SIGN|DC-SIGN1|hDC-SIGN	CD209 molecule	protein-coding
50243	chr12	46243951	46244780	+	0	NA	intron (NM_001077484, intron 1 of 16)	LTR67B|LTR|ERVL	22151	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
89947	chr16	89744101	89744580	+	0	NA	intron (NM_001286167, intron 36 of 42)	intron (NM_001286167, intron 36 of 42)	22803	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
34589	chr10	133252101	133252550	+	0	NA	Intergenic	Intergenic	-4440	NR_108079	101927671		NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
166526	chr3	114454821	114455230	+	0	NA	intron (NR_121661, intron 1 of 2)	GA-rich|Low_complexity|Low_complexity	1432	NR_121661	101929754		NR_121661	ENSG00000242290	ZBTB20-AS5	-	ZBTB20 antisense RNA 5	ncRNA
73666	chr15	44726101	44727480	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-2198	NR_125376	100419583		NR_125376		LOC100419583	-	ring finger protein 4 pseudogene	pseudo
11284	chr1	89197951	89199190	+	0	NA	intron (NM_052941, intron 1 of 10)	intron (NM_052941, intron 1 of 10)	372	NM_052941	115361		NM_052941	ENSG00000162654	GBP4	Mpa2	guanylate binding protein 4	protein-coding
77340	chr15	82533101	82533700	+	0	NA	Intergenic	Intergenic	7057	NM_001021	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
214384	chr7	149774621	149775050	+	0	NA	Intergenic	Intergenic	-1207	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
44517	chr11	107589851	107590590	+	0	NA	promoter-TSS (NM_001130037)	promoter-TSS (NM_001130037)	-871	NM_001308018	55531		NM_018712	ENSG00000110675	ELMOD1	-	ELMO domain containing 1	protein-coding
182697	chr5	68219171	68219530	+	0	NA	intron (NM_181523, intron 1 of 15)	intron (NM_181523, intron 1 of 15)	3594	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
58820	chr12	132830601	132830800	+	0	NA	Intergenic	L1MD|LINE|L1	-1831	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
74816	chr15	63477901	63478100	+	0	NA	Intergenic	L1MB5|LINE|L1	-26511	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
123619	chr19	54535201	54535600	+	0	NA	intron (NR_104097, intron 3 of 7).3	intron (NR_104097, intron 3 of 7).3	2708	NR_026716	90011		NM_033206	ENSG00000290933	KIR3DX1	KIR3DL0|LENG12	killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)	pseudo
210813	chr7	100876971	100877800	+	0	NA	intron (NM_015908, intron 2 of 19)	AluSc|SINE|Alu	2282	NM_001128852	51593		NM_015908	ENSG00000087087	SRRT	ARS2|ASR2|serrate	serrate, RNA effector molecule	protein-coding
75095	chr15	64443721	64444530	+	0	NA	intron (NR_135855, intron 10 of 11)	intron (NR_135855, intron 10 of 11)	-16453	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
180941	chr5	34923851	34924200	+	0	NA	intron (NM_018321, intron 8 of 9)	intron (NM_018321, intron 8 of 9)	-5534	NM_194283	134218		NM_194283	ENSG00000168724	DNAJC21	BMFS3|DNAJA5|GS3|JJJ1	DnaJ heat shock protein family (Hsp40) member C21	protein-coding
25368	chr10	6423851	6424380	+	0	NA	intron (NM_001323267, intron 17 of 17)	LTR78|LTR|ERV1	73799	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
69408	chr14	94055421	94055900	+	0	NA	intron (NM_020414, intron 6 of 8).2	MER117|DNA|hAT-Charlie	25542	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
126677	chr2	29325401	29325800	+	0	NA	intron (NM_004304, intron 6 of 28)	intron (NM_004304, intron 6 of 28)	-101700	NM_001353765	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
69160	chr14	92585571	92586700	+	0	NA	intron (NM_024832, intron 3 of 9)	MIRb|SINE|MIR	9901	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
211631	chr7	106101921	106102180	+	0	NA	intron (NM_001381912, intron 1 of 4)	MLT1F1|LTR|ERVL-MaLR	10262	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
131360	chr2	96181971	96182130	+	0	NA	Intergenic	Tigger9b|DNA|TcMar-Tigger	-26366	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
25677	chr10	8414771	8415180	+	0	NA	Intergenic	L1PA10|LINE|L1	-146670	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
187642	chr5	143014151	143014330	+	0	NA	intron (NR_146198, intron 12 of 22)	intron (NR_146198, intron 12 of 22)	-145330	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
51981	chr12	53953051	53953350	+	0	NA	Intergenic	CpG	-1703	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
55989	chr12	110286801	110287500	+	0	NA	intron (NM_170665, intron 3 of 19)	AluSx1|SINE|Alu	5903	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
63512	chr13	114266551	114267200	+	0	NA	intron (NM_001330104, intron 16 of 16)	AluY|SINE|Alu	-6953	NR_039724	100616227		NR_039724	ENSG00000265450	MIR4502	-	microRNA 4502	ncRNA
123787	chr19	55134471	55135230	+	0	NA	intron (NM_003283, intron 11 of 13)	(GGGGA)n|Simple_repeat|Simple_repeat	-11558	NR_107015	102466872		NR_107015	ENSG00000275863	MIR7975	hsa-mir-7975	microRNA 7975	ncRNA
146298	chr20	49166421	49167050	+	0	NA	intron (NM_001322930, intron 1 of 12)	intron (NM_001322930, intron 1 of 12)	21599	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
92090	chr17	7563571	7564150	+	0	NA	intron (NM_015670, intron 2 of 10)	intron (NM_015670, intron 2 of 10)	1868	NR_037926	100533955		NR_037926		SENP3-EIF4A1	-	SENP3-EIF4A1 readthrough (NMD candidate)	ncRNA
30448	chr10	79074171	79074950	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	5594	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
178916	chr4	158770551	158770950	+	0	NA	intron (NM_020840, intron 1 of 16)	intron (NM_020840, intron 1 of 16)	1724	NM_001346043	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
174056	chr4	26891401	26891600	+	0	NA	intron (NM_020860, intron 1 of 11)	MLT2C2|LTR|ERVL	30659	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
212198	chr7	117135051	117135350	+	0	NA	intron (NM_001369606, intron 8 of 16)	intron (NM_001369606, intron 8 of 16)	10392	NR_002331	93654		NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
49240	chr12	19421601	19422000	+	0	NA	Intergenic	Intergenic	-17692	NM_153207	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
97293	chr17	43176051	43176650	+	0	NA	intron (NM_001291572, intron 2 of 17)	intron (NM_001291572, intron 2 of 17)	5136	NM_001291572	4077		NM_005899	ENSG00000188554	NBR1	1A1-3B|IAI3B|M17S2|MIG19	NBR1 autophagy cargo receptor	protein-coding
96496	chr17	40307901	40308330	+	0	NA	Intergenic	Intergenic	-1065	NM_000964	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
173598	chr4	10577071	10577230	+	0	NA	intron (NM_052964, intron 4 of 18)	intron (NM_052964, intron 4 of 18)	107618	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
80189	chr16	2134401	2134600	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	1381	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
115406	chr19	15288521	15289100	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-8359	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
93758	chr17	19979901	19980400	+	0	NA	Intergenic	CpG	-2294	NM_001330152	11216		NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A-kinase anchoring protein 10	protein-coding
214230	chr7	148863571	148863730	+	0	NA	intron (NM_001203248, intron 1 of 19)	intron (NM_001203248, intron 1 of 19)	19835	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
55238	chr12	101872751	101873050	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4680	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
213750	chr7	140451251	140452030	+	0	NA	Intergenic	Intergenic	27865	NM_013446	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
171986	chr4	930911	933030	+	0	NA	promoter-TSS (NM_001297426)	promoter-TSS (NM_001297426)	346	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
63388	chr13	114062551	114063080	+	0	NA	intron (NM_001320821, intron 2 of 25).2	L1MB7|LINE|L1	15140	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
92065	chr17	7512551	7513650	+	0	NA	exon (NM_000937, exon 29 of 30)	exon (NM_000937, exon 29 of 30)	28734	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
65824	chr14	54888051	54889000	+	0	NA	intron (NM_001024024, intron 1 of 6)	AluY|SINE|Alu	-10332	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
110585	chr19	2160801	2161300	+	0	NA	Intergenic	Intergenic	-2883	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
521	chr1	1216671	1217500	+	0	NA	3' UTR (NM_016176, exon 7 of 7)	3' UTR (NM_016176, exon 7 of 7)	-2932	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
107565	chr18	48817051	48817430	+	0	NA	exon (NM_001142397, exon 11 of 13)	exon (NM_001142397, exon 11 of 13)	125567	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
161362	chr3	40462721	40463450	+	0	NA	3' UTR (NM_003973, exon 6 of 6)	3' UTR (NM_003973, exon 6 of 6)	5746	NM_001034996	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
100835	chr17	64117421	64117950	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	12459	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
179543	chr4	185039821	185040450	+	0	NA	Intergenic	Intergenic	-11761	NR_147059	101928877		NR_147059	ENSG00000250754	LINC02436	-	long intergenic non-protein coding RNA 2436	ncRNA
176740	chr4	101416121	101416380	+	0	NA	Intergenic	MER52A|LTR|ERV1	68473	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
78453	chr15	92843851	92844380	+	0	NA	Intergenic	Intergenic	-38728	NR_037600	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
163815	chr3	52439001	52439200	+	0	NA	intron (NM_020163, intron 12 of 15)	intron (NM_020163, intron 12 of 15)	6003	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
171578	chr3	197001151	197001750	+	0	NA	TTS (NM_005929)	TTS (NM_005929)	-1456	NR_038285	100507057		NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1|PLANE	MELTF antisense RNA 1	ncRNA
60491	chr13	41286201	41287000	+	0	NA	intron (NM_001354073, intron 1 of 14)	intron (NM_001354073, intron 1 of 14)	-23024	NM_004294	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
60805	chr13	45333621	45333880	+	0	NA	3' UTR (NM_001286273, exon 5 of 5)	3' UTR (NM_001286273, exon 5 of 5)	2697	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
177150	chr4	108130671	108131130	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	35897	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
80387	chr16	2544001	2544750	+	0	NA	intron (NM_031268, intron 1 of 10)	intron (NM_031268, intron 1 of 10)	6354	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
154788	chr22	36775551	36777300	+	0	NA	promoter-TSS (NM_001177701)	promoter-TSS (NM_001177701)	-306	NR_033531	11020		NM_006860	ENSG00000100360	IFT27	BBS19|CFAP156|FAP156|RABL4|RAYL	intraflagellar transport 27	protein-coding
169176	chr3	156685251	156685350	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	8636	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
102765	chr17	76284721	76285180	+	0	NA	intron (NM_032134, intron 7 of 18)	L1MB7|LINE|L1	19602	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
2665	chr1	10498201	10499200	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	23750	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
131736	chr2	98438551	98439250	+	0	NA	Intergenic	L1M4|LINE|L1	-5687	NM_001351424	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
48667	chr12	10501121	10501400	+	0	NA	Intergenic	L1MC4|LINE|L1	-4633	NM_001357731	255308		NM_001357731	ENSG00000180574	EIF2S3B	EIF2S3L|eIF-2gA|eIF2gA	eukaryotic translation initiation factor 2 subunit gamma B	protein-coding
53520	chr12	66900651	66900750	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-96431	NM_001379348	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
107	chr1	484471	484630	+	0	NA	Intergenic	L2a|LINE|L2	10895	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
15442	chr1	150297721	150297980	+	0	NA	intron (NM_031901, intron 2 of 2)	intron (NM_031901, intron 2 of 2)	3989	NM_031901	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
33908	chr10	124586371	124586530	+	0	NA	intron (NM_022126, intron 6 of 6)	L2c|LINE|L2	-117578	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
42269	chr11	68215221	68215680	+	0	NA	Intergenic	Intergenic	-1802	NM_001300909	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
93278	chr17	18093971	18095400	+	0	NA	intron (NM_001330144, intron 2 of 12)	L2a|LINE|L2	6737	NM_001388	1819		NM_001388	ENSG00000108591	DRG2	-	developmentally regulated GTP binding protein 2	protein-coding
234335	chrX	14809651	14809750	+	0	NA	Intergenic	L1PA6|LINE|L1	63369	NM_152633	2187		NM_152633	ENSG00000181544	FANCB	FA2|FAAP90|FAAP95|FAB|FACB	FA complementation group B	protein-coding
30626	chr10	80356571	80357480	+	0	NA	promoter-TSS (NM_001269053)	promoter-TSS (NM_001269053)	244	NM_032372	84332		NM_032372	ENSG00000133665	DYDC2	-	DPY30 domain containing 2	protein-coding
215297	chr7	157297971	157298130	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-38954	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
85853	chr16	57021451	57021550	+	0	NA	intron (NM_001384955, intron 3 of 47)	AluJr|SINE|Alu	31943	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
68812	chr14	91256021	91256800	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2530	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
114800	chr19	13788921	13789530	+	0	NA	Intergenic	AluJr|SINE|Alu	-6218	NM_001367834	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
178662	chr4	152485621	152486500	+	0	NA	intron (NM_001349798, intron 2 of 13)	Tigger3b|DNA|TcMar-Tigger	3356	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
40644	chr11	64727201	64727630	+	0	NA	intron (NM_001098670, intron 15 of 16)	intron (NM_001098670, intron 15 of 16)	-4218	NM_001376267	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
149835	chr21	35034801	35035000	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	4526	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
48378	chr12	9455571	9455730	+	0	NA	intron (NR_153413, intron 1 of 45)	Tigger3b|DNA|TcMar-Tigger	7363	NR_153413	408186		NR_153413		LOC408186	OVOS|OVOS1	alpha-2-macroglobulin like 1 pseudogene	pseudo
76874	chr15	77959121	77959750	+	0	NA	Intergenic	Intergenic	-14874	NR_157580	440292		NR_157580		COMMD4P1	-	COMM domain containing 4 pseudogene 1	pseudo
10596	chr1	67426801	67427930	+	0	NA	intron (NM_001018067, intron 1 of 7)	intron (NM_001018067, intron 1 of 7)	3037	NM_001018067	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
155014	chr22	37416321	37417780	+	0	NA	intron (NM_052906, intron 2 of 2)	intron (NM_052906, intron 2 of 2)	10420	NR_110512	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
115094	chr19	14248301	14249950	+	0	NA	Intergenic	CpG	-42956	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
105868	chr18	3151301	3151750	+	0	NA	intron (NM_019856, intron 12 of 36)	intron (NM_019856, intron 12 of 36)	68443	NM_019856	8736		NM_003803	ENSG00000101605	MYOM1	SKELEMIN	myomesin 1	protein-coding
189681	chr5	176402701	176403450	+	0	NA	intron (NM_007097, intron 2 of 5)	AluSx1|SINE|Alu	7748	NM_001364126	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
184949	chr5	113022301	113023300	+	0	NA	TTS (NM_001242377)	TTS (NM_001242377)	46002	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
145752	chr20	45111971	45112200	+	0	NA	intron (NM_145652, intron 1 of 3)	intron (NM_145652, intron 1 of 3)	3089	NM_145652	149708		NM_145652	ENSG00000175121	WFDC5	PRG5|WAP1|dJ211D12.5	WAP four-disulfide core domain 5	protein-coding
3801	chr1	16725321	16726050	+	0	NA	Intergenic	Intergenic	-5528	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
130534	chr2	85642921	85643180	+	0	NA	intron (NM_001256726, intron 10 of 11)	FLAM_C|SINE|Alu	25149	NM_001367281	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
233151	chr9	137169001	137170250	+	0	NA	promoter-TSS (NR_037416)	promoter-TSS (NR_037416)	-355	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
111265	chr19	3538601	3539150	+	0	NA	promoter-TSS (NM_001135580)	promoter-TSS (NM_001135580)	-282	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
196224	chr6	42790851	42791180	+	0	NA	non-coding (NR_134654, exon 2 of 2)	non-coding (NR_134654, exon 2 of 2)	7519	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
62149	chr13	97015771	97016080	+	0	NA	Intergenic	Intergenic	-21195	NM_001346195	27199		NM_080818	ENSG00000165621	OXGR1	CAON2|GPR80|GPR99|P2RY15|P2Y15|aKGR	oxoglutarate receptor 1	protein-coding
17209	chr1	156262571	156263000	+	0	NA	intron (NM_001323616, intron 14 of 22)	intron (NM_001323616, intron 14 of 22)	-14668	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
125225	chr2	10340121	10340580	+	0	NA	intron (NM_001258357, intron 1 of 4)	intron (NM_001258357, intron 1 of 4)	10187	NM_001258357	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
45196	chr11	117606271	117606430	+	0	NA	intron (NM_020693, intron 3 of 32)	L3|LINE|CR1	190866	NM_020693	57453		NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
21867	chr1	207644721	207645650	+	0	NA	promoter-TSS (NM_175710)	promoter-TSS (NM_175710)	52	NM_175710	1379		NM_175710	ENSG00000197721	CR1L	-	complement C3b/C4b receptor 1 like	protein-coding
39845	chr11	62370971	62371880	+	0	NA	intron (NM_001083926, intron 4 of 6)	intron (NM_001083926, intron 4 of 6)	33977	NM_001083926	80150		NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase and isoaspartyl peptidase 1	protein-coding
232468	chr9	136200601	136201000	+	0	NA	intron (NM_178138, intron 1 of 5)	CpG-29079	874	NM_001363746	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
223066	chr8	143390451	143390630	+	0	NA	Intergenic	Intergenic	21664	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
208636	chr7	72992771	72993500	+	0	NA	Intergenic	MIR|SINE|MIR	12808	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
13227	chr1	112670121	112670580	+	0	NA	3' UTR (NM_006135, exon 10 of 10)	3' UTR (NM_006135, exon 10 of 10)	-3962	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
67703	chr14	73258121	73258780	+	0	NA	intron (NM_173462, intron 13 of 25)	intron (NM_173462, intron 13 of 25)	-12449	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
108130	chr18	62418271	62418630	+	0	NA	Intergenic	Intergenic	93140	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
146683	chr20	50522501	50522900	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	12317	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
126858	chr2	31935121	31935630	+	0	NA	intron (NR_163998, intron 3 of 8)	intron (NR_163998, intron 3 of 8)	75389	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
138183	chr2	202652021	202652280	+	0	NA	intron (NM_173511, intron 1 of 7)	AluJr|SINE|Alu	17181	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
12695	chr1	109485551	109485650	+	0	NA	intron (NM_001350177, intron 2 of 11)	intron (NM_001350177, intron 2 of 11)	1641	NM_001350177	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
86454	chr16	66930201	66931000	+	0	NA	Intergenic	L1MC5a|LINE|L1	3802	NR_024525	51647		NM_016062	ENSG00000166595	CIAO2B	CGI-128|CIA2B|FAM96B|MIP18	cytosolic iron-sulfur assembly component 2B	protein-coding
87598	chr16	73890871	73891230	+	0	NA	Intergenic	Intergenic	324471	NR_104657	101928035		NR_104657	ENSG00000261404	PSMD7-DT	-	PSMD7 divergent transcript	ncRNA
192903	chr6	27591901	27592100	+	0	NA	Intergenic	Intergenic	-102035	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
135108	chr2	157405521	157406000	+	0	NA	Intergenic	L1PA4|LINE|L1	-25251	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
224556	chr9	19405251	19405650	+	0	NA	Intergenic	AluJb|SINE|Alu	-3559	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
61967	chr13	79407451	79407550	+	0	NA	intron (NR_038991, intron 1 of 6)	L1MB3|LINE|L1	1191	NR_038991	100505538		NR_038991	ENSG00000227354	RBM26-AS1	-	RBM26 antisense RNA 1	ncRNA
201184	chr6	143097051	143097630	+	0	NA	intron (NM_001366344, intron 2 of 6)	L2|LINE|L2	-28799	NM_001366358	51390		NM_016108	ENSG00000146416	AIG1	AIG-1|dJ95L4.1	androgen induced 1	protein-coding
96285	chr17	39924201	39925200	+	0	NA	intron (NM_139280, intron 1 of 3)	intron (NM_139280, intron 1 of 3)	2146	NM_001320801	94103		NM_016471	ENSG00000172057	ORMDL3	-	ORMDL sphingolipid biosynthesis regulator 3	protein-coding
157697	chr22	46367451	46368180	+	0	NA	exon (NM_014246, exon 28 of 35)	exon (NM_014246, exon 28 of 35)	32101	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
117617	chr19	23251251	23251350	+	0	NA	promoter-TSS (NM_001355405)	promoter-TSS (NM_001355405)	-906	NM_001355406	440519		NM_001355404	ENSG00000196081	ZNF724	ZNF724P	zinc finger protein 724	protein-coding
81140	chr16	4401021	4401700	+	0	NA	intron (NM_001351729, intron 6 of 27)	intron (NM_001351729, intron 6 of 27)	14537	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
105896	chr18	3281301	3282050	+	0	NA	Intergenic	Intergenic	18956	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
92320	chr17	8135471	8135630	+	0	NA	Intergenic	AluSx4|SINE|Alu	9521	NR_106943	102465532		NR_106943	ENSG00000284117	MIR6883	hsa-mir-6883	microRNA 6883	ncRNA
28912	chr10	63162571	63162930	+	0	NA	Intergenic	Intergenic	29422	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
208114	chr7	58345551	58345650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	895423	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
119419	chr19	40279651	40279850	+	0	NA	intron (NM_001243027, intron 1 of 13)	intron (NM_001243027, intron 1 of 13)	2891	NR_030371	693226		NR_030371	ENSG00000207631	MIR641	MIRN641|hsa-mir-641|mir-641	microRNA 641	ncRNA
159499	chr3	14274551	14274650	+	0	NA	Intergenic	MER66A|LTR|ERV1	77968	NR_110135	101927565		NR_110135	ENSG00000251576	LINC01267	-	long intergenic non-protein coding RNA 1267	ncRNA
12660	chr1	109273671	109274030	+	0	NA	intron (NM_001408, intron 33 of 33)	intron (NM_001408, intron 33 of 33)	9294	NM_001350237	84722		NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
149769	chr21	34808301	34809050	+	0	NA	intron (NM_001754, intron 7 of 8)	MIRc|SINE|MIR	62850	NR_038886	100506385		NR_038885	ENSG00000234380	LINC01426	lincRNA-uc002yug.2	long intergenic non-protein coding RNA 1426	ncRNA
143674	chr20	32019951	32020430	+	0	NA	intron (NM_080625, intron 5 of 8)	intron (NM_080625, intron 5 of 8)	9752	NM_080625	140706		NM_080625	ENSG00000101331	CCM2L	C20orf160|dJ310O13.5	CCM2 like scaffold protein	protein-coding
192653	chr6	26180301	26180930	+	0	NA	Intergenic	Intergenic	-3146	NM_003523	8344		NM_003523	ENSG00000274290	H2BC6	H2B.h|H2B/h|H2BC10|H2BC4|H2BC7|H2BC8|H2BFH|HIST1H2BE|dJ221C16.8	H2B clustered histone 6	protein-coding
155387	chr22	38314241	38314500	+	0	NA	intron (NM_001289912, intron 5 of 14)	intron (NM_001289912, intron 5 of 14)	3063	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
131113	chr2	90291151	90291580	+	0	NA	Intergenic	(CCAAGCCAG)n|Simple_repeat|Simple_repeat	-653458	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
86232	chr16	58123951	58124800	+	0	NA	intron (NR_136632, intron 1 of 5)	intron (NR_136632, intron 1 of 5)	5006	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
24005	chr1	235249921	235250380	+	0	NA	intron (NM_016374, intron 6 of 23)	intron (NM_016374, intron 6 of 23)	-60034	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
168551	chr3	146547201	146547730	+	0	NA	Intergenic	Charlie3|DNA|hAT-Charlie	-2858	NM_021105	5359		NM_021105	ENSG00000188313	PLSCR1	MMTRA1B	phospholipid scramblase 1	protein-coding
232496	chr9	136259521	136260030	+	0	NA	intron (NM_001378188, intron 20 of 25)	intron (NM_001378188, intron 20 of 25)	-13963	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
223098	chr8	143429501	143429700	+	0	NA	exon (NM_201589, exon 1 of 1)	exon (NM_201589, exon 1 of 1)	1132	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
230510	chr9	128277751	128278250	+	0	NA	intron (NM_001040011, intron 2 of 4)	AluSz|SINE|Alu	1724	NM_001040011	375757		NM_001040011	ENSG00000175854	SWI5	C9orf119|SAE3	SWI5 homologous recombination repair protein	protein-coding
45358	chr11	118249901	118250530	+	0	NA	intron (NM_198275, intron 1 of 5)	AluSz|SINE|Alu	2150	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
9462	chr1	50430951	50431050	+	0	NA	Intergenic	Intergenic	-7557	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
139090	chr2	218879701	218881350	+	0	NA	promoter-TSS (NM_025216)	promoter-TSS (NM_025216)	-327	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
203655	chr7	987751	988050	+	0	NA	intron (NM_017781, intron 7 of 8)	intron (NM_017781, intron 7 of 8)	4719	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
53671	chr12	68440171	68440530	+	0	NA	intron (NR_120458, intron 2 of 3)	intron (NR_120458, intron 2 of 3)	11134	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
184588	chr5	102865501	102866300	+	0	NA	promoter-TSS (NM_001177306)	promoter-TSS (NM_001177306)	77	NR_033440	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
102839	chr17	76472071	76472430	+	0	NA	intron (NR_164787, intron 18 of 18)	L2a|LINE|L2	4647	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
232837	chr9	136759271	136760180	+	0	NA	TTS (NM_203347)	TTS (NM_203347)	-1182	NM_001345934	138307		NM_178469	ENSG00000204001	LCN8	EP17|LCN5	lipocalin 8	protein-coding
215122	chr7	155349571	155349750	+	0	NA	Intergenic	Intergenic	18273	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
179270	chr4	176277501	176277780	+	0	NA	Intergenic	Intergenic	-8418	NM_080874	140458		NM_080874	ENSG00000164122	ASB5	ASB-5	ankyrin repeat and SOCS box containing 5	protein-coding
218365	chr8	43138921	43139200	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-1404	NM_001363229	138050		NM_025070	ENSG00000165102	HGSNAT	HGNAT|MPS3C|RP73|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
88873	chr16	87698501	87699330	+	0	NA	TTS (NR_073379)	TTS (NR_073379)	67071	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
58738	chr12	132602051	132602150	+	0	NA	Intergenic	CpG	8482	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
146784	chr20	50919321	50919880	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-9809	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
221162	chr8	119866751	119867500	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-6530	NM_001283012	64798		NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6|hDEPTOR	DEP domain containing MTOR interacting protein	protein-coding
230767	chr9	128907851	128908150	+	0	NA	exon (NM_001127245, exon 2 of 3)	exon (NM_001127245, exon 2 of 3)	-12982	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
75473	chr15	65956021	65956100	+	0	NA	intron (NR_169558, intron 10 of 22)	intron (NR_169558, intron 10 of 22)	-84173	NR_036196	100422905		NR_036196	ENSG00000263512	MIR4311	-	microRNA 4311	ncRNA
22779	chr1	224420451	224420950	+	0	NA	intron (NM_001115113, intron 4 of 13)	intron (NM_001115113, intron 4 of 13)	-13940	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
9735	chr1	53219801	53221230	+	0	NA	intron (NM_017887, intron 1 of 7)	CpG	119	NM_017887	54987		NM_017887	ENSG00000162384	CZIB	C1orf123	CXXC motif containing zinc binding protein	protein-coding
100769	chr17	63988651	63989400	+	0	NA	Intergenic	Intergenic	-9326	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
32525	chr10	102901371	102901700	+	0	NA	non-coding (NR_037644, exon 15 of 15)	non-coding (NR_037644, exon 15 of 15)	-16759	NM_017649	54805		NM_017649	ENSG00000148842	CNNM2	ACDP2|HOMG6|HOMGSMR	cyclin and CBS domain divalent metal cation transport mediator 2	protein-coding
117789	chr19	29837471	29838400	+	0	NA	Intergenic	Intergenic	25944	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
156135	chr22	40116301	40117580	+	0	NA	intron (NM_001024843, intron 1 of 23)	MIR|SINE|MIR	-60985	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
167256	chr3	128588251	128588550	+	0	NA	Intergenic	Intergenic	-12314	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
203905	chr7	1499201	1499430	+	0	NA	exon (NM_001080453, exon 7 of 48)	exon (NM_001080453, exon 7 of 48)	5074	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
58569	chr12	132427871	132429380	+	0	NA	Intergenic	Intergenic	-61526	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
98916	chr17	48605001	48605800	+	0	NA	promoter-TSS (NM_018952)	promoter-TSS (NM_018952)	-414	NM_018952	3216		NM_018952	ENSG00000108511	HOXB6	HOX2|HOX2B|HU-2|Hox-2.2	homeobox B6	protein-coding
144486	chr20	35645471	35645830	+	0	NA	intron (NM_152926, intron 1 of 15)	intron (NM_152926, intron 1 of 15)	8259	NM_003915	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
235439	chrX	45909851	45909950	+	0	NA	Intergenic	AluY|SINE|Alu	-58410	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
105437	chr17	82905301	82905500	+	0	NA	intron (NM_005993, intron 19 of 38)	intron (NM_005993, intron 19 of 38)	-65378	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
213882	chr7	142419221	142419480	+	0	NA	intron (NM_001363538, intron 11 of 11)	AluSq2|SINE|Alu	-55177	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
152642	chr22	21519971	21520130	+	0	NA	Intergenic	AluSx|SINE|Alu	-2559	NR_003700	375133		NR_003700	ENSG00000293427	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
192754	chr6	26439321	26439600	+	0	NA	Intergenic	Intergenic	-1044	NM_197974	10384		NM_006994	ENSG00000111801	BTN3A3	BTF3|BTN3.3	butyrophilin subfamily 3 member A3	protein-coding
143773	chr20	32415121	32415580	+	0	NA	intron (NM_015338, intron 3 of 11)	HAL1|LINE|L1	56285	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
6778	chr1	30757451	30758230	+	0	NA	promoter-TSS (NM_006762)	promoter-TSS (NM_006762)	-66	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
191628	chr6	12638071	12638230	+	0	NA	Intergenic	Intergenic	-52746	NR_149140	101928309		NR_149140	ENSG00000234015	LINC02530	-	long intergenic non-protein coding RNA 2530	ncRNA
198425	chr6	106089771	106090480	+	0	NA	intron (NM_001198, intron 2 of 6)	MIRc|SINE|MIR	3789	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
229376	chr9	121077971	121078650	+	0	NA	intron (NM_001369894, intron 1 of 29)	AluSx|SINE|Alu	3355	NM_001369896	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
47600	chr12	4918971	4919330	+	0	NA	TTS (NM_000217)	TTS (NM_000217)	9245	NM_000217	3736		NM_000217	ENSG00000111262	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel subfamily A member 1	protein-coding
183241	chr5	76390871	76391430	+	0	NA	Intergenic	Intergenic	-12135	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
1436	chr1	2623001	2623400	+	0	NA	intron (NM_033467, intron 2 of 23)	L1MEd|LINE|L1	9816	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
75325	chr15	65311121	65311380	+	0	NA	Intergenic	AluSg|SINE|Alu	6573	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
20905	chr1	202167651	202168150	+	0	NA	promoter-TSS (NR_002930)	promoter-TSS (NR_002930)	-151	NR_002930	148713		NR_002930	ENSG00000293457	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase receptor type V, pseudogene	pseudo
78570	chr15	93023571	93023930	+	0	NA	intron (NM_001271, intron 38 of 38)	L1MB5|LINE|L1	49406	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
236813	chrX	79167521	79168380	+	0	NA	intron (NM_032553, intron 2 of 2)	intron (NM_032553, intron 2 of 2)	23262	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
103873	chr17	79774521	79775530	+	0	NA	Intergenic	Intergenic	-3123	NM_005189	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
20652	chr1	200075671	200075830	+	0	NA	intron (NM_205860, intron 5 of 7)	intron (NM_205860, intron 5 of 7)	32925	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
71066	chr14	104825371	104827000	+	0	NA	Intergenic	Intergenic	4984	NR_024396	196872		NM_152646	ENSG00000258701	VESTAR	LINC00638	VEGFC mRNA stability associated lncRNA	ncRNA
43313	chr11	76234751	76236400	+	0	NA	Intergenic	CpG	-29073	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
140869	chr2	237473621	237474330	+	0	NA	Intergenic	Intergenic	-12435	NM_001281474	79083		NM_024101	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding
87954	chr16	79617721	79618930	+	0	NA	Intergenic	Intergenic	-17588	NM_001031804	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
161671	chr3	43347021	43348200	+	0	NA	exon (NM_001330750, exon 5 of 5)	exon (NM_001330750, exon 5 of 5)	4352	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
104926	chr17	81922151	81922450	+	0	NA	3' UTR (NM_002359, exon 3 of 3)	3' UTR (NM_002359, exon 3 of 3)	1166	NM_032711	4097		NM_002359	ENSG00000197063	MAFG	hMAF	MAF bZIP transcription factor G	protein-coding
70768	chr14	103452551	103452650	+	0	NA	intron (NM_002376, intron 5 of 15)	AluY|SINE|Alu	67185	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
114842	chr19	13834971	13835150	+	0	NA	non-coding (NR_036515, exon 1 of 1)	non-coding (NR_036515, exon 1 of 1)	1299	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
144367	chr20	35089121	35089600	+	0	NA	intron (NM_199368, intron 1 of 18)	AluJb|SINE|Alu	3447	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
158533	chr3	3191851	3192550	+	0	NA	Intergenic	LTR36|LTR|ERV1	-12483	NM_001173482	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
106884	chr18	24433821	24434080	+	0	NA	intron (NM_018439, intron 4 of 10)	AluSz|SINE|Alu	7280	NM_018439	55364		NM_018439	ENSG00000154059	IMPACT	RWDD5	impact RWD domain protein	protein-coding
51803	chr12	53389871	53390030	+	0	NA	intron (NM_138473, intron 3 of 5)	intron (NM_138473, intron 3 of 5)	9306	NM_003109	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
221158	chr8	119855271	119856800	+	0	NA	promoter-TSS (NM_024094)	promoter-TSS (NM_024094)	-141	NM_024094	79075		NM_024094	ENSG00000136982	DSCC1	DCC1	DNA replication and sister chromatid cohesion 1	protein-coding
227570	chr9	92276271	92277200	+	0	NA	intron (NM_001378571, intron 9 of 33)	intron (NM_001378571, intron 9 of 33)	15812	NR_037424	100500918		NR_037424	ENSG00000281156	MIR3651	mir-3651	microRNA 3651	ncRNA
170141	chr3	183430321	183430880	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-2331	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
70539	chr14	102509101	102511600	+	0	NA	promoter-TSS (NM_152326)	promoter-TSS (NM_152326)	-574	NM_001348652	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
37142	chr11	13462451	13463880	+	0	NA	promoter-TSS (NM_032320)	promoter-TSS (NM_032320)	57	NM_032320	84280		NM_032320	ENSG00000148925	BTBD10	GMRP-1|GMRP1	BTB domain containing 10	protein-coding
167127	chr3	127682621	127682880	+	0	NA	Intergenic	Intergenic	9798	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
36005	chr11	2895871	2896280	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-3616	NM_183233	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
53355	chr12	64652671	64653230	+	0	NA	intron (NR_040718, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	-30345	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52835	chr12	57069301	57070050	+	0	NA	intron (NM_001130963, intron 3 of 8)	intron (NM_001130963, intron 3 of 8)	9116	NM_001130963	23306		NM_015257	ENSG00000166881	NEMP1	TMEM194|TMEM194A	nuclear envelope integral membrane protein 1	protein-coding
142739	chr20	10357651	10358150	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	74025	NM_018848	8195		NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	MKKS centrosomal shuttling protein	protein-coding
223414	chr8	143936351	143937330	+	0	NA	intron (NM_201383, intron 5 of 31)	intron (NM_201383, intron 5 of 31)	2757	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
188116	chr5	150384321	150384580	+	0	NA	3' UTR (NM_001008657, exon 18 of 18)	3' UTR (NM_001008657, exon 18 of 18)	26753	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
164270	chr3	57570871	57571030	+	0	NA	TTS (NM_001660)	TTS (NM_001660)	14676	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
136585	chr2	178190921	178191530	+	0	NA	Intergenic	MLT2E|LTR|ERVL	-3256	NM_001201482	114880		NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
178371	chr4	146458271	146458830	+	0	NA	intron (NR_133924, intron 4 of 9)	LTR109A2|LTR|ERV1	49967	NR_107003	102465837		NR_107003	ENSG00000278438	MIR7849	hsa-mir-7849	microRNA 7849	ncRNA
90656	chr17	1678901	1679700	+	0	NA	exon (NM_006445, exon 10 of 43)	exon (NM_006445, exon 10 of 43)	5567	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
109869	chr19	1237101	1239010	+	0	NA	promoter-TSS (NM_152769)	promoter-TSS (NM_152769)	-50	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
155466	chr22	38485271	38485450	+	0	NA	3' UTR (NM_001098504, exon 13 of 13)	3' UTR (NM_001098504, exon 13 of 13)	17264	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
145796	chr20	45410001	45410600	+	0	NA	non-coding (NR_003189, exon 6 of 6)	non-coding (NR_003189, exon 6 of 6)	2011	NM_001048225	55861		NM_018478	ENSG00000244274	DBNDD2	C20orf35|CK1BP|HSMNP1	dysbindin domain containing 2	protein-coding
176702	chr4	101037871	101038550	+	0	NA	intron (NM_001130692, intron 10 of 11)	intron (NM_001130692, intron 10 of 11)	202662	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
181186	chr5	39115121	39115380	+	0	NA	intron (NM_199335, intron 15 of 17)	AluSz|SINE|Alu	-40851	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
126862	chr2	31962871	31963230	+	0	NA	intron (NM_001371918, intron 2 of 10)	MLT2B4|LTR|ERVL	47714	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
222123	chr8	131920221	131920680	+	0	NA	intron (NM_001323557, intron 1 of 22)	intron (NM_001323557, intron 1 of 22)	3677	NM_001323557	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
98213	chr17	46139421	46139950	+	0	NA	intron (NM_015443, intron 2 of 14).2	MIRb|SINE|MIR	53097	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
162029	chr3	46663771	46664100	+	0	NA	Intergenic	Intergenic	29744	NM_147129	259173		NM_147129	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
12876	chr1	110207401	110208430	+	0	NA	TTS (NR_046546)	TTS (NR_046546)	2072	NR_046546	100873974		NR_046546		KCNC4-DT	KCNC4-AS1|LINC02586	KCNC4 divergent transcript	ncRNA
232452	chr9	136131971	136132230	+	0	NA	Intergenic	Intergenic	13080	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
209107	chr7	74908371	74909000	+	0	NA	intron (NM_001382555, intron 5 of 7)	AluY|SINE|Alu	6393	NM_001382555	100101268		NM_001382555	ENSG00000184616	SPDYE12	SPDYE12P	speedy/RINGO cell cycle regulator family member E12	protein-coding
139109	chr2	218908651	218909480	+	0	NA	intron (NR_110238, intron 3 of 4)	CpG	21572	NR_110238	101928537		NR_110238	ENSG00000228135	LINC01494	-	long intergenic non-protein coding RNA 1494	ncRNA
8023	chr1	38040671	38040830	+	0	NA	Intergenic	Intergenic	6043	NM_002699	5453		NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
115685	chr19	16191621	16192080	+	0	NA	3' UTR (NM_014077, exon 4 of 4)	3' UTR (NM_014077, exon 4 of 4)	-6061	NM_032493	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
175212	chr4	56762721	56763180	+	0	NA	Intergenic	Intergenic	58523	NR_073419	6691		NM_021114	ENSG00000128040	SPINK2	HUSI-II|SPGF29	serine peptidase inhibitor Kazal type 2	protein-coding
142951	chr20	19317301	19317700	+	0	NA	intron (NM_020689, intron 2 of 16)	intron (NM_020689, intron 2 of 16)	-32904	NR_024564	100130264		NR_024564	ENSG00000179447	SLC24A3-AS1	-	SLC24A3 antisense RNA 1	ncRNA
59386	chr13	24925001	24925400	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2339	NR_047595	55835		NM_018451	ENSG00000151849	CENPJ	BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4	centromere protein J	protein-coding
3732	chr1	16630571	16630800	+	0	NA	intron (NR_026752, intron 1 of 6)	intron (NR_026752, intron 1 of 6)	221	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
111403	chr19	3766601	3767350	+	0	NA	intron (NM_172251, intron 2 of 2)	intron (NM_172251, intron 2 of 2)	4293	NM_172251	116541		NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54|mL54	mitochondrial ribosomal protein L54	protein-coding
92555	chr17	8963001	8964000	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	2207	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
83818	chr16	28838471	28838900	+	0	NA	Intergenic	Intergenic	5322	NR_039872	100616256		NR_039872	ENSG00000283845	MIR4721	-	microRNA 4721	ncRNA
84668	chr16	30755821	30756080	+	0	NA	intron (NM_000294, intron 6 of 9)	intron (NM_000294, intron 6 of 9)	-5662	NM_001207034	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
152600	chr22	21382751	21383200	+	0	NA	promoter-TSS (NM_001128633)	promoter-TSS (NM_001128633)	-399	NM_001128633	150221		NM_001128633	ENSG00000183246	RIMBP3C	RIM-BP3.3|RIMBP3.3	RIMS binding protein 3C	protein-coding
175983	chr4	81509251	81510030	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-37733	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
187422	chr5	142006601	142007700	+	0	NA	intron (NM_005471, intron 3 of 6)	L1MB2|LINE|L1	5877	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
164543	chr3	63961671	63962300	+	0	NA	intron (NM_001177387, intron 4 of 12)	intron (NM_001177387, intron 4 of 12)	-5809	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
188634	chr5	157219521	157220500	+	0	NA	intron (NM_005546, intron 5 of 16)	intron (NM_005546, intron 5 of 16)	39170	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
17880	chr1	160068901	160069100	+	0	NA	intron (NM_002241, intron 1 of 1)	intron (NM_002241, intron 1 of 1)	1160	NM_002241	3766		NM_002241	ENSG00000177807	KCNJ10	BIRK-10|KCNJ13-PEN|KIR1.2|KIR4.1|SESAME	potassium inwardly rectifying channel subfamily J member 10	protein-coding
89290	chr16	88697921	88699200	+	0	NA	exon (NM_001171816, exon 5 of 6)	exon (NM_001171816, exon 5 of 6)	5021	NM_001171816	115992		NM_178841	ENSG00000158717	RNF166	-	ring finger protein 166	protein-coding
123430	chr19	54113971	54114790	+	0	NA	intron (NM_001321792, intron 2 of 5).5	intron (NM_001321792, intron 2 of 5).5	694	NM_001321792	29844		NM_013342	ENSG00000105619	TFPT	FB1|INO80F|amida	TCF3 fusion partner	protein-coding
178908	chr4	158669971	158670130	+	0	NA	intron (NR_077234, intron 1 of 1)	AluSp|SINE|Alu	1837	NM_001008393	201725		NM_001008393	ENSG00000205208	C4orf46	RCDG1	chromosome 4 open reading frame 46	protein-coding
105852	chr18	3016601	3017150	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-3731	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
162323	chr3	47477601	47477830	+	0	NA	Intergenic	AluJo|SINE|Alu	-1774	NM_001320044	22937		NM_012235	ENSG00000114650	SCAP	-	SREBF chaperone	protein-coding
196981	chr6	53187821	53188880	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-39509	NM_003643	8521		NM_003643	ENSG00000137270	GCM1	GCMA|hGCMa	glial cells missing transcription factor 1	protein-coding
93039	chr17	17304501	17305100	+	0	NA	intron (NM_020201, intron 1 of 4)	MIRc|SINE|MIR	1427	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
155498	chr22	38652671	38653180	+	0	NA	intron (NM_001384271, intron 1 of 14)	intron (NM_001384271, intron 1 of 14)	3467	NM_001013647	646851		NM_001013647	ENSG00000184949	FAM227A	-	family with sequence similarity 227 member A	protein-coding
115418	chr19	15300271	15300430	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluSx1|SINE|Alu	-19899	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
3465	chr1	15947121	15947400	+	0	NA	intron (NM_001242884, intron 2 of 14)	intron (NM_001242884, intron 2 of 14)	28841	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
184311	chr5	96893401	96893900	+	0	NA	intron (NM_001130140, intron 6 of 18)	intron (NM_001130140, intron 6 of 18)	17150	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
142601	chr20	5582271	5583350	+	0	NA	intron (NM_019593, intron 6 of 19)	AluSz|SINE|Alu	28196	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
145768	chr20	45353571	45353930	+	0	NA	Intergenic	Intergenic	-5326	NM_002999	6385		NM_002999	ENSG00000124145	SDC4	SYND4	syndecan 4	protein-coding
5188	chr1	24949951	24950050	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	15010	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
25704	chr10	8986651	8986950	+	0	NA	Intergenic	Intergenic	88811	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
109735	chr19	1098001	1099180	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-3198	NM_001316324	5434		NM_002695	ENSG00000099817	POLR2E	RPABC1|RPB5|XAP4|hRPB25|hsRPB5	RNA polymerase II, I and III subunit E	protein-coding
224592	chr9	20339901	20340300	+	0	NA	Intergenic	Intergenic	71138	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
157315	chr22	44586821	44587280	+	0	NA	Intergenic	Intergenic	17710	NR_028411	388910		NM_001012986	ENSG00000187012	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
152950	chr22	22883921	22884400	+	0	NA	Intergenic	Intergenic	-2107	NR_049835	100847006		NR_049835	ENSG00000264824	MIR5571	-	microRNA 5571	ncRNA
117395	chr19	19609571	19610000	+	0	NA	intron (NM_025245, intron 1 of 7)	AluY|SINE|Alu	8902	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
89265	chr16	88662591	88664480	+	0	NA	promoter-TSS (NM_002461)	promoter-TSS (NM_002461)	162	NR_024399	197187		NM_144986	ENSG00000260630	SNAI3-AS1	-	SNAI3 antisense RNA 1	ncRNA
162247	chr3	47279101	47279830	+	0	NA	intron (NM_022342, intron 1 of 19)	AluSx1|SINE|Alu	3133	NM_001377477	64147		NM_022342	ENSG00000088727	KIF9	-	kinesin family member 9	protein-coding
160025	chr3	18417021	18417280	+	0	NA	intron (NM_001322876, intron 1 of 9)	intron (NM_001322876, intron 1 of 9)	8189	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
83111	chr16	22481721	22482450	+	0	NA	intron (NR_027154, intron 19 of 28)	intron (NR_027154, intron 19 of 28)	-22364	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
178658	chr4	152462001	152462400	+	0	NA	intron (NM_001349798, intron 2 of 13)	L1M4a1|LINE|L1	27216	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
171455	chr3	196334721	196335430	+	0	NA	intron (NM_138461, intron 1 of 4)	intron (NM_138461, intron 1 of 4)	3313	NM_138461	116211		NM_138461	ENSG00000145107	TM4SF19	OCTM4	transmembrane 4 L six family member 19	protein-coding
174176	chr4	36292451	36292880	+	0	NA	intron (NR_165630, intron 3 of 10)	intron (NR_165630, intron 3 of 10)	11049	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
150184	chr21	39305601	39306000	+	0	NA	intron (NM_033656, intron 4 of 40)	AluSc|SINE|Alu	7832	NM_033656	54014		NM_018963	ENSG00000185658	BRWD1	C21orf107|CILD51|DCAF19|N143|WDR9|WRD9	bromodomain and WD repeat domain containing 1	protein-coding
183082	chr5	73792571	73793070	+	0	NA	intron (NM_001177693, intron 7 of 35)	intron (NM_001177693, intron 7 of 35)	-20726	NM_001244364	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
188733	chr5	157486301	157487230	+	0	NA	intron (NM_033274, intron 21 of 22)	MLT1B|LTR|ERVL-MaLR	26552	NM_001099287	348938		NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN|NIPA4|SLC57A6	NIPA like domain containing 4	protein-coding
53406	chr12	64730151	64731080	+	0	NA	intron (NM_002076, intron 9 of 13)	intron (NM_002076, intron 9 of 13)	28791	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
44505	chr11	106086151	106086450	+	0	NA	intron (NM_015423, intron 2 of 5)	MLT1C|LTR|ERVL-MaLR	-8562	NM_001330359	143879		NM_152433	ENSG00000182359	KBTBD3	BKLHD3	kelch repeat and BTB domain containing 3	protein-coding
21155	chr1	203694321	203694780	+	0	NA	intron (NM_001365783, intron 2 of 20)	L2a|LINE|L2	-35031	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
49997	chr12	42237121	42237800	+	0	NA	intron (NM_001190980, intron 2 of 2)	CpG	788	NM_005748	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
167292	chr3	128652251	128652550	+	0	NA	Intergenic	AluJb|SINE|Alu	-1582	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
4941	chr1	23963101	23963300	+	0	NA	3' UTR (NM_017761, exon 3 of 3)	3' UTR (NM_017761, exon 3 of 3)	3372	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
107638	chr18	48955571	48956700	+	0	NA	Intergenic	Intergenic	-5424	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
142865	chr20	17664121	17665130	+	0	NA	intron (NM_004587, intron 1 of 24)	intron (NM_004587, intron 1 of 24)	17617	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
84377	chr16	30278351	30279130	+	0	NA	Intergenic	Intergenic	-30327	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
42481	chr11	69915571	69915800	+	0	NA	Intergenic	MIRb|SINE|MIR	-70222	NM_001378092	55107		NM_018043	ENSG00000131620	ANO1	DOG1|INDMS|MYMY7|ORAOV2|TAOS2|TMEM16A	anoctamin 1	protein-coding
239438	chrY	56703401	56704000	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-250555	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
78621	chr15	94233071	94233230	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	1589	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
227327	chr9	89447171	89447600	+	0	NA	intron (NM_001371200, intron 2 of 20)	L2b|LINE|L2	32505	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
75550	chr15	66853121	66853600	+	0	NA	Intergenic	Intergenic	103155	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
116086	chr19	17259251	17259750	+	0	NA	intron (NR_135632, intron 6 of 13)	intron (NR_135632, intron 6 of 13)	5245	NM_001297703	83878		NM_031941	ENSG00000130307	USHBP1	AIEBP|MCC2	USH1 protein network component harmonin binding protein 1	protein-coding
140735	chr2	234454401	234455100	+	0	NA	promoter-TSS (NR_146988)	promoter-TSS (NR_146988)	-155	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
161358	chr3	40459601	40460150	+	0	NA	intron (NM_001034996, intron 3 of 5)	AluY|SINE|Alu	2536	NM_001034996	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
32350	chr10	102351001	102351380	+	0	NA	intron (NR_165087, intron 4 of 38)	intron (NR_165087, intron 4 of 38)	-42920	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
33830	chr10	123994151	123994980	+	0	NA	Intergenic	Intergenic	97841	NM_014863	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
227243	chr9	89317071	89317500	+	0	NA	TTS (NM_001827)	TTS (NM_001827)	-1215	NM_001354698	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
231091	chr9	129797051	129797150	+	0	NA	Intergenic	Charlie2a|DNA|hAT-Charlie	-6043	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
224747	chr9	21810851	21811150	+	0	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	8364	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
60034	chr13	32645071	32645230	+	0	NA	intron (NM_015032, intron 1 of 34)	AluJr|SINE|Alu	58698	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
233071	chr9	137084871	137085400	+	0	NA	TTS (NM_207309)	TTS (NM_207309)	1682	NR_027447	100289341		NR_027447	ENSG00000268996	MAN1B1-DT	MAN1B1-AS1	MAN1B1 divergent transcript	ncRNA
98335	chr17	46277051	46277630	+	0	NA	intron (NM_001103154, intron 4 of 4)	intron (NM_001103154, intron 4 of 4)	-17791	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
106011	chr18	7963421	7963880	+	0	NA	intron (NM_001378146, intron 3 of 29)	MIR3|SINE|MIR	16775	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
216510	chr8	20276721	20277250	+	0	NA	intron (NR_047509, intron 1 of 2)	MER41B|LTR|ERV1	1212	NR_047509	100874051		NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA
219713	chr8	81002071	81002530	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	109768	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
84179	chr16	29820021	29820800	+	0	NA	promoter-TSS (NM_005115)	promoter-TSS (NM_005115)	16	NM_017458	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
85146	chr16	46389671	46391630	+	0	NA	Intergenic	Intergenic	178447	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
204038	chr7	1935601	1935800	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	4871	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
14124	chr1	120944471	120945180	+	0	NA	intron (NR_109754, intron 1 of 2)	L2c|LINE|L2	2225	NR_104073	101954264		NR_104073	ENSG00000277610	RNVU1-4	RNU1-102|RNU1-50|RNVU1-5|vU1.4|vU1.5	RNA, variant U1 small nuclear 4	snRNA
213023	chr7	131027091	131028230	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	79370	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
88518	chr16	85330571	85331030	+	0	NA	Intergenic	Intergenic	-24475	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
40662	chr11	64747521	64748480	+	0	NA	intron (NM_001164716, intron 15 of 17)	AluSx|SINE|Alu	-2544	NM_153819	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
135634	chr2	168234221	168234880	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	13045	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
88382	chr16	84609421	84610130	+	0	NA	intron (NM_021149, intron 2 of 3)	THE1C|LTR|ERVL-MaLR	8303	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
26589	chr10	22103621	22104000	+	0	NA	Intergenic	Intergenic	-100080	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
34492	chr10	132542351	132543080	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	4928	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
80694	chr16	3054151	3054250	+	0	NA	intron (NR_123723, intron 4 of 4)	intron (NR_123723, intron 4 of 4)	5170	NR_123723	100507419		NR_123723		MMP25-AS1	-	MMP25 antisense RNA 1	ncRNA
27823	chr10	38038101	38039180	+	0	NA	intron (NM_001278179, intron 5 of 5)	L1MC3|LINE|L1	27965	NM_001324177	7581		NM_006954	ENSG00000189180	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
50946	chr12	49404051	49404480	+	0	NA	intron (NM_001293285, intron 3 of 14)	L2c|LINE|L2	15091	NR_033267	100335030		NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
227821	chr9	93317071	93317230	+	0	NA	intron (NM_001282394, intron 28 of 29)	intron (NM_001282394, intron 28 of 29)	29153	NR_166069	445577		NM_001098808		FAM120A2P	C9orf129|bA165J3.3	family with sequence similarity 120A2, pseudogene	pseudo
27992	chr10	43107271	43107430	+	0	NA	intron (NM_020975, intron 5 of 19)	intron (NM_020975, intron 5 of 19)	2618	NM_001355216	5979		NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1	ret proto-oncogene	protein-coding
169056	chr3	153221521	153223050	+	0	NA	Intergenic	Intergenic	60059	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
135733	chr2	169463721	169464200	+	0	NA	Intergenic	Intergenic	-15534	NM_152384	129880		NM_152384	ENSG00000163093	BBS5	-	Bardet-Biedl syndrome 5	protein-coding
64934	chr14	35803151	35803250	+	0	NA	intron (NM_014990, intron 1 of 40)	L1ME1|LINE|L1	6095	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
180319	chr5	5886971	5887230	+	0	NA	Intergenic	CpG	450192	NR_028351	401172		NM_001001702	ENSG00000250490	LINC02145	-	long intergenic non-protein coding RNA 2145	ncRNA
217483	chr8	29004251	29004680	+	0	NA	intron (NM_001324391, intron 4 of 10)	intron (NM_001324391, intron 4 of 10)	113151	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
95713	chr17	38559001	38559980	+	0	NA	intron (NM_025248, intron 10 of 18)	CpG	46462	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
200463	chr6	135128301	135129730	+	0	NA	Intergenic	L2b|LINE|L2	-52293	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
165148	chr3	71875101	71875800	+	0	NA	Intergenic	Intergenic	-90302	NM_021935	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
219614	chr8	80096801	80097200	+	0	NA	intron (NM_001287144, intron 1 of 5)	Tigger1|DNA|TcMar-Tigger	-16169	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
20725	chr1	200883471	200883630	+	0	NA	Intergenic	Intergenic	-7981	NM_018265	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
216767	chr8	22492071	22492230	+	0	NA	intron (NM_005605, intron 3 of 13)	Tigger3b|DNA|TcMar-Tigger	51072	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
30579	chr10	80080051	80080150	+	0	NA	promoter-TSS (NR_027428)	promoter-TSS (NR_027428)	855	NR_072984	80195		NM_025125	ENSG00000133678	TMEM254	C10orf57|bA369J21.6	transmembrane protein 254	protein-coding
83450	chr16	27323271	27324030	+	0	NA	intron (NM_001257997, intron 1 of 9)	intron (NM_001257997, intron 1 of 9)	9676	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
113344	chr19	8649951	8650250	+	0	NA	intron (NM_001378599, intron 4 of 6)	AluSx1|SINE|Alu	-5477	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
43235	chr11	75475451	75476350	+	0	NA	intron (NM_030792, intron 3 of 16)	intron (NM_030792, intron 3 of 16)	-23573	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
19016	chr1	169642071	169642230	+	0	NA	Intergenic	Intergenic	-12026	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
3310	chr1	15400121	15400380	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-9638	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
137290	chr2	195558171	195558530	+	0	NA	Intergenic	Intergenic	-98608	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
229911	chr9	126613351	126613450	+	0	NA	promoter-TSS (NM_001174146)	promoter-TSS (NM_001174146)	-528	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
27781	chr10	35415951	35416250	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	79226	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
97996	chr17	45296001	45297000	+	0	NA	intron (NM_003954, intron 1 of 15)	AluJr4|SINE|Alu	20520	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
51071	chr12	49902621	49903030	+	0	NA	intron (NM_012306, intron 1 of 11)	intron (NM_012306, intron 1 of 11)	1075	NM_012306	23017		NM_012306	ENSG00000135472	FAIM2	LFG|LFG2|NGP35|NMP35|TMBIM2	Fas apoptotic inhibitory molecule 2	protein-coding
55079	chr12	96901251	96901550	+	0	NA	Intergenic	Intergenic	-5857	NM_152905	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
38530	chr11	45898151	45898250	+	0	NA	intron (NM_005456, intron 2 of 11)	intron (NM_005456, intron 2 of 11)	9071	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
15464	chr1	150351601	150351880	+	0	NA	intron (NR_146768, intron 15 of 15)	AluJr|SINE|Alu	-12371	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
184817	chr5	111252951	111253550	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	28866	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
54046	chr12	75926451	75926550	+	0	NA	Intergenic	Intergenic	105276	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
60817	chr13	45361171	45361400	+	0	NA	intron (NR_024458, intron 3 of 10)	intron (NR_024458, intron 3 of 10)	19940	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
177070	chr4	108046601	108046800	+	0	NA	TTS (NM_001166119)	TTS (NM_001166119)	42036	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
187950	chr5	149294801	149295200	+	0	NA	intron (NM_001146337, intron 1 of 17)	MIRb|SINE|MIR	23141	NM_001146337	134265		NM_152406	ENSG00000157510	AFAP1L1	-	actin filament associated protein 1 like 1	protein-coding
144605	chr20	35819301	35819730	+	0	NA	intron (NM_016436, intron 2 of 17)	intron (NM_016436, intron 2 of 17)	47500	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
182315	chr5	58934151	58934850	+	0	NA	Intergenic	Intergenic	65398	NM_001197223	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
28204	chr10	44966551	44967230	+	0	NA	intron (NM_032023, intron 1 of 10)	MER41E|LTR|ERV1	7088	NM_032023	83937		NM_032023	ENSG00000107551	RASSF4	AD037	Ras association domain family member 4	protein-coding
219136	chr8	66113901	66115030	+	0	NA	Intergenic	Intergenic	-12664	NM_184086	84675		NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
17133	chr1	156176921	156177430	+	0	NA	3' UTR (NM_001193300, exon 16 of 16)	3' UTR (NM_001193300, exon 16 of 16)	-16929	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
178877	chr4	155376071	155377330	+	0	NA	intron (NM_001039580, intron 1 of 13)	CpG	265	NM_001039580	79884		NM_024826	ENSG00000164114	MAP9	ASAP	microtubule associated protein 9	protein-coding
33728	chr10	122298601	122299280	+	0	NA	intron (NM_144587, intron 8 of 15)	intron (NM_144587, intron 8 of 15)	27644	NM_001318189	118663		NM_144587	ENSG00000138152	BTBD16	C10orf87	BTB domain containing 16	protein-coding
225348	chr9	34651951	34652830	+	0	NA	intron (NM_001142784, intron 1 of 12)	intron (NM_001142784, intron 1 of 12)	205	NM_001142784	3590		NM_004512	ENSG00000137070	IL11RA	CRSDA	interleukin 11 receptor subunit alpha	protein-coding
29430	chr10	70323951	70324050	+	0	NA	exon (NM_207119, exon 4 of 5)	exon (NM_207119, exon 4 of 5)	-39996	NM_022146	64106		NM_022146	ENSG00000148734	NPFFR1	GPR147|NPFF1|NPFF1R1|OT7T022	neuropeptide FF receptor 1	protein-coding
73870	chr15	50346571	50347080	+	0	NA	intron (NM_001320910, intron 1 of 9)	AluSg4|SINE|Alu	-7349	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
119630	chr19	40795101	40795300	+	0	NA	intron (NR_037791, intron 7 of 11)	intron (NR_037791, intron 7 of 11)	-3991	NM_080732	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
141085	chr2	238313451	238313550	+	0	NA	Intergenic	Intergenic	-7018	NM_015650	26146		NM_015650	ENSG00000204104	TRAF3IP1	CFAP116|FAP116|IFT54|MIP-T3|MIPT3|SLSN9	TRAF3 interacting protein 1	protein-coding
239361	chrY	19829551	19829650	+	0	NA	Intergenic	MER11B|LTR|ERVK	-84661	NM_001146705	8284		NM_004653	ENSG00000012817	KDM5D	HY|HYA|JARID1D|SMCY	lysine demethylase 5D	protein-coding
232920	chr9	136879701	136879900	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6716	NM_021138	7186		NM_021138	ENSG00000127191	TRAF2	MGC:45012|RNF117|TRAP|TRAP3	TNF receptor associated factor 2	protein-coding
2049	chr1	7826471	7826630	+	0	NA	exon (NM_001289861, exon 17 of 23)	exon (NM_001289861, exon 17 of 23)	26515	NM_006786	10911		NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
58059	chr12	124506501	124506700	+	0	NA	intron (NM_001077261, intron 2 of 47)	intron (NM_001077261, intron 2 of 47)	61012	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
180013	chr5	1010801	1011600	+	0	NA	intron (NM_001271082, intron 3 of 10).2	Charlie18a|DNA|hAT-Charlie	2238	NM_001271082	85409		NM_033120	ENSG00000145506	NKD2	Naked2	NKD inhibitor of WNT signaling pathway 2	protein-coding
20917	chr1	202186921	202187430	+	0	NA	intron (NR_002930, intron 18 of 21)	intron (NR_002930, intron 18 of 21)	-6815	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
208595	chr7	72943771	72944130	+	0	NA	intron (NM_172020, intron 12 of 13)	AluSz6|SINE|Alu	10813	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
61245	chr13	49994071	49994230	+	0	NA	intron (NR_152566, intron 11 of 13)	intron (NR_152566, intron 11 of 13)	2351	NR_037407	100500908		NR_037407	ENSG00000264864	MIR3613	-	microRNA 3613	ncRNA
148015	chr20	63099321	63099750	+	0	NA	intron (NR_152601, intron 1 of 2)	intron (NR_152601, intron 1 of 2)	-1757	NR_003244	768096		NR_003244		HAR1A	HAR1F|LINC00064|NCRNA00064	highly accelerated region 1A	ncRNA
152422	chr22	20578901	20579100	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	70953	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
144955	chr20	37098321	37098880	+	0	NA	Intergenic	AluSx|SINE|Alu	-2603	NM_002895	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
187600	chr5	142925751	142926050	+	0	NA	intron (NR_146198, intron 10 of 22)	intron (NR_146198, intron 10 of 22)	-56990	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
9554	chr1	51613951	51614250	+	0	NA	Intergenic	Intergenic	-2992	NM_148906	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
24834	chr10	353001	353200	+	0	NA	intron (NM_014974, intron 24 of 36)	intron (NM_014974, intron 24 of 36)	173106	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
66651	chr14	63875921	63876380	+	0	NA	intron (NM_015180, intron 1 of 114)	AluJo|SINE|Alu	23146	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
198645	chr6	107806551	107806950	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	17563	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
191448	chr6	10718921	10720000	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-3455	NM_001165258	51522		NM_016462	ENSG00000111843	TMEM14C	C6orf53|HSPC194|MSTP073|NET26|bA421M1.6	transmembrane protein 14C	protein-coding
74794	chr15	63392351	63392850	+	0	NA	intron (NR_120375, intron 1 of 6)	intron (NR_120375, intron 1 of 6)	2370	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
199473	chr6	118558421	118559550	+	0	NA	exon (NM_002667, exon 2 of 2)	exon (NM_002667, exon 2 of 2)	10689	NM_002667	5350		NM_002667	ENSG00000198523	PLN	CMD1P|CMH18|PLB	phospholamban	protein-coding
105780	chr18	2842251	2842550	+	0	NA	Intergenic	AluJb|SINE|Alu	-4606	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
3709	chr1	16591801	16592530	+	0	NA	5' UTR (NM_017940, exon 6 of 29)	5' UTR (NM_017940, exon 6 of 29)	21399	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
204974	chr7	6382871	6383500	+	0	NA	intron (NM_018890, intron 1 of 6)	intron (NM_018890, intron 1 of 6)	8658	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
235610	chrX	47854571	47854830	+	0	NA	intron (NM_007137, intron 2 of 4)	Tigger1|DNA|TcMar-Tigger	17798	NM_007137	347344		NM_007137	ENSG00000197779	ZNF81	HFZ20|MRX45|dJ54B20.6	zinc finger protein 81	protein-coding
213329	chr7	135214171	135214500	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-2809	NM_001362737	29062		NM_014149	ENSG00000105875	WDR91	HSPC049|SORF-1|SORF1	WD repeat domain 91	protein-coding
41165	chr11	65611451	65612430	+	0	NA	intron (NM_002419, intron 1 of 9)	intron (NM_002419, intron 1 of 9)	2281	NM_002419	4296		NM_002419	ENSG00000173327	MAP3K11	MEKK11|MLK-3|MLK3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding
174149	chr4	36242851	36243180	+	0	NA	intron (NR_146894, intron 1 of 32)	intron (NR_146894, intron 1 of 32)	924	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
206300	chr7	30147201	30147650	+	0	NA	intron (NM_152793, intron 2 of 2)	L1MEg|LINE|L1	12439	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
16863	chr1	155749371	155749880	+	0	NA	TTS (NM_001282858)	TTS (NM_001282858)	3857	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
135116	chr2	157413071	157413890	+	0	NA	Intergenic	Intergenic	30609	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
154860	chr22	37126601	37127830	+	0	NA	3' UTR (NM_001346223, exon 10 of 10)	3' UTR (NM_001346223, exon 10 of 10)	-17502	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
67923	chr14	74650871	74651030	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-38713	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
116534	chr19	18197001	18198000	+	0	NA	TTS (NM_032683)	TTS (NM_032683)	4282	NM_032683	84769		NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial inner membrane protein like 2	protein-coding
24017	chr1	235263721	235264500	+	0	NA	intron (NM_016374, intron 2 of 23)	MIRb|SINE|MIR	-63106	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
67892	chr14	74491171	74491330	+	0	NA	intron (NM_001363688, intron 1 of 3)	AluSc|SINE|Alu	2055	NM_006432	10577		NM_006432	ENSG00000119655	NPC2	EDDM1|HE1	NPC intracellular cholesterol transporter 2	protein-coding
174092	chr4	30720471	30720630	+	0	NA	5' UTR (NM_002589, exon 1 of 2)	5' UTR (NM_002589, exon 1 of 2)	181	NM_032457	5099		NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
41190	chr11	65636101	65637100	+	0	NA	TTS (NR_039839)	TTS (NR_039839)	290	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
46979	chr12	12451	13530	+	0	NA	Intergenic	Intergenic	19025	NR_130745	100288778		NR_130745	ENSG00000226210	WASH8P	-	WAS protein family homolog 8, pseudogene	pseudo
193469	chr6	30529551	30530750	+	0	NA	Intergenic	LTR8A|LTR|ERV1	13884	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
33183	chr10	113103021	113103580	+	0	NA	intron (NM_001146283, intron 5 of 12)	intron (NM_001146283, intron 5 of 12)	-23333	NM_001349871	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
147539	chr20	59495851	59496200	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-81484	NM_001199505	116154		NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
163691	chr3	52254901	52255330	+	0	NA	3' UTR (NM_025222, exon 9 of 9)	3' UTR (NM_025222, exon 9 of 9)	8948	NM_001122870	132160		NM_144641	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein-coding
151205	chr21	45137171	45137730	+	0	NA	intron (NR_027673, intron 3 of 12)	intron (NR_027673, intron 3 of 12)	-15080	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
222770	chr8	141726771	141727180	+	0	NA	Intergenic	Intergenic	59338	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
134272	chr2	135744001	135744330	+	0	NA	intron (NM_014607, intron 1 of 12)	intron (NM_014607, intron 1 of 12)	-1521	NR_163478	107985946		NM_001365239		LOC107985946	-	uncharacterized LOC107985946	ncRNA
238894	chrX	154595751	154595850	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	10646	NM_001327	1485		NM_001327	ENSG00000184033	CTAG1B	CT6.1|CTAG|CTAG1|ESO1|LAGE-2|LAGE2B|NY-ESO-1	cancer/testis antigen 1B	protein-coding
144861	chr20	36901171	36901330	+	0	NA	intron (NM_001363733, intron 13 of 15)	AluJb|SINE|Alu	25112	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
101893	chr17	74362621	74363180	+	0	NA	Intergenic	Intergenic	-1032	NM_001080466	388419		NM_001080466	ENSG00000204347	BTBD17	BTBD17A|LGALS3BPL|TANGO10A	BTB domain containing 17	protein-coding
56524	chr12	116672851	116673700	+	0	NA	Intergenic	L1PB4|LINE|L1	64794	NM_001353625	79794		NM_024738	ENSG00000111412	SPRING1	C12orf49|LUR1|POST1|SPRING	SREBF pathway regulator in golgi 1	protein-coding
47548	chr12	4286301	4286880	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-10406	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
91424	chr17	4719771	4720530	+	0	NA	intron (NM_001257330, intron 11 of 14)	intron (NM_001257330, intron 11 of 14)	9518	NM_199004	409		NM_004313	ENSG00000141480	ARRB2	ARB2|ARR2|BARR2	arrestin beta 2	protein-coding
17705	chr1	158506501	158506850	+	0	NA	Intergenic	L1M1|LINE|L1	26797	NM_001004472	343406		NM_001004472	ENSG00000198965	OR10R2	OR1-8|OR10R2Q	olfactory receptor family 10 subfamily R member 2	protein-coding
83617	chr16	28206971	28207330	+	0	NA	intron (NM_015171, intron 1 of 23)	AluSx1|SINE|Alu	4815	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
73025	chr15	40775751	40776050	+	0	NA	intron (NM_018163, intron 6 of 10)	intron (NM_018163, intron 6 of 10)	5920	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
84867	chr16	31172971	31173330	+	0	NA	Intergenic	Intergenic	-6960	NM_001170634	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
6815	chr1	30933271	30933880	+	0	NA	intron (NM_014676, intron 21 of 21)	intron (NM_014676, intron 21 of 21)	2201	NR_033295	692235		NR_033295		SNORD103B	U103B	small nucleolar RNA, C/D box 103B	snoRNA
22622	chr1	223531801	223532080	+	0	NA	Intergenic	Intergenic	133761	NM_001143962	388743		NM_001143962	ENSG00000203697	CAPN8	nCL-2	calpain 8	protein-coding
183633	chr5	80233971	80234900	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	21613	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
207270	chr7	43970121	43971400	+	0	NA	intron (NR_003655, intron 9 of 15)	intron (NR_003655, intron 9 of 15)	-27108	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
195089	chr6	35586501	35586700	+	0	NA	3' UTR (NM_001145777, exon 7 of 7)	3' UTR (NM_001145777, exon 7 of 7)	-73704	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
110720	chr19	2314071	2314580	+	0	NA	Intergenic	L1MC5|LINE|L1	-6171	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
156344	chr22	40799001	40799200	+	0	NA	intron (NM_001282727, intron 1 of 6)	intron (NM_001282727, intron 1 of 6)	14858	NR_039923	100616283		NR_039923	ENSG00000266594	MIR4766	mir-4766	microRNA 4766	ncRNA
206965	chr7	38301951	38302350	+	0	NA	Intergenic	Intergenic	-28503	NM_001003806	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
47306	chr12	1690601	1692000	+	0	NA	intron (NM_001375365, intron 1 of 7).2	CpG	230	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
678	chr1	1380701	1381100	+	0	NA	Intergenic	Intergenic	-5693	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
198971	chr6	110890351	110891000	+	0	NA	intron (NM_001634, intron 4 of 8)	AluJb|SINE|Alu	15891	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
162268	chr3	47299421	47299930	+	0	NA	intron (NM_025010, intron 1 of 9)	AluJb|SINE|Alu	16731	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
63894	chr14	21860121	21860600	+	0	NA	Intergenic	Intergenic	-189343	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
174238	chr4	37890171	37892060	+	0	NA	promoter-TSS (NM_001253912)	promoter-TSS (NM_001253912)	31	NM_001253912	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
103091	chr17	77330571	77330730	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	11135	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
26247	chr10	14616921	14617500	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-12809	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
43058	chr11	74396251	74396550	+	0	NA	intron (NM_173582, intron 1 of 13)	MER5A1|DNA|hAT-Charlie	2033	NM_173582	283209		NM_173582	ENSG00000165434	PGM2L1	BM32A|NEDHFS|PMMLP	phosphoglucomutase 2 like 1	protein-coding
213590	chr7	139382051	139382150	+	0	NA	intron (NM_016019, intron 2 of 9)	AluSc|SINE|Alu	22206	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
145747	chr20	45097571	45098030	+	0	NA	exon (NM_001322799, exon 3 of 4)	exon (NM_001322799, exon 3 of 4)	3327	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
92626	chr17	10112301	10112500	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-75743	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
42765	chr11	72741201	72741830	+	0	NA	intron (NM_001040118, intron 1 of 34)	intron (NM_001040118, intron 1 of 34)	10874	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
173758	chr4	16794871	16795030	+	0	NA	intron (NM_001290, intron 1 of 7)	L2b|LINE|L2	103695	NM_001304434	9079		NM_001290	ENSG00000169744	LDB2	CLIM1|LDB-2|LDB1	LIM domain binding 2	protein-coding
78127	chr15	90363001	90363200	+	0	NA	TTS (NM_001004309)	TTS (NM_001004309)	10816	NM_001004309	342132		NM_001004309	ENSG00000196391	ZNF774	-	zinc finger protein 774	protein-coding
134129	chr2	134150971	134151130	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	23925	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
204127	chr7	2316701	2317100	+	0	NA	Intergenic	L2b|LINE|L2	-2459	NM_013321	29886		NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
129065	chr2	65075521	65075780	+	0	NA	intron (NR_134966, intron 4 of 5)	intron (NR_134966, intron 4 of 5)	19234	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
184254	chr5	96701701	96701900	+	0	NA	promoter-TSS (NM_001330633)	promoter-TSS (NM_001330633)	-860	NM_001042446	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
99109	chr17	49208701	49209730	+	0	NA	5' UTR (NM_031498, exon 1 of 4)	5' UTR (NM_031498, exon 1 of 4)	166	NM_031498	2793		NM_031498	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG9|GNGT8|HG3I	G protein subunit gamma transducin 2	protein-coding
114432	chr19	12682951	12684250	+	0	NA	Intergenic	AluY|SINE|Alu	-1713	NM_013406	1725		NM_001930	ENSG00000095059	DHPS	DHS|DS|MIG13|NEDSSWI	deoxyhypusine synthase	protein-coding
10803	chr1	77758051	77758380	+	0	NA	intron (NM_201626, intron 1 of 21)	AluY|SINE|Alu	1637	NM_001377431	23032		NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
12366	chr1	101244851	101245150	+	0	NA	Intergenic	AluJb|SINE|Alu	7981	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
206851	chr7	37408551	37409480	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	39937	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
118076	chr19	34357571	34357730	+	0	NA	Intergenic	Intergenic	-7090	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
2574	chr1	9798071	9798230	+	0	NA	intron (NM_014944, intron 1 of 17)	intron (NM_014944, intron 1 of 17)	25815	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
64770	chr14	34628271	34629100	+	0	NA	intron (NR_159357, intron 2 of 12)	intron (NR_159357, intron 2 of 12)	1463	NR_159358	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
42790	chr11	72781171	72782630	+	0	NA	intron (NM_006645, intron 1 of 6)	intron (NM_006645, intron 1 of 6)	-1630	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
79206	chr16	349351	349850	+	0	NA	intron (NM_181050, intron 1 of 9)	intron (NM_181050, intron 1 of 9)	3123	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
172190	chr4	1244371	1244880	+	0	NA	intron (NM_001377192, intron 1 of 9)	intron (NM_001377192, intron 1 of 9)	4103	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
183734	chr5	81165421	81165780	+	0	NA	intron (NM_006909, intron 17 of 26)	intron (NM_006909, intron 17 of 26)	-67720	NM_001099736	1160		NM_001825	ENSG00000131730	CKMT2	SMTCK	creatine kinase, mitochondrial 2	protein-coding
90525	chr17	1477201	1478000	+	0	NA	intron (NM_001080779, intron 13 of 31)	intron (NM_001080779, intron 13 of 31)	7801	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
138462	chr2	206400671	206400830	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-42782	NM_003812	8745		NM_003812	ENSG00000114948	ADAM23	MDC-3|MDC3	ADAM metallopeptidase domain 23	protein-coding
22275	chr1	212721421	212722000	+	0	NA	Intergenic	Intergenic	-21870	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
140906	chr2	237694811	237695700	+	0	NA	intron (NM_001137551, intron 1 of 11)	intron (NM_001137551, intron 1 of 11)	3050	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
77428	chr15	84167271	84168600	+	0	NA	non-coding (NR_033787, exon 1 of 1)	non-coding (NR_033787, exon 1 of 1)	3049	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
162296	chr3	47411551	47411800	+	0	NA	exon (NM_015466, exon 20 of 25)	exon (NM_015466, exon 20 of 25)	30654	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
134994	chr2	152715921	152716250	+	0	NA	exon (NM_001365599, exon 2 of 25)	exon (NM_001365599, exon 2 of 25)	1376	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
37218	chr11	14414051	14414150	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-49594	NM_001177314	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
197794	chr6	87688051	87688350	+	0	NA	intron (NM_018064, intron 1 of 4)	AluSx1|SINE|Alu	14033	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
153534	chr22	26576821	26577530	+	0	NA	intron (NM_001362923, intron 1 of 7)	AluJr|SINE|Alu	-11834	NM_001008566	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
58985	chr13	19960001	19961200	+	0	NA	intron (NM_001190965, intron 2 of 24)	intron (NM_001190965, intron 2 of 24)	1576	NM_001353161	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
25513	chr10	7259001	7259700	+	0	NA	intron (NM_001029880, intron 7 of 20)	intron (NM_001029880, intron 7 of 20)	-72566	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
97581	chr17	44100751	44100850	+	0	NA	intron (NM_001382393, intron 3 of 26)	AluSc|SINE|Alu	-15112	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
140656	chr2	233856221	233856650	+	0	NA	Intergenic	MER51E|LTR|ERV1	-1869	NM_001282963	55355		NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
23994	chr1	235233101	235233300	+	0	NA	intron (NM_016374, intron 9 of 23)	AluJb|SINE|Alu	-43084	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
225861	chr9	38339151	38339650	+	0	NA	Intergenic	Intergenic	-53302	NM_000692	219		NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
166611	chr3	119321601	119321800	+	0	NA	intron (NR_046748, intron 1 of 1)	AluSx|SINE|Alu	1060	NR_046748	100874246		NR_046748	ENSG00000241155	ARHGAP31-AS1	-	ARHGAP31 antisense RNA 1	ncRNA
211821	chr7	108181101	108181330	+	0	NA	intron (NM_001371119, intron 23 of 31)	intron (NM_001371119, intron 23 of 31)	-50854	NM_001318047	22798		NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
231873	chr9	132978721	132979180	+	0	NA	promoter-TSS (NM_001377305)	promoter-TSS (NM_001377305)	256	NM_001377304	8328		NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding
46602	chr11	128548301	128549350	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	22683	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
108874	chr18	79390901	79391550	+	0	NA	Intergenic	L1M4b|LINE|L1	-4705	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
226006	chr9	41358471	41359910	+	0	NA	intron (NR_148348, intron 1 of 2)	SST1|Satellite|centr	328	NR_148348	107984035		NR_148348		LOC107984035	-	uncharacterized LOC107984035	ncRNA
47937	chr12	6825101	6826330	+	0	NA	intron (NM_014449, intron 3 of 4)	intron (NM_014449, intron 3 of 4)	-2692	NM_014262	10536		NM_014262	ENSG00000110811	P3H3	GRCB|HSU47926|LEPREL2	prolyl 3-hydroxylase 3	protein-coding
141553	chr2	241469721	241469980	+	0	NA	intron (NM_014808, intron 18 of 26)	intron (NM_014808, intron 18 of 26)	-8055	NR_036083	100422942		NR_036083	ENSG00000263752	MIR3133	-	microRNA 3133	ncRNA
204292	chr7	2666171	2666580	+	0	NA	Intergenic	Intergenic	-13147	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
109906	chr19	1285021	1285480	+	0	NA	promoter-TSS (NM_001405)	promoter-TSS (NM_001405)	-623	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
82033	chr16	12081301	12081700	+	0	NA	intron (NM_032167, intron 11 of 20)	intron (NM_032167, intron 11 of 20)	104766	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
178899	chr4	158210171	158210530	+	0	NA	promoter-TSS (NM_018342)	promoter-TSS (NM_018342)	-136	NM_018342	55314		NM_018342	ENSG00000164124	TMEM144	SLC35G7	transmembrane protein 144	protein-coding
176381	chr4	88609571	88610730	+	0	NA	intron (NM_001375479, intron 4 of 25)	MER41A|LTR|ERV1	17670	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
47455	chr12	3772071	3772530	+	0	NA	Intergenic	Intergenic	-19191	NM_001144958	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
344	chr1	1003401	1003800	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-3503	NM_001142467	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
54754	chr12	93979121	93979430	+	0	NA	Intergenic	L3|LINE|CR1	-35669	NR_135017	105369911		NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
197693	chr6	85642601	85644400	+	0	NA	promoter-TSS (NM_001159674)	promoter-TSS (NM_001159674)	-578	NM_001159673	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
182426	chr5	61472201	61472400	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	140042	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
7907	chr1	37471371	37472430	+	0	NA	intron (NR_038842, intron 1 of 2)	intron (NR_038842, intron 1 of 2)	2543	NR_038842	728431		NR_038842	ENSG00000233621	LITATS1	LINC01137|ZC3H12A-DT	lncRNA induced by TGF-beta and antagonizes TGF-beta signaling 1	ncRNA
13919	chr1	120081471	120081630	+	0	NA	Intergenic	Intergenic	-11847	NM_001200001	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
225605	chr9	36164701	36165230	+	0	NA	Intergenic	MIR3|SINE|MIR	-4423	NM_005893	881		NM_005893	ENSG00000185972	CCIN	BTBD20|KBTBD14	calicin	protein-coding
123375	chr19	53901871	53902180	+	0	NA	intron (NM_001316329, intron 14 of 18)	7SLRNA|srpRNA|srpRNA	-7253	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
138575	chr2	207737071	207737230	+	0	NA	intron (NM_001330218, intron 4 of 9)	AluY|SINE|Alu	-17657	NR_039934	100616361		NR_039934	ENSG00000284079	MIR4775	-	microRNA 4775	ncRNA
81005	chr16	4115801	4117330	+	0	NA	promoter-TSS (NM_001116)	promoter-TSS (NM_001116)	-123	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
237456	chrX	119729721	119730450	+	0	NA	Intergenic	Intergenic	-28503	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
221483	chr8	124488971	124489550	+	0	NA	TTS (NM_007218)	TTS (NM_007218)	14380	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
123840	chr19	55230451	55231150	+	0	NA	TTS (NR_106862)	TTS (NR_106862)	152	NR_106862	102465482		NR_106862	ENSG00000275519	MIR6804	hsa-mir-6804	microRNA 6804	ncRNA
144348	chr20	35000421	35000700	+	0	NA	exon (NM_020884, exon 39 of 45)	exon (NM_020884, exon 39 of 45)	-10088	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
165239	chr3	73020121	73022050	+	0	NA	intron (NM_001318025, intron 2 of 7)	intron (NM_001318025, intron 2 of 7)	24274	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
152907	chr22	22756021	22756280	+	0	NA	Intergenic	Intergenic	-66626	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
279	chr1	935351	936050	+	0	NA	intron (NM_001385641, intron 4 of 13)	CpG	9969	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
109656	chr19	1010101	1010700	+	0	NA	TTS (NM_138690)	TTS (NM_138690)	9981	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
78099	chr15	90264971	90266950	+	0	NA	promoter-TSS (NR_102428)	promoter-TSS (NR_102428)	-201	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
57413	chr12	121836271	121836650	+	0	NA	Intergenic	AluJb|SINE|Alu	22399	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
56216	chr12	111597171	111598400	+	0	NA	intron (NM_001310121, intron 1 of 25)	intron (NM_001310121, intron 1 of 25)	1530	NM_001372574	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
209150	chr7	75158571	75158730	+	0	NA	intron (NR_003187, intron 8 of 10)	AluSq2|SINE|Alu	13348	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
66359	chr14	61464401	61464600	+	0	NA	intron (NM_006255, intron 9 of 13)	L1PA8|LINE|L1	105694	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
1088	chr1	1954801	1955230	+	0	NA	intron (NM_001304360, intron 18 of 38)	CpG	-35736	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
142528	chr20	5000301	5002530	+	0	NA	promoter-TSS (NM_005116)	promoter-TSS (NM_005116)	95	NM_005116	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
62693	chr13	102772851	102774200	+	0	NA	intron (NM_138779, intron 1 of 5)	CpG	261	NR_104590	93081		NM_138779	ENSG00000151287	TEX30	C13orf27	testis expressed 30	protein-coding
44673	chr11	110479821	110480080	+	0	NA	Intergenic	Intergenic	50002	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
225955	chr9	41105551	41106080	+	0	NA	intron (NR_147036, intron 4 of 6)	LTR5A|LTR|ERVK	1997	NR_015361	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
187878	chr5	148732621	148732880	+	0	NA	Intergenic	HAL1b|LINE|L1	-78223	NM_000870	3360		NM_000870	ENSG00000164270	HTR4	5-HT4|5-HT4R	5-hydroxytryptamine receptor 4	protein-coding
87230	chr16	69580471	69580830	+	0	NA	intron (NM_138713, intron 2 of 14)	intron (NM_138713, intron 2 of 14)	14684	NM_173215	10725		NM_006599	ENSG00000102908	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T cells 5	protein-coding
96789	chr17	41809971	41810130	+	0	NA	intron (NM_006455, intron 3 of 7)	intron (NM_006455, intron 3 of 7)	1899	NM_006455	10609		NM_006455	ENSG00000141696	P3H4	LEPREL4|NO55|NOL55|SC65	prolyl 3-hydroxylase family member 4 (inactive)	protein-coding
18797	chr1	167618551	167619050	+	0	NA	Intergenic	L2c|LINE|L2	-11393	NM_001322923	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
228413	chr9	99226471	99227030	+	0	NA	intron (NM_006808, intron 2 of 3)	intron (NM_006808, intron 2 of 3)	4468	NM_006808	10952		NM_006808	ENSG00000106803	SEC61B	-	SEC61 translocon subunit beta	protein-coding
198308	chr6	100568221	100568480	+	0	NA	intron (NM_006828, intron 36 of 41)	AluSx1|SINE|Alu	-103429	NM_005068	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
30320	chr10	75407751	75408280	+	0	NA	non-coding (NR_024421, exon 2 of 2)	non-coding (NR_024421, exon 2 of 2)	-1142	NR_110304	101929234		NR_110304		LOC101929234	-	uncharacterized LOC101929234	ncRNA
234144	chrX	10087451	10087550	+	0	NA	intron (NM_015691, intron 5 of 22)	intron (NM_015691, intron 5 of 22)	-69445	NM_001256944	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
6517	chr1	28533671	28534030	+	0	NA	intron (NM_001048195, intron 5 of 10)	(T)n|Simple_repeat|Simple_repeat	15624	NM_001048194	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
24140	chr1	235843151	235844180	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	9395	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
207543	chr7	44835901	44836300	+	0	NA	intron (NM_201517, intron 2 of 3)	AluJb|SINE|Alu	11987	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
152657	chr22	21569721	21570300	+	0	NA	intron (NR_046082, intron 1 of 3)	L2c|LINE|L2	2296	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
195383	chr6	36724651	36724830	+	0	NA	intron (NM_001257357, intron 9 of 13)	intron (NM_001257357, intron 9 of 13)	26914	NM_001257357	401258		NM_207498	ENSG00000255587	RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
65088	chr14	39604001	39604250	+	0	NA	Intergenic	L2c|LINE|L2	-171625	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
151182	chr21	45073701	45075360	+	0	NA	promoter-TSS (NR_027672)	promoter-TSS (NR_027672)	-48	NR_027673	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
226494	chr9	71765521	71765980	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	2763	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
168791	chr3	152180201	152180630	+	0	NA	intron (NR_136178, intron 1 of 2)	L1PA2|LINE|L1	25014	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
79881	chr16	1536871	1537300	+	0	NA	intron (NM_024600, intron 1 of 2)	intron (NM_024600, intron 1 of 2)	3419	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
118049	chr19	34259471	34259850	+	0	NA	intron (NM_014686, intron 1 of 13)	(TTTG)n|Simple_repeat|Simple_repeat	5106	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
185462	chr5	131274521	131275280	+	0	NA	intron (NM_001038702, intron 1 of 4)	L2a|LINE|L2	10847	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
54274	chr12	89038801	89039200	+	0	NA	Intergenic	Intergenic	-19308	NR_038385	728084		NR_038385	ENSG00000246363	LINC02458	-	long intergenic non-protein coding RNA 2458	ncRNA
100625	chr17	63599671	63599830	+	0	NA	Intergenic	MIR|SINE|MIR	-1145	NM_016360	51204		NM_016360	ENSG00000136463	TACO1	CCDC44|MC4DN8	translational activator of cytochrome c oxidase I	protein-coding
176887	chr4	102784601	102785030	+	0	NA	intron (NR_125932, intron 4 of 4)	Charlie5|DNA|hAT-Charlie	7778	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
66157	chr14	60349871	60350250	+	0	NA	Intergenic	Intergenic	26864	NR_146481	101927729		NR_146481	ENSG00000258556	LINC02322	-	long intergenic non-protein coding RNA 2322	ncRNA
99936	chr17	57243071	57243750	+	0	NA	Intergenic	Intergenic	-12441	NM_001322250	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
127403	chr2	42086351	42086790	+	0	NA	Intergenic	Intergenic	38549	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
16373	chr1	154354571	154354930	+	0	NA	Intergenic	Intergenic	25952	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
202743	chr6	159014551	159015050	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-14598	NM_031924	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
121395	chr19	46937551	46937650	+	0	NA	intron (NM_004491, intron 3 of 6)	intron (NM_004491, intron 3 of 6)	76603	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
79188	chr16	320251	320550	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	32323	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
59718	chr13	29799071	29799230	+	0	NA	intron (NM_007106, intron 1 of 4)	MER20|DNA|hAT-Charlie	51467	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
158112	chr22	50031851	50032150	+	0	NA	exon (NM_001350317, exon 12 of 14)	exon (NM_001350317, exon 12 of 14)	-19235	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
118192	chr19	35126351	35126450	+	0	NA	exon (NM_139284, exon 8 of 9)	exon (NM_139284, exon 8 of 9)	3700	NR_106947	102466205		NR_106947	ENSG00000284065	MIR6887	hsa-mir-6887	microRNA 6887	ncRNA
224796	chr9	22237571	22237880	+	0	NA	Intergenic	Intergenic	-209099	NM_022160	63951		NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
147728	chr20	62389901	62390100	+	0	NA	3' UTR (NM_031215, exon 10 of 10)	3' UTR (NM_031215, exon 10 of 10)	2897	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
14748	chr1	146000651	146000750	+	0	NA	Intergenic	AluY|SINE|Alu	-4121	NM_006472	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
7281	chr1	32378551	32379100	+	0	NA	exon (NM_001143888, exon 6 of 11)	exon (NM_001143888, exon 6 of 11)	15616	NM_018045	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
10071	chr1	58776921	58777180	+	0	NA	Intergenic	Intergenic	6997	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
168460	chr3	143016321	143016750	+	0	NA	intron (NM_001080415, intron 5 of 27)	intron (NM_001080415, intron 5 of 27)	14965	NM_001320222	23350		NM_001080415	ENSG00000163714	U2SURP	SR140|fSAPa	U2 snRNP associated SURP domain containing	protein-coding
16425	chr1	154554871	154555880	+	0	NA	TTS (NR_046668)	TTS (NR_046668)	1766	NR_046668	100874097		NR_046668	ENSG00000229780	UBE2Q1-AS1	-	UBE2Q1 antisense RNA 1	ncRNA
79723	chr16	1322651	1322750	+	0	NA	intron (NM_194259, intron 7 of 7)	AluJo|SINE|Alu	-10945	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
233893	chrX	1595421	1595680	+	0	NA	promoter-TSS (NM_004043)	promoter-TSS (NM_004043)	95	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
73395	chr15	42606151	42606900	+	0	NA	intron (NM_020759, intron 3 of 32)	AluJb|SINE|Alu	30919	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
2824	chr1	11045351	11045650	+	0	NA	exon (NM_006610, exon 4 of 11)	exon (NM_006610, exon 4 of 11)	1739	NM_139208	10747		NM_006610	ENSG00000009724	MASP2	MAP-2|MAP19|MASP-2|MASP1P1|sMAP	MBL associated serine protease 2	protein-coding
23068	chr1	226637821	226638730	+	0	NA	intron (NM_002221, intron 6 of 7)	intron (NM_002221, intron 6 of 7)	36793	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
193745	chr6	31267601	31268700	+	0	NA	TTS (NM_002117).2	TTS (NM_002117).2	3942	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
192594	chr6	25990071	25990430	+	0	NA	3' UTR (NM_006355, exon 8 of 8)	3' UTR (NM_006355, exon 8 of 8)	27448	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
7612	chr1	35444051	35444350	+	0	NA	exon (NM_024874, exon 17 of 21)	exon (NM_024874, exon 17 of 21)	-78123	NR_046659	100861513		NR_046659	ENSG00000227409	ZMYM4-AS1	-	ZMYM4 antisense RNA 1	ncRNA
191467	chr6	11069001	11069280	+	0	NA	intron (NR_038964, intron 3 of 4)	intron (NR_038964, intron 3 of 4)	24449	NR_038962	100506409		NR_038962	ENSG00000230314	ELOVL2-AS1	-	ELOVL2 antisense RNA 1	ncRNA
29932	chr10	73370371	73370530	+	0	NA	Intergenic	AluJb|SINE|Alu	-11586	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
218942	chr8	60927301	60928200	+	0	NA	Intergenic	Intergenic	-16952	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
185575	chr5	131387071	131387780	+	0	NA	intron (NM_001038702, intron 3 of 4)	AluSx|SINE|Alu	123372	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
149625	chr21	33401701	33401980	+	0	NA	Intergenic	Intergenic	-1056	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
22755	chr1	224381621	224382630	+	0	NA	Intergenic	MIR|SINE|MIR	16186	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
73360	chr15	42396521	42396780	+	0	NA	intron (NM_173087, intron 7 of 20)	intron (NM_173087, intron 7 of 20)	-5740	NM_173088	825		NM_000070	ENSG00000092529	CAPN3	CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94	calpain 3	protein-coding
77646	chr15	85494101	85494700	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	113797	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
95504	chr17	36390301	36390500	+	0	NA	intron (NM_001291464, intron 7 of 13).4	intron (NM_001291464, intron 7 of 13).4	-1963	NM_001123392	729877		NM_001123392	ENSG00000274226	TBC1D3H	-	TBC1 domain family member 3H	protein-coding
208826	chr7	73676171	73676680	+	0	NA	Intergenic	AluSp|SINE|Alu	7028	NM_032317	84277		NM_032317	ENSG00000176410	DNAJC30	LHONAR|LHONAR1|MC1DN38|WBSCR18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding
211243	chr7	102654351	102654650	+	0	NA	intron (NM_001166339, intron 3 of 8).2	AluSx1|SINE|Alu	4175	NM_001031618	441273		NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1|SPDYB2L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
14302	chr1	143802501	143802730	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	9015	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
219278	chr8	67505721	67506380	+	0	NA	intron (NM_020361, intron 6 of 10)	Tigger12A|DNA|TcMar-Tigger	162216	NR_136224	102724708		NR_136223		ARFGEF1-DT	-	ARFGEF1 divergent transcript	ncRNA
225367	chr9	34929571	34929730	+	0	NA	Intergenic	Intergenic	-27837	NM_001347982	23349		NM_015297	ENSG00000122733	PHF24	GINIP	PHD finger protein 24	protein-coding
202644	chr6	158766471	158767600	+	0	NA	exon (NM_001111077, exon 14 of 14)	exon (NM_001111077, exon 14 of 14)	-2282	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
11946	chr1	93849771	93849930	+	0	NA	Intergenic	AluSx|SINE|Alu	-2631	NM_001261408	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
211327	chr7	104329251	104329350	+	0	NA	intron (NM_199000, intron 1 of 2)	CpG	644	NM_199000	375612		NM_199000	ENSG00000187416	LHFPL3	LHFPL4	LHFPL tetraspan subfamily member 3	protein-coding
14971	chr1	147964571	147965030	+	0	NA	intron (NM_016334, intron 7 of 13)	intron (NM_016334, intron 7 of 13)	36380	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
136053	chr2	172674071	172674300	+	0	NA	Intergenic	Intergenic	-61660	NM_001375872	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
167038	chr3	126530151	126530600	+	0	NA	intron (NR_130715, intron 4 of 5)	intron (NR_130715, intron 4 of 5)	6220	NM_152889	166012		NM_152889	ENSG00000180767	CHST13	C4ST3	carbohydrate sulfotransferase 13	protein-coding
83952	chr16	29145351	29145650	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	70658	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
197288	chr6	71190871	71191030	+	0	NA	Intergenic	HAL1M8|LINE|L1	-97861	NM_001324266	79627		NM_024576	ENSG00000119900	OGFRL1	dJ331H24.1	opioid growth factor receptor like 1	protein-coding
161945	chr3	46205301	46205580	+	0	NA	intron (NM_001295, intron 1 of 1)	intron (NM_001295, intron 1 of 1)	2873	NM_001295	1230		NM_001295	ENSG00000163823	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	C-C motif chemokine receptor 1	protein-coding
235917	chrX	53085401	53086150	+	0	NA	exon (NM_022117, exon 6 of 7)	exon (NM_022117, exon 6 of 7)	3408	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
105919	chr18	3454621	3455010	+	0	NA	intron (NM_173211, intron 1 of 2)	intron (NM_173211, intron 1 of 2)	1041	NM_173211	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
99307	chr17	49813921	49814180	+	0	NA	intron (NM_001199155, intron 6 of 13)	AluSz|SINE|Alu	25369	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
30065	chr10	73867021	73867430	+	0	NA	intron (NR_160045, intron 1 of 17)	intron (NR_160045, intron 1 of 17)	7330	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
228295	chr9	98101221	98102730	+	0	NA	intron (NM_014788, intron 2 of 5)	AluSx1|SINE|Alu	17247	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
55590	chr12	106582271	106582950	+	0	NA	promoter-TSS (NM_213594)	promoter-TSS (NM_213594)	-394	NM_213594	5992		NM_002920	ENSG00000111783	RFX4	NYD-SP10	regulatory factor X4	protein-coding
206357	chr7	30477601	30479060	+	0	NA	intron (NM_001354849, intron 1 of 12)	MER5B|DNA|hAT-Charlie	454	NM_006092	10392		NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1|hNod1	nucleotide binding oligomerization domain containing 1	protein-coding
136359	chr2	176086021	176086350	+	0	NA	Intergenic	Intergenic	-2223	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
3903	chr1	17186351	17186850	+	0	NA	Intergenic	Intergenic	-3189	NR_148993	400743		NR_148993	ENSG00000204362	LINC02783	-	long intergenic non-protein coding RNA 2783	ncRNA
33144	chr10	112383351	112384200	+	0	NA	intron (NM_016234, intron 1 of 20)	intron (NM_016234, intron 1 of 20)	7577	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
110173	chr19	1657671	1658230	+	0	NA	Intergenic	Intergenic	-5335	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
167974	chr3	136703201	136703400	+	0	NA	intron (NM_005862, intron 1 of 33)	L1MB5|LINE|L1	49078	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
153086	chr22	23402021	23403050	+	0	NA	promoter-TSS (NR_003950)	promoter-TSS (NR_003950)	77	NR_003950	150244		NM_152509	ENSG00000290920	ZDHHC8BP	ZDHHC8P|ZDHHC8P1	ZDHHC8B, pseudogene	pseudo
216748	chr8	22461901	22462850	+	0	NA	intron (NM_005605, intron 1 of 13)	intron (NM_005605, intron 1 of 13)	21297	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
64250	chr14	23162071	23162230	+	0	NA	intron (NM_012244, intron 3 of 10)	intron (NM_012244, intron 3 of 10)	-6692	NM_001267036	23428		NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
78329	chr15	90990171	90990950	+	0	NA	intron (NM_199413, intron 1 of 13)	L1MB8|LINE|L1	3975	NM_199413	9055		NM_003981	ENSG00000198901	PRC1	ASE1|MAP65	protein regulator of cytokinesis 1	protein-coding
218024	chr8	38734671	38734830	+	0	NA	intron (NR_148047, intron 1 of 1)	intron (NR_148047, intron 1 of 1)	6168	NM_001352778	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
165167	chr3	72344901	72345100	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	101623	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
57849	chr12	123267471	123267650	+	0	NA	intron (NR_073007, intron 1 of 3)	intron (NR_073007, intron 1 of 3)	694	NM_001270434	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
130121	chr2	74556871	74557430	+	0	NA	TTS (NM_138804)	TTS (NM_138804)	2990	NM_001381	1796		NM_001381	ENSG00000115325	DOK1	P62DOK|pp62	docking protein 1	protein-coding
155775	chr22	39240601	39241300	+	0	NA	promoter-TSS (NM_033016)	promoter-TSS (NM_033016)	-41	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
69832	chr14	99231301	99231700	+	0	NA	exon (NM_138576, exon 3 of 4)	exon (NM_138576, exon 3 of 4)	40697	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
30090	chr10	73916951	73917330	+	0	NA	3' UTR (NM_001319191, exon 10 of 10)	3' UTR (NM_001319191, exon 10 of 10)	5637	NR_160937	414236		NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 putative open reading frame 55	ncRNA
217158	chr8	26266851	26267150	+	0	NA	Intergenic	Intergenic	-24508	NM_002717	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
101071	chr17	64846821	64847230	+	0	NA	Intergenic	Intergenic	-9841	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
211570	chr7	105675651	105676400	+	0	NA	intron (NM_001385596, intron 3 of 11)	intron (NM_001385596, intron 3 of 11)	3130	NM_001318229	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
55565	chr12	106215671	106215830	+	0	NA	Intergenic	Intergenic	32270	NM_006825	10970		NM_006825	ENSG00000136026	CKAP4	CLIMP-63|CLIMP63|ERGIC-63|p63	cytoskeleton associated protein 4	protein-coding
92448	chr17	8471401	8471700	+	0	NA	Intergenic	Intergenic	35666	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
76708	chr15	75842621	75845750	+	0	NA	5' UTR (NM_001145335, exon 1 of 13)	5' UTR (NM_001145335, exon 1 of 13)	141	NM_001145335	92912		NM_173469	ENSG00000140367	UBE2Q2	-	ubiquitin conjugating enzyme E2 Q2	protein-coding
15297	chr1	149844111	149844780	+	0	NA	Intergenic	Intergenic	-1694	NM_001040874	723790		NM_001040874	ENSG00000288859	H2AC19	H2A/R|H2AC18|HIST2H2AA4	H2A clustered histone 19	protein-coding
27465	chr10	32007521	32008650	+	0	NA	TTS (NM_004521)	TTS (NM_004521)	48340	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
152878	chr22	22593951	22594500	+	0	NA	Intergenic	Intergenic	-34864	NM_206955	23532		NM_006115	ENSG00000185686	PRAME	CT130|MAPE|OIP-4|OIP4	PRAME nuclear receptor transcriptional regulator	protein-coding
119937	chr19	41862521	41863950	+	0	NA	intron (NM_001321485, intron 3 of 5)	AluJo|SINE|Alu	2831	NM_001321483	6223		NM_001022	ENSG00000105372	RPS19	DBA|DBA1|LOH19CR1|S19|eS19	ribosomal protein S19	protein-coding
143206	chr20	24956161	24956630	+	0	NA	intron (NM_003650, intron 1 of 3)	intron (NM_003650, intron 1 of 3)	7126	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
187657	chr5	143120751	143121370	+	0	NA	exon (NM_001135608, exon 18 of 23)	exon (NM_001135608, exon 18 of 23)	-71440	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
118227	chr19	35194151	35194250	+	0	NA	Intergenic	LTR31|LTR|ERV1	34525	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
68594	chr14	89510051	89510900	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	-65741	NR_024620	29018		NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
34965	chr11	494851	495550	+	0	NA	intron (NM_203389, intron 8 of 9).2	intron (NM_203389, intron 8 of 9).2	11568	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
43126	chr11	75248501	75249090	+	0	NA	Intergenic	Intergenic	8021	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
93487	chr17	18955321	18956230	+	0	NA	intron (NM_152351, intron 1 of 14)	intron (NM_152351, intron 1 of 14)	3610	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
118343	chr19	35632721	35633200	+	0	NA	exon (NM_024321, exon 5 of 10)	exon (NM_024321, exon 5 of 10)	3924	NM_024321	79171		NM_024321	ENSG00000126254	RBM42	-	RNA binding motif protein 42	protein-coding
205012	chr7	6482501	6483400	+	0	NA	intron (NM_006854, intron 1 of 4)	AluJb|SINE|Alu	1202	NM_001100603	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
102629	chr17	76005151	76006250	+	0	NA	non-coding (NR_037709, exon 10 of 10)	non-coding (NR_037709, exon 10 of 10)	4794	NM_001258	1018		NM_001258	ENSG00000250506	CDK3	-	cyclin dependent kinase 3	protein-coding
232627	chr9	136450651	136450950	+	0	NA	intron (NM_014866, intron 23 of 31)	L1M5|LINE|L1	-10955	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
27490	chr10	32207371	32207780	+	0	NA	Intergenic	Intergenic	139583	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
60618	chr13	42270471	42270630	+	0	NA	Intergenic	LTR19A|LTR|ERV1	-1602	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
90899	chr17	2418051	2418350	+	0	NA	3' UTR (NM_024086, exon 10 of 10)	3' UTR (NM_024086, exon 10 of 10)	-2764	NR_028335	284009		NM_001025459		LOC284009	-	uncharacterized LOC284009	ncRNA
145592	chr20	44534021	44534400	+	0	NA	intron (NM_007066, intron 1 of 3)	intron (NM_007066, intron 1 of 3)	2335	NM_007066	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
191838	chr6	15021501	15022130	+	0	NA	Intergenic	LTR85b|LTR|Gypsy?	-224254	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
187907	chr5	148839101	148839300	+	0	NA	Intergenic	AluJr|SINE|Alu	12589	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
19193	chr1	172352471	172352980	+	0	NA	intron (NM_015569, intron 17 of 20)	MamGypsy2-I|LTR|Gypsy	-67960	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
176506	chr4	94339171	94339330	+	0	NA	intron (NM_014485, intron 1 of 5)	intron (NM_014485, intron 1 of 5)	3586	NM_014485	27306		NM_014485	ENSG00000163106	HPGDS	GSTS|GSTS1|GSTS1-1|PGD2|PGDS	hematopoietic prostaglandin D synthase	protein-coding
76342	chr15	74431201	74431400	+	0	NA	intron (NM_001146029, intron 1 of 12)	intron (NM_001146029, intron 1 of 12)	2404	NM_001146030	8482		NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|PFIC11|SEMAK1|SEMAL	semaphorin 7A (JohnMiltonHagen blood group)	protein-coding
34990	chr11	516671	516830	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-9508	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
189459	chr5	173033851	173034150	+	0	NA	intron (NM_003945, intron 3 of 3)	intron (NM_003945, intron 3 of 3)	13274	NR_002988	677841		NR_002988	ENSG00000212402	SNORA74B	U19-2	small nucleolar RNA, H/ACA box 74B	snoRNA
157426	chr22	45165371	45165530	+	0	NA	intron (NM_153645, intron 1 of 8)	AluJr|SINE|Alu	779	NM_153645	10762		NM_007172	ENSG00000093000	NUP50	NPAP60|NPAP60L	nucleoporin 50	protein-coding
1679	chr1	3992101	3992380	+	0	NA	Intergenic	Intergenic	-43260	NR_147024	105376672		NR_147024	ENSG00000226374	LINC01345	-	long intergenic non-protein coding RNA 1345	ncRNA
224768	chr9	21993571	21994700	+	0	NA	promoter-TSS (NR_003529)	promoter-TSS (NR_003529)	257	NM_058195	1029		NM_000077	ENSG00000147889	CDKN2A	ARF|CAI2|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
94875	chr17	31525101	31526030	+	0	NA	intron (NM_001346748, intron 8 of 12)	intron (NM_001346748, intron 8 of 12)	-9318	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
110645	chr19	2234651	2234750	+	0	NA	promoter-TSS (NR_031596)	promoter-TSS (NR_031596)	-551	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
165006	chr3	71374571	71374930	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-69979	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
14556	chr1	144917721	144918400	+	0	NA	non-coding (NR_104189, exon 4 of 4).2	non-coding (NR_104189, exon 4 of 4).2	-176236	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
27291	chr10	30398971	30399350	+	0	NA	Intergenic	L1M1|LINE|L1	-27253	NR_120609	729668		NR_003524		GOLGA2P6	-	GOLGA2 pseudogene 6	pseudo
32700	chr10	104028171	104028430	+	0	NA	3' UTR (NM_001304743, exon 18 of 18)	3' UTR (NM_001304743, exon 18 of 18)	19886	NR_030760	100126326		NR_030760	ENSG00000283788	MIR936	MIRN936|hsa-mir-936	microRNA 936	ncRNA
170943	chr3	194330321	194331150	+	0	NA	Intergenic	Intergenic	-17931	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
238027	chrX	135099871	135100100	+	0	NA	Intergenic	AluJo|SINE|Alu	-1273	NM_001348255	644596		NM_001348255	ENSG00000196972	SMIM10L2B	LINC00086|LINC00087|NCRNA00086|NCRNA00087|SMIM10L2A	small integral membrane protein 10 like 2B	protein-coding
108029	chr18	58896451	58896550	+	0	NA	intron (NM_001375912, intron 2 of 9)	intron (NM_001375912, intron 2 of 9)	31623	NM_001353538	55205		NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
93764	chr17	20042451	20042550	+	0	NA	intron (NM_001243439, intron 1 of 14)	L1MDa|LINE|L1	33141	NM_001243439	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
57919	chr12	123512801	123513200	+	0	NA	intron (NM_178314, intron 2 of 6)	(TG)n|Simple_repeat|Simple_repeat	7226	NM_001319244	353116		NM_178314	ENSG00000188026	RILPL1	GOSPEL|OPDM4|RLP1	Rab interacting lysosomal protein like 1	protein-coding
97566	chr17	44089251	44089550	+	0	NA	intron (NM_001382393, intron 11 of 26)	AluSz|SINE|Alu	18489	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
225611	chr9	36190321	36191780	+	0	NA	non-coding (NR_132349, exon 1 of 4)	non-coding (NR_132349, exon 1 of 4)	129	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
6821	chr1	30976071	30976500	+	0	NA	intron (NM_014676, intron 9 of 21)	intron (NM_014676, intron 9 of 21)	-8048	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
166861	chr3	123449521	123450380	+	0	NA	promoter-TSS (NM_001378259)	promoter-TSS (NM_001378259)	-860	NM_183357	111		NM_183357	ENSG00000173175	ADCY5	AC5|DSKOD|FDFM	adenylate cyclase 5	protein-coding
55462	chr12	104671491	104672500	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	80362	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
128568	chr2	60899271	60899430	+	0	NA	intron (NM_001291746, intron 3 of 9)	AluJb|SINE|Alu	17776	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133368	chr2	117832871	117833950	+	0	NA	promoter-TSS (NR_158150)	promoter-TSS (NR_158150)	-321	NR_158150	107985939		NR_158150		LOC107985939	-	uncharacterized LOC107985939	ncRNA
147357	chr20	58318751	58318870	+	0	NA	intron (NM_020673, intron 2 of 6)	MIR|SINE|MIR	9095	NM_020673	57403		NM_020673	ENSG00000124209	RAB22A	-	RAB22A, member RAS oncogene family	protein-coding
13413	chr1	113978651	113980230	+	0	NA	promoter-TSS (NM_001286352)	promoter-TSS (NM_001286352)	-34	NM_001286352	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
232771	chr9	136679701	136680100	+	0	NA	intron (NM_006412, intron 1 of 5)	intron (NM_006412, intron 1 of 5)	7557	NM_001012727	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
85022	chr16	31697071	31697430	+	0	NA	Intergenic	Intergenic	-3363	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
202258	chr6	156976171	156976730	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-59977	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
56398	chr12	113206771	113207050	+	0	NA	intron (NM_001330452, intron 2 of 4)	AluJo|SINE|Alu	14184	NM_001330452	115811		NM_138451	ENSG00000166578	IQCD	4933433C09Rik|CFAP84|DRC10	IQ motif containing D	protein-coding
215914	chr8	8201171	8201350	+	0	NA	intron (NR_147089, intron 2 of 3)	HERVK-int|LTR|ERVK	26243	NR_147089	105379219		NR_147089		FAM85B	lncRNA-HEIM	family with sequence similarity 85 member B	ncRNA
187582	chr5	142820001	142820200	+	0	NA	intron (NM_001349547, intron 1 of 21)	MER5A|DNA|hAT-Charlie	48810	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
212723	chr7	129824121	129824430	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-49261	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
38935	chr11	47504821	47505130	+	0	NA	intron (NM_001376440, intron 1 of 14)	intron (NM_001376440, intron 1 of 14)	-10454	NM_198700	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
155144	chr22	37662301	37662500	+	0	NA	intron (NM_020315, intron 1 of 1)	intron (NM_020315, intron 1 of 1)	3677	NM_020315	57026		NM_020315	ENSG00000241360	PDXP	CIN|PLP|dJ37E16.5	pyridoxal phosphatase	protein-coding
208922	chr7	74065251	74065430	+	0	NA	intron (NM_001278918, intron 25 of 27)	AluSx1|SINE|Alu	-18464	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
222921	chr8	142943601	142943800	+	0	NA	Intergenic	Intergenic	-25857	NM_000498	1585		NM_000498	ENSG00000179142	CYP11B2	ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo	cytochrome P450 family 11 subfamily B member 2	protein-coding
64451	chr14	24234471	24235380	+	0	NA	intron (NM_001351024, intron 4 of 10).2	MamRTE1|LINE|RTE-BovB	1996	NM_001351026	51292		NM_016576	ENSG00000100938	GMPR2	GMPR 2	guanosine monophosphate reductase 2	protein-coding
209232	chr7	75741421	75741930	+	0	NA	Intergenic	AluSz|SINE|Alu	-2734	NM_005338	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
37396	chr11	17164971	17165130	+	0	NA	intron (NM_001321380, intron 1 of 31)	intron (NM_001321380, intron 1 of 31)	42936	NM_002645	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
166955	chr3	125349601	125350080	+	0	NA	intron (NM_001348427, intron 1 of 9)	AluJo|SINE|Alu	7440	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
188159	chr5	150441201	150441800	+	0	NA	Intergenic	AluSx1|SINE|Alu	8239	NM_005617	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
54122	chr12	76472751	76473100	+	0	NA	intron (NM_001319653, intron 2 of 23)	LTR13|LTR|ERVK	-49640	NM_001319655	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
25354	chr10	6375171	6375400	+	0	NA	Intergenic	L1HS|LINE|L1	24969	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
38457	chr11	45383301	45384130	+	0	NA	intron (NR_122071, intron 3 of 4)	intron (NR_122071, intron 3 of 4)	12318	NR_122071	399886		NR_122071	ENSG00000255267	LINC02687	-	long intergenic non-protein coding RNA 2687	ncRNA
193402	chr6	30418201	30418400	+	0	NA	Intergenic	Intergenic	-71209	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
27562	chr10	32351821	32352080	+	0	NA	intron (NR_104163, intron 1 of 1)	AluSx|SINE|Alu	4586	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
229360	chr9	120935721	120936930	+	0	NA	Intergenic	Intergenic	-7152	NM_001190945	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
212624	chr7	129298271	129298580	+	0	NA	intron (NM_001130720, intron 1 of 16)	intron (NM_001130720, intron 1 of 16)	-69955	NM_001130723	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
226239	chr9	66643651	66643750	+	0	NA	Intergenic	Intergenic	-257025	NM_033160	26149		NM_033160	ENSG00000274349	ZNF658	-	zinc finger protein 658	protein-coding
201347	chr6	144581851	144582230	+	0	NA	intron (NM_007124, intron 50 of 73)	intron (NM_007124, intron 50 of 73)	-1108	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
131349	chr2	96163401	96164300	+	0	NA	Intergenic	Intergenic	-18410	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
83537	chr16	27605601	27605800	+	0	NA	intron (NM_015202, intron 2 of 27)	intron (NM_015202, intron 2 of 27)	55556	NM_015202	23247		NM_015202	ENSG00000047578	KATNIP	JBTS26|KIAA0556	katanin interacting protein	protein-coding
211758	chr7	107201751	107202480	+	0	NA	3' UTR (NM_012257, exon 11 of 11)	3' UTR (NM_012257, exon 11 of 11)	33112	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
166605	chr3	119292651	119292950	+	0	NA	Intergenic	Intergenic	-1583	NM_020754	57514		NM_020754	ENSG00000031081	ARHGAP31	AOS|AOS1|CDGAP	Rho GTPase activating protein 31	protein-coding
33645	chr10	119691801	119692000	+	0	NA	Intergenic	Intergenic	-34147	NM_001243195	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
138224	chr2	202760201	202760400	+	0	NA	intron (NM_173511, intron 7 of 7)	L1M3f|LINE|L1	68934	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
171590	chr3	197032901	197033850	+	0	NA	Intergenic	Intergenic	-3558	NM_005929	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
179266	chr4	176196501	176196700	+	0	NA	Intergenic	Intergenic	-1015	NM_144644	132851		NM_144644	ENSG00000150628	SPATA4	CFAP178|FAP178|SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
121672	chr19	47502671	47503030	+	0	NA	intron (NR_038456, intron 2 of 11)	MIR|SINE|MIR	12213	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
139934	chr2	230786051	230786830	+	0	NA	intron (NM_016289, intron 2 of 8)	L1MB7|LINE|L1	72892	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
201223	chr6	143556601	143556880	+	0	NA	intron (NR_027113, intron 2 of 2)	HSATI|Satellite|Satellite	5311	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
218846	chr8	59828451	59828550	+	0	NA	Intergenic	L1MC1|LINE|L1	452900	NM_001321837	767		NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
169160	chr3	156602221	156602680	+	0	NA	Intergenic	Intergenic	-47250	NM_001308197	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
7294	chr1	32396171	32396330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1809	NM_001143889	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
119492	chr19	40461921	40462350	+	0	NA	intron (NM_000713, intron 1 of 4)	MIRb|SINE|MIR	3610	NM_000713	645		NM_000713	ENSG00000090013	BLVRB	BVRB|FLR|HEL-S-10|SDR43U1	biliverdin reductase B	protein-coding
159412	chr3	13487251	13487800	+	0	NA	intron (NM_001330636, intron 3 of 6)	intron (NM_001330636, intron 3 of 6)	7219	NM_001136041	79885		NM_024827	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
173821	chr4	18042771	18043030	+	0	NA	Intergenic	Intergenic	-21025	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
196183	chr6	42637171	42637730	+	0	NA	intron (NM_001363705, intron 15 of 46)	MIR|SINE|MIR	73421	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
37158	chr11	13718471	13718830	+	0	NA	intron (NM_032228, intron 9 of 11)	MLT1G|LTR|ERVL-MaLR	49982	NM_032228	84188		NM_032228	ENSG00000197601	FAR1	CSPSD|MLSTD2|PFCRD|SDR10E1	fatty acyl-CoA reductase 1	protein-coding
28374	chr10	47277551	47278300	+	0	NA	Intergenic	Intergenic	-22272	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
35477	chr11	1487801	1488200	+	0	NA	Intergenic	Intergenic	-1221	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
216253	chr8	12427571	12427930	+	0	NA	exon (NM_001137610, exon 7 of 8)	exon (NM_001137610, exon 7 of 8)	8548	NR_148878	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
8716	chr1	42379851	42379950	+	0	NA	promoter-TSS (NM_173642)	promoter-TSS (NM_173642)	-892	NM_173642	284716		NM_173642	ENSG00000177181	RIMKLA	FAM80A|NAAGS|NAAGS-II|NAAGS2	ribosomal modification protein rimK like family member A	protein-coding
16522	chr1	154934851	154935450	+	0	NA	intron (NM_001323012, intron 1 of 4)	MIR|SINE|MIR	1569	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
52640	chr12	56280051	56280350	+	0	NA	intron (NM_004077, intron 6 of 10)	AluSx3|SINE|Alu	12874	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
139078	chr2	218867171	218867530	+	0	NA	intron (NM_006522, intron 1 of 3)	intron (NM_006522, intron 1 of 3)	7545	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
175181	chr4	56389571	56389730	+	0	NA	Intergenic	Intergenic	-2142	NM_001286671	132949		NM_181806	ENSG00000157426	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
189325	chr5	172160951	172161200	+	0	NA	intron (NM_005990, intron 1 of 18)	L2b|LINE|L2	27149	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
37851	chr11	33724271	33724630	+	0	NA	intron (NM_000611, intron 1 of 3)	intron (NM_000611, intron 1 of 3)	-1498	NM_001127227	966		NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
206728	chr7	36606721	36607180	+	0	NA	intron (NM_001177506, intron 11 of 21)	intron (NM_001177506, intron 11 of 21)	-6830	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
142153	chr20	2806951	2807100	+	0	NA	Intergenic	AluYf1|SINE|Alu	-6398	NM_001184699	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
193174	chr6	29715551	29715650	+	0	NA	Intergenic	MADE1|DNA|TcMar-Mariner	-7740	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
208044	chr7	55966871	55968080	+	0	NA	intron (NM_001202469, intron 1 of 7)	AluJr|SINE|Alu	2890	NM_001202469	2631		NM_001483	ENSG00000146729	NIPSNAP2	GBAS	nipsnap homolog 2	protein-coding
131043	chr2	88252721	88252980	+	0	NA	Intergenic	Intergenic	82504	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
127291	chr2	38740201	38742000	+	0	NA	Intergenic	Intergenic	10261	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
20648	chr1	200038971	200039950	+	0	NA	intron (NM_003822, intron 1 of 6)	CpG	-3365	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
179298	chr4	177329771	177329930	+	0	NA	intron (NM_018248, intron 2 of 9)	L1MEf|LINE|L1	19976	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
29557	chr10	71390571	71390730	+	0	NA	Intergenic	Intergenic	-6270	NM_022124	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
28	chr1	136521	136880	+	0	NA	non-coding (NR_039983, exon 3 of 3)	non-coding (NR_039983, exon 3 of 3)	3866	NR_039983	729737		NR_039983		LOC729737	-	uncharacterized LOC729737	ncRNA
36692	chr11	8690401	8690980	+	0	NA	TTS (NM_000990)	TTS (NM_000990)	5251	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
231324	chr9	130127651	130128700	+	0	NA	intron (NM_001136557, intron 18 of 19)	intron (NM_001136557, intron 18 of 19)	16044	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
112649	chr19	6856851	6857150	+	0	NA	intron (NM_005428, intron 26 of 26)	L2a|LINE|L2	-30579	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
74284	chr15	57704451	57704750	+	0	NA	intron (NR_104371, intron 13 of 16)	intron (NR_104371, intron 13 of 16)	-1921	NM_001018102	81488		NM_015532	ENSG00000255529	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	RNA polymerase II subunit M	protein-coding
11816	chr1	92837551	92838230	+	0	NA	TTS (NR_000006)	TTS (NR_000006)	601	NR_000006	6083		NR_000006	ENSG00000206680	SNORD21	RNU21|U21	small nucleolar RNA, C/D box 21	snoRNA
53705	chr12	68565271	68565700	+	0	NA	Intergenic	Intergenic	-45414	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
108323	chr18	63788471	63789030	+	0	NA	intron (NM_001261831, intron 2 of 6)	Tigger3b|DNA|TcMar-Tigger	10973	NM_001261830	8710		NM_003784	ENSG00000166396	SERPINB7	MEGSIN|PPKN|TP55	serpin family B member 7	protein-coding
157782	chr22	46759901	46760100	+	0	NA	Intergenic	AluJo|SINE|Alu	-2617	NM_001284303	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
108247	chr18	63223671	63224030	+	0	NA	intron (NM_000633, intron 2 of 2)	HAL1|LINE|L1	95919	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
59871	chr13	30637001	30637200	+	0	NA	intron (NM_001321534, intron 1 of 5)	AluJr|SINE|Alu	2885	NM_001321534	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
238249	chrX	144783851	144783950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-463603	NM_001009614	494118		NM_001009614	ENSG00000203923	SPANXN1	CT11.6	SPANX family member N1	protein-coding
223070	chr8	143397921	143398180	+	0	NA	Intergenic	Intergenic	-19629	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
12381	chr1	101262521	101263350	+	0	NA	Intergenic	Intergenic	25916	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
123918	chr19	55357621	55357880	+	0	NA	intron (NM_001145402, intron 9 of 10)	L2a|LINE|L2	-3031	NM_001369799	125965		NM_144613	ENSG00000160471	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit 6B2	protein-coding
141128	chr2	239118621	239119400	+	0	NA	intron (NM_006037, intron 12 of 26)	intron (NM_006037, intron 12 of 26)	-33084	NR_039643	100616493		NR_039643	ENSG00000264810	MIR4441	-	microRNA 4441	ncRNA
136425	chr2	176454771	176455250	+	0	NA	Intergenic	Intergenic	146042	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
1931	chr1	6488251	6488850	+	0	NA	intron (NM_198681, intron 2 of 21)	intron (NM_198681, intron 2 of 21)	2030	NM_001265594	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
18549	chr1	162560871	162562380	+	0	NA	promoter-TSS (NM_001324113)	promoter-TSS (NM_001324113)	119	NM_003115	6675		NM_003115	ENSG00000117143	UAP1	AGX|AGX1|AGX2|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
56156	chr12	111396751	111397680	+	0	NA	Intergenic	CpG	-8708	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
237820	chrX	129978421	129978880	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-2329	NM_001184772	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
8683	chr1	41919601	41921480	+	0	NA	intron (NR_038261, intron 1 of 3)	intron (NR_038261, intron 1 of 3)	-1618	NM_001127714	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
133396	chr2	118309821	118311330	+	0	NA	Intergenic	Intergenic	-124189	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
115930	chr19	16624351	16625330	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	3364	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
128596	chr2	60954101	60954850	+	0	NA	intron (NM_001322127, intron 11 of 16)	intron (NM_001322127, intron 11 of 16)	62737	NM_001322124	150962		NM_144709	ENSG00000162927	PUS10	CCDC139|DOBI|Hup10	pseudouridine synthase 10	protein-coding
5434	chr1	25568771	25569430	+	0	NA	TTS (NM_015627)	TTS (NM_015627)	25494	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
25633	chr10	8102851	8103480	+	0	NA	Intergenic	Intergenic	48477	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
59178	chr13	22018851	22019200	+	0	NA	Intergenic	Tigger4|DNA|TcMar-Tigger	-140865	NR_047040	100874182		NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
182850	chr5	69492521	69493080	+	0	NA	promoter-TSS (NM_001205254)	promoter-TSS (NM_001205254)	10	NM_001205254	100506658		NM_002538	ENSG00000197822	OCLN	BLCPMG|PPP1R115|PTORCH1	occludin	protein-coding
5908	chr1	26831621	26832330	+	0	NA	intron (NM_032283, intron 1 of 7)	L2b|LINE|L2	5287	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
37026	chr11	12108771	12109080	+	0	NA	Intergenic	Intergenic	-1651	NM_001282668	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
218879	chr8	60542421	60542680	+	0	NA	intron (NM_001242644, intron 1 of 6)	intron (NM_001242644, intron 1 of 6)	25563	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
220388	chr8	100237201	100237600	+	0	NA	intron (NM_001374321, intron 16 of 18)	intron (NM_001374321, intron 16 of 18)	64793	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
152582	chr22	21155951	21157080	+	0	NA	Intergenic	L1M3|LINE|L1	-11350	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
234775	chrX	23902521	23902800	+	0	NA	intron (NM_024122, intron 1 of 8)	intron (NM_024122, intron 1 of 8)	5278	NM_024122	79135		NM_024122	ENSG00000184831	APOO	FAM121B|MIC26|MICOS26|Mic23|My025	apolipoprotein O	protein-coding
70311	chr14	101818401	101818900	+	0	NA	intron (NM_178587, intron 1 of 11)	intron (NM_178587, intron 1 of 11)	8787	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
143039	chr20	21175551	21175650	+	0	NA	intron (NM_001276389, intron 4 of 10)	L1MCb|LINE|L1	42689	NR_109956	101929591		NR_109956	ENSG00000232712	KIZ-AS1	-	KIZ antisense RNA 1	ncRNA
66217	chr14	61318351	61319050	+	0	NA	Intergenic	L2b|LINE|L2	-2743	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
226167	chr9	64016471	64017250	+	0	NA	promoter-TSS (NR_033856)	promoter-TSS (NR_033856)	-90	NR_033856	644316		NR_033856	ENSG00000291012	FLJ43315	-	asparagine synthetase pseudogene	pseudo
76013	chr15	71730651	71730750	+	0	NA	intron (NM_024817, intron 8 of 16)	intron (NM_024817, intron 8 of 16)	-39161	NR_120346	101929173		NR_120346		THSD4-AS2	-	THSD4 antisense RNA 2	ncRNA
87431	chr16	70695371	70696080	+	0	NA	intron (NM_001351157, intron 15 of 17)	intron (NM_001351157, intron 15 of 17)	-9672	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
90422	chr17	1346571	1346980	+	0	NA	intron (NR_024058, intron 6 of 6)	AluSc8|SINE|Alu	53447	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
131376	chr2	96241771	96242730	+	0	NA	non-coding (NR_046322, exon 4 of 4)	non-coding (NR_046322, exon 4 of 4)	23747	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
221090	chr8	117474371	117474530	+	0	NA	Intergenic	Intergenic	-46263	NM_001282986	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
6571	chr1	28745521	28746080	+	0	NA	intron (NM_016258, intron 4 of 4)	AluJo|SINE|Alu	8860	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
154917	chr22	37201971	37202830	+	0	NA	Intergenic	Intergenic	-2977	NM_001365878	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
114997	chr19	14051971	14052530	+	0	NA	exon (NM_004843, exon 14 of 14)	exon (NM_004843, exon 14 of 14)	5388	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
158057	chr22	49950271	49951200	+	0	NA	Intergenic	Intergenic	-10037	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
184648	chr5	107486371	107487330	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	184087	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
100740	chr17	63929571	63929930	+	0	NA	intron (NM_021602, intron 3 of 4)	intron (NM_021602, intron 3 of 4)	2581	NM_021602	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
139162	chr2	219175001	219175200	+	0	NA	exon (NM_015680, exon 4 of 8)	exon (NM_015680, exon 4 of 8)	1825	NR_135629	27013		NM_015680	ENSG00000115649	CNPPD1	C2orf24|CGI-57	cyclin Pas1/PHO80 domain containing 1	protein-coding
176835	chr4	102572501	102572900	+	0	NA	intron (NM_001382625, intron 7 of 24)	L1PREC2|LINE|L1	-70214	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
52011	chr12	53978801	53979180	+	0	NA	Intergenic	Intergenic	-4034	NR_047517	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
159741	chr3	15923671	15923930	+	0	NA	Intergenic	Intergenic	50029	NR_030289	693148		NR_030289	ENSG00000207815	MIR563	MIRN563|hsa-mir-563	microRNA 563	ncRNA
173327	chr4	7645371	7645730	+	0	NA	intron (NM_020777, intron 4 of 26)	intron (NM_020777, intron 4 of 26)	-108540	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
3645	chr1	16393151	16393650	+	0	NA	non-coding (NR_073501, exon 4 of 5)	non-coding (NR_073501, exon 4 of 5)	26158	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
191194	chr6	5279721	5280380	+	0	NA	intron (NM_001374876, intron 2 of 7)	intron (NM_001374876, intron 2 of 7)	18537	NM_001374879	10667		NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
78975	chr15	101640971	101641430	+	0	NA	TTS (NM_078474)	TTS (NM_078474)	11181	NM_078474	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
45364	chr11	118263251	118263350	+	0	NA	intron (NM_005797, intron 1 of 5)	intron (NM_005797, intron 1 of 5)	997	NM_005797	10205		NM_005797	ENSG00000149573	MPZL2	DFNB111|EVA|EVA1	myelin protein zero like 2	protein-coding
214147	chr7	144359301	144359930	+	0	NA	intron (NM_005435, intron 1 of 14)	L2c|LINE|L2	-3897	NR_126023	101928492		NR_126023		OR2A1-AS1	-	OR2A1 antisense RNA 1	ncRNA
133431	chr2	119289721	119289980	+	0	NA	Intergenic	Intergenic	-40779	NR_046721	100874111		NR_046721	ENSG00000229867	STEAP3-AS1	-	STEAP3 antisense RNA 1	ncRNA
180356	chr5	6758301	6758500	+	0	NA	Intergenic	Intergenic	-37480	NR_146281	109729133		NR_146281	ENSG00000251365	LINC02236	-	long intergenic non-protein coding RNA 2236	ncRNA
229113	chr9	114397791	114399780	+	0	NA	Intergenic	Intergenic	-4380	NM_030767	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
169019	chr3	152447371	152447810	+	0	NA	intron (NR_164862, intron 6 of 11)	(TTTTTCT)n|Simple_repeat|Simple_repeat	-106600	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
47552	chr12	4290571	4290930	+	0	NA	intron (NM_001759, intron 4 of 4)	intron (NM_001759, intron 4 of 4)	-14566	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
20426	chr1	198242171	198242730	+	0	NA	intron (NM_133494, intron 2 of 9)	AluSz|SINE|Alu	85452	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
208450	chr7	66924071	66924450	+	0	NA	intron (NM_017994, intron 1 of 6)	intron (NM_017994, intron 1 of 6)	3035	NM_017994	55069		NM_017994	ENSG00000106609	TMEM248	C7orf42	transmembrane protein 248	protein-coding
163729	chr3	52313021	52313500	+	0	NA	Intergenic	Intergenic	-3059	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
173243	chr4	6951901	6952250	+	0	NA	intron (NM_020773, intron 2 of 13)	intron (NM_020773, intron 2 of 13)	-2091	NM_001330638	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
104478	chr17	81124871	81125430	+	0	NA	promoter-TSS (NR_036151)	promoter-TSS (NR_036151)	223	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
193620	chr6	30747701	30748100	+	0	NA	Intergenic	Intergenic	-3353	NM_003897	8870		NM_003897	ENSG00000137331	IER3	DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1	immediate early response 3	protein-coding
85392	chr16	50295601	50296730	+	0	NA	intron (NM_001114, intron 7 of 25)	AluJb|SINE|Alu	3549	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
224925	chr9	32729451	32729630	+	0	NA	Intergenic	L1PA2|LINE|L1	-54000	NM_212558	401498		NM_212558	ENSG00000188133	TMEM215	-	transmembrane protein 215	protein-coding
13849	chr1	117653721	117655150	+	0	NA	Intergenic	Intergenic	48387	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
86100	chr16	57650571	57650730	+	0	NA	intron (NM_001370442, intron 3 of 14)	intron (NM_001370442, intron 3 of 14)	11158	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
59669	chr13	28666751	28667050	+	0	NA	intron (NM_015932, intron 3 of 5)	MER20|DNA|hAT-Charlie	7770	NM_015932	51371		NM_015932	ENSG00000132963	POMP	C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1	proteasome maturation protein	protein-coding
146543	chr20	49980671	49980830	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-2230	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
56028	chr12	110430101	110430300	+	0	NA	Intergenic	Intergenic	20137	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
47044	chr12	463121	463930	+	0	NA	intron (NM_173593, intron 1 of 19)	L2c|LINE|L2	3586	NM_173593	283358		NM_173593	ENSG00000139044	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein-coding
86468	chr16	66946471	66946650	+	0	NA	Intergenic	AluSx1|SINE|Alu	11044	NM_198061	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
149740	chr21	34405651	34405750	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-4628	NM_001364711	102723451		NM_001364711	ENSG00000277277	LOC102723451	FAM243B	family with sequence similarity 243 member B	protein-coding
184960	chr5	113293101	113293580	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	1598	NM_002387	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
123692	chr19	55014651	55015350	+	0	NA	exon (NM_001256017, exon 7 of 7).2	exon (NM_001256017, exon 7 of 7).2	23264	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
173570	chr4	10110321	10110650	+	0	NA	intron (NM_017491, intron 2 of 14)	intron (NM_017491, intron 2 of 14)	6314	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
60538	chr13	41458701	41459350	+	0	NA	intron (NM_014059, intron 2 of 4)	intron (NM_014059, intron 2 of 4)	1475	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
59003	chr13	20127321	20129050	+	0	NA	Intergenic	CpG	25484	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
44900	chr11	115117451	115117550	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-216077	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
120218	chr19	42304551	42305050	+	0	NA	intron (NM_199285, intron 1 of 2)	AluJo|SINE|Alu	-2000	NM_001145940	5050		NM_002573	ENSG00000079462	PAFAH1B3	PAFAHG	platelet activating factor acetylhydrolase 1b catalytic subunit 3	protein-coding
169313	chr3	158799301	158799780	+	0	NA	Intergenic	L2|LINE|L2	-2514	NM_022736	64747		NM_022736	ENSG00000118855	MFSD1	Minerva|SMAP4	major facilitator superfamily domain containing 1	protein-coding
191929	chr6	15594971	15595130	+	0	NA	intron (NM_183040, intron 6 of 8)	intron (NM_183040, intron 6 of 8)	67978	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
7136	chr1	32204001	32204400	+	0	NA	exon (NM_024296, exon 4 of 6)	exon (NM_024296, exon 4 of 6)	-1471	NM_001160042	55721		NM_018134	ENSG00000160051	IQCC	-	IQ motif containing C	protein-coding
156271	chr22	40422721	40423380	+	0	NA	intron (NM_001282661, intron 8 of 13)	intron (NM_001282661, intron 8 of 13)	40390	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
88014	chr16	81005601	81005800	+	0	NA	promoter-TSS (NM_018455)	promoter-TSS (NM_018455)	-798	NM_001270473	55839		NM_018455	ENSG00000166451	CENPN	BM039|C16orf60|CENP-N|ICEN32	centromere protein N	protein-coding
140802	chr2	236179471	236179630	+	0	NA	Intergenic	CpG	-11164	NM_001485	2637		NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
64110	chr14	22819101	22819500	+	0	NA	intron (NM_001126106, intron 1 of 10)	intron (NM_001126106, intron 1 of 10)	491	NM_001126106	9056		NM_003982	ENSG00000155465	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	solute carrier family 7 member 7	protein-coding
147965	chr20	62975821	62976550	+	0	NA	Intergenic	Intergenic	23476	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
146270	chr20	49045051	49048230	+	0	NA	promoter-TSS (NR_110624)	promoter-TSS (NR_110624)	328	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
10263	chr1	64505101	64506750	+	0	NA	promoter-TSS (NM_001293274)	promoter-TSS (NM_001293274)	11	NM_001293274	57685		NM_020925	ENSG00000158966	CACHD1	-	cache domain containing 1	protein-coding
75955	chr15	70466851	70467200	+	0	NA	Intergenic	Intergenic	38903	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
189541	chr5	173919501	173919700	+	0	NA	intron (NM_001308191, intron 2 of 7)	intron (NM_001308191, intron 2 of 7)	26549	NM_001308193	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
238276	chrX	149468451	149469350	+	0	NA	Intergenic	Intergenic	36406	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
179784	chr5	342971	343130	+	0	NA	intron (NM_001377239, intron 1 of 10)	intron (NM_001377239, intron 1 of 10)	20440	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
49567	chr12	26935071	26935230	+	0	NA	intron (NM_018164, intron 2 of 16)	L2a|LINE|L2	2831	NM_018164	55726		NM_018164	ENSG00000064102	INTS13	ASUN|C12orf11|GCT1|Mat89Bb|NET48|SPATA30	integrator complex subunit 13	protein-coding
201841	chr6	150141901	150142100	+	0	NA	Intergenic	Intergenic	-1044	NM_030949	81706		NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1 regulatory inhibitor subunit 14C	protein-coding
212170	chr7	116874071	116874700	+	0	NA	intron (NM_006136, intron 1 of 9)	intron (NM_006136, intron 1 of 9)	11798	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
60769	chr13	45109171	45109550	+	0	NA	intron (NR_120424, intron 2 of 2)	MER92C|LTR|ERV1	3081	NR_120424	101929259		NR_120424		LOC101929259	-	uncharacterized LOC101929259	ncRNA
79866	chr16	1504001	1504600	+	0	NA	intron (NM_016111, intron 15 of 20)	AluSx3|SINE|Alu	10940	NM_016111	9894		NM_016111	ENSG00000100726	TELO2	CLK2|TEL2|YHFS	telomere maintenance 2	protein-coding
9792	chr1	53583451	53583550	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	124101	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
165494	chr3	99877801	99878480	+	0	NA	intron (NM_182909, intron 4 of 5)	intron (NM_182909, intron 4 of 5)	-1937	NM_001282793	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
112676	chr19	7027821	7028080	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	-2633	NM_001136507	284428		NM_001136507	ENSG00000237247	MBD3L5	-	methyl-CpG binding domain protein 3 like 5	protein-coding
84207	chr16	29874101	29875450	+	0	NA	intron (NM_001114099, intron 12 of 16)	AluSx1|SINE|Alu	10941	NR_015396	440356		NR_015396	ENSG00000293487	CDIPTOSP	CDIPT-AS1|lnc-CTHCC	CDIP transferase opposite strand, pseudogene	ncRNA
65543	chr14	51926451	51926750	+	0	NA	intron (NM_053064, intron 2 of 3)	MER61A|LTR|ERV1	-8029	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
229736	chr9	124894651	124895950	+	0	NA	intron (NM_002077, intron 15 of 22)	intron (NM_002077, intron 15 of 22)	33170	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
205157	chr7	7221771	7221950	+	0	NA	intron (NM_020156, intron 1 of 3)	LTR16A2|LTR|ERVL	-33294	NR_108073	101927354		NR_108073	ENSG00000230825	LINC03016	-	long intergenic non-protein coding RNA 3016	ncRNA
135159	chr2	157515571	157515730	+	0	NA	Intergenic	L1PA2|LINE|L1	-71561	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
92950	chr17	17018171	17018880	+	0	NA	Intergenic	L2b|LINE|L2	-23932	NM_001364716	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
166367	chr3	113013501	113014150	+	0	NA	intron (NM_001319111, intron 2 of 7)	intron (NM_001319111, intron 2 of 7)	5846	NM_001319111	25871		NM_015412	ENSG00000163608	NEPRO	ANXD3|C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
157850	chr22	48575251	48575430	+	0	NA	promoter-TSS (NM_015381)	promoter-TSS (NM_015381)	-1000	NM_015381	25817		NM_015381	ENSG00000219438	TAFA5	FAM19A5|QLLK5208|TAFA-5|UNQ5208	TAFA chemokine like family member 5	protein-coding
816	chr1	1561851	1562350	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	12763	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
40000	chr11	62640301	62642030	+	0	NA	promoter-TSS (NM_001329222)	promoter-TSS (NM_001329222)	-947	NM_001329222	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
143333	chr20	25706371	25707050	+	0	NA	Intergenic	L1PA7|LINE|L1	-9857	NM_015655	26152		NM_015655	ENSG00000130684	ZNF337	-	zinc finger protein 337	protein-coding
126809	chr2	30446771	30448780	+	0	NA	intron (NM_001304446, intron 1 of 5)	CpG	529	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
160188	chr3	23800771	23800950	+	0	NA	Intergenic	Intergenic	-5095	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
176769	chr4	102430751	102431680	+	0	NA	intron (NR_136202, intron 2 of 4)	AluY|SINE|Alu	-70144	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
75437	chr15	65804171	65805600	+	0	NA	Intergenic	Intergenic	-12592	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
119985	chr19	41908601	41908800	+	0	NA	intron (NM_001365103, intron 5 of 5)	intron (NM_001365103, intron 5 of 5)	19749	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
88837	chr16	87492211	87494130	+	0	NA	promoter-TSS (NM_015144)	promoter-TSS (NM_015144)	-146	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
151354	chr21	45739801	45740180	+	0	NA	intron (NM_001382287, intron 2 of 15)	intron (NM_001382287, intron 2 of 15)	-8024	NM_001348243	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
182782	chr5	68425021	68425630	+	0	NA	Intergenic	LTR33B|LTR|ERVL	132748	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
217523	chr8	29249451	29250600	+	0	NA	intron (NM_015254, intron 1 of 39)	intron (NM_015254, intron 1 of 39)	13045	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
109802	chr19	1155551	1155730	+	0	NA	intron (NM_014963, intron 1 of 31)	MIRb|SINE|MIR	18628	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
89780	chr16	89476201	89477430	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	13746	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
177414	chr4	112302321	112303250	+	0	NA	intron (NM_001253884, intron 1 of 14)	L2a|LINE|L2	5416	NM_001102406	80216		NM_025144	ENSG00000073331	ALPK1	8430410J10Rik|LAK|ROSAH	alpha kinase 1	protein-coding
45928	chr11	120985771	120986350	+	0	NA	exon (NM_014619, exon 21 of 21)	exon (NM_014619, exon 21 of 21)	-28021	NR_133004	101929208		NR_133004		LOC101929208	-	uncharacterized LOC101929208	ncRNA
179683	chr4	190069251	190069550	+	0	NA	Intergenic	CpG	4171	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
147851	chr20	62804121	62805730	+	0	NA	promoter-TSS (NM_007346)	promoter-TSS (NM_007346)	90	NM_007346	11054		NM_007346	ENSG00000060491	OGFR	-	opioid growth factor receptor	protein-coding
185224	chr5	122382971	122383130	+	0	NA	intron (NM_005460, intron 1 of 10)	L1PA2|LINE|L1	-8039	NR_131761	9627		NM_005460	ENSG00000064692	SNCAIP	SYPH1|Sph1	synuclein alpha interacting protein	protein-coding
237571	chrX	121877601	121877840	+	0	NA	Intergenic	L1PA3|LINE|L1	506748	NR_037444	100500869		NR_037444	ENSG00000265456	MIR3672	-	microRNA 3672	ncRNA
203043	chr6	165484321	165484580	+	0	NA	intron (NM_001385079, intron 2 of 21)	Charlie3|DNA|hAT-Charlie	-174845	NM_144980	168090		NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
41664	chr11	66567721	66569080	+	0	NA	exon (NM_003793, exon 1 of 13)	exon (NM_003793, exon 1 of 13)	206	NM_003793	8722		NM_003793	ENSG00000174080	CTSF	CATSF|CLN13	cathepsin F	protein-coding
198173	chr6	95690451	95690550	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	112965	NM_024641	79694		NM_024641	ENSG00000172469	MANEA	ENDO|hEndo	mannosidase endo-alpha	protein-coding
68328	chr14	77589251	77589950	+	0	NA	intron (NM_004863, intron 2 of 11)	AluSx1|SINE|Alu	27037	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
16203	chr1	153866201	153866800	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	56472	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
3183	chr1	13708521	13708780	+	0	NA	intron (NM_015866, intron 1 of 8)	intron (NM_015866, intron 1 of 8)	3795	NM_012231	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
17406	chr1	156639721	156640180	+	0	NA	Intergenic	Intergenic	-2167	NM_198427	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
128825	chr2	63052821	63053380	+	0	NA	intron (NM_014562, intron 3 of 4)	intron (NM_014562, intron 3 of 4)	2270	NM_014562	5013		NM_014562	ENSG00000115507	OTX1	-	orthodenticle homeobox 1	protein-coding
234498	chrX	19198521	19198780	+	0	NA	Intergenic	L1ME2|LINE|L1	-76013	NM_001184833	10149		NM_005756	ENSG00000173698	ADGRG2	CBAVDX|EDDM6|GPR64|HE6|TM7LN2	adhesion G protein-coupled receptor G2	protein-coding
66709	chr14	64303271	64303850	+	0	NA	5' UTR (NM_001291712, exon 3 of 14)	5' UTR (NM_001291712, exon 3 of 14)	-9150	NM_001437	2100		NM_001437	ENSG00000140009	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8	estrogen receptor 2	protein-coding
61032	chr13	48193551	48193980	+	0	NA	Intergenic	L1MB3|LINE|L1	-39441	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
20847	chr1	201831321	201831730	+	0	NA	intron (NM_018085, intron 1 of 23)	intron (NM_018085, intron 1 of 23)	-1966	NR_046696	100873949		NR_046696	ENSG00000231871	IPO9-AS1	-	IPO9 antisense RNA 1	ncRNA
39336	chr11	59199951	59200300	+	0	NA	intron (NM_015177, intron 8 of 8)	THE1B|LTR|ERVL-MaLR	12802	NM_001039396	219972		NM_001039396	ENSG00000197629	MPEG1	IMD77|MPG1|MPS1|Mpg-1|P-2	macrophage expressed 1	protein-coding
150352	chr21	42163051	42163680	+	0	NA	Intergenic	Intergenic	-36324	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
222558	chr8	140611021	140611480	+	0	NA	intron (NM_012154, intron 1 of 18)	Charlie1a|DNA|hAT-Charlie	24383	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
108268	chr18	63267101	63267500	+	0	NA	intron (NM_000633, intron 2 of 2)	L2c|LINE|L2	52469	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
81692	chr16	11228121	11228380	+	0	NA	Intergenic	AluJr|SINE|Alu	27932	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
214072	chr7	143397451	143398000	+	0	NA	intron (NM_005232, intron 8 of 17)	intron (NM_005232, intron 8 of 17)	-10088	NR_033897	285965		NR_033897	ENSG00000229153	EPHA1-AS1	-	EPHA1 antisense RNA 1	ncRNA
54304	chr12	89451801	89452000	+	0	NA	intron (NM_172240, intron 10 of 11)	intron (NM_172240, intron 10 of 11)	72896	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
145925	chr20	46013151	46013250	+	0	NA	TTS (NR_147699)	TTS (NR_147699)	4292	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
218436	chr8	47902121	47902580	+	0	NA	intron (NM_006904, intron 27 of 85)	L2c|LINE|L2	57786	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
59361	chr13	24630951	24631250	+	0	NA	Intergenic	Intergenic	-49308	NM_001676	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
229532	chr9	122833601	122833800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5112	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
142488	chr20	4684971	4685380	+	0	NA	Intergenic	Intergenic	-1281	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
104795	chr17	81732101	81732300	+	0	NA	Intergenic	Intergenic	19916	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
67501	chr14	70944671	70944830	+	0	NA	intron (NM_014982, intron 1 of 35)	THE1C|LTR|ERVL-MaLR	37291	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
72904	chr15	40344071	40345200	+	0	NA	Intergenic	Intergenic	-3668	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
218897	chr8	60676271	60676980	+	0	NA	Intergenic	Intergenic	-2115	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
28864	chr10	62682501	62682980	+	0	NA	Intergenic	Intergenic	-121980	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
70619	chr14	102804671	102804830	+	0	NA	intron (NM_001199427, intron 1 of 7)	AluJr|SINE|Alu	27271	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
46095	chr11	122851451	122852060	+	0	NA	exon (NM_019604, exon 3 of 10)	exon (NM_019604, exon 3 of 10)	-10576	NM_001304782	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
147300	chr20	57659701	57659900	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	30886	NM_001255976	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
14272	chr1	143501021	143501480	+	0	NA	Intergenic	Intergenic	-76566	NR_027356	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
201396	chr6	145817271	145817630	+	0	NA	intron (NR_038244, intron 1 of 3)	MLT1A1|LTR|ERVL-MaLR	2574	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
42466	chr11	69670001	69670850	+	0	NA	intron (NM_153451, intron 3 of 4)	intron (NM_153451, intron 3 of 4)	4928	NM_153451	220064		NM_153451	ENSG00000149716	LTO1	CIAB1|ORAOV1|TAOS1	LTO1 maturation factor of ABCE1	protein-coding
53880	chr12	70264251	70264600	+	0	NA	intron (NR_037615, intron 1 of 16)	L1M4b|LINE|L1	20711	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
182586	chr5	65983801	65984000	+	0	NA	intron (NM_001253697, intron 1 of 25)	intron (NM_001253697, intron 1 of 25)	-38327	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
187264	chr5	141509021	141509380	+	0	NA	intron (NM_018912, intron 3 of 3)	intron (NM_018912, intron 3 of 3)	19959	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
190227	chr5	178245751	178246050	+	0	NA	intron (NM_173465, intron 25 of 28)	intron (NM_173465, intron 25 of 28)	-13078	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
192045	chr6	16490221	16490800	+	0	NA	intron (NM_000332, intron 6 of 8)	intron (NM_000332, intron 6 of 8)	251923	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
120120	chr19	42190971	42191480	+	0	NA	Intergenic	LTR33|LTR|ERVL	26452	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
141804	chr20	305721	306250	+	0	NA	Intergenic	AluSx|SINE|Alu	8415	NM_033089	85364		NM_033089	ENSG00000247315	ZCCHC3	C20orf99	zinc finger CCHC-type containing 3	protein-coding
29231	chr10	69085901	69086550	+	0	NA	Intergenic	Intergenic	-1378	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
136537	chr2	177310871	177311030	+	0	NA	intron (NR_026966, intron 8 of 8)	THE1D|LTR|ERVL-MaLR	2932	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
206539	chr7	35253621	35254480	+	0	NA	promoter-TSS (NM_001166220)	promoter-TSS (NM_001166220)	50	NM_001077653	57057		NM_020417	ENSG00000164532	TBX20	ASD4	T-box transcription factor 20	protein-coding
196458	chr6	43513971	43514130	+	0	NA	intron (NM_015388, intron 3 of 8)	AluSx3|SINE|Alu	2876	NM_015388	25844		NM_015388	ENSG00000137207	YIPF3	C6orf109|FinGER3|KLIP1|YIPFbeta2|Yip5b|dJ337H4.3	Yip1 domain family member 3	protein-coding
220626	chr8	100935971	100936980	+	0	NA	intron (NM_001135702, intron 2 of 5)	L1MC4a|LINE|L1	14096	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
46060	chr11	122728901	122729500	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	73478	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
142615	chr20	5600371	5600730	+	0	NA	intron (NM_019593, intron 2 of 19)	AluSz|SINE|Alu	10456	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
184305	chr5	96879651	96880880	+	0	NA	intron (NM_001130140, intron 2 of 18)	intron (NM_001130140, intron 2 of 18)	3765	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
157034	chr22	42564851	42565350	+	0	NA	intron (NR_104300, intron 8 of 10)	7SK|RNA|RNA	11144	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
157301	chr22	44454921	44456180	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	12223	NR_109966	101927526		NR_109966	ENSG00000232655	LINC01656	-	long intergenic non-protein coding RNA 1656	ncRNA
98153	chr17	46029371	46029930	+	0	NA	TTS (NM_001379198).3	TTS (NM_001379198).3	30400	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
221523	chr8	124654271	124654630	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	74023	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
103324	chr17	77956201	77956600	+	0	NA	Intergenic	AluSc8|SINE|Alu	-47837	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
190343	chr5	179668351	179668750	+	0	NA	intron (NR_134259, intron 3 of 3)	ERVL-E-int|LTR|ERVL	10444	NR_134259	105377763		NR_134259		LOC105377763	-	uncharacterized LOC105377763	ncRNA
114979	chr19	14030221	14030900	+	0	NA	intron (NM_001311197, intron 2 of 2)	AluSx1|SINE|Alu	-1202	NM_004843	9466		NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
215563	chr7	158812251	158812350	+	0	NA	intron (NM_020728, intron 1 of 21)	MER63D|DNA|hAT-Blackjack	17209	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
1628	chr1	3744721	3745200	+	0	NA	intron (NR_033710, intron 1 of 5)	intron (NR_033710, intron 1 of 5)	1811	NR_033712	57212		NM_207306	ENSG00000293478	GFOD3P	KIAA0495|PDAM|TP73-AS1	Gfo/Idh/MocA-like oxidoreductase domain containing 3, pseudogene	pseudo
190192	chr5	178208151	178208250	+	0	NA	TTS (NR_103510)	TTS (NR_103510)	3667	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
74243	chr15	56888471	56888730	+	0	NA	intron (NR_015419, intron 3 of 3)	L2a|LINE|L2	-29490	NM_001322151	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
69189	chr14	92660871	92661230	+	0	NA	intron (NM_024832, intron 7 of 9)	MIRb|SINE|MIR	84816	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
50816	chr12	49092181	49092900	+	0	NA	intron (NM_021044, intron 1 of 2)	intron (NM_021044, intron 1 of 2)	2261	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
64047	chr14	22535301	22535530	+	0	NA	Intergenic	Intergenic	21647	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
213455	chr7	138875651	138876500	+	0	NA	intron (NM_001164665, intron 12 of 19)	L2c|LINE|L2	-77879	NM_020632	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
853	chr1	1612051	1612950	+	0	NA	Intergenic	Intergenic	-2915	NM_001170688	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
38041	chr11	35156471	35157150	+	0	NA	intron (NM_001202557, intron 1 of 8)	AluJr|SINE|Alu	-6140	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
152786	chr22	21815771	21815930	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSx3|SINE|Alu	51795	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
9269	chr1	46302801	46304450	+	0	NA	promoter-TSS (NM_001297566)	promoter-TSS (NM_001297566)	-9	NM_006369	10489		NM_006369	ENSG00000132128	LRRC41	MUF1|PP7759	leucine rich repeat containing 41	protein-coding
109787	chr19	1146371	1147130	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	-14529	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
34560	chr10	133140251	133140350	+	0	NA	Intergenic	Intergenic	-19919	NM_001347864	85442		NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND	kinase non-catalytic C-lobe domain containing 1	protein-coding
182807	chr5	69007671	69008080	+	0	NA	intron (NR_130778, intron 1 of 3)	intron (NR_130778, intron 1 of 3)	22052	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
201368	chr6	144758751	144758850	+	0	NA	intron (NM_001375323, intron 8 of 24)	intron (NM_001375323, intron 8 of 24)	175652	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
95173	chr17	35169901	35170300	+	0	NA	intron (NM_173167, intron 10 of 18)	intron (NM_173167, intron 10 of 18)	21836	NM_173167	146862		NM_173167	ENSG00000141161	UNC45B	CMYA4|CTRCT43|MFM11|SMUNC45|UNC-45B|UNC45	unc-45 myosin chaperone B	protein-coding
32885	chr10	110150821	110151530	+	0	NA	intron (NR_164121, intron 1 of 2)	intron (NR_164121, intron 1 of 2)	805	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
115637	chr19	16105571	16105730	+	0	NA	Intergenic	AluSp|SINE|Alu	-6239	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
190049	chr5	177553401	177555000	+	0	NA	promoter-TSS (NM_001366499)	promoter-TSS (NM_001366499)	-105	NM_001366499	54540		NM_019057	ENSG00000146067	FAM193B	IRIZIO	family with sequence similarity 193 member B	protein-coding
75089	chr15	64392751	64393050	+	0	NA	intron (NM_001321924, intron 1 of 12)	AluJb|SINE|Alu	5064	NM_016213	9325		NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5	thyroid hormone receptor interactor 4	protein-coding
68964	chr14	91418701	91420450	+	0	NA	Intergenic	Intergenic	-1755	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
140619	chr2	233440901	233441100	+	0	NA	intron (NM_001377259, intron 7 of 27)	intron (NM_001377259, intron 7 of 27)	21788	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
71081	chr14	104862201	104862850	+	0	NA	Intergenic	Intergenic	-2743	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
39907	chr11	62513301	62514030	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	31999	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
107591	chr18	48867901	48869570	+	0	NA	Intergenic	Intergenic	74072	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
83251	chr16	23897021	23897500	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	61277	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
217090	chr8	24271851	24272150	+	0	NA	Intergenic	Intergenic	-22040	NR_130709	10863		NM_014265	ENSG00000042980	ADAM28	ADAM 28|MDC-L|MDCL|eMDC II|eMDCII	ADAM metallopeptidase domain 28	protein-coding
99277	chr17	49752201	49753330	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	11366	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
185409	chr5	129126771	129127000	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	29197	NR_039776	100616175		NR_039776	ENSG00000264563	MIR4633	-	microRNA 4633	ncRNA
34595	chr10	133260331	133260610	+	0	NA	Intergenic	Intergenic	-12585	NR_108079	101927671		NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
236663	chrX	76217301	76217500	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	44338	NM_016500	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
157978	chr22	49826701	49827400	+	0	NA	intron (NM_001304808, intron 1 of 12)	CpG	823	NM_001304808	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
15787	chr1	151208621	151209250	+	0	NA	intron (NM_001135637, intron 1 of 13)	AluY|SINE|Alu	10383	NM_003557	8394		NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein-coding
21215	chr1	204098771	204098930	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	25735	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
60947	chr13	46492921	46493180	+	0	NA	Intergenic	Intergenic	-26274	NR_120426	101929344		NR_120426	ENSG00000231817	LINC01198	-	long intergenic non-protein coding RNA 1198	ncRNA
133223	chr2	113183651	113183750	+	0	NA	intron (NM_012455, intron 2 of 16)	LTR89|LTR|ERVL?	9729	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
84719	chr16	30895771	30896230	+	0	NA	promoter-TSS (NM_001330)	promoter-TSS (NM_001330)	-614	NM_001330	1489		NM_001330	ENSG00000150281	CTF1	CT-1|CT1	cardiotrophin 1	protein-coding
126612	chr2	28792151	28793280	+	0	NA	intron (NM_206876, intron 7 of 8)	intron (NM_206876, intron 7 of 8)	-18119	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
43554	chr11	82971301	82972250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	62499	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
47756	chr12	6540201	6541700	+	0	NA	intron (NM_001039670, intron 9 of 9)	AluSg|SINE|Alu	5686	NM_001256799	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
94390	chr17	28953461	28954300	+	0	NA	Intergenic	Intergenic	-2362	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
14625	chr1	145455451	145455750	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	-49822	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
7566	chr1	35164501	35165100	+	0	NA	Intergenic	AluSx3|SINE|Alu	28345	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
80160	chr16	2106921	2107180	+	0	NA	promoter-TSS (NR_106775)	promoter-TSS (NR_106775)	-297	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
107417	chr18	46182901	46183100	+	0	NA	intron (NM_145055, intron 1 of 4)	intron (NM_145055, intron 1 of 4)	8966	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
237419	chrX	119627501	119627900	+	0	NA	intron (NM_145799, intron 9 of 10)	intron (NM_145799, intron 9 of 10)	19148	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
162874	chr3	49369401	49369600	+	0	NA	intron (NM_001313941, intron 3 of 5)	AluSx|SINE|Alu	-10900	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
140787	chr2	235698251	235698550	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	-180479	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
234466	chrX	17769501	17769950	+	0	NA	Intergenic	Intergenic	32232	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
55995	chr12	110294671	110295180	+	0	NA	intron (NM_170665, intron 4 of 19)	AluSx|SINE|Alu	13678	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
203349	chr6	170291311	170293330	+	0	NA	intron (NM_001286379, intron 1 of 10).2	CpG-24321	-1242	NM_005618	28514		NM_005618	ENSG00000198719	DLL1	DELTA1|DL1|Delta|NEDBAS	delta like canonical Notch ligand 1	protein-coding
133347	chr2	113922701	113922900	+	0	NA	intron (NM_005721, intron 3 of 11)	L2c|LINE|L2	-31808	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128547	chr2	60869071	60869230	+	0	NA	intron (NR_033980, intron 1 of 2)	MLT1A0|LTR|ERVL-MaLR	12164	NR_033980	400957		NR_033980	ENSG00000228414	REL-DT	LINC01185	REL divergent transcript	ncRNA
80408	chr16	2602071	2602600	+	0	NA	3' UTR (NM_001261816, exon 12 of 12)	3' UTR (NM_001261816, exon 12 of 12)	-1049	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
113271	chr19	8519801	8520700	+	0	NA	TTS (NM_001348355)	TTS (NM_001348355)	-6083	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
43042	chr11	74033101	74033550	+	0	NA	intron (NM_001286577, intron 31 of 32)	intron (NM_001286577, intron 31 of 32)	-24088	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
108296	chr18	63322271	63322450	+	0	NA	Intergenic	Intergenic	-2591	NM_000657	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
94365	chr17	28914471	28914900	+	0	NA	intron (NM_020889, intron 7 of 8)	AluYk4|SINE|Alu	-11590	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
236764	chrX	78947121	78947580	+	0	NA	intron (NM_001324225, intron 2 of 3)	intron (NM_001324225, intron 2 of 3)	1959	NM_001324225	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
109619	chr19	954151	954250	+	0	NA	intron (NM_005224, intron 3 of 8)	intron (NM_005224, intron 3 of 8)	28165	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
80195	chr16	2142951	2143650	+	0	NA	Intergenic	Intergenic	-4844	NM_001308053	25837		NM_014353	ENSG00000167964	RAB26	V46133	RAB26, member RAS oncogene family	protein-coding
17355	chr1	156499581	156502080	+	0	NA	promoter-TSS (NM_005920)	promoter-TSS (NM_005920)	-55	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
19228	chr1	172566571	172566730	+	0	NA	intron (NM_001282751, intron 6 of 21)	MER66B|LTR|ERV1	33500	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
55960	chr12	110040271	110040830	+	0	NA	TTS (NR_148516)	TTS (NR_148516)	8097	NR_148516								
46325	chr11	125404671	125405100	+	0	NA	intron (NM_001382334, intron 7 of 9)	intron (NM_001382334, intron 7 of 9)	-90329	NR_164146	403312		NM_203452	ENSG00000255537	LOC403312	-	putative uncharacterized protein MGC39545	ncRNA
230322	chr9	127972751	127973050	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	8089	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
114946	chr19	13982771	13983780	+	0	NA	intron (NM_002918, intron 3 of 20)	intron (NM_002918, intron 3 of 20)	23045	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
158281	chr22	50348201	50348400	+	0	NA	intron (NM_001351641, intron 1 of 23)	L2b|LINE|L2	4973	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
42280	chr11	68310101	68310330	+	0	NA	Intergenic	L2a|LINE|L2	-2376	NM_001291902	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
21654	chr1	206685501	206686300	+	0	NA	intron (NM_032960, intron 1 of 9)	CpG	995	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
133841	chr2	128196201	128196400	+	0	NA	TTS (NR_027671)	TTS (NR_027671)	105100	NR_027671	56886		NM_020120	ENSG00000136731	UGGT1	HUGT1|UGCGL1|UGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding
4319	chr1	20466271	20466500	+	0	NA	Intergenic	L2b|LINE|L2	19825	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
47276	chr12	1593451	1595780	+	0	NA	promoter-TSS (NM_152441)	promoter-TSS (NM_152441)	-34	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
141210	chr2	239377151	239377650	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	23620	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
92452	chr17	8474001	8474400	+	0	NA	TTS (NM_001256012)	TTS (NM_001256012)	38316	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
179032	chr4	165209121	165209580	+	0	NA	promoter-TSS (NM_001161521)	promoter-TSS (NM_001161521)	-669	NM_001161521	11275		NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
38610	chr11	46330351	46330450	+	0	NA	Intergenic	MIRb|SINE|MIR	-2526	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
46473	chr11	128302151	128303430	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	94024	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
92234	chr17	7907351	7907650	+	0	NA	intron (NM_005852, intron 32 of 38)	intron (NM_005852, intron 32 of 38)	1377	NR_003000	677763		NR_003000	ENSG00000252835	SCARNA21	ACA68|SCARNA21A	small Cajal body-specific RNA 21	ncRNA
171023	chr3	195107351	195107650	+	0	NA	intron (NM_001308069, intron 3 of 3)	(GGA)n|Simple_repeat|Simple_repeat	12912	NR_104188	100874528		NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
67429	chr14	70621951	70622370	+	0	NA	intron (NR_110071, intron 2 of 2)	L1M4|LINE|L1	19138	NR_110071	101928075		NR_110071	ENSG00000245466	TTC9-DT	-	TTC9 divergent transcript	ncRNA
366	chr1	1027371	1027980	+	0	NA	intron (NM_198576, intron 2 of 35)	intron (NM_198576, intron 2 of 35)	-6318	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
160453	chr3	30085671	30085830	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-151594	NR_046556	100873977		NR_046556	ENSG00000235593	RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
209066	chr7	74782471	74782630	+	0	NA	intron (NM_000265, intron 5 of 10)	AluJo|SINE|Alu	8588	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
111291	chr19	3573701	3574680	+	0	NA	intron (NM_006339, intron 3 of 9)	CpG-13301	1246	NM_006339	10362		NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
151211	chr21	45168921	45169330	+	0	NA	intron (NM_001346687, intron 1 of 11)	L1MDa|LINE|L1	16595	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
83948	chr16	29137971	29138330	+	0	NA	Intergenic	Intergenic	63308	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
193927	chr6	31643871	31644630	+	0	NA	intron (NM_080702, intron 11 of 24).6	intron (NM_080702, intron 11 of 24).6	8140	NM_001098534	7917		NM_004639	ENSG00000204463	BAG6	BAG-6|BAT3|D6S52E|G3	BAG cochaperone 6	protein-coding
63407	chr13	114078451	114079280	+	0	NA	promoter-TSS (NM_001320822).2	promoter-TSS (NM_001320822).2	-910	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
236286	chrX	66200371	66200530	+	0	NA	intron (NM_001367238, intron 11 of 19)	intron (NM_001367238, intron 11 of 19)	32700	NM_001367234	9843		NM_014799	ENSG00000089472	HEPH	CPL	hephaestin	protein-coding
166348	chr3	112976071	112976530	+	0	NA	Intergenic	Intergenic	-1197	NM_170780	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
148280	chr20	63699001	63699800	+	0	NA	TTS (NR_037882)	TTS (NR_037882)	2748	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
104822	chr17	81812121	81812500	+	0	NA	intron (NM_000160, intron 10 of 13)	intron (NM_000160, intron 10 of 13)	8160	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
47083	chr12	619371	619730	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	-9134	NM_001294345	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
208407	chr7	66736371	66736530	+	0	NA	intron (NM_001367727, intron 4 of 11)	L2c|LINE|L2	-4283	NM_001287062	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
138409	chr2	204996501	204996730	+	0	NA	intron (NM_205863, intron 3 of 21)	L1PA2|LINE|L1	451140	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
16726	chr1	155250001	155252150	+	0	NA	intron (NM_198264, intron 5 of 8).2	intron (NM_198264, intron 5 of 8).2	4408	NM_001267608	10712		NM_006589	ENSG00000160767	ENTREP3	C1orf2|COTE1|FAM189B	endosomal transmembrane epsin interactor 3	protein-coding
76358	chr15	74545651	74546900	+	0	NA	intron (NM_006465, intron 2 of 8)	intron (NM_006465, intron 2 of 8)	5055	NM_006465	10620		NM_006465	ENSG00000179361	ARID3B	BDP|DRIL2	AT-rich interaction domain 3B	protein-coding
82987	chr16	22003001	22003200	+	0	NA	Intergenic	Intergenic	-1984	NM_001363519	255762		NM_173806	ENSG00000155714	PDZD9	C16orf65	PDZ domain containing 9	protein-coding
48854	chr12	12392551	12393050	+	0	NA	intron (NM_058169, intron 2 of 3)	L3|LINE|CR1	35722	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
53133	chr12	57841651	57841950	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	4929	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
182301	chr5	58456601	58456800	+	0	NA	intron (NM_001252226, intron 9 of 14)	intron (NM_001252226, intron 9 of 14)	3386	NM_006622	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
144611	chr20	35832951	35833250	+	0	NA	intron (NM_016436, intron 2 of 17)	L2b|LINE|L2	61085	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
194041	chr6	31844451	31844550	+	0	NA	Intergenic	AluJb|SINE|Alu	7424	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
68098	chr14	75297671	75298230	+	0	NA	Intergenic	AluSx|SINE|Alu	3546	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
126966	chr2	36243551	36243850	+	0	NA	Intergenic	Intergenic	111870	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
102460	chr17	75711651	75712130	+	0	NA	Intergenic	AluJo|SINE|Alu	-9569	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
44402	chr11	103183971	103184330	+	0	NA	intron (NM_001377, intron 40 of 88)	L2c|LINE|L2	74724	NM_001080463	79659		NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding
152264	chr22	20258601	20258950	+	0	NA	intron (NM_023004, intron 1 of 1)	intron (NM_023004, intron 1 of 1)	9543	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
157586	chr22	45995801	45996000	+	0	NA	Intergenic	Intergenic	-10716	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
182034	chr5	55691821	55692080	+	0	NA	intron (NM_001258287, intron 1 of 13)	intron (NM_001258287, intron 1 of 13)	1103	NM_001258286	153129		NM_173514	ENSG00000177058	SLC38A9	SNAT9|URLC11	solute carrier family 38 member 9	protein-coding
110308	chr19	1842301	1843330	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	5668	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
158000	chr22	49867521	49868380	+	0	NA	intron (NM_014838, intron 1 of 1)	MER47A|DNA|TcMar-Tigger	14106	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
238138	chrX	136714701	136715250	+	0	NA	intron (NM_004840, intron 6 of 21)	MER20|DNA|hAT-Charlie	52840	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
79376	chr16	646671	646830	+	0	NA	intron (NR_138610, intron 2 of 4)	CpG	2563	NR_135177	105371038		NR_135177		LOC105371038	-	uncharacterized LOC105371038	ncRNA
22456	chr1	221440001	221440500	+	0	NA	Intergenic	Intergenic	-103954	NR_024236	400804		NR_024236	ENSG00000234754	LINC02817	C1orf140	long intergenic non-protein coding RNA 2817	ncRNA
148001	chr20	63031671	63031830	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	5278	NR_028295	100144596		NM_022099		LINC00029	C20orf51|NCRNA00029	long intergenic non-protein coding RNA 29	ncRNA
26050	chr10	12509321	12509780	+	0	NA	intron (NM_001351032, intron 3 of 11)	AluJb|SINE|Alu	-69203	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
128792	chr2	62306791	62307350	+	0	NA	Intergenic	Intergenic	91549	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
102791	chr17	76380551	76380850	+	0	NA	Intergenic	Intergenic	-2504	NM_001355139	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
83771	chr16	28731871	28732030	+	0	NA	exon (NM_001099661, exon 16 of 21).2	exon (NM_001099661, exon 16 of 21).2	7698	NR_107058	102465907		NR_107058	ENSG00000278340	MIR6862-2	hsa-mir-6862-2	microRNA 6862-2	ncRNA
99757	chr17	50965651	50965950	+	0	NA	3' UTR (NM_003971, exon 29 of 29)	3' UTR (NM_003971, exon 29 of 29)	81078	NM_001251971	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
172058	chr4	1020701	1021980	+	0	NA	intron (NM_001370296, intron 2 of 6)	intron (NM_001370296, intron 2 of 6)	8876	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
235860	chrX	50470451	50471150	+	0	NA	promoter-TSS (NM_001013742)	promoter-TSS (NM_001013742)	25	NM_001013742	139189		NM_001013742	ENSG00000274588	DGKK	-	diacylglycerol kinase kappa	protein-coding
214196	chr7	148555351	148555650	+	0	NA	Intergenic	L1PA6|LINE|L1	-35266	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
89491	chr16	89123821	89124080	+	0	NA	intron (NR_147928, intron 8 of 11)	intron (NR_147928, intron 8 of 11)	-12598	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
69387	chr14	94038601	94038800	+	0	NA	intron (NM_023112, intron 2 of 5)	L2c|LINE|L2	12360	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
89805	chr16	89535801	89536000	+	0	NA	intron (NM_003119, intron 9 of 16)	intron (NM_003119, intron 9 of 16)	-24757	NM_001243131	6137		NM_000977	ENSG00000167526	RPL13	BBC1|D16S444E|D16S44E|L13|SEMDIST|eL13	ribosomal protein L13	protein-coding
148334	chr20	63783901	63784400	+	0	NA	intron (NM_025224, intron 2 of 4)	intron (NM_025224, intron 2 of 4)	21353	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
154610	chr22	36301351	36302480	+	0	NA	intron (NM_002473, intron 20 of 40)	intron (NM_002473, intron 20 of 40)	-15008	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
176445	chr4	89288501	89289200	+	0	NA	intron (NM_198281, intron 1 of 1)	MIRb|SINE|MIR	18950	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
114690	chr19	13116151	13117600	+	0	NA	promoter-TSS (NM_001351760)	promoter-TSS (NM_001351760)	-135	NM_001351761	55621		NM_017722	ENSG00000104907	TRMT1	MRT68|TRM1	tRNA methyltransferase 1	protein-coding
88638	chr16	85634271	85634630	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	21128	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
7187	chr1	32268921	32269550	+	0	NA	intron (NM_005356, intron 1 of 12)	AluSz|SINE|Alu	-4876	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
163538	chr3	51673301	51673500	+	0	NA	intron (NM_001129884, intron 2 of 5)	intron (NM_001129884, intron 2 of 5)	1773	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
65584	chr14	52013751	52014930	+	0	NA	exon (NM_007361, exon 16 of 22)	exon (NM_007361, exon 16 of 22)	24794	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
94020	chr17	26939551	26939850	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	149541	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
105956	chr18	4068671	4068850	+	0	NA	intron (NM_001242761, intron 2 of 11)	intron (NM_001242761, intron 2 of 11)	106407	NR_102696	101410534		NR_102696		DLGAP1-AS4	-	DLGAP1 antisense RNA 4	ncRNA
18287	chr1	161128521	161128900	+	0	NA	intron (NM_001039711, intron 1 of 4)	intron (NM_001039711, intron 1 of 4)	3756	NM_001039712	9191		NM_004216	ENSG00000158796	DEDD	CASP8IP1|DEDD1|DEDPro1|DEFT|FLDED-1|FLDED1|KE05	death effector domain containing	protein-coding
97762	chr17	44484971	44485350	+	0	NA	intron (NM_001304940, intron 1 of 9)	AluJr|SINE|Alu	18246	NM_001002909	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
130923	chr2	87481801	87482550	+	0	NA	intron (NR_146461, intron 2 of 2)	AluY|SINE|Alu	12225	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
198720	chr6	108175351	108175850	+	0	NA	intron (NM_001286102, intron 3 of 8)	CpG	7577	NM_001286102	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
182978	chr5	71589801	71590480	+	0	NA	intron (NM_022132, intron 1 of 16)	(AC)n|Simple_repeat|Simple_repeat	2800	NM_022132	64087		NM_022132	ENSG00000131844	MCCC2	MCCB|MCCCbeta	methylcrotonyl-CoA carboxylase subunit 2	protein-coding
96299	chr17	39952301	39954200	+	0	NA	Intergenic	CpG	-9754	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
110971	chr19	2955521	2955780	+	0	NA	Intergenic	AluJb|SINE|Alu	-10679	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
31468	chr10	96511251	96511880	+	0	NA	intron (NM_012465, intron 1 of 20)	intron (NM_012465, intron 1 of 20)	2361	NM_012465	7093		NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding
76196	chr15	73560601	73560800	+	0	NA	TTS (NM_001348772)	TTS (NM_001348772)	8843	NR_103844	101241892		NR_103844	ENSG00000281183	NPTN-IT1	lncRNA-LET	NPTN intronic transcript 1	ncRNA
14752	chr1	146006021	146006330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9596	NM_006472	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
229655	chr9	124339251	124339750	+	0	NA	intron (NM_001166169, intron 7 of 9)	intron (NM_001166169, intron 7 of 9)	-13973	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
218391	chr8	46917621	46918400	+	0	NA	Intergenic	Intergenic	77124	NR_027012	497634		NR_027012	ENSG00000253314	LINC00293	BEYLA|NCRNA00293	long intergenic non-protein coding RNA 293	ncRNA
100518	chr17	62421321	62421800	+	0	NA	Intergenic	Intergenic	-2337	NM_181725	339175		NM_181725	ENSG00000087995	METTL2A	METTL2	methyltransferase 2A, tRNA N3-cytidine	protein-coding
216889	chr8	22670851	22671350	+	0	NA	Intergenic	Intergenic	-1952	NR_156436	55909		NM_018688	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
126998	chr2	36800331	36801500	+	0	NA	intron (NM_053276, intron 12 of 15)	intron (NM_053276, intron 12 of 15)	104208	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
31100	chr10	89264801	89265000	+	0	NA	Intergenic	MER52A|LTR|ERV1	-12861	NM_001288979	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
12689	chr1	109479871	109480350	+	0	NA	3' UTR (NM_001040709, exon 6 of 6)	3' UTR (NM_001040709, exon 6 of 6)	-3795	NM_153340	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
157807	chr22	46806201	46806400	+	0	NA	intron (NM_001284305, intron 4 of 12)	intron (NM_001284305, intron 4 of 12)	32373	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
22305	chr1	213082121	213082380	+	0	NA	intron (NM_001349663, intron 3 of 9)	AluY|SINE|Alu	31009	NM_012424	26750		NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
203376	chr6	170464221	170465150	+	0	NA	Intergenic	Intergenic	88622	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
105606	chr18	710021	710730	+	0	NA	intron (NM_001354065, intron 1 of 14)	AluJo|SINE|Alu	2255	NM_202758	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
8145	chr1	39378451	39378550	+	0	NA	exon (NM_012090, exon 47 of 93)	exon (NM_012090, exon 47 of 93)	-30573	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
141037	chr2	238220801	238221230	+	0	NA	Intergenic	MER52C|LTR|ERV1	10662	NR_026926	151174		NR_026925	ENSG00000186235	LINC02610	-	long intergenic non-protein coding RNA 2610	ncRNA
45874	chr11	119725421	119725680	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	3650	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
205100	chr7	6788271	6788430	+	0	NA	intron (NM_173565, intron 17 of 20)	intron (NM_173565, intron 17 of 20)	34241	NM_173565	222967		NM_173565	ENSG00000155026	RSPH10B	-	radial spoke head 10 homolog B	protein-coding
136316	chr2	175036521	175036980	+	0	NA	Intergenic	Intergenic	-31369	NM_001371513	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
120674	chr19	45104671	45105600	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	11956	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
168629	chr3	149751571	149752980	+	0	NA	exon (NM_016094, exon 2 of 5)	exon (NM_016094, exon 2 of 5)	214	NM_016094	51122		NM_016094	ENSG00000114744	COMMD2	HSPC042	COMM domain containing 2	protein-coding
229905	chr9	126607571	126608200	+	0	NA	Intergenic	Intergenic	-6043	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
214168	chr7	144820221	144821230	+	0	NA	intron (NR_146934, intron 1 of 6)	MIR|SINE|MIR	15215	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
187786	chr5	146202421	146204100	+	0	NA	promoter-TSS (NM_018989)	promoter-TSS (NM_018989)	-345	NM_018989	54439		NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18|ZC3H20	RNA binding motif protein 27	protein-coding
4700	chr1	23114171	23114650	+	0	NA	intron (NM_033631, intron 1 of 4)	intron (NM_033631, intron 1 of 4)	54446	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
21333	chr1	204544251	204545000	+	0	NA	exon (NM_001278517, exon 6 of 8)	exon (NM_001278517, exon 6 of 8)	28219	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
90920	chr17	2598801	2599300	+	0	NA	intron (NM_000430, intron 1 of 10)	intron (NM_000430, intron 1 of 10)	5396	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
23564	chr1	229407251	229407830	+	0	NA	Intergenic	CpG	26554	NM_001100	58		NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|CMYP2A|CMYP2B|CMYP2C|MPFD|NEM1|NEM2|NEM3|SHPM	actin alpha 1, skeletal muscle	protein-coding
27766	chr10	35341251	35342200	+	0	NA	intron (NM_001282852, intron 1 of 8)	intron (NM_001282852, intron 1 of 8)	4851	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
184667	chr5	107981321	107981580	+	0	NA	intron (NM_001163315, intron 7 of 8)	intron (NM_001163315, intron 7 of 8)	-310513	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
106005	chr18	7948551	7948850	+	0	NA	intron (NM_001378146, intron 1 of 29)	intron (NM_001378146, intron 1 of 29)	1825	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
34829	chr11	299801	300830	+	0	NA	promoter-TSS (NM_001025295)	promoter-TSS (NM_001025295)	-789	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
58580	chr12	132447551	132447650	+	0	NA	Intergenic	Intergenic	-42551	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
190076	chr5	177675201	177675500	+	0	NA	Intergenic	Intergenic	-3073	NR_026921	202181		NR_026921		SIMC1P1	-	SIMC1 pseudogene 1	pseudo
149518	chr21	32826471	32827050	+	0	NA	Intergenic	Intergenic	-13057	NM_001162496	56245		NM_019596	ENSG00000205929	EPCIP	B37|C21orf120|C21orf62|CU062|PRED81	exosomal polycystin 1 interacting protein	protein-coding
219864	chr8	85171721	85172230	+	0	NA	TTS (NR_134311)	TTS (NR_134311)	5066	NR_134311	102723322		NR_134311	ENSG00000260493	E2F5-DT	-	E2F5 divergent transcript	ncRNA
209098	chr7	74877971	74878130	+	0	NA	Intergenic	AluJb|SINE|Alu	12562	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
161727	chr3	44045951	44046050	+	0	NA	Intergenic	Intergenic	-68212	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA
117672	chr19	24085621	24085880	+	0	NA	intron (NM_001278677, intron 3 of 5)	AluSz6|SINE|Alu	-1410	NM_001278664	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
51263	chr12	51079751	51080830	+	0	NA	intron (NM_030809, intron 1 of 4)	intron (NM_030809, intron 1 of 4)	3306	NR_045072	81566		NM_030809	ENSG00000110925	CSRNP2	C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12	cysteine and serine rich nuclear protein 2	protein-coding
1206	chr1	2258101	2258600	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	30031	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
95008	chr17	32382501	32383000	+	0	NA	TTS (NM_001098507)	TTS (NM_001098507)	32593	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
178244	chr4	143508001	143508200	+	0	NA	Intergenic	L1MD|LINE|L1	-5602	NM_003601	8467		NM_003601	ENSG00000153147	SMARCA5	ISWI|SNF2H|WCRF135|hISWI|hSNF2H	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding
226148	chr9	63704241	63704650	+	0	NA	Intergenic	SST1|Satellite|centr	-108496	NR_146625	203274		NR_146625		LINC00537	-	long intergenic non-protein coding RNA 537	ncRNA
120773	chr19	45433621	45433880	+	0	NA	intron (NM_001369412, intron 1 of 9)	intron (NM_001369412, intron 1 of 9)	-2904	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
201431	chr6	147205721	147206250	+	0	NA	exon (NM_001127715, exon 2 of 28)	exon (NM_001127715, exon 2 of 28)	-1371	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
171329	chr3	195989401	195991200	+	0	NA	promoter-TSS (NR_003264)	promoter-TSS (NR_003264)	-21	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
227758	chr9	93106371	93106600	+	0	NA	intron (NR_160511, intron 1 of 4)	AluSx|SINE|Alu	10268	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
189416	chr5	172806201	172806400	+	0	NA	Intergenic	Intergenic	-27951	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
89390	chr16	88808071	88808430	+	0	NA	exon (NM_030928, exon 10 of 10)	exon (NM_030928, exon 10 of 10)	3678	NM_000485	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
71844	chr15	22225071	22225230	+	0	NA	TTS (NR_031672)	TTS (NR_031672)	179	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
106936	chr18	26548111	26548930	+	0	NA	promoter-TSS (NM_001142730)	promoter-TSS (NM_001142730)	33	NM_001142730	284252		NM_198991	ENSG00000134504	KCTD1	C18orf5	potassium channel tetramerization domain containing 1	protein-coding
122430	chr19	49466851	49467600	+	0	NA	intron (NM_001145396, intron 13 of 15)	AluJb|SINE|Alu	-6990	NM_001204502	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
77997	chr15	89574921	89576480	+	0	NA	exon (NM_152259, exon 1 of 22)	exon (NM_152259, exon 1 of 22)	113	NM_001308025	90381		NM_152259	ENSG00000140534	TICRR	C15orf42|SLD3|Treslin	TOPBP1 interacting checkpoint and replication regulator	protein-coding
20453	chr1	198553671	198554500	+	0	NA	Intergenic	Intergenic	-13140	NM_133326	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
99719	chr17	50887221	50888030	+	0	NA	Intergenic	AluYj4|SINE|Alu	-19647	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
7741	chr1	36150551	36151200	+	0	NA	intron (NM_001270895, intron 1 of 4)	intron (NM_001270895, intron 1 of 4)	-1361	NM_001270897	27095		NM_014408	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex subunit 3	protein-coding
153600	chr22	27801121	27802330	+	0	NA	promoter-TSS (NM_002430)	promoter-TSS (NM_002430)	31	NM_002430	4330		NM_002430	ENSG00000169184	MN1	CEBALID|MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	MN1 proto-oncogene, transcriptional regulator	protein-coding
179084	chr4	168318161	168319000	+	0	NA	intron (NM_017631, intron 1 of 37)	CpG	172	NM_017631	55601		NM_017631	ENSG00000137628	DDX60	-	DExD/H-box helicase 60	protein-coding
120891	chr19	45586951	45587250	+	0	NA	Intergenic	AluY|SINE|Alu	-2298	NM_001017989	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
214576	chr7	150621471	150622000	+	0	NA	Intergenic	Intergenic	10650	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
143951	chr20	32817871	32818300	+	0	NA	Intergenic	Intergenic	-1869	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
62965	chr13	112288121	112288450	+	0	NA	Intergenic	Intergenic	-15285	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
3722	chr1	16619871	16620400	+	0	NA	intron (NR_026752, intron 5 of 6)	L2c|LINE|L2	-6571	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
59286	chr13	24253071	24253230	+	0	NA	non-coding (NR_046531, exon 2 of 3)	non-coding (NR_046531, exon 2 of 3)	1289	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
116878	chr19	18663001	18663430	+	0	NA	intron (NM_001345982, intron 2 of 3)	intron (NM_001345982, intron 2 of 3)	18577	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
233452	chr9	137636851	137637400	+	0	NA	intron (NM_001354612, intron 1 of 8)	AluY|SINE|Alu	18120	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
11697	chr1	91854021	91854280	+	0	NA	intron (NR_036634, intron 2 of 17)	L1MA8|LINE|L1	32001	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
8033	chr1	38049651	38049950	+	0	NA	intron (NR_168386, intron 1 of 4)	MIRb|SINE|MIR	2666	NR_168387	105378653		NR_168386		MIR3659HG	-	MIR3659 host gene	ncRNA
163247	chr3	50277951	50278250	+	0	NA	promoter-TSS (NM_001304385)	promoter-TSS (NM_001304385)	-987	NM_153215	132228		NM_153215	ENSG00000179564	LSMEM2	C3orf45	leucine rich single-pass membrane protein 2	protein-coding
89365	chr16	88779451	88780490	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	5250	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
38884	chr11	47390971	47391130	+	0	NA	Intergenic	Intergenic	-9920	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
153950	chr22	30347221	30347680	+	0	NA	intron (NM_005877, intron 2 of 15)	intron (NM_005877, intron 2 of 15)	-9174	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
143601	chr20	31709071	31709430	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-12257	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
170400	chr3	185280801	185281030	+	0	NA	Intergenic	Intergenic	-2046	NM_001242314	9175		NM_004721	ENSG00000073803	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
62990	chr13	112307351	112308000	+	0	NA	Intergenic	Intergenic	-5792	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
44970	chr11	116853431	116854380	+	0	NA	intron (NM_001281748, intron 21 of 24)	intron (NM_001281748, intron 21 of 24)	-15955	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
59073	chr13	20902171	20903400	+	0	NA	promoter-TSS (NM_022459)	promoter-TSS (NM_022459)	-11	NM_022459	64328		NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
163323	chr3	50368571	50368730	+	0	NA	TTS (NR_111912)	TTS (NR_111912)	3287	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
230220	chr9	127855821	127856280	+	0	NA	Intergenic	L2c|LINE|L2	-1277	NM_000118	2022		NM_000118	ENSG00000106991	ENG	END|HHT1|ORW1	endoglin	protein-coding
143865	chr20	32543821	32544080	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	33991	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
141312	chr2	240451251	240451750	+	0	NA	intron (NR_161169, intron 1 of 2)	intron (NR_161169, intron 1 of 2)	-4501	NR_029702	406941		NR_029702	ENSG00000207611	MIR149	MIRN149|mir-149	microRNA 149	ncRNA
37053	chr11	12221921	12222800	+	0	NA	intron (NR_144415, intron 9 of 26)	intron (NR_144415, intron 9 of 26)	58677	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
182082	chr5	55989851	55990150	+	0	NA	intron (NR_157112, intron 1 of 17)	intron (NR_157112, intron 1 of 17)	4963	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
164695	chr3	67655201	67657630	+	0	NA	intron (NR_109992, intron 1 of 6)	MER4A1|LTR|ERV1	1718	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
48039	chr12	6960371	6962400	+	0	NA	TTS (NM_080549)	TTS (NM_080549)	-1860	NR_135032	105369635		NR_135032	ENSG00000257084	MIR200CHG	U47924.27	MIR200C and MIR141 host gene	ncRNA
188557	chr5	156942071	156942400	+	0	NA	intron (NM_001146726, intron 4 of 7)	intron (NM_001146726, intron 4 of 7)	20991	NM_001146726	91937		NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T cell immunoglobulin and mucin domain containing 4	protein-coding
219356	chr8	70335501	70335700	+	0	NA	intron (NM_001321703, intron 1 of 22)	L1MB2|LINE|L1	67790	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
17115	chr1	156159771	156159930	+	0	NA	intron (NM_001370567, intron 5 of 13)	AluJb|SINE|Alu	5302	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
32250	chr10	101858421	101859150	+	0	NA	intron (NM_024541, intron 24 of 25)	intron (NM_024541, intron 24 of 25)	-14865	NM_173197	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
176069	chr4	82739321	82739600	+	0	NA	intron (NM_024906, intron 1 of 3)	intron (NM_024906, intron 1 of 3)	13970	NR_030301	693160		NR_030301	ENSG00000207746	MIR575	MIRN575|hsa-mir-575	microRNA 575	ncRNA
40070	chr11	62759851	62760500	+	0	NA	Intergenic	Intergenic	-1405	NM_002696	5436		NM_002696	ENSG00000168002	POLR2G	RPB19|RPB7|hRPB19|hsRPB7	RNA polymerase II subunit G	protein-coding
31527	chr10	96835801	96836400	+	0	NA	intron (NM_032440, intron 2 of 7)	intron (NM_032440, intron 2 of 7)	3155	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
148382	chr20	63897721	63898180	+	0	NA	intron (NM_025219, intron 1 of 4)	intron (NM_025219, intron 1 of 4)	2824	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
229036	chr9	114325071	114325830	+	0	NA	intron (NM_000607, intron 5 of 5)	intron (NM_000607, intron 5 of 5)	2352	NM_000607	5004		NM_000607	ENSG00000229314	ORM1	A1AG1|AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
84277	chr16	30068501	30069350	+	0	NA	exon (NM_001243177, exon 6 of 10)	exon (NM_001243177, exon 6 of 10)	3165	NM_184041	226		NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase, fructose-bisphosphate A	protein-coding
195361	chr6	36676271	36676730	+	0	NA	promoter-TSS (NM_001374509)	promoter-TSS (NM_001374509)	37	NM_001291549	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
43213	chr11	75431501	75431730	+	0	NA	promoter-TSS (NM_001039548)	promoter-TSS (NM_001039548)	-986	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
100040	chr17	58005171	58005780	+	0	NA	non-coding (NR_034041, exon 3 of 4)	non-coding (NR_034041, exon 3 of 4)	1771	NM_001078166	6426		NM_006924	ENSG00000136450	SRSF1	ASF|NEDFBA|SF2|SF2p33|SFRS1|SRp30a	serine and arginine rich splicing factor 1	protein-coding
210541	chr7	100269101	100269600	+	0	NA	intron (NR_166147, intron 1 of 4)	AluSp|SINE|Alu	2855	NR_028038	352954		NM_178831	ENSG00000291122	CASTOR3P	CASTOR3|GATS|STAG3OS	CASTOR family member 3, pseudogene	pseudo
158757	chr3	9388051	9388350	+	0	NA	TTS (NR_027007)	TTS (NR_027007)	8423	NR_132781	440944		NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
169687	chr3	172042671	172042830	+	0	NA	intron (NM_001135095, intron 1 of 25)	MER3|DNA|hAT-Charlie	2219	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
85782	chr16	56941851	56942330	+	0	NA	intron (NM_014685, intron 6 of 7)	intron (NM_014685, intron 6 of 7)	9948	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
97848	chr17	44966951	44967050	+	0	NA	intron (NM_006688, intron 1 of 1)	intron (NM_006688, intron 1 of 1)	1303	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
125515	chr2	12727421	12727680	+	0	NA	intron (NM_021643, intron 2 of 2)	intron (NM_021643, intron 2 of 2)	-9817	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
102873	chr17	76510751	76511050	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-9473	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
196514	chr6	43725051	43726300	+	0	NA	Intergenic	Intergenic	-37863	NM_001193343	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
52449	chr12	55933421	55933680	+	0	NA	intron (NM_001351040, intron 1 of 22)	intron (NM_001351040, intron 1 of 22)	1522	NM_001351034	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
221790	chr8	127962121	127962380	+	0	NA	intron (NR_003367, intron 3 of 8)	AluSc|SINE|Alu	1617	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
97141	chr17	42556121	42556950	+	0	NA	Intergenic	Intergenic	-1733	NR_144402	108783654		NR_144402	ENSG00000266962	HSD17B1-AS1	-	HSD17B1 antisense RNA 1	ncRNA
70912	chr14	104094571	104095180	+	0	NA	intron (NM_001080464, intron 3 of 15)	intron (NM_001080464, intron 3 of 15)	9175	NM_001080464	374569		NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT|LYSOLP|hASNase1	asparaginase	protein-coding
221461	chr8	124449051	124449350	+	0	NA	Intergenic	MER51A|LTR|ERV1	-1620	NM_017956	55039		NM_017956	ENSG00000183665	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog	protein-coding
95735	chr17	38586101	38586400	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	19702	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
53255	chr12	62640751	62641350	+	0	NA	Intergenic	Intergenic	37364	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
215421	chr7	157623501	157623900	+	0	NA	intron (NM_130842, intron 13 of 21)	intron (NM_130842, intron 13 of 21)	-49278	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
143739	chr20	32357451	32359490	+	0	NA	promoter-TSS (NM_001363734)	promoter-TSS (NM_001363734)	126	NM_001164603	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
144259	chr20	34539771	34540130	+	0	NA	intron (NM_001382366, intron 3 of 3)	AluJb|SINE|Alu	-6894	NM_181509	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
234075	chrX	8783001	8783400	+	0	NA	Intergenic	Intergenic	18137	NM_001171186	171482		NM_174951	ENSG00000183304	FAM9A	TEX39A	family with sequence similarity 9 member A	protein-coding
235473	chrX	46627721	46627980	+	0	NA	intron (NM_001257291, intron 14 of 16)	intron (NM_001257291, intron 14 of 16)	54085	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
176363	chr4	88523071	88524280	+	0	NA	promoter-TSS (NR_134662)	promoter-TSS (NR_134662)	101	NM_001042616	84992		NM_001042616	ENSG00000255072	PIGY	HPMRS6|PIG-Y	phosphatidylinositol glycan anchor biosynthesis class Y	protein-coding
167489	chr3	129168571	129169100	+	0	NA	3' UTR (NM_001127192, exon 5 of 5)	3' UTR (NM_001127192, exon 5 of 5)	-7605	NM_001204890	100534599		NM_001204890	ENSG00000261796	ISY1-RAB43	ISY1	ISY1-RAB43 readthrough	protein-coding
149040	chr21	14864521	14864830	+	0	NA	intron (NR_146322, intron 1 of 3)	intron (NR_146322, intron 1 of 3)	53993	NR_146322	107987295		NR_146322		ASMER1	ASMER-1|LINC02246	adipocyte associated metabolic related lncRNA 1	ncRNA
81999	chr16	11907051	11907150	+	0	NA	intron (NM_001130007, intron 1 of 14)	intron (NM_001130007, intron 1 of 14)	8856	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
50898	chr12	49276671	49277000	+	0	NA	Intergenic	Intergenic	11753	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
85991	chr16	57449171	57449330	+	0	NA	intron (NM_020312, intron 1 of 8)	MER67A|LTR|ERV1	-1722	NM_001308347	57019		NM_020313	ENSG00000005194	CIAPIN1	Anamorsin|CIAE2|DRE2|PRO0915	cytokine induced apoptosis inhibitor 1	protein-coding
72730	chr15	38696121	38697230	+	0	NA	promoter-TSS (NR_160786)	promoter-TSS (NR_160786)	77	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
199610	chr6	119330671	119330830	+	0	NA	intron (NM_005907, intron 2 of 12)	L2b|LINE|L2	19011	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
86170	chr16	57801101	57801580	+	0	NA	intron (NM_001318710, intron 1 of 19)	intron (NM_001318710, intron 1 of 19)	1151	NM_001130100	3801		NM_005550	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
228808	chr9	111914901	111915600	+	0	NA	intron (NM_003358, intron 2 of 8)	intron (NM_003358, intron 2 of 8)	-16850	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
4584	chr1	22073071	22073230	+	0	NA	intron (NM_044472, intron 1 of 5)	intron (NM_044472, intron 1 of 5)	20441	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
22890	chr1	225843771	225844500	+	0	NA	intron (NM_001378427, intron 7 of 8)	MIRb|SINE|MIR	18781	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
222414	chr8	134525321	134525740	+	0	NA	intron (NM_020863, intron 12 of 15)	intron (NM_020863, intron 12 of 15)	-72541	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
225883	chr9	39663071	39663330	+	0	NA	Intergenic	AluJb|SINE|Alu	146959	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
151659	chr22	17058001	17058400	+	0	NA	non-coding (NR_015352, exon 4 of 4)	non-coding (NR_015352, exon 4 of 4)	21630	NR_152826	100130418		NR_015352		CECR7	CYCL|SAHL1	cat eye syndrome chromosome region, candidate 7	ncRNA
74012	chr15	52164521	52165030	+	0	NA	intron (NM_016194, intron 3 of 12)	L1PA11|LINE|L1	14916	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
98313	chr17	46249901	46250300	+	0	NA	Intergenic	AluSz6|SINE|Alu	-24733	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
223123	chr8	143473021	143473280	+	0	NA	intron (NM_015117, intron 5 of 11)	intron (NM_015117, intron 5 of 11)	33098	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
163029	chr3	49809671	49810030	+	0	NA	exon (NM_003335, exon 15 of 24)	exon (NM_003335, exon 15 of 24)	-3605	NR_049825	100847079		NR_049825	ENSG00000283726	MIR5193	mir-5193	microRNA 5193	ncRNA
50191	chr12	46179921	46180730	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	86191	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
179317	chr4	180058321	180058580	+	0	NA	Intergenic	CpG	1100699	NR_033918	728081		NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
169719	chr3	172137951	172138280	+	0	NA	intron (NM_022763, intron 3 of 25)	intron (NM_022763, intron 3 of 25)	97584	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
22865	chr1	225554271	225554530	+	0	NA	intron (NM_001377481, intron 3 of 15)	intron (NM_001377481, intron 3 of 15)	98723	NM_018212	55740		NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	ENAH actin regulator	protein-coding
78905	chr15	101135421	101135900	+	0	NA	Intergenic	Intergenic	116388	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
67737	chr14	73570861	73571630	+	0	NA	intron (NM_006821, intron 1 of 2)	intron (NM_006821, intron 1 of 2)	2032	NM_006821	10965		NM_006821	ENSG00000119673	ACOT2	CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128	acyl-CoA thioesterase 2	protein-coding
24580	chr1	245155401	245155680	+	0	NA	intron (NM_018012, intron 1 of 14)	CpG-2495	555	NM_018012	55083		NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
151909	chr22	18967571	18968100	+	0	NA	Intergenic	Intergenic	-2663	NR_045121	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
159041	chr3	11291021	11291950	+	0	NA	intron (NM_001349234, intron 2 of 19)	MIR|SINE|MIR	19088	NM_001144912	10533		NM_006395	ENSG00000197548	ATG7	APG7-LIKE|APG7L|GSA7|SCAR31	autophagy related 7	protein-coding
116907	chr19	18782371	18782730	+	0	NA	TTS (NM_000095)	TTS (NM_000095)	8755	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
40463	chr11	64223171	64223750	+	0	NA	TTS (NM_031472)	TTS (NM_031472)	2409	NM_001160393	83707		NM_031472	ENSG00000149743	TRPT1	-	tRNA phosphotransferase 1	protein-coding
61345	chr13	50894571	50894730	+	0	NA	intron (NR_046552, intron 1 of 2)	MER50|LTR|ERV1	-15028	NM_001142279	79621		NM_024570	ENSG00000136104	RNASEH2B	AGS2|DLEU8	ribonuclease H2 subunit B	protein-coding
131743	chr2	98450921	98451680	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	5290	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
170622	chr3	187019901	187021100	+	0	NA	intron (NM_173216, intron 2 of 7)	L2a|LINE|L2	-1355	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
208744	chr7	73517721	73517980	+	0	NA	intron (NM_001370402, intron 1 of 18)	intron (NM_001370402, intron 1 of 18)	4443	NM_001370402	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
147202	chr20	57352451	57352780	+	0	NA	intron (NM_001015885, intron 1 of 11)	intron (NM_001015885, intron 1 of 11)	1053	NM_001015885	8480		NM_003610	ENSG00000101146	RAE1	Gle2|MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1	ribonucleic acid export 1	protein-coding
624	chr1	1326851	1327380	+	0	NA	intron (NM_001029885, intron 2 of 2)	intron (NM_001029885, intron 2 of 2)	2313	NM_001029885	80772		NM_001029885	ENSG00000224051	CPTP	GLTPD1	ceramide-1-phosphate transfer protein	protein-coding
206028	chr7	26686271	26686780	+	0	NA	intron (NM_003930, intron 10 of 12)	intron (NM_003930, intron 10 of 12)	48654	NR_161201	285941		NR_161201	ENSG00000222004	LINC02860	C7orf71	long intergenic non-protein coding RNA 2860	ncRNA
68016	chr14	75128671	75129230	+	0	NA	Intergenic	Intergenic	-1902	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
233920	chrX	1681801	1682480	+	0	NA	Intergenic	(CTTTCT)n|Simple_repeat|Simple_repeat	67007	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
181862	chr5	53483771	53484050	+	0	NA	intron (NM_006350, intron 3 of 5)	intron (NM_006350, intron 3 of 5)	3281	NM_006350	10468		NM_006350	ENSG00000134363	FST	FS	follistatin	protein-coding
139778	chr2	230222451	230223350	+	0	NA	intron (NM_001378444, intron 1 of 19)	L1ME2|LINE|L1	2736	NM_001185015	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
209562	chr7	77349101	77349300	+	0	NA	intron (NM_001350897, intron 18 of 29)	intron (NM_001350897, intron 18 of 29)	-65998	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
126186	chr2	26740721	26741680	+	0	NA	Intergenic	Intergenic	-23084	NM_017877	54978		NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
161138	chr3	38647651	38647950	+	0	NA	intron (NM_198056, intron 1 of 27)	intron (NM_198056, intron 1 of 27)	1887	NM_001354701	6331		NM_000335	ENSG00000183873	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	sodium voltage-gated channel alpha subunit 5	protein-coding
109251	chr19	520001	520400	+	0	NA	TTS (NM_033513)	TTS (NM_033513)	-11560	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
183315	chr5	76682471	76682630	+	0	NA	intron (NM_001285462, intron 16 of 23)	intron (NM_001285462, intron 16 of 23)	-29853	NR_028375	100302746		NR_028375		NCRUPAR	NCRNA00193|ncR-uPAR	non-protein coding RNA, upstream of F2R/PAR1	ncRNA
226680	chr9	75087521	75089250	+	0	NA	promoter-TSS (NM_001330679)	promoter-TSS (NM_001330679)	-129	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
28304	chr10	46228551	46229300	+	0	NA	intron (NR_103828, intron 2 of 2)	L1PA17|LINE|L1	40683	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
35407	chr11	1393421	1393800	+	0	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	3676	NM_003957	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
149454	chr21	31659271	31660780	+	0	NA	intron (NM_000454, intron 1 of 4)	CpG	332	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
116657	chr19	18343271	18343900	+	0	NA	intron (NM_001329471, intron 2 of 4)	intron (NM_001329471, intron 2 of 4)	2987	NM_017712	54858		NM_017712	ENSG00000130517	PGPEP1	PAP-I|PGI|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
179536	chr4	184967401	184968030	+	0	NA	Intergenic	Intergenic	-29275	NR_039660	100616111		NR_039660	ENSG00000263458	MIR4455	-	microRNA 4455	ncRNA
70657	chr14	103055071	103055230	+	0	NA	intron (NM_006035, intron 1 of 36)	AluSx|SINE|Alu	2399	NM_006035	9578		NM_006035	ENSG00000198752	CDC42BPB	CHOCNS|MRCKB	CDC42 binding protein kinase beta	protein-coding
79548	chr16	952771	952950	+	0	NA	intron (NM_001352017, intron 2 of 11)	intron (NM_001352017, intron 2 of 11)	18124	NM_022773	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
34693	chr10	133392971	133393130	+	0	NA	Intergenic	AluSx|SINE|Alu	-1107	NM_138384	92170		NM_138384	ENSG00000148824	MTG1	GTP|GTPBP7	mitochondrial ribosome associated GTPase 1	protein-coding
127818	chr2	44935701	44936480	+	0	NA	intron (NR_147194, intron 1 of 2)	intron (NR_147194, intron 1 of 2)	2798	NR_147194	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
153422	chr22	25007501	25007700	+	0	NA	Intergenic	MER66B|LTR|ERV1	-20374	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
12791	chr1	109785671	109786030	+	0	NA	Intergenic	Intergenic	-21927	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
226569	chr9	72478101	72478500	+	0	NA	Intergenic	Intergenic	-43308	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
179811	chr5	441021	441480	+	0	NA	TTS (NR_126522)	TTS (NR_126522)	1910	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
209475	chr7	76550821	76551330	+	0	NA	intron (NR_029411, intron 1 of 2)	AluSz6|SINE|Alu	1734	NR_029411	100133091		NR_029411	ENSG00000290873	LINC03009	-	long intergenic non-protein coding RNA 3009	ncRNA
229584	chr9	123359051	123359580	+	0	NA	intron (NM_173689, intron 1 of 12)	intron (NM_173689, intron 1 of 12)	3118	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
59108	chr13	21176051	21177200	+	0	NA	promoter-TSS (NM_145061)	promoter-TSS (NM_145061)	-33	NM_024026	78988		NM_024026	ENSG00000173141	MRPL57	MRP63|bMRP63|mL63	mitochondrial ribosomal protein L57	protein-coding
59460	chr13	26011101	26011300	+	0	NA	intron (NM_016529, intron 35 of 36)	MLT1B|LTR|ERVL-MaLR	40816	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
89020	chr16	88221171	88221350	+	0	NA	Intergenic	Intergenic	26979	NR_110944	101928880		NR_110944	ENSG00000260420	LINC02182	LA16c-444G7.2	long intergenic non-protein coding RNA 2182	ncRNA
195867	chr6	41547451	41548150	+	0	NA	promoter-TSS (NR_126416)	promoter-TSS (NR_126416)	-255	NR_126416	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
14523	chr1	144844301	144844700	+	0	NA	intron (NR_104189, intron 2 of 3).2	ERVL-B4-int|LTR|ERVL	126329	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
166216	chr3	112074851	112075450	+	0	NA	intron (NM_001366279, intron 12 of 15)	intron (NM_001366279, intron 12 of 15)	-11185	NM_001171747	79669		NM_024616	ENSG00000114529	C3orf52	HYPT15|TTMP	chromosome 3 open reading frame 52	protein-coding
208643	chr7	73003971	73004330	+	0	NA	intron (NR_040582, intron 1 of 8)	AluSx1|SINE|Alu	1793	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
131644	chr2	97588971	97590400	+	0	NA	exon (NM_025190, exon 1 of 44)	exon (NM_025190, exon 1 of 44)	192	NM_001353337	57730		NM_020970	ENSG00000196912	ANKRD36B	KIAA1641	ankyrin repeat domain 36B	protein-coding
140251	chr2	232137451	232137950	+	0	NA	intron (NM_001257281, intron 8 of 13)	intron (NM_001257281, intron 8 of 13)	-34953	NR_030288	693147		NR_030288	ENSG00000207626	MIR562	MIRN562|hsa-mir-562	microRNA 562	ncRNA
212329	chr7	127392101	127393800	+	0	NA	promoter-TSS (NM_176814)	promoter-TSS (NM_176814)	-242	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
150250	chr21	41425801	41427350	+	0	NA	intron (NM_001178046, intron 1 of 14)	CpG	336	NM_002462	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
54864	chr12	95546601	95547000	+	0	NA	intron (NM_001347936, intron 1 of 6)	intron (NM_001347936, intron 1 of 6)	1438	NM_001278393	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
198593	chr6	107701321	107701750	+	0	NA	TTS (NM_198081)	TTS (NM_198081)	30615	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
100454	chr17	61399821	61400400	+	0	NA	promoter-TSS (NR_125749)	promoter-TSS (NR_125749)	267	NM_005994	6909		NM_005994	ENSG00000121068	TBX2	VETD	T-box transcription factor 2	protein-coding
53614	chr12	68137201	68137650	+	0	NA	Intergenic	Intergenic	22315	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
6062	chr1	27142151	27143780	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	12160	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
59801	chr13	30371521	30372730	+	0	NA	intron (NR_024464, intron 2 of 4)	intron (NR_024464, intron 2 of 4)	1789	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
223770	chr8	144532721	144533850	+	0	NA	exon (NM_001308208, exon 8 of 11)	exon (NM_001308208, exon 8 of 11)	-4174	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
59495	chr13	26698621	26698950	+	0	NA	Intergenic	Intergenic	62001	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
91067	chr17	3032821	3033280	+	0	NA	intron (NM_001100398, intron 23 of 23)	intron (NM_001100398, intron 23 of 23)	30557	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
157082	chr22	42613971	42616680	+	0	NA	promoter-TSS (NM_178136)	promoter-TSS (NM_178136)	80	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
214549	chr7	150551451	150551950	+	0	NA	Intergenic	L1PREC2|LINE|L1	-15670	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
160947	chr3	36910801	36911200	+	0	NA	intron (NM_001329998, intron 1 of 23)	AluSq2|SINE|Alu	34054	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
12982	chr1	110901521	110901780	+	0	NA	Intergenic	AluSx|SINE|Alu	28502	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
177921	chr4	131727051	131727750	+	0	NA	Intergenic	SST1|Satellite|centr	-37438	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
192469	chr6	24927001	24928750	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	8085	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
162691	chr3	48947151	48947450	+	0	NA	intron (NM_001349227, intron 3 of 16)	AluSp|SINE|Alu	-27915	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
129928	chr2	73680351	73680450	+	0	NA	intron (NR_003683, intron 6 of 6)	intron (NR_003683, intron 6 of 6)	20940	NR_132338	51471		NM_016347		NAT8B	CML2|Hcml2|NAT8BP	N-acetyltransferase 8B (putative, gene/pseudogene)	pseudo
53775	chr12	68804801	68805000	+	0	NA	non-coding (NR_073494, exon 1 of 1)	non-coding (NR_073494, exon 1 of 1)	594	NR_073494	100130075		NR_073494		SZRD1P1	-	SZRD1 pseudogene 1	pseudo
137675	chr2	197461501	197461700	+	0	NA	intron (NM_001320819, intron 2 of 4)	intron (NM_001320819, intron 2 of 4)	7836	NM_001320819	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
128238	chr2	54455521	54456330	+	0	NA	promoter-TSS (NM_003128)	promoter-TSS (NM_003128)	-402	NM_003128	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
212023	chr7	114926001	114926200	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	3946	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
72121	chr15	28956001	28956280	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	22136	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
210325	chr7	99492771	99493330	+	0	NA	TTS (NM_001345967)	TTS (NM_001345967)	7231	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
232071	chr9	133478621	133479850	+	0	NA	promoter-TSS (NM_001145099).2	promoter-TSS (NM_001145099).2	-136	NM_001145099	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
98235	chr17	46159901	46160500	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	32582	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
84757	chr16	30976371	30976900	+	0	NA	intron (NM_014712, intron 13 of 18)	intron (NM_014712, intron 13 of 18)	-8572	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
176110	chr4	83034151	83035700	+	0	NA	promoter-TSS (NM_001258006)	promoter-TSS (NM_001258006)	-258	NM_001330727	51138		NM_016129	ENSG00000138663	COPS4	CSN4|SGN4	COP9 signalosome subunit 4	protein-coding
5972	chr1	26924451	26924880	+	0	NA	intron (NM_006600, intron 2 of 8)	AluSg4|SINE|Alu	2922	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
33584	chr10	119501851	119503450	+	0	NA	intron (NM_002925, intron 4 of 4)	intron (NM_002925, intron 4 of 4)	33883	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
37786	chr11	32433051	32433550	+	0	NA	intron (NR_160306, intron 1 of 9)	intron (NR_160306, intron 1 of 9)	-2218	NR_120549	51352		NM_015855	ENSG00000183242	WT1-AS	WIT-1|WIT1|WT1-AS1|WT1AS	WT1 antisense RNA	ncRNA
108729	chr18	77091451	77091850	+	0	NA	intron (NM_001025100, intron 2 of 3)	(CA)n|Simple_repeat|Simple_repeat	41133	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
238727	chrX	154209521	154210780	+	0	NA	Intergenic	AluJb|SINE|Alu	-9584	NM_000513	2652		NM_000513	ENSG00000268221	OPN1MW	CBBM|CBD|COD5|GCP|GOP|OPN1MW1	opsin 1, medium wave sensitive	protein-coding
32770	chr10	104336051	104336550	+	0	NA	intron (NM_001272013, intron 1 of 1)	intron (NM_001272013, intron 1 of 1)	2165	NM_001272013	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
190465	chr5	180087001	180087400	+	0	NA	Intergenic	AluJr4|SINE|Alu	-15441	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
165706	chr3	102179651	102179750	+	0	NA	Intergenic	Intergenic	15995	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
56123	chr12	110826651	110827150	+	0	NA	Intergenic	Intergenic	-20087	NM_001286244	160762		NM_152591	ENSG00000173093	CCDC63	ODA5	coiled-coil domain containing 63	protein-coding
88282	chr16	83926401	83926880	+	0	NA	3' UTR (NM_012213, exon 5 of 5)	3' UTR (NM_012213, exon 5 of 5)	-26600	NM_182981	29948		NM_013370	ENSG00000140961	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
72828	chr15	40127051	40127150	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-18221	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
94805	chr17	31288501	31289100	+	0	NA	intron (NM_001042492, intron 36 of 57)	AluSx1|SINE|Alu	8439	NM_002544	4974		NM_002544	ENSG00000126861	OMG	OMGP	oligodendrocyte myelin glycoprotein	protein-coding
94491	chr17	29285971	29287250	+	0	NA	exon (NM_020772, exon 2 of 4)	exon (NM_020772, exon 2 of 4)	7538	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
17534	chr1	156779471	156779830	+	0	NA	intron (NM_005973, intron 1 of 6)	AluSx1|SINE|Alu	12115	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
120397	chr19	43747501	43748430	+	0	NA	intron (NM_019108, intron 3 of 13)	intron (NM_019108, intron 3 of 13)	6997	NM_019108	56006		NM_019108	ENSG00000105771	SMG9	C19orf61|F17127_1|HBMS|NEDITPO	SMG9 nonsense mediated mRNA decay factor	protein-coding
13736	chr1	116815221	116815730	+	0	NA	Intergenic	L1ME4a|LINE|L1	61045	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
136248	chr2	174620821	174621080	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	13655	NM_001375837	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
228977	chr9	113527601	113528000	+	0	NA	intron (NM_144488, intron 18 of 25)	intron (NM_144488, intron 18 of 25)	-8811	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
114524	chr19	12825401	12826050	+	0	NA	exon (NM_001270444, exon 6 of 6)	exon (NM_001270444, exon 6 of 6)	4691	NM_001080997	83546		NM_031429	ENSG00000132026	RTBDN	-	retbindin	protein-coding
221338	chr8	123156051	123156900	+	0	NA	intron (NM_001363151, intron 19 of 19)	ERVL-E-int|LTR|ERVL	-22572	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
211058	chr7	102462651	102463050	+	0	NA	intron (NM_017621, intron 1 of 2)	L1MB2|LINE|L1	2013	NM_017621	54784		NM_017621	ENSG00000160993	ALKBH4	ABH4	alkB homolog 4, lysine demethylase	protein-coding
107171	chr18	35478351	35478850	+	0	NA	intron (NM_001308064, intron 3 of 4)	intron (NM_001308064, intron 3 of 4)	19008	NM_001308064	125476		NM_194281	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
52813	chr12	56840051	56840150	+	0	NA	Intergenic	Intergenic	76776	NM_003725	8630		NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid 17-beta dehydrogenase 6	protein-coding
56788	chr12	120194221	120195500	+	0	NA	promoter-TSS (NM_006836)	promoter-TSS (NM_006836)	-145	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
76118	chr15	72516651	72516950	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	42470	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
190572	chr5	180832501	180833630	+	0	NA	intron (NR_045679, intron 2 of 2)	intron (NR_045679, intron 2 of 2)	-1447	NR_045680	100859930		NR_045680	ENSG00000278970	HEIH	HCCAT2|LINC-HEIH|LINC00848|lncRNA-HEIH	hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA	ncRNA
205559	chr7	20669071	20669230	+	0	NA	intron (NM_178559, intron 5 of 18)	SVA_E|Retroposon|SVA	21820	NM_001163993	340273		NM_178559	ENSG00000004846	ABCB5	ABCB5alpha|ABCB5beta|EST422562	ATP binding cassette subfamily B member 5	protein-coding
195438	chr6	36962701	36963400	+	0	NA	exon (NM_001199159, exon 6 of 8)	exon (NM_001199159, exon 6 of 8)	8312	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
135557	chr2	165016801	165017000	+	0	NA	Intergenic	Intergenic	-61375	NM_173512	151258		NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
76811	chr15	77040421	77041700	+	0	NA	TTS (NM_198902)	TTS (NM_198902)	30049	NM_005724	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
21488	chr1	205681471	205681830	+	0	NA	Intergenic	Intergenic	-1141	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
112344	chr19	5936071	5936430	+	0	NA	intron (NM_003624, intron 5 of 16)	intron (NM_003624, intron 5 of 16)	21996	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
231629	chr9	131588701	131588900	+	0	NA	intron (NM_001377935, intron 20 of 26)	intron (NM_001377935, intron 20 of 26)	43277	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
101627	chr17	68212051	68212550	+	0	NA	intron (NM_001346471, intron 1 of 6)	AluJo|SINE|Alu	6171	NM_001346472	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
43335	chr11	76494871	76495530	+	0	NA	intron (NM_001300942, intron 9 of 21)	intron (NM_001300942, intron 9 of 21)	50175	NM_020193	56946		NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY transcriptional repressor, BRCA2 interacting	protein-coding
214988	chr7	152144521	152145280	+	0	NA	intron (NM_170606, intron 54 of 58)	intron (NM_170606, intron 54 of 58)	69863	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
42855	chr11	73249051	73249550	+	0	NA	Intergenic	AluJr4|SINE|Alu	-15205	NM_001277205	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
124899	chr2	8473571	8473800	+	0	NA	Intergenic	Intergenic	110107	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
71721	chr15	20352021	20352280	+	0	NA	Intergenic	U13_|snRNA|snRNA	69406	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
22423	chr1	220093621	220094880	+	0	NA	exon (NM_018060, exon 1 of 23)	exon (NM_018060, exon 1 of 23)	118	NM_018060	55699		NM_018060	ENSG00000067704	IARS2	CAGSSS|ILERS	isoleucyl-tRNA synthetase 2, mitochondrial	protein-coding
75729	chr15	68224271	68224430	+	0	NA	intron (NM_017882, intron 1 of 6)	AluSz6|SINE|Alu	5378	NM_017882	54982		NM_017882	ENSG00000128973	CLN6	CLN4A|CLN6A|HsT18960|nclf	CLN6 transmembrane ER protein	protein-coding
4707	chr1	23165621	23166600	+	0	NA	intron (NM_033631, intron 1 of 4)	intron (NM_033631, intron 1 of 4)	2746	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
205385	chr7	15016071	15016230	+	0	NA	Intergenic	Intergenic	-41292	NM_001350717	1607		NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
197545	chr6	79072151	79073050	+	0	NA	intron (NM_017934, intron 4 of 39)	AluJb|SINE|Alu	5654	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
187086	chr5	140214801	140215000	+	0	NA	intron (NM_032412, intron 2 of 2)	intron (NM_032412, intron 2 of 2)	39712	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
152534	chr22	20981821	20983480	+	0	NA	intron (NM_006767, intron 1 of 20)	CpG	353	NM_006767	8216		NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|NS2|SWNTS2	leucine zipper like post translational regulator 1	protein-coding
37318	chr11	14778001	14778600	+	0	NA	intron (NM_001363570, intron 3 of 16)	L1PA5|LINE|L1	113371	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
188500	chr5	154850171	154850330	+	0	NA	intron (NM_032385, intron 1 of 8)	intron (NM_032385, intron 1 of 8)	353	NM_032385	10826		NM_016348	ENSG00000170271	FAXDC2	C5orf4	fatty acid hydroxylase domain containing 2	protein-coding
139495	chr2	224528271	224528730	+	0	NA	intron (NM_003590, intron 3 of 15)	MLT1D|LTR|ERVL-MaLR	41455	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
97647	chr17	44197801	44198700	+	0	NA	intron (NM_001382309, intron 1 of 12)	intron (NM_001382309, intron 1 of 12)	1119	NM_001382315	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
45804	chr11	119340651	119340950	+	0	NA	promoter-TSS (NM_001278431)	promoter-TSS (NM_001278431)	83	NM_001278431	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
8382	chr1	40379471	40380130	+	0	NA	intron (NM_001198978, intron 1 of 9)	AluSx1|SINE|Alu	5167	NM_001198978	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
141737	chr2	241875471	241876150	+	0	NA	Intergenic	LTR13|LTR|ERVK	-5553	NR_110220	101927289		NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
163296	chr3	50335451	50336070	+	0	NA	intron (NM_001206957, intron 1 of 4)	AluSz|SINE|Alu	1690	NM_170713	11186		NM_007182	ENSG00000068028	RASSF1	123F2|NORE2A|RASSF1A|RDA32|REH3P21	Ras association domain family member 1	protein-coding
15027	chr1	148337751	148338430	+	0	NA	Intergenic	Intergenic	-3536	NR_049810	100847044		NR_049810	ENSG00000283676	MIR5087	-	microRNA 5087	ncRNA
22375	chr1	218283871	218284030	+	0	NA	Intergenic	AluSz|SINE|Alu	-1343	NM_016052	51018		NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
79455	chr16	723251	725980	+	0	NA	non-coding (NR_165383, exon 8 of 13)	non-coding (NR_165383, exon 8 of 13)	1828	NM_001031737	124093		NM_173476	ENSG00000162004	CCDC78	C16orf25|CNM4|JFP10|hsCCDC78	coiled-coil domain containing 78	protein-coding
31170	chr10	91161751	91163100	+	0	NA	promoter-TSS (NR_046435)	promoter-TSS (NR_046435)	-587	NR_046435	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
236408	chrX	71195871	71196750	+	0	NA	Intergenic	L2c|LINE|L2	-18902	NM_001097642	2705		NM_000166	ENSG00000169562	GJB1	CMTX|CMTX1|CX32	gap junction protein beta 1	protein-coding
4648	chr1	22137451	22138030	+	0	NA	intron (NM_030761, intron 1 of 4)	intron (NM_030761, intron 1 of 4)	5357	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
191574	chr6	12008101	12009300	+	0	NA	Intergenic	Intergenic	-3612	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
36999	chr11	11960351	11961350	+	0	NA	3' UTR (NM_001330208, exon 29 of 29)	3' UTR (NM_001330208, exon 29 of 29)	47789	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
37582	chr11	19279471	19280030	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-38095	NM_001256372	79733		NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
198020	chr6	90127701	90128100	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	168943	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
207695	chr7	45807801	45808630	+	0	NA	TTS (NR_146388)	TTS (NR_146388)	2986	NR_146388	730234		NR_146388		LOC730234	-	uncharacterized LOC730234	ncRNA
88966	chr16	87858651	87859350	+	0	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	5104	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
165502	chr3	100210801	100211300	+	0	NA	Intergenic	Intergenic	25226	NR_028357	644444		NR_028357	ENSG00000293379	TMEM30CP	CDC50C|TMEM30C	transmembrane protein 30C, pseudogene	pseudo
122840	chr19	50435371	50435830	+	0	NA	intron (NM_004533, intron 2 of 27)	MIR3|SINE|MIR	2708	NM_004533	4606		NM_004533	ENSG00000086967	MYBPC2	MYBPC|MYBPCF|fsMyBP-C	myosin binding protein C2	protein-coding
65645	chr14	52321271	52321750	+	0	NA	intron (NM_000956, intron 1 of 1)	intron (NM_000956, intron 1 of 1)	7198	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
227058	chr9	83982701	83982900	+	0	NA	intron (NM_024945, intron 1 of 2)	intron (NM_024945, intron 1 of 2)	1995	NM_001358291	80010		NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75	RecQ mediated genome instability 1	protein-coding
136139	chr2	174172901	174173230	+	0	NA	intron (NM_001011708, intron 3 of 9)	MSTB|LTR|ERVL-MaLR	75467	NM_001328688	29789		NM_013341	ENSG00000138430	OLA1	DOC45|GBP45|GTBP9|GTPBP9|PTD004	Obg like ATPase 1	protein-coding
153907	chr22	30310901	30311100	+	0	NA	intron (NM_001204240, intron 1 of 8)	X7A_LINE|LINE|CR1	15941	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
206137	chr7	27739201	27740400	+	0	NA	promoter-TSS (NM_001206902)	promoter-TSS (NM_001206902)	-295	NM_006024	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
148639	chr21	5915571	5916280	+	0	NA	Intergenic	Intergenic	57465	NM_017445	54145		NM_017445	ENSG00000234289	H2BC12L	H2B/s|H2BFS|H2BS1	H2B clustered histone 12 like	protein-coding
71883	chr15	22470251	22471300	+	0	NA	Intergenic	(CCT)n|Simple_repeat|Simple_repeat	11599	NR_036470	100132101		NR_036470		HERC2P7	-	HERC2 pseudogene 7	pseudo
122375	chr19	49386571	49387030	+	0	NA	intron (NR_110729, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	1281	NR_110729	101928295		NR_110729	ENSG00000268686	LOC101928295	-	uncharacterized LOC101928295	ncRNA
176228	chr4	84966651	84966950	+	0	NA	promoter-TSS (NR_152782)	promoter-TSS (NR_152782)	68	NR_152779	404201		NM_205857	ENSG00000180769	WDFY3-AS2	C4orf12|FBI4|NCRNA00247	WDFY3 antisense RNA 2	ncRNA
120073	chr19	42080871	42081030	+	0	NA	exon (NM_001330519, exon 2 of 2)	exon (NM_001330519, exon 2 of 2)	4784	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
183426	chr5	78359801	78361900	+	0	NA	promoter-TSS (NR_105014)	promoter-TSS (NR_105014)	233	NM_004866	9522		NM_004866	ENSG00000085365	SCAMP1	SCAMP|SCAMP37	secretory carrier membrane protein 1	protein-coding
228124	chr9	96652471	96652630	+	0	NA	intron (NM_153698, intron 2 of 5)	L1MA7|LINE|L1	2767	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
13532	chr1	115061101	115061730	+	0	NA	intron (NM_005725, intron 3 of 7)	intron (NM_005725, intron 3 of 7)	27469	NM_001277991	7252		NM_000549	ENSG00000134200	TSHB	TSH-B|TSH-BETA	thyroid stimulating hormone subunit beta	protein-coding
95078	chr17	33233651	33233980	+	0	NA	intron (NM_001094, intron 1 of 9)	(AC)n|Simple_repeat|Simple_repeat	59480	NM_183377	40		NM_001094	ENSG00000108684	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid sensing ion channel subunit 2	protein-coding
170457	chr3	185918601	185919000	+	0	NA	intron (NM_001243879, intron 6 of 7)	AluSz|SINE|Alu	19214	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
161027	chr3	37990101	37990400	+	0	NA	promoter-TSS (NM_001385038)	promoter-TSS (NM_001385038)	-536	NM_015873	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
209798	chr7	87854521	87854980	+	0	NA	intron (NM_018843, intron 4 of 11)	AluY|SINE|Alu	21610	NM_018843	55972		NM_018843	ENSG00000075303	SLC25A40	MCFP	solute carrier family 25 member 40	protein-coding
49428	chr12	24563321	24563780	+	0	NA	Intergenic	Intergenic	-1059	NM_001261414	6660		NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box transcription factor 5	protein-coding
50697	chr12	48919371	48919530	+	0	NA	intron (NM_033124, intron 6 of 7)	AluJr|SINE|Alu	5538	NM_001143781	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
217338	chr8	27596971	27597550	+	0	NA	non-coding (NR_045494, exon 9 of 9)	non-coding (NR_045494, exon 9 of 9)	13491	NR_106902	102465508		NR_106902	ENSG00000284280	MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
186395	chr5	135235451	135235550	+	0	NA	TTS (NR_037895)	TTS (NR_037895)	12677	NR_037895	340073		NR_037895	ENSG00000249647	LINC02900	C5orf66-AS2	long intergenic non-protein coding RNA 2900	ncRNA
16753	chr1	155321771	155322200	+	0	NA	exon (NM_001105204, exon 2 of 10)	exon (NM_001105204, exon 2 of 10)	1091	NM_001105203	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
190776	chr6	510721	510980	+	0	NA	intron (NM_018303, intron 23 of 27)	intron (NM_018303, intron 23 of 27)	119098	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
151866	chr22	18611071	18611230	+	0	NA	exon (NM_015672, exon 1 of 1)	exon (NM_015672, exon 1 of 1)	769	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
30220	chr10	74897251	74897700	+	0	NA	intron (NM_012330, intron 3 of 17).2	intron (NM_012330, intron 3 of 17).2	-15311	NR_134476								
38843	chr11	47323651	47323750	+	0	NA	exon (NM_001376597, exon 30 of 36)	exon (NM_001376597, exon 30 of 36)	29002	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
153657	chr22	28810221	28813050	+	0	NA	Intergenic	Intergenic	-11063	NM_005080	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
87330	chr16	70288421	70290380	+	0	NA	promoter-TSS (NM_001257174)	promoter-TSS (NM_001257174)	106	NM_001605	16		NM_001605	ENSG00000090861	AARS1	AARS|CMT2N|DEE29|EIEE29|HDLS2|TTD8	alanyl-tRNA synthetase 1	protein-coding
79937	chr16	1756351	1756800	+	0	NA	intron (NM_001040439, intron 9 of 30)	AluJr|SINE|Alu	15134	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
1915	chr1	6467351	6467450	+	0	NA	3' UTR (NM_001042664, exon 21 of 21)	3' UTR (NM_001042664, exon 21 of 21)	-1205	NM_148966	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
66259	chr14	61360721	61361600	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	39717	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
106705	chr18	23438701	23439150	+	0	NA	promoter-TSS (NM_032933)	promoter-TSS (NM_032933)	-956	NM_001318834	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
56316	chr12	112666151	112666450	+	0	NA	intron (NM_001347952, intron 1 of 21)	intron (NM_001347952, intron 1 of 21)	28876	NR_031631	100302227		NR_031631	ENSG00000283507	MIR1302-1	MIRN1302-1|hsa-mir-1302-1	microRNA 1302-1	ncRNA
143528	chr20	31561571	31562230	+	0	NA	intron (NM_178580, intron 10 of 12)	MLT1J|LTR|ERVL-MaLR	11363	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
70410	chr14	102013371	102013930	+	0	NA	intron (NM_001376, intron 34 of 77)	L2a|LINE|L2	49077	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
116422	chr19	18010471	18011600	+	0	NA	intron (NM_001286826, intron 7 of 7)	AluSq2|SINE|Alu	2865	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
11898	chr1	93194601	93195000	+	0	NA	intron (NM_206886, intron 6 of 27)	intron (NM_206886, intron 6 of 27)	14076	NM_001378204	343099		NM_206886	ENSG00000122483	CCDC18	NY-SAR-41	coiled-coil domain containing 18	protein-coding
32934	chr10	110301671	110301830	+	0	NA	intron (NM_005871, intron 2 of 5)	intron (NM_005871, intron 2 of 5)	3170	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
228999	chr9	113581501	113582650	+	0	NA	5' UTR (NM_001282922, exon 2 of 8)	5' UTR (NM_001282922, exon 2 of 8)	1147	NM_001282922	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
118888	chr19	38684201	38685000	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	36951	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
199917	chr6	127878121	127878680	+	0	NA	intron (NM_001164687, intron 1 of 5).2	LTR82B|LTR|ERVL	22681	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
63477	chr13	114153871	114154800	+	0	NA	Intergenic	AluJr4|SINE|Alu	-21712	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
115803	chr19	16398921	16399730	+	0	NA	intron (NM_021235, intron 16 of 22)	intron (NM_021235, intron 16 of 22)	72645	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
168324	chr3	141735871	141736030	+	0	NA	Intergenic	Intergenic	-2259	NM_183237	9616		NM_014245	ENSG00000114125	RNF7	CKBBP1|ROC2|SAG|rbx2	ring finger protein 7	protein-coding
120379	chr19	43638271	43638800	+	0	NA	intron (NM_145296, intron 1 of 8)	intron (NM_145296, intron 1 of 8)	1315	NM_145296	199731		NM_145296	ENSG00000105767	CADM4	IGSF4C|NECL4|Necl-4|TSLL2|synCAM4	cell adhesion molecule 4	protein-coding
69797	chr14	99197651	99197950	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	74397	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
40599	chr11	64633721	64634180	+	0	NA	intron (NM_015080, intron 18 of 22)	intron (NM_015080, intron 18 of 22)	9595	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
86527	chr16	67162271	67162430	+	0	NA	intron (NM_018378, intron 2 of 2)	intron (NM_018378, intron 2 of 2)	-1411	NM_001040667	3299		NM_001538	ENSG00000102878	HSF4	CTM|CTRCT5	heat shock transcription factor 4	protein-coding
209766	chr7	87218801	87220100	+	0	NA	exon (NM_024315, exon 1 of 4)	exon (NM_024315, exon 1 of 4)	282	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
105215	chr17	82332401	82334130	+	0	NA	intron (NM_003004, intron 1 of 4)	CpG	501	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
161249	chr3	39237451	39237550	+	0	NA	Intergenic	Intergenic	42536	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
130642	chr2	86107351	86107450	+	0	NA	intron (NM_017952, intron 1 of 23)	intron (NM_017952, intron 1 of 23)	1165	NM_017952	55037		NM_017952	ENSG00000132300	PTCD3	COXPD51|MRP-S39|mS39	pentatricopeptide repeat domain 3	protein-coding
171723	chr3	197946651	197946950	+	0	NA	intron (NM_032263, intron 2 of 11)	intron (NM_032263, intron 2 of 11)	3125	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
237191	chrX	107769801	107770080	+	0	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	5847	NM_198057	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
46403	chr11	126328271	126328430	+	0	NA	intron (NM_014026, intron 2 of 5)	intron (NM_014026, intron 2 of 5)	24290	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
101452	chr17	67448871	67449130	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSx|SINE|Alu	-22489	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
73486	chr15	43695571	43696080	+	0	NA	exon (NM_001321926, exon 4 of 9)	exon (NM_001321926, exon 4 of 9)	1885	NM_001321929	548596		NM_001015001	ENSG00000223572	CKMT1A	CKMT1|U-MtCK|mia-CK	creatine kinase, mitochondrial 1A	protein-coding
151898	chr22	18903901	18904580	+	0	NA	Intergenic	Intergenic	-2080	NM_001368242	8214		NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
111818	chr19	4501271	4501430	+	0	NA	TTS (NM_001367868)	TTS (NM_001367868)	17136	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
179732	chr5	213251	213350	+	0	NA	intron (NM_145265, intron 2 of 2)	CpG	4853	NM_145265	133957		NM_145265	ENSG00000164366	CCDC127	-	coiled-coil domain containing 127	protein-coding
47206	chr12	837421	837680	+	0	NA	intron (NM_018979, intron 4 of 27)	AluSx1|SINE|Alu	84627	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
11191	chr1	87521571	87521730	+	0	NA	Intergenic	Intergenic	-149995	NR_038324	100505768		NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
15199	chr1	149235571	149235730	+	0	NA	Intergenic	Intergenic	-34504	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
124877	chr2	8312701	8313880	+	0	NA	intron (NR_152741, intron 2 of 9)	intron (NR_152741, intron 2 of 9)	15129	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
98058	chr17	45452521	45452780	+	0	NA	TTS (NM_001352825).3	TTS (NM_001352825).3	-19780	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
182633	chr5	67002351	67002950	+	0	NA	intron (NR_111908, intron 1 of 1)	MIRb|SINE|MIR	1504	NR_111908	101928794		NR_111908		MAST4-AS1	-	MAST4 antisense RNA 1	ncRNA
175855	chr4	78945351	78946130	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-6302	NM_001350106	152559		NM_177453	ENSG00000163291	PAQR3	RKTG	progestin and adipoQ receptor family member 3	protein-coding
7180	chr1	32262751	32263130	+	0	NA	intron (NM_005356, intron 1 of 12)	L4_A_Mam|LINE|RTE-X	-11171	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
171624	chr3	197461351	197461650	+	0	NA	Intergenic	Intergenic	48161	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
169980	chr3	179450971	179451830	+	0	NA	promoter-TSS (NM_021629)	promoter-TSS (NM_021629)	70	NM_021629	59345		NM_021629	ENSG00000114450	GNB4	CMTD1F|HG2B	G protein subunit beta 4	protein-coding
180864	chr5	32609651	32610100	+	0	NA	Intergenic	AluY|SINE|Alu	24318	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
89875	chr16	89644601	89645000	+	0	NA	non-coding (NR_046418, exon 7 of 7)	non-coding (NR_046418, exon 7 of 7)	12908	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
197827	chr6	87832121	87832580	+	0	NA	intron (NR_110869, intron 2 of 4)	intron (NR_110869, intron 2 of 4)	47490	NR_110869	101928911		NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
172758	chr4	2861021	2861280	+	0	NA	intron (NM_001354754, intron 2 of 15)	L2a|LINE|L2	17000	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
83701	chr16	28486051	28486350	+	0	NA	intron (NM_001042432, intron 9 of 15)	AluSx1|SINE|Alu	5874	NM_001286109	1201		NM_000086	ENSG00000188603	CLN3	BTN1|BTS|JNCL	CLN3 lysosomal/endosomal transmembrane protein, battenin	protein-coding
212590	chr7	129025601	129025800	+	0	NA	intron (NR_167927, intron 1 of 23)	FLAM_C|SINE|Alu	29411	NM_001382222	23534		NM_012470	ENSG00000064419	TNPO3	IPO12|LGMD1F|LGMDD2|MTR10A|TRN-SR|TRN-SR2|TRNSR	transportin 3	protein-coding
128092	chr2	47900471	47901180	+	0	NA	intron (NM_001190274, intron 1 of 22)	(TA)n|Simple_repeat|Simple_repeat	4513	NM_001374325	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
26347	chr10	15254101	15254980	+	0	NA	intron (NM_001010924, intron 4 of 7)	intron (NM_001010924, intron 4 of 7)	-85847	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
102091	chr17	74971351	74971450	+	0	NA	intron (NR_110878, intron 1 of 2)	intron (NR_110878, intron 1 of 2)	711	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
210416	chr7	100048601	100048950	+	0	NA	promoter-TSS (NM_001362781)	promoter-TSS (NM_001362781)	-999	NM_001362781	7589		NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
148701	chr21	6436621	6437380	+	0	NA	Intergenic	Intergenic	23082	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
25114	chr10	3969821	3970780	+	0	NA	Intergenic	LTR8|LTR|ERV1	-20860	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
204489	chr7	4762071	4762630	+	0	NA	exon (NM_001037165, exon 9 of 9)	exon (NM_001037165, exon 9 of 9)	-13273	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
163268	chr3	50301851	50302580	+	0	NA	exon (NM_033159, exon 2 of 4)	exon (NM_033159, exon 2 of 4)	1359	NM_153285	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
196963	chr6	52985371	52985600	+	0	NA	exon (NM_001512, exon 4 of 7)	exon (NM_001512, exon 4 of 7)	9799	NM_001512	2941		NM_001512	ENSG00000170899	GSTA4	GSTA4-4|GTA4	glutathione S-transferase alpha 4	protein-coding
134487	chr2	143277601	143278130	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	148446	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
146372	chr20	49274971	49275500	+	0	NA	intron (NM_021035, intron 2 of 13)	intron (NM_021035, intron 2 of 13)	2822	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
173190	chr4	6777221	6778330	+	0	NA	Intergenic	Intergenic	-4952	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
79306	chr16	553921	554330	+	0	NA	3' UTR (NM_005632, exon 14 of 14)	3' UTR (NM_005632, exon 14 of 14)	-6269	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
158700	chr3	6490401	6490700	+	0	NA	Intergenic	L1PA2|LINE|L1	314899	NR_110123	101927347		NR_110123	ENSG00000226258	GRM7-AS3	-	GRM7 antisense RNA 3	ncRNA
182734	chr5	68266221	68266500	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-22159	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
62492	chr13	99418351	99418650	+	0	NA	Intergenic	Intergenic	62369	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
175961	chr4	81351621	81351930	+	0	NA	Intergenic	Intergenic	120132	NM_152545	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
44472	chr11	105027801	105028000	+	0	NA	intron (NM_033295, intron 2 of 4)	intron (NM_033295, intron 2 of 4)	-4732	NM_001136112	838		NM_004347	ENSG00000137757	CASP5	ICE(rel)III|ICEREL-III|ICH-3	caspase 5	protein-coding
137941	chr2	201122151	201122250	+	0	NA	intron (NR_147255, intron 1 of 4)	intron (NR_147255, intron 1 of 4)	3484	NM_001127183	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
12266	chr1	100462421	100462880	+	0	NA	intron (NM_001319210, intron 8 of 16)	intron (NM_001319210, intron 8 of 16)	-75489	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
128149	chr2	48417801	48418230	+	0	NA	Intergenic	L2a|LINE|L2	-22751	NM_001135629	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
194741	chr6	33861901	33862100	+	0	NA	Intergenic	Intergenic	34907	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
57612	chr12	122474701	122475200	+	0	NA	intron (NM_017612, intron 13 of 13)	AluSx|SINE|Alu	25982	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
3371	chr1	15621151	15621650	+	0	NA	intron (NM_032341, intron 1 of 9)	AluJb|SINE|Alu	3942	NM_032341	84301		NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
57435	chr12	121893151	121893250	+	0	NA	intron (NM_001261400, intron 1 of 3)	intron (NM_001261400, intron 1 of 3)	4410	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
44734	chr11	111928951	111929550	+	0	NA	intron (NM_001278542, intron 1 of 5)	intron (NM_001278542, intron 1 of 5)	2106	NM_001278542	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
99207	chr17	49555951	49556780	+	0	NA	intron (NR_103773, intron 1 of 2)	CpG	17699	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
150207	chr21	39382721	39383130	+	0	NA	intron (NM_001350296, intron 1 of 4)	L1MB3|LINE|L1	2467	NM_001350294	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
217790	chr8	33515901	33517430	+	0	NA	Intergenic	L1MC5a|LINE|L1	3190	NR_003041	692084		NR_003041	ENSG00000239039	SNORD13	RNU13|SNORD13A|U13	small nucleolar RNA, C/D box 13	snoRNA
209330	chr7	76200151	76200450	+	0	NA	Intergenic	Intergenic	-1596	NM_001291831	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
119504	chr19	40487701	40488680	+	0	NA	intron (NM_020971, intron 3 of 35)	intron (NM_020971, intron 3 of 35)	21189	NM_020971	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
67620	chr14	72924471	72924630	+	0	NA	Intergenic	Intergenic	-1914	NM_001352448	26094		NM_015604	ENSG00000119599	DCAF4	WDR21|WDR21A	DDB1 and CUL4 associated factor 4	protein-coding
129551	chr2	69826971	69827330	+	0	NA	TTS (NM_001153)	TTS (NM_001153)	-2510	NM_178439	64395		NM_178439	ENSG00000087338	GMCL1	BTBD13|GCL|GCL1|SPATA29	germ cell-less 1, spermatogenesis associated	protein-coding
85586	chr16	53499051	53499630	+	0	NA	intron (NM_001012398, intron 2 of 9)	L1PB4|LINE|L1	3869	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
177558	chr4	119233801	119234100	+	0	NA	intron (NM_001371399, intron 2 of 16)	intron (NM_001371399, intron 2 of 16)	21237	NM_001371399	54532		NM_019050	ENSG00000145390	USP53	PFIC7	ubiquitin specific peptidase 53	protein-coding
39977	chr11	62600831	62602850	+	0	NA	promoter-TSS (NM_004739)	promoter-TSS (NM_004739)	25	NM_004739	9219		NM_004739	ENSG00000149480	MTA2	MTA1L1|PID	metastasis associated 1 family member 2	protein-coding
171170	chr3	195639201	195639600	+	0	NA	Intergenic	Intergenic	12759	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
197321	chr6	73261851	73262180	+	0	NA	intron (NM_001251874, intron 2 of 4)	AluJb|SINE|Alu	1181	NM_030568	80759		NM_030568	ENSG00000135314	KHDC1	C6orf147|C6orf148|Em:AC019205.8|NDG1|bA257K9.4	KH domain containing 1	protein-coding
190749	chr6	424171	424730	+	0	NA	Intergenic	CpG	32698	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
229262	chr9	117783801	117784250	+	0	NA	Intergenic	Intergenic	79622	NM_003266	7099		NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll like receptor 4	protein-coding
82015	chr16	11926921	11927180	+	0	NA	TTS (NM_001355514)	TTS (NM_001355514)	-10396	NM_001130007	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
215233	chr7	156888301	156888500	+	0	NA	intron (NR_146958, intron 1 of 14)	AluY|SINE|Alu	4783	NM_001363412	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
72627	chr15	38307401	38307630	+	0	NA	intron (NM_152594, intron 2 of 6)	MLT1A|LTR|ERVL-MaLR	54679	NM_152594	161742		NM_152594	ENSG00000166068	SPRED1	LGSS|NFLS|PPP1R147|hSpred1|spred-1	sprouty related EVH1 domain containing 1	protein-coding
26149	chr10	13930051	13930450	+	0	NA	intron (NM_018027, intron 2 of 24)	intron (NM_018027, intron 2 of 24)	41646	NM_001318337	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
95103	chr17	34636971	34637700	+	0	NA	exon (NM_001304438, exon 9 of 9)	exon (NM_001304438, exon 9 of 9)	57753	NM_001304438	124842		NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding
194412	chr6	33069371	33069750	+	0	NA	intron (NM_001242525, intron 3 of 5).8	intron (NM_001242525, intron 3 of 5).8	4117	NM_033554	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
160640	chr3	31558871	31559380	+	0	NA	intron (NM_178862, intron 1 of 15)	L1MA4A|LINE|L1	26200	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
98126	chr17	45873751	45874250	+	0	NA	intron (NR_024559, intron 1 of 1)	intron (NR_024559, intron 1 of 1)	-20382	NM_016835	4137		NM_005910	ENSG00000186868	MAPT	DDPAC|FTDP-17|MAPTL|MSTD|MTBT1|MTBT2|PPND|PPP1R103|TAU|Tau-PHF6|tau-40	microtubule associated protein tau	protein-coding
94780	chr17	30969771	30969930	+	0	NA	Intergenic	AluSz|SINE|Alu	-1189	NM_197939	84282		NM_032322	ENSG00000181481	RNF135	L13|MMFD|REUL|Riplet	ring finger protein 135	protein-coding
109087	chr18	79956321	79956580	+	0	NA	Intergenic	MER49|LTR|ERV1	-4797	NM_025078	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
38419	chr11	45081551	45081850	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-12459	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
239089	chrY	10464721	10465030	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	554077	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
48487	chr12	9820421	9821080	+	0	NA	intron (NR_159359, intron 1 of 5)	L1PA13|LINE|L1	-6731	NR_159361	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
152086	chr22	19763021	19763630	+	0	NA	exon (NM_001379200, exon 2 of 7)	exon (NM_001379200, exon 2 of 7)	2547	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
200481	chr6	135223651	135224350	+	0	NA	Intergenic	L2|LINE|L2	-15160	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
206269	chr7	29414201	29414430	+	0	NA	intron (NM_004067, intron 6 of 12)	intron (NM_004067, intron 6 of 12)	-65397	NM_001293077	1124		NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
64350	chr14	24059271	24059430	+	0	NA	exon (NM_138360, exon 21 of 40).2	exon (NM_138360, exon 21 of 40).2	7341	NM_138360	90668		NM_138360	ENSG00000186648	CARMIL3	C14orf121|LRRC16B|crml-1	capping protein regulator and myosin 1 linker 3	protein-coding
217461	chr8	28737401	28737750	+	0	NA	exon (NM_001440, exon 5 of 7)	exon (NM_001440, exon 5 of 7)	36074	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
78229	chr15	90656871	90657100	+	0	NA	intron (NR_120372, intron 2 of 3)	AluJb|SINE|Alu	-3249	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
136267	chr2	174679251	174679650	+	0	NA	intron (NM_001077269, intron 1 of 7)	AluSg|SINE|Alu	3449	NM_001077269	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
187534	chr5	142711221	142711680	+	0	NA	Intergenic	LTR66|LTR|ERVL	-13380	NM_001257205	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
216106	chr8	11168721	11169080	+	0	NA	intron (NR_138153, intron 1 of 2)	LTR25|LTR|ERV1	32466	NR_138152	286046		NM_173683	ENSG00000171044	XKR6	C8orf21|C8orf5|C8orf7|XRG6	XK related 6	protein-coding
233627	chrX	513971	514130	+	0	NA	Intergenic	Intergenic	-110294	NM_006883	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
103629	chr17	78744401	78744730	+	0	NA	intron (NM_017456, intron 1 of 12)	Charlie24|DNA|hAT-Charlie	-7663	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
116600	chr19	18268071	18268500	+	0	NA	intron (NM_001145305, intron 2 of 3)	intron (NM_001145305, intron 2 of 3)	6167	NM_001145304	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
209284	chr7	75946021	75946530	+	0	NA	intron (NM_001382657, intron 2 of 16)	intron (NM_001382657, intron 2 of 16)	2492	NR_002955	677801		NR_002955	ENSG00000201643	SNORA14A	ACA14a	small nucleolar RNA, H/ACA box 14A	snoRNA
142206	chr20	3042671	3043500	+	0	NA	promoter-TSS (NM_001501)	promoter-TSS (NM_001501)	-537	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
226987	chr9	83504051	83504150	+	0	NA	intron (NM_174938, intron 1 of 13)	intron (NM_174938, intron 1 of 13)	34301	NM_001244959	257019		NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
236064	chrX	56429501	56429700	+	0	NA	Intergenic	L1PA6|LINE|L1	-134027	NM_013444	29978		NM_013444	ENSG00000188021	UBQLN2	ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2	ubiquilin 2	protein-coding
15397	chr1	150230771	150230930	+	0	NA	intron (NM_001280559, intron 2 of 6)	AluSx1|SINE|Alu	3828	NM_001136479	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
160996	chr3	37261471	37261950	+	0	NA	intron (NM_002078, intron 2 of 23)	L1MEi|LINE|L1	-17515	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
71130	chr14	104970671	104971930	+	0	NA	promoter-TSS (NM_001350929)	promoter-TSS (NM_001350929)	-793	NM_001350929	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
153878	chr22	30273651	30273950	+	0	NA	Intergenic	MamTip1|DNA|hAT-Tip100	-6949	NM_020530	5008		NM_020530	ENSG00000099985	OSM	-	oncostatin M	protein-coding
28122	chr10	43412051	43412150	+	0	NA	Intergenic	Intergenic	-2852	NM_001098204	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
80478	chr16	2703571	2704300	+	0	NA	intron (NM_018992, intron 5 of 5)	intron (NM_018992, intron 5 of 5)	16289	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
124371	chr19	58363921	58364450	+	0	NA	intron (NR_136527, intron 1 of 2)	intron (NR_136527, intron 1 of 2)	-1434	NM_198458	162968		NM_198458	ENSG00000174586	ZNF497	-	zinc finger protein 497	protein-coding
116950	chr19	18854771	18855200	+	0	NA	exon (NM_002911, exon 10 of 24)	exon (NM_002911, exon 10 of 24)	23026	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
140087	chr2	231450951	231451280	+	0	NA	Intergenic	AluY|SINE|Alu	4821	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
6265	chr1	27576671	27577350	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	26484	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
139213	chr2	219284321	219284580	+	0	NA	intron (NM_001039550, intron 8 of 9)	MIR|SINE|MIR	5084	NM_006736	3300		NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HMNR5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
57957	chr12	123841901	123842130	+	0	NA	intron (NM_207437, intron 29 of 77)	U6|snRNA|snRNA	79520	NM_207437	196385		NM_207437	ENSG00000197653	DNAH10	SPGF56	dynein axonemal heavy chain 10	protein-coding
108538	chr18	74492201	74492400	+	0	NA	Intergenic	MLT1E|LTR|ERVL-MaLR	-4063	NM_001370249	55748		NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	carnosine dipeptidase 2	protein-coding
76242	chr15	73981871	73982030	+	0	NA	3' UTR (NM_001256675, exon 6 of 6)	3' UTR (NM_001256675, exon 6 of 6)	10345	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
25535	chr10	7389451	7389550	+	0	NA	intron (NM_001029880, intron 1 of 20)	intron (NM_001029880, intron 1 of 20)	19841	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
139982	chr2	230916121	230916400	+	0	NA	intron (NM_005683, intron 1 of 1)	AluJo|SINE|Alu	8982	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
135500	chr2	161979621	161979950	+	0	NA	intron (NM_001178016, intron 26 of 26)	intron (NM_001178016, intron 26 of 26)	94430	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
228670	chr9	107296421	107296880	+	0	NA	intron (NM_001244713, intron 1 of 9)	AluSz6|SINE|Alu	11881	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
53038	chr12	57613251	57613680	+	0	NA	exon (NM_001347933, exon 4 of 14)	exon (NM_001347933, exon 4 of 14)	2030	NR_046223	115557		NM_133483	ENSG00000240771	ARHGEF25	GEFT|p63RhoGEF	Rho guanine nucleotide exchange factor 25	protein-coding
144883	chr20	36923821	36924230	+	0	NA	intron (NM_001363733, intron 6 of 15)	AluJr|SINE|Alu	27683	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
124658	chr2	2698651	2698750	+	0	NA	Intergenic	Intergenic	-367425	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
68193	chr14	76767721	76768850	+	0	NA	intron (NM_014909, intron 1 of 6)	intron (NM_014909, intron 1 of 6)	6817	NM_014909	22846		NM_014909	ENSG00000071246	VASH1	KIAA1036|TTCP 1	vasohibin 1	protein-coding
128176	chr2	53768971	53769130	+	0	NA	intron (NM_001346127, intron 1 of 2)	intron (NM_001346127, intron 1 of 2)	1246	NM_001008708	494143		NM_001008708	ENSG00000143942	CHAC2	GCG1	ChaC glutathione specific gamma-glutamylcyclotransferase 2	protein-coding
157633	chr22	46109201	46111000	+	0	NA	non-coding (NR_027033, exon 6 of 6)	non-coding (NR_027033, exon 6 of 6)	-2649	NR_029478	406883		NR_029478	ENSG00000283990	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	ncRNA
54374	chr12	89761751	89761850	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-52434	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
214772	chr7	151090271	151090900	+	0	NA	intron (NM_001350103, intron 1 of 18)	intron (NM_001350103, intron 1 of 18)	4110	NM_001350103	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
160968	chr3	37139671	37139830	+	0	NA	intron (NM_001348303, intron 3 of 16)	L2|LINE|L2	4432	NR_168330	100421436		NR_168330		UBE2FP1	-	UBE2F pseudogene 1	pseudo
47723	chr12	6461701	6462680	+	0	NA	TTS (NM_014231)	TTS (NM_014231)	8487	NR_123717	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
59962	chr13	31904921	31905180	+	0	NA	intron (NR_027062, intron 1 of 3)	MIR3|SINE|MIR	58267	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
16086	chr1	153539251	153540030	+	0	NA	intron (NM_002962, intron 3 of 3)	intron (NM_002962, intron 3 of 3)	2169	NM_002962	6276		NM_002962	ENSG00000196420	S100A5	S100D	S100 calcium binding protein A5	protein-coding
140314	chr2	232501801	232502000	+	0	NA	Intergenic	Intergenic	-14066	NM_004826	9427		NM_004826	ENSG00000171551	ECEL1	DA5D|DINE|ECEX|XCE	endothelin converting enzyme like 1	protein-coding
70151	chr14	100289001	100289450	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	11868	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
8852	chr1	43366621	43367300	+	0	NA	intron (NR_046117, intron 1 of 7)	intron (NR_046117, intron 1 of 7)	778	NM_001256399	64834		NM_022821	ENSG00000066322	ELOVL1	CGI-88|IKSHD|Ssc1	ELOVL fatty acid elongase 1	protein-coding
9518	chr1	51429621	51430230	+	0	NA	intron (NM_001981, intron 12 of 24)	AluSx1|SINE|Alu	-7830	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
119165	chr19	39399651	39400180	+	0	NA	non-coding (NR_133915, exon 3 of 3)	non-coding (NR_133915, exon 3 of 3)	-6932	NM_003407	7538		NM_003407	ENSG00000128016	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding
124908	chr2	8483401	8483780	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	100202	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
19594	chr1	179706301	179706750	+	0	NA	Intergenic	Intergenic	-21251	NM_001329714	148753		NM_173509	ENSG00000143340	FAM163A	C1orf76|NDSP	family with sequence similarity 163 member A	protein-coding
66779	chr14	64658451	64659330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-45534	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
195848	chr6	41439821	41440580	+	0	NA	Intergenic	Intergenic	-62244	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
12480	chr1	107934721	107935050	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-29558	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
101920	chr17	74461151	74461250	+	0	NA	Intergenic	Intergenic	-5173	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
230118	chr9	127710171	127710530	+	0	NA	intron (NM_001012502, intron 2 of 8)	L2a|LINE|L2	3362	NR_145961	286207		NM_001012502	ENSG00000160401	CFAP157	C9orf117	cilia and flagella associated protein 157	protein-coding
49646	chr12	28268371	28268730	+	0	NA	intron (NM_001330367, intron 3 of 11)	intron (NM_001330367, intron 3 of 11)	-77812	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
17476	chr1	156715571	156715930	+	0	NA	Intergenic	L2|LINE|L2	-9934	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
70858	chr14	103709851	103710150	+	0	NA	intron (NM_001371232, intron 4 of 9)	intron (NM_001371232, intron 4 of 9)	5451	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
16273	chr1	153999771	154000130	+	0	NA	intron (NM_001159484, intron 35 of 37)	AluJo|SINE|Alu	9188	NM_001030	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
203743	chr7	1155551	1156630	+	0	NA	intron (NM_001365383, intron 3 of 5)	intron (NM_001365383, intron 3 of 5)	4106	NM_001365381	90637		NM_182491	ENSG00000178381	ZFAND2A	AIRAP	zinc finger AN1-type containing 2A	protein-coding
184180	chr5	95819521	95819850	+	0	NA	intron (NM_001118890, intron 1 of 2)	AluY|SINE|Alu	3041	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
39624	chr11	61429051	61430800	+	0	NA	promoter-TSS (NM_024811)	promoter-TSS (NM_024811)	50	NM_024811	79869		NM_024811	ENSG00000149532	CPSF7	CFIm59	cleavage and polyadenylation specific factor 7	protein-coding
165935	chr3	107529401	107529600	+	0	NA	intron (NM_020235, intron 2 of 16)	intron (NM_020235, intron 2 of 16)	6538	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
18832	chr1	167679321	167679580	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	-42532	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
157734	chr22	46591221	46591480	+	0	NA	intron (NM_001366660, intron 1 of 17)	AluJo|SINE|Alu	14262	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
193594	chr6	30716721	30718330	+	0	NA	promoter-TSS (NM_014641).3	promoter-TSS (NM_014641).3	-244	NM_014641	9656		NM_014641	ENSG00000137337	MDC1	NFBD1	mediator of DNA damage checkpoint 1	protein-coding
47881	chr12	6694971	6695950	+	0	NA	exon (NM_001244015, exon 5 of 6)	exon (NM_001244015, exon 5 of 6)	4955	NM_001244015	196500		NM_153685	ENSG00000139200	PIANP	C12orf53|LEDA1|PANP|leda-1	PILR alpha associated neural protein	protein-coding
109314	chr19	579871	580230	+	0	NA	intron (NM_001322243, intron 2 of 7)	intron (NM_001322243, intron 2 of 7)	7454	NM_198589	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
232893	chr9	136847371	136848200	+	0	NA	TTS (NM_001080482)	TTS (NM_001080482)	-1624	NM_014172	29085		NM_014172	ENSG00000054148	PHPT1	CGI-202|HEL-S-132P|HSPC141|PHP|PHP14	phosphohistidine phosphatase 1	protein-coding
73295	chr15	41874001	41874230	+	0	NA	intron (NM_016642, intron 24 of 67)	intron (NM_016642, intron 24 of 67)	-7564	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
192745	chr6	26403201	26403400	+	0	NA	intron (NM_194441, intron 1 of 9)	AluSx|SINE|Alu	1025	NM_001145009	11119		NM_007048	ENSG00000026950	BTN3A1	BT3.1|BTF5|BTN3.1|CD277	butyrophilin subfamily 3 member A1	protein-coding
29519	chr10	70760071	70760630	+	0	NA	intron (NM_139155, intron 21 of 21)	intron (NM_139155, intron 21 of 21)	22016	NR_134534	219793		NM_152710	ENSG00000166220	TBATA	C10orf27|SPATIAL	thymus, brain and testes associated	protein-coding
2834	chr1	11060801	11062130	+	0	NA	Intergenic	AluSc|SINE|Alu	-1447	NM_003132	6723		NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
203644	chr7	978551	979050	+	0	NA	non-coding (NR_156697, exon 5 of 5)	non-coding (NR_156697, exon 5 of 5)	-3251	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
225259	chr9	34369971	34370130	+	0	NA	3' UTR (NM_020702, exon 2 of 2)	3' UTR (NM_020702, exon 2 of 2)	6848	NM_020702	57462		NM_020702	ENSG00000164976	MYORG	IBGC7|KIAA1161|NET37	myogenesis regulating glycosidase (putative)	protein-coding
161276	chr3	39281721	39282580	+	0	NA	promoter-TSS (NM_001171171)	promoter-TSS (NM_001171171)	-415	NM_001171174	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
147185	chr20	56523401	56523600	+	0	NA	intron (NM_080615, intron 1 of 6)	AluSx|SINE|Alu	-1244	NM_001012971	200232		NM_001012971	ENSG00000124103	FAM209A	C20orf106|dJ1153D9.3	family with sequence similarity 209 member A	protein-coding
33543	chr10	119287871	119288530	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	80629	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
54	chr1	266671	267150	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-60313	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
14202	chr1	125182201	125183300	+	0	NA	Intergenic	Intergenic	3663638	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
239383	chrY	21053171	21053350	+	0	NA	Intergenic	L1PA3|LINE|L1	297152	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
40825	chr11	64951551	64951850	+	0	NA	intron (NM_001037225, intron 4 of 10)	AluJo|SINE|Alu	-15807	NM_130769	170589		NM_130769	ENSG00000149735	GPHA2	A2|GPA2|ZSIG51	glycoprotein hormone subunit alpha 2	protein-coding
120346	chr19	43578371	43578730	+	0	NA	intron (NM_001193621, intron 2 of 5)	intron (NM_001193621, intron 2 of 5)	1750	NM_001193621	390940		NM_001193621	ENSG00000234465	PINLYP	-	phospholipase A2 inhibitor and LY6/PLAUR domain containing	protein-coding
105493	chr17	83088171	83089380	+	0	NA	intron (NM_001004431, intron 2 of 3).2	intron (NM_001004431, intron 2 of 3).2	7629	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
67571	chr14	71475971	71476150	+	0	NA	intron (NM_001284247, intron 1 of 23)	intron (NM_001284247, intron 1 of 23)	-11801	NR_027046	145474		NR_027046		LOC145474	-	uncharacterized LOC145474	ncRNA
72974	chr15	40572071	40572830	+	0	NA	intron (NM_001286407, intron 2 of 2)	AluY|SINE|Alu	3151	NM_152260	27079		NM_152260	ENSG00000166133	RPUSD2	C15orf19|C18B11|PUS9	RNA pseudouridine synthase domain containing 2	protein-coding
73260	chr15	41826401	41826600	+	0	NA	non-coding (NR_049761, exon 30 of 30)	non-coding (NR_049761, exon 30 of 30)	-1585	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
104095	chr17	80267151	80267250	+	0	NA	intron (NM_020954, intron 2 of 16)	AluSx|SINE|Alu	6348	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
47188	chr12	804321	804650	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSx1|SINE|Alu	51562	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
105080	chr17	82102771	82103150	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-4724	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
215581	chr7	158832421	158833500	+	0	NA	Intergenic	L1MC4|LINE|L1	-3451	NM_020728	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
151134	chr21	44896271	44897330	+	0	NA	intron (NM_001127491, intron 8 of 15)	intron (NM_001127491, intron 8 of 15)	-22897	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
39125	chr11	48141501	48141950	+	0	NA	intron (NM_002843, intron 11 of 24)	intron (NM_002843, intron 11 of 24)	44943	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
172821	chr4	3071201	3071400	+	0	NA	intron (NR_045414, intron 1 of 2)	MLT1J|LTR|ERVL-MaLR	3214	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
125628	chr2	19354801	19355450	+	0	NA	intron (NM_145260, intron 1 of 2)	intron (NM_145260, intron 1 of 2)	3498	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
62829	chr13	109773371	109773530	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	13133	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
73461	chr15	43488601	43488800	+	0	NA	intron (NM_001355001, intron 4 of 28)	AluSq2|SINE|Alu	4456	NM_001141980	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
111668	chr19	4252771	4253330	+	0	NA	intron (NM_018074, intron 3 of 7)	L1MD3|LINE|L1	5970	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
167529	chr3	129305651	129306130	+	0	NA	TTS (NM_001363881)	TTS (NM_001363881)	-10381	NR_026991	339942		NM_001025468		H1-10-AS1	C3orf47|H1FX-AS1	H1-10 antisense RNA 1	ncRNA
118465	chr19	35885971	35886530	+	0	NA	Intergenic	AluY|SINE|Alu	13487	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
148715	chr21	6564701	6566210	+	0	NA	TTS (NM_001363766)	TTS (NM_001363766)	3535	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
135339	chr2	160388201	160389080	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	19242	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
97852	chr17	44971321	44971580	+	0	NA	Intergenic	Intergenic	-3147	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
205337	chr7	12638921	12639280	+	0	NA	intron (NM_033128, intron 8 of 13)	intron (NM_033128, intron 8 of 13)	-47727	NM_212460	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
180713	chr5	25083051	25083250	+	0	NA	Intergenic	L1PA3|LINE|L1	107506	NR_147006	105374694		NR_147006		LINC02228	HIKER	long intergenic non-protein coding RNA 2228	ncRNA
192174	chr6	17663001	17663480	+	0	NA	intron (NM_001278209, intron 9 of 22)	(AC)n|Simple_repeat|Simple_repeat	-42890	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
143153	chr20	23994971	23995780	+	0	NA	Intergenic	Intergenic	-6596	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
52984	chr12	57490171	57490780	+	0	NA	intron (NM_004990, intron 6 of 20)	intron (NM_004990, intron 6 of 20)	-1651	NM_001319850	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
141785	chr20	61601	62000	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-25872	NM_153325	245938		NM_153325	ENSG00000178591	DEFB125	DEFB-25	defensin beta 125	protein-coding
73800	chr15	48337001	48337300	+	0	NA	intron (NM_001330286, intron 4 of 6)	intron (NM_001330286, intron 4 of 6)	4953	NM_001948	1854		NM_001948	ENSG00000128951	DUT	BMFDMS|dUTPase	deoxyuridine triphosphatase	protein-coding
129476	chr2	69588971	69589330	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	54588	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
55663	chr12	107346071	107346430	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	25662	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
28274	chr10	46007671	46007830	+	0	NA	intron (NM_001145263, intron 9 of 9)	AluJo|SINE|Alu	11787	NM_001145262	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
185195	chr5	119388301	119388700	+	0	NA	intron (NM_014350, intron 1 of 1)	L2a|LINE|L2	32481	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
13612	chr1	116399751	116400050	+	0	NA	intron (NM_000701, intron 18 of 22)	intron (NM_000701, intron 18 of 22)	16530	NM_001160234	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
14862	chr1	146401301	146402000	+	0	NA	Intergenic	Intergenic	24843	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
12281	chr1	100538751	100539990	+	0	NA	exon (NM_022049, exon 2 of 2)	exon (NM_022049, exon 2 of 2)	1231	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
122918	chr19	50653671	50653850	+	0	NA	intron (NM_001195076, intron 1 of 4)	MER90a|LTR|ERV1	4315	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
222070	chr8	130325051	130325830	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-28907	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
118572	chr19	36269471	36269630	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-23622	NM_001366188	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
96691	chr17	41328701	41328900	+	0	NA	Intergenic	Intergenic	-13090	NM_031964	83902		NM_031964	ENSG00000186860	KRTAP17-1	KAP17.1|KRTAP16.1|KRTAP17.1	keratin associated protein 17-1	protein-coding
46909	chr11	134226701	134226980	+	0	NA	intron (NM_052875, intron 1 of 5)	intron (NM_052875, intron 1 of 5)	-1379	NM_001372070	23310		NM_015261	ENSG00000151503	NCAPD3	CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6	non-SMC condensin II complex subunit D3	protein-coding
139886	chr2	230668151	230669100	+	0	NA	Intergenic	Intergenic	31904	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
174792	chr4	48045101	48045300	+	0	NA	Intergenic	AluSc|SINE|Alu	28428	NM_207330	152519		NM_207330	ENSG00000163293	NIPAL1	NIPA3|NPAL1|SLC57A3	NIPA like domain containing 1	protein-coding
105201	chr17	82319371	82320130	+	0	NA	Intergenic	CpG	-2142	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
74384	chr15	58886271	58886430	+	0	NA	intron (NR_135043, intron 17 of 18)	AluSx1|SINE|Alu	47329	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
220843	chr8	103020201	103021680	+	0	NA	promoter-TSS (NM_001695)	promoter-TSS (NM_001695)	-143	NM_001695	528		NM_001695	ENSG00000155097	ATP6V1C1	ATP6C|ATP6D|VATC|Vma5	ATPase H+ transporting V1 subunit C1	protein-coding
113649	chr19	10357801	10358000	+	0	NA	exon (NM_003331, exon 17 of 25)	exon (NM_003331, exon 17 of 25)	-18276	NM_002162	3385		NM_002162	ENSG00000076662	ICAM3	CD50|CDW50|ICAM-R	intercellular adhesion molecule 3	protein-coding
206185	chr7	28153021	28153730	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-27082	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
145404	chr20	41618001	41620350	+	0	NA	promoter-TSS (NM_032221)	promoter-TSS (NM_032221)	-798	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
183850	chr5	87074971	87075830	+	0	NA	Intergenic	Intergenic	39554	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
35894	chr11	2406101	2406630	+	0	NA	intron (NM_014555, intron 21 of 23)	intron (NM_014555, intron 21 of 23)	5615	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
5424	chr1	25554521	25555430	+	0	NA	intron (NM_015627, intron 3 of 8)	intron (NM_015627, intron 3 of 8)	11369	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
27856	chr10	40768971	40769130	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1598995	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
219319	chr8	70145271	70145630	+	0	NA	intron (NM_001321713, intron 11 of 21)	AluSc|SINE|Alu	-74198	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
132396	chr2	105786301	105787100	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	41637	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
180614	chr5	16552651	16552950	+	0	NA	intron (NM_001034850, intron 3 of 8)	intron (NM_001034850, intron 3 of 8)	-43802	NM_019000	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
224229	chr9	5793801	5794080	+	0	NA	intron (NM_024896, intron 13 of 14)	L1MC2|LINE|L1	39177	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
66119	chr14	60095271	60095600	+	0	NA	intron (NM_022495, intron 1 of 9)	PRIMA4_LTR|LTR|ERV1	3512	NM_001330177	64430		NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex 4	protein-coding
160892	chr3	33787121	33787680	+	0	NA	Intergenic	AluSx3|SINE|Alu	-11171	NM_001256192	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
1921	chr1	6471321	6472000	+	0	NA	intron (NM_001042665, intron 11 of 20)	CpG-349	-5465	NM_148966	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
6831	chr1	31014701	31014900	+	0	NA	intron (NM_014676, intron 3 of 21)	AluSx1|SINE|Alu	-46563	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
40747	chr11	64835201	64835650	+	0	NA	intron (NM_017525, intron 15 of 36)	intron (NM_017525, intron 15 of 36)	9228	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
69549	chr14	96518471	96518630	+	0	NA	intron (NM_001293628, intron 1 of 21)	AluYc3|SINE|Alu	15685	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
145172	chr20	38860351	38860930	+	0	NA	intron (NM_001172735, intron 2 of 9)	MLT1J2|LTR|ERVL-MaLR	54943	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
191225	chr6	5706721	5706980	+	0	NA	intron (NM_001374875, intron 6 of 6)	intron (NM_001374875, intron 6 of 6)	-11578	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
226502	chr9	71780951	71782050	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-12987	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
67956	chr14	74837851	74839530	+	0	NA	Intergenic	Intergenic	37455	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
88981	chr16	87895551	87896580	+	0	NA	intron (NR_159798, intron 5 of 7)	MIRb|SINE|MIR	-26558	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
116264	chr19	17671821	17672150	+	0	NA	intron (NM_001080421, intron 4 of 41)	MLT1J|LTR|ERVL-MaLR	16214	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
27391	chr10	31243101	31243300	+	0	NA	intron (NR_134478, intron 1 of 2)	intron (NR_134478, intron 1 of 2)	55317	NR_134478	101929352		NR_134478		LINC02664	-	long intergenic non-protein coding RNA 2664	ncRNA
57532	chr12	122145151	122145750	+	0	NA	3' UTR (NM_014938, exon 17 of 17)	3' UTR (NM_014938, exon 17 of 17)	-22269	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
213723	chr7	140304221	140304900	+	0	NA	Intergenic	Intergenic	93970	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
95436	chr17	36126871	36127030	+	0	NA	Intergenic	Intergenic	23123	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
204738	chr7	5566651	5566750	+	0	NA	Intergenic	AluSz|SINE|Alu	-26116	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
180136	chr5	1329521	1329780	+	0	NA	intron (NM_030782, intron 9 of 16)	intron (NM_030782, intron 9 of 16)	15449	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
209509	chr7	76982651	76982950	+	0	NA	intron (NR_023383, intron 1 of 10)	intron (NR_023383, intron 1 of 10)	1978	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
111940	chr19	4789421	4789980	+	0	NA	Intergenic	AluY|SINE|Alu	-2034	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
84109	chr16	29658451	29658750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4350	NM_001030288	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
139507	chr2	224543771	224544680	+	0	NA	intron (NM_001257197, intron 1 of 14)	intron (NM_001257197, intron 1 of 14)	25730	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
56298	chr12	112403751	112404050	+	0	NA	Intergenic	AluJr|SINE|Alu	5385	NM_001320139	6128		NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1|eL6	ribosomal protein L6	protein-coding
147269	chr20	57472651	57472750	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	52167	NM_001269052	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
219013	chr8	63205071	63205730	+	0	NA	intron (NM_001277815, intron 5 of 5)	intron (NM_001277815, intron 5 of 5)	36397	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
203258	chr6	169568621	169568880	+	0	NA	intron (NR_146875, intron 19 of 20)	intron (NR_146875, intron 19 of 20)	133279	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
181809	chr5	52726951	52727530	+	0	NA	Intergenic	Intergenic	-60676	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
106711	chr18	23458621	23459230	+	0	NA	intron (NR_145477, intron 1 of 12)	intron (NR_145477, intron 1 of 12)	5638	NR_145477	8780		NM_003831	ENSG00000101782	RIOK3	SUDD	RIO kinase 3	protein-coding
132368	chr2	105761651	105761950	+	0	NA	intron (NM_001004722, intron 1 of 3)	AluJb|SINE|Alu	16737	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
233771	chrX	1417771	1417930	+	0	NA	intron (NM_001173473, intron 11 of 12).2	(AC)n|Simple_repeat|Simple_repeat	17319	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
144216	chr20	34364851	34365300	+	0	NA	intron (NM_031483, intron 1 of 24)	AluJb|SINE|Alu	1802	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
224047	chr9	3508621	3508980	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	17201	NM_002919	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
177770	chr4	122716751	122717300	+	0	NA	Intergenic	Intergenic	15433	NR_024041	729338		NR_024041		CETN4P	-	centrin 4, pseudogene	pseudo
99867	chr17	56592471	56593100	+	0	NA	promoter-TSS (NM_005450)	promoter-TSS (NM_005450)	-914	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
88792	chr16	87344821	87346050	+	0	NA	intron (NM_024735, intron 3 of 8)	intron (NM_024735, intron 3 of 8)	27926	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
51001	chr12	49659551	49659650	+	0	NA	intron (NM_175736, intron 5 of 25)	AluJr4|SINE|Alu	36039	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
55009	chr12	96369421	96370130	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSz|SINE|Alu	30664	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
150513	chr21	42890701	42891450	+	0	NA	Intergenic	AluSz|SINE|Alu	-2234	NM_021075	4731		NM_021075	ENSG00000160194	NDUFV3	CI-10k|CI-9KD	NADH:ubiquinone oxidoreductase subunit V3	protein-coding
236681	chrX	77446221	77446680	+	0	NA	promoter-TSS (NM_003868)	promoter-TSS (NM_003868)	-939	NM_003868	8823		NM_003868	ENSG00000196468	FGF16	FGF-16|MF4	fibroblast growth factor 16	protein-coding
110593	chr19	2170971	2172380	+	0	NA	intron (NM_032482, intron 1 of 27)	intron (NM_032482, intron 1 of 27)	7742	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
192402	chr6	24838721	24839320	+	0	NA	TTS (NM_015864)	TTS (NM_015864)	38250	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
151616	chr22	12176001	12176750	+	0	NA	Intergenic	ACRO1|Satellite|acro	278969	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
111696	chr19	4277821	4278680	+	0	NA	promoter-TSS (NM_001372011)	promoter-TSS (NM_001372011)	-819	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
3317	chr1	15411401	15412980	+	0	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	2302	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
25254	chr10	6061821	6063300	+	0	NA	promoter-TSS (NM_001308243)	promoter-TSS (NM_001308243)	-193	NM_001308243	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
37296	chr11	14732771	14732930	+	0	NA	intron (NM_001363569, intron 1 of 15)	MER8|DNA|TcMar-Tigger	89046	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
36493	chr11	6388551	6388850	+	0	NA	Intergenic	LTR56|LTR|ERV1	-1774	NM_001365135	6609		NM_000543	ENSG00000166311	SMPD1	ASM|ASMASE|NPD	sphingomyelin phosphodiesterase 1	protein-coding
223921	chr9	506821	507080	+	0	NA	intron (NM_001354332, intron 1 of 11)	intron (NM_001354332, intron 1 of 11)	2255	NM_015158	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
211190	chr7	102602851	102603880	+	0	NA	intron (NM_001079877, intron 5 of 19)	AluJr|SINE|Alu	13391	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
124244	chr19	57465771	57466080	+	0	NA	Intergenic	L1M1|LINE|L1	-9186	NM_020633	57191		NM_020633	ENSG00000178201	VN1R1	V1RL1|VNR19I1|ZVNH1|ZVNR1	vomeronasal 1 receptor 1	protein-coding
81820	chr16	11562071	11562300	+	0	NA	intron (NR_024320, intron 1 of 3)	AluJo|SINE|Alu	24188	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
25432	chr10	6579371	6579600	+	0	NA	promoter-TSS (NR_036502)	promoter-TSS (NR_036502)	791	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
30509	chr10	79324901	79325200	+	0	NA	Intergenic	Intergenic	-22419	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
216067	chr8	10548101	10548330	+	0	NA	intron (NM_001197020, intron 4 of 4)	intron (NM_001197020, intron 4 of 4)	22683	NM_001197020	203074		NM_198464	ENSG00000184647	PRSS55	CT153|T-SP1|TSP1|UNQ9391	serine protease 55	protein-coding
48764	chr12	11540801	11541230	+	0	NA	Intergenic	Intergenic	-7015	NR_033890	338817		NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
76035	chr15	72200821	72201080	+	0	NA	intron (NM_182470, intron 9 of 10)	intron (NM_182470, intron 9 of 10)	-3163	NM_001012642	196996		NM_001012642	ENSG00000175318	GRAMD2A	GRAMD2	GRAM domain containing 2A	protein-coding
119289	chr19	39792921	39793480	+	0	NA	Intergenic	Intergenic	14346	NM_001382345	342900		NM_001143832	ENSG00000213921	LEUTX	-	leucine twenty homeobox	protein-coding
22929	chr1	225941151	225941450	+	0	NA	promoter-TSS (NM_003240)	promoter-TSS (NM_003240)	-80	NM_003240	7044		NM_003240	ENSG00000143768	LEFTY2	EBAF|LEFTA|LEFTYA|TGFB4	left-right determination factor 2	protein-coding
134435	chr2	143139751	143140380	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	10646	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
168873	chr3	152297771	152297930	+	0	NA	intron (NM_001376823, intron 1 of 10)	AluSg|SINE|Alu	-1164	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
213624	chr7	139618951	139619250	+	0	NA	intron (NM_022740, intron 7 of 14)	intron (NM_022740, intron 7 of 14)	95415	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
135033	chr2	156319721	156320910	+	0	NA	Intergenic	CpG	12406	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
169756	chr3	172546771	172547130	+	0	NA	Intergenic	Intergenic	-23520	NM_003810	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
158686	chr3	5191701	5192300	+	0	NA	intron (NM_014674, intron 1 of 11)	intron (NM_014674, intron 1 of 11)	4293	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
90623	chr17	1646001	1646300	+	0	NA	promoter-TSS (NM_003693).2	promoter-TSS (NM_003693).2	-418	NM_003693	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
160725	chr3	32436121	32437050	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	44732	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
109035	chr18	79736501	79737150	+	0	NA	intron (NM_004715, intron 12 of 12)	CpG	55395	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
25774	chr10	11149101	11150100	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-15281	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
186672	chr5	138648521	138648780	+	0	NA	Intergenic	Intergenic	-73249	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
7126	chr1	32181401	32182650	+	0	NA	intron (NM_001376858, intron 2 of 9)	intron (NM_001376858, intron 2 of 9)	1960	NM_001376857	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
595	chr1	1294801	1295350	+	0	NA	intron (NM_030649, intron 19 of 23)	intron (NM_030649, intron 19 of 23)	1095	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
145068	chr20	38534821	38535080	+	0	NA	intron (NM_001282918, intron 15 of 29)	intron (NM_001282918, intron 15 of 29)	18387	NR_039605	100616190		NR_039605	ENSG00000275453	MIR548O2	-	microRNA 548o-2	ncRNA
172570	chr4	2442851	2443280	+	0	NA	intron (NM_001193282, intron 4 of 15)	intron (NM_001193282, intron 4 of 15)	24110	NM_001193282	402160		NM_001193282	ENSG00000206113	CFAP99	-	cilia and flagella associated protein 99	protein-coding
108691	chr18	77039371	77039730	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-22495	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
122692	chr19	49894471	49895700	+	0	NA	exon (NM_152899, exon 4 of 8)	exon (NM_152899, exon 4 of 8)	1802	NM_001385639	259307		NM_152899	ENSG00000104951	IL4I1	FIG1|LAAO|LAO|hIL4I1	interleukin 4 induced 1	protein-coding
25615	chr10	8071871	8072230	+	0	NA	intron (NM_001002295, intron 5 of 5)	intron (NM_001002295, intron 5 of 5)	17362	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
174825	chr4	48268371	48268530	+	0	NA	intron (NM_003215, intron 1 of 17)	intron (NM_003215, intron 1 of 17)	1388	NM_003215	7006		NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
113676	chr19	10394421	10395080	+	0	NA	intron (NM_007065, intron 5 of 7)	AluSp|SINE|Alu	8788	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
16061	chr1	153260701	153261830	+	0	NA	exon (NM_000427, exon 2 of 2)	exon (NM_000427, exon 2 of 2)	1578	NM_000427	4014		NM_000427	ENSG00000203782	LORICRIN	LOR	loricrin cornified envelope precursor protein	protein-coding
215306	chr7	157320851	157320950	+	0	NA	Intergenic	L1M5|LINE|L1	-16104	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
33088	chr10	110905171	110906430	+	0	NA	intron (NM_001243783, intron 1 of 2)	Charlie2b|DNA|hAT-Charlie	7710	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
213170	chr7	132429901	132430350	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	146345	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
46136	chr11	123042021	123042280	+	0	NA	Intergenic	AluY|SINE|Alu	16006	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
10363	chr1	64947021	64947580	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	19249	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
12806	chr1	109864071	109864530	+	0	NA	Intergenic	MER41B|LTR|ERV1	-46549	NM_172212	1435		NM_000757	ENSG00000184371	CSF1	CSF-1|MCSF|PG-M-CSF	colony stimulating factor 1	protein-coding
32047	chr10	101042671	101043500	+	0	NA	Intergenic	CpG	11846	NM_030971	81855		NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3|SLC56A3	sideroflexin 3	protein-coding
151962	chr22	19133521	19133900	+	0	NA	non-coding (NR_134304, exon 10 of 10)	non-coding (NR_134304, exon 10 of 10)	2402	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
17038	chr1	156076571	156077380	+	0	NA	exon (NM_001093725, exon 2 of 2)	exon (NM_001093725, exon 2 of 2)	5490	NM_001093725	92312		NM_001093725	ENSG00000254726	MEX3A	MEX-3A|RKHD4|RNF162	mex-3 RNA binding family member A	protein-coding
231791	chr9	132349721	132350500	+	0	NA	intron (NM_001351527, intron 2 of 25)	AluSz|SINE|Alu	4746	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
177123	chr4	108102221	108102480	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	64447	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
140035	chr2	231179821	231180230	+	0	NA	Intergenic	Intergenic	-18606	NM_001352759	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
129449	chr2	69507651	69507950	+	0	NA	intron (NM_001371575, intron 14 of 20)	AluSq2|SINE|Alu	12371	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
62560	chr13	99954921	99955380	+	0	NA	intron (NR_120421, intron 1 of 4)	intron (NR_120421, intron 1 of 4)	2015	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
116786	chr19	18514521	18515500	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	7060	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
142333	chr20	3680201	3680400	+	0	NA	intron (NM_025220, intron 1 of 21)	(CAGGCCC)n|Simple_repeat|Simple_repeat	1710	NM_001282447	80332		NM_025220	ENSG00000149451	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
64885	chr14	35367351	35368600	+	0	NA	Intergenic	Intergenic	36774	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
84307	chr16	30094901	30095500	+	0	NA	intron (NM_031477, intron 1 of 3)	intron (NM_031477, intron 1 of 3)	1013	NM_001145524	83719		NM_031477	ENSG00000090238	YPEL3	-	yippee like 3	protein-coding
166259	chr3	112407521	112407780	+	0	NA	Intergenic	Helitron3Na_Mam|RC|Helitron	74494	NM_005944	4345		NM_005944	ENSG00000091972	CD200	MOX1|MOX2|MRC|OX-2	CD200 molecule	protein-coding
77567	chr15	84980361	84982450	+	0	NA	promoter-TSS (NM_002605)	promoter-TSS (NM_002605)	-451	NM_002605	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
114484	chr19	12751651	12751750	+	0	NA	promoter-TSS (NM_017682)	promoter-TSS (NM_017682)	-91	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
47866	chr12	6646471	6646630	+	0	NA	exon (NM_032489, exon 3 of 10)	exon (NM_032489, exon 3 of 10)	882	NM_032489	84519		NM_032489	ENSG00000111644	ACRBP	CT23|OY-TES-1|SP32	acrosin binding protein	protein-coding
207372	chr7	44110251	44110550	+	0	NA	promoter-TSS (NR_039792)	promoter-TSS (NR_039792)	-449	NR_039792	100616346		NR_039792	ENSG00000284412	MIR4649	mir-4649	microRNA 4649	ncRNA
106442	chr18	13615651	13616630	+	0	NA	intron (NM_001003674, intron 1 of 3)	intron (NM_001003674, intron 1 of 3)	4376	NM_001276249	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
59796	chr13	30354671	30354830	+	0	NA	intron (NR_024464, intron 4 of 4)	intron (NR_024464, intron 4 of 4)	19164	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
83659	chr16	28323571	28323730	+	0	NA	3' UTR (NM_001024401, exon 4 of 4)	3' UTR (NM_001024401, exon 4 of 4)	31125	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
44575	chr11	108235401	108238300	+	0	NA	intron (NM_000051, intron 5 of 62)	intron (NM_000051, intron 5 of 62)	13321	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
231460	chr9	131282051	131282150	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-5590	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
62595	chr13	100091151	100091450	+	0	NA	intron (NM_001352607, intron 1 of 21)	intron (NM_001352607, intron 1 of 21)	2207	NR_148027	5095		NM_000282	ENSG00000175198	PCCA	-	propionyl-CoA carboxylase subunit alpha	protein-coding
226935	chr9	79605951	79606800	+	0	NA	intron (NM_001282760, intron 5 of 20)	L1PA6|LINE|L1	33198	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
188033	chr5	149654721	149655480	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	73602	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
53476	chr12	66132451	66132750	+	0	NA	intron (NR_125724, intron 1 of 1)	intron (NR_125724, intron 1 of 1)	1849	NR_125724	103625681		NR_125724	ENSG00000239335	LLPH-DT	LLPH-AS1	LLPH divergent transcript	ncRNA
127647	chr2	43150471	43150630	+	0	NA	Intergenic	Intergenic	-48105	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
183782	chr5	81856821	81857280	+	0	NA	Intergenic	Intergenic	-105797	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
158263	chr22	50317401	50317700	+	0	NA	intron (NM_001001794, intron 4 of 19)	intron (NM_001001794, intron 4 of 19)	9462	NM_001001794	414918		NM_001001794	ENSG00000205593	DENND6B	AFI1B|FAM116B	DENN domain containing 6B	protein-coding
79552	chr16	963451	963950	+	0	NA	intron (NM_001352017, intron 1 of 11)	intron (NM_001352017, intron 1 of 11)	7284	NM_022773	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
65144	chr14	45092451	45092780	+	0	NA	intron (NM_017922, intron 1 of 13)	AluSc|SINE|Alu	8499	NM_017922	55015		NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
36075	chr11	2986301	2986780	+	0	NA	intron (NM_001369380, intron 1 of 14).2	intron (NM_001369380, intron 1 of 14).2	4563	NM_001369379	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
66317	chr14	61415701	61416160	+	0	NA	intron (NM_006255, intron 2 of 13)	L1MB3|LINE|L1	94487	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
142039	chr20	1684901	1685100	+	0	NA	Intergenic	Intergenic	-27221	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
30421	chr10	78992251	78992600	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	75023	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
80036	chr16	1952671	1953150	+	0	NA	exon (NM_005061, exon 3 of 10)	exon (NM_005061, exon 3 of 10)	1779	NM_005061	6123		NM_005061	ENSG00000140986	RPL3L	CMD2D	ribosomal protein L3 like	protein-coding
220221	chr8	96270101	96270300	+	0	NA	intron (NM_014754, intron 1 of 12)	MIR|SINE|MIR	8298	NM_014754	9791		NM_014754	ENSG00000156471	PTDSS1	LMHD|PSS1|PSSA	phosphatidylserine synthase 1	protein-coding
81738	chr16	11354321	11355580	+	0	NA	Intergenic	Intergenic	9491	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
70211	chr14	100570351	100570750	+	0	NA	promoter-TSS (NM_020836)	promoter-TSS (NM_020836)	-758	NM_020836	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
51873	chr12	53491371	53491530	+	0	NA	intron (NM_006301, intron 1 of 14)	AluY|SINE|Alu	8008	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
153582	chr22	26677371	26677530	+	0	NA	TTS (NR_003491)	TTS (NR_003491)	4607	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
81569	chr16	9133751	9133850	+	0	NA	Intergenic	AluSx4|SINE|Alu	42156	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
85561	chr16	53448371	53448880	+	0	NA	intron (NM_001323609, intron 4 of 20)	AluSz6|SINE|Alu	13006	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
60696	chr13	43878271	43878430	+	0	NA	promoter-TSS (NM_001128303)	promoter-TSS (NM_001128303)	-828	NM_001128303	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
188339	chr5	151254471	151254630	+	0	NA	intron (NM_001167607, intron 1 of 3)	L1MA7|LINE|L1	1365	NM_001167607	2760		NM_000405	ENSG00000196743	GM2A	GM2-AP|GM2AP|SAP-3	ganglioside GM2 activator	protein-coding
195910	chr6	41733801	41735000	+	0	NA	promoter-TSS (NM_001271945)	promoter-TSS (NM_001271945)	1	NM_001271945	7942		NM_007162	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
37485	chr11	18393871	18395300	+	0	NA	promoter-TSS (NM_001165415)	promoter-TSS (NM_001165415)	22	NM_001165415	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
7313	chr1	32612021	32612650	+	0	NA	Intergenic	Intergenic	38215	NM_001366278	339487		NM_178547	ENSG00000176261	ZBTB8OS	ARCH|ARCH2	zinc finger and BTB domain containing 8 opposite strand	protein-coding
79044	chr16	81171	81330	+	0	NA	intron (NM_001015054, intron 2 of 3)	intron (NM_001015054, intron 2 of 3)	3025	NM_001015052	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
146695	chr20	50544721	50545380	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	34667	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138195	chr2	202666421	202666980	+	0	NA	intron (NM_173511, intron 1 of 7)	AluSc8|SINE|Alu	31731	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
13957	chr1	120358421	120359430	+	0	NA	Intergenic	Intergenic	-56102	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
29639	chr10	71844671	71845030	+	0	NA	intron (NM_002778, intron 1 of 13)	L1ME3C|LINE|L1	6401	NM_002778	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
24985	chr10	3092051	3092350	+	0	NA	intron (NM_001345944, intron 2 of 21)	intron (NM_001345944, intron 2 of 21)	-12409	NM_001323074	5214		NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
78500	chr15	92926001	92926280	+	0	NA	intron (NM_001042572, intron 3 of 12)	AluJr|SINE|Alu	21741	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
162729	chr3	49023871	49024780	+	0	NA	TTS (NM_199074)	TTS (NM_199074)	2204	NM_199069	25915		NM_199069	ENSG00000178057	NDUFAF3	2P1|C3orf60|E3-3|MC1DN18	NADH:ubiquinone oxidoreductase complex assembly factor 3	protein-coding
147137	chr20	54649471	54649650	+	0	NA	intron (NM_177959, intron 7 of 7)	intron (NM_177959, intron 7 of 7)	173967	NM_001294161	55816		NM_018431	ENSG00000101134	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
13435	chr1	114339351	114340050	+	0	NA	Intergenic	LTR16A|LTR|ERVL	171503	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
238945	chrX	154885821	154887630	+	0	NA	promoter-TSS (NM_019863)	promoter-TSS (NM_019863)	350	NM_001007523	474383		NM_001007523	ENSG00000288709	F8A2	HAP40	coagulation factor VIII associated 2	protein-coding
172243	chr4	1350451	1350550	+	0	NA	intron (NM_001317935, intron 3 of 13)	intron (NM_001317935, intron 3 of 13)	2944	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
130890	chr2	87426401	87426800	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-28827	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
132431	chr2	105833021	105833500	+	0	NA	intron (NM_001004722, intron 2 of 3)	AluSx|SINE|Alu	-18587	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
176002	chr4	82136351	82136730	+	0	NA	Intergenic	L1MC5a|LINE|L1	237451	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
58140	chr12	124906721	124907630	+	0	NA	Intergenic	Intergenic	7475	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
84936	chr16	31302021	31302330	+	0	NA	intron (NM_000632, intron 14 of 29)	intron (NM_000632, intron 14 of 29)	42200	NM_000632	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
38913	chr11	47421001	47421850	+	0	NA	intron (NM_002804, intron 8 of 11)	intron (NM_002804, intron 8 of 11)	5014	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
145096	chr20	38725351	38726450	+	0	NA	intron (NM_080552, intron 1 of 1)	CpG	1414	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
27021	chr10	26844601	26845050	+	0	NA	intron (NM_001178116, intron 1 of 11)	intron (NM_001178116, intron 1 of 11)	16133	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
200608	chr6	136753551	136754480	+	0	NA	intron (NM_005923, intron 1 of 29)	AluSx1|SINE|Alu	-30032	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
45264	chr11	118002711	118003950	+	0	NA	TTS (NR_026691)	TTS (NR_026691)	16936	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
172327	chr4	1685471	1685950	+	0	NA	Intergenic	Intergenic	-1397	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
28754	chr10	62018601	62019400	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-30357	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
205516	chr7	18312451	18312750	+	0	NA	intron (NM_001321896, intron 1 of 12)	intron (NM_001321896, intron 1 of 12)	22508	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
165987	chr3	108088621	108089100	+	0	NA	intron (NM_198793, intron 1 of 8)	intron (NM_198793, intron 1 of 8)	2171	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
107973	chr18	58572771	58572930	+	0	NA	intron (NM_052947, intron 4 of 12)	L1MD2|LINE|L1	-27770	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
174547	chr4	40206401	40206880	+	0	NA	intron (NM_001278362, intron 2 of 3)	intron (NM_001278362, intron 2 of 3)	9609	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
229424	chr9	121340751	121341050	+	0	NA	non-coding (NR_073037, exon 8 of 8)	non-coding (NR_073037, exon 8 of 8)	29350	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
205831	chr7	24825151	24825650	+	0	NA	intron (NM_015550, intron 16 of 22)	L2a|LINE|L2	67221	NM_145322	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
85292	chr16	48621221	48622000	+	0	NA	Intergenic	Intergenic	-11430	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
31710	chr10	97671071	97671430	+	0	NA	intron (NM_018425, intron 8 of 8)	intron (NM_018425, intron 8 of 8)	15991	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
200958	chr6	139187521	139188130	+	0	NA	Intergenic	MIRb|SINE|MIR	52745	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
204390	chr7	3033601	3034000	+	0	NA	intron (NM_001324281, intron 1 of 25)	L2|LINE|L2	10067	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
192620	chr6	26088871	26089030	+	0	NA	intron (NR_144383, intron 1 of 1)	L2a|LINE|L2	1521	NM_139004	3077		NM_000410	ENSG00000010704	HFE	HFE1|HH|HLA-H|MVCD7|TFQTL2	homeostatic iron regulator	protein-coding
20085	chr1	186372401	186372600	+	0	NA	intron (NM_003292, intron 2 of 50)	AluSz6|SINE|Alu	2753	NM_003292	7175		NM_003292	ENSG00000047410	TPR	MRT79	translocated promoter region, nuclear basket protein	protein-coding
76778	chr15	77005271	77005780	+	0	NA	intron (NR_135552, intron 1 of 11)	L1MB4|LINE|L1	10399	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
82138	chr16	14756201	14756680	+	0	NA	intron (NM_001277324, intron 2 of 7).2	intron (NM_001277324, intron 2 of 7).2	5627	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
101771	chr17	73091971	73093330	+	0	NA	promoter-TSS (NM_001352692)	promoter-TSS (NM_001352692)	38	NM_001352691	201266		NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP-11|ZIP11	solute carrier family 39 member 11	protein-coding
155075	chr22	37556651	37557000	+	0	NA	Intergenic	Intergenic	-3655	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
131258	chr2	96034901	96035380	+	0	NA	5' UTR (NM_001321528, exon 1 of 22)	5' UTR (NM_001321528, exon 1 of 22)	105	NM_001321530	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
183807	chr5	82434851	82434950	+	0	NA	Intergenic	L1PA2|LINE|L1	155438	NM_001017971	92270		NM_001017971		ATP6AP1L	-	ATPase H+ transporting accessory protein 1 like (pseudogene)	pseudo
154473	chr22	35582951	35583470	+	0	NA	Intergenic	Intergenic	34119	NM_005368	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
36820	chr11	9748351	9748800	+	0	NA	intron (NM_001297714, intron 9 of 10)	LTR41|LTR|ERVL	-9718	NR_036485	283104		NR_036485	ENSG00000246273	SBF2-AS1	-	SBF2 antisense RNA 1	ncRNA
218724	chr8	58713921	58714700	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-54457	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
852	chr1	1611051	1611450	+	0	NA	Intergenic	LTR42|LTR|ERVL	-4165	NM_001170688	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
216048	chr8	9760471	9760750	+	0	NA	intron (NM_003747, intron 20 of 26)	intron (NM_003747, intron 20 of 26)	18938	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
153786	chr22	29591721	29591980	+	0	NA	Intergenic	AluSp|SINE|Alu	-10737	NM_003634	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
220433	chr8	100301851	100302630	+	0	NA	promoter-TSS (NM_001353837)	promoter-TSS (NM_001353837)	-47	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
74343	chr15	58598271	58598830	+	0	NA	intron (NM_001320570, intron 14 of 14)	intron (NM_001320570, intron 14 of 14)	95057	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
98042	chr17	45434151	45434480	+	0	NA	Intergenic	MIRb|SINE|MIR	-1445	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
135682	chr2	168687371	168687530	+	0	NA	intron (NM_203463, intron 4 of 9)	MER5A1|DNA|hAT-Charlie	98979	NR_045786	100861402		NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
1638	chr1	3777921	3778730	+	0	NA	TTS (NM_020710)	TTS (NM_020710)	5576	NM_001163724	388588		NM_001163724	ENSG00000235169	SMIM1	Vel	small integral membrane protein 1 (Vel blood group)	protein-coding
212455	chr7	128425771	128426330	+	0	NA	Intergenic	Intergenic	-16068	NM_183243	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
60859	chr13	45675321	45675400	+	0	NA	Intergenic	AluY|SINE|Alu	25824	NR_125786	103752581		NR_125786		LINC01055	-	long intergenic non-protein coding RNA 1055	ncRNA
79756	chr16	1354671	1355950	+	0	NA	intron (NM_032520, intron 3 of 10)	intron (NM_032520, intron 3 of 10)	3379	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
83351	chr16	25051821	25052500	+	0	NA	Intergenic	Intergenic	-14727	NR_135196	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
181966	chr5	55102311	55103130	+	0	NA	promoter-TSS (NM_006144)	promoter-TSS (NM_006144)	74	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
82831	chr16	21497271	21497700	+	0	NA	intron (NR_027155, intron 1 of 28)	intron (NR_027155, intron 1 of 28)	-4041	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
137392	chr2	196224801	196225400	+	0	NA	intron (NM_001348768, intron 23 of 28)	intron (NM_001348768, intron 23 of 28)	-34924	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
99377	chr17	49963171	49963400	+	0	NA	Intergenic	Intergenic	-5905	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
98554	chr17	47692001	47692400	+	0	NA	Intergenic	Intergenic	-3064	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
81493	chr16	8946571	8946730	+	0	NA	intron (NM_003470, intron 1 of 30)	L1MD|LINE|L1	3004	NR_135826	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
25930	chr10	11333801	11334000	+	0	NA	3' UTR (NM_001326324, exon 15 of 15)	3' UTR (NM_001326324, exon 15 of 15)	10774	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
224068	chr9	4020851	4020950	+	0	NA	intron (NM_001042413, intron 4 of 10)	intron (NM_001042413, intron 4 of 10)	122254	NR_026663	84850		NM_032764	ENSG00000237009	GLIS3-AS1	C9orf70	GLIS3 antisense RNA 1	ncRNA
76941	chr15	78076741	78078250	+	0	NA	exon (NM_015079, exon 1 of 13)	exon (NM_015079, exon 1 of 13)	157	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
112271	chr19	5804801	5805400	+	0	NA	promoter-TSS (NM_004558)	promoter-TSS (NM_004558)	33	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
132347	chr2	105734101	105734500	+	0	NA	Intergenic	L1MEg|LINE|L1	-10612	NM_003581	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
202349	chr6	157585251	157585700	+	0	NA	intron (NM_024630, intron 2 of 8)	intron (NM_024630, intron 2 of 8)	56343	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
218623	chr8	56113001	56113900	+	0	NA	exon (NM_005372, exon 1 of 1)	exon (NM_005372, exon 1 of 1)	532	NM_005372	4342		NM_005372	ENSG00000172680	MOS	MSV|OZEMA20	MOS proto-oncogene, serine/threonine kinase	protein-coding
163874	chr3	52502071	52503430	+	0	NA	intron (NM_015136, intron 6 of 68)	intron (NM_015136, intron 6 of 68)	7412	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
94290	chr17	28723521	28723780	+	0	NA	promoter-TSS (NR_000009)	promoter-TSS (NR_000009)	-31	NR_000009	26772		NR_000009	ENSG00000238597	SNORD4B	RNU101B|Z17B	small nucleolar RNA, C/D box 4B	snoRNA
28046	chr10	43257351	43257700	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	9540	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
115554	chr19	15550921	15553050	+	0	NA	3' UTR (NM_173483, exon 14 of 14)	3' UTR (NM_173483, exon 14 of 14)	43460	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
238671	chrX	154032621	154032880	+	0	NA	intron (NM_001110792, intron 1 of 2)	intron (NM_001110792, intron 1 of 2)	-12761	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
125501	chr2	12702101	12702500	+	0	NA	Intergenic	Intergenic	-14572	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
180278	chr5	1799051	1800200	+	0	NA	intron (NM_032479, intron 1 of 1)	CpG	212	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
99668	chr17	50727171	50727480	+	0	NA	intron (NM_001330330, intron 1 of 10)	MSTB1|LTR|ERVL-MaLR	7722	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
96029	chr17	39400571	39402100	+	0	NA	intron (NM_001370208, intron 1 of 14)	CpG	291	NM_032875	84961		NM_032875	ENSG00000108306	FBXL20	Fbl2|Fbl20	F-box and leucine rich repeat protein 20	protein-coding
21315	chr1	204512901	204514080	+	0	NA	Intergenic	AluSc|SINE|Alu	-2889	NM_001204172	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
132223	chr2	102258401	102258900	+	0	NA	Intergenic	Intergenic	-52852	NM_001282408	9173		NM_003856	ENSG00000115602	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor like 1	protein-coding
19328	chr1	173478471	173478630	+	0	NA	intron (NM_004905, intron 1 of 4)	intron (NM_004905, intron 1 of 4)	1215	NM_004905	9588		NM_004905	ENSG00000117592	PRDX6	1-Cys|AOP2|HEL-S-128m|LPCAT-5|NSGPx|PRX|aiPLA2|p29	peroxiredoxin 6	protein-coding
156676	chr22	41657621	41658850	+	0	NA	intron (NM_001288976, intron 10 of 12)	intron (NM_001288976, intron 10 of 12)	30632	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
205712	chr7	23461801	23462200	+	0	NA	intron (NM_006547, intron 2 of 14)	MLT1H|LTR|ERVL-MaLR	8491	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
32110	chr10	101215751	101215850	+	0	NA	Intergenic	Intergenic	13160	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
166883	chr3	124032851	124033530	+	0	NA	Intergenic	CpG	-41020	NM_001317774	54763		NM_017578	ENSG00000065371	ROPN1	CT91|ODF6|RHPNAP1|ROPN1A|ropporin	rhophilin associated tail protein 1	protein-coding
52943	chr12	57450651	57451050	+	0	NA	3' UTR (NM_005538, exon 2 of 2)	3' UTR (NM_005538, exon 2 of 2)	-4457	NM_031479	83729		NM_031479	ENSG00000139269	INHBE	-	inhibin subunit beta E	protein-coding
17255	chr1	156371301	156371500	+	0	NA	non-coding (NR_146763, exon 2 of 12)	non-coding (NR_146763, exon 2 of 12)	2189	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
134527	chr2	143605851	143606350	+	0	NA	intron (NM_018460, intron 11 of 13)	intron (NM_018460, intron 11 of 13)	-330967	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
204529	chr7	4805101	4805750	+	0	NA	intron (NM_018059, intron 10 of 14)	intron (NM_018059, intron 10 of 14)	-16786	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
94265	chr17	28697451	28697550	+	0	NA	intron (NM_003170, intron 30 of 36)	intron (NM_003170, intron 30 of 36)	12604	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
199860	chr6	127791701	127792130	+	0	NA	intron (NM_001010923, intron 4 of 5).2	MER52A|LTR|ERV1	63273	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
200345	chr6	133968771	133968930	+	0	NA	intron (NM_004865, intron 1 of 6)	AluSx1|SINE|Alu	15626	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
150964	chr21	44319651	44319750	+	0	NA	intron (NM_001002021, intron 14 of 24)	intron (NM_001002021, intron 14 of 24)	18638	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
10001	chr1	55190171	55190480	+	0	NA	intron (NM_015306, intron 1 of 67)	intron (NM_015306, intron 1 of 67)	25039	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
147028	chr20	53600821	53601080	+	0	NA	Intergenic	AluSg|SINE|Alu	-7111	NM_006526	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
200870	chr6	138795851	138796330	+	0	NA	promoter-TSS (NM_001195037)	promoter-TSS (NM_001195037)	-21	NM_001195037	345930		NM_001077706	ENSG00000203734	ECT2L	ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5	epithelial cell transforming 2 like	protein-coding
224096	chr9	4518151	4518530	+	0	NA	intron (NM_004170, intron 1 of 11)	intron (NM_004170, intron 1 of 11)	27872	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
58834	chr12	132856971	132857330	+	0	NA	intron (NM_018223, intron 9 of 17)	intron (NM_018223, intron 9 of 17)	-28281	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
206202	chr7	28209851	28210150	+	0	NA	intron (NR_034097, intron 2 of 3)	MADE1|DNA|TcMar-Mariner	-29205	NM_175061	221895		NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
43153	chr11	75328671	75329680	+	0	NA	intron (NM_020251, intron 1 of 14)	AluJb|SINE|Alu	6011	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
197406	chr6	73516851	73517500	+	0	NA	3' UTR (NM_001402, exon 8 of 8)	3' UTR (NM_001402, exon 8 of 8)	1263	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
202043	chr6	153130951	153131630	+	0	NA	promoter-TSS (NM_012419)	promoter-TSS (NM_012419)	-8	NM_012419	26575		NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G protein signaling 17	protein-coding
136654	chr2	180008471	180008630	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	-1253	NM_020943	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
16303	chr1	154174601	154174800	+	0	NA	intron (NM_001278188, intron 1 of 6)	AluSz6|SINE|Alu	3504	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
68228	chr14	76932421	76932680	+	0	NA	Intergenic	L2c|LINE|L2	-27088	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
148154	chr20	63515621	63516080	+	0	NA	Intergenic	L1MB7|LINE|L1	-4891	NR_148427	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
53115	chr12	57802751	57802850	+	0	NA	TTS (NM_001172697)	TTS (NM_001172697)	13269	NM_006576	10677		NM_006576	ENSG00000135407	AVIL	ADVIL|DOC6|NPHS21|p92	advillin	protein-coding
73785	chr15	45704001	45704280	+	0	NA	Intergenic	Intergenic	-1055	NR_135680	105370802		NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA
237993	chrX	134550821	134551380	+	0	NA	intron (NR_038998, intron 1 of 2)	CpG	1076	NR_038998	100506757		NR_038998	ENSG00000227060	LINC00629	LINC00629A|LINC00629B|LINC00629C|LINC00629D	long intergenic non-protein coding RNA 629	ncRNA
229209	chr9	114844871	114845030	+	0	NA	Intergenic	L1PA16|LINE|L1	-38911	NM_005118	9966		NM_005118	ENSG00000181634	TNFSF15	TL1|TL1A|TNLG1B|VEGI|VEGI192A	TNF superfamily member 15	protein-coding
59261	chr13	24122651	24122750	+	0	NA	intron (NM_001286792, intron 3 of 14)	intron (NM_001286792, intron 3 of 14)	-38020	NM_153023	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
169635	chr3	171312951	171313450	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	147205	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
54204	chr12	79888201	79888600	+	0	NA	intron (NM_001143885, intron 2 of 25)	intron (NM_001143885, intron 2 of 25)	25511	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
118749	chr19	38336301	38336500	+	0	NA	intron (NM_001330496, intron 1 of 27)	CpG	570	NM_021185	57828		NM_021185	ENSG00000099338	CATSPERG	C19orf15	cation channel sperm associated auxiliary subunit gamma	protein-coding
134370	chr2	136240151	136240450	+	0	NA	Intergenic	Intergenic	-122151	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
24059	chr1	235306471	235306950	+	0	NA	intron (NM_016374, intron 2 of 23)	AluSx3|SINE|Alu	-20506	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
168091	chr3	138322221	138322480	+	0	NA	intron (NM_001349023, intron 1 of 8)	intron (NM_001349023, intron 1 of 8)	7501	NM_001349025	347736		NM_178130	ENSG00000181322	NME9	NM23-H9|NXL2|TXL-2|TXL2|TXNDC6	NME/NM23 family member 9	protein-coding
238358	chrX	149831771	149832130	+	0	NA	intron (NR_109813, intron 1 of 2)	HERVIP10B3-int|LTR|ERV1	6242	NR_109813	101241891		NR_109813	ENSG00000280752	LINC00850	KUCG1	long intergenic non-protein coding RNA 850	ncRNA
223558	chr8	144258071	144258230	+	0	NA	intron (NM_032450, intron 35 of 43)	intron (NM_032450, intron 35 of 43)	4587	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
39236	chr11	57657121	57658600	+	0	NA	promoter-TSS (NM_006831)	promoter-TSS (NM_006831)	98	NM_006831	10978		NM_006831	ENSG00000172409	CLP1	HEAB|hClp1	cleavage factor polyribonucleotide kinase subunit 1	protein-coding
136904	chr2	189593601	189593800	+	0	NA	Intergenic	Intergenic	-12914	NM_014585	30061		NM_014585	ENSG00000138449	SLC40A1	FPN|FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3	solute carrier family 40 member 1	protein-coding
134845	chr2	148657051	148657150	+	0	NA	intron (NM_015630, intron 1 of 13)	intron (NM_015630, intron 1 of 13)	12349	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
14901	chr1	147079401	147079600	+	0	NA	Intergenic	CpG	5256	NR_121645	101447996		NR_121645	ENSG00000286172	RNVU1-8	RNU1-145|vU1.8	RNA, variant U1 small nuclear 8	snRNA
167738	chr3	131399051	131399150	+	0	NA	Intergenic	MIRb|SINE|MIR	17326	NM_152395	131870		NM_152395	ENSG00000198585	NUDT16	-	nudix hydrolase 16	protein-coding
136753	chr2	181309751	181310230	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	-4338	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
139550	chr2	224911221	224911480	+	0	NA	intron (NM_001363762, intron 3 of 55)	intron (NM_001363762, intron 3 of 55)	35699	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
19964	chr1	184903801	184904200	+	0	NA	intron (NM_052966, intron 1 of 13)	AluSz|SINE|Alu	70508	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
137143	chr2	191054221	191054480	+	0	NA	intron (NM_003151, intron 14 of 23)	L1ME4a|LINE|L1	32824	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
175163	chr4	55819771	55819930	+	0	NA	promoter-TSS (NM_001351575)	promoter-TSS (NM_001351575)	60	NM_001351574	644145		NM_001351574	ENSG00000250821	EXOC1L	-	exocyst complex component 1 like	protein-coding
116582	chr19	18249251	18249900	+	0	NA	TTS (NR_036575)	TTS (NR_036575)	-1375	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
14372	chr1	144145701	144146500	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	102105	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
104544	chr17	81296001	81297000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1193	NM_138570	124565		NM_138570	ENSG00000157637	SLC38A10	PP1744|SNAT10	solute carrier family 38 member 10	protein-coding
83896	chr16	28981121	28982250	+	0	NA	intron (NM_001142451, intron 6 of 10)	intron (NM_001142451, intron 6 of 10)	-3118	NM_001014989	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
143488	chr20	31071501	31072400	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-185714	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
210459	chr7	100125801	100128800	+	0	NA	intron (NM_203397, intron 1 of 1)	CpG	333	NM_203397	255374		NM_203397	ENSG00000214309	MBLAC1	-	metallo-beta-lactamase domain containing 1	protein-coding
65830	chr14	54894171	54894550	+	0	NA	intron (NM_001024024, intron 1 of 6)	MLT1C|LTR|ERVL-MaLR	8464	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
95574	chr17	36942721	36943900	+	0	NA	3' UTR (NM_005568, exon 5 of 5)	3' UTR (NM_005568, exon 5 of 5)	-5644	NM_012138	26574		NM_012138	ENSG00000275700	AATF	BFR2|CHE-1|CHE1|DED	apoptosis antagonizing transcription factor	protein-coding
96197	chr17	39752351	39752880	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	12648	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
102324	chr17	75398601	75399200	+	0	NA	intron (NM_203506, intron 1 of 4)	AluSx1|SINE|Alu	6778	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
181998	chr5	55229771	55230650	+	0	NA	TTS (NR_125348)	TTS (NR_125348)	2781	NR_125348	10309		NM_021147	ENSG00000152669	CCNO	CCNU|CILD29|UDG2	cyclin O	protein-coding
196161	chr6	42555501	42556450	+	0	NA	Intergenic	MER51A|LTR|ERV1	-8047	NM_015255	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
18189	chr1	160836271	160836630	+	0	NA	intron (NM_001166664, intron 4 of 7)	intron (NM_001166664, intron 4 of 7)	26437	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
111647	chr19	4196921	4197180	+	0	NA	intron (NM_133475, intron 2 of 21)	MIR|SINE|MIR	13696	NM_133475	170961		NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
59592	chr13	27561451	27561750	+	0	NA	intron (NM_153371, intron 5 of 9)	intron (NM_153371, intron 5 of 9)	58929	NM_153371	222484		NM_153371	ENSG00000139517	LNX2	PDZRN1	ligand of numb-protein X 2	protein-coding
143615	chr20	31721701	31722070	+	0	NA	exon (NM_138578, exon 2 of 3)	exon (NM_138578, exon 2 of 3)	378	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
58017	chr12	124391001	124391480	+	0	NA	intron (NM_001077261, intron 18 of 47)	intron (NM_001077261, intron 18 of 47)	-53998	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
193045	chr6	28580471	28580630	+	0	NA	intron (NM_001329616, intron 3 of 5)	intron (NM_001329616, intron 3 of 5)	6748	NM_052923	114821		NM_052923	ENSG00000232040	SCAND3	Buster4|FAM200D|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
183586	chr5	80184651	80184750	+	0	NA	intron (NM_001174072, intron 2 of 11)	intron (NM_001174072, intron 2 of 11)	71348	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
208175	chr7	64689671	64690230	+	0	NA	intron (NM_001013746, intron 2 of 4)	intron (NM_001013746, intron 2 of 4)	10886	NR_106898	102465505		NR_106898	ENSG00000275667	MIR6839	hsa-mir-6839	microRNA 6839	ncRNA
29331	chr10	69406701	69407350	+	0	NA	intron (NM_001057, intron 4 of 4)	intron (NM_001057, intron 4 of 4)	9893	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
20959	chr1	202318521	202318980	+	0	NA	exon (NM_001017403, exon 18 of 18)	exon (NM_001017403, exon 18 of 18)	23186	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
53534	chr12	67271271	67271650	+	0	NA	intron (NM_018448, intron 1 of 14)	intron (NM_018448, intron 1 of 14)	2102	NM_001329676	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
57736	chr12	122894321	122895290	+	0	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	1319	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
226706	chr9	75123071	75123230	+	0	NA	intron (NM_012383, intron 2 of 9)	AluYe5|SINE|Alu	34636	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
46672	chr11	128726721	128727350	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-31012	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
129839	chr2	72862321	72862950	+	0	NA	Intergenic	CpG	-24773	NM_003124	6697		NM_003124	ENSG00000116096	SPR	SDR38C1	sepiapterin reductase	protein-coding
92653	chr17	10609101	10609300	+	0	NA	intron (NR_125367, intron 8 of 10)	MER113A|DNA|hAT-Charlie	48109	NM_002470	4621		NM_002470	ENSG00000109063	MYH3	CPSFS1A|CPSFS1B|CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE	myosin heavy chain 3	protein-coding
164372	chr3	58187621	58188230	+	0	NA	Intergenic	Intergenic	-17290	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
18387	chr1	161392501	161393030	+	0	NA	Intergenic	Intergenic	-24889	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
96399	chr17	40139821	40141480	+	0	NA	exon (NM_007359, exon 1 of 14)	exon (NM_007359, exon 1 of 14)	113	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
174568	chr4	40227201	40227730	+	0	NA	intron (NM_001278360, intron 2 of 3)	MIR3|SINE|MIR	30434	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
183978	chr5	88729401	88729830	+	0	NA	intron (NM_001364357, intron 4 of 6)	intron (NM_001364357, intron 4 of 6)	-38574	NR_152232	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
162538	chr3	48629921	48630180	+	0	NA	intron (NM_134263, intron 12 of 20)	intron (NM_134263, intron 12 of 20)	3648	NR_106882	102465495		NR_106882	ENSG00000284364	MIR6824	hsa-mir-6824	microRNA 6824	ncRNA
70842	chr14	103697501	103698280	+	0	NA	3' UTR (NM_005432, exon 10 of 10)	3' UTR (NM_005432, exon 10 of 10)	17561	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
86710	chr16	67546751	67547630	+	0	NA	TTS (NM_001193522)	TTS (NM_001193522)	9728	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
37761	chr11	32089071	32089430	+	0	NA	Intergenic	L2c|LINE|L2	-1824	NM_002901	5954		NM_002901	ENSG00000049449	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1	protein-coding
156649	chr22	41631871	41632280	+	0	NA	intron (NM_001288977, intron 3 of 12)	SVA_D|Retroposon|SVA	10780	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
106832	chr18	24013921	24015700	+	0	NA	promoter-TSS (NM_001243425)	promoter-TSS (NM_001243425)	56	NM_001135993	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
887	chr1	1651971	1652130	+	0	NA	intron (NM_001291345, intron 4 of 19)	intron (NM_001291345, intron 4 of 19)	6954	NM_033487	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
21233	chr1	204205101	204205300	+	0	NA	intron (NM_198447, intron 1 of 4)	L1MB3|LINE|L1	-8709	NM_002256	3814		NM_002256	ENSG00000170498	KISS1	HH13|KiSS-1	KiSS-1 metastasis suppressor	protein-coding
145229	chr20	38920351	38921080	+	0	NA	3' UTR (NM_015568, exon 11 of 11)	3' UTR (NM_015568, exon 11 of 11)	-5702	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
190888	chr6	2751901	2752230	+	0	NA	intron (NM_001347872, intron 1 of 12)	intron (NM_001347872, intron 1 of 12)	-1143	NM_001012418	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
197094	chr6	56964201	56964400	+	0	NA	intron (NM_001318539, intron 1 of 3)	intron (NM_001318539, intron 1 of 3)	9193	NM_152731	221336		NM_152731	ENSG00000151917	BEND6	C6orf65	BEN domain containing 6	protein-coding
19098	chr1	171484151	171484330	+	0	NA	Intergenic	AluJo|SINE|Alu	-1290	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
97918	chr17	45141071	45142030	+	0	NA	intron (NM_001135705, intron 9 of 9)	AluJo|SINE|Alu	5863	NM_001135707	79777		NM_024722	ENSG00000181513	ACBD4	HMFT0700	acyl-CoA binding domain containing 4	protein-coding
224404	chr9	14616551	14616650	+	0	NA	non-coding (NR_148717, exon 12 of 12)	non-coding (NR_148717, exon 12 of 12)	76832	NR_148714	340481		NM_178566	ENSG00000175893	ZDHHC21	DHHC-21|DHHC21|DNZ1|HSPC097	zinc finger DHHC-type palmitoyltransferase 21	protein-coding
214451	chr7	150271901	150272100	+	0	NA	intron (NR_147012, intron 6 of 10)	intron (NR_147012, intron 6 of 10)	30980	NM_001164459	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
22205	chr1	212464701	212464900	+	0	NA	Intergenic	Intergenic	31880	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
127940	chr2	46536951	46537580	+	0	NA	intron (NM_001371283, intron 1 of 3)	intron (NM_001371283, intron 1 of 3)	-5225	NM_012249	23433		NM_012249	ENSG00000119729	RHOQ	ARHQ|HEL-S-42|RASL7A|TC10|TC10A	ras homolog family member Q	protein-coding
202376	chr6	157818801	157819000	+	0	NA	Intergenic	Intergenic	-4346	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
127696	chr2	43216601	43216980	+	0	NA	Intergenic	AluJb|SINE|Alu	9816	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
6510	chr1	28516821	28517250	+	0	NA	intron (NM_001381865, intron 4 of 12)	AluSq2|SINE|Alu	-1191	NM_001048195	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
227190	chr9	87944751	87944850	+	0	NA	Intergenic	(GTG)n|Simple_repeat|Simple_repeat	-5540	NR_149022	497256		NR_149022		LOC497256	-	uncharacterized LOC497256	ncRNA
36569	chr11	6652721	6653530	+	0	NA	intron (NM_003737, intron 1 of 20)	L2c|LINE|L2	2684	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
44603	chr11	108498301	108499130	+	0	NA	promoter-TSS (NM_001363503)	promoter-TSS (NM_001363503)	-331	NM_153705	143888		NM_153705	ENSG00000178202	POGLUT3	KDELC2	protein O-glucosyltransferase 3	protein-coding
88596	chr16	85585651	85585750	+	0	NA	Intergenic	MIR3|SINE|MIR	-25709	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
45497	chr11	118633821	118634300	+	0	NA	intron (NM_001144759, intron 9 of 20)	intron (NM_001144759, intron 9 of 20)	-9940	NR_106773	102466719		NR_106773	ENSG00000284246	MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
81075	chr16	4338921	4339380	+	0	NA	3' UTR (NM_032575, exon 7 of 7).2	3' UTR (NM_032575, exon 7 of 7).2	-10810	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
7900	chr1	36650451	36650780	+	0	NA	Intergenic	Intergenic	-167301	NM_156039	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
4591	chr1	22077021	22077350	+	0	NA	intron (NM_001039802, intron 2 of 6)	intron (NM_001039802, intron 2 of 6)	24476	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
114275	chr19	11580901	11581100	+	0	NA	Intergenic	Intergenic	-2025	NM_001111035	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
125386	chr2	11343351	11345330	+	0	NA	5' UTR (NM_004850, exon 1 of 33)	5' UTR (NM_004850, exon 1 of 33)	296	NM_004850	9475		NM_004850	ENSG00000134318	ROCK2	ROCK-II	Rho associated coiled-coil containing protein kinase 2	protein-coding
36738	chr11	9264901	9265880	+	0	NA	promoter-TSS (NM_015213)	promoter-TSS (NM_015213)	-40	NM_015213	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
51363	chr12	51815671	51815830	+	0	NA	Intergenic	Intergenic	16167	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
169552	chr3	170189071	170189780	+	0	NA	Intergenic	Intergenic	-7692	NM_024947	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
165569	chr3	101542821	101543650	+	0	NA	Intergenic	Intergenic	-18633	NM_017819	54931		NM_017819	ENSG00000174173	TRMT10C	COXPD30|HNYA|MRPP1|RG9MTD1	tRNA methyltransferase 10C, mitochondrial RNase P subunit	protein-coding
23163	chr1	226735501	226735730	+	0	NA	exon (NM_002221, exon 2 of 8)	exon (NM_002221, exon 2 of 8)	3560	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
32451	chr10	102634151	102634250	+	0	NA	TTS (NM_016169)	TTS (NM_016169)	-10279	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
47376	chr12	2642251	2642550	+	0	NA	intron (NM_001129836, intron 31 of 46).2	intron (NM_001129836, intron 31 of 46).2	29820	NR_046579	100874235		NR_046579	ENSG00000256271	CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
127668	chr2	43175951	43176750	+	0	NA	Intergenic	AluSc5|SINE|Alu	50256	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
179661	chr4	189904501	189904780	+	0	NA	intron (NR_149038, intron 2 of 2)	intron (NR_149038, intron 2 of 2)	23125	NR_132380	105377617		NR_132380	ENSG00000250666	LINC01596	-	long intergenic non-protein coding RNA 1596	ncRNA
167390	chr3	128878821	128880730	+	0	NA	non-coding (NR_033426, exon 1 of 18)	non-coding (NR_033426, exon 1 of 18)	155	NM_014049	28976		NM_014049	ENSG00000177646	ACAD9	MC1DN20|NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
188682	chr5	157276521	157276800	+	0	NA	intron (NM_014376, intron 1 of 30)	MIR|SINE|MIR	7336	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
42380	chr11	68840761	68841200	+	0	NA	intron (NM_001031847, intron 1 of 18)	CpG	936	NM_001876	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
132841	chr2	110755501	110755780	+	0	NA	intron (NM_001371254, intron 1 of 18)	intron (NM_001371254, intron 1 of 18)	23067	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
46225	chr11	124135551	124135650	+	0	NA	intron (NM_001130142, intron 12 of 18)	AluYa5|SINE|Alu	20150	NM_001130142	4013		NM_014622	ENSG00000110002	VWA5A	BCSC-1|BCSC1|LOH11CR2A	von Willebrand factor A domain containing 5A	protein-coding
110020	chr19	1444781	1446400	+	0	NA	Intergenic	CpG	-4531	NM_005883	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
158328	chr22	50441571	50441730	+	0	NA	intron (NM_001351641, intron 22 of 23)	intron (NM_001351641, intron 22 of 23)	33385	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
200521	chr6	136173771	136173930	+	0	NA	exon (NM_018945, exon 9 of 13)	exon (NM_018945, exon 9 of 13)	76461	NM_001318738	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
195789	chr6	40845651	40845750	+	0	NA	Intergenic	Intergenic	177580	NR_110873	101929555		NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
165680	chr3	101869801	101870380	+	0	NA	Intergenic	Intergenic	20576	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
17614	chr1	156922551	156922650	+	0	NA	intron (NM_144702, intron 1 of 14)	intron (NM_144702, intron 1 of 14)	1968	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
65728	chr14	53113451	53113550	+	0	NA	intron (NM_030637, intron 1 of 11)	L1PA10|LINE|L1	39823	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
44069	chr11	95443101	95443730	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-210940	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
205441	chr7	17015421	17015680	+	0	NA	Intergenic	Intergenic	-133567	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
17775	chr1	159076591	159077980	+	0	NA	promoter-TSS (NM_001348247)	promoter-TSS (NM_001348247)	-384	NM_001348247	9447		NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding
192927	chr6	27719051	27719300	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	25096	NR_038292	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
161894	chr3	45957971	45959050	+	0	NA	exon (NM_024513, exon 13 of 18)	exon (NM_024513, exon 13 of 18)	15046	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
92334	chr17	8155351	8157380	+	0	NA	Intergenic	CpG	-3961	NM_002616	5187		NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian regulator 1	protein-coding
93854	chr17	21002801	21003700	+	0	NA	intron (NM_015276, intron 12 of 12)	intron (NM_015276, intron 12 of 12)	39761	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
71914	chr15	22775651	22776310	+	0	NA	exon (NM_001365371, exon 1 of 13)	exon (NM_001365371, exon 1 of 13)	152	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
181612	chr5	43631121	43631580	+	0	NA	intron (NM_182977, intron 7 of 21)	intron (NM_182977, intron 7 of 21)	-28120	NR_073113	100652772		NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
150132	chr21	37642521	37642780	+	0	NA	intron (NM_002240, intron 3 of 3)	intron (NM_002240, intron 3 of 3)	222351	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
65183	chr14	49618601	49619250	+	0	NA	exon (NM_001001, exon 2 of 2)	exon (NM_001001, exon 2 of 2)	1701	NM_001001	6166		NM_001001	ENSG00000165502	RPL36AL	RPL36A|RPL36AP42|RPL36A_18_1363	ribosomal protein L36a like	protein-coding
175310	chr4	68310671	68310830	+	0	NA	3' UTR (NM_133370, exon 16 of 16)	3' UTR (NM_133370, exon 16 of 16)	39340	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
183034	chr5	73231271	73231630	+	0	NA	Intergenic	Intergenic	-29489	NR_134291	340090		NR_134291	ENSG00000287090	LOC340090	-	uncharacterized LOC340090	ncRNA
79276	chr16	530071	530230	+	0	NA	intron (NM_005632, intron 1 of 13)	intron (NM_005632, intron 1 of 13)	2438	NM_005632	6650		NM_005632	ENSG00000103326	CAPN15	OGIN|SOLH	calpain 15	protein-coding
4468	chr1	21356021	21356280	+	0	NA	Intergenic	Intergenic	-10646	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
103460	chr17	78318101	78318300	+	0	NA	Intergenic	Intergenic	-39708	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
64700	chr14	33990051	33990350	+	0	NA	Intergenic	Intergenic	-39126	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
119853	chr19	41425021	41426080	+	0	NA	TTS (NM_000709)	TTS (NM_000709)	2443	NM_001385648	374907		NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
118776	chr19	38387411	38389230	+	0	NA	promoter-TSS (NM_152657)	promoter-TSS (NM_152657)	-286	NM_152657	199720		NM_152657	ENSG00000179168	GGN	-	gametogenetin	protein-coding
153264	chr22	24135571	24135730	+	0	NA	intron (NM_012295, intron 29 of 36)	MIRc|SINE|MIR	-45837	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
27699	chr10	33142251	33142750	+	0	NA	Intergenic	Intergenic	-25693	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
10873	chr1	78007201	78007650	+	0	NA	intron (NM_001317103, intron 1 of 1)	AluSx1|SINE|Alu	2486	NM_007034	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
224172	chr9	5264271	5264430	+	0	NA	Intergenic	L1PB4|LINE|L1	32931	NM_002195	3641		NM_002195	ENSG00000120211	INSL4	EPIL|PLACENTIN	insulin like 4	protein-coding
99179	chr17	49450871	49451500	+	0	NA	Intergenic	Intergenic	10564	NR_110805	101927207		NR_110805	ENSG00000249497	LINC02075	-	long intergenic non-protein coding RNA 2075	ncRNA
76258	chr15	74050151	74050650	+	0	NA	Intergenic	Intergenic	32150	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
183301	chr5	76594801	76595000	+	0	NA	intron (NM_006633, intron 9 of 35)	AluSg4|SINE|Alu	14069	NR_134278	101929109		NR_134278	ENSG00000249713	LOC101929109	-	uncharacterized LOC101929109	ncRNA
174596	chr4	40257751	40258050	+	0	NA	Intergenic	Intergenic	-49285	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
195617	chr6	37700521	37701180	+	0	NA	Intergenic	MIR|SINE|MIR	-2967	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
129765	chr2	71045621	71046100	+	0	NA	Intergenic	SATR2|Satellite|Satellite	21785	NR_002185	79315		NR_002185	ENSG00000290930	OR7E91P	-	olfactory receptor family 7 subfamily E member 91 pseudogene	pseudo
9819	chr1	53919171	53919850	+	0	NA	intron (NM_001382261, intron 5 of 5)	MLT1H|LTR|ERVL-MaLR	25323	NM_213593	1733		NM_000792	ENSG00000211452	DIO1	5DI|THMA2|TXDI1	iodothyronine deiodinase 1	protein-coding
173058	chr4	6019671	6019830	+	0	NA	Intergenic	MER67C|LTR|ERV1	-1204	NM_001364690	389197		NM_207405	ENSG00000181215	C4orf50	-	chromosome 4 open reading frame 50	protein-coding
79083	chr16	173271	173430	+	0	NA	intron (NM_000517, intron 2 of 2)	CpG-8811	474	NM_000517	3040		NM_000517	ENSG00000188536	HBA2	ECYT7|HBA-T2|HBH	hemoglobin subunit alpha 2	protein-coding
145047	chr20	38419701	38419900	+	0	NA	TTS (NR_027241)	TTS (NR_027241)	5530	NR_002910	26776		NR_002910		SNORA71B	RNU71B|U71b	small nucleolar RNA, H/ACA box 71B	snoRNA
69287	chr14	93081901	93082800	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	14898	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
225216	chr9	34176321	34176850	+	0	NA	Intergenic	AluSp|SINE|Alu	-2420	NM_001171201	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
103791	chr17	79027171	79027330	+	0	NA	intron (NR_049769, intron 1 of 3)	intron (NR_049769, intron 1 of 3)	405	NR_040019	100507410		NR_040018		C1QTNF1-AS1	-	C1QTNF1 antisense RNA 1	ncRNA
40969	chr11	65362371	65362800	+	0	NA	Intergenic	L2a|LINE|L2	7834	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
179805	chr5	399321	399580	+	0	NA	intron (NR_165159, intron 6 of 13)	intron (NR_165159, intron 6 of 13)	43710	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
5601	chr1	26040921	26041430	+	0	NA	intron (NM_032513, intron 5 of 6)	intron (NM_032513, intron 5 of 6)	4943	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
193345	chr6	30212971	30215380	+	0	NA	promoter-TSS (NM_003449).3	promoter-TSS (NM_003449).3	-769	NM_001242783	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
65461	chr14	51775451	51775750	+	0	NA	Intergenic	Intergenic	58317	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
29301	chr10	69321351	69321730	+	0	NA	intron (NM_000188, intron 1 of 17)	intron (NM_000188, intron 1 of 17)	2693	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
61469	chr13	52298451	52298550	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-35795	NR_120400	103191607		NR_120400	ENSG00000271564	LINC02333	-	long intergenic non-protein coding RNA 2333	ncRNA
179152	chr4	169663451	169663950	+	0	NA	intron (NM_001243374, intron 1 of 11)	MIR|SINE|MIR	3638	NM_001243374	1182		NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3|NEDHYBA|NEDSBA	chloride voltage-gated channel 3	protein-coding
24364	chr1	241528651	241528750	+	0	NA	Intergenic	Intergenic	-3678	NM_003679	8564		NM_003679	ENSG00000117009	KMO	dJ317G22.1	kynurenine 3-monooxygenase	protein-coding
193870	chr6	31574221	31574480	+	0	NA	TTS (NM_000595).6	TTS (NM_000595).6	-1215	NM_000594	7124		NM_000594	ENSG00000232810	TNF	DIF|TNF-alpha|TNFA|TNFSF2|TNLG1F	tumor necrosis factor	protein-coding
171691	chr3	197779671	197780130	+	0	NA	intron (NR_027840, intron 8 of 8)	intron (NR_027840, intron 8 of 8)	-11326	NM_001363887	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
29972	chr10	73729671	73730850	+	0	NA	promoter-TSS (NR_048575)	promoter-TSS (NR_048575)	246	NR_160426	113939925		NR_160425	ENSG00000242288	BMS1P4-AGAP5	-	BMS1P4-AGAP5 readthrough	pseudo
8272	chr1	39899801	39900100	+	0	NA	3' UTR (NM_005376, exon 2 of 2)	3' UTR (NM_005376, exon 2 of 2)	1967	NM_001033082	4610		NM_005376	ENSG00000116990	MYCL	L-Myc|LMYC|MYCL1|bHLHe38	MYCL proto-oncogene, bHLH transcription factor	protein-coding
102024	chr17	74851921	74853100	+	0	NA	non-coding (NR_103735, exon 3 of 13)	non-coding (NR_103735, exon 3 of 13)	7374	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
91214	chr17	3922751	3923400	+	0	NA	TTS (NM_005173)	TTS (NM_005173)	-6610	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
65800	chr14	54730151	54730530	+	0	NA	intron (NM_001161576, intron 2 of 10)	intron (NM_001161576, intron 2 of 10)	-24493	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
154479	chr22	35628651	35628750	+	0	NA	Intergenic	Intergenic	-5346	NM_001382809	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
60246	chr13	40577301	40577500	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	89241	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
33025	chr10	110750521	110751280	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	106564	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
225767	chr9	37390851	37391180	+	0	NA	Intergenic	MIR3|SINE|MIR	-31681	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
180980	chr5	35790251	35790950	+	0	NA	intron (NM_024867, intron 30 of 36)	intron (NM_024867, intron 30 of 36)	-66291	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
211727	chr7	107042971	107043130	+	0	NA	Intergenic	Intergenic	-1655	NM_002736	5577		NM_002736	ENSG00000005249	PRKAR2B	PRKAR2|RII-BETA	protein kinase cAMP-dependent type II regulatory subunit beta	protein-coding
169864	chr3	177212101	177212580	+	0	NA	Intergenic	Intergenic	-14858	NM_001374330	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
14931	chr1	147580101	147580830	+	0	NA	intron (NM_004326, intron 1 of 9)	intron (NM_004326, intron 1 of 9)	38964	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
220439	chr8	100308631	100309400	+	0	NA	intron (NM_001280539, intron 2 of 10)	intron (NM_001280539, intron 2 of 10)	360	NM_001353838	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
168391	chr3	142028401	142028750	+	0	NA	promoter-TSS (NM_001178142)	promoter-TSS (NM_001178142)	51	NM_001375756	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
166889	chr3	124564671	124565230	+	0	NA	intron (NM_001024660, intron 34 of 59)	intron (NM_001024660, intron 34 of 59)	-19708	NM_001322993	8997		NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|KALNC2|TRAD	kalirin RhoGEF kinase	protein-coding
23481	chr1	228628671	228629200	+	0	NA	promoter-TSS (NR_023371)	promoter-TSS (NR_023371)	-669	NR_023371	100169760		NR_023371	ENSG00000201321	RNA5S9	RN5S9	RNA, 5S ribosomal 9	rRNA
234918	chrX	37572171	37572700	+	0	NA	exon (NM_001170331, exon 1 of 5)	exon (NM_001170331, exon 1 of 5)	774	NM_198511	347404		NM_198511	ENSG00000147036	LANCL3	-	LanC like family member 3	protein-coding
39206	chr11	57514051	57515200	+	0	NA	intron (NM_003627, intron 1 of 14)	CpG	284	NM_001198810	8501		NM_003627	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	solute carrier family 43 member 1	protein-coding
182154	chr5	56502121	56502380	+	0	NA	Intergenic	Intergenic	-20481	NR_104664	102467147		NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
96958	chr17	42193851	42195000	+	0	NA	promoter-TSS (NM_001142623)	promoter-TSS (NM_001142623)	69	NM_001142623	84514		NM_032484	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
64828	chr14	35115501	35115700	+	0	NA	intron (NM_001305155, intron 1 of 11)	intron (NM_001305155, intron 1 of 11)	6942	NM_001305155	55012		NM_017917	ENSG00000092020	PPP2R3C	C14orf10|G4-1|G5pr|GDRM|MEGD|SPGF36	protein phosphatase 2 regulatory subunit B''gamma	protein-coding
238058	chrX	135536621	135537300	+	0	NA	intron (NM_001351601, intron 2 of 17)	intron (NM_001351601, intron 2 of 17)	-16286	NR_046740	100874118		NR_046740	ENSG00000225235	INTS6L-AS1	DDX26B-AS1	INTS6L antisense RNA 1	ncRNA
15566	chr1	150556601	150556800	+	0	NA	exon (NM_025008, exon 10 of 15)	exon (NM_025008, exon 10 of 15)	4771	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
134070	chr2	131511621	131512600	+	0	NA	intron (NR_026922, intron 10 of 17)	intron (NR_026922, intron 10 of 17)	-15565	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
237124	chrX	106484001	106484650	+	0	NA	Intergenic	Intergenic	-127605	NM_001184782	55086		NM_018015	ENSG00000147231	RADX	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein-coding
54234	chr12	80937301	80937560	+	0	NA	intron (NR_136888, intron 1 of 6)	CpG	277	NM_001324423	8825		NM_004664	ENSG00000111052	LIN7A	LIN-7A|LIN7|MALS-1|MALS1|TIP-33|VELI1	lin-7 homolog A, crumbs cell polarity complex component	protein-coding
204523	chr7	4799671	4800330	+	0	NA	intron (NM_018059, intron 13 of 14)	intron (NM_018059, intron 13 of 14)	-11361	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
99976	chr17	57599971	57600630	+	0	NA	TTS (NR_110807)	TTS (NR_110807)	8112	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
213538	chr7	139090801	139091780	+	0	NA	intron (NM_020119, intron 1 of 12)	AluY|SINE|Alu	18430	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
136931	chr2	190023951	190024200	+	0	NA	Intergenic	Intergenic	38654	NM_005259	2660		NM_005259	ENSG00000138379	MSTN	GDF8|MSLHP	myostatin	protein-coding
120108	chr19	42175801	42176200	+	0	NA	Intergenic	Intergenic	41677	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
174290	chr4	38385621	38385880	+	0	NA	TTS (NR_149123)	TTS (NR_149123)	18836	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
202343	chr6	157557451	157557950	+	0	NA	intron (NM_024630, intron 2 of 8)	intron (NM_024630, intron 2 of 8)	28568	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
164168	chr3	56785651	56786780	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-10498	NM_001377413	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
121795	chr19	47905371	47905730	+	0	NA	Intergenic	L1PB1|LINE|L1	-2128	NR_004437	100126800		NR_004437		SNAR-A12	SNAR-A53102747	small NF90 (ILF3) associated RNA A12	snRNA
38127	chr11	35247321	35248600	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	85010	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
54452	chr12	91874371	91874730	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	267163	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
16333	chr1	154264071	154264680	+	0	NA	TTS (NM_001375631)	TTS (NM_001375631)	4648	NR_145714	109617023		NR_145714	ENSG00000201129	SNORA58B	-	small nucleolar RNA, H/ACA box 58B	snoRNA
64121	chr14	22837051	22838150	+	0	NA	intron (NM_004995, intron 1 of 9)	CpG	1015	NM_004995	4323		NM_004995	ENSG00000157227	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14	protein-coding
89813	chr16	89560121	89562030	+	0	NA	promoter-TSS (NR_002450)	promoter-TSS (NR_002450)	-355	NR_002450	606500		NR_002450		SNORD68	HBII-202	small nucleolar RNA, C/D box 68	snoRNA
218629	chr8	56209101	56209530	+	0	NA	intron (NM_002655, intron 1 of 4)	intron (NM_002655, intron 1 of 4)	1958	NM_001114635	5324		NM_002655	ENSG00000181690	PLAG1	PSA|SGPA|SRS4|ZNF912	PLAG1 zinc finger	protein-coding
225510	chr9	35696251	35697150	+	0	NA	TTS (NM_006289)	TTS (NM_006289)	-6644	NM_001301227	7169		NM_003289	ENSG00000198467	TPM2	AMCD1|CMYP23|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB	tropomyosin 2	protein-coding
87750	chr16	75238471	75238630	+	0	NA	5' UTR (NM_001170721, exon 1 of 6)	5' UTR (NM_001170721, exon 1 of 6)	110	NM_001170721	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
172138	chr4	1193751	1194200	+	0	NA	intron (NM_001199021, intron 1 of 7)	intron (NM_001199021, intron 1 of 7)	14987	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
58804	chr12	132787671	132788200	+	0	NA	intron (NM_005895, intron 13 of 23)	intron (NM_005895, intron 13 of 23)	-26103	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
224396	chr9	14313851	14314430	+	0	NA	promoter-TSS (NM_001369461)	promoter-TSS (NM_001369461)	1	NM_001369464	4781		NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
147328	chr20	58135371	58135530	+	0	NA	Intergenic	Intergenic	-15452	NM_178456	128602		NM_178456	ENSG00000124237	CIMIP1	C20orf85|LLC1|bA196N14.1	ciliary microtubule inner protein 1	protein-coding
40166	chr11	62885801	62886000	+	0	NA	intron (NM_001012662, intron 10 of 11)	(CATT)n|Simple_repeat|Simple_repeat	4201	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
85642	chr16	55792851	55793580	+	0	NA	Intergenic	Intergenic	32616	NR_003276	51716		NM_016280	ENSG00000291109	CES1P1	CES1A2|CES1A3|CES4|CESR|PCE-3	carboxylesterase 1 pseudogene 1	pseudo
132229	chr2	102304851	102305200	+	0	NA	Intergenic	Intergenic	-6477	NM_001282408	9173		NM_003856	ENSG00000115602	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor like 1	protein-coding
184832	chr5	111320921	111321380	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	96766	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
202227	chr6	156811401	156811600	+	0	NA	intron (NM_001371656, intron 2 of 20)	MLT1B|LTR|ERVL-MaLR	-31769	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
200045	chr6	129749621	129750830	+	0	NA	Intergenic	Intergenic	-40048	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
10031	chr1	56908851	56909150	+	0	NA	intron (NM_000562, intron 9 of 10)	MER20|DNA|hAT-Charlie	54203	NM_000562	731		NM_000562	ENSG00000157131	C8A	-	complement C8 alpha chain	protein-coding
107997	chr18	58685821	58686080	+	0	NA	intron (NM_173844, intron 2 of 15)	intron (NM_173844, intron 2 of 15)	-14077	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
229203	chr9	114737171	114737800	+	0	NA	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	55045	NM_001204344	9966		NM_005118	ENSG00000181634	TNFSF15	TL1|TL1A|TNLG1B|VEGI|VEGI192A	TNF superfamily member 15	protein-coding
237999	chrX	134795971	134796200	+	0	NA	promoter-TSS (NM_001365744)	promoter-TSS (NM_001365744)	270	NM_001331094	159090		NM_145284	ENSG00000156504	PABIR2	FAM122B|SPACIA2	PABIR family member 2	protein-coding
51945	chr12	53742501	53742730	+	0	NA	Intergenic	MIR3|SINE|MIR	9220	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
5705	chr1	26377051	26377500	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4481	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
98890	chr17	48577821	48579250	+	0	NA	promoter-TSS (NM_024015)	promoter-TSS (NM_024015)	-185	NM_024015	3214		NM_024015	ENSG00000182742	HOXB4	HOX-2.6|HOX2|HOX2F	homeobox B4	protein-coding
118743	chr19	38317001	38317750	+	0	NA	Intergenic	Intergenic	-1428	NM_001039673	90522		NM_033557	ENSG00000167645	YIF1B	FinGER8|KABAMAS	Yip1 interacting factor homolog B, membrane trafficking protein	protein-coding
228191	chr9	97694201	97694600	+	0	NA	intron (NR_149091, intron 1 of 3)	L1ME3|LINE|L1	2940	NM_000380	7507		NM_000380	ENSG00000136936	XPA	XP1|XPAC	XPA, DNA damage recognition and repair factor	protein-coding
202192	chr6	156378971	156379230	+	0	NA	TTS (NR_145751)	TTS (NR_145751)	350	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
24928	chr10	1114171	1114530	+	0	NA	intron (NM_014023, intron 11 of 13)	Tigger1|DNA|TcMar-Tigger	-45418	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
164196	chr3	56855871	56856230	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-54101	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
98865	chr17	48505571	48507130	+	0	NA	Intergenic	Intergenic	24661	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
77218	chr15	80999051	80999250	+	0	NA	Intergenic	AluY|SINE|Alu	-1677	NR_039739	100616181		NR_039739	ENSG00000265855	MIR4514	-	microRNA 4514	ncRNA
91722	chr17	6646071	6646230	+	0	NA	intron (NM_016060, intron 3 of 3)	L1MC4|LINE|L1	5090	NM_032731	84817		NM_032731	ENSG00000129235	TXNDC17	TRP14|TXNL5	thioredoxin domain containing 17	protein-coding
125534	chr2	13006771	13007230	+	0	NA	promoter-TSS (NR_038434)	promoter-TSS (NR_038434)	13	NR_038434	100506474		NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
37428	chr11	17352941	17353750	+	0	NA	intron (NM_001202439, intron 1 of 4)	intron (NM_001202439, intron 1 of 4)	1545	NM_001202439	374383		NM_001009913	ENSG00000188211	NCR3LG1	B7-H6|B7H6|DKFZp686O24166	natural killer cell cytotoxicity receptor 3 ligand 1	protein-coding
196535	chr6	43992401	43992600	+	0	NA	Intergenic	(GTG)n|Simple_repeat|Simple_repeat	-8085	NR_160955	221416		NM_153246	ENSG00000181577	LINC03040	C6orf223	long intergenic non-protein coding RNA 3040	ncRNA
141157	chr2	239256471	239256630	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-48912	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
224368	chr9	7784451	7784750	+	0	NA	Intergenic	MER57E1|LTR|ERV1	15178	NM_033428	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
11050	chr1	84999951	85000500	+	0	NA	Intergenic	Intergenic	-3112	NM_153259	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
202049	chr6	153966171	153966330	+	0	NA	Intergenic	Intergenic	-44246	NM_001145279	4988		NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor mu 1	protein-coding
22313	chr1	213712101	213712380	+	0	NA	Intergenic	L1PA7|LINE|L1	-212509	NR_046189	100861504		NR_046189		LINC00538	PROX1UT|Yiya	long intergenic non-protein coding RNA 538	ncRNA
132047	chr2	101011201	101011600	+	0	NA	intron (NM_001330348, intron 18 of 19)	intron (NM_001330348, intron 18 of 19)	9111	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
130225	chr2	84782991	84783650	+	0	NA	intron (NM_001370, intron 65 of 76)	MIR3|SINE|MIR	97764	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
177272	chr4	109443651	109444150	+	0	NA	intron (NM_001318085, intron 1 of 23)	intron (NM_001318085, intron 1 of 23)	-10083	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
57223	chr12	121526601	121527150	+	0	NA	intron (NM_001005366, intron 8 of 22)	AluSq2|SINE|Alu	53371	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
70320	chr14	101830771	101831450	+	0	NA	intron (NM_001161725, intron 3 of 15)	intron (NM_001161725, intron 3 of 15)	21247	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
25900	chr10	11282051	11282780	+	0	NA	intron (NM_001326330, intron 8 of 12)	MIR|SINE|MIR	62259	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
145841	chr20	45855121	45855930	+	0	NA	intron (NM_005469, intron 1 of 5)	AluSz|SINE|Alu	1867	NM_005469	10005		NM_005469	ENSG00000101473	ACOT8	HNAACTE|NAP1|PTE-1|PTE-2|PTE1|PTE2|hACTE-III|hTE	acyl-CoA thioesterase 8	protein-coding
86066	chr16	57599771	57599930	+	0	NA	Intergenic	MIR3|SINE|MIR	-19888	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
56426	chr12	113334521	113336430	+	0	NA	promoter-TSS (NM_024959)	promoter-TSS (NM_024959)	-307	NM_024959	80024		NM_024959	ENSG00000089060	SLC8B1	NCKX6|NCLX|SLC24A6	solute carrier family 8 member B1	protein-coding
118644	chr19	37298271	37298430	+	0	NA	Intergenic	CpG	-14487	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
82495	chr16	17369501	17371330	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	100545	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
16654	chr1	155166651	155168300	+	0	NA	Intergenic	Intergenic	5829	NM_173852	200185		NM_173852	ENSG00000163463	KRTCAP2	KCP2	keratinocyte associated protein 2	protein-coding
112826	chr19	7521971	7523500	+	0	NA	5' UTR (NM_020533, exon 1 of 14)	5' UTR (NM_020533, exon 1 of 14)	111	NM_020533	57192		NM_020533	ENSG00000090674	MCOLN1	LECD|MG-2|ML1|ML4|MLIV|MST080|MSTP080|TRP-ML1|TRPM-L1|TRPML1	mucolipin TRP cation channel 1	protein-coding
137092	chr2	190943171	190943730	+	0	NA	intron (NM_014905, intron 14 of 17)	L2a|LINE|L2	62629	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
82801	chr16	21466671	21467550	+	0	NA	non-coding (NR_027155, exon 11 of 29)	non-coding (NR_027155, exon 11 of 29)	-32655	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
49582	chr12	27012771	27013130	+	0	NA	intron (NM_016551, intron 1 of 11)	AluSg|SINE|Alu	1434	NM_016551	51768		NM_016551	ENSG00000064115	TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
232244	chr9	134390171	134391100	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	11224	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
38099	chr11	35214771	35215280	+	0	NA	intron (NM_001202557, intron 6 of 8)	MER5A|DNA|hAT-Charlie	52075	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
49318	chr12	21645101	21645500	+	0	NA	intron (NM_001174097, intron 3 of 7)	LTR5_Hs|LTR|ERVK	12494	NM_001174097	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
20028	chr1	185311171	185311330	+	0	NA	5' UTR (NM_006469, exon 2 of 15)	5' UTR (NM_006469, exon 2 of 15)	5993	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
206757	chr7	36690721	36691300	+	0	NA	intron (NM_001177506, intron 1 of 21)	intron (NM_001177506, intron 1 of 21)	33484	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
21726	chr1	206785551	206785650	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-13106	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
136759	chr2	181326671	181326830	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	-21098	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
3907	chr1	17212451	17213350	+	0	NA	intron (NM_013358, intron 1 of 15).2	intron (NM_013358, intron 1 of 15).2	7772	NM_013358	29943		NM_013358	ENSG00000142623	PADI1	HPAD10|PAD1|PDI|PDI1	peptidyl arginine deiminase 1	protein-coding
128941	chr2	64561971	64562450	+	0	NA	intron (NM_001375973, intron 2 of 6)	intron (NM_001375973, intron 2 of 6)	36697	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
216348	chr8	17001051	17002050	+	0	NA	intron (NM_019851, intron 1 of 2)	CpG	795	NM_019851	26281		NM_019851	ENSG00000078579	FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
117478	chr19	19774501	19775000	+	0	NA	intron (NR_026956, intron 1 of 2)	intron (NR_026956, intron 1 of 2)	1663	NR_026956	284440		NM_182576		LINC00663	-	long intergenic non-protein coding RNA 663	ncRNA
102942	chr17	76671121	76672400	+	0	NA	promoter-TSS (NR_130916)	promoter-TSS (NR_130916)	-168	NR_130916	105274304		NR_130916	ENSG00000261335	LOC105274304	-	uncharacterized LOC105274304	ncRNA
744	chr1	1486021	1487300	+	0	NA	exon (NM_001317238, exon 9 of 14)	exon (NM_001317238, exon 9 of 14)	8811	NM_001317238	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
69872	chr14	99284821	99285280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12853	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
155375	chr22	38299621	38299880	+	0	NA	intron (NM_152221, intron 6 of 10)	AluSg4|SINE|Alu	17683	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
82460	chr16	16861571	16861750	+	0	NA	Intergenic	Intergenic	-272844	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
175169	chr4	55866871	55867310	+	0	NA	intron (NM_018261, intron 4 of 18)	intron (NM_018261, intron 4 of 18)	13440	NM_178237	55763		NM_018261	ENSG00000090989	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
137149	chr2	191064421	191065300	+	0	NA	exon (NM_001243835, exon 8 of 24)	exon (NM_001243835, exon 8 of 24)	43334	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
52020	chr12	53987121	53987600	+	0	NA	intron (NM_017409, intron 1 of 1)	intron (NM_017409, intron 1 of 1)	-1841	NR_047506	100874365		NR_047506	ENSG00000251151	HOXC-AS3	-	HOXC cluster antisense RNA 3	ncRNA
207147	chr7	43455071	43455230	+	0	NA	intron (NM_015052, intron 12 of 29)	(TTTTG)n|Simple_repeat|Simple_repeat	67392	NR_038276	100506895		NR_038276	ENSG00000231638	LUARIS	SCAT6|lncRNA32	lncRNA upregulator of antiviral response interferon signaling	ncRNA
222435	chr8	134831451	134833380	+	0	NA	Intergenic	CpG	-5654	NR_126028	552853		NR_126028	ENSG00000253433	NCRNA00250	C8orf24	non-protein coding RNA 250	ncRNA
155840	chr22	39436921	39438130	+	0	NA	TTS (NR_040535)	TTS (NR_040535)	5365	NR_040535	100506472		NR_040535		LOC100506472	-	uncharacterized LOC100506472	ncRNA
210453	chr7	100121521	100121780	+	0	NA	intron (NM_152755, intron 1 of 5)	AluSz|SINE|Alu	-1792	NM_001190415	6878		NM_005641	ENSG00000106290	TAF6	ALYUS|MGC:8964|TAF(II)70|TAF(II)80|TAF2E|TAFII-70|TAFII-80|TAFII70|TAFII80|TAFII85	TATA-box binding protein associated factor 6	protein-coding
82108	chr16	14629051	14630730	+	0	NA	intron (NM_001134477, intron 1 of 23).2	CpG	370	NM_001134477	5073		NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding
44354	chr11	102447071	102448050	+	0	NA	intron (NM_052932, intron 2 of 4)	intron (NM_052932, intron 2 of 4)	5205	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
93590	chr17	19126271	19126430	+	0	NA	Intergenic	L1MC4|LINE|L1	-1239	NM_001353418	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
3281	chr1	15251501	15251700	+	0	NA	intron (NM_052929, intron 1 of 30)	intron (NM_052929, intron 1 of 30)	4375	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
212874	chr7	130869871	130870030	+	0	NA	Intergenic	L1MB8|LINE|L1	6860	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
145223	chr20	38914621	38915030	+	0	NA	intron (NM_001172735, intron 9 of 9)	AluJo|SINE|Alu	-11592	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
115862	chr19	16555301	16555500	+	0	NA	intron (NM_024881, intron 4 of 5)	intron (NM_024881, intron 4 of 5)	-12963	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
173358	chr4	7850501	7850900	+	0	NA	intron (NM_001371091, intron 5 of 17)	MLT2F|LTR|ERVL	21608	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
145347	chr20	41142201	41142500	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-4350	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
39188	chr11	57463501	57464250	+	0	NA	intron (NM_178570, intron 1 of 2)	intron (NM_178570, intron 1 of 2)	3347	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
62012	chr13	84062971	84063130	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-77552	NR_046871	100874128		NR_046871		LINC00333	NCRNA00333	long intergenic non-protein coding RNA 333	ncRNA
234692	chrX	20399821	20400080	+	0	NA	Intergenic	LTR89|LTR|ERVL?	-133041	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
121822	chr19	47947651	47947950	+	0	NA	Intergenic	L1P4|LINE|L1	-2496	NR_024221	100170226		NR_024221		SNAR-C3	-	small NF90 (ILF3) associated RNA C3	snRNA
16215	chr1	153891221	153891930	+	0	NA	intron (NM_020699, intron 1 of 10)	AluSq|SINE|Alu	31397	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
193521	chr6	30587071	30587300	+	0	NA	intron (NM_001090, intron 19 of 23).3	AluSx|SINE|Alu	2853	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
89449	chr16	88999571	89000280	+	0	NA	Intergenic	Intergenic	-22718	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
93565	chr17	19090021	19090650	+	0	NA	intron (NR_164158, intron 1 of 3)	intron (NR_164158, intron 1 of 3)	874	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
56648	chr12	119649271	119649500	+	0	NA	Intergenic	Intergenic	-18748	NM_006253	5564		NM_006253	ENSG00000111725	PRKAB1	AMPK|HAMPKb	protein kinase AMP-activated non-catalytic subunit beta 1	protein-coding
47624	chr12	6142001	6142200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-17430	NM_000552	7450		NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
183001	chr5	72307621	72309280	+	0	NA	intron (NM_001286751, intron 2 of 10)	CpG	11790	NM_001286751	23107		NM_015084	ENSG00000113048	MRPS27	MRP-S27|S27mt|mS27	mitochondrial ribosomal protein S27	protein-coding
129833	chr2	72823471	72823630	+	0	NA	intron (NR_135773, intron 1 of 21)	AluJb|SINE|Alu	2483	NM_001321730	23233		NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2|SEMDJL3	exocyst complex component 6B	protein-coding
64730	chr14	34518321	34518780	+	0	NA	intron (NM_001318916, intron 4 of 4)	AluSg|SINE|Alu	21151	NM_018453	55837		NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding
27587	chr10	32381051	32381350	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-2431	NR_168506	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
90152	chr17	143501	144380	+	0	NA	3' UTR (NM_003585, exon 9 of 9).2	3' UTR (NM_003585, exon 9 of 9).2	6371	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
175010	chr4	52051251	52051950	+	0	NA	non-coding (NR_123728, exon 1 of 13)	non-coding (NR_123728, exon 1 of 13)	296	NM_001346103	132671		NM_145263	ENSG00000163071	SPATA18	Mieap|SPETEX1	spermatogenesis associated 18	protein-coding
183334	chr5	76732501	76733530	+	0	NA	exon (NM_001992, exon 2 of 2)	exon (NM_001992, exon 2 of 2)	16889	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
39881	chr11	62488271	62488830	+	0	NA	intron (NM_024060, intron 5 of 5)	AluSq2|SINE|Alu	57114	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
156643	chr22	41625771	41626000	+	0	NA	intron (NM_001288978, intron 2 of 11)	AluSc|SINE|Alu	4590	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
196902	chr6	52333051	52333150	+	0	NA	Intergenic	AluJo|SINE|Alu	-29051	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
92304	chr17	8118021	8119300	+	0	NA	promoter-TSS (NM_001369446)	promoter-TSS (NM_001369446)	-146	NM_021628	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
139256	chr2	219433971	219434350	+	0	NA	promoter-TSS (NM_005876)	promoter-TSS (NM_005876)	-683	NM_005876	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
142682	chr20	6122801	6123280	+	0	NA	promoter-TSS (NM_017671)	promoter-TSS (NM_017671)	-10	NM_017671	55612		NM_017671	ENSG00000101311	FERMT1	C20orf42|DTGCU2|KIND1|UNC112A|URP1	FERM domain containing kindlin 1	protein-coding
55487	chr12	104734771	104735130	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	143317	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
154446	chr22	35390901	35391300	+	0	NA	intron (NM_002133, intron 4 of 4)	intron (NM_002133, intron 4 of 4)	-9040	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
2128	chr1	8316421	8316680	+	0	NA	Intergenic	Intergenic	-1564	NM_001379614	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
37646	chr11	22633551	22633950	+	0	NA	Intergenic	L1PBb|LINE|L1	-7927	NM_022725	2188		NM_022725	ENSG00000183161	FANCF	FAF	FA complementation group F	protein-coding
33360	chr10	117187371	117187530	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-10039	NM_181840	338567		NM_181840	ENSG00000186795	KCNK18	K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK	potassium two pore domain channel subfamily K member 18	protein-coding
163455	chr3	50607601	50608400	+	0	NA	exon (NM_013324, exon 4 of 4)	exon (NM_013324, exon 4 of 4)	3774	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
156744	chr22	41826001	41826330	+	0	NA	3' UTR (NM_001304797, exon 4 of 4)	3' UTR (NM_001304797, exon 4 of 4)	-6940	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
189968	chr5	177439421	177439680	+	0	NA	intron (NR_038916, intron 2 of 2)	AluSq2|SINE|Alu	-6445	NM_001375593	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
196652	chr6	44303901	44304200	+	0	NA	intron (NM_020745, intron 14 of 21)	MIR3|SINE|MIR	-6352	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
18986	chr1	169309271	169309730	+	0	NA	intron (NR_104229, intron 4 of 12)	LTR73|LTR|ERV1	58297	NM_013330	29922		NM_013330	ENSG00000143156	NME7	CFAP67|MN23H7|NDK 7|NDK7|nm23-H7	NME/NM23 family member 7	protein-coding
158028	chr22	49921371	49922100	+	0	NA	exon (NM_024324, exon 5 of 10)	exon (NM_024324, exon 5 of 10)	3101	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
110320	chr19	1855011	1856400	+	0	NA	intron (NM_031918, intron 1 of 1)	intron (NM_031918, intron 1 of 1)	-7222	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
167090	chr3	127545801	127546150	+	0	NA	Intergenic	Intergenic	-8195	NR_125397	101927149		NR_125397	ENSG00000239921	LINC01471	-	long intergenic non-protein coding RNA 1471	ncRNA
3612	chr1	16361801	16362430	+	0	NA	Intergenic	AluSx4|SINE|Alu	-5127	NR_073501	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
157154	chr22	42863171	42863850	+	0	NA	Intergenic	L1ME1|LINE|L1	-6237	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
183280	chr5	76505071	76505430	+	0	NA	intron (NM_006633, intron 2 of 35)	(ATGA)n|Simple_repeat|Simple_repeat	-42159	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
39723	chr11	61775201	61775920	+	0	NA	intron (NM_013279, intron 8 of 25)	intron (NM_013279, intron 8 of 25)	17001	NR_030342	693196		NR_030342	ENSG00000284108	MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
33395	chr10	117838421	117838880	+	0	NA	Intergenic	L1PA2|LINE|L1	-208171	NR_026939	255082		NM_178816	ENSG00000177640	CASC2	C10orf5	cancer susceptibility 2	ncRNA
20156	chr1	192610101	192610330	+	0	NA	Intergenic	Intergenic	-25932	NM_144766	6003		NM_002927	ENSG00000127074	RGS13	-	regulator of G protein signaling 13	protein-coding
36708	chr11	8960771	8960930	+	0	NA	intron (NM_001286094, intron 1 of 3)	AluSx1|SINE|Alu	3592	NM_020644	56674		NM_020644	ENSG00000175348	TMEM9B	C11orf15	TMEM9 domain family member B	protein-coding
82073	chr16	14101501	14101700	+	0	NA	intron (NM_001365418, intron 3 of 5)	intron (NM_001365418, intron 3 of 5)	30281	NM_001365421	57496		NM_014048	ENSG00000186260	MRTFB	MKL2|MRTF-B|NPD001	myocardin related transcription factor B	protein-coding
237670	chrX	124341371	124341830	+	0	NA	Intergenic	Intergenic	-4682	NM_001114937	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
175237	chr4	56978601	56980200	+	0	NA	intron (NM_001303268, intron 1 of 23)	intron (NM_001303268, intron 1 of 23)	504	NM_000938	5431		NM_000938	ENSG00000047315	POLR2B	POL2RB|RPB2|hRPB140	RNA polymerase II subunit B	protein-coding
125086	chr2	9702751	9704430	+	0	NA	Intergenic	Intergenic	-72593	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
70090	chr14	100176501	100176700	+	0	NA	Intergenic	L1MA3|LINE|L1	-16955	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
137176	chr2	191125051	191125150	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	25894	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
176781	chr4	102501921	102502750	+	0	NA	intron (NM_001382625, intron 1 of 24)	(CT)n|Simple_repeat|Simple_repeat	151	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
186544	chr5	138451151	138451550	+	0	NA	Intergenic	Intergenic	12293	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
168897	chr3	152321821	152322080	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	19040	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
38329	chr11	44305621	44306680	+	0	NA	intron (NM_021926, intron 1 of 3)	CpG	3989	NM_021926	60529		NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
205128	chr7	7057351	7057650	+	0	NA	Intergenic	SATR1|Satellite|Satellite	9545	NR_037454	100500886		NR_037454	ENSG00000266287	MIR3683	-	microRNA 3683	ncRNA
7903	chr1	37434321	37434730	+	0	NA	Intergenic	Intergenic	39918	NR_038842	728431		NR_038842	ENSG00000233621	LITATS1	LINC01137|ZC3H12A-DT	lncRNA induced by TGF-beta and antagonizes TGF-beta signaling 1	ncRNA
123775	chr19	55109001	55109400	+	0	NA	intron (NM_017607, intron 3 of 21)	AluJb|SINE|Alu	8437	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
73144	chr15	41393121	41393380	+	0	NA	intron (NM_016013, intron 3 of 4)	AluSx|SINE|Alu	9246	NR_045620	51103		NM_016013	ENSG00000137806	NDUFAF1	CGI-65|CGI65|CIA30|MC1DN11	NADH:ubiquinone oxidoreductase complex assembly factor 1	protein-coding
52365	chr12	55653071	55653450	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	16368	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
144748	chr20	36597701	36597900	+	0	NA	intron (NM_001199535, intron 2 of 4)	intron (NM_001199535, intron 2 of 4)	-7979	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
110577	chr19	2154121	2154380	+	0	NA	Intergenic	Intergenic	-2684	NM_001261826	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
165563	chr3	101517471	101517630	+	0	NA	Intergenic	MER34A1|LTR|ERV1	-1317	NR_036433	131909		NR_036433		ARB2BP	FAM172B|FAM172BP	ARB2 family member B, pseudogene	pseudo
70065	chr14	100143651	100144050	+	0	NA	TTS (NM_206918)	TTS (NM_206918)	15795	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
203888	chr7	1483151	1483730	+	0	NA	intron (NM_001080453, intron 26 of 47)	intron (NM_001080453, intron 26 of 47)	20949	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
189996	chr5	177465921	177466300	+	0	NA	intron (NM_004395, intron 8 of 13)	intron (NM_004395, intron 8 of 13)	-3684	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
20398	chr1	198178201	198178600	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	21402	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
82286	chr16	15542701	15543100	+	0	NA	intron (NM_001142469, intron 2 of 5).2	LTR1F2|LTR|ERV1	40634	NM_001142469	89927		NM_033201	ENSG00000166780	BMERB1	C16orf45|MINP	bMERB domain containing 1	protein-coding
198708	chr6	108157821	108158680	+	0	NA	non-coding (NR_145458, exon 2 of 2)	non-coding (NR_145458, exon 2 of 2)	-7772	NM_003269	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
44633	chr11	109946221	109946580	+	0	NA	Intergenic	Intergenic	-146992	NM_033390	85463		NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
87270	chr16	69996971	69997130	+	0	NA	intron (NR_003610, intron 16 of 25)	intron (NR_003610, intron 16 of 25)	-33296	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
195783	chr6	40586201	40586600	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	964	NM_020737	57497		NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
159274	chr3	12961271	12961630	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	6280	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
52390	chr12	55726251	55726350	+	0	NA	intron (NM_001257390, intron 5 of 7)	intron (NM_001257390, intron 5 of 7)	1488	NM_001257401	967		NM_001780	ENSG00000135404	CD63	AD1|HOP-26|ME491|MLA1|OMA81H|Pltgp40|TSPAN30	CD63 molecule	protein-coding
6513	chr1	28521421	28521680	+	0	NA	intron (NM_001048195, intron 1 of 10)	intron (NM_001048195, intron 1 of 10)	3324	NM_001048194	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
109470	chr19	803821	804730	+	0	NA	promoter-TSS (NR_039900)	promoter-TSS (NR_039900)	-665	NR_039900	100616459		NR_039900	ENSG00000284361	MIR4745	mir-4745	microRNA 4745	ncRNA
22235	chr1	212604201	212605100	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	-4111	NM_001674	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
202076	chr6	154247011	154248280	+	0	NA	TTS (NM_001008503)	TTS (NM_001008503)	82436	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
150471	chr21	42590871	42591230	+	0	NA	Intergenic	Intergenic	24045	NR_131192	101928233		NR_131192	ENSG00000225431	LINC01671	-	long intergenic non-protein coding RNA 1671	ncRNA
74990	chr15	63920321	63920580	+	0	NA	3' UTR (NM_001363730, exon 10 of 10)	3' UTR (NM_001363730, exon 10 of 10)	-7824	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
126418	chr2	27715451	27716650	+	0	NA	promoter-TSS (NR_135200)	promoter-TSS (NR_135200)	-73	NR_160725	105374378		NR_160725		LOC105374378	-	uncharacterized LOC105374378	ncRNA
224431	chr9	15298451	15298550	+	0	NA	intron (NM_152574, intron 1 of 19)	THE1B|LTR|ERVL-MaLR	8860	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
36342	chr11	3902351	3902950	+	0	NA	intron (NM_001382571, intron 1 of 9)	MER1B|DNA|hAT-Charlie	46588	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
189640	chr5	176063101	176063530	+	0	NA	promoter-TSS (NM_001265615)	promoter-TSS (NM_001265615)	260	NR_169299	202134		NM_001079529		FAM153B	-	protein FAM153B	pseudo
197394	chr6	73504071	73505300	+	0	NA	3' UTR (NM_001123226, exon 13 of 13)	3' UTR (NM_001123226, exon 13 of 13)	13753	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
96241	chr17	39813001	39814630	+	0	NA	intron (NM_001257408, intron 2 of 6)	intron (NM_001257408, intron 2 of 6)	-35590	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
21203	chr1	204064821	204065600	+	0	NA	Intergenic	Intergenic	-7905	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
5469	chr1	25642271	25643500	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	26094	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
126685	chr2	30138301	30138500	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-8607	NM_001127401	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
168436	chr3	142578151	142579680	+	0	NA	promoter-TSS (NM_001354579)	promoter-TSS (NM_001354579)	-182	NM_001184	545		NM_001184	ENSG00000175054	ATR	FCTCS|FRP1|MEC1|SCKL|SCKL1	ATR serine/threonine kinase	protein-coding
195684	chr6	38496101	38496500	+	0	NA	intron (NM_001172418, intron 5 of 10)	intron (NM_001172418, intron 5 of 10)	14704	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
91655	chr17	5511571	5512130	+	0	NA	intron (NM_001033053, intron 15 of 15)	(TTTCTT)n|Simple_repeat|Simple_repeat	-10844	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
119859	chr19	41431301	41431850	+	0	NA	non-coding (NR_135476, exon 5 of 5)	non-coding (NR_135476, exon 5 of 5)	-2845	NM_198540	374907		NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
1592	chr1	3617871	3618230	+	0	NA	Intergenic	Intergenic	-6542	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
74965	chr15	63828171	63828530	+	0	NA	intron (NM_003922, intron 1 of 77)	AluSp|SINE|Alu	5598	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
133925	chr2	130375751	130376050	+	0	NA	TTS (NM_001142370)	TTS (NM_001142370)	19844	NM_014369	26469		NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase non-receptor type 18	protein-coding
164072	chr3	53893171	53893400	+	0	NA	Intergenic	L2b|LINE|L2	-1426	NM_021237	58515		NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
57706	chr12	122862301	122862880	+	0	NA	3' UTR (NM_003959, exon 32 of 32)	3' UTR (NM_003959, exon 32 of 32)	27133	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
53504	chr12	66409171	66409750	+	0	NA	intron (NM_001379345, intron 15 of 24)	L1MA2|LINE|L1	106915	NR_135080	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
173671	chr4	14920121	14921250	+	0	NA	intron (NR_038857, intron 7 of 7)	AluSx1|SINE|Alu	-32516	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
140470	chr2	233176571	233176730	+	0	NA	intron (NM_001017915, intron 17 of 26).2	(TGGA)n|Simple_repeat|Simple_repeat	-74921	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
47977	chr12	6889771	6890130	+	0	NA	promoter-TSS (NR_135083)	promoter-TSS (NR_135083)	-592	NR_135083	105369632		NR_135083	ENSG00000111671	LOC105369632	-	uncharacterized LOC105369632	ncRNA
191890	chr6	15340101	15340300	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	91345	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
180719	chr5	27438951	27439050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-33292	NR_038848	643401		NR_038848	ENSG00000250337	PURPL	LINC01021	p53 upregulated regulator of p53 levels	ncRNA
64974	chr14	37246451	37246630	+	0	NA	intron (NM_001195297, intron 3 of 14)	intron (NM_001195297, intron 3 of 14)	48603	NM_138731	145282		NM_138731	ENSG00000151338	MIPOL1	CCDC193	mirror-image polydactyly 1	protein-coding
42994	chr11	73963401	73963600	+	0	NA	intron (NM_153614, intron 3 of 7)	intron (NM_153614, intron 3 of 7)	12474	NM_001377263	374407		NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
135333	chr2	160376601	160376800	+	0	NA	intron (NM_016836, intron 1 of 13)	AluJr|SINE|Alu	31182	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
207168	chr7	43601721	43602700	+	0	NA	intron (NM_004760, intron 2 of 6)	intron (NM_004760, intron 2 of 6)	19102	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
76005	chr15	70892421	70892900	+	0	NA	promoter-TSS (NM_017691)	promoter-TSS (NM_017691)	-166	NM_017691	54839		NM_017691	ENSG00000137821	LRRC49	CSTPP2|PGs4	leucine rich repeat containing 49	protein-coding
90911	chr17	2517671	2518400	+	0	NA	Intergenic	AluYk12|SINE|Alu	-6147	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
77142	chr15	79896001	79897830	+	0	NA	promoter-TSS (NR_037654)	promoter-TSS (NR_037654)	82	NR_037654	10588		NM_006441	ENSG00000136371	MTHFS	HsT19268|NEDMEHM	methenyltetrahydrofolate synthetase	protein-coding
210188	chr7	98869471	98870750	+	0	NA	promoter-TSS (NM_152913)	promoter-TSS (NM_152913)	-96	NM_001134451	222865		NM_152913	ENSG00000166448	TMEM130	-	transmembrane protein 130	protein-coding
143159	chr20	24037921	24038180	+	0	NA	Intergenic	Intergenic	-49271	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
216367	chr8	17661851	17661950	+	0	NA	intron (NR_156437, intron 7 of 13)	intron (NR_156437, intron 7 of 13)	14601	NM_001330470	57509		NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1	microtubule associated scaffold protein 1	protein-coding
30539	chr10	79450771	79450930	+	0	NA	Intergenic	AluJb|SINE|Alu	-5226	NM_153367	219654		NM_153367	ENSG00000165424	ZCCHC24	C10orf56|Z3CXXC8	zinc finger CCHC-type containing 24	protein-coding
8075	chr1	38998771	38998930	+	0	NA	intron (NM_001136275, intron 2 of 3)	AluSz6|SINE|Alu	7574	NM_024595	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
69362	chr14	94008171	94008730	+	0	NA	TTS (NR_024182)	TTS (NR_024182)	11149	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
25402	chr10	6529901	6531280	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	49686	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
43275	chr11	75768271	75769380	+	0	NA	promoter-TSS (NR_046090)	promoter-TSS (NR_046090)	47	NM_032564	84649		NM_032564	ENSG00000062282	DGAT2	ARAT|GS1999FULL|HMFN1045	diacylglycerol O-acyltransferase 2	protein-coding
30768	chr10	84332051	84332150	+	0	NA	intron (NM_001284241, intron 1 of 2)	L1ME4c|LINE|L1	3511	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
31066	chr10	88996971	88997400	+	0	NA	intron (NR_135314, intron 1 of 8)	intron (NR_135314, intron 1 of 8)	-4210	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
113744	chr19	10491921	10492900	+	0	NA	intron (NM_012289, intron 2 of 5)	MIR|SINE|MIR	10361	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
152515	chr22	20960151	20960250	+	0	NA	intron (NR_110537, intron 1 of 1)	FLAM_C|SINE|Alu	3108	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
112595	chr19	6713871	6714230	+	0	NA	exon (NM_000064, exon 7 of 41)	exon (NM_000064, exon 7 of 41)	6600	NM_000064	718		NM_000064	ENSG00000125730	C3	AHUS5|ARMD9|ASP|C3a|C3b|CPAMD1|HEL-S-62p	complement C3	protein-coding
82962	chr16	21924101	21924300	+	0	NA	Intergenic	AluSx3|SINE|Alu	-29161	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
158137	chr22	50176901	50177330	+	0	NA	non-coding (NR_027691, exon 3 of 5)	non-coding (NR_027691, exon 3 of 5)	6384	NM_052839	56666		NM_052839	ENSG00000073150	PANX2	PX2|hPANX2	pannexin 2	protein-coding
190258	chr5	179023451	179024230	+	0	NA	promoter-TSS (NM_001136116)	promoter-TSS (NM_001136116)	36	NM_001353374	345462		NM_001136116	ENSG00000234284	ZNF879	DKFZp686E2433	zinc finger protein 879	protein-coding
55039	chr12	96393051	96393850	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	6989	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
196427	chr6	43450801	43451000	+	0	NA	TTS (NM_001198934)	TTS (NM_001198934)	4648	NM_023932	65989		NM_023932	ENSG00000171462	DLK2	DLK-2|EGFL9	delta like non-canonical Notch ligand 2	protein-coding
184442	chr5	99060351	99060900	+	0	NA	Intergenic	Intergenic	131491	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
51031	chr12	49751871	49752030	+	0	NA	intron (NM_001098576, intron 1 of 9)	AluSx|SINE|Alu	10141	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
167523	chr3	129281051	129281150	+	0	NA	intron (NM_001370345, intron 2 of 5)	AluSc|SINE|Alu	2106	NM_001370343	56941		NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine binding, ES cell specific	protein-coding
38570	chr11	46100691	46101730	+	0	NA	intron (NR_147890, intron 1 of 18)	intron (NR_147890, intron 1 of 18)	19609	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
123466	chr19	54157521	54157780	+	0	NA	intron (NM_024316, intron 2 of 3).2	AluSx|SINE|Alu	2071	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
132068	chr2	101267171	101267650	+	0	NA	intron (NM_017546, intron 5 of 6)	AluSz|SINE|Alu	5639	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
98375	chr17	46417971	46418130	+	0	NA	intron (NR_033799, intron 4 of 6)	Tigger13a|DNA|TcMar-Tigger	45237	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
224347	chr9	6873801	6874230	+	0	NA	intron (NR_148677, intron 5 of 21)	Tigger1|DNA|TcMar-Tigger	116042	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
60074	chr13	33743771	33744350	+	0	NA	Intergenic	Intergenic	-67266	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
219313	chr8	70131201	70131630	+	0	NA	intron (NM_001321713, intron 15 of 21)	intron (NM_001321713, intron 15 of 21)	-60163	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
94011	chr17	25920151	25920250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1169041	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
95406	chr17	36066321	36067430	+	0	NA	intron (NM_002988, intron 1 of 2).3	intron (NM_002988, intron 1 of 2).3	2603	NM_002988	6362		NM_002988	ENSG00000275385	CCL18	AMAC-1|AMAC1|CKb7|DC-CK1|DCCK1|MIP-4|PARC|SCYA18	C-C motif chemokine ligand 18	protein-coding
84139	chr16	29731971	29732850	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	13580	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
104672	chr17	81495001	81495400	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	17599	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
27249	chr10	29657471	29658100	+	0	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	-22814	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
224223	chr9	5625821	5626100	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3147	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
98423	chr17	46770951	46771400	+	0	NA	intron (NM_030753, intron 2 of 4)	CpG	47517	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
57502	chr12	122099301	122100400	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	21094	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
215494	chr7	158587621	158589130	+	0	NA	promoter-TSS (NM_001308267)	promoter-TSS (NM_001308267)	-552	NM_002847	5799		NM_002847	ENSG00000155093	PTPRN2	IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2	protein tyrosine phosphatase receptor type N2	protein-coding
205210	chr7	7848221	7848550	+	0	NA	intron (NM_001302350, intron 4 of 4)	intron (NM_001302350, intron 4 of 4)	120367	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
173945	chr4	25859001	25860260	+	0	NA	intron (NM_001297592, intron 1 of 23)	Tigger19a|DNA|TcMar-Tigger	3358	NM_015187	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
162170	chr3	46986571	46986730	+	0	NA	intron (NM_015175, intron 1 of 53)	intron (NM_015175, intron 1 of 53)	-1340	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
222527	chr8	140573601	140573880	+	0	NA	intron (NM_012154, intron 2 of 18)	intron (NM_012154, intron 2 of 18)	61744	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
113643	chr19	10347351	10347650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7876	NM_002162	3385		NM_002162	ENSG00000076662	ICAM3	CD50|CDW50|ICAM-R	intercellular adhesion molecule 3	protein-coding
220849	chr8	103140451	103141180	+	0	NA	promoter-TSS (NM_024812)	promoter-TSS (NM_024812)	90	NM_024812	79870		NM_024812	ENSG00000164929	BAALC	-	BAALC binder of MAP3K1 and KLF4	protein-coding
180687	chr5	21482571	21483400	+	0	NA	intron (NR_027026, intron 3 of 4)	intron (NR_027026, intron 3 of 4)	23505	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
213729	chr7	140362101	140362550	+	0	NA	intron (NM_032295, intron 5 of 11)	SVA_E|Retroposon|SVA	36205	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
145431	chr20	43466201	43466580	+	0	NA	Intergenic	AluSz|SINE|Alu	8494	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
46288	chr11	124867551	124868130	+	0	NA	intron (NM_022370, intron 1 of 27)	intron (NM_022370, intron 1 of 27)	2408	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
235932	chrX	53195371	53196030	+	0	NA	promoter-TSS (NR_106955)	promoter-TSS (NR_106955)	-212	NR_106955	102465539		NR_106955	ENSG00000276575	MIR6895	hsa-mir-6895	microRNA 6895	ncRNA
209503	chr7	76955721	76956180	+	0	NA	Intergenic	AluJo|SINE|Alu	-24872	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
123498	chr19	54203201	54204150	+	0	NA	intron (NM_001321706, intron 3 of 3).8	AluSz|SINE|Alu	2817	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
117822	chr19	30046571	30046880	+	0	NA	Intergenic	Intergenic	104486	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
132096	chr2	101329111	101329700	+	0	NA	Intergenic	Intergenic	19955	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
206700	chr7	36512001	36512400	+	0	NA	TTS (NM_001177507)	TTS (NM_001177507)	87920	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
14045	chr1	120758001	120758830	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	34476	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
9196	chr1	45613221	45613780	+	0	NA	intron (NM_001195193, intron 5 of 12)	AluJr4|SINE|Alu	10554	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
181803	chr5	52657171	52657400	+	0	NA	Intergenic	Intergenic	-130631	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
219019	chr8	63405651	63405750	+	0	NA	Intergenic	AluY|SINE|Alu	-60149	NR_125825	102724612		NR_125825	ENSG00000253894	LOC102724612	-	uncharacterized LOC102724612	ncRNA
7465	chr1	33097151	33097580	+	0	NA	intron (NR_146649, intron 8 of 10)	MIR|SINE|MIR	15187	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
147263	chr20	57439001	57439800	+	0	NA	Intergenic	Intergenic	-46344	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
59015	chr13	20189201	20189600	+	0	NA	exon (NM_004004, exon 2 of 2)	exon (NM_004004, exon 2 of 2)	3538	NM_004004	2706		NM_004004	ENSG00000165474	GJB2	BAPS|CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein beta 2	protein-coding
172276	chr4	1520501	1521580	+	0	NA	Intergenic	CpG	-114598	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
164147	chr3	56761101	56761300	+	0	NA	intron (NM_001289698, intron 3 of 10)	intron (NM_001289698, intron 3 of 10)	14517	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
95355	chr17	35849371	35850600	+	0	NA	Intergenic	L2|LINE|L2	18906	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
46939	chr11	134391121	134391380	+	0	NA	intron (NM_054025, intron 1 of 5)	intron (NM_054025, intron 1 of 5)	20668	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
5884	chr1	26785721	26786180	+	0	NA	Intergenic	Intergenic	-1104	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
7732	chr1	36126551	36127250	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-1678	NM_001294347	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
18591	chr1	165444721	165445450	+	0	NA	promoter-TSS (NR_033824)	promoter-TSS (NR_033824)	41	NR_033824	6258		NM_006917	ENSG00000143171	RXRG	NR2B3|RXR-gamma|RXRC|RXRgamma	retinoid X receptor gamma	protein-coding
107946	chr18	58135271	58135430	+	0	NA	intron (NM_001144964, intron 1 of 30)	intron (NM_001144964, intron 1 of 30)	-13970	NM_001144968	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
49053	chr12	14398371	14398730	+	0	NA	intron (NM_181352, intron 1 of 14)	L1MD|LINE|L1	13269	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
185818	chr5	132448101	132448680	+	0	NA	intron (NR_161242, intron 2 of 3)	L2a|LINE|L2	37461	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
65785	chr14	54564801	54565500	+	0	NA	Intergenic	CpG	-1978	NM_015589	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
222370	chr8	133582171	133582330	+	0	NA	Intergenic	Intergenic	-10363	NM_173344	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
54950	chr12	96240151	96240530	+	0	NA	intron (NM_005230, intron 2 of 4)	intron (NM_005230, intron 2 of 4)	-15158	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
105234	chr17	82381351	82381800	+	0	NA	Intergenic	Intergenic	9810	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
43622	chr11	83190121	83190730	+	0	NA	TTS (NR_149008)	TTS (NR_149008)	-2941	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
155430	chr22	38453851	38454850	+	0	NA	intron (NM_152868, intron 1 of 1)	intron (NM_152868, intron 1 of 1)	849	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
222845	chr8	142617121	142618180	+	0	NA	Intergenic	Intergenic	-3171	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
17173	chr1	156221951	156222250	+	0	NA	intron (NM_001199664, intron 1 of 4)	L2a|LINE|L2	9112	NM_001199653	11243		NM_007221	ENSG00000160783	PMF1	-	polyamine modulated factor 1	protein-coding
207196	chr7	43631421	43632100	+	0	NA	non-coding (NR_146941, exon 9 of 10)	non-coding (NR_146941, exon 9 of 10)	48652	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
182715	chr5	68246551	68247430	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	31234	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
159992	chr3	18349221	18349680	+	0	NA	exon (NM_001322872, exon 12 of 12)	exon (NM_001322872, exon 12 of 12)	75889	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
119912	chr19	41641901	41642180	+	0	NA	Intergenic	MIR|SINE|MIR	-14966	NM_001362493	1089		NM_001817	ENSG00000105352	CEACAM4	CGM7|CGM7_HUMAN|NCA	CEA cell adhesion molecule 4	protein-coding
107690	chr18	49459651	49461080	+	0	NA	intron (NM_001374428, intron 1 of 18)	CpG	280	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
10945	chr1	84161151	84161450	+	0	NA	intron (NM_182948, intron 1 of 9)	L1MB8|LINE|L1	-2884	NM_001242857	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
29470	chr10	70558071	70558230	+	0	NA	intron (NM_014431, intron 18 of 19)	AluJo|SINE|Alu	44591	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
225748	chr9	37107471	37107900	+	0	NA	Intergenic	Intergenic	-12787	NR_110317	84186		NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
73830	chr15	49157071	49157230	+	0	NA	non-coding (NR_036507, exon 1 of 1)	non-coding (NR_036507, exon 1 of 1)	852	NR_036507	100306975		NR_036507		NDUFAF4P1	-	NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 1	pseudo
72350	chr15	31337301	31338000	+	0	NA	intron (NM_001302461, intron 1 of 1).3	Tigger3a|DNA|TcMar-Tigger	10815	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
35550	chr11	1628721	1630000	+	0	NA	promoter-TSS (NM_001001480)	promoter-TSS (NM_001001480)	-443	NM_001001480	439915		NM_001001480	ENSG00000185940	KRTAP5-5	KRTAP5-11|KRTAP5.5	keratin associated protein 5-5	protein-coding
23790	chr1	234065951	234066230	+	0	NA	intron (NM_173508, intron 2 of 7)	intron (NM_173508, intron 2 of 7)	-148121	NM_001300845	148641		NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
38621	chr11	46340301	46340500	+	0	NA	intron (NM_201532, intron 1 of 30)	intron (NM_201532, intron 1 of 30)	-4867	NM_201533	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
119283	chr19	39705901	39706100	+	0	NA	exon (NM_203471, exon 2 of 5)	exon (NM_203471, exon 2 of 5)	1519	NM_020129	56891		NM_020129	ENSG00000006659	LGALS14	CLC2|PPL13	galectin 14	protein-coding
237808	chrX	129935821	129936150	+	0	NA	Intergenic	Intergenic	29821	NM_006649	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
64627	chr14	31028071	31028900	+	0	NA	intron (NM_001254728, intron 1 of 5)	intron (NM_001254728, intron 1 of 5)	1842	NM_001254728	11154		NM_007077	ENSG00000100478	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor related protein complex 4 subunit sigma 1	protein-coding
205037	chr7	6532201	6532400	+	0	NA	intron (NM_001145118, intron 2 of 21)	intron (NM_001145118, intron 2 of 21)	19136	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
135039	chr2	156325901	156326400	+	0	NA	exon (NM_006186, exon 7 of 8)	exon (NM_006186, exon 7 of 8)	6571	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
120824	chr19	45492351	45492880	+	0	NA	intron (NM_206900, intron 4 of 9)	intron (NM_206900, intron 4 of 9)	638	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
168879	chr3	152305221	152305780	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	6486	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
141100	chr2	238424601	238425130	+	0	NA	Intergenic	MIR|SINE|MIR	-2062	NM_001040445	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
24874	chr10	926071	926230	+	0	NA	intron (NM_001351277, intron 1 of 17)	L2b|LINE|L2	5555	NM_001351277	23185		NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	La ribonucleoprotein 4B	protein-coding
151101	chr21	44853651	44853750	+	0	NA	intron (NM_001286822, intron 2 of 2)	intron (NM_001286822, intron 2 of 2)	19990	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
18262	chr1	161073071	161073400	+	0	NA	exon (NM_030916, exon 8 of 9)	exon (NM_030916, exon 8 of 9)	-3344	NM_001287602	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
97787	chr17	44756171	44756330	+	0	NA	Intergenic	AluY|SINE|Alu	-2738	NM_001318933	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
22058	chr1	211320921	211321200	+	0	NA	Intergenic	L1ME1|LINE|L1	-5555	NM_004619	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
110599	chr19	2177071	2177580	+	0	NA	intron (NM_032482, intron 1 of 27)	AluSx|SINE|Alu	13392	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
150519	chr21	42924951	42925050	+	0	NA	intron (NM_001308491, intron 1 of 1)	AluSg4|SINE|Alu	598	NM_001308491	90625		NM_001308491	ENSG00000233056	ERVH48-1	C21orf105|NDUFV3-AS1|SUPYN	endogenous retrovirus group 48 member 1, envelope	protein-coding
239490	chrY	56749721	56749980	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-204405	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
23765	chr1	232944451	232944700	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-6036	NR_138025	84284		NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase|THEP1	nucleoside-triphosphatase, cancer-related	protein-coding
105380	chr17	82703851	82704280	+	0	NA	Intergenic	Intergenic	-5367	NM_006822	10966		NM_006822	ENSG00000141542	RAB40B	RAR|SEC4L	RAB40B, member RAS oncogene family	protein-coding
4922	chr1	23904771	23904930	+	0	NA	intron (NM_001841, intron 1 of 1)	intron (NM_001841, intron 1 of 1)	8512	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
68496	chr14	88045051	88045150	+	0	NA	intron (NR_046094, intron 2 of 3)	intron (NR_046094, intron 2 of 3)	-18788	NR_110121	101928791		NR_110121		LINC01147	-	long intergenic non-protein coding RNA 1147	ncRNA
50050	chr12	44546371	44546730	+	0	NA	intron (NM_001145108, intron 15 of 19)	intron (NM_001145108, intron 15 of 19)	329111	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
67357	chr14	69708651	69709080	+	0	NA	exon (NM_014734, exon 5 of 6)	exon (NM_014734, exon 5 of 6)	-58277	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
154511	chr22	35900771	35901330	+	0	NA	intron (NM_001349999, intron 2 of 13)	MIRb|SINE|MIR	60580	NM_001349996	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
114591	chr19	12941701	12941880	+	0	NA	intron (NM_004343, intron 7 of 8)	AluSq2|SINE|Alu	1306	NR_106770	102466659		NR_106770	ENSG00000274417	MIR6515	hsa-mir-6515|mir-6515	microRNA 6515	ncRNA
220876	chr8	103419571	103419800	+	0	NA	intron (NM_015420, intron 1 of 10)	intron (NM_015420, intron 1 of 10)	4299	NM_015420	25879		NM_015420	ENSG00000164934	DCAF13	GM83|HSPC064|Sof1|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
204090	chr7	2110271	2110430	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-21298	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
67159	chr14	68779301	68780500	+	0	NA	Intergenic	L3|LINE|CR1	13167	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
74492	chr15	60005571	60005730	+	0	NA	exon (NM_012182, exon 2 of 2)	exon (NM_012182, exon 2 of 2)	1339	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
131888	chr2	98734901	98735500	+	0	NA	Intergenic	Intergenic	-4068	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
147686	chr20	62311771	62311930	+	0	NA	intron (NM_005560, intron 70 of 79)	intron (NM_005560, intron 70 of 79)	8853	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
178771	chr4	153429321	153429780	+	0	NA	Intergenic	Intergenic	-36796	NM_015196	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
205804	chr7	24290151	24290500	+	0	NA	intron (NM_000905, intron 3 of 3)	intron (NM_000905, intron 3 of 3)	6135	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
154836	chr22	37070571	37071280	+	0	NA	exon (NM_001289000, exon 14 of 19)	exon (NM_001289000, exon 14 of 19)	19189	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
13198	chr1	112628621	112629130	+	0	NA	intron (NM_006135, intron 1 of 9)	L2a|LINE|L2	9043	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
26816	chr10	23540451	23540750	+	0	NA	Intergenic	Intergenic	101525	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
187515	chr5	142419621	142420200	+	0	NA	intron (NR_120664, intron 3 of 3)	AluSx|SINE|Alu	94617	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
145396	chr20	41428071	41428630	+	0	NA	intron (NM_032221, intron 27 of 36)	intron (NM_032221, intron 27 of 36)	-61532	NM_052846	90187		NM_052846	ENSG00000183798	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
170245	chr3	184230651	184232000	+	0	NA	intron (NM_138345, intron 2 of 18)	intron (NM_138345, intron 2 of 18)	972	NM_138345	90113		NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
172027	chr4	993621	993880	+	0	NA	promoter-TSS (NM_213613)	promoter-TSS (NM_213613)	-346	NM_022042	10861		NM_022042	ENSG00000145217	SLC26A1	CAON|CAON1|EDM4|HYSULF|SAT-1|SAT1	solute carrier family 26 member 1	protein-coding
176302	chr4	87377751	87378080	+	0	NA	intron (NM_016245, intron 2 of 6)	MIRb|SINE|MIR	13273	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
84906	chr16	31214471	31215200	+	0	NA	exon (NM_001008274, exon 2 of 7)	exon (NM_001008274, exon 2 of 7)	716	NM_001008274	493829		NM_001008274	ENSG00000177238	TRIM72	MG53	tripartite motif containing 72	protein-coding
132404	chr2	105795501	105796700	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	51037	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
91526	chr17	4980351	4981730	+	0	NA	intron (NM_001171166, intron 7 of 20)	intron (NM_001171166, intron 7 of 20)	6421	NM_001171167	23125		NM_015099	ENSG00000108509	CAMTA2	-	calmodulin binding transcription activator 2	protein-coding
13405	chr1	113969321	113969580	+	0	NA	intron (NM_181358, intron 11 of 13)	MIR|SINE|MIR	-9941	NM_001286353	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
5354	chr1	25331871	25332430	+	0	NA	intron (NR_135790, intron 1 of 2)	AluSz|SINE|Alu	6104	NM_001321772	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
13891	chr1	119323871	119324230	+	0	NA	Intergenic	MER53|DNA|hAT	-4202	NR_146623	105378934		NR_146623	ENSG00000232650	LINC01780	-	long intergenic non-protein coding RNA 1780	ncRNA
81342	chr16	4773871	4774030	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6788	NM_001303450	26048		NM_021646	ENSG00000103199	ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
92122	chr17	7593351	7593850	+	0	NA	exon (NM_004860, exon 12 of 17)	exon (NM_004860, exon 12 of 17)	-3506	NM_006942	6665		NM_006942	ENSG00000129194	SOX15	SOX20|SOX26|SOX27	SRY-box transcription factor 15	protein-coding
144510	chr20	35694721	35695300	+	0	NA	intron (NR_037570, intron 4 of 13)	intron (NR_037570, intron 4 of 13)	4342	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
138818	chr2	216328451	216328650	+	0	NA	intron (NM_020814, intron 1 of 3)	intron (NM_020814, intron 1 of 3)	43933	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
49786	chr12	31897871	31898600	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-11032	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
29609	chr10	71755201	71755850	+	0	NA	intron (NM_022153, intron 3 of 6)	intron (NM_022153, intron 3 of 6)	-17675	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
78530	chr15	92950601	92950830	+	0	NA	intron (NM_001271, intron 13 of 38)	AluJb|SINE|Alu	46316	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
201925	chr6	151396251	151396900	+	0	NA	Intergenic	Intergenic	-5016	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
119666	chr19	40832251	40832550	+	0	NA	Intergenic	AluSx1|SINE|Alu	18047	NM_000762	1548		NM_000762	ENSG00000255974	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450 family 2 subfamily A member 6	protein-coding
188039	chr5	149729551	149730590	+	0	NA	promoter-TSS (NM_001172698)	promoter-TSS (NM_001172698)	-240	NM_001172698	133522		NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
96812	chr17	41928621	41929330	+	0	NA	Intergenic	Intergenic	-1642	NR_146621	83538		NM_031421	ENSG00000204815	ODAD4	TTC25	outer dynein arm docking complex subunit 4	protein-coding
7310	chr1	32539321	32540330	+	0	NA	intron (NM_001291496, intron 1 of 4)	CpG	398	NM_001291496	653121		NM_144621	ENSG00000160062	ZBTB8A	BOZF1|ZBTB8|ZNF916A	zinc finger and BTB domain containing 8A	protein-coding
193608	chr6	30733801	30734000	+	0	NA	intron (NM_001318875, intron 7 of 11).2	AluJb|SINE|Alu	8787	NM_005803	10211		NM_005803	ENSG00000137312	FLOT1	-	flotillin 1	protein-coding
219160	chr8	66459721	66460280	+	0	NA	intron (NM_144650, intron 12 of 13)	intron (NM_144650, intron 12 of 13)	27496	NM_144650	137872		NM_144650	ENSG00000147576	ADHFE1	ADH8|HMFT2263|HOT	alcohol dehydrogenase iron containing 1	protein-coding
158269	chr22	50329601	50330130	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2853	NM_001001794	414918		NM_001001794	ENSG00000205593	DENND6B	AFI1B|FAM116B	DENN domain containing 6B	protein-coding
144767	chr20	36619251	36619950	+	0	NA	intron (NM_175077, intron 5 of 7)	AluJr|SINE|Alu	13821	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
114417	chr19	12666011	12667280	+	0	NA	promoter-TSS (NM_000528)	promoter-TSS (NM_000528)	97	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
154497	chr22	35662371	35662850	+	0	NA	3' UTR (NM_030641, exon 3 of 3)	3' UTR (NM_030641, exon 3 of 3)	14164	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
129443	chr2	69498001	69498200	+	0	NA	intron (NM_001371575, intron 16 of 20)	intron (NM_001371575, intron 16 of 20)	22071	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
80006	chr16	1916301	1917100	+	0	NA	intron (NM_001009606, intron 1 of 1)	intron (NM_001009606, intron 1 of 1)	1715	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
70579	chr14	102609601	102609900	+	0	NA	intron (NM_015156, intron 2 of 11)	intron (NM_015156, intron 2 of 11)	17101	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
230486	chr9	128226101	128226300	+	0	NA	intron (NM_001288739, intron 10 of 21)	intron (NM_001288739, intron 10 of 21)	18630	NR_029619	406978		NR_029619	ENSG00000207581	MIR199B	MIRN199B|mir-199b	microRNA 199b	ncRNA
177129	chr4	108107801	108108830	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	58482	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
81708	chr16	11249321	11249850	+	0	NA	Intergenic	CpG	6597	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
52875	chr12	57184101	57184330	+	0	NA	intron (NM_002332, intron 37 of 88)	intron (NM_002332, intron 37 of 88)	-10289	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
142339	chr20	3732171	3732750	+	0	NA	promoter-TSS (NM_052970)	promoter-TSS (NM_052970)	-225	NM_052970	116835		NM_052970	ENSG00000132622	HSPA12B	C20orf60	heat shock protein family A (Hsp70) member 12B	protein-coding
22126	chr1	211827401	211828230	+	0	NA	intron (NM_001375842, intron 2 of 7)	intron (NM_001375842, intron 2 of 7)	-1822	NR_135818	102723727		NR_135818	ENSG00000229258	LPGAT1-AS1	-	LPGAT1 antisense RNA 1	ncRNA
166253	chr3	112335201	112335600	+	0	NA	intron (NM_001318828, intron 1 of 4)	intron (NM_001318828, intron 1 of 4)	2244	NM_005944	4345		NM_005944	ENSG00000091972	CD200	MOX1|MOX2|MRC|OX-2	CD200 molecule	protein-coding
137238	chr2	191682121	191683330	+	0	NA	intron (NR_045623, intron 4 of 6)	intron (NR_045623, intron 4 of 6)	4589	NM_001031716	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
193958	chr6	31687301	31687750	+	0	NA	exon (NM_021160, exon 19 of 20).3	exon (NM_021160, exon 19 of 20).3	-7152	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
128675	chr2	61473751	61473850	+	0	NA	Intergenic	Intergenic	-2713	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
235505	chrX	47158271	47158430	+	0	NA	intron (NM_005676, intron 2 of 23)	intron (NM_005676, intron 2 of 23)	13129	NM_152856	8241		NM_005676	ENSG00000182872	RBM10	DXS8237E|GPATC9|GPATCH9|MINAS-60|S1-1|TARPS|ZRANB5	RNA binding motif protein 10	protein-coding
19385	chr1	174019321	174019580	+	0	NA	intron (NM_172071, intron 1 of 19)	MIR3|SINE|MIR	2907	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
121478	chr19	47111071	47111600	+	0	NA	intron (NM_015168, intron 2 of 14)	CpG	2441	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
21522	chr1	205807171	205807330	+	0	NA	intron (NM_173854, intron 2 of 10)	intron (NM_173854, intron 2 of 10)	5948	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
68285	chr14	77122851	77123150	+	0	NA	Intergenic	Intergenic	17744	NM_001364172	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
9234	chr1	45802921	45804650	+	0	NA	5' UTR (NM_015112, exon 1 of 29)	5' UTR (NM_015112, exon 1 of 29)	172	NM_001319245	23139		NM_015112	ENSG00000086015	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
8112	chr1	39204121	39204800	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	120293	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
34794	chr11	238451	238900	+	0	NA	intron (NM_175932, intron 1 of 10)	AluSx|SINE|Alu	1699	NM_002817	5719		NM_002817	ENSG00000185627	PSMD13	HSPC027|Rpn9|S11|p40.5	proteasome 26S subunit, non-ATPase 13	protein-coding
188333	chr5	151239121	151239830	+	0	NA	Intergenic	Intergenic	-13710	NM_000405	2760		NM_000405	ENSG00000196743	GM2A	GM2-AP|GM2AP|SAP-3	ganglioside GM2 activator	protein-coding
224841	chr9	27529251	27529960	+	0	NA	5' UTR (NM_024761, exon 1 of 4)	5' UTR (NM_024761, exon 1 of 4)	209	NM_024761	79817		NM_024761	ENSG00000120162	MOB3B	C9orf35|MOB1D|MOBKL2B	MOB kinase activator 3B	protein-coding
61593	chr13	72785321	72785650	+	0	NA	intron (NM_006346, intron 2 of 17)	MIR|SINE|MIR	3352	NR_146206	10464		NM_006346	ENSG00000083535	PIBF1	C13orf24|CEP90|JBTS33|PIBF	progesterone immunomodulatory binding factor 1	protein-coding
216955	chr8	22997651	22997750	+	0	NA	intron (NM_001374791, intron 1 of 9)	intron (NM_001374791, intron 1 of 9)	928	NM_001374791	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
119698	chr19	41119651	41120180	+	0	NA	intron (NR_135528, intron 3 of 9)	AluSx|SINE|Alu	5483	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
159618	chr3	15269321	15270350	+	0	NA	exon (NM_004844, exon 4 of 9)	exon (NM_004844, exon 4 of 9)	15651	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
189947	chr5	177403231	177404100	+	0	NA	intron (NM_000505, intron 10 of 13)	CpG-22863	-3004	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
207072	chr7	39953451	39953830	+	0	NA	intron (NM_003718, intron 1 of 13)	L2a|LINE|L2	3280	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
84337	chr16	30188801	30190080	+	0	NA	TTS (NR_002454).2	TTS (NR_002454).2	756	NR_002454	606724		NR_002454		LOC606724	-	coronin 1A pseudogene	pseudo
168846	chr3	152271671	152272130	+	0	NA	intron (NM_001376823, intron 1 of 10)	MER33|DNA|hAT-Charlie	-2274	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
227727	chr9	93053971	93054130	+	0	NA	Intergenic	Intergenic	-4638	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
142033	chr20	1674171	1675150	+	0	NA	Intergenic	MIRb|SINE|MIR	-16881	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
161758	chr3	44759121	44759380	+	0	NA	intron (NM_001320334, intron 1 of 2)	Tigger1|DNA|TcMar-Tigger	2369	NM_020696	57456		NM_020696	ENSG00000163807	KIAA1143	-	KIAA1143	protein-coding
216605	chr8	22054051	22055550	+	0	NA	promoter-TSS (NM_001323389)	promoter-TSS (NM_001323389)	-107	NM_001323383	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
159485	chr3	14155001	14155600	+	0	NA	intron (NM_001354727, intron 9 of 15)	intron (NM_001354727, intron 9 of 15)	23301	NR_148951	7508		NM_004628	ENSG00000154767	XPC	RAD4|XP3|XPCC|p125	XPC complex subunit, DNA damage recognition and repair factor	protein-coding
140335	chr2	232542971	232543330	+	0	NA	TTS (NM_145702)	TTS (NM_145702)	3458	NM_005199	1146		NM_005199	ENSG00000196811	CHRNG	ACHRG	cholinergic receptor nicotinic gamma subunit	protein-coding
33870	chr10	124413071	124413880	+	0	NA	intron (NM_001322965, intron 1 of 9)	AluSp|SINE|Alu	5448	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
56847	chr12	120251821	120252970	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	-2232	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
162624	chr3	48715951	48716050	+	0	NA	intron (NM_001190316, intron 1 of 2)	intron (NM_001190316, intron 1 of 2)	1221	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
73728	chr15	45183071	45183380	+	0	NA	intron (NM_138356, intron 2 of 7)	MIR|SINE|MIR	-2018	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
177994	chr4	139278901	139279530	+	0	NA	intron (NM_032623, intron 1 of 3)	intron (NM_032623, intron 1 of 3)	1010	NM_032623	84709		NM_032623	ENSG00000137463	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria localized glutamic acid rich protein	protein-coding
17008	chr1	156016121	156016600	+	0	NA	intron (NM_003145, intron 3 of 5)	AluY|SINE|Alu	4591	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
29063	chr10	67882701	67883050	+	0	NA	Intergenic	L1PA8|LINE|L1	-1781	NM_012238	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
8027	chr1	38044151	38044450	+	0	NA	3' UTR (NM_002699, exon 1 of 1)	3' UTR (NM_002699, exon 1 of 1)	2493	NM_002699	5453		NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
216861	chr8	22618871	22619430	+	0	NA	non-coding (NR_033902, exon 20 of 21)	non-coding (NR_033902, exon 20 of 21)	14108	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
12836	chr1	110052751	110053230	+	0	NA	intron (NR_073071, intron 21 of 21)	intron (NR_073071, intron 21 of 21)	17682	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
13356	chr1	113868301	113868700	+	0	NA	intron (NM_012411, intron 1 of 18)	intron (NM_012411, intron 1 of 18)	3212	NM_015967	26191		NM_012411	ENSG00000134242	PTPN22	LYP|LYP1|LYP2|PEP|PTPN22.5|PTPN22.6|PTPN8	protein tyrosine phosphatase non-receptor type 22	protein-coding
235164	chrX	41127501	41127930	+	0	NA	intron (NM_001039590, intron 2 of 44)	intron (NM_001039590, intron 2 of 44)	42270	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
107979	chr18	58611351	58611880	+	0	NA	intron (NM_052947, intron 2 of 12)	intron (NM_052947, intron 2 of 12)	10995	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
237977	chrX	134173671	134173980	+	0	NA	Intergenic	Intergenic	-3547	NR_029523	406899		NR_029523	ENSG00000284157	MIR106A	MIRN106A|mir-106|mir-106a	microRNA 106a	ncRNA
73183	chr15	41499301	41499700	+	0	NA	intron (NM_002220, intron 1 of 6)	MIR1_Amn|SINE|MIR	5626	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
15762	chr1	151161271	151161430	+	0	NA	intron (NM_212551, intron 2 of 2)	AluY|SINE|Alu	4552	NM_001136543	388695		NM_212551	ENSG00000163155	LYSMD1	SB145	LysM domain containing 1	protein-coding
46106	chr11	122876021	122876280	+	0	NA	Intergenic	AluSp|SINE|Alu	-6378	NM_199124	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
53713	chr12	68609221	68609500	+	0	NA	Intergenic	AluSx|SINE|Alu	-1539	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
132172	chr2	101774871	101775580	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	76960	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
94640	chr17	30114201	30114550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2432	NM_001261467	84081		NM_032141	ENSG00000126653	NSRP1	CCDC55|HSPC095|NEDSSBA|NSrp70	nuclear speckle splicing regulatory protein 1	protein-coding
215006	chr7	152379471	152380000	+	0	NA	intron (NM_170606, intron 1 of 58)	AluJo|SINE|Alu	56268	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
42068	chr11	67487721	67488230	+	0	NA	intron (NM_001302960, intron 2 of 5)	L2b|LINE|L2	-2270	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
172249	chr4	1356101	1356580	+	0	NA	intron (NM_001317935, intron 7 of 13)	intron (NM_001317935, intron 7 of 13)	8784	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
93079	chr17	17593271	17593430	+	0	NA	Intergenic	Intergenic	-1642	NM_001267551	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
162723	chr3	49015251	49015350	+	0	NA	TTS (NM_018114)	TTS (NM_018114)	3280	NM_001009996	55152		NM_018114	ENSG00000178149	DALRD3	DEE86|EIEE86	DALR anticodon binding domain containing 3	protein-coding
145368	chr20	41160201	41160800	+	0	NA	intron (NM_182811, intron 4 of 31)	L2|LINE|L2	-8523	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
165914	chr3	107064471	107064800	+	0	NA	Intergenic	Intergenic	176003	NR_028303	100302640		NR_028303		LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
184711	chr5	109356021	109356280	+	0	NA	intron (NM_014819, intron 6 of 9)	intron (NM_014819, intron 6 of 9)	-29781	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
109335	chr19	602921	603330	+	0	NA	intron (NM_001194, intron 1 of 7)	intron (NM_001194, intron 1 of 7)	13244	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
117795	chr19	29843651	29846130	+	0	NA	Intergenic	CpG	32899	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
157715	chr22	46433501	46433700	+	0	NA	intron (NM_001378328, intron 4 of 34)	intron (NM_001378328, intron 4 of 34)	97886	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
43755	chr11	86147151	86147250	+	0	NA	Intergenic	Intergenic	-77340	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
7709	chr1	36088581	36089800	+	0	NA	TTS (NM_014466)	TTS (NM_014466)	298	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
66916	chr14	65334421	65334680	+	0	NA	TTS (NR_039857)	TTS (NR_039857)	633	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
182701	chr5	68223471	68223850	+	0	NA	intron (NM_181523, intron 1 of 15)	intron (NM_181523, intron 1 of 15)	7904	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
53173	chr12	58946351	58946450	+	0	NA	Intergenic	L1P1|LINE|L1	-25896	NM_153377	121227		NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding
135206	chr2	159093571	159093730	+	0	NA	intron (NM_001350064, intron 3 of 26)	intron (NM_001350064, intron 3 of 26)	-93185	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
56917	chr12	120429651	120429750	+	0	NA	Intergenic	L2b|LINE|L2	-8413	NM_004373	1337		NM_004373	ENSG00000111775	COX6A1	CMTRID|COX6A|COX6AL	cytochrome c oxidase subunit 6A1	protein-coding
109881	chr19	1252601	1254650	+	0	NA	intron (NM_177401, intron 4 of 7)	intron (NM_177401, intron 4 of 7)	5072	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
185668	chr5	131618971	131619130	+	0	NA	intron (NM_016340, intron 1 of 27)	L1MC4|LINE|L1	16179	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
234430	chrX	16840871	16841030	+	0	NA	intron (NM_018360, intron 9 of 9)	AluSc|SINE|Alu	28913	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
158185	chr22	50227801	50228480	+	0	NA	intron (NM_020461, intron 4 of 24)	intron (NM_020461, intron 4 of 24)	16883	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
5649	chr1	26283271	26283430	+	0	NA	intron (NM_145345, intron 12 of 14)	L2c|LINE|L2	3264	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
198577	chr6	107486971	107487530	+	0	NA	Intergenic	Intergenic	-2867	NM_018013	55084		NM_018013	ENSG00000112320	SOBP	JXC1|MRAMS	sine oculis binding protein homolog	protein-coding
79336	chr16	580951	581550	+	0	NA	intron (NM_148920, intron 9 of 9)	intron (NM_148920, intron 9 of 9)	-8107	NM_001172663	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
146072	chr20	47504521	47504780	+	0	NA	intron (NM_181659, intron 1 of 22)	AluSx3|SINE|Alu	2763	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
110708	chr19	2304401	2304630	+	0	NA	intron (NM_001101391, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	3639	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
111195	chr19	3456651	3456750	+	0	NA	intron (NM_205843, intron 10 of 10)	intron (NM_205843, intron 10 of 10)	23825	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
80344	chr16	2474801	2476300	+	0	NA	intron (NM_001199107, intron 1 of 7)	CpG-9103	423	NM_020705	57465		NM_020705	ENSG00000162065	TBC1D24	DEE16|DFNA65|DFNB86|DOORS|EIEE16|EIM|EPRPDC|FIME|TLDC6	TBC1 domain family member 24	protein-coding
151115	chr21	44874701	44876000	+	0	NA	Intergenic	ERV24B_Prim-int|LTR|ERV1	-1447	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
220972	chr8	115274171	115274330	+	0	NA	Intergenic	Intergenic	393763	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
2179	chr1	8517851	8518430	+	0	NA	intron (NM_012102, intron 8 of 23)	intron (NM_012102, intron 8 of 23)	-23227	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
102391	chr17	75579571	75579930	+	0	NA	Intergenic	AluY|SINE|Alu	-8308	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
128392	chr2	55050001	55051350	+	0	NA	promoter-TSS (NM_001321861)	promoter-TSS (NM_001321861)	-77	NM_001321860	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133592	chr2	121700601	121701500	+	0	NA	intron (NR_037857, intron 2 of 3)	intron (NR_037857, intron 2 of 3)	35825	NM_032390	84365		NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
83731	chr16	28593171	28594080	+	0	NA	intron (NM_177528, intron 4 of 7)	MIRb|SINE|MIR	2855	NM_177528	6799		NM_001054	ENSG00000197165	SULT1A2	HAST4|P-PST|P-PST 2|ST1A2|STP2|TSPST2	sulfotransferase family 1A member 2	protein-coding
154932	chr22	37220551	37221080	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-8338	NM_001051	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
88678	chr16	85715421	85715880	+	0	NA	intron (NR_161452, intron 2 of 4)	MER58A|DNA|hAT-Charlie	26050	NR_031731	100302261		NR_031731	ENSG00000283416	MIR1910	MIRN1910|hsa-mir-1910|mir-1910	microRNA 1910	ncRNA
7183	chr1	32265671	32265830	+	0	NA	intron (NM_005356, intron 1 of 12)	intron (NM_005356, intron 1 of 12)	-8361	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
148734	chr21	7257901	7258100	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-172637	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
230722	chr9	128812771	128812930	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5650	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
66846	chr14	64935421	64936080	+	0	NA	TTS (NM_001204064)	TTS (NM_001204064)	6995	NR_046320	2877		NM_002083	ENSG00000176153	GPX2	GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2	glutathione peroxidase 2	protein-coding
140881	chr2	237603351	237604450	+	0	NA	Intergenic	Intergenic	-13166	NM_022449	64284		NM_022449	ENSG00000124839	RAB17	-	RAB17, member RAS oncogene family	protein-coding
93995	chr17	22378001	22378400	+	0	NA	Intergenic	Intergenic	-27819	NR_027084	284124		NR_027084	ENSG00000276399	FLJ36000	-	uncharacterized FLJ36000	ncRNA
88367	chr16	84591371	84591730	+	0	NA	intron (NM_021149, intron 2 of 3)	AluJb|SINE|Alu	26528	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
227671	chr9	92985271	92985530	+	0	NA	intron (NM_001369951, intron 3 of 17)	MER50-int|LTR|ERV1	10931	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
211945	chr7	112474871	112475400	+	0	NA	intron (NM_001550, intron 11 of 11)	AluSc8|SINE|Alu	-5718	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
47236	chr12	993901	994100	+	0	NA	intron (NR_027946, intron 1 of 18)	AluSx|SINE|Alu	2777	NR_027948	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
46433	chr11	128037221	128038200	+	0	NA	Intergenic	(CCTT)n|Simple_repeat|Simple_repeat	-171056	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
180635	chr5	16791121	16791480	+	0	NA	intron (NM_012334, intron 4 of 40)	intron (NM_012334, intron 4 of 40)	144988	NM_012334	4651		NM_012334	ENSG00000145555	MYO10	MyoX	myosin X	protein-coding
161570	chr3	42811571	42811730	+	0	NA	intron (NM_001296, intron 1 of 2)	LTR5B|LTR|ERVK	2205	NM_001296	1238		NM_001296	ENSG00000144648	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
148633	chr21	5757651	5757950	+	0	NA	Intergenic	Intergenic	188596	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
167158	chr3	128062871	128063030	+	0	NA	intron (NM_013336, intron 7 of 11)	intron (NM_013336, intron 7 of 11)	10513	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
136133	chr2	174007131	174007250	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-18090	NR_136175	100128905		NR_136175	ENSG00000260868	LINC01960	-	long intergenic non-protein coding RNA 1960	ncRNA
92274	chr17	8064501	8064930	+	0	NA	Intergenic	Intergenic	23001	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
93960	chr17	21462371	21462530	+	0	NA	Intergenic	Intergenic	86093	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
20524	chr1	198683321	198683780	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	44510	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
217974	chr8	38357051	38357750	+	0	NA	intron (NM_017778, intron 1 of 9)	L2c|LINE|L2	24871	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
166748	chr3	122067201	122067550	+	0	NA	intron (NM_001206925, intron 1 of 5)	intron (NM_001206925, intron 1 of 5)	-10474	NM_006889	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
120079	chr19	42089221	42089480	+	0	NA	3' UTR (NM_002698, exon 14 of 14)	3' UTR (NM_002698, exon 14 of 14)	13184	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
215167	chr7	155656751	155656850	+	0	NA	intron (NM_053043, intron 1 of 17)	intron (NM_053043, intron 1 of 17)	12139	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
168024	chr3	136890021	136890480	+	0	NA	intron (NM_001291999, intron 1 of 3)	LTR12C|LTR|ERV1	28042	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
40687	chr11	64770351	64770450	+	0	NA	exon (NM_001346363, exon 4 of 13)	exon (NM_001346363, exon 4 of 13)	7361	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
30619	chr10	80222201	80222990	+	0	NA	Intergenic	AluSx1|SINE|Alu	14885	NR_038464	439990		NR_038464	ENSG00000237523	LINC00857	HUMT	long intergenic non-protein coding RNA 857	ncRNA
32904	chr10	110171201	110171730	+	0	NA	Intergenic	Intergenic	-19485	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
150880	chr21	44130321	44130780	+	0	NA	intron (NM_005049, intron 20 of 20).2	intron (NM_005049, intron 20 of 20).2	-3133	NR_135220	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
221127	chr8	118120601	118120900	+	0	NA	Intergenic	Intergenic	-8924	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
168942	chr3	152367371	152368380	+	0	NA	intron (NM_001376837, intron 2 of 9)	L1PA7|LINE|L1	-26885	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
199984	chr6	127995121	127995380	+	0	NA	exon (NM_001135648, exon 19 of 31)	exon (NM_001135648, exon 19 of 31)	-32615	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
112407	chr19	6196901	6197850	+	0	NA	Intergenic	Intergenic	61708	NM_001289179	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
74595	chr15	60568801	60570330	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	22961	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
87300	chr16	70116101	70116950	+	0	NA	intron (NM_017990, intron 2 of 18)	FLAM_A|SINE|Alu	2193	NM_017990	55066		NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
35089	chr11	628251	629650	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-1769	NM_021920	6343		NM_021920	ENSG00000070031	SCT	-	secretin	protein-coding
31081	chr10	89203701	89204350	+	0	NA	Intergenic	Intergenic	3292	NM_003956	9023		NM_003956	ENSG00000138135	CH25H	C25H	cholesterol 25-hydroxylase	protein-coding
45017	chr11	117015671	117015830	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSq2|SINE|Alu	82678	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
79907	chr16	1650801	1651000	+	0	NA	intron (NM_020825, intron 6 of 20)	intron (NM_020825, intron 6 of 20)	-27379	NM_144570	90861		NM_144570	ENSG00000206053	JPT2	C16orf34|HN1L|L11	Jupiter microtubule associated homolog 2	protein-coding
206686	chr7	36499671	36499830	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	100370	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
182639	chr5	67127401	67127600	+	0	NA	intron (NM_015183, intron 13 of 27)	L1PA7|LINE|L1	69299	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
221292	chr8	122947401	122947800	+	0	NA	intron (NM_001362797, intron 3 of 4)	L2a|LINE|L2	78172	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
106180	chr18	10527201	10527400	+	0	NA	intron (NM_003826, intron 1 of 11)	MIRb|SINE|MIR	1273	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
26946	chr10	26520551	26521050	+	0	NA	intron (NM_019043, intron 8 of 14)	intron (NM_019043, intron 8 of 14)	58507	NR_134472	101929117		NR_134472		LINC03028	-	long intergenic non-protein coding RNA 3028	ncRNA
13502	chr1	114731551	114732050	+	0	NA	intron (NM_001242891, intron 11 of 20)	MER30|DNA|hAT-Charlie	-15029	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
72885	chr15	40313471	40314280	+	0	NA	Intergenic	Intergenic	-5940	NM_001284297	5330		NM_004573	ENSG00000137841	PLCB2	PLC-beta-2	phospholipase C beta 2	protein-coding
228993	chr9	113575421	113575680	+	0	NA	intron (NM_001351526, intron 2 of 8)	intron (NM_001351526, intron 2 of 8)	-5378	NM_001282922	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
186095	chr5	134116871	134117430	+	0	NA	intron (NR_033449, intron 1 of 7)	intron (NR_033449, intron 1 of 7)	1537	NM_001134851	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
217038	chr8	23255251	23255800	+	0	NA	intron (NM_001363183, intron 3 of 8)	Tigger7|DNA|TcMar-Tigger	8884	NM_001317899	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
161327	chr3	39428051	39428350	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	17146	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
120373	chr19	43626121	43626630	+	0	NA	intron (NM_145296, intron 4 of 8)	intron (NM_145296, intron 4 of 8)	-6746	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
74560	chr15	60529601	60529800	+	0	NA	TTS (NR_120340)	TTS (NR_120340)	50522	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
98929	chr17	48621521	48621800	+	0	NA	3' UTR (NM_024017, exon 2 of 2)	3' UTR (NM_024017, exon 2 of 2)	4698	NM_024017	3219		NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
115809	chr19	16441551	16441900	+	0	NA	intron (NM_021235, intron 3 of 22)	intron (NM_021235, intron 3 of 22)	30245	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
169278	chr3	158099351	158099650	+	0	NA	intron (NM_003030, intron 5 of 5)	intron (NM_003030, intron 5 of 5)	6663	NM_006884	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
825	chr1	1570301	1570500	+	0	NA	intron (NM_014188, intron 1 of 4)	intron (NM_014188, intron 1 of 4)	4463	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
185940	chr5	132954251	132954550	+	0	NA	intron (NM_014423, intron 1 of 20)	LTR1F2|LTR|ERV1	9234	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
122075	chr19	48722271	48722430	+	0	NA	intron (NM_017805, intron 10 of 11)	AluJr|SINE|Alu	-2625	NM_001130915	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
78041	chr15	90034221	90035130	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	27920	NR_036135	100422841		NR_036135	ENSG00000265871	MIR3174	-	microRNA 3174	ncRNA
171729	chr3	197952651	197952750	+	0	NA	intron (NM_000996, intron 3 of 4)	AluSq2|SINE|Alu	2510	NM_001316311	6165		NM_000996	ENSG00000182899	RPL35A	DBA5|L35A|eL33	ribosomal protein L35a	protein-coding
227358	chr9	89476301	89476830	+	0	NA	intron (NM_001371194, intron 1 of 15)	MLT2D|LTR|ERVL	3325	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
50589	chr12	48542371	48542630	+	0	NA	Intergenic	Intergenic	16868	NM_001005203	341568		NM_001005203	ENSG00000284723	OR8S1	-	olfactory receptor family 8 subfamily S member 1	protein-coding
161243	chr3	39232351	39232680	+	0	NA	Intergenic	Intergenic	-39920	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
34243	chr10	130171051	130171580	+	0	NA	intron (NM_001199868, intron 7 of 11)	intron (NM_001199868, intron 7 of 11)	34906	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
95880	chr17	38874551	38874730	+	0	NA	intron (NM_006148, intron 1 of 6)	intron (NM_006148, intron 1 of 6)	4582	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
198320	chr6	100880301	100882100	+	0	NA	5' UTR (NM_022091, exon 1 of 4)	5' UTR (NM_022091, exon 1 of 4)	129	NM_006828	10973		NM_006828	ENSG00000112249	ASCC3	ASC1p200|HELIC1|MRT81|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
54448	chr12	91863721	91863980	+	0	NA	Intergenic	Intergenic	277863	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
56725	chr12	120116311	120117800	+	0	NA	promoter-TSS (NM_001167606)	promoter-TSS (NM_001167606)	-302	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
185696	chr5	131998221	131998680	+	0	NA	intron (NM_001205250, intron 1 of 20)	intron (NM_001205250, intron 1 of 20)	13208	NM_001205247	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
142500	chr20	4740601	4741130	+	0	NA	promoter-TSS (NR_024267)	promoter-TSS (NR_024267)	-197	NR_024268	149830		NM_177549	ENSG00000180259	PRNT	M8	prion locus lncRNA, testis expressed	ncRNA
82796	chr16	21464571	21464730	+	0	NA	intron (NR_027155, intron 12 of 28)	intron (NR_027155, intron 12 of 28)	-30195	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
128143	chr2	48356371	48357430	+	0	NA	intron (NR_164691, intron 2 of 4)	intron (NR_164691, intron 2 of 4)	42218	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
85658	chr16	56202951	56203430	+	0	NA	intron (NM_020988, intron 2 of 8)	intron (NM_020988, intron 2 of 8)	-8665	NR_026889	26077		NR_026889	ENSG00000261439	GNAO1-AS1	DKFZP434H168	GNAO1 antisense RNA 1	ncRNA
134414	chr2	142989371	142989600	+	0	NA	3' UTR (NM_001032998, exon 12 of 12)	3' UTR (NM_001032998, exon 12 of 12)	111821	NM_003937	8942		NM_003937	ENSG00000115919	KYNU	KYNUU|VCRL2	kynureninase	protein-coding
19418	chr1	174181421	174181680	+	0	NA	intron (NM_001366447, intron 1 of 20)	AluY|SINE|Alu	22030	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
218791	chr8	59014401	59014600	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	104647	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
203776	chr7	1232421	1233200	+	0	NA	promoter-TSS (NM_001080461)	promoter-TSS (NM_001080461)	-62	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
218460	chr8	48462671	48462830	+	0	NA	Intergenic	L1PA3|LINE|L1	-88817	NR_105002	101929268		NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
21425	chr1	205322851	205323250	+	0	NA	Intergenic	AluYc3|SINE|Alu	-1305	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
45834	chr11	119372771	119372930	+	0	NA	exon (NM_004205, exon 2 of 13)	exon (NM_004205, exon 2 of 13)	-8642	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
136716	chr2	181170871	181171030	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	47113	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
178627	chr4	152114001	152114780	+	0	NA	Intergenic	L2a|LINE|L2	13572	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
96942	chr17	42178671	42179300	+	0	NA	exon (NM_012285, exon 2 of 17)	exon (NM_012285, exon 2 of 17)	2157	NM_012285	23415		NM_012285	ENSG00000089558	KCNH4	BEC2|ELK1|Kv12.3	potassium voltage-gated channel subfamily H member 4	protein-coding
3566	chr1	16163521	16163830	+	0	NA	Intergenic	Intergenic	-7606	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
152501	chr22	20933121	20933380	+	0	NA	intron (NR_156180, intron 1 of 3)	AluSc8|SINE|Alu	15843	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
196969	chr6	53058151	53058830	+	0	NA	intron (NM_001375400, intron 1 of 14)	intron (NM_001375400, intron 1 of 14)	3334	NM_001375398	22858		NM_014920	ENSG00000112144	CILK1	ECO|EJM10|ICK|LCK2|MRK|hICK	ciliogenesis associated kinase 1	protein-coding
21373	chr1	205171371	205171750	+	0	NA	intron (NM_015375, intron 2 of 12)	intron (NM_015375, intron 2 of 12)	40142	NM_199462	25778		NM_015375	ENSG00000133059	DSTYK	CAKUT1|DustyPK|HDCMD38P|RHDNS1|RIP5|RIPK5|SPG23	dual serine/threonine and tyrosine protein kinase	protein-coding
29751	chr10	72213871	72214230	+	0	NA	intron (NM_001369095, intron 1 of 9)	AluSg|SINE|Alu	1906	NM_001369106	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
204483	chr7	4747571	4747730	+	0	NA	intron (NM_001037165, intron 2 of 8)	AluJr|SINE|Alu	-27973	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
187386	chr5	141876991	141877700	+	0	NA	intron (NM_032420, intron 1 of 4)	CpG	1065	NM_032420	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
205085	chr7	6652651	6653350	+	0	NA	exon (NM_001278559, exon 9 of 9)	exon (NM_001278559, exon 9 of 9)	15682	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
57356	chr12	121778801	121779000	+	0	NA	3' UTR (NM_019034, exon 5 of 5)	3' UTR (NM_019034, exon 5 of 5)	14788	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
67219	chr14	68946221	68946680	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	32852	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
104395	chr17	81043101	81043300	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	8049	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
215239	chr7	156908621	156909230	+	0	NA	Intergenic	(AAC)n|Simple_repeat|Simple_repeat	-15717	NR_146959	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
58497	chr12	132163371	132164480	+	0	NA	Intergenic	Intergenic	19468	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
147700	chr20	62331201	62331400	+	0	NA	intron (NM_005560, intron 28 of 79)	CpG-17980	1257	NR_039915	100616340		NR_039915	ENSG00000284074	MIR4758	-	microRNA 4758	ncRNA
239083	chrY	8490201	8490400	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-147994	NR_138045	100873963		NR_138045		LINC00279	NCRNA00279	long intergenic non-protein coding RNA 279	ncRNA
14232	chr1	143221771	143223000	+	0	NA	Intergenic	Intergenic	200207	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
120046	chr19	41991871	41992530	+	0	NA	intron (NM_001256214, intron 1 of 22)	MSR1|Satellite|Satellite	1267	NM_001256213	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
5891	chr1	26798651	26798980	+	0	NA	non-coding (NR_164652, exon 4 of 4)	non-coding (NR_164652, exon 4 of 4)	10627	NM_001374482	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
19850	chr1	182952571	182953130	+	0	NA	exon (NM_030933, exon 1 of 10)	exon (NM_030933, exon 1 of 10)	316	NM_001345928	81626		NM_030933	ENSG00000157060	SHCBP1L	C1orf14|GE36	SHC binding and spindle associated 1 like	protein-coding
206263	chr7	29335321	29335930	+	0	NA	intron (NM_001293070, intron 2 of 13)	intron (NM_001293070, intron 2 of 13)	-126655	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
201796	chr6	149988521	149989030	+	0	NA	Intergenic	Intergenic	16369	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
17713	chr1	158819051	158819900	+	0	NA	Intergenic	Intergenic	-11876	NM_002432	4332		NM_002432	ENSG00000163563	MNDA	PYHIN3	myeloid cell nuclear differentiation antigen	protein-coding
766	chr1	1513951	1514050	+	0	NA	intron (NM_001170536, intron 1 of 15)	intron (NM_001170536, intron 1 of 15)	1470	NM_001170536	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
97464	chr17	43720151	43721380	+	0	NA	Intergenic	CpG	38026	NM_025237	50964		NM_025237	ENSG00000167941	SOST	CDD|DAND6|SOST1|VBCH	sclerostin	protein-coding
78610	chr15	93675771	93675950	+	0	NA	Intergenic	L1PA2|LINE|L1	-180700	NR_120321	101927153		NR_120321	ENSG00000258476	LINC02207	-	long intergenic non-protein coding RNA 2207	ncRNA
29271	chr10	69179171	69181800	+	0	NA	exon (NM_003171, exon 1 of 15)	exon (NM_003171, exon 1 of 15)	251	NM_001323587	6832		NM_003171	ENSG00000156502	SUPV3L1	SUV3	Suv3 like RNA helicase	protein-coding
54626	chr12	92649621	92650280	+	0	NA	Intergenic	Intergenic	-52893	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
109014	chr18	79715851	79716550	+	0	NA	intron (NM_001318511, intron 8 of 11)	intron (NM_001318511, intron 8 of 11)	34770	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
159868	chr3	16801871	16802030	+	0	NA	Intergenic	Intergenic	-83005	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
184705	chr5	109342601	109342880	+	0	NA	intron (NM_014819, intron 9 of 9)	SVA_F|Retroposon|SVA	-16371	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
18802	chr1	167629871	167631300	+	0	NA	intron (NM_001322923, intron 1 of 5)	CpG	353	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
15996	chr1	151990471	151990630	+	0	NA	intron (NM_002966, intron 1 of 2)	intron (NM_002966, intron 1 of 2)	3309	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
157701	chr22	46372151	46372600	+	0	NA	intron (NM_001378328, intron 25 of 34)	intron (NM_001378328, intron 25 of 34)	36661	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
230895	chr9	129227321	129227730	+	0	NA	Intergenic	Intergenic	-49264	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
138940	chr2	218246901	218247200	+	0	NA	intron (NM_152862, intron 8 of 10)	AluJb|SINE|Alu	-12446	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
103724	chr17	78838451	78838780	+	0	NA	non-coding (NR_169582, exon 2 of 22)	non-coding (NR_169582, exon 2 of 22)	2199	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
190743	chr6	398871	399030	+	0	NA	intron (NR_046000, intron 6 of 9)	intron (NR_046000, intron 6 of 9)	7198	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
14454	chr1	144413501	144414200	+	0	NA	Intergenic	Intergenic	1274	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
3187	chr1	13723001	13723350	+	0	NA	intron (NM_001135610, intron 2 of 7)	L2a|LINE|L2	18320	NM_012231	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
138696	chr2	213100871	213101030	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	49487	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
146196	chr20	48771651	48771950	+	0	NA	intron (NM_020820, intron 1 of 39)	MIR|SINE|MIR	56199	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
8636	chr1	41722051	41722350	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	196722	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
139219	chr2	219289171	219290500	+	0	NA	3' UTR (NM_001199764, exon 23 of 23)	3' UTR (NM_001199764, exon 23 of 23)	4365	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
209217	chr7	75487251	75487350	+	0	NA	Intergenic	MER4D|LTR|ERV1	-1001	NR_160303	100101267		NM_001099415	ENSG00000272391	POM121C	POM121-2	POM121 transmembrane nucleoporin C	protein-coding
175102	chr4	54232251	54232350	+	0	NA	promoter-TSS (NM_001347829)	promoter-TSS (NM_001347829)	-800	NM_001347829	5156		NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
238190	chrX	136911621	136912100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-31080	NR_028476	27316		NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|MRXSG|MRXSH|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein X-linked	protein-coding
226914	chr9	79574901	79575500	+	0	NA	intron (NM_001351547, intron 3 of 18)	MER131|DNA?|DNA?	2023	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
200594	chr6	136610321	136610780	+	0	NA	intron (NM_005923, intron 18 of 29)	intron (NM_005923, intron 18 of 29)	-18564	NR_125858	101928461		NR_125858	ENSG00000234263	MAP3K5-AS1	-	MAP3K5 antisense RNA 1	ncRNA
212296	chr7	123865521	123865880	+	0	NA	intron (NM_012269, intron 2 of 4)	intron (NM_012269, intron 2 of 4)	20531	NM_012269	23553		NM_012269	ENSG00000106302	HYAL4	CSHY|HYAL-4	hyaluronidase 4	protein-coding
61072	chr13	48316501	48317230	+	0	NA	intron (NM_000321, intron 2 of 26)	CpG	13114	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
39376	chr11	59766621	59767480	+	0	NA	intron (NM_004177, intron 1 of 10)	intron (NM_004177, intron 1 of 10)	11674	NM_001178040	6809		NM_004177	ENSG00000166900	STX3	DIAR12|MVID2|RDMVID|STX3A	syntaxin 3	protein-coding
103623	chr17	78738851	78738950	+	0	NA	intron (NM_017456, intron 1 of 12)	L1ME3G|LINE|L1	-1998	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
190644	chr5	181230951	181231250	+	0	NA	intron (NM_201627, intron 2 of 7)	intron (NM_201627, intron 2 of 7)	7819	NR_045218	90933		NM_033549	ENSG00000146063	TRIM41	RINCK	tripartite motif containing 41	protein-coding
150752	chr21	43777571	43777730	+	0	NA	Intergenic	AluJb|SINE|Alu	-1342	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
223272	chr8	143721751	143722050	+	0	NA	intron (NM_139021, intron 13 of 13)	intron (NM_139021, intron 13 of 13)	5551	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
140014	chr2	230988451	230988550	+	0	NA	intron (NR_033879, intron 4 of 5)	intron (NR_033879, intron 4 of 5)	7532	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
114638	chr19	12998701	12999100	+	0	NA	intron (NM_001365902, intron 1 of 10)	intron (NM_001365902, intron 1 of 10)	3425	NM_001365902	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
216611	chr8	22061451	22062000	+	0	NA	intron (NM_001323394, intron 1 of 14)	intron (NM_001323394, intron 1 of 14)	2645	NM_001302816	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
154164	chr22	31292001	31293680	+	0	NA	promoter-TSS (NM_001135911)	promoter-TSS (NM_001135911)	-306	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
83120	chr16	22520401	22520800	+	0	NA	intron (NM_001135865, intron 1 of 6)	AluSx|SINE|Alu	7077	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
161821	chr3	45592971	45595630	+	0	NA	promoter-TSS (NM_014240)	promoter-TSS (NM_014240)	-451	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
10815	chr1	77881221	77881680	+	0	NA	non-coding (NR_103535, exon 3 of 3)	non-coding (NR_103535, exon 3 of 3)	-7065	NM_001172309	91624		NM_144573	ENSG00000162614	NEXN	CMH20|NELIN	nexilin F-actin binding protein	protein-coding
36358	chr11	3927271	3927430	+	0	NA	intron (NM_001382571, intron 1 of 9)	MamRep605|LTR?|LTR?	71288	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
53008	chr12	57519201	57521400	+	0	NA	intron (NM_001195053, intron 1 of 3)	intron (NM_001195053, intron 1 of 3)	217	NM_001195056	1649		NM_004083	ENSG00000175197	DDIT3	AltDDIT3|C/EBPzeta|CEBPZ|CHOP|CHOP-10|CHOP10|GADD153	DNA damage inducible transcript 3	protein-coding
25505	chr10	7192571	7193780	+	0	NA	intron (NM_001029880, intron 15 of 20)	intron (NM_001029880, intron 15 of 20)	-6391	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
188206	chr5	150693101	150693300	+	0	NA	intron (NM_018047, intron 9 of 10)	intron (NM_018047, intron 9 of 10)	7862	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
56652	chr12	119666251	119666550	+	0	NA	Intergenic	MIRb|SINE|MIR	-1733	NM_006253	5564		NM_006253	ENSG00000111725	PRKAB1	AMPK|HAMPKb	protein kinase AMP-activated non-catalytic subunit beta 1	protein-coding
126930	chr2	33272051	33272550	+	0	NA	intron (NM_001166265, intron 11 of 29)	intron (NM_001166265, intron 11 of 29)	137704	NM_001166264	4052		NM_000627	ENSG00000049323	LTBP1	ARCL2E	latent transforming growth factor beta binding protein 1	protein-coding
180552	chr5	14667051	14667400	+	0	NA	intron (NM_138348, intron 1 of 6)	intron (NM_138348, intron 1 of 6)	2507	NM_138348	90268		NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM|IMD107	OTU deubiquitinase with linear linkage specificity	protein-coding
131465	chr2	96389771	96390280	+	0	NA	Intergenic	Intergenic	54259	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
146168	chr20	48734571	48734930	+	0	NA	intron (NM_020820, intron 3 of 39)	intron (NM_020820, intron 3 of 39)	93249	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138668	chr2	212968951	212969050	+	0	NA	Intergenic	Intergenic	-42664	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
102436	chr17	75676121	75676580	+	0	NA	intron (NR_126036, intron 3 of 9)	Charlie1a|DNA|hAT-Charlie	9012	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
89984	chr16	89843671	89843830	+	0	NA	intron (NM_032451, intron 1 of 14)	AluJb|SINE|Alu	15275	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
159437	chr3	13653601	13654150	+	0	NA	intron (NR_027103, intron 1 of 5)	L2a|LINE|L2	3154	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
140387	chr2	233068151	233068250	+	0	NA	intron (NM_001017915, intron 1 of 26).2	AluSp|SINE|Alu	7858	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
107842	chr18	54266421	54266700	+	0	NA	Intergenic	MIRb|SINE|MIR	-2919	NR_147257	11201		NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
163590	chr3	51970651	51972080	+	0	NA	intron (NM_001254753, intron 1 of 2)	intron (NM_001254753, intron 1 of 2)	3265	NM_032750	84836		NM_032750	ENSG00000114779	ABHD14B	CIB|HEL-S-299	abhydrolase domain containing 14B	protein-coding
11247	chr1	88985101	88986330	+	0	NA	intron (NM_019610, intron 1 of 1)	MIRb|SINE|MIR	6914	NM_001162536	494115		NM_019610	ENSG00000213516	RBMXL1	RBM1	RBMX like 1	protein-coding
203749	chr7	1159821	1161380	+	0	NA	promoter-TSS (NM_182491)	promoter-TSS (NM_182491)	-185	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
124071	chr19	55613621	55613880	+	0	NA	exon (NM_001195605, exon 2 of 2)	exon (NM_001195605, exon 2 of 2)	8103	NM_001195605	100507290		NM_001195605	ENSG00000261221	ZNF865	-	zinc finger protein 865	protein-coding
90148	chr17	139151	139450	+	0	NA	TTS (NM_001097610)	TTS (NM_001097610)	1731	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
133747	chr2	127509721	127510180	+	0	NA	intron (NM_017969, intron 2 of 13)	intron (NM_017969, intron 2 of 13)	16539	NM_017969	55677		NM_017969	ENSG00000163166	IWS1	-	interacts with SUPT6H, CTD assembly factor 1	protein-coding
212268	chr7	123529921	123530380	+	0	NA	intron (NM_178827, intron 1 of 12)	AluSx1|SINE|Alu	2798	NM_001321293	154865		NM_178827	ENSG00000164675	IQUB	TRS4	IQ motif and ubiquitin domain containing	protein-coding
71100	chr14	104882121	104882580	+	0	NA	intron (NM_001112726, intron 6 of 18)	intron (NM_001112726, intron 6 of 18)	17036	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
62384	chr13	99259871	99260300	+	0	NA	intron (NR_026644, intron 4 of 8)	L2c|LINE|L2	-1657	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
157639	chr22	46114171	46114780	+	0	NA	TTS (NR_027033)	TTS (NR_027033)	789	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
117926	chr19	33082651	33082750	+	0	NA	intron (NR_135270, intron 1 of 20)	intron (NR_135270, intron 1 of 20)	1519	NM_018025	55094		NM_018025	ENSG00000076650	GPATCH1	ECGP|GPATC1	G-patch domain containing 1	protein-coding
175474	chr4	73068801	73070580	+	0	NA	promoter-TSS (NM_001300729)	promoter-TSS (NM_001300729)	26	NM_173827	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
71468	chr14	105892471	105892750	+	0	NA	Intergenic	Intergenic	-25369	NR_026800	9834		NM_014151	ENSG00000226777	FAM30A	C14orf110|HSPC053|KIAA0125	family with sequence similarity 30 member A	ncRNA
236364	chrX	70755851	70756300	+	0	NA	intron (NM_031276, intron 9 of 29)	L1PA8|LINE|L1	90220	NR_145758	109617015		NR_145758	ENSG00000280704	SNORD3E	-	small nucleolar RNA, C/D box 3E	snoRNA
235836	chrX	49761551	49761880	+	0	NA	Intergenic	Intergenic	-65731	NM_003785	8712		NM_003785	ENSG00000068985	PAGE1	AL5|CT16.3|GAGE-9|GAGEB1|PAGE-1	PAGE family member 1	protein-coding
144889	chr20	36929001	36929500	+	0	NA	intron (NM_001363733, intron 5 of 15)	intron (NM_001363733, intron 5 of 15)	22458	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
36196	chr11	3412401	3412800	+	0	NA	Intergenic	Intergenic	-20685	NR_044999	10821		NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
193481	chr6	30542401	30543150	+	0	NA	3' UTR (NM_005275, exon 12 of 12)	3' UTR (NM_005275, exon 12 of 12)	-13934	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
90841	chr17	2342451	2342550	+	0	NA	intron (NM_001346700, intron 1 of 22)	L1ME3A|LINE|L1	4999	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
235511	chrX	47188921	47189180	+	0	NA	Intergenic	L1M5|LINE|L1	-1797	NM_153280	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
88169	chr16	81708401	81708800	+	0	NA	intron (NM_030629, intron 20 of 20)	intron (NM_030629, intron 20 of 20)	43246	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
92754	chr17	14785001	14785200	+	0	NA	Intergenic	MER52A|LTR|ERV1	-229705	NR_135638	101928475		NR_135638	ENSG00000232058	LOC101928475	-	uncharacterized LOC101928475	ncRNA
154505	chr22	35699121	35699430	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-18597	NM_030642	80831		NM_030642	ENSG00000128313	APOL5	APOL-V|APOLV	apolipoprotein L5	protein-coding
225253	chr9	34328471	34331030	+	0	NA	promoter-TSS (NM_194313)	promoter-TSS (NM_194313)	181	NM_001161	318		NM_001161	ENSG00000164978	NUDT2	APAH1|IDDPN	nudix hydrolase 2	protein-coding
81013	chr16	4205921	4206180	+	0	NA	intron (NM_001098814, intron 1 of 5)	intron (NM_001098814, intron 1 of 5)	36030	NM_001098814	6345		NM_001098814	ENSG00000185739	SRL	SAR	sarcalumenin	protein-coding
152386	chr22	20524071	20525150	+	0	NA	intron (NM_001293237, intron 1 of 16)	AluSg|SINE|Alu	16563	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
51540	chr12	52358601	52359250	+	0	NA	Intergenic	Intergenic	5697	NM_001300810	3891		NM_002283	ENSG00000135443	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
113175	chr19	8398001	8398600	+	0	NA	intron (NM_004218, intron 1 of 4)	intron (NM_004218, intron 1 of 4)	-7609	NR_038237	100507567		NR_038237	ENSG00000269386	RAB11B-AS1	MIR4999HG	RAB11B antisense RNA 1	ncRNA
239389	chrY	21249381	21249950	+	0	NA	Intergenic	HERV1_LTRe|LTR|ERV1	136695	NM_001282471	100533178		NM_001282471		PRORY	CYorf17	PRORY Y-linked lncRNA	ncRNA
109387	chr19	657571	657730	+	0	NA	intron (NM_194460, intron 1 of 8)	intron (NM_194460, intron 1 of 8)	5564	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
57198	chr12	121470471	121471100	+	0	NA	intron (NM_001005366, intron 12 of 22)	intron (NM_001005366, intron 12 of 22)	-26433	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
131572	chr2	96818921	96819530	+	0	NA	intron (NM_199078, intron 1 of 6)	intron (NM_199078, intron 1 of 6)	2957	NM_017623	26505		NM_017623	ENSG00000168763	CNNM3	ACDP3	cyclin and CBS domain divalent metal cation transport mediator 3	protein-coding
187501	chr5	142349121	142349580	+	0	NA	intron (NR_120664, intron 2 of 3)	L1MA5|LINE|L1	24057	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
235497	chrX	47128971	47130150	+	0	NA	Intergenic	Intergenic	15142	NM_001135998	54539		NM_019056	ENSG00000147123	NDUFB11	CI-ESSS|ESSS|MC1DN30|NP17.3|Np15|P17.3	NADH:ubiquinone oxidoreductase subunit B11	protein-coding
105499	chr17	83094451	83094830	+	0	NA	3' UTR (NM_001363853, exon 5 of 5)	3' UTR (NM_001363853, exon 5 of 5)	13494	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
201768	chr6	149951371	149952030	+	0	NA	Intergenic	Intergenic	9686	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
95133	chr17	35045051	35045780	+	0	NA	intron (NR_037713, intron 1 of 6)	AluSz6|SINE|Alu	18292	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
119816	chr19	41347701	41348350	+	0	NA	intron (NM_000660, intron 2 of 6)	AluSc|SINE|Alu	5897	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
197021	chr6	53331251	53331750	+	0	NA	intron (NM_001242830, intron 1 of 6)	Tigger3b|DNA|TcMar-Tigger	6117	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
159896	chr3	16898371	16898530	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	13495	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
74829	chr15	63494901	63496100	+	0	NA	Intergenic	MIR|SINE|MIR	-9011	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
99237	chr17	49691271	49691630	+	0	NA	Intergenic	Intergenic	-13287	NM_001007226	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
49761	chr12	31768051	31768150	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	24198	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
209030	chr7	74465071	74465230	+	0	NA	intron (NM_001199207, intron 1 of 26)	intron (NM_001199207, intron 1 of 26)	11244	NM_005685	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
119531	chr19	40573971	40574730	+	0	NA	intron (NM_020971, intron 35 of 35)	intron (NM_020971, intron 35 of 35)	-2523	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
57405	chr12	121829071	121829600	+	0	NA	intron (NM_001353345, intron 16 of 16)	L2b|LINE|L2	25326	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
1754	chr1	6010521	6010780	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	-15683	NM_172130	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
57891	chr12	123438971	123439580	+	0	NA	Intergenic	AluSx|SINE|Alu	-2542	NM_145058	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
102897	chr17	76537551	76538730	+	0	NA	promoter-TSS (NM_134268)	promoter-TSS (NM_134268)	-431	NM_134268	114757		NM_134268	ENSG00000161544	CYGB	HGB|NOD|STAP	cytoglobin	protein-coding
44704	chr11	111564751	111565400	+	0	NA	Intergenic	AluSx|SINE|Alu	24355	NM_178834	143903		NM_178834	ENSG00000204381	LAYN	-	layilin	protein-coding
232899	chr9	136853301	136853830	+	0	NA	exon (NM_206920, exon 4 of 27)	exon (NM_206920, exon 4 of 27)	1219	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
173727	chr4	15962901	15964400	+	0	NA	promoter-TSS (NM_031950)	promoter-TSS (NM_031950)	-475	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
13223	chr1	112664771	112665080	+	0	NA	intron (NM_006135, intron 7 of 9)	AluSq2|SINE|Alu	-9387	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
108170	chr18	62881701	62881900	+	0	NA	intron (NM_194449, intron 4 of 16)	intron (NM_194449, intron 4 of 16)	166259	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
78935	chr15	101257971	101258650	+	0	NA	Intergenic	Intergenic	-6262	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
67707	chr14	73312451	73312950	+	0	NA	intron (NM_003744, intron 5 of 11)	AluJb|SINE|Alu	-66699	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
143116	chr20	23417021	23417280	+	0	NA	intron (NR_104266, intron 1 of 10)	AluSx1|SINE|Alu	4338	NR_104266	63908		NM_022080	ENSG00000125814	NAPB	DEE107|SNAP-BETA|SNAPB	NSF attachment protein beta	protein-coding
159341	chr3	13079051	13079150	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	-5671	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
204158	chr7	2405421	2406500	+	0	NA	intron (NM_018641, intron 1 of 1)	intron (NM_018641, intron 1 of 1)	2349	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
208676	chr7	73221701	73221900	+	0	NA	intron (NR_003186, intron 1 of 7)	AluJb|SINE|Alu	1161	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
92046	chr17	7498301	7498800	+	0	NA	intron (NM_000937, intron 8 of 29)	L2c|LINE|L2	14184	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
180756	chr5	32140801	32141200	+	0	NA	intron (NM_022130, intron 2 of 3)	AluSz6|SINE|Alu	33319	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
63729	chr14	21214421	21214780	+	0	NA	intron (NM_001077443, intron 4 of 7)	AluJb|SINE|Alu	-7700	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
21863	chr1	207555801	207556200	+	0	NA	intron (NM_000651, intron 19 of 46)	MLT1C|LTR|ERVL-MaLR	59843	NM_000651	1378		NM_000573	ENSG00000203710	CR1	C3BR|C4BR|CD35|KN	complement C3b/C4b receptor 1 (Knops blood group)	protein-coding
179017	chr4	164956801	164957280	+	0	NA	promoter-TSS (NR_160935)	promoter-TSS (NR_160935)	92	NR_160935	152756		NM_153027	ENSG00000250486	FAM218A	C4orf39|TRIM61-AS1	family with sequence similarity 218 member A	ncRNA
223994	chr9	2116171	2116430	+	0	NA	intron (NM_003070, intron 25 of 33)	intron (NM_003070, intron 25 of 33)	-41362	NM_001289398	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
163329	chr3	50374971	50375130	+	0	NA	intron (NM_006030, intron 21 of 37)	intron (NM_006030, intron 21 of 37)	9687	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
130574	chr2	85785001	85785500	+	0	NA	intron (NM_032827, intron 2 of 2)	intron (NM_032827, intron 2 of 2)	-1573	NR_106719	102466516		NR_106719	ENSG00000278783	MIR6071	hsa-mir-6071	microRNA 6071	ncRNA
91154	chr17	3766351	3766450	+	0	NA	intron (NM_002208, intron 2 of 30)	MLT1D|LTR|ERVL-MaLR	34788	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
149875	chr21	35528251	35529750	+	0	NA	intron (NR_073512, intron 1 of 2)	intron (NR_073512, intron 1 of 2)	51764	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
72700	chr15	38609251	38609780	+	0	NA	Intergenic	Intergenic	-44701	NM_005739	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
96440	chr17	40193401	40193600	+	0	NA	promoter-TSS (NR_106927)	promoter-TSS (NR_106927)	-97	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
213691	chr7	140167351	140167530	+	0	NA	intron (NM_030647, intron 1 of 19)	L1MC4a|LINE|L1	9543	NM_030647	80853		NM_030647	ENSG00000006459	KDM7A	JHDM1D	lysine demethylase 7A	protein-coding
115966	chr19	16896401	16898300	+	0	NA	promoter-TSS (NR_147452)	promoter-TSS (NR_147452)	-403	NR_147452	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
149340	chr21	29059071	29059230	+	0	NA	intron (NM_006585, intron 14 of 14)	intron (NM_006585, intron 14 of 14)	14498	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
121926	chr19	48445111	48446900	+	0	NA	promoter-TSS (NM_031485)	promoter-TSS (NM_031485)	22	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
6842	chr1	31039051	31039450	+	0	NA	intron (NM_014676, intron 2 of 21)	AluY|SINE|Alu	26467	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
49296	chr12	21296671	21297150	+	0	NA	intron (NM_134431, intron 10 of 15)	intron (NM_134431, intron 10 of 15)	38007	NM_021094	6579		NM_005075	ENSG00000084453	SLCO1A2	OATP|OATP-A|OATP1A2|SLC21A3	solute carrier organic anion transporter family member 1A2	protein-coding
234840	chrX	24477421	24477880	+	0	NA	intron (NM_001142386, intron 1 of 11)	intron (NM_001142386, intron 1 of 11)	12364	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
22042	chr1	210407221	210407580	+	0	NA	intron (NM_018194, intron 6 of 11).2	intron (NM_018194, intron 6 of 11).2	78034	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
234375	chrX	15782001	15783350	+	0	NA	non-coding (NR_160544, exon 12 of 12)	non-coding (NR_160544, exon 12 of 12)	4914	NR_002725	8551		NR_002725	ENSG00000281371	INE2	NCRNA00011	inactivation escape 2	ncRNA
1305	chr1	2391101	2393380	+	0	NA	promoter-TSS (NM_024848)	promoter-TSS (NM_024848)	399	NM_007033	11079		NM_007033	ENSG00000157916	RER1	-	retention in endoplasmic reticulum sorting receptor 1	protein-coding
220788	chr8	102635421	102636250	+	0	NA	Intergenic	MER4A1|LTR|ERV1	18129	NR_103759	7071		NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	KLF transcription factor 10	protein-coding
85857	chr16	57026001	57027200	+	0	NA	non-coding (NR_169515, exon 6 of 48)	non-coding (NR_169515, exon 6 of 48)	37043	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
181554	chr5	43126021	43126430	+	0	NA	intron (NM_001330710, intron 3 of 5)	L1MD2|LINE|L1	4660	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
176063	chr4	82433801	82434000	+	0	NA	intron (NM_021204, intron 1 of 5)	intron (NM_021204, intron 1 of 5)	3310	NM_001292017	58478		NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145|mtnC	enolase-phosphatase 1	protein-coding
209854	chr7	90312851	90312950	+	0	NA	Intergenic	Intergenic	8083	NM_001384237	107986818		NM_001384237	ENSG00000283267	FAM237B	-	family with sequence similarity 237 member B	protein-coding
95705	chr17	38508651	38508950	+	0	NA	intron (NM_001199417, intron 23 of 23).2	L2c|LINE|L2	80336	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
73645	chr15	44682801	44683650	+	0	NA	Intergenic	L1PA7|LINE|L1	-6337	NM_001145112	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
87471	chr16	71622021	71622330	+	0	NA	Intergenic	LTR52|LTR|ERVL	-4009	NM_001271329	91862		NM_052858	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
131776	chr2	98482271	98482750	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	36500	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
48663	chr12	10453171	10453450	+	0	NA	promoter-TSS (NM_002259)	promoter-TSS (NM_002259)	67	NM_002259	3821		NM_002259	ENSG00000134545	KLRC1	CD159A|NKG2|NKG2A	killer cell lectin like receptor C1	protein-coding
169136	chr3	155995701	155995930	+	0	NA	Intergenic	MER90|LTR|ERV1	-124733	NM_001308217	7881		NM_003471	ENSG00000169282	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel subfamily A regulatory beta subunit 1	protein-coding
171538	chr3	196742821	196743980	+	0	NA	intron (NM_002577, intron 1 of 14)	MIRb|SINE|MIR	3543	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
123144	chr19	52138751	52140780	+	0	NA	non-coding (NR_135823, exon 1 of 5)	non-coding (NR_135823, exon 1 of 5)	173	NR_135823	90317		NM_178523	ENSG00000204611	ZNF616	-	zinc finger protein 616	protein-coding
80383	chr16	2539251	2539550	+	0	NA	intron (NM_031268, intron 1 of 10)	intron (NM_031268, intron 1 of 10)	1379	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
196806	chr6	46013101	46013300	+	0	NA	intron (NM_001370649, intron 1 of 5)	intron (NM_001370649, intron 1 of 5)	2660	NM_016929	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
22554	chr1	222508801	222509000	+	0	NA	Intergenic	Intergenic	39204	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
77396	chr15	83068271	83068450	+	0	NA	TTS (NR_039740)	TTS (NR_039740)	1025	NR_039740	100616404		NR_039740	ENSG00000263643	MIR4515	mir-4515	microRNA 4515	ncRNA
78457	chr15	92878771	92879350	+	0	NA	Intergenic	Intergenic	-3783	NR_037600	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
100875	chr17	64326201	64326800	+	0	NA	intron (NM_000442, intron 15 of 15)	intron (NM_000442, intron 15 of 15)	-63240	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
86081	chr16	57628301	57629030	+	0	NA	promoter-TSS (NM_201525)	promoter-TSS (NM_201525)	35	NM_001370454	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
195061	chr6	35502571	35502930	+	0	NA	intron (NM_001289395, intron 12 of 13)	AluSx1|SINE|Alu	-5671	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
100340	chr17	59892051	59893910	+	0	NA	promoter-TSS (NM_016261)	promoter-TSS (NM_016261)	-35	NM_001193613	51174		NM_016261	ENSG00000108423	TUBD1	TUBD	tubulin delta 1	protein-coding
229336	chr9	120905151	120906900	+	0	NA	intron (NM_005658, intron 7 of 7)	intron (NM_005658, intron 7 of 7)	8547	NM_001190947	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
148082	chr20	63293471	63293630	+	0	NA	intron (NM_020882, intron 1 of 35)	intron (NM_020882, intron 1 of 35)	364	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
55764	chr12	108560601	108561800	+	0	NA	promoter-TSS (NM_001320042)	promoter-TSS (NM_001320042)	-27	NM_014706	9733		NM_014706	ENSG00000075856	SART3	DSAP1|P100|RP11-13G14|TIP110|p110|p110(nrb)	spliceosome associated factor 3, U4/U6 recycling protein	protein-coding
215148	chr7	155466651	155467230	+	0	NA	Intergenic	CpG	8811	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
143733	chr20	32333051	32333800	+	0	NA	3' UTR (NM_004798, exon 9 of 9)	3' UTR (NM_004798, exon 9 of 9)	-24906	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
169614	chr3	171256401	171256600	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-149741	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
189892	chr5	177336121	177336400	+	0	NA	intron (NM_006816, intron 6 of 7)	L2a|LINE|L2	15408	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
77851	chr15	88660171	88660330	+	0	NA	Intergenic	Intergenic	21234	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
166767	chr3	122382751	122383500	+	0	NA	intron (NM_001017928, intron 1 of 4)	intron (NM_001017928, intron 1 of 4)	106	NM_001308326	131076		NM_001017928	ENSG00000160124	MIX23	CCDC58	mitochondrial matrix import factor 23	protein-coding
176369	chr4	88539301	88539850	+	0	NA	intron (NM_001375482, intron 1 of 24)	L1PA6|LINE|L1	15732	NM_001375483	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
167483	chr3	129160251	129162210	+	0	NA	promoter-TSS (NM_001199469)	promoter-TSS (NM_001199469)	0	NM_001204890	100534599		NM_001204890	ENSG00000261796	ISY1-RAB43	ISY1	ISY1-RAB43 readthrough	protein-coding
235479	chrX	46662701	46662900	+	0	NA	intron (NM_001257291, intron 5 of 16)	intron (NM_001257291, intron 5 of 16)	89035	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
196587	chr6	44186001	44186400	+	0	NA	Intergenic	Intergenic	27380	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105477	chr17	83069921	83070430	+	0	NA	Intergenic	Intergenic	-9434	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
156175	chr22	40222621	40222950	+	0	NA	intron (NM_015088, intron 1 of 20)	AluJb|SINE|Alu	44860	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
201592	chr6	149344751	149345250	+	0	NA	intron (NM_001369506, intron 2 of 7)	intron (NM_001369506, intron 2 of 7)	26700	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
144253	chr20	34528201	34528400	+	0	NA	intron (NR_168139, intron 3 of 4)	AluYa5|SINE|Alu	11878	NM_001382367	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
219056	chr8	65797271	65797680	+	0	NA	intron (NM_001242318, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	-8418	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
75477	chr15	66169071	66169250	+	0	NA	intron (NR_169558, intron 1 of 22)	intron (NR_169558, intron 1 of 22)	84590	NR_169556	84465		NM_032445	ENSG00000157890	MEGF11	-	multiple EGF like domains 11	protein-coding
178920	chr4	158803671	158804030	+	0	NA	intron (NM_020840, intron 1 of 16)	intron (NM_020840, intron 1 of 16)	-1989	NM_001323916	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
77158	chr15	79970651	79971830	+	0	NA	promoter-TSS (NM_001114735)	promoter-TSS (NM_001114735)	-44	NM_004049	597		NM_004049	ENSG00000140379	BCL2A1	ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1	BCL2 related protein A1	protein-coding
151754	chr22	17841921	17842880	+	0	NA	intron (NM_015241, intron 19 of 31)	intron (NM_015241, intron 19 of 31)	64486	NM_001136004	57553		NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
88877	chr16	87704021	87704450	+	0	NA	Intergenic	Intergenic	61751	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
48009	chr12	6929271	6930080	+	0	NA	intron (NM_001940, intron 1 of 9)	intron (NM_001940, intron 1 of 9)	1716	NM_001940	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
191642	chr6	13331521	13332080	+	0	NA	Intergenic	Intergenic	-3217	NM_001143964	51256		NM_016495	ENSG00000145979	TBC1D7	MGCPH|PIG51|TBC7	TBC1 domain family member 7	protein-coding
182382	chr5	61161601	61163080	+	0	NA	promoter-TSS (NR_109908)	promoter-TSS (NR_109908)	24	NR_109908	101928630		NR_109908		SMIM15-AS1	CTC-436P18.1	SMIM15 antisense RNA 1	ncRNA
179230	chr4	174120551	174120730	+	0	NA	intron (NR_125896, intron 1 of 4)	intron (NR_125896, intron 1 of 4)	99758	NR_125896	101928509		NR_125896	ENSG00000248174	LINC02268	-	long intergenic non-protein coding RNA 2268	ncRNA
152628	chr22	21440771	21441780	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	23904	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
141012	chr2	238162201	238162600	+	0	NA	intron (NM_001291832, intron 2 of 7)	intron (NM_001291832, intron 2 of 7)	3430	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
102879	chr17	76514971	76516450	+	0	NA	Intergenic	Intergenic	-11876	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
232877	chr9	136830321	136831180	+	0	NA	promoter-TSS (NR_036251)	promoter-TSS (NR_036251)	-207	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
65486	chr14	51871601	51872430	+	0	NA	intron (NM_001243774, intron 1 of 2)	MLT1I|LTR|ERVL-MaLR	11403	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
142557	chr20	5168401	5168600	+	0	NA	intron (NM_003818, intron 1 of 12)	intron (NM_003818, intron 1 of 12)	41492	NM_003818	8760		NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
3294	chr1	15340401	15341000	+	0	NA	intron (NR_148918, intron 1 of 1)	MLT1H|LTR|ERVL-MaLR	3183	NR_148918	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
93462	chr17	18782541	18782950	+	0	NA	intron (NM_001316919, intron 1 of 6)	MER41A|LTR|ERV1	1431	NM_001316919	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
172894	chr4	3463751	3464700	+	0	NA	intron (NM_001363811, intron 2 of 7)	intron (NM_001363811, intron 2 of 7)	919	NM_001164673	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
163023	chr3	49802201	49804230	+	0	NA	promoter-TSS (NM_001366281)	promoter-TSS (NM_001366281)	-46	NM_203370	389119		NM_203370	ENSG00000185614	INKA1	C3orf54|FAM212A|INCA	inka box actin regulator 1	protein-coding
60578	chr13	41848471	41848630	+	0	NA	intron (NM_015058, intron 12 of 44)	THE1D|LTR|ERVL-MaLR	112535	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
40181	chr11	62898301	62898900	+	0	NA	Intergenic	AluSx|SINE|Alu	16901	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
223129	chr8	143484701	143485000	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	21398	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
166510	chr3	114327421	114328000	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-11141	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
143634	chr20	31834421	31834880	+	0	NA	TTS (NM_033118)	TTS (NM_033118)	10954	NM_004118	2307		NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
169713	chr3	172131971	172133080	+	0	NA	intron (NM_022763, intron 2 of 25)	AluSx1|SINE|Alu	91994	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
151903	chr22	18920101	18920300	+	0	NA	intron (NM_016335, intron 8 of 13).2	intron (NM_016335, intron 8 of 13).2	13880	NM_005675	8214		NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
222487	chr8	140437671	140437830	+	0	NA	intron (NR_164662, intron 3 of 22)	intron (NR_164662, intron 3 of 22)	19994	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
68760	chr14	91058421	91058680	+	0	NA	intron (NM_001322235, intron 1 of 17)	intron (NM_001322235, intron 1 of 17)	1574	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
47125	chr12	697501	697780	+	0	NA	Intergenic	Intergenic	-34195	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
150556	chr21	43090851	43091450	+	0	NA	Intergenic	Intergenic	-14207	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
112450	chr19	6377371	6377530	+	0	NA	Intergenic	AluSz|SINE|Alu	-1534	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
8030	chr1	38048221	38048480	+	0	NA	intron (NR_168386, intron 1 of 4)	intron (NR_168386, intron 1 of 4)	1216	NR_168387	105378653		NR_168386		MIR3659HG	-	MIR3659 host gene	ncRNA
158202	chr22	50250351	50251700	+	0	NA	exon (NM_032019, exon 1 of 20)	exon (NM_032019, exon 1 of 20)	240	NM_032019	83933		NM_032019	ENSG00000100429	HDAC10	HD10	histone deacetylase 10	protein-coding
179384	chr4	183602671	183602850	+	0	NA	Intergenic	Intergenic	56425	NM_152682	201965		NM_152682	ENSG00000182552	RWDD4	FAM28A|RWDD4A	RWD domain containing 4	protein-coding
40888	chr11	65124121	65124380	+	0	NA	intron (NR_037568, intron 1 of 2)	MER65A|LTR|ERV1	1929	NR_037568	740		NM_004927	ENSG00000149792	MRPL49	C11orf4|L49mt|MRP-L49|NOF|NOF1|mL49	mitochondrial ribosomal protein L49	protein-coding
61963	chr13	79401571	79402400	+	0	NA	intron (NM_022118, intron 1 of 20)	intron (NM_022118, intron 1 of 20)	4236	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
23466	chr1	228610001	228611430	+	0	NA	promoter-TSS (NR_023363)	promoter-TSS (NR_023363)	-329	NR_023378	100169767		NR_023378	ENSG00000202257	RNA5S16	RN5S16	RNA, 5S ribosomal 16	rRNA
185647	chr5	131541621	131542080	+	0	NA	intron (NM_016340, intron 6 of 27)	Charlie7a|DNA|hAT-Charlie	93379	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
15581	chr1	150573021	150573400	+	0	NA	intron (NR_104133, intron 2 of 3)	intron (NR_104133, intron 2 of 3)	1342	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
151653	chr22	16955721	16955980	+	0	NA	Intergenic	Intergenic	52372	NM_001037814	128954		NM_001037814	ENSG00000215568	GAB4	-	GRB2 associated binding protein family member 4	protein-coding
11589	chr1	91558701	91558900	+	0	NA	Intergenic	L1MA5|LINE|L1	57692	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
34284	chr10	131917751	131918300	+	0	NA	intron (NM_001291310, intron 3 of 9)	intron (NM_001291310, intron 3 of 9)	17017	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
225889	chr9	39680801	39681430	+	0	NA	Intergenic	L1P3|LINE|L1	129044	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
115998	chr19	17107871	17108480	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	15940	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
68795	chr14	91231601	91232280	+	0	NA	TTS (NM_001348437)	TTS (NM_001348437)	12764	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
155918	chr22	39597251	39597350	+	0	NA	intron (NM_001003406, intron 1 of 35)	intron (NM_001003406, intron 1 of 35)	26547	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
76692	chr15	75741001	75741400	+	0	NA	Intergenic	AluY|SINE|Alu	-1123	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
112044	chr19	5134671	5135030	+	0	NA	intron (NM_015015, intron 14 of 22)	intron (NM_015015, intron 14 of 22)	165737	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
43305	chr11	76210331	76211450	+	0	NA	Intergenic	CpG-4722	-4388	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
217292	chr8	27369801	27370000	+	0	NA	intron (NM_173174, intron 6 of 35)	AluSx|SINE|Alu	44336	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
16155	chr1	153708771	153708930	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-19057	NR_107050	102466879		NR_107050	ENSG00000274940	MIR8083	hsa-mir-8083	microRNA 8083	ncRNA
226563	chr9	72371751	72372050	+	0	NA	Intergenic	AluSz|SINE|Alu	-6692	NM_001102420	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
41853	chr11	67160221	67160700	+	0	NA	intron (NM_012308, intron 2 of 20)	intron (NM_012308, intron 2 of 20)	41197	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
159525	chr3	14427701	14428400	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	25444	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
82261	chr16	15142151	15142850	+	0	NA	Intergenic	Intergenic	-5541	NR_123721	105369154		NR_123721	ENSG00000270580	PKD1P6-NPIPP1	-	PKD1P6-NPIPP1 readthrough	pseudo
229760	chr9	125186701	125187400	+	0	NA	intron (NM_001123369, intron 1 of 5)	AluSx1|SINE|Alu	2753	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
201747	chr6	149927501	149927900	+	0	NA	Intergenic	L1PA6|LINE|L1	-4579	NR_130110	353091		NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
131749	chr2	98457121	98457430	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	11265	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
229491	chr9	122218151	122218250	+	0	NA	intron (NM_199160, intron 4 of 8)	intron (NM_199160, intron 4 of 8)	3540	NM_001242335	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
36013	chr11	2903951	2904050	+	0	NA	promoter-TSS (NR_169304)	promoter-TSS (NR_169304)	-425	NR_169304	5003		NM_007105	ENSG00000254827	SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	SLC22A18 antisense RNA	ncRNA
211358	chr7	104981201	104981930	+	0	NA	TTS (NR_039981)	TTS (NR_039981)	9600	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
99551	chr17	50380171	50381530	+	0	NA	TTS (NM_018509)	TTS (NM_018509)	7621	NM_152463	146956		NM_152463	ENSG00000154920	EME1	MMS4L|SLX2A	essential meiotic structure-specific endonuclease 1	protein-coding
83577	chr16	28145251	28145350	+	0	NA	intron (NM_001270940, intron 10 of 24)	intron (NM_001270940, intron 10 of 24)	66665	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
30311	chr10	75396201	75396400	+	0	NA	intron (NR_120651, intron 1 of 3)	CpG	-5228	NR_024421	100131213		NR_024421	ENSG00000237149	ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	ncRNA
221038	chr8	116715701	116716080	+	0	NA	intron (NM_003756, intron 2 of 7)	intron (NM_003756, intron 2 of 7)	39933	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
51815	chr12	53439271	53439430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2299	NM_001005354	54458		NM_018457	ENSG00000205352	PRR13	TXR1	proline rich 13	protein-coding
203465	chr7	470421	470980	+	0	NA	Intergenic	Intergenic	-38899	NR_165236	112267991		NR_165236		LOC112267991	-	uncharacterized LOC112267991	ncRNA
66427	chr14	61524151	61524580	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	45829	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
13706	chr1	116764071	116765450	+	0	NA	intron (NM_001328609, intron 4 of 4)	intron (NM_001328609, intron 4 of 4)	10330	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
17504	chr1	156739771	156739930	+	0	NA	intron (NM_024540, intron 1 of 5)	AluSx|SINE|Alu	1238	NM_024540	79590		NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24|uL24m	mitochondrial ribosomal protein L24	protein-coding
120097	chr19	42131351	42131450	+	0	NA	intron (NM_001247994, intron 1 of 13)	intron (NM_001247994, intron 1 of 13)	1046	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
90212	chr17	494001	494400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-48260	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
77026	chr15	78726871	78727430	+	0	NA	Intergenic	Intergenic	-24887	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
4474	chr1	21428101	21428600	+	0	NA	Intergenic	CpG	-11787	NM_001377492	84224		NM_032264	ENSG00000142794	NBPF3	AE2	NBPF member 3	protein-coding
81196	chr16	4487921	4489500	+	0	NA	5' UTR (NM_001286269, exon 2 of 7)	5' UTR (NM_001286269, exon 2 of 7)	-7109	NM_001286270	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
229517	chr9	122498801	122499100	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-11852	NM_054107	26740		NM_054107	ENSG00000197233	OR1J2	HG152|HSA5|OR1J3|OR1J5|OR9-19|OST044	olfactory receptor family 1 subfamily J member 2	protein-coding
49485	chr12	25223921	25224400	+	0	NA	intron (NM_033360, intron 4 of 5)	Tigger3b|DNA|TcMar-Tigger	26769	NM_033360	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
198599	chr6	107715521	107716300	+	0	NA	intron (NM_001286409, intron 2 of 3)	intron (NM_001286409, intron 2 of 3)	16240	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
94835	chr17	31438401	31438800	+	0	NA	intron (NM_032932, intron 3 of 14)	intron (NM_032932, intron 3 of 14)	46925	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
82592	chr16	18803001	18803200	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1551	NM_015161	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
214543	chr7	150523171	150523530	+	0	NA	Intergenic	MER11C|LTR|ERVK	8478	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
28653	chr10	59888001	59888780	+	0	NA	intron (NM_005436, intron 1 of 8)	intron (NM_005436, intron 1 of 8)	18166	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
192463	chr6	24920821	24921680	+	0	NA	intron (NM_001286446, intron 1 of 13)	AluSz|SINE|Alu	-10202	NM_014722	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
220294	chr8	98045071	98046580	+	0	NA	promoter-TSS (NM_000989)	promoter-TSS (NM_000989)	-280	NM_000989	6156		NM_000989	ENSG00000156482	RPL30	L30|eL30	ribosomal protein L30	protein-coding
184936	chr5	112984171	112984530	+	0	NA	intron (NR_038352, intron 1 of 8)	intron (NR_038352, intron 1 of 8)	7552	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
147757	chr20	62474151	62474450	+	0	NA	intron (NM_080473, intron 2 of 6)	CpG	1695	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
232371	chr9	135899001	135899600	+	0	NA	intron (NM_015447, intron 1 of 16)	intron (NM_015447, intron 1 of 16)	8246	NM_015447	157922		NM_015447	ENSG00000130559	CAMSAP1	CDCBM12	calmodulin regulated spectrin associated protein 1	protein-coding
210025	chr7	94003771	94004800	+	0	NA	promoter-TSS (NR_133909)	promoter-TSS (NR_133909)	70	NR_133909	10282		NM_005868	ENSG00000105829	BET1	HBET1|MDRP	Bet1 golgi vesicular membrane trafficking protein	protein-coding
212247	chr7	121394501	121394900	+	0	NA	intron (NM_001040020, intron 1 of 9)	intron (NM_001040020, intron 1 of 9)	1608	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
84882	chr16	31187801	31188270	+	0	NA	intron (NM_001170937, intron 7 of 14)	intron (NM_001170937, intron 7 of 14)	7896	NM_004960	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
203572	chr7	908411	909850	+	0	NA	intron (NM_006869, intron 4 of 10)	CpG	11759	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
133768	chr2	127647571	127647730	+	0	NA	intron (NM_001161417, intron 1 of 1)	intron (NM_001161417, intron 1 of 1)	603	NM_001256542	55679		NM_017980	ENSG00000072163	LIMS2	LGMD2W|MDRCMTT|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
42564	chr11	71911451	71911860	+	0	NA	intron (NM_001375847, intron 5 of 5)	HERVE-int|LTR|ERV1	16804	NM_001375848	100133315		NM_001375847	ENSG00000254469	XNDC1N	-	XRCC1 N-terminal domain containing 1, N-terminal like	protein-coding
98205	chr17	46131501	46131850	+	0	NA	intron (NM_015443, intron 2 of 14).2	L2a|LINE|L2	61107	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
136512	chr2	177244171	177244800	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	11525	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
20216	chr1	193141771	193142130	+	0	NA	exon (NM_024529, exon 7 of 17)	exon (NM_024529, exon 7 of 17)	5447	NR_031691	100302163		NR_031691	ENSG00000221680	MIR1278	MIRN1278|hsa-mir-1278|mir-1278	microRNA 1278	ncRNA
138647	chr2	211158071	211158230	+	0	NA	Intergenic	Intergenic	540579	NR_002763	29034		NM_014116	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
146147	chr20	48688671	48688830	+	0	NA	exon (NM_020820, exon 10 of 40)	exon (NM_020820, exon 10 of 40)	139249	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
208649	chr7	73026351	73026450	+	0	NA	intron (NM_001382563, intron 2 of 6)	AluJo|SINE|Alu	2019	NM_001382563	105180390		NM_001382563	ENSG00000286038	SPDYE13	SPDYE13P	speedy/RINGO cell cycle regulator family member E13	protein-coding
212323	chr7	127379751	127380050	+	0	NA	intron (NM_176814, intron 3 of 5)	(AG)n|Simple_repeat|Simple_repeat	12808	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
7645	chr1	35588151	35588450	+	0	NA	intron (NM_178548, intron 3 of 6)	intron (NM_178548, intron 3 of 6)	14986	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
38975	chr11	47564301	47564530	+	0	NA	intron (NM_001376458, intron 1 of 13)	AluSq2|SINE|Alu	-1015	NM_001143984	114971		NM_175732	ENSG00000110536	PTPMT1	DUSP23|MOSP|PLIP|PNAS-129	protein tyrosine phosphatase mitochondrial 1	protein-coding
231724	chr9	131762351	131762850	+	0	NA	Intergenic	CpG	-22524	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
232658	chr9	136486601	136487250	+	0	NA	TTS (NM_152571)	TTS (NM_152571)	-3166	NM_001276418	9919		NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding
39866	chr11	62429051	62429550	+	0	NA	Intergenic	LTR8|LTR|ERV1	10267	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
108723	chr18	77087501	77087700	+	0	NA	intron (NM_001025100, intron 2 of 3)	CpG	45183	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
10540	chr1	66975971	66976130	+	0	NA	intron (NM_001077702, intron 12 of 15)	AluSg4|SINE|Alu	45794	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
157382	chr22	44727151	44727530	+	0	NA	intron (NM_181334, intron 4 of 14)	intron (NM_181334, intron 4 of 14)	25136	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
214270	chr7	148982901	148984730	+	0	NA	promoter-TSS (NR_004392)	promoter-TSS (NR_004392)	60	NR_004392	6085		NR_004392	ENSG00000202354	RNY3	HY3|Y3	RNA, Ro60-associated Y3	ncRNA
81358	chr16	4838371	4838530	+	0	NA	intron (NR_136700, intron 3 of 14)	intron (NR_136700, intron 3 of 14)	8838	NM_032569	84656		NM_032569	ENSG00000140632	GLYR1	BM045|HIBDL|N-PAC|NP60|NPAC|hNDF	glyoxylate reductase 1 homolog	protein-coding
59831	chr13	30445421	30445930	+	0	NA	Intergenic	Intergenic	18652	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
35955	chr11	2699421	2700780	+	0	NA	promoter-TSS (NR_002728)	promoter-TSS (NR_002728)	-102	NR_002728	10984		NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1	ncRNA
97297	chr17	43213751	43213850	+	0	NA	intron (NM_001291586, intron 3 of 8)	intron (NM_001291586, intron 3 of 8)	1925	NM_001291586	113277		NM_145041	ENSG00000184988	TMEM106A	-	transmembrane protein 106A	protein-coding
118258	chr19	35256621	35256880	+	0	NA	intron (NM_001260490, intron 2 of 6)	intron (NM_001260490, intron 2 of 6)	7748	NM_001385215	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
187628	chr5	142988671	142988830	+	0	NA	intron (NR_146198, intron 11 of 22)	L1PA5|LINE|L1	-119840	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
155692	chr22	39080301	39081280	+	0	NA	intron (NM_001349436, intron 2 of 7)	MSTD|LTR|ERVL-MaLR	3515	NM_001349438	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
115612	chr19	16072251	16072850	+	0	NA	intron (NM_001367836, intron 1 of 8)	MIRb|SINE|MIR	-3945	NM_001367837	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
175285	chr4	67544171	67546130	+	0	NA	intron (NR_155754, intron 1 of 18)	intron (NR_155754, intron 1 of 18)	353	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
212029	chr7	114932751	114932850	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	10646	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
3136	chr1	12455151	12455450	+	0	NA	intron (NM_018156, intron 64 of 68)	intron (NM_018156, intron 64 of 68)	-51946	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
232908	chr9	136857901	136858530	+	0	NA	exon (NM_206920, exon 21 of 27)	exon (NM_206920, exon 21 of 27)	5869	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
8687	chr1	42013971	42014400	+	0	NA	intron (NR_038261, intron 1 of 3)	intron (NR_038261, intron 1 of 3)	21749	NR_038261	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
23280	chr1	227970301	227970850	+	0	NA	Intergenic	Intergenic	3564	NR_153418	107985355		NR_153418		LOC107985355	-	uncharacterized LOC107985355	ncRNA
133796	chr2	127795521	127796330	+	0	NA	intron (NM_001006623, intron 1 of 7)	intron (NM_001006623, intron 1 of 7)	15246	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
45140	chr11	117196071	117196580	+	0	NA	3' UTR (NM_001040455, exon 26 of 26)	3' UTR (NM_001040455, exon 26 of 26)	-2969	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
127195	chr2	38535671	38536680	+	0	NA	Intergenic	CpG	-20435	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
178452	chr4	148055651	148056230	+	0	NA	intron (NM_024605, intron 20 of 22)	intron (NM_024605, intron 20 of 22)	273345	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
90724	chr17	1975521	1975780	+	0	NA	intron (NM_178568, intron 1 of 1)	AluSz|SINE|Alu	-42066	NR_135642	105371485		NR_135642	ENSG00000228133	LOC105371485	-	uncharacterized LOC105371485	ncRNA
2219	chr1	8829221	8830080	+	0	NA	Intergenic	L2|LINE|L2	-12010	NM_001042681	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
25673	chr10	8403821	8404130	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-135670	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
59138	chr13	21440551	21440850	+	0	NA	intron (NM_153251, intron 1 of 11)	intron (NM_153251, intron 1 of 11)	18603	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
58264	chr12	128819901	128820100	+	0	NA	intron (NM_145648, intron 1 of 7)	MIRb|SINE|MIR	3958	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
211671	chr7	106282001	106282230	+	0	NA	intron (NM_005746, intron 1 of 10)	intron (NM_005746, intron 1 of 10)	2868	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
230526	chr9	128342921	128343180	+	0	NA	intron (NM_005094, intron 1 of 12)	intron (NM_005094, intron 1 of 12)	2523	NM_005094	10999		NM_005094	ENSG00000167114	SLC27A4	ACSVL4|FATP4|IPS	solute carrier family 27 member 4	protein-coding
227945	chr9	94603071	94603600	+	0	NA	3' UTR (NM_001127628, exon 8 of 8)	3' UTR (NM_001127628, exon 8 of 8)	-9511	NM_003837	8789		NM_003837	ENSG00000130957	FBP2	CORLK	fructose-bisphosphatase 2	protein-coding
126637	chr2	28819451	28820150	+	0	NA	intron (NM_001142634, intron 3 of 6)	AluJb|SINE|Alu	3803	NM_001008779	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
102846	chr17	76478921	76479180	+	0	NA	intron (NR_164787, intron 5 of 18)	intron (NR_164787, intron 5 of 18)	11447	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
65295	chr14	50060621	50061390	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	44038	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
205553	chr7	20311551	20311650	+	0	NA	non-coding (NR_110117, exon 5 of 5)	non-coding (NR_110117, exon 5 of 5)	14892	NR_110117	101927769		NR_110117	ENSG00000226097	LOC101927769	-	uncharacterized LOC101927769	ncRNA
44513	chr11	107562701	107562900	+	0	NA	intron (NR_165422, intron 1 of 10)	intron (NR_165422, intron 1 of 10)	2935	NM_138775	91801		NM_138775	ENSG00000137760	ALKBH8	ABH8|MRT71|TRM9|TRMT9|TRMT9A	alkB homolog 8, tRNA methyltransferase	protein-coding
107432	chr18	46210451	46210880	+	0	NA	intron (NM_145055, intron 1 of 4)	AluJb|SINE|Alu	36631	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
18961	chr1	168574371	168575130	+	0	NA	Intergenic	L2b|LINE|L2	-1855	NM_002995	6375		NM_002995	ENSG00000143184	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	X-C motif chemokine ligand 1	protein-coding
50247	chr12	46248721	46249600	+	0	NA	intron (NM_001077484, intron 1 of 16)	AluY|SINE|Alu	17356	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
159847	chr3	16513201	16514480	+	0	NA	promoter-TSS (NM_015150)	promoter-TSS (NM_015150)	-141	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
108624	chr18	76377651	76377750	+	0	NA	intron (NM_014643, intron 4 of 6)	intron (NM_014643, intron 4 of 6)	-113952	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
89943	chr16	89740821	89741080	+	0	NA	TTS (NM_152287)	TTS (NM_152287)	19413	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
124893	chr2	8425071	8425900	+	0	NA	Intergenic	Intergenic	-97066	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
231623	chr9	131582801	131583000	+	0	NA	intron (NM_001377935, intron 24 of 26)	intron (NM_001377935, intron 24 of 26)	37377	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
62343	chr13	99172821	99173080	+	0	NA	Intergenic	L1PA6|LINE|L1	27805	NR_036532	100289373		NR_036531	ENSG00000228889	UBAC2-AS1	-	UBAC2 antisense RNA 1	ncRNA
221974	chr8	129986971	129987530	+	0	NA	intron (NM_001353269, intron 1 of 10)	MLT1K|LTR|ERVL-MaLR	21203	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
183015	chr5	72953421	72953680	+	0	NA	Intergenic	Intergenic	-2491	NM_138782	115548		NM_138782	ENSG00000157107	FCHO2	-	FCH and mu domain containing endocytic adaptor 2	protein-coding
35437	chr11	1443221	1443680	+	0	NA	intron (NM_001256630, intron 7 of 19)	CpG-3850	32298	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
28334	chr10	46565601	46565940	+	0	NA	Intergenic	Intergenic	-8174	NM_001385287	9721		NM_014696	ENSG00000204175	GPRIN2	GRIN2|KIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding
65260	chr14	49945271	49946030	+	0	NA	Intergenic	Intergenic	-20749	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
235446	chrX	46376571	46376730	+	0	NA	Intergenic	MIRb|SINE|MIR	-48976	NR_110388	101927574		NR_110388		LINC01186	ZNF674-1	long intergenic non-protein coding RNA 1186	ncRNA
217127	chr8	25250701	25251200	+	0	NA	intron (NM_024940, intron 2 of 51)	intron (NM_024940, intron 2 of 51)	66261	NM_024940	80005		NM_024940	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
189725	chr5	176539001	176539200	+	0	NA	Intergenic	Intergenic	-1698	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
112922	chr19	7668771	7669330	+	0	NA	promoter-TSS (NM_001193374)	promoter-TSS (NM_001193374)	1	NM_001385727	56729		NM_020415	ENSG00000104918	RETN	ADSF|FIZZ3|RENT|RETN1|RSTN|XCP1	resistin	protein-coding
9159	chr1	45548651	45548750	+	0	NA	Intergenic	AluSp|SINE|Alu	-2083	NM_001202413	10327		NM_006066	ENSG00000117448	AKR1A1	ALDR1|ALR|ARM|DD3|HEL-S-6	aldo-keto reductase family 1 member A1	protein-coding
206328	chr7	30308401	30308700	+	0	NA	intron (NM_147128, intron 1 of 4)	MER5A|DNA|hAT-Charlie	-18660	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
43456	chr11	78000121	78000380	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-5582	NM_033547	92105		NM_033547	ENSG00000149262	INTS4	INT4|MST093	integrator complex subunit 4	protein-coding
46798	chr11	130219551	130219750	+	0	NA	Intergenic	AluY|SINE|Alu	59868	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
54555	chr12	92172521	92173000	+	0	NA	intron (NR_135036, intron 2 of 2)	intron (NR_135036, intron 2 of 2)	26675	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
203192	chr6	167350921	167351830	+	0	NA	Intergenic	CpG	26289	NM_031949	83887		NM_031949	ENSG00000120440	TTLL2	C6orf104|NYD-TSPG|dJ366N23.3	tubulin tyrosine ligase like 2	protein-coding
77582	chr15	85044301	85044900	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	62626	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
76999	chr15	78422601	78423200	+	0	NA	Intergenic	Intergenic	-14531	NM_001354994	3658		NM_004136	ENSG00000136381	IREB2	ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA	iron responsive element binding protein 2	protein-coding
27010	chr10	26828971	26829330	+	0	NA	intron (NR_145410, intron 1 of 11)	AluY|SINE|Alu	31808	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
71170	chr14	105037351	105038550	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-16867	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
39455	chr11	60971451	60971950	+	0	NA	promoter-TSS (NR_045638)	promoter-TSS (NR_045638)	20	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
198179	chr6	96391951	96392050	+	0	NA	Intergenic	Intergenic	-129806	NM_015323	23376		NM_015323	ENSG00000014123	UFL1	KIAA0776|Maxer|NLBP|RCAD	UFM1 specific ligase 1	protein-coding
22213	chr1	212480451	212481350	+	0	NA	Intergenic	MER21C|LTR|ERVL	47980	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
133047	chr2	112182721	112183350	+	0	NA	intron (NM_153214, intron 6 of 7)	intron (NM_153214, intron 6 of 7)	44650	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
80438	chr16	2650751	2651500	+	0	NA	Intergenic	Intergenic	12143	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
203049	chr6	166008651	166008950	+	0	NA	Intergenic	Intergenic	-20761	NR_026860	90632		NR_026860	ENSG00000112541	LINC00473	C6orf176|LNC473|bA142J11.1	long intergenic non-protein coding RNA 473	ncRNA
124771	chr2	7097051	7097800	+	0	NA	Intergenic	Intergenic	-19545	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
77318	chr15	82443851	82444280	+	0	NA	non-coding (NR_120378, exon 2 of 3)	non-coding (NR_120378, exon 2 of 3)	804	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
31721	chr10	97683601	97684530	+	0	NA	intron (NM_021732, intron 1 of 2)	intron (NM_021732, intron 1 of 2)	3176	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
35729	chr11	2000621	2001030	+	0	NA	intron (NR_131224, intron 1 of 4)	intron (NR_131224, intron 1 of 4)	641	NR_131224	283120		NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2	H19 imprinted maternally expressed transcript	ncRNA
25575	chr10	7871951	7872430	+	0	NA	intron (NM_031923, intron 2 of 6)	intron (NM_031923, intron 2 of 6)	53685	NM_031923	83860		NM_031923	ENSG00000165632	TAF3	TAF140|TAFII-140|TAFII140	TATA-box binding protein associated factor 3	protein-coding
62794	chr13	109424141	109424330	+	0	NA	Intergenic	Intergenic	23539	NR_126361	104326054		NR_126361	ENSG00000229792	LINC00399	TCONS_00021596	long intergenic non-protein coding RNA 399	ncRNA
44774	chr11	112297301	112297780	+	0	NA	intron (NR_126004, intron 2 of 3)	intron (NR_126004, intron 2 of 3)	26791	NR_126004	283140		NR_126004	ENSG00000250303	LINC02762	-	long intergenic non-protein coding RNA 2762	ncRNA
134921	chr2	151262771	151262930	+	0	NA	promoter-TSS (NM_198557)	promoter-TSS (NM_198557)	-987	NM_198557	375287		NM_198557	ENSG00000184898	RBM43	C2orf38	RNA binding motif protein 43	protein-coding
125657	chr2	20048501	20048850	+	0	NA	intron (NM_014713, intron 1 of 6)	intron (NM_014713, intron 1 of 6)	2953	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
57475	chr12	122053171	122053530	+	0	NA	intron (NM_020993, intron 4 of 5)	intron (NM_020993, intron 4 of 5)	-9940	NR_135044	100506691		NR_135044	ENSG00000256546	LINC02985	-	long intergenic non-protein coding RNA 2985	ncRNA
233244	chr9	137259121	137259480	+	0	NA	intron (NM_015456, intron 4 of 12)	MER33|DNA|hAT-Charlie	3973	NM_015456	25920		NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
30410	chr10	78971221	78971830	+	0	NA	intron (NR_015429, intron 3 of 7)	AluJr|SINE|Alu	95923	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
174675	chr4	41879851	41880150	+	0	NA	non-coding (NR_104143, exon 2 of 2)	non-coding (NR_104143, exon 2 of 2)	2611	NR_104143	101927074		NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA
217390	chr8	28165921	28166230	+	0	NA	intron (NM_018091, intron 14 of 14)	intron (NM_018091, intron 14 of 14)	72936	NM_001284224	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
113826	chr19	10614301	10614700	+	0	NA	intron (NM_001145056, intron 1 of 21)	AluJr|SINE|Alu	-11053	NM_001363611	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
209730	chr7	87155871	87156230	+	0	NA	intron (NM_021145, intron 3 of 19)	intron (NM_021145, intron 3 of 19)	3496	NM_021145	9988		NM_021145	ENSG00000135164	DMTF1	DMP1|DMTF|MRUL|hDMP1	cyclin D binding myb like transcription factor 1	protein-coding
206533	chr7	35037001	35038280	+	0	NA	promoter-TSS (NM_001366673)	promoter-TSS (NM_001366673)	-155	NM_001366673	23333		NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like C-mannosyltransferase 1	protein-coding
148807	chr21	8247971	8248500	+	0	NA	intron (NR_003287, intron 1 of 2)	L1MC4|LINE|L1	-1270	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
43865	chr11	88320421	88320750	+	0	NA	TTS (NM_001114173)	TTS (NM_001114173)	17151	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
39937	chr11	62540601	62541920	+	0	NA	intron (NM_024060, intron 1 of 5)	intron (NM_024060, intron 1 of 5)	4404	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
221529	chr8	124670351	124670450	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	58073	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
44615	chr11	108663001	108663400	+	0	NA	Intergenic	Intergenic	-1869	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
78843	chr15	99925501	99926800	+	0	NA	Intergenic	Intergenic	119127	NR_135737	400464		NM_001013670		LOC400464	-	ubiquitin conjugating enzyme E2 Q2 pseudogene	pseudo
215569	chr7	158819821	158820180	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	9509	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
57323	chr12	121683771	121684630	+	0	NA	Intergenic	Intergenic	-11556	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
114973	chr19	14021601	14022000	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-6348	NM_001311197	117579		NM_080864	ENSG00000171136	RLN3	H3|RXN3|ZINS4|insl7	relaxin 3	protein-coding
190349	chr5	179682671	179683030	+	0	NA	Intergenic	L2a|LINE|L2	-1816	NM_001164444	646019		NM_001164444	ENSG00000204659	CBY3	-	chibby family member 3	protein-coding
197721	chr6	86921651	86921750	+	0	NA	Intergenic	L1PA3|LINE|L1	-15828	NM_000865	3354		NM_000865	ENSG00000168830	HTR1E	5-HT1E	5-hydroxytryptamine receptor 1E	protein-coding
70220	chr14	100639821	100641180	+	0	NA	Intergenic	L2a|LINE|L2	-16768	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
201068	chr6	142679951	142680580	+	0	NA	Intergenic	Intergenic	-42376	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
85443	chr16	50548101	50549300	+	0	NA	intron (NM_033119, intron 1 of 9)	CpG	304	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
211894	chr7	111528251	111528750	+	0	NA	intron (NM_032549, intron 1 of 5)	intron (NM_032549, intron 1 of 5)	33992	NM_001350960	83943		NM_032549	ENSG00000184903	IMMP2L	IMMP2L-IT1|IMP2|IMP2-LIKE	inner mitochondrial membrane peptidase subunit 2	protein-coding
186822	chr5	139397121	139397380	+	0	NA	intron (NM_194296, intron 4 of 5)	intron (NM_194296, intron 4 of 5)	-2146	NM_001161546	389333		NM_001161546	ENSG00000228672	PROB1	C5orf65	proline rich basic protein 1	protein-coding
194847	chr6	34427651	34428150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1775	NM_001202470	100529239		NM_001202470	ENSG00000270800	RPS10-NUDT3	-	RPS10-NUDT3 readthrough	protein-coding
223435	chr8	143963151	143963700	+	0	NA	intron (NM_000445, intron 2 of 32)	MLT1D-int|LTR|ERVL-MaLR	-9591	NM_201379	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
56085	chr12	110660221	110660480	+	0	NA	intron (NM_032369, intron 4 of 7)	intron (NM_032369, intron 4 of 7)	28765	NM_032369	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
125907	chr2	24916921	24917650	+	0	NA	intron (NM_001377132, intron 2 of 21)	intron (NM_001377132, intron 2 of 21)	2300	NM_001377132	109		NM_004036	ENSG00000138031	ADCY3	AC-III|AC3|BMIQ19	adenylate cyclase 3	protein-coding
115186	chr19	14443001	14443200	+	0	NA	intron (NM_002741, intron 2 of 21)	intron (NM_002741, intron 2 of 21)	2823	NM_213560	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
43890	chr11	88359521	88359850	+	0	NA	Intergenic	Intergenic	-21949	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
103942	chr17	79845721	79846380	+	0	NA	Intergenic	L1MB3|LINE|L1	-6610	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
215680	chr8	738001	738200	+	0	NA	promoter-TSS (NR_134292)	promoter-TSS (NR_134292)	-448	NR_134292	401442		NR_134292	ENSG00000282375	LOC401442	-	uncharacterized LOC401442	ncRNA
49218	chr12	18165301	18165900	+	0	NA	Intergenic	MER57-int|LTR|ERV1	-75407	NM_024730	79785		NM_024730	ENSG00000111404	RERGL	-	RERG like	protein-coding
31883	chr10	100266101	100266300	+	0	NA	intron (NM_001303407, intron 1 of 12)	AluJb|SINE|Alu	1438	NM_018294	55280		NM_018294	ENSG00000095485	CWF19L1	C19L1|SCAR17|hDrn1	CWF19 like cell cycle control factor 1	protein-coding
15852	chr1	151404551	151405030	+	0	NA	3' UTR (NM_145796, exon 17 of 17)	3' UTR (NM_145796, exon 17 of 17)	5217	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
54653	chr12	93184351	93184730	+	0	NA	intron (NR_040096, intron 3 of 4)	intron (NR_040096, intron 3 of 4)	10174	NR_120492	102724933		NR_120492		LINC02412	-	long intergenic non-protein coding RNA 2412	ncRNA
127462	chr2	42210351	42210600	+	0	NA	intron (NM_019063, intron 1 of 22)	L1MC3|LINE|L1	-40244	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
141831	chr20	407121	409380	+	0	NA	promoter-TSS (NM_031229)	promoter-TSS (NM_031229)	-49	NM_001323958	10616		NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RANBP2-type and C3HC4-type zinc finger containing 1	protein-coding
103024	chr17	76997151	76997450	+	0	NA	Intergenic	LTR39|LTR|ERV1	-28101	NR_136417	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
190043	chr5	177520871	177521030	+	0	NA	intron (NM_001190946, intron 8 of 8)	intron (NM_001190946, intron 8 of 8)	-3989	NM_016222	51428		NM_016222	ENSG00000183258	DDX41	ABS|MPLPF	DEAD-box helicase 41	protein-coding
157001	chr22	42513321	42514030	+	0	NA	intron (NM_015703, intron 6 of 6)	intron (NM_015703, intron 6 of 6)	6121	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
140613	chr2	233420671	233420830	+	0	NA	intron (NM_001377259, intron 1 of 27)	intron (NM_001377259, intron 1 of 27)	1538	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
236669	chrX	76328301	76328500	+	0	NA	Intergenic	L1HS|LINE|L1	-99310	NM_020932	57692		NM_020932	ENSG00000198934	MAGEE1	DAMAGE|HCA1	MAGE family member E1	protein-coding
192870	chr6	27332901	27333500	+	0	NA	Intergenic	Intergenic	8439	NR_045612	387316		NM_032030		VN1R10P	FKSG83|VNR6I1P|b24o18.2|hs6V1-1p	vomeronasal 1 receptor 10 pseudogene	pseudo
185403	chr5	129094171	129095530	+	0	NA	exon (NM_016048, exon 1 of 5)	exon (NM_016048, exon 1 of 5)	101	NM_016048	51015		NM_016048	ENSG00000066583	ISOC1	CGI-111	isochorismatase domain containing 1	protein-coding
24264	chr1	236401201	236401600	+	0	NA	intron (NM_080738, intron 1 of 5)	intron (NM_080738, intron 1 of 5)	5987	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
106667	chr18	23132971	23133330	+	0	NA	Intergenic	AluSg|SINE|Alu	-1414	NR_023359	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
157334	chr22	44652201	44653150	+	0	NA	Intergenic	Intergenic	-15872	NM_001017529	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
184005	chr5	90870651	90870750	+	0	NA	intron (NR_003149, intron 83 of 89)	intron (NR_003149, intron 83 of 89)	311903	NM_032119	84059		NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
18872	chr1	168019551	168019650	+	0	NA	non-coding (NR_146229, exon 11 of 21)	non-coding (NR_146229, exon 11 of 21)	20940	NR_031702	100313835		NR_031702	ENSG00000221545	MIR1255B2	MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2	microRNA 1255b-2	ncRNA
109714	chr19	1072621	1073080	+	0	NA	intron (NM_001282335, intron 1 of 21)	L2c|LINE|L2	1640	NM_001282335	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
141516	chr2	241209971	241210580	+	0	NA	intron (NM_001370694, intron 13 of 24)	CpG	21598	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
181685	chr5	50554901	50555100	+	0	NA	Intergenic	L2b|LINE|L2	-110931	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
33486	chr10	119090101	119091850	+	0	NA	Intergenic	Intergenic	-10158	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
192345	chr6	24431021	24431380	+	0	NA	intron (NM_001503, intron 24 of 24)	intron (NM_001503, intron 24 of 24)	28264	NM_020662	57380		NM_020662	ENSG00000124532	MRS2	HPT|MRS2L	magnesium transporter MRS2	protein-coding
188488	chr5	154782221	154783380	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	25646	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
29201	chr10	68981021	68981480	+	0	NA	intron (NM_004728, intron 13 of 14)	MIRb|SINE|MIR	-7553	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
219552	chr8	78393471	78393700	+	0	NA	Intergenic	Intergenic	-122755	NM_006823	5569		NM_006823	ENSG00000171033	PKIA	PRKACN1	cAMP-dependent protein kinase inhibitor alpha	protein-coding
119261	chr19	39511171	39511530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3763	NM_182704	348303		NM_182704	ENSG00000186838	SELENOV	SELV	selenoprotein V	protein-coding
201096	chr6	142842001	142842200	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	103076	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
194525	chr6	33302171	33303130	+	0	NA	TTS (NM_172208).4	TTS (NM_172208).4	-3262	NM_001243738	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
236580	chrX	72936471	72936630	+	0	NA	Intergenic	Intergenic	-1613	NM_001348072	100132304		NM_001348072	ENSG00000268994	FAM236B	-	family with sequence similarity 236 member B	protein-coding
120746	chr19	45399501	45399900	+	0	NA	intron (NM_001142502, intron 1 of 12)	AluSz6|SINE|Alu	5369	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
188615	chr5	157200251	157200830	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	19700	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
60346	chr13	40789151	40790200	+	0	NA	promoter-TSS (NM_014252)	promoter-TSS (NM_014252)	64	NM_014252	10166		NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|LNC-HC|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
181418	chr5	40756971	40757150	+	0	NA	Intergenic	AluJb|SINE|Alu	-1099	NM_012382	23548		NM_012382	ENSG00000113638	TTC33	OSRF	tetratricopeptide repeat domain 33	protein-coding
147000	chr20	53563871	53564300	+	0	NA	intron (NR_110051, intron 3 of 5)	L2b|LINE|L2	11315	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
91314	chr17	4360601	4360950	+	0	NA	intron (NM_003342, intron 1 of 5)	AluSp|SINE|Alu	5899	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
148586	chr21	5100271	5100430	+	0	NA	Intergenic	CpG	-1710	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
151830	chr22	18421201	18421630	+	0	NA	promoter-TSS (NR_165629)	promoter-TSS (NR_165629)	31	NR_165629	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
72934	chr15	40433951	40434350	+	0	NA	intron (NR_148925, intron 13 of 13)	MER102b|DNA|hAT-Charlie	-5607	NM_001301132	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
67531	chr14	71005851	71006480	+	0	NA	intron (NM_014982, intron 8 of 35)	(GT)n|Simple_repeat|Simple_repeat	98706	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
212538	chr7	128849621	128849880	+	0	NA	TTS (NR_149055)	TTS (NR_149055)	12876	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
53078	chr12	57731451	57731750	+	0	NA	exon (NM_001122772, exon 9 of 19)	exon (NM_001122772, exon 9 of 19)	5360	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
54334	chr12	89663651	89664780	+	0	NA	intron (NM_001366524, intron 1 of 21)	Tigger19b|DNA|TcMar-Tigger	44623	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
109613	chr19	942521	943050	+	0	NA	intron (NM_005224, intron 3 of 8)	intron (NM_005224, intron 3 of 8)	16750	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
107484	chr18	47175471	47176730	+	0	NA	intron (NM_016097, intron 1 of 2)	CpG	264	NM_016097	51124		NM_016097	ENSG00000134049	IER3IP1	HSPC039|MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
28555	chr10	50617551	50617850	+	0	NA	intron (NM_147156, intron 1 of 10)	AluJb|SINE|Alu	6256	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
140714	chr2	234420351	234421080	+	0	NA	Intergenic	Intergenic	33880	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
86844	chr16	67926371	67926750	+	0	NA	intron (NM_006742, intron 2 of 2)	intron (NM_006742, intron 2 of 2)	5302	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
157280	chr22	44154571	44155330	+	0	NA	intron (NM_001243385, intron 10 of 12)	(TG)n|Simple_repeat|Simple_repeat	-18006	NM_001137605	64098		NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding
127575	chr2	42651021	42651280	+	0	NA	intron (NM_001282755, intron 7 of 17)	Tigger3|DNA|TcMar-Tigger	82518	NM_001330443	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
214372	chr7	149712501	149712880	+	0	NA	Intergenic	AluJb|SINE|Alu	-2321	NM_001290187	84626		NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
110464	chr19	2011201	2011830	+	0	NA	intron (NM_017797, intron 1 of 8)	intron (NM_017797, intron 1 of 8)	4199	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
228456	chr9	99840951	99842080	+	0	NA	intron (NM_173200, intron 6 of 8)	intron (NM_173200, intron 6 of 8)	19630	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
150052	chr21	37381471	37382300	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	14328	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
183154	chr5	75062101	75062300	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-9642	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
39306	chr11	58640451	58640900	+	0	NA	Intergenic	Intergenic	18010	NM_000614	1270		NM_000614	ENSG00000242689	CNTF	HCNTF	ciliary neurotrophic factor	protein-coding
66568	chr14	63388821	63389080	+	0	NA	intron (NR_104104, intron 10 of 12)	intron (NR_104104, intron 10 of 12)	-70015	NM_145171	122876		NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone subunit beta 5	protein-coding
61002	chr13	48000571	48001800	+	0	NA	promoter-TSS (NM_003850)	promoter-TSS (NM_003850)	88	NM_003850	8803		NM_003850	ENSG00000136143	SUCLA2	A-BETA|A-SCS|LINC00444|MTDPS5|SCS-betaA	succinate-CoA ligase ADP-forming subunit beta	protein-coding
203227	chr6	168840801	168841380	+	0	NA	Intergenic	CpG	123292	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
133229	chr2	113197071	113197230	+	0	NA	intron (NM_012455, intron 12 of 16)	intron (NM_012455, intron 12 of 16)	23179	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
147281	chr20	57594071	57594700	+	0	NA	Intergenic	Intergenic	26041	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
164451	chr3	59469921	59470380	+	0	NA	Intergenic	LTR8B|LTR|ERV1	188347	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
66739	chr14	64507521	64507930	+	0	NA	intron (NM_001123329, intron 1 of 1)	intron (NM_001123329, intron 1 of 1)	-2512	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
17436	chr1	156670001	156670200	+	0	NA	exon (NM_006617, exon 4 of 4)	exon (NM_006617, exon 4 of 4)	7307	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
237413	chrX	119616521	119617250	+	0	NA	TTS (NM_015129)	TTS (NM_015129)	-10461	NR_163972	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
173138	chr4	6645021	6645280	+	0	NA	Intergenic	AluSz|SINE|Alu	5059	NM_001272053	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
45985	chr11	121483801	121484380	+	0	NA	intron (NM_003105, intron 3 of 47)	intron (NM_003105, intron 3 of 47)	-2301	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
121544	chr19	47247021	47248250	+	0	NA	Intergenic	Intergenic	-8890	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
203343	chr6	170279971	170280830	+	0	NA	TTS (NR_104177)	TTS (NR_104177)	-3638	NR_126021	285804		NR_126021	ENSG00000271820	LOC285804	-	uncharacterized LOC285804	ncRNA
3180	chr1	13704601	13704800	+	0	NA	promoter-TSS (NM_012231)	promoter-TSS (NM_012231)	-155	NM_015866	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
16233	chr1	153943451	153944000	+	0	NA	intron (NM_014856, intron 2 of 27)	intron (NM_014856, intron 2 of 27)	1531	NM_001367466	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
160459	chr3	30332271	30333030	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-186218	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
69986	chr14	99969601	99970200	+	0	NA	Intergenic	Intergenic	-1522	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
52265	chr12	54497201	54498060	+	0	NA	promoter-TSS (NM_005337)	promoter-TSS (NM_005337)	-122	NM_005337	3071		NM_005337	ENSG00000123338	NCKAP1L	HEM1|IMD72	NCK associated protein 1 like	protein-coding
171029	chr3	195133221	195133800	+	0	NA	TTS (NR_036089)	TTS (NR_036089)	1070	NR_036089	100422926		NR_036089	ENSG00000265333	MIR3137	-	microRNA 3137	ncRNA
81118	chr16	4380601	4381150	+	0	NA	5' UTR (NM_138440, exon 2 of 2)	5' UTR (NM_138440, exon 2 of 2)	9027	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
230944	chr9	129416601	129417000	+	0	NA	Intergenic	MIRb|SINE|MIR	-71860	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
38229	chr11	36431871	36432230	+	0	NA	intron (NM_001160167, intron 5 of 8)	intron (NM_001160167, intron 5 of 8)	31053	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
122775	chr19	50203251	50203630	+	0	NA	promoter-TSS (NM_001077186)	promoter-TSS (NM_001077186)	-182	NM_001077186	79784		NM_024729	ENSG00000105357	MYH14	DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	myosin heavy chain 14	protein-coding
135488	chr2	161624401	161625130	+	0	NA	intron (NM_001354451, intron 1 of 25)	intron (NM_001354451, intron 1 of 25)	349	NM_001354449	57282		NM_022058	ENSG00000144290	SLC4A10	NBCn2|NCBE	solute carrier family 4 member 10	protein-coding
78419	chr15	92135521	92135780	+	0	NA	intron (NM_013272, intron 7 of 9)	intron (NM_013272, intron 7 of 9)	-258231	NM_006011	8128		NM_006011	ENSG00000140557	ST8SIA2	HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding
201404	chr6	145867801	145868200	+	0	NA	intron (NR_038246, intron 2 of 2)	MLT1B|LTR|ERVL-MaLR	53124	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
57093	chr12	121033521	121035100	+	0	NA	intron (NM_198213, intron 1 of 4)	AluJo|SINE|Alu	4932	NM_003733	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
138403	chr2	204948351	204949050	+	0	NA	intron (NM_205863, intron 2 of 21)	intron (NM_205863, intron 2 of 21)	403225	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
209398	chr7	76324201	76324600	+	0	NA	Intergenic	AluSx|SINE|Alu	21727	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
186795	chr5	139371701	139371900	+	0	NA	intron (NM_152685, intron 14 of 14)	intron (NM_152685, intron 14 of 14)	11497	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
217738	chr8	30722711	30723500	+	0	NA	intron (NM_001195104, intron 1 of 10)	intron (NM_001195104, intron 1 of 10)	4741	NM_000637	2936		NM_000637	ENSG00000104687	GSR	GR|GSRD|HEL-75|HEL-S-122m	glutathione-disulfide reductase	protein-coding
13572	chr1	116126051	116126780	+	0	NA	intron (NM_152367, intron 4 of 6)	intron (NM_152367, intron 4 of 6)	14660	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
95038	chr17	32495541	32496250	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	8902	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
94943	chr17	32068151	32068450	+	0	NA	Intergenic	AluSz6|SINE|Alu	27964	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
32627	chr10	103676221	103677030	+	0	NA	intron (NM_014631, intron 6 of 13)	intron (NM_014631, intron 6 of 13)	1590	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
52290	chr12	54588251	54589150	+	0	NA	promoter-TSS (NM_006741)	promoter-TSS (NM_006741)	-41	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
190376	chr5	179752671	179753830	+	0	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	20428	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
81811	chr16	11550301	11550500	+	0	NA	intron (NM_004862, intron 3 of 3)	MLT1D|LTR|ERVL-MaLR	-23153	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
85819	chr16	56988801	56990690	+	0	NA	intron (NR_169520, intron 1 of 47)	CpG	188	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
79977	chr16	1789371	1789530	+	0	NA	TTS (NM_001146006)	TTS (NM_001146006)	4255	NM_004970	3483		NM_004970	ENSG00000099769	IGFALS	ACLSD|ALS	insulin like growth factor binding protein acid labile subunit	protein-coding
87370	chr16	70428251	70428950	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	10500	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
41447	chr11	66087451	66087750	+	0	NA	intron (NM_018026, intron 1 of 23)	L1ME3A|LINE|L1	17328	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
202888	chr6	159980221	159980680	+	0	NA	intron (NM_000876, intron 1 of 47)	MIRb|SINE|MIR	11368	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
106305	chr18	12877901	12878100	+	0	NA	intron (NM_080422, intron 1 of 9)	AluY|SINE|Alu	6237	NM_002828	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
82386	chr16	16119951	16120750	+	0	NA	intron (NM_004996, intron 23 of 30)	intron (NM_004996, intron 23 of 30)	103121	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
20298	chr1	197149121	197149380	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-2556	NM_001206846	259266		NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	assembly factor for spindle microtubules	protein-coding
5318	chr1	25234401	25234700	+	0	NA	Intergenic	AluY|SINE|Alu	-2048	NM_207170	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
100242	chr17	59360321	59360850	+	0	NA	intron (NM_001005404, intron 2 of 4)	intron (NM_001005404, intron 2 of 4)	-5498	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
135615	chr2	168174601	168175160	+	0	NA	intron (NM_013233, intron 2 of 17)	FLAM_A|SINE|Alu	72715	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
7371	chr1	32869271	32869630	+	0	NA	intron (NM_153756, intron 1 of 5)	intron (NM_153756, intron 1 of 5)	1462	NM_001171940	252995		NM_153756	ENSG00000160097	FNDC5	FRCP2|irisin	fibronectin type III domain containing 5	protein-coding
205785	chr7	23598701	23599700	+	0	NA	intron (NM_138771, intron 2 of 3)	intron (NM_138771, intron 2 of 3)	1818	NM_138771	90693		NM_138771	ENSG00000169193	CCDC126	-	coiled-coil domain containing 126	protein-coding
4703	chr1	23118601	23119700	+	0	NA	intron (NM_033631, intron 1 of 4)	intron (NM_033631, intron 1 of 4)	49706	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
96341	chr17	40060971	40061130	+	0	NA	Intergenic	Intergenic	-1143	NM_001190919	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
21303	chr1	204492851	204492950	+	0	NA	intron (NM_001377335, intron 1 of 35)	intron (NM_001377335, intron 1 of 35)	1905	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
36242	chr11	3753921	3754930	+	0	NA	intron (NM_001365128, intron 10 of 32)	AluSg|SINE|Alu	43121	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
141337	chr2	240574771	240575130	+	0	NA	intron (NM_018226, intron 6 of 10)	intron (NM_018226, intron 6 of 10)	6466	NM_018226	57140		NM_018226	ENSG00000142327	RNPEPL1	-	arginyl aminopeptidase like 1	protein-coding
14887	chr1	146935751	146936050	+	0	NA	Intergenic	Intergenic	-2645	NM_001278141	149013		NM_001278141	ENSG00000268043	NBPF12	COAS1|KIAA1245	NBPF member 12	protein-coding
136016	chr2	172436701	172437000	+	0	NA	intron (NM_001365530, intron 1 of 25)	L2a|LINE|L2	9264	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
148978	chr21	13984801	13985000	+	0	NA	Intergenic	Intergenic	-4456	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
22335	chr1	214309871	214310230	+	0	NA	intron (NM_020197, intron 2 of 11)	intron (NM_020197, intron 2 of 11)	28891	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
23855	chr1	234768271	234769230	+	0	NA	Intergenic	Intergenic	-8694	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
90043	chr16	89913621	89914300	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4902	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
198146	chr6	90559921	90560380	+	0	NA	exon (NM_003188, exon 5 of 16)	exon (NM_003188, exon 5 of 16)	26922	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
203076	chr6	166313251	166313580	+	0	NA	Intergenic	MIR|SINE|MIR	-5023	NM_175922	285800		NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
218091	chr8	38951401	38951600	+	0	NA	intron (NM_021623, intron 6 of 11)	AluJb|SINE|Alu	-22728	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
108590	chr18	75213151	75213250	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	2403	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
172671	chr4	2732571	2732730	+	0	NA	TTS (NM_001256666)	TTS (NM_001256666)	23686	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
31130	chr10	89417371	89418430	+	0	NA	exon (NM_012420, exon 2 of 2)	exon (NM_012420, exon 2 of 2)	3332	NM_012420	24138		NM_012420	ENSG00000152778	IFIT5	ISG58|P58|RI58	interferon induced protein with tetratricopeptide repeats 5	protein-coding
132925	chr2	111430521	111430930	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	64436	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
219635	chr8	80164621	80164880	+	0	NA	intron (NR_105035, intron 1 of 6)	AluSz6|SINE|Alu	6371	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
144106	chr20	33843701	33844300	+	0	NA	intron (NM_176812, intron 1 of 4)	intron (NM_176812, intron 1 of 4)	32652	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
12597	chr1	109038101	109039030	+	0	NA	intron (NM_001142550, intron 1 of 14)	AluJo|SINE|Alu	3537	NM_001142551	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
149242	chr21	25608201	25608730	+	0	NA	promoter-TSS (NM_080794)	promoter-TSS (NM_080794)	-984	NM_017446	54148		NM_017446	ENSG00000154719	MRPL39	C21orf92|COXPD59|L39mt|L5mt|MRP-L5|MRPL5|MSTP003|PRED22|PRED66|RPML5|mL39	mitochondrial ribosomal protein L39	protein-coding
130194	chr2	84457421	84457750	+	0	NA	intron (NM_003849, intron 1 of 8)	intron (NM_003849, intron 1 of 8)	1695	NM_003849	8802		NM_003849	ENSG00000163541	SUCLG1	GALPHA|MTDPS9|SUCLA1	succinate-CoA ligase GDP/ADP-forming subunit alpha	protein-coding
125878	chr2	24586751	24587300	+	0	NA	intron (NM_147233, intron 1 of 20)	L1MEf|LINE|L1	2548	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
16315	chr1	154185821	154186410	+	0	NA	intron (NM_001364680, intron 2 of 8)	intron (NM_001364680, intron 2 of 8)	-2866	NM_001278190	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
148034	chr20	63178101	63178330	+	0	NA	promoter-TSS (NR_029670)	promoter-TSS (NR_029670)	-285	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
27641	chr10	32960071	32960650	+	0	NA	Intergenic	Intergenic	-2130	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
88608	chr16	85605051	85605150	+	0	NA	Intergenic	AluY|SINE|Alu	-6309	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
192521	chr6	25034301	25034900	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	7688	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
172358	chr4	1729521	1730250	+	0	NA	intron (NM_006342, intron 4 of 15)	LTR13|LTR|ERVK	8364	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
30858	chr10	86632171	86632330	+	0	NA	Intergenic	CpG	-22297	NM_033282	94233		NM_033282	ENSG00000122375	OPN4	MOP	opsin 4	protein-coding
89835	chr16	89583801	89584030	+	0	NA	intron (NM_153636, intron 3 of 14)	intron (NM_153636, intron 3 of 14)	8157	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
237295	chrX	115728801	115729700	+	0	NA	Intergenic	CpG	-111714	NR_147173	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
105111	chr17	82205721	82206580	+	0	NA	intron (NM_001367828, intron 1 of 16)	intron (NM_001367828, intron 1 of 16)	6692	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
168623	chr3	149655751	149656050	+	0	NA	intron (NM_001348362, intron 5 of 9)	intron (NM_001348362, intron 5 of 9)	2125	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
213874	chr7	142357951	142358430	+	0	NA	Intergenic	Intergenic	-85941	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
44254	chr11	101860771	101861000	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-54125	NM_020802	57562		NM_020802	ENSG00000110318	CEP126	KIAA1377	centrosomal protein 126	protein-coding
148301	chr20	63727021	63727700	+	0	NA	intron (NM_181485, intron 2 of 6)	AluSx|SINE|Alu	-8341	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
158300	chr22	50396721	50397000	+	0	NA	intron (NM_001351648, intron 3 of 22)	intron (NM_001351648, intron 3 of 22)	-10582	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
110008	chr19	1432651	1433300	+	0	NA	intron (NM_001352034, intron 11 of 11)	intron (NM_001352034, intron 11 of 11)	-5421	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
182334	chr5	59124411	59124630	+	0	NA	intron (NM_001364603, intron 5 of 15)	intron (NM_001364603, intron 5 of 15)	-85044	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
146772	chr20	50907651	50907950	+	0	NA	intron (NM_001347511, intron 1 of 4)	AluJo|SINE|Alu	1991	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
30151	chr10	74150321	74152530	+	0	NA	promoter-TSS (NM_001320265)	promoter-TSS (NM_001320265)	204	NM_001369123	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
99882	chr17	56678421	56679350	+	0	NA	Intergenic	Intergenic	85186	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
130929	chr2	87489171	87489530	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	19400	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
44432	chr11	104677021	104677480	+	0	NA	Intergenic	L1ME3B|LINE|L1	-67948	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
200927	chr6	139152071	139153300	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	17605	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
8086	chr1	39033921	39034680	+	0	NA	intron (NM_004552, intron 2 of 2)	intron (NM_004552, intron 2 of 2)	7950	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
194341	chr6	32866921	32867550	+	0	NA	Intergenic	Intergenic	13043	NM_002800	5698		NM_002800	ENSG00000240065	PSMB9	LMP2|PRAAS3|PRAAS6|PSMB6i|RING12|beta1i	proteasome 20S subunit beta 9	protein-coding
63955	chr14	22112151	22112680	+	0	NA	Intergenic	Intergenic	320338	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
46716	chr11	128862371	128862530	+	0	NA	intron (NM_153766, intron 1 of 2)	intron (NM_153766, intron 1 of 2)	4846	NM_153765	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
216883	chr8	22652171	22652650	+	0	NA	intron (NR_156436, intron 1 of 9)	HAL1|LINE|L1	-10201	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
182001	chr5	55235001	55235700	+	0	NA	Intergenic	AluSx|SINE|Alu	-1633	NR_125346	10309		NM_021147	ENSG00000152669	CCNO	CCNU|CILD29|UDG2	cyclin O	protein-coding
53103	chr12	57764571	57767330	+	0	NA	intron (NM_000785, intron 2 of 8)	intron (NM_000785, intron 2 of 8)	1128	NM_000785	1594		NM_000785	ENSG00000111012	CYP27B1	CP2B|CYP1|CYP1alpha|CYP27B|P450c1|PDDR|VDD1|VDDR|VDDRI|VDR	cytochrome P450 family 27 subfamily B member 1	protein-coding
2138	chr1	8351701	8352280	+	0	NA	TTS (NM_001042681)	TTS (NM_001042681)	33876	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
171247	chr3	195804201	195804700	+	0	NA	intron (NM_018406, intron 1 of 24)	intron (NM_018406, intron 1 of 24)	7479	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
162455	chr3	48474551	48475050	+	0	NA	intron (NM_016479, intron 3 of 5)	L2b|LINE|L2	-1642	NM_001272083	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
32974	chr10	110501071	110501630	+	0	NA	intron (NM_004419, intron 1 of 3)	intron (NM_004419, intron 1 of 3)	3443	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
33260	chr10	114509901	114510300	+	0	NA	intron (NM_001322883, intron 6 of 20)	THE1B|LTR|ERVL-MaLR	16813	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
120779	chr19	45437651	45438150	+	0	NA	intron (NM_001369412, intron 1 of 9)	intron (NM_001369412, intron 1 of 9)	1246	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
226421	chr9	70532771	70532930	+	0	NA	3' UTR (NM_001007471, exon 25 of 25)	3' UTR (NM_001007471, exon 25 of 25)	-118193	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
63437	chr13	114107221	114107480	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	25273	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
168724	chr3	150755151	150755750	+	0	NA	intron (NM_005067, intron 1 of 1)	AluSx3|SINE|Alu	7719	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
166048	chr3	108749851	108750030	+	0	NA	Intergenic	L1HS|LINE|L1	7343	NM_032579	84666		NM_032579	ENSG00000163515	RETNLB	FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2	resistin like beta	protein-coding
73543	chr15	43833151	43833450	+	0	NA	intron (NM_024908, intron 2 of 12)	intron (NM_024908, intron 2 of 12)	6298	NM_001167941	79968		NM_024908	ENSG00000092470	WDR76	CDW14|CMR1	WD repeat domain 76	protein-coding
143682	chr20	32091601	32092250	+	0	NA	intron (NM_002110, intron 10 of 12)	AluJr|SINE|Alu	-17789	NM_014742	9777		NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
209366	chr7	76290151	76290450	+	0	NA	Intergenic	Intergenic	-12373	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
48565	chr12	10276671	10277030	+	0	NA	intron (NM_001351060, intron 2 of 8)	intron (NM_001351060, intron 2 of 8)	-27596	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
171323	chr3	195983921	195984180	+	0	NA	intron (NR_003264, intron 5 of 16)	intron (NR_003264, intron 5 of 16)	6229	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
92204	chr17	7851171	7852380	+	0	NA	exon (NM_001080424, exon 17 of 22)	exon (NM_001080424, exon 17 of 22)	-3291	NM_203411	92162		NM_203411	ENSG00000167874	TMEM88	-	transmembrane protein 88	protein-coding
84551	chr16	30565921	30566480	+	0	NA	Intergenic	L2a|LINE|L2	6207	NM_145271	146542		NM_145271	ENSG00000229809	ZNF688	-	zinc finger protein 688	protein-coding
29886	chr10	73059621	73060250	+	0	NA	intron (NM_001017962, intron 5 of 14)	AluJo|SINE|Alu	37039	NM_001142596	5033		NM_000917	ENSG00000122884	P4HA1	P4HA	prolyl 4-hydroxylase subunit alpha 1	protein-coding
182280	chr5	57228321	57228630	+	0	NA	intron (NM_001127235, intron 3 of 11)	intron (NM_001127235, intron 3 of 11)	14401	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
33295	chr10	114767521	114768880	+	0	NA	5' UTR (NM_001322886, exon 1 of 21)	5' UTR (NM_001322886, exon 1 of 21)	104	NM_001322884	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
179332	chr4	182826571	182826730	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	90603	NM_001351747	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
79624	chr16	1105221	1105750	+	0	NA	Intergenic	Intergenic	-9241	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
156595	chr22	41536171	41536400	+	0	NA	intron (NM_138338, intron 3 of 6)	AluY|SINE|Alu	8185	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
116515	chr19	18160521	18162580	+	0	NA	intron (NR_073517, intron 6 of 15)	G-rich|Low_complexity|Low_complexity	8387	NR_162071	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
201172	chr6	142948821	142950030	+	0	NA	Intergenic	Intergenic	-4249	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
48590	chr12	10312201	10312930	+	0	NA	intron (NR_147038, intron 4 of 5)	AluYh3|SINE|Alu	4695	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
230022	chr9	127204951	127205280	+	0	NA	intron (NM_001366400, intron 14 of 18)	intron (NM_001366400, intron 14 of 18)	-58547	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
173276	chr4	7055471	7055830	+	0	NA	3' UTR (NM_152293, exon 2 of 2)	3' UTR (NM_152293, exon 2 of 2)	-9419	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
25603	chr10	8059201	8059600	+	0	NA	intron (NM_002051, intron 3 of 5)	intron (NM_002051, intron 3 of 5)	4712	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
96649	chr17	40614301	40614600	+	0	NA	Intergenic	Intergenic	33368	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
186478	chr5	138067751	138068050	+	0	NA	Intergenic	AluYe6|SINE|Alu	-15992	NM_058244	7478		NM_031933	ENSG00000061492	WNT8A	WNT8D	Wnt family member 8A	protein-coding
6155	chr1	27399871	27400030	+	0	NA	Intergenic	Intergenic	7328	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
28626	chr10	58386751	58387050	+	0	NA	intron (NR_073073, intron 3 of 7)	intron (NR_073073, intron 3 of 7)	1490	NM_003201	7019		NM_003201	ENSG00000108064	TFAM	MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	transcription factor A, mitochondrial	protein-coding
125950	chr2	25210071	25211030	+	0	NA	Intergenic	LTR13A|LTR|ERVK	6237	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
133096	chr2	112624251	112625030	+	0	NA	Intergenic	Intergenic	19540	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
122498	chr19	49578201	49578400	+	0	NA	intron (NM_001363649, intron 1 of 9)	AluSq|SINE|Alu	2256	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
8680	chr1	41915671	41916810	+	0	NA	intron (NR_038260, intron 1 of 2)	intron (NR_038260, intron 1 of 2)	2682	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
109155	chr19	155151	155250	+	0	NA	Intergenic	Intergenic	47009	NR_028324	399844		NM_001004321		LINC01002	-	long intergenic non-protein coding RNA 1002	ncRNA
158851	chr3	9817321	9817580	+	0	NA	intron (NR_037162, intron 4 of 10)	intron (NR_037162, intron 4 of 10)	7188	NR_037162	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
212729	chr7	129845051	129845550	+	0	NA	intron (NM_182697, intron 3 of 4)	intron (NM_182697, intron 3 of 4)	-70286	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
46388	chr11	126302121	126302580	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1710	NM_014026	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
78884	chr15	100710351	100710450	+	0	NA	Intergenic	(GTGGAG)n|Simple_repeat|Simple_repeat	107811	NM_198243	140460		NM_024708	ENSG00000183475	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding
2491	chr1	9681971	9682130	+	0	NA	intron (NR_126368, intron 1 of 1)	AluJb|SINE|Alu	5524	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
223845	chr9	13251	13780	+	0	NA	TTS (NM_182905)	TTS (NM_182905)	1528	NR_051986	100287596		NR_051986		DDX11L5	-	DEAD/H-box helicase 11 like 5 (pseudogene)	pseudo
194437	chr6	33144351	33144650	+	0	NA	intron (NR_138084, intron 1 of 2)	AluJb|SINE|Alu	1176	NR_138084	414768		NR_138084		HCG24	-	HLA complex group 24	ncRNA
225106	chr9	33446231	33447000	+	0	NA	intron (NM_004925, intron 1 of 5)	intron (NM_004925, intron 1 of 5)	978	NM_004925	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
46512	chr11	128441471	128441700	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	80725	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
134558	chr2	144183351	144184130	+	0	NA	intron (NM_001354351, intron 7 of 15)	intron (NM_001354351, intron 7 of 15)	53599	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
148850	chr21	8415971	8416130	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	-16480	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
85484	chr16	50719821	50720680	+	0	NA	intron (NR_163434, intron 8 of 12)	intron (NR_163434, intron 8 of 12)	20870	NM_001293557	64127		NM_022162	ENSG00000167207	NOD2	ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS	nucleotide binding oligomerization domain containing 2	protein-coding
146576	chr20	50086901	50087100	+	0	NA	intron (NM_001257394, intron 1 of 2)	AluY|SINE|Alu	26150	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
7722	chr1	36108651	36109680	+	0	NA	intron (NM_001294347, intron 2 of 3)	intron (NM_001294347, intron 2 of 3)	16057	NM_005202	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
24497	chr1	244439401	244439950	+	0	NA	intron (NM_001365073, intron 1 of 12)	L1M1|LINE|L1	12234	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
223370	chr8	143879501	143879700	+	0	NA	Intergenic	Intergenic	-1133	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238570	chrX	153821701	153822830	+	0	NA	intron (NM_032512, intron 1 of 7)	intron (NM_032512, intron 1 of 7)	7694	NM_001303516	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
125600	chr2	17751171	17751630	+	0	NA	intron (NM_024624, intron 1 of 26)	AluSz|SINE|Alu	2410	NM_001142286	79677		NM_024624	ENSG00000163029	SMC6	SMC-6|SMC6L1|hSMC6	structural maintenance of chromosomes 6	protein-coding
236856	chrX	79366501	79368150	+	0	NA	promoter-TSS (NM_004867)	promoter-TSS (NM_004867)	9	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
53735	chr12	68633771	68634480	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	-6750	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
200174	chr6	130700501	130700700	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-126806	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
3741	chr1	16637851	16638100	+	0	NA	Intergenic	Intergenic	-7069	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
215987	chr8	8868501	8870050	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	24355	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
108023	chr18	58819101	58819750	+	0	NA	intron (NR_146904, intron 1 of 2)	intron (NR_146904, intron 1 of 2)	5545	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
95255	chr17	35449871	35450230	+	0	NA	Intergenic	Intergenic	-1284	NM_144682	146857		NM_144682	ENSG00000154760	SLFN13	SLFN10|hSLFN13	schlafen family member 13	protein-coding
170949	chr3	194369671	194369830	+	0	NA	promoter-TSS (NM_001135057)	promoter-TSS (NM_001135057)	-7	NM_001135057	131578		NM_130830	ENSG00000172061	LRRC15	LIB	leucine rich repeat containing 15	protein-coding
231024	chr9	129586351	129586450	+	0	NA	Intergenic	L2c|LINE|L2	-22484	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
37997	chr11	35050371	35050730	+	0	NA	Intergenic	Intergenic	87482	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
31844	chr10	99711151	99711500	+	0	NA	TTS (NM_020354)	TTS (NM_020354)	20802	NM_001320975	1355		NM_004376	ENSG00000014919	COX15	CEMCOX2|HAS|MC4DN6	cytochrome c oxidase assembly homolog COX15	protein-coding
131343	chr2	96156051	96156870	+	0	NA	Intergenic	Intergenic	-11020	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
41826	chr11	67055871	67056030	+	0	NA	promoter-TSS (NM_001300886)	promoter-TSS (NM_001300886)	-897	NM_001300886	29984		NM_014578	ENSG00000173156	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
226233	chr9	66262821	66263250	+	0	NA	Intergenic	Intergenic	-98129	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
71527	chr14	106170271	106171050	+	0	NA	Intergenic	Intergenic	-117014	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
98622	chr17	47785621	47785980	+	0	NA	Intergenic	Intergenic	35994	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
189025	chr5	169213551	169213650	+	0	NA	intron (NM_003062, intron 3 of 35)	L2a|LINE|L2	50094	NR_030311	693170		NR_030311	ENSG00000207619	MIR585	MIRN585|hsa-mir-585|mir-585	microRNA 585	ncRNA
208344	chr7	66493311	66494730	+	0	NA	non-coding (NR_134570, exon 1 of 2)	non-coding (NR_134570, exon 1 of 2)	329	NR_134571	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
158965	chr3	10240371	10241150	+	0	NA	intron (NM_001570, intron 12 of 12)	AluSp|SINE|Alu	-7699	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
140155	chr2	231609021	231609600	+	0	NA	Intergenic	L2a|LINE|L2	16446	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
72250	chr15	30545351	30545450	+	0	NA	Intergenic	Intergenic	-6678	NM_001355476	727909		NM_001355476	ENSG00000178115	GOLGA8Q	-	golgin A8 family member Q	protein-coding
139378	chr2	221569371	221569830	+	0	NA	intron (NM_004438, intron 1 of 17)	intron (NM_004438, intron 1 of 17)	2704	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
194896	chr6	34689501	34690350	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-6229	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
201229	chr6	143568801	143569340	+	0	NA	non-coding (NR_027113, exon 1 of 3)	non-coding (NR_027113, exon 1 of 3)	269	NR_027113	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
131227	chr2	95165171	95166150	+	0	NA	promoter-TSS (NM_021088)	promoter-TSS (NM_021088)	-149	NM_001017396	7549		NM_021088	ENSG00000275111	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
183715	chr5	80996421	80996700	+	0	NA	intron (NM_006909, intron 1 of 26)	(TCC)n|Simple_repeat|Simple_repeat	-35653	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
77053	chr15	78872051	78873200	+	0	NA	promoter-TSS (NM_006791)	promoter-TSS (NM_006791)	-156	NM_206839	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
67257	chr14	69090221	69090480	+	0	NA	3' UTR (NM_001284208, exon 7 of 7)	3' UTR (NM_001284208, exon 7 of 7)	62249	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
2001	chr1	6739921	6740280	+	0	NA	Intergenic	AluJo|SINE|Alu	12573	NR_104621	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
4932	chr1	23915571	23915930	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-2388	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
188153	chr5	150429071	150429600	+	0	NA	Intergenic	(TCTGG)n|Simple_repeat|Simple_repeat	-16399	NM_001025159	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
106648	chr18	22929751	22930430	+	0	NA	Intergenic	Intergenic	-3238	NM_002894	5932		NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JAWAD|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding
199505	chr6	118683571	118683930	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	26325	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
18362	chr1	161305071	161306730	+	0	NA	exon (NM_000530, exon 6 of 6)	exon (NM_000530, exon 6 of 6)	4068	NM_000530	4359		NM_000530	ENSG00000158887	MPZ	CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0	myelin protein zero	protein-coding
69262	chr14	93040571	93040930	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	-3776	NM_001363707	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
87529	chr16	71901201	71901400	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluY|SINE|Alu	5769	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
2568	chr1	9788701	9789030	+	0	NA	intron (NM_014944, intron 1 of 17)	AluY|SINE|Alu	35100	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
216259	chr8	12433471	12434000	+	0	NA	intron (NR_148876, intron 2 of 5).2	intron (NR_148876, intron 2 of 5).2	2563	NR_148878	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
13776	chr1	117121201	117122380	+	0	NA	promoter-TSS (NM_001145635)	promoter-TSS (NM_001145635)	-41	NM_025188	80263		NM_025188	ENSG00000134253	TRIM45	RNF99	tripartite motif containing 45	protein-coding
207451	chr7	44577151	44577750	+	0	NA	TTS (NM_182547)	TTS (NM_182547)	-2912	NM_019082	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
120797	chr19	45457801	45458530	+	0	NA	Intergenic	(GTCTGT)n|Simple_repeat|Simple_repeat	-6618	NM_001369413	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
17574	chr1	156838921	156839700	+	0	NA	TTS (NM_014215)	TTS (NM_014215)	19807	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
221738	chr8	127670771	127671330	+	0	NA	Intergenic	Intergenic	62917	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
83507	chr16	27442951	27443250	+	0	NA	exon (NM_181079, exon 6 of 10)	exon (NM_181079, exon 6 of 10)	10293	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
86883	chr16	67984721	67985150	+	0	NA	Intergenic	Intergenic	-4436	NM_001129758	64180		NM_022357	ENSG00000141096	DPEP3	MBD3	dipeptidase 3	protein-coding
142159	chr20	2824201	2824930	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	8201	NM_001167670	100288797		NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
82718	chr16	20902701	20902900	+	0	NA	intron (NR_161432, intron 2 of 3)	intron (NR_161432, intron 2 of 3)	1538	NR_161432	57149		NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
30912	chr10	87083871	87085030	+	0	NA	intron (NM_001318906, intron 1 of 13)	intron (NM_001318906, intron 1 of 13)	9637	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
19496	chr1	175151701	175152350	+	0	NA	Intergenic	AluSq2|SINE|Alu	40751	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
194868	chr6	34572351	34572850	+	0	NA	Intergenic	Intergenic	-16267	NM_001252294	25803		NM_012391	ENSG00000124664	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding
131049	chr2	88342721	88342980	+	0	NA	Intergenic	LTR50|LTR|ERVL	109843	NM_001135649	344167		NM_001135649	ENSG00000214336	FOXI3	CFM2	forkhead box I3	protein-coding
139901	chr2	230717501	230718100	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	4252	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
201047	chr6	142188151	142188530	+	0	NA	intron (NM_001286371, intron 4 of 6)	AluSg|SINE|Alu	41077	NM_016485	51534		NM_016485	ENSG00000009844	VTA1	6orf55|C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1	vesicle trafficking 1	protein-coding
229060	chr9	114345501	114345700	+	0	NA	intron (NM_001317952, intron 17 of 20)	intron (NM_001317952, intron 17 of 20)	15731	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
170588	chr3	186882901	186883200	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-21682	NR_046662	100874095		NR_046662	ENSG00000226482	ADIPOQ-AS1	-	ADIPOQ antisense RNA 1	ncRNA
43423	chr11	77475921	77476480	+	0	NA	Intergenic	L2a|LINE|L2	-2106	NM_001128620	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
113595	chr19	10283671	10283830	+	0	NA	exon (NM_000201, exon 3 of 7)	exon (NM_000201, exon 3 of 7)	-3205	NM_001039132	3386		NM_001544	ENSG00000105371	ICAM4	CD242|LW	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	protein-coding
153515	chr22	26511771	26512950	+	0	NA	promoter-TSS (NR_144529)	promoter-TSS (NR_144529)	113	NM_012143	24144		NM_012143	ENSG00000100109	TFIP11	NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6	tuftelin interacting protein 11	protein-coding
131192	chr2	95025201	95026550	+	0	NA	exon (NM_002371, exon 1 of 4)	exon (NM_002371, exon 1 of 4)	167	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
43375	chr11	77038521	77038780	+	0	NA	intron (NM_138706, intron 1 of 1)	intron (NM_138706, intron 1 of 1)	4252	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
63089	chr13	113214051	113214350	+	0	NA	intron (NM_003589, intron 2 of 19)	intron (NM_003589, intron 2 of 19)	4587	NM_001008895	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
139651	chr2	226796771	226797280	+	0	NA	exon (NM_005544, exon 1 of 2)	exon (NM_005544, exon 1 of 2)	2795	NM_005544	3667		NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
196189	chr6	42692451	42692950	+	0	NA	3' UTR (NM_015255, exon 47 of 47)	3' UTR (NM_015255, exon 47 of 47)	29897	NM_000322	5961		NM_000322	ENSG00000112619	PRPH2	AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2	peripherin 2	protein-coding
112744	chr19	7380321	7381050	+	0	NA	intron (NM_001367823, intron 7 of 28)	AluJr|SINE|Alu	-14460	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
27349	chr10	30695571	30696600	+	0	NA	intron (NR_036438, intron 2 of 9)	intron (NR_036438, intron 2 of 9)	3811	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
6481	chr1	28364371	28365000	+	0	NA	Intergenic	AluSq|SINE|Alu	-5055	NM_001350161	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
6366	chr1	27857671	27858800	+	0	NA	Intergenic	Intergenic	-14308	NM_004848	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
38905	chr11	47416901	47417100	+	0	NA	TTS (NM_001128225)	TTS (NM_001128225)	8410	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
199164	chr6	111742801	111743480	+	0	NA	intron (NM_002037, intron 3 of 13)	AluSg|SINE|Alu	15991	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
141441	chr2	241025701	241025980	+	0	NA	intron (NM_001080437, intron 1 of 31)	L1MA9|LINE|L1	27222	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
231942	chr9	133128471	133128630	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	851	NM_001271775	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
200402	chr6	134437271	134437630	+	0	NA	promoter-TSS (NR_038216)	promoter-TSS (NR_038216)	-266	NR_038216	154092		NR_038216	ENSG00000236700	LINC01010	-	long intergenic non-protein coding RNA 1010	ncRNA
86721	chr16	67564901	67565100	+	0	NA	intron (NM_006565, intron 1 of 11)	intron (NM_006565, intron 1 of 11)	2474	NM_006565	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
69591	chr14	97299601	97299930	+	0	NA	Intergenic	Intergenic	144908	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
98275	chr17	46201771	46201930	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluJb|SINE|Alu	8277	NR_034172	644246		NR_034172	ENSG00000214401	KANSL1-AS1	-	KANSL1 antisense RNA 1	ncRNA
49142	chr12	14940871	14941100	+	0	NA	Intergenic	L1PA16|LINE|L1	-2448	NM_152321	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
106960	chr18	31659101	31659730	+	0	NA	intron (NM_001330570, intron 1 of 7)	intron (NM_001330570, intron 1 of 7)	25166	NM_004775	9331		NM_004775	ENSG00000118276	B4GALT6	B4Gal-T6|beta4Gal-T6	beta-1,4-galactosyltransferase 6	protein-coding
122466	chr19	49530301	49530500	+	0	NA	intron (NM_020650, intron 2 of 6)	AluSx|SINE|Alu	2397	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
133068	chr2	112420271	112420630	+	0	NA	intron (NM_005054, intron 4 of 22).3	AluSx|SINE|Alu	13164	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
34012	chr10	124699551	124700050	+	0	NA	intron (NM_014661, intron 2 of 4)	intron (NM_014661, intron 2 of 4)	-4228	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
210725	chr7	100610451	100610930	+	0	NA	Intergenic	AluYk2|SINE|Alu	-1472	NM_001040097	64598		NM_023948	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
147057	chr20	53688751	53689330	+	0	NA	Intergenic	Intergenic	80686	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
107275	chr18	44359351	44359850	+	0	NA	intron (NR_110792, intron 2 of 4)	L1PA7|LINE|L1	172097	NR_110792	101927921		NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
112643	chr19	6806571	6806830	+	0	NA	intron (NM_005428, intron 1 of 26)	MLT1K|LTR|ERVL-MaLR	33992	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
108329	chr18	63950271	63950630	+	0	NA	intron (NM_001123366, intron 1 of 3)	intron (NM_001123366, intron 1 of 3)	1149	NM_001123366	284293		NM_001123366	ENSG00000221887	HMSD	ACC-6|ACC6|C18orf53|HSMD-v	histocompatibility minor serpin domain containing	protein-coding
238327	chrX	149531951	149532500	+	0	NA	intron (NR_027455, intron 7 of 9)	intron (NR_027455, intron 7 of 9)	7527	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
223527	chr8	144114201	144114600	+	0	NA	exon (NM_001316309, exon 19 of 24)	exon (NM_001316309, exon 19 of 24)	6661	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
172945	chr4	3523551	3523900	+	0	NA	intron (NR_110005, intron 2 of 7)	intron (NR_110005, intron 2 of 7)	8424	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
238243	chrX	143725551	143725650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4932	NM_001009615	494119		NM_001009615	ENSG00000268988	SPANXN2	CT11.7|SPANX-N2	SPANX family member N2	protein-coding
163170	chr3	50174771	50174930	+	0	NA	intron (NM_001318798, intron 5 of 17)	intron (NM_001318798, intron 5 of 17)	15831	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
32730	chr10	104297451	104298030	+	0	NA	intron (NM_183239, intron 6 of 6)	intron (NM_183239, intron 6 of 6)	22574	NM_001191015	119391		NM_183239	ENSG00000065621	GSTO2	GSTO 2-2|bA127L20.1	glutathione S-transferase omega 2	protein-coding
151440	chr21	46145571	46146050	+	0	NA	intron (NM_206965, intron 9 of 13)	CpG-18617	-5565	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
25069	chr10	3811261	3812150	+	0	NA	Intergenic	Intergenic	-22245	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
21061	chr1	203290301	203292030	+	0	NA	Intergenic	MIRc|SINE|MIR	3465	NR_117098	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
101244	chr17	66254951	66256080	+	0	NA	Intergenic	Intergenic	-26100	NM_000042	350		NM_000042	ENSG00000091583	APOH	B2G1|B2GP1|BG	apolipoprotein H	protein-coding
165306	chr3	86860351	86860450	+	0	NA	Intergenic	Intergenic	130749	NM_001320493	389136		NM_016206	ENSG00000206538	VGLL3	VGL-3|VGL3	vestigial like family member 3	protein-coding
98755	chr17	48099771	48099930	+	0	NA	intron (NM_001127228, intron 1 of 4)	intron (NM_001127228, intron 1 of 4)	1336	NM_006807	10951		NM_006807	ENSG00000108468	CBX1	CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|Hp1beta|M31|MOD1|p25beta	chromobox 1	protein-coding
161190	chr3	39139201	39139830	+	0	NA	TTS (NM_001105513)	TTS (NM_001105513)	1309	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
74693	chr15	62212701	62212980	+	0	NA	Intergenic	HERVK14-int|LTR|ERVK	-9522	NR_148210	107984784		NR_148210	ENSG00000259697	LOC107984784	-	uncharacterized LOC107984784	ncRNA
156826	chr22	41938681	41939400	+	0	NA	3' UTR (NM_001304370, exon 5 of 5)	3' UTR (NM_001304370, exon 5 of 5)	1179	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
111462	chr19	3881771	3882180	+	0	NA	intron (NM_033064, intron 1 of 12)	intron (NM_033064, intron 1 of 12)	1290	NM_033064	85300		NM_033064	ENSG00000167654	ATCAY	BNIP-H|CLAC	ATCAY kinesin light chain interacting caytaxin	protein-coding
141712	chr2	241849471	241849830	+	0	NA	TTS (NM_005018)	TTS (NM_005018)	9244	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
39548	chr11	61115771	61115930	+	0	NA	intron (NM_001346456, intron 2 of 10)	MIRb|SINE|MIR	13361	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
30657	chr10	80475321	80475830	+	0	NA	intron (NM_001351272, intron 2 of 9)	intron (NM_001351272, intron 2 of 9)	7334	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
48079	chr12	7158901	7159300	+	0	NA	TTS (NM_014718)	TTS (NM_014718)	28729	NM_014718	9746		NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
9224	chr1	45689601	45689800	+	0	NA	intron (NM_016486, intron 1 of 2)	AluY|SINE|Alu	1519	NM_016486	51249		NM_016486	ENSG00000159596	TMEM69	C1orf154	transmembrane protein 69	protein-coding
151054	chr21	44697971	44698130	+	0	NA	TTS (NM_198699)	TTS (NM_198699)	878	NM_198699	386685		NM_198699	ENSG00000189169	KRTAP10-12	KAP10.12|KRTAP18-12|KRTAP18.12	keratin associated protein 10-12	protein-coding
88807	chr16	87398771	87399400	+	0	NA	intron (NM_022818, intron 2 of 3)	AluJo|SINE|Alu	6749	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
68385	chr14	79728321	79728580	+	0	NA	intron (NR_158975, intron 19 of 21)	intron (NR_158975, intron 19 of 21)	449070	NM_138970	9369		NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
125422	chr2	11773421	11773880	+	0	NA	exon (NM_001349205, exon 6 of 22)	exon (NM_001349205, exon 6 of 22)	6206	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
90084	chr16	90021051	90021350	+	0	NA	intron (NM_001286209, intron 1 of 10)	intron (NM_001286209, intron 1 of 10)	-1310	NM_001288709	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
218873	chr8	60529921	60530500	+	0	NA	intron (NM_001242644, intron 1 of 6)	AluSx|SINE|Alu	13223	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
163624	chr3	52048451	52048750	+	0	NA	TTS (NM_001947)	TTS (NM_001947)	7971	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
75407	chr15	65766051	65766450	+	0	NA	intron (NM_001376919, intron 1 of 31)	AluSg|SINE|Alu	26043	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
219756	chr8	81085401	81086000	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	26368	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
4909	chr1	23837001	23837200	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-11641	NM_001166059	3155		NM_000191	ENSG00000117305	HMGCL	HL|HMGCL1	3-hydroxy-3-methylglutaryl-CoA lyase	protein-coding
166067	chr3	108833221	108834050	+	0	NA	intron (NM_016388, intron 2 of 5)	intron (NM_016388, intron 2 of 5)	10849	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
120542	chr19	44914601	44915600	+	0	NA	intron (NM_001645, intron 2 of 3)	intron (NM_001645, intron 2 of 3)	428	NM_001379687	341		NM_001645	ENSG00000130208	APOC1	Apo-CI|ApoC-I|apo-CIB|apoC-IB	apolipoprotein C1	protein-coding
143033	chr20	21106521	21106780	+	0	NA	promoter-TSS (NR_147212)	promoter-TSS (NR_147212)	-292	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
27147	chr10	28330171	28331380	+	0	NA	Intergenic	AluJo|SINE|Alu	-27711	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
154984	chr22	37297621	37298430	+	0	NA	intron (NM_001318024, intron 5 of 12)	L2a|LINE|L2	15517	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
40030	chr11	62676801	62677400	+	0	NA	intron (NM_015853, intron 7 of 7)	intron (NM_015853, intron 7 of 7)	1973	NM_001286077	51035		NM_015853	ENSG00000162191	UBXN1	2B28|SAKS1|UBXD10	UBX domain protein 1	protein-coding
148782	chr21	8216501	8217100	+	0	NA	non-coding (NR_146144, exon 1 of 1)	non-coding (NR_146144, exon 1 of 1)	2912	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
238821	chrX	154428421	154429680	+	0	NA	promoter-TSS (NR_103768)	promoter-TSS (NR_103768)	373	NM_001183	537		NM_001183	ENSG00000071553	ATP6AP1	16A|ATP6IP1|ATP6S1|Ac45|CF2|VATPS1|XAP-3|XAP3	ATPase H+ transporting accessory protein 1	protein-coding
84237	chr16	29993721	29994230	+	0	NA	exon (NM_003609, exon 4 of 7)	exon (NM_003609, exon 4 of 7)	1642	NM_003609	8479		NM_003609	ENSG00000149929	HIRIP3	-	HIRA interacting protein 3	protein-coding
171268	chr3	195870801	195871000	+	0	NA	intron (NM_005781, intron 10 of 14)	intron (NM_005781, intron 10 of 14)	-10496	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
111575	chr19	4063421	4064100	+	0	NA	intron (NM_015898, intron 1 of 2)	intron (NM_015898, intron 1 of 2)	1769	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
206112	chr7	27235321	27235900	+	0	NA	Intergenic	CpG	-7192	NM_001989	2128		NM_001989	ENSG00000106038	EVX1	EVX-1	even-skipped homeobox 1	protein-coding
133172	chr2	112777271	112777430	+	0	NA	intron (NM_001371554, intron 6 of 6)	intron (NM_001371554, intron 6 of 6)	7050	NM_001371554	3552		NM_000575	ENSG00000115008	IL1A	IL-1 alpha|IL-1A|IL1|IL1-ALPHA|IL1F1	interleukin 1 alpha	protein-coding
170976	chr3	194572651	194572950	+	0	NA	Intergenic	Intergenic	-11468	NR_047573	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
8037	chr1	38117951	38118050	+	0	NA	intron (NR_168386, intron 4 of 4)	intron (NR_168386, intron 4 of 4)	28769	NR_037432	100500801		NR_037432	ENSG00000265596	MIR3659	mir-3659	microRNA 3659	ncRNA
94984	chr17	32330971	32331530	+	0	NA	3' UTR (NM_022344, exon 10 of 10)	3' UTR (NM_022344, exon 10 of 10)	10923	NM_022344	64149		NM_022344	ENSG00000108666	C17orf75	NJMU-R1|SRI2	chromosome 17 open reading frame 75	protein-coding
146549	chr20	49985271	49986630	+	0	NA	intron (NM_005985, intron 2 of 2)	intron (NM_005985, intron 2 of 2)	2970	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
13256	chr1	112712321	112713080	+	0	NA	intron (NM_005167, intron 3 of 9)	intron (NM_005167, intron 3 of 9)	2628	NM_005167	333926		NM_005167	ENSG00000155367	PPM1J	PP2C-zeta|PP2CZ|PP2Czeta|PPP2CZ	protein phosphatase, Mg2+/Mn2+ dependent 1J	protein-coding
56959	chr12	120527501	120527980	+	0	NA	intron (NM_032314, intron 1 of 6)	AluY|SINE|Alu	1418	NM_032314	84274		NM_032314	ENSG00000110871	COQ5	COQ10D9	coenzyme Q5, methyltransferase	protein-coding
117544	chr19	21008171	21008350	+	0	NA	Intergenic	LTR13|LTR|ERVK	-12397	NM_001172671	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
169013	chr3	152441671	152442250	+	0	NA	intron (NM_207296, intron 4 of 8)	AluSx1|SINE|Alu	-100970	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
15918	chr1	151716751	151717550	+	0	NA	promoter-TSS (NM_001172649)	promoter-TSS (NM_001172649)	-347	NM_007185	11189		NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP Elav-like family member 3	protein-coding
128290	chr2	54602351	54602650	+	0	NA	intron (NM_178313, intron 2 of 30)	intron (NM_178313, intron 2 of 30)	44106	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
229119	chr9	114404701	114404900	+	0	NA	intron (NM_015404, intron 9 of 11)	MIRb|SINE|MIR	-10395	NM_030767	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
198197	chr6	96921551	96922250	+	0	NA	intron (NM_001323258, intron 2 of 7)	L4_C_Mam|LINE|RTE-X	-2720	NR_136580	114792		NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
44930	chr11	116224471	116224630	+	0	NA	Intergenic	Intergenic	-414872	NR_135069	101929011		NR_135069	ENSG00000237937	LINC02702	LASER	long intergenic non-protein coding RNA 2702	ncRNA
173249	chr4	6984921	6985400	+	0	NA	intron (NM_020773, intron 3 of 13)	L1MC5a|LINE|L1	-2049	NM_001113363	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
163723	chr3	52307201	52308430	+	0	NA	Intergenic	Intergenic	-8504	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
60508	chr13	41340401	41340600	+	0	NA	intron (NM_024561, intron 9 of 19)	L1P1|LINE|L1	-28462	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
59033	chr13	20420501	20420700	+	0	NA	intron (NM_015974, intron 5 of 7)	intron (NM_015974, intron 5 of 7)	13246	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
32828	chr10	110007241	110009130	+	0	NA	non-coding (NR_038943, exon 1 of 5)	non-coding (NR_038943, exon 1 of 5)	196	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
80793	chr16	3266701	3267200	+	0	NA	intron (NR_033904, intron 1 of 1)	intron (NR_033904, intron 1 of 1)	3182	NR_033904	283876		NR_033904	ENSG00000281005	LINC00921	-	long intergenic non-protein coding RNA 921	ncRNA
199932	chr6	127897621	127898430	+	0	NA	intron (NM_001164687, intron 1 of 5).2	L1ME3A|LINE|L1	3056	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
86130	chr16	57683251	57683550	+	0	NA	intron (NM_170776, intron 8 of 11)	MER51D|LTR|ERV1	-11406	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
198222	chr6	98836051	98836150	+	0	NA	exon (NM_005604, exon 1 of 1)	exon (NM_005604, exon 1 of 1)	1526	NM_005604	5454		NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
72770	chr15	39785051	39785650	+	0	NA	non-coding (NR_135665, exon 1 of 1)	non-coding (NR_135665, exon 1 of 1)	2444	NR_135665	105370941		NR_135665	ENSG00000261136	LOC105370941	-	uncharacterized LOC105370941	ncRNA
57116	chr12	121124351	121124650	+	0	NA	Intergenic	Intergenic	-8376	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
73584	chr15	44530171	44531150	+	0	NA	Intergenic	Intergenic	6240	NR_034171	645212		NR_034170	ENSG00000179523	EIF3J-DT	EIF3J-AS1	EIF3J divergent transcript	ncRNA
77786	chr15	86616801	86617000	+	0	NA	intron (NM_152336, intron 22 of 24)	intron (NM_152336, intron 22 of 24)	-299932	NR_046012	727915		NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
210892	chr7	101173271	101173430	+	0	NA	exon (NM_198571, exon 3 of 4)	exon (NM_198571, exon 3 of 4)	5886	NM_001369695	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
81242	chr16	4603321	4604180	+	0	NA	Intergenic	Intergenic	11138	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
149126	chr21	17678971	17679500	+	0	NA	Intergenic	Intergenic	-66334	NM_001130914	10950		NM_006806	ENSG00000154640	BTG3	ANA|ANA/BTG3|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding
179717	chr5	53251	53950	+	0	NA	Intergenic	CpG	-38568	NM_052909	153478		NM_052909	ENSG00000153404	PLEKHG4B	ARHGEF48	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
32121	chr10	101226551	101227750	+	0	NA	3' UTR (NM_006562, exon 2 of 2)	3' UTR (NM_006562, exon 2 of 2)	1810	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
176664	chr4	100094601	100094900	+	0	NA	Intergenic	L2b|LINE|L2	-95283	NR_125924	101929353		NR_125924	ENSG00000249710	DDIT4L-AS1	-	DDIT4L antisense RNA 1	ncRNA
133404	chr2	118843151	118843730	+	0	NA	intron (NM_001426, intron 1 of 1)	intron (NM_001426, intron 1 of 1)	4208	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
180056	chr5	1081051	1081350	+	0	NA	intron (NM_006598, intron 9 of 23).2	AluJo|SINE|Alu	-18226	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
191923	chr6	15517551	15517850	+	0	NA	intron (NM_001267040, intron 17 of 17)	intron (NM_001267040, intron 17 of 17)	145328	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
169319	chr3	158847871	158848030	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	45896	NM_001167903	64747		NM_022736	ENSG00000118855	MFSD1	Minerva|SMAP4	major facilitator superfamily domain containing 1	protein-coding
67777	chr14	73742871	73743030	+	0	NA	intron (NM_001043318, intron 1 of 11)	MIRb|SINE|MIR	-15797	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
173027	chr4	4574901	4575900	+	0	NA	intron (NR_037888, intron 2 of 5)	CpG	-33057	NM_001346282	53407		NM_016930	ENSG00000168818	STX18	Ufe1	syntaxin 18	protein-coding
192608	chr6	26028801	26029000	+	0	NA	Intergenic	LTR7|LTR|ERV1	-1617	NM_003544	8366		NM_003544	ENSG00000278705	H4C2	H4-16|H4/I|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4FI|HIST1H4B	H4 clustered histone 2	protein-coding
217529	chr8	29256801	29257200	+	0	NA	intron (NM_015254, intron 1 of 39)	AluSz|SINE|Alu	6070	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
195761	chr6	40408771	40409730	+	0	NA	intron (NM_020737, intron 2 of 2)	intron (NM_020737, intron 2 of 2)	30913	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
36811	chr11	9665451	9665550	+	0	NA	intron (NM_001297714, intron 1 of 10)	L1ME1|LINE|L1	1423	NM_015055	23075		NM_015055	ENSG00000133789	SWAP70	HSPC321|SWAP-70	switching B cell complex subunit SWAP70	protein-coding
87860	chr16	77194251	77195050	+	0	NA	exon (NM_001286640, exon 2 of 4)	exon (NM_001286640, exon 2 of 4)	3460	NM_001286639	22879		NM_014940	ENSG00000103111	MON1B	HSRG1|SAND2|SRG1	MON1 homolog B, secretory trafficking associated	protein-coding
158357	chr22	50464051	50464530	+	0	NA	intron (NM_002972, intron 15 of 40)	intron (NM_002972, intron 15 of 40)	10745	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
146988	chr20	53215121	53215730	+	0	NA	intron (NM_001193421, intron 1 of 2)	intron (NM_001193421, intron 1 of 2)	30142	NM_001193421	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
14688	chr1	145860971	145861200	+	0	NA	Intergenic	Intergenic	-2004	NM_006099	10401		NM_006099	ENSG00000131788	PIAS3	ZMIZ5	protein inhibitor of activated STAT 3	protein-coding
61194	chr13	49292671	49293000	+	0	NA	non-coding (NR_036439, exon 9 of 9)	non-coding (NR_036439, exon 9 of 9)	44910	NR_036439	81602		NM_030911	ENSG00000102543	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
179689	chr4	190088071	190088600	+	0	NA	Intergenic	CpG	23106	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
165581	chr3	101573591	101575300	+	0	NA	intron (NR_135231, intron 1 of 2)	CpG	265	NM_020357	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
221390	chr8	123416121	123417580	+	0	NA	promoter-TSS (NM_018024)	promoter-TSS (NM_018024)	76	NM_018024	55093		NM_018024	ENSG00000156795	NTAQ1	C8orf32|WDYHV1	N-terminal glutamine amidase 1	protein-coding
174941	chr4	49134471	49135200	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	148193	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
135153	chr2	157479471	157479830	+	0	NA	Intergenic	L1M1|LINE|L1	-35561	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
192958	chr6	27830501	27832130	+	0	NA	exon (NM_003541, exon 1 of 1)	exon (NM_003541, exon 1 of 1)	245	NM_003541	8362		NM_003541	ENSG00000273542	H4C12	H4-16|H4/d|H4C1|H4C11|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2iii|H4FD|HIST1H4K|dJ160A22.1	H4 clustered histone 12	protein-coding
131076	chr2	88754301	88754900	+	0	NA	Intergenic	Intergenic	-11302	NR_015424	645784		NR_015424	ENSG00000291127	ANKRD36BP2	-	ankyrin repeat domain 36B pseudogene 2	pseudo
200620	chr6	136785221	136785880	+	0	NA	non-coding (NR_134635, exon 2 of 2)	non-coding (NR_134635, exon 2 of 2)	1503	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
28448	chr10	49115321	49115680	+	0	NA	promoter-TSS (NM_001031746)	promoter-TSS (NM_001031746)	22	NM_144984	196740		NM_144984	ENSG00000165633	VSTM4	C10orf72	V-set and transmembrane domain containing 4	protein-coding
87895	chr16	78778121	78778550	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	678681	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19285	chr1	172778771	172779600	+	0	NA	Intergenic	Intergenic	120082	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
87401	chr16	70527271	70527930	+	0	NA	intron (NM_012426, intron 2 of 25)	intron (NM_012426, intron 2 of 25)	-1899	NR_037420	100113402		NR_037420		SNORD111B	MIR3647	small nucleolar RNA, C/D box 111B	snoRNA
36118	chr11	3093951	3094050	+	0	NA	intron (NM_145638, intron 14 of 20)	intron (NM_145638, intron 14 of 20)	-36577	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
126803	chr2	30410301	30410700	+	0	NA	Intergenic	Intergenic	-36746	NM_001304446	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
143339	chr20	25792051	25792150	+	0	NA	intron (NR_026714, intron 1 of 3)	SST1|Satellite|centr	4008	NR_027061	728882		NR_026714		FAM182B	-	family with sequence similarity 182 member B	ncRNA
177487	chr4	113952401	113952730	+	0	NA	intron (NM_001354211, intron 4 of 6)	intron (NM_001354211, intron 4 of 6)	27082	NM_001354210	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
100126	chr17	58354351	58354930	+	0	NA	TTS (NR_038410)	TTS (NR_038410)	-2439	NR_073470	6827		NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H|Supt4a	SPT4 homolog, DSIF elongation factor subunit	protein-coding
95775	chr17	38676601	38677630	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-2158	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
176763	chr4	102390521	102390780	+	0	NA	Intergenic	L1MB7|LINE|L1	-45168	NM_001135146	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
227894	chr9	93958401	93959600	+	0	NA	Intergenic	CpG	3166	NR_144455	101928040		NR_144455	ENSG00000235601	BARX1-DT	BARX1-AS1	BARX1 divergent transcript	ncRNA
179560	chr4	185192201	185192800	+	0	NA	intron (NM_020827, intron 1 of 4)	intron (NM_020827, intron 1 of 4)	11500	NM_020827	57587		NM_020827	ENSG00000164323	CFAP97	KIAA1430|hmw	cilia and flagella associated protein 97	protein-coding
45059	chr11	117054121	117054750	+	0	NA	intron (NM_001281748, intron 1 of 24)	L2c|LINE|L2	43993	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
171296	chr3	195950121	195950380	+	0	NA	Intergenic	Intergenic	40029	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
41051	chr11	65474401	65474800	+	0	NA	Intergenic	AluSz6|SINE|Alu	19314	NR_160547	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
220088	chr8	94242151	94242250	+	0	NA	Intergenic	Intergenic	20119	NM_005261	2669		NM_005261	ENSG00000164949	GEM	KIR	GTP binding protein overexpressed in skeletal muscle	protein-coding
95614	chr17	37602871	37603230	+	0	NA	intron (NM_001163544, intron 1 of 20).2	AluSz6|SINE|Alu	6368	NM_001163546	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
195490	chr6	37156921	37157380	+	0	NA	Intergenic	AluSg|SINE|Alu	-13002	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
194485	chr6	33247801	33248700	+	0	NA	Intergenic	Intergenic	-1286	NR_044997	414765		NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25	ncRNA
91082	chr17	3240921	3241380	+	0	NA	exon (NM_003552, exon 1 of 1)	exon (NM_003552, exon 1 of 1)	474	NR_145519	653166		NM_003552	ENSG00000255095	OR1D4	OR17-30	olfactory receptor family 1 subfamily D member 4	protein-coding
195083	chr6	35572001	35572400	+	0	NA	Intergenic	Intergenic	-59304	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
183639	chr5	80243971	80244130	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	11998	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
87200	chr16	69429671	69430030	+	0	NA	intron (NM_030579, intron 1 of 4)	intron (NM_030579, intron 1 of 4)	5231	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
198008	chr6	90099371	90099530	+	0	NA	intron (NM_021813, intron 4 of 8)	AluJo|SINE|Alu	197393	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
113407	chr19	9580421	9580680	+	0	NA	intron (NM_001308269, intron 1 of 4)	intron (NM_001308269, intron 1 of 4)	3954	NM_001008727	7675		NM_001008727	ENSG00000197961	ZNF121	D19S204|ZHC32|ZNF20	zinc finger protein 121	protein-coding
148426	chr20	63962121	63962930	+	0	NA	intron (NM_020713, intron 13 of 16)	CpG	-6109	NM_001353477	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
61695	chr13	74056301	74056500	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	77529	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
215935	chr8	8316901	8317150	+	0	NA	TTS (NM_001080826)	TTS (NM_001080826)	69219	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
137825	chr2	200456071	200456230	+	0	NA	intron (NM_001282743, intron 7 of 11)	MamRTE1|LINE|RTE-BovB	53918	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
12967	chr1	110888971	110889400	+	0	NA	intron (NM_001040033, intron 2 of 8)	intron (NM_001040033, intron 2 of 8)	16037	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
236420	chrX	71285671	71285830	+	0	NA	intron (NM_001145408, intron 3 of 12)	intron (NM_001145408, intron 3 of 12)	2115	NM_001145408	4841		NM_007363	ENSG00000147140	NONO	MRXS34|NMT55|NRB54|P54|P54NRB|PPP1R114	non-POU domain containing octamer binding	protein-coding
144048	chr20	33659651	33659950	+	0	NA	intron (NM_031232, intron 7 of 11)	intron (NM_031232, intron 7 of 11)	-2527	NM_080825	128864		NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
20123	chr1	192531101	192531530	+	0	NA	Intergenic	L2a|LINE|L2	-44458	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
39756	chr11	61871021	61871980	+	0	NA	Intergenic	L2b|LINE|L2	6778	NR_106804	102465446		NR_106804	ENSG00000277892	MIR6746	hsa-mir-6746	microRNA 6746	ncRNA
81035	chr16	4293901	4294400	+	0	NA	Intergenic	Intergenic	-20611	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
34343	chr10	132190921	132191180	+	0	NA	intron (NM_006426, intron 2 of 13)	intron (NM_006426, intron 2 of 13)	4102	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
123075	chr19	51380021	51380280	+	0	NA	3' UTR (NM_030657, exon 5 of 5)	3' UTR (NM_030657, exon 5 of 5)	-7496	NM_005601	4818		NM_005601	ENSG00000105374	NKG7	GIG1|GMP-17|p15-TIA-1	natural killer cell granule protein 7	protein-coding
156922	chr22	42294951	42295680	+	0	NA	Intergenic	L2a|LINE|L2	-11388	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
194618	chr6	33561271	33561430	+	0	NA	Intergenic	AluYc3|SINE|Alu	18926	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
176081	chr4	82888601	82889080	+	0	NA	intron (NM_001077206, intron 1 of 25)	intron (NM_001077206, intron 1 of 25)	2313	NM_001077207	22872		NM_014933	ENSG00000138674	SEC31A	ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1	SEC31 homolog A, COPII coat complex component	protein-coding
76820	chr15	77118821	77119180	+	0	NA	intron (NM_024776, intron 7 of 7)	intron (NM_024776, intron 7 of 7)	-47891	NM_198902	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
188528	chr5	155834271	155835030	+	0	NA	Intergenic	Intergenic	-492514	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
61660	chr13	73944771	73945350	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	188869	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
125786	chr2	23904851	23904950	+	0	NA	intron (NM_001354107, intron 1 of 28)	intron (NM_001354107, intron 1 of 28)	22223	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
95115	chr17	34991001	34992000	+	0	NA	intron (NM_013975, intron 5 of 19)	intron (NM_013975, intron 5 of 19)	10988	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
211276	chr7	102748101	102749600	+	0	NA	promoter-TSS (NM_001350987)	promoter-TSS (NM_001350987)	-102	NR_146989	222234		NM_147194	ENSG00000222011	FAM185A	-	family with sequence similarity 185 member A	protein-coding
82003	chr16	11908871	11909730	+	0	NA	intron (NM_001130007, intron 1 of 14)	intron (NM_001130007, intron 1 of 14)	6656	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
36778	chr11	9431871	9432230	+	0	NA	intron (NM_006391, intron 16 of 24)	L1ME3C|LINE|L1	3284	NR_002962	677808		NR_002962	ENSG00000201998	SNORA23	ACA23	small nucleolar RNA, H/ACA box 23	snoRNA
47907	chr12	6752401	6754280	+	0	NA	promoter-TSS (NM_005439)	promoter-TSS (NM_005439)	-199	NM_001382225	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
226306	chr9	68779201	68780600	+	0	NA	promoter-TSS (NM_138333)	promoter-TSS (NM_138333)	-165	NM_138333	116224		NM_138333	ENSG00000187866	PABIR1	C9orf42|FAM122A	PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1	protein-coding
46632	chr11	128653751	128654050	+	0	NA	Intergenic	Intergenic	-32635	NM_001271012	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
57776	chr12	122993571	122993930	+	0	NA	intron (NM_001384660, intron 14 of 25)	intron (NM_001384660, intron 14 of 25)	13690	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
53574	chr12	67662351	67662650	+	0	NA	3' UTR (NM_003583, exon 2 of 2)	3' UTR (NM_003583, exon 2 of 2)	13755	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
210968	chr7	101739921	101740180	+	0	NA	Intergenic	Intergenic	-75957	NM_181500	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
143500	chr20	31475171	31475400	+	0	NA	promoter-TSS (NM_014012)	promoter-TSS (NM_014012)	-3	NM_014012	28954		NM_014012	ENSG00000088320	REM1	GD:REM|GES	RRAD and GEM like GTPase 1	protein-coding
164772	chr3	69104401	69104800	+	0	NA	exon (NM_006407, exon 3 of 3)	exon (NM_006407, exon 3 of 3)	17995	NM_198271	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
20788	chr1	201085971	201086200	+	0	NA	intron (NM_000069, intron 7 of 43)	intron (NM_000069, intron 7 of 43)	26341	NM_000069	779		NM_000069	ENSG00000081248	CACNA1S	CACNL1A3|CCHL1A3|CMYP18|Cav1.1|DHPRM|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP	calcium voltage-gated channel subunit alpha1 S	protein-coding
21086	chr1	203322151	203322250	+	0	NA	Intergenic	MIRb|SINE|MIR	16681	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
207988	chr7	55453021	55453280	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	73730	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
43929	chr11	92321321	92321400	+	0	NA	intron (NM_001367949, intron 1 of 27)	AluY|SINE|Alu	96542	NM_001367949	120114		NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10|hFat3	FAT atypical cadherin 3	protein-coding
139915	chr2	230739751	230740050	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	26352	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
66064	chr14	58397201	58397480	+	0	NA	intron (NM_207377, intron 2 of 4)	intron (NM_207377, intron 2 of 4)	1410	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
72110	chr15	28943101	28944030	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	9561	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
52780	chr12	56691171	56692180	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-3267	NM_001282604	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
114171	chr19	11374251	11375900	+	0	NA	intron (NM_175871, intron 1 of 1)	CpG	409	NM_175871	126074		NM_175871	ENSG00000173928	SWSAP1	C19orf39|SWS1AP1|ZSWIM7AP1	SWIM-type zinc finger 7 associated protein 1	protein-coding
21273	chr1	204402371	204403200	+	0	NA	TTS (NM_032833)	TTS (NM_032833)	9032	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
170872	chr3	192890451	192890950	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	27156	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
67117	chr14	68483721	68484580	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	144637	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
176200	chr4	83548371	83548780	+	0	NA	intron (NM_001256421, intron 3 of 12)	intron (NM_001256421, intron 3 of 12)	12467	NM_032717	84803		NM_032717	ENSG00000138678	GPAT3	AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1	glycerol-3-phosphate acyltransferase 3	protein-coding
153501	chr22	26489771	26490130	+	0	NA	intron (NM_001013694, intron 4 of 6)	intron (NM_001013694, intron 4 of 6)	6073	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
36941	chr11	10929651	10929950	+	0	NA	Intergenic	Intergenic	71583	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
202776	chr6	159064651	159065450	+	0	NA	Intergenic	Intergenic	-19898	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
134123	chr2	134130701	134131130	+	0	NA	intron (NM_001371457, intron 1 of 16)	LTR12C|LTR|ERV1	3790	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
107524	chr18	48389151	48389250	+	0	NA	intron (NM_001371287, intron 1 of 5)	(CT)n|Simple_repeat|Simple_repeat	-13573	NM_001371290	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
124452	chr19	58513471	58514800	+	0	NA	exon (NM_001316978, exon 3 of 3)	exon (NM_001316978, exon 3 of 3)	-2070	NM_001321196	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
79236	chr16	383141	384400	+	0	NA	intron (NR_024453, intron 2 of 2)	L1ME4b|LINE|L1	1529	NR_024453	100134368		NR_024453	ENSG00000293232	LOC100134368	-	uncharacterized LOC100134368	ncRNA
210996	chr7	102282971	102283130	+	0	NA	exon (NM_181500, exon 23 of 23)	exon (NM_181500, exon 23 of 23)	-2091	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
89011	chr16	88018471	88018630	+	0	NA	exon (NM_001173543, exon 7 of 14)	exon (NM_001173543, exon 7 of 14)	41397	NM_001384940	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
175710	chr4	77159701	77159900	+	0	NA	intron (NM_004354, intron 3 of 7)	intron (NM_004354, intron 3 of 7)	2593	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
118376	chr19	35721021	35721900	+	0	NA	exon (NM_014727, exon 3 of 37)	exon (NM_014727, exon 3 of 37)	3457	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
10833	chr1	77950151	77950480	+	0	NA	intron (NR_146539, intron 18 of 22)	AluJb|SINE|Alu	28757	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
231879	chr9	132994621	132994900	+	0	NA	Intergenic	Intergenic	15484	NM_001377305	8328		NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding
101877	chr17	74288921	74289380	+	0	NA	intron (NM_023036, intron 4 of 13)	intron (NM_023036, intron 4 of 13)	14916	NM_023036	64446		NM_023036	ENSG00000171595	DNAI2	CILD9|DIC2|oda6	dynein axonemal intermediate chain 2	protein-coding
33785	chr10	123132621	123133530	+	0	NA	Intergenic	CpG	-2895	NM_001105574	340784		NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
166106	chr3	111018851	111019300	+	0	NA	Intergenic	L1PA2|LINE|L1	50884	NR_045114	100506555		NR_045114		NECTIN3-AS1	PVRL3-AS1	NECTIN3 antisense RNA 1	ncRNA
141559	chr2	241510671	241510900	+	0	NA	Intergenic	Intergenic	-1213	NM_001282305	10494		NM_006374	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
183701	chr5	80959751	80961360	+	0	NA	5' UTR (NM_006909, exon 1 of 27)	5' UTR (NM_006909, exon 1 of 27)	192	NM_006909	5924		NM_006909	ENSG00000113319	RASGRF2	GRF2|RAS-GRF2	Ras protein specific guanine nucleotide releasing factor 2	protein-coding
48960	chr12	12846701	12847300	+	0	NA	Intergenic	AluSz6|SINE|Alu	-28477	NR_003932	387841		NR_003932	ENSG00000234498	RPL13AP20	HANR|RPL13A_9_1211	ribosomal protein L13a pseudogene 20	pseudo
99139	chr17	49323021	49323680	+	0	NA	intron (NR_135579, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	-34896	NR_106745	102465137		NR_106745	ENSG00000273500	MIR6129	hsa-mir-6129	microRNA 6129	ncRNA
92	chr1	357171	357430	+	0	NA	Intergenic	Intergenic	94378	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
199836	chr6	127747821	127748730	+	0	NA	intron (NM_001010923, intron 4 of 5).2	MSTB2|LTR|ERVL-MaLR	106913	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
129365	chr2	68782651	68783280	+	0	NA	intron (NM_001166277, intron 3 of 9)	intron (NM_001166277, intron 3 of 9)	8055	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
41763	chr11	66701371	66702130	+	0	NA	intron (NM_006946, intron 15 of 37)	intron (NM_006946, intron 15 of 37)	-23863	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
132592	chr2	107859371	107859530	+	0	NA	exon (NM_182588, exon 11 of 23)	exon (NM_182588, exon 11 of 23)	32558	NM_182588	285190		NM_182588	ENSG00000196862	RGPD4	RGP4	RANBP2 like and GRIP domain containing 4	protein-coding
199511	chr6	118704071	118704930	+	0	NA	intron (NM_001178035, intron 1 of 13)	AluSx1|SINE|Alu	5575	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
103391	chr17	78164801	78165250	+	0	NA	intron (NM_001163075, intron 4 of 4)	intron (NM_001163075, intron 4 of 4)	-3520	NM_001320523	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
8208	chr1	39655631	39655830	+	0	NA	Intergenic	MamRep38|DNA|hAT	-16087	NM_014571	26508		NM_014571	ENSG00000163909	HEYL	HESR3|HEY3|HRT3|bHLHb33	hes related family bHLH transcription factor with YRPW motif like	protein-coding
68418	chr14	81187601	81188180	+	0	NA	intron (NM_015859, intron 7 of 8)	L1MB5|LINE|L1	14944	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
80244	chr16	2204251	2204350	+	0	NA	Intergenic	AluSz|SINE|Alu	-1154	NM_001199173	64223		NM_022372	ENSG00000167965	MLST8	GBL|GbetaL|LST8|POP3|WAT1	MTOR associated protein, LST8 homolog	protein-coding
48995	chr12	13233921	13234350	+	0	NA	Intergenic	Intergenic	37409	NM_001423	2012		NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
82669	chr16	19601351	19601650	+	0	NA	intron (NR_158160, intron 8 of 28)	intron (NR_158160, intron 8 of 28)	45797	NM_001300743	57020		NM_020314	ENSG00000103544	VPS35L	C16orf62|EC97|RTSC3	VPS35 endosomal protein sorting factor like	protein-coding
147112	chr20	53917851	53917950	+	0	NA	Intergenic	Intergenic	-42191	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
40541	chr11	64309701	64310450	+	0	NA	intron (NM_004451, intron 2 of 6)	MIR|SINE|MIR	3848	NM_001282450	2101		NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen related receptor alpha	protein-coding
60192	chr13	40377721	40378200	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	103046	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
47336	chr12	1810571	1810930	+	0	NA	intron (NM_172364, intron 27 of 37)	(TG)n|Simple_repeat|Simple_repeat	-9517	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
228419	chr9	99296401	99296800	+	0	NA	Intergenic	CpG	74318	NM_006808	10952		NM_006808	ENSG00000106803	SEC61B	-	SEC61 translocon subunit beta	protein-coding
199497	chr6	118665021	118665750	+	0	NA	intron (NM_001178035, intron 1 of 13)	AluJb|SINE|Alu	-13794	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
15848	chr1	151401321	151401650	+	0	NA	intron (NM_002796, intron 5 of 6)	intron (NM_002796, intron 5 of 6)	1912	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
88267	chr16	82936901	82937360	+	0	NA	intron (NM_001220490, intron 2 of 12)	intron (NM_001220490, intron 2 of 12)	53168	NR_110937	101928417		NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
167790	chr3	133478771	133478930	+	0	NA	intron (NR_135276, intron 1 of 4)	intron (NR_135276, intron 1 of 4)	12296	NR_135277	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
175567	chr4	75640971	75641730	+	0	NA	Intergenic	AluSc8|SINE|Alu	-10822	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
137547	chr2	197227871	197228530	+	0	NA	intron (NM_153697, intron 1 of 9)	MIRb|SINE|MIR	30209	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
207549	chr7	44843521	44843880	+	0	NA	intron (NM_201516, intron 1 of 3)	AluSz|SINE|Alu	4387	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
195389	chr6	36756851	36756950	+	0	NA	intron (NM_001376889, intron 13 of 21)	L2b|LINE|L2	500	NM_001376891	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
158728	chr3	8629071	8629790	+	0	NA	intron (NM_001256748, intron 7 of 11)	intron (NM_001256748, intron 7 of 11)	15368	NR_046358	51066		NM_015931	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog	protein-coding
156044	chr22	39975321	39976000	+	0	NA	Intergenic	L2b|LINE|L2	-19294	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
197699	chr6	85669471	85670750	+	0	NA	Intergenic	L2a|LINE|L2	7258	NR_002743	26799		NR_002743		SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
178893	chr4	157636001	157636200	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	63610	NR_026992	340017		NR_026992	ENSG00000234111	LINC02433	-	long intergenic non-protein coding RNA 2433	ncRNA
167461	chr3	129103971	129104530	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	17554	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
17735	chr1	158961751	158962050	+	0	NA	intron (NM_198930, intron 7 of 7)	L1PA15|LINE|L1	30348	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
110146	chr19	1615271	1615430	+	0	NA	exon (NM_001351778, exon 18 of 20)	exon (NM_001351778, exon 18 of 20)	-9888	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
181930	chr5	54895071	54895230	+	0	NA	Intergenic	Intergenic	90443	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
15141	chr1	148795471	148795830	+	0	NA	Intergenic	LTR79|LTR|ERVL	-3681	NR_158170	100996517		NR_158170		SEC22B3P	SEC22B3	SEC22 homolog B3, pseudogene	pseudo
11149	chr1	86833551	86834080	+	0	NA	Intergenic	Intergenic	80311	NM_004261	9403		NM_004261	ENSG00000183291	SELENOF	SEP15	selenoprotein F	protein-coding
165233	chr3	73012371	73012750	+	0	NA	intron (NM_001318025, intron 2 of 7)	AluYh3|SINE|Alu	15749	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
221489	chr8	124494271	124494880	+	0	NA	intron (NM_032026, intron 10 of 11)	AluSc8|SINE|Alu	14001	NR_106903	102466200		NR_106903	ENSG00000284087	MIR6844	hsa-mir-6844	microRNA 6844	ncRNA
210640	chr7	100467721	100468480	+	0	NA	intron (NM_001303043, intron 3 of 4)	intron (NM_001303043, intron 3 of 4)	-3840	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
63550	chr14	20330751	20331050	+	0	NA	intron (NM_182852, intron 1 of 7)	intron (NM_182852, intron 1 of 7)	2379	NM_021178	57820		NM_021178	ENSG00000100814	CCNB1IP1	C14orf18|HEI10	cyclin B1 interacting protein 1	protein-coding
92374	chr17	8222801	8224180	+	0	NA	intron (NR_026951, intron 1 of 2)	intron (NR_026951, intron 1 of 2)	553	NR_026951	284029		NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324|RNA00324|TP53LC03	long intergenic non-protein coding RNA 324	ncRNA
132747	chr2	109611651	109612150	+	0	NA	intron (NM_001321501, intron 1 of 9)	L1MD1|LINE|L1	1767	NM_001321515	151011		NM_144710	ENSG00000186522	SEPTIN10	SEPT10|Septin-10	septin 10	protein-coding
129607	chr2	70101921	70102380	+	0	NA	Intergenic	AluSx|SINE|Alu	14673	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
202749	chr6	159032951	159033050	+	0	NA	Intergenic	Intergenic	9353	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
146451	chr20	49686171	49686530	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	27528	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
213268	chr7	134644001	134644400	+	0	NA	Intergenic	Intergenic	-2579	NM_001293085	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
236952	chrX	100973001	100973200	+	0	NA	intron (NM_001162491, intron 1 of 7)	SVA_F|Retroposon|SVA	3392	NR_103708	392509		NM_001162491	ENSG00000174225	ARL13A	ARL13|dJ341D10.2	ADP ribosylation factor like GTPase 13A	protein-coding
11347	chr1	89605871	89606030	+	0	NA	Intergenic	Intergenic	26944	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
160416	chr3	28268921	28269180	+	0	NA	intron (NM_001331189, intron 3 of 4)	Tigger7|DNA|TcMar-Tigger	27431	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
162590	chr3	48684571	48684730	+	0	NA	intron (NM_184231, intron 1 of 12)	intron (NM_184231, intron 1 of 12)	1265	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
89640	chr16	89333371	89334300	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	13383	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
103436	chr17	78260871	78261230	+	0	NA	TTS (NR_073178)	TTS (NR_073178)	12734	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
219980	chr8	89815271	89815430	+	0	NA	Intergenic	Intergenic	57534	NM_003821	8767		NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor interacting serine/threonine kinase 2	protein-coding
176814	chr4	102545271	102545630	+	0	NA	intron (NM_001382625, intron 6 of 24)	MIR|SINE|MIR	-42964	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
55854	chr12	109154221	109155650	+	0	NA	intron (NM_001093, intron 2 of 52)	intron (NM_001093, intron 2 of 52)	38348	NM_001093	32		NM_001093	ENSG00000076555	ACACB	ACACbeta|ACC-beta|ACC2|ACCB|ACCbeta|HACC275	acetyl-CoA carboxylase beta	protein-coding
129957	chr2	73938901	73939950	+	0	NA	intron (NM_080916, intron 2 of 6)	intron (NM_080916, intron 2 of 6)	12545	NM_080918	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
205312	chr7	12210571	12212200	+	0	NA	promoter-TSS (NM_018374)	promoter-TSS (NM_018374)	91	NM_001134232	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
30842	chr10	86506571	86507100	+	0	NA	intron (NM_015045, intron 2 of 18)	intron (NM_015045, intron 2 of 18)	14949	NM_001318328	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
77761	chr15	85766401	85766600	+	0	NA	intron (NM_022480, intron 2 of 2)	intron (NM_022480, intron 2 of 2)	4078	NR_031682	100302121		NR_031682	ENSG00000221634	MIR1276	MIRN1276|hsa-mir-1276|mir-1276	microRNA 1276	ncRNA
236602	chrX	74015401	74015630	+	0	NA	intron (NR_024582, intron 3 of 4)	L1MA5|LINE|L1	71191	NR_024582	554203		NR_024582	ENSG00000225470	JPX	DCBALD06|ENOX|LINC00183|NCRNA00183	JPX transcript, XIST activator	ncRNA
192481	chr6	24948851	24949950	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-13440	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
118043	chr19	34252301	34252850	+	0	NA	Intergenic	AluY|SINE|Alu	-1979	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
106254	chr18	12271671	12272280	+	0	NA	intron (NM_001318383, intron 3 of 4)	intron (NM_001318383, intron 3 of 4)	17614	NR_134607	1149		NM_001279	ENSG00000176194	CIDEA	CIDE-A	cell death inducing DFFA like effector a	protein-coding
127409	chr2	42101901	42103550	+	0	NA	Intergenic	Intergenic	54704	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
6004	chr1	27009151	27009500	+	0	NA	intron (NM_052943, intron 1 of 1)	MIRb|SINE|MIR	3525	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
62284	chr13	98870851	98870950	+	0	NA	intron (NM_001318849, intron 27 of 54)	L1MC5a|LINE|L1	38816	NR_046663	100874096		NR_046663	ENSG00000229918	DOCK9-AS1	-	DOCK9 antisense RNA 1	ncRNA
156450	chr22	41245171	41245630	+	0	NA	3' UTR (NM_001317930, exon 16 of 16)	3' UTR (NM_001317930, exon 16 of 16)	-4469	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
211249	chr7	102663471	102663630	+	0	NA	intron (NM_032959, intron 4 of 8)	intron (NM_032959, intron 4 of 8)	8185	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
82178	chr16	14931051	14931550	+	0	NA	TTS (NR_106828)	TTS (NR_106828)	480	NR_107060	102465908		NR_107060	ENSG00000277698	MIR6770-2	hsa-mir-6770-2	microRNA 6770-2	ncRNA
101371	chr17	67245901	67247750	+	0	NA	intron (NR_136398, intron 1 of 3)	intron (NR_136398, intron 1 of 3)	-1629	NM_001330447	9931		NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
76738	chr15	76330201	76330400	+	0	NA	Intergenic	Intergenic	-6473	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
112175	chr19	5659471	5659630	+	0	NA	intron (NM_001320571, intron 12 of 18)	AluY|SINE|Alu	20688	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
69802	chr14	99201271	99202030	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	70547	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
13116	chr1	111631751	111632250	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-11602	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
153386	chr22	24592251	24592350	+	0	NA	intron (NM_207644, intron 1 of 3)	intron (NM_207644, intron 1 of 3)	773	NM_207644	388886		NM_207644	ENSG00000178026	LRRC75B	C22orf36|FAM211B	leucine rich repeat containing 75B	protein-coding
3900	chr1	17125721	17126180	+	0	NA	Intergenic	Intergenic	-6499	NM_007365	11240		NM_007365	ENSG00000117115	PADI2	PAD-H19|PAD2|PDI2	peptidyl arginine deiminase 2	protein-coding
218324	chr8	42788451	42789280	+	0	NA	Intergenic	L1PB4|LINE|L1	-20079	NM_001199279	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
136059	chr2	172735271	172735630	+	0	NA	promoter-TSS (NM_001375875)	promoter-TSS (NM_001375875)	-395	NM_001375872	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
206057	chr7	27158001	27158680	+	0	NA	Intergenic	Intergenic	-1665	NM_006896	3204		NM_006896	ENSG00000122592	HOXA7	ANTP|HOX1|HOX1.1|HOX1A	homeobox A7	protein-coding
26898	chr10	26443051	26443230	+	0	NA	intron (NM_019043, intron 2 of 14)	AluSq2|SINE|Alu	4799	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
227138	chr9	86279001	86279450	+	0	NA	intron (NM_030940, intron 1 of 3)	intron (NM_030940, intron 1 of 3)	3313	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
226581	chr9	72952971	72953150	+	0	NA	promoter-TSS (NM_000689)	promoter-TSS (NM_000689)	-7	NM_000689	216		NM_000689	ENSG00000165092	ALDH1A1	ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1	aldehyde dehydrogenase 1 family member A1	protein-coding
233899	chrX	1600571	1600830	+	0	NA	non-coding (NR_027383, exon 6 of 6)	non-coding (NR_027383, exon 6 of 6)	5245	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
103897	chr17	79802671	79803350	+	0	NA	Intergenic	CpG-11773	-5933	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
99337	chr17	49850901	49852800	+	0	NA	Intergenic	CpG	-3833	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
82871	chr16	21537021	21537280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-16706	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
137792	chr2	199850601	199851550	+	0	NA	promoter-TSS (NM_001363886)	promoter-TSS (NM_001363886)	98	NM_001350855	348751		NM_001350853	ENSG00000226124	FTCDNL1	FONG	formiminotransferase cyclodeaminase N-terminal like	protein-coding
194992	chr6	35386901	35387500	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	44642	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
116628	chr19	18298801	18299000	+	0	NA	Intergenic	AluSx|SINE|Alu	16823	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
26191	chr10	14545251	14545650	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	3187	NM_001320739	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
76569	chr15	75274221	75274830	+	0	NA	Intergenic	Intergenic	-8316	NM_001145224	653643		NM_001145224	ENSG00000140478	GOLGA6D	-	golgin A6 family member D	protein-coding
68850	chr14	91294721	91294980	+	0	NA	intron (NM_001080414, intron 22 of 29)	AluSq|SINE|Alu	-40970	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
198464	chr6	106167071	106167480	+	0	NA	Intergenic	Intergenic	68334	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
25970	chr10	11697971	11698130	+	0	NA	Intergenic	L2a|LINE|L2	-44332	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
6494	chr1	28449901	28450580	+	0	NA	intron (NM_023923, intron 1 of 12)	intron (NM_023923, intron 1 of 12)	12090	NM_023923	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
31914	chr10	100482301	100483300	+	0	NA	exon (NM_003393, exon 6 of 6)	exon (NM_003393, exon 6 of 6)	19791	NM_003393	7479		NM_003393	ENSG00000075290	WNT8B	-	Wnt family member 8B	protein-coding
136353	chr2	176079621	176080350	+	0	NA	TTS (NM_001080458)	TTS (NM_001080458)	3977	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
167338	chr3	128750301	128750700	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSq2|SINE|Alu	24317	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
211027	chr7	102416651	102416750	+	0	NA	intron (NR_038967, intron 8 of 8)	AluJo|SINE|Alu	-10845	NR_031669	100313829		NR_031669	ENSG00000221510	MIR548O	MIRN548O	microRNA 548o	ncRNA
101908	chr17	74442821	74443580	+	0	NA	intron (NM_022036, intron 2 of 3)	intron (NM_022036, intron 2 of 3)	9503	NM_018653	55890		NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding
235984	chrX	53831901	53832200	+	0	NA	Intergenic	L1MA7|LINE|L1	-145331	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
225067	chr9	33261901	33262100	+	0	NA	intron (NM_001349299, intron 2 of 6)	L2b|LINE|L2	2708	NM_004323	573		NM_004323	ENSG00000107262	BAG1	BAG-1|HAP|RAP46	BAG cochaperone 1	protein-coding
110179	chr19	1666551	1666850	+	0	NA	Intergenic	AluY|SINE|Alu	-14085	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
10180	chr1	61387451	61387850	+	0	NA	intron (NM_001145512, intron 8 of 11)	L2c|LINE|L2	-134132	NR_104180	645030		NR_104180	ENSG00000237853	NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
14332	chr1	143910571	143910930	+	0	NA	Intergenic	LTR65|LTR|ERV1	-4773	NM_001372105	440686		NM_001025303	ENSG00000273213	H3-7	H3-2|H3.7|HIST2H3PS2|p06	H3.7 histone (putative)	protein-coding
56453	chr12	114662771	114662930	+	0	NA	Intergenic	Intergenic	21325	NM_016569	6926		NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box transcription factor 3	protein-coding
124920	chr2	8522571	8523200	+	0	NA	Intergenic	Intergenic	60907	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
28950	chr10	63224751	63224850	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSg|SINE|Alu	44423	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
130448	chr2	85431901	85432100	+	0	NA	intron (NM_201594, intron 12 of 20)	intron (NM_201594, intron 12 of 20)	13069	NM_201594								
95534	chr17	36594821	36595400	+	0	NA	exon (NM_024308, exon 2 of 7)	exon (NM_024308, exon 2 of 7)	3231	NM_024308	79154		NM_024308	ENSG00000278535	DHRS11	ARPG836|SDR24C1|spDHRS11	dehydrogenase/reductase 11	protein-coding
65870	chr14	55071751	55072780	+	0	NA	Intergenic	Intergenic	20618	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
2484	chr1	9671871	9672030	+	0	NA	TTS (NR_126366)	TTS (NR_126366)	15624	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
67319	chr14	69622421	69622680	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	10954	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
57256	chr12	121578551	121579700	+	0	NA	intron (NM_032590, intron 1 of 22)	CpG-6115	1121	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
207576	chr7	44949371	44949530	+	0	NA	Intergenic	Intergenic	29565	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
102724	chr17	76193651	76194300	+	0	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	46518	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
101658	chr17	68287401	68287950	+	0	NA	intron (NM_001174166, intron 1 of 6)	intron (NM_001174166, intron 1 of 6)	3452	NM_001174166	9120		NM_004694	ENSG00000108932	SLC16A6	MCT6|MCT7	solute carrier family 16 member 6	protein-coding
108455	chr18	70433901	70434250	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-49484	NR_110764	101060542		NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
29902	chr10	73154651	73154950	+	0	NA	intron (NM_007265, intron 5 of 13)	AluSc8|SINE|Alu	13208	NM_007265	11319		NM_007265	ENSG00000122882	ECD	GCR2|HSGT1|SGT1	ecdysoneless cell cycle regulator	protein-coding
105913	chr18	3447521	3448700	+	0	NA	promoter-TSS (NM_001374396)	promoter-TSS (NM_001374396)	-321	NM_001374396	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
45580	chr11	118877981	118878880	+	0	NA	Intergenic	AluJb|SINE|Alu	-5462	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
66998	chr14	67355851	67356150	+	0	NA	intron (NM_015994, intron 1 of 8)	AluJb|SINE|Alu	3804	NM_015994	51382		NM_015994	ENSG00000100554	ATP6V1D	ATP6M|VATD|VMA8	ATPase H+ transporting V1 subunit D	protein-coding
29371	chr10	69802471	69802830	+	0	NA	exon (NM_080802, exon 1 of 37)	exon (NM_080802, exon 1 of 37)	744	NM_080805	1305		NM_005203	ENSG00000197467	COL13A1	CMS19|COLXIIIA1	collagen type XIII alpha 1 chain	protein-coding
72451	chr15	32314821	32315630	+	0	NA	intron (NR_038253, intron 2 of 7)	CpG	27452	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
21753	chr1	206899651	206899750	+	0	NA	intron (NM_001185156, intron 3 of 6)	MIRc|SINE|MIR	2257	NM_006850	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
46415	chr11	126359771	126360130	+	0	NA	intron (NM_001348397, intron 2 of 11)	intron (NM_001348397, intron 2 of 11)	3938	NM_001348397	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
135528	chr2	162220971	162221430	+	0	NA	intron (NM_004460, intron 6 of 25)	intron (NM_004460, intron 6 of 25)	22245	NM_001291807	2191		NM_004460	ENSG00000078098	FAP	DPPIV|FAPA|FAPalpha|SIMP	fibroblast activation protein alpha	protein-coding
105282	chr17	82477771	82477930	+	0	NA	intron (NM_031968, intron 5 of 11)	intron (NM_031968, intron 5 of 11)	19109	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
200745	chr6	137791521	137792180	+	0	NA	Intergenic	Intergenic	-52813	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
177435	chr4	112523821	112524380	+	0	NA	intron (NR_161159, intron 1 of 3)	CpG	-7920	NM_024019	63973		NM_024019	ENSG00000178403	NEUROG2	Atoh4|Math4A|NGN2|bHLHa8|ngn-2	neurogenin 2	protein-coding
213296	chr7	134997171	134997330	+	0	NA	intron (NM_178563, intron 4 of 16)	MER1B|DNA|hAT-Charlie	10742	NM_001345851	340351		NM_178563	ENSG00000146856	AGBL3	CCP3	AGBL carboxypeptidase 3	protein-coding
58874	chr13	18213021	18213480	+	0	NA	intron (NR_027278, intron 1 of 7)	HSATI|Satellite|Satellite	17953	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
189453	chr5	173008001	173008200	+	0	NA	intron (NM_003945, intron 2 of 3)	LTR41B|LTR|ERVL	-12626	NR_002988	677841		NR_002988	ENSG00000212402	SNORA74B	U19-2	small nucleolar RNA, H/ACA box 74B	snoRNA
39083	chr11	47998071	47998650	+	0	NA	intron (NM_002843, intron 1 of 24)	L1MA4|LINE|L1	17801	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
8626	chr1	41681071	41681630	+	0	NA	intron (NM_001127714, intron 1 of 7)	AluJo|SINE|Alu	-196667	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
121095	chr19	45913101	45913300	+	0	NA	TTS (NM_001029861)	TTS (NM_001029861)	1578	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
215502	chr7	158650651	158650950	+	0	NA	intron (NM_001281932, intron 25 of 28)	intron (NM_001281932, intron 25 of 28)	54004	NM_001281932	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
85767	chr16	56910721	56910980	+	0	NA	intron (NM_001126107, intron 25 of 25)	intron (NM_001126107, intron 25 of 25)	6586	NR_106923	102466752		NR_106923	ENSG00000283471	MIR6863	hsa-mir-6863	microRNA 6863	ncRNA
111224	chr19	3503901	3504100	+	0	NA	Intergenic	(CCTTTTC)n|Simple_repeat|Simple_repeat	-2311	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
36258	chr11	3780751	3780850	+	0	NA	intron (NR_157590, intron 2 of 31)	AluSz|SINE|Alu	16746	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
99906	chr17	56910151	56910950	+	0	NA	intron (NM_005082, intron 1 of 8)	intron (NM_005082, intron 1 of 8)	3499	NM_005082	7706		NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
231846	chr9	132769901	132771630	+	0	NA	intron (NM_001371771, intron 11 of 12)	intron (NM_001371771, intron 11 of 12)	100301	NM_012204	9329		NM_012204	ENSG00000125484	GTF3C4	KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA	general transcription factor IIIC subunit 4	protein-coding
196265	chr6	42932171	42932650	+	0	NA	intron (NR_134881, intron 2 of 7)	intron (NR_134881, intron 2 of 7)	2930	NR_134891	107080644		NM_001318856		CNPY3-GNMT	-	CNPY3-GNMT readthrough	protein-coding
197970	chr6	89999351	89999450	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	104931	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
125264	chr2	10439301	10440930	+	0	NA	3' UTR (NM_001287188, exon 12 of 12)	3' UTR (NM_001287188, exon 12 of 12)	6734	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
118349	chr19	35639221	35640450	+	0	NA	Intergenic	Intergenic	-1910	NM_001300974	2116		NM_014209	ENSG00000105672	ETV2	ER71|ETSRP71	ETS variant transcription factor 2	protein-coding
208271	chr7	65768851	65769500	+	0	NA	intron (NR_038378, intron 1 of 7)	intron (NR_038378, intron 1 of 7)	1635	NR_038378	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
134770	chr2	147331801	147332230	+	0	NA	Intergenic	Intergenic	-512502	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
222272	chr8	133292751	133294000	+	0	NA	intron (NM_001374844, intron 1 of 15)	intron (NM_001374844, intron 1 of 15)	3315	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
238758	chrX	154346651	154348130	+	0	NA	Intergenic	Intergenic	27244	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
102623	chr17	76001521	76001780	+	0	NA	intron (NM_001258, intron 2 of 7)	intron (NM_001258, intron 2 of 7)	744	NM_001258	1018		NM_001258	ENSG00000250506	CDK3	-	cyclin dependent kinase 3	protein-coding
39276	chr11	58451521	58451780	+	0	NA	Intergenic	Intergenic	-9414	NM_001004733	390191		NM_001004733	ENSG00000172362	OR5B12	OR11-241|OR5B12P|OR5B16|OST743	olfactory receptor family 5 subfamily B member 12	protein-coding
158539	chr3	3800521	3800780	+	0	NA	intron (NM_020873, intron 1 of 1)	CpG	225	NR_149025	100130207		NR_149025	ENSG00000144455	LOC100130207	-	uncharacterized LOC100130207	ncRNA
17078	chr1	156123301	156124200	+	0	NA	intron (NM_170707, intron 1 of 11)	intron (NM_170707, intron 1 of 11)	-2420	NM_001282624	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
188865	chr5	159331301	159331980	+	0	NA	non-coding (NR_037889, exon 1 of 5)	non-coding (NR_037889, exon 1 of 5)	122	NR_037889	285626		NR_037889	ENSG00000249738	LOC285626	-	uncharacterized LOC285626	ncRNA
176257	chr4	86981471	86982180	+	0	NA	intron (NM_001166693, intron 2 of 20)	Tigger6a|DNA|TcMar-Tigger	-25163	NM_001313959	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
33800	chr10	123147671	123148700	+	0	NA	promoter-TSS (NM_005519)	promoter-TSS (NM_005519)	63	NM_005519	3167		NM_005519	ENSG00000188816	HMX2	H6L|Nkx5-2	H6 family homeobox 2	protein-coding
161058	chr3	38028021	38028330	+	0	NA	intron (NM_006225, intron 1 of 14)	intron (NM_006225, intron 1 of 14)	1467	NM_006225	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
194274	chr6	32622511	32623840	+	0	NA	Intergenic	Intergenic	-14231	NM_002122	3117		NM_002122	ENSG00000196735	HLA-DQA1	CELIAC1|DQ-A1|DQA1|HLA-DQA|HLA-DQA1*|HLA-DQB1	major histocompatibility complex, class II, DQ alpha 1	protein-coding
231391	chr9	130756771	130757030	+	0	NA	intron (NM_007313, intron 1 of 10)	intron (NM_007313, intron 1 of 10)	43019	NM_007313	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
170428	chr3	185768521	185768800	+	0	NA	promoter-TSS (NR_049838).6	promoter-TSS (NR_049838).6	-756	NR_049838	100847078		NR_049838	ENSG00000265470	MIR548AQ	-	microRNA 548aq	ncRNA
142733	chr20	10219451	10219900	+	0	NA	promoter-TSS (NR_040710)	promoter-TSS (NR_040710)	-169	NR_040710	100131208		NR_040710	ENSG00000227906	SNAP25-AS1	-	SNAP25 antisense RNA 1	ncRNA
116386	chr19	17946121	17946720	+	0	NA	Intergenic	Intergenic	-4882	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
92864	chr17	16383351	16384230	+	0	NA	Intergenic	AluSz|SINE|Alu	2325	NM_001281717	7314		NM_018955	ENSG00000170315	UBB	HEL-S-50	ubiquitin B	protein-coding
227027	chr9	83956001	83957650	+	0	NA	promoter-TSS (NM_032307)	promoter-TSS (NM_032307)	-83	NM_032307	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
65025	chr14	39114031	39115380	+	0	NA	intron (NM_003616, intron 1 of 9)	intron (NM_003616, intron 1 of 9)	382	NM_003616	8487		NM_003616	ENSG00000092208	GEMIN2	SIP1|SIP1-delta	gem nuclear organelle associated protein 2	protein-coding
16488	chr1	154756471	154756630	+	0	NA	intron (NM_001204087, intron 3 of 8)	L2a|LINE|L2	103326	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
236819	chrX	79175101	79175550	+	0	NA	TTS (NM_032553)	TTS (NM_032553)	30637	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
207772	chr7	50164251	50165350	+	0	NA	Intergenic	Intergenic	68917	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
106817	chr18	23993851	23994030	+	0	NA	TTS (NR_110796)	TTS (NR_110796)	1053	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
110222	chr19	1758951	1759450	+	0	NA	intron (NM_001080488, intron 1 of 1)	intron (NM_001080488, intron 1 of 1)	5694	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
143557	chr20	31608371	31609150	+	0	NA	Intergenic	CpG	1574	NR_036161	100422904		NR_036161	ENSG00000264395	MIR3193	-	microRNA 3193	ncRNA
164988	chr3	71319471	71319830	+	0	NA	intron (NM_001349340, intron 3 of 19)	L2b|LINE|L2	-14879	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
137568	chr2	197253651	197253980	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	48704	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
175548	chr4	75498101	75498300	+	0	NA	intron (NR_037914, intron 3 of 8)	L1MA4|LINE|L1	11096	NR_103725	25898		NM_015436	ENSG00000163743	RCHY1	ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363	ring finger and CHY zinc finger domain containing 1	protein-coding
33461	chr10	119052701	119053100	+	0	NA	intron (NM_003750, intron 14 of 21)	Tigger1|DNA|TcMar-Tigger	7238	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
233877	chrX	1563901	1564100	+	0	NA	Intergenic	Intergenic	-26815	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
103879	chr17	79783351	79783650	+	0	NA	TTS (NM_032647)	TTS (NM_032647)	5322	NM_032647	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
22153	chr1	212124951	212125450	+	0	NA	Intergenic	MIR|SINE|MIR	47587	NR_036068	100422947		NR_036068	ENSG00000264358	MIR3122	mir-3122	microRNA 3122	ncRNA
53436	chr12	65167821	65168100	+	0	NA	Intergenic	AluSq4|SINE|Alu	-1623	NM_001167614	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
153628	chr22	28714021	28714380	+	0	NA	intron (NM_001349956, intron 4 of 13)	L1MB5|LINE|L1	27620	NM_001005735	11200		NM_007194	ENSG00000183765	CHEK2	CDS1|CHK2|HuCds1|LFS2|PP1425|RAD53|TPDS4|hCds1	checkpoint kinase 2	protein-coding
79125	chr16	217601	218200	+	0	NA	intron (NM_018032, intron 3 of 8)	AluSq2|SINE|Alu	11549	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
44535	chr11	107929971	107930130	+	0	NA	intron (NM_017516, intron 1 of 1)	intron (NM_017516, intron 1 of 1)	1602	NM_017516	54734		NM_017516	ENSG00000179331	RAB39A	K28|RAB39	RAB39A, member RAS oncogene family	protein-coding
183382	chr5	77630001	77631550	+	0	NA	exon (NM_032109, exon 3 of 3)	exon (NM_032109, exon 3 of 3)	7938	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
140863	chr2	237442671	237443030	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-28643	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
160325	chr3	27639271	27640000	+	0	NA	Intergenic	Intergenic	82688	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
48462	chr12	9753571	9754200	+	0	NA	intron (NM_001781, intron 4 of 4)	intron (NM_001781, intron 4 of 4)	7016	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
223487	chr8	144059471	144059630	+	0	NA	intron (NM_017570, intron 3 of 26)	intron (NM_017570, intron 3 of 26)	1142	NM_017570	26873		NM_017570	ENSG00000178814	OPLAH	5-Opase|OPLA|OPLAHD	5-oxoprolinase, ATP-hydrolysing	protein-coding
25734	chr10	9060451	9061230	+	0	NA	Intergenic	Intergenic	162851	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
15647	chr1	150764071	150765000	+	0	NA	intron (NM_001199739, intron 2 of 6)	AluSx1|SINE|Alu	1243	NM_004079	1520		NM_004079	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
97027	chr17	42308101	42308800	+	0	NA	intron (NM_001288719, intron 15 of 17)	intron (NM_001288719, intron 15 of 17)	20394	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
117095	chr19	19169921	19170980	+	0	NA	promoter-TSS (NM_001367282)	promoter-TSS (NM_001367282)	-187	NM_001367282	100271849		NM_001145785	ENSG00000213999	MEF2B	RSRFR2	myocyte enhancer factor 2B	protein-coding
142634	chr20	5659671	5660080	+	0	NA	Intergenic	Intergenic	-48869	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
157015	chr22	42531501	42531700	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-11804	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
184011	chr5	91162321	91163130	+	0	NA	intron (NR_003149, intron 89 of 89)	intron (NR_003149, intron 89 of 89)	151677	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
188951	chr5	160492501	160492700	+	0	NA	Intergenic	Intergenic	7248	NR_029701	406938		NR_029701	ENSG00000283733	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
75894	chr15	69769471	69769700	+	0	NA	Intergenic	L1PA6|LINE|L1	-65649	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
162023	chr3	46538771	46540000	+	0	NA	intron (NM_024512, intron 3 of 8)	intron (NM_024512, intron 3 of 8)	-18013	NR_073385	83598		NM_031441	ENSG00000268324	LRRC2-AS1	LUZP3|LUZP3P|LUZPP1	LRRC2 antisense RNA 1	ncRNA
49851	chr12	32956651	32956750	+	0	NA	Intergenic	L1PA4|LINE|L1	-59923	NM_001005242	5318		NM_004572	ENSG00000057294	PKP2	ARVD9	plakophilin 2	protein-coding
173894	chr4	24583271	24583900	+	0	NA	intron (NM_001358, intron 1 of 13)	intron (NM_001358, intron 1 of 13)	969	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
1942	chr1	6508771	6509130	+	0	NA	intron (NM_198681, intron 1 of 21)	intron (NM_198681, intron 1 of 21)	11142	NM_198681	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
93009	chr17	17209271	17209430	+	0	NA	Intergenic	L1MA3|LINE|L1	-3017	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
222129	chr8	132055421	132055680	+	0	NA	intron (NM_001080399, intron 1 of 13)	Tigger8|DNA|TcMar-Tigger	3832	NM_001080399	729330		NM_001080399	ENSG00000253117	OC90	PLA2L	otoconin 90	protein-coding
34384	chr10	132326851	132327180	+	0	NA	intron (NM_001318881, intron 1 of 1)	intron (NM_001318881, intron 1 of 1)	4865	NM_001318882	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
215706	chr8	1470601	1471330	+	0	NA	intron (NM_001346810, intron 3 of 14)	intron (NM_001346810, intron 3 of 14)	150699	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
46176	chr11	123192021	123192280	+	0	NA	intron (NM_024769, intron 1 of 6)	L2c|LINE|L2	3098	NM_024769	79827		NM_024769	ENSG00000166250	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR like membrane protein	protein-coding
91553	chr17	5043401	5043600	+	0	NA	Intergenic	Intergenic	-8068	NM_001104577	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
88494	chr16	85159701	85159900	+	0	NA	Intergenic	MIR|SINE|MIR	22650	NR_033984	400548		NR_033984	ENSG00000278214	LINC02139	-	long intergenic non-protein coding RNA 2139	ncRNA
188601	chr5	157183721	157184630	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	3335	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
180160	chr5	1391271	1391430	+	0	NA	Intergenic	Intergenic	-11277	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
127224	chr2	38611101	38611930	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-8479	NM_001142650	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
49158	chr12	14955771	14957200	+	0	NA	intron (NM_001321420, intron 1 of 6)	intron (NM_001321420, intron 1 of 6)	4795	NM_001321421	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
113450	chr19	9846851	9847500	+	0	NA	intron (NM_006221, intron 2 of 3)	(CA)n|Simple_repeat|Simple_repeat	11000	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
109863	chr19	1233271	1233430	+	0	NA	intron (NM_152769, intron 8 of 8)	intron (NM_152769, intron 8 of 8)	4655	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
230208	chr9	127818901	127819100	+	0	NA	intron (NM_001114753, intron 10 of 14)	AluY|SINE|Alu	2934	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
8020	chr1	38029021	38029280	+	0	NA	Intergenic	Intergenic	16416	NM_016037	51118		NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11 small subunit processome component	protein-coding
162329	chr3	47576921	47577180	+	0	NA	exon (NM_001206943, exon 2 of 5)	exon (NM_001206943, exon 2 of 5)	1815	NM_006574	10675		NM_006574	ENSG00000114646	CSPG5	NGC	chondroitin sulfate proteoglycan 5	protein-coding
13475	chr1	114577801	114578000	+	0	NA	intron (NM_005872, intron 2 of 6)	intron (NM_005872, intron 2 of 6)	3715	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
4189	chr1	19436201	19436400	+	0	NA	intron (NM_001313932, intron 1 of 4)	Tigger7|DNA|TcMar-Tigger	47995	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
204461	chr7	4679901	4680580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2055	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
216216	chr8	11955501	11955700	+	0	NA	Intergenic	Intergenic	18999	NM_001033018	613210		NM_001033018	ENSG00000205884	DEFB136	DEFB137	defensin beta 136	protein-coding
222994	chr8	143268621	143268880	+	0	NA	intron (NM_138465, intron 1 of 3)	intron (NM_138465, intron 1 of 3)	1305	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
84976	chr16	31442471	31443530	+	0	NA	promoter-TSS (NM_001136509)	promoter-TSS (NM_001136509)	160	NM_001353381	283933		NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
85949	chr16	57201351	57201650	+	0	NA	intron (NM_001305163, intron 1 of 14)	SVA_D|Retroposon|SVA	15171	NM_001305164	89970		NM_133368	ENSG00000159579	RSPRY1	SEMDFA	ring finger and SPRY domain containing 1	protein-coding
81941	chr16	11794601	11794900	+	0	NA	intron (NM_014153, intron 1 of 22)	intron (NM_014153, intron 1 of 22)	2508	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
142116	chr20	2666351	2666680	+	0	NA	Intergenic	Intergenic	-2292	NM_001258384	3420		NM_006899	ENSG00000101365	IDH3B	RP46	isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta	protein-coding
19795	chr1	182484571	182484730	+	0	NA	intron (NM_001137669, intron 6 of 21)	L1M2a|LINE|L1	34504	NM_001137669	353299		NM_032267	ENSG00000121446	RGSL1	RGSL|RGSL2	regulator of G protein signaling like 1	protein-coding
13323	chr1	113761221	113761880	+	0	NA	TTS (NR_130896)	TTS (NR_130896)	-1662	NM_001323042	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
220125	chr8	94721151	94721480	+	0	NA	intron (NM_181787, intron 1 of 18)	intron (NM_181787, intron 1 of 18)	1415	NM_181787	286148		NM_181787	ENSG00000156162	DPY19L4	-	dpy-19 like 4	protein-coding
172727	chr4	2816371	2816530	+	0	NA	intron (NM_001145855, intron 1 of 12)	L1M4|LINE|L1	-1720	NM_001145856	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
197858	chr6	89051801	89052000	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-28851	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
94813	chr17	31312221	31312780	+	0	NA	intron (NM_006495, intron 1 of 1)	AluSx1|SINE|Alu	1554	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
93663	chr17	19204071	19204550	+	0	NA	Intergenic	Intergenic	-11320	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
49396	chr12	22478121	22478380	+	0	NA	intron (NR_169598, intron 15 of 24)	intron (NR_169598, intron 15 of 24)	65947	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
139103	chr2	218898011	218898750	+	0	NA	Intergenic	CpG	17528	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
111409	chr19	3771601	3771800	+	0	NA	exon (NM_001319074, exon 2 of 3)	exon (NM_001319074, exon 2 of 3)	528	NM_001319074	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
178071	chr4	140092801	140093400	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-34915	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
212691	chr7	129767121	129767380	+	0	NA	Intergenic	Intergenic	3242	NR_029614	406958		NR_029614	ENSG00000207990	MIR182	MIRN182|miRNA182|mir-182	microRNA 182	ncRNA
164549	chr3	63970851	63971450	+	0	NA	intron (NM_001128149, intron 1 of 8)	intron (NM_001128149, intron 1 of 8)	3356	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
175989	chr4	81648251	81648350	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-176393	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
210947	chr7	101308121	101309050	+	0	NA	intron (NR_110115, intron 1 of 1)	L1M2|LINE|L1	278	NR_110115	101927746		NR_110115		EMSLR	BCCE4|EMS	E2F1 mRNA stabilizing lncRNA	ncRNA
19760	chr1	182031071	182031230	+	0	NA	Intergenic	Intergenic	30562	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
50149	chr12	45743271	45743430	+	0	NA	intron (NM_152641, intron 3 of 20)	AluSg4|SINE|Alu	13641	NM_001347839	196528		NM_152641	ENSG00000189079	ARID2	BAF200|CSS6|SMARCF3|ZIPZAP|p200	AT-rich interaction domain 2	protein-coding
204790	chr7	5621471	5621630	+	0	NA	3' UTR (NM_001377156, exon 18 of 18)	3' UTR (NM_001377156, exon 18 of 18)	28734	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
138291	chr2	203714801	203715080	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	8301	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
181637	chr5	49645801	49646030	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	795373	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
110197	chr19	1690701	1692080	+	0	NA	Intergenic	Intergenic	-38775	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
150117	chr21	37462451	37462550	+	0	NA	intron (NM_101395, intron 3 of 12)	L1MEc|LINE|L1	42201	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
52805	chr12	56754951	56755450	+	0	NA	Intergenic	AluJo|SINE|Alu	-2877	NM_000946	5557		NM_000946	ENSG00000198056	PRIM1	PDIL|p49	DNA primase subunit 1	protein-coding
36035	chr11	2923121	2923580	+	0	NA	intron (NM_183233, intron 10 of 10)	intron (NM_183233, intron 10 of 10)	6070	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
211138	chr7	102541871	102542400	+	0	NA	intron (NM_001097615, intron 4 of 8)	intron (NM_001097615, intron 4 of 8)	2653	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
52491	chr12	56005401	56006000	+	0	NA	TTS (NM_000456)	TTS (NM_000456)	-1804	NM_001351091	64375		NM_022465	ENSG00000123411	IKZF4	EOS|ZNFN1A4	IKAROS family zinc finger 4	protein-coding
2869	chr1	11355421	11355680	+	0	NA	Intergenic	Intergenic	82352	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
227249	chr9	89351671	89351900	+	0	NA	intron (NM_001282690, intron 14 of 16)	intron (NM_001282690, intron 14 of 16)	32934	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
81778	chr16	11521821	11522080	+	0	NA	intron (NM_001370704, intron 3 of 66)	intron (NM_001370704, intron 3 of 66)	5297	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
51833	chr12	53455971	53456630	+	0	NA	intron (NM_031989, intron 5 of 14)	AluSg|SINE|Alu	4198	NM_001098620	5094		NM_005016	ENSG00000197111	PCBP2	HNRNPE2|HNRPE2|hnRNP-E2	poly(rC) binding protein 2	protein-coding
70509	chr14	102297751	102298050	+	0	NA	intron (NR_148552, intron 1 of 9)	LTR12C|LTR|ERV1	7264	NM_014226	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
80076	chr16	1991711	1993280	+	0	NA	intron (NM_004209, intron 2 of 3)	CpG-9054	2525	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
67611	chr14	72716851	72717550	+	0	NA	intron (NM_001280544, intron 5 of 9)	intron (NM_001280544, intron 5 of 9)	175449	NM_001280544	8110		NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4|SMARCG3	double PHD fingers 3	protein-coding
144067	chr20	33678451	33679100	+	0	NA	intron (NM_005225, intron 3 of 6)	AluJo|SINE|Alu	-4347	NM_031232	63941		NM_031231	ENSG00000125967	NECAB3	APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5	N-terminal EF-hand calcium binding protein 3	protein-coding
195632	chr6	37850221	37850480	+	0	NA	intron (NM_021943, intron 1 of 5)	L2a|LINE|L2	30623	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
76493	chr15	74905901	74907550	+	0	NA	exon (NM_020447, exon 1 of 5)	exon (NM_020447, exon 1 of 5)	126	NR_135852	57184		NM_020447	ENSG00000178761	FAM219B	C15orf17	family with sequence similarity 219 member B	protein-coding
199446	chr6	117548701	117549300	+	0	NA	non-coding (NR_158983, exon 14 of 14)	non-coding (NR_158983, exon 14 of 14)	53511	NM_001017408	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
7317	chr1	32627101	32628280	+	0	NA	intron (NM_001366270, intron 2 of 3)	intron (NM_001366270, intron 2 of 3)	22860	NM_001366278	339487		NM_178547	ENSG00000176261	ZBTB8OS	ARCH|ARCH2	zinc finger and BTB domain containing 8 opposite strand	protein-coding
77296	chr15	82342971	82343400	+	0	NA	exon (NM_001322400, exon 9 of 10)	exon (NM_001322400, exon 9 of 10)	6290	NM_001164465	647042		NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family like 10	protein-coding
188739	chr5	157539801	157540310	+	0	NA	intron (NM_033274, intron 3 of 22)	MIRb|SINE|MIR	35720	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
137596	chr2	197284401	197285580	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	17529	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
228820	chr9	111994871	111995030	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	62850	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
97199	chr17	42692271	42692930	+	0	NA	exon (NM_003632, exon 17 of 24)	exon (NM_003632, exon 17 of 24)	10069	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
80283	chr16	2245121	2245380	+	0	NA	intron (NM_001178029, intron 3 of 6)	intron (NM_001178029, intron 3 of 6)	6337	NM_001178029	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
122144	chr19	48865921	48866180	+	0	NA	intron (NM_020904, intron 2 of 19)	intron (NM_020904, intron 2 of 19)	2567	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
59987	chr13	32381551	32381880	+	0	NA	intron (NM_000059, intron 24 of 26)	L2a|LINE|L2	46415	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
29679	chr10	72045651	72046180	+	0	NA	Intergenic	Intergenic	42636	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
98456	chr17	47071221	47071680	+	0	NA	Intergenic	MER4D0|LTR|ERV1	-92197	NM_203400	388394		NM_203400	ENSG00000179673	RPRML	-	reprimo like	protein-coding
97397	chr17	43368901	43371180	+	0	NA	non-coding (NR_027412, exon 6 of 6)	non-coding (NR_027412, exon 6 of 6)	18858	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
81258	chr16	4617771	4618450	+	0	NA	Intergenic	Intergenic	-3222	NM_001330467	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
233658	chrX	1013251	1013950	+	0	NA	Intergenic	AluSx1|SINE|Alu	199049	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
73088	chr15	40936271	40936430	+	0	NA	exon (NM_019074, exon 9 of 11)	exon (NM_019074, exon 9 of 11)	7010	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
174392	chr4	39048121	39048780	+	0	NA	intron (NM_001171654, intron 1 of 10)	MLT1I|LTR|ERVL-MaLR	3619	NM_001007075	51088		NM_015990	ENSG00000109790	KLHL5	-	kelch like family member 5	protein-coding
42163	chr11	67799501	67800500	+	0	NA	intron (NR_024249, intron 2 of 3)	intron (NR_024249, intron 2 of 3)	5336	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
58364	chr12	131682051	131683230	+	0	NA	Intergenic	Intergenic	-28450	NM_004592	6433		NM_004592	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor SWAP	protein-coding
189188	chr5	171417951	171418050	+	0	NA	Intergenic	Intergenic	-1647	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
601	chr1	1298901	1299350	+	0	NA	intron (NM_030649, intron 10 of 23)	intron (NM_030649, intron 10 of 23)	-2955	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
219719	chr8	81016221	81016680	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	95618	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
116501	chr19	18145901	18146100	+	0	NA	intron (NM_015016, intron 24 of 26)	intron (NM_015016, intron 24 of 26)	-7163	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
233908	chrX	1617471	1617630	+	0	NA	intron (NM_001171039, intron 1 of 6).2	Charlie4a|DNA|hAT-Charlie	2417	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
206000	chr7	26200101	26203530	+	0	NA	promoter-TSS (NM_016587)	promoter-TSS (NM_016587)	70	NM_016587	11335		NM_007276	ENSG00000122565	CBX3	HECH|HP1-GAMMA|HP1Hs-gamma|HP1gamma	chromobox 3	protein-coding
3126	chr1	12417351	12417650	+	0	NA	intron (NM_018156, intron 64 of 68)	intron (NM_018156, intron 64 of 68)	-89746	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
126554	chr2	28617551	28618250	+	0	NA	intron (NM_153021, intron 45 of 57)	intron (NM_153021, intron 45 of 57)	51543	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
132796	chr2	110245421	110246450	+	0	NA	intron (NR_037626, intron 1 of 3)	CpG	297	NR_037626	100507334		NR_037626	ENSG00000290732	LOC100507334	-	two pore channel 3 pseudogene	pseudo
23380	chr1	228175621	228176480	+	0	NA	3' UTR (NM_001010867, exon 3 of 3)	3' UTR (NM_001010867, exon 3 of 3)	1480	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
185291	chr5	126508521	126509380	+	0	NA	Intergenic	Intergenic	43800	NM_001146322	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
195555	chr6	37483851	37485700	+	0	NA	intron (NM_138493, intron 3 of 3)	intron (NM_138493, intron 3 of 3)	15118	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
213029	chr7	131034121	131035100	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	72420	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
177527	chr4	118632121	118632380	+	0	NA	non-coding (NR_109983, exon 10 of 10)	non-coding (NR_109983, exon 10 of 10)	2321	NR_103825	729218		NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
186926	chr5	139612971	139613130	+	0	NA	intron (NM_003339, intron 2 of 6)	intron (NM_003339, intron 2 of 6)	-34249	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
28452	chr10	49183321	49184030	+	0	NA	intron (NM_001288741, intron 1 of 4)	MIR|SINE|MIR	4716	NM_001353331	170371		NM_001010863	ENSG00000204161	TMEM273	C10orf128	transmembrane protein 273	protein-coding
129900	chr2	73228071	73228230	+	0	NA	TTS (NM_006062)	TTS (NM_006062)	5089	NM_032319	84279		NM_032319	ENSG00000135617	PRADC1	C2orf7|PAP21	protease associated domain containing 1	protein-coding
50347	chr12	47157471	47157830	+	0	NA	intron (NM_001281429, intron 2 of 2)	L1MB3|LINE|L1	-30162	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
67040	chr14	67626101	67626800	+	0	NA	intron (NM_001172, intron 2 of 7)	L1MB7|LINE|L1	6530	NM_001172	384		NM_001172	ENSG00000081181	ARG2	-	arginase 2	protein-coding
65395	chr14	50786901	50787630	+	0	NA	intron (NM_020921, intron 5 of 30)	intron (NM_020921, intron 5 of 30)	-34532	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
105105	chr17	82199271	82199430	+	0	NA	intron (NM_001367828, intron 2 of 16)	AluSx|SINE|Alu	13492	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
29861	chr10	72363871	72364950	+	0	NA	Intergenic	Intergenic	-9491	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
103846	chr17	79703051	79703350	+	0	NA	Intergenic	(CCT)n|Simple_repeat|Simple_repeat	4049	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	mir-4739	microRNA 4739	ncRNA
219687	chr8	80604201	80604400	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	118074	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
156407	chr22	41178271	41178800	+	0	NA	exon (NM_001429, exon 31 of 31)	exon (NM_001429, exon 31 of 31)	18966	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
148315	chr20	63742501	63743700	+	0	NA	TTS (NM_001369741)	TTS (NM_001369741)	3324	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
160541	chr3	30669221	30669680	+	0	NA	intron (NM_001024847, intron 4 of 7)	LTR9|LTR|ERV1	62849	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
37567	chr11	18802671	18802980	+	0	NA	Intergenic	Intergenic	-10104	NM_001278236	84867		NM_006906	ENSG00000110786	PTPN5	PTPSTEP|STEP|STEP61	protein tyrosine phosphatase non-receptor type 5	protein-coding
24804	chr10	88271	88430	+	0	NA	Intergenic	Intergenic	-39054	NM_177987	347688		NM_177987	ENSG00000261456	TUBB8	OOMD|OOMD2|OZEMA2|bA631M21.2	tubulin beta 8 class VIII	protein-coding
229156	chr9	114495421	114495880	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	7565	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
180313	chr5	5496921	5497630	+	0	NA	Intergenic	Intergenic	74598	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
135739	chr2	169528251	169528700	+	0	NA	TTS (NM_001281476)	TTS (NM_001281476)	18773	NM_006063	10324		NM_006063	ENSG00000239474	KLHL41	KBTBD10|Krp1|SARCOSIN	kelch like family member 41	protein-coding
205737	chr7	23496651	23496750	+	0	NA	Intergenic	AluSx|SINE|Alu	6312	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
12749	chr1	109619001	109620300	+	0	NA	promoter-TSS (NM_001379232)	promoter-TSS (NM_001379232)	-34	NM_001379232	2780		NM_005272	ENSG00000134183	GNAT2	ACHM4|GNATC|HG1D	G protein subunit alpha transducin 2	protein-coding
129650	chr2	70193071	70193230	+	0	NA	Intergenic	AluSg4|SINE|Alu	-2131	NR_145967	54980		NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
130467	chr2	85544601	85545430	+	0	NA	3' UTR (NM_001142269, exon 14 of 14)	3' UTR (NM_001142269, exon 14 of 14)	5847	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
200469	chr6	135147551	135147850	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	-33608	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
113922	chr19	10712101	10712300	+	0	NA	exon (NM_031209, exon 6 of 10)	exon (NM_031209, exon 6 of 10)	-5853	NM_004945	1785		NM_004945	ENSG00000079805	DNM2	CMT2M|CMTDI1|CMTDIB|DI-CMTB|DYN2|DYNII|LCCS5	dynamin 2	protein-coding
217489	chr8	29029451	29029750	+	0	NA	intron (NM_001324391, intron 6 of 10)	MIR3|SINE|MIR	138286	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
86914	chr16	68075951	68076250	+	0	NA	intron (NM_001271763, intron 12 of 14)	intron (NM_001271763, intron 12 of 14)	-9270	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
206281	chr7	29921421	29921750	+	0	NA	3' UTR (NM_001145513, exon 8 of 8)	3' UTR (NM_001145513, exon 8 of 8)	68216	NM_014766	9805		NM_014766	ENSG00000136193	SCRN1	SES1	secernin 1	protein-coding
29400	chr10	70148701	70149300	+	0	NA	3' UTR (NM_020150, exon 7 of 7)	3' UTR (NM_020150, exon 7 of 7)	-2300	NM_001040273	219743		NM_173555	ENSG00000156521	TYSND1	NET41	trypsin like peroxisomal matrix peptidase 1	protein-coding
65360	chr14	50523151	50523530	+	0	NA	intron (NM_198794, intron 2 of 31)	intron (NM_198794, intron 2 of 31)	9229	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
225048	chr9	33165701	33166300	+	0	NA	promoter-TSS (NR_108109)	promoter-TSS (NR_108109)	-948	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
239061	chrY	7291921	7292380	+	0	NA	intron (NR_028062, intron 1 of 7)	AluJr|SINE|Alu	18178	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
165421	chr3	98329051	98329760	+	0	NA	Intergenic	L1P4a|LINE|L1	-24449	NM_001005517	403278		NM_001005517	ENSG00000196098	OR5K4	-	olfactory receptor family 5 subfamily K member 4	protein-coding
141385	chr2	240780921	240781180	+	0	NA	intron (NM_001379653, intron 10 of 46)	(CA)n|Simple_repeat|Simple_repeat	38227	NM_001379651	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
182015	chr5	55355871	55356230	+	0	NA	intron (NM_015360, intron 14 of 26)	intron (NM_015360, intron 14 of 26)	48061	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
62243	chr13	98536321	98536780	+	0	NA	intron (NM_001286649, intron 1 of 9)	AluJo|SINE|Alu	-14425	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
184884	chr5	112691521	112691980	+	0	NA	Intergenic	LTR41|LTR|ERVL	-8862	NR_104673	102467216		NR_104673		LOC102467216	-	uncharacterized LOC102467216	ncRNA
17103	chr1	156149801	156150090	+	0	NA	promoter-TSS (NM_001193300)	promoter-TSS (NM_001193300)	1	NM_001370571	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
29168	chr10	68826621	68827730	+	0	NA	promoter-TSS (NM_001130161)	promoter-TSS (NM_001130161)	-356	NM_152709	219736		NM_152709	ENSG00000165730	STOX1	C10orf24	storkhead box 1	protein-coding
28234	chr10	45432521	45432980	+	0	NA	intron (NM_001256153, intron 7 of 13).2	L1M5|LINE|L1	20371	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
72047	chr15	28738901	28739730	+	0	NA	intron (NR_026589, intron 1 of 8)	intron (NR_026589, intron 1 of 8)	1732	NR_026589	440253		NR_026589		WHAMMP2	WHAMML2|WHDC1L2	WHAMM pseudogene 2	pseudo
38500	chr11	45878701	45879300	+	0	NA	intron (NM_021117, intron 11 of 11)	AluSp|SINE|Alu	-6651	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
177370	chr4	110620921	110621380	+	0	NA	intron (NM_153426, intron 5 of 5)	CpG	1927	NM_000325	5308		NM_000325	ENSG00000164093	PITX2	ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired like homeodomain 2	protein-coding
214695	chr7	150983701	150984550	+	0	NA	Intergenic	Intergenic	-5804	NM_000238	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
82361	chr16	15988301	15988500	+	0	NA	intron (NM_004996, intron 1 of 30)	L2a|LINE|L2	38784	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
58928	chr13	19759151	19759250	+	0	NA	intron (NM_001354909, intron 3 of 8)	intron (NM_001354909, intron 3 of 8)	23745	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
191121	chr6	4035151	4035880	+	0	NA	intron (NR_146785, intron 2 of 20)	intron (NR_146785, intron 2 of 20)	14215	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
177845	chr4	127962151	127962250	+	0	NA	intron (NM_001371590, intron 1 of 11)	intron (NM_001371590, intron 1 of 11)	2973	NM_001371594	256471		NM_152778	ENSG00000164073	MFSD8	CCMD|CLN7	major facilitator superfamily domain containing 8	protein-coding
135865	chr2	170940171	170940330	+	0	NA	intron (NM_015530, intron 1 of 9)	intron (NM_015530, intron 1 of 9)	10997	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
3313	chr1	15405251	15405950	+	0	NA	Intergenic	Intergenic	-4288	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
39044	chr11	47859171	47859930	+	0	NA	Intergenic	AluSg|SINE|Alu	-11006	NM_015231	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
44114	chr11	96020051	96020680	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-96258	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
77485	chr15	84581771	84581930	+	0	NA	Intergenic	Intergenic	10716	NR_038273	100506874		NR_038273		LINC00933	-	long intergenic non-protein coding RNA 933	ncRNA
113044	chr19	8004751	8006750	+	0	NA	promoter-TSS (NM_001419)	promoter-TSS (NM_001419)	-109	NM_001419	1994		NM_001419	ENSG00000066044	ELAVL1	ELAV1|HUR|Hua|MelG	ELAV like RNA binding protein 1	protein-coding
90588	chr17	1570271	1570630	+	0	NA	3' UTR (NM_001321365, exon 15 of 15)	3' UTR (NM_001321365, exon 15 of 15)	-7658	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
199479	chr6	118606251	118606550	+	0	NA	intron (NM_206921, intron 2 of 5)	MER41-int|LTR|ERV1	45191	NM_206921	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
43205	chr11	75423201	75423550	+	0	NA	intron (NM_001039548, intron 5 of 5)	intron (NM_001039548, intron 5 of 5)	7254	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
90312	chr17	1107171	1108260	+	0	NA	intron (NM_001322840, intron 2 of 22).2	intron (NM_001322840, intron 2 of 22).2	1387	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
25472	chr10	6918301	6918900	+	0	NA	Intergenic	Intergenic	139002	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
197677	chr6	85591101	85591500	+	0	NA	intron (NM_001350532, intron 1 of 29)	intron (NM_001350532, intron 1 of 29)	2558	NM_153816	57231		NM_020468	ENSG00000135317	SNX14	RGS-PX2|SCAR20	sorting nexin 14	protein-coding
227276	chr9	89380551	89380800	+	0	NA	intron (NM_001371194, intron 15 of 15)	intron (NM_001371194, intron 15 of 15)	61824	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
30211	chr10	74852521	74852780	+	0	NA	intron (NM_012330, intron 3 of 17).2	intron (NM_012330, intron 3 of 17).2	26050	NM_001370137	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
202465	chr6	158211901	158212300	+	0	NA	Intergenic	AluSx1|SINE|Alu	43750	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
171874	chr4	771221	772230	+	0	NA	TTS (NM_006315)	TTS (NM_006315)	10123	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
231436	chr9	131251951	131253400	+	0	NA	Intergenic	Intergenic	23835	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
69961	chr14	99729771	99731280	+	0	NA	Intergenic	CpG	-7197	NM_001375411	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
70421	chr14	102024501	102025280	+	0	NA	intron (NM_001376, intron 43 of 77)	AluY|SINE|Alu	60317	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
76075	chr15	72476551	72477080	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	2485	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
125582	chr2	16653121	16653380	+	0	NA	intron (NM_030797, intron 1 of 11)	L2a|LINE|L2	12584	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
39552	chr11	61119901	61121900	+	0	NA	intron (NM_001346456, intron 5 of 10)	intron (NM_001346456, intron 5 of 10)	18411	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
169356	chr3	160404501	160404700	+	0	NA	promoter-TSS (NR_029525)	promoter-TSS (NR_029525)	12	NR_029663	406949		NR_029663	ENSG00000207779	MIR15B	MIRN15B|hsa-mir-15b|miR-15b	microRNA 15b	ncRNA
180019	chr5	1036251	1036550	+	0	NA	intron (NM_033120, intron 9 of 9)	intron (NM_033120, intron 9 of 9)	26574	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
64904	chr14	35398621	35399330	+	0	NA	Intergenic	AluSz|SINE|Alu	5774	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
26697	chr10	22641901	22642430	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	71943	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
164576	chr3	64022751	64023930	+	0	NA	exon (NM_001271779, exon 1 of 9)	exon (NM_001271779, exon 1 of 9)	132	NM_001271781	9861		NM_014814	ENSG00000163636	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	proteasome 26S subunit, non-ATPase 6	protein-coding
147533	chr20	59400601	59401200	+	0	NA	Intergenic	Intergenic	100289	NM_001302456	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
71710	chr15	20343151	20343330	+	0	NA	Intergenic	(AGCCAGCCA)n|Simple_repeat|Simple_repeat	60496	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
51180	chr12	50222171	50222980	+	0	NA	promoter-TSS (NM_001113547)	promoter-TSS (NM_001113547)	83	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
193463	chr6	30513601	30513800	+	0	NA	Intergenic	L1M4b|LINE|L1	-2566	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
130838	chr2	87151951	87152880	+	0	NA	Intergenic	MER52-int|LTR|ERV1	-42371	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
13093	chr1	111600871	111601750	+	0	NA	intron (NR_034126, intron 4 of 4)	intron (NR_034126, intron 4 of 4)	7008	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
135951	chr2	172011571	172012130	+	0	NA	intron (NM_001322279, intron 1 of 9)	L1MB8|LINE|L1	11897	NR_136276	254042		NM_199227	ENSG00000172878	METAP1D	MAP 1D|MAP1D|MetAP 1D|Metap1l	methionyl aminopeptidase type 1D, mitochondrial	protein-coding
57572	chr12	122247001	122247400	+	0	NA	intron (NM_001351018, intron 6 of 12)	intron (NM_001351018, intron 6 of 12)	19294	NM_022916	65082		NM_022916	ENSG00000139719	VPS33A	MPSPS	VPS33A core subunit of CORVET and HOPS complexes	protein-coding
231897	chr9	133060601	133061450	+	0	NA	promoter-TSS (NM_001807)	promoter-TSS (NM_001807)	-956	NM_001807	1056		NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
124627	chr2	1538751	1538930	+	0	NA	intron (NM_175722, intron 13 of 14)	MLT1C|LTR|ERVL-MaLR	-13090	NR_168373	102723730		NR_168373		LOC102723730	-	uncharacterized LOC102723730	ncRNA
101899	chr17	74381371	74381750	+	0	NA	Intergenic	Intergenic	14054	NM_001331077	350383		NM_181790	ENSG00000257008	GPR142	GPRg1b|PGR2	G protein-coupled receptor 142	protein-coding
174143	chr4	36235071	36236280	+	0	NA	intron (NR_146894, intron 1 of 32)	intron (NR_146894, intron 1 of 32)	8264	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
213323	chr7	135183401	135183600	+	0	NA	TTS (NM_014149)	TTS (NM_014149)	-12674	NM_001243754	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
105564	chr18	67771	67930	+	0	NA	Intergenic	Intergenic	-18293	NM_001358689	260334		NM_001358689	ENSG00000173213	TUBB8B	TUBB8P12	tubulin beta 8B	protein-coding
78913	chr15	101188901	101189100	+	0	NA	intron (NM_014918, intron 2 of 2)	intron (NM_014918, intron 2 of 2)	63048	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
94449	chr17	29247921	29248250	+	0	NA	intron (NM_005208, intron 1 of 5)	AluSp|SINE|Alu	1226	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
49026	chr12	14364801	14366380	+	0	NA	promoter-TSS (NM_001286514)	promoter-TSS (NM_001286514)	-42	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
20316	chr1	197453571	197453730	+	0	NA	intron (NR_047564, intron 11 of 11)	AluJb|SINE|Alu	185398	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
204338	chr7	2841471	2841830	+	0	NA	intron (NM_007353, intron 1 of 3)	intron (NM_007353, intron 1 of 3)	2658	NM_007353	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
95476	chr17	36200701	36200900	+	0	NA	Intergenic	AluSx3|SINE|Alu	-4042	NM_002983	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
106311	chr18	12883151	12884680	+	0	NA	intron (NM_080422, intron 1 of 9)	CpG	322	NM_002828	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
213247	chr7	134174851	134174950	+	0	NA	intron (NM_001365700, intron 8 of 15)	intron (NM_001365700, intron 8 of 15)	47560	NM_144648	136332		NM_144648	ENSG00000155530	LRGUK	CFAP246	leucine rich repeats and guanylate kinase domain containing	protein-coding
202572	chr6	158682001	158682680	+	0	NA	intron (NM_001318745, intron 2 of 14)	intron (NM_001318745, intron 2 of 14)	18937	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
135601	chr2	168013571	168014330	+	0	NA	intron (NM_013233, intron 15 of 17)	MIRb|SINE|MIR	-72806	NR_131227	105616981		NR_131227	ENSG00000235335	B3GALT1-AS1	-	B3GALT1 antisense RNA 1	ncRNA
228571	chr9	103397971	103398130	+	0	NA	Intergenic	L1PB4|LINE|L1	-73017	NR_121578	101928496		NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA
233371	chr9	137504151	137504830	+	0	NA	intron (NM_001098537, intron 14 of 34)	AluSq|SINE|Alu	-45156	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
1718	chr1	5641051	5641150	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	221641	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
60004	chr13	32443101	32443380	+	0	NA	exon (NM_033111, exon 7 of 10)	exon (NM_033111, exon 7 of 10)	-15110	NM_001353628	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
98305	chr17	46239971	46240650	+	0	NA	Intergenic	AluSz|SINE|Alu	-14943	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
132768	chr2	109805451	109805750	+	0	NA	intron (NM_032260, intron 5 of 19)	AluSx|SINE|Alu	10991	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
233296	chr9	137322071	137322550	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-20039	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
96536	chr17	40353971	40354130	+	0	NA	intron (NM_000964, intron 6 of 8)	MER3|DNA|hAT-Charlie	10687	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
4003	chr1	18922871	18923030	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	-20151	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
15623	chr1	150625521	150625780	+	0	NA	exon (NM_004436, exon 3 of 4)	exon (NM_004436, exon 3 of 4)	3483	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
49090	chr12	14453871	14454830	+	0	NA	intron (NM_181352, intron 6 of 14)	intron (NM_181352, intron 6 of 14)	69069	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
97043	chr17	42323871	42324300	+	0	NA	intron (NM_001369519, intron 17 of 23)	AluSc|SINE|Alu	36029	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
54822	chr12	94761671	94762030	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-72548	NR_030171	574449		NR_030171	ENSG00000283998	MIR492	MIRN492|hsa-mir-492	microRNA 492	ncRNA
181159	chr5	39023271	39023430	+	0	NA	intron (NM_001285439, intron 2 of 38)	L1MEc|LINE|L1	51049	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
201922	chr6	151393621	151393880	+	0	NA	Intergenic	Intergenic	-2191	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
54993	chr12	96352171	96352800	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	47954	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
18606	chr1	165696671	165697200	+	0	NA	intron (NM_000696, intron 1 of 10)	intron (NM_000696, intron 1 of 10)	1627	NM_001365774	223		NM_000696	ENSG00000143149	ALDH9A1	ALDH4|ALDH7|ALDH9|E3|TMABA-DH|TMABADH|TMABALDH	aldehyde dehydrogenase 9 family member A1	protein-coding
92240	chr17	7911251	7911550	+	0	NA	intron (NM_001005271, intron 39 of 39)	intron (NM_001005271, intron 39 of 39)	4889	NM_001358699	284023		NM_001358699	ENSG00000179859	RNF227	LINC02581	ring finger protein 227	protein-coding
211846	chr7	108575501	108575700	+	0	NA	TTS (NM_012328)	TTS (NM_012328)	5726	NM_012328	4189		NM_012328	ENSG00000128590	DNAJB9	ERdj4|MDG-1|MDG1|MST049|MSTP049	DnaJ heat shock protein family (Hsp40) member B9	protein-coding
208223	chr7	65269271	65269850	+	0	NA	Intergenic	Intergenic	-104239	NM_001287532	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
95363	chr17	35866601	35867000	+	0	NA	intron (NM_152781, intron 1 of 14).2	intron (NM_152781, intron 1 of 14).2	2091	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
131224	chr2	95161251	95161950	+	0	NA	Intergenic	Intergenic	-1752	NM_032788	84874		NM_032788	ENSG00000144026	ZNF514	-	zinc finger protein 514	protein-coding
209933	chr7	92584521	92585400	+	0	NA	intron (NM_152789, intron 1 of 10)	AluJo|SINE|Alu	5089	NM_001288584	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
128672	chr2	61468801	61469200	+	0	NA	intron (NM_014709, intron 1 of 79)	AluSq2|SINE|Alu	2087	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
102671	chr17	76090701	76090900	+	0	NA	intron (NM_001145297, intron 7 of 19)	intron (NM_001145297, intron 7 of 19)	7276	NR_106928	102466753		NR_106928	ENSG00000275360	MIR6868	hsa-mir-6868	microRNA 6868	ncRNA
235502	chrX	47144401	47145780	+	0	NA	promoter-TSS (NM_001204467)	promoter-TSS (NM_001204467)	120	NM_019056	54539		NM_019056	ENSG00000147123	NDUFB11	CI-ESSS|ESSS|MC1DN30|NP17.3|Np15|P17.3	NADH:ubiquinone oxidoreductase subunit B11	protein-coding
178590	chr4	151411951	151412200	+	0	NA	intron (NM_001348694, intron 1 of 12)	MIRc|SINE|MIR	2899	NM_001109977	729830		NM_001109977	ENSG00000164142	FHIP1A	FAM160A1|FHIP-L	FHF complex subunit HOOK interacting protein 1A	protein-coding
49065	chr12	14411021	14412050	+	0	NA	intron (NM_181352, intron 1 of 14)	L1PA7|LINE|L1	26254	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
166408	chr3	113645201	113645530	+	0	NA	Intergenic	L1MEg|LINE|L1	50489	NR_039648	100616476		NR_039648	ENSG00000265253	MIR4446	mir-4446	microRNA 4446	ncRNA
64458	chr14	24239721	24239980	+	0	NA	TTS (NM_001351026)	TTS (NM_001351026)	2773	NM_001099274	26277		NM_012461	ENSG00000092330	TINF2	DKCA3|TIN2	TERF1 interacting nuclear factor 2	protein-coding
218758	chr8	58959771	58960330	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	159097	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
208347	chr7	66503301	66503500	+	0	NA	Intergenic	Intergenic	9709	NR_134571	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
114770	chr19	13746421	13746680	+	0	NA	intron (NM_001320561, intron 2 of 10)	MER34C2|LTR|ERV1	-1345	NM_001320568	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
138349	chr2	203909171	203909980	+	0	NA	Intergenic	Intergenic	-27188	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123549	chr19	54376501	54377080	+	0	NA	Intergenic	Intergenic	-6234	NM_001289026	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
56391	chr12	113188371	113188750	+	0	NA	intron (NM_001286215, intron 2 of 2)	MLT1B|LTR|ERVL-MaLR	2839	NM_032848	84934		NM_032848	ENSG00000139405	RITA1	C12orf52|RITA	RBPJ interacting and tubulin associated 1	protein-coding
200177	chr6	130723871	130724280	+	0	NA	Intergenic	Intergenic	-103331	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
130179	chr2	83338901	83339100	+	0	NA	Intergenic	L1MA6|LINE|L1	-183814	NR_146482	101928031		NR_146482	ENSG00000232548	LINC01809	-	long intergenic non-protein coding RNA 1809	ncRNA
75245	chr15	64895401	64896780	+	0	NA	Intergenic	Intergenic	-15812	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
215984	chr8	8860221	8860680	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	33180	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
182441	chr5	62305201	62306800	+	0	NA	promoter-TSS (NM_001243953)	promoter-TSS (NM_001243953)	-162	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
231027	chr9	129597171	129598230	+	0	NA	Intergenic	CpG	-11184	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
4493	chr1	21653351	21653750	+	0	NA	intron (NM_002885, intron 1 of 24)	(CTTC)n|Simple_repeat|Simple_repeat	-1652	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
116353	chr19	17866921	17867450	+	0	NA	Intergenic	Intergenic	4597	NR_000012	26780		NR_000012	ENSG00000207166	SNORA68	RNU68|SNORA68A|U68	small nucleolar RNA, H/ACA box 68	snoRNA
101029	chr17	64785021	64785680	+	0	NA	non-coding (NR_024386, exon 11 of 11)	non-coding (NR_024386, exon 11 of 11)	-3351	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
26532	chr10	21510201	21510750	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-13215	NR_160800	399726		NM_001010911	ENSG00000204682	MIR1915HG	C10orf114|CASC10|bA418C1.3	MIR1915 host gene	ncRNA
88339	chr16	84524271	84524630	+	0	NA	Intergenic	Intergenic	-19791	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
33914	chr10	124597471	124597630	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-106478	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
187512	chr5	142366801	142367000	+	0	NA	intron (NR_120664, intron 3 of 3)	Charlie8|DNA|hAT-Charlie	41607	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
227391	chr9	89520501	89520700	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-22487	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
126033	chr2	25359721	25360250	+	0	NA	Intergenic	Intergenic	-17395	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
194434	chr6	33123651	33124000	+	0	NA	intron (NR_001435, intron 2 of 4)	HUERS-P3-int|LTR|ERV1	11309	NR_001435	3116		NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo
110448	chr19	1987551	1987650	+	0	NA	exon (NM_017797, exon 6 of 9)	exon (NM_017797, exon 6 of 9)	28114	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
50093	chr12	44844421	44844680	+	0	NA	intron (NM_001145108, intron 2 of 19)	L1ME2|LINE|L1	31111	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
94175	chr17	28494451	28495180	+	0	NA	intron (NM_001346683, intron 10 of 12)	intron (NM_001346683, intron 10 of 12)	-11533	NM_001369369	8456		NM_003593	ENSG00000109101	FOXN1	FKHL20|RONU|TIDAND|TLIND|WHN	forkhead box N1	protein-coding
80370	chr16	2527001	2527580	+	0	NA	intron (NM_001330449, intron 3 of 10)	intron (NM_001330449, intron 3 of 10)	4118	NM_001048212	752014		NM_001048212	ENSG00000205923	CEMP1	CP-23|CP23	cementum protein 1	protein-coding
225681	chr9	36479171	36479530	+	0	NA	Intergenic	Intergenic	-78152	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
196736	chr6	45323621	45324180	+	0	NA	intron (NM_181356, intron 2 of 12)	intron (NM_181356, intron 2 of 12)	-4417	NM_001015051	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
72393	chr15	31381951	31384030	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	56155	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
76659	chr15	75682901	75683100	+	0	NA	exon (NM_001897, exon 6 of 10)	exon (NM_001897, exon 6 of 10)	29848	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
115528	chr19	15447221	15447480	+	0	NA	intron (NM_001371589, intron 2 of 12)	L2b|LINE|L2	-2198	NR_031716	100302127		NR_031716	ENSG00000269782	MIR1470	MIRN1470|hsa-mir-1470	microRNA 1470	ncRNA
23753	chr1	232725051	232725850	+	0	NA	Intergenic	(GGGAG)n|Simple_repeat|Simple_repeat	7379	NR_146922	105373199		NR_146922	ENSG00000225919	LINC01745	-	long intergenic non-protein coding RNA 1745	ncRNA
35593	chr11	1750651	1751130	+	0	NA	promoter-TSS (NM_001170820)	promoter-TSS (NM_001170820)	-295	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
170242	chr3	184226601	184226800	+	0	NA	Intergenic	Intergenic	-3653	NM_138345	90113		NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
121568	chr19	47267151	47267250	+	0	NA	intron (NM_015603, intron 8 of 11)	AluY|SINE|Alu	-7223	NR_037675	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
27298	chr10	30432721	30435650	+	0	NA	promoter-TSS (NM_005204)	promoter-TSS (NM_005204)	1	NM_005204	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
176305	chr4	87389371	87389550	+	0	NA	intron (NM_016245, intron 1 of 6)	AluSq2|SINE|Alu	1728	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
132175	chr2	101793371	101793530	+	0	NA	intron (NM_001384572, intron 2 of 29)	intron (NM_001384572, intron 2 of 29)	95185	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
126339	chr2	27375651	27375950	+	0	NA	intron (NR_049788, intron 7 of 11)	intron (NR_049788, intron 7 of 11)	4644	NM_001201459	130557		NM_144631	ENSG00000163795	ZNF513	HMFT0656|RP58|Zfp513	zinc finger protein 513	protein-coding
143803	chr20	32462871	32463380	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	20365	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
167191	chr3	128198351	128198850	+	0	NA	intron (NM_021937, intron 1 of 6)	intron (NM_021937, intron 1 of 6)	-44686	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
101247	chr17	66290201	66290550	+	0	NA	Intergenic	Intergenic	-12238	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
59171	chr13	21676651	21677250	+	0	NA	intron (NM_002010, intron 1 of 2)	intron (NM_002010, intron 1 of 2)	5877	NM_002010	2254		NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
231249	chr9	129988051	129988450	+	0	NA	intron (NM_001363755, intron 2 of 15)	AluYe5|SINE|Alu	54939	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
12512	chr1	108209201	108209760	+	0	NA	Intergenic	L1PA7|LINE|L1	-9137	NM_013386	29957		NM_013386	ENSG00000085491	SLC25A24	APC1|SCAMC-1|SCAMC1	solute carrier family 25 member 24	protein-coding
116059	chr19	17222601	17222800	+	0	NA	Intergenic	AluYk4|SINE|Alu	-3526	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
101323	chr17	66666171	66666530	+	0	NA	intron (NM_002737, intron 5 of 16)	intron (NM_002737, intron 5 of 16)	-120722	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
238324	chrX	149528921	149529180	+	0	NA	intron (NR_027455, intron 9 of 9)	L1MDa|LINE|L1	10702	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
223524	chr8	144111471	144112500	+	0	NA	exon (NM_001316309, exon 13 of 24)	exon (NM_001316309, exon 13 of 24)	4246	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
11116	chr1	86393351	86394000	+	0	NA	intron (NM_020729, intron 1 of 17)	intron (NM_020729, intron 1 of 17)	2386	NM_001366784	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
117792	chr19	29840221	29840780	+	0	NA	Intergenic	Intergenic	28509	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
89733	chr16	89429571	89429730	+	0	NA	intron (NR_045839, intron 1 of 9)	intron (NR_045839, intron 1 of 9)	-1268	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
157712	chr22	46426271	46426430	+	0	NA	intron (NM_001378328, intron 5 of 34)	MLT1A0|LTR|ERVL-MaLR	90636	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
59878	chr13	30672671	30673030	+	0	NA	Intergenic	AluSg|SINE|Alu	38635	NM_001321534	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
109332	chr19	599651	600350	+	0	NA	intron (NM_001194, intron 1 of 7)	AluJo|SINE|Alu	10119	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
123988	chr19	55443471	55444000	+	0	NA	promoter-TSS (NM_001145176)	promoter-TSS (NM_001145176)	-872	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
213899	chr7	142474021	142474800	+	0	NA	promoter-TSS (NR_162121)	promoter-TSS (NR_162121)	-117	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
120693	chr19	45161571	45161730	+	0	NA	Intergenic	MIRb|SINE|MIR	-1500	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
147054	chr20	53678871	53679030	+	0	NA	Intergenic	Intergenic	70596	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
12388	chr1	101278671	101279330	+	0	NA	Intergenic	Intergenic	41981	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
8613	chr1	41650121	41650440	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-165597	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
129260	chr2	68381651	68381950	+	0	NA	intron (NM_002664, intron 3 of 8)	intron (NM_002664, intron 3 of 8)	16518	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
121596	chr19	47381771	47382680	+	0	NA	3' UTR (NM_014681, exon 17 of 17)	3' UTR (NM_014681, exon 17 of 17)	32910	NM_014681	9704		NM_014681	ENSG00000134815	DHX34	DDX34|HRH1	DExH-box helicase 34	protein-coding
199167	chr6	111745651	111746430	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	13091	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
7277	chr1	32375321	32375730	+	0	NA	intron (NR_125352, intron 9 of 11)	intron (NR_125352, intron 9 of 11)	12986	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
148128	chr20	63466601	63467000	+	0	NA	intron (NM_001382235, intron 1 of 16)	CpG	5855	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
136628	chr2	179045721	179046180	+	0	NA	intron (NM_173648, intron 2 of 23)	intron (NM_173648, intron 2 of 23)	4187	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
56856	chr12	120259151	120259880	+	0	NA	intron (NM_001080855, intron 1 of 11)	L1MC4|LINE|L1	6215	NM_002859	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
13347	chr1	113836671	113836830	+	0	NA	intron (NM_012411, intron 11 of 18)	AluJr|SINE|Alu	-19885	NR_037864	100287722		NR_037864	ENSG00000226167	AP4B1-AS1	-	AP4B1 antisense RNA 1	ncRNA
102358	chr17	75512771	75512930	+	0	NA	intron (NM_020753, intron 2 of 19)	AluSx1|SINE|Alu	2687	NM_020753	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
216952	chr8	22995801	22996000	+	0	NA	promoter-TSS (NM_001374791)	promoter-TSS (NM_001374791)	59	NM_001160037	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
37858	chr11	33742421	33743280	+	0	NA	3' UTR (NM_033406, exon 10 of 10)	3' UTR (NM_033406, exon 10 of 10)	-6371	NM_203329	966		NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
183100	chr5	74627471	74627830	+	0	NA	non-coding (NR_046318, exon 2 of 2)	non-coding (NR_046318, exon 2 of 2)	-12373	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
233268	chr9	137293721	137294630	+	0	NA	Intergenic	Intergenic	8096	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
20641	chr1	200029101	200029650	+	0	NA	intron (NM_003822, intron 1 of 6)	intron (NM_003822, intron 1 of 6)	1665	NM_205860	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
207075	chr7	39957571	39957730	+	0	NA	intron (NM_003718, intron 1 of 13)	intron (NM_003718, intron 1 of 13)	7290	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
185376	chr5	127752351	127752830	+	0	NA	intron (NM_001317938, intron 2 of 6)	L1PA3|LINE|L1	49199	NM_001317938	728586		NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
112747	chr19	7386501	7386900	+	0	NA	intron (NM_001367823, intron 10 of 28)	intron (NM_001367823, intron 10 of 28)	-8445	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
175111	chr4	54657201	54658050	+	0	NA	promoter-TSS (NM_000222)	promoter-TSS (NM_000222)	-332	NM_001385284	3815		NM_000222	ENSG00000157404	KIT	C-Kit|CD117|MASTC|PBT|SCFR	KIT proto-oncogene, receptor tyrosine kinase	protein-coding
138043	chr2	201414021	201414700	+	0	NA	intron (NM_015049, intron 2 of 15)	intron (NM_015049, intron 2 of 15)	37098	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
216602	chr8	22050651	22050830	+	0	NA	intron (NM_001323382, intron 1 of 15)	intron (NM_001323382, intron 1 of 15)	1809	NM_001323382	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
159482	chr3	14150451	14150950	+	0	NA	intron (NR_148951, intron 9 of 13)	L2b|LINE|L2	25648	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
140332	chr2	232539901	232540450	+	0	NA	intron (NM_005199, intron 2 of 11)	intron (NM_005199, intron 2 of 11)	483	NM_005199	1146		NM_005199	ENSG00000196811	CHRNG	ACHRG	cholinergic receptor nicotinic gamma subunit	protein-coding
37151	chr11	13560271	13560850	+	0	NA	Intergenic	L1PA3|LINE|L1	-64385	NM_001316352	5741		NM_000315	ENSG00000152266	PTH	FIH1|PTH1	parathyroid hormone	protein-coding
196113	chr6	42375871	42376750	+	0	NA	intron (NM_033502, intron 2 of 17)	MamTip2|DNA|hAT-Tip100	75741	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
201044	chr6	142148901	142149280	+	0	NA	intron (NM_001286372, intron 1 of 5)	L2c|LINE|L2	1827	NM_016485	51534		NM_016485	ENSG00000009844	VTA1	6orf55|C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1	vesicle trafficking 1	protein-coding
120794	chr19	45454521	45454780	+	0	NA	Intergenic	Intergenic	-3103	NM_001369413	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
8786	chr1	42916401	42917030	+	0	NA	Intergenic	LTR12C|LTR|ERV1	42153	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
104675	chr17	81498601	81498800	+	0	NA	Intergenic	AluJb|SINE|Alu	14099	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
86461	chr16	66939171	66939530	+	0	NA	exon (NM_001365408, exon 3 of 12)	exon (NM_001365408, exon 3 of 12)	3834	NM_198061	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
37410	chr11	17274001	17274230	+	0	NA	Intergenic	MER66B|LTR|ERV1	-2599	NM_001352666	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
50475	chr12	47774701	47774900	+	0	NA	intron (NM_017842, intron 1 of 2)	intron (NM_017842, intron 1 of 2)	1562	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
201450	chr6	148342571	148343000	+	0	NA	promoter-TSS (NM_001346506)	promoter-TSS (NM_001346506)	-53	NM_001346506	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
56021	chr12	110387151	110387450	+	0	NA	intron (NM_016238, intron 5 of 10)	(GA)n|Simple_repeat|Simple_repeat	14649	NM_001385210	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
77220	chr15	81000431	81003450	+	0	NA	5' UTR (NM_022566, exon 1 of 1)	5' UTR (NM_022566, exon 1 of 1)	1017	NM_022566	59274		NM_022566	ENSG00000140406	TLNRD1	MESDC1	talin rod domain containing 1	protein-coding
117547	chr19	21022551	21022650	+	0	NA	intron (NM_025189, intron 1 of 4)	intron (NM_025189, intron 1 of 4)	1943	NM_025189	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
50323	chr12	46752521	46752780	+	0	NA	Intergenic	L1MB2|LINE|L1	73347	NM_018018	55089		NM_018018	ENSG00000139209	SLC38A4	ATA3|NAT3|PAAT|SNAT4	solute carrier family 38 member 4	protein-coding
24910	chr10	1056101	1057430	+	0	NA	promoter-TSS (NR_134300)	promoter-TSS (NR_134300)	-61	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
198194	chr6	96897101	96898830	+	0	NA	promoter-TSS (NM_001323258)	promoter-TSS (NM_001323258)	-74	NM_014165	29078		NM_014165	ENSG00000123545	NDUFAF4	C6orf66|HRPAP20|HSPC125|MC1DN15|My013|bA22L21.1	NADH:ubiquinone oxidoreductase complex assembly factor 4	protein-coding
62227	chr13	98519301	98519500	+	0	NA	exon (NM_001032296, exon 2 of 11)	exon (NM_001032296, exon 2 of 11)	2725	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
72023	chr15	28105101	28105650	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-6060	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
86800	chr16	67829571	67830100	+	0	NA	exon (NM_025082, exon 12 of 16)	exon (NM_025082, exon 12 of 16)	-12485	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
61550	chr13	60431101	60431550	+	0	NA	intron (NM_001146070, intron 1 of 13)	intron (NM_001146070, intron 1 of 13)	34105	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
230640	chr9	128663071	128663430	+	0	NA	Intergenic	Intergenic	-6400	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
68629	chr14	89719171	89719600	+	0	NA	Intergenic	AluSp|SINE|Alu	-100220	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
13149	chr1	111693771	111694100	+	0	NA	intron (NM_002884, intron 2 of 7)	AluJr|SINE|Alu	29141	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
173942	chr4	25854621	25855880	+	0	NA	intron (NM_001297592, intron 1 of 23)	intron (NM_001297592, intron 1 of 23)	7738	NM_015187	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
29055	chr10	67855351	67856200	+	0	NA	Intergenic	Intergenic	-17587	NM_021800	56521		NM_021800	ENSG00000108176	DNAJC12	HPANBH4|JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
130146	chr2	74885671	74885830	+	0	NA	intron (NM_001371525, intron 13 of 17)	L2a|LINE|L2	-23381	NR_125792	102724515		NR_125792	ENSG00000204792	LINC01291	LINC01293	long intergenic non-protein coding RNA 1291	ncRNA
169089	chr3	154317071	154317900	+	0	NA	intron (NM_020865, intron 1 of 24)	intron (NM_020865, intron 1 of 24)	7002	NM_020865	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
229183	chr9	114600401	114600800	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-10691	NM_001330760	203197		NM_153045	ENSG00000157693	TMEM268	C9orf91	transmembrane protein 268	protein-coding
70582	chr14	102612501	102612950	+	0	NA	intron (NM_015156, intron 2 of 11)	AluJr|SINE|Alu	20076	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
166064	chr3	108830371	108830750	+	0	NA	intron (NM_001317747, intron 1 of 4)	intron (NM_001317747, intron 1 of 4)	7774	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
154987	chr22	37302751	37303050	+	0	NA	intron (NM_001318024, intron 7 of 12)	intron (NM_001318024, intron 7 of 12)	20392	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
123576	chr19	54455451	54455950	+	0	NA	intron (NM_001375640, intron 8 of 14).3	intron (NM_001375640, intron 8 of 14).3	6043	NM_001375640	114823		NM_052925	ENSG00000167615	LENG8	pp13842	leukocyte receptor cluster member 8	protein-coding
138376	chr2	204000651	204001150	+	0	NA	Intergenic	Intergenic	64137	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
52018	chr12	53984751	53985430	+	0	NA	promoter-TSS (NM_017409)	promoter-TSS (NM_017409)	-56	NM_017409	3226		NM_017409	ENSG00000180818	HOXC10	HOX3I	homeobox C10	protein-coding
230996	chr9	129500071	129500230	+	0	NA	intron (NR_038955, intron 2 of 4)	MIRb|SINE|MIR	11490	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
147440	chr20	58911301	58911500	+	0	NA	TTS (NM_001077490)	TTS (NM_001077490)	19237	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
163627	chr3	52052651	52054000	+	0	NA	intron (NM_001947, intron 2 of 2)	intron (NM_001947, intron 2 of 2)	3246	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
31785	chr10	98262371	98262830	+	0	NA	intron (NM_032211, intron 2 of 14)	L2b|LINE|L2	5594	NM_032211	84171		NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
20010	chr1	185294971	185295130	+	0	NA	Intergenic	Intergenic	22193	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
49320	chr12	21657041	21658630	+	0	NA	promoter-TSS (NM_002300)	promoter-TSS (NM_002300)	7	NM_002300	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
211879	chr7	111090871	111091430	+	0	NA	promoter-TSS (NM_001099658)	promoter-TSS (NM_001099658)	23	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
87438	chr16	70740371	70740730	+	0	NA	intron (NM_001351157, intron 12 of 17)	intron (NM_001351157, intron 12 of 17)	-14545	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
185043	chr5	115815071	115815450	+	0	NA	intron (NM_001323565, intron 1 of 5)	intron (NM_001323565, intron 1 of 5)	1399	NR_136618	1036		NM_001801	ENSG00000129596	CDO1	CDO-I	cysteine dioxygenase type 1	protein-coding
151057	chr21	44707221	44707500	+	0	NA	intron (NM_001272037, intron 1 of 12)	(AGAGGC)n|Simple_repeat|Simple_repeat	4212	NM_144991	54084		NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|ECTD14|STHAG10|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding
184445	chr5	99187701	99187930	+	0	NA	Intergenic	Intergenic	258681	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
7225	chr1	32321871	32323350	+	0	NA	intron (NM_004964, intron 3 of 13)	intron (NM_004964, intron 3 of 13)	13623	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
157441	chr22	45237621	45237880	+	0	NA	intron (NM_001009880, intron 1 of 9)	intron (NM_001009880, intron 1 of 9)	3144	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
78745	chr15	98865051	98865600	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	80899	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
66642	chr14	63866171	63866330	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	13246	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
152512	chr22	20955671	20956030	+	0	NA	Intergenic	AluSx|SINE|Alu	-1242	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
220318	chr8	98828771	98828930	+	0	NA	intron (NM_001256312, intron 3 of 12)	L2c|LINE|L2	-3162	NM_006281	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
112592	chr19	6709621	6710030	+	0	NA	exon (NM_000064, exon 14 of 41)	exon (NM_000064, exon 14 of 41)	10825	NM_000064	718		NM_000064	ENSG00000125730	C3	AHUS5|ARMD9|ASP|C3a|C3b|CPAMD1|HEL-S-62p	complement C3	protein-coding
190403	chr5	179809301	179809930	+	0	NA	intron (NM_001142299, intron 1 of 8)	AluSx3|SINE|Alu	2606	NM_001142299	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
70318	chr14	101829071	101829930	+	0	NA	intron (NM_001161725, intron 3 of 15)	intron (NM_001161725, intron 3 of 15)	19637	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
228090	chr9	96418201	96419550	+	0	NA	promoter-TSS (NM_153695)	promoter-TSS (NM_153695)	-505	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
43763	chr11	86214721	86215000	+	0	NA	Intergenic	Intergenic	-29524	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
227897	chr9	93962821	93963400	+	0	NA	Intergenic	Intergenic	7276	NR_144455	101928040		NR_144455	ENSG00000235601	BARX1-DT	BARX1-AS1	BARX1 divergent transcript	ncRNA
23086	chr1	226655241	226655930	+	0	NA	TTS (NR_103784)	TTS (NR_103784)	19483	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
230968	chr9	129459001	129459570	+	0	NA	Intergenic	Intergenic	-29375	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
179613	chr4	185827121	185827600	+	0	NA	intron (NM_021069, intron 1 of 20)	(TCATCATCA)n|Simple_repeat|Simple_repeat	-15104	NM_001145670	8470		NM_003603	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
51574	chr12	52612421	52612680	+	0	NA	non-coding (NR_126005, exon 2 of 3)	non-coding (NR_126005, exon 2 of 3)	2699	NR_126005	100127967		NR_126005	ENSG00000257495	KRT73-AS1	-	KRT73 antisense RNA 1	ncRNA
159995	chr3	18351951	18352050	+	0	NA	exon (NM_001322872, exon 11 of 12)	exon (NM_001322872, exon 11 of 12)	73339	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
119915	chr19	41656851	41657430	+	0	NA	Intergenic	L1PA7|LINE|L1	-30066	NM_001362493	1089		NM_001817	ENSG00000105352	CEACAM4	CGM7|CGM7_HUMAN|NCA	CEA cell adhesion molecule 4	protein-coding
182712	chr5	68242471	68242980	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	26969	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
177484	chr4	113906221	113906480	+	0	NA	intron (NM_001354210, intron 1 of 2)	L3|LINE|CR1	73297	NM_001354210	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
41929	chr11	67295371	67295530	+	0	NA	intron (NM_207354, intron 6 of 14)	AluSx1|SINE|Alu	6147	NM_001347901	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
45921	chr11	120875851	120876350	+	0	NA	intron (NM_001282473, intron 11 of 17)	L3b|LINE|CR1	18697	NR_132790	101929227		NR_132790	ENSG00000250493	LOC101929227	-	uncharacterized LOC101929227	ncRNA
160118	chr3	19955871	19956230	+	0	NA	intron (NM_001292048, intron 2 of 5)	intron (NM_001292048, intron 2 of 5)	8953	NM_004162	5868		NM_004162	ENSG00000144566	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
23273	chr1	227945571	227945730	+	0	NA	intron (NM_003395, intron 1 of 3)	intron (NM_003395, intron 1 of 3)	2282	NM_003395	7483		NM_003395	ENSG00000143816	WNT9A	WNT14	Wnt family member 9A	protein-coding
134171	chr2	134256901	134257500	+	0	NA	intron (NM_001371457, intron 2 of 16)	intron (NM_001371457, intron 2 of 16)	3128	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
114123	chr19	11157551	11157850	+	0	NA	Intergenic	Intergenic	-1888	NM_001317032	147841		NM_182513	ENSG00000161888	SPC24	SPBC24	SPC24 component of NDC80 kinetochore complex	protein-coding
185349	chr5	127011951	127012050	+	0	NA	intron (NM_178450, intron 1 of 4)	intron (NM_178450, intron 1 of 4)	18558	NM_178450	115123		NM_178450	ENSG00000173926	MARCHF3	MARCH-III|MARCH3|RNF173	membrane associated ring-CH-type finger 3	protein-coding
88137	chr16	81622421	81622680	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	11202	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
158354	chr22	50462221	50462880	+	0	NA	intron (NM_002972, intron 18 of 40)	intron (NM_002972, intron 18 of 40)	12485	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
103138	chr17	77398671	77398830	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	-1696	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
10436	chr1	66242701	66243130	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-89193	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
25680	chr10	8424751	8425530	+	0	NA	Intergenic	Intergenic	-156835	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
82559	chr16	18569401	18569800	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-1648	NR_003569	653190		NR_003569	ENSG00000291057	ABCC6P1	-	ATP binding cassette subfamily C member 6 pseudogene 1	pseudo
65066	chr14	39395601	39395900	+	0	NA	TTS (NM_203301)	TTS (NM_203301)	36750	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
199239	chr6	111827771	111828230	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	45071	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
93082	chr17	17625351	17625650	+	0	NA	Intergenic	Intergenic	-33792	NM_001267551	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
198929	chr6	110366151	110366530	+	0	NA	Intergenic	Intergenic	-8068	NM_001123364	728464		NM_001123364	ENSG00000053328	METTL24	C6orf186	methyltransferase like 24	protein-coding
162893	chr3	49391101	49391900	+	0	NA	intron (NM_001313943, intron 1 of 5)	intron (NM_001313943, intron 1 of 5)	20476	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
3273	chr1	15219371	15219530	+	0	NA	exon (NM_001136218, exon 4 of 4)	exon (NM_001136218, exon 4 of 4)	-27775	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
173024	chr4	4508001	4508250	+	0	NA	intron (NM_001346282, intron 1 of 10)	Helitron3Na_Mam|RC|Helitron	-26425	NR_126434	104472519		NR_126434	ENSG00000248221	STX18-IT1	-	STX18 intronic transcript 1	ncRNA
216420	chr8	19314451	19314550	+	0	NA	intron (NM_001174159, intron 1 of 9)	CpG	524	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
69414	chr14	94063271	94063830	+	0	NA	intron (NM_020414, intron 2 of 8).2	L1MEc|LINE|L1	17652	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
117825	chr19	30227551	30228100	+	0	NA	promoter-TSS (NM_001376111)	promoter-TSS (NM_001376111)	-685	NM_001376111	9745		NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
235935	chrX	53197521	53198880	+	0	NA	TTS (NR_106954)	TTS (NR_106954)	745	NR_106954	102466759		NR_106954	ENSG00000277474	MIR6894	hsa-mir-6894	microRNA 6894	ncRNA
179714	chr5	13251	13350	+	0	NA	Intergenic	TAR1|Satellite|telo	-78868	NM_052909	153478		NM_052909	ENSG00000153404	PLEKHG4B	ARHGEF48	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
63695	chr14	21095401	21095600	+	0	NA	intron (NM_001102454, intron 1 of 4)	MIR3|SINE|MIR	3155	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
203409	chr7	159851	160030	+	0	NA	Intergenic	CpG	10222	NR_108064	100507642		NR_108064	ENSG00000240859	LINC03014	-	long intergenic non-protein coding RNA 3014	ncRNA
176667	chr4	100106721	100107300	+	0	NA	Intergenic	LTR78|LTR|ERV1	-83023	NR_125924	101929353		NR_125924	ENSG00000249710	DDIT4L-AS1	-	DDIT4L antisense RNA 1	ncRNA
133407	chr2	118846201	118846600	+	0	NA	exon (NM_001426, exon 1 of 2)	exon (NM_001426, exon 1 of 2)	1248	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
120288	chr19	43450421	43450880	+	0	NA	Intergenic	Intergenic	14958	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
169383	chr3	160451601	160451930	+	0	NA	intron (NR_148403, intron 1 of 20)	intron (NR_148403, intron 1 of 20)	-1927	NR_148402	100174949		NR_148401	ENSG00000248710	TRIM59-IFT80	IFT80-L	TRIM59-IFT80 readthrough (NMD candidate)	ncRNA
208841	chr7	73696501	73697950	+	0	NA	intron (NR_045512, intron 9 of 10)	intron (NR_045512, intron 9 of 10)	13628	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
222842	chr8	142613951	142614910	+	0	NA	promoter-TSS (NM_015193)	promoter-TSS (NM_015193)	49	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
83035	chr16	22312451	22312750	+	0	NA	intron (NM_018119, intron 6 of 20).2	AluSc8|SINE|Alu	15191	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
79166	chr16	287621	288050	+	0	NA	TTS (NM_006849)	TTS (NM_006849)	4671	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
227436	chr9	90099371	90099530	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-57951	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
60531	chr13	41451501	41451700	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-5950	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
99269	chr17	49743621	49743880	+	0	NA	intron (NM_030802, intron 1 of 7)	AluY|SINE|Alu	20381	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
231276	chr9	130019101	130019430	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluSc|SINE|Alu	23924	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
63660	chr14	21023001	21023550	+	0	NA	TTS (NR_106774)	TTS (NR_106774)	111	NR_106774	102465428		NR_106774	ENSG00000284122	MIR6717	hsa-mir-6717	microRNA 6717	ncRNA
67346	chr14	69673251	69674150	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	62104	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
64810	chr14	34981701	34983680	+	0	NA	promoter-TSS (NM_003136)	promoter-TSS (NM_003136)	-124	NR_151701	100506157		NR_151701		SRP54-AS1	-	SRP54 antisense RNA 1	ncRNA
196360	chr6	43228871	43230100	+	0	NA	promoter-TSS (NM_199184)	promoter-TSS (NM_199184)	-4	NM_006443	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
182831	chr5	69219421	69220130	+	0	NA	intron (NM_033281, intron 1 of 3)	FRAM|SINE|Alu	2015	NM_033281	92259		NM_033281	ENSG00000134056	KGD4	DC47|MRP-S36|MRPS36	alpha-ketoglutarate dehydrogenase subunit 4	protein-coding
53180	chr12	59598351	59598450	+	0	NA	intron (NM_001270622, intron 1 of 5)	intron (NM_001270622, intron 1 of 5)	2371	NM_001270622	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
100976	chr17	64538071	64538230	+	0	NA	TTS (NM_001316990)	TTS (NM_001316990)	31173	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
73710	chr15	45129051	45129380	+	0	NA	promoter-TSS (NM_017434)	promoter-TSS (NM_017434)	664	NM_001276266	90527		NM_144565	ENSG00000140254	DUOXA1	NIP|NUMBIP|mol	dual oxidase maturation factor 1	protein-coding
208396	chr7	66690501	66691430	+	0	NA	intron (NM_001367745, intron 1 of 7)	AluSz|SINE|Alu	8799	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
163452	chr3	50604971	50605500	+	0	NA	Intergenic	Intergenic	6539	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
194844	chr6	34423951	34424250	+	0	NA	intron (NM_001203245, intron 3 of 5)	intron (NM_001203245, intron 3 of 5)	1969	NM_001204091	6204		NM_001014	ENSG00000124614	RPS10	DBA9|S10|eS10	ribosomal protein S10	protein-coding
196905	chr6	52341851	52342150	+	0	NA	Intergenic	L1MD2|LINE|L1	-20151	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
28164	chr10	43622151	43622450	+	0	NA	Intergenic	AluSx|SINE|Alu	-6517	NR_038867	414201		NR_038867	ENSG00000223910	ZNF32-AS3	C10orf44|ZNF32-OT1|bA402L1.3	ZNF32 antisense RNA 3	ncRNA
211897	chr7	111741771	111742000	+	0	NA	intron (NM_014705, intron 44 of 51)	intron (NM_014705, intron 44 of 51)	-66620	NR_103806	100506413		NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
29238	chr10	69094701	69095130	+	0	NA	intron (NM_001321054, intron 1 of 1)	(TTATTT)n|Simple_repeat|Simple_repeat	6812	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
182516	chr5	65164201	65164530	+	0	NA	intron (NM_197941, intron 24 of 24)	L1PA2|LINE|L1	317555	NR_135689	11174		NM_014273	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein-coding
115951	chr19	16771521	16771950	+	0	NA	intron (NM_001290355, intron 11 of 20)	intron (NM_001290355, intron 11 of 20)	40543	NM_001347994	284434		NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
125904	chr2	24824971	24825530	+	0	NA	intron (NM_001377130, intron 13 of 18)	intron (NM_001377130, intron 13 of 18)	31825	NM_001199803	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
8737	chr1	42691951	42692430	+	0	NA	intron (NM_004559, intron 2 of 7)	intron (NM_004559, intron 2 of 7)	9054	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
180490	chr5	14144371	14145750	+	0	NA	intron (NR_134469, intron 1 of 56)	CpG	1718	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
142685	chr20	7121671	7121850	+	0	NA	Intergenic	L1HS|LINE|L1	132442	NR_110609	101929265		NR_110609	ENSG00000228888	LINC01428	-	long intergenic non-protein coding RNA 1428	ncRNA
5229	chr1	24996121	24996730	+	0	NA	Intergenic	L2c|LINE|L2	-27078	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
11093	chr1	85294071	85294230	+	0	NA	Intergenic	Intergenic	-17518	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
110838	chr19	2517771	2518780	+	0	NA	intron (NM_052847, intron 4 of 4)	intron (NM_052847, intron 4 of 4)	42148	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
233323	chr9	137430051	137430630	+	0	NA	intron (NM_006647, intron 5 of 13)	intron (NM_006647, intron 5 of 13)	6945	NM_001256068	10811		NM_006647	ENSG00000188747	NOXA1	NY-CO-31|SDCCAG31|p51NOX	NADPH oxidase activator 1	protein-coding
180761	chr5	32152121	32152580	+	0	NA	intron (NM_022130, intron 1 of 3)	AluSg|SINE|Alu	21969	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
228523	chr9	100428651	100428950	+	0	NA	promoter-TSS (NM_001198806)	promoter-TSS (NM_001198806)	-714	NM_001198806	91283		NM_080655	ENSG00000066697	MSANTD3	C9orf30|L8	Myb/SANT DNA binding domain containing 3	protein-coding
98853	chr17	48455901	48456100	+	0	NA	intron (NR_110804, intron 5 of 5)	UCON132b|DNA|hAT-Tip100	11167	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
112768	chr19	7448971	7449430	+	0	NA	intron (NM_001367823, intron 15 of 28)	intron (NM_001367823, intron 15 of 28)	9512	NM_001130955	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
67508	chr14	70957871	70958030	+	0	NA	intron (NM_014982, intron 2 of 35)	intron (NM_014982, intron 2 of 35)	50491	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
196655	chr6	44306701	44306900	+	0	NA	intron (NM_020745, intron 7 of 21)	intron (NM_020745, intron 7 of 21)	6547	NM_020745	57505		NM_020745	ENSG00000124608	AARS2	AARSL|COXPD8|LKENP|MT-ALARS|MTALARS	alanyl-tRNA synthetase 2, mitochondrial	protein-coding
103249	chr17	77542651	77543050	+	0	NA	Intergenic	Intergenic	-4091	NR_040050	100507351		NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
142418	chr20	3895901	3896280	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluY|SINE|Alu	6274	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
125654	chr2	19989551	19990430	+	0	NA	promoter-TSS (NR_110235)	promoter-TSS (NR_110235)	115	NM_020779	57539		NM_020779	ENSG00000118965	WDR35	CED2|CFAP118|FAP118|IFT121|IFTA1|SRTD7	WD repeat domain 35	protein-coding
213371	chr7	135929221	135929480	+	0	NA	5' UTR (NM_001128619, exon 4 of 4)	5' UTR (NM_001128619, exon 4 of 4)	48009	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
115601	chr19	16046951	16047050	+	0	NA	Intergenic	AluSx|SINE|Alu	12880	NR_110321	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
233247	chr9	137262071	137262580	+	0	NA	intron (NM_015456, intron 4 of 12)	LTR13|LTR|ERVK	6998	NM_015456	25920		NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
29989	chr10	73747221	73747480	+	0	NA	intron (NM_198597, intron 2 of 22)	AluSg7|SINE|Alu	2978	NM_198597	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
24635	chr1	246696501	246696900	+	0	NA	Intergenic	Intergenic	-27709	NM_016002	51097		NM_016002	ENSG00000143653	SCCPDH	CGI-49|NET11	saccharopine dehydrogenase (putative)	protein-coding
148804	chr21	8244471	8244770	+	0	NA	intron (NR_003287, intron 1 of 2)	AluY|SINE|Alu	-4885	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
59677	chr13	28819771	28820580	+	0	NA	promoter-TSS (NM_001366651)	promoter-TSS (NM_001366651)	-164	NM_001033602	23281		NM_015233	ENSG00000132938	MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated scaffold protein 2	protein-coding
115865	chr19	16557601	16558000	+	0	NA	intron (NM_024881, intron 4 of 5)	L1MD1|LINE|L1	14615	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
149976	chr21	36699651	36700150	+	0	NA	exon (NM_009586, exon 1 of 10)	exon (NM_009586, exon 1 of 10)	785	NM_009586	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
59368	chr13	24684501	24685250	+	0	NA	intron (NM_001185085, intron 2 of 22)	intron (NM_001185085, intron 2 of 22)	4464	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
121825	chr19	47952151	47952450	+	0	NA	Intergenic	AluY|SINE|Alu	2004	NR_024221	100170226		NR_024221		SNAR-C3	-	small NF90 (ILF3) associated RNA C3	snRNA
199148	chr6	111726351	111726450	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	32731	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
234695	chrX	20414651	20415000	+	0	NA	Intergenic	Intergenic	-147916	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
42233	chr11	68053971	68054280	+	0	NA	intron (NM_212469, intron 10 of 10)	intron (NM_212469, intron 10 of 10)	9331	NR_106811	102465451		NR_106811	ENSG00000275022	MIR6753	hsa-mir-6753	microRNA 6753	ncRNA
41205	chr11	65655651	65655750	+	0	NA	exon (NM_001243985, exon 10 of 12)	exon (NM_001243985, exon 10 of 12)	6508	NR_039709	100616284		NR_039709	ENSG00000265874	MIR4489	mir-4489	microRNA 4489	ncRNA
97084	chr17	42405851	42406700	+	0	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	16981	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
133044	chr2	112166901	112167100	+	0	NA	intron (NM_153214, intron 3 of 7)	L1ME5|LINE|L1	28615	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
160220	chr3	23942401	23943000	+	0	NA	intron (NM_001377380, intron 1 of 4)	AluSp|SINE|Alu	-2586	NM_005126	9975		NM_005126	ENSG00000174738	NR1D2	BD73|EAR-1R|REVERBB|REVERBbeta|RVR	nuclear receptor subfamily 1 group D member 2	protein-coding
84686	chr16	30773921	30774550	+	0	NA	3' UTR (NM_001286572, exon 20 of 20)	3' UTR (NM_001286572, exon 20 of 20)	11913	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
195056	chr6	35499721	35499980	+	0	NA	intron (NM_001289395, intron 13 of 13)	intron (NM_001289395, intron 13 of 13)	-2771	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
37657	chr11	22703151	22703250	+	0	NA	intron (NM_001351224, intron 3 of 8)	intron (NM_001351224, intron 3 of 8)	28426	NM_005256	2620		NM_005256	ENSG00000148935	GAS2	GAS-2	growth arrest specific 2	protein-coding
191173	chr6	4942151	4942930	+	0	NA	intron (NM_001368125, intron 6 of 8)	intron (NM_001368125, intron 6 of 8)	52500	NM_001143971	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
3113	chr1	12275371	12275850	+	0	NA	intron (NM_018156, intron 18 of 68)	intron (NM_018156, intron 18 of 68)	45580	NM_018156	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
211436	chr7	105067621	105068330	+	0	NA	intron (NM_182931, intron 6 of 26)	AluJb|SINE|Alu	53770	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
125753	chr2	20868401	20868680	+	0	NA	Intergenic	Intergenic	-45410	NM_001282723	60526		NM_021925	ENSG00000118961	LDAH	C2orf43|hLDAH	lipid droplet associated hydrolase	protein-coding
68321	chr14	77500171	77500330	+	0	NA	Intergenic	Intergenic	-1434	NM_182509	145501		NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2	protein-coding
96474	chr17	40249471	40249630	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSp|SINE|Alu	30246	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
152133	chr22	19969571	19969730	+	0	NA	TTS (NM_001670)	TTS (NM_001670)	5897	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
101268	chr17	66334021	66334480	+	0	NA	intron (NM_002737, intron 2 of 16)	AluSx|SINE|Alu	31637	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
20147	chr1	192582951	192583450	+	0	NA	Intergenic	Intergenic	7427	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
47030	chr12	401171	402150	+	0	NA	promoter-TSS (NM_001130146)	promoter-TSS (NM_001130146)	16	NM_032358	84318		NM_032358	ENSG00000120647	CCDC77	-	coiled-coil domain containing 77	protein-coding
34327	chr10	132166451	132166750	+	0	NA	intron (NM_001323086, intron 21 of 23)	intron (NM_001323086, intron 21 of 23)	-20348	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
121547	chr19	47249801	47250350	+	0	NA	Intergenic	Intergenic	-6450	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
80860	chr16	3556201	3556700	+	0	NA	intron (NR_075083, intron 8 of 20)	intron (NR_075083, intron 8 of 20)	20953	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
19221	chr1	172537751	172538100	+	0	NA	intron (NM_001282751, intron 1 of 21)	intron (NM_001282751, intron 1 of 21)	4775	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
203224	chr6	168615251	168615550	+	0	NA	intron (NM_022138, intron 9 of 12)	TAR1|Satellite|telo	174216	NM_022138	64094		NM_022138	ENSG00000112562	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
58533	chr12	132226471	132226700	+	0	NA	intron (NM_001122636, intron 6 of 10)	(CA)n|Simple_repeat|Simple_repeat	-20557	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
104941	chr17	81936101	81936300	+	0	NA	intron (NM_153824, intron 1 of 7)	intron (NM_153824, intron 1 of 7)	1100	NM_153824	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
109689	chr19	1043421	1044280	+	0	NA	intron (NM_019112, intron 10 of 46)	intron (NM_019112, intron 10 of 46)	3743	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
170126	chr3	183285521	183286580	+	0	NA	intron (NM_015078, intron 14 of 29)	intron (NM_015078, intron 14 of 29)	32797	NM_032047	84002		NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
107487	chr18	47215601	47215800	+	0	NA	intron (NM_001278063, intron 7 of 8)	intron (NM_001278063, intron 7 of 8)	35960	NM_001037802	652991		NM_001037802	ENSG00000215474	SKOR2	CH18515|CORL2|FUSSEL18	SKI family transcriptional corepressor 2	protein-coding
133922	chr2	130370071	130370930	+	0	NA	intron (NM_014369, intron 8 of 14)	intron (NM_014369, intron 8 of 14)	14444	NM_014369	26469		NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase non-receptor type 18	protein-coding
237489	chrX	119878351	119879130	+	0	NA	Intergenic	Intergenic	6908	NM_004541	4694		NM_004541	ENSG00000125356	NDUFA1	CI-MWFE|MC1DN12|MWFE|ZNF183	NADH:ubiquinone oxidoreductase subunit A1	protein-coding
165473	chr3	98901101	98902130	+	0	NA	promoter-TSS (NM_080927)	promoter-TSS (NM_080927)	80	NM_080927	131566		NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	discoidin, CUB and LCCL domain containing 2	protein-coding
140717	chr2	234422401	234423480	+	0	NA	Intergenic	Helitron1Nb_Mam|RC|Helitron	31655	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
164075	chr3	53927171	53927330	+	0	NA	Intergenic	L1PA2|LINE|L1	-35391	NM_021237	58515		NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
110467	chr19	2012451	2012750	+	0	NA	intron (NM_017797, intron 1 of 8)	Tigger2|DNA|TcMar-Tigger	3114	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
80895	chr16	3721171	3721750	+	0	NA	Intergenic	AluSq|SINE|Alu	-3936	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
80401	chr16	2592771	2593100	+	0	NA	intron (NM_001261816, intron 11 of 11)	intron (NM_001261816, intron 11 of 11)	-10449	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
115739	chr19	16266371	16267400	+	0	NA	Intergenic	Intergenic	-57941	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
183157	chr5	75077871	75078430	+	0	NA	intron (NM_001164443, intron 24 of 24)	intron (NM_001164443, intron 24 of 24)	-25592	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
126682	chr2	30072271	30072500	+	0	NA	Intergenic	Intergenic	-74622	NM_001127401	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
101296	chr17	66425901	66426720	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-9456	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
109560	chr19	885251	885750	+	0	NA	intron (NM_005481, intron 5 of 15)	MLT1D|LTR|ERVL-MaLR	7687	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
219061	chr8	65804701	65806080	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	-16333	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
39662	chr11	61681721	61682350	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	1644	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
106763	chr18	23619121	23619880	+	0	NA	intron (NM_173505, intron 7 of 9)	CpG	-32994	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
4859	chr1	23740901	23741300	+	0	NA	Intergenic	AluSz|SINE|Alu	-2266	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
150561	chr21	43099621	43099880	+	0	NA	intron (NM_001025203, intron 3 of 7).2	intron (NM_001025203, intron 3 of 7).2	7820	NM_006758	7307		NM_006758	ENSG00000160201	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
208368	chr7	66631371	66632980	+	0	NA	intron (NM_153033, intron 1 of 3)	intron (NM_153033, intron 1 of 3)	3294	NM_153033	154881		NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
95873	chr17	38855171	38856030	+	0	NA	Intergenic	Intergenic	-1879	NM_000978	9349		NM_000978	ENSG00000125691	RPL23	L23|rpL17|uL14	ribosomal protein L23	protein-coding
123772	chr19	55106421	55106950	+	0	NA	intron (NM_017607, intron 3 of 21)	intron (NM_017607, intron 3 of 21)	10952	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
32185	chr10	101589571	101589730	+	0	NA	intron (NM_001329746, intron 1 of 2)	AluSz|SINE|Alu	1329	NM_001329745	25911		NM_015448	ENSG00000166171	DPCD	-	deleted in primary ciliary dyskinesia homolog (mouse)	protein-coding
83258	chr16	23947901	23948200	+	0	NA	intron (NM_212535, intron 2 of 16)	MLT1N2|LTR|ERVL-MaLR	112067	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
87793	chr16	75460401	75460780	+	0	NA	intron (NM_001304998, intron 1 of 2)	L2a|LINE|L2	3853	NM_001304997	124491		NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
227879	chr9	93827321	93827930	+	0	NA	Intergenic	Intergenic	8268	NR_036254	100422927		NR_036254	ENSG00000265347	MIR4291	-	microRNA 4291	ncRNA
69889	chr14	99389051	99389550	+	0	NA	Intergenic	Intergenic	91559	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
70786	chr14	103524071	103525250	+	0	NA	Intergenic	Intergenic	-1830	NM_001823	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
140689	chr2	234272121	234273080	+	0	NA	Intergenic	L1ME3A|LINE|L1	181995	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
213658	chr7	139820071	139820430	+	0	NA	intron (NM_001166254, intron 3 of 14)	MamRTE1|LINE|RTE-BovB	-9014	NM_030984	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
50116	chr12	44948651	44949100	+	0	NA	Intergenic	Intergenic	-34947	NM_001145110	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
71088	chr14	104867751	104868250	+	0	NA	intron (NM_015005, intron 1 of 17)	intron (NM_015005, intron 1 of 17)	2686	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
204191	chr7	2495601	2495800	+	0	NA	Intergenic	Intergenic	-16829	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
106664	chr18	23114221	23114480	+	0	NA	Intergenic	Intergenic	-20214	NR_023359	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
59924	chr13	31133601	31134650	+	0	NA	TTS (NM_001286505)	TTS (NM_001286505)	27779	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
157337	chr22	44663151	44663250	+	0	NA	Intergenic	AluSz|SINE|Alu	-5347	NM_001017529	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
109717	chr19	1074071	1075950	+	0	NA	intron (NM_012292, intron 10 of 22)	CpG-12983	-1624	NM_001282334	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
233029	chr9	137031611	137032600	+	0	NA	promoter-TSS (NM_004479)	promoter-TSS (NM_004479)	-17	NM_004479	2529		NM_004479	ENSG00000180549	FUT7	FucT-VII	fucosyltransferase 7	protein-coding
85916	chr16	57086221	57086550	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-6198	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
60777	chr13	45153021	45153150	+	0	NA	intron (NM_004128, intron 4 of 7)	AluY|SINE|Alu	32575	NM_004128	2963		NM_004128	ENSG00000188342	GTF2F2	BTF4|RAP30|TF2F2|TFIIF	general transcription factor IIF subunit 2	protein-coding
49579	chr12	26984371	26984730	+	0	NA	intron (NM_016551, intron 6 of 11)	intron (NM_016551, intron 6 of 11)	29834	NM_016551	51768		NM_016551	ENSG00000064115	TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
103027	chr17	77056001	77056700	+	0	NA	Intergenic	CpG	-32293	NR_027058	654434		NR_027058	ENSG00000234912	SNHG20	C17orf86|LINC00338|NCRNA00338|SCARNA16HG	small nucleolar RNA host gene 20	ncRNA
152716	chr22	21651301	21653600	+	0	NA	promoter-TSS (NR_030622)	promoter-TSS (NR_030622)	269	NR_169731	107985532		NR_169729		LOC107985532	-	uncharacterized LOC107985532	pseudo
112796	chr19	7487801	7488030	+	0	NA	intron (NM_001300881, intron 1 of 4)	intron (NM_001300881, intron 1 of 4)	1120	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
21380	chr1	205215271	205215450	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3658	NM_015375	25778		NM_015375	ENSG00000133059	DSTYK	CAKUT1|DustyPK|HDCMD38P|RHDNS1|RIP5|RIPK5|SPG23	dual serine/threonine and tyrosine protein kinase	protein-coding
3326	chr1	15420921	15421380	+	0	NA	intron (NM_024329, intron 1 of 3)	MIRb|SINE|MIR	11262	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
140560	chr2	233295151	233295650	+	0	NA	3' UTR (NM_001190267, exon 18 of 18)	3' UTR (NM_001190267, exon 18 of 18)	6724	NR_003006	677772		NR_003006	ENSG00000251791	SCARNA6	U88	small Cajal body-specific RNA 6	ncRNA
38048	chr11	35162751	35163050	+	0	NA	promoter-TSS (NR_145794)	promoter-TSS (NR_145794)	-50	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
213908	chr7	142499921	142500680	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	25773	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
136501	chr2	177236321	177237030	+	0	NA	intron (NM_001313902, intron 1 of 3)	MIR|SINE|MIR	19335	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
89498	chr16	89153171	89153830	+	0	NA	intron (NR_147928, intron 11 of 11)	intron (NR_147928, intron 11 of 11)	-5720	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
151000	chr21	44375021	44375700	+	0	NA	intron (NM_001320350, intron 5 of 32)	MLT1D-int|LTR|ERVL-MaLR	21759	NM_001320350	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
231138	chr9	129850551	129851050	+	0	NA	intron (NM_001110303, intron 2 of 25)	AluSp|SINE|Alu	15342	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
64545	chr14	24483851	24484150	+	0	NA	intron (NR_110032, intron 2 of 2)	intron (NR_110032, intron 2 of 2)	24265	NM_001308083	1215		NM_001836	ENSG00000092009	CMA1	CYH|MCT1|chymase	chymase 1	protein-coding
56699	chr12	120085751	120086250	+	0	NA	intron (NR_147894, intron 7 of 8)	(A)n|Simple_repeat|Simple_repeat	30753	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
88631	chr16	85627101	85628230	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	14343	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
147830	chr20	62738701	62738900	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	29964	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
200199	chr6	131183121	131183730	+	0	NA	intron (NR_164834, intron 5 of 9)	intron (NR_164834, intron 5 of 9)	47958	NR_164833	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
154680	chr22	36368221	36369000	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	19357	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
12716	chr1	109507071	109507230	+	0	NA	3' UTR (NM_020703, exon 2 of 2)	3' UTR (NM_020703, exon 2 of 2)	2577	NM_020703	57463		NM_020703	ENSG00000181754	AMIGO1	ALI2|AMIGO|AMIGO-1	adhesion molecule with Ig like domain 1	protein-coding
153353	chr22	24422071	24422230	+	0	NA	intron (NR_103546, intron 18 of 19)	intron (NR_103546, intron 18 of 19)	-1447	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
130197	chr2	84495551	84496000	+	0	NA	Intergenic	Intergenic	-20723	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
163920	chr3	52670551	52672130	+	0	NA	intron (NM_181042, intron 4 of 29)	intron (NM_181042, intron 4 of 29)	14259	NM_001350074	55193		NM_018313	ENSG00000163939	PBRM1	BAF180|PB1|RCC|SMARCH1	polybromo 1	protein-coding
48154	chr12	7927721	7928830	+	0	NA	intron (NM_006931, intron 6 of 9)	AluSc|SINE|Alu	7912	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
53833	chr12	69497451	69498030	+	0	NA	intron (NM_001278354, intron 2 of 9)	L2a|LINE|L2	-17700	NR_145803	109623461		NR_145803		SNORA113	-	small nucleolar RNA, H/ACA box 113	snoRNA
52353	chr12	55414801	55415120	+	0	NA	Intergenic	Intergenic	-11294	NM_001005183	390326		NM_001005183	ENSG00000185821	OR6C76	-	olfactory receptor family 6 subfamily C member 76	protein-coding
83778	chr16	28740801	28741500	+	0	NA	Intergenic	Intergenic	-11285	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
141334	chr2	240572351	240572730	+	0	NA	exon (NM_018226, exon 2 of 11)	exon (NM_018226, exon 2 of 11)	4056	NM_018226	57140		NM_018226	ENSG00000142327	RNPEPL1	-	arginyl aminopeptidase like 1	protein-coding
176648	chr4	99939071	99939230	+	0	NA	intron (NM_001031723, intron 1 of 7)	AluSx|SINE|Alu	7468	NM_001278311	79982		NM_024920	ENSG00000164031	DNAJB14	EGNR9427|PRO34683	DnaJ heat shock protein family (Hsp40) member B14	protein-coding
117596	chr19	21849701	21850100	+	0	NA	intron (NM_001256650, intron 1 of 5)	BSR/Beta|Satellite|Satellite	2165	NM_001256651	7594		NM_003423	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
157516	chr22	45340451	45340750	+	0	NA	non-coding (NR_146323, exon 12 of 12)	non-coding (NR_146323, exon 12 of 12)	22157	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
7117	chr1	32171751	32172050	+	0	NA	3' UTR (NM_012316, exon 14 of 14)	3' UTR (NM_012316, exon 14 of 14)	-7775	NM_175852	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
184835	chr5	111365071	111365230	+	0	NA	intron (NM_001323376, intron 2 of 8)	intron (NM_001323376, intron 2 of 8)	140766	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
200042	chr6	129730401	129731230	+	0	NA	Intergenic	Intergenic	-20638	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
60257	chr13	40594301	40594700	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	72141	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
2701	chr1	10641321	10641980	+	0	NA	intron (NM_001079843, intron 20 of 20)	intron (NM_001079843, intron 20 of 20)	154996	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
70053	chr14	100126771	100126930	+	0	NA	intron (NM_016337, intron 5 of 13)	intron (NM_016337, intron 5 of 13)	17195	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
89105	chr16	88490501	88490930	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	21797	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
154569	chr22	36258571	36260030	+	0	NA	intron (NM_145343, intron 5 of 6)	intron (NM_145343, intron 5 of 6)	6167	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
144681	chr20	36435651	36436900	+	0	NA	exon (NM_014902, exon 4 of 13)	exon (NM_014902, exon 4 of 13)	-25193	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
121792	chr19	47863351	47863900	+	0	NA	Intergenic	Intergenic	22690	NM_003167	6822		NM_003167	ENSG00000105398	SULT2A1	DHEA-ST|DHEA-ST8|DHEAS|HST|ST2|ST2A1|ST2A3|STD|SULT2A3|hSTa	sulfotransferase family 2A member 1	protein-coding
42315	chr11	68471071	68471380	+	0	NA	intron (NM_001352362, intron 2 of 24)	AluY|SINE|Alu	10473	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
34097	chr10	125788571	125788950	+	0	NA	non-coding (NR_136678, exon 7 of 7)	non-coding (NR_136678, exon 7 of 7)	-12939	NM_147191	118856		NM_147191	ENSG00000154485	MMP21	HTX7|MMP-21	matrix metallopeptidase 21	protein-coding
76351	chr15	74464351	74464650	+	0	NA	intron (NR_038448, intron 1 of 4)	MSTA|LTR|ERVL-MaLR	3235	NR_120377	440288		NR_038448	ENSG00000247240	UBL7-DT	UBL7-AS1	UBL7 divergent transcript	ncRNA
157831	chr22	47211871	47212880	+	0	NA	Intergenic	Intergenic	-133196	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
141001	chr2	238108921	238109180	+	0	NA	intron (NM_194312, intron 4 of 8)	intron (NM_194312, intron 4 of 8)	8710	NM_194312	339768		NM_194312	ENSG00000144488	ESPNL	-	espin like	protein-coding
68091	chr14	75289271	75289430	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5054	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
149949	chr21	36329201	36329900	+	0	NA	intron (NM_001320445, intron 1 of 15)	intron (NM_001320445, intron 1 of 15)	9353	NM_015358	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
187133	chr5	140432921	140433250	+	0	NA	intron (NM_020690, intron 1 of 35)	AluSz6|SINE|Alu	31252	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
236216	chrX	65697951	65698900	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	30771	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
4389	chr1	20789151	20790100	+	0	NA	Intergenic	AluSg|SINE|Alu	-2318	NM_001372052	50809		NM_016287	ENSG00000127483	HP1BP3	HP1-BP74|HP1BP74	heterochromatin protein 1 binding protein 3	protein-coding
11475	chr1	90706471	90706630	+	0	NA	Intergenic	CpG	10752	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
148210	chr20	63569621	63569950	+	0	NA	intron (NM_001037335, intron 4 of 19)	MIRc|SINE|MIR	-2031	NM_033405	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
103276	chr17	77778171	77778330	+	0	NA	Intergenic	MIRb|SINE|MIR	-49691	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
193342	chr6	30209801	30210780	+	0	NA	intron (NM_003449, intron 1 of 9).3	intron (NM_003449, intron 1 of 9).3	3116	NM_003449	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
11323	chr1	89450971	89451400	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	43506	NR_003133	400759		NR_003133	ENSG00000290525	GBP1P1	LIMIT	guanylate binding protein 1 pseudogene 1	pseudo
83941	chr16	29113021	29114150	+	0	NA	intron (NR_003369, intron 16 of 16)	MLT1C|LTR|ERVL-MaLR	38743	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
179155	chr4	169723351	169723450	+	0	NA	TTS (NM_001243374)	TTS (NM_001243374)	34544	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
151281	chr21	45482601	45483880	+	0	NA	intron (NM_001379500, intron 15 of 41)	intron (NM_001379500, intron 15 of 41)	4974	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
141280	chr2	240135951	240137350	+	0	NA	promoter-TSS (NM_001163424)	promoter-TSS (NM_001163424)	-303	NM_138336	150678		NM_138336	ENSG00000172428	COPS9	CSNAP|MYEOV2	COP9 signalosome subunit 9	protein-coding
232691	chr9	136530701	136531930	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	-11689	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
7022	chr1	31917821	31918080	+	0	NA	intron (NM_001369859, intron 3 of 6)	AluSc|SINE|Alu	19868	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
201407	chr6	145929071	145929300	+	0	NA	intron (NM_001370328, intron 16 of 31)	intron (NM_001370328, intron 16 of 31)	34912	NM_173082	257218		NM_173082	ENSG00000146414	SHPRH	RAD5|bA545I5.2	SNF2 histone linker PHD RING helicase	protein-coding
131409	chr2	96279421	96279830	+	0	NA	intron (NM_014014, intron 35 of 44)	intron (NM_014014, intron 35 of 44)	13400	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
74953	chr15	63803401	63803600	+	0	NA	intron (NM_003922, intron 1 of 77)	AluJr|SINE|Alu	30448	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
119103	chr19	39323751	39324650	+	0	NA	Intergenic	Intergenic	-3337	NM_020862	57622		NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
91663	chr17	5524971	5525830	+	0	NA	intron (NM_014922, intron 12 of 15)	intron (NM_014922, intron 12 of 15)	-24394	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
158211	chr22	50261001	50261880	+	0	NA	exon (NM_002969, exon 1 of 12)	exon (NM_002969, exon 1 of 12)	243	NM_002969	6300		NM_002969	ENSG00000188130	MAPK12	ERK-6|ERK3|ERK6|MAPK 12|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
118291	chr19	35332851	35333150	+	0	NA	intron (NM_001278417, intron 2 of 12)	intron (NM_001278417, intron 2 of 12)	3813	NM_001278417	933		NM_001771	ENSG00000012124	CD22	SIGLEC-2|SIGLEC2	CD22 molecule	protein-coding
30997	chr10	88193751	88194700	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	330600	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
178023	chr4	139451051	139451600	+	0	NA	TTS (NR_159964)	TTS (NR_159964)	2716	NR_159964	107984036		NR_159963		RAB33B-AS1	-	RAB33B antisense RNA 1	ncRNA
230947	chr9	129418351	129418450	+	0	NA	Intergenic	Intergenic	-70260	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
100949	chr17	64488601	64489550	+	0	NA	intron (NM_007215, intron 4 of 7)	AluYj4|SINE|Alu	7979	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
3041	chr1	12147971	12148580	+	0	NA	Intergenic	MIRc|SINE|MIR	-18668	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
137095	chr2	190946921	190947410	+	0	NA	intron (NM_014905, intron 14 of 17)	intron (NM_014905, intron 14 of 17)	66344	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
34129	chr10	128018851	128018950	+	0	NA	intron (NM_001323354, intron 1 of 19)	(CA)n|Simple_repeat|Simple_repeat	20753	NM_001323354	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
189486	chr5	173099951	173100050	+	0	NA	intron (NM_153607, intron 4 of 8)	AluSx1|SINE|Alu	43648	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
162071	chr3	46872451	46872750	+	0	NA	Intergenic	Intergenic	-5121	NM_000316	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
94416	chr17	29078971	29079330	+	0	NA	intron (NM_203318, intron 40 of 40)	intron (NM_203318, intron 40 of 40)	-3541	NM_004740	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
20349	chr1	197907451	197908030	+	0	NA	TTS (NM_001024594)	TTS (NM_001024594)	-4765	NM_001014434	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
177275	chr4	109447151	109447450	+	0	NA	intron (NM_001318085, intron 1 of 23)	intron (NM_001318085, intron 1 of 23)	-13483	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
91009	chr17	2790521	2790850	+	0	NA	intron (NM_001330058, intron 1 of 24)	intron (NM_001330058, intron 1 of 24)	-5753	NM_001100398	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
95001	chr17	32362271	32362630	+	0	NA	intron (NM_001098507, intron 6 of 11)	AluJr|SINE|Alu	12293	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
176960	chr4	103105921	103106180	+	0	NA	3' UTR (NM_001813, exon 49 of 49)	3' UTR (NM_001813, exon 49 of 49)	-6216	NM_020139	56898		NM_020139	ENSG00000164039	BDH2	DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308	3-hydroxybutyrate dehydrogenase 2	protein-coding
96732	chr17	41676271	41677030	+	0	NA	Intergenic	MER21C|LTR|ERVL	-12235	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
155372	chr22	38295871	38296130	+	0	NA	intron (NM_152221, intron 7 of 10)	MIRb|SINE|MIR	21433	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
178329	chr4	145731471	145731830	+	0	NA	intron (NM_001080531, intron 5 of 5)	AluSq2|SINE|Alu	51504	NM_001080531	646603		NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
93553	chr17	19070071	19071280	+	0	NA	Intergenic	CpG	-6539	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
193193	chr6	29740621	29741130	+	0	NA	intron (NR_026972, intron 2 of 5).3	intron (NR_026972, intron 2 of 5).3	8174	NR_026972	285830		NM_001003807	ENSG00000214922	HLA-F-AS1	-	HLA-F antisense RNA 1	ncRNA
149588	chr21	33265551	33267480	+	0	NA	promoter-TSS (NR_038974)	promoter-TSS (NR_038974)	148	NM_000628	3588		NM_000628	ENSG00000243646	IL10RB	CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IBD25|IL-10R2|IL-10RB	interleukin 10 receptor subunit beta	protein-coding
222432	chr8	134720121	134721050	+	0	NA	Intergenic	Intergenic	-7554	NM_001289394	57623		NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
208431	chr7	66817671	66818230	+	0	NA	intron (NR_003934, intron 9 of 10)	AluJo|SINE|Alu	26876	NR_003934	729156		NR_003934	ENSG00000291206	GTF2IRD1P1	-	GTF2I repeat domain containing 1 pseudogene 1	pseudo
52634	chr12	56276021	56276280	+	0	NA	exon (NM_004077, exon 7 of 11)	exon (NM_004077, exon 7 of 11)	8824	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
235706	chrX	48890621	48892180	+	0	NA	Intergenic	CpG	-6512	NM_001032383	10084		NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
171244	chr3	195788221	195788950	+	0	NA	exon (NM_001322468, exon 3 of 42)	exon (NM_001322468, exon 3 of 42)	23344	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
210208	chr7	99140121	99140580	+	0	NA	intron (NM_181349, intron 1 of 17)	AluY|SINE|Alu	3758	NM_181349	57154		NM_020429	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
227846	chr9	93501151	93502080	+	0	NA	intron (NM_001286722, intron 5 of 17)	intron (NM_001286722, intron 5 of 17)	-48014	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
133450	chr2	119676551	119677050	+	0	NA	Intergenic	L1MB5|LINE|L1	-2367	NM_001105198	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
86785	chr16	67803571	67804350	+	0	NA	intron (NM_001320238, intron 1 of 12)	intron (NM_001320238, intron 1 of 12)	2600	NM_020850	57610		NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
168727	chr3	150758151	150758780	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	4704	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
102945	chr17	76678101	76679250	+	0	NA	TTS (NM_198530)	TTS (NM_198530)	6747	NR_130916	105274304		NR_130916	ENSG00000261335	LOC105274304	-	uncharacterized LOC105274304	ncRNA
184769	chr5	110104801	110105000	+	0	NA	Intergenic	Intergenic	221718	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
211391	chr7	105024251	105024350	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	10095	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
31800	chr10	98408751	98409400	+	0	NA	intron (NM_032709, intron 2 of 15)	MER90a|LTR|ERV1	6107	NM_032709	84795		NM_032709	ENSG00000119943	PYROXD2	C10orf33|FP3420|YUEF	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding
24412	chr1	243343921	243344280	+	0	NA	intron (NM_001350251, intron 14 of 20).2	intron (NM_001350251, intron 14 of 20).2	-2076	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
46597	chr11	128527121	128527850	+	0	NA	intron (NR_120581, intron 2 of 3)	intron (NR_120581, intron 2 of 3)	1343	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
76896	chr15	77990301	77991300	+	0	NA	Intergenic	MIRb|SINE|MIR	3425	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
10574	chr1	67314451	67314830	+	0	NA	intron (NM_001319233, intron 2 of 15)	intron (NM_001319233, intron 2 of 15)	6767	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
202195	chr6	156396221	156397350	+	0	NA	Intergenic	Intergenic	18035	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
187716	chr5	143391921	143392180	+	0	NA	intron (NR_157096, intron 1 of 7)	AluY|SINE|Alu	11233	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
229458	chr9	121701921	121702180	+	0	NA	intron (NM_032552, intron 3 of 16)	intron (NM_032552, intron 3 of 16)	-40735	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
80529	chr16	2765301	2766080	+	0	NA	exon (NM_016333, exon 11 of 15)	exon (NM_016333, exon 11 of 15)	11590	NM_207013	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
182337	chr5	59125901	59126480	+	0	NA	intron (NM_001364603, intron 5 of 15)	A-rich|Low_complexity|Low_complexity	-86714	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
153059	chr22	23286171	23286730	+	0	NA	intron (NM_021574, intron 10 of 21)	intron (NM_021574, intron 10 of 21)	23683	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
191720	chr6	13686951	13687330	+	0	NA	intron (NM_005493, intron 2 of 13)	L2b|LINE|L2	24695	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
37912	chr11	34104751	34106330	+	0	NA	promoter-TSS (NM_024662)	promoter-TSS (NM_024662)	-89	NM_001144030	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
26736	chr10	22687171	22687530	+	0	NA	intron (NM_005028, intron 1 of 9)	L1MA9|LINE|L1	26758	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
136386	chr2	176125601	176125800	+	0	NA	TTS (NM_014213)	TTS (NM_014213)	2981	NM_014213	3235		NM_014213	ENSG00000128709	HOXD9	HOX4|HOX4C|Hox-4.3|Hox-5.2	homeobox D9	protein-coding
200924	chr6	139149571	139149730	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	14570	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
213877	chr7	142384201	142384900	+	0	NA	Intergenic	Intergenic	-89977	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
31461	chr10	96306621	96306880	+	0	NA	intron (NM_001017520, intron 1 of 10)	intron (NM_001017520, intron 1 of 10)	2316	NM_001017520	1791		NM_004088	ENSG00000107447	DNTT	TDT	DNA nucleotidylexotransferase	protein-coding
35469	chr11	1471571	1471930	+	0	NA	intron (NM_053005, intron 2 of 3)	intron (NM_053005, intron 2 of 3)	9136	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
196532	chr6	43923851	43925030	+	0	NA	intron (NR_024478, intron 1 of 1)	MamRTE1|LINE|RTE-BovB	33412	NR_024478	100132354		NR_024478	ENSG00000289313	LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
161629	chr3	43292301	43293030	+	0	NA	intron (NM_001330750, intron 1 of 4)	intron (NM_001330750, intron 1 of 4)	6125	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
117568	chr19	21335951	21336050	+	0	NA	Intergenic	LTR10E|LTR|ERV1	-6561	NM_001297560	7562		NM_021269	ENSG00000182141	ZNF708	KOX8|ZNF15|ZNF15L1	zinc finger protein 708	protein-coding
130222	chr2	84741201	84741750	+	0	NA	intron (NM_001370, intron 62 of 76)	L1M2a1|LINE|L1	139609	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
216819	chr8	22572021	22573000	+	0	NA	intron (NM_005775, intron 20 of 20)	intron (NM_005775, intron 20 of 20)	-6231	NM_021630	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
100588	chr17	63433021	63433580	+	0	NA	3' UTR (NM_001915, exon 6 of 6)	3' UTR (NM_001915, exon 6 of 6)	6967	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
148037	chr20	63182371	63182530	+	0	NA	Intergenic	Intergenic	3950	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
45174	chr11	117229871	117231080	+	0	NA	intron (NM_004716, intron 1 of 16)	intron (NM_004716, intron 1 of 16)	1598	NM_004716	9159		NM_004716	ENSG00000160613	PCSK7	LPC|PC7|PC8|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding
51436	chr12	52032401	52033930	+	0	NA	intron (NM_001202233, intron 1 of 7)	CpG	-4550	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
197120	chr6	57324571	57324880	+	0	NA	intron (NM_000947, intron 4 of 13)	intron (NM_000947, intron 4 of 13)	7095	NM_000947	5558		NM_000947	ENSG00000146143	PRIM2	PRIM2A|p58	DNA primase subunit 2	protein-coding
127227	chr2	38625201	38625600	+	0	NA	Intergenic	Intergenic	-22364	NM_001142650	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
61437	chr13	51846071	51846230	+	0	NA	promoter-TSS (NM_001351005)	promoter-TSS (NM_001351005)	-973	NM_001351006	283521		NM_178515	ENSG00000281106	TMEM272	LINC00282|NCRNA00282	transmembrane protein 272	protein-coding
31260	chr10	92101571	92101930	+	0	NA	intron (NM_014912, intron 7 of 9)	AluSz|SINE|Alu	141529	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
2338	chr1	9222971	9223130	+	0	NA	Intergenic	MER74A|LTR|ERVL	-11724	NM_004285	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
171371	chr3	196079871	196080400	+	0	NA	intron (NM_001313966, intron 1 of 16)	AluSz|SINE|Alu	1955	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
209131	chr7	75075551	75076050	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-1919	NM_001281441	81554		NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
181116	chr5	37248851	37249830	+	0	NA	promoter-TSS (NM_023073)	promoter-TSS (NM_023073)	36	NM_001384732	65250		NM_023073	ENSG00000197603	CPLANE1	C5orf42|Hug|JBTS17|OFD6	ciliogenesis and planar polarity effector complex subunit 1	protein-coding
71543	chr14	106224151	106224750	+	0	NA	Intergenic	Intergenic	-63224	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
226473	chr9	71744471	71744930	+	0	NA	intron (NM_001135820, intron 4 of 22)	intron (NM_001135820, intron 4 of 22)	23813	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
127343	chr2	39117771	39117930	+	0	NA	intron (NM_001382394, intron 1 of 22)	intron (NM_001382394, intron 1 of 22)	3201	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
45714	chr11	119087651	119088380	+	0	NA	promoter-TSS (NM_001024382)	promoter-TSS (NM_001024382)	28	NM_001024382	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
173897	chr4	24585851	24585950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1346	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
31295	chr10	92590321	92590780	+	0	NA	Intergenic	L2a|LINE|L2	-2580	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
210022	chr7	93992771	93992930	+	0	NA	TTS (NM_005868)	TTS (NM_005868)	11505	NR_133909	10282		NM_005868	ENSG00000105829	BET1	HBET1|MDRP	Bet1 golgi vesicular membrane trafficking protein	protein-coding
203575	chr7	912221	913180	+	0	NA	intron (NM_006869, intron 4 of 10)	intron (NM_006869, intron 4 of 10)	8189	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
45675	chr11	119037401	119037800	+	0	NA	Intergenic	AluY|SINE|Alu	-6694	NM_001164277	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
223484	chr8	144057721	144058180	+	0	NA	promoter-TSS (NR_106905)	promoter-TSS (NR_106905)	-570	NR_106905	102465509		NR_106905	ENSG00000277888	MIR6846	hsa-mir-6846	microRNA 6846	ncRNA
188186	chr5	150623101	150623500	+	0	NA	intron (NM_001166209, intron 2 of 2)	intron (NM_001166209, intron 2 of 2)	5656	NM_001166209	11346		NM_007286	ENSG00000171992	SYNPO	SYNPO1	synaptopodin	protein-coding
136515	chr2	177246351	177246930	+	0	NA	intron (NM_001313902, intron 1 of 3)	AluJr|SINE|Alu	9370	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
142637	chr20	5714221	5715400	+	0	NA	Intergenic	Intergenic	-35577	NM_001303478	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
38583	chr11	46210201	46210600	+	0	NA	Intergenic	Intergenic	38445	NR_120565	101928894		NR_120565	ENSG00000255314	LOC101928894	-	uncharacterized LOC101928894	ncRNA
168671	chr3	150548201	150548430	+	0	NA	intron (NM_001319043, intron 1 of 12)	L2c|LINE|L2	1528	NM_032025	83939		NM_032025	ENSG00000144895	EIF2A	CDA02|EIF-2A|MST089|MSTP004|MSTP089	eukaryotic translation initiation factor 2A	protein-coding
6536	chr1	28578051	28578430	+	0	NA	TTS (NR_003077)	TTS (NR_003077)	582	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	small nucleolar RNA, C/D box 99	snoRNA
159522	chr3	14424221	14425050	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	22029	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
2940	chr1	11845651	11846050	+	0	NA	3' UTR (NM_006172, exon 3 of 3)	3' UTR (NM_006172, exon 3 of 3)	1933	NM_006172	4878		NM_006172	ENSG00000175206	NPPA	ANF|ANP|ATFB6|ATRST2|CDD|CDD-ANF|CDP|PND	natriuretic peptide A	protein-coding
156068	chr22	40006971	40007400	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	12231	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
143554	chr20	31604001	31604600	+	0	NA	promoter-TSS (NM_002165)	promoter-TSS (NM_002165)	-989	NM_002165	3397		NM_002165	ENSG00000125968	ID1	ID|bHLHb24	inhibitor of DNA binding 1	protein-coding
192573	chr6	25788551	25788850	+	0	NA	intron (NM_005074, intron 12 of 12)	intron (NM_005074, intron 12 of 12)	33958	NM_005495	10050		NM_005495	ENSG00000146039	SLC17A4	KAIA2138	solute carrier family 17 member 4	protein-coding
106814	chr18	23988171	23988730	+	0	NA	Intergenic	L1ME1|LINE|L1	-4437	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
233874	chrX	1558871	1559230	+	0	NA	Intergenic	Intergenic	-21865	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
173436	chr4	8224321	8225680	+	0	NA	intron (NM_001318480, intron 10 of 17)	intron (NM_001318480, intron 10 of 17)	25710	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
24515	chr1	244729451	244729780	+	0	NA	Intergenic	MIRc|SINE|MIR	76489	NM_001297746	51029		NM_016076	ENSG00000121644	DESI2	C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
217295	chr8	27372721	27373180	+	0	NA	intron (NM_173174, intron 6 of 35)	MER102b|DNA|hAT-Charlie	47386	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
186238	chr5	134403701	134403900	+	0	NA	intron (NM_080656, intron 2 of 2)	AluSg4|SINE|Alu	8081	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
110929	chr19	2789251	2789700	+	0	NA	intron (NM_003249, intron 1 of 12)	intron (NM_003249, intron 1 of 12)	3972	NM_003249	7064		NM_003249	ENSG00000172009	THOP1	EP24.15|MEPD_HUMAN|MP78|TOP	thimet oligopeptidase 1	protein-coding
203462	chr7	466151	466680	+	0	NA	Intergenic	Intergenic	-34614	NR_165236	112267991		NR_165236		LOC112267991	-	uncharacterized LOC112267991	ncRNA
150636	chr21	43396701	43397930	+	0	NA	Intergenic	Intergenic	29816	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
227024	chr9	83924171	83924330	+	0	NA	Intergenic	Intergenic	-2706	NM_001271928	55582		NM_017576	ENSG00000165115	KIF27	-	kinesin family member 27	protein-coding
37842	chr11	33630251	33630350	+	0	NA	intron (NM_012194, intron 16 of 20)	L1PA3|LINE|L1	70440	NM_001166692	100131378		NM_001166692	ENSG00000205177	C11orf91	-	chromosome 11 open reading frame 91	protein-coding
70761	chr14	103424921	103425180	+	0	NA	intron (NM_002376, intron 2 of 15)	AluSc8|SINE|Alu	39635	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
130008	chr2	74169421	74169680	+	0	NA	intron (NM_001317110, intron 2 of 5)	Charlie1b|DNA|hAT-Charlie	8764	NM_001317111	55233		NM_018221	ENSG00000114978	MOB1A	C2orf6|MABKL1B|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B	MOB kinase activator 1A	protein-coding
52135	chr12	54210221	54211450	+	0	NA	Intergenic	Intergenic	20641	NR_039851	100616400		NR_039851	ENSG00000283803	MIR3198-2	mir-3198-2	microRNA 3198-2	ncRNA
228158	chr9	96938771	96939250	+	0	NA	exon (NM_001170741, exon 7 of 7)	exon (NM_001170741, exon 7 of 7)	10167	NM_001045477	441457		NM_001024597	ENSG00000188152	NUTM2G	FAM22G|NUTMG	NUT family member 2G	protein-coding
51103	chr12	50041471	50041630	+	0	NA	Intergenic	Intergenic	-15993	NM_001320004	29127		NM_013277	ENSG00000161800	RACGAP1	CDAN3B|CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
236883	chrX	82141801	82142200	+	0	NA	Intergenic	Intergenic	939898	NM_003022	6451		NM_003022	ENSG00000131171	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate rich protein like	protein-coding
224676	chr9	21141251	21141800	+	0	NA	exon (NM_002177, exon 1 of 1)	exon (NM_002177, exon 1 of 1)	376	NM_002177	3467		NM_002177	ENSG00000177047	IFNW1	-	interferon omega 1	protein-coding
61955	chr13	79384051	79384350	+	0	NA	intron (NM_022118, intron 1 of 20)	intron (NM_022118, intron 1 of 20)	22021	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
6704	chr1	29184371	29184730	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2650	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
176254	chr4	86974401	86975000	+	0	NA	intron (NM_001166693, intron 2 of 20)	intron (NM_001166693, intron 2 of 20)	-32288	NM_001313959	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
124170	chr19	56115971	56117000	+	0	NA	intron (NM_001351682, intron 1 of 1)	AluJo|SINE|Alu	4810	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
151533	chr21	46472301	46472750	+	0	NA	intron (NM_206891, intron 1 of 19)	intron (NM_206891, intron 1 of 19)	10054	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
194277	chr6	32637051	32637830	+	0	NA	promoter-TSS (NM_002122)	promoter-TSS (NM_002122)	34	NM_002122	3117		NM_002122	ENSG00000196735	HLA-DQA1	CELIAC1|DQ-A1|DQA1|HLA-DQA|HLA-DQA1*|HLA-DQB1	major histocompatibility complex, class II, DQ alpha 1	protein-coding
107435	chr18	46213151	46213650	+	0	NA	intron (NM_145055, intron 1 of 4)	intron (NM_145055, intron 1 of 4)	39366	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
23303	chr1	228071001	228071450	+	0	NA	Intergenic	Intergenic	5325	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
122147	chr19	48868971	48869800	+	0	NA	promoter-TSS (NM_001161354)	promoter-TSS (NM_001161354)	-768	NM_001161354	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
206830	chr7	37315451	37315550	+	0	NA	intron (NM_014800, intron 3 of 21)	intron (NM_014800, intron 3 of 21)	38168	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
192240	chr6	20023601	20024400	+	0	NA	Intergenic	LTR12_|LTR|ERV1	186630	NM_001546	3400		NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4	protein-coding
227942	chr9	94415351	94415450	+	0	NA	intron (NM_032558, intron 2 of 11)	intron (NM_032558, intron 2 of 11)	40831	NM_032558	84641		NM_032558	ENSG00000148110	MFSD14B	HIATL1	major facilitator superfamily domain containing 14B	protein-coding
42488	chr11	69972421	69972680	+	0	NA	Intergenic	Intergenic	-13357	NM_001378092	55107		NM_018043	ENSG00000131620	ANO1	DOG1|INDMS|MYMY7|ORAOV2|TAOS2|TMEM16A	anoctamin 1	protein-coding
181733	chr5	50691221	50691950	+	0	NA	intron (NM_024615, intron 2 of 25)	L2c|LINE|L2	24171	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
21855	chr1	207458721	207459380	+	0	NA	intron (NM_001877, intron 1 of 18)	MER65A|LTR|ERV1	4722	NM_001006658	1380		NM_001877	ENSG00000117322	CR2	C3DR|CD21|CR|CVID7|SLEB9	complement C3d receptor 2	protein-coding
64442	chr14	24212601	24214000	+	0	NA	TTS (NM_001199822)	TTS (NM_001199822)	188	NM_014169	29082		NM_014169	ENSG00000254505	CHMP4A	C14orf123|CHMP4|CHMP4B|HSPC134|SHAX2|SNF7|SNF7-1|VPS32-1|VPS32A|hSnf7-1	charged multivesicular body protein 4A	protein-coding
156096	chr22	40068371	40068530	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSx|SINE|Alu	23633	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
116016	chr19	17128201	17128550	+	0	NA	intron (NM_004145, intron 2 of 39)	AluJo|SINE|Alu	36140	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
78628	chr15	94241971	94242330	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	10589	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
112925	chr19	7674251	7675100	+	0	NA	Intergenic	Intergenic	-2382	NM_174918	199675		NM_174918	ENSG00000183019	MCEMP1	C19orf59	mast cell expressed membrane protein 1	protein-coding
189722	chr5	176534941	176535780	+	0	NA	intron (NM_014901, intron 1 of 10)	intron (NM_014901, intron 1 of 10)	2042	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
168358	chr3	141890551	141891250	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	14257	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
33130	chr10	112369201	112370100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4466	NM_203379	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
45222	chr11	117907101	117907930	+	0	NA	TTS (NM_001206790)	TTS (NM_001206790)	21887	NM_001206789	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
238091	chrX	136542221	136542550	+	0	NA	intron (NM_016267, intron 2 of 4)	intron (NM_016267, intron 2 of 4)	-8493	NR_030631	100126324		NR_030631	ENSG00000216060	MIR934	MIRN934|hsa-mir-934|mir-934	microRNA 934	ncRNA
144064	chr20	33675621	33676500	+	0	NA	3' UTR (NM_005225, exon 7 of 7)	3' UTR (NM_005225, exon 7 of 7)	-1632	NM_031232	63941		NM_031231	ENSG00000125967	NECAB3	APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5	N-terminal EF-hand calcium binding protein 3	protein-coding
150114	chr21	37459501	37459880	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	39391	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
110194	chr19	1682771	1682930	+	0	NA	Intergenic	Intergenic	-30235	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
167993	chr3	136746821	136748030	+	0	NA	intron (NM_005862, intron 1 of 33)	AluJb|SINE|Alu	4953	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
183012	chr5	72849851	72849950	+	0	NA	intron (NM_002270, intron 2 of 24)	intron (NM_002270, intron 2 of 24)	1761	NM_001364293	3842		NM_002270	ENSG00000083312	TNPO1	IPO2|KPNB2|MIP|MIP1|TRN	transportin 1	protein-coding
172623	chr4	2519651	2520230	+	0	NA	Intergenic	Intergenic	-15435	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
3850	chr1	16921521	16922930	+	0	NA	intron (NM_014675, intron 1 of 36)	intron (NM_014675, intron 1 of 36)	294	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
17180	chr1	156230971	156231330	+	0	NA	intron (NM_001199654, intron 2 of 4)	AluY|SINE|Alu	-11034	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
157385	chr22	44729351	44730680	+	0	NA	intron (NM_181334, intron 4 of 14)	intron (NM_181334, intron 4 of 14)	-22543	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
127049	chr2	37233151	37233450	+	0	NA	intron (NR_146404, intron 2 of 8)	L2|LINE|L2	1642	NR_146404	55471		NM_018607	ENSG00000003509	NDUFAF7	C2orf56|MidA|PRO1853	NADH:ubiquinone oxidoreductase complex assembly factor 7	protein-coding
171908	chr4	830051	830750	+	0	NA	Intergenic	Intergenic	-4271	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
210944	chr7	101289921	101291000	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-9153	NR_146480	101927721		NR_146480	ENSG00000232301	LNCPRESS1	-	lncRNA p53 regulated and ESC associated 1	ncRNA
83118	chr16	22518271	22518430	+	0	NA	intron (NM_001135865, intron 1 of 6)	MER113|DNA|hAT-Charlie	4827	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
29483	chr10	70573151	70573450	+	0	NA	Intergenic	Intergenic	29441	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
181634	chr5	49599501	49600700	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	841188	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
50256	chr12	46257571	46259150	+	0	NA	intron (NM_001278387, intron 1 of 17)	Tigger4b|DNA|TcMar-Tigger	8156	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
11572	chr1	91522001	91522200	+	0	NA	intron (NM_001134420, intron 11 of 11)	AluSc|SINE|Alu	20992	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
60319	chr13	40658201	40658400	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	8341	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
237738	chrX	129360271	129360430	+	0	NA	Intergenic	LTR55|LTR|ERVL?	163140	NM_003069	6594		NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
196911	chr6	52375321	52375580	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	13299	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
118403	chr19	35749971	35750430	+	0	NA	intron (NM_001369780, intron 1 of 8)	intron (NM_001369780, intron 1 of 8)	1386	NM_001369780	55957		NM_019104	ENSG00000267796	LIN37	F25965|ZK418.4|lin-37	lin-37 DREAM MuvB core complex component	protein-coding
12176	chr1	100361301	100362300	+	0	NA	intron (NM_001319210, intron 2 of 16)	intron (NM_001319210, intron 2 of 16)	9294	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
115488	chr19	15373551	15375300	+	0	NA	intron (NM_005858, intron 3 of 13)	intron (NM_005858, intron 3 of 13)	5362	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
184381	chr5	98796251	98796630	+	0	NA	TTS (NM_001366511)	TTS (NM_001366511)	22777	NM_001366508	285704		NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule BMP co-receptor b	protein-coding
48655	chr12	10429571	10429930	+	0	NA	TTS (NM_002260)	TTS (NM_002260)	6243	NM_002260	3822		NM_002260	ENSG00000205809	KLRC2	CD159c|NKG2-C|NKG2C	killer cell lectin like receptor C2	protein-coding
175913	chr4	80195701	80195900	+	0	NA	intron (NM_020226, intron 3 of 9)	intron (NM_020226, intron 3 of 9)	-1703	NM_001099403	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
171658	chr3	197663071	197663580	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	11251	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
83811	chr16	28831351	28831650	+	0	NA	intron (NM_148416, intron 10 of 22)	AluSx3|SINE|Alu	8452	NM_007245	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
220641	chr8	100966851	100967150	+	0	NA	Intergenic	AluSz|SINE|Alu	-13618	NM_003406	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
84661	chr16	30745001	30745850	+	0	NA	TTS (NM_001256829)	TTS (NM_001256829)	-2874	NM_001172432	5261		NM_000294	ENSG00000156873	PHKG2	GSD9C	phosphorylase kinase catalytic subunit gamma 2	protein-coding
178455	chr4	148059621	148060000	+	0	NA	intron (NM_024605, intron 20 of 22)	LTR40a|LTR|ERVL	277215	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
127192	chr2	38532701	38532900	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-17060	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
172724	chr4	2810801	2811050	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	-1366	NM_001145855	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
89604	chr16	89294351	89295050	+	0	NA	intron (NR_045839, intron 5 of 9)	intron (NR_045839, intron 5 of 9)	-1428	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
7171	chr1	32255271	32256030	+	0	NA	intron (NM_005356, intron 1 of 12)	intron (NM_005356, intron 1 of 12)	4385	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
58613	chr12	132487921	132488200	+	0	NA	Intergenic	AluSx|SINE|Alu	-2091	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
155695	chr22	39083271	39084130	+	0	NA	TTS (NM_001349438)	TTS (NM_001349438)	6425	NM_001349438	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
115615	chr19	16075821	16077780	+	0	NA	promoter-TSS (NM_001367838)	promoter-TSS (NM_001367838)	-216	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
175282	chr4	67541071	67541230	+	0	NA	intron (NR_155754, intron 2 of 18)	intron (NR_155754, intron 2 of 18)	4353	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
5118	chr1	24876251	24877200	+	0	NA	Intergenic	MIRc|SINE|MIR	42691	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
222997	chr8	143270101	143270430	+	0	NA	intron (NM_138465, intron 2 of 3)	intron (NM_138465, intron 2 of 3)	2820	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
43447	chr11	77818951	77820100	+	0	NA	intron (NM_016578, intron 1 of 15)	intron (NM_016578, intron 1 of 15)	1309	NM_016578	51773		NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
32684	chr10	103947651	103947950	+	0	NA	Intergenic	Intergenic	-19340	NM_001304743	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
229981	chr9	126805631	126806580	+	0	NA	intron (NM_001135776, intron 1 of 1)	intron (NM_001135776, intron 1 of 1)	1065	NM_014007	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
27788	chr10	35460821	35461080	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	124076	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
92057	chr17	7505701	7506230	+	0	NA	intron (NM_000937, intron 19 of 29)	AluSp|SINE|Alu	21599	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
224649	chr9	20658191	20659280	+	0	NA	5' UTR (NM_017794, exon 2 of 46)	5' UTR (NM_017794, exon 2 of 46)	426	NM_017794	54914		NM_017794	ENSG00000188352	FOCAD	KIAA1797|SCOLIV	focadhesin	protein-coding
50776	chr12	49035621	49036280	+	0	NA	intron (NM_003482, intron 35 of 54)	MIR|SINE|MIR	-17174	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
51078	chr12	49953221	49953650	+	0	NA	intron (NR_110591, intron 1 of 2)	intron (NR_110591, intron 1 of 2)	2698	NM_000486	359		NM_000486	ENSG00000167580	AQP2	AQP-CD|NDI2|WCH-CD	aquaporin 2	protein-coding
232538	chr9	136339971	136340680	+	0	NA	intron (NM_015597, intron 8 of 8)	intron (NM_015597, intron 8 of 8)	-12732	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
40907	chr11	65180451	65183200	+	0	NA	promoter-TSS (NM_005186)	promoter-TSS (NM_005186)	9	NR_145677	728975		NR_145677	ENSG00000254614	CAPN1-AS1	-	CAPN1 antisense RNA 1	ncRNA
184887	chr5	112705901	112706300	+	0	NA	Intergenic	L2c|LINE|L2	-1398	NM_001354895	324		NM_000038	ENSG00000134982	APC	BTPS2|DESMD|DP2|DP2.5|DP3|GS|PPP1R46	APC regulator of WNT signaling pathway	protein-coding
35963	chr11	2812571	2812930	+	0	NA	intron (NM_181798, intron 15 of 15)	L2b|LINE|L2	48819	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
154706	chr22	36411301	36411780	+	0	NA	Intergenic	AluJb|SINE|Alu	-23573	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
48214	chr12	8108751	8109230	+	0	NA	Intergenic	Intergenic	-14642	NM_016184	50856		NM_016184	ENSG00000111729	CLEC4A	CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR|hDCIR	C-type lectin domain family 4 member A	protein-coding
205734	chr7	23494771	23495380	+	0	NA	Intergenic	AluSx|SINE|Alu	4687	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
130464	chr2	85542521	85543250	+	0	NA	intron (NM_005911, intron 7 of 8)	intron (NM_005911, intron 7 of 8)	3717	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
234372	chrX	15759301	15759500	+	0	NA	intron (NR_160544, intron 5 of 11)	MLT1A0|LTR|ERVL-MaLR	21130	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
106200	chr18	11619021	11619100	+	0	NA	Intergenic	AluJb|SINE|Alu	9502	NM_001282300	646000		NM_001282300	ENSG00000236396	SLC35G4	AMAC1L1|SLC35G4P	solute carrier family 35 member G4	protein-coding
156404	chr22	41175721	41176400	+	0	NA	intron (NM_001362843, intron 28 of 29)	AluJb|SINE|Alu	21441	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
100872	chr17	64322571	64323130	+	0	NA	3' UTR (NM_000442, exon 16 of 16)	3' UTR (NM_000442, exon 16 of 16)	-59590	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
219684	chr8	80565821	80566150	+	0	NA	Intergenic	Intergenic	79759	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
60117	chr13	38417871	38418030	+	0	NA	Intergenic	L1MC1|LINE|L1	68099	NM_016617	51569		NM_016617	ENSG00000120686	UFM1	BM-002|C13orf20|HLD14	ubiquitin fold modifier 1	protein-coding
113229	chr19	8479571	8480100	+	0	NA	intron (NM_031203, intron 13 of 16)	AluSg7|SINE|Alu	22805	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
63002	chr13	112526201	112526750	+	0	NA	intron (NM_001286278, intron 13 of 20)	(ATC)n|Simple_repeat|Simple_repeat	61678	NM_006322	10426		NM_006322	ENSG00000126216	TUBGCP3	104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex component 3	protein-coding
180389	chr5	9361901	9362300	+	0	NA	intron (NM_003966, intron 3 of 22)	intron (NM_003966, intron 3 of 22)	-149233	NR_109935	101929338		NR_109935	ENSG00000251370	SEMA5A-AS1	CTD-2201E9.1	SEMA5A antisense RNA 1	ncRNA
3380	chr1	15696771	15698150	+	0	NA	intron (NM_015164, intron 1 of 19)	intron (NM_015164, intron 1 of 19)	13140	NM_015164	23207		NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology and RUN domain containing M2	protein-coding
177524	chr4	118591301	118594450	+	0	NA	intron (NR_109983, intron 1 of 9)	AluJo|SINE|Alu	1131	NR_109983	729218		NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
217413	chr8	28376551	28376650	+	0	NA	intron (NM_018660, intron 1 of 9)	AluSx1|SINE|Alu	9860	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
126557	chr2	28619851	28620550	+	0	NA	intron (NM_153021, intron 46 of 57)	intron (NM_153021, intron 46 of 57)	53843	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
80200	chr16	2147951	2149200	+	0	NA	promoter-TSS (NM_014353)	promoter-TSS (NM_014353)	-50	NM_014353	25837		NM_014353	ENSG00000167964	RAB26	V46133	RAB26, member RAS oncogene family	protein-coding
44007	chr11	94741001	94741450	+	0	NA	promoter-TSS (NR_135093)	promoter-TSS (NR_135093)	-870	NR_135093	105369438		NR_135093	ENSG00000255929	PIWIL4-AS1	-	PIWIL4 antisense RNA 1	ncRNA
84879	chr16	31185001	31185530	+	0	NA	intron (NR_028388, intron 6 of 13)	intron (NR_028388, intron 6 of 13)	5126	NM_004960	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
205633	chr7	22564771	22565380	+	0	NA	non-coding (NR_038393, exon 2 of 4)	non-coding (NR_038393, exon 2 of 4)	1738	NR_038393	100506178		NR_038393	ENSG00000232759	STEAP1B-AS1	-	STEAP1B antisense RNA 1	ncRNA
14824	chr1	146303871	146305030	+	0	NA	Intergenic	L1PA16|LINE|L1	6459	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
85846	chr16	57014371	57015330	+	0	NA	intron (NR_169520, intron 1 of 47)	MLT1A0|LTR|ERVL-MaLR	25293	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
31486	chr10	96589021	96589580	+	0	NA	Intergenic	Intergenic	-2288	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
216669	chr8	22144971	22146030	+	0	NA	Intergenic	Intergenic	-3593	NM_001316965	80346		NM_025232	ENSG00000168476	REEP4	C8orf20|PP432|Yip2c	receptor accessory protein 4	protein-coding
19420	chr1	174190501	174190700	+	0	NA	intron (NM_001366447, intron 1 of 20)	Tigger1|DNA|TcMar-Tigger	31080	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
149872	chr21	35503671	35504030	+	0	NA	intron (NR_073512, intron 1 of 2)	intron (NR_073512, intron 1 of 2)	76914	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
125248	chr2	10409001	10409830	+	0	NA	intron (NM_134421, intron 3 of 5)	intron (NM_134421, intron 3 of 5)	37434	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
139261	chr2	219443901	219444250	+	0	NA	intron (NM_005876, intron 1 of 40)	intron (NM_005876, intron 1 of 40)	9232	NM_005876	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
88511	chr16	85311071	85311900	+	0	NA	Intergenic	Intergenic	-5160	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
27123	chr10	27958471	27958700	+	0	NA	intron (NM_018076, intron 10 of 19)	L4_A_Mam|LINE|RTE-X	23286	NM_001290021	55130		NM_018076	ENSG00000169126	ODAD2	ARMC4|CILD23|gudu	outer dynein arm docking complex subunit 2	protein-coding
78446	chr15	92831151	92832280	+	0	NA	Intergenic	Intergenic	36231	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
93314	chr17	18175971	18176280	+	0	NA	intron (NM_016239, intron 64 of 64)	L2a|LINE|L2	-7703	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
219783	chr8	81140751	81141050	+	0	NA	Intergenic	Intergenic	-28832	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
54563	chr12	92234371	92234930	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	88565	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
106081	chr18	9123971	9124580	+	0	NA	intron (NM_021074, intron 5 of 7)	AluJr4|SINE|Alu	12445	NR_110771	101927275		NR_110771	ENSG00000266053	NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
216580	chr8	21984651	21984830	+	0	NA	exon (NM_001100161, exon 12 of 28)	exon (NM_001100161, exon 12 of 28)	-39394	NM_001286680	10361		NM_182795	ENSG00000158806	NPM2	-	nucleophosmin/nucleoplasmin 2	protein-coding
1976	chr1	6597921	6598180	+	0	NA	intron (NM_014851, intron 2 of 3)	intron (NM_014851, intron 2 of 3)	4819	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
40336	chr11	63920651	63920750	+	0	NA	Intergenic	Intergenic	-3536	NM_173587	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
67192	chr14	68879121	68879380	+	0	NA	intron (NM_001130004, intron 18 of 21)	intron (NM_001130004, intron 18 of 21)	-83007	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
133826	chr2	127874621	127875350	+	0	NA	intron (NM_031445, intron 2 of 7)	intron (NM_031445, intron 2 of 7)	9875	NM_031445	83607		NM_031445	ENSG00000144233	AMMECR1L	-	AMMECR1 like	protein-coding
237390	chrX	119496251	119496550	+	0	NA	Intergenic	Intergenic	-27280	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
213244	chr7	134127121	134127800	+	0	NA	exon (NM_001365701, exon 1 of 16)	exon (NM_001365701, exon 1 of 16)	120	NM_144648	136332		NM_144648	ENSG00000155530	LRGUK	CFAP246	leucine rich repeats and guanylate kinase domain containing	protein-coding
47541	chr12	4280901	4281100	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-4816	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
197773	chr6	87589451	87590930	+	0	NA	promoter-TSS (NM_020320)	promoter-TSS (NM_020320)	55	NM_012381	23595		NM_012381	ENSG00000135336	ORC3	LAT|LATHEO|ORC3L	origin recognition complex subunit 3	protein-coding
114921	chr19	13958921	13959380	+	0	NA	exon (NM_138353, exon 7 of 13)	exon (NM_138353, exon 7 of 13)	-5758	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
16163	chr1	153770901	153771300	+	0	NA	intron (NM_001324475, intron 26 of 30).2	intron (NM_001324475, intron 26 of 30).2	-4307	NR_145826	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
134973	chr2	152189901	152190100	+	0	NA	Intergenic	Intergenic	-14237	NM_005843	10254		NM_005843	ENSG00000115145	STAM2	Hbp|STAM2A|STAM2B	signal transducing adaptor molecule 2	protein-coding
105567	chr18	91721	91980	+	0	NA	Intergenic	AluJb|SINE|Alu	-17215	NR_033770	727758		NR_033770	ENSG00000290877	ROCK1P1	ROCK1P	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
235569	chrX	47382071	47382630	+	0	NA	intron (NM_003446, intron 1 of 3)	AluSx|SINE|Alu	-6300	NR_003710	100124540		NR_003710	ENSG00000221459	SNORA11C	-	small nucleolar RNA, H/ACA box 11C	snoRNA
48722	chr12	10702671	10703200	+	0	NA	intron (NM_003651, intron 7 of 9)	intron (NM_003651, intron 7 of 9)	20388	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
74459	chr15	59688501	59690150	+	0	NA	promoter-TSS (NM_001320674)	promoter-TSS (NM_001320674)	-5	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
41865	chr11	67203701	67203980	+	0	NA	intron (NM_012308, intron 5 of 20)	AluSz|SINE|Alu	-36174	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
108893	chr18	79418851	79419250	+	0	NA	intron (NM_172389, intron 2 of 9)	AluJr|SINE|Alu	18751	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
231894	chr9	133058251	133058350	+	0	NA	3' UTR (NM_001122823, exon 12 of 12)	3' UTR (NM_001122823, exon 12 of 12)	-3681	NM_001807	1056		NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
124624	chr2	1388201	1388430	+	0	NA	Intergenic	L1PA5|LINE|L1	-25146	NM_000547	7173		NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
36507	chr11	6410951	6411250	+	0	NA	exon (NM_145689, exon 2 of 14)	exon (NM_145689, exon 2 of 14)	-5437	NM_001257320	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
33883	chr10	124454621	124454900	+	0	NA	Intergenic	Intergenic	-4725	NM_001146340	390010		NM_001146340	ENSG00000229544	NKX1-2	C10orf121|NKX-1.1|bB238F13.2	NK1 homeobox 2	protein-coding
158205	chr22	50254671	50254930	+	0	NA	intron (NM_001303252, intron 10 of 10)	intron (NM_001303252, intron 10 of 10)	-3535	NM_001159286	83933		NM_032019	ENSG00000100429	HDAC10	HD10	histone deacetylase 10	protein-coding
235680	chrX	48631321	48631800	+	0	NA	Intergenic	Intergenic	34068	NM_017883	64743		NM_017883	ENSG00000101940	WDR13	MG21	WD repeat domain 13	protein-coding
127076	chr2	37552221	37552480	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	119292	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
41890	chr11	67253801	67254630	+	0	NA	exon (NM_001256405, exon 9 of 10)	exon (NM_001256405, exon 9 of 10)	-12258	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
10735	chr1	76170301	76170780	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	95794	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
135186	chr2	158191101	158191580	+	0	NA	intron (NM_001301684, intron 9 of 11)	intron (NM_001301684, intron 9 of 11)	24690	NR_038850	554201		NR_038850	ENSG00000227480	CCDC148-AS1	-	CCDC148 antisense RNA 1	ncRNA
194026	chr6	31828801	31829700	+	0	NA	exon (NM_005346, exon 1 of 1).2	exon (NM_005346, exon 1 of 1).2	1512	NM_005346	3304		NM_005346	ENSG00000204388	HSPA1B	HSP70-1|HSP70-1B|HSP70-2|HSP70.1|HSP70.2|HSP72|HSPA1|HSX70	heat shock protein family A (Hsp70) member 1B	protein-coding
201595	chr6	149352621	149353080	+	0	NA	intron (NM_001369506, intron 2 of 7)	MER5A|DNA|hAT-Charlie	34550	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
69676	chr14	98138521	98139350	+	0	NA	Intergenic	Intergenic	-160811	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
156172	chr22	40219201	40219630	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	41490	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
105710	chr18	2693501	2693900	+	0	NA	intron (NM_015295, intron 7 of 47)	AluSx|SINE|Alu	37974	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
52514	chr12	56056371	56056530	+	0	NA	Intergenic	L2a|LINE|L2	14532	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
73170	chr15	41485201	41485600	+	0	NA	Intergenic	Intergenic	-8474	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
148085	chr20	63295601	63296480	+	0	NA	intron (NM_020882, intron 2 of 35)	CpG	2854	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
197674	chr6	85498871	85499250	+	0	NA	Intergenic	Intergenic	48977	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
28665	chr10	60238201	60238650	+	0	NA	intron (NM_001204403, intron 8 of 43)	L1MEf|LINE|L1	-97409	NM_001149	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
66658	chr14	63884301	63884500	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	31396	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
46749	chr11	129331871	129332050	+	0	NA	Intergenic	Intergenic	-43888	NM_003658	8538		NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
144408	chr20	35283821	35285400	+	0	NA	promoter-TSS (NR_109815)	promoter-TSS (NR_109815)	107	NM_181468	3692		NM_002212	ENSG00000242372	EIF6	CAB|EIF3A|ITGB4BP|b(2)gcn|eIF-6|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding
17833	chr1	159906901	159907650	+	0	NA	Intergenic	MER21A|LTR|ERVL	-7110	NM_012337	25790		NM_012337	ENSG00000213085	CFAP45	CCDC19|HTX11|NESG1	cilia and flagella associated protein 45	protein-coding
189895	chr5	177340371	177340530	+	0	NA	intron (NM_006816, intron 2 of 7)	L1PA16|LINE|L1	11218	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
171877	chr4	773721	774580	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7698	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
113047	chr19	8047171	8047530	+	0	NA	Intergenic	AluJo|SINE|Alu	-5412	NM_001201359	6370		NM_005624	ENSG00000131142	CCL25	Ck beta-15|Ckb15|SCYA25|TECK|TECKvar	C-C motif chemokine ligand 25	protein-coding
79687	chr16	1260851	1260950	+	0	NA	Intergenic	CpG	4831	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
180083	chr5	1111221	1112600	+	0	NA	exon (NM_006598, exon 1 of 24).2	exon (NM_006598, exon 1 of 24).2	153	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
124723	chr2	4048151	4048530	+	0	NA	Intergenic	Intergenic	74179	NR_136322	105373394		NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
87244	chr16	69756051	69756630	+	0	NA	Intergenic	Intergenic	-1372	NR_074074	28987		NM_014062	ENSG00000141101	NOB1	ART-4|MST158|MSTP158|NOB1P|PSMD8BP1	NIN1 (RPN12) binding protein 1 homolog	protein-coding
33721	chr10	121930101	121930630	+	0	NA	intron (NR_120495, intron 1 of 1)	LTR5B|LTR|ERVK	-1564	NM_001288736	11101		NM_007041	ENSG00000107669	ATE1	-	arginyltransferase 1	protein-coding
28690	chr10	60781421	60781880	+	0	NA	intron (NM_033379, intron 2 of 6)	intron (NM_033379, intron 2 of 6)	3172	NM_001786	983		NM_001786	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin dependent kinase 1	protein-coding
191645	chr6	13354471	13354630	+	0	NA	Intergenic	Intergenic	-25967	NM_001143964	51256		NM_016495	ENSG00000145979	TBC1D7	MGCPH|PIG51|TBC7	TBC1 domain family member 7	protein-coding
182385	chr5	61164921	61165180	+	0	NA	intron (NR_109908, intron 1 of 3)	AluSc|SINE|Alu	-2582	NM_001048249	643155		NM_001048249	ENSG00000188725	SMIM15	C5orf43	small integral membrane protein 15	protein-coding
198448	chr6	106114571	106115580	+	0	NA	Intergenic	Intergenic	16134	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
141015	chr2	238164721	238165180	+	0	NA	intron (NM_001291832, intron 6 of 7)	intron (NM_001291832, intron 6 of 7)	5980	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
184506	chr5	100896421	100896680	+	0	NA	intron (NM_175052, intron 1 of 2)	L1MA7|LINE|L1	6732	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
173391	chr4	7969121	7971000	+	0	NA	intron (NM_001286688, intron 14 of 14)	intron (NM_001286688, intron 14 of 14)	-30134	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
24134	chr1	235831901	235832100	+	0	NA	intron (NM_001301365, intron 2 of 52)	Kanga1a|DNA|TcMar-Tc2	21060	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
78827	chr15	99719201	99719600	+	0	NA	Intergenic	L1MC4a|LINE|L1	14037	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
60040	chr13	32669101	32669380	+	0	NA	intron (NM_015032, intron 7 of 34)	intron (NM_015032, intron 7 of 34)	82788	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
48526	chr12	10159251	10159350	+	0	NA	3' UTR (NM_002543, exon 6 of 6)	3' UTR (NM_002543, exon 6 of 6)	-11213	NM_001384894	120939		NM_153022	ENSG00000165685	TMEM52B	C12orf59	transmembrane protein 52B	protein-coding
57347	chr12	121770921	121771180	+	0	NA	intron (NM_001080825, intron 7 of 11)	intron (NM_001080825, intron 7 of 11)	22638	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
237529	chrX	120309051	120310280	+	0	NA	intron (NM_001104544, intron 1 of 8)	intron (NM_001104544, intron 1 of 8)	1796	NM_001104544	55026		NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
45503	chr11	118658601	118660300	+	0	NA	exon (NM_001301065, exon 11 of 14)	exon (NM_001301065, exon 11 of 14)	15450	NR_106773	102466719		NR_106773	ENSG00000284246	MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
107527	chr18	48408901	48409550	+	0	NA	intron (NM_001371286, intron 1 of 4)	CpG-12532	158	NM_001371285	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
30567	chr10	79828401	79828650	+	0	NA	TTS (NR_029407)	TTS (NR_029407)	1786	NM_001355263	283008		NM_001355263	ENSG00000228570	NUTM2E	FAM22E	NUT family member 2E	protein-coding
182559	chr5	65924151	65924250	+	0	NA	Intergenic	Intergenic	-2354	NM_001006600	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
173846	chr4	21948571	21949130	+	0	NA	promoter-TSS (NM_147182)	promoter-TSS (NM_147182)	-99	NM_147182	80333		NM_025221	ENSG00000185774	KCNIP4	CALP|KCHIP4	potassium voltage-gated channel interacting protein 4	protein-coding
63194	chr13	113777501	113777700	+	0	NA	intron (NM_001348663, intron 3 of 7)	intron (NM_001348663, intron 3 of 7)	18374	NM_182614	348013		NM_182614	ENSG00000184497	TMEM255B	FAM70B	transmembrane protein 255B	protein-coding
175105	chr4	54271921	54272050	+	0	NA	intron (NM_001347829, intron 8 of 22)	(C)n|Simple_repeat|Simple_repeat	38025	NM_001347830	5156		NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
26612	chr10	22324821	22326400	+	0	NA	intron (NM_005180, intron 1 of 9)	CpG	4511	NM_005180	648		NM_005180	ENSG00000168283	BMI1	FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1	BMI1 proto-oncogene, polycomb ring finger	protein-coding
111076	chr19	3171271	3171430	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7419	NM_003775	8698		NM_003775	ENSG00000125910	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
8964	chr1	44423721	44424180	+	0	NA	promoter-TSS (NM_001319957)	promoter-TSS (NM_001319957)	-51	NM_001319957	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
115153	chr19	14404001	14405100	+	0	NA	exon (NM_078481, exon 13 of 20)	exon (NM_078481, exon 13 of 20)	14791	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
150755	chr21	43778551	43779280	+	0	NA	Intergenic	LTR26C|LTR|ERV1	-2607	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
10103	chr1	58968101	58968850	+	0	NA	Intergenic	Intergenic	-52001	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
85427	chr16	50341101	50341580	+	0	NA	intron (NM_013263, intron 5 of 16)	intron (NM_013263, intron 5 of 16)	27648	NM_001173984	29117		NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4|SMARCI1	bromodomain containing 7	protein-coding
223275	chr8	143727301	143727500	+	0	NA	exon (NM_198488, exon 5 of 5)	exon (NM_198488, exon 5 of 5)	5753	NR_039810	100616318		NR_039810	ENSG00000265660	MIR4664	-	microRNA 4664	ncRNA
43051	chr11	74282651	74283000	+	0	NA	intron (NM_001288748, intron 7 of 12)	intron (NM_001288748, intron 7 of 12)	-28537	NR_120556	101928580		NR_120556	ENSG00000246211	P4HA3-AS1	-	P4HA3 antisense RNA 1	ncRNA
99809	chr17	51435051	51435830	+	0	NA	promoter-TSS (NR_146897)	promoter-TSS (NR_146897)	13	NR_146897	105371828		NR_146897	ENSG00000267452	LINC02073	-	long intergenic non-protein coding RNA 2073	ncRNA
55067	chr12	96490751	96491200	+	0	NA	intron (NM_001367885, intron 1 of 68)	FRAM|SINE|Alu	1398	NM_001367885	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
2597	chr1	9883521	9883930	+	0	NA	5' UTR (NM_020248, exon 2 of 6)	5' UTR (NM_020248, exon 2 of 6)	26544	NM_020248	56998		NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
64940	chr14	35808301	35809830	+	0	NA	5' UTR (NM_001346249, exon 1 of 42)	5' UTR (NM_001346249, exon 1 of 42)	230	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
152931	chr22	22802401	22803130	+	0	NA	Intergenic	Intergenic	-20011	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
6885	chr1	31414671	31414830	+	0	NA	5' UTR (NM_001199039, exon 1 of 11)	5' UTR (NM_001199039, exon 1 of 11)	937	NM_018565	347735		NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
90397	chr17	1295601	1296350	+	0	NA	intron (NM_172367, intron 2 of 2)	MIRc|SINE|MIR	16313	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
38052	chr11	35168701	35169780	+	0	NA	intron (NM_001202557, intron 1 of 8)	L2b|LINE|L2	6290	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
104392	chr17	81040751	81041550	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	5999	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
195019	chr6	35466701	35466900	+	0	NA	3' UTR (NM_021922, exon 10 of 10)	3' UTR (NM_021922, exon 10 of 10)	-1601	NM_007104	4736		NM_007104	ENSG00000198755	RPL10A	CSA19|Csa-19|L10A|NEDD6|uL1	ribosomal protein L10a	protein-coding
84167	chr16	29804071	29804230	+	0	NA	intron (NM_001256269, intron 12 of 14)	intron (NM_001256269, intron 12 of 14)	-1974	NM_001276275	4150		NM_002383	ENSG00000103495	MAZ	PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87	MYC associated zinc finger protein	protein-coding
145649	chr20	44898001	44898200	+	0	NA	intron (NM_003404, intron 2 of 6)	MLT1I|LTR|ERVL-MaLR	-11960	NM_001372179	80336		NM_001124756	ENSG00000101104	PABPC1L	C20orf119|EPAB|PABPC1L1|dJ1069P2.3	poly(A) binding protein cytoplasmic 1 like	protein-coding
71584	chr14	106505771	106505930	+	0	NA	Intergenic	Intergenic	23411	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
113404	chr19	9433921	9434230	+	0	NA	5' UTR (NM_001370387, exon 4 of 11)	5' UTR (NM_001370387, exon 4 of 11)	1498	NM_001370384	10781		NM_006631	ENSG00000174652	ZNF266	HZF1	zinc finger protein 266	protein-coding
96616	chr17	40556921	40557280	+	0	NA	intron (NM_001301714, intron 1 of 1)	(CT)n|Simple_repeat|Simple_repeat	3294	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
123451	chr19	54144351	54144650	+	0	NA	intron (NM_014516, intron 7 of 17).8	intron (NM_014516, intron 7 of 17).8	6738	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
671	chr1	1374461	1376530	+	0	NA	promoter-TSS (NM_001127229)	promoter-TSS (NM_001127229)	-288	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
191971	chr6	16150221	16150500	+	0	NA	Intergenic	Intergenic	8804	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
156229	chr22	40372121	40372450	+	0	NA	intron (NM_001350047, intron 1 of 20)	AluY|SINE|Alu	1691	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
39000	chr11	47716351	47716450	+	0	NA	TTS (NM_001318339)	TTS (NM_001318339)	-1031	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
83242	chr16	23868951	23869600	+	0	NA	intron (NM_212535, intron 2 of 16)	MLT1I|LTR|ERVL-MaLR	33292	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
230892	chr9	129222351	129222650	+	0	NA	Intergenic	Intergenic	-44239	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
142930	chr20	18564371	18564730	+	0	NA	Intergenic	Intergenic	-2870	NM_001348958	388789		NM_001348957	ENSG00000232388	SMIM26	LINC00493	small integral membrane protein 26	protein-coding
122168	chr19	48895551	48896600	+	0	NA	intron (NM_003323, intron 4 of 12)	intron (NM_003323, intron 4 of 12)	2669	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
184702	chr5	109330721	109331180	+	0	NA	Intergenic	Intergenic	-4581	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
38544	chr11	45910751	45911050	+	0	NA	exon (NM_004813, exon 10 of 11)	exon (NM_004813, exon 10 of 11)	-3629	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
228483	chr9	99954971	99955130	+	0	NA	intron (NM_017919, intron 4 of 7)	intron (NM_017919, intron 4 of 7)	48396	NM_017919	55014		NM_017919	ENSG00000136874	STX17	-	syntaxin 17	protein-coding
113172	chr19	8396521	8397250	+	0	NA	intron (NM_004218, intron 1 of 4)	L2a|LINE|L2	-6194	NR_038237	100507567		NR_038237	ENSG00000269386	RAB11B-AS1	MIR4999HG	RAB11B antisense RNA 1	ncRNA
225408	chr9	35054051	35054350	+	0	NA	Intergenic	L1PB1|LINE|L1	11960	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
195313	chr6	36597871	36598100	+	0	NA	intron (NM_003017, intron 2 of 5)	FLAM_C|SINE|Alu	3623	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
29444	chr10	70403721	70405100	+	0	NA	exon (NM_004096, exon 1 of 3)	exon (NM_004096, exon 1 of 3)	265	NM_004096	1979		NM_004096	ENSG00000148730	EIF4EBP2	4EBP2|PHASII	eukaryotic translation initiation factor 4E binding protein 2	protein-coding
131575	chr2	96820771	96820930	+	0	NA	intron (NM_199078, intron 1 of 6)	intron (NM_199078, intron 1 of 6)	4582	NM_017623	26505		NM_017623	ENSG00000168763	CNNM3	ACDP3	cyclin and CBS domain divalent metal cation transport mediator 3	protein-coding
4558	chr1	22044821	22045830	+	0	NA	Intergenic	L2c|LINE|L2	-7384	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
11256	chr1	89021301	89023450	+	0	NA	intron (NM_001319181, intron 1 of 9)	intron (NM_001319181, intron 1 of 9)	491	NM_018284	2635		NM_018284	ENSG00000117226	GBP3	-	guanylate binding protein 3	protein-coding
50572	chr12	48197421	48199000	+	0	NA	Intergenic	CpG	5082	NM_001004134	121275		NM_001004134	ENSG00000172640	OR10AD1	OR10AD1P|OR12-1	olfactory receptor family 10 subfamily AD member 1	protein-coding
171899	chr4	813971	814130	+	0	NA	intron (NM_006651, intron 2 of 3)	MER54B|LTR|ERVL	12079	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
154502	chr22	35693901	35694500	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-23672	NM_030642	80831		NM_030642	ENSG00000128313	APOL5	APOL-V|APOLV	apolipoprotein L5	protein-coding
199494	chr6	118659571	118659730	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	-8059	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
6587	chr1	28760551	28761550	+	0	NA	intron (NM_016258, intron 4 of 4)	Tigger3b|DNA|TcMar-Tigger	24110	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
24840	chr10	381551	382230	+	0	NA	intron (NM_014974, intron 17 of 36)	intron (NM_014974, intron 17 of 36)	201896	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
27316	chr10	30500401	30500600	+	0	NA	Intergenic	Charlie9|DNA|hAT-Charlie	65854	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
137544	chr2	197226301	197226900	+	0	NA	intron (NM_153697, intron 1 of 9)	AluSc8|SINE|Alu	28609	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
163771	chr3	52379871	52380230	+	0	NA	exon (NM_015512, exon 48 of 78)	exon (NM_015512, exon 48 of 78)	29958	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
175564	chr4	75638771	75638930	+	0	NA	Intergenic	Intergenic	-8322	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
186176	chr5	134198171	134198530	+	0	NA	intron (NR_149151, intron 6 of 6)	AluY|SINE|Alu	-21317	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
104143	chr17	80383771	80384750	+	0	NA	intron (NM_001256071, intron 59 of 67)	intron (NM_001256071, intron 59 of 67)	-30907	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
156047	chr22	39977351	39977680	+	0	NA	Intergenic	L2c|LINE|L2	-17439	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
191308	chr6	6711821	6712280	+	0	NA	Intergenic	Intergenic	-89224	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
46967	chr11	134741501	134741700	+	0	NA	intron (NR_147836, intron 1 of 1)	L1P5|LINE|L1	5655	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
221413	chr8	123538501	123539250	+	0	NA	intron (NM_001242463, intron 1 of 6)	intron (NM_001242463, intron 1 of 6)	2331	NM_058229	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
2895	chr1	11661771	11662400	+	0	NA	non-coding (NR_130909, exon 5 of 5)	non-coding (NR_130909, exon 5 of 5)	-2115	NM_018438	26270		NM_018438	ENSG00000116663	FBXO6	FBG2|FBS2|FBX6|Fbx6b	F-box protein 6	protein-coding
222690	chr8	141269821	141270080	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	15383	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
67004	chr14	67419971	67420400	+	0	NA	Intergenic	Intergenic	-8020	NM_016445	26499		NM_016445	ENSG00000100558	PLEK2	-	pleckstrin 2	protein-coding
1018	chr1	1862321	1862580	+	0	NA	intron (NM_001282538, intron 1 of 9)	X7A_LINE|LINE|CR1	28637	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
122196	chr19	48951821	48952330	+	0	NA	Intergenic	AluJb|SINE|Alu	-2785	NM_001291430	581		NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
35072	chr11	610751	610850	+	0	NA	intron (NM_001286582, intron 16 of 17)	intron (NM_001286582, intron 16 of 17)	5150	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
176311	chr4	87421871	87423030	+	0	NA	promoter-TSS (NM_001248011)	promoter-TSS (NM_001248011)	-123	NM_024047	53343		NM_024047	ENSG00000170502	NUDT9	NUDT10	nudix hydrolase 9	protein-coding
107845	chr18	54284771	54285400	+	0	NA	intron (NM_007195, intron 7 of 9)	intron (NM_007195, intron 7 of 9)	15511	NM_001351614	11201		NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
86295	chr16	58626951	58627350	+	0	NA	intron (NM_206999, intron 1 of 30)	AluSc|SINE|Alu	2676	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
206440	chr7	32868101	32868500	+	0	NA	3' UTR (NM_015483, exon 4 of 4)	3' UTR (NM_015483, exon 4 of 4)	23460	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
107370	chr18	46001001	46001600	+	0	NA	intron (NM_024430, intron 6 of 14)	L1MB3|LINE|L1	-33971	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
222946	chr8	143047921	143048780	+	0	NA	intron (NR_126399, intron 4 of 5)	LTR43-int|LTR|ERV1	7988	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
97588	chr17	44106301	44106730	+	0	NA	intron (NM_001382393, intron 3 of 26)	MER91A|DNA|hAT-Tip100	-9397	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
52226	chr12	54389671	54390530	+	0	NA	intron (NM_001130968, intron 1 of 6)	intron (NM_001130968, intron 1 of 6)	1198	NM_001130968	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
204993	chr7	6438351	6438850	+	0	NA	intron (NM_139179, intron 2 of 14)	intron (NM_139179, intron 2 of 14)	9354	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
70485	chr14	102084071	102084500	+	0	NA	intron (NM_001017963, intron 7 of 11)	AluSz|SINE|Alu	2759	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
190291	chr5	179589771	179590150	+	0	NA	intron (NM_001040452, intron 9 of 17).2	L2c|LINE|L2	13781	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
166681	chr3	120346601	120346800	+	0	NA	intron (NM_001099678, intron 1 of 3)	L2a|LINE|L2	2654	NM_001099678	116064		NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
131462	chr2	96345351	96346100	+	0	NA	intron (NM_001281711, intron 6 of 17)	intron (NM_001281711, intron 6 of 17)	9959	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
180555	chr5	14669251	14669350	+	0	NA	intron (NM_138348, intron 1 of 6)	AluSq2|SINE|Alu	4582	NM_138348	90268		NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM|IMD107	OTU deubiquitinase with linear linkage specificity	protein-coding
101874	chr17	74279551	74281230	+	0	NA	intron (NM_001172810, intron 1 of 13)	MIRc|SINE|MIR	6156	NM_023036	64446		NM_023036	ENSG00000171595	DNAI2	CILD9|DIC2|oda6	dynein axonemal intermediate chain 2	protein-coding
37211	chr11	14356101	14356930	+	0	NA	intron (NM_001177314, intron 1 of 5)	MIRb|SINE|MIR	1970	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
148553	chr20	64235321	64235630	+	0	NA	intron (NM_004535, intron 19 of 22)	intron (NM_004535, intron 19 of 22)	-20220	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
86260	chr16	58487551	58488150	+	0	NA	exon (NM_020465, exon 2 of 16)	exon (NM_020465, exon 2 of 16)	-12293	NR_040072	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
54499	chr12	92091751	92092450	+	0	NA	intron (NR_132341, intron 1 of 4)	MIR|SINE|MIR	49613	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
97312	chr17	43239081	43240230	+	0	NA	TTS (NR_002716).2	TTS (NR_002716).2	456	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
125139	chr2	9950751	9952100	+	0	NA	promoter-TSS (NM_198182)	promoter-TSS (NM_198182)	-268	NM_198182	29841		NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
238873	chrX	154533971	154534130	+	0	NA	exon (NM_001360016, exon 7 of 13)	exon (NM_001360016, exon 7 of 13)	-7188	NM_001377312	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
12632	chr1	109167551	109167680	+	0	NA	intron (NM_020775, intron 3 of 21)	AluJb|SINE|Alu	-18934	NM_001284353	57535		NM_020775	ENSG00000116299	ELAPOR1	EIG121|KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein-coding
218821	chr8	59113751	59114200	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	5172	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
152759	chr22	21756651	21756950	+	0	NA	Intergenic	Intergenic	-21006	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
77421	chr15	83890151	83890250	+	0	NA	exon (NM_001301110, exon 11 of 30)	exon (NM_001301110, exon 11 of 30)	-189987	NR_036652	648809		NR_036652		EFL1P1	EFTUD1P1|FAM42B|HsT19321	elongation factor like GTPase 1 pseudogene 1	pseudo
211942	chr7	112471821	112472380	+	0	NA	intron (NR_120333, intron 8 of 11)	intron (NR_120333, intron 8 of 11)	-8753	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
90027	chr16	89899071	89899230	+	0	NA	intron (NM_014972, intron 11 of 17)	intron (NM_014972, intron 11 of 17)	-19712	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
149428	chr21	31343521	31344250	+	0	NA	intron (NM_001353690, intron 1 of 27)	CpG	469	NM_001353694	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
198467	chr6	106178851	106179500	+	0	NA	Intergenic	MIR|SINE|MIR	80234	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
7682	chr1	35807871	35809300	+	0	NA	intron (NM_017629, intron 1 of 17)	CpG	569	NM_017629	192670		NM_017629	ENSG00000134698	AGO4	EIF2C4	argonaute RISC component 4	protein-coding
180632	chr5	16698651	16698750	+	0	NA	intron (NM_012334, intron 26 of 40)	AluY|SINE|Alu	-81642	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
14978	chr1	148032621	148032880	+	0	NA	Intergenic	Intergenic	6166	NR_004426	26864		NR_004426	ENSG00000206585	RNVU1-7	RNU1-26P|RNU1-6|RNU1-6P|RNU1-9|RNU1-9P|RNVU1-9|vU1.7|vU1.9	RNA, variant U1 small nuclear 7	snRNA
6166	chr1	27416501	27417300	+	0	NA	intron (NM_006990, intron 4 of 8)	Tigger19a|DNA|TcMar-Tigger	24278	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
12415	chr1	101344751	101345050	+	0	NA	intron (NR_126402, intron 2 of 4)	L3|LINE|CR1	21063	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
230725	chr9	128816921	128817430	+	0	NA	Intergenic	AluSg|SINE|Alu	-1325	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
113068	chr19	8211351	8211450	+	0	NA	intron (NM_024552, intron 2 of 11)	MIR|SINE|MIR	2030	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
103894	chr17	79799951	79800050	+	0	NA	Intergenic	CpG-11773	-2923	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
199006	chr6	110981471	110983180	+	0	NA	intron (NM_032194, intron 1 of 9)	intron (NM_032194, intron 1 of 9)	287	NM_032194	84154		NM_032194	ENSG00000197498	RPF2	BXDC1|bA397G5.4	ribosome production factor 2 homolog	protein-coding
145676	chr20	44985121	44985630	+	0	NA	intron (NM_006282, intron 4 of 10)	AluSz6|SINE|Alu	18863	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
218327	chr8	42794271	42794430	+	0	NA	Intergenic	MER61B|LTR|ERV1	-25564	NM_001199279	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
189526	chr5	173781751	173782400	+	0	NA	Intergenic	Intergenic	8867	NR_108028	101928154		NR_108028	ENSG00000254211	LINC01485	-	long intergenic non-protein coding RNA 1485	ncRNA
206054	chr7	27156021	27157080	+	0	NA	TTS (NR_038832)	TTS (NR_038832)	125	NM_006896	3204		NM_006896	ENSG00000122592	HOXA7	ANTP|HOX1|HOX1.1|HOX1A	homeobox A7	protein-coding
126500	chr2	28405951	28406050	+	0	NA	intron (NM_005253, intron 2 of 3)	intron (NM_005253, intron 2 of 3)	-11328	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
132643	chr2	108723871	108724400	+	0	NA	intron (NM_006267, intron 1 of 28)	HAL1|LINE|L1	4653	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
129703	chr2	70686901	70687100	+	0	NA	intron (NM_001185055, intron 8 of 11)	intron (NM_001185055, intron 8 of 11)	80715	NM_001185054	119		NM_001617	ENSG00000075340	ADD2	ADDB	adducin 2	protein-coding
157559	chr22	45866871	45867030	+	0	NA	Intergenic	CpG	106426	NR_039919	100616253		NR_039919	ENSG00000264160	MIR4762	-	microRNA 4762	ncRNA
194299	chr6	32763351	32763650	+	0	NA	promoter-TSS (NM_001300790)	promoter-TSS (NM_001300790)	32	NM_001300790	3120		NM_182549	ENSG00000232629	HLA-DQB2	DQB2|HLA-DQB1|HLA-DXB	major histocompatibility complex, class II, DQ beta 2	protein-coding
23061	chr1	226631021	226631330	+	0	NA	TTS (NM_002221)	TTS (NM_002221)	43893	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
8720	chr1	42461271	42461980	+	0	NA	TTS (NM_001287507)	TTS (NM_001287507)	-1661	NM_001355227	728621		NM_001080850	ENSG00000186409	CCDC30	PFD6L|PFDN6L	coiled-coil domain containing 30	protein-coding
179863	chr5	545351	545450	+	0	NA	Intergenic	LTR12|LTR|ERV1	-9518	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
218243	chr8	42143401	42143600	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-9446	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
201826	chr6	150037071	150037230	+	0	NA	Intergenic	Intergenic	-11618	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
100428	chr17	60674571	60675980	+	0	NA	Intergenic	AluSg4|SINE|Alu	-2576	NM_001320470	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
32643	chr10	103719151	103719450	+	0	NA	intron (NM_014631, intron 5 of 13)	intron (NM_014631, intron 5 of 13)	-27479	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
94927	chr17	32002601	32002800	+	0	NA	Intergenic	Intergenic	-4683	NM_001321350	114659		NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
66857	chr14	64983301	64984750	+	0	NA	intron (NM_001202559, intron 3 of 13)	intron (NM_001202559, intron 3 of 13)	-2870	NM_002028	2342		NM_002028	ENSG00000257365	FNTB	FPTB	farnesyltransferase, CAAX box, subunit beta	protein-coding
11776	chr1	92473721	92474550	+	0	NA	3' UTR (NM_001127215, exon 7 of 7)	3' UTR (NM_001127215, exon 7 of 7)	9819	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
106257	chr18	12327821	12328180	+	0	NA	TTS (NM_006796)	TTS (NM_006796)	19759	NM_032525	84617		NM_032525	ENSG00000176014	TUBB6	FPVEPD|HsT1601|TUBB-5	tubulin beta 6 class V	protein-coding
146075	chr20	47506901	47507680	+	0	NA	intron (NM_181659, intron 1 of 22)	intron (NM_181659, intron 1 of 22)	5403	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
236259	chrX	65871951	65872050	+	0	NA	Intergenic	L1PA11|LINE|L1	-146870	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
14741	chr1	145993671	145993830	+	0	NA	3' UTR (NM_006472, exon 8 of 8)	3' UTR (NM_006472, exon 8 of 8)	1994	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
10078	chr1	58786921	58787800	+	0	NA	intron (NR_108106, intron 1 of 1)	MLT1I-int|LTR|ERVL-MaLR	2209	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
119901	chr19	41562251	41562550	+	0	NA	intron (NM_001288773, intron 1 of 7)	L1ME3D|LINE|L1	12882	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
111049	chr19	3102151	3102450	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	7938	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
129954	chr2	73929701	73930000	+	0	NA	intron (NR_134895, intron 1 of 2)	L2a|LINE|L2	2970	NM_080918	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
59711	chr13	29707921	29708180	+	0	NA	Intergenic	Intergenic	60357	NR_135320	102723345		NR_135320		LOC102723345	-	uncharacterized LOC102723345	ncRNA
158182	chr22	50223871	50224280	+	0	NA	intron (NM_020461, intron 13 of 24)	intron (NM_020461, intron 13 of 24)	20948	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
161791	chr3	45105571	45107000	+	0	NA	intron (NM_022842, intron 4 of 8)	intron (NM_022842, intron 4 of 8)	40093	NM_022842	64866		NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
81507	chr16	8959871	8960950	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	3496	NM_003470	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
79181	chr16	309421	310430	+	0	NA	intron (NR_134879, intron 3 of 8)	intron (NR_134879, intron 3 of 8)	26761	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
7211	chr1	32295271	32295630	+	0	NA	intron (NM_004964, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	3367	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
154935	chr22	37224971	37225150	+	0	NA	TTS (NM_002872)	TTS (NM_002872)	-12583	NM_001051	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
5278	chr1	25095051	25096350	+	0	NA	Intergenic	L3|LINE|CR1	72197	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
173879	chr4	24559601	24560080	+	0	NA	intron (NM_001358, intron 3 of 13)	MER5A|DNA|hAT-Charlie	24714	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
161460	chr3	42213871	42215030	+	0	NA	intron (NM_001042646, intron 14 of 15)	intron (NM_001042646, intron 14 of 15)	49497	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
41423	chr11	66056551	66056850	+	0	NA	intron (NM_006842, intron 5 of 21)	intron (NM_006842, intron 5 of 21)	3556	NR_145738	109616986		NR_145738		SNORD13F	-	small nucleolar RNA, C/D box 13F	snoRNA
105548	chr17	83201701	83201900	+	0	NA	Intergenic	Intergenic	-25097	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
176817	chr4	102550871	102551580	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-48739	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
129604	chr2	70096451	70096880	+	0	NA	Intergenic	Intergenic	9188	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
132744	chr2	109609471	109609630	+	0	NA	intron (NM_001321501, intron 1 of 9)	intron (NM_001321501, intron 1 of 9)	4117	NM_001321515	151011		NM_144710	ENSG00000186522	SEPTIN10	SEPT10|Septin-10	septin 10	protein-coding
119651	chr19	40817501	40817830	+	0	NA	Intergenic	AluSc8|SINE|Alu	-6565	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
79888	chr16	1543121	1544430	+	0	NA	intron (NM_024600, intron 2 of 2)	intron (NM_024600, intron 2 of 2)	10109	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
61089	chr13	48409601	48409830	+	0	NA	intron (NM_000321, intron 17 of 26)	AluSc|SINE|Alu	3398	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
220975	chr8	115418271	115418500	+	0	NA	exon (NM_001330599, exon 5 of 6)	exon (NM_001330599, exon 5 of 6)	249628	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
65081	chr14	39429551	39430080	+	0	NA	intron (NM_203301, intron 1 of 3)	intron (NM_203301, intron 1 of 3)	2685	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
41375	chr11	65983071	65984200	+	0	NA	Intergenic	Intergenic	-18444	NM_001143985	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
111192	chr19	3438921	3439180	+	0	NA	intron (NM_205843, intron 6 of 10)	MIR|SINE|MIR	41475	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
151112	chr21	44871821	44872100	+	0	NA	intron (NM_004339, intron 1 of 5)	intron (NM_004339, intron 1 of 5)	1730	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
187931	chr5	148866021	148866280	+	0	NA	Intergenic	Intergenic	39539	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
128395	chr2	55054001	55054730	+	0	NA	intron (NM_001321904, intron 2 of 9)	L2a|LINE|L2	-3093	NM_001321859	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133595	chr2	121735401	121735800	+	0	NA	intron (NM_032390, intron 2 of 6)	intron (NM_032390, intron 2 of 6)	1275	NM_032390	84365		NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
82080	chr16	14249571	14249800	+	0	NA	intron (NM_001365414, intron 11 of 14)	intron (NM_001365414, intron 11 of 14)	-52603	NR_132983	100129781		NR_132983	ENSG00000262454	MIR193BHG	HypERlnc|lincNORS	MIR193b-365a host gene	ncRNA
73527	chr15	43802401	43803300	+	0	NA	TTS (NR_037673)	TTS (NR_037673)	2251	NM_016400	25764		NM_016400	ENSG00000242028	HYPK	C15orf63|HSPC136	huntingtin interacting protein K	protein-coding
43826	chr11	86803751	86804050	+	0	NA	intron (NR_120591, intron 1 of 4)	intron (NR_120591, intron 1 of 4)	3358	NM_001293179	11098		NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	serine protease 23	protein-coding
94715	chr17	30712901	30713300	+	0	NA	intron (NR_144394, intron 1 of 8)	L2a|LINE|L2	3492	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
111343	chr19	3650401	3650600	+	0	NA	intron (NM_001300849, intron 8 of 16)	MER20|DNA|hAT-Charlie	-23685	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
193991	chr6	31769551	31770200	+	0	NA	intron (NM_025258, intron 8 of 16).6	intron (NM_025258, intron 8 of 16).6	-4287	NR_126423	104413891		NR_126423		SAPCD1-AS1	C6orf26-AS1	SAPCD1 antisense RNA 1	ncRNA
111227	chr19	3508721	3509630	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	2864	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
60611	chr13	42083171	42083620	+	0	NA	intron (NM_001204504, intron 2 of 29)	MIRc|SINE|MIR	34747	NM_178009	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
77509	chr15	84660351	84660680	+	0	NA	Intergenic	Intergenic	-2316	NM_021077	4828		NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
195160	chr6	35737371	35738180	+	0	NA	promoter-TSS (NR_027117)	promoter-TSS (NR_027117)	743	NM_001286576	221481		NM_145028	ENSG00000157343	ARMC12	C6orf81|SPGF90	armadillo repeat containing 12	protein-coding
119378	chr19	40195101	40195300	+	0	NA	intron (NM_002446, intron 1 of 9)	L2a|LINE|L2	3774	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
87076	chr16	68416321	68417000	+	0	NA	intron (NM_018667, intron 1 of 8)	L4_A_Mam|LINE|RTE-X	31848	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
94674	chr17	30378021	30380580	+	0	NA	exon (NM_001304, exon 1 of 21)	exon (NM_001304, exon 1 of 21)	373	NM_001304	1362		NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
125267	chr2	10442401	10442980	+	0	NA	intron (NM_001287190, intron 8 of 11)	intron (NM_001287190, intron 8 of 11)	4159	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
84369	chr16	30240451	30240750	+	0	NA	intron (NM_001321892, intron 3 of 8)	intron (NM_001321892, intron 3 of 8)	5255	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
26957	chr10	26595401	26595600	+	0	NA	Intergenic	Intergenic	5635	NR_026793	645528		NR_026793	ENSG00000290444	FAM238A	C10orf50|LINC00264|NCRNA00264|bA128B16.2	family with sequence similarity 238 member A	ncRNA
70296	chr14	101770721	101771630	+	0	NA	intron (NM_001352915, intron 2 of 14)	intron (NM_001352915, intron 2 of 14)	8805	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
4896	chr1	23800301	23801730	+	0	NA	promoter-TSS (NM_001008216)	promoter-TSS (NM_001008216)	-261	NM_001008216	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
205082	chr7	6644201	6644400	+	0	NA	intron (NM_001278559, intron 7 of 8)	intron (NM_001278559, intron 7 of 8)	6982	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
198838	chr6	109250671	109251050	+	0	NA	intron (NR_152435, intron 16 of 45)	L1PA2|LINE|L1	85029	NR_152435	221262		NM_173671	ENSG00000203799	CCDC162P	C6orf183|C6orf184|C6orf185|CCDC162	coiled-coil domain containing 162, pseudogene	pseudo
222979	chr8	143212571	143214180	+	0	NA	intron (NM_178172, intron 1 of 3)	intron (NM_178172, intron 1 of 3)	157	NM_178172	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
19893	chr1	183697951	183698050	+	0	NA	intron (NM_001297669, intron 2 of 18)	LTR33A_|LTR|ERVL	-44684	NM_203454	403314		NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4	protein-coding
87283	chr16	70025771	70026980	+	0	NA	intron (NR_003610, intron 8 of 25)	intron (NR_003610, intron 8 of 25)	-3971	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
86486	chr16	66998951	66999250	+	0	NA	intron (NM_173815, intron 2 of 11)	intron (NM_173815, intron 2 of 11)	-1439	NM_001190202	283848		NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
90199	chr17	415221	415680	+	0	NA	TTS (NM_001013672).2	TTS (NM_001013672).2	-1427	NR_136407	105371430		NR_136407	ENSG00000241525	LOC105371430	-	uncharacterized LOC105371430	ncRNA
19922	chr1	184392651	184393150	+	0	NA	intron (NM_030806, intron 1 of 5)	AluJb|SINE|Alu	5871	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
187759	chr5	144190971	144191130	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	-14341	NM_001370487	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
6355	chr1	27777871	27778530	+	0	NA	intron (NM_177424, intron 1 of 8)	intron (NM_177424, intron 1 of 8)	4981	NM_177424	23673		NM_177424	ENSG00000117758	STX12	STX13|STX14	syntaxin 12	protein-coding
75032	chr15	64111871	64112030	+	0	NA	intron (NM_001242933, intron 1 of 14)	intron (NM_001242933, intron 1 of 14)	15968	NM_003099	6642		NM_003099	ENSG00000028528	SNX1	HsT17379|VPS5	sorting nexin 1	protein-coding
76701	chr15	75801901	75802500	+	0	NA	Intergenic	Intergenic	-39885	NR_036198	100423035		NR_036198	ENSG00000284385	MIR4313	-	microRNA 4313	ncRNA
159726	chr3	15795651	15796300	+	0	NA	intron (NM_015199, intron 1 of 27)	intron (NM_015199, intron 1 of 27)	2004	NM_001349284	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
92441	chr17	8464571	8465300	+	0	NA	intron (NM_001025579, intron 9 of 9)	intron (NM_001025579, intron 9 of 9)	29051	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
221295	chr8	123007471	123007830	+	0	NA	Intergenic	AluJb|SINE|Alu	18122	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
168945	chr3	152370201	152370800	+	0	NA	intron (NM_001376837, intron 2 of 9)	L1PA7|LINE|L1	-29510	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
186149	chr5	134169751	134170400	+	0	NA	intron (NM_170679, intron 2 of 5)	AluSq2|SINE|Alu	6875	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
232729	chr9	136620621	136620880	+	0	NA	Intergenic	Intergenic	-3569	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
102727	chr17	76200601	76201650	+	0	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	39368	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
26435	chr10	17242121	17243180	+	0	NA	Intergenic	AluSz|SINE|Alu	-12665	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
113096	chr19	8279201	8280800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	28358	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
153016	chr22	23221721	23223300	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-40257	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
52703	chr12	56565501	56566000	+	0	NA	intron (NM_002898, intron 2 of 13)	intron (NM_002898, intron 2 of 13)	43930	NM_002898	5939		NM_002898	ENSG00000076067	RBMS2	SCR3	RNA binding motif single stranded interacting protein 2	protein-coding
108071	chr18	59900601	59901430	+	0	NA	3' UTR (NM_001382623, exon 2 of 2)	3' UTR (NM_001382623, exon 2 of 2)	1019	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
122072	chr19	48718851	48719050	+	0	NA	intron (NM_001130915, intron 2 of 9)	intron (NM_001130915, intron 2 of 9)	775	NM_001130915	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
216856	chr8	22615451	22615800	+	0	NA	intron (NM_021174, intron 12 of 20)	intron (NM_021174, intron 12 of 20)	10583	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
218570	chr8	55102651	55103080	+	0	NA	exon (NM_052898, exon 1 of 3)	exon (NM_052898, exon 1 of 3)	837	NM_052898	114786		NM_052898	ENSG00000206579	XKR4	XRG4|hXKR4	XK related 4	protein-coding
114558	chr19	12892851	12892950	+	0	NA	intron (NR_102316, intron 5 of 11)	AluSx|SINE|Alu	1740	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
69132	chr14	92538251	92539050	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	24869	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
33844	chr10	124226601	124228280	+	0	NA	Intergenic	Intergenic	-133842	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
186092	chr5	134112951	134113050	+	0	NA	Intergenic	Intergenic	-1681	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
211024	chr7	102409251	102409550	+	0	NA	intron (NR_038967, intron 8 of 8)	intron (NR_038967, intron 8 of 8)	-3545	NR_031669	100313829		NR_031669	ENSG00000221510	MIR548O	MIRN548O	microRNA 548o	ncRNA
57149	chr12	121243651	121244150	+	0	NA	3' UTR (NM_172214, exon 17 of 17)	3' UTR (NM_172214, exon 17 of 17)	30685	NM_001270486	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
197218	chr6	63665371	63665600	+	0	NA	intron (NM_001370348, intron 2 of 15)	AluSx1|SINE|Alu	18959	NM_015153	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
225064	chr9	33246221	33246480	+	0	NA	intron (NM_014471, intron 2 of 3)	intron (NM_014471, intron 2 of 3)	6183	NM_014471	27290		NM_014471	ENSG00000122711	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor Kazal type 4	protein-coding
235987	chrX	54032851	54033030	+	0	NA	intron (NM_001184896, intron 2 of 21)	L1MDa|LINE|L1	10207	NM_001184898	23133		NM_015107	ENSG00000172943	PHF8	JHDM1F|KDM7B|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
105989	chr18	6163221	6163300	+	0	NA	intron (NM_173464, intron 13 of 19)	(GT)n|Simple_repeat|Simple_repeat	-93484	NR_110765	101927150		NR_110765		L3MBTL4-AS1	-	L3MBTL4 antisense RNA 1	ncRNA
51735	chr12	53227171	53227530	+	0	NA	intron (NM_001243730, intron 2 of 8)	intron (NM_001243730, intron 2 of 8)	4859	NM_000966	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
222524	chr8	140568321	140569200	+	0	NA	intron (NM_012154, intron 3 of 18)	intron (NM_012154, intron 3 of 18)	56764	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
53540	chr12	67314821	67315480	+	0	NA	3' UTR (NM_001329676, exon 16 of 16)	3' UTR (NM_001329676, exon 16 of 16)	45792	NM_001329676	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
127776	chr2	44175651	44175950	+	0	NA	intron (NM_177969, intron 1 of 4)	AluSg|SINE|Alu	6925	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
15422	chr1	150263151	150263800	+	0	NA	intron (NM_012113, intron 8 of 10)	intron (NM_012113, intron 8 of 10)	1781	NR_145745	109616989		NR_145745		SNORD13C	-	small nucleolar RNA, C/D box 13C	snoRNA
83013	chr16	22217971	22218130	+	0	NA	intron (NM_013302, intron 1 of 17).2	MLT1K|LTR|ERVL-MaLR	11772	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
36577	chr11	6667371	6668180	+	0	NA	Intergenic	L1MB7|LINE|L1	-11966	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
180684	chr5	21458971	21460080	+	0	NA	promoter-TSS (NR_027026)	promoter-TSS (NR_027026)	45	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
30646	chr10	80464641	80464850	+	0	NA	intron (NM_001351268, intron 2 of 9)	intron (NM_001351268, intron 2 of 9)	-3496	NM_001351272	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
142803	chr20	13995201	13995630	+	0	NA	promoter-TSS (NM_080676)	promoter-TSS (NM_080676)	-82	NM_001363752	80343		NM_025229	ENSG00000101251	SEL1L2	C20orf50|sel-1L2	SEL1L2 adaptor subunit of SYVN1 ubiquitin ligase	protein-coding
215497	chr7	158590101	158590630	+	0	NA	promoter-TSS (NR_132379)	promoter-TSS (NR_132379)	-264	NR_132379	105375616		NR_132379		LINC01022	-	long intergenic non-protein coding RNA 1022	ncRNA
206115	chr7	27239451	27240680	+	0	NA	Intergenic	Intergenic	-2737	NM_001989	2128		NM_001989	ENSG00000106038	EVX1	EVX-1	even-skipped homeobox 1	protein-coding
111572	chr19	4061101	4062000	+	0	NA	intron (NM_015898, intron 1 of 2)	(GCCC)n|Simple_repeat|Simple_repeat	3979	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
219389	chr8	70523721	70524380	+	0	NA	Intergenic	L2b|LINE|L2	52916	NR_110653	101926892		NR_110653	ENSG00000253967	LINC03020	-	long intergenic non-protein coding RNA 3020	ncRNA
133175	chr2	112811901	112812130	+	0	NA	Intergenic	Intergenic	24764	NM_000576	3553		NM_000576	ENSG00000125538	IL1B	IL-1|IL1-BETA|IL1F2|IL1beta	interleukin 1 beta	protein-coding
12939	chr1	110686201	110686480	+	0	NA	Intergenic	Intergenic	-11400	NM_002232	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
66819	chr14	64753371	64753930	+	0	NA	exon (NM_001024858, exon 32 of 35)	exon (NM_001024858, exon 32 of 35)	32036	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
96698	chr17	41341021	41342280	+	0	NA	Intergenic	Charlie15b|DNA|hAT-Charlie	9178	NM_004138	3883		NM_004138	ENSG00000006059	KRT33A	HA3I|Ha-3I|K33A|KRTHA3A|Krt1-3|hHa3-I	keratin 33A	protein-coding
139816	chr2	230348871	230349030	+	0	NA	intron (NM_138402, intron 2 of 18)	MER45A|DNA|hAT-Tip100	21757	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
212899	chr7	130890551	130890930	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-13201	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
122988	chr19	50817751	50818700	+	0	NA	TTS (NM_002257)	TTS (NM_002257)	544	NR_038359	284365		NR_038359	ENSG00000293414	LINC01869	-	long intergenic non-protein coding RNA 1869	ncRNA
35194	chr11	799951	800050	+	0	NA	exon (NM_145887, exon 15 of 16)	exon (NM_145887, exon 15 of 16)	-1719	NM_001191061	79751		NM_024698	ENSG00000177542	SLC25A22	DEE3|EIEE3|GC-1|GC1|NET44	solute carrier family 25 member 22	protein-coding
27156	chr10	28367421	28368980	+	0	NA	Intergenic	Intergenic	-65136	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
224344	chr9	6807201	6807930	+	0	NA	intron (NR_148677, intron 3 of 21)	SVA_F|Retroposon|SVA	49592	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
12288	chr1	100714621	100715300	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-4680	NM_080682	7412		NM_001078	ENSG00000162692	VCAM1	CD106|INCAM-100	vascular cell adhesion molecule 1	protein-coding
197073	chr6	53797351	53797650	+	0	NA	intron (NM_018214, intron 1 of 13)	intron (NM_018214, intron 1 of 13)	2495	NM_018214	55227		NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
139531	chr2	224580421	224581400	+	0	NA	intron (NM_003590, intron 1 of 15)	intron (NM_003590, intron 1 of 15)	4453	NM_003590	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
118668	chr19	37551221	37551730	+	0	NA	non-coding (NR_038249, exon 1 of 4)	non-coding (NR_038249, exon 1 of 4)	101	NM_152606	163255		NM_152606	ENSG00000171817	ZNF540	Nbla10512	zinc finger protein 540	protein-coding
111465	chr19	3934471	3935030	+	0	NA	intron (NM_170678, intron 2 of 7)	AluSz|SINE|Alu	1279	NM_001375469	27231		NM_014446	ENSG00000077009	NMRK2	ITGB1BP3|MIBP|NRK2	nicotinamide riboside kinase 2	protein-coding
141715	chr2	241851351	241851450	+	0	NA	intron (NM_005018, intron 4 of 4)	intron (NM_005018, intron 4 of 4)	7494	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
125425	chr2	11777321	11777580	+	0	NA	intron (NM_001349204, intron 7 of 21)	intron (NM_001349204, intron 7 of 21)	10006	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
124023	chr19	55481351	55481650	+	0	NA	exon (NM_033113, exon 3 of 3)	exon (NM_033113, exon 3 of 3)	-3688	NM_020378	57106		NM_020378	ENSG00000090971	NAT14	KLP1	N-acetyltransferase 14 (putative)	protein-coding
62129	chr13	95678901	95679800	+	0	NA	intron (NM_006260, intron 1 of 11)	MER5A|DNA|hAT-Charlie	2211	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
196424	chr6	43432971	43433130	+	0	NA	exon (NM_001198934, exon 3 of 22)	exon (NM_001198934, exon 3 of 22)	1299	NM_033450	89845		NM_033450	ENSG00000124574	ABCC10	EST182763|MRP7|SIMRP7	ATP binding cassette subfamily C member 10	protein-coding
180783	chr5	32207751	32207850	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-33481	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
39825	chr11	62042101	62042550	+	0	NA	Intergenic	Intergenic	-74691	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
232268	chr9	134419571	134420480	+	0	NA	intron (NM_001291921, intron 4 of 8)	intron (NM_001291921, intron 4 of 8)	13465	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
113747	chr19	10496671	10496930	+	0	NA	intron (NM_012289, intron 2 of 5)	AluSx|SINE|Alu	5971	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
13247	chr1	112702051	112702150	+	0	NA	intron (NM_001042678, intron 4 of 4)	intron (NM_001042678, intron 4 of 4)	4956	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
182100	chr5	56049201	56049400	+	0	NA	Intergenic	AluY|SINE|Alu	54133	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
158134	chr22	50173201	50173700	+	0	NA	intron (NM_052839, intron 1 of 2)	intron (NM_052839, intron 1 of 2)	2719	NM_052839	56666		NM_052839	ENSG00000073150	PANX2	PX2|hPANX2	pannexin 2	protein-coding
103358	chr17	78111501	78111880	+	0	NA	3' UTR (NM_001374593, exon 19 of 19)	3' UTR (NM_001374593, exon 19 of 19)	17065	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
216364	chr8	17614301	17614700	+	0	NA	intron (NM_001372073, intron 2 of 5)	intron (NM_001372073, intron 2 of 5)	37284	NM_001372073	5157		NM_006207	ENSG00000104213	PDGFRL	PDGRL|PRLTS	platelet derived growth factor receptor like	protein-coding
215836	chr8	6800751	6801200	+	0	NA	Intergenic	Intergenic	34549	NM_207411	389610		NM_207411	ENSG00000275591	XKR5	HARL2754|UNQ2754|XRG5A|XRG5BM	XK related 5	protein-coding
73468	chr15	43506521	43506780	+	0	NA	intron (NM_005657, intron 1 of 27)	intron (NM_005657, intron 1 of 27)	3990	NM_005657	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
137926	chr2	201060001	201060230	+	0	NA	intron (NM_173822, intron 1 of 11)	L2c|LINE|L2	11556	NM_001321619	285172		NM_173822	ENSG00000155744	HYCC2	FAM126B	hyccin PI4KA lipid kinase complex subunit 2	protein-coding
120545	chr19	44925271	44925950	+	0	NA	Intergenic	Intergenic	-1193	NR_028414	342		NR_028412	ENSG00000291128	APOC1P1	-	apolipoprotein C1 pseudogene 1	pseudo
14162	chr1	121269701	121270780	+	0	NA	intron (NM_001271872, intron 2 of 9)	HAL1b|LINE|L1	85265	NM_001271872	653464		NM_001271872	ENSG00000171943	SRGAP2C	SRGAP2P1	SLIT-ROBO Rho GTPase activating protein 2C	protein-coding
40624	chr11	64702021	64702280	+	0	NA	intron (NM_015080, intron 2 of 22)	SVA_D|Retroposon|SVA	21047	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
148785	chr21	8220201	8221090	+	0	NA	intron (NR_003287, intron 1 of 2)	CpG	6757	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
73100	chr15	40995701	40995900	+	0	NA	intron (NR_104038, intron 28 of 34)	intron (NR_104038, intron 28 of 34)	42329	NM_024111	79094		NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
105010	chr17	82033021	82034000	+	0	NA	exon (NM_005052, exon 5 of 6)	exon (NM_005052, exon 5 of 6)	1832	NM_001316307	5881		NM_005052	ENSG00000169750	RAC3	-	Rac family small GTPase 3	protein-coding
215511	chr7	158703071	158703230	+	0	NA	intron (NR_104054, intron 2 of 30)	Tigger3a|DNA|TcMar-Tigger	1654	NM_001281932	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
97152	chr17	42569751	42569850	+	0	NA	intron (NM_170607, intron 6 of 7)	intron (NM_170607, intron 6 of 7)	2700	NM_198204	6945		NM_013383	ENSG00000108788	MLX	MAD7|MXD7|TCFL4|TF4|bHLHd13	MAX dimerization protein MLX	protein-coding
20587	chr1	198752601	198752800	+	0	NA	exon (NM_080921, exon 28 of 30)	exon (NM_080921, exon 28 of 30)	106282	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
69606	chr14	97456751	97457480	+	0	NA	Intergenic	Intergenic	-1701	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
7853	chr1	36368901	36369850	+	0	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	16549	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
205978	chr7	26175121	26175830	+	0	NA	intron (NM_004289, intron 1 of 3)	intron (NM_004289, intron 1 of 3)	23277	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
194726	chr6	33822671	33822830	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-18747	NM_001040109	4295		NM_002418	ENSG00000096395	MLN	-	motilin	protein-coding
218190	chr8	41997721	41998380	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-53700	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
159299	chr3	12990351	12990930	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-3539	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
119219	chr19	39458371	39458750	+	0	NA	intron (NM_001111020, intron 5 of 29)	intron (NM_001111020, intron 5 of 29)	-9662	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
118696	chr19	38207671	38208130	+	0	NA	3' UTR (NM_015073, exon 22 of 22)	3' UTR (NM_015073, exon 22 of 22)	16322	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
158616	chr3	4867911	4869880	+	0	NA	Intergenic	Intergenic	37606	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
56562	chr12	117064921	117065430	+	0	NA	intron (NR_031766, intron 2 of 7)	L2a|LINE|L2	34241	NR_031766	54997		NM_017899	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
3387	chr1	15731801	15732200	+	0	NA	exon (NM_015164, exon 17 of 20)	exon (NM_015164, exon 17 of 20)	-4258	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
124329	chr19	58185401	58186250	+	0	NA	exon (NM_016325, exon 3 of 7)	exon (NM_016325, exon 3 of 7)	2764	NM_133502	10782		NM_016324	ENSG00000171606	ZNF274	HFB101|ZF2|ZKSCAN19|ZSCAN51	zinc finger protein 274	protein-coding
63072	chr13	113163821	113164080	+	0	NA	intron (NM_001256134, intron 5 of 8)	intron (NM_001256134, intron 5 of 8)	5296	NM_001256134	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
232296	chr9	134456001	134457780	+	0	NA	Intergenic	Intergenic	50330	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
99167	chr17	49402321	49402580	+	0	NA	Intergenic	Intergenic	12408	NM_001281496	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
134638	chr2	144430501	144431100	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-88814	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
161873	chr3	45905051	45905350	+	0	NA	intron (NM_001276379, intron 2 of 9)	intron (NM_001276379, intron 2 of 9)	10524	NM_001276378	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
122549	chr19	49651651	49652280	+	0	NA	exon (NM_021228, exon 7 of 11)	exon (NM_021228, exon 7 of 11)	9756	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
151686	chr22	17156921	17157280	+	0	NA	intron (NM_017829, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	2177	NM_033070	27440		NM_017829	ENSG00000069998	HDHD5	CECR5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding
205034	chr7	6526171	6527300	+	0	NA	exon (NM_001145118, exon 3 of 22)	exon (NM_001145118, exon 3 of 22)	24701	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
154006	chr22	30413901	30414780	+	0	NA	intron (NM_033382, intron 8 of 10)	intron (NM_033382, intron 8 of 10)	-11428	NM_001003704	51537		NM_016498	ENSG00000242114	MTFP1	HSPC242|MTP18	mitochondrial fission process 1	protein-coding
120827	chr19	45495891	45497590	+	0	NA	intron (NM_005619, intron 1 of 10)	CpG	307	NM_005619	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
16994	chr1	155991121	155991380	+	0	NA	Intergenic	MIR|SINE|MIR	-11690	NM_001350112	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
95263	chr17	35489471	35489630	+	0	NA	intron (NM_001363830, intron 2 of 4)	AluJb|SINE|Alu	-1811	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
51008	chr12	49675321	49675580	+	0	NA	intron (NM_175736, intron 1 of 25)	intron (NM_175736, intron 1 of 25)	31955	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
40977	chr11	65378651	65379630	+	0	NA	intron (NR_147972, intron 6 of 8)	intron (NR_147972, intron 6 of 8)	2831	NM_001352384	283130		NM_182556	ENSG00000162241	SLC25A45	-	solute carrier family 25 member 45	protein-coding
169848	chr3	177187971	177188780	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluSq2|SINE|Alu	8103	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
103671	chr17	78790871	78791230	+	0	NA	intron (NM_001385179, intron 20 of 20)	intron (NM_001385179, intron 20 of 20)	-8708	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
50706	chr12	48928251	48928750	+	0	NA	Intergenic	AluSz|SINE|Alu	-2953	NM_001143782	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
205301	chr7	11212101	11212300	+	0	NA	Intergenic	Intergenic	238328	NR_033436	9678		NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
81120	chr16	4381901	4383130	+	0	NA	exon (NM_138440, exon 2 of 2)	exon (NM_138440, exon 2 of 2)	10667	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
92340	chr17	8163901	8164900	+	0	NA	Intergenic	Intergenic	-1452	NM_014232	6844		NM_014232	ENSG00000220205	VAMP2	NEDHAHM|SYB2|VAMP-2	vesicle associated membrane protein 2	protein-coding
150583	chr21	43178601	43178800	+	0	NA	Intergenic	Intergenic	8464	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
236611	chrX	74382621	74383000	+	0	NA	Intergenic	Intergenic	-38683	NM_006517	6567		NM_006517	ENSG00000147100	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16 member 2	protein-coding
82637	chr16	19070121	19070430	+	0	NA	intron (NM_001370489, intron 1 of 5)	intron (NM_001370489, intron 1 of 5)	1628	NM_001370491	10229		NM_016138	ENSG00000167186	COQ7	CAT5|CLK-1|CLK1|COQ10D8|HMNR9	coenzyme Q7, hydroxylase	protein-coding
106781	chr18	23852551	23852650	+	0	NA	intron (NM_198129, intron 32 of 74)	intron (NM_198129, intron 32 of 74)	-20420	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
219083	chr8	65836351	65836450	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	5664	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
32545	chr10	103244701	103245080	+	0	NA	promoter-TSS (NM_001143909)	promoter-TSS (NM_001143909)	-997	NM_001143909	729020		NM_001143909	ENSG00000235376	RPEL1	-	ribulose-5-phosphate-3-epimerase like 1	protein-coding
26919	chr10	26470151	26470250	+	0	NA	intron (NM_019043, intron 2 of 14)	MER47A|DNA|TcMar-Tigger	31859	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
77090	chr15	78915051	78915880	+	0	NA	Intergenic	MIRb|SINE|MIR	29581	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
235239	chrX	41441121	41441400	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6083	NM_001378477	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
144286	chr20	34698171	34698330	+	0	NA	Intergenic	Intergenic	-6094	NM_021202	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
105237	chr17	82384451	82384900	+	0	NA	Intergenic	Intergenic	12910	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
167456	chr3	129097851	129098150	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	23804	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
199935	chr6	127900751	127901480	+	0	NA	promoter-TSS (NM_001164685)	promoter-TSS (NM_001164685)	-34	NM_001164685	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
88239	chr16	82298651	82298750	+	0	NA	Intergenic	MIRb|SINE|MIR	-128476	NM_005792	10200		NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
75345	chr15	65421321	65421980	+	0	NA	intron (NM_020962, intron 1 of 19)	intron (NM_020962, intron 1 of 19)	1297	NM_020962	57722		NM_020962	ENSG00000103742	IGDCC4	DDM36|NOPE	immunoglobulin superfamily DCC subclass member 4	protein-coding
56291	chr12	112380221	112380480	+	0	NA	intron (NM_001109662, intron 1 of 75)	AluSz|SINE|Alu	2081	NM_001109662	283450		NM_173813	ENSG00000173064	HECTD4	C12ord51|C12orf51|HEEL|NEDSSCC|POTAGE	HECT domain E3 ubiquitin protein ligase 4	protein-coding
183441	chr5	78983071	78983230	+	0	NA	intron (NM_000046, intron 1 of 7)	AluSx|SINE|Alu	2160	NM_000046	411		NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
198225	chr6	98843151	98843250	+	0	NA	Intergenic	Intergenic	8626	NM_005604	5454		NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
9464	chr1	50451551	50451650	+	0	NA	intron (NM_007051, intron 18 of 18)	intron (NM_007051, intron 18 of 18)	-28157	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
27398	chr10	31328901	31329100	+	0	NA	intron (NM_001323675, intron 1 of 6)	(GT)n|Simple_repeat|Simple_repeat	7340	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
77065	chr15	78883871	78884030	+	0	NA	intron (NM_001265604, intron 3 of 11)	AluSg|SINE|Alu	10961	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
197379	chr6	73486371	73486730	+	0	NA	intron (NM_133645, intron 10 of 12)	AluSq10|SINE|Alu	24813	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
164144	chr3	56757401	56757880	+	0	NA	intron (NM_001289698, intron 3 of 10)	intron (NM_001289698, intron 3 of 10)	18077	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
188809	chr5	158544901	158545100	+	0	NA	Intergenic	Intergenic	-135227	NR_109888	101927697		NR_109888	ENSG00000276778	LINC02227	-	long intergenic non-protein coding RNA 2227	ncRNA
72293	chr15	30993071	30993330	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-1572	NM_017762	54893		NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
179470	chr4	184470501	184471650	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	3475	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
118940	chr19	38790101	38790380	+	0	NA	intron (NM_001042507, intron 2 of 3)	intron (NM_001042507, intron 2 of 3)	1040	NM_001042507	653499		NM_001042507	ENSG00000178934	LGALS7B	GAL7|Gal-7|HKL-14|LGALS7|PI7	galectin 7B	protein-coding
84809	chr16	31073901	31075600	+	0	NA	promoter-TSS (NM_024706)	promoter-TSS (NM_024706)	328	NM_014699	9726		NM_014699	ENSG00000167395	ZNF646	-	zinc finger protein 646	protein-coding
210895	chr7	101175601	101176030	+	0	NA	intron (NM_198571, intron 1 of 3)	AluJr|SINE|Alu	3421	NM_001369695	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
44077	chr11	95674671	95675050	+	0	NA	Intergenic	Intergenic	114922	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
62097	chr13	94708001	94708200	+	0	NA	non-coding (NR_120417, exon 1 of 3)	non-coding (NR_120417, exon 1 of 3)	386	NR_120417	101927248		NR_120417	ENSG00000238230	LINC00391	-	long intergenic non-protein coding RNA 391	ncRNA
80270	chr16	2232001	2233000	+	0	NA	exon (NM_001288778, exon 5 of 12)	exon (NM_001288778, exon 5 of 12)	-3944	NM_001374	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
88988	chr16	87930571	87930830	+	0	NA	intron (NM_001739, intron 1 of 6)	MER102b|DNA|hAT-Charlie	5829	NM_001367225	763		NM_001739	ENSG00000174990	CA5A	CA5|CA5AD|CAV|CAVA|GS1-21A4.1	carbonic anhydrase 5A	protein-coding
186568	chr5	138478771	138479130	+	0	NA	Intergenic	AluY|SINE|Alu	13471	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
140152	chr2	231606601	231607550	+	0	NA	Intergenic	Intergenic	14211	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
64185	chr14	22982101	22982900	+	0	NA	promoter-TSS (NM_032876)	promoter-TSS (NM_032876)	51	NM_001289097	84962		NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
3857	chr1	16952701	16953080	+	0	NA	intron (NM_014675, intron 20 of 36)	intron (NM_014675, intron 20 of 36)	27730	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
183712	chr5	80993971	80994330	+	0	NA	intron (NM_006909, intron 1 of 26)	AluY|SINE|Alu	-33243	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
144764	chr20	36616651	36617200	+	0	NA	intron (NM_175077, intron 5 of 7)	AluSg|SINE|Alu	11146	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
238791	chrX	154380901	154381130	+	0	NA	exon (NM_000117, exon 6 of 6)	exon (NM_000117, exon 6 of 6)	1720	NM_000117	2010		NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
104290	chr17	80861601	80862400	+	0	NA	intron (NM_001163034, intron 13 of 29)	intron (NM_001163034, intron 13 of 29)	-56368	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
154494	chr22	35658701	35658900	+	0	NA	exon (NM_030641, exon 3 of 3)	exon (NM_030641, exon 3 of 3)	10354	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
114414	chr19	12663101	12663700	+	0	NA	exon (NM_000528, exon 6 of 24)	exon (NM_000528, exon 6 of 24)	3342	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
189022	chr5	168851771	168852330	+	0	NA	intron (NM_003062, intron 5 of 35)	intron (NM_003062, intron 5 of 35)	-83795	NR_029632	407001		NR_029632	ENSG00000207739	MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	ncRNA
158962	chr3	10228401	10228930	+	0	NA	intron (NM_001570, intron 10 of 12)	intron (NM_001570, intron 10 of 12)	-19794	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
146466	chr20	49710051	49710480	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	3613	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
199502	chr6	118680501	118681250	+	0	NA	intron (NM_001178035, intron 1 of 13)	AluJb|SINE|Alu	29200	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
102138	chr17	75086521	75086780	+	0	NA	Intergenic	L2b|LINE|L2	-1115	NM_001271765	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
80750	chr16	3152041	3153200	+	0	NA	Intergenic	tRNA-Pro-CCY|tRNA|tRNA	8329	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
151263	chr21	45369821	45370380	+	0	NA	Intergenic	L1ME3G|LINE|L1	-28110	NR_103811	388830		NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
156796	chr22	41914021	41914310	+	0	NA	exon (NM_001353439, exon 1 of 4)	exon (NM_001353439, exon 1 of 4)	909	NM_001353438	440829		NM_001207020	ENSG00000234965	SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
116716	chr19	18449021	18449580	+	0	NA	intron (NM_006532, intron 8 of 11)	intron (NM_006532, intron 8 of 11)	-11167	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
23425	chr1	228401371	228401530	+	0	NA	intron (NM_145214, intron 2 of 5)	intron (NM_145214, intron 2 of 5)	-4341	NR_106800	102465444		NR_106800	ENSG00000284311	MIR6742	hsa-mir-6742	microRNA 6742	ncRNA
238460	chrX	152989221	152989580	+	0	NA	3' UTR (NM_001103151, exon 3 of 3)	3' UTR (NM_001103151, exon 3 of 3)	2813	NM_052926	114824		NM_052926	ENSG00000198883	PNMA5	-	PNMA family member 5	protein-coding
181033	chr5	35883151	35883630	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	26499	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
48082	chr12	7160751	7160850	+	0	NA	Intergenic	L2b|LINE|L2	-27853	NM_001351124	5830		NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
17031	chr1	156068071	156068230	+	0	NA	intron (NM_020387, intron 2 of 4)	intron (NM_020387, intron 2 of 4)	6990	NR_133653	57111		NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
23373	chr1	228168551	228169400	+	0	NA	intron (NM_001010867, intron 1 of 2)	intron (NM_001010867, intron 1 of 2)	3171	NM_001010867	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
39599	chr11	61308951	61309250	+	0	NA	intron (NM_001923, intron 20 of 26)	intron (NM_001923, intron 20 of 26)	-13784	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
47166	chr12	776371	777080	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSc8|SINE|Alu	23802	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
25944	chr10	11402871	11403880	+	0	NA	Intergenic	Intergenic	-58701	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
101691	chr17	68440001	68440400	+	0	NA	intron (NR_135470, intron 4 of 12)	intron (NR_135470, intron 4 of 12)	-15652	NR_030365	693220		NR_030365	ENSG00000207561	MIR635	MIRN635|hsa-mir-635	microRNA 635	ncRNA
109152	chr19	70801	71100	+	0	NA	promoter-TSS (NR_033266)	promoter-TSS (NR_033266)	16	NR_033266	375690		NR_033266	ENSG00000292982	WASH5P	-	WASP family homolog 5, pseudogene	pseudo
132407	chr2	105799951	105800590	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	-51577	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
202409	chr6	157877721	157878400	+	0	NA	intron (NM_016224, intron 4 of 17)	intron (NM_016224, intron 4 of 17)	54814	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
89715	chr16	89413001	89413200	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-17818	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
144663	chr20	36156551	36157400	+	0	NA	intron (NM_012156, intron 1 of 21)	AluSc|SINE|Alu	-1215	NR_147703	100130373		NR_147703		EPB41L1-AS1	-	EPB41L1 antisense RNA 1	ncRNA
19629	chr1	180156251	180156780	+	0	NA	intron (NM_001004128, intron 1 of 12)	intron (NM_001004128, intron 1 of 12)	1646	NM_002826	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
16068	chr1	153352501	153352730	+	0	NA	Intergenic	Intergenic	-3774	NM_020393	57115		NM_020393	ENSG00000163218	PGLYRP4	PGLYRPIbeta|PGRP-Ibeta|PGRPIB|SBBI67	peptidoglycan recognition protein 4	protein-coding
172024	chr4	990821	991080	+	0	NA	intron (NM_022042, intron 2 of 2)	intron (NM_022042, intron 2 of 2)	2454	NM_134425	10861		NM_022042	ENSG00000145217	SLC26A1	CAON|CAON1|EDM4|HYSULF|SAT-1|SAT1	solute carrier family 26 member 1	protein-coding
89674	chr16	89375171	89375330	+	0	NA	intron (NR_045839, intron 2 of 9)	Tigger2b_Pri|DNA|TcMar-Tigger	54798	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
147101	chr20	53874051	53874150	+	0	NA	TTS (NR_002189)	TTS (NR_002189)	1609	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
163893	chr3	52517521	52518200	+	0	NA	intron (NM_015136, intron 44 of 68)	intron (NM_015136, intron 44 of 68)	15997	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
33081	chr10	110895271	110895630	+	0	NA	intron (NM_145341, intron 11 of 12)	L1PA17|LINE|L1	-2640	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
67246	chr14	68976501	68976700	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	2702	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
205807	chr7	24402021	24402280	+	0	NA	Intergenic	Intergenic	117960	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
135809	chr2	170139771	170139930	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-38297	NM_001083615	140469		NM_138995	ENSG00000071909	MYO3B	-	myosin IIIB	protein-coding
12106	chr1	100037571	100038400	+	0	NA	promoter-TSS (NM_033055)	promoter-TSS (NM_033055)	-110	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
99369	chr17	49912051	49912350	+	0	NA	Intergenic	Intergenic	-56990	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
237038	chrX	102951051	102951800	+	0	NA	intron (NR_146589, intron 10 of 11)	intron (NR_146589, intron 10 of 11)	14153	NM_001031834	282808		NM_001031834	ENSG00000102128	RAB40AL	MRXSMP|RAR2|RLGP	RAB40A like	protein-coding
157100	chr22	42633021	42633280	+	0	NA	intron (NM_001129819, intron 2 of 8)	intron (NM_001129819, intron 2 of 8)	7451	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
11502	chr1	90844021	90844480	+	0	NA	intron (NR_147931, intron 1 of 2)	AluSp|SINE|Alu	7388	NR_135038	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
126159	chr2	26329901	26330530	+	0	NA	intron (NM_153835, intron 1 of 11)	L1MD2|LINE|L1	-11113	NM_001145169	165082		NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding
66443	chr14	61538151	61538480	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	31879	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
76537	chr15	75178251	75179200	+	0	NA	Intergenic	CpG	-23157	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
46836	chr11	132095201	132095400	+	0	NA	intron (NR_147852, intron 1 of 7)	intron (NR_147852, intron 1 of 7)	184482	NR_147853	50863		NM_016522	ENSG00000182667	NTM	CEPU-1|HNT|IGLON2|NTRI	neurotrimin	protein-coding
223842	chr9	10071	10600	+	0	NA	Intergenic	(TAACCC)n|Simple_repeat|Simple_repeat	-1652	NR_051986	100287596		NR_051986		DDX11L5	-	DEAD/H-box helicase 11 like 5 (pseudogene)	pseudo
127749	chr2	43638251	43638550	+	0	NA	intron (NM_172069, intron 1 of 29)	intron (NM_172069, intron 1 of 29)	1140	NM_172069	130271		NM_172069	ENSG00000152527	PLEKHH2	PLEKHH1L	pleckstrin homology, MyTH4 and FERM domain containing H2	protein-coding
120321	chr19	43519071	43519980	+	0	NA	intron (NM_001320869, intron 1 of 4)	intron (NM_001320869, intron 1 of 4)	7676	NM_001320867	23474		NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1 persulfide dioxygenase	protein-coding
5495	chr1	25712551	25712650	+	0	NA	intron (NM_001385185, intron 1 of 10)	intron (NM_001385185, intron 1 of 10)	16445	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
200405	chr6	134517321	134517580	+	0	NA	Intergenic	Intergenic	22555	NR_125855	101928304		NR_125855	ENSG00000232310	LINC03002	-	long intergenic non-protein coding RNA 3002	ncRNA
227623	chr9	92796531	92796650	+	0	NA	Intergenic	Intergenic	11497	NR_136301	101929748		NR_136301	ENSG00000288062	LOC101929748	-	uncharacterized LOC101929748	ncRNA
98763	chr17	48111421	48112080	+	0	NA	intron (NM_152244, intron 2 of 7)	intron (NM_152244, intron 2 of 7)	3984	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
91995	chr17	7439101	7439630	+	0	NA	promoter-TSS (NM_004112)	promoter-TSS (NM_004112)	-147	NM_004112	2256		NM_004112	ENSG00000161958	FGF11	FGF-11|FHF-3|FHF3	fibroblast growth factor 11	protein-coding
77320	chr15	82460151	82460590	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-15501	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
58840	chr12	132882771	132883130	+	0	NA	intron (NM_018223, intron 2 of 17)	AluJo|SINE|Alu	4655	NM_001161346	55743		NM_018223	ENSG00000072609	CHFR	RNF116|RNF196	checkpoint with forkhead and ring finger domains	protein-coding
50223	chr12	46226651	46227180	+	0	NA	intron (NM_001278387, intron 6 of 17)	AluSx1|SINE|Alu	39601	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
107272	chr18	44024251	44024350	+	0	NA	Intergenic	L1HS|LINE|L1	507397	NR_110792	101927921		NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
89927	chr16	89725921	89726680	+	0	NA	intron (NR_110122, intron 4 of 10)	AluSp|SINE|Alu	4763	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
45605	chr11	118901521	118902080	+	0	NA	exon (NM_182557, exon 6 of 8)	exon (NM_182557, exon 6 of 8)	8408	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
210722	chr7	100608101	100608780	+	0	NA	TTS (NM_002593)	TTS (NM_002593)	-3722	NM_001040097	64598		NM_023948	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
205586	chr7	21429301	21429500	+	0	NA	TTS (NR_137166)	TTS (NR_137166)	1317	NM_001326543	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
197346	chr6	73447051	73447150	+	0	NA	intron (NM_138441, intron 1 of 4)	L1M5|LINE|L1	5197	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
165917	chr3	107235551	107236100	+	0	NA	intron (NR_028303, intron 1 of 3)	intron (NR_028303, intron 1 of 3)	4813	NR_028303	100302640		NR_028303		LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
231945	chr9	133132051	133132600	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	-1168	NM_001271774	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
172942	chr4	3521121	3521680	+	0	NA	intron (NR_110005, intron 2 of 7)	intron (NR_110005, intron 2 of 7)	10749	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
91960	chr17	7386651	7386750	+	0	NA	intron (NM_003985, intron 8 of 12)	intron (NM_003985, intron 8 of 12)	5611	NM_003985	8711		NM_003985	ENSG00000174292	TNK1	KOS1	tyrosine kinase non receptor 1	protein-coding
116133	chr19	17334401	17335550	+	0	NA	promoter-TSS (NM_020959)	promoter-TSS (NM_020959)	-7	NM_001195422	84705		NM_032620	ENSG00000130299	GTPBP3	COXPD23|GTPBG3|MSS1|MTGP1|THDF1	GTP binding protein 3, mitochondrial	protein-coding
74650	chr15	60899051	60899750	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	217831	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
27028	chr10	26855901	26856530	+	0	NA	intron (NM_001178116, intron 1 of 11)	AluSx|SINE|Alu	4743	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
18414	chr1	161445601	161445950	+	0	NA	Intergenic	CpG	-59682	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
105169	chr17	82267371	82268580	+	0	NA	intron (NM_139062, intron 1 of 9)	intron (NM_139062, intron 1 of 9)	5725	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
62327	chr13	99065351	99065750	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	21144	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
235167	chrX	41175821	41176080	+	0	NA	intron (NM_001039590, intron 21 of 44)	AluSx|SINE|Alu	90505	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
237974	chrX	134079951	134080050	+	0	NA	Intergenic	L1PA5|LINE|L1	89452	NR_029852	574031		NR_029852	ENSG00000284499	MIR363	MIR-363|MIRN363|hsa-mir-363	microRNA 363	ncRNA
28499	chr10	50071101	50071300	+	0	NA	intron (NM_001291398, intron 3 of 29)	intron (NM_001291398, intron 3 of 29)	3246	NM_001005751	387680		NM_018232	ENSG00000099290	WASHC2A	FAM21A|FAM21B|bA56A21.1|bA98I6.1	WASH complex subunit 2A	protein-coding
5005	chr1	24414651	24414750	+	0	NA	promoter-TSS (NM_001199014)	promoter-TSS (NM_001199014)	397	NM_001199012	90529		NM_178122	ENSG00000001460	STPG1	C1orf201|MAPO2	sperm tail PG-rich repeat containing 1	protein-coding
49220	chr12	18872801	18873200	+	0	NA	Intergenic	Intergenic	134881	NM_033328	93661		NM_033328	ENSG00000177938	CAPZA3	CAPPA3|Gsg3|HEL-S-86	capping actin protein of muscle Z-line subunit alpha 3	protein-coding
214430	chr7	149865351	149866380	+	0	NA	3' UTR (NM_001099220, exon 8 of 8)	3' UTR (NM_001099220, exon 8 of 8)	-7099	NM_001367792	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
186596	chr5	138509571	138509730	+	0	NA	intron (NM_001291974, intron 9 of 10)	AluSq2|SINE|Alu	32061	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
162627	chr3	48738721	48739100	+	0	NA	Intergenic	Intergenic	-21632	NM_001190316	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
177997	chr4	139293821	139294080	+	0	NA	intron (NM_001184987, intron 3 of 4)	AluYj4|SINE|Alu	7260	NM_001184991	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
115206	chr19	14477671	14477830	+	0	NA	TTS (NM_005716)	TTS (NM_005716)	-2396	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
51173	chr12	50216121	50216380	+	0	NA	intron (NM_001113547, intron 1 of 7)	AluSp|SINE|Alu	6408	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
85568	chr16	53456071	53457200	+	0	NA	intron (NM_001323609, intron 8 of 20)	L2a|LINE|L2	21016	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
130708	chr2	86719471	86721400	+	0	NA	5' UTR (NM_022780, exon 1 of 9)	5' UTR (NM_022780, exon 1 of 9)	144	NM_022780	64795		NM_022780	ENSG00000153561	RMND5A	CTLH|GID2|GID2A|RMD5|p44CTLH	required for meiotic nuclear division 5 homolog A	protein-coding
227724	chr9	93051551	93051650	+	0	NA	Intergenic	AluY|SINE|Alu	-7088	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
65844	chr14	54948321	54948580	+	0	NA	intron (NM_007086, intron 24 of 25)	L1PA5|LINE|L1	-45624	NM_001024071	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
122576	chr19	49682071	49682680	+	0	NA	TTS (NR_049811)	TTS (NR_049811)	258	NR_049811	100847074		NR_049811	ENSG00000274306	MIR5088	mir-5088	microRNA 5088	ncRNA
195980	chr6	41972171	41972800	+	0	NA	intron (NM_001136017, intron 1 of 4)	MIRb|SINE|MIR	-30637	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
81731	chr16	11310901	11312130	+	0	NA	Intergenic	LOR1b|LTR|ERV1	-4988	NR_031678	100313773		NR_031678	ENSG00000221801	MIR548H2	MIR548H-2|MIRN548H2	microRNA 548h-2	ncRNA
70218	chr14	100638171	100638330	+	0	NA	Intergenic	MIRb|SINE|MIR	-19018	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
85739	chr16	56679921	56680250	+	0	NA	Intergenic	MIR|SINE|MIR	-2385	NM_005952	4501		NM_005952	ENSG00000187193	MT1X	MT-1l|MT1	metallothionein 1X	protein-coding
113592	chr19	10278771	10279400	+	0	NA	intron (NM_000201, intron 2 of 6)	intron (NM_000201, intron 2 of 6)	-7870	NM_001039132	3386		NM_001544	ENSG00000105371	ICAM4	CD242|LW	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	protein-coding
153512	chr22	26501501	26501900	+	0	NA	intron (NM_001346862, intron 6 of 12)	intron (NM_001346862, intron 6 of 12)	10773	NM_012143	24144		NM_012143	ENSG00000100109	TFIP11	NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6	tuftelin interacting protein 11	protein-coding
2379	chr1	9417501	9418180	+	0	NA	Intergenic	Intergenic	11076	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
3555	chr1	16153221	16153480	+	0	NA	intron (NM_004431, intron 1 of 16)	intron (NM_004431, intron 1 of 16)	2719	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
131195	chr2	95029271	95029630	+	0	NA	intron (NM_022440, intron 1 of 1)	L1ME3Cz|LINE|L1	3742	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
146498	chr20	49889871	49890380	+	0	NA	non-coding (NR_048538, exon 14 of 14)	non-coding (NR_048538, exon 14 of 14)	23614	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
189944	chr5	177400221	177400800	+	0	NA	exon (NM_001029886, exon 1 of 1)	exon (NM_001029886, exon 1 of 1)	151	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
156768	chr22	41858951	41859780	+	0	NA	intron (NR_103834, intron 1 of 21)	Tigger9b|DNA|TcMar-Tigger	-24700	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
181339	chr5	40408151	40408450	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-271615	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
7383	chr1	32891021	32891730	+	0	NA	intron (NM_002143, intron 2 of 3)	L2b|LINE|L2	4884	NM_002143	3208		NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
7235	chr1	32335901	32336800	+	0	NA	promoter-TSS (NR_052852)	promoter-TSS (NR_052852)	-117	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
2947	chr1	11898051	11898350	+	0	NA	Intergenic	Intergenic	-9954	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
30428	chr10	79045851	79046150	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	21448	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
6473	chr1	28328471	28330080	+	0	NA	intron (NM_017638, intron 1 of 2).2	intron (NM_017638, intron 1 of 2).2	235	NM_017638	54797		NM_017638	ENSG00000130772	MED18	SRB5|p28b	mediator complex subunit 18	protein-coding
202224	chr6	156808071	156808430	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-28519	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
210526	chr7	100228951	100229830	+	0	NA	intron (NR_166147, intron 2 of 4)	intron (NR_166147, intron 2 of 4)	10142	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
231671	chr9	131677401	131678060	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-26327	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
205782	chr7	23595121	23595630	+	0	NA	Intergenic	MER65A|LTR|ERV1	-2007	NM_138771	90693		NM_138771	ENSG00000169193	CCDC126	-	coiled-coil domain containing 126	protein-coding
166813	chr3	122661701	122662050	+	0	NA	Intergenic	Intergenic	-18964	NM_017554	54625		NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	poly(ADP-ribose) polymerase family member 14	protein-coding
19321	chr1	173420071	173420700	+	0	NA	intron (NR_125960, intron 1 of 1)	LTR78|LTR|ERV1	40977	NR_125960	101928673		NR_125960	ENSG00000203739	PRDX6-AS1	-	PRDX6 antisense RNA 1	ncRNA
211623	chr7	106031401	106031600	+	0	NA	intron (NM_001301161, intron 17 of 17)	intron (NM_001301161, intron 17 of 17)	68236	NM_152750	222256		NM_152750	ENSG00000128536	CDHR3	CDH28	cadherin related family member 3	protein-coding
225663	chr9	36457751	36458800	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-57077	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
94604	chr17	29744071	29744230	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	17282	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
237127	chrX	106610401	106610730	+	0	NA	Intergenic	L2a|LINE|L2	-1365	NM_001184782	55086		NM_018015	ENSG00000147231	RADX	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein-coding
219632	chr8	80146901	80147300	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	24021	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
107129	chr18	35106471	35107630	+	0	NA	intron (NR_046177, intron 4 of 6)	Eulor9B|DNA|DNA	65637	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
87006	chr16	68243071	68243500	+	0	NA	Intergenic	Intergenic	-2088	NM_001363551	23659		NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	phospholipase A2 group XV	protein-coding
77579	chr15	85024571	85025130	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	42876	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
215446	chr7	157851601	157852000	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	-2785	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
149245	chr21	25708351	25708700	+	0	NA	intron (NM_021219, intron 7 of 9)	AluJo|SINE|Alu	-26447	NM_002040	2551		NM_002040	ENSG00000154727	GABPA	E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07	GA binding protein transcription factor subunit alpha	protein-coding
99661	chr17	50717921	50718500	+	0	NA	Intergenic	AluJb|SINE|Alu	-1355	NM_006107	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
76948	chr15	78102621	78102930	+	0	NA	intron (NM_001101404, intron 5 of 5)	intron (NM_001101404, intron 5 of 5)	10190	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
182157	chr5	56542601	56542930	+	0	NA	intron (NR_161255, intron 2 of 5)	L1MB7|LINE|L1	-60996	NR_104664	102467147		NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
41456	chr11	66111671	66112580	+	0	NA	intron (NM_018026, intron 1 of 23)	L2a|LINE|L2	41853	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
9359	chr1	47183201	47183650	+	0	NA	TTS (NM_005764)	TTS (NM_005764)	4175	NR_047498	100874253		NR_047498	ENSG00000224805	LINC00853	PDZK1IP1-AS1|ncRNA-a4	long intergenic non-protein coding RNA 853	ncRNA
132922	chr2	111425851	111426800	+	0	NA	intron (NR_136161, intron 1 of 5)	Tigger3a|DNA|TcMar-Tigger	68836	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
32810	chr10	109918471	109918630	+	0	NA	intron (NM_020383, intron 1 of 20)	AluY|SINE|Alu	4696	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
225764	chr9	37309071	37309230	+	0	NA	intron (NM_001289119, intron 5 of 8)	intron (NM_001289119, intron 5 of 8)	-113546	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
212658	chr7	129535101	129535300	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	32669	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
60159	chr13	40096221	40096600	+	0	NA	Intergenic	Intergenic	-85399	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
186792	chr5	139368301	139368780	+	0	NA	intron (NM_152685, intron 14 of 14)	AluSc8|SINE|Alu	14757	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
211724	chr7	106947271	106947500	+	0	NA	Intergenic	Intergenic	81906	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
169867	chr3	177228001	177228200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-30618	NM_001374330	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
129309	chr2	68679471	68679930	+	0	NA	Intergenic	L1PA3|LINE|L1	36121	NM_138964	10887		NM_138964	ENSG00000169618	PROKR1	GPR73|GPR73a|PK-R1|PKR1|ZAQ	prokineticin receptor 1	protein-coding
138258	chr2	203283051	203283350	+	0	NA	intron (NR_163981, intron 8 of 11)	intron (NR_163981, intron 8 of 11)	43859	NM_001371698	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
28563	chr10	50653221	50653680	+	0	NA	Intergenic	Intergenic	28499	NR_126411	104355295		NR_126411		SGMS1-AS1	-	SGMS1 antisense RNA 1	ncRNA
36120	chr11	3097801	3098000	+	0	NA	intron (NM_145638, intron 13 of 20)	AluSq2|SINE|Alu	-40477	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
82838	chr16	21504371	21504730	+	0	NA	Intergenic	AluJo|SINE|Alu	1585	NR_037451	100500917		NR_037451	ENSG00000265462	MIR3680-1	MIR3680|hsa-mir-3680-1	microRNA 3680-1	ncRNA
83358	chr16	25063101	25063500	+	0	NA	Intergenic	Intergenic	-3587	NR_135196	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
234270	chrX	13379071	13379250	+	0	NA	Intergenic	CpG	43919	NR_045260	100133123		NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA
52773	chr12	56681521	56682080	+	0	NA	intron (NM_001282601, intron 1 of 6)	AluSx|SINE|Alu	6484	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
108771	chr18	77137251	77137550	+	0	NA	Intergenic	Intergenic	-4617	NM_001025101	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
122772	chr19	50173121	50173380	+	0	NA	Intergenic	Intergenic	-9969	NM_001321449	126123		NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
113796	chr19	10564301	10564500	+	0	NA	intron (NM_023008, intron 3 of 18)	AluSp|SINE|Alu	1610	NM_023008	65095		NM_023008	ENSG00000129347	KRI1	-	KRI1 homolog	protein-coding
21280	chr1	204411101	204413650	+	0	NA	promoter-TSS (NM_032833)	promoter-TSS (NM_032833)	-558	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
153716	chr22	29291251	29291950	+	0	NA	TTS (NM_001163287)	TTS (NM_001163287)	-15423	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
42654	chr11	72446871	72447500	+	0	NA	Intergenic	Intergenic	-12501	NM_001258394	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
106302	chr18	12865201	12865600	+	0	NA	intron (NM_080422, intron 1 of 9)	AluJr|SINE|Alu	18837	NM_002828	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
212908	chr7	130899651	130900950	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	13010	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
3336	chr1	15430071	15430230	+	0	NA	3' UTR (NM_024329, exon 4 of 4)	3' UTR (NM_024329, exon 4 of 4)	-8293	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
100245	chr17	59364251	59364680	+	0	NA	intron (NM_001005404, intron 2 of 4)	MIR3|SINE|MIR	-1618	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
102027	chr17	74854771	74855750	+	0	NA	intron (NM_001278553, intron 1 of 11)	GA-rich|Low_complexity|Low_complexity	4624	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
92019	chr17	7469401	7469600	+	0	NA	intron (NM_020899, intron 1 of 3)	AluSx1|SINE|Alu	10131	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
232029	chr9	133379701	133379900	+	0	NA	intron (NM_153710, intron 2 of 17)	intron (NM_153710, intron 2 of 17)	-1851	NM_001280788	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
135612	chr2	168156751	168156850	+	0	NA	intron (NM_013233, intron 5 of 17)	intron (NM_013233, intron 5 of 17)	90795	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
188966	chr5	163439101	163439330	+	0	NA	intron (NM_001364022, intron 1 of 5)	intron (NM_001364022, intron 1 of 5)	1620	NM_199246	900		NM_004060	ENSG00000113328	CCNG1	CCNG	cyclin G1	protein-coding
82131	chr16	14725501	14726150	+	0	NA	intron (NM_001277324, intron 7 of 7)	intron (NM_001277324, intron 7 of 7)	14136	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
197891	chr6	89339401	89339800	+	0	NA	intron (NM_016021, intron 3 of 7)	GA-rich|Low_complexity|Low_complexity	13122	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
159026	chr3	10783471	10783630	+	0	NA	Intergenic	Intergenic	-19341	NR_027102	285370		NR_027102	ENSG00000226567	LINC00606	-	long intergenic non-protein coding RNA 606	ncRNA
76771	chr15	76997791	76998180	+	0	NA	intron (NR_135552, intron 1 of 11)	AluSz|SINE|Alu	2859	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
187059	chr5	140111521	140112230	+	0	NA	Intergenic	Intergenic	-2234	NM_005859	5813		NM_005859	ENSG00000185129	PURA	MRD31|NEDRIHF|PUR-ALPHA|PUR1|PURALPHA	purine rich element binding protein A	protein-coding
177979	chr4	139088021	139088480	+	0	NA	intron (NM_001371324, intron 5 of 10)	AluSx|SINE|Alu	-3836	NM_001276457	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
143685	chr20	32111221	32111480	+	0	NA	intron (NM_001363731, intron 1 of 17)	intron (NM_001363731, intron 1 of 17)	1622	NM_001363731	9777		NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
5239	chr1	25008321	25008580	+	0	NA	Intergenic	Intergenic	-15053	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
234543	chrX	19695901	19696500	+	0	NA	intron (NM_001353892, intron 4 of 17)	Charlie4a|DNA|hAT-Charlie	-25201	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
65130	chr14	44965521	44966100	+	0	NA	intron (NR_131765, intron 1 of 19)	L1MC4|LINE|L1	3620	NM_001308120	23116		NM_015091	ENSG00000198718	TOGARAM1	FAM179B|JBTS37|KIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding
207144	chr7	43385221	43385300	+	0	NA	intron (NM_001287059, intron 5 of 27)	(CCCCT)n|Simple_repeat|Simple_repeat	137282	NR_038276	100506895		NR_038276	ENSG00000231638	LUARIS	SCAT6|lncRNA32	lncRNA upregulator of antiviral response interferon signaling	ncRNA
29338	chr10	69413201	69414080	+	0	NA	intron (NM_001057, intron 2 of 4)	intron (NM_001057, intron 2 of 4)	3278	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
8727	chr1	42680251	42680550	+	0	NA	Intergenic	Intergenic	-2018	NM_004559	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
83196	chr16	23507621	23508080	+	0	NA	intron (NM_015044, intron 1 of 16)	AluSx3|SINE|Alu	2644	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
183516	chr5	79615151	79615450	+	0	NA	intron (NM_173797, intron 2 of 15)	intron (NM_173797, intron 2 of 15)	2859	NM_001349554	167153		NM_173797	ENSG00000164329	TENT2	APD4|GLD2|PAPD4|TUT2	terminal nucleotidyltransferase 2	protein-coding
129003	chr2	64830221	64830550	+	0	NA	Intergenic	Intergenic	33246	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
162452	chr3	48470921	48471180	+	0	NA	intron (NM_016479, intron 3 of 5)	AluJr|SINE|Alu	2108	NM_001272082	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
206754	chr7	36688971	36689130	+	0	NA	intron (NM_001177506, intron 1 of 21)	intron (NM_001177506, intron 1 of 21)	35444	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
183831	chr5	86616051	86616380	+	0	NA	Intergenic	AluY|SINE|Alu	-1726	NM_001867	1350		NM_001867	ENSG00000127184	COX7C	-	cytochrome c oxidase subunit 7C	protein-coding
199706	chr6	125275821	125276080	+	0	NA	3' UTR (NM_016063, exon 6 of 6)	3' UTR (NM_016063, exon 6 of 6)	26017	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
187353	chr5	141694671	141694830	+	0	NA	Intergenic	Intergenic	-12520	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
204456	chr7	4631601	4631800	+	0	NA	Intergenic	Intergenic	-50595	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
201175	chr6	142952271	142952950	+	0	NA	Intergenic	Intergenic	-7434	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
39463	chr11	60980901	60981200	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	9370	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
156592	chr22	41534351	41535080	+	0	NA	intron (NM_138338, intron 3 of 6)	AluSq2|SINE|Alu	9755	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
116512	chr19	18156921	18157800	+	0	NA	intron (NR_162071, intron 2 of 14)	intron (NR_162071, intron 2 of 14)	4197	NR_162071	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
113768	chr19	10520571	10521280	+	0	NA	Intergenic	Intergenic	-2960	NM_001166215	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
232247	chr9	134395601	134396600	+	0	NA	intron (NM_001291920, intron 1 of 9)	MIRb|SINE|MIR	-10460	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
230025	chr9	127215771	127215930	+	0	NA	intron (NM_001366400, intron 18 of 18)	intron (NM_001366400, intron 18 of 18)	-47812	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
212371	chr7	127782951	127783250	+	0	NA	intron (NM_014390, intron 10 of 23)	intron (NM_014390, intron 10 of 23)	130906	NM_014390	27044		NM_014390	ENSG00000197157	SND1	TDRD11|TSN|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
79030	chr16	68021	68680	+	0	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	4281	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
143418	chr20	29740721	29740980	+	0	NA	Intergenic	CpG	-139534	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
102249	chr17	75263771	75264350	+	0	NA	intron (NM_015971, intron 4 of 4)	AluSx|SINE|Alu	-1697	NM_001172704	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
7009	chr1	31903401	31903930	+	0	NA	Intergenic	AluSz6|SINE|Alu	34153	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
14908	chr1	147173971	147174130	+	0	NA	intron (NM_001348451, intron 1 of 23)	L3|LINE|CR1	1303	NM_001348451	9557		NM_004284	ENSG00000131778	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1 like	protein-coding
232323	chr9	134851151	134851450	+	0	NA	promoter-TSS (NR_037460)	promoter-TSS (NR_037460)	-493	NR_039696	100616212		NR_039696	ENSG00000266514	MIR3689F	mir-3689f	microRNA 3689f	ncRNA
96897	chr17	42122301	42122730	+	0	NA	promoter-TSS (NM_033194)	promoter-TSS (NM_033194)	-289	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
188998	chr5	168269221	168269580	+	0	NA	Intergenic	Intergenic	-22245	NM_001161662	23286		NM_015238	ENSG00000113645	WWC1	HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168	WW and C2 domain containing 1	protein-coding
179335	chr4	182914171	182914880	+	0	NA	intron (NM_001012732, intron 3 of 5)	intron (NM_001012732, intron 3 of 5)	2728	NM_001351747	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
118647	chr19	37300071	37300900	+	0	NA	Intergenic	SST1|Satellite|centr	-12352	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
18889	chr1	168228501	168228700	+	0	NA	intron (NM_199344, intron 1 of 7)	intron (NM_199344, intron 1 of 7)	2596	NM_199344	375035		NM_199344	ENSG00000213064	SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
125537	chr2	15038121	15038830	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	405758	NM_001369364	151354		NM_145175	ENSG00000162981	LRATD1	FAM84A|NSE1|PP11517	LRAT domain containing 1	protein-coding
237292	chrX	115347371	115347800	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	57870	NM_001318840	51213		NM_016383	ENSG00000102021	LUZP4	CT-28|CT-8|CT28|HOM-TES-85	leucine zipper protein 4	protein-coding
141154	chr2	239253651	239253950	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-51662	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
206653	chr7	36209101	36209700	+	0	NA	intron (NM_030636, intron 2 of 7)	MER117|DNA|hAT-Charlie	56146	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
41305	chr11	65877351	65877700	+	0	NA	Intergenic	Intergenic	-2312	NM_001335	1521		NM_001335	ENSG00000172543	CTSW	LYPN	cathepsin W	protein-coding
132044	chr2	101009171	101009400	+	0	NA	intron (NM_001330348, intron 19 of 19)	AluY|SINE|Alu	6996	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
58134	chr12	124902321	124902800	+	0	NA	Intergenic	Intergenic	12090	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
59268	chr13	24187151	24187930	+	0	NA	intron (NM_153023, intron 1 of 11)	Tigger1|DNA|TcMar-Tigger	25124	NR_031753	100313842		NR_031753	ENSG00000252695	MIR2276	-	microRNA 2276	ncRNA
43853	chr11	88132251	88132350	+	0	NA	intron (NM_022337, intron 2 of 2)	MLT1J|LTR|ERVL-MaLR	43143	NM_022337	23682		NM_022337	ENSG00000123892	RAB38	NY-MEL-1|rrGTPbp	RAB38, member RAS oncogene family	protein-coding
42333	chr11	68491151	68491750	+	0	NA	intron (NM_001352362, intron 2 of 24)	AluJo|SINE|Alu	30698	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
15920	chr1	151719051	151719350	+	0	NA	Intergenic	Intergenic	-2322	NM_001144956	284485		NM_001144956	ENSG00000178796	RIIAD1	C1orf230|NCRNA00166	regulatory subunit of type II PKA R-subunit domain containing 1	protein-coding
54690	chr12	93415771	93417700	+	0	NA	intron (NM_003348, intron 1 of 3)	FLAM_C|SINE|Alu	25212	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
81577	chr16	9160171	9160350	+	0	NA	Intergenic	Intergenic	68616	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
161091	chr3	38140621	38141350	+	0	NA	intron (NR_164663, intron 4 of 4)	(TG)n|Simple_repeat|Simple_repeat	1234	NR_164663	4615		NM_002468	ENSG00000172936	MYD88	IMD68|MYD88D|WM1	MYD88 innate immune signal transduction adaptor	protein-coding
231358	chr9	130578821	130580700	+	0	NA	promoter-TSS (NR_027440)	promoter-TSS (NR_027440)	183	NM_003934	8939		NM_003934	ENSG00000107164	FUBP3	FBP3	far upstream element binding protein 3	protein-coding
34227	chr10	129971451	129971900	+	0	NA	Intergenic	CpG-3521	-7401	NM_001375390	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
153133	chr22	23752321	23752730	+	0	NA	TTS (NM_013378)	TTS (NM_013378)	-1413	NM_021916	7621		NM_021916	ENSG00000187792	ZNF70	Cos17	zinc finger protein 70	protein-coding
206903	chr7	37915651	37915950	+	0	NA	intron (NM_003014, intron 1 of 5)	intron (NM_003014, intron 1 of 5)	1017	NM_003014	6424		NM_003014	ENSG00000106483	SFRP4	FRP-4|FRPHE|FRZB-2|PYL|sFRP-4	secreted frizzled related protein 4	protein-coding
68221	chr14	76923501	76923900	+	0	NA	Intergenic	Intergenic	-35938	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
111749	chr19	4366001	4366650	+	0	NA	intron (NM_001199944, intron 3 of 9)	intron (NM_001199944, intron 3 of 9)	22763	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
10008	chr1	55202421	55202680	+	0	NA	intron (NM_015306, intron 1 of 67)	AluSx1|SINE|Alu	12814	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
107994	chr18	58675101	58675500	+	0	NA	intron (NM_173844, intron 1 of 15)	intron (NM_173844, intron 1 of 15)	-3427	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
169438	chr3	163237221	163237630	+	0	NA	intron (NR_033945, intron 2 of 6)	L1HS|LINE|L1	65876	NR_033945	647107		NR_033945	ENSG00000241369	LINC01192	CT64	long intergenic non-protein coding RNA 1192	ncRNA
7499	chr1	33306601	33307000	+	0	NA	TTS (NM_001080438)	TTS (NM_001080438)	14298	NM_001080438	127550		NM_001080438	ENSG00000184389	A3GALT2	A3GALT2P|IGB3S|IGBS3S	alpha 1,3-galactosyltransferase 2	protein-coding
11706	chr1	91862701	91862900	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	23351	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
146775	chr20	50910421	50911080	+	0	NA	promoter-TSS (NM_001282532)	promoter-TSS (NM_001282532)	-959	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
54665	chr12	93381621	93382080	+	0	NA	intron (NM_001301023, intron 1 of 4)	intron (NM_001301023, intron 1 of 4)	3272	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
53815	chr12	69275171	69276600	+	0	NA	Intergenic	Intergenic	-2667	NR_031692	100302182		NR_031692	ENSG00000283476	MIR1279	MIRN1279|hsa-mir-1279	microRNA 1279	ncRNA
74417	chr15	59044371	59044530	+	0	NA	intron (NM_017610, intron 2 of 13)	intron (NM_017610, intron 2 of 13)	56304	NM_001270530	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
35002	chr11	531571	532530	+	0	NA	TTS (NM_005343)	TTS (NM_005343)	3517	NM_176795	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
196209	chr6	42773101	42773500	+	0	NA	intron (NM_001318819, intron 1 of 13)	AluSx1|SINE|Alu	-10196	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
157157	chr22	42868851	42869350	+	0	NA	TTS (NM_001184971)	TTS (NM_001184971)	-11827	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
125316	chr2	10689271	10690800	+	0	NA	promoter-TSS (NM_001261394)	promoter-TSS (NM_001261394)	25	NR_144555	106479524		NR_144555	ENSG00000243819	RN7SL832P	-	RNA, 7SL, cytoplasmic 832, pseudogene	pseudo
67074	chr14	68087501	68087700	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	264008	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
205850	chr7	24921021	24922000	+	0	NA	intron (NM_015550, intron 1 of 22)	Tigger16b|DNA|TcMar-Tigger	-28889	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
36731	chr11	9249621	9251030	+	0	NA	intron (NM_001243254, intron 1 of 22)	intron (NM_001243254, intron 1 of 22)	15001	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
156747	chr22	41828051	41828350	+	0	NA	non-coding (NR_157279, exon 2 of 2)	non-coding (NR_157279, exon 2 of 2)	-4905	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
20249	chr1	193458601	193459100	+	0	NA	Intergenic	Intergenic	154105	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
56766	chr12	120161151	120161450	+	0	NA	intron (NM_006836, intron 22 of 57)	intron (NM_006836, intron 22 of 57)	-5801	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
163071	chr3	49954421	49955150	+	0	NA	intron (NR_146071, intron 1 of 15)	AluY|SINE|Alu	14635	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
174672	chr4	41866121	41866380	+	0	NA	Intergenic	Intergenic	16361	NR_104143	101927074		NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA
124590	chr2	860371	860530	+	0	NA	intron (NR_033880, intron 1 of 3)	intron (NR_033880, intron 1 of 3)	7976	NR_111963	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
6580	chr1	28754321	28754700	+	0	NA	intron (NM_016258, intron 4 of 4)	AluSx1|SINE|Alu	17570	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
103945	chr17	79850071	79850230	+	0	NA	Intergenic	Intergenic	-10710	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
82720	chr16	20904201	20904930	+	0	NA	intron (NR_161432, intron 2 of 3)	intron (NR_161432, intron 2 of 3)	3303	NR_161432	57149		NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
66484	chr14	61656021	61656600	+	0	NA	Intergenic	Intergenic	-39203	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
132450	chr2	105855721	105858180	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	5103	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
50502	chr12	47807651	47809530	+	0	NA	intron (NR_160436, intron 1 of 25)	intron (NR_160436, intron 1 of 25)	11313	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
186825	chr5	139400571	139400730	+	0	NA	intron (NM_194296, intron 4 of 5)	intron (NM_194296, intron 4 of 5)	3439	NM_194296	202051		NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
223432	chr8	143957821	143958750	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	-4451	NM_201379	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
192193	chr6	17695871	17696800	+	0	NA	intron (NM_001278209, intron 1 of 22)	intron (NM_001278209, intron 1 of 22)	-9795	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
135998	chr2	172288551	172288850	+	0	NA	Intergenic	Intergenic	-138636	NM_001316306	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
13589	chr1	116325401	116326600	+	0	NA	Intergenic	L2a|LINE|L2	-47244	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
63963	chr14	22124871	22125030	+	0	NA	Intergenic	Intergenic	307803	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
21466	chr1	205590721	205590980	+	0	NA	intron (NM_181644, intron 6 of 9)	intron (NM_181644, intron 6 of 9)	-21545	NR_152721	284578		NR_027086		MFSD4A-AS1	-	MFSD4A antisense RNA 1	ncRNA
70142	chr14	100282551	100282650	+	0	NA	3' UTR (NM_003403, exon 5 of 5)	3' UTR (NM_003403, exon 5 of 5)	5243	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
229161	chr9	114499471	114500130	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	3415	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
235148	chrX	41106301	41106880	+	0	NA	intron (NM_001039590, intron 1 of 44)	AluSx1|SINE|Alu	21145	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
97911	chr17	45132031	45133630	+	0	NA	promoter-TSS (NM_133373)	promoter-TSS (NM_133373)	211	NM_001378112	79777		NM_024722	ENSG00000181513	ACBD4	HMFT0700	acyl-CoA binding domain containing 4	protein-coding
152059	chr22	19717421	19718450	+	0	NA	promoter-TSS (NM_001009939)	promoter-TSS (NM_001009939)	-508	NM_001009939	5413		NM_002688	ENSG00000184702	SEPTIN5	CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5|Septin-5	septin 5	protein-coding
183337	chr5	76737121	76737850	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	21359	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
203195	chr6	167422271	167422630	+	0	NA	Intergenic	CpG	-37940	NR_163194	6953		NM_004610	ENSG00000290751	TCP10L3	TCP10|TCP10A	t-complex 10 like 3 (pseudogene)	pseudo
8775	chr1	42777901	42778300	+	0	NA	non-coding (NR_040733, exon 4 of 4)	non-coding (NR_040733, exon 4 of 4)	6795	NR_133055	105378683		NR_133055		TMEM269-DT	C1orf50-AS1	TMEM269 divergent transcript	ncRNA
239056	chrY	7282871	7283730	+	0	NA	intron (NR_028062, intron 1 of 7)	intron (NR_028062, intron 1 of 7)	9328	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
19091	chr1	171251351	171251950	+	0	NA	intron (NM_001282694, intron 1 of 7)	LTR22B2|LTR|ERVK	3156	NM_001282693	2326		NM_002021	ENSG00000010932	FMO1	-	flavin containing dimethylaniline monoxygenase 1	protein-coding
48553	chr12	10235771	10236530	+	0	NA	Intergenic	Intergenic	-2811	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
215479	chr7	158337351	158338050	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	195113	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
37539	chr11	18671951	18673000	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26304	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
190818	chr6	1434171	1434350	+	0	NA	Intergenic	L1PA3|LINE|L1	-43849	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
145344	chr20	41139901	41140500	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-2200	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
22664	chr1	223776001	223777080	+	0	NA	TTS (NM_001146068)	TTS (NM_001146068)	64001	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
37768	chr11	32142251	32142700	+	0	NA	Intergenic	Intergenic	1437	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
58515	chr12	132185301	132186400	+	0	NA	TTS (NR_146452)	TTS (NR_146452)	3845	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
91462	chr17	4829851	4830150	+	0	NA	Intergenic	AluSx|SINE|Alu	-3340	NM_015716	50488		NM_015716	ENSG00000141503	MINK1	B55|MAP4K6|MEKKK 6|MINK|YSK2|ZC3	misshapen like kinase 1	protein-coding
25983	chr10	11863351	11864300	+	0	NA	intron (NR_038222, intron 3 of 5)	intron (NR_038222, intron 3 of 5)	30885	NR_038222	219731		NR_038222	ENSG00000225778	PROSER2-AS1	-	PROSER2 antisense RNA 1	ncRNA
212877	chr7	130871971	130872230	+	0	NA	Intergenic	AluJo|SINE|Alu	4710	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
162920	chr3	49421901	49422700	+	0	NA	TTS (NM_032316)	TTS (NM_032316)	173	NM_001164710	275		NM_000481	ENSG00000145020	AMT	GCE|GCE2|GCST|GCVT|NKH	aminomethyltransferase	protein-coding
99879	chr17	56653851	56654180	+	0	NA	Intergenic	Intergenic	60316	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
127572	chr2	42638851	42639350	+	0	NA	intron (NM_001282755, intron 5 of 17)	AluSx|SINE|Alu	70468	NM_001330443	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
214375	chr7	149719121	149719700	+	0	NA	intron (NM_032534, intron 1 of 16)	intron (NM_032534, intron 1 of 16)	4399	NM_032534	84626		NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
177690	chr4	121823501	121824780	+	0	NA	promoter-TSS (NM_001237)	promoter-TSS (NM_001237)	-257	NM_001237	890		NM_001237	ENSG00000145386	CCNA2	CCN1|CCNA	cyclin A2	protein-coding
52253	chr12	54418051	54418500	+	0	NA	intron (NM_002205, intron 1 of 29)	intron (NM_002205, intron 1 of 29)	991	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
17945	chr1	160342451	160344200	+	0	NA	promoter-TSS (NM_004371)	promoter-TSS (NM_004371)	-58	NM_001290186	23385		NM_015331	ENSG00000162736	NCSTN	ATAG1874	nicastrin	protein-coding
1105	chr1	2046471	2047080	+	0	NA	Intergenic	Intergenic	3295	NR_135509	105378591		NR_135509	ENSG00000226969	PRKCZ-DT	-	PRKCZ divergent transcript	ncRNA
10173	chr1	61140771	61140980	+	0	NA	intron (NM_001145512, intron 3 of 11)	L3|LINE|CR1	58314	NM_001134673	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
150055	chr21	37384871	37385750	+	0	NA	intron (NM_001347723, intron 1 of 10)	MLT1F2|LTR|ERVL-MaLR	17753	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
214840	chr7	151275901	151277780	+	0	NA	promoter-TSS (NM_001003802)	promoter-TSS (NM_001003802)	-106	NM_001003802	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
195687	chr6	38634351	38635730	+	0	NA	intron (NM_052893, intron 1 of 11)	MER5A|DNA|hAT-Charlie	4889	NM_052893	114781		NM_052893	ENSG00000183826	BTBD9	dJ322I12.1	BTB domain containing 9	protein-coding
152353	chr22	20441001	20441200	+	0	NA	TTS (NM_032775)	TTS (NM_032775)	-3275	NM_182895	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
111776	chr19	4407651	4408380	+	0	NA	intron (NM_005483, intron 2 of 14)	intron (NM_005483, intron 2 of 14)	5375	NM_005483	10036		NM_005483	ENSG00000167670	CHAF1A	CAF-1|CAF1|CAF1B|CAF1P150|P150	chromatin assembly factor 1 subunit A	protein-coding
65883	chr14	55127801	55128000	+	0	NA	Intergenic	Intergenic	-1352	NM_001357678	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
225286	chr9	34482251	34482730	+	0	NA	intron (NM_012144, intron 1 of 19)	LTR12C|LTR|ERV1	23685	NM_012144	27019		NM_012144	ENSG00000122735	DNAI1	CILD1|DIC1|ICS1|PCD|oda6	dynein axonemal intermediate chain 1	protein-coding
169361	chr3	160412651	160412950	+	0	NA	intron (NM_005496, intron 6 of 22)	intron (NM_005496, intron 6 of 22)	8055	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
71645	chr14	106774701	106775300	+	0	NA	Intergenic	Intergenic	75999	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
197397	chr6	73507051	73507450	+	0	NA	3' UTR (NM_001123226, exon 13 of 13)	3' UTR (NM_001123226, exon 13 of 13)	11188	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
90787	chr17	2087521	2088350	+	0	NA	5' UTR (NM_001282326, exon 1 of 7)	5' UTR (NM_001282326, exon 1 of 7)	826	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
42215	chr11	68033151	68033650	+	0	NA	promoter-TSS (NR_039840)	promoter-TSS (NR_039840)	-497	NR_039840	100616403		NR_039840	ENSG00000284435	MIR4691	mir-4691	microRNA 4691	ncRNA
76251	chr15	73999221	73999680	+	0	NA	intron (NM_033238, intron 2 of 8)	intron (NM_033238, intron 2 of 8)	4734	NM_033244	5371		NM_002675	ENSG00000140464	PML	MYL|PP8675|RNF71|TRIM19	PML nuclear body scaffold	protein-coding
9889	chr1	54356551	54357650	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	49294	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
60357	chr13	40895521	40895900	+	0	NA	intron (NR_038259, intron 1 of 5)	intron (NR_038259, intron 1 of 5)	26040	NR_038258	100616668		NR_038258		TPTE2P5	-	TPTE2 pseudogene 5	pseudo
45573	chr11	118868101	118868300	+	0	NA	Intergenic	AluSz|SINE|Alu	-15692	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
57050	chr12	120856971	120857380	+	0	NA	intron (NM_139015, intron 1 of 10)	L1M8|LINE|L1	47183	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
175380	chr4	70691451	70691630	+	0	NA	TTS (NM_020368)	TTS (NM_020368)	3008	NM_020368	57050		NM_020368	ENSG00000132467	UTP3	CRL1|CRLZ1|SAS10	UTP3 small subunit processome component	protein-coding
38685	chr11	46559021	46559280	+	0	NA	intron (NM_001367471, intron 1 of 18)	AluSx|SINE|Alu	28294	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
184002	chr5	90783701	90784050	+	0	NA	exon (NM_032119, exon 67 of 90)	exon (NM_032119, exon 67 of 90)	225078	NM_032119	84059		NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
151328	chr21	45598271	45598630	+	0	NA	non-coding (NR_146912, exon 2 of 2)	non-coding (NR_146912, exon 2 of 2)	4796	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
8246	chr1	39766271	39766980	+	0	NA	intron (NM_001720, intron 3 of 6)	intron (NM_001720, intron 3 of 6)	4723	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
181682	chr5	50501551	50502000	+	0	NA	Intergenic	Intergenic	-60487	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
192342	chr6	24357451	24358250	+	0	NA	exon (NM_181337, exon 1 of 1)	exon (NM_181337, exon 1 of 1)	209	NM_016356	51473		NM_016356	ENSG00000146038	DCDC2	DCDC2A|DFNB66|NPHP19|NSC|RU2|RU2S	doublecortin domain containing 2	protein-coding
159277	chr3	12964851	12965650	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	2480	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
5202	chr1	24963251	24963970	+	0	NA	intron (NM_001031680, intron 1 of 5)	MIR|SINE|MIR	1400	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
11223	chr1	88877421	88878330	+	0	NA	intron (NM_001514, intron 2 of 6)	AluSx1|SINE|Alu	13692	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
110574	chr19	2149151	2149250	+	0	NA	intron (NM_001374799, intron 1 of 31)	MIR1_Amn|SINE|MIR	2366	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
127465	chr2	42217971	42218530	+	0	NA	intron (NM_019063, intron 1 of 22)	MER1A|DNA|hAT-Charlie	-48019	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
165610	chr3	101682321	101682800	+	0	NA	intron (NM_000986, intron 4 of 5)	intron (NM_000986, intron 4 of 5)	4158	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
102276	chr17	75299201	75299600	+	0	NA	Intergenic	AluJb|SINE|Alu	-9951	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
39070	chr11	47980401	47981880	+	0	NA	intron (NM_002843, intron 1 of 24)	CpG	581	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
226860	chr9	78033101	78033930	+	0	NA	Intergenic	Intergenic	-1704	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
23863	chr1	234781251	234781550	+	0	NA	Intergenic	Intergenic	-21344	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
65721	chr14	52960921	52961380	+	0	NA	Intergenic	Intergenic	-10053	NM_001134999	10979		NM_006832	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	FERM domain containing kindlin 2	protein-coding
61729	chr13	74126771	74126930	+	0	NA	intron (NM_007249, intron 1 of 7)	Tigger8|DNA|TcMar-Tigger	7079	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
185258	chr5	123543271	123544050	+	0	NA	intron (NM_001364141, intron 2 of 14)	L1ME2|LINE|L1	-1757	NM_001270572	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
24613	chr1	246510901	246511100	+	0	NA	Intergenic	Intergenic	-3721	NM_001167740	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
168894	chr3	152319121	152319750	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	20421	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
93154	chr17	17757001	17758000	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	8802	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
188612	chr5	157197101	157197650	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	16535	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
195719	chr6	39100351	39100750	+	0	NA	Intergenic	L2c|LINE|L2	14636	NM_018322	55776		NM_018322	ENSG00000112167	SAYSD1	C6orf64	SAYSVFN motif domain containing 1	protein-coding
32458	chr10	102639501	102640630	+	0	NA	Intergenic	Intergenic	-4414	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
175234	chr4	56974501	56974700	+	0	NA	intron (NM_032313, intron 1 of 6)	AluSz|SINE|Alu	3006	NM_032313	84273		NM_032313	ENSG00000084092	NOA1	C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1	nitric oxide associated 1	protein-coding
219555	chr8	78515721	78517230	+	0	NA	intron (NM_181839, intron 1 of 2)	CpG	135	NM_181839	5569		NM_006823	ENSG00000171033	PKIA	PRKACN1	cAMP-dependent protein kinase inhibitor alpha	protein-coding
135966	chr2	172092751	172092850	+	0	NA	Intergenic	Intergenic	7293	NM_178120	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
177946	chr4	138871071	138871300	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	141461	NR_133945	105377448		NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
233691	chrX	1182751	1183450	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	29549	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
186547	chr5	138456671	138457030	+	0	NA	Intergenic	AluSx|SINE|Alu	-8629	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
194522	chr6	33301271	33301650	+	0	NA	3' UTR (NM_003190, exon 8 of 8).3	3' UTR (NM_003190, exon 8 of 8).3	-2072	NM_001243738	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
2590	chr1	9834601	9834800	+	0	NA	Intergenic	Intergenic	-10174	NM_014944	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
7032	chr1	31926801	31927800	+	0	NA	intron (NM_080391, intron 1 of 5)	L1PA15|LINE|L1	10518	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
105102	chr17	82155571	82155730	+	0	NA	3' UTR (NM_001316321, exon 15 of 15)	3' UTR (NM_001316321, exon 15 of 15)	57192	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
164498	chr3	60551501	60551700	+	0	NA	intron (NM_001166243, intron 4 of 9)	G-rich|Low_complexity|Low_complexity	66270	NR_128708	103504735		NR_128708	ENSG00000281426	MIR548BB	MI0029321|hsa-mir-548bb	microRNA 548bb	ncRNA
44740	chr11	111941821	111942080	+	0	NA	intron (NM_001037954, intron 1 of 19)	intron (NM_001037954, intron 1 of 19)	4607	NM_001037954	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
98447	chr17	46943421	46943680	+	0	NA	intron (NM_001321133, intron 6 of 6)	intron (NM_001321133, intron 6 of 6)	20390	NM_001321133	9570		NM_004287	ENSG00000108433	GOSR2	Bos1|EPM6|GS27|MYOS	golgi SNAP receptor complex member 2	protein-coding
148312	chr20	63739001	63739900	+	0	NA	promoter-TSS (NM_020062)	promoter-TSS (NM_020062)	-326	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
150423	chr21	42410271	42410630	+	0	NA	intron (NM_001243467, intron 3 of 11)	intron (NM_001243467, intron 3 of 11)	6548	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
123147	chr19	52169501	52169700	+	0	NA	intron (NM_001102657, intron 2 of 4)	intron (NM_001102657, intron 2 of 4)	2021	NM_001102657	162962		NM_001102657	ENSG00000196267	ZNF836	-	zinc finger protein 836	protein-coding
23203	chr1	227541851	227543250	+	0	NA	Intergenic	CpG	-21006	NM_001367909	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
193240	chr6	29928551	29929680	+	0	NA	Intergenic	Intergenic	-1900	NR_001317	80868		NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B	ncRNA
209857	chr7	90334771	90335180	+	0	NA	promoter-TSS (NR_110085)	promoter-TSS (NR_110085)	-248	NR_110085	101927446		NR_110085	ENSG00000105793	LOC101927446	-	uncharacterized LOC101927446	ncRNA
139859	chr2	230591571	230592200	+	0	NA	Intergenic	Intergenic	108644	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
141382	chr2	240733051	240733380	+	0	NA	intron (NM_001379639, intron 36 of 47)	intron (NM_001379639, intron 36 of 47)	41349	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
93655	chr17	19192151	19192250	+	0	NA	Intergenic	AluSg|SINE|Alu	-1955	NR_006881	780853		NR_006881		SNORD3C	RNU3-3|U3-3	small nucleolar RNA, C/D box 3C	snoRNA
182012	chr5	55337171	55337530	+	0	NA	intron (NM_015360, intron 5 of 26)	AluJb|SINE|Alu	29361	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
173623	chr4	11505451	11505750	+	0	NA	Intergenic	Intergenic	-76706	NM_005114	9957		NM_005114	ENSG00000002587	HS3ST1	3OST|3OST1	heparan sulfate-glucosamine 3-sulfotransferase 1	protein-coding
45322	chr11	118198351	118198950	+	0	NA	intron (NR_104479, intron 6 of 8)	intron (NR_104479, intron 6 of 8)	14296	NM_001286571	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
51504	chr12	52143821	52144280	+	0	NA	Intergenic	Intergenic	47964	NM_001081492	144501		NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
17815	chr1	159854051	159855580	+	0	NA	non-coding (NR_147122, exon 1 of 4)	non-coding (NR_147122, exon 1 of 4)	222	NR_147124	284677		NM_001134233	ENSG00000188004	SNHG28	C1orf204|VSIG8-OT1	small nucleolar RNA host gene 28	ncRNA
155543	chr22	38713071	38713230	+	0	NA	intron (NM_004286, intron 2 of 11)	intron (NM_004286, intron 2 of 11)	7206	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
181557	chr5	43129951	43130250	+	0	NA	intron (NM_001330710, intron 3 of 5)	AluSx|SINE|Alu	8535	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
113925	chr19	10717151	10718780	+	0	NA	promoter-TSS (NM_001190716)	promoter-TSS (NM_001190716)	-88	NM_004945	1785		NM_004945	ENSG00000079805	DNM2	CMT2M|CMTDI1|CMTDIB|DI-CMTB|DYN2|DYNII|LCCS5	dynamin 2	protein-coding
76450	chr15	74825651	74825750	+	0	NA	promoter-TSS (NM_001030005)	promoter-TSS (NM_001030005)	-927	NM_001030005	594855		NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII|Nbla11589	complexin 3	protein-coding
117176	chr19	19353051	19353150	+	0	NA	intron (NM_015329, intron 16 of 18)	intron (NM_015329, intron 16 of 18)	32271	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
184228	chr5	96565971	96566330	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-95887	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
60219	chr13	40494221	40494690	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-13449	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
50356	chr12	47197171	47197330	+	0	NA	intron (NM_001281429, intron 2 of 2)	AluSx1|SINE|Alu	9438	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
217670	chr8	30101401	30102130	+	0	NA	intron (NM_015344, intron 1 of 3)	intron (NM_015344, intron 1 of 3)	6357	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
174395	chr4	39179821	39180800	+	0	NA	Intergenic	AluSx|SINE|Alu	-2219	NM_001317924	57728		NM_025132	ENSG00000157796	WDR19	ATD5|CED4|CFAP66|DYF-2|FAP66|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SPGF72|SRTD5	WD repeat domain 19	protein-coding
39969	chr11	62589071	62589730	+	0	NA	intron (NM_022830, intron 1 of 8)	AluSc8|SINE|Alu	2123	NM_001367906	64852		NM_022830	ENSG00000149016	TUT1	PAPD2|RBM21|STARPAP|TENT1|TUTase|URLC6	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding
71144	chr14	104987001	104988200	+	0	NA	intron (NM_174891, intron 1 of 4)	AluSx1|SINE|Alu	1321	NM_001364170	122616		NM_174891	ENSG00000140104	CLBA1	C14orf79	clathrin binding box of aftiphilin containing 1	protein-coding
10713	chr1	75726821	75727230	+	0	NA	intron (NM_001286044, intron 1 of 8)	AluSg|SINE|Alu	2316	NM_000016	34		NM_000016	ENSG00000117054	ACADM	ACAD1|MCAD|MCADH	acyl-CoA dehydrogenase medium chain	protein-coding
179014	chr4	164725251	164725350	+	0	NA	Intergenic	Intergenic	-28831	NM_001352885	100505989		NM_001352885	ENSG00000248771	SMIM31	LINC01207|h.EPR	small integral membrane protein 31	protein-coding
223997	chr9	2146521	2146900	+	0	NA	intron (NM_003070, intron 27 of 33)	MER41A|LTR|ERV1	-10952	NM_001289398	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
195552	chr6	37481771	37482380	+	0	NA	TTS (NM_015050)	TTS (NM_015050)	17818	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
90464	chr17	1382921	1383630	+	0	NA	intron (NR_024058, intron 1 of 6)	AluSp|SINE|Alu	16947	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
200579	chr6	136326151	136326330	+	0	NA	Intergenic	Intergenic	-36389	NM_001077440	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
130577	chr2	85817251	85817650	+	0	NA	intron (NR_038888, intron 1 of 2)	AluY|SINE|Alu	2320	NR_038888	284950		NR_038888		LOC284950	-	uncharacterized LOC284950	ncRNA
173724	chr4	15958571	15958930	+	0	NA	Intergenic	Intergenic	4425	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
72056	chr15	28835351	28835650	+	0	NA	intron (NR_037599, intron 11 of 13)	intron (NR_037599, intron 11 of 13)	13185	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
38184	chr11	36363321	36363980	+	0	NA	intron (NM_001160167, intron 1 of 8)	intron (NM_001160167, intron 1 of 8)	-12335	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
64643	chr14	31286721	31286980	+	0	NA	Intergenic	LTR1D|LTR|ERV1	-79057	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
169789	chr3	173066251	173066350	+	0	NA	intron (NM_031955, intron 2 of 10)	L1MA4|LINE|L1	74935	NM_031955	83893		NM_031955	ENSG00000144962	SPATA16	NYD-SP12|SPGF6	spermatogenesis associated 16	protein-coding
158659	chr3	5025871	5027180	+	0	NA	Intergenic	CpG	-46564	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
221808	chr8	127990451	127990950	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	-18198	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
185644	chr5	131537951	131539250	+	0	NA	intron (NM_016340, intron 6 of 27)	MER2B|DNA|TcMar-Tigger	96629	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
4514	chr1	21778801	21779230	+	0	NA	intron (NM_001350166, intron 1 of 26)	AluY|SINE|Alu	4134	NM_001350164	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
119256	chr19	39505071	39505830	+	0	NA	exon (NM_203486, exon 6 of 9)	exon (NM_203486, exon 6 of 9)	6503	NM_203486	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
22190	chr1	212324401	212324600	+	0	NA	intron (NM_001199756, intron 1 of 12)	intron (NM_001199756, intron 1 of 12)	22642	NM_001199756	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
175499	chr4	73261671	73261830	+	0	NA	Intergenic	Intergenic	-2952	NM_032217	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
31360	chr10	93497551	93497650	+	0	NA	intron (NM_018131, intron 1 of 8)	intron (NM_018131, intron 1 of 8)	988	NM_001127182	55165		NM_018131	ENSG00000138180	CEP55	C10orf3|CT111|MARCH|URCC6	centrosomal protein 55	protein-coding
2328	chr1	9182221	9182550	+	0	NA	promoter-TSS (NR_132742)	promoter-TSS (NR_132742)	-47	NR_132742	106614088		NR_132742	ENSG00000228526	MIR34AHG	lnc34a	MIR34A host gene	ncRNA
204820	chr7	5688001	5688580	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-7829	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
86870	chr16	67966271	67967760	+	0	NA	promoter-TSS (NM_001145964)	promoter-TSS (NM_001145964)	-221	NM_001145964	6560		NM_005072	ENSG00000124067	SLC12A4	CTC-479C5.17|KCC1|hKCC1	solute carrier family 12 member 4	protein-coding
199569	chr6	118898221	118898800	+	0	NA	intron (NM_001378365, intron 7 of 7)	AluSz|SINE|Alu	4358	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
50198	chr12	46185801	46186330	+	0	NA	3' UTR (NM_001077484, exon 17 of 17)	3' UTR (NM_001077484, exon 17 of 17)	80451	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
179387	chr4	183637501	183637700	+	0	NA	Intergenic	Intergenic	21585	NM_152682	201965		NM_152682	ENSG00000182552	RWDD4	FAM28A|RWDD4A	RWD domain containing 4	protein-coding
99686	chr17	50771501	50771780	+	0	NA	Intergenic	AluY|SINE|Alu	2990	NR_107026	102466918		NR_107026	ENSG00000278672	MIR8059	hsa-mir-8059	microRNA 8059	ncRNA
166663	chr3	120074101	120074300	+	0	NA	intron (NM_001146156, intron 1 of 10)	AluJb|SINE|Alu	10448	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
158909	chr3	9978101	9978800	+	0	NA	intron (NM_018447, intron 2 of 8)	intron (NM_018447, intron 2 of 8)	-8443	NR_103821	442075		NM_001013730		EMC3-AS1	-	EMC3 antisense RNA 1	ncRNA
143637	chr20	31837901	31838100	+	0	NA	Intergenic	L2c|LINE|L2	7604	NM_004118	2307		NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
130320	chr2	84973071	84973480	+	0	NA	intron (NM_020122, intron 1 of 6)	L3b|LINE|CR1	2114	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
202575	chr6	158685201	158685400	+	0	NA	intron (NM_001318745, intron 3 of 14)	AluSz|SINE|Alu	21897	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
22165	chr1	212234521	212234980	+	0	NA	promoter-TSS (NR_125982)	promoter-TSS (NR_125982)	-14	NR_125982	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
222484	chr8	140358621	140358980	+	0	NA	intron (NM_001374684, intron 8 of 21)	intron (NM_001374684, intron 8 of 21)	98944	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
225813	chr9	37746101	37746300	+	0	NA	exon (NM_014907, exon 16 of 16)	exon (NM_014907, exon 16 of 16)	-7603	NM_001286952	158234		NM_144964	ENSG00000165275	TRMT10B	RG9MTD3|bA3J10.9	tRNA methyltransferase 10B	protein-coding
31395	chr10	95237101	95237500	+	0	NA	TTS (NM_020992)	TTS (NM_020992)	43100	NM_207321	142827		NM_207321	ENSG00000173124	ACSM6	C10orf129|bA310E22.3	acyl-CoA synthetase medium chain family member 6	protein-coding
172897	chr4	3481471	3481630	+	0	NA	intron (NM_001301071, intron 4 of 9)	intron (NM_001301071, intron 4 of 9)	-2994	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
1054	chr1	1896121	1896380	+	0	NA	Intergenic	Intergenic	5070	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
50405	chr12	47353601	47353800	+	0	NA	Intergenic	AluJb|SINE|Alu	10569	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
85998	chr16	57464521	57464980	+	0	NA	intron (NM_032940, intron 2 of 8)	MIR3|SINE|MIR	2071	NM_032940	5432		NM_002694	ENSG00000102978	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	RNA polymerase II subunit C	protein-coding
50891	chr12	49267421	49267700	+	0	NA	intron (NM_032704, intron 1 of 3)	AluSx1|SINE|Alu	2478	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
199680	chr6	122491921	122492300	+	0	NA	intron (NM_001270393, intron 3 of 7)	intron (NM_001270393, intron 3 of 7)	20193	NM_181794	5570		NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
172436	chr4	1872201	1874480	+	0	NA	intron (NM_001042424, intron 1 of 21)	intron (NM_001042424, intron 1 of 21)	1947	NM_001042424	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
167419	chr3	129016211	129016770	+	0	NA	intron (NM_024768, intron 2 of 7)	intron (NM_024768, intron 2 of 7)	-12488	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
232874	chr9	136825251	136825750	+	0	NA	intron (NM_024718, intron 2 of 14)	intron (NM_024718, intron 2 of 14)	-5457	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
228790	chr9	111661121	111663680	+	0	NA	intron (NM_001198664, intron 1 of 2)	intron (NM_001198664, intron 1 of 2)	795	NM_001017998	2790		NM_001017998	ENSG00000242616	GNG10	-	G protein subunit gamma 10	protein-coding
193573	chr6	30672221	30673480	+	0	NA	5' UTR (NM_003587, exon 1 of 20).3	5' UTR (NM_003587, exon 1 of 20).3	156	NM_003587	8449		NM_003587	ENSG00000204560	DHX16	DBP2|DDX16|NMOAS|PRO2014|PRP8|PRPF2|Prp2	DEAH-box helicase 16	protein-coding
142554	chr20	5130671	5131030	+	0	NA	intron (NM_003818, intron 1 of 12)	AluY|SINE|Alu	3842	NM_003818	8760		NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
91590	chr17	5239671	5239830	+	0	NA	Intergenic	AluSg7|SINE|Alu	-4890	NM_001271842	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
164466	chr3	59839971	59840400	+	0	NA	intron (NM_001354590, intron 7 of 8)	intron (NM_001354590, intron 7 of 8)	-181688	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
6526	chr1	28557921	28558630	+	0	NA	intron (NM_017846, intron 2 of 8)	AluSx|SINE|Alu	5190	NM_017846	54952		NM_017846	ENSG00000180098	TRNAU1AP	PRO1902|SECP43|TRSPAP1	tRNA selenocysteine 1 associated protein 1	protein-coding
185743	chr5	132103301	132105080	+	0	NA	Intergenic	Intergenic	30401	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
151757	chr22	17917671	17917850	+	0	NA	intron (NM_015241, intron 1 of 31)	L2a|LINE|L2	-10874	NM_001122731	57553		NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
29682	chr10	72047321	72047600	+	0	NA	Intergenic	AluSx|SINE|Alu	41091	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
214692	chr7	150979951	150980050	+	0	NA	Intergenic	Intergenic	-1679	NM_000238	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
97148	chr17	42564921	42565380	+	0	NA	intron (NM_025233, intron 5 of 8)	intron (NM_025233, intron 5 of 8)	-1910	NM_198205	6945		NM_013383	ENSG00000108788	MLX	MAD7|MXD7|TCFL4|TF4|bHLHd13	MAX dimerization protein MLX	protein-coding
145271	chr20	40966221	40966480	+	0	NA	Intergenic	Intergenic	-14363	NR_145524	100128988		NR_145524		LOC100128988	-	uncharacterized LOC100128988	ncRNA
177842	chr4	127887851	127888150	+	0	NA	intron (NM_001190801, intron 6 of 15)	AluSz|SINE|Alu	6756	NM_001190801	10733		NM_014264	ENSG00000142731	PLK4	MCCRP2|SAK|STK18	polo like kinase 4	protein-coding
135862	chr2	170931771	170932350	+	0	NA	intron (NM_015530, intron 1 of 9)	AluSq2|SINE|Alu	2807	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
196584	chr6	44178551	44179830	+	0	NA	intron (NM_007058, intron 12 of 22)	intron (NM_007058, intron 12 of 22)	20370	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105474	chr17	83067371	83067530	+	0	NA	Intergenic	Intergenic	-12159	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
155270	chr22	38052151	38052930	+	0	NA	Intergenic	Intergenic	-4715	NM_001039584	9463		NM_012407	ENSG00000100151	PICK1	PICK|PRKCABP	protein interacting with PRKCA 1	protein-coding
125585	chr2	16656121	16656380	+	0	NA	intron (NM_030797, intron 1 of 11)	(AC)n|Simple_repeat|Simple_repeat	9584	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
58412	chr12	131914901	131915350	+	0	NA	exon (NM_003565, exon 17 of 28)	exon (NM_003565, exon 17 of 28)	-14151	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
66767	chr14	64539321	64539580	+	0	NA	intron (NR_110550, intron 1 of 3)	intron (NR_110550, intron 1 of 3)	918	NR_110550	102723809		NR_110550	ENSG00000259116	HSPA2-AS1	-	HSPA2 and ZBTB1 antisense RNA 1	ncRNA
91565	chr17	5116101	5116780	+	0	NA	promoter-TSS (NM_001320954)	promoter-TSS (NM_001320954)	8	NM_001320954	7775		NM_014519	ENSG00000167840	ZNF232	ZSCAN11	zinc finger protein 232	protein-coding
120406	chr19	43779351	43779450	+	0	NA	intron (NM_002250, intron 1 of 8)	intron (NM_002250, intron 1 of 8)	1573	NM_002250	3783		NM_002250	ENSG00000104783	KCNN4	DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium calcium-activated channel subfamily N member 4	protein-coding
169617	chr3	171261271	171262780	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-155266	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
97841	chr17	44959771	44961000	+	0	NA	intron (NM_006688, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	7918	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
228461	chr9	99846901	99847100	+	0	NA	intron (NM_173200, intron 7 of 8)	intron (NM_173200, intron 7 of 8)	25115	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
166764	chr3	122306451	122306550	+	0	NA	Intergenic	FRAM|SINE|Alu	-18748	NM_005213	1475		NM_005213	ENSG00000121552	CSTA	AREI|PSS4|STF1|STFA	cystatin A	protein-coding
202462	chr6	158207471	158207630	+	0	NA	Intergenic	L2c|LINE|L2	39200	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
138644	chr2	210480051	210480400	+	0	NA	intron (NM_001122633, intron 1 of 38)	intron (NM_001122633, intron 1 of 38)	2540	NM_001369257	1373		NM_001875	ENSG00000021826	CPS1	CPSASE1|GATD6|PHN	carbamoyl-phosphate synthase 1	protein-coding
146144	chr20	48679901	48680100	+	0	NA	intron (NM_020820, intron 11 of 39)	intron (NM_020820, intron 11 of 39)	147999	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
68420	chr14	81193921	81194250	+	0	NA	intron (NM_015859, intron 6 of 8)	intron (NM_015859, intron 6 of 8)	8749	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
7270	chr1	32368971	32369130	+	0	NA	intron (NM_018045, intron 9 of 10)	L1ME4a|LINE|L1	6511	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
201643	chr6	149472451	149472750	+	0	NA	intron (NM_207360, intron 2 of 5)	intron (NM_207360, intron 2 of 5)	12414	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
9644	chr1	52601301	52601500	+	0	NA	promoter-TSS (NM_015696)	promoter-TSS (NM_015696)	-971	NM_015696	2882		NM_015696	ENSG00000116157	GPX7	CL683|GPX6|GPx-7|GSHPx-7|NPGPx	glutathione peroxidase 7	protein-coding
160322	chr3	27627671	27628400	+	0	NA	Intergenic	Intergenic	94288	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
147754	chr20	62414071	62414430	+	0	NA	exon (NM_080833, exon 10 of 14)	exon (NM_080833, exon 10 of 14)	-6967	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
212244	chr7	121389871	121390030	+	0	NA	intron (NM_001040020, intron 1 of 9)	intron (NM_001040020, intron 1 of 9)	6358	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
200546	chr6	136262921	136263380	+	0	NA	intron (NM_001363659, intron 10 of 11)	MIR|SINE|MIR	-12839	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
58635	chr12	132506411	132507230	+	0	NA	intron (NM_001382742, intron 1 of 2)	intron (NM_001382742, intron 1 of 2)	1414	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
40236	chr11	63581321	63581700	+	0	NA	intron (NM_007069, intron 3 of 3)	MER11A|LTR|ERVK	-18131	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
209678	chr7	80135421	80136330	+	0	NA	promoter-TSS (NM_001256414)	promoter-TSS (NM_001256414)	91	NM_001256414	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
59808	chr13	30388901	30389700	+	0	NA	Intergenic	Intergenic	-15386	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
132826	chr2	110574401	110574900	+	0	NA	intron (NM_001384363, intron 1 of 22).2	AluY|SINE|Alu	2250	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
117092	chr19	19145901	19147430	+	0	NA	intron (NM_001145785, intron 6 of 8)	intron (NM_001145785, intron 6 of 8)	-8187	NM_001256766	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
157012	chr22	42528051	42528350	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	-8404	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
236348	chrX	70197221	70197480	+	0	NA	intron (NM_198512, intron 1 of 6)	intron (NM_198512, intron 1 of 6)	19867	NM_198512	347516		NM_198512	ENSG00000184210	DGAT2L6	DC3	diacylglycerol O-acyltransferase 2 like 6	protein-coding
137478	chr2	197121021	197122280	+	0	NA	intron (NM_153697, intron 7 of 9)	intron (NM_153697, intron 7 of 9)	-76341	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
190696	chr6	191051	191350	+	0	NA	intron (NR_126020, intron 2 of 7)	intron (NR_126020, intron 2 of 7)	14284	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
121238	chr19	46654751	46655330	+	0	NA	promoter-TSS (NM_001301046)	promoter-TSS (NM_001301046)	-322	NM_001301046	147906		NM_145056	ENSG00000197380	DACT3	DAPPER3|RRR1	dishevelled binding antagonist of beta catenin 3	protein-coding
166286	chr3	112499021	112500300	+	0	NA	promoter-TSS (NM_181780)	promoter-TSS (NM_181780)	-188	NM_001085357	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
116759	chr19	18486121	18487180	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	35420	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
23726	chr1	232226171	232226580	+	0	NA	Intergenic	Intergenic	300541	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
27524	chr10	32309501	32309780	+	0	NA	intron (NR_168508, intron 1 of 12)	FLAM_C|SINE|Alu	37518	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
220297	chr8	98085521	98085850	+	0	NA	intron (NM_001170806, intron 1 of 1)	intron (NM_001170806, intron 1 of 1)	21117	NM_173549	203111		NM_173549	ENSG00000177459	ERICH5	C8orf47	glutamate rich 5	protein-coding
229514	chr9	122453171	122453350	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	24666	NM_001004451	347168		NM_001004451	ENSG00000136834	OR1J1	OR9-18|hg32	olfactory receptor family 1 subfamily J member 1	protein-coding
59101	chr13	21144001	21145280	+	0	NA	intron (NM_005870, intron 2 of 3)	MLT2C1|LTR|ERVL	4094	NM_001366643	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
230453	chr9	128189271	128189430	+	0	NA	intron (NM_001257976, intron 2 of 15)	intron (NM_001257976, intron 2 of 15)	2222	NM_001257976	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
37619	chr11	20342571	20342800	+	0	NA	Intergenic	L1PA8A|LINE|L1	-21000	NM_006410	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
117149	chr19	19318951	19319050	+	0	NA	intron (NM_172231, intron 1 of 13)	AluSx1|SINE|Alu	1509	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
47687	chr12	6368571	6368730	+	0	NA	intron (NM_001159575, intron 2 of 12)	MIR|SINE|MIR	-6510	NM_001270987	4055		NM_002342	ENSG00000111321	LTBR	D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	lymphotoxin beta receptor	protein-coding
191593	chr6	12043401	12043800	+	0	NA	intron (NM_002114, intron 2 of 8)	AluSx1|SINE|Alu	31288	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
54164	chr12	76759851	76760580	+	0	NA	Intergenic	AluY|SINE|Alu	-3900	NM_015336	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
205426	chr7	16660271	16660430	+	0	NA	promoter-TSS (NM_001362717)	promoter-TSS (NM_001362717)	-864	NM_001362717	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
89416	chr16	88882321	88882600	+	0	NA	intron (NM_175931, intron 7 of 10)	intron (NM_175931, intron 7 of 10)	-1055	NR_135194	101927793		NR_135194	ENSG00000259881	LOC101927793	-	uncharacterized LOC101927793	ncRNA
53945	chr12	71841471	71841630	+	0	NA	intron (NR_027449, intron 1 of 15)	L2b|LINE|L2	1791	NM_022771	64786		NM_022771	ENSG00000121749	TBC1D15	RAB7-GAP	TBC1 domain family member 15	protein-coding
120094	chr19	42130021	42130730	+	0	NA	intron (NM_001247994, intron 1 of 13)	MIRc|SINE|MIR	2071	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
12798	chr1	109796201	109796400	+	0	NA	Intergenic	AluSz6|SINE|Alu	-32377	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
179881	chr5	631801	633080	+	0	NA	intron (NR_164122, intron 4 of 15)	intron (NR_164122, intron 4 of 15)	20100	NM_018140	55722		NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72	protein-coding
217999	chr8	38392021	38392430	+	0	NA	intron (NM_144652, intron 2 of 9)	AluSq|SINE|Alu	5094	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
127888	chr2	46177321	46178150	+	0	NA	intron (NM_005400, intron 14 of 14)	MLT1C|LTR|ERVL-MaLR	-119672	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
147653	chr20	62219871	62222350	+	0	NA	promoter-TSS (NM_007232)	promoter-TSS (NM_007232)	-832	NM_007232	11255		NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
168138	chr3	138942501	138943330	+	0	NA	intron (NR_121649, intron 1 of 2)	intron (NR_121649, intron 1 of 2)	1105	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
15656	chr1	150872751	150873050	+	0	NA	intron (NM_001350224, intron 1 of 22)	AluJr|SINE|Alu	3699	NM_001197325	405		NM_001668	ENSG00000143437	ARNT	ARNT1|HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2	aryl hydrocarbon receptor nuclear translocator	protein-coding
201744	chr6	149924771	149925330	+	0	NA	Intergenic	Intergenic	-1929	NR_130110	353091		NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
55424	chr12	104498201	104499630	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	41967	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
85064	chr16	32083971	32084330	+	0	NA	Intergenic	Intergenic	103963	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
188862	chr5	159286471	159286700	+	0	NA	TTS (NM_145049)	TTS (NM_145049)	23295	NM_145049	134510		NM_145049	ENSG00000164332	UBLCP1	CPUB1	ubiquitin like domain containing CTD phosphatase 1	protein-coding
190940	chr6	2891151	2892280	+	0	NA	intron (NM_004155, intron 6 of 6)	CpG	7727	NR_110841	101927730		NR_110841		SERPINB9-AS1	-	SERPINB9 antisense RNA 1	ncRNA
138743	chr2	214806671	214806830	+	0	NA	intron (NR_104212, intron 1 of 9)	AluSz|SINE|Alu	2933	NM_001282549	580		NM_000465	ENSG00000138376	BARD1	-	BRCA1 associated RING domain 1	protein-coding
79541	chr16	893371	893680	+	0	NA	intron (NM_001352017, intron 5 of 11)	intron (NM_001352017, intron 5 of 11)	-27508	NR_110946	101929387		NR_110945	ENSG00000260439	LMF1-AS1	LA16c-366D3.1	LMF1 antisense RNA 1	ncRNA
93722	chr17	19519871	19520230	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-13804	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
172391	chr4	1769221	1769830	+	0	NA	Intergenic	Intergenic	-23768	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
126116	chr2	26035401	26035630	+	0	NA	intron (NM_016131, intron 1 of 5)	intron (NM_016131, intron 1 of 5)	1431	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
165860	chr3	105891171	105891330	+	0	NA	Intergenic	Intergenic	-21849	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
87344	chr16	70344521	70344780	+	0	NA	intron (NR_039997, intron 1 of 4)	AluY|SINE|Alu	2097	NR_039997	100506083		NR_039997	ENSG00000261777	DDX19A-DT	-	DDX19A divergent transcript	ncRNA
226610	chr9	73167051	73167230	+	0	NA	intron (NM_000700, intron 10 of 12)	intron (NM_000700, intron 10 of 12)	15275	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
147903	chr20	62892421	62893180	+	0	NA	intron (NM_001193369, intron 13 of 15)	intron (NM_001193369, intron 13 of 15)	-9897	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
183385	chr5	77638701	77639200	+	0	NA	promoter-TSS (NM_032109)	promoter-TSS (NM_032109)	-237	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
110225	chr19	1762051	1762350	+	0	NA	intron (NM_001080488, intron 1 of 1)	CpG	8694	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
112047	chr19	5136421	5137030	+	0	NA	intron (NM_015015, intron 15 of 22)	intron (NM_015015, intron 15 of 22)	167612	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
207775	chr7	50204521	50204780	+	0	NA	Intergenic	Intergenic	-99414	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
13050	chr1	111354551	111355250	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	8278	NM_181643	128344		NM_181643	ENSG00000173947	CIMAP3	C1orf88|PIFO|pitchfork	ciliary microtubule associated protein 3	protein-coding
45092	chr11	117083971	117084550	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSx|SINE|Alu	14168	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
204571	chr7	5230471	5231180	+	0	NA	intron (NM_015610, intron 12 of 12)	intron (NM_015610, intron 12 of 12)	16556	NM_001033520	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
32940	chr10	110353171	110354000	+	0	NA	Intergenic	Intergenic	-48665	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
114070	chr19	11093821	11094100	+	0	NA	intron (NM_001195800, intron 1 of 15)	intron (NM_001195800, intron 1 of 15)	-4301	NR_163945	115271120		NR_163945		LDLR-AS1	-	LDLR antisense RNA 1	ncRNA
52113	chr12	54193701	54193900	+	0	NA	Intergenic	Intergenic	-4806	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
218058	chr8	38899671	38902880	+	0	NA	promoter-TSS (NM_021623)	promoter-TSS (NM_021623)	-71	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
214918	chr7	151505501	151506230	+	0	NA	intron (NM_005614, intron 1 of 7)	L1ME1|LINE|L1	14030	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
76818	chr15	77084771	77084930	+	0	NA	Intergenic	MIRb|SINE|MIR	-13741	NM_198902	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
21481	chr1	205660171	205660350	+	0	NA	intron (NM_033102, intron 4 of 4)	intron (NM_033102, intron 4 of 4)	20249	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
48314	chr12	9004321	9004580	+	0	NA	intron (NM_005810, intron 3 of 4)	intron (NM_005810, intron 3 of 4)	14825	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
25489	chr10	7004821	7005150	+	0	NA	Intergenic	L1PA8A|LINE|L1	181799	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
72783	chr15	39933521	39934980	+	0	NA	exon (NM_001013703, exon 1 of 39)	exon (NM_001013703, exon 1 of 39)	135	NM_001013703	440275		NM_001013703	ENSG00000128829	EIF2AK4	GCN2|PVOD2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding
221977	chr8	129989971	129990130	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	18403	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
233538	chrX	230051	231050	+	0	NA	Intergenic	Intergenic	-45806	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228338	chr9	98933321	98933780	+	0	NA	Intergenic	MIR3|SINE|MIR	-10357	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
116931	chr19	18837901	18838100	+	0	NA	intron (NM_001297549, intron 1 of 23)	intron (NM_001297549, intron 1 of 23)	6041	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
217124	chr8	25197651	25197750	+	0	NA	intron (NM_024940, intron 1 of 51)	AluSc|SINE|Alu	13011	NM_024940	80005		NM_024940	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
76111	chr15	72508601	72509280	+	0	NA	intron (NM_005744, intron 1 of 13)	AluSx|SINE|Alu	34610	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
18676	chr1	167234951	167235250	+	0	NA	intron (NM_001198786, intron 1 of 14)	intron (NM_001198786, intron 1 of 14)	14214	NM_002697	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
159844	chr3	16509771	16510430	+	0	NA	intron (NM_015150, intron 1 of 9)	intron (NM_015150, intron 1 of 9)	3599	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
238629	chrX	153958451	153958950	+	0	NA	exon (NM_005334, exon 10 of 26)	exon (NM_005334, exon 10 of 26)	-10065	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
42155	chr11	67731671	67732630	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-50926	NM_001031615	222		NM_000695	ENSG00000132746	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family member B2	protein-coding
108627	chr18	76398901	76399530	+	0	NA	intron (NM_014643, intron 3 of 6)	intron (NM_014643, intron 3 of 6)	-92437	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
56781	chr12	120188851	120189350	+	0	NA	intron (NM_006836, intron 2 of 57)	AluSg|SINE|Alu	5615	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
195635	chr6	37852301	37852500	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	32673	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
112229	chr19	5711101	5711500	+	0	NA	intron (NR_076392, intron 5 of 18)	intron (NR_076392, intron 5 of 18)	8846	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
126634	chr2	28813601	28814000	+	0	NA	intron (NM_001142634, intron 1 of 6)	AluSx1|SINE|Alu	-2197	NM_001008779	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
24533	chr1	244844171	244845050	+	0	NA	non-coding (NR_132421, exon 3 of 3)	non-coding (NR_132421, exon 3 of 3)	8952	NM_198076	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
63469	chr13	114144821	114145080	+	0	NA	Intergenic	Intergenic	-12327	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
220122	chr8	94713301	94713600	+	0	NA	Intergenic	Intergenic	-6450	NM_181787	286148		NM_181787	ENSG00000156162	DPY19L4	-	dpy-19 like 4	protein-coding
72821	chr15	40110901	40111100	+	0	NA	Intergenic	(CTTC)n|Simple_repeat|Simple_repeat	-2121	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
94498	chr17	29292321	29293300	+	0	NA	intron (NM_020772, intron 1 of 3)	CpG	1338	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
176180	chr4	83340571	83341530	+	0	NA	Intergenic	Intergenic	-5897	NM_001166498	10855		NM_006665	ENSG00000173083	HPSE	HPA|HPA1|HPR1|HPSE1|HSE1	heparanase	protein-coding
16564	chr1	154982571	154983830	+	0	NA	promoter-TSS (NM_001184892)	promoter-TSS (NM_001184892)	-144	NM_025207	80308		NM_025207	ENSG00000160688	FLAD1	FAD1|FADS|LSMFLAD|PP591	flavin adenine dinucleotide synthetase 1	protein-coding
196036	chr6	42039151	42040250	+	0	NA	intron (NM_001287434, intron 1 of 4)	intron (NM_001287434, intron 1 of 4)	9194	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
80300	chr16	2264901	2265100	+	0	NA	intron (NM_080594, intron 1 of 7)	intron (NM_080594, intron 1 of 7)	2337	NM_001286625	10921		NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
56823	chr12	120223071	120223230	+	0	NA	intron (NM_001080855, intron 3 of 11)	intron (NM_001080855, intron 3 of 11)	21859	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
6876	chr1	31298701	31298900	+	0	NA	intron (NM_001282566, intron 1 of 6)	L2b|LINE|L2	1768	NM_016505	51538		NM_016505	ENSG00000121766	ZCCHC17	HSPC251|PS1D|pNO40	zinc finger CCHC-type containing 17	protein-coding
72128	chr15	28983671	28984030	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	-11677	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
94105	chr17	27810301	27810750	+	0	NA	Intergenic	Intergenic	-9996	NM_000625	4843		NM_000625	ENSG00000007171	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2	protein-coding
56992	chr12	120566301	120567100	+	0	NA	intron (NM_001330474, intron 12 of 16)	AluSz|SINE|Alu	14698	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
126733	chr2	30194671	30194830	+	0	NA	Intergenic	Intergenic	7316	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
129530	chr2	69697101	69697500	+	0	NA	intron (NM_001320698, intron 2 of 14)	Tigger1|DNA|TcMar-Tigger	-44834	NM_001320702	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
93214	chr17	17829221	17829950	+	0	NA	intron (NM_001005291, intron 1 of 19)	intron (NM_001005291, intron 1 of 19)	-5955	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
190668	chr5	181258601	181259000	+	0	NA	intron (NM_032765, intron 1 of 1)	MER112|DNA|hAT-Charlie	2343	NM_001346048	84851		NM_032765	ENSG00000183718	TRIM52	RNF102	tripartite motif containing 52	protein-coding
209351	chr7	76267951	76268450	+	0	NA	intron (NM_001291831, intron 11 of 15)	intron (NM_001291831, intron 11 of 15)	-34473	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
101729	chr17	69235471	69235700	+	0	NA	promoter-TSS (NR_130736)	promoter-TSS (NR_130736)	-573	NR_130736	100133319		NR_130736	ENSG00000278873	PRO1804	-	uncharacterized LOC100133319	ncRNA
231727	chr9	131776501	131776780	+	0	NA	Intergenic	MIR3|SINE|MIR	-36564	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
57589	chr12	122412401	122413880	+	0	NA	intron (NM_001247997, intron 1 of 25)	intron (NM_001247997, intron 1 of 25)	9429	NM_001247997	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
154148	chr22	31272571	31273480	+	0	NA	intron (NM_005569, intron 13 of 15)	intron (NM_005569, intron 13 of 15)	19463	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
31025	chr10	88831721	88832600	+	0	NA	intron (NM_144590, intron 1 of 5)	intron (NM_144590, intron 1 of 5)	19684	NM_144590	118932		NM_144590	ENSG00000152766	ANKRD22	-	ankyrin repeat domain 22	protein-coding
217977	chr8	38361371	38361800	+	0	NA	intron (NM_017778, intron 1 of 9)	AluY|SINE|Alu	20686	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
215164	chr7	155649851	155650150	+	0	NA	intron (NM_053043, intron 1 of 17)	L1M4|LINE|L1	5339	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
168027	chr3	136896501	136896700	+	0	NA	intron (NM_001291999, intron 1 of 3)	AluJo|SINE|Alu	-33902	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
11356	chr1	89618701	89619100	+	0	NA	Intergenic	Intergenic	13994	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
569	chr1	1266171	1266330	+	0	NA	intron (NM_194315, intron 2 of 7)	intron (NM_194315, intron 2 of 7)	7604	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
236861	chrX	79413001	79413230	+	0	NA	Intergenic	Intergenic	-45563	NM_001171581	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
221124	chr8	118110671	118112630	+	0	NA	5' UTR (NM_000127, exon 1 of 11)	5' UTR (NM_000127, exon 1 of 11)	176	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
235006	chrX	39869671	39870900	+	0	NA	Intergenic	Intergenic	32724	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
112172	chr19	5657251	5657550	+	0	NA	intron (NM_001320571, intron 12 of 18)	intron (NM_001320571, intron 12 of 18)	22838	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
51713	chr12	53203721	53204230	+	0	NA	intron (NM_000889, intron 1 of 15)	L1MB5|LINE|L1	3276	NR_104181	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
7861	chr1	36376871	36377030	+	0	NA	intron (NM_032017, intron 1 of 11)	AluSg7|SINE|Alu	8974	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
71183	chr14	105051171	105051330	+	0	NA	exon (NM_013345, exon 4 of 4)	exon (NM_013345, exon 4 of 4)	14180	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
141639	chr2	241722071	241722230	+	0	NA	TTS (NM_001330161)	TTS (NM_001330161)	-12480	NM_001287249	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
194995	chr6	35391101	35391900	+	0	NA	intron (NM_001171819, intron 2 of 6)	L1MC4|LINE|L1	48942	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
123196	chr19	52602751	52602850	+	0	NA	Intergenic	AluJb|SINE|Alu	6116	NR_023311	7696		NM_003438		ZNF137P	ZNF137|pHZ-30	zinc finger protein 137, pseudogene	pseudo
49421	chr12	22692571	22692730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	67479	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
1985	chr1	6614401	6616450	+	0	NA	intron (NM_153812, intron 1 of 3)	CpG-358	1694	NM_153812	148479		NM_153812	ENSG00000116273	PHF13	PHF5|SPOC1	PHD finger protein 13	protein-coding
91079	chr17	3062771	3063130	+	0	NA	exon (NM_014566, exon 1 of 1)	exon (NM_014566, exon 1 of 1)	657	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
95071	chr17	32876101	32877800	+	0	NA	5' UTR (NM_001303280, exon 1 of 11)	5' UTR (NM_001303280, exon 1 of 11)	174	NM_015194	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
223690	chr8	144421871	144422700	+	0	NA	Intergenic	AluSp|SINE|Alu	-5441	NM_130849	55630		NM_017767	ENSG00000147804	SLC39A4	AEZ|AWMS2|ZIP4	solute carrier family 39 member 4	protein-coding
26413	chr10	17175621	17176200	+	0	NA	intron (NM_001351223, intron 1 of 11)	intron (NM_001351223, intron 1 of 11)	25762	NM_001321006	1787		NM_004412	ENSG00000107614	TRDMT1	DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1	tRNA aspartic acid methyltransferase 1	protein-coding
162771	chr3	49081171	49081980	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluJb|SINE|Alu	12057	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
58910	chr13	19681571	19681880	+	0	NA	intron (NR_044998, intron 6 of 7)	intron (NR_044998, intron 6 of 7)	48066	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
41755	chr11	66688601	66688800	+	0	NA	exon (NM_006946, exon 31 of 38)	exon (NM_006946, exon 31 of 38)	-10813	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
74926	chr15	63731721	63732180	+	0	NA	intron (NM_003922, intron 14 of 77)	intron (NM_003922, intron 14 of 77)	101998	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
158866	chr3	9846801	9847200	+	0	NA	Intergenic	Intergenic	-2941	NM_001351737	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
27216	chr10	28665901	28666100	+	0	NA	Intergenic	AluSc5|SINE|Alu	-11521	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
38143	chr11	35373351	35373650	+	0	NA	intron (NM_001252652, intron 1 of 11)	intron (NM_001252652, intron 1 of 11)	46058	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
137795	chr2	199912601	199912800	+	0	NA	intron (NM_153689, intron 1 of 1)	AluSz|SINE|Alu	1407	NM_153689	205327		NM_153689	ENSG00000178074	C2orf69	COXPD53	chromosome 2 open reading frame 69	protein-coding
52326	chr12	54976421	54977080	+	0	NA	intron (NM_001136030, intron 1 of 10)	intron (NM_001136030, intron 1 of 10)	313	NR_147064	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
209800	chr7	87873421	87873730	+	0	NA	intron (NM_018843, intron 1 of 11)	AluSg|SINE|Alu	2785	NM_018843	55972		NM_018843	ENSG00000075303	SLC25A40	MCFP	solute carrier family 25 member 40	protein-coding
45104	chr11	117094771	117096090	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	2998	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
148737	chr21	7261251	7261550	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-169237	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
8312	chr1	40073551	40073850	+	0	NA	3' UTR (NM_000310, exon 9 of 9)	3' UTR (NM_000310, exon 9 of 9)	23552	NM_000310	5538		NM_000310	ENSG00000131238	PPT1	CLN1|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding
223946	chr9	976621	977500	+	0	NA	exon (NM_021240, exon 1 of 2)	exon (NM_021240, exon 1 of 2)	405	NM_021240	58524		NM_021240	ENSG00000064218	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
181500	chr5	43007401	43008900	+	0	NA	Intergenic	Intergenic	10661	NR_034086	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
139698	chr2	227471621	227473730	+	0	NA	TTS (NR_049888)	TTS (NR_049888)	519	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
236955	chrX	101097471	101098830	+	0	NA	promoter-TSS (NM_001318521)	promoter-TSS (NM_001318521)	-32	NM_001318521	2491		NM_006733	ENSG00000102384	CENPI	CENP-I|FSHPRH1|LRPR1	centromere protein I	protein-coding
63593	chr14	20480771	20481150	+	0	NA	Intergenic	AluJr|SINE|Alu	11554	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
86395	chr16	66698221	66698830	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1782	NM_178818	146223		NM_178818	ENSG00000183723	CMTM4	CKLFSF4	CKLF like MARVEL transmembrane domain containing 4	protein-coding
65914	chr14	55294451	55295000	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	22571	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
220279	chr8	97799301	97799500	+	0	NA	intron (NM_018407, intron 1 of 6)	LTR54|LTR|ERV1	23612	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
191020	chr6	3108321	3108700	+	0	NA	intron (NM_001354931, intron 8 of 9)	intron (NM_001354931, intron 8 of 9)	-9866	NR_026649	670		NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase like	protein-coding
94733	chr17	30779521	30779780	+	0	NA	intron (NR_144395, intron 8 of 9)	intron (NR_144395, intron 8 of 9)	45042	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
153759	chr22	29414851	29416000	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	-23158	NM_021026	5988		NM_021026	ENSG00000128250	RFPL1	RNF78	ret finger protein like 1	protein-coding
207498	chr7	44752321	44752580	+	0	NA	intron (NM_031449, intron 1 of 18)	L1MD1|LINE|L1	3603	NM_031449	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
205315	chr7	12239801	12240000	+	0	NA	3' UTR (NM_018374, exon 9 of 9)	3' UTR (NM_018374, exon 9 of 9)	28606	NM_001134232	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
154239	chr22	31592571	31593130	+	0	NA	intron (NM_001007467, intron 15 of 32)	SVA_F|Retroposon|SVA	28681	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
187016	chr5	139760351	139760650	+	0	NA	Intergenic	Intergenic	-14277	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
70026	chr14	100096201	100096700	+	0	NA	intron (NM_016337, intron 2 of 13)	MIRb|SINE|MIR	13064	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
10504	chr1	66728971	66729450	+	0	NA	intron (NM_001376546, intron 18 of 23)	intron (NM_001376546, intron 18 of 23)	-23249	NM_152665	200132		NM_152665	ENSG00000152760	DYNLT5	TCTEX1D1	dynein light chain Tctex-type family member 5	protein-coding
71728	chr15	20357551	20358300	+	0	NA	Intergenic	Intergenic	75181	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
97212	chr17	42762501	42762830	+	0	NA	exon (NM_005854, exon 4 of 4)	exon (NM_005854, exon 4 of 4)	-1408	NR_024462	100190938		NR_024461	ENSG00000197291	RAMP2-AS1	-	RAMP2 antisense RNA 1	ncRNA
31870	chr10	100174901	100175300	+	0	NA	intron (NM_006459, intron 5 of 10)	intron (NM_006459, intron 5 of 10)	10929	NM_001100626	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
236605	chrX	74290551	74291150	+	0	NA	intron (NR_028379, intron 1 of 6)	intron (NR_028379, intron 1 of 6)	2724	NR_028379	100302692		NR_028379	ENSG00000230590	FTX	LINC00182|MIR374AHG|NCRNA00182	FTX transcript, XIST regulator	ncRNA
86360	chr16	66539701	66540180	+	0	NA	intron (NM_001172644, intron 2 of 8)	MER68|LTR|ERVL	10182	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
198574	chr6	107318251	107318350	+	0	NA	intron (NM_020381, intron 2 of 7)	intron (NM_020381, intron 2 of 7)	141264	NM_020381	57107		NM_020381	ENSG00000164494	PDSS2	C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1	decaprenyl diphosphate synthase subunit 2	protein-coding
37311	chr11	14764021	14764280	+	0	NA	intron (NM_001363569, intron 1 of 15)	LTR33|LTR|ERVL	120346	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
184069	chr5	93571501	93572450	+	0	NA	promoter-TSS (NR_109825)	promoter-TSS (NR_109825)	-632	NR_109825	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
25814	chr10	11197351	11198100	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	32695	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
141701	chr2	241824771	241824930	+	0	NA	Intergenic	AluSx3|SINE|Alu	13454	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
183559	chr5	80137671	80137830	+	0	NA	TTS (NM_001174072)	TTS (NM_001174072)	-54085	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
172846	chr4	3245951	3246250	+	0	NA	intron (NM_001330620, intron 2 of 5)	intron (NM_001330620, intron 2 of 5)	1731	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
121092	chr19	45902201	45904150	+	0	NA	promoter-TSS (NM_001012643)	promoter-TSS (NM_001012643)	-562	NM_001012643	339344		NM_001012643	ENSG00000176182	MYPOP	P42pop	Myb related transcription factor, partner of profilin	protein-coding
89175	chr16	88549701	88551230	+	0	NA	Intergenic	Intergenic	11518	NR_146877	400555		NM_001001682		ZC3H18-AS1	C16orf85|LINC00859	ZC3H18 antisense RNA 1 (head to head)	ncRNA
239160	chrY	11687951	11688050	+	0	NA	Intergenic	Intergenic	733590	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
200742	chr6	137768121	137768700	+	0	NA	Intergenic	Intergenic	-29373	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
57247	chr12	121567421	121567680	+	0	NA	intron (NM_001005366, intron 4 of 22)	AluJo|SINE|Alu	12696	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
189208	chr5	171434351	171434900	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	14978	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
7110	chr1	32140271	32140430	+	0	NA	intron (NM_012316, intron 1 of 13)	AluSg|SINE|Alu	32294	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
177432	chr4	112520601	112521000	+	0	NA	intron (NR_161159, intron 1 of 3)	intron (NR_161159, intron 1 of 3)	-4620	NM_024019	63973		NM_024019	ENSG00000178403	NEUROG2	Atoh4|Math4A|NGN2|bHLHa8|ngn-2	neurogenin 2	protein-coding
450	chr1	1126671	1127030	+	0	NA	Intergenic	Intergenic	-10167	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
178624	chr4	152109571	152109730	+	0	NA	Intergenic	Intergenic	8832	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
76952	chr15	78105501	78106700	+	0	NA	intron (NM_001301224, intron 3 of 4)	intron (NM_001301224, intron 3 of 4)	13515	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
139666	chr2	226905171	226905530	+	0	NA	intron (NM_001349069, intron 5 of 8)	intron (NM_001349069, intron 5 of 8)	69296	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
83708	chr16	28496251	28497330	+	0	NA	exon (NM_018690, exon 2 of 4)	exon (NM_018690, exon 2 of 4)	2147	NM_018690	55911		NM_018690	ENSG00000184730	APOBR	APOB100R|APOB48R	apolipoprotein B receptor	protein-coding
222275	chr8	133294671	133295690	+	0	NA	intron (NM_001374844, intron 1 of 15)	intron (NM_001374844, intron 1 of 15)	1510	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
184363	chr5	97142621	97142980	+	0	NA	promoter-TSS (NM_153234)	promoter-TSS (NM_153234)	-189	NM_153234	167410		NM_153234	ENSG00000145721	LIX1	C5orf11|Lft	limb and CNS expressed 1	protein-coding
210486	chr7	100163151	100164100	+	0	NA	intron (NM_024637, intron 3 of 3)	AluJo|SINE|Alu	-4902	NM_018275	55262		NM_018275	ENSG00000146826	TRAPPC14	C7orf43|MAP11|MCPH25	trafficking protein particle complex subunit 14	protein-coding
207466	chr7	44612521	44612980	+	0	NA	intron (NM_001363523, intron 1 of 23)	AluJo|SINE|Alu	6123	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
82517	chr16	17557521	17557880	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-86740	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
204419	chr7	3107551	3107850	+	0	NA	Intergenic	Intergenic	50873	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
134417	chr2	143068351	143068700	+	0	NA	Intergenic	L1MD2|LINE|L1	-60894	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
121149	chr19	46320151	46320250	+	0	NA	intron (NM_022462, intron 7 of 13)	AluSx|SINE|Alu	16581	NM_152794	64344		NM_022462	ENSG00000124440	HIF3A	HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3 subunit alpha	protein-coding
23522	chr1	229059751	229060250	+	0	NA	Intergenic	Intergenic	114801	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
169910	chr3	177680771	177681130	+	0	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-135915	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
215505	chr7	158664421	158664680	+	0	NA	exon (NM_001281933, exon 14 of 28)	exon (NM_001281933, exon 14 of 28)	40254	NM_001281932	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
117238	chr19	19429251	19429430	+	0	NA	intron (NM_001384517, intron 2 of 12)	L2b|LINE|L2	-5723	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
196262	chr6	42926901	42927500	+	0	NA	promoter-TSS (NR_134881)	promoter-TSS (NR_134881)	-802	NR_134881	10695		NM_006586	ENSG00000137161	CNPY3	CAG4A|DEE60|EIEE60|ERDA5|PRAT4A|TNRC5	canopy FGF signaling regulator 3	protein-coding
151700	chr22	17299201	17299400	+	0	NA	Intergenic	L1PA6|LINE|L1	-32567	NR_038398	27442		NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3	ncRNA
17540	chr1	156793071	156793630	+	0	NA	intron (NM_005973, intron 4 of 6)	intron (NM_005973, intron 4 of 6)	-22400	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
98051	chr17	45441901	45442730	+	0	NA	intron (NM_014798, intron 9 of 11).3	L2c|LINE|L2	-9445	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
168249	chr3	141401921	141404950	+	0	NA	intron (NM_001376188, intron 1 of 2)	MER112|DNA|hAT-Charlie	421	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
64684	chr14	32233071	32233460	+	0	NA	Intergenic	Intergenic	-29996	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
178723	chr4	152806271	152806430	+	0	NA	intron (NM_001287432, intron 2 of 9)	intron (NM_001287432, intron 2 of 9)	26396	NM_001025595	27236		NM_014447	ENSG00000164144	ARFIP1	HSU52521	ADP ribosylation factor interacting protein 1	protein-coding
134591	chr2	144278951	144279830	+	0	NA	intron (NM_001376309, intron 1 of 12)	(A)n|Simple_repeat|Simple_repeat	15085	NM_001376328	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
206101	chr7	27204271	27204430	+	0	NA	intron (NR_037843, intron 2 of 2)	intron (NR_037843, intron 2 of 2)	3929	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
153931	chr22	30332721	30332980	+	0	NA	3' UTR (NM_005877, exon 16 of 16)	3' UTR (NM_005877, exon 16 of 16)	-5909	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
90297	chr17	1053071	1053230	+	0	NA	intron (NM_001282149, intron 9 of 17).3	intron (NM_001282149, intron 9 of 17).3	-21319	NM_001256847	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
161324	chr3	39415901	39416650	+	0	NA	Intergenic	MIRb|SINE|MIR	5221	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
11198	chr1	88608251	88608680	+	0	NA	intron (NR_110682, intron 1 of 3)	intron (NR_110682, intron 1 of 3)	-75679	NM_001320707	5586		NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
221999	chr8	130012351	130012780	+	0	NA	intron (NM_001353269, intron 1 of 10)	MIRb|SINE|MIR	3995	NM_001353262	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
111888	chr19	4666521	4666780	+	0	NA	intron (NM_019107, intron 2 of 5)	L1ME4b|LINE|L1	3692	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
12433	chr1	103524071	103524230	+	0	NA	intron (NR_168319, intron 1 of 5)	L2|LINE|L2	1358	NR_168321	101928436		NM_001286997	ENSG00000224613	RNPC3-DT	-	RNPC3 divergent transcript	ncRNA
123168	chr19	52227401	52227600	+	0	NA	non-coding (NR_033500, exon 14 of 14)	non-coding (NR_033500, exon 14 of 14)	5480	NR_106859	102466984		NR_106859	ENSG00000274380	MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
105285	chr17	82485301	82485500	+	0	NA	intron (NM_031968, intron 10 of 11)	AluYj4|SINE|Alu	26659	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
143930	chr20	32740451	32740550	+	0	NA	intron (NM_053041, intron 1 of 8)	Tigger3c|DNA|TcMar-Tigger	2967	NM_001099339	149951		NM_053041	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
118818	chr19	38553251	38553550	+	0	NA	intron (NM_000540, intron 89 of 105)	AluJr|SINE|Alu	-42947	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
158898	chr3	9933401	9935730	+	0	NA	TTS (NM_001367280)	TTS (NM_001367280)	514	NM_001374318	78987		NM_015513	ENSG00000163703	CRELD1	AVSD2|CIRRIN|JELANS	cysteine rich with EGF like domains 1	protein-coding
199987	chr6	127997521	127998180	+	0	NA	intron (NM_001291981, intron 18 of 32).2	intron (NM_001291981, intron 18 of 32).2	-30015	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
83342	chr16	25018851	25019500	+	0	NA	Intergenic	Intergenic	-3806	NM_018054	55114		NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
15899	chr1	151561301	151561700	+	0	NA	intron (NM_001126337, intron 1 of 11)	(CA)n|Simple_repeat|Simple_repeat	15704	NR_030280	693139		NR_030280	ENSG00000207606	MIR554	MIRN554|hsa-mir-554	microRNA 554	ncRNA
11891	chr1	93176051	93176830	+	0	NA	intron (NR_030761, intron 1 of 4)	intron (NR_030761, intron 1 of 4)	3973	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
5154	chr1	24915221	24916950	+	0	NA	intron (NM_001031680, intron 4 of 5)	intron (NM_001031680, intron 4 of 5)	3331	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
11405	chr1	89698421	89699000	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	65590	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
108452	chr18	70205301	70206350	+	0	NA	promoter-TSS (NM_001318520)	promoter-TSS (NM_001318520)	-138	NM_173630	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
122451	chr19	49498601	49499600	+	0	NA	intron (NM_001015, intron 4 of 4)	L2b|LINE|L2	1381	NR_001285	84546		NR_001285	ENSG00000200530	SNORD35B	RNU35B|U35B	small nucleolar RNA, C/D box 35B	snoRNA
93526	chr17	19031721	19031980	+	0	NA	intron (NM_006613, intron 3 of 4)	intron (NM_006613, intron 3 of 4)	15107	NM_006613	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
97724	chr17	44359571	44359730	+	0	NA	exon (NM_198475, exon 3 of 8)	exon (NM_198475, exon 3 of 8)	4203	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
112404	chr19	6162371	6162550	+	0	NA	intron (NM_030924, intron 6 of 14)	AluY|SINE|Alu	26793	NM_001289179	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
167820	chr3	133591271	133591980	+	0	NA	Intergenic	L1MB7|LINE|L1	17191	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
25037	chr10	3761251	3761950	+	0	NA	Intergenic	Intergenic	23609	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
71830	chr15	22179121	22180380	+	0	NA	Intergenic	Intergenic	-1154	NR_135666	646370		NR_135666		IGHV1OR15-3	IGHV1OR153	immunoglobulin heavy variable 1/OR15-3 (pseudogene)	pseudo
106063	chr18	9105521	9106200	+	0	NA	intron (NM_021074, intron 1 of 7)	L1MEf|LINE|L1	3161	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
154167	chr22	31295501	31296080	+	0	NA	Intergenic	Intergenic	-3256	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
219761	chr8	81090471	81091350	+	0	NA	intron (NM_018440, intron 1 of 8)	L2c|LINE|L2	21158	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
139912	chr2	230737471	230737630	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	24002	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
192991	chr6	28130621	28130950	+	0	NA	TTS (NM_001320555)	TTS (NM_001320555)	6176	NM_001320556	80345		NM_025231	ENSG00000196812	ZSCAN16	ZNF392|ZNF435|dJ265C24.3	zinc finger and SCAN domain containing 16	protein-coding
125359	chr2	11103701	11104900	+	0	NA	intron (NR_040080, intron 8 of 8)	intron (NR_040080, intron 8 of 8)	27876	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
52096	chr12	54125651	54127900	+	0	NA	intron (NR_026656, intron 1 of 1)	intron (NR_026656, intron 1 of 1)	704	NR_026656	400043		NR_026656	ENSG00000250742	LINC02381	HMS|lncEPAT	long intergenic non-protein coding RNA 2381	ncRNA
76617	chr15	75448871	75449030	+	0	NA	intron (NM_001145357, intron 1 of 20)	intron (NM_001145357, intron 1 of 20)	2740	NM_015477	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
190647	chr5	181233251	181233900	+	0	NA	intron (NM_201627, intron 4 of 7)	intron (NM_201627, intron 4 of 7)	8314	NR_002592	619571		NR_002592	ENSG00000272296	SNORD96A	U96A	small nucleolar RNA, C/D box 96A	snoRNA
86025	chr16	57519501	57520200	+	0	NA	intron (NM_033212, intron 4 of 8)	intron (NM_033212, intron 4 of 8)	16721	NM_033212	92922		NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
80471	chr16	2698351	2698650	+	0	NA	intron (NM_018992, intron 3 of 5)	intron (NM_018992, intron 3 of 5)	15977	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
115039	chr19	14115701	14115900	+	0	NA	intron (NM_002730, intron 1 of 9)	intron (NM_002730, intron 1 of 9)	-1609	NM_207518	5566		NM_002730	ENSG00000072062	PRKACA	CAFD1|PKACA|PPNAD4	protein kinase cAMP-activated catalytic subunit alpha	protein-coding
56465	chr12	116061921	116062180	+	0	NA	intron (NM_015335, intron 4 of 30)	intron (NM_015335, intron 4 of 30)	86604	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
164775	chr3	69160121	69160380	+	0	NA	Intergenic	Intergenic	-37655	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
217808	chr8	33599351	33599950	+	0	NA	intron (NM_024025, intron 1 of 3)	CpG	373	NM_024025	78986		NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding
139283	chr2	219506301	219506700	+	0	NA	intron (NM_205847, intron 12 of 12)	intron (NM_205847, intron 12 of 12)	7609	NM_205847	29926		NM_013335	ENSG00000144591	GMPPA	AAMR	GDP-mannose pyrophosphorylase A	protein-coding
21790	chr1	206967321	206967780	+	0	NA	intron (NM_032029, intron 2 of 6)	MIRb|SINE|MIR	2910	NM_001122979	83953		NM_032029	ENSG00000162897	FCAMR	CD351|FCA/MR|FKSG87|Fcalpha/muR	Fc alpha and mu receptor	protein-coding
140017	chr2	231032621	231032880	+	0	NA	Intergenic	Intergenic	-4773	NM_001144994	257407		NM_001144994	ENSG00000204128	C2orf72	-	chromosome 2 open reading frame 72	protein-coding
220246	chr8	97560151	97560400	+	0	NA	Intergenic	Intergenic	-83909	NM_178812	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
200597	chr6	136647321	136648580	+	0	NA	non-coding (NR_125858, exon 3 of 3)	non-coding (NR_125858, exon 3 of 3)	18836	NR_125858	101928461		NR_125858	ENSG00000234263	MAP3K5-AS1	-	MAP3K5 antisense RNA 1	ncRNA
226917	chr9	79577571	79577730	+	0	NA	intron (NM_001351556, intron 4 of 18)	intron (NM_001351556, intron 4 of 18)	4473	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
130599	chr2	85885371	85885530	+	0	NA	intron (NM_001354229, intron 1 of 7)	intron (NM_001354229, intron 1 of 7)	2099	NM_001354238	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
39747	chr11	61828741	61829680	+	0	NA	intron (NM_004265, intron 1 of 11)	CpG	910	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
223979	chr9	2026321	2027350	+	0	NA	intron (NM_001289396, intron 1 of 33)	intron (NM_001289396, intron 1 of 33)	4890	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
101538	chr17	67942901	67943100	+	0	NA	intron (NM_182641, intron 19 of 27)	intron (NM_182641, intron 19 of 27)	50606	NM_181656	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
87383	chr16	70452721	70452980	+	0	NA	Intergenic	Intergenic	-1745	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
28993	chr10	63273371	63274280	+	0	NA	intron (NM_001322258, intron 2 of 24)	intron (NM_001322258, intron 2 of 24)	-4582	NM_001322254	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
170340	chr3	184513521	184514580	+	0	NA	Intergenic	CpG	42868	NR_046593	100874079		NR_046593	ENSG00000230215	LINC01840	EIF2B5-AS1	long intergenic non-protein coding RNA 1840	ncRNA
56490	chr12	116248821	116249280	+	0	NA	intron (NM_015335, intron 1 of 30)	L1MEc|LINE|L1	28643	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
84269	chr16	30054851	30055700	+	0	NA	exon (NM_001365307, exon 3 of 13)	exon (NM_001365307, exon 3 of 13)	2124	NM_001365307	112694756		NM_001365304	ENSG00000285043	LOC112694756	ALDA|ALDOA	uncharaterized LOC112694756	protein-coding
28822	chr10	62306701	62307050	+	0	NA	Intergenic	LTR1D1|LTR|ERV1	-38031	NM_145307	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
209214	chr7	75452351	75453150	+	0	NA	intron (NR_160303, intron 4 of 4)	intron (NR_160303, intron 4 of 4)	33549	NR_160304	100101267		NM_001099415	ENSG00000272391	POM121C	POM121-2	POM121 transmembrane nucleoporin C	protein-coding
170875	chr3	192898751	192899250	+	0	NA	intron (NM_178496, intron 1 of 1)	L2b|LINE|L2	18856	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
70396	chr14	101963621	101964900	+	0	NA	promoter-TSS (NM_001376)	promoter-TSS (NM_001376)	-313	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
219490	chr8	73877951	73879550	+	0	NA	promoter-TSS (NR_147034)	promoter-TSS (NR_147034)	112	NR_073120	55284		NM_018299	ENSG00000104343	UBE2W	UBC-16|UBC16	ubiquitin conjugating enzyme E2 W	protein-coding
21765	chr1	206915251	206915630	+	0	NA	intron (NM_001193338, intron 1 of 6)	intron (NM_001193338, intron 1 of 6)	6501	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
152016	chr22	19424671	19424830	+	0	NA	intron (NM_003325, intron 1 of 24)	MIRc|SINE|MIR	6983	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
112096	chr19	5567621	5568280	+	0	NA	promoter-TSS (NR_027064)	promoter-TSS (NR_027064)	84	NR_027064								
200411	chr6	134542871	134543350	+	0	NA	Intergenic	L2c|LINE|L2	-3105	NR_125856	101928304		NR_125855	ENSG00000232310	LINC03002	-	long intergenic non-protein coding RNA 3002	ncRNA
137822	chr2	200425051	200425350	+	0	NA	intron (NM_001100424, intron 6 of 11)	intron (NM_001100424, intron 6 of 11)	84868	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
215932	chr8	8301521	8301980	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	73180	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
49509	chr12	25352151	25352450	+	0	NA	Intergenic	L1P4|LINE|L1	-101371	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
103727	chr17	78843071	78843700	+	0	NA	Intergenic	Intergenic	-1946	NM_001385176	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
178170	chr4	142372201	142373200	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	30433	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
233729	chrX	1360751	1361250	+	0	NA	intron (NM_001267713, intron 6 of 9).2	intron (NM_001267713, intron 6 of 9).2	24215	NM_002183	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
60707	chr13	44086471	44086630	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-23999	NR_104065	101929212		NR_104064	ENSG00000227258	SMIM2-AS1	C13orf44-AS1|C3orf81-AS1	SMIM2 antisense RNA 1	ncRNA
194482	chr6	33241501	33242300	+	0	NA	Intergenic	Intergenic	-7636	NR_044997	414765		NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25	ncRNA
109017	chr18	79718221	79718530	+	0	NA	intron (NM_048368, intron 10 of 11)	intron (NM_048368, intron 10 of 11)	36945	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
239019	chrY	2937671	2938450	+	0	NA	intron (NM_001369710, intron 1 of 4)	AluY|SINE|Alu	2679	NM_001369702	7544		NM_003411	ENSG00000067646	ZFY	ZNF911	zinc finger protein Y-linked	protein-coding
32442	chr10	102610421	102610680	+	0	NA	intron (NM_001178133, intron 8 of 10)	L3|LINE|CR1	-33929	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
9396	chr1	47436221	47437000	+	0	NA	intron (NR_126355, intron 1 of 4)	MIR|SINE|MIR	707	NR_126355	102724077		NR_126355		LINC01389	-	long intergenic non-protein coding RNA 1389	ncRNA
41622	chr11	66438221	66439680	+	0	NA	promoter-TSS (NM_016050)	promoter-TSS (NM_016050)	-102	NR_120589	65003		NM_016050	ENSG00000174547	MRPL11	CGI-113|L11MT|MRP-L11|uL11m	mitochondrial ribosomal protein L11	protein-coding
98826	chr17	48412301	48412500	+	0	NA	intron (NM_001075099, intron 1 of 12)	intron (NM_001075099, intron 1 of 12)	17814	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
229963	chr9	126706271	126707030	+	0	NA	Intergenic	Intergenic	92722	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
123072	chr19	51375401	51376400	+	0	NA	Intergenic	AluSp|SINE|Alu	-3246	NM_005601	4818		NM_005601	ENSG00000105374	NKG7	GIG1|GMP-17|p15-TIA-1	natural killer cell granule protein 7	protein-coding
26849	chr10	24865221	24865550	+	0	NA	intron (NM_020200, intron 4 of 8)	intron (NM_020200, intron 4 of 8)	87221	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
156925	chr22	42297201	42297400	+	0	NA	Intergenic	Intergenic	-13373	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
95803	chr17	38729771	38731530	+	0	NA	TTS (NM_005937)	TTS (NM_005937)	309	NM_001136498	284106		NM_001136498	ENSG00000277972	CISD3	MiNT|Miner2	CDGSH iron sulfur domain 3	protein-coding
59607	chr13	27789151	27790180	+	0	NA	Intergenic	CpG	-2818	NM_145657	219409		NM_145657	ENSG00000169840	GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
239313	chrY	17459721	17460000	+	0	NA	Intergenic	Intergenic	-41098	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
18132	chr1	160741171	160741680	+	0	NA	intron (NM_001282590, intron 1 of 5)	intron (NM_001282590, intron 1 of 5)	2178	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
47181	chr12	794921	795980	+	0	NA	intron (NM_018979, intron 1 of 27)	THE1B|LTR|ERVL-MaLR	42527	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
224271	chr9	6079851	6080780	+	0	NA	Intergenic	Intergenic	-64691	NM_001243203	26953		NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
102894	chr17	76530601	76531000	+	0	NA	intron (NM_134268, intron 3 of 3)	intron (NM_134268, intron 3 of 3)	3214	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
112068	chr19	5204151	5204450	+	0	NA	Intergenic	Intergenic	136512	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
67578	chr14	71574551	71575100	+	0	NA	intron (NM_001354289, intron 5 of 23)	intron (NM_001354289, intron 5 of 23)	-11473	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
147115	chr20	53934271	53935480	+	0	NA	Intergenic	Intergenic	-59166	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
180061	chr5	1089871	1090030	+	0	NA	intron (NM_006598, intron 3 of 23).2	intron (NM_006598, intron 3 of 23).2	22113	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
15525	chr1	150513401	150513800	+	0	NA	3' UTR (NM_001202858, exon 10 of 10)	3' UTR (NM_001202858, exon 10 of 10)	-2157	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
7456	chr1	33080521	33082950	+	0	NA	promoter-TSS (NM_001350402)	promoter-TSS (NM_001350402)	-443	NM_001350402	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
66949	chr14	65821221	65821480	+	0	NA	Intergenic	Intergenic	350248	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
150231	chr21	41316651	41316950	+	0	NA	promoter-TSS (NM_058186)	promoter-TSS (NM_058186)	-1	NM_206964	54097		NM_058186	ENSG00000183844	FAM3B	2-21|C21orf11|C21orf76|ORF9|PANDER|PRED44	FAM3 metabolism regulating signaling molecule B	protein-coding
140230	chr2	231735021	231735330	+	0	NA	intron (NM_001291018, intron 3 of 3)	AluY|SINE|Alu	21861	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
47888	chr12	6708521	6709380	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8135	NM_153685	196500		NM_153685	ENSG00000139200	PIANP	C12orf53|LEDA1|PANP|leda-1	PILR alpha associated neural protein	protein-coding
109384	chr19	654771	654930	+	0	NA	intron (NM_194460, intron 1 of 8)	AluSx|SINE|Alu	8364	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
8730	chr1	42684221	42685380	+	0	NA	intron (NM_004559, intron 2 of 7)	intron (NM_004559, intron 2 of 7)	1664	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
235494	chrX	47091051	47091600	+	0	NA	intron (NM_004683, intron 4 of 6)	intron (NM_004683, intron 4 of 6)	12882	NM_152869	9104		NM_004683	ENSG00000130988	RGN	GNL|HEL-S-41|RC|SMP30	regucalcin	protein-coding
40125	chr11	62826701	62827300	+	0	NA	intron (NM_001244666, intron 5 of 10)	FRAM|SINE|Alu	5051	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
184110	chr5	94103701	94104100	+	0	NA	intron (NR_028080, intron 1 of 8)	L1PA15|LINE|L1	7763	NM_032042	83989		NM_032042	ENSG00000113391	ARB2A	C5orf21|FAM172A|Toupee	ARB2 cotranscriptional regulator A	protein-coding
133643	chr2	127044971	127045130	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	37015	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
168276	chr3	141486621	141487300	+	0	NA	promoter-TSS (NM_001303245)	promoter-TSS (NM_001303245)	-67	NM_001303246	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
230188	chr9	127796921	127798180	+	0	NA	Intergenic	AluSg|SINE|Alu	-5308	NM_001288803	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
70851	chr14	103703771	103704480	+	0	NA	intron (NM_001371232, intron 6 of 9)	L1MB3|LINE|L1	11326	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
72744	chr15	39580151	39582400	+	0	NA	intron (NM_003246, intron 1 of 21)	CpG	196	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
115333	chr19	15127121	15127380	+	0	NA	Intergenic	AluJb|SINE|Alu	-1464	NM_006844	10994		NM_006844	ENSG00000105135	ILVBL	209L8|AHAS|HACL1L|HACL2|ILV2H	ilvB acetolactate synthase like	protein-coding
96404	chr17	40146071	40146430	+	0	NA	intron (NM_007359, intron 3 of 13)	L2b|LINE|L2	5713	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
68893	chr14	91338001	91338400	+	0	NA	intron (NM_001080414, intron 9 of 29)	intron (NM_001080414, intron 9 of 29)	79620	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
121176	chr19	46478171	46478680	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6862	NM_018215	55228		NM_018215	ENSG00000182013	PNMA8A	PNMAL1	PNMA family member 8A	protein-coding
124455	chr19	58516251	58516550	+	0	NA	exon (NM_001316978, exon 2 of 3)	exon (NM_001316978, exon 2 of 3)	3202	NM_001316978	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
125053	chr2	9616671	9617050	+	0	NA	intron (NM_006826, intron 2 of 5)	L1MB3|LINE|L1	14137	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
35660	chr11	1864371	1864530	+	0	NA	promoter-TSS (NM_001242932)	promoter-TSS (NM_001242932)	-715	NM_001242932	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
221670	chr8	126068471	126069030	+	0	NA	Intergenic	Intergenic	-117553	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
68922	chr14	91369821	91370530	+	0	NA	intron (NM_001080414, intron 3 of 29)	MIR3|SINE|MIR	47645	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
106369	chr18	13277401	13277600	+	0	NA	5' UTR (NM_001378099, exon 1 of 7)	5' UTR (NM_001378099, exon 1 of 7)	138	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
236367	chrX	70890601	70890800	+	0	NA	intron (NM_031276, intron 2 of 29)	L1PA8|LINE|L1	18011	NM_001003811	56159		NM_031276	ENSG00000120498	TEX11	MZIP4|SPGFX2|Spo22|TGC1|TSGA3|ZIP4|ZIP4H	testis expressed 11	protein-coding
175477	chr4	73085621	73086000	+	0	NA	intron (NM_032217, intron 29 of 33)	AluJb|SINE|Alu	-16051	NM_001300729	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
159434	chr3	13651551	13652230	+	0	NA	intron (NR_027103, intron 1 of 5)	MIRc|SINE|MIR	1169	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
140384	chr2	233065351	233065650	+	0	NA	intron (NM_001017915, intron 1 of 26).2	AluSx1|SINE|Alu	5158	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
132595	chr2	108350001	108350250	+	0	NA	intron (NR_037191, intron 3 of 3)	intron (NR_037191, intron 3 of 3)	-27829	NM_006588	27233		NM_006588	ENSG00000198075	SULT1C4	SULT1C|SULT1C2	sulfotransferase family 1C member 4	protein-coding
109230	chr19	495401	496400	+	0	NA	promoter-TSS (NM_130762)	promoter-TSS (NM_130762)	-586	NM_130762	8174		NM_130760	ENSG00000099866	MADCAM1	MACAM1	mucosal vascular addressin cell adhesion molecule 1	protein-coding
195756	chr6	40375921	40376380	+	0	NA	Intergenic	L1MB5|LINE|L1	-2187	NR_160960	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
133744	chr2	127465201	127465400	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-41682	NR_039944	100616187		NR_039944	ENSG00000264075	MIR4783	-	microRNA 4783	ncRNA
167571	chr3	129429701	129430330	+	0	NA	TTS (NM_001276273)	TTS (NM_001276273)	-1379	NM_207307	90288		NM_207307	ENSG00000172771	EFCAB12	C3orf25	EF-hand calcium binding domain 12	protein-coding
33066	chr10	110881251	110881580	+	0	NA	exon (NM_001199492, exon 3 of 12)	exon (NM_001199492, exon 3 of 12)	9487	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
108920	chr18	79445171	79445330	+	0	NA	intron (NM_172389, intron 3 of 9)	intron (NM_172389, intron 3 of 9)	44951	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
41275	chr11	65847721	65848700	+	0	NA	intron (NM_152760, intron 1 of 12)	intron (NM_152760, intron 1 of 12)	9970	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
70158	chr14	100298951	100299450	+	0	NA	intron (NM_001352821, intron 1 of 4)	intron (NM_001352821, intron 1 of 4)	7244	NM_001291814	123096		NM_152333	ENSG00000197119	SLC25A29	C14orf69|CACL|ORNT3	solute carrier family 25 member 29	protein-coding
53031	chr12	57603121	57603780	+	0	NA	TTS (NM_024779)	TTS (NM_024779)	-1374	NM_001286245	196403		NM_178502	ENSG00000178498	DTX3	RNF154|deltex3	deltex E3 ubiquitin ligase 3	protein-coding
35695	chr11	1919521	1920180	+	0	NA	intron (NM_001363561, intron 1 of 16)	intron (NM_001363561, intron 1 of 16)	147	NM_006757	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
129362	chr2	68778621	68779130	+	0	NA	intron (NM_001364820, intron 2 of 9)	intron (NM_001364820, intron 2 of 9)	3965	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
9588	chr1	52053701	52053900	+	0	NA	intron (NR_046406, intron 1 of 2)	L2a|LINE|L2	1391	NM_015913	51060		NM_015913	ENSG00000117862	TXNDC12	AG1|AGR1|ERP16|ERP18|ERP19|PDIA16|TLP19|hAG-1|hTLP19	thioredoxin domain containing 12	protein-coding
144813	chr20	36754371	36755000	+	0	NA	intron (NM_001145318, intron 9 of 9)	intron (NM_001145318, intron 9 of 9)	-8595	NM_032013	57446		NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
172879	chr4	3385371	3385530	+	0	NA	intron (NM_198227, intron 1 of 15)	intron (NM_198227, intron 1 of 15)	15252	NM_198227	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
180438	chr5	10537071	10537330	+	0	NA	Intergenic	Intergenic	-15116	NR_134289	389273		NR_134289	ENSG00000249160	LINC02213	-	long intergenic non-protein coding RNA 2213	ncRNA
25007	chr10	3224971	3225130	+	0	NA	Intergenic	(ATGGTG)n|Simple_repeat|Simple_repeat	-23964	NR_164118	105376353		NR_164118		LOC105376353	-	mucin-5AC-like	ncRNA
110890	chr19	2700001	2700200	+	0	NA	intron (NM_052847, intron 1 of 4)	(ATA)n|Simple_repeat|Simple_repeat	2594	NM_052847	2788		NM_052847	ENSG00000176533	GNG7	HG3B	G protein subunit gamma 7	protein-coding
185572	chr5	131384071	131384430	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	120197	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
150810	chr21	43949571	43950000	+	0	NA	intron (NM_001037553, intron 1 of 8)	L1M5|LINE|L1	24387	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
218945	chr8	60947351	60947650	+	0	NA	Intergenic	Intergenic	20248	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
11435	chr1	89780751	89781130	+	0	NA	Intergenic	AluJr|SINE|Alu	-40092	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
149622	chr21	33399621	33399880	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-3146	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
6435	chr1	28230751	28231150	+	0	NA	intron (NR_159454, intron 1 of 9)	intron (NR_159454, intron 1 of 9)	2079	NM_014280	22826		NM_014280	ENSG00000126698	DNAJC8	HSPC331|SPF31	DnaJ heat shock protein family (Hsp40) member C8	protein-coding
12403	chr1	101308601	101311080	+	0	NA	Intergenic	Intergenic	-13997	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
193742	chr6	31263251	31263850	+	0	NA	Intergenic	MER11A|LTR|ERVK	8542	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
153654	chr22	28804651	28805150	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4328	NM_005080	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
9478	chr1	50969301	50971100	+	0	NA	promoter-TSS (NM_078626)	promoter-TSS (NM_078626)	-45	NM_078626	1031		NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	cyclin dependent kinase inhibitor 2C	protein-coding
66146	chr14	60266021	60266650	+	0	NA	intron (NM_177951, intron 2 of 3)	L1M6|LINE|L1	17114	NM_021003	5494		NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
112431	chr19	6281221	6281650	+	0	NA	Intergenic	L1MA7|LINE|L1	-1460	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
140536	chr2	233247351	233248130	+	0	NA	Intergenic	Intergenic	-3831	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
228127	chr9	96655101	96656330	+	0	NA	promoter-TSS (NM_153698)	promoter-TSS (NM_153698)	-398	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
6762	chr1	30740421	30741780	+	0	NA	intron (NM_006762, intron 3 of 7)	L2b|LINE|L2	-1868	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
170454	chr3	185915371	185916280	+	0	NA	3' UTR (NM_004593, exon 9 of 9)	3' UTR (NM_004593, exon 9 of 9)	22189	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
161024	chr3	37956871	37957430	+	0	NA	intron (NM_001008392, intron 3 of 7)	intron (NM_001008392, intron 3 of 7)	-12254	NR_029499	407015		NR_029499	ENSG00000199075	MIR26A1	MIR26A|MIRN26A1|mir-26a-1	microRNA 26a-1	ncRNA
153904	chr22	30306001	30307630	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	-17310	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
52927	chr12	57263651	57264550	+	0	NA	intron (NM_001351209, intron 19 of 23)	AluSg|SINE|Alu	-12913	NM_001286257	246329		NM_145064	ENSG00000185482	STAC3	CMYP13|MYPBB|NAM	SH3 and cysteine rich domain 3	protein-coding
140811	chr2	236503171	236503330	+	0	NA	intron (NM_024726, intron 1 of 18)	intron (NM_024726, intron 1 of 18)	447	NM_001270585	79781		NM_024726	ENSG00000132321	IQCA1	4930465P12Rik|DRC11|IQCA	IQ motif containing with AAA domain 1	protein-coding
206134	chr7	27664571	27664730	+	0	NA	Intergenic	Intergenic	-1767	NM_152740	11112		NM_152740	ENSG00000106049	HIBADH	NS5ATP1	3-hydroxyisobutyrate dehydrogenase	protein-coding
166856	chr3	123335151	123335250	+	0	NA	intron (NM_183357, intron 3 of 20)	MER74A|LTR|ERVL	81142	NM_001199642	111		NM_183357	ENSG00000173175	ADCY5	AC5|DSKOD|FDFM	adenylate cyclase 5	protein-coding
141633	chr2	241700971	241701500	+	0	NA	promoter-TSS (NM_001330162)	promoter-TSS (NM_001330162)	-804	NM_032329	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
33710	chr10	121598171	121598620	+	0	NA	promoter-TSS (NM_000141)	promoter-TSS (NM_000141)	49	NM_001320658	2263		NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
168570	chr3	148990201	148990450	+	0	NA	Intergenic	Intergenic	-1083	NM_001184721	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
107921	chr18	57621391	57622950	+	0	NA	promoter-TSS (NM_004539)	promoter-TSS (NM_004539)	-334	NM_004539	4677		NM_004539	ENSG00000134440	NARS1	ASNRS|NARS|NEDMILEG|NEDMILG	asparaginyl-tRNA synthetase 1	protein-coding
74327	chr15	58474801	58475000	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	23835	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
220273	chr8	97773321	97773780	+	0	NA	Intergenic	AluSp|SINE|Alu	-2238	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
46266	chr11	124760321	124760950	+	0	NA	intron (NR_120577, intron 1 of 1)	intron (NR_120577, intron 1 of 1)	1501	NR_120577	101929340		NR_120577	ENSG00000250073	ESAM-AS1	-	ESAM antisense RNA 1	ncRNA
100622	chr17	63593321	63593700	+	0	NA	3' UTR (NM_005828, exon 7 of 7)	3' UTR (NM_005828, exon 7 of 7)	-7385	NM_016360	51204		NM_016360	ENSG00000136463	TACO1	CCDC44|MC4DN8	translational activator of cytochrome c oxidase I	protein-coding
153753	chr22	29385971	29386800	+	0	NA	intron (NM_001378564, intron 1 of 20)	intron (NM_001378564, intron 1 of 20)	2185	NM_001378565	162		NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2|KIDAR	adaptor related protein complex 1 subunit beta 1	protein-coding
88671	chr16	85675501	85675700	+	0	NA	TTS (NM_016095)	TTS (NM_016095)	13354	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
47463	chr12	3870871	3871030	+	0	NA	intron (NM_001286522, intron 1 of 7)	intron (NM_001286522, intron 1 of 7)	2449	NM_001286522	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
151185	chr21	45078201	45079680	+	0	NA	intron (NM_001346688, intron 1 of 11)	MIR|SINE|MIR	3889	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
127258	chr2	38702221	38702800	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	36396	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
179251	chr4	174522051	174523180	+	0	NA	promoter-TSS (NM_000860)	promoter-TSS (NM_000860)	-127	NM_000860	3248		NM_000860	ENSG00000164120	HPGD	15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1	15-hydroxyprostaglandin dehydrogenase	protein-coding
191577	chr6	12012501	12013830	+	0	NA	intron (NM_002114, intron 1 of 8)	intron (NM_002114, intron 1 of 8)	853	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
154233	chr22	31561201	31561500	+	0	NA	exon (NM_014775, exon 8 of 32)	exon (NM_014775, exon 8 of 32)	60181	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
62650	chr13	102192201	102192420	+	0	NA	intron (NM_175929, intron 1 of 4)	MLT1A-int|LTR|ERVL-MaLR	118376	NM_001321933	2259		NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|NYS4|SCA27|SCA27A|SCA27B	fibroblast growth factor 14	protein-coding
184063	chr5	92301151	92301250	+	0	NA	Intergenic	L1PA2|LINE|L1	-917883	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
53873	chr12	70253771	70254350	+	0	NA	intron (NR_037615, intron 1 of 16)	AluSc8|SINE|Alu	10346	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
83738	chr16	28615771	28616250	+	0	NA	intron (NM_177536, intron 2 of 5)	LTR13|LTR|ERVK	-5966	NM_177529	6817		NM_001055	ENSG00000196502	SULT1A1	HAST1/HAST2|P-PST|P-PST 1|PST|ST1A1|ST1A3|STP|STP1|TSPST1|ts-PST	sulfotransferase family 1A member 1	protein-coding
185465	chr5	131278081	131280130	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	15052	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
7113	chr1	32142371	32143280	+	0	NA	intron (NM_012316, intron 1 of 13)	intron (NM_012316, intron 1 of 13)	34769	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
109536	chr19	861771	863200	+	0	NA	intron (NM_001928, intron 4 of 4).2	G-rich|Low_complexity|Low_complexity	2821	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
141734	chr2	241872871	241873030	+	0	NA	exon (NM_173821, exon 2 of 2)	exon (NM_173821, exon 2 of 2)	3221	NM_173821	285093		NM_173821	ENSG00000188011	RTP5	C2orf85|CXXC11|Z3CXXC5	receptor transporter protein 5 (putative)	protein-coding
77657	chr15	85532801	85533000	+	0	NA	intron (NM_007200, intron 3 of 36)	intron (NM_007200, intron 3 of 36)	-87050	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
99445	chr17	50133451	50133850	+	0	NA	TTS (NM_032595)	TTS (NM_032595)	-3490	NM_174920	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
83569	chr16	28128171	28128530	+	0	NA	intron (NM_001270940, intron 13 of 24)	intron (NM_001270940, intron 13 of 24)	-64636	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
109811	chr19	1160951	1161730	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	12928	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
121392	chr19	46934471	46935600	+	0	NA	intron (NM_004491, intron 2 of 6)	intron (NM_004491, intron 2 of 6)	74038	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
152537	chr22	20989551	20990250	+	0	NA	intron (NM_006767, intron 7 of 20)	intron (NM_006767, intron 7 of 20)	7603	NM_006767	8216		NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|NS2|SWNTS2	leucine zipper like post translational regulator 1	protein-coding
11957	chr1	93908471	93910450	+	0	NA	promoter-TSS (NM_002061)	promoter-TSS (NM_002061)	-30	NM_002061	2730		NM_002061	ENSG00000023909	GCLM	GLCLR	glutamate-cysteine ligase modifier subunit	protein-coding
158115	chr22	50036351	50036650	+	0	NA	intron (NM_001350317, intron 9 of 13)	L1ME3|LINE|L1	21727	NM_001350317	164714		NM_001080447	ENSG00000138892	TTLL8	-	tubulin tyrosine ligase like 8	protein-coding
118195	chr19	35134421	35134730	+	0	NA	exon (NM_139284, exon 1 of 9)	exon (NM_139284, exon 1 of 9)	484	NM_139284	163175		NM_139284	ENSG00000153902	LGI4	AMC1|AMCNMY|LGIL3	leucine rich repeat LGI family member 4	protein-coding
79662	chr16	1204521	1205100	+	0	NA	intron (NM_021098, intron 10 of 34)	CpG	20458	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
184369	chr5	97182701	97184100	+	0	NA	promoter-TSS (NM_001159749)	promoter-TSS (NM_001159749)	-153	NM_001159749	55781		NM_018343	ENSG00000058729	RIOK2	RIO2	RIO kinase 2	protein-coding
211791	chr7	107678521	107678780	+	0	NA	intron (NM_000441, intron 6 of 20)	intron (NM_000441, intron 6 of 20)	-16852	NR_028137	286002		NR_028137		SLC26A4-AS1	-	SLC26A4 antisense RNA 1	ncRNA
187316	chr5	141617801	141619680	+	0	NA	intron (NM_005219, intron 1 of 27)	CpG	260	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
205015	chr7	6485801	6486180	+	0	NA	Intergenic	AluY|SINE|Alu	-1838	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
121143	chr19	46262621	46264080	+	0	NA	Intergenic	Intergenic	33608	NM_198541	374918		NM_198541	ENSG00000188293	IGFL1	APRG644|UNQ644	IGF like family member 1	protein-coding
204413	chr7	3093851	3094230	+	0	NA	Intergenic	AluJb|SINE|Alu	-50173	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
29758	chr10	72221321	72221800	+	0	NA	intron (NM_001242546, intron 2 of 4)	AluSx1|SINE|Alu	-4426	NM_001369099	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
10534	chr1	66961271	66961430	+	0	NA	intron (NM_001077702, intron 8 of 15)	MIR3|SINE|MIR	31094	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
191320	chr6	6915701	6915900	+	0	NA	Intergenic	MIRc|SINE|MIR	-191943	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
94703	chr17	30694871	30695330	+	0	NA	Intergenic	AluSz|SINE|Alu	-14508	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
26776	chr10	22954051	22954150	+	0	NA	intron (NM_173081, intron 3 of 18)	L1ME1|LINE|L1	26047	NM_001282746	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
1248	chr1	2293101	2293700	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	59261	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
182737	chr5	68269801	68270200	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-18519	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
95180	chr17	35177121	35178180	+	0	NA	intron (NM_173167, intron 16 of 18)	intron (NM_173167, intron 16 of 18)	16743	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
129178	chr2	68169171	68169730	+	0	NA	intron (NM_001329916, intron 5 of 5)	Tigger2|DNA|TcMar-Tigger	11562	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
177171	chr4	108152171	108152530	+	0	NA	intron (NM_016269, intron 3 of 11)	L2c|LINE|L2	14447	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
220540	chr8	100698101	100698300	+	0	NA	Intergenic	Intergenic	4824	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
136786	chr2	181468151	181469000	+	0	NA	intron (NM_000885, intron 2 of 27)	intron (NM_000885, intron 2 of 27)	11189	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
81659	chr16	10971501	10972200	+	0	NA	intron (NM_001243403, intron 5 of 20)	intron (NM_001243403, intron 5 of 20)	27286	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
85651	chr16	56190671	56192100	+	0	NA	promoter-TSS (NM_138736)	promoter-TSS (NM_138736)	-104	NM_020988	2775		NM_020988	ENSG00000087258	GNAO1	DEE17|EIEE17|G-ALPHA-o|GNAO|HG1G|HLA-DQB1|NEDIM	G protein subunit alpha o1	protein-coding
183553	chr5	80125921	80126580	+	0	NA	intron (NR_126061, intron 11 of 13)	intron (NR_126061, intron 11 of 13)	-42585	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
88520	chr16	85334771	85335530	+	0	NA	Intergenic	MER34C2|LTR|ERV1	-28825	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
19411	chr1	174172151	174172630	+	0	NA	intron (NM_001366447, intron 1 of 20)	L1MA9|LINE|L1	12870	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
134484	chr2	143261901	143262760	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	132911	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
45134	chr11	117191771	117191930	+	0	NA	intron (NM_001040455, intron 18 of 25)	intron (NM_001040455, intron 18 of 25)	-7444	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
171627	chr3	197509871	197510780	+	0	NA	promoter-TSS (NR_145451)	promoter-TSS (NR_145451)	-664	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
225420	chr9	35063871	35064230	+	0	NA	intron (NM_001354927, intron 6 of 16)	intron (NM_001354927, intron 6 of 16)	8258	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
145595	chr20	44571421	44571680	+	0	NA	intron (NM_007066, intron 1 of 3)	intron (NM_007066, intron 1 of 3)	-11029	NM_001281445	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
180867	chr5	32709701	32710530	+	0	NA	promoter-TSS (NM_001204376)	promoter-TSS (NM_001204376)	-522	NM_001204376	4883		NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|BOMOS|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor 3	protein-coding
197824	chr6	87741771	87742600	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-39952	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
51476	chr12	52067321	52067800	+	0	NA	Intergenic	MIRc|SINE|MIR	-2414	NM_021934	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
211460	chr7	105092101	105092580	+	0	NA	intron (NM_182931, intron 15 of 26)	AluSx|SINE|Alu	78135	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
54441	chr12	91786051	91786350	+	0	NA	Intergenic	Intergenic	355513	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
7326	chr1	32677701	32677900	+	0	NA	intron (NM_005610, intron 11 of 11)	intron (NM_005610, intron 11 of 11)	24970	NM_030786	81493		NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
78048	chr15	90078801	90079400	+	0	NA	intron (NR_146321, intron 1 of 1)	intron (NR_146321, intron 1 of 1)	3107	NR_146321	109729181		NR_146321	ENSG00000259291	ZNF710-AS1	-	ZNF710 antisense RNA 1	ncRNA
124874	chr2	8308971	8309780	+	0	NA	intron (NR_034135, intron 2 of 8)	intron (NR_034135, intron 2 of 8)	19044	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
228292	chr9	98097721	98098380	+	0	NA	intron (NM_014788, intron 3 of 5)	intron (NM_014788, intron 3 of 5)	21172	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
202291	chr6	157186871	157187350	+	0	NA	intron (NM_001371656, intron 14 of 20)	intron (NM_001371656, intron 14 of 20)	136409	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
42753	chr11	72721401	72723000	+	0	NA	non-coding (NR_161388, exon 1 of 30)	non-coding (NR_161388, exon 1 of 30)	140	NR_161388	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
96772	chr17	41737401	41738900	+	0	NA	Intergenic	Intergenic	-3504	NM_001079871	9001		NM_003949	ENSG00000173805	HAP1	HAP2|HIP5|HLP|hHLP1	huntingtin associated protein 1	protein-coding
161942	chr3	46129601	46130050	+	0	NA	Intergenic	Intergenic	-43981	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
233170	chr9	137184071	137184580	+	0	NA	intron (NM_013366, intron 4 of 12)	intron (NM_013366, intron 4 of 12)	4235	NM_013366	29882		NM_013366	ENSG00000176248	ANAPC2	APC2	anaphase promoting complex subunit 2	protein-coding
178729	chr4	152936751	152936950	+	0	NA	promoter-TSS (NR_136614)	promoter-TSS (NR_136614)	-13	NR_136614	729870		NR_136614	ENSG00000287642	LOC729870	-	uncharacterized LOC729870	ncRNA
31088	chr10	89248001	89248280	+	0	NA	intron (NM_000235, intron 1 of 9)	AluSx4|SINE|Alu	3635	NM_000235	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
206616	chr7	35841901	35842100	+	0	NA	intron (NM_001788, intron 2 of 12)	intron (NM_001788, intron 2 of 12)	40781	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
168243	chr3	141378951	141379680	+	0	NA	intron (NM_001376119, intron 2 of 3)	intron (NM_001376119, intron 2 of 3)	-5490	NM_001376143	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
28340	chr10	46633951	46634530	+	0	NA	intron (NR_027632, intron 2 of 6)	AluJo|SINE|Alu	17736	NR_027632	414241		NM_001098846	ENSG00000165874	SHLD2P1	FAM35B|FAM35BP|FAM35EP|bA38L15.1	shieldin complex subunit 2 pseudogene 1	pseudo
69516	chr14	96125971	96127000	+	0	NA	Intergenic	Intergenic	-78354	NM_000623	624		NM_000623	ENSG00000168398	BDKRB2	B2R|BK-2|BK2|BKR2|BRB2	bradykinin receptor B2	protein-coding
30786	chr10	84358221	84358480	+	0	NA	intron (NM_001284241, intron 1 of 2)	MamRep137|DNA|TcMar-Tigger	29761	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
155772	chr22	39237501	39238130	+	0	NA	intron (NM_002608, intron 1 of 6)	MIR3|SINE|MIR	3094	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
235306	chrX	42704601	42704800	+	0	NA	Intergenic	MER121|DNA|hAT?	73463	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
133676	chr2	127076371	127077500	+	0	NA	intron (NM_139345, intron 1 of 15)	intron (NM_139345, intron 1 of 15)	5130	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
106110	chr18	9172501	9173080	+	0	NA	intron (NM_001204056, intron 1 of 11)	L1PA11|LINE|L1	35227	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
52674	chr12	56357271	56357950	+	0	NA	intron (NM_001385115, intron 1 of 23)	AluY|SINE|Alu	2497	NM_001385113	6773		NM_005419	ENSG00000170581	STAT2	IMD44|ISGF-3|P113|PTORCH3|STAT113	signal transducer and activator of transcription 2	protein-coding
199914	chr6	127875471	127875700	+	0	NA	intron (NM_001164687, intron 1 of 5).2	MER3|DNA|hAT-Charlie	-20397	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
221993	chr8	130006871	130007580	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	1228	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
72185	chr15	29821551	29821930	+	0	NA	promoter-TSS (NM_001301026).2	promoter-TSS (NM_001301026).2	-261	NM_001301026	7082		NM_003257	ENSG00000104067	TJP1	ZO-1	tight junction protein 1	protein-coding
52715	chr12	56595071	56595450	+	0	NA	TTS (NM_013449)	TTS (NM_013449)	35066	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
168327	chr3	141739031	141739850	+	0	NA	intron (NM_001201370, intron 1 of 1)	intron (NM_001201370, intron 1 of 1)	1142	NM_014245	9616		NM_014245	ENSG00000114125	RNF7	CKBBP1|ROC2|SAG|rbx2	ring finger protein 7	protein-coding
96252	chr17	39843171	39844200	+	0	NA	intron (NM_183231, intron 1 of 5)	intron (NM_183231, intron 1 of 5)	20503	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
130593	chr2	85866771	85867130	+	0	NA	intron (NM_001363847, intron 1 of 5)	intron (NM_001363847, intron 1 of 5)	720	NM_001042437	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
216681	chr8	22156501	22157400	+	0	NA	promoter-TSS (NM_139278)	promoter-TSS (NM_139278)	-144	NM_139278	203190		NM_139278	ENSG00000168481	LGI3	IDDMDS|LGIL4	leucine rich repeat LGI family member 3	protein-coding
159401	chr3	13453901	13454300	+	0	NA	Intergenic	AluSg4|SINE|Alu	25953	NR_046690	100874101		NR_046690	ENSG00000244502	HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
36351	chr11	3915951	3916550	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	60188	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
53001	chr12	57512451	57512950	+	0	NA	promoter-TSS (NR_106816)	promoter-TSS (NR_106816)	12	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
64293	chr14	23549471	23549830	+	0	NA	intron (NM_033400, intron 1 of 9)	intron (NM_033400, intron 1 of 9)	2115	NM_033400	85446		NM_033400	ENSG00000136367	ZFHX2	MARSIS|ZFH-5|ZFH5|ZNF409	zinc finger homeobox 2	protein-coding
42273	chr11	68257371	68258050	+	0	NA	Intergenic	Intergenic	14263	NM_001300913	53838		NM_022338	ENSG00000171067	C11orf24	DM4E3	chromosome 11 open reading frame 24	protein-coding
129062	chr2	65073071	65073430	+	0	NA	intron (NM_015147, intron 3 of 6)	MIR|SINE|MIR	16834	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
74097	chr15	52790021	52791630	+	0	NA	promoter-TSS (NM_004498)	promoter-TSS (NM_004498)	-489	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
223973	chr9	2019091	2020000	+	0	NA	intron (NM_003070, intron 1 of 33)	intron (NM_003070, intron 1 of 33)	-2400	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
45515	chr11	118698071	118698630	+	0	NA	Intergenic	Intergenic	-18700	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
30053	chr10	73819501	73819700	+	0	NA	exon (NM_001367535, exon 17 of 19)	exon (NM_001367535, exon 17 of 19)	-7780	NR_160744	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
231190	chr9	129919901	129920100	+	0	NA	intron (NM_001363755, intron 10 of 15)	intron (NM_001363755, intron 10 of 15)	50395	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
126528	chr2	28543471	28543630	+	0	NA	intron (NM_153021, intron 14 of 57)	intron (NM_153021, intron 14 of 57)	-22807	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
140084	chr2	231448571	231449200	+	0	NA	Intergenic	AluJb|SINE|Alu	7051	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
14799	chr1	146248771	146249200	+	0	NA	Intergenic	Charlie10|DNA|hAT-Charlie	-19953	NM_001364006	388677		NM_203458	ENSG00000264343	NOTCH2NLA	N2N|NOTCH2NL	notch 2 N-terminal like A	protein-coding
3117	chr1	12341521	12341900	+	0	NA	intron (NM_015378, intron 40 of 69)	intron (NM_015378, intron 40 of 69)	111680	NM_018156	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
147898	chr20	62887421	62888400	+	0	NA	3' UTR (NM_080797, exon 15 of 15)	3' UTR (NM_080797, exon 15 of 15)	-5007	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
131696	chr2	97738021	97738600	+	0	NA	intron (NM_207519, intron 5 of 5)	intron (NM_207519, intron 5 of 5)	5010	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
46480	chr11	128316521	128317100	+	0	NA	Intergenic	Intergenic	108044	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
224826	chr9	26946551	26948230	+	0	NA	promoter-TSS (NM_001099222)	promoter-TSS (NM_001099222)	83	NM_001321546	9373		NM_004253	ENSG00000137055	PLAA	DOA1|NDMSBA|PLA2P|PLAP	phospholipase A2 activating protein	protein-coding
42086	chr11	67503201	67503530	+	0	NA	intron (NM_001130848, intron 2 of 23)	L2a|LINE|L2	1998	NM_004910	9600		NM_004910	ENSG00000110697	PITPNM1	DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9	phosphatidylinositol transfer protein membrane associated 1	protein-coding
236067	chrX	56568971	56569130	+	0	NA	Intergenic	Intergenic	5423	NM_013444	29978		NM_013444	ENSG00000188021	UBQLN2	ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2	ubiquilin 2	protein-coding
226984	chr9	83219751	83219850	+	0	NA	Intergenic	Intergenic	47468	NM_001375487	257019		NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
106069	chr18	9111301	9111700	+	0	NA	intron (NM_021074, intron 1 of 7)	AluSx|SINE|Alu	8801	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
125353	chr2	11001501	11001830	+	0	NA	Intergenic	L1HS|LINE|L1	89731	NM_002236	3754		NM_002236	ENSG00000162975	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel modifier subfamily F member 1	protein-coding
10115	chr1	59072171	59072630	+	0	NA	intron (NR_110626, intron 2 of 2)	intron (NR_110626, intron 2 of 2)	51924	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
168821	chr3	152236851	152237600	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-6407	NM_001376839	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
83820	chr16	28840701	28841450	+	0	NA	Intergenic	AluSx1|SINE|Alu	2932	NR_039872	100616256		NR_039872	ENSG00000283845	MIR4721	-	microRNA 4721	ncRNA
115033	chr19	14096651	14096950	+	0	NA	intron (NM_207518, intron 8 of 9)	MIRb|SINE|MIR	-6049	NM_138352	90378		NM_138352	ENSG00000141858	SAMD1	-	sterile alpha motif domain containing 1	protein-coding
233624	chrX	479321	479630	+	0	NA	Intergenic	AluSg|SINE|Alu	-92568	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
96434	chr17	40188471	40188630	+	0	NA	intron (NM_001303534, intron 4 of 14)	L2b|LINE|L2	-5047	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
114435	chr19	12693001	12693200	+	0	NA	intron (NM_032301, intron 3 of 9)	MIR|SINE|MIR	3531	NM_032301	84261		NM_032301	ENSG00000132004	FBXW9	Fbw9|MEC-15	F-box and WD repeat domain containing 9	protein-coding
149400	chr21	31163851	31164550	+	0	NA	intron (NM_001353694, intron 16 of 27)	AluY|SINE|Alu	-3260	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
139289	chr2	219511651	219512280	+	0	NA	Intergenic	Intergenic	-2517	NM_182847	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
47070	chr12	565671	566680	+	0	NA	exon (NM_001294345, exon 2 of 4)	exon (NM_001294345, exon 2 of 4)	20311	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
55553	chr12	105934401	105934600	+	0	NA	Intergenic	Intergenic	205533	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
209287	chr7	75983721	75984480	+	0	NA	intron (NM_001382662, intron 10 of 14)	intron (NM_001382662, intron 10 of 14)	10495	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
7041	chr1	31939421	31941130	+	0	NA	Intergenic	L2c|LINE|L2	-1907	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
136264	chr2	174675421	174676450	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	6964	NM_001077269	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
27453	chr10	31941171	31941330	+	0	NA	Intergenic	Intergenic	-12374	NM_001270695	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
176936	chr4	102866521	102866980	+	0	NA	intron (NM_181890, intron 1 of 7)	intron (NM_181890, intron 1 of 7)	2143	NM_181893	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
26256	chr10	14658151	14658530	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-53939	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
70997	chr14	104726671	104726830	+	0	NA	intron (NM_152328, intron 1 of 12)	intron (NM_152328, intron 1 of 12)	2521	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
19150	chr1	171563001	171563400	+	0	NA	intron (NM_015172, intron 20 of 33)	MER2|DNA|TcMar-Tigger	-56563	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
208796	chr7	73597151	73597450	+	0	NA	exon (NM_032954, exon 9 of 17)	exon (NM_032954, exon 9 of 17)	-18721	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
187537	chr5	142717671	142718200	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-19865	NM_001257205	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
8733	chr1	42687571	42688130	+	0	NA	intron (NM_004559, intron 2 of 7)	intron (NM_004559, intron 2 of 7)	4714	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
34953	chr11	484621	484880	+	0	NA	intron (NR_138046, intron 4 of 12)	CpG	22018	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
29278	chr10	69203701	69204600	+	0	NA	intron (NM_001301683, intron 14 of 15)	L1ME4c|LINE|L1	-16182	NM_025130	80201		NM_025130	ENSG00000156510	HKDC1	RP92	hexokinase domain containing 1	protein-coding
3022	chr1	12102301	12103250	+	0	NA	intron (NM_001281430, intron 2 of 13)	AluSx|SINE|Alu	39398	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
109084	chr18	79953601	79953800	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2047	NM_025078	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
229969	chr9	126722001	126723000	+	0	NA	Intergenic	Intergenic	-82506	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
119507	chr19	40519551	40519950	+	0	NA	exon (NM_020971, exon 16 of 36)	exon (NM_020971, exon 16 of 36)	-10741	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
131940	chr2	99156871	99157450	+	0	NA	intron (NM_145197, intron 3 of 3)	MIR|SINE|MIR	2086	NR_037935	51601		NM_015929	ENSG00000144182	LIPT1	LIPT1D	lipoyltransferase 1	protein-coding
180361	chr5	6820951	6821150	+	0	NA	intron (NR_146281, intron 1 of 1)	Tigger16a|DNA|TcMar-Tigger	6871	NR_036242	100422999		NR_036242	ENSG00000283420	MIR4278	-	microRNA 4278	ncRNA
233723	chrX	1352971	1353130	+	0	NA	intron (NM_001267713, intron 4 of 9).2	intron (NM_001267713, intron 4 of 9).2	16265	NM_002183	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
24714	chr1	247363001	247363300	+	0	NA	intron (NR_168399, intron 1 of 2)	intron (NR_168399, intron 1 of 2)	31096	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
18102	chr1	160697051	160697550	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK-int|LTR|ERVK	14522	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
213771	chr7	140672521	140674080	+	0	NA	5' UTR (NM_052853, exon 1 of 8)	5' UTR (NM_052853, exon 1 of 8)	355	NM_052853	90956		NM_052853	ENSG00000133597	ADCK2	AARF	aarF domain containing kinase 2	protein-coding
206962	chr7	38295071	38295230	+	0	NA	Intergenic	Intergenic	-21503	NM_001003806	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
112368	chr19	5981971	5982330	+	0	NA	intron (NR_046376, intron 1 of 3)	AluJo|SINE|Alu	3747	NR_046376	100128568		NR_046376	ENSG00000266983	RANBP3-DT	-	RANBP3 divergent transcript	ncRNA
59637	chr13	28137771	28138600	+	0	NA	promoter-TSS (NM_175854)	promoter-TSS (NM_175854)	-360	NM_175854	255967		NM_175854	ENSG00000152520	PAN3	-	poly(A) specific ribonuclease subunit PAN3	protein-coding
150204	chr21	39378901	39379300	+	0	NA	Intergenic	AluJb|SINE|Alu	-1144	NR_146614	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
24675	chr1	247125951	247126780	+	0	NA	intron (NM_001243740, intron 3 of 3)	CpG	-13948	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
239013	chrY	2887451	2888130	+	0	NA	Intergenic	MER83A-int|LTR|ERV1	46188	NM_001008	6192		NM_001008	ENSG00000129824	RPS4Y1	RPS4Y|S4	ribosomal protein S4 Y-linked 1	protein-coding
100400	chr17	60356371	60356530	+	0	NA	intron (NM_032582, intron 1 of 33)	L1M4|LINE|L1	35683	NM_032582	84669		NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding
225602	chr9	36153251	36153350	+	0	NA	intron (NM_022343, intron 4 of 4)	intron (NM_022343, intron 4 of 4)	-16088	NM_005893	881		NM_005893	ENSG00000185972	CCIN	BTBD20|KBTBD14	calicin	protein-coding
138572	chr2	207720701	207721100	+	0	NA	intron (NM_001330218, intron 1 of 9)	intron (NM_001330218, intron 1 of 9)	9260	NM_001330218	151195		NM_152523	ENSG00000163249	CCNYL1	-	cyclin Y like 1	protein-coding
123372	chr19	53898421	53899300	+	0	NA	intron (NM_001316329, intron 11 of 18)	CpG	-10418	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
208768	chr7	73552821	73553480	+	0	NA	intron (NM_001707, intron 1 of 5)	AluJr|SINE|Alu	4086	NR_036682	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
95833	chr17	38807471	38808050	+	0	NA	intron (NM_017748, intron 6 of 9)	AluJr|SINE|Alu	-7855	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
49768	chr12	31804021	31804300	+	0	NA	Intergenic	LTR68|LTR|ERV1	-11862	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
57898	chr12	123451551	123452680	+	0	NA	Intergenic	AluJr4|SINE|Alu	-6024	NR_104103	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
133649	chr2	127048751	127049050	+	0	NA	intron (NM_139345, intron 15 of 15)	intron (NM_139345, intron 15 of 15)	33165	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
203647	chr7	980851	981280	+	0	NA	intron (NR_156697, intron 4 of 4)	AluSz|SINE|Alu	-2116	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
119886	chr19	41542951	41543050	+	0	NA	Intergenic	Intergenic	-6518	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
92499	chr17	8882471	8882630	+	0	NA	intron (NM_001142633, intron 15 of 18)	L2b|LINE|L2	-14873	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
157737	chr22	46603871	46604880	+	0	NA	intron (NM_001366660, intron 1 of 17)	intron (NM_001366660, intron 1 of 17)	-16011	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
239319	chrY	17579901	17580330	+	0	NA	promoter-TSS (NR_002161)	promoter-TSS (NR_002161)	-642	NR_002161	401630		NR_002161		FAM224A	LINC00230A|NCRNA00230A	family with sequence similarity 224 member A	ncRNA
109317	chr19	583151	583700	+	0	NA	TTS (NM_198589)	TTS (NM_198589)	-6456	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
225952	chr9	41088171	41089000	+	0	NA	Intergenic	Intergenic	-13960	NR_002836	595135		NR_002836	ENSG00000290923	PGM5P2	-	phosphoglucomutase 5 pseudogene 2	pseudo
57191	chr12	121452671	121452830	+	0	NA	intron (NM_001005366, intron 13 of 22)	intron (NM_001005366, intron 13 of 22)	-8398	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
193597	chr6	30720901	30722100	+	0	NA	promoter-TSS (NM_001293216).8	promoter-TSS (NM_001293216).8	-138	NM_001293212	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
94226	chr17	28650671	28651200	+	0	NA	intron (NM_006923, intron 2 of 2)	AluJr4|SINE|Alu	-5776	NM_001363827	9703		NM_014680	ENSG00000007202	BLTP2	BCOX|BCOX1|CT101|FMP27|Hob|KIAA0100	bridge-like lipid transfer protein family member 2	protein-coding
60737	chr13	44411771	44411950	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-5876	NR_104174	400128		NR_104174	ENSG00000237361	TUSC8	LINC01071|XLOC_010588	tumor suppressor candidate 8	ncRNA
74129	chr15	55224601	55225400	+	0	NA	intron (NM_183236, intron 5 of 6)	intron (NM_183236, intron 5 of 6)	-28059	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
49539	chr12	26271971	26272130	+	0	NA	Intergenic	Intergenic	76477	NM_005086	8082		NM_005086	ENSG00000123096	SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
112396	chr19	6108471	6109570	+	0	NA	intron (NM_000635, intron 1 of 17)	CpG	1480	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
152316	chr22	20358771	20359130	+	0	NA	Intergenic	CpG	20037	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
90848	chr17	2355401	2356000	+	0	NA	intron (NM_001346700, intron 2 of 22)	intron (NM_001346700, intron 2 of 22)	18199	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
193411	chr6	30445151	30445630	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-44119	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
170040	chr3	182683571	182683950	+	0	NA	Intergenic	Intergenic	-109744	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
235581	chrX	47560401	47561780	+	0	NA	promoter-TSS (NM_001654)	promoter-TSS (NM_001654)	-10	NM_001256196	369		NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
58573	chr12	132436871	132438680	+	0	NA	Intergenic	Intergenic	-52376	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
181206	chr5	39160501	39161200	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	58713	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
138465	chr2	206536901	206537300	+	0	NA	intron (NM_003812, intron 4 of 25)	L2a|LINE|L2	93568	NM_003812	8745		NM_003812	ENSG00000114948	ADAM23	MDC-3|MDC3	ADAM metallopeptidase domain 23	protein-coding
131668	chr2	97666901	97667530	+	0	NA	Intergenic	Intergenic	-2528	NR_038386	728537		NM_001351368	ENSG00000228486	C2orf92	LINC01125	chromosome 2 open reading frame 92	protein-coding
147866	chr20	62820871	62821130	+	0	NA	intron (NM_001853, intron 5 of 31)	intron (NM_001853, intron 5 of 31)	3950	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
71461	chr14	105863271	105863430	+	0	NA	Intergenic	Intergenic	-3797	NR_130466	100616422		NR_130466	ENSG00000264781	MIR4537	-	microRNA 4537	ncRNA
22763	chr1	224392401	224393200	+	0	NA	intron (NM_001115113, intron 13 of 13)	intron (NM_001115113, intron 13 of 13)	5511	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
75469	chr15	65887371	65888130	+	0	NA	exon (NM_001206836, exon 5 of 5)	exon (NM_001206836, exon 5 of 5)	18259	NM_001206836	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
172873	chr4	3346101	3346550	+	0	NA	intron (NM_198229, intron 3 of 17)	MER65-int|LTR|ERV1	-23873	NM_198227	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
144819	chr20	36775351	36775950	+	0	NA	Intergenic	AluSz|SINE|Alu	-1887	NM_001145318	79980		NM_024918	ENSG00000149636	DSN1	C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3	DSN1 component of MIS12 kinetochore complex	protein-coding
88869	chr16	87693921	87694800	+	0	NA	intron (NM_020655, intron 4 of 4)	intron (NM_020655, intron 4 of 4)	71626	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
24222	chr1	236140771	236140930	+	0	NA	Intergenic	Intergenic	-1689	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
140317	chr2	232506001	232506400	+	0	NA	Intergenic	Intergenic	-14188	NM_001195129	646960		NM_001195129	ENSG00000237412	PRSS56	MCOP6	serine protease 56	protein-coding
77912	chr15	89241321	89241830	+	0	NA	Intergenic	L1MB2|LINE|L1	-2404	NM_001113378	55215		NM_018193	ENSG00000140525	FANCI	KIAA1794	FA complementation group I	protein-coding
115339	chr19	15173721	15173980	+	0	NA	intron (NM_000435, intron 25 of 32)	intron (NM_000435, intron 25 of 32)	5500	NR_106853	102465476		NR_106853	ENSG00000275711	MIR6795	hsa-mir-6795	microRNA 6795	ncRNA
204295	chr7	2668701	2669500	+	0	NA	Intergenic	AluJo|SINE|Alu	-10422	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
90141	chr17	125401	125600	+	0	NA	Intergenic	L1MC3|LINE|L1	-12069	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
125059	chr2	9620901	9621830	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	9632	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
11612	chr1	91706421	91706680	+	0	NA	intron (NR_036634, intron 15 of 17)	MER41B|LTR|ERV1	179601	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
36896	chr11	10780221	10780680	+	0	NA	TTS (NM_014633)	TTS (NM_014633)	21158	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
106363	chr18	13262851	13262950	+	0	NA	intron (NM_001378100, intron 1 of 6)	CpG	-14462	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
71800	chr15	21735151	21736200	+	0	NA	non-coding (NR_135666, exon 2 of 2)	non-coding (NR_135666, exon 2 of 2)	324	NR_135666	646370		NR_135666		IGHV1OR15-3	IGHV1OR153	immunoglobulin heavy variable 1/OR15-3 (pseudogene)	pseudo
138776	chr2	216016801	216017030	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	-3364	NM_018000	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
139853	chr2	230498771	230499130	+	0	NA	intron (NM_001080391, intron 19 of 28)	MIR3|SINE|MIR	82194	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
92563	chr17	8997821	8998450	+	0	NA	Intergenic	Intergenic	-23375	NM_004822	9423		NM_004822	ENSG00000065320	NTN1	MRMV4|NET1|NTN1L	netrin 1	protein-coding
173629	chr4	13452921	13453280	+	0	NA	intron (NM_001017979, intron 4 of 6)	L1M2c|LINE|L1	31240	NM_001017979	9364		NM_004249	ENSG00000157869	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
86088	chr16	57635521	57635780	+	0	NA	intron (NM_001145772, intron 1 of 14)	MIRc|SINE|MIR	-3842	NM_001145774	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
85157	chr16	46607521	46607800	+	0	NA	intron (NM_024745, intron 5 of 12)	intron (NM_024745, intron 5 of 12)	13719	NM_024745	79801		NM_024745	ENSG00000171241	SHCBP1	PAL	SHC binding and spindle associated 1	protein-coding
188554	chr5	156934071	156934230	+	0	NA	intron (NM_001146726, intron 4 of 7)	intron (NM_001146726, intron 4 of 7)	29076	NM_001146726	91937		NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T cell immunoglobulin and mucin domain containing 4	protein-coding
155549	chr22	38717901	38718100	+	0	NA	intron (NM_004286, intron 4 of 11)	UCON105|Unknown|Unknown	12056	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
87478	chr16	71744521	71744600	+	0	NA	intron (NM_001128, intron 19 of 22)	intron (NM_001128, intron 19 of 22)	13927	NR_003059	692111		NR_003059	ENSG00000223224	SNORD71	HBII-239|MIRN768|hsa-mir-768	small nucleolar RNA, C/D box 71	snoRNA
28019	chr10	43204871	43205930	+	0	NA	intron (NM_001282862, intron 2 of 12)	intron (NM_001282862, intron 2 of 12)	24339	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
150429	chr21	42414771	42416000	+	0	NA	intron (NM_018961, intron 5 of 14)	intron (NM_018961, intron 5 of 14)	11483	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
178538	chr4	151029751	151030250	+	0	NA	Intergenic	Intergenic	-14273	NM_001367550	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
89253	chr16	88653451	88653550	+	0	NA	intron (NM_002461, intron 8 of 9)	L1MB5|LINE|L1	-2447	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
220718	chr8	101974771	101975330	+	0	NA	intron (NM_001040625, intron 3 of 6)	intron (NM_001040625, intron 3 of 6)	-9382	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
197108	chr6	57147971	57148330	+	0	NA	exon (NM_001031623, exon 10 of 15)	exon (NM_001031623, exon 10 of 15)	24063	NR_110742	101927211		NR_110742		ZNF451-AS1	-	ZNF451 regulatory antisense RNA 1	ncRNA
50957	chr12	49541771	49542730	+	0	NA	intron (NM_001314030, intron 3 of 14)	intron (NM_001314030, intron 3 of 14)	3220	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
18094	chr1	160690671	160691030	+	0	NA	intron (NM_001256030, intron 1 of 2)	LTR5|LTR|ERVK	20972	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
180848	chr5	32588121	32588580	+	0	NA	intron (NM_006713, intron 1 of 4)	intron (NM_006713, intron 1 of 4)	2793	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
75593	chr15	67093701	67093900	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	28198	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
200573	chr6	136287791	136288200	+	0	NA	intron (NM_001301038, intron 1 of 12)	AluSx1|SINE|Alu	1851	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
21163	chr1	203755701	203756300	+	0	NA	Intergenic	MER41B|LTR|ERV1	-9183	NM_001136190	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
36659	chr11	8025871	8026030	+	0	NA	Intergenic	L1ME1|LINE|L1	-9441	NR_125366	103581031		NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility 23	ncRNA
145826	chr20	45790301	45790980	+	0	NA	intron (NM_080614, intron 1 of 6)	AluSx|SINE|Alu	1243	NM_080614	140686		NM_080614	ENSG00000124116	WFDC3	WAP14|dJ447F3.3	WAP four-disulfide core domain 3	protein-coding
50435	chr12	47637121	47637450	+	0	NA	Intergenic	L1PB1|LINE|L1	68745	NM_024604	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
201676	chr6	149514171	149514530	+	0	NA	intron (NM_139126, intron 11 of 12)	AluSz|SINE|Alu	-29336	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
163244	chr3	50276151	50276880	+	0	NA	exon (NM_001290060, exon 17 of 17)	exon (NM_001290060, exon 17 of 17)	-2572	NM_153215	132228		NM_153215	ENSG00000179564	LSMEM2	C3orf45	leucine rich single-pass membrane protein 2	protein-coding
130020	chr2	74204521	74204880	+	0	NA	intron (NR_027405, intron 2 of 8)	MLT1M|LTR|ERVL-MaLR	6085	NM_006636	10797		NM_006636	ENSG00000065911	MTHFD2	NMDMC	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	protein-coding
32393	chr10	102425151	102425900	+	0	NA	intron (NM_024040, intron 1 of 8)	intron (NM_024040, intron 1 of 8)	-5591	NM_001270965	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
107558	chr18	48805851	48805950	+	0	NA	intron (NM_014772, intron 9 of 11)	L2a|LINE|L2	135300	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
101170	chr17	65135571	65135800	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	-1685	NM_001081955	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
112841	chr19	7534701	7536980	+	0	NA	exon (NM_001166114, exon 1 of 32)	exon (NM_001166114, exon 1 of 32)	123	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
60620	chr13	42274371	42275880	+	0	NA	intron (NM_016248, intron 1 of 12)	intron (NM_016248, intron 1 of 12)	2973	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
179087	chr4	168421671	168421830	+	0	NA	intron (NM_001291510, intron 17 of 29)	intron (NM_001291510, intron 17 of 29)	58742	NM_001345927	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
128926	chr2	64489201	64489680	+	0	NA	intron (NR_147011, intron 2 of 2)	intron (NR_147011, intron 2 of 2)	3087	NR_147011	105374774		NR_147011	ENSG00000223863	LINC01805	-	long intergenic non-protein coding RNA 1805	ncRNA
129236	chr2	68295471	68295700	+	0	NA	intron (NM_001371605, intron 3 of 3)	L1ME2|LINE|L1	24364	NM_001371604	25927		NM_015463	ENSG00000119865	CNRIP1	C2orf32|CRIP-1|CRIP1	cannabinoid receptor interacting protein 1	protein-coding
5946	chr1	26888051	26888150	+	0	NA	intron (NM_018066, intron 2 of 4)	AluSp|SINE|Alu	2183	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
73914	chr15	50768201	50768550	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2669	NM_032802	84888		NM_032802	ENSG00000138600	SPPL2A	IMD86|IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
91854	chr17	7222621	7223300	+	0	NA	TTS (NR_029896)	TTS (NR_029896)	419	NR_029896	442898		NR_029896	ENSG00000199053	MIR324	MIRN324|hsa-mir-324|mir-324	microRNA 324	ncRNA
8902	chr1	43946051	43947780	+	0	NA	promoter-TSS (NM_014652)	promoter-TSS (NM_014652)	-35	NM_014652	9670		NM_014652	ENSG00000117408	IPO13	IMP13|KAP13|LGL2|RANBP13	importin 13	protein-coding
143186	chr20	24673151	24673250	+	0	NA	Intergenic	Intergenic	203239	NR_147606	79953		NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
54057	chr12	75984351	75985250	+	0	NA	Intergenic	Intergenic	46976	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
35245	chr11	847901	848890	+	0	NA	intron (NM_001025239, intron 2 of 7)	intron (NM_001025239, intron 2 of 7)	3949	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
196491	chr6	43632171	43632630	+	0	NA	intron (NM_001003690, intron 1 of 3)	AluJo|SINE|Alu	2858	NM_001003690	9587		NM_014628	ENSG00000124688	MAD2L1BP	CMT2|p31comet	MAD2L1 binding protein	protein-coding
158903	chr3	9945801	9947830	+	0	NA	promoter-TSS (NR_046734)	promoter-TSS (NR_046734)	-589	NR_046734	100874032		NR_046734	ENSG00000230082	PRRT3-AS1	-	PRRT3 antisense RNA 1	ncRNA
166669	chr3	120090651	120091280	+	0	NA	intron (NM_001146156, intron 1 of 10)	intron (NM_001146156, intron 1 of 10)	3482	NM_001354596	2932		NM_002093	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding
225819	chr9	37755171	37755530	+	0	NA	intron (NM_001286954, intron 1 of 7)	L1MB3|LINE|L1	1545	NM_144964	158234		NM_144964	ENSG00000165275	TRMT10B	RG9MTD3|bA3J10.9	tRNA methyltransferase 10B	protein-coding
155988	chr22	39917901	39918380	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	-8464	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
3277	chr1	15248751	15249800	+	0	NA	intron (NM_052929, intron 1 of 30)	intron (NM_052929, intron 1 of 30)	2050	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
15588	chr1	150582271	150582830	+	0	NA	Intergenic	Intergenic	-2812	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
59720	chr13	29805971	29806130	+	0	NA	intron (NM_007106, intron 1 of 4)	AluSx3|SINE|Alu	44567	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
200240	chr6	131915121	131915580	+	0	NA	Intergenic	Intergenic	36022	NM_001901	1490		NM_001901	ENSG00000118523	CCN2	CTGF|HCS24|IBP-8|IGFBP8|NOV2	cellular communication network factor 2	protein-coding
179314	chr4	178953471	178953630	+	0	NA	Intergenic	(CACCAC)n|Simple_repeat|Simple_repeat	-1045614	NR_108092	101928656		NR_108092	ENSG00000251504	LINC01099	-	long intergenic non-protein coding RNA 1099	ncRNA
40881	chr11	65118871	65119400	+	0	NA	Intergenic	AluJo|SINE|Alu	-1434	NM_014205	741		NM_014205	ENSG00000174276	ZNHIT2	C11orf5|FON	zinc finger HIT-type containing 2	protein-coding
158653	chr3	5011651	5012900	+	0	NA	Intergenic	MIRb|SINE|MIR	-32314	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
134275	chr2	135750951	135751250	+	0	NA	intron (NM_014607, intron 2 of 12)	AluYc|SINE|Alu	-8456	NR_163478	107985946		NM_001365239		LOC107985946	-	uncharacterized LOC107985946	ncRNA
169783	chr3	172748371	172748730	+	0	NA	Intergenic	Intergenic	-2135	NM_001258316	1894		NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
166580	chr3	118851471	118852190	+	0	NA	Intergenic	Intergenic	-40997	NR_135547	105374060		NR_135547		LOC105374060	-	uncharacterized LOC105374060	ncRNA
83075	chr16	22370371	22370530	+	0	NA	intron (NM_001802, intron 1 of 4)	intron (NM_001802, intron 1 of 4)	4169	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
222417	chr8	134593751	134593850	+	0	NA	intron (NM_020863, intron 7 of 15)	intron (NM_020863, intron 7 of 15)	-4271	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
174095	chr4	33850651	33850750	+	0	NA	Intergenic	Intergenic	189193	NR_125902	101928622		NR_125902	ENSG00000250954	LOC101928622	-	uncharacterized LOC101928622	ncRNA
40188	chr11	62920221	62920480	+	0	NA	intron (NM_000738, intron 1 of 1)	intron (NM_000738, intron 1 of 1)	1013	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
53363	chr12	64661721	64661980	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSx|SINE|Alu	-39245	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
175493	chr4	73250471	73250930	+	0	NA	intron (NM_032217, intron 1 of 33)	(TTG)n|Simple_repeat|Simple_repeat	8098	NM_015574	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
15312	chr1	149860071	149862680	+	0	NA	promoter-TSS (NR_168447).2	promoter-TSS (NR_168447).2	-216	NM_003548	8370		NM_003548	ENSG00000270882	H4C14	FO108|H4|H4-16|H4/n|H4C1|H4C11|H4C12|H4C13|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2|H4FN|HIST2H4|HIST2H4A	H4 clustered histone 14	protein-coding
60571	chr13	41596651	41596950	+	0	NA	intron (NM_015058, intron 40 of 44)	(AC)n|Simple_repeat|Simple_repeat	-28405	NR_049803	100847026		NR_049803	ENSG00000284584	MIR5006	-	microRNA 5006	ncRNA
196760	chr6	45437851	45438150	+	0	NA	exon (NM_001015051, exon 5 of 8)	exon (NM_001015051, exon 5 of 8)	15725	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
47825	chr12	6593171	6593900	+	0	NA	exon (NM_001363606, exon 16 of 40)	exon (NM_001363606, exon 16 of 40)	-11926	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
151202	chr21	45130401	45130600	+	0	NA	intron (NR_073200, intron 2 of 12)	intron (NR_073200, intron 2 of 12)	-22030	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
199563	chr6	118891851	118891950	+	0	NA	TTS (NM_001378365)	TTS (NM_001378365)	-2252	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
94514	chr17	29433671	29433830	+	0	NA	intron (NM_025142, intron 1 of 17)	MER61A|LTR|ERV1	42825	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
51534	chr12	52315771	52315950	+	0	NA	intron (NM_002282, intron 7 of 8)	intron (NM_002282, intron 7 of 8)	5538	NM_002282	3889		NM_002282	ENSG00000170523	KRT83	EKVP5|HB3|Hb-3|KRTHB3|MNLIX	keratin 83	protein-coding
222591	chr8	140999871	141000380	+	0	NA	intron (NM_005607, intron 1 of 31)	(CA)n|Simple_repeat|Simple_repeat	879	NM_001352710	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
208592	chr7	72938871	72939030	+	0	NA	intron (NM_172020, intron 7 of 13)	intron (NM_172020, intron 7 of 13)	15813	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
182312	chr5	58886701	58887430	+	0	NA	Intergenic	Intergenic	112833	NM_001197223	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
144602	chr20	35805971	35806600	+	0	NA	intron (NM_016436, intron 2 of 17)	AluJb|SINE|Alu	34270	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
77151	chr15	79948271	79948880	+	0	NA	Intergenic	Intergenic	22621	NM_001114735	597		NM_004049	ENSG00000140379	BCL2A1	ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1	BCL2 related protein A1	protein-coding
40723	chr11	64807801	64808280	+	0	NA	exon (NM_130801, exon 3 of 10)	exon (NM_130801, exon 3 of 10)	2511	NM_001370262	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
141082	chr2	238288101	238291950	+	0	NA	Intergenic	Intergenic	-1415	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
167413	chr3	129004751	129005050	+	0	NA	promoter-TSS (NM_001348521)	promoter-TSS (NM_001348521)	-898	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
196517	chr6	43767171	43767530	+	0	NA	Intergenic	Intergenic	-2859	NM_001171628	7422		NM_003376	ENSG00000112715	VEGFA	L-VEGF|MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
23233	chr1	227764901	227765700	+	0	NA	intron (NR_136654, intron 2 of 3)	intron (NR_136654, intron 2 of 3)	-21512	NR_168381	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
193579	chr6	30678771	30679530	+	0	NA	intron (NM_133471, intron 2 of 2).5	intron (NM_133471, intron 2 of 2).5	-6097	NM_001164239	8449		NM_003587	ENSG00000204560	DHX16	DBP2|DDX16|NMOAS|PRO2014|PRP8|PRPF2|Prp2	DEAH-box helicase 16	protein-coding
144952	chr20	37094471	37095400	+	0	NA	intron (NM_183404, intron 1 of 20)	AluSz6|SINE|Alu	1062	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
152425	chr22	20579621	20579930	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	71728	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
148012	chr20	63071771	63072630	+	0	NA	intron (NR_033370, intron 1 of 4)	CpG	-29092	NR_003244	768096		NR_003244		HAR1A	HAR1F|LINC00064|NCRNA00064	highly accelerated region 1A	ncRNA
185749	chr5	132134301	132134630	+	0	NA	Intergenic	L1MC1|LINE|L1	-50411	NR_047470	100861518		NR_047470	ENSG00000237714	P4HA2-AS1	-	P4HA2 antisense RNA 1	ncRNA
10476	chr1	66346801	66347250	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	-7510	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
171920	chr4	853451	853550	+	0	NA	intron (NM_001318134, intron 21 of 24)	intron (NM_001318134, intron 21 of 24)	-27371	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
234451	chrX	17614251	17614350	+	0	NA	intron (NM_001291867, intron 1 of 8)	intron (NM_001291867, intron 1 of 8)	-21200	NM_001136024	4810		NM_198270	ENSG00000188158	NHS	CTRCT40|CXN|SCML1	NHS actin remodeling regulator	protein-coding
77858	chr15	88894001	88894900	+	0	NA	intron (NM_001307952, intron 1 of 5)	intron (NM_001307952, intron 1 of 5)	1094	NM_001307952	145864		NM_178232	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
158754	chr3	9381671	9382030	+	0	NA	intron (NM_001114092, intron 7 of 9)	AluY|SINE|Alu	14773	NR_132781	440944		NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
88177	chr16	81714951	81716100	+	0	NA	Intergenic	L1MA10|LINE|L1	50171	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
198642	chr6	107800401	107801280	+	0	NA	intron (NM_198081, intron 1 of 7)	LTR41C|LTR|ERVL	23473	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
169684	chr3	172040301	172041080	+	0	NA	intron (NM_001135095, intron 1 of 25)	CpG	159	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
62417	chr13	99298251	99298550	+	0	NA	intron (NM_004951, intron 1 of 1)	L1MEi|LINE|L1	8999	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
119550	chr19	40600651	40601640	+	0	NA	promoter-TSS (NM_001042545)	promoter-TSS (NM_001042545)	-224	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
88379	chr16	84605301	84605600	+	0	NA	intron (NM_021149, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	12628	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
26572	chr10	21764921	21765180	+	0	NA	intron (NM_022365, intron 10 of 11)	intron (NM_022365, intron 10 of 11)	230818	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
209051	chr7	74670371	74670730	+	0	NA	intron (NM_001163636, intron 1 of 33)	AluSx3|SINE|Alu	12832	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
6299	chr1	27620421	27620880	+	0	NA	intron (NM_001042747, intron 5 of 12)	MIRb|SINE|MIR	5590	NM_001042747	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
4497	chr1	21658451	21658550	+	0	NA	intron (NM_002885, intron 1 of 24)	AluSx|SINE|Alu	-6602	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
18324	chr1	161181951	161182780	+	0	NA	Intergenic	Intergenic	-4397	NM_001199873	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
116753	chr19	18481421	18481830	+	0	NA	intron (NM_006532, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	40445	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
57697	chr12	122852851	122853050	+	0	NA	intron (NM_001303099, intron 7 of 17)	intron (NM_001303099, intron 7 of 17)	17493	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
230459	chr9	128201651	128201900	+	0	NA	intron (NM_001131015, intron 1 of 17)	MIRb|SINE|MIR	-1604	NM_001374269	1759		NM_004408	ENSG00000106976	DNM1	DEE31|DEE31A|DEE31B|DNM|EIEE31	dynamin 1	protein-coding
227791	chr9	93135571	93136300	+	0	NA	Intergenic	AluSx|SINE|Alu	-1684	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
100457	chr17	61403021	61403500	+	0	NA	intron (NM_005994, intron 3 of 6)	CpG-11509	3417	NM_005994	6909		NM_005994	ENSG00000121068	TBX2	VETD	T-box transcription factor 2	protein-coding
81896	chr16	11717201	11717400	+	0	NA	intron (NM_001303447, intron 5 of 12)	AluSz6|SINE|Alu	25557	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
32023	chr10	101012501	101013430	+	0	NA	intron (NM_001195263, intron 11 of 16)	intron (NM_001195263, intron 11 of 16)	10468	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
191599	chr6	12051771	12052750	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	39948	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
136582	chr2	178112241	178113480	+	0	NA	intron (NM_152945, intron 1 of 9)	CpG	423	NM_152945	129831		NM_152945	ENSG00000155636	RBM45	DRB1|RB-1	RNA binding motif protein 45	protein-coding
117143	chr19	19314521	19314780	+	0	NA	intron (NM_172231, intron 2 of 13)	intron (NM_172231, intron 2 of 13)	5859	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
160944	chr3	36905471	36905950	+	0	NA	intron (NM_014831, intron 1 of 22)	LTR16A1|LTR|ERVL	39344	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
106228	chr18	11907151	11907580	+	0	NA	intron (NR_040241, intron 1 of 11)	MER4B|LTR|ERV1	952	NR_040243	65258		NM_023075	ENSG00000154889	MPPE1	Cdc1|PGAP5	metallophosphoesterase 1	protein-coding
94135	chr17	28316601	28317200	+	0	NA	Intergenic	Intergenic	-2300	NM_014573	27346		NM_014573	ENSG00000109084	TMEM97	MAC30|S2R|sigma2R	transmembrane protein 97	protein-coding
195864	chr6	41536871	41537030	+	0	NA	intron (NR_126415, intron 1 of 1)	L2c|LINE|L2	9293	NR_126417	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
196336	chr6	43170701	43173400	+	0	NA	promoter-TSS (NM_001292001)	promoter-TSS (NM_001292001)	-346	NM_001292001	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
126865	chr2	31997651	31998150	+	0	NA	intron (NR_163995, intron 1 of 7)	L2|LINE|L2	12864	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
80330	chr16	2458001	2458300	+	0	NA	3' UTR (NM_001761, exon 17 of 17)	3' UTR (NM_001761, exon 17 of 17)	-1959	NM_025108	80178		NM_025108	ENSG00000162062	TEDC2	C16orf59	tubulin epsilon and delta complex 2	protein-coding
131647	chr2	97612051	97612350	+	0	NA	Intergenic	Intergenic	-22235	NM_025190	57730		NM_020970	ENSG00000196912	ANKRD36B	KIAA1641	ankyrin repeat domain 36B	protein-coding
201649	chr6	149477551	149478030	+	0	NA	intron (NM_207360, intron 1 of 5)	intron (NM_207360, intron 1 of 5)	7224	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
227460	chr9	90895351	90895450	+	0	NA	intron (NM_001135052, intron 12 of 12)	MER5A1|DNA|hAT-Charlie	67980	NM_001174167	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
37220	chr11	14418951	14419130	+	0	NA	Intergenic	L2b|LINE|L2	-54534	NM_001177314	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
229587	chr9	123373221	123373980	+	0	NA	non-coding (NR_104603, exon 5 of 9)	non-coding (NR_104603, exon 5 of 9)	4821	NR_104603	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
98664	chr17	47837501	47837900	+	0	NA	TTS (NM_001145023)	TTS (NM_001145023)	3573	NM_001145023	90507		NM_138355	ENSG00000141295	SCRN2	Ses2	secernin 2	protein-coding
77410	chr15	83225471	83225630	+	0	NA	Intergenic	L1P2|LINE|L1	-17727	NM_016073	50810		NM_016073	ENSG00000166503	HDGFL3	CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3	HDGF like 3	protein-coding
84182	chr16	29823851	29823950	+	0	NA	intron (NM_005115, intron 1 of 14)	MER5B|DNA|hAT-Charlie	3438	NM_005115	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
8939	chr1	44047471	44048180	+	0	NA	Intergenic	Intergenic	-16363	NM_001328630	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
176705	chr4	101103551	101104180	+	0	NA	intron (NM_001130692, intron 3 of 11)	intron (NM_001130692, intron 3 of 11)	137007	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
24503	chr1	244449371	244449630	+	0	NA	intron (NM_001365073, intron 1 of 12)	intron (NM_001365073, intron 1 of 12)	2409	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
41153	chr11	65599201	65599400	+	0	NA	intron (NM_002419, intron 9 of 9)	intron (NM_002419, intron 9 of 9)	-3500	NM_033348	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
96576	chr17	40487121	40487380	+	0	NA	exon (NM_032865, exon 4 of 13)	exon (NM_032865, exon 4 of 13)	14373	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
30318	chr10	75403071	75403530	+	0	NA	promoter-TSS (NR_024422)	promoter-TSS (NR_024422)	246	NR_110299	100131213		NR_024421	ENSG00000237149	ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	ncRNA
38745	chr11	46938721	46938980	+	0	NA	intron (NM_001278222, intron 1 of 7)	AluJb|SINE|Alu	2089	NR_103472	79096		NM_024113	ENSG00000149179	CSTPP1	C11orf49	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	protein-coding
4007	chr1	18925321	18925580	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	-22651	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
147909	chr20	62898271	62898430	+	0	NA	intron (NM_001193369, intron 6 of 15)	intron (NM_001193369, intron 6 of 15)	-15447	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
16855	chr1	155728901	155729550	+	0	NA	exon (NM_004632, exon 9 of 13)	exon (NM_004632, exon 9 of 13)	-16543	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
126601	chr2	28779601	28779800	+	0	NA	intron (NM_206876, intron 4 of 8)	intron (NM_206876, intron 4 of 8)	27870	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
149457	chr21	31664471	31664900	+	0	NA	intron (NM_000454, intron 2 of 4)	AluYf1|SINE|Alu	4992	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
3225	chr1	13775921	13776180	+	0	NA	intron (NM_015866, intron 7 of 8)	L2c|LINE|L2	26635	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
55082	chr12	96909151	96909830	+	0	NA	intron (NM_001135177, intron 2 of 13)	L2a|LINE|L2	2024	NM_001135175	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
116654	chr19	18341101	18341850	+	0	NA	intron (NM_001329477, intron 1 of 3)	intron (NM_001329477, intron 1 of 3)	877	NM_017712	54858		NM_017712	ENSG00000130517	PGPEP1	PAP-I|PGI|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
90647	chr17	1666921	1668730	+	0	NA	intron (NM_006445, intron 24 of 42)	AluSx4|SINE|Alu	17042	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
99558	chr17	50396571	50398130	+	0	NA	5' UTR (NM_018509, exon 1 of 7)	5' UTR (NM_018509, exon 1 of 7)	173	NM_018509	55379		NM_018509	ENSG00000108829	LRRC59	PRO1855|p34	leucine rich repeat containing 59	protein-coding
155576	chr22	38742271	38743150	+	0	NA	intron (NM_001199580, intron 9 of 18)	intron (NM_001199580, intron 9 of 18)	12756	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
82268	chr16	15149601	15150000	+	0	NA	Intergenic	Intergenic	5202	NR_037466	100500852		NR_037466	ENSG00000264115	MIR3180-4	mir-3180-4	microRNA 3180-4	ncRNA
147659	chr20	62237701	62239930	+	0	NA	intron (NM_144498, intron 1 of 13)	CpG	294	NM_001278649	9885		NM_014835	ENSG00000130703	OSBPL2	DFNA67|DNFA67|ORP-2|ORP2	oxysterol binding protein like 2	protein-coding
217993	chr8	38385901	38387480	+	0	NA	promoter-TSS (NM_001199660)	promoter-TSS (NM_001199660)	214	NM_001363205	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
71785	chr15	21692371	21693330	+	0	NA	Intergenic	L1PA13|LINE|L1	25457	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
51115	chr12	50081271	50081730	+	0	NA	intron (NR_046389, intron 12 of 12)	CpG-5537	-3842	NM_139071	6602		NM_003076	ENSG00000066117	SMARCD1	BAF60A|CRACD1|CSS11|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding
203668	chr7	1002651	1003700	+	0	NA	intron (NR_156697, intron 2 of 4)	intron (NR_156697, intron 2 of 4)	19851	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
228038	chr9	96001071	96001430	+	0	NA	intron (NR_164677, intron 18 of 19)	LTR12C|LTR|ERV1	20561	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
116904	chr19	18780421	18780680	+	0	NA	3' UTR (NM_001098482, exon 15 of 15)	3' UTR (NM_001098482, exon 15 of 15)	10755	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
114845	chr19	13838641	13840900	+	0	NA	non-coding (NR_036515, exon 1 of 1)	non-coding (NR_036515, exon 1 of 1)	-3111	NR_029495	407010		NR_029495	ENSG00000207980	MIR23A	MIRN23A|hsa-mir-23a|miRNA23A|mir-23a	microRNA 23a	ncRNA
218358	chr8	43061101	43061300	+	0	NA	intron (NM_002027, intron 2 of 8)	L1ME3G|LINE|L1	4877	NM_002027	2339		NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, subunit alpha	protein-coding
126951	chr2	33600551	33600650	+	0	NA	Intergenic	AluY|SINE|Alu	-1238	NM_001304538	25940		NM_015475	ENSG00000119812	FAM98A	-	family with sequence similarity 98 member A	protein-coding
114370	chr19	12483571	12483730	+	0	NA	intron (NM_152601, intron 1 of 3)	AluSx3|SINE|Alu	1166	NM_152601	163051		NM_152601	ENSG00000242852	ZNF709	-	zinc finger protein 709	protein-coding
208747	chr7	73521441	73523100	+	0	NA	promoter-TSS (NM_032408)	promoter-TSS (NM_032408)	23	NM_001370402	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
138749	chr2	215269851	215270180	+	0	NA	Intergenic	Intergenic	-42044	NM_004044	471		NM_004044	ENSG00000138363	ATIC	AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding
30582	chr10	80130201	80130400	+	0	NA	Intergenic	AluY|SINE|Alu	-1361	NR_138551	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
69712	chr14	98199321	98199580	+	0	NA	Intergenic	Intergenic	-221326	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
102758	chr17	76276851	76278330	+	0	NA	intron (NM_032134, intron 15 of 18)	(CACA)n|Simple_repeat|Simple_repeat	12242	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
238623	chrX	153952321	153952680	+	0	NA	intron (NM_005334, intron 19 of 25)	intron (NM_005334, intron 19 of 25)	-7857	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
167295	chr3	128665371	128665930	+	0	NA	Intergenic	Intergenic	-14832	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
185776	chr5	132393221	132393880	+	0	NA	intron (NM_003060, intron 8 of 9)	intron (NM_003060, intron 8 of 9)	-17379	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
112347	chr19	5947601	5947800	+	0	NA	intron (NM_007320, intron 2 of 15)	intron (NM_007320, intron 2 of 15)	30440	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
132271	chr2	104845151	104845330	+	0	NA	intron (NR_037883, intron 1 of 3)	CpG	6236	NR_131234	100506421		NR_037883	ENSG00000233639	PANTR1	LINC01158|linc-Brn1a|linc-POU3F3	POU3F3 adjacent non-coding transcript 1	ncRNA
142862	chr20	17650401	17650600	+	0	NA	intron (NM_004587, intron 3 of 24)	intron (NM_004587, intron 3 of 24)	31742	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
101624	chr17	68207871	68208650	+	0	NA	intron (NM_001346471, intron 1 of 6)	LTR12C|LTR|ERV1	2131	NM_001346472	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
46791	chr11	130120571	130120930	+	0	NA	exon (NM_001382531, exon 4 of 18)	exon (NM_001382531, exon 4 of 18)	-39032	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
112223	chr19	5705471	5707500	+	0	NA	intron (NR_076392, intron 8 of 18)	AluSz|SINE|Alu	13661	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
183085	chr5	74035001	74035200	+	0	NA	Intergenic	Intergenic	221554	NM_001244364	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
23315	chr1	228087671	228088450	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	4910	NM_001024227	375		NM_001658	ENSG00000143761	ARF1	PVNH8	ADP ribosylation factor 1	protein-coding
193546	chr6	30611071	30611930	+	0	NA	intron (NM_001376195, intron 2 of 19).6	intron (NM_001376195, intron 2 of 19).6	5743	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
218671	chr8	58103721	58103800	+	0	NA	intron (NM_147189, intron 4 of 4)	intron (NM_147189, intron 4 of 4)	33552	NM_001377998	90362		NM_147189	ENSG00000169122	FAM110B	C8orf72	family with sequence similarity 110 member B	protein-coding
172091	chr4	1049951	1050050	+	0	NA	Intergenic	AluSz6|SINE|Alu	37536	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
135554	chr2	164991871	164992280	+	0	NA	Intergenic	Intergenic	-36550	NM_173512	151258		NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
18968	chr1	168824401	168824600	+	0	NA	Intergenic	Intergenic	37559	NR_024160	79100		NR_024160	ENSG00000225826	LINC00626	-	long intergenic non-protein coding RNA 626	ncRNA
140732	chr2	234450301	234451650	+	0	NA	intron (NR_146988, intron 1 of 2)	intron (NR_146988, intron 1 of 2)	3620	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
105961	chr18	5058751	5059250	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-22182	NR_146900	105371969		NR_146900	ENSG00000265514	LINC01892	-	long intergenic non-protein coding RNA 1892	ncRNA
203696	chr7	1035051	1035350	+	0	NA	intron (NM_032350, intron 2 of 4)	L1P4|LINE|L1	-6768	NR_146965	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
103190	chr17	77456201	77456700	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	2423	NM_001293698	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
50612	chr12	48680171	48680680	+	0	NA	intron (NM_017822, intron 2 of 9)	AluJr4|SINE|Alu	1813	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
120394	chr19	43700851	43701950	+	0	NA	Intergenic	L2a|LINE|L2	-14676	NM_019612	56269		NM_019612	ENSG00000124449	IRGC	CINEMA|IFGGE|IRGC1|Iigp5|R30953_1	immunity related GTPase cinema	protein-coding
228974	chr9	113524301	113525400	+	0	NA	intron (NM_144488, intron 18 of 25)	intron (NM_144488, intron 18 of 25)	-11761	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
114527	chr19	12830371	12831150	+	0	NA	promoter-TSS (NM_001270444)	promoter-TSS (NM_001270444)	-85	NM_001270444	83546		NM_031429	ENSG00000132026	RTBDN	-	retbindin	protein-coding
229806	chr9	125521721	125522380	+	0	NA	intron (NM_001006618, intron 7 of 7)	MIRc|SINE|MIR	185158	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
111258	chr19	3533221	3533730	+	0	NA	intron (NM_001136198, intron 11 of 12)	intron (NM_001136198, intron 11 of 12)	-5682	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
46982	chr12	21871	22030	+	0	NA	intron (NR_130745, intron 2 of 10)	intron (NR_130745, intron 2 of 10)	10065	NR_130745	100288778		NR_130745	ENSG00000226210	WASH8P	-	WAS protein family homolog 8, pseudogene	pseudo
187425	chr5	142014921	142015600	+	0	NA	Intergenic	MIRb|SINE|MIR	-2233	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
2458	chr1	9643471	9644530	+	0	NA	Intergenic	Intergenic	-7731	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
59131	chr13	21401901	21402100	+	0	NA	intron (NM_153251, intron 5 of 11)	FLAM_C|SINE|Alu	-57141	NR_103841	100652865		NR_103840	ENSG00000224429	LINC00539	LINC00422	long intergenic non-protein coding RNA 539	ncRNA
126739	chr2	30201221	30201480	+	0	NA	Intergenic	AluSx3|SINE|Alu	13916	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
101723	chr17	68600251	68601230	+	0	NA	5' UTR (NM_017565, exon 1 of 11)	5' UTR (NM_017565, exon 1 of 11)	627	NM_017565	54757		NM_017565	ENSG00000108950	FAM20A	AI1G|AIGFS|FP2747	FAM20A golgi associated secretory pathway pseudokinase	protein-coding
232455	chr9	136138421	136138800	+	0	NA	Intergenic	Intergenic	19590	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
39166	chr11	57345601	57346400	+	0	NA	intron (NM_002559, intron 1 of 11)	intron (NM_002559, intron 1 of 11)	7648	NM_002559	5024		NM_002559	ENSG00000109991	P2RX3	P2X3	purinergic receptor P2X 3	protein-coding
115682	chr19	16188601	16189800	+	0	NA	intron (NM_014077, intron 2 of 3)	AluSz|SINE|Alu	3790	NM_014077	26017		NM_014077	ENSG00000105058	FAM32A	OTAG-12|OTAG12	family with sequence similarity 32 member A	protein-coding
175215	chr4	56804471	56804850	+	0	NA	Intergenic	Intergenic	16813	NR_073419	6691		NM_021114	ENSG00000128040	SPINK2	HUSI-II|SPGF29	serine peptidase inhibitor Kazal type 2	protein-coding
203940	chr7	1543751	1543850	+	0	NA	TTS (NM_002360)	TTS (NM_002360)	-8920	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
154421	chr22	35338851	35339150	+	0	NA	intron (NR_156428, intron 11 of 13)	MIRb|SINE|MIR	-2201	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
236048	chrX	55907971	55908430	+	0	NA	promoter-TSS (NM_001324105)	promoter-TSS (NM_001324105)	77	NM_001324105	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
47599	chr12	4910701	4911580	+	0	NA	5' UTR (NM_000217, exon 2 of 2)	5' UTR (NM_000217, exon 2 of 2)	1235	NM_000217	3736		NM_000217	ENSG00000111262	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel subfamily A member 1	protein-coding
238724	chrX	154196721	154197050	+	0	NA	TTS (NM_001048181)	TTS (NM_001048181)	14267	NM_001330067	101060233		NM_001330067	ENSG00000269433	OPN1MW3	GCP|GOP|OPN1MW|OPN1MW2	opsin 1, medium wave sensitive 3	protein-coding
40206	chr11	63419001	63419230	+	0	NA	Intergenic	L1PA4|LINE|L1	49330	NM_080866	114571		NM_080866	ENSG00000149742	SLC22A9	HOAT4|OAT4|OAT7|UST3H|ust3	solute carrier family 22 member 9	protein-coding
224595	chr9	20360571	20360730	+	0	NA	intron (NM_001286691, intron 8 of 10)	intron (NM_001286691, intron 8 of 10)	50588	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
157312	chr22	44509721	44509980	+	0	NA	Intergenic	L2|LINE|L2	-11617	NM_032287	84247		NM_032287	ENSG00000188636	RTL6	LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2	retrotransposon Gag like 6	protein-coding
144420	chr20	35360101	35360300	+	0	NA	intron (NM_199487, intron 6 of 8)	intron (NM_199487, intron 6 of 8)	51773	NM_018244	55245		NM_018244	ENSG00000101019	UQCC1	BFZB|C20orf44|CBP3|UQCC	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding
89773	chr16	89468101	89468580	+	0	NA	intron (NM_001256182, intron 1 of 13)	MLT1H|LTR|ERVL-MaLR	22221	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
117392	chr19	19600821	19601400	+	0	NA	intron (NM_025245, intron 1 of 7)	L2b|LINE|L2	17577	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
85359	chr16	50261851	50262350	+	0	NA	Intergenic	Intergenic	-4451	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
109732	chr19	1090801	1092250	+	0	NA	intron (NM_001316323, intron 2 of 6)	intron (NM_001316323, intron 2 of 6)	3850	NM_002695	5434		NM_002695	ENSG00000099817	POLR2E	RPABC1|RPB5|XAP4|hRPB25|hsRPB5	RNA polymerase II, I and III subunit E	protein-coding
81351	chr16	4800051	4800700	+	0	NA	intron (NR_046480, intron 4 of 9)	intron (NR_046480, intron 4 of 9)	2258	NM_024589	79641		NM_024589	ENSG00000067836	ROGDI	KTZS|RAV2|ROGD1	rogdi atypical leucine zipper	protein-coding
59838	chr13	30457651	30457750	+	0	NA	TTS (NM_001313893)	TTS (NM_001313893)	6627	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
45840	chr11	119377301	119378630	+	0	NA	intron (NM_004205, intron 1 of 12)	intron (NM_004205, intron 1 of 12)	3725	NM_004205	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
160022	chr3	18411371	18412450	+	0	NA	intron (NM_001322873, intron 5 of 10)	intron (NM_001322873, intron 5 of 10)	13429	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
58605	chr12	132480801	132481200	+	0	NA	Intergenic	Intergenic	-9151	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171452	chr3	196320221	196321030	+	0	NA	intron (NR_046724, intron 1 of 1)	intron (NR_046724, intron 1 of 1)	2293	NR_121665	100874214		NR_046724	ENSG00000235897	TM4SF19-AS1	-	TM4SF19 antisense RNA 1	ncRNA
2289	chr1	8958971	8959730	+	0	NA	intron (NM_001270502, intron 2 of 5)	AluSq2|SINE|Alu	13482	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
105855	chr18	3056271	3056630	+	0	NA	Intergenic	AluYm1|SINE|Alu	-43306	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
7273	chr1	32370601	32370980	+	0	NA	intron (NR_125352, intron 9 of 11)	AluSc8|SINE|Alu	8251	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
69224	chr14	92747221	92747880	+	0	NA	intron (NM_001008530, intron 1 of 14)	intron (NM_001008530, intron 1 of 14)	1077	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
8617	chr1	41664921	41665350	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-180452	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
83493	chr16	27417251	27417880	+	0	NA	intron (NM_181079, intron 2 of 9)	Tigger3b|DNA|TcMar-Tigger	-9706	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
134524	chr2	143544721	143545300	+	0	NA	intron (NM_018460, intron 10 of 13)	intron (NM_018460, intron 10 of 13)	-392057	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
107123	chr18	35088021	35088280	+	0	NA	intron (NR_046177, intron 2 of 6)	L2a|LINE|L2	46737	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
116248	chr19	17581221	17581480	+	0	NA	exon (NM_024656, exon 12 of 12)	exon (NM_024656, exon 12 of 12)	25701	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
10038	chr1	58378771	58378930	+	0	NA	intron (NM_001379461, intron 3 of 20)	L1PA2|LINE|L1	-128347	NM_001353980	1600		NM_021080	ENSG00000173406	DAB1	SCA37	DAB adaptor protein 1	protein-coding
11736	chr1	91927221	91927980	+	0	NA	Intergenic	AluJr|SINE|Alu	-21598	NM_001195684	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
225580	chr9	36086251	36086600	+	0	NA	TTS (NM_001316348)	TTS (NM_001316348)	49512	NM_021111	8434		NM_021111	ENSG00000122707	RECK	ST15	reversion inducing cysteine rich protein with kazal motifs	protein-coding
161391	chr3	41207121	41208380	+	0	NA	intron (NM_001098210, intron 1 of 15)	L2b|LINE|L2	8245	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
85217	chr16	47463521	47463780	+	0	NA	intron (NM_000293, intron 1 of 30)	intron (NM_000293, intron 1 of 30)	2319	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
64128	chr14	22854721	22855180	+	0	NA	Intergenic	AluSc|SINE|Alu	-16790	NM_014045	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
231058	chr9	129635021	129635280	+	0	NA	3' UTR (NM_001202403, exon 5 of 5)	3' UTR (NM_001202403, exon 5 of 5)	7001	NM_177999	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
29742	chr10	72134621	72135600	+	0	NA	intron (NM_001369103, intron 6 of 9)	intron (NM_001369103, intron 6 of 9)	-46078	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
8671	chr1	41897701	41898830	+	0	NA	intron (NR_038260, intron 1 of 2)	intron (NR_038260, intron 1 of 2)	20657	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
115557	chr19	15554921	15555200	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	46535	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
58104	chr12	124763351	124764200	+	0	NA	Intergenic	Intergenic	75896	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
176442	chr4	89286901	89287500	+	0	NA	intron (NM_198281, intron 1 of 1)	L2a|LINE|L2	20600	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
70567	chr14	102594521	102595000	+	0	NA	intron (NM_015156, intron 2 of 11)	intron (NM_015156, intron 2 of 11)	2111	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
40866	chr11	65089221	65089480	+	0	NA	promoter-TSS (NM_001242631)	promoter-TSS (NM_001242631)	-240	NM_001282448	100130348		NM_001242631	ENSG00000187066	TMEM262	-	transmembrane protein 262	protein-coding
42303	chr11	68457051	68458000	+	0	NA	Intergenic	Intergenic	-3227	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
41335	chr11	65918591	65920680	+	0	NA	promoter-TSS (NM_031450)	promoter-TSS (NM_031450)	209	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
234988	chrX	39724571	39725030	+	0	NA	Intergenic	Intergenic	63584	NR_037501	100500822		NR_037501	ENSG00000263730	MIR3937	-	microRNA 3937	ncRNA
64821	chr14	35045451	35047580	+	0	NA	exon (NM_173607, exon 1 of 5)	exon (NM_173607, exon 1 of 5)	243	NM_173607	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
96951	chr17	42189371	42189530	+	0	NA	3' UTR (NM_001142623, exon 10 of 10)	3' UTR (NM_001142623, exon 10 of 10)	-3998	NM_001524	3060		NM_001524	ENSG00000161610	HCRT	NRCLP1|OX|PPOX	hypocretin neuropeptide precursor	protein-coding
211629	chr7	106070321	106070650	+	0	NA	Intergenic	Intergenic	41827	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
89113	chr16	88496121	88496780	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	27532	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
166819	chr3	122733021	122733450	+	0	NA	Intergenic	L1PA4|LINE|L1	52396	NM_017554	54625		NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	poly(ADP-ribose) polymerase family member 14	protein-coding
132344	chr2	105598671	105599030	+	0	NA	intron (NR_038891, intron 2 of 3)	(T)n|Simple_repeat|Simple_repeat	11709	NR_038891	285000		NR_038891		LINC02946	RMEL1	long intergenic non-protein coding RNA 2946	ncRNA
23488	chr1	228638721	228640120	+	0	NA	Intergenic	5S|rRNA|rRNA	-5227	NR_037962	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
225669	chr9	36464901	36465100	+	0	NA	Intergenic	L1MB7|LINE|L1	-63802	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
128795	chr2	62311601	62312180	+	0	NA	Intergenic	Intergenic	96369	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
163877	chr3	52504821	52505080	+	0	NA	intron (NM_015136, intron 12 of 68)	intron (NM_015136, intron 12 of 68)	9612	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
38827	chr11	47308821	47309280	+	0	NA	intron (NR_164842, intron 25 of 33)	intron (NR_164842, intron 25 of 33)	-36940	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
155451	chr22	38472051	38472350	+	0	NA	intron (NM_006855, intron 1 of 4)	AluSx1|SINE|Alu	4104	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
180910	chr5	34195601	34195800	+	0	NA	intron (NR_146599, intron 2 of 11)	AluY|SINE|Alu	6119	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
78544	chr15	92969121	92970030	+	0	NA	intron (NM_001271, intron 17 of 38)	L1MC5|LINE|L1	65176	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
179035	chr4	165212601	165212800	+	0	NA	intron (NM_001161522, intron 1 of 13)	MIRb|SINE|MIR	2681	NM_001161522	11275		NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
97623	chr17	44168271	44169000	+	0	NA	Intergenic	Intergenic	-2069	NM_080863	92591		NM_080863	ENSG00000161664	ASB16	-	ankyrin repeat and SOCS box containing 16	protein-coding
232023	chr9	133370701	133372450	+	0	NA	intron (NM_001280791, intron 1 of 5)	intron (NM_001280791, intron 1 of 5)	4485	NM_033161	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
15043	chr1	148385621	148386180	+	0	NA	Intergenic	U1|snRNA|snRNA	-2382	NR_106967	102466225		NR_106967	ENSG00000278596	MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
14938	chr1	147617971	147618530	+	0	NA	intron (NM_004326, intron 7 of 9)	intron (NM_004326, intron 7 of 9)	52274	NR_136634	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
124268	chr19	57769351	57770730	+	0	NA	intron (NM_001077426, intron 1 of 1)	CpG	364	NM_017652	54807		NM_017652	ENSG00000083828	ZNF586	-	zinc finger protein 586	protein-coding
79000	chr15	101974421	101974930	+	0	NA	intron (NR_003659, intron 8 of 10)	intron (NR_003659, intron 8 of 10)	1151	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
178691	chr4	152534401	152535300	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	183	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
45910	chr11	120564951	120565050	+	0	NA	intron (NM_001282470, intron 1 of 19)	CpG	564	NM_001282470	2900		NM_014619	ENSG00000149403	GRIK4	EAA1|GRIK|GluK4|GluK4-2|KA1	glutamate ionotropic receptor kainate type subunit 4	protein-coding
102570	chr17	75862471	75862830	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-6214	NM_001348170	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
212071	chr7	115009971	115010950	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	-68498	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
230325	chr9	127975701	127976000	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	5139	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
187053	chr5	140039771	140040130	+	0	NA	intron (NM_013981, intron 1 of 9)	intron (NM_013981, intron 1 of 9)	3349	NM_004883	9542		NM_004883	ENSG00000158458	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
22447	chr1	220810151	220810780	+	0	NA	intron (NM_022746, intron 6 of 6)	intron (NM_022746, intron 6 of 6)	-13806	NR_157260	106481171		NR_157260		RNU6ATAC35P	-	RNA, U6atac small nuclear 35, pseudogene	pseudo
218727	chr8	58723001	58723400	+	0	NA	Intergenic	Intergenic	-63347	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
142998	chr20	20362851	20363150	+	0	NA	Intergenic	Intergenic	-5104	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
31584	chr10	97344871	97345430	+	0	NA	Intergenic	AluSg7|SINE|Alu	-10421	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
14289	chr1	143786321	143787000	+	0	NA	Intergenic	Intergenic	-5835	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
66392	chr14	61495671	61496030	+	0	NA	intron (NM_006255, intron 10 of 13)	L2a|LINE|L2	74344	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
129303	chr2	68595071	68595600	+	0	NA	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-48244	NM_138964	10887		NM_138964	ENSG00000169618	PROKR1	GPR73|GPR73a|PK-R1|PKR1|ZAQ	prokineticin receptor 1	protein-coding
104825	chr17	81814451	81814900	+	0	NA	TTS (NM_000160)	TTS (NM_000160)	10525	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
160208	chr3	23914951	23915430	+	0	NA	intron (NM_001377364, intron 1 of 5)	MLT1D|LTR|ERVL-MaLR	-1355	NM_001253379	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
99746	chr17	50942721	50943180	+	0	NA	Intergenic	AluJb|SINE|Alu	-74972	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
94353	chr17	28904171	28904730	+	0	NA	TTS (NM_001290131)	TTS (NM_001290131)	-1371	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
78052	chr15	90087541	90088630	+	0	NA	intron (NM_002168, intron 5 of 10)	(TTTCT)n|Simple_repeat|Simple_repeat	-5878	NR_146321	109729181		NR_146321	ENSG00000259291	ZNF710-AS1	-	ZNF710 antisense RNA 1	ncRNA
65468	chr14	51844371	51844930	+	0	NA	Intergenic	Intergenic	-15962	NM_001243773	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
17363	chr1	156511821	156512080	+	0	NA	Intergenic	Intergenic	-11175	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
29308	chr10	69326801	69327000	+	0	NA	intron (NM_000188, intron 1 of 17)	L1ME3Cz|LINE|L1	8053	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
64783	chr14	34824201	34824750	+	0	NA	intron (NM_013448, intron 4 of 26)	intron (NM_013448, intron 4 of 26)	-49716	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
65100	chr14	41607971	41608330	+	0	NA	non-coding (NR_144389, exon 1 of 7)	non-coding (NR_144389, exon 1 of 7)	1294	NM_001330106	145581		NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
183804	chr5	82356071	82356230	+	0	NA	Intergenic	Intergenic	76688	NM_001017971	92270		NM_001017971		ATP6AP1L	-	ATPase H+ transporting accessory protein 1 like (pseudogene)	pseudo
145450	chr20	43588471	43588830	+	0	NA	Intergenic	MIRb|SINE|MIR	-2287	NM_016004	51098		NM_016004	ENSG00000101052	IFT52	C20orf9|CGI-53|NGD2|NGD5	intraflagellar transport 52	protein-coding
75072	chr15	64355321	64356850	+	0	NA	promoter-TSS (NM_022048)	promoter-TSS (NM_022048)	88	NM_001329606	53944		NM_022048	ENSG00000169118	CSNK1G1	CK1gamma1	casein kinase 1 gamma 1	protein-coding
187359	chr5	141704721	141705700	+	0	NA	Intergenic	L2a|LINE|L2	-22980	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
102243	chr17	75256701	75257300	+	0	NA	intron (NM_001291641, intron 1 of 17)	HERVH-int|LTR|ERV1	4606	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
82101	chr16	14521101	14521700	+	0	NA	intron (NM_002582, intron 21 of 23)	intron (NM_002582, intron 21 of 23)	108860	NM_001134477	5073		NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding
159326	chr3	13041851	13042150	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	31429	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
26323	chr10	15122551	15123050	+	0	NA	intron (NM_004808, intron 8 of 11)	Charlie1b|DNA|hAT-Charlie	25445	NM_001097590	10557		NM_006414	ENSG00000152464	RPP38	-	ribonuclease P/MRP subunit p38	protein-coding
232329	chr9	135281971	135282330	+	0	NA	Intergenic	Intergenic	-61099	NM_173520	157927		NM_173520	ENSG00000178243	LINC02907	C9orf62	long intergenic non-protein coding RNA 2907	ncRNA
26475	chr10	17662621	17662880	+	0	NA	intron (NM_001324287, intron 2 of 11)	MIR|SINE|MIR	18599	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
102327	chr17	75401771	75402300	+	0	NA	intron (NM_203506, intron 1 of 4)	MER47A|DNA|TcMar-Tigger	3643	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
20021	chr1	185306221	185306880	+	0	NA	intron (NM_006469, intron 7 of 14)	intron (NM_006469, intron 7 of 14)	10693	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
111644	chr19	4185301	4185500	+	0	NA	intron (NM_133475, intron 1 of 21)	intron (NM_133475, intron 1 of 21)	2046	NM_133475	170961		NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
49311	chr12	21509601	21510200	+	0	NA	intron (NM_016072, intron 3 of 4)	L2c|LINE|L2	8111	NM_016072	51026		NM_016072	ENSG00000111711	GOLT1B	CGI-141|GCT2|GOT1|GOT1B|YMR292W	golgi transport 1B	protein-coding
124296	chr19	57867121	57867380	+	0	NA	promoter-TSS (NR_144562)	promoter-TSS (NR_144562)	-510	NR_144562	100874260		NR_144562		UBE2CP5	-	ubiquitin conjugating enzyme E2 C pseudogene 5	pseudo
106002	chr18	7945621	7946080	+	0	NA	intron (NM_002845, intron 5 of 30)	intron (NM_002845, intron 5 of 30)	-1025	NM_001378146	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
222638	chr8	141126471	141127350	+	0	NA	Intergenic	Intergenic	-1679	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
234549	chrX	19722271	19722880	+	0	NA	intron (NM_001353892, intron 3 of 17)	(GT)n|Simple_repeat|Simple_repeat	-51576	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
93067	chr17	17504951	17505330	+	0	NA	TTS (NM_001267551)	TTS (NM_001267551)	-8745	NM_001199989	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
177973	chr4	139044971	139045300	+	0	NA	exon (NM_012118, exon 3 of 3)	exon (NM_012118, exon 3 of 3)	29354	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
82808	chr16	21472771	21472930	+	0	NA	intron (NR_027155, intron 7 of 28)	intron (NR_027155, intron 7 of 28)	-28676	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
104547	chr17	81304201	81304800	+	0	NA	non-coding (NR_038080, exon 4 of 4)	non-coding (NR_038080, exon 4 of 4)	4748	NR_038080	284185		NM_178519		LINC00482	C17orf55	long intergenic non-protein coding RNA 482	ncRNA
4238	chr1	19508851	19509230	+	0	NA	Intergenic	MER41B|LTR|ERV1	-23501	NM_001206540	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
51614	chr12	52879271	52880400	+	0	NA	Intergenic	Intergenic	19149	NR_162090	113218482		NR_162090		MIR9898	-	microRNA 9898	ncRNA
69172	chr14	92613851	92613950	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	37666	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
142966	chr20	19924371	19924530	+	0	NA	intron (NM_001242581, intron 2 of 11)	intron (NM_001242581, intron 2 of 11)	37929	NM_001242581	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
27085	chr10	27285101	27285380	+	0	NA	intron (NR_138082, intron 3 of 4)	intron (NR_138082, intron 3 of 4)	26478	NR_138082	101060171		NR_138082		ODAD2P1	ARMC4P1	outer dynein arm docking complex subunit 2 pseudogene 1	pseudo
117675	chr19	24089471	24089630	+	0	NA	intron (NM_001278678, intron 1 of 1)	intron (NM_001278678, intron 1 of 1)	2363	NM_203282	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
129009	chr2	64858751	64859250	+	0	NA	intron (NR_110224, intron 1 of 4)	(TTTGC)n|Simple_repeat|Simple_repeat	4631	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
121941	chr19	48462821	48463080	+	0	NA	intron (NM_013348, intron 2 of 2)	intron (NM_013348, intron 2 of 2)	-6258	NM_017457	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
51775	chr12	53334401	53334680	+	0	NA	intron (NM_001300837, intron 2 of 2)	intron (NM_001300837, intron 2 of 2)	1236	NM_152860	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
213920	chr7	142560871	142561030	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	86423	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
37421	chr11	17288501	17288950	+	0	NA	intron (NM_001352666, intron 3 of 13)	AluSx|SINE|Alu	11755	NM_001352672	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
221191	chr8	120736471	120737030	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-24503	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
56010	chr12	110316571	110316950	+	0	NA	intron (NM_170665, intron 5 of 19)	L2b|LINE|L2	35513	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
229652	chr9	124285921	124287180	+	0	NA	intron (NM_001166168, intron 1 of 9)	intron (NM_001166168, intron 1 of 9)	-5421	NM_001166171	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
63345	chr13	114026071	114026930	+	0	NA	intron (NM_001320822, intron 7 of 23).2	intron (NM_001320822, intron 7 of 23).2	51455	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
111743	chr19	4361601	4362080	+	0	NA	intron (NM_001199943, intron 8 of 8)	intron (NM_001199943, intron 8 of 8)	18278	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
206909	chr7	38107521	38107930	+	0	NA	Intergenic	Intergenic	-70520	NM_001363347	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
86543	chr16	67182001	67182200	+	0	NA	intron (NM_001369685, intron 2 of 8)	AluSp|SINE|Alu	1863	NM_001369680	653319		NM_001040715	ENSG00000196123	MATCAP1	KIAA0895L|TMCP1	microtubule associated tyrosine carboxypeptidase 1	protein-coding
136907	chr2	189633401	189633600	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-27899	NM_001353494	110599588		NM_001353493	ENSG00000286053	ASDURF	ASNSD1|ASNSD1-SEP|NS3TP1	ASNSD1 upstream open reading frame	protein-coding
153139	chr22	23764551	23764650	+	0	NA	intron (NM_001376903, intron 3 of 5)	intron (NM_001376903, intron 3 of 5)	1610	NM_001376903	150248		NM_182520	ENSG00000169314	C22orf15	N27C7-3	chromosome 22 open reading frame 15	protein-coding
24921	chr10	1069721	1070080	+	0	NA	intron (NM_014023, intron 1 of 13)	L1MC4a|LINE|L1	-13196	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
98190	chr17	46115101	46115300	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSq2|SINE|Alu	77582	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
77211	chr15	80989021	80990330	+	0	NA	exon (NM_015154, exon 1 of 3)	exon (NM_015154, exon 1 of 3)	144	NR_126327	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
94634	chr17	30093521	30094080	+	0	NA	intron (NM_198529, intron 22 of 22)	intron (NM_198529, intron 22 of 22)	-23007	NM_001261467	84081		NM_032141	ENSG00000126653	NSRP1	CCDC55|HSPC095|NEDSSBA|NSrp70	nuclear speckle splicing regulatory protein 1	protein-coding
119778	chr19	41311251	41311350	+	0	NA	intron (NM_001346100, intron 1 of 4)	AluJr|SINE|Alu	823	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
87036	chr16	68279851	68280150	+	0	NA	intron (NM_001076785, intron 4 of 11)	intron (NM_001076785, intron 4 of 11)	15474	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
30485	chr10	79250451	79250750	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-96869	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
229902	chr9	126564221	126564680	+	0	NA	Intergenic	Intergenic	-49478	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
67696	chr14	73242571	73243250	+	0	NA	intron (NM_173462, intron 2 of 25)	intron (NM_173462, intron 2 of 25)	3091	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
136657	chr2	180196551	180196650	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-189303	NM_020943	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
206659	chr7	36285671	36286720	+	0	NA	intron (NM_030636, intron 5 of 7)	intron (NM_030636, intron 5 of 7)	81045	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
148157	chr20	63518601	63519130	+	0	NA	Intergenic	Intergenic	-1876	NR_148427	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
98165	chr17	46059451	46059750	+	0	NA	intron (NM_015443, intron 6 of 14).2	AluSx|SINE|Alu	60350	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
6470	chr1	28306471	28306630	+	0	NA	Intergenic	Intergenic	-22490	NM_001127350	54797		NM_017638	ENSG00000130772	MED18	SRB5|p28b	mediator complex subunit 18	protein-coding
44680	chr11	110907701	110907930	+	0	NA	Intergenic	Intergenic	189503	NR_149131	105369490		NR_149131	ENSG00000271584	LINC02550	-	long intergenic non-protein coding RNA 2550	ncRNA
150967	chr21	44321901	44322630	+	0	NA	intron (NM_001002021, intron 17 of 24)	intron (NM_001002021, intron 17 of 24)	16073	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
580	chr1	1275201	1275700	+	0	NA	Intergenic	Intergenic	-1596	NM_194458	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
52416	chr12	55772321	55772980	+	0	NA	intron (NM_033082, intron 9 of 10)	intron (NM_033082, intron 9 of 10)	29528	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
2593	chr1	9867221	9867980	+	0	NA	intron (NM_020248, intron 5 of 5)	intron (NM_020248, intron 5 of 5)	42669	NM_020248	56998		NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
163658	chr3	52199451	52199750	+	0	NA	intron (NM_000688, intron 3 of 11)	MIR|SINE|MIR	1440	NM_000688	211		NM_000688	ENSG00000023330	ALAS1	ALAS|ALAS-H|ALAS3|ALASH|MIG4	5'-aminolevulinate synthase 1	protein-coding
183210	chr5	76174251	76174430	+	0	NA	intron (NM_014979, intron 2 of 12)	CpG	90957	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
83999	chr16	29452051	29452150	+	0	NA	intron (NM_001320624, intron 1 of 3)	AluSp|SINE|Alu	2105	NR_135304	552900		NM_001031827	ENSG00000183336	BOLA2	BOLA2A|BOLA2B|My016	bolA family member 2	protein-coding
104792	chr17	81724851	81725150	+	0	NA	Intergenic	AluSq|SINE|Alu	12716	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
175201	chr4	56648421	56648880	+	0	NA	3' UTR (NM_032495, exon 4 of 4)	3' UTR (NM_032495, exon 4 of 4)	7872	NM_139211	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
229535	chr9	122846451	122847300	+	0	NA	3' UTR (NM_001354482, exon 20 of 20)	3' UTR (NM_001354482, exon 20 of 20)	-18287	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
192199	chr6	17703171	17703550	+	0	NA	intron (NM_001278209, intron 1 of 22)	intron (NM_001278209, intron 1 of 22)	-2770	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
16380	chr1	154390101	154390300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-15143	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
163908	chr3	52533041	52534550	+	0	NA	promoter-TSS (NM_001134231)	promoter-TSS (NM_001134231)	62	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
20856	chr1	201945301	201945650	+	0	NA	intron (NM_012134, intron 1 of 2)	intron (NM_012134, intron 1 of 2)	1073	NM_012134	25802		NM_012134	ENSG00000163431	LMOD1	1D|64kD|D1|MMIHS3|SM-LMOD|SMLMOD	leiomodin 1	protein-coding
196203	chr6	42750201	42750800	+	0	NA	intron (NM_001318819, intron 1 of 13)	L1MC5|LINE|L1	3513	NM_001318819	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
66022	chr14	58270571	58270730	+	0	NA	intron (NR_038123, intron 8 of 9)	intron (NR_038123, intron 8 of 9)	-17383	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
12225	chr1	100409401	100409880	+	0	NA	intron (NM_001319210, intron 4 of 16)	THE1B-int|LTR|ERVL-MaLR	57134	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
88717	chr16	85949821	85950080	+	0	NA	Intergenic	L2a|LINE|L2	31603	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
192042	chr6	16485251	16485350	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	246713	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
223171	chr8	143545401	143546300	+	0	NA	Intergenic	LTR10F|LTR|ERV1	-4403	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
3682	chr1	16507771	16508230	+	0	NA	Intergenic	AluSz|SINE|Alu	6285	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
151028	chr21	44517021	44517500	+	0	NA	promoter-TSS (NR_026547)	promoter-TSS (NR_026547)	45	NR_026548	114043		NM_153204		TSPEAR-AS2	C21orf90	TSPEAR antisense RNA 2	ncRNA
184302	chr5	96875751	96877630	+	0	NA	intron (NM_001329229, intron 1 of 17)	intron (NM_001329229, intron 1 of 17)	190	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
142612	chr20	5596621	5596880	+	0	NA	intron (NM_019593, intron 3 of 19)	intron (NM_019593, intron 3 of 19)	14256	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
128822	chr2	63048471	63048950	+	0	NA	promoter-TSS (NR_027069)	promoter-TSS (NR_027069)	-189	NR_033389	100132215		NR_027069	ENSG00000231609	EHBP1-AS1	-	EHBP1 antisense RNA 1	ncRNA
102821	chr17	76457521	76457830	+	0	NA	intron (NM_001166579, intron 1 of 6)	L2a|LINE|L2	4324	NM_001166579	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
195136	chr6	35684451	35685050	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluJb|SINE|Alu	4165	NM_001145776	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
224407	chr9	14749771	14750130	+	0	NA	intron (NR_163242, intron 5 of 11)	intron (NR_163242, intron 5 of 11)	-27217	NM_005454	9350		NM_005454	ENSG00000147869	CER1	DAND4	cerberus 1, DAN family BMP antagonist	protein-coding
230541	chr9	128395351	128395650	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluSz6|SINE|Alu	-2786	NR_029837	407003		NR_029837	ENSG00000284185	MIR219A2	MIR219-2|MIRN219-2|hsa-mir-219a-2|mir-219a-2	microRNA 219a-2	ncRNA
175080	chr4	54097771	54097930	+	0	NA	Intergenic	Intergenic	-2313	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
41213	chr11	65660871	65661300	+	0	NA	intron (NM_001243984, intron 4 of 10)	AluJo|SINE|Alu	1831	NM_021975	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
39888	chr11	62498371	62498530	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	47214	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
56641	chr12	118377831	118378900	+	0	NA	intron (NM_022491, intron 1 of 11)	MER2|DNA|TcMar-Tigger	1810	NM_022491	64426		NM_022491	ENSG00000111707	SUDS3	SAP45|SDS3	SDS3 homolog, SIN3A corepressor complex component	protein-coding
3211	chr1	13760521	13761250	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	11470	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
197097	chr6	57046321	57047480	+	0	NA	5' UTR (NM_001286276, exon 1 of 4)	5' UTR (NM_001286276, exon 1 of 4)	153	NM_001286276	57691		NM_020931	ENSG00000168116	KIAA1586	-	KIAA1586	protein-coding
169061	chr3	153285271	153285630	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	123224	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
39181	chr11	57440921	57441000	+	0	NA	Intergenic	Intergenic	-13380	NM_017611	29015		NM_014096	ENSG00000134802	SLC43A3	EEG1|ENBT1|FOAP-13|PRO1659|SEEEG-1	solute carrier family 43 member 3	protein-coding
51255	chr12	51027471	51027630	+	0	NA	intron (NM_001174125, intron 1 of 15)	intron (NM_001174125, intron 1 of 15)	692	NM_001174125	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
235421	chrX	45768601	45769400	+	0	NA	Intergenic	Intergenic	-21876	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
145922	chr20	46009771	46009930	+	0	NA	intron (NM_004994, intron 1 of 12)	intron (NM_004994, intron 1 of 12)	942	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
68049	chr14	75234321	75234930	+	0	NA	Intergenic	Intergenic	-44203	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
9429	chr1	48438051	48438150	+	0	NA	intron (NM_001286238, intron 3 of 12)	LTR12B|LTR|ERV1	34104	NM_001286238	54558		NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
90852	chr17	2362521	2363250	+	0	NA	exon (NM_001098509, exon 5 of 23)	exon (NM_001098509, exon 5 of 23)	25384	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
152053	chr22	19632271	19632430	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-65511	NR_024381	150185		NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
150355	chr21	42185971	42186130	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-13639	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
72643	chr15	38492651	38493100	+	0	NA	intron (NM_001306086, intron 14 of 14)	intron (NM_001306086, intron 14 of 14)	38748	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
215473	chr7	158332421	158333180	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	200013	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
214075	chr7	143405321	143405980	+	0	NA	intron (NM_005232, intron 2 of 17)	intron (NM_005232, intron 2 of 17)	-2163	NR_033897	285965		NR_033897	ENSG00000229153	EPHA1-AS1	-	EPHA1 antisense RNA 1	ncRNA
64056	chr14	22544851	22545350	+	0	NA	Intergenic	Intergenic	11962	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
107770	chr18	50969671	50969830	+	0	NA	intron (NM_018696, intron 1 of 3)	L1MC5|LINE|L1	1710	NM_018696	55520		NM_018696	ENSG00000141642	ELAC1	D29	elaC ribonuclease Z 1	protein-coding
210220	chr7	99325151	99326930	+	0	NA	intron (NM_001190996, intron 1 of 9)	CpG	142	NM_006409	10552		NM_006409	ENSG00000241685	ARPC1A	Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L	actin related protein 2/3 complex subunit 1A	protein-coding
195614	chr6	37696601	37697300	+	0	NA	5' UTR (NM_153487, exon 1 of 17)	5' UTR (NM_153487, exon 1 of 17)	933	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
126615	chr2	28794951	28795850	+	0	NA	intron (NM_206876, intron 8 of 8)	L1PA16|LINE|L1	-15434	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
30296	chr10	75228101	75228600	+	0	NA	intron (NM_003375, intron 9 of 10)	AluJb|SINE|Alu	7607	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
145044	chr20	38356021	38356600	+	0	NA	intron (NM_004139, intron 5 of 14)	(AC)n|Simple_repeat|Simple_repeat	9828	NM_004139	3929		NM_004139	ENSG00000129988	LBP	BPIFD2	lipopolysaccharide binding protein	protein-coding
37509	chr11	18522401	18523050	+	0	NA	intron (NM_006292, intron 1 of 9)	L2a|LINE|L2	4217	NM_006292	7251		NM_006292	ENSG00000074319	TSG101	TSG10|VPS23	tumor susceptibility 101	protein-coding
198890	chr6	109484801	109485100	+	0	NA	Intergenic	Intergenic	-1713	NM_001164313	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
239356	chrY	19568771	19569000	+	0	NA	intron (NR_045128, intron 1 of 9)	intron (NR_045128, intron 1 of 9)	1527	NR_045129	246126		NM_001005852	ENSG00000291033	TXLNGY	CYorf15A|CYorf15B|TXLNG2P	taxilin gamma Y-linked (pseudogene)	pseudo
96248	chr17	39827771	39828130	+	0	NA	intron (NM_001257408, intron 2 of 6)	MER21-int|LTR|ERVL	36238	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
183037	chr5	73234771	73234930	+	0	NA	Intergenic	Intergenic	-32889	NR_134291	340090		NR_134291	ENSG00000287090	LOC340090	-	uncharacterized LOC340090	ncRNA
152359	chr22	20474721	20475580	+	0	NA	intron (NM_032775, intron 2 of 6)	intron (NM_032775, intron 2 of 6)	20645	NM_032775	84861		NM_032775	ENSG00000099910	KLHL22	KELCHL	kelch like family member 22	protein-coding
33527	chr10	119222701	119222900	+	0	NA	intron (NM_005308, intron 1 of 15)	MIR3|SINE|MIR	15229	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
12672	chr1	109419271	109419900	+	0	NA	intron (NM_001199772, intron 1 of 7)	AluSg|SINE|Alu	6863	NM_001199772	5686		NM_002790	ENSG00000143106	PSMA5	PSC5|ZETA	proteasome 20S subunit alpha 5	protein-coding
161436	chr3	42015221	42015700	+	0	NA	Intergenic	MIRc|SINE|MIR	-53357	NR_136342	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
126488	chr2	28397551	28397650	+	0	NA	intron (NM_005253, intron 1 of 3)	intron (NM_005253, intron 1 of 3)	-2928	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
153267	chr22	24140771	24140930	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-40637	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
26093	chr10	13224571	13224750	+	0	NA	intron (NM_001303119, intron 2 of 2)	intron (NM_001303119, intron 2 of 2)	7391	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
60956	chr13	46557771	46558150	+	0	NA	intron (NM_015116, intron 1 of 18)	AluJb|SINE|Alu	4790	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
192924	chr6	27689921	27690180	+	0	NA	Intergenic	Intergenic	-3985	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
161897	chr3	45965421	45966800	+	0	NA	intron (NM_024513, intron 8 of 17)	intron (NM_024513, intron 8 of 17)	22646	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
195713	chr6	38944921	38945050	+	0	NA	intron (NM_001371, intron 78 of 91)	(TAACCC)n|Simple_repeat|Simple_repeat	8122	NR_038401	100131047		NR_038401		DNAH8-AS1	-	DNAH8 antisense RNA 1	ncRNA
47747	chr12	6530271	6530430	+	0	NA	intron (NM_014865, intron 29 of 31)	L1MC1|LINE|L1	-4167	NR_152150	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
73844	chr15	49619471	49619630	+	0	NA	intron (NM_152647, intron 1 of 15)	intron (NM_152647, intron 1 of 15)	1268	NM_001330293	196951		NM_152647	ENSG00000166262	FAM227B	C15orf33	family with sequence similarity 227 member B	protein-coding
13697	chr1	116755951	116756450	+	0	NA	intron (NM_001328609, intron 2 of 4)	intron (NM_001328609, intron 2 of 4)	1770	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
190195	chr5	178210171	178210630	+	0	NA	intron (NM_031266, intron 7 of 7)	MIRb|SINE|MIR	5867	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
50532	chr12	47889051	47889500	+	0	NA	intron (NM_000376, intron 1 of 9)	intron (NM_000376, intron 1 of 9)	15719	NM_001374661	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
213452	chr7	138751971	138754230	+	0	NA	intron (NM_130840, intron 9 of 20)	MLT1C|LTR|ERVL-MaLR	20937	NM_130841	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
136878	chr2	189104901	189105200	+	0	NA	intron (NM_000393, intron 2 of 53)	MER94|DNA|hAT-Blackjack	28061	NR_036076	100422908		NR_036076	ENSG00000264725	MIR3129	mir-3129	microRNA 3129	ncRNA
144856	chr20	36896001	36896400	+	0	NA	intron (NM_001363733, intron 15 of 15)	AluY|SINE|Alu	20062	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
20391	chr1	198169501	198170350	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	12927	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
234576	chrX	19758521	19759030	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	40998	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
203818	chr7	1403571	1404000	+	0	NA	Intergenic	Intergenic	55685	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
88925	chr16	87825071	87825680	+	0	NA	Intergenic	Intergenic	9285	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
6583	chr1	28756671	28757230	+	0	NA	intron (NM_016258, intron 4 of 4)	intron (NM_016258, intron 4 of 4)	20010	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
191708	chr6	13673721	13673980	+	0	NA	intron (NM_005493, intron 2 of 13)	AluJb|SINE|Alu	37985	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
163371	chr3	50479721	50479980	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	23784	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
36701	chr11	8906721	8906980	+	0	NA	intron (NM_005418, intron 1 of 22)	intron (NM_005418, intron 1 of 22)	4101	NM_005418	6764		NM_005418	ENSG00000166444	DENND2B	HTS1|ST5|p126	DENN domain containing 2B	protein-coding
176711	chr4	101187871	101188150	+	0	NA	intron (NM_001130692, intron 2 of 11)	intron (NM_001130692, intron 2 of 11)	52862	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
35032	chr11	567801	570000	+	0	NA	promoter-TSS (NR_029623)	promoter-TSS (NR_029623)	-443	NR_038262	100506211		NR_038262	ENSG00000247095	MIR210HG	-	MIR210 host gene	ncRNA
125016	chr2	9558551	9558650	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2770	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
78583	chr15	93033401	93033800	+	0	NA	Intergenic	MIR|SINE|MIR	39556	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
180617	chr5	16612001	16612400	+	0	NA	intron (NM_001034850, intron 1 of 8)	L1ME2|LINE|L1	-3726	NR_109946	101929524		NR_109946	ENSG00000246214	RETREG1-AS1	-	RETREG1 antisense RNA 1	ncRNA
15084	chr1	148514301	148514930	+	0	NA	Intergenic	Intergenic	-31313	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
166420	chr3	113736561	113737450	+	0	NA	intron (NM_025146, intron 1 of 4)	MIR3|SINE|MIR	9244	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
84839	chr16	31120651	31120950	+	0	NA	intron (NM_032188, intron 3 of 10)	intron (NM_032188, intron 3 of 10)	3136	NM_032188	84148		NM_032188	ENSG00000103510	KAT8	LIGOWS|MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
150948	chr21	44299211	44301600	+	0	NA	intron (NM_002626, intron 1 of 21)	CpG	352	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
197079	chr6	56570771	56570950	+	0	NA	intron (NM_015548, intron 34 of 83)	intron (NM_015548, intron 34 of 83)	72029	NM_001723	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
205280	chr7	8418771	8418930	+	0	NA	Intergenic	Intergenic	-14759	NM_152745	30010		NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
56349	chr12	113056451	113058280	+	0	NA	intron (NM_004416, intron 1 of 9)	CpG	635	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
145407	chr20	41631951	41632250	+	0	NA	Intergenic	Intergenic	-13723	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
71295	chr14	105295421	105295680	+	0	NA	intron (NM_001242787, intron 1 of 17)	AluJb|SINE|Alu	-5224	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
212893	chr7	130885151	130885450	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-7761	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
31543	chr10	96941051	96941580	+	0	NA	intron (NM_032440, intron 4 of 7)	SVA_E|Retroposon|SVA	108370	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
88209	chr16	81822951	81823650	+	0	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	44009	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
64744	chr14	34549851	34550380	+	0	NA	Intergenic	Intergenic	3401	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
71260	chr14	105206221	105206880	+	0	NA	Intergenic	Intergenic	-25227	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
142809	chr20	16226921	16227180	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-241168	NR_130924	613266		NR_130924	ENSG00000286546	LOC613266	-	uncharacterized LOC613266	ncRNA
224922	chr9	32588051	32588350	+	0	NA	Intergenic	Intergenic	-15016	NM_001199987	4712		NM_002493	ENSG00000165264	NDUFB6	B17|CI	NADH:ubiquinone oxidoreductase subunit B6	protein-coding
82607	chr16	18902121	18902380	+	0	NA	intron (NM_015092, intron 1 of 62)	MER77B|LTR|ERVL	24158	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
94018	chr17	26938801	26939000	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	150341	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
219383	chr8	70401671	70403200	+	0	NA	intron (NM_001321703, intron 1 of 22)	CpG	955	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
186290	chr5	134553951	134555300	+	0	NA	intron (NM_001289985, intron 4 of 11)	intron (NM_001289985, intron 4 of 11)	28517	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
51038	chr12	49764221	49764530	+	0	NA	3' UTR (NM_003217, exon 10 of 10)	3' UTR (NM_003217, exon 10 of 10)	22566	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
115500	chr19	15408621	15408880	+	0	NA	intron (NM_014371, intron 2 of 13)	AluY|SINE|Alu	10238	NM_014371	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
205001	chr7	6450451	6451150	+	0	NA	Intergenic	AluSx|SINE|Alu	-2788	NM_001142936	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
50736	chr12	48987751	48988950	+	0	NA	Intergenic	Intergenic	-9997	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
154306	chr22	31950671	31950830	+	0	NA	intron (NM_003405, intron 1 of 1)	intron (NM_003405, intron 1 of 1)	-5388	NM_015372	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
205334	chr7	12633521	12633880	+	0	NA	intron (NM_033128, intron 7 of 13)	intron (NM_033128, intron 7 of 13)	44177	NM_033128	85477		NM_033128	ENSG00000006747	SCIN	-	scinderin	protein-coding
206866	chr7	37495421	37496100	+	0	NA	Intergenic	Intergenic	-46434	NM_001206480	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
77842	chr15	88651271	88651630	+	0	NA	5' UTR (NM_001303236, exon 3 of 4)	5' UTR (NM_001303236, exon 3 of 4)	12434	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
58322	chr12	131132321	131132780	+	0	NA	intron (NM_001330497, intron 22 of 25)	MLT1K|LTR|ERVL-MaLR	-32461	NR_026670	116437		NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
30761	chr10	84308651	84309350	+	0	NA	Intergenic	Intergenic	-19589	NM_001284241	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
104568	chr17	81351651	81352280	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-21291	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
192177	chr6	17666701	17666980	+	0	NA	intron (NM_001278209, intron 8 of 22)	intron (NM_001278209, intron 8 of 22)	-39290	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
122270	chr19	49060771	49060930	+	0	NA	TTS (NM_006179)	TTS (NM_006179)	3017	NM_006179	4909		NM_006179	ENSG00000225950	NTF4	GLC10|GLC1O|NT-4|NT-4/5|NT-5|NT4|NT5|NTF5	neurotrophin 4	protein-coding
152585	chr22	21165951	21166050	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-1865	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
234772	chrX	23790101	23790300	+	0	NA	Intergenic	Intergenic	7042	NM_002970	6303		NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
139165	chr2	219179551	219179650	+	0	NA	intron (NM_001321109, intron 2 of 8)	L2c|LINE|L2	891	NM_001321110	79137		NM_024293	ENSG00000144567	RETREG2	C2orf17|FAM134A|MAG-2	reticulophagy regulator family member 2	protein-coding
6256	chr1	27564751	27565300	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	38469	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
124029	chr19	55488921	55489400	+	0	NA	intron (NM_001144950, intron 2 of 13)	intron (NM_001144950, intron 2 of 13)	724	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
176832	chr4	102565121	102565580	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-62864	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
151137	chr21	44899751	44900350	+	0	NA	intron (NM_001127491, intron 7 of 15)	intron (NM_001127491, intron 7 of 15)	20849	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
180789	chr5	32242671	32243430	+	0	NA	intron (NM_001294344, intron 11 of 13)	intron (NM_001294344, intron 11 of 13)	-68731	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
210118	chr7	98131701	98132350	+	0	NA	intron (NM_014916, intron 1 of 13)	L1MC5|LINE|L1	25163	NM_014916	22853		NM_014916	ENSG00000164715	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK	lemur tyrosine kinase 2	protein-coding
90918	chr17	2595851	2596150	+	0	NA	intron (NM_000430, intron 1 of 10)	intron (NM_000430, intron 1 of 10)	2346	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
69636	chr14	97723321	97723800	+	0	NA	Intergenic	Intergenic	-36902	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
122543	chr19	49645771	49646200	+	0	NA	intron (NM_021228, intron 3 of 10)	intron (NM_021228, intron 3 of 10)	3776	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
173460	chr4	8435321	8436400	+	0	NA	intron (NM_001375784, intron 1 of 17)	HERV3-int|LTR|ERV1	4863	NM_003501	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
225856	chr9	38227701	38228230	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-158738	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
161879	chr3	45922271	45922630	+	0	NA	intron (NM_024513, intron 17 of 17)	intron (NM_024513, intron 17 of 17)	-6726	NM_001276379	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
136600	chr2	178452921	178453180	+	0	NA	promoter-TSS (NM_001369912)	promoter-TSS (NM_001369912)	-189	NM_001369912	494513		NM_001042702	ENSG00000204311	PJVK	DFNB59	pejvakin	protein-coding
7850	chr1	36365221	36365480	+	0	NA	intron (NM_001282547, intron 1 of 10)	intron (NM_001282547, intron 1 of 10)	20574	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
148100	chr20	63328101	63328500	+	0	NA	intron (NM_020882, intron 33 of 35)	intron (NM_020882, intron 33 of 35)	-31688	NR_110634	100130587		NR_110634	ENSG00000203900	LOC100130587	-	uncharacterized LOC100130587	ncRNA
140661	chr2	233968451	233968750	+	0	NA	intron (NM_024080, intron 15 of 25)	intron (NM_024080, intron 15 of 25)	51227	NM_024080	79054		NM_024080	ENSG00000144481	TRPM8	LTRPC6|LTrpC-6|TRPP8|trp-p8	transient receptor potential cation channel subfamily M member 8	protein-coding
86584	chr16	67240521	67241780	+	0	NA	intron (NM_001318202, intron 1 of 23)	intron (NM_001318202, intron 1 of 23)	6331	NM_001318202	29109		NM_013241	ENSG00000135723	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
213627	chr7	139625401	139625800	+	0	NA	intron (NM_022740, intron 6 of 14)	intron (NM_022740, intron 6 of 14)	101915	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
45412	chr11	118354301	118354500	+	0	NA	3' UTR (NM_000073, exon 7 of 7)	3' UTR (NM_000073, exon 7 of 7)	-5200	NM_001204077	9354		NM_004788	ENSG00000110344	UBE4A	E4|NEDHMS|UBOX2|UFD2	ubiquitination factor E4A	protein-coding
236106	chrX	56995121	56995850	+	0	NA	promoter-TSS (NM_001010862)	promoter-TSS (NM_001010862)	56	NM_001010862	169981		NM_001010862	ENSG00000204271	SPIN3	SPIN-3|TDRD27|bA445O16.1	spindlin family member 3	protein-coding
105310	chr17	82547101	82547500	+	0	NA	intron (NM_004514, intron 1 of 8)	MER30|DNA|hAT-Charlie	27568	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
104596	chr17	81404971	81405330	+	0	NA	intron (NM_001377448, intron 2 of 27)	AluSz|SINE|Alu	-4372	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
73130	chr15	41329021	41329580	+	0	NA	intron (NM_007280, intron 2 of 4)	intron (NM_007280, intron 2 of 4)	3291	NM_007280	11339		NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
206898	chr7	37815971	37816330	+	0	NA	Intergenic	L1MCa|LINE|L1	-32447	NM_016616	51314		NM_016616	ENSG00000086288	NME8	CILD6|DNAI8|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2	NME/NM23 family member 8	protein-coding
150589	chr21	43287201	43287400	+	0	NA	Intergenic	L1MD2|LINE|L1	44739	NR_103713	100126693		NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
17873	chr1	160006151	160006550	+	0	NA	Intergenic	ORSL|DNA|hAT-Tip100	25640	NM_145167	93183		NM_145167	ENSG00000143315	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis class M	protein-coding
216064	chr8	10352821	10353080	+	0	NA	intron (NM_001199729, intron 6 of 6).2	intron (NM_001199729, intron 6 of 6).2	-121615	NR_120604	101929191		NR_120604	ENSG00000253641	LINC03022	LINCR-0001	long intergenic non-protein coding RNA 3022	ncRNA
22051	chr1	211221151	211221450	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-37977	NR_146434	55758		NM_018254	ENSG00000117625	RCOR3	-	REST corepressor 3	protein-coding
20699	chr1	200625121	200625630	+	0	NA	Intergenic	Intergenic	-4624	NM_014875	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
38628	chr11	46348601	46350130	+	0	NA	intron (NM_001199266, intron 1 of 30)	intron (NM_001199266, intron 1 of 30)	1902	NM_001199268	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
119213	chr19	39452321	39453250	+	0	NA	intron (NM_001111020, intron 2 of 29)	AluSx|SINE|Alu	7137	NM_003169	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
159293	chr3	12983451	12983550	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	3601	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
103058	chr17	77213621	77214080	+	0	NA	intron (NM_001144001, intron 14 of 14)	intron (NM_001144001, intron 14 of 14)	28637	NM_001144001	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
136950	chr2	190343201	190344480	+	0	NA	5' UTR (NM_002194, exon 1 of 6)	5' UTR (NM_002194, exon 1 of 6)	251	NM_001128928	3628		NM_002194	ENSG00000151689	INPP1	-	inositol polyphosphate-1-phosphatase	protein-coding
194140	chr6	31979871	31980330	+	0	NA	intron (NM_004197, intron 4 of 6)	intron (NM_004197, intron 4 of 6)	-1957	NM_001352000	110384692		NM_001352000		LOC110384692	-	complement C4A (Rodgers blood group)-like	protein-coding
124247	chr19	57488851	57489050	+	0	NA	intron (NM_001098496, intron 1 of 2)	intron (NM_001098496, intron 1 of 2)	1200	NM_001098493	79744		NM_024691	ENSG00000105136	ZNF419	ZAPHIR|ZNF419A	zinc finger protein 419	protein-coding
182785	chr5	68435571	68435830	+	0	NA	Intergenic	Intergenic	143123	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
119982	chr19	41906701	41906900	+	0	NA	TTS (NM_001365103)	TTS (NM_001365103)	21649	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
109805	chr19	1157501	1158100	+	0	NA	intron (NM_014963, intron 1 of 31)	CpG	16468	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
89096	chr16	88483671	88483830	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	14832	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
124323	chr19	58150321	58151180	+	0	NA	promoter-TSS (NM_024620)	promoter-TSS (NM_024620)	39	NM_024620	79673		NM_024620	ENSG00000181894	ZNF329	-	zinc finger protein 329	protein-coding
150660	chr21	43425101	43425330	+	0	NA	intron (NM_173354, intron 3 of 13)	intron (NM_173354, intron 3 of 13)	1916	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
158101	chr22	50012771	50012930	+	0	NA	promoter-TSS (NM_001001694)	promoter-TSS (NM_001001694)	-85	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
47969	chr12	6876371	6876730	+	0	NA	intron (NR_135083, intron 3 of 3)	AluSp|SINE|Alu	-3247	NM_032641	84727		NM_032641	ENSG00000111671	SPSB2	GRCC9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding
24174	chr1	235878451	235878550	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	5208	NM_001301365	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
173791	chr4	17617721	17618180	+	0	NA	intron (NM_025205, intron 1 of 3)	intron (NM_025205, intron 1 of 3)	3309	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
185888	chr5	132735351	132736050	+	0	NA	intron (NM_001300791, intron 1 of 18)	L2b|LINE|L2	1846	NM_001300792	11127		NM_007054	ENSG00000131437	KIF3A	FLA10|KLP-20	kinesin family member 3A	protein-coding
237790	chrX	129798601	129799250	+	0	NA	Intergenic	Intergenic	18976	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
109661	chr19	1014651	1015900	+	0	NA	intron (NM_033420, intron 1 of 9)	MER20|DNA|hAT-Charlie	5848	NM_001033026	91304		NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
40376	chr11	63994951	63995250	+	0	NA	intron (NR_003089, intron 3 of 5)	AluJo|SINE|Alu	9247	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
18598	chr1	165629101	165629300	+	0	NA	Intergenic	Intergenic	-2034	NM_004528	4259		NM_004528	ENSG00000143198	MGST3	GST-3|GST-III	microsomal glutathione S-transferase 3	protein-coding
188803	chr5	158075321	158075600	+	0	NA	Intergenic	Intergenic	-216315	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
3171	chr1	13356951	13357050	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-9866	NM_001024661	729528		NM_001024661	ENSG00000204481	PRAMEF14	-	PRAME family member 14	protein-coding
197373	chr6	73476871	73477230	+	0	NA	intron (NM_133645, intron 4 of 12)	AluSx1|SINE|Alu	15313	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
224044	chr9	3505701	3506230	+	0	NA	intron (NM_134428, intron 1 of 17)	L2a|LINE|L2	-16531	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
123695	chr19	55017771	55018450	+	0	NA	intron (NM_001083899, intron 6 of 7).8	intron (NM_001083899, intron 6 of 7).8	20154	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
139504	chr2	224539771	224540250	+	0	NA	intron (NM_001257197, intron 1 of 14)	L1MC1|LINE|L1	29945	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
219089	chr8	65839871	65840330	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	1964	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
12909	chr1	110555301	110556100	+	0	NA	Intergenic	CpG	-36525	NM_005549	3744		NM_005549	ENSG00000143105	KCNA10	Kcn1|Kv1.8	potassium voltage-gated channel subfamily A member 10	protein-coding
5814	chr1	26602201	26602770	+	0	NA	Intergenic	Intergenic	47943	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
10614	chr1	67760251	67760550	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	-71888	NR_040077	100289178		NR_040077	ENSG00000232284	GNG12-AS1	-	GNG12, DIRAS3 and WLS antisense RNA 1	ncRNA
235233	chrX	41381651	41381750	+	0	NA	Intergenic	Intergenic	47534	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
147962	chr20	62973421	62973800	+	0	NA	Intergenic	Intergenic	20901	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
140805	chr2	236353001	236353380	+	0	NA	intron (NM_001270585, intron 15 of 18)	intron (NM_001270585, intron 15 of 18)	-88845	NM_212556	401036		NM_212556	ENSG00000182177	ASB18	ASB-18	ankyrin repeat and SOCS box containing 18	protein-coding
46281	chr11	124846401	124846600	+	0	NA	Intergenic	Intergenic	-18932	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
183128	chr5	74863671	74864080	+	0	NA	intron (NM_015566, intron 1 of 12)	intron (NM_015566, intron 1 of 12)	-2018	NR_134288	441086		NR_134288		FAM169A-AS1	TP53LC02	FAM169A antisense RNA 1	ncRNA
116267	chr19	17681421	17682280	+	0	NA	intron (NM_001080421, intron 1 of 41)	intron (NM_001080421, intron 1 of 41)	6349	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
10775	chr1	77313421	77313780	+	0	NA	intron (NM_174858, intron 5 of 13)	MER102c|DNA|hAT-Charlie	30513	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
237461	chrX	119755971	119756530	+	0	NA	Intergenic	Intergenic	-2338	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
193405	chr6	30439051	30439350	+	0	NA	Intergenic	Intergenic	-50309	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
151269	chr21	45435451	45435750	+	0	NA	intron (NM_001379500, intron 2 of 41)	intron (NM_001379500, intron 2 of 41)	-10530	NR_027498	378832		NM_199175	ENSG00000183535	COL18A1-AS1	C21orf123|NCRNA00175|PRED80	COL18A1 antisense RNA 1	ncRNA
127644	chr2	43144671	43145030	+	0	NA	Intergenic	Intergenic	-42405	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
181039	chr5	35904651	35905050	+	0	NA	intron (NM_144647, intron 4 of 4)	intron (NM_144647, intron 4 of 4)	33772	NM_001042625	133690		NM_144647	ENSG00000152611	CAPSL	-	calcyphosine like	protein-coding
14547	chr1	144879501	144880080	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	161619	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
96112	chr17	39636871	39638600	+	0	NA	intron (NM_001165938, intron 1 of 13)	intron (NM_001165938, intron 1 of 13)	591	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
7380	chr1	32884421	32885330	+	0	NA	Intergenic	Intergenic	-1616	NM_002143	3208		NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
114487	chr19	12754171	12754880	+	0	NA	intron (NM_017682, intron 3 of 9)	intron (NM_017682, intron 3 of 9)	2734	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
208925	chr7	74066701	74066930	+	0	NA	intron (NM_001278918, intron 27 of 27)	intron (NM_001278918, intron 27 of 27)	-16989	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
58092	chr12	124646301	124647050	+	0	NA	Intergenic	Intergenic	-79063	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
230416	chr9	128123601	128124250	+	0	NA	intron (NM_025072, intron 3 of 6)	intron (NM_025072, intron 3 of 6)	3804	NM_025072	80142		NM_025072	ENSG00000148334	PTGES2	C9orf15|GBF-1|GBF1|PGES2|mPGES-2	prostaglandin E synthase 2	protein-coding
209235	chr7	75757051	75757230	+	0	NA	Intergenic	Intergenic	15071	NM_001371938	10344		NM_006072	ENSG00000006606	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	C-C motif chemokine ligand 26	protein-coding
85709	chr16	56609371	56609900	+	0	NA	TTS (NM_005953)	TTS (NM_005953)	1051	NM_005953	4502		NM_005953	ENSG00000125148	MT2A	MT-2|MT-II|MT2	metallothionein 2A	protein-coding
81701	chr16	11242071	11242230	+	0	NA	Intergenic	Intergenic	14032	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
232590	chr9	136406971	136407130	+	0	NA	intron (NM_001039707, intron 5 of 9)	intron (NM_001039707, intron 5 of 9)	-3523	NM_001282944	23203		NM_015160	ENSG00000165688	PMPCA	Alpha-MPP|CLA1|CPD3|INPP5E|MAS2|P-55|SCAR2	peptidase, mitochondrial processing subunit alpha	protein-coding
59517	chr13	27132601	27133200	+	0	NA	intron (NR_046547, intron 1 of 2)	HAL1ME|LINE|L1	7367	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
166952	chr3	125311851	125311950	+	0	NA	intron (NM_001348424, intron 5 of 9)	L1MC|LINE|L1	45380	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
10255	chr1	64245521	64245780	+	0	NA	non-coding (NR_158768, exon 10 of 10)	non-coding (NR_158768, exon 10 of 10)	42027	NM_001366235	148581		NM_152489	ENSG00000177414	UBE2U	-	ubiquitin conjugating enzyme E2 U	protein-coding
121675	chr19	47504751	47505280	+	0	NA	intron (NR_038456, intron 1 of 11)	intron (NR_038456, intron 1 of 11)	10048	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
117941	chr19	33186501	33186700	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-7730	NM_002333	4037		NM_002333	ENSG00000130881	LRP3	-	LDL receptor related protein 3	protein-coding
128478	chr2	58022701	58022900	+	0	NA	intron (NM_001288837, intron 1 of 15)	AluSz6|SINE|Alu	-23842	NM_001130480	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
52175	chr12	54299951	54300050	+	0	NA	intron (NM_001136023, intron 1 of 2)	intron (NM_001136023, intron 1 of 2)	1015	NM_001136023	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
224450	chr9	15427801	15428200	+	0	NA	intron (NR_161434, intron 2 of 8)	AluSz|SINE|Alu	5124	NR_161450	6619		NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
75963	chr15	70486301	70487150	+	0	NA	Intergenic	Intergenic	19203	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
22826	chr1	225342951	225343250	+	0	NA	intron (NM_001367479, intron 69 of 85)	intron (NM_001367479, intron 69 of 85)	84938	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
48424	chr12	9679771	9680430	+	0	NA	intron (NM_001197317, intron 1 of 3)	THE1C|LTR|ERVL-MaLR	10387	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
166602	chr3	119240121	119241100	+	0	NA	intron (NM_212543, intron 1 of 8)	CpG	268	NM_003778	8702		NM_003778	ENSG00000121578	B4GALT4	B4Gal-T4|beta4Gal-T4	beta-1,4-galactosyltransferase 4	protein-coding
72684	chr15	38554121	38555130	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	10189	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
135803	chr2	169849571	169849930	+	0	NA	intron (NM_172070, intron 1 of 38)	LTR36|LTR|ERV1	22296	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
61477	chr13	52408251	52408430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2168	NM_018676	55901		NM_018676	ENSG00000136114	THSD1	ANIB12|LMPHM13|TMTSP|UNQ3010	thrombospondin type 1 domain containing 1	protein-coding
153248	chr22	24037901	24038700	+	0	NA	intron (NM_012295, intron 3 of 36)	intron (NM_012295, intron 3 of 36)	26930	NM_001199281	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
19210	chr1	172449251	172449350	+	0	NA	intron (NM_139240, intron 3 of 6)	intron (NM_139240, intron 3 of 6)	-3593	NM_001300760	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
26116	chr10	13440051	13440800	+	0	NA	TTS (NM_001100912)	TTS (NM_001100912)	63168	NM_001100912	222389		NM_152751	ENSG00000165626	BEND7	C10orf30	BEN domain containing 7	protein-coding
38446	chr11	45316851	45316950	+	0	NA	Intergenic	AluY|SINE|Alu	-30559	NM_020826	57586		NM_020826	ENSG00000019505	SYT13	-	synaptotagmin 13	protein-coding
126153	chr2	26235151	26235400	+	0	NA	intron (NM_000182, intron 4 of 19)	AluSx|SINE|Alu	9357	NM_000182	3030		NM_000182	ENSG00000084754	HADHA	ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha	protein-coding
171771	chr4	53121	54330	+	0	NA	intron (NM_001286053, intron 1 of 1)	CpG	404	NM_182524	152687		NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding
138888	chr2	217756471	217756850	+	0	NA	promoter-TSS (NR_026597)	promoter-TSS (NR_026597)	-67	NR_026597	729582		NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
144580	chr20	35780021	35781030	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	8510	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
13898	chr1	119711651	119712100	+	0	NA	promoter-TSS (NM_006623)	promoter-TSS (NM_006623)	-59	NM_006623	26227		NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA	phosphoglycerate dehydrogenase	protein-coding
217191	chr8	26321871	26322030	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	28734	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
54240	chr12	82358071	82359630	+	0	NA	promoter-TSS (NR_033192)	promoter-TSS (NR_033192)	-45	NR_033192	29080		NM_014167	ENSG00000133773	CCDC59	BR22|HSPC128|TAP26	coiled-coil domain containing 59	protein-coding
110642	chr19	2231651	2232430	+	0	NA	3' UTR (NM_032482, exon 28 of 28)	3' UTR (NM_032482, exon 28 of 28)	2109	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
67859	chr14	74239571	74240100	+	0	NA	exon (NM_182894, exon 1 of 5)	exon (NM_182894, exon 1 of 5)	386	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
127743	chr2	43579321	43579580	+	0	NA	intron (NR_144316, intron 8 of 36)	intron (NR_144316, intron 8 of 36)	16524	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
202403	chr6	157869751	157870050	+	0	NA	intron (NM_016224, intron 2 of 17)	intron (NM_016224, intron 2 of 17)	46654	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
13191	chr1	112621751	112623380	+	0	NA	intron (NM_006135, intron 1 of 9)	intron (NM_006135, intron 1 of 9)	2733	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
147616	chr20	62135521	62135930	+	0	NA	TTS (NM_144703)	TTS (NM_144703)	7669	NM_002792	5688		NM_002792	ENSG00000101182	PSMA7	C6|HEL-S-276|HSPC|RC6-1|XAPC7	proteasome 20S subunit alpha 7	protein-coding
131818	chr2	98623621	98624030	+	0	NA	3' UTR (NM_012214, exon 16 of 16)	3' UTR (NM_012214, exon 16 of 16)	15236	NM_001330353	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
92822	chr17	16038671	16038830	+	0	NA	intron (NM_001190440, intron 43 of 44)	intron (NM_001190440, intron 43 of 44)	38926	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
187585	chr5	142825271	142825630	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	43460	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
144669	chr20	36237271	36237430	+	0	NA	intron (NM_015511, intron 1 of 3)	L2b|LINE|L2	872	NM_001271874	25980		NM_015511	ENSG00000131043	AAR2	C20orf4|CGI-23	AAR2 splicing factor	protein-coding
197046	chr6	53363001	53363830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14236	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
71486	chr14	105984171	105984530	+	0	NA	Intergenic	Intergenic	-12081	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
92993	chr17	17174471	17174630	+	0	NA	intron (NM_015134, intron 18 of 22)	intron (NM_015134, intron 18 of 22)	31783	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
163899	chr3	52523471	52523830	+	0	NA	TTS (NM_001134231)	TTS (NM_001134231)	10207	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
154581	chr22	36271551	36271650	+	0	NA	Intergenic	L1P3|LINE|L1	15307	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
45635	chr11	118943351	118943700	+	0	NA	Intergenic	L2b|LINE|L2	-12773	NM_006760	7379		NM_006760	ENSG00000110375	UPK2	UP2|UPII	uroplakin 2	protein-coding
120021	chr19	41944901	41946230	+	0	NA	Intergenic	Intergenic	13756	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
157785	chr22	46764401	46764950	+	0	NA	intron (NR_104292, intron 1 of 13)	MLT1C|LTR|ERVL-MaLR	933	NR_104292	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
663	chr1	1364721	1365030	+	0	NA	Intergenic	AluSx|SINE|Alu	-1334	NM_001282582	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
73883	chr15	50422871	50423030	+	0	NA	Intergenic	AluSz|SINE|Alu	-1455	NM_001283049	9101		NM_005154	ENSG00000138592	USP8	HumORF8|PITA4|SPG59|UBPY	ubiquitin specific peptidase 8	protein-coding
116139	chr19	17347971	17348130	+	0	NA	Intergenic	L2c|LINE|L2	10497	NM_001128855	84705		NM_032620	ENSG00000130299	GTPBP3	COXPD23|GTPBG3|MSS1|MTGP1|THDF1	GTP binding protein 3, mitochondrial	protein-coding
46806	chr11	130309051	130309550	+	0	NA	intron (NR_163264, intron 1 of 10)	MER83|LTR|ERV1	5412	NM_001301099	29068		NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
76507	chr15	74956101	74957400	+	0	NA	promoter-TSS (NM_017793)	promoter-TSS (NM_017793)	22	NM_017793	54913		NM_017793	ENSG00000178718	RPP25	-	ribonuclease P and MRP subunit p25	protein-coding
237338	chrX	118525221	118525480	+	0	NA	intron (NM_144658, intron 1 of 52)	L1MB4|LINE|L1	29441	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
42061	chr11	67478901	67479300	+	0	NA	Intergenic	AluSq|SINE|Alu	-3926	NM_003977	9049		NM_003977	ENSG00000110711	AIP	ARA9|FKBP16|FKBP37|PITA1|SMTPHN|XAP-2|XAP2	aryl hydrocarbon receptor interacting protein	protein-coding
11532	chr1	90997021	90997280	+	0	NA	intron (NM_032186, intron 1 of 3)	L1M4|LINE|L1	24358	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
165984	chr3	108085771	108086330	+	0	NA	intron (NM_198793, intron 1 of 8)	L2c|LINE|L2	4981	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
229427	chr9	121356301	121357330	+	0	NA	intron (NM_001270526, intron 1 of 6)	AluSz|SINE|Alu	13435	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
184781	chr5	110753671	110754250	+	0	NA	intron (NM_001303249, intron 5 of 7)	intron (NM_001303249, intron 5 of 7)	14953	NM_138773	91137		NM_138773	ENSG00000164209	SLC25A46	HMSN6B|PCH1E	solute carrier family 25 member 46	protein-coding
174544	chr4	40203401	40203700	+	0	NA	intron (NM_001278362, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	6519	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
12136	chr1	100072771	100072930	+	0	NA	intron (NM_033055, intron 8 of 11)	intron (NM_033055, intron 8 of 11)	34755	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
105163	chr17	82262451	82262550	+	0	NA	intron (NM_139062, intron 2 of 9)	intron (NM_139062, intron 2 of 9)	11200	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
34459	chr10	132441651	132442280	+	0	NA	Intergenic	Intergenic	-3224	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
227629	chr9	92850971	92851200	+	0	NA	intron (NM_031486, intron 4 of 4)	intron (NM_031486, intron 4 of 4)	26883	NM_001354536	83744		NM_031486	ENSG00000127081	ZNF484	BA526D8.4	zinc finger protein 484	protein-coding
172324	chr4	1681651	1682250	+	0	NA	intron (NM_001174070, intron 1 of 4)	MIRb|SINE|MIR	2041	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
195278	chr6	36493871	36494430	+	0	NA	3' UTR (NM_001305102, exon 14 of 14)	3' UTR (NM_001305102, exon 14 of 14)	51150	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
27959	chr10	42177071	42177700	+	0	NA	Intergenic	CpG	190660	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
136422	chr2	176269201	176270030	+	0	NA	5' UTR (NM_001319098, exon 1 of 9)	5' UTR (NM_001319098, exon 1 of 9)	173	NM_001319097	10651		NM_006554	ENSG00000128654	MTX2	MDPS|metaxin-2	metaxin 2	protein-coding
147134	chr20	54221501	54221850	+	0	NA	Intergenic	Intergenic	13588	NM_002623	5203		NM_002623	ENSG00000101132	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
68310	chr14	77320701	77322450	+	0	NA	promoter-TSS (NM_013382)	promoter-TSS (NM_013382)	539	NM_145870	2954		NM_001513	ENSG00000100577	GSTZ1	GSTZ1-1|MAAI|MAAID|MAI	glutathione S-transferase zeta 1	protein-coding
29546	chr10	71284951	71285450	+	0	NA	intron (NM_170744, intron 3 of 16)	intron (NM_170744, intron 3 of 16)	-34053	NR_033413	55315		NM_018344	ENSG00000198246	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 member 3	protein-coding
119495	chr19	40465001	40467430	+	0	NA	promoter-TSS (NM_000713)	promoter-TSS (NM_000713)	-470	NM_000713	645		NM_000713	ENSG00000090013	BLVRB	BVRB|FLR|HEL-S-10|SDR43U1	biliverdin reductase B	protein-coding
159415	chr3	13495371	13495530	+	0	NA	intron (NM_001330636, intron 3 of 6)	intron (NM_001330636, intron 3 of 6)	15144	NM_001136041	79885		NM_024827	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
17001	chr1	156007921	156008180	+	0	NA	TTS (NM_003145)	TTS (NM_003145)	12901	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
62926	chr13	111178801	111179000	+	0	NA	intron (NM_001354057, intron 3 of 18)	intron (NM_001354057, intron 3 of 18)	-7894	NM_001113513	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
73721	chr15	45165371	45165950	+	0	NA	TTS (NM_017434)	TTS (NM_017434)	15547	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
39687	chr11	61730301	61730700	+	0	NA	intron (NM_006133, intron 8 of 19)	intron (NM_006133, intron 8 of 19)	-22136	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
49619	chr12	27969021	27969400	+	0	NA	intron (NM_198965, intron 4 of 5)	intron (NM_198965, intron 4 of 5)	766	NM_198964	5744		NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
181333	chr5	40396151	40396450	+	0	NA	Intergenic	Intergenic	-283615	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
99054	chr17	48911901	48912280	+	0	NA	intron (NM_023079, intron 2 of 6)	intron (NM_023079, intron 2 of 6)	-3107	NR_135674	105371814		NR_135674	ENSG00000293025	LOC105371814	-	uncharacterized LOC105371814	ncRNA
8182	chr1	39563301	39563700	+	0	NA	intron (NM_003819, intron 12 of 15)	L2c|LINE|L2	-1570	NR_125979	101929516		NR_125979		PABPC4-AS1	-	PABPC4 antisense RNA 1	ncRNA
56147	chr12	111327471	111327630	+	0	NA	intron (NM_015267, intron 18 of 21)	L1MB7|LINE|L1	23408	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
189322	chr5	172152151	172152450	+	0	NA	intron (NM_005990, intron 2 of 18)	MER63B|DNA|hAT-Blackjack	35924	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
168758	chr3	151207671	151208050	+	0	NA	intron (NM_053002, intron 14 of 42)	intron (NM_053002, intron 14 of 42)	-4644	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
55314	chr12	103905801	103906000	+	0	NA	intron (NR_027249, intron 4 of 15)	GA-rich|Low_complexity|Low_complexity	24311	NR_027249	253724		NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
216408	chr8	18213371	18213700	+	0	NA	intron (NM_001160171, intron 2 of 3)	MER57E1|LTR|ERV1	3426	NM_001160175	9		NM_000662	ENSG00000171428	NAT1	AAC1|MNAT|NAT-1|NATI	N-acetyltransferase 1	protein-coding
33170	chr10	112955921	112956180	+	0	NA	intron (NM_001198530, intron 3 of 10)	intron (NM_001198530, intron 3 of 10)	5800	NM_001363501	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
159688	chr3	15536801	15537300	+	0	NA	Intergenic	Intergenic	-15344	NM_080539	8292		NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
99542	chr17	50364371	50364850	+	0	NA	Intergenic	Intergenic	8574	NM_016504	51264		NM_016504	ENSG00000108826	MRPL27	L27mt|bL27m	mitochondrial ribosomal protein L27	protein-coding
89326	chr16	88738901	88739180	+	0	NA	non-coding (NR_103774, exon 3 of 3)	non-coding (NR_103774, exon 3 of 3)	-3727	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
161846	chr3	45696851	45697600	+	0	NA	intron (NM_001319073, intron 2 of 20)	AluJr|SINE|Alu	7829	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
72810	chr15	40100101	40100600	+	0	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	5736	NM_001003942	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
836	chr1	1586221	1586500	+	0	NA	Intergenic	MER52C|LTR|ERV1	-11497	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
115159	chr19	14415851	14416300	+	0	NA	intron (NR_046366, intron 1 of 9)	AluSx1|SINE|Alu	3266	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
12602	chr1	109044171	109045450	+	0	NA	Intergenic	Intergenic	-2582	NM_014969	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
36948	chr11	11022401	11022700	+	0	NA	Intergenic	MamRep564|Unknown|Unknown	164333	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
183737	chr5	81233101	81233300	+	0	NA	promoter-TSS (NM_001825)	promoter-TSS (NM_001825)	-120	NM_001099736	1160		NM_001825	ENSG00000131730	CKMT2	SMTCK	creatine kinase, mitochondrial 2	protein-coding
184257	chr5	96706821	96707080	+	0	NA	intron (NM_173060, intron 1 of 28)	intron (NM_173060, intron 1 of 28)	4290	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
27725	chr10	34638321	34638680	+	0	NA	intron (NM_019619, intron 2 of 24)	intron (NM_019619, intron 2 of 24)	176796	NM_001184794	56288		NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
37579	chr11	19244571	19244730	+	0	NA	Intergenic	Intergenic	-2995	NM_001256372	79733		NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
145744	chr20	45095051	45095150	+	0	NA	exon (NM_001322799, exon 4 of 4)	exon (NM_001322799, exon 4 of 4)	6027	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
237523	chrX	120269401	120269800	+	0	NA	intron (NM_001104545, intron 5 of 6)	intron (NM_001104545, intron 5 of 6)	18788	NM_006777	10009		NM_006777	ENSG00000177485	ZBTB33	ZNF-kaiso|ZNF348	zinc finger and BTB domain containing 33	protein-coding
139985	chr2	230921751	230922330	+	0	NA	intron (NM_005683, intron 1 of 1)	L3|LINE|CR1	3202	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
204124	chr7	2312351	2312980	+	0	NA	intron (NM_013321, intron 1 of 10)	intron (NM_013321, intron 1 of 10)	1776	NM_013321	29886		NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
217571	chr8	29460401	29460600	+	0	NA	Intergenic	AluSx|SINE|Alu	-109816	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
107070	chr18	33820171	33820330	+	0	NA	Intergenic	LTR12D|LTR|ERV1	228362	NM_001198549	8715		NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
67817	chr14	73788971	73789480	+	0	NA	intron (NR_109995, intron 2 of 2)	MLT1F2|LTR|ERVL-MaLR	1865	NR_109995	100506476		NR_109995		MIDEAS-AS1	-	MIDEAS antisense RNA 1	ncRNA
24092	chr1	235369251	235369350	+	0	NA	intron (NM_001079515, intron 1 of 16).2	AluSc|SINE|Alu	1873	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
90996	chr17	2751021	2751280	+	0	NA	Intergenic	Intergenic	-1498	NM_001355573	101928991		NM_001355573	ENSG00000277200	CCDC92B	-	coiled-coil domain containing 92B	protein-coding
207918	chr7	50661501	50662100	+	0	NA	intron (NM_001371008, intron 4 of 15)	intron (NM_001371008, intron 4 of 15)	43501	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
20781	chr1	201025721	201027150	+	0	NA	Intergenic	Intergenic	-2721	NM_001252102	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
182553	chr5	65796851	65797350	+	0	NA	intron (NM_020726, intron 9 of 12)	intron (NM_020726, intron 9 of 12)	74895	NM_020726	57486		NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
125716	chr2	20452451	20452750	+	0	NA	Intergenic	Intergenic	5526	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
176011	chr4	82280701	82280900	+	0	NA	Intergenic	AluJb|SINE|Alu	93191	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
36771	chr11	9399601	9400200	+	0	NA	intron (NM_006391, intron 1 of 24)	intron (NM_006391, intron 1 of 24)	15248	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
229265	chr9	117918031	117918150	+	0	NA	Intergenic	Intergenic	213687	NM_003266	7099		NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll like receptor 4	protein-coding
141426	chr2	240992901	240993550	+	0	NA	TTS (NM_001351305)	TTS (NM_001351305)	-5393	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
156223	chr22	40342971	40343780	+	0	NA	Intergenic	Intergenic	-3125	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
67034	chr14	67618121	67618980	+	0	NA	Intergenic	AluJo|SINE|Alu	-1370	NM_001172	384		NM_001172	ENSG00000081181	ARG2	-	arginase 2	protein-coding
191008	chr6	3074771	3074930	+	0	NA	intron (NM_001317061, intron 2 of 12)	AluSg|SINE|Alu	6356	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
156347	chr22	40820701	40821300	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1601	NM_001282726	10478		NM_006358	ENSG00000100372	SLC25A17	PMP34	solute carrier family 25 member 17	protein-coding
47662	chr12	6324901	6325800	+	0	NA	intron (NR_169277, intron 14 of 16)	MIRc|SINE|MIR	12217	NM_001144857	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
194688	chr6	33686271	33687030	+	0	NA	intron (NM_002224, intron 43 of 57)	intron (NM_002224, intron 43 of 57)	-11478	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
7336	chr1	32725171	32725600	+	0	NA	Intergenic	Intergenic	-16445	NM_020888	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
203291	chr6	169921211	169921500	+	0	NA	Intergenic	Intergenic	-41268	NR_027434	100131532		NR_027434		LOC100131532	-	uncharacterized LOC100131532	ncRNA
218276	chr8	42274501	42275100	+	0	NA	intron (NM_001242778, intron 2 of 20)	AluSq2|SINE|Alu	3498	NM_001242778	3551		NM_001556	ENSG00000104365	IKBKB	IKK-2|IKK-beta|IKK2|IKKB|IMD15|IMD15A|IMD15B|NFKBIKB	inhibitor of nuclear factor kappa B kinase subunit beta	protein-coding
95815	chr17	38745821	38746580	+	0	NA	intron (NM_001369614, intron 1 of 9)	intron (NM_001369614, intron 1 of 9)	428	NM_001369615	7703		NM_007144	ENSG00000277258	PCGF2	MEL-18|RNF110|TPFS|ZNF144	polycomb group ring finger 2	protein-coding
76120	chr15	72518301	72518800	+	0	NA	intron (NM_005744, intron 2 of 13)	AluSc|SINE|Alu	44220	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
181528	chr5	43061551	43062180	+	0	NA	intron (NR_104651, intron 2 of 2)	intron (NR_104651, intron 2 of 2)	5106	NR_034127	100132356		NM_175919		LOC100132356	-	uncharacterized LOC100132356	ncRNA
195013	chr6	35449251	35450430	+	0	NA	Intergenic	Intergenic	-2498	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
132676	chr2	108782671	108782830	+	0	NA	exon (NM_006267, exon 28 of 29)	exon (NM_006267, exon 28 of 29)	-4000	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
20992	chr1	202709301	202709700	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	954	NM_177402	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
57946	chr12	123713501	123713700	+	0	NA	intron (NM_012463, intron 1 of 19)	L2a|LINE|L2	1247	NM_012463	23545		NM_012463	ENSG00000185344	ATP6V0A2	A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS|a2V	ATPase H+ transporting V0 subunit a2	protein-coding
209828	chr7	88243321	88243580	+	0	NA	Intergenic	Intergenic	-16457	NM_198901	6717		NM_003130	ENSG00000075142	SRI	CP-22|CP22|SCN|V19	sorcin	protein-coding
194415	chr6	33072021	33072280	+	0	NA	intron (NM_001242525, intron 2 of 5).8	L2|LINE|L2	1527	NM_033554	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
20823	chr1	201399271	201399630	+	0	NA	promoter-TSS (NM_005558)	promoter-TSS (NM_005558)	-126	NM_005558	3898		NM_005558	ENSG00000159166	LAD1	LadA	ladinin 1	protein-coding
87694	chr16	74695401	74696400	+	0	NA	intron (NM_001142497, intron 1 of 5)	MLT1J2|LTR|ERVL-MaLR	4962	NM_001142497	197259		NM_152649	ENSG00000168404	MLKL	hMLKL	mixed lineage kinase domain like pseudokinase	protein-coding
232170	chr9	134170421	134171280	+	0	NA	Intergenic	Intergenic	-6286	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
94096	chr17	27651171	27651900	+	0	NA	Intergenic	Intergenic	20347	NM_009587	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
145643	chr20	44891121	44891400	+	0	NA	intron (NM_003404, intron 2 of 6)	AluSx1|SINE|Alu	5555	NM_003404	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
59559	chr13	27359001	27359500	+	0	NA	Intergenic	Intergenic	-65369	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
28240	chr10	45495871	45496050	+	0	NA	intron (NM_001282866, intron 2 of 7)	L1M4b|LINE|L1	39411	NM_001282866	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
18516	chr1	161772401	161772690	+	0	NA	intron (NM_007348, intron 1 of 15)	L2|LINE|L2	6225	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
151728	chr22	17768951	17769050	+	0	NA	intron (NM_001244567, intron 1 of 5)	AluYh3|SINE|Alu	-4741	NR_036168	100423025		NR_036168	ENSG00000264757	MIR3198-1	MIR3198|mir-3198-1	microRNA 3198-1	ncRNA
113431	chr19	9795471	9796780	+	0	NA	Intergenic	MER66C|LTR|ERV1	-2945	NR_148545	100505555		NR_148545	ENSG00000196605	LOC100505555	-	uncharacterized LOC100505555	ncRNA
234147	chrX	10106621	10107280	+	0	NA	intron (NM_015691, intron 8 of 22)	intron (NM_015691, intron 8 of 22)	-49995	NM_001256944	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
221419	chr8	123727771	123728130	+	0	NA	intron (NM_004306, intron 1 of 10)	intron (NM_004306, intron 1 of 10)	9443	NM_004306	312		NM_004306	ENSG00000104537	ANXA13	ANX13|ISA	annexin A13	protein-coding
104149	chr17	80388771	80388930	+	0	NA	intron (NM_001256071, intron 64 of 67)	intron (NM_001256071, intron 64 of 67)	-26317	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
15148	chr1	148901171	148901330	+	0	NA	intron (NM_001195260, intron 2 of 4)	intron (NM_001195260, intron 2 of 4)	11690	NM_001002810	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
152654	chr22	21566301	21566580	+	0	NA	intron (NM_001256355, intron 1 of 3)	AluJo|SINE|Alu	-1107	NM_001256356	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
3009	chr1	12067171	12067330	+	0	NA	intron (NM_001281430, intron 1 of 13)	intron (NM_001281430, intron 1 of 13)	3873	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
192742	chr6	26384751	26385200	+	0	NA	intron (NM_001197239, intron 2 of 5)	intron (NM_001197239, intron 2 of 5)	1867	NM_001197238	10385		NM_006995	ENSG00000124508	BTN2A2	BT2.2|BTF2|BTN2.2	butyrophilin subfamily 2 member A2	protein-coding
60892	chr13	46150571	46151000	+	0	NA	intron (NM_002298, intron 8 of 15)	intron (NM_002298, intron 8 of 15)	31392	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
39030	chr11	47761421	47761730	+	0	NA	intron (NM_015308, intron 2 of 16)	AluSg4|SINE|Alu	5766	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
6425	chr1	28115151	28115650	+	0	NA	Intergenic	L1M4|LINE|L1	-26763	NM_001282562	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
79463	chr16	733151	733250	+	0	NA	intron (NM_022493, intron 7 of 10)	intron (NM_022493, intron 7 of 10)	6094	NM_032304	84264		NM_032304	ENSG00000103253	HAGHL	-	hydroxyacylglutathione hydrolase like	protein-coding
60923	chr13	46205721	46206380	+	0	NA	Intergenic	Intergenic	-5878	NM_001282460	220416		NM_001024609	ENSG00000173988	LRRC63	-	leucine rich repeat containing 63	protein-coding
165932	chr3	107512651	107512750	+	0	NA	Intergenic	AluSz6|SINE|Alu	-10262	NM_020235	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
11849	chr1	92968271	92968730	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-6978	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
15841	chr1	151350701	151350900	+	0	NA	Intergenic	MIR|SINE|MIR	-3548	NM_001025603	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
5559	chr1	25902551	25902650	+	0	NA	intron (NM_203399, intron 3 of 4)	intron (NM_203399, intron 3 of 4)	3553	NM_203401	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
228489	chr9	100067471	100067630	+	0	NA	intron (NM_015051, intron 1 of 11)	SVA_D|Retroposon|SVA	31450	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
189220	chr5	171479621	171479880	+	0	NA	Intergenic	Intergenic	60103	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
126206	chr2	26784601	26784900	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1265	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
188930	chr5	160460771	160460930	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-7401	NR_132748	107075116		NR_132748	ENSG00000253522	MIR3142HG	-	MIR3142 host gene	ncRNA
195319	chr6	36603451	36603900	+	0	NA	non-coding (NR_036610, exon 7 of 7)	non-coding (NR_036610, exon 7 of 7)	9313	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
104092	chr17	80263171	80264000	+	0	NA	5' UTR (NM_001256071, exon 2 of 68)	5' UTR (NM_001256071, exon 2 of 68)	2733	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
152904	chr22	22749471	22750030	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-73026	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
40548	chr11	64319621	64320080	+	0	NA	exon (NM_012094, exon 2 of 6)	exon (NM_012094, exon 2 of 6)	-1254	NM_001372071	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
49657	chr12	29026071	29026430	+	0	NA	Intergenic	L2a|LINE|L2	-123028	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
171893	chr4	791401	791630	+	0	NA	intron (NM_006651, intron 3 of 3)	intron (NM_006651, intron 3 of 3)	-9667	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
147182	chr20	56483951	56484250	+	0	NA	intron (NM_016407, intron 4 of 8)	intron (NM_016407, intron 4 of 8)	15473	NM_016407	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
199581	chr6	119073571	119073930	+	0	NA	intron (NM_001288576, intron 1 of 15)	LTR78|LTR|ERV1	-4607	NR_030315	693128		NR_030315	ENSG00000207982	MIR548B	MIRN548B	microRNA 548b	ncRNA
214775	chr7	151096001	151096430	+	0	NA	intron (NM_001350103, intron 1 of 18)	intron (NM_001350103, intron 1 of 18)	9740	NM_001350103	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
44489	chr11	105080671	105081030	+	0	NA	Intergenic	Intergenic	-9320	NR_131905	440067		NR_131905		CASP1P2	-	caspase 1 pseudogene 2	pseudo
148559	chr20	64257601	64258000	+	0	NA	intron (NM_018257, intron 1 of 5)	MIRb|SINE|MIR	2052	NM_018257	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
34417	chr10	132403671	132404000	+	0	NA	intron (NM_138499, intron 1 of 2)	intron (NM_138499, intron 1 of 2)	6635	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
167808	chr3	133578621	133579630	+	0	NA	intron (NM_001282764, intron 2 of 4)	intron (NM_001282764, intron 2 of 4)	4691	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
16790	chr1	155540001	155541080	+	0	NA	intron (NM_018489, intron 1 of 27)	AluJo|SINE|Alu	-21502	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
99839	chr17	55347801	55348000	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	73935	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
10133	chr1	59697071	59697500	+	0	NA	intron (NM_001244714, intron 12 of 13)	L1MB3|LINE|L1	36011	NR_039861	100616409		NR_039861	ENSG00000266150	MIR4711	-	microRNA 4711	ncRNA
238879	chrX	154544371	154544730	+	0	NA	intron (NM_001099856, intron 1 of 9)	AluSx|SINE|Alu	2296	NM_001360016	2539		NM_000402	ENSG00000160211	G6PD	G6PD1	glucose-6-phosphate dehydrogenase	protein-coding
3499	chr1	16037851	16038350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5682	NM_000085	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
125133	chr2	9842901	9844430	+	0	NA	intron (NM_005680, intron 1 of 14)	CpG	191	NM_005680	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
108877	chr18	79393051	79394500	+	0	NA	Intergenic	Intergenic	-2155	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
68411	chr14	81147451	81147550	+	0	NA	Intergenic	Intergenic	55334	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
111376	chr19	3708571	3708730	+	0	NA	intron (NM_001267560, intron 1 of 20)	intron (NM_001267560, intron 1 of 20)	266	NM_001267560	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
152753	chr22	21739651	21739980	+	0	NA	Intergenic	L2|LINE|L2	-4021	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
27917	chr10	41901121	41901580	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	466695	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
46366	chr11	126209871	126210030	+	0	NA	intron (NM_032795, intron 2 of 6)	MER5A1|DNA|hAT-Charlie	1700	NM_032795	84881		NM_032795	ENSG00000165526	RPUSD4	-	RNA pseudouridine synthase D4	protein-coding
74227	chr15	56496601	56496930	+	0	NA	Intergenic	Intergenic	-31628	NM_018365	55329		NM_018365	ENSG00000138587	MNS1	HTX9|SPATA40	meiosis specific nuclear structural 1	protein-coding
2749	chr1	10678271	10678650	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	118186	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
169761	chr3	172580601	172581130	+	0	NA	intron (NR_146714, intron 2 of 3)	intron (NR_146714, intron 2 of 3)	14742	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
64023	chr14	22511001	22511350	+	0	NA	Intergenic	Intergenic	-28216	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
197797	chr6	87691301	87691780	+	0	NA	intron (NM_018064, intron 1 of 4)	L2|LINE|L2	10693	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
153537	chr22	26579271	26580230	+	0	NA	intron (NM_001362923, intron 1 of 7)	intron (NM_001362923, intron 1 of 7)	10382	NM_003595	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
16765	chr1	155376851	155376950	+	0	NA	intron (NM_018489, intron 10 of 27)	(AATTCAT)n|Simple_repeat|Simple_repeat	-30455	NR_030282	693140		NR_030282	ENSG00000283701	MIR555	MIRN555|hsa-mir-555	microRNA 555	ncRNA
169490	chr3	169766421	169767030	+	0	NA	TTS (NM_032487)	TTS (NM_032487)	-1665	NR_001566	7012		NR_001566	ENSG00000277925	TERC	DKCA1|PFBMFT2|SCARNA19|TER|TR|TRC3|hTR	telomerase RNA component	ncRNA
89018	chr16	88192721	88193280	+	0	NA	Intergenic	Intergenic	-1281	NR_110944	101928880		NR_110944	ENSG00000260420	LINC02182	LA16c-444G7.2	long intergenic non-protein coding RNA 2182	ncRNA
175780	chr4	77792501	77794530	+	0	NA	intron (NM_001365006, intron 1 of 11)	MIR|SINE|MIR	25549	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
119162	chr19	39396371	39396530	+	0	NA	intron (NM_001317770, intron 3 of 3)	AluSx4|SINE|Alu	5072	NM_001317770	55588		NM_017592	ENSG00000063322	MED29	IXL|MED2	mediator complex subunit 29	protein-coding
45533	chr11	118750401	118750600	+	0	NA	3' UTR (NM_001257191, exon 14 of 14)	3' UTR (NM_001257191, exon 14 of 14)	40448	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
204999	chr7	6447151	6448590	+	0	NA	promoter-TSS (NM_139179)	promoter-TSS (NM_139179)	84	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
134997	chr2	152730371	152731100	+	0	NA	intron (NM_001371972, intron 2 of 3)	MamGypLTR1c|LTR|Gypsy	11786	NM_001350068	151188		NM_152522	ENSG00000177917	ARL6IP6	AIP-6|AIP6|PFAAP1	ADP ribosylation factor like GTPase 6 interacting protein 6	protein-coding
26198	chr10	14552801	14553780	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	2890	NM_001320738	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
51705	chr12	53191771	53191930	+	0	NA	3' UTR (NM_001004304, exon 7 of 7)	3' UTR (NM_001004304, exon 7 of 7)	-10925	NM_001244705	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
226836	chr9	77841921	77842200	+	0	NA	intron (NM_002072, intron 2 of 6)	intron (NM_002072, intron 2 of 6)	189751	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
225364	chr9	34760421	34760780	+	0	NA	Intergenic	Intergenic	-31112	NM_001141917	259308		NM_001141917	ENSG00000205108	SPATA31F1	C9orf144B|FAM205A	SPATA31 subfamily F member 1	protein-coding
157553	chr22	45670251	45670550	+	0	NA	Intergenic	Intergenic	-1398	NM_001167621	25814		NM_013236	ENSG00000130638	ATXN10	ATX10|E46L|HUMEEP|SCA10	ataxin 10	protein-coding
202647	chr6	158769151	158769630	+	0	NA	exon (NM_001111077, exon 12 of 14)	exon (NM_001111077, exon 12 of 14)	-4637	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
13816	chr1	117615071	117616250	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	9612	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
129709	chr2	70822901	70823300	+	0	NA	Intergenic	Intergenic	-2501	NM_173535	165530		NM_173535	ENSG00000152672	CLEC4F	CLECSF13|KCLR|KCR	C-type lectin domain family 4 member F	protein-coding
14666	chr1	145813021	145814180	+	0	NA	intron (NM_014455, intron 1 of 8)	intron (NM_014455, intron 1 of 8)	10495	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
132649	chr2	108729521	108729850	+	0	NA	intron (NM_006267, intron 2 of 28)	intron (NM_006267, intron 2 of 28)	10203	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
124538	chr2	289351	289450	+	0	NA	Intergenic	CpG-15643	-1309	NM_001002919	285016		NM_001002919	ENSG00000189292	ALKAL2	AUGA|FAM150B|PRO1097|RGPG542	ALK and LTK ligand 2	protein-coding
211324	chr7	104209771	104210330	+	0	NA	Intergenic	L1PA3|LINE|L1	-2003	NM_181747	5001		NM_002553	ENSG00000164815	ORC5	ORC5L|ORC5P|ORC5T|PPP1R117	origin recognition complex subunit 5	protein-coding
186392	chr5	135053451	135053550	+	0	NA	intron (NR_161235, intron 2 of 5)	intron (NR_161235, intron 2 of 5)	-13453	NR_105050	101927953		NR_105049	ENSG00000249082	EPIST	C5orf66-AS1	esophagus epithelial intergenic associated transcript	ncRNA
179869	chr5	589551	589850	+	0	NA	Intergenic	Intergenic	22510	NR_103444	100996325		NR_103444		CEP72-DT	-	CEP72 divergent transcript	ncRNA
226511	chr9	71819201	71819850	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-51012	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
200991	chr6	139529971	139530130	+	0	NA	Intergenic	AluY|SINE|Alu	-55454	NR_033919	645434		NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA
84054	chr16	29580951	29581250	+	0	NA	intron (NR_135305, intron 1 of 13)	intron (NR_135305, intron 1 of 13)	13992	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
97656	chr17	44206051	44206150	+	0	NA	non-coding (NR_045058, exon 21 of 21)	non-coding (NR_045058, exon 21 of 21)	1739	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
69102	chr14	92352571	92352730	+	0	NA	intron (NM_153647, intron 3 of 17)	intron (NM_153647, intron 3 of 17)	29485	NM_153647	123041		NM_153646	ENSG00000140090	SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 member 4	protein-coding
194293	chr6	32690121	32690500	+	0	NA	Intergenic	Intergenic	-23653	NM_002123	3119		NM_002123	ENSG00000179344	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
82878	chr16	21545271	21546030	+	0	NA	Intergenic	Intergenic	-25206	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
218249	chr8	42151851	42153740	+	0	NA	promoter-TSS (NM_001134296)	promoter-TSS (NM_001134296)	-151	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
122372	chr19	49362751	49365100	+	0	NA	promoter-TSS (NM_001197301)	promoter-TSS (NM_001197301)	48	NM_001197302	27120		NM_014419	ENSG00000104901	DKKL1	CT34|SGY|SGY-1|SGY1	dickkopf like acrosomal protein 1	protein-coding
108371	chr18	68716051	68716150	+	0	NA	promoter-TSS (NM_001350513)	promoter-TSS (NM_001350513)	884	NM_001093729	79839		NM_024781	ENSG00000150636	CCDC102B	ACY1L|AN|C18orf14|HsT1731	coiled-coil domain containing 102B	protein-coding
52733	chr12	56627051	56627780	+	0	NA	intron (NM_013449, intron 1 of 28)	AluSg|SINE|Alu	2911	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
159140	chr3	12653751	12654050	+	0	NA	intron (NM_001354691, intron 1 of 16)	Tigger2|DNA|TcMar-Tigger	9608	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
191464	chr6	10954521	10954780	+	0	NA	promoter-TSS (NR_125851)	promoter-TSS (NR_125851)	-561	NR_125851	101928191		NR_125851		LOC101928191	-	uncharacterized LOC101928191	ncRNA
106702	chr18	23422801	23423600	+	0	NA	intron (NR_148384, intron 1 of 12)	L2b|LINE|L2	14761	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
149141	chr21	17788271	17788430	+	0	NA	TTS (NM_001100420)	TTS (NM_001100420)	4159	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
153316	chr22	24246571	24246930	+	0	NA	Intergenic	Intergenic	-1608	NM_001099782	2687		NM_004121	ENSG00000099998	GGT5	GGL|GGT 5|GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
113396	chr19	9309121	9310830	+	0	NA	promoter-TSS (NM_198535)	promoter-TSS (NM_198535)	-137	NM_198535	374879		NM_198535	ENSG00000196110	ZNF699	DEGCAGS|hang	zinc finger protein 699	protein-coding
135930	chr2	171892451	171892750	+	0	NA	intron (NR_047549, intron 2 of 16)	intron (NR_047549, intron 2 of 16)	1644	NM_003705	8604		NM_003705	ENSG00000115840	SLC25A12	AGC1|ARALAR|DEE39|EIEE39	solute carrier family 25 member 12	protein-coding
217820	chr8	37239551	37239850	+	0	NA	Intergenic	Intergenic	254213	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
26405	chr10	17026651	17027780	+	0	NA	intron (NM_001081, intron 27 of 66)	L1M5|LINE|L1	102596	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
68150	chr14	75559951	75560330	+	0	NA	Intergenic	Intergenic	-18480	NM_017791	55640		NM_017791	ENSG00000119686	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2	FLVCR choline and putative heme transporter 2	protein-coding
116425	chr19	18013371	18013900	+	0	NA	3' UTR (NM_015683, exon 8 of 8)	3' UTR (NM_015683, exon 8 of 8)	5465	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
26891	chr10	26430601	26431430	+	0	NA	Intergenic	Intergenic	-7326	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
94326	chr17	28784251	28784750	+	0	NA	intron (NM_001288636, intron 3 of 5)	AluJr|SINE|Alu	27971	NM_001288634	55731		NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding
76731	chr15	76235151	76235480	+	0	NA	intron (NM_001127716, intron 8 of 10)	MER91B|DNA|hAT-Tip100	24837	NR_028510	7302		NR_002721		TYRO3P	-	TYRO3P protein tyrosine kinase pseudogene	pseudo
82171	chr16	14923321	14923950	+	0	NA	intron (NR_146231, intron 11 of 38)	intron (NR_146231, intron 11 of 38)	-2302	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
192597	chr6	25995401	25995700	+	0	NA	Intergenic	L1ME1|LINE|L1	22237	NM_005325	3024		NM_005325	ENSG00000124610	H1-1	H1.1|H1A|H1F1|HIST1|HIST1H1A	H1.1 linker histone, cluster member	protein-coding
84542	chr16	30552921	30553600	+	0	NA	TTS (NM_033410)	TTS (NM_033410)	5114	NM_033410	92595		NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
49912	chr12	39615071	39615230	+	0	NA	intron (NM_005164, intron 2 of 9)	intron (NM_005164, intron 2 of 9)	4653	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
75002	chr15	63970501	63970700	+	0	NA	intron (NR_169522, intron 3 of 11)	L2b|LINE|L2	42326	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
173873	chr4	24544851	24545150	+	0	NA	intron (NM_001358, intron 6 of 13)	AluJb|SINE|Alu	-24710	NR_030299	693158		NR_030299	ENSG00000207697	MIR573	MIRN573|hsa-mir-573|mir-573	microRNA 573	ncRNA
25740	chr10	9082251	9082750	+	0	NA	Intergenic	Intergenic	184511	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
6477	chr1	28346201	28346400	+	0	NA	Intergenic	Intergenic	17260	NM_017638	54797		NM_017638	ENSG00000130772	MED18	SRB5|p28b	mediator complex subunit 18	protein-coding
4279	chr1	19690051	19690150	+	0	NA	intron (NM_001349112, intron 14 of 14)	LTR28B|LTR|ERV1	25225	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
174926	chr4	49117521	49117930	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	131083	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
77768	chr15	85793701	85795350	+	0	NA	intron (NM_022480, intron 1 of 2)	CpG	400	NM_022480	64410		NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch like family member 25	protein-coding
80954	chr16	3864571	3864880	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	15395	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
205382	chr7	14511451	14511550	+	0	NA	intron (NM_001350707, intron 20 of 25)	Tigger1|DNA|TcMar-Tigger	329950	NM_145695	1607		NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
197542	chr6	79048621	79049050	+	0	NA	intron (NM_017934, intron 6 of 39)	intron (NM_017934, intron 6 of 39)	29419	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
139492	chr2	224525551	224526050	+	0	NA	intron (NM_003590, intron 3 of 15)	intron (NM_003590, intron 3 of 15)	44155	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
192411	chr6	24854721	24854980	+	0	NA	intron (NM_001286447, intron 8 of 13)	AluSq|SINE|Alu	22420	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
27652	chr10	33006751	33007050	+	0	NA	Intergenic	Intergenic	-48670	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
119078	chr19	39198901	39199100	+	0	NA	intron (NM_001001414, intron 3 of 5)	MIRb|SINE|MIR	2036	NM_001001414	342897		NM_001001414	ENSG00000188505	NCCRP1	FBXO50|NCCRP-1	NCCRP1, F-box associated domain containing	protein-coding
77539	chr15	84736231	84737150	+	0	NA	Intergenic	AluSx|SINE|Alu	-11902	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
100141	chr17	58514351	58515250	+	0	NA	promoter-TSS (NM_001378067)	promoter-TSS (NM_001378067)	-162	NM_001378067	9110		NM_004687	ENSG00000108389	MTMR4	FYVE-DSP2|ZFYVE11	myotubularin related protein 4	protein-coding
207692	chr7	45767771	45769930	+	0	NA	non-coding (NR_024271, exon 1 of 13)	non-coding (NR_024271, exon 1 of 13)	168	NR_024271	641977		NR_024271	ENSG00000291207	SEPTIN7P2	SEPT13|SEPT7B|SEPT7P2	septin 7 pseudogene 2	pseudo
165505	chr3	100260501	100261650	+	0	NA	promoter-TSS (NM_018309)	promoter-TSS (NM_018309)	83	NM_001199198	55773		NM_018309	ENSG00000036054	TBC1D23	NS4ATP1|PCH11	TBC1 domain family member 23	protein-coding
176884	chr4	102760071	102761610	+	0	NA	exon (NM_005908, exon 1 of 17)	exon (NM_005908, exon 1 of 17)	128	NM_005908	4126		NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
219910	chr8	86124971	86125330	+	0	NA	intron (NM_152565, intron 2 of 7)	intron (NM_152565, intron 2 of 7)	26240	NM_152565	245972		NM_152565	ENSG00000147614	ATP6V0D2	ATP6D2|VMA6	ATPase H+ transporting V0 subunit d2	protein-coding
236253	chrX	65752271	65752630	+	0	NA	Intergenic	MER83B-int|LTR|ERV1	84796	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
111043	chr19	3097171	3097930	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	3188	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
226497	chr9	71767901	71770000	+	0	NA	promoter-TSS (NM_001349784)	promoter-TSS (NM_001349784)	-437	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
24322	chr1	237562271	237562630	+	0	NA	intron (NM_001035, intron 27 of 104)	intron (NM_001035, intron 27 of 104)	91331	NR_039626	100616141		NR_039626	ENSG00000266262	MIR4428	-	microRNA 4428	ncRNA
160486	chr3	30614301	30614530	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	7814	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
55154	chr12	98894901	98895100	+	0	NA	promoter-TSS (NM_001352213)	promoter-TSS (NM_001352213)	-104	NM_001352213	56899		NM_020140	ENSG00000185046	ANKS1B	AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
30142	chr10	74101371	74101530	+	0	NA	intron (NM_014000, intron 14 of 21)	AluJo|SINE|Alu	49378	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
66782	chr14	64673451	64674250	+	0	NA	Intergenic	Intergenic	-30574	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
78685	chr15	95868601	95869100	+	0	NA	Intergenic	Intergenic	258991	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
128095	chr2	47903121	47903480	+	0	NA	intron (NM_001190274, intron 1 of 22)	intron (NM_001190274, intron 1 of 22)	2038	NM_001374325	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
156841	chr22	41955471	41955830	+	0	NA	intron (NR_024355, intron 1 of 1)	AluY|SINE|Alu	3463	NR_024355								
42425	chr11	69101251	69101950	+	0	NA	Intergenic	Intergenic	18424	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
177638	chr4	121215271	121215430	+	0	NA	intron (NM_001128843, intron 2 of 12)	intron (NM_001128843, intron 2 of 12)	1277	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
42373	chr11	68816671	68817680	+	0	NA	intron (NM_001031847, intron 1 of 18)	(GT)n|Simple_repeat|Simple_repeat	24741	NM_001876	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
64393	chr14	24162451	24163800	+	0	NA	exon (NM_006084, exon 3 of 9).2	exon (NM_006084, exon 3 of 9).2	1860	NM_001385400	10379		NM_006084	ENSG00000213928	IRF9	IRF-9|ISGF3|ISGF3G|p48	interferon regulatory factor 9	protein-coding
36251	chr11	3769171	3769330	+	0	NA	intron (NM_001365128, intron 7 of 32)	AluJr|SINE|Alu	28296	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
222973	chr8	143206311	143208030	+	0	NA	Intergenic	Intergenic	-6048	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
129631	chr2	70131501	70131960	+	0	NA	Intergenic	Intergenic	-6414	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
58174	chr12	124986071	124986580	+	0	NA	intron (NM_032656, intron 1 of 26)	intron (NM_032656, intron 1 of 26)	2806	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
187904	chr5	148836851	148837200	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	10414	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
96352	chr17	40071701	40072600	+	0	NA	intron (NM_199334, intron 1 of 8)	intron (NM_199334, intron 1 of 8)	9185	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
31645	chr10	97396951	97397930	+	0	NA	intron (NM_015179, intron 2 of 33)	AluSz|SINE|Alu	3900	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
231758	chr9	132232301	132232500	+	0	NA	intron (NM_032536, intron 5 of 7)	intron (NM_032536, intron 5 of 7)	70342	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
81537	chr16	9104021	9104580	+	0	NA	intron (NM_014117, intron 3 of 3)	AluSp|SINE|Alu	12656	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
111349	chr19	3667151	3667450	+	0	NA	intron (NM_001300849, intron 2 of 16)	MIR3|SINE|MIR	33168	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
201271	chr6	144215371	144217230	+	0	NA	Intergenic	CpG	65783	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
232624	chr9	136446721	136446980	+	0	NA	intron (NM_014866, intron 28 of 31)	intron (NM_014866, intron 28 of 31)	-7005	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
238846	chrX	154470701	154471350	+	0	NA	intron (NM_017514, intron 30 of 32)	intron (NM_017514, intron 30 of 32)	8232	NM_006014	8270		NM_006014	ENSG00000196976	LAGE3	CVG5|DXS9879E|DXS9951E|ESO3|GAMOS2|ITBA2|Pcc1	L antigen family member 3	protein-coding
146375	chr20	49277201	49279300	+	0	NA	promoter-TSS (NR_002433)	promoter-TSS (NR_002433)	72	NR_036658	441951		NR_003604	ENSG00000177410	ZFAS1	C20orf199|HSUP1|HSUP2|NCRNA00275|ZNFX1-AS1	ZNFX1 antisense RNA 1	ncRNA
119934	chr19	41844601	41844900	+	0	NA	promoter-TSS (NM_001040283)	promoter-TSS (NM_001040283)	-67	NM_173506	147719		NM_173506	ENSG00000273111	LYPD4	SMR	LY6/PLAUR domain containing 4	protein-coding
29667	chr10	72034071	72034230	+	0	NA	Intergenic	Intergenic	54401	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
146840	chr20	51419171	51419630	+	0	NA	intron (NM_012340, intron 9 of 10)	MLT1J|LTR|ERVL-MaLR	33577	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
187654	chr5	143094351	143094680	+	0	NA	intron (NR_146198, intron 17 of 22)	LTR10F|LTR|ERV1	-97985	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
118224	chr19	35179751	35180480	+	0	NA	Intergenic	Intergenic	25380	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
65170	chr14	49594751	49595250	+	0	NA	intron (NM_001351375, intron 1 of 2)	MER65D|LTR|ERV1	-3697	NR_037793	122769		NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
3032	chr1	12140701	12140900	+	0	NA	intron (NM_001281430, intron 13 of 13)	intron (NM_001281430, intron 13 of 13)	-26143	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
2414	chr1	9584621	9584880	+	0	NA	3' UTR (NM_032315, exon 7 of 7)	3' UTR (NM_032315, exon 7 of 7)	-4161	NM_001010866	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
8723	chr1	42577821	42578280	+	0	NA	intron (NM_001355227, intron 11 of 18)	intron (NM_001355227, intron 11 of 18)	45030	NM_001080850	728621		NM_001080850	ENSG00000186409	CCDC30	PFD6L|PFDN6L	coiled-coil domain containing 30	protein-coding
105212	chr17	82328921	82329380	+	0	NA	intron (NM_003004, intron 1 of 4)	intron (NM_003004, intron 1 of 4)	4616	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
66991	chr14	67186571	67186930	+	0	NA	Intergenic	LTR50|LTR|ERVL	-2690	NM_173526	161142		NM_173526	ENSG00000172717	GARIN2	C14orf54|FAM71D|GARI-L1|GARI-L2	golgi associated RAB2 interactor family member 2	protein-coding
130645	chr2	86140971	86141330	+	0	NA	3' UTR (NM_017952, exon 24 of 24)	3' UTR (NM_017952, exon 24 of 24)	5280	NR_004378	692225		NR_004378	ENSG00000208772	SNORD94	U94	small nucleolar RNA, C/D box 94	snoRNA
29378	chr10	70017621	70017700	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-35186	NM_018649	55506		NM_018649	ENSG00000099284	MACROH2A2	H2AFY2	macroH2A.2 histone	protein-coding
72458	chr15	32364721	32365580	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	-22473	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
26356	chr10	15831051	15832250	+	0	NA	intron (NM_001318330, intron 7 of 13)	intron (NM_001318330, intron 7 of 13)	28857	NM_024948	80013		NM_024948	ENSG00000148481	MINDY3	C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042	MINDY lysine 48 deubiquitinase 3	protein-coding
206354	chr7	30471251	30471550	+	0	NA	intron (NM_001354849, intron 1 of 12)	intron (NM_001354849, intron 1 of 12)	7384	NM_006092	10392		NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1|hNod1	nucleotide binding oligomerization domain containing 1	protein-coding
108908	chr18	79431171	79431530	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	31051	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
10880	chr1	78114201	78115030	+	0	NA	intron (NM_017655, intron 3 of 5)	intron (NM_017655, intron 3 of 5)	68649	NM_017655	54810		NM_017655	ENSG00000137960	GIPC2	SEMCAP-2|SEMCAP2	GIPC PDZ domain containing family member 2	protein-coding
105983	chr18	5868351	5868450	+	0	NA	Intergenic	Intergenic	27554	NM_001080209	645369		NM_001080209	ENSG00000206432	TMEM200C	TTMA	transmembrane protein 200C	protein-coding
167977	chr3	136722521	136722780	+	0	NA	intron (NM_005862, intron 1 of 33)	(CTCTCC)n|Simple_repeat|Simple_repeat	29728	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
91764	chr17	6857321	6857580	+	0	NA	intron (NR_002710, intron 2 of 13)	L1PA15|LINE|L1	3874	NR_002710	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
218027	chr8	38759351	38759650	+	0	NA	intron (NM_001352804, intron 1 of 10)	intron (NM_001352804, intron 1 of 10)	2225	NM_001352790	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
165164	chr3	72338471	72338630	+	0	NA	Intergenic	Intergenic	108073	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
187753	chr5	144169801	144171330	+	0	NA	promoter-TSS (NM_001271732)	promoter-TSS (NM_001271732)	94	NM_001024947	81555		NM_030799	ENSG00000145817	YIPF5	FinGER5|MEDS2|SB140|SMAP-5|SMAP5|YIP1A|YIPFalpha1A	Yip1 domain family member 5	protein-coding
199306	chr6	112042771	112044350	+	0	NA	Intergenic	Intergenic	-10544	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
212771	chr7	129955451	129955750	+	0	NA	Intergenic	L2c|LINE|L2	-2640	NM_001202498	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
11413	chr1	89708471	89708830	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	75530	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
79070	chr16	162321	163100	+	0	NA	Intergenic	Intergenic	-3268	NM_001003938	3042		NM_001003938	ENSG00000206177	HBM	HBAP2|HBK	hemoglobin subunit mu	protein-coding
175852	chr4	78940801	78941030	+	0	NA	Intergenic	MER39|LTR|ERV1	-1477	NM_001350106	152559		NM_177453	ENSG00000163291	PAQR3	RKTG	progestin and adipoQ receptor family member 3	protein-coding
113368	chr19	8751771	8752450	+	0	NA	Intergenic	Intergenic	21156	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
108658	chr18	76764521	76764780	+	0	NA	Intergenic	Intergenic	57645	NR_040024	100131655		NR_040024	ENSG00000264278	ZNF236-DT	-	ZNF236 divergent transcript	ncRNA
232723	chr9	136610601	136610800	+	0	NA	Intergenic	Intergenic	6481	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
104176	chr17	80420771	80420930	+	0	NA	intron (NR_148042, intron 2 of 7)	AluSp|SINE|Alu	1432	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
101455	chr17	67452601	67453850	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-18264	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
186143	chr5	134163471	134163830	+	0	NA	intron (NM_170679, intron 3 of 5)	AluJb|SINE|Alu	13300	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
235914	chrX	53080621	53081300	+	0	NA	TTS (NM_018969)	TTS (NM_018969)	-1407	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
179735	chr5	219301	219800	+	0	NA	intron (NM_001330758, intron 1 of 12)	intron (NM_001330758, intron 1 of 12)	1230	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
204670	chr7	5486371	5487450	+	0	NA	intron (NM_024963, intron 4 of 4)	CpG	9007	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
49151	chr12	14947351	14948200	+	0	NA	intron (NR_135637, intron 2 of 3)	intron (NR_135637, intron 2 of 3)	1121	NR_135637	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
181951	chr5	55027521	55028530	+	0	NA	intron (NM_002104, intron 2 of 4)	intron (NM_002104, intron 2 of 4)	3769	NM_002104	3003		NM_002104	ENSG00000113088	GZMK	TRYP2	granzyme K	protein-coding
75194	chr15	64802021	64802300	+	0	NA	Intergenic	Intergenic	23487	NM_001286496	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
21564	chr1	206395721	206395980	+	0	NA	intron (NM_001377446, intron 7 of 21)	intron (NM_001377446, intron 7 of 21)	-74626	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
89634	chr16	89326971	89327130	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	6598	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
209472	chr7	76515701	76516150	+	0	NA	3' UTR (NM_001347684, exon 6 of 6)	3' UTR (NM_001347684, exon 6 of 6)	5373	NM_001347684	105375355		NM_030570	ENSG00000243566	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
66586	chr14	63509201	63509400	+	0	NA	intron (NM_006246, intron 2 of 13)	AluSz6|SINE|Alu	-1062	NM_001282182	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
184081	chr5	93591721	93591980	+	0	NA	intron (NM_005654, intron 2 of 2)	intron (NM_005654, intron 2 of 2)	8628	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
69094	chr14	92123971	92124330	+	0	NA	intron (NM_001322272, intron 1 of 15)	L2b|LINE|L2	2181	NM_017437	53981		NM_017437	ENSG00000165934	CPSF2	CPSF100	cleavage and polyadenylation specific factor 2	protein-coding
181601	chr5	43516401	43516730	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1417	NM_198566	375444		NM_198566	ENSG00000172244	C5orf34	-	chromosome 5 open reading frame 34	protein-coding
53263	chr12	63666201	63666750	+	0	NA	intron (NM_173812, intron 1 of 21)	intron (NM_173812, intron 1 of 21)	2018	NM_173812	283417		NM_173812	ENSG00000177990	DPY19L2	SPATA34|SPGF9	dpy-19 like 2	protein-coding
137672	chr2	197456951	197457750	+	0	NA	intron (NM_001320820, intron 1 of 4)	L1MA5A|LINE|L1	3586	NM_001320819	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
70646	chr14	102926721	102926980	+	0	NA	intron (NM_030943, intron 3 of 11)	L1PB|LINE|L1	4187	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
15212	chr1	149391701	149392030	+	0	NA	intron (NM_001364013, intron 1 of 4)	intron (NM_001364013, intron 1 of 4)	1227	NM_001364013	100996717		NM_001364012	ENSG00000286219	NOTCH2NLC	ETM6|N2N|NIID|NOTCH2NL|NOTCH2NLA|OPDM3	notch 2 N-terminal like C	protein-coding
49858	chr12	34236151	34236330	+	0	NA	Intergenic	(ATCACC)n|Simple_repeat|Simple_repeat	213744	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
223417	chr8	143941551	143943300	+	0	NA	exon (NM_201383, exon 1 of 32)	exon (NM_201383, exon 1 of 32)	199	NM_201383	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
76577	chr15	75327071	75327230	+	0	NA	Intergenic	Intergenic	-8913	NM_017828	54939		NM_017828	ENSG00000140365	COMMD4	-	COMM domain containing 4	protein-coding
46876	chr11	133956451	133958130	+	0	NA	promoter-TSS (NM_001277285)	promoter-TSS (NM_001277285)	-322	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
226479	chr9	71752451	71753400	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	15588	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
120721	chr19	45323621	45323900	+	0	NA	promoter-TSS (NM_001824)	promoter-TSS (NM_001824)	-885	NM_001824	1158		NM_001824	ENSG00000104879	CKM	CKMM|CPK-M|M-CK	creatine kinase, M-type	protein-coding
127349	chr2	39126301	39126500	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1532	NM_001382394	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
157085	chr22	42618921	42619800	+	0	NA	3' UTR (NM_007326, exon 9 of 9)	3' UTR (NM_007326, exon 9 of 9)	4115	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
3853	chr1	16939471	16940130	+	0	NA	intron (NM_014675, intron 12 of 36)	(GCCTAG)n|Simple_repeat|Simple_repeat	17869	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
167124	chr3	127680451	127680550	+	0	NA	non-coding (NR_033429, exon 12 of 12)	non-coding (NR_033429, exon 12 of 12)	7548	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
110923	chr19	2780951	2781250	+	0	NA	intron (NM_003021, intron 1 of 11)	intron (NM_003021, intron 1 of 11)	2173	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
209565	chr7	77351351	77352250	+	0	NA	intron (NR_146937, intron 18 of 31)	intron (NR_146937, intron 18 of 31)	-63398	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
183312	chr5	76680201	76680400	+	0	NA	intron (NM_001285462, intron 16 of 23)	L1M4|LINE|L1	-32103	NR_028375	100302746		NR_028375		NCRUPAR	NCRNA00193|ncR-uPAR	non-protein coding RNA, upstream of F2R/PAR1	ncRNA
88759	chr16	86587671	86588030	+	0	NA	Intergenic	Intergenic	9301	NM_005250	2300		NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7|OTSC11	forkhead box L1	protein-coding
92164	chr17	7704871	7706450	+	0	NA	exon (NM_001406, exon 1 of 5)	exon (NM_001406, exon 1 of 5)	458	NM_001406	1949		NM_001406	ENSG00000108947	EFNB3	EFL6|EPLG8|LERK8	ephrin B3	protein-coding
164918	chr3	71153651	71153750	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	-21503	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
33100	chr10	110925021	110925850	+	0	NA	intron (NR_136749, intron 1 of 7)	intron (NR_136749, intron 1 of 7)	5831	NM_007373	8036		NM_007373	ENSG00000108061	SHOC2	NSLH1|SIAA0862|SOC2|SUR8	SHOC2 leucine rich repeat scaffold protein	protein-coding
168058	chr3	136968971	136969450	+	0	NA	intron (NM_144717, intron 1 of 6)	L1HS|LINE|L1	11227	NM_144717	53833		NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
16481	chr1	154716871	154717030	+	0	NA	intron (NM_170782, intron 5 of 7)	intron (NM_170782, intron 5 of 7)	-88953	NM_001365045	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
238391	chrX	150366651	150366750	+	0	NA	intron (NM_001177465, intron 1 of 4)	intron (NM_001177465, intron 1 of 4)	3383	NM_001177465	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
223591	chr8	144294021	144294430	+	0	NA	intron (NM_005526, intron 1 of 12)	intron (NM_005526, intron 1 of 12)	2621	NM_005526	3297		NM_005526	ENSG00000185122	HSF1	HSTF1	heat shock transcription factor 1	protein-coding
236889	chrX	83634921	83635480	+	0	NA	Intergenic	LTR13|LTR|ERVK	126910	NM_000307	5456		NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
144364	chr20	35085471	35086950	+	0	NA	intron (NM_199368, intron 1 of 18)	AluSx|SINE|Alu	6597	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
106887	chr18	24460521	24460780	+	0	NA	promoter-TSS (NM_001143828)	promoter-TSS (NM_001143828)	13	NM_021624	59340		NM_021624	ENSG00000134489	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
170625	chr3	187022421	187023080	+	0	NA	intron (NM_003032, intron 1 of 6)	MER4D|LTR|ERV1	895	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
151539	chr21	46504101	46504700	+	0	NA	exon (NM_015151, exon 6 of 38)	exon (NM_015151, exon 6 of 38)	41929	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
147205	chr20	57377951	57378250	+	0	NA	3' UTR (NM_001015885, exon 12 of 12)	3' UTR (NM_001015885, exon 12 of 12)	-13296	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
181865	chr5	54218051	54218230	+	0	NA	intron (NM_019087, intron 1 of 4)	OldhAT1|DNA|hAT-Ac	92433	NM_019087	54622		NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
33468	chr10	119065021	119065280	+	0	NA	intron (NM_003750, intron 7 of 21)	intron (NM_003750, intron 7 of 21)	-5012	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
130971	chr2	87555101	87555300	+	0	NA	Intergenic	Intergenic	-74555	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
116316	chr19	17796371	17796750	+	0	NA	intron (NM_014256, intron 1 of 2)	intron (NM_014256, intron 1 of 2)	1422	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
156396	chr22	41111571	41112400	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluY|SINE|Alu	19393	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
8345	chr1	40201571	40201730	+	0	NA	intron (NM_012421, intron 4 of 7)	intron (NM_012421, intron 4 of 7)	40263	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
153425	chr22	25051071	25051330	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	23226	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
79825	chr16	1429701	1430400	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-1028	NM_001365310	105371045		NM_001365310	ENSG00000284395	PERCC1	DIAR11|ICR|gs104	proline and glutamate rich with coiled coil 1	protein-coding
23333	chr1	228104801	228105200	+	0	NA	Intergenic	Intergenic	-1675	NM_024319	79169		NM_024319	ENSG00000143793	C1orf35	MMTAG2	chromosome 1 open reading frame 35	protein-coding
22853	chr1	225466271	225466430	+	0	NA	Intergenic	AluSq|SINE|Alu	-37495	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
192579	chr6	25890401	25890650	+	0	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-16282	NM_006632	10786		NM_006632	ENSG00000124564	SLC17A3	GOUT4|NPT4|UAQTL4	solute carrier family 17 member 3	protein-coding
234168	chrX	11756351	11756650	+	0	NA	Intergenic	Intergenic	-1659	NM_001282174	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
17071	chr1	156113051	156113350	+	0	NA	intron (NM_001282625, intron 3 of 12)	AluSx1|SINE|Alu	-1511	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
184200	chr5	95868951	95869850	+	0	NA	Intergenic	AluSx|SINE|Alu	17168	NR_026936	202299		NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
51133	chr12	50111351	50113000	+	0	NA	promoter-TSS (NM_001257134)	promoter-TSS (NM_001257134)	-61	NM_001257133	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
20465	chr1	198606271	198606430	+	0	NA	Intergenic	Intergenic	-32618	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
62953	chr13	112279601	112280100	+	0	NA	Intergenic	Intergenic	-6850	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
172629	chr4	2526551	2526980	+	0	NA	Intergenic	AluSz|SINE|Alu	-8610	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
218138	chr8	41701521	41702180	+	0	NA	intron (NM_020475, intron 21 of 41)	CpG	-36576	NM_020480	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
52105	chr12	54174071	54174230	+	0	NA	Intergenic	Intergenic	14807	NM_001351257	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
130308	chr2	84939301	84940580	+	0	NA	Intergenic	Intergenic	-31221	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
167999	chr3	136758351	136758930	+	0	NA	Intergenic	Intergenic	-6262	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
95540	chr17	36608921	36609180	+	0	NA	TTS (NM_024864)	TTS (NM_024864)	7467	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
227324	chr9	89443801	89444590	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	35695	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
84746	chr16	30955021	30955350	+	0	NA	TTS (NM_152288)	TTS (NM_152288)	-2569	NM_014712	9739		NM_014712	ENSG00000099381	SETD1A	EPEDD|EPEO2|KMT2F|NEDSID|Set1|Set1A	SET domain containing 1A, histone lysine methyltransferase	protein-coding
15724	chr1	151048201	151050050	+	0	NA	intron (NM_017860, intron 1 of 1)	AluSq2|SINE|Alu	1374	NM_017860	54964		NM_017860	ENSG00000143443	C1orf56	MENT	chromosome 1 open reading frame 56	protein-coding
106506	chr18	20971671	20972130	+	0	NA	intron (NM_005406, intron 22 of 32)	L2a|LINE|L2	139913	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
85779	chr16	56940001	56940400	+	0	NA	exon (NM_001010989, exon 6 of 8)	exon (NM_001010989, exon 6 of 8)	8058	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
81771	chr16	11505151	11505750	+	0	NA	intron (NM_001370704, intron 8 of 66)	AluJb|SINE|Alu	21797	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
89353	chr16	88765801	88766900	+	0	NA	intron (NM_001142864, intron 1 of 50)	MLT2D|LTR|ERVL	18870	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
204808	chr7	5663201	5663400	+	0	NA	intron (NR_046834, intron 2 of 2)	AluY|SINE|Alu	17161	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
156368	chr22	41025671	41026230	+	0	NA	Intergenic	AluSx4|SINE|Alu	47771	NR_132979	106635682		NR_132979		SNORD140	-	small nucleolar RNA, C/D box 140	snoRNA
20490	chr1	198643871	198644430	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	5110	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
97899	chr17	45118751	45119050	+	0	NA	exon (NM_133373, exon 5 of 15)	exon (NM_133373, exon 5 of 15)	-4467	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
67618	chr14	72904651	72905380	+	0	NA	Intergenic	Intergenic	-10899	NM_001280543	8110		NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4|SMARCG3	double PHD fingers 3	protein-coding
7387	chr1	32900201	32900400	+	0	NA	intron (NM_001329723, intron 1 of 4)	AluJr|SINE|Alu	1089	NM_001329722	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
190575	chr5	180869021	180869380	+	0	NA	Intergenic	Intergenic	-7924	NM_001172638	643836		NM_152283	ENSG00000196670	ZFP62	ZET|ZNF755	ZFP62 zinc finger protein	protein-coding
2943	chr1	11893921	11894580	+	0	NA	Intergenic	Intergenic	-13904	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
134690	chr2	144485751	144486050	+	0	NA	intron (NM_014795, intron 2 of 9)	AluSx1|SINE|Alu	-33714	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
181739	chr5	50699651	50700230	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	32526	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
150187	chr21	39309121	39309730	+	0	NA	intron (NM_033656, intron 4 of 40)	AluJr|SINE|Alu	4207	NM_033656	54014		NM_018963	ENSG00000185658	BRWD1	C21orf107|CILD51|DCAF19|N143|WDR9|WRD9	bromodomain and WD repeat domain containing 1	protein-coding
221820	chr8	128043651	128043750	+	0	NA	intron (NR_003367, intron 5 of 8)	L1ME3G|LINE|L1	-5452	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
52498	chr12	56029721	56030250	+	0	NA	intron (NM_001351091, intron 6 of 8)	intron (NM_001351091, intron 6 of 8)	-4894	NR_135023	105369781		NR_135023		LOC105369781	-	uncharacterized LOC105369781	ncRNA
234196	chrX	12901421	12901850	+	0	NA	Intergenic	Intergenic	-4985	NM_138636	51311		NM_016610	ENSG00000101916	TLR8	CD288|IMD98|TLR-8|hTLR8	toll like receptor 8	protein-coding
215860	chr8	7424271	7424500	+	0	NA	Intergenic	Intergenic	5775	NM_001081551	414325		NM_001081551	ENSG00000176797	DEFB103A	BD-3|DEFB-3|DEFB103|DEFB3|HBD3|HBP-3|HBP3	defensin beta 103A	protein-coding
113841	chr19	10631551	10632200	+	0	NA	exon (NM_001145056, exon 9 of 22)	exon (NM_001145056, exon 9 of 22)	6322	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
23654	chr1	230978301	230980380	+	0	NA	promoter-TSS (NM_001122835)	promoter-TSS (NM_001122835)	246	NR_144538	64801		NM_022786	ENSG00000173409	ARV1	DEE38|EIEE38	ARV1 homolog, fatty acid homeostasis modulator	protein-coding
196156	chr6	42456351	42456650	+	0	NA	Intergenic	Intergenic	-4276	NM_033502	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
175919	chr4	80202901	80203830	+	0	NA	exon (NM_001099403, exon 4 of 4)	exon (NM_001099403, exon 4 of 4)	5862	NM_001099403	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
162244	chr3	47250551	47250650	+	0	NA	promoter-TSS (NR_145712)	promoter-TSS (NR_145712)	9	NR_145712	109617025		NR_145712		SNORD13J	-	small nucleolar RNA, C/D box 13J	snoRNA
134946	chr2	151638401	151639000	+	0	NA	intron (NM_001164508, intron 63 of 181)	intron (NM_001164508, intron 63 of 181)	95776	NM_001271208	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
210322	chr7	99490621	99491300	+	0	NA	intron (NM_001345968, intron 2 of 2)	intron (NM_001345968, intron 2 of 2)	9321	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
32293	chr10	102134621	102134880	+	0	NA	intron (NM_015062, intron 1 of 13)	intron (NM_015062, intron 1 of 13)	1710	NM_015062	23082		NM_015062	ENSG00000148840	PPRC1	PRC	PPARG related coactivator 1	protein-coding
197746	chr6	87165521	87165780	+	0	NA	intron (NM_015021, intron 1 of 7)	intron (NM_015021, intron 1 of 7)	10085	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
37065	chr11	12362851	12363350	+	0	NA	TTS (NM_032867)	TTS (NM_032867)	-14471	NM_018222	55742		NM_018222	ENSG00000197702	PARVA	CH-ILKBP|MXRA2	parvin alpha	protein-coding
4119	chr1	19321251	19321630	+	0	NA	intron (NR_109848, intron 3 of 9)	AluJr|SINE|Alu	9114	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
50849	chr12	49126171	49126800	+	0	NA	Intergenic	AluY|SINE|Alu	4910	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
81948	chr16	11838921	11839180	+	0	NA	intron (NM_015659, intron 8 of 8)	intron (NM_015659, intron 8 of 8)	-10218	NR_024050	400500		NR_024049	ENSG00000262117	BCAR4	-	breast cancer anti-estrogen resistance 4	ncRNA
127043	chr2	37200421	37201100	+	0	NA	TTS (NM_005760)	TTS (NM_005760)	4264	NR_136316	100505876		NM_001322373	ENSG00000218739	CEBPZOS	CEBPZ-AS1	CEBPZ opposite strand	protein-coding
35345	chr11	1181821	1182080	+	0	NA	intron (NM_001304359, intron 30 of 48).2	intron (NM_001304359, intron 30 of 48).2	23997	NM_001304359	4586		NM_017511	ENSG00000215182	MUC5AC	MUC5|TBM|leB|mucin	mucin 5AC, oligomeric mucus/gel-forming	protein-coding
131291	chr2	96105301	96105500	+	0	NA	Intergenic	Intergenic	11171	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
188637	chr5	157224101	157224450	+	0	NA	intron (NM_005546, intron 6 of 16)	AluSz6|SINE|Alu	-41848	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
190462	chr5	180083271	180083630	+	0	NA	Intergenic	Intergenic	-11691	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
142186	chr20	2899321	2899580	+	0	NA	intron (NM_001385311, intron 1 of 20)	MER74A|LTR|ERVL	25969	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
209104	chr7	74888471	74888630	+	0	NA	intron (NR_040584, intron 1 of 7)	intron (NR_040584, intron 1 of 7)	2062	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
118409	chr19	35754051	35754680	+	0	NA	TTS (NM_144617)	TTS (NM_144617)	2664	NM_144617	126393		NM_144617	ENSG00000004776	HSPB6	HEL55|Hsp20|PPP1R91	heat shock protein family B (small) member 6	protein-coding
171071	chr3	195441071	195441230	+	0	NA	intron (NM_012287, intron 1 of 22)	intron (NM_012287, intron 1 of 22)	1870	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
94113	chr17	28041011	28042100	+	0	NA	Intergenic	Intergenic	-1122	NM_016231	51701		NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding
72545	chr15	34340871	34341230	+	0	NA	TTS (NM_018648)	TTS (NM_018648)	2086	NM_018648	55505		NM_018648	ENSG00000182117	NOP10	CHINE2|DKCB1|NOLA3|NOP10P|PFBMFT9	NOP10 ribonucleoprotein	protein-coding
37090	chr11	13209201	13209600	+	0	NA	Intergenic	Intergenic	-67252	NM_001351804	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
216286	chr8	12546851	12547150	+	0	NA	intron (NR_047662, intron 8 of 8)	intron (NR_047662, intron 8 of 8)	109987	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
61407	chr13	51724951	51725050	+	0	NA	intron (NM_052950, intron 5 of 11)	L1MC5a|LINE|L1	78735	NM_001377932	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
173091	chr4	6271471	6271630	+	0	NA	intron (NM_001145853, intron 1 of 7)	intron (NM_001145853, intron 1 of 7)	1700	NM_006005	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
141315	chr2	240454451	240454930	+	0	NA	intron (NR_161169, intron 1 of 2)	intron (NR_161169, intron 1 of 2)	-1311	NR_029702	406941		NR_029702	ENSG00000207611	MIR149	MIRN149|mir-149	microRNA 149	ncRNA
41554	chr11	66315721	66316700	+	0	NA	exon (NM_020404, exon 1 of 1)	exon (NM_020404, exon 1 of 1)	834	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
104238	chr17	80709651	80709950	+	0	NA	intron (NM_020761, intron 4 of 33)	intron (NM_020761, intron 4 of 33)	95832	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
24104	chr1	235502401	235503000	+	0	NA	intron (NM_001277155, intron 1 of 7)	intron (NM_001277155, intron 1 of 7)	1752	NM_001277155	148789		NM_152490	ENSG00000162885	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
184814	chr5	111249851	111250450	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	25766	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
29161	chr10	68723801	68724130	+	0	NA	intron (NM_018237, intron 2 of 24)	AluSp|SINE|Alu	2726	NR_104262	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
113223	chr19	8474701	8475330	+	0	NA	intron (NM_031203, intron 13 of 16)	intron (NM_031203, intron 13 of 16)	27625	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
79599	chr16	1057421	1057900	+	0	NA	Intergenic	CpG	-15096	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
164692	chr3	67652801	67653000	+	0	NA	intron (NM_001177599, intron 1 of 10)	intron (NM_001177599, intron 1 of 10)	1712	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
192546	chr6	25278651	25279930	+	0	NA	promoter-TSS (NM_017640)	promoter-TSS (NM_017640)	-84	NM_001173977	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
182085	chr5	55991701	55992780	+	0	NA	intron (NR_157112, intron 1 of 17)	intron (NR_157112, intron 1 of 17)	2723	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
23215	chr1	227607221	227607600	+	0	NA	intron (NM_178549, intron 2 of 3)	intron (NM_178549, intron 2 of 3)	43854	NM_001367911	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
133271	chr2	113500501	113500880	+	0	NA	3' UTR (NM_012184, exon 1 of 1)	3' UTR (NM_012184, exon 1 of 1)	1606	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
113347	chr19	8657451	8657950	+	0	NA	intron (NM_001378601, intron 1 of 2)	intron (NM_001378601, intron 1 of 2)	2123	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
180383	chr5	7876521	7877100	+	0	NA	intron (NR_157177, intron 4 of 14)	MIR|SINE|MIR	7662	NR_157174	4552		NM_002454	ENSG00000124275	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
214466	chr7	150359021	150360630	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8271	NM_001362746	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
143862	chr20	32541901	32542350	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	32166	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
217419	chr8	28384201	28384580	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	2070	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
103758	chr17	78970951	78972030	+	0	NA	3' UTR (NM_005567, exon 6 of 6)	3' UTR (NM_005567, exon 6 of 6)	8433	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
18712	chr1	167450501	167451480	+	0	NA	intron (NM_198053, intron 1 of 7)	L1ME3G|LINE|L1	67539	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
206211	chr7	28408921	28410150	+	0	NA	intron (NM_182899, intron 1 of 9)	CpG	-2983	NM_182898	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
219617	chr8	80104851	80105180	+	0	NA	intron (NM_001287144, intron 1 of 5)	AluSz|SINE|Alu	-24184	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
216764	chr8	22487401	22487750	+	0	NA	intron (NM_005605, intron 3 of 13)	AluSx|SINE|Alu	46497	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
17803	chr1	159820821	159821080	+	0	NA	Intergenic	Intergenic	-5923	NM_001330741	56833		NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
29868	chr10	72568051	72568150	+	0	NA	intron (NM_006077, intron 1 of 11)	intron (NM_006077, intron 1 of 11)	-44114	NM_001195519	10367		NM_006077	ENSG00000107745	MICU1	CALC|CBARA1|EFHA3|MPXPS|ara CALC	mitochondrial calcium uptake 1	protein-coding
224643	chr9	20618471	20619400	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	3003	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
148385	chr20	63901121	63902050	+	0	NA	intron (NM_025219, intron 1 of 4)	intron (NM_025219, intron 1 of 4)	6459	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
41042	chr11	65454621	65455800	+	0	NA	promoter-TSS (NR_160548)	promoter-TSS (NR_160548)	-76	NR_160548	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
102190	chr17	75164651	75165230	+	0	NA	TTS (NM_001005849)	TTS (NM_001005849)	-10428	NM_001002033	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
7857	chr1	36374401	36375400	+	0	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	11024	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
194326	chr6	32843521	32845200	+	0	NA	promoter-TSS (NM_148919).4	promoter-TSS (NM_148919).4	274	NR_037173	100507463		NR_037173	ENSG00000204261	PSMB8-AS1	TAP1-AS1|TAPSAR1	PSMB8 antisense RNA 1 (head to head)	ncRNA
202696	chr6	158808101	158808300	+	0	NA	intron (NM_003379, intron 1 of 12)	LTR32|LTR|ERVL	-9779	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
127376	chr2	39435251	39435830	+	0	NA	intron (NM_003618, intron 1 of 33)	L2b|LINE|L2	1745	NM_003618	8491		NM_003618	ENSG00000011566	MAP4K3	GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding
226446	chr9	71695221	71695680	+	0	NA	intron (NM_001135820, intron 19 of 22)	AluSx|SINE|Alu	73063	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
202940	chr6	160685171	160685430	+	0	NA	Intergenic	L1PA3|LINE|L1	-16893	NM_001168338	5340		NM_000301	ENSG00000122194	PLG	HAE4	plasminogen	protein-coding
10705	chr1	75614671	75615080	+	0	NA	intron (NM_001320283, intron 1 of 21)	CpG	1288	NM_001320283	204962		NM_152697	ENSG00000137968	SLC44A5	CTL5	solute carrier family 44 member 5	protein-coding
233455	chr9	137647171	137647830	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	28495	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
36537	chr11	6578301	6578530	+	0	NA	Intergenic	AluJr|SINE|Alu	25201	NM_015324	23378		NM_015324	ENSG00000132275	RRP8	KIAA0409|NML	ribosomal RNA processing 8	protein-coding
86645	chr16	67451521	67452180	+	0	NA	intron (NM_004691, intron 2 of 7)	intron (NM_004691, intron 2 of 7)	20729	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
189118	chr5	170420721	170421030	+	0	NA	intron (NR_109899, intron 2 of 2)	MER33|DNA|hAT-Charlie	31382	NR_109899	101928033		NR_109899	ENSG00000253647	KCNIP1-OT1	CTD-2270F17.1	KCNIP1 overlapping transcript 1	ncRNA
12979	chr1	110900171	110900330	+	0	NA	TTS (NM_001320638)	TTS (NM_001320638)	27102	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
82924	chr16	21819251	21819350	+	0	NA	promoter-TSS (NR_003370).2	promoter-TSS (NR_003370).2	-126	NR_003370	730092		NR_003370		RRN3P1	-	RRN3 pseudogene 1	pseudo
219789	chr8	81176351	81176650	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	-64432	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
73081	chr15	40930521	40931280	+	0	NA	intron (NM_019074, intron 3 of 10)	CpG-8119	1560	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
69324	chr14	93231501	93232400	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	24694	NM_175748	55148		NM_175748	ENSG00000012963	UBR7	C14orf130|LICAS	ubiquitin protein ligase E3 component n-recognin 7	protein-coding
205639	chr7	22694671	22695050	+	0	NA	Intergenic	L1MB2|LINE|L1	-29327	NR_122075	401312		NR_122075	ENSG00000105889	LOC401312	-	uncharacterized LOC401312	ncRNA
135637	chr2	168242301	168242500	+	0	NA	intron (NM_013233, intron 1 of 17)	AluSz|SINE|Alu	5195	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
608	chr1	1306901	1310050	+	0	NA	promoter-TSS (NR_144369)	promoter-TSS (NR_144369)	-105	NM_001346116	126789		NM_153339	ENSG00000169972	PUSL1	-	pseudouridine synthase like 1	protein-coding
224744	chr9	21804751	21805100	+	0	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	2289	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
216663	chr8	22136301	22136500	+	0	NA	Intergenic	AluJr|SINE|Alu	-5348	NM_018411	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
40306	chr11	63881221	63881480	+	0	NA	intron (NM_004954, intron 1 of 16)	L2b|LINE|L2	-7187	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
42863	chr11	73288621	73288900	+	0	NA	intron (NM_001277207, intron 2 of 2)	MIR|SINE|MIR	16422	NM_001277204	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
237090	chrX	103940751	103941050	+	0	NA	intron (NM_001350211, intron 1 of 3)	L1PA7|LINE|L1	-21352	NR_146557	100128594		NR_146556		TMSB15B-AS1	-	TMSB15B antisense RNA 1	ncRNA
81251	chr16	4610751	4610850	+	0	NA	intron (NM_001330467, intron 1 of 2)	intron (NM_001330467, intron 1 of 2)	4088	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
85259	chr16	48524771	48525330	+	0	NA	Intergenic	L2b|LINE|L2	85130	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
82677	chr16	19728101	19728300	+	0	NA	intron (NM_001305121, intron 2 of 8)	MLT1E3|LTR|ERVL-MaLR	-9973	NM_001348528	400506		NM_001012991	ENSG00000103550	KNOP1	101F10.1|C16orf88|FAM191A|TSG118	lysine rich nucleolar protein 1	protein-coding
238897	chrX	154613551	154613950	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	5521	NM_001327	1485		NM_001327	ENSG00000184033	CTAG1B	CT6.1|CTAG|CTAG1|ESO1|LAGE-2|LAGE2B|NY-ESO-1	cancer/testis antigen 1B	protein-coding
106381	chr18	13313221	13313680	+	0	NA	intron (NM_001378099, intron 2 of 6)	intron (NM_001378099, intron 2 of 6)	-25153	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
108899	chr18	79424101	79424500	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	24001	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
40455	chr11	64213251	64213650	+	0	NA	intron (NM_001382363, intron 5 of 13)	AluSx|SINE|Alu	5744	NM_001382364	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
179906	chr5	683451	683950	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	9652	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
167670	chr3	130001321	130001580	+	0	NA	Intergenic	Intergenic	26730	NM_007117	7200		NM_007117	ENSG00000170893	TRH	Pro-TRH|TRF	thyrotropin releasing hormone	protein-coding
34650	chr10	133328671	133329030	+	0	NA	intron (NM_015722, intron 2 of 5)	intron (NM_015722, intron 2 of 5)	8046	NM_015722	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
209	chr1	780421	781130	+	0	NA	Intergenic	AluJb|SINE|Alu	-2141	NR_168328	100288069		NR_168328		LOC100288069	-	uncharacterized LOC100288069	ncRNA
88279	chr16	83826001	83826530	+	0	NA	Intergenic	Intergenic	18287	NM_001537	3281		NM_001537	ENSG00000230989	HSBP1	NPC-A-13	heat shock factor binding protein 1	protein-coding
51880	chr12	53498101	53500000	+	0	NA	intron (NM_006301, intron 1 of 14)	intron (NM_006301, intron 1 of 14)	408	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
18224	chr1	161023021	161023680	+	0	NA	Intergenic	AluSp|SINE|Alu	-2198	NM_001382730	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
65527	chr14	51912321	51912930	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	5946	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
1788	chr1	6103371	6103530	+	0	NA	3' UTR (NM_015557, exon 42 of 42)	3' UTR (NM_015557, exon 42 of 42)	57562	NM_001199863	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
221571	chr8	125153851	125154200	+	0	NA	intron (NM_173685, intron 4 of 7)	intron (NM_173685, intron 4 of 7)	62165	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
8929	chr1	44013271	44013630	+	0	NA	intron (NM_201649, intron 1 of 13)	intron (NM_201649, intron 1 of 13)	3713	NM_201649	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
116537	chr19	18200671	18201030	+	0	NA	intron (NM_002866, intron 2 of 4)	AluJo|SINE|Alu	3192	NM_002866	5864		NM_002866	ENSG00000105649	RAB3A	-	RAB3A, member RAS oncogene family	protein-coding
50413	chr12	47365321	47367000	+	0	NA	Intergenic	MER41B|LTR|ERV1	-1891	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
197779	chr6	87670371	87671130	+	0	NA	Intergenic	Intergenic	31483	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
179656	chr4	189491951	189492050	+	0	NA	Intergenic	Intergenic	-167606	NR_121679	101928971		NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
204977	chr7	6385501	6386000	+	0	NA	intron (NM_018890, intron 1 of 6)	intron (NM_018890, intron 1 of 6)	11223	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
235563	chrX	47358271	47358850	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-12018	NM_003446	7712		NM_003446	ENSG00000147117	ZNF157	HZF22	zinc finger protein 157	protein-coding
44037	chr11	95149401	95149600	+	0	NA	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	-1039	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
134979	chr2	152612001	152612400	+	0	NA	intron (NM_052905, intron 11 of 25)	intron (NM_052905, intron 11 of 25)	105261	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
37320	chr11	14786451	14786550	+	0	NA	exon (NM_000922, exon 3 of 16)	exon (NM_000922, exon 3 of 16)	105171	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
80230	chr16	2190221	2190980	+	0	NA	intron (NM_020764, intron 1 of 19)	intron (NM_020764, intron 1 of 19)	6005	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
125512	chr2	12721201	12722080	+	0	NA	intron (NM_021643, intron 1 of 2)	intron (NM_021643, intron 1 of 2)	4704	NR_027303	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
156431	chr22	41231571	41231930	+	0	NA	TTS (NM_031488)	TTS (NM_031488)	9181	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
69968	chr14	99791171	99791330	+	0	NA	intron (NM_001375411, intron 1 of 21)	intron (NM_001375411, intron 1 of 21)	-2163	NM_001008707	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
70428	chr14	102034251	102035050	+	0	NA	intron (NM_001376, intron 56 of 77)	intron (NM_001376, intron 56 of 77)	52394	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
3383	chr1	15728101	15728650	+	0	NA	intron (NM_015164, intron 11 of 19)	intron (NM_015164, intron 11 of 19)	-7883	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
3235	chr1	13785551	13786050	+	0	NA	intron (NM_012231, intron 8 of 9)	intron (NM_012231, intron 8 of 9)	36385	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
97525	chr17	44002501	44003180	+	0	NA	intron (NM_004160, intron 1 of 6)	MIR|SINE|MIR	1605	NM_004160	5697		NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
180089	chr5	1130321	1130580	+	0	NA	Intergenic	Intergenic	-18387	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
43664	chr11	85749701	85750230	+	0	NA	intron (NM_001365827, intron 1 of 17)	intron (NM_001365827, intron 1 of 17)	8104	NM_001162951	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
44814	chr11	113872621	113872880	+	0	NA	intron (NM_020886, intron 1 of 24)	intron (NM_020886, intron 1 of 24)	2822	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
198121	chr6	90396921	90397200	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	84318	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
63032	chr13	112941871	112942030	+	0	NA	Intergenic	LTR13|LTR|ERVK	26688	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
124729	chr2	4734151	4734250	+	0	NA	Intergenic	L1HS|LINE|L1	-77978	NR_034134	727982		NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
7555	chr1	35075151	35075250	+	0	NA	intron (NM_001289088, intron 1 of 10)	L1M2|LINE|L1	-4163	NM_001289089	79830		NM_024772	ENSG00000197056	ZMYM1	MYM	zinc finger MYM-type containing 1	protein-coding
240	chr1	903671	905850	+	0	NA	Intergenic	CpG	14932	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
30218	chr10	74892621	74892950	+	0	NA	intron (NM_012330, intron 3 of 17).2	intron (NM_012330, intron 3 of 17).2	-20001	NR_134476								
214498	chr7	150448451	150449260	+	0	NA	TTS (NR_034033)	TTS (NR_034033)	-1775	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
234072	chrX	8743171	8743530	+	0	NA	Intergenic	Intergenic	-11213	NM_000216	3730		NM_000216	ENSG00000011201	ANOS1	ADMLX|HH1|HHA|KAL|KAL1|KALIG-1|KMS|WFDC19	anosmin 1	protein-coding
83692	chr16	28424971	28425600	+	0	NA	intron (NM_001199142, intron 1 of 21)	AluSc|SINE|Alu	1169	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
49410	chr12	22628251	22628550	+	0	NA	intron (NM_001039481, intron 1 of 2)	intron (NM_001039481, intron 1 of 2)	3229	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
90581	chr17	1560821	1561100	+	0	NA	intron (NM_006224, intron 1 of 11)	intron (NM_006224, intron 1 of 11)	1832	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
205701	chr7	23295921	23296000	+	0	NA	Intergenic	LTR65|LTR|ERV1	-3379	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
82368	chr16	15998171	15998850	+	0	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	48894	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
40937	chr11	65308301	65308900	+	0	NA	Intergenic	Intergenic	-6266	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
238436	chrX	151151771	151151930	+	0	NA	Intergenic	Intergenic	-16372	NR_036256	100422930		NR_036256	ENSG00000265789	MIR4330	-	microRNA 4330	ncRNA
202668	chr6	158784471	158784630	+	0	NA	intron (NM_003379, intron 5 of 12)	intron (NM_003379, intron 5 of 12)	-19797	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
178874	chr4	154807071	154807330	+	0	NA	intron (NM_144979, intron 4 of 4)	intron (NM_144979, intron 4 of 4)	25695	NM_001277173	166863		NM_144979	ENSG00000151962	RBM46	CT68	RNA binding motif protein 46	protein-coding
58921	chr13	19746901	19747300	+	0	NA	intron (NM_001354909, intron 4 of 8)	AluSp|SINE|Alu	35845	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
146430	chr20	49610701	49611800	+	0	NA	Intergenic	Intergenic	-43113	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
78143	chr15	90398271	90398430	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	10108	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
115116	chr19	14354401	14354980	+	0	NA	intron (NR_134908, intron 1 of 3)	intron (NR_134908, intron 1 of 3)	9300	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
155196	chr22	37818501	37819630	+	0	NA	Intergenic	CpG	-4317	NM_003614	8484		NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
103327	chr17	77963371	77964730	+	0	NA	Intergenic	Intergenic	-40187	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
43165	chr11	75346851	75347380	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	4546	NM_004041	408		NM_004041	ENSG00000137486	ARRB1	ARB1|ARR1	arrestin beta 1	protein-coding
233329	chr9	137436071	137436600	+	0	NA	intron (NM_198585, intron 6 of 8)	CpG	5022	NM_198585	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
228529	chr9	100505501	100505700	+	0	NA	intron (NM_001198812, intron 2 of 9)	MER20B|DNA|hAT-Charlie	32451	NM_003692	8577		NM_003692	ENSG00000241697	TMEFF1	C9orf2|CT120.1|H7365|TR-1	transmembrane protein with EGF like and two follistatin like domains 1	protein-coding
34926	chr11	428471	428830	+	0	NA	intron (NM_001347882, intron 11 of 21)	intron (NM_001347882, intron 11 of 21)	-11253	NM_001135053	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
215610	chr7	159166401	159166600	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-21543	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
49211	chr12	15909951	15910480	+	0	NA	Intergenic	MIR|SINE|MIR	-1117	NM_001300779	51071		NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
187267	chr5	141510951	141511300	+	0	NA	exon (NM_018926, exon 4 of 4)	exon (NM_018926, exon 4 of 4)	21884	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
174478	chr4	39867471	39867630	+	0	NA	intron (NM_001100399, intron 22 of 32)	AluSz|SINE|Alu	110361	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
103243	chr17	77509201	77509680	+	0	NA	Intergenic	(ATC)n|Simple_repeat|Simple_repeat	-17561	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
190224	chr5	178240901	178243000	+	0	NA	intron (NM_173465, intron 27 of 28)	intron (NM_173465, intron 27 of 28)	-9128	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
26223	chr10	14581401	14582400	+	0	NA	intron (NM_001282695, intron 2 of 5)	AluJr|SINE|Alu	-9525	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
141807	chr20	322951	323250	+	0	NA	intron (NR_109990, intron 1 of 2)	(ATGA)n|Simple_repeat|Simple_repeat	2152	NR_109990	100507459		NR_109990	ENSG00000225377	NRSN2-AS1	-	NRSN2 antisense RNA 1	ncRNA
136534	chr2	177289771	177290830	+	0	NA	intron (NR_026966, intron 8 of 8)	MIRb|SINE|MIR	23582	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
27426	chr10	31600071	31600450	+	0	NA	Intergenic	FRAM|SINE|Alu	-200505	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
40552	chr11	64322321	64322880	+	0	NA	TTS (NM_012094)	TTS (NM_012094)	-4004	NM_001372071	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
157037	chr22	42567871	42568100	+	0	NA	intron (NM_014509, intron 9 of 11)	AluSq2|SINE|Alu	14026	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
31183	chr10	91194701	91195450	+	0	NA	intron (NM_001257101, intron 1 of 9)	L2a|LINE|L2	-25076	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
15152	chr1	148945901	148946300	+	0	NA	intron (NM_001198834, intron 5 of 43)	MamGypLTR1a|LTR|Gypsy	-6024	NM_001002811	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
3861	chr1	16960371	16961980	+	0	NA	intron (NM_014675, intron 27 of 36)	CpG	19445	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
43190	chr11	75408921	75409180	+	0	NA	intron (NM_001256802, intron 6 of 6)	AluJr|SINE|Alu	4629	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
169555	chr3	170220221	170220580	+	0	NA	Intergenic	L1MB7|LINE|L1	-2024	NM_002740	5584		NM_002740	ENSG00000163558	PRKCI	DXS1179E|PKCI|nPKC-iota	protein kinase C iota	protein-coding
143966	chr20	32839451	32840250	+	0	NA	exon (NM_012325, exon 5 of 7)	exon (NM_012325, exon 5 of 7)	-19073	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
4228	chr1	19475151	19475830	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	8805	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
40044	chr11	62708661	62710300	+	0	NA	TTS (NM_012202)	TTS (NM_012202)	139	NR_037948								
208068	chr7	56083871	56084550	+	0	NA	exon (NM_001258459, exon 5 of 11)	exon (NM_001258459, exon 5 of 11)	8742	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
223638	chr8	144337551	144339580	+	0	NA	Intergenic	CpG-27798	-2083	NM_031309	83482		NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding
218894	chr8	60671871	60672030	+	0	NA	Intergenic	L2b|LINE|L2	-6790	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
114272	chr19	11577751	11578130	+	0	NA	promoter-TSS (NM_001611)	promoter-TSS (NM_001611)	-295	NM_001611	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
219361	chr8	70364771	70365330	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	38340	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
77311	chr15	82420701	82421130	+	0	NA	Intergenic	Intergenic	-9065	NM_198181	440295		NM_198181	ENSG00000197978	GOLGA6L9	GOLGA6L20	golgin A6 family like 9	protein-coding
139630	chr2	225665401	225665750	+	0	NA	intron (NM_001371273, intron 7 of 7)	intron (NM_001371273, intron 7 of 7)	264689	NM_020864	57624		NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding
71870	chr15	22371421	22371880	+	0	NA	Intergenic	Intergenic	66376	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
31728	chr10	97701521	97702000	+	0	NA	Intergenic	AluJb|SINE|Alu	-11970	NM_031484	83742		NM_031484	ENSG00000155254	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
239136	chrY	11316001	11316200	+	0	NA	Intergenic	Intergenic	1105490	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
125759	chr2	23351571	23351880	+	0	NA	Intergenic	Intergenic	-33454	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
30026	chr10	73793571	73793980	+	0	NA	intron (NM_015037, intron 11 of 25)	intron (NM_015037, intron 11 of 25)	7624	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
63245	chr13	113939271	113939850	+	0	NA	Intergenic	Intergenic	-10569	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
80431	chr16	2638921	2639930	+	0	NA	non-coding (NR_024492, exon 1 of 1)	non-coding (NR_024492, exon 1 of 1)	443	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
97422	chr17	43482201	43482400	+	0	NA	Intergenic	Intergenic	-1565	NR_136227	1659		NM_004941	ENSG00000067596	DHX8	DDX8|Dhr2|HRH1|PRP22|PRPF22	DEAH-box helicase 8	protein-coding
152139	chr22	19977521	19977780	+	0	NA	intron (NM_001670, intron 8 of 19)	intron (NM_001670, intron 8 of 19)	13897	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
164840	chr3	71031971	71032630	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	32624	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
212920	chr7	130912651	130914370	+	0	NA	promoter-TSS (NR_034120)	promoter-TSS (NR_034120)	46	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
48067	chr12	7113101	7113830	+	0	NA	intron (NR_026947, intron 6 of 11)	intron (NR_026947, intron 6 of 11)	-4251	NM_001297640	51279		NM_016546	ENSG00000139178	C1RL	C1RL1|C1RLP|C1r-LP|CLSPa	complement C1r subcomponent like	protein-coding
2605	chr1	9942911	9944630	+	0	NA	promoter-TSS (NM_001316973)	promoter-TSS (NM_001316973)	295	NM_001297779	64802		NM_022787	ENSG00000173614	NMNAT1	LCA9|NMNAT|PNAT1|SHILCA	nicotinamide nucleotide adenylyltransferase 1	protein-coding
164375	chr3	58217251	58217630	+	0	NA	Intergenic	Intergenic	-6437	NM_001256560	1776		NM_004944	ENSG00000163687	DNASE1L3	D3|DHP2|DNAS1L3|LSD|SLEB16	deoxyribonuclease 1L3	protein-coding
55526	chr12	105320651	105320750	+	0	NA	intron (NR_131986, intron 1 of 2)	intron (NR_131986, intron 1 of 2)	6317	NR_131986	105369954		NR_131986	ENSG00000257642	C12orf75-AS1	KCCAT198	C12orf75 antisense RNA 1	ncRNA
62459	chr13	99359621	99360100	+	0	NA	intron (NR_026644, intron 7 of 8)	intron (NR_026644, intron 7 of 8)	3729	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
199421	chr6	116682101	116683180	+	0	NA	intron (NM_001366307, intron 2 of 14)	intron (NM_001366307, intron 2 of 14)	1429	NM_001366305	3841		NM_002269	ENSG00000196911	KPNA5	IPOA6|SRP6	karyopherin subunit alpha 5	protein-coding
58503	chr12	132170221	132170750	+	0	NA	Intergenic	Intergenic	19210	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
106835	chr18	24019501	24020430	+	0	NA	3' UTR (NM_001243425, exon 2 of 2)	3' UTR (NM_001243425, exon 2 of 2)	-4505	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
44944	chr11	116782801	116783200	+	0	NA	exon (NM_003904, exon 11 of 14)	exon (NM_003904, exon 11 of 14)	5023	NM_003904	8882		NM_003904	ENSG00000109917	ZPR1	GKAF|ZNF259	ZPR1 zinc finger	protein-coding
89514	chr16	89168451	89168550	+	0	NA	non-coding (NR_046200, exon 3 of 3)	non-coding (NR_046200, exon 3 of 3)	2117	NR_046200	400558		NR_046200	ENSG00000205015	LINC02138	-	long intergenic non-protein coding RNA 2138	ncRNA
170740	chr3	188268551	188268650	+	0	NA	intron (NR_164692, intron 2 of 9)	MER57B2|LTR|ERV1	55704	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
207430	chr7	44495451	44496480	+	0	NA	Intergenic	L1MC3|LINE|L1	-5307	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
191179	chr6	5085271	5085650	+	0	NA	5' UTR (NM_001145115, exon 1 of 1)	5' UTR (NM_001145115, exon 1 of 1)	119	NM_001145115	648791		NM_001145115	ENSG00000219607	PPP1R3G	-	protein phosphatase 1 regulatory subunit 3G	protein-coding
47000	chr12	153171	153480	+	0	NA	intron (NM_015232, intron 4 of 12).2	intron (NM_015232, intron 4 of 12).2	-4156	NR_033859	574538		NR_033859	ENSG00000249695	LOC574538	-	uncharacterized LOC574538	ncRNA
165479	chr3	99808171	99808780	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-9387	NM_032359	84319		NM_032359	ENSG00000184220	CMSS1	C3orf26	cms1 ribosomal small subunit homolog	protein-coding
221456	chr8	124425671	124426880	+	0	NA	Intergenic	Intergenic	-24545	NM_017956	55039		NM_017956	ENSG00000183665	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog	protein-coding
224175	chr9	5307151	5307450	+	0	NA	Intergenic	(AGAT)n|Simple_repeat|Simple_repeat	-2584	NM_134441	6019		NM_005059	ENSG00000107014	RLN2	H2|H2-RLX|RLXH2|bA12D24.1.1|bA12D24.1.2	relaxin 2	protein-coding
237483	chrX	119821471	119822430	+	0	NA	Intergenic	Intergenic	-30320	NM_001000	6170		NM_001000	ENSG00000198918	RPL39	L39|RPL39P42|RPL39_23_1806|eL39	ribosomal protein L39	protein-coding
85317	chr16	49854851	49855880	+	0	NA	intron (NM_001271620, intron 1 of 7)	CpG	747	NM_001379286	23090		NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
86144	chr16	57734551	57736200	+	0	NA	promoter-TSS (NM_005886)	promoter-TSS (NM_005886)	-395	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
115733	chr19	16260501	16261130	+	0	NA	Intergenic	Intergenic	62904	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
150135	chr21	37700771	37700930	+	0	NA	intron (NM_002240, intron 3 of 3)	MER91B|DNA|hAT-Tip100	215607	NM_002240	3763		NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2	potassium inwardly rectifying channel subfamily J member 6	protein-coding
81450	chr16	8880021	8881330	+	0	NA	Intergenic	AluSp|SINE|Alu	-11663	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
106769	chr18	23689321	23690400	+	0	NA	exon (NM_001302996, exon 1 of 9)	exon (NM_001302996, exon 1 of 9)	407	NM_001127717	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
236767	chrX	78950471	78951230	+	0	NA	intron (NM_001324221, intron 2 of 2)	intron (NM_001324221, intron 2 of 2)	5459	NM_001324225	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
147211	chr20	57383121	57383380	+	0	NA	TTS (NR_149006)	TTS (NR_149006)	-8146	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
157210	chr22	43155371	43155530	+	0	NA	intron (NM_001256530, intron 1 of 3)	intron (NM_001256530, intron 1 of 3)	3515	NM_001256530	706		NM_000714	ENSG00000100300	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|TSPO1|mDRC|pk18	translocator protein	protein-coding
117290	chr19	19484821	19485080	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	30598	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
195356	chr6	36639401	36639600	+	0	NA	Intergenic	Intergenic	-16988	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
36952	chr11	11148221	11148680	+	0	NA	Intergenic	Intergenic	204800	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
107414	chr18	46178301	46178880	+	0	NA	intron (NM_145055, intron 1 of 4)	AluSx|SINE|Alu	4556	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
3110	chr1	12232521	12232780	+	0	NA	intron (NM_018156, intron 1 of 68)	(T)n|Simple_repeat|Simple_repeat	2620	NM_018156	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
140784	chr2	235670321	235670580	+	0	NA	intron (NM_001037131, intron 1 of 17)	CpG	-152529	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
162877	chr3	49371271	49371600	+	0	NA	intron (NM_001313941, intron 3 of 5)	AluSq2|SINE|Alu	-12835	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
179802	chr5	395301	395500	+	0	NA	intron (NR_165159, intron 6 of 13)	intron (NR_165159, intron 6 of 13)	47760	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
66561	chr14	63045471	63045830	+	0	NA	promoter-TSS (NM_139318)	promoter-TSS (NM_139318)	-192	NM_172375	27133		NM_139318	ENSG00000140015	KCNH5	DEE112|EAG2|H-EAG2|Kv10.2|hEAG2	potassium voltage-gated channel subfamily H member 5	protein-coding
41235	chr11	65769821	65770450	+	0	NA	Intergenic	L1MC4|LINE|L1	10841	NM_138368	91056		NM_138368	ENSG00000254470	AP5B1	AP-5|PP1030	adaptor related protein complex 5 subunit beta 1	protein-coding
128544	chr2	60840651	60841150	+	0	NA	Intergenic	Intergenic	40414	NR_033980	400957		NR_033980	ENSG00000228414	REL-DT	LINC01185	REL divergent transcript	ncRNA
133344	chr2	113918451	113918550	+	0	NA	intron (NM_005721, intron 3 of 11)	AluJb|SINE|Alu	-27508	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
129762	chr2	71040721	71041130	+	0	NA	Intergenic	SATR2|Satellite|Satellite	16850	NR_002185	79315		NR_002185	ENSG00000290930	OR7E91P	-	olfactory receptor family 7 subfamily E member 91 pseudogene	pseudo
42203	chr11	68009571	68009730	+	0	NA	promoter-TSS (NM_001290058)	promoter-TSS (NM_001290058)	-677	NM_000694	221		NM_000694	ENSG00000006534	ALDH3B1	ALDH4|ALDH7	aldehyde dehydrogenase 3 family member B1	protein-coding
53071	chr12	57724101	57724930	+	0	NA	3' UTR (NM_001122772, exon 19 of 19)	3' UTR (NM_001122772, exon 19 of 19)	-1725	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
9402	chr1	47444421	47445250	+	0	NA	Intergenic	CpG	6791	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
109683	chr19	1035901	1036530	+	0	NA	exon (NM_001303499, exon 5 of 7)	exon (NM_001303499, exon 5 of 7)	-3892	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
188685	chr5	157279451	157279750	+	0	NA	intron (NM_014376, intron 1 of 30)	intron (NM_014376, intron 1 of 30)	10276	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
24605	chr1	246492671	246492830	+	0	NA	intron (NM_001167740, intron 1 of 11)	intron (NM_001167740, intron 1 of 11)	14529	NM_001375962	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
181488	chr5	42961951	42962650	+	0	NA	Intergenic	Intergenic	31033	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
236510	chrX	71998901	71999380	+	0	NA	intron (NM_001013627, intron 1 of 7)	L2c|LINE|L2	-45269	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
67538	chr14	71103701	71104100	+	0	NA	intron (NM_014982, intron 32 of 35)	intron (NM_014982, intron 32 of 35)	196441	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
18172	chr1	160800551	160801380	+	0	NA	intron (NM_001261456, intron 2 of 9)	L1PB4|LINE|L1	4791	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
213071	chr7	131079651	131080100	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	27155	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
155168	chr22	37695171	37695730	+	0	NA	Intergenic	Intergenic	-1598	NM_001039141	11078		NM_007032	ENSG00000100106	TRIOBP	DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
148516	chr20	64089771	64090230	+	0	NA	intron (NM_001200019, intron 2 of 5)	intron (NM_001200019, intron 2 of 5)	-2688	NM_001318855	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
103570	chr17	78683251	78684300	+	0	NA	intron (NM_017456, intron 10 of 12)	HAL1|LINE|L1	33257	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
115634	chr19	16101901	16102300	+	0	NA	3' UTR (NM_001145160, exon 9 of 9)	3' UTR (NM_001145160, exon 9 of 9)	-9789	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
233023	chr9	137023401	137023700	+	0	NA	intron (NM_212533, intron 2 of 48)	(CCAGC)n|Simple_repeat|Simple_repeat	-3914	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
148831	chr21	8390901	8391700	+	0	NA	non-coding (NR_146151, exon 1 of 1)	non-coding (NR_146151, exon 1 of 1)	-1366	NR_145820	106631781		NR_145820		RNA18SN1	RNA18S4	RNA, 18S ribosomal N1	rRNA
12060	chr1	98405451	98406150	+	0	NA	Intergenic	Intergenic	195089	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
109784	chr19	1143901	1144650	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	-12054	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
141586	chr2	241615601	241616000	+	0	NA	intron (NM_015963, intron 2 of 5)	intron (NM_015963, intron 2 of 5)	1701	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
182804	chr5	68886751	68887050	+	0	NA	Intergenic	L1PA11|LINE|L1	143027	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
16466	chr1	154609301	154610830	+	0	NA	intron (NM_001365046, intron 1 of 15)	L1M5|LINE|L1	-1268	NM_001365048	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
158830	chr3	9781721	9782150	+	0	NA	intron (NM_001278270, intron 8 of 8)	AluJb|SINE|Alu	-10560	NM_001024959	10093		NM_005718	ENSG00000241553	ARPC4	ARC20|DEVLO|P20-ARC	actin related protein 2/3 complex subunit 4	protein-coding
17263	chr1	156385421	156386280	+	0	NA	TTS (NM_020407)	TTS (NM_020407)	16639	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
227873	chr9	93671971	93672130	+	0	NA	intron (NM_005392, intron 17 of 21)	intron (NM_005392, intron 17 of 21)	77209	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
29208	chr10	68987521	68987780	+	0	NA	Intergenic	MIRb|SINE|MIR	-1153	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
5858	chr1	26733451	26733550	+	0	NA	intron (NM_139135, intron 4 of 19)	MIR|SINE|MIR	37485	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
181615	chr5	43676121	43676530	+	0	NA	intron (NM_182977, intron 18 of 21)	intron (NM_182977, intron 18 of 21)	-73095	NR_073113	100652772		NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
188418	chr5	154192651	154192750	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	1967	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
125931	chr2	25145671	25146500	+	0	NA	intron (NM_014971, intron 19 of 22)	L1MC1|LINE|L1	22495	NM_000939	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
208096	chr7	56209401	56209600	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-93083	NM_001145712	389493		NM_001145712	ENSG00000185290	NUPR2	NUPR1L|P8	nuclear protein 2, transcriptional regulator	protein-coding
94253	chr17	28687751	28687850	+	0	NA	intron (NM_003170, intron 23 of 36)	AluSx|SINE|Alu	22304	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
9092	chr1	45014071	45014950	+	0	NA	non-coding (NR_158185, exon 7 of 10)	non-coding (NR_158185, exon 7 of 10)	2256	NR_158185	7389		NM_000374	ENSG00000126088	UROD	PCT|UPD	uroporphyrinogen decarboxylase	protein-coding
120858	chr19	45527021	45527380	+	0	NA	TTS (NM_001017989)	TTS (NM_001017989)	19721	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
67769	chr14	73731071	73731230	+	0	NA	intron (NM_001043318, intron 3 of 11)	intron (NM_001043318, intron 3 of 11)	-16766	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
143998	chr20	33004351	33004530	+	0	NA	promoter-TSS (NM_080675)	promoter-TSS (NM_080675)	-7	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
140683	chr2	234146401	234146750	+	0	NA	Intergenic	Intergenic	95873	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
66292	chr14	61393201	61393800	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	72057	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
14389	chr1	144208771	144209330	+	0	NA	Intergenic	L2a|LINE|L2	39155	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
12095	chr1	99852271	99852430	+	0	NA	intron (NM_000643, intron 2 of 33)	MIRc|SINE|MIR	1375	NM_000646	178		NM_000028	ENSG00000162688	AGL	GDE	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein-coding
30396	chr10	78302701	78304300	+	0	NA	Intergenic	CpG	36158	NR_073447	414243		NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
23155	chr1	226728501	226728880	+	0	NA	intron (NM_002221, intron 2 of 7)	MIRb|SINE|MIR	10485	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
191146	chr6	4281871	4282030	+	0	NA	Intergenic	CpG	-91921	NR_125874	102724096		NR_125874		LOC102724096	-	uncharacterized LOC102724096	ncRNA
51406	chr12	52002871	52003500	+	0	NA	Intergenic	Intergenic	-3761	NM_181711	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
154563	chr22	36252621	36254580	+	0	NA	intron (NM_001136541, intron 1 of 4)	intron (NM_001136541, intron 1 of 4)	467	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
148337	chr20	63786071	63787030	+	0	NA	intron (NM_025224, intron 2 of 4)	AluSc|SINE|Alu	18953	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
14187	chr1	121551151	121551930	+	0	NA	intron (NR_003955, intron 1 of 7)	intron (NR_003955, intron 1 of 7)	32428	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
19049	chr1	169704371	169704730	+	0	NA	intron (NM_000655, intron 5 of 8)	intron (NM_000655, intron 5 of 8)	4307	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
141978	chr20	1357971	1358630	+	0	NA	intron (NR_040047, intron 1 of 2)	intron (NR_040047, intron 1 of 2)	-29161	NM_080489	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
20562	chr1	198717421	198718480	+	0	NA	intron (NM_002838, intron 13 of 32)	intron (NM_002838, intron 13 of 32)	78910	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
79747	chr16	1345351	1345880	+	0	NA	intron (NM_001199097, intron 22 of 33)	intron (NM_001199097, intron 22 of 33)	6263	NM_001001410	115939		NM_001001410	ENSG00000007520	TSR3	C16orf42|HsTsr3	TSR3 ribosome maturation factor	protein-coding
149943	chr21	36322671	36323030	+	0	NA	intron (NM_001320445, intron 1 of 15)	intron (NM_001320445, intron 1 of 15)	2653	NM_015358	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
54019	chr12	75489321	75490430	+	0	NA	TTS (NM_007043)	TTS (NM_007043)	9120	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
136086	chr2	173356871	173357030	+	0	NA	intron (NM_031942, intron 1 of 9)	intron (NM_031942, intron 1 of 9)	2078	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
152267	chr22	20266651	20267630	+	0	NA	intron (NM_023004, intron 1 of 1)	intron (NM_023004, intron 1 of 1)	1178	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
153359	chr22	24429071	24430580	+	0	NA	non-coding (NR_028484, exon 7 of 7)	non-coding (NR_028484, exon 7 of 7)	2226	NM_001278499	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
182037	chr5	55710151	55710450	+	0	NA	intron (NM_001349382, intron 2 of 17)	AluSz|SINE|Alu	2024	NM_173514	153129		NM_173514	ENSG00000177058	SLC38A9	SNAT9|URLC11	solute carrier family 38 member 9	protein-coding
219438	chr8	72018401	72018800	+	0	NA	intron (NR_033652, intron 4 of 4)	intron (NR_033652, intron 4 of 4)	56984	NM_007332	8989		NM_007332	ENSG00000104321	TRPA1	ANKTM1|FEPS|FEPS1|p120	transient receptor potential cation channel subfamily A member 1	protein-coding
200193	chr6	131061301	131061500	+	0	NA	intron (NM_001350314, intron 1 of 15)	intron (NM_001350314, intron 1 of 15)	1845	NM_001431	2037		NM_001431	ENSG00000079819	EPB41L2	4.1-G|4.1G	erythrocyte membrane protein band 4.1 like 2	protein-coding
36617	chr11	7098301	7098530	+	0	NA	Intergenic	Intergenic	9417	NM_014469	27288		NM_014469	ENSG00000170748	RBMXL2	HNRNPG-T|HNRNPGT|HNRPGT	RBMX like 2	protein-coding
46689	chr11	128755671	128755930	+	0	NA	intron (NM_001167681, intron 2 of 9)	intron (NM_001167681, intron 2 of 9)	-59777	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
26706	chr10	22652951	22653750	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	60758	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
94773	chr17	30905621	30906950	+	0	NA	promoter-TSS (NM_024683)	promoter-TSS (NM_024683)	-47	NM_024683	79736		NM_024683	ENSG00000172171	TEFM	C17orf42|COXPD58	transcription elongation factor, mitochondrial	protein-coding
205715	chr7	23465371	23466080	+	0	NA	intron (NM_006547, intron 2 of 14)	intron (NM_006547, intron 2 of 14)	4766	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
96348	chr17	40067971	40068130	+	0	NA	intron (NM_199334, intron 1 of 8)	AluJb|SINE|Alu	5085	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
211091	chr7	102491921	102492500	+	0	NA	intron (NM_001367767, intron 16 of 20)	intron (NM_001367767, intron 16 of 20)	-13288	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
109266	chr19	535401	536080	+	0	NA	intron (NM_004359, intron 1 of 4)	intron (NM_004359, intron 1 of 4)	3980	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
101590	chr17	68086811	68088230	+	0	NA	Intergenic	Intergenic	-14035	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
31830	chr10	99536971	99537350	+	0	NA	TTS (NM_145285)	TTS (NM_145285)	4218	NM_145285	159296		NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
131403	chr2	96272301	96272930	+	0	NA	3' UTR (NM_004804, exon 7 of 7)	3' UTR (NM_004804, exon 7 of 7)	6390	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
20291	chr1	197140071	197140680	+	0	NA	intron (NM_018136, intron 3 of 27)	intron (NM_018136, intron 3 of 27)	6294	NM_018136	259266		NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	assembly factor for spindle microtubules	protein-coding
202818	chr6	159687401	159688030	+	0	NA	intron (NM_001024466, intron 2 of 4)	intron (NM_001024466, intron 2 of 4)	5526	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
135685	chr2	168738121	168738600	+	0	NA	intron (NM_203463, intron 8 of 9)	intron (NM_203463, intron 8 of 9)	48069	NR_045786	100861402		NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
119109	chr19	39333321	39334280	+	0	NA	intron (NM_004877, intron 3 of 6)	MIR|SINE|MIR	2243	NM_001301008	9535		NM_004877	ENSG00000130755	GMFG	GMF-GAMMA	glia maturation factor gamma	protein-coding
208404	chr7	66699971	66700330	+	0	NA	intron (NM_001367745, intron 1 of 7)	intron (NM_001367745, intron 1 of 7)	17984	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
212452	chr7	128421101	128421500	+	0	NA	Intergenic	Intergenic	-11318	NM_183243	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
52604	chr12	56225901	56226930	+	0	NA	exon (NM_024068, exon 6 of 7)	exon (NM_024068, exon 6 of 7)	2073	NM_024068	79035		NM_024068	ENSG00000139579	NABP2	OBFC2B|SOSS-B1|SSB1|hSSB1	nucleic acid binding protein 2	protein-coding
28057	chr10	43266511	43267950	+	0	NA	promoter-TSS (NM_145313)	promoter-TSS (NM_145313)	-165	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
4606	chr1	22090971	22091130	+	0	NA	TTS (NM_044472)	TTS (NM_044472)	38341	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
155072	chr22	37547351	37547650	+	0	NA	Intergenic	MIRb|SINE|MIR	-12980	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
100943	chr17	64483771	64483930	+	0	NA	intron (NM_007215, intron 5 of 7)	AluJb|SINE|Alu	13204	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
193924	chr6	31642071	31642430	+	0	NA	exon (NM_001199698, exon 15 of 24)	exon (NM_001199698, exon 15 of 24)	8463	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
81818	chr16	11558701	11559200	+	0	NA	intron (NR_024320, intron 1 of 3)	MER3|DNA|hAT-Charlie	27423	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
90566	chr17	1515301	1517480	+	0	NA	promoter-TSS (NR_028514)	promoter-TSS (NR_028514)	222	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
178029	chr4	139497801	139498200	+	0	NA	intron (NM_001306199, intron 7 of 7)	intron (NM_001306199, intron 7 of 7)	43879	NM_031296	83452		NM_031296	ENSG00000172007	RAB33B	SMC2	RAB33B, member RAS oncogene family	protein-coding
50919	chr12	49330601	49330800	+	0	NA	exon (NM_005480, exon 13 of 15)	exon (NM_005480, exon 13 of 15)	-6124	NR_120449	101927267		NR_120449	ENSG00000258334	TROAP-AS1	-	TROAP and PRPH antisense RNA 1	ncRNA
72442	chr15	31870051	31871700	+	0	NA	promoter-TSS (NM_001329907).3	promoter-TSS (NM_001329907).3	-202	NM_130901	161725		NM_130901	ENSG00000169918	OTUD7A	C15orf16|C16ORF15|CEZANNE2|NEDHS|OTUD7	OTU deubiquitinase 7A	protein-coding
5388	chr1	25461901	25462280	+	0	NA	intron (NM_018202, intron 6 of 10)	intron (NM_018202, intron 6 of 10)	31193	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
187139	chr5	140532771	140533150	+	0	NA	intron (NM_020690, intron 29 of 35)	AluSx1|SINE|Alu	-14702	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
135418	chr2	161137771	161137930	+	0	NA	intron (NM_133484, intron 1 of 3)	AluSq2|SINE|Alu	887	NM_004180	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
96702	chr17	41434601	41434800	+	0	NA	Intergenic	Intergenic	6283	NM_006771	8687		NM_006771	ENSG00000171360	KRT38	HA8|KRTHA8|hHa8	keratin 38	protein-coding
95031	chr17	32488771	32489280	+	0	NA	3' UTR (NM_003885, exon 2 of 2)	3' UTR (NM_003885, exon 2 of 2)	2032	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
91039	chr17	2856501	2856900	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	60262	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
85119	chr16	34573871	34574450	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-192680	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
81111	chr16	4373521	4374600	+	0	NA	intron (NM_138440, intron 1 of 1)	intron (NM_138440, intron 1 of 1)	2212	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
162371	chr3	47897851	47898200	+	0	NA	intron (NM_001384835, intron 5 of 12)	intron (NM_001384835, intron 5 of 12)	48470	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
137395	chr2	196231871	196232430	+	0	NA	intron (NM_001348768, intron 21 of 28)	intron (NM_001348768, intron 21 of 28)	-27874	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
140266	chr2	232314271	232314630	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-64301	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
116585	chr19	18253201	18253400	+	0	NA	intron (NR_036575, intron 1 of 3)	AluJo|SINE|Alu	2119	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
178323	chr4	145625401	145625600	+	0	NA	intron (NM_001375644, intron 1 of 6)	intron (NM_001375644, intron 1 of 6)	6115	NM_172250	166785		NM_172250	ENSG00000151611	MMAA	cblA	metabolism of cobalamin associated A	protein-coding
92665	chr17	10731201	10731400	+	0	NA	promoter-TSS (NM_001330140)	promoter-TSS (NM_001330140)	-971	NM_001330140	388335		NM_001004313	ENSG00000187824	TMEM220	-	transmembrane protein 220	protein-coding
42726	chr11	72690751	72691600	+	0	NA	intron (NR_161388, intron 25 of 29)	MIRc|SINE|MIR	-9299	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
193199	chr6	29748421	29749930	+	0	NA	promoter-TSS (NR_026973).2	promoter-TSS (NR_026973).2	-126	NR_026973	285830		NM_001003807	ENSG00000214922	HLA-F-AS1	-	HLA-F antisense RNA 1	ncRNA
219867	chr8	85176671	85178880	+	0	NA	promoter-TSS (NR_134311)	promoter-TSS (NR_134311)	621	NM_001951	1875		NM_001951	ENSG00000133740	E2F5	E2F-5	E2F transcription factor 5	protein-coding
161724	chr3	43997851	43998400	+	0	NA	Intergenic	CpG	-116087	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA
84558	chr16	30583801	30584200	+	0	NA	intron (NM_152458, intron 2 of 2)	AluSx1|SINE|Alu	1697	NM_152458	146540		NM_152458	ENSG00000197162	ZNF785	ZNF688	zinc finger protein 785	protein-coding
182210	chr5	56840501	56841300	+	0	NA	intron (NM_005921, intron 1 of 19)	AluSx3|SINE|Alu	25351	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
178247	chr4	143514921	143515580	+	0	NA	promoter-TSS (NR_104027)	promoter-TSS (NR_104027)	-413	NR_104027	100128055		NR_104027	ENSG00000245112	SMARCA5-AS1	-	SMARCA5 antisense RNA 1	ncRNA
162658	chr3	48903421	48903850	+	0	NA	Intergenic	AluY|SINE|Alu	-4753	NM_000387	788		NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	solute carrier family 25 member 20	protein-coding
143612	chr20	31719021	31719900	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-2047	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
92690	chr17	13597871	13598100	+	0	NA	intron (NM_006042, intron 1 of 1)	intron (NM_006042, intron 1 of 1)	3944	NM_006042	9955		NM_006042	ENSG00000153976	HS3ST3A1	3-OST-3A|3OST3A1	heparan sulfate-glucosamine 3-sulfotransferase 3A1	protein-coding
193042	chr6	28538451	28538550	+	0	NA	Intergenic	Intergenic	10169	NR_144470	2880		NM_001509	ENSG00000224586	GPX5	EGLP|GPx-5|GSHPx-5|HEL-S-75p	glutathione peroxidase 5	protein-coding
12473	chr1	107895601	107896350	+	0	NA	intron (NM_006113, intron 1 of 26)	LTR91|LTR|ERVL	-1248	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
208172	chr7	64685901	64686100	+	0	NA	non-coding (NR_104149, exon 3 of 3)	non-coding (NR_104149, exon 3 of 3)	6936	NR_106898	102465505		NR_106898	ENSG00000275667	MIR6839	hsa-mir-6839	microRNA 6839	ncRNA
222171	chr8	132919651	132920150	+	0	NA	intron (NM_003235, intron 21 of 47)	MIRb|SINE|MIR	52942	NM_003235	7038		NM_003235	ENSG00000042832	TG	AITD3|TGN	thyroglobulin	protein-coding
3456	chr1	15938801	15939750	+	0	NA	intron (NM_015001, intron 14 of 14)	intron (NM_015001, intron 14 of 14)	36826	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
12325	chr1	101002451	101003150	+	0	NA	intron (NM_015958, intron 4 of 7)	intron (NM_015958, intron 4 of 7)	22984	NM_001077395	51611		NM_015958	ENSG00000117543	DPH5	AD-018|CGI-30|HSPC143|NEDSFF|NPD015	diphthamide biosynthesis 5	protein-coding
140298	chr2	232432601	232432800	+	0	NA	Intergenic	Intergenic	-23453	NM_001631	248		NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
16280	chr1	154148851	154149150	+	0	NA	intron (NM_207308, intron 2 of 39)	intron (NM_207308, intron 2 of 39)	6116	NM_207308	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
25077	chr10	3851371	3851800	+	0	NA	Intergenic	Intergenic	17635	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
184664	chr5	107673301	107673990	+	0	NA	Intergenic	Intergenic	-2708	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
29186	chr10	68959271	68959630	+	0	NA	intron (NM_001256910, intron 1 of 14)	AluSx1|SINE|Alu	3010	NM_001256910	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
162908	chr3	49405021	49405850	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluSq2|SINE|Alu	6541	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
120677	chr19	45116971	45117800	+	0	NA	intron (NM_019121, intron 1 of 12)	L2c|LINE|L2	24206	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
5596	chr1	26038551	26038850	+	0	NA	3' UTR (NM_001004434, exon 8 of 8)	3' UTR (NM_001004434, exon 8 of 8)	7418	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
141301	chr2	240437471	240437630	+	0	NA	intron (NM_002081, intron 1 of 8)	intron (NM_002081, intron 1 of 8)	1887	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
75695	chr15	67839071	67840870	+	0	NA	promoter-TSS (NR_104080).5	promoter-TSS (NR_104080).5	75	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
216813	chr8	22565151	22568080	+	0	NA	intron (NM_005775, intron 13 of 20)	intron (NM_005775, intron 13 of 20)	886	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
186941	chr5	139644771	139645880	+	0	NA	Intergenic	Intergenic	-1974	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
161623	chr3	43257001	43257200	+	0	NA	Intergenic	Intergenic	-29412	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
30158	chr10	74181671	74182130	+	0	NA	intron (NM_001369124, intron 1 of 9)	intron (NM_001369124, intron 1 of 9)	5137	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
200342	chr6	133966671	133966830	+	0	NA	intron (NM_004865, intron 1 of 6)	L2b|LINE|L2	13526	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
157804	chr22	46798351	46798910	+	0	NA	intron (NM_001284305, intron 4 of 12)	L2b|LINE|L2	24703	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
89135	chr16	88511871	88512030	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	19103	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
41313	chr11	65886321	65886580	+	0	NA	intron (NM_004214, intron 3 of 9)	intron (NM_004214, intron 3 of 9)	2021	NM_198897	9158		NM_004214	ENSG00000172500	FIBP	FGFIBP|FIBP-1|TROFAS	FGF1 intracellular binding protein	protein-coding
160526	chr3	30652021	30652280	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	45549	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
73066	chr15	40910471	40910630	+	0	NA	Intergenic	Intergenic	3741	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
103821	chr17	79103371	79103530	+	0	NA	intron (NM_001082575, intron 7 of 14)	intron (NM_001082575, intron 7 of 14)	28626	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
141034	chr2	238201551	238201650	+	0	NA	intron (NM_030768, intron 1 of 11)	intron (NM_030768, intron 1 of 11)	2095	NM_030768	80895		NM_030768	ENSG00000132323	ILKAP	ILKAP2|ILKAP3|PP2C-DELTA|PP2CD|PPM1O	ILK associated serine/threonine phosphatase	protein-coding
206205	chr7	28272401	28272700	+	0	NA	Intergenic	Intergenic	-26771	NM_182899	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
56587	chr12	117856571	117856730	+	0	NA	intron (NM_173598, intron 2 of 19)	AluSq2|SINE|Alu	112340	NM_173598	283455		NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
105181	chr17	82283301	82283900	+	0	NA	Intergenic	Intergenic	9214	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
184763	chr5	109986051	109986150	+	0	NA	Intergenic	Intergenic	102918	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
53803	chr12	69245551	69245650	+	0	NA	intron (NM_001300947, intron 1 of 10)	intron (NM_001300947, intron 1 of 10)	6031	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
8016	chr1	38018951	38019330	+	0	NA	exon (NM_016037, exon 5 of 8)	exon (NM_016037, exon 5 of 8)	6406	NM_016037	51118		NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11 small subunit processome component	protein-coding
75660	chr15	67744351	67745250	+	0	NA	intron (NM_145160, intron 17 of 21)	intron (NM_145160, intron 17 of 21)	-80709	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
134842	chr2	148653221	148653900	+	0	NA	intron (NM_015630, intron 1 of 13)	intron (NM_015630, intron 1 of 13)	8809	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
9439	chr1	48776501	48777500	+	0	NA	promoter-TSS (NM_024603)	promoter-TSS (NM_024603)	-31	NM_001349794	79656		NM_024603	ENSG00000162373	BEND5	C1orf165	BEN domain containing 5	protein-coding
27648	chr10	32983151	32983750	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-25220	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
99182	chr17	49469651	49469750	+	0	NA	Intergenic	Intergenic	-7951	NR_110805	101927207		NR_110805	ENSG00000249497	LINC02075	-	long intergenic non-protein coding RNA 2075	ncRNA
109298	chr19	562921	563180	+	0	NA	Intergenic	AluSx|SINE|Alu	-8233	NM_198591	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
88601	chr16	85593471	85594200	+	0	NA	Intergenic	Intergenic	-17574	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
153053	chr22	23280121	23280400	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	17493	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
32744	chr10	104313221	104313730	+	0	NA	3' UTR (NM_001272013, exon 2 of 2)	3' UTR (NM_001272013, exon 2 of 2)	-9889	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
51355	chr12	51608671	51608830	+	0	NA	intron (NM_001330260, intron 1 of 26)	L1PB1|LINE|L1	17514	NM_001177984	6334		NM_014191	ENSG00000196876	SCN8A	BFIS5|CERIII|CIAT|DEE13|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4	sodium voltage-gated channel alpha subunit 8	protein-coding
151300	chr21	45537371	45537930	+	0	NA	intron (NM_194255, intron 2 of 5)	CpG	-2894	NM_001205207	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
169632	chr3	171295021	171295280	+	0	NA	intron (NM_001161560, intron 2 of 31)	MLT1J1|LTR|ERVL-MaLR	165255	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
165446	chr3	98557471	98558400	+	0	NA	Intergenic	Intergenic	25957	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
30851	chr10	86535151	86535750	+	0	NA	Intergenic	CpG	-13658	NM_015045	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
208229	chr7	65377221	65377650	+	0	NA	intron (NM_001287534, intron 1 of 1)	intron (NM_001287534, intron 1 of 1)	3580	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
138227	chr2	202762351	202763050	+	0	NA	intron (NM_173511, intron 7 of 7)	intron (NM_173511, intron 7 of 7)	66534	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
139937	chr2	230796321	230796780	+	0	NA	intron (NM_016289, intron 4 of 8)	intron (NM_016289, intron 4 of 8)	-67635	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
209939	chr7	92592221	92592680	+	0	NA	Intergenic	MIRb|SINE|MIR	-2060	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
212627	chr7	129367621	129368550	+	0	NA	promoter-TSS (NM_001130723)	promoter-TSS (NM_001130723)	-295	NM_001130723	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
164430	chr3	59052551	59053100	+	0	NA	Intergenic	L2a|LINE|L2	-2793	NM_001351534	200844		NM_198463	ENSG00000163689	CFAP20DC	C3orf67	CFAP20 domain containing	protein-coding
201344	chr6	144574651	144575050	+	0	NA	intron (NM_007124, intron 49 of 73)	AluSz|SINE|Alu	-8298	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
65710	chr14	52796471	52796980	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-5118	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
151965	chr22	19136001	19136200	+	0	NA	intron (NR_134304, intron 8 of 9)	AluSg|SINE|Alu	4792	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
42522	chr11	70471471	70471630	+	0	NA	non-coding (NR_110766, exon 9 of 9)	non-coding (NR_110766, exon 9 of 9)	73021	NM_005231	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
123543	chr19	54364601	54365180	+	0	NA	promoter-TSS (NM_001289023).4	promoter-TSS (NM_001289023).4	41	NR_110279	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
138343	chr2	203869151	203870430	+	0	NA	intron (NM_001037631, intron 1 of 2)	intron (NM_001037631, intron 1 of 2)	2019	NM_001037631	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
91487	chr17	4897571	4898150	+	0	NA	TTS (NM_000080)	TTS (NM_000080)	-1676	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
140032	chr2	231124851	231125350	+	0	NA	promoter-TSS (NM_001320758)	promoter-TSS (NM_001320758)	-58	NM_001320758	3357		NM_000867	ENSG00000135914	HTR2B	5-HT(2B)|5-HT-2B|5-HT2B	5-hydroxytryptamine receptor 2B	protein-coding
41126	chr11	65567471	65567630	+	0	NA	Intergenic	AluY|SINE|Alu	2863	NR_038923	254100		NR_038923		ZNRD2-DT	SSSCA1-AS1|ZNRD2-AS1	ZNRD2 divergent transcript	ncRNA
172460	chr4	2011001	2011250	+	0	NA	Intergenic	L1ME3G|LINE|L1	-2151	NM_005663	7469		NM_005663	ENSG00000185049	NELFA	NELF-A|P/OKcl.15|WHSC2	negative elongation factor complex member A	protein-coding
226932	chr9	79602021	79602280	+	0	NA	intron (NM_001282760, intron 5 of 20)	Tigger1|DNA|TcMar-Tigger	28973	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
172791	chr4	2948571	2949480	+	0	NA	intron (NM_001291978, intron 8 of 17)	intron (NM_001291978, intron 8 of 17)	13479	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
183785	chr5	81974251	81974750	+	0	NA	intron (NM_031482, intron 1 of 7)	intron (NM_031482, intron 1 of 7)	2477	NM_031482	83734		NM_031482	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
181153	chr5	38968771	38969280	+	0	NA	intron (NM_001285439, intron 11 of 38)	AluSx1|SINE|Alu	105374	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
155147	chr22	37665171	37665330	+	0	NA	intron (NM_020315, intron 1 of 1)	MIR|SINE|MIR	6527	NM_020315	57026		NM_020315	ENSG00000241360	PDXP	CIN|PLP|dJ37E16.5	pyridoxal phosphatase	protein-coding
185076	chr5	116576101	116576430	+	0	NA	intron (NR_147170, intron 1 of 2)	intron (NR_147170, intron 1 of 2)	-1442	NM_020796	57556		NM_020681	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	semaphorin 6A	protein-coding
44983	chr11	116928411	116929050	+	0	NA	intron (NM_001366686, intron 3 of 24)	intron (NM_001366686, intron 3 of 24)	-90780	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
106445	chr18	13672171	13673000	+	0	NA	intron (NM_001098801, intron 3 of 4)	AluSc5|SINE|Alu	30827	NM_001276251	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207375	chr7	44112571	44112730	+	0	NA	exon (NM_001129, exon 18 of 21)	exon (NM_001129, exon 18 of 21)	1801	NR_039792	100616346		NR_039792	ENSG00000284412	MIR4649	mir-4649	microRNA 4649	ncRNA
59080	chr13	20943371	20943980	+	0	NA	intron (NR_104058, intron 2 of 5)	intron (NR_104058, intron 2 of 5)	5753	NR_104058	101930748		NR_104058	ENSG00000293217	LINC00367	-	long intergenic non-protein coding RNA 367	ncRNA
207840	chr7	50342571	50343080	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	23777	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
102058	chr17	74892451	74892750	+	0	NA	exon (NM_178128, exon 2 of 6)	exon (NM_178128, exon 2 of 6)	1033	NM_178128	283985		NM_178128	ENSG00000172782	FADS6	FP18279	fatty acid desaturase 6	protein-coding
151851	chr22	18569671	18570000	+	0	NA	Intergenic	AluSz6|SINE|Alu	-21007	NR_003563	728233		NR_003563	ENSG00000290425	PI4KAP1	-	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudo
58714	chr12	132572651	132573480	+	0	NA	intron (NM_001142641, intron 11 of 16)	intron (NM_001142641, intron 11 of 16)	-8932	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
32056	chr10	101063851	101064530	+	0	NA	intron (NM_030929, intron 2 of 4)	intron (NM_030929, intron 2 of 4)	-2193	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
78184	chr15	90557071	90557700	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	27462	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
215917	chr8	8227271	8229150	+	0	NA	promoter-TSS (NR_024361)	promoter-TSS (NR_024361)	-360	NR_024363	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
8610	chr1	41639271	41639750	+	0	NA	intron (NM_001127714, intron 1 of 7)	MIRb|SINE|MIR	-154827	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
122695	chr19	49897601	49898500	+	0	NA	intron (NR_047577, intron 4 of 10)	AluSx|SINE|Alu	-1163	NM_152899	259307		NM_152899	ENSG00000104951	IL4I1	FIG1|LAAO|LAO|hIL4I1	interleukin 4 induced 1	protein-coding
81952	chr16	11848601	11848800	+	0	NA	intron (NM_015659, intron 2 of 8)	AluJo|SINE|Alu	2842	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
58675	chr12	132539621	132540480	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	34644	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
147354	chr20	58312771	58312930	+	0	NA	intron (NM_020673, intron 2 of 6)	intron (NM_020673, intron 2 of 6)	3135	NM_020673	57403		NM_020673	ENSG00000124209	RAB22A	-	RAB22A, member RAS oncogene family	protein-coding
160722	chr3	32432551	32433730	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	41287	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
109032	chr18	79732821	79733680	+	0	NA	intron (NM_001318511, intron 11 of 11)	CpG	51820	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
89703	chr16	89401751	89402080	+	0	NA	intron (NR_045839, intron 2 of 9)	MLT1C|LTR|ERVL-MaLR	-29003	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
186675	chr5	138650951	138651050	+	0	NA	Intergenic	Intergenic	-75599	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
40276	chr11	63838411	63840140	+	0	NA	5' UTR (NM_001163296, exon 1 of 17)	5' UTR (NM_001163296, exon 1 of 17)	165	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
238024	chrX	135096201	135096600	+	0	NA	3' UTR (NM_001348255, exon 2 of 2)	3' UTR (NM_001348255, exon 2 of 2)	2312	NM_001348255	644596		NM_001348255	ENSG00000196972	SMIM10L2B	LINC00086|LINC00087|NCRNA00086|NCRNA00087|SMIM10L2A	small integral membrane protein 10 like 2B	protein-coding
182128	chr5	56128001	56128400	+	0	NA	intron (NM_024669, intron 7 of 11)	intron (NM_024669, intron 7 of 11)	105130	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
236748	chrX	78331651	78331950	+	0	NA	Intergenic	Intergenic	-4109	NM_001282186	10800		NM_006639	ENSG00000173198	CYSLTR1	CYSLT1|CYSLT1R|CYSLTR|HMTMF81	cysteinyl leukotriene receptor 1	protein-coding
130173	chr2	79512701	79512900	+	0	NA	promoter-TSS (NM_004389)	promoter-TSS (NM_004389)	-134	NM_001164883	1496		NM_004389	ENSG00000066032	CTNNA2	CAP-R|CAPR|CDCBM9|CT114|CTNR	catenin alpha 2	protein-coding
31144	chr10	89837021	89838200	+	0	NA	non-coding (NR_038382, exon 4 of 4)	non-coding (NR_038382, exon 4 of 4)	8117	NR_038382	643529		NR_038382	ENSG00000232229	LINC00865	-	long intergenic non-protein coding RNA 865	ncRNA
46381	chr11	126280571	126281130	+	0	NA	Intergenic	Intergenic	-2237	NM_001318777	114609		NM_052887	ENSG00000150455	TIRAP	BACTS1|Mal|MyD88-2|wyatt	TIR domain containing adaptor protein	protein-coding
116359	chr19	17871621	17873130	+	0	NA	exon (NM_000453, exon 1 of 15)	exon (NM_000453, exon 1 of 15)	430	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
60429	chr13	40993971	40994450	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	-11311	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
101023	chr17	64779551	64779650	+	0	NA	non-coding (NR_027487, exon 3 of 3)	non-coding (NR_027487, exon 3 of 3)	-1159	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
79969	chr16	1780151	1780580	+	0	NA	intron (NM_080861, intron 2 of 6)	intron (NM_080861, intron 2 of 6)	1457	NM_001324081	90864		NM_080861	ENSG00000162032	SPSB3	C16orf31|SSB3	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding
40083	chr11	62783301	62783730	+	0	NA	intron (NM_006473, intron 9 of 10)	intron (NM_006473, intron 9 of 10)	-3887	NM_001363601	374395		NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
126039	chr2	25372601	25372800	+	0	NA	Intergenic	Intergenic	-30110	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
231570	chr9	131498571	131498950	+	0	NA	3' UTR (NM_001384822, exon 31 of 31)	3' UTR (NM_001384822, exon 31 of 31)	-4158	NM_001374695	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
174822	chr4	48212251	48212550	+	0	NA	intron (NM_003215, intron 2 of 17)	intron (NM_003215, intron 2 of 17)	57438	NM_003215	7006		NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
237158	chrX	107480171	107480930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-41900	NM_032428	84443		NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
36450	chr11	5688401	5688880	+	0	NA	Intergenic	AluJb|SINE|Alu	-1150	NM_006074	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
110121	chr19	1577121	1577380	+	0	NA	3' UTR (NM_001281454, exon 7 of 7)	3' UTR (NM_001281454, exon 7 of 7)	-8925	NM_001174118	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
141850	chr20	545071	545430	+	0	NA	Intergenic	Intergenic	-1460	NM_177560	1457		NM_001895	ENSG00000101266	CSNK2A1	CK2A1|CKII|Cka1|Cka2|OCNDS	casein kinase 2 alpha 1	protein-coding
176005	chr4	82213421	82213950	+	0	NA	Intergenic	Intergenic	160306	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
49842	chr12	32657621	32657880	+	0	NA	Intergenic	MamTip3|DNA|hAT-Tip100	-21450	NM_001278463	10059		NM_005690	ENSG00000087470	DNM1L	DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5	dynamin 1 like	protein-coding
21068	chr1	203300221	203300700	+	0	NA	non-coding (NR_034150, exon 3 of 3)	non-coding (NR_034150, exon 3 of 3)	4865	NR_034150	730227		NR_034150	ENSG00000233791	BTG2-DT	LINC01136	BTG2 divergent transcript	ncRNA
71395	chr14	105521871	105522250	+	0	NA	Intergenic	AluJb|SINE|Alu	-4523	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
213893	chr7	142455751	142455850	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-18727	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
97920	chr17	45142701	45143180	+	0	NA	3' UTR (NM_001135707, exon 10 of 10)	3' UTR (NM_001135707, exon 10 of 10)	-5535	NM_006460	10614		NM_006460	ENSG00000186834	HEXIM1	CLP1|EDG1|HIS1|MAQ1	HEXIM P-TEFb complex subunit 1	protein-coding
120699	chr19	45170001	45170600	+	0	NA	intron (NM_001270891, intron 1 of 5)	intron (NM_001270891, intron 1 of 5)	7937	NM_024108	79090		NM_024108	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex subunit 6A	protein-coding
20766	chr1	201007101	201007700	+	0	NA	intron (NM_017596, intron 3 of 33)	intron (NM_017596, intron 3 of 33)	16314	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
56249	chr12	111995951	111996600	+	0	NA	intron (NM_138341, intron 2 of 9)	L1ME3B|LINE|L1	16890	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
45613	chr11	118906951	118907850	+	0	NA	intron (NM_001378214, intron 4 of 8)	intron (NM_001378214, intron 4 of 8)	3142	NM_182557	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
238942	chrX	154827551	154827850	+	0	NA	intron (NM_001162936, intron 4 of 4)	MLT1J2|LTR|ERVL-MaLR	6962	NM_001162936	100132963		NM_001162936	ENSG00000203870	SMIM9	CXorf68	small integral membrane protein 9	protein-coding
6411	chr1	27994201	27994550	+	0	NA	intron (NR_104214, intron 14 of 16)	MLT1F|LTR|ERVL-MaLR	34402	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
148441	chr20	63976421	63976880	+	0	NA	intron (NM_080621, intron 3 of 4)	AluSq2|SINE|Alu	2992	NM_080621	140700		NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
84445	chr16	30415021	30415480	+	0	NA	intron (NM_016643, intron 2 of 2)	AluSz|SINE|Alu	4509	NR_145731	109616959		NR_145731	ENSG00000199787	SNORA80C	-	small nucleolar RNA, H/ACA box 80C	snoRNA
158440	chr22	50604771	50605500	+	0	NA	intron (NM_012324, intron 5 of 11)	intron (NM_012324, intron 5 of 11)	4342	NM_012324	23542		NM_012324	ENSG00000008735	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
69598	chr14	97394871	97395030	+	0	NA	Intergenic	Intergenic	-63866	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
108244	chr18	63216421	63217630	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	102744	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
86728	chr16	67580871	67581230	+	0	NA	intron (NM_001191022, intron 2 of 9)	AluYk3|SINE|Alu	10277	NM_001363916	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
231243	chr9	129982521	129982780	+	0	NA	intron (NM_001363755, intron 2 of 15)	intron (NM_001363755, intron 2 of 15)	60539	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
227091	chr9	85718251	85718450	+	0	NA	intron (NM_001330701, intron 1 of 25)	L1PA6|LINE|L1	23604	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
143809	chr20	32468921	32469380	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	14340	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
126333	chr2	27366201	27366600	+	0	NA	intron (NM_172195, intron 10 of 11)	intron (NM_172195, intron 10 of 11)	3652	NM_001318965	8890		NM_015636	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta|VWM4	eukaryotic translation initiation factor 2B subunit delta	protein-coding
71360	chr14	105480401	105481300	+	0	NA	TTS (NM_001270841)	TTS (NM_001270841)	3607	NR_073085	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
101329	chr17	66712001	66712550	+	0	NA	intron (NM_002737, intron 8 of 16)	intron (NM_002737, intron 8 of 16)	-74797	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
116053	chr19	17215101	17216350	+	0	NA	intron (NM_018467, intron 1 of 7)	CpG	368	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
4490	chr1	21647921	21648200	+	0	NA	intron (NM_001350524, intron 4 of 27)	intron (NM_001350524, intron 4 of 27)	3838	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
231327	chr9	130138621	130139080	+	0	NA	3' UTR (NM_020960, exon 18 of 18)	3' UTR (NM_020960, exon 18 of 18)	5369	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
194401	chr6	33008251	33008630	+	0	NA	intron (NM_002119, intron 1 of 4)	GA-rich|Low_complexity|Low_complexity	1151	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
13946	chr1	120342871	120343480	+	0	NA	Intergenic	L2b|LINE|L2	-71852	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
209751	chr7	87203971	87204350	+	0	NA	intron (NR_138030, intron 1 of 3)	THE1B|LTR|ERVL-MaLR	15572	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
88309	chr16	84148501	84148950	+	0	NA	intron (NM_178452, intron 1 of 11)	AluJb|SINE|Alu	3417	NM_178452	123872		NM_178452	ENSG00000154099	DNAAF1	CILD13|DAU1|LRRC50|ODA7|swt	dynein axonemal assembly factor 1	protein-coding
26502	chr10	18627501	18628400	+	0	NA	intron (NM_001351118, intron 1 of 8)	L1PA3|LINE|L1	23637	NM_182543	221078		NM_182543	ENSG00000241058	NSUN6	4933414E04Rik|ARL5B-AS1|MRT82|NOPD1	NOP2/Sun RNA methyltransferase 6	protein-coding
55655	chr12	107328771	107329130	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	8362	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
239278	chrY	13746151	13746250	+	0	NA	Intergenic	L1PA3|LINE|L1	42301	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
193177	chr6	29720551	29721280	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2425	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
138049	chr2	201424101	201424650	+	0	NA	intron (NM_015049, intron 1 of 15)	intron (NM_015049, intron 1 of 15)	27083	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
90762	chr17	2055701	2056300	+	0	NA	promoter-TSS (NM_001098202)	promoter-TSS (NM_001098202)	-310	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
123270	chr19	53467301	53468530	+	0	NA	intron (NM_001004301, intron 1 of 3)	CpG	182	NM_001004301	126017		NM_001004301	ENSG00000198346	ZNF813	-	zinc finger protein 813	protein-coding
153585	chr22	26705321	26705580	+	0	NA	intron (NR_110543, intron 1 of 5)	L1PA13|LINE|L1	32607	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
208047	chr7	56004651	56005150	+	0	NA	Intergenic	MER54A|LTR|ERVL	40315	NM_001202469	2631		NM_001483	ENSG00000146729	NIPSNAP2	GBAS	nipsnap homolog 2	protein-coding
196119	chr6	42385051	42385750	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	66651	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
175956	chr4	81052401	81052630	+	0	NA	intron (NM_001201, intron 2 of 2)	intron (NM_001201, intron 2 of 2)	21807	NM_001201	651		NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
58222	chr12	128267101	128267250	+	0	NA	promoter-TSS (NM_001136103)	promoter-TSS (NM_001136103)	-228	NM_001136103	92293		NM_001136103	ENSG00000181234	TMEM132C	PPP1R152	transmembrane protein 132C	protein-coding
86183	chr16	57884251	57884550	+	0	NA	exon (NM_001286130, exon 33 of 33)	exon (NM_001286130, exon 33 of 33)	73763	NM_001278081	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
228738	chr9	109880501	109880800	+	0	NA	exon (NM_001037293, exon 4 of 7)	exon (NM_001037293, exon 4 of 7)	100452	NM_053016	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
170518	chr3	186532871	186533230	+	0	NA	Intergenic	(CTCCC)n|Simple_repeat|Simple_repeat	11330	NM_017541	1427		NM_017541	ENSG00000213139	CRYGS	CRYG8|CTRCT20	crystallin gamma S	protein-coding
8978	chr1	44636771	44636930	+	0	NA	intron (NM_001319957, intron 7 of 13)	intron (NM_001319957, intron 7 of 13)	4882	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
138192	chr2	202660571	202660730	+	0	NA	intron (NM_173511, intron 1 of 7)	L1MEf|LINE|L1	25681	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
82711	chr16	20844021	20845150	+	0	NA	intron (NM_030941, intron 16 of 19)	intron (NM_030941, intron 16 of 19)	38058	NM_001144924	81691		NM_030941	ENSG00000005189	REXO5	NEF-sp	RNA exonuclease 5	protein-coding
146692	chr20	50539251	50539550	+	0	NA	intron (NM_001278618, intron 1 of 8)	L1M8|LINE|L1	29017	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
18636	chr1	166845821	166846080	+	0	NA	intron (NM_001314014, intron 2 of 3)	intron (NM_001314014, intron 2 of 3)	6475	NM_001314014	57645		NM_017542	ENSG00000143157	POGK	BASS2|KRBOX2|LST003	pogo transposable element derived with KRAB domain	protein-coding
175606	chr4	75848251	75848550	+	0	NA	Intergenic	Intergenic	54052	NM_006239	5470		NM_006239	ENSG00000156194	PPEF2	PPP7CB	protein phosphatase with EF-hand domain 2	protein-coding
187248	chr5	141407821	141408300	+	0	NA	promoter-TSS (NM_018926)	promoter-TSS (NM_018926)	-143	NM_032100	56100		NM_018926	ENSG00000253305	PCDHGB6	PCDH-GAMMA-B6	protocadherin gamma subfamily B, 6	protein-coding
9295	chr1	46447771	46448080	+	0	NA	intron (NR_121680, intron 1 of 2)	intron (NR_121680, intron 1 of 2)	1779	NR_121680	101929651		NR_121680	ENSG00000224863	LINC01398	-	long intergenic non-protein coding RNA 1398	ncRNA
4000	chr1	18920651	18921150	+	0	NA	intron (NM_001136265, intron 2 of 8)	intron (NM_001136265, intron 2 of 8)	-18101	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
96506	chr17	40317371	40319390	+	0	NA	5' UTR (NM_001145302, exon 1 of 7)	5' UTR (NM_001145302, exon 1 of 7)	135	NM_001145302	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
24573	chr1	245020021	245020280	+	0	NA	intron (NM_001290327, intron 3 of 7)	intron (NM_001290327, intron 3 of 7)	-49281	NR_111907	101928068		NR_111907		LOC101928068	-	uncharacterized LOC101928068	ncRNA
196060	chr6	42142001	42142800	+	0	NA	exon (NM_001164446, exon 1 of 5)	exon (NM_001164446, exon 1 of 5)	220	NM_001164446	647024		NM_001164446	ENSG00000188112	C6orf132	LncCCLM|bA7K24.2	chromosome 6 open reading frame 132	protein-coding
77619	chr15	85402151	85402450	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	21697	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
60501	chr13	41323171	41323530	+	0	NA	intron (NM_024561, intron 5 of 19)	AluY|SINE|Alu	-11312	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
174795	chr4	48057471	48057830	+	0	NA	Intergenic	L1HS|LINE|L1	40878	NM_207330	152519		NM_207330	ENSG00000163293	NIPAL1	NIPA3|NPAL1|SLC57A3	NIPA like domain containing 1	protein-coding
217456	chr8	28701071	28702500	+	0	NA	promoter-TSS (NR_126027)	promoter-TSS (NR_126027)	284	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
83005	chr16	22197401	22198030	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-8563	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
229189	chr9	114616421	114617280	+	0	NA	intron (NM_001330760, intron 1 of 8)	intron (NM_001330760, intron 1 of 8)	5559	NM_153045	203197		NM_153045	ENSG00000157693	TMEM268	C9orf91	transmembrane protein 268	protein-coding
118575	chr19	36273271	36273830	+	0	NA	Intergenic	SST1|Satellite|centr	-27622	NM_001366188	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
15911	chr1	151706021	151707000	+	0	NA	intron (NM_007185, intron 9 of 12)	intron (NM_007185, intron 9 of 12)	10293	NM_001172649	11189		NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP Elav-like family member 3	protein-coding
662	chr1	1363851	1364150	+	0	NA	promoter-TSS (NM_001282582)	promoter-TSS (NM_001282582)	-459	NM_001282582	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
169083	chr3	153797271	153797430	+	0	NA	Intergenic	L1PA3|LINE|L1	-34824	NR_146713	105374165		NR_146713		LINC02006	-	long intergenic non-protein coding RNA 2006	ncRNA
11919	chr1	93446671	93447250	+	0	NA	Intergenic	Intergenic	-1158	NM_017737	54874		NM_017737	ENSG00000137942	FNBP1L	C1orf39|TOCA1	formin binding protein 1 like	protein-coding
68210	chr14	76904601	76905250	+	0	NA	Intergenic	Intergenic	-54713	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
160895	chr3	33799971	33800430	+	0	NA	intron (NM_001256192, intron 1 of 5)	MLT1K|LTR|ERVL-MaLR	1570	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
121290	chr19	46724901	46725100	+	0	NA	intron (NM_001039877, intron 11 of 17)	intron (NM_001039877, intron 11 of 17)	-7873	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
129566	chr2	69916921	69917180	+	0	NA	intron (NM_001202514, intron 2 of 4)	intron (NM_001202514, intron 2 of 4)	1941	NM_001202513	4084		NM_002357	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
206182	chr7	28135721	28135980	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-44607	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
3270	chr1	15154101	15154530	+	0	NA	intron (NR_135082, intron 1 of 2)	CpG	568	NM_018022	55092		NM_018022	ENSG00000171729	TMEM51	C1orf72	transmembrane protein 51	protein-coding
173324	chr4	7608021	7608280	+	0	NA	intron (NM_020777, intron 3 of 26)	LTR16C|LTR|ERVL	-145940	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
214144	chr7	144354951	144356230	+	0	NA	non-coding (NR_126023, exon 1 of 5).2	non-coding (NR_126023, exon 1 of 5).2	128	NR_126022	101928605		NR_126022		ARHGEF35-AS1	-	ARHGEF35 antisense RNA 1	ncRNA
191197	chr6	5302301	5302870	+	0	NA	intron (NM_001374876, intron 2 of 7)	MIR|SINE|MIR	41072	NM_001374879	10667		NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
114994	chr19	14048321	14049130	+	0	NA	intron (NM_004843, intron 8 of 13)	LTR16C|LTR|ERVL	8913	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
154914	chr22	37197101	37197530	+	0	NA	intron (NM_001365878, intron 2 of 4)	intron (NM_001365878, intron 2 of 4)	2108	NM_001365878	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
88107	chr16	81550071	81550650	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	16458	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
158054	chr22	49948551	49948650	+	0	NA	Intergenic	Intergenic	-12172	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
10406	chr1	65230751	65231150	+	0	NA	3' UTR (NM_013410, exon 5 of 5)	3' UTR (NM_013410, exon 5 of 5)	-33744	NM_001256865	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
118462	chr19	35880901	35881300	+	0	NA	Intergenic	MIR|SINE|MIR	12526	NM_001024807	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
148712	chr21	6508951	6509130	+	0	NA	Intergenic	LTR13|LTR|ERVK	-9756	NM_001320651	102724594		NM_001320646	ENSG00000275895	LOC102724594	U2AF1L5	U2 small nuclear RNA auxiliary factor 1 like 5	protein-coding
185049	chr5	115843141	115843550	+	0	NA	intron (NR_157087, intron 1 of 5)	intron (NR_157087, intron 1 of 5)	858	NR_157087	1176		NM_001284	ENSG00000177879	AP3S1	CLAPS3|Sigma3A	adaptor related protein complex 3 subunit sigma 1	protein-coding
157128	chr22	42720151	42721250	+	0	NA	intron (NR_146459, intron 1 of 1)	CpG	170	NM_017436	53947		NM_017436	ENSG00000128274	A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	alpha 1,4-galactosyltransferase (P1PK blood group)	protein-coding
168190	chr3	141011521	141011880	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-39647	NM_080862	92369		NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
190409	chr5	179815101	179815380	+	0	NA	intron (NM_001142298, intron 2 of 8).2	AluSz6|SINE|Alu	-5665	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
124691	chr2	3527321	3528000	+	0	NA	Intergenic	(TGGTGTG)n|Simple_repeat|Simple_repeat	-8129	NM_018269	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
141782	chr2	242180551	242180650	+	0	NA	Intergenic	L1MC|LINE|L1	91967	NR_130699	728323		NR_024437		LINC01881	-	long intergenic non-protein coding RNA 1881	ncRNA
226164	chr9	63860621	63860900	+	0	NA	Intergenic	LTR89|LTR|ERVL?	-1126	NR_033907	642236		NR_033907		FRG1JP	-	FSHD region gene 1 family member J, pseudogene	pseudo
39541	chr11	61108801	61109330	+	0	NA	intron (NM_014207, intron 1 of 10)	intron (NM_014207, intron 1 of 10)	6576	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
89226	chr16	88629571	88630000	+	0	NA	intron (NM_144604, intron 16 of 17)	intron (NM_144604, intron 16 of 17)	-8787	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
231821	chr9	132507521	132508080	+	0	NA	intron (NM_207417, intron 4 of 6)	intron (NM_207417, intron 4 of 6)	-74806	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
178268	chr4	143854701	143854900	+	0	NA	Intergenic	LTR36|LTR|ERV1	-25452	NR_134680	105377458		NR_134680		LOC105377458	-	uncharacterized LOC105377458	ncRNA
185192	chr5	119382501	119382900	+	0	NA	intron (NM_014350, intron 1 of 1)	MIR|SINE|MIR	26681	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
21994	chr1	209758501	209759950	+	0	NA	intron (NM_025228, intron 2 of 16)	intron (NM_025228, intron 2 of 16)	727	NM_001320143	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
27847	chr10	39607651	39607760	+	0	NA	Intergenic	L1HS|LINE|L1	911109	NR_045000	399746		NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
219848	chr8	81895971	81896130	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-53764	NM_022133	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
55214	chr12	101797071	101797430	+	0	NA	intron (NM_024312, intron 1 of 20)	intron (NM_024312, intron 1 of 20)	33709	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
211873	chr7	111073951	111074400	+	0	NA	intron (NM_032549, intron 3 of 5)	MIR3|SINE|MIR	-16831	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
233590	chrX	315351	316680	+	0	NA	intron (NM_012227, intron 2 of 9)	intron (NM_012227, intron 2 of 9)	2804	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
228390	chr9	99127101	99127300	+	0	NA	intron (NM_001130916, intron 1 of 7)	MER77|LTR|ERVL	22087	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
41058	chr11	65488351	65488850	+	0	NA	Intergenic	Intergenic	-9138	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
220018	chr8	90641851	90642150	+	0	NA	intron (NM_001008495, intron 1 of 2)	intron (NM_001008495, intron 1 of 2)	3905	NM_001146273	169200		NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
40756	chr11	64841871	64842630	+	0	NA	intron (NM_017525, intron 1 of 36)	intron (NM_017525, intron 1 of 36)	2403	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
61894	chr13	77317271	77317580	+	0	NA	intron (NM_015057, intron 1 of 82)	ERV3-16A3_I-int|LTR|ERVL	9669	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
185227	chr5	122778571	122778730	+	0	NA	intron (NM_001278199, intron 1 of 14)	AluSx3|SINE|Alu	3570	NM_003100	6643		NM_003100	ENSG00000205302	SNX2	TRG-9	sorting nexin 2	protein-coding
120970	chr19	45713021	45713280	+	0	NA	exon (NM_001080469, exon 2 of 2)	exon (NM_001080469, exon 2 of 2)	2128	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
67947	chr14	74789521	74789780	+	0	NA	intron (NM_019589, intron 4 of 20)	AluJo|SINE|Alu	26334	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
151357	chr21	45742351	45742450	+	0	NA	intron (NM_001382287, intron 2 of 15)	intron (NM_001382287, intron 2 of 15)	-5614	NM_001348243	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
5264	chr1	25035901	25036680	+	0	NA	Intergenic	Intergenic	12787	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
28441	chr10	48655821	48657050	+	0	NA	promoter-TSS (NR_045675)	promoter-TSS (NR_045675)	-170	NR_045675	58504		NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
185343	chr5	126868751	126869380	+	0	NA	3' UTR (NM_178450, exon 5 of 5)	3' UTR (NM_178450, exon 5 of 5)	91929	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
114129	chr19	11203601	11204280	+	0	NA	intron (NR_134909, intron 1 of 2)	intron (NR_134909, intron 1 of 2)	312	NR_134909	105372273		NR_134909	ENSG00000267082	DOCK6-AS1	-	DOCK6 antisense RNA 1	ncRNA
87408	chr16	70576721	70577580	+	0	NA	3' UTR (NM_012426, exon 26 of 26)	3' UTR (NM_012426, exon 26 of 26)	-2745	NM_152456	146433		NM_152456	ENSG00000157368	IL34	C16orf77|IL-34	interleukin 34	protein-coding
177417	chr4	112318721	112318980	+	0	NA	intron (NM_001253884, intron 2 of 14)	L2c|LINE|L2	21481	NM_001102406	80216		NM_025144	ENSG00000073331	ALPK1	8430410J10Rik|LAK|ROSAH	alpha kinase 1	protein-coding
192405	chr6	24841651	24841950	+	0	NA	intron (NM_001286447, intron 13 of 13)	AluJb|SINE|Alu	35470	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
36111	chr11	3086971	3087330	+	0	NA	TTS (NM_001144063)	TTS (NM_001144063)	-29727	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
87160	chr16	69321471	69321830	+	0	NA	intron (NM_013245, intron 9 of 10)	L2a|LINE|L2	8938	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
179619	chr4	186068051	186068380	+	0	NA	promoter-TSS (NM_003265)	promoter-TSS (NM_003265)	-941	NM_003265	7098		NM_003265	ENSG00000164342	TLR3	CD283|IIAE2|IMD83	toll like receptor 3	protein-coding
134432	chr2	143132351	143132730	+	0	NA	intron (NM_018460, intron 1 of 13)	MLT1K|LTR|ERVL-MaLR	3121	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
178296	chr4	145130271	145130630	+	0	NA	TTS (NM_001040876)	TTS (NM_001040876)	-31909	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
165511	chr3	100314271	100314630	+	0	NA	intron (NM_001199198, intron 15 of 18)	intron (NM_001199198, intron 15 of 18)	-20307	NM_020202	56954		NM_020202	ENSG00000114021	NIT2	HEL-S-8a	nitrilase family member 2	protein-coding
36818	chr11	9702101	9702680	+	0	NA	intron (NM_001297714, intron 2 of 10)	intron (NM_001297714, intron 2 of 10)	38313	NM_015055	23075		NM_015055	ENSG00000133789	SWAP70	HSPC321|SWAP-70	switching B cell complex subunit SWAP70	protein-coding
32783	chr10	104396401	104396800	+	0	NA	intron (NM_001008723, intron 11 of 17)	intron (NM_001008723, intron 11 of 17)	42767	NM_001008723	159686		NM_001008723	ENSG00000120051	CFAP58	C10orf80|CCDC147|SPGF49|bA127L20.4|bA127L20.5|bA554P13.1	cilia and flagella associated protein 58	protein-coding
205154	chr7	7201171	7202650	+	0	NA	intron (NM_020156, intron 1 of 3)	L1PA5|LINE|L1	19366	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
10355	chr1	64933171	64934250	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	32839	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
165836	chr3	105844071	105844830	+	0	NA	intron (NR_135807, intron 3 of 20)	intron (NR_135807, intron 3 of 20)	23141	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
166364	chr3	113003851	113004250	+	0	NA	non-coding (NR_134969, exon 6 of 6)	non-coding (NR_134969, exon 6 of 6)	13066	NM_014170	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
14681	chr1	145847401	145847650	+	0	NA	TTS (NM_006099)	TTS (NM_006099)	1895	NM_001012758	200035		NM_001012758	ENSG00000186364	NUDT17	-	nudix hydrolase 17	protein-coding
87195	chr16	69410921	69411380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13469	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
138076	chr2	201901801	201902000	+	0	NA	Intergenic	Intergenic	95321	NM_001261435	65061		NM_139158	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin dependent kinase 15	protein-coding
146918	chr20	51609471	51609930	+	0	NA	intron (NM_006045, intron 24 of 27)	intron (NM_006045, intron 24 of 27)	-46861	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
72940	chr15	40443171	40444300	+	0	NA	intron (NR_125372, intron 1 of 4)	intron (NR_125372, intron 1 of 4)	2782	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
169389	chr3	160543201	160543400	+	0	NA	intron (NM_002268, intron 1 of 16)	MIR3|SINE|MIR	22271	NM_002268	3840		NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
71025	chr14	104771851	104772350	+	0	NA	intron (NM_001382433, intron 14 of 15)	intron (NM_001382433, intron 14 of 15)	18953	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
81617	chr16	10765471	10766380	+	0	NA	TTS (NM_001079512)	TTS (NM_001079512)	22056	NM_001323597	4682		NM_002484	ENSG00000103274	NUBP1	CIAO5|NBP|NBP1|NBP35	NUBP iron-sulfur cluster assembly factor 1, cytosolic	protein-coding
93424	chr17	18433301	18433850	+	0	NA	Intergenic	Intergenic	-6333	NR_073414	729252		NR_073414		KRT16P1	KRT14P|KRT16P	keratin 16 pseudogene 1	pseudo
57816	chr12	123149421	123149680	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	1540	NM_020845	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
165497	chr3	100060721	100061200	+	0	NA	intron (NM_182909, intron 1 of 5)	intron (NM_182909, intron 1 of 5)	53553	NM_001042459	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
54340	chr12	89673851	89673950	+	0	NA	intron (NM_001366524, intron 1 of 21)	intron (NM_001366524, intron 1 of 21)	34938	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
86830	chr16	67888371	67888530	+	0	NA	intron (NM_001348682, intron 2 of 2)	intron (NM_001348682, intron 2 of 2)	3565	NM_198443	123904		NM_198443	ENSG00000188038	NRN1L	MRCC2446|UNQ2446|cpg15-2	neuritin 1 like	protein-coding
226505	chr9	71792921	71793180	+	0	NA	Intergenic	AluSq2|SINE|Alu	-24537	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
191222	chr6	5695221	5695680	+	0	NA	promoter-TSS (NR_110842)	promoter-TSS (NR_110842)	-178	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
145175	chr20	38862821	38863800	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	57613	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
152248	chr22	20210821	20211280	+	0	NA	Intergenic	Intergenic	4718	NR_026919	150197		NM_152508	ENSG00000236499	LINC00896	-	long intergenic non-protein coding RNA 896	ncRNA
32128	chr10	101234151	101234400	+	0	NA	intron (NR_029380, intron 2 of 2)	intron (NR_029380, intron 2 of 2)	4681	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
95945	chr17	38968801	38969200	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1597	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
179787	chr5	346151	346650	+	0	NA	intron (NR_165159, intron 4 of 13)	intron (NR_165159, intron 4 of 13)	23790	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
19310	chr1	173202221	173202750	+	0	NA	intron (NM_003326, intron 1 of 2)	intron (NM_003326, intron 1 of 2)	3047	NM_001297562	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
199233	chr6	111821721	111821980	+	0	NA	intron (NM_002037, intron 2 of 13)	L1PA5|LINE|L1	51221	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
162899	chr3	49397471	49398030	+	0	NA	intron (NM_001313943, intron 1 of 5)	L2|LINE|L2	14226	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
198923	chr6	110255451	110255550	+	0	NA	intron (NM_001123364, intron 4 of 4)	intron (NM_001123364, intron 4 of 4)	74558	NM_001354595	728464		NM_001123364	ENSG00000053328	METTL24	C6orf186	methyltransferase like 24	protein-coding
130720	chr2	86744901	86745100	+	0	NA	intron (NM_022780, intron 2 of 8)	intron (NM_022780, intron 2 of 8)	-23878	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
32821	chr10	109945701	109946300	+	0	NA	non-coding (NR_038943, exon 5 of 5)	non-coding (NR_038943, exon 5 of 5)	-22447	NM_001167604	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
129598	chr2	70090521	70090930	+	0	NA	Intergenic	Intergenic	3248	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
203403	chr7	30651	31540	+	0	NA	Intergenic	CpG	118343	NR_134325	102723672		NR_134325		LINC03015	-	long intergenic non-protein coding RNA 3015	ncRNA
55722	chr12	108300821	108301330	+	0	NA	intron (NM_001142344, intron 1 of 2)	AluSc8|SINE|Alu	19587	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
177591	chr4	120741851	120741950	+	0	NA	intron (NM_001300824, intron 12 of 13)	L1PA3|LINE|L1	180826	NM_001379106	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
229291	chr9	120791471	120792150	+	0	NA	intron (NM_001375888, intron 2 of 7)	intron (NM_001375888, intron 2 of 7)	1606	NM_001375890	26190		NM_012164	ENSG00000119402	FBXW2	FBW2|Fwd2|Md6	F-box and WD repeat domain containing 2	protein-coding
194710	chr6	33724371	33724730	+	0	NA	intron (NM_054111, intron 5 of 5)	intron (NM_054111, intron 5 of 5)	-12850	NM_032340	84300		NM_032340	ENSG00000137288	UQCC2	C6orf125|C6orf126|Cbp6|M19|MC3DN7|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
130053	chr2	74441671	74442680	+	0	NA	promoter-TSS (NM_001015055)	promoter-TSS (NM_001015055)	-238	NM_001015055	6242		NM_033046	ENSG00000114993	RTKN	RTKN-1	rhotekin	protein-coding
76533	chr15	75129871	75130300	+	0	NA	Intergenic	Intergenic	-71797	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
105026	chr17	82050021	82050500	+	0	NA	intron (NM_002917, intron 4 of 7)	intron (NM_002917, intron 4 of 7)	1551	NM_002917	5986		NM_002917	ENSG00000169733	RFNG	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
86908	chr16	68067801	68068580	+	0	NA	intron (NM_001271763, intron 8 of 14)	intron (NM_001271763, intron 8 of 14)	-17180	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
66447	chr14	61541901	61542100	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	28194	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
203265	chr6	169699551	169699850	+	0	NA	intron (NR_146876, intron 1 of 15)	MLT1D-int|LTR|ERVL-MaLR	2329	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
225188	chr9	34044051	34044500	+	0	NA	intron (NM_001370059, intron 1 of 28)	AluYk3|SINE|Alu	4612	NM_001370064	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
24111	chr1	235593821	235594080	+	0	NA	intron (NM_004485, intron 1 of 2)	LTR12C|LTR|ERV1	55834	NM_001098722	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
237078	chrX	103682901	103684150	+	0	NA	intron (NM_001142419, intron 2 of 3)	intron (NM_001142419, intron 2 of 3)	3174	NM_012286	9643		NM_012286	ENSG00000123562	MORF4L2	MORFL2|MRGX	mortality factor 4 like 2	protein-coding
228103	chr9	96478671	96479050	+	0	NA	intron (NM_014282, intron 5 of 7)	AluJr|SINE|Alu	28691	NM_014282	22927		NM_014282	ENSG00000130956	HABP4	IHABP-4|IHABP4|Ki-1/57|SERBP1L	hyaluronan binding protein 4	protein-coding
77046	chr15	78810421	78810850	+	0	NA	intron (NM_014272, intron 1 of 23)	CpG	829	NM_014272	11173		NM_014272	ENSG00000136378	ADAMTS7	ADAM-TS 7|ADAM-TS7|ADAMTS-7	ADAM metallopeptidase with thrombospondin type 1 motif 7	protein-coding
4472	chr1	21397771	21398380	+	0	NA	Intergenic	Intergenic	-42062	NM_001377492	84224		NM_032264	ENSG00000142794	NBPF3	AE2	NBPF member 3	protein-coding
168009	chr3	136858351	136858450	+	0	NA	intron (NR_110177, intron 1 of 2)	AluJr|SINE|Alu	3663	NR_110177	101927597		NR_110175		NCK1-DT	NCK1-AS1|SLC35G2-AS1	NCK1 divergent transcript	ncRNA
137910	chr2	200887451	200888200	+	0	NA	intron (NM_032472, intron 1 of 6)	AluSx1|SINE|Alu	1252	NM_130906	53938		NM_032472	ENSG00000240344	PPIL3	CYPJ	peptidylprolyl isomerase like 3	protein-coding
132355	chr2	105749321	105749580	+	0	NA	intron (NM_001004722, intron 1 of 3)	MIRc|SINE|MIR	4387	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
52531	chr12	56114321	56114980	+	0	NA	TTS (NM_006191)	TTS (NM_006191)	-1983	NM_001035267	6171		NM_021104	ENSG00000229117	RPL41	L41|eL41	ribosomal protein L41	protein-coding
97700	chr17	44320871	44321630	+	0	NA	non-coding (NR_159401, exon 7 of 11)	non-coding (NR_159401, exon 7 of 11)	3573	NR_159404	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
75366	chr15	65609301	65609780	+	0	NA	intron (NR_045901, intron 1 of 10)	L2a|LINE|L2	1591	NM_001207058	81556		NM_030800	ENSG00000138614	INTS14	C15orf44|VWA9	integrator complex subunit 14	protein-coding
223828	chr8	144905051	144905350	+	0	NA	Intergenic	Intergenic	-3023	NM_001363105	58500		NM_021061	ENSG00000196150	ZNF250	ZFP647|ZNF647	zinc finger protein 250	protein-coding
217492	chr8	29036371	29036800	+	0	NA	intron (NM_001324391, intron 6 of 10)	intron (NM_001324391, intron 6 of 10)	145271	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
22392	chr1	219174721	219175450	+	0	NA	intron (NM_001300772, intron 1 of 4)	intron (NM_001300772, intron 1 of 4)	116	NM_001300772	127018		NM_138794	ENSG00000143353	LYPLAL1	Q96AV0	lysophospholipase like 1	protein-coding
167666	chr3	129942201	129942500	+	0	NA	Intergenic	Intergenic	-32370	NM_007117	7200		NM_007117	ENSG00000170893	TRH	Pro-TRH|TRF	thyrotropin releasing hormone	protein-coding
73752	chr15	45404571	45404730	+	0	NA	intron (NM_001323640, intron 1 of 4)	AluSq|SINE|Alu	2314	NR_136648	79029		NM_024063	ENSG00000171763	AFG2B	DFNB119|NEDHLS|SPATA5L1	AFG2 AAA ATPase homolog B	protein-coding
31162	chr10	90911521	90911860	+	0	NA	TTS (NM_014391)	TTS (NM_014391)	9397	NM_014391	27063		NM_014391	ENSG00000148677	ANKRD1	ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2	ankyrin repeat domain 1	protein-coding
32566	chr10	103416601	103417170	+	0	NA	intron (NM_014976, intron 13 of 35)	intron (NM_014976, intron 13 of 35)	20259	NM_014976	22984		NM_014976	ENSG00000148843	PDCD11	ALG-4|ALG4|NFBP|RRP5	programmed cell death 11	protein-coding
164619	chr3	66382501	66382700	+	0	NA	intron (NM_001377344, intron 14 of 17)	intron (NM_001377344, intron 14 of 17)	23167	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
23668	chr1	231334171	231334530	+	0	NA	3' UTR (NM_175876, exon 1 of 1)	3' UTR (NM_175876, exon 1 of 1)	3502	NM_175876	149371		NM_175876	ENSG00000116903	EXOC8	EXO84|Exo84p|NEDMISB|SEC84	exocyst complex component 8	protein-coding
24818	chr10	281971	282130	+	0	NA	intron (NM_014974, intron 35 of 36)	5S|rRNA|rRNA	102056	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
10671	chr1	71053621	71054050	+	0	NA	intron (NR_038420, intron 2 of 2)	intron (NR_038420, intron 2 of 2)	-6019	NM_001126044	5733		NM_000957	ENSG00000050628	PTGER3	EP3|EP3-I|EP3-II|EP3-III|EP3-IV|EP3-VI|EP3e|PGE2-R|lnc003875	prostaglandin E receptor 3	protein-coding
164787	chr3	69249951	69250280	+	0	NA	intron (NM_015123, intron 5 of 22)	intron (NM_015123, intron 5 of 22)	-127520	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
189048	chr5	169834021	169834500	+	0	NA	intron (NR_156756, intron 26 of 52)	intron (NR_156756, intron 26 of 52)	146235	NM_001346304	100131897		NM_001129891	ENSG00000204767	INSYN2B	C5orf57|FAM196B	inhibitory synaptic factor family member 2B	protein-coding
212447	chr7	128407871	128408180	+	0	NA	intron (NM_183243, intron 1 of 14)	intron (NM_183243, intron 1 of 14)	1957	NM_001142576	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
23377	chr1	228172251	228172580	+	0	NA	intron (NM_001010867, intron 1 of 2)	L1MC4|LINE|L1	-2155	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
181073	chr5	36723851	36724180	+	0	NA	Intergenic	Intergenic	117409	NM_004172	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
139820	chr2	230409201	230409900	+	0	NA	Intergenic	Intergenic	-6606	NM_001206703	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
185156	chr5	119328601	119329480	+	0	NA	intron (NM_001286815, intron 2 of 2)	intron (NM_001286815, intron 2 of 2)	-4135	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
174389	chr4	39043921	39046550	+	0	NA	intron (NM_001171654, intron 1 of 10)	CpG	404	NM_001007075	51088		NM_015990	ENSG00000109790	KLHL5	-	kelch like family member 5	protein-coding
102178	chr17	75145121	75145380	+	0	NA	intron (NM_001002032, intron 3 of 3)	intron (NM_001002032, intron 3 of 3)	8043	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
194567	chr6	33408151	33408450	+	0	NA	intron (NM_002263, intron 10 of 10).3	L1MC5a|LINE|L1	-2714	NR_027692	5252		NM_002636	ENSG00000112511	PHF1	MTF2L2|PCL1|PHF2|TDRD19C|hPHF1	PHD finger protein 1	protein-coding
170887	chr3	193592451	193594100	+	0	NA	promoter-TSS (NM_001354663)	promoter-TSS (NM_001354663)	67	NM_001354664	4976		NM_015560	ENSG00000198836	OPA1	BERHS|MGM1|MTDPS14|NPG|NTG|largeG	OPA1 mitochondrial dynamin like GTPase	protein-coding
106625	chr18	22385401	22386200	+	0	NA	Intergenic	Intergenic	32115	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
215849	chr8	7220271	7220630	+	0	NA	intron (NR_168401, intron 2 of 2)	intron (NR_168401, intron 2 of 2)	7738	NR_168401	101928095		NR_168401		LOC101928095	-	uncharacterized LOC101928095	ncRNA
92396	chr17	8300501	8301050	+	0	NA	Intergenic	Intergenic	-5375	NR_135483	399512		NM_201520	ENSG00000125434	SLC25A35	-	solute carrier family 25 member 35	protein-coding
192263	chr6	20365221	20365750	+	0	NA	Intergenic	MIR|SINE|MIR	-36394	NM_001949	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
65688	chr14	52729551	52730780	+	0	NA	promoter-TSS (NM_145251)	promoter-TSS (NM_145251)	-1	NM_001130701	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
220494	chr8	100540851	100541450	+	0	NA	intron (NM_001270377, intron 1 of 4)	intron (NM_001270377, intron 1 of 4)	18609	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
174083	chr4	27075751	27075850	+	0	NA	Intergenic	L1PA2|LINE|L1	-141679	NR_125921	101929199		NR_125921	ENSG00000249699	LINC02261	-	long intergenic non-protein coding RNA 2261	ncRNA
88534	chr16	85421871	85422600	+	0	NA	Intergenic	Intergenic	-115910	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
175485	chr4	73221771	73222150	+	0	NA	intron (NM_032217, intron 1 of 33)	intron (NM_032217, intron 1 of 33)	1097	NM_001286771	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
171603	chr3	197297351	197299480	+	0	NA	promoter-TSS (NM_001366210)	promoter-TSS (NM_001366210)	161	NM_001098424	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
181379	chr5	40653511	40654430	+	0	NA	Intergenic	L1PBb|LINE|L1	-25945	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
33232	chr10	114163971	114164130	+	0	NA	intron (NM_018017, intron 1 of 15)	intron (NM_018017, intron 1 of 15)	10129	NR_031747	100302224		NR_031747	ENSG00000284442	MIR2110	hsa-mir-2110|mir-2110	microRNA 2110	ncRNA
178252	chr4	143519251	143519550	+	0	NA	intron (NM_003601, intron 2 of 23)	intron (NM_003601, intron 2 of 23)	-4563	NR_104027	100128055		NR_104027	ENSG00000245112	SMARCA5-AS1	-	SMARCA5 antisense RNA 1	ncRNA
169795	chr3	174605651	174605750	+	0	NA	Intergenic	L1PA3|LINE|L1	-253634	NM_207015	254827		NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase like 2	protein-coding
90744	chr17	2035171	2035980	+	0	NA	intron (NM_001346576, intron 3 of 11)	intron (NM_001346576, intron 3 of 11)	5422	NM_001383	1801		NM_001383	ENSG00000108963	DPH1	DEDSSH|DPH2L|DPH2L1|OVCA1	diphthamide biosynthesis 1	protein-coding
45120	chr11	117173971	117174450	+	0	NA	intron (NR_110269, intron 6 of 7)	AluSq2|SINE|Alu	-4533	NM_001040455	51092		NM_015996	ENSG00000149577	SIDT2	CGI-40	SID1 transmembrane family member 2	protein-coding
170506	chr3	186259451	186259860	+	0	NA	intron (NM_001080744, intron 15 of 23)	intron (NM_001080744, intron 15 of 23)	102579	NM_001080745	1608		NM_001346	ENSG00000058866	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase gamma	protein-coding
92851	chr17	16287401	16288300	+	0	NA	intron (NM_004278, intron 2 of 6)	intron (NM_004278, intron 2 of 6)	5836	NR_031698	100302124		NR_031698	ENSG00000221355	MIR1288	MIRN1288|hsa-mir-1288	microRNA 1288	ncRNA
93331	chr17	18192971	18193130	+	0	NA	intron (NM_017758, intron 1 of 3)	AluSx1|SINE|Alu	9222	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
60018	chr13	32535521	32535780	+	0	NA	intron (NM_001278432, intron 2 of 9)	FLAM_C|SINE|Alu	3145	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
101882	chr17	74325301	74326680	+	0	NA	promoter-TSS (NM_153209)	promoter-TSS (NM_153209)	-236	NM_153209	124602		NM_153209	ENSG00000196169	KIF19	KIF19A	kinesin family member 19	protein-coding
61716	chr13	74112201	74112600	+	0	NA	intron (NM_007249, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	21529	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
111905	chr19	4684201	4684400	+	0	NA	non-coding (NR_164163, exon 3 of 3)	non-coding (NR_164163, exon 3 of 3)	5018	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
122536	chr19	49635621	49636230	+	0	NA	intron (NM_006270, intron 4 of 5)	intron (NM_006270, intron 4 of 5)	4218	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
193057	chr6	28657851	28658630	+	0	NA	Intergenic	tRNA-Ala-GCY_|tRNA|tRNA	-3765	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
33454	chr10	119043401	119043730	+	0	NA	intron (NM_003750, intron 18 of 21)	AluJb|SINE|Alu	13851	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
537	chr1	1233301	1233750	+	0	NA	3' UTR (NM_080605, exon 1 of 1)	3' UTR (NM_080605, exon 1 of 1)	1288	NM_080605	126792		NM_080605	ENSG00000176022	B3GALT6	ALGAZ|EDSP2|EDSSPD2|SEMDJL1|beta3GalT6	beta-1,3-galactosyltransferase 6	protein-coding
175618	chr4	76067671	76067900	+	0	NA	intron (NM_001377181, intron 1 of 5)	MamGypLTR2c|LTR|Gypsy	-6924	NM_001377176	419		NM_001179	ENSG00000156219	ART3	ARTC3	ADP-ribosyltransferase 3 (inactive)	protein-coding
10520	chr1	66935451	66935950	+	0	NA	intron (NM_001077704, intron 1 of 13)	L1ME4a|LINE|L1	5444	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
171953	chr4	893051	893580	+	0	NA	intron (NM_001318134, intron 6 of 24)	intron (NM_001318134, intron 6 of 24)	39001	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
51177	chr12	50219571	50219830	+	0	NA	intron (NM_001113547, intron 1 of 7)	AluJo|SINE|Alu	2958	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
214470	chr7	150367101	150367330	+	0	NA	promoter-TSS (NM_001362746)	promoter-TSS (NM_001362746)	-881	NM_001362746	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
92158	chr17	7683671	7684280	+	0	NA	intron (NM_000546, intron 1 of 10)	AluSz6|SINE|Alu	-2096	NM_001143990	55135		NM_018081	ENSG00000141499	WRAP53	DKCB3|TCAB1|WDR79	WD repeat containing antisense to TP53	protein-coding
108812	chr18	78640351	78640880	+	0	NA	Intergenic	Intergenic	-339660	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
122811	chr19	50381851	50382680	+	0	NA	intron (NM_001256647, intron 8 of 8)	intron (NM_001256647, intron 8 of 8)	-2058	NM_001256849	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
111655	chr19	4216001	4216200	+	0	NA	intron (NM_133475, intron 16 of 21)	intron (NM_133475, intron 16 of 21)	-13423	NM_005755	10148		NM_005755	ENSG00000105246	EBI3	IL-27B|IL27B|IL35B	Epstein-Barr virus induced 3	protein-coding
118458	chr19	35872801	35873950	+	0	NA	intron (NM_001024807, intron 7 of 16)	AluY|SINE|Alu	4801	NM_001024807	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
168303	chr3	141543351	141544100	+	0	NA	intron (NM_006506, intron 5 of 23)	L1MDa|LINE|L1	56698	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
115824	chr19	16473901	16474100	+	0	NA	Intergenic	Intergenic	-1988	NR_047665	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
237934	chrX	132218001	132218680	+	0	NA	promoter-TSS (NR_110410)	promoter-TSS (NR_110410)	-167	NR_110410	101928578		NR_110410	ENSG00000232160	RAP2C-AS1	-	RAP2C antisense RNA 1	ncRNA
62323	chr13	99055101	99055950	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	31169	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
148621	chr21	5553271	5554050	+	0	NA	promoter-TSS (NM_001322047)	promoter-TSS (NM_001322047)	23	NM_001322044	102724219		NM_001322044		LINC03104	-	long intergenic non-protein coding RNA 3104	ncRNA
121864	chr19	48266801	48267600	+	0	NA	Intergenic	Intergenic	-2881	NM_153608	163071		NM_153608	ENSG00000178150	ZNF114	-	zinc finger protein 114	protein-coding
136121	chr2	173950321	173950580	+	0	NA	intron (NM_001172712, intron 4 of 6)	AluJr4|SINE|Alu	13430	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
165388	chr3	94071871	94072200	+	0	NA	intron (NM_022072, intron 2 of 5)	intron (NM_022072, intron 2 of 5)	8974	NM_022072	63899		NM_022072	ENSG00000178694	NSUN3	COXPD48|MST077|MSTP077	NOP2/Sun RNA methyltransferase 3	protein-coding
235246	chrX	41517771	41517930	+	0	NA	3' UTR (NM_003688, exon 27 of 27)	3' UTR (NM_003688, exon 27 of 27)	70390	NM_022567	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
30690	chr10	80524351	80524930	+	0	NA	Intergenic	Intergenic	11302	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
210748	chr7	100670901	100671530	+	0	NA	Intergenic	L1PA16|LINE|L1	-2525	NM_005273	2783		NM_005273	ENSG00000172354	GNB2	HG2C1|SSS4|SSS4; NEDHYDF	G protein subunit beta 2	protein-coding
171704	chr3	197809321	197809580	+	0	NA	intron (NM_001365715, intron 1 of 20)	L1MDa|LINE|L1	18196	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
116173	chr19	17417921	17418830	+	0	NA	intron (NM_001304547, intron 2 of 9)	intron (NM_001304547, intron 2 of 9)	-1672	NM_138401	93343		NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
3963	chr1	18651551	18652250	+	0	NA	intron (NM_001135254, intron 4 of 8)	intron (NM_001135254, intron 4 of 8)	21054	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
49864	chr12	36248871	36249030	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-2067824	NM_001308340	144245		NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10 alpha-1,2-glucosyltransferase B	protein-coding
130359	chr2	85023201	85023600	+	0	NA	intron (NM_020122, intron 1 of 6)	AluY|SINE|Alu	43947	NR_146453	100996478		NR_146453	ENSG00000260840	LINC01964	-	long intergenic non-protein coding RNA 1964	ncRNA
62475	chr13	99381801	99382030	+	0	NA	intron (NR_026644, intron 8 of 8)	L3|LINE|CR1	25784	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
44495	chr11	105559551	105559650	+	0	NA	Intergenic	AluY|SINE|Alu	-50473	NM_001077243	2893		NM_000829	ENSG00000152578	GRIA4	GLUR4|GLUR4C|GLURD|GluA4|GluA4-ATD|NEDSGA	glutamate ionotropic receptor AMPA type subunit 4	protein-coding
200357	chr6	134111051	134111500	+	0	NA	Intergenic	Intergenic	6405	NR_037938	387065		NR_037938		HMGA1P7	HMGA1L7	high mobility group AT-hook 1 pseudogene 7	pseudo
44801	chr11	113772371	113772530	+	0	NA	intron (NM_004724, intron 1 of 15)	intron (NM_004724, intron 1 of 15)	1242	NM_004724	9183		NM_004724	ENSG00000086827	ZW10	HZW10|KNTC1AP	zw10 kinetochore protein	protein-coding
64918	chr14	35418771	35419630	+	0	NA	Intergenic	L2a|LINE|L2	-14451	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
53596	chr12	68018371	68018530	+	0	NA	intron (NR_104124, intron 4 of 4)	intron (NR_104124, intron 4 of 4)	29005	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
57794	chr12	123078321	123078800	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-2824	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
127360	chr2	39215771	39215930	+	0	NA	intron (NM_001009565, intron 2 of 7)	LTR67B|LTR|ERVL	13738	NM_001346911	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
134857	chr2	148673951	148674650	+	0	NA	intron (NM_015630, intron 1 of 13)	intron (NM_015630, intron 1 of 13)	29549	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
204859	chr7	5827501	5828530	+	0	NA	intron (NR_023382, intron 1 of 6)	L1MC4|LINE|L1	4855	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
30665	chr10	80489451	80490100	+	0	NA	intron (NM_001128309, intron 2 of 5)	L2b|LINE|L2	21534	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
50227	chr12	46231021	46231500	+	0	NA	intron (NM_001278387, intron 4 of 17)	L1PB4|LINE|L1	35256	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
107232	chr18	36828221	36829850	+	0	NA	promoter-TSS (NM_001353918)	promoter-TSS (NM_001353918)	-33	NM_015476	25941		NM_015476	ENSG00000134779	TPGS2	C18orf10|HMFN0601|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
125599	chr2	17749771	17750550	+	0	NA	intron (NM_024624, intron 1 of 26)	intron (NM_024624, intron 1 of 26)	3650	NM_001142286	79677		NM_024624	ENSG00000163029	SMC6	SMC-6|SMC6L1|hSMC6	structural maintenance of chromosomes 6	protein-coding
89923	chr16	89719101	89719580	+	0	NA	intron (NM_004913, intron 1 of 14)	intron (NM_004913, intron 1 of 14)	-1028	NR_110128	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
21558	chr1	206288201	206288600	+	0	NA	intron (NM_001377446, intron 2 of 21)	HAL1b|LINE|L1	-82627	NM_001385243	729533		NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
44108	chr11	96012071	96012830	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-88343	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
158620	chr3	4898621	4899080	+	0	NA	non-coding (NR_125914, exon 3 of 3)	non-coding (NR_125914, exon 3 of 3)	7651	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
89892	chr16	89683171	89683530	+	0	NA	Intergenic	AluY|SINE|Alu	-3339	NR_027703	8558		NM_003674	ENSG00000185324	CDK10	ALSAS|PISSLRE	cyclin dependent kinase 10	protein-coding
17282	chr1	156428071	156428450	+	0	NA	intron (NR_135260, intron 1 of 3)	intron (NR_135260, intron 1 of 3)	1166	NR_168071	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
98767	chr17	48115871	48116030	+	0	NA	intron (NM_152244, intron 5 of 7)	(T)n|Simple_repeat|Simple_repeat	8184	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
44460	chr11	104959901	104960300	+	0	NA	intron (NM_033306, intron 1 of 9)	intron (NM_033306, intron 1 of 9)	8474	NM_001225	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
48231	chr12	8234721	8234980	+	0	NA	promoter-TSS (NR_120455)	promoter-TSS (NR_120455)	-565	NR_120455	101927905		NR_120454	ENSG00000215241	LINC02449	-	long intergenic non-protein coding RNA 2449	ncRNA
113184	chr19	8407301	8407500	+	0	NA	Intergenic	AluJb|SINE|Alu	-5903	NM_001005415	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
167698	chr3	130745201	130745400	+	0	NA	intron (NM_014602, intron 1 of 19)	A-rich|Low_complexity|Low_complexity	1529	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
172928	chr4	3510171	3510430	+	0	NA	non-coding (NR_110005, exon 8 of 8)	non-coding (NR_110005, exon 8 of 8)	21849	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
205938	chr7	25954051	25954480	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-4279	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
20583	chr1	198747201	198748030	+	0	NA	intron (NM_002838, intron 26 of 32)	intron (NM_002838, intron 26 of 32)	108575	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
83834	chr16	28861571	28861730	+	0	NA	5' UTR (NM_001308293, exon 2 of 11)	5' UTR (NM_001308293, exon 2 of 11)	-2107	NM_001145797	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
82354	chr16	15964251	15964350	+	0	NA	intron (NM_004996, intron 1 of 30)	THE1C-int|LTR|ERVL-MaLR	14684	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
200851	chr6	138428951	138429350	+	0	NA	intron (NM_020464, intron 6 of 6)	intron (NM_020464, intron 6 of 6)	6144	NR_036099	100423001		NR_036099	ENSG00000266555	MIR3145	mir-3145	microRNA 3145	ncRNA
96420	chr17	40173851	40174300	+	0	NA	Intergenic	AluJb|SINE|Alu	-2935	NM_001303534	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
6844	chr1	31046771	31047130	+	0	NA	intron (NM_014676, intron 2 of 21)	AluSg|SINE|Alu	18767	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
215876	chr8	7679971	7680200	+	0	NA	Intergenic	Intergenic	-89499	NR_046351								
88115	chr16	81565471	81565630	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	31648	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
158174	chr22	50218151	50218250	+	0	NA	TTS (NM_031454)	TTS (NM_031454)	17189	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
13243	chr1	112699001	112699400	+	0	NA	intron (NM_001286072, intron 18 of 21)	MER5B|DNA|hAT-Charlie	7856	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
92026	chr17	7475671	7476880	+	0	NA	intron (NM_020899, intron 1 of 3)	L2b|LINE|L2	3356	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
134351	chr2	136128251	136128680	+	0	NA	Intergenic	Intergenic	-10316	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
43658	chr11	85737751	85738300	+	0	NA	intron (NM_032943, intron 4 of 18)	intron (NM_032943, intron 4 of 18)	-18675	NM_001289609	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
63749	chr14	21234521	21234930	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	-27825	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
34502	chr10	132554401	132555600	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	17213	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
69954	chr14	99682101	99683300	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-1598	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
139571	chr2	224941921	224942500	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	4839	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
51379	chr12	51851671	51852230	+	0	NA	intron (NR_135803, intron 2 of 2)	intron (NR_135803, intron 2 of 2)	-3232	NM_001384995	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
55371	chr12	104293821	104294930	+	0	NA	intron (NM_001261446, intron 2 of 13)	LTR13|LTR|ERVK	7343	NM_182743	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
197033	chr6	53341371	53341600	+	0	NA	intron (NM_001242830, intron 1 of 6)	MIR|SINE|MIR	-3868	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
55902	chr12	109727871	109728030	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	14125	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
103709	chr17	78826521	78827130	+	0	NA	intron (NR_169583, intron 6 of 22)	intron (NR_169583, intron 6 of 22)	13989	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
58896	chr13	19587751	19587930	+	0	NA	intron (NR_046988, intron 1 of 1)	intron (NR_046988, intron 1 of 1)	722	NR_046988	100874136		NR_046988	ENSG00000225316	TPTE2-AS1	LINC00350	TPTE2 antisense RNA 1	ncRNA
233707	chrX	1249301	1249980	+	0	NA	Intergenic	Intergenic	-19174	NM_172247	1438		NM_006140	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMCSFR-alpha|GMR|GMR-alpha|SMDP4|alphaGMR	colony stimulating factor 2 receptor subunit alpha	protein-coding
116720	chr19	18453601	18453880	+	0	NA	intron (NM_006532, intron 6 of 11)	AluJo|SINE|Alu	-15607	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
217985	chr8	38375001	38375830	+	0	NA	intron (NM_017778, intron 1 of 9)	intron (NM_017778, intron 1 of 9)	6856	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
200965	chr6	139250521	139251300	+	0	NA	intron (NM_153235, intron 7 of 9)	intron (NM_153235, intron 7 of 9)	41088	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
119523	chr19	40565271	40565750	+	0	NA	exon (NM_020971, exon 28 of 36)	exon (NM_020971, exon 28 of 36)	-11363	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
207802	chr7	50281501	50283080	+	0	NA	Intergenic	Intergenic	-21774	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
150344	chr21	42145301	42146030	+	0	NA	Intergenic	Intergenic	-37131	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
22022	chr1	210252251	210252350	+	0	NA	Intergenic	Intergenic	15014	NM_001375428	56256		NM_019605	ENSG00000082497	SERTAD4	DJ667H12.2	SERTA domain containing 4	protein-coding
133135	chr2	112667471	112667780	+	0	NA	Intergenic	AluSg|SINE|Alu	21686	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
39294	chr11	58577121	58578500	+	0	NA	intron (NM_001143995, intron 1 of 8)	intron (NM_001143995, intron 1 of 8)	429	NM_001143995	9404		NM_004811	ENSG00000110031	LPXN	LDPL	leupaxin	protein-coding
122317	chr19	49130251	49131250	+	0	NA	intron (NR_103842, intron 7 of 28)	MIRb|SINE|MIR	11206	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
111532	chr19	4022771	4023130	+	0	NA	intron (NM_015897, intron 2 of 10)	AluSp|SINE|Alu	15214	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
36573	chr11	6656951	6657650	+	0	NA	Intergenic	Kanga2_a|DNA|TcMar-Tc2	-1491	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
1581	chr1	3595101	3595830	+	0	NA	intron (NM_001409, intron 2 of 36)	CpG-285	16043	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
73625	chr15	44597171	44597330	+	0	NA	intron (NM_025137, intron 23 of 39)	AluSp|SINE|Alu	60103	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
83017	chr16	22262051	22262950	+	0	NA	intron (NM_013302, intron 11 of 17).2	AluSx4|SINE|Alu	-34875	NM_001258035	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
183399	chr5	77806171	77806780	+	0	NA	Intergenic	L1MA4A|LINE|L1	-30114	NM_001297740	6902		NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
127736	chr2	43567571	43567730	+	0	NA	intron (NR_144316, intron 14 of 36)	intron (NR_144316, intron 14 of 36)	28324	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
80102	chr16	2016451	2017130	+	0	NA	Intergenic	Intergenic	-2995	NM_001099456	283869		NM_001099456	ENSG00000183971	NPW	L8|L8C|PPL8|PPNPW	neuropeptide W	protein-coding
237162	chrX	107576901	107577100	+	0	NA	intron (NM_032428, intron 14 of 15)	intron (NM_032428, intron 14 of 15)	-31179	NR_046750	100874122		NR_046750	ENSG00000227610	FRMPD3-AS1	-	FRMPD3 antisense RNA 1	ncRNA
2050	chr1	7827201	7827830	+	0	NA	exon (NM_001289861, exon 18 of 23)	exon (NM_001289861, exon 18 of 23)	25550	NM_006786	10911		NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
59970	chr13	32019601	32019850	+	0	NA	Intergenic	Intergenic	11914	NR_103839	100507099		NR_103839		FRY-AS1	-	FRY antisense RNA 1	ncRNA
101750	chr17	72079251	72079350	+	0	NA	TTS (NR_103737)	TTS (NR_103737)	6967	NR_110827	101928205		NR_110827	ENSG00000226101	LINC02097	-	long intergenic non-protein coding RNA 2097	ncRNA
62093	chr13	94604201	94604750	+	0	NA	intron (NM_180989, intron 1 of 8)	AluSz|SINE|Alu	2618	NM_180989	160897		NM_180989	ENSG00000152749	GPR180	ITR	G protein-coupled receptor 180	protein-coding
44073	chr11	95625271	95625880	+	0	NA	Intergenic	Intergenic	164207	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
72297	chr15	31080621	31081030	+	0	NA	intron (NM_001252020, intron 1 of 26).2	intron (NM_001252020, intron 1 of 26).2	-15684	NR_029624	406993		NR_029624	ENSG00000207702	MIR211	MIRN211|mir-211	microRNA 211	ncRNA
179430	chr4	184319251	184319600	+	0	NA	Intergenic	Intergenic	34552	NR_040108	728175		NR_040108	ENSG00000180712	LINC02363	-	long intergenic non-protein coding RNA 2363	ncRNA
197339	chr6	73424071	73424230	+	0	NA	3' UTR (NM_138441, exon 5 of 5)	3' UTR (NM_138441, exon 5 of 5)	28147	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
78699	chr15	97295671	97295850	+	0	NA	Intergenic	L1PA3|LINE|L1	226051	NR_120324	101927286		NR_120324	ENSG00000259664	LINC02254	-	long intergenic non-protein coding RNA 2254	ncRNA
132967	chr2	111474501	111475000	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	20411	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
122084	chr19	48735651	48735750	+	0	NA	intron (NM_017805, intron 3 of 11)	L2b|LINE|L2	4910	NM_017805	54922		NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
202969	chr6	161264151	161264450	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	9761	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
67265	chr14	69132671	69133500	+	0	NA	intron (NM_001284208, intron 1 of 6)	MIR|SINE|MIR	19514	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
124815	chr2	7594971	7595130	+	0	NA	Intergenic	Intergenic	173789	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
3292	chr1	15328871	15329230	+	0	NA	non-coding (NR_148918, exon 2 of 2)	non-coding (NR_148918, exon 2 of 2)	14833	NR_148918	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
81605	chr16	10509501	10509900	+	0	NA	Intergenic	Intergenic	18498	NR_149081	106144584		NR_149081	ENSG00000260468	LINC01290	-	long intergenic non-protein coding RNA 1290	ncRNA
183093	chr5	74578821	74579750	+	0	NA	Intergenic	Intergenic	-42309	NR_126354	104310351		NR_126354	ENSG00000248673	LINC01331	-	long intergenic non-protein coding RNA 1331	ncRNA
44286	chr11	102310171	102310400	+	0	NA	Intergenic	LTR1|LTR|ERV1	-7199	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
167912	chr3	136164371	136164530	+	0	NA	intron (NM_018133, intron 1 of 1)	intron (NM_018133, intron 1 of 1)	30018	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
58351	chr12	131604121	131604980	+	0	NA	Intergenic	Intergenic	43571	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
199975	chr6	127979171	127979730	+	0	NA	intron (NM_001291981, intron 28 of 32).2	intron (NM_001291981, intron 28 of 32).2	-48415	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
7967	chr1	37765651	37766180	+	0	NA	promoter-TSS (NM_001099439)	promoter-TSS (NM_001099439)	-763	NM_173641	284656		NM_173641	ENSG00000183317	EPHA10	DFNA88	EPH receptor A10	protein-coding
170381	chr3	184754571	184755350	+	0	NA	Intergenic	Intergenic	18195	NR_110043	101928992		NR_110043	ENSG00000229433	LINC02069	-	long intergenic non-protein coding RNA 2069	ncRNA
144453	chr20	35536751	35536850	+	0	NA	Intergenic	AluSx3|SINE|Alu	-5278	NM_198398	51614		NM_015966	ENSG00000125991	ERGIC3	C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2	ERGIC and golgi 3	protein-coding
235279	chrX	41908901	41909700	+	0	NA	intron (NM_001126055, intron 1 of 24)	intron (NM_001126055, intron 1 of 24)	13734	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
167283	chr3	128637701	128637900	+	0	NA	exon (NM_002950, exon 3 of 10)	exon (NM_002950, exon 3 of 10)	13018	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
105277	chr17	82461821	82462780	+	0	NA	intron (NM_001083608, intron 2 of 9)	intron (NM_001083608, intron 2 of 9)	3559	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
145055	chr20	38431751	38433100	+	0	NA	intron (NR_152764, intron 2 of 6)	intron (NR_152764, intron 2 of 6)	1574	NR_003018	677840		NR_003018	ENSG00000200354	SNORA71D	U71d	small nucleolar RNA, H/ACA box 71D	snoRNA
82633	chr16	19065751	19066050	+	0	NA	intron (NR_119381, intron 1 of 2)	AluJb|SINE|Alu	1583	NR_119382	102723385		NR_119379	ENSG00000261465	COQ7-DT	-	COQ7 divergent transcript	ncRNA
67290	chr14	69397501	69399130	+	0	NA	promoter-TSS (NM_001252148)	promoter-TSS (NM_001252148)	-16	NM_004450	2079		NM_004450	ENSG00000100632	ERH	DROER	ERH mRNA splicing and mitosis factor	protein-coding
23179	chr1	226827321	226828480	+	0	NA	Intergenic	Intergenic	-42672	NM_012486	5664		NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2	protein-coding
158402	chr22	50520521	50521050	+	0	NA	intron (NM_001185011, intron 9 of 19)	AluSx|SINE|Alu	4813	NM_005138	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
220006	chr8	90329051	90329150	+	0	NA	intron (NR_051989, intron 2 of 3)	intron (NR_051989, intron 2 of 3)	107612	NR_051989	100874052		NR_051989		LINC00534	-	long intergenic non-protein coding RNA 534	ncRNA
46002	chr11	121557171	121557530	+	0	NA	exon (NM_003105, exon 19 of 48)	exon (NM_003105, exon 19 of 48)	-75561	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
47145	chr12	754621	756230	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	2502	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
112250	chr19	5781971	5782780	+	0	NA	TTS (NM_001134316)	TTS (NM_001134316)	2371	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
102062	chr17	74916821	74917280	+	0	NA	3' UTR (NM_001282489, exon 3 of 3)	3' UTR (NM_001282489, exon 3 of 3)	6205	NM_173477	124590		NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	USH1 protein network component sans	protein-coding
103631	chr17	78746851	78747150	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-10098	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
128061	chr2	47794001	47794400	+	0	NA	intron (NM_001281493, intron 2 of 8)	AluSx|SINE|Alu	10245	NM_001281494	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
41739	chr11	66674321	66674730	+	0	NA	intron (NM_031492, intron 2 of 3)	AluY|SINE|Alu	3362	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
45731	chr11	119110521	119111180	+	0	NA	exon (NM_001290474, exon 4 of 14)	exon (NM_001290474, exon 4 of 14)	3506	NM_014807	9854		NM_014807	ENSG00000172375	C2CD2L	DLNB23|TMEM24	C2CD2 like	protein-coding
95267	chr17	35495101	35495300	+	0	NA	intron (NM_001363830, intron 2 of 4)	MER96B|DNA|hAT-Tip100	-7461	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
40973	chr11	65366151	65366700	+	0	NA	Intergenic	Intergenic	11674	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
160611	chr3	31448321	31448850	+	0	NA	Intergenic	L1M2|LINE|L1	-84340	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
238650	chrX	153985401	153986650	+	0	NA	Intergenic	AluSq|SINE|Alu	-4849	NR_036175	100422877		NR_036175	ENSG00000283694	MIR3202-2	mir-3202-2	microRNA 3202-2	ncRNA
205074	chr7	6634951	6635650	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-2018	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
224583	chr9	20241801	20242000	+	0	NA	Intergenic	Intergenic	169338	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
138156	chr2	202380571	202381130	+	0	NA	intron (NM_001204, intron 1 of 12)	AluSp|SINE|Alu	4523	NM_001204	659		NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding
29854	chr10	72356051	72356500	+	0	NA	Intergenic	L2a|LINE|L2	-1356	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
134678	chr2	144476171	144476530	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-43264	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
146656	chr20	50440851	50441230	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-69281	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
161833	chr3	45676351	45677380	+	0	NA	intron (NM_014240, intron 7 of 7)	intron (NM_014240, intron 7 of 7)	12017	NR_033947	644714		NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
37950	chr11	34438451	34439880	+	0	NA	intron (NM_001752, intron 1 of 12)	CpG	231	NM_001752	847		NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
99163	chr17	49389351	49390200	+	0	NA	Intergenic	AluSz|SINE|Alu	25083	NM_001281496	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
73272	chr15	41848571	41849200	+	0	NA	TTS (NM_001114633)	TTS (NM_001114633)	10072	NM_001114633	100137049		NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2 group IVB	protein-coding
169822	chr3	177134701	177134930	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	61663	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
10869	chr1	78002171	78002630	+	0	NA	intron (NM_001317100, intron 2 of 3)	intron (NM_001317100, intron 2 of 3)	-2428	NM_001317103	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
9676	chr1	52728221	52729080	+	0	NA	intron (NM_024646, intron 1 of 13)	intron (NM_024646, intron 1 of 13)	2197	NM_024646	79699		NM_024646	ENSG00000162378	ZYG11B	ZYG11	zyg-11 family member B, cell cycle regulator	protein-coding
127113	chr2	37645421	37646430	+	0	NA	exon (NM_001270438, exon 2 of 2)	exon (NM_001270438, exon 2 of 2)	25717	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
24450	chr1	243806201	243806650	+	0	NA	intron (NM_005465, intron 2 of 13)	intron (NM_005465, intron 2 of 13)	36857	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
181346	chr5	40435421	40435930	+	0	NA	Intergenic	L1PA5|LINE|L1	-244240	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
192686	chr6	26269071	26269430	+	0	NA	Intergenic	LTR8|LTR|ERV1	2163	NM_003534	8355		NM_003534	ENSG00000273983	H3C8	H3/h|H3C1|H3C10|H3C11|H3C12|H3C2|H3C3|H3C4|H3C6|H3C7|H3FH|HIST1H3G	H3 clustered histone 8	protein-coding
238900	chrX	154628771	154629450	+	0	NA	Intergenic	Intergenic	4072	NR_027401	100132967		NR_027401	ENSG00000279245	FAM223A	CXorf52|LINC00204A|NCRNA00204|NCRNA00204A|SPCX	family with sequence similarity 223 member A	ncRNA
175992	chr4	81688171	81688350	+	0	NA	Intergenic	Intergenic	-216353	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
222287	chr8	133455551	133456550	+	0	NA	3' UTR (NM_003033, exon 9 of 9)	3' UTR (NM_003033, exon 9 of 9)	115837	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
146906	chr20	51544301	51544700	+	0	NA	intron (NM_001258292, intron 1 of 9)	L2b|LINE|L2	-1781	NM_001258296	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
41568	chr11	66330951	66331250	+	0	NA	3' UTR (NM_001363559, exon 10 of 10)	3' UTR (NM_001363559, exon 10 of 10)	5334	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
212837	chr7	130561171	130561330	+	0	NA	intron (NM_001290033, intron 11 of 19)	intron (NM_001290033, intron 11 of 19)	17797	NR_024086	53844		NR_024086		COPG2IT1	CIT1|COPG2AS|DKFZP761N09121|NCRNA00170	COPG2 imprinted transcript 1	ncRNA
55679	chr12	107462571	107462730	+	0	NA	intron (NM_001347944, intron 1 of 14)	(ATG)n|Simple_repeat|Simple_repeat	-118224	NM_001017523	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
51671	chr12	53064001	53064430	+	0	NA	TTS (NM_032840)	TTS (NM_032840)	7271	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
25987	chr10	11882451	11882880	+	0	NA	intron (NR_038222, intron 2 of 5)	intron (NR_038222, intron 2 of 5)	12045	NR_038222	219731		NR_038222	ENSG00000225778	PROSER2-AS1	-	PROSER2 antisense RNA 1	ncRNA
54646	chr12	92934801	92935000	+	0	NA	Intergenic	Intergenic	-5605	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
119090	chr19	39264151	39264450	+	0	NA	Intergenic	Intergenic	-4096	NM_172138	282616		NM_172138	ENSG00000183709	IFNL2	IFNL2a|IFNL3a|IL-28A|IL28A	interferon lambda 2	protein-coding
159010	chr3	10437051	10438100	+	0	NA	intron (NM_001353564, intron 3 of 20)	intron (NM_001353564, intron 3 of 20)	-43013	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
209591	chr7	77539771	77540480	+	0	NA	intron (NM_001131008, intron 1 of 17)	intron (NM_001131008, intron 1 of 17)	2082	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
84994	chr16	31466951	31467550	+	0	NA	TTS (NM_001301820)	TTS (NM_001301820)	-4902	NM_001042454	7041		NM_015927	ENSG00000140682	TGFB1I1	ARA55|HIC-5|HIC5|TSC-5	transforming growth factor beta 1 induced transcript 1	protein-coding
181891	chr5	54528971	54529130	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	11291	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
19616	chr1	179906951	179907250	+	0	NA	intron (NM_015602, intron 6 of 9)	intron (NM_015602, intron 6 of 9)	24815	NM_001267578	26092		NM_015602	ENSG00000143337	TOR1AIP1	LAP1|LAP1B|LAP1C|LGMD2Y	torsin 1A interacting protein 1	protein-coding
223565	chr8	144262071	144263230	+	0	NA	promoter-TSS (NR_107057)	promoter-TSS (NR_107057)	87	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
238365	chrX	149916721	149917030	+	0	NA	Intergenic	L1MCb|LINE|L1	-12698	NM_001351114	101927685		NM_001351114	ENSG00000283463	HSFX4	-	heat shock transcription factor family, X-linked member 4	protein-coding
85456	chr16	50644721	50645200	+	0	NA	3' UTR (NM_033119, exon 10 of 10)	3' UTR (NM_033119, exon 10 of 10)	-23895	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
235122	chrX	40733601	40733830	+	0	NA	intron (NM_004229, intron 1 of 30)	L2a|LINE|L2	1827	NM_004229	9282		NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
191059	chr6	3329921	3330050	+	0	NA	intron (NM_001382320, intron 1 of 1)	intron (NM_001382320, intron 1 of 1)	-5835	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
153720	chr22	29295171	29295330	+	0	NA	intron (NM_001163286, intron 10 of 15)	intron (NM_001163286, intron 10 of 15)	-11773	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
2656	chr1	10447021	10447280	+	0	NA	intron (NM_001270517, intron 5 of 5)	intron (NM_001270517, intron 5 of 5)	-2881	NM_001302	1325		NM_001302	ENSG00000241563	CORT	CST-14|CST-17|CST-29|SST2	cortistatin	protein-coding
233882	chrX	1578571	1578730	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-12954	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
48557	chr12	10238871	10239030	+	0	NA	promoter-TSS (NM_001351060)	promoter-TSS (NM_001351060)	-11	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
215439	chr7	157692251	157692680	+	0	NA	intron (NM_130842, intron 11 of 21)	CpG	-118043	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
143721	chr20	32283301	32284100	+	0	NA	intron (NM_004798, intron 1 of 8)	AluSx|SINE|Alu	6049	NM_004798	9371		NM_004798	ENSG00000101350	KIF3B	FLA8|HH0048|KLP-11|OTSC12|RP89	kinesin family member 3B	protein-coding
78856	chr15	100333871	100334930	+	0	NA	intron (NM_139057, intron 2 of 21)	intron (NM_139057, intron 2 of 21)	7575	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
44962	chr11	116840851	116841150	+	0	NA	intron (NR_126362, intron 1 of 1)	intron (NR_126362, intron 1 of 1)	-3050	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
207787	chr7	50227721	50228630	+	0	NA	Intergenic	Intergenic	-75889	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
137789	chr2	199685701	199685900	+	0	NA	Intergenic	Intergenic	77732	NR_110270	101927641		NR_110270	ENSG00000238217	LINC01877	-	long intergenic non-protein coding RNA 1877	ncRNA
210767	chr7	100692871	100693030	+	0	NA	intron (NR_164719, intron 1 of 26)	intron (NR_164719, intron 1 of 26)	1300	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
194989	chr6	35371271	35371430	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	28792	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
183377	chr5	77491901	77492900	+	0	NA	promoter-TSS (NM_018268)	promoter-TSS (NM_018268)	-84	NM_018268	55255		NM_018268	ENSG00000164253	WDR41	MSTP048	WD repeat domain 41	protein-coding
206463	chr7	32938321	32938980	+	0	NA	intron (NR_003500, intron 1 of 5)	AluSg|SINE|Alu	4520	NR_003500	441212		NM_001039754	ENSG00000291146	RP9P	-	RP9 pseudogene	pseudo
149011	chr21	14532851	14533150	+	0	NA	intron (NM_001286523, intron 1 of 8)	AluJr4|SINE|Alu	13315	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
199641	chr6	121839051	121839150	+	0	NA	Intergenic	Intergenic	403454	NM_000165	2697		NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
49374	chr12	22406701	22406930	+	0	NA	Intergenic	Intergenic	-72101	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
186319	chr5	134588271	134588630	+	0	NA	Intergenic	Intergenic	44378	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
63967	chr14	22152971	22153130	+	0	NA	Intergenic	Intergenic	279703	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
115108	chr19	14348051	14348880	+	0	NA	intron (NR_134908, intron 1 of 3)	intron (NR_134908, intron 1 of 3)	14722	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
118183	chr19	35085651	35086580	+	0	NA	intron (NR_024561, intron 2 of 3)	MER58B|DNA|hAT-Charlie	20156	NR_024561	100128675		NR_024561	ENSG00000227392	HPN-AS1	-	HPN antisense RNA 1	ncRNA
223472	chr8	144046751	144046850	+	0	NA	exon (NM_198572, exon 5 of 5)	exon (NM_198572, exon 5 of 5)	-2598	NR_158554	392275		NR_158554		SMPD5	MA-nSMase	sphingomyelin phosphodiesterase 5 (pseudogene)	pseudo
16809	chr1	155566921	155567550	+	0	NA	Intergenic	AluSx|SINE|Alu	-4432	NM_001366177	55870		NM_018489	ENSG00000116539	ASH1L	ASH1|ASH1L1|KMT2H|MRD52	ASH1 like histone lysine methyltransferase	protein-coding
80094	chr16	2007801	2008600	+	0	NA	intron (NM_178167, intron 3 of 13)	intron (NM_178167, intron 3 of 13)	1621	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
83140	chr16	23155551	23155650	+	0	NA	Intergenic	Intergenic	-6330	NM_020718	57478		NM_020718	ENSG00000103404	USP31	-	ubiquitin specific peptidase 31	protein-coding
9070	chr1	44833571	44833730	+	0	NA	intron (NM_001166292, intron 2 of 22)	AluJr|SINE|Alu	9294	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
104160	chr17	80396601	80397200	+	0	NA	3' UTR (NM_001256071, exon 68 of 68)	3' UTR (NM_001256071, exon 68 of 68)	-18267	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
137617	chr2	197305971	197306130	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	-3531	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
207619	chr7	44995201	44997030	+	0	NA	Intergenic	AluJo|SINE|Alu	-3631	NR_030770	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
204666	chr7	5462351	5462850	+	0	NA	intron (NM_001363441, intron 4 of 4)	intron (NM_001363441, intron 4 of 4)	33317	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
49	chr1	204451	204800	+	0	NA	TTS (NR_026823)	TTS (NR_026823)	1972	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
42139	chr11	67645321	67645930	+	0	NA	intron (NM_080658, intron 4 of 7)	intron (NM_080658, intron 4 of 7)	5105	NM_080658	91703		NM_080658	ENSG00000132744	ACY3	ACY-3|HCBP1	aminoacylase 3	protein-coding
151193	chr21	45087021	45087950	+	0	NA	intron (NM_001346688, intron 1 of 11)	L1MC4a|LINE|L1	12434	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
111113	chr19	3212401	3212950	+	0	NA	Intergenic	AluSx|SINE|Alu	-11986	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
40062	chr11	62745671	62745830	+	0	NA	Intergenic	AluY|SINE|Alu	8410	NM_001370809	79842		NM_024784	ENSG00000185670	ZBTB3	-	zinc finger and BTB domain containing 3	protein-coding
174632	chr4	40315301	40315500	+	0	NA	intron (NR_121641, intron 2 of 3)	Charlie7|DNA|hAT-Charlie	-1084	NR_121640	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
163031	chr3	49811051	49811750	+	0	NA	exon (NM_003335, exon 9 of 24)	exon (NM_003335, exon 9 of 24)	2553	NM_003335	7318		NM_003335	ENSG00000182179	UBA7	D8|UBA1B|UBE1L|UBE2|UBE7	ubiquitin like modifier activating enzyme 7	protein-coding
162662	chr3	48915421	48916100	+	0	NA	Intergenic	AluSx|SINE|Alu	-3082	NM_001349230	10425		NM_006321	ENSG00000177479	ARIH2	ARI2|TRIAD1	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding
139419	chr2	222690451	222690930	+	0	NA	intron (NM_058165, intron 3 of 5)	intron (NM_058165, intron 3 of 5)	19032	NM_058165	116255		NM_058165	ENSG00000124003	MOGAT1	DGAT2L|DGAT2L1|MGAT1	monoacylglycerol O-acyltransferase 1	protein-coding
209417	chr7	76353171	76353530	+	0	NA	intron (NM_012479, intron 1 of 1)	AluSx3|SINE|Alu	5641	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
210510	chr7	100208621	100209500	+	0	NA	non-coding (NR_028038, exon 7 of 7)	non-coding (NR_028038, exon 7 of 7)	-10188	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
100011	chr17	57892431	57893130	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	10609	NM_001292025	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
212496	chr7	128596221	128596680	+	0	NA	Intergenic	L2a|LINE|L2	-44791	NR_024368	402483		NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
77274	chr15	81995201	81995630	+	0	NA	Intergenic	L1HS|LINE|L1	50603	NM_032246	84206		NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
163304	chr3	50346551	50346650	+	0	NA	promoter-TSS (NM_001308379)	promoter-TSS (NM_001308379)	-868	NM_001308379	51364		NM_015896	ENSG00000004838	ZMYND10	BLU|CILD22|DNAAF7|FLU	zinc finger MYND-type containing 10	protein-coding
60634	chr13	42372051	42372150	+	0	NA	Intergenic	AluY|SINE|Alu	-52792	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
145583	chr20	44517401	44518530	+	0	NA	intron (NM_006811, intron 1 of 9)	L2|LINE|L2	4105	NM_006811	10955		NM_006811	ENSG00000132824	SERINC3	AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1	serine incorporator 3	protein-coding
175274	chr4	67527301	67527900	+	0	NA	intron (NR_155754, intron 5 of 18)	AluJr|SINE|Alu	17903	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
134800	chr2	147989671	147990530	+	0	NA	intron (NM_001190879, intron 1 of 14)	intron (NM_001190879, intron 1 of 14)	30637	NM_001374272	5000		NM_002552	ENSG00000115947	ORC4	ORC4L|ORC4P	origin recognition complex subunit 4	protein-coding
148508	chr20	64083401	64084930	+	0	NA	promoter-TSS (NM_001200019)	promoter-TSS (NM_001200019)	194	NM_001007125	198437		NM_001007125	ENSG00000171695	LKAAEAR1	C20orf201	LKAAEAR motif containing 1	protein-coding
167859	chr3	134308171	134308750	+	0	NA	Intergenic	Intergenic	-5116	NR_146711	105374119		NR_146711	ENSG00000240006	LINC02004	-	long intergenic non-protein coding RNA 2004	ncRNA
204698	chr7	5516471	5516830	+	0	NA	intron (NR_126168, intron 1 of 3)	AluSc|SINE|Alu	2796	NR_126168	221946		NR_126168		LOC221946	-	uncharacterized LOC221946	ncRNA
87832	chr16	75629921	75630500	+	0	NA	intron (NM_001378148, intron 11 of 13)	MLT1H2|LTR|ERVL-MaLR	-6929	NM_001324448	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
90821	chr17	2275751	2276530	+	0	NA	intron (NM_017575, intron 8 of 18)	Tigger9b|DNA|TcMar-Tigger	-9955	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
192328	chr6	22062921	22063380	+	0	NA	intron (NR_015410, intron 8 of 11)	intron (NR_015410, intron 8 of 11)	84043	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
193281	chr6	30008571	30008730	+	0	NA	intron (NR_024240, intron 4 of 6)	intron (NR_024240, intron 4 of 6)	2679	NR_024240	3137		NR_024240	ENSG00000290574	HLA-J	CDA12|D6S203|HLA-59|HLA-CDA12	major histocompatibility complex, class I, J (pseudogene)	pseudo
151342	chr21	45636821	45637400	+	0	NA	Intergenic	Intergenic	-6615	NM_001382287	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
135094	chr2	157348371	157348730	+	0	NA	Intergenic	L3|LINE|CR1	-20838	NM_001009959	57471		NM_020711	ENSG00000136541	ERMN	JN|KIAA1189	ermin	protein-coding
172551	chr4	2397221	2397480	+	0	NA	intron (NM_020972, intron 1 of 12)	AluSx|SINE|Alu	21295	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
194548	chr6	33325051	33325580	+	0	NA	intron (NM_001369203, intron 1 of 2).4	AluSx|SINE|Alu	-2299	NM_001254717	1616		NM_001350	ENSG00000204209	DAXX	BING2|DAP6|EAP1|SMIM40	death domain associated protein	protein-coding
23867	chr1	234803051	234803350	+	0	NA	Intergenic	Intergenic	-43144	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
12550	chr1	108659001	108659880	+	0	NA	intron (NM_144584, intron 2 of 7)	MER3|DNA|hAT-Charlie	1653	NM_001102592	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
34706	chr10	133475351	133476280	+	0	NA	Intergenic	Intergenic	21887	NR_149718	619207		NM_001033584	ENSG00000214279	SCART1	-	scavenger receptor family member expressed on T cells 1	protein-coding
24617	chr1	246560671	246561130	+	0	NA	intron (NM_022366, intron 2 of 7)	AluSx3|SINE|Alu	5361	NM_022366	64216		NM_022366	ENSG00000162851	TFB2M	Hkp1|h-mtTFB|h-mtTFB2|hTFB2M|mtTFB2	transcription factor B2, mitochondrial	protein-coding
131265	chr2	96059821	96060080	+	0	NA	Intergenic	Intergenic	-23976	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
102236	chr17	75248151	75248580	+	0	NA	intron (NM_001172703, intron 1 of 16)	AluYe5|SINE|Alu	13241	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
213151	chr7	131512271	131512700	+	0	NA	intron (NM_005397, intron 1 of 7)	L2a|LINE|L2	44143	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
110534	chr19	2084301	2084800	+	0	NA	intron (NM_130807, intron 2 of 4)	intron (NM_130807, intron 2 of 4)	11776	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
188406	chr5	154047271	154047850	+	0	NA	intron (NM_001242336, intron 1 of 2)	MER113|DNA|hAT-Charlie	8593	NM_005927	4238		NM_005927	ENSG00000037749	MFAP3	-	microfibril associated protein 3	protein-coding
223104	chr8	143436771	143437100	+	0	NA	TTS (NM_015117)	TTS (NM_015117)	-6203	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
200300	chr6	132821901	132822100	+	0	NA	Intergenic	AluSx4|SINE|Alu	4781	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
11227	chr1	88882021	88883000	+	0	NA	intron (NM_001514, intron 2 of 6)	Cheshire|DNA|hAT-Charlie	9057	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
97885	chr17	45100771	45101380	+	0	NA	intron (NM_021079, intron 8 of 11)	AluY|SINE|Alu	13358	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
59734	chr13	29851771	29852680	+	0	NA	Intergenic	Intergenic	-1608	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
159237	chr3	12918071	12918430	+	0	NA	intron (NM_014869, intron 6 of 13)	intron (NM_014869, intron 6 of 13)	-33039	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
212468	chr7	128476221	128477680	+	0	NA	intron (NM_018396, intron 1 of 8)	CpG	202	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
189067	chr5	170267811	170268600	+	0	NA	intron (NM_005565, intron 8 of 20)	intron (NM_005565, intron 8 of 20)	29572	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
3769	chr1	16686671	16686930	+	0	NA	Intergenic	Intergenic	5545	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
158927	chr3	10024171	10024330	+	0	NA	intron (NR_002786, intron 1 of 2)	AluJo|SINE|Alu	1886	NR_002786	152302		NR_002786	ENSG00000186162	CIDECP1	CICE|CIDECP	CIDEC pseudogene 1	pseudo
90128	chr16	90168321	90168680	+	0	NA	intron (NR_126161, intron 3 of 3)	intron (NR_126161, intron 3 of 3)	66236	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
191353	chr6	7145101	7145630	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	37404	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
74849	chr15	63520601	63521000	+	0	NA	intron (NR_046342, intron 1 of 15)	AluSq2|SINE|Alu	16207	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
193000	chr6	28143321	28143580	+	0	NA	intron (NM_001278121, intron 1 of 6)	intron (NM_001278121, intron 1 of 6)	1239	NM_001278121	7745		NM_006298	ENSG00000198315	ZKSCAN8	LD5-1|ZNF192|ZSCAN40	zinc finger with KRAB and SCAN domains 8	protein-coding
221985	chr8	129998401	129999030	+	0	NA	intron (NM_001353269, intron 1 of 10)	AluSz|SINE|Alu	9738	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
75876	chr15	69721451	69722120	+	0	NA	Intergenic	AluY|SINE|Alu	-113449	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
60353	chr13	40799501	40799700	+	0	NA	non-coding (NR_038258, exon 8 of 8)	non-coding (NR_038258, exon 8 of 8)	9989	NM_014252	10166		NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|LNC-HC|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
45577	chr11	118874101	118874800	+	0	NA	Intergenic	AluJr|SINE|Alu	-9442	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
90783	chr17	2081571	2082380	+	0	NA	intron (NM_001282326, intron 2 of 6)	intron (NM_001282326, intron 2 of 6)	6786	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
66051	chr14	58340451	58340750	+	0	NA	intron (NM_023000, intron 11 of 23)	AluSx|SINE|Alu	42045	NM_002892	5926		NM_002892	ENSG00000032219	ARID4A	RBBP-1|RBBP1|RBP-1|RBP1	AT-rich interaction domain 4A	protein-coding
1752	chr1	6005981	6006730	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	13679	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
86162	chr16	57761551	57761850	+	0	NA	intron (NR_134678, intron 13 of 18)	intron (NR_134678, intron 13 of 18)	10652	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
78391	chr15	91867721	91868330	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	13721	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
225453	chr9	35113851	35114800	+	0	NA	intron (NM_025182, intron 1 of 8)	intron (NM_025182, intron 1 of 8)	1537	NR_134455	80256		NM_025182	ENSG00000005238	ATOSB	FAM214B|KIAA1539	atos homolog B	protein-coding
186013	chr5	133967701	133969010	+	0	NA	promoter-TSS (NR_134247)	promoter-TSS (NR_134247)	270	NM_020199	56951		NM_020199	ENSG00000113583	C5orf15	HTGN29|KCT2	chromosome 5 open reading frame 15	protein-coding
31908	chr10	100391901	100392200	+	0	NA	Intergenic	HAL1|LINE|L1	18474	NR_026762	90271		NR_026762	ENSG00000235823	OLMALINC	C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS	oligodendrocyte maturation-associated long intergenic non-coding RNA	ncRNA
224055	chr9	3521821	3522900	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	3641	NM_002919	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
228915	chr9	113067921	113068230	+	0	NA	Intergenic	CpG	-11351	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
85305	chr16	49455221	49455680	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	63135	NR_144553	1596		NR_144553	ENSG00000260089	ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
65887	chr14	55160971	55161330	+	0	NA	intron (NM_014750, intron 13 of 18)	intron (NM_014750, intron 13 of 18)	24167	NR_003225	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
51520	chr12	52245571	52245730	+	0	NA	non-coding (NR_146274, exon 2 of 2)	non-coding (NR_146274, exon 2 of 2)	1798	NR_146274	109729127		NR_146274	ENSG00000257671	KRT7-AS	-	KRT7 antisense RNA 1	ncRNA
111736	chr19	4357271	4357430	+	0	NA	exon (NM_001300862, exon 9 of 13)	exon (NM_001300862, exon 9 of 13)	13788	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
58659	chr12	132526501	132527200	+	0	NA	intron (NM_001382740, intron 3 of 11)	intron (NM_001382740, intron 3 of 11)	21444	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
10177	chr1	61276351	61276450	+	0	NA	intron (NM_001145512, intron 3 of 11)	intron (NM_001145512, intron 3 of 11)	-22882	NR_104180	645030		NR_104180	ENSG00000237853	NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
46194	chr11	123442671	123442830	+	0	NA	intron (NM_001367421, intron 2 of 20)	AluSx1|SINE|Alu	12481	NM_001354837	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
183520	chr5	79630401	79631000	+	0	NA	intron (NM_173797, intron 5 of 15)	L2b|LINE|L2	18259	NM_001349554	167153		NM_173797	ENSG00000164329	TENT2	APD4|GLD2|PAPD4|TUT2	terminal nucleotidyltransferase 2	protein-coding
88476	chr16	85077151	85077450	+	0	NA	intron (NM_014732, intron 5 of 12)	intron (NM_014732, intron 5 of 12)	14088	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
235297	chrX	42430751	42430850	+	0	NA	Intergenic	L1PA2|LINE|L1	347363	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
105299	chr17	82517601	82518080	+	0	NA	Intergenic	Intergenic	-1892	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
127532	chr2	42321101	42322550	+	0	NA	intron (NM_019063, intron 19 of 22)	intron (NM_019063, intron 19 of 22)	38213	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
214335	chr7	149412771	149412930	+	0	NA	Intergenic	L1PA14|LINE|L1	48212	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
52257	chr12	54423171	54423530	+	0	NA	intron (NR_120488, intron 1 of 2)	intron (NR_120488, intron 1 of 2)	3565	NR_120488	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
91278	chr17	4109371	4109730	+	0	NA	intron (NM_015113, intron 6 of 54)	intron (NM_015113, intron 6 of 54)	33480	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
80324	chr16	2430401	2430700	+	0	NA	intron (NM_001323538, intron 1 of 15)	MIRb|SINE|MIR	1103	NM_001323538	899		NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1|FTDALS5	cyclin F	protein-coding
202806	chr6	159174221	159174680	+	0	NA	intron (NM_032532, intron 1 of 22)	intron (NM_032532, intron 1 of 22)	-4443	NR_121668	101929122		NR_121668		FNDC1-AS1	-	FNDC1 antisense RNA 1	ncRNA
10379	chr1	64964301	64964500	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	2149	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
61512	chr13	53151721	53152000	+	0	NA	promoter-TSS (NR_125788)	promoter-TSS (NR_125788)	40	NR_125788	102723875		NR_125788		LINC01065	-	long intergenic non-protein coding RNA 1065	ncRNA
53981	chr12	74892201	74892730	+	0	NA	Intergenic	Intergenic	317283	NM_139136	3747		NM_139136	ENSG00000166006	KCNC2	DEE103|KV3.2	potassium voltage-gated channel subfamily C member 2	protein-coding
37234	chr11	14503601	14504300	+	0	NA	TTS (NM_002786)	TTS (NM_002786)	-4081	NM_001144062	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
120862	chr19	45529901	45530100	+	0	NA	intron (NM_001017989, intron 1 of 1)	AluJo|SINE|Alu	22521	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
127905	chr2	46299921	46300180	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	2643	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
62116	chr13	95478451	95478980	+	0	NA	TTS (NR_046533)	TTS (NR_046533)	45116	NM_182848	9071		NM_006984	ENSG00000134873	CLDN10	CPETRL3|HELIX|OSP-L|OSPL	claudin 10	protein-coding
232198	chr9	134323971	134324580	+	0	NA	Intergenic	Intergenic	-2180	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
79585	chr16	1005071	1005430	+	0	NA	Intergenic	Intergenic	23480	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
188094	chr5	150342601	150342880	+	0	NA	Intergenic	L1M5|LINE|L1	-14899	NM_001135243	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
170702	chr3	187926771	187926930	+	0	NA	Intergenic	Intergenic	49557	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
149884	chr21	35927021	35927680	+	0	NA	Intergenic	Intergenic	40905	NR_144547	54036		NR_144547		PPP1R2P2	-	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2	pseudo
898	chr1	1676021	1676580	+	0	NA	intron (NM_001110781, intron 2 of 8)	intron (NM_001110781, intron 2 of 8)	16495	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
234230	chrX	13013421	13014180	+	0	NA	Intergenic	Intergenic	30820	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
52777	chr12	56686701	56689320	+	0	NA	non-coding (NR_104219, exon 1 of 8)	non-coding (NR_104219, exon 1 of 8)	274	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
108731	chr18	77093821	77094280	+	0	NA	intron (NM_001025100, intron 2 of 3)	AluSg|SINE|Alu	38733	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
90056	chr16	89936551	89936850	+	0	NA	TTS (NM_006086)	TTS (NM_006086)	-12031	NM_001242821	54849		NM_017702	ENSG00000140995	DEF8	-	differentially expressed in FDCP 8 homolog	protein-coding
122732	chr19	50046801	50047200	+	0	NA	exon (NM_001006656, exon 5 of 5)	exon (NM_001006656, exon 5 of 5)	-3589	NR_027257	400710		NR_027257	ENSG00000204666	ZNF473CR	-	ZNF473 cis regulating lncRNA	ncRNA
42906	chr11	73382771	73383480	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	6457	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
91758	chr17	6833421	6833880	+	0	NA	Intergenic	AluJb|SINE|Alu	-1921	NM_053285	83659		NM_053285	ENSG00000167858	TEKT1	-	tektin 1	protein-coding
135406	chr2	160940701	160941050	+	0	NA	Intergenic	Intergenic	-196080	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
18330	chr1	161190671	161191230	+	0	NA	exon (NM_001320336, exon 9 of 9)	exon (NM_001320336, exon 9 of 9)	-6467	NM_001377298	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
4655	chr1	22176271	22176430	+	0	NA	Intergenic	Intergenic	-33253	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
28567	chr10	50671221	50671480	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	46399	NR_126411	104355295		NR_126411		SGMS1-AS1	-	SGMS1 antisense RNA 1	ncRNA
127655	chr2	43156551	43156650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-54155	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
24952	chr10	1631371	1631530	+	0	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	84690	NR_152792	642394		NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168	ADARB2 antisense RNA 1	ncRNA
142394	chr20	3822751	3823050	+	0	NA	intron (NM_001204446, intron 2 of 2)	intron (NM_001204446, intron 2 of 2)	2353	NM_001204447	55317		NM_018347	ENSG00000125843	AP5S1	C20orf29	adaptor related protein complex 5 subunit sigma 1	protein-coding
164802	chr3	69439551	69439850	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-53612	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
130585	chr2	85851021	85851900	+	0	NA	5' UTR (NM_001354248, exon 2 of 6)	5' UTR (NM_001354248, exon 2 of 6)	2711	NM_001354248	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
72464	chr15	32434151	32434880	+	0	NA	intron (NR_027470, intron 2 of 4).3	CpG	534	NR_027470	100288380		NR_027470	ENSG00000290723	ULK4P2	D-X|FAM7A2	ULK4 pseudogene 2	pseudo
155152	chr22	37670951	37671550	+	0	NA	Intergenic	Intergenic	-4386	NM_002305	3956		NM_002305	ENSG00000100097	LGALS1	GAL1|GBP	galectin 1	protein-coding
233750	chrX	1387851	1388530	+	0	NA	intron (NM_001636, intron 2 of 3)	MLT1B|LTR|ERVL-MaLR	3923	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
61388	chr13	51523201	51523500	+	0	NA	Intergenic	Intergenic	-29239	NR_039852	100616423		NR_039852	ENSG00000266611	MIR4703	-	microRNA 4703	ncRNA
37452	chr11	18107771	18107930	+	0	NA	Intergenic	AluYe5|SINE|Alu	-1768	NM_138421	113174		NM_138421	ENSG00000166788	SAAL1	SPACIA1	serum amyloid A like 1	protein-coding
144188	chr20	34215901	34216330	+	0	NA	intron (NM_001385218, intron 1 of 3)	CpG	21553	NM_001385218	434		NM_001672	ENSG00000101440	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
20544	chr1	198700671	198700830	+	0	NA	intron (NM_002838, intron 5 of 32)	intron (NM_002838, intron 5 of 32)	61710	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
177751	chr4	122602521	122602800	+	0	NA	Intergenic	Intergenic	-16323	NR_104126	100996941		NR_104126	ENSG00000227145	IL21-AS1	-	IL21 antisense RNA 1	ncRNA
104313	chr17	80906801	80907000	+	0	NA	intron (NM_020761, intron 20 of 33)	intron (NM_020761, intron 20 of 33)	64313	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
129758	chr2	71019421	71019680	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-4525	NR_002185	79315		NR_002185	ENSG00000290930	OR7E91P	-	olfactory receptor family 7 subfamily E member 91 pseudogene	pseudo
53792	chr12	69053151	69053250	+	0	NA	Intergenic	Intergenic	-89960	NM_001874	1368		NM_001874	ENSG00000135678	CPM	-	carboxypeptidase M	protein-coding
173065	chr4	6169971	6170780	+	0	NA	intron (NM_144720, intron 1 of 12)	(ACC)n|Simple_repeat|Simple_repeat	24244	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
36605	chr11	6742001	6742630	+	0	NA	Intergenic	LTR8|LTR|ERV1	-20436	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
176141	chr4	83130171	83130530	+	0	NA	Intergenic	AluY|SINE|Alu	-15621	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
107098	chr18	35049921	35050680	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	8887	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
59472	chr13	26073521	26073900	+	0	NA	Intergenic	Intergenic	-14188	NR_146971	107984009		NR_146971		LINC00415	-	long intergenic non-protein coding RNA 415	ncRNA
117864	chr19	32498451	32499150	+	0	NA	Intergenic	LTR45C|LTR|ERV1	-82390	NM_004708	9141		NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
100884	chr17	64385131	64385600	+	0	NA	intron (NM_000442, intron 2 of 15)	intron (NM_000442, intron 2 of 15)	5495	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
219672	chr8	80508951	80509950	+	0	NA	intron (NM_023929, intron 2 of 6)	intron (NM_023929, intron 2 of 6)	23224	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
146869	chr20	51483721	51484580	+	0	NA	intron (NM_173091, intron 3 of 9)	L2a|LINE|L2	-31173	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
234384	chrX	16433101	16433300	+	0	NA	Intergenic	Intergenic	193885	NR_039762	100616428		NR_039762	ENSG00000265144	MIR548AM	-	microRNA 548am	ncRNA
13284	chr1	112953601	112954250	+	0	NA	intron (NM_003051, intron 1 of 4)	L2b|LINE|L2	2138	NM_001166496	6566		NM_003051	ENSG00000155380	SLC16A1	HHF7|MCT|MCT1|MCT1D	solute carrier family 16 member 1	protein-coding
71666	chr15	17081521	17081780	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-3201094	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
195143	chr6	35692371	35693050	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluSx|SINE|Alu	-3768	NM_001145777	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
132948	chr2	111457351	111458030	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	37471	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
66826	chr14	64763021	64763350	+	0	NA	intron (NM_001355436, intron 32 of 35)	intron (NM_001355436, intron 32 of 35)	22501	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
94956	chr17	32117051	32117350	+	0	NA	Intergenic	L1MB3|LINE|L1	-25254	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
20052	chr1	185539371	185539530	+	0	NA	Intergenic	Intergenic	89038	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
111360	chr19	3687521	3688800	+	0	NA	intron (NM_001300849, intron 1 of 16)	CpG	12308	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
231631	chr9	131589471	131589830	+	0	NA	intron (NM_001377935, intron 19 of 26)	intron (NM_001377935, intron 19 of 26)	44127	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
95494	chr17	36262151	36262450	+	0	NA	intron (NM_001291463, intron 3 of 13).13	intron (NM_001291463, intron 3 of 13).13	2213	NM_001291465	101060389		NM_001123390	ENSG00000274419	TBC1D3D	PRC17|TBC1D3|TBC1D3A|TBC1D3H	TBC1 domain family member 3D	protein-coding
17966	chr1	160443321	160444150	+	0	NA	Intergenic	AluSx1|SINE|Alu	43171	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
125320	chr2	10721221	10722180	+	0	NA	promoter-TSS (NM_001039362)	promoter-TSS (NM_001039362)	70	NM_001039362	245973		NM_144583	ENSG00000143882	ATP6V1C2	ATP6C2|VMA5	ATPase H+ transporting V1 subunit C2	protein-coding
230813	chr9	129031671	129032100	+	0	NA	Intergenic	LTR28B|LTR|ERV1	-3532	NM_001287046	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
55168	chr12	100190971	100191140	+	0	NA	Intergenic	MIRb|SINE|MIR	1171	NR_031728	100302217		NR_031728	ENSG00000221476	MIR1827	MIRN1827|hsa-mir-1827	microRNA 1827	ncRNA
114503	chr19	12780101	12780600	+	0	NA	Intergenic	Intergenic	-4798	NM_013312	29911		NM_013312	ENSG00000095066	HOOK2	HK2	hook microtubule tethering protein 2	protein-coding
74413	chr15	58991101	58991500	+	0	NA	intron (NM_001270530, intron 1 of 13)	AluSg|SINE|Alu	3154	NM_001270530	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
26926	chr10	26477101	26477500	+	0	NA	intron (NM_019043, intron 2 of 14)	L1MC4|LINE|L1	38959	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
146735	chr20	50748951	50749530	+	0	NA	intron (NM_032521, intron 2 of 2)	AluSc8|SINE|Alu	17660	NM_032521	84612		NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding
55400	chr12	104468601	104468800	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	11752	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
98949	chr17	48639121	48639830	+	0	NA	Intergenic	Intergenic	-6916	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
169478	chr3	169664151	169664630	+	0	NA	promoter-TSS (NM_001366473)	promoter-TSS (NM_001366473)	-678	NM_001366473	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
107066	chr18	32772071	32772450	+	0	NA	intron (NM_020805, intron 1 of 8)	CpG	763	NM_020805	57565		NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding
78021	chr15	89892221	89892800	+	0	NA	intron (NM_001199058, intron 5 of 9)	AluJo|SINE|Alu	1484	NM_005829	10239		NM_005829	ENSG00000157823	AP3S2	AP3S3|sigma3b	adaptor related protein complex 3 subunit sigma 2	protein-coding
110086	chr19	1519701	1519900	+	0	NA	Intergenic	AluJr|SINE|Alu	-4277	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
153173	chr22	23828921	23829180	+	0	NA	intron (NM_003073, intron 7 of 8).2	intron (NM_003073, intron 7 of 8).2	9956	NM_001135751	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
3095	chr1	12200301	12200500	+	0	NA	intron (NM_001066, intron 8 of 9)	intron (NM_001066, intron 8 of 9)	8687	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
161443	chr3	42080271	42081180	+	0	NA	Intergenic	Intergenic	-6475	NM_001349245	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
34223	chr10	129966871	129967230	+	0	NA	Intergenic	CpG-3521	-2776	NM_001375390	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
234017	chrX	3706371	3707050	+	0	NA	intron (NM_005044, intron 1 of 8)	intron (NM_005044, intron 1 of 8)	6939	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
108959	chr18	79520951	79521050	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-58282	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
238957	chrX	155069871	155070230	+	0	NA	intron (NM_001018025, intron 1 of 4)	AmnSINE1|SINE|5S-Deu-L2	1086	NM_001018025	4515		NM_014221	ENSG00000214827	MTCP1	P13MTCP1|TCL1C|p8MTCP1	mature T cell proliferation 1	protein-coding
81573	chr16	9137901	9138100	+	0	NA	Intergenic	AluSz|SINE|Alu	46356	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
195392	chr6	36759051	36759900	+	0	NA	intron (NM_001376889, intron 13 of 21)	L2a|LINE|L2	-2066	NM_001314018	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
104019	chr17	80118671	80119030	+	0	NA	intron (NM_000152, intron 19 of 19)	intron (NM_000152, intron 19 of 19)	17269	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
32762	chr10	104327771	104328280	+	0	NA	intron (NM_001272013, intron 1 of 1)	intron (NM_001272013, intron 1 of 1)	967	NM_001272012	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
43857	chr11	88301251	88302230	+	0	NA	intron (NM_001814, intron 4 of 6)	intron (NM_001814, intron 4 of 6)	35996	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
42337	chr11	68501721	68501980	+	0	NA	intron (NM_001352362, intron 2 of 24)	L2b|LINE|L2	41098	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
165626	chr3	101721771	101721930	+	0	NA	Intergenic	(TTCTT)n|Simple_repeat|Simple_repeat	-2764	NM_024548	79598		NM_024548	ENSG00000182504	CEP97	2810403B08Rik|LRRIQ2	centrosomal protein 97	protein-coding
73556	chr15	44287751	44289480	+	0	NA	promoter-TSS (NR_157849)	promoter-TSS (NR_157849)	-104	NR_157849	113201		NM_138423	ENSG00000166734	GOLM2	CASC4|H63	golgi membrane protein 2	protein-coding
77754	chr15	85755821	85756180	+	0	NA	intron (NR_120366, intron 3 of 5)	intron (NR_120366, intron 3 of 5)	2725	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
51869	chr12	53487801	53488330	+	0	NA	intron (NM_006301, intron 1 of 14)	intron (NM_006301, intron 1 of 14)	11393	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
55861	chr12	109378601	109378800	+	0	NA	Intergenic	Intergenic	-10019	NM_001101421	283446		NM_173597	ENSG00000174527	MYO1H	CCHS2	myosin IH	protein-coding
80968	chr16	3882851	3883730	+	0	NA	Intergenic	Intergenic	-2577	NM_004380	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
197682	chr6	85597071	85597500	+	0	NA	Intergenic	Intergenic	-3129	NM_001350536	57231		NM_020468	ENSG00000135317	SNX14	RGS-PX2|SCAR20	sorting nexin 14	protein-coding
112207	chr19	5689021	5689400	+	0	NA	TTS (NM_198708)	TTS (NM_198708)	-1085	NM_033643	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
174555	chr4	40213931	40214700	+	0	NA	intron (NM_001278361, intron 2 of 3)	intron (NM_001278361, intron 2 of 3)	17284	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
35836	chr11	2300031	2301000	+	0	NA	intron (NR_138249, intron 1 of 2)	intron (NR_138249, intron 1 of 2)	1403	NM_001329958	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
221492	chr8	124525851	124526550	+	0	NA	intron (NM_032026, intron 1 of 11)	LTR56|LTR|ERV1	12885	NM_032026	83940		NM_032026	ENSG00000147687	TATDN1	CDA11	TatD DNase domain containing 1	protein-coding
125577	chr2	16626471	16626830	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	39184	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
238607	chrX	153931151	153931450	+	0	NA	intron (NM_001256119, intron 5 of 6)	intron (NM_001256119, intron 5 of 6)	3737	NM_001256119	8260		NM_003491	ENSG00000102030	NAA10	ARD1|ARD1A|ARD1P|DXS707|LZMS|MAA|MCOPS1|NATD|OGDNS|TE2|hARD1	N-alpha-acetyltransferase 10, NatA catalytic subunit	protein-coding
108609	chr18	75247701	75248380	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	37243	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
156184	chr22	40247821	40248680	+	0	NA	intron (NM_015088, intron 2 of 20)	intron (NM_015088, intron 2 of 20)	70325	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
181397	chr5	40686071	40686230	+	0	NA	intron (NM_000958, intron 2 of 2)	intron (NM_000958, intron 2 of 2)	6235	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
179375	chr4	183499201	183499800	+	0	NA	intron (NR_033995, intron 1 of 2)	intron (NR_033995, intron 1 of 2)	5015	NR_033995	389247		NR_033995		ING2-DT	-	ING2 divergent transcript	ncRNA
21445	chr1	205458851	205459180	+	0	NA	intron (NR_148934, intron 2 of 2)	intron (NR_148934, intron 2 of 2)	-2929	NR_103783								
218260	chr8	42178971	42179130	+	0	NA	exon (NM_000930, exon 13 of 14)	exon (NM_000930, exon 13 of 14)	25987	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
166025	chr3	108388601	108389330	+	0	NA	intron (NM_014981, intron 39 of 41)	intron (NM_014981, intron 39 of 41)	77180	NM_001282557	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
96893	chr17	42118351	42119050	+	0	NA	intron (NM_001376227, intron 6 of 17)	MIRc|SINE|MIR	2667	NM_021078	2648		NM_021078	ENSG00000108773	KAT2A	GCN5|GCN5L2|PCAF-b|hGCN5	lysine acetyltransferase 2A	protein-coding
159169	chr3	12809921	12811300	+	0	NA	intron (NM_012298, intron 3 of 12)	intron (NM_012298, intron 3 of 12)	13930	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
179840	chr5	483321	483880	+	0	NA	intron (NM_001284351, intron 5 of 16)	CpG-21792	10364	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
6029	chr1	27109901	27110150	+	0	NA	intron (NR_046474, intron 1 of 10)	MIR|SINE|MIR	45100	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
212004	chr7	114469051	114469150	+	0	NA	intron (NM_148900, intron 2 of 17)	intron (NM_148900, intron 2 of 17)	42598	NM_001172767	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
223	chr1	840571	840930	+	0	NA	intron (NR_047524, intron 2 of 3)	intron (NR_047524, intron 2 of 3)	12952	NR_047525	643837		NR_015368	ENSG00000228794	LINC01128	-	long intergenic non-protein coding RNA 1128	ncRNA
204912	chr7	6158651	6159030	+	0	NA	intron (NM_032172, intron 16 of 17)	intron (NM_032172, intron 16 of 17)	13297	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
222051	chr8	130278901	130279700	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	17233	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
96922	chr17	42152401	42152700	+	0	NA	intron (NM_201434, intron 1 of 6)	AluSx|SINE|Alu	2439	NM_201434	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
64852	chr14	35222871	35223450	+	0	NA	intron (NM_001256678, intron 4 of 6)	L3b|LINE|CR1	-55398	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
208052	chr7	56051241	56052500	+	0	NA	promoter-TSS (NM_001370504)	promoter-TSS (NM_001370504)	105	NM_001762	908		NM_001762	ENSG00000146731	CCT6A	CCT-zeta|CCT-zeta-1|CCT6|Cctz|HTR3|MoDP-2|TCP-1-zeta|TCP20|TCPZ|TTCP20	chaperonin containing TCP1 subunit 6A	protein-coding
212331	chr7	127395021	127395550	+	0	NA	Intergenic	MIR|SINE|MIR	-2577	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
3405	chr1	15757301	15757500	+	0	NA	intron (NM_001350151, intron 1 of 9)	MIRb|SINE|MIR	762	NM_001350151	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
132660	chr2	108742651	108743450	+	0	NA	intron (NM_006267, intron 7 of 28)	AluY|SINE|Alu	23568	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
69230	chr14	92779071	92779430	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-15055	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
201135	chr6	142898571	142898930	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	46426	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
190981	chr6	2992371	2992530	+	0	NA	Intergenic	MER54A|LTR|ERVL	4483	NR_026856	401232		NM_207495		LINC01011	-	long intergenic non-protein coding RNA 1011	ncRNA
39467	chr11	60983971	60984830	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	12720	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
232166	chr9	134162371	134162530	+	0	NA	Intergenic	Intergenic	2114	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
68404	chr14	80977351	80977680	+	0	NA	intron (NM_001142626, intron 1 of 8)	ERV3-16A3_I-int|LTR|ERVL	21894	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
93639	chr17	19176451	19176830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11376	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
204283	chr7	2658471	2658830	+	0	NA	intron (NM_025250, intron 12 of 13)	intron (NM_025250, intron 12 of 13)	-20872	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
183871	chr5	87271251	87271850	+	0	NA	intron (NM_022650, intron 1 of 24)	AluSx1|SINE|Alu	2613	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
56745	chr12	120138201	120138800	+	0	NA	intron (NM_006836, intron 46 of 57)	intron (NM_006836, intron 46 of 57)	16999	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
84068	chr16	29594371	29595880	+	0	NA	promoter-TSS (NR_135305)	promoter-TSS (NR_135305)	-33	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
101707	chr17	68507471	68507830	+	0	NA	intron (NM_001278433, intron 1 of 10)	L1PA10|LINE|L1	-4130	NM_212471	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
54428	chr12	91381671	91382370	+	0	NA	Intergenic	Intergenic	-199203	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
231709	chr9	131733701	131734840	+	0	NA	intron (NM_001377935, intron 1 of 26)	MIRc|SINE|MIR	3177	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
202587	chr6	158699571	158699930	+	0	NA	intron (NM_001318745, intron 3 of 14)	AluSz|SINE|Alu	36347	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
132589	chr2	107830571	107831130	+	0	NA	intron (NM_182588, intron 1 of 22)	intron (NM_182588, intron 1 of 22)	3958	NM_182588	285190		NM_182588	ENSG00000196862	RGPD4	RGP4	RANBP2 like and GRIP domain containing 4	protein-coding
27500	chr10	32277501	32278100	+	0	NA	intron (NR_168510, intron 10 of 14)	AluJb|SINE|Alu	69358	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
177939	chr4	137496471	137496800	+	0	NA	Intergenic	L1HS|LINE|L1	35859	NM_001300828	54510		NM_019035	ENSG00000189184	PCDH18	PCDH68L	protocadherin 18	protein-coding
162916	chr3	49414801	49415000	+	0	NA	3' UTR (NM_022171, exon 3 of 3)	3' UTR (NM_022171, exon 3 of 3)	2694	NM_022171	6988		NM_022171	ENSG00000145022	TCTA	-	T cell leukemia translocation altered	protein-coding
134214	chr2	134666901	134667300	+	0	NA	intron (NM_030923, intron 2 of 7)	MARNA|DNA|TcMar-Mariner	51900	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
170445	chr3	185907021	185907650	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	30679	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
202652	chr6	158773601	158774430	+	0	NA	intron (NM_003379, intron 7 of 12)	intron (NM_003379, intron 7 of 12)	-9262	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
228651	chr9	107243771	107244000	+	0	NA	Intergenic	Intergenic	-39394	NM_002874	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
218604	chr8	56006201	56006830	+	0	NA	intron (NM_002350, intron 12 of 12)	intron (NM_002350, intron 12 of 12)	67386	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
88038	chr16	81427201	81427700	+	0	NA	Intergenic	Intergenic	-17720	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
15904	chr1	151608071	151608230	+	0	NA	Intergenic	AluY|SINE|Alu	-3900	NM_001330723	81609		NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin 27	protein-coding
219395	chr8	70576851	70577330	+	0	NA	intron (NM_001317804, intron 11 of 11)	MER52A|LTR|ERV1	30579	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
207735	chr7	48086001	48086200	+	0	NA	Intergenic	Intergenic	-2503	NM_001287426	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
91546	chr17	5032971	5033530	+	0	NA	intron (NM_001104577, intron 4 of 4)	intron (NM_001104577, intron 4 of 4)	2176	NM_017986	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
132204	chr2	102007001	102007200	+	0	NA	intron (NR_048564, intron 1 of 8)	MLT1H|LTR|ERVL-MaLR	8139	NR_048564	7850		NM_004633	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor type 2	protein-coding
164906	chr3	71129401	71130000	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	886	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
94571	chr17	29626501	29626700	+	0	NA	3' UTR (NM_001282129, exon 16 of 16)	3' UTR (NM_001282129, exon 16 of 16)	-5177	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
81322	chr16	4716221	4716680	+	0	NA	intron (NM_133450, intron 6 of 17)	intron (NM_133450, intron 6 of 17)	17821	NM_001324130	124401		NM_133450	ENSG00000168096	ANKS3	-	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding
92142	chr17	7641221	7641930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-5052	NM_001303263	482		NM_001678	ENSG00000129244	ATP1B2	AMOG	ATPase Na+/K+ transporting subunit beta 2	protein-coding
5352	chr1	25328951	25329280	+	0	NA	exon (NM_001282870, exon 9 of 9)	exon (NM_001282870, exon 9 of 9)	9139	NM_001321772	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
138060	chr2	201652601	201652800	+	0	NA	intron (NM_033066, intron 18 of 21)	LTR78|LTR|ERV1	-9197	NM_001044385	65062		NM_152388	ENSG00000155755	TMEM237	ALS2CR4|JBTS14	transmembrane protein 237	protein-coding
26650	chr10	22574871	22575250	+	0	NA	intron (NM_001330062, intron 4 of 9)	MIRb|SINE|MIR	-137131	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
60514	chr13	41350051	41351000	+	0	NA	intron (NM_024561, intron 9 of 19)	AluYm1|SINE|Alu	-38487	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
39784	chr11	61950371	61951130	+	0	NA	intron (NM_001139443, intron 1 of 8)	L2a|LINE|L2	399	NM_004183	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
218954	chr8	61013921	61014700	+	0	NA	Intergenic	Intergenic	-46562	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
116308	chr19	17787551	17787850	+	0	NA	non-coding (NR_169219, exon 28 of 29)	non-coding (NR_169219, exon 28 of 29)	-7438	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
228901	chr9	112866951	112867050	+	0	NA	intron (NM_001012994, intron 8 of 8)	intron (NM_001012994, intron 8 of 8)	23876	NM_033051	57864		NM_033051	ENSG00000119457	SLC46A2	Ly110|TSCOT	solute carrier family 46 member 2	protein-coding
214014	chr7	143256171	143257030	+	0	NA	intron (NR_133932, intron 2 of 2)	MER54B|LTR|ERVL	-6829	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
202902	chr6	160012921	160013580	+	0	NA	intron (NM_000876, intron 4 of 47)	MER58C|DNA|hAT-Charlie	-5586	NR_047514	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
212885	chr7	130879001	130879400	+	0	NA	intron (NR_110473, intron 3 of 3)	intron (NR_110473, intron 3 of 3)	-1661	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
120966	chr19	45710801	45711130	+	0	NA	3' UTR (NM_001080469, exon 2 of 2)	3' UTR (NM_001080469, exon 2 of 2)	4313	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
175525	chr4	74431251	74431350	+	0	NA	Intergenic	Intergenic	-13836	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
141697	chr2	241819821	241820080	+	0	NA	Intergenic	Intergenic	8554	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
164656	chr3	66582551	66583230	+	0	NA	Intergenic	Intergenic	-81769	NM_001377345	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
98819	chr17	48372901	48373880	+	0	NA	intron (NM_001075099, intron 2 of 12)	THE1D|LTR|ERVL-MaLR	56824	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
68698	chr14	90408671	90409300	+	0	NA	TTS (NM_001363670)	TTS (NM_001363670)	10735	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
168178	chr3	140832971	140833130	+	0	NA	Intergenic	L1M7|LINE|L1	-108786	NM_018155	55186		NM_018155	ENSG00000114120	SLC25A36	HHF8|PNC2	solute carrier family 25 member 36	protein-coding
69431	chr14	94123971	94124130	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	5554	NM_032036	83982		NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	interferon alpha inducible protein 27 like 2	protein-coding
237109	chrX	104184771	104184930	+	0	NA	intron (NM_207318, intron 2 of 5)	AluJb|SINE|Alu	18397	NM_207318	139231		NM_207318	ENSG00000123575	FAM199X	CXorf39	family with sequence similarity 199, X-linked	protein-coding
107107	chr18	35059651	35059750	+	0	NA	intron (NR_046177, intron 1 of 6)	L2a|LINE|L2	18287	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
153645	chr22	28794121	28794500	+	0	NA	TTS (NM_001079539)	TTS (NM_001079539)	6262	NM_001079539	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
154297	chr22	31876271	31876430	+	0	NA	intron (NR_146296, intron 37 of 42)	intron (NR_146296, intron 37 of 42)	62104	NM_001302819	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
114217	chr19	11448121	11448380	+	0	NA	exon (NM_001379609, exon 13 of 18)	exon (NM_001379609, exon 13 of 18)	-12468	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
47683	chr12	6361851	6362530	+	0	NA	exon (NM_001038, exon 4 of 13)	exon (NM_001038, exon 4 of 13)	-12970	NM_001270987	4055		NM_002342	ENSG00000111321	LTBR	D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	lymphotoxin beta receptor	protein-coding
230286	chr9	127936761	127940250	+	0	NA	promoter-TSS (NM_003863)	promoter-TSS (NM_003863)	-651	NM_001378436	8818		NM_003863	ENSG00000136908	DPM2	CDG1U	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein-coding
129243	chr2	68363651	68363750	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-1582	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
160348	chr3	27725421	27726050	+	0	NA	Intergenic	Intergenic	-3020	NM_001278183	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
22146	chr1	212040451	212041450	+	0	NA	intron (NM_001286229, intron 1 of 12)	MER44D|DNA|TcMar-Tigger	5202	NM_016448	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
215788	chr8	2175321	2175580	+	0	NA	Intergenic	Intergenic	98861	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
129327	chr2	68737451	68738180	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	2438	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
360	chr1	1019101	1021230	+	0	NA	promoter-TSS (NM_001305275)	promoter-TSS (NM_001305275)	45	NM_198576	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
185119	chr5	119283871	119284880	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	15616	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
21542	chr1	206030621	206030900	+	0	NA	Intergenic	Intergenic	-6865	NM_001910	1510		NM_001910	ENSG00000196188	CTSE	CATE	cathepsin E	protein-coding
121278	chr19	46712471	46712900	+	0	NA	intron (NM_001079881, intron 3 of 18)	intron (NM_001079881, intron 3 of 18)	1635	NM_001079882	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
137438	chr2	196922501	196923150	+	0	NA	intron (NM_001321099, intron 1 of 27)	AluJb|SINE|Alu	3882	NM_001321099	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
166453	chr3	114174621	114174880	+	0	NA	intron (NM_033663, intron 1 of 7)	intron (NM_033663, intron 1 of 7)	4026	NM_001290809	1814		NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
218703	chr8	58582301	58582500	+	0	NA	3' UTR (NM_001330537, exon 10 of 10)	3' UTR (NM_001330537, exon 10 of 10)	29139	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
197557	chr6	79545071	79545230	+	0	NA	Intergenic	Intergenic	-7720	NM_001122769	167691		NM_181714	ENSG00000135338	LCA5	C6orf152	lebercilin LCA5	protein-coding
55201	chr12	101697171	101699050	+	0	NA	exon (NM_020244, exon 1 of 9)	exon (NM_020244, exon 1 of 9)	470	NM_020244	56994		NM_020244	ENSG00000111666	CHPT1	CPT|CPT1	choline phosphotransferase 1	protein-coding
51209	chr12	50530251	50530550	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	25415	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
38010	chr11	35083401	35084680	+	0	NA	Intergenic	Intergenic	53992	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
209638	chr7	77751971	77752680	+	0	NA	intron (NM_198467, intron 3 of 7)	intron (NM_198467, intron 3 of 7)	46109	NM_032936	85025		NM_032936	ENSG00000135211	TMEM60	C7orf35|DC32	transmembrane protein 60	protein-coding
112513	chr19	6479901	6480300	+	0	NA	intron (NM_024898, intron 1 of 22)	intron (NM_024898, intron 1 of 22)	1687	NM_001290331	79958		NM_024898	ENSG00000205744	DENND1C	FAM31C	DENN domain containing 1C	protein-coding
152593	chr22	21289871	21290750	+	0	NA	intron (NR_024583, intron 4 of 6)	intron (NR_024583, intron 4 of 6)	7885	NR_024583	29797		NM_001029950		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin like 8, pseudogene	pseudo
21054	chr1	203274801	203275200	+	0	NA	Intergenic	Intergenic	-12152	NR_117097	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
102009	chr17	74779521	74781280	+	0	NA	intron (NM_017728, intron 2 of 9)	intron (NM_017728, intron 2 of 9)	3901	NM_017728	54868		NM_017728	ENSG00000109066	TMEM104	SLC38A12	transmembrane protein 104	protein-coding
232007	chr9	133357671	133357830	+	0	NA	exon (NM_001278928, exon 3 of 6).2	exon (NM_001278928, exon 3 of 6).2	1200	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
19536	chr1	178532151	178532550	+	0	NA	Intergenic	Intergenic	-10446	NR_033186	400798		NM_207467	ENSG00000213057	C1orf220	-	chromosome 1 putative open reading frame 220	ncRNA
158469	chr22	50687371	50687530	+	0	NA	intron (NM_001372044, intron 11 of 23)	intron (NM_001372044, intron 11 of 23)	14627	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
148799	chr21	8240071	8240800	+	0	NA	intron (NR_003287, intron 1 of 2)	intron (NR_003287, intron 1 of 2)	-9070	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
236322	chrX	68832021	68832450	+	0	NA	intron (NM_004429, intron 1 of 4)	intron (NM_004429, intron 1 of 4)	3214	NM_004429	1947		NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
182793	chr5	68688851	68688950	+	0	NA	Intergenic	MIR|SINE|MIR	341027	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
36104	chr11	3053571	3054130	+	0	NA	intron (NR_165428, intron 1 of 22)	intron (NR_165428, intron 1 of 22)	3573	NM_001751	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
79482	chr16	767421	768050	+	0	NA	intron (NM_005823, intron 16 of 17)	CpG-8892	-2448	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
159285	chr3	12972151	12973180	+	0	NA	intron (NM_001134382, intron 1 of 13)	MIR3|SINE|MIR	-4935	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
129570	chr2	69946251	69947450	+	0	NA	Intergenic	Intergenic	15415	NM_152792	151516		NM_152792	ENSG00000244617	ASPRV1	ADLI|MUNO|SASP|SASPase|Taps	aspartic peptidase retroviral like 1	protein-coding
179692	chr4	190091751	190092180	+	0	NA	Intergenic	CpG	26736	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
171151	chr3	195614351	195615250	+	0	NA	Intergenic	Intergenic	-30860	NM_001647	347		NM_001647	ENSG00000189058	APOD	-	apolipoprotein D	protein-coding
126773	chr2	30254571	30255030	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	23266	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
220148	chr8	94944051	94944150	+	0	NA	intron (NM_033285, intron 1 of 3)	intron (NM_033285, intron 1 of 3)	5278	NM_001135733	94241		NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
41998	chr11	67394351	67394680	+	0	NA	intron (NM_004584, intron 5 of 10)	intron (NM_004584, intron 5 of 10)	1210	NM_001243224	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
1266	chr1	2307001	2307600	+	0	NA	3' UTR (NM_003036, exon 7 of 7)	3' UTR (NM_003036, exon 7 of 7)	45361	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
56827	chr12	120226821	120227080	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	23213	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
95608	chr17	37527321	37527680	+	0	NA	intron (NM_001163544, intron 18 of 20).2	intron (NM_001163544, intron 18 of 20).2	37609	NM_007026	11072		NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
61415	chr13	51806071	51806230	+	0	NA	Intergenic	MIR|SINE|MIR	-1987	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
73748	chr15	45377851	45379050	+	0	NA	promoter-TSS (NM_001482)	promoter-TSS (NM_001482)	94	NM_001482	2628		NM_001482	ENSG00000171766	GATM	AGAT|AT|CCDS3|FRTS|FRTS1|RFS	glycine amidinotransferase	protein-coding
445	chr1	1120951	1121280	+	0	NA	Intergenic	Intergenic	-5026	NM_001330306	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
154122	chr22	31150751	31150850	+	0	NA	Intergenic	AluJr|SINE|Alu	9319	NR_037496	100500901		NR_037496	ENSG00000264141	MIR3928	mir-3928	microRNA 3928	ncRNA
9232	chr1	45750251	45751300	+	0	NA	promoter-TSS (NM_005897)	promoter-TSS (NM_005897)	38	NM_001145349	3652		NM_005897	ENSG00000197429	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
37555	chr11	18719521	18719850	+	0	NA	intron (NR_160413, intron 7 of 20)	intron (NR_160413, intron 7 of 20)	6503	NM_173588	283284		NM_173588	ENSG00000179057	IGSF22	IGFN2	immunoglobulin superfamily member 22	protein-coding
8114	chr1	39206021	39206350	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	122018	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
196076	chr6	42277771	42278630	+	0	NA	intron (NM_033502, intron 4 of 17)	intron (NM_033502, intron 4 of 17)	-60339	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
102303	chr17	75348371	75348780	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	57103	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
100005	chr17	57868001	57868730	+	0	NA	intron (NM_001292025, intron 7 of 10)	intron (NM_001292025, intron 7 of 10)	-18321	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
123784	chr19	55117001	55119580	+	0	NA	promoter-TSS (NM_001271618)	promoter-TSS (NM_001271618)	-653	NM_001271618	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
4760	chr1	23523701	23524100	+	0	NA	intron (NM_004091, intron 2 of 6)	AluSz|SINE|Alu	1970	NR_110799	101928163		NR_110799		LOC101928163	-	uncharacterized LOC101928163	ncRNA
59575	chr13	27441271	27441580	+	0	NA	intron (NM_001166263, intron 2 of 5)	intron (NM_001166263, intron 2 of 5)	8764	NM_001166262	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
67780	chr14	73746471	73747030	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-11997	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
14360	chr1	144045901	144046880	+	0	NA	intron (NR_120535, intron 3 of 7)	intron (NR_120535, intron 3 of 7)	-72871	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
172449	chr4	1980601	1980900	+	0	NA	3' UTR (NM_133331, exon 23 of 23)	3' UTR (NM_133331, exon 23 of 23)	5727	NR_030641	100126332		NR_030641	ENSG00000284587	MIR943	MIRN943|hsa-mir-943	microRNA 943	ncRNA
24537	chr1	244848321	244848600	+	0	NA	Intergenic	Intergenic	5757	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
126674	chr2	29311071	29311230	+	0	NA	intron (NM_004304, intron 8 of 28)	intron (NM_004304, intron 8 of 28)	-87250	NM_001353765	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
73302	chr15	41880171	41880930	+	0	NA	intron (NM_016642, intron 13 of 67)	intron (NM_016642, intron 13 of 67)	-12227	NR_135681	105370792		NR_135681	ENSG00000174171	LOC105370792	-	uncharacterized LOC105370792	ncRNA
195675	chr6	38168271	38168630	+	0	NA	TTS (NM_001099272)	TTS (NM_001099272)	-313146	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
130316	chr2	84968171	84968630	+	0	NA	Intergenic	Intergenic	-2761	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
73971	chr15	51877721	51878330	+	0	NA	intron (NM_014547, intron 3 of 9)	L1MEc|LINE|L1	46095	NR_109775	100422556		NR_109775		LOC100422556	-	LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene	pseudo
44796	chr11	113474371	113475080	+	0	NA	intron (NM_016574, intron 1 of 6)	CpG	554	NM_016574	1813		NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
62776	chr13	108346471	108346630	+	0	NA	Intergenic	Intergenic	76832	NM_006573	10673		NM_006573	ENSG00000102524	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4	TNF superfamily member 13b	protein-coding
97350	chr17	43291871	43292100	+	0	NA	Intergenic	MER96B|DNA|hAT-Tip100	4630	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
162812	chr3	49126421	49126880	+	0	NA	intron (NM_002292, intron 15 of 31)	intron (NM_002292, intron 15 of 31)	-5712	NM_001351105	10869		NM_006677	ENSG00000172046	USP19	ZMYND9	ubiquitin specific peptidase 19	protein-coding
182694	chr5	68210571	68210730	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-5106	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
214387	chr7	149777221	149777900	+	0	NA	intron (NR_163594, intron 4 of 102)	intron (NR_163594, intron 4 of 102)	1518	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
124350	chr19	58339221	58339480	+	0	NA	3' UTR (NM_181846, exon 3 of 3)	3' UTR (NM_181846, exon 3 of 3)	4662	NR_106864	102465484		NR_106864	ENSG00000277588	MIR6806	hsa-mir-6806	microRNA 6806	ncRNA
143858	chr20	32538201	32539210	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	28746	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
210889	chr7	101170971	101171430	+	0	NA	3' UTR (NM_198571, exon 4 of 4)	3' UTR (NM_198571, exon 4 of 4)	-5631	NM_003378	7425		NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
120998	chr19	45769001	45769800	+	0	NA	promoter-TSS (NM_175875)	promoter-TSS (NM_175875)	-148	NM_175875	147912		NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
106518	chr18	21077201	21077680	+	0	NA	intron (NM_005406, intron 1 of 32)	L1MB4|LINE|L1	34373	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
123683	chr19	55007851	55008150	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	30264	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
175847	chr4	78775171	78777950	+	0	NA	exon (NM_198892, exon 1 of 16)	exon (NM_198892, exon 1 of 16)	182	NM_198892	55589		NM_017593	ENSG00000138756	BMP2K	BIKE|HRIHFB2017	BMP2 inducible kinase	protein-coding
12089	chr1	99786751	99787050	+	0	NA	Intergenic	Intergenic	-20265	NM_001361041	391059		NM_001013660	ENSG00000156869	FRRS1	SDFR2|SDR2	ferric chelate reductase 1	protein-coding
137867	chr2	200829271	200829430	+	0	NA	Intergenic	Intergenic	16964	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
14395	chr1	144245651	144246080	+	0	NA	intron (NR_027356, intron 1 of 2).2	intron (NR_027356, intron 1 of 2).2	2340	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
207869	chr7	50371171	50372250	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	52662	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
204816	chr7	5685471	5685630	+	0	NA	intron (NM_207111, intron 13 of 16)	L2|LINE|L2	-5089	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
233578	chrX	305101	306330	+	0	NA	intron (NM_012227, intron 9 of 9)	AluSc8|SINE|Alu	13104	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
228378	chr9	99111371	99112050	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	6597	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
116971	chr19	18870551	18871650	+	0	NA	intron (NM_021267, intron 6 of 7)	AluJo|SINE|Alu	25058	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
221937	chr8	129885201	129886400	+	0	NA	intron (NM_001353311, intron 4 of 13)	intron (NM_001353311, intron 4 of 13)	54011	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
103762	chr17	78974951	78975450	+	0	NA	intron (NM_005567, intron 3 of 5)	intron (NM_005567, intron 3 of 5)	4723	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
136923	chr2	189783501	189785280	+	0	NA	promoter-TSS (NM_000534)	promoter-TSS (NM_000534)	-51	NM_016467	94101		NM_016467	ENSG00000128699	ORMDL1	-	ORMDL sphingolipid biosynthesis regulator 1	protein-coding
149005	chr21	14525401	14525600	+	0	NA	intron (NM_001286523, intron 1 of 8)	L1MC5|LINE|L1	20815	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
72787	chr15	40024451	40024550	+	0	NA	intron (NM_001013703, intron 32 of 38)	AluSg|SINE|Alu	14681	NM_003134	6727		NM_003134	ENSG00000140319	SRP14	ALURBP	signal recognition particle 14	protein-coding
52117	chr12	54197101	54197300	+	0	NA	Intergenic	Intergenic	-8206	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
204531	chr7	4806801	4808250	+	0	NA	intron (NM_018059, intron 9 of 14)	(CTCC)n|Simple_repeat|Simple_repeat	-18886	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
94620	chr17	29890971	29891530	+	0	NA	intron (NM_001282129, intron 1 of 15)	MER5A|DNA|hAT-Charlie	-38653	NM_001145053	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
114030	chr19	10926251	10926800	+	0	NA	intron (NM_001321439, intron 4 of 9)	AluY|SINE|Alu	2114	NM_024029	78992		NM_024029	ENSG00000130733	YIPF2	FinGER2|YIPFbeta3B|Yip5C	Yip1 domain family member 2	protein-coding
62256	chr13	98560851	98561150	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	16107	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
52319	chr12	54957951	54958480	+	0	NA	intron (NR_147064, intron 10 of 11)	intron (NR_147064, intron 10 of 11)	15517	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
196343	chr6	43179821	43180280	+	0	NA	3' UTR (NM_003131, exon 7 of 7)	3' UTR (NM_003131, exon 7 of 7)	-2146	NM_015089	23113		NM_015089	ENSG00000112659	CUL9	H7AP1|PARC	cullin 9	protein-coding
233986	chrX	2714651	2714980	+	0	NA	intron (NM_001321369, intron 2 of 8)	Tigger1a_Art|DNA|TcMar-Tigger	23520	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
214881	chr7	151405601	151406000	+	0	NA	intron (NM_001284261, intron 1 of 4)	intron (NM_001284261, intron 1 of 4)	-3361	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
189106	chr5	170329871	170330230	+	0	NA	Intergenic	L2a|LINE|L2	-1343	NR_026945	257358		NM_001025454	ENSG00000235172	LINC01366	-	long intergenic non-protein coding RNA 1366	ncRNA
190458	chr5	180071321	180072600	+	0	NA	promoter-TSS (NM_018434)	promoter-TSS (NM_018434)	-201	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
200539	chr6	136256771	136257600	+	0	NA	3' UTR (NM_001077440, exon 12 of 12)	3' UTR (NM_001077440, exon 12 of 12)	-6874	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
130537	chr2	85653001	85653200	+	0	NA	Intergenic	AluJb|SINE|Alu	15099	NM_001367281	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
46660	chr11	128711071	128711230	+	0	NA	intron (NM_001271010, intron 1 of 9)	MER3|DNA|hAT-Charlie	-15127	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
226626	chr9	73178921	73179180	+	0	NA	Intergenic	Intergenic	27185	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
184242	chr5	96662701	96663680	+	0	NA	intron (NM_001375317, intron 1 of 30)	CpG	165	NM_001330629	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
196227	chr6	42794271	42794430	+	0	NA	intron (NM_001318819, intron 2 of 13)	intron (NM_001318819, intron 2 of 13)	10854	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
55886	chr12	109715451	109716800	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	2300	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
126120	chr2	26038551	26039050	+	0	NA	intron (NM_016131, intron 1 of 5)	AluY|SINE|Alu	4716	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
231598	chr9	131553951	131554300	+	0	NA	intron (NM_001365666, intron 1 of 3)	intron (NM_001365666, intron 1 of 3)	8602	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
115097	chr19	14276521	14276980	+	0	NA	Intergenic	AluSz|SINE|Alu	-56993	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
155017	chr22	37419471	37420950	+	0	NA	intron (NM_052906, intron 1 of 2)	CpG	7260	NR_110512	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
10717	chr1	75787551	75788350	+	0	NA	promoter-TSS (NR_002749)	promoter-TSS (NR_002749)	61	NR_002749	26805		NR_002749	ENSG00000207241	SNORD45A	RNU45A|U45a	small nucleolar RNA, C/D box 45A	snoRNA
77122	chr15	78979551	78979900	+	0	NA	intron (NR_148998, intron 1 of 1)	intron (NR_148998, intron 1 of 1)	836	NR_148998	100129540		NR_148998	ENSG00000177699	LOC100129540	-	uncharacterized LOC100129540	ncRNA
70019	chr14	100087421	100087680	+	0	NA	intron (NM_016337, intron 2 of 13)	AluJb|SINE|Alu	21964	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
175341	chr4	68437351	68437750	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-9913	NM_014058	28983		NM_014058	ENSG00000087128	TMPRSS11E	DESC1|TMPRSS11E2	transmembrane serine protease 11E	protein-coding
137361	chr2	196161201	196161850	+	0	NA	intron (NM_004226, intron 2 of 7)	AluSx3|SINE|Alu	10053	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
46695	chr11	128771921	128772180	+	0	NA	intron (NM_001167681, intron 4 of 9)	(CA)n|Simple_repeat|Simple_repeat	70419	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
217630	chr8	30055851	30056150	+	0	NA	Intergenic	Intergenic	27064	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
117136	chr19	19296871	19297230	+	0	NA	exon (NM_172231, exon 8 of 14)	exon (NM_172231, exon 8 of 14)	23459	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
205410	chr7	16564101	16564300	+	0	NA	intron (NM_001195280, intron 5 of 8)	intron (NM_001195280, intron 5 of 8)	37375	NM_001195280	100506049		NM_001195280	ENSG00000205858	LRRC72	CFAP279|FAP279	leucine rich repeat containing 72	protein-coding
215294	chr7	157279171	157280280	+	0	NA	Intergenic	CpG	-57279	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
58701	chr12	132560601	132561930	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-20732	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
81092	chr16	4353971	4354650	+	0	NA	TTS (NM_001201472).2	TTS (NM_001201472).2	-2989	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
187593	chr5	142863971	142864600	+	0	NA	intron (NR_046680, intron 3 of 5)	intron (NR_046680, intron 3 of 5)	4625	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
156352	chr22	40864151	40864450	+	0	NA	intron (NM_022098, intron 1 of 9)	MER41A|LTR|ERV1	-2187	NM_145174	150353		NM_145174	ENSG00000172404	DNAJB7	DJ5|HSC3	DnaJ heat shock protein family (Hsp40) member B7	protein-coding
32996	chr10	110546951	110547830	+	0	NA	Intergenic	Intergenic	-20305	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
61632	chr13	73803571	73803730	+	0	NA	intron (NM_007249, intron 5 of 7)	L2a|LINE|L2	239406	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
132810	chr2	110499921	110500280	+	0	NA	Intergenic	Intergenic	-27025	NR_038099	100288695		NM_001205288	ENSG00000256671	LIMS4	LIMS3L	LIM zinc finger domain containing 4	protein-coding
123266	chr19	53424871	53425400	+	0	NA	non-coding (NR_146721, exon 5 of 8)	non-coding (NR_146721, exon 5 of 8)	-6839	NR_003148	147804		NM_001010856	ENSG00000293185	TPM3P9	-	tropomyosin 3 pseudogene 9	pseudo
23207	chr1	227558771	227559580	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-4381	NM_001367909	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
74919	chr15	63674571	63674730	+	0	NA	exon (NM_003922, exon 38 of 78)	exon (NM_003922, exon 38 of 78)	-73823	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
211065	chr7	102469671	102470330	+	0	NA	intron (NM_001317721, intron 11 of 14)	intron (NM_001317721, intron 11 of 14)	-1469	NR_039677	100616367		NR_039677	ENSG00000284596	MIR4467	-	microRNA 4467	ncRNA
41064	chr11	65495121	65495380	+	0	NA	Intergenic	AluSx|SINE|Alu	-2488	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
98443	chr17	46922371	46923600	+	0	NA	promoter-TSS (NM_001363851)	promoter-TSS (NM_001363851)	-132	NM_001330252	9570		NM_004287	ENSG00000108433	GOSR2	Bos1|EPM6|GS27|MYOS	golgi SNAP receptor complex member 2	protein-coding
224423	chr9	15271321	15271830	+	0	NA	intron (NM_152574, intron 1 of 19)	MER1B|DNA|hAT-Charlie	-21357	NM_001168342	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
27229	chr10	29385671	29385830	+	0	NA	Intergenic	AluJb|SINE|Alu	-23784	NR_110925	102724316		NR_003930	ENSG00000291093	SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
225025	chr9	33143301	33144400	+	0	NA	intron (NM_001378495, intron 1 of 5)	L4_A_Mam|LINE|RTE-X	-23098	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
6916	chr1	31638351	31638730	+	0	NA	intron (NM_012392, intron 1 of 4)	intron (NM_012392, intron 1 of 4)	6077	NM_001359651	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
234152	chrX	10119101	10119900	+	0	NA	intron (NM_015691, intron 11 of 22)	intron (NM_015691, intron 11 of 22)	-37445	NM_001256944	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
177828	chr4	124711921	124713230	+	0	NA	5' UTR (NM_020337, exon 1 of 5)	5' UTR (NM_020337, exon 1 of 5)	157	NM_020337	57182		NM_020337	ENSG00000151458	ANKRD50	-	ankyrin repeat domain containing 50	protein-coding
16269	chr1	153995071	153995630	+	0	NA	intron (NM_001159484, intron 35 of 37)	intron (NM_001159484, intron 35 of 37)	4588	NM_001030	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
17792	chr1	159790321	159790600	+	0	NA	Intergenic	L2b|LINE|L2	9498	NM_001319659	54935		NM_017823	ENSG00000158716	DUSP23	DUSP25|LDP-3|LDP3|MOSP|VHZ	dual specificity phosphatase 23	protein-coding
129821	chr2	72145901	72146100	+	0	NA	intron (NM_019885, intron 1 of 5)	CpG	1862	NM_001277742	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
192757	chr6	26444101	26444300	+	0	NA	exon (NM_001242803, exon 2 of 6)	exon (NM_001242803, exon 2 of 6)	3696	NM_001242803	10384		NM_006994	ENSG00000111801	BTN3A3	BTF3|BTN3.3	butyrophilin subfamily 3 member A3	protein-coding
230764	chr9	128905451	128905750	+	0	NA	intron (NM_019594, intron 2 of 3)	AluSc|SINE|Alu	-15382	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
66763	chr14	64528451	64529100	+	0	NA	intron (NM_014950, intron 2 of 2)	MIRb|SINE|MIR	11593	NR_110550	102723809		NR_110550	ENSG00000259116	HSPA2-AS1	-	HSPA2 and ZBTB1 antisense RNA 1	ncRNA
5882	chr1	26783801	26784300	+	0	NA	Intergenic	Intergenic	-3004	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
185060	chr5	116068051	116068800	+	0	NA	Intergenic	AluJr4|SINE|Alu	-16600	NM_016144	51397		NM_016144	ENSG00000145781	COMMD10	PTD002	COMM domain containing 10	protein-coding
7734	chr1	36133701	36133900	+	0	NA	Intergenic	Intergenic	-8578	NM_001294347	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
43642	chr11	85627521	85629380	+	0	NA	promoter-TSS (NM_001350396)	promoter-TSS (NM_001350396)	-77	NM_001351274	1740		NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
155230	chr22	37913551	37914050	+	0	NA	intron (NM_033386, intron 3 of 15)	MIR3|SINE|MIR	7503	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
105434	chr17	82890801	82891300	+	0	NA	intron (NM_005993, intron 16 of 38)	intron (NM_005993, intron 16 of 38)	-51028	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
33931	chr10	124609301	124609500	+	0	NA	intron (NM_022126, intron 6 of 6)	AluJb|SINE|Alu	-94628	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
57284	chr12	121638701	121639200	+	0	NA	intron (NM_032790, intron 2 of 2)	intron (NM_032790, intron 2 of 2)	12400	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
145231	chr20	38921771	38922350	+	0	NA	3' UTR (NM_015568, exon 11 of 11)	3' UTR (NM_015568, exon 11 of 11)	-4357	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
168062	chr3	137110301	137110630	+	0	NA	Intergenic	Intergenic	152482	NM_144717	53833		NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
7506	chr1	33367651	33368780	+	0	NA	intron (NM_001330488, intron 5 of 13)	intron (NM_001330488, intron 5 of 13)	17863	NR_125978	101929464		NR_125978	ENSG00000233246	PHC2-AS1	-	PHC2 antisense RNA 1	ncRNA
14025	chr1	120735501	120736180	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	11901	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
146787	chr20	50921951	50922050	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-8984	NR_110007	101927631		NR_110007	ENSG00000259456	ADNP-AS1	-	ADNP antisense RNA 1	ncRNA
123298	chr19	53562451	53562550	+	0	NA	intron (NM_001317116, intron 2 of 4)	AluSq|SINE|Alu	7193	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
147463	chr20	59039351	59039850	+	0	NA	intron (NM_016045, intron 1 of 5)	intron (NM_016045, intron 1 of 5)	3186	NM_001256403	51012		NM_016045	ENSG00000101166	PRELID3B	C20orf45|SLMO2|UPS2|dJ543J19.5	PRELI domain containing 3B	protein-coding
193533	chr6	30595801	30596600	+	0	NA	Intergenic	AluSq2|SINE|Alu	11868	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
157793	chr22	46772951	46773050	+	0	NA	promoter-TSS (NM_001284305)	promoter-TSS (NM_001284305)	-927	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
117713	chr19	29276751	29277480	+	0	NA	Intergenic	MER74A|LTR|ERVL	-63964	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
53966	chr12	74481151	74481450	+	0	NA	Intergenic	Intergenic	-56535	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
93519	chr17	19019821	19020480	+	0	NA	TTS (NM_006613)	TTS (NM_006613)	-15386	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
120612	chr19	45032551	45033100	+	0	NA	intron (NM_006509, intron 8 of 10)	MIRc|SINE|MIR	-6220	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
60135	chr13	39612071	39612250	+	0	NA	Intergenic	Intergenic	-8967	NM_005780	10186		NM_005780	ENSG00000183722	LHFPL6	LHFP	LHFPL tetraspan subfamily member 6	protein-coding
172476	chr4	2062101	2062380	+	0	NA	intron (NM_178557, intron 2 of 2)	intron (NM_178557, intron 2 of 2)	2913	NM_178557	339983		NM_178557	ENSG00000185818	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8 like	protein-coding
232834	chr9	136743071	136743430	+	0	NA	promoter-TSS (NM_001001712)	promoter-TSS (NM_001001712)	-310	NM_001001712	414332		NM_001001712	ENSG00000187922	LCN10	-	lipocalin 10	protein-coding
17981	chr1	160485221	160485480	+	0	NA	3' UTR (NM_052931, exon 8 of 8)	3' UTR (NM_052931, exon 8 of 8)	37905	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
127911	chr2	46303101	46303350	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	5818	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
48932	chr12	12713251	12713600	+	0	NA	Intergenic	L2a|LINE|L2	-3943	NM_004064	1027		NM_004064	ENSG00000111276	CDKN1B	CDKN4|KIP1|MEN1B|MEN4|P27KIP1	cyclin dependent kinase inhibitor 1B	protein-coding
179918	chr5	710351	710650	+	0	NA	non-coding (NR_147096, exon 14 of 14)	non-coding (NR_147096, exon 14 of 14)	-17148	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
230663	chr9	128708671	128709030	+	0	NA	intron (NM_001317926, intron 6 of 21)	AluSz|SINE|Alu	6347	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
138119	chr2	202288721	202289180	+	0	NA	intron (NM_015934, intron 6 of 14)	AluSx3|SINE|Alu	-2367	NR_003694	100113392		NR_003694	ENSG00000271852	SNORD11B	-	small nucleolar RNA, C/D box 11B	snoRNA
71681	chr15	20021421	20021680	+	0	NA	Intergenic	Intergenic	-261194	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
208117	chr7	58694051	58694150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1243923	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
75689	chr15	67833671	67834170	+	0	NA	TTS (NR_120345)	TTS (NR_120345)	4959	NR_120345	101929076		NR_120345	ENSG00000245719	SKOR1-AS1	-	SKOR1 antisense RNA 1	ncRNA
146619	chr20	50169221	50170150	+	0	NA	Intergenic	Intergenic	-2885	NR_109943	101927541		NR_109943	ENSG00000231742	LINC01273	-	long intergenic non-protein coding RNA 1273	ncRNA
231566	chr9	131494271	131495050	+	0	NA	intron (NM_013318, intron 31 of 31)	intron (NM_013318, intron 31 of 31)	4174	NR_002914	26786		NR_002914	ENSG00000235284	SNORD62A	RNU62|U62|U62A	small nucleolar RNA, C/D box 62A	snoRNA
239290	chrY	14328771	14328930	+	0	NA	Intergenic	Intergenic	-193766	NM_001365591	22829		NM_014893	ENSG00000165246	NLGN4Y	HNL4Y	neuroligin 4 Y-linked	protein-coding
202535	chr6	158629251	158629880	+	0	NA	intron (NR_164859, intron 14 of 16)	intron (NR_164859, intron 14 of 16)	15178	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
4924	chr1	23908901	23909580	+	0	NA	intron (NM_001841, intron 1 of 1)	intron (NM_001841, intron 1 of 1)	4122	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
143677	chr20	32031051	32032030	+	0	NA	3' UTR (NM_001365692, exon 10 of 10)	3' UTR (NM_001365692, exon 10 of 10)	-20702	NM_001172129	3055		NM_002110	ENSG00000101336	HCK	AIPCV|JTK9|p59Hck|p61Hck	HCK proto-oncogene, Src family tyrosine kinase	protein-coding
155384	chr22	38312071	38312650	+	0	NA	intron (NM_152221, intron 2 of 10)	AluJb|SINE|Alu	5073	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
196049	chr6	42084151	42084250	+	0	NA	TTS (NM_138572)	TTS (NM_138572)	33676	NM_138572	129685		NM_138572	ENSG00000137413	TAF8	II|NEDMLHB|TAF|TAF(II)43|TAFII-43|TAFII43|TBN	TATA-box binding protein associated factor 8	protein-coding
117614	chr19	23075151	23075250	+	0	NA	Intergenic	CpG	-13935	NR_110745	101929144		NR_110745	ENSG00000261615	LINC01858	-	long intergenic non-protein coding RNA 1858	ncRNA
9209	chr1	45622821	45623800	+	0	NA	exon (NM_001190182, exon 3 of 13)	exon (NM_001190182, exon 3 of 13)	744	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
157694	chr22	46358871	46359230	+	0	NA	Intergenic	Intergenic	23336	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
10925	chr1	84122801	84123130	+	0	NA	intron (NM_207578, intron 1 of 8)	intron (NM_207578, intron 1 of 8)	-21306	NM_182948	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
119483	chr19	40450751	40450850	+	0	NA	intron (NM_000713, intron 4 of 4)	AluJo|SINE|Alu	-6465	NM_203344	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
38641	chr11	46364971	46365130	+	0	NA	intron (NM_001105540, intron 1 of 31)	intron (NM_001105540, intron 1 of 31)	3444	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
82704	chr16	20799601	20799830	+	0	NA	intron (NM_080663, intron 7 of 10)	intron (NM_080663, intron 7 of 10)	6757	NM_080663	112479		NM_080663	ENSG00000196678	ERI2	EXOD1|ZGRF5	ERI1 exoribonuclease family member 2	protein-coding
196192	chr6	42726171	42727630	+	0	NA	promoter-TSS (NR_037141)	promoter-TSS (NR_037141)	-676	NR_037141	442211		NR_037141		ATP6V0CP3	-	ATPase H+ transporting V0 subunit c pseudogene 3	pseudo
131189	chr2	94998201	94998400	+	0	NA	Intergenic	CpG	-27355	NM_022440	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
64647	chr14	31378101	31378450	+	0	NA	intron (NM_015473, intron 11 of 35)	MER58B|DNA|hAT-Charlie	42275	NM_015473	25938		NM_015473	ENSG00000129493	HEATR5A	C14orf125|p200b	HEAT repeat containing 5A	protein-coding
201187	chr6	143136271	143136730	+	0	NA	intron (NM_001366358, intron 1 of 5)	intron (NM_001366358, intron 1 of 5)	10361	NM_001366358	51390		NM_016108	ENSG00000146416	AIG1	AIG-1|dJ95L4.1	androgen induced 1	protein-coding
19474	chr1	174987251	174987350	+	0	NA	intron (NM_001366454, intron 8 of 8)	AluSc|SINE|Alu	-12135	NM_001007214	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
47644	chr12	6276951	6277450	+	0	NA	Intergenic	Intergenic	-33132	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
56628	chr12	118330451	118330550	+	0	NA	intron (NM_001346487, intron 1 of 20)	intron (NM_001346487, intron 1 of 20)	29205	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
125708	chr2	20442001	20442500	+	0	NA	Intergenic	AluY|SINE|Alu	-4824	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
95807	chr17	38735121	38735780	+	0	NA	exon (NM_001369615, exon 10 of 10)	exon (NM_001369615, exon 10 of 10)	5109	NM_001136498	284106		NM_001136498	ENSG00000277972	CISD3	MiNT|Miner2	CDGSH iron sulfur domain 3	protein-coding
59069	chr13	20890871	20891260	+	0	NA	intron (NM_001372061, intron 1 of 19)	AluSp|SINE|Alu	11709	NM_001372061	64328		NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
140543	chr2	233255271	233255430	+	0	NA	intron (NM_198890, intron 1 of 13).2	L2|LINE|L2	3677	NM_017974	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
89429	chr16	88938651	88939150	+	0	NA	promoter-TSS (NR_168285)	promoter-TSS (NR_168285)	-371	NR_168285	100129697		NM_001290330		LOC100129697	-	uncharacterized LOC100129697	ncRNA
123032	chr19	51137871	51138230	+	0	NA	Intergenic	Intergenic	-4251	NM_001277201	27036		NM_014385	ENSG00000168995	SIGLEC7	AIRM-1|AIRM1|CD328|CDw328|D-siglec|QA79|SIGLEC-7|SIGLEC19P|SIGLECP2|p75|p75/AIRM1	sialic acid binding Ig like lectin 7	protein-coding
122661	chr19	49865101	49865780	+	0	NA	intron (NM_007254, intron 3 of 16)	intron (NM_007254, intron 3 of 16)	2136	NM_007254	11284		NM_007254	ENSG00000039650	PNKP	AOA4|CMT2B2|EIEE10|MCSZ|PNK	polynucleotide kinase 3'-phosphatase	protein-coding
108662	chr18	76803751	76804170	+	0	NA	intron (NR_040024, intron 2 of 2)	intron (NR_040024, intron 2 of 2)	18335	NR_040024	100131655		NR_040024	ENSG00000264278	ZNF236-DT	-	ZNF236 divergent transcript	ncRNA
128783	chr2	62229071	62229450	+	0	NA	Intergenic	Intergenic	13739	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
187020	chr5	139762651	139762950	+	0	NA	Intergenic	Intergenic	-16577	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
191016	chr6	3091351	3091880	+	0	NA	intron (NM_001354931, intron 6 of 9)	CpG	23121	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
113352	chr19	8664201	8665050	+	0	NA	intron (NM_001378601, intron 1 of 2)	intron (NM_001378601, intron 1 of 2)	9048	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
141646	chr2	241734071	241736050	+	0	NA	intron (NM_001287249, intron 1 of 8)	CpG	430	NM_152783	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
85755	chr16	56793671	56793830	+	0	NA	intron (NM_001242796, intron 1 of 19)	intron (NM_001242796, intron 1 of 19)	10294	NM_001242796	9688		NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
137848	chr2	200796151	200796250	+	0	NA	intron (NR_110275, intron 2 of 3)	AluYa5|SINE|Alu	-15346	NM_014670	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
175868	chr4	80006721	80007280	+	0	NA	intron (NM_001145794, intron 12 of 15)	intron (NM_001145794, intron 12 of 15)	66229	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
232050	chr9	133459511	133461150	+	0	NA	TTS (NM_139027).2	TTS (NM_139027).2	352	NM_017586	11094		NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
24251	chr1	236284171	236285480	+	0	NA	Intergenic	Intergenic	-2867	NM_019891	56605		NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding
17596	chr1	156886071	156886930	+	0	NA	Intergenic	Intergenic	-7218	NM_001353682	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
13794	chr1	117372171	117372400	+	0	NA	intron (NM_006699, intron 1 of 12)	L2c|LINE|L2	4836	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
10209	chr1	62295871	62296230	+	0	NA	intron (NM_001320269, intron 1 of 8)	intron (NM_001320269, intron 1 of 8)	23384	NM_181712	163782		NM_181712	ENSG00000132854	KANK4	ANKRD38|dJ1078M7.1	KN motif and ankyrin repeat domains 4	protein-coding
65332	chr14	50133321	50133580	+	0	NA	intron (NM_006939, intron 19 of 22)	AluSz|SINE|Alu	-16878	NR_049739	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
121713	chr19	47603571	47603730	+	0	NA	Intergenic	AluSx3|SINE|Alu	-4546	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
112964	chr19	7832351	7832800	+	0	NA	intron (NM_145245, intron 1 of 18)	intron (NM_145245, intron 1 of 18)	2357	NM_145245	115704		NM_145245	ENSG00000142459	EVI5L	-	ecotropic viral integration site 5 like	protein-coding
145423	chr20	43456721	43459680	+	0	NA	intron (NM_006275, intron 1 of 5)	CpG	304	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
14870	chr1	146414921	146415650	+	0	NA	Intergenic	Intergenic	38478	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
144025	chr20	33488771	33488930	+	0	NA	Intergenic	AluSg|SINE|Alu	-1246	NM_001032999	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
186356	chr5	134849701	134849900	+	0	NA	intron (NM_001135586, intron 1 of 1)	AluSz|SINE|Alu	3832	NM_001300894	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
178130	chr4	142129971	142130130	+	0	NA	intron (NM_001385459, intron 11 of 18)	L2c|LINE|L2	175782	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
60703	chr13	43971071	43971480	+	0	NA	Intergenic	Intergenic	-51060	NR_026955	121838		NR_026955		NRAD1	LINC00284|NCRNA00284	non-coding RNA in the aldehyde dehydrogenase 1A pathway	ncRNA
197500	chr6	75617201	75617800	+	0	NA	intron (NM_015571, intron 1 of 23)	AluSp|SINE|Alu	15620	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
188545	chr5	156835821	156836150	+	0	NA	Intergenic	L2a|LINE|L2	-14310	NM_206858	153743		NM_206858	ENSG00000231989	PPP1R2B	PPP1R2P3	PPP1R2 family member B	protein-coding
53282	chr12	64273771	64274000	+	0	NA	intron (NM_001099676, intron 9 of 10)	MLT1I|LTR|ERVL-MaLR	-51589	NM_001300940	144577		NM_152440	ENSG00000174206	KICS2	C12orf66	KICSTOR subunit 2	protein-coding
198086	chr6	90273151	90273450	+	0	NA	intron (NM_021813, intron 1 of 8)	AluJr4|SINE|Alu	23543	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
215972	chr8	8783571	8783730	+	0	NA	3' UTR (NM_004225, exon 3 of 3)	3' UTR (NM_004225, exon 3 of 3)	81713	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
106740	chr18	23532271	23532430	+	0	NA	TTS (NM_001318707)	TTS (NM_001318707)	28839	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
52611	chr12	56238251	56238750	+	0	NA	TTS (NM_001135195)	TTS (NM_001135195)	7783	NM_001135195	283375		NM_173596	ENSG00000139540	SLC39A5	LZT-Hs7|MYP24|ZIP5	solute carrier family 39 member 5	protein-coding
2841	chr1	11161251	11161350	+	0	NA	intron (NM_004958, intron 29 of 57)	L1PA5|LINE|L1	17402	NR_046600	100873935		NR_046600	ENSG00000225602	MTOR-AS1	-	MTOR antisense RNA 1	ncRNA
109543	chr19	870921	871180	+	0	NA	exon (NM_005481, exon 13 of 16)	exon (NM_005481, exon 13 of 16)	11386	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
170835	chr3	190210571	190210730	+	0	NA	Intergenic	Intergenic	-79711	NM_001378493	10686		NM_006580	ENSG00000113946	CLDN16	HOMG3|PCLN1	claudin 16	protein-coding
3614	chr1	16363301	16364100	+	0	NA	Intergenic	AluY|SINE|Alu	-3542	NR_073501	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
28997	chr10	63376651	63377280	+	0	NA	intron (NM_001322258, intron 2 of 24)	L1MB3|LINE|L1	-3917	NR_031566	100302150		NR_031566	ENSG00000221063	MIR1296	MIRN1296|hsa-mir-1296|mir-1296	microRNA 1296	ncRNA
101578	chr17	68057471	68058030	+	0	NA	Intergenic	MIR|SINE|MIR	21790	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
67491	chr14	70923921	70925050	+	0	NA	intron (NM_014982, intron 1 of 35)	L1MC3|LINE|L1	17026	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
87387	chr16	70467271	70467430	+	0	NA	intron (NM_145059, intron 6 of 23)	intron (NM_145059, intron 6 of 23)	12755	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
67805	chr14	73773451	73773980	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-13412	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
107150	chr18	35227351	35227450	+	0	NA	Intergenic	MER51A|LTR|ERV1	-13634	NM_032347	84307		NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
223939	chr9	809701	809900	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-31897	NM_021951	1761		NM_021951	ENSG00000137090	DMRT1	CT154|DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
79980	chr16	1791921	1792380	+	0	NA	exon (NM_001146006, exon 2 of 2)	exon (NM_001146006, exon 2 of 2)	1555	NM_004970	3483		NM_004970	ENSG00000099769	IGFALS	ACLSD|ALS	insulin like growth factor binding protein acid labile subunit	protein-coding
128684	chr2	61518021	61518480	+	0	NA	intron (NM_003400, intron 4 of 24)	AluJo|SINE|Alu	20106	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
231762	chr9	132234251	132234580	+	0	NA	intron (NM_032536, intron 5 of 7)	intron (NM_032536, intron 5 of 7)	72357	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
39743	chr11	61824431	61824630	+	0	NA	intron (NM_001281502, intron 1 of 11)	intron (NM_001281502, intron 1 of 11)	-3770	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
111911	chr19	4690771	4690930	+	0	NA	intron (NR_158699, intron 14 of 22)	intron (NR_158699, intron 14 of 22)	11568	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
207656	chr7	45080651	45081030	+	0	NA	intron (NM_001146334, intron 6 of 7)	intron (NM_001146334, intron 6 of 7)	8129	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
151991	chr22	19173401	19173750	+	0	NA	TTS (NR_103767)	TTS (NR_103767)	1869	NR_103767	100652736		NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
183480	chr5	79259251	79259680	+	0	NA	intron (NM_152405, intron 1 of 10)	MER52D|LTR|ERV1	23334	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
34356	chr10	132207801	132208400	+	0	NA	exon (NM_001318879, exon 12 of 12)	exon (NM_001318879, exon 12 of 12)	21152	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
139456	chr2	223896621	223897180	+	0	NA	intron (NM_020830, intron 6 of 11)	intron (NM_020830, intron 6 of 11)	48435	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
141990	chr20	1394471	1394900	+	0	NA	Intergenic	AluSz|SINE|Alu	-1513	NM_054014	2280		NM_000801	ENSG00000088832	FKBP1A	FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE	FKBP prolyl isomerase 1A	protein-coding
164735	chr3	69012621	69014130	+	0	NA	intron (NM_173654, intron 1 of 14)	CpG	309	NR_103826	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
177	chr1	658071	658430	+	0	NA	Intergenic	Intergenic	-25565	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
81104	chr16	4366851	4368130	+	0	NA	intron (NM_001351729, intron 9 of 27)	L2b|LINE|L2	-4358	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
220167	chr8	95105051	95105150	+	0	NA	intron (NR_148914, intron 9 of 11)	(AG)n|Simple_repeat|Simple_repeat	-28685	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
115079	chr19	14213571	14213730	+	0	NA	Intergenic	AluY|SINE|Alu	-7481	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
23719	chr1	231919801	231920400	+	0	NA	intron (NM_001164541, intron 9 of 9)	MER20|DNA|hAT-Charlie	-5734	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
172765	chr4	2907301	2907500	+	0	NA	intron (NM_176801, intron 10 of 15)	intron (NM_176801, intron 10 of 15)	26837	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
76613	chr15	75444201	75444400	+	0	NA	intron (NM_001145357, intron 1 of 20)	AluSg|SINE|Alu	7390	NM_015477	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
122805	chr19	50374671	50375030	+	0	NA	Intergenic	MER41B|LTR|ERV1	-1607	NM_001256647	7376		NM_007121	ENSG00000131408	NR1H2	LXR-b|LXRB|NER|NER-I|RIP15|UNR	nuclear receptor subfamily 1 group H member 2	protein-coding
154246	chr22	31611371	31612000	+	0	NA	intron (NM_001007467, intron 23 of 32)	intron (NM_001007467, intron 23 of 32)	9846	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
118981	chr19	38876151	38876730	+	0	NA	exon (NM_001195833, exon 3 of 12)	exon (NM_001195833, exon 3 of 12)	1835	NM_198445	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
226388	chr9	70396171	70396580	+	0	NA	intron (NM_001206, intron 1 of 1)	L1MC4a|LINE|L1	18282	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
163255	chr3	50288501	50289150	+	0	NA	TTS (NM_001304385)	TTS (NM_001304385)	3604	NM_006764	7866		NM_006764	ENSG00000214706	IFRD2	IFNRP|SKMc15|SM15	interferon related developmental regulator 2	protein-coding
207906	chr7	50531501	50532020	+	0	NA	promoter-TSS (NR_033845)	promoter-TSS (NR_033845)	1	NR_033845	100129427		NR_033845	ENSG00000226122	DDC-AS1	-	DDC antisense RNA 1	ncRNA
37626	chr11	20365751	20366400	+	0	NA	intron (NM_006410, intron 2 of 5)	intron (NM_006410, intron 2 of 5)	1934	NM_001098523	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
5968	chr1	26920551	26920650	+	0	NA	Intergenic	L2|LINE|L2	-1143	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
121614	chr19	47423071	47423750	+	0	NA	Intergenic	Intergenic	-1177	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
159102	chr3	12560551	12561200	+	0	NA	non-coding (NR_165360, exon 1 of 2)	non-coding (NR_165360, exon 1 of 2)	124	NR_165360	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
172839	chr4	3205001	3205200	+	0	NA	intron (NM_002111, intron 42 of 66)	intron (NM_002111, intron 42 of 66)	-39269	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
167816	chr3	133586401	133586900	+	0	NA	exon (NM_017548, exon 4 of 5)	exon (NM_017548, exon 4 of 5)	12216	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
32581	chr10	103469051	103469350	+	0	NA	Intergenic	Intergenic	10040	NM_001129742	119395		NM_182494	ENSG00000183128	CALHM3	FAM26A|bA225H22.7	calcium homeostasis modulator 3	protein-coding
124307	chr19	57946801	57947930	+	0	NA	intron (NM_005773, intron 1 of 2)	CpG	341	NM_001375403	10172		NM_005773	ENSG00000152454	ZNF256	BMZF-3|BMZF3	zinc finger protein 256	protein-coding
164869	chr3	71074021	71074280	+	0	NA	intron (NM_001244810, intron 7 of 20)	MIRb|SINE|MIR	-9226	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
34198	chr10	129035421	129035930	+	0	NA	Intergenic	Intergenic	122842	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
143699	chr20	32191521	32192600	+	0	NA	TTS (NM_002657)	TTS (NM_002657)	-1700	NR_002781	128854		NM_178465	ENSG00000235217	TSPY26P	TSPYL3|bA392M18.1	testis specific protein Y-linked 26, pseudogene	pseudo
75381	chr15	65727071	65727830	+	0	NA	intron (NM_001376919, intron 11 of 31)	AluY|SINE|Alu	-8118	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
213953	chr7	142719471	142719630	+	0	NA	intron (NM_001130026, intron 10 of 10)	(GA)n|Simple_repeat|Simple_repeat	-29922	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
167531	chr3	129307571	129308200	+	0	NA	Intergenic	AluJr|SINE|Alu	-8386	NR_026991	339942		NM_001025468		H1-10-AS1	C3orf47|H1FX-AS1	H1-10 antisense RNA 1	ncRNA
71389	chr14	105514901	105515700	+	0	NA	Intergenic	AluSq2|SINE|Alu	-11283	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
109270	chr19	538651	538750	+	0	NA	intron (NM_004359, intron 4 of 4)	intron (NM_004359, intron 4 of 4)	-5353	NM_005317	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
159474	chr3	14142111	14143180	+	0	NA	3' UTR (NM_024334, exon 12 of 12)	3' UTR (NM_024334, exon 12 of 12)	17593	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
34891	chr11	377821	378080	+	0	NA	intron (NM_178537, intron 14 of 19)	L2c|LINE|L2	8451	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
34405	chr10	132390671	132391150	+	0	NA	Intergenic	Intergenic	-6290	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
175437	chr4	71124101	71124550	+	0	NA	Intergenic	AluSc|SINE|Alu	-62440	NM_001134742	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
221630	chr8	125828721	125828980	+	0	NA	Intergenic	Intergenic	122347	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
68897	chr14	91343651	91344330	+	0	NA	intron (NM_001080414, intron 4 of 29)	AluJb|SINE|Alu	73830	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
121136	chr19	46189401	46189700	+	0	NA	non-coding (NR_135234, exon 3 of 3)	non-coding (NR_135234, exon 3 of 3)	13512	NR_135234	645553		NR_135234	ENSG00000268621	IGFL2-AS1	-	IGFL2 antisense RNA 1	ncRNA
170769	chr3	188554701	188554900	+	0	NA	intron (NR_164692, intron 5 of 9)	intron (NR_164692, intron 5 of 9)	13866	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
135321	chr2	160339701	160339900	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	-67905	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
166188	chr3	111698601	111699000	+	0	NA	intron (NM_153268, intron 1 of 3)	MER106B|DNA|hAT-Charlie	-21367	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
9035	chr1	44782971	44783330	+	0	NA	TTS (NM_153274)	TTS (NM_153274)	4760	NR_001457	94163		NR_001457	ENSG00000281859	SNORD38B	RNU38B|U38B	small nucleolar RNA, C/D box 38B	snoRNA
27905	chr10	41890821	41891280	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	476995	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
160367	chr3	27880971	27881930	+	0	NA	Intergenic	Intergenic	-47314	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
73124	chr15	41283451	41285400	+	0	NA	promoter-TSS (NR_152821)	promoter-TSS (NR_152821)	435	NR_026757	729082		NR_026757	ENSG00000247556	OIP5-AS1	cyrano|linc-OIP5	OIP5 antisense RNA 1	ncRNA
120809	chr19	45471901	45474600	+	0	NA	3' UTR (NM_001114171, exon 3 of 3)	3' UTR (NM_001114171, exon 3 of 3)	5254	NM_006732	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
213603	chr7	139394321	139394980	+	0	NA	intron (NM_016019, intron 2 of 9)	intron (NM_016019, intron 2 of 9)	32876	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
38349	chr11	44574271	44575400	+	0	NA	intron (NM_002231, intron 1 of 9)	L1ME4a|LINE|L1	9172	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
6078	chr1	27197871	27198450	+	0	NA	Intergenic	Intergenic	-36472	NM_001276252	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
115373	chr19	15237771	15238430	+	0	NA	3' UTR (NM_058243, exon 20 of 20)	3' UTR (NM_058243, exon 20 of 20)	-5053	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
3951	chr1	18635801	18636000	+	0	NA	intron (NM_013945, intron 3 of 7)	intron (NM_013945, intron 3 of 7)	5054	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
40600	chr11	64634751	64634850	+	0	NA	intron (NM_015080, intron 18 of 22)	intron (NM_015080, intron 18 of 22)	8745	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
810	chr1	1557421	1557680	+	0	NA	intron (NM_014188, intron 2 of 4)	AluSx|SINE|Alu	-16926	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
92218	chr17	7865851	7866150	+	0	NA	intron (NM_001330111, intron 3 of 4)	L2c|LINE|L2	7997	NM_001330110	124637		NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
193112	chr6	28944201	28946130	+	0	NA	TTS (NR_103538)	TTS (NR_103538)	1381	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
168236	chr3	141368801	141369000	+	0	NA	intron (NM_001080412, intron 2 of 7)	intron (NM_001080412, intron 2 of 7)	396	NM_001376113	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
1594	chr1	3620701	3621700	+	0	NA	Intergenic	LTR13|LTR|ERVK	-3815	NM_182752	127262		NM_182752	ENSG00000158109	TPRG1L	FAM79A|SVAP30|TPRGL|h-mover|mover	tumor protein p63 regulated 1 like	protein-coding
80598	chr16	2919471	2920500	+	0	NA	intron (NM_032296, intron 2 of 9)	intron (NM_032296, intron 2 of 9)	8006	NM_020912	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
169926	chr3	178084821	178085530	+	0	NA	Intergenic	Intergenic	268310	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
175896	chr4	80101371	80101800	+	0	NA	Intergenic	Intergenic	-28113	NM_001286780	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
158745	chr3	9180151	9180650	+	0	NA	intron (NM_014850, intron 1 of 21)	intron (NM_014850, intron 1 of 21)	-12093	NR_121663	101927416		NR_121663	ENSG00000228723	SRGAP3-AS2	-	SRGAP3 antisense RNA 2	ncRNA
146802	chr20	50956421	50956930	+	0	NA	intron (NM_003859, intron 1 of 8)	intron (NM_003859, intron 1 of 8)	1857	NM_003859	8813		NM_003859	ENSG00000000419	DPM1	CDGIE|MPDS	dolichyl-phosphate mannosyltransferase subunit 1, catalytic	protein-coding
140270	chr2	232318521	232318780	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-60101	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
150271	chr21	41778221	41778480	+	0	NA	Intergenic	CpG	-11298	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
227065	chr9	84266101	84266430	+	0	NA	Intergenic	Intergenic	74493	NR_037638	64078		NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
88614	chr16	85608701	85609100	+	0	NA	Intergenic	Intergenic	-2509	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
213704	chr7	140225421	140226330	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	48614	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
126218	chr2	26942621	26942950	+	0	NA	intron (NM_020134, intron 11 of 12)	intron (NM_020134, intron 11 of 12)	-27852	NM_012326	22924		NM_012326	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule associated protein RP/EB family member 3	protein-coding
223751	chr8	144513721	144514350	+	0	NA	exon (NM_004260, exon 12 of 21)	exon (NM_004260, exon 12 of 21)	3798	NM_004260	9401		NM_004260	ENSG00000160957	RECQL4	RECQ4	RecQ like helicase 4	protein-coding
88775	chr16	87222021	87222450	+	0	NA	intron (NR_110939, intron 2 of 2)	(ATCACC)n|Simple_repeat|Simple_repeat	10120	NR_110939	101928708		NR_110939	ENSG00000261095	LOC101928708	-	uncharacterized LOC101928708	ncRNA
188827	chr5	159096871	159097280	+	0	NA	exon (NM_001324109, exon 2 of 16)	exon (NM_001324109, exon 2 of 16)	881	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
36322	chr11	3867171	3867930	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	11488	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
224231	chr9	5799451	5799550	+	0	NA	intron (NM_024896, intron 11 of 14)	intron (NM_024896, intron 11 of 14)	33617	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
59603	chr13	27697901	27698100	+	0	NA	Intergenic	L1PA16|LINE|L1	76108	NM_015972	51082		NM_015972	ENSG00000186184	POLR1D	AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2	RNA polymerase I and III subunit D	protein-coding
96221	chr17	39777601	39778750	+	0	NA	promoter-TSS (NM_001284516)	promoter-TSS (NM_001284516)	50	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
198534	chr6	106539371	106539530	+	0	NA	exon (NM_001624, exon 7 of 20)	exon (NM_001624, exon 7 of 20)	27595	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
119158	chr19	39393571	39394150	+	0	NA	intron (NM_001317770, intron 3 of 3)	L2b|LINE|L2	2482	NM_001317770	55588		NM_017592	ENSG00000063322	MED29	IXL|MED2	mediator complex subunit 29	protein-coding
177104	chr4	108083201	108083400	+	0	NA	intron (NM_016269, intron 5 of 11)	intron (NM_016269, intron 5 of 11)	78636	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
142021	chr20	1657731	1658550	+	0	NA	promoter-TSS (NM_001039508)	promoter-TSS (NM_001039508)	-361	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
60226	chr13	40530871	40531250	+	0	NA	Intergenic	L1MC5|LINE|L1	-50054	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
154279	chr22	31639571	31640280	+	0	NA	intron (NM_001326416, intron 3 of 10)	intron (NM_001326416, intron 3 of 10)	-1402	NM_178022	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
115046	chr19	14134351	14134450	+	0	NA	intron (NM_018154, intron 1 of 3)	intron (NM_018154, intron 1 of 3)	2189	NM_018154	55723		NM_018154	ENSG00000105011	ASF1B	CIA-II	anti-silencing function 1B histone chaperone	protein-coding
44261	chr11	102047321	102047730	+	0	NA	promoter-TSS (NM_032930)	promoter-TSS (NM_032930)	87	NM_001363505	85016		NM_032930	ENSG00000137691	CFAP300	C11orf70|CILD38|DNAAF17|FBB5	cilia and flagella associated protein 300	protein-coding
48430	chr12	9685921	9686500	+	0	NA	intron (NM_013269, intron 2 of 4)	L1PA7|LINE|L1	16497	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
33045	chr10	110854121	110854750	+	0	NA	Intergenic	L1M5|LINE|L1	16469	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
160605	chr3	31358551	31358850	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-174225	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
94737	chr17	30788851	30788950	+	0	NA	intron (NR_144394, intron 8 of 8)	AluSg|SINE|Alu	35792	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
49204	chr12	15883721	15884180	+	0	NA	intron (NM_007178, intron 2 of 9)	MER5A|DNA|hAT-Charlie	1563	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
220239	chr8	96830171	96830330	+	0	NA	intron (NM_016134, intron 2 of 7)	intron (NM_016134, intron 2 of 7)	185008	NM_016134	10404		NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
63597	chr14	20485851	20486280	+	0	NA	Intergenic	LTR9A1|LTR|ERV1	16659	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
188321	chr5	151216271	151216680	+	0	NA	intron (NR_160730, intron 2 of 3)	AluSx|SINE|Alu	4341	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
30164	chr10	74186371	74186530	+	0	NA	intron (NM_001369124, intron 1 of 9)	AluJb|SINE|Alu	9687	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
124665	chr2	3221171	3221700	+	0	NA	intron (NM_001330531, intron 3 of 7)	intron (NM_001330531, intron 3 of 7)	-95409	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
88255	chr16	82641401	82641900	+	0	NA	intron (NM_001220488, intron 2 of 14)	intron (NM_001220488, intron 2 of 14)	14681	NM_001220492	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
148777	chr21	8208101	8209200	+	0	NA	promoter-TSS (NR_003286)	promoter-TSS (NR_003286)	177	NR_128711	103504731		NR_128711	ENSG00000264462	MIR3648-2	hsa-mir-3648-2	microRNA 3648-2	ncRNA
160955	chr3	36957021	36957300	+	0	NA	Intergenic	Intergenic	-12106	NM_001329998	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
8274	chr1	39901701	39902930	+	0	NA	promoter-TSS (NM_005376)	promoter-TSS (NM_005376)	-398	NM_005376	4610		NM_005376	ENSG00000116990	MYCL	L-Myc|LMYC|MYCL1|bHLHe38	MYCL proto-oncogene, bHLH transcription factor	protein-coding
152020	chr22	19431301	19431900	+	0	NA	promoter-TSS (NM_001318151)	promoter-TSS (NM_001318151)	133	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
40479	chr11	64238221	64238630	+	0	NA	3' UTR (NM_001243733, exon 7 of 7)	3' UTR (NM_001243733, exon 7 of 7)	-2670	NM_004470	2286		NM_004470	ENSG00000173486	FKBP2	FKBP-13|FKBP13|PPIase	FKBP prolyl isomerase 2	protein-coding
98484	chr17	47218671	47219400	+	0	NA	intron (NM_001002841, intron 3 of 7)	MIR|SINE|MIR	9687	NM_002476	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
38147	chr11	35418651	35419530	+	0	NA	5' UTR (NM_004171, exon 1 of 11)	5' UTR (NM_004171, exon 1 of 11)	468	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
174761	chr4	47485071	47486430	+	0	NA	intron (NM_020453, intron 1 of 22)	intron (NM_020453, intron 1 of 22)	475	NM_020453	57205		NM_020453	ENSG00000145246	ATP10D	ATPVD	ATPase phospholipid transporting 10D (putative)	protein-coding
44592	chr11	108295051	108295550	+	0	NA	intron (NM_000051, intron 32 of 62)	L2|LINE|L2	71771	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
62572	chr13	99975801	99976230	+	0	NA	Intergenic	Intergenic	-4106	NM_033132	85416		NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
133187	chr2	112980251	112980550	+	0	NA	intron (NM_019618, intron 4 of 4)	intron (NM_019618, intron 4 of 4)	2394	NM_019618	56300		NM_019618	ENSG00000136688	IL36G	IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2	interleukin 36 gamma	protein-coding
2699	chr1	10639651	10639750	+	0	NA	exon (NM_001079843, exon 21 of 21)	exon (NM_001079843, exon 21 of 21)	156946	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
203189	chr6	167278651	167278750	+	0	NA	Intergenic	Intergenic	-12615	NM_018974	54346		NM_018974	ENSG00000112494	UNC93A	Unc-93A|dJ366N23.1|dJ366N23.2	unc-93 homolog A	protein-coding
61176	chr13	49127201	49127600	+	0	NA	intron (NM_001079673, intron 4 of 25)	L2-3_Crp|LINE|L2	17083	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
26417	chr10	17203401	17203600	+	0	NA	Intergenic	Intergenic	-1429	NM_001351223	1787		NM_004412	ENSG00000107614	TRDMT1	DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1	tRNA aspartic acid methyltransferase 1	protein-coding
64141	chr14	22877501	22878100	+	0	NA	3' UTR (NM_014045, exon 7 of 7)	3' UTR (NM_014045, exon 7 of 7)	-5422	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
162731	chr3	49028671	49031400	+	0	NA	promoter-TSS (NM_000884)	promoter-TSS (NM_000884)	-637	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
77304	chr15	82353651	82353950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1336	NR_004847	100134869		NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	UBE2Q2 pseudogene 2	pseudo
124801	chr2	7489501	7489800	+	0	NA	Intergenic	Intergenic	68389	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
114854	chr19	13852701	13853200	+	0	NA	Intergenic	AluSc8|SINE|Alu	-9086	NR_146095	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
85622	chr16	54193671	54193930	+	0	NA	Intergenic	Intergenic	77079	NR_126340	100996338		NR_126340		LINC02169	-	long intergenic non-protein coding RNA 2169	ncRNA
132429	chr2	105831571	105831980	+	0	NA	intron (NM_001004722, intron 2 of 3)	L1MA5|LINE|L1	-20072	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
195941	chr6	41926071	41926430	+	0	NA	intron (NM_004053, intron 1 of 6)	intron (NM_004053, intron 1 of 6)	4751	NM_004053	705		NM_004053	ENSG00000112578	BYSL	BYSTIN|Enp1	bystin like	protein-coding
202427	chr6	157946871	157947430	+	0	NA	Intergenic	Intergenic	-34713	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
64848	chr14	35205401	35206030	+	0	NA	intron (NM_001256678, intron 4 of 6)	intron (NM_001256678, intron 4 of 6)	-72843	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
89501	chr16	89154551	89155680	+	0	NA	non-coding (NR_045667, exon 5 of 5)	non-coding (NR_045667, exon 5 of 5)	-4105	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
160861	chr3	33277321	33277680	+	0	NA	promoter-TSS (NM_001349316)	promoter-TSS (NM_001349316)	58	NR_146135	25827		NM_012157	ENSG00000153558	FBXL2	FBL2|FBL3	F-box and leucine rich repeat protein 2	protein-coding
71187	chr14	105054451	105055100	+	0	NA	intron (NM_001278696, intron 1 of 1)	AluSx1|SINE|Alu	10655	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
141679	chr2	241801951	241802480	+	0	NA	intron (NM_022134, intron 3 of 3)	intron (NM_022134, intron 3 of 3)	-6978	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
112132	chr19	5606051	5606650	+	0	NA	intron (NM_014649, intron 9 of 20)	AluJr|SINE|Alu	16426	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
51717	chr12	53208101	53208300	+	0	NA	promoter-TSS (NM_000889)	promoter-TSS (NM_000889)	-949	NM_000889	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
153308	chr22	24189501	24190300	+	0	NA	TTS (NM_019601)	TTS (NM_019601)	8413	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
176943	chr4	103016601	103017050	+	0	NA	intron (NR_047513, intron 1 of 10)	L2b|LINE|L2	2880	NR_047515	150159		NM_139173	ENSG00000164037	SLC9B1	NHA1|NHEDC1	solute carrier family 9 member B1	protein-coding
42882	chr11	73343451	73343950	+	0	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	-32699	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
84564	chr16	30608421	30608750	+	0	NA	intron (NM_138447, intron 2 of 2)	MER5A|DNA|hAT-Charlie	1243	NR_104166	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
103566	chr17	78680301	78680500	+	0	NA	intron (NM_017456, intron 11 of 12)	intron (NM_017456, intron 11 of 12)	36632	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
174490	chr4	39944951	39945550	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluY|SINE|Alu	32661	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
116645	chr19	18319801	18320630	+	0	NA	intron (NM_012321, intron 1 of 4)	intron (NM_012321, intron 1 of 4)	2861	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
205829	chr7	24820801	24822180	+	0	NA	intron (NM_015550, intron 16 of 22)	intron (NM_015550, intron 16 of 22)	-63551	NM_004403	1687		NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
217937	chr8	38103501	38103950	+	0	NA	Intergenic	AluJo|SINE|Alu	-1768	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
135827	chr2	170436721	170436980	+	0	NA	intron (NR_045682, intron 22 of 35)	intron (NR_045682, intron 22 of 35)	-85907	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
25033	chr10	3755121	3755680	+	0	NA	Intergenic	Intergenic	29809	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
24948	chr10	1463051	1463350	+	0	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	-63430	NR_033387	642394		NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168	ADARB2 antisense RNA 1	ncRNA
91742	chr17	6750601	6750800	+	0	NA	Intergenic	Intergenic	-4747	NM_001353135	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
37448	chr11	18012151	18014130	+	0	NA	promoter-TSS (NM_012139)	promoter-TSS (NM_012139)	-93	NR_104040	26297		NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
108916	chr18	79442421	79442680	+	0	NA	intron (NM_172389, intron 3 of 9)	CpG	42251	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
143970	chr20	32843601	32844180	+	0	NA	intron (NM_012325, intron 5 of 6)	AluSx1|SINE|Alu	-15033	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
104056	chr17	80148771	80149250	+	0	NA	Intergenic	AluSx|SINE|Alu	-1882	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
12437	chr1	104263251	104263350	+	0	NA	Intergenic	LTR13|LTR|ERVK	190277	NR_033990	100129138		NR_033990	ENSG00000293061	THAP3P1	-	THAP3 pseudogene 1	pseudo
130425	chr2	85351001	85351200	+	0	NA	intron (NM_017750, intron 2 of 10)	intron (NM_017750, intron 2 of 10)	3428	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
103598	chr17	78716851	78717450	+	0	NA	promoter-TSS (NM_001292019)	promoter-TSS (NM_001292019)	-118	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
229403	chr9	121194821	121195280	+	0	NA	intron (NM_016322, intron 1 of 7)	intron (NM_016322, intron 1 of 7)	-6433	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
199318	chr6	112311971	112312200	+	0	NA	Intergenic	Intergenic	-35245	NM_001013734	442247		NM_001013734	ENSG00000251258	RFPL4B	RNF211	ret finger protein like 4B	protein-coding
6689	chr1	29165971	29166130	+	0	NA	intron (NM_005626, intron 1 of 5)	MamSINE1|SINE|tRNA-RTE	15850	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
87189	chr16	69386971	69387430	+	0	NA	Intergenic	AluY|SINE|Alu	-1193	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
90293	chr17	1035171	1035880	+	0	NA	intron (NM_001282149, intron 11 of 17).3	intron (NM_001282149, intron 11 of 17).3	-3694	NM_001256847	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
51925	chr12	53698871	53699030	+	0	NA	Intergenic	(ATTTT)n|Simple_repeat|Simple_repeat	-22620	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
153971	chr22	30369101	30369300	+	0	NA	non-coding (NR_046312, exon 2 of 2)	non-coding (NR_046312, exon 2 of 2)	8705	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
177565	chr4	119314171	119314650	+	0	NA	Intergenic	Intergenic	7728	NM_000134	2169		NM_000134	ENSG00000145384	FABP2	FABPI|I-FABP	fatty acid binding protein 2	protein-coding
135545	chr2	162343551	162344930	+	0	NA	promoter-TSS (NM_001330271)	promoter-TSS (NM_001330271)	108	NM_012198	25801		NM_012198	ENSG00000115271	GCA	GCL	grancalcin	protein-coding
36092	chr11	3015851	3016350	+	0	NA	intron (NR_165428, intron 16 of 22)	intron (NR_165428, intron 16 of 22)	-13294	NR_046580	100852407		NR_046580	ENSG00000247473	CARS1-AS1	CARS-AS1	CARS1 antisense RNA 1	ncRNA
101986	chr17	74757521	74758180	+	0	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	9222	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
21746	chr1	206859071	206859300	+	0	NA	Intergenic	Intergenic	-4380	NM_001385166	50604		NM_018724	ENSG00000162891	IL20	IL-20|IL10D|ZCYTO10	interleukin 20	protein-coding
85275	chr16	48584921	48585530	+	0	NA	intron (NM_153029, intron 1 of 6)	AluSx1|SINE|Alu	24955	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
24771	chr1	248853421	248854650	+	0	NA	exon (NM_001350073, exon 10 of 12)	exon (NM_001350073, exon 10 of 12)	5050	NM_001350073	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
20048	chr1	185441201	185441400	+	0	NA	Intergenic	Intergenic	-106261	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
200728	chr6	137705121	137706700	+	0	NA	Intergenic	Intergenic	33127	NR_121618	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
117278	chr19	19473571	19473730	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	38587	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
184126	chr5	94613571	94614330	+	0	NA	intron (NM_001385719, intron 1 of 6)	intron (NM_001385719, intron 1 of 6)	4175	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
52040	chr12	54008151	54008250	+	0	NA	promoter-TSS (NM_022658)	promoter-TSS (NM_022658)	-785	NM_022658	3224		NM_022658	ENSG00000037965	HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
162609	chr3	48702251	48702630	+	0	NA	intron (NM_016291, intron 1 of 5)	L2a|LINE|L2	14781	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
91308	chr17	4304421	4305200	+	0	NA	intron (NM_003342, intron 2 of 5)	intron (NM_003342, intron 2 of 5)	-32916	NR_110982	103021295		NR_110982		LOC103021295	-	uncharacterized LOC103021295	ncRNA
105844	chr18	2998621	2999550	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	12862	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
82513	chr16	17474101	17474700	+	0	NA	Intergenic	Intergenic	-3440	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
210253	chr7	99394151	99394450	+	0	NA	TTS (NM_014891)	TTS (NM_014891)	14297	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
222235	chr8	133122771	133123130	+	0	NA	intron (NM_003235, intron 45 of 47)	MER20|DNA|hAT-Charlie	-20348	NM_001045557	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
70340	chr14	101849171	101850100	+	0	NA	intron (NM_001352916, intron 2 of 13)	L1ME3B|LINE|L1	39772	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
190183	chr5	178197071	178197230	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	-7383	NM_004499	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
12955	chr1	110875031	110875900	+	0	NA	intron (NM_001040033, intron 2 of 8)	intron (NM_001040033, intron 2 of 8)	2317	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
57243	chr12	121559071	121559580	+	0	NA	intron (NM_001005366, intron 4 of 22)	intron (NM_001005366, intron 4 of 22)	20921	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
177472	chr4	113759521	113761000	+	0	NA	intron (NM_172129, intron 1 of 17)	intron (NM_172129, intron 1 of 17)	1478	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
56446	chr12	113872301	113872880	+	0	NA	intron (NM_016196, intron 21 of 23)	SVA_F|Retroposon|SVA	93735	NM_001146698	9904		NM_016196	ENSG00000122965	RBM19	Mrd1	RNA binding motif protein 19	protein-coding
19732	chr1	181138301	181138700	+	0	NA	Intergenic	AluJo|SINE|Alu	-35984	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
192700	chr6	26306651	26306950	+	0	NA	Intergenic	AluJb|SINE|Alu	-21266	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
162959	chr3	49673411	49674830	+	0	NA	promoter-TSS (NM_001640)	promoter-TSS (NM_001640)	-231	NM_001640	327		NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
232444	chr9	136115751	136116280	+	0	NA	non-coding (NR_134506, exon 2 of 3)	non-coding (NR_134506, exon 2 of 3)	-1777	NR_165242	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
43767	chr11	86242421	86242680	+	0	NA	Intergenic	Tigger20a|DNA|TcMar-Tigger	-1834	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
93231	chr17	17847301	17847500	+	0	NA	3' UTR (NM_001288787, exon 14 of 14)	3' UTR (NM_001288787, exon 14 of 14)	-10389	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
77864	chr15	88899521	88899780	+	0	NA	intron (NM_001114614, intron 6 of 6)	intron (NM_001114614, intron 6 of 6)	-4106	NM_178232	145864		NM_178232	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
51759	chr12	53294021	53294280	+	0	NA	TTS (NM_012291)	TTS (NM_012291)	-1301	NM_145897	5204		NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
55751	chr12	108511721	108512450	+	0	NA	Intergenic	Intergenic	-3192	NM_007076	11153		NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain protein adenylyltransferase	protein-coding
198582	chr6	107634601	107635100	+	0	NA	exon (NM_018013, exon 6 of 7)	exon (NM_018013, exon 6 of 7)	97300	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
169544	chr3	170175551	170175850	+	0	NA	intron (NM_001308116, intron 2 of 14)	AluSc8|SINE|Alu	6033	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
157093	chr22	42626771	42627200	+	0	NA	intron (NM_001129819, intron 7 of 8)	intron (NM_001129819, intron 7 of 8)	11740	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
117013	chr19	18910871	18911500	+	0	NA	intron (NM_007263, intron 2 of 9)	intron (NM_007263, intron 2 of 9)	8202	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
32852	chr10	110062471	110062630	+	0	NA	intron (NM_016824, intron 1 of 14)	AluJb|SINE|Alu	-54169	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
33332	chr10	116723701	116724580	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	18426	NM_025015	259217		NM_025015	ENSG00000165868	HSPA12A	-	heat shock protein family A (Hsp70) member 12A	protein-coding
185491	chr5	131305071	131305780	+	0	NA	intron (NM_001038702, intron 1 of 4)	MER57D|LTR|ERV1	41372	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
146087	chr20	47574751	47575300	+	0	NA	intron (NM_181659, intron 1 of 22)	intron (NM_181659, intron 1 of 22)	73138	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
114398	chr19	12617821	12618080	+	0	NA	intron (NM_153358, intron 1 of 3)	AluSq2|SINE|Alu	7030	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
154318	chr22	31977001	31977600	+	0	NA	intron (NR_149128, intron 2 of 4)	intron (NR_149128, intron 2 of 4)	6477	NR_149128	105372999		NR_149128		LINC02558	-	long intergenic non-protein coding RNA 2558	ncRNA
110950	chr19	2887351	2887900	+	0	NA	Intergenic	Intergenic	-13303	NM_173480	126295		NM_173480	ENSG00000171970	ZNF57	ZNF424	zinc finger protein 57	protein-coding
237507	chrX	120000371	120001050	+	0	NA	Intergenic	Intergenic	14841	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
107509	chr18	47932871	47933350	+	0	NA	Intergenic	Intergenic	-1964	NM_001135937	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
6205	chr1	27467171	27467330	+	0	NA	intron (NM_006990, intron 1 of 8)	(AC)n|Simple_repeat|Simple_repeat	22917	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
168762	chr3	151224371	151224930	+	0	NA	intron (NM_014879, intron 1 of 2)	intron (NM_014879, intron 1 of 2)	-21434	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
211839	chr7	108525641	108527150	+	0	NA	promoter-TSS (NM_015723)	promoter-TSS (NM_015723)	-260	NM_001256009	50640		NM_015723	ENSG00000135241	PNPLA8	IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma	patatin like phospholipase domain containing 8	protein-coding
166996	chr3	125929051	125929980	+	0	NA	non-coding (NR_024250, exon 5 of 5)	non-coding (NR_024250, exon 5 of 5)	7664	NM_001015050	200810		NM_001015050	ENSG00000291096	ALG1L1P	ALG1L|ALG1L1	ALG1 like 1, pseudogene	pseudo
191512	chr6	11317401	11317600	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	64848	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
185760	chr5	132270151	132270250	+	0	NA	intron (NM_001131027, intron 3 of 5)	intron (NM_001131027, intron 3 of 5)	12504	NM_003687	8572		NM_003687	ENSG00000131435	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
123811	chr19	55168721	55169180	+	0	NA	Intergenic	AluSx|SINE|Alu	-2228	NM_001256714	352909		NM_178837	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	dynein axonemal assembly factor 3	protein-coding
26459	chr10	17509021	17509560	+	0	NA	Intergenic	Intergenic	-54695	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
230064	chr9	127428951	127429530	+	0	NA	intron (NM_001286698, intron 2 of 2)	AluSz|SINE|Alu	4858	NM_007135	7633		NM_007135	ENSG00000196152	ZNF79	pT7	zinc finger protein 79	protein-coding
220987	chr8	115451601	115452880	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	215773	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
110600	chr19	2178051	2178150	+	0	NA	intron (NM_032482, intron 1 of 27)	AluSz|SINE|Alu	14167	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
118161	chr19	35024151	35024250	+	0	NA	intron (NM_001320034, intron 18 of 18)	MIR|SINE|MIR	-6270	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
210106	chr7	97927801	97928700	+	0	NA	non-coding (NR_147989, exon 3 of 19)	non-coding (NR_147989, exon 3 of 19)	191	NM_001352496	440		NM_001673	ENSG00000070669	ASNS	ASNSD|TS11	asparagine synthetase (glutamine-hydrolyzing)	protein-coding
192057	chr6	16527801	16528000	+	0	NA	intron (NM_000332, intron 5 of 8)	intron (NM_000332, intron 5 of 8)	232284	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
138336	chr2	203824751	203824850	+	0	NA	Intergenic	L2|LINE|L2	-42971	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
123536	chr19	54353801	54354200	+	0	NA	non-coding (NR_110279, exon 10 of 10).2	non-coding (NR_110279, exon 10 of 10).2	10931	NR_110279	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
9011	chr1	44724581	44725450	+	0	NA	intron (NM_001145636, intron 10 of 11)	intron (NM_001145636, intron 10 of 11)	-3114	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
217289	chr8	27368051	27368380	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	42651	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
82774	chr16	21441901	21442100	+	0	NA	Intergenic	AluJo|SINE|Alu	-7545	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
206481	chr7	33050371	33051130	+	0	NA	intron (NM_001374336, intron 1 of 10)	intron (NM_001374336, intron 1 of 10)	-9844	NM_001166118	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
130267	chr2	84865051	84865650	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	15734	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
12729	chr1	109545351	109545650	+	0	NA	3' UTR (NM_031936, exon 3 of 3)	3' UTR (NM_031936, exon 3 of 3)	-3115	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
76134	chr15	72536101	72536550	+	0	NA	intron (NM_005744, intron 2 of 13)	AluJo|SINE|Alu	-50892	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
200269	chr6	132648271	132648650	+	0	NA	intron (NM_138327, intron 1 of 1)	intron (NM_138327, intron 1 of 1)	10722	NM_138327	134864		NM_138327	ENSG00000146399	TAAR1	TA1|TAR1|TRAR1	trace amine associated receptor 1	protein-coding
165221	chr3	72965621	72966780	+	0	NA	intron (NR_138564, intron 5 of 6)	AluSx1|SINE|Alu	-30543	NM_001318026	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
83580	chr16	28147221	28147480	+	0	NA	intron (NM_001270940, intron 9 of 24)	FLAM_C|SINE|Alu	64615	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
17518	chr1	156765751	156765850	+	0	NA	Intergenic	MIRb|SINE|MIR	-1735	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
72027	chr15	28110071	28110580	+	0	NA	TTS (NM_004667).2	TTS (NM_004667).2	-11010	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
82615	chr16	18917571	18917930	+	0	NA	intron (NM_015092, intron 1 of 62)	AluSp|SINE|Alu	8658	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
166640	chr3	119701451	119701550	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-1522	NM_001320317	89876		NM_033364	ENSG00000183833	CFAP91	AAT1|AAT1alpha|C3orf15|CaM-IP2|MAATS1|SPATA26|SPGF51	cilia and flagella associated protein 91	protein-coding
62223	chr13	98515121	98515380	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	6875	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
196749	chr6	45425501	45425850	+	0	NA	intron (NM_001278478, intron 1 of 5)	intron (NM_001278478, intron 1 of 5)	3400	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
112184	chr19	5666671	5666830	+	0	NA	intron (NM_001320571, intron 15 of 18)	intron (NM_001320571, intron 15 of 18)	13488	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
48331	chr12	9048721	9048980	+	0	NA	Intergenic	L1MCa|LINE|L1	16220	NR_034140	253128		NM_182550	ENSG00000214851	LINC00612	C12orf33	long intergenic non-protein coding RNA 612	ncRNA
17382	chr1	156593271	156594100	+	0	NA	TTS (NM_015590)	TTS (NM_015590)	1909	NM_144772	128240		NM_144772	ENSG00000163382	NAXE	AIBP|APOA1BP|PEBEL|YJEFN1	NAD(P)HX epimerase	protein-coding
173928	chr4	25375821	25376200	+	0	NA	Intergenic	L2c|LINE|L2	-1253	NM_001286756	29945		NM_013367	ENSG00000053900	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
64762	chr14	34611551	34612050	+	0	NA	intron (NR_159357, intron 2 of 12)	AluY|SINE|Alu	18348	NR_159358	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
67020	chr14	67524701	67524900	+	0	NA	intron (NM_001348546, intron 1 of 2)	intron (NM_001348546, intron 1 of 2)	-8490	NM_020715	57475		NM_020715	ENSG00000054690	PLEKHH1	-	pleckstrin homology, MyTH4 and FERM domain containing H1	protein-coding
50327	chr12	46983621	46984200	+	0	NA	Intergenic	L1PA8|LINE|L1	-95693	NM_001281429	91523		NM_138371	ENSG00000179715	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
156207	chr22	40322871	40323050	+	0	NA	exon (NM_001162501, exon 23 of 23)	exon (NM_001162501, exon 23 of 23)	-23540	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
197159	chr6	59570601	59571250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1609479	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
185517	chr5	131328771	131329250	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1MEh|LINE|L1	64957	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
104635	chr17	81440701	81440980	+	0	NA	intron (NM_001377448, intron 4 of 27)	intron (NM_001377448, intron 4 of 27)	10348	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
133355	chr2	114662201	114662400	+	0	NA	intron (NM_001321908, intron 2 of 25)	CpG	171248	NR_132105	101927591		NR_132105	ENSG00000231538	DPP10-AS3	-	DPP10 antisense RNA 3	ncRNA
128555	chr2	60885771	60886350	+	0	NA	intron (NM_001291746, intron 1 of 9)	intron (NM_001291746, intron 1 of 9)	4486	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
202265	chr6	157018951	157019330	+	0	NA	intron (NM_001371656, intron 6 of 20)	L2|LINE|L2	-17287	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
231236	chr9	129974901	129975100	+	0	NA	intron (NM_001363755, intron 4 of 15)	AluSx1|SINE|Alu	68189	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
91868	chr17	7236471	7236630	+	0	NA	exon (NM_001284517, exon 4 of 5)	exon (NM_001284517, exon 4 of 5)	-2033	NM_004422	1856		NM_004422	ENSG00000004975	DVL2	-	dishevelled segment polarity protein 2	protein-coding
80516	chr16	2754191	2754750	+	0	NA	intron (NM_016333, intron 1 of 14)	AluSc5|SINE|Alu	1832	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
227476	chr9	91150771	91151750	+	0	NA	intron (NR_135306, intron 2 of 2)	intron (NR_135306, intron 2 of 2)	32198	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
126346	chr2	27403301	27403700	+	0	NA	intron (NM_177983, intron 1 of 9)	intron (NM_177983, intron 1 of 9)	6091	NM_177983	5496		NM_177983	ENSG00000115241	PPM1G	PP2CG|PP2CGAMMA|PPP2CG	protein phosphatase, Mg2+/Mn2+ dependent 1G	protein-coding
70441	chr14	102047421	102048330	+	0	NA	exon (NM_001376, exon 73 of 78)	exon (NM_001376, exon 73 of 78)	39169	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
115797	chr19	16377671	16377830	+	0	NA	intron (NM_021235, intron 21 of 22)	intron (NM_021235, intron 21 of 22)	52924	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
155717	chr22	39121771	39122530	+	0	NA	Intergenic	AluJr4|SINE|Alu	24906	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
95169	chr17	35160201	35162330	+	0	NA	intron (NM_173167, intron 7 of 18)	Tigger11a|DNA|TcMar-Tigger	13001	NM_173167	146862		NM_173167	ENSG00000141161	UNC45B	CMYA4|CTRCT43|MFM11|SMUNC45|UNC-45B|UNC45	unc-45 myosin chaperone B	protein-coding
91161	chr17	3786671	3787030	+	0	NA	intron (NM_002208, intron 1 of 30)	AluSc|SINE|Alu	14338	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
235975	chrX	53715771	53715930	+	0	NA	Intergenic	MamGyp-int|LTR|Gypsy	-29131	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
58948	chr13	19777851	19778650	+	0	NA	intron (NM_001354909, intron 1 of 8)	AluSc|SINE|Alu	4695	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
222828	chr8	142482901	142483100	+	0	NA	intron (NM_001702, intron 11 of 30)	intron (NM_001702, intron 11 of 30)	33351	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
22292	chr1	212857421	212859080	+	0	NA	promoter-TSS (NM_014053)	promoter-TSS (NM_014053)	-25	NM_014053	28982		NM_014053	ENSG00000162769	FLVCR1	AXPC1|FLVCR|MFSD7B|PCA|PCARP|SLC49A1	FLVCR choline and heme transporter 1	protein-coding
39024	chr11	47754751	47755850	+	0	NA	intron (NM_015308, intron 2 of 16)	AluSp|SINE|Alu	12041	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
199279	chr6	111870021	111870480	+	0	NA	intron (NM_002037, intron 1 of 13)	MLT1J2|LTR|ERVL-MaLR	2821	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
75266	chr15	65027371	65027530	+	0	NA	intron (NM_139242, intron 1 of 8)	AluSz|SINE|Alu	2189	NM_139242	123263		NM_139242	ENSG00000103707	MTFMT	COXPD15|FMT1|MC1DN27	mitochondrial methionyl-tRNA formyltransferase	protein-coding
225725	chr9	37002351	37002850	+	0	NA	intron (NM_001280553, intron 4 of 7)	CpG	31668	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
88133	chr16	81618571	81618930	+	0	NA	intron (NM_030629, intron 2 of 20)	MER63A|DNA|hAT-Blackjack	7402	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
103178	chr17	77442921	77443330	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-7624	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
155560	chr22	38726721	38727230	+	0	NA	intron (NM_004286, intron 8 of 11)	intron (NM_004286, intron 8 of 11)	21031	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
34116	chr10	126947401	126947600	+	0	NA	intron (NM_001377548, intron 1 of 50)	intron (NM_001377548, intron 1 of 50)	42072	NM_001377556	1793		NM_001380	ENSG00000150760	DOCK1	DOCK180|ced5	dedicator of cytokinesis 1	protein-coding
211765	chr7	107209421	107209680	+	0	NA	3' UTR (NM_001161520, exon 21 of 21)	3' UTR (NM_001161520, exon 21 of 21)	40547	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
236118	chrX	57453901	57454130	+	0	NA	intron (NR_148564, intron 11 of 11)	L1PA16|LINE|L1	-137996	NM_007157	158586		NM_007157	ENSG00000198455	ZXDB	ZNF905|dJ83L6.1	zinc finger X-linked duplicated B	protein-coding
49046	chr12	14388351	14389900	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	3844	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
94429	chr17	29139621	29141800	+	0	NA	promoter-TSS (NM_001346768)	promoter-TSS (NM_001346768)	-321	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
23277	chr1	227967851	227968530	+	0	NA	TTS (NR_153418)	TTS (NR_153418)	1179	NR_153418	107985355		NR_153418		LOC107985355	-	uncharacterized LOC107985355	ncRNA
134131	chr2	134151571	134151730	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	24525	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
157399	chr22	44808321	44808580	+	0	NA	intron (NM_181335, intron 4 of 11)	intron (NM_181335, intron 4 of 11)	55875	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
117319	chr19	19510301	19511200	+	0	NA	Intergenic	Intergenic	4798	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
114366	chr19	12439471	12440300	+	0	NA	intron (NM_005815, intron 1 of 3)	intron (NM_005815, intron 1 of 3)	1136	NM_005815	10224		NM_005815	ENSG00000180855	ZNF443	ZK1	zinc finger protein 443	protein-coding
213447	chr7	138745201	138745400	+	0	NA	intron (NM_130840, intron 12 of 20)	intron (NM_130840, intron 12 of 20)	28737	NM_130841	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
237886	chrX	131664351	131664450	+	0	NA	Intergenic	L1PA2|LINE|L1	120326	NM_001004486	347468		NM_001004486	ENSG00000171054	OR13H1	ORX1	olfactory receptor family 13 subfamily H member 1	protein-coding
22561	chr1	222633601	222633800	+	0	NA	intron (NM_001324062, intron 6 of 28)	intron (NM_001324062, intron 6 of 28)	-10603	NM_001324065	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
221853	chr8	128276971	128277130	+	0	NA	Intergenic	Intergenic	126934	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
72199	chr15	30136421	30136680	+	0	NA	intron (NM_001355469, intron 1 of 18).8	intron (NM_001355469, intron 1 of 18).8	1499	NM_001355469	653075		NM_001355469	ENSG00000261247	GOLGA8T	-	golgin A8 family member T	protein-coding
155689	chr22	39076721	39077650	+	0	NA	promoter-TSS (NM_021822)	promoter-TSS (NM_021822)	-90	NR_146179	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
166968	chr3	125511871	125512680	+	0	NA	intron (NM_003794, intron 1 of 13)	intron (NM_003794, intron 1 of 13)	7927	NR_073435	8723		NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
193263	chr6	29956551	29957430	+	0	NA	Intergenic	Intergenic	14458	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
58771	chr12	132708871	132709330	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1742	NM_001170544	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
146314	chr20	49205501	49205700	+	0	NA	intron (NM_001319135, intron 1 of 14)	AluSg|SINE|Alu	13695	NM_001319135	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
16686	chr1	155198971	155199430	+	0	NA	intron (NM_007112, intron 16 of 22)	AluY|SINE|Alu	4023	NR_030281	693235		NR_030281	ENSG00000284586	MIR92B	MIRN92B|hsa-mir-92b|mir-92b	microRNA 92b	ncRNA
145561	chr20	44272401	44272600	+	0	NA	intron (NM_024034, intron 5 of 5)	L2c|LINE|L2	25192	NM_024034	78997		NM_024034	ENSG00000124194	GDAP1L1	dJ881L22.1|dJ995J12.1.1	ganglioside induced differentiation associated protein 1 like 1	protein-coding
92296	chr17	8109771	8111100	+	0	NA	exon (NM_001369446, exon 8 of 15)	exon (NM_001369446, exon 8 of 15)	7868	NM_001369446	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
53638	chr12	68200651	68201150	+	0	NA	TTS (NM_018402)	TTS (NM_018402)	24910	NM_018402	55801		NM_018402	ENSG00000111536	IL26	AK155|IL-26	interleukin 26	protein-coding
203969	chr7	1566671	1567480	+	0	NA	TTS (NM_032302)	TTS (NM_032302)	2957	NM_032302	84262		NM_032302	ENSG00000157778	PSMG3	C7orf48|PAC3	proteasome assembly chaperone 3	protein-coding
14785	chr1	146080771	146081130	+	0	NA	intron (NM_001302371, intron 71 of 89)	(GA)n|Simple_repeat|Simple_repeat	28354	NR_125967	101928979		NR_125967		LINC01719	-	long intergenic non-protein coding RNA 1719	ncRNA
123084	chr19	51393901	51394800	+	0	NA	Intergenic	Intergenic	-3759	NR_126530	147646		NM_001193623	ENSG00000262874	C19orf84	-	chromosome 19 open reading frame 84	protein-coding
133967	chr2	130692951	130693650	+	0	NA	Intergenic	AluY|SINE|Alu	13250	NR_023391	100132708		NM_032248	ENSG00000290699	CYP4F30P	C2orf14	cytochrome P450 family 4 subfamily F member 30, pseudogene	pseudo
110422	chr19	1966151	1966250	+	0	NA	intron (NM_001319, intron 1 of 11)	Tigger1|DNA|TcMar-Tigger	-11651	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
67365	chr14	69726601	69727850	+	0	NA	Intergenic	CpG	-39917	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
147958	chr20	62967901	62968100	+	0	NA	3' UTR (NM_001302643, exon 14 of 14)	3' UTR (NM_001302643, exon 14 of 14)	15291	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
23757	chr1	232793821	232794150	+	0	NA	Intergenic	Intergenic	-11431	NM_019090	54627		NM_019090	ENSG00000212916	MAP10	KIAA1383|MTR120	microtubule associated protein 10	protein-coding
100705	chr17	63838751	63838850	+	0	NA	promoter-TSS (NM_001330440)	promoter-TSS (NM_001330440)	-72	NM_001330440	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
35597	chr11	1752701	1753380	+	0	NA	3' UTR (NM_001909, exon 9 of 9)	3' UTR (NM_001909, exon 9 of 9)	-2445	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
79145	chr16	252521	253280	+	0	NA	intron (NM_001284497, intron 2 of 12)	intron (NM_001284497, intron 2 of 12)	18079	NM_001284497	83986		NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding
72397	chr15	31387221	31388350	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	60950	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
196776	chr6	45586001	45587400	+	0	NA	Intergenic	Intergenic	164425	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
9143	chr1	45507221	45507680	+	0	NA	exon (NM_001330540, exon 2 of 4)	exon (NM_001330540, exon 2 of 4)	7150	NM_001330540	25974		NM_015506	ENSG00000132763	MMACHC	cblC	metabolism of cobalamin associated C	protein-coding
148393	chr20	63930821	63931280	+	0	NA	intron (NM_025219, intron 4 of 4)	intron (NM_025219, intron 4 of 4)	10494	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
176457	chr4	89301901	89302430	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	5635	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
95678	chr17	38350451	38350750	+	0	NA	Intergenic	Intergenic	-1244	NM_014598	30837		NM_014598	ENSG00000274211	SOCS7	NAP4|NCKAP4	suppressor of cytokine signaling 7	protein-coding
180395	chr5	10249341	10251180	+	0	NA	promoter-TSS (NM_001258389)	promoter-TSS (NM_001258389)	-20	NM_012073	22948		NM_012073	ENSG00000150753	CCT5	CCT-epsilon|CCTE|HEL-S-69|PNAS-102|TCP-1-epsilon	chaperonin containing TCP1 subunit 5	protein-coding
131806	chr2	98586651	98586750	+	0	NA	intron (NM_001134224, intron 25 of 25)	intron (NM_001134224, intron 25 of 25)	21812	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
67390	chr14	69786171	69786680	+	0	NA	intron (NM_003049, intron 1 of 4)	MIRb|SINE|MIR	10816	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
147608	chr20	62118901	62119430	+	0	NA	Intergenic	Intergenic	-3310	NM_144703	149986		NM_014054	ENSG00000149657	LSM14B	C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3	LSM family member 14B	protein-coding
50097	chr12	44847731	44848970	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	27311	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
46469	chr11	128296801	128297400	+	0	NA	Intergenic	Intergenic	88334	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
170228	chr3	184181271	184181430	+	0	NA	intron (NM_001025205, intron 6 of 10)	intron (NM_001025205, intron 6 of 10)	-4725	NM_018358	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
126073	chr2	25792901	25793100	+	0	NA	intron (NM_001369347, intron 1 of 9)	AluSz|SINE|Alu	1691	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
194474	chr6	33209821	33210330	+	0	NA	exon (NM_002931, exon 4 of 7).4	exon (NM_002931, exon 4 of 7).4	1575	NM_002931	6015		NM_002931	ENSG00000204227	RING1	RING1A|RNF1	ring finger protein 1	protein-coding
115542	chr19	15468871	15469030	+	0	NA	3' UTR (NM_001363546, exon 4 of 4)	3' UTR (NM_001363546, exon 4 of 4)	-4406	NM_001348027	64926		NM_022904	ENSG00000105122	RASAL3	-	RAS protein activator like 3	protein-coding
101198	chr17	65488471	65488780	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	31084	NR_131984	105827617		NR_131984	ENSG00000263520	LINC02563	CRAT40	long intergenic non-protein coding RNA 2563	ncRNA
58251	chr12	128797401	128798000	+	0	NA	intron (NM_145648, intron 7 of 7)	intron (NM_145648, intron 7 of 7)	26258	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
36174	chr11	3167221	3167480	+	0	NA	Intergenic	MIRc|SINE|MIR	-2040	NM_145638	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
65045	chr14	39188821	39189330	+	0	NA	Intergenic	AluJb|SINE|Alu	13821	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
218309	chr8	42544301	42544700	+	0	NA	intron (NM_001363186, intron 1 of 3)	intron (NM_001363186, intron 1 of 3)	-2546	NM_006749	6575		NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC2|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
200137	chr6	130263071	130263430	+	0	NA	intron (NM_001258275, intron 2 of 13)	Harlequin-int|LTR|ERV1	-40299	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
44386	chr11	102731071	102731230	+	0	NA	Intergenic	Intergenic	-6196	NM_001304442	4317		NM_002424	ENSG00000118113	MMP8	CLG1|HNC|MMP-8|PMNL-CL	matrix metallopeptidase 8	protein-coding
130139	chr2	74840221	74841100	+	0	NA	intron (NM_001371525, intron 1 of 17)	AluSc8|SINE|Alu	5490	NM_001371525	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
182093	chr5	56012021	56013330	+	0	NA	Intergenic	MIR|SINE|MIR	17508	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
114730	chr19	13191371	13191530	+	0	NA	Intergenic	MIRc|SINE|MIR	41039	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
20184	chr1	193061971	193062330	+	0	NA	intron (NM_001042370, intron 1 of 9)	intron (NM_001042370, intron 1 of 9)	-2074	NM_001350852	51377		NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
201948	chr6	151702971	151703400	+	0	NA	intron (NM_001385570, intron 2 of 8)	intron (NM_001385570, intron 2 of 8)	12658	NM_001385570	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
149705	chr21	34022721	34023530	+	0	NA	Intergenic	Intergenic	46743	NR_134561	101928126		NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
127424	chr2	42131301	42131500	+	0	NA	Intergenic	Intergenic	-37953	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
209973	chr7	92799501	92799700	+	0	NA	intron (NM_001145306, intron 2 of 7)	Tigger12A|DNA|TcMar-Tigger	34359	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
128632	chr2	61368721	61369580	+	0	NA	intron (NM_014709, intron 10 of 79)	L1ME4b|LINE|L1	48227	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
103062	chr17	77245321	77245780	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-35949	NM_001293695	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
102631	chr17	76013851	76015130	+	0	NA	exon (NM_001988, exon 18 of 22)	exon (NM_001988, exon 18 of 22)	12816	NM_001320747	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
95367	chr17	35870551	35870950	+	0	NA	TTS (NM_001278736)	TTS (NM_001278736)	-1859	NR_135630	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
18954	chr1	168542721	168543280	+	0	NA	intron (NM_003175, intron 1 of 2)	intron (NM_003175, intron 1 of 2)	997	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
230408	chr9	128115571	128116430	+	0	NA	intron (NR_033374, intron 2 of 4)	intron (NR_033374, intron 2 of 4)	2734	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
113250	chr19	8500171	8500850	+	0	NA	intron (NM_032152, intron 1 of 9)	L2a|LINE|L2	2130	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
54997	chr12	96358371	96358880	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSx|SINE|Alu	41814	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
223287	chr8	143739651	143741130	+	0	NA	intron (NM_001381874, intron 3 of 13)	CpG-27738	6251	NM_001381874	642574		NM_001381874	ENSG00000203499	IQANK1	CACClnc|FAM83H-AS1|FAM83HAS1|onco-lncRNA-3	IQ motif and ankyrin repeat containing 1	protein-coding
73901	chr15	50682051	50682150	+	0	NA	intron (NR_149152, intron 1 of 38)	AluSq|SINE|Alu	4697	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
62706	chr13	102849271	102849430	+	0	NA	intron (NM_000123, intron 1 of 14)	intron (NM_000123, intron 1 of 14)	3318	NM_000123	2073		NM_000123	ENSG00000134899	ERCC5	COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC	ERCC excision repair 5, endonuclease	protein-coding
97047	chr17	42333221	42333480	+	0	NA	intron (NM_001369519, intron 10 of 23)	intron (NM_001369519, intron 10 of 23)	45294	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
5441	chr1	25573921	25574180	+	0	NA	Intergenic	L2a|LINE|L2	30444	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
15627	chr1	150630771	150630930	+	0	NA	Intergenic	AluSc|SINE|Alu	-1228	NM_207168	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
193686	chr6	31098801	31099000	+	0	NA	Intergenic	L1MB8|LINE|L1	13675	NM_014070	29113		NM_014070	ENSG00000204542	C6orf15	STG	chromosome 6 open reading frame 15	protein-coding
73372	chr15	42497901	42498100	+	0	NA	intron (NM_130798, intron 1 of 6)	THE1D-int|LTR|ERVL-MaLR	2366	NM_003825	8773		NM_003825	ENSG00000092531	SNAP23	HsT17016|SNAP-23|SNAP23A|SNAP23B	synaptosome associated protein 23	protein-coding
4767	chr1	23532301	23532580	+	0	NA	Intergenic	Intergenic	-1207	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
1944	chr1	6547501	6547700	+	0	NA	intron (NM_024654, intron 3 of 11)	AluJb|SINE|Alu	6913	NM_024654	79707		NM_024654	ENSG00000162408	NOL9	Grc3|NET6	nucleolar protein 9	protein-coding
59505	chr13	26914671	26914830	+	0	NA	Intergenic	Intergenic	-153964	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
92485	chr17	8861201	8861700	+	0	NA	intron (NR_110865, intron 1 of 19)	MER44C|DNA|TcMar-Tigger	6224	NM_001010855	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
57012	chr12	120584471	120585950	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3808	NM_015918	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
78766	chr15	99213201	99213500	+	0	NA	intron (NR_109947, intron 7 of 12)	intron (NR_109947, intron 7 of 12)	36231	NR_109947	64927		NM_022905	ENSG00000103852	TTC23	HCC-8	tetratricopeptide repeat domain 23	protein-coding
111209	chr19	3478521	3479500	+	0	NA	intron (NM_001136503, intron 1 of 3)	intron (NM_001136503, intron 1 of 3)	1515	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
82254	chr16	15113201	15113500	+	0	NA	intron (NR_123722, intron 11 of 17)	intron (NR_123722, intron 11 of 17)	18251	NR_123722	105369154		NR_123721	ENSG00000270580	PKD1P6-NPIPP1	-	PKD1P6-NPIPP1 readthrough	pseudo
165843	chr3	105852671	105852830	+	0	NA	intron (NR_135807, intron 3 of 20)	Tigger3b|DNA|TcMar-Tigger	14841	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
138491	chr2	207135101	207135900	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	-1363	NM_001270944	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
140372	chr2	232927851	232928750	+	0	NA	promoter-TSS (NM_001114090)	promoter-TSS (NM_001114090)	-149	NM_001114090	25791		NM_019850	ENSG00000066248	NGEF	ARHGEF27|EPHEXIN	neuronal guanine nucleotide exchange factor	protein-coding
214714	chr7	151007451	151007950	+	0	NA	intron (NM_000603, intron 17 of 26)	intron (NM_000603, intron 17 of 26)	13896	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
50129	chr12	45518421	45518950	+	0	NA	Intergenic	Intergenic	209236	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
138760	chr2	215920121	215920400	+	0	NA	Intergenic	Intergenic	-76724	NR_037195	646324		NR_037195	ENSG00000235770	LINC00607	-	long intergenic non-protein coding RNA 607	ncRNA
204261	chr7	2629621	2629880	+	0	NA	Intergenic	Intergenic	-2236	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
82432	chr16	16315451	16316000	+	0	NA	promoter-TSS (NR_146336)	promoter-TSS (NR_146336)	-497	NR_146336	110006323		NR_146336		PKD1P4-NPIPA8	-	PKD1P4-NPIPA8 readthrough	pseudo
190963	chr6	2942371	2943730	+	0	NA	Intergenic	MER83|LTR|ERV1	19080	NM_001271825	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
99564	chr17	50426911	50427880	+	0	NA	intron (NM_001288968, intron 2 of 16)	intron (NM_001288968, intron 2 of 16)	1177	NM_025149	80221		NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
94501	chr17	29301921	29302680	+	0	NA	Intergenic	Intergenic	-8152	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
216416	chr8	19013551	19014650	+	0	NA	promoter-TSS (NM_015310)	promoter-TSS (NM_015310)	-397	NM_015310	23362		NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
104552	chr17	81309251	81310050	+	0	NA	promoter-TSS (NR_038080)	promoter-TSS (NR_038080)	-402	NR_038080	284185		NM_178519		LINC00482	C17orf55	long intergenic non-protein coding RNA 482	ncRNA
207035	chr7	38910001	38910200	+	0	NA	promoter-TSS (NM_014396)	promoter-TSS (NM_014396)	-900	NM_080631	27072		NM_014396	ENSG00000006715	VPS41	HVPS41|HVSP41|SCAR29|hVps41p	VPS41 subunit of HOPS complex	protein-coding
81921	chr16	11745571	11746100	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-2978	NR_136671	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
186864	chr5	139479101	139479700	+	0	NA	intron (NM_198282, intron 5 of 7)	MIRb|SINE|MIR	3358	NM_001367258	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
85929	chr16	57127421	57127930	+	0	NA	intron (NM_152727, intron 11 of 15)	intron (NM_152727, intron 11 of 15)	35092	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
185336	chr5	126837821	126838150	+	0	NA	TTS (NM_001198557)	TTS (NM_001198557)	60849	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
15974	chr1	151909311	151910630	+	0	NA	promoter-TSS (NM_053055)	promoter-TSS (NM_053055)	-459	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
225892	chr9	39733071	39733250	+	0	NA	Intergenic	Intergenic	76999	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
13343	chr1	113809921	113810350	+	0	NA	intron (NM_018364, intron 1 of 6)	intron (NM_018364, intron 1 of 6)	2341	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
214613	chr7	150716171	150717250	+	0	NA	promoter-TSS (NM_130759)	promoter-TSS (NM_130759)	97	NM_130759	170575		NM_130759	ENSG00000213203	GIMAP1	HIMAP1|IAN2|IMAP1|IMAP38	GTPase, IMAP family member 1	protein-coding
199246	chr6	111836621	111837400	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	36061	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
148099	chr20	63326521	63328080	+	0	NA	intron (NM_020882, intron 31 of 35)	intron (NM_020882, intron 31 of 35)	-32688	NR_110634	100130587		NR_110634	ENSG00000203900	LOC100130587	-	uncharacterized LOC100130587	ncRNA
189889	chr5	177332251	177332350	+	0	NA	intron (NM_006816, intron 7 of 7)	CpG	19368	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
194102	chr6	31944951	31945600	+	0	NA	promoter-TSS (NM_001710).3	promoter-TSS (NM_001710).3	-820	NM_001710	629		NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
232707	chr9	136563151	136563900	+	0	NA	Intergenic	Intergenic	15683	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
98658	chr17	47832901	47833780	+	0	NA	intron (NM_033413, intron 2 of 7)	L2c|LINE|L2	1670	NM_033413	90506		NM_033413	ENSG00000141294	LRRC46	-	leucine rich repeat containing 46	protein-coding
229647	chr9	124257271	124258900	+	0	NA	promoter-TSS (NM_001166168)	promoter-TSS (NM_001166168)	136	NM_014397	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
102709	chr17	76154821	76155280	+	0	NA	TTS (NR_040017)	TTS (NR_040017)	-13805	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
131587	chr2	96861321	96861580	+	0	NA	exon (NM_017789, exon 15 of 15)	exon (NM_017789, exon 15 of 15)	-3434	NM_016466	51239		NM_016466	ENSG00000213337	ANKRD39	-	ankyrin repeat domain 39	protein-coding
201589	chr6	149341971	149342130	+	0	NA	intron (NM_015093, intron 2 of 8)	intron (NM_015093, intron 2 of 8)	23750	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
88880	chr16	87707601	87708200	+	0	NA	TTS (NM_001351938)	TTS (NM_001351938)	58086	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
55271	chr12	102883251	102883500	+	0	NA	intron (NM_001354304, intron 4 of 13)	intron (NM_001354304, intron 4 of 13)	33869	NM_000277	5053		NM_000277	ENSG00000171759	PAH	PH|PKU|PKU1	phenylalanine hydroxylase	protein-coding
89737	chr16	89434371	89434530	+	0	NA	intron (NR_110932, intron 1 of 2)	intron (NR_110932, intron 1 of 2)	3532	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
51279	chr12	51203771	51203930	+	0	NA	3' UTR (NM_001351088, exon 3 of 3)	3' UTR (NM_001351088, exon 3 of 3)	13455	NM_001368008	5463		NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
109372	chr19	644621	645300	+	0	NA	TTS (NM_020637)	TTS (NM_020637)	5065	NM_001300812	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
218003	chr8	38409701	38409980	+	0	NA	TTS (NM_001286787)	TTS (NM_001286787)	22709	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
75480	chr15	66252201	66252680	+	0	NA	intron (NR_169558, intron 1 of 22)	CpG	1310	NR_169556	84465		NM_032445	ENSG00000157890	MEGF11	-	multiple EGF like domains 11	protein-coding
182399	chr5	61329151	61330050	+	0	NA	Intergenic	Intergenic	-2658	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
136642	chr2	179302901	179303100	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-38168	NM_178123	91404		NM_178123	ENSG00000187231	SESTD1	SOLO	SEC14 and spectrin domain containing 1	protein-coding
148142	chr20	63493671	63494080	+	0	NA	intron (NM_001958, intron 4 of 7)	intron (NM_001958, intron 4 of 7)	5208	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
42551	chr11	71780301	71780500	+	0	NA	Intergenic	Intergenic	33459	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
215088	chr7	155007921	155008280	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	4667	NR_028090	202781		NR_028090	ENSG00000273344	PAXIP1-DT	PAXIP1-AS1	PAXIP1 divergent transcript	ncRNA
76515	chr15	75021971	75022230	+	0	NA	TTS (NM_001178112)	TTS (NM_001178112)	-1490	NM_021823	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
201660	chr6	149494051	149494150	+	0	NA	Intergenic	Intergenic	-9086	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
126379	chr2	27491851	27492500	+	0	NA	3' UTR (NM_022823, exon 7 of 7)	3' UTR (NM_022823, exon 7 of 7)	-2432	NM_015662	26160		NM_015662	ENSG00000138002	IFT172	BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim	intraflagellar transport 172	protein-coding
227449	chr9	90758451	90758950	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-42900	NM_001174168	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
39394	chr11	60485971	60486230	+	0	NA	Intergenic	Intergenic	-6678	NM_017716	54860		NM_017716	ENSG00000071203	MS4A12	Ms4a10	membrane spanning 4-domains A12	protein-coding
132135	chr2	101714051	101714350	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	15935	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
101166	chr17	65117121	65117380	+	0	NA	Intergenic	L2c|LINE|L2	16438	NR_110801	100507002		NR_110801		LOC100507002	-	uncharacterized LOC100507002	ncRNA
123317	chr19	53578671	53578830	+	0	NA	3' UTR (NM_001253801, exon 5 of 5)	3' UTR (NM_001253801, exon 5 of 5)	23443	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
138517	chr2	207285701	207285900	+	0	NA	Intergenic	Intergenic	-16376	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA
208519	chr7	70307601	70308080	+	0	NA	intron (NM_015570, intron 4 of 18)	L4_C_Mam|LINE|RTE-X	709365	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
30822	chr10	86364151	86364830	+	0	NA	intron (NM_017551, intron 1 of 15)	CpG-3093	2305	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
173551	chr4	10087001	10087400	+	0	NA	intron (NM_017491, intron 8 of 14)	intron (NM_017491, intron 8 of 14)	-8508	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
30993	chr10	88118201	88118480	+	0	NA	Intergenic	MIRb|SINE|MIR	254715	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
1413	chr1	2564051	2564380	+	0	NA	3' UTR (NM_003820, exon 8 of 8).2	3' UTR (NM_003820, exon 8 of 8).2	-2320	NR_121638	100996583		NR_121638	ENSG00000228037	LOC100996583	-	uncharacterized LOC100996583	ncRNA
192281	chr6	20421651	20421850	+	0	NA	intron (NM_001243076, intron 1 of 6)	7SLRNA|srpRNA|srpRNA	18071	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
193328	chr6	30183721	30184180	+	0	NA	TTS (NM_003449).3	TTS (NM_003449).3	20404	NM_033229	89870		NM_033229	ENSG00000204610	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
78562	chr15	93017051	93017630	+	0	NA	intron (NM_001271, intron 37 of 38)	AluSx|SINE|Alu	55816	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
91667	chr17	5533851	5534150	+	0	NA	intron (NM_033006, intron 7 of 15)	intron (NM_033006, intron 7 of 15)	-32994	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
74957	chr15	63815621	63815880	+	0	NA	intron (NM_003922, intron 1 of 77)	THE1C|LTR|ERVL-MaLR	18198	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
166947	chr3	125211771	125212280	+	0	NA	promoter-TSS (NM_001195483)	promoter-TSS (NM_001195483)	-626	NM_001195483	84561		NM_024628	ENSG00000221955	SLC12A8	CCC9	solute carrier family 12 member 8	protein-coding
156250	chr22	40403671	40404030	+	0	NA	intron (NR_146414, intron 4 of 21)	L2a|LINE|L2	33256	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
6002	chr1	27001801	27002400	+	0	NA	Intergenic	Intergenic	8408	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
127209	chr2	38587821	38588630	+	0	NA	intron (NM_138394, intron 2 of 12)	intron (NM_138394, intron 2 of 12)	14703	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
53014	chr12	57529171	57529700	+	0	NA	TTS (NM_006400)	TTS (NM_006400)	6611	NM_052897	114785		NM_052897	ENSG00000166987	MBD6	-	methyl-CpG binding domain protein 6	protein-coding
106454	chr18	13729801	13730000	+	0	NA	intron (NM_001378134, intron 1 of 10)	AluJb|SINE|Alu	3227	NM_001378134	8731		NM_003799	ENSG00000101654	RNMT	CMT1|CMT1c|MET|Met|N7-MTase|RG7MT1|cm1p|hCMT1|hMet	RNA guanine-7 methyltransferase	protein-coding
139993	chr2	230931171	230932000	+	0	NA	Intergenic	MIR|SINE|MIR	-6343	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
213468	chr7	138982771	138982930	+	0	NA	Intergenic	Intergenic	-1461	NM_020910	57670		NM_020910	ENSG00000122778	KIAA1549	RP86	KIAA1549	protein-coding
146251	chr20	48904671	48905650	+	0	NA	Intergenic	Intergenic	-16551	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
160216	chr3	23928651	23929030	+	0	NA	intron (NM_001377380, intron 1 of 4)	AluSx|SINE|Alu	11708	NM_001253383	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
11327	chr1	89465201	89466130	+	0	NA	Intergenic	MIRc|SINE|MIR	57986	NR_003133	400759		NR_003133	ENSG00000290525	GBP1P1	LIMIT	guanylate binding protein 1 pseudogene 1	pseudo
104756	chr17	81691351	81691450	+	0	NA	intron (NM_004712, intron 7 of 21)	intron (NM_004712, intron 7 of 21)	-2357	NR_106844	102465471		NR_106844	ENSG00000277784	MIR6786	hsa-mir-6786	microRNA 6786	ncRNA
103236	chr17	77500921	77501600	+	0	NA	TTS (NM_001113492)	TTS (NM_001113492)	25625	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
222104	chr8	131635551	131635650	+	0	NA	Intergenic	L1PA3|LINE|L1	-268493	NM_001323553	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
89620	chr16	89312771	89313330	+	0	NA	intron (NM_013275, intron 3 of 12)	intron (NM_013275, intron 3 of 12)	-7402	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
212151	chr7	116671821	116672400	+	0	NA	promoter-TSS (NM_000245)	promoter-TSS (NM_000245)	-86	NM_000245	4233		NM_000245	ENSG00000105976	MET	AUTS9|DA11|DFNB97|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding
187173	chr5	140641051	140641350	+	0	NA	intron (NM_018502, intron 2 of 11)	L2b|LINE|L2	1749	NM_018502	55374		NM_018502	ENSG00000113119	TMCO6	PRO1580	transmembrane and coiled-coil domains 6	protein-coding
201355	chr6	144657771	144658280	+	0	NA	intron (NM_001375323, intron 1 of 24)	intron (NM_001375323, intron 1 of 24)	74877	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
220569	chr8	100794771	100794930	+	0	NA	Intergenic	L1MC4a|LINE|L1	-72762	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
78291	chr15	90887171	90887330	+	0	NA	exon (NM_002005, exon 5 of 19)	exon (NM_002005, exon 5 of 19)	2204	NM_001143784	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
10759	chr1	77126351	77126530	+	0	NA	intron (NM_005482, intron 9 of 10)	L1MC4|LINE|L1	66297	NR_106978	102466995		NR_106978	ENSG00000276081	MIR7156	hsa-mir-7156	microRNA 7156	ncRNA
157871	chr22	49659071	49659830	+	0	NA	Intergenic	Intergenic	-1931	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
97110	chr17	42494721	42495280	+	0	NA	TTS (NR_049845)	TTS (NR_049845)	227	NR_049845	100847030		NR_049845	ENSG00000264314	MIR548AT	-	microRNA 548at	ncRNA
34093	chr10	125227901	125228650	+	0	NA	Intergenic	CpG	-67245	NM_001083914	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
70057	chr14	100136951	100137600	+	0	NA	intron (NM_016337, intron 9 of 13)	intron (NM_016337, intron 9 of 13)	22370	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
192000	chr6	16319651	16321150	+	0	NA	intron (NM_000332, intron 8 of 8)	intron (NM_000332, intron 8 of 8)	81813	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
184875	chr5	112532921	112533380	+	0	NA	Intergenic	L1MD3|LINE|L1	-95286	NR_104672	102467214		NR_104672	ENSG00000250358	LINC02200	-	long intergenic non-protein coding RNA 2200	ncRNA
60253	chr13	40589071	40590130	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	77041	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
9685	chr1	52920351	52920750	+	0	NA	intron (NM_001319958, intron 1 of 9)	intron (NM_001319958, intron 1 of 9)	1190	NM_018281	55268		NM_018281	ENSG00000121310	ECHDC2	-	enoyl-CoA hydratase domain containing 2	protein-coding
6492	chr1	28417471	28418050	+	0	NA	intron (NM_001350160, intron 3 of 14)	intron (NM_001350160, intron 3 of 14)	-20390	NM_023923	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
110657	chr19	2246951	2247580	+	0	NA	intron (NM_007165, intron 7 of 8)	intron (NM_007165, intron 7 of 8)	-2058	NM_000479	268		NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
198264	chr6	99536151	99536450	+	0	NA	Intergenic	AluSz6|SINE|Alu	15251	NM_001195131	100130890		NM_001195131	ENSG00000279170	TSTD3	-	thiosulfate sulfurtransferase like domain containing 3	protein-coding
141374	chr2	240694321	240694580	+	0	NA	exon (NM_198998, exon 3 of 4)	exon (NM_198998, exon 3 of 4)	2584	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
184340	chr5	96955421	96955850	+	0	NA	intron (NM_005575, intron 1 of 17)	AluSz|SINE|Alu	-2798	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
52357	chr12	55636321	55636580	+	0	NA	promoter-TSS (NM_206899)	promoter-TSS (NM_206899)	-442	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
53837	chr12	69569651	69569950	+	0	NA	intron (NM_001278357, intron 3 of 6)	intron (NM_001278357, intron 3 of 6)	-14923	NR_037476	100500868		NR_037476	ENSG00000283677	MIR3913-2	mir-3913-2	microRNA 3913-2	ncRNA
211449	chr7	105079521	105080200	+	0	NA	intron (NM_182931, intron 12 of 26)	AluJo|SINE|Alu	65655	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
220680	chr8	101203501	101203700	+	0	NA	intron (NM_001042510, intron 1 of 4)	intron (NM_001042510, intron 1 of 4)	2073	NM_016096	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
74435	chr15	59327901	59328150	+	0	NA	intron (NM_004998, intron 1 of 27)	intron (NM_004998, intron 1 of 27)	44846	NM_004998	4643		NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
91378	chr17	4558701	4558900	+	0	NA	exon (NM_001122890, exon 4 of 4)	exon (NM_001122890, exon 4 of 4)	1777	NM_001288703	124975		NM_153338	ENSG00000167741	GGT6	-	gamma-glutamyltransferase 6	protein-coding
182520	chr5	65480271	65480880	+	0	NA	intron (NM_197941, intron 1 of 24)	intron (NM_197941, intron 1 of 24)	1345	NR_135689	11174		NM_014273	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein-coding
239143	chrY	11323871	11324030	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1097640	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
120186	chr19	42271671	42271830	+	0	NA	intron (NM_001379480, intron 1 of 20)	intron (NM_001379480, intron 1 of 20)	2498	NM_001379482	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
68616	chr14	89631151	89631450	+	0	NA	Intergenic	Intergenic	-12135	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
29764	chr10	72245871	72246650	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-27664	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
147870	chr20	62823671	62824100	+	0	NA	intron (NM_001853, intron 10 of 31)	intron (NM_001853, intron 10 of 31)	6835	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
200028	chr6	129678371	129678730	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	31627	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
110907	chr19	2761501	2761900	+	0	NA	intron (NM_003021, intron 7 of 11)	CpG	21573	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
24701	chr1	247326501	247327300	+	0	NA	intron (NM_032752, intron 5 of 9)	intron (NM_032752, intron 5 of 9)	4967	NM_032752	84838		NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
237550	chrX	120560101	120561900	+	0	NA	promoter-TSS (NM_001079872)	promoter-TSS (NM_001079872)	-38	NM_001079872	8450		NM_003588	ENSG00000158290	CUL4B	CUL-4B|MRXHF2|MRXS15|MRXSC|SFM2	cullin 4B	protein-coding
85205	chr16	47037451	47038380	+	0	NA	Intergenic	CpG	-64241	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
147345	chr20	58236751	58237480	+	0	NA	intron (NR_003505, intron 14 of 16)	intron (NR_003505, intron 14 of 16)	-8462	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
231178	chr9	129902171	129902550	+	0	NA	intron (NM_001363755, intron 13 of 15)	AluJr|SINE|Alu	32755	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
176622	chr4	99563101	99564210	+	0	NA	promoter-TSS (NM_152292)	promoter-TSS (NM_152292)	68	NM_152292	93587		NM_152292	ENSG00000145331	TRMT10A	HEL-S-88|MSSGM|MSSGM1|RG9MTD2|TRM10	tRNA methyltransferase 10A	protein-coding
222565	chr8	140618621	140619080	+	0	NA	intron (NM_012154, intron 1 of 18)	L1ME4a|LINE|L1	16783	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
15730	chr1	151056001	151056900	+	0	NA	intron (NM_020239, intron 1 of 4)	intron (NM_020239, intron 1 of 4)	3172	NM_020239	56882		NM_020239	ENSG00000197622	CDC42SE1	SCIP1|SPEC1	CDC42 small effector 1	protein-coding
171885	chr4	783351	783900	+	0	NA	Intergenic	MER31A|LTR|ERV1	-1777	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
152720	chr22	21656021	21656680	+	0	NA	intron (NR_169731, intron 3 of 3)	AluSx|SINE|Alu	-1410	NR_169732	107985532		NR_169729		LOC107985532	-	uncharacterized LOC107985532	pseudo
40409	chr11	64100551	64100650	+	0	NA	intron (NM_001384466, intron 1 of 2)	intron (NM_001384466, intron 1 of 2)	63918	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
77	chr1	292021	292580	+	0	NA	Intergenic	Intergenic	-85703	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
148077	chr20	63292071	63292230	+	0	NA	Intergenic	Intergenic	-1036	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
108255	chr18	63229951	63230530	+	0	NA	intron (NM_000633, intron 2 of 2)	L1ME3Cz|LINE|L1	89529	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
239392	chrY	21256771	21257180	+	0	NA	Intergenic	L1PA14|LINE|L1	129385	NM_001282471	100533178		NM_001282471		PRORY	CYorf17	PRORY Y-linked lncRNA	ncRNA
213837	chr7	141703251	141703650	+	0	NA	TTS (NR_015392)	TTS (NR_015392)	-1284	NM_001080392	57189		NM_001080392	ENSG00000257093	DENND11	KIAA1147|LCHN|PRO2561	DENN domain containing 11	protein-coding
196572	chr6	44145671	44146200	+	0	NA	intron (NM_001318792, intron 10 of 23)	intron (NM_001318792, intron 10 of 23)	-12885	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105482	chr17	83074271	83074430	+	0	NA	Intergenic	Intergenic	-5259	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
44718	chr11	111736551	111736850	+	0	NA	intron (NM_181700, intron 13 of 13)	intron (NM_181700, intron 13 of 13)	29689	NM_001177562	5519		NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
49274	chr12	19572971	19573230	+	0	NA	Intergenic	L1PREC2|LINE|L1	132501	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
178815	chr4	153526401	153526950	+	0	NA	intron (NM_015196, intron 3 of 34)	AluY|SINE|Alu	60315	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
115746	chr19	16313871	16314430	+	0	NA	Intergenic	L1MB5|LINE|L1	-10676	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
182377	chr5	60959251	60959350	+	0	NA	intron (NM_174889, intron 1 of 3)	intron (NM_174889, intron 1 of 3)	14095	NM_174889	91942		NM_174889	ENSG00000164182	NDUFAF2	B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin	NADH:ubiquinone oxidoreductase complex assembly factor 2	protein-coding
130248	chr2	84845821	84847750	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	34299	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
46593	chr11	128521711	128523650	+	0	NA	promoter-TSS (NM_001330451)	promoter-TSS (NM_001330451)	290	NR_106738	102466104		NR_106738	ENSG00000276176	MIR6090	hsa-mir-6090	microRNA 6090	ncRNA
126397	chr2	27586871	27587380	+	0	NA	intron (NM_001271286, intron 2 of 12)	L1ME1|LINE|L1	4083	NM_032434	84450		NM_032434	ENSG00000243943	ZNF512	-	zinc finger protein 512	protein-coding
142721	chr20	8853801	8854030	+	0	NA	intron (NM_182734, intron 32 of 32)	intron (NM_182734, intron 32 of 32)	22730	NR_004386	26767		NR_004386	ENSG00000201348	RNU105B	105B|E1-2	RNA, U105B small nucleolar	snoRNA
232882	chr9	136835601	136835880	+	0	NA	intron (NM_024718, intron 7 of 14)	intron (NM_024718, intron 7 of 14)	4783	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
2482	chr1	9670051	9670630	+	0	NA	intron (NM_005026, intron 1 of 23)	intron (NM_005026, intron 1 of 23)	-15754	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
111424	chr19	3784651	3784980	+	0	NA	intron (NM_139355, intron 3 of 13)	intron (NM_139355, intron 3 of 13)	1566	NM_139355	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
125464	chr2	12294001	12294480	+	0	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	95110	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
196465	chr6	43521021	43521280	+	0	NA	intron (NM_001363658, intron 8 of 9)	intron (NM_001363658, intron 8 of 9)	4061	NM_203290	9533		NM_004875	ENSG00000171453	POLR1C	AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3	RNA polymerase I and III subunit C	protein-coding
222472	chr8	140097951	140101250	+	0	NA	non-coding (NR_144431, exon 1 of 1)	non-coding (NR_144431, exon 1 of 1)	935	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
208471	chr7	66993701	66993980	+	0	NA	intron (NM_016038, intron 2 of 4)	AluSx1|SINE|Alu	1746	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
93557	chr17	19075271	19075430	+	0	NA	Intergenic	L2a|LINE|L2	-11214	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
170110	chr3	183165251	183165350	+	0	NA	Intergenic	AluY|SINE|Alu	-2566	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
41916	chr11	67282571	67283500	+	0	NA	intron (NM_001619, intron 14 of 20)	intron (NM_001619, intron 14 of 20)	-6268	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
89571	chr16	89261221	89261730	+	0	NA	Intergenic	L1M4|LINE|L1	-34653	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
155332	chr22	38220101	38220300	+	0	NA	3' UTR (NM_012264, exon 9 of 9)	3' UTR (NM_012264, exon 9 of 9)	4520	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
5653	chr1	26286451	26286550	+	0	NA	intron (NM_001077262, intron 4 of 10)	MIR|SINE|MIR	6414	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
216325	chr8	13033971	13034130	+	0	NA	Intergenic	Intergenic	21786	NM_001099677	57604		NM_020844	ENSG00000250305	TRMT9B	C8orf79|KIAA1456|TRM9L|hTRM9L	tRNA methyltransferase 9B (putative)	protein-coding
213496	chr7	139056071	139056630	+	0	NA	intron (NM_020119, intron 9 of 12)	intron (NM_020119, intron 9 of 12)	-12193	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
77374	chr15	82833471	82834230	+	0	NA	3' UTR (NM_001080435, exon 10 of 10)	3' UTR (NM_001080435, exon 10 of 10)	24222	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
144892	chr20	36934101	36934500	+	0	NA	intron (NM_001363733, intron 4 of 15)	AluSg7|SINE|Alu	17408	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
162304	chr3	47417001	47417650	+	0	NA	exon (NM_012235, exon 17 of 23)	exon (NM_012235, exon 17 of 23)	36304	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
177235	chr4	108618951	108619620	+	0	NA	intron (NR_026968, intron 1 of 3)	intron (NR_026968, intron 1 of 3)	1172	NR_026968	285456		NM_182591	ENSG00000234492	RPL34-DT	RPL34-AS1	RPL34 divergent transcript	ncRNA
162031	chr3	46682971	46683350	+	0	NA	exon (NM_001190707, exon 10 of 26)	exon (NM_001190707, exon 10 of 26)	10519	NM_147129	259173		NM_147129	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
163662	chr3	52218371	52219150	+	0	NA	Intergenic	Intergenic	7403	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
189253	chr5	172041421	172041850	+	0	NA	TTS (NM_005990)	TTS (NM_005990)	-34997	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
61106	chr13	48454601	48454800	+	0	NA	intron (NM_000321, intron 18 of 26)	L2a|LINE|L2	-10031	NM_005767	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
174061	chr4	26912671	26913400	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	52194	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
62502	chr13	99434101	99435380	+	0	NA	Intergenic	Intergenic	64566	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
34323	chr10	132160901	132161880	+	0	NA	intron (NM_001323090, intron 19 of 23)	intron (NM_001323090, intron 19 of 23)	-25558	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
20143	chr1	192577021	192577850	+	0	NA	intron (NM_002922, intron 3 of 4)	intron (NM_002922, intron 3 of 4)	1662	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
40670	chr11	64753001	64754350	+	0	NA	exon (NM_005609, exon 11 of 20)	exon (NM_005609, exon 11 of 20)	6299	NM_005609	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
152173	chr22	20088971	20089130	+	0	NA	intron (NM_022720, intron 3 of 13)	intron (NM_022720, intron 3 of 13)	2992	NR_031706	100302197		NR_031706	ENSG00000284464	MIR1306	MIRN1306|hsa-mir-1306|mir-1306	microRNA 1306	ncRNA
27975	chr10	42754151	42754700	+	0	NA	promoter-TSS (NR_134498)	promoter-TSS (NR_134498)	-717	NR_134498	105378269		NR_134498		LOC105378269	-	uncharacterized LOC105378269	ncRNA
170069	chr3	182910471	182910650	+	0	NA	intron (NM_014616, intron 28 of 29)	AluJr|SINE|Alu	69978	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
199122	chr6	111694401	111694600	+	0	NA	exon (NM_153048, exon 9 of 11)	exon (NM_153048, exon 9 of 11)	64631	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
76840	chr15	77493321	77493650	+	0	NA	Intergenic	L2a|LINE|L2	-32110	NR_135692	101929457		NR_135692	ENSG00000259362	LOC101929457	-	uncharacterized LOC101929457	ncRNA
80712	chr16	3086201	3086600	+	0	NA	Intergenic	Intergenic	12894	NM_001282415	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
32918	chr10	110218651	110218950	+	0	NA	intron (NM_001008541, intron 1 of 4)	intron (NM_001008541, intron 1 of 4)	-7196	NM_005962	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
211476	chr7	105108901	105109300	+	0	NA	exon (NM_018682, exon 22 of 26)	exon (NM_018682, exon 22 of 26)	94895	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
34475	chr10	132461571	132461730	+	0	NA	Intergenic	Intergenic	16461	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
214155	chr7	144437671	144437850	+	0	NA	Intergenic	Intergenic	-27533	NM_001080413	135935		NM_001080413	ENSG00000106410	NOBOX	OG-2|OG2|OG2X|POF5|TCAG_12042	NOBOX oogenesis homeobox	protein-coding
191133	chr6	4109471	4109730	+	0	NA	intron (NM_001085401, intron 3 of 5)	intron (NM_001085401, intron 3 of 5)	25868	NM_001166010	10455		NM_006117	ENSG00000198721	ECI2	ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3	enoyl-CoA delta isomerase 2	protein-coding
48639	chr12	10395301	10396380	+	0	NA	intron (NM_001199805, intron 4 of 12)	LTR41C|LTR|ERVL	-5799	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
194285	chr6	32660921	32661180	+	0	NA	TTS (NR_133907)	TTS (NR_133907)	1170	NR_133907	106480429		NR_133907	ENSG00000223534	HLA-DQB1-AS1	-	HLA-DQB1 antisense RNA 1	ncRNA
37653	chr11	22657201	22657700	+	0	NA	Intergenic	MER74C|LTR|ERVL	-9161	NM_001143830	2620		NM_005256	ENSG00000148935	GAS2	GAS-2	growth arrest specific 2	protein-coding
92761	chr17	15436721	15437030	+	0	NA	non-coding (NR_037924, exon 6 of 6)	non-coding (NR_037924, exon 6 of 6)	30746	NM_001204477	284040		NM_173622	ENSG00000239704	CDRT4	-	CMT1A duplicated region transcript 4	protein-coding
148226	chr20	63596271	63596430	+	0	NA	intron (NM_012384, intron 5 of 9)	intron (NM_012384, intron 5 of 9)	-22111	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
229668	chr9	124410271	124410700	+	0	NA	intron (NM_002799, intron 4 of 7)	intron (NM_002799, intron 4 of 7)	4957	NM_002799	5695		NM_002799	ENSG00000136930	PSMB7	-	proteasome 20S subunit beta 7	protein-coding
42237	chr11	68107901	68108100	+	0	NA	intron (NM_212469, intron 1 of 10)	intron (NM_212469, intron 1 of 10)	13388	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
113207	chr19	8451351	8452730	+	0	NA	intron (NM_031203, intron 1 of 16)	intron (NM_031203, intron 1 of 16)	7065	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
235641	chrX	48480421	48480880	+	0	NA	intron (NM_001282157, intron 2 of 8)	L2a|LINE|L2	4451	NM_177439	24140		NM_012280	ENSG00000068438	FTSJ1	CDLIV|JM23|MRX44|MRX9|SPB1|TRMT7|XLID9	FtsJ RNA 2'-O-methyltransferase 1	protein-coding
236220	chrX	65703051	65704450	+	0	NA	intron (NM_002444, intron 1 of 12)	AluSz6|SINE|Alu	36096	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
149936	chr21	36310001	36310400	+	0	NA	Intergenic	L1M8|LINE|L1	-9989	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
75982	chr15	70531471	70531830	+	0	NA	Intergenic	MIR3|SINE|MIR	-25722	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
25138	chr10	4131571	4132500	+	0	NA	Intergenic	Intergenic	80309	NR_120632								
233166	chr9	137179651	137180780	+	0	NA	exon (NM_013366, exon 10 of 13)	exon (NM_013366, exon 10 of 13)	-8159	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
59673	chr13	28718401	28719650	+	0	NA	promoter-TSS (NM_181785)	promoter-TSS (NM_181785)	-12	NM_001347960	283537		NM_181785	ENSG00000139508	SLC46A3	FKSG16	solute carrier family 46 member 3	protein-coding
121319	chr19	46757301	46758000	+	0	NA	3' UTR (NM_024301, exon 4 of 4)	3' UTR (NM_024301, exon 4 of 4)	-11200	NM_013403	29888		NM_013403	ENSG00000090372	STRN4	PPP2R6C|ZIN|zinedin	striatin 4	protein-coding
176400	chr4	88826151	88826250	+	0	NA	intron (NM_014883, intron 7 of 23)	intron (NM_014883, intron 7 of 23)	-2839	NM_001015045	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
133660	chr2	127056501	127056900	+	0	NA	intron (NM_139344, intron 11 of 17)	intron (NM_139344, intron 11 of 17)	25365	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
213331	chr7	135274371	135275130	+	0	NA	Intergenic	Intergenic	42771	NM_182489	346673		NM_182489	ENSG00000146857	STRA8	-	stimulated by retinoic acid 8	protein-coding
88705	chr16	85888571	85889130	+	0	NA	Intergenic	Intergenic	-10312	NM_002163	3394		NM_002163	ENSG00000140968	IRF8	H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8	interferon regulatory factor 8	protein-coding
69330	chr14	93337471	93337650	+	0	NA	intron (NR_144398, intron 1 of 1)	LTR2752|LTR|ERV1	4341	NR_144398	57578		NM_020818	ENSG00000133958	UNC79	KIAA1409	unc-79 homolog, NALCN channel complex subunit	protein-coding
98857	chr17	48471051	48471350	+	0	NA	Intergenic	AluJb|SINE|Alu	26367	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
6039	chr1	27118371	27118730	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	36575	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
168598	chr3	149152151	149152680	+	0	NA	intron (NM_032383, intron 6 of 16)	intron (NM_032383, intron 6 of 16)	22777	NM_032383	84343		NM_032383	ENSG00000163755	HPS3	BLOC2S1|SUTAL	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding
223051	chr8	143376851	143377500	+	0	NA	intron (NM_052924, intron 3 of 14)	(GT)n|Simple_repeat|Simple_repeat	8299	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
222	chr1	837771	837930	+	0	NA	intron (NR_047524, intron 2 of 3)	L1M4b|LINE|L1	10052	NR_047525	643837		NR_015368	ENSG00000228794	LINC01128	-	long intergenic non-protein coding RNA 1128	ncRNA
213004	chr7	131005151	131005680	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	91951	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
227765	chr9	93112401	93112850	+	0	NA	intron (NR_160511, intron 4 of 4)	intron (NR_160511, intron 4 of 4)	16408	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
36921	chr11	10804321	10804780	+	0	NA	intron (NM_001172705, intron 5 of 21)	intron (NM_001172705, intron 5 of 21)	-2942	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
157520	chr22	45343451	45343750	+	0	NA	TTS (NM_001291501)	TTS (NM_001291501)	25157	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
147521	chr20	59222121	59223000	+	0	NA	intron (NM_178457, intron 4 of 5)	intron (NM_178457, intron 4 of 5)	58739	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
110878	chr19	2633221	2633480	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	2635	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
163916	chr3	52620121	52620380	+	0	NA	intron (NM_181042, intron 15 of 29)	intron (NM_181042, intron 15 of 29)	65349	NM_001350074	55193		NM_018313	ENSG00000163939	PBRM1	BAF180|PB1|RCC|SMARCH1	polybromo 1	protein-coding
11097	chr1	85308171	85308780	+	0	NA	Intergenic	Intergenic	-31843	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
158045	chr22	49939571	49939730	+	0	NA	Intergenic	LTR9A1|LTR|ERV1	21016	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
128389	chr2	55047001	55047230	+	0	NA	5' UTR (NM_001321863, exon 1 of 9)	5' UTR (NM_001321863, exon 1 of 9)	211	NM_001321863	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133589	chr2	121697851	121697950	+	0	NA	intron (NR_037857, intron 2 of 3)	AluSp|SINE|Alu	38975	NM_032390	84365		NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
126891	chr2	32356301	32358530	+	0	NA	exon (NM_001378125, exon 1 of 74)	exon (NM_001378125, exon 1 of 74)	199	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
203587	chr7	921521	922400	+	0	NA	intron (NM_006869, intron 3 of 10)	intron (NM_006869, intron 3 of 10)	-1071	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
21839	chr1	207350051	207350350	+	0	NA	non-coding (NR_125349, exon 10 of 11)	non-coding (NR_125349, exon 10 of 11)	28522	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
25831	chr10	11213871	11214030	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	48920	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
217853	chr8	37782971	37783130	+	0	NA	Intergenic	AluJr|SINE|Alu	-13833	NM_032777	25960		NM_032777	ENSG00000020181	ADGRA2	GPR124|TEM5	adhesion G protein-coupled receptor A2	protein-coding
71799	chr15	21729821	21732180	+	0	NA	Intergenic	Intergenic	4999	NR_135666	646370		NR_135666		IGHV1OR15-3	IGHV1OR153	immunoglobulin heavy variable 1/OR15-3 (pseudogene)	pseudo
75791	chr15	68819771	68821500	+	0	NA	intron (NM_006305, intron 1 of 6)	CpG	260	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
43949	chr11	93652021	93652850	+	0	NA	Intergenic	UCON132b|DNA|hAT-Tip100	-9247	NM_033395	85459		NM_033395	ENSG00000166004	CEP295	KIAA1731|SCKL11	centrosomal protein 295	protein-coding
82930	chr16	21834021	21835100	+	0	NA	TTS (NM_130464).2	TTS (NM_130464).2	-14075	NM_001301064	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
49754	chr12	31740771	31741080	+	0	NA	Intergenic	Intergenic	-11751	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
182871	chr5	69851401	69851830	+	0	NA	intron (NR_029426, intron 1 of 9).2	L1PA16|LINE|L1	6803	NR_029426	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
100936	chr17	64478471	64478830	+	0	NA	intron (NM_007215, intron 7 of 7)	AluSx3|SINE|Alu	18404	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
198786	chr6	108900371	108900900	+	0	NA	intron (NM_001286609, intron 6 of 16)	intron (NM_001286609, intron 6 of 16)	23468	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
229940	chr9	126651801	126652000	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	37972	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
233198	chr9	137213771	137214430	+	0	NA	intron (NM_014434, intron 5 of 13)	intron (NM_014434, intron 5 of 13)	7223	NM_031297	727800		NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
60773	chr13	45122971	45123330	+	0	NA	intron (NM_004128, intron 1 of 7)	7SK|RNA|RNA	2640	NM_004128	2963		NM_004128	ENSG00000188342	GTF2F2	BTF4|RAP30|TF2F2|TFIIF	general transcription factor IIF subunit 2	protein-coding
65931	chr14	55348651	55349350	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	62830	NM_014924	22863		NM_014924	ENSG00000126775	ATG14	ATG14L|BARKOR|KIAA0831	autophagy related 14	protein-coding
61939	chr13	78607321	78607980	+	0	NA	intron (NR_047001, intron 5 of 5)	intron (NR_047001, intron 5 of 5)	-4098	NM_006237	5457		NM_006237	ENSG00000152192	POU4F1	ATITHS|BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
37334	chr11	14844651	14844950	+	0	NA	intron (NM_001363569, intron 12 of 15)	L1PA3|LINE|L1	46871	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
14800	chr1	146252851	146253350	+	0	NA	Intergenic	L2b|LINE|L2	-24068	NM_001364006	388677		NM_203458	ENSG00000264343	NOTCH2NLA	N2N|NOTCH2NL	notch 2 N-terminal like A	protein-coding
144725	chr20	36572301	36575650	+	0	NA	promoter-TSS (NM_001199515)	intron (NM_001199514, intron 1 of 2)	378	NM_021809	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
52159	chr12	54284001	54284900	+	0	NA	intron (NR_135167, intron 9 of 10)	intron (NR_135167, intron 9 of 10)	3724	NR_135167	3178		NM_002136	ENSG00000135486	HNRNPA1	ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|MPD3|UP 1|hnRNP A1|hnRNP-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding
121013	chr19	45785371	45786150	+	0	NA	exon (NM_004943, exon 3 of 5)	exon (NM_004943, exon 3 of 5)	-3270	NM_001081560	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
73862	chr15	50259251	50259680	+	0	NA	intron (NM_002112, intron 2 of 11)	intron (NM_002112, intron 2 of 11)	6261	NM_002112	3067		NM_002112	ENSG00000140287	HDC	-	histidine decarboxylase	protein-coding
168566	chr3	148974451	148974550	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	-16908	NM_001184721	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
157377	chr22	44713721	44714130	+	0	NA	intron (NM_181334, intron 1 of 14)	AluY|SINE|Alu	11721	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
80224	chr16	2183751	2184250	+	0	NA	intron (NM_020764, intron 14 of 19)	CpG-9084	12605	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
74612	chr15	60591801	60593500	+	0	NA	promoter-TSS (NM_134262)	promoter-TSS (NM_134262)	-124	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
205145	chr7	7186021	7186280	+	0	NA	intron (NM_020156, intron 1 of 3)	MSTC|LTR|ERVL-MaLR	3606	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
203806	chr7	1292401	1292600	+	0	NA	Intergenic	Intergenic	59628	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
10279	chr1	64828771	64829530	+	0	NA	intron (NM_001366165, intron 11 of 11)	intron (NM_001366165, intron 11 of 11)	84075	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
124252	chr19	57583371	57584730	+	0	NA	promoter-TSS (NM_001321146)	promoter-TSS (NM_001321146)	-95	NM_001321147	284307		NM_001010879	ENSG00000171649	ZIK1	ZNF762	zinc finger protein interacting with K protein 1	protein-coding
61288	chr13	50185771	50186580	+	0	NA	intron (NR_109974, intron 2 of 6)	L1PA2|LINE|L1	14157	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
232750	chr9	136660321	136660800	+	0	NA	promoter-TSS (NR_135132)	promoter-TSS (NR_135132)	-139	NR_135132	101928612		NR_135132	ENSG00000228401	HSPC324	-	uncharacterized LOC101928612	ncRNA
191716	chr6	13684021	13684280	+	0	NA	intron (NM_005493, intron 2 of 13)	L2a|LINE|L2	27685	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
224561	chr9	19456501	19456700	+	0	NA	Intergenic	Intergenic	47591	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
143394	chr20	29299401	29299650	+	0	NA	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	117436	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
97451	chr17	43663301	43663730	+	0	NA	Intergenic	MIRc|SINE|MIR	-1593	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
187720	chr5	143400001	143400980	+	0	NA	exon (NM_001024094, exon 2 of 9)	exon (NM_001024094, exon 2 of 9)	2793	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
18230	chr1	161036851	161036950	+	0	NA	TTS (NM_001113207)	TTS (NM_001113207)	2064	NM_001113207	100131187		NM_001113205	ENSG00000215845	TSTD1	KAT|TST	thiosulfate sulfurtransferase like domain containing 1	protein-coding
227839	chr9	93466701	93467500	+	0	NA	intron (NM_001286723, intron 1 of 9)	L1MC4a|LINE|L1	-13499	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
14461	chr1	144459771	144460300	+	0	NA	intron (NM_001385444, intron 2 of 21)	AluJb|SINE|Alu	1634	NM_001385428	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
128083	chr2	47887471	47887900	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluJb|SINE|Alu	1034	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
87797	chr16	75466001	75466400	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1463	NM_001304998	124491		NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
123732	chr19	55058971	55059330	+	0	NA	intron (NM_001145971, intron 2 of 6).10	intron (NM_001145971, intron 2 of 6).10	3998	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
201967	chr6	152181171	152181330	+	0	NA	intron (NM_033071, intron 127 of 145)	AluSz|SINE|Alu	4128	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
131969	chr2	100104671	100105230	+	0	NA	intron (NM_001025108, intron 1 of 23)	CpG-16347	633	NM_001025108	3899		NM_002285	ENSG00000144218	AFF3	KINS|LAF4|MLLT2-like	ALF transcription elongation factor 3	protein-coding
19404	chr1	174164421	174164680	+	0	NA	intron (NM_001366447, intron 1 of 20)	MER63A|DNA|hAT-Blackjack	5030	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
95877	chr17	38868401	38871100	+	0	NA	promoter-TSS (NM_001271608)	promoter-TSS (NM_001271608)	-109	NM_001271608	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
125008	chr2	9549871	9550030	+	0	NA	intron (NM_001382778, intron 1 of 18)	intron (NM_001382778, intron 1 of 18)	5880	NM_003183	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
47585	chr12	4763671	4763830	+	0	NA	intron (NM_017417, intron 8 of 10)	intron (NM_017417, intron 8 of 10)	43350	NM_017417	26290		NM_017417	ENSG00000130035	GALNT8	GALNAC-T8	polypeptide N-acetylgalactosaminyltransferase 8	protein-coding
167261	chr3	128598071	128598230	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-22064	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
170363	chr3	184601801	184602250	+	0	NA	Intergenic	CpG	40240	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
172065	chr4	1027101	1027450	+	0	NA	TTS (NM_021923)	TTS (NM_021923)	14811	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
115779	chr19	16357401	16357800	+	0	NA	intron (NR_047665, intron 22 of 22)	intron (NR_047665, intron 22 of 22)	32774	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
81174	chr16	4462201	4462550	+	0	NA	intron (NM_001351996, intron 4 of 4)	AluSq|SINE|Alu	12250	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
221289	chr8	122920571	122921200	+	0	NA	intron (NM_001362797, intron 3 of 4)	intron (NM_001362797, intron 3 of 4)	104887	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
164035	chr3	53269821	53270480	+	0	NA	Intergenic	Intergenic	-14036	NM_001258028	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
11129	chr1	86507871	86508250	+	0	NA	Intergenic	Intergenic	-39018	NM_012128	22802		NM_012128	ENSG00000016602	CLCA4	CaCC|CaCC2	chloride channel accessory 4	protein-coding
15121	chr1	148671721	148672080	+	0	NA	intron (NM_001364007, intron 1 of 4)	intron (NM_001364007, intron 1 of 4)	7846	NM_001364007	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
165433	chr3	98531651	98532350	+	0	NA	promoter-TSS (NM_005290)	promoter-TSS (NM_005290)	22	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
40521	chr11	64287771	64288380	+	0	NA	exon (NM_001378081, exon 5 of 8)	exon (NM_001378081, exon 5 of 8)	2227	NM_001378089	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
231062	chr9	129638801	129639100	+	0	NA	intron (NM_177999, intron 3 of 4)	intron (NM_177999, intron 3 of 4)	3201	NM_177999	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
105995	chr18	7822451	7822830	+	0	NA	intron (NM_002845, intron 2 of 30)	intron (NM_002845, intron 2 of 30)	-124235	NM_001378146	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
58537	chr12	132237401	132237880	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-31612	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
190514	chr5	180538651	180538950	+	0	NA	intron (NR_163438, intron 2 of 10)	AluSx3|SINE|Alu	-2854	NM_001370474	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
67875	chr14	74290001	74290750	+	0	NA	exon (NM_001353598, exon 10 of 17)	exon (NM_001353598, exon 10 of 17)	12559	NM_020324	5826		NM_005050	ENSG00000119688	ABCD4	ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L	ATP binding cassette subfamily D member 4	protein-coding
15828	chr1	151329771	151329930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2135	NM_001369623	5298		NM_002651	ENSG00000143393	PI4KB	DFNA87|NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIII|PI4KIIIBETA|PIK4CB	phosphatidylinositol 4-kinase beta	protein-coding
129190	chr2	68190101	68190730	+	0	NA	intron (NM_000945, intron 2 of 5)	AluSq2|SINE|Alu	32527	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
228219	chr9	97889901	97890400	+	0	NA	Intergenic	Intergenic	32031	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
199297	chr6	112010321	112010880	+	0	NA	Intergenic	Intergenic	-43504	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
13384	chr1	113934621	113935380	+	0	NA	intron (NM_001369806, intron 1 of 15)	AluJr4|SINE|Alu	5156	NM_001369807	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
229696	chr9	124673071	124673330	+	0	NA	intron (NR_038975, intron 1 of 1)	AluJo|SINE|Alu	14764	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
64566	chr14	24662701	24663100	+	0	NA	Intergenic	Intergenic	-28710	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
216541	chr8	21577971	21578330	+	0	NA	Intergenic	Intergenic	210725	NM_001165039	2675		NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
133948	chr2	130565951	130566850	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	-4429	NR_033930	646743		NR_033930	ENSG00000290610	PRSS40B	-	serine protease 40B (pseudogene)	pseudo
106040	chr18	8708601	8709130	+	0	NA	intron (NM_001378207, intron 1 of 13)	intron (NM_001378207, intron 1 of 13)	-1244	NR_120598	100287082		NR_120598	ENSG00000265962	GACAT2	MTCL1-AS1|MTCL1AS1	gastric cancer associated transcript 2	ncRNA
23109	chr1	226678551	226679130	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-3772	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
58952	chr13	19780821	19781380	+	0	NA	intron (NM_001354909, intron 1 of 8)	AluJo|SINE|Alu	1845	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
54567	chr12	92340471	92340630	+	0	NA	Intergenic	L3|LINE|CR1	-80981	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
145755	chr20	45229731	45229850	+	0	NA	Intergenic	Intergenic	8417	NM_003008	6407		NM_003008	ENSG00000124157	SEMG2	SGII	semenogelin 2	protein-coding
118963	chr19	38847751	38848560	+	0	NA	intron (NM_001005335, intron 1 of 12).2	AluSx1|SINE|Alu	1831	NM_001533	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
81714	chr16	11255701	11257000	+	0	NA	promoter-TSS (NM_003745)	promoter-TSS (NM_003745)	-168	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
27127	chr10	28179301	28179780	+	0	NA	intron (NR_134518, intron 2 of 16)	intron (NR_134518, intron 2 of 16)	102583	NM_173496	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
68536	chr14	89222151	89222250	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	195033	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
104980	chr17	81993171	81993530	+	0	NA	intron (NR_045351, intron 3 of 14)	AluY|SINE|Alu	15721	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
7960	chr1	37689701	37690910	+	0	NA	exon (NM_001350756, exon 1 of 5)	exon (NM_001350756, exon 1 of 5)	224	NM_001350761	54955		NM_017850	ENSG00000116922	AIRIM	C1orf109	AFG2 interacting ribosome maturation factor	protein-coding
178665	chr4	152497121	152497380	+	0	NA	intron (NM_001349798, intron 2 of 13)	AluSx1|SINE|Alu	-7834	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
183793	chr5	82140851	82140950	+	0	NA	intron (NM_031482, intron 3 of 7)	SVA_F|Retroposon|SVA	137454	NM_001025	6228		NM_001025	ENSG00000186468	RPS23	BTDD|MABAS|MCINS|PAMAS|S23|uS12	ribosomal protein S23	protein-coding
171468	chr3	196430271	196430630	+	0	NA	promoter-TSS (NR_046745)	promoter-TSS (NR_046745)	-935	NR_046745	100874034		NR_046745		UBXN7-AS1	-	UBXN7 antisense RNA 1	ncRNA
149832	chr21	35029871	35030430	+	0	NA	intron (NM_001754, intron 2 of 8)	AluY|SINE|Alu	9276	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
81675	chr16	11095571	11095730	+	0	NA	intron (NM_001243403, intron 18 of 20)	AluSx1|SINE|Alu	151086	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
122784	chr19	50324451	50324550	+	0	NA	intron (NM_001372305, intron 1 of 4)	intron (NM_001372305, intron 1 of 4)	4571	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
141823	chr20	366001	366280	+	0	NA	Intergenic	L1ME4b|LINE|L1	-14489	NM_021158	57761		NM_021158	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
39528	chr11	61092301	61093300	+	0	NA	Intergenic	Intergenic	-1163	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
111262	chr19	3536051	3536150	+	0	NA	3' UTR (NM_001136197, exon 11 of 11)	3' UTR (NM_001136197, exon 11 of 11)	-3057	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
44003	chr11	94623121	94623400	+	0	NA	intron (NR_135096, intron 4 of 6)	intron (NR_135096, intron 4 of 6)	55892	NM_152431	143689		NM_152431	ENSG00000134627	PIWIL4	HIWI2|MIWI2	piwi like RNA-mediated gene silencing 4	protein-coding
103303	chr17	77877121	77877580	+	0	NA	Intergenic	Intergenic	6737	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
205673	chr7	23015401	23015930	+	0	NA	Intergenic	AluJo|SINE|Alu	-1535	NM_001363467	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
211551	chr7	105521221	105522830	+	0	NA	intron (NM_019042, intron 1 of 15)	CpG	246	NM_019042	54517		NM_019042	ENSG00000091127	PUS7	IDDABS	pseudouridine synthase 7	protein-coding
221504	chr8	124579371	124579830	+	0	NA	intron (NM_001363300, intron 6 of 12)	intron (NM_001363300, intron 6 of 12)	40477	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
59900	chr13	30746001	30746400	+	0	NA	intron (NM_001629, intron 2 of 4)	intron (NM_001629, intron 2 of 4)	10657	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
101050	chr17	64814351	64814780	+	0	NA	intron (NR_024386, intron 4 of 10)	intron (NR_024386, intron 4 of 10)	7537	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
2057	chr1	7912001	7912600	+	0	NA	Intergenic	MER101|LTR|ERV1	28539	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
125222	chr2	10328771	10328930	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	-1313	NM_001258357	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
9222	chr1	45686901	45687700	+	0	NA	promoter-TSS (NM_016486)	promoter-TSS (NM_016486)	-767	NM_021639	60313		NM_021639	ENSG00000159592	GPBP1L1	SP192	GC-rich promoter binding protein 1 like 1	protein-coding
163812	chr3	52433271	52433830	+	0	NA	3' UTR (NM_020163, exon 16 of 16)	3' UTR (NM_020163, exon 16 of 16)	11553	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
97250	chr17	42996471	42996630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1723	NM_001349921	6155		NM_000988	ENSG00000131469	RPL27	DBA16|L27|eL27	ribosomal protein L27	protein-coding
183694	chr5	80777671	80778050	+	0	NA	intron (NM_002439, intron 16 of 23)	intron (NM_002439, intron 16 of 23)	-122877	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
3658	chr1	16407351	16407450	+	0	NA	intron (NM_001353349, intron 5 of 10)	intron (NM_001353349, intron 5 of 10)	30024	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
128490	chr2	58239351	58240030	+	0	NA	intron (NR_164659, intron 1 of 11)	L1MC4|LINE|L1	1617	NR_164659	55120		NM_018062	ENSG00000115392	FANCL	FAAP43|PHF9|POG	FA complementation group L	protein-coding
196888	chr6	52263371	52264380	+	0	NA	TTS (NM_002388)	TTS (NM_002388)	-19375	NM_052872	112744		NM_052872	ENSG00000112116	IL17F	CANDF6|IL-17F|IL17A|ML-1|ML1	interleukin 17F	protein-coding
161365	chr3	40466121	40466580	+	0	NA	3' UTR (NM_003973, exon 6 of 6)	3' UTR (NM_003973, exon 6 of 6)	9011	NM_001034996	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
19698	chr1	181046251	181046550	+	0	NA	intron (NM_001310213, intron 3 of 6)	LTR12C|LTR|ERV1	12417	NM_001385162	3140		NM_001531	ENSG00000153029	MR1	HLALS	major histocompatibility complex, class I-related	protein-coding
73202	chr15	41545821	41546350	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1828	NM_015540	26015		NM_015540	ENSG00000103932	RPAP1	-	RNA polymerase II associated protein 1	protein-coding
100832	chr17	64114471	64114830	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	15494	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
60113	chr13	38180701	38180900	+	0	NA	Intergenic	L3|LINE|CR1	-37568	NR_047500	100874188		NR_047500	ENSG00000223685	LINC00571	-	long intergenic non-protein coding RNA 571	ncRNA
173449	chr4	8321071	8321450	+	0	NA	intron (NR_149126, intron 1 of 1)	(CACCAT)n|Simple_repeat|Simple_repeat	1084	NR_149126	105374374		NR_149125	ENSG00000249145	LINC02517	-	long intergenic non-protein coding RNA 2517	ncRNA
14260	chr1	143263621	143264100	+	0	NA	Intergenic	Intergenic	158732	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
18431	chr1	161468851	161468950	+	0	NA	Intergenic	CpG	-36557	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
47482	chr12	3932421	3932680	+	0	NA	Intergenic	MIRc|SINE|MIR	-59102	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
150649	chr21	43412001	43412930	+	0	NA	Intergenic	Intergenic	14666	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
234332	chrX	14496971	14497580	+	0	NA	Intergenic	Intergenic	-32023	NM_001118885	2742		NM_002063	ENSG00000101958	GLRA2	GLR|MRXSP	glycine receptor alpha 2	protein-coding
181120	chr5	37366671	37367100	+	0	NA	intron (NM_153485, intron 1 of 34)	AluY|SINE|Alu	4221	NM_153485	9631		NM_004298	ENSG00000113569	NUP155	ATFB15|N155	nucleoporin 155	protein-coding
205774	chr7	23530201	23530800	+	0	NA	intron (NM_001362760, intron 1 of 8)	intron (NM_001362760, intron 1 of 8)	1481	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
35967	chr11	2842321	2842780	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	19019	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
178801	chr4	153498371	153499130	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	32390	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
40903	chr11	65148771	65148930	+	0	NA	Intergenic	Intergenic	-14331	NM_032431	84447		NM_032431	ENSG00000162298	SYVN1	DER3|HRD1	synoviolin 1	protein-coding
232578	chr9	136385071	136385700	+	0	NA	intron (NM_003086, intron 12 of 22)	L1M4|LINE|L1	-11716	NM_052813	64170		NM_022352	ENSG00000187796	CARD9	CANDF2|IMD103|hCARD9	caspase recruitment domain family member 9	protein-coding
194169	chr6	32107871	32108600	+	0	NA	intron (NM_019105, intron 1 of 43).4	intron (NM_019105, intron 1 of 43).4	1103	NM_019105	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
92053	chr17	7502951	7503750	+	0	NA	intron (NM_000937, intron 17 of 29)	intron (NM_000937, intron 17 of 29)	18984	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
102762	chr17	76281151	76282050	+	0	NA	intron (NM_032134, intron 8 of 18)	intron (NM_032134, intron 8 of 18)	16252	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
128761	chr2	62205021	62205280	+	0	NA	promoter-TSS (NR_049824)	promoter-TSS (NR_049824)	-676	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
122683	chr19	49886501	49887100	+	0	NA	intron (NM_024682, intron 13 of 16)	AluSx|SINE|Alu	-1375	NR_039905	100616314		NR_039905	ENSG00000284394	MIR4750	mir-4750	microRNA 4750	ncRNA
142858	chr20	17621351	17621650	+	0	NA	exon (NM_001365613, exon 16 of 25)	exon (NM_001365613, exon 16 of 25)	51425	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
46072	chr11	122756301	122756830	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	-81935	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
14295	chr1	143789901	143790480	+	0	NA	Intergenic	Intergenic	-2305	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
197116	chr6	57268001	57268280	+	0	NA	Intergenic	Intergenic	-4794	NR_109774	100506188		NR_109774		LINC03001	-	long intergenic non-protein coding RNA 3001	ncRNA
220706	chr8	101883871	101884030	+	0	NA	intron (NM_001040628, intron 4 of 7)	intron (NM_001040628, intron 4 of 7)	-92981	NM_032041	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
81222	chr16	4517521	4518350	+	0	NA	intron (NM_001199055, intron 1 of 5)	intron (NM_001199055, intron 1 of 5)	20494	NM_001199054	29965		NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
5661	chr1	26308651	26309280	+	0	NA	intron (NM_145345, intron 1 of 14)	AluSc|SINE|Alu	-2261	NM_183008	91544		NM_145345	ENSG00000158062	UBXN11	COA-1|PP2243|SOC|SOCI|UBXD5	UBX domain protein 11	protein-coding
218362	chr8	43092171	43092600	+	0	NA	Intergenic	AluY|SINE|Alu	-1121	NM_001277971	84197		NM_032237	ENSG00000185900	POMK	MDDGA12|MDDGC12|SGK196	protein O-mannose kinase	protein-coding
34572	chr10	133233251	133233700	+	0	NA	Intergenic	Intergenic	3258	NM_003577	8433		NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
215125	chr7	155366921	155367580	+	0	NA	intron (NR_103545, intron 1 of 5)	SVA_E|Retroposon|SVA	683	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
32141	chr10	101285521	101286130	+	0	NA	Intergenic	Intergenic	-22275	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
133204	chr2	113138221	113139350	+	0	NA	Intergenic	Intergenic	11187	NM_173842	3557		NM_000577	ENSG00000136689	IL1RN	CRMO2|DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4	interleukin 1 receptor antagonist	protein-coding
221165	chr8	119980201	119980500	+	0	NA	intron (NM_001283012, intron 2 of 6)	MER33|DNA|hAT-Charlie	106628	NM_022783	64798		NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6|hDEPTOR	DEP domain containing MTOR interacting protein	protein-coding
79683	chr16	1256551	1257100	+	0	NA	exon (NM_012217, exon 3 of 5)	exon (NM_012217, exon 3 of 5)	756	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
789	chr1	1538751	1538850	+	0	NA	intron (NM_001114748, intron 2 of 3)	intron (NM_001114748, intron 2 of 3)	1824	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
203652	chr7	985451	985750	+	0	NA	intron (NM_017781, intron 4 of 8)	intron (NM_017781, intron 4 of 8)	2419	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
17837	chr1	159911501	159911700	+	0	NA	Intergenic	Intergenic	-11435	NM_012337	25790		NM_012337	ENSG00000213085	CFAP45	CCDC19|HTX11|NESG1	cilia and flagella associated protein 45	protein-coding
171837	chr4	687171	688030	+	0	NA	intron (NM_032219, intron 1 of 9)	CpG	1551	NM_001378060	84179		NM_032219	ENSG00000169026	SLC49A3	LP2561|MFSD7	solute carrier family 49 member 3	protein-coding
32848	chr10	110058221	110059180	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-50319	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
152645	chr22	21526471	21526830	+	0	NA	Intergenic	AluJr4|SINE|Alu	-9159	NR_003700	375133		NR_003700	ENSG00000293427	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
198422	chr6	106086001	106087030	+	0	NA	5' UTR (NM_001198, exon 1 of 7)	5' UTR (NM_001198, exon 1 of 7)	179	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
197634	chr6	83512101	83512580	+	0	NA	promoter-TSS (NM_153362)	promoter-TSS (NM_153362)	-194	NM_153362	167681		NM_153362	ENSG00000146250	PRSS35	C6orf158|dJ223E3.1	serine protease 35	protein-coding
225947	chr9	41001371	41001530	+	0	NA	intron (NR_156730, intron 2 of 6)	L1M4|LINE|L1	9189	NR_034006	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
76910	chr15	78036471	78036630	+	0	NA	intron (NM_144572, intron 3 of 12)	MLT1D|LTR|ERVL-MaLR	41102	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
27099	chr10	27505851	27505950	+	0	NA	intron (NR_046172, intron 1 of 5)	intron (NR_046172, intron 1 of 5)	1596	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
4408	chr1	21179451	21179550	+	0	NA	Intergenic	Intergenic	-2603	NM_001198802	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
203902	chr7	1496901	1497400	+	0	NA	exon (NM_001080453, exon 11 of 48)	exon (NM_001080453, exon 11 of 48)	7239	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
156132	chr22	40114451	40114550	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluJb|SINE|Alu	-63425	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
213885	chr7	142434921	142435230	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-39452	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
99994	chr17	57782371	57782530	+	0	NA	Intergenic	Intergenic	-37151	NM_001282544	101927581		NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
80172	chr16	2116551	2117130	+	0	NA	exon (NM_000296, exon 7 of 46)	exon (NM_000296, exon 7 of 46)	-10087	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
28428	chr10	48306151	48307650	+	0	NA	intron (NR_136583, intron 1 of 11)	CpG	223	NM_001323320	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
127036	chr2	37158301	37158800	+	0	NA	Intergenic	Intergenic	-1503	NM_002759	5610		NM_002759	ENSG00000055332	EIF2AK2	DYT33|EIF2AK1|LEUDEN|PKR|PPP1R83|PRKR	eukaryotic translation initiation factor 2 alpha kinase 2	protein-coding
33887	chr10	124459951	124460600	+	0	NA	Intergenic	L2c|LINE|L2	-1548	NM_001167880	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
43819	chr11	86676571	86676730	+	0	NA	Intergenic	LTR50|LTR|ERVL	-4014	NR_147830	10873		NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
177287	chr4	109574251	109575300	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	14529	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
44669	chr11	110447601	110448050	+	0	NA	intron (NM_004109, intron 2 of 3)	L2c|LINE|L2	17877	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
36503	chr11	6405551	6406050	+	0	NA	promoter-TSS (NM_001257323)	promoter-TSS (NM_001257323)	-137	NM_001257320	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
171496	chr3	196609201	196610850	+	0	NA	Intergenic	Intergenic	22562	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
117356	chr19	19546701	19547280	+	0	NA	TTS (NM_153221)	TTS (NM_153221)	8725	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
195290	chr6	36527921	36528180	+	0	NA	intron (NM_007271, intron 2 of 13)	AluY|SINE|Alu	19429	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
125197	chr2	10233221	10233480	+	0	NA	Intergenic	(TGTG)n|Simple_repeat|Simple_repeat	-40679	NR_036222	100422929		NR_036222	ENSG00000265418	MIR4261	-	microRNA 4261	ncRNA
17014	chr1	156025771	156026550	+	0	NA	Intergenic	Intergenic	-5209	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
206521	chr7	34723971	34724330	+	0	NA	intron (NR_015356, intron 3 of 4)	intron (NR_015356, intron 3 of 4)	34122	NR_033664	404744		NM_207283	ENSG00000197085	NPSR1-AS1	AAA1	NPSR1 antisense RNA 1	ncRNA
116020	chr19	17158771	17158930	+	0	NA	intron (NM_004145, intron 7 of 39)	intron (NM_004145, intron 7 of 39)	-56507	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
134933	chr2	151409571	151410780	+	0	NA	5' UTR (NM_001177665, exon 1 of 34)	5' UTR (NM_001177665, exon 1 of 34)	273	NM_001177665	55183		NM_018151	ENSG00000080345	RIF1	-	replication timing regulatory factor 1	protein-coding
233007	chr9	137010351	137010950	+	0	NA	exon (NM_001606, exon 40 of 49)	exon (NM_001606, exon 40 of 49)	-14082	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
103009	chr17	76841901	76842400	+	0	NA	Intergenic	Intergenic	-14016	NR_135283	283994		NR_135283	ENSG00000267535	LINC00868	C17orf52	long intergenic non-protein coding RNA 868	ncRNA
16167	chr1	153777251	153777350	+	0	NA	intron (NR_145826, intron 3 of 8).2	L2c|LINE|L2	1893	NM_001317929	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
55972	chr12	110102221	110102530	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-21982	NM_031473	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
153593	chr22	27008501	27008700	+	0	NA	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	51801	NM_001318329	284898		NM_001318329		LOC284898	-	uncharacterized LOC284898	ncRNA
113513	chr19	10108351	10109180	+	0	NA	promoter-TSS (NR_003688)	promoter-TSS (NR_003688)	-984	NR_003688	100113382		NR_003688	ENSG00000238531	SNORD105B	-	small nucleolar RNA, C/D box 105B	snoRNA
4098	chr1	19215671	19215830	+	0	NA	TTS (NM_001271427)	TTS (NM_001271427)	5364	NR_135115	101927895		NR_135114	ENSG00000230424	EMC1-AS1	-	EMC1 antisense RNA 1	ncRNA
197733	chr6	87151741	87152930	+	0	NA	Intergenic	CpG	-3230	NM_015021	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
51309	chr12	51291851	51292150	+	0	NA	exon (NM_001364781, exon 8 of 11)	exon (NM_001364781, exon 8 of 11)	-21585	NM_001031628	57228		NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
55301	chr12	103503671	103504500	+	0	NA	Intergenic	Intergenic	8045	NR_135004	105369945		NR_135004		LOC105369945	-	uncharacterized LOC105369945	ncRNA
30499	chr10	79310701	79311100	+	0	NA	intron (NM_020338, intron 23 of 24)	(CTCCT)n|Simple_repeat|Simple_repeat	-36569	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
194237	chr6	32438471	32438630	+	0	NA	Intergenic	Intergenic	-1337	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
151573	chr21	46616171	46616530	+	0	NA	Intergenic	L1PA13|LINE|L1	-11268	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
14486	chr1	144536701	144536900	+	0	NA	Intergenic	Intergenic	15143	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
164314	chr3	57691801	57693550	+	0	NA	promoter-TSS (NR_135550)	promoter-TSS (NR_135550)	402	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
124130	chr19	55678221	55678680	+	0	NA	intron (NM_001130071, intron 2 of 10)	L2c|LINE|L2	1825	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
144968	chr20	37191921	37192730	+	0	NA	intron (NM_001324306, intron 2 of 15)	L2b|LINE|L2	-12777	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
7724	chr1	36110851	36111480	+	0	NA	intron (NM_001294347, intron 2 of 3)	intron (NM_001294347, intron 2 of 3)	14057	NM_005202	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
51107	chr12	50055671	50056430	+	0	NA	Intergenic	Intergenic	-1546	NM_001095	41		NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding
224636	chr9	20606671	20607030	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	15088	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
159548	chr3	14645671	14646030	+	0	NA	Intergenic	Intergenic	-5896	NR_135523	51244		NM_016474	ENSG00000154781	CCDC174	C3orf19|HSPC212|IHPM|IHPMR|ctr1	coiled-coil domain containing 174	protein-coding
83985	chr16	29381151	29384200	+	0	NA	exon (NM_001310137, exon 8 of 8)	exon (NM_001310137, exon 8 of 8)	21870	NM_001310137	728888		NM_001310137	ENSG00000254206	NPIPB11	NPIP	nuclear pore complex interacting protein family member B11	protein-coding
31824	chr10	99436021	99436430	+	0	NA	Intergenic	Intergenic	-5601	NM_002079	2805		NM_002079	ENSG00000120053	GOT1	AST|AST1|ASTQTL1|GIG18|SGOT|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1	protein-coding
16369	chr1	154349471	154349630	+	0	NA	3' UTR (NM_001370596, exon 28 of 28)	3' UTR (NM_001370596, exon 28 of 28)	20752	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
150676	chr21	43503401	43503600	+	0	NA	Intergenic	Intergenic	-23966	NR_136540	102724354		NR_136540	ENSG00000280191	LOC102724354	LINC01669	long intergenic non-protein coding RNA 1669	ncRNA
160883	chr3	33713821	33714230	+	0	NA	intron (NM_001375705, intron 1 of 36)	MIR|SINE|MIR	4229	NM_001365628	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
193757	chr6	31341021	31341300	+	0	NA	Intergenic	L1M2|LINE|L1	14156	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
96629	chr17	40582171	40583200	+	0	NA	Intergenic	Intergenic	-17213	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
99068	chr17	48946001	48946200	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1258	NM_001317192	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
186278	chr5	134541371	134542280	+	0	NA	intron (NM_001289985, intron 3 of 11)	intron (NM_001289985, intron 3 of 11)	15717	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
233834	chrX	1495071	1495600	+	0	NA	intron (NM_178129, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	-41573	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
173476	chr4	9001251	9001350	+	0	NA	Intergenic	CpG	-129461	NM_001306142	3166		NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
28646	chr10	59879151	59879850	+	0	NA	intron (NM_005436, intron 1 of 8)	MER90a|LTR|ERV1	27056	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
169095	chr3	154321551	154322350	+	0	NA	intron (NM_020865, intron 1 of 24)	intron (NM_020865, intron 1 of 24)	2537	NM_020865	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
192533	chr6	25070401	25071190	+	0	NA	Intergenic	Intergenic	-28507	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
93932	chr17	21303921	21304180	+	0	NA	intron (NM_145109, intron 7 of 11)	intron (NM_145109, intron 7 of 11)	16014	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
122298	chr19	49104521	49104950	+	0	NA	exon (NM_001301069, exon 8 of 10)	exon (NM_001301069, exon 8 of 10)	-9635	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
57384	chr12	121810101	121810730	+	0	NA	exon (NM_001353345, exon 6 of 17)	exon (NM_001353345, exon 6 of 17)	6406	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
168631	chr3	149771671	149772130	+	0	NA	intron (NM_001315505, intron 3 of 5)	L2a|LINE|L2	-19401	NR_135149	51122		NM_016094	ENSG00000114744	COMMD2	HSPC042	COMM domain containing 2	protein-coding
174783	chr4	47926621	47927330	+	0	NA	intron (NR_125879, intron 1 of 2)	LTR41B|LTR|ERVL	-12308	NM_001278623	152518		NM_152995	ENSG00000170448	NFXL1	CDZFP|HOZFP|OZFP|URCC5	nuclear transcription factor, X-box binding like 1	protein-coding
48519	chr12	9957751	9958250	+	0	NA	intron (NM_001207010, intron 1 of 6)	LOR1-int|LTR|ERV1	-4663	NR_135047	400002		NR_135047	ENSG00000231560	CLEC12A-AS1	-	CLEC12A antisense RNA 1	ncRNA
142677	chr20	6026001	6026380	+	0	NA	intron (NR_136617, intron 3 of 5)	Tigger1|DNA|TcMar-Tigger	18941	NM_001127458	54675		NM_019095	ENSG00000088766	CRLS1	C20orf155|CLS|CLS1|COSPD57|GCD10|dJ967N21.6	cardiolipin synthase 1	protein-coding
38587	chr11	46239091	46239800	+	0	NA	Intergenic	Intergenic	-38217	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
4934	chr1	23949121	23949400	+	0	NA	Intergenic	Intergenic	-10568	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
44178	chr11	96246571	96247530	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-94388	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
62198	chr13	98142551	98143830	+	0	NA	promoter-TSS (NM_005766)	promoter-TSS (NM_005766)	96	NM_001001715	10160		NM_005766	ENSG00000152767	FARP1	CDEP|FARP1-IT1|GLCC1|PLEKHC2|PPP1R75	FERM, ARH/RhoGEF and pleckstrin domain protein 1	protein-coding
203535	chr7	864321	864580	+	0	NA	intron (NM_001367704, intron 16 of 19)	AluSp|SINE|Alu	-12104	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
64581	chr14	24700471	24700830	+	0	NA	Intergenic	MIRb|SINE|MIR	-66460	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
41846	chr11	67125671	67125900	+	0	NA	intron (NM_012308, intron 2 of 20)	AluSx|SINE|Alu	6522	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
98642	chr17	47816321	47816980	+	0	NA	exon (NM_145798, exon 10 of 23)	exon (NM_145798, exon 10 of 23)	5144	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
174684	chr4	41957671	41958050	+	0	NA	3' UTR (NM_018126, exon 7 of 7)	3' UTR (NM_018126, exon 7 of 7)	22431	NM_018126	55161		NM_018126	ENSG00000109133	TMEM33	1600019D15Rik|Pom33|SHINC-3|SHINC3	transmembrane protein 33	protein-coding
71547	chr14	106234351	106235130	+	0	NA	Intergenic	Intergenic	-52934	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
226433	chr9	71446551	71447080	+	0	NA	exon (NM_001366143, exon 1 of 26)	exon (NM_001366143, exon 1 of 26)	156	NM_001366142	80036		NM_020952	ENSG00000083067	TRPM3	CTRCT50|GON-2|LTRPC3|MLSN2|NEDFSS	transient receptor potential cation channel subfamily M member 3	protein-coding
62891	chr13	110726321	110727030	+	0	NA	Intergenic	Intergenic	11238	NM_001267728	3621		NM_005537	ENSG00000153487	ING1	p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a	inhibitor of growth family member 1	protein-coding
44871	chr11	114208101	114208880	+	0	NA	intron (NM_001354751, intron 4 of 6)	MIRc|SINE|MIR	-49316	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
62405	chr13	99287071	99287630	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	20049	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
209171	chr7	75360801	75361400	+	0	NA	non-coding (NR_040583, exon 2 of 10)	non-coding (NR_040583, exon 2 of 10)	1900	NR_040583	54441		NM_018991	ENSG00000290951	STAG3L1	STAG3L1P|STAG3L2|STAG3L3	STAG3 cohesin complex component like 1 (pseudogene)	pseudo
210048	chr7	94907821	94908080	+	0	NA	intron (NM_017650, intron 1 of 15)	CpG	313	NM_017650	55607		NM_017650	ENSG00000158528	PPP1R9A	NRB1|NRBI|Neurabin-I	protein phosphatase 1 regulatory subunit 9A	protein-coding
171004	chr3	194696471	194696830	+	0	NA	Intergenic	Intergenic	10767	NM_153690	131583		NM_153690	ENSG00000185112	FAM43A	-	family with sequence similarity 43 member A	protein-coding
171331	chr3	195992071	195992530	+	0	NA	Intergenic	L1ME1|LINE|L1	-2021	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
23936	chr1	235102401	235103380	+	0	NA	Intergenic	AluSx1|SINE|Alu	25047	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
61433	chr13	51829251	51829550	+	0	NA	intron (NM_001351003, intron 2 of 4)	MER45B|DNA|hAT-Tip100	15777	NM_001351003	283521		NM_178515	ENSG00000281106	TMEM272	LINC00282|NCRNA00282	transmembrane protein 272	protein-coding
201429	chr6	147201821	147203100	+	0	NA	intron (NR_034115, intron 1 of 10)	intron (NR_034115, intron 1 of 10)	-1898	NM_001127715	134957		NM_139244	ENSG00000164506	STXBP5	LGL3|LLGL3|Nbla04300	syntaxin binding protein 5	protein-coding
131427	chr2	96289151	96289450	+	0	NA	exon (NM_014014, exon 22 of 45)	exon (NM_014014, exon 22 of 45)	16246	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
92786	chr17	15852921	15853180	+	0	NA	Intergenic	L1MEg|LINE|L1	-35308	NR_110839	101928567		NR_110839		LINC02087	-	long intergenic non-protein coding RNA 2087	ncRNA
159989	chr3	18346071	18346430	+	0	NA	3' UTR (NM_001322872, exon 12 of 12)	3' UTR (NM_001322872, exon 12 of 12)	79089	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
229818	chr9	125650151	125650500	+	0	NA	intron (NM_024117, intron 4 of 10)	L2b|LINE|L2	56883	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
43443	chr11	77789371	77790000	+	0	NA	intron (NM_016578, intron 1 of 15)	L1M2|LINE|L1	31149	NM_016578	51773		NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
22991	chr1	226105351	226105450	+	0	NA	Intergenic	AluSz|SINE|Alu	21825	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
78465	chr15	92888171	92888630	+	0	NA	intron (NR_037600, intron 3 of 4)	intron (NR_037600, intron 3 of 4)	5104	NR_037602	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
154641	chr22	36327751	36328300	+	0	NA	intron (NM_002473, intron 3 of 40)	MIRb|SINE|MIR	-41118	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
58617	chr12	132493371	132493530	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	3299	NM_001382740	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
187645	chr5	143023351	143024380	+	0	NA	intron (NR_146198, intron 12 of 22)	(TCCTTTC)n|Simple_repeat|Simple_repeat	-154955	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
85890	chr16	57058351	57059050	+	0	NA	intron (NM_001384955, intron 28 of 47)	intron (NM_001384955, intron 28 of 47)	-33883	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
52219	chr12	54384451	54385130	+	0	NA	promoter-TSS (NM_015481)	promoter-TSS (NM_015481)	-57	NM_015481	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
62356	chr13	99206321	99206780	+	0	NA	intron (NR_026644, intron 1 of 8)	intron (NR_026644, intron 1 of 8)	5696	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
97770	chr17	44522971	44523530	+	0	NA	Intergenic	Intergenic	-19844	NM_001304939	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
63836	chr14	21504721	21505580	+	0	NA	intron (NM_019852, intron 1 of 10)	AluJb|SINE|Alu	6190	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
232986	chr9	136983951	136984250	+	0	NA	intron (NM_207510, intron 1 of 2)	(GT)n|Simple_repeat|Simple_repeat	1107	NM_207510	401562		NM_207510	ENSG00000214402	LCNL1	-	lipocalin like 1	protein-coding
190161	chr5	178130551	178131650	+	0	NA	promoter-TSS (NM_022762)	promoter-TSS (NM_022762)	86	NM_022762	64777		NM_022762	ENSG00000145916	RMND5B	GID2|GID2B	required for meiotic nuclear division 5 homolog B	protein-coding
198600	chr6	107716601	107717880	+	0	NA	intron (NM_001286409, intron 2 of 3)	AluY|SINE|Alu	14910	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
216459	chr8	19625421	19625680	+	0	NA	intron (NM_001354476, intron 1 of 8)	MER5A|DNA|hAT-Charlie	-23005	NM_001354499	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
207251	chr7	43838471	43839580	+	0	NA	Intergenic	Intergenic	30492	NM_032014	64951		NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
168709	chr3	150702701	150704180	+	0	NA	promoter-TSS (NR_121675)	promoter-TSS (NR_121675)	-124	NR_121675	101928085		NR_121674	ENSG00000240137	ERICH6-AS1	-	ERICH6 antisense RNA 1	ncRNA
87549	chr16	71927221	71927480	+	0	NA	intron (NM_014761, intron 9 of 9)	AluSz|SINE|Alu	31819	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
78490	chr15	92919621	92920030	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	15426	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
237778	chrX	129776571	129777630	+	0	NA	Intergenic	Intergenic	-2849	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
110582	chr19	2157451	2158150	+	0	NA	Intergenic	L2b|LINE|L2	-6133	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
89956	chr16	89766171	89766330	+	0	NA	intron (NM_001286167, intron 27 of 42)	AluSg|SINE|Alu	44713	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
107562	chr18	48813551	48814630	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	128717	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
86978	chr16	68200051	68200350	+	0	NA	intron (NM_173165, intron 9 of 9)	intron (NM_173165, intron 9 of 9)	33299	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
181674	chr5	50439001	50439430	+	0	NA	intron (NM_198449, intron 1 of 8)	intron (NM_198449, intron 1 of 8)	2073	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
144640	chr20	35953071	35955680	+	0	NA	5' UTR (NM_001385710, exon 3 of 3)	5' UTR (NM_001385710, exon 3 of 3)	127	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
29487	chr10	70577971	70578830	+	0	NA	Intergenic	Intergenic	24341	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
85865	chr16	57033901	57035450	+	0	NA	intron (NM_001384955, intron 13 of 47)	intron (NM_001384955, intron 13 of 47)	45118	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
105726	chr18	2718801	2719000	+	0	NA	intron (NM_015295, intron 19 of 47)	HAL1|LINE|L1	63174	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
130753	chr2	86811821	86812800	+	0	NA	Intergenic	Intergenic	-3914	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
198950	chr6	110814701	110816580	+	0	NA	promoter-TSS (NM_001300963)	promoter-TSS (NM_001300963)	-8	NM_001300963	23097		NM_015076	ENSG00000155111	CDK19	CDC2L6|CDK11|DEE87|EIEE87|bA346C16.3	cyclin dependent kinase 19	protein-coding
178307	chr4	145191501	145191700	+	0	NA	Intergenic	AluSz|SINE|Alu	-11011	NM_001366058	54726		NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
194010	chr6	31797051	31797150	+	0	NA	TTS (NM_021177).3	TTS (NM_021177).3	-1348	NM_006295	7407		NM_006295	ENSG00000204394	VARS1	G7A|NDMSCA|VARS|VARS2	valyl-tRNA synthetase 1	protein-coding
24659	chr1	247007621	247008180	+	0	NA	intron (NR_037894, intron 1 of 6)	CpG	157	NR_037892	57116		NM_020394	ENSG00000197472	ZNF695	SBZF3	zinc finger protein 695	protein-coding
130904	chr2	87459301	87460050	+	0	NA	intron (NR_024206, intron 1 of 1)	intron (NR_024206, intron 1 of 1)	4248	NR_024206	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
22782	chr1	224423401	224424030	+	0	NA	intron (NM_001115113, intron 4 of 13)	AluJr4|SINE|Alu	-10925	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
144996	chr20	37520301	37520880	+	0	NA	promoter-TSS (NM_005386)	promoter-TSS (NM_005386)	-1	NM_001317074	10904		NM_006698	ENSG00000166619	BLCAP	BC10	BLCAP apoptosis inducing factor	protein-coding
227928	chr9	94313721	94314330	+	0	NA	Intergenic	AluSz|SINE|Alu	14619	NM_017561	54754		NM_017561	ENSG00000130950	NUTM2F	FAM22F|NUTMF	NUT family member 2F	protein-coding
948	chr1	1742721	1743300	+	0	NA	intron (NM_182838, intron 1 of 5)	AluSz|SINE|Alu	2989	NM_182838	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
161957	chr3	46261771	46262650	+	0	NA	intron (NM_178329, intron 1 of 1)	LTR81B|LTR|Gypsy	19750	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
238443	chrX	151448551	151448850	+	0	NA	Intergenic	L1PB4|LINE|L1	51515	NM_001017980	203547		NM_001017980	ENSG00000160131	VMA21	MEAX|XMEA	vacuolar ATPase assembly factor VMA21	protein-coding
101444	chr17	67438721	67438980	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-32639	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
224114	chr9	4644301	4645280	+	0	NA	intron (NR_148446, intron 2 of 8)	intron (NR_148446, intron 2 of 8)	17433	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
151240	chr21	45285971	45286130	+	0	NA	intron (NM_133635, intron 1 of 8)	intron (NM_133635, intron 1 of 8)	1845	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
141241	chr2	239647171	239647330	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-115610	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
1816	chr1	6237851	6238200	+	0	NA	intron (NR_103534, intron 4 of 4)	intron (NR_103534, intron 4 of 4)	1785	NR_103534	148645		NM_153709		ICMT-DT	C1orf211|LINC00337|NCRNA00337	ICMT divergent transcript	ncRNA
27329	chr10	30531021	30531380	+	0	NA	Intergenic	Intergenic	96554	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
130654	chr2	86191751	86192480	+	0	NA	TTS (NR_039939)	TTS (NR_039939)	993	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
181773	chr5	50743351	50743730	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	76126	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
161607	chr3	43196771	43197130	+	0	NA	Intergenic	Intergenic	-89562	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
206870	chr7	37635571	37636130	+	0	NA	Intergenic	L1MD1|LINE|L1	-47916	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
208556	chr7	70872151	70872250	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-259944	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
23307	chr1	228075121	228076180	+	0	NA	non-coding (NR_158166, exon 1 of 1)	non-coding (NR_158166, exon 1 of 1)	900	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
200202	chr6	131199501	131200880	+	0	NA	intron (NR_164833, intron 8 of 9)	intron (NR_164833, intron 8 of 9)	-50214	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
86741	chr16	67641951	67642250	+	0	NA	Intergenic	Intergenic	-3044	NM_001317026	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
189748	chr5	176609471	176610530	+	0	NA	5' UTR (NM_052899, exon 1 of 2)	5' UTR (NM_052899, exon 1 of 2)	156	NM_052899	114787		NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
156964	chr22	42374801	42375000	+	0	NA	Intergenic	Intergenic	-5692	NR_120595	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
133810	chr2	127810251	127812050	+	0	NA	promoter-TSS (NM_001006622)	promoter-TSS (NM_001006622)	21	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
206345	chr7	30344721	30344980	+	0	NA	intron (NM_147128, intron 2 of 4)	L1M7|LINE|L1	-25200	NR_002186	222161		NM_152747		DKFZP586I1420	-	uncharacterized protein DKFZp586I1420	pseudo
107475	chr18	47100201	47100480	+	0	NA	exon (NM_001367621, exon 15 of 16)	exon (NM_001367621, exon 15 of 16)	50160	NM_001318765	84064		NM_032124	ENSG00000167220	HDHD2	3110052N05Rik|HEL-S-301	haloacid dehalogenase like hydrolase domain containing 2	protein-coding
164087	chr3	56468051	56468530	+	0	NA	non-coding (NR_132749, exon 1 of 18)	non-coding (NR_132749, exon 1 of 18)	177	NR_132749	26059		NM_015576	ENSG00000187672	ERC2	CAST|CAST1|ELKSL|SPBC110|Spc110	ELKS/RAB6-interacting/CAST family member 2	protein-coding
49122	chr12	14811001	14811200	+	0	NA	intron (NM_001013698, intron 1 of 1)	intron (NM_001013698, intron 1 of 1)	3082	NM_001013698	440087		NM_001013698	ENSG00000179256	SMCO3	C12orf69	single-pass membrane protein with coiled-coil domains 3	protein-coding
127584	chr2	42776021	42776480	+	0	NA	intron (NM_012205, intron 4 of 9)	AluSp|SINE|Alu	-11989	NM_148962	165140		NM_148962	ENSG00000162881	OXER1	GPCR|GPR170|TG1019	oxoeicosanoid receptor 1	protein-coding
10601	chr1	67500421	67500790	+	0	NA	Intergenic	Intergenic	-70203	NM_001018069	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
122266	chr19	49055951	49057300	+	0	NA	intron (NM_033142, intron 2 of 4)	CpG	1124	NM_033142	94027		NM_033142	ENSG00000196337	CGB7	CG-beta-a|CGB6	chorionic gonadotropin subunit beta 7	protein-coding
74532	chr15	60486571	60486730	+	0	NA	intron (NR_120341, intron 1 of 4)	intron (NR_120341, intron 1 of 4)	7472	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
187971	chr5	149442401	149443080	+	0	NA	Intergenic	Intergenic	12094	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
131902	chr2	98767951	98769050	+	0	NA	intron (NR_126337, intron 3 of 3)	intron (NR_126337, intron 3 of 3)	3398	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
220935	chr8	108442951	108444300	+	0	NA	promoter-TSS (NM_001329493)	promoter-TSS (NM_001329493)	1	NM_014673	9694		NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
71289	chr14	105286971	105287130	+	0	NA	intron (NM_001242787, intron 1 of 17)	intron (NM_001242787, intron 1 of 17)	-13724	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
212953	chr7	130947501	130948930	+	0	NA	intron (NR_109853, intron 4 of 5)	L1MB3|LINE|L1	34751	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
142699	chr20	8151321	8151750	+	0	NA	intron (NM_015192, intron 2 of 31)	intron (NM_015192, intron 2 of 31)	19269	NM_182734	23236		NM_015192	ENSG00000182621	PLCB1	DEE12|EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B	phospholipase C beta 1	protein-coding
75281	chr15	65067521	65068050	+	0	NA	exon (NM_001307930, exon 1 of 4)	exon (NM_001307930, exon 1 of 4)	206	NM_001307930	51285		NM_016563	ENSG00000103710	RASL12	RIS	RAS like family 12	protein-coding
91186	chr17	3885371	3885730	+	0	NA	exon (NM_172206, exon 2 of 16)	exon (NM_172206, exon 2 of 16)	5193	NM_172206	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
41427	chr11	66061151	66061650	+	0	NA	intron (NM_006842, intron 14 of 21)	MIR3|SINE|MIR	8256	NR_145738	109616986		NR_145738		SNORD13F	-	small nucleolar RNA, C/D box 13F	snoRNA
83059	chr16	22334971	22335930	+	0	NA	TTS (NM_001258034).2	TTS (NM_001258034).2	38041	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
92582	chr17	9236171	9236330	+	0	NA	intron (NM_004822, intron 6 of 6)	intron (NM_004822, intron 6 of 6)	-57132	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
173839	chr4	21041871	21042030	+	0	NA	intron (NM_147182, intron 2 of 8)	MIRb|SINE|MIR	-57941	NM_001363504	80333		NM_025221	ENSG00000185774	KCNIP4	CALP|KCHIP4	potassium voltage-gated channel interacting protein 4	protein-coding
100442	chr17	61252271	61252430	+	0	NA	intron (NM_001353144, intron 24 of 25)	intron (NM_001353144, intron 24 of 25)	115354	NR_136397	101927855		NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
154975	chr22	37285971	37286130	+	0	NA	intron (NM_013385, intron 1 of 12)	intron (NM_013385, intron 1 of 12)	3542	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
81503	chr16	8955821	8956080	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	430	NM_001321858	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
131652	chr2	97649151	97649450	+	0	NA	TTS (NM_001862)	TTS (NM_001862)	3238	NM_001862	1329		NM_001862	ENSG00000135940	COX5B	COXVB	cytochrome c oxidase subunit 5B	protein-coding
104719	chr17	81559071	81559630	+	0	NA	exon (NM_017921, exon 17 of 17)	exon (NM_017921, exon 17 of 17)	-6997	NM_025161	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
92318	chr17	8133201	8133580	+	0	NA	Intergenic	Intergenic	-9284	NM_001165967	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
234717	chrX	21479751	21480100	+	0	NA	intron (NM_001168647, intron 5 of 20)	LTR41B|LTR|ERVL	105507	NM_001330773	22866		NM_014927	ENSG00000149970	CNKSR2	CNK2|KSR2|MAGUIN|MRXSHG	connector enhancer of kinase suppressor of Ras 2	protein-coding
160259	chr3	25650001	25650200	+	0	NA	intron (NM_001330700, intron 1 of 35)	HSMAR2|DNA|TcMar-Mariner	14272	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
192112	chr6	16729001	16730000	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	30684	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
139191	chr2	219242821	219243730	+	0	NA	exon (NM_024506, exon 3 of 17)	exon (NM_024506, exon 3 of 17)	356	NM_001286427	79411		NM_024506	ENSG00000163521	GLB1L	-	galactosidase beta 1 like	protein-coding
71938	chr15	23040851	23040950	+	0	NA	Intergenic	Intergenic	-1227	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
110786	chr19	2435401	2435700	+	0	NA	promoter-TSS (NR_106958)	promoter-TSS (NR_106958)	-550	NR_106958	102466806		NR_106958	ENSG00000283728	MIR7108	hsa-mir-7108	microRNA 7108	ncRNA
107766	chr18	50877821	50879500	+	0	NA	promoter-TSS (NM_002396)	promoter-TSS (NM_002396)	-458	NM_002396	4200		NM_002396	ENSG00000082212	ME2	ODS1	malic enzyme 2	protein-coding
38249	chr11	36506421	36506680	+	0	NA	intron (NM_145803, intron 1 of 7)	intron (NM_145803, intron 1 of 7)	3722	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
212603	chr7	129144151	129145680	+	0	NA	5' UTR (NM_178562, exon 1 of 8)	5' UTR (NM_178562, exon 1 of 8)	208	NM_178562	340348		NM_178562	ENSG00000158457	TSPAN33	PEN|PEN.|TSPAN-33	tetraspanin 33	protein-coding
201204	chr6	143510771	143512150	+	0	NA	exon (NM_032020, exon 1 of 7)	exon (NM_032020, exon 1 of 7)	260	NM_032020	2519		NM_032020	ENSG00000001036	FUCA2	dJ20N2.5	alpha-L-fucosidase 2	protein-coding
55470	chr12	104685671	104686600	+	0	NA	intron (NM_018413, intron 2 of 2)	AluJr4|SINE|Alu	94502	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
94892	chr17	31547471	31548080	+	0	NA	Intergenic	AluJr4|SINE|Alu	-12221	NR_029710	406968		NR_029710	ENSG00000207614	MIR193A	MIRN193|MIRN193A|mir-193a	microRNA 193a	ncRNA
9025	chr1	44753701	44753900	+	0	NA	exon (NM_001297656, exon 6 of 20)	exon (NM_001297656, exon 6 of 20)	7406	NM_001297656	11004		NM_006845	ENSG00000142945	KIF2C	CT139|KNSL6|MCAK	kinesin family member 2C	protein-coding
105522	chr17	83115451	83116200	+	0	NA	Intergenic	Intergenic	34679	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
146035	chr20	47320051	47320350	+	0	NA	non-coding (NR_024594, exon 1 of 1)	non-coding (NR_024594, exon 1 of 1)	1698	NR_024594	100131496		NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
135288	chr2	160148951	160149050	+	0	NA	intron (NM_001282389, intron 7 of 14)	L1PA6|LINE|L1	51272	NM_001282390	3694		NM_000888	ENSG00000115221	ITGB6	AI1H	integrin subunit beta 6	protein-coding
32647	chr10	103752801	103753000	+	0	NA	intron (NR_038940, intron 2 of 2)	intron (NR_038940, intron 2 of 2)	6121	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
66853	chr14	64975651	64975750	+	0	NA	intron (NM_001202559, intron 3 of 13)	AluSx1|SINE|Alu	-3364	NM_001330182	376267		NM_198686	ENSG00000139998	RAB15	-	RAB15, member RAS oncogene family	protein-coding
94923	chr17	31936421	31937900	+	0	NA	5' UTR (NM_001321207, exon 1 of 15)	5' UTR (NM_001321207, exon 1 of 15)	153	NM_015355	23512		NM_015355	ENSG00000178691	SUZ12	CHET9|IMMAS|JJAZ1	SUZ12 polycomb repressive complex 2 subunit	protein-coding
138203	chr2	202675271	202675630	+	0	NA	intron (NM_173511, intron 1 of 7)	AluJb|SINE|Alu	40481	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
17638	chr1	157134601	157135200	+	0	NA	intron (NM_005240, intron 3 of 3)	intron (NM_005240, intron 3 of 3)	3495	NM_001145312	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
82535	chr16	18367001	18367430	+	0	NA	intron (NR_146331, intron 32 of 37)	intron (NR_146331, intron 32 of 37)	12195	NR_107060	102465908		NR_107060	ENSG00000277698	MIR6770-2	hsa-mir-6770-2	microRNA 6770-2	ncRNA
118514	chr19	35977121	35977680	+	0	NA	Intergenic	Intergenic	-17788	NM_001042631	644096		NM_001042631	ENSG00000205138	SDHAF1	LYRM8|MC2DN2	succinate dehydrogenase complex assembly factor 1	protein-coding
158594	chr3	4806421	4806680	+	0	NA	intron (NM_002222, intron 51 of 57)	intron (NM_002222, intron 51 of 57)	-54960	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
27570	chr10	32362601	32363200	+	0	NA	intron (NR_104163, intron 1 of 1)	LTR36|LTR|ERV1	15536	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
231009	chr9	129538121	129538200	+	0	NA	Intergenic	AluSp|SINE|Alu	49500	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
22586	chr1	223090071	223090300	+	0	NA	Intergenic	Intergenic	53063	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
101007	chr17	64707301	64707730	+	0	NA	Intergenic	Intergenic	-45208	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
225968	chr9	41127221	41127950	+	0	NA	exon (NM_001085476, exon 1 of 1)	exon (NM_001085476, exon 1 of 1)	860	NM_001085476	653404		NM_001085476	ENSG00000273514	FOXD4L6	-	forkhead box D4 like 6	protein-coding
33688	chr10	120456721	120456980	+	0	NA	promoter-TSS (NM_001030059)	promoter-TSS (NM_001030059)	-104	NM_001318169	196051		NM_001030059	ENSG00000203805	PLPP4	DPPL2|PPAPDC1|PPAPDC1A	phospholipid phosphatase 4	protein-coding
21182	chr1	203798121	203799000	+	0	NA	exon (NM_001174108, exon 1 of 1)	exon (NM_001174108, exon 1 of 1)	1037	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
149442	chr21	31505921	31506330	+	0	NA	intron (NM_001353688, intron 1 of 29)	MIR3|SINE|MIR	52962	NM_001353689	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
16661	chr1	155176591	155177600	+	0	NA	intron (NM_001256599, intron 4 of 9)	intron (NM_001256599, intron 4 of 9)	2341	NM_001256601	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
234689	chrX	20378321	20378800	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-111651	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
145636	chr20	44867371	44867930	+	0	NA	Intergenic	AluSz|SINE|Alu	-18055	NM_139323	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
104687	chr17	81516551	81516850	+	0	NA	Intergenic	Intergenic	-3901	NR_037688	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
211928	chr7	112459621	112460750	+	0	NA	intron (NM_001550, intron 5 of 11)	intron (NM_001550, intron 5 of 11)	8127	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
96321	chr17	40012101	40012400	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3190	NR_168490	1440		NM_000759	ENSG00000108342	CSF3	C17orf33|CSF3OS|GCSF	colony stimulating factor 3	protein-coding
25015	chr10	3470851	3470950	+	0	NA	intron (NR_155743, intron 3 of 4)	(GA)n|Simple_repeat|Simple_repeat	31938	NR_155743	101927880		NR_155743	ENSG00000233321	LINC02669	-	long intergenic non-protein coding RNA 2669	ncRNA
74736	chr15	63200551	63200930	+	0	NA	intron (NM_016530, intron 1 of 7)	MIRc|SINE|MIR	11134	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
68474	chr14	87961471	87961630	+	0	NA	intron (NM_001201401, intron 9 of 15)	intron (NM_001201401, intron 9 of 15)	31632	NM_000153	2581		NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
36222	chr11	3580951	3581880	+	0	NA	Intergenic	Intergenic	-9428	NR_126335	101927708		NR_126335	ENSG00000255367	LOC101927708	-	uncharacterized LOC101927708	ncRNA
111584	chr19	4079851	4080350	+	0	NA	Intergenic	Intergenic	-13201	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
222751	chr8	141414401	141414600	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-6888	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
208752	chr7	73526951	73529200	+	0	NA	Intergenic	AluJo|SINE|Alu	-5782	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
212704	chr7	129777751	129778180	+	0	NA	Intergenic	Intergenic	-2951	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
76412	chr15	74768701	74769700	+	0	NA	Intergenic	Intergenic	-12880	NM_001127190	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
180672	chr5	18747951	18748250	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	940826	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
24896	chr10	1038521	1039480	+	0	NA	TTS (NM_001317957)	TTS (NM_001317957)	9886	NM_001317957	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
234560	chrX	19736321	19736580	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	63323	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
166725	chr3	121649451	121649750	+	0	NA	intron (NM_005335, intron 3 of 13)	L2a|LINE|L2	11303	NM_005335	3059		NM_005335	ENSG00000180353	HCLS1	CTTNL|HS1|lckBP1|p75	hematopoietic cell-specific Lyn substrate 1	protein-coding
90023	chr16	89896551	89896650	+	0	NA	intron (NM_014972, intron 9 of 17)	AluSc8|SINE|Alu	-22262	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
47980	chr12	6899651	6900430	+	0	NA	Intergenic	MER66A|LTR|ERV1	-4782	NM_006992	10233		NM_006992	ENSG00000010626	LRRC23	LRPB7	leucine rich repeat containing 23	protein-coding
233050	chr9	137055321	137056030	+	0	NA	Intergenic	Intergenic	-1614	NM_203468	954		NM_001246	ENSG00000054179	ENTPD2	CD39L1|NTPDase-2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding
108304	chr18	63366901	63368030	+	0	NA	promoter-TSS (NM_002035)	promoter-TSS (NM_002035)	-259	NM_002035	2531		NM_002035	ENSG00000119537	KDSR	DHSR|EKVP4|FVT1|SDR35C1	3-ketodihydrosphingosine reductase	protein-coding
112352	chr19	5952221	5952600	+	0	NA	intron (NM_003624, intron 2 of 16)	intron (NM_003624, intron 2 of 16)	25730	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
206958	chr7	38265771	38265930	+	0	NA	intron (NM_001003806, intron 1 of 3)	MIRc|SINE|MIR	7797	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
20685	chr1	200529451	200529750	+	0	NA	Intergenic	Intergenic	89238	NM_001305792	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
24351	chr1	240455301	240455500	+	0	NA	intron (NM_020066, intron 16 of 17)	AluJb|SINE|Alu	156755	NM_022469	64388		NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC|STHAG9	gremlin 2, DAN family BMP antagonist	protein-coding
145114	chr20	38789521	38789780	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-16047	NM_001172735	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
65454	chr14	51744951	51745330	+	0	NA	Intergenic	SATR1|Satellite|Satellite	27857	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
231303	chr9	130049421	130049680	+	0	NA	Intergenic	AluJb|SINE|Alu	-4156	NM_001287346	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
109695	chr19	1051051	1051500	+	0	NA	exon (NM_019112, exon 20 of 47)	exon (NM_019112, exon 20 of 47)	11168	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
53518	chr12	66861171	66861370	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-57001	NM_001379348	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
42976	chr11	73777021	73777480	+	0	NA	Intergenic	AluSg|SINE|Alu	-10624	NR_134658	51642		NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48|mL48	mitochondrial ribosomal protein L48	protein-coding
64996	chr14	38103821	38104180	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-103904	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
108031	chr18	58970871	58971430	+	0	NA	intron (NR_148459, intron 9 of 11)	intron (NR_148459, intron 9 of 11)	-64529	NR_024021	390858		NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
52707	chr12	56573001	56574050	+	0	NA	intron (NM_002898, intron 5 of 13)	intron (NM_002898, intron 5 of 13)	51705	NM_002898	5939		NM_002898	ENSG00000076067	RBMS2	SCR3	RNA binding motif single stranded interacting protein 2	protein-coding
122032	chr19	48628751	48629280	+	0	NA	exon (NM_001243876, exon 6 of 6)	exon (NM_001243876, exon 6 of 6)	3986	NM_001204160	56848		NM_020126	ENSG00000063176	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding
123661	chr19	54833721	54834180	+	0	NA	intron (NM_001281971, intron 1 of 7).15	intron (NM_001281971, intron 1 of 7).15	1243	NM_001281971	3809		NM_012314	ENSG00000221957	KIR2DS4	CD158I|KIR-2DS4|KIR1D|KIR412|KKA3|NKAT-8|NKAT8	killer cell immunoglobulin like receptor, two Ig domains and short cytoplasmic tail 4	protein-coding
225996	chr9	41293271	41293630	+	0	NA	Intergenic	Intergenic	-59615	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
218530	chr8	53855551	53856050	+	0	NA	intron (NM_001286674, intron 1 of 2)	intron (NM_001286674, intron 1 of 2)	4005	NM_001286675	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
206608	chr7	35816021	35816280	+	0	NA	intron (NM_001788, intron 1 of 12)	L1MB7|LINE|L1	14931	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
27621	chr10	32938571	32939200	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	-3327	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
53382	chr12	64685851	64685950	+	0	NA	intron (NR_040718, intron 2 of 3)	intron (NR_040718, intron 2 of 3)	-63295	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
8158	chr1	39487851	39488450	+	0	NA	Intergenic	Intergenic	-3486	NM_181809	353500		NM_181809	ENSG00000183682	BMP8A	OP-2|Op2	bone morphogenetic protein 8a	protein-coding
170002	chr3	180594971	180595130	+	0	NA	Intergenic	Intergenic	-7113	NM_001042601	151613		NM_133462	ENSG00000163728	TTC14	DRDL5813|PRO19630	tetratricopeptide repeat domain 14	protein-coding
97934	chr17	45162951	45164050	+	0	NA	intron (NM_144608, intron 3 of 3)	intron (NM_144608, intron 3 of 3)	1641	NM_001303444	124790		NM_144608	ENSG00000168517	HEXIM2	L3	HEXIM P-TEFb complex subunit 2	protein-coding
235318	chrX	42946621	42947180	+	0	NA	Intergenic	Intergenic	-168737	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
188794	chr5	157861051	157861550	+	0	NA	Intergenic	Intergenic	-2155	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
237495	chrX	119942901	119943920	+	0	NA	exon (NM_024528, exon 1 of 9)	exon (NM_024528, exon 1 of 9)	341	NM_024528	79576		NM_024528	ENSG00000101882	NKAP	MRXSHD	NFKB activating protein	protein-coding
10309	chr1	64865121	64865830	+	0	NA	intron (NM_001321857, intron 7 of 24)	intron (NM_001321857, intron 7 of 24)	101074	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
136890	chr2	189347471	189347700	+	0	NA	Intergenic	Intergenic	-93848	NM_001303096	84128		NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
113964	chr19	10799321	10800680	+	0	NA	intron (NM_001005362, intron 11 of 19)	AluSz|SINE|Alu	17496	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
65232	chr14	49862301	49863500	+	0	NA	promoter-TSS (NR_027260)	promoter-TSS (NR_027260)	-51	NR_027260	378706		NR_027260	ENSG00000274012	RN7SL2	7L1C|7L30.1|7SL1c|RNSRP2	RNA component of signal recognition particle 7SL2	scRNA
29039	chr10	67699921	67700180	+	0	NA	Intergenic	L1PA3|LINE|L1	-3855	NM_013266	29119		NM_013266	ENSG00000183230	CTNNA3	ARVD13|VR22	catenin alpha 3	protein-coding
34256	chr10	131454021	131454280	+	0	NA	Intergenic	Intergenic	-142429	NM_174937	256536		NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1 like	protein-coding
182480	chr5	62394921	62395580	+	0	NA	intron (NM_001348076, intron 6 of 10)	AluSq2|SINE|Alu	8655	NM_014473	27292		NM_014473	ENSG00000086189	DIMT1	DIM1|DIMT1L|HSA9761|HUSSY5	DIM1 rRNA methyltransferase and ribosome maturation factor	protein-coding
19897	chr1	183887971	183889030	+	0	NA	exon (NM_001297671, exon 8 of 18)	exon (NM_001297671, exon 8 of 18)	83380	NM_001297671	23179		NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
87287	chr16	70051301	70052130	+	0	NA	intron (NR_003610, intron 1 of 25)	SVA_E|Retroposon|SVA	14233	NR_003610	283970		NM_199134	ENSG00000196696	PDXDC2P-NPIPB14P	-	PDXDC2P-NPIPB14P readthrough, transcribed pseudogene	pseudo
140695	chr2	234288701	234289380	+	0	NA	Intergenic	Intergenic	165555	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
187308	chr5	141610101	141610300	+	0	NA	intron (NM_005219, intron 1 of 27)	AluSg4|SINE|Alu	8800	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
198878	chr6	109452771	109453280	+	0	NA	intron (NM_022765, intron 4 of 24)	AluSz|SINE|Alu	2747	NM_022765	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
222939	chr8	143023751	143024990	+	0	NA	Intergenic	CpG	5841	NM_002346	4061		NM_002346	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	lymphocyte antigen 6 family member E	protein-coding
79644	chr16	1185671	1186800	+	0	NA	intron (NM_021098, intron 2 of 34)	CpG	32994	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
61798	chr13	75480751	75481050	+	0	NA	intron (NM_014832, intron 1 of 20)	CpG	1268	NM_001286659	9882		NM_014832	ENSG00000136111	TBC1D4	AS160|NIDDM5	TBC1 domain family member 4	protein-coding
26953	chr10	26556951	26557350	+	0	NA	intron (NM_019043, intron 11 of 14)	intron (NM_019043, intron 11 of 14)	22157	NR_134472	101929117		NR_134472		LINC03028	-	long intergenic non-protein coding RNA 3028	ncRNA
58450	chr12	132080701	132080900	+	0	NA	TTS (NM_015409)	TTS (NM_015409)	-3483	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
60096	chr13	36432971	36433130	+	0	NA	exon (NM_003914, exon 2 of 9)	exon (NM_003914, exon 2 of 9)	555	NM_003914	8900		NM_003914	ENSG00000133101	CCNA1	CT146	cyclin A1	protein-coding
36714	chr11	9005251	9005350	+	0	NA	Intergenic	L2b|LINE|L2	-1299	NM_020645	56675		NM_020645	ENSG00000175352	NRIP3	C11orf14|NY-SAR-105	nuclear receptor interacting protein 3	protein-coding
225640	chr9	36342151	36342530	+	0	NA	exon (NM_022781, exon 11 of 12)	exon (NM_022781, exon 11 of 12)	57929	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
162255	chr3	47287471	47287630	+	0	NA	intron (NM_025010, intron 1 of 9)	AluSz|SINE|Alu	4606	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
171447	chr3	196314501	196315000	+	0	NA	intron (NM_152773, intron 2 of 4)	AluJr|SINE|Alu	3490	NM_001351628	255758		NM_152773	ENSG00000213123	DYNLT2B	SRTD17|TCTEX1D2	dynein light chain Tctex-type 2B	protein-coding
119338	chr19	39958101	39958300	+	0	NA	Intergenic	LTR7|LTR|ERV1	-12805	NM_153001	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
59402	chr13	25204871	25205030	+	0	NA	Intergenic	Intergenic	23618	NR_120427	102723318		NR_120427	ENSG00000238169	LINC01053	-	long intergenic non-protein coding RNA 1053	ncRNA
107798	chr18	51181801	51182400	+	0	NA	intron (NM_016626, intron 1 of 1)	MER44A|DNA|TcMar-Tigger	15581	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
80636	chr16	2990501	2990700	+	0	NA	intron (NR_033861, intron 2 of 4)	intron (NR_033861, intron 2 of 4)	1546	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
123805	chr19	55163371	55163530	+	0	NA	intron (NM_178837, intron 4 of 11)	AluJo|SINE|Alu	3163	NM_001256715	352909		NM_178837	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	dynein axonemal assembly factor 3	protein-coding
125146	chr2	10009771	10009930	+	0	NA	Intergenic	Intergenic	33551	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
226221	chr9	65783221	65783550	+	0	NA	Intergenic	L1PA7|LINE|L1	-7736	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
188693	chr5	157292751	157293650	+	0	NA	intron (NM_001291721, intron 3 of 29)	AluSx1|SINE|Alu	23876	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
173765	chr4	16916721	16917050	+	0	NA	Intergenic	Intergenic	-18076	NM_001304435	9079		NM_001290	ENSG00000169744	LDB2	CLIM1|LDB-2|LDB1	LIM domain binding 2	protein-coding
36675	chr11	8267901	8268700	+	0	NA	intron (NM_001270428, intron 1 of 3)	CpG	487	NM_001270428	4004		NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
73523	chr15	43797951	43798300	+	0	NA	intron (NM_001258031, intron 4 of 11)	AluSc8|SINE|Alu	1972	NM_001258031	619189		NM_001258031	ENSG00000184716	SERINC4	-	serine incorporator 4	protein-coding
129058	chr2	65070401	65070780	+	0	NA	intron (NM_015147, intron 2 of 6)	intron (NM_015147, intron 2 of 6)	14174	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
177051	chr4	107992171	107992930	+	0	NA	intron (NM_001184705, intron 1 of 8)	intron (NM_001184705, intron 1 of 8)	2661	NM_005327	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
186614	chr5	138531021	138532130	+	0	NA	intron (NM_001291975, intron 2 of 11)	intron (NM_001291975, intron 2 of 11)	10136	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
166892	chr3	124620631	124621030	+	0	NA	intron (NM_001322999, intron 1 of 14)	intron (NM_001322999, intron 1 of 14)	36171	NM_001322997	8997		NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|KALNC2|TRAD	kalirin RhoGEF kinase	protein-coding
189767	chr5	176648461	176649880	+	0	NA	intron (NM_001366492, intron 1 of 6)	intron (NM_001366492, intron 1 of 6)	1686	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
142970	chr20	19952551	19952850	+	0	NA	intron (NM_001242581, intron 3 of 11)	intron (NM_001242581, intron 3 of 11)	-64590	NM_181528	51126		NM_016100	ENSG00000173418	NAA20	MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein-coding
58818	chr12	132827571	132829900	+	0	NA	promoter-TSS (NM_005895)	promoter-TSS (NM_005895)	134	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
35749	chr11	2138471	2138730	+	0	NA	5' UTR (NM_000612, exon 1 of 4)	5' UTR (NM_000612, exon 1 of 4)	789	NM_000612	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
31741	chr10	97761371	97761530	+	0	NA	TTS (NM_001174122)	TTS (NM_001174122)	10549	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
200185	chr6	130825871	130826030	+	0	NA	Intergenic	Intergenic	-1456	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
191931	chr6	15623521	15624000	+	0	NA	intron (NM_183040, intron 5 of 8)	intron (NM_183040, intron 5 of 8)	39268	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
34776	chr11	210471	210630	+	0	NA	intron (NM_001286134, intron 3 of 9)	intron (NM_001286134, intron 3 of 9)	1214	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
217165	chr8	26294771	26295300	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	1819	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
135794	chr2	169824151	169825280	+	0	NA	5' UTR (NM_014168, exon 1 of 7)	5' UTR (NM_014168, exon 1 of 7)	190	NM_014168	29081		NM_014168	ENSG00000138382	METTL5	HSPC133|MRT72	methyltransferase 5, N6-adenosine	protein-coding
226843	chr9	77978201	77978880	+	0	NA	intron (NM_002072, intron 1 of 6)	HAL1ME|LINE|L1	53271	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
96091	chr17	39614801	39615200	+	0	NA	Intergenic	Intergenic	-7080	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
84163	chr16	29792471	29793280	+	0	NA	intron (NM_001256269, intron 2 of 14)	L2c|LINE|L2	1907	NM_001256270	3835		NM_007317	ENSG00000079616	KIF22	A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2	kinesin family member 22	protein-coding
90393	chr17	1291401	1291600	+	0	NA	intron (NM_172367, intron 1 of 2)	THE1C|LTR|ERVL-MaLR	11838	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
152971	chr22	23088001	23088600	+	0	NA	intron (NM_002073, intron 1 of 2)	intron (NM_002073, intron 1 of 2)	17781	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
78781	chr15	99422401	99422800	+	0	NA	Intergenic	AluSq4|SINE|Alu	-142817	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
58111	chr12	124861701	124862350	+	0	NA	intron (NR_160422, intron 1 of 11)	intron (NR_160422, intron 1 of 11)	1839	NM_001367981	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
102598	chr17	75904071	75905650	+	0	NA	promoter-TSS (NM_032478)	promoter-TSS (NM_032478)	24	NM_032478	64978		NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3|mL38	mitochondrial ribosomal protein L38	protein-coding
201810	chr6	150010401	150011300	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-5706	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
55063	chr12	96484851	96485850	+	0	NA	Intergenic	Intergenic	-4227	NM_001306084	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
91208	chr17	3918471	3919530	+	0	NA	Intergenic	MIRb|SINE|MIR	-2535	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
85423	chr16	50330171	50330330	+	0	NA	intron (NM_013263, intron 8 of 16)	LTR39-int|LTR|ERV1	37634	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
13012	chr1	111191121	111191950	+	0	NA	intron (NM_001271833, intron 8 of 11)	intron (NM_001271833, intron 8 of 11)	9111	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
223235	chr8	143613601	143613800	+	0	NA	intron (NM_003313, intron 8 of 10)	intron (NM_003313, intron 8 of 10)	3849	NM_003313	7264		NM_003313	ENSG00000104522	GFUS	FX|P35B|SDR4E1|TSTA3	GDP-L-fucose synthase	protein-coding
121356	chr19	46838971	46839330	+	0	NA	intron (NM_021575, intron 2 of 3)	AluSz|SINE|Alu	-8446	NR_024258	100170220		NR_024258		SNAR-E	-	small NF90 (ILF3) associated RNA E	snRNA
137383	chr2	196202421	196202680	+	0	NA	intron (NM_001348768, intron 28 of 28)	MIRb|SINE|MIR	-30972	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
163609	chr3	51992751	51993130	+	0	NA	TTS (NM_000992)	TTS (NM_000992)	2955	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
88406	chr16	84651201	84651400	+	0	NA	intron (NM_024731, intron 2 of 4)	intron (NM_024731, intron 2 of 4)	2789	NM_024731	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
10107	chr1	59006851	59007280	+	0	NA	Intergenic	LTR33|LTR|ERVL	-13411	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
111036	chr19	3091851	3092150	+	0	NA	Intergenic	AluSp|SINE|Alu	-2362	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
85375	chr16	50276051	50276600	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	9774	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
189510	chr5	173326901	173327300	+	0	NA	intron (NM_003714, intron 1 of 3)	CpG	2403	NM_003714	8614		NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
224755	chr9	21959301	21960050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7464	NR_024274	51198		NM_016349		CDKN2A-AS1	C9orf53|CDKN2A-DT|bA149I2.3	CDKN2A antisense RNA 1	ncRNA
31978	chr10	100746971	100747280	+	0	NA	exon (NM_001374303, exon 3 of 3)	exon (NM_001374303, exon 3 of 3)	1543	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
186713	chr5	138981571	138981980	+	0	NA	intron (NM_022464, intron 7 of 9)	intron (NM_022464, intron 7 of 9)	106375	NM_001324008	1495		NM_001903	ENSG00000044115	CTNNA1	CAP102|MDBS2|MDPT2	catenin alpha 1	protein-coding
233444	chr9	137623871	137624030	+	0	NA	intron (NM_001354612, intron 1 of 8)	AluJb|SINE|Alu	4945	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
207314	chr7	44032651	44032750	+	0	NA	intron (NR_024116, intron 6 of 8)	AluSx|SINE|Alu	-6349	NR_072982	255031		NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
163959	chr3	52958201	52958400	+	0	NA	intron (NM_016329, intron 2 of 20)	L1PA10|LINE|L1	-60752	NM_001198974	100526772		NM_001198974	ENSG00000248592	STIMATE-MUSTN1	TMEM110-MUSTN1	STIMATE-MUSTN1 readthrough	protein-coding
30563	chr10	79822421	79822700	+	0	NA	intron (NR_120613, intron 1 of 6)	AluJr4|SINE|Alu	-3342	NR_029407	642361		NR_029407	ENSG00000272447	LOC642361	-	uncharacterized LOC642361	ncRNA
208880	chr7	73827301	73827700	+	0	NA	Intergenic	Intergenic	-3496	NM_001305	1364		NM_001305	ENSG00000189143	CLDN4	CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R	claudin 4	protein-coding
214863	chr7	151376771	151377130	+	0	NA	intron (NM_016118, intron 14 of 14)	intron (NM_016118, intron 14 of 14)	-32211	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
45507	chr11	118688251	118688800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8875	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
75806	chr15	68964451	68964550	+	0	NA	intron (NM_001184780, intron 1 of 15)	SVA_D|Retroposon|SVA	33975	NR_033672	134826889		NM_001184780		SPESP1-NOX5	-	SPESP1-NOX5 readthrough	protein-coding
193700	chr6	31127971	31128950	+	0	NA	intron (NM_014068, intron 2 of 5).5	MIR3|SINE|MIR	-8014	NM_001264	1041		NM_001264	ENSG00000204539	CDSN	HTSS|HTSS1|HYPT2|PSS|PSS1	corneodesmosin	protein-coding
78992	chr15	101767021	101767480	+	0	NA	Intergenic	Intergenic	-21512	NR_168283	100128108		NM_001321551	ENSG00000290760	UBE2Q2P13	-	UBE2Q2 pseudogene 13	pseudo
135693	chr2	168880701	168881100	+	0	NA	intron (NM_020675, intron 3 of 6)	Tigger1|DNA|TcMar-Tigger	9530	NM_020675	57405		NM_020675	ENSG00000152253	SPC25	AD024|SPBC25|hSpc25	SPC25 component of NDC80 kinetochore complex	protein-coding
70240	chr14	101441551	101441880	+	0	NA	promoter-TSS (NR_135240)	promoter-TSS (NR_135240)	-361	NR_135240	100507277		NR_135240	ENSG00000259082	LINC02314	-	long intergenic non-protein coding RNA 2314	ncRNA
78823	chr15	99705651	99705950	+	0	NA	intron (NM_001130927, intron 7 of 9)	intron (NM_001130927, intron 7 of 9)	27637	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
57343	chr12	121756451	121757350	+	0	NA	intron (NM_001080825, intron 5 of 11)	MIRb|SINE|MIR	36788	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
49304	chr12	21452951	21453850	+	0	NA	intron (NM_001350912, intron 5 of 11)	intron (NM_001350912, intron 5 of 11)	15485	NM_001350912	79912		NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
68732	chr14	90836101	90836930	+	0	NA	Intergenic	Intergenic	-20085	NM_001010854	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
149711	chr21	34072571	34074680	+	0	NA	promoter-TSS (NM_006933)	promoter-TSS (NM_006933)	47	NM_006933	6526		NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
76635	chr15	75597801	75598200	+	0	NA	TTS (NM_005701)	TTS (NM_005701)	-18685	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
119461	chr19	40423071	40424080	+	0	NA	intron (NM_013376, intron 1 of 1)	MIRc|SINE|MIR	2417	NM_013376	29950		NM_013376	ENSG00000197019	SERTAD1	SEI1|TRIP-Br1|TRIPBR1	SERTA domain containing 1	protein-coding
44361	chr11	102452401	102453780	+	0	NA	promoter-TSS (NM_052932)	promoter-TSS (NM_052932)	171	NR_135053	101928424		NR_135053	ENSG00000255337	TMEM123-DT	-	TMEM123 divergent transcript	ncRNA
125179	chr2	10078051	10078350	+	0	NA	intron (NM_001037160, intron 1 of 2)	L2|LINE|L2	2211	NM_001037160	192668		NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
60326	chr13	40663601	40665300	+	0	NA	intron (NM_002015, intron 1 of 2)	CpG	2191	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
210067	chr7	96303351	96303650	+	0	NA	intron (NM_001160210, intron 1 of 17)	intron (NM_001160210, intron 1 of 17)	18598	NM_014251	10165		NM_014251	ENSG00000004864	SLC25A13	ARALAR2|CITRIN|CTLN2|NICCD	solute carrier family 25 member 13	protein-coding
181218	chr5	39175921	39177400	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	42903	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
238833	chrX	154457201	154458790	+	0	NA	promoter-TSS (NM_017514)	promoter-TSS (NM_017514)	-286	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
137089	chr2	190929551	190929850	+	0	NA	intron (NM_014905, intron 12 of 17)	AluSx1|SINE|Alu	48879	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
207087	chr7	39978451	39978980	+	0	NA	intron (NM_003718, intron 1 of 13)	MER5A1|DNA|hAT-Charlie	28355	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
161650	chr3	43319551	43319850	+	0	NA	intron (NM_017719, intron 3 of 6)	L2a|LINE|L2	32262	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
143021	chr20	20860101	20860480	+	0	NA	Intergenic	Intergenic	-147646	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
82114	chr16	14653851	14654350	+	0	NA	intron (NM_016561, intron 4 of 7)	AluY|SINE|Alu	21149	NM_016561	51283		NM_016561	ENSG00000103429	BFAR	BAR|RNF47	bifunctional apoptosis regulator	protein-coding
101834	chr17	73710171	73710480	+	0	NA	Intergenic	Intergenic	-27529	NR_164140	100134391		NR_164140	ENSG00000263574	LOC100134391	-	uncharacterized LOC100134391	ncRNA
153020	chr22	23225501	23226650	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-36692	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
127262	chr2	38705721	38706200	+	0	NA	intron (NM_138801, intron 4 of 6)	AluSx|SINE|Alu	39846	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
191759	chr6	14046521	14046780	+	0	NA	Intergenic	Intergenic	-70606	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
227551	chr9	91948721	91949280	+	0	NA	intron (NM_001318204, intron 1 of 7)	CpG	1228	NM_004560	4920		NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
217504	chr8	29070301	29070500	+	0	NA	3' UTR (NM_015254, exon 40 of 40)	3' UTR (NM_015254, exon 40 of 40)	179086	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
230681	chr9	128721901	128722530	+	0	NA	intron (NM_032799, intron 2 of 4)	intron (NM_032799, intron 2 of 4)	1912	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
116593	chr19	18260401	18261150	+	0	NA	intron (NM_001145305, intron 3 of 3)	intron (NM_001145305, intron 3 of 3)	-5356	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
156513	chr22	41376671	41377030	+	0	NA	intron (NM_001145398, intron 1 of 3)	MIRb|SINE|MIR	-5092	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
185203	chr5	119414171	119414330	+	0	NA	Intergenic	MER11A|LTR|ERVK	-38247	NM_001199291	3295		NM_000414	ENSG00000133835	HSD17B4	DBP|MFE-2|MFP-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid 17-beta dehydrogenase 4	protein-coding
107330	chr18	45668771	45669330	+	0	NA	intron (NM_001242692, intron 16 of 20)	intron (NM_001242692, intron 16 of 20)	53574	NM_007163	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
119790	chr19	41321571	41322200	+	0	NA	intron (NM_001346100, intron 4 of 4)	intron (NM_001346100, intron 4 of 4)	11408	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
88355	chr16	84569571	84570130	+	0	NA	intron (NM_021149, intron 3 of 3)	intron (NM_021149, intron 3 of 3)	48228	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
159710	chr3	15645501	15646100	+	0	NA	3' UTR (NM_001281723, exon 4 of 4)	3' UTR (NM_001281723, exon 4 of 4)	43831	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
161900	chr3	45969121	45969780	+	0	NA	intron (NM_024513, intron 7 of 17)	intron (NM_024513, intron 7 of 17)	25986	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
55609	chr12	106919901	106920330	+	0	NA	Intergenic	Intergenic	-35607	NM_001319666	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
51601	chr12	52834651	52834950	+	0	NA	promoter-TSS (NM_175834)	promoter-TSS (NM_175834)	-489	NM_175834	338785		NM_175834	ENSG00000185640	KRT79	K6L|KRT6L	keratin 79	protein-coding
188288	chr5	151141251	151142150	+	0	NA	promoter-TSS (NM_001193544)	promoter-TSS (NM_001193544)	-16	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
43484	chr11	78312101	78312330	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	29665	NM_012296	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
203427	chr7	336421	336680	+	0	NA	Intergenic	CpG	-42875	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
133429	chr2	119223671	119224130	+	0	NA	promoter-TSS (NM_182915)	promoter-TSS (NM_182915)	66	NM_018234	55240		NM_018234	ENSG00000115107	STEAP3	AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde	STEAP3 metalloreductase	protein-coding
237982	chrX	134372701	134373630	+	0	NA	promoter-TSS (NM_032458)	promoter-TSS (NM_032458)	-147	NM_001015877	84295		NM_032335	ENSG00000156531	PHF6	BFLS|BORJ|CENP-31	PHD finger protein 6	protein-coding
164251	chr3	57196901	57197200	+	0	NA	TTS (NM_001376061)	TTS (NM_001376061)	2928	NM_003865	8820		NM_003865	ENSG00000163666	HESX1	ANF|CPHD5|RPX	HESX homeobox 1	protein-coding
77204	chr15	80970021	80970480	+	0	NA	intron (NR_126328, intron 1 of 2)	intron (NR_126328, intron 1 of 2)	19569	NR_126327	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
100711	chr17	63847601	63847800	+	0	NA	Intergenic	Intergenic	-5015	NM_001098426	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
147481	chr20	59147101	59147780	+	0	NA	intron (NM_001384354, intron 2 of 7)	intron (NM_001384354, intron 2 of 7)	-16381	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
46963	chr11	134658021	134658480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-77695	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
237213	chrX	109113751	109113850	+	0	NA	Intergenic	L1PA2|LINE|L1	368286	NM_001522	2986		NM_001522	ENSG00000101890	GUCY2F	CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2	guanylate cyclase 2F, retinal	protein-coding
198907	chr6	109706471	109707030	+	0	NA	intron (NM_014845, intron 1 of 22)	intron (NM_014845, intron 1 of 22)	15454	NM_014845	9896		NM_014845	ENSG00000112367	FIG4	ALS11|BOP|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1	FIG4 phosphoinositide 5-phosphatase	protein-coding
178350	chr4	145935651	145937000	+	0	NA	intron (NM_178835, intron 1 of 14)	CpG	2498	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
163731	chr3	52314451	52314750	+	0	NA	Intergenic	Intergenic	-1719	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
186136	chr5	134157571	134157830	+	0	NA	3' UTR (NM_006930, exon 5 of 5)	3' UTR (NM_006930, exon 5 of 5)	19250	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
202189	chr6	156197471	156197830	+	0	NA	Intergenic	Intergenic	-181100	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
132187	chr2	101831071	101831830	+	0	NA	intron (NM_001384572, intron 5 of 29)	intron (NM_001384572, intron 5 of 29)	133185	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
159567	chr3	14920971	14921780	+	0	NA	intron (NM_152536, intron 13 of 19)	intron (NM_152536, intron 13 of 19)	26130	NR_046252	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
9077	chr1	44840901	44841100	+	0	NA	intron (NM_001166292, intron 2 of 22)	AluSz6|SINE|Alu	1944	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
93430	chr17	18493051	18493550	+	0	NA	intron (NM_001040078, intron 10 of 10).2	L2a|LINE|L2	16511	NM_001040078	654346		NM_001040078	ENSG00000171916	LGALS9C	Gal-9B|LGALS9B	galectin 9C	protein-coding
157480	chr22	45306801	45307400	+	0	NA	Intergenic	MIRb|SINE|MIR	-1860	NR_146323	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
110264	chr19	1804201	1804400	+	0	NA	intron (NR_047593, intron 10 of 28)	AluSq2|SINE|Alu	7976	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
16879	chr1	155837351	155837450	+	0	NA	intron (NM_001282861, intron 2 of 20)	MER66-int|LTR|ERV1	19814	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
102566	chr17	75858151	75858250	+	0	NA	Intergenic	Intergenic	-1764	NM_001348170	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
107284	chr18	44683571	44683930	+	0	NA	intron (NM_015559, intron 1 of 5)	intron (NM_015559, intron 1 of 5)	2862	NM_015559	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
86824	chr16	67882371	67882550	+	0	NA	exon (NM_014329, exon 25 of 29)	exon (NM_014329, exon 25 of 29)	-2425	NM_001348682	123904		NM_198443	ENSG00000188038	NRN1L	MRCC2446|UNQ2446|cpg15-2	neuritin 1 like	protein-coding
131535	chr2	96617251	96617980	+	0	NA	intron (NR_146102, intron 4 of 20)	AluJr4|SINE|Alu	20376	NR_047658	55683		NM_017991	ENSG00000114982	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
198657	chr6	107821921	107822600	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	2053	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
144947	chr20	37064001	37064200	+	0	NA	intron (NM_183404, intron 7 of 20)	AluJb|SINE|Alu	31897	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
228256	chr9	97997971	97998130	+	0	NA	intron (NM_006401, intron 2 of 6)	intron (NM_006401, intron 2 of 6)	14709	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
152308	chr22	20335851	20335950	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-2130	NR_165637	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
220502	chr8	100573971	100574280	+	0	NA	intron (NM_001363720, intron 10 of 10)	intron (NM_001363720, intron 10 of 10)	-14366	NM_001270377	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
113132	chr19	8322821	8323180	+	0	NA	3' UTR (NM_001031, exon 4 of 4)	3' UTR (NM_001031, exon 4 of 4)	1504	NM_001031	6234		NM_001031	ENSG00000233927	RPS28	DBA15|S28|eS28	ribosomal protein S28	protein-coding
129358	chr2	68773571	68773730	+	0	NA	intron (NM_001364821, intron 1 of 10)	L1PA17|LINE|L1	-1260	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
160253	chr3	25460771	25461330	+	0	NA	intron (NM_001290217, intron 1 of 7)	intron (NM_001290217, intron 1 of 7)	2740	NM_001290217	5915		NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding
67449	chr14	70804501	70804830	+	0	NA	intron (NM_033141, intron 1 of 12)	intron (NM_033141, intron 1 of 12)	4506	NM_001284230	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
177351	chr4	110154301	110154900	+	0	NA	intron (NM_024090, intron 1 of 3)	AluJr|SINE|Alu	44015	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
104713	chr17	81553001	81554350	+	0	NA	Intergenic	Intergenic	-1322	NM_025161	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
212609	chr7	129188251	129189500	+	0	NA	5' UTR (NM_005631, exon 1 of 12)	5' UTR (NM_005631, exon 1 of 12)	242	NM_005631	6608		NM_005631	ENSG00000128602	SMO	CRJS|FZD11|Gx|PHLS|SMOH	smoothened, frizzled class receptor	protein-coding
197528	chr6	77463471	77463780	+	0	NA	promoter-TSS (NM_000863)	promoter-TSS (NM_000863)	-134	NM_000863	3351		NM_000863	ENSG00000135312	HTR1B	5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine receptor 1B	protein-coding
83928	chr16	29074421	29076180	+	0	NA	intron (NR_003369, intron 1 of 16)	intron (NR_003369, intron 1 of 16)	458	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
151411	chr21	46055701	46055900	+	0	NA	Intergenic	Intergenic	-42312	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
111491	chr19	3966821	3967130	+	0	NA	intron (NM_001348, intron 2 of 8)	intron (NM_001348, intron 2 of 8)	4124	NM_001348	1613		NM_001348	ENSG00000167657	DAPK3	DLK|ZIP|ZIPK	death associated protein kinase 3	protein-coding
80606	chr16	2954871	2955230	+	0	NA	Intergenic	Intergenic	-9225	NM_001253726	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
236486	chrX	71661221	71661680	+	0	NA	Intergenic	Intergenic	5418	NR_136576	100129291		NR_136576	ENSG00000237265	LOC100129291	-	chromosome X open reading frame 49 pseudogene	pseudo
208207	chr7	65082401	65082850	+	0	NA	Intergenic	AluJo|SINE|Alu	12087	NR_145713	109617022		NR_145713	ENSG00000206785	SNORA15B-2	SNORA15C	small nucleolar RNA, H/ACA box 15B-2	snoRNA
16746	chr1	155294801	155295730	+	0	NA	exon (NM_000298, exon 5 of 11)	exon (NM_000298, exon 5 of 11)	5687	NM_181871	5313		NM_000298	ENSG00000143627	PKLR	PK1|PKL|PKRL|RPK	pyruvate kinase L/R	protein-coding
138209	chr2	202691501	202691700	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	56631	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
148480	chr20	64051521	64051780	+	0	NA	Intergenic	Intergenic	-2011	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
59432	chr13	25752851	25753430	+	0	NA	intron (NM_016529, intron 25 of 36)	intron (NM_016529, intron 25 of 36)	284366	NM_001313741	51761		NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
119038	chr19	38952501	38952880	+	0	NA	promoter-TSS (NM_148169).2	promoter-TSS (NM_148169).2	-3	NM_148169	115290		NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
38856	chr11	47335721	47335980	+	0	NA	intron (NM_000256, intron 25 of 33)	intron (NM_000256, intron 25 of 33)	16852	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
158481	chr22	50782801	50784580	+	0	NA	promoter-TSS (NM_001350007)	promoter-TSS (NM_001350007)	-39	NR_026982	284942		NM_203302	ENSG00000291064	RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
46345	chr11	125623801	125624550	+	0	NA	promoter-TSS (NM_001114121)	promoter-TSS (NM_001114121)	-961	NM_001244846	1111		NM_001274	ENSG00000149554	CHEK1	CHK1|OZEMA21	checkpoint kinase 1	protein-coding
234784	chrX	23997351	23997650	+	0	NA	intron (NM_030624, intron 3 of 3)	AluSx|SINE|Alu	29686	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
59254	chr13	24020301	24020630	+	0	NA	intron (NM_001286792, intron 3 of 14)	intron (NM_001286792, intron 3 of 14)	40663	NR_104595	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
142693	chr20	8043721	8044080	+	0	NA	Intergenic	Intergenic	-24139	NM_021156	56255		NM_021156	ENSG00000125827	TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin related transmembrane protein 4	protein-coding
212959	chr7	130954101	130954700	+	0	NA	intron (NR_109853, intron 4 of 5)	L1ME2|LINE|L1	40936	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
141410	chr2	240923471	240924130	+	0	NA	intron (NM_001351305, intron 4 of 31)	intron (NM_001351305, intron 4 of 31)	17464	NM_001351305	728763		NM_001351305	ENSG00000226321	CROCC2	-	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding
187008	chr5	139751821	139752700	+	0	NA	Intergenic	Intergenic	-6037	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
111760	chr19	4383171	4383330	+	0	NA	intron (NM_001199943, intron 1 of 8)	AluJb|SINE|Alu	17297	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
29009	chr10	63515271	63515830	+	0	NA	intron (NM_001322258, intron 1 of 24)	L1MC1|LINE|L1	-5851	NM_001001330	221035		NM_001001330	ENSG00000165476	REEP3	C10orf74|Yip2b	receptor accessory protein 3	protein-coding
173833	chr4	20422471	20422780	+	0	NA	intron (NM_001289136, intron 4 of 35)	L2a|LINE|L2	30436	NR_037876	100505893		NR_037876	ENSG00000248228	SLIT2-IT1	-	SLIT2 intronic transcript 1	ncRNA
125720	chr2	20577921	20578780	+	0	NA	Intergenic	Intergenic	14198	NR_046836	100874343		NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1	ncRNA
19951	chr1	184843401	184844750	+	0	NA	intron (NM_052966, intron 5 of 13)	intron (NM_052966, intron 5 of 13)	-89217	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
10339	chr1	64915501	64916080	+	0	NA	intron (NM_001321852, intron 1 of 24)	HAL1|LINE|L1	50759	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
65202	chr14	49689471	49689980	+	0	NA	Intergenic	L1MC5|LINE|L1	-1345	NM_001197330	5427		NM_002692	ENSG00000100479	POLE2	DPE2	DNA polymerase epsilon 2, accessory subunit	protein-coding
118587	chr19	36378551	36379900	+	0	NA	promoter-TSS (NM_001297619)	promoter-TSS (NM_001297619)	-24	NM_001297619	57677		NM_020917	ENSG00000142065	ZFP14	ZNF531	ZFP14 zinc finger protein	protein-coding
37274	chr11	14676271	14676630	+	0	NA	intron (NM_001363569, intron 1 of 15)	Tigger3c|DNA|TcMar-Tigger	32646	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
235018	chrX	40005871	40006750	+	0	NA	Intergenic	CpG	91648	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
97904	chr17	45126671	45127500	+	0	NA	intron (NM_133373, intron 1 of 14)	MIR|SINE|MIR	5430	NM_133373	113026		NM_133373	ENSG00000161714	PLCD3	PLC-delta-3	phospholipase C delta 3	protein-coding
170302	chr3	184333801	184335100	+	0	NA	intron (NM_198244, intron 29 of 29)	intron (NM_198244, intron 29 of 29)	-1476	NM_001366134	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
135970	chr2	172096721	172097330	+	0	NA	Intergenic	CpG	5875	NM_004405	1746		NM_004405	ENSG00000115844	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
104614	chr17	81420821	81421080	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-20172	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
176245	chr4	86934201	86935400	+	0	NA	promoter-TSS (NM_001166693)	promoter-TSS (NM_001166693)	50	NR_038841	100506746		NR_038841		AFF1-AS1	-	AFF1 antisense RNA 1	ncRNA
122332	chr19	49154071	49154330	+	0	NA	exon (NM_002152, exon 1 of 6)	exon (NM_002152, exon 1 of 6)	1196	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
52737	chr12	56631371	56631530	+	0	NA	intron (NM_001351156, intron 1 of 30)	AluSg|SINE|Alu	-1124	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
108331	chr18	63963621	63964080	+	0	NA	Intergenic	LTR41C|LTR|ERVL	-6179	NM_001276490	5271		NM_002640	ENSG00000166401	SERPINB8	C18orf53|CAP2|PI-8|PI8|PSS5	serpin family B member 8	protein-coding
111517	chr19	4005951	4006350	+	0	NA	Intergenic	AluSx|SINE|Alu	-1586	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
151597	chr22	11212701	11213300	+	0	NA	Intergenic	SAR|Satellite|Satellite	-251471	NR_132320	102723780		NR_132320		FRG1FP	-	FSHD region gene 1 family member F, pseudogene	pseudo
18370	chr1	161313751	161314950	+	0	NA	promoter-TSS (NM_001035512)	promoter-TSS (NM_001035512)	-31	NM_001278172	6391		NM_003001	ENSG00000143252	SDHC	CYB560|CYBL|PGL3|PPGL3|QPS1|SDH3	succinate dehydrogenase complex subunit C	protein-coding
124578	chr2	675171	675330	+	0	NA	intron (NM_001352680, intron 3 of 5)	intron (NM_001352680, intron 3 of 5)	1454	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
152464	chr22	20708001	20708200	+	0	NA	intron (NM_001362863, intron 53 of 53)	intron (NM_001362863, intron 53 of 53)	6986	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
231003	chr9	129504101	129504300	+	0	NA	intron (NR_038955, intron 4 of 4)	AluSx|SINE|Alu	15540	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
142794	chr20	13635501	13636230	+	0	NA	intron (NR_136629, intron 1 of 11)	intron (NR_136629, intron 1 of 11)	3067	NM_017714	55617		NM_017714	ENSG00000089123	TASP1	C20orf13|SULEHS|dJ585I14.2	taspase 1	protein-coding
102260	chr17	75273921	75274330	+	0	NA	TTS (NR_036520)	TTS (NR_036520)	2826	NR_036520	100287042		NR_036520	ENSG00000263843	MIF4GD-DT	-	MIF4GD divergent transcript	ncRNA
143545	chr20	31585571	31585930	+	0	NA	Intergenic	MER4B|LTR|ERV1	-12487	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
112052	chr19	5142501	5142700	+	0	NA	intron (NM_015015, intron 18 of 22)	intron (NM_015015, intron 18 of 22)	173487	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
234683	chrX	20300971	20301130	+	0	NA	Intergenic	LTR33|LTR|ERVL	-34141	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
108004	chr18	58695751	58696230	+	0	NA	intron (NM_173844, intron 2 of 15)	Kanga1c|DNA|TcMar-Tc2	-24117	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
226876	chr9	78200921	78201550	+	0	NA	Intergenic	L1PA7|LINE|L1	-34840	NM_001098802	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
233350	chr9	137455201	137455400	+	0	NA	exon (NM_001178064, exon 6 of 15)	exon (NM_001178064, exon 6 of 15)	4034	NM_001130971	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228550	chr9	101532001	101532200	+	0	NA	Intergenic	AluSx|SINE|Alu	-1753	NM_019592	56254		NM_019592	ENSG00000155827	RNF20	BRE1|BRE1A|hBRE1	ring finger protein 20	protein-coding
15350	chr1	149938851	149939700	+	0	NA	3' UTR (NM_020205, exon 12 of 12)	3' UTR (NM_020205, exon 12 of 12)	-2396	NM_001145862	10903		NM_006697	ENSG00000014914	MTMR11	CRA	myotubularin related protein 11	protein-coding
179775	chr5	317971	318680	+	0	NA	intron (NR_165159, intron 3 of 13)	intron (NR_165159, intron 3 of 13)	-3389	NM_001377236	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
181797	chr5	50966201	50966780	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	3697	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
204630	chr7	5395121	5395580	+	0	NA	intron (NM_001080495, intron 2 of 29)	intron (NM_001080495, intron 2 of 29)	28196	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
7769	chr1	36182021	36182430	+	0	NA	Intergenic	AluY|SINE|Alu	26065	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
43392	chr11	77082171	77083250	+	0	NA	intron (NM_004055, intron 1 of 12)	intron (NM_004055, intron 1 of 12)	15739	NM_004055	726		NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
57965	chr12	123911371	123912850	+	0	NA	intron (NM_207437, intron 58 of 77)	intron (NM_207437, intron 58 of 77)	59949	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
145187	chr20	38880071	38880480	+	0	NA	intron (NM_001172735, intron 2 of 9)	L2b|LINE|L2	-46142	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
104136	chr17	80377901	80378300	+	0	NA	intron (NM_001256071, intron 54 of 67)	MER20|DNA|hAT-Charlie	-37067	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
69270	chr14	93059621	93060830	+	0	NA	intron (NM_014216, intron 3 of 10).2	LTR33|LTR|ERVL	-7227	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
212731	chr7	129859401	129859600	+	0	NA	intron (NM_003344, intron 3 of 6)	intron (NM_003344, intron 3 of 6)	-84486	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
11417	chr1	89719301	89720280	+	0	NA	TTS (NM_032270)	TTS (NM_032270)	86670	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
93679	chr17	19305651	19305750	+	0	NA	intron (NR_048576, intron 1 of 2)	intron (NR_048576, intron 1 of 2)	561	NR_048576	100874018		NR_048576	ENSG00000235397	EPN2-AS1	-	EPN2 antisense RNA 1	ncRNA
42668	chr11	72584101	72584930	+	0	NA	intron (NM_001243784, intron 18 of 30)	(CCCCG)n|Simple_repeat|Simple_repeat	13859	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
1199	chr1	2249821	2250080	+	0	NA	intron (NM_003036, intron 1 of 6)	AluSx1|SINE|Alu	21631	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
74706	chr15	63050071	63050230	+	0	NA	promoter-TSS (NR_147233)	promoter-TSS (NR_147233)	-763	NR_147233	111064646		NR_147233		TPM1-AS	TPM1-AS1	TPM1 antisense RNA	ncRNA
94040	chr17	27315501	27316480	+	0	NA	TTS (NM_001348350)	TTS (NM_001348350)	21876	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
28296	chr10	46096851	46097780	+	0	NA	Intergenic	Intergenic	-12180	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
83364	chr16	25108061	25108880	+	0	NA	intron (NR_120306, intron 1 of 2)	AluSq|SINE|Alu	3085	NR_120306	102723510		NR_120306		LCMT1-AS1	-	LCMT1 antisense RNA 1	ncRNA
167937	chr3	136187971	136188200	+	0	NA	intron (NM_018133, intron 1 of 1)	intron (NM_018133, intron 1 of 1)	6383	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
57990	chr12	124319121	124319780	+	0	NA	Intergenic	Intergenic	17792	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
101307	chr17	66491271	66491500	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-74531	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
231309	chr9	130057021	130057550	+	0	NA	intron (NM_001136557, intron 1 of 19)	AluJo|SINE|Alu	3379	NM_001136557	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
118806	chr19	38505151	38505450	+	0	NA	intron (NM_000540, intron 52 of 105)	intron (NM_000540, intron 52 of 105)	71609	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
143827	chr20	32490971	32491150	+	0	NA	intron (NM_001256798, intron 4 of 10)	L2a|LINE|L2	-7570	NM_001351680	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
210861	chr7	101126251	101126350	+	0	NA	promoter-TSS (NM_000602)	promoter-TSS (NM_000602)	-804	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
207881	chr7	50392121	50392580	+	0	NA	intron (NM_006060, intron 7 of 7)	intron (NM_006060, intron 7 of 7)	58000	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
98561	chr17	47702751	47704850	+	0	NA	intron (NM_014726, intron 6 of 8)	MIRb|SINE|MIR	8536	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
82505	chr16	17448701	17449950	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	21635	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
17608	chr1	156907351	156907850	+	0	NA	intron (NM_001080471, intron 6 of 22)	intron (NM_001080471, intron 6 of 22)	-13032	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
29663	chr10	71964271	71965230	+	0	NA	intron (NM_004273, intron 1 of 2)	CpG	355	NM_004273	9469		NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate sulfotransferase 3	protein-coding
119974	chr19	41899351	41900000	+	0	NA	intron (NM_004706, intron 14 of 28)	AluSp|SINE|Alu	15232	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
178444	chr4	147944351	147944880	+	0	NA	intron (NM_024605, intron 14 of 22)	intron (NM_024605, intron 14 of 22)	162020	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
146335	chr20	49236071	49236430	+	0	NA	intron (NM_017895, intron 13 of 20)	intron (NM_017895, intron 13 of 20)	16834	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
210605	chr7	100431971	100432530	+	0	NA	intron (NM_019606, intron 1 of 3)	intron (NM_019606, intron 1 of 3)	2419	NM_019606	56257		NM_019606	ENSG00000146834	MEPCE	BCDIN3	methylphosphate capping enzyme	protein-coding
188699	chr5	157301401	157301600	+	0	NA	intron (NM_014376, intron 6 of 30)	MLT1K|LTR|ERVL-MaLR	32176	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
201231	chr6	143594621	143594900	+	0	NA	Intergenic	Intergenic	-13420	NM_014721	9749		NM_014721	ENSG00000112419	PHACTR2	C6orf56	phosphatase and actin regulator 2	protein-coding
189216	chr5	171442851	171443150	+	0	NA	intron (NM_003862, intron 3 of 4)	MIR|SINE|MIR	23353	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
81533	chr16	9100421	9101100	+	0	NA	intron (NM_014117, intron 2 of 3)	AluSx1|SINE|Alu	9116	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
195792	chr6	40999651	40999830	+	0	NA	intron (NR_110873, intron 1 of 5)	intron (NR_110873, intron 1 of 5)	23540	NR_110873	101929555		NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
71908	chr15	22758821	22759080	+	0	NA	intron (NR_040057, intron 2 of 4)	intron (NR_040057, intron 2 of 4)	1093	NR_040057	283683		NR_040057	ENSG00000274253	LOC283683	-	uncharacterized LOC283683	ncRNA
38391	chr11	44870401	44870910	+	0	NA	intron (NM_130783, intron 3 of 9)	MIRc|SINE|MIR	79505	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
90940	chr17	2623251	2623550	+	0	NA	intron (NM_000430, intron 1 of 10)	AluY|SINE|Alu	29746	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
222933	chr8	143017301	143017800	+	0	NA	promoter-TSS (NM_002346)	promoter-TSS (NM_002346)	840	NR_026913	100133669		NR_026913		LY6E-DT	-	LY6E divergent transcript	ncRNA
98292	chr17	46227071	46227950	+	0	NA	Intergenic	AluY|SINE|Alu	-2143	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
129671	chr2	70289601	70290000	+	0	NA	intron (NM_001317165, intron 1 of 4)	AluJb|SINE|Alu	3424	NM_001317167	6637		NM_003096	ENSG00000143977	SNRPG	SMG|Sm-G	small nuclear ribonucleoprotein polypeptide G	protein-coding
210955	chr7	101363771	101364230	+	0	NA	intron (NM_133457, intron 1 of 12)	CpG	1125	NM_001278563	136227		NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen type XXVI alpha 1 chain	protein-coding
177678	chr4	121785451	121785750	+	0	NA	Intergenic	Intergenic	-15723	NM_005033	5393		NM_005033	ENSG00000123737	EXOSC9	PCH1D|PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
64397	chr14	24166101	24166300	+	0	NA	exon (NM_001385400, exon 10 of 10)	exon (NM_001385400, exon 10 of 10)	4935	NM_001385400	10379		NM_006084	ENSG00000213928	IRF9	IRF-9|ISGF3|ISGF3G|p48	interferon regulatory factor 9	protein-coding
42377	chr11	68828551	68828850	+	0	NA	intron (NM_001031847, intron 1 of 18)	intron (NM_001031847, intron 1 of 18)	13216	NM_001876	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
84481	chr16	30480871	30481400	+	0	NA	intron (NM_002209, intron 6 of 30)	AluSq|SINE|Alu	8393	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
35876	chr11	2392601	2392800	+	0	NA	intron (NM_004356, intron 2 of 7)	intron (NM_004356, intron 2 of 7)	-8050	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
34849	chr11	322351	322850	+	0	NA	Intergenic	LTR76|LTR|ERV1	-1740	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
77452	chr15	84346301	84346500	+	0	NA	Intergenic	Intergenic	-76119	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
226849	chr9	78002151	78002580	+	0	NA	intron (NM_002072, intron 1 of 6)	(AC)n|Simple_repeat|Simple_repeat	29446	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
20827	chr1	201448051	201448430	+	0	NA	Intergenic	Intergenic	20931	NR_073080	23612		NM_012396	ENSG00000174307	PHLDA3	TIH1	pleckstrin homology like domain family A member 3	protein-coding
152008	chr22	19291101	19292430	+	0	NA	promoter-TSS (NM_007098)	promoter-TSS (NM_007098)	-46	NM_001835	8218		NM_001835	ENSG00000070371	CLTCL1	CHC22|CLH22|CLTCL|CLTD	clathrin heavy chain like 1	protein-coding
232130	chr9	134012821	134013380	+	0	NA	Intergenic	CpG	-12376	NR_149319	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
186687	chr5	138660951	138661050	+	0	NA	Intergenic	AluJo|SINE|Alu	-85599	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
32464	chr10	102645801	102647800	+	0	NA	intron (NM_001345950, intron 1 of 4)	intron (NM_001345950, intron 1 of 4)	2305	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
101665	chr17	68298301	68298950	+	0	NA	intron (NM_001352901, intron 1 of 11)	MLT1A|LTR|ERVL-MaLR	6490	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
132636	chr2	108651101	108652000	+	0	NA	intron (NM_001371500, intron 1 of 2)	intron (NM_001371500, intron 1 of 2)	-3484	NM_001371499	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
108468	chr18	70622851	70622950	+	0	NA	Intergenic	Intergenic	28054	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
93400	chr17	18331771	18332780	+	0	NA	intron (NM_004169, intron 9 of 11).2	intron (NM_004169, intron 9 of 11).2	8611	NR_106836	102466733		NR_106836	ENSG00000283772	MIR6778	hsa-mir-6778	microRNA 6778	ncRNA
219926	chr8	86424351	86424650	+	0	NA	intron (NM_007013, intron 9 of 24)	SVA_C|Retroposon|SVA	81953	NM_007013	11059		NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
42179	chr11	67930301	67930730	+	0	NA	Intergenic	Intergenic	73582	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
64199	chr14	23022371	23022530	+	0	NA	Intergenic	Intergenic	-12307	NM_001282968	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
93168	chr17	17789401	17789600	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	-9971	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
123152	chr19	52191871	52192450	+	0	NA	intron (NR_033500, intron 1 of 13)	L2a|LINE|L2	2108	NM_014225	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
218236	chr8	42051601	42054430	+	0	NA	intron (NR_136589, intron 1 of 1)	AluSx1|SINE|Alu	-1028	NM_001305878	7994		NM_006766	ENSG00000083168	KAT6A	ARTHS|MOZ|MRD32|MYST-3|MYST3|RUNXBP2|ZC2HC6A|ZNF220	lysine acetyltransferase 6A	protein-coding
68348	chr14	77641321	77642380	+	0	NA	Intergenic	CpG	-25213	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
209842	chr7	90115301	90115500	+	0	NA	intron (NR_110029, intron 2 of 2)	AluJr4|SINE|Alu	-4000	NR_003551	442523		NR_003551	ENSG00000291119	DPY19L2P4	-	DPY19L2 pseudogene 4	pseudo
39585	chr11	61226571	61226930	+	0	NA	intron (NM_001079808, intron 4 of 8)	intron (NM_001079808, intron 4 of 8)	4401	NM_001079808	643847		NM_001079808	ENSG00000229183	PGA4	-	pepsinogen A4	protein-coding
174910	chr4	49102401	49102850	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	115983	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
60715	chr13	44143451	44143830	+	0	NA	non-coding (NR_104065, exon 2 of 5)	non-coding (NR_104065, exon 2 of 5)	1312	NR_104064	101929212		NR_104064	ENSG00000227258	SMIM2-AS1	C13orf44-AS1|C3orf81-AS1	SMIM2 antisense RNA 1	ncRNA
178050	chr4	139698371	139698550	+	0	NA	intron (NM_001204366, intron 3 of 5)	CpG	32641	NM_001204368	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
163704	chr3	52275171	52275880	+	0	NA	intron (NM_025222, intron 1 of 8)	L1MC4|LINE|L1	3124	NM_025222	80335		NM_025222	ENSG00000164091	WDR82	MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A	WD repeat domain 82	protein-coding
181542	chr5	43075121	43075580	+	0	NA	intron (NR_102752, intron 2 of 2)	MER48|LTR|ERV1	-7911	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
234298	chrX	13694121	13694730	+	0	NA	intron (NM_001195328, intron 1 of 1)	intron (NM_001195328, intron 1 of 1)	5297	NM_004251	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
94611	chr17	29758871	29759330	+	0	NA	intron (NM_033389, intron 2 of 14)	AluJo|SINE|Alu	2332	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
77234	chr15	81290121	81290380	+	0	NA	intron (NM_172217, intron 10 of 18)	intron (NM_172217, intron 10 of 18)	-6720	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
93861	chr17	21023151	21023450	+	0	NA	intron (NM_015276, intron 2 of 12)	L1PREC2|LINE|L1	19711	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
60674	chr13	43075771	43076000	+	0	NA	intron (NM_013238, intron 3 of 5)	AluSx|SINE|Alu	-37280	NR_047013	100874159		NR_047013		LINC00400	-	long intergenic non-protein coding RNA 400	ncRNA
187464	chr5	142129851	142130230	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	21261	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
51631	chr12	53000921	53001180	+	0	NA	Intergenic	AluSp|SINE|Alu	-5406	NM_001300821	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
190427	chr5	179833151	179833650	+	0	NA	intron (NM_003900, intron 6 of 7).2	intron (NM_003900, intron 6 of 7).2	12495	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
55639	chr12	107098321	107098580	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-4901	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
69750	chr14	98982601	98983000	+	0	NA	Intergenic	Intergenic	271187	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
163953	chr3	52895221	52895900	+	0	NA	intron (NM_001198974, intron 1 of 9)	intron (NM_001198974, intron 1 of 9)	1988	NM_198563	375346		NM_198563	ENSG00000213533	STIMATE	TMEM110	STIM activating enhancer	protein-coding
217531	chr8	29258501	29258780	+	0	NA	intron (NM_015254, intron 1 of 39)	intron (NM_015254, intron 1 of 39)	4430	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
196258	chr6	42923151	42923450	+	0	NA	exon (NM_001243169, exon 3 of 5)	exon (NM_001243169, exon 3 of 5)	-4702	NR_134881	10695		NM_006586	ENSG00000137161	CNPY3	CAG4A|DEE60|EIEE60|ERDA5|PRAT4A|TNRC5	canopy FGF signaling regulator 3	protein-coding
107030	chr18	32101571	32102550	+	0	NA	intron (NM_198128, intron 1 of 4)	AluJb|SINE|Alu	9454	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
67813	chr14	73783971	73784730	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	2858	NM_001043318	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
99380	chr17	49966271	49967180	+	0	NA	Intergenic	Intergenic	-2465	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
214869	chr7	151386051	151386580	+	0	NA	intron (NM_001284260, intron 3 of 5)	intron (NM_001284260, intron 3 of 5)	-22846	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
153320	chr22	24268821	24269080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1867	NR_103546	101730217		NR_103546	ENSG00000258555	SPECC1L-ADORA2A	-	SPECC1L-ADORA2A readthrough (NMD candidate)	ncRNA
217816	chr8	36490051	36490150	+	0	NA	Intergenic	L1PA2|LINE|L1	-294274	NR_134267	157855		NM_001031836	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|SPGF79|Slo3	potassium calcium-activated channel subfamily U member 1	protein-coding
238765	chrX	154354401	154354800	+	0	NA	intron (NM_001110556, intron 32 of 47)	intron (NM_001110556, intron 32 of 47)	20034	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
205697	chr7	23277201	23277930	+	0	NA	Intergenic	Intergenic	-21774	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
135699	chr2	168915871	168916230	+	0	NA	Intergenic	Intergenic	14759	NM_001081686	57818		NM_021176	ENSG00000152254	G6PC2	IGRP	glucose-6-phosphatase catalytic subunit 2	protein-coding
31666	chr10	97424021	97424300	+	0	NA	intron (NR_157582, intron 1 of 1)	intron (NR_157582, intron 1 of 1)	1897	NR_157582	644215		NR_157582		LOC644215	-	uncharacterized LOC644215	ncRNA
142288	chr20	3236671	3237100	+	0	NA	intron (NM_001174090, intron 2 of 19)	intron (NM_001174090, intron 2 of 19)	842	NM_032034	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
143321	chr20	25426151	25426250	+	0	NA	intron (NM_021067, intron 5 of 6)	L1MB3|LINE|L1	18517	NR_134574	9837		NM_021067	ENSG00000101003	GINS1	IMD55|PSF1	GINS complex subunit 1	protein-coding
210367	chr7	99592271	99592630	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-5817	NM_001195542	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
207387	chr7	44146001	44146850	+	0	NA	promoter-TSS (NM_001354803)	promoter-TSS (NM_001354803)	208	NM_001354801	2645		NM_000162	ENSG00000106633	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2|PNDM1	glucokinase	protein-coding
195547	chr6	37478371	37478530	+	0	NA	exon (NM_015050, exon 22 of 24)	exon (NM_015050, exon 22 of 24)	21443	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
163603	chr3	51986451	51987480	+	0	NA	intron (NM_001316331, intron 10 of 16)	intron (NM_001316331, intron 10 of 16)	3430	NM_000666	95		NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
137389	chr2	196214771	196215130	+	0	NA	intron (NM_001348768, intron 28 of 28)	intron (NM_001348768, intron 28 of 28)	-43372	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
183777	chr5	81837651	81837950	+	0	NA	Intergenic	Intergenic	-86547	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
76605	chr15	75369751	75370630	+	0	NA	3' UTR (NM_001145357, exon 21 of 21)	3' UTR (NM_001145357, exon 21 of 21)	-1563	NM_001256496	4123		NM_006715	ENSG00000140400	MAN2C1	CDDG2|MAN6A8|MANA|MANA1	mannosidase alpha class 2C member 1	protein-coding
68702	chr14	90415801	90416000	+	0	NA	Intergenic	AluSz6|SINE|Alu	17650	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
216188	chr8	11833301	11833500	+	0	NA	intron (NM_004462, intron 7 of 7)	intron (NM_004462, intron 7 of 7)	24256	NM_001287751	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
186719	chr5	139197671	139199200	+	0	NA	promoter-TSS (NM_001037633)	promoter-TSS (NM_001037633)	-67	NM_022464	64374		NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
101801	chr17	73255501	73255980	+	0	NA	intron (NM_001129885, intron 3 of 5)	intron (NM_001129885, intron 3 of 5)	6140	NM_001129885	642843		NM_001129885	ENSG00000187959	CPSF4L	-	cleavage and polyadenylation specific factor 4 like	protein-coding
49334	chr12	22044321	22044580	+	0	NA	Intergenic	Intergenic	-1724	NR_135117	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
191753	chr6	13873471	13874130	+	0	NA	Intergenic	CpG	-50646	NM_001165034	221687		NM_152737	ENSG00000180537	RNF182	-	ring finger protein 182	protein-coding
50650	chr12	48789421	48790100	+	0	NA	promoter-TSS (NM_015270)	promoter-TSS (NM_015270)	184	NR_110020	100506125		NR_110019	ENSG00000257660	ADCY6-DT	-	ADCY6 divergent transcript	ncRNA
75836	chr15	69462121	69463550	+	0	NA	Intergenic	Intergenic	10017	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
45537	chr11	118753921	118754380	+	0	NA	intron (NM_004397, intron 13 of 13)	intron (NM_004397, intron 13 of 13)	36798	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
114107	chr19	11130721	11131380	+	0	NA	intron (NM_001195798, intron 17 of 17)	L2a|LINE|L2	17576	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
91989	chr17	7432301	7432500	+	0	NA	exon (NM_001364672, exon 3 of 3)	exon (NM_001364672, exon 3 of 3)	-3035	NM_178518	284114		NM_178518	ENSG00000181284	TMEM102	CBAP|D2B	transmembrane protein 102	protein-coding
22658	chr1	223770821	223771280	+	0	NA	intron (NM_001748, intron 18 of 20)	intron (NM_001748, intron 18 of 20)	58511	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
95981	chr17	39167221	39167980	+	0	NA	Intergenic	Intergenic	-1439	NM_001143968	390790		NM_001143968	ENSG00000141748	ARL5C	ARL12	ADP ribosylation factor like GTPase 5C	protein-coding
207014	chr7	38364451	38364830	+	0	NA	intron (NR_040085, intron 3 of 3)	MER53|DNA|hAT	23063	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
185209	chr5	119452051	119453200	+	0	NA	exon (NM_000414, exon 1 of 24)	exon (NM_000414, exon 1 of 24)	128	NM_001374502	3295		NM_000414	ENSG00000133835	HSD17B4	DBP|MFE-2|MFP-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid 17-beta dehydrogenase 4	protein-coding
25796	chr10	11178021	11179600	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	13780	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
33556	chr10	119309021	119309650	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	-68637	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
574	chr1	1269201	1269630	+	0	NA	intron (NM_194458, intron 1 of 6)	intron (NM_194458, intron 1 of 6)	4439	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
156519	chr22	41385071	41385430	+	0	NA	intron (NM_003216, intron 1 of 3)	AluSp|SINE|Alu	3308	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
37754	chr11	31943051	31943150	+	0	NA	Intergenic	Intergenic	98218	NR_120526	100506675		NR_120526	ENSG00000254584	LINC03031	-	long intergenic non-protein coding RNA 3031	ncRNA
116599	chr19	18267071	18267700	+	0	NA	exon (NM_025249, exon 3 of 4)	exon (NM_025249, exon 3 of 4)	7067	NM_001145304	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
193185	chr6	29729021	29729550	+	0	NA	intron (NR_026972, intron 4 of 5).3	intron (NR_026972, intron 4 of 5).3	5851	NM_001098478	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
124986	chr2	9270851	9270950	+	0	NA	intron (NM_001135191, intron 1 of 26)	AluY|SINE|Alu	64088	NM_003887	8853		NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
153577	chr22	26669921	26670280	+	0	NA	non-coding (NR_003491, exon 5 of 5)	non-coding (NR_003491, exon 5 of 5)	-2743	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
72762	chr15	39665551	39665850	+	0	NA	intron (NM_001324338, intron 10 of 11)	intron (NM_001324338, intron 10 of 11)	84621	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
213255	chr7	134458101	134459700	+	0	NA	intron (NM_001346142, intron 1 of 9)	CpG	200	NM_001628	231		NM_001628	ENSG00000085662	AKR1B1	ADR|ALDR1|ALR2|AR	aldo-keto reductase family 1 member B	protein-coding
195825	chr6	41305951	41306500	+	0	NA	Intergenic	AluSz|SINE|Alu	-19480	NR_136332	54210		NM_018643	ENSG00000124731	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
64027	chr14	22516351	22517100	+	0	NA	Intergenic	L3b|LINE|CR1	-33766	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
131161	chr2	91526521	91527200	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	133089	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
74223	chr15	56422751	56422850	+	0	NA	intron (NR_169562, intron 11 of 12)	L1MB2|LINE|L1	42337	NM_018365	55329		NM_018365	ENSG00000138587	MNS1	HTX9|SPATA40	meiosis specific nuclear structural 1	protein-coding
126824	chr2	30679721	30679980	+	0	NA	Intergenic	Intergenic	127596	NM_144575	92291		NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
7095	chr1	32075421	32076300	+	0	NA	intron (NM_001319679, intron 3 of 6)	(GT)n|Simple_repeat|Simple_repeat	2921	NM_001319678	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
111336	chr19	3642921	3643980	+	0	NA	intron (NM_001300849, intron 12 of 16)	intron (NM_001300849, intron 12 of 16)	-16635	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
27913	chr10	41897901	41898100	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	470045	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
147594	chr20	61990851	61990950	+	0	NA	intron (NM_003185, intron 14 of 14)	HAL1M8|LINE|L1	-37238	NR_031658	100302168		NR_031658	ENSG00000284193	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
38021	chr11	35126101	35127100	+	0	NA	Intergenic	Intergenic	11432	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
88436	chr16	84765821	84766380	+	0	NA	intron (NM_005153, intron 10 of 13)	intron (NM_005153, intron 10 of 13)	-53885	NM_031476	83716		NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2|LGL1	cysteine rich secretory protein LCCL domain containing 2	protein-coding
137083	chr2	190922871	190923300	+	0	NA	intron (NM_014905, intron 9 of 17)	L2|LINE|L2	42264	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
121056	chr19	45860201	45860900	+	0	NA	intron (NM_004819, intron 1 of 26)	MIR|SINE|MIR	2597	NM_004819	8189		NM_004819	ENSG00000125755	SYMPK	Pta1|SPK|SYM	symplekin scaffold protein	protein-coding
10137	chr1	59814351	59815580	+	0	NA	promoter-TSS (NM_015888)	promoter-TSS (NM_015888)	16	NM_015888	51361		NM_015888	ENSG00000134709	HOOK1	HK1	hook microtubule tethering protein 1	protein-coding
238839	chrX	154464901	154465100	+	0	NA	intron (NM_017514, intron 10 of 32)	intron (NM_017514, intron 10 of 32)	6719	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
108837	chr18	79074371	79074530	+	0	NA	intron (NM_198531, intron 1 of 29)	L1MDb|LINE|L1	5056	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
125173	chr2	10058451	10059250	+	0	NA	3' UTR (NM_001037160, exon 3 of 3)	3' UTR (NM_001037160, exon 3 of 3)	14605	NM_001177718	8462		NM_003597	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	KLF transcription factor 11	protein-coding
91238	chr17	3943171	3943500	+	0	NA	intron (NM_174953, intron 11 of 22)	intron (NM_174953, intron 11 of 22)	21102	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
214735	chr7	151046271	151046430	+	0	NA	3' UTR (NM_001282292, exon 16 of 16)	3' UTR (NM_001282292, exon 16 of 16)	-1942	NM_020322	9311		NM_004769	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid sensing ion channel subunit 3	protein-coding
34413	chr10	132400871	132401280	+	0	NA	intron (NM_138499, intron 1 of 2)	intron (NM_138499, intron 1 of 2)	3875	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
108496	chr18	73842801	73843100	+	0	NA	Intergenic	Intergenic	304884	NM_152676	201456		NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
43022	chr11	73998521	73999000	+	0	NA	Intergenic	Intergenic	10325	NM_003356	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
54218	chr12	79925421	79925680	+	0	NA	intron (NM_001143885, intron 2 of 25)	intron (NM_001143885, intron 2 of 25)	9401	NM_001244992	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
49653	chr12	28698621	28699080	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-450428	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
188970	chr5	163467421	163468130	+	0	NA	intron (NM_012484, intron 4 of 17)	intron (NM_012484, intron 4 of 17)	7143	NM_001142556	3161		NM_012484	ENSG00000072571	HMMR	CD168|IHABP|RHAMM	hyaluronan mediated motility receptor	protein-coding
192728	chr6	26367271	26367850	+	0	NA	promoter-TSS (NM_001197246)	promoter-TSS (NM_001197246)	-618	NM_001197246	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
87872	chr16	77971601	77971830	+	0	NA	intron (NM_020927, intron 7 of 8)	intron (NM_020927, intron 7 of 8)	-50833	NM_005752	10143		NM_005752	ENSG00000166509	CLEC3A	CLECSF1	C-type lectin domain family 3 member A	protein-coding
177857	chr4	128191321	128191680	+	0	NA	intron (NR_146772, intron 14 of 19)	L1MA4|LINE|L1	96313	NM_006320	10424		NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
132114	chr2	101487071	101487230	+	0	NA	Intergenic	Intergenic	-12038	NM_001367509	731220		NM_207403	ENSG00000196460	RFX8	-	regulatory factor X8	protein-coding
151742	chr22	17781401	17782330	+	0	NA	Intergenic	Intergenic	4575	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
95792	chr17	38717221	38717830	+	0	NA	exon (NM_005937, exon 11 of 20)	exon (NM_005937, exon 11 of 20)	-2166	NR_039879	100616153		NR_039879	ENSG00000273627	MIR4726	-	microRNA 4726	ncRNA
19248	chr1	172669071	172669450	+	0	NA	Intergenic	Intergenic	10157	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
191654	chr6	13390721	13391180	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	17187	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
28485	chr10	49762051	49762440	+	0	NA	promoter-TSS (NM_001347825)	promoter-TSS (NM_001347825)	78	NM_018245	55753		NM_018245	ENSG00000197444	OGDHL	YOBELN	oxoglutarate dehydrogenase L	protein-coding
133423	chr2	118902501	118902900	+	0	NA	Intergenic	Intergenic	-39494	NM_006770	8685		NM_006770	ENSG00000019169	MARCO	SCARA2|SR-A6	macrophage receptor with collagenous structure	protein-coding
59615	chr13	27922221	27922480	+	0	NA	intron (NM_000209, intron 1 of 1)	intron (NM_000209, intron 1 of 1)	2350	NM_000209	3651		NM_000209	ENSG00000139515	PDX1	GSF|IDX-1|IPF1|IUF1|MODY4|PAGEN1|PDX-1|STF-1	pancreatic and duodenal homeobox 1	protein-coding
165972	chr3	108048271	108048430	+	0	NA	intron (NM_198793, intron 8 of 8)	intron (NM_198793, intron 8 of 8)	42681	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
79467	chr16	735871	736030	+	0	NA	intron (NM_022493, intron 4 of 10)	intron (NM_022493, intron 4 of 10)	5047	NM_022493	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
60927	chr13	46278571	46278730	+	0	NA	Intergenic	LTR36|LTR|ERV1	19194	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
53494	chr12	66290521	66291380	+	0	NA	Intergenic	Intergenic	-11543	NM_001370285	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
7405	chr1	32939671	32940380	+	0	NA	intron (NM_001127361, intron 7 of 8)	intron (NM_001127361, intron 7 of 8)	24784	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
255	chr1	916871	917730	+	0	NA	non-coding (NR_026874, exon 4 of 4)	non-coding (NR_026874, exon 4 of 4)	2392	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
107217	chr18	36185751	36186200	+	0	NA	intron (NR_134605, intron 1 of 1)	intron (NR_134605, intron 1 of 1)	1460	NR_134605	101927809		NR_134605	ENSG00000260552	COSMOC	-	cell fate and sterol metabolism associated divergent transcript of MOCOS	ncRNA
237219	chrX	109601301	109601700	+	0	NA	Intergenic	Intergenic	23672	NM_012282	23630		NM_012282	ENSG00000176076	KCNE5	KCNE1L	potassium voltage-gated channel subfamily E regulatory subunit 5	protein-coding
59774	chr13	30152801	30153000	+	0	NA	intron (NR_138041, intron 1 of 1)	intron (NR_138041, intron 1 of 1)	174	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
14645	chr1	145507851	145508580	+	0	NA	Intergenic	L2c|LINE|L2	99643	NR_104217	101929780		NR_104217	ENSG00000291005	NBPF25P	WI2-925H4.1	NBPF member 25, pseudogene	pseudo
200700	chr6	137387951	137388280	+	0	NA	Intergenic	Intergenic	106279	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
202183	chr6	156034271	156034580	+	0	NA	Intergenic	L1HS|LINE|L1	87628	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
113471	chr19	9936351	9936750	+	0	NA	promoter-TSS (NM_058164)	promoter-TSS (NM_058164)	-35	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
191904	chr6	15400571	15400930	+	0	NA	intron (NM_001267040, intron 2 of 17)	intron (NM_001267040, intron 2 of 17)	151895	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
234266	chrX	13257351	13257550	+	0	NA	Intergenic	Intergenic	46002	NR_146309	109729169		NR_146309	ENSG00000235385	LINC02154	MALR	long intergenic non-protein coding RNA 2154	ncRNA
55331	chr12	103947671	103948350	+	0	NA	TTS (NM_003299)	TTS (NM_003299)	9205	NM_001135570	728568		NM_001135570	ENSG00000204954	UQCC6	BR|BRAWNIN|C12orf73	ubiquinol-cytochrome c reductase complex assembly factor 6	protein-coding
51339	chr12	51388071	51388550	+	0	NA	intron (NM_007210, intron 2 of 11)	intron (NM_007210, intron 2 of 11)	-3007	NM_001267615	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
72566	chr15	34549321	34549680	+	0	NA	intron (NM_001023567, intron 4 of 23)	intron (NM_001023567, intron 4 of 23)	-21129	NR_036261	100422845		NR_036261	ENSG00000221065	MIR1233-2	-	microRNA 1233-2	ncRNA
42867	chr11	73295121	73295900	+	0	NA	intron (NM_001277207, intron 2 of 2)	MIR1_Amn|SINE|MIR	-12766	NM_014786	9828		NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor 17	protein-coding
33752	chr10	122460671	122460830	+	0	NA	promoter-TSS (NM_002775)	promoter-TSS (NM_002775)	-803	NM_002775	5654		NM_002775	ENSG00000166033	HTRA1	ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11	HtrA serine peptidase 1	protein-coding
25592	chr10	8047571	8047730	+	0	NA	Intergenic	Intergenic	4841	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
71162	chr14	105030301	105030500	+	0	NA	Intergenic	Intergenic	-9317	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
141829	chr20	384171	384330	+	0	NA	intron (NM_001301201, intron 2 of 4)	L2c|LINE|L2	2907	NM_001301190	57761		NM_021158	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
205679	chr7	23085921	23086280	+	0	NA	Intergenic	Intergenic	19603	NR_046220	100775104		NR_046220		KLHL7-DT	KLHL7-AS1|PLATAK	KLHL7 divergent transcript	ncRNA
103309	chr17	77885051	77885450	+	0	NA	Intergenic	(ATGG)n|Simple_repeat|Simple_repeat	-1163	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
228507	chr9	100322871	100323300	+	0	NA	intron (NM_001161584, intron 9 of 14)	intron (NM_001161584, intron 9 of 14)	29486	NM_001161584	54881		NM_017746	ENSG00000136891	TEX10	Ipi1|bA208F1.2	testis expressed 10	protein-coding
233307	chr9	137406701	137407780	+	0	NA	intron (NM_017820, intron 1 of 21)	CpG	15922	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
135677	chr2	168583021	168583530	+	0	NA	TTS (NR_039933)	TTS (NR_039933)	332	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
190652	chr5	181237801	181238330	+	0	NA	intron (NM_006098, intron 6 of 7)	intron (NM_006098, intron 6 of 7)	3824	NR_002592	619571		NR_002592	ENSG00000272296	SNORD96A	U96A	small nucleolar RNA, C/D box 96A	snoRNA
150744	chr21	43764921	43765180	+	0	NA	Intergenic	AluJr|SINE|Alu	11258	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
35366	chr11	1258051	1258350	+	0	NA	exon (NM_002458, exon 42 of 49)	exon (NM_002458, exon 42 of 49)	1595	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
116320	chr19	17807771	17808450	+	0	NA	exon (NM_014256, exon 2 of 3)	exon (NM_014256, exon 2 of 3)	12972	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
63281	chr13	113967651	113968550	+	0	NA	intron (NM_001365455, intron 4 of 6)	intron (NM_001365455, intron 4 of 6)	5976	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
122717	chr19	49983401	49984200	+	0	NA	intron (NM_001308420, intron 12 of 12)	intron (NM_001308420, intron 12 of 12)	14136	NM_001348364	400709		NM_001348364	ENSG00000161643	SIGLEC16	SIGLECP16|Siglec-P16	sialic acid binding Ig like lectin 16	protein-coding
117056	chr19	18986701	18987150	+	0	NA	Intergenic	Intergenic	-45708	NM_004838	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
37046	chr11	12197871	12199230	+	0	NA	intron (NR_144415, intron 2 of 26)	intron (NR_144415, intron 2 of 26)	34867	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
118969	chr19	38860921	38861180	+	0	NA	Intergenic	Intergenic	-8703	NM_001005335	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
89159	chr16	88531371	88531980	+	0	NA	promoter-TSS (NR_148997)	promoter-TSS (NR_148997)	-622	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
36533	chr11	6505501	6505980	+	0	NA	intron (NM_144666, intron 4 of 42)	intron (NM_144666, intron 4 of 42)	8460	NM_173589	144132		NM_144666	ENSG00000179532	DNHD1	C11orf47|CCDC35|DHCD1|DNHD1L|SPGF65	dynein heavy chain domain 1	protein-coding
197865	chr6	89084271	89084430	+	0	NA	3' UTR (NM_006813, exon 2 of 2)	3' UTR (NM_006813, exon 2 of 2)	3599	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
90442	chr17	1365351	1367150	+	0	NA	intron (NM_006761, intron 1 of 5)	intron (NM_006761, intron 1 of 5)	33972	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
190902	chr6	2781051	2781350	+	0	NA	intron (NM_020135, intron 4 of 6)	intron (NM_020135, intron 4 of 6)	-10824	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
183799	chr5	82276721	82277250	+	0	NA	intron (NM_001025, intron 2 of 3)	AluSx1|SINE|Alu	1369	NM_001025	6228		NM_001025	ENSG00000186468	RPS23	BTDD|MABAS|MCINS|PAMAS|S23|uS12	ribosomal protein S23	protein-coding
127336	chr2	39107621	39108080	+	0	NA	intron (NM_001382394, intron 1 of 22)	intron (NM_001382394, intron 1 of 22)	13201	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
957	chr1	1754171	1754550	+	0	NA	exon (NM_023018, exon 9 of 12)	exon (NM_023018, exon 9 of 12)	4282	NM_001198995	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
95596	chr17	37397701	37398100	+	0	NA	intron (NM_198839, intron 1 of 59)	intron (NM_198839, intron 1 of 59)	8911	NM_198839	31		NM_000664	ENSG00000278540	ACACA	ACAC|ACACAD|ACACalpha|ACC|ACC1|ACCA|ACCalpha|Acac1|hACC1	acetyl-CoA carboxylase alpha	protein-coding
150643	chr21	43404021	43404530	+	0	NA	Intergenic	Intergenic	22856	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
13829	chr1	117628171	117628330	+	0	NA	3' UTR (NM_017709, exon 2 of 2)	3' UTR (NM_017709, exon 2 of 2)	22202	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
197601	chr6	80638621	80639000	+	0	NA	Intergenic	Intergenic	532139	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
83874	chr16	28930601	28931180	+	0	NA	Intergenic	Intergenic	-1081	NM_001178098	930		NM_001770	ENSG00000177455	CD19	B4|CVID3	CD19 molecule	protein-coding
194163	chr6	32089271	32089630	+	0	NA	intron (NM_019105, intron 4 of 43).4	intron (NM_019105, intron 4 of 43).4	19888	NM_019105	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
21269	chr1	204397201	204397680	+	0	NA	Intergenic	AluSx3|SINE|Alu	14377	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
25261	chr10	6082521	6082780	+	0	NA	Intergenic	L1M7|LINE|L1	-6384	NM_032905	84991		NM_032905	ENSG00000134453	RBM17	SPF45	RNA binding motif protein 17	protein-coding
17807	chr1	159824071	159824380	+	0	NA	Intergenic	L2c|LINE|L2	-2648	NM_001330741	56833		NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
122689	chr19	49890071	49891580	+	0	NA	intron (NM_001385639, intron 7 of 7)	intron (NM_001385639, intron 7 of 7)	2650	NR_039905	100616314		NR_039905	ENSG00000284394	MIR4750	mir-4750	microRNA 4750	ncRNA
47024	chr12	385671	386100	+	0	NA	intron (NM_001042603, intron 2 of 27)	intron (NM_001042603, intron 2 of 27)	3435	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
151546	chr21	46539721	46539980	+	0	NA	intron (NM_206891, intron 16 of 19)	intron (NM_206891, intron 16 of 19)	65232	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
56048	chr12	110503251	110503350	+	0	NA	intron (NM_001286534, intron 1 of 11)	intron (NM_001286534, intron 1 of 11)	969	NM_001368054	144715		NM_152442	ENSG00000151164	RAD9B	-	RAD9 checkpoint clamp component B	protein-coding
84765	chr16	30982421	30982680	+	0	NA	intron (NM_014712, intron 17 of 18)	intron (NM_014712, intron 17 of 18)	-2657	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
62612	chr13	100542751	100543130	+	0	NA	intron (NM_001195087, intron 2 of 2)	intron (NM_001195087, intron 2 of 2)	-9138	NM_033110	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
48751	chr12	10849401	10850250	+	0	NA	promoter-TSS (NM_007244)	promoter-TSS (NM_007244)	-350	NM_007244	11272		NM_007244	ENSG00000111215	PRR4	LPRP|PROL4	proline rich 4	protein-coding
133231	chr2	113198721	113200450	+	0	NA	intron (NM_012455, intron 16 of 16)	intron (NM_012455, intron 16 of 16)	25614	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
197951	chr6	89947521	89947780	+	0	NA	intron (NM_021813, intron 7 of 8)	AluY|SINE|Alu	53181	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
134751	chr2	145184871	145185030	+	0	NA	Intergenic	Intergenic	516983	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
208250	chr7	65558871	65559230	+	0	NA	Intergenic	MIR3|SINE|MIR	-3985	NR_157838	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
20446	chr1	198524131	198524750	+	0	NA	intron (NM_133262, intron 3 of 3)	intron (NM_133262, intron 3 of 3)	16240	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
94319	chr17	28759101	28759850	+	0	NA	exon (NM_001288634, exon 3 of 3)	exon (NM_001288634, exon 3 of 3)	15464	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
57492	chr12	122090101	122090300	+	0	NA	intron (NM_014938, intron 1 of 16)	L1ME2z|LINE|L1	11444	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
104278	chr17	80830821	80831080	+	0	NA	intron (NM_020761, intron 9 of 33)	AluJb|SINE|Alu	-25318	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
173443	chr4	8239301	8239980	+	0	NA	intron (NM_001318480, intron 17 of 17)	intron (NM_001318480, intron 17 of 17)	-30114	NM_053044	94031		NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
122560	chr19	49659321	49660300	+	0	NA	exon (NM_001197122, exon 8 of 8)	exon (NM_001197122, exon 8 of 8)	-5332	NM_001282519	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
84790	chr16	31032521	31033800	+	0	NA	promoter-TSS (NM_004604)	promoter-TSS (NM_004604)	65	NM_001272096	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
218062	chr8	38909401	38909600	+	0	NA	intron (NM_021623, intron 1 of 11)	intron (NM_021623, intron 1 of 11)	8154	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
146470	chr20	49722971	49723130	+	0	NA	Intergenic	L2a|LINE|L2	-9172	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
137555	chr2	197236301	197237250	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	38784	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
18860	chr1	167804971	167805530	+	0	NA	Intergenic	Intergenic	83268	NM_024569	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
45771	chr11	119263571	119265150	+	0	NA	intron (NM_005188, intron 2 of 15)	intron (NM_005188, intron 2 of 15)	48652	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
41779	chr11	66846801	66847080	+	0	NA	TTS (NM_005133)	TTS (NM_005133)	3499	NM_001032279	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
238476	chrX	153400201	153400630	+	0	NA	intron (NM_001351293, intron 1 of 2)	intron (NM_001351293, intron 1 of 2)	281	NM_001351294	649238		NM_001351293	ENSG00000214897	PNMA6E	-	PNMA family member 6E	protein-coding
40933	chr11	65275021	65275330	+	0	NA	intron (NM_002689, intron 4 of 17)	intron (NM_002689, intron 4 of 17)	13213	NM_002689	23649		NM_002689	ENSG00000014138	POLA2	-	DNA polymerase alpha 2, accessory subunit	protein-coding
178834	chr4	153634721	153635150	+	0	NA	intron (NM_015196, intron 33 of 34)	intron (NM_015196, intron 33 of 34)	-5233	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
91055	chr17	2945071	2945830	+	0	NA	intron (NM_001100398, intron 3 of 23)	L1M4|LINE|L1	20445	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
9794	chr1	53585101	53585930	+	0	NA	intron (NM_147193, intron 3 of 9)	A-rich|Low_complexity|Low_complexity	126116	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
73454	chr15	43376121	43376500	+	0	NA	intron (NM_014444, intron 2 of 17)	intron (NM_014444, intron 2 of 17)	5209	NM_001286414	27229		NM_014444	ENSG00000137822	TUBGCP4	76P|GCP-4|GCP4|Grip76|MCCRP3	tubulin gamma complex component 4	protein-coding
120685	chr19	45152271	45154980	+	0	NA	exon (NM_198478, exon 4 of 4)	exon (NM_198478, exon 4 of 4)	6525	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
5409	chr1	25529601	25530200	+	0	NA	Intergenic	Intergenic	-13706	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
165294	chr3	80771151	80771250	+	0	NA	intron (NR_147145, intron 1 of 2)	intron (NR_147145, intron 1 of 2)	496	NR_147145	105377175		NR_147143	ENSG00000242781	LINC02050	-	long intergenic non-protein coding RNA 2050	ncRNA
234032	chrX	3837351	3837450	+	0	NA	intron (NR_034031, intron 1 of 4)	intron (NR_034031, intron 1 of 4)	6494	NR_034031	389906		NM_001045547	ENSG00000285756	LOC389906	-	zinc finger protein 839 pseudogene	pseudo
188858	chr5	159264161	159265030	+	0	NA	intron (NM_145049, intron 1 of 10)	intron (NM_145049, intron 1 of 10)	1305	NM_145049	134510		NM_145049	ENSG00000164332	UBLCP1	CPUB1	ubiquitin like domain containing CTD phosphatase 1	protein-coding
18895	chr1	168287051	168287400	+	0	NA	intron (NM_005149, intron 1 of 7)	L2a|LINE|L2	6348	NM_005149	9095		NM_005149	ENSG00000143178	TBX19	TBS19|TPIT|dJ747L4.1	T-box transcription factor 19	protein-coding
18401	chr1	161420951	161421300	+	0	NA	Intergenic	Intergenic	-53249	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
73232	chr15	41664071	41664230	+	0	NA	intron (NM_001164273, intron 1 of 23)	intron (NM_001164273, intron 1 of 23)	3738	NM_001080541	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
161065	chr3	38038541	38040830	+	0	NA	intron (NM_001321153, intron 1 of 36)	CpG	477	NM_007335	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
181746	chr5	50708471	50709130	+	0	NA	intron (NM_024615, intron 2 of 25)	AluJr|SINE|Alu	41386	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
120418	chr19	43901471	43902030	+	0	NA	promoter-TSS (NR_038334)	promoter-TSS (NR_038334)	53	NR_038334	100505715		NR_038334	ENSG00000267058	LOC100505715	-	uncharacterized LOC100505715	ncRNA
156471	chr22	41259421	41259680	+	0	NA	intron (NM_001278651, intron 7 of 16)	Charlie4a|DNA|hAT-Charlie	-6500	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
101350	chr17	67137821	67138730	+	0	NA	intron (NM_001330447, intron 21 of 32)	intron (NM_001330447, intron 21 of 32)	93721	NM_000727	786		NM_000727	ENSG00000108878	CACNG1	CACNLG	calcium voltage-gated channel auxiliary subunit gamma 1	protein-coding
59930	chr13	31145821	31146080	+	0	NA	intron (NM_001286503, intron 10 of 16)	AluJr|SINE|Alu	15954	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
221816	chr8	128016571	128016730	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	7752	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
177214	chr4	108467101	108467800	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-89783	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
204937	chr7	6258271	6258430	+	0	NA	intron (NM_004227, intron 1 of 12)	MLT1L|LTR|ERVL-MaLR	14274	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
103003	chr17	76791171	76791830	+	0	NA	Intergenic	Intergenic	-7544	NR_110837	101928514		NR_110837	ENSG00000267065	LINC02080	-	long intergenic non-protein coding RNA 2080	ncRNA
45948	chr11	121367221	121368450	+	0	NA	Intergenic	Intergenic	74967	NM_001024956	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
44033	chr11	95132971	95133130	+	0	NA	TTS (NM_015036)	TTS (NM_015036)	-17489	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
134939	chr2	151580751	151581050	+	0	NA	exon (NM_001164507, exon 104 of 182)	exon (NM_001164507, exon 104 of 182)	153576	NM_001271208	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
197739	chr6	87159401	87160100	+	0	NA	intron (NM_015021, intron 1 of 7)	AluSp|SINE|Alu	4185	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
113519	chr19	10112001	10114850	+	0	NA	intron (NM_002566, intron 1 of 1)	intron (NM_002566, intron 1 of 1)	1732	NM_002566	5032		NM_002566	ENSG00000244165	P2RY11	P2Y11	purinergic receptor P2Y11	protein-coding
70665	chr14	103072751	103073780	+	0	NA	Intergenic	Intergenic	-10945	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
153599	chr22	27800551	27800650	+	0	NA	5' UTR (NM_002430, exon 1 of 2)	5' UTR (NM_002430, exon 1 of 2)	1156	NM_002430	4330		NM_002430	ENSG00000169184	MN1	CEBALID|MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	MN1 proto-oncogene, transcriptional regulator	protein-coding
50417	chr12	47390671	47391200	+	0	NA	Intergenic	AluJb|SINE|Alu	-24073	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
164881	chr3	71085071	71085430	+	0	NA	intron (NM_001244810, intron 7 of 20)	AluJr|SINE|Alu	-20326	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
116577	chr19	18244551	18245150	+	0	NA	intron (NM_000923, intron 1 of 15)	AluSc8|SINE|Alu	3350	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
221531	chr8	124686021	124686680	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	42123	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
185424	chr5	131077301	131077830	+	0	NA	Intergenic	Intergenic	87691	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
5099	chr1	24833601	24834250	+	0	NA	intron (NM_013943, intron 4 of 5)	SVA_E|Retroposon|SVA	85491	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
65523	chr14	51910201	51910430	+	0	NA	intron (NM_053064, intron 2 of 3)	L2b|LINE|L2	8256	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
228886	chr9	112719421	112719850	+	0	NA	Intergenic	Intergenic	-1518	NM_001329587	58493		NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
68506	chr14	88461251	88461350	+	0	NA	Intergenic	L1PA4|LINE|L1	75643	NM_018418	55812		NM_018418	ENSG00000042317	SPATA7	HEL-S-296|HSD-3.1|HSD3|LCA3|RP94	spermatogenesis associated 7	protein-coding
107854	chr18	54717821	54718550	+	0	NA	intron (NM_001375327, intron 2 of 6)	intron (NM_001375327, intron 2 of 6)	328	NM_001375327	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
167630	chr3	129595621	129596330	+	0	NA	intron (NM_015103, intron 1 of 35)	MIRc|SINE|MIR	10701	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
7963	chr1	37752671	37753450	+	0	NA	exon (NM_001099439, exon 5 of 17)	exon (NM_001099439, exon 5 of 17)	12060	NM_001099439	284656		NM_173641	ENSG00000183317	EPHA10	DFNA88	EPH receptor A10	protein-coding
70690	chr14	103104771	103106350	+	0	NA	intron (NM_001077594, intron 6 of 10)	intron (NM_001077594, intron 6 of 10)	5416	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
8519	chr1	40987001	40987400	+	0	NA	intron (NR_125440, intron 3 of 17)	intron (NR_125440, intron 3 of 17)	-1319	NM_001301237	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
180544	chr5	14634971	14635350	+	0	NA	Intergenic	Intergenic	17222	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
170781	chr3	188916851	188917730	+	0	NA	Intergenic	L3|LINE|CR1	30349	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
82673	chr16	19697721	19697980	+	0	NA	intron (NR_158160, intron 27 of 28)	MIR|SINE|MIR	-18606	NR_130967	124152		NM_153208	ENSG00000174628	IQCK	-	IQ motif containing K	protein-coding
23139	chr1	226709621	226710480	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	29125	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
212812	chr7	130413471	130413830	+	0	NA	intron (NM_001257159, intron 2 of 8)	intron (NM_001257159, intron 2 of 8)	27366	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
206045	chr7	27143301	27143900	+	0	NA	promoter-TSS (NM_019102)	promoter-TSS (NM_019102)	81	NM_019102	3202		NM_019102	ENSG00000106004	HOXA5	HOX1|HOX1.3|HOX1C	homeobox A5	protein-coding
85042	chr16	31869401	31870080	+	0	NA	Intergenic	Intergenic	-4067	NM_003414	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
10631	chr1	70153851	70153950	+	0	NA	intron (NM_017768, intron 11 of 14)	AluJb|SINE|Alu	51679	NM_017768	55631		NM_017768	ENSG00000066557	LRRC40	dJ677H15.1	leucine rich repeat containing 40	protein-coding
6148	chr1	27391621	27393150	+	0	NA	promoter-TSS (NM_005281)	promoter-TSS (NM_005281)	-237	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
74502	chr15	60179801	60180080	+	0	NA	Intergenic	Intergenic	175629	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
164387	chr3	58308771	58309030	+	0	NA	intron (NM_001348712, intron 1 of 4)	L2c|LINE|L2	2380	NM_001348712	109703458		NM_001348712	ENSG00000255154	HTD2	-	hydroxyacyl-thioester dehydratase type 2	protein-coding
202458	chr6	158131921	158132200	+	0	NA	intron (NM_032861, intron 8 of 16)	intron (NM_032861, intron 8 of 16)	36202	NM_032861	84947		NM_032861	ENSG00000122335	SERAC1	-	serine active site containing 1	protein-coding
982	chr1	1825471	1825900	+	0	NA	intron (NM_001282539, intron 1 of 10)	AluYm1|SINE|Alu	-45654	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
192539	chr6	25132751	25133430	+	0	NA	intron (NR_027626, intron 2 of 6)	MER4-int|LTR|ERV1	4733	NR_002174	8418		NM_003570	ENSG00000293489	CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
13560	chr1	115807771	115808030	+	0	NA	Intergenic	Intergenic	32803	NM_001111061	4808		NM_005599	ENSG00000177551	NHLH2	HEN2|HH27|NSCL2|bHLHa34	nescient helix-loop-helix 2	protein-coding
229195	chr9	114681501	114682400	+	0	NA	intron (NR_163989, intron 1 of 5)	intron (NR_163989, intron 1 of 5)	242	NM_001199233	100505478		NM_001199233	ENSG00000230601	TEX48	-	testis expressed 48	protein-coding
22857	chr1	225471821	225472280	+	0	NA	Intergenic	Intergenic	-43195	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
23337	chr1	228109001	228110700	+	0	NA	promoter-TSS (NM_181464)	promoter-TSS (NM_181464)	-538	NM_001321284	128308		NM_181441	ENSG00000162910	MRPL55	AAVG5835|L55nt|MRP-L55|PRO19675|bL31m	mitochondrial ribosomal protein L55	protein-coding
47394	chr12	2797051	2797150	+	0	NA	intron (NR_146317, intron 1 of 3)	intron (NR_146317, intron 1 of 3)	2130	NM_002014	2288		NM_002014	ENSG00000004478	FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	FKBP prolyl isomerase 4	protein-coding
205990	chr7	26186501	26187100	+	0	NA	3' UTR (NM_004289, exon 4 of 4)	3' UTR (NM_004289, exon 4 of 4)	13946	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
174789	chr4	48033851	48034300	+	0	NA	intron (NM_207330, intron 4 of 5)	intron (NM_207330, intron 4 of 5)	17303	NM_207330	152519		NM_207330	ENSG00000163293	NIPAL1	NIPA3|NPAL1|SLC57A3	NIPA like domain containing 1	protein-coding
203161	chr6	167054101	167054500	+	0	NA	Intergenic	Intergenic	54903	NM_194429	11116		NM_007045	ENSG00000213066	CEP43	FGFR1OP|FOP	centrosomal protein 43	protein-coding
126108	chr2	25980751	25981180	+	0	NA	exon (NM_002254, exon 1 of 8)	exon (NM_002254, exon 1 of 8)	1532	NM_002254	3797		NM_002254	ENSG00000084731	KIF3C	-	kinesin family member 3C	protein-coding
130931	chr2	87492871	87493250	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	23110	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
151579	chr21	46626501	46627650	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-8520	NM_001286677	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
85554	chr16	53433601	53435000	+	0	NA	promoter-TSS (NM_001323608)	promoter-TSS (NM_001323608)	-171	NM_001323608	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
135858	chr2	170873171	170873730	+	0	NA	Intergenic	Intergenic	-55027	NM_001201428	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
13595	chr1	116360501	116360980	+	0	NA	Intergenic	Intergenic	-12504	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
96210	chr17	39766871	39768100	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	10740	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
160889	chr3	33732521	33733000	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-14506	NM_001365629	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
87362	chr16	70395321	70395690	+	0	NA	intron (NM_006927, intron 2 of 6)	intron (NM_006927, intron 2 of 6)	43595	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
194310	chr6	32822721	32822980	+	0	NA	intron (NM_018833, intron 11 of 11).8	intron (NM_018833, intron 11 of 11).8	-5848	NM_002120	3112		NM_002120	ENSG00000241106	HLA-DOB	DOB|HLA_DOB	major histocompatibility complex, class II, DO beta	protein-coding
226439	chr9	71647151	71647780	+	0	NA	Intergenic	Intergenic	121048	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
178007	chr4	139305671	139305830	+	0	NA	intron (NM_057175, intron 1 of 19)	AluSp|SINE|Alu	-3199	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
33625	chr10	119649301	119649500	+	0	NA	Intergenic	AluSz|SINE|Alu	-1980	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
186980	chr5	139699451	139699550	+	0	NA	Intergenic	Intergenic	24057	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
76573	chr15	75300051	75300150	+	0	NA	Intergenic	Intergenic	17259	NM_001145224	653643		NM_001145224	ENSG00000140478	GOLGA6D	-	golgin A6 family member D	protein-coding
41259	chr11	65833051	65834730	+	0	NA	promoter-TSS (NM_152760)	promoter-TSS (NM_152760)	-73	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
45251	chr11	117991651	117991750	+	0	NA	intron (NM_001558, intron 3 of 6)	L1MA7|LINE|L1	5306	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
179466	chr4	184462151	184462480	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	12235	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
119127	chr19	39365151	39365450	+	0	NA	intron (NM_001384588, intron 4 of 13)	AluSx|SINE|Alu	22879	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
53267	chr12	63752451	63752550	+	0	NA	Intergenic	Intergenic	-27409	NM_014254	10329		NM_014254	ENSG00000118600	RXYLT1	HP10481|MDDGA10|TMEM5	ribitol xylosyltransferase 1	protein-coding
137632	chr2	197369871	197370830	+	0	NA	Intergenic	MER50|LTR|ERV1	-59570	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
138424	chr2	205682121	205682650	+	0	NA	promoter-TSS (NM_201267)	promoter-TSS (NM_201267)	-115	NM_201264	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
195596	chr6	37558851	37559550	+	0	NA	Intergenic	L2a|LINE|L2	-3778	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
132755	chr2	109762271	109762430	+	0	NA	intron (NM_001384362, intron 2 of 22).2	intron (NM_001384362, intron 2 of 22).2	1678	NM_001384363	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
201423	chr6	146950521	146950780	+	0	NA	intron (NR_034115, intron 7 of 10)	MLT1C|LTR|ERVL-MaLR	-146826	NR_003954	729176		NR_003954		KATNBL1P6	-	katanin regulatory subunit B1 like 1 pseudogene 6	pseudo
79294	chr16	543101	543300	+	0	NA	promoter-TSS (NR_036137)	promoter-TSS (NR_036137)	-77	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
63806	chr14	21436851	21438230	+	0	NA	promoter-TSS (NM_020920)	promoter-TSS (NM_020920)	-265	NM_020920	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
105140	chr17	82240221	82240800	+	0	NA	TTS (NM_004207)	TTS (NM_004207)	3842	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
52571	chr12	56166271	56166650	+	0	NA	intron (NM_003075, intron 25 of 27)	intron (NM_003075, intron 25 of 27)	8101	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
174617	chr4	40297351	40297850	+	0	NA	Intergenic	Intergenic	-9585	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
205646	chr7	22728421	22728730	+	0	NA	promoter-TSS (NR_131935)	promoter-TSS (NR_131935)	-955	NR_131935	541472		NR_131935	ENSG00000179428	IL6-AS1	-	IL6 antisense RNA 1	ncRNA
433	chr1	1103851	1104550	+	0	NA	intron (NM_017891, intron 1 of 9)	AluSx3|SINE|Alu	11889	NM_017891	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
54142	chr12	76548501	76548700	+	0	NA	intron (NM_001319652, intron 1 of 25)	intron (NM_001319652, intron 1 of 25)	11171	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
28761	chr10	62029721	62030180	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-19407	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
209432	chr7	76381371	76382200	+	0	NA	Intergenic	AluSg|SINE|Alu	-15737	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
193202	chr6	29751601	29751800	+	0	NA	promoter-TSS (NR_001590)	promoter-TSS (NR_001590)	-552	NR_001590	340198		NR_001590	ENSG00000235821	IFITM4P	dJ377H14.5	interferon induced transmembrane protein 4 pseudogene	pseudo
129945	chr2	73851271	73851450	+	0	NA	intron (NR_148668, intron 7 of 12)	intron (NR_148668, intron 7 of 12)	22393	NM_006463	10617		NM_006463	ENSG00000124356	STAMBP	AMSH|MICCAP	STAM binding protein	protein-coding
19112	chr1	171496601	171497350	+	0	NA	intron (NM_015172, intron 1 of 33)	AluJb|SINE|Alu	11445	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
16542	chr1	154955901	154956980	+	0	NA	promoter-TSS (NM_020524)	promoter-TSS (NM_020524)	-341	NM_001317735	57326		NM_020524	ENSG00000163346	PBXIP1	HPIP	PBX homeobox interacting protein 1	protein-coding
23906	chr1	234986321	234986800	+	0	NA	Intergenic	LTR54|LTR|ERV1	-22561	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
61403	chr13	51645051	51647080	+	0	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	61603	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
168703	chr3	150635221	150636280	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	32429	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
94117	chr17	28057671	28058030	+	0	NA	intron (NM_016231, intron 1 of 10)	intron (NM_016231, intron 1 of 10)	15173	NM_016231	51701		NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding
216453	chr8	19530871	19531250	+	0	NA	intron (NM_001354497, intron 1 of 7)	intron (NM_001354497, intron 1 of 7)	71485	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
171031	chr3	195150251	195150950	+	0	NA	intron (NR_102711, intron 1 of 1)	intron (NR_102711, intron 1 of 1)	2729	NR_102711	101410543		NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
165788	chr3	105794551	105794850	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	72891	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
52620	chr12	56263051	56263780	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3527	NM_144576	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
195568	chr6	37496771	37497330	+	0	NA	intron (NM_138493, intron 1 of 3)	intron (NM_138493, intron 1 of 3)	2843	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
171304	chr3	195957051	195957930	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	32789	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
210348	chr7	99556951	99557330	+	0	NA	Intergenic	Intergenic	-1282	NM_024061	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
3967	chr1	18681401	18681600	+	0	NA	intron (NM_001135254, intron 4 of 8)	intron (NM_001135254, intron 4 of 8)	50654	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
179498	chr4	184643451	184643980	+	0	NA	intron (NM_032991, intron 1 of 6)	intron (NM_032991, intron 1 of 6)	5732	NM_004346	836		NM_004346	ENSG00000164305	CASP3	CPP32|CPP32B|SCA-1	caspase 3	protein-coding
20628	chr1	199163571	199163930	+	0	NA	intron (NR_147896, intron 3 of 3)	MIRc|SINE|MIR	15152	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
188677	chr5	157271271	157272800	+	0	NA	intron (NM_014376, intron 1 of 30)	intron (NM_014376, intron 1 of 30)	2711	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
62435	chr13	99319521	99319980	+	0	NA	intron (NR_026644, intron 6 of 8)	intron (NR_026644, intron 6 of 8)	-12351	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
130759	chr2	86817721	86818300	+	0	NA	intron (NM_001178100, intron 3 of 3)	AluSx1|SINE|Alu	-9614	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
200757	chr6	137817851	137817950	+	0	NA	Intergenic	Intergenic	-49359	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
127491	chr2	42255801	42256130	+	0	NA	intron (NM_019063, intron 2 of 22)	intron (NM_019063, intron 2 of 22)	-85734	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
7292	chr1	32393971	32395380	+	0	NA	promoter-TSS (NM_001143888)	promoter-TSS (NM_001143888)	-234	NM_001143889	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
38699	chr11	46616621	46618350	+	0	NA	promoter-TSS (NM_001346311)	promoter-TSS (NM_001346311)	-68	NM_001346311	9776		NM_014741	ENSG00000175224	ATG13	KIAA0652|PARATARG8	autophagy related 13	protein-coding
127760	chr2	43998121	43998580	+	0	NA	Intergenic	L2a|LINE|L2	-2361	NM_133259	10128		NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC|MC4DN5	leucine rich pentatricopeptide repeat containing	protein-coding
159983	chr3	18208971	18209130	+	0	NA	intron (NR_161333, intron 4 of 4)	intron (NR_161333, intron 4 of 4)	216289	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
16054	chr1	153223021	153223280	+	0	NA	Intergenic	Intergenic	5566	NM_001195571	574414		NM_001195571	ENSG00000203783	PRR9	-	proline rich 9	protein-coding
86666	chr16	67478451	67479230	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	2317	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
32297	chr10	102139621	102141380	+	0	NA	exon (NM_001288727, exon 5 of 12)	exon (NM_001288727, exon 5 of 12)	7460	NM_015062	23082		NM_015062	ENSG00000148840	PPRC1	PRC	PPARG related coactivator 1	protein-coding
159212	chr3	12895471	12895630	+	0	NA	Intergenic	L2|LINE|L2	-10339	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
119292	chr19	39822471	39823030	+	0	NA	Intergenic	L2a|LINE|L2	7052	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
233665	chrX	1054221	1054880	+	0	NA	Intergenic	AluSx|SINE|Alu	158099	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
177800	chr4	123400101	123400300	+	0	NA	intron (NM_005841, intron 1 of 1)	intron (NM_005841, intron 1 of 1)	660	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
48271	chr12	8692651	8692950	+	0	NA	intron (NM_001352267, intron 1 of 5)	intron (NM_001352267, intron 1 of 5)	-4383	NM_001352268	57494		NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding
233801	chrX	1452101	1453400	+	0	NA	exon (NM_004192, exon 1 of 13).2	exon (NM_004192, exon 1 of 13).2	159	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
18529	chr1	161935221	161935500	+	0	NA	intron (NM_007348, intron 15 of 15)	MLT1A0|LTR|ERVL-MaLR	89105	NM_001347700	25903		NM_015441	ENSG00000162745	OLFML2B	-	olfactomedin like 2B	protein-coding
136225	chr2	174590771	174591200	+	0	NA	intron (NM_001077269, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	6819	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
88574	chr16	85562921	85563380	+	0	NA	Intergenic	Intergenic	-48259	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
11650	chr1	91800001	91800400	+	0	NA	intron (NM_003243, intron 2 of 16)	AluJb|SINE|Alu	85951	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
181779	chr5	50748121	50748750	+	0	NA	intron (NM_024615, intron 2 of 25)	L1MEf|LINE|L1	81021	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
214906	chr7	151447901	151449100	+	0	NA	Intergenic	CpG	-7687	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
93902	chr17	21249351	21250430	+	0	NA	intron (NM_152914, intron 1 of 2)	intron (NM_152914, intron 1 of 2)	3520	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
190535	chr5	180658971	180659330	+	0	NA	Intergenic	Intergenic	-9550	NM_002020	2324		NM_002020	ENSG00000037280	FLT4	CHTD7|FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3	fms related receptor tyrosine kinase 4	protein-coding
5432	chr1	25566521	25567280	+	0	NA	exon (NM_015627, exon 9 of 9)	exon (NM_015627, exon 9 of 9)	23294	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
33272	chr10	114522951	114523350	+	0	NA	intron (NM_001322883, intron 6 of 20)	AluSz|SINE|Alu	3763	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
169395	chr3	160562321	160562730	+	0	NA	intron (NM_002268, intron 1 of 16)	intron (NM_002268, intron 1 of 16)	3046	NM_002268	3840		NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
168604	chr3	149277351	149277930	+	0	NA	Intergenic	L2c|LINE|L2	55798	NM_001184723	116441		NM_138786	ENSG00000163762	TM4SF18	L6D	transmembrane 4 L six family member 18	protein-coding
89357	chr16	88770771	88771800	+	0	NA	intron (NM_001142864, intron 1 of 50)	MIRc|SINE|MIR	13935	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
77950	chr15	89358421	89359800	+	0	NA	Intergenic	CpG	-2469	NR_133001	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
93371	chr17	18243601	18244480	+	0	NA	TTS (NM_002018)	TTS (NM_002018)	14698	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
224187	chr9	5424871	5425330	+	0	NA	intron (NM_018465, intron 3 of 5)	intron (NM_018465, intron 3 of 5)	12825	NM_018465	55848		NM_018465	ENSG00000107020	PLGRKT	AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT)	plasminogen receptor with a C-terminal lysine	protein-coding
114150	chr19	11336951	11337650	+	0	NA	exon (NM_004283, exon 2 of 5)	exon (NM_004283, exon 2 of 5)	2357	NM_004283	9545		NM_004283	ENSG00000105514	RAB3D	D2-2|GOV|RAB16|RAD3D	RAB3D, member RAS oncogene family	protein-coding
218178	chr8	41972471	41972630	+	0	NA	intron (NM_001305878, intron 8 of 13)	L1MC4|LINE|L1	-75809	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
214656	chr7	150876871	150877750	+	0	NA	Intergenic	Intergenic	24793	NM_001091	26		NM_001091	ENSG00000002726	AOC1	ABP|ABP1|DAO|DAO1|KAO|KDAO	amine oxidase copper containing 1	protein-coding
62957	chr13	112283321	112283930	+	0	NA	Intergenic	Intergenic	-10625	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
108447	chr18	70175751	70175850	+	0	NA	intron (NM_173630, intron 11 of 48)	intron (NM_173630, intron 11 of 48)	29887	NM_001318520	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
238449	chrX	152830531	152831630	+	0	NA	promoter-TSS (NM_004344)	promoter-TSS (NM_004344)	17	NM_015922	50814		NM_015922	ENSG00000147383	NSDHL	H105E3|SDR31E1|XAP104	NAD(P) dependent steroid dehydrogenase-like	protein-coding
5765	chr1	26491371	26491730	+	0	NA	Intergenic	AluSz|SINE|Alu	19110	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
51137	chr12	50117171	50117330	+	0	NA	intron (NM_001257134, intron 1 of 1)	AluJr|SINE|Alu	5014	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
164014	chr3	53192671	53193230	+	0	NA	TTS (NM_001354678)	TTS (NM_001354678)	24247	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
168954	chr3	152376751	152377650	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-36210	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
127517	chr2	42306201	42306800	+	0	NA	intron (NM_019063, intron 17 of 22)	AluY|SINE|Alu	53538	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
162885	chr3	49382151	49382980	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluJb|SINE|Alu	-23965	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
174361	chr4	38807371	38807530	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-2659	NM_003263	7096		NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll like receptor 1	protein-coding
62532	chr13	99565851	99566150	+	0	NA	Intergenic	Intergenic	-11112	NR_126390	104355149		NR_126390		LINC01039	-	long intergenic non-protein coding RNA 1039	ncRNA
140147	chr2	231599901	231600100	+	0	NA	Intergenic	AluSz|SINE|Alu	7136	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
162331	chr3	47578801	47580400	+	0	NA	promoter-TSS (NM_001206943)	promoter-TSS (NM_001206943)	640	NM_001206942	10675		NM_006574	ENSG00000114646	CSPG5	NGC	chondroitin sulfate proteoglycan 5	protein-coding
61136	chr13	48580001	48580780	+	0	NA	intron (NR_051983, intron 1 of 2)	intron (NR_051983, intron 1 of 2)	511	NR_051983	100129597		NR_051983	ENSG00000233610	LINC00462	-	long intergenic non-protein coding RNA 462	ncRNA
130512	chr2	85600571	85600750	+	0	NA	intron (NM_001369917, intron 3 of 6)	intron (NM_001369917, intron 3 of 6)	1734	NM_001369917	129303		NM_153342	ENSG00000168890	TMEM150A	TM6P1|TMEM150|TTN1	transmembrane protein 150A	protein-coding
162004	chr3	46403921	46404180	+	0	NA	intron (NR_125406, intron 1 of 3)	LTR41C|LTR|ERVL	3009	NR_125406	102724297		NR_125406	ENSG00000223552	CCR5AS	-	CCR5 antisense RNA	ncRNA
52956	chr12	57464051	57464950	+	0	NA	intron (NM_005269, intron 3 of 11)	AluSz|SINE|Alu	4349	NM_001167609	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
216025	chr8	9148321	9148580	+	0	NA	intron (NM_001201329, intron 1 of 1).2	intron (NM_001201329, intron 1 of 1).2	2208	NM_024607	79660		NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
16445	chr1	154577001	154577280	+	0	NA	3' UTR (NM_000748, exon 6 of 6)	3' UTR (NM_000748, exon 6 of 6)	9362	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
5650	chr1	26283621	26283950	+	0	NA	intron (NM_145345, intron 12 of 14)	intron (NM_145345, intron 12 of 14)	3699	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
168260	chr3	141434201	141434400	+	0	NA	intron (NM_001350099, intron 4 of 5)	intron (NM_001350099, intron 4 of 5)	31286	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
14728	chr1	145981071	145982050	+	0	NA	Intergenic	AluJr|SINE|Alu	14184	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
187179	chr5	140644951	140645600	+	0	NA	TTS (NM_001185012)	TTS (NM_001185012)	2355	NM_002488	4695		NM_002488	ENSG00000131495	NDUFA2	B8|CD14|CIB8|MC1DN13	NADH:ubiquinone oxidoreductase subunit A2	protein-coding
226294	chr9	68342401	68342880	+	0	NA	Intergenic	Intergenic	-13971	NM_021965	5239		NM_021965	ENSG00000154330	PGM5	PGMRP	phosphoglucomutase 5	protein-coding
89219	chr16	88623621	88624230	+	0	NA	intron (NM_144604, intron 10 of 17)	intron (NM_144604, intron 10 of 17)	-14647	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
153708	chr22	29279921	29280330	+	0	NA	intron (NM_001163286, intron 5 of 15)	AluSz|SINE|Alu	11857	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
178198	chr4	142406901	142408780	+	0	NA	intron (NM_001385334, intron 4 of 24)	MIRb|SINE|MIR	-1981	NR_169599	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
155032	chr22	37474571	37474730	+	0	NA	exon (NM_002405, exon 6 of 8)	exon (NM_002405, exon 6 of 8)	11734	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
212916	chr7	130908021	130908480	+	0	NA	intron (NR_110472, intron 2 of 3)	AluYm1|SINE|Alu	5060	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
28053	chr10	43263051	43263150	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	3965	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
185262	chr5	123572001	123572400	+	0	NA	intron (NM_001364143, intron 4 of 11)	MER65A|LTR|ERV1	26783	NM_001044723	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
139999	chr2	230949771	230950550	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-24918	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
127203	chr2	38571051	38571550	+	0	NA	intron (NM_138394, intron 8 of 12)	MER44A|DNA|TcMar-Tigger	31628	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
209997	chr7	92881251	92881350	+	0	NA	intron (NR_110087, intron 2 of 2)	L1MA7|LINE|L1	-44727	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
211443	chr7	105073101	105073300	+	0	NA	intron (NM_182931, intron 6 of 26)	AluJb|SINE|Alu	58995	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
126097	chr2	25852951	25853650	+	0	NA	intron (NM_018263, intron 1 of 11)	intron (NM_018263, intron 1 of 11)	-22399	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
113880	chr19	10670021	10670480	+	0	NA	intron (NM_153464, intron 1 of 17)	intron (NM_153464, intron 1 of 17)	15904	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
77626	chr15	85410771	85411130	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	30347	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
109147	chr18	80257001	80257200	+	0	NA	Intergenic	Intergenic	-9586	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
239149	chrY	11328271	11328850	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1093030	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
36613	chr11	6755051	6755580	+	0	NA	Intergenic	Intergenic	13642	NM_001004490	338755		NM_001004490	ENSG00000188124	OR2AG2	OR11-76|OR2AG2P	olfactory receptor family 2 subfamily AG member 2	protein-coding
152146	chr22	19988371	19988800	+	0	NA	intron (NM_001670, intron 3 of 19)	intron (NM_001670, intron 3 of 19)	24832	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
48470	chr12	9762451	9762550	+	0	NA	Intergenic	L2b|LINE|L2	-1599	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
94777	chr17	30960921	30961450	+	0	NA	Intergenic	L1ME1|LINE|L1	-9854	NM_197939	84282		NM_032322	ENSG00000181481	RNF135	L13|MMFD|REUL|Riplet	ring finger protein 135	protein-coding
219478	chr8	73741101	73741300	+	0	NA	intron (NM_001164380, intron 1 of 14)	AluYh3|SINE|Alu	5640	NM_001164380	27067		NM_014393	ENSG00000040341	STAU2	39K2|39K3	staufen double-stranded RNA binding protein 2	protein-coding
182077	chr5	55984751	55984850	+	0	NA	intron (NR_157112, intron 1 of 17)	Tigger4a|DNA|TcMar-Tigger	10163	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
27884	chr10	41870571	41871280	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	497120	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
11926	chr1	93629451	93629800	+	0	NA	intron (NM_001261409, intron 3 of 11)	intron (NM_001261409, intron 3 of 11)	-15528	NM_001261410	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
2822	chr1	11037571	11038230	+	0	NA	intron (NM_006610, intron 6 of 10)	intron (NM_006610, intron 6 of 10)	9339	NM_139208	10747		NM_006610	ENSG00000009724	MASP2	MAP-2|MAP19|MASP-2|MASP1P1|sMAP	MBL associated serine protease 2	protein-coding
74356	chr15	58690101	58690300	+	0	NA	TTS (NR_073415)	TTS (NR_073415)	3407	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
188721	chr5	157344221	157345230	+	0	NA	intron (NM_001001343, intron 1 of 1)	intron (NM_001001343, intron 1 of 1)	952	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
220563	chr8	100720651	100721500	+	0	NA	intron (NM_002568, intron 1 of 14)	CpG	1013	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
79743	chr16	1339721	1340530	+	0	NA	intron (NM_001199097, intron 5 of 33)	intron (NM_001199097, intron 5 of 33)	3928	NM_001199096	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
39980	chr11	62610771	62610930	+	0	NA	intron (NM_153265, intron 4 of 21)	intron (NM_153265, intron 4 of 21)	1925	NM_153265	256364		NM_153265	ENSG00000149499	EML3	ELP95|EMAP3|EMAP95	EMAP like 3	protein-coding
239092	chrY	10472221	10472480	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	561552	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
215626	chr7	159335151	159335960	+	0	NA	Intergenic	TAR1|Satellite|telo	-190598	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
141938	chr20	1264901	1265400	+	0	NA	Intergenic	L2a|LINE|L2	-1144	NM_014723	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
121160	chr19	46393751	46393850	+	0	NA	Intergenic	Intergenic	19764	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
191267	chr6	6044921	6045180	+	0	NA	Intergenic	Intergenic	-37445	NM_001278710	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
148377	chr20	63891651	63892430	+	0	NA	TTS (NM_001243895)	TTS (NM_001243895)	-3086	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
7614	chr1	35452021	35452380	+	0	NA	intron (NM_024874, intron 12 of 20)	intron (NM_024874, intron 12 of 20)	-86123	NR_046659	100861513		NR_046659	ENSG00000227409	ZMYM4-AS1	-	ZMYM4 antisense RNA 1	ncRNA
14183	chr1	121530171	121530730	+	0	NA	intron (NR_003955, intron 1 of 7)	GA-rich|Low_complexity|Low_complexity	11338	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
115120	chr19	14361521	14362230	+	0	NA	intron (NR_134908, intron 1 of 3)	AluSx|SINE|Alu	2115	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
221666	chr8	125971451	125972750	+	0	NA	Intergenic	MER66D|LTR|ERV1	-20903	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
40439	chr11	64201221	64201480	+	0	NA	intron (NM_001282653, intron 10 of 13)	L1M3|LINE|L1	-4570	NM_001382448	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
223857	chr9	105701	106330	+	0	NA	Intergenic	SATR1|Satellite|Satellite	12402	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
15700	chr1	150997971	150998530	+	0	NA	exon (NM_001376664, exon 8 of 10)	exon (NM_001376664, exon 8 of 10)	8652	NM_001040217	55793		NM_018379	ENSG00000143409	MINDY1	FAM63A|MINDY-1	MINDY lysine 48 deubiquitinase 1	protein-coding
24731	chr1	247936921	247937600	+	0	NA	5' UTR (NM_001304535, exon 1 of 2)	5' UTR (NM_001304535, exon 1 of 2)	231	NM_175911	284521		NM_175911	ENSG00000196071	OR2L13	OR2L14	olfactory receptor family 2 subfamily L member 13	protein-coding
147045	chr20	53655021	53655480	+	0	NA	Intergenic	Intergenic	46896	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
85235	chr16	48243801	48245230	+	0	NA	promoter-TSS (NM_032583)	promoter-TSS (NM_032583)	73	NM_145186	85320		NM_032583	ENSG00000121270	ABCC11	EWWD|MRP8|WW	ATP binding cassette subfamily C member 11	protein-coding
169672	chr3	171763451	171763550	+	0	NA	intron (NM_001130081, intron 1 of 25)	(GGAGG)n|Simple_repeat|Simple_repeat	46983	NM_001130081	5337		NM_002662	ENSG00000075651	PLD1	CVDD|CVDP1	phospholipase D1	protein-coding
78349	chr15	91258571	91258730	+	0	NA	intron (NM_001167580, intron 4 of 11)	intron (NM_001167580, intron 4 of 11)	156854	NM_001323039	9899		NM_014848	ENSG00000185518	SV2B	HsT19680|SLC22B2	synaptic vesicle glycoprotein 2B	protein-coding
197615	chr6	82281421	82281930	+	0	NA	Intergenic	L1PA7|LINE|L1	-33931	NM_015525	25998		NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI	inhibitor of Bruton tyrosine kinase	protein-coding
172607	chr4	2503801	2504100	+	0	NA	intron (NM_001185009, intron 5 of 8)	intron (NM_001185009, intron 5 of 8)	-31425	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
7951	chr1	37557471	37557650	+	0	NA	intron (NM_003462, intron 1 of 5)	intron (NM_003462, intron 1 of 5)	620	NM_003462	7802		NM_003462	ENSG00000163879	DNALI1	P28|SPGF83|dJ423B22.5|hp28	dynein axonemal light intermediate chain 1	protein-coding
57829	chr12	123236301	123237030	+	0	NA	intron (NM_001194995, intron 1 of 2)	intron (NM_001194995, intron 1 of 2)	2921	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
200328	chr6	133894601	133895250	+	0	NA	3' UTR (NM_198392, exon 3 of 3)	3' UTR (NM_198392, exon 3 of 3)	5812	NM_198392	6943		NM_003206	ENSG00000118526	TCF21	POD1|bHLHa23	transcription factor 21	protein-coding
158521	chr3	3166101	3166300	+	0	NA	intron (NM_016302, intron 5 of 10)	THE1B|LTR|ERVL-MaLR	13491	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
33124	chr10	112307871	112308130	+	0	NA	TTS (NR_028134)	TTS (NR_028134)	-8312	NR_106772	102465427		NR_106772	ENSG00000283688	MIR6715B	hsa-mir-6715b	microRNA 6715b	ncRNA
53807	chr12	69247821	69248430	+	0	NA	intron (NM_001300947, intron 1 of 10)	intron (NM_001300947, intron 1 of 10)	8556	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
74891	chr15	63595701	63596300	+	0	NA	intron (NR_034080, intron 1 of 2)	intron (NR_034080, intron 1 of 2)	-1387	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
56583	chr12	117212601	117212900	+	0	NA	3' UTR (NM_001204218, exon 30 of 30)	3' UTR (NM_001204218, exon 30 of 30)	-22280	NM_033624	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
74405	chr15	58957251	58957930	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-23911	NR_135042	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
92428	chr17	8435251	8436950	+	0	NA	intron (NM_001025579, intron 1 of 9)	CpG	216	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
95282	chr17	35517671	35517830	+	0	NA	intron (NM_001363830, intron 2 of 4)	L1PA8|LINE|L1	20111	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
197488	chr6	75605921	75606680	+	0	NA	intron (NM_015571, intron 1 of 23)	intron (NM_015571, intron 1 of 23)	4420	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
141074	chr2	238282821	238283080	+	0	NA	intron (NM_022817, intron 1 of 22)	LTR16D|LTR|ERVL	5660	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
184040	chr5	91374501	91374750	+	0	NA	intron (NR_138071, intron 5 of 7)	AluJb|SINE|Alu	5472	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
19772	chr1	182136001	182136200	+	0	NA	Intergenic	Intergenic	-74388	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
172957	chr4	3620271	3620630	+	0	NA	Intergenic	MER51A|LTR|ERV1	43581	NR_040045	285492		NM_173661		LINC00955	-	long intergenic non-protein coding RNA 955	ncRNA
192300	chr6	21102121	21102380	+	0	NA	intron (NM_017774, intron 12 of 15)	intron (NM_017774, intron 12 of 15)	409642	NR_103790	100874531		NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
41317	chr11	65893131	65894530	+	0	NA	intron (NM_001300857, intron 1 of 1)	intron (NM_001300857, intron 1 of 1)	3157	NM_006848	11007		NM_006848	ENSG00000175602	CCDC85B	DIPA	coiled-coil domain containing 85B	protein-coding
35381	chr11	1306401	1306780	+	0	NA	intron (NM_001318516, intron 1 of 4)	intron (NM_001318516, intron 1 of 4)	3042	NM_001318515	54472		NM_019009	ENSG00000078902	TOLLIP	IL-1RAcPIP	toll interacting protein	protein-coding
31389	chr10	94543401	94544130	+	0	NA	Intergenic	LTR39|LTR|ERV1	-2002	NM_001289067	3070		NM_018063	ENSG00000119969	HELLS	ICF4|LSH|Nbla10143|PASG|SALNR|SMARCA6	helicase, lymphoid specific	protein-coding
63266	chr13	113955471	113955800	+	0	NA	3' UTR (NM_001365455, exon 7 of 7)	3' UTR (NM_001365455, exon 7 of 7)	18441	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
221698	chr8	127086101	127086500	+	0	NA	non-coding (NR_109833, exon 1 of 1)	non-coding (NR_109833, exon 1 of 1)	-4079	NR_119373	103164619		NR_119373	ENSG00000254166	PCAT2	CARLO4|CARLo-4|PCA2|TCONS_00015167	prostate cancer associated transcript 2	ncRNA
74198	chr15	55894451	55894550	+	0	NA	intron (NM_006154, intron 5 of 28)	intron (NM_006154, intron 5 of 28)	22631	NM_001284340	4734		NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	NEDD4 E3 ubiquitin protein ligase	protein-coding
134828	chr2	148558051	148558150	+	0	NA	Intergenic	LTR33|LTR|ERVL	-86651	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
148520	chr20	64093971	64094800	+	0	NA	intron (NM_001318855, intron 1 of 2)	intron (NM_001318855, intron 1 of 2)	1697	NM_001318854	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
228495	chr9	100084771	100085630	+	0	NA	intron (NM_015051, intron 1 of 11)	intron (NM_015051, intron 1 of 11)	13800	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
67984	chr14	74911701	74912750	+	0	NA	intron (NR_163406, intron 3 of 11)	intron (NR_163406, intron 3 of 11)	10217	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
72581	chr15	34946571	34946900	+	0	NA	intron (NM_014691, intron 5 of 34)	SVA_D|Retroposon|SVA	23007	NM_014691	9716		NM_014691	ENSG00000021776	AQR	IBP160|fSAP164	aquarius intron-binding spliceosomal factor	protein-coding
13492	chr1	114722371	114722630	+	0	NA	intron (NM_001242891, intron 17 of 20)	intron (NM_001242891, intron 17 of 20)	-5729	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
236526	chrX	72104171	72104330	+	0	NA	intron (NM_001013627, intron 1 of 7)	Charlie4a|DNA|hAT-Charlie	27665	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
120637	chr19	45068271	45069330	+	0	NA	intron (NM_001278439, intron 15 of 19)	AluY|SINE|Alu	-6827	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
45450	chr11	118448071	118448730	+	0	NA	intron (NM_001197104, intron 1 of 35)	intron (NM_001197104, intron 1 of 35)	11908	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
201055	chr6	142355671	142356430	+	0	NA	intron (NM_001032394, intron 2 of 24)	intron (NM_001032394, intron 2 of 24)	54043	NM_198569	57211		NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
25073	chr10	3828371	3829700	+	0	NA	Intergenic	Intergenic	-4915	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
76322	chr15	74396371	74396950	+	0	NA	Intergenic	Intergenic	14772	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
183508	chr5	79517101	79517300	+	0	NA	Intergenic	Intergenic	-3066	NM_004272	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
12477	chr1	107920021	107920280	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	22927	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
208132	chr7	62454751	62454850	+	0	NA	Intergenic	Intergenic	849256	NR_003952	643955		NR_003952	ENSG00000290558	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
222131	chr8	132128801	132129200	+	0	NA	3' UTR (NM_001204824, exon 15 of 15)	3' UTR (NM_001204824, exon 15 of 15)	-23735	NM_001145095	10086		NM_005712	ENSG00000132297	HHLA1	PLA2L	HHLA1 neighbor of OC90	protein-coding
189259	chr5	172048201	172048400	+	0	NA	intron (NM_005990, intron 18 of 18)	MLT2D|LTR|ERVL	-41662	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
96411	chr17	40159621	40159880	+	0	NA	intron (NM_007359, intron 3 of 13)	AluSz|SINE|Alu	-2183	NR_106926	102466986		NR_106926	ENSG00000284144	MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
157226	chr22	43255321	43255980	+	0	NA	intron (NM_173050, intron 6 of 21)	intron (NM_173050, intron 6 of 21)	-20292	NR_134582	101927447		NR_134582	ENSG00000203527	SCUBE1-AS1	-	SCUBE1 antisense RNA 1	ncRNA
199718	chr6	125388251	125389230	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-86773	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
25286	chr10	6150551	6151620	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-1111	NR_036111	100422989		NR_036111	ENSG00000263628	MIR3155A	MIR3155|hsa-mir-3155a|mir-3155a	microRNA 3155a	ncRNA
118427	chr19	35790651	35791600	+	0	NA	non-coding (NR_104176, exon 3 of 8)	non-coding (NR_104176, exon 3 of 8)	6784	NR_104176	644050		NR_104176	ENSG00000293484	LINC01529	-	long intergenic non-protein coding RNA 1529	ncRNA
139124	chr2	218988901	218989380	+	0	NA	Intergenic	Intergenic	-3956	NM_017521	54738		NM_017521	ENSG00000163497	FEV	HSRNAFEV|PET-1	FEV transcription factor, ETS family member	protein-coding
204985	chr7	6410151	6410450	+	0	NA	exon (NM_001142936, exon 12 of 13)	exon (NM_001142936, exon 12 of 13)	35773	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
143406	chr20	29410771	29410930	+	0	NA	Intergenic	CpG	6111	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
214802	chr7	151174721	151175180	+	0	NA	TTS (NM_001142459)	TTS (NM_001142459)	-7402	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
178166	chr4	142367701	142368080	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	35243	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
1410	chr1	2561251	2561350	+	0	NA	intron (NM_001297605, intron 5 of 6)	intron (NM_001297605, intron 5 of 6)	-4289	NR_037844	115110		NR_026927		TNFRSF14-AS1	-	TNFRSF14 antisense RNA 1	ncRNA
193028	chr6	28425921	28426380	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	17341	NM_001012455	222696		NM_001012455	ENSG00000187987	ZSCAN23	ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1	zinc finger and SCAN domain containing 23	protein-coding
43146	chr11	75312451	75312550	+	0	NA	intron (NM_020251, intron 1 of 14)	MIRb|SINE|MIR	22686	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
86681	chr16	67515371	67515530	+	0	NA	Intergenic	AluSq|SINE|Alu	13295	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
106340	chr18	13052021	13052280	+	0	NA	intron (NM_032142, intron 17 of 44)	MLT1G3|LTR|ERVL-MaLR	60788	NM_032142	55125		NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
207470	chr7	44618501	44619680	+	0	NA	intron (NM_001363523, intron 1 of 23)	MER21A|LTR|ERVL	12463	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
191139	chr6	4134961	4136850	+	0	NA	promoter-TSS (NR_103764)	promoter-TSS (NR_103764)	-167	NR_103764	100507506		NR_103764	ENSG00000234817	ECI2-DT	-	ECI2 divergent transcript	ncRNA
233815	chrX	1473101	1473300	+	0	NA	intron (NM_178129, intron 1 of 1)	(GATG)n|Simple_repeat|Simple_repeat	-19438	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
106875	chr18	24271701	24272050	+	0	NA	5' UTR (NM_018030, exon 1 of 14)	5' UTR (NM_018030, exon 1 of 14)	357	NM_018030	114876		NM_018030	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein like 1A	protein-coding
58507	chr12	132175201	132175430	+	0	NA	Intergenic	Intergenic	14380	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
231362	chr9	130660701	130661200	+	0	NA	Intergenic	CpG	-3644	NM_021619	59335		NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding
70164	chr14	100311051	100311630	+	0	NA	Intergenic	AluJb|SINE|Alu	3481	NR_029906	442910		NR_029906	ENSG00000198984	MIR345	MIRN345|hsa-mir-345|mir-345	microRNA 345	ncRNA
190806	chr6	1384101	1384780	+	0	NA	Intergenic	CpG	-5136	NM_001452	2295		NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
48063	chr12	7107871	7108800	+	0	NA	promoter-TSS (NR_026947)	promoter-TSS (NR_026947)	27	NR_026947	283314		NR_026947	ENSG00000205885	C1RL-AS1	MATL2963	C1RL antisense RNA 1	ncRNA
164335	chr3	57967571	57967930	+	0	NA	Intergenic	MER50|LTR|ERV1	-40672	NM_001164317	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
91444	chr17	4784201	4784550	+	0	NA	TTS (NM_182566)	TTS (NM_182566)	1989	NM_001144940	284013		NM_182566	ENSG00000182853	VMO1	ERGA6350|PRO21055	vitelline membrane outer layer 1 homolog	protein-coding
73045	chr15	40878701	40879050	+	0	NA	Intergenic	Intergenic	-4641	NM_133639	171177		NM_133639	ENSG00000104140	RHOV	ARHV|CHP|WRCH2	ras homolog family member V	protein-coding
152179	chr22	20094151	20094530	+	0	NA	intron (NM_022720, intron 8 of 13)	intron (NM_022720, intron 8 of 13)	8282	NR_031706	100302197		NR_031706	ENSG00000284464	MIR1306	MIRN1306|hsa-mir-1306|mir-1306	microRNA 1306	ncRNA
172365	chr4	1745301	1745600	+	0	NA	TTS (NM_006342)	TTS (NM_006342)	23929	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
9781	chr1	53541801	53542050	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	82526	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
60416	chr13	40977301	40977530	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	4867	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
226788	chr9	76658421	76658930	+	0	NA	intron (NM_001308047, intron 9 of 17)	intron (NM_001308047, intron 9 of 17)	33740	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
1365	chr1	2507701	2508680	+	0	NA	TTS (NM_018216).2	TTS (NM_018216).2	18406	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
170063	chr3	182877301	182877700	+	0	NA	intron (NM_014616, intron 19 of 29)	AluJb|SINE|Alu	83996	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
239176	chrY	12490621	12491300	+	0	NA	Intergenic	Intergenic	-69370	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
96150	chr17	39677751	39678280	+	0	NA	intron (NM_001291726, intron 2 of 6)	intron (NM_001291726, intron 2 of 6)	9562	NM_002686	5409		NM_002686	ENSG00000141744	PNMT	PENT|PNMTase	phenylethanolamine N-methyltransferase	protein-coding
22642	chr1	223721071	223721700	+	0	NA	intron (NM_001748, intron 2 of 20)	intron (NM_001748, intron 2 of 20)	8846	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
139670	chr2	226953951	226954050	+	0	NA	intron (NM_001349069, intron 8 of 8)	intron (NM_001349069, intron 8 of 8)	117946	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
114232	chr19	11484971	11485130	+	0	NA	intron (NM_138783, intron 7 of 8)	AluSx1|SINE|Alu	-4004	NM_001420	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
184454	chr5	100430321	100430580	+	0	NA	Intergenic	LTR50|LTR|ERVL	-42196	NR_027503	100133050		NR_027503		GUSBP19	-	GUSB pseudogene 19	pseudo
125308	chr2	10668521	10669280	+	0	NA	intron (NM_024894, intron 6 of 20)	intron (NM_024894, intron 6 of 20)	21075	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
19434	chr1	174324921	174325180	+	0	NA	intron (NM_001366447, intron 11 of 20)	intron (NM_001366447, intron 11 of 20)	49950	NM_001366449	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
223678	chr8	144401971	144402130	+	0	NA	intron (NM_013291, intron 2 of 37)	intron (NM_013291, intron 2 of 37)	-1705	NR_106908	102466749		NR_106908	ENSG00000283770	MIR6849	hsa-mir-6849	microRNA 6849	ncRNA
18200	chr1	160861851	160863430	+	0	NA	exon (NM_016382, exon 1 of 9)	exon (NM_016382, exon 1 of 9)	247	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
133583	chr2	121648001	121651230	+	0	NA	promoter-TSS (NR_037857)	promoter-TSS (NR_037857)	-39	NR_037857	254128		NR_037856	ENSG00000236859	NIFK-AS1	-	NIFK antisense RNA 1	ncRNA
128383	chr2	55036971	55037330	+	0	NA	intron (NM_001321904, intron 2 of 9)	L1ME2|LINE|L1	10176	NM_001321863	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
143094	chr20	23187771	23187930	+	0	NA	Intergenic	Intergenic	-55214	NR_034149	200261		NM_182535	ENSG00000233746	LINC00656	-	long intergenic non-protein coding RNA 656	ncRNA
2572	chr1	9796421	9796680	+	0	NA	intron (NM_014944, intron 1 of 17)	AluY|SINE|Alu	27415	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
217859	chr8	37803851	37804680	+	0	NA	intron (NM_032777, intron 1 of 18)	intron (NM_032777, intron 1 of 18)	7382	NM_032777	25960		NM_032777	ENSG00000020181	ADGRA2	GPR124|TEM5	adhesion G protein-coupled receptor A2	protein-coding
113752	chr19	10501951	10504200	+	0	NA	promoter-TSS (NM_012289)	promoter-TSS (NM_012289)	281	NM_203500	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
31187	chr10	91198401	91199300	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-21301	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
45111	chr11	117132951	117133250	+	0	NA	Intergenic	AluY|SINE|Alu	-11184	NM_001184748	5049		NM_002572	ENSG00000168092	PAFAH1B2	HEL-S-303	platelet activating factor acetylhydrolase 1b catalytic subunit 2	protein-coding
41119	chr11	65557671	65560150	+	0	NA	promoter-TSS (NM_001164266)	promoter-TSS (NM_001164266)	-551	NM_001130144	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
10511	chr1	66788301	66788780	+	0	NA	Intergenic	Intergenic	12736	NM_005478	10022		NM_005478	ENSG00000172410	INSL5	PRO182|UNQ156	insulin like 5	protein-coding
65372	chr14	50560151	50561450	+	0	NA	intron (NM_181598, intron 1 of 12)	CpG	655	NM_015915	51062		NM_015915	ENSG00000198513	ATL1	AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1	atlastin GTPase 1	protein-coding
157077	chr22	42608121	42608380	+	0	NA	intron (NM_001278657, intron 1 of 8)	SVA_B|Retroposon|SVA	6633	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
121313	chr19	46749601	46750480	+	0	NA	intron (NM_001039885, intron 3 of 3)	MIR|SINE|MIR	-3590	NM_013403	29888		NM_013403	ENSG00000090372	STRN4	PPP2R6C|ZIN|zinedin	striatin 4	protein-coding
162468	chr3	48506851	48506950	+	0	NA	Intergenic	Intergenic	-2074	NM_001272066	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
136574	chr2	177799571	177799830	+	0	NA	intron (NM_001077358, intron 8 of 18)	L1M6|LINE|L1	89056	NM_001077196	50940		NM_016953	ENSG00000128655	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
187146	chr5	140549271	140549980	+	0	NA	TTS (NM_003732)	TTS (NM_003732)	1963	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
26227	chr10	14586701	14587400	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-14675	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
14830	chr1	146315371	146315530	+	0	NA	Intergenic	L1PA15|LINE|L1	17459	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
37304	chr11	14749001	14749400	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	105396	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
174438	chr4	39695621	39696350	+	0	NA	Intergenic	MIR3|SINE|MIR	-2151	NM_001312646	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
203514	chr7	709451	709750	+	0	NA	intron (NM_001164759, intron 2 of 10)	AluYf1|SINE|Alu	2924	NM_002735	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
19252	chr1	172674071	172674230	+	0	NA	Intergenic	Intergenic	15047	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
45818	chr11	119355301	119355650	+	0	NA	3' UTR (NM_004205, exon 13 of 13)	3' UTR (NM_004205, exon 13 of 13)	8733	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
186756	chr5	139319971	139320480	+	0	NA	intron (NM_199189, intron 12 of 17)	AluYj4|SINE|Alu	-21607	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
61909	chr13	77492951	77493150	+	0	NA	Intergenic	Intergenic	-42624	NM_001160706	8796		NM_003843	ENSG00000136155	SCEL	-	sciellin	protein-coding
65901	chr14	55273671	55274200	+	0	NA	intron (NM_152231, intron 1 of 1)	AluSg|SINE|Alu	1781	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
163151	chr3	50151601	50152500	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-3008	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
92646	chr17	10226721	10227180	+	0	NA	Intergenic	Intergenic	-28344	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
78147	chr15	90403021	90403280	+	0	NA	intron (NM_003870, intron 2 of 37)	AluJr|SINE|Alu	14908	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
82900	chr16	21636871	21637030	+	0	NA	intron (NM_001288660, intron 4 of 4)	LTR12D|LTR|ERV1	15658	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
76092	chr15	72490051	72490450	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	15920	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
94257	chr17	28690401	28690800	+	0	NA	intron (NM_003170, intron 26 of 36)	AluSx1|SINE|Alu	19504	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
125971	chr2	25254071	25254580	+	0	NA	intron (NR_135490, intron 6 of 23)	intron (NR_135490, intron 6 of 23)	-2010	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
68352	chr14	77707351	77708600	+	0	NA	promoter-TSS (NM_006020)	promoter-TSS (NM_006020)	48	NM_006020	8846		NM_006020	ENSG00000100601	ALKBH1	ABH|ABH1|ALKBH|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding
208964	chr7	74192071	74192230	+	0	NA	TTS (NR_030321)	TTS (NR_030321)	952	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
128089	chr2	47898301	47898900	+	0	NA	intron (NM_001190274, intron 1 of 22)	intron (NM_001190274, intron 1 of 22)	6738	NM_001374325	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
158345	chr22	50456801	50457630	+	0	NA	intron (NM_002972, intron 28 of 40)	intron (NM_002972, intron 28 of 40)	17820	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
17267	chr1	156390501	156391100	+	0	NA	Intergenic	Intergenic	21589	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
227833	chr9	93459551	93460050	+	0	NA	intron (NM_001286723, intron 1 of 9)	MER20|DNA|hAT-Charlie	-6199	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
25495	chr10	7035151	7035530	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	151444	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
98782	chr17	48140101	48140730	+	0	NA	intron (NM_001075099, intron 11 of 12)	L2b|LINE|L2	16096	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
25801	chr10	11185051	11185700	+	0	NA	intron (NM_001326346, intron 2 of 11)	L1ME1|LINE|L1	20345	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
21809	chr1	207282801	207283300	+	0	NA	Intergenic	Intergenic	-38628	NM_001300903	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
204492	chr7	4765101	4765480	+	0	NA	3' UTR (NM_001037165, exon 9 of 9)	3' UTR (NM_001037165, exon 9 of 9)	-10333	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
156556	chr22	41442101	41442580	+	0	NA	intron (NM_016272, intron 1 of 1)	intron (NM_016272, intron 1 of 1)	4461	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
158870	chr3	9853321	9853980	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-9591	NM_001351737	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
131963	chr2	99559101	99559380	+	0	NA	intron (NM_001025108, intron 20 of 23)	intron (NM_001025108, intron 20 of 23)	-69223	NR_135650	51455		NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1 DNA directed polymerase	protein-coding
90545	chr17	1497701	1498300	+	0	NA	exon (NM_001135642, exon 10 of 14)	exon (NM_001135642, exon 10 of 14)	-5314	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
138262	chr2	203329951	203330330	+	0	NA	intron (NR_164710, intron 1 of 8)	intron (NR_164710, intron 1 of 8)	1746	NM_001375721	10152		NM_005759	ENSG00000138443	ABI2	ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB	abl interactor 2	protein-coding
148871	chr21	8439201	8440100	+	0	NA	promoter-TSS (NR_146147).4	promoter-TSS (NR_146147).4	-172	NR_003285	100008587		NR_003285		RNA5-8SN5	RN5-8S1|RNA5-8S5	RNA, 5.8S ribosomal N5	rRNA
162496	chr3	48570401	48570980	+	0	NA	exon (NM_000094, exon 96 of 119)	exon (NM_000094, exon 96 of 119)	-6909	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
160510	chr3	30635821	30636380	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	29499	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
213304	chr7	135152371	135152530	+	0	NA	intron (NM_018295, intron 1 of 1)	MIR|SINE|MIR	4378	NM_018295	55281		NM_018295	ENSG00000146859	TMEM140	-	transmembrane protein 140	protein-coding
77448	chr15	84341401	84341600	+	0	NA	Intergenic	Intergenic	-81019	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
115674	chr19	16173021	16173480	+	0	NA	intron (NM_054113, intron 1 of 5)	intron (NM_054113, intron 1 of 5)	275	NM_054113	117286		NM_054113	ENSG00000141977	CIB3	KIP3	calcium and integrin binding family member 3	protein-coding
238551	chrX	153780701	153781830	+	0	NA	exon (NM_001170761, exon 2 of 16)	exon (NM_001170761, exon 2 of 16)	224	NM_001170760	26576		NM_014370	ENSG00000184343	SRPK3	MSSK-1|MSSK1|STK23	SRSF protein kinase 3	protein-coding
223351	chr8	143858151	143858850	+	0	NA	exon (NM_031308, exon 2 of 2)	exon (NM_031308, exon 2 of 2)	-17527	NM_178564	340371		NM_178564	ENSG00000185189	NRBP2	TRG16|pp9320	nuclear receptor binding protein 2	protein-coding
213031	chr7	131035771	131036300	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	70995	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
212662	chr7	129543151	129543850	+	0	NA	Intergenic	MIRc|SINE|MIR	40969	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
88735	chr16	86317121	86317580	+	0	NA	Intergenic	Intergenic	28329	NR_024406	732275		NR_024406	ENSG00000168367	LINC00917	-	long intergenic non-protein coding RNA 917	ncRNA
103530	chr17	78583171	78583330	+	0	NA	Intergenic	Intergenic	-5854	NM_173628	8632		NM_003727	ENSG00000187775	DNAH17	DNAHL1|DNEL2|SPGF39	dynein axonemal heavy chain 17	protein-coding
69300	chr14	93111601	93112000	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	4125	NM_001142594	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
25460	chr10	6635871	6636230	+	0	NA	TTS (NR_039659).2	TTS (NR_039659).2	980	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
25108	chr10	3947451	3947830	+	0	NA	Intergenic	Intergenic	-43520	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
121019	chr19	45794501	45795050	+	0	NA	TTS (NM_030785)	TTS (NM_030785)	-1930	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
228982	chr9	113548471	113549180	+	0	NA	intron (NM_001276261, intron 10 of 14)	intron (NM_001276261, intron 10 of 14)	12214	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
202981	chr6	161370651	161371580	+	0	NA	intron (NM_013987, intron 9 of 10)	intron (NM_013987, intron 9 of 10)	-97054	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
42207	chr11	68021251	68021550	+	0	NA	intron (NM_001030010, intron 5 of 8)	intron (NM_001030010, intron 5 of 8)	-9281	NM_002496	4728		NM_002496	ENSG00000110717	NDUFS8	CI-23k|CI23KD|MC1DN2|TYKY	NADH:ubiquinone oxidoreductase core subunit S8	protein-coding
124707	chr2	3586671	3587030	+	0	NA	Intergenic	AluY|SINE|Alu	-7982	NM_001255983	78989		NM_024027	ENSG00000118004	COLEC11	3MC2|CL-11|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
57560	chr12	122212651	122212950	+	0	NA	intron (NM_019887, intron 6 of 6)	AluY|SINE|Alu	9091	NM_030765	79369		NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
228213	chr9	97852751	97853300	+	0	NA	promoter-TSS (NM_004473)	promoter-TSS (NM_004473)	55	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
174867	chr4	48727601	48727800	+	0	NA	intron (NM_015030, intron 1 of 63)	L1MCa|LINE|L1	52579	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
98991	chr17	48741801	48742000	+	0	NA	Intergenic	AluJo|SINE|Alu	-13150	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
24120	chr1	235697451	235697950	+	0	NA	intron (NM_001301365, intron 45 of 52)	L2c|LINE|L2	-46946	NM_001098721	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
162837	chr3	49279371	49279730	+	0	NA	intron (NM_199443, intron 19 of 20)	intron (NM_199443, intron 19 of 20)	-2318	NM_198562	375341		NM_198562	ENSG00000188315	C3orf62	MAPS	chromosome 3 open reading frame 62	protein-coding
30340	chr10	77603571	77603730	+	0	NA	intron (NM_001322836, intron 1 of 27)	intron (NM_001322836, intron 1 of 27)	34158	NM_001161353	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
48609	chr12	10360371	10360530	+	0	NA	Intergenic	Intergenic	-3319	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
28786	chr10	62063901	62064100	+	0	NA	intron (NM_001244638, intron 4 of 6)	intron (NM_001244638, intron 4 of 6)	14643	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
190587	chr5	181096921	181097250	+	0	NA	Intergenic	tRNA-Val-GTG|tRNA|tRNA	28219	NM_001258283	26693		NM_001258283	ENSG00000185372	OR2V1	OR2V1P|OST265	olfactory receptor family 2 subfamily V member 1	protein-coding
135721	chr2	169327271	169327630	+	0	NA	intron (NM_004525, intron 1 of 78)	SVA_F|Retroposon|SVA	35084	NM_004525	4036		NM_004525	ENSG00000081479	LRP2	DBS|GP330|LRP-2	LDL receptor related protein 2	protein-coding
170369	chr3	184618451	184618750	+	0	NA	Intergenic	MIR|SINE|MIR	56815	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
182226	chr5	56893621	56893880	+	0	NA	3' UTR (NM_005921, exon 20 of 20)	3' UTR (NM_005921, exon 20 of 20)	-15510	NM_001323022	133383		NM_153706	ENSG00000155542	SETD9	C5orf35	SET domain containing 9	protein-coding
221912	chr8	129023971	129024130	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-58049	NR_145483	106144608		NR_145483	ENSG00000229140	LINC00976	-	long intergenic non-protein coding RNA 976	ncRNA
57595	chr12	122421751	122423750	+	0	NA	promoter-TSS (NM_002956)	promoter-TSS (NM_002956)	-81	NM_198240	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
150175	chr21	39196121	39197180	+	0	NA	exon (NM_018963, exon 41 of 42)	exon (NM_018963, exon 41 of 42)	-13136	NM_203433	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
63480	chr13	114157721	114158550	+	0	NA	Intergenic	Intergenic	-25512	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
115773	chr19	16344971	16345330	+	0	NA	Intergenic	AluSx1|SINE|Alu	20324	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
160767	chr3	32688371	32688930	+	0	NA	intron (NR_046352, intron 1 of 16)	AluJr|SINE|Alu	3462	NM_015442	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
165439	chr3	98539571	98539730	+	0	NA	Intergenic	FLAM_C|SINE|Alu	7672	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
224135	chr9	4740371	4743000	+	0	NA	promoter-TSS (NM_016282)	promoter-TSS (NM_016282)	114	NM_001199855	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
1156	chr1	2201971	2202130	+	0	NA	intron (NM_001282670, intron 3 of 7)	intron (NM_001282670, intron 3 of 7)	5683	NM_001146310	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
85313	chr16	49528171	49528750	+	0	NA	intron (NM_001379286, intron 5 of 7)	intron (NM_001379286, intron 5 of 7)	-9875	NR_144553	1596		NR_144553	ENSG00000260089	ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
221283	chr8	122909551	122909850	+	0	NA	intron (NM_001362797, intron 3 of 4)	intron (NM_001362797, intron 3 of 4)	116072	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
237256	chrX	110259271	110259430	+	0	NA	intron (NM_001025580, intron 1 of 4)	intron (NM_001025580, intron 1 of 4)	-34290	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
211833	chr7	108497121	108497600	+	0	NA	intron (NM_001256010, intron 5 of 9)	intron (NM_001256010, intron 5 of 9)	28775	NM_001256007	50640		NM_015723	ENSG00000135241	PNPLA8	IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma	patatin like phospholipase domain containing 8	protein-coding
53608	chr12	68113601	68113980	+	0	NA	Intergenic	Intergenic	45950	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
157142	chr22	42829621	42830080	+	0	NA	intron (NM_001142293, intron 5 of 14)	L1M4|LINE|L1	27423	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
210611	chr7	100435001	100435900	+	0	NA	exon (NM_145030, exon 4 of 4)	exon (NM_145030, exon 4 of 4)	1047	NM_145030	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
209946	chr7	92627351	92627650	+	0	NA	intron (NM_001145306, intron 5 of 7)	MLT1A0|LTR|ERVL-MaLR	-37110	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
98586	chr17	47731481	47732280	+	0	NA	Intergenic	Intergenic	-1356	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
27843	chr10	38573451	38573630	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	-123056	NR_045000	399746		NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
223800	chr8	144786401	144787720	+	0	NA	intron (NM_001378028, intron 1 of 6)	CpG	257	NM_001378029	80778		NM_030580	ENSG00000196378	ZNF34	KOX32	zinc finger protein 34	protein-coding
146014	chr20	46688271	46688430	+	0	NA	intron (NM_033550, intron 1 of 1)	MIRb|SINE|MIR	1094	NM_033550	112858		NM_033550	ENSG00000172315	TP53RK	BUD32|C20orf64|GAMOS4|Nori-2|Nori-2p|PRPK|TPRKB|dJ101A2	TP53 regulating kinase	protein-coding
156752	chr22	41834951	41835200	+	0	NA	promoter-TSS (NR_157279)	promoter-TSS (NR_157279)	-410	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
196644	chr6	44291821	44292730	+	0	NA	intron (NM_182539, intron 1 of 4)	L2c|LINE|L2	5423	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
50926	chr12	49340151	49340650	+	0	NA	Intergenic	Intergenic	-3212	NM_001008223	338761		NM_001008223	ENSG00000186897	C1QL4	C1QTNF11|CTRP11	complement C1q like 4	protein-coding
125645	chr2	19868651	19869780	+	0	NA	intron (NR_033875, intron 1 of 9)	intron (NR_033875, intron 1 of 9)	361	NR_033875	400946		NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
114066	chr19	11088401	11088630	+	0	NA	promoter-TSS (NM_001195798)	promoter-TSS (NM_001195798)	-948	NM_001195799	3949		NM_000527	ENSG00000130164	LDLR	FH|FHC|FHCL1|LDLCQ2	low density lipoprotein receptor	protein-coding
79784	chr16	1381621	1382750	+	0	NA	intron (NM_001372107, intron 10 of 14)	intron (NM_001372107, intron 10 of 14)	-2533	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
59114	chr13	21290201	21290950	+	0	NA	intron (NM_001365454, intron 3 of 4)	intron (NM_001365454, intron 3 of 4)	7516	NM_001365454								
61672	chr13	73984771	73986550	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	148269	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
206594	chr7	35728851	35729840	+	0	NA	Intergenic	Intergenic	12908	NR_108082	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
220914	chr8	106765321	106765580	+	0	NA	intron (NM_139166, intron 1 of 1)	intron (NM_139166, intron 1 of 1)	4794	NM_139166	137735		NM_139166	ENSG00000174429	ABRA	STARS	actin binding Rho activating protein	protein-coding
117019	chr19	18915401	18916130	+	0	NA	intron (NM_007263, intron 1 of 9)	intron (NM_007263, intron 1 of 9)	3622	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
157099	chr22	42631801	42632400	+	0	NA	intron (NM_001129819, intron 2 of 8)	intron (NM_001129819, intron 2 of 8)	8501	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
14144	chr1	121048951	121049200	+	0	NA	intron (NR_135813, intron 1 of 2)	MER89|LTR|ERV1	3092	NR_135813	101929798		NR_135813	ENSG00000290904	PDE4DIPP4	CH17-118O6.3	PDE4DIP pseudogene 4	pseudo
219822	chr8	81682301	81682500	+	0	NA	intron (NM_001144879, intron 1 of 7)	intron (NM_001144879, intron 1 of 7)	3925	NM_005536	3612		NM_005536	ENSG00000133731	IMPA1	IMP|IMPA|MRT59	inositol monophosphatase 1	protein-coding
107503	chr18	47923501	47923700	+	0	NA	intron (NM_001135937, intron 1 of 9)	intron (NM_001135937, intron 1 of 9)	7059	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
85126	chr16	34586471	34587200	+	0	NA	Intergenic	Intergenic	-205355	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
134104	chr2	132280751	132280930	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-22807	NR_152415	554226		NM_001024655	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B like	protein-coding
194855	chr6	34489351	34489650	+	0	NA	intron (NM_020804, intron 1 of 9)	intron (NM_020804, intron 1 of 9)	23424	NM_020804	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
140196	chr2	231680621	231681600	+	0	NA	Intergenic	CpG	-27415	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
88103	chr16	81526571	81527330	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-6952	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
199540	chr6	118810321	118811080	+	0	NA	Intergenic	Intergenic	27992	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
236895	chrX	85003221	85004300	+	0	NA	promoter-TSS (NM_198450)	promoter-TSS (NM_198450)	-117	NM_198450	139322		NM_198450	ENSG00000155008	APOOL	CXorf33|FAM121A|MICOS27|Mic27|UNQ8193	apolipoprotein O like	protein-coding
86389	chr16	66607751	66607850	+	0	NA	intron (NM_144601, intron 2 of 5)	intron (NM_144601, intron 2 of 5)	3069	NR_037619	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
28582	chr10	51697871	51698330	+	0	NA	exon (NM_015235, exon 1 of 1)	exon (NM_015235, exon 1 of 1)	1495	NM_015235	23283		NM_015235	ENSG00000177613	CSTF2T	CstF-64T	cleavage stimulation factor subunit 2 tau variant	protein-coding
196743	chr6	45377221	45379030	+	0	NA	promoter-TSS (NR_146633)	promoter-TSS (NR_146633)	-191	NM_181356	8464		NM_003599	ENSG00000196284	SUPT3H	SPT3|SPT3L	SPT3 homolog, SAGA and STAGA complex component	protein-coding
13965	chr1	120414571	120416300	+	0	NA	intron (NR_102405, intron 1 of 21)	CpG	408	NR_102404	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
137490	chr2	197145121	197146330	+	0	NA	intron (NM_153697, intron 3 of 9)	intron (NM_153697, intron 3 of 9)	-52266	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
197153	chr6	59553901	59554300	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1592654	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
54026	chr12	75507521	75508130	+	0	NA	intron (NM_007043, intron 2 of 9)	MER112|DNA|hAT-Charlie	3784	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
78010	chr15	89760421	89761150	+	0	NA	Intergenic	Intergenic	-9476	NM_018670	55897		NM_018670	ENSG00000166823	MESP1	bHLHc5	mesoderm posterior bHLH transcription factor 1	protein-coding
84466	chr16	30458051	30458150	+	0	NA	Intergenic	Intergenic	-12226	NM_012248	22928		NM_012248	ENSG00000179918	SEPHS2	SPS2	selenophosphate synthetase 2	protein-coding
45952	chr11	121415201	121415400	+	0	NA	Intergenic	L3|LINE|CR1	-37014	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
118535	chr19	36053421	36055750	+	0	NA	promoter-TSS (NM_152658)	promoter-TSS (NM_152658)	177	NM_001331102	199745		NM_152658	ENSG00000161277	THAP8	-	THAP domain containing 8	protein-coding
152197	chr22	20114771	20114930	+	0	NA	promoter-TSS (NR_106874)	promoter-TSS (NR_106874)	-99	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
760	chr1	1507871	1508550	+	0	NA	Intergenic	Intergenic	-3952	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
112117	chr19	5594321	5595400	+	0	NA	intron (NM_014649, intron 14 of 20)	AluJr|SINE|Alu	-26826	NR_027064								
200263	chr6	132512521	132513750	+	0	NA	promoter-TSS (NM_001326580)	promoter-TSS (NM_001326580)	-19	NM_003569	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
13990	chr1	120624571	120624800	+	0	NA	intron (NR_144516, intron 4 of 43)	L2a|LINE|L2	40751	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
139808	chr2	230334151	230334650	+	0	NA	intron (NM_138402, intron 2 of 18)	HAL1|LINE|L1	7207	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
217283	chr8	27357101	27358000	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	31986	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
194961	chr6	35304451	35304630	+	0	NA	intron (NM_022047, intron 1 of 10)	L2a|LINE|L2	6722	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
137761	chr2	198296401	198297000	+	0	NA	Intergenic	Intergenic	78397	NR_110267	101927619		NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
185584	chr5	131393371	131393530	+	0	NA	3' UTR (NM_001375635, exon 5 of 5)	3' UTR (NM_001375635, exon 5 of 5)	129397	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
20745	chr1	200974271	200975080	+	0	NA	intron (NM_017596, intron 33 of 33)	intron (NM_017596, intron 33 of 33)	45731	NR_147176	647215		NR_147176	ENSG00000293444	MROH3P	C1orf81	maestro heat like repeat family member 3, pseudogene	pseudo
209690	chr7	82443571	82444280	+	0	NA	promoter-TSS (NM_001366867)	promoter-TSS (NM_001366867)	31	NM_001366867	781		NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|DEE110|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding
175741	chr4	77713251	77713550	+	0	NA	TTS (NM_001286790)	TTS (NM_001286790)	105664	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
126046	chr2	25378801	25379850	+	0	NA	intron (NM_001351394, intron 16 of 17)	intron (NM_001351394, intron 16 of 17)	-36735	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
109196	chr19	405621	406130	+	0	NA	3' UTR (NM_001136263, exon 2 of 2)	3' UTR (NM_001136263, exon 2 of 2)	3272	NM_001136263	126567		NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium dependent domain containing 4C	protein-coding
217912	chr8	37902651	37902950	+	0	NA	Intergenic	Intergenic	-3303	NM_025151	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
133055	chr2	112252571	112253280	+	0	NA	intron (NM_032494, intron 1 of 8)	AluY|SINE|Alu	2117	NM_032494	84524		NM_032494	ENSG00000144161	ZC3H8	Fliz1|ZC3HDC8	zinc finger CCCH-type containing 8	protein-coding
28318	chr10	46283751	46283850	+	0	NA	Intergenic	Intergenic	-1050	NR_160731	105378577		NR_160731		LOC105378577	-	uncharacterized LOC105378577	ncRNA
167985	chr3	136730701	136731400	+	0	NA	intron (NM_005862, intron 1 of 33)	intron (NM_005862, intron 1 of 33)	21328	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
134565	chr2	144201851	144202150	+	0	NA	intron (NM_001354351, intron 7 of 15)	intron (NM_001354351, intron 7 of 15)	35339	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
9552	chr1	51569121	51570180	+	0	NA	non-coding (NR_161259, exon 4 of 9)	non-coding (NR_161259, exon 4 of 9)	14081	NR_161259	441884		NR_161259		CALR4P	-	calreticulin 4, pseudogene	pseudo
152222	chr22	20140271	20141030	+	0	NA	exon (NM_013373, exon 6 of 11)	exon (NM_013373, exon 6 of 11)	8846	NM_013373	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
183621	chr5	80222521	80223050	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluSq2|SINE|Alu	33263	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
191248	chr6	5891521	5892730	+	0	NA	Intergenic	L1PA2|LINE|L1	111919	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
48972	chr12	12997171	12997330	+	0	NA	intron (NM_015987, intron 1 of 3)	intron (NM_015987, intron 1 of 3)	3015	NM_015987	50865		NM_015987	ENSG00000013583	HEBP1	HBP|HEBP	heme binding protein 1	protein-coding
90458	chr17	1379021	1379480	+	0	NA	intron (NR_024058, intron 1 of 6)	AluJb|SINE|Alu	20972	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
77555	chr15	84762921	84763180	+	0	NA	intron (NM_014630, intron 1 of 10)	intron (NM_014630, intron 1 of 10)	14458	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
48301	chr12	8987221	8988500	+	0	NA	intron (NR_137427, intron 1 of 2)	L1MB2|LINE|L1	-1686	NM_005810	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
199273	chr6	111864671	111865380	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	8046	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
155784	chr22	39256071	39256230	+	0	NA	Intergenic	Intergenic	-11168	NM_002608	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
33748	chr10	122423451	122424050	+	0	NA	intron (NR_165165, intron 9 of 12)	MIRb|SINE|MIR	6785	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
145135	chr20	38819421	38820050	+	0	NA	intron (NM_001172735, intron 1 of 9)	MER5B|DNA|hAT-Charlie	14038	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
109168	chr19	293521	293930	+	0	NA	Intergenic	Intergenic	-2322	NM_003712	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
76104	chr15	72501471	72501950	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	27380	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
39482	chr11	61007221	61008980	+	0	NA	intron (NM_006725, intron 3 of 12)	CpG	36420	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
8818	chr1	42951051	42951150	+	0	NA	intron (NM_006516, intron 1 of 9)	L2a|LINE|L2	7768	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
61225	chr13	49628221	49628930	+	0	NA	promoter-TSS (NM_138450)	promoter-TSS (NM_138450)	68	NM_138450	115761		NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP ribosylation factor like GTPase 11	protein-coding
124882	chr2	8328271	8328800	+	0	NA	promoter-TSS (NR_034135)	promoter-TSS (NR_034135)	-116	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
81613	chr16	10739951	10740550	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-3536	NM_001278506	4682		NM_002484	ENSG00000103274	NUBP1	CIAO5|NBP|NBP1|NBP35	NUBP iron-sulfur cluster assembly factor 1, cytosolic	protein-coding
138036	chr2	201330901	201331100	+	0	NA	intron (NR_110620, intron 6 of 13)	AluJr|SINE|Alu	26345	NM_001127391	130540		NM_139163	ENSG00000155749	FLACC1	ALS2CR12	flagellum associated containing coiled-coil domains 1	protein-coding
192357	chr6	24583351	24583830	+	0	NA	promoter-TSS (NM_001252328)	promoter-TSS (NM_001252328)	-363	NM_001252328	9856		NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
172900	chr4	3483571	3484080	+	0	NA	promoter-TSS (NM_001256896)	promoter-TSS (NM_001256896)	-719	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
155683	chr22	39067101	39067300	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-9805	NM_001349437	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
165876	chr3	106083321	106083580	+	0	NA	Intergenic	Intergenic	-214049	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
221859	chr8	128296901	128297300	+	0	NA	Intergenic	L2a|LINE|L2	146984	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
158608	chr3	4841471	4842230	+	0	NA	intron (NM_002222, intron 57 of 57)	intron (NM_002222, intron 57 of 57)	64651	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
151405	chr21	45990201	45990800	+	0	NA	intron (NM_001848, intron 13 of 34)	intron (NM_001848, intron 13 of 34)	8730	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
193269	chr6	29965821	29966780	+	0	NA	Intergenic	Intergenic	-8815	NR_028032	10255		NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9	ncRNA
42719	chr11	72684601	72685600	+	0	NA	TTS (NM_001135190)	TTS (NM_001135190)	-10678	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
32787	chr10	104809821	104809900	+	0	NA	intron (NM_014978, intron 1 of 26)	intron (NM_014978, intron 1 of 26)	-143644	NR_104028	100505890		NR_104028	ENSG00000226387	SORCS3-AS1	-	SORCS3 antisense RNA 1	ncRNA
230364	chr9	128064821	128065480	+	0	NA	intron (NM_197956, intron 1 of 1)	AluSq|SINE|Alu	2170	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
134472	chr2	143249871	143250030	+	0	NA	intron (NM_018460, intron 5 of 13)	intron (NM_018460, intron 5 of 13)	120531	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
47528	chr12	4215101	4216180	+	0	NA	Intergenic	Intergenic	-58122	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
56544	chr12	116878601	116879080	+	0	NA	intron (NR_073189, intron 1 of 4)	CpG	2601	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
113556	chr19	10247521	10247780	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4314	NM_146387	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
172650	chr4	2593371	2593530	+	0	NA	intron (NM_001366318, intron 1 of 20)	L2a|LINE|L2	-31982	NM_003704	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
33971	chr10	124652651	124654030	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-50688	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
154018	chr22	30434371	30434530	+	0	NA	intron (NR_148046, intron 3 of 3)	intron (NR_148046, intron 3 of 3)	1764	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
146387	chr20	49288521	49288950	+	0	NA	intron (NR_003604, intron 4 of 4)	intron (NR_003604, intron 4 of 4)	8052	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
114098	chr19	11121121	11121780	+	0	NA	intron (NM_001195800, intron 12 of 15)	AluSc8|SINE|Alu	7976	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
158958	chr3	10213371	10213530	+	0	NA	intron (NM_001570, intron 5 of 12)	intron (NM_001570, intron 5 of 12)	-35009	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
104864	chr17	81851871	81852030	+	0	NA	intron (NM_000918, intron 4 of 10)	AluJb|SINE|Alu	8585	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
15885	chr1	151513601	151514180	+	0	NA	intron (NM_020770, intron 1 of 20)	intron (NM_020770, intron 1 of 20)	2503	NM_020770	57530		NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
33302	chr10	114811801	114812000	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-9880	NM_020940	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
56052	chr12	110552201	110553200	+	0	NA	intron (NM_139283, intron 1 of 5)	AluY|SINE|Alu	30618	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
117313	chr19	19504851	19505900	+	0	NA	exon (NM_001384511, exon 13 of 13)	exon (NM_001384511, exon 13 of 13)	10173	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
157393	chr22	44737971	44738480	+	0	NA	TTS (NM_001017529)	TTS (NM_001017529)	-14333	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
67943	chr14	74781771	74781930	+	0	NA	exon (NM_019589, exon 4 of 21)	exon (NM_019589, exon 4 of 21)	18534	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
140168	chr2	231621371	231622150	+	0	NA	Intergenic	Intergenic	28896	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
186552	chr5	138460451	138460950	+	0	NA	Intergenic	L2b|LINE|L2	-4779	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
120930	chr19	45665701	45665900	+	0	NA	Intergenic	AluSg|SINE|Alu	-2421	NM_001308418	2696		NM_000164	ENSG00000010310	GIPR	PGQTL2	gastric inhibitory polypeptide receptor	protein-coding
93201	chr17	17817201	17817450	+	0	NA	exon (NM_001005291, exon 9 of 20)	exon (NM_001005291, exon 9 of 20)	-3394	NR_030361	693120		NR_030361	ENSG00000207839	MIR33B	MIRN33B|hsa-mir-33b|mir-33b	microRNA 33b	ncRNA
60175	chr13	40213021	40213480	+	0	NA	intron (NR_033877, intron 1 of 5)	AluSq2|SINE|Alu	7252	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
84280	chr16	30072201	30072400	+	0	NA	Intergenic	Intergenic	-3694	NM_001303503	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
156880	chr22	42129221	42129880	+	0	NA	intron (NR_002570, intron 2 of 9).5	CpG-19142	1258	NM_001348386	1564		NM_001002910		CYP2D7	CYP2D|CYP2D6|CYP2D7AP|CYP2D7P|CYP2D7P1|CYP2D@|P450C2D|P450DB1|RNA40057	cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)	protein-coding
123017	chr19	51114301	51114930	+	0	NA	Intergenic	Intergenic	-6206	NM_145232	90353		NM_145232	ENSG00000142544	CTU1	ATPBD3|NCS6	cytosolic thiouridylase subunit 1	protein-coding
231530	chr9	131430221	131430930	+	0	NA	intron (NM_013318, intron 2 of 31)	(GT)n|Simple_repeat|Simple_repeat	36489	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
160748	chr3	32500971	32501230	+	0	NA	intron (NM_017801, intron 1 of 3)	AluSx|SINE|Alu	1752	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
30019	chr10	73783901	73784100	+	0	NA	TTS (NM_203298)	TTS (NM_203298)	-1606	NM_001242487	23053		NM_015037	ENSG00000214655	ZSWIM8	KIAA0913	zinc finger SWIM-type containing 8	protein-coding
40087	chr11	62788871	62789330	+	0	NA	promoter-TSS (NR_106806)	promoter-TSS (NR_106806)	-715	NR_106806	102465448		NR_106806	ENSG00000284535	MIR6748	hsa-mir-6748	microRNA 6748	ncRNA
126079	chr2	25804351	25804650	+	0	NA	intron (NM_018263, intron 3 of 11)	intron (NM_018263, intron 3 of 11)	-9809	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
215388	chr7	157471121	157472250	+	0	NA	intron (NR_110157, intron 2 of 3)	intron (NR_110157, intron 2 of 3)	5454	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
129727	chr2	70904021	70904280	+	0	NA	intron (NM_012476, intron 1 of 2)	CpG	3574	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
192851	chr6	27174251	27174350	+	0	NA	Intergenic	AluSq2|SINE|Alu	26674	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
37122	chr11	13318821	13319380	+	0	NA	intron (NM_001351815, intron 2 of 17)	L1ME3G|LINE|L1	41310	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
54396	chr12	89947271	89947430	+	0	NA	promoter-TSS (NR_135019)	promoter-TSS (NR_135019)	-343	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
182099	chr5	56045101	56045500	+	0	NA	Intergenic	AluSc|SINE|Alu	50133	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
130133	chr2	74832151	74832680	+	0	NA	Intergenic	L2a|LINE|L2	-1712	NM_000189	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
218303	chr8	42533421	42533680	+	0	NA	intron (NM_006749, intron 1 of 10)	AluSz6|SINE|Alu	-7598	NM_001135676	114926		NM_138436	ENSG00000176209	SMIM19	C8orf40	small integral membrane protein 19	protein-coding
186635	chr5	138551971	138553150	+	0	NA	Intergenic	Intergenic	6481	NR_145752	109617013		NR_145752	ENSG00000222937	SNORD63B	-	small nucleolar RNA, C/D box 63B	snoRNA
217698	chr8	30129551	30130380	+	0	NA	intron (NM_001128208, intron 3 of 3)	MSTA|LTR|ERVL-MaLR	14700	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
51511	chr12	52156571	52157330	+	0	NA	Intergenic	Intergenic	35064	NM_001081492	144501		NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
95966	chr17	39138751	39139050	+	0	NA	intron (NM_020405, intron 2 of 13)	(ACAC)n|Simple_repeat|Simple_repeat	12737	NM_020405	57125		NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
55519	chr12	105226271	105226500	+	0	NA	intron (NM_018171, intron 2 of 20)	intron (NM_018171, intron 2 of 20)	7020	NM_001251905	55198		NM_018171	ENSG00000136044	APPL2	DIP13B	adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2	protein-coding
109072	chr18	79915871	79916650	+	0	NA	intron (NM_001146343, intron 3 of 3)	CpG	35393	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
203963	chr7	1562171	1562530	+	0	NA	Intergenic	Intergenic	-6145	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
89707	chr16	89405001	89405580	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-25628	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
174848	chr4	48578371	48579000	+	0	NA	intron (NM_015030, intron 23 of 63)	intron (NM_015030, intron 23 of 63)	88433	NM_175619	326340		NM_175619	ENSG00000182223	ZAR1	Z3CXXC6	zygote arrest 1	protein-coding
17494	chr1	156728011	156729930	+	0	NA	promoter-TSS (NM_001303095)	promoter-TSS (NM_001303095)	-204	NM_001370150	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
16558	chr1	154968551	154969530	+	0	NA	intron (NM_001130041, intron 3 of 12)	intron (NM_001130041, intron 3 of 12)	1707	NM_001130040	6464		NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding
63982	chr14	22265301	22265750	+	0	NA	Intergenic	Intergenic	167228	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
19576	chr1	179228751	179230350	+	0	NA	5' UTR (NM_001168238, exon 1 of 12)	5' UTR (NM_001168238, exon 1 of 12)	127	NM_001168238	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
146881	chr20	51504521	51505130	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	37894	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
148399	chr20	63934271	63934730	+	0	NA	3' UTR (NM_025219, exon 5 of 5)	3' UTR (NM_025219, exon 5 of 5)	7044	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
236722	chrX	78102771	78102930	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1398	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
99855	chr17	55577801	55578100	+	0	NA	Intergenic	MER52A|LTR|ERV1	144914	NM_018286	55273		NM_018286	ENSG00000166292	TMEM100	-	transmembrane protein 100	protein-coding
182142	chr5	56270551	56271200	+	0	NA	Intergenic	Intergenic	-37545	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
88078	chr16	81479771	81479930	+	0	NA	intron (NM_198390, intron 1 of 20)	L1MB5|LINE|L1	-15504	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
192965	chr6	27866101	27867000	+	0	NA	TTS (NM_005322)	TTS (NM_005322)	1038	NM_005322	3009		NM_005322	ENSG00000184357	H1-5	H1|H1.5|H1B|H1F5|H1s-3|HIST1H1B	H1.5 linker histone, cluster member	protein-coding
155266	chr22	38008871	38009630	+	0	NA	intron (NM_001301130, intron 5 of 5)	L2a|LINE|L2	20456	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
185036	chr5	115623671	115623830	+	0	NA	intron (NM_181836, intron 1 of 2)	L2b|LINE|L2	2286	NM_181836	51014		NM_181836	ENSG00000134970	TMED7	CGI-109|Tag|p24g3|p24gamma3|p27	transmembrane p24 trafficking protein 7	protein-coding
34919	chr11	414241	416200	+	0	NA	promoter-TSS (NM_001135054)	promoter-TSS (NM_001135054)	-221	NM_001135054	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
44987	chr11	116938301	116938550	+	0	NA	intron (NM_001366686, intron 3 of 24)	G-rich|Low_complexity|Low_complexity	-100475	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
219795	chr8	81229151	81229880	+	0	NA	Intergenic	L2a|LINE|L2	-51021	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
207335	chr7	44060471	44061100	+	0	NA	exon (NM_001284313, exon 11 of 11)	exon (NM_001284313, exon 11 of 11)	4782	NM_000290	5224		NM_000290	ENSG00000164708	PGAM2	GSD10|PGAM-M|PGAMM	phosphoglycerate mutase 2	protein-coding
94531	chr17	29573951	29574050	+	0	NA	TTS (NM_001346079)	TTS (NM_001346079)	5299	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
187197	chr5	140663021	140663580	+	0	NA	TTS (NM_006083)	TTS (NM_006083)	-1499	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
134	chr1	510821	511280	+	0	NA	Intergenic	AluJr|SINE|Alu	-15605	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
90810	chr17	2253521	2254230	+	0	NA	intron (NM_017575, intron 8 of 18)	intron (NM_017575, intron 8 of 18)	12310	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
27419	chr10	31413401	31413600	+	0	NA	intron (NM_001323664, intron 3 of 10)	intron (NM_001323664, intron 3 of 10)	-13745	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
226972	chr9	81686921	81687450	+	0	NA	intron (NM_001303104, intron 2 of 19)	intron (NM_001303104, intron 2 of 19)	2350	NM_001303104	7088		NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1|TLE-1	TLE family member 1, transcriptional corepressor	protein-coding
82402	chr16	16194851	16195150	+	0	NA	intron (NR_147784, intron 10 of 28)	intron (NR_147784, intron 10 of 28)	28471	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
140072	chr2	231439401	231439600	+	0	NA	Intergenic	L1ME2|LINE|L1	16436	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
63791	chr14	21302051	21302350	+	0	NA	intron (NM_020366, intron 4 of 24)	L2c|LINE|L2	-15353	NM_001377950	57096		NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	RPGR interacting protein 1	protein-coding
72996	chr15	40602701	40602900	+	0	NA	intron (NM_144508, intron 1 of 25)	intron (NM_144508, intron 1 of 25)	8551	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
223214	chr8	143591701	143592300	+	0	NA	intron (NM_032378, intron 1 of 9)	intron (NM_032378, intron 1 of 9)	5413	NM_001130057	1936		NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
91483	chr17	4895201	4895830	+	0	NA	intron (NM_015716, intron 25 of 30)	intron (NM_015716, intron 25 of 30)	-4021	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
116708	chr19	18444671	18444900	+	0	NA	exon (NM_006532, exon 12 of 12)	exon (NM_006532, exon 12 of 12)	-6652	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
25962	chr10	11615671	11615830	+	0	NA	Intergenic	Intergenic	-3961	NR_125732	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
164470	chr3	59932151	59932250	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	148709	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
179144	chr4	169610171	169610980	+	0	NA	intron (NR_164631, intron 2 of 14)	AluSz|SINE|Alu	2008	NM_001199400	4750		NM_012224	ENSG00000137601	NEK1	ALS24|NY-REN-55|OFD2|SRPS2|SRPS2A|SRTD6	NIMA related kinase 1	protein-coding
139977	chr2	230894171	230895300	+	0	NA	intron (NR_038238, intron 1 of 3)	intron (NR_038238, intron 1 of 3)	8189	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
209979	chr7	92826121	92826630	+	0	NA	intron (NM_001145306, intron 2 of 7)	L2a|LINE|L2	7584	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
69471	chr14	95196271	95196600	+	0	NA	intron (NM_024734, intron 10 of 12)	intron (NM_024734, intron 10 of 12)	-38425	NM_030621	23405		NM_030621	ENSG00000100697	DICER1	DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2|aviD	dicer 1, ribonuclease III	protein-coding
24577	chr1	245153021	245153630	+	0	NA	Intergenic	CpG	-1660	NM_018012	55083		NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
190969	chr6	2965771	2965930	+	0	NA	intron (NM_001297700, intron 1 of 6)	intron (NM_001297700, intron 1 of 6)	-3720	NM_001271825	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
59535	chr13	27256421	27257400	+	0	NA	TTS (NM_000982).2	TTS (NM_000982).2	1509	NR_002575	619499		NR_002575	ENSG00000207051	SNORA27	ACA27	small nucleolar RNA, H/ACA box 27	snoRNA
93886	chr17	21129121	21129380	+	0	NA	intron (NM_015510, intron 1 of 6)	L2a|LINE|L2	2322	NM_015510	25979		NM_015510	ENSG00000109016	DHRS7B	CGI-93|SDR32C1	dehydrogenase/reductase 7B	protein-coding
65862	chr14	55058471	55058830	+	0	NA	intron (NM_144578, intron 1 of 3)	AluSx|SINE|Alu	7003	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
115218	chr19	14493051	14493580	+	0	NA	intron (NM_005716, intron 1 of 8)	L2a|LINE|L2	2812	NM_202470	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
155298	chr22	38176001	38177100	+	0	NA	intron (NM_001199562, intron 1 of 15)	intron (NM_001199562, intron 1 of 15)	5280	NM_001199562	8398		NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
108885	chr18	79403251	79403930	+	0	NA	intron (NM_001278673, intron 1 of 8)	intron (NM_001278673, intron 1 of 8)	3291	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
130716	chr2	86740821	86741080	+	0	NA	exon (NM_022780, exon 2 of 9)	exon (NM_022780, exon 2 of 9)	-19828	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
118902	chr19	38712571	38712930	+	0	NA	intron (NM_001322033, intron 8 of 20)	intron (NM_001322033, intron 8 of 20)	31724	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
102954	chr17	76696851	76697230	+	0	NA	intron (NM_001008528, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	-8153	NR_130928	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
3506	chr1	16044951	16045750	+	0	NA	intron (NM_000085, intron 2 of 19)	intron (NM_000085, intron 2 of 19)	1568	NM_000085	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
214787	chr7	151121471	151122030	+	0	NA	intron (NM_001350103, intron 9 of 18)	intron (NM_001350103, intron 9 of 18)	7112	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
171255	chr3	195855901	195856100	+	0	NA	intron (NR_134939, intron 1 of 1)	intron (NR_134939, intron 1 of 1)	-1772	NR_134940	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
162447	chr3	48464351	48464900	+	0	NA	exon (NM_130384, exon 11 of 13)	exon (NM_130384, exon 11 of 13)	-1205	NM_007248	11277		NM_007248	ENSG00000213689	TREX1	AGS1|CRV|DRN3|HERNS|RVCLS	three prime repair exonuclease 1	protein-coding
62736	chr13	106534051	106534430	+	0	NA	intron (NM_004093, intron 1 of 4)	CpG	1422	NM_001372057	1948		NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5|ephrin-B2	ephrin B2	protein-coding
73931	chr15	51076321	51076580	+	0	NA	intron (NM_207381, intron 2 of 2)	intron (NM_207381, intron 2 of 2)	18456	NM_001311175	388121		NM_207381	ENSG00000183578	TNFAIP8L3	TIPE3	TNF alpha induced protein 8 like 3	protein-coding
159181	chr3	12833971	12834600	+	0	NA	TTS (NM_001007074)	TTS (NM_001007074)	6165	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
149180	chr21	18443701	18443900	+	0	NA	Intergenic	L1PA14|LINE|L1	-40015	NM_002772	5651		NM_002772	ENSG00000154646	TMPRSS15	ENTK|PRSS7	transmembrane serine protease 15	protein-coding
175412	chr4	70903951	70904500	+	0	NA	intron (NM_173468, intron 1 of 5)	AluSz|SINE|Alu	1856	NM_173468	92597		NM_173468	ENSG00000173542	MOB1B	MATS2|MOB4A|MOBKL1A	MOB kinase activator 1B	protein-coding
232252	chr9	134401221	134401480	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	-5210	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
124750	chr2	6916801	6918160	+	0	NA	promoter-TSS (NM_001349181)	promoter-TSS (NM_001349181)	68	NM_014746	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
103362	chr17	78115451	78116380	+	0	NA	intron (NM_001375353, intron 18 of 19)	intron (NM_001375353, intron 18 of 19)	12840	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
132561	chr2	106436371	106436530	+	0	NA	exon (NM_001144013, exon 11 of 23)	exon (NM_001144013, exon 11 of 23)	31963	NM_001144013	653489		NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2 like and GRIP domain containing 3	protein-coding
3734	chr1	16631221	16632530	+	0	NA	promoter-TSS (NR_026752)	promoter-TSS (NR_026752)	-969	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
111203	chr19	3470571	3470730	+	0	NA	Intergenic	AluJo|SINE|Alu	9875	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
85058	chr16	32035151	32035250	+	0	NA	Intergenic	Intergenic	152913	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
228778	chr9	111482751	111484980	+	0	NA	promoter-TSS (NM_001364930)	promoter-TSS (NM_001364930)	-303	NM_001364931	23392		NM_001080398	ENSG00000136813	ECPAS	ECM29|KIAA0368	Ecm29 proteasome adaptor and scaffold	protein-coding
187222	chr5	140725701	140726730	+	0	NA	promoter-TSS (NR_026705)	promoter-TSS (NR_026705)	56	NR_026705	56662		NR_026705	ENSG00000202515	VTRNA1-3	HVG3|VAULTRC3|VR3|hvg-3	vault RNA 1-3	ncRNA
86187	chr16	57894821	57895080	+	0	NA	intron (NM_001297, intron 31 of 32)	L1MC4a|LINE|L1	76178	NM_001135639	1258		NM_001297	ENSG00000070729	CNGB1	CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45	cyclic nucleotide gated channel subunit beta 1	protein-coding
102604	chr17	75909721	75910180	+	0	NA	3' UTR (NM_001319193, exon 29 of 29)	3' UTR (NM_001319193, exon 29 of 29)	-5066	NM_032478	64978		NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3|mL38	mitochondrial ribosomal protein L38	protein-coding
118652	chr19	37303951	37304350	+	0	NA	Intergenic	SST1|Satellite|centr	-8687	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
5056	chr1	24572451	24572950	+	0	NA	intron (NM_001010980, intron 1 of 3)	intron (NM_001010980, intron 1 of 3)	16613	NM_001010980	400746		NM_001010980	ENSG00000184454	NCMAP	C1orf130|MP11	non-compact myelin associated protein	protein-coding
123230	chr19	52936351	52937080	+	0	NA	intron (NM_001202473, intron 3 of 3)	LTR5B|LTR|ERVK	5879	NR_037805	399669		NM_203307	ENSG00000293246	ZNF321P	ZNF321	zinc finger protein 321, pseudogene	pseudo
101815	chr17	73545371	73545530	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	31767	NR_135635	101928251		NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA
193137	chr6	29589321	29589700	+	0	NA	TTS (NM_007160)	TTS (NM_007160)	1604	NM_007160	7932		NM_007160	ENSG00000204657	OR2H2	FAT11|OLFR2|OLFR42B|OR2H3|dJ271M21.2|hs6M1-12	olfactory receptor family 2 subfamily H member 2	protein-coding
165849	chr3	105859201	105859400	+	0	NA	intron (NM_001321811, intron 2 of 16)	intron (NM_001321811, intron 2 of 16)	8291	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
239238	chrY	12954601	12954800	+	0	NA	Intergenic	MER11B|LTR|ERVK	48995	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
182393	chr5	61284901	61285300	+	0	NA	Intergenic	Intergenic	-20171	NR_146624	105378992		NR_146624	ENSG00000249279	LINC02057	-	long intergenic non-protein coding RNA 2057	ncRNA
54158	chr12	76621271	76621880	+	0	NA	Intergenic	Intergenic	-61804	NM_001319653	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
218009	chr8	38430601	38431000	+	0	NA	intron (NM_001354367, intron 2 of 17)	intron (NM_001354367, intron 2 of 17)	36924	NM_001174066	2260		NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
238928	chrX	154742571	154742930	+	0	NA	intron (NR_104114, intron 1 of 8)	L1MB7|LINE|L1	8327	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
23882	chr1	234876221	234876900	+	0	NA	Intergenic	Intergenic	87439	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
78641	chr15	94266101	94266300	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	34639	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
227443	chr9	90221651	90222980	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-180816	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
126373	chr2	27447521	27447780	+	0	NA	intron (NM_015662, intron 41 of 47)	intron (NM_015662, intron 41 of 47)	5269	NM_001321325	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
131514	chr2	96550071	96550650	+	0	NA	intron (NM_001319094, intron 5 of 6)	CpG	12481	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
208513	chr7	69823971	69825000	+	0	NA	intron (NM_001127232, intron 1 of 4)	intron (NM_001127232, intron 1 of 4)	226010	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
180095	chr5	1153321	1154300	+	0	NA	Intergenic	Intergenic	24795	NR_109911	101928857		NR_109911	ENSG00000249201	TERLR1	CTD-3080P12.3	TERT regulating lncRNA 1	ncRNA
117160	chr19	19332451	19332750	+	0	NA	intron (NM_015329, intron 1 of 18)	intron (NM_015329, intron 1 of 18)	11771	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
9140	chr1	45499271	45500730	+	0	NA	promoter-TSS (NM_001330540)	promoter-TSS (NM_001330540)	73	NM_001358406	126661		NM_001102601	ENSG00000280670	CCDC163	C1orf231|CCDC163P	CCDC163 homolog	protein-coding
100180	chr17	58655101	58655630	+	0	NA	intron (NM_198393, intron 1 of 32)	AluSc|SINE|Alu	36680	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
148093	chr20	63311571	63312130	+	0	NA	intron (NM_020882, intron 13 of 35)	intron (NM_020882, intron 13 of 35)	18664	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
214619	chr7	150722471	150722830	+	0	NA	3' UTR (NM_130759, exon 3 of 3)	3' UTR (NM_130759, exon 3 of 3)	6037	NM_130759	170575		NM_130759	ENSG00000213203	GIMAP1	HIMAP1|IAN2|IMAP1|IMAP38	GTPase, IMAP family member 1	protein-coding
54851	chr12	95473251	95475080	+	0	NA	promoter-TSS (NR_133673)	promoter-TSS (NR_133673)	13	NM_001317183	10988		NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
102703	chr17	76145151	76146580	+	0	NA	intron (NR_040017, intron 4 of 7)	intron (NR_040017, intron 4 of 7)	-4620	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
217666	chr8	30094731	30096530	+	0	NA	intron (NM_015344, intron 1 of 3)	CpG	222	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
200686	chr6	137234371	137234880	+	0	NA	Intergenic	Intergenic	-15240	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
45617	chr11	118910421	118911500	+	0	NA	promoter-TSS (NM_182557)	promoter-TSS (NM_182557)	252	NR_039713	100616376		NR_039713	ENSG00000264211	MIR4492	mir-4492	microRNA 4492	ncRNA
189883	chr5	177321221	177321480	+	0	NA	Intergenic	L1MEd|LINE|L1	-9452	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
31681	chr10	97453771	97454130	+	0	NA	intron (NM_198044, intron 6 of 9)	intron (NM_198044, intron 6 of 9)	7775	NM_198046	84287		NM_032327	ENSG00000171307	ZDHHC16	APH2|DHHC-16	zinc finger DHHC-type palmitoyltransferase 16	protein-coding
35689	chr11	1913951	1914250	+	0	NA	Intergenic	Intergenic	-5603	NM_001042781	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
167492	chr3	129175121	129175650	+	0	NA	intron (NM_001127196, intron 1 of 4)	intron (NM_001127196, intron 1 of 4)	8511	NM_001127196	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
201583	chr6	149337471	149337630	+	0	NA	intron (NM_015093, intron 2 of 8)	intron (NM_015093, intron 2 of 8)	19250	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
138584	chr2	207771951	207772050	+	0	NA	Intergenic	Intergenic	-2094	NM_003468	7855		NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5|MCOPCB11	frizzled class receptor 5	protein-coding
123384	chr19	53912671	53912830	+	0	NA	intron (NM_031896, intron 1 of 5)	intron (NM_031896, intron 1 of 5)	3472	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
121719	chr19	47612851	47613500	+	0	NA	intron (NM_015711, intron 1 of 14)	intron (NM_015711, intron 1 of 14)	4979	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
25178	chr10	5457841	5458030	+	0	NA	non-coding (NR_073040, exon 10 of 10)	non-coding (NR_073040, exon 10 of 10)	11326	NM_005863	10276		NM_005863	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
59633	chr13	28125651	28125750	+	0	NA	Intergenic	LTR29|LTR|ERV1	-12845	NM_175854	255967		NM_175854	ENSG00000152520	PAN3	-	poly(A) specific ribonuclease subunit PAN3	protein-coding
69370	chr14	94022851	94023100	+	0	NA	Intergenic	Intergenic	-3365	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
213731	chr7	140363151	140363450	+	0	NA	intron (NM_032295, intron 5 of 11)	SVA_E|Retroposon|SVA	35230	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
145429	chr20	43464501	43464780	+	0	NA	TTS (NR_034009)	TTS (NR_034009)	6744	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
43292	chr11	76151721	76152530	+	0	NA	Intergenic	Intergenic	54377	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
224204	chr9	5510101	5510900	+	0	NA	promoter-TSS (NM_025239)	promoter-TSS (NM_025239)	-31	NM_025239	80380		NM_025239	ENSG00000197646	PDCD1LG2	B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2	programmed cell death 1 ligand 2	protein-coding
214251	chr7	148912801	148913550	+	0	NA	Intergenic	Intergenic	-28313	NR_001571	6090		NR_001571		RNY5	Y5|hY5	RNA, Ro60-associated Y5	ncRNA
15250	chr1	149619801	149620000	+	0	NA	intron (NR_111950, intron 1 of 8)	intron (NR_111950, intron 1 of 8)	12888	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
114562	chr19	12895051	12895150	+	0	NA	intron (NM_000159, intron 6 of 11)	L2c|LINE|L2	3940	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
227365	chr9	89487371	89487530	+	0	NA	intron (NM_001371194, intron 1 of 15)	L1ME2|LINE|L1	-7560	NR_163884	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
87986	chr16	80657751	80657850	+	0	NA	intron (NM_152342, intron 2 of 6)	L1MC5a|LINE|L1	-84992	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
68951	chr14	91401971	91403330	+	0	NA	intron (NM_001080414, intron 3 of 29)	L1ME3Cz|LINE|L1	15170	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
140549	chr2	233262021	233262680	+	0	NA	intron (NM_198890, intron 2 of 13).2	L2a|LINE|L2	10677	NM_017974	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
25871	chr10	11251251	11252000	+	0	NA	intron (NM_001326330, intron 4 of 12)	MIR|SINE|MIR	86595	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
194181	chr6	32118621	32119280	+	0	NA	intron (NM_001136153, intron 10 of 17).4	intron (NM_001136153, intron 10 of 17).4	9296	NM_004381	1388		NM_004381	ENSG00000213676	ATF6B	ATF6beta|CREB-RP|CREBL1|G13	activating transcription factor 6 beta	protein-coding
21879	chr1	207754251	207754630	+	0	NA	intron (NM_172356, intron 1 of 10)	L2a|LINE|L2	2386	NM_172355	4179		NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding
34957	chr11	488001	488400	+	0	NA	exon (NM_001329544, exon 7 of 12)	exon (NM_001329544, exon 7 of 12)	18568	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
128789	chr2	62303851	62304150	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	88479	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
142827	chr20	17503501	17504080	+	0	NA	intron (NM_001195, intron 5 of 7)	intron (NM_001195, intron 5 of 7)	27589	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
38562	chr11	45961771	45961930	+	0	NA	intron (NR_147890, intron 9 of 18)	intron (NR_147890, intron 9 of 18)	39194	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
187577	chr5	142802371	142802530	+	0	NA	intron (NM_001349547, intron 1 of 21)	MER6B|DNA|TcMar-Tigger	31223	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
176976	chr4	104860521	104860800	+	0	NA	Intergenic	Intergenic	-285215	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
70993	chr14	104720601	104721000	+	0	NA	3' UTR (NM_001031714, exon 22 of 22)	3' UTR (NM_001031714, exon 22 of 22)	-3429	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
28396	chr10	47566251	47566750	+	0	NA	Intergenic	Intergenic	-12977	NR_024495	642826		NR_024495		BMS1P2	BMS1LP2|BMS1LP6|BMS1P6|bA144G6.1	BMS1 pseudogene 2	pseudo
27457	chr10	31975321	31975580	+	0	NA	Intergenic	L1MEc|LINE|L1	-46574	NM_001270695	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
70822	chr14	103605901	103606300	+	0	NA	Intergenic	AluYj4|SINE|Alu	-23088	NM_005552	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
200112	chr6	130202171	130202330	+	0	NA	intron (NM_001258275, intron 7 of 13)	L2a|LINE|L2	13635	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
83264	chr16	23959871	23960600	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	124252	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
82970	chr16	21947071	21947430	+	0	NA	Intergenic	Intergenic	-6111	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
55557	chr12	105960451	105961330	+	0	NA	Intergenic	Intergenic	179143	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
211650	chr7	106260151	106261180	+	0	NA	intron (NM_005746, intron 8 of 10)	Tigger1|DNA|TcMar-Tigger	24318	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
43561	chr11	83000801	83001200	+	0	NA	intron (NM_001286060, intron 1 of 4)	AluYd8|SINE|Alu	33274	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
126542	chr2	28582871	28583230	+	0	NA	intron (NM_153021, intron 25 of 57)	intron (NM_153021, intron 25 of 57)	16693	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
111156	chr19	3306571	3307100	+	0	NA	Intergenic	Intergenic	-52795	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
114475	chr19	12744251	12744550	+	0	NA	intron (NM_001371488, intron 3 of 7)	AluSx1|SINE|Alu	6903	NM_004317	439		NM_004317	ENSG00000198356	GET3	ARSA-I|ARSA1|ASNA-I|ASNA1|CMD2H|TRC40	guided entry of tail-anchored proteins factor 3, ATPase	protein-coding
27935	chr10	42070301	42071150	+	0	NA	Intergenic	Intergenic	297320	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
160067	chr3	18713001	18713430	+	0	NA	Intergenic	Intergenic	-267623	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
40630	chr11	64715321	64715800	+	0	NA	intron (NM_015080, intron 1 of 22)	intron (NM_015080, intron 1 of 22)	7637	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
115073	chr19	14203401	14203980	+	0	NA	intron (NM_001008701, intron 1 of 23)	intron (NM_001008701, intron 1 of 23)	2479	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
4969	chr1	24155401	24155600	+	0	NA	3' UTR (NM_173064, exon 7 of 7)	3' UTR (NM_173064, exon 7 of 7)	-12360	NM_021258	58985		NM_021258	ENSG00000142677	IL22RA1	CRF2-9|IL22R|IL22R1	interleukin 22 receptor subunit alpha 1	protein-coding
128617	chr2	61179121	61179750	+	0	NA	intron (NR_152210, intron 1 of 5)	intron (NR_152210, intron 1 of 5)	2017	NR_152212	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
135021	chr2	156110821	156111080	+	0	NA	intron (NR_110250, intron 1 of 3)	intron (NR_110250, intron 1 of 3)	143981	NR_110250	101929378		NR_110249	ENSG00000226383	LINC01876	uc.83	long intergenic non-protein coding RNA 1876	ncRNA
34435	chr10	132417021	132417650	+	0	NA	3' UTR (NM_001098637, exon 3 of 3)	3' UTR (NM_001098637, exon 3 of 3)	20135	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
109549	chr19	877551	878750	+	0	NA	intron (NM_005481, intron 8 of 15)	intron (NM_005481, intron 8 of 15)	15037	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
211900	chr7	112203751	112204330	+	0	NA	intron (NM_014705, intron 1 of 51)	intron (NM_014705, intron 1 of 51)	2359	NM_001363540	9732		NM_014705	ENSG00000128512	DOCK4	-	dedicator of cytokinesis 4	protein-coding
48679	chr12	10560271	10560700	+	0	NA	intron (NR_146456, intron 1 of 2)	AluSx|SINE|Alu	7106	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
90684	chr17	1724371	1725950	+	0	NA	exon (NM_001163809, exon 1 of 10)	exon (NM_001163809, exon 1 of 10)	456	NM_001163809	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
30057	chr10	73850351	73851030	+	0	NA	intron (NR_160263, intron 4 of 21)	intron (NR_160263, intron 4 of 21)	23865	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
167504	chr3	129225051	129225550	+	0	NA	Intergenic	Intergenic	-24306	NM_016128	22820		NM_016128	ENSG00000181789	COPG1	COPG	COPI coat complex subunit gamma 1	protein-coding
98392	chr17	46558171	46558580	+	0	NA	intron (NM_001039083, intron 3 of 3).2	intron (NM_001039083, intron 3 of 3).2	21316	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
124007	chr19	55461101	55462530	+	0	NA	promoter-TSS (NM_001136201)	promoter-TSS (NM_001136201)	-173	NM_024710	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
74093	chr15	52787171	52787600	+	0	NA	intron (NM_004498, intron 1 of 1)	intron (NM_004498, intron 1 of 1)	2951	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
223933	chr9	706851	707850	+	0	NA	intron (NR_148869, intron 1 of 10)	CpG	673	NM_001354342	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
150826	chr21	44015601	44016430	+	0	NA	intron (NM_003274, intron 1 of 22)	intron (NM_003274, intron 1 of 22)	3706	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
64297	chr14	23557901	23558180	+	0	NA	intron (NM_024328, intron 1 of 1)	intron (NM_024328, intron 1 of 1)	1769	NM_024328	79178		NM_024328	ENSG00000259431	THTPA	THTP|THTPASE	thiamine triphosphatase	protein-coding
42277	chr11	68283151	68283250	+	0	NA	Intergenic	Intergenic	-11227	NM_022338	53838		NM_022338	ENSG00000171067	C11orf24	DM4E3	chromosome 11 open reading frame 24	protein-coding
38291	chr11	43361101	43361300	+	0	NA	intron (NM_001376526, intron 1 of 22)	intron (NM_001376526, intron 1 of 22)	2280	NR_164824	55761		NM_018259	ENSG00000052841	TTC17	-	tetratricopeptide repeat domain 17	protein-coding
121687	chr19	47518151	47518680	+	0	NA	Intergenic	Intergenic	-3352	NR_038456	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
185905	chr5	132779821	132780080	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-2081	NM_001098813	23176		NM_015146	ENSG00000164402	SEPTIN8	SEP2|SEPT8|Septin-8	septin 8	protein-coding
95014	chr17	32388251	32388550	+	0	NA	Intergenic	AluSc|SINE|Alu	38243	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
170763	chr3	188445971	188446600	+	0	NA	intron (NR_164692, intron 3 of 9)	intron (NR_164692, intron 3 of 9)	122381	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
226088	chr9	62801901	62803400	+	0	NA	intron (NR_121647, intron 1 of 4)	CpG	1185	NR_121647	103352539		NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
65748	chr14	53216271	53216430	+	0	NA	Intergenic	L1ME2z|LINE|L1	62996	NR_110062	101927620		NR_110062	ENSG00000258731	DDHD1-DT	-	DDHD1 divergent transcript	ncRNA
41651	chr11	66543471	66544480	+	0	NA	exon (NM_001348571, exon 2 of 5)	exon (NM_001348571, exon 2 of 5)	2073	NM_001348571	254359		NM_207340	ENSG00000174165	ZDHHC24	-	zinc finger DHHC-type containing 24	protein-coding
45659	chr11	119016501	119016850	+	0	NA	TTS (NM_198489)	TTS (NM_198489)	1668	NM_001028	6230		NM_001028	ENSG00000118181	RPS25	S25|eS25	ribosomal protein S25	protein-coding
205241	chr7	8034721	8035050	+	0	NA	intron (NM_138426, intron 3 of 7)	L1PA17|LINE|L1	66089	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
115379	chr19	15241501	15241700	+	0	NA	intron (NM_001379291, intron 14 of 19)	intron (NM_001379291, intron 14 of 19)	-8553	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
120803	chr19	45464321	45464580	+	0	NA	Intergenic	MIR|SINE|MIR	-3546	NM_001114171	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
213609	chr7	139422171	139422530	+	0	NA	3' UTR (NM_001270643, exon 11 of 11)	3' UTR (NM_001270643, exon 11 of 11)	5176	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
99466	chr17	50153671	50155350	+	0	NA	Intergenic	Intergenic	-3833	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
106126	chr18	9233901	9234100	+	0	NA	intron (NM_001204056, intron 7 of 11)	L1MA4A|LINE|L1	96437	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
81134	chr16	4395551	4396330	+	0	NA	intron (NM_001351729, intron 6 of 27)	intron (NM_001351729, intron 6 of 27)	19957	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
206620	chr7	35853251	35853550	+	0	NA	intron (NM_001788, intron 2 of 12)	AluJr|SINE|Alu	52181	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
185655	chr5	131551351	131551450	+	0	NA	intron (NM_016340, intron 5 of 27)	AluSg4|SINE|Alu	83829	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
172833	chr4	3193771	3194730	+	0	NA	intron (NM_002111, intron 40 of 66)	intron (NM_002111, intron 40 of 66)	-50119	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
22767	chr1	224406801	224407180	+	0	NA	intron (NM_001115113, intron 7 of 13)	AluSx1|SINE|Alu	-8679	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
67835	chr14	73918771	73918930	+	0	NA	intron (NM_001242924, intron 9 of 13)	AluY|SINE|Alu	-31084	NM_182480	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
164863	chr3	71067951	71068730	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-3416	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
58577	chr12	132444501	132445500	+	0	NA	Intergenic	Intergenic	-45151	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
213959	chr7	142783121	142783850	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	12515	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
140988	chr2	238042171	238042330	+	0	NA	non-coding (NR_103499, exon 8 of 8)	non-coding (NR_103499, exon 8 of 8)	-18751	NM_016510	51540		NM_016510	ENSG00000132330	SCLY	SCL|hSCL	selenocysteine lyase	protein-coding
59354	chr13	24616621	24617050	+	0	NA	Intergenic	Intergenic	36627	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
143693	chr20	32150471	32150630	+	0	NA	intron (NM_014742, intron 10 of 17)	(TGGGGC)n|Simple_repeat|Simple_repeat	39810	NR_002781	128854		NM_178465	ENSG00000235217	TSPY26P	TSPYL3|bA392M18.1	testis specific protein Y-linked 26, pseudogene	pseudo
14088	chr1	120865871	120866030	+	0	NA	Intergenic	Intergenic	-14965	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
37	chr1	188601	189430	+	0	NA	Intergenic	Intergenic	-1057	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
46245	chr11	124736771	124736930	+	0	NA	Intergenic	Intergenic	-3092	NM_006176	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
198386	chr6	105601321	105601850	+	0	NA	Intergenic	Intergenic	-198503	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
209524	chr7	77061951	77062150	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1169	NM_001351348	100505767		NM_001351348	ENSG00000205482	SPDYE18	-	speedy/RINGO cell cycle regulator family member E18	protein-coding
28851	chr10	62617201	62617600	+	0	NA	Intergenic	Intergenic	-187320	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
167165	chr3	128070151	128070250	+	0	NA	3' UTR (NM_013336, exon 12 of 12)	3' UTR (NM_013336, exon 12 of 12)	-5610	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
66190	chr14	60758401	60758900	+	0	NA	intron (NM_002431, intron 1 of 7)	intron (NM_002431, intron 1 of 7)	23889	NM_001177963	4331		NM_002431	ENSG00000020426	MNAT1	CAP35|MAT1|RNF66|TFB3	MNAT1 component of CDK activating kinase	protein-coding
60733	chr13	44306421	44306880	+	0	NA	Intergenic	Intergenic	-67000	NM_001346980	387923		NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
225416	chr9	35060671	35061250	+	0	NA	intron (NM_001354927, intron 11 of 16)	intron (NM_001354927, intron 11 of 16)	11348	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
186056	chr5	134072451	134072750	+	0	NA	Intergenic	Intergenic	-42081	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
61979	chr13	79525151	79525750	+	0	NA	intron (NM_019080, intron 2 of 7)	Tigger7|DNA|TcMar-Tigger	-41277	NR_125772	103724388		NR_125772	ENSG00000227676	LINC01068	-	long intergenic non-protein coding RNA 1068	ncRNA
65971	chr14	56447351	56447450	+	0	NA	Intergenic	L1PA2|LINE|L1	-66931	NR_135241	101927690		NR_135241	ENSG00000258803	LOC101927690	-	uncharacterized LOC101927690	ncRNA
170664	chr3	187615671	187615930	+	0	NA	Intergenic	L3b|LINE|CR1	54594	NM_001048	6750		NM_001048	ENSG00000157005	SST	SMST|SST1	somatostatin	protein-coding
37374	chr11	16759801	16760200	+	0	NA	Intergenic	L1M7|LINE|L1	21353	NM_014267	10944		NM_014267	ENSG00000110696	C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
144325	chr20	34926751	34927050	+	0	NA	exon (NM_001242393, exon 17 of 18)	exon (NM_001242393, exon 17 of 18)	28735	NM_001322495	2937		NM_000178	ENSG00000100983	GSS	GSHS|HEL-S-64p|HEL-S-88n	glutathione synthetase	protein-coding
10239	chr1	63367301	63368400	+	0	NA	intron (NM_013339, intron 1 of 14)	CpG	223	NM_013339	29929		NM_013339	ENSG00000088035	ALG6	CDG1C	ALG6 alpha-1,3-glucosyltransferase	protein-coding
157777	chr22	46749171	46750550	+	0	NA	Intergenic	MIRc|SINE|MIR	-11608	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
216892	chr8	22673951	22674050	+	0	NA	Intergenic	Intergenic	-4852	NR_156436	55909		NM_018688	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
181824	chr5	52798521	52798830	+	0	NA	intron (NM_181501, intron 1 of 28)	PRIMA4_LTR|LTR|ERV1	10759	NM_015946	53918		NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota mRNA surveillance and ribosome rescue factor	protein-coding
29462	chr10	70493471	70493880	+	0	NA	intron (NM_014431, intron 1 of 19)	L2a|LINE|L2	14908	NM_014431	27143		NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	phosphatase domain containing paladin 1	protein-coding
65302	chr14	50081421	50081800	+	0	NA	intron (NR_131171, intron 2 of 8)	AluSc8|SINE|Alu	23433	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
232350	chr9	135504521	135505480	+	0	NA	TTS (NR_051967)	TTS (NR_051967)	1447	NR_121579	101928525		NR_121579	ENSG00000226706	LOC101928525	-	uncharacterized LOC101928525	ncRNA
237915	chrX	131970301	131970530	+	0	NA	Intergenic	Intergenic	-52887	NM_001042453	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
142545	chr20	5115371	5115780	+	0	NA	intron (NM_182649, intron 4 of 5)	intron (NM_182649, intron 4 of 5)	-2488	NM_001330986	29058		NM_014145	ENSG00000089063	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
113052	chr19	8071971	8072130	+	0	NA	exon (NM_001321431, exon 63 of 64)	exon (NM_001321431, exon 63 of 64)	19288	NM_005624	6370		NM_005624	ENSG00000131142	CCL25	Ck beta-15|Ckb15|SCYA25|TECK|TECKvar	C-C motif chemokine ligand 25	protein-coding
66165	chr14	60625301	60625800	+	0	NA	Intergenic	Intergenic	-13666	NR_126480	104548971		NR_126480		SALRNA1	SAL-RNA1|XLOC_023166	senescence associated long non-coding RNA 1	ncRNA
153464	chr22	25400721	25401230	+	0	NA	intron (NM_001135772, intron 1 of 6)	intron (NM_001135772, intron 1 of 6)	4433	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
28158	chr10	43573901	43575180	+	0	NA	promoter-TSS (NM_001324353)	promoter-TSS (NM_001324353)	76	NM_001324348	8187		NM_005674	ENSG00000196793	ZNF239	HOK-2|MOK2	zinc finger protein 239	protein-coding
143794	chr20	32454871	32455030	+	0	NA	intron (NM_080616, intron 3 of 7)	intron (NM_080616, intron 3 of 7)	28540	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
191316	chr6	6788471	6788630	+	0	NA	Intergenic	LTR33|LTR|ERVL	-165724	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
103260	chr17	77664101	77664300	+	0	NA	Intergenic	Intergenic	64359	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
10988	chr1	84496971	84497330	+	0	NA	intron (NM_025065, intron 8 of 8)	AluSc8|SINE|Alu	-9236	NM_001310156	100505741		NM_022354	ENSG00000122432	SPATA1	SP-2|SPAP1	spermatogenesis associated 1	protein-coding
187320	chr5	141633971	141634400	+	0	NA	intron (NR_149165, intron 2 of 13)	L2b|LINE|L2	2664	NR_149167	8841		NM_003883	ENSG00000171720	HDAC3	HD3|KDAC3|RPD3|RPD3-2	histone deacetylase 3	protein-coding
109988	chr19	1413871	1414400	+	0	NA	intron (NM_170711, intron 1 of 12)	AluSx|SINE|Alu	6549	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
18270	chr1	161100951	161101650	+	0	NA	TTS (NR_033386)	TTS (NR_033386)	2939	NM_001007255	126823		NM_152366	ENSG00000162755	KLHDC9	KARCA1	kelch domain containing 9	protein-coding
95837	chr17	38810871	38811030	+	0	NA	intron (NM_017748, intron 4 of 9)	AluSx4|SINE|Alu	-11045	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
138532	chr2	207506571	207506730	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-23312	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123332	chr19	53591951	53592250	+	0	NA	Intergenic	AluSx1|SINE|Alu	11397	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
35982	chr11	2863501	2863700	+	0	NA	Intergenic	AluJb|SINE|Alu	-2031	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
11953	chr1	93878451	93879950	+	0	NA	promoter-TSS (NM_014597)	promoter-TSS (NM_014597)	6	NM_014597	30836		NM_014597	ENSG00000067334	DNTTIP2	ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2	deoxynucleotidyltransferase terminal interacting protein 2	protein-coding
192185	chr6	17678471	17678630	+	0	NA	intron (NM_001278209, intron 2 of 22)	L1M5|LINE|L1	-27580	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
152577	chr22	21122371	21122730	+	0	NA	TTS (NR_037566)	TTS (NR_037566)	19534	NR_037566	400892		NM_207474	ENSG00000291044	BCRP2	BCR-2|BCR2|BCRL2	BCR pseudogene 2	pseudo
138905	chr2	218036421	218036680	+	0	NA	intron (NR_034176, intron 2 of 13)	MER65-int|LTR|ERV1	1616	NR_034176	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
19702	chr1	181080751	181080850	+	0	NA	Intergenic	Intergenic	-7900	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
100648	chr17	63694481	63695800	+	0	NA	TTS (NM_030576)	TTS (NM_030576)	4985	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
109576	chr19	902671	902830	+	0	NA	intron (NM_138774, intron 1 of 7)	AluSz|SINE|Alu	9266	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
141774	chr2	242083001	242083200	+	0	NA	intron (NR_146651, intron 1 of 3)	L1PREC2|LINE|L1	1038	NR_146651	105373979		NR_146651	ENSG00000232002	LINC01880	-	long intergenic non-protein coding RNA 1880	ncRNA
184740	chr5	109707651	109707950	+	0	NA	intron (NM_002372, intron 1 of 21)	L2b|LINE|L2	18434	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
77653	chr15	85503221	85503480	+	0	NA	intron (NM_007200, intron 2 of 36)	MIRb|SINE|MIR	-116600	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
2061	chr1	7915601	7916400	+	0	NA	3' UTR (NM_001561, exon 8 of 8)	3' UTR (NM_001561, exon 8 of 8)	24839	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
74475	chr15	59803371	59804200	+	0	NA	Intergenic	L1PA4|LINE|L1	-114465	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
91338	chr17	4444571	4445180	+	0	NA	intron (NM_001320449, intron 2 of 10)	intron (NM_001320449, intron 2 of 10)	10935	NM_182538	201305		NM_182538	ENSG00000182557	SPNS3	SLC62A3|SLC63A3	SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)	protein-coding
72918	chr15	40370001	40371000	+	0	NA	3' UTR (NM_033510, exon 8 of 8)	3' UTR (NM_033510, exon 8 of 8)	-12221	NM_033286	90417		NM_033286	ENSG00000128944	KNSTRN	C15orf23|HSD11|ROCHIS|SKAP|TRAF4AF1	kinetochore localized astrin (SPAG5) binding protein	protein-coding
53877	chr12	70258801	70259150	+	0	NA	intron (NR_037615, intron 1 of 16)	L2a|LINE|L2	15261	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
146155	chr20	48719071	48719930	+	0	NA	intron (NM_020820, intron 5 of 39)	intron (NM_020820, intron 5 of 39)	108499	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
131458	chr2	96340821	96341230	+	0	NA	intron (NM_001281712, intron 1 of 16)	L1MC5a|LINE|L1	5259	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
191537	chr6	11415721	11415980	+	0	NA	Intergenic	AluSc8|SINE|Alu	-33502	NR_073131	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
36840	chr11	10297921	10299180	+	0	NA	Intergenic	Intergenic	-4343	NM_030962	81846		NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
154273	chr22	31632271	31632680	+	0	NA	intron (NM_001326416, intron 3 of 10)	MER6A|DNA|TcMar-Tigger	-1651	NM_014338	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
138655	chr2	212812271	212812430	+	0	NA	intron (NR_131941, intron 2 of 4)	intron (NR_131941, intron 2 of 4)	17019	NR_131941	102725079		NR_131941	ENSG00000234308	LINC01878	-	long intergenic non-protein coding RNA 1878	ncRNA
18750	chr1	167489511	167490850	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	28349	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
47467	chr12	3882501	3882700	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-9152	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
212255	chr7	121530401	121531400	+	0	NA	Intergenic	Intergenic	-134532	NM_001040020	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
147745	chr20	62405901	62406100	+	0	NA	intron (NM_031215, intron 1 of 9)	intron (NM_031215, intron 1 of 9)	1283	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
74323	chr15	58444901	58445100	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	13009	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
98022	chr17	45397851	45398150	+	0	NA	exon (NM_199282, exon 10 of 17).2	exon (NM_199282, exon 10 of 17).2	12386	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
81515	chr16	9008571	9008980	+	0	NA	Intergenic	Intergenic	-44869	NM_003470	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
220233	chr8	96338751	96338850	+	0	NA	Intergenic	Intergenic	47848	NR_125829	102724804		NR_125828		LOC102724804	-	uncharacterized LOC102724804	ncRNA
133114	chr2	112651271	112651430	+	0	NA	intron (NM_005415, intron 4 of 10)	intron (NM_005415, intron 4 of 10)	5411	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
52892	chr12	57209501	57209700	+	0	NA	intron (NM_002332, intron 79 of 88)	intron (NM_002332, intron 79 of 88)	-7194	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
19348	chr1	173847401	173848380	+	0	NA	intron (NM_001365212, intron 12 of 15)	AluY|SINE|Alu	-15358	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
141673	chr2	241799701	241799900	+	0	NA	intron (NM_022134, intron 2 of 3)	intron (NM_022134, intron 2 of 3)	-9393	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
168530	chr3	144032801	144033080	+	0	NA	Intergenic	Intergenic	59859	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
52923	chr12	57242351	57243300	+	0	NA	TTS (NM_001286257)	TTS (NM_001286257)	-2133	NM_020142	56901		NM_020142	ENSG00000185633	NDUFA4L2	COXFA4L2|MISTRH|NUOMS	NDUFA4 mitochondrial complex associated like 2	protein-coding
193728	chr6	31205771	31206700	+	0	NA	Intergenic	AluSx|SINE|Alu	8475	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
206174	chr7	28096701	28097330	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-83442	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
31799	chr10	98403871	98404580	+	0	NA	intron (NM_032709, intron 4 of 15)	MER57B1|LTR|ERV1	-8918	NR_031619	100302133		NR_031619	ENSG00000284415	MIR1287	MIRN1287|hsa-mir-1287|mir-1287	microRNA 1287	ncRNA
176949	chr4	103062521	103062800	+	0	NA	intron (NM_178833, intron 3 of 11)	AluSq2|SINE|Alu	14101	NM_001370204	133308		NM_178833	ENSG00000164038	SLC9B2	NHA2|NHE10|NHEDC2	solute carrier family 9 member B2	protein-coding
35791	chr11	2186521	2187580	+	0	NA	Intergenic	Intergenic	13987	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
1417	chr1	2567801	2569230	+	0	NA	intron (NR_121638, intron 1 of 3)	intron (NR_121638, intron 1 of 3)	1980	NR_121638	100996583		NR_121638	ENSG00000228037	LOC100996583	-	uncharacterized LOC100996583	ncRNA
23551	chr1	229286471	229286930	+	0	NA	intron (NR_073545, intron 2 of 7)	intron (NR_073545, intron 2 of 7)	-15546	NR_149313	105373159		NR_149312	ENSG00000177788	RAB4A-AS1	-	RAB4A antisense RNA 1	ncRNA
54318	chr12	89524101	89525300	+	0	NA	promoter-TSS (NR_146294)	promoter-TSS (NR_146294)	96	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
149648	chr21	33548501	33548700	+	0	NA	intron (NM_001291412, intron 2 of 10)	MIR|SINE|MIR	-2062	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
230856	chr9	129129051	129129550	+	0	NA	intron (NM_001271832, intron 3 of 8)	L1MC5a|LINE|L1	17612	NM_001193397	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
205823	chr7	24755271	24756150	+	0	NA	intron (NM_004403, intron 1 of 9)	MIRb|SINE|MIR	1754	NM_001127453	1687		NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
140576	chr2	233350571	233351280	+	0	NA	Intergenic	Intergenic	-3569	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
199018	chr6	111114401	111115200	+	0	NA	TTS (NR_145796)	TTS (NR_145796)	966	NR_145796	109623478		NR_145796		SNORD166	-	small nucleolar RNA, C/D box 166	snoRNA
76921	chr15	78049651	78051200	+	0	NA	intron (NM_144572, intron 2 of 12)	intron (NM_144572, intron 2 of 12)	27227	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
203183	chr6	167141751	167142400	+	0	NA	Intergenic	Intergenic	15905	NM_005299	2853		NM_005299	ENSG00000120436	GPR31	12-HETER|HETER|HETER1	G protein-coupled receptor 31	protein-coding
112471	chr19	6396301	6396900	+	0	NA	intron (NM_001321601, intron 2 of 3)	intron (NM_001321601, intron 2 of 3)	2831	NM_001321601	390877		NM_001321601	ENSG00000293438	LOC390877	-	adenylate kinase isoenzyme 1-like	pseudo
224810	chr9	25677571	25677730	+	0	NA	3' UTR (NM_001004125, exon 1 of 1)	3' UTR (NM_001004125, exon 1 of 1)	794	NM_001004125	286319		NM_001004125	ENSG00000198680	TUSC1	CCDC89B|TSG-9|TSG9	tumor suppressor candidate 1	protein-coding
104356	chr17	80994051	80994380	+	0	NA	intron (NM_024591, intron 1 of 7)	intron (NM_024591, intron 1 of 7)	2374	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
54582	chr12	92402801	92403050	+	0	NA	Intergenic	Intergenic	-18606	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
12407	chr1	101314071	101314580	+	0	NA	Intergenic	Intergenic	-9512	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
185532	chr5	131344201	131345150	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA5|LINE|L1	80622	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
28026	chr10	43210571	43211330	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	18789	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
25003	chr10	3197151	3198150	+	0	NA	Intergenic	Intergenic	-24809	NM_001242307	10531		NM_014889	ENSG00000107959	PITRM1	MP1|PreP|SCAR30	pitrilysin metallopeptidase 1	protein-coding
201755	chr6	149934051	149935250	+	0	NA	non-coding (NR_134598, exon 1 of 2)	non-coding (NR_134598, exon 1 of 2)	137	NR_134598	105378052		NR_134598	ENSG00000293239	LOC105378052	-	uncharacterized LOC105378052	ncRNA
132423	chr2	105826101	105826700	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-25447	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
180478	chr5	12845801	12846030	+	0	NA	Intergenic	L1M2c|LINE|L1	178056	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
96049	chr17	39464801	39465600	+	0	NA	intron (NM_016507, intron 1 of 13)	AluSx3|SINE|Alu	3714	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
122152	chr19	48874201	48876000	+	0	NA	intron (NM_014330, intron 2 of 2)	AluSz6|SINE|Alu	2708	NM_014330	23645		NM_014330	ENSG00000087074	PPP1R15A	GADD34	protein phosphatase 1 regulatory subunit 15A	protein-coding
16182	chr1	153797171	153798550	+	0	NA	Intergenic	CR1_Mam|LINE|CR1	3913	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
108151	chr18	62581301	62581830	+	0	NA	intron (NR_126534, intron 14 of 14)	intron (NR_126534, intron 14 of 14)	58540	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
229409	chr9	121200701	121202550	+	0	NA	intron (NM_001353053, intron 1 of 25)	CpG	142	NM_001353054	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
161928	chr3	46076901	46077100	+	0	NA	intron (NM_001381860, intron 1 of 3)	LTR56|LTR|ERV1	8844	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
21661	chr1	206692001	206692600	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	7395	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
25669	chr10	8395221	8395480	+	0	NA	Intergenic	Intergenic	-127045	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
159855	chr3	16529251	16529600	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	-6893	NR_103843	100996597		NR_103843	ENSG00000233570	LINC00690	-	long intergenic non-protein coding RNA 690	ncRNA
133636	chr2	126953571	126953730	+	0	NA	Intergenic	LTR40a|LTR|ERVL	54760	NR_136239	101929926		NM_001322244	ENSG00000237524	TEX51	-	testis expressed 51	protein-coding
227957	chr9	94860321	94861830	+	0	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	51113	NR_031755	100313780		NR_031755	ENSG00000252153	MIR2278	mir-2278	microRNA 2278	ncRNA
155732	chr22	39141901	39142830	+	0	NA	intron (NM_001346743, intron 2 of 5)	intron (NM_001346743, intron 2 of 5)	10315	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
89531	chr16	89188501	89189230	+	0	NA	intron (NM_004933, intron 7 of 13)	intron (NM_004933, intron 7 of 13)	11672	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
233130	chr9	137147951	137148050	+	0	NA	intron (NM_007327, intron 3 of 19)	CpG	8846	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
153008	chr22	23194451	23194550	+	0	NA	intron (NM_021574, intron 1 of 21)	AluY|SINE|Alu	13991	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
100960	chr17	64504451	64505700	+	0	NA	intron (NM_004396, intron 1 of 12)	intron (NM_004396, intron 1 of 12)	862	NM_001320597	1655		NM_004396	ENSG00000108654	DDX5	G17P1|HLR1|HUMP68|p68	DEAD-box helicase 5	protein-coding
33862	chr10	124400051	124400550	+	0	NA	intron (NM_001322971, intron 7 of 7)	AluSc5|SINE|Alu	18623	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
5657	chr1	26289701	26291680	+	0	NA	intron (NM_001077262, intron 4 of 10)	GA-rich|Low_complexity|Low_complexity	10604	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
117980	chr19	33408021	33408280	+	0	NA	intron (NM_000285, intron 11 of 14)	intron (NM_000285, intron 11 of 14)	33626	NM_001252296	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
216725	chr8	22427871	22428030	+	0	NA	intron (NM_001135154, intron 8 of 8)	AluJr|SINE|Alu	-13020	NM_001243974	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
34612	chr10	133274071	133276200	+	0	NA	intron (NM_001164490, intron 1 of 19)	intron (NM_001164490, intron 1 of 19)	1733	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
162704	chr3	48994751	48995300	+	0	NA	intron (NM_177939, intron 2 of 8)	AluSq2|SINE|Alu	4784	NM_177939	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
206402	chr7	31023701	31024400	+	0	NA	Intergenic	Intergenic	-28258	NM_001118	117		NM_001118	ENSG00000078549	ADCYAP1R1	PAC1|PAC1R|PACAPR|PACAPRI	ADCYAP receptor type I	protein-coding
77334	chr15	82523851	82523950	+	0	NA	non-coding (NR_111962, exon 6 of 9)	non-coding (NR_111962, exon 6 of 9)	4310	NR_111962	642402		NR_111962		GOLGA6L17P	GOLGA6L21P	golgin A6 family like 17, pseudogene	pseudo
42757	chr11	72726651	72726950	+	0	NA	exon (NM_001040118, exon 3 of 35)	exon (NM_001040118, exon 3 of 35)	-4442	NM_001135190	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
197206	chr6	63634751	63634850	+	0	NA	Intergenic	MIR|SINE|MIR	-1002	NM_001370350	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
6306	chr1	27629451	27629750	+	0	NA	intron (NM_005248, intron 1 of 12)	intron (NM_005248, intron 1 of 12)	-3003	NM_001042729	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
68248	chr14	76984721	76984980	+	0	NA	Intergenic	Intergenic	25212	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
227607	chr9	92739901	92740300	+	0	NA	intron (NM_001003800, intron 1 of 6)	intron (NM_001003800, intron 1 of 6)	24733	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
80414	chr16	2616301	2616800	+	0	NA	intron (NR_015441, intron 3 of 3)	CpG	13166	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
124834	chr2	7732351	7732950	+	0	NA	Intergenic	MER77B|LTR|ERVL	167005	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
63689	chr14	21089271	21089850	+	0	NA	TTS (NM_001102454)	TTS (NM_001102454)	9095	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
15770	chr1	151169771	151169930	+	0	NA	TTS (NM_013353)	TTS (NM_013353)	3706	NR_037937	79005		NM_024041	ENSG00000163156	SCNM1	OFD19	sodium channel modifier 1	protein-coding
152320	chr22	20362221	20362480	+	0	NA	Intergenic	L1PA2|LINE|L1	23437	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
190189	chr5	178207421	178207680	+	0	NA	TTS (NR_103510)	TTS (NR_103510)	3017	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
144541	chr20	35720651	35721450	+	0	NA	intron (NM_184234, intron 9 of 16)	AluSc|SINE|Alu	21210	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
99280	chr17	49755771	49755930	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	8281	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
48861	chr12	12430871	12431430	+	0	NA	intron (NM_058169, intron 2 of 3)	L1ME4b|LINE|L1	74072	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
49452	chr12	24991371	24991850	+	0	NA	Intergenic	Intergenic	5855	NM_001101339	196415		NM_001101339	ENSG00000226397	LINC02909	C12orf77	long intergenic non-protein coding RNA 2909	ncRNA
162953	chr3	49602721	49603580	+	0	NA	intron (NM_003458, intron 1 of 11)	intron (NM_003458, intron 1 of 11)	48673	NM_003458	8927		NM_003458	ENSG00000164061	BSN	ZNF231	bassoon presynaptic cytomatrix protein	protein-coding
176588	chr4	98914101	98914300	+	0	NA	intron (NM_001331017, intron 1 of 7)	AluSg|SINE|Alu	14933	NM_001130678	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
159961	chr3	17514601	17514880	+	0	NA	intron (NM_001349091, intron 1 of 19)	intron (NM_001349091, intron 1 of 19)	185280	NM_001134381	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
188021	chr5	149581101	149582000	+	0	NA	promoter-TSS (NM_001001669)	promoter-TSS (NM_001001669)	52	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
177131	chr4	108109971	108110730	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	56447	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
49234	chr12	19288721	19288980	+	0	NA	intron (NM_019012, intron 12 of 25)	intron (NM_019012, intron 12 of 25)	83525	NM_001256787	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
48168	chr12	7960401	7961380	+	0	NA	Intergenic	Intergenic	-24703	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
198501	chr6	106446001	106446500	+	0	NA	intron (NM_001371242, intron 1 of 21)	intron (NM_001371242, intron 1 of 21)	10998	NR_134603	105377924		NR_134603	ENSG00000282408	LOC105377924	-	uncharacterized LOC105377924	ncRNA
149960	chr21	36383951	36384250	+	0	NA	Intergenic	Intergenic	-1292	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
129138	chr2	65382601	65383400	+	0	NA	intron (NM_181784, intron 1 of 5)	intron (NM_181784, intron 1 of 5)	-16222	NM_001128210	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
182777	chr5	68382521	68382980	+	0	NA	Intergenic	Intergenic	90173	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
115346	chr19	15195351	15196350	+	0	NA	intron (NM_000435, intron 2 of 32)	CpG	5145	NM_000435	4854		NM_000435	ENSG00000074181	NOTCH3	CADASIL|CADASIL1|CASIL|IMF2|LMNS	notch receptor 3	protein-coding
94707	chr17	30704471	30705000	+	0	NA	Intergenic	AluJo|SINE|Alu	-4873	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
48400	chr12	9650471	9652330	+	0	NA	intron (NR_046444, intron 1 of 4)	MSTA|LTR|ERVL-MaLR	3353	NR_002814	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
162603	chr3	48697571	48697730	+	0	NA	intron (NM_016291, intron 1 of 5)	intron (NM_016291, intron 1 of 5)	-11735	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
154540	chr22	36159721	36160100	+	0	NA	intron (NM_030644, intron 1 of 4)	AluSz|SINE|Alu	845	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
84855	chr16	31139671	31140280	+	0	NA	intron (NM_001258291, intron 13 of 13)	AluY|SINE|Alu	-4248	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
126797	chr2	30336001	30336380	+	0	NA	Intergenic	Charlie15a|DNA|hAT-Charlie	-10456	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
142321	chr20	3670171	3670530	+	0	NA	intron (NM_025220, intron 19 of 21)	intron (NM_025220, intron 19 of 21)	-6951	NM_145762	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
210259	chr7	99399571	99400100	+	0	NA	intron (NM_014891, intron 4 of 5)	MIRb|SINE|MIR	8762	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
143288	chr20	25282521	25282850	+	0	NA	intron (NM_002862, intron 12 of 19)	intron (NM_002862, intron 12 of 19)	34600	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
2508	chr1	9697571	9697930	+	0	NA	intron (NM_001350234, intron 2 of 23)	AluSz6|SINE|Alu	6283	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
29960	chr10	73529251	73529690	+	0	NA	3' UTR (NM_001320441, exon 15 of 15)	3' UTR (NM_001320441, exon 15 of 15)	23870	NR_135250	159195		NM_152586	ENSG00000166348	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
114330	chr19	12092051	12092800	+	0	NA	5' UTR (NM_001348165, exon 1 of 3)	5' UTR (NM_001348165, exon 1 of 3)	128	NM_001348165								
136194	chr2	174558751	174559050	+	0	NA	promoter-TSS (NR_104080).8	promoter-TSS (NR_104080).8	-828	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
148694	chr21	6367451	6367550	+	0	NA	Intergenic	L1MB3|LINE|L1	92582	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
234661	chrX	20140151	20140600	+	0	NA	TTS (NR_046592)	TTS (NR_046592)	407	NR_046592	100874078		NR_046592	ENSG00000225037	EIF1AX-AS1	-	EIF1AX antisense RNA 1	ncRNA
211957	chr7	112492301	112492700	+	0	NA	Intergenic	Intergenic	11509	NM_182597	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
149305	chr21	28940121	28940480	+	0	NA	intron (NM_001320766, intron 24 of 28)	intron (NM_001320766, intron 24 of 28)	52577	NM_015565	26046		NM_015565	ENSG00000198862	LTN1	C21orf10|C21orf98|RNF160|ZNF294	listerin E3 ubiquitin protein ligase 1	protein-coding
155811	chr22	39314371	39315700	+	0	NA	TTS (NR_000027)	TTS (NR_000027)	272	NR_000027	116937		NR_000027	ENSG00000209482	SNORD83A	RNU83A|U83A	small nucleolar RNA, C/D box 83A	snoRNA
115891	chr19	16581271	16581950	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-9195	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
228078	chr9	96383171	96384580	+	0	NA	promoter-TSS (NM_001286990)	promoter-TSS (NM_001286990)	-164	NM_007001	11046		NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	solute carrier family 35 member D2	protein-coding
155536	chr22	38707521	38708000	+	0	NA	intron (NM_004286, intron 1 of 11)	intron (NM_004286, intron 1 of 11)	1816	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
128910	chr2	64223171	64223530	+	0	NA	Intergenic	MIR3|SINE|MIR	-5051	NR_120420	100507006		NR_120420		LOC100507006	-	uncharacterized LOC100507006	ncRNA
204504	chr7	4783121	4784280	+	0	NA	exon (NM_001364858, exon 4 of 16)	exon (NM_001364858, exon 4 of 16)	4939	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
124050	chr19	55579371	55579630	+	0	NA	exon (NM_152600, exon 2 of 2)	exon (NM_152600, exon 2 of 2)	1348	NM_152600	163033		NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding
237103	chrX	104136321	104136830	+	0	NA	intron (NM_001012755, intron 1 of 1)	intron (NM_001012755, intron 1 of 1)	-11943	NR_039980	286437		NR_039980		LOC286437	-	uncharacterized LOC286437	ncRNA
29995	chr10	73758201	73758400	+	0	NA	intron (NM_198597, intron 3 of 22)	L2|LINE|L2	13928	NM_198597	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
90643	chr17	1663721	1663980	+	0	NA	intron (NM_006445, intron 24 of 42)	L1MEc|LINE|L1	-13984	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
214087	chr7	143615321	143615780	+	0	NA	intron (NM_001363538, intron 8 of 11)	MER90a|LTR|ERV1	-5424	NM_001365429	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
211607	chr7	105875421	105875700	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	1025	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
130016	chr2	74185601	74186400	+	0	NA	Intergenic	L2b|LINE|L2	-7121	NM_001317110	55233		NM_018221	ENSG00000114978	MOB1A	C2orf6|MABKL1B|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B	MOB kinase activator 1A	protein-coding
145810	chr20	45432301	45433080	+	0	NA	intron (NR_159957, intron 2 of 3)	MLT1H1-int|LTR|ERVL-MaLR	5268	NR_159957	105372631		NR_159957		LOC105372631	-	uncharacterized LOC105372631	ncRNA
121980	chr19	48497851	48497950	+	0	NA	exon (NM_001080434, exon 12 of 16)	exon (NM_001080434, exon 12 of 16)	15289	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
72852	chr15	40240371	40240730	+	0	NA	intron (NM_020168, intron 1 of 10)	intron (NM_020168, intron 1 of 10)	753	NM_020168	56924		NM_020168	ENSG00000137843	PAK6	PAK5	p21 (RAC1) activated kinase 6	protein-coding
73332	chr15	41967071	41967430	+	0	NA	intron (NM_139265, intron 1 of 5)	L2b|LINE|L2	5307	NM_139265	30844		NM_139265	ENSG00000103966	EHD4	PAST4	EH domain containing 4	protein-coding
53169	chr12	58476951	58477050	+	0	NA	Intergenic	L1PA3|LINE|L1	-114702	NR_126341	100506869		NR_126341	ENSG00000258231	LOC100506869	-	uncharacterized LOC100506869	ncRNA
4763	chr1	23526651	23527100	+	0	NA	intron (NM_004091, intron 1 of 6)	(CA)n|Simple_repeat|Simple_repeat	4358	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
24507	chr1	244460221	244460500	+	0	NA	promoter-TSS (NM_001130957)	promoter-TSS (NM_001130957)	-913	NM_001130957	257044		NM_173807	ENSG00000179397	CATSPERE	C10orf101|C1orf101	catsper channel auxiliary subunit epsilon	protein-coding
41157	chr11	65603401	65603850	+	0	NA	intron (NM_002419, intron 8 of 9)	intron (NM_002419, intron 8 of 9)	-7825	NM_033348	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
37864	chr11	33777671	33778550	+	0	NA	Intergenic	Intergenic	3411	NR_120550	101928440		NR_120550	ENSG00000254508	FBXO3-DT	FBXO3-AS1	FBXO3 divergent transcript	ncRNA
106242	chr18	11979351	11979650	+	0	NA	Intergenic	Intergenic	-2007	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
114284	chr19	11596921	11598400	+	0	NA	intron (NM_001290084, intron 1 of 3)	CpG	177	NM_001290085	199692		NM_145295	ENSG00000198551	ZNF627	-	zinc finger protein 627	protein-coding
152599	chr22	21382051	21382350	+	0	NA	Intergenic	Intergenic	-1174	NM_001128633	150221		NM_001128633	ENSG00000183246	RIMBP3C	RIM-BP3.3|RIMBP3.3	RIMS binding protein 3C	protein-coding
112519	chr19	6500351	6500850	+	0	NA	intron (NM_001289130, intron 3 of 3)	AluJo|SINE|Alu	1709	NM_006087	10382		NM_006087	ENSG00000104833	TUBB4A	DYT4|TUBB4|beta-5	tubulin beta 4A class IVa	protein-coding
100305	chr17	59798121	59798780	+	0	NA	intron (NM_030938, intron 7 of 11)	intron (NM_030938, intron 7 of 11)	-42816	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
102003	chr17	74772621	74773250	+	0	NA	non-coding (NR_130954, exon 4 of 6)	non-coding (NR_130954, exon 4 of 6)	3410	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
231260	chr9	129998351	129999530	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	44249	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
181108	chr5	37005971	37006230	+	0	NA	intron (NM_133433, intron 16 of 46)	intron (NM_133433, intron 16 of 46)	129331	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
148793	chr21	8233101	8233990	+	0	NA	intron (NR_003287, intron 1 of 2)	(TCTC)n|Simple_repeat|Simple_repeat	-15960	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
196376	chr6	43251121	43252000	+	0	NA	intron (NM_032538, intron 2 of 14)	intron (NM_032538, intron 2 of 14)	8079	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
9147	chr1	45517401	45517600	+	0	NA	intron (NM_002574, intron 2 of 5)	AluY|SINE|Alu	4384	NM_181697	5052		NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
158463	chr22	50672471	50672850	+	0	NA	promoter-TSS (NM_001372044)	promoter-TSS (NM_001372044)	-163	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
180795	chr5	32279821	32280080	+	0	NA	intron (NM_001294344, intron 1 of 13)	MER1B|DNA|hAT-Charlie	32989	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
32027	chr10	101016121	101016580	+	0	NA	TTS (NM_001351044)	TTS (NM_001351044)	13853	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
95638	chr17	37774621	37774880	+	0	NA	Intergenic	Intergenic	-29691	NM_000458	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
129249	chr2	68368671	68369800	+	0	NA	intron (NM_002664, intron 1 of 8)	MIR|SINE|MIR	3953	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
57693	chr12	122848951	122849480	+	0	NA	intron (NM_001303099, intron 4 of 17)	intron (NM_001303099, intron 4 of 17)	13758	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
36134	chr11	3122171	3123130	+	0	NA	intron (NM_145638, intron 3 of 20)	intron (NM_145638, intron 3 of 20)	42660	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
236944	chrX	100819751	100820620	+	0	NA	promoter-TSS (NM_001306209)	promoter-TSS (NM_001306209)	-178	NM_001306209	1478		NM_001325	ENSG00000101811	CSTF2	CSTF64|CstF-64|XLID113	cleavage stimulation factor subunit 2	protein-coding
234805	chrX	24023871	24024340	+	0	NA	intron (NM_030624, intron 2 of 3)	intron (NM_030624, intron 2 of 3)	3081	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
218709	chr8	58596871	58597050	+	0	NA	intron (NM_003580, intron 21 of 30)	intron (NM_003580, intron 21 of 30)	43699	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
166459	chr3	114218051	114218350	+	0	NA	Intergenic	Intergenic	-18793	NM_001282563	1814		NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
62413	chr13	99294951	99295650	+	0	NA	exon (NM_004951, exon 2 of 2)	exon (NM_004951, exon 2 of 2)	12099	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
185113	chr5	119277821	119278570	+	0	NA	intron (NM_001077654, intron 1 of 1)	MLT1L|LTR|ERVL-MaLR	9436	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
35266	chr11	867651	867950	+	0	NA	TTS (NM_001142676)	TTS (NM_001142676)	23354	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
171916	chr4	849701	849980	+	0	NA	intron (NM_001318134, intron 24 of 24)	CpG	-23711	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
236022	chrX	55056921	55057290	+	0	NA	Intergenic	Intergenic	-17925	NM_001015038	389860		NM_001015038	ENSG00000238269	PAGE2B	CT16.5|GAGEE3|PAGE-2B	PAGE family member 2B	protein-coding
63381	chr13	114057671	114058430	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	19905	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
83497	chr16	27424871	27425230	+	0	NA	intron (NM_181079, intron 2 of 9)	MSTB|LTR|ERVL-MaLR	-2221	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
232307	chr9	134641371	134642050	+	0	NA	promoter-TSS (NM_000093)	promoter-TSS (NM_000093)	-93	NM_000093	1289		NM_000093	ENSG00000130635	COL5A1	EDSC|EDSCL1|FMDMF	collagen type V alpha 1 chain	protein-coding
102309	chr17	75359301	75359700	+	0	NA	intron (NM_203506, intron 2 of 4)	AluJr4|SINE|Alu	46178	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
79024	chr16	64071	64230	+	0	NA	intron (NM_022450, intron 3 of 17)	intron (NM_022450, intron 3 of 17)	8481	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
19506	chr1	175192501	175193780	+	0	NA	promoter-TSS (NM_001319230)	promoter-TSS (NM_001319230)	-153	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
8391	chr1	40387871	40389000	+	0	NA	intron (NM_001198978, intron 1 of 9)	LTR12C|LTR|ERV1	-4910	NM_001198979	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
110515	chr19	2067271	2068450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-16616	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
150595	chr21	43352721	43353200	+	0	NA	Intergenic	MER57F|LTR|ERV1	9389	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
51239	chr12	50926351	50927050	+	0	NA	intron (NM_014033, intron 1 of 1)	L1ME4b|LINE|L1	1685	NM_014033	25840		NM_014033	ENSG00000185432	TMT1A	AAM-B|AAMB|METTL7A	thiol methyltransferase 1A	protein-coding
55231	chr12	101829371	101829830	+	0	NA	intron (NM_024312, intron 1 of 20)	intron (NM_024312, intron 1 of 20)	1359	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
89777	chr16	89472521	89473050	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	17776	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
109772	chr19	1130451	1131300	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	1346	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
225541	chr9	35814571	35815960	+	0	NA	promoter-TSS (NM_032593)	promoter-TSS (NM_032593)	-223	NM_032593	84681		NM_032593	ENSG00000137133	HINT2	HIT-17	histidine triad nucleotide binding protein 2	protein-coding
93751	chr17	19948321	19948580	+	0	NA	intron (NM_007202, intron 4 of 14)	L1MDb|LINE|L1	29378	NM_007202	11216		NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A-kinase anchoring protein 10	protein-coding
65124	chr14	44941001	44941400	+	0	NA	intron (NM_017658, intron 2 of 4)	L2c|LINE|L2	20285	NM_001308112	54813		NM_017658	ENSG00000179454	KLHL28	BTBD5	kelch like family member 28	protein-coding
528	chr1	1224901	1225430	+	0	NA	intron (NM_016547, intron 2 of 6)	intron (NM_016547, intron 2 of 6)	6836	NM_016176	51150		NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
182799	chr5	68739871	68740030	+	0	NA	Intergenic	Intergenic	289977	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
178986	chr4	163331821	163332080	+	0	NA	intron (NM_000909, intron 1 of 2)	CpG	646	NM_000909	4886		NM_000909	ENSG00000164128	NPY1R	NPY1-R|NPYR	neuropeptide Y receptor Y1	protein-coding
30441	chr10	79065771	79065950	+	0	NA	intron (NR_024429, intron 2 of 7)	intron (NR_024429, intron 2 of 7)	1588	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
204165	chr7	2413201	2414200	+	0	NA	intron (NM_018641, intron 1 of 1)	intron (NM_018641, intron 1 of 1)	10089	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
129027	chr2	64939321	64939780	+	0	NA	Intergenic	L2c|LINE|L2	-7103	NR_036586	400958		NR_036586		LINC02245	-	long intergenic non-protein coding RNA 2245	ncRNA
220421	chr8	100285621	100286400	+	0	NA	intron (NM_183419, intron 2 of 9)	MERX|DNA|TcMar-Tigger	16183	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
126779	chr2	30260151	30260800	+	0	NA	TTS (NM_030915)	TTS (NM_030915)	28941	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
51988	chr12	53958671	53958830	+	0	NA	3' UTR (NM_173860, exon 2 of 2)	3' UTR (NM_173860, exon 2 of 2)	3847	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
80889	chr16	3690171	3691200	+	0	NA	intron (NM_001272049, intron 1 of 16)	intron (NM_001272049, intron 1 of 16)	26839	NM_001272049	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
160048	chr3	18443571	18444100	+	0	NA	intron (NM_001322874, intron 1 of 10)	CpG	283	NM_001322875	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
123717	chr19	55044871	55045280	+	0	NA	non-coding (NR_027381, exon 8 of 8).5	non-coding (NR_027381, exon 8 of 8).5	-6811	NM_001256017	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
69895	chr14	99435501	99435700	+	0	NA	intron (NM_032233, intron 6 of 12)	intron (NM_032233, intron 6 of 12)	45259	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
207863	chr7	50364701	50365950	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	46277	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
25361	chr10	6407121	6407650	+	0	NA	intron (NM_001323267, intron 17 of 17)	intron (NM_001323267, intron 17 of 17)	57069	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
69401	chr14	94048651	94050700	+	0	NA	TTS (NM_023112)	TTS (NM_023112)	23335	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
21369	chr1	205121101	205122750	+	0	NA	promoter-TSS (NM_001193273)	promoter-TSS (NM_001193273)	53	NM_001193273	5929		NM_005057	ENSG00000117222	RBBP5	RBQ3|SWD1	RB binding protein 5, histone lysine methyltransferase complex subunit	protein-coding
228934	chr9	113274981	113276680	+	0	NA	promoter-TSS (NM_139286)	promoter-TSS (NM_139286)	172	NM_001322266	9128		NM_004697	ENSG00000136875	PRPF4	HPRP4|HPRP4P|PRP4|Prp4p|RP70|SNRNP60	pre-mRNA splicing tri-snRNP complex factor PRPF4	protein-coding
210883	chr7	101164421	101164700	+	0	NA	exon (NM_003378, exon 2 of 2)	exon (NM_003378, exon 2 of 2)	1009	NM_003378	7425		NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
123689	chr19	55012501	55013130	+	0	NA	TTS (NM_001256017).2	TTS (NM_001256017).2	25449	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
64464	chr14	24252201	24252400	+	0	NA	intron (NM_000359, intron 14 of 14)	intron (NM_000359, intron 14 of 14)	-9626	NM_012461	26277		NM_012461	ENSG00000092330	TINF2	DKCA3|TIN2	TERF1 interacting nuclear factor 2	protein-coding
229224	chr9	114910501	114911550	+	0	NA	intron (NM_001244, intron 2 of 3)	MIRb|SINE|MIR	19566	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
206927	chr7	38226471	38227000	+	0	NA	intron (NM_032016, intron 7 of 8)	L1M4a1|LINE|L1	46912	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
136929	chr2	189799571	189799760	+	0	NA	intron (NM_001289408, intron 3 of 11)	LTR16|LTR|ERVL	15215	NM_001128143	5378		NM_000534	ENSG00000064933	PMS1	HNPCC3|MLH2|PMSL1|hPMS1	PMS1 homolog 1, mismatch repair system component	protein-coding
116008	chr19	17122351	17122650	+	0	NA	intron (NM_004145, intron 2 of 39)	AluSx|SINE|Alu	30265	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
214314	chr7	149245321	149245580	+	0	NA	intron (NM_012256, intron 1 of 4)	intron (NM_012256, intron 1 of 4)	5799	NM_012256	7988		NM_012256	ENSG00000170260	ZNF212	C2H2-150|ZNF182|ZNFC150	zinc finger protein 212	protein-coding
32199	chr10	101770121	101771330	+	0	NA	intron (NM_001206389, intron 4 of 4)	intron (NM_001206389, intron 4 of 4)	5389	NM_033164	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
140772	chr2	235390401	235390830	+	0	NA	Intergenic	MIR3|SINE|MIR	-103428	NM_001037131	116987		NM_014914	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
82472	chr16	17194201	17194480	+	0	NA	intron (NM_022166, intron 5 of 11)	intron (NM_022166, intron 5 of 11)	59836	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
172443	chr4	1913071	1913400	+	0	NA	intron (NM_007331, intron 5 of 10)	LTR13|LTR|ERVK	12609	NM_133334	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
69860	chr14	99267301	99267800	+	0	NA	intron (NM_022898, intron 1 of 2)	intron (NM_022898, intron 1 of 2)	4647	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
218631	chr8	56210731	56212880	+	0	NA	promoter-TSS (NM_001114635)	promoter-TSS (NM_001114635)	16	NM_001011671	79145		NM_024300	ENSG00000170791	CHCHD7	COX23	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding
138360	chr2	203942121	203942750	+	0	NA	intron (NM_012092, intron 1 of 4)	intron (NM_012092, intron 1 of 4)	5672	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123560	chr19	54420451	54421200	+	0	NA	intron (NM_020659, intron 2 of 13).4	intron (NM_020659, intron 2 of 13).4	5361	NM_020659	57348		NM_020659	ENSG00000167614	TTYH1	-	tweety family member 1	protein-coding
94219	chr17	28642401	28642600	+	0	NA	intron (NM_014680, intron 5 of 38)	AluY|SINE|Alu	2658	NM_001321560	9703		NM_014680	ENSG00000007202	BLTP2	BCOX|BCOX1|CT101|FMP27|Hob|KIAA0100	bridge-like lipid transfer protein family member 2	protein-coding
54786	chr12	94207801	94208830	+	0	NA	intron (NM_005761, intron 4 of 30)	intron (NM_005761, intron 4 of 30)	-54304	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
15934	chr1	151820121	151820380	+	0	NA	intron (NM_005060, intron 2 of 10)	intron (NM_005060, intron 2 of 10)	5846	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
74116	chr15	55077101	55077380	+	0	NA	intron (NR_135679, intron 1 of 1)	L1PB1|LINE|L1	20493	NR_135679	105370829		NR_135679	ENSG00000260937	LOC105370829	-	uncharacterized LOC105370829	ncRNA
185736	chr5	132082951	132083730	+	0	NA	Intergenic	Intergenic	9551	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
58120	chr12	124886321	124886580	+	0	NA	Intergenic	AluSx|SINE|Alu	-22586	NM_001082959	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
219095	chr8	65877771	65877930	+	0	NA	Intergenic	Intergenic	-35786	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
132231	chr2	102351501	102351900	+	0	NA	exon (NM_016232, exon 11 of 11)	exon (NM_016232, exon 11 of 11)	-4096	NM_001371419	8809		NM_003855	ENSG00000115604	IL18R1	CD218a|CDw218a|IL-18R-alpha|IL-18Ralpha|IL-1Rrp|IL18RA|IL18Ralpha2|IL1RRP	interleukin 18 receptor 1	protein-coding
88008	chr16	80997201	80998030	+	0	NA	promoter-TSS (NM_001351973)	promoter-TSS (NM_001351973)	61	NM_001351973	56942		NM_020188	ENSG00000103121	CMC2	2310061C15Rik|C16orf61|DC13	C-X9-C motif containing 2	protein-coding
27041	chr10	27023351	27023850	+	0	NA	intron (NM_014915, intron 28 of 33)	intron (NM_014915, intron 28 of 33)	76894	NM_014915	22852		NM_014915	ENSG00000107890	ANKRD26	THC2|bA145E8.1	ankyrin repeat domain containing 26	protein-coding
54053	chr12	75960271	75960430	+	0	NA	Intergenic	Intergenic	71426	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
49950	chr12	40137121	40137800	+	0	NA	Intergenic	Intergenic	-18779	NR_146526	105369734		NR_146526		LINC02471	-	long intergenic non-protein coding RNA 2471	ncRNA
76174	chr15	73051551	73053500	+	0	NA	promoter-TSS (NM_002499)	promoter-TSS (NM_002499)	41	NM_001172623	4756		NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
82734	chr16	21289971	21290130	+	0	NA	intron (NM_001888, intron 1 of 9)	LTR12|LTR|ERV1	-10799	NR_026675	400508		NM_001101368		CRYM-AS1	NCRNA00169	CRYM antisense RNA 1	ncRNA
129276	chr2	68417651	68418300	+	0	NA	Intergenic	Intergenic	49319	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
171662	chr3	197674951	197675250	+	0	NA	promoter-TSS (NR_030627)	promoter-TSS (NR_030627)	-524	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
180822	chr5	32446871	32447030	+	0	NA	Intergenic	Intergenic	-2210	NR_144318	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
68112	chr14	75427401	75428650	+	0	NA	promoter-TSS (NM_130469)	promoter-TSS (NM_130469)	3	NM_001135048	122953		NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
56685	chr12	120015211	120015830	+	0	NA	intron (NR_147894, intron 3 of 8)	intron (NR_147894, intron 3 of 8)	25676	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
155084	chr22	37563171	37563330	+	0	NA	intron (NM_152243, intron 1 of 2)	intron (NM_152243, intron 1 of 2)	2770	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
189611	chr5	175966771	175966930	+	0	NA	intron (NM_032361, intron 2 of 5)	L2c|LINE|L2	1465	NM_001376902	84321		NM_032361	ENSG00000051596	THOC3	THO3|hTREX45	THO complex subunit 3	protein-coding
48371	chr12	9440201	9440400	+	0	NA	intron (NR_033399, intron 2 of 26)	L4_A_Mam|LINE|RTE-X	7872	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
196349	chr6	43212151	43212250	+	0	NA	intron (NM_015089, intron 26 of 40)	L1MC5a|LINE|L1	17281	NM_199184	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
101130	chr17	65034971	65035580	+	0	NA	intron (NM_001282425, intron 2 of 3)	L4_A_Mam|LINE|RTE-X	20499	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
44015	chr11	94926221	94926480	+	0	NA	Intergenic	Intergenic	47206	NM_016403	51503		NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
32397	chr10	102431721	102434050	+	0	NA	promoter-TSS (NM_024040)	promoter-TSS (NM_024040)	-311	NM_024040	79004		NM_024040	ENSG00000107874	CUEDC2	C10orf66|bA18I14.5	CUE domain containing 2	protein-coding
232665	chr9	136504721	136504980	+	0	NA	exon (NM_017617, exon 26 of 34)	exon (NM_017617, exon 26 of 34)	14776	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
39145	chr11	52883051	52883150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1720898	NM_001004703	119749		NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
201636	chr6	149458771	149458930	+	0	NA	intron (NM_207360, intron 3 of 5)	L1ME3E|LINE|L1	26164	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
62849	chr13	110222271	110222500	+	0	NA	intron (NM_001845, intron 2 of 51)	intron (NM_001845, intron 2 of 51)	84772	NM_001303110	1282		NM_001845	ENSG00000187498	COL4A1	BSVD|BSVD1|COL4A1s|PADMAL|RATOR	collagen type IV alpha 1 chain	protein-coding
48902	chr12	12555671	12556030	+	0	NA	intron (NM_030640, intron 1 of 6)	AluJo|SINE|Alu	7013	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
45896	chr11	120325101	120325880	+	0	NA	intron (NM_001198675, intron 1 of 1)	CpG	191	NM_001198675	219902		NM_174926	ENSG00000181264	TLCD5	TMEM136	TLC domain containing 5	protein-coding
21167	chr1	203763401	203763930	+	0	NA	Intergenic	Intergenic	-1518	NM_001136190	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
200533	chr6	136252051	136252150	+	0	NA	Intergenic	Intergenic	-1789	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
75597	chr15	67099671	67100200	+	0	NA	intron (NM_005902, intron 1 of 8)	AluSq2|SINE|Alu	-25781	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
118265	chr19	35263351	35263830	+	0	NA	intron (NM_205834, intron 5 of 9)	AluJr|SINE|Alu	-5372	NM_001321150	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
89257	chr16	88656521	88656800	+	0	NA	intron (NM_002461, intron 4 of 9)	intron (NM_002461, intron 4 of 9)	-5607	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
145204	chr20	38897651	38897950	+	0	NA	intron (NM_001172735, intron 4 of 9)	L1MB3|LINE|L1	-28617	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
50953	chr12	49537221	49538300	+	0	NA	Intergenic	Intergenic	-1270	NM_001314030	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
178578	chr4	151138851	151139350	+	0	NA	intron (NM_001378121, intron 14 of 20)	AluSq2|SINE|Alu	35273	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
93271	chr17	18086221	18086680	+	0	NA	Intergenic	AluJb|SINE|Alu	-1498	NM_001330144	1819		NM_001388	ENSG00000108591	DRG2	-	developmentally regulated GTP binding protein 2	protein-coding
60105	chr13	36998371	36999800	+	0	NA	intron (NM_001142364, intron 1 of 8)	intron (NM_001142364, intron 1 of 8)	255	NM_013338	29880		NM_013338	ENSG00000120697	ALG5	PKD7|bA421P11.2	ALG5 dolichyl-phosphate beta-glucosyltransferase	protein-coding
33372	chr10	117353621	117354080	+	0	NA	intron (NM_173791, intron 1 of 4)	intron (NM_173791, intron 1 of 4)	21590	NM_173791	118987		NM_173791	ENSG00000165650	PDZD8	IDDADF|PDZK8	PDZ domain containing 8	protein-coding
5422	chr1	25552271	25553250	+	0	NA	intron (NM_015627, intron 1 of 8)	intron (NM_015627, intron 1 of 8)	9154	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
154718	chr22	36447551	36448430	+	0	NA	Intergenic	Intergenic	33650	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
114798	chr19	13786801	13787000	+	0	NA	Intergenic	Intergenic	-8543	NM_001367834	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
232801	chr9	136709371	136709530	+	0	NA	Intergenic	Intergenic	-3122	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
33901	chr10	124529521	124530730	+	0	NA	intron (NM_022126, intron 6 of 6)	(CCTG)n|Simple_repeat|Simple_repeat	68302	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
224429	chr9	15295651	15297450	+	0	NA	intron (NM_152574, intron 1 of 19)	AluSq2|SINE|Alu	10810	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
165125	chr3	71717851	71718800	+	0	NA	intron (NM_173359, intron 2 of 7)	intron (NM_173359, intron 2 of 7)	7077	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
168362	chr3	141894751	141894850	+	0	NA	intron (NM_001679, intron 1 of 6)	Tigger3b|DNA|TcMar-Tigger	18157	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
163885	chr3	52512921	52513380	+	0	NA	exon (NM_015136, exon 30 of 69)	exon (NM_015136, exon 30 of 69)	17812	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
60498	chr13	41316371	41316530	+	0	NA	intron (NM_024561, intron 1 of 19)	AluSz|SINE|Alu	-4412	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
27610	chr10	32903301	32903500	+	0	NA	intron (NM_133376, intron 15 of 15)	intron (NM_133376, intron 15 of 15)	-1928	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
40915	chr11	65206351	65206850	+	0	NA	exon (NM_005186, exon 13 of 22)	exon (NM_005186, exon 13 of 22)	-7240	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
185360	chr5	127320551	127320650	+	0	NA	intron (NM_001308119, intron 2 of 14)	intron (NM_001308119, intron 2 of 14)	29804	NM_032446	84466		NM_032446	ENSG00000145794	MEGF10	CMYP10A|CMYP10B|EMARDD|SR-F3	multiple EGF like domains 10	protein-coding
85153	chr16	46399351	46400930	+	0	NA	Intergenic	Intergenic	168957	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
92567	chr17	9005921	9006780	+	0	NA	Intergenic	Intergenic	-15160	NM_004822	9423		NM_004822	ENSG00000065320	NTN1	MRMV4|NET1|NTN1L	netrin 1	protein-coding
105401	chr17	82757721	82758630	+	0	NA	intron (NM_005993, intron 2 of 38)	AluSq2|SINE|Alu	6110	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
138736	chr2	213251521	213251860	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	32519	NR_161186	100130451		NR_144752		SPAG16-DT	-	SPAG16 divergent transcript	ncRNA
187599	chr5	142924171	142924950	+	0	NA	intron (NR_146198, intron 10 of 22)	MIR|SINE|MIR	-55650	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
88173	chr16	81712551	81712950	+	0	NA	TTS (NM_198390)	TTS (NM_198390)	47396	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
225325	chr9	34614901	34615300	+	0	NA	intron (NM_001281425, intron 3 of 5)	intron (NM_001281425, intron 3 of 5)	-3003	NM_148179	138716		NM_148178	ENSG00000164967	RPP25L	C9orf23|bA296L22.5	ribonuclease P/MRP subunit p25 like	protein-coding
202161	chr6	155303421	155303680	+	0	NA	intron (NR_146725, intron 2 of 8)	intron (NR_146725, intron 2 of 8)	10934	NM_001350501	51106		NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
228162	chr9	96972351	96972650	+	0	NA	intron (NM_001355229, intron 2 of 4)	MER1B|DNA|hAT-Charlie	41105	NM_001355229	84278		NM_001355228	ENSG00000290770	MFSD14CP	HIATL2|MFSD14C	major facilitator superfamily domain containing 14C, pseudogene	pseudo
47294	chr12	1661451	1663550	+	0	NA	Intergenic	CpG	-2120	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
211365	chr7	104995921	104996180	+	0	NA	Intergenic	Intergenic	-4885	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
117719	chr19	29459501	29459700	+	0	NA	intron (NR_040029, intron 1 of 9)	L1PA2|LINE|L1	-65818	NM_001384641	342865		NM_001146339	ENSG00000187135	VSTM2B	-	V-set and transmembrane domain containing 2B	protein-coding
157799	chr22	46777251	46777900	+	0	NA	intron (NM_001284305, intron 1 of 12)	intron (NM_001284305, intron 1 of 12)	3648	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
193539	chr6	30603251	30603350	+	0	NA	intron (NM_001376195, intron 16 of 19).6	intron (NM_001376195, intron 16 of 19).6	13943	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
203458	chr7	435101	435300	+	0	NA	intron (NR_165239, intron 1 of 1)	intron (NR_165239, intron 1 of 1)	-3399	NR_165236	112267991		NR_165236		LOC112267991	-	uncharacterized LOC112267991	ncRNA
983	chr1	1825971	1826330	+	0	NA	intron (NM_001282539, intron 1 of 10)	AluSz|SINE|Alu	-46119	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
23237	chr1	227773751	227775030	+	0	NA	intron (NR_136655, intron 5 of 5)	intron (NR_136655, intron 5 of 5)	-12422	NR_168381	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
147469	chr20	59081921	59082300	+	0	NA	Intergenic	Intergenic	-39264	NR_037929	100533975		NR_037929		SLMO2-ATP5E	-	SLMO2-ATP5E readthrough	ncRNA
144416	chr20	35306871	35307230	+	0	NA	intron (NM_199487, intron 7 of 8)	intron (NM_199487, intron 7 of 8)	-14625	NM_178468	128876		NM_178468	ENSG00000125998	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83 member C	protein-coding
213812	chr7	141052771	141052930	+	0	NA	Intergenic	Intergenic	-21214	NM_001195278	100507421		NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
61602	chr13	73216451	73216550	+	0	NA	Intergenic	Intergenic	157495	NM_001730	688		NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	KLF transcription factor 5	protein-coding
114766	chr19	13730201	13730400	+	0	NA	Intergenic	Intergenic	-1452	NM_001320566	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
198628	chr6	107783951	107784050	+	0	NA	intron (NM_198081, intron 1 of 7)	LTR33A_|LTR|ERVL	40313	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
86799	chr16	67828251	67828600	+	0	NA	TTS (NM_018430)	TTS (NM_018430)	-13895	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
191425	chr6	10423251	10424050	+	0	NA	Intergenic	Intergenic	-3590	NM_001042425	7020		NM_003220	ENSG00000137203	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha	protein-coding
40727	chr11	64812251	64812650	+	0	NA	Intergenic	AluJr|SINE|Alu	-1156	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
87262	chr16	69974621	69975080	+	0	NA	Intergenic	AluJr|SINE|Alu	23737	NM_001370523	348174		NM_182619	ENSG00000157322	CLEC18A	MRCL|MRCL1|MRLP2	C-type lectin domain family 18 member A	protein-coding
69529	chr14	96393371	96393550	+	0	NA	intron (NM_001350891, intron 1 of 16)	MLT1C|LTR|ERVL-MaLR	1332	NM_001350888	122481		NM_152327	ENSG00000140057	AK7	AK 7|CFAP75|FAP75|SPGF27	adenylate kinase 7	protein-coding
156052	chr22	39982451	39982780	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12339	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
146714	chr20	50587121	50587380	+	0	NA	exon (NM_001290268, exon 22 of 22)	exon (NM_001290268, exon 22 of 22)	1464	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
116464	chr19	18090201	18090400	+	0	NA	intron (NM_001290024, intron 1 of 17)	AluJr|SINE|Alu	-3366	NM_153701	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
149667	chr21	33578801	33579530	+	0	NA	intron (NM_017613, intron 9 of 9)	intron (NM_017613, intron 9 of 9)	9519	NM_017613	29980		NM_017613	ENSG00000159147	DONSON	B17|C21orf60|MIMIS|MISSLA	DNA replication fork stabilization factor DONSON	protein-coding
96310	chr17	39964701	39964900	+	0	NA	intron (NM_178171, intron 1 of 11)	intron (NM_178171, intron 1 of 11)	1796	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
58731	chr12	132592251	132593030	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	10643	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
38766	chr11	47164301	47164750	+	0	NA	TTS (NM_001003678)	TTS (NM_001003678)	12354	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
184518	chr5	100922851	100922950	+	0	NA	Intergenic	L1PBa|LINE|L1	-19618	NM_175052	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
53678	chr12	68449671	68450050	+	0	NA	intron (NR_120458, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	1624	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
133755	chr2	127575501	127576100	+	0	NA	intron (NM_001080527, intron 7 of 46)	AluJo|SINE|Alu	-4838	NR_132317	105373609		NR_132317		LOC105373609	-	uncharacterized LOC105373609	ncRNA
79394	chr16	663501	663900	+	0	NA	intron (NM_145294, intron 34 of 40)	intron (NM_145294, intron 34 of 40)	-4383	NM_001352287	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
81840	chr16	11583121	11583400	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	3113	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
126746	chr2	30224951	30225730	+	0	NA	Intergenic	Intergenic	-6194	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
45351	chr11	118241021	118242050	+	0	NA	intron (NM_198275, intron 1 of 5)	MIR|SINE|MIR	10830	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
230580	chr9	128556021	128557930	+	0	NA	intron (NM_001375312, intron 2 of 57)	intron (NM_001375312, intron 2 of 57)	4388	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
41359	chr11	65968751	65969280	+	0	NA	intron (NM_005146, intron 12 of 19)	intron (NM_005146, intron 12 of 19)	7281	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
137061	chr2	190896821	190897580	+	0	NA	intron (NM_014905, intron 3 of 17)	AluSx1|SINE|Alu	16379	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
53367	chr12	64665421	64667080	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-43645	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
175041	chr4	52825151	52825650	+	0	NA	Intergenic	Intergenic	35406	NR_040106	152578		NR_040106	ENSG00000250302	LINC01618	-	long intergenic non-protein coding RNA 1618	ncRNA
36515	chr11	6437971	6438350	+	0	NA	intron (NM_000613, intron 5 of 9)	intron (NM_000613, intron 5 of 9)	2827	NM_000613	3263		NM_000613	ENSG00000110169	HPX	HX	hemopexin	protein-coding
22949	chr1	225996001	225996200	+	0	NA	intron (NM_152608, intron 1 of 6)	L2|LINE|L2	3243	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
227650	chr9	92962871	92963030	+	0	NA	intron (NM_001083536, intron 1 of 17)	AluSx1|SINE|Alu	-1011	NM_001286993	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
208184	chr7	64888921	64889430	+	0	NA	intron (NM_001385649, intron 1 of 5)	CpG	6662	NM_001385645	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
119489	chr19	40460021	40460480	+	0	NA	intron (NM_000713, intron 1 of 4)	(AT)n|Simple_repeat|Simple_repeat	5495	NM_000713	645		NM_000713	ENSG00000090013	BLVRB	BVRB|FLR|HEL-S-10|SDR43U1	biliverdin reductase B	protein-coding
131183	chr2	94815251	94815350	+	0	NA	non-coding (NR_003366, exon 13 of 24)	non-coding (NR_003366, exon 13 of 24)	41775	NR_003366	729171		NR_003366	ENSG00000229089	ANKRD20A8P	ANKRD20B	ankyrin repeat domain 20 family member A8, pseudogene	pseudo
127156	chr2	37892221	37893280	+	0	NA	Intergenic	MER34A1|LTR|ERV1	-16887	NR_110012	101929559		NR_110011	ENSG00000237803	PIRAT1	LINC00211|NCRNA00211|PIRAT	PU.1 (SPI1) induced regulator of S100A8 and S100A9 alarmin transcription 1	ncRNA
134235	chr2	134930721	134931380	+	0	NA	intron (NR_135468, intron 2 of 9)	AluY|SINE|Alu	12228	NM_001320749	905		NM_001241	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
155317	chr22	38206821	38208300	+	0	NA	intron (NM_001161573, intron 1 of 2)	AluYh3|SINE|Alu	4540	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
115397	chr19	15278051	15278900	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluSz|SINE|Alu	1976	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
35480	chr11	1506621	1506880	+	0	NA	Intergenic	Intergenic	-19971	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
161551	chr3	42659901	42660100	+	0	NA	intron (NM_145166, intron 2 of 5)	intron (NM_145166, intron 2 of 5)	-5612	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
100667	chr17	63740801	63743650	+	0	NA	promoter-TSS (NM_153335)	promoter-TSS (NM_153335)	-239	NM_001165970	92335		NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk	STE20 related adaptor alpha	protein-coding
230669	chr9	128712601	128713000	+	0	NA	intron (NM_001317926, intron 6 of 21)	intron (NM_001317926, intron 6 of 21)	10297	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
192202	chr6	17706601	17707580	+	0	NA	promoter-TSS (NM_001278210)	promoter-TSS (NM_001278210)	47	NR_134618	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
117687	chr19	27802371	27802530	+	0	NA	intron (NR_146736, intron 2 of 2)	LTR13|LTR|ERVK	-8510	NR_027301	148189		NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	ncRNA
227900	chr9	94014071	94014330	+	0	NA	Intergenic	Intergenic	-16613	NM_177995	138639		NM_152422	ENSG00000158079	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
432	chr1	1102671	1103030	+	0	NA	intron (NM_017891, intron 1 of 9)	AluSq2|SINE|Alu	13239	NM_017891	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
87591	chr16	73070801	73071000	+	0	NA	Intergenic	Intergenic	-11879	NM_001164766	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
146613	chr20	50151621	50152100	+	0	NA	intron (NR_027889, intron 1 of 6)	AluY|SINE|Alu	1863	NM_001162505	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
138113	chr2	202283171	202283600	+	0	NA	intron (NM_015934, intron 4 of 14)	AluSx1|SINE|Alu	5272	NR_145774	109616995		NR_145774	ENSG00000212309	SNORD70B	-	small nucleolar RNA, C/D box 70B	snoRNA
124444	chr19	58503051	58503500	+	0	NA	intron (NM_001321196, intron 3 of 9)	intron (NM_001321196, intron 3 of 9)	8717	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
196043	chr6	42047371	42047530	+	0	NA	intron (NM_001287434, intron 1 of 4)	intron (NM_001287434, intron 1 of 4)	1444	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
201114	chr6	142867251	142867550	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	77776	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
214035	chr7	143308321	143308780	+	0	NA	TTS (NM_032983)	TTS (NM_032983)	-7561	NR_046453	1180		NM_000083	ENSG00000188037	CLCN1	CLC1	chloride voltage-gated channel 1	protein-coding
194212	chr6	32187751	32187850	+	0	NA	intron (NM_002586, intron 4 of 8).6	intron (NM_002586, intron 4 of 8).6	2402	NM_002586	5089		NM_002586	ENSG00000204304	PBX2	G17|HOX12|PBX2MHC	PBX homeobox 2	protein-coding
95518	chr17	36543721	36545100	+	0	NA	promoter-TSS (NM_024835)	promoter-TSS (NM_024835)	-509	NM_024835	79893		NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
72647	chr15	38497951	38498250	+	0	NA	intron (NM_001128602, intron 14 of 15)	intron (NM_001128602, intron 14 of 15)	43973	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
215433	chr7	157685151	157685650	+	0	NA	intron (NM_130842, intron 11 of 21)	CpG	-110978	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
26129	chr10	13743301	13743500	+	0	NA	intron (NM_018027, intron 9 of 24)	intron (NM_018027, intron 9 of 24)	-35833	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
137783	chr2	199470151	199470400	+	0	NA	non-coding (NR_026830, exon 2 of 2)	non-coding (NR_026830, exon 2 of 2)	991	NM_015265	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
121756	chr19	47755301	47755900	+	0	NA	promoter-TSS (NR_003048)	promoter-TSS (NR_003048)	-253	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
98146	chr17	46024651	46025300	+	0	NA	non-coding (NR_165166, exon 10 of 10)	non-coding (NR_165166, exon 10 of 10)	25725	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
206469	chr7	32992201	32993030	+	0	NA	intron (NM_001284341, intron 7 of 10)	intron (NM_001284341, intron 7 of 10)	13141	NM_001284343	11328		NM_007270	ENSG00000122642	FKBP9	FKBP60|FKBP63|PPIase	FKBP prolyl isomerase 9	protein-coding
173607	chr4	10780851	10780950	+	0	NA	Intergenic	L1PA2|LINE|L1	-96132	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
136467	chr2	177189821	177190280	+	0	NA	Intergenic	AluSp|SINE|Alu	22361	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
78249	chr15	90793401	90793600	+	0	NA	intron (NM_001287248, intron 15 of 21)	MER119|DNA|hAT-Charlie	-75088	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
217261	chr8	27319801	27320630	+	0	NA	intron (NM_173174, intron 3 of 35)	MER61A|LTR|ERV1	-2187	NM_004103	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
194983	chr6	35363471	35363630	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	20992	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
200281	chr6	132761901	132762700	+	0	NA	intron (NM_078488, intron 1 of 7)	intron (NM_078488, intron 1 of 7)	1155	NM_078488	8875		NM_004665	ENSG00000112303	VNN2	FOAP-4|GPI-80	vanin 2	protein-coding
12894	chr1	110347451	110348200	+	0	NA	Intergenic	Intergenic	8448	NM_022768	64783		NM_014092	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding
186313	chr5	134582001	134582580	+	0	NA	3' UTR (NM_015288, exon 11 of 11)	3' UTR (NM_015288, exon 11 of 11)	50538	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
31938	chr10	100637951	100638050	+	0	NA	Intergenic	Intergenic	-97396	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
128848	chr2	63851901	63852100	+	0	NA	intron (NM_001377529, intron 2 of 11)	MLT1L|LTR|ERVL-MaLR	10104	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
85335	chr16	50154721	50155080	+	0	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	1594	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
117552	chr19	21028201	21028830	+	0	NA	intron (NM_025189, intron 2 of 4)	intron (NM_025189, intron 2 of 4)	7858	NM_025189	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
224355	chr9	7121121	7121580	+	0	NA	intron (NR_148677, intron 18 of 21)	MLT1H|LTR|ERVL-MaLR	363377	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
65752	chr14	53613671	53613830	+	0	NA	Intergenic	Intergenic	334734	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	ncRNA
166541	chr3	115092171	115092550	+	0	NA	intron (NM_001348800, intron 1 of 11)	intron (NM_001348800, intron 1 of 11)	7948	NM_001348805	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
207714	chr7	47404101	47404300	+	0	NA	intron (NM_022748, intron 13 of 30)	intron (NM_022748, intron 13 of 30)	60603	NR_145813	109623468		NR_145813		SNORD151	-	small nucleolar RNA, C/D box 151	snoRNA
150407	chr21	42369971	42370150	+	0	NA	Intergenic	Intergenic	-3525	NM_003225	7031		NM_003225	ENSG00000160182	TFF1	BCEI|D21S21|HP1.A|HPS2|pNR-2|pS2	trefoil factor 1	protein-coding
14584	chr1	145191111	145191950	+	0	NA	intron (NR_156690, intron 1 of 3)	LTR73|LTR|ERV1	-23321	NR_148945	100996740		NR_148945		LOC100996740	-	uncharacterized LOC100996740	ncRNA
31289	chr10	92571001	92571600	+	0	NA	intron (NM_001322795, intron 1 of 25)	AluSx1|SINE|Alu	2206	NM_001322796	3416		NM_004969	ENSG00000119912	IDE	INSULYSIN	insulin degrading enzyme	protein-coding
41217	chr11	65672151	65672750	+	0	NA	Intergenic	L1MB3|LINE|L1	-9478	NM_001243985	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
193300	chr6	30078721	30078980	+	0	NA	Intergenic	Intergenic	-2999	NM_025236	80352		NM_025236	ENSG00000204618	RNF39	FAP216|HZF|HZFW|LIRF	ring finger protein 39	protein-coding
35281	chr11	937871	938230	+	0	NA	intron (NR_144509, intron 1 of 20)	intron (NR_144509, intron 1 of 20)	12180	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
173957	chr4	25917121	25917580	+	0	NA	intron (NM_001145432, intron 1 of 2)	MIRb|SINE|MIR	3158	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
67640	chr14	73062671	73063030	+	0	NA	intron (NM_021239, intron 1 of 18)	AluSz|SINE|Alu	4316	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
63366	chr13	114045301	114045650	+	0	NA	intron (NM_001320822, intron 3 of 23).2	intron (NM_001320822, intron 3 of 23).2	32480	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
145948	chr20	46089241	46090550	+	0	NA	promoter-TSS (NM_001348151)	promoter-TSS (NM_001348151)	67	NM_001348148	57727		NM_020967	ENSG00000124160	NCOA5	CIA|bA465L10.6	nuclear receptor coactivator 5	protein-coding
195176	chr6	36024201	36024830	+	0	NA	promoter-TSS (NM_138718)	promoter-TSS (NM_138718)	-15	NM_138718	116369		NM_052961	ENSG00000112053	SLC26A8	AZON|SPGF3|TAT1	solute carrier family 26 member 8	protein-coding
95382	chr17	35888851	35890200	+	0	NA	Intergenic	LTR8|LTR|ERV1	-9165	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
229462	chr9	121736501	121736700	+	0	NA	intron (NM_032552, intron 3 of 16)	CpG	-6185	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
191053	chr6	3256901	3257300	+	0	NA	Intergenic	L2c|LINE|L2	-1847	NM_001135750	389362		NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
180926	chr5	34523201	34523450	+	0	NA	Intergenic	Intergenic	-133003	NM_001145522	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
54761	chr12	94101201	94101800	+	0	NA	Intergenic	Intergenic	-47077	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
218566	chr8	54469951	54470250	+	0	NA	Intergenic	CpG	12165	NM_022454	64321		NM_022454	ENSG00000164736	SOX17	VUR3	SRY-box transcription factor 17	protein-coding
189367	chr5	172596951	172597250	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-38086	NR_146726	105377728		NR_146726	ENSG00000254299	LINC01944	CTB-54I1.1	long intergenic non-protein coding RNA 1944	ncRNA
28142	chr10	43443201	43443400	+	0	NA	intron (NM_001355444, intron 1 of 3)	AluSq2|SINE|Alu	6189	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
111119	chr19	3222801	3223200	+	0	NA	Intergenic	L2a|LINE|L2	-1661	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
151199	chr21	45109201	45110350	+	0	NA	intron (NM_001346688, intron 1 of 11)	intron (NM_001346688, intron 1 of 11)	34724	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
120554	chr19	44958451	44958750	+	0	NA	intron (NM_001294, intron 1 of 13)	AluSx1|SINE|Alu	3220	NM_001294	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
223131	chr8	143487751	143487850	+	0	NA	intron (NM_015117, intron 4 of 11)	CpG	18448	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
36412	chr11	4091821	4092880	+	0	NA	non-coding (NR_168437, exon 11 of 11)	non-coding (NR_168437, exon 11 of 11)	-2335	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
200000	chr6	128516601	128517080	+	0	NA	intron (NM_001291981, intron 1 of 32).2	intron (NM_001291981, intron 1 of 32).2	3759	NM_001291982	5796		NM_002844	ENSG00000152894	PTPRK	R-PTP-kappa	protein tyrosine phosphatase receptor type K	protein-coding
139413	chr2	222652321	222652830	+	0	NA	intron (NM_005687, intron 1 of 16)	MLT1F2|LTR|ERVL-MaLR	3517	NM_005687	10056		NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC|RILDBC1|RJBS	phenylalanyl-tRNA synthetase subunit beta	protein-coding
110501	chr19	2049401	2050400	+	0	NA	intron (NM_199054, intron 2 of 13)	(AC)n|Simple_repeat|Simple_repeat	1344	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
59704	chr13	29593601	29593900	+	0	NA	intron (NM_003045, intron 1 of 12)	intron (NM_003045, intron 1 of 12)	1938	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
76222	chr15	73926051	73926350	+	0	NA	promoter-TSS (NM_005576)	promoter-TSS (NM_005576)	-262	NM_005576	4016		NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase like 1	protein-coding
137684	chr2	197479651	197479950	+	0	NA	Intergenic	Intergenic	7103	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
182508	chr5	65033901	65034400	+	0	NA	Intergenic	Intergenic	265220	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
88713	chr16	85928471	85928630	+	0	NA	Intergenic	Intergenic	10203	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
34736	chr10	133689401	133690080	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-62945	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
4751	chr1	23487901	23488100	+	0	NA	Intergenic	L2c|LINE|L2	-3821	NM_017707	55616		NM_017707	ENSG00000088280	ASAP3	ACAP4|CENTB6|DDEFL1|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding
135394	chr2	160506651	160507380	+	0	NA	Intergenic	AluSg|SINE|Alu	-13208	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
151042	chr21	44646671	44647030	+	0	NA	exon (NM_198692, exon 1 of 1)	exon (NM_198692, exon 1 of 1)	436	NM_198692	386678		NM_198692	ENSG00000243489	KRTAP10-11	KAP10.11|KAP10.9|KAP18-9|KAP18.11|KRTAP10-9|KRTAP10.9|KRTAP18-11|KRTAP18-9|KRTAP18.11|KRTAP18.9	keratin associated protein 10-11	protein-coding
73688	chr15	44883451	44883550	+	0	NA	promoter-TSS (NR_146393)	promoter-TSS (NR_146393)	-881	NR_146393	653381		NR_146393	ENSG00000290387	SORD2P	SORD2	sorbitol dehydrogenase 2, pseudogene	pseudo
87802	chr16	75515651	75515750	+	0	NA	Intergenic	AluSp|SINE|Alu	-20259	NR_163480	4166		NM_021615	ENSG00000183196	CHST6	C-GlcNAc6ST|GST4-beta|MCDC1|glcNAc6ST-5|gn6st-5|hCGn6ST	carbohydrate sulfotransferase 6	protein-coding
118189	chr19	35124271	35125380	+	0	NA	TTS (NM_021910)	TTS (NM_021910)	2125	NR_106947	102466205		NR_106947	ENSG00000284065	MIR6887	hsa-mir-6887	microRNA 6887	ncRNA
209484	chr7	76609251	76610250	+	0	NA	TTS (NM_012230)	TTS (NM_012230)	17553	NM_012230	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
22819	chr1	224851501	224851800	+	0	NA	Intergenic	Intergenic	-78004	NM_144989	127602		NM_001373	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein axonemal heavy chain 14	protein-coding
192028	chr6	16437971	16438400	+	0	NA	intron (NM_000332, intron 7 of 8)	MER1B|DNA|hAT-Charlie	199598	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
229575	chr9	123336671	123336830	+	0	NA	Intergenic	Intergenic	-19447	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
207613	chr7	44984051	44984600	+	0	NA	intron (NR_152597, intron 1 of 2)	LTR40b|LTR|ERVL	1185	NR_002952	677798		NR_002952	ENSG00000277184	SNORA9	ACA9|SNORA9A	small nucleolar RNA, H/ACA box 9	snoRNA
25386	chr10	6494801	6496080	+	0	NA	intron (NM_001282644, intron 7 of 17)	L2b|LINE|L2	84836	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
142406	chr20	3854651	3855500	+	0	NA	intron (NM_001206491, intron 2 of 5)	AluSc|SINE|Alu	8241	NM_020746	57506		NM_020746	ENSG00000088888	MAVS	CARDIF|IPS-1|IPS1|VISA	mitochondrial antiviral signaling protein	protein-coding
81910	chr16	11735601	11736200	+	0	NA	intron (NR_136674, intron 2 of 8)	intron (NR_136674, intron 2 of 8)	6957	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
145660	chr20	44962151	44962650	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2003	NM_006809	10953		NM_006809	ENSG00000025772	TOMM34	HTOM34P|TOM34|URCC3	translocase of outer mitochondrial membrane 34	protein-coding
60604	chr13	42048511	42049780	+	0	NA	intron (NM_001204504, intron 2 of 29)	CpG-6631	497	NM_178009	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
100311	chr17	59827601	59828270	+	0	NA	intron (NM_030938, intron 10 of 11)	AluJb|SINE|Alu	-13331	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
218598	chr8	55972221	55972480	+	0	NA	intron (NM_002350, intron 10 of 12)	LTR101_Mam|LTR|ERVL	-69495	NR_145767	109617001		NR_145767	ENSG00000199405	SNORA1B	-	small nucleolar RNA, H/ACA box 1B	snoRNA
163004	chr3	49779971	49780700	+	0	NA	intron (NM_153273, intron 1 of 5)	(AC)n|Simple_repeat|Simple_repeat	5859	NM_001242829	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
62919	chr13	111149721	111149980	+	0	NA	intron (NR_120398, intron 1 of 1)	Tigger17|DNA|TcMar-Tigger	-1285	NR_046516	100874226		NR_046516		ARHGEF7-AS1	-	ARHGEF7 antisense RNA 1	ncRNA
163331	chr3	50376451	50376550	+	0	NA	intron (NM_006030, intron 17 of 37)	intron (NM_006030, intron 17 of 37)	11137	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
49626	chr12	28108551	28108850	+	0	NA	Intergenic	Intergenic	-81756	NM_001352082	55297		NM_018318	ENSG00000123106	CCDC91	HSD8|p56	coiled-coil domain containing 91	protein-coding
178750	chr4	153156301	153156600	+	0	NA	intron (NM_001375525, intron 1 of 10)	intron (NM_001375525, intron 1 of 10)	3372	NM_001375515	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
99765	chr17	51049271	51049430	+	0	NA	intron (NM_001130527, intron 3 of 29)	AluJr|SINE|Alu	-2472	NM_001251971	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
151924	chr22	19031471	19031830	+	0	NA	TTS (NR_110533)	TTS (NR_110533)	9026	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
145589	chr20	44530501	44530700	+	0	NA	Intergenic	AluSp|SINE|Alu	-1181	NM_181805	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
234536	chrX	19673521	19673780	+	0	NA	intron (NM_001353892, intron 7 of 17)	intron (NM_001353892, intron 7 of 17)	-2651	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
42109	chr11	67593571	67593730	+	0	NA	Intergenic	LTR22A|LTR|ERVK	9838	NM_000852	2950		NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
9073	chr1	44837651	44837950	+	0	NA	intron (NM_001166292, intron 2 of 22)	AluYm1|SINE|Alu	5144	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
93470	chr17	18791351	18791750	+	0	NA	intron (NM_001316924, intron 3 of 5)	MER20|DNA|hAT-Charlie	2515	NM_001316920	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
167853	chr3	134232971	134233130	+	0	NA	intron (NM_001005861, intron 1 of 14)	intron (NM_001005861, intron 1 of 14)	17694	NM_001005861	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
136838	chr2	183078391	183079600	+	0	NA	exon (NM_001321519, exon 1 of 4)	exon (NM_001321519, exon 1 of 4)	248	NM_001321519	142679		NM_080876	ENSG00000162999	DUSP19	DUSP17|LMWDSP3|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding
13693	chr1	116751121	116752100	+	0	NA	Intergenic	MER4C|LTR|ERV1	-2820	NM_001328609	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
47743	chr12	6523871	6524030	+	0	NA	intron (NM_014865, intron 17 of 31)	MIR|SINE|MIR	-10567	NR_152150	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
16839	chr1	155665971	155666800	+	0	NA	intron (NM_139119, intron 9 of 10)	AluY|SINE|Alu	12870	NR_132762	106633810		NR_132762		SCARNA26A	-	small Cajal body-specific RNA 26A	ncRNA
99790	chr17	51177171	51177330	+	0	NA	TTS (NM_017643)	TTS (NM_017643)	10528	NM_001018138	4831		NM_002512	ENSG00000243678	NME2	NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF	NME/NM23 nucleoside diphosphate kinase 2	protein-coding
234811	chrX	24056471	24057030	+	0	NA	intron (NM_001415, intron 2 of 11)	AluJb|SINE|Alu	1794	NM_001415	1968		NM_001415	ENSG00000130741	EIF2S3	EIF2|EIF2G|EIF2gamma|MEHMO|MRXSBRK|eIF-2gA|eIF2gX	eukaryotic translation initiation factor 2 subunit gamma	protein-coding
8854	chr1	43369451	43369750	+	0	NA	Intergenic	AluSx|SINE|Alu	-1526	NM_001256401	64834		NM_022821	ENSG00000066322	ELOVL1	CGI-88|IKSHD|Ssc1	ELOVL fatty acid elongase 1	protein-coding
152708	chr22	21640001	21640600	+	0	NA	Intergenic	AluSx|SINE|Alu	-2002	NM_022044	23753		NM_022044	ENSG00000128228	SDF2L1	-	stromal cell derived factor 2 like 1	protein-coding
89319	chr16	88731021	88731280	+	0	NA	promoter-TSS (NR_103774)	promoter-TSS (NR_103774)	-30	NR_103774	100289580		NM_207451		HSALR1	-	HSP90AB1 associated lncRNA 1	ncRNA
213916	chr7	142535201	142536250	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	61198	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
26097	chr10	13296251	13296850	+	0	NA	intron (NM_001037537, intron 1 of 7)	AluSx|SINE|Alu	3196	NM_001037537	5264		NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
155661	chr22	39019271	39019430	+	0	NA	3' UTR (NM_014508, exon 4 of 4)	3' UTR (NM_014508, exon 4 of 4)	-1777	NM_001363781	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
186019	chr5	133995471	133995630	+	0	NA	intron (NM_003374, intron 1 of 8)	intron (NM_003374, intron 1 of 8)	9218	NR_036624								
225459	chr9	35258251	35258350	+	0	NA	intron (NM_001371186, intron 6 of 38)	intron (NM_001371186, intron 6 of 38)	-83596	NM_001371187	10497		NM_006377	ENSG00000198722	UNC13B	MUNC13|UNC13|Unc13h2|munc13-2	unc-13 homolog B	protein-coding
161476	chr3	42355701	42355900	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	54810	NM_144634	131375		NM_144634	ENSG00000157093	LYZL4	LYC4|LYZA	lysozyme like 4	protein-coding
164155	chr3	56768851	56769150	+	0	NA	intron (NM_001289698, intron 3 of 10)	intron (NM_001289698, intron 3 of 10)	6717	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
33523	chr10	119215251	119215550	+	0	NA	intron (NM_005308, intron 1 of 15)	GA-rich|Low_complexity|Low_complexity	7829	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
155805	chr22	39306621	39307450	+	0	NA	Intergenic	Intergenic	6876	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
153146	chr22	23769251	23769800	+	0	NA	Intergenic	Intergenic	-1553	NM_213720	400916		NM_213720	ENSG00000250479	CHCHD10	C22orf16|FTDALS2|IMMD|MIX17A|N27C7-4|SMAJ	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding
149311	chr21	29010871	29011030	+	0	NA	intron (NM_001320724, intron 1 of 5)	SVA_D|Retroposon|SVA	8399	NM_016940	10069		NM_016940	ENSG00000156253	RWDD2B	C21orf6|GL011	RWD domain containing 2B	protein-coding
68772	chr14	91113221	91115830	+	0	NA	promoter-TSS (NM_001102367)	promoter-TSS (NM_001102367)	-110	NM_001102367	80017		NM_024952	ENSG00000133943	DGLUCY	C14orf159	D-glutamate cyclase	protein-coding
183077	chr5	73668321	73668580	+	0	NA	intron (NM_001177693, intron 1 of 35)	MSTD|LTR|ERVL-MaLR	42292	NM_001177693	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
76675	chr15	75709651	75709750	+	0	NA	intron (NM_001897, intron 1 of 9)	intron (NM_001897, intron 1 of 9)	3148	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
40845	chr11	65039671	65040100	+	0	NA	non-coding (NR_037650, exon 11 of 11)	non-coding (NR_037650, exon 11 of 11)	-1048	NR_160028	29901		NM_013299	ENSG00000168061	SAC3D1	HSU79266|SHD1	SAC3 domain containing 1	protein-coding
112880	chr19	7616251	7617330	+	0	NA	promoter-TSS (NR_106850)	promoter-TSS (NR_106850)	-649	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
56184	chr12	111433471	111433900	+	0	NA	intron (NM_005475, intron 2 of 7)	AluJo|SINE|Alu	-1177	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
76714	chr15	75923651	75924250	+	0	NA	intron (NM_147188, intron 5 of 6)	L2c|LINE|L2	20072	NR_037623	26263		NM_012170	ENSG00000167196	FBXO22	FBX22|FISTC1	F-box protein 22	protein-coding
105293	chr17	82494351	82495130	+	0	NA	Intergenic	tRNA-Met-i|tRNA|tRNA	-24992	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
191359	chr6	7197271	7197630	+	0	NA	intron (NM_001003698, intron 6 of 11)	AluSz6|SINE|Alu	89489	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
238065	chrX	135983101	135984000	+	0	NA	Intergenic	Intergenic	-1877	NM_001042537	10479		NM_006359	ENSG00000198689	SLC9A6	MRSA|MRXSCH|NHE6	solute carrier family 9 member A6	protein-coding
94159	chr17	28366751	28367680	+	0	NA	TTS (NM_000638)	TTS (NM_000638)	-2064	NM_001080837	645832		NM_001080837	ENSG00000274529	SEBOX	OG-9|OG9|OG9X	SEBOX homeobox	protein-coding
222857	chr8	142636801	142637330	+	0	NA	Intergenic	Intergenic	-1531	NR_134305	101928087		NR_134305	ENSG00000277332	LOC101928087	-	uncharacterized LOC101928087	ncRNA
39644	chr11	61573151	61573450	+	0	NA	intron (NM_001370211, intron 1 of 7)	intron (NM_001370211, intron 1 of 7)	7572	NM_001252065	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
107730	chr18	50193351	50193450	+	0	NA	intron (NM_001080467, intron 1 of 39)	intron (NM_001080467, intron 1 of 39)	1747	NM_001080467	4645		NM_001080467	ENSG00000167306	MYO5B	DIAR2|MVID1|PFIC10	myosin VB	protein-coding
159310	chr3	13005271	13005950	+	0	NA	intron (NM_001134382, intron 1 of 13)	MER3|DNA|hAT-Charlie	-18509	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
119390	chr19	40227271	40227650	+	0	NA	promoter-TSS (NM_024877)	promoter-TSS (NM_024877)	-771	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
74256	chr15	56981221	56981480	+	0	NA	intron (NM_207038, intron 3 of 19)	MLT1A1|LTR|ERVL-MaLR	61905	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
17169	chr1	156214951	156215450	+	0	NA	intron (NM_001199664, intron 1 of 4)	L2b|LINE|L2	2212	NM_001199653	11243		NM_007221	ENSG00000160783	PMF1	-	polyamine modulated factor 1	protein-coding
2832	chr1	11058251	11058350	+	0	NA	intron (NM_003132, intron 3 of 7)	AluSp|SINE|Alu	1718	NM_003132	6723		NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
236208	chrX	65686221	65687800	+	0	NA	intron (NM_002444, intron 1 of 12)	Tigger15a|DNA|TcMar-Tigger	19356	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
38781	chr11	47188621	47189530	+	0	NA	Intergenic	AluSq|SINE|Alu	-2641	NM_001184974	29763		NM_016223	ENSG00000165912	PACSIN3	SDPIII	protein kinase C and casein kinase substrate in neurons 3	protein-coding
186160	chr5	134182451	134183100	+	0	NA	Intergenic	AluSq|SINE|Alu	-5742	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
64787	chr14	34839401	34839700	+	0	NA	intron (NM_013448, intron 3 of 26)	AluJb|SINE|Alu	-34641	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
27530	chr10	32315651	32316700	+	0	NA	intron (NR_168508, intron 1 of 12)	L1ME2z|LINE|L1	30983	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
17367	chr1	156527751	156527850	+	0	NA	intron (NM_178229, intron 37 of 37)	intron (NM_178229, intron 37 of 37)	-27025	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
94357	chr17	28908671	28909050	+	0	NA	exon (NM_001033561, exon 12 of 15)	exon (NM_001033561, exon 12 of 15)	-5781	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
68252	chr14	77011171	77011530	+	0	NA	Intergenic	LTR32|LTR|ERVL	17358	NM_024496	64207		NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1|NEDAMSS	interferon regulatory factor 2 binding protein like	protein-coding
2	chr1	11001	11600	+	0	NA	promoter-TSS (NR_046018)	promoter-TSS (NR_046018)	-574	NR_046018	100287102		NR_046018	ENSG00000290825	DDX11L1	-	DEAD/H-box helicase 11 like 1 (pseudogene)	pseudo
149817	chr21	35006321	35006980	+	0	NA	intron (NM_001754, intron 2 of 8)	MIR|SINE|MIR	32776	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
74776	chr15	63252371	63252530	+	0	NA	intron (NM_016530, intron 3 of 7)	MIRb|SINE|MIR	-25100	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
68434	chr14	81437571	81437730	+	0	NA	Intergenic	Intergenic	-1185	NM_001366849	85439		NM_033104	ENSG00000140022	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
43991	chr11	94325701	94325950	+	0	NA	Intergenic	Intergenic	21086	NM_001199206	390243		NM_001080486	ENSG00000183560	IZUMO1R	FOLR4|FR-delta|Folbp3|JUNO	IZUMO1 receptor, JUNO	protein-coding
22443	chr1	220748151	220748680	+	0	NA	promoter-TSS (NM_017898)	promoter-TSS (NM_017898)	93	NM_001317338	54996		NM_017898	ENSG00000117791	MTARC2	MARC2|MOSC2	mitochondrial amidoxime reducing component 2	protein-coding
75749	chr15	68301551	68302050	+	0	NA	3' UTR (NM_001004439, exon 30 of 30)	3' UTR (NM_001004439, exon 30 of 30)	24055	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
71741	chr15	20638501	20638700	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	76251	NR_027411	729786		NR_027411	ENSG00000181984	GOLGA8CP	GOLGA8C	golgin A8 family member C, pseudogene	pseudo
93609	chr17	19144471	19144830	+	0	NA	intron (NM_001353418, intron 3 of 3)	intron (NM_001353418, intron 3 of 3)	17061	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
102530	chr17	75819571	75820550	+	0	NA	exon (NM_001080419, exon 13 of 16)	exon (NM_001080419, exon 13 of 16)	24344	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
213662	chr7	139854601	139855430	+	0	NA	intron (NM_030984, intron 1 of 11)	MSTC|LTR|ERVL-MaLR	25751	NM_001366538	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
139295	chr2	219517451	219517750	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	3118	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
212031	chr7	114934201	114934400	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	12146	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
69200	chr14	92673551	92673850	+	0	NA	intron (NM_024832, intron 7 of 9)	AluSx|SINE|Alu	74927	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
8384	chr1	40380571	40380730	+	0	NA	intron (NM_001198978, intron 1 of 9)	AluSx1|SINE|Alu	6017	NM_001198978	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
15047	chr1	148395771	148395930	+	0	NA	Intergenic	AluY|SINE|Alu	-6656	NR_168364	100132057		NR_033189	ENSG00000291232	PDE4DIPP6	-	PDE4DIP pseudogene 6	pseudo
163496	chr3	51311101	51311330	+	0	NA	intron (NM_004947, intron 28 of 52)	intron (NM_004947, intron 28 of 52)	-74076	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
208352	chr7	66523421	66523980	+	0	NA	Intergenic	Intergenic	30009	NR_134571	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
222351	chr8	133558021	133558280	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	13737	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
212304	chr7	124932471	124932630	+	0	NA	intron (NR_125719, intron 1 of 7)	intron (NR_125719, intron 1 of 7)	-2567	NR_003104	25913		NM_015450	ENSG00000128513	POT1	CMM10|CRMCC3|GLM9|HPOT1|PFBMFT8|TPDS3	protection of telomeres 1	protein-coding
97627	chr17	44178021	44178330	+	0	NA	intron (NR_049729, intron 3 of 3)	intron (NR_049729, intron 3 of 3)	7471	NM_080863	92591		NM_080863	ENSG00000161664	ASB16	-	ankyrin repeat and SOCS box containing 16	protein-coding
166325	chr3	112803251	112803550	+	0	NA	intron (NR_149026, intron 2 of 4)	intron (NR_149026, intron 2 of 4)	922	NR_149026	100129297		NR_149026		CD200R1L-AS1	-	CD200R1L antisense RNA 1	ncRNA
181097	chr5	36905751	36905850	+	0	NA	intron (NM_133433, intron 1 of 46)	AluY|SINE|Alu	29031	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
179075	chr4	167108321	167108580	+	0	NA	intron (NM_016950, intron 2 of 11)	L1MA3|LINE|L1	125976	NM_001204353	50859		NM_016950	ENSG00000196104	SPOCK3	HSAJ1454|TES-3|TICN3	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	protein-coding
163837	chr3	52463471	52464230	+	0	NA	intron (NM_001276294, intron 3 of 13)	AluSz6|SINE|Alu	8246	NM_001276294	11188		NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
195149	chr6	35718821	35719380	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	9483	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
38823	chr11	47302301	47302730	+	0	NA	intron (NR_164842, intron 23 of 33)	L1M2a|LINE|L1	-30405	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
146863	chr20	51463521	51464380	+	0	NA	intron (NM_173091, intron 5 of 9)	intron (NM_173091, intron 5 of 9)	-10973	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
30240	chr10	75018371	75018730	+	0	NA	intron (NM_012330, intron 13 of 17).2	intron (NM_012330, intron 13 of 17).2	-3183	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
38992	chr11	47616171	47616530	+	0	NA	TTS (NM_001317231)	TTS (NM_001317231)	-21939	NM_031909	114900		NM_031909	ENSG00000172247	C1QTNF4	CTRP4|ZACRP4	C1q and TNF related 4	protein-coding
35806	chr11	2205151	2205450	+	0	NA	Intergenic	Intergenic	32237	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
89117	chr16	88498851	88499150	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	30082	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
147927	chr20	62917821	62918600	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	8295	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
70563	chr14	102589621	102590130	+	0	NA	Intergenic	L2b|LINE|L2	-2774	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
42307	chr11	68462521	68463350	+	0	NA	intron (NM_001352362, intron 2 of 24)	intron (NM_001352362, intron 2 of 24)	2183	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
116222	chr19	17519821	17520380	+	0	NA	intron (NM_012088, intron 4 of 4)	AluJo|SINE|Alu	-3201	NM_001098524	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
100817	chr17	64083421	64083680	+	0	NA	intron (NM_001433, intron 2 of 21)	intron (NM_001433, intron 2 of 21)	46594	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
203981	chr7	1668501	1669230	+	0	NA	Intergenic	CpG	-19254	NM_001128636	392617		NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
230819	chr9	129035951	129037350	+	0	NA	promoter-TSS (NR_138424)	promoter-TSS (NR_138424)	24	NM_001329990	84895		NM_032809	ENSG00000148343	MIGA2	C9orf54|FAM73B	mitoguardin 2	protein-coding
85213	chr16	47150171	47150330	+	0	NA	intron (NR_110904, intron 1 of 3)	intron (NR_110904, intron 1 of 3)	6182	NR_110904	101927102		NR_110903		ITFG1-AS1	-	ITFG1 antisense RNA 1	ncRNA
157508	chr22	45333601	45333880	+	0	NA	intron (NR_146323, intron 9 of 11)	AluJr|SINE|Alu	15297	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
71978	chr15	25758351	25758680	+	0	NA	intron (NM_024490, intron 2 of 20)	LTR10F|LTR|ERV1	90310	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
104319	chr17	80937521	80937980	+	0	NA	intron (NM_020761, intron 24 of 33)	intron (NM_020761, intron 24 of 33)	33463	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
195092	chr6	35591171	35591780	+	0	NA	intron (NM_001145775, intron 7 of 11)	intron (NM_001145775, intron 7 of 11)	73314	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
65625	chr14	52287821	52288330	+	0	NA	Intergenic	Intergenic	20377	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
234317	chrX	13741621	13741880	+	0	NA	intron (NM_001330210, intron 6 of 23)	LTR7C|LTR|ERV1	7002	NM_003611	8481		NM_003611	ENSG00000046651	OFD1	71-7A|CXorf5|JBTS10|RP23|SGBS2	OFD1 centriole and centriolar satellite protein	protein-coding
107366	chr18	45974021	45974800	+	0	NA	Intergenic	Intergenic	-7081	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
43782	chr11	86262471	86262630	+	0	NA	intron (NM_001330334, intron 6 of 9)	AluSz6|SINE|Alu	-15783	NR_106813	102465452		NR_106813	ENSG00000283744	MIR6755	hsa-mir-6755	microRNA 6755	ncRNA
110386	chr19	1925521	1925980	+	0	NA	3' UTR (NM_001329540, exon 6 of 6)	3' UTR (NM_001329540, exon 6 of 6)	-15422	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
183226	chr5	76331121	76332050	+	0	NA	3' UTR (NM_014979, exon 13 of 13)	3' UTR (NM_014979, exon 13 of 13)	-71700	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
176428	chr4	89264071	89264580	+	0	NA	intron (NM_198281, intron 1 of 1)	MSTB1|LTR|ERVL-MaLR	43475	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
55430	chr12	104515901	104516100	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	59052	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
49448	chr12	24922221	24922550	+	0	NA	intron (NM_001178091, intron 1 of 9)	intron (NM_001178091, intron 1 of 9)	-19318	NM_001178093	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
17678	chr1	157724851	157725600	+	0	NA	Intergenic	Intergenic	-24456	NM_052939	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
82575	chr16	18782701	18783500	+	0	NA	exon (NM_001030009, exon 5 of 5)	exon (NM_001030009, exon 5 of 5)	7234	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
170257	chr3	184255901	184256300	+	0	NA	intron (NM_014693, intron 1 of 18)	AluSq|SINE|Alu	5453	NM_033259	94032		NM_033259	ENSG00000163888	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin dependent protein kinase II inhibitor 2	protein-coding
125020	chr2	9575621	9576080	+	0	NA	Intergenic	Intergenic	-20020	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
101252	chr17	66306421	66307100	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	4147	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
29079	chr10	67902701	67902900	+	0	NA	intron (NM_001142498, intron 3 of 7)	intron (NM_001142498, intron 3 of 7)	11398	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
201561	chr6	149314271	149315080	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	-3037	NM_001292034	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
111060	chr19	3125671	3126500	+	0	NA	Intergenic	L2a|LINE|L2	-9948	NM_002068	2769		NM_002068	ENSG00000060558	GNA15	GNA16|HG1L	G protein subunit alpha 15	protein-coding
187708	chr5	143382401	143383130	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	20518	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
178882	chr4	155667121	155667830	+	0	NA	promoter-TSS (NM_001130684)	promoter-TSS (NM_001130684)	-187	NM_001379674	2982		NM_000856	ENSG00000164116	GUCY1A1	GC-S-alpha-1|GC-SA3|GCS-alpha-3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6	guanylate cyclase 1 soluble subunit alpha 1	protein-coding
189861	chr5	177171901	177172280	+	0	NA	intron (NM_172349, intron 3 of 23)	L1MB4|LINE|L1	37861	NM_001365684	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
105688	chr18	2662051	2662530	+	0	NA	intron (NM_015295, intron 1 of 47)	intron (NM_015295, intron 1 of 47)	6564	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
231604	chr9	131558671	131558830	+	0	NA	3' UTR (NM_001365666, exon 4 of 4)	3' UTR (NM_001365666, exon 4 of 4)	13227	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
234084	chrX	9165771	9166330	+	0	NA	Intergenic	L1ME1|LINE|L1	-131923	NM_205849	171483		NM_173696	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9 member B	protein-coding
224967	chr9	33072601	33072830	+	0	NA	intron (NM_018225, intron 2 of 11)	AluSz|SINE|Alu	3959	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
108603	chr18	75230271	75230430	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	19553	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
232815	chr9	136720451	136720900	+	0	NA	intron (NM_152421, intron 2 of 4)	intron (NM_152421, intron 2 of 4)	5562	NR_002975	677824		NR_002975	ENSG00000280496	SNORA17B	ACA43|SNORA43	small nucleolar RNA, H/ACA box 17B	snoRNA
119738	chr19	41267301	41268300	+	0	NA	intron (NM_001301016, intron 1 of 14)	intron (NM_001301016, intron 1 of 14)	2719	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
67011	chr14	67487971	67489350	+	0	NA	promoter-TSS (NM_001348543)	promoter-TSS (NM_001348543)	61	NM_001348542	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
171812	chr4	658901	659100	+	0	NA	exon (NM_001379247, exon 9 of 20)	exon (NM_001379247, exon 9 of 20)	5823	NM_001350154	5158		NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|GMP-PDEbeta|PDEB|RP40|rd1	phosphodiesterase 6B	protein-coding
107398	chr18	46099801	46100000	+	0	NA	intron (NM_001001937, intron 1 of 12)	intron (NM_001001937, intron 1 of 12)	-1547	NM_001257335	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
114509	chr19	12788421	12789200	+	0	NA	Intergenic	Intergenic	1682	NR_049864	100847071		NR_049864	ENSG00000263800	MIR5684	-	microRNA 5684	ncRNA
80676	chr16	3029501	3030600	+	0	NA	intron (NM_001369667, intron 5 of 9)	MIR|SINE|MIR	-2431	NR_047572	100128770		NR_047572	ENSG00000205890	LOC100128770	-	uncharacterized LOC100128770	ncRNA
86547	chr16	67187021	67187680	+	0	NA	exon (NM_178516, exon 5 of 14)	exon (NM_178516, exon 5 of 14)	2786	NM_178516	283849		NM_178516	ENSG00000179044	EXOC3L1	EXOC3L	exocyst complex component 3 like 1	protein-coding
153179	chr22	23836001	23837450	+	0	NA	3' UTR (NM_001317946, exon 9 of 9)	3' UTR (NM_001317946, exon 9 of 9)	2281	NM_001135751	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
2809	chr1	11010771	11010930	+	0	NA	Intergenic	AluYk4|SINE|Alu	-1804	NM_007375	23435		NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding
50459	chr12	47743371	47743530	+	0	NA	intron (NM_001098532, intron 17 of 26)	intron (NM_001098532, intron 17 of 26)	14948	NM_001098532	10411		NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
231954	chr9	133141601	133142800	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	7010	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
36635	chr11	7548871	7549100	+	0	NA	intron (NM_001351862, intron 2 of 24)	intron (NM_001351862, intron 2 of 24)	-28055	NM_001351859	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
173365	chr4	7862721	7863200	+	0	NA	intron (NM_001371091, intron 4 of 17)	intron (NM_001371091, intron 4 of 17)	9348	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
104013	chr17	80110951	80111250	+	0	NA	intron (NM_000152, intron 11 of 19)	intron (NM_000152, intron 11 of 19)	9519	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
108953	chr18	79512801	79513400	+	0	NA	intron (NM_172387, intron 9 of 9)	CpG	-66182	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
156117	chr22	40096951	40097450	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	52383	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
116197	chr19	17475871	17476030	+	0	NA	intron (NM_198580, intron 1 of 11)	intron (NM_198580, intron 1 of 11)	5426	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
105415	chr17	82847701	82848780	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-8218	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
161449	chr3	42099371	42100100	+	0	NA	intron (NM_001042646, intron 1 of 15)	intron (NM_001042646, intron 1 of 15)	8378	NM_001349246	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
108704	chr18	77065051	77066200	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-48570	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
189955	chr5	177416121	177416580	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-6786	NM_000505	2161		NM_000505	ENSG00000131187	F12	HAE3|HAEX|HAF	coagulation factor XII	protein-coding
112752	chr19	7392371	7392530	+	0	NA	intron (NM_001367823, intron 10 of 28)	AluSz|SINE|Alu	-2695	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
231703	chr9	131726451	131726980	+	0	NA	intron (NM_001377935, intron 1 of 26)	L1ME1|LINE|L1	10732	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
117635	chr19	23667921	23668180	+	0	NA	intron (NM_138330, intron 1 of 3)	LTR12C|LTR|ERV1	19162	NM_138330	171392		NM_138330	ENSG00000197372	ZNF675	TBZF|TIZ	zinc finger protein 675	protein-coding
142094	chr20	2527151	2527250	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-2678	NM_001282495	79175		NM_024325	ENSG00000088876	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
216947	chr8	22975301	22975730	+	0	NA	Intergenic	Intergenic	-11736	NM_001160036	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
18300	chr1	161156051	161157400	+	0	NA	intron (NM_016406, intron 1 of 5)	AluSx|SINE|Alu	2747	NM_016406	51506		NM_016406	ENSG00000143222	UFC1	HSPC155|NEDSG	ubiquitin-fold modifier conjugating enzyme 1	protein-coding
132583	chr2	106565701	106566100	+	0	NA	Intergenic	Intergenic	78536	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
93063	chr17	17494651	17495280	+	0	NA	3' UTR (NM_016084, exon 2 of 2)	3' UTR (NM_016084, exon 2 of 2)	1430	NM_016084	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
177933	chr4	135447871	135448030	+	0	NA	Intergenic	L1PA3|LINE|L1	-324391	NR_147187	105377439		NR_147187		LINC02485	-	long intergenic non-protein coding RNA 2485	ncRNA
222678	chr8	141241821	141242080	+	0	NA	intron (NM_001286646, intron 2 of 8)	intron (NM_001286646, intron 2 of 8)	-12617	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
42936	chr11	73408421	73408850	+	0	NA	intron (NM_001286051, intron 4 of 5)	AluJb|SINE|Alu	31967	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
226125	chr9	63113671	63114230	+	0	NA	non-coding (NR_046175, exon 4 of 4)	non-coding (NR_046175, exon 4 of 4)	11269	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
159163	chr3	12800771	12800930	+	0	NA	intron (NM_012298, intron 1 of 12)	AluSz|SINE|Alu	4170	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
189605	chr5	175871501	175872200	+	0	NA	intron (NM_001008220, intron 1 of 3)	CpG	272	NM_001008220	10814		NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
188394	chr5	152741451	152741550	+	0	NA	intron (NR_109877, intron 3 of 4)	L1PA2|LINE|L1	230849	NR_109877	101927134		NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
19352	chr1	173853601	173853800	+	0	NA	intron (NM_018122, intron 14 of 16)	intron (NM_018122, intron 14 of 16)	-9548	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
97974	chr17	45255621	45255880	+	0	NA	exon (NM_152343, exon 4 of 5)	exon (NM_152343, exon 4 of 5)	-6330	NR_024435	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
162151	chr3	46966701	46967300	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	9501	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
235718	chrX	48908171	48908330	+	0	NA	intron (NM_001282649, intron 1 of 2)	AluSg4|SINE|Alu	3396	NM_005660	7355		NM_005660	ENSG00000102100	SLC35A2	CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL	solute carrier family 35 member A2	protein-coding
37204	chr11	14327171	14327530	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	31135	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
210216	chr7	99274201	99274480	+	0	NA	intron (NR_002147, intron 1 of 15)	intron (NR_002147, intron 1 of 15)	1039	NR_002147	84176		NR_002147	ENSG00000002079	MYH16	MHC20|MYH16P|MYH5	myosin heavy chain 16 (pseudogene)	pseudo
26327	chr10	15142121	15142380	+	0	NA	intron (NM_004808, intron 1 of 11)	intron (NM_004808, intron 1 of 11)	13097	NR_036506	100192204		NR_036506	ENSG00000206448	PPIAP30	-	peptidylprolyl isomerase A pseudogene 30	pseudo
202514	chr6	158563171	158563680	+	0	NA	intron (NR_164859, intron 1 of 16)	AluSx|SINE|Alu	3334	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
163468	chr3	50621721	50622180	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	4799	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
204289	chr7	2663151	2663450	+	0	NA	3' UTR (NM_025250, exon 14 of 14)	3' UTR (NM_025250, exon 14 of 14)	-16222	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
134287	chr2	135874051	135874350	+	0	NA	intron (NM_005915, intron 1 of 16)	intron (NM_005915, intron 1 of 16)	2243	NM_005915	4175		NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
65272	chr14	49986601	49986800	+	0	NA	intron (NR_126498, intron 3 of 3)	intron (NR_126498, intron 3 of 3)	6434	NR_126499	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
48201	chr12	8070451	8070750	+	0	NA	Intergenic	MIR|SINE|MIR	-4241	NM_004054	719		NM_004054	ENSG00000171860	C3AR1	AZ3B|C3AR|HNFAG09	complement C3a receptor 1	protein-coding
237651	chrX	124260971	124261130	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-71610	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
149254	chr21	25801301	25801800	+	0	NA	Intergenic	L1MEi|LINE|L1	-65896	NM_001320267	522		NM_001685	ENSG00000154723	ATP5PF	ATP5|ATP5A|ATP5J|ATPM|CF6|F6	ATP synthase peripheral stalk subunit F6	protein-coding
44138	chr11	96132351	96132650	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-208393	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
110628	chr19	2219771	2220730	+	0	NA	intron (NM_032482, intron 23 of 27)	intron (NM_032482, intron 23 of 27)	13899	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
79528	chr16	813251	814450	+	0	NA	TTS (NM_001013638)	TTS (NM_001013638)	8407	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
92997	chr17	17178251	17178550	+	0	NA	intron (NM_015134, intron 21 of 22)	intron (NM_015134, intron 21 of 22)	27933	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
182621	chr5	66596001	66596850	+	0	NA	promoter-TSS (NM_001290228)	promoter-TSS (NM_001290228)	32	NM_001164664	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
15110	chr1	148629121	148629730	+	0	NA	intron (NM_001364008, intron 2 of 4)	intron (NM_001364008, intron 2 of 4)	-33708	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
9241	chr1	46131571	46132100	+	0	NA	promoter-TSS (NM_001328650)	promoter-TSS (NM_001328650)	-64	NM_001328650	8503		NM_003629	ENSG00000117461	PIK3R3	p55|p55-GAMMA|p55PIK	phosphoinositide-3-kinase regulatory subunit 3	protein-coding
164613	chr3	66317551	66317850	+	0	NA	intron (NR_028475, intron 5 of 9)	L1PA10|LINE|L1	88067	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
127060	chr2	37344501	37345350	+	0	NA	intron (NM_012413, intron 1 of 6)	CpG	295	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
153222	chr22	23959951	23960250	+	0	NA	intron (NM_001302670, intron 2 of 4)	AluY|SINE|Alu	1095	NM_001080843	653689		NM_001080843	ENSG00000133433	GSTT2B	GSTT2P	glutathione S-transferase theta 2B	protein-coding
220581	chr8	100833721	100834150	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	-111847	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
200057	chr6	129989271	129989750	+	0	NA	Intergenic	L2b|LINE|L2	-29071	NM_032438	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
44831	chr11	114062751	114063250	+	0	NA	promoter-TSS (NM_001354752)	promoter-TSS (NM_001354752)	-211	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
61325	chr13	50460221	50460480	+	0	NA	intron (NR_109974, intron 4 of 6)	L3|LINE|CR1	67099	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
130059	chr2	74460221	74460800	+	0	NA	TTS (NM_001146158)	TTS (NM_001146158)	2072	NM_012477	23559		NM_012477	ENSG00000239779	WBP1	WBP-1	WW domain binding protein 1	protein-coding
237901	chrX	131762851	131763150	+	0	NA	intron (NR_152876, intron 5 of 9)	intron (NR_152876, intron 5 of 9)	67643	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
99481	chr17	50176871	50177230	+	0	NA	Intergenic	Intergenic	-4574	NR_024192	373861		NM_194072		H1-9P	H1-9|H1.9|HILS1	H1.9 linker histone, pseudogene	pseudo
3960	chr1	18645021	18645680	+	0	NA	intron (NM_001135254, intron 4 of 8)	CpG	14504	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
40510	chr11	64275421	64276780	+	0	NA	intron (NM_032989, intron 2 of 3)	intron (NM_032989, intron 2 of 3)	5569	NM_001378084	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
147402	chr20	58818621	58818900	+	0	NA	promoter-TSS (NR_030580)	promoter-TSS (NR_030580)	-447	NR_030580	100126296		NR_030580	ENSG00000216031	MIR298	MIRN298|hsa-mir-298	microRNA 298	ncRNA
165088	chr3	71488301	71488650	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	53614	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
171731	chr3	197954121	197955480	+	0	NA	intron (NM_000996, intron 4 of 4)	AluSz6|SINE|Alu	4610	NM_001316311	6165		NM_000996	ENSG00000182899	RPL35A	DBA5|L35A|eL33	ribosomal protein L35a	protein-coding
168003	chr3	136804201	136804600	+	0	NA	Intergenic	MER31A|LTR|ERV1	-14619	NM_001097600	80723		NM_025246	ENSG00000168917	SLC35G2	TMEM22	solute carrier family 35 member G2	protein-coding
109451	chr19	754101	754300	+	0	NA	intron (NR_135168, intron 1 of 3)	AluY|SINE|Alu	3088	NR_135168	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
23976	chr1	235181621	235182550	+	0	NA	exon (NM_001206794, exon 20 of 24)	exon (NM_001206794, exon 20 of 24)	8031	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
61473	chr13	52399851	52399950	+	0	NA	intron (NM_018676, intron 2 of 4)	intron (NM_018676, intron 2 of 4)	6272	NM_199263	55901		NM_018676	ENSG00000136114	THSD1	ANIB12|LMPHM13|TMTSP|UNQ3010	thrombospondin type 1 domain containing 1	protein-coding
228109	chr9	96564971	96565130	+	0	NA	intron (NR_147239, intron 2 of 14)	intron (NR_147239, intron 2 of 14)	1781	NM_001351569	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
215843	chr8	7035771	7035930	+	0	NA	Intergenic	Intergenic	-6361	NR_073421	724068		NR_073421	ENSG00000234178	DEFA11P	DEFAP3	defensin alpha 11, pseudogene	pseudo
6064	chr1	27144251	27144680	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	10660	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
100254	chr17	59412921	59413380	+	0	NA	Intergenic	Intergenic	47067	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
185911	chr5	132819601	132821130	+	0	NA	Intergenic	Intergenic	5945	NM_133456	134549		NM_133456	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
112556	chr19	6556671	6557030	+	0	NA	Intergenic	Intergenic	25824	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
164714	chr3	68057271	68058430	+	0	NA	intron (NM_213609, intron 2 of 4)	MLT1D|LTR|ERVL-MaLR	53603	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
150450	chr21	42467151	42467480	+	0	NA	Intergenic	L1MEa|LINE|L1	28909	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
49555	chr12	26831971	26832600	+	0	NA	intron (NM_002223, intron 1 of 56)	intron (NM_002223, intron 1 of 56)	909	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
75967	chr15	70490471	70490630	+	0	NA	Intergenic	Intergenic	15378	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
230602	chr9	128593721	128593980	+	0	NA	intron (NM_001375310, intron 23 of 57)	intron (NM_001375310, intron 23 of 57)	41263	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
192269	chr6	20399301	20399980	+	0	NA	Intergenic	Intergenic	-2239	NM_001949	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
173900	chr4	25030651	25030950	+	0	NA	5' UTR (NM_018176, exon 1 of 8)	5' UTR (NM_018176, exon 1 of 8)	146	NM_018176	55203		NM_018176	ENSG00000153012	LGI2	LGIL2	leucine rich repeat LGI family member 2	protein-coding
193357	chr6	30318171	30318730	+	0	NA	intron (NR_024052, intron 1 of 4)	MSTA|LTR|ERVL-MaLR	7684	NR_052012	414778		NR_052012	ENSG00000270604	HCG17	HCG18|LINC00046|NCRNA00046	HLA complex group 17	ncRNA
121635	chr19	47456701	47457100	+	0	NA	intron (NM_015063, intron 3 of 9)	CpG	14993	NM_015063	6543		NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
128438	chr2	55518971	55520730	+	0	NA	exon (NM_001282761, exon 1 of 11)	exon (NM_001282761, exon 1 of 11)	132	NM_080667	112942		NM_080667	ENSG00000163001	CFAP36	BARTL1|CCDC104	cilia and flagella associated protein 36	protein-coding
59513	chr13	27044801	27045490	+	0	NA	Intergenic	Intergenic	-80388	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
93301	chr17	18155401	18156400	+	0	NA	intron (NM_016239, intron 46 of 64)	intron (NM_016239, intron 46 of 64)	-27928	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
209275	chr7	75919551	75919850	+	0	NA	intron (NM_001367562, intron 2 of 16)	intron (NM_001367562, intron 2 of 16)	4503	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
170814	chr3	189334401	189334800	+	0	NA	Intergenic	Intergenic	-94006	NR_046722	100874027		NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
89040	chr16	88431951	88432250	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-21180	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
33202	chr10	113851401	113852530	+	0	NA	intron (NM_001271816, intron 2 of 9)	AluJb|SINE|Alu	2117	NM_014881	9937		NM_014881	ENSG00000198924	DCLRE1A	PSO2|SNM1|SNM1A	DNA cross-link repair 1A	protein-coding
230952	chr9	129422021	129422280	+	0	NA	Intergenic	MIR3|SINE|MIR	-66510	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
7658	chr1	35646051	35646350	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-4674	NM_002794	5690		NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome 20S subunit beta 2	protein-coding
181079	chr5	36820971	36821150	+	0	NA	Intergenic	Intergenic	55634	NR_046262	646719		NR_046262	ENSG00000285967	NIPBL-DT	NIPBL-AS|NIPBL-AS1	NIPBL divergent transcript	ncRNA
166416	chr3	113726651	113727200	+	0	NA	intron (NM_025146, intron 1 of 4)	AluJb|SINE|Alu	19324	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
14543	chr1	144876901	144877100	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	158829	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
93972	chr17	21739501	21739750	+	0	NA	Intergenic	Intergenic	47102	NM_001194958	100134444		NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium inwardly rectifying channel subfamily J member 18	protein-coding
140451	chr2	233158221	233158950	+	0	NA	intron (NM_001017915, intron 10 of 26).2	MIRb|SINE|MIR	-92986	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
88504	chr16	85296921	85297420	+	0	NA	Intergenic	Intergenic	9155	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
174383	chr4	39029271	39029430	+	0	NA	intron (NM_001303228, intron 1 of 6)	intron (NM_001303228, intron 1 of 6)	3059	NM_024943	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
173650	chr4	13540821	13541350	+	0	NA	3' UTR (NM_001189, exon 2 of 2)	3' UTR (NM_001189, exon 2 of 2)	3423	NM_001189	579		NM_001189	ENSG00000109705	NKX3-2	BAPX1|NKX3.2|NKX3B|SMMD	NK3 homeobox 2	protein-coding
171959	chr4	898821	899280	+	0	NA	intron (NM_001318134, intron 2 of 24)	intron (NM_001318134, intron 2 of 24)	33266	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
222800	chr8	142405721	142406230	+	0	NA	Intergenic	Intergenic	-2793	NM_145003	203062		NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
5974	chr1	26925801	26926330	+	0	NA	intron (NM_006600, intron 2 of 8)	AluSp|SINE|Alu	4322	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
190265	chr5	179166621	179167350	+	0	NA	intron (NM_014244, intron 5 of 21)	CpG	106612	NM_014594	30832		NM_014594	ENSG00000177932	ZNF354C	KID3	zinc finger protein 354C	protein-coding
87961	chr16	79770051	79770800	+	0	NA	promoter-TSS (NR_104660)	promoter-TSS (NR_104660)	-46	NR_104660	101928248		NR_104660	ENSG00000260876	LINC01229	-	long intergenic non-protein coding RNA 1229	ncRNA
36910	chr11	10793551	10794110	+	0	NA	Intergenic	AluJb|SINE|Alu	7778	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
1471	chr1	2689671	2690030	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-56834	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
72848	chr15	40198571	40198730	+	0	NA	intron (NM_001211, intron 9 of 22)	L2a|LINE|L2	-18778	NM_001128629	106821730		NM_001128628	ENSG00000137843	BUB1B-PAK6	PAK-5|PAK-6|PAK5|PAK6	BUB1B-PAK6 readthrough	protein-coding
56143	chr12	111322751	111323050	+	0	NA	intron (NM_015267, intron 18 of 21)	intron (NM_015267, intron 18 of 21)	18758	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
174089	chr4	30716971	30717430	+	0	NA	Intergenic	Intergenic	-3169	NM_002589	5099		NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
81412	chr16	8655171	8655330	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-19367	NM_020686	18		NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
171609	chr3	197338751	197338850	+	0	NA	Intergenic	Intergenic	-39479	NM_001366203	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
181373	chr5	40621951	40622250	+	0	NA	Intergenic	Intergenic	-57815	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
389	chr1	1048851	1049330	+	0	NA	intron (NM_198576, intron 24 of 35)	G-rich|Low_complexity|Low_complexity	-10644	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
207155	chr7	43588371	43589000	+	0	NA	intron (NM_004760, intron 1 of 6)	AluSz|SINE|Alu	5577	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
39683	chr11	61718251	61718750	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	-34136	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
72141	chr15	29038121	29038880	+	0	NA	intron (NM_001353793, intron 2 of 12).2	intron (NM_001353793, intron 2 of 12).2	-32158	NM_001353797	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
74572	chr15	60543531	60544300	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	48611	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
189348	chr5	172186601	172187700	+	0	NA	intron (NM_005990, intron 1 of 18)	intron (NM_005990, intron 1 of 18)	1074	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
206745	chr7	36668771	36669130	+	0	NA	intron (NM_001177506, intron 3 of 21)	intron (NM_001177506, intron 3 of 21)	55544	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
70499	chr14	102137601	102137800	+	0	NA	intron (NM_001017963, intron 1 of 11)	intron (NM_001017963, intron 1 of 11)	-1723	NM_001353670	91833		NM_144574	ENSG00000140153	WDR20	Bun107|DMR	WD repeat domain 20	protein-coding
204853	chr7	5820401	5820600	+	0	NA	Intergenic	Intergenic	-2660	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
145967	chr20	46316871	46317030	+	0	NA	Intergenic	Intergenic	-8452	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
195238	chr6	36302151	36302950	+	0	NA	intron (NM_173676, intron 6 of 7)	intron (NM_173676, intron 6 of 7)	32090	NM_001145717	285848		NM_173676	ENSG00000180316	PNPLA1	ARCI10|dJ50J22.1	patatin like phospholipase domain containing 1	protein-coding
147174	chr20	56460071	56461480	+	0	NA	TTS (NM_001164116)	TTS (NM_001164116)	-7810	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
125593	chr2	16757121	16757430	+	0	NA	Intergenic	Intergenic	-91441	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
52501	chr12	56037271	56037800	+	0	NA	3' UTR (NM_001351090, exon 7 of 7)	3' UTR (NM_001351090, exon 7 of 7)	-4383	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
97730	chr17	44372971	44373530	+	0	NA	intron (NM_000419, intron 29 of 29)	AluSx1|SINE|Alu	-9397	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
63876	chr14	21748821	21749530	+	0	NA	Intergenic	Intergenic	-78158	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
86289	chr16	58620171	58620680	+	0	NA	intron (NM_206999, intron 1 of 30)	AluSx1|SINE|Alu	9401	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
128867	chr2	64025571	64026130	+	0	NA	Intergenic	Intergenic	-6422	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
28218	chr10	45082301	45082500	+	0	NA	Intergenic	Intergenic	72196	NR_024472	100133308		NR_024472		RSU1P2	-	Ras suppressor protein 1 pseudogene 2	pseudo
132055	chr2	101154101	101154300	+	0	NA	non-coding (NR_135594, exon 2 of 2)	non-coding (NR_135594, exon 2 of 2)	2540	NR_135594	100506286		NR_135594	ENSG00000272902	TBC1D8-AS1	-	TBC1D8 antisense RNA 1	ncRNA
168309	chr3	141557901	141558500	+	0	NA	intron (NM_006506, intron 7 of 23)	MIRc|SINE|MIR	71173	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
136448	chr2	176844401	176844950	+	0	NA	Intergenic	Intergenic	206921	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
237378	chrX	119391471	119391630	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7786	NM_145305	203427		NM_145305	ENSG00000077713	SLC25A43	-	solute carrier family 25 member 43	protein-coding
141145	chr2	239228021	239228280	+	0	NA	intron (NM_006037, intron 3 of 26)	intron (NM_006037, intron 3 of 26)	-32693	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
54485	chr12	92045471	92045830	+	0	NA	intron (NR_132341, intron 1 of 4)	AluSx|SINE|Alu	96063	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
105326	chr17	82589551	82590030	+	0	NA	intron (NM_004514, intron 8 of 8)	AluSz|SINE|Alu	58654	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
76503	chr15	74950101	74951030	+	0	NA	Intergenic	Intergenic	6207	NM_017793	54913		NM_017793	ENSG00000178718	RPP25	-	ribonuclease P and MRP subunit p25	protein-coding
73887	chr15	50427821	50428080	+	0	NA	intron (NM_001128610, intron 1 of 19)	AluJr4|SINE|Alu	3545	NM_005154	9101		NM_005154	ENSG00000138592	USP8	HumORF8|PITA4|SPG59|UBPY	ubiquitin specific peptidase 8	protein-coding
86938	chr16	68104351	68105450	+	0	NA	intron (NM_173165, intron 1 of 9)	AluY|SINE|Alu	19530	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
43586	chr11	83116401	83116650	+	0	NA	Intergenic	AluJr|SINE|Alu	-40606	NM_001346414	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
116179	chr19	17425771	17426030	+	0	NA	TTS (NM_001304547)	TTS (NM_001304547)	5853	NM_138401	93343		NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
47784	chr12	6563121	6563900	+	0	NA	exon (NM_001033714, exon 8 of 16)	exon (NM_001033714, exon 8 of 16)	4781	NM_001258309	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
178707	chr4	152678351	152678700	+	0	NA	intron (NM_152680, intron 1 of 6)	GA-rich|Low_complexity|Low_complexity	1472	NM_152680	201799		NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding
113117	chr19	8301901	8302380	+	0	NA	TTS (NM_001165895)	TTS (NM_001165895)	6218	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
130353	chr2	85012651	85013150	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	41739	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
153197	chr22	23851951	23852050	+	0	NA	intron (NR_003082, intron 4 of 4)	AluSz|SINE|Alu	-4703	NR_104248	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
163447	chr3	50600071	50600230	+	0	NA	Intergenic	Intergenic	11624	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
151177	chr21	44984021	44984550	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	9801	NR_033840	727699		NR_033840	ENSG00000234880	LINC00163	C21orf134|NCRNA00163|NLC1-A|NLC1A	long intergenic non-protein coding RNA 163	ncRNA
103954	chr17	79916251	79916350	+	0	NA	non-coding (NR_110850, exon 5 of 6)	non-coding (NR_110850, exon 5 of 6)	-3057	NR_110851	101928738		NR_110851	ENSG00000262188	LINC01978	-	long intergenic non-protein coding RNA 1978	ncRNA
191585	chr6	12020671	12021650	+	0	NA	intron (NM_002114, intron 2 of 8)	AluSx1|SINE|Alu	8848	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
181046	chr5	36071101	36071700	+	0	NA	Intergenic	Intergenic	-4518	NR_031764	167127		NM_174914	ENSG00000168671	UGT3A2	-	UDP glycosyltransferase family 3 member A2	protein-coding
124198	chr19	56350451	56350780	+	0	NA	intron (NM_001322072, intron 2 of 6)	intron (NM_001322072, intron 2 of 6)	-17484	NR_003127	147947		NM_194319	ENSG00000290720	ZNF542P	ZNF542	zinc finger protein 542, pseudogene	pseudo
161765	chr3	44863571	44864330	+	0	NA	intron (NM_144638, intron 1 of 2)	intron (NM_144638, intron 1 of 2)	2038	NM_144638	131616		NM_144638	ENSG00000169964	TMEM42	-	transmembrane protein 42	protein-coding
176872	chr4	102626471	102626800	+	0	NA	Intergenic	AluY|SINE|Alu	-124149	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
170200	chr3	183896421	183896880	+	0	NA	Intergenic	Intergenic	9850	NR_039650	100616127		NR_039650	ENSG00000263932	MIR4448	-	microRNA 4448	ncRNA
18471	chr1	161611571	161613230	+	0	NA	Intergenic	CpG	6341	NR_024151	3311		NR_024151	ENSG00000225217	HSPA7	HSP70B	heat shock protein family A (Hsp70) member 7 (pseudogene)	pseudo
147620	chr20	62139901	62140300	+	0	NA	intron (NM_002792, intron 2 of 6)	Tigger5b|DNA|TcMar-Tigger	3294	NM_002792	5688		NM_002792	ENSG00000101182	PSMA7	C6|HEL-S-276|HSPC|RC6-1|XAPC7	proteasome 20S subunit alpha 7	protein-coding
198515	chr6	106518951	106520400	+	0	NA	exon (NM_001624, exon 2 of 20)	exon (NM_001624, exon 2 of 20)	7820	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
66664	chr14	63896971	63898180	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	44571	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
122230	chr19	48990051	48990350	+	0	NA	intron (NR_027763, intron 1 of 14)	intron (NR_027763, intron 1 of 14)	3109	NR_027763	2997		NM_002103	ENSG00000104812	GYS1	GSY|GYS	glycogen synthase 1	protein-coding
234732	chrX	21943551	21944050	+	0	NA	intron (NM_004595, intron 1 of 10)	intron (NM_004595, intron 1 of 10)	3091	NM_004595	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
192137	chr6	16766071	16766500	+	0	NA	non-coding (NR_136240, exon 3 of 3)	non-coding (NR_136240, exon 3 of 3)	-4795	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
71824	chr15	22163121	22164050	+	0	NA	Intergenic	Intergenic	-2655	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
157621	chr22	46064471	46064630	+	0	NA	TTS (NR_148973)	TTS (NR_148973)	6471	NR_148973	642648		NR_148973		LINC02939	-	long intergenic non-protein coding RNA 2939	ncRNA
103604	chr17	78723171	78723580	+	0	NA	5' UTR (NM_001292018, exon 1 of 13)	5' UTR (NM_001292018, exon 1 of 13)	355	NM_001365041	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
205374	chr7	13993301	13993500	+	0	NA	Intergenic	Intergenic	-1975	NM_001163148	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
3724	chr1	16622371	16623200	+	0	NA	intron (NR_026752, intron 5 of 6)	AluSp|SINE|Alu	8121	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
216968	chr8	23020921	23021380	+	0	NA	TTS (NM_001374791)	TTS (NM_001374791)	21602	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
128361	chr2	54999071	54999230	+	0	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	11122	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133561	chr2	121335921	121336180	+	0	NA	Intergenic	Intergenic	-50848	NM_014553	29842		NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
102362	chr17	75517601	75517800	+	0	NA	intron (NM_207346, intron 5 of 10)	L2a|LINE|L2	1172	NM_207346	283989		NM_207346	ENSG00000182173	TSEN54	PCH2A|PCH4|PCH5|SEN54L|sen54	tRNA splicing endonuclease subunit 54	protein-coding
45701	chr11	119076871	119077230	+	0	NA	non-coding (NR_165448, exon 6 of 14)	non-coding (NR_165448, exon 6 of 14)	-7827	NM_001258209	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
41709	chr11	66647851	66648900	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluJb|SINE|Alu	9672	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
21686	chr1	206719201	206719600	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	34495	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
184625	chr5	107285721	107285980	+	0	NA	Intergenic	MIRc|SINE|MIR	-274836	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
46032	chr11	122666351	122667330	+	0	NA	intron (NM_032873, intron 1 of 13)	(CTTCT)n|Simple_repeat|Simple_repeat	11118	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
220306	chr8	98293821	98294350	+	0	NA	non-coding (NR_135747, exon 1 of 12)	non-coding (NR_135747, exon 1 of 12)	150	NR_135746	79815		NM_024759	ENSG00000104361	NIPAL2	NPAL2|SLC57A4	NIPA like domain containing 2	protein-coding
233252	chr9	137273271	137273430	+	0	NA	3' UTR (NM_015456, exon 13 of 13)	3' UTR (NM_015456, exon 13 of 13)	-4376	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
29565	chr10	71664001	71664350	+	0	NA	intron (NM_001171931, intron 13 of 24)	intron (NM_001171931, intron 13 of 24)	55603	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
82603	chr16	18898651	18899000	+	0	NA	intron (NM_015092, intron 1 of 62)	intron (NM_015092, intron 1 of 62)	27583	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
129894	chr2	73204151	73204730	+	0	NA	intron (NM_001134462, intron 1 of 2)	intron (NM_001134462, intron 1 of 2)	1866	NM_001134462	344022		NM_001134462	ENSG00000214513	NOTO	-	notochord homeobox	protein-coding
170081	chr3	182976321	182976900	+	0	NA	intron (NM_001308101, intron 1 of 6)	L2a|LINE|L2	3928	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
61060	chr13	48265121	48266050	+	0	NA	3' UTR (NM_021999, exon 6 of 6)	3' UTR (NM_021999, exon 6 of 6)	32379	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
145355	chr20	41147921	41148600	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-10260	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
235540	chrX	47235851	47236350	+	0	NA	intron (NM_001371072, intron 1 of 20)	L1MB5|LINE|L1	3091	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
150922	chr21	44239351	44239650	+	0	NA	intron (NM_001365759, intron 1 of 6)	intron (NM_001365759, intron 1 of 6)	1443	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
68576	chr14	89429321	89429830	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	12221	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
81635	chr16	10882001	10882200	+	0	NA	intron (NM_001379334, intron 1 of 19)	L1MB3|LINE|L1	3133	NM_001379334	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
31547	chr10	97037171	97037930	+	0	NA	intron (NM_003061, intron 22 of 36)	intron (NM_003061, intron 22 of 36)	-65206	NR_038330	100505540		NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
183393	chr5	77770471	77770850	+	0	NA	intron (NM_001297738, intron 1 of 2)	intron (NM_001297738, intron 1 of 2)	5679	NM_004607	6902		NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
122384	chr19	49408001	49408430	+	0	NA	intron (NM_144688, intron 12 of 19)	intron (NM_144688, intron 12 of 19)	15226	NM_178449	113091		NM_178449	ENSG00000142538	PTH2	TIP39	parathyroid hormone 2	protein-coding
22484	chr1	221723101	221723680	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	13510	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
230420	chr9	128129971	128131130	+	0	NA	TTS (NR_024425)	TTS (NR_024425)	2021	NR_024425	389791		NM_001013652	ENSG00000232850	PTGES2-AS1	-	PTGES2 antisense RNA 1 (head to head)	ncRNA
224948	chr9	33039551	33039650	+	0	NA	3' UTR (NM_001539, exon 9 of 9)	3' UTR (NM_001539, exon 9 of 9)	14327	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
29590	chr10	71733951	71734250	+	0	NA	intron (NM_022124, intron 31 of 67)	L2c|LINE|L2	3750	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
197039	chr6	53346621	53346930	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	2175	NM_001301856	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
61095	chr13	48416321	48416580	+	0	NA	5' UTR (NM_005767, exon 5 of 7)	5' UTR (NM_005767, exon 5 of 7)	-3337	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
103703	chr17	78821471	78821630	+	0	NA	intron (NR_169585, intron 7 of 19)	AluSx|SINE|Alu	19264	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
2053	chr1	7885571	7885930	+	0	NA	Intergenic	Intergenic	-32259	NM_021995	10911		NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
119529	chr19	40573001	40573400	+	0	NA	intron (NM_020971, intron 35 of 35)	AluJb|SINE|Alu	-3673	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
78587	chr15	93038201	93038600	+	0	NA	3' UTR (NM_001166288, exon 4 of 4)	3' UTR (NM_001166288, exon 4 of 4)	34756	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
91682	chr17	5587221	5588300	+	0	NA	Intergenic	Intergenic	-3251	NM_014922	22861		NM_014922	ENSG00000091592	NLRP1	AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|JRRP|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
48886	chr12	12489001	12489400	+	0	NA	intron (NM_030640, intron 4 of 6)	MamRTE1|LINE|RTE-BovB	73663	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
221261	chr8	122786601	122787230	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	5260	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
183099	chr5	74626701	74627080	+	0	NA	TTS (NM_001256574)	TTS (NM_001256574)	-13133	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
80132	chr16	2075101	2075500	+	0	NA	intron (NM_001370404, intron 22 of 40)	AluY|SINE|Alu	14984	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
216640	chr8	22114501	22115300	+	0	NA	3' UTR (NM_005144, exon 19 of 19)	3' UTR (NM_005144, exon 19 of 19)	-5481	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
97121	chr17	42529101	42529300	+	0	NA	Intergenic	Intergenic	-7041	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
193851	chr6	31538301	31539350	+	0	NA	exon (NM_004640, exon 4 of 11).5	exon (NM_004640, exon 4 of 11).5	2353	NR_003065	692199		NR_003065	ENSG00000265236	SNORD84	U84	small nucleolar RNA, C/D box 84	snoRNA
215221	chr7	156607271	156608130	+	0	NA	intron (NR_026865, intron 1 of 3)	CpG	-4505	NR_103858	100506380		NM_032625	ENSG00000182648	RNF32-DT	C7orf13|LINC01006|MY040	RNF32 divergent transcript	ncRNA
54296	chr12	89351901	89353070	+	0	NA	promoter-TSS (NM_001946)	promoter-TSS (NM_001946)	16	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
116146	chr19	17380071	17380430	+	0	NA	Intergenic	MIRb|SINE|MIR	-2908	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
121552	chr19	47252851	47253180	+	0	NA	Intergenic	AluSg7|SINE|Alu	-3510	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
167289	chr3	128648051	128648350	+	0	NA	intron (NM_002950, intron 1 of 9)	AluSc|SINE|Alu	2618	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
235273	chrX	41862401	41862850	+	0	NA	intron (NM_001126055, intron 1 of 24)	L2c|LINE|L2	60409	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
38490	chr11	45869721	45869980	+	0	NA	intron (NM_021117, intron 7 of 11)	intron (NM_021117, intron 7 of 11)	-15801	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
144459	chr20	35561101	35561950	+	0	NA	intron (NR_119376, intron 38 of 42)	MLT1K|LTR|ERVL-MaLR	19447	NM_015966	51614		NM_015966	ENSG00000125991	ERGIC3	C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2	ERGIC and golgi 3	protein-coding
84380	chr16	30282601	30283000	+	0	NA	Intergenic	Intergenic	-34387	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
122017	chr19	48608421	48609280	+	0	NA	intron (NM_017708, intron 5 of 6)	MER20|DNA|hAT-Charlie	2108	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
117756	chr19	29672701	29674050	+	0	NA	intron (NM_024310, intron 1 of 1)	LTR16C|LTR|ERVL	7914	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
90185	chr17	379951	382280	+	0	NA	Intergenic	Intergenic	-28273	NM_001190411	9501		NM_006987	ENSG00000181031	RPH3AL	NOC2	rabphilin 3A like (without C2 domains)	protein-coding
150044	chr21	37373351	37373830	+	0	NA	intron (NM_001347723, intron 1 of 10)	MLT1J|LTR|ERVL-MaLR	6033	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
183142	chr5	75032951	75033050	+	0	NA	intron (NM_001366737, intron 3 of 3)	intron (NM_001366737, intron 3 of 3)	19558	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
55932	chr12	109892401	109893480	+	0	NA	Intergenic	Intergenic	-7334	NM_001143852	84260		NM_032300	ENSG00000139437	TCHP	TpMs	trichoplein keratin filament binding	protein-coding
97828	chr17	44904571	44904930	+	0	NA	TTS (NM_001363846)	TTS (NM_001363846)	920	NM_001258400	100528020		NM_001258400	ENSG00000214447	FAM187A	-	family with sequence similarity 187 member A	protein-coding
197333	chr6	73393701	73393900	+	0	NA	Intergenic	AluJr|SINE|Alu	-1028	NM_018665	55510		NM_018665	ENSG00000080007	DDX43	CT13|HAGE	DEAD-box helicase 43	protein-coding
38465	chr11	45664251	45664730	+	0	NA	intron (NM_003654, intron 1 of 3)	intron (NM_003654, intron 1 of 3)	1132	NM_003654	8534		NM_003654	ENSG00000175264	CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate sulfotransferase 1	protein-coding
65556	chr14	51934401	51934800	+	0	NA	intron (NM_053064, intron 2 of 3)	MIR3|SINE|MIR	-16029	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
82069	chr16	13957851	13957950	+	0	NA	Intergenic	Intergenic	37746	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
202963	chr6	161244701	161245100	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	29161	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
52429	chr12	55825471	55825830	+	0	NA	intron (NM_032364, intron 2 of 6)	AluY|SINE|Alu	-3958	NR_036479	440104		NM_001013700	ENSG00000293491	TMEM198B	-	transmembrane protein 198B (pseudogene)	pseudo
218762	chr8	58964371	58964830	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	154547	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
8268	chr1	39872501	39872700	+	0	NA	intron (NM_017646, intron 1 of 10)	L1MD3|LINE|L1	10904	NM_017646	54802		NM_017646	ENSG00000043514	TRIT1	COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
34532	chr10	132847851	132848350	+	0	NA	intron (NM_001200049, intron 41 of 57)	L1M5|LINE|L1	-61953	NM_177400	84504		NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B|SPAX8	NK6 homeobox 2	protein-coding
138911	chr2	218101351	218101450	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-23894	NM_001168298	3579		NM_001557	ENSG00000180871	CXCR2	CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB|WHIMS2	C-X-C motif chemokine receptor 2	protein-coding
134051	chr2	131156451	131157080	+	0	NA	Intergenic	Intergenic	51918	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
25718	chr10	9007671	9008430	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	110061	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
224660	chr9	21028171	21028780	+	0	NA	intron (NM_001321903, intron 2 of 8)	intron (NM_001321903, intron 2 of 8)	3165	NM_001321883	401494		NM_001010915	ENSG00000188921	HACD4	PTPLAD2	3-hydroxyacyl-CoA dehydratase 4	protein-coding
127119	chr2	37652051	37652700	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	19267	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
124166	chr19	56112871	56113430	+	0	NA	intron (NM_001351682, intron 1 of 1)	L1MB7|LINE|L1	8145	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
219544	chr8	76999891	77001200	+	0	NA	promoter-TSS (NM_001079867)	promoter-TSS (NM_001079867)	-257	NM_001079867	5828		NM_000318	ENSG00000164751	PEX2	PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3	peroxisomal biogenesis factor 2	protein-coding
193965	chr6	31699621	31700080	+	0	NA	intron (NR_033488, intron 4 of 19).5	AluSx1|SINE|Alu	1241	NR_039789	100616230		NR_039789	ENSG00000266776	MIR4646	mir-4646	microRNA 4646	ncRNA
131981	chr2	100278951	100279250	+	0	NA	3' UTR (NM_198461, exon 12 of 12)	3' UTR (NM_198461, exon 12 of 12)	43401	NM_001371783	164832		NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
160106	chr3	19376051	19376150	+	0	NA	intron (NM_144633, intron 5 of 15)	L1PA2|LINE|L1	-61169	NR_039954	100616291		NR_039954	ENSG00000271898	MIR4791	mir-4791	microRNA 4791	ncRNA
17877	chr1	160047671	160047830	+	0	NA	intron (NM_002241, intron 1 of 1)	intron (NM_002241, intron 1 of 1)	-15760	NM_145167	93183		NM_145167	ENSG00000143315	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis class M	protein-coding
83804	chr16	28826621	28827100	+	0	NA	intron (NM_148416, intron 5 of 22)	intron (NM_148416, intron 5 of 22)	3812	NM_007245	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
224589	chr9	20319451	20320730	+	0	NA	Intergenic	Intergenic	91148	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
15451	chr1	150322601	150323200	+	0	NA	intron (NR_146768, intron 1 of 15)	AluSx|SINE|Alu	1367	NM_004698	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
4582	chr1	22071201	22071430	+	0	NA	intron (NM_044472, intron 1 of 5)	AluY|SINE|Alu	18606	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
11459	chr1	89890071	89890650	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	68421	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
161839	chr3	45690431	45691200	+	0	NA	intron (NM_001319073, intron 2 of 20)	intron (NM_001319073, intron 2 of 20)	1419	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
216996	chr8	23118851	23119500	+	0	NA	Intergenic	Intergenic	16254	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
222214	chr8	133064471	133065450	+	0	NA	intron (NM_001045557, intron 1 of 7)	intron (NM_001045557, intron 1 of 7)	-4606	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
89611	chr16	89301401	89302100	+	0	NA	intron (NR_045839, intron 5 of 9)	intron (NR_045839, intron 5 of 9)	5622	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
122124	chr19	48816001	48816850	+	0	NA	intron (NM_016246, intron 5 of 8)	L2a|LINE|L2	-5396	NM_001190	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
149008	chr21	14528421	14528950	+	0	NA	intron (NM_001286523, intron 1 of 8)	intron (NM_001286523, intron 1 of 8)	17630	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
185893	chr5	132751521	132752650	+	0	NA	exon (NM_001098811, exon 10 of 10)	exon (NM_001098811, exon 10 of 10)	4640	NM_001287252	645121		NM_001039780	ENSG00000205089	CCNI2	-	cyclin I family member 2	protein-coding
177792	chr4	123304401	123304600	+	0	NA	intron (NM_001345856, intron 15 of 15)	intron (NM_001345856, intron 15 of 15)	-92295	NM_001258038	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
228840	chr9	112178501	112179180	+	0	NA	Intergenic	L1MB3|LINE|L1	-3543	NM_001282643	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
211172	chr7	102587001	102587200	+	0	NA	intron (NM_001079877, intron 17 of 19)	(AAC)n|Simple_repeat|Simple_repeat	-14479	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
143855	chr20	32532751	32533400	+	0	NA	intron (NM_001256798, intron 1 of 10)	FLAM_A|SINE|Alu	23116	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
120995	chr19	45766521	45767150	+	0	NA	promoter-TSS (NR_147193)	promoter-TSS (NR_147193)	-961	NR_147193	109729182		NR_147193	ENSG00000267395	DM1-AS	-	DM1 locus antisense RNA	ncRNA
106515	chr18	21073821	21074080	+	0	NA	intron (NM_005406, intron 1 of 32)	AluJo|SINE|Alu	37863	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
86657	chr16	67464571	67464730	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	16507	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
199426	chr6	116765551	116765650	+	0	NA	5' UTR (NM_001085480, exon 1 of 4)	5' UTR (NM_001085480, exon 1 of 4)	119	NM_001085480	221303		NM_001085480	ENSG00000183807	FAM162B	C6orf189|bA86F4.2	family with sequence similarity 162 member B	protein-coding
233575	chrX	301571	302600	+	0	NA	non-coding (NR_163416, exon 8 of 8)	non-coding (NR_163416, exon 8 of 8)	16734	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
228375	chr9	99108401	99108900	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	3537	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
42021	chr11	67422671	67423200	+	0	NA	intron (NM_001166222, intron 9 of 9)	intron (NM_001166222, intron 9 of 9)	-5559	NM_003952	6199		NM_003952	ENSG00000175634	RPS6KB2	KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb	ribosomal protein S6 kinase B2	protein-coding
2038	chr1	7706551	7706650	+	0	NA	intron (NM_001349626, intron 1 of 12)	intron (NM_001349626, intron 1 of 12)	1864	NM_001349615	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
78337	chr15	91019521	91019780	+	0	NA	intron (NM_018668, intron 1 of 22)	intron (NM_018668, intron 1 of 22)	2944	NM_018668	26276		NM_018668	ENSG00000184056	VPS33B	KDIDAR|PFIC12	VPS33B late endosome and lysosome associated	protein-coding
227229	chr9	89154621	89154880	+	0	NA	intron (NM_016848, intron 1 of 11)	intron (NM_016848, intron 1 of 11)	24068	NM_016848	53358		NM_016848	ENSG00000148082	SHC3	N-Shc|NSHC|RAI|SHCC	SHC adaptor protein 3	protein-coding
17116	chr1	156160501	156161750	+	0	NA	intron (NM_001370567, intron 7 of 13)	(GGCGG)n|Simple_repeat|Simple_repeat	6577	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
188567	chr5	157072501	157072700	+	0	NA	Intergenic	Intergenic	-13484	NM_001173393	26762		NM_012206	ENSG00000113249	HAVCR1	CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
219366	chr8	70369801	70370200	+	0	NA	intron (NM_001321703, intron 1 of 22)	AluJo|SINE|Alu	33390	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
176059	chr4	82428751	82429800	+	0	NA	exon (NM_001207000, exon 1 of 7)	exon (NM_001207000, exon 1 of 7)	950	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
195678	chr6	38209401	38209600	+	0	NA	intron (NM_152733, intron 8 of 9)	intron (NM_152733, intron 8 of 9)	-272096	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
123413	chr19	54029851	54030200	+	0	NA	Intergenic	Intergenic	33872	NM_001288791	284415		NM_198481	ENSG00000189068	VSTM1	SIRL-1|SIRL1|UNQ3033	V-set and transmembrane domain containing 1	protein-coding
239131	chrY	11311321	11311600	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1110130	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
143961	chr20	32829201	32829730	+	0	NA	intron (NM_012325, intron 2 of 6)	intron (NM_012325, intron 2 of 6)	9511	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
100008	chr17	57875721	57875980	+	0	NA	intron (NM_001292025, intron 3 of 10)	intron (NM_001292025, intron 3 of 10)	-25806	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
181780	chr5	50749021	50749400	+	0	NA	intron (NM_024615, intron 2 of 25)	L1MEf|LINE|L1	81796	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
31151	chr10	90857221	90858480	+	0	NA	5' UTR (NM_019859, exon 1 of 4)	5' UTR (NM_019859, exon 1 of 4)	189	NM_019859	3363		NM_000872	ENSG00000148680	HTR7	5-HT7	5-hydroxytryptamine receptor 7	protein-coding
59285	chr13	24250921	24252680	+	0	NA	TTS (NR_046531)	TTS (NR_046531)	2639	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
35159	chr11	762701	763330	+	0	NA	intron (NM_006755, intron 4 of 7)	intron (NM_006755, intron 4 of 7)	14472	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
73761	chr15	45460401	45460600	+	0	NA	Intergenic	AluJr4|SINE|Alu	27450	NR_030599	100126311		NR_030599	ENSG00000284386	MIR147B	MIRN147B|mir-147b	microRNA 147b	ncRNA
62966	chr13	112288651	112288750	+	0	NA	Intergenic	Intergenic	-15700	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
233462	chr9	137672751	137673430	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	54085	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
164529	chr3	63934451	63935450	+	0	NA	intron (NM_001177387, intron 3 of 12)	MER20|DNA|hAT-Charlie	22838	NM_001377406	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
145190	chr20	38882121	38882430	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-44142	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
210927	chr7	101233751	101234300	+	0	NA	intron (NM_014343, intron 2 of 4)	intron (NM_014343, intron 2 of 4)	3777	NM_014343	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
8186	chr1	39566701	39566900	+	0	NA	TTS (NR_002983)	TTS (NR_002983)	710	NR_002983	677834		NR_002983	ENSG00000201457	SNORA55	ACA55	small nucleolar RNA, H/ACA box 55	snoRNA
3637	chr1	16386201	16386400	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	19058	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
46018	chr11	122505771	122505950	+	0	NA	Intergenic	Intergenic	-82989	NR_137179	399959		NR_024430	ENSG00000255248	MIR100HG	AGD1|linc-NeD125|lncRNA-N2	mir-100-let-7a-2-mir-125b-1 cluster host gene	ncRNA
165712	chr3	102224451	102224750	+	0	NA	Intergenic	Intergenic	60895	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
206883	chr7	37683601	37684200	+	0	NA	5' UTR (NM_181791, exon 1 of 4)	5' UTR (NM_181791, exon 1 of 4)	134	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
172747	chr4	2843001	2845100	+	0	NA	promoter-TSS (NM_001354758)	promoter-TSS (NM_001354758)	-100	NM_001286645	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
220145	chr8	94941721	94942380	+	0	NA	intron (NM_033285, intron 1 of 3)	AluY|SINE|Alu	7328	NM_001135733	94241		NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
159288	chr3	12975971	12976530	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-8520	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
31858	chr10	99994151	99994730	+	0	NA	intron (NM_015221, intron 1 of 16)	intron (NM_015221, intron 1 of 16)	15507	NM_015221	23268		NM_015221	ENSG00000107554	DNMBP	ARHGEF36|CTRCT48|TUBA	dynamin binding protein	protein-coding
54688	chr12	93413871	93414030	+	0	NA	intron (NM_003348, intron 1 of 3)	AluSx|SINE|Alu	27997	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
188710	chr5	157310801	157311200	+	0	NA	intron (NM_014376, intron 10 of 30)	intron (NM_014376, intron 10 of 30)	34677	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
89366	chr16	88780551	88780650	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	4620	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
115111	chr19	14351071	14351430	+	0	NA	intron (NR_134908, intron 1 of 3)	intron (NR_134908, intron 1 of 3)	12740	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
155191	chr22	37807471	37808500	+	0	NA	promoter-TSS (NM_014291)	promoter-TSS (NM_014291)	51	NM_014291	23464		NM_014291	ENSG00000100116	GCAT	KBL	glycine C-acetyltransferase	protein-coding
203874	chr7	1473721	1474850	+	0	NA	exon (NM_001080453, exon 41 of 48)	exon (NM_001080453, exon 41 of 48)	-14815	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
162349	chr3	47813501	47813700	+	0	NA	intron (NM_014966, intron 3 of 22)	intron (NM_014966, intron 3 of 22)	10462	NR_075079	22907		NM_014966	ENSG00000132153	DHX30	DDX30|NEDMIAL|RETCOR	DExH-box helicase 30	protein-coding
136814	chr2	181889851	181890550	+	0	NA	Intergenic	Intergenic	-1530	NM_001287504	6744		NM_006751	ENSG00000138434	ITPRID2	CS-1|CS1|KRAP|SPAG13|SSFA2	ITPR interacting domain containing 2	protein-coding
153960	chr22	30356321	30357700	+	0	NA	promoter-TSS (NM_005877)	promoter-TSS (NM_005877)	-116	NM_005877	10291		NM_005877	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	splicing factor 3a subunit 1	protein-coding
125936	chr2	25169671	25169830	+	0	NA	promoter-TSS (NM_001035256)	promoter-TSS (NM_001035256)	-899	NM_001035256	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
118590	chr19	36488701	36490800	+	0	NA	promoter-TSS (NM_032838)	promoter-TSS (NM_032838)	123	NR_036504	728752		NR_036504	ENSG00000267309	ZNF566-AS1	-	ZNF566 antisense RNA 1	ncRNA
158510	chr3	3128971	3129130	+	0	NA	exon (NM_001367323, exon 2 of 8)	exon (NM_001367323, exon 2 of 8)	2110	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
222092	chr8	130440371	130440950	+	0	NA	intron (NM_001362924, intron 1 of 30)	L2b|LINE|L2	3000	NM_001362924	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
208091	chr7	56100721	56101400	+	0	NA	TTS (NM_016139)	TTS (NM_016139)	5416	NM_016139	51142		NM_016139	ENSG00000106153	CHCHD2	C7orf17|MIX17B|MNRR1|NS2TP|PARK22	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding
30130	chr10	74049721	74049980	+	0	NA	intron (NM_014000, intron 2 of 21)	intron (NM_014000, intron 2 of 21)	51734	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
36793	chr11	9506271	9507070	+	0	NA	intron (NM_001282656, intron 11 of 15)	intron (NM_001282656, intron 11 of 15)	45658	NM_003442	7702		NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
151669	chr22	17095571	17095930	+	0	NA	intron (NM_014339, intron 1 of 12)	intron (NM_014339, intron 1 of 12)	10750	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
127244	chr2	38677371	38678100	+	0	NA	intron (NM_138801, intron 2 of 6)	intron (NM_138801, intron 2 of 6)	11621	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
94281	chr17	28714221	28715050	+	0	NA	3' UTR (NM_001256276, exon 10 of 10)	3' UTR (NM_001256276, exon 10 of 10)	-2747	NM_152465	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
209635	chr7	77739521	77739800	+	0	NA	intron (NM_198467, intron 2 of 7)	AluSz|SINE|Alu	-42315	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
174770	chr4	47686321	47686600	+	0	NA	intron (NM_006587, intron 6 of 21)	intron (NM_006587, intron 6 of 21)	33791	NR_107020	102467004		NR_107020	ENSG00000277388	MIR8053	hsa-mir-8053	microRNA 8053	ncRNA
141581	chr2	241607501	241608080	+	0	NA	intron (NM_015963, intron 2 of 5)	intron (NM_015963, intron 2 of 5)	9711	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
88492	chr16	85157751	85158450	+	0	NA	Intergenic	LTR33A|LTR|ERVL	20950	NR_033984	400548		NR_033984	ENSG00000278214	LINC02139	-	long intergenic non-protein coding RNA 2139	ncRNA
3919	chr1	17412971	17413330	+	0	NA	exon (NM_001136204, exon 9 of 12)	exon (NM_001136204, exon 9 of 12)	25386	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
34382	chr10	132311601	132312000	+	0	NA	intron (NM_001318878, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	-3850	NM_173575	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
162043	chr3	46701171	46702330	+	0	NA	intron (NM_147196, intron 1 of 3)	intron (NM_147196, intron 1 of 3)	358	NM_147196	259236		NM_147196	ENSG00000181585	TMIE	DFNB6	transmembrane inner ear	protein-coding
215785	chr8	2156021	2156730	+	0	NA	Intergenic	Intergenic	79786	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
236830	chrX	79185921	79186250	+	0	NA	Intergenic	Intergenic	41397	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
34518	chr10	132634471	132634830	+	0	NA	intron (NM_005539, intron 2 of 15)	L1MC4|LINE|L1	-46625	NM_001321042	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
22866	chr1	225576221	225576680	+	0	NA	intron (NM_001377481, intron 1 of 15)	intron (NM_001377481, intron 1 of 15)	76673	NM_018212	55740		NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	ENAH actin regulator	protein-coding
75923	chr15	70100401	70101300	+	0	NA	Intergenic	CpG-8376	-2933	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
20303	chr1	197319471	197320030	+	0	NA	intron (NM_001257965, intron 3 of 14)	intron (NM_001257965, intron 3 of 14)	51498	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
222149	chr8	132674951	132676130	+	0	NA	promoter-TSS (NR_135905)	promoter-TSS (NR_135905)	5	NR_135908	23639		NM_012472	ENSG00000129295	DNAAF11	CILD19|LRRC6|LRTP|TSLRP|tilB	dynein axonemal assembly factor 11	protein-coding
148836	chr21	8396601	8398100	+	0	NA	non-coding (NR_146154, exon 1 of 1)	non-coding (NR_146154, exon 1 of 1)	424	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
38179	chr11	36357471	36358180	+	0	NA	intron (NM_001160167, intron 1 of 8)	Tigger1|DNA|TcMar-Tigger	-18160	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
137435	chr2	196851251	196851350	+	0	NA	intron (NM_024989, intron 20 of 26)	MER65A|LTR|ERV1	-41945	NM_213608	401027		NM_213608	ENSG00000187944	C2orf66	IIDS6411|UNQ6411	chromosome 2 open reading frame 66	protein-coding
78906	chr15	101137221	101137780	+	0	NA	Intergenic	Intergenic	114548	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
121275	chr19	46710421	46711350	+	0	NA	intron (NM_001079881, intron 4 of 18)	CpG	-1531	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
151580	chr21	46628571	46628730	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-6945	NM_001286677	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
75892	chr15	69760651	69761780	+	0	NA	Intergenic	Intergenic	-74019	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
160870	chr3	33435571	33436130	+	0	NA	intron (NM_014517, intron 1 of 15)	MER47B|DNA|TcMar-Tigger	4528	NM_001128160	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
25732	chr10	9052721	9052980	+	0	NA	Intergenic	LOR1a|LTR|ERV1	154861	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
166202	chr3	111860301	111860830	+	0	NA	intron (NM_001134439, intron 1 of 17)	intron (NM_001134439, intron 1 of 17)	738	NM_001134439	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
48464	chr12	9756201	9756400	+	0	NA	exon (NM_001781, exon 2 of 5)	exon (NM_001781, exon 2 of 5)	4601	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
160345	chr3	27720921	27722950	+	0	NA	exon (NM_005442, exon 1 of 6)	exon (NM_005442, exon 1 of 6)	388	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
91043	chr17	2884951	2885250	+	0	NA	intron (NM_001100398, intron 2 of 23)	AluSx3|SINE|Alu	80795	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
26001	chr10	12122351	12123200	+	0	NA	3' UTR (NM_018706, exon 17 of 17)	3' UTR (NM_018706, exon 17 of 17)	-6866	NM_001142628	55176		NM_018144	ENSG00000065665	SEC61A2	-	SEC61 translocon subunit alpha 2	protein-coding
213076	chr7	131087551	131088250	+	0	NA	intron (NR_109852, intron 2 of 5)	AluJo|SINE|Alu	19130	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
148511	chr20	64086771	64086930	+	0	NA	intron (NM_001200019, intron 2 of 5)	intron (NM_001200019, intron 2 of 5)	1851	NM_001200019	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
84530	chr16	30522901	30523480	+	0	NA	TTS (NM_001114380)	TTS (NM_001114380)	3376	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
168175	chr3	140731751	140731850	+	0	NA	Intergenic	Intergenic	53736	NM_152616	287015		NM_152616	ENSG00000155890	TRIM42	PPP1R40|T4A1	tripartite motif containing 42	protein-coding
16959	chr1	155936601	155937430	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2602	NM_014949	22889		NM_014949	ENSG00000132680	KHDC4	BLOM7|KIAA0907|SNORA80EHG	KH domain containing 4, pre-mRNA splicing factor	protein-coding
186979	chr5	139698721	139699250	+	0	NA	Intergenic	Intergenic	23542	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
55918	chr12	109777501	109777800	+	0	NA	Intergenic	Intergenic	-4163	NR_026661	84983		NM_032897	ENSG00000255650	FAM222A-AS1	-	FAM222A antisense RNA 1	ncRNA
80811	chr16	3455171	3455700	+	0	NA	intron (NM_001317093, intron 2 of 6)	AluY|SINE|Alu	-2610	NM_001317094	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
153648	chr22	28796551	28797050	+	0	NA	intron (NM_005080, intron 3 of 4)	intron (NM_005080, intron 3 of 4)	3772	NM_001079539	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
183917	chr5	87394471	87394900	+	0	NA	intron (NM_001239, intron 8 of 8)	intron (NM_001239, intron 8 of 8)	18219	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
122999	chr19	50922071	50922570	+	0	NA	Intergenic	MIR|SINE|MIR	-11582	NM_004917	9622		NM_004917	ENSG00000167749	KLK4	AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein	kallikrein related peptidase 4	protein-coding
212888	chr7	130881721	130882380	+	0	NA	non-coding (NR_034120, exon 4 of 4)	non-coding (NR_034120, exon 4 of 4)	-4511	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
40447	chr11	64206051	64207100	+	0	NA	promoter-TSS (NM_001382361)	promoter-TSS (NM_001382361)	-146	NM_001382361	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
195351	chr6	36633571	36633930	+	0	NA	Intergenic	Intergenic	-11238	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
116305	chr19	17781001	17781200	+	0	NA	intron (NR_169234, intron 20 of 28)	intron (NR_169234, intron 20 of 28)	-14038	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
21298	chr1	204479451	204480000	+	0	NA	intron (NM_001377334, intron 1 of 32)	intron (NM_001377334, intron 1 of 32)	15080	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
110242	chr19	1780421	1781250	+	0	NA	3' UTR (NM_001080488, exon 2 of 2)	3' UTR (NM_001080488, exon 2 of 2)	27329	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
148497	chr20	64070651	64070950	+	0	NA	intron (NM_198723, intron 9 of 10)	intron (NM_198723, intron 9 of 10)	6210	NR_106871	102466741		NR_106871	ENSG00000274034	MIR6813	hsa-mir-6813	microRNA 6813	ncRNA
175528	chr4	74447521	74447980	+	0	NA	intron (NM_001657, intron 2 of 5)	intron (NM_001657, intron 2 of 5)	2614	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
19033	chr1	169686621	169687080	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	22007	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
158767	chr3	9399751	9400530	+	0	NA	intron (NM_001349451, intron 1 of 25)	intron (NM_001349451, intron 1 of 25)	2525	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
144269	chr20	34563651	34564180	+	0	NA	intron (NM_080476, intron 11 of 11)	L1MD3|LINE|L1	5197	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
176353	chr4	88383771	88384000	+	0	NA	intron (NM_017912, intron 2 of 22)	intron (NM_017912, intron 2 of 22)	5033	NM_001165136	55008		NM_017912	ENSG00000138642	HERC6	-	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein-coding
80118	chr16	2032651	2032950	+	0	NA	promoter-TSS (NM_001252073)	promoter-TSS (NM_001252073)	-494	NM_001252073	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
227047	chr9	83971521	83971980	+	0	NA	intron (NM_031263, intron 11 of 16)	intron (NM_031263, intron 11 of 16)	-1893	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
92862	chr17	16380491	16382330	+	0	NA	promoter-TSS (NM_001281718)	promoter-TSS (NM_001281718)	-55	NM_001281717	7314		NM_018955	ENSG00000170315	UBB	HEL-S-50	ubiquitin B	protein-coding
147216	chr20	57387121	57388230	+	0	NA	intron (NR_149006, intron 1 of 1)	intron (NR_149006, intron 1 of 1)	-3721	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
221451	chr8	124368251	124368900	+	0	NA	intron (NM_194291, intron 1 of 6)	MLT1F|LTR|ERVL-MaLR	4124	NM_194291	157378		NM_194291	ENSG00000164983	TMEM65	-	transmembrane protein 65	protein-coding
170448	chr3	185909801	185910000	+	0	NA	Intergenic	L1PA5|LINE|L1	28114	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
211404	chr7	105032851	105033280	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	18860	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
207738	chr7	48090521	48090930	+	0	NA	intron (NM_001287426, intron 3 of 9)	intron (NM_001287426, intron 3 of 9)	1460	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
95736	chr17	38586771	38587580	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	18777	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
219398	chr8	70601051	70601150	+	0	NA	intron (NM_001317804, intron 2 of 11)	L2b|LINE|L2	6569	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
63319	chr13	114004321	114004650	+	0	NA	intron (NM_001320822, intron 18 of 23).2	L1PB4|LINE|L1	-30409	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
53256	chr12	62651071	62651330	+	0	NA	intron (NM_020700, intron 9 of 9)	U13_|snRNA|snRNA	47514	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
60002	chr13	32429701	32429900	+	0	NA	Intergenic	AluJr|SINE|Alu	-1670	NM_001353628	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
195857	chr6	41505021	41505480	+	0	NA	intron (NR_120347, intron 2 of 2)	CpG	2806	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
213227	chr7	133480871	133481230	+	0	NA	intron (NM_021807, intron 9 of 17)	AluJb|SINE|Alu	190169	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
162376	chr3	48015971	48016130	+	0	NA	intron (NM_001385690, intron 1 of 5)	intron (NM_001385690, intron 1 of 5)	366	NM_001385692	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
130872	chr2	87408151	87408600	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-47052	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
63117	chr13	113330051	113330580	+	0	NA	intron (NM_024719, intron 5 of 7)	intron (NM_024719, intron 5 of 7)	-21358	NR_120385	100874068		NR_046541		GRTP1-AS1	-	GRTP1 antisense RNA 1	ncRNA
146489	chr20	49846171	49846600	+	0	NA	intron (NR_048540, intron 5 of 11)	intron (NR_048540, intron 5 of 11)	-17474	NR_162136	113219455		NR_162136		MIR12122	-	microRNA 12122	ncRNA
136200	chr2	174567771	174568130	+	0	NA	exon (NM_001375835, exon 6 of 9)	exon (NM_001375835, exon 6 of 9)	-9878	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
140261	chr2	232299901	232300400	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-78601	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
66973	chr14	66359401	66359700	+	0	NA	Intergenic	Intergenic	-126821	NR_110307	440184		NM_001004331	ENSG00000196553	CCDC196	C14orf53|LINC00238|NCRNA00238	coiled-coil domain containing 196	protein-coding
8865	chr1	43450321	43450680	+	0	NA	TTS (NM_031207)	TTS (NM_031207)	-1856	NR_046744	100873952		NR_046744	ENSG00000229372	SZT2-AS1	-	SZT2 antisense RNA 1	ncRNA
213343	chr7	135554151	135555050	+	0	NA	Intergenic	AluSp|SINE|Alu	-3317	NM_001329434	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
174123	chr4	36219121	36219380	+	0	NA	intron (NR_146894, intron 2 of 32)	L1ME1|LINE|L1	24689	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
3080	chr1	12188421	12188680	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	-3163	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
202538	chr6	158632171	158632550	+	0	NA	non-coding (NR_164859, exon 17 of 17)	non-coding (NR_164859, exon 17 of 17)	12383	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
43907	chr11	88886801	88887080	+	0	NA	intron (NM_001143831, intron 2 of 9)	HUERS-P3b-int|LTR|ERV1	176719	NM_000842	2915		NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
192459	chr6	24914301	24915700	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-3952	NM_014722	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
124647	chr2	2543201	2543400	+	0	NA	Intergenic	Intergenic	-212025	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
53776	chr12	68807351	68809000	+	0	NA	promoter-TSS (NM_001145340)	promoter-TSS (NM_001145340)	3	NM_001145339	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
57574	chr12	122264521	122264780	+	0	NA	intron (NM_001351020, intron 1 of 10)	AluSx|SINE|Alu	1844	NM_022916	65082		NM_022916	ENSG00000139719	VPS33A	MPSPS	VPS33A core subunit of CORVET and HOPS complexes	protein-coding
159693	chr3	15590871	15591030	+	0	NA	intron (NM_001284413, intron 3 of 15)	AluSx1|SINE|Alu	-10402	NM_001281723	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
119613	chr19	40767401	40767750	+	0	NA	Intergenic	Intergenic	-7585	NM_001202553	8190		NM_006533	ENSG00000261857	MIA	CD-RAP|MIA1	MIA SH3 domain containing	protein-coding
38668	chr11	46391171	46391850	+	0	NA	intron (NM_001366692, intron 1 of 1)	CpG	158	NM_001366692	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
7633	chr1	35563771	35563930	+	0	NA	exon (NM_001014839, exon 7 of 8)	exon (NM_001014839, exon 7 of 8)	6051	NM_014284	23154		NM_014284	ENSG00000020129	NCDN	NEDIES	neurochondrin	protein-coding
150260	chr21	41762901	41763100	+	0	NA	intron (NM_020639, intron 1 of 7)	intron (NM_020639, intron 1 of 7)	4052	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
47929	chr12	6791701	6792230	+	0	NA	intron (NM_001382705, intron 1 of 7)	intron (NM_001382705, intron 1 of 7)	2437	NM_001195014	920		NM_000616	ENSG00000010610	CD4	CD4mut|IMD79|Leu-3|OKT4D|T4	CD4 molecule	protein-coding
117484	chr19	19796321	19796580	+	0	NA	intron (NM_001145404, intron 2 of 2)	AluY|SINE|Alu	19876	NM_001355194	7608		NM_001355194	ENSG00000291177	ZNF56P	ZNF56|ZNF742	zinc finger protein 56, pseudogene	pseudo
100464	chr17	61407651	61408250	+	0	NA	intron (NM_005994, intron 6 of 6)	intron (NM_005994, intron 6 of 6)	-3801	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
204372	chr7	2971851	2972150	+	0	NA	intron (NM_032415, intron 1 of 24)	intron (NM_032415, intron 1 of 24)	71867	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
59496	chr13	26707571	26707980	+	0	NA	Intergenic	Intergenic	53011	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
179915	chr5	695671	695830	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2398	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
235734	chrX	48925101	48925480	+	0	NA	intron (NM_001136157, intron 6 of 8)	AluY|SINE|Alu	-6266	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
180030	chr5	1051071	1051430	+	0	NA	3' UTR (NM_006598, exon 24 of 24).2	3' UTR (NM_006598, exon 24 of 24).2	11724	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
39554	chr11	61122421	61123150	+	0	NA	intron (NM_001346456, intron 6 of 10)	intron (NM_001346456, intron 6 of 10)	20296	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
64902	chr14	35398151	35398250	+	0	NA	Intergenic	Intergenic	6549	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
209552	chr7	77326201	77326600	+	0	NA	intron (NR_146938, intron 21 of 29)	intron (NR_146938, intron 21 of 29)	-88798	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
211096	chr7	102498871	102499450	+	0	NA	intron (NM_001367767, intron 8 of 20)	AluSz6|SINE|Alu	18617	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
109261	chr19	530851	532200	+	0	NA	promoter-TSS (NM_004359)	promoter-TSS (NM_004359)	-235	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
136081	chr2	173210521	173210880	+	0	NA	intron (NR_033882, intron 5 of 7)	intron (NR_033882, intron 5 of 7)	71336	NR_033882	339751		NR_033882	ENSG00000238133	MAP3K20-AS1	MLK7-AS1	MAP3K20 antisense RNA 1	ncRNA
42391	chr11	68903601	68905250	+	0	NA	promoter-TSS (NM_181515)	promoter-TSS (NM_181515)	534	NM_002180	3508		NM_002180	ENSG00000132740	IGHMBP2	CATF1|CMT2S|HCSA|HMN6|HMNR1|SMARD1|SMUBP2|ZFAND7	immunoglobulin mu DNA binding protein 2	protein-coding
64371	chr14	24132251	24133230	+	0	NA	exon (NM_203402, exon 2 of 2)	exon (NM_203402, exon 2 of 2)	1274	NM_203402	161247		NM_203402	ENSG00000139914	FITM1	FIT1	fat storage inducing transmembrane protein 1	protein-coding
61346	chr13	50895151	50895250	+	0	NA	intron (NR_046552, intron 1 of 2)	intron (NR_046552, intron 1 of 2)	-14478	NM_001142279	79621		NM_024570	ENSG00000136104	RNASEH2B	AGS2|DLEU8	ribonuclease H2 subunit B	protein-coding
123295	chr19	53557521	53560450	+	0	NA	intron (NM_001317116, intron 2 of 4)	(AC)n|Simple_repeat|Simple_repeat	3678	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
90314	chr17	1110871	1111030	+	0	NA	intron (NM_001322840, intron 2 of 22).2	intron (NM_001322840, intron 2 of 22).2	-1848	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
181852	chr5	53109271	53110200	+	0	NA	promoter-TSS (NM_004531)	promoter-TSS (NM_004531)	22	NM_004531	4338		NM_004531	ENSG00000164172	MOCS2	MCBPE|MOCO1|MOCODB|MPTS	molybdenum cofactor synthesis 2	protein-coding
38377	chr11	44680901	44681630	+	0	NA	Intergenic	Intergenic	-45697	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
68015	chr14	75128401	75128600	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1452	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
25474	chr10	6923501	6923700	+	0	NA	Intergenic	AluSc|SINE|Alu	144002	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
113024	chr19	7929301	7930300	+	0	NA	intron (NM_006351, intron 10 of 12)	intron (NM_006351, intron 10 of 12)	-3665	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
120482	chr19	44749951	44750330	+	0	NA	intron (NM_005178, intron 1 of 8)	intron (NM_005178, intron 1 of 8)	1432	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
235633	chrX	48469151	48470200	+	0	NA	intron (NM_033518, intron 1 of 16)	intron (NM_033518, intron 1 of 16)	585	NM_033518	92745		NM_033518	ENSG00000017483	SLC38A5	JM24|SN2|SNAT5|pp7194	solute carrier family 38 member 5	protein-coding
39042	chr11	47850271	47850900	+	0	NA	Intergenic	L2|LINE|L2	-2041	NM_015231	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
83200	chr16	23513771	23513930	+	0	NA	Intergenic	MER39|LTR|ERV1	-3356	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
226559	chr9	72364901	72366200	+	0	NA	promoter-TSS (NM_006007)	promoter-TSS (NM_006007)	-342	NM_001102420	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
44112	chr11	96018551	96018950	+	0	NA	intron (NM_032427, intron 2 of 4)	AluSx1|SINE|Alu	-94643	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
116667	chr19	18390471	18390830	+	0	NA	TTS (NM_145256)	TTS (NM_145256)	4088	NR_036156	100422943		NR_036156	ENSG00000264175	MIR3189	mir-3189	microRNA 3189	ncRNA
149464	chr21	31712521	31712600	+	0	NA	intron (NM_001145444, intron 1 of 18)	AluSq10|SINE|Alu	19558	NM_001145445	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
191141	chr6	4138051	4138530	+	0	NA	intron (NR_103764, intron 2 of 3)	intron (NR_103764, intron 2 of 3)	2218	NR_103764	100507506		NR_103764	ENSG00000234817	ECI2-DT	-	ECI2 divergent transcript	ncRNA
119714	chr19	41174701	41175100	+	0	NA	Intergenic	Intergenic	-18319	NM_030622	29785		NM_030622	ENSG00000167600	CYP2S1	CYPIIS1	cytochrome P450 family 2 subfamily S member 1	protein-coding
6984	chr1	31807101	31807500	+	0	NA	intron (NM_001281988, intron 1 of 14)	AluSz6|SINE|Alu	8751	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
159794	chr3	16324371	16325100	+	0	NA	TTS (NM_001352977)	TTS (NM_001352977)	59523	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
177825	chr4	123659851	123660030	+	0	NA	intron (NR_027105, intron 2 of 5)	intron (NR_027105, intron 2 of 5)	9949	NR_027105	285419		NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
201894	chr6	151028451	151028750	+	0	NA	intron (NM_015440, intron 24 of 27)	L1MB2|LINE|L1	21592	NM_001350490	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
180217	chr5	1518271	1519180	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	5235	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
211068	chr7	102472471	102473030	+	0	NA	TTS (NR_163857)	TTS (NR_163857)	1281	NR_039677	100616367		NR_039677	ENSG00000284596	MIR4467	-	microRNA 4467	ncRNA
28232	chr10	45425851	45426200	+	0	NA	intron (NM_001256153, intron 6 of 13).2	intron (NM_001256153, intron 6 of 13).2	27096	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
225028	chr9	33146201	33147000	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-20348	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
138893	chr2	217790251	217790780	+	0	NA	Intergenic	Intergenic	-33922	NR_026597	729582		NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
165441	chr3	98546151	98546650	+	0	NA	Intergenic	Intergenic	14422	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
13735	chr1	116812051	116812650	+	0	NA	Intergenic	L1M7|LINE|L1	57920	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
144137	chr20	34019771	34019930	+	0	NA	intron (NM_016732, intron 1 of 9)	AluYa5|SINE|Alu	-25483	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
105186	chr17	82292051	82294730	+	0	NA	promoter-TSS (NR_135639)	promoter-TSS (NR_135639)	-576	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
86912	chr16	68073451	68073880	+	0	NA	intron (NM_001271763, intron 10 of 14)	AluSq2|SINE|Alu	-11705	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
113942	chr19	10751801	10752000	+	0	NA	intron (NM_001005362, intron 1 of 19)	LTR10D|LTR|ERV1	-28354	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
2994	chr1	12022871	12023230	+	0	NA	intron (NM_021933, intron 4 of 9)	intron (NM_021933, intron 4 of 9)	3552	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
30883	chr10	86958501	86959130	+	0	NA	exon (NM_001330120, exon 3 of 7)	exon (NM_001330120, exon 3 of 7)	216	NM_003087	6623		NM_003087	ENSG00000173267	SNCG	BCSG1|SR	synuclein gamma	protein-coding
205680	chr7	23105251	23106700	+	0	NA	promoter-TSS (NR_046220)	promoter-TSS (NR_046220)	190	NM_001031710	55975		NM_018846	ENSG00000122550	KLHL7	CISS3|KLHL6|PERCHING|SBBI26	kelch like family member 7	protein-coding
189594	chr5	175656051	175657000	+	0	NA	Intergenic	L2a|LINE|L2	-1546	NR_160284	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
67550	chr14	71254071	71254850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-66016	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
24802	chr10	76271	76800	+	0	NA	Intergenic	CpG	-27239	NM_177987	347688		NM_177987	ENSG00000261456	TUBB8	OOMD|OOMD2|OZEMA2|bA631M21.2	tubulin beta 8 class VIII	protein-coding
31410	chr10	95559471	95559830	+	0	NA	intron (NM_001384456, intron 1 of 27)	intron (NM_001384456, intron 1 of 27)	1721	NM_001384465	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
160521	chr3	30647351	30647450	+	0	NA	intron (NM_001024847, intron 3 of 7)	LTR16|LTR|ERVL	40799	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
103826	chr17	79192601	79192800	+	0	NA	intron (NM_001350453, intron 3 of 13)	intron (NM_001350453, intron 3 of 13)	117876	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
219730	chr8	81041051	81041850	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	70618	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
207390	chr7	44196101	44196600	+	0	NA	Intergenic	MIRb|SINE|MIR	-4628	NM_001363678	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
43336	chr11	76496071	76496380	+	0	NA	exon (NM_001300943, exon 9 of 21)	exon (NM_001300943, exon 9 of 21)	51200	NM_020193	56946		NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY transcriptional repressor, BRCA2 interacting	protein-coding
42856	chr11	73250101	73250630	+	0	NA	Intergenic	AluSz6|SINE|Alu	-14140	NM_001277205	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
72557	chr15	34436701	34438130	+	0	NA	promoter-TSS (NM_001368072)	promoter-TSS (NM_001368072)	51	NM_001368072	23015		NM_015003	ENSG00000175265	GOLGA8A	CFAP286|FAP286|GM88|GOLGA8B	golgin A8 family member A	protein-coding
216533	chr8	21042501	21042700	+	0	NA	Intergenic	Intergenic	68614	NR_033894	286114		NR_033894	ENSG00000253199	LINC02153	-	long intergenic non-protein coding RNA 2153	ncRNA
28454	chr10	49186451	49186750	+	0	NA	intron (NM_001288741, intron 1 of 4)	MIR|SINE|MIR	1791	NM_001353331	170371		NM_001010863	ENSG00000204161	TMEM273	C10orf128	transmembrane protein 273	protein-coding
35357	chr11	1242771	1243130	+	0	NA	exon (NM_002458, exon 31 of 49)	exon (NM_002458, exon 31 of 49)	6726	NR_157183	112577518		NR_157183	ENSG00000255177	MUC5B-AS1	-	MUC5B antisense RNA 1	ncRNA
141306	chr2	240441901	240442100	+	0	NA	intron (NM_002081, intron 1 of 8)	intron (NM_002081, intron 1 of 8)	6337	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
135567	chr2	165777571	165778200	+	0	NA	intron (NM_004482, intron 1 of 10)	MamRTE1|LINE|RTE-BovB	16362	NM_004482	2591		NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HFTC1|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
177547	chr4	119096501	119097050	+	0	NA	Intergenic	Intergenic	-39057	NM_016599	51778		NM_016599	ENSG00000172399	MYOZ2	C4orf5|CMH16|CS-1|FATZ-2	myozenin 2	protein-coding
104973	chr17	81979821	81980280	+	0	NA	intron (NM_001251888, intron 2 of 16)	AluSq2|SINE|Alu	2421	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
205569	chr7	21261771	21262230	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-166083	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
71220	chr14	105162421	105162980	+	0	NA	intron (NM_002226, intron 2 of 25)	intron (NM_002226, intron 2 of 25)	6076	NM_002226	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
186946	chr5	139650271	139651150	+	0	NA	promoter-TSS (NM_001317205)	promoter-TSS (NM_001317205)	-279	NM_001317205	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
186690	chr5	138663951	138664380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-88764	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
213049	chr7	131055021	131055280	+	0	NA	intron (NR_109852, intron 2 of 5)	AluJr|SINE|Alu	51880	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
81438	chr16	8864871	8865130	+	0	NA	intron (NM_001278260, intron 1 of 4)	intron (NM_001278260, intron 1 of 4)	2428	NM_001278264	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
98236	chr17	46160951	46161050	+	0	NA	intron (NM_015443, intron 2 of 14).2	MIR|SINE|MIR	31782	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
78139	chr15	90395621	90396000	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	7568	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
172592	chr4	2480571	2481130	+	0	NA	intron (NM_001185009, intron 2 of 8)	intron (NM_001185009, intron 2 of 8)	11397	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
122670	chr19	49874701	49874900	+	0	NA	intron (NM_001278160, intron 1 of 4)	L3|LINE|CR1	1449	NM_001278159	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
30721	chr10	81876901	81877100	+	0	NA	promoter-TSS (NM_001165973)	promoter-TSS (NM_001165973)	-687	NM_001165973	10718		NM_001010848	ENSG00000185737	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding
222176	chr8	132980621	132981630	+	0	NA	intron (NM_003235, intron 34 of 47)	intron (NM_003235, intron 34 of 47)	65456	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
58362	chr12	131663671	131663830	+	0	NA	Intergenic	Intergenic	-15629	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
213192	chr7	132490551	132491180	+	0	NA	intron (NM_181775, intron 3 of 4)	intron (NM_181775, intron 3 of 4)	85605	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
6252	chr1	27560271	27560730	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	42994	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
190455	chr5	180006821	180007480	+	0	NA	intron (NM_001280801, intron 3 of 7)	AluSx|SINE|Alu	8247	NR_029885	442908		NR_029885	ENSG00000198995	MIR340	MIRN340|hsa-mir-340|mir-340	microRNA 340	ncRNA
135710	chr2	168977651	168978530	+	0	NA	intron (NM_003742, intron 11 of 27)	MIRc|SINE|MIR	53234	NM_003742	8647		NM_003742	ENSG00000073734	ABCB11	ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP	ATP binding cassette subfamily B member 11	protein-coding
231595	chr9	131546551	131547350	+	0	NA	intron (NM_001365666, intron 1 of 3)	intron (NM_001365666, intron 1 of 3)	1427	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
26873	chr10	25080851	25081350	+	0	NA	Intergenic	Intergenic	-18821	NM_001270383	219670		NM_145010	ENSG00000151023	ENKUR	C10orf63|CFAP106	enkurin, TRPC channel interacting protein	protein-coding
94806	chr17	31306871	31307400	+	0	NA	intron (NM_006495, intron 1 of 1)	AluSx|SINE|Alu	6919	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
82193	chr16	14971271	14971630	+	0	NA	Intergenic	AluSx|SINE|Alu	-3285	NM_001285447	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
37785	chr11	32431021	32431480	+	0	NA	promoter-TSS (NM_001198551)	promoter-TSS (NM_001198551)	-433	NM_001198551	7490		NM_000378	ENSG00000184937	WT1	AWT1|GUD|NPHS4|WAGR|WIT-2|WT-1|WT33	WT1 transcription factor	protein-coding
8567	chr1	41363271	41364180	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	2291	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
70170	chr14	100323021	100323680	+	0	NA	promoter-TSS (NM_207117)	promoter-TSS (NM_207117)	11	NM_001350877	283600		NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDCMP|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
48297	chr12	8970001	8970200	+	0	NA	intron (NR_137427, intron 1 of 2)	AluJb|SINE|Alu	-19446	NM_005810	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
175739	chr4	77711501	77712230	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	106045	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
92372	chr17	8220401	8221700	+	0	NA	non-coding (NR_026951, exon 3 of 3)	non-coding (NR_026951, exon 3 of 3)	2993	NR_026951	284029		NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324|RNA00324|TP53LC03	long intergenic non-protein coding RNA 324	ncRNA
210620	chr7	100442571	100442730	+	0	NA	Intergenic	AluSz|SINE|Alu	-6153	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
170467	chr3	185925971	185926730	+	0	NA	intron (NM_001243879, intron 1 of 7)	MIRb|SINE|MIR	11664	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
32271	chr10	102070471	102071300	+	0	NA	Intergenic	AluY|SINE|Alu	5536	NM_024747	79803		NM_024747	ENSG00000166189	HPS6	BLOC2S3	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding
46353	chr11	125886871	125888550	+	0	NA	promoter-TSS (NM_001134793)	promoter-TSS (NM_001134793)	42	NM_001377270	219844		NM_145014	ENSG00000198331	HYLS1	HLS	HYLS1 centriolar and ciliogenesis associated	protein-coding
110126	chr19	1590401	1591150	+	0	NA	intron (NM_001281454, intron 1 of 6)	intron (NM_001281454, intron 1 of 6)	2090	NM_001281454	53615		NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
92901	chr17	16450071	16450230	+	0	NA	intron (NM_001113567, intron 2 of 3)	MIR|SINE|MIR	8924	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
227068	chr9	84294571	84294730	+	0	NA	intron (NM_001199633, intron 8 of 17)	intron (NM_001199633, intron 8 of 17)	46108	NR_037638	64078		NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
65646	chr14	52322401	52323300	+	0	NA	intron (NM_000956, intron 1 of 1)	MER11A|LTR|ERVK	8538	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
40051	chr11	62718771	62718930	+	0	NA	intron (NM_001079559, intron 10 of 13)	AluSg7|SINE|Alu	8534	NR_037946	100534595		NR_037946	ENSG00000234857	HNRNPUL2-BSCL2	-	HNRNPUL2-BSCL2 readthrough (NMD candidate)	ncRNA
64679	chr14	32200721	32202500	+	0	NA	promoter-TSS (NR_004394).3	promoter-TSS (NR_004394).3	-435	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
42699	chr11	72665351	72665650	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	3564	NM_001146209	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
195214	chr6	36129021	36129280	+	0	NA	Intergenic	AluSx|SINE|Alu	-1363	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
165337	chr3	88075171	88075330	+	0	NA	intron (NM_001366096, intron 1 of 6)	intron (NM_001366096, intron 1 of 6)	15995	NM_001366097	55279		NM_018293	ENSG00000175105	ZNF654	-	zinc finger protein 654	protein-coding
126215	chr2	26848721	26850350	+	0	NA	intron (NM_001253724, intron 1 of 12)	CpG	1111	NM_001253724	56896		NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|CV2|RTSC4|Ulip6	dihydropyrimidinase like 5	protein-coding
13103	chr1	111622271	111622680	+	0	NA	intron (NM_001291896, intron 1 of 7)	L2a|LINE|L2	-2077	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
56315	chr12	112664671	112664830	+	0	NA	intron (NM_001347952, intron 1 of 21)	LTR16E1|LTR|ERVL	30426	NR_031631	100302227		NR_031631	ENSG00000283507	MIR1302-1	MIRN1302-1|hsa-mir-1302-1	microRNA 1302-1	ncRNA
158748	chr3	9302301	9302900	+	0	NA	Intergenic	Intergenic	52844	NR_146969	101927440		NR_146969	ENSG00000235830	SRGAP3-AS4	-	SRGAP3 antisense RNA 4	ncRNA
207529	chr7	44814421	44814930	+	0	NA	Intergenic	Intergenic	17994	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
137527	chr2	197204971	197206630	+	0	NA	intron (NM_153697, intron 1 of 9)	L2c|LINE|L2	7809	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
156024	chr22	39953821	39954100	+	0	NA	intron (NM_001291826, intron 2 of 6)	intron (NM_001291826, intron 2 of 6)	7143	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
63040	chr13	112980471	112980830	+	0	NA	intron (NM_001320816, intron 1 of 29)	(CCTTCC)n|Simple_repeat|Simple_repeat	1284	NM_001320816	23263		NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
151856	chr22	18578901	18579550	+	0	NA	Intergenic	L1M5|LINE|L1	-30397	NR_003563	728233		NR_003563	ENSG00000290425	PI4KAP1	-	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudo
60194	chr13	40383401	40384100	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	97256	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
153667	chr22	28882771	28884950	+	0	NA	exon (NM_001206998, exon 1 of 9)	exon (NM_001206998, exon 1 of 9)	288	NM_001206998	84133		NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
33567	chr10	119416701	119417300	+	0	NA	intron (NM_005308, intron 4 of 15)	intron (NM_005308, intron 4 of 15)	39028	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
80242	chr16	2203221	2203480	+	0	NA	Intergenic	Intergenic	-2104	NM_001199173	64223		NM_022372	ENSG00000167965	MLST8	GBL|GbetaL|LST8|POP3|WAT1	MTOR associated protein, LST8 homolog	protein-coding
185071	chr5	116313501	116313700	+	0	NA	Intergenic	L1MA2|LINE|L1	57857	NR_162144	113219464		NR_162144		MIR12130	-	microRNA 12130	ncRNA
200892	chr6	139027401	139028000	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-1045	NM_021243	58527		NM_021243	ENSG00000146386	ABRACL	C6orf115|Costars|HSPC280|PRO2013	ABRA C-terminal like	protein-coding
88990	chr16	87945251	87946180	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-3523	NM_001384918	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
79456	chr16	726301	727500	+	0	NA	promoter-TSS (NM_001378031)	promoter-TSS (NM_001378031)	-20	NR_165384	124093		NM_173476	ENSG00000162004	CCDC78	C16orf25|CNM4|JFP10|hsCCDC78	coiled-coil domain containing 78	protein-coding
22376	chr1	218284501	218285680	+	0	NA	promoter-TSS (NM_016052)	promoter-TSS (NM_016052)	-203	NM_016052	51018		NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
76478	chr15	74869621	74870280	+	0	NA	intron (NM_001320778, intron 1 of 9)	intron (NM_001320778, intron 1 of 9)	3415	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
228430	chr9	99820801	99823170	+	0	NA	promoter-TSS (NM_006981)	promoter-TSS (NM_006981)	100	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
44951	chr11	116789451	116789950	+	0	NA	3' UTR (NM_001371904, exon 3 of 3)	3' UTR (NM_001371904, exon 3 of 3)	-1677	NM_001317086	8882		NM_003904	ENSG00000109917	ZPR1	GKAF|ZNF259	ZPR1 zinc finger	protein-coding
172796	chr4	2954171	2955730	+	0	NA	intron (NM_001291978, intron 3 of 17)	intron (NM_001291978, intron 3 of 17)	8456	NM_001291978	8602		NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
27380	chr10	30998101	30999180	+	0	NA	intron (NM_001143768, intron 1 of 6)	intron (NM_001143768, intron 1 of 6)	877	NM_001143769	220929		NM_182755	ENSG00000183621	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
166185	chr3	111693971	111694130	+	0	NA	intron (NM_153268, intron 1 of 3)	intron (NM_153268, intron 1 of 3)	-16617	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
188989	chr5	166784151	166784250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	142170	NR_108020	102557615		NR_108020	ENSG00000254130	LINC01947	CTB-7E3.1	long intergenic non-protein coding RNA 1947	ncRNA
157473	chr22	45294271	45294430	+	0	NA	intron (NM_001167574, intron 3 of 3)	intron (NM_001167574, intron 3 of 3)	9401	NM_001167574	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
93397	chr17	18321271	18321800	+	0	NA	intron (NM_144775, intron 1 of 1)	MIR|SINE|MIR	6242	NM_144775	140775		NM_144775	ENSG00000176994	SMCR8	DENND8A	SMCR8-C9orf72 complex subunit	protein-coding
81793	chr16	11535071	11535330	+	0	NA	Intergenic	Intergenic	-7953	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
88965	chr16	87858351	87858450	+	0	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	4504	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
77088	chr15	78913301	78913500	+	0	NA	Intergenic	Intergenic	31646	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
181919	chr5	54794651	54794950	+	0	NA	Intergenic	L1MD3|LINE|L1	-50542	NR_104658	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
134392	chr2	136389871	136390200	+	0	NA	Intergenic	Intergenic	-271886	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
12290	chr1	100720721	100720980	+	0	NA	intron (NM_080682, intron 2 of 7)	intron (NM_080682, intron 2 of 7)	1108	NM_001078	7412		NM_001078	ENSG00000162692	VCAM1	CD106|INCAM-100	vascular cell adhesion molecule 1	protein-coding
134143	chr2	134189471	134189630	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	62425	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
226385	chr9	70391951	70392500	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	22432	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
183610	chr5	80213551	80214100	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	42223	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
107544	chr18	48711871	48712150	+	0	NA	intron (NM_014772, intron 7 of 11)	intron (NM_014772, intron 7 of 11)	41410	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
122808	chr19	50378501	50379100	+	0	NA	intron (NM_001256647, intron 5 of 8)	intron (NM_001256647, intron 5 of 8)	2343	NM_007121	7376		NM_007121	ENSG00000131408	NR1H2	LXR-b|LXRB|NER|NER-I|RIP15|UNR	nuclear receptor subfamily 1 group H member 2	protein-coding
86858	chr16	67938221	67938750	+	0	NA	Intergenic	AluSp|SINE|Alu	-1635	NM_002801	5699		NM_002801	ENSG00000205220	PSMB10	LMP10|MECL1|PRAAS5|beta2i	proteasome 20S subunit beta 10	protein-coding
196953	chr6	52672421	52673000	+	0	NA	intron (NM_014051, intron 1 of 4)	L2b|LINE|L2	1597	NM_014051	28978		NM_014051	ENSG00000096092	TMEM14A	C6orf73|PTD011	transmembrane protein 14A	protein-coding
128414	chr2	55237751	55238350	+	0	NA	intron (NM_001321002, intron 14 of 15)	intron (NM_001321002, intron 14 of 15)	3886	NR_039624	100616345		NR_039624	ENSG00000283795	MIR4426	-	microRNA 4426	ncRNA
163258	chr3	50290671	50290830	+	0	NA	intron (NM_006764, intron 1 of 11)	intron (NM_006764, intron 1 of 11)	1679	NM_006764	7866		NM_006764	ENSG00000214706	IFRD2	IFNRP|SKMc15|SM15	interferon related developmental regulator 2	protein-coding
96680	chr17	41123451	41123750	+	0	NA	exon (NM_031854, exon 1 of 1)	exon (NM_031854, exon 1 of 1)	582	NM_031854	83755		NM_031854	ENSG00000213416	KRTAP4-12	KAP4.12|KRTAP4.12	keratin associated protein 4-12	protein-coding
164738	chr3	69016371	69016930	+	0	NA	Intergenic	L1MC5|LINE|L1	-2966	NM_001278689	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
169509	chr3	169972121	169972680	+	0	NA	intron (NM_003262, intron 1 of 7)	intron (NM_003262, intron 1 of 7)	5593	NM_003262	7095		NM_003262	ENSG00000008952	SEC62	Dtrp1|HTP1|TLOC1|TP-1	SEC62 homolog, preprotein translocation factor	protein-coding
175601	chr4	75723451	75725480	+	0	NA	promoter-TSS (NM_001290049)	promoter-TSS (NM_001290049)	-57	NM_001290049	8615		NM_003715	ENSG00000138768	USO1	P115|TAP|VDP	USO1 vesicle transport factor	protein-coding
1318	chr1	2407751	2408180	+	0	NA	intron (NM_153818, intron 3 of 5)	L2|LINE|L2	4599	NM_002617	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
89876	chr16	89645101	89645300	+	0	NA	non-coding (NR_046418, exon 7 of 7)	non-coding (NR_046418, exon 7 of 7)	12508	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
180854	chr5	32594571	32594730	+	0	NA	intron (NM_006713, intron 3 of 4)	MER1B|DNA|hAT-Charlie	9093	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
172768	chr4	2922551	2923830	+	0	NA	intron (NM_176801, intron 13 of 15)	L1PA7|LINE|L1	11047	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
61508	chr13	52847001	52847200	+	0	NA	exon (NM_032949, exon 1 of 3)	exon (NM_032949, exon 1 of 3)	1540	NM_002590	5100		NM_002590	ENSG00000136099	PCDH8	ARCADLIN|PAPC	protocadherin 8	protein-coding
66062	chr14	58394771	58394930	+	0	NA	Intergenic	AluSg|SINE|Alu	-1080	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
121484	chr19	47126601	47126800	+	0	NA	Intergenic	AluYk3|SINE|Alu	-4135	NM_001145713	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
12265	chr1	100459171	100459880	+	0	NA	intron (NM_001319210, intron 8 of 16)	intron (NM_001319210, intron 8 of 16)	-78614	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
216112	chr8	11279371	11280000	+	0	NA	Intergenic	Intergenic	-5131	NM_015458	66036		NM_015458	ENSG00000104643	MTMR9	C8orf9|LIP-STYX|MTMR8	myotubularin related protein 9	protein-coding
101575	chr17	68050771	68051530	+	0	NA	Intergenic	AluSx3|SINE|Alu	15190	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
142983	chr20	20083951	20084330	+	0	NA	intron (NM_001167816, intron 5 of 12)	intron (NM_001167816, intron 5 of 12)	27494	NM_001167816	26074		NM_015585	ENSG00000089101	CFAP61	C20orf26|CaM-IP3|SPGF84|dJ1002M8.3|dJ1178H5.4	cilia and flagella associated protein 61	protein-coding
99913	chr17	56925651	56925750	+	0	NA	Intergenic	AluY|SINE|Alu	-11651	NM_005082	7706		NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
86151	chr16	57750951	57751050	+	0	NA	intron (NM_005886, intron 5 of 19)	intron (NM_005886, intron 5 of 19)	15230	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
196603	chr6	44237221	44238630	+	0	NA	Intergenic	Intergenic	-8241	NM_001271970	3326		NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
79305	chr16	552571	553350	+	0	NA	exon (NM_005632, exon 13 of 14)	exon (NM_005632, exon 13 of 14)	-7434	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
170838	chr3	190322151	190322850	+	0	NA	promoter-TSS (NM_021101)	promoter-TSS (NM_021101)	-54	NM_021101	9076		NM_021101	ENSG00000163347	CLDN1	CLD1|ILVASC|SEMP1	claudin 1	protein-coding
17093	chr1	156139471	156140700	+	0	NA	TTS (NM_001257374)	TTS (NM_001257374)	-9859	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
142212	chr20	3048301	3048500	+	0	NA	TTS (NM_030811)	TTS (NM_030811)	2348	NM_030811	64949		NM_030811	ENSG00000125901	MRPS26	C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3|mS26	mitochondrial ribosomal protein S26	protein-coding
8137	chr1	39278371	39278530	+	0	NA	intron (NM_012090, intron 5 of 92)	intron (NM_012090, intron 5 of 92)	-130623	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
46634	chr11	128680871	128681230	+	0	NA	TTS (NR_135072)	TTS (NR_135072)	-5485	NM_001271012	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
175951	chr4	80840401	80840800	+	0	NA	intron (NM_001206997, intron 4 of 6)	intron (NM_001206997, intron 4 of 6)	-190108	NM_001201	651		NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
53572	chr12	67658251	67658750	+	0	NA	exon (NM_003583, exon 2 of 2)	exon (NM_003583, exon 2 of 2)	9755	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
3686	chr1	16510621	16511230	+	0	NA	Intergenic	AluJo|SINE|Alu	3360	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
225137	chr9	33638601	33638800	+	0	NA	Intergenic	Intergenic	14475	NR_003573	304		NR_003573		ANXA2P2	ANX2L2|ANX2P2|LPC2B	annexin A2 pseudogene 2	pseudo
208873	chr7	73740321	73741950	+	0	NA	Intergenic	Intergenic	-2268	NM_001145364	83451		NM_148912	ENSG00000106077	ABHD11	PP1226|WBSCR21	abhydrolase domain containing 11	protein-coding
194406	chr6	33018851	33019730	+	0	NA	Intergenic	Intergenic	-9699	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
209756	chr7	87208751	87209050	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	10832	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
188548	chr5	156913501	156914300	+	0	NA	Intergenic	Intergenic	49326	NM_001146726	91937		NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T cell immunoglobulin and mucin domain containing 4	protein-coding
131874	chr2	98716951	98717450	+	0	NA	intron (NM_012214, intron 2 of 15)	AluSx1|SINE|Alu	13932	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
156942	chr22	42324921	42325750	+	0	NA	Intergenic	Intergenic	-41408	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
41030	chr11	65444201	65445650	+	0	NA	TTS (NR_030343)	TTS (NR_030343)	467	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
227096	chr9	85727851	85728150	+	0	NA	intron (NM_001330701, intron 1 of 25)	AluJr|SINE|Alu	13954	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
52597	chr12	56204551	56204850	+	0	NA	non-coding (NR_040053, exon 9 of 9)	non-coding (NR_040053, exon 9 of 9)	-15217	NM_139067	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
144028	chr20	33492621	33493130	+	0	NA	intron (NM_001032999, intron 1 of 10)	AluSz|SINE|Alu	2779	NM_001032999	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
236440	chrX	71537821	71538380	+	0	NA	intron (NM_181672, intron 3 of 21)	intron (NM_181672, intron 3 of 21)	4996	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
137370	chr2	196174101	196174930	+	0	NA	Intergenic	Intergenic	-2937	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
137845	chr2	200712901	200713980	+	0	NA	non-coding (NR_037886, exon 3 of 3)	non-coding (NR_037886, exon 3 of 3)	17717	NR_135012	107161151		NR_135011		AOX3P-AOX2P	AOX3/AOX3L1	AOX3P-AOX2P readthrough, transcribed pseudogene	pseudo
175865	chr4	79967201	79967450	+	0	NA	intron (NM_001286781, intron 16 of 16)	L1HS|LINE|L1	105904	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
148446	chr20	63982521	63983050	+	0	NA	intron (NM_012469, intron 1 of 20)	L2|LINE|L2	1653	NM_012469	24148		NM_012469	ENSG00000101161	PRPF6	ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6	pre-mRNA processing factor 6	protein-coding
3713	chr1	16610971	16611350	+	0	NA	intron (NM_017940, intron 1 of 28)	L1ME2z|LINE|L1	2404	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
54887	chr12	95851471	95852280	+	0	NA	intron (NR_135014, intron 1 of 2)	L1MC4|LINE|L1	6964	NR_135015	105369921		NR_135014	ENSG00000258343	SNRPF-DT	-	SNRPF divergent transcript	ncRNA
101462	chr17	67461621	67462530	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-9414	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
196704	chr6	44930421	44931150	+	0	NA	intron (NM_001350324, intron 10 of 11)	intron (NM_001350324, intron 10 of 11)	266985	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
31657	chr10	97413671	97414400	+	0	NA	Intergenic	Intergenic	12022	NR_157582	644215		NR_157582		LOC644215	-	uncharacterized LOC644215	ncRNA
73485	chr15	43694921	43695180	+	0	NA	intron (NM_001321927, intron 3 of 9)	intron (NM_001321927, intron 3 of 9)	1110	NM_001321929	548596		NM_001015001	ENSG00000223572	CKMT1A	CKMT1|U-MtCK|mia-CK	creatine kinase, mitochondrial 1A	protein-coding
234993	chrX	39771951	39772900	+	0	NA	Intergenic	Intergenic	-65136	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
125705	chr2	20423821	20424080	+	0	NA	Intergenic	Intergenic	-23124	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
91084	chr17	3386121	3386950	+	0	NA	Intergenic	CpG	11875	NM_003553	8387		NM_003553	ENSG00000180016	OR1E1	HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547	olfactory receptor family 1 subfamily E member 1	protein-coding
47205	chr12	823151	823880	+	0	NA	intron (NM_018979, intron 2 of 27)	L1MB5|LINE|L1	70592	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
102643	chr17	76035921	76036400	+	0	NA	Intergenic	AluSz|SINE|Alu	-8854	NM_001988	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
26363	chr10	15902551	15902880	+	0	NA	Intergenic	Intergenic	-42182	NM_001318330	80013		NM_024948	ENSG00000148481	MINDY3	C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042	MINDY lysine 48 deubiquitinase 3	protein-coding
236054	chrX	56281801	56282050	+	0	NA	intron (NM_007250, intron 5 of 5)	intron (NM_007250, intron 5 of 5)	48767	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
4629	chr1	22114751	22115050	+	0	NA	Intergenic	Intergenic	28197	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
118329	chr19	35557521	35558550	+	0	NA	intron (NM_000704, intron 10 of 21)	CpG-14286	5623	NM_000704	495		NM_000704	ENSG00000105675	ATP4A	ATP6A	ATPase H+/K+ transporting subunit alpha	protein-coding
124696	chr2	3557851	3559550	+	0	NA	promoter-TSS (NR_165465)	promoter-TSS (NR_165465)	313	NR_038431	100506054		NR_038429	ENSG00000234171	RNASEH1-DT	RNASEH1-AS1	RNASEH1 divergent transcript	ncRNA
231826	chr9	132579821	132580350	+	0	NA	Intergenic	CpG	-2521	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
224190	chr9	5434201	5434800	+	0	NA	intron (NM_018465, intron 2 of 5)	SVA_A|Retroposon|SVA	3425	NM_018465	55848		NM_018465	ENSG00000107020	PLGRKT	AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT)	plasminogen receptor with a C-terminal lysine	protein-coding
111244	chr19	3521021	3521280	+	0	NA	intron (NM_016263, intron 1 of 13)	L1MB5|LINE|L1	-1806	NM_001136197	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
20061	chr1	185595801	185596380	+	0	NA	intron (NR_110793, intron 2 of 3)	intron (NR_110793, intron 2 of 3)	32398	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
36438	chr11	4699801	4700230	+	0	NA	Intergenic	Intergenic	-2162	NM_030774	81285		NM_030774	ENSG00000167332	OR51E2	HPRAJ|OR51E3P|OR52A2|PSGR	olfactory receptor family 51 subfamily E member 2	protein-coding
25536	chr10	7389571	7389950	+	0	NA	intron (NM_001029880, intron 1 of 20)	MIR3|SINE|MIR	19581	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
222238	chr8	133137701	133137900	+	0	NA	Intergenic	Intergenic	-35198	NM_001045557	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
93027	chr17	17257371	17257530	+	0	NA	intron (NM_001316355, intron 7 of 10)	intron (NM_001316355, intron 7 of 10)	-20282	NM_144606	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
210402	chr7	99994001	99994650	+	0	NA	Intergenic	Intergenic	-2750	NR_159960	105375423		NR_159959	ENSG00000286923	LOC105375423	-	uncharacterized LOC105375423	ncRNA
58872	chr13	18194851	18195300	+	0	NA	promoter-TSS (NR_027278)	promoter-TSS (NR_027278)	-222	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
45797	chr11	119325071	119325230	+	0	NA	Intergenic	Intergenic	-8020	NM_006500	4162		NM_006500	ENSG00000076706	MCAM	CD146|HEMCAM|METCAM|MUC18|MelCAM	melanoma cell adhesion molecule	protein-coding
116960	chr19	18859751	18860350	+	0	NA	intron (NM_001297549, intron 15 of 23)	intron (NM_001297549, intron 15 of 23)	28091	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
133894	chr2	130155001	130155400	+	0	NA	exon (NM_017751, exon 14 of 19)	exon (NM_017751, exon 14 of 19)	-10088	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
117275	chr19	19471021	19471280	+	0	NA	intron (NM_001384541, intron 2 of 10)	AluSx|SINE|Alu	36087	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
97009	chr17	42295801	42296000	+	0	NA	intron (NM_001288719, intron 4 of 17)	intron (NM_001288719, intron 4 of 17)	7844	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
200725	chr6	137676971	137677600	+	0	NA	Intergenic	L1MC5a|LINE|L1	11639	NR_125867	102723649		NR_125867	ENSG00000230533	LINC03004	-	long intergenic non-protein coding RNA 3004	ncRNA
129561	chr2	69901971	69903300	+	0	NA	intron (NM_006857, intron 4 of 5)	(CTTCTG)n|Simple_repeat|Simple_repeat	8679	NM_006857	11017		NM_006857	ENSG00000124380	SNRNP27	27K|RY1	small nuclear ribonucleoprotein U4/U6.U5 subunit 27	protein-coding
177568	chr4	119370151	119370800	+	0	NA	Intergenic	Intergenic	40185	NR_037596	401149		NR_037596		LINC01061	KIKAT	long intergenic non-protein coding RNA 1061	ncRNA
135548	chr2	162840751	162840850	+	0	NA	Intergenic	Intergenic	-2033	NM_173162	90134		NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	potassium voltage-gated channel subfamily H member 7	protein-coding
85585	chr16	53496371	53497000	+	0	NA	intron (NM_001012398, intron 3 of 9)	AluSz|SINE|Alu	6524	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
37461	chr11	18267451	18268680	+	0	NA	intron (NM_199161, intron 2 of 3)	MER5B|DNA|hAT-Charlie	1801	NM_199161	6288		NM_000331	ENSG00000173432	SAA1	PIG4|SAA|SAA2|TP53I4	serum amyloid A1	protein-coding
86410	chr16	66828651	66829130	+	0	NA	intron (NM_001018159, intron 1 of 20)	AluJb|SINE|Alu	2086	NM_001286500	8883		NM_003905	ENSG00000159593	NAE1	A-116A10.1|APPBP1|HPP1|NEDFIH|ula-1	NEDD8 activating enzyme E1 subunit 1	protein-coding
229252	chr9	116660971	116661240	+	0	NA	intron (NM_014010, intron 15 of 21)	intron (NM_014010, intron 15 of 21)	26110	NM_198186	23245		NM_014010	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding
758	chr1	1504851	1505950	+	0	NA	Intergenic	LTR13|LTR|ERVK	-6762	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
57436	chr12	121893721	121894280	+	0	NA	intron (NM_001261400, intron 1 of 3)	MIRb|SINE|MIR	5210	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
103595	chr17	78714001	78714750	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	2657	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
199315	chr6	112270051	112270430	+	0	NA	intron (NR_121193, intron 2 of 2)	intron (NR_121193, intron 2 of 2)	-15525	NM_001105209	3910		NM_002290	ENSG00000112769	LAMA4	CMD1JJ|LAMA3|LAMA4*-1	laminin subunit alpha 4	protein-coding
29904	chr10	73158001	73158200	+	0	NA	intron (NR_024203, intron 2 of 11)	AluSx|SINE|Alu	9908	NM_007265	11319		NM_007265	ENSG00000122882	ECD	GCR2|HSGT1|SGT1	ecdysoneless cell cycle regulator	protein-coding
24961	chr10	2380751	2380850	+	0	NA	Intergenic	Intergenic	-65726	NR_038884	399708		NR_038884		LINC00701	-	long intergenic non-protein coding RNA 701	ncRNA
167372	chr3	128787901	128788350	+	0	NA	intron (NM_004637, intron 1 of 5)	MER44C|DNA|TcMar-Tigger	-58683	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
102744	chr17	76259921	76260580	+	0	NA	Intergenic	AluJr|SINE|Alu	-5098	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
56233	chr12	111836101	111836450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	5655	NR_152606	51275		NR_015404	ENSG00000234608	MAPKAPK5-AS1	C12orf47|MAAS	MAPKAPK5 antisense RNA 1	ncRNA
95532	chr17	36593301	36593700	+	0	NA	intron (NM_024308, intron 1 of 6)	intron (NM_024308, intron 1 of 6)	1621	NM_024308	79154		NM_024308	ENSG00000278535	DHRS11	ARPG836|SDR24C1|spDHRS11	dehydrogenase/reductase 11	protein-coding
13078	chr1	111512371	111513030	+	0	NA	intron (NM_001081976, intron 1 of 5)	intron (NM_001081976, intron 1 of 5)	-9067	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
136257	chr2	174633601	174633830	+	0	NA	intron (NM_001375832, intron 1 of 8)	intron (NM_001375832, intron 1 of 8)	890	NM_001375837	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
217451	chr8	28626151	28626450	+	0	NA	Intergenic	Intergenic	75164	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
227404	chr9	89534471	89535230	+	0	NA	Intergenic	Intergenic	-36737	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
206259	chr7	29286371	29286530	+	0	NA	intron (NM_001293072, intron 1 of 12)	intron (NM_001293072, intron 1 of 12)	-77480	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
37800	chr11	32792821	32793180	+	0	NA	intron (NM_001008391, intron 1 of 17)	intron (NM_001008391, intron 1 of 17)	1658	NM_001008391	493860		NM_001008391	ENSG00000186714	CCDC73	NY-SAR-79	coiled-coil domain containing 73	protein-coding
14334	chr1	143918721	143919180	+	0	NA	Intergenic	Intergenic	-12973	NM_001372105	440686		NM_001025303	ENSG00000273213	H3-7	H3-2|H3.7|HIST2H3PS2|p06	H3.7 histone (putative)	protein-coding
195800	chr6	41066821	41067300	+	0	NA	3' UTR (NM_001329693, exon 5 of 5)	3' UTR (NM_001329693, exon 5 of 5)	4780	NM_001329688	221443		NM_145063	ENSG00000124596	OARD1	C6orf130|TARG1|dJ34B21.3	O-acyl-ADP-ribose deacylase 1	protein-coding
182473	chr5	62341921	62342930	+	0	NA	intron (NM_001243952, intron 2 of 20)	ERV3-16A3_LTR|LTR|ERVL	36219	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
130428	chr2	85353971	85355850	+	0	NA	promoter-TSS (NM_017750)	promoter-TSS (NM_017750)	141	NR_138132	84173		NM_032213	ENSG00000115459	ELMOD3	DFNA81|DFNB88|LST3|RBED1|RBM29	ELMO domain containing 3	protein-coding
124940	chr2	8583401	8584300	+	0	NA	promoter-TSS (NR_110257)	promoter-TSS (NR_110257)	-58	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
82016	chr16	11927371	11927800	+	0	NA	exon (NM_001355514, exon 9 of 9)	exon (NM_001355514, exon 9 of 9)	-10931	NM_001130007	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
72231	chr15	30398951	30399320	+	0	NA	Intergenic	Intergenic	4613	NR_145478	101927579		NR_145478		DNM1P50	-	dynamin 1 pseudogene 50	pseudo
884	chr1	1647851	1648650	+	0	NA	intron (NM_033486, intron 5 of 19)	intron (NM_033486, intron 5 of 19)	10754	NM_033487	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
98125	chr17	45858051	45858150	+	0	NA	intron (NR_024559, intron 1 of 1)	intron (NR_024559, intron 1 of 1)	13219	NM_175882	162540		NM_175882	ENSG00000185294	SPPL2C	IMP5	signal peptide peptidase like 2C	protein-coding
31912	chr10	100480751	100480850	+	0	NA	intron (NM_003393, intron 3 of 5)	AluJo|SINE|Alu	17791	NM_003393	7479		NM_003393	ENSG00000075290	WNT8B	-	Wnt family member 8B	protein-coding
211047	chr7	102444551	102445200	+	0	NA	intron (NM_001271818, intron 3 of 3)	AluSx1|SINE|Alu	11300	NM_032831	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
126493	chr2	28402201	28402730	+	0	NA	intron (NM_005253, intron 1 of 3)	intron (NM_005253, intron 1 of 3)	-7793	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
194094	chr6	31903551	31903650	+	0	NA	intron (NM_001178063, intron 1 of 13).5	AluSx1|SINE|Alu	-1514	NM_181842	221527		NM_181842	ENSG00000204366	ZBTB12	Bat9|C6orf46|D6S59E|G10|NG35	zinc finger and BTB domain containing 12	protein-coding
235082	chrX	40179371	40179730	+	0	NA	Intergenic	Intergenic	-2221	NM_001123383	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
227172	chr9	87276371	87277530	+	0	NA	Intergenic	Intergenic	128306	NR_161226	401535		NR_161226	ENSG00000204446	LINC02872	C9orf170	long intergenic non-protein coding RNA 2872	ncRNA
2101	chr1	7989951	7990650	+	0	NA	Intergenic	(CATCAC)n|Simple_repeat|Simple_repeat	28589	NM_007262	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
7717	chr1	36096901	36098300	+	0	NA	exon (NM_005202, exon 4 of 4)	exon (NM_005202, exon 4 of 4)	8708	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
186997	chr5	139743251	139743350	+	0	NA	intron (NR_105053, intron 2 of 2)	intron (NR_105053, intron 2 of 2)	2923	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
73296	chr15	41874671	41875550	+	0	NA	intron (NM_016642, intron 22 of 67)	intron (NM_016642, intron 22 of 67)	-8559	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
177596	chr4	120919251	120919550	+	0	NA	intron (NM_001379104, intron 1 of 15)	intron (NM_001379104, intron 1 of 15)	3326	NM_001379106	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
116648	chr19	18322501	18323930	+	0	NA	promoter-TSS (NM_012321)	promoter-TSS (NM_012321)	-139	NM_012321	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
153305	chr22	24184301	24184700	+	0	NA	intron (NM_019601, intron 4 of 14)	intron (NM_019601, intron 4 of 14)	3013	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
64168	chr14	22926501	22926730	+	0	NA	intron (NM_006109, intron 5 of 16)	intron (NM_006109, intron 5 of 16)	2761	NM_001282955	10419		NM_006109	ENSG00000100462	PRMT5	HRMT1L5|HSL7|IBP72|JBP1|SKB1|SKB1Hs	protein arginine methyltransferase 5	protein-coding
148479	chr20	64050651	64051300	+	0	NA	Intergenic	Intergenic	-1336	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
93199	chr17	17815771	17816130	+	0	NA	exon (NM_001005291, exon 13 of 20)	exon (NM_001005291, exon 13 of 20)	-2019	NR_030361	693120		NR_030361	ENSG00000207839	MIR33B	MIRN33B|hsa-mir-33b|mir-33b	microRNA 33b	ncRNA
64400	chr14	24167521	24167980	+	0	NA	Intergenic	Intergenic	-4330	NM_005132	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
122977	chr19	50796571	50797230	+	0	NA	TTS (NM_001290155)	TTS (NM_001290155)	2225	NR_003068	692203		NR_003068	ENSG00000221381	SNORD88B	HBII-180B	small nucleolar RNA, C/D box 88B	snoRNA
70527	chr14	102394621	102395240	+	0	NA	intron (NM_001172631, intron 2 of 16)	intron (NM_001172631, intron 2 of 16)	31989	NM_014844	9895		NM_014844	ENSG00000196663	TECPR2	HSAN9|KIAA0329|SPG49	tectonin beta-propeller repeat containing 2	protein-coding
40826	chr11	64970251	64970350	+	0	NA	intron (NM_001318808, intron 1 of 11)	AluSq2|SINE|Alu	1791	NM_001318808	283129		NM_001037225	ENSG00000168070	MAJIN	C11orf85	membrane anchored junction protein	protein-coding
218344	chr8	42912571	42912730	+	0	NA	intron (NM_032410, intron 2 of 21)	L1MC1|LINE|L1	15672	NM_032410	84376		NM_032410	ENSG00000168172	HOOK3	HK3	hook microtubule tethering protein 3	protein-coding
225269	chr9	34380601	34382850	+	0	NA	promoter-TSS (NM_147169)	promoter-TSS (NM_147169)	-136	NM_147168	84688		NM_032596	ENSG00000164972	SPMIP6	C9orf24|CBE1|NYD-SP22|SMRP1|bA573M23.4	sperm microtubule inner protein 6	protein-coding
38867	chr11	47343351	47343850	+	0	NA	exon (NM_000256, exon 13 of 34)	exon (NM_000256, exon 13 of 34)	9102	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
69804	chr14	99202771	99203380	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	69122	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
64861	chr14	35291471	35293050	+	0	NA	promoter-TSS (NM_001282233)	promoter-TSS (NM_001282233)	-57	NR_104110	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
63611	chr14	20612021	20612610	+	0	NA	Intergenic	L2a|LINE|L2	-21492	NM_001024822	493901		NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
211229	chr7	102640101	102640580	+	0	NA	exon (NM_001114403, exon 3 of 6)	exon (NM_001114403, exon 3 of 6)	2451	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
160958	chr3	36969721	36970380	+	0	NA	Intergenic	Intergenic	23081	NM_014805	9852		NM_014805	ENSG00000178567	EPM2AIP1	-	EPM2A interacting protein 1	protein-coding
164390	chr3	58331121	58331580	+	0	NA	Intergenic	AluJr|SINE|Alu	-1540	NM_001349539	54899		NM_017771	ENSG00000168297	PXK	MONAKA|SLOB	PX domain containing serine/threonine kinase like	protein-coding
97663	chr17	44211601	44212380	+	0	NA	exon (NM_014233, exon 9 of 21)	exon (NM_014233, exon 9 of 21)	-4151	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
179103	chr4	168552071	168552330	+	0	NA	intron (NM_001166108, intron 2 of 21)	intron (NM_001166108, intron 2 of 21)	55148	NM_001166108	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
16085	chr1	153538151	153538850	+	0	NA	intron (NM_002962, intron 3 of 3)	intron (NM_002962, intron 3 of 3)	-2509	NM_014624	6277		NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA|S10A6	S100 calcium binding protein A6	protein-coding
62282	chr13	98842901	98843180	+	0	NA	intron (NM_001318849, intron 38 of 54)	intron (NM_001318849, intron 38 of 54)	10956	NR_046663	100874096		NR_046663	ENSG00000229918	DOCK9-AS1	-	DOCK9 antisense RNA 1	ncRNA
165831	chr3	105837851	105838380	+	0	NA	intron (NM_001321811, intron 3 of 16)	AluJr|SINE|Alu	29476	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
44248	chr11	100681151	100681330	+	0	NA	Intergenic	Intergenic	-6048	NM_001367945	143872		NM_032021	ENSG00000165895	ARHGAP42	AD031|GRAF3|TMEM133	Rho GTPase activating protein 42	protein-coding
138071	chr2	201858501	201859100	+	0	NA	intron (NM_001366386, intron 10 of 13)	intron (NM_001366386, intron 10 of 13)	52221	NM_001261435	65061		NM_139158	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin dependent kinase 15	protein-coding
205987	chr7	26183311	26184300	+	0	NA	intron (NM_004289, intron 3 of 3)	intron (NM_004289, intron 3 of 3)	16941	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
210174	chr7	98470671	98470850	+	0	NA	Intergenic	CpG	-69670	NM_018842	55971		NM_018842	ENSG00000006453	BAIAP2L1	IRTKS	BAR/IMD domain containing adaptor protein 2 like 1	protein-coding
135989	chr2	172196901	172197100	+	0	NA	Intergenic	Intergenic	93994	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
32751	chr10	104318851	104319680	+	0	NA	intron (NM_001272013, intron 1 of 1)	MIRb|SINE|MIR	-4099	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
118023	chr19	34186271	34186730	+	0	NA	intron (NM_001384434, intron 1 of 9).2	MLT2D|LTR|ERVL	13996	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
124668	chr2	3224501	3224700	+	0	NA	intron (NM_001330531, intron 3 of 7)	intron (NM_001330531, intron 3 of 7)	-98574	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
55852	chr12	109115801	109116000	+	0	NA	promoter-TSS (NM_001093)	promoter-TSS (NM_001093)	-687	NM_001093	32		NM_001093	ENSG00000076555	ACACB	ACACbeta|ACC-beta|ACC2|ACCB|ACCbeta|HACC275	acetyl-CoA carboxylase beta	protein-coding
178291	chr4	145102721	145102980	+	0	NA	intron (NM_001040876, intron 1 of 17)	L2a|LINE|L2	-4309	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
165516	chr3	100336501	100337330	+	0	NA	intron (NM_020202, intron 1 of 9)	LTR5_Hs|LTR|ERVK	2158	NM_020202	56954		NM_020202	ENSG00000114021	NIT2	HEL-S-8a	nitrilase family member 2	protein-coding
14653	chr1	145676321	145676580	+	0	NA	intron (NM_001371361, intron 5 of 7)	L3|LINE|CR1	30918	NM_001371361	5174		NM_002614	ENSG00000174827	PDZK1	CAP70|CLAMP|NHERF-3|NHERF3|PDZD1	PDZ domain containing 1	protein-coding
30844	chr10	86515721	86515980	+	0	NA	intron (NM_015045, intron 2 of 18)	intron (NM_015045, intron 2 of 18)	5934	NM_001318328	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
160608	chr3	31392651	31392750	+	0	NA	Intergenic	L2a|LINE|L2	-140225	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
49645	chr12	28268051	28268350	+	0	NA	intron (NM_001330367, intron 3 of 11)	AluSc8|SINE|Alu	-77462	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
17475	chr1	156715301	156715500	+	0	NA	Intergenic	L2|LINE|L2	-9584	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
6055	chr1	27135751	27136480	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	19010	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
119155	chr19	39390441	39392100	+	0	NA	promoter-TSS (NM_001256826)	promoter-TSS (NM_001256826)	-108	NM_017592	55588		NM_017592	ENSG00000063322	MED29	IXL|MED2	mediator complex subunit 29	protein-coding
202729	chr6	158938551	158939330	+	0	NA	Intergenic	Intergenic	50463	NR_160979	100130967		NM_001195032	ENSG00000203711	LINC02901	C6orf99	long intergenic non-protein coding RNA 2901	ncRNA
17323	chr1	156468651	156469430	+	0	NA	intron (NM_001271629, intron 8 of 10)	intron (NM_001271629, intron 8 of 10)	21647	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
65428	chr14	50954771	50955030	+	0	NA	Intergenic	Intergenic	-10417	NM_001163940	5836		NM_002863	ENSG00000100504	PYGL	GSD6	glycogen phosphorylase L	protein-coding
132727	chr2	109206951	109207250	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-65512	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
151420	chr21	46096871	46098300	+	0	NA	promoter-TSS (NM_058175)	promoter-TSS (NM_058175)	-527	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
205502	chr7	17951621	17951880	+	0	NA	Intergenic	AluJr|SINE|Alu	-11242	NM_001350868	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
132671	chr2	108774571	108774730	+	0	NA	intron (NM_006267, intron 23 of 28)	L1MDa|LINE|L1	-12100	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
101224	chr17	65732651	65732950	+	0	NA	intron (NR_126542, intron 2 of 5)	Tigger1|DNA|TcMar-Tigger	93651	NM_001037325	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
238223	chrX	140057051	140057150	+	0	NA	Intergenic	Intergenic	-34567	NM_001271560	389895		NM_001271560	ENSG00000230707	HAPSTR2	-	HUWE1 associated protein modifying stress responses 2	protein-coding
172925	chr4	3508001	3508200	+	0	NA	non-coding (NR_110005, exon 8 of 8)	non-coding (NR_110005, exon 8 of 8)	23556	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
167695	chr3	130727121	130727530	+	0	NA	intron (NM_014602, intron 6 of 19)	AluYk4|SINE|Alu	19504	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
218271	chr8	42257721	42258180	+	0	NA	intron (NR_125823, intron 2 of 2)	MER31-int|LTR|ERV1	13011	NR_125823	101929897		NR_125823	ENSG00000253408	IKBKB-DT	ALAL-1|IKBKBAS	IKBKB divergent transcript	ncRNA
223547	chr8	144151601	144151830	+	0	NA	intron (NM_001288814, intron 1 of 41)	LTR1A2|LTR|ERV1	3070	NM_001288814	727957		NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat like repeat family member 1	protein-coding
238347	chrX	149550221	149551080	+	0	NA	promoter-TSS (NM_001323079)	promoter-TSS (NM_001323079)	-726	NM_001323079	101928917		NM_001323079	ENSG00000283697	HSFX3	-	heat shock transcription factor family, X-linked member 3	protein-coding
108349	chr18	67301551	67302260	+	0	NA	Intergenic	Intergenic	-214641	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
112623	chr19	6766371	6768610	+	0	NA	promoter-TSS (NM_005490)	promoter-TSS (NM_005490)	-55	NM_005490	10045		NM_005490	ENSG00000125731	SH2D3A	NSP1	SH2 domain containing 3A	protein-coding
170194	chr3	183870571	183870930	+	0	NA	intron (NM_001037639, intron 1 of 8)	intron (NM_001037639, intron 1 of 8)	14130	NM_001324437	55486		NM_018622	ENSG00000175193	PARL	PRO2207|PSARL|PSARL1|PSENIP2|RHBDS1	presenilin associated rhomboid like	protein-coding
4303	chr1	20184951	20186650	+	0	NA	promoter-TSS (NM_152376)	promoter-TSS (NM_152376)	-296	NM_152376	127733		NM_152376	ENSG00000162543	UBXN10	UBXD3	UBX domain protein 10	protein-coding
49144	chr12	14942251	14942950	+	0	NA	exon (NM_001321420, exon 7 of 7)	exon (NM_001321420, exon 7 of 7)	-4063	NM_152321	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
210745	chr7	100655071	100655480	+	0	NA	intron (NR_134539, intron 3 of 13)	intron (NR_134539, intron 3 of 13)	1173	NR_134539	51412		NM_016188	ENSG00000077080	ACTL6B	ACTL6|BAF53B|DEE76|EIEE76|IDDSSAD|SMARCN2|arpNalpha	actin like 6B	protein-coding
34014	chr10	124701271	124701430	+	0	NA	intron (NM_014661, intron 2 of 4)	intron (NM_014661, intron 2 of 4)	-2678	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
18928	chr1	168467171	168467880	+	0	NA	intron (NR_125956, intron 4 of 4)	intron (NR_125956, intron 4 of 4)	28119	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
149179	chr21	18252701	18252900	+	0	NA	intron (NM_001204174, intron 1 of 5)	intron (NM_001204174, intron 1 of 5)	6925	NM_001204174	140578		NM_024944	ENSG00000154645	CHODL	C21orf68|MT75|PRED12	chondrolectin	protein-coding
203296	chr6	169986921	169987780	+	0	NA	Intergenic	CpG	24727	NR_027434	100131532		NR_027434		LOC100131532	-	uncharacterized LOC100131532	ncRNA
125711	chr2	20446471	20447600	+	0	NA	promoter-TSS (NM_004040)	promoter-TSS (NM_004040)	-39	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
176016	chr4	82293051	82293950	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	80491	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
231922	chr9	133106671	133108230	+	0	NA	intron (NM_001271775, intron 6 of 17)	intron (NM_001271775, intron 6 of 17)	13790	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
183860	chr5	87128451	87128550	+	0	NA	intron (NR_105018, intron 1 of 3)	intron (NR_105018, intron 1 of 3)	8352	NR_105018	101929380		NR_105018		LOC101929380	-	uncharacterized LOC101929380	ncRNA
27855	chr10	40667221	40667350	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1700760	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
165385	chr3	94044321	94044780	+	0	NA	intron (NM_144996, intron 5 of 7)	SVA_A|Retroposon|SVA	-15953	NM_001001850	415117		NM_001001850	ENSG00000178750	STX19	-	syntaxin 19	protein-coding
141421	chr2	240983251	240983980	+	0	NA	intron (NM_001351305, intron 28 of 31)	CpG	-15003	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
217576	chr8	29490001	29491380	+	0	NA	Intergenic	Intergenic	-140006	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
112724	chr19	7209201	7209400	+	0	NA	intron (NM_001079817, intron 2 of 20)	AluJo|SINE|Alu	85114	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
199807	chr6	127420471	127420850	+	0	NA	Intergenic	Intergenic	38729	NM_014702	9729		NM_014702	ENSG00000189367	KIAA0408	-	KIAA0408	protein-coding
118455	chr19	35870801	35871330	+	0	NA	intron (NM_001024807, intron 3 of 16)	intron (NM_001024807, intron 3 of 16)	2491	NM_001024807	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
111658	chr19	4217951	4218250	+	0	NA	exon (NM_133475, exon 18 of 22)	exon (NM_133475, exon 18 of 22)	-11423	NM_005755	10148		NM_005755	ENSG00000105246	EBI3	IL-27B|IL27B|IL35B	Epstein-Barr virus induced 3	protein-coding
83370	chr16	25225251	25225750	+	0	NA	intron (NM_001169, intron 4 of 5)	AluY|SINE|Alu	8553	NM_001169	343		NM_001169	ENSG00000103375	AQP8	AQP-8	aquaporin 8	protein-coding
155993	chr22	39922651	39923450	+	0	NA	intron (NM_004810, intron 1 of 7)	AluSx3|SINE|Alu	-3554	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
115913	chr19	16609351	16609650	+	0	NA	intron (NM_004831, intron 1 of 2)	MER63C|DNA|hAT-Blackjack	18704	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
221772	chr8	127919051	127919550	+	0	NA	intron (NR_003367, intron 2 of 8)	intron (NR_003367, intron 2 of 8)	29423	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
68831	chr14	91274371	91274600	+	0	NA	intron (NM_001080414, intron 29 of 29)	intron (NM_001080414, intron 29 of 29)	-20605	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
20753	chr1	200983771	200984330	+	0	NA	intron (NM_001252102, intron 27 of 34)	intron (NM_001252102, intron 27 of 34)	39664	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
5718	chr1	26398871	26399500	+	0	NA	Intergenic	Intergenic	-11632	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
39126	chr11	48143751	48143930	+	0	NA	intron (NM_002843, intron 12 of 24)	(TCCCCC)n|Simple_repeat|Simple_repeat	47058	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
34837	chr11	307021	307480	+	0	NA	promoter-TSS (NM_006435)	promoter-TSS (NM_006435)	-857	NM_006435	10581		NM_006435	ENSG00000185201	IFITM2	1-8D|DSPA2c	interferon induced transmembrane protein 2	protein-coding
175615	chr4	76023621	76024080	+	0	NA	promoter-TSS (NM_001565)	promoter-TSS (NM_001565)	-353	NM_001565	3627		NM_001565	ENSG00000169245	CXCL10	C7|IFI10|INP10|IP-10|SCYB10|crg-2|gIP-10|mob-1	C-X-C motif chemokine ligand 10	protein-coding
115282	chr19	14562671	14562830	+	0	NA	intron (NM_138501, intron 2 of 12)	intron (NM_138501, intron 2 of 12)	9316	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
99419	chr17	50089071	50089430	+	0	NA	3' UTR (NM_002204, exon 26 of 26)	3' UTR (NM_002204, exon 26 of 26)	-5487	NM_001199898	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
7771	chr1	36183851	36184400	+	0	NA	Intergenic	AluY|SINE|Alu	27965	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
30914	chr10	87086421	87087480	+	0	NA	intron (NM_001318906, intron 1 of 13)	MER21C|LTR|ERVL	7137	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
201027	chr6	141552551	141552650	+	0	NA	Intergenic	L1MB7|LINE|L1	-580559	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
169798	chr3	176016651	176016750	+	0	NA	Intergenic	L1PA3|LINE|L1	-227851	NR_031687	100302204		NR_031687	ENSG00000221737	MIR548I1	MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1	microRNA 548i-1	ncRNA
131029	chr2	88065151	88065280	+	0	NA	Intergenic	(CCTCC)n|Simple_repeat|Simple_repeat	-2610	NM_198274	150572		NM_198274	ENSG00000115593	SMYD1	BOP|KMT3D|ZMYND18|ZMYND22	SET and MYND domain containing 1	protein-coding
98977	chr17	48728501	48729350	+	0	NA	promoter-TSS (NM_006361)	promoter-TSS (NM_006361)	-175	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
111908	chr19	4688801	4689000	+	0	NA	intron (NR_158699, intron 15 of 22)	CpG-13407	9618	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
230177	chr9	127788101	127789330	+	0	NA	intron (NM_001261, intron 6 of 6)	intron (NM_001261, intron 6 of 6)	2681	NM_001261	1025		NM_001261	ENSG00000136807	CDK9	C-2k|CDC2L4|CTK1|PITALRE|TAK	cyclin dependent kinase 9	protein-coding
32609	chr10	103598951	103599250	+	0	NA	3' UTR (NM_001365079, exon 9 of 9)	3' UTR (NM_001365079, exon 9 of 9)	79115	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
11180	chr1	87330681	87332500	+	0	NA	promoter-TSS (NM_001369491)	promoter-TSS (NM_001369491)	-154	NM_001369491	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
100179	chr17	58654251	58654830	+	0	NA	intron (NM_198393, intron 1 of 32)	AluSx1|SINE|Alu	37505	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
175488	chr4	73224771	73225400	+	0	NA	intron (NM_032217, intron 1 of 33)	Tigger19b|DNA|TcMar-Tigger	-2028	NM_001286771	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
53093	chr12	57748701	57749700	+	0	NA	promoter-TSS (NR_106817)	promoter-TSS (NR_106817)	-518	NR_106817	102466729		NR_106817	ENSG00000283621	MIR6759	hsa-mir-6759	microRNA 6759	ncRNA
64201	chr14	23028601	23029200	+	0	NA	intron (NM_001144932, intron 2 of 3)	intron (NM_001144932, intron 2 of 3)	6000	NM_002797	5693		NM_002797	ENSG00000100804	PSMB5	LMPX|MB1	proteasome 20S subunit beta 5	protein-coding
178403	chr4	147681801	147682430	+	0	NA	intron (NM_001350142, intron 1 of 12)	AluSx4|SINE|Alu	2048	NM_138364	90826		NM_138364	ENSG00000164169	PRMT9	PRMT10	protein arginine methyltransferase 9	protein-coding
69264	chr14	93043471	93044030	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	-6776	NM_001363707	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
38207	chr11	36393901	36394450	+	0	NA	intron (NM_024841, intron 2 of 9)	MIRb|SINE|MIR	-6822	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
68138	chr14	75533351	75534200	+	0	NA	intron (NM_006399, intron 2 of 2)	intron (NM_006399, intron 2 of 2)	11306	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
143163	chr20	24100401	24101000	+	0	NA	Intergenic	Intergenic	-99067	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
17572	chr1	156836021	156836700	+	0	NA	intron (NM_001007792, intron 1 of 16)	intron (NM_001007792, intron 1 of 16)	-19512	NM_001161441	9047		NM_003975	ENSG00000027869	SH2D2A	F2771|SCAP|TSAD|VRAP	SH2 domain containing 2A	protein-coding
166137	chr3	111542951	111543290	+	0	NA	intron (NR_134917, intron 1 of 14)	intron (NR_134917, intron 1 of 14)	923	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
153817	chr22	29726921	29727530	+	0	NA	intron (NM_182527, intron 1 of 4)	intron (NM_182527, intron 1 of 4)	7222	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
37295	chr11	14728301	14728900	+	0	NA	intron (NM_001363569, intron 1 of 15)	MIRb|SINE|MIR	84796	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
18364	chr1	161308271	161309300	+	0	NA	intron (NM_001315491, intron 1 of 5)	intron (NM_001315491, intron 1 of 5)	1183	NM_000530	4359		NM_000530	ENSG00000158887	MPZ	CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0	myelin protein zero	protein-coding
113897	chr19	10685201	10685430	+	0	NA	3' UTR (NM_001137673, exon 18 of 18)	3' UTR (NM_001137673, exon 18 of 18)	-16124	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
126080	chr2	25806521	25806780	+	0	NA	intron (NM_018263, intron 2 of 11)	intron (NM_018263, intron 2 of 11)	-11959	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
95957	chr17	39090721	39091380	+	0	NA	intron (NM_020405, intron 7 of 13)	intron (NM_020405, intron 7 of 13)	34031	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
156879	chr22	42128451	42128750	+	0	NA	intron (NR_002570, intron 4 of 9).5	intron (NR_002570, intron 4 of 9).5	2208	NM_001348386	1564		NM_001002910		CYP2D7	CYP2D|CYP2D6|CYP2D7AP|CYP2D7P|CYP2D7P1|CYP2D@|P450C2D|P450DB1|RNA40057	cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)	protein-coding
139332	chr2	219558671	219558830	+	0	NA	intron (NM_015311, intron 9 of 20)	MIRb|SINE|MIR	-9603	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
32063	chr10	101079421	101079880	+	0	NA	Intergenic	Intergenic	13267	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
106628	chr18	22392671	22392830	+	0	NA	Intergenic	Intergenic	25165	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
72430	chr15	31485021	31485430	+	0	NA	intron (NM_130901, intron 13 of 13)	intron (NM_130901, intron 13 of 13)	158390	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
111371	chr19	3699201	3699650	+	0	NA	intron (NM_001300849, intron 1 of 16)	(CGCC)n|Simple_repeat|Simple_repeat	1043	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
131247	chr2	96009801	96011600	+	0	NA	non-coding (NR_003698, exon 1 of 4)	non-coding (NR_003698, exon 1 of 4)	149	NR_003698	729234		NR_003698		FAHD2CP	-	fumarylacetoacetate hydrolase domain containing 2C, pseudogene	pseudo
201249	chr6	144066021	144066280	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1551	NM_001289043	5325		NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
76036	chr15	72222271	72222630	+	0	NA	intron (NM_001206798, intron 1 of 10)	intron (NM_001206798, intron 1 of 10)	7461	NM_001206799	5315		NM_002654	ENSG00000067225	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1|p58	pyruvate kinase M1/2	protein-coding
86211	chr16	58025111	58026200	+	0	NA	promoter-TSS (NM_002428)	promoter-TSS (NM_002428)	-99	NM_002428	4324		NM_002428	ENSG00000102996	MMP15	MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15	protein-coding
226337	chr9	69422271	69422530	+	0	NA	Intergenic	Intergenic	93075	NM_004816	9413		NM_004816	ENSG00000135063	ENTREP1	C9orf61|ENTREP|FAM189A2|X123	endosomal transmembrane epsin interactor 1	protein-coding
37260	chr11	14649921	14650580	+	0	NA	intron (NM_001363569, intron 1 of 15)	AluJb|SINE|Alu	6446	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
102175	chr17	75143171	75143700	+	0	NA	intron (NM_001002032, intron 3 of 3)	AluSz|SINE|Alu	9858	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
67437	chr14	70652701	70653100	+	0	NA	intron (NM_015351, intron 1 of 2)	intron (NM_015351, intron 1 of 2)	10984	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
169766	chr3	172594221	172594480	+	0	NA	intron (NR_146714, intron 2 of 3)	AluSq2|SINE|Alu	1257	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
189045	chr5	169671251	169671350	+	0	NA	intron (NR_156756, intron 5 of 52)	intron (NR_156756, intron 5 of 52)	34025	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
77543	chr15	84745101	84745400	+	0	NA	Intergenic	L2c|LINE|L2	-3342	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
199586	chr6	119096801	119097000	+	0	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	-18236	NM_024581	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
28931	chr10	63195821	63196080	+	0	NA	intron (NM_001322258, intron 12 of 24)	intron (NM_001322258, intron 12 of 24)	62622	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
208324	chr7	66150401	66150830	+	0	NA	intron (NM_001142414, intron 4 of 4)	MIR3|SINE|MIR	35768	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
216057	chr8	10161621	10161700	+	0	NA	intron (NM_001199729, intron 2 of 6).2	intron (NM_001199729, intron 2 of 6).2	66009	NM_001199729	4482		NM_012331	ENSG00000175806	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
131323	chr2	96131411	96132400	+	0	NA	intron (NM_001002036, intron 6 of 8)	intron (NM_001002036, intron 6 of 8)	6531	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
98624	chr17	47791271	47791430	+	0	NA	Intergenic	HAL1|LINE|L1	30444	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
215312	chr7	157341051	157341350	+	0	NA	intron (NM_001363676, intron 1 of 6)	AluSg4|SINE|Alu	4196	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
231044	chr9	129621801	129622480	+	0	NA	intron (NM_001286797, intron 1 of 3)	intron (NM_001286797, intron 1 of 3)	-1364	NM_199350	375759		NM_199350	ENSG00000179058	C9orf50	-	chromosome 9 open reading frame 50	protein-coding
31842	chr10	99660751	99660850	+	0	NA	intron (NM_001349962, intron 3 of 13)	AluSx1|SINE|Alu	1171	NM_001349963	57089		NM_020354	ENSG00000198018	ENTPD7	LALP1	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
52749	chr12	56644651	56645080	+	0	NA	TTS (NR_002737)	TTS (NR_002737)	236	NR_002737	26789		NR_002737	ENSG00000207031	SNORD59A	RNU59|U59	small nucleolar RNA, C/D box 59A	snoRNA
170929	chr3	194304671	194305030	+	0	NA	intron (NR_024480, intron 2 of 2)	AluJb|SINE|Alu	7954	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
108043	chr18	59147901	59148300	+	0	NA	intron (NM_033280, intron 1 of 5)	L2|LINE|L2	8216	NM_033280	90701		NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
126201	chr2	26782301	26782500	+	0	NA	Intergenic	AluY|SINE|Alu	-3615	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
116254	chr19	17608671	17608830	+	0	NA	intron (NM_001080421, intron 41 of 41)	AluY|SINE|Alu	53101	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
67955	chr14	74837351	74837650	+	0	NA	TTS (NM_019589)	TTS (NM_019589)	38645	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
6104	chr1	27330271	27330630	+	0	NA	intron (NR_037576, intron 1 of 6)	L1ME3|LINE|L1	6576	NR_033926	644961		NR_033926		ACTG1P20	-	actin gamma 1 pseudogene 20	pseudo
46514	chr11	128446651	128447180	+	0	NA	Intergenic	L1MEc|LINE|L1	75395	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
85482	chr16	50702821	50703150	+	0	NA	intron (NR_163434, intron 2 of 12)	intron (NR_163434, intron 2 of 12)	3605	NM_001293557	64127		NM_022162	ENSG00000167207	NOD2	ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS	nucleotide binding oligomerization domain containing 2	protein-coding
186432	chr5	136020551	136020650	+	0	NA	Intergenic	Intergenic	-8388	NM_000358	7045		NM_000358	ENSG00000120708	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor beta induced	protein-coding
57103	chr12	121062101	121062500	+	0	NA	Intergenic	AluJb|SINE|Alu	-23058	NM_198213	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
223825	chr8	144896801	144897200	+	0	NA	intron (NM_001363102, intron 1 of 6)	intron (NM_001363102, intron 1 of 6)	3305	NM_001363103	58500		NM_021061	ENSG00000196150	ZNF250	ZFP647|ZNF647	zinc finger protein 250	protein-coding
237075	chrX	103679651	103680300	+	0	NA	intron (NM_001142419, intron 2 of 3)	AluSz|SINE|Alu	6724	NM_012286	9643		NM_012286	ENSG00000123562	MORF4L2	MORFL2|MRGX	mortality factor 4 like 2	protein-coding
82228	chr16	15029701	15029900	+	0	NA	TTS (NM_001285450).2	TTS (NM_001285450).2	-19403	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
212749	chr7	129921301	129921500	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	31560	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
147259	chr20	57431451	57432250	+	0	NA	Intergenic	Intergenic	-38794	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
78882	chr15	100601741	100603250	+	0	NA	promoter-TSS (NM_001040616)	promoter-TSS (NM_001040616)	-55	NM_024708	140460		NM_024708	ENSG00000183475	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding
164489	chr3	60053571	60053730	+	0	NA	intron (NM_001320901, intron 2 of 6)	intron (NM_001320901, intron 2 of 6)	27259	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
23641	chr1	230641701	230643330	+	0	NA	promoter-TSS (NM_001145036)	promoter-TSS (NM_001145036)	34	NM_001145036	22796		NM_007357	ENSG00000135775	COG2	CDG2Q|LDLC	component of oligomeric golgi complex 2	protein-coding
225185	chr9	34023101	34023400	+	0	NA	intron (NM_001370059, intron 1 of 28)	intron (NM_001370059, intron 1 of 28)	25637	NM_001370064	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
203268	chr6	169701401	169703130	+	0	NA	promoter-TSS (NM_001202550)	promoter-TSS (NM_001202550)	139	NM_001317342	387263		NM_001029863	ENSG00000185127	C6orf120	-	chromosome 6 open reading frame 120	protein-coding
132358	chr2	105752451	105753100	+	0	NA	intron (NM_001004722, intron 1 of 3)	L1PB4|LINE|L1	7712	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
10347	chr1	64925751	64926380	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	40484	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
113436	chr19	9808751	9809650	+	0	NA	Intergenic	AluJb|SINE|Alu	9879	NM_001316938	54850		NM_017703	ENSG00000127452	FBXL12	Fbl12	F-box and leucine rich repeat protein 12	protein-coding
95435	chr17	36126121	36126380	+	0	NA	Intergenic	Intergenic	22423	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
209980	chr7	92829801	92830000	+	0	NA	intron (NM_001145306, intron 2 of 7)	L2a|LINE|L2	4059	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
95612	chr17	37593421	37593880	+	0	NA	intron (NM_001163544, intron 3 of 20).2	AluSx|SINE|Alu	15768	NM_001163546	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
160481	chr3	30609621	30610530	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	3474	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
64886	chr14	35369701	35370100	+	0	NA	Intergenic	Intergenic	34849	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
166269	chr3	112471751	112472450	+	0	NA	intron (NM_181780, intron 2 of 4)	MER20|DNA|hAT-Charlie	27372	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
47890	chr12	6723721	6725150	+	0	NA	5' UTR (NM_001164093, exon 1 of 7)	5' UTR (NM_001164093, exon 1 of 7)	148	NM_001164093	50813		NM_016319	ENSG00000111652	COPS7A	CSN7|CSN7A|SGN7a	COP9 signalosome subunit 7A	protein-coding
99843	chr17	55419021	55419280	+	0	NA	intron (NM_012329, intron 1 of 6)	MIRb|SINE|MIR	2685	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
100146	chr17	58527351	58527730	+	0	NA	intron (NM_001368771, intron 3 of 13)	intron (NM_001368771, intron 3 of 13)	507	NM_001256822	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
151952	chr22	19124551	19124830	+	0	NA	Intergenic	Intergenic	-2236	NM_001173533	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
59760	chr13	30119351	30120230	+	0	NA	Intergenic	Intergenic	-10915	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
10149	chr1	60281451	60281550	+	0	NA	Intergenic	Intergenic	-207730	NM_152377	127795		NM_152377	ENSG00000162598	C1orf87	CREF	chromosome 1 open reading frame 87	protein-coding
200640	chr6	136937951	136938580	+	0	NA	Intergenic	AluSz|SINE|Alu	15964	NM_001008783	340146		NM_001008783	ENSG00000182747	SLC35D3	FRCL1	solute carrier family 35 member D3	protein-coding
62596	chr13	100128801	100129000	+	0	NA	intron (NM_001352611, intron 4 of 21)	L2|LINE|L2	39807	NR_148027	5095		NM_000282	ENSG00000175198	PCCA	-	propionyl-CoA carboxylase subunit alpha	protein-coding
231450	chr9	131268501	131269740	+	0	NA	intron (NM_033387, intron 1 of 1)	AluSx|SINE|Alu	7390	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
174921	chr4	49113371	49113800	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	126943	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
44576	chr11	108238971	108240200	+	0	NA	intron (NM_000051, intron 5 of 62)	L1MB3|LINE|L1	16056	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
74877	chr15	63579421	63579680	+	0	NA	intron (NR_046342, intron 12 of 15)	L1ME4b|LINE|L1	-17837	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
41541	chr11	66286721	66286980	+	0	NA	intron (NM_001300861, intron 4 of 6)	MIRb|SINE|MIR	2293	NM_001300861	10897		NM_020470	ENSG00000174851	YIF1A	54TM|FinGER7|YIF1|YIF1P	Yip1 interacting factor homolog A, membrane trafficking protein	protein-coding
45549	chr11	118775951	118776450	+	0	NA	intron (NM_004397, intron 4 of 13)	intron (NM_004397, intron 4 of 13)	14748	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
53475	chr12	66130051	66131550	+	0	NA	promoter-TSS (NR_125724)	promoter-TSS (NR_125724)	49	NR_125724	103625681		NR_125724	ENSG00000239335	LLPH-DT	LLPH-AS1	LLPH divergent transcript	ncRNA
134675	chr2	144474221	144474480	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-45264	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
158253	chr22	50308701	50308930	+	0	NA	TTS (NM_001001794)	TTS (NM_001001794)	-1169	NM_001376869	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
61192	chr13	49279551	49279850	+	0	NA	intron (NM_030911, intron 7 of 9)	intron (NM_030911, intron 7 of 9)	31775	NR_036439	81602		NM_030911	ENSG00000102543	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
192416	chr6	24860471	24861300	+	0	NA	intron (NM_001286447, intron 8 of 13)	intron (NM_001286447, intron 8 of 13)	16385	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
190590	chr5	181100051	181100730	+	0	NA	Intergenic	CpG	24914	NM_001258283	26693		NM_001258283	ENSG00000185372	OR2V1	OR2V1P|OST265	olfactory receptor family 2 subfamily V member 1	protein-coding
47865	chr12	6638421	6638880	+	0	NA	intron (NM_032489, intron 9 of 9)	MIR3|SINE|MIR	-2691	NM_020400	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
129114	chr2	65169151	65169650	+	0	NA	Intergenic	Intergenic	-39099	NM_015543	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
151602	chr22	11702271	11702950	+	0	NA	Intergenic	ACRO1|Satellite|acro	-194796	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
169330	chr3	159987371	159987780	+	0	NA	intron (NR_108088, intron 9 of 9)	intron (NR_108088, intron 9 of 9)	-1260	NM_001354583	3592		NM_000882	ENSG00000168811	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
154082	chr22	30893971	30894330	+	0	NA	intron (NM_030758, intron 12 of 13)	intron (NM_030758, intron 12 of 13)	12469	NM_001282742	23762		NM_030758	ENSG00000184792	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
217549	chr8	29339951	29341080	+	0	NA	intron (NM_001394, intron 1 of 3)	intron (NM_001394, intron 1 of 3)	8290	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
59795	chr13	30346271	30347330	+	0	NA	intron (NR_024464, intron 4 of 4)	MSTB1|LTR|ERVL-MaLR	27114	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
53323	chr12	64614501	64614900	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSz6|SINE|Alu	4205	NM_178169	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
145058	chr20	38436701	38436900	+	0	NA	Intergenic	MIR|SINE|MIR	-1423	NR_152754	388796		NR_015366	ENSG00000196756	SNHG17	-	small nucleolar RNA host gene 17	ncRNA
173047	chr4	5104651	5104750	+	0	NA	intron (NM_018401, intron 1 of 11)	L1ME3A|LINE|L1	53220	NM_018401	55351		NM_018401	ENSG00000152953	STK32B	HSA250839|STK32|STKG6|YANK2	serine/threonine kinase 32B	protein-coding
191943	chr6	15956021	15956280	+	0	NA	Intergenic	Intergenic	-172936	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
35707	chr11	1930001	1930630	+	0	NA	intron (NM_001363561, intron 9 of 16)	intron (NM_001363561, intron 9 of 16)	7484	NM_001367843	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
25616	chr10	8072851	8073330	+	0	NA	intron (NM_001002295, intron 5 of 5)	AluSx4|SINE|Alu	18402	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
40763	chr11	64853071	64854280	+	0	NA	3' UTR (NM_006795, exon 5 of 5)	3' UTR (NM_006795, exon 5 of 5)	-9022	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
149146	chr21	17792501	17792700	+	0	NA	promoter-TSS (NR_038870)	promoter-TSS (NR_038870)	-91	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
153311	chr22	24216651	24216980	+	0	NA	Intergenic	Intergenic	28327	NM_001302465	2687		NM_004121	ENSG00000099998	GGT5	GGL|GGT 5|GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
113391	chr19	9150171	9150330	+	0	NA	intron (NM_001190791, intron 1 of 5)	intron (NM_001190791, intron 1 of 5)	9853	NR_102435	57693		NM_020933	ENSG00000130803	ZNF317	-	zinc finger protein 317	protein-coding
73318	chr15	41899921	41900380	+	0	NA	3' UTR (NM_139265, exon 6 of 6)	3' UTR (NM_139265, exon 6 of 6)	-6097	NM_016642	51332		NM_016642	ENSG00000137877	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin beta, non-erythrocytic 5	protein-coding
144202	chr20	34306271	34306430	+	0	NA	intron (NM_001161766, intron 1 of 9)	intron (NM_001161766, intron 1 of 9)	-2995	NM_000687	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
627	chr1	1330951	1331650	+	0	NA	promoter-TSS (NM_152228)	promoter-TSS (NM_152228)	20	NM_152228	83756		NM_152228	ENSG00000169962	TAS1R3	T1R3	taste 1 receptor member 3	protein-coding
19987	chr1	185042801	185043300	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-2508	NM_007212	6045		NM_007212	ENSG00000121481	RNF2	BAP-1|BAP1|DING|HIPI3|LUSYAM|RING1B|RING2	ring finger protein 2	protein-coding
81244	chr16	4604951	4605750	+	0	NA	Intergenic	Intergenic	9538	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
199978	chr6	127982171	127982600	+	0	NA	intron (NM_001291981, intron 27 of 32).2	AluY|SINE|Alu	-45480	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
226516	chr9	71878671	71878830	+	0	NA	intron (NM_016014, intron 1 of 4)	intron (NM_016014, intron 1 of 4)	32443	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
200996	chr6	139539771	139540750	+	0	NA	Intergenic	Intergenic	-65664	NR_033919	645434		NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA
124818	chr2	7649821	7650180	+	0	NA	Intergenic	L2a|LINE|L2	228739	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
143310	chr20	25361671	25361830	+	0	NA	intron (NM_001042472, intron 1 of 12)	AluY|SINE|Alu	29085	NM_015600	26090		NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12	abhydrolase domain containing 12, lysophospholipase	protein-coding
108376	chr18	68735701	68735980	+	0	NA	intron (NM_001093729, intron 3 of 9)	intron (NM_001093729, intron 3 of 9)	20624	NM_001093729	79839		NM_024781	ENSG00000150636	CCDC102B	ACY1L|AN|C18orf14|HsT1731	coiled-coil domain containing 102B	protein-coding
12805	chr1	109823901	109824100	+	0	NA	Intergenic	Intergenic	-60077	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
73582	chr15	44529071	44529230	+	0	NA	TTS (NM_016396)	TTS (NM_016396)	7750	NR_034171	645212		NR_034170	ENSG00000179523	EIF3J-DT	EIF3J-AS1	EIF3J divergent transcript	ncRNA
9697	chr1	53084351	53085250	+	0	NA	3' UTR (NM_001199080, exon 13 of 13)	3' UTR (NM_001199080, exon 13 of 13)	22587	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
12491	chr1	107953121	107953780	+	0	NA	intron (NM_006113, intron 1 of 26)	MIRb|SINE|MIR	-10993	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
111877	chr19	4653421	4653950	+	0	NA	3' UTR (NM_001167942, exon 2 of 2)	3' UTR (NM_001167942, exon 2 of 2)	13668	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
23010	chr1	226184651	226184850	+	0	NA	intron (NM_022735, intron 1 of 7)	AluSz6|SINE|Alu	1991	NM_022735	64746		NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
3620	chr1	16371421	16372480	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	4708	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
11833	chr1	92903171	92903530	+	0	NA	intron (NM_001006605, intron 1 of 4)	intron (NM_001006605, intron 1 of 4)	-26200	NM_001252271	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
169284	chr3	158109751	158110680	+	0	NA	5' UTR (NM_001271838, exon 1 of 10)	5' UTR (NM_001271838, exon 1 of 10)	126	NM_001271838	51319		NM_016625	ENSG00000174891	RSRC1	BM-011|MRT70|SFRS21|SRrp53	arginine and serine rich coiled-coil 1	protein-coding
226831	chr9	77808021	77808480	+	0	NA	intron (NM_002072, intron 3 of 6)	intron (NM_002072, intron 3 of 6)	-159928	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
198242	chr6	99393651	99394630	+	0	NA	promoter-TSS (NM_017421)	promoter-TSS (NM_017421)	55	NM_017421	51805		NM_017421	ENSG00000132423	COQ3	DHHBMT|DHHBMTASE|UG0215E05|bA9819.1	coenzyme Q3, methyltransferase	protein-coding
46135	chr11	123041071	123041450	+	0	NA	Intergenic	AluSz|SINE|Alu	16896	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
56488	chr12	116244971	116245130	+	0	NA	intron (NM_015335, intron 1 of 30)	HAL1|LINE|L1	32643	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
20273	chr1	194289421	194290230	+	0	NA	Intergenic	LTR77|LTR|ERV1	985080	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
92523	chr17	8923901	8924100	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	-11483	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
104171	chr17	80414451	80415780	+	0	NA	promoter-TSS (NM_173627)	promoter-TSS (NM_173627)	-52	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
173229	chr4	6915471	6915730	+	0	NA	intron (NM_020773, intron 1 of 13)	MIRb|SINE|MIR	5774	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
89689	chr16	89388871	89389230	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-41868	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
84935	chr16	31292851	31293150	+	0	NA	intron (NM_000632, intron 12 of 29)	L1PA14|LINE|L1	33025	NM_000632	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
163743	chr3	52353501	52353700	+	0	NA	exon (NM_015512, exon 20 of 78)	exon (NM_015512, exon 20 of 78)	37281	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
199034	chr6	111294501	111295100	+	0	NA	Intergenic	Intergenic	35461	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
13436	chr1	114340771	114341970	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	169833	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
133138	chr2	112669601	112670200	+	0	NA	Intergenic	AluSx1|SINE|Alu	23961	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
199301	chr6	112033251	112034450	+	0	NA	Intergenic	Intergenic	-20254	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
212776	chr7	130054301	130054880	+	0	NA	Intergenic	AluY|SINE|Alu	-3139	NM_001282191	51530		NM_016478	ENSG00000091732	ZC3HC1	HSPC216|NIPA	zinc finger C3HC-type containing 1	protein-coding
117524	chr19	20278371	20278600	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	111271	NM_052852	90649		NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
94982	chr17	32319021	32320230	+	0	NA	intron (NM_138328, intron 8 of 8)	intron (NM_138328, intron 8 of 8)	22548	NM_022344	64149		NM_022344	ENSG00000108666	C17orf75	NJMU-R1|SRI2	chromosome 17 open reading frame 75	protein-coding
57078	chr12	121022171	121022830	+	0	NA	intron (NM_001261825, intron 3 of 3)	AluJb|SINE|Alu	-6013	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
146529	chr20	49940451	49941000	+	0	NA	intron (NM_018683, intron 1 of 5)	intron (NM_018683, intron 1 of 5)	4328	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
223792	chr8	144730121	144730600	+	0	NA	intron (NM_138367, intron 4 of 4)	CpG	25171	NM_138367	90987		NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
21788	chr1	206947621	206948080	+	0	NA	Intergenic	L1PA10|LINE|L1	-1384	NM_002644	5284		NM_002644	ENSG00000162896	PIGR	-	polymeric immunoglobulin receptor	protein-coding
200968	chr6	139279451	139280250	+	0	NA	intron (NM_153235, intron 2 of 9)	intron (NM_153235, intron 2 of 9)	12148	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
127899	chr2	46259351	46259450	+	0	NA	Intergenic	Intergenic	-38007	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
217988	chr8	38378271	38379330	+	0	NA	intron (NM_017778, intron 1 of 9)	AluSg|SINE|Alu	3471	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
20086	chr1	186374451	186376220	+	0	NA	promoter-TSS (NM_017847)	promoter-TSS (NM_017847)	-82	NM_003292	7175		NM_003292	ENSG00000047410	TPR	MRT79	translocated promoter region, nuclear basket protein	protein-coding
80035	chr16	1952251	1952350	+	0	NA	intron (NM_005061, intron 3 of 9)	intron (NM_005061, intron 3 of 9)	2389	NM_005061	6123		NM_005061	ENSG00000140986	RPL3L	CMD2D	ribosomal protein L3 like	protein-coding
238841	chrX	154466201	154466430	+	0	NA	intron (NM_017514, intron 15 of 32)	CpG-30205	8034	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
21123	chr1	203637501	203638030	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	9828	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
39058	chr11	47952001	47952350	+	0	NA	Intergenic	AluSp|SINE|Alu	-28384	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
120522	chr19	44850201	44851400	+	0	NA	intron (NM_002856, intron 1 of 5)	intron (NM_002856, intron 1 of 5)	4503	NM_002856	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
60660	chr13	42990051	42990150	+	0	NA	intron (NM_033255, intron 1 of 10)	intron (NM_033255, intron 1 of 10)	2141	NM_033255	94240		NM_033255	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1	protein-coding
163644	chr3	52142701	52142900	+	0	NA	intron (NM_001161580, intron 6 of 9)	intron (NM_001161580, intron 6 of 9)	11623	NM_015426	25886		NM_015426	ENSG00000164087	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
201276	chr6	144262771	144262930	+	0	NA	Intergenic	MIRb|SINE|MIR	-28887	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
36076	chr11	2987571	2989330	+	0	NA	intron (NM_001369386, intron 2 of 16).2	L2a|LINE|L2	2653	NM_001369379	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
63531	chr13	114352521	114353600	+	0	NA	Intergenic	TAR1|Satellite|telo	-19112	NR_126391	104355150		NR_126391		LINC01054	-	long intergenic non-protein coding RNA 1054	ncRNA
125442	chr2	12035571	12036000	+	0	NA	intron (NR_110196, intron 2 of 5)	intron (NR_110196, intron 2 of 5)	28669	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
32470	chr10	102653301	102653780	+	0	NA	intron (NM_001345950, intron 1 of 4)	intron (NM_001345950, intron 1 of 4)	9045	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
90082	chr16	90018221	90018680	+	0	NA	intron (NM_001288708, intron 1 of 4)	intron (NM_001288708, intron 1 of 4)	1006	NM_001042610	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
129636	chr2	70137501	70138900	+	0	NA	Intergenic	Intergenic	-12884	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
55647	chr12	107264771	107264930	+	0	NA	Intergenic	L1ME3A|LINE|L1	-53584	NM_001347943	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
24986	chr10	3093001	3094080	+	0	NA	intron (NM_001345944, intron 2 of 21)	intron (NM_001345944, intron 2 of 21)	-11069	NM_001323074	5214		NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
94791	chr17	31092401	31092680	+	0	NA	Intergenic	Intergenic	1885	NR_039886	100616266		NR_039886	ENSG00000265444	MIR4733	-	microRNA 4733	ncRNA
229130	chr9	114468971	114469130	+	0	NA	intron (NM_015404, intron 2 of 11)	MIR|SINE|MIR	34165	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
233409	chr9	137576321	137576980	+	0	NA	intron (NM_001346386, intron 1 of 7)	AluY|SINE|Alu	1942	NM_001346373	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
103407	chr17	78184451	78185480	+	0	NA	intron (NM_001363848, intron 3 of 5)	intron (NM_001363848, intron 3 of 5)	2087	NM_001346663	7083		NM_003258	ENSG00000167900	TK1	TK2	thymidine kinase 1	protein-coding
84457	chr16	30434101	30434750	+	0	NA	Intergenic	AluSx|SINE|Alu	-4395	NM_024096	79077		NM_024096	ENSG00000179958	DCTPP1	CDA03|RS21C6|XTP3TPA	dCTP pyrophosphatase 1	protein-coding
36283	chr11	3803601	3803800	+	0	NA	intron (NR_027017, intron 1 of 7)	AluSx1|SINE|Alu	-4310	NR_027018	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
156846	chr22	41968951	41969650	+	0	NA	promoter-TSS (NM_001363845)	promoter-TSS (NM_001363845)	-143	NM_001363845	55964		NM_019106	ENSG00000100167	SEPTIN3	SEP3|SEPT3|bK250D10.3	septin 3	protein-coding
60695	chr13	43877001	43877950	+	0	NA	intron (NM_144974, intron 1 of 6)	intron (NM_144974, intron 1 of 6)	-1703	NM_001128303	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
205935	chr7	25949601	25950130	+	0	NA	TTS (NR_029597)	TTS (NR_029597)	121	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
37486	chr11	18395511	18396880	+	0	NA	promoter-TSS (NM_001165414)	promoter-TSS (NM_001165414)	-71	NM_001165414	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
5942	chr1	26884421	26884680	+	0	NA	intron (NM_018066, intron 3 of 4)	L2c|LINE|L2	5733	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
8906	chr1	43968221	43968780	+	0	NA	TTS (NM_014652)	TTS (NM_014652)	-1510	NM_001039589	1802		NM_001384	ENSG00000132768	DPH2	DEDSSH2|DPH2L2	diphthamide biosynthesis 2	protein-coding
28045	chr10	43256951	43257050	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	10065	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
203323	chr6	170175021	170175850	+	0	NA	Intergenic	Intergenic	14793	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
85980	chr16	57414971	57415130	+	0	NA	intron (NM_002987, intron 2 of 3)	intron (NM_002987, intron 2 of 3)	10283	NM_002987	6361		NM_002987	ENSG00000102970	CCL17	A-152E5.3|ABCD-2|SCYA17|TARC	C-C motif chemokine ligand 17	protein-coding
115564	chr19	15672721	15673450	+	0	NA	promoter-TSS (NR_117085)	promoter-TSS (NR_117085)	-2	NR_117085	66002		NM_023944	ENSG00000186204	CYP4F12	CYPIVF12|F22329_1	cytochrome P450 family 4 subfamily F member 12	protein-coding
225202	chr9	34120471	34120630	+	0	NA	intron (NM_015397, intron 2 of 8)	AluSx|SINE|Alu	6148	NM_015397	25853		NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
21316	chr1	204514621	204515180	+	0	NA	Intergenic	Intergenic	-1479	NM_001204172	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
214338	chr7	149422101	149423430	+	0	NA	Intergenic	CpG	38297	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
121524	chr19	47224471	47224850	+	0	NA	intron (NM_001127242, intron 1 of 1)	L1ME3Cz|LINE|L1	-2282	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
49728	chr12	31328671	31328850	+	0	NA	Intergenic	AluSp|SINE|Alu	-2573	NM_001135811	58516		NM_021238	ENSG00000139146	SINHCAF	C12orf14|FAM60A|L4|TERA	SIN3-HDAC complex associated factor	protein-coding
116311	chr19	17790051	17790650	+	0	NA	Intergenic	Intergenic	-4788	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
228918	chr9	113111351	113111950	+	0	NA	promoter-TSS (NR_024376)	promoter-TSS (NR_024376)	27	NR_024376	100128385		NR_024376	ENSG00000225684	FAM225B	C9orf110|LINC00256B|NCRNA00256B	family with sequence similarity 225 member B	ncRNA
158889	chr3	9912251	9912950	+	0	NA	intron (NM_153480, intron 12 of 15)	Charlie22a|DNA|hAT-Charlie	-4474	NM_001203264	84818		NM_032732	ENSG00000163702	IL17RC	CANDF9|IL17-RL|IL17RL	interleukin 17 receptor C	protein-coding
156391	chr22	41106501	41107300	+	0	NA	intron (NM_001362843, intron 1 of 29)	intron (NM_001362843, intron 1 of 29)	14308	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
224058	chr9	3525401	3527990	+	0	NA	promoter-TSS (NM_002919)	promoter-TSS (NM_002919)	-694	NM_134428	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
22881	chr1	225785971	225786130	+	0	NA	intron (NM_003133, intron 2 of 2)	intron (NM_003133, intron 2 of 2)	8224	NM_003133	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
128070	chr2	47863751	47864250	+	0	NA	intron (NM_001190274, intron 1 of 22)	Helitron2Na_Mam|RC?|Helitron?	24719	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
133249	chr2	113276751	113278030	+	0	NA	intron (NM_013952, intron 2 of 11)	CpG	1531	NM_013953	7849		NM_003466	ENSG00000125618	PAX8	PAX-8	paired box 8	protein-coding
212572	chr7	128908771	128908930	+	0	NA	intron (NM_199349, intron 1 of 20)	intron (NM_199349, intron 1 of 20)	1859	NM_001366122	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
203247	chr6	169212951	169214230	+	0	NA	intron (NR_134621, intron 1 of 2)	intron (NR_134621, intron 1 of 2)	378	NR_134621	101929523		NR_134621		THBS2-AS1	-	THBS2 antisense RNA 1	ncRNA
61004	chr13	48042221	48042680	+	0	NA	TTS (NM_001304745)	TTS (NM_001304745)	4724	NM_018283	55270		NM_018283	ENSG00000136159	NUDT15	MTH2|NUDT15D	nudix hydrolase 15	protein-coding
94266	chr17	28697601	28698350	+	0	NA	exon (NM_001320755, exon 33 of 38)	exon (NM_001320755, exon 33 of 38)	12129	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
223596	chr8	144302871	144303030	+	0	NA	intron (NM_005526, intron 1 of 12)	L1M5|LINE|L1	11346	NM_005526	3297		NM_005526	ENSG00000185122	HSF1	HSTF1	heat shock transcription factor 1	protein-coding
238396	chrX	150459201	150459480	+	0	NA	intron (NM_001177466, intron 1 of 5)	intron (NM_001177466, intron 1 of 5)	13886	NM_001177466	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
86842	chr16	67924521	67925000	+	0	NA	intron (NM_006742, intron 2 of 2)	intron (NM_006742, intron 2 of 2)	7102	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
70710	chr14	103331301	103331500	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2837	NM_001969	1983		NM_001969	ENSG00000100664	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
2981	chr1	12001471	12002180	+	0	NA	exon (NM_001127660, exon 9 of 18)	exon (NM_001127660, exon 9 of 18)	-17673	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
173172	chr4	6703021	6703280	+	0	NA	Intergenic	L1MC4|LINE|L1	6715	NM_203462	114932		NM_152301	ENSG00000178988	MRFAP1L1	PP784	Morf4 family associated protein 1 like 1	protein-coding
146390	chr20	49291201	49292100	+	0	NA	Intergenic	L2a|LINE|L2	10967	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
199850	chr6	127767571	127767800	+	0	NA	intron (NM_001010923, intron 4 of 5).2	Tigger3b|DNA|TcMar-Tigger	87503	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
130976	chr2	87584301	87584700	+	0	NA	Intergenic	Intergenic	-45255	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
50180	chr12	45993801	45994200	+	0	NA	Intergenic	AluJb|SINE|Alu	-3426	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
54332	chr12	89661671	89662250	+	0	NA	intron (NM_001366524, intron 1 of 21)	intron (NM_001366524, intron 1 of 21)	46878	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
16453	chr1	154583921	154584380	+	0	NA	3' UTR (NM_001365048, exon 15 of 15)	3' UTR (NM_001365048, exon 15 of 15)	16372	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
22188	chr1	212321971	212322330	+	0	NA	intron (NM_001199756, intron 1 of 12)	SVA_D|Retroposon|SVA	20292	NM_001199756	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
74169	chr15	55316871	55317030	+	0	NA	TTS (NM_001308423)	TTS (NM_001308423)	2173	NM_001308423	101928527		NM_001308421	ENSG00000225973	PIGBOS1	HP06981	PIGB opposite strand 1	protein-coding
151819	chr22	18389451	18389900	+	0	NA	Intergenic	Intergenic	-3119	NR_165634	729461		NM_201401	ENSG00000274044	FAM230J	LINC01660	family with sequence similarity 230 member J	ncRNA
111899	chr19	4680371	4680950	+	0	NA	intron (NM_001384628, intron 20 of 21)	(A)n|Simple_repeat|Simple_repeat	1378	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
221988	chr8	130001101	130001650	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	7078	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
24591	chr1	245942751	245943280	+	0	NA	intron (NM_001375963, intron 5 of 11)	L1PA10|LINE|L1	45536	NM_001375965	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
17256	chr1	156371521	156372130	+	0	NA	non-coding (NR_146763, exon 2 of 12)	non-coding (NR_146763, exon 2 of 12)	2614	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
180503	chr5	14261471	14261830	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	118308	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
91312	chr17	4334601	4335750	+	0	NA	intron (NM_003342, intron 1 of 5)	L1M8|LINE|L1	31499	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
72932	chr15	40430271	40430430	+	0	NA	intron (NR_148925, intron 13 of 13)	L2b|LINE|L2	-9407	NM_001301132	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
120726	chr19	45341751	45342050	+	0	NA	intron (NM_177417, intron 1 of 12)	intron (NM_177417, intron 1 of 12)	1150	NM_177417	147700		NM_145275	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
35219	chr11	823151	823250	+	0	NA	intron (NM_020376, intron 5 of 9)	AluY|SINE|Alu	4286	NM_020376	57104		NM_020376	ENSG00000177666	PNPLA2	1110001C14Rik|ATGL|FP17548|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin like phospholipase domain containing 2	protein-coding
31211	chr10	91298171	91298950	+	0	NA	Intergenic	Intergenic	77897	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
45287	chr11	118049821	118050080	+	0	NA	intron (NM_001354434, intron 2 of 5)	intron (NM_001354434, intron 2 of 5)	-27062	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
79755	chr16	1353751	1354480	+	0	NA	intron (NM_032520, intron 3 of 10)	intron (NM_032520, intron 3 of 10)	2184	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
212465	chr7	128474071	128474780	+	0	NA	Intergenic	Intergenic	-2323	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
22723	chr1	224188351	224188950	+	0	NA	intron (NM_001321542, intron 1 of 2)	L1MB7|LINE|L1	4970	NM_001321542	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
75429	chr15	65789371	65790130	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	2543	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
71421	chr14	105578621	105579700	+	0	NA	Intergenic	Intergenic	-41956	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
184086	chr5	93596371	93596550	+	0	NA	Intergenic	Intergenic	13238	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
23147	chr1	226719351	226720300	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	19350	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
194545	chr6	33320671	33321030	+	0	NA	exon (NM_001141970, exon 3 of 8).3	exon (NM_001141970, exon 3 of 8).3	2109	NM_001350	1616		NM_001350	ENSG00000204209	DAXX	BING2|DAP6|EAP1|SMIM40	death domain associated protein	protein-coding
181606	chr5	43556221	43557790	+	0	NA	promoter-TSS (NM_182789)	promoter-TSS (NM_182789)	72	NM_006451	10605		NM_006451	ENSG00000172239	PAIP1	-	poly(A) binding protein interacting protein 1	protein-coding
131268	chr2	96061401	96061800	+	0	NA	Intergenic	Intergenic	-25626	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
192325	chr6	22036371	22036530	+	0	NA	intron (NR_015410, intron 7 of 11)	intron (NR_015410, intron 7 of 11)	110743	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
49183	chr12	15289371	15289530	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-33058	NM_030667	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
204695	chr7	5511501	5511700	+	0	NA	intron (NM_024963, intron 1 of 4)	AluSp|SINE|Alu	2209	NM_001363441	80028		NM_024963	ENSG00000155034	FBXL18	Fbl18	F-box and leucine rich repeat protein 18	protein-coding
24262	chr1	236399601	236400300	+	0	NA	intron (NM_080738, intron 1 of 5)	intron (NM_080738, intron 1 of 5)	4537	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
88829	chr16	87465451	87465550	+	0	NA	intron (NM_015144, intron 1 of 12)	intron (NM_015144, intron 1 of 12)	27524	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
18874	chr1	168081921	168082600	+	0	NA	3' UTR (NM_001267612, exon 6 of 6)	3' UTR (NM_001267612, exon 6 of 6)	54447	NM_001267613	23432		NM_007369	ENSG00000143147	GPR161	RE2	G protein-coupled receptor 161	protein-coding
4678	chr1	22639471	22639630	+	0	NA	3' UTR (NM_015991, exon 3 of 3)	3' UTR (NM_015991, exon 3 of 3)	2788	NM_001347466	712		NM_015991	ENSG00000173372	C1QA	C1QD1	complement C1q A chain	protein-coding
66600	chr14	63632701	63633230	+	0	NA	intron (NM_001382425, intron 1 of 3)	MIR|SINE|MIR	8906	NM_001382427	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
103044	chr17	77138671	77139080	+	0	NA	intron (NM_001204410, intron 3 of 18)	intron (NM_001204410, intron 3 of 18)	-2094	NM_001143999	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
190023	chr5	177497001	177499800	+	0	NA	promoter-TSS (NM_213636)	promoter-TSS (NM_213636)	-795	NM_213636	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
91588	chr17	5235271	5235630	+	0	NA	promoter-TSS (NM_001319190)	promoter-TSS (NM_001319190)	-590	NM_001271842	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
148505	chr20	64079121	64081330	+	0	NA	promoter-TSS (NM_005873)	promoter-TSS (NM_005873)	143	NM_182647	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
181956	chr5	55061371	55063080	+	0	NA	Intergenic	Intergenic	37969	NM_002104	3003		NM_002104	ENSG00000113088	GZMK	TRYP2	granzyme K	protein-coding
175153	chr4	55543871	55544280	+	0	NA	intron (NM_004898, intron 1 of 22)	intron (NM_004898, intron 1 of 22)	1857	NM_001267843	9575		NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
15854	chr1	151405401	151406100	+	0	NA	exon (NM_145796, exon 17 of 17)	exon (NM_145796, exon 17 of 17)	6177	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
171076	chr3	195455771	195456330	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-13030	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
83895	chr16	28980201	28980780	+	0	NA	intron (NM_032038, intron 5 of 11)	intron (NM_032038, intron 5 of 11)	-4313	NM_001014989	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
215737	chr8	1787821	1788500	+	0	NA	Intergenic	Intergenic	-12965	NR_037445	100500912		NR_037445	ENSG00000283858	MIR3674	-	microRNA 3674	ncRNA
83401	chr16	27176001	27176200	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-27426	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
210469	chr7	100148351	100149850	+	0	NA	intron (NR_134530, intron 1 of 3)	intron (NR_134530, intron 1 of 3)	122	NR_134530								
137487	chr2	197141251	197141350	+	0	NA	intron (NM_153697, intron 3 of 9)	L1ME3G|LINE|L1	-56691	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
216281	chr8	12524201	12524650	+	0	NA	intron (NR_040091, intron 5 of 6)	HERVS71-int|LTR|ERV1	87412	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
207489	chr7	44643451	44643750	+	0	NA	intron (NM_001363523, intron 2 of 23)	intron (NM_001363523, intron 2 of 23)	36973	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
103922	chr17	79824701	79825250	+	0	NA	intron (NR_146504, intron 2 of 2)	intron (NR_146504, intron 2 of 2)	1523	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
136763	chr2	181392421	181392680	+	0	NA	intron (NR_130784, intron 4 of 4)	MLT1G1|LTR|ERVL-MaLR	-64342	NM_001316312	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
139560	chr2	224928951	224929050	+	0	NA	intron (NM_001363762, intron 2 of 55)	L2a|LINE|L2	18049	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
131296	chr2	96107651	96107950	+	0	NA	Intergenic	Intergenic	8771	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
194827	chr6	34369501	34369730	+	0	NA	intron (NM_001202470, intron 5 of 8)	intron (NM_001202470, intron 5 of 8)	23054	NM_006703	11165		NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
186842	chr5	139450971	139451600	+	0	NA	intron (NM_001293739, intron 8 of 9)	(TG)n|Simple_repeat|Simple_repeat	11458	NM_001293739	641700		NM_001077693	ENSG00000249751	ECSCR	ARIA|ECSM2	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding
142181	chr20	2875221	2875530	+	0	NA	intron (NM_001385311, intron 1 of 20)	intron (NM_001385311, intron 1 of 20)	1894	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
152180	chr22	20097801	20098000	+	0	NA	intron (NM_022720, intron 9 of 13)	AluSc|SINE|Alu	11842	NR_031706	100302197		NR_031706	ENSG00000284464	MIR1306	MIRN1306|hsa-mir-1306|mir-1306	microRNA 1306	ncRNA
197741	chr6	87160771	87160930	+	0	NA	intron (NM_015021, intron 1 of 7)	MER20B|DNA|hAT-Charlie	5285	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
84610	chr16	30688521	30688980	+	0	NA	Intergenic	Intergenic	9721	NM_001256932	730183		NM_001256932	ENSG00000261840	LOC730183	-	uncharacterized LOC730183	ncRNA
190329	chr5	179623401	179625580	+	0	NA	promoter-TSS (NM_001364244)	promoter-TSS (NM_001364244)	110	NM_001364241	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
83860	chr16	28901671	28903930	+	0	NA	exon (NM_004320, exon 19 of 23)	exon (NM_004320, exon 19 of 23)	22438	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
221549	chr8	124924671	124924930	+	0	NA	Intergenic	MIR|SINE|MIR	-17208	NR_027321	157381		NR_027321	ENSG00000249816	LINC00964	-	long intergenic non-protein coding RNA 964	ncRNA
51347	chr12	51421251	51421630	+	0	NA	intron (NM_001258401, intron 1 of 24)	intron (NM_001258401, intron 1 of 24)	-3391	NM_001258402	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
150703	chr21	43721451	43721550	+	0	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	2371	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
115105	chr19	14333371	14333730	+	0	NA	promoter-TSS (NR_134916)	promoter-TSS (NR_134916)	-193	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
113846	chr19	10636451	10636780	+	0	NA	intron (NM_001363611, intron 15 of 22)	CpG	11062	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
139689	chr2	227404551	227405250	+	0	NA	Intergenic	Intergenic	-25594	NM_024795	79853		NM_024795	ENSG00000168955	TM4SF20	PRO994|SLI5|TCCE518	transmembrane 4 L six family member 20	protein-coding
209687	chr7	80993651	80993750	+	0	NA	Intergenic	AluY|SINE|Alu	-71311	NM_001350120	10512		NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	semaphorin 3C	protein-coding
196151	chr6	42449901	42450100	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	2051	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
134941	chr2	151592871	151593030	+	0	NA	intron (NM_001164508, intron 94 of 181)	intron (NM_001164508, intron 94 of 181)	141526	NM_001271208	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
62792	chr13	109216321	109216580	+	0	NA	Intergenic	MIR|SINE|MIR	-49147	NR_047700	100885782		NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
44772	chr11	112281821	112282080	+	0	NA	intron (NR_126004, intron 1 of 3)	MLT1M|LTR|ERVL-MaLR	11201	NR_126004	283140		NR_126004	ENSG00000250303	LINC02762	-	long intergenic non-protein coding RNA 2762	ncRNA
233224	chr9	137236451	137237380	+	0	NA	TTS (NM_001177317)	TTS (NM_001177317)	-4372	NM_006088	10383		NM_006088	ENSG00000188229	TUBB4B	Beta2|LCAEOD|TUBB2|TUBB2C	tubulin beta 4B class IVb	protein-coding
89381	chr16	88799201	88799530	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-4424	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
69497	chr14	95522471	95523800	+	0	NA	Intergenic	Intergenic	-6485	NM_001384284	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
34638	chr10	133315671	133316880	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-3938	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
6991	chr1	31826021	31826280	+	0	NA	Intergenic	Intergenic	-10099	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
209719	chr7	86978621	86979550	+	0	NA	intron (NM_001142749, intron 1 of 21)	Kanga11a|DNA|TcMar-Tc2	-13186	NM_152748	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
139717	chr2	227818171	227818730	+	0	NA	TTS (NM_001130046)	TTS (NM_001130046)	4608	NM_004591	6364		NM_004591	ENSG00000115009	CCL20	CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38	C-C motif chemokine ligand 20	protein-coding
611	chr1	1311271	1313400	+	0	NA	TTS (NR_144369)	TTS (NR_144369)	231	NR_106785	102465435		NR_106785	ENSG00000283712	MIR6727	hsa-mir-6727	microRNA 6727	ncRNA
234191	chrX	12792871	12793030	+	0	NA	intron (NM_002765, intron 1 of 6)	intron (NM_002765, intron 1 of 6)	1538	NM_002765	5634		NM_002765	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
148164	chr20	63526751	63526850	+	0	NA	Intergenic	AluSp|SINE|Alu	6035	NM_024299	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
173404	chr4	8089701	8089900	+	0	NA	intron (NM_001130086, intron 3 of 17)	intron (NM_001130086, intron 3 of 17)	-17812	NM_001286688	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
136664	chr2	180938501	180938730	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-41770	NM_001278555	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
150954	chr21	44310621	44310880	+	0	NA	intron (NM_001002021, intron 5 of 24)	intron (NM_001002021, intron 5 of 24)	10697	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
216000	chr8	8894851	8895430	+	0	NA	Intergenic	Intergenic	-1510	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
3026	chr1	12124571	12125380	+	0	NA	intron (NM_001281430, intron 9 of 13)	intron (NM_001281430, intron 9 of 13)	-41968	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
106501	chr18	17115221	17115500	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1789441	NR_027417	644669		NR_027417	ENSG00000290522	LOC644669	-	ankyrin repeat domain 30B pseudogene	pseudo
63777	chr14	21261701	21262000	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	7592	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
203029	chr6	163712371	163712730	+	0	NA	Intergenic	Intergenic	-41066	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
133027	chr2	111887821	111888280	+	0	NA	Intergenic	Intergenic	-3857	NM_022662	64682		NM_022662	ENSG00000153107	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
127877	chr2	45892621	45892880	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	241075	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
226712	chr9	75142151	75142780	+	0	NA	intron (NM_012383, intron 9 of 9)	intron (NM_012383, intron 9 of 9)	53951	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
4910	chr1	23838051	23839250	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-13191	NM_001166059	3155		NM_000191	ENSG00000117305	HMGCL	HL|HMGCL1	3-hydroxy-3-methylglutaryl-CoA lyase	protein-coding
80258	chr16	2219901	2220330	+	0	NA	Intergenic	Intergenic	-3373	NM_001288776	1877		NM_004424	ENSG00000167967	E4F1	E4F	E4F transcription factor 1	protein-coding
39235	chr11	57655701	57656350	+	0	NA	Intergenic	AluY|SINE|Alu	-1719	NM_001142597	10978		NM_006831	ENSG00000172409	CLP1	HEAB|hClp1	cleavage factor polyribonucleotide kinase subunit 1	protein-coding
223568	chr8	144264671	144264830	+	0	NA	exon (NM_015201, exon 5 of 16)	exon (NM_015201, exon 5 of 16)	-1703	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
238368	chrX	149927201	149927780	+	0	NA	Intergenic	Intergenic	-2083	NM_001351114	101927685		NM_001351114	ENSG00000283463	HSFX4	-	heat shock transcription factor family, X-linked member 4	protein-coding
53116	chr12	57803171	57803600	+	0	NA	TTS (NM_001172697)	TTS (NM_001172697)	12684	NM_006576	10677		NM_006576	ENSG00000135407	AVIL	ADVIL|DOC6|NPHS21|p92	advillin	protein-coding
46703	chr11	128826871	128827230	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	15419	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
150604	chr21	43360401	43360600	+	0	NA	intron (NR_131902, intron 1 of 1)	intron (NR_131902, intron 1 of 1)	1849	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
77584	chr15	85100471	85100900	+	0	NA	intron (NM_173454, intron 10 of 20)	intron (NM_173454, intron 10 of 20)	118711	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
62981	chr13	112299451	112300000	+	0	NA	Intergenic	Intergenic	-13742	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
73786	chr15	45704751	45705190	+	0	NA	promoter-TSS (NR_135680)	promoter-TSS (NR_135680)	-225	NR_135680	105370802		NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA
8231	chr1	39691171	39692750	+	0	NA	promoter-TSS (NM_001282397)	promoter-TSS (NM_001282397)	-475	NM_001282397	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
73053	chr15	40896171	40896750	+	0	NA	intron (NM_020857, intron 2 of 4)	AluJr|SINE|Alu	2010	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
63257	chr13	113948251	113948830	+	0	NA	Intergenic	MER57E1|LTR|ERV1	-19549	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
230042	chr9	127389521	127391030	+	0	NA	intron (NR_104591, intron 25 of 26)	Tigger11a|DNA|TcMar-Tigger	-6863	NM_001271711	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
79622	chr16	1102751	1103800	+	0	NA	Intergenic	CpG	-7031	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
88595	chr16	85585001	85585200	+	0	NA	Intergenic	Intergenic	-26309	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
81283	chr16	4663601	4664050	+	0	NA	intron (NM_001142291, intron 5 of 15)	intron (NM_001142291, intron 5 of 15)	-7493	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
230199	chr9	127809721	127810230	+	0	NA	intron (NR_110170, intron 12 of 14)	CpG	-6091	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
92202	chr17	7848951	7849850	+	0	NA	exon (NM_001080424, exon 11 of 22)	exon (NM_001080424, exon 11 of 22)	-5666	NM_203411	92162		NM_203411	ENSG00000167874	TMEM88	-	transmembrane protein 88	protein-coding
171343	chr3	196047901	196048100	+	0	NA	Intergenic	AluSz6|SINE|Alu	34090	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
100197	chr17	59101601	59101800	+	0	NA	intron (NR_148347, intron 1 of 22)	(AC)n|Simple_repeat|Simple_repeat	5180	NM_001353082	4591		NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
32301	chr10	102145451	102145750	+	0	NA	intron (NM_015062, intron 8 of 13)	AluY|SINE|Alu	-6576	NM_001284388	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
169562	chr3	170310201	170310430	+	0	NA	Intergenic	Intergenic	-47400	NM_001145098	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
201138	chr6	142901771	142901930	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	43326	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
88560	chr16	85542471	85542630	+	0	NA	Intergenic	Intergenic	-68859	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
168744	chr3	151156571	151156930	+	0	NA	intron (NM_053002, intron 5 of 42)	intron (NM_053002, intron 5 of 42)	46466	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
199782	chr6	125990321	125990580	+	0	NA	intron (NM_001350583, intron 1 of 12)	intron (NM_001350583, intron 1 of 12)	3910	NM_001031712	60487		NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
226441	chr9	71683851	71684250	+	0	NA	3' UTR (NM_001349784, exon 24 of 24)	3' UTR (NM_001349784, exon 24 of 24)	84463	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
50833	chr12	49108471	49109050	+	0	NA	intron (NM_001352161, intron 1 of 16)	AluSx1|SINE|Alu	2140	NM_001352166	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
84041	chr16	29571121	29571400	+	0	NA	intron (NR_135305, intron 1 of 13)	MER77B|LTR|ERVL	23832	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
127371	chr2	39368671	39369230	+	0	NA	intron (NM_003618, intron 2 of 33)	intron (NM_003618, intron 2 of 33)	68335	NM_003618	8491		NM_003618	ENSG00000011566	MAP4K3	GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding
80778	chr16	3190471	3191530	+	0	NA	intron (NM_012360, intron 2 of 2)	intron (NM_012360, intron 2 of 2)	1878	NM_012360	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
81076	chr16	4339821	4340280	+	0	NA	TTS (NM_001201479)	TTS (NM_001201479)	11271	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
166028	chr3	108477521	108477880	+	0	NA	intron (NM_014981, intron 12 of 41)	intron (NM_014981, intron 12 of 41)	51622	NM_014981	22989		NM_014981	ENSG00000144821	MYH15	-	myosin heavy chain 15	protein-coding
71509	chr14	106087971	106088130	+	0	NA	Intergenic	Intergenic	-115781	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
179378	chr4	183505601	183507050	+	0	NA	intron (NM_001291959, intron 1 of 1)	CpG	243	NM_001291959	3622		NM_001564	ENSG00000168556	ING2	ING1L|p33ING2	inhibitor of growth family member 2	protein-coding
75501	chr15	66393551	66393850	+	0	NA	intron (NM_002755, intron 1 of 10)	L2a|LINE|L2	6788	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
171227	chr3	195776451	195776550	+	0	NA	intron (NM_138297, intron 1 of 22)	intron (NM_138297, intron 1 of 22)	35429	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
32972	chr10	110499201	110500250	+	0	NA	intron (NM_004419, intron 1 of 3)	intron (NM_004419, intron 1 of 3)	1818	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
174558	chr4	40217901	40218400	+	0	NA	5' UTR (NM_001278360, exon 2 of 4)	5' UTR (NM_001278360, exon 2 of 4)	21119	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
231407	chr9	131008901	131009300	+	0	NA	promoter-TSS (NM_006059)	promoter-TSS (NM_006059)	-74	NM_006059	10319		NM_006059	ENSG00000050555	LAMC3	OCCM	laminin subunit gamma 3	protein-coding
194321	chr6	32836501	32836930	+	0	NA	intron (NM_000544, intron 3 of 11)	Tigger3a|DNA|TcMar-Tigger	2024	NM_001290043	6891		NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
7322	chr1	32652521	32652980	+	0	NA	intron (NM_005610, intron 2 of 11)	AluSx1|SINE|Alu	1392	NM_001135256	5928		NM_005610	ENSG00000162521	RBBP4	NURF55|RBAP48|lin-53	RB binding protein 4, chromatin remodeling factor	protein-coding
101409	chr17	67386371	67386650	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	9229	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
202691	chr6	158803741	158804580	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-13819	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
228692	chr9	108761871	108762030	+	0	NA	Intergenic	Intergenic	94036	NM_006686	10880		NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
57735	chr12	122893021	122893780	+	0	NA	intron (NM_024667, intron 1 of 3)	MIRb|SINE|MIR	2724	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
3341	chr1	15436271	15436600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2008	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
99884	chr17	56681251	56682030	+	0	NA	Intergenic	Intergenic	87941	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
200947	chr6	139171971	139172630	+	0	NA	intron (NM_016217, intron 2 of 3)	intron (NM_016217, intron 2 of 3)	37220	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
44434	chr11	104705351	104706650	+	0	NA	Intergenic	Intergenic	-96698	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
130949	chr2	87512171	87512330	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	42300	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
55141	chr12	98610971	98611130	+	0	NA	Intergenic	Intergenic	11415	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
51149	chr12	50132221	50133330	+	0	NA	intron (NM_147190, intron 9 of 9)	intron (NM_147190, intron 9 of 9)	20539	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
33997	chr10	124681971	124682130	+	0	NA	exon (NM_014661, exon 4 of 5)	exon (NM_014661, exon 4 of 5)	-21978	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
214790	chr7	151123521	151124830	+	0	NA	TTS (NM_001308304)	TTS (NM_001308304)	9537	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
133276	chr2	113508801	113509000	+	0	NA	Intergenic	SATR1|Satellite|Satellite	9816	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
44252	chr11	101683801	101684000	+	0	NA	Intergenic	L1PA3|LINE|L1	-99893	NM_004621	7225		NM_004621	ENSG00000137672	TRPC6	FSGS2|TRP6	transient receptor potential cation channel subfamily C member 6	protein-coding
4089	chr1	19156671	19156850	+	0	NA	intron (NM_020765, intron 41 of 105)	intron (NM_020765, intron 41 of 105)	53506	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
214461	chr7	150341451	150341750	+	0	NA	promoter-TSS (NM_002889)	promoter-TSS (NM_002889)	29	NM_002889	5919		NM_002889	ENSG00000106538	RARRES2	HP10433|TIG2	retinoic acid receptor responder 2	protein-coding
149197	chr21	23968651	23969580	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	352262	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
22206	chr1	212465321	212465580	+	0	NA	Intergenic	Intergenic	32530	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
206216	chr7	28568771	28568930	+	0	NA	intron (NM_182899, intron 3 of 9)	intron (NM_182899, intron 3 of 9)	-117283	NM_001011666	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
184534	chr5	102294851	102295150	+	0	NA	intron (NM_180991, intron 1 of 12)	intron (NM_180991, intron 1 of 12)	1284	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
168643	chr3	150227851	150228030	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-10579	NR_110168	101927992		NR_110167	ENSG00000244541	LINC01213	-	long intergenic non-protein coding RNA 1213	ncRNA
173096	chr4	6308351	6309500	+	0	NA	Intergenic	LTR12C|LTR|ERV1	39075	NM_006005	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
80941	chr16	3849251	3849880	+	0	NA	intron (NM_004380, intron 2 of 30)	AluJo|SINE|Alu	30555	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
55848	chr12	109099421	109100180	+	0	NA	intron (NM_080911, intron 3 of 6)	AluSz|SINE|Alu	1628	NM_003362	7374		NM_003362	ENSG00000076248	UNG	DGU|HIGM4|HIGM5|UDG|UNG1|UNG15|UNG2	uracil DNA glycosylase	protein-coding
197412	chr6	73522401	73522900	+	0	NA	Intergenic	AluSz|SINE|Alu	-1618	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
169475	chr3	169659851	169660330	+	0	NA	intron (NM_004991, intron 1 of 16)	intron (NM_004991, intron 1 of 16)	3622	NM_001205194	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
49830	chr12	32159701	32160250	+	0	NA	intron (NR_148725, intron 1 of 9)	MIRb|SINE|MIR	53128	NR_148725	636		NM_001714	ENSG00000151746	BICD1	BICD|bic-D 1	BICD cargo adaptor 1	protein-coding
192541	chr6	25135821	25137300	+	0	NA	intron (NR_027626, intron 2 of 6)	intron (NR_027626, intron 2 of 6)	1263	NR_002174	8418		NM_003570	ENSG00000293489	CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
48787	chr12	11758771	11759130	+	0	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	109276	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
146738	chr20	50791871	50792450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2734	NM_001010974	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
38719	chr11	46680371	46680530	+	0	NA	intron (NM_004308, intron 9 of 12)	intron (NM_004308, intron 9 of 12)	20169	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
94480	chr17	29275101	29275650	+	0	NA	intron (NM_020772, intron 2 of 3)	intron (NM_020772, intron 2 of 3)	18773	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
205706	chr7	23321551	23321650	+	0	NA	intron (NM_006547, intron 10 of 14)	L1PA3|LINE|L1	22261	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
154734	chr22	36468151	36468850	+	0	NA	intron (NM_012473, intron 3 of 3)	AluJo|SINE|Alu	13140	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
149222	chr21	25507651	25507950	+	0	NA	Intergenic	Intergenic	-54345	NR_001458	114614		NR_001458	ENSG00000234883	MIR155HG	BIC|BIC-155|MIRHG2|NCRNA00172|miPEP155	MIR155 host gene	ncRNA
238431	chrX	150899501	150900250	+	0	NA	Intergenic	Intergenic	-1059	NM_001242614	83692		NM_031462	ENSG00000102181	CD99L2	CD99B|MIC2L1	CD99 molecule like 2	protein-coding
90553	chr17	1502701	1503230	+	0	NA	intron (NM_016532, intron 7 of 11)	AluJb|SINE|Alu	-10279	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
148932	chr21	9814871	9815030	+	0	NA	intron (NR_038377, intron 1 of 5)	SST1|Satellite|centr	6111	NR_038377	441058		NM_001004347		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
132945	chr2	111454221	111455250	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	40426	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
39313	chr11	58900701	58900900	+	0	NA	Intergenic	Intergenic	-4598	NM_001354699	92292		NM_080661	ENSG00000166840	GLYATL1	GATF-C|GNAT	glycine-N-acyltransferase like 1	protein-coding
79275	chr16	528901	529800	+	0	NA	intron (NM_005632, intron 1 of 13)	intron (NM_005632, intron 1 of 13)	1638	NM_005632	6650		NM_005632	ENSG00000103326	CAPN15	OGIN|SOLH	calpain 15	protein-coding
187180	chr5	140645771	140646330	+	0	NA	TTS (NM_001300982)	TTS (NM_001300982)	1580	NM_002488	4695		NM_002488	ENSG00000131495	NDUFA2	B8|CD14|CIB8|MC1DN13	NADH:ubiquinone oxidoreductase subunit A2	protein-coding
220774	chr8	102414371	102414900	+	0	NA	intron (NR_168428, intron 1 of 4)	AluSx|SINE|Alu	-1935	NM_015902	51366		NM_015902	ENSG00000104517	UBR5	DD5|EDD|EDD1|HYD	ubiquitin protein ligase E3 component n-recognin 5	protein-coding
119863	chr19	41440851	41441230	+	0	NA	Intergenic	L2a|LINE|L2	-1128	NM_001167871	55101		NM_018035	ENSG00000105341	DMAC2	ATP5SL	distal membrane arm assembly component 2	protein-coding
103450	chr17	78278151	78278650	+	0	NA	promoter-TSS (NR_073178)	promoter-TSS (NR_073178)	92	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
8120	chr1	39220451	39220750	+	0	NA	intron (NM_012090, intron 1 of 92)	AluSz|SINE|Alu	136433	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
153254	chr22	24094101	24094530	+	0	NA	intron (NM_012295, intron 24 of 36)	intron (NM_012295, intron 24 of 36)	82945	NM_001199281	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
23349	chr1	228144771	228144930	+	0	NA	intron (NM_001159391, intron 1 of 7)	intron (NM_001159391, intron 1 of 7)	154	NM_001159391	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
198126	chr6	90411151	90412150	+	0	NA	Intergenic	Intergenic	98908	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
6766	chr1	30745251	30745730	+	0	NA	intron (NM_006762, intron 1 of 7)	intron (NM_006762, intron 1 of 7)	-6258	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
125832	chr2	24357651	24358500	+	0	NA	intron (NM_147152, intron 1 of 29)	AluSx3|SINE|Alu	2461	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
107095	chr18	35046501	35047250	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	5462	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
141233	chr2	239602121	239602900	+	0	NA	Intergenic	Intergenic	-160350	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
129755	chr2	70994321	70996050	+	0	NA	promoter-TSS (NM_144582)	promoter-TSS (NM_144582)	-312	NM_144582	113419		NM_144582	ENSG00000144043	TEX261	TEG-261	testis expressed 261	protein-coding
156436	chr22	41234971	41235550	+	0	NA	exon (NM_138481, exon 5 of 6)	exon (NM_138481, exon 5 of 6)	5671	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
36244	chr11	3756401	3756600	+	0	NA	intron (NM_001365128, intron 10 of 32)	AluSx|SINE|Alu	41046	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
144185	chr20	34129171	34130000	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-17342	NM_001316364	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
173068	chr4	6176701	6176900	+	0	NA	intron (NM_144720, intron 1 of 12)	AluJb|SINE|Alu	17819	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
52967	chr12	57472621	57473130	+	0	NA	TTS (NM_005269)	TTS (NM_005269)	4992	NM_001319851	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
74678	chr15	62058421	62058680	+	0	NA	intron (NM_017684, intron 1 of 82)	MER2|DNA|TcMar-Tigger	1897	NM_017684	54832		NM_017684	ENSG00000129003	VPS13C	BLTP5C|PARK23	vacuolar protein sorting 13 homolog C	protein-coding
116817	chr19	18556201	18556500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1412	NM_001171948	79036		NM_024069	ENSG00000105700	KXD1	BORCS4|C10orf50|C19orf50|KXDL|MST096|MSTP096	KxDL motif containing 1	protein-coding
156897	chr22	42183351	42184150	+	0	NA	intron (NM_005650, intron 2 of 5)	intron (NM_005650, intron 2 of 5)	-39196	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
100222	chr17	59220281	59221550	+	0	NA	intron (NM_001165993, intron 1 of 9)	intron (NM_001165993, intron 1 of 9)	404	NM_182569	284161		NM_182569	ENSG00000153982	GDPD1	GDE4	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding
2207	chr1	8680971	8681400	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	136455	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
130588	chr2	85855071	85855330	+	0	NA	intron (NM_001354224, intron 3 of 7)	THE1B|LTR|ERVL-MaLR	-1025	NM_001354247	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
217772	chr8	33319901	33320180	+	0	NA	Intergenic	Intergenic	153106	NM_032664	84750		NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
47423	chr12	3078551	3078650	+	0	NA	intron (NM_001168320, intron 1 of 7)	intron (NM_001168320, intron 1 of 7)	1221	NM_006675	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
220673	chr8	101166201	101166600	+	0	NA	TTS (NR_164368)	TTS (NR_164368)	3839	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
113879	chr19	10668021	10669750	+	0	NA	intron (NM_153464, intron 1 of 17)	AluSc8|SINE|Alu	14539	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
74367	chr15	58749201	58750730	+	0	NA	promoter-TSS (NM_001110)	promoter-TSS (NM_001110)	-258	NM_001320570	102		NM_001110	ENSG00000137845	ADAM10	AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz	ADAM metallopeptidase domain 10	protein-coding
46226	chr11	124195171	124195330	+	0	NA	Intergenic	Intergenic	12031	NM_001355213	26497		NM_001355213	ENSG00000197309	OR10D3	HTPCRX09|OR10D3P	olfactory receptor family 10 subfamily D member 3	protein-coding
221576	chr8	125219301	125219950	+	0	NA	intron (NR_146191, intron 6 of 8)	intron (NR_146191, intron 6 of 8)	127765	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
165559	chr3	101511621	101511880	+	0	NA	intron (NM_001077203, intron 1 of 22)	Charlie16a|DNA|hAT-Charlie	1462	NM_001282802	57337		NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
171192	chr3	195690751	195692100	+	0	NA	intron (NR_122105, intron 2 of 4)	MER5A|DNA|hAT-Charlie	2927	NR_122105	440993		NM_001013714		MIR570HG	LINC00969	MIR570 host gene	ncRNA
47375	chr12	2616571	2617000	+	0	NA	intron (NM_001129832, intron 30 of 47).2	intron (NM_001129832, intron 30 of 47).2	55435	NR_046579	100874235		NR_046579	ENSG00000256271	CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
127658	chr2	43160651	43161030	+	0	NA	Intergenic	Intergenic	-58395	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
147883	chr20	62864271	62865180	+	0	NA	Intergenic	AluJr|SINE|Alu	-2903	NM_001301726	10732		NM_006602	ENSG00000101190	TCFL5	CHA|E2BP-1|Figlb|SOSF1|bHLHe82	transcription factor like 5	protein-coding
67089	chr14	68262001	68262200	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	366687	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
179651	chr4	189364151	189364250	+	0	NA	Intergenic	CpG	-295406	NR_121679	101928971		NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
154633	chr22	36322751	36322850	+	0	NA	intron (NM_002473, intron 5 of 40)	intron (NM_002473, intron 5 of 40)	-35893	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
83529	chr16	27491851	27492550	+	0	NA	intron (NM_001520, intron 19 of 36)	intron (NM_001520, intron 19 of 36)	-38807	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
17776	chr1	159089101	159089530	+	0	NA	Intergenic	MIRb|SINE|MIR	-12414	NM_001348247	9447		NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding
232195	chr9	134320471	134321130	+	0	NA	Intergenic	Intergenic	-5655	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
13574	chr1	116128201	116129180	+	0	NA	intron (NM_152367, intron 6 of 6)	intron (NM_152367, intron 6 of 6)	16935	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
87507	chr16	71848971	71849330	+	0	NA	intron (NM_001137675, intron 2 of 2)	AluSq|SINE|Alu	3174	NM_001137675	342371		NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1 like	protein-coding
230924	chr9	129339051	129339350	+	0	NA	intron (NR_120686, intron 2 of 3)	intron (NR_120686, intron 2 of 3)	2277	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
106386	chr18	13374921	13375650	+	0	NA	intron (NM_001378098, intron 1 of 5)	intron (NM_001378098, intron 1 of 5)	36682	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
66479	chr14	61594451	61595880	+	0	NA	intron (NR_039985, intron 1 of 2)	MER112|DNA|hAT-Charlie	-24512	NR_110416	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
127908	chr2	46302171	46302330	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	4843	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
12780	chr1	109687571	109688330	+	0	NA	intron (NM_146421, intron 1 of 6)	CpG	133	NM_146421	2944		NM_000561	ENSG00000134184	GSTM1	GST1|GSTM1-1|GSTM1a-1a|GSTM1b-1b|GTH4|GTM1|H-B|MU|MU-1	glutathione S-transferase mu 1	protein-coding
171049	chr3	195256251	195256580	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	-8495	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
179901	chr5	678701	679100	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	14452	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
34282	chr10	131913621	131914130	+	0	NA	intron (NM_001291310, intron 3 of 9)	LTR85a|LTR|Gypsy?	12867	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
185627	chr5	131516021	131516450	+	0	NA	intron (NM_016340, intron 7 of 27)	AluSz|SINE|Alu	118994	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
76694	chr15	75748851	75749750	+	0	NA	Intergenic	Intergenic	-9223	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
149577	chr21	33242751	33243350	+	0	NA	intron (NM_001385055, intron 2 of 9)	AluSx1|SINE|Alu	13112	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
94381	chr17	28940071	28940700	+	0	NA	intron (NM_020889, intron 2 of 8)	intron (NM_020889, intron 2 of 8)	11133	NM_020889	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
90655	chr17	1678221	1678500	+	0	NA	intron (NM_006445, intron 13 of 42)	AluSq2|SINE|Alu	6507	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
109859	chr19	1229421	1230030	+	0	NA	3' UTR (NM_152769, exon 9 of 9)	3' UTR (NM_152769, exon 9 of 9)	8280	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
64751	chr14	34555301	34557350	+	0	NA	promoter-TSS (NR_004400).8	promoter-TSS (NR_004400).8	64	NR_004421	6060		NR_004421	ENSG00000207389	RNU1-4	HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F	RNA, U1 small nuclear 4	snRNA
87120	chr16	68764721	68765200	+	0	NA	intron (NM_004360, intron 2 of 15)	Tigger19a|DNA|TcMar-Tigger	27668	NM_001317185	999		NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
16847	chr1	155690351	155690450	+	0	NA	intron (NM_033657, intron 1 of 12)	AluJb|SINE|Alu	1306	NM_033657	7818		NM_004632	ENSG00000132676	DAP3	DAP-3|MRP-S29|MRPS29|S29mt|bMRP-10|mS29	death associated protein 3	protein-coding
223092	chr8	143423821	143424280	+	0	NA	Intergenic	Intergenic	6371	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
38757	chr11	47156301	47156500	+	0	NA	intron (NM_001003676, intron 5 of 7)	intron (NM_001003676, intron 5 of 7)	20479	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
57008	chr12	120578701	120579530	+	0	NA	TTS (NM_198202)	TTS (NM_198202)	2283	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
178696	chr4	152541871	152542030	+	0	NA	Intergenic	AluJb|SINE|Alu	5522	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
126852	chr2	31837371	31837630	+	0	NA	Intergenic	Intergenic	-33520	NR_146994	105374449		NR_146994	ENSG00000223647	LINC01946	-	long intergenic non-protein coding RNA 1946	ncRNA
212076	chr7	115020321	115020780	+	0	NA	TTS (NM_001166345)	TTS (NM_001166345)	-58408	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
179219	chr4	173521651	173521950	+	0	NA	Intergenic	Intergenic	-2656	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
135102	chr2	157388421	157389230	+	0	NA	Intergenic	L1PA14|LINE|L1	-8316	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
155456	chr22	38476351	38476450	+	0	NA	intron (NM_006855, intron 2 of 4)	AluY|SINE|Alu	8304	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
199734	chr6	125770821	125771080	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-10165	NM_001199619	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
163043	chr3	49870871	49871030	+	0	NA	Intergenic	Intergenic	-1044	NM_001320147	79012		NM_024046	ENSG00000164076	CAMKV	1G5|VACAMKL	CaM kinase like vesicle associated	protein-coding
223149	chr8	143520301	143520900	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	-14352	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
20203	chr1	193120251	193120350	+	0	NA	Intergenic	Intergenic	-1731	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
230579	chr9	128555471	128555630	+	0	NA	intron (NM_001375312, intron 2 of 57)	intron (NM_001375312, intron 2 of 57)	2963	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
93464	chr17	18784051	18785030	+	0	NA	intron (NM_001316919, intron 1 of 6)	AluSc|SINE|Alu	3226	NM_001316919	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
100577	chr17	63004871	63005100	+	0	NA	intron (NM_025185, intron 1 of 25)	intron (NM_025185, intron 1 of 25)	38750	NM_025185	26115		NM_015623	ENSG00000170921	TANC2	IDDALDS|ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
140859	chr2	237436071	237436230	+	0	NA	Intergenic	Intergenic	-21943	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
123999	chr19	55454571	55455330	+	0	NA	intron (NM_024710, intron 5 of 5)	intron (NM_024710, intron 5 of 5)	6692	NM_001136201	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
213888	chr7	142445021	142445330	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-29352	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
71065	chr14	104825051	104825150	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	3899	NR_024396	196872		NM_152646	ENSG00000258701	VESTAR	LINC00638	VEGFC mRNA stability associated lncRNA	ncRNA
21398	chr1	205282571	205283050	+	0	NA	Intergenic	AluJo|SINE|Alu	25613	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
32168	chr10	101564501	101564700	+	0	NA	Intergenic	Intergenic	23657	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
152648	chr22	21549471	21550100	+	0	NA	exon (NM_001128633, exon 1 of 1).2	exon (NM_001128633, exon 1 of 1).2	338	NM_001256355	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
166539	chr3	114863601	114864050	+	0	NA	intron (NM_015642, intron 3 of 9)	intron (NM_015642, intron 3 of 9)	-9208	NR_126422	104413890		NR_126422	ENSG00000239946	ZBTB20-AS3	-	ZBTB20 antisense RNA 3	ncRNA
182917	chr5	70514571	70514830	+	0	NA	intron (NR_034021, intron 7 of 10)	AluY|SINE|Alu	-13797	NR_033968	100049076		NR_033968		GUSBP17	GUSBP9	GUSB pseudogene 17	pseudo
96983	chr17	42269171	42270200	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	6706	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
178940	chr4	158945621	158945880	+	0	NA	intron (NM_152543, intron 3 of 4)	intron (NM_152543, intron 3 of 4)	89479	NM_152543	152940		NM_152543	ENSG00000164123	SPMIP2	C4orf45	sperm microtubule inner protein 2	protein-coding
32400	chr10	102436821	102437780	+	0	NA	TTS (NR_030169)	TTS (NR_030169)	788	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B|mir-146b	microRNA 146b	ncRNA
119470	chr19	40437451	40437550	+	0	NA	Intergenic	AluSp|SINE|Alu	5098	NM_013368	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
191622	chr6	12233571	12234350	+	0	NA	Intergenic	Intergenic	-56401	NM_001955	1906		NM_001955	ENSG00000078401	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
52836	chr12	57076421	57076680	+	0	NA	intron (NM_015257, intron 1 of 7)	AluSx3|SINE|Alu	2241	NM_001130963	23306		NM_015257	ENSG00000166881	NEMP1	TMEM194|TMEM194A	nuclear envelope integral membrane protein 1	protein-coding
53356	chr12	64653701	64653900	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJb|SINE|Alu	-31195	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
36006	chr11	2896551	2897000	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-2916	NM_183233	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
63219	chr13	113854201	113855100	+	0	NA	intron (NM_000820, intron 2 of 14)	intron (NM_000820, intron 2 of 14)	9426	NM_000820	2621		NM_000820	ENSG00000183087	GAS6	AXLLG|AXSF	growth arrest specific 6	protein-coding
71090	chr14	104870721	104871380	+	0	NA	intron (NM_001112726, intron 2 of 18)	intron (NM_001112726, intron 2 of 18)	5736	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
184582	chr5	102858551	102859250	+	0	NA	intron (NM_001364582, intron 1 of 24)	Tigger3b|DNA|TcMar-Tigger	-6923	NM_138821	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
161396	chr3	41213221	41213630	+	0	NA	intron (NM_001098210, intron 1 of 15)	L2a|LINE|L2	13920	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
199633	chr6	121319101	121319430	+	0	NA	intron (NR_104452, intron 2 of 35)	intron (NR_104452, intron 2 of 35)	15215	NM_152730	221322		NM_152730	ENSG00000146350	TBC1D32	BROMI|C6orf170|C6orf171	TBC1 domain family member 32	protein-coding
8215	chr1	39677101	39677500	+	0	NA	Intergenic	Intergenic	-5262	NM_032526	84618		NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
99610	chr17	50549471	50549630	+	0	NA	intron (NM_022827, intron 7 of 16)	intron (NM_022827, intron 7 of 16)	2376	NM_022827	64847		NM_022827	ENSG00000006282	SPATA20	HEL-S-98|SSP411|Tisp78	spermatogenesis associated 20	protein-coding
215128	chr7	155374101	155374630	+	0	NA	Intergenic	CpG	-6432	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
55762	chr12	108558651	108559400	+	0	NA	intron (NM_014706, intron 1 of 18)	AluY|SINE|Alu	2148	NM_014706	9733		NM_014706	ENSG00000075856	SART3	DSAP1|P100|RP11-13G14|TIP110|p110|p110(nrb)	spliceosome associated factor 3, U4/U6 recycling protein	protein-coding
13713	chr1	116771621	116771880	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	17320	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
144357	chr20	35055621	35056280	+	0	NA	intron (NM_199368, intron 4 of 18)	intron (NM_199368, intron 4 of 18)	36857	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
221168	chr8	120063851	120063950	+	0	NA	Intergenic	Intergenic	-61202	NM_001384947	7373		NM_021110	ENSG00000187955	COL14A1	UND	collagen type XIV alpha 1 chain	protein-coding
32861	chr10	110073851	110073950	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-65519	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
100320	chr17	59837171	59838500	+	0	NA	intron (NM_001329395, intron 11 of 12)	intron (NM_001329395, intron 11 of 12)	-3431	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
154782	chr22	36703171	36703700	+	0	NA	promoter-TSS (NR_134623)	promoter-TSS (NR_134623)	317	NR_166440	10369		NM_006078	ENSG00000166862	CACNG2	MRD10	calcium voltage-gated channel auxiliary subunit gamma 2	protein-coding
232575	chr9	136373551	136374130	+	0	NA	promoter-TSS (NM_052814)	promoter-TSS (NM_052814)	-171	NM_052813	64170		NM_022352	ENSG00000187796	CARD9	CANDF2|IMD103|hCARD9	caspase recruitment domain family member 9	protein-coding
148984	chr21	14029401	14029800	+	0	NA	Intergenic	MER92B|LTR|ERV1	-49156	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
142855	chr20	17617401	17618600	+	0	NA	intron (NM_004587, intron 20 of 24)	intron (NM_004587, intron 20 of 24)	47925	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
88693	chr16	85810551	85811130	+	0	NA	Intergenic	Intergenic	11145	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
22552	chr1	222476451	222476950	+	0	NA	Intergenic	Intergenic	71404	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
53405	chr12	64726951	64727250	+	0	NA	intron (NM_002076, intron 10 of 13)	L1MB8|LINE|L1	32306	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
1354	chr1	2497121	2497480	+	0	NA	intron (NM_001303013, intron 15 of 21)	intron (NM_001303013, intron 15 of 21)	20985	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
123124	chr19	51777871	51778100	+	0	NA	Intergenic	Intergenic	14596	NM_001462	2358		NM_001462	ENSG00000171049	FPR2	ALX|ALXR|FMLP-R-II|FMLPX|FPR2A|FPRH1|FPRH2|FPRL1|HM63|LXA4R	formyl peptide receptor 2	protein-coding
53891	chr12	70645751	70646050	+	0	NA	intron (NR_073474, intron 9 of 10)	intron (NR_073474, intron 9 of 10)	-8471	NM_001109754	5787		NM_002837	ENSG00000127329	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase receptor type B	protein-coding
21156	chr1	203695421	203695680	+	0	NA	intron (NM_001365783, intron 2 of 20)	intron (NM_001365783, intron 2 of 20)	-34031	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
74807	chr15	63445921	63447180	+	0	NA	Intergenic	Intergenic	56320	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
44506	chr11	106087601	106088090	+	0	NA	intron (NM_015423, intron 2 of 5)	intron (NM_015423, intron 2 of 5)	-10107	NM_001330359	143879		NM_152433	ENSG00000182359	KBTBD3	BKLHD3	kelch repeat and BTB domain containing 3	protein-coding
122413	chr19	49447371	49448150	+	0	NA	intron (NM_017916, intron 5 of 8)	intron (NM_017916, intron 5 of 8)	4054	NM_017916	55011		NM_017916	ENSG00000104872	PIH1D1	DNAAF14|MOT48|NOP17|Pih1	PIH1 domain containing 1	protein-coding
161368	chr3	40504871	40505030	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-1089	NM_001256167	253639		NM_175888	ENSG00000177842	ZNF620	-	zinc finger protein 620	protein-coding
125884	chr2	24642071	24642430	+	0	NA	intron (NM_147233, intron 1 of 20)	L1M4a1|LINE|L1	57773	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
141914	chr20	1005521	1005900	+	0	NA	Intergenic	Intergenic	-3399	NM_001040007	343637		NM_001029871	ENSG00000101282	RSPO4	C20orf182|CRISTIN4	R-spondin 4	protein-coding
196885	chr6	52231421	52231990	+	0	NA	Intergenic	Intergenic	12795	NM_052872	112744		NM_052872	ENSG00000112116	IL17F	CANDF6|IL-17F|IL17A|ML-1|ML1	interleukin 17F	protein-coding
72639	chr15	38486871	38487630	+	0	NA	TTS (NM_001306086)	TTS (NM_001306086)	33123	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
221196	chr8	120742071	120743380	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-18528	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
53198	chr12	62259021	62261600	+	0	NA	promoter-TSS (NM_006313)	promoter-TSS (NM_006313)	-30	NM_001351162	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
171572	chr3	196969611	196971050	+	0	NA	Intergenic	AluJb|SINE|Alu	-1497	NM_025163	80235		NM_025163	ENSG00000119227	PIGZ	GPI-MT-IV|PIG-Z|SMP3	phosphatidylinositol glycan anchor biosynthesis class Z	protein-coding
68033	chr14	75176501	75177500	+	0	NA	promoter-TSS (NM_006827)	promoter-TSS (NM_006827)	-388	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
121690	chr19	47537821	47538080	+	0	NA	intron (NM_001277075, intron 9 of 16)	intron (NM_001277075, intron 9 of 16)	-22887	NR_038456	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
2028	chr1	7672971	7673130	+	0	NA	intron (NM_001349621, intron 2 of 14)	intron (NM_001349621, intron 2 of 14)	3285	NM_001349617	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
234820	chrX	24156001	24156200	+	0	NA	intron (NM_001330327, intron 3 of 10)	AluSx1|SINE|Alu	6371	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
22044	chr1	210448151	210448530	+	0	NA	intron (NM_018194, intron 7 of 11).2	AluSx1|SINE|Alu	118974	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
78237	chr15	90666921	90667180	+	0	NA	intron (NR_120372, intron 2 of 3)	intron (NR_120372, intron 2 of 3)	6816	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
149320	chr21	29027201	29027680	+	0	NA	intron (NM_001032410, intron 2 of 18)	intron (NM_001032410, intron 2 of 18)	2772	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
121946	chr19	48467021	48467480	+	0	NA	TTS (NM_013348)	TTS (NM_013348)	-1958	NM_017457	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
3627	chr1	16378401	16379000	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	11458	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
135474	chr2	161386451	161386550	+	0	NA	intron (NM_005805, intron 8 of 11)	intron (NM_005805, intron 8 of 11)	-29797	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
9690	chr1	53013271	53013430	+	0	NA	intron (NM_001193599, intron 10 of 14)	AluSx3|SINE|Alu	-1587	NM_001007099	6342		NM_002979	ENSG00000116171	SCP2	NLTP|NSL-TP|SCOX|SCP-2|SCP-CHI|SCP-X|SCPX	sterol carrier protein 2	protein-coding
232462	chr9	136196001	136196400	+	0	NA	TTS (NM_001363746)	TTS (NM_001363746)	5474	NM_001363746	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
12875	chr1	110202751	110203830	+	0	NA	Intergenic	L2b|LINE|L2	6697	NR_046546	100873974		NR_046546		KCNC4-DT	KCNC4-AS1|LINC02586	KCNC4 divergent transcript	ncRNA
91152	chr17	3763121	3763980	+	0	NA	intron (NM_002208, intron 3 of 30)	MIRc|SINE|MIR	37638	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
142961	chr20	19692621	19692880	+	0	NA	intron (NM_020689, intron 12 of 16)	intron (NM_020689, intron 12 of 16)	-65508	NM_001378238	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
92556	chr17	8964651	8965100	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	832	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
59385	chr13	24924401	24924600	+	0	NA	Intergenic	Intergenic	-1639	NR_047595	55835		NM_018451	ENSG00000151849	CENPJ	BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4	centromere protein J	protein-coding
152960	chr22	22983201	22983400	+	0	NA	Intergenic	Intergenic	-87219	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
163349	chr3	50433921	50434350	+	0	NA	intron (NM_006030, intron 3 of 37)	intron (NM_006030, intron 3 of 37)	68772	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
124291	chr19	57849611	57851030	+	0	NA	intron (NM_001204817, intron 1 of 2)	LTR8|LTR|ERV1	461	NM_001204817	84914		NM_017961	ENSG00000198466	ZNF587	ZF6	zinc finger protein 587	protein-coding
89266	chr16	88664821	88665150	+	0	NA	intron (NR_024399, intron 1 of 3)	AluJr|SINE|Alu	1612	NR_024399	197187		NM_144986	ENSG00000260630	SNAI3-AS1	-	SNAI3 antisense RNA 1	ncRNA
171465	chr3	196409501	196409900	+	0	NA	intron (NM_015562, intron 1 of 10)	intron (NM_015562, intron 1 of 10)	-21685	NR_046745	100874034		NR_046745		UBXN7-AS1	-	UBXN7 antisense RNA 1	ncRNA
178668	chr4	152501871	152502330	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	-12684	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
202874	chr6	159958571	159958730	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-10432	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
105862	chr18	3067371	3067850	+	0	NA	intron (NM_019856, intron 36 of 36)	intron (NM_019856, intron 36 of 36)	-54466	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
35777	chr11	2165121	2165530	+	0	NA	exon (NM_199293, exon 13 of 14)	exon (NM_199293, exon 13 of 14)	-4116	NM_001291897	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
173747	chr4	16216421	16216730	+	0	NA	intron (NM_153365, intron 1 of 13)	L2c|LINE|L2	9896	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
159321	chr3	13018501	13018700	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-31499	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
145758	chr20	45301001	45301280	+	0	NA	exon (NM_003833, exon 6 of 11)	exon (NM_003833, exon 6 of 11)	-5700	NM_014276	11317		NM_014276	ENSG00000124232	RBPJL	RBPL|RBPSUHL|SUHL	recombination signal binding protein for immunoglobulin kappa J region like	protein-coding
21028	chr1	202999051	202999650	+	0	NA	intron (NR_036557, intron 1 of 4)	intron (NR_036557, intron 1 of 4)	7915	NR_036557	100506747		NR_036557		MGAT4FP	-	MGAT4 family member F, pseudogene	pseudo
176133	chr4	83111421	83111700	+	0	NA	intron (NM_016619, intron 1 of 4)	intron (NM_016619, intron 1 of 4)	-1671	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
168407	chr3	142267001	142267400	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-41615	NM_001039547	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
39153	chr11	57310801	57311730	+	0	NA	intron (NM_033396, intron 5 of 11)	intron (NM_033396, intron 5 of 11)	13687	NM_033396	85456		NM_033396	ENSG00000149115	TNKS1BP1	CNOT12|TAB182	tankyrase 1 binding protein 1	protein-coding
120299	chr19	43471151	43471600	+	0	NA	Intergenic	Intergenic	-5767	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
97960	chr17	45238951	45239050	+	0	NA	exon (NM_005892, exon 11 of 27)	exon (NM_005892, exon 11 of 27)	-8925	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
216757	chr8	22471501	22471900	+	0	NA	intron (NM_005605, intron 1 of 13)	Tigger3|DNA|TcMar-Tigger	30622	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
20726	chr1	200885271	200886280	+	0	NA	Intergenic	Intergenic	-5756	NM_018265	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
107478	chr18	47149951	47151530	+	0	NA	promoter-TSS (NM_001318765)	promoter-TSS (NM_001318765)	-240	NM_032124	84064		NM_032124	ENSG00000167220	HDHD2	3110052N05Rik|HEL-S-301	haloacid dehalogenase like hydrolase domain containing 2	protein-coding
206348	chr7	30349401	30349600	+	0	NA	intron (NM_147128, intron 2 of 4)	MIRb|SINE|MIR	-20550	NR_002186	222161		NM_152747		DKFZP586I1420	-	uncharacterized protein DKFZp586I1420	pseudo
112942	chr19	7705521	7706580	+	0	NA	Intergenic	Intergenic	-3904	NM_002002	2208		NM_002002	ENSG00000104921	FCER2	BLAST-2|CD23|CD23A|CLEC4J|FCE2|FCErII|IGEBF	Fc epsilon receptor II	protein-coding
189745	chr5	176596571	176597850	+	0	NA	exon (NM_052899, exon 2 of 2)	exon (NM_052899, exon 2 of 2)	12946	NM_052899	114787		NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
1884	chr1	6433551	6434050	+	0	NA	intron (NM_031475, intron 2 of 12)	L2a|LINE|L2	-3904	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
169066	chr3	153291021	153291400	+	0	NA	Intergenic	Intergenic	128984	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
235426	chrX	45799471	45800030	+	0	NA	Intergenic	Intergenic	51740	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
58591	chr12	132463401	132464000	+	0	NA	Intergenic	(CATCAC)n|Simple_repeat|Simple_repeat	-26451	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
217147	chr8	26043571	26043730	+	0	NA	intron (NM_022659, intron 1 of 15)	CpG	1763	NM_022659	64641		NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	EBF transcription factor 2	protein-coding
3675	chr1	16493851	16494150	+	0	NA	Intergenic	MIRb|SINE|MIR	-1299	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
14950	chr1	147671671	147671830	+	0	NA	Intergenic	Intergenic	-1226	NR_136635	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
86539	chr16	67177771	67178680	+	0	NA	exon (NM_001369682, exon 6 of 8)	exon (NM_001369682, exon 6 of 8)	4372	NM_001276311	8996		NM_003946	ENSG00000140939	NOL3	ARC|FCM|MYOCL1|MYP|NOP|NOP30	nucleolar protein 3	protein-coding
200453	chr6	135090171	135090530	+	0	NA	Intergenic	Intergenic	-35528	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
28332	chr10	46555721	46556080	+	0	NA	intron (NM_001385298, intron 1 of 5)	intron (NM_001385298, intron 1 of 5)	516	NM_014696	9721		NM_014696	ENSG00000204175	GPRIN2	GRIN2|KIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding
231643	chr9	131621401	131622330	+	0	NA	exon (NM_001377937, exon 10 of 23)	exon (NM_001377937, exon 10 of 23)	29538	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
71320	chr14	105395671	105395830	+	0	NA	3' UTR (NM_015197, exon 24 of 24)	3' UTR (NM_015197, exon 24 of 24)	-2788	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
97995	chr17	45293351	45293850	+	0	NA	intron (NM_003954, intron 1 of 15)	intron (NM_003954, intron 1 of 15)	23420	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
35257	chr11	860021	860280	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	15704	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
108644	chr18	76498101	76498300	+	0	NA	TTS (NR_164145)	TTS (NR_164145)	2861	NR_164145	400658		NM_207460	ENSG00000275763	ZNF516-DT	C18orf65	ZNF516 divergent transcript	ncRNA
54045	chr12	75816701	75817150	+	0	NA	Intergenic	L1MC4|LINE|L1	214851	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
159827	chr3	16462251	16463030	+	0	NA	intron (NM_015150, intron 2 of 9)	MLT1D|LTR|ERVL-MaLR	51059	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
86768	chr16	67672571	67673230	+	0	NA	Intergenic	Intergenic	6086	NM_001012984	388284		NM_001012984	ENSG00000159761	C16orf86	-	chromosome 16 open reading frame 86	protein-coding
102826	chr17	76462701	76463280	+	0	NA	intron (NM_001166579, intron 3 of 6)	intron (NM_001166579, intron 3 of 6)	-4613	NM_001088	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
195131	chr6	35675421	35675950	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	-10896	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
43236	chr11	75476971	75477130	+	0	NA	intron (NM_030792, intron 3 of 16)	intron (NM_030792, intron 3 of 16)	-24723	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
227925	chr9	94260351	94260780	+	0	NA	intron (NM_194320, intron 1 of 4)	intron (NM_194320, intron 1 of 4)	-1254	NR_160773	158257		NR_046163	ENSG00000230262	LINC02603	MIRLET7DHG	long intergenic non-protein coding RNA 2603	ncRNA
230546	chr9	128400101	128400500	+	0	NA	intron (NR_031672, intron 2 of 2).4	intron (NR_031672, intron 2 of 2).4	-7586	NR_029837	407003		NR_029837	ENSG00000284185	MIR219A2	MIR219-2|MIRN219-2|hsa-mir-219a-2|mir-219a-2	microRNA 219a-2	ncRNA
19015	chr1	169628101	169628500	+	0	NA	intron (NM_003005, intron 1 of 16)	intron (NM_003005, intron 1 of 16)	1824	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
126780	chr2	30261171	30261330	+	0	NA	Intergenic	L1M4|LINE|L1	29716	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
129583	chr2	70068501	70069750	+	0	NA	intron (NR_033872, intron 4 of 10)	intron (NR_033872, intron 4 of 10)	17890	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
223176	chr8	143555421	143555880	+	0	NA	intron (NM_001166237, intron 2 of 13).2	intron (NM_001166237, intron 2 of 13).2	2263	NM_001166237	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
58262	chr12	128817551	128818530	+	0	NA	intron (NM_145648, intron 1 of 7)	intron (NM_145648, intron 1 of 7)	5918	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
188474	chr5	154759171	154759950	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	2406	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
85145	chr16	46388641	46389300	+	0	NA	Intergenic	Intergenic	180127	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
123670	chr19	54915871	54916230	+	0	NA	Intergenic	MER51D|LTR|ERV1	9902	NM_001242356	9437		NM_004829	ENSG00000189430	NCR1	CD335|LY94|NK-p46|NKP46	natural cytotoxicity triggering receptor 1	protein-coding
225300	chr9	34555571	34556080	+	0	NA	intron (NM_147164, intron 7 of 9)	intron (NM_147164, intron 7 of 9)	-12187	NR_024369	415056		NR_024369	ENSG00000237159	CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
173592	chr4	10459521	10459780	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2224	NM_001375817	85460		NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
90722	chr17	1908851	1909030	+	0	NA	Intergenic	Intergenic	78935	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
87731	chr16	75116601	75116800	+	0	NA	promoter-TSS (NM_194436)	promoter-TSS (NM_194436)	72	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
98336	chr17	46277951	46278050	+	0	NA	intron (NM_001103154, intron 4 of 4)	AluSx|SINE|Alu	-17131	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
10050	chr1	58648321	58649200	+	0	NA	Intergenic	HAL1|LINE|L1	51302	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
237775	chrX	129772651	129773230	+	0	NA	Intergenic	Intergenic	-7009	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
212049	chr7	114966421	114966680	+	0	NA	intron (NM_199072, intron 3 of 4)	intron (NM_199072, intron 3 of 4)	44396	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
57173	chr12	121425301	121425850	+	0	NA	Intergenic	Intergenic	18777	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
175206	chr4	56654821	56655440	+	0	NA	intron (NM_001145460, intron 3 of 4)	intron (NM_001145460, intron 3 of 4)	1392	NM_139211	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
117997	chr19	33796671	33798000	+	0	NA	intron (NM_001129995, intron 1 of 6)	CpG-14243	465	NM_001129994	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
157917	chr22	49777071	49777250	+	0	NA	exon (NM_001349942, exon 10 of 13)	exon (NM_001349942, exon 10 of 13)	47171	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
187648	chr5	143031251	143031350	+	0	NA	intron (NR_146198, intron 12 of 22)	L2|LINE|L2	-161200	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
146292	chr20	49134121	49134380	+	0	NA	intron (NM_001322927, intron 4 of 11)	AluSp|SINE|Alu	54084	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
50945	chr12	49388821	49389430	+	0	NA	promoter-TSS (NR_033267)	promoter-TSS (NR_033267)	-49	NR_033267	100335030		NR_033267		LOC100335030	-	FGFR1 oncogene partner 2 pseudogene	pseudo
191400	chr6	8101651	8102900	+	0	NA	intron (NM_004280, intron 1 of 3)	CpG	273	NM_004280	9521		NM_004280	ENSG00000124802	EEF1E1	AIMP3|P18	eukaryotic translation elongation factor 1 epsilon 1	protein-coding
108743	chr18	77107201	77107530	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	25418	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
65997	chr14	58202071	58202430	+	0	NA	intron (NM_018477, intron 1 of 12)	intron (NM_018477, intron 1 of 12)	2101	NM_018477	55860		NM_018477	ENSG00000131966	ACTR10	ACTR11|Arp10|Arp11|HARP11	actin related protein 10	protein-coding
229815	chr9	125646101	125647530	+	0	NA	intron (NM_024117, intron 4 of 10)	intron (NM_024117, intron 4 of 10)	60393	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
212192	chr7	117086971	117087130	+	0	NA	intron (NR_109980, intron 1 of 4)	intron (NR_109980, intron 1 of 4)	3731	NR_109980	93654		NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
231744	chr9	132114051	132114400	+	0	NA	Intergenic	L2a|LINE|L2	-34358	NM_004269	9442		NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|NEDSCAC|TRAP37	mediator complex subunit 27	protein-coding
6541	chr1	28584321	28584600	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-1477	NR_146382	85028		NR_024127	ENSG00000197989	SNHG12	ASLNC04080|C1orf79|LINC00100|NCRNA00100|PNAS-123	small nucleolar RNA host gene 12	ncRNA
212343	chr7	127450571	127450730	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-26233	NR_110024	100506682		NR_110024	ENSG00000226770	LINC03012	-	long intergenic non-protein coding RNA 3012	ncRNA
208629	chr7	72977071	72977230	+	0	NA	Intergenic	Intergenic	7468	NR_104007	100101148		NR_104007		FKBP6P1	-	FKBP6 pseudogene 1	pseudo
146127	chr20	48628551	48629380	+	0	NA	intron (NM_020820, intron 37 of 39)	L2a|LINE|L2	199034	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
176716	chr4	101279371	101279730	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	-38678	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
138627	chr2	210072901	210073130	+	0	NA	intron (NM_001307976, intron 6 of 13)	L1MC4|LINE|L1	43093	NR_110291	101928020		NR_110291		KANSL1L-AS1	-	KANSL1L antisense RNA 1	ncRNA
75737	chr15	68259771	68259930	+	0	NA	Intergenic	Intergenic	-17895	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
125011	chr2	9552421	9553400	+	0	NA	intron (NM_001382778, intron 1 of 18)	intron (NM_001382778, intron 1 of 18)	2920	NM_003183	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
165100	chr3	71511901	71512730	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	29774	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
41166	chr11	65613201	65614700	+	0	NA	5' UTR (NM_002419, exon 1 of 10)	5' UTR (NM_002419, exon 1 of 10)	271	NM_002419	4296		NM_002419	ENSG00000173327	MAP3K11	MEKK11|MLK-3|MLK3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding
25897	chr10	11273851	11273950	+	0	NA	intron (NM_001326330, intron 7 of 12)	AluSz6|SINE|Alu	70774	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
212227	chr7	120988601	120989250	+	0	NA	promoter-TSS (NM_001105533)	promoter-TSS (NM_001105533)	214	NM_024913	79974		NM_024913	ENSG00000106034	CPED1	C7orf58	cadherin like and PC-esterase domain containing 1	protein-coding
210045	chr7	94655871	94656530	+	0	NA	promoter-TSS (NM_001362808)	promoter-TSS (NM_001362808)	-67	NM_001099401	8910		NM_003919	ENSG00000127990	SGCE	DYT11|ESG|epsilon-SG	sarcoglycan epsilon	protein-coding
84884	chr16	31188601	31189650	+	0	NA	exon (NM_001170634, exon 9 of 15)	exon (NM_001170634, exon 9 of 15)	8986	NM_004960	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
154850	chr22	37117271	37117630	+	0	NA	Intergenic	Intergenic	-7737	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
15039	chr1	148371301	148372200	+	0	NA	Intergenic	ERV24B_Prim-int|LTR|ERV1	-9217	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
163376	chr3	50486271	50486430	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	17284	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
11031	chr1	84947201	84947930	+	0	NA	intron (NM_153259, intron 6 of 13)	L1M2|LINE|L1	49548	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
42562	chr11	71907651	71907950	+	0	NA	intron (NM_001375847, intron 5 of 5)	SATR2|Satellite|Satellite	20659	NM_001375848	100133315		NM_001375847	ENSG00000254469	XNDC1N	-	XRCC1 N-terminal domain containing 1, N-terminal like	protein-coding
188102	chr5	150362521	150362780	+	0	NA	intron (NM_001371623, intron 2 of 26)	L3|LINE|CR1	4953	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
144851	chr20	36891271	36891630	+	0	NA	3' UTR (NM_015474, exon 16 of 16)	3' UTR (NM_015474, exon 16 of 16)	15312	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
234571	chrX	19750301	19751500	+	0	NA	intron (NM_001353892, intron 2 of 17)	MIRc|SINE|MIR	48873	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
82594	chr16	18818771	18818930	+	0	NA	intron (NM_015092, intron 56 of 62)	AluSx3|SINE|Alu	-17301	NM_015161	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
89480	chr16	89114151	89114250	+	0	NA	intron (NR_147929, intron 5 of 9)	intron (NR_147929, intron 5 of 9)	20348	NM_001284316	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
7623	chr1	35544821	35545480	+	0	NA	intron (NM_024874, intron 2 of 20)	intron (NM_024874, intron 2 of 20)	12253	NM_024874	79932		NM_024874	ENSG00000142687	KIAA0319L	AAVR|AAVRL	KIAA0319 like	protein-coding
214523	chr7	150506271	150506430	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-8522	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
193459	chr6	30508851	30510200	+	0	NA	Intergenic	Intergenic	-6741	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
174414	chr4	39446501	39447650	+	0	NA	exon (NM_175737, exon 4 of 5)	exon (NM_175737, exon 4 of 5)	11847	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
203538	chr7	871921	872180	+	0	NA	intron (NM_001367647, intron 19 of 19)	intron (NM_001367647, intron 19 of 19)	-4504	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
121979	chr19	48497001	48497500	+	0	NA	intron (NM_001080434, intron 12 of 15)	MIR|SINE|MIR	15939	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
90214	chr17	496501	496700	+	0	NA	Intergenic	Intergenic	-50660	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
122295	chr19	49102271	49102500	+	0	NA	intron (NM_003089, intron 7 of 9)	intron (NM_003089, intron 7 of 9)	-11985	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
17502	chr1	156738071	156738430	+	0	NA	intron (NM_024540, intron 3 of 5)	intron (NM_024540, intron 3 of 5)	2838	NM_024540	79590		NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24|uL24m	mitochondrial ribosomal protein L24	protein-coding
38277	chr11	41623721	41623800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-90808	NR_120584	102723644		NR_120584	ENSG00000255171	LINC01499	-	long intergenic non-protein coding RNA 1499	ncRNA
64271	chr14	23310121	23310380	+	0	NA	3' UTR (NM_004050, exon 4 of 4)	3' UTR (NM_004050, exon 4 of 4)	3390	NM_001199839	599		NM_004050	ENSG00000129473	BCL2L2	BCL-W|BCL2-L-2|BCLW|PPP1R51	BCL2 like 2	protein-coding
42291	chr11	68340321	68341400	+	0	NA	intron (NM_002335, intron 1 of 22)	intron (NM_002335, intron 1 of 22)	28269	NM_002335	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
161431	chr3	41963801	41964230	+	0	NA	Intergenic	LTR18B|LTR|ERVL	-1912	NR_136342	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
61246	chr13	49994421	49994830	+	0	NA	intron (NR_152566, intron 11 of 13)	MER4A1|LTR|ERV1	1876	NR_037407	100500908		NR_037407	ENSG00000264864	MIR3613	-	microRNA 3613	ncRNA
32679	chr10	103915321	103916200	+	0	NA	intron (NM_024928, intron 2 of 9)	MER1B|DNA|hAT-Charlie	2424	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
187960	chr5	149357271	149359230	+	0	NA	promoter-TSS (NR_132366)	promoter-TSS (NR_132366)	204	NM_001301054	78991		NM_024028	ENSG00000145882	PCYOX1L	-	prenylcysteine oxidase 1 like	protein-coding
186275	chr5	134538721	134538980	+	0	NA	intron (NM_001289985, intron 3 of 11)	intron (NM_001289985, intron 3 of 11)	12742	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
131729	chr2	98164821	98164900	+	0	NA	intron (NM_144992, intron 8 of 27)	intron (NM_144992, intron 8 of 27)	15327	NM_001345864	200403		NM_144992	ENSG00000168658	VWA3B	SCAR22	von Willebrand factor A domain containing 3B	protein-coding
98907	chr17	48596221	48596750	+	0	NA	exon (NM_018952, exon 4 of 4)	exon (NM_018952, exon 4 of 4)	527	NR_033205	404266		NR_033201	ENSG00000233101	HOXB-AS3	-	HOXB cluster antisense RNA 3	ncRNA
169098	chr3	154328171	154328330	+	0	NA	Intergenic	MER4D1|LTR|ERV1	-3753	NM_001114397	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
201727	chr6	149790651	149790950	+	0	NA	intron (NM_001360452, intron 4 of 7)	AluSq|SINE|Alu	41059	NM_001360456	5110		NM_005389	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
239351	chrY	19499901	19500550	+	0	NA	intron (NR_033732, intron 1 of 10)	intron (NR_033732, intron 1 of 10)	2928	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
159545	chr3	14598251	14598550	+	0	NA	Intergenic	Intergenic	-53346	NR_135523	51244		NM_016474	ENSG00000154781	CCDC174	C3orf19|HSPC212|IHPM|IHPMR|ctr1	coiled-coil domain containing 174	protein-coding
79929	chr16	1738701	1739300	+	0	NA	intron (NM_015133, intron 4 of 31)	intron (NM_015133, intron 4 of 31)	4015	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
60469	chr13	41129721	41129980	+	0	NA	3' UTR (NM_152903, exon 1 of 1)	3' UTR (NM_152903, exon 1 of 1)	2952	NM_152903	89890		NM_152903	ENSG00000165572	KBTBD6	-	kelch repeat and BTB domain containing 6	protein-coding
221072	chr8	116880171	116880600	+	0	NA	Intergenic	Intergenic	-5585	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
144965	chr20	37189051	37189530	+	0	NA	intron (NM_001324306, intron 2 of 15)	L1MC5|LINE|L1	-9742	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
83300	chr16	24255851	24256500	+	0	NA	promoter-TSS (NM_006539)	promoter-TSS (NM_006539)	-160	NM_006539	10368		NM_006539	ENSG00000006116	CACNG3	-	calcium voltage-gated channel auxiliary subunit gamma 3	protein-coding
99041	chr17	48884401	48885100	+	0	NA	intron (NR_135674, intron 2 of 3)	AluSp|SINE|Alu	-8037	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
112024	chr19	5073971	5074380	+	0	NA	intron (NM_001370093, intron 7 of 11)	intron (NM_001370093, intron 7 of 11)	105062	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
92625	chr17	10112051	10112150	+	0	NA	intron (NM_201433, intron 1 of 13)	MER3|DNA|hAT-Charlie	-75443	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
74608	chr15	60587851	60588430	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	4386	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
173768	chr4	17335301	17335750	+	0	NA	Intergenic	Intergenic	-14643	NR_145770	109616994		NR_145770	ENSG00000206780	SNORA75B	-	small nucleolar RNA, H/ACA box 75B	snoRNA
42766	chr11	72742371	72742900	+	0	NA	intron (NM_001040118, intron 1 of 34)	MIRb|SINE|MIR	9754	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
181493	chr5	42990201	42990700	+	0	NA	intron (NR_104643, intron 1 of 1)	AluSc|SINE|Alu	2883	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
176512	chr4	94595901	94596100	+	0	NA	intron (NM_006457, intron 7 of 12)	intron (NM_006457, intron 7 of 12)	144058	NR_046186	10611		NM_006457	ENSG00000163110	PDLIM5	ENH|ENH1|L9|LIM	PDZ and LIM domain 5	protein-coding
129055	chr2	65067801	65068680	+	0	NA	intron (NM_015147, intron 1 of 6)	intron (NM_015147, intron 1 of 6)	11824	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
107795	chr18	51168151	51168450	+	0	NA	Intergenic	MIRb|SINE|MIR	29381	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
96944	chr17	42180711	42182150	+	0	NA	promoter-TSS (NM_012285)	promoter-TSS (NM_012285)	-288	NM_012285	23415		NM_012285	ENSG00000089558	KCNH4	BEC2|ELK1|Kv12.3	potassium voltage-gated channel subfamily H member 4	protein-coding
178647	chr4	152399301	152399700	+	0	NA	intron (NM_033632, intron 2 of 11)	L1MC1|LINE|L1	-16971	NM_001013415	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
119335	chr19	39951921	39952380	+	0	NA	Intergenic	Intergenic	-17524	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
45832	chr11	119369851	119371000	+	0	NA	intron (NM_001243759, intron 1 of 11)	MIRb|SINE|MIR	-6217	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
162258	chr3	47289701	47290100	+	0	NA	intron (NM_025010, intron 1 of 9)	L1PB4|LINE|L1	6956	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
146974	chr20	52972021	52972550	+	0	NA	promoter-TSS (NM_173485)	promoter-TSS (NM_173485)	-73	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
12390	chr1	101281301	101282400	+	0	NA	Intergenic	Intergenic	-41987	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
123808	chr19	55165321	55166400	+	0	NA	exon (NM_001256714, exon 3 of 12)	exon (NM_001256714, exon 3 of 12)	753	NM_001256715	352909		NM_178837	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	dynein axonemal assembly factor 3	protein-coding
182610	chr5	66166301	66166700	+	0	NA	intron (NM_139168, intron 8 of 12)	AluJb|SINE|Alu	21665	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
144300	chr20	34714671	34714830	+	0	NA	TTS (NM_014071)	TTS (NM_014071)	10031	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
154301	chr22	31942451	31942900	+	0	NA	intron (NR_126507, intron 1 of 2)	intron (NR_126507, intron 1 of 2)	-1860	NM_003405	7533		NM_003405	ENSG00000128245	YWHAH	YWHA1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta	protein-coding
8127	chr1	39258371	39259000	+	0	NA	intron (NM_012090, intron 5 of 92)	intron (NM_012090, intron 5 of 92)	-150388	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
206861	chr7	37445201	37445780	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	3462	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
3452	chr1	15935801	15936480	+	0	NA	exon (NM_015001, exon 11 of 15)	exon (NM_015001, exon 11 of 15)	39961	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
79205	chr16	348151	348450	+	0	NA	intron (NM_181050, intron 1 of 9)	intron (NM_181050, intron 1 of 9)	4423	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
220074	chr8	93971951	93972250	+	0	NA	Intergenic	L1ME3A|LINE|L1	55153	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
128123	chr2	48321551	48321650	+	0	NA	intron (NM_001375452, intron 1 of 5)	intron (NM_001375452, intron 1 of 5)	6918	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
143212	chr20	24963271	24963430	+	0	NA	3' UTR (NM_020531, exon 9 of 9)	3' UTR (NM_020531, exon 9 of 9)	14081	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
117979	chr19	33406621	33407330	+	0	NA	intron (NM_000285, intron 11 of 14)	intron (NM_000285, intron 11 of 14)	32451	NM_001252296	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
184264	chr5	96715971	96716700	+	0	NA	intron (NM_173060, intron 1 of 28)	intron (NM_173060, intron 1 of 28)	13675	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
198340	chr6	104771301	104771500	+	0	NA	intron (NR_146787, intron 16 of 21)	intron (NR_146787, intron 16 of 21)	88146	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
12365	chr1	101244521	101244780	+	0	NA	Intergenic	L1ME2|LINE|L1	7631	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
198875	chr6	109449401	109450780	+	0	NA	intron (NM_001159291, intron 7 of 23)	intron (NM_001159291, intron 7 of 23)	5682	NM_022765	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
187305	chr5	141608721	141609450	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	9915	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
143983	chr20	32908951	32909250	+	0	NA	intron (NM_001143967, intron 14 of 26)	intron (NM_001143967, intron 14 of 26)	50177	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
140698	chr2	234293921	234294400	+	0	NA	Intergenic	Intergenic	160435	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
154034	chr22	30473051	30473650	+	0	NA	Intergenic	Intergenic	-1333	NM_001257378	266629		NM_174975	ENSG00000100012	SEC14L3	TAP2	SEC14 like lipid binding 3	protein-coding
205006	chr7	6476701	6476900	+	0	NA	intron (NM_006854, intron 1 of 4)	L2c|LINE|L2	7352	NM_001100603	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
1469	chr1	2687751	2688300	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-55009	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
237498	chrX	119953921	119954880	+	0	NA	Intergenic	L1MC2|LINE|L1	-10649	NM_024528	79576		NM_024528	ENSG00000101882	NKAP	MRXSHD	NFKB activating protein	protein-coding
171749	chr3	198102301	198103880	+	0	NA	Intergenic	Intergenic	-22419	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
161223	chr3	39184851	39185150	+	0	NA	exon (NM_001351377, exon 2 of 2)	exon (NM_001351377, exon 2 of 2)	7595	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
66409	chr14	61511251	61512180	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	58479	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
120277	chr19	43430151	43430600	+	0	NA	Intergenic	Intergenic	15485	NM_001130011	83639		NM_031451	ENSG00000131126	TEX101	CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP	testis expressed 101	protein-coding
185920	chr5	132831771	132832130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1303	NM_001172700	134549		NM_133456	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
5592	chr1	26033471	26034080	+	0	NA	exon (NM_004455, exon 9 of 11)	exon (NM_004455, exon 9 of 11)	12000	NM_004455	2134		NM_004455	ENSG00000158008	EXTL1	EXTL	exostosin like glycosyltransferase 1	protein-coding
87577	chr16	72666151	72666880	+	0	NA	Intergenic	Intergenic	-1545	NR_159372	101927957		NR_126330	ENSG00000261008	LINC01572	-	long intergenic non-protein coding RNA 1572	ncRNA
190170	chr5	178151151	178151450	+	0	NA	TTS (NM_022762)	TTS (NM_022762)	2585	NM_017838	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
206605	chr7	35811751	35812480	+	0	NA	intron (NM_001788, intron 1 of 12)	AluSx1|SINE|Alu	10896	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
17706	chr1	158527271	158527500	+	0	NA	Intergenic	L1PA15-16|LINE|L1	20720	NM_001005189	391112		NM_001005189	ENSG00000197532	OR6Y1	OR1-11|OR6Y2	olfactory receptor family 6 subfamily Y member 1	protein-coding
13504	chr1	114738671	114739130	+	0	NA	intron (NM_001242891, intron 4 of 20)	AluJb|SINE|Alu	19084	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
235315	chrX	42942751	42944010	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-165217	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
161347	chr3	40315401	40315930	+	0	NA	Intergenic	Intergenic	5958	NM_005875	10289		NM_005875	ENSG00000114784	EIF1B	GC20	eukaryotic translation initiation factor 1B	protein-coding
73026	chr15	40776551	40777250	+	0	NA	intron (NM_018163, intron 4 of 10)	intron (NM_018163, intron 4 of 10)	6920	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
8012	chr1	38010971	38011330	+	0	NA	Intergenic	AluY|SINE|Alu	-1584	NM_016037	51118		NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11 small subunit processome component	protein-coding
75620	chr15	67136701	67136900	+	0	NA	intron (NM_001145102, intron 1 of 8)	intron (NM_001145102, intron 1 of 8)	-1221	NM_001145103	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
47305	chr12	1689071	1689430	+	0	NA	Intergenic	AluSz|SINE|Alu	-1820	NM_001375363	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
78551	chr15	92985201	92985400	+	0	NA	intron (NM_001271, intron 25 of 38)	intron (NM_001271, intron 25 of 38)	80901	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
169232	chr3	157138771	157138930	+	0	NA	Intergenic	AluSc|SINE|Alu	-15848	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
60593	chr13	41975471	41975630	+	0	NA	intron (NR_039974, intron 2 of 3)	AluSc5|SINE|Alu	14381	NR_039974	100507240		NR_039974	ENSG00000278338	VWA8-AS1	-	VWA8 antisense RNA 1 (head to head)	ncRNA
206955	chr7	38260051	38260450	+	0	NA	intron (NM_001003806, intron 3 of 3)	intron (NM_001003806, intron 3 of 3)	13397	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
109698	chr19	1053871	1054030	+	0	NA	intron (NM_019112, intron 25 of 46)	intron (NM_019112, intron 25 of 46)	-12009	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
168922	chr3	152349771	152350600	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-9195	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
2200	chr1	8652301	8652800	+	0	NA	intron (NM_012102, intron 3 of 23)	THE1C|LTR|ERVL-MaLR	-157637	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
217072	chr8	23527871	23530580	+	0	NA	intron (NM_001317812, intron 1 of 3)	CpG	269	NM_001317812	51312		NM_016612	ENSG00000147454	SLC25A37	HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217	solute carrier family 25 member 37	protein-coding
32902	chr10	110169471	110169630	+	0	NA	Intergenic	Intergenic	-17570	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
16648	chr1	155137901	155138300	+	0	NA	intron (NM_001287589, intron 3 of 3)	intron (NM_001287589, intron 3 of 3)	2248	NM_001287587	55974		NM_018845	ENSG00000169241	SLC50A1	HsSWEET1|RAG1AP1|SCP|SWEET1|slv	solute carrier family 50 member 1	protein-coding
221147	chr8	119638701	119639830	+	0	NA	promoter-TSS (NM_001130863)	promoter-TSS (NM_001130863)	-426	NM_006209	5168		NM_006209	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
234419	chrX	16802221	16802480	+	0	NA	intron (NM_001168683, intron 1 of 7)	AluSx|SINE|Alu	15884	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
104417	chr17	81062871	81063230	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	5316	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
71579	chr14	106477421	106478150	+	0	NA	Intergenic	Intergenic	-4654	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
237466	chrX	119769321	119769630	+	0	NA	Intergenic	LTR12|LTR|ERV1	10887	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
75571	chr15	67065101	67066980	+	0	NA	5' UTR (NM_005902, exon 1 of 9)	5' UTR (NM_005902, exon 1 of 9)	438	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
81006	chr16	4118251	4118550	+	0	NA	Intergenic	AluSx|SINE|Alu	-1958	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
166728	chr3	121657401	121657730	+	0	NA	intron (NM_005335, intron 2 of 13)	AluSz|SINE|Alu	3338	NM_005335	3059		NM_005335	ENSG00000180353	HCLS1	CTTNL|HS1|lckBP1|p75	hematopoietic cell-specific Lyn substrate 1	protein-coding
80708	chr16	3074431	3075750	+	0	NA	Intergenic	Intergenic	9306	NM_001012636	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
168044	chr3	136921201	136922180	+	0	NA	intron (NM_001291999, intron 1 of 3)	MER67B|LTR|ERV1	-8812	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
199082	chr6	111659851	111660150	+	0	NA	TTS (NM_153048)	TTS (NM_153048)	-53726	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
46253	chr11	124748201	124748430	+	0	NA	3' UTR (NM_001329920, exon 6 of 6)	3' UTR (NM_001329920, exon 6 of 6)	3940	NM_001329920	23584		NM_014312	ENSG00000019102	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
84419	chr16	30368771	30369540	+	0	NA	intron (NM_015527, intron 1 of 8)	intron (NM_015527, intron 1 of 8)	1339	NM_015527	26000		NM_015527	ENSG00000169221	TBC1D10B	EPI64B|FP2461	TBC1 domain family member 10B	protein-coding
32371	chr10	102400871	102401330	+	0	NA	intron (NM_001288724, intron 18 of 22)	intron (NM_001288724, intron 18 of 22)	5395	NM_001261403	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
47456	chr12	3777201	3777430	+	0	NA	Intergenic	Intergenic	-24206	NM_001144958	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
48397	chr12	9646171	9646400	+	0	NA	TTS (NR_157802)	TTS (NR_157802)	-1634	NR_046451	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
20522	chr1	198680301	198680890	+	0	NA	intron (NM_002838, intron 2 of 32)	L2|LINE|L2	41555	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
92272	chr17	8062951	8063380	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	24106	NM_001039131	247		NM_001141	ENSG00000179593	ALOX15B	15-LOX-2	arachidonate 15-lipoxygenase type B	protein-coding
225965	chr9	41119151	41119500	+	0	NA	intron (NR_147036, intron 2 of 6)	intron (NR_147036, intron 2 of 6)	5489	NR_147036	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
49088	chr12	14452901	14453300	+	0	NA	intron (NM_181352, intron 6 of 14)	L1M4|LINE|L1	67819	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
211925	chr7	112456671	112457600	+	0	NA	intron (NR_120333, intron 4 of 11)	intron (NR_120333, intron 4 of 11)	5077	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
152667	chr22	21586471	21587080	+	0	NA	intron (NR_046082, intron 1 of 3)	AluSx1|SINE|Alu	19061	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
109666	chr19	1018601	1019400	+	0	NA	intron (NM_033420, intron 1 of 9)	AluSx1|SINE|Alu	2123	NM_001033026	91304		NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
56215	chr12	111595571	111596630	+	0	NA	intron (NM_001310121, intron 1 of 25)	AluSz|SINE|Alu	3215	NM_001372574	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
230742	chr9	128879301	128879850	+	0	NA	intron (NM_001352995, intron 1 of 14)	intron (NM_001352995, intron 1 of 14)	2375	NM_004059	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
209160	chr7	75236371	75236730	+	0	NA	promoter-TSS (NM_001382504).2	promoter-TSS (NM_001382504).2	-637	NM_001382505	643862		NM_001382504	ENSG00000274570	SPDYE10	SPDYE10P	speedy/RINGO cell cycle regulator family member E10	protein-coding
135285	chr2	160077001	160077200	+	0	NA	Intergenic	Intergenic	-14485	NM_007366	22925		NM_007366	ENSG00000153246	PLA2R1	CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R	phospholipase A2 receptor 1	protein-coding
146038	chr20	47333771	47334330	+	0	NA	intron (NM_001281781, intron 2 of 20)	Tigger5b|DNA|TcMar-Tigger	15548	NR_024594	100131496		NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
58986	chr13	19961721	19963250	+	0	NA	intron (NM_001190965, intron 2 of 24)	intron (NM_001190965, intron 2 of 24)	3461	NM_001353161	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
158106	chr22	50016801	50017700	+	0	NA	Intergenic	Intergenic	-4485	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
27280	chr10	30284871	30285230	+	0	NA	Intergenic	Intergenic	64228	NM_018109	55149		NM_018109	ENSG00000107951	MTPAP	PAPD1|SPAX4|TENT6	mitochondrial poly(A) polymerase	protein-coding
173796	chr4	17636571	17637700	+	0	NA	intron (NM_015688, intron 14 of 17)	AluSx4|SINE|Alu	22494	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
22276	chr1	212722701	212723100	+	0	NA	Intergenic	L2a|LINE|L2	-23060	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
138452	chr2	206171301	206171500	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	9172	NR_002590	619569		NR_002590	ENSG00000207406	SNORA41	ACA41|SNORA41A	small nucleolar RNA, H/ACA box 41	snoRNA
90526	chr17	1478201	1479100	+	0	NA	exon (NM_001080950, exon 10 of 32)	exon (NM_001080950, exon 10 of 32)	6751	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
4602	chr1	22086751	22087050	+	0	NA	intron (NM_001791, intron 5 of 5)	intron (NM_001791, intron 5 of 5)	34191	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
80342	chr16	2472301	2472500	+	0	NA	exon (NM_006181, exon 1 of 6)	exon (NM_006181, exon 1 of 6)	1103	NM_006181	4917		NM_006181	ENSG00000162068	NTN3	NTN2L	netrin 3	protein-coding
214090	chr7	143635451	143636430	+	0	NA	intron (NM_001365429, intron 2 of 6).2	LTR19B|LTR|ERV1	11706	NR_110549	653691		NR_110549		TCAF2P1	FAM115D|FAM139B|TCAF2BP	TRPM8 channel associated factor 2 pseudogene 1	pseudo
104591	chr17	81398301	81398650	+	0	NA	intron (NM_001377448, intron 1 of 27)	CpG-11870	2303	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
154978	chr22	37288471	37289100	+	0	NA	intron (NM_013385, intron 1 of 12)	ERV3-16A3_I-int|LTR|ERVL	6277	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
15487	chr1	150375001	150375200	+	0	NA	intron (NM_015203, intron 1 of 10)	intron (NM_015203, intron 1 of 10)	10989	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
141563	chr2	241539601	241539800	+	0	NA	Intergenic	Intergenic	-19045	NM_032515	666		NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2 family apoptosis regulator BOK	protein-coding
121997	chr19	48568571	48568730	+	0	NA	intron (NM_177973, intron 1 of 6)	intron (NM_177973, intron 1 of 6)	-7086	NM_004605	6820		NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
225851	chr9	38088001	38088500	+	0	NA	Intergenic	Intergenic	-19023	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
215804	chr8	2241821	2242080	+	0	NA	Intergenic	L1PA8A|LINE|L1	165361	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
140666	chr2	234001351	234001880	+	0	NA	intron (NM_024080, intron 22 of 25)	intron (NM_024080, intron 22 of 25)	-49087	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
93297	chr17	18152101	18152300	+	0	NA	intron (NM_016239, intron 41 of 64)	intron (NM_016239, intron 41 of 64)	-31628	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
22083	chr1	211384171	211384330	+	0	NA	intron (NR_026761, intron 1 of 5)	intron (NR_026761, intron 1 of 5)	1495	NR_026761	84791		NM_032705	ENSG00000153363	LINC00467	ASAP|C1orf97	long intergenic non-protein coding RNA 467	ncRNA
236101	chrX	56811401	56811800	+	0	NA	intron (NM_001348129, intron 2 of 2)	L1PA7|LINE|L1	-74016	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
220938	chr8	108464521	108464850	+	0	NA	intron (NM_014673, intron 5 of 10)	intron (NM_014673, intron 5 of 10)	21061	NM_014673	9694		NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
131538	chr2	96639971	96640130	+	0	NA	Intergenic	Intergenic	-1738	NM_001349257	55683		NM_017991	ENSG00000114982	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
191457	chr6	10748971	10749330	+	0	NA	intron (NM_030969, intron 1 of 5)	intron (NM_030969, intron 1 of 5)	1345	NM_030969	81853		NM_030969	ENSG00000137210	TMEM14B	-	transmembrane protein 14B	protein-coding
154586	chr22	36275771	36275930	+	0	NA	Intergenic	AluSx|SINE|Alu	11057	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
44702	chr11	111540351	111542100	+	0	NA	intron (NM_178834, intron 1 of 6)	CpG	505	NM_178834	143903		NM_178834	ENSG00000204381	LAYN	-	layilin	protein-coding
123977	chr19	55431971	55432580	+	0	NA	3' UTR (NM_001145176, exon 4 of 4)	3' UTR (NM_001145176, exon 4 of 4)	10588	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
25698	chr10	8913401	8914000	+	0	NA	intron (NR_131944, intron 2 of 3)	intron (NR_131944, intron 2 of 3)	15711	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
152305	chr22	20327601	20329250	+	0	NA	Intergenic	AluYa5|SINE|Alu	-8365	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
22756	chr1	224383521	224383980	+	0	NA	Intergenic	Intergenic	14561	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
230597	chr9	128585001	128585400	+	0	NA	intron (NM_001375310, intron 18 of 57)	AluSx|SINE|Alu	32613	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
126919	chr2	32755821	32756780	+	0	NA	intron (NM_001193509, intron 12 of 19)	intron (NM_001193509, intron 12 of 19)	-69133	NR_027099	285045		NR_027098	ENSG00000230876	LINC00486	-	long intergenic non-protein coding RNA 486	ncRNA
100599	chr17	63443351	63443650	+	0	NA	intron (NM_001915, intron 1 of 5)	intron (NM_001915, intron 1 of 5)	-2673	NM_001017917	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
73396	chr15	42607021	42607350	+	0	NA	intron (NM_020759, intron 3 of 32)	intron (NM_020759, intron 3 of 32)	31579	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
150003	chr21	37006171	37007180	+	0	NA	promoter-TSS (NM_018962)	promoter-TSS (NM_018962)	-27	NM_018962	53820		NM_018962	ENSG00000183145	RIPPLY3	DSCR6	ripply transcriptional repressor 3	protein-coding
147611	chr20	62124871	62125030	+	0	NA	intron (NM_144703, intron 2 of 8)	AluSc|SINE|Alu	2475	NM_144703	149986		NM_014054	ENSG00000149657	LSM14B	C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3	LSM family member 14B	protein-coding
239214	chrY	12927771	12928480	+	0	NA	Intergenic	Intergenic	22420	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
115380	chr19	15242201	15242400	+	0	NA	intron (NM_001379291, intron 14 of 19)	intron (NM_001379291, intron 14 of 19)	-9253	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
197041	chr6	53350421	53350880	+	0	NA	Intergenic	Intergenic	-1471	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
51050	chr12	49793521	49793950	+	0	NA	exon (NM_001368048, exon 10 of 14)	exon (NM_001368048, exon 10 of 14)	34678	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
217196	chr8	26324521	26324850	+	0	NA	intron (NM_002717, intron 2 of 9)	THE1A-int|LTR|ERVL-MaLR	31469	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
66521	chr14	61744321	61744580	+	0	NA	intron (NM_181054, intron 12 of 13)	AluJb|SINE|Alu	4639	NR_045406	100750247		NR_045406		HIF1A-AS2	3'aHIF-1A|aHIF	HIF1A antisense RNA 2	ncRNA
225357	chr9	34665001	34666450	+	0	NA	5' UTR (NM_001320038, exon 1 of 3)	5' UTR (NM_001320038, exon 1 of 3)	320	NR_135148	730098		NM_001320037	ENSG00000187186	LOC730098	-	uncharacterized LOC730098	protein-coding
109912	chr19	1290071	1290300	+	0	NA	intron (NM_001405, intron 1 of 3)	intron (NM_001405, intron 1 of 3)	4312	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
89791	chr16	89489021	89489800	+	0	NA	intron (NM_001256182, intron 1 of 13)	CpG	1151	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
1705	chr1	5348721	5349250	+	0	NA	Intergenic	Intergenic	513756	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
11945	chr1	93849021	93849500	+	0	NA	Intergenic	AluJr|SINE|Alu	-2041	NM_001261408	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
117690	chr19	28435771	28436330	+	0	NA	non-coding (NR_110759, exon 10 of 10)	non-coding (NR_110759, exon 10 of 10)	-170638	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
157610	chr22	46047071	46047400	+	0	NA	Intergenic	AluSg|SINE|Alu	-2367	NR_027036	100271722		NR_027036		LINC00899	-	long intergenic non-protein coding RNA 899	ncRNA
136063	chr2	172864451	172864550	+	0	NA	intron (NM_001282900, intron 1 of 26)	intron (NM_001282900, intron 1 of 26)	4358	NM_001282900	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
77645	chr15	85493201	85493460	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	112727	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
109283	chr19	548151	548750	+	0	NA	intron (NM_001258351, intron 2 of 4)	intron (NM_001258351, intron 2 of 4)	4397	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
9406	chr1	47448551	47448800	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	10631	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
83471	chr16	27372471	27373250	+	0	NA	Intergenic	Intergenic	-29314	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
171776	chr4	123101	123300	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-1276	NM_001289930	255403		NM_153691	ENSG00000250312	ZNF718	-	zinc finger protein 718	protein-coding
215037	chr7	152460871	152461350	+	0	NA	Intergenic	AluSg4|SINE|Alu	-3014	NR_027387	100128822		NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
99457	chr17	50143701	50144250	+	0	NA	intron (NM_032595, intron 2 of 9)	intron (NM_032595, intron 2 of 9)	6702	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
92752	chr17	14545321	14545580	+	0	NA	Intergenic	Intergenic	241710	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
188285	chr5	151132571	151132930	+	0	NA	intron (NM_001193544, intron 8 of 24)	intron (NM_001193544, intron 8 of 24)	8934	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
149599	chr21	33321001	33322530	+	0	NA	Intergenic	Intergenic	-2630	NM_001384504	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
46773	chr11	129888121	129888780	+	0	NA	intron (NM_001143835, intron 4 of 26)	intron (NM_001143835, intron 4 of 26)	4559	NM_006165	4798		NM_006165	ENSG00000170322	NFRKB	INO80G	nuclear factor related to kappaB binding protein	protein-coding
99935	chr17	57135971	57136330	+	0	NA	Intergenic	Intergenic	40661	NM_001370427	8165		NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding
94689	chr17	30649651	30649950	+	0	NA	Intergenic	MIR|SINE|MIR	25482	NR_033420	6459		NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2	pseudo
12020	chr1	96726151	96726800	+	0	NA	intron (NM_001300990, intron 2 of 12)	AluY|SINE|Alu	3837	NR_125356	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
117946	chr19	33235121	33236250	+	0	NA	Intergenic	Intergenic	-9835	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
44348	chr11	102429621	102430150	+	0	NA	intron (NM_052932, intron 2 of 4)	intron (NM_052932, intron 2 of 4)	22880	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
115234	chr19	14509271	14510100	+	0	NA	Intergenic	MIR|SINE|MIR	8177	NM_001300914	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
226012	chr9	41646601	41646800	+	0	NA	promoter-TSS (NR_103714)	promoter-TSS (NR_103714)	-974	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
62382	chr13	99257401	99257630	+	0	NA	intron (NM_005292, intron 1 of 2)	intron (NM_005292, intron 1 of 2)	913	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
185452	chr5	131262071	131262530	+	0	NA	Intergenic	Intergenic	-1753	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
4917	chr1	23896401	23897130	+	0	NA	intron (NM_001841, intron 1 of 1)	MIR3|SINE|MIR	16597	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
133727	chr2	127384601	127384830	+	0	NA	intron (NM_001371911, intron 1 of 16)	AluJb|SINE|Alu	3260	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
17223	chr1	156282161	156283900	+	0	NA	promoter-TSS (NM_001323615)	promoter-TSS (NM_001323615)	117	NR_026678	84283		NM_032323	ENSG00000163472	TMEM79	MATT	transmembrane protein 79	protein-coding
140912	chr2	237705321	237705800	+	0	NA	intron (NM_001137551, intron 1 of 11)	AluJb|SINE|Alu	13355	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
203729	chr7	1136751	1137150	+	0	NA	intron (NM_001134396, intron 1 of 4)	L2a|LINE|L2	1297	NM_001318252	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
63707	chr14	21191521	21192850	+	0	NA	Intergenic	MER52A|LTR|ERV1	13318	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
181215	chr5	39171621	39173000	+	0	NA	intron (NM_199335, intron 2 of 17)	AluSz|SINE|Alu	47253	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
62518	chr13	99505521	99506200	+	0	NA	intron (NM_004800, intron 1 of 16)	intron (NM_004800, intron 1 of 16)	4388	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
219503	chr8	73967221	73967480	+	0	NA	intron (NM_001204858, intron 1 of 4)	MER58B|DNA|hAT-Charlie	4558	NM_001204861	6921		NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
230411	chr9	128118871	128119450	+	0	NA	promoter-TSS (NR_033374)	promoter-TSS (NR_033374)	-426	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
107822	chr18	54174021	54174380	+	0	NA	intron (NM_003927, intron 3 of 6)	MER20|DNA|hAT-Charlie	48212	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
89982	chr16	89841071	89841980	+	0	NA	intron (NM_032451, intron 1 of 14)	intron (NM_032451, intron 1 of 14)	13050	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
16426	chr1	154556351	154556800	+	0	NA	intron (NM_017582, intron 1 of 12)	intron (NM_017582, intron 1 of 12)	2087	NM_017582	55585		NM_017582	ENSG00000160714	UBE2Q1	GTAP|NICE-5|NICE5|PRO3094|UBE2Q	ubiquitin conjugating enzyme E2 Q1	protein-coding
168450	chr3	142948021	142948280	+	0	NA	Intergenic	Intergenic	15524	NM_198504	344838		NM_198504	ENSG00000188582	PAQR9	BLNC1	progestin and adipoQ receptor family member 9	protein-coding
48199	chr12	8065321	8065580	+	0	NA	intron (NM_004054, intron 1 of 1)	AluSx|SINE|Alu	909	NM_001326475	719		NM_004054	ENSG00000171860	C3AR1	AZ3B|C3AR|HNFAG09	complement C3a receptor 1	protein-coding
216700	chr8	22190851	22191380	+	0	NA	intron (NR_033404, intron 8 of 15)	intron (NR_033404, intron 8 of 15)	25743	NR_033403	649		NM_001199	ENSG00000168487	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
56654	chr12	119667001	119668750	+	0	NA	promoter-TSS (NM_006253)	promoter-TSS (NM_006253)	-258	NM_006253	5564		NM_006253	ENSG00000111725	PRKAB1	AMPK|HAMPKb	protein kinase AMP-activated non-catalytic subunit beta 1	protein-coding
140283	chr2	232342821	232343280	+	0	NA	intron (NM_001257281, intron 13 of 13)	intron (NM_001257281, intron 13 of 13)	-35701	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
67729	chr14	73508401	73509280	+	0	NA	intron (NM_203309, intron 7 of 16)	intron (NM_203309, intron 7 of 16)	17907	NM_024644	79697		NM_024644	ENSG00000170468	RIOX1	C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66	ribosomal oxygenase 1	protein-coding
9096	chr1	45116371	45116800	+	0	NA	intron (NM_020883, intron 1 of 13)	intron (NM_020883, intron 1 of 13)	90020	NM_020883	57643		NM_020883	ENSG00000162415	ZSWIM5	-	zinc finger SWIM-type containing 5	protein-coding
139017	chr2	218390701	218391100	+	0	NA	intron (NM_000578, intron 9 of 14)	AluJo|SINE|Alu	-7333	NM_001206878	58190		NM_021198	ENSG00000144579	CTDSP1	NIF3|NLI-IF|NLIIF|SCP1	CTD small phosphatase 1	protein-coding
209019	chr7	74371851	74372150	+	0	NA	intron (NM_032421, intron 8 of 15)	intron (NM_032421, intron 8 of 15)	-81906	NM_001199207	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
170574	chr3	186822271	186822430	+	0	NA	intron (NR_125409, intron 3 of 3)	AluSc|SINE|Alu	3171	NR_125409	102724699		NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
43125	chr11	75247821	75248080	+	0	NA	Intergenic	L2c|LINE|L2	7176	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
205494	chr7	17933801	17934680	+	0	NA	intron (NM_015132, intron 1 of 25)	intron (NM_015132, intron 1 of 25)	6254	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
34966	chr11	495671	496130	+	0	NA	intron (NM_203389, intron 8 of 9).2	intron (NM_203389, intron 8 of 9).2	10868	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
215210	chr7	155992351	155992850	+	0	NA	Intergenic	Intergenic	30043	NR_168379	389602		NM_001291913	ENSG00000204876	LOC389602	-	uncharacterized LOC389602	ncRNA
139384	chr2	221577451	221577750	+	0	NA	Intergenic	Intergenic	-3398	NM_001304536	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
161841	chr3	45692221	45692550	+	0	NA	intron (NM_001319073, intron 2 of 20)	AluJb|SINE|Alu	2989	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
27466	chr10	32008771	32009130	+	0	NA	TTS (NM_004521)	TTS (NM_004521)	47475	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
4639	chr1	22125171	22125730	+	0	NA	intron (NM_030761, intron 2 of 4)	intron (NM_030761, intron 2 of 4)	17647	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
187667	chr5	143205701	143207130	+	0	NA	intron (NM_001349547, intron 20 of 21)	intron (NM_001349547, intron 20 of 21)	13915	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
103643	chr17	78760801	78761300	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSg|SINE|Alu	21158	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
190624	chr5	181193651	181194180	+	0	NA	TTS (NM_203296)	TTS (NM_203296)	-2007	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
54931	chr12	96206851	96207150	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	12625	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
26263	chr10	14686471	14686630	+	0	NA	intron (NM_001282695, intron 1 of 5)	intron (NM_001282695, intron 1 of 5)	-82149	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
189469	chr5	173062051	173062350	+	0	NA	intron (NM_001168393, intron 1 of 3)	L2c|LINE|L2	5848	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
132894	chr2	111365921	111366380	+	0	NA	non-coding (NR_015395, exon 2 of 7)	non-coding (NR_015395, exon 2 of 7)	-45059	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
61074	chr13	48318201	48318530	+	0	NA	intron (NM_000321, intron 2 of 26)	intron (NM_000321, intron 2 of 26)	14614	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
128770	chr2	62212951	62213050	+	0	NA	intron (NM_006577, intron 1 of 1)	intron (NM_006577, intron 1 of 1)	-2521	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
209313	chr7	76051501	76052900	+	0	NA	intron (NM_001282404, intron 1 of 7)	intron (NM_001282404, intron 1 of 7)	4094	NM_001282403	4191		NM_005918	ENSG00000146701	MDH2	DEE51|EIEE51|M-MDH|MDH|MGC:3559|MOR1	malate dehydrogenase 2	protein-coding
224758	chr9	21967771	21967930	+	0	NA	TTS (NM_001363763)	TTS (NM_001363763)	711	NR_024274	51198		NM_016349		CDKN2A-AS1	C9orf53|CDKN2A-DT|bA149I2.3	CDKN2A antisense RNA 1	ncRNA
223238	chr8	143614971	143616030	+	0	NA	intron (NM_003313, intron 3 of 10)	intron (NM_003313, intron 3 of 10)	2049	NM_003313	7264		NM_003313	ENSG00000104522	GFUS	FX|P35B|SDR4E1|TSTA3	GDP-L-fucose synthase	protein-coding
114672	chr19	13088951	13090000	+	0	NA	intron (NM_001271043, intron 9 of 10)	intron (NM_001271043, intron 9 of 10)	13383	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
138920	chr2	218185951	218186880	+	0	NA	Intergenic	Intergenic	-19453	NM_000634	3577		NM_000634	ENSG00000163464	CXCR1	C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA	C-X-C motif chemokine receptor 1	protein-coding
31768	chr10	98045671	98046130	+	0	NA	Intergenic	Intergenic	-15072	NM_001206528	55118		NM_018058	ENSG00000095713	CRTAC1	ASPIC|ASPIC1|CEP-68|CEP68|LOTUS	cartilage acidic protein 1	protein-coding
73158	chr15	41434751	41435250	+	0	NA	intron (NM_015138, intron 1 of 17)	AluSx3|SINE|Alu	17896	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
14452	chr1	144410071	144411200	+	0	NA	Intergenic	Intergenic	-1941	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
30066	chr10	73867771	73868750	+	0	NA	intron (NR_160045, intron 1 of 17)	intron (NR_160045, intron 1 of 17)	6295	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
56333	chr12	112909221	112909550	+	0	NA	intron (NM_016816, intron 2 of 5)	AluJo|SINE|Alu	2423	NM_001320151	4938		NM_002534	ENSG00000089127	OAS1	E18/E16|IFI-4|IMD100|OIAS|OIASI	2'-5'-oligoadenylate synthetase 1	protein-coding
103744	chr17	78903171	78903330	+	0	NA	promoter-TSS (NM_001243541)	promoter-TSS (NM_001243541)	-49	NM_001243541	100653515		NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
190723	chr6	298571	298730	+	0	NA	intron (NR_104475, intron 1 of 3)	intron (NR_104475, intron 1 of 3)	6593	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
66670	chr14	63904301	63904500	+	0	NA	intron (NM_015180, intron 1 of 114)	L1PA16|LINE|L1	51396	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
102595	chr17	75900751	75901480	+	0	NA	intron (NM_032478, intron 5 of 8)	intron (NM_032478, intron 5 of 8)	3769	NM_032478	64978		NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3|mL38	mitochondrial ribosomal protein L38	protein-coding
139230	chr2	219298401	219299550	+	0	NA	intron (NM_001199763, intron 11 of 21)	intron (NM_001199763, intron 11 of 21)	-4775	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
150309	chr21	42002271	42003230	+	0	NA	intron (NM_001320731, intron 2 of 3)	intron (NM_001320731, intron 2 of 3)	-6444	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
18804	chr1	167633451	167634530	+	0	NA	intron (NM_001322923, intron 1 of 5)	L2a|LINE|L2	3758	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
48027	chr12	6947771	6948130	+	0	NA	intron (NM_080548, intron 1 of 15)	L2a|LINE|L2	1373	NM_080548	5777		NM_002831	ENSG00000111679	PTPN6	HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1	protein tyrosine phosphatase non-receptor type 6	protein-coding
186484	chr5	138093121	138093380	+	0	NA	TTS (NR_125351)	TTS (NR_125351)	9217	NM_001300938	7478		NM_031933	ENSG00000061492	WNT8A	WNT8D	Wnt family member 8A	protein-coding
97462	chr17	43713521	43714250	+	0	NA	Intergenic	CpG	44906	NM_025237	50964		NM_025237	ENSG00000167941	SOST	CDD|DAND6|SOST1|VBCH	sclerostin	protein-coding
84843	chr16	31125671	31125830	+	0	NA	intron (NM_032188, intron 3 of 10)	intron (NM_032188, intron 3 of 10)	8086	NM_032188	84148		NM_032188	ENSG00000103510	KAT8	LIGOWS|MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
50031	chr12	43762571	43762880	+	0	NA	intron (NM_001145256, intron 2 of 11)	L2c|LINE|L2	3774	NM_016123	51135		NM_016123	ENSG00000198001	IRAK4	IMD67|IPD1|IRAK-4|NY-REN-64|REN64	interleukin 1 receptor associated kinase 4	protein-coding
95919	chr17	38913171	38913780	+	0	NA	intron (NM_006148, intron 4 of 6)	intron (NM_006148, intron 4 of 6)	-1504	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
55566	chr12	106223901	106224480	+	0	NA	Intergenic	MIR3|SINE|MIR	23830	NM_006825	10970		NM_006825	ENSG00000136026	CKAP4	CLIMP-63|CLIMP63|ERGIC-63|p63	cytoskeleton associated protein 4	protein-coding
91911	chr17	7311421	7311680	+	0	NA	intron (NM_001143762, intron 4 of 5)	intron (NM_001143762, intron 4 of 5)	3175	NM_001143762	1984		NM_001970	ENSG00000132507	EIF5A	EIF-5A|EIF5A1|FABAS|eIF-4D|eIF5AI	eukaryotic translation initiation factor 5A	protein-coding
184786	chr5	111070251	111071650	+	0	NA	promoter-TSS (NM_033035)	promoter-TSS (NM_033035)	-763	NM_033035	85480		NM_033035	ENSG00000145777	TSLP	-	thymic stromal lymphopoietin	protein-coding
217168	chr8	26297921	26298830	+	0	NA	intron (NM_002717, intron 2 of 9)	HAL1|LINE|L1	5159	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
200188	chr6	130872251	130872730	+	0	NA	intron (NM_001350307, intron 12 of 18)	intron (NM_001350307, intron 12 of 18)	45084	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
73851	chr15	50066201	50066500	+	0	NA	intron (NM_024837, intron 3 of 27)	intron (NM_024837, intron 3 of 27)	47029	NR_073598	79895		NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
72331	chr15	31274351	31274650	+	0	NA	Intergenic	Intergenic	-43638	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
136369	chr2	176101051	176101350	+	0	NA	3' UTR (NM_021193, exon 2 of 2)	3' UTR (NM_021193, exon 2 of 2)	1405	NM_021193	3238		NM_021193	ENSG00000170178	HOXD12	HOX4H	homeobox D12	protein-coding
183473	chr5	79251101	79252500	+	0	NA	intron (NM_152405, intron 1 of 10)	AluSp|SINE|Alu	15669	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
35531	chr11	1570621	1571300	+	0	NA	intron (NM_004420, intron 1 of 6)	intron (NM_004420, intron 1 of 6)	1311	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
14234	chr1	143227371	143228350	+	0	NA	Intergenic	Intergenic	194732	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
154807	chr22	36986271	36986430	+	0	NA	Intergenic	Intergenic	21102	NR_038954	100506241		NR_038954	ENSG00000215403	LL22NC01-81G9.3	-	uncharacterized protein FLJ39582-like	ncRNA
31539	chr10	96903021	96903280	+	0	NA	intron (NM_032440, intron 2 of 7)	Tigger3c|DNA|TcMar-Tigger	70205	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
206367	chr7	30570201	30570400	+	0	NA	intron (NR_038889, intron 2 of 6)	LTR12|LTR|ERV1	7479	NR_038889	401320		NR_038889		GARS1-DT	GARS-DT	GARS1 divergent transcript	ncRNA
120026	chr19	41949551	41950050	+	0	NA	Intergenic	Intergenic	9521	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
8175	chr1	39557321	39557650	+	0	NA	intron (NR_003929, intron 1 of 8)	AluY|SINE|Alu	2213	NR_003929	728448		NR_003929	ENSG00000291129	PPIEL	PPIEP1	peptidylprolyl isomerase E like (pseudogene)	pseudo
165157	chr3	72258621	72259080	+	0	NA	Intergenic	Intergenic	107593	NR_038221	201617		NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
35040	chr11	579151	579530	+	0	NA	intron (NM_001286582, intron 1 of 17)	intron (NM_001286582, intron 1 of 17)	2870	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
109816	chr19	1165171	1165930	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	8718	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
229350	chr9	120923151	120923750	+	0	NA	intron (NM_005658, intron 3 of 7)	MER58B|DNA|hAT-Charlie	3346	NM_005658	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
65567	chr14	51958371	51958530	+	0	NA	intron (NM_053064, intron 3 of 3)	L1MC4|LINE|L1	-31096	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
109531	chr19	856201	856400	+	0	NA	TTS (NM_001972)	TTS (NM_001972)	-3364	NM_001928	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
219030	chr8	65635451	65636380	+	0	NA	Intergenic	AluSp|SINE|Alu	-1698	NM_001286702	55156		NM_018120	ENSG00000104442	ARMC1	Arcp	armadillo repeat containing 1	protein-coding
167270	chr3	128615351	128615900	+	0	NA	Intergenic	Intergenic	35193	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
24872	chr10	924051	924150	+	0	NA	intron (NM_001351277, intron 1 of 17)	AluJo|SINE|Alu	7605	NM_001351277	23185		NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	La ribonucleoprotein 4B	protein-coding
188169	chr5	150458521	150460180	+	0	NA	Intergenic	MIRb|SINE|MIR	-9611	NM_001025071	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
112897	chr19	7633571	7633730	+	0	NA	promoter-TSS (NM_001271830)	promoter-TSS (NM_001271830)	69	NM_174895	126006		NM_174895	ENSG00000174788	PCP2	GPSM4|PCD5	Purkinje cell protein 2	protein-coding
19138	chr1	171543151	171544200	+	0	NA	intron (NM_015172, intron 16 of 33)	intron (NM_015172, intron 16 of 33)	58145	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
166965	chr3	125381721	125382330	+	0	NA	Intergenic	Intergenic	-6671	NM_001348430	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
18264	chr1	161074901	161075100	+	0	NA	intron (NM_030916, intron 4 of 8)	intron (NM_030916, intron 4 of 8)	-5109	NM_001287602	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
37395	chr11	17164321	17164580	+	0	NA	intron (NM_001321380, intron 1 of 31)	intron (NM_001321380, intron 1 of 31)	43536	NM_002645	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
152817	chr22	21862221	21862900	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSz6|SINE|Alu	5085	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
179256	chr4	174778951	174779050	+	0	NA	intron (NM_001042543, intron 2 of 8)	L1PA2|LINE|L1	50247	NM_001042543	8001		NM_006529	ENSG00000145451	GLRA3	-	glycine receptor alpha 3	protein-coding
80013	chr16	1924601	1924800	+	0	NA	Intergenic	Intergenic	-6285	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
120844	chr19	45514801	45516150	+	0	NA	intron (NM_003370, intron 1 of 12)	intron (NM_003370, intron 1 of 12)	7996	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
50540	chr12	47907771	47908130	+	0	NA	Intergenic	Intergenic	-2956	NM_001017535	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
103175	chr17	77439351	77440080	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-11034	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
19831	chr1	182845501	182846130	+	0	NA	intron (NM_001357, intron 3 of 27)	MER21B|LTR|ERVL	-6224	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
119387	chr19	40224571	40225180	+	0	NA	intron (NM_024877, intron 1 of 4)	L2b|LINE|L2	1814	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
225728	chr9	37023521	37023780	+	0	NA	intron (NR_103999, intron 1 of 8)	intron (NR_103999, intron 1 of 8)	10618	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
6698	chr1	29176321	29176580	+	0	NA	intron (NM_005626, intron 1 of 5)	intron (NM_005626, intron 1 of 5)	5450	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
236115	chrX	57289851	57290150	+	0	NA	intron (NM_174912, intron 1 of 10)	MIRb|SINE|MIR	3146	NR_148564	158584		NM_174912	ENSG00000165591	FAAH2	AMDD	fatty acid amide hydrolase 2	protein-coding
22548	chr1	222474321	222474580	+	0	NA	Intergenic	Intergenic	73654	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
37360	chr11	15101101	15101380	+	0	NA	Intergenic	Intergenic	-11184	NM_001031853	387755		NM_001031853	ENSG00000188487	INSC	-	INSC spindle orientation adaptor protein	protein-coding
33646	chr10	119693221	119693880	+	0	NA	Intergenic	L2c|LINE|L2	-32497	NM_001243195	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
155419	chr22	38404051	38404350	+	0	NA	Intergenic	Intergenic	-5274	NR_002821	400927		NM_001034843		TPTEP2	Z98749.2	TPTE pseudogene 2	pseudo
211768	chr7	107332821	107333080	+	0	NA	intron (NM_001379511, intron 10 of 20)	intron (NM_001379511, intron 10 of 20)	-137107	NM_005295	2845		NM_005295	ENSG00000172209	GPR22	-	G protein-coupled receptor 22	protein-coding
115499	chr19	15399801	15400000	+	0	NA	intron (NM_014371, intron 8 of 13)	intron (NM_014371, intron 8 of 13)	19088	NM_014371	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
86311	chr16	58854551	58854650	+	0	NA	Intergenic	Intergenic	-120284	NM_002080	2806		NM_002080	ENSG00000125166	GOT2	DEE82|KAT4|KATIV|KYAT4|mitAAT	glutamic-oxaloacetic transaminase 2	protein-coding
70100	chr14	100213911	100215780	+	0	NA	Intergenic	Intergenic	-24299	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
97565	chr17	44088401	44089180	+	0	NA	intron (NM_001382393, intron 11 of 26)	intron (NM_001382393, intron 11 of 26)	17879	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
8560	chr1	41344371	41344930	+	0	NA	Intergenic	MIRb|SINE|MIR	-16784	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
222825	chr8	142480801	142481000	+	0	NA	intron (NM_001702, intron 9 of 30)	intron (NM_001702, intron 9 of 30)	31251	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
43624	chr11	83192071	83192300	+	0	NA	intron (NR_149009, intron 1 of 2)	HERV1_LTRb|LTR|ERV1	1484	NR_149009	100506282		NM_018705	ENSG00000247137	ANKRD42-DT	-	ANKRD42 divergent transcript	ncRNA
140816	chr2	236536571	236537330	+	0	NA	Intergenic	MIRb|SINE|MIR	-29415	NM_001270584	79781		NM_024726	ENSG00000132321	IQCA1	4930465P12Rik|DRC11|IQCA	IQ motif containing with AAA domain 1	protein-coding
166851	chr3	123244171	123244350	+	0	NA	intron (NM_012430, intron 4 of 6)	intron (NM_012430, intron 4 of 6)	42317	NM_012430	26984		NM_012430	ENSG00000121542	SEC22A	SEC22L2	SEC22 homolog A, vesicle trafficking protein	protein-coding
70468	chr14	102067351	102068230	+	0	NA	Intergenic	AluSg4|SINE|Alu	19254	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
69928	chr14	99537301	99537700	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	56091	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
107926	chr18	57631821	57632080	+	0	NA	intron (NR_164148, intron 1 of 2)	L2|LINE|L2	1619	NR_164148	100505549		NR_164148	ENSG00000267040	ATP8B1-AS1	-	ATP8B1 antisense RNA 1	ncRNA
140531	chr2	233240721	233241250	+	0	NA	Intergenic	Intergenic	-10586	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
235978	chrX	53747221	53747480	+	0	NA	Intergenic	L1MA4A|LINE|L1	-60631	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
94876	chr17	31526501	31526830	+	0	NA	intron (NM_001346748, intron 8 of 12)	AluSc|SINE|Alu	-8218	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
26803	chr10	23436771	23437280	+	0	NA	Intergenic	Intergenic	-2050	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
91841	chr17	7204421	7206250	+	0	NA	promoter-TSS (NM_001321077)	promoter-TSS (NM_001321077)	-148	NM_001321076	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
23587	chr1	229625151	229626680	+	0	NA	promoter-TSS (NM_001314021)	promoter-TSS (NM_001314021)	132	NM_014409	27097		NM_014409	ENSG00000135801	TAF5L	PAF65B	TATA-box binding protein associated factor 5 like	protein-coding
95849	chr17	38821651	38821950	+	0	NA	intron (NM_017748, intron 1 of 9)	AluSx4|SINE|Alu	3521	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
135010	chr2	153719771	153719950	+	0	NA	Intergenic	L1PA2|LINE|L1	-152062	NM_001376392	114805		NM_052917	ENSG00000144278	GALNT13	GalNAc-T13|LINC01850	polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
14555	chr1	144917121	144917440	+	0	NA	non-coding (NR_104189, exon 3 of 4).2	non-coding (NR_104189, exon 3 of 4).2	-177016	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
84913	chr16	31222001	31222600	+	0	NA	intron (NM_001008274, intron 5 of 6)	AluSx1|SINE|Alu	-5165	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
97590	chr17	44107901	44108330	+	0	NA	intron (NM_001382393, intron 3 of 26)	intron (NM_001382393, intron 3 of 26)	-7797	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
49543	chr12	26651651	26651900	+	0	NA	intron (NM_002223, intron 21 of 56)	L1MC4|LINE|L1	181419	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
164127	chr3	56711471	56711630	+	0	NA	Intergenic	L1MDb|LINE|L1	-28285	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
38936	chr11	47507271	47507830	+	0	NA	intron (NM_001376409, intron 1 of 15)	intron (NM_001376409, intron 1 of 15)	-13029	NM_198700	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
112436	chr19	6360971	6362200	+	0	NA	promoter-TSS (NM_006012)	promoter-TSS (NM_006012)	54	NM_006012	8192		NM_006012	ENSG00000125656	CLPP	DFNB81|PRLTS3	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding
150530	chr21	42973871	42975800	+	0	NA	intron (NM_001320694, intron 1 of 10)	CpG	273	NM_004571	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
117842	chr19	31352651	31353300	+	0	NA	Intergenic	CpG	-3539	NR_138035	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
133358	chr2	117525871	117526030	+	0	NA	Intergenic	L1PA2|LINE|L1	-288741	NM_006773	8886		NM_006773	ENSG00000088205	DDX18	Has1|MrDb	DEAD-box helicase 18	protein-coding
128558	chr2	60888151	60888250	+	0	NA	intron (NM_001291746, intron 1 of 9)	AluSx1|SINE|Alu	6626	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
10247	chr1	63651151	63651950	+	0	NA	intron (NM_001172819, intron 8 of 10)	intron (NM_001172819, intron 8 of 10)	28334	NM_001172818	5236		NM_002633	ENSG00000079739	PGM1	CDG1T|GSD14	phosphoglucomutase 1	protein-coding
58961	chr13	19845701	19845950	+	0	NA	intron (NM_001142684, intron 4 of 7)	MER21C|LTR|ERVL	17811	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
147367	chr20	58405821	58406080	+	0	NA	intron (NM_001195677, intron 1 of 2)	AluSc8|SINE|Alu	16721	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
224570	chr9	19748551	19748900	+	0	NA	intron (NM_001375850, intron 2 of 10)	intron (NM_001375850, intron 2 of 10)	40312	NM_020344	25769		NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
91148	chr17	3759721	3760130	+	0	NA	intron (NM_002208, intron 7 of 30)	MLT1H2|LTR|ERVL-MaLR	36022	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
82328	chr16	15757871	15758050	+	0	NA	exon (NM_001040113, exon 14 of 43)	exon (NM_001040113, exon 14 of 43)	99068	NM_001040113	4629		NM_002474	ENSG00000133392	MYH11	AAT4|FAA4|SMHC|SMMHC|SMMS-1|VSCM2	myosin heavy chain 11	protein-coding
213749	chr7	140449771	140450730	+	0	NA	Intergenic	AluSx|SINE|Alu	29255	NM_013446	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
202268	chr6	157030271	157030630	+	0	NA	intron (NM_001371656, intron 6 of 20)	MLT1H|LTR|ERVL-MaLR	-5977	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
180730	chr5	31731151	31731530	+	0	NA	intron (NM_178140, intron 1 of 24)	L1MB5|LINE|L1	92209	NM_178140	23037		NM_015022	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
220829	chr8	102849801	102850000	+	0	NA	intron (NM_148174, intron 2 of 11)	intron (NM_148174, intron 2 of 11)	14263	NM_001301668	51582		NM_015878	ENSG00000155096	AZIN1	AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
29121	chr10	68406401	68407700	+	0	NA	non-coding (NR_103475, exon 1 of 19)	non-coding (NR_103475, exon 1 of 19)	139	NM_017987	55680		NM_017987	ENSG00000204130	RUFY2	RABIP4R|ZFYVE13	RUN and FYVE domain containing 2	protein-coding
113623	chr19	10320771	10320930	+	0	NA	exon (NM_133452, exon 9 of 13)	exon (NM_133452, exon 9 of 13)	-4835	NM_001031734	112812		NM_080665	ENSG00000267673	FDX2	FDX1L|MEOAL	ferredoxin 2	protein-coding
164292	chr3	57596801	57598830	+	0	NA	promoter-TSS (NM_001660)	promoter-TSS (NM_001660)	26	NR_132369	106144532		NR_132369	ENSG00000272146	ARF4-AS1	-	ARF4 antisense RNA 1	ncRNA
235034	chrX	40067801	40068280	+	0	NA	intron (NM_001123384, intron 5 of 13)	intron (NM_001123384, intron 5 of 13)	29918	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
222547	chr8	140600101	140600300	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	35433	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
4971	chr1	24184401	24184930	+	0	NA	intron (NM_173065, intron 1 of 5)	L2c|LINE|L2	2624	NM_173064	163702		NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	interferon lambda receptor 1	protein-coding
104638	chr17	81444701	81445080	+	0	NA	intron (NM_001377448, intron 8 of 27)	intron (NM_001377448, intron 8 of 27)	6298	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
173925	chr4	25366771	25367280	+	0	NA	intron (NM_024936, intron 12 of 12)	intron (NM_024936, intron 12 of 12)	-10238	NM_001286756	29945		NM_013367	ENSG00000053900	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
206611	chr7	35830201	35830400	+	0	NA	intron (NM_001788, intron 1 of 12)	L2a|LINE|L2	29081	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
11815	chr1	92837021	92837300	+	0	NA	promoter-TSS (NR_000006)	promoter-TSS (NR_000006)	-129	NR_000006	6083		NR_000006	ENSG00000206680	SNORD21	RNU21|U21	small nucleolar RNA, C/D box 21	snoRNA
235301	chrX	42530221	42530750	+	0	NA	Intergenic	Intergenic	247678	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
53706	chr12	68577901	68578300	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-32799	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
57504	chr12	122101871	122102630	+	0	NA	intron (NM_014938, intron 1 of 16)	L1MB8|LINE|L1	23494	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
133671	chr2	127073321	127073580	+	0	NA	intron (NM_139345, intron 2 of 15)	intron (NM_139345, intron 2 of 15)	8615	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
46113	chr11	122881251	122881550	+	0	NA	Intergenic	AluJb|SINE|Alu	-1128	NM_199124	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
43977	chr11	94125301	94125630	+	0	NA	Intergenic	LTR12|LTR|ERV1	-3376	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
3087	chr1	12194271	12194500	+	0	NA	intron (NM_001066, intron 7 of 9)	intron (NM_001066, intron 7 of 9)	2672	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
224243	chr9	5850601	5850800	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-17583	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
219217	chr8	66680301	66680900	+	0	NA	non-coding (NR_161216, exon 3 of 3)	non-coding (NR_161216, exon 3 of 3)	13004	NM_001204173	100533105		NM_001204173	ENSG00000288602	C8orf44-SGK3	-	C8orf44-SGK3 readthrough	protein-coding
29828	chr10	72324821	72325300	+	0	NA	Intergenic	Intergenic	29859	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
182860	chr5	69707401	69707600	+	0	NA	intron (NR_027386, intron 1 of 5)	AluJr|SINE|Alu	3027	NR_027386	653188		NR_027386	ENSG00000290560	GUSBP3	GUSBP1|SMA3	GUSB pseudogene 3	pseudo
66903	chr14	65255671	65256030	+	0	NA	Intergenic	Intergenic	-33503	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
210594	chr7	100382021	100382880	+	0	NA	intron (NM_178273, intron 2 of 4)	LTR12C|LTR|ERV1	8963	NM_013439	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
56155	chr12	111394201	111394600	+	0	NA	Intergenic	Intergenic	-11523	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
202296	chr6	157217101	157217300	+	0	NA	Intergenic	Intergenic	106319	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
42781	chr11	72761801	72762000	+	0	NA	intron (NM_006645, intron 2 of 6)	AluSq2|SINE|Alu	-9511	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
60072	chr13	33722551	33723050	+	0	NA	Intergenic	Intergenic	-46006	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
224327	chr9	6754701	6754900	+	0	NA	intron (NM_001146696, intron 1 of 17)	AluJb|SINE|Alu	-3173	NM_001353999	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
167543	chr3	129321001	129321700	+	0	NA	intron (NR_026991, intron 3 of 4)	intron (NR_026991, intron 3 of 4)	-5064	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
85683	chr16	56422151	56422450	+	0	NA	intron (NM_001144, intron 1 of 13)	MER5A|DNA|hAT-Charlie	2689	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
184422	chr5	98927901	98929200	+	0	NA	promoter-TSS (NR_151718)	promoter-TSS (NR_151718)	-12	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
196447	chr6	43503321	43503780	+	0	NA	intron (NM_080604, intron 8 of 9)	intron (NM_080604, intron 8 of 9)	6793	NM_001012974	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
119014	chr19	38904171	38904850	+	0	NA	intron (NR_040515, intron 1 of 4).2	L1MEc|LINE|L1	4541	NR_040515	4793		NM_002503	ENSG00000104825	NFKBIB	IKBB|TRIP9	NFKB inhibitor beta	protein-coding
159094	chr3	12479671	12480500	+	0	NA	Intergenic	Intergenic	-4347	NM_001321277	80746		NM_025265	ENSG00000154743	TSEN2	PCH2B|SEN2|SEN2L	tRNA splicing endonuclease subunit 2	protein-coding
169150	chr3	156507471	156507630	+	0	NA	intron (NM_172160, intron 8 of 13)	intron (NM_172160, intron 8 of 13)	46575	NM_001308205	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
2688	chr1	10629771	10630450	+	0	NA	3' UTR (NM_004565, exon 9 of 9)	3' UTR (NM_004565, exon 9 of 9)	155160	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
82964	chr16	21926421	21927080	+	0	NA	Intergenic	AluY|SINE|Alu	-26611	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
83270	chr16	24005351	24005900	+	0	NA	intron (NM_212535, intron 3 of 16)	intron (NM_212535, intron 3 of 16)	169642	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
9803	chr1	53738751	53739900	+	0	NA	promoter-TSS (NM_001367484)	promoter-TSS (NM_001367484)	-161	NM_001367484	148979		NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
113724	chr19	10463751	10464150	+	0	NA	exon (NM_006202, exon 9 of 10)	exon (NM_006202, exon 9 of 10)	11018	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
38307	chr11	43685451	43685550	+	0	NA	intron (NM_016142, intron 1 of 10)	MIRb|SINE|MIR	4762	NM_016142	51144		NM_016142	ENSG00000149084	HSD17B12	KAR|SDR12C1	hydroxysteroid 17-beta dehydrogenase 12	protein-coding
142163	chr20	2831151	2831450	+	0	NA	Intergenic	AluSx|SINE|Alu	9355	NM_022760	64773		NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
25404	chr10	6535921	6536250	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	44191	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
69364	chr14	94009201	94009430	+	0	NA	TTS (NM_001351596)	TTS (NM_001351596)	12014	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
114395	chr19	12615171	12615330	+	0	NA	intron (NM_153358, intron 1 of 3)	AluJo|SINE|Alu	4330	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
205239	chr7	8018371	8018730	+	0	NA	intron (NM_138426, intron 2 of 7)	intron (NM_138426, intron 2 of 7)	49754	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
227592	chr9	92657851	92657950	+	0	NA	intron (NM_022755, intron 2 of 12)	intron (NM_022755, intron 2 of 12)	12231	NM_022755	64768		NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
154315	chr22	31970151	31971500	+	0	NA	promoter-TSS (NR_149128)	promoter-TSS (NR_149128)	2	NR_149128	105372999		NR_149128		LINC02558	-	long intergenic non-protein coding RNA 2558	ncRNA
135237	chr2	159497971	159498230	+	0	NA	intron (NM_001289975, intron 2 of 35)	intron (NM_001289975, intron 2 of 35)	-117194	NR_110588	643072		NR_110587	ENSG00000224152	BAZ2B-AS1	lnc-BAZ2B	BAZ2B antisense RNA 1	ncRNA
177176	chr4	108157151	108157250	+	0	NA	intron (NM_016269, intron 3 of 11)	(AC)n|Simple_repeat|Simple_repeat	9597	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
64301	chr14	23561301	23561500	+	0	NA	exon (NM_003917, exon 19 of 22)	exon (NM_003917, exon 19 of 22)	303	NR_110555	102724814		NR_110555	ENSG00000258727	AP1G2-AS1	-	AP1G2 antisense RNA 1	ncRNA
136781	chr2	181464921	181465330	+	0	NA	intron (NM_000885, intron 2 of 27)	intron (NM_000885, intron 2 of 27)	7739	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
216263	chr8	12440001	12440400	+	0	NA	intron (NR_040092, intron 2 of 5)	AluJr|SINE|Alu	3187	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
42823	chr11	72830851	72830950	+	0	NA	Intergenic	FLAM_A|SINE|Alu	16489	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
211796	chr7	107748771	107749130	+	0	NA	exon (NM_024814, exon 2 of 6)	exon (NM_024814, exon 2 of 6)	-4369	NR_144537	101927974		NR_144536	ENSG00000241764	CBLL1-AS1	-	CBLL1 antisense RNA 1	ncRNA
77144	chr15	79915901	79916100	+	0	NA	intron (NR_037653, intron 1 of 2)	LTR10E|LTR|ERV1	-6771	NR_028330	283687		NM_175898		ST20-AS1	C15orf37	ST20 antisense RNA 1	ncRNA
64972	chr14	36942351	36942450	+	0	NA	intron (NM_030631, intron 1 of 9)	intron (NM_030631, intron 1 of 9)	9991	NR_039725	100616280		NR_039725	ENSG00000266327	MIR4503	-	microRNA 4503	ncRNA
187311	chr5	141613071	141613500	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	5715	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
42992	chr11	73961871	73962030	+	0	NA	intron (NM_153614, intron 3 of 7)	AluSx|SINE|Alu	10924	NM_001377263	374407		NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
62638	chr13	101416301	101416830	+	0	NA	promoter-TSS (NM_001350751)	promoter-TSS (NM_001350751)	-57	NM_001350750	259232		NM_052867	ENSG00000102452	NALCN	CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding
26071	chr10	13097001	13097600	+	0	NA	intron (NM_001282658, intron 3 of 6)	intron (NM_001282658, intron 3 of 6)	2689	NM_001282658	83643		NM_031455	ENSG00000151468	CCDC3	-	coiled-coil domain containing 3	protein-coding
213776	chr7	140696351	140697680	+	0	NA	promoter-TSS (NR_024454)	promoter-TSS (NR_024454)	62	NR_024454	100134713		NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
208460	chr7	66983971	66984800	+	0	NA	Intergenic	AluJo|SINE|Alu	11201	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
20425	chr1	198241501	198241700	+	0	NA	intron (NM_133494, intron 2 of 9)	intron (NM_133494, intron 2 of 9)	84602	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
83750	chr16	28689471	28690200	+	0	NA	intron (NM_001199142, intron 1 of 20)	AluSc|SINE|Alu	1277	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
132138	chr2	101718851	101719980	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	21150	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
195933	chr6	41902101	41902550	+	0	NA	Intergenic	Intergenic	-6950	NM_001286554	25862		NM_018561	ENSG00000164663	USP49	-	ubiquitin specific peptidase 49	protein-coding
78976	chr15	101642021	101642580	+	0	NA	3' UTR (NM_078474, exon 6 of 6)	3' UTR (NM_078474, exon 6 of 6)	10081	NM_078474	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
38109	chr11	35226321	35226580	+	0	NA	intron (NM_001202555, intron 9 of 9)	intron (NM_001202555, intron 9 of 9)	63500	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
214483	chr7	150395071	150395430	+	0	NA	intron (NM_173680, intron 2 of 2)	intron (NM_173680, intron 2 of 2)	-10502	NR_027237	728743		NM_001080852	ENSG00000284691	LOC728743	-	zinc finger domain-containing protein LOC728743	protein-coding
172229	chr4	1330801	1332250	+	0	NA	intron (NM_005882, intron 4 of 7)	intron (NM_005882, intron 4 of 7)	-15683	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
180366	chr5	6966571	6966750	+	0	NA	Intergenic	L1PA2|LINE|L1	-138739	NR_036242	100422999		NR_036242	ENSG00000283420	MIR4278	-	microRNA 4278	ncRNA
20373	chr1	197975071	197975230	+	0	NA	Intergenic	L1MC4|LINE|L1	57778	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
162743	chr3	49048401	49049100	+	0	NA	intron (NM_001320580, intron 4 of 10)	AluY|SINE|Alu	-19352	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
215085	chr7	155001651	155001980	+	0	NA	intron (NM_007349, intron 1 of 20)	intron (NM_007349, intron 1 of 20)	1309	NM_007349	22976		NM_007349	ENSG00000157212	PAXIP1	CAGF28|CAGF29|PACIP1|PAXIP1L|PTIP|TNRC2	PAX interacting protein 1	protein-coding
95413	chr17	36080701	36080900	+	0	NA	Intergenic	Intergenic	8898	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
27481	chr10	32052701	32052900	+	0	NA	intron (NM_004521, intron 1 of 25)	intron (NM_004521, intron 1 of 25)	3625	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
187817	chr5	146750821	146751100	+	0	NA	intron (NM_001271899, intron 2 of 9)	L2b|LINE|L2	127797	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
15764	chr1	151162621	151163300	+	0	NA	intron (NM_001136543, intron 1 of 2)	L2c|LINE|L2	2942	NM_001136543	388695		NM_212551	ENSG00000163155	LYSMD1	SB145	LysM domain containing 1	protein-coding
174070	chr4	26959151	26959250	+	0	NA	intron (NM_020860, intron 3 of 11)	L2a|LINE|L2	98359	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
34981	chr11	510771	511130	+	0	NA	Intergenic	Intergenic	-3708	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
82098	chr16	14487451	14487830	+	0	NA	intron (NM_002582, intron 21 of 23)	intron (NM_002582, intron 21 of 23)	-117374	NR_131191	105447648		NR_131191	ENSG00000260009	LINC02130	-	long intergenic non-protein coding RNA 2130	ncRNA
176931	chr4	102826571	102828630	+	0	NA	promoter-TSS (NM_181892)	promoter-TSS (NM_181892)	-47	NM_181887	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
222792	chr8	142255571	142256300	+	0	NA	intron (NM_145003, intron 12 of 13)	(CATCAC)n|Simple_repeat|Simple_repeat	57579	NR_024378	619434		NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
134290	chr2	135876001	135877250	+	0	NA	promoter-TSS (NM_005915)	promoter-TSS (NM_005915)	-182	NM_005915	4175		NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
208791	chr7	73591801	73592200	+	0	NA	Intergenic	AluSg|SINE|Alu	-13421	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
68987	chr14	91478501	91478700	+	0	NA	intron (NM_001284281, intron 2 of 12)	intron (NM_001284281, intron 2 of 12)	31710	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
226157	chr9	63816801	63819100	+	0	NA	non-coding (NR_146625, exon 2 of 2)	non-coding (NR_146625, exon 2 of 2)	-1624	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
162644	chr3	48837121	48837380	+	0	NA	intron (NM_004157, intron 1 of 10)	AluJr|SINE|Alu	10624	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
207038	chr7	39413971	39414700	+	0	NA	intron (NM_001370959, intron 6 of 9)	CpG	-7989	NR_046711	100861520		NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	ncRNA
235807	chrX	49190621	49191800	+	0	NA	intron (NM_003179, intron 6 of 6)	intron (NM_003179, intron 6 of 6)	-4837	NM_006150	4007		NM_006150	ENSG00000012211	PRICKLE3	LMO6|LOAM|LOAS|Pk3	prickle planar cell polarity protein 3	protein-coding
105809	chr18	2948101	2948500	+	0	NA	intron (NM_001375809, intron 4 of 19)	intron (NM_001375809, intron 4 of 19)	-1677	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
37025	chr11	12105671	12106030	+	0	NA	Intergenic	Intergenic	-4726	NM_001282668	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
227747	chr9	93090351	93090850	+	0	NA	Intergenic	L1MB3|LINE|L1	-5617	NM_032310	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
55581	chr12	106314671	106315050	+	0	NA	intron (NM_152772, intron 3 of 9)	AluJr|SINE|Alu	12127	NM_152772	255394		NM_152772	ENSG00000166046	TCP11L2	-	t-complex 11 like 2	protein-coding
51589	chr12	52645121	52646330	+	0	NA	intron (NM_000423, intron 7 of 8)	intron (NM_000423, intron 7 of 8)	6486	NM_000423	3849		NM_000423	ENSG00000172867	KRT2	CK-2e|K2e|KRT2A|KRT2E|KRTE	keratin 2	protein-coding
168826	chr3	152241821	152242280	+	0	NA	Intergenic	L1MB3|LINE|L1	-1582	NM_001376839	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
158067	chr22	49957521	49957980	+	0	NA	Intergenic	Intergenic	-3022	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
189927	chr5	177384251	177384350	+	0	NA	promoter-TSS (NM_001167579)	promoter-TSS (NM_001167579)	-134	NM_001167579	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
102407	chr17	75601101	75601900	+	0	NA	exon (NM_001309242, exon 14 of 63)	exon (NM_001309242, exon 14 of 63)	13442	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
139152	chr2	219119471	219119730	+	0	NA	intron (NR_165304, intron 5 of 8)	intron (NR_165304, intron 5 of 8)	40955	NM_001377498	79840		NM_024782	ENSG00000187736	NHEJ1	XLF	non-homologous end joining factor 1	protein-coding
232409	chr9	136053401	136054200	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	41489	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
131691	chr2	97733601	97734350	+	0	NA	5' UTR (NM_207519, exon 1 of 6)	5' UTR (NM_207519, exon 1 of 6)	675	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
36383	chr11	3989571	3990500	+	0	NA	intron (NM_001382568, intron 2 of 11)	L1MB8|LINE|L1	-104650	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
224821	chr9	26942701	26943330	+	0	NA	intron (NM_001321546, intron 1 of 12)	intron (NM_001321546, intron 1 of 12)	-3975	NM_001099223	80173		NM_025103	ENSG00000096872	IFT74	BBS22|CCDC2|CMG-1|CMG1|JBTS40|SPGF58	intraflagellar transport 74	protein-coding
188237	chr5	151023801	151024400	+	0	NA	intron (NM_001329790, intron 2 of 5)	intron (NM_001329790, intron 2 of 5)	3509	NM_002084	2878		NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
216686	chr8	22160671	22160830	+	0	NA	intron (NM_001385659, intron 2 of 7)	intron (NM_001385659, intron 2 of 7)	-1048	NM_001317778	6440		NM_003018	ENSG00000168484	SFTPC	BRICD6|PSP-C|SFTP2|SMDP2|SP-C|SP5	surfactant protein C	protein-coding
159406	chr3	13479471	13481300	+	0	NA	promoter-TSS (NR_046690)	promoter-TSS (NR_046690)	79	NM_001136041	79885		NM_024827	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
30081	chr10	73885901	73886650	+	0	NA	Intergenic	Intergenic	-11684	NM_172171	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
116180	chr19	17441101	17441530	+	0	NA	intron (NM_001190844, intron 2 of 2)	MER20|DNA|hAT-Charlie	7353	NM_001190844	100130519		NM_001190844	ENSG00000188051	TMEM221	Jiraiya	transmembrane protein 221	protein-coding
34792	chr11	234351	234650	+	0	NA	intron (NM_001370324, intron 1 of 5)	AluY|SINE|Alu	1842	NM_001370314	23410		NM_012239	ENSG00000142082	SIRT3	SIR2L3	sirtuin 3	protein-coding
21524	chr1	205808371	205808530	+	0	NA	intron (NM_173854, intron 2 of 10)	intron (NM_173854, intron 2 of 10)	4748	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
176759	chr4	102335571	102335930	+	0	NA	intron (NM_022154, intron 1 of 7)	intron (NM_022154, intron 1 of 7)	9441	NM_022154	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
207974	chr7	55348501	55348700	+	0	NA	Intergenic	Intergenic	-16737	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
129423	chr2	69385121	69385530	+	0	NA	intron (NM_001244710, intron 1 of 19)	AluSq2|SINE|Alu	1902	NM_002056	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
41687	chr11	66629401	66629750	+	0	NA	3' UTR (NM_006328, exon 3 of 3)	3' UTR (NM_006328, exon 3 of 3)	-9042	NM_001198843	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
35611	chr11	1766801	1767000	+	0	NA	Intergenic	Intergenic	-2973	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
135169	chr2	157838401	157838800	+	0	NA	promoter-TSS (NM_001347667)	promoter-TSS (NM_001347667)	30	NM_001347667	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
31619	chr10	97377571	97377730	+	0	NA	intron (NM_015179, intron 15 of 33)	AluSq2|SINE|Alu	23690	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
177149	chr4	108129971	108130400	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	36612	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
205167	chr7	7416121	7417080	+	0	NA	intron (NM_001037763, intron 27 of 34)	intron (NM_001037763, intron 27 of 34)	119273	NM_001037763	340267		NM_001037763	ENSG00000215018	COL28A1	COL28	collagen type XXVIII alpha 1 chain	protein-coding
157860	chr22	48956571	48956730	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	89880	NR_038944	100128946		NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA
166357	chr3	112989621	112989930	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-1178	NM_138485	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
137272	chr2	195202351	195202700	+	0	NA	Intergenic	Intergenic	-454433	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
53223	chr12	62287851	62288150	+	0	NA	intron (NM_001351164, intron 1 of 21)	L1PA15-16|LINE|L1	27596	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
181201	chr5	39155151	39155450	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	64263	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
121432	chr19	47026151	47026650	+	0	NA	intron (NM_002517, intron 3 of 11)	L2a|LINE|L2	6563	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
147861	chr20	62816601	62817750	+	0	NA	intron (NM_001853, intron 1 of 31)	CpG	125	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
230405	chr9	128113271	128113430	+	0	NA	intron (NR_033374, intron 4 of 4)	L2a|LINE|L2	5384	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
96814	chr17	41932121	41932600	+	0	NA	intron (NM_031421, intron 1 of 11)	AluSp|SINE|Alu	1743	NR_110662	83538		NM_031421	ENSG00000204815	ODAD4	TTC25	outer dynein arm docking complex subunit 4	protein-coding
201945	chr6	151690171	151690580	+	0	NA	promoter-TSS (NM_001122742)	promoter-TSS (NM_001122742)	-152	NM_001122742	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
177092	chr4	108068501	108068900	+	0	NA	intron (NM_016269, intron 9 of 11)	intron (NM_016269, intron 9 of 11)	64036	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
151364	chr21	45820471	45820930	+	0	NA	intron (NM_001348243, intron 3 of 15)	intron (NM_001348243, intron 3 of 15)	15719	NR_038876	100129027		NR_038876		PCBP3-AS1	-	PCBP3 antisense RNA 1	ncRNA
193416	chr6	30450601	30451950	+	0	NA	Intergenic	CpG	-38234	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
149708	chr21	34029721	34030650	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-43393	NM_032476	64968		NM_032476	ENSG00000243927	MRPS6	C21orf101|MRP-S6|RPMS6|S6mt|bS6m	mitochondrial ribosomal protein S6	protein-coding
235586	chrX	47571071	47571630	+	0	NA	TTS (NM_006950)	TTS (NM_006950)	10145	NM_001654	369		NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
144539	chr20	35718301	35718930	+	0	NA	intron (NM_184234, intron 9 of 16)	AluSp|SINE|Alu	19210	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
92124	chr17	7612651	7613280	+	0	NA	intron (NM_004860, intron 1 of 16)	AluY|SINE|Alu	-1099	NM_001289114	6462		NM_001040	ENSG00000129214	SHBG	ABP|SBP|TEBG	sex hormone binding globulin	protein-coding
2079	chr1	7939271	7939930	+	0	NA	intron (NM_001561, intron 2 of 7)	MIR|SINE|MIR	1239	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
101195	chr17	65430071	65430430	+	0	NA	Intergenic	Intergenic	-27291	NR_131984	105827617		NR_131984	ENSG00000263520	LINC02563	CRAT40	long intergenic non-protein coding RNA 2563	ncRNA
79890	chr16	1546401	1546600	+	0	NA	intron (NM_024600, intron 2 of 2)	intron (NM_024600, intron 2 of 2)	12834	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
81344	chr16	4795501	4796050	+	0	NA	exon (NM_001253790, exon 3 of 5)	exon (NM_001253790, exon 3 of 5)	406	NM_001253794	440335		NM_001253790	ENSG00000267795	SMIM22	CASIMO1	small integral membrane protein 22	protein-coding
73218	chr15	41599771	41599930	+	0	NA	Intergenic	AluJr4|SINE|Alu	39878	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
112391	chr19	6099701	6099900	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	10700	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
152311	chr22	20340571	20340730	+	0	NA	intron (NR_136572, intron 1 of 6)	intron (NR_136572, intron 1 of 6)	1737	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
96037	chr17	39446721	39447180	+	0	NA	intron (NM_004774, intron 2 of 16)	intron (NM_004774, intron 2 of 16)	4313	NM_004774	5469		NM_004774	ENSG00000125686	MED1	CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2	mediator complex subunit 1	protein-coding
188010	chr5	149545321	149546530	+	0	NA	intron (NM_001892, intron 2 of 9)	AluSx|SINE|Alu	4440	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
180398	chr5	10333001	10333830	+	0	NA	Intergenic	CpG	-20280	NM_005885	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
147605	chr20	62075871	62076200	+	0	NA	Intergenic	L1MA7|LINE|L1	-10225	NM_003185	6874		NM_003185	ENSG00000130699	TAF4	MRD73|TAF(II)130|TAF(II)135|TAF2C|TAF2C1|TAF4A|TAFII-130|TAFII-135|TAFII130|TAFII135	TATA-box binding protein associated factor 4	protein-coding
184950	chr5	113032701	113033050	+	0	NA	intron (NM_001085377, intron 17 of 18)	MER41A|LTR|ERV1	56077	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
33428	chr10	118753371	118753530	+	0	NA	intron (NM_153810, intron 1 of 8)	intron (NM_153810, intron 1 of 8)	1520	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
7083	chr1	32040551	32041050	+	0	NA	intron (NR_073498, intron 8 of 8)	intron (NR_073498, intron 8 of 8)	26932	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
29730	chr10	72093171	72093330	+	0	NA	Intergenic	AluJb|SINE|Alu	-4218	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
28887	chr10	62811051	62811830	+	0	NA	TTS (NM_001136179)	TTS (NM_001136179)	4926	NM_001321037	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
172047	chr4	1011101	1013100	+	0	NA	promoter-TSS (NM_021923)	promoter-TSS (NM_021923)	-41	NM_001370296	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
170225	chr3	184177571	184177730	+	0	NA	intron (NM_001311198, intron 3 of 12)	intron (NM_001311198, intron 3 of 12)	2795	NM_004068	1173		NM_004068	ENSG00000161203	AP2M1	AP50|CLAPM1|MRD60|mu2	adaptor related protein complex 2 subunit mu 1	protein-coding
165012	chr3	71386901	71387100	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-82229	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
119881	chr19	41531071	41531880	+	0	NA	Intergenic	Intergenic	-4023	NR_110724	101927931		NR_110724	ENSG00000270164	LINC01480	-	long intergenic non-protein coding RNA 1480	ncRNA
79865	chr16	1502471	1502830	+	0	NA	exon (NM_001351846, exon 14 of 21)	exon (NM_001351846, exon 14 of 21)	9290	NM_016111	9894		NM_016111	ENSG00000100726	TELO2	CLK2|TEL2|YHFS	telomere maintenance 2	protein-coding
5305	chr1	25216971	25217580	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	15227	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
3630	chr1	16380721	16380980	+	0	NA	intron (NR_073500, intron 1 of 1)	AluSz|SINE|Alu	13608	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
74494	chr15	60017821	60018080	+	0	NA	Intergenic	LTR26|LTR|ERV1	13639	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
184600	chr5	103139101	103139610	+	0	NA	intron (NM_001276277, intron 5 of 30)	L1MA3|LINE|L1	19054	NM_001276277	23262		NM_015216	ENSG00000145725	PPIP5K2	CFAP160|DFNB100|HISPPD1|IP7K2|VIP2	diphosphoinositol pentakisphosphate kinase 2	protein-coding
142310	chr20	3470401	3471730	+	0	NA	promoter-TSS (NM_001323332)	promoter-TSS (NM_001323332)	47	NM_139322	8455		NM_012070	ENSG00000088812	ATRN	DPPT-L|MGCA	attractin	protein-coding
147955	chr20	62965501	62965700	+	0	NA	intron (NM_022082, intron 9 of 12)	intron (NM_022082, intron 9 of 12)	12891	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
75956	chr15	70474351	70474650	+	0	NA	Intergenic	Intergenic	31428	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
181080	chr5	36844521	36844780	+	0	NA	Intergenic	L2a|LINE|L2	32044	NR_046262	646719		NR_046262	ENSG00000285967	NIPBL-DT	NIPBL-AS|NIPBL-AS1	NIPBL divergent transcript	ncRNA
100708	chr17	63841901	63844600	+	0	NA	promoter-TSS (NM_001098426)	promoter-TSS (NM_001098426)	-565	NM_001098426	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
155820	chr22	39332571	39333130	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-13227	NM_001033853	6122		NM_000967	ENSG00000100316	RPL3	ASC-1|L3|TARBP-B|uL3	ribosomal protein L3	protein-coding
42465	chr11	69644271	69644600	+	0	NA	intron (NM_053056, intron 3 of 4)	intron (NM_053056, intron 3 of 4)	3279	NM_053056	595		NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
143181	chr20	24388651	24388950	+	0	NA	Intergenic	Intergenic	-80399	NM_001323606	79953		NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
99530	chr17	50352371	50353030	+	0	NA	intron (NM_022167, intron 1 of 10)	intron (NM_022167, intron 1 of 10)	6574	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
69874	chr14	99286721	99288150	+	0	NA	Intergenic	Intergenic	-15238	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
207127	chr7	42913271	42914100	+	0	NA	Intergenic	HAL1|LINE|L1	-1595	NM_001099858	79020		NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
137129	chr2	191025221	191025900	+	0	NA	intron (NR_136318, intron 1 of 2)	MSTB1-int|LTR|ERVL-MaLR	4034	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
102922	chr17	76574851	76574950	+	0	NA	intron (NM_006456, intron 2 of 8)	AluY|SINE|Alu	10960	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
216328	chr8	13131571	13131930	+	0	NA	intron (NM_182643, intron 5 of 17)	MIRb|SINE|MIR	1539	NM_001348084	10395		NM_006094	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
9059	chr1	44823071	44823880	+	0	NA	intron (NM_001166292, intron 19 of 22)	intron (NM_001166292, intron 19 of 22)	14993	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
128921	chr2	64331871	64332030	+	0	NA	Intergenic	Intergenic	-8809	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
177238	chr4	108623101	108623680	+	0	NA	intron (NM_033625, intron 4 of 5)	intron (NM_033625, intron 4 of 5)	2761	NM_001319234	6164		NM_000995	ENSG00000109475	RPL34	L34|eL34	ribosomal protein L34	protein-coding
189402	chr5	172760601	172761800	+	0	NA	intron (NR_161233, intron 3 of 3)	AluJr|SINE|Alu	5697	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
46096	chr11	122852601	122853100	+	0	NA	intron (NM_019604, intron 3 of 9)	L2c|LINE|L2	-9481	NM_001304782	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
129231	chr2	68250301	68251900	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	1432	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
2544	chr1	9728201	9729600	+	0	NA	TTS (NM_001009566)	TTS (NM_001009566)	37433	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
201671	chr6	149508221	149508880	+	0	NA	intron (NM_139126, intron 12 of 12)	intron (NM_139126, intron 12 of 12)	-23536	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
49584	chr12	27015721	27016580	+	0	NA	Intergenic	L1ME3G|LINE|L1	-1766	NM_016551	51768		NM_016551	ENSG00000064115	TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
232224	chr9	134374701	134375500	+	0	NA	intron (NM_002957, intron 1 of 9)	L2b|LINE|L2	-4195	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
42490	chr11	70177151	70177540	+	0	NA	intron (NM_018043, intron 22 of 25)	Charlie8|DNA|hAT-Charlie	-25951	NM_003824	8772		NM_003824	ENSG00000168040	FADD	GIG3|IMD90|MORT1	Fas associated via death domain	protein-coding
64470	chr14	24266001	24266200	+	0	NA	intron (NM_182836, intron 16 of 16)	MER102c|DNA|hAT-Charlie	-2923	NM_000359	7051		NM_000359	ENSG00000092295	TGM1	ARCI1|ICR2|KTG|LI|LI1|TGASE|TGK	transglutaminase 1	protein-coding
16652	chr1	155149651	155150050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9319	NM_153741	54344		NM_018973	ENSG00000179085	DPM3	CDG1O|MDDGB15|MDDGC15	dolichyl-phosphate mannosyltransferase subunit 3, regulatory	protein-coding
112846	chr19	7541571	7541730	+	0	NA	exon (NM_001166113, exon 12 of 35)	exon (NM_001166113, exon 12 of 35)	5933	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
215553	chr7	158800751	158801250	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	28509	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
187254	chr5	141430471	141430850	+	0	NA	5' UTR (NM_003735, exon 1 of 4)	5' UTR (NM_003735, exon 1 of 4)	153	NM_003735	26025		NM_003735	ENSG00000253159	PCDHGA12	CDH21|FIB3|PCDH-GAMMA-A12	protocadherin gamma subfamily A, 12	protein-coding
29627	chr10	71795301	71795580	+	0	NA	promoter-TSS (NM_001171934)	promoter-TSS (NM_001171934)	-331	NM_001171933	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
118624	chr19	37172221	37173350	+	0	NA	promoter-TSS (NM_152655)	promoter-TSS (NM_152655)	-44	NM_152655	199704		NM_152655	ENSG00000196967	ZNF585A	Zfp27	zinc finger protein 585A	protein-coding
7710	chr1	36090621	36091030	+	0	NA	intron (NM_017825, intron 1 of 5)	AluJb|SINE|Alu	1933	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
117432	chr19	19646371	19646850	+	0	NA	intron (NM_020410, intron 22 of 25)	intron (NM_020410, intron 22 of 25)	-2953	NM_001288999	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
51247	chr12	51011971	51012330	+	0	NA	intron (NM_001174125, intron 1 of 15)	intron (NM_001174125, intron 1 of 15)	-2935	NM_001379448	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
153180	chr22	23837871	23838030	+	0	NA	TTS (NM_001317946)	TTS (NM_001317946)	1056	NM_001135751	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
196468	chr6	43524401	43524800	+	0	NA	exon (NM_020750, exon 31 of 32)	exon (NM_020750, exon 31 of 32)	7511	NM_203290	9533		NM_004875	ENSG00000171453	POLR1C	AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3	RNA polymerase I and III subunit C	protein-coding
145821	chr20	45629571	45629730	+	0	NA	promoter-TSS (NM_080753)	promoter-TSS (NM_080753)	-89	NM_080753	140832		NM_080753	ENSG00000180305	WFDC10A	C20orf146|WAP10|dJ688G8.3	WAP four-disulfide core domain 10A	protein-coding
235782	chrX	49106921	49107250	+	0	NA	Intergenic	L1ME3B|LINE|L1	-5964	NM_007075	11152		NM_007075	ENSG00000196998	WDR45	JM5|NBIA4|NBIA5|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
105612	chr18	715551	716250	+	0	NA	Intergenic	L1ME2|LINE|L1	-3236	NR_148711	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
130245	chr2	84842971	84843330	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	37934	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
132027	chr2	100876021	100876480	+	0	NA	intron (NM_002518, intron 1 of 20)	intron (NM_002518, intron 1 of 20)	56111	NM_002518	4862		NM_002518	ENSG00000170485	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
202029	chr6	152981301	152981500	+	0	NA	intron (NM_001142522, intron 1 of 4)	intron (NM_001142522, intron 1 of 4)	1641	NM_012177	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
136302	chr2	174787721	174789000	+	0	NA	Intergenic	LTR107_Mam|LTR|LTR	-23888	NM_000079	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
3036	chr1	12143501	12144250	+	0	NA	3' UTR (NM_001243, exon 15 of 15)	3' UTR (NM_001243, exon 15 of 15)	-23068	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
172404	chr4	1791071	1791230	+	0	NA	Intergenic	Intergenic	-2143	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
91724	chr17	6647151	6647680	+	0	NA	intron (NM_016060, intron 3 of 3)	MER113|DNA|hAT-Charlie	4190	NM_016060	51003		NM_016060	ENSG00000108590	MED31	3110004H13Rik|CGI-125|SEP10|Soh1	mediator complex subunit 31	protein-coding
17405	chr1	156630721	156631180	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-9022	NR_135113	101928177		NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
5754	chr1	26480151	26481200	+	0	NA	Intergenic	Intergenic	8235	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
89281	chr16	88689421	88690080	+	0	NA	Intergenic	Intergenic	-3243	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
17891	chr1	160091671	160091900	+	0	NA	intron (NM_001320247, intron 6 of 6)	intron (NM_001320247, intron 6 of 6)	6834	NM_052868	93185		NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
178818	chr4	153530271	153531100	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	64325	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
120434	chr19	44113071	44114180	+	0	NA	promoter-TSS (NR_033341)	promoter-TSS (NR_033341)	226	NM_001321685	7768		NM_013362	ENSG00000256294	ZNF225	-	zinc finger protein 225	protein-coding
229307	chr9	120867351	120867450	+	0	NA	intron (NM_001286840, intron 6 of 14)	intron (NM_001286840, intron 6 of 14)	1511	NR_104601	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
8221	chr1	39682671	39683030	+	0	NA	intron (NM_001282397, intron 2 of 2)	intron (NM_001282397, intron 2 of 2)	8583	NM_016257	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
118723	chr19	38255521	38255830	+	0	NA	intron (NM_033256, intron 1 of 3)	intron (NM_033256, intron 1 of 3)	699	NM_001243947	94274		NM_033256	ENSG00000167641	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1 regulatory inhibitor subunit 14A	protein-coding
63159	chr13	113639951	113640250	+	0	NA	intron (NM_007111, intron 11 of 11)	intron (NM_007111, intron 11 of 11)	18098	NM_000705	496		NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting subunit beta	protein-coding
11540	chr1	91010351	91011080	+	0	NA	intron (NM_032186, intron 1 of 3)	intron (NM_032186, intron 1 of 3)	10793	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
80358	chr16	2511601	2512350	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1751	NM_001198569	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
171888	chr4	787021	787380	+	0	NA	intron (NM_006651, intron 3 of 3)	intron (NM_006651, intron 3 of 3)	-5352	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
204270	chr7	2640321	2640950	+	0	NA	intron (NM_025250, intron 1 of 13)	(GCCTG)n|Simple_repeat|Simple_repeat	8649	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
138771	chr2	216006221	216006750	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	7066	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
222568	chr8	140621251	140621550	+	0	NA	intron (NM_012154, intron 1 of 18)	L2b|LINE|L2	14233	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
150362	chr21	42200801	42201680	+	0	NA	intron (NM_207628, intron 1 of 16)	Charlie3|DNA|hAT-Charlie	1428	NM_207628	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
39335	chr11	59186001	59186580	+	0	NA	intron (NM_015177, intron 2 of 8)	intron (NM_015177, intron 2 of 8)	14158	NM_015177	23220		NM_015177	ENSG00000110042	DTX4	RNF155	deltex E3 ubiquitin ligase 4	protein-coding
17198	chr1	156248021	156249050	+	0	NA	promoter-TSS (NM_198406)	promoter-TSS (NM_198406)	-418	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
108258	chr18	63234201	63234400	+	0	NA	intron (NM_000633, intron 2 of 2)	L1PA10|LINE|L1	85469	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
196837	chr6	47245971	47246130	+	0	NA	intron (NM_014452, intron 4 of 5)	MSTA|LTR|ERVL-MaLR	63855	NM_014452	27242		NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
202247	chr6	156906121	156906380	+	0	NA	intron (NM_001371656, intron 5 of 20)	MER90a|LTR|ERV1	-126519	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
213572	chr7	139340051	139342950	+	0	NA	exon (NM_001244584, exon 1 of 11)	exon (NM_001244584, exon 1 of 11)	163	NM_197964	154791		NM_197964	ENSG00000164898	FMC1	C7orf55|HSPC268	formation of mitochondrial complex V assembly factor 1 homolog	protein-coding
200025	chr6	129671671	129672540	+	0	NA	intron (NM_033515, intron 1 of 14)	(CA)n|Simple_repeat|Simple_repeat	38072	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
85644	chr16	55842751	55843150	+	0	NA	Intergenic	Intergenic	-9854	NM_001025195	1066		NM_001266	ENSG00000198848	CES1	ACAT|CE-1|CEH|CES2|HMSE|HMSE1|PCE-1|REH|SES1|TGH|hCE-1	carboxylesterase 1	protein-coding
132249	chr2	102438171	102438600	+	0	NA	intron (NM_003853, intron 6 of 11)	intron (NM_003853, intron 6 of 11)	6096	NR_039930	100616157		NR_039930	ENSG00000264764	MIR4772	mir-4772	microRNA 4772	ncRNA
97079	chr17	42390071	42390430	+	0	NA	Intergenic	MIRc|SINE|MIR	-1808	NM_001384989	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
14626	chr1	145459521	145460600	+	0	NA	Intergenic	Intergenic	-54282	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
231175	chr9	129899471	129899630	+	0	NA	intron (NM_001363755, intron 15 of 15)	AluJo|SINE|Alu	29945	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
147348	chr20	58269351	58269450	+	0	NA	intron (NR_003505, intron 4 of 16)	intron (NR_003505, intron 4 of 16)	40039	NR_003505	55370		NM_018498		PPP4R1L	C20orf192|PPP4R1P1|PRO1085	protein phosphatase 4 regulatory subunit 1 like (pseudogene)	pseudo
234456	chrX	17682301	17682550	+	0	NA	intron (NM_001291868, intron 1 of 7)	intron (NM_001291868, intron 1 of 7)	46925	NM_001291868	4810		NM_198270	ENSG00000188158	NHS	CTRCT40|CXN|SCML1	NHS actin remodeling regulator	protein-coding
58802	chr12	132786001	132786300	+	0	NA	intron (NM_005895, intron 15 of 23)	intron (NM_005895, intron 15 of 23)	-24318	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
55996	chr12	110295821	110296080	+	0	NA	intron (NM_170665, intron 4 of 19)	MIR|SINE|MIR	14703	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
218649	chr8	57209601	57210200	+	0	NA	Intergenic	MER50-int|LTR|ERV1	-8376	NR_038235	100507651		NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
21216	chr1	204101921	204103030	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	29360	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
47755	chr12	6539401	6539600	+	0	NA	TTS (NM_001193457)	TTS (NM_001193457)	4236	NM_001256799	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
202323	chr6	157313951	157314300	+	0	NA	intron (NM_018452, intron 3 of 3)	intron (NM_018452, intron 3 of 3)	9394	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
7309	chr1	32520551	32521430	+	0	NA	Intergenic	AluSq2|SINE|Alu	-18437	NM_001040441	653121		NM_144621	ENSG00000160062	ZBTB8A	BOZF1|ZBTB8|ZNF916A	zinc finger and BTB domain containing 8A	protein-coding
54454	chr12	91876651	91877700	+	0	NA	Intergenic	Intergenic	264538	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
194693	chr6	33690251	33690350	+	0	NA	intron (NM_002224, intron 51 of 57)	intron (NM_002224, intron 51 of 57)	-7828	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
347	chr1	1006001	1006200	+	0	NA	Intergenic	Intergenic	-6003	NM_001142467	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
96489	chr17	40286101	40286580	+	0	NA	Intergenic	AluSg|SINE|Alu	-1539	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
184878	chr5	112588951	112589400	+	0	NA	Intergenic	L1P2|LINE|L1	-39261	NR_104672	102467214		NR_104672	ENSG00000250358	LINC02200	-	long intergenic non-protein coding RNA 2200	ncRNA
80196	chr16	2143971	2144130	+	0	NA	Intergenic	Intergenic	-4094	NM_001308053	25837		NM_014353	ENSG00000167964	RAB26	V46133	RAB26, member RAS oncogene family	protein-coding
17356	chr1	156502651	156503280	+	0	NA	Intergenic	Intergenic	-2190	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
18497	chr1	161724571	161724730	+	0	NA	intron (NM_001288831, intron 3 of 5)	intron (NM_001288831, intron 3 of 5)	1997	NM_001288830	127943		NM_152378	ENSG00000162746	FCRLB	FCRL2|FCRLM2|FCRLY|FREB-2|FREB2|FcRY	Fc receptor like B	protein-coding
54232	chr12	80249571	80249730	+	0	NA	intron (NM_001378610, intron 14 of 61)	L1PA2|LINE|L1	40436	NM_173591	283310		NM_173591	ENSG00000165899	OTOGL	C12orf64|DFNB84B	otogelin like	protein-coding
237144	chrX	107135621	107135930	+	0	NA	intron (NR_033676, intron 6 of 6)	Tigger7|DNA|TcMar-Tigger	-16953	NM_001171080	55285		NM_018301	ENSG00000089682	RBM41	-	RNA binding motif protein 41	protein-coding
1891	chr1	6443151	6443680	+	0	NA	intron (NM_031475, intron 5 of 12)	intron (NM_031475, intron 5 of 12)	-13519	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
204543	chr7	4971571	4971730	+	0	NA	Intergenic	Intergenic	-2335	NR_015449	441191		NR_015449	ENSG00000196204	RNF216P1	RNF216L|hCG2040556	ring finger protein 216 pseudogene 1	pseudo
77183	chr15	80173051	80173680	+	0	NA	intron (NM_001374377, intron 10 of 14)	intron (NM_001374377, intron 10 of 14)	20366	NM_000137	2184		NM_000137	ENSG00000103876	FAH	-	fumarylacetoacetate hydrolase	protein-coding
59850	chr13	30475171	30475330	+	0	NA	intron (NM_001370340, intron 1 of 4)	AluJb|SINE|Alu	-9273	NM_001363661	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
57713	chr12	122867251	122868580	+	0	NA	intron (NM_024667, intron 3 of 3)	intron (NM_024667, intron 3 of 3)	28209	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
172172	chr4	1227971	1228130	+	0	NA	intron (NM_001377193, intron 4 of 9)	CpG	17930	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
236754	chrX	78555421	78555700	+	0	NA	Intergenic	Intergenic	103768	NM_152694	203430		NM_152694	ENSG00000179300	RTL3	Mar3|Mart3|SIRH9|ZCCHC5|ZHC5	retrotransposon Gag like 3	protein-coding
169107	chr3	155555201	155555400	+	0	NA	intron (NM_001349250, intron 7 of 23)	MLT1J2|LTR|ERVL-MaLR	69497	NR_146955	100874036		NR_146955	ENSG00000242925	PLCH1-AS2	-	PLCH1 antisense RNA 2	ncRNA
94366	chr17	28915501	28915780	+	0	NA	intron (NM_020889, intron 7 of 8)	intron (NM_020889, intron 7 of 8)	-10635	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
220410	chr8	100267301	100267750	+	0	NA	intron (NM_183419, intron 5 of 9)	AluJr|SINE|Alu	34668	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
222596	chr8	141004971	141005630	+	0	NA	Intergenic	Intergenic	-3221	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
211747	chr7	107181251	107181650	+	0	NA	intron (NM_001244262, intron 2 of 10).2	AluJr|SINE|Alu	12447	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
194794	chr6	34228521	34229000	+	0	NA	Intergenic	AluSg|SINE|Alu	-8113	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
236903	chrX	86002301	86002800	+	0	NA	intron (NM_001320959, intron 2 of 14)	L1PA6|LINE|L1	44756	NM_001362518	1121		NM_000390	ENSG00000188419	CHM	DXS540|GGTA|HSD-32|REP-1|TCD	CHM Rab escort protein	protein-coding
201358	chr6	144665771	144665930	+	0	NA	intron (NM_001375323, intron 1 of 24)	MamRTE1|LINE|RTE-BovB	82702	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
32886	chr10	110151651	110151950	+	0	NA	non-coding (NR_164121, exon 1 of 3)	non-coding (NR_164121, exon 1 of 3)	180	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
72519	chr15	34101391	34102730	+	0	NA	promoter-TSS (NM_020154)	promoter-TSS (NM_020154)	-23	NM_152595	161779		NM_152595	ENSG00000182405	PGBD4	-	piggyBac transposable element derived 4	protein-coding
31311	chr10	92675301	92675500	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-14555	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
45387	chr11	118318051	118318350	+	0	NA	Intergenic	L2c|LINE|L2	13470	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
35319	chr11	1033571	1033730	+	0	NA	intron (NM_005961, intron 1 of 32)	intron (NM_005961, intron 1 of 32)	3068	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
213465	chr7	138979101	138979900	+	0	NA	intron (NM_001164665, intron 1 of 19)	MIRb|SINE|MIR	1889	NM_001164665	57670		NM_020910	ENSG00000122778	KIAA1549	RP86	KIAA1549	protein-coding
37870	chr11	33829021	33829740	+	0	NA	Intergenic	CpG	40498	NM_001142315	4005		NM_005574	ENSG00000135363	LMO2	LMO-2|RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
50815	chr12	49091211	49091700	+	0	NA	intron (NM_021044, intron 1 of 2)	intron (NM_021044, intron 1 of 2)	3346	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
91212	chr17	3921571	3922080	+	0	NA	Intergenic	Intergenic	-5360	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
77728	chr15	85710371	85711030	+	0	NA	intron (NM_007200, intron 19 of 36)	intron (NM_007200, intron 19 of 36)	48025	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
137994	chr2	201251751	201252770	+	0	NA	intron (NM_033355, intron 2 of 9)	L1MC2|LINE|L1	-5775	NM_001080125	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
13008	chr1	111186671	111186930	+	0	NA	3' UTR (NM_024901, exon 12 of 12)	3' UTR (NM_024901, exon 12 of 12)	13846	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
102044	chr17	74867221	74867780	+	0	NA	intron (NM_001258012, intron 2 of 11)	intron (NM_001258012, intron 2 of 11)	1253	NM_001258016	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
34596	chr10	133260901	133261500	+	0	NA	Intergenic	Intergenic	-13315	NR_108079	101927671		NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
236653	chrX	75746921	75747250	+	0	NA	Intergenic	(CCG)n|Simple_repeat|Simple_repeat	-4006	NR_030737	286495		NR_030737		TTC3P1	RNF105L|TTC3L	tetratricopeptide repeat domain 3 pseudogene 1	pseudo
29974	chr10	73732551	73732650	+	0	NA	TTS (NR_048575)	TTS (NR_048575)	2038	NR_048575	2749		NR_048575	ENSG00000291043	GLUD1P3	C10orf102|GLUDP3	glutamate dehydrogenase 1 pseudogene 3	pseudo
225539	chr9	35811401	35812580	+	0	NA	TTS (NM_032593)	TTS (NM_032593)	272	NM_001366760	26206		NM_012436	ENSG00000137098	SPAG8	BS-84|CILD28|CT142|HSD-1|SMP1|SPAG3|hSMP-1	sperm associated antigen 8	protein-coding
207292	chr7	44002421	44002680	+	0	NA	intron (NM_175064, intron 1 of 6)	intron (NM_175064, intron 1 of 6)	1610	NM_175064	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
24362	chr1	241517971	241518130	+	0	NA	intron (NM_000143, intron 1 of 9)	L2a|LINE|L2	1705	NM_000143	2271		NM_000143	ENSG00000091483	FH	FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1	fumarate hydratase	protein-coding
196496	chr6	43643801	43644000	+	0	NA	Intergenic	AluJb|SINE|Alu	-1130	NM_001193341	221421		NM_152732	ENSG00000172426	RSPH9	C6orf206|CILD12|MRPS18AL1	radial spoke head component 9	protein-coding
193325	chr6	30167121	30167380	+	0	NA	exon (NM_033229, exon 2 of 7).6	exon (NM_033229, exon 2 of 7).6	3704	NM_033229	89870		NM_033229	ENSG00000204610	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
40853	chr11	65060221	65060480	+	0	NA	Intergenic	Intergenic	-1797	NM_005468	10004		NM_005468	ENSG00000168060	NAALADL1	HILAP|I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase like 1	protein-coding
189174	chr5	171405551	171406750	+	0	NA	intron (NM_002520, intron 9 of 10)	intron (NM_002520, intron 9 of 10)	-13497	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
102450	chr17	75695671	75696130	+	0	NA	intron (NR_126036, intron 4 of 9)	intron (NR_126036, intron 4 of 9)	-25559	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
126956	chr2	35891901	35892500	+	0	NA	Intergenic	L1MA3|LINE|L1	420795	NR_039629	100616475		NR_039629	ENSG00000265301	MIR548AD	-	microRNA 548ad	ncRNA
53502	chr12	66352271	66352430	+	0	NA	intron (NM_001379345, intron 24 of 24)	L2a|LINE|L2	49805	NR_135080	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
152254	chr22	20237851	20239730	+	0	NA	Intergenic	Intergenic	10421	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
8130	chr1	39263721	39263980	+	0	NA	intron (NM_012090, intron 5 of 92)	AluY|SINE|Alu	-145223	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
41888	chr11	67251771	67252200	+	0	NA	intron (NM_012308, intron 17 of 20)	intron (NM_012308, intron 17 of 20)	11971	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
133945	chr2	130561771	130562330	+	0	NA	Intergenic	Intergenic	-8779	NR_033930	646743		NR_033930	ENSG00000290610	PRSS40B	-	serine protease 40B (pseudogene)	pseudo
39213	chr11	57547071	57548230	+	0	NA	intron (NM_001105565, intron 7 of 7)	intron (NM_001105565, intron 7 of 7)	10055	NM_001105565	219537		NM_001105565	ENSG00000214872	SMTNL1	CHASM	smoothelin like 1	protein-coding
22455	chr1	221439321	221439630	+	0	NA	Intergenic	Intergenic	-103179	NR_024236	400804		NR_024236	ENSG00000234754	LINC02817	C1orf140	long intergenic non-protein coding RNA 2817	ncRNA
79375	chr16	645751	646500	+	0	NA	intron (NR_138611, intron 1 of 3)	intron (NR_138611, intron 1 of 3)	3071	NR_138611	84331		NM_032371	ENSG00000172366	MCRIP2	C16orf14|FAM195A|c349E10.1	MAPK regulated corepressor interacting protein 2	protein-coding
60963	chr13	46592321	46592580	+	0	NA	intron (NM_015116, intron 1 of 18)	MIRb|SINE|MIR	39280	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
79423	chr16	694601	696550	+	0	NA	exon (NM_153350, exon 3 of 6)	exon (NM_153350, exon 3 of 6)	-5177	NM_032259	84219		NM_032259	ENSG00000127580	WDR24	C16orf21|JFP7	WD repeat domain 24	protein-coding
155571	chr22	38737201	38737930	+	0	NA	intron (NM_001199580, intron 18 of 18)	intron (NM_001199580, intron 18 of 18)	17901	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
429	chr1	1090971	1091130	+	0	NA	intron (NM_001330306, intron 4 of 11)	CpG	-16744	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
10589	chr1	67417651	67418230	+	0	NA	intron (NM_001018067, intron 6 of 7)	intron (NM_001018067, intron 6 of 7)	12462	NM_001018067	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
105998	chr18	7885771	7886130	+	0	NA	intron (NM_002845, intron 2 of 30)	intron (NM_002845, intron 2 of 30)	-60925	NM_001378146	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
235850	chrX	50060471	50060630	+	0	NA	intron (NM_001127899, intron 4 of 14)	L1PA2|LINE|L1	-7038	NM_000084	1184		NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENT1|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	chloride voltage-gated channel 5	protein-coding
126606	chr2	28787471	28787830	+	0	NA	intron (NM_206876, intron 6 of 8)	L2|LINE|L2	-23184	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
172068	chr4	1029451	1029550	+	0	NA	Intergenic	Intergenic	17036	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
61578	chr13	72643471	72643630	+	0	NA	Intergenic	Tigger18a|DNA|TcMar-Tigger	84079	NM_001071775	440145		NM_001071775	ENSG00000204899	MZT1	C13orf37|MOZART1	mitotic spindle organizing protein 1	protein-coding
35117	chr11	686801	687730	+	0	NA	intron (NM_001367390, intron 4 of 11)	intron (NM_001367390, intron 4 of 11)	7957	NM_021008	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
89806	chr16	89536051	89536630	+	0	NA	intron (NM_003119, intron 9 of 16)	intron (NM_003119, intron 9 of 16)	-24317	NM_001243131	6137		NM_000977	ENSG00000167526	RPL13	BBC1|D16S444E|D16S44E|L13|SEMDIST|eL13	ribosomal protein L13	protein-coding
41181	chr11	65628551	65628650	+	0	NA	exon (NM_032223, exon 23 of 35)	exon (NM_032223, exon 23 of 35)	-7710	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
45189	chr11	117327521	117329180	+	0	NA	intron (NM_014956, intron 1 of 32)	intron (NM_014956, intron 1 of 32)	496	NM_014956	22897		NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
36344	chr11	3904351	3904450	+	0	NA	intron (NM_001382571, intron 1 of 9)	L2|LINE|L2	48338	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
226100	chr9	62836951	62837700	+	0	NA	non-coding (NR_135128, exon 1 of 1)	non-coding (NR_135128, exon 1 of 1)	1021	NR_135128	100132249		NR_135128		LOC100132249	-	uncharacterized LOC100132249	ncRNA
145570	chr20	44475521	44476980	+	0	NA	intron (NM_001039199, intron 1 of 4)	intron (NM_001039199, intron 1 of 4)	376	NM_001261839	79183		NM_024331	ENSG00000124120	TTPAL	C20orf121	alpha tocopherol transfer protein like	protein-coding
164038	chr3	53275051	53275550	+	0	NA	Intergenic	Intergenic	-19186	NM_001258028	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
189620	chr5	176016251	176016550	+	0	NA	Intergenic	Intergenic	45655	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
23249	chr1	227796351	227796850	+	0	NA	Intergenic	Intergenic	8080	NR_168384	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
28688	chr10	60778141	60779350	+	0	NA	intron (NM_033379, intron 1 of 6)	CpG	267	NM_001786	983		NM_001786	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin dependent kinase 1	protein-coding
47275	chr12	1592171	1593190	+	0	NA	intron (NM_152441, intron 1 of 1)	intron (NM_152441, intron 1 of 1)	1901	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
125005	chr2	9543651	9544050	+	0	NA	intron (NM_001382778, intron 1 of 18)	L1MA4|LINE|L1	11980	NM_003183	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
124403	chr19	58407901	58409880	+	0	NA	non-coding (NR_134461, exon 1 of 5)	non-coding (NR_134461, exon 1 of 5)	216	NR_134461	201514		NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
196004	chr6	42006751	42007050	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluY|SINE|Alu	41994	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
196331	chr6	43164571	43164930	+	0	NA	Intergenic	FAM|SINE|Alu	-6519	NM_003131	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
46326	chr11	125429021	125429380	+	0	NA	intron (NM_001382333, intron 11 of 12)	intron (NM_001382333, intron 11 of 12)	-66014	NR_164146	403312		NM_203452	ENSG00000255537	LOC403312	-	putative uncharacterized protein MGC39545	ncRNA
74267	chr15	57138471	57138630	+	0	NA	intron (NM_207038, intron 5 of 19)	intron (NM_207038, intron 5 of 19)	-80880	NM_001306220	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
112879	chr19	7615871	7616030	+	0	NA	intron (NM_020902, intron 13 of 16)	AluSx|SINE|Alu	-1489	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
64063	chr14	22551701	22553180	+	0	NA	Intergenic	Intergenic	4622	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
144728	chr20	36577671	36577830	+	0	NA	intron (NM_001199535, intron 1 of 4)	AluSc|SINE|Alu	3196	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
175333	chr4	68351201	68351430	+	0	NA	Intergenic	AluJo|SINE|Alu	-1225	NM_001031732	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
227796	chr9	93139971	93140130	+	0	NA	Intergenic	Intergenic	-5799	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
205148	chr7	7190121	7190580	+	0	NA	intron (NM_020156, intron 1 of 3)	LTR65|LTR|ERV1	7806	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
14448	chr1	144406651	144406750	+	0	NA	Intergenic	Intergenic	-5876	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
16725	chr1	155249371	155249530	+	0	NA	intron (NM_198264, intron 6 of 8).2	MIR|SINE|MIR	-4823	NM_001005742	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
73142	chr15	41383251	41383350	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	19196	NR_045620	51103		NM_016013	ENSG00000137806	NDUFAF1	CGI-65|CGI65|CIA30|MC1DN11	NADH:ubiquinone oxidoreductase complex assembly factor 1	protein-coding
115477	chr19	15364851	15364950	+	0	NA	intron (NM_005858, intron 9 of 13)	FLAM_A|SINE|Alu	14887	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
211592	chr7	105805001	105805400	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	71385	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
186524	chr5	138359201	138359600	+	0	NA	intron (NM_016604, intron 1 of 23)	AluSx|SINE|Alu	6715	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
160463	chr3	30355601	30355800	+	0	NA	Intergenic	Intergenic	-163168	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
86619	chr16	67395671	67396030	+	0	NA	intron (NM_013304, intron 8 of 10)	intron (NM_013304, intron 8 of 10)	-2352	NM_016140	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
209056	chr7	74760451	74760750	+	0	NA	TTS (NM_001518)	TTS (NM_001518)	-13362	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
22937	chr1	225974471	225975230	+	0	NA	Intergenic	Intergenic	24493	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
233195	chr9	137209751	137210050	+	0	NA	intron (NM_014434, intron 2 of 13)	AluSx|SINE|Alu	4200	NM_001144028	27158		NM_014434	ENSG00000188566	NDOR1	CIAE1|NR1|bA350O14.9	NADPH dependent diflavin oxidoreductase 1	protein-coding
59418	chr13	25303871	25304030	+	0	NA	intron (NM_001008564, intron 1 of 14)	intron (NM_001008564, intron 1 of 14)	2325	NM_001008564	9818		NM_014089	ENSG00000139496	NUP58	NUP45|NUPL1|PRO2463	nucleoporin 58	protein-coding
81383	chr16	5084451	5085100	+	0	NA	exon (NM_001330504, exon 13 of 13)	exon (NM_001330504, exon 13 of 13)	12527	NM_001330504	56052		NM_019109	ENSG00000033011	ALG1	CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1	ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase	protein-coding
93787	chr17	20314901	20315300	+	0	NA	TTS (NM_001033553)	TTS (NM_001033553)	-6074	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
27765	chr10	35339501	35340630	+	0	NA	intron (NM_001282852, intron 1 of 8)	MIR|SINE|MIR	3191	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
110875	chr19	2629451	2630480	+	0	NA	promoter-TSS (NR_107004)	promoter-TSS (NR_107004)	-750	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
184657	chr5	107571801	107572350	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	98862	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
156724	chr22	41796651	41797150	+	0	NA	intron (NM_152513, intron 30 of 30)	AluSz6|SINE|Alu	-3779	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
110340	chr19	1875601	1877330	+	0	NA	TTS (NM_031213)	TTS (NM_031213)	9031	NM_001130111	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
158048	chr22	49941651	49942330	+	0	NA	Intergenic	Intergenic	-18782	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
62837	chr13	109781001	109781200	+	0	NA	intron (NM_003749, intron 1 of 1)	MER5B|DNA|hAT-Charlie	5483	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
63357	chr13	114037171	114037830	+	0	NA	intron (NM_001320822, intron 4 of 23).2	L1MB3|LINE|L1	40455	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
13173	chr1	112369571	112370030	+	0	NA	Intergenic	Intergenic	-26414	NM_018704	55917		NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
16917	chr1	155891721	155891980	+	0	NA	Intergenic	Intergenic	19068	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
168595	chr3	149131301	149131500	+	0	NA	intron (NM_001308258, intron 1 of 15)	Tigger1|DNA|TcMar-Tigger	1762	NM_032383	84343		NM_032383	ENSG00000163755	HPS3	BLOC2S1|SUTAL	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding
64609	chr14	30621301	30622660	+	0	NA	promoter-TSS (NM_001283031)	promoter-TSS (NM_001283031)	-274	NM_182835	23256		NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
154426	chr22	35342421	35344600	+	0	NA	intron (NR_156428, intron 11 of 13)	(CA)n|Simple_repeat|Simple_repeat	-6711	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
227768	chr9	93115551	93116900	+	0	NA	Intergenic	Intergenic	18026	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
1649	chr1	3801201	3801780	+	0	NA	Intergenic	LTR13|LTR|ERVK	-4992	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
92971	chr17	17114171	17114530	+	0	NA	intron (NM_015134, intron 3 of 22)	L1MB3|LINE|L1	71893	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
77830	chr15	88638071	88639500	+	0	NA	promoter-TSS (NM_002201)	promoter-TSS (NM_002201)	-231	NM_001303237	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
229801	chr9	125374321	125375100	+	0	NA	Intergenic	Intergenic	112884	NM_001354295	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
32201	chr10	101771951	101772550	+	0	NA	intron (NM_001206389, intron 3 of 4)	intron (NM_001206389, intron 3 of 4)	3864	NM_033164	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
27790	chr10	35463271	35463500	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	126511	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
219854	chr8	84183101	84183300	+	0	NA	promoter-TSS (NM_001354319)	promoter-TSS (NM_001354319)	-6	NM_001100392	138046		NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein like	protein-coding
175039	chr4	52816651	52816950	+	0	NA	Intergenic	L1HS|LINE|L1	26806	NR_040106	152578		NR_040106	ENSG00000250302	LINC01618	-	long intergenic non-protein coding RNA 1618	ncRNA
184907	chr5	112886951	112887580	+	0	NA	intron (NM_005669, intron 3 of 4)	intron (NM_005669, intron 3 of 4)	25978	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
92302	chr17	8114871	8115580	+	0	NA	intron (NM_021628, intron 4 of 15)	intron (NM_021628, intron 4 of 15)	3078	NM_001369446	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
76195	chr15	73521801	73522000	+	0	NA	intron (NM_001348772, intron 2 of 4)	L1M5|LINE|L1	47643	NR_103844	101241892		NR_103844	ENSG00000281183	NPTN-IT1	lncRNA-LET	NPTN intronic transcript 1	ncRNA
229665	chr9	124357121	124357380	+	0	NA	non-coding (NR_027406, exon 1 of 1)	non-coding (NR_027406, exon 1 of 1)	3777	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
156623	chr22	41591771	41592000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2045	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
90154	chr17	164521	164880	+	0	NA	intron (NM_003585, intron 2 of 8).2	intron (NM_003585, intron 2 of 8).2	16950	NM_003585	8447		NM_003585	ENSG00000272636	DOC2B	DOC2BL	double C2 domain beta	protein-coding
194288	chr6	32665701	32665930	+	0	NA	intron (NM_001243961, intron 1 of 5)	MIRb|SINE|MIR	842	NM_001243961	3119		NM_002123	ENSG00000179344	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
7332	chr1	32703851	32704150	+	0	NA	Intergenic	Intergenic	-1230	NM_001161708	81493		NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
105966	chr18	5167871	5168230	+	0	NA	intron (NM_001330553, intron 1 of 1)	intron (NM_001330553, intron 1 of 1)	29207	NM_001145194	642597		NM_001145194	ENSG00000231824	AKAIN1	C18orf42	A-kinase anchor inhibitor 1	protein-coding
203691	chr7	1030601	1031000	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	-2368	NR_146965	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
47622	chr12	6138521	6139180	+	0	NA	Intergenic	L2b|LINE|L2	-14180	NM_000552	7450		NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
121842	chr19	48171901	48172100	+	0	NA	exon (NM_199341, exon 2 of 4)	exon (NM_199341, exon 2 of 4)	1320	NM_199341	374920		NM_199341	ENSG00000185453	ZSWIM9	C19orf68	zinc finger SWIM-type containing 9	protein-coding
118170	chr19	35032751	35032850	+	0	NA	intron (NM_001321605, intron 2 of 5)	intron (NM_001321605, intron 2 of 5)	1529	NM_001321605	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
62014	chr13	84088601	84088800	+	0	NA	Intergenic	(TCTATA)n|Simple_repeat|Simple_repeat	-51902	NR_046871	100874128		NR_046871		LINC00333	NCRNA00333	long intergenic non-protein coding RNA 333	ncRNA
76160	chr15	72782571	72784600	+	0	NA	exon (NM_001365228, exon 1 of 4)	exon (NM_001365228, exon 1 of 4)	173	NM_001365224	83440		NM_031284	ENSG00000159322	ADPGK	2610017G09Rik|ADP-GK	ADP dependent glucokinase	protein-coding
193541	chr6	30605021	30605280	+	0	NA	intron (NM_001376195, intron 10 of 19).6	intron (NM_001376195, intron 10 of 19).6	12093	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
92748	chr17	14359271	14359900	+	0	NA	Intergenic	Intergenic	55845	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
218676	chr8	58257151	58257580	+	0	NA	intron (NR_105005, intron 6 of 7)	intron (NR_105005, intron 6 of 7)	14736	NR_105005	101929528		NR_105005	ENSG00000253281	LOC101929528	-	uncharacterized LOC101929528	ncRNA
172096	chr4	1052571	1052730	+	0	NA	Intergenic	Intergenic	40186	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
214158	chr7	144691271	144691630	+	0	NA	intron (NR_146934, intron 2 of 6)	L1PA15|LINE|L1	47448	NR_146936	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
145327	chr20	41091621	41092080	+	0	NA	intron (NM_003286, intron 8 of 20)	intron (NM_003286, intron 8 of 20)	-45693	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
76408	chr15	74724771	74724930	+	0	NA	intron (NM_001319217, intron 1 of 6)	intron (NM_001319217, intron 1 of 6)	678	NM_001319217	1543		NM_000499	ENSG00000140465	CYP1A1	AHH|AHRR|CP11|CYP1|CYPIA1|P1-450|P450-C|P450DX	cytochrome P450 family 1 subfamily A member 1	protein-coding
22306	chr1	213082951	213083250	+	0	NA	intron (NM_001349663, intron 3 of 9)	MLT1F-int|LTR|ERVL-MaLR	31859	NM_012424	26750		NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
20863	chr1	201999551	201999930	+	0	NA	TTS (NR_146472)	TTS (NR_146472)	-3384	NR_106798	102465443		NR_106798	ENSG00000275207	MIR6740	hsa-mir-6740	microRNA 6740	ncRNA
166300	chr3	112564451	112564750	+	0	NA	intron (NM_001348908, intron 2 of 4)	LTR5_Hs|LTR|ERVK	2555	NM_001348909	55032		NM_017945	ENSG00000138459	SLC35A5	-	solute carrier family 35 member A5	protein-coding
145243	chr20	38933321	38933780	+	0	NA	intron (NM_030919, intron 1 of 3)	intron (NM_030919, intron 1 of 3)	7133	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
44352	chr11	102438651	102440150	+	0	NA	intron (NM_052932, intron 2 of 4)	L1PA6|LINE|L1	13365	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
164974	chr3	71300221	71300480	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	4421	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
185771	chr5	132371551	132372300	+	0	NA	intron (NM_003060, intron 1 of 9)	intron (NM_003060, intron 1 of 9)	-2009	NR_110997	553103		NR_110997	ENSG00000233006	MIR3936HG	SLC22A5-AS1	MIR3936 host gene	ncRNA
132276	chr2	104854671	104854830	+	0	NA	5' UTR (NM_006236, exon 1 of 1)	5' UTR (NM_006236, exon 1 of 1)	635	NM_006236	5455		NM_006236	ENSG00000198914	POU3F3	BRN1|OTF8|SNIBFIS|brain-1|oct-8	POU class 3 homeobox 3	protein-coding
44616	chr11	108664451	108665580	+	0	NA	promoter-TSS (NM_004398)	promoter-TSS (NM_004398)	-54	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
73567	chr15	44429301	44429900	+	0	NA	intron (NM_016396, intron 1 of 12)	AluSg|SINE|Alu	1971	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
193025	chr6	28394051	28394150	+	0	NA	intron (NR_136510, intron 2 of 6)	intron (NR_136510, intron 2 of 6)	4666	NM_001368124	9753		NM_014724	ENSG00000158691	ZSCAN12	ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2	zinc finger and SCAN domain containing 12	protein-coding
43866	chr11	88324751	88325600	+	0	NA	3' UTR (NM_001114173, exon 4 of 4)	3' UTR (NM_001114173, exon 4 of 4)	12561	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
215559	chr7	158808551	158808850	+	0	NA	intron (NM_020728, intron 1 of 21)	MER44C|DNA|TcMar-Tigger	20809	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
59594	chr13	27583621	27584080	+	0	NA	intron (NM_153371, intron 1 of 9)	L2c|LINE|L2	36679	NM_153371	222484		NM_153371	ENSG00000139517	LNX2	PDZRN1	ligand of numb-protein X 2	protein-coding
87659	chr16	74590551	74591750	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluSx4|SINE|Alu	15964	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
52480	chr12	55973051	55974850	+	0	NA	promoter-TSS (NM_001252037)	promoter-TSS (NM_001252037)	37	NM_001252036	5869		NM_002868	ENSG00000111540	RAB5B	-	RAB5B, member RAS oncogene family	protein-coding
57476	chr12	122054251	122054830	+	0	NA	intron (NM_020993, intron 4 of 5)	intron (NM_020993, intron 4 of 5)	-8750	NR_135044	100506691		NR_135044	ENSG00000256546	LINC02985	-	long intergenic non-protein coding RNA 2985	ncRNA
199715	chr6	125314051	125314600	+	0	NA	Intergenic	Intergenic	-12358	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
125667	chr2	20106801	20107030	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-55287	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
20488	chr1	198641301	198642800	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	3010	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
56273	chr12	112107021	112107450	+	0	NA	intron (NM_024953, intron 1 of 23)	AluSg|SINE|Alu	1548	NM_024953	80018		NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N-alpha-acetyltransferase 25, NatB auxiliary subunit	protein-coding
167772	chr3	132951401	132951750	+	0	NA	Intergenic	L1HS|LINE|L1	-86713	NM_001136469	66000		NM_023943	ENSG00000144868	TMEM108	CT124|RTLN	transmembrane protein 108	protein-coding
102344	chr17	75501751	75502080	+	0	NA	exon (NM_020753, exon 18 of 20)	exon (NM_020753, exon 18 of 20)	3367	NR_106843	102466911		NR_106843	ENSG00000284595	MIR6785	hsa-mir-6785	microRNA 6785	ncRNA
111627	chr19	4125651	4125950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1678	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
204988	chr7	6423101	6423430	+	0	NA	intron (NM_139179, intron 8 of 14)	AluJo|SINE|Alu	24689	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
95572	chr17	36940371	36941030	+	0	NA	exon (NM_005568, exon 3 of 5)	exon (NM_005568, exon 3 of 5)	3225	NM_005568	3975		NM_005568	ENSG00000273706	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
13038	chr1	111226901	111227480	+	0	NA	promoter-TSS (NM_001025197)	promoter-TSS (NM_001025197)	-469	NM_001025197	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
137123	chr2	191017501	191017700	+	0	NA	Intergenic	Intergenic	-3350	NM_139266	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
84329	chr16	30180251	30180550	+	0	NA	Intergenic	AluJb|SINE|Alu	-3010	NM_001193333	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
104524	chr17	81243151	81243530	+	0	NA	Intergenic	Intergenic	3426	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
4892	chr1	23797001	23797350	+	0	NA	intron (NM_000403, intron 6 of 11)	intron (NM_000403, intron 6 of 11)	2372	NM_001127621	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
14374	chr1	144147051	144148230	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	100565	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
72271	chr15	30697251	30697580	+	0	NA	intron (NR_038255, intron 1 of 3)	L1ME4b|LINE|L1	38698	NR_038254	100288637		NR_038253	ENSG00000187951	LOC100288637	-	OTU deubiquitinase 7A pseudogene	pseudo
201058	chr6	142395371	142396130	+	0	NA	intron (NM_001032394, intron 8 of 24)	intron (NM_001032394, intron 8 of 24)	93743	NM_198569	57211		NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
117171	chr19	19347551	19348130	+	0	NA	intron (NM_015329, intron 13 of 18)	intron (NM_015329, intron 13 of 18)	27011	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
19962	chr1	184893851	184894150	+	0	NA	intron (NM_052966, intron 3 of 13)	intron (NM_052966, intron 3 of 13)	80508	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
56086	chr12	110661001	110662030	+	0	NA	intron (NM_001256413, intron 2 of 6)	intron (NM_001256413, intron 2 of 6)	27600	NM_032369	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
183505	chr5	79511801	79512650	+	0	NA	intron (NM_001277077, intron 1 of 5)	intron (NM_001277077, intron 1 of 5)	1611	NM_001277077	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
134825	chr2	148552171	148552330	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-92501	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
228498	chr9	100087301	100088330	+	0	NA	intron (NM_015051, intron 1 of 11)	intron (NM_015051, intron 1 of 11)	11185	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
221695	chr8	126869551	126869650	+	0	NA	Intergenic	Intergenic	-143554	NR_045262	100750225		NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1|PiHL	prostate cancer associated transcript 1	ncRNA
118729	chr19	38261101	38261930	+	0	NA	Intergenic	AluY|SINE|Alu	-3058	NM_021102	10653		NM_021102	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	serine peptidase inhibitor, Kunitz type 2	protein-coding
37088	chr11	13182971	13183680	+	0	NA	Intergenic	Intergenic	-93327	NM_001351804	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
14	chr1	25271	25430	+	0	NA	intron (NR_024540, intron 1 of 10)	intron (NR_024540, intron 1 of 10)	4020	NR_024540	653635		NR_024540		WASH7P	FAM39F|WASH5P	WASP family homolog 7, pseudogene	pseudo
197485	chr6	75603701	75604580	+	0	NA	intron (NM_015571, intron 1 of 23)	intron (NM_015571, intron 1 of 23)	2260	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
54202	chr12	79883021	79883280	+	0	NA	intron (NM_001143885, intron 2 of 25)	AluSg|SINE|Alu	30761	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
202023	chr6	152953201	152953400	+	0	NA	Intergenic	Intergenic	29741	NM_012177	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
24549	chr1	244858621	244859400	+	0	NA	intron (NM_031844, intron 5 of 13)	intron (NM_031844, intron 5 of 13)	-4793	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
25576	chr10	8026301	8027400	+	0	NA	Intergenic	Intergenic	25641	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
36478	chr11	6234171	6235500	+	0	NA	promoter-TSS (NM_032127)	promoter-TSS (NM_032127)	-199	NM_001098794	84067		NM_032127	ENSG00000051009	FHIP1B	C11orf56|FAM160A2|FHIP	FHF complex subunit HOOK interacting protein 1B	protein-coding
58832	chr12	132848651	132848750	+	0	NA	exon (NM_001161344, exon 13 of 18)	exon (NM_001161344, exon 13 of 18)	-19831	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
39456	chr11	60972541	60973230	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	1205	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
147048	chr20	53659921	53660830	+	0	NA	Intergenic	CpG	52021	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
132570	chr2	106490071	106490430	+	0	NA	intron (NM_001349727, intron 1 of 5)	MIRb|SINE|MIR	2886	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
200325	chr6	133891001	133891800	+	0	NA	intron (NM_198392, intron 1 of 2)	intron (NM_198392, intron 1 of 2)	2287	NM_198392	6943		NM_003206	ENSG00000118526	TCF21	POD1|bHLHa23	transcription factor 21	protein-coding
197618	chr6	82394871	82395130	+	0	NA	Intergenic	L1PA2|LINE|L1	30756	NM_001166392	7162		NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
180232	chr5	1571151	1571250	+	0	NA	TTS (NR_003263)	TTS (NR_003263)	23331	NR_003263	728609		NR_003263	ENSG00000291055	SDHAP3	SDHACL|SDHAL	SDHA pseudogene 3	pseudo
7686	chr1	35882771	35884600	+	0	NA	intron (NM_001317122, intron 1 of 18)	intron (NM_001317122, intron 1 of 18)	476	NM_012199	26523		NM_012199	ENSG00000092847	AGO1	EIF2C|EIF2C1|GERP95|NEDLBAS|Q99|hAgo1	argonaute RISC component 1	protein-coding
28556	chr10	50618801	50619630	+	0	NA	intron (NM_147156, intron 1 of 10)	L1ME5|LINE|L1	4741	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
141935	chr20	1250871	1251050	+	0	NA	intron (NM_001384358, intron 10 of 10)	HAL1|LINE|L1	-15334	NM_014723	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
110454	chr19	1998801	1999000	+	0	NA	intron (NM_017797, intron 1 of 8)	CpG	16814	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
164790	chr3	69288451	69288880	+	0	NA	intron (NM_015123, intron 4 of 22)	intron (NM_015123, intron 4 of 22)	97423	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
6162	chr1	27407021	27407680	+	0	NA	3' UTR (NM_001201404, exon 8 of 8)	3' UTR (NM_001201404, exon 8 of 8)	14728	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
120401	chr19	43763701	43764280	+	0	NA	Intergenic	Intergenic	-9028	NM_019108	56006		NM_019108	ENSG00000105771	SMG9	C19orf61|F17127_1|HBMS|NEDITPO	SMG9 nonsense mediated mRNA decay factor	protein-coding
90067	chr16	89974271	89974430	+	0	NA	intron (NR_003227, intron 1 of 9)	AluSq2|SINE|Alu	-1518	NM_145039	92806		NM_145039	ENSG00000293473	CENPBD1P	CENPBD1	CENPB DNA-binding domain containing 1, pseudogene	pseudo
204549	chr7	5041201	5041400	+	0	NA	Intergenic	Intergenic	-4560	NM_001204513	100533952		NM_001204513	ENSG00000272968	RBAK-RBAKDN	RBAK|RBAK-LOC389458|ZNF769|hRBaK	RBAK-RBAKDN readthrough	protein-coding
134547	chr2	143729751	143730830	+	0	NA	intron (NM_018460, intron 13 of 13)	intron (NM_018460, intron 13 of 13)	-206777	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
39305	chr11	58629671	58630080	+	0	NA	Intergenic	MIR3|SINE|MIR	7210	NM_000614	1270		NM_000614	ENSG00000242689	CNTF	HCNTF	ciliary neurotrophic factor	protein-coding
183164	chr5	75235951	75237330	+	0	NA	exon (NM_001372053, exon 1 of 26)	exon (NM_001372053, exon 1 of 26)	238	NM_001372053	256006		NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
228466	chr9	99849751	99850250	+	0	NA	intron (NM_173200, intron 8 of 8)	intron (NM_173200, intron 8 of 8)	28115	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
150062	chr21	37391871	37392030	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	24393	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
144112	chr20	33914771	33915230	+	0	NA	Intergenic	Intergenic	-78911	NM_007367	22913		NM_007367	ENSG00000125970	RALY	HNRPCL2|P542	RALY heterogeneous nuclear ribonucleoprotein	protein-coding
229007	chr9	113655171	113655600	+	0	NA	Intergenic	Intergenic	61256	NM_001276262	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
219475	chr8	73654001	73654750	+	0	NA	intron (NM_001164383, intron 1 of 9)	AluJb|SINE|Alu	92465	NM_001164380	27067		NM_014393	ENSG00000040341	STAU2	39K2|39K3	staufen double-stranded RNA binding protein 2	protein-coding
17435	chr1	156668201	156668600	+	0	NA	TTS (NM_006617)	TTS (NM_006617)	9007	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
132243	chr2	102420551	102420850	+	0	NA	intron (NM_003853, intron 2 of 11)	MER5B|DNA|hAT-Charlie	1910	NM_003853	8807		NM_003853	ENSG00000115607	IL18RAP	ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB	interleukin 18 receptor accessory protein	protein-coding
45986	chr11	121484951	121485880	+	0	NA	intron (NM_003105, intron 3 of 47)	MIRb|SINE|MIR	-3626	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
170890	chr3	193604771	193605180	+	0	NA	intron (NM_001354664, intron 2 of 29)	MER57A-int|LTR|ERV1	11767	NM_001354664	4976		NM_015560	ENSG00000198836	OPA1	BERHS|MGM1|MTDPS14|NPG|NTG|largeG	OPA1 mitochondrial dynamin like GTPase	protein-coding
145276	chr20	41003051	41004000	+	0	NA	intron (NR_145525, intron 1 of 2)	MIR3|SINE|MIR	22812	NR_145525	100128988		NR_145524		LOC100128988	-	uncharacterized LOC100128988	ncRNA
136002	chr2	172343751	172343850	+	0	NA	Intergenic	Intergenic	-83536	NM_001316306	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
172431	chr4	1864751	1865100	+	0	NA	Intergenic	Intergenic	-6468	NM_001042424	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
218643	chr8	57000321	57001030	+	0	NA	Intergenic	AluSz|SINE|Alu	-6808	NM_017813	54928		NM_017813	ENSG00000104331	BPNT2	GPAPP|IMP 3|IMP-3|IMPA3|IMPAD1	3'(2'), 5'-bisphosphate nucleotidase 2	protein-coding
194699	chr6	33696601	33697880	+	0	NA	promoter-TSS (NR_037498)	promoter-TSS (NR_037498)	-888	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
23021	chr1	226332971	226333830	+	0	NA	Intergenic	Intergenic	-23633	NM_001270410	286826		NM_173083	ENSG00000183814	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 DREAM MuvB core complex component	protein-coding
202329	chr6	157380701	157382630	+	0	NA	5' UTR (NM_153746, exon 1 of 9)	5' UTR (NM_153746, exon 1 of 9)	475	NM_024630	79683		NM_024630	ENSG00000175048	ZDHHC14	NEW1CP	zinc finger DHHC-type palmitoyltransferase 14	protein-coding
132327	chr2	105397401	105397730	+	0	NA	intron (NM_001374399, intron 1 of 6)	intron (NM_001374399, intron 1 of 6)	1486	NM_001318895	2274		NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
164461	chr3	59732021	59732280	+	0	NA	Intergenic	Intergenic	-73653	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
106657	chr18	23031471	23031730	+	0	NA	Intergenic	Intergenic	97724	NM_203291	5932		NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JAWAD|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding
236659	chrX	76144621	76146110	+	0	NA	Intergenic	CpG	-27564	NM_001300888	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
98552	chr17	47684351	47684950	+	0	NA	3' UTR (NM_001276453, exon 21 of 21)	3' UTR (NM_001276453, exon 21 of 21)	-10614	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
71657	chr14	106843471	106845130	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	6699	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
225533	chr9	35758621	35759100	+	0	NA	TTS (NM_001080496)	TTS (NM_001080496)	-4584	NM_001044264	692094		NM_001044264	ENSG00000215183	MSMP	PSMP	microseminoprotein, prostate associated	protein-coding
33485	chr10	119089551	119089850	+	0	NA	Intergenic	L2a|LINE|L2	-8883	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
94967	chr17	32197071	32197230	+	0	NA	intron (NR_110083, intron 11 of 20)	L2c|LINE|L2	-45579	NR_002222	503640		NR_002222		ARGFXP2	-	arginine-fifty homeobox pseudogene 2	pseudo
7713	chr1	36092401	36092600	+	0	NA	exon (NM_017825, exon 5 of 6)	exon (NM_017825, exon 5 of 6)	3608	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
178195	chr4	142404121	142404430	+	0	NA	intron (NM_001385334, intron 5 of 24)	intron (NM_001385334, intron 5 of 24)	-1142	NR_169624	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
127452	chr2	42193621	42193980	+	0	NA	intron (NM_019063, intron 1 of 22)	AluJb|SINE|Alu	-23569	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
17957	chr1	160427551	160428000	+	0	NA	3' UTR (NM_020335, exon 8 of 8)	3' UTR (NM_020335, exon 8 of 8)	27211	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
153705	chr22	29278021	29278300	+	0	NA	exon (NM_013986, exon 6 of 18)	exon (NM_013986, exon 6 of 18)	9892	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
41463	chr11	66118971	66119780	+	0	NA	intron (NM_018026, intron 1 of 23)	MER58B|DNA|hAT-Charlie	49103	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
236909	chrX	86294951	86295130	+	0	NA	intron (NM_001139515, intron 1 of 11)	L1PA3|LINE|L1	32072	NM_001139515	117154		NM_053281	ENSG00000126733	DACH2	-	dachshund family transcription factor 2	protein-coding
98044	chr17	45435901	45436400	+	0	NA	non-coding (NR_027782, exon 11 of 11)	non-coding (NR_027782, exon 11 of 11)	-3280	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
106907	chr18	25921601	25921900	+	0	NA	Intergenic	Intergenic	168863	NM_001007559	6760		NM_005637	ENSG00000141380	SS18	SMARCL1|SSXT|SYT	SS18 subunit of BAF chromatin remodeling complex	protein-coding
60345	chr13	40788251	40788600	+	0	NA	Intergenic	AluSx|SINE|Alu	-1186	NM_014252	10166		NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|LNC-HC|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
68718	chr14	90759451	90759750	+	0	NA	intron (NM_001010854, intron 3 of 19)	intron (NM_001010854, intron 3 of 19)	56817	NM_001320421	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
218744	chr8	58850901	58851430	+	0	NA	intron (NM_014729, intron 4 of 8)	(TC)n|Simple_repeat|Simple_repeat	-191312	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
216028	chr8	9150351	9151100	+	0	NA	promoter-TSS (NM_024607).2	promoter-TSS (NM_024607).2	-67	NM_024607	79660		NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
99500	chr17	50195951	50197430	+	0	NA	intron (NM_000088, intron 11 of 50)	intron (NM_000088, intron 11 of 50)	4941	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
219562	chr8	78665501	78666700	+	0	NA	promoter-TSS (NR_156423)	promoter-TSS (NR_156423)	11	NM_001362969	51101		NM_016010	ENSG00000104427	ZC2HC1A	C8orf70|CGI-62|FAM164A	zinc finger C2HC-type containing 1A	protein-coding
55397	chr12	104465001	104466000	+	0	NA	intron (NM_018413, intron 1 of 2)	L2c|LINE|L2	8552	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
129204	chr2	68206101	68207250	+	0	NA	intron (NM_000945, intron 2 of 5)	L2b|LINE|L2	45857	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
119251	chr19	39500151	39501200	+	0	NA	intron (NM_016941, intron 3 of 7)	intron (NM_016941, intron 3 of 7)	1728	NM_203486	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
166000	chr3	108132321	108132980	+	0	NA	intron (NR_110028, intron 1 of 2)	intron (NR_110028, intron 1 of 2)	6829	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
23856	chr1	234769971	234770830	+	0	NA	Intergenic	Intergenic	-10344	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
22336	chr1	214310801	214311200	+	0	NA	intron (NM_020197, intron 2 of 11)	intron (NM_020197, intron 2 of 11)	29841	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
51191	chr12	50354071	50354230	+	0	NA	exon (NM_001145475, exon 4 of 8)	exon (NM_001145475, exon 4 of 8)	42459	NM_001145475	121006		NM_001145475	ENSG00000185958	FAM186A	-	family with sequence similarity 186 member A	protein-coding
55199	chr12	101671071	101671800	+	0	NA	intron (NM_206821, intron 22 of 28)	intron (NM_206821, intron 22 of 28)	-26205	NM_020244	56994		NM_020244	ENSG00000111666	CHPT1	CPT|CPT1	choline phosphotransferase 1	protein-coding
224138	chr9	4744421	4744950	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2642	NM_001199853	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
172396	chr4	1773321	1773850	+	0	NA	Intergenic	Intergenic	-19708	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
126111	chr2	25988401	25989000	+	0	NA	Intergenic	L2b|LINE|L2	-6203	NM_002254	3797		NM_002254	ENSG00000084731	KIF3C	-	kinesin family member 3C	protein-coding
76438	chr15	74802701	74802900	+	0	NA	3' UTR (NM_001354988, exon 15 of 15)	3' UTR (NM_001354988, exon 15 of 15)	-10035	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
145027	chr20	38038171	38038680	+	0	NA	intron (NM_021215, intron 1 of 6)	AluSx1|SINE|Alu	4679	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
150178	chr21	39208851	39209300	+	0	NA	intron (NM_033656, intron 36 of 40)	LTR45C|LTR|ERV1	-25561	NM_203433	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
80999	chr16	4082521	4082900	+	0	NA	intron (NM_001116, intron 2 of 10)	(CACA)n|Simple_repeat|Simple_repeat	33732	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
51898	chr12	53618171	53619080	+	0	NA	intron (NR_159377, intron 1 of 14)	intron (NR_159377, intron 1 of 14)	7365	NM_001366562	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
197992	chr6	90067451	90067750	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	173131	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
46927	chr11	134308151	134308650	+	0	NA	intron (NM_001080407, intron 10 of 19)	(CCA)n|Simple_repeat|Simple_repeat	-23474	NM_138342	89944		NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	galactosidase beta 1 like 2	protein-coding
179886	chr5	662051	662550	+	0	NA	3' UTR (NM_007030, exon 4 of 4)	3' UTR (NM_007030, exon 4 of 4)	31052	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
134792	chr2	147847801	147848400	+	0	NA	intron (NM_001278579, intron 2 of 11)	intron (NM_001278579, intron 2 of 11)	3071	NM_001616	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
222290	chr8	133466121	133466980	+	0	NA	intron (NM_173344, intron 5 of 9)	intron (NM_173344, intron 5 of 9)	105337	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
175339	chr4	68435771	68436150	+	0	NA	Intergenic	Intergenic	-11503	NM_014058	28983		NM_014058	ENSG00000087128	TMPRSS11E	DESC1|TMPRSS11E2	transmembrane serine protease 11E	protein-coding
92332	chr17	8152201	8153290	+	0	NA	promoter-TSS (NM_002616)	promoter-TSS (NM_002616)	-341	NM_002616	5187		NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian regulator 1	protein-coding
93852	chr17	21001771	21002180	+	0	NA	3' UTR (NM_015276, exon 13 of 13)	3' UTR (NM_015276, exon 13 of 13)	41036	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
71912	chr15	22769801	22770430	+	0	NA	intron (NM_001365371, intron 9 of 12)	(CTC)n|Simple_repeat|Simple_repeat	6017	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
32231	chr10	101827001	101827650	+	0	NA	TTS (NM_173197)	TTS (NM_173197)	8257	NR_045118	100289509		NR_045118		KCNIP2-AS1	-	KCNIP2 antisense RNA 1	ncRNA
192947	chr6	27809831	27811430	+	0	NA	TTS (NM_003536)	TTS (NM_003536)	579	NM_003536	8357		NM_003536	ENSG00000278828	H3C10	H3/k|H3C1|H3C11|H3C12|H3C2|H3C3|H3C4|H3C6|H3C7|H3C8|H3F1K|H3FK|HIST1H3H	H3 clustered histone 10	protein-coding
205421	chr7	16651371	16651780	+	0	NA	intron (NM_001159767, intron 1 of 11)	intron (NM_001159767, intron 1 of 11)	5394	NM_014038	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
52266	chr12	54498421	54499080	+	0	NA	promoter-TSS (NM_001184976)	promoter-TSS (NM_001184976)	-28	NM_001184976	3071		NM_005337	ENSG00000123338	NCKAP1L	HEM1|IMD72	NCK associated protein 1 like	protein-coding
69985	chr14	99968801	99969030	+	0	NA	Intergenic	MIR3|SINE|MIR	-2507	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
64639	chr14	31214301	31214700	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-6707	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
160469	chr3	30475251	30475550	+	0	NA	Intergenic	Intergenic	-43468	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
190691	chr6	156751	157390	+	0	NA	Intergenic	Intergenic	-8911	NR_109817	107105278		NR_109817		SEPTIN14P6	C6orf88|LINC00266-3|NCRNA00266-3|NCRNA00266C|SEPT14P6|dJ24O22.2	septin 14 pseudogene 6	pseudo
77800	chr15	88246721	88247000	+	0	NA	intron (NM_001012338, intron 3 of 19)	intron (NM_001012338, intron 3 of 19)	-5870	NR_038229	283738		NR_038229	ENSG00000260305	NTRK3-AS1	-	NTRK3 antisense RNA 1	ncRNA
166281	chr3	112493701	112494380	+	0	NA	intron (NM_001085357, intron 1 of 3)	AluY|SINE|Alu	5432	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
229834	chr9	125785221	125785680	+	0	NA	intron (NR_024122, intron 2 of 7)	MLT2B3|LTR|ERVL	37267	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
17612	chr1	156920201	156921000	+	0	NA	promoter-TSS (NM_144702)	promoter-TSS (NM_144702)	-32	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
165737	chr3	105676671	105676980	+	0	NA	intron (NR_135812, intron 16 of 18)	THE1D|LTR|ERVL-MaLR	190766	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
62807	chr13	109750801	109751200	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	22726	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
200541	chr6	136258701	136258900	+	0	NA	3' UTR (NM_001077440, exon 12 of 12)	3' UTR (NM_001077440, exon 12 of 12)	-8489	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
84099	chr16	29630451	29630550	+	0	NA	Intergenic	MIR|SINE|MIR	-16783	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
158348	chr22	50458371	50458600	+	0	NA	intron (NM_002972, intron 28 of 40)	intron (NM_002972, intron 28 of 40)	16550	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
82385	chr16	16104171	16104730	+	0	NA	intron (NM_004996, intron 20 of 30)	LTR12C|LTR|ERV1	119021	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
110040	chr19	1464421	1464680	+	0	NA	intron (NM_005883, intron 14 of 14)	AluSx|SINE|Alu	11566	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
124409	chr19	58437971	58438330	+	0	NA	intron (NM_003433, intron 1 of 2)	intron (NM_003433, intron 1 of 2)	2003	NM_003433	7691		NM_003433	ENSG00000131849	ZNF132	pHZ-12	zinc finger protein 132	protein-coding
86220	chr16	58110001	58110200	+	0	NA	Intergenic	Intergenic	19281	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
132821	chr2	110569951	110570250	+	0	NA	intron (NM_001384363, intron 1 of 22).2	AluSx1|SINE|Alu	6800	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
141502	chr2	241126671	241126830	+	0	NA	exon (NM_001252122, exon 10 of 18)	exon (NM_001252122, exon 10 of 18)	22722	NM_001252122	23178		NM_015148	ENSG00000115687	PASK	PASKIN|STK37	PAS domain containing serine/threonine kinase	protein-coding
358	chr1	1017151	1018180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2455	NM_001305275	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
112873	chr19	7611171	7612130	+	0	NA	intron (NM_020902, intron 10 of 16)	intron (NM_020902, intron 10 of 16)	-5789	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
77461	chr15	84424421	84424880	+	0	NA	TTS (NR_120378).2	TTS (NR_120378).2	2032	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
209356	chr7	76272721	76273180	+	0	NA	intron (NM_001291831, intron 11 of 15)	intron (NM_001291831, intron 11 of 15)	-29723	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
22907	chr1	225881651	225883930	+	0	NA	promoter-TSS (NM_014698)	promoter-TSS (NM_014698)	-410	NM_014698	9725		NM_014698	ENSG00000196187	TMEM63A	HLD19|KIAA0792	transmembrane protein 63A	protein-coding
78867	chr15	100520351	100520650	+	0	NA	intron (NM_001290341, intron 3 of 13)	intron (NM_001290341, intron 3 of 13)	8450	NM_001378789	204219		NM_178842	ENSG00000154227	CERS3	ARCI9|LASS3	ceramide synthase 3	protein-coding
48566	chr12	10279101	10279400	+	0	NA	intron (NM_001351060, intron 2 of 8)	L1PA15|LINE|L1	-25196	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
129810	chr2	71530771	71530930	+	0	NA	intron (NM_003494, intron 13 of 54)	intron (NM_003494, intron 13 of 54)	64151	NM_001130987	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
41070	chr11	65502401	65503400	+	0	NA	non-coding (NR_002819, exon 1 of 1)	non-coding (NR_002819, exon 1 of 1)	-3217	NR_144569	109136578		NR_144569	ENSG00000274072	MASCRNA	-	MALAT1-associated small cytoplasmic RNA	scRNA
162465	chr3	48503771	48505030	+	0	NA	promoter-TSS (NM_001272068)	promoter-TSS (NM_001272068)	-151	NM_001272065	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
174435	chr4	39635801	39636130	+	0	NA	intron (NM_001317896, intron 1 of 5)	AluSz|SINE|Alu	2900	NM_001317896	201895		NM_174921	ENSG00000163683	SMIM14	C4orf34	small integral membrane protein 14	protein-coding
30527	chr10	79358151	79358250	+	0	NA	Intergenic	AluJo|SINE|Alu	10731	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
175033	chr4	52716271	52716430	+	0	NA	intron (NR_145129, intron 4 of 4)	intron (NR_145129, intron 4 of 4)	3101	NR_003016	677810		NR_003016	ENSG00000212588	SNORA26	HBI-6	small nucleolar RNA, H/ACA box 26	snoRNA
137770	chr2	199455701	199456430	+	0	NA	non-coding (NR_134967, exon 2 of 5)	non-coding (NR_134967, exon 2 of 5)	1874	NM_001172509	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
196031	chr6	42035251	42036180	+	0	NA	intron (NM_001287434, intron 1 of 4)	AluSg7|SINE|Alu	13179	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
29885	chr10	73038671	73038830	+	0	NA	intron (NM_001017962, intron 9 of 14)	AluYa5|SINE|Alu	58224	NM_001142596	5033		NM_000917	ENSG00000122884	P4HA1	P4HA	prolyl 4-hydroxylase subunit alpha 1	protein-coding
85467	chr16	50679121	50679800	+	0	NA	intron (NM_001144972, intron 1 of 3)	intron (NM_001144972, intron 1 of 3)	1852	NM_182854	124460		NM_153337	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
125305	chr2	10658201	10658400	+	0	NA	intron (NM_024894, intron 10 of 20)	L2a|LINE|L2	31675	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
223675	chr8	144398921	144399530	+	0	NA	TTS (NR_031600)	TTS (NR_031600)	940	NR_031600	100302196		NR_031600	ENSG00000284139	MIR1234	MIRN1234|hsa-mir-1234	microRNA 1234	ncRNA
3717	chr1	16615301	16615750	+	0	NA	Intergenic	AluJb|SINE|Alu	-1961	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
196304	chr6	43052151	43052450	+	0	NA	exon (NM_014780, exon 2 of 26)	exon (NM_014780, exon 2 of 26)	1551	NM_001374872	9820		NM_014780	ENSG00000044090	CUL7	3M1|CUL-7|KIAA0076|dJ20C7.5	cullin 7	protein-coding
55027	chr12	96384351	96384850	+	0	NA	intron (NM_002595, intron 1 of 16)	L1PA16|LINE|L1	15839	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
33296	chr10	114769951	114770450	+	0	NA	intron (NR_120628, intron 1 of 2)	intron (NR_120628, intron 1 of 2)	-1896	NM_001322886	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
194970	chr6	35327101	35328080	+	0	NA	Intergenic	Intergenic	-14968	NM_001171818	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
162572	chr3	48663601	48664880	+	0	NA	intron (NR_111921, intron 1 of 2)	intron (NR_111921, intron 1 of 2)	472	NR_111921	102724368		NR_111921	ENSG00000228350	LINC02585	CELSR3-AS1	long intergenic non-protein coding RNA 2585	ncRNA
56753	chr12	120148251	120148750	+	0	NA	intron (NM_006836, intron 36 of 57)	intron (NM_006836, intron 36 of 57)	6999	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
226785	chr9	76654951	76655980	+	0	NA	exon (NM_001330680, exon 2 of 11)	exon (NM_001330680, exon 2 of 11)	36950	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
127920	chr2	46353271	46353630	+	0	NA	intron (NM_001430, intron 2 of 15)	MER45R|DNA|hAT-Tip100	40717	NR_146999	105374582		NR_146999	ENSG00000228100	LINC01820	-	long intergenic non-protein coding RNA 1820	ncRNA
183932	chr5	87405501	87406180	+	0	NA	intron (NM_001239, intron 4 of 8)	L2b|LINE|L2	7064	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
179507	chr4	184731701	184732130	+	0	NA	intron (NM_024629, intron 1 of 12)	L1MC4|LINE|L1	2181	NM_024629	79682		NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
5915	chr1	26837871	26838100	+	0	NA	intron (NM_032283, intron 2 of 7)	AluSp|SINE|Alu	11297	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
145249	chr20	38961051	38961150	+	0	NA	Intergenic	MIRb|SINE|MIR	-1244	NM_001190809	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
16316	chr1	154194121	154194580	+	0	NA	promoter-TSS (NR_030600)	promoter-TSS (NR_030600)	-607	NR_030600	100126346		NR_030600	ENSG00000215938	MIR190B	MIRN190B|mir-190b	microRNA 190b	ncRNA
164338	chr3	58005071	58005230	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-3272	NM_001164317	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
172368	chr4	1748301	1749030	+	0	NA	Intergenic	Intergenic	27144	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
65218	chr14	49781051	49781550	+	0	NA	TTS (NM_004713)	TTS (NM_004713)	13147	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
89836	chr16	89584271	89584780	+	0	NA	intron (NM_153636, intron 4 of 14)	CpG	8767	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
84127	chr16	29680651	29680750	+	0	NA	intron (NM_001318249, intron 1 of 2)	AluSz|SINE|Alu	1520	NR_134536	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
156629	chr22	41603671	41604700	+	0	NA	intron (NM_015704, intron 3 of 5)	intron (NM_015704, intron 3 of 5)	-14345	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
70844	chr14	103698751	103699050	+	0	NA	exon (NM_005432, exon 10 of 10)	exon (NM_005432, exon 10 of 10)	16551	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
116936	chr19	18842071	18842530	+	0	NA	intron (NM_001297549, intron 1 of 23)	intron (NM_001297549, intron 1 of 23)	10341	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
63956	chr14	22113301	22113850	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	319178	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
21453	chr1	205488021	205488950	+	0	NA	Intergenic	Intergenic	-16184	NM_002596	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
72751	chr15	39623071	39624180	+	0	NA	intron (NM_001324338, intron 10 of 11)	MLT1M|LTR|ERVL-MaLR	42546	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
46715	chr11	128861101	128861700	+	0	NA	intron (NM_153766, intron 1 of 2)	intron (NM_153766, intron 1 of 2)	5896	NM_153765	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
233818	chrX	1475821	1476280	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-22288	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
204576	chr7	5281271	5282080	+	0	NA	Intergenic	Intergenic	-1268	NM_001040661	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
23391	chr1	228207771	228208330	+	0	NA	promoter-TSS (NM_001098623)	promoter-TSS (NM_001098623)	6	NM_052843	84033		NM_052843	ENSG00000154358	OBSCN	ARHGEF30|RHABDO1|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding
53532	chr12	67193771	67193930	+	0	NA	Intergenic	Intergenic	-75508	NM_001329674	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
106878	chr18	24394801	24395630	+	0	NA	intron (NM_080597, intron 1 of 27)	intron (NM_080597, intron 1 of 27)	2609	NM_080597	114876		NM_018030	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein like 1A	protein-coding
46674	chr11	128728721	128729750	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-33212	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
8133	chr1	39268121	39268930	+	0	NA	intron (NM_012090, intron 5 of 92)	intron (NM_012090, intron 5 of 92)	-140548	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
10697	chr1	74745051	74745500	+	0	NA	intron (NM_138467, intron 3 of 5)	LTR12|LTR|ERV1	-11867	NM_001130042	1429		NM_001889	ENSG00000116791	CRYZ	-	crystallin zeta	protein-coding
140165	chr2	231618371	231618530	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	25586	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
213644	chr7	139725001	139725400	+	0	NA	intron (NM_022740, intron 1 of 14)	L2c|LINE|L2	52798	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
187011	chr5	139755021	139756680	+	0	NA	Intergenic	MER96B|DNA|hAT-Tip100	-9627	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
1972	chr1	6595571	6596050	+	0	NA	intron (NM_014851, intron 2 of 3)	intron (NM_014851, intron 2 of 3)	7059	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
48762	chr12	11486251	11486950	+	0	NA	promoter-TSS (NR_148969)	promoter-TSS (NR_148969)	78	NR_148969	440084		NR_148969		LOC440084	-	uncharacterized LOC440084	ncRNA
41825	chr11	67054971	67055580	+	0	NA	Intergenic	Intergenic	-1572	NM_001300886	29984		NM_014578	ENSG00000173156	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
64331	chr14	23929801	23930080	+	0	NA	Intergenic	Intergenic	-23830	NM_001282987	10901		NM_021004	ENSG00000157326	DHRS4	CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2	dehydrogenase/reductase 4	protein-coding
16123	chr1	153647921	153648500	+	0	NA	Intergenic	Intergenic	-10444	NR_052020	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
115493	chr19	15378801	15380560	+	0	NA	TTS (NM_001291478)	TTS (NM_001291478)	107	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
152884	chr22	22654001	22654400	+	0	NA	Intergenic	Intergenic	7888	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
25434	chr10	6581301	6582300	+	0	NA	intron (NR_036503, intron 1 of 1)	intron (NR_036503, intron 1 of 1)	-1154	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
38337	chr11	44556601	44557600	+	0	NA	Intergenic	MIRc|SINE|MIR	-8563	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
155413	chr22	38397051	38397700	+	0	NA	intron (NR_002821, intron 1 of 4)	CpG	1540	NM_001289912	102800317		NM_001289912	ENSG00000283900	TPTEP2-CSNK1E	LOC400927-CSNK1E	TPTEP2-CSNK1E readthrough	protein-coding
158955	chr3	10196371	10197050	+	0	NA	intron (NM_001570, intron 2 of 12)	(CCTG)n|Simple_repeat|Simple_repeat	31791	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
154015	chr22	30433121	30433730	+	0	NA	intron (NR_148046, intron 1 of 3)	MIRb|SINE|MIR	739	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
114095	chr19	11117571	11118350	+	0	NA	intron (NM_001195800, intron 10 of 15)	AluSp|SINE|Alu	4486	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
223941	chr9	880771	881000	+	0	NA	intron (NM_001363767, intron 2 of 4)	Charlie1a|DNA|hAT-Charlie	37596	NM_001363767	1761		NM_021951	ENSG00000137090	DMRT1	CT154|DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
9800	chr1	53681871	53682530	+	0	NA	intron (NM_001367484, intron 2 of 10)	intron (NM_001367484, intron 2 of 10)	52004	NM_147193	148979		NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
124224	chr19	57282851	57282950	+	0	NA	intron (NM_006635, intron 1 of 2)	AluJb|SINE|Alu	2415	NM_006635	10794		NM_006635	ENSG00000197714	ZNF460	HZF8|ZNF272	zinc finger protein 460	protein-coding
25252	chr10	6059351	6059830	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	2777	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
159394	chr3	13428201	13429000	+	0	NA	Intergenic	AluSx3|SINE|Alu	-8278	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
119314	chr19	39881401	39882200	+	0	NA	intron (NM_003890, intron 19 of 28)	LTR41C|LTR|ERVL	-35421	NM_001436	2091		NM_001436	ENSG00000105202	FBL	FIB|FLRN|Nop1|RNU3IP1	fibrillarin	protein-coding
188163	chr5	150445551	150446050	+	0	NA	intron (NM_005617, intron 3 of 4)	MER58C|DNA|hAT-Charlie	3939	NM_005617	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
151408	chr21	46031571	46031730	+	0	NA	Intergenic	L1MB7|LINE|L1	49880	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
88794	chr16	87378721	87379350	+	0	NA	intron (NM_001282683, intron 2 of 9)	intron (NM_001282683, intron 2 of 9)	4741	NM_024735	79791		NM_024735	ENSG00000103264	FBXO31	FBX14|FBXO14|Fbx31|MRT45|pp2386	F-box protein 31	protein-coding
235280	chrX	41917521	41917980	+	0	NA	intron (NM_001126055, intron 1 of 24)	MamRTE1|LINE|RTE-BovB	5284	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
158605	chr3	4833451	4834930	+	0	NA	intron (NM_002222, intron 56 of 57)	AluJr|SINE|Alu	72311	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
162776	chr3	49086221	49086600	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluY|SINE|Alu	7222	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
109165	chr19	291541	292330	+	0	NA	promoter-TSS (NM_177543)	promoter-TSS (NM_177543)	-532	NM_003712	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
224027	chr9	3441201	3441630	+	0	NA	intron (NM_001282116, intron 1 of 16)	L1MC3|LINE|L1	48019	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
66933	chr14	65469951	65470250	+	0	NA	intron (NM_004480, intron 2 of 9)	MER52D|LTR|ERV1	-1002	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
158861	chr3	9842021	9842280	+	0	NA	intron (NM_001142547, intron 2 of 7)	intron (NM_001142547, intron 2 of 7)	1858	NM_001351736	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
93918	chr17	21289921	21290600	+	0	NA	intron (NM_002756, intron 1 of 11)	intron (NM_002756, intron 1 of 11)	2224	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
69059	chr14	91889501	91889900	+	0	NA	intron (NM_001384161, intron 7 of 12)	intron (NM_001384161, intron 7 of 12)	-22164	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
71858	chr15	22259871	22260830	+	0	NA	intron (NR_033735, intron 1 of 2)	intron (NR_033735, intron 1 of 2)	1736	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
111920	chr19	4721601	4721800	+	0	NA	intron (NM_001384635, intron 1 of 9)	AluSx|SINE|Alu	1073	NM_001384628	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
123191	chr19	52537451	52537730	+	0	NA	intron (NM_001039886, intron 2 of 4)	AluJo|SINE|Alu	9881	NM_001321424	388558		NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
145138	chr20	38823321	38823930	+	0	NA	intron (NM_001172735, intron 1 of 9)	AluSz|SINE|Alu	17928	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
125960	chr2	25227501	25227900	+	0	NA	TTS (NM_022552)	TTS (NM_022552)	23387	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
213743	chr7	140406101	140407000	+	0	NA	intron (NM_001008749, intron 1 of 3)	AluSz|SINE|Alu	2492	NM_001008749	401409		NM_001008749	ENSG00000146955	RAB19	RAB19B	RAB19, member RAS oncogene family	protein-coding
28625	chr10	58384881	58386100	+	0	NA	promoter-TSS (NM_003201)	promoter-TSS (NM_003201)	80	NM_003201	7019		NM_003201	ENSG00000108064	TFAM	MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	transcription factor A, mitochondrial	protein-coding
197274	chr6	70684871	70685680	+	0	NA	intron (NM_001281440, intron 1 of 10)	intron (NM_001281440, intron 1 of 10)	16745	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
57534	chr12	122146971	122147130	+	0	NA	3' UTR (NM_014938, exon 17 of 17)	3' UTR (NM_014938, exon 17 of 17)	-20669	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
53736	chr12	68635151	68635800	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluSx1|SINE|Alu	-8100	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
235001	chrX	39820971	39821750	+	0	NA	Intergenic	CpG	-16201	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
95256	chr17	35450771	35451130	+	0	NA	Intergenic	L1MEc|LINE|L1	-2184	NM_144682	146857		NM_144682	ENSG00000154760	SLFN13	SLFN10|hSLFN13	schlafen family member 13	protein-coding
7637	chr1	35570171	35570330	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-3064	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
12813	chr1	109912271	109912880	+	0	NA	intron (NM_172210, intron 1 of 8)	intron (NM_172210, intron 1 of 8)	1726	NM_172210	1435		NM_000757	ENSG00000184371	CSF1	CSF-1|MCSF|PG-M-CSF	colony stimulating factor 1	protein-coding
204772	chr7	5607401	5607930	+	0	NA	Intergenic	CpG	14849	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
16788	chr1	155538051	155538350	+	0	NA	intron (NM_018489, intron 1 of 27)	AluSz|SINE|Alu	-23842	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
134568	chr2	144214871	144215380	+	0	NA	intron (NM_001164629, intron 2 of 11)	AluJr4|SINE|Alu	22214	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
148860	chr21	8424911	8425350	+	0	NA	Intergenic	Intergenic	-7400	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
167988	chr3	136735621	136735880	+	0	NA	intron (NM_005862, intron 1 of 33)	AluSz6|SINE|Alu	16628	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
71151	chr14	105013221	105013630	+	0	NA	intron (NM_017955, intron 1 of 1)	intron (NM_017955, intron 1 of 1)	7658	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
75159	chr15	64633051	64633450	+	0	NA	intron (NM_015042, intron 3 of 9)	AluJb|SINE|Alu	70031	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
33761	chr10	122515601	122516600	+	0	NA	Intergenic	Intergenic	-44654	NM_001320644	1755		NM_004406	ENSG00000187908	DMBT1	GP340|SAG|SALSA|muclin	deleted in malignant brain tumors 1	protein-coding
191245	chr6	5869051	5870050	+	0	NA	Intergenic	Intergenic	134494	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
235334	chrX	43882301	43882550	+	0	NA	promoter-TSS (NM_000898)	promoter-TSS (NM_000898)	25	NM_000898	4129		NM_000898	ENSG00000069535	MAOB	-	monoamine oxidase B	protein-coding
236866	chrX	80405671	80405830	+	0	NA	intron (NM_001170574, intron 3 of 4)	L1PA3|LINE|L1	-14697	NM_152630	169966		NM_152630	ENSG00000174016	TENT5D	CT1.26|CT112|FAM46D	terminal nucleotidyltransferase 5D	protein-coding
224249	chr9	5886101	5886700	+	0	NA	Intergenic	Intergenic	-4489	NM_005511	2315		NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
81478	chr16	8931901	8932180	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	4599	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
122456	chr19	49505651	49505980	+	0	NA	Intergenic	AluY|SINE|Alu	-4947	NR_029703	406942		NR_029703	ENSG00000207782	MIR150	MIRN150|miRNA150|mir-150	microRNA 150	ncRNA
133058	chr2	112259301	112260380	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-4798	NM_032494	84524		NM_032494	ENSG00000144161	ZC3H8	Fliz1|ZC3HDC8	zinc finger CCCH-type containing 8	protein-coding
106950	chr18	31042471	31042830	+	0	NA	promoter-TSS (NM_001941)	promoter-TSS (NM_001941)	92	NM_001941	1825		NM_001941	ENSG00000134762	DSC3	CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP	desmocollin 3	protein-coding
98276	chr17	46205721	46206400	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluJo|SINE|Alu	12487	NR_034172	644246		NR_034172	ENSG00000214401	KANSL1-AS1	-	KANSL1 antisense RNA 1	ncRNA
147067	chr20	53736871	53737450	+	0	NA	Intergenic	Intergenic	128806	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
6509	chr1	28516021	28516400	+	0	NA	intron (NM_001048199, intron 3 of 11)	AluSx|SINE|Alu	-2016	NM_001048195	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
35892	chr11	2404801	2405000	+	0	NA	3' UTR (NM_014555, exon 24 of 24)	3' UTR (NM_014555, exon 24 of 24)	4150	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
118538	chr19	36093221	36093680	+	0	NA	intron (NM_173636, intron 19 of 31)	intron (NM_173636, intron 19 of 31)	-17753	NM_001302757	728361		NM_001270948	ENSG00000105261	OVOL3	HOVO3	ovo like zinc finger 3	protein-coding
78179	chr15	90540871	90541380	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	11202	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
199154	chr6	111731701	111732600	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	26981	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
38906	chr11	47417271	47417430	+	0	NA	TTS (NM_001128225)	TTS (NM_001128225)	8760	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
35923	chr11	2440501	2441080	+	0	NA	Intergenic	Intergenic	-4218	NM_000218	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
139805	chr2	230326551	230328030	+	0	NA	promoter-TSS (NM_138402)	promoter-TSS (NM_138402)	97	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
52791	chr12	56716171	56717000	+	0	NA	exon (NM_001365896, exon 3 of 9)	exon (NM_001365896, exon 3 of 9)	8714	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
74518	chr15	60395601	60396100	+	0	NA	intron (NM_001136015, intron 1 of 13)	intron (NM_001136015, intron 1 of 13)	2136	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
206106	chr7	27210071	27211200	+	0	NA	Intergenic	Intergenic	10214	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
153936	chr22	30336251	30336350	+	0	NA	intron (NM_005877, intron 13 of 15)	AluSz6|SINE|Alu	-9359	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
135310	chr2	160324251	160324730	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	-52595	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
113629	chr19	10326471	10326830	+	0	NA	intron (NM_133452, intron 3 of 12)	AluSx|SINE|Alu	6879	NM_133452	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
220823	chr8	102822751	102823930	+	0	NA	Intergenic	AluSx|SINE|Alu	16518	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
7919	chr1	37486601	37486800	+	0	NA	Intergenic	Intergenic	6470	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
98083	chr17	45581201	45581600	+	0	NA	Intergenic	Intergenic	20462	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
74382	chr15	58878251	58878650	+	0	NA	TTS (NM_024755)	TTS (NM_024755)	55229	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
26833	chr10	24645601	24646050	+	0	NA	intron (NR_160021, intron 4 of 26)	L2a|LINE|L2	-22982	NR_160024	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
106600	chr18	22238051	22238750	+	0	NA	Intergenic	MIRb|SINE|MIR	68811	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
219284	chr8	67678601	67678900	+	0	NA	intron (NM_020361, intron 1 of 10)	L1ME3A|LINE|L1	67610	NM_020361	57094		NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
23699	chr1	231611321	231611580	+	0	NA	intron (NR_034037, intron 1 of 1)	intron (NR_034037, intron 1 of 1)	640	NR_034037	100287814		NR_034037	ENSG00000229228	LINC00582	SMILO	long intergenic non-protein coding RNA 582	ncRNA
76793	chr15	77023471	77023630	+	0	NA	intron (NR_135552, intron 3 of 11)	L2b|LINE|L2	28424	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
236898	chrX	85244751	85245250	+	0	NA	intron (NM_001375431, intron 1 of 8)	intron (NM_001375431, intron 1 of 8)	1009	NM_001375433	7552		NM_021998	ENSG00000147180	ZNF711	CMPX1|MRX65|MRX97|XLID97|ZNF4|ZNF5|ZNF6|Zfp711|dJ75N13.1	zinc finger protein 711	protein-coding
140504	chr2	233203921	233204180	+	0	NA	intron (NM_001017915, intron 25 of 26).2	L1MB5|LINE|L1	-47521	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
8563	chr1	41357451	41358200	+	0	NA	Intergenic	Intergenic	-3609	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
70130	chr14	100261571	100262180	+	0	NA	intron (NM_003403, intron 1 of 4)	AluJr|SINE|Alu	-15482	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
134596	chr2	144321801	144322080	+	0	NA	intron (NM_001376310, intron 1 of 13)	intron (NM_001376310, intron 1 of 13)	10294	NM_001376318	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
28272	chr10	45973751	45974280	+	0	NA	intron (NR_073030, intron 1 of 5)	intron (NR_073030, intron 1 of 5)	1526	NM_006327	100287932		NM_006327	ENSG00000265354	TIMM23	TIM23	translocase of inner mitochondrial membrane 23	protein-coding
205233	chr7	7996551	7996930	+	0	NA	intron (NM_138426, intron 1 of 7)	intron (NM_138426, intron 1 of 7)	27944	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
14864	chr1	146406471	146406830	+	0	NA	Intergenic	LTR23-int|LTR|ERV1	29843	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
13614	chr1	116401801	116402000	+	0	NA	intron (NM_000701, intron 21 of 22)	intron (NM_000701, intron 21 of 22)	16659	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
142169	chr20	2845401	2845800	+	0	NA	intron (NM_022575, intron 1 of 23)	intron (NM_022575, intron 1 of 23)	-4449	NM_001271168	64773		NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
19801	chr1	182600871	182602150	+	0	NA	intron (NM_002928, intron 4 of 4)	intron (NM_002928, intron 4 of 4)	2879	NM_002928	6004		NM_002928	ENSG00000143333	RGS16	A28-RGS14|A28-RGS14P|RGS-R	regulator of G protein signaling 16	protein-coding
19495	chr1	175150601	175150800	+	0	NA	Intergenic	Intergenic	42076	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
119087	chr19	39247771	39248080	+	0	NA	exon (NM_001276254, exon 3 of 6)	exon (NM_001276254, exon 3 of 6)	931	NR_074079	101180976		NM_001276254	ENSG00000272395	IFNL4	IFNAN	interferon lambda 4 (gene/pseudogene)	protein-coding
194858	chr6	34525121	34525730	+	0	NA	intron (NM_001199583, intron 1 of 9)	intron (NM_001199583, intron 1 of 9)	10553	NM_001199583	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
52982	chr12	57489471	57489630	+	0	NA	promoter-TSS (NM_001319850)	promoter-TSS (NM_001319850)	-726	NM_001319850	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
210481	chr7	100160151	100160250	+	0	NA	exon (NM_024637, exon 4 of 4)	exon (NM_024637, exon 4 of 4)	-1477	NM_018275	55262		NM_018275	ENSG00000146826	TRAPPC14	C7orf43|MAP11|MCPH25	trafficking protein particle complex subunit 14	protein-coding
207461	chr7	44609071	44609680	+	0	NA	intron (NM_001363523, intron 1 of 23)	AluJb|SINE|Alu	2748	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
13775	chr1	117119771	117119930	+	0	NA	intron (NM_025188, intron 1 of 5)	intron (NM_025188, intron 1 of 5)	1899	NM_001145635	80263		NM_025188	ENSG00000134253	TRIM45	RNF99	tripartite motif containing 45	protein-coding
216269	chr8	12466271	12466650	+	0	NA	intron (NR_040092, intron 4 of 5)	HERVK-int|LTR|ERVK	29447	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
97854	chr17	44983771	44983930	+	0	NA	Intergenic	Intergenic	-15547	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
167549	chr3	129341201	129341430	+	0	NA	Intergenic	Intergenic	-25029	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
27163	chr10	28502051	28502580	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-6502	NR_134496	105376468		NR_134496	ENSG00000237128	LINC02652	-	long intergenic non-protein coding RNA 2652	ncRNA
19108	chr1	171493451	171494000	+	0	NA	intron (NM_015172, intron 1 of 33)	AluSx1|SINE|Alu	8195	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
125648	chr2	19899621	19900920	+	0	NA	intron (NM_001008237, intron 1 of 2)	intron (NM_001008237, intron 1 of 2)	1713	NM_001008237	130502		NM_001008237	ENSG00000183891	TTC32	-	tetratricopeptide repeat domain 32	protein-coding
43376	chr11	77038871	77039030	+	0	NA	intron (NM_138706, intron 1 of 1)	MIRb|SINE|MIR	4552	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
19460	chr1	174916721	174916980	+	0	NA	intron (NM_001366454, intron 3 of 8)	MLT1J|LTR|ERVL-MaLR	37411	NR_121196	101928696		NR_121196	ENSG00000229531	RABGAP1L-AS1	-	RABGAP1L antisense RNA 1	ncRNA
219330	chr8	70214451	70214780	+	0	NA	intron (NM_001321713, intron 3 of 21)	intron (NM_001321713, intron 3 of 21)	-143363	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
139661	chr2	226838021	226838750	+	0	NA	intron (NM_001349072, intron 2 of 7)	intron (NM_001349072, intron 2 of 7)	2331	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
207790	chr7	50240801	50241150	+	0	NA	Intergenic	L1PB2|LINE|L1	-63089	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
109504	chr19	830851	831150	+	0	NA	intron (NM_001700, intron 4 of 4)	intron (NM_001700, intron 4 of 4)	3163	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
54523	chr12	92118921	92119850	+	0	NA	intron (NR_132341, intron 1 of 4)	HSMAR2|DNA|TcMar-Mariner	22328	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
141706	chr2	241842171	241842330	+	0	NA	Intergenic	MLT2D|LTR|ERVL	16644	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
229050	chr9	114337021	114337480	+	0	NA	exon (NM_001317950, exon 22 of 22)	exon (NM_001317950, exon 22 of 22)	7381	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
172841	chr4	3220801	3221200	+	0	NA	intron (NM_002111, intron 53 of 66)	intron (NM_002111, intron 53 of 66)	-23369	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
24287	chr1	236524401	236525150	+	0	NA	promoter-TSS (NR_034040)	promoter-TSS (NR_034040)	-267	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
192640	chr6	26157021	26158500	+	0	NA	promoter-TSS (NM_138720)	promoter-TSS (NM_138720)	-361	NM_138720	3017		NM_021063	ENSG00000158373	H2BC5	H2B.1B|H2B/a|H2B/b|H2B/g|H2B/h|H2B/k|H2B/l|H2BFA|H2BFB|H2BFG|H2BFH|H2BFK|H2BFL|HIRIP2|HIST1H2BC|HIST1H2BD|HIST1H2BE|HIST1H2BF|HIST1H2BG|HIST1H2BI|dJ221C16.6	H2B clustered histone 5	protein-coding
181380	chr5	40654951	40655950	+	0	NA	Intergenic	L1M2|LINE|L1	-24465	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
85294	chr16	48629101	48629250	+	0	NA	Intergenic	MIR|SINE|MIR	-18995	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
142010	chr20	1622471	1622930	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-2606	NM_001083910	10326		NM_006065	ENSG00000101307	SIRPB1	CD172b|SIRP-BETA-1	signal regulatory protein beta 1	protein-coding
13255	chr1	112711851	112711950	+	0	NA	intron (NM_005167, intron 5 of 9)	intron (NM_005167, intron 5 of 9)	3428	NM_005167	333926		NM_005167	ENSG00000155367	PPM1J	PP2C-zeta|PP2CZ|PP2Czeta|PPP2CZ	protein phosphatase, Mg2+/Mn2+ dependent 1J	protein-coding
229444	chr9	121455901	121456230	+	0	NA	intron (NM_001382586, intron 7 of 7)	intron (NM_001382586, intron 7 of 7)	42645	NM_001382587	2681		NM_001382584	ENSG00000204136	GGTA1	GGTA|GGTA1P|GLYT2|a1/3GTP	glycoprotein alpha-galactosyltransferase 1 (inactive)	protein-coding
174527	chr4	40152451	40152880	+	0	NA	intron (NM_001318359, intron 17 of 18)	intron (NM_001318359, intron 17 of 18)	-38415	NM_001278368	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
3633	chr1	16382651	16382750	+	0	NA	intron (NR_073500, intron 1 of 1)	AluSx|SINE|Alu	15458	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
78668	chr15	94607451	94607550	+	0	NA	Intergenic	Intergenic	-247863	NR_077061	440311		NR_077061	ENSG00000277654	LOC440311	-	NOP53 ribosome biogenesis factor pseudogene	pseudo
28752	chr10	62001921	62002180	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-47307	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
165312	chr3	87260121	87260400	+	0	NA	intron (NM_001122757, intron 5 of 5)	intron (NM_001122757, intron 5 of 5)	16324	NM_001122757	5449		NM_000306	ENSG00000064835	POU1F1	CPHD1|GHF-1|PIT1|POU1F1a|Pit-1	POU class 1 homeobox 1	protein-coding
29700	chr10	72062551	72063250	+	0	NA	exon (NM_001244950, exon 11 of 11)	exon (NM_001244950, exon 11 of 11)	25651	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
7080	chr1	32027351	32027450	+	0	NA	intron (NR_073498, intron 1 of 8)	intron (NR_073498, intron 1 of 8)	13532	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
172347	chr4	1714351	1715050	+	0	NA	Intergenic	MER49|LTR|ERV1	-2381	NM_001306074	7884		NM_006527	ENSG00000163950	SLBP	HBP	stem-loop histone mRNA binding protein	protein-coding
45262	chr11	118000571	118001050	+	0	NA	non-coding (NR_026691, exon 8 of 8)	non-coding (NR_026691, exon 8 of 8)	14416	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
195939	chr6	41924621	41925380	+	0	NA	intron (NM_004053, intron 1 of 6)	L2b|LINE|L2	3501	NM_004053	705		NM_004053	ENSG00000112578	BYSL	BYSTIN|Enp1	bystin like	protein-coding
180098	chr5	1155571	1156500	+	0	NA	Intergenic	CpG	22570	NR_109911	101928857		NR_109911	ENSG00000249201	TERLR1	CTD-3080P12.3	TERT regulating lncRNA 1	ncRNA
188310	chr5	151196621	151197180	+	0	NA	intron (NM_015621, intron 4 of 8)	L1MB5|LINE|L1	-15234	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
96007	chr17	39221571	39221930	+	0	NA	intron (NM_001351360, intron 1 of 10)	intron (NM_001351360, intron 1 of 10)	4195	NM_198993	342667		NM_198993	ENSG00000141750	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
187884	chr5	148806671	148806830	+	0	NA	Intergenic	L2c|LINE|L2	-19861	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
152011	chr22	19419251	19420400	+	0	NA	intron (NM_003325, intron 1 of 24)	intron (NM_003325, intron 1 of 24)	11908	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
239235	chrY	12950671	12951130	+	0	NA	Intergenic	Intergenic	45195	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
112091	chr19	5560971	5561700	+	0	NA	non-coding (NR_027064, exon 3 of 3)	non-coding (NR_027064, exon 3 of 3)	6699	NR_027064								
200416	chr6	134822801	134823200	+	0	NA	Intergenic	MIR3|SINE|MIR	127101	NM_170771	64577		NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding
202590	chr6	158702451	158702630	+	0	NA	intron (NM_001318745, intron 3 of 14)	FRAM|SINE|Alu	39137	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
162749	chr3	49053951	49054450	+	0	NA	intron (NM_001320580, intron 4 of 10)	intron (NM_001320580, intron 4 of 10)	-24802	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
12449	chr1	107787421	107787680	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-99051	NM_001079874	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
214489	chr7	150409651	150410180	+	0	NA	intron (NR_027237, intron 2 of 2)	intron (NR_027237, intron 2 of 2)	4163	NR_027237	728743		NM_001080852	ENSG00000284691	LOC728743	-	zinc finger domain-containing protein LOC728743	protein-coding
172223	chr4	1321801	1322200	+	0	NA	intron (NR_123716, intron 3 of 6)	intron (NR_123716, intron 3 of 6)	12209	NM_001297433	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
238925	chrX	154737801	154738550	+	0	NA	intron (NR_104114, intron 1 of 8)	L3|LINE|CR1	12902	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
111452	chr19	3828271	3828830	+	0	NA	intron (NM_015174, intron 5 of 18)	intron (NM_015174, intron 5 of 18)	-26751	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
181234	chr5	39192151	39192250	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	27363	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
87351	chr16	70352201	70352600	+	0	NA	intron (NM_018332, intron 2 of 11)	AluSx1|SINE|Alu	5497	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
68386	chr14	80491271	80491430	+	0	NA	Intergenic	Intergenic	-260293	NM_000793	1734		NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SELENOY|SelY|TXDI2	iodothyronine deiodinase 2	protein-coding
151064	chr21	44761371	44761880	+	0	NA	Intergenic	L1MEf|LINE|L1	40195	NM_182688	7327		NM_003343	ENSG00000184787	UBE2G2	UBC7	ubiquitin conjugating enzyme E2 G2	protein-coding
177392	chr4	112223701	112224180	+	0	NA	Intergenic	AluY|SINE|Alu	-7847	NM_018569	55435		NM_018569	ENSG00000138660	AP1AR	2C18|C4orf16|GBAR|PRO0971|gamma-BAR	adaptor related protein complex 1 associated regulatory protein	protein-coding
101818	chr17	73567171	73567680	+	0	NA	intron (NM_001144952, intron 1 of 44)	MSTB-int|LTR|ERVL-MaLR	53742	NR_135635	101928251		NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA
232403	chr9	136020301	136020500	+	0	NA	intron (NM_144653, intron 2 of 5)	intron (NM_144653, intron 2 of 5)	-59027	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
10191	chr1	61744271	61745100	+	0	NA	intron (NM_176877, intron 1 of 42)	MER21A|LTR|ERVL	2205	NM_176877	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
98756	chr17	48100801	48101980	+	0	NA	promoter-TSS (NM_001127228)	promoter-TSS (NM_001127228)	88	NM_001127228	10951		NM_006807	ENSG00000108468	CBX1	CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|Hp1beta|M31|MOD1|p25beta	chromobox 1	protein-coding
79042	chr16	77451	78980	+	0	NA	promoter-TSS (NM_001015052)	promoter-TSS (NM_001015052)	-10	NM_002434	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
228775	chr9	111334501	111334730	+	0	NA	Intergenic	L1P3|LINE|L1	-4391	NM_205859	26248		NM_205859	ENSG00000171133	OR2K2	HSHTPCRH06|HTPCRH06|OR2AN1P|OR2AR1P	olfactory receptor family 2 subfamily K member 2	protein-coding
78377	chr15	91655621	91656150	+	0	NA	Intergenic	LTR12|LTR|ERV1	192546	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
166057	chr3	108823571	108824780	+	0	NA	intron (NM_001317747, intron 1 of 4)	L1ME4c|LINE|L1	1389	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
10898	chr1	82819401	82819600	+	0	NA	Intergenic	Intergenic	-83683	NR_147074	103283057		NR_147074	ENSG00000230817	LINC01362	-	long intergenic non-protein coding RNA 1362	ncRNA
108888	chr18	79407771	79408530	+	0	NA	intron (NM_001278673, intron 1 of 8)	intron (NM_001278673, intron 1 of 8)	7851	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
105803	chr18	2932301	2933080	+	0	NA	intron (NM_001375809, intron 8 of 19)	MLT1J2|LTR|ERVL-MaLR	13933	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
171258	chr3	195859001	195859950	+	0	NA	intron (NR_134939, intron 1 of 1)	intron (NR_134939, intron 1 of 1)	929	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
84621	chr16	30703221	30703480	+	0	NA	intron (NM_006662, intron 3 of 33)	AluSx1|SINE|Alu	4179	NM_006662	10847		NM_006662	ENSG00000080603	SRCAP	DEHMBA|DOMO1|EAF1|FLHS|SWR1	Snf2 related CREBBP activator protein	protein-coding
220241	chr8	97170671	97170850	+	0	NA	intron (NR_125390, intron 2 of 2)	MER77|LTR|ERVL	107168	NM_033512	85453		NM_033512	ENSG00000180543	TSPYL5	-	TSPY like 5	protein-coding
45591	chr11	118890621	118890880	+	0	NA	intron (NM_001716, intron 1 of 1)	intron (NM_001716, intron 1 of 1)	-2642	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
41599	chr11	66369921	66370180	+	0	NA	intron (NR_125343, intron 2 of 11)	L2c|LINE|L2	1710	NM_001532	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
219766	chr8	81098601	81099030	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	13253	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
192996	chr6	28136401	28138130	+	0	NA	promoter-TSS (NR_103455)	promoter-TSS (NR_103455)	51	NR_103456	100129195		NR_103455	ENSG00000269293	ZSCAN16-AS1	-	ZSCAN16 antisense RNA 1	ncRNA
175682	chr4	77021351	77021450	+	0	NA	intron (NM_018243, intron 7 of 9)	intron (NM_018243, intron 7 of 9)	53510	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
115215	chr19	14490571	14490800	+	0	NA	intron (NM_202470, intron 1 of 6)	AluSp|SINE|Alu	5442	NM_202470	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
155295	chr22	38136471	38137050	+	0	NA	intron (NM_001349868, intron 4 of 15)	intron (NM_001349868, intron 4 of 15)	-26076	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
65142	chr14	45087951	45088700	+	0	NA	intron (NM_017922, intron 1 of 13)	intron (NM_017922, intron 1 of 13)	4209	NM_017922	55015		NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
79554	chr16	967821	968680	+	0	NA	intron (NM_001352017, intron 1 of 11)	intron (NM_001352017, intron 1 of 11)	2734	NM_022773	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
31220	chr10	91632971	91633400	+	0	NA	promoter-TSS (NM_005398)	promoter-TSS (NM_005398)	-114	NM_005398	5507		NM_005398	ENSG00000119938	PPP1R3C	PPP1R5|PTG	protein phosphatase 1 regulatory subunit 3C	protein-coding
84570	chr16	30614421	30614680	+	0	NA	Intergenic	AluJr|SINE|Alu	-3775	NR_073481	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
75357	chr15	65532751	65533250	+	0	NA	intron (NM_016395, intron 1 of 10)	intron (NM_016395, intron 1 of 10)	2537	NM_016395	51495		NM_016395	ENSG00000074696	HACD3	B-IND1|BIND1|HSPC121|PTPLAD1	3-hydroxyacyl-CoA dehydratase 3	protein-coding
127627	chr2	43122021	43122280	+	0	NA	Intergenic	Intergenic	-19705	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
116705	chr19	18441301	18442730	+	0	NA	TTS (NM_006532)	TTS (NM_006532)	-3882	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
32557	chr10	103364651	103365080	+	0	NA	Intergenic	AluY|SINE|Alu	-3111	NM_139052	6877		NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
195751	chr6	39981171	39981330	+	0	NA	Intergenic	Intergenic	-46788	NM_001075098	4337		NM_005942	ENSG00000124615	MOCS1	MIG11|MOCOD|MOCS1A|MOCS1B	molybdenum cofactor synthesis 1	protein-coding
19073	chr1	170073101	170073300	+	0	NA	intron (NM_001204514, intron 1 of 20)	intron (NM_001204514, intron 1 of 20)	1495	NM_001375830	22920		NM_014970	ENSG00000075945	KIFAP3	FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1	kinesin associated protein 3	protein-coding
71410	chr14	105548621	105549030	+	0	NA	Intergenic	LTR12C|LTR|ERV1	16970	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
158367	chr22	50471921	50472180	+	0	NA	intron (NM_002972, intron 1 of 40)	intron (NM_002972, intron 1 of 40)	2985	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
144533	chr20	35713401	35714200	+	0	NA	intron (NM_184234, intron 11 of 16)	AluJb|SINE|Alu	14395	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
167576	chr3	129543851	129543950	+	0	NA	intron (NM_153833, intron 1 of 4)	L2c|LINE|L2	725	NM_153833	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
106422	chr18	13540671	13541430	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-70064	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
176753	chr4	101730371	101730780	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-60032	NM_001127507	55024		NM_017935	ENSG00000153064	BANK1	BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding
121171	chr19	46426401	46427050	+	0	NA	Intergenic	Intergenic	-13161	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
216137	chr8	11463901	11464400	+	0	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	2603	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
70883	chr14	103850551	103851180	+	0	NA	intron (NR_038436, intron 1 of 2)	(AAAT)n|Simple_repeat|Simple_repeat	3144	NR_038436	145216		NR_038436	ENSG00000258735	PPP1R13B-DT	HITT|LINC00637	PPP1R13B divergent transcript	ncRNA
179550	chr4	185128261	185129350	+	0	NA	Intergenic	CpG	-14461	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
177143	chr4	108121871	108122630	+	0	NA	intron (NM_016269, intron 3 of 11)	L1MEd|LINE|L1	44547	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
135163	chr2	157625251	157626180	+	0	NA	intron (NM_001111032, intron 1 of 7)	intron (NM_001111032, intron 1 of 7)	3149	NM_001111033	130399		NM_145259	ENSG00000123612	ACVR1C	ACVRLK7|ALK7	activin A receptor type 1C	protein-coding
192968	chr6	27871301	27872800	+	0	NA	exon (NM_003533, exon 1 of 1)	exon (NM_003533, exon 1 of 1)	296	NM_003533	8354		NM_003533	ENSG00000275379	H3C11	H3.f|H3/f|H3C1|H3C10|H3C12|H3C2|H3C3|H3C4|H3C6|H3C7|H3C8|H3FF|HIST1H3I	H3 clustered histone 11	protein-coding
129429	chr2	69436651	69438180	+	0	NA	promoter-TSS (NR_045632)	promoter-TSS (NR_045632)	20	NM_015700	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
142237	chr20	3103171	3103330	+	0	NA	Intergenic	Intergenic	-3661	NR_038395	100134015		NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
87896	chr16	78790521	78791180	+	0	NA	intron (NM_016373, intron 8 of 8)	AluJb|SINE|Alu	691196	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19286	chr1	172816801	172817200	+	0	NA	Intergenic	Intergenic	157897	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
26180	chr10	14533851	14534550	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	-1486	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
94749	chr17	30808671	30809900	+	0	NA	intron (NM_015986, intron 1 of 7)	intron (NM_015986, intron 1 of 7)	15407	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
207338	chr7	44063751	44064050	+	0	NA	3' UTR (NM_001284313, exon 11 of 11)	3' UTR (NM_001284313, exon 11 of 11)	1667	NM_000290	5224		NM_000290	ENSG00000164708	PGAM2	GSD10|PGAM-M|PGAMM	phosphoglycerate mutase 2	protein-coding
95776	chr17	38695871	38696230	+	0	NA	Intergenic	Intergenic	-5094	NR_158157	105371763		NR_158157		LOC105371763	-	uncharacterized LOC105371763	ncRNA
51697	chr12	53180001	53181650	+	0	NA	promoter-TSS (NM_015989)	promoter-TSS (NM_015989)	100	NM_001244705	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
219798	chr8	81250251	81250750	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-30036	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
6532	chr1	28575001	28575400	+	0	NA	intron (NM_017846, intron 8 of 8)	AluSc|SINE|Alu	3622	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	small nucleolar RNA, C/D box 99	snoRNA
30170	chr10	74194501	74194900	+	0	NA	intron (NM_001369124, intron 1 of 9)	intron (NM_001369124, intron 1 of 9)	17937	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
57115	chr12	121123771	121124330	+	0	NA	Intergenic	L2c|LINE|L2	-8826	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
225112	chr9	33456851	33457230	+	0	NA	Intergenic	Intergenic	-9447	NM_001318144	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
77785	chr15	86615521	86616230	+	0	NA	intron (NM_152336, intron 22 of 24)	intron (NM_152336, intron 22 of 24)	-298907	NR_046012	727915		NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
168271	chr3	141475221	141475630	+	0	NA	Intergenic	Intergenic	-11602	NM_001303246	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
186638	chr5	138555301	138555900	+	0	NA	3' UTR (NM_004134, exon 17 of 17)	3' UTR (NM_004134, exon 17 of 17)	3441	NR_145752	109617013		NR_145752	ENSG00000222937	SNORD63B	-	small nucleolar RNA, C/D box 63B	snoRNA
174370	chr4	38868471	38868630	+	0	NA	TTS (NR_030300)	TTS (NR_030300)	518	NR_030300	693159		NR_030300	ENSG00000207944	MIR574	MIR574-3p|MIRN574|hsa-mir-574|mir-574	microRNA 574	ncRNA
217695	chr8	30128171	30128330	+	0	NA	intron (NM_001128208, intron 3 of 3)	intron (NM_001128208, intron 3 of 3)	16415	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
176904	chr4	102801921	102802380	+	0	NA	intron (NM_003340, intron 5 of 7)	intron (NM_003340, intron 5 of 7)	23710	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
174845	chr4	48491201	48491780	+	0	NA	intron (NM_175619, intron 1 of 3)	CpG	1238	NM_175619	326340		NM_175619	ENSG00000182223	ZAR1	Z3CXXC6	zygote arrest 1	protein-coding
180066	chr5	1094351	1094980	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	17398	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
70721	chr14	103343371	103344580	+	0	NA	3' UTR (NM_183004, exon 11 of 11)	3' UTR (NM_183004, exon 11 of 11)	6126	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
215385	chr7	157462001	157462200	+	0	NA	Intergenic	Intergenic	-4131	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
150236	chr21	41361701	41363180	+	0	NA	intron (NM_002463, intron 1 of 13)	intron (NM_002463, intron 1 of 13)	413	NM_002463	4600		NM_002463	ENSG00000183486	MX2	MXB	MX dynamin like GTPase 2	protein-coding
47153	chr12	764421	765700	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSz6|SINE|Alu	12137	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
38139	chr11	35334321	35334980	+	0	NA	intron (NM_001195728, intron 1 of 11)	intron (NM_001195728, intron 1 of 11)	84908	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
194677	chr6	33672701	33673300	+	0	NA	intron (NM_002224, intron 22 of 57)	intron (NM_002224, intron 22 of 57)	-25128	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
25772	chr10	11146621	11147100	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-18021	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
62608	chr13	100514751	100515080	+	0	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	18887	NM_033110	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
224276	chr9	6305951	6306230	+	0	NA	Intergenic	Intergenic	-22285	NM_001001875	89882		NM_033516	ENSG00000170777	TPD52L3	D55|NYDSP25|TPD55|hD55	TPD52 like 3	protein-coding
176654	chr4	99948771	99949600	+	0	NA	intron (NM_002106, intron 3 of 4)	intron (NM_002106, intron 3 of 4)	1090	NM_002106	3015		NM_002106	ENSG00000164032	H2AZ1	H2A.Z-1|H2A.z|H2A/z|H2AFZ|H2AZ	H2A.Z variant histone 1	protein-coding
160745	chr3	32496701	32496900	+	0	NA	intron (NM_017801, intron 1 of 3)	intron (NM_017801, intron 1 of 3)	6052	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
34169	chr10	128087451	128088200	+	0	NA	Intergenic	L1M|LINE|L1	-25400	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
215516	chr7	158709571	158709950	+	0	NA	Intergenic	Intergenic	-4956	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
57614	chr12	122475471	122475830	+	0	NA	intron (NM_017612, intron 13 of 13)	intron (NM_017612, intron 13 of 13)	25282	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
160174	chr3	23402801	23403000	+	0	NA	intron (NM_001370225, intron 3 of 5)	intron (NM_001370225, intron 3 of 5)	199573	NM_001370228	7325		NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
117973	chr19	33371771	33372900	+	0	NA	Intergenic	AluSz|SINE|Alu	-1374	NM_001806	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
128129	chr2	48332621	48333280	+	0	NA	intron (NM_001375446, intron 3 of 7)	intron (NM_001375446, intron 3 of 7)	18268	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
194721	chr6	33787601	33790080	+	0	NA	exon (NM_181336, exon 1 of 9)	exon (NM_181336, exon 1 of 9)	290	NM_181336	221496		NM_181336	ENSG00000161904	LEMD2	CTRCT42|LEM2|MARUPS|NET25|dJ482C21.1	LEM domain nuclear envelope protein 2	protein-coding
215831	chr8	6707911	6709600	+	0	NA	promoter-TSS (NR_125386)	promoter-TSS (NR_125386)	113	NM_018361	55326		NM_018361	ENSG00000155189	AGPAT5	1AGPAT5|LPAATE|LPLAT5	1-acylglycerol-3-phosphate O-acyltransferase 5	protein-coding
137921	chr2	200965551	200966000	+	0	NA	Intergenic	AluJb|SINE|Alu	-2115	NM_006190	4999		NM_006190	ENSG00000115942	ORC2	ORC2L	origin recognition complex subunit 2	protein-coding
62494	chr13	99419821	99421180	+	0	NA	Intergenic	Intergenic	64369	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
44474	chr11	105033221	105033580	+	0	NA	intron (NM_033292, intron 2 of 9)	intron (NM_033292, intron 2 of 9)	1744	NM_001257119	834		NM_001223	ENSG00000137752	CASP1	ICE|IL1BC|P45	caspase 1	protein-coding
30710	chr10	80684201	80684490	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	34548	NR_155749	105378386		NR_155749	ENSG00000231082	LINC02655	-	long intergenic non-protein coding RNA 2655	ncRNA
57775	chr12	122992521	122992800	+	0	NA	exon (NM_020845, exon 16 of 26)	exon (NM_020845, exon 16 of 26)	12600	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
69580	chr14	97166651	97166750	+	0	NA	Intergenic	Intergenic	11843	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
210958	chr7	101411201	101411630	+	0	NA	intron (NM_133457, intron 1 of 12)	intron (NM_133457, intron 1 of 12)	48540	NM_001278563	136227		NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen type XXVI alpha 1 chain	protein-coding
236134	chrX	57909301	57911250	+	0	NA	exon (NM_007156, exon 1 of 1)	exon (NM_007156, exon 1 of 1)	183	NM_007156	7789		NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger X-linked duplicated A	protein-coding
214390	chr7	149780801	149781380	+	0	NA	intron (NR_163594, intron 12 of 102)	intron (NR_163594, intron 12 of 102)	5048	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
143989	chr20	32967921	32969280	+	0	NA	Intergenic	AluSz|SINE|Alu	35833	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
177675	chr4	121766801	121767000	+	0	NA	TTS (NR_024365)	TTS (NR_024365)	-1500	NR_169194	132332		NM_152399	ENSG00000164112	SMIM43	NEMEP|TMEM155	small integral membrane protein 43	protein-coding
21085	chr1	203320301	203321730	+	0	NA	Intergenic	Intergenic	15496	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
25112	chr10	3960851	3962080	+	0	NA	Intergenic	Intergenic	-29695	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
181499	chr5	43006301	43006500	+	0	NA	Intergenic	Intergenic	12411	NR_034086	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
197847	chr6	88907271	88907430	+	0	NA	intron (NM_001286428, intron 3 of 13)	THE1C|LTR|ERVL-MaLR	56268	NM_003800	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
85743	chr16	56700871	56701230	+	0	NA	Intergenic	L2c|LINE|L2	18580	NM_005952	4501		NM_005952	ENSG00000187193	MT1X	MT-1l|MT1	metallothionein 1X	protein-coding
146338	chr20	49238401	49239080	+	0	NA	intron (NM_017895, intron 14 of 20)	AluSx|SINE|Alu	19324	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
171644	chr3	197626151	197626600	+	0	NA	intron (NR_003266, intron 1 of 7)	intron (NR_003266, intron 1 of 7)	1506	NR_003266	220729		NR_003266	ENSG00000291091	SDHAP4	-	SDHA pseudogene 4	pseudo
210608	chr7	100433551	100433650	+	0	NA	3' UTR (NM_001194991, exon 5 of 5)	3' UTR (NM_001194991, exon 5 of 5)	2897	NM_145030	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
49870	chr12	38137871	38138030	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-178824	NM_001308340	144245		NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10 alpha-1,2-glucosyltransferase B	protein-coding
42641	chr11	72413971	72414530	+	0	NA	intron (NM_001258394, intron 2 of 17)	intron (NM_001258394, intron 2 of 17)	20281	NM_030813	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
80569	chr16	2854651	2855250	+	0	NA	intron (NM_022119, intron 4 of 5)	intron (NM_022119, intron 4 of 5)	3220	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
61696	chr13	74056871	74057030	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	76979	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
139536	chr2	224602851	224603530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-17793	NM_001257197	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
180107	chr5	1246501	1246900	+	0	NA	TTS (NM_182632)	TTS (NM_182632)	21319	NM_182632	348932		NM_182632	ENSG00000164363	SLC6A18	Xtrp2	solute carrier family 6 member 18	protein-coding
139811	chr2	230341851	230342250	+	0	NA	intron (NM_138402, intron 2 of 18)	L1HS|LINE|L1	14857	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
192892	chr6	27503501	27504480	+	0	NA	Intergenic	Intergenic	-30872	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
1601	chr1	3649371	3650290	+	0	NA	intron (NM_017818, intron 1 of 11)	CpG	273	NM_017818	49856		NM_017818	ENSG00000116213	WRAP73	WDR8	WD repeat containing, antisense to TP73	protein-coding
161229	chr3	39189671	39190600	+	0	NA	intron (NM_194293, intron 1 of 1)	intron (NM_194293, intron 1 of 1)	2460	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
171743	chr3	198080251	198081350	+	0	NA	promoter-TSS (NR_003291)	promoter-TSS (NR_003291)	-129	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
130622	chr2	86025251	86025550	+	0	NA	3' UTR (NM_015425, exon 34 of 34)	3' UTR (NM_015425, exon 34 of 34)	80486	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
98548	chr17	47681201	47681400	+	0	NA	intron (NM_002265, intron 21 of 21)	AluSg7|SINE|Alu	-13964	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
95116	chr17	34998151	34999180	+	0	NA	exon (NM_002311, exon 14 of 20)	exon (NM_002311, exon 14 of 20)	18153	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
35429	chr11	1437071	1437230	+	0	NA	intron (NM_001256630, intron 2 of 19)	intron (NM_001256630, intron 2 of 19)	25998	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
31421	chr10	95693171	95694600	+	0	NA	promoter-TSS (NM_015631)	promoter-TSS (NM_015631)	42	NM_015631	26123		NM_015631	ENSG00000119977	TCTN3	C10orf61|JBTS18|OFD4|TECT3	tectonic family member 3	protein-coding
81036	chr16	4299901	4300100	+	0	NA	Intergenic	L2c|LINE|L2	-14761	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
39755	chr11	61869621	61870280	+	0	NA	Intergenic	Intergenic	8328	NR_106804	102465446		NR_106804	ENSG00000277892	MIR6746	hsa-mir-6746	microRNA 6746	ncRNA
179778	chr5	320951	321050	+	0	NA	promoter-TSS (NM_001377236)	promoter-TSS (NM_001377236)	-714	NM_001377236	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
50873	chr12	49186401	49187490	+	0	NA	intron (NM_006009, intron 1 of 3)	intron (NM_006009, intron 1 of 3)	2135	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
127771	chr2	44169501	44170850	+	0	NA	intron (NM_177969, intron 1 of 4)	intron (NM_177969, intron 1 of 4)	1300	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
168344	chr3	141880951	141881280	+	0	NA	intron (NM_001679, intron 1 of 6)	AluSx1|SINE|Alu	4472	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
199382	chr6	116273571	116274130	+	0	NA	intron (NM_001322937, intron 2 of 6)	AluSq10|SINE|Alu	6080	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
80738	chr16	3137121	3137380	+	0	NA	non-coding (NR_104432, exon 2 of 6)	non-coding (NR_104432, exon 2 of 6)	2221	NM_004220	7760		NM_004220	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
75219	chr15	64851851	64852150	+	0	NA	intron (NM_025201, intron 2 of 5)	intron (NM_025201, intron 2 of 5)	10085	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
71211	chr14	105088701	105089380	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-5107	NR_110546	102723354		NR_110546		LINC02298	-	long intergenic non-protein coding RNA 2298	ncRNA
32932	chr10	110274971	110275480	+	0	NA	intron (NM_005962, intron 3 of 5)	intron (NM_005962, intron 3 of 5)	29695	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
104484	chr17	81127451	81127900	+	0	NA	intron (NM_001080395, intron 5 of 13)	intron (NM_001080395, intron 5 of 13)	-1726	NR_029897	442906		NR_029897	ENSG00000283604	MIR338	MIRN338|hsa-mir-338|mir-338	microRNA 338	ncRNA
116442	chr19	18031271	18031680	+	0	NA	Intergenic	Intergenic	23305	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
217372	chr8	28072571	28073430	+	0	NA	intron (NM_001010906, intron 2 of 18)	MamGypLTR3|LTR|Gypsy	10936	NM_001010906	389643		NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC|SLIPGC	nuclear GTPase, germinal center associated	protein-coding
2203	chr1	8663821	8664350	+	0	NA	intron (NM_001042681, intron 1 of 22)	L2b|LINE|L2	153555	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
154280	chr22	31640871	31641230	+	0	NA	intron (NM_001326416, intron 3 of 10)	AluSq2|SINE|Alu	-2527	NM_178022	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
124575	chr2	673771	673930	+	0	NA	intron (NM_001352680, intron 3 of 5)	intron (NM_001352680, intron 3 of 5)	2854	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
175557	chr4	75573451	75573950	+	0	NA	Intergenic	Intergenic	17634	NM_178497	152816		NM_178497	ENSG00000174792	ODAPH	AI2A4|C4orf26	odontogenesis associated phosphoprotein	protein-coding
59098	chr13	21141751	21141950	+	0	NA	intron (NM_005870, intron 2 of 3)	AluSx1|SINE|Alu	1304	NM_001366643	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
143548	chr20	31587621	31588530	+	0	NA	Intergenic	CpG	-14812	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
47335	chr12	1808801	1809080	+	0	NA	intron (NM_172364, intron 29 of 37)	intron (NM_172364, intron 29 of 37)	-11327	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
234413	chrX	16792071	16792430	+	0	NA	intron (NM_001168683, intron 1 of 7)	intron (NM_001168683, intron 1 of 7)	5784	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
13534	chr1	115064401	115064850	+	0	NA	intron (NM_001308315, intron 2 of 6)	intron (NM_001308315, intron 2 of 6)	24875	NM_001308315	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
17736	chr1	158968421	158968680	+	0	NA	intron (NM_198930, intron 7 of 7)	L1PA15|LINE|L1	-31426	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
161047	chr3	38016421	38016680	+	0	NA	exon (NM_001130964, exon 3 of 15)	exon (NM_001130964, exon 3 of 15)	7970	NM_001130964	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
235015	chrX	39969321	39969780	+	0	NA	Intergenic	Intergenic	128408	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
176248	chr4	86938951	86939830	+	0	NA	intron (NM_001166693, intron 1 of 20)	intron (NM_001166693, intron 1 of 20)	4388	NM_001166693	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
228144	chr9	96873871	96874230	+	0	NA	Intergenic	Intergenic	5150	NR_038890	100132781		NR_038890		LOC100132781	-	cyclin Y like 1 pseudogene	pseudo
183446	chr5	79021001	79021600	+	0	NA	non-coding (NR_104002, exon 12 of 12)	non-coding (NR_104002, exon 12 of 12)	-35342	NM_198709	411		NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
106786	chr18	23864501	23865280	+	0	NA	intron (NM_198129, intron 36 of 74)	intron (NM_198129, intron 36 of 74)	-8130	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
58387	chr12	131851151	131851550	+	0	NA	3' UTR (NM_016155, exon 10 of 10)	3' UTR (NM_016155, exon 10 of 10)	22957	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
144281	chr20	34674871	34675230	+	0	NA	intron (NM_080476, intron 1 of 11)	AluSp|SINE|Alu	2042	NM_080476	128869		NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1|GPIBD21|NEDBSS|PIG-U	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
122820	chr19	50398421	50399030	+	0	NA	promoter-TSS (NM_001308632)	promoter-TSS (NM_001308632)	-127	NM_001308632	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
66439	chr14	61534701	61534930	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	35379	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
167451	chr3	129090671	129090830	+	0	NA	3' UTR (NM_001204883, exon 4 of 4)	3' UTR (NM_001204883, exon 4 of 4)	29971	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
103676	chr17	78793351	78794650	+	0	NA	intron (NM_001385179, intron 20 of 20)	intron (NM_001385179, intron 20 of 20)	-11658	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
148610	chr21	5152301	5152500	+	0	NA	intron (NR_160695, intron 2 of 21)	Tigger1|DNA|TcMar-Tigger	2258	NR_160695	102724159		NM_001368238	ENSG00000275464	LOC102724159	-	periodic tryptophan protein 2 homolog	protein-coding
205306	chr7	12111501	12112030	+	0	NA	Intergenic	CpG	-99529	NM_018374	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
187005	chr5	139750021	139751150	+	0	NA	Intergenic	Intergenic	-4362	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
154334	chr22	32202151	32202930	+	0	NA	5' UTR (NM_001159546, exon 2 of 5)	5' UTR (NM_001159546, exon 2 of 5)	937	NM_001098527	10739		NM_006605	ENSG00000128253	RFPL2	RNF79	ret finger protein like 2	protein-coding
136110	chr2	173935171	173935530	+	0	NA	intron (NM_001172712, intron 4 of 6)	intron (NM_001172712, intron 4 of 6)	28530	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
141569	chr2	241561301	241561950	+	0	NA	intron (NM_032515, intron 2 of 4)	intron (NM_032515, intron 2 of 4)	-2482	NR_033346	100379249		NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	ncRNA
198040	chr6	90178921	90179500	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	117633	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
37584	chr11	19282121	19282830	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-40820	NM_001256372	79733		NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
33786	chr10	123134271	123134930	+	0	NA	Intergenic	CpG	-1370	NM_001105574	340784		NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
203170	chr6	167098821	167099090	+	0	NA	Intergenic	Intergenic	-12852	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
236616	chrX	74422521	74423130	+	0	NA	intron (NM_006517, intron 1 of 5)	CpG	1332	NM_006517	6567		NM_006517	ENSG00000147100	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16 member 2	protein-coding
220374	chr8	100105951	100106250	+	0	NA	promoter-TSS (NM_001286693)	promoter-TSS (NM_001286693)	-51	NM_015668	26166		NM_015668	ENSG00000132554	RGS22	CT145|PRTD-NY2	regulator of G protein signaling 22	protein-coding
79235	chr16	381321	382790	+	0	NA	promoter-TSS (NR_024453)	promoter-TSS (NR_024453)	-77	NM_021259	58986		NM_021259	ENSG00000129925	PGAP6	GPI-PLA2|M83|TMEM6|TMEM8|TMEM8A	post-GPI attachment to proteins 6	protein-coding
124462	chr19	58521101	58522330	+	0	NA	intron (NM_001316980, intron 1 of 2)	intron (NM_001316980, intron 1 of 2)	-1905	NM_001316979	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
151681	chr22	17120121	17121380	+	0	NA	promoter-TSS (NR_103793)	promoter-TSS (NR_103793)	610	NM_031890	27439		NM_031890	ENSG00000183307	TMEM121B	CECR6	transmembrane protein 121B	protein-coding
154001	chr22	30403201	30403730	+	0	NA	intron (NM_033382, intron 2 of 10)	intron (NM_033382, intron 2 of 10)	6447	NM_001291932	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
128994	chr2	64766471	64767400	+	0	NA	Intergenic	Intergenic	96696	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
11363	chr1	89632461	89634280	+	0	NA	promoter-TSS (NR_033981)	promoter-TSS (NR_033981)	250	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
8551	chr1	41241121	41243030	+	0	NA	5' UTR (NM_001350667, exon 1 of 17)	5' UTR (NM_001350667, exon 1 of 17)	231	NM_001350667	22955		NM_012236	ENSG00000010803	SCMH1	Scml3	Scm polycomb group protein homolog 1	protein-coding
91623	chr17	5394421	5394880	+	0	NA	intron (NM_002532, intron 9 of 16)	L2b|LINE|L2	-24991	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
144000	chr20	33076801	33077030	+	0	NA	Intergenic	Intergenic	-4597	NM_182519	149954		NM_182519	ENSG00000186191	BPIFB4	C20orf186|LPLUNC4|RY2G5|dJ726C3.5	BPI fold containing family B member 4	protein-coding
232291	chr9	134451921	134452380	+	0	NA	Intergenic	(ATCC)n|Simple_repeat|Simple_repeat	45590	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
119035	chr19	38948451	38948830	+	0	NA	exon (NM_024907, exon 3 of 6)	exon (NM_024907, exon 3 of 6)	4047	NM_148169	115290		NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
45802	chr11	119337601	119338850	+	0	NA	TTS (NM_015645)	TTS (NM_015645)	2658	NM_001278431	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
141680	chr2	241802501	241802700	+	0	NA	intron (NM_022134, intron 3 of 3)	G-rich|Low_complexity|Low_complexity	-6593	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
160402	chr3	28210921	28211850	+	0	NA	Intergenic	Intergenic	-30234	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
48996	chr12	13255671	13256130	+	0	NA	Intergenic	Intergenic	59174	NM_001423	2012		NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
7026	chr1	31920471	31921400	+	0	NA	intron (NM_080391, intron 1 of 5)	intron (NM_080391, intron 1 of 5)	16883	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
145894	chr20	45958501	45958700	+	0	NA	intron (NM_022095, intron 15 of 27)	MLT1J|LTR|ERVL-MaLR	13603	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
129355	chr2	68769671	68770730	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	-4710	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
118691	chr19	38095621	38095900	+	0	NA	intron (NM_015073, intron 4 of 21)	intron (NM_015073, intron 4 of 21)	-67336	NR_145800	109623473		NR_145800		SNORD152	-	small nucleolar RNA, C/D box 152	snoRNA
74638	chr15	60809321	60810180	+	0	NA	intron (NM_134261, intron 1 of 10)	HAL1|LINE|L1	128181	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
158611	chr3	4847601	4847800	+	0	NA	TTS (NM_001378452)	TTS (NM_001378452)	58801	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
197525	chr6	77087751	77088000	+	0	NA	Intergenic	L1PA2|LINE|L1	375616	NM_000863	3351		NM_000863	ENSG00000135312	HTR1B	5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine receptor 1B	protein-coding
72972	chr15	40568721	40570630	+	0	NA	exon (NM_152260, exon 1 of 3)	exon (NM_152260, exon 1 of 3)	376	NM_152260	27079		NM_152260	ENSG00000166133	RPUSD2	C15orf19|C18B11|PUS9	RNA pseudouridine synthase domain containing 2	protein-coding
80820	chr16	3469151	3469700	+	0	NA	intron (NM_001317095, intron 1 of 5)	intron (NM_001317095, intron 1 of 5)	11380	NM_001317097	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
13115	chr1	111631471	111631630	+	0	NA	intron (NM_001010935, intron 2 of 8)	MIR|SINE|MIR	-11152	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
88243	chr16	82432151	82432850	+	0	NA	Intergenic	Intergenic	-194469	NM_001257	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
19261	chr1	172698301	172698530	+	0	NA	Intergenic	Intergenic	39312	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
206067	chr7	27166051	27166150	+	0	NA	promoter-TSS (NM_152739)	promoter-TSS (NM_152739)	-563	NM_152739	3205		NM_002142	ENSG00000078399	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding
31509	chr10	96697221	96697480	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	23164	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
14204	chr1	143184671	143184830	+	0	NA	Intergenic	Intergenic	237842	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
35501	chr11	1527071	1527430	+	0	NA	Intergenic	Intergenic	-40471	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
136069	chr2	172977421	172978080	+	0	NA	intron (NR_164740, intron 9 of 30)	intron (NR_164740, intron 9 of 30)	49598	NM_001282901	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
120326	chr19	43529751	43530100	+	0	NA	Intergenic	Intergenic	-2724	NM_001320869	23474		NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1 persulfide dioxygenase	protein-coding
109289	chr19	552201	553080	+	0	NA	Intergenic	L1MC3|LINE|L1	8587	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
239287	chrY	14256401	14256880	+	0	NA	Intergenic	Intergenic	200413	NM_181880	353513		NM_181880	ENSG00000129862	VCY1B	BPY1B	variable charge Y-linked 1B	protein-coding
72301	chr15	31167701	31168650	+	0	NA	Intergenic	AluY|SINE|Alu	-6902	NM_001252020	4308		NM_002420	ENSG00000134160	TRPM1	CSNB1C|LTRPC1|MLSN1	transient receptor potential cation channel subfamily M member 1	protein-coding
203624	chr7	957721	957980	+	0	NA	Intergenic	Intergenic	-2443	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
50001	chr12	42241971	42242200	+	0	NA	Intergenic	AluSz|SINE|Alu	-3717	NM_001320080	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
147106	chr20	53892901	53893800	+	0	NA	Intergenic	Intergenic	-17641	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
192725	chr6	26361951	26362050	+	0	NA	Intergenic	L2a|LINE|L2	-3159	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
126913	chr2	32591471	32591630	+	0	NA	intron (NM_016252, intron 66 of 73)	intron (NM_016252, intron 66 of 73)	-16732	NR_125793	103752586		NR_125793	ENSG00000290864	BIRC6-AS2	linc-birc6|megamind	BIRC6 antisense RNA 2	ncRNA
100593	chr17	63438371	63438800	+	0	NA	intron (NM_001915, intron 1 of 5)	intron (NM_001915, intron 1 of 5)	1682	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
198454	chr6	106125901	106126630	+	0	NA	Intergenic	Intergenic	27324	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
18834	chr1	167680851	167681150	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	-40982	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
101696	chr17	68460201	68460970	+	0	NA	intron (NM_001278433, intron 1 of 10)	intron (NM_001278433, intron 1 of 10)	-3061	NR_135470	55062		NM_017983	ENSG00000070540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
39622	chr11	61427571	61427830	+	0	NA	intron (NR_165417, intron 2 of 9)	intron (NR_165417, intron 2 of 9)	2275	NM_024811	79869		NM_024811	ENSG00000149532	CPSF7	CFIm59	cleavage and polyadenylation specific factor 7	protein-coding
150009	chr21	37075401	37075600	+	0	NA	intron (NM_001353936, intron 1 of 36)	L1ME3Cz|LINE|L1	2246	NM_001330682	7267		NM_003316	ENSG00000182670	TTC3	DCRR1|RNF105|TPRDIII	tetratricopeptide repeat domain 3	protein-coding
201190	chr6	143307671	143307830	+	0	NA	intron (NR_158960, intron 4 of 6)	L1PA3|LINE|L1	134927	NM_001286259	134637		NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase tRNA specific 2	protein-coding
126282	chr2	27200251	27201080	+	0	NA	intron (NR_028323, intron 15 of 16)	intron (NR_028323, intron 15 of 16)	11603	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
33053	chr10	110866721	110866980	+	0	NA	Intergenic	Intergenic	4054	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
56303	chr12	112415201	112415930	+	0	NA	intron (NM_001320141, intron 1 of 8)	AluSz|SINE|Alu	3270	NM_001320141	6128		NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1|eL6	ribosomal protein L6	protein-coding
78719	chr15	98636001	98636400	+	0	NA	Intergenic	Intergenic	-12339	NM_001291858	3480		NM_000875	ENSG00000140443	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin like growth factor 1 receptor	protein-coding
203723	chr7	1088101	1088530	+	0	NA	5' UTR (NM_001098201, exon 1 of 2)	5' UTR (NM_001098201, exon 1 of 2)	202	NM_001098201	2852		NM_001505	ENSG00000164850	GPER1	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER	G protein-coupled estrogen receptor 1	protein-coding
58189	chr12	125066921	125067650	+	0	NA	intron (NM_023928, intron 1 of 17)	intron (NM_023928, intron 1 of 17)	1850	NM_001319839	65985		NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
214738	chr7	151048771	151049530	+	0	NA	exon (NM_004769, exon 1 of 11)	exon (NM_004769, exon 1 of 11)	619	NM_004769	9311		NM_004769	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid sensing ion channel subunit 3	protein-coding
101940	chr17	74491901	74492500	+	0	NA	Intergenic	AluSx|SINE|Alu	25566	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
219509	chr8	73977351	73977450	+	0	NA	intron (NM_017866, intron 1 of 2)	AluSz|SINE|Alu	1205	NM_017866	54968		NM_017866	ENSG00000175606	TMEM70	MC5DN2	transmembrane protein 70	protein-coding
209013	chr7	74292171	74292730	+	0	NA	intron (NM_032421, intron 1 of 15)	AluSz|SINE|Alu	3043	NM_003388	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
146461	chr20	49704471	49704930	+	0	NA	intron (NM_004776, intron 1 of 8)	AluYa5|SINE|Alu	9178	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
19592	chr1	179368971	179369130	+	0	NA	intron (NM_144696, intron 3 of 25)	intron (NM_144696, intron 3 of 25)	3006	NR_073544	126859		NM_144619	ENSG00000162779	AXDND1	C1orf125	axonemal dynein light chain domain containing 1	protein-coding
130400	chr2	85323001	85323230	+	0	NA	intron (NM_001206840, intron 3 of 3)	AluSx|SINE|Alu	4874	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
156791	chr22	41910081	41911780	+	0	NA	intron (NM_001353438, intron 2 of 3)	CpG-19130	4144	NM_001353438	440829		NM_001207020	ENSG00000234965	SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
213258	chr7	134547271	134547680	+	0	NA	Intergenic	HERVI-int|LTR|ERV1	-1635	NM_001080538	441282		NM_001080538	ENSG00000227471	AKR1B15	AKR1B10L|AKR1B10L, AK1R1B7|AKR1R1B7	aldo-keto reductase family 1 member B15	protein-coding
195828	chr6	41333621	41335030	+	0	NA	Intergenic	Intergenic	-1283	NM_004828	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
140289	chr2	232363571	232364350	+	0	NA	Intergenic	Intergenic	-14791	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
116711	chr19	18445751	18445850	+	0	NA	intron (NM_006532, intron 10 of 11)	intron (NM_006532, intron 10 of 11)	-7667	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
18017	chr1	160566451	160566780	+	0	NA	intron (NM_003874, intron 1 of 6)	L2b|LINE|L2	12881	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
236962	chrX	101347151	101347500	+	0	NA	3' UTR (NM_001145951, exon 2 of 2)	3' UTR (NM_001145951, exon 2 of 2)	1417	NM_001145951	1678		NM_004085	ENSG00000126953	TIMM8A	DDP|DDP1|DFN1|MTS|TIM8	translocase of inner mitochondrial membrane 8A	protein-coding
54901	chr12	96034901	96037250	+	0	NA	promoter-TSS (NM_000895)	promoter-TSS (NM_000895)	-414	NR_132659	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
238796	chrX	154386251	154386550	+	0	NA	Intergenic	Intergenic	7105	NM_000117	2010		NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
41747	chr11	66680851	66681180	+	0	NA	Intergenic	AluSx|SINE|Alu	-3128	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
73997	chr15	52043271	52043980	+	0	NA	intron (NM_002748, intron 1 of 5)	intron (NM_002748, intron 1 of 5)	24406	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
106264	chr18	12379501	12379850	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2448	NM_006796	10939		NM_006796	ENSG00000141385	AFG3L2	OPA12|SCA28|SPAX5	AFG3 like matrix AAA peptidase subunit 2	protein-coding
146790	chr20	50925301	50926230	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-5219	NR_110007	101927631		NR_110007	ENSG00000259456	ADNP-AS1	-	ADNP antisense RNA 1	ncRNA
59964	chr13	31909821	31910100	+	0	NA	intron (NR_027062, intron 1 of 3)	intron (NR_027062, intron 1 of 3)	63177	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
149593	chr21	33293701	33294400	+	0	NA	intron (NM_000628, intron 6 of 6)	intron (NM_000628, intron 6 of 6)	27683	NM_000628	3588		NM_000628	ENSG00000243646	IL10RB	CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IBD25|IL-10R2|IL-10RB	interleukin 10 receptor subunit beta	protein-coding
7341	chr1	32742771	32742930	+	0	NA	intron (NM_020888, intron 1 of 6)	intron (NM_020888, intron 1 of 6)	1020	NM_020888	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
156460	chr22	41251551	41251650	+	0	NA	intron (NM_001278651, intron 13 of 16)	AluJr|SINE|Alu	1450	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
193188	chr6	29732171	29732580	+	0	NA	intron (NR_026972, intron 4 of 5).3	intron (NR_026972, intron 4 of 5).3	8941	NM_001098478	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
129967	chr2	73981171	73981830	+	0	NA	promoter-TSS (NR_104029)	promoter-TSS (NR_104029)	-61	NR_104029	100874048		NR_104029		DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
139084	chr2	218874451	218874550	+	0	NA	TTS (NM_006522)	TTS (NM_006522)	-6352	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
54372	chr12	89759071	89759230	+	0	NA	Intergenic	L1PA16|LINE|L1	-49784	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
3322	chr1	15416881	15418350	+	0	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	7727	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
166112	chr3	111069971	111073250	+	0	NA	promoter-TSS (NM_015480)	promoter-TSS (NM_015480)	-206	NM_001243286	25945		NM_015480	ENSG00000177707	NECTIN3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3	nectin cell adhesion molecule 3	protein-coding
92887	chr17	16436101	16436580	+	0	NA	intron (NM_016113, intron 14 of 14)	intron (NM_016113, intron 14 of 14)	-2647	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
34678	chr10	133359001	133359200	+	0	NA	Intergenic	Intergenic	-1081	NM_001301828	282969		NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
216185	chr8	11807971	11808930	+	0	NA	promoter-TSS (NM_001287750)	promoter-TSS (NM_001287750)	33	NM_001287750	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
153832	chr22	29882451	29884330	+	0	NA	intron (NM_153051, intron 1 of 18)	CpG	216	NM_021090	8897		NM_021090	ENSG00000100330	MTMR3	FYVE-DSP1|ZFYVE10	myotubularin related protein 3	protein-coding
189463	chr5	173055301	173056500	+	0	NA	promoter-TSS (NM_001168394)	promoter-TSS (NM_001168394)	-452	NM_001168393	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
209319	chr7	76149971	76150600	+	0	NA	Intergenic	Intergenic	-41523	NR_135079	101927126		NR_135079		GTF2IP7	-	general transcription factor IIi pseudogene 7	pseudo
76244	chr15	73984751	73985250	+	0	NA	intron (NM_004809, intron 5 of 6)	intron (NM_004809, intron 5 of 6)	7295	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
139317	chr2	219540671	219540830	+	0	NA	intron (NM_001195731, intron 3 of 3)	intron (NM_001195731, intron 3 of 3)	2347	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
142285	chr20	3224321	3224580	+	0	NA	TTS (NM_001351739)	TTS (NM_001351739)	13277	NM_032034	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
63737	chr14	21220871	21221350	+	0	NA	intron (NM_001077443, intron 4 of 7)	intron (NM_001077443, intron 4 of 7)	-14210	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
28124	chr10	43415451	43415950	+	0	NA	Intergenic	AluSp|SINE|Alu	1740	NR_145740	109616985		NR_145740	ENSG00000221400	SNORD3J	-	small nucleolar RNA, C/D box 3J	snoRNA
226312	chr9	68949621	68949880	+	0	NA	intron (NM_001278253, intron 13 of 13)	MER57B1|LTR|ERV1	26091	NR_110647	101927069		NR_110647		LOC101927069	-	uncharacterized LOC101927069	ncRNA
39275	chr11	57903871	57904230	+	0	NA	Intergenic	Intergenic	-119831	NM_001005212	219956		NM_001005212	ENSG00000186509	OR9Q1	-	olfactory receptor family 9 subfamily Q member 1	protein-coding
94597	chr17	29729201	29729800	+	0	NA	intron (NM_033389, intron 2 of 14)	L1MA3|LINE|L1	31932	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
238768	chrX	154356221	154356850	+	0	NA	intron (NM_001456, intron 29 of 46)	intron (NM_001456, intron 29 of 46)	18099	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
108572	chr18	75025351	75025450	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	180113	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
79313	chr16	559971	560130	+	0	NA	promoter-TSS (NM_145270)	promoter-TSS (NM_145270)	-344	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
122571	chr19	49674751	49674850	+	0	NA	TTS (NM_001040668)	TTS (NM_001040668)	-2471	NM_198318	3276		NM_001536	ENSG00000126457	PRMT1	ANM1|HCP1|HRMT1L2|IR1B4	protein arginine methyltransferase 1	protein-coding
99905	chr17	56909321	56909950	+	0	NA	intron (NM_005082, intron 1 of 8)	AluJb|SINE|Alu	4414	NM_005082	7706		NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
196255	chr6	42911571	42911730	+	0	NA	Intergenic	CpG	-4339	NM_001243169	171558		NM_138296	ENSG00000171611	PTCRA	PT-ALPHA|PTA	pre T cell antigen receptor alpha	protein-coding
186591	chr5	138506771	138506930	+	0	NA	non-coding (NR_157090, exon 10 of 10)	non-coding (NR_157090, exon 10 of 10)	34861	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
5638	chr1	26232501	26232930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1485	NM_001319944	64793		NM_022778	ENSG00000130695	CEP85	CCDC21	centrosomal protein 85	protein-coding
125254	chr2	10426821	10427280	+	0	NA	3' UTR (NM_001258357, exon 5 of 5)	3' UTR (NM_001258357, exon 5 of 5)	19799	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
103649	chr17	78765371	78765950	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	16548	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
115201	chr19	14473351	14473930	+	0	NA	exon (NM_000955, exon 2 of 3)	exon (NM_000955, exon 2 of 3)	1714	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
233647	chrX	872751	872850	+	0	NA	Intergenic	(CCTCC)n|Simple_repeat|Simple_repeat	248456	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
215337	chr7	157365101	157365300	+	0	NA	intron (NM_001363676, intron 3 of 6)	AluJb|SINE|Alu	28196	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
59328	chr13	24491801	24492000	+	0	NA	intron (NM_006437, intron 9 of 33)	MLT1L|LTR|ERVL-MaLR	20878	NM_006437	143		NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	poly(ADP-ribose) polymerase family member 4	protein-coding
234295	chrX	13690551	13691300	+	0	NA	intron (NM_001195328, intron 1 of 1)	MIRb|SINE|MIR	1797	NM_004251	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
93141	chr17	17740271	17740430	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	25952	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
12943	chr1	110765871	110766530	+	0	NA	Intergenic	Intergenic	-91260	NM_002232	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
57255	chr12	121577721	121578000	+	0	NA	intron (NM_001005366, intron 2 of 22)	intron (NM_001005366, intron 2 of 22)	2386	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
42010	chr11	67407871	67408700	+	0	NA	intron (NM_001369495, intron 7 of 8)	MIR3|SINE|MIR	4202	NM_001369496	374403		NM_198517	ENSG00000175463	TBC1D10C	CARABIN|EPI64C	TBC1 domain family member 10C	protein-coding
136363	chr2	176093571	176093930	+	0	NA	intron (NM_000523, intron 1 of 1)	intron (NM_000523, intron 1 of 1)	1029	NM_000523	3239		NM_000523	ENSG00000128714	HOXD13	BDE|BDSD|HOX4I|SPD|SPD1	homeobox D13	protein-coding
183479	chr5	79258321	79258830	+	0	NA	intron (NM_152405, intron 1 of 10)	MER52D|LTR|ERV1	22444	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
160620	chr3	31509401	31509800	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-23325	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
225057	chr9	33225421	33226100	+	0	NA	Intergenic	Intergenic	-14407	NM_014471	27290		NM_014471	ENSG00000122711	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor Kazal type 4	protein-coding
186417	chr5	135560721	135561080	+	0	NA	Intergenic	Intergenic	18091	NM_004887	9547		NM_004887	ENSG00000145824	CXCL14	BMAC|BRAK|KEC|KS1|MIP-2g|MIP2G|NJAC|SCYB14	C-X-C motif chemokine ligand 14	protein-coding
190729	chr6	327871	328480	+	0	NA	intron (NR_104473, intron 3 of 5)	intron (NR_104473, intron 3 of 5)	36118	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
205581	chr7	21383021	21384750	+	0	NA	Intergenic	LTR83|LTR|ERVL	-44198	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
197341	chr6	73437701	73437900	+	0	NA	intron (NM_138441, intron 3 of 4)	AluSx3|SINE|Alu	14497	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
47213	chr12	854151	854450	+	0	NA	intron (NM_018979, intron 4 of 27)	AluJo|SINE|Alu	78776	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
115080	chr19	14214001	14214550	+	0	NA	Intergenic	Intergenic	-8106	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
150303	chr21	41997901	41998830	+	0	NA	intron (NM_020727, intron 1 of 1)	AluSx|SINE|Alu	-10829	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
46416	chr11	126368851	126368950	+	0	NA	intron (NM_001348397, intron 2 of 11)	MER91A|DNA|hAT-Tip100	12888	NM_001348397	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
93848	chr17	20998721	20999380	+	0	NA	TTS (NM_015276)	TTS (NM_015276)	43961	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
152005	chr22	19259651	19260100	+	0	NA	intron (NM_001835, intron 2 of 31)	Tigger1|DNA|TcMar-Tigger	31844	NM_007098	8218		NM_001835	ENSG00000070371	CLTCL1	CHC22|CLH22|CLTCL|CLTD	clathrin heavy chain like 1	protein-coding
34367	chr10	132250221	132250850	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	-1427	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
68361	chr14	77718351	77718450	+	0	NA	TTS (NM_031210)	TTS (NM_031210)	10297	NM_031210	81892		NM_031210	ENSG00000119705	SLIRP	C14orf156|DC50|PD04872	SRA stem-loop interacting RNA binding protein	protein-coding
108465	chr18	70600771	70601130	+	0	NA	Intergenic	L1MB3|LINE|L1	50004	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
101668	chr17	68312851	68313350	+	0	NA	intron (NM_001352901, intron 2 of 11)	AluY|SINE|Alu	20965	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
44732	chr11	111925671	111925830	+	0	NA	intron (NM_080659, intron 3 of 3)	intron (NM_080659, intron 3 of 3)	-1394	NM_001278542	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
188961	chr5	161611471	161611730	+	0	NA	Intergenic	L1PA2|LINE|L1	-63196	NM_000813	2561		NM_000813	ENSG00000145864	GABRB2	DEE92|ICEE2	gamma-aminobutyric acid type A receptor subunit beta2	protein-coding
197896	chr6	89348801	89349350	+	0	NA	intron (NM_016021, intron 1 of 7)	AluJb|SINE|Alu	3647	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
159021	chr3	10707621	10708130	+	0	NA	Intergenic	CpG	56334	NR_152730	285370		NR_027102	ENSG00000226567	LINC00606	-	long intergenic non-protein coding RNA 606	ncRNA
179213	chr4	173505921	173506330	+	0	NA	intron (NM_001329597, intron 1 of 3)	intron (NM_001329597, intron 1 of 3)	13019	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
113791	chr19	10557971	10558550	+	0	NA	intron (NM_023008, intron 12 of 18)	intron (NM_023008, intron 12 of 18)	6138	NR_031603	100302226		NR_031603	ENSG00000221410	MIR1238	MIRN1238|hsa-mir-1238	microRNA 1238	ncRNA
153711	chr22	29282521	29283000	+	0	NA	intron (NM_001163287, intron 6 of 8)	AluY|SINE|Alu	14492	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
53957	chr12	71874721	71874980	+	0	NA	intron (NR_027449, intron 3 of 15)	AluSx1|SINE|Alu	-23867	NR_024072	729633		NR_024072		MRS2P2	-	MRS2 pseudogene 2	pseudo
45961	chr11	121446821	121447680	+	0	NA	Intergenic	Intergenic	-5064	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
41969	chr11	67363521	67363900	+	0	NA	TTS (NM_001166212)	TTS (NM_001166212)	9888	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
223143	chr8	143514401	143514600	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	-8252	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
74014	chr15	52171351	52172250	+	0	NA	intron (NM_016194, intron 3 of 12)	intron (NM_016194, intron 3 of 12)	7891	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
179982	chr5	878571	879080	+	0	NA	intron (NM_001375861, intron 11 of 16)	intron (NM_001375861, intron 11 of 16)	13697	NR_134296								
163049	chr3	49901601	49902300	+	0	NA	intron (NM_002447, intron 1 of 19)	(GTG)n|Simple_repeat|Simple_repeat	1687	NM_001318913	4486		NM_002447	ENSG00000164078	MST1R	CD136|CDw136|NPCA3|PTK8|RON|SEA|p185-Ron	macrophage stimulating 1 receptor	protein-coding
180150	chr5	1376171	1376330	+	0	NA	intron (NR_125810, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	3823	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
109853	chr19	1222901	1224130	+	0	NA	intron (NM_000455, intron 8 of 9)	intron (NM_000455, intron 8 of 9)	14490	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
9693	chr1	53024251	53024350	+	0	NA	intron (NM_001007100, intron 1 of 4)	L1MB3|LINE|L1	9362	NM_001007250	6342		NM_002979	ENSG00000116171	SCP2	NLTP|NSL-TP|SCOX|SCP-2|SCP-CHI|SCP-X|SCPX	sterol carrier protein 2	protein-coding
113460	chr19	9864771	9865400	+	0	NA	intron (NM_058164, intron 1 of 5)	intron (NM_058164, intron 1 of 5)	-6910	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
108776	chr18	77147521	77148300	+	0	NA	Intergenic	Intergenic	-15127	NM_001025101	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
143710	chr20	32247871	32248230	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	10255	NR_031726	100302183		NR_031726	ENSG00000284125	MIR1825	MIRN1825|hsa-mir-1825	microRNA 1825	ncRNA
11873	chr1	93093151	93093650	+	0	NA	intron (NM_001164393, intron 1 of 12)	HAL1|LINE|L1	14117	NM_007358	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
46175	chr11	123159321	123159600	+	0	NA	intron (NM_024769, intron 1 of 6)	intron (NM_024769, intron 1 of 6)	35788	NM_024769	79827		NM_024769	ENSG00000166250	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR like membrane protein	protein-coding
163192	chr3	50211271	50211630	+	0	NA	intron (NM_006841, intron 1 of 15)	L2c|LINE|L2	6179	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
149020	chr21	14548971	14549130	+	0	NA	intron (NM_001256370, intron 2 of 8)	intron (NM_001256370, intron 2 of 8)	-2690	NM_001286523	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
120415	chr19	43809821	43810300	+	0	NA	intron (NM_182573, intron 1 of 4)	Zaphod2|DNA|hAT-Tip100	-7613	NM_001031749	284348		NM_182573	ENSG00000159871	LYPD5	HALDISIN|PRO4356	LY6/PLAUR domain containing 5	protein-coding
68003	chr14	75004271	75004530	+	0	NA	intron (NM_014239, intron 3 of 7)	intron (NM_014239, intron 3 of 7)	1479	NM_014239	8892		NM_014239	ENSG00000119718	EIF2B2	EIF-2Bbeta|EIF2B|EIF2Bbeta|VWM2	eukaryotic translation initiation factor 2B subunit beta	protein-coding
78207	chr15	90594071	90595200	+	0	NA	intron (NM_001042574, intron 3 of 14)	MIRb|SINE|MIR	64712	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
65026	chr14	39115521	39116080	+	0	NA	intron (NM_003616, intron 2 of 9)	L2a|LINE|L2	1477	NM_003616	8487		NM_003616	ENSG00000092208	GEMIN2	SIP1|SIP1-delta	gem nuclear organelle associated protein 2	protein-coding
199639	chr6	121686401	121686800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	250954	NM_000165	2697		NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
72609	chr15	37097901	37098180	+	0	NA	exon (NM_001220482, exon 3 of 13)	exon (NM_001220482, exon 3 of 13)	656	NM_172315	4212		NM_002399	ENSG00000134138	MEIS2	CPCMR|HsT18361|MRG1	Meis homeobox 2	protein-coding
182984	chr5	71887351	71887980	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	168390	NM_004291	9607		NM_004291	ENSG00000164326	CARTPT	CART	CART prepropeptide	protein-coding
188855	chr5	159257821	159258080	+	0	NA	Intergenic	Ricksha_c|DNA|MULE-MuDR	-5340	NM_145049	134510		NM_145049	ENSG00000164332	UBLCP1	CPUB1	ubiquitin like domain containing CTD phosphatase 1	protein-coding
215441	chr7	157694071	157694230	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	-119728	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
176267	chr4	87012451	87013200	+	0	NA	intron (NM_001313960, intron 1 of 17)	intron (NM_001313960, intron 1 of 17)	5824	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
161068	chr3	38080701	38081180	+	0	NA	intron (NM_001321153, intron 6 of 36)	SVA_F|Retroposon|SVA	41732	NM_007335	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
70914	chr14	104104221	104104300	+	0	NA	intron (NM_001080464, intron 7 of 15)	intron (NM_001080464, intron 7 of 15)	-13145	NR_029620	406986		NR_029620	ENSG00000207568	MIR203A	MIR203|MIRN203|hsa-mir-203a|miR-203|miRNA203|mir-203a	microRNA 203a	ncRNA
3771	chr1	16690871	16691030	+	0	NA	TTS (NR_026567)	TTS (NR_026567)	9695	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
53435	chr12	65166901	65167100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2583	NM_001167614	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
44536	chr11	107981471	107981630	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	-27348	NM_003478	8065		NM_003478	ENSG00000166266	CUL5	CUL-5|VACM-1|VACM1	cullin 5	protein-coding
74837	chr15	63505201	63505900	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	957	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
79126	chr16	218951	219900	+	0	NA	intron (NM_018032, intron 3 of 8)	(AAAT)n|Simple_repeat|Simple_repeat	10024	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
230573	chr9	128549021	128549280	+	0	NA	intron (NR_031672, intron 2 of 2).4	intron (NR_031672, intron 2 of 2).4	-3437	NM_001375318	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
120688	chr19	45158301	45159100	+	0	NA	exon (NM_198478, exon 2 of 4)	exon (NM_198478, exon 2 of 4)	1450	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
123993	chr19	55447521	55448480	+	0	NA	Intergenic	Intergenic	-5137	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
140853	chr2	237429101	237429330	+	0	NA	Intergenic	MIR3|SINE|MIR	-15008	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
143567	chr20	31641551	31641850	+	0	NA	intron (NM_032609, intron 3 of 4)	intron (NM_032609, intron 3 of 4)	3788	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
63620	chr14	20631771	20632000	+	0	NA	Intergenic	Intergenic	9806	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
18140	chr1	160749051	160749430	+	0	NA	intron (NM_001282588, intron 2 of 3)	intron (NM_001282588, intron 2 of 3)	9993	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
169730	chr3	172332171	172332930	+	0	NA	intron (NM_022763, intron 13 of 25)	L2a|LINE|L2	115906	NM_004122	2693		NM_004122	ENSG00000121853	GHSR	GHDP|GHS-R1a|GHSR-1a	growth hormone secretagogue receptor	protein-coding
166533	chr3	114764271	114764450	+	0	NA	intron (NM_001164343, intron 4 of 11)	intron (NM_001164343, intron 4 of 11)	-5253	NM_001164345	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
137558	chr2	197240131	197241450	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	42799	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
85784	chr16	56943551	56943650	+	0	NA	3' UTR (NM_001272103, exon 8 of 8)	3' UTR (NM_001272103, exon 8 of 8)	11458	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
131170	chr2	92036121	92036380	+	0	NA	Intergenic	Intergenic	95117	NR_027714	440888		NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
197437	chr6	73660551	73660650	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-6608	NM_001382634	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
99229	chr17	49647021	49647430	+	0	NA	promoter-TSS (NM_001370731)	promoter-TSS (NM_001370731)	-707	NM_001370731	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
24797	chr10	12721	13500	+	0	NA	intron (NR_149137, intron 2 of 2)	intron (NR_149137, intron 2 of 2)	1389	NR_110795	102723376		NR_110795		LOC102723376	-	uncharacterized LOC102723376	ncRNA
210521	chr7	100223801	100224550	+	0	NA	intron (NR_166147, intron 2 of 4)	intron (NR_166147, intron 2 of 4)	4927	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
100020	chr17	57954621	57955660	+	0	NA	intron (NM_001271875, intron 1 of 10)	CpG	272	NM_001271875	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
231676	chr9	131692321	131692580	+	0	NA	intron (NM_001377935, intron 1 of 26)	MER65-int|LTR|ERV1	17392	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
86421	chr16	66871451	66871750	+	0	NA	Intergenic	AluJo|SINE|Alu	-8915	NM_001329931	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
25248	chr10	6052511	6055080	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	8572	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
80075	chr16	1990901	1991590	+	0	NA	intron (NM_004209, intron 1 of 3)	CpG	1275	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
122419	chr19	49450671	49450830	+	0	NA	intron (NM_017916, intron 2 of 8)	(TC)n|Simple_repeat|Simple_repeat	1064	NM_017916	55011		NM_017916	ENSG00000104872	PIH1D1	DNAAF14|MOT48|NOP17|Pih1	PIH1 domain containing 1	protein-coding
56061	chr12	110565251	110565550	+	0	NA	intron (NM_139283, intron 1 of 5)	AluSg7|SINE|Alu	17918	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
144057	chr20	33669671	33670230	+	0	NA	intron (NM_031232, intron 3 of 11)	L2c|LINE|L2	3007	NM_001024675	170487		NM_001024675	ENSG00000288649	ACTL10	C20orf134|dJ63M2.2	actin like 10	protein-coding
104275	chr17	80799351	80799650	+	0	NA	intron (NM_020761, intron 7 of 33)	intron (NM_020761, intron 7 of 33)	6132	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
37543	chr11	18696471	18696630	+	0	NA	Intergenic	MamTip1|DNA|hAT-Tip100	-2229	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
148917	chr21	9115871	9116430	+	0	NA	intron (NR_038329, intron 2 of 2)	intron (NR_038329, intron 2 of 2)	13611	NR_038327	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
161096	chr3	38151451	38152650	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	12299	NR_164663	4615		NM_002468	ENSG00000172936	MYD88	IMD68|MYD88D|WM1	MYD88 innate immune signal transduction adaptor	protein-coding
63571	chr14	20440421	20441230	+	0	NA	Intergenic	Intergenic	-4659	NM_001365790	123103		NM_001109997	ENSG00000185271	KLHL33	-	kelch like family member 33	protein-coding
183497	chr5	79288071	79288230	+	0	NA	intron (NM_152405, intron 2 of 10)	intron (NM_152405, intron 2 of 10)	52019	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
77260	chr15	81322071	81322480	+	0	NA	intron (NR_135013, intron 2 of 4)	intron (NR_135013, intron 2 of 4)	1866	NR_135013	80765		NM_030574	ENSG00000172345	STARD5	-	StAR related lipid transfer domain containing 5	protein-coding
50363	chr12	47206571	47206800	+	0	NA	intron (NM_001281429, intron 2 of 2)	AluJr|SINE|Alu	9758	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
36036	chr11	2923751	2924680	+	0	NA	intron (NM_183233, intron 10 of 10)	intron (NM_183233, intron 10 of 10)	5205	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
52806	chr12	56756671	56756830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4427	NM_000946	5557		NM_000946	ENSG00000198056	PRIM1	PDIL|p49	DNA primase subunit 1	protein-coding
43188	chr11	75407271	75407430	+	0	NA	TTS (NM_001260506)	TTS (NM_001260506)	2929	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
141987	chr20	1390451	1391430	+	0	NA	intron (NM_000801, intron 2 of 4)	intron (NM_000801, intron 2 of 4)	2021	NR_106929	102465524		NR_106929	ENSG00000284436	MIR6869	hsa-mir-6869	microRNA 6869	ncRNA
125817	chr2	24122971	24123930	+	0	NA	promoter-TSS (NM_001145710)	promoter-TSS (NM_001145710)	-19	NM_001145710	375190		NM_198553	ENSG00000219626	FAM228B	-	family with sequence similarity 228 member B	protein-coding
32430	chr10	102501271	102502400	+	0	NA	intron (NM_005736, intron 1 of 10)	MIRc|SINE|MIR	877	NM_005736	10121		NM_005736	ENSG00000138107	ACTR1A	ARP1|Arp1A|CTRN1	actin related protein 1A	protein-coding
62267	chr13	98571901	98573330	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	4492	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
72063	chr15	28876121	28876780	+	0	NA	Intergenic	Intergenic	-9524	NM_001353789	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
195	chr1	688171	688530	+	0	NA	Intergenic	Intergenic	-1696	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
43881	chr11	88341621	88342680	+	0	NA	Intergenic	MSTC-int|LTR|ERVL-MaLR	-4414	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
77295	chr15	82338401	82338800	+	0	NA	Intergenic	Intergenic	10875	NM_001164465	647042		NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family like 10	protein-coding
230240	chr9	127880321	127880830	+	0	NA	promoter-TSS (NM_001318121)	promoter-TSS (NM_001318121)	-954	NM_001318121	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
68669	chr14	90275071	90275600	+	0	NA	TTS (NM_002802)	TTS (NM_002802)	17396	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
116832	chr19	18574621	18574880	+	0	NA	intron (NM_003333, intron 3 of 4)	intron (NM_003333, intron 3 of 4)	1910	NM_001321021	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
84975	chr16	31439051	31439350	+	0	NA	intron (NM_001353381, intron 1 of 1)	L1ME1|LINE|L1	3589	NM_001136509	283933		NM_001136509	ENSG00000176723	ZNF843	-	zinc finger protein 843	protein-coding
163343	chr3	50427621	50428830	+	0	NA	intron (NM_006030, intron 3 of 37)	MER20|DNA|hAT-Charlie	62862	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
6808	chr1	30910501	30910780	+	0	NA	Intergenic	L3|LINE|CR1	-1882	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
20233	chr1	193190451	193190750	+	0	NA	intron (NM_024529, intron 10 of 16)	intron (NM_024529, intron 10 of 16)	-3987	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
82418	chr16	16294171	16294330	+	0	NA	exon (NM_001004067, exon 31 of 31).4	exon (NM_001004067, exon 31 of 31).4	-5909	NR_036145	100423006		NR_036145	ENSG00000266454	MIR3179-3	-	microRNA 3179-3	ncRNA
19796	chr1	182588301	182589680	+	0	NA	intron (NM_021133, intron 1 of 6)	intron (NM_021133, intron 1 of 6)	266	NM_021133	6041		NM_021133	ENSG00000135828	RNASEL	PRCA1|RNS4	ribonuclease L	protein-coding
197868	chr6	89086501	89086730	+	0	NA	Intergenic	L2|LINE|L2	5864	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
199701	chr6	125126551	125126650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-27173	NM_001003396	7164		NM_003287	ENSG00000111907	TPD52L1	D53|TPD53	TPD52 like 1	protein-coding
204451	chr7	4241001	4241200	+	0	NA	intron (NM_001079653, intron 16 of 19)	intron (NM_001079653, intron 16 of 19)	-106263	NR_158215	105375131		NR_158215		LOC105375131	-	uncharacterized LOC105375131	ncRNA
13476	chr1	114578201	114579150	+	0	NA	intron (NM_005872, intron 2 of 6)	L2c|LINE|L2	2940	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
49360	chr12	22328851	22329150	+	0	NA	intron (NM_001304450, intron 1 of 3)	L2b|LINE|L2	5714	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
38882	chr11	47389251	47390480	+	0	NA	Intergenic	Intergenic	-11105	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
163227	chr3	50258551	50258650	+	0	NA	3' UTR (NM_001166425, exon 9 of 9)	3' UTR (NM_001166425, exon 9 of 9)	8771	NR_110702	101928931		NR_110702		SEMA3B-AS1	-	SEMA3B antisense RNA 1 (head to head)	ncRNA
212376	chr7	127856571	127857350	+	0	NA	intron (NM_014390, intron 12 of 23)	intron (NM_014390, intron 12 of 23)	-140549	NR_027330	27099		NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
238592	chrX	153903371	153904400	+	0	NA	promoter-TSS (NM_000054)	promoter-TSS (NM_000054)	-829	NM_000054	554		NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|NDI1|V2R	arginine vasopressin receptor 2	protein-coding
223392	chr8	143918421	143918950	+	0	NA	exon (NM_000445, exon 33 of 33)	exon (NM_000445, exon 33 of 33)	20912	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
175500	chr4	73262321	73262700	+	0	NA	Intergenic	MLT1J1-int|LTR|ERVL-MaLR	-3712	NM_032217	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
57038	chr12	120748301	120748500	+	0	NA	Intergenic	MER68B|LTR|ERVL	22574	NM_001302554	35		NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	acyl-CoA dehydrogenase short chain	protein-coding
183836	chr5	86665951	86666330	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	45634	NR_145802	109623460		NR_037402		SNORD138	MIR3607|mir-3607	small nucleolar RNA, C/D box 138	snoRNA
95093	chr17	34378751	34378850	+	0	NA	Intergenic	Intergenic	-15567	NM_002981	6346		NM_002981	ENSG00000108702	CCL1	I-309|P500|SCYA1|SISe|TCA3	C-C motif chemokine ligand 1	protein-coding
42147	chr11	67659121	67659700	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8680	NM_080658	91703		NM_080658	ENSG00000132744	ACY3	ACY-3|HCBP1	aminoacylase 3	protein-coding
43723	chr11	86050171	86050730	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	18634	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
49395	chr12	22473321	22473830	+	0	NA	intron (NR_169598, intron 16 of 24)	intron (NR_169598, intron 16 of 24)	70622	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
71842	chr15	22222921	22223530	+	0	NA	Intergenic	AluJo|SINE|Alu	2104	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
183511	chr5	79553101	79553600	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-39216	NM_004272	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
112324	chr19	5907001	5908250	+	0	NA	intron (NM_001017921, intron 1 of 1)	AluSx|SINE|Alu	2753	NM_001017921	400673		NM_001017921	ENSG00000187650	VMAC	-	vimentin type intermediate filament associated coiled-coil protein	protein-coding
65396	chr14	50788051	50788700	+	0	NA	intron (NM_020921, intron 5 of 30)	Chap1_Mam|DNA|hAT-Charlie	-33422	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
101647	chr17	68255401	68256700	+	0	NA	intron (NM_001346474, intron 7 of 7)	intron (NM_001346474, intron 7 of 7)	-3120	NM_001352903	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
231649	chr9	131630201	131630750	+	0	NA	intron (NM_001377935, intron 5 of 26)	intron (NM_001377935, intron 5 of 26)	20928	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
42349	chr11	68528551	68529150	+	0	NA	intron (NM_001352348, intron 3 of 24)	intron (NM_001352348, intron 3 of 24)	68098	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
82850	chr16	21515171	21515530	+	0	NA	Intergenic	Intergenic	5094	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
83330	chr16	24774151	24774450	+	0	NA	intron (NM_001330520, intron 4 of 23)	intron (NM_001330520, intron 4 of 23)	44649	NM_014494	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
162888	chr3	49386221	49386480	+	0	NA	intron (NM_001313943, intron 1 of 5)	intron (NM_001313943, intron 1 of 5)	25626	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
16298	chr1	154171901	154172100	+	0	NA	intron (NM_001043351, intron 4 of 7)	intron (NM_001043351, intron 4 of 7)	6204	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
68871	chr14	91313771	91314680	+	0	NA	intron (NM_001080414, intron 14 of 29)	intron (NM_001080414, intron 14 of 29)	-60345	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
221372	chr8	123386721	123386980	+	0	NA	intron (NM_014109, intron 1 of 27)	intron (NM_014109, intron 1 of 27)	9597	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
129589	chr2	70078521	70078800	+	0	NA	intron (NR_033872, intron 4 of 10)	L2a|LINE|L2	8355	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
25951	chr10	11515501	11515950	+	0	NA	intron (NM_014688, intron 5 of 14)	intron (NM_014688, intron 5 of 14)	16555	NM_001080491	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
218175	chr8	41966521	41966780	+	0	NA	intron (NM_001305878, intron 8 of 13)	intron (NM_001305878, intron 8 of 13)	-69909	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
21959	chr1	208236071	208236680	+	0	NA	intron (NM_025179, intron 1 of 31)	intron (NM_025179, intron 1 of 31)	8009	NM_025179	5362		NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
92688	chr17	13337951	13338130	+	0	NA	Intergenic	Intergenic	-31280	NR_146885	105371541		NR_146885	ENSG00000234634	LINC02093	-	long intergenic non-protein coding RNA 2093	ncRNA
34877	chr11	362751	362850	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-6699	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
169398	chr3	160564501	160566150	+	0	NA	5' UTR (NM_002268, exon 1 of 17)	5' UTR (NM_002268, exon 1 of 17)	246	NM_002268	3840		NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
98937	chr17	48628371	48628530	+	0	NA	Intergenic	Intergenic	-2092	NM_024017	3219		NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
120293	chr19	43463061	43464650	+	0	NA	intron (NM_014400, intron 2 of 4)	CpG-14618	1753	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
176139	chr4	83125051	83125150	+	0	NA	Intergenic	AluSc|SINE|Alu	-10371	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
239051	chrY	7277551	7277850	+	0	NA	intron (NR_028062, intron 1 of 7)	AluJr|SINE|Alu	3728	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
161404	chr3	41221101	41221680	+	0	NA	intron (NM_001098210, intron 1 of 15)	AluJr4|SINE|Alu	21885	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
195472	chr6	37053251	37053550	+	0	NA	Intergenic	AluY|SINE|Alu	47745	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
106582	chr18	22165401	22166550	+	0	NA	TTS (NR_102763)	TTS (NR_102763)	2993	NR_102763	100128893		NR_102763	ENSG00000266010	GATA6-AS1	BM742401|locus5689	GATA6 antisense RNA 1 (head to head)	ncRNA
136228	chr2	174593251	174594190	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	4084	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
229166	chr9	114504151	114507000	+	0	NA	promoter-TSS (NM_001173425)	promoter-TSS (NM_001173425)	-102	NM_015404	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
114544	chr19	12870071	12871180	+	0	NA	intron (NM_014975, intron 22 of 25)	AluSz|SINE|Alu	10824	NM_001375	1777		NM_001375	ENSG00000105612	DNASE2	AIPCS|DNASE2A|DNL|DNL2	deoxyribonuclease 2, lysosomal	protein-coding
64519	chr14	24422301	24422830	+	0	NA	Intergenic	L2b|LINE|L2	-6721	NM_001290256	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
190538	chr5	180683271	180683430	+	0	NA	promoter-TSS (NR_146728)	promoter-TSS (NR_146728)	-746	NR_146728	105377765		NR_146728		LINC02222	-	long intergenic non-protein coding RNA 2222	ncRNA
17532	chr1	156777771	156778630	+	0	NA	intron (NM_005973, intron 1 of 6)	L1MA7|LINE|L1	10665	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
200459	chr6	135115621	135115980	+	0	NA	Intergenic	Intergenic	-60978	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
130457	chr2	85470821	85471230	+	0	NA	Intergenic	Intergenic	52094	NM_201594								
129660	chr2	70247921	70249580	+	0	NA	promoter-TSS (NR_147229)	promoter-TSS (NR_147229)	43	NM_001351513	7072		NM_022037	ENSG00000116001	TIA1	ALS26|TIA-1|WDM	TIA1 cytotoxic granule associated RNA binding protein	protein-coding
48581	chr12	10302451	10303050	+	0	NA	intron (NM_001351060, intron 2 of 8)	LTR8B|LTR|ERV1	-1696	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
68178	chr14	76132851	76133250	+	0	NA	Intergenic	Intergenic	-18835	NM_001322029	55668		NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G-patch domain containing 2 like	protein-coding
233668	chrX	1074551	1074850	+	0	NA	Intergenic	L1MB5|LINE|L1	137949	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
88284	chr16	83950301	83950730	+	0	NA	Intergenic	(ACAC)n|Simple_repeat|Simple_repeat	-2725	NM_182981	29948		NM_013370	ENSG00000140961	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
7620	chr1	35537621	35540350	+	0	NA	intron (NM_024874, intron 2 of 20)	intron (NM_024874, intron 2 of 20)	18418	NM_024874	79932		NM_024874	ENSG00000142687	KIAA0319L	AAVR|AAVRL	KIAA0319 like	protein-coding
33582	chr10	119499071	119499630	+	0	NA	TTS (NM_001005339)	TTS (NM_001005339)	37183	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
98455	chr17	47068771	47069330	+	0	NA	Intergenic	Intergenic	-89797	NM_203400	388394		NM_203400	ENSG00000179673	RPRML	-	reprimo like	protein-coding
238747	chrX	154334001	154334550	+	0	NA	Intergenic	L1MEd|LINE|L1	29105	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
108749	chr18	77112801	77113100	+	0	NA	intron (NM_001025100, intron 1 of 3)	AluSq2|SINE|Alu	19833	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
126564	chr2	28627751	28628280	+	0	NA	intron (NM_153021, intron 51 of 57)	L2c|LINE|L2	61658	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
210345	chr7	99550451	99550550	+	0	NA	intron (NM_145111, intron 1 of 1)	intron (NM_145111, intron 1 of 1)	1614	NM_145111	221786		NM_145111	ENSG00000221909	FAM200A	C7orf38	family with sequence similarity 200 member A	protein-coding
195565	chr6	37493571	37494230	+	0	NA	intron (NM_138493, intron 1 of 3)	intron (NM_138493, intron 1 of 3)	5993	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
4307	chr1	20216621	20217100	+	0	NA	Intergenic	Intergenic	-26235	NR_147205	105376827		NR_147205	ENSG00000228105	LINC01757	-	long intergenic non-protein coding RNA 1757	ncRNA
157984	chr22	49837701	49837900	+	0	NA	Intergenic	L1MB8|LINE|L1	-9927	NM_001304808	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
11001	chr1	84619521	84619880	+	0	NA	intron (NR_125761, intron 1 of 2)	intron (NR_125761, intron 1 of 2)	1331	NR_125761	103695366		NR_125761		LINC01461	TCONS_00001552	long intergenic non-protein coding RNA 1461	ncRNA
163076	chr3	50080351	50080650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8419	NR_036627	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
15009	chr1	148157771	148158130	+	0	NA	Intergenic	CpG	-4760	NR_135559	100505824		NR_135559	ENSG00000232265	LINC02805	-	long intergenic non-protein coding RNA 2805	ncRNA
210870	chr7	101140671	101141030	+	0	NA	Intergenic	AluJb|SINE|Alu	-13626	NM_001283	1174		NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A	adaptor related protein complex 1 subunit sigma 1	protein-coding
33318	chr10	114936921	114937180	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-1145	NM_139169	142940		NM_139169	ENSG00000165832	TRUB1	PUS4	TruB pseudouridine synthase family member 1	protein-coding
179495	chr4	184640971	184641380	+	0	NA	intron (NM_032991, intron 1 of 6)	intron (NM_032991, intron 1 of 6)	8272	NM_004346	836		NM_004346	ENSG00000164305	CASP3	CPP32|CPP32B|SCA-1	caspase 3	protein-coding
216202	chr8	11865321	11865780	+	0	NA	intron (NM_001384727, intron 1 of 10)	AluSg|SINE|Alu	2537	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
181477	chr5	42804351	42804450	+	0	NA	intron (NM_001093726, intron 5 of 5)	AluY|SINE|Alu	7492	NM_005410	6414		NM_005410	ENSG00000250722	SELENOP	SELP|SEPP|SEPP1|SeP	selenoprotein P	protein-coding
75707	chr15	68058871	68059830	+	0	NA	intron (NM_001320687, intron 2 of 14)	intron (NM_001320687, intron 2 of 14)	4774	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
93647	chr17	19184651	19184750	+	0	NA	Intergenic	AluSx|SINE|Alu	-3316	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
8782	chr1	42818971	42819130	+	0	NA	intron (NM_001017922, intron 1 of 11)	intron (NM_001017922, intron 1 of 11)	-1653	NM_199342	374969		NM_199342	ENSG00000177868	SVBP	CCDC23|NEDAHM	small vasohibin binding protein	protein-coding
125311	chr2	10686051	10686350	+	0	NA	intron (NM_024894, intron 1 of 20)	L2a|LINE|L2	3775	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
212043	chr7	114954471	114954630	+	0	NA	intron (NM_199072, intron 3 of 4)	intron (NM_199072, intron 3 of 4)	32396	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
165785	chr3	105791401	105791680	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	76051	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
142102	chr20	2650701	2651030	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	-1767	NR_027700	10528		NM_006392	ENSG00000101361	NOP56	NOL5A|SCA36	NOP56 ribonucleoprotein	protein-coding
133190	chr2	112996071	112996230	+	0	NA	Intergenic	Intergenic	-9309	NM_014440	27179		NM_014440	ENSG00000136694	IL36A	FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6	interleukin 36 alpha	protein-coding
215712	chr8	1501751	1502190	+	0	NA	intron (NM_001346810, intron 4 of 14)	intron (NM_001346810, intron 4 of 14)	119694	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
135961	chr2	172087651	172087950	+	0	NA	intron (NM_178120, intron 2 of 2)	intron (NM_178120, intron 2 of 2)	2293	NM_178120	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
177941	chr4	137533151	137533250	+	0	NA	promoter-TSS (NM_019035)	promoter-TSS (NM_019035)	-706	NM_019035	54510		NM_019035	ENSG00000189184	PCDH18	PCDH68L	protocadherin 18	protein-coding
233696	chrX	1208021	1209280	+	0	NA	intron (NM_001012288, intron 1 of 6)	intron (NM_001012288, intron 1 of 6)	3999	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
12984	chr1	110902701	110902900	+	0	NA	Intergenic	L1M1|LINE|L1	29652	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
129948	chr2	73921121	73921600	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-5520	NR_134898	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
214529	chr7	150510921	150511700	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-3562	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
160927	chr3	36876211	36877280	+	0	NA	intron (NM_014831, intron 7 of 22)	MLT1K|LTR|ERVL-MaLR	-54245	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
15663	chr1	150921271	150921680	+	0	NA	Intergenic	AluY|SINE|Alu	-4788	NM_001366417	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
121973	chr19	48489501	48490250	+	0	NA	intron (NM_001080434, intron 15 of 15)	intron (NM_001080434, intron 15 of 15)	20506	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
142474	chr20	4171521	4172980	+	0	NA	intron (NM_175840, intron 1 of 7)	CpG	-20840	NR_033917	728228		NR_033917	ENSG00000230176	LINC01433	-	long intergenic non-protein coding RNA 1433	ncRNA
193453	chr6	30500051	30500150	+	0	NA	Intergenic	AluYh3|SINE|Alu	10591	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
53612	chr12	68121971	68122680	+	0	NA	Intergenic	L2a|LINE|L2	37415	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
54862	chr12	95543671	95544030	+	0	NA	intron (NM_001347936, intron 1 of 6)	AluY|SINE|Alu	4388	NM_001278393	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
224894	chr9	32507871	32508030	+	0	NA	intron (NM_014314, intron 1 of 17)	intron (NM_014314, intron 1 of 17)	18246	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
95323	chr17	35731021	35732850	+	0	NA	intron (NM_033315, intron 1 of 3)	CpG	296	NM_033315	91608		NM_033315	ENSG00000270885	RASL10B	RRP17|VTS58635	RAS like family 10 member B	protein-coding
131624	chr2	96964471	96964780	+	0	NA	intron (NM_001122646, intron 5 of 16)	L2a|LINE|L2	21955	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
212349	chr7	127583751	127584280	+	0	NA	intron (NM_024523, intron 1 of 1)	intron (NM_024523, intron 1 of 1)	1581	NM_024523	79571		NM_024523	ENSG00000179562	GCC1	GCC1P|GCC88	GRIP and coiled-coil domain containing 1	protein-coding
102271	chr17	75293571	75293730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4201	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
128272	chr2	54584771	54585850	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	26916	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
132758	chr2	109793951	109795300	+	0	NA	promoter-TSS (NM_001384364).2	promoter-TSS (NM_001384364).2	16	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
98306	chr17	46240871	46241030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-15583	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
208623	chr7	72969001	72970050	+	0	NA	promoter-TSS (NM_198853)	promoter-TSS (NM_198853)	-59	NM_198924	375593		NM_198924	ENSG00000178809	TRIM73	TRIM50B	tripartite motif containing 73	protein-coding
87701	chr16	74813051	74813430	+	0	NA	Intergenic	Intergenic	-38420	NM_024306	79152		NM_024306	ENSG00000103089	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
225000	chr9	33119601	33120000	+	0	NA	intron (NM_001378495, intron 3 of 5)	intron (NM_001378495, intron 3 of 5)	11108	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
28748	chr10	61990551	61990850	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	-58657	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
105554	chr17	83205401	83206250	+	0	NA	Intergenic	Intergenic	-21072	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
49025	chr12	14363351	14364000	+	0	NA	Intergenic	Intergenic	-1957	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
20315	chr1	197452901	197453100	+	0	NA	intron (NR_047564, intron 11 of 11)	L1MB1|LINE|L1	184748	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
95475	chr17	36198801	36199800	+	0	NA	Intergenic	Intergenic	-2542	NM_002983	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
174487	chr4	39937801	39938580	+	0	NA	intron (NM_001100399, intron 2 of 32)	MER57B2|LTR|ERV1	39721	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
153442	chr22	25081451	25081830	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	31052	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
77486	chr15	84582451	84582830	+	0	NA	Intergenic	Intergenic	11506	NR_038273	100506874		NR_038273		LINC00933	-	long intergenic non-protein coding RNA 933	ncRNA
76283	chr15	74131551	74131850	+	0	NA	intron (NM_001130136, intron 3 of 3)	intron (NM_001130136, intron 3 of 3)	1114	NM_020851	57611		NM_020851	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine rich repeat 2	protein-coding
1424	chr1	2582601	2582800	+	0	NA	intron (NR_121638, intron 2 of 3)	MER65A|LTR|ERV1	-3823	NR_036637	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
139732	chr2	229822101	229822650	+	0	NA	intron (NM_001348327, intron 8 of 41)	L1MEg|LINE|L1	99304	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
43206	chr11	75423901	75424800	+	0	NA	intron (NM_001039548, intron 4 of 5)	intron (NM_001039548, intron 4 of 5)	6279	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
66087	chr14	59275721	59276050	+	0	NA	intron (NM_001270520, intron 2 of 24)	intron (NM_001270520, intron 2 of 24)	12444	NM_014992	23002		NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
161172	chr3	39109551	39109650	+	0	NA	intron (NR_159496, intron 2 of 28)	intron (NR_159496, intron 2 of 28)	-1237	NM_031899	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
65158	chr14	47901601	47901800	+	0	NA	Intergenic	L1PA2|LINE|L1	-106686	NR_039996	100506433		NR_039996	ENSG00000259129	LINC00648	-	long intergenic non-protein coding RNA 648	ncRNA
195104	chr6	35610301	35610580	+	0	NA	intron (NM_001145775, intron 6 of 11)	AluY|SINE|Alu	54349	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
126105	chr2	25951051	25951630	+	0	NA	intron (NM_002254, intron 5 of 7)	L2b|LINE|L2	31157	NM_002254	3797		NM_002254	ENSG00000084731	KIF3C	-	kinesin family member 3C	protein-coding
80493	chr16	2713251	2713350	+	0	NA	intron (NM_001318395, intron 4 of 4)	AluY|SINE|Alu	6924	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
29350	chr10	69508871	69509030	+	0	NA	Intergenic	Intergenic	57483	NR_147091	23555		NM_012339	ENSG00000099282	TSPAN15	2700063A19Rik|NET-7|NET7|TM4SF15	tetraspanin 15	protein-coding
72470	chr15	32466671	32467160	+	0	NA	Intergenic	L1MB2|LINE|L1	-11281	NM_001277308	728047		NM_001277308	ENSG00000206127	GOLGA8O	-	golgin A8 family member O	protein-coding
135855	chr2	170824901	170825100	+	0	NA	intron (NM_000817, intron 3 of 16)	Charlie8|DNA|hAT-Charlie	8113	NM_000817	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
5921	chr1	26851221	26851480	+	0	NA	intron (NM_032283, intron 6 of 7)	intron (NM_032283, intron 6 of 7)	-11799	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
52281	chr12	54578551	54578850	+	0	NA	TTS (NM_006741)	TTS (NM_006741)	9959	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
226737	chr9	76004301	76004500	+	0	NA	intron (NM_006200, intron 3 of 20)	L1MC4|LINE|L1	113727	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
28302	chr10	46218371	46218530	+	0	NA	TTS (NR_103827)	TTS (NR_103827)	51158	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
86509	chr16	67092501	67092700	+	0	NA	intron (NM_001755, intron 5 of 5)	intron (NM_001755, intron 5 of 5)	-17341	NM_001320542	80262		NM_025187	ENSG00000125149	PHAF1	C16orf6|C16orf70|LIN10|MYTHO|lin-10	phagosome assembly factor 1	protein-coding
111771	chr19	4399901	4400950	+	0	NA	5' UTR (NM_003025, exon 1 of 10)	5' UTR (NM_003025, exon 1 of 10)	122	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
76076	chr15	72477621	72478130	+	0	NA	intron (NM_005744, intron 1 of 13)	AluSx1|SINE|Alu	3545	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
169366	chr3	160420821	160421200	+	0	NA	intron (NM_005496, intron 12 of 22)	AluY|SINE|Alu	16265	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
225281	chr9	34457821	34458970	+	0	NA	promoter-TSS (NM_001281428)	promoter-TSS (NM_001281428)	175	NM_001184942	203259		NM_147202	ENSG00000164970	FAM219A	C9orf25	family with sequence similarity 219 member A	protein-coding
67477	chr14	70909721	70910980	+	0	NA	intron (NM_014982, intron 1 of 35)	L2a|LINE|L2	2891	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
28971	chr10	63247451	63248380	+	0	NA	intron (NM_001322252, intron 2 of 24)	L1MA4|LINE|L1	21308	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
208724	chr7	73368001	73368200	+	0	NA	Intergenic	Intergenic	39939	NM_001135211	8468		NM_003602	ENSG00000077800	FKBP6	FKBP36|SPGF77	FKBP prolyl isomerase family member 6 (inactive)	protein-coding
233940	chrX	2500051	2501250	+	0	NA	promoter-TSS (NM_001171135)	promoter-TSS (NM_001171135)	-111	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
206048	chr7	27148421	27149280	+	0	NA	intron (NR_038831, intron 1 of 2)	intron (NR_038831, intron 1 of 2)	-1076	NM_024014	3203		NM_024014	ENSG00000106006	HOXA6	HOX1|HOX1.2|HOX1B	homeobox A6	protein-coding
229198	chr9	114694901	114695300	+	0	NA	Intergenic	Intergenic	-12908	NM_001371884	100505478		NM_001199233	ENSG00000230601	TEX48	-	testis expressed 48	protein-coding
79058	chr16	137071	137300	+	0	NA	intron (NM_001243249, intron 1 of 11)	AluSz6|SINE|Alu	1488	NM_001077350	8131		NM_012075	ENSG00000103148	NPRL3	C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11	NPR3 like, GATOR1 complex subunit	protein-coding
61859	chr13	77002521	77003250	+	0	NA	3' UTR (NM_001366624, exon 5 of 5)	3' UTR (NM_001366624, exon 5 of 5)	10804	NM_006493	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
65851	chr14	55029351	55029450	+	0	NA	intron (NM_080867, intron 1 of 1)	MamSINE1|SINE|tRNA-RTE	2164	NM_080867	122809		NM_080867	ENSG00000180008	SOCS4	SOCS7	suppressor of cytokine signaling 4	protein-coding
170642	chr3	187044021	187044500	+	0	NA	intron (NM_173216, intron 4 of 7)	intron (NM_173216, intron 4 of 7)	5542	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
202455	chr6	158060371	158060900	+	0	NA	intron (NM_003898, intron 7 of 26)	intron (NM_003898, intron 7 of 26)	43542	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
131723	chr2	98026621	98027350	+	0	NA	Intergenic	Intergenic	-31037	NM_015348	23505		NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
224671	chr9	21095971	21096830	+	0	NA	Intergenic	Intergenic	-18458	NM_002176	3456		NM_002176	ENSG00000171855	IFNB1	IFB|IFF|IFN-beta|IFNB	interferon beta 1	protein-coding
40190	chr11	62921621	62922350	+	0	NA	promoter-TSS (NM_000738)	promoter-TSS (NM_000738)	-622	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
46733	chr11	128929471	128929630	+	0	NA	Intergenic	Intergenic	8284	NM_001195194	63970		NM_022112	ENSG00000120471	TP53AIP1	P53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein-coding
99975	chr17	57599021	57599660	+	0	NA	intron (NM_170721, intron 7 of 9)	intron (NM_170721, intron 7 of 9)	9072	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
17849	chr1	159920171	159920330	+	0	NA	intron (NM_001277223, intron 2 of 4)	L3b|LINE|CR1	3484	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
150631	chr21	43392771	43393380	+	0	NA	Intergenic	CpG	-30726	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
238068	chrX	135986951	135987050	+	0	NA	intron (NM_001379110, intron 2 of 17)	MamRTE1|LINE|RTE-BovB	1565	NM_006359	10479		NM_006359	ENSG00000198689	SLC9A6	MRSA|MRXSCH|NHE6	solute carrier family 9 member A6	protein-coding
182164	chr5	56612671	56613430	+	0	NA	Intergenic	Intergenic	-6794	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
39205	chr11	57513301	57513500	+	0	NA	intron (NM_003627, intron 2 of 14)	intron (NM_003627, intron 2 of 14)	1509	NM_001198810	8501		NM_003627	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	solute carrier family 43 member 1	protein-coding
4913	chr1	23855421	23855680	+	0	NA	intron (NM_000147, intron 4 of 7)	intron (NM_000147, intron 4 of 7)	12740	NM_000147	2517		NM_000147	ENSG00000179163	FUCA1	FUCA	alpha-L-fucosidase 1	protein-coding
15565	chr1	150555471	150556530	+	0	NA	intron (NM_001288608, intron 9 of 19)	intron (NM_001288608, intron 9 of 19)	4071	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
111893	chr19	4672551	4673150	+	0	NA	Intergenic	Intergenic	-2508	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
7452	chr1	33051171	33051330	+	0	NA	Intergenic	CpG	-14339	NM_001319143	204		NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
43044	chr11	74086171	74086530	+	0	NA	intron (NM_015531, intron 20 of 30)	MER90|LTR|ERV1	-77113	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
151813	chr22	18237471	18238080	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-31866	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
214974	chr7	152030021	152030380	+	0	NA	intron (NM_001371468, intron 2 of 12)	LTR13|LTR|ERVK	4526	NM_001371461	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
40165	chr11	62885251	62885600	+	0	NA	intron (NM_001012662, intron 9 of 11)	intron (NM_001012662, intron 9 of 11)	3726	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
133327	chr2	113898651	113898750	+	0	NA	intron (NM_001277140, intron 1 of 11)	intron (NM_001277140, intron 1 of 11)	-7708	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128527	chr2	60757971	60758350	+	0	NA	intron (NM_022894, intron 1 of 21)	intron (NM_022894, intron 1 of 21)	1892	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
203329	chr6	170214971	170215330	+	0	NA	Intergenic	CpG	47419	NR_002787	154449		NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
173431	chr4	8212321	8212580	+	0	NA	intron (NM_001318480, intron 3 of 17)	intron (NM_001318480, intron 3 of 17)	13160	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
140630	chr2	233461751	233462050	+	0	NA	intron (NM_001377259, intron 22 of 27)	intron (NM_001377259, intron 22 of 27)	27998	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
216300	chr8	12605621	12605880	+	0	NA	intron (NR_047662, intron 4 of 8)	intron (NR_047662, intron 4 of 8)	59861	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
43552	chr11	82969601	82970000	+	0	NA	Intergenic	Intergenic	64474	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
164158	chr3	56773671	56774030	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	1867	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
168676	chr3	150582571	150583130	+	0	NA	intron (NM_001319043, intron 11 of 12)	intron (NM_001319043, intron 11 of 12)	-20471	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
106534	chr18	21489171	21489330	+	0	NA	intron (NM_001142966, intron 18 of 32)	intron (NM_001142966, intron 18 of 32)	111454	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
158883	chr3	9892971	9893380	+	0	NA	exon (NM_032492, exon 2 of 2)	exon (NM_032492, exon 2 of 2)	2565	NM_001363890	84522		NM_032492	ENSG00000171135	JAGN1	GL009|SCN6	jagunal homolog 1	protein-coding
15590	chr1	150583101	150583700	+	0	NA	Intergenic	AluY|SINE|Alu	-3662	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
34608	chr10	133271651	133272480	+	0	NA	intron (NM_001164490, intron 9 of 19)	intron (NM_001164490, intron 9 of 19)	4803	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
155808	chr22	39309951	39310050	+	0	NA	Intergenic	L2a|LINE|L2	3911	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
133243	chr2	113252371	113252530	+	0	NA	intron (NR_015377, intron 2 of 5)	intron (NR_015377, intron 2 of 5)	16181	NR_015377	654433		NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
188181	chr5	150487851	150487950	+	0	NA	Intergenic	Intergenic	-1908	NR_105061	102546298		NR_105061	ENSG00000254333	NDST1-AS1	-	NDST1 antisense RNA 1	ncRNA
59193	chr13	22107621	22108280	+	0	NA	Intergenic	Intergenic	-102335	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
152705	chr22	21638271	21638830	+	0	NA	Intergenic	AluY|SINE|Alu	-3752	NM_022044	23753		NM_022044	ENSG00000128228	SDF2L1	-	stromal cell derived factor 2 like 1	protein-coding
68962	chr14	91414751	91416990	+	0	NA	intron (NM_001080414, intron 2 of 29)	intron (NM_001080414, intron 2 of 29)	1950	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
221270	chr8	122794771	122795780	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	13620	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
237430	chrX	119664801	119665000	+	0	NA	intron (NM_145799, intron 2 of 10)	intron (NM_145799, intron 2 of 10)	-18052	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
64557	chr14	24627151	24628050	+	0	NA	Intergenic	Intergenic	6590	NM_004131	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
38551	chr11	45915451	45915750	+	0	NA	intron (NM_057174, intron 4 of 10)	intron (NM_057174, intron 4 of 10)	2277	NM_057174	9409		NM_004813	ENSG00000121680	PEX16	PBD8A|PBD8B	peroxisomal biogenesis factor 16	protein-coding
179162	chr4	169771051	169771230	+	0	NA	Intergenic	Intergenic	-13196	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
136835	chr2	183037171	183037330	+	0	NA	intron (NM_205842, intron 1 of 31)	intron (NM_205842, intron 1 of 31)	1207	NM_013436	10787		NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125|p125Nap1	NCK associated protein 1	protein-coding
115780	chr19	16359021	16359280	+	0	NA	intron (NR_047665, intron 22 of 22)	intron (NR_047665, intron 22 of 22)	34324	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
5679	chr1	26345371	26345530	+	0	NA	exon (NM_001039775, exon 2 of 20)	exon (NM_001039775, exon 2 of 20)	8680	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
35620	chr11	1780801	1781530	+	0	NA	Intergenic	Intergenic	-17238	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
190029	chr5	177505321	177505780	+	0	NA	intron (NM_001144876, intron 2 of 4)	intron (NM_001144876, intron 2 of 4)	4276	NM_001384137	79930		NM_024872	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
225757	chr9	37200601	37200800	+	0	NA	intron (NM_001289119, intron 2 of 8)	intron (NM_001289119, intron 2 of 8)	80102	NM_001289120	84186		NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
157932	chr22	49785051	49785500	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	39056	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
33026	chr10	110764921	110765380	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	105754	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
55297	chr12	103457501	103457700	+	0	NA	intron (NR_103526, intron 2 of 10)	intron (NR_103526, intron 2 of 10)	38368	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
209136	chr7	75092121	75093480	+	0	NA	intron (NM_001368301, intron 1 of 2)	CpG	210	NM_001003795	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
180509	chr5	14352021	14352450	+	0	NA	intron (NR_134469, intron 11 of 56)	intron (NR_134469, intron 11 of 56)	-111748	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
169854	chr3	177193021	177193280	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluSx1|SINE|Alu	3328	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
181111	chr5	37111451	37112430	+	0	NA	intron (NM_001384732, intron 51 of 52)	intron (NM_001384732, intron 51 of 52)	-137106	NR_134263	105374727		NR_134263	ENSG00000286193	CPLANE1-AS1	-	CPLANE1 antisense RNA 1	ncRNA
109630	chr19	989121	989580	+	0	NA	intron (NM_001372085, intron 4 of 11)	intron (NM_001372085, intron 4 of 11)	5005	NM_024100	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
2149	chr1	8397051	8398280	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	26167	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
83431	chr16	27268371	27269530	+	0	NA	promoter-TSS (NM_145080)	promoter-TSS (NM_145080)	-178	NM_145080	197370		NM_145080	ENSG00000169189	NSMCE1	NSE1	NSE1 homolog, SMC5-SMC6 complex component	protein-coding
60245	chr13	40576071	40577180	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	90016	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
21917	chr1	207835451	207835880	+	0	NA	Intergenic	Intergenic	-12962	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
218595	chr8	55930421	55930680	+	0	NA	intron (NM_002350, intron 1 of 12)	intron (NM_002350, intron 1 of 12)	-27695	NR_145767	109617001		NR_145767	ENSG00000199405	SNORA1B	-	small nucleolar RNA, H/ACA box 1B	snoRNA
171376	chr3	196104721	196105180	+	0	NA	Intergenic	L1MC3|LINE|L1	-22860	NM_001313966	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
190323	chr5	179617721	179618600	+	0	NA	exon (NM_001364236, exon 6 of 14)	exon (NM_001364236, exon 6 of 14)	5241	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
82496	chr16	17371501	17371700	+	0	NA	intron (NM_022166, intron 1 of 11)	LTR86A1|LTR|ERVL	99360	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
103344	chr17	78040601	78041400	+	0	NA	intron (NM_001142640, intron 3 of 21)	CpG	36763	NM_018996	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
56373	chr12	113158451	113159430	+	0	NA	TTS (NR_106956)	TTS (NR_106956)	237	NR_106956	102466222		NR_106956	ENSG00000276908	MIR7106	hsa-mir-7106	microRNA 7106	ncRNA
137414	chr2	196275151	196275250	+	0	NA	intron (NM_001348768, intron 15 of 28)	L2b|LINE|L2	15176	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
150709	chr21	43724551	43725250	+	0	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	5771	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
66630	chr14	63802501	63802980	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-50264	NM_015180	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
19718	chr1	181099421	181100030	+	0	NA	Intergenic	Intergenic	11025	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
221543	chr8	124728211	124729180	+	0	NA	promoter-TSS (NM_001282971)	promoter-TSS (NM_001282971)	-188	NM_001282974	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
139683	chr2	227321771	227321930	+	0	NA	intron (NR_102371, intron 1 of 13)	LTR12C|LTR|ERV1	3314	NR_102371	654841		NR_102371	ENSG00000236432	MFF-DT	-	MFF divergent transcript	ncRNA
220646	chr8	101080271	101081050	+	0	NA	Intergenic	CpG	28606	NR_033962	441374		NR_033962	ENSG00000248599	SLEAR	-	STAT1 regulated ILF2 complex interacting lncRNA	ncRNA
54748	chr12	93847451	93847550	+	0	NA	intron (NM_001320100, intron 2 of 2)	HAL1b|LINE|L1	96106	NR_135017	105369911		NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
86065	chr16	57594471	57594830	+	0	NA	Intergenic	L1ME3B|LINE|L1	-25088	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
229578	chr9	123340371	123340780	+	0	NA	Intergenic	Intergenic	-15622	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
190247	chr5	178624921	178625180	+	0	NA	intron (NM_020666, intron 1 of 12)	intron (NM_020666, intron 1 of 12)	2000	NM_020666	57396		NM_020666	ENSG00000113240	CLK4	-	CDC like kinase 4	protein-coding
192025	chr6	16434551	16435080	+	0	NA	intron (NM_000332, intron 7 of 8)	L2a|LINE|L2	196228	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
50071	chr12	44816621	44817100	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	58801	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
61817	chr13	75705351	75705900	+	0	NA	intron (NM_001306080, intron 1 of 30)	intron (NM_001306080, intron 1 of 30)	-54695	NM_001366633	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
120140	chr19	42213071	42213650	+	0	NA	intron (NM_001270615, intron 3 of 4)	L1MC4|LINE|L1	4317	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
56425	chr12	113333971	113334500	+	0	NA	intron (NM_024959, intron 1 of 15)	intron (NM_024959, intron 1 of 15)	874	NM_001330466	80024		NM_024959	ENSG00000089060	SLC8B1	NCKX6|NCLX|SLC24A6	solute carrier family 8 member B1	protein-coding
182505	chr5	64958801	64959030	+	0	NA	intron (NM_001297644, intron 11 of 12)	intron (NM_001297644, intron 11 of 12)	189985	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
196916	chr6	52385001	52385730	+	0	NA	intron (NM_133367, intron 1 of 1)	THE1B|LTR|ERVL-MaLR	23214	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
175159	chr4	55561951	55562250	+	0	NA	intron (NM_152401, intron 5 of 5)	intron (NM_152401, intron 5 of 5)	-15191	NM_004898	9575		NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
29451	chr10	70442471	70442830	+	0	NA	promoter-TSS (NM_018055)	promoter-TSS (NM_018055)	-969	NM_018055	4838		NM_018055	ENSG00000156574	NODAL	HTX5	nodal growth differentiation factor	protein-coding
207483	chr7	44637821	44638800	+	0	NA	intron (NM_001363523, intron 2 of 23)	intron (NM_001363523, intron 2 of 23)	31683	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
72371	chr15	31358721	31359100	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	32075	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
161592	chr3	43036751	43037350	+	0	NA	intron (NM_001129908, intron 2 of 4)	MER96|DNA|hAT-Tip100	57739	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
210463	chr7	100132301	100133180	+	0	NA	Intergenic	Intergenic	5773	NM_203397	255374		NM_203397	ENSG00000214309	MBLAC1	-	metallo-beta-lactamase domain containing 1	protein-coding
184386	chr5	98861471	98862050	+	0	NA	intron (NR_157079, intron 31 of 34)	AluSc8|SINE|Alu	-66802	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
28862	chr10	62670921	62671380	+	0	NA	Intergenic	Intergenic	-133570	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
84229	chr16	29975951	29976830	+	0	NA	intron (NM_016151, intron 1 of 15)	intron (NM_016151, intron 1 of 15)	2522	NM_001252043	9344		NM_004783	ENSG00000149930	TAOK2	MAP3K17|PSK|PSK1|PSK1-BETA|TAO1|TAO2|Tao2beta	TAO kinase 2	protein-coding
209614	chr7	77694301	77694830	+	0	NA	intron (NR_134251, intron 1 of 3)	AluSx|SINE|Alu	1700	NR_134254	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
31579	chr10	97338001	97338200	+	0	NA	Intergenic	Intergenic	-3371	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
14274	chr1	143505851	143506380	+	0	NA	Intergenic	Intergenic	-81431	NR_027356	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
136769	chr2	181438321	181438600	+	0	NA	Intergenic	Intergenic	-18432	NM_001316312	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
35571	chr11	1685851	1686650	+	0	NA	promoter-TSS (NR_026642).5	promoter-TSS (NR_026642).5	-621	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
206767	chr7	36707621	36708080	+	0	NA	intron (NM_001177506, intron 1 of 21)	(TTTTC)n|Simple_repeat|Simple_repeat	16644	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
21725	chr1	206784251	206785200	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-12231	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
86090	chr16	57639051	57640030	+	0	NA	promoter-TSS (NM_001290144)	promoter-TSS (NM_001290144)	48	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
72902	chr15	40342871	40343230	+	0	NA	Intergenic	Intergenic	-2083	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
145945	chr20	46060321	46060980	+	0	NA	TTS (NM_001348151)	TTS (NM_001348151)	29312	NM_001348148	57727		NM_020967	ENSG00000124160	NCOA5	CIA|bA465L10.6	nuclear receptor coactivator 5	protein-coding
54302	chr12	89429301	89429500	+	0	NA	intron (NM_172240, intron 10 of 11)	intron (NM_172240, intron 10 of 11)	-76899	NM_001946	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
139784	chr2	230229351	230229750	+	0	NA	intron (NM_001278451, intron 1 of 25)	AluY|SINE|Alu	3814	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
146090	chr20	47605401	47606200	+	0	NA	intron (NM_181659, intron 2 of 22)	L1MEi|LINE|L1	103913	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
81694	chr16	11231521	11231950	+	0	NA	Intergenic	Intergenic	24447	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
9392	chr1	47432401	47433200	+	0	NA	non-coding (NR_026878, exon 1 of 1)	non-coding (NR_026878, exon 1 of 1)	1841	NR_026878	84793		NM_032707	ENSG00000237424	FOXD2-AS1	-	FOXD2 adjacent opposite strand RNA 1	ncRNA
51946	chr12	53743221	53744200	+	0	NA	Intergenic	Intergenic	8125	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
238096	chrX	136585321	136585600	+	0	NA	Intergenic	Intergenic	34582	NR_030631	100126324		NR_030631	ENSG00000216060	MIR934	MIRN934|hsa-mir-934|mir-934	microRNA 934	ncRNA
54971	chr12	96307971	96308330	+	0	NA	intron (NM_002595, intron 5 of 16)	AluJr4|SINE|Alu	52652	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
61034	chr13	48199521	48199780	+	0	NA	Intergenic	LTR33|LTR|ERVL	-33556	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
133570	chr2	121528071	121528230	+	0	NA	intron (NM_001142274, intron 4 of 37)	MIRc|SINE|MIR	-2730	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
128370	chr2	55013371	55013530	+	0	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	-3178	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
141167	chr2	239266721	239267820	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-38192	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
206510	chr7	33716701	33716900	+	0	NA	Intergenic	Intergenic	-9181	NR_165282	55025		NM_017937	ENSG00000173862	FLJ20712	-	uncharacterized FLJ20712	ncRNA
220990	chr8	115563001	115563400	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	104813	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
224358	chr9	7150371	7150930	+	0	NA	intron (NR_148677, intron 19 of 21)	intron (NR_148677, intron 19 of 21)	392677	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
156091	chr22	40059901	40060100	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSx|SINE|Alu	15183	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
128845	chr2	63845321	63845780	+	0	NA	intron (NM_001377529, intron 2 of 11)	intron (NM_001377529, intron 2 of 11)	3654	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
116011	chr19	17123971	17124130	+	0	NA	intron (NM_004145, intron 2 of 39)	AluJr|SINE|Alu	31815	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
209713	chr7	86926701	86926980	+	0	NA	exon (NM_152748, exon 8 of 21)	exon (NM_152748, exon 8 of 21)	39059	NM_152748	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
214038	chr7	143325421	143325680	+	0	NA	intron (NR_046453, intron 7 of 21)	intron (NR_046453, intron 7 of 21)	9439	NM_000083	1180		NM_000083	ENSG00000188037	CLCN1	CLC1	chloride voltage-gated channel 1	protein-coding
41662	chr11	66561451	66561750	+	0	NA	exon (NM_001258371, exon 17 of 21)	exon (NM_001258371, exon 17 of 21)	7006	NM_003793	8722		NM_003793	ENSG00000174080	CTSF	CATSF|CLN13	cathepsin F	protein-coding
203023	chr6	163490521	163491330	+	0	NA	intron (NM_206854, intron 3 of 6)	L3|LINE|CR1	76207	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
98866	chr17	48511001	48511730	+	0	NA	Intergenic	AluSz|SINE|Alu	19646	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
171349	chr3	196055351	196055450	+	0	NA	intron (NM_001313966, intron 14 of 16)	intron (NM_001313966, intron 14 of 16)	26690	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
230193	chr9	127804901	127805100	+	0	NA	intron (NR_110170, intron 4 of 14)	AluSx1|SINE|Alu	1819	NM_001018078	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
87537	chr16	71907001	71907400	+	0	NA	intron (NM_001270979, intron 1 of 5)	L1MEf|LINE|L1	11669	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
106086	chr18	9134971	9135230	+	0	NA	TTS (NM_021074)	TTS (NM_021074)	1620	NR_110771	101927275		NR_110771	ENSG00000266053	NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
163465	chr3	50619271	50619780	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	2374	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
37645	chr11	22627301	22627700	+	0	NA	Intergenic	AluSx|SINE|Alu	-1677	NM_022725	2188		NM_022725	ENSG00000183161	FANCF	FAF	FA complementation group F	protein-coding
189608	chr5	175915021	175915300	+	0	NA	Intergenic	L1ME4b|LINE|L1	43582	NM_001008220	10814		NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
178224	chr4	142720101	142720500	+	0	NA	intron (NM_001385336, intron 2 of 26)	intron (NM_001385336, intron 2 of 26)	126001	NM_001385335	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
131590	chr2	96862851	96864150	+	0	NA	intron (NM_017789, intron 12 of 14)	intron (NM_017789, intron 12 of 14)	-5484	NM_016466	51239		NM_016466	ENSG00000213337	ANKRD39	-	ankyrin repeat domain 39	protein-coding
226128	chr9	63124801	63125180	+	0	NA	intron (NR_046175, intron 1 of 3)	intron (NR_046175, intron 1 of 3)	229	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
139266	chr2	219453151	219453650	+	0	NA	intron (NM_005876, intron 6 of 40)	MIRc|SINE|MIR	-7412	NM_001173476	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
161747	chr3	44532701	44533250	+	0	NA	Intergenic	Intergenic	-22218	NM_018651	55888		NM_018651	ENSG00000196345	ZKSCAN7	ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39	zinc finger with KRAB and SCAN domains 7	protein-coding
179934	chr5	766101	766400	+	0	NA	intron (NR_147095, intron 5 of 16)	intron (NR_147095, intron 5 of 16)	18479	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
235715	chrX	48903901	48906550	+	0	NA	exon (NM_001282651, exon 5 of 5)	exon (NM_001282651, exon 5 of 5)	6421	NM_005660	7355		NM_005660	ENSG00000102100	SLC35A2	CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL	solute carrier family 35 member A2	protein-coding
157164	chr22	42922851	42923150	+	0	NA	intron (NM_001184970, intron 1 of 10)	L2b|LINE|L2	24041	NM_007229	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
155977	chr22	39906171	39906680	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	5341	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
222675	chr8	141238401	141239980	+	0	NA	intron (NM_001286646, intron 2 of 8)	intron (NM_001286646, intron 2 of 8)	-10616	NM_001080431	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
20155	chr1	192608801	192609750	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-26872	NM_144766	6003		NM_002927	ENSG00000127074	RGS13	-	regulator of G protein signaling 13	protein-coding
33396	chr10	118035751	118036250	+	0	NA	intron (NM_001330167, intron 3 of 5)	intron (NM_001330167, intron 3 of 5)	-10821	NR_026939	255082		NM_178816	ENSG00000177640	CASC2	C10orf5	cancer susceptibility 2	ncRNA
196662	chr6	44379121	44379630	+	0	NA	3' UTR (NM_145026, exon 9 of 9)	3' UTR (NM_145026, exon 9 of 9)	-8331	NM_001253	988		NM_001253	ENSG00000096401	CDC5L	CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1	cell division cycle 5 like	protein-coding
189958	chr5	177425271	177427600	+	0	NA	promoter-TSS (NM_002082)	promoter-TSS (NM_002082)	-241	NM_001004106	2870		NM_002082	ENSG00000198055	GRK6	GPRK6	G protein-coupled receptor kinase 6	protein-coding
18985	chr1	169217671	169218000	+	0	NA	intron (NR_104229, intron 10 of 12)	intron (NR_104229, intron 10 of 12)	111145	NM_001677	481		NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
23562	chr1	229380221	229380300	+	0	NA	Intergenic	Intergenic	-37213	NM_145257	126731		NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
117638	chr19	23685101	23685500	+	0	NA	intron (NM_138330, intron 1 of 3)	intron (NM_138330, intron 1 of 3)	1912	NM_138330	171392		NM_138330	ENSG00000197372	ZNF675	TBZF|TIZ	zinc finger protein 675	protein-coding
173368	chr4	7867001	7867900	+	0	NA	intron (NM_001371091, intron 4 of 17)	intron (NM_001371091, intron 4 of 17)	4858	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
115852	chr19	16536671	16536830	+	0	NA	intron (NM_006387, intron 2 of 16)	AluSx1|SINE|Alu	5687	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
65318	chr14	50104171	50104330	+	0	NA	intron (NR_131171, intron 1 of 8)	intron (NR_131171, intron 1 of 8)	793	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
17413	chr1	156647251	156647350	+	0	NA	intron (NM_198427, intron 3 of 7)	intron (NM_198427, intron 3 of 7)	5183	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
16216	chr1	153895951	153896250	+	0	NA	intron (NM_020699, intron 1 of 10)	AluJo|SINE|Alu	26872	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
29110	chr10	68338071	68338780	+	0	NA	intron (NM_021644, intron 3 of 9)	intron (NM_021644, intron 3 of 9)	-5497	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
168649	chr3	150386121	150386780	+	0	NA	Intergenic	AluSg|SINE|Alu	-21848	NM_014779	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
105418	chr17	82859321	82859800	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-19538	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
5088	chr1	24727471	24727830	+	0	NA	Intergenic	Intergenic	-17797	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
58797	chr12	132771301	132771900	+	0	NA	3' UTR (NM_005895, exon 24 of 24)	3' UTR (NM_005895, exon 24 of 24)	-9768	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
182932	chr5	70779751	70779850	+	0	NA	promoter-TSS (NR_157804).4	promoter-TSS (NR_157804).4	-714	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
107395	chr18	46096301	46097090	+	0	NA	intron (NM_004046, intron 1 of 11)	(AAC)n|Simple_repeat|Simple_repeat	1601	NM_004046	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
119735	chr19	41263601	41266000	+	0	NA	promoter-TSS (NM_001321211)	promoter-TSS (NM_001321211)	-281	NM_001321211	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
45872	chr11	119709521	119709780	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	19550	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
163572	chr3	51941401	51943650	+	0	NA	promoter-TSS (NM_004704)	promoter-TSS (NM_004704)	162	NM_001370240	10039		NM_005485	ENSG00000041880	PARP3	ADPRT3|ADPRTL2|ADPRTL3|ARTD3|IRT1|PADPRT-3	poly(ADP-ribose) polymerase family member 3	protein-coding
144700	chr20	36467501	36468300	+	0	NA	intron (NM_183006, intron 1 of 6)	MIRb|SINE|MIR	6105	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
238404	chrX	150548521	150548950	+	0	NA	Intergenic	L2c|LINE|L2	-19886	NM_001376906	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
219107	chr8	65943571	65943930	+	0	NA	Intergenic	Intergenic	-71228	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
154701	chr22	36404071	36404230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-16183	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
105685	chr18	2660551	2660650	+	0	NA	intron (NM_015295, intron 1 of 47)	AluSq2|SINE|Alu	4874	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
8123	chr1	39230471	39231430	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	146783	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
232818	chr9	136722471	136722650	+	0	NA	intron (NM_152421, intron 4 of 4)	intron (NM_152421, intron 4 of 4)	3677	NR_002975	677824		NR_002975	ENSG00000280496	SNORA17B	ACA43|SNORA43	small nucleolar RNA, H/ACA box 17B	snoRNA
101403	chr17	67380871	67382450	+	0	NA	intron (NM_181671, intron 1 of 9)	AluY|SINE|Alu	4379	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
14754	chr1	146011371	146011730	+	0	NA	Intergenic	AluJo|SINE|Alu	10185	NM_213652	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
23291	chr1	228060751	228061150	+	0	NA	3' UTR (NM_033131, exon 4 of 4)	3' UTR (NM_033131, exon 4 of 4)	15600	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
130943	chr2	87506801	87507000	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	36950	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
53919	chr12	71665671	71665830	+	0	NA	intron (NM_031435, intron 1 of 2)	L2b|LINE|L2	1449	NM_031435	83591		NM_031435	ENSG00000173451	THAP2	-	THAP domain containing 2	protein-coding
97764	chr17	44492251	44492550	+	0	NA	intron (NM_001304940, intron 1 of 9)	AluY|SINE|Alu	11006	NM_001002909	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
93566	chr17	19091351	19091650	+	0	NA	intron (NR_164158, intron 1 of 3)	intron (NR_164158, intron 1 of 3)	2039	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
229986	chr9	126819401	126819600	+	0	NA	intron (NM_014007, intron 2 of 2)	Tigger1|DNA|TcMar-Tigger	14460	NM_014007	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
198740	chr6	108556271	108556750	+	0	NA	Intergenic	AluJb|SINE|Alu	-3315	NM_201559	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
187705	chr5	143378071	143378450	+	0	NA	intron (NR_157096, intron 1 of 7)	AluJr|SINE|Alu	25023	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
65582	chr14	52012521	52013380	+	0	NA	intron (NM_007361, intron 16 of 21)	intron (NM_007361, intron 16 of 21)	23404	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
176425	chr4	89260451	89260550	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	47300	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
49800	chr12	31962871	31963850	+	0	NA	intron (NM_018169, intron 2 of 5)	intron (NM_018169, intron 2 of 5)	3945	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
238172	chrX	136867471	136868030	+	0	NA	Intergenic	L1M5|LINE|L1	11521	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
173396	chr4	7975021	7975280	+	0	NA	intron (NM_001286688, intron 14 of 14)	AluJb|SINE|Alu	30231	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
184501	chr5	100884401	100884750	+	0	NA	TTS (NM_175052)	TTS (NM_175052)	18707	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
22236	chr1	212605301	212606030	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	-3096	NM_001674	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
141239	chr2	239642571	239642950	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-120100	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
157505	chr22	45332301	45332700	+	0	NA	exon (NM_001349913, exon 6 of 9)	exon (NM_001349913, exon 6 of 9)	14057	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
49461	chr12	25058021	25058850	+	0	NA	intron (NM_001204126, intron 1 of 19)	L1ME2|LINE|L1	5729	NM_006152	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
223290	chr8	143742371	143742930	+	0	NA	intron (NM_001381874, intron 3 of 13)	intron (NM_001381874, intron 3 of 13)	8511	NM_001381874	642574		NM_001381874	ENSG00000203499	IQANK1	CACClnc|FAM83H-AS1|FAM83HAS1|onco-lncRNA-3	IQ motif and ankyrin repeat containing 1	protein-coding
57705	chr12	122861451	122861950	+	0	NA	intron (NM_003959, intron 31 of 31)	intron (NM_003959, intron 31 of 31)	26243	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
44404	chr11	103326051	103326630	+	0	NA	intron (NM_001377, intron 82 of 88)	L1P4a|LINE|L1	216914	NM_001080463	79659		NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding
194021	chr6	31821101	31823500	+	0	NA	Intergenic	Intergenic	-5438	NM_005346	3304		NM_005346	ENSG00000204388	HSPA1B	HSP70-1|HSP70-1B|HSP70-2|HSP70.1|HSP70.2|HSP72|HSPA1|HSX70	heat shock protein family A (Hsp70) member 1B	protein-coding
26540	chr10	21524851	21524950	+	0	NA	intron (NM_207371, intron 1 of 3)	intron (NM_207371, intron 1 of 3)	782	NM_207371	387640		NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
48852	chr12	12384701	12386030	+	0	NA	intron (NM_058169, intron 2 of 3)	L1ME1|LINE|L1	28287	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
91656	chr17	5512721	5513000	+	0	NA	intron (NM_001033053, intron 15 of 15)	MER41B|LTR|ERV1	-11854	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
74966	chr15	63828571	63828730	+	0	NA	intron (NM_003922, intron 1 of 77)	L1MC4a|LINE|L1	5298	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
119869	chr19	41447521	41447780	+	0	NA	Intergenic	AluSp|SINE|Alu	4494	NM_001130514	100170765		NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
104842	chr17	81835871	81836480	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1125	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
8316	chr1	40084771	40085230	+	0	NA	intron (NM_001363695, intron 5 of 7)	LTR13|LTR|ERVK	12252	NM_000310	5538		NM_000310	ENSG00000131238	PPT1	CLN1|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding
116884	chr19	18672701	18672900	+	0	NA	Intergenic	Intergenic	-10880	NM_015321	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
127071	chr2	37459121	37459780	+	0	NA	Intergenic	Intergenic	114820	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
50803	chr12	49064951	49065050	+	0	NA	non-coding (NR_130123, exon 7 of 7)	non-coding (NR_130123, exon 7 of 7)	-4206	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
52366	chr12	55655351	55655730	+	0	NA	Intergenic	AluY|SINE|Alu	18648	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
75531	chr15	66619121	66619380	+	0	NA	intron (NR_110372, intron 1 of 4)	intron (NR_110372, intron 1 of 4)	37060	NR_110372	102723165		NR_110372	ENSG00000259471	LINC01169	-	long intergenic non-protein coding RNA 1169	ncRNA
71539	chr14	106218201	106218430	+	0	NA	Intergenic	Intergenic	-69359	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
179078	chr4	167233801	167234000	+	0	NA	intron (NM_001204352, intron 2 of 11)	intron (NM_001204352, intron 2 of 11)	526	NM_001204353	50859		NM_016950	ENSG00000196104	SPOCK3	HSAJ1454|TES-3|TICN3	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	protein-coding
166328	chr3	112847551	112848480	+	0	NA	Intergenic	HERVL74-int|LTR|ERVL	-1159	NM_001370552	344807		NM_001008784	ENSG00000206531	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1 like	protein-coding
135181	chr2	158007321	158007600	+	0	NA	intron (NM_001135098, intron 1 of 8)	intron (NM_001135098, intron 1 of 8)	12281	NM_001135098	151531		NM_173355	ENSG00000007001	UPP2	UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
32331	chr10	102233021	102233450	+	0	NA	intron (NM_005029, intron 1 of 3)	intron (NM_005029, intron 1 of 3)	6936	NM_152310	83401		NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
33851	chr10	124235721	124236000	+	0	NA	Intergenic	Intergenic	-142262	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
193947	chr6	31665501	31666780	+	0	NA	promoter-TSS (NM_001320)	promoter-TSS (NM_001320)	60	NM_001320	1460		NM_001320	ENSG00000204435	CSNK2B	CK2B|CK2N|CSK2B|Ckb1|Ckb2|G5A|POBINDS	casein kinase 2 beta	protein-coding
171043	chr3	195238621	195238880	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	9170	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
92232	chr17	7906371	7906530	+	0	NA	TTS (NR_003000)	TTS (NR_003000)	327	NR_003000	677763		NR_003000	ENSG00000252835	SCARNA21	ACA68|SCARNA21A	small Cajal body-specific RNA 21	ncRNA
139298	chr2	219519901	219520530	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	5733	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
92454	chr17	8475771	8476080	+	0	NA	exon (NM_001256012, exon 43 of 43)	exon (NM_001256012, exon 43 of 43)	40041	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
113873	chr19	10664551	10665650	+	0	NA	intron (NM_153464, intron 1 of 17)	AluSx|SINE|Alu	10754	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
220679	chr8	101202971	101203330	+	0	NA	intron (NM_001042510, intron 1 of 4)	intron (NM_001042510, intron 1 of 4)	2523	NM_016096	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
21652	chr1	206682951	206684080	+	0	NA	Intergenic	Intergenic	-1390	NM_032960	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
236205	chrX	65682571	65682800	+	0	NA	intron (NM_002444, intron 1 of 12)	L2b|LINE|L2	15031	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
86320	chr16	64662471	64662730	+	0	NA	Intergenic	Intergenic	459463	NM_001308392	1009		NM_001797	ENSG00000140937	CDH11	CAD11|CDHOB|ESWS|OB|OSF-4|TBHS2	cadherin 11	protein-coding
133821	chr2	127855951	127856500	+	0	NA	intron (NM_004805, intron 1 of 3)	AluJb|SINE|Alu	1930	NM_004805	5433		NM_004805	ENSG00000144231	POLR2D	HSRBP4|HSRPB4|RBP4|RPB16|RPB4	RNA polymerase II subunit D	protein-coding
165553	chr3	101424201	101425100	+	0	NA	intron (NM_001077203, intron 4 of 22)	L1PA13|LINE|L1	88562	NM_001282802	57337		NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
154639	chr22	36326971	36327130	+	0	NA	intron (NM_002473, intron 4 of 40)	intron (NM_002473, intron 4 of 40)	-40143	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
70066	chr14	100144121	100144380	+	0	NA	TTS (NM_001330221)	TTS (NM_001330221)	15395	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
147889	chr20	62875151	62875780	+	0	NA	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	7438	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
71768	chr15	21260871	21261030	+	0	NA	Intergenic	Intergenic	36879	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
230342	chr9	128018271	128018630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-37461	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
82285	chr16	15523151	15523450	+	0	NA	intron (NM_001142469, intron 2 of 5).2	LTR1A2|LTR|ERV1	21034	NM_001142469	89927		NM_033201	ENSG00000166780	BMERB1	C16orf45|MINP	bMERB domain containing 1	protein-coding
114926	chr19	13962871	13963030	+	0	NA	intron (NM_002918, intron 20 of 20)	CpG	-9558	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
33158	chr10	112530971	112531550	+	0	NA	intron (NM_001365710, intron 4 of 7)	intron (NM_001365710, intron 4 of 7)	-83657	NM_001351082	64429		NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|DHHC6|ZNF376	zinc finger DHHC-type palmitoyltransferase 6	protein-coding
95891	chr17	38885121	38885380	+	0	NA	intron (NM_001271608, intron 2 of 5)	MIRb|SINE|MIR	15192	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
61618	chr13	73708401	73708790	+	0	NA	intron (NM_007249, intron 7 of 7)	intron (NM_007249, intron 7 of 7)	144351	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
91899	chr17	7292771	7293230	+	0	NA	intron (NM_015982, intron 2 of 8)	intron (NM_015982, intron 2 of 8)	1639	NM_015982	51087		NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y-box binding protein 2	protein-coding
95405	chr17	36065001	36065200	+	0	NA	intron (NM_002988, intron 1 of 2).3	intron (NM_002988, intron 1 of 2).3	828	NM_002988	6362		NM_002988	ENSG00000275385	CCL18	AMAC-1|AMAC1|CKb7|DC-CK1|DCCK1|MIP-4|PARC|SCYA18	C-C motif chemokine ligand 18	protein-coding
225700	chr9	36575271	36575900	+	0	NA	intron (NM_001256693, intron 1 of 15)	GA-rich|Low_complexity|Low_complexity	2690	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
87771	chr16	75318051	75318150	+	0	NA	intron (NM_006324, intron 5 of 6)	AluSx|SINE|Alu	-50093	NM_001170715	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
149173	chr21	17924951	17925300	+	0	NA	intron (NM_001204177, intron 1 of 4)	intron (NM_001204177, intron 1 of 4)	7785	NM_001204175	140578		NM_024944	ENSG00000154645	CHODL	C21orf68|MT75|PRED12	chondrolectin	protein-coding
98376	chr17	46424321	46424580	+	0	NA	Intergenic	Intergenic	51637	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
132058	chr2	101204721	101204980	+	0	NA	Intergenic	L1ME4b|LINE|L1	-48036	NM_017546	55571		NM_017546	ENSG00000158435	CNOT11	C2orf29|C40	CCR4-NOT transcription complex subunit 11	protein-coding
123456	chr19	54149521	54149780	+	0	NA	exon (NM_014516, exon 13 of 18).8	exon (NM_014516, exon 13 of 18).8	10071	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
237840	chrX	130090301	130090800	+	0	NA	intron (NM_001127197, intron 1 of 8)	L2b|LINE|L2	19947	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
191976	chr6	16154671	16155230	+	0	NA	Intergenic	Intergenic	13394	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
141148	chr2	239236921	239237180	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-41593	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
237375	chrX	119266351	119266650	+	0	NA	Intergenic	Intergenic	-25029	NR_110396	101928336		NR_110396	ENSG00000230392	LINC03098	-	long intergenic non-protein coding RNA 3098	ncRNA
136445	chr2	176827301	176827500	+	0	NA	Intergenic	Intergenic	189646	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
78757	chr15	99076321	99076980	+	0	NA	Intergenic	Intergenic	-28430	NM_015286	23336		NM_015286	ENSG00000182253	SYNM	DMN|SYN	synemin	protein-coding
109937	chr19	1319671	1320030	+	0	NA	Intergenic	AluSx1|SINE|Alu	33977	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
57133	chr12	121221821	121222350	+	0	NA	intron (NR_046373, intron 2 of 10)	intron (NR_046373, intron 2 of 10)	11956	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
95198	chr17	35224871	35225030	+	0	NA	Intergenic	L1MC5a|LINE|L1	-18122	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
238229	chrX	140744101	140744500	+	0	NA	intron (NR_104228, intron 3 of 3)	intron (NR_104228, intron 3 of 3)	34541	NR_104228	286411		NR_028344	ENSG00000203930	LINC00632	ARST|ASINC|BMOR|CDR1-AS|CDR1NAT|CDR1as|MDHDH|ciRS-7	long intergenic non-protein coding RNA 632	ncRNA
108227	chr18	63195101	63195700	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	124369	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
108343	chr18	67243871	67244530	+	0	NA	Intergenic	Intergenic	162616	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
18059	chr1	160633671	160634580	+	0	NA	intron (NR_104401, intron 3 of 5)	intron (NR_104401, intron 3 of 5)	12919	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
231344	chr9	130244701	130244900	+	0	NA	Intergenic	Intergenic	3413	NR_162140	113219459		NR_162140		MIR12126	-	microRNA 12126	ncRNA
152936	chr22	22817171	22817330	+	0	NA	Intergenic	Intergenic	-5526	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
36694	chr11	8693051	8693350	+	0	NA	TTS (NM_001376505)	TTS (NM_001376505)	7761	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
195235	chr6	36245601	36245880	+	0	NA	intron (NM_173676, intron 1 of 7)	MIRc|SINE|MIR	2572	NM_173676	285848		NM_173676	ENSG00000180316	PNPLA1	ARCI10|dJ50J22.1	patatin like phospholipase domain containing 1	protein-coding
215012	chr7	152385971	152386130	+	0	NA	intron (NM_170606, intron 1 of 58)	AluSx|SINE|Alu	49953	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
126234	chr2	27054251	27054550	+	0	NA	intron (NM_001035507, intron 4 of 10)	intron (NM_001035507, intron 4 of 10)	2732	NM_021831	60509		NM_021831	ENSG00000084693	AGBL5	CCP5|RP75	AGBL carboxypeptidase 5	protein-coding
74282	chr15	57688321	57688780	+	0	NA	intron (NR_104371, intron 12 of 16)	(TA)n|Simple_repeat|Simple_repeat	-17971	NM_001018102	81488		NM_015532	ENSG00000255529	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	RNA polymerase II subunit M	protein-coding
112629	chr19	6773301	6774350	+	0	NA	intron (NM_005428, intron 1 of 26)	intron (NM_005428, intron 1 of 26)	1117	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
63429	chr13	114098851	114098950	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-20945	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
72861	chr15	40271401	40271930	+	0	NA	intron (NM_001128628, intron 5 of 10)	intron (NM_001128628, intron 5 of 10)	10921	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
131023	chr2	88052171	88052600	+	0	NA	intron (NM_001304526, intron 1 of 3)	Ricksha_0|DNA|MULE-MuDR	3398	NM_016618	51315		NM_016618	ENSG00000172086	KRCC1	CHBP2	lysine rich coiled-coil 1	protein-coding
216357	chr8	17496751	17497100	+	0	NA	promoter-TSS (NM_001370337)	promoter-TSS (NM_001370337)	-163	NM_001370338	6542		NM_003046	ENSG00000003989	SLC7A2	ATRC2|CAT-2A|CAT-2B|CAT2|HCAT2|SLC7A2A|SLC7A2B	solute carrier family 7 member 2	protein-coding
189870	chr5	177302901	177305430	+	0	NA	promoter-TSS (NM_001031677)	promoter-TSS (NM_001031677)	366	NM_001271828	27166		NM_013237	ENSG00000169230	PRELID1	CGI-106|PRELI|PX19|SBBI12	PRELI domain containing 1	protein-coding
100173	chr17	58629251	58630330	+	0	NA	intron (NM_198393, intron 3 of 32)	AluY|SINE|Alu	62255	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
206748	chr7	36677371	36678200	+	0	NA	intron (NM_001177507, intron 1 of 19)	L1MB7|LINE|L1	46709	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
189345	chr5	172184451	172185470	+	0	NA	intron (NM_005990, intron 1 of 18)	AluSz|SINE|Alu	3264	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
87948	chr16	79594471	79594630	+	0	NA	exon (NM_005360, exon 2 of 2)	exon (NM_005360, exon 2 of 2)	6187	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
208024	chr7	55597821	55598180	+	0	NA	Intergenic	L1PA16|LINE|L1	-25498	NM_001321244	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
28901	chr10	63083721	63084180	+	0	NA	Intergenic	Intergenic	-49297	NM_001282405	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
67407	chr14	69802071	69802230	+	0	NA	Intergenic	AluJo|SINE|Alu	-4909	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
31090	chr10	89248771	89249200	+	0	NA	intron (NM_000235, intron 1 of 9)	intron (NM_000235, intron 1 of 9)	2790	NM_000235	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
201570	chr6	149323651	149324050	+	0	NA	intron (NM_015093, intron 1 of 8)	intron (NM_015093, intron 1 of 8)	5550	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
76006	chr15	70990251	70990350	+	0	NA	intron (NM_001284357, intron 12 of 16)	L1PA3|LINE|L1	97474	NM_017691	54839		NM_017691	ENSG00000137821	LRRC49	CSTPP2|PGs4	leucine rich repeat containing 49	protein-coding
207158	chr7	43590771	43591150	+	0	NA	intron (NM_004760, intron 1 of 6)	intron (NM_004760, intron 1 of 6)	7852	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
28372	chr10	47260851	47261550	+	0	NA	Intergenic	MER73|LTR|ERVL	-38997	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
86579	chr16	67235151	67235250	+	0	NA	intron (NM_013241, intron 11 of 21)	intron (NM_013241, intron 11 of 21)	8070	NM_014187	29100		NM_014187	ENSG00000168701	TMEM208	HSPC171|SND2|hSND2	transmembrane protein 208	protein-coding
111071	chr19	3162351	3162700	+	0	NA	intron (NM_002068, intron 6 of 6)	MLT1B|LTR|ERVL-MaLR	-7350	NR_110670	100996351		NR_110670	ENSG00000267551	GNA15-DT	-	GNA15 divergent transcript	ncRNA
143169	chr20	24135571	24136130	+	0	NA	Intergenic	Intergenic	-63917	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
43083	chr11	74748101	74751330	+	0	NA	intron (NM_001098638, intron 1 of 5)	intron (NM_001098638, intron 1 of 5)	866	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
226037	chr9	42851171	42851350	+	0	NA	Intergenic	CpG	62860	NR_131213	105500239		NR_131213		XLOC_007697	-	uncharacterized LOC105500239	ncRNA
16524	chr1	154938871	154939450	+	0	NA	intron (NM_001323012, intron 1 of 4)	L2|LINE|L2	-2441	NM_001323011	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
178409	chr4	147707971	147708730	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-23738	NM_024605	79658		NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
140937	chr2	237735721	237735980	+	0	NA	intron (NM_001137550, intron 10 of 23)	intron (NM_001137550, intron 10 of 23)	43645	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
72400	chr15	31391301	31394130	+	0	NA	intron (NM_001302461, intron 1 of 1).3	CpG	65880	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
190268	chr5	179277771	179278600	+	0	NA	intron (NM_014244, intron 2 of 21)	intron (NM_014244, intron 2 of 21)	67276	NM_014244	9509		NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	ADAM metallopeptidase with thrombospondin type 1 motif 2	protein-coding
96740	chr17	41685521	41685780	+	0	NA	Intergenic	MER11C|LTR|ERVK	-3235	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
115919	chr19	16615071	16615430	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	12954	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
24189	chr1	235938801	235939000	+	0	NA	Intergenic	Intergenic	-55187	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
155999	chr22	39928651	39929780	+	0	NA	intron (NM_001291828, intron 1 of 4)	L1MC4a|LINE|L1	2611	NM_001291828	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
56863	chr12	120265101	120266680	+	0	NA	promoter-TSS (NM_001243756)	promoter-TSS (NM_001243756)	-119	NM_001243756	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
72168	chr15	29120551	29120650	+	0	NA	3' UTR (NM_015307, exon 11 of 11)	3' UTR (NM_015307, exon 11 of 11)	49942	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
6872	chr1	31239071	31239930	+	0	NA	exon (NM_024522, exon 1 of 7)	exon (NM_024522, exon 1 of 7)	387	NM_024522	79570		NM_024522	ENSG00000084628	NKAIN1	FAM77C	sodium/potassium transporting ATPase interacting 1	protein-coding
29047	chr10	67783651	67783950	+	0	NA	Intergenic	L2c|LINE|L2	54379	NM_201262	56521		NM_021800	ENSG00000108176	DNAJC12	HPANBH4|JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
173841	chr4	21135051	21135150	+	0	NA	intron (NM_147182, intron 2 of 8)	intron (NM_147182, intron 2 of 8)	-151091	NM_001363504	80333		NM_025221	ENSG00000185774	KCNIP4	CALP|KCHIP4	potassium voltage-gated channel interacting protein 4	protein-coding
4719	chr1	23248521	23248780	+	0	NA	Intergenic	Intergenic	-31148	NM_000864	3352		NM_000864	ENSG00000179546	HTR1D	5-HT1D|HT1DA|HTR1DA|HTRL|RDC4	5-hydroxytryptamine receptor 1D	protein-coding
43276	chr11	75777421	75777680	+	0	NA	intron (NM_001253891, intron 1 of 6)	MIRc|SINE|MIR	8772	NM_032564	84649		NM_032564	ENSG00000062282	DGAT2	ARAT|GS1999FULL|HMFN1045	diacylglycerol O-acyltransferase 2	protein-coding
139032	chr2	218430001	218430200	+	0	NA	intron (NM_007127, intron 9 of 19)	intron (NM_007127, intron 9 of 19)	10977	NM_007127	7429		NM_007127	ENSG00000127831	VIL1	D2S1471|VIL	villin 1	protein-coding
31065	chr10	88995271	88996130	+	0	NA	intron (NR_135314, intron 1 of 8)	AluSz|SINE|Alu	-2725	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
126380	chr2	27492921	27493450	+	0	NA	intron (NM_022823, intron 5 of 6)	AluSx1|SINE|Alu	2015	NM_022823	64838		NM_022823	ENSG00000115226	FNDC4	FRCP1	fibronectin type III domain containing 4	protein-coding
38237	chr11	36465601	36466030	+	0	NA	TTS (NM_024841)	TTS (NM_024841)	44457	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
68108	chr14	75333851	75335430	+	0	NA	Intergenic	Intergenic	40236	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
153884	chr22	30285101	30285300	+	0	NA	TTS (NM_001037666)	TTS (NM_001037666)	4305	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
218826	chr8	59118561	59120580	+	0	NA	promoter-TSS (NM_014729)	promoter-TSS (NM_014729)	360	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
201243	chr6	144013401	144013750	+	0	NA	intron (NM_001289040, intron 1 of 5)	MLT1D|LTR|ERVL-MaLR	-4845	NR_002768	57061		NR_002768	ENSG00000283122	HYMAI	NCRNA00020	hydatidiform mole associated and imprinted	ncRNA
138244	chr2	203013921	203015730	+	0	NA	promoter-TSS (NM_001114132)	promoter-TSS (NM_001114132)	-50	NM_001114132	65065		NM_198945	ENSG00000144426	NBEAL1	A530083I02Rik|ALS2CR16|ALS2CR17	neurobeachin like 1	protein-coding
64231	chr14	23077901	23078100	+	0	NA	intron (NM_014977, intron 8 of 18)	intron (NM_014977, intron 8 of 18)	-6431	NM_001164816	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
68460	chr14	85934151	85935400	+	0	NA	promoter-TSS (NR_110155)	promoter-TSS (NR_110155)	97	NR_110155	101928767		NR_110155	ENSG00000258733	LINC02328	-	long intergenic non-protein coding RNA 2328	ncRNA
209278	chr7	75921101	75921300	+	0	NA	intron (NM_001367562, intron 2 of 16)	intron (NM_001367562, intron 2 of 16)	6003	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
32639	chr10	103695021	103695600	+	0	NA	intron (NM_014631, intron 5 of 13)	AluJr|SINE|Alu	-17095	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
10946	chr1	84161971	84162330	+	0	NA	intron (NM_182948, intron 1 of 9)	L1MB8|LINE|L1	-2034	NM_001242857	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
212644	chr7	129496651	129497150	+	0	NA	Intergenic	MIR|SINE|MIR	-5631	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
131329	chr2	96137301	96138200	+	0	NA	intron (NM_001002036, intron 1 of 8)	intron (NM_001002036, intron 1 of 8)	686	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
201327	chr6	144414421	144414680	+	0	NA	intron (NM_007124, intron 2 of 73)	Tigger3b|DNA|TcMar-Tigger	8895	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
34807	chr11	278721	279620	+	0	NA	intron (NM_138329, intron 1 of 7)	CpG	600	NM_138329	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
220697	chr8	101624371	101624530	+	0	NA	intron (NM_024915, intron 9 of 15)	intron (NM_024915, intron 9 of 15)	132011	NM_001330593	79977		NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|PPCD4|TFCP2L3	grainyhead like transcription factor 2	protein-coding
27564	chr10	32353751	32354050	+	0	NA	intron (NR_104163, intron 1 of 1)	intron (NR_104163, intron 1 of 1)	6536	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
23766	chr1	232950151	232951700	+	0	NA	promoter-TSS (NR_138027)	promoter-TSS (NR_138027)	83	NR_138027	84284		NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase|THEP1	nucleoside-triphosphatase, cancer-related	protein-coding
156873	chr22	42088271	42088430	+	0	NA	intron (NM_002490, intron 1 of 2).2	AluYb8|SINE|Alu	2422	NM_002490	4700		NM_002490	ENSG00000184983	NDUFA6	B14|CI-B14|LYRM6|MC1DN33|NADHB14	NADH:ubiquinone oxidoreductase subunit A6	protein-coding
48918	chr12	12618051	12618350	+	0	NA	intron (NM_001310, intron 1 of 3)	SVA_B|Retroposon|SVA	6324	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
128435	chr2	55431921	55432250	+	0	NA	Intergenic	Intergenic	-12229	NM_001365480	55704		NM_018084	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL	coiled-coil domain containing 88A	protein-coding
190296	chr5	179594671	179595100	+	0	NA	exon (NM_025158, exon 12 of 18)	exon (NM_025158, exon 12 of 18)	8856	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
68801	chr14	91242771	91242930	+	0	NA	intron (NM_001348437, intron 1 of 2)	intron (NM_001348437, intron 1 of 2)	1854	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
166686	chr3	120357871	120358180	+	0	NA	Intergenic	Intergenic	-8671	NM_001099678	116064		NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
68495	chr14	88039401	88039950	+	0	NA	intron (NR_046094, intron 2 of 3)	intron (NR_046094, intron 2 of 3)	-13363	NR_110121	101928791		NR_110121		LINC01147	-	long intergenic non-protein coding RNA 1147	ncRNA
121638	chr19	47468901	47469330	+	0	NA	intron (NM_015063, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	2778	NM_015063	6543		NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
25352	chr10	6349771	6350130	+	0	NA	promoter-TSS (NR_148966)	promoter-TSS (NR_148966)	-366	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
54124	chr12	76502751	76502850	+	0	NA	intron (NM_001003712, intron 1 of 22)	ERVL-B4-int|LTR|ERVL	56971	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
222941	chr8	143025821	143027880	+	0	NA	Intergenic	Intergenic	8321	NM_002346	4061		NM_002346	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	lymphocyte antigen 6 family member E	protein-coding
155124	chr22	37633701	37634300	+	0	NA	TTS (NM_001363771)	TTS (NM_001363771)	-5669	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
208942	chr7	74141621	74141880	+	0	NA	Intergenic	MER41B|LTR|ERV1	-32606	NM_031992	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
164483	chr3	59996271	59996430	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	84559	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
147253	chr20	57426401	57426600	+	0	NA	Intergenic	Intergenic	-33444	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
165085	chr3	71484971	71485130	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	57039	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
212743	chr7	129914871	129915580	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	37735	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
59016	chr13	20189901	20190100	+	0	NA	intron (NM_004004, intron 1 of 1)	intron (NM_004004, intron 1 of 1)	2938	NM_004004	2706		NM_004004	ENSG00000165474	GJB2	BAPS|CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein beta 2	protein-coding
122191	chr19	48936151	48936250	+	0	NA	intron (NM_014475, intron 3 of 6)	intron (NM_014475, intron 3 of 6)	2501	NM_014475	27294		NM_014475	ENSG00000104808	DHDH	2DD|HUM2DD	dihydrodiol dehydrogenase	protein-coding
108192	chr18	63103121	63103580	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	216419	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
75777	chr15	68789221	68789480	+	0	NA	intron (NM_006305, intron 1 of 6)	L3|LINE|CR1	12575	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
176316	chr4	87465751	87466080	+	0	NA	Intergenic	Intergenic	43318	NM_198038	53343		NM_024047	ENSG00000170502	NUDT9	NUDT10	nudix hydrolase 9	protein-coding
11071	chr1	85195771	85196430	+	0	NA	intron (NM_032184, intron 1 of 6)	intron (NM_032184, intron 1 of 6)	4916	NM_032184	84144		NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
15079	chr1	148480901	148481580	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	2062	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
163776	chr3	52382971	52383130	+	0	NA	intron (NM_015512, intron 50 of 77)	intron (NM_015512, intron 50 of 77)	26958	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
55464	chr12	104679951	104681050	+	0	NA	intron (NM_018413, intron 2 of 2)	L2a|LINE|L2	88867	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
186171	chr5	134193021	134194000	+	0	NA	TTS (NM_002715)	TTS (NM_002715)	-16477	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
4300	chr1	20171421	20171750	+	0	NA	intron (NM_001367969, intron 4 of 4)	intron (NM_001367969, intron 4 of 4)	-14511	NM_152376	127733		NM_152376	ENSG00000162543	UBXN10	UBXD3	UBX domain protein 10	protein-coding
85024	chr16	31700001	31702030	+	0	NA	intron (NR_024034, intron 1 of 8)	CpG	402	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
14046	chr1	120758971	120759130	+	0	NA	intron (NR_157049, intron 1 of 4)	L2a|LINE|L2	35111	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
226210	chr9	65673601	65674150	+	0	NA	Intergenic	Intergenic	-1959	NR_104600	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
65786	chr14	54565701	54566500	+	0	NA	Intergenic	CpG	-1028	NM_015589	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
93762	chr17	20008701	20010500	+	0	NA	intron (NM_001243439, intron 1 of 14)	CpG	241	NM_001243439	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
108049	chr18	59273371	59274030	+	0	NA	promoter-TSS (NM_013435)	promoter-TSS (NM_013435)	-246	NM_013435	30062		NM_013435	ENSG00000134438	RAX	MCOP3|MCOPS16|RAX1|RX	retina and anterior neural fold homeobox	protein-coding
238047	chrX	135421471	135423150	+	0	NA	exon (NM_203306, exon 1 of 2)	exon (NM_203306, exon 1 of 2)	366	NM_203306	399668		NM_203306	ENSG00000178947	SMIM10L2A	LED|LINC00086|LINC00087|LINC0086|NCRNA00086|NCRNA00087|SMIM10L2B	small integral membrane protein 10 like 2A	protein-coding
170923	chr3	194205721	194205980	+	0	NA	intron (NR_125403, intron 1 of 2)	intron (NR_125403, intron 1 of 2)	457	NR_125404	100505920		NR_125403		LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
7627	chr1	35559201	35560530	+	0	NA	intron (NM_014284, intron 2 of 6)	L3b|LINE|CR1	2066	NM_014284	23154		NM_014284	ENSG00000020129	NCDN	NEDIES	neurochondrin	protein-coding
110625	chr19	2215321	2215980	+	0	NA	intron (NM_032482, intron 19 of 27)	intron (NM_032482, intron 19 of 27)	18499	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
95356	chr17	35851051	35851150	+	0	NA	Intergenic	AluY|SINE|Alu	17791	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
185244	chr5	123430421	123430680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6708	NM_001375408	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
119656	chr19	40823851	40824450	+	0	NA	Intergenic	Intergenic	-13050	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
176537	chr4	98203601	98204000	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	-57584	NM_001100429	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
219150	chr8	66429801	66430250	+	0	NA	exon (NM_015169, exon 1 of 1)	exon (NM_015169, exon 1 of 1)	1011	NM_015169	23212		NM_015169	ENSG00000179041	RRS1	-	ribosome biogenesis regulator 1 homolog	protein-coding
158259	chr22	50314351	50315450	+	0	NA	exon (NM_001001794, exon 10 of 20)	exon (NM_001001794, exon 10 of 20)	-7254	NM_001376869	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
187936	chr5	149030401	149030600	+	0	NA	intron (NM_024577, intron 9 of 16)	intron (NM_024577, intron 9 of 16)	31909	NR_030310	693169		NR_030310	ENSG00000207714	MIR584	MIRN584|hsa-mir-584	microRNA 584	ncRNA
1188	chr1	2237951	2238250	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	9781	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
49785	chr12	31895851	31897480	+	0	NA	Intergenic	Intergenic	-9462	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
65053	chr14	39268401	39268950	+	0	NA	intron (NM_203355, intron 1 of 22)	intron (NM_203355, intron 1 of 22)	1290	NM_001354144	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
75257	chr15	64949821	64950080	+	0	NA	exon (NM_182703, exon 14 of 15)	exon (NM_182703, exon 14 of 15)	38048	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
31320	chr10	92747421	92748080	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	57795	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
236182	chrX	65607221	65607680	+	0	NA	Intergenic	Intergenic	-55029	NR_033742	83957		NM_032033	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
217543	chr8	29314401	29315980	+	0	NA	Intergenic	Intergenic	33615	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
119906	chr19	41588351	41589200	+	0	NA	Intergenic	Intergenic	12609	NM_001098506	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
52876	chr12	57184371	57184700	+	0	NA	intron (NM_002332, intron 38 of 88)	intron (NM_002332, intron 38 of 88)	-9969	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
63501	chr13	114224571	114226500	+	0	NA	Intergenic	Intergenic	-9310	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
22125	chr1	211824271	211824430	+	0	NA	intron (NM_001375842, intron 2 of 7)	AluSx1|SINE|Alu	-5287	NR_135818	102723727		NR_135818	ENSG00000229258	LPGAT1-AS1	-	LPGAT1 antisense RNA 1	ncRNA
193968	chr6	31704701	31705230	+	0	NA	Intergenic	AluJb|SINE|Alu	-1641	NR_033489	7920		NM_021160	ENSG00000204427	ABHD16A	BAT5|D6S82E|NG26|PP199|SPG86|hBAT5	abhydrolase domain containing 16A, phospholipase	protein-coding
7675	chr1	35774501	35775250	+	0	NA	Intergenic	Intergenic	-4897	NM_001330490	63967		NM_022111	ENSG00000092853	CLSPN	-	claspin	protein-coding
166263	chr3	112461751	112462330	+	0	NA	Intergenic	L1PA13|LINE|L1	37432	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
161796	chr3	45208501	45209080	+	0	NA	Intergenic	LTR81A|LTR|Gypsy	17497	NM_015444	25907		NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158	protein-coding
19386	chr1	174021021	174022790	+	0	NA	intron (NM_172071, intron 1 of 19)	CpG	452	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
143237	chr20	24993971	24994200	+	0	NA	Intergenic	L2c|LINE|L2	-1334	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
199280	chr6	111871071	111871740	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	1666	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
144757	chr20	36609051	36610180	+	0	NA	exon (NM_018840, exon 3 of 4)	exon (NM_018840, exon 3 of 4)	3836	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
129187	chr2	68188101	68188300	+	0	NA	intron (NM_000945, intron 3 of 5)	intron (NM_000945, intron 3 of 5)	30312	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
79153	chr16	273301	274330	+	0	NA	exon (NM_003834, exon 7 of 17)	exon (NM_003834, exon 7 of 17)	2129	NM_183337	8786		NM_003834	ENSG00000076344	RGS11	RS11	regulator of G protein signaling 11	protein-coding
80005	chr16	1915121	1915580	+	0	NA	intron (NM_001009606, intron 1 of 1)	AluSq2|SINE|Alu	3065	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
57880	chr12	123420151	123420450	+	0	NA	intron (NM_145058, intron 3 of 3)	AluYm1|SINE|Alu	16433	NR_130703	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
201821	chr6	150023701	150024230	+	0	NA	intron (NM_130900, intron 1 of 4)	ERV3-16A3_I-int|LTR|ERVL	1567	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
26815	chr10	23534471	23534830	+	0	NA	Intergenic	L2c|LINE|L2	95575	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
145671	chr20	44981101	44981480	+	0	NA	intron (NM_006282, intron 3 of 10)	AluSx3|SINE|Alu	14778	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
189521	chr5	173618551	173619280	+	0	NA	Intergenic	Intergenic	-2265	NM_138369	91272		NM_138369	ENSG00000145919	BOD1	FAM44B	biorientation of chromosomes in cell division 1	protein-coding
118874	chr19	38668501	38668850	+	0	NA	intron (NM_004924, intron 1 of 20)	AluSx3|SINE|Alu	21026	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
6522	chr1	28554821	28555080	+	0	NA	intron (NM_017846, intron 2 of 8)	intron (NM_017846, intron 2 of 8)	1865	NM_017846	54952		NM_017846	ENSG00000180098	TRNAU1AP	PRO1902|SECP43|TRSPAP1	tRNA selenocysteine 1 associated protein 1	protein-coding
214292	chr7	149087351	149088050	+	0	NA	intron (NM_152411, intron 1 of 3)	Tigger9b|DNA|TcMar-Tigger	3018	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
89597	chr16	89287051	89287430	+	0	NA	intron (NR_045839, intron 9 of 9)	MLT1E2|LTR|ERVL-MaLR	-8888	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
66727	chr14	64466401	64466600	+	0	NA	intron (NM_004857, intron 1 of 1)	intron (NM_004857, intron 1 of 1)	1001	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
91525	chr17	4974001	4974200	+	0	NA	intron (NM_001171166, intron 11 of 20)	intron (NM_001171166, intron 11 of 20)	-3950	NR_106925	102465522		NR_106925	ENSG00000278517	MIR6865	hsa-mir-6865	microRNA 6865	ncRNA
88012	chr16	81002771	81003180	+	0	NA	intron (NR_147838, intron 1 of 5)	intron (NR_147838, intron 1 of 5)	-3523	NM_001270473	55839		NM_018455	ENSG00000166451	CENPN	BM039|C16orf60|CENP-N|ICEN32	centromere protein N	protein-coding
160594	chr3	31224371	31224530	+	0	NA	Intergenic	X6A_LINE|LINE|CR1	-62663	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
13406	chr1	113969951	113970250	+	0	NA	exon (NM_001369807, exon 14 of 16)	exon (NM_001369807, exon 14 of 16)	-9291	NM_001286353	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
199001	chr6	110959571	110959730	+	0	NA	intron (NM_138408, intron 2 of 5)	AluJr|SINE|Alu	944	NM_138408	112495		NM_138408	ENSG00000155115	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC subunit 6	protein-coding
4444	chr1	21322501	21322930	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	22789	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
155670	chr22	39028301	39028650	+	0	NA	intron (NM_152426, intron 4 of 6)	MIR|SINE|MIR	7348	NM_152426	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
191949	chr6	16128621	16130200	+	0	NA	intron (NM_013262, intron 1 of 6)	CpG	324	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
199334	chr6	113879551	113879730	+	0	NA	Intergenic	Intergenic	-6293	NR_038863	285758		NR_038863	ENSG00000227502	MROCKI	LINC01268|ROCKI	MARCKS cis regulating lncRNA promoter of cytokines and inflammation	ncRNA
169217	chr3	157093251	157093350	+	0	NA	intron (NR_034008, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	3419	NR_034008	100498859		NR_034008		LINC00881	LIPTER	long intergenic non-protein coding RNA 881	ncRNA
84905	chr16	31213651	31213980	+	0	NA	promoter-TSS (NM_001008274)	promoter-TSS (NM_001008274)	-304	NM_001008274	493829		NM_001008274	ENSG00000177238	TRIM72	MG53	tripartite motif containing 72	protein-coding
47042	chr12	459601	461080	+	0	NA	5' UTR (NM_173593, exon 1 of 20)	5' UTR (NM_173593, exon 1 of 20)	401	NM_173593	283358		NM_173593	ENSG00000139044	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein-coding
146523	chr20	49928401	49929830	+	0	NA	TTS (NR_134564)	TTS (NR_134564)	-7282	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
149720	chr21	34094151	34094450	+	0	NA	intron (NM_032476, intron 1 of 2)	intron (NM_032476, intron 1 of 2)	20722	NM_006933	6526		NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
104432	chr17	81079271	81079430	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	-3639	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
46105	chr11	122875221	122875480	+	0	NA	Intergenic	AluSx|SINE|Alu	-7178	NM_199124	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
11803	chr1	92783901	92784810	+	0	NA	5' UTR (NM_001377210, exon 1 of 19)	5' UTR (NM_001377210, exon 1 of 19)	753	NM_001377210	7813		NM_005665	ENSG00000067208	EVI5	EVI-5|NB4S	ecotropic viral integration site 5	protein-coding
3623	chr1	16376021	16376280	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	8908	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
127893	chr2	46223221	46223950	+	0	NA	Intergenic	L1MD1|LINE|L1	-73822	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
226804	chr9	77169171	77169780	+	0	NA	Intergenic	AluSx|SINE|Alu	-7970	NM_015186	23230		NM_015186	ENSG00000197969	VPS13A	BLTP5A|CHAC|CHOREIN	vacuolar protein sorting 13 homolog A	protein-coding
108076	chr18	59906671	59907650	+	0	NA	Intergenic	MIRb|SINE|MIR	7164	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
224945	chr9	33037071	33037800	+	0	NA	intron (NM_001314039, intron 7 of 7)	AluJb|SINE|Alu	12162	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
143010	chr20	20602751	20603950	+	0	NA	intron (NM_020343, intron 15 of 39)	L4_A_Mam|LINE|RTE-X	109294	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
216851	chr8	22608451	22608930	+	0	NA	intron (NM_021174, intron 7 of 20)	intron (NM_021174, intron 7 of 20)	3648	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
85394	chr16	50299471	50299950	+	0	NA	intron (NM_001114, intron 8 of 25)	intron (NM_001114, intron 8 of 25)	7094	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
13355	chr1	113866801	113867830	+	0	NA	intron (NM_012411, intron 1 of 18)	MIRb|SINE|MIR	4397	NM_015967	26191		NM_012411	ENSG00000134242	PTPN22	LYP|LYP1|LYP2|PEP|PTPN22.5|PTPN22.6|PTPN8	protein tyrosine phosphatase non-receptor type 22	protein-coding
12835	chr1	110051951	110052550	+	0	NA	intron (NR_073071, intron 21 of 21)	L2|LINE|L2	17626	NM_033088	85369		NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
235154	chrX	41115011	41115650	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	29885	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
193640	chr6	30817171	30817550	+	0	NA	intron (NR_130726, intron 1 of 1)	intron (NR_130726, intron 1 of 1)	13299	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
24387	chr1	241896351	241896550	+	0	NA	Intergenic	Intergenic	47719	NM_006027	9156		NM_003686	ENSG00000174371	EXO1	HEX1|hExoI	exonuclease 1	protein-coding
163749	chr3	52357101	52357400	+	0	NA	intron (NM_015512, intron 22 of 77)	AluSq2|SINE|Alu	40931	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
173223	chr4	6908871	6911230	+	0	NA	intron (NM_020773, intron 1 of 13)	CpG	224	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
46498	chr11	128361501	128361700	+	0	NA	Intergenic	Intergenic	152834	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
47554	chr12	4291501	4291700	+	0	NA	intron (NM_001759, intron 4 of 4)	intron (NM_001759, intron 4 of 4)	-15416	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
43756	chr11	86151551	86152330	+	0	NA	Intergenic	Intergenic	-82080	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
66915	chr14	65321371	65321530	+	0	NA	Intergenic	Intergenic	13733	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
203590	chr7	925501	926400	+	0	NA	intron (NM_006869, intron 3 of 10)	intron (NM_006869, intron 3 of 10)	1266	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
113091	chr19	8271351	8272330	+	0	NA	Intergenic	AluY|SINE|Alu	36518	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
153011	chr22	23201021	23201430	+	0	NA	intron (NM_021574, intron 1 of 21)	MLT1E1A|LTR|ERVL-MaLR	20716	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
35737	chr11	2094371	2094830	+	0	NA	Intergenic	Intergenic	39609	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
145358	chr20	41149321	41149830	+	0	NA	intron (NM_182811, intron 1 of 31)	L2|LINE|L2	-11575	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
159721	chr3	15747051	15747550	+	0	NA	intron (NM_001349280, intron 3 of 26)	L1PBa|LINE|L1	9247	NM_001195099	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
214127	chr7	144218871	144219430	+	0	NA	intron (NR_126022, intron 2 of 4).3	intron (NR_126022, intron 2 of 4).3	13693	NM_001001802	402317		NM_001001802	ENSG00000212807	OR2A42	-	olfactory receptor family 2 subfamily A member 42	protein-coding
45362	chr11	118258471	118258780	+	0	NA	intron (NM_005797, intron 4 of 5)	MSTA|LTR|ERVL-MaLR	5672	NM_005797	10205		NM_005797	ENSG00000149573	MPZL2	DFNB111|EVA|EVA1	myelin protein zero like 2	protein-coding
173347	chr4	7783551	7784280	+	0	NA	intron (NM_001134647, intron 12 of 17)	intron (NM_001134647, intron 12 of 17)	29825	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
100720	chr17	63880951	63881450	+	0	NA	intron (NM_022557, intron 2 of 3)	intron (NM_022557, intron 2 of 3)	744	NM_022558	2689		NM_002059	ENSG00000136487	GH2	GH-V|GHB2|GHL|GHV|hGH-V	growth hormone 2	protein-coding
217270	chr8	27335571	27335930	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	10186	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
154382	chr22	35171921	35172000	+	0	NA	intron (NR_126356, intron 3 of 5)	AluSq|SINE|Alu	59096	NR_126356	104310353		NR_126356	ENSG00000293220	LINC01399	-	long intergenic non-protein coding RNA 1399	ncRNA
216965	chr8	23017351	23018700	+	0	NA	3' UTR (NM_001374791, exon 10 of 10)	3' UTR (NM_001374791, exon 10 of 10)	18477	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
169030	chr3	152524571	152524750	+	0	NA	Intergenic	Intergenic	-183670	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
184628	chr5	107363051	107363550	+	0	NA	Intergenic	Intergenic	307637	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
87251	chr16	69765951	69766250	+	0	NA	intron (NM_001270455, intron 1 of 8)	L2a|LINE|L2	3768	NM_001270454	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
68286	chr14	77123401	77124000	+	0	NA	Intergenic	Intergenic	17044	NM_001364172	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
198518	chr6	106522651	106523100	+	0	NA	intron (NM_001371242, intron 4 of 21)	intron (NM_001371242, intron 4 of 21)	11020	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
233403	chr9	137565901	137566380	+	0	NA	intron (NM_001346386, intron 4 of 7)	intron (NM_001346386, intron 4 of 7)	12452	NM_001346373	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
39929	chr11	62533151	62533450	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	12364	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
193996	chr6	31775951	31776050	+	0	NA	exon (NM_025258, exon 3 of 17).6	exon (NM_025258, exon 3 of 17).6	1328	NM_025258	80737		NM_025258	ENSG00000204396	VWA7	C6orf27|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding
90424	chr17	1347621	1348200	+	0	NA	intron (NR_024058, intron 6 of 6)	intron (NR_024058, intron 6 of 6)	52312	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
124195	chr19	56312521	56312780	+	0	NA	intron (NM_001322061, intron 2 of 6)	L1MD3|LINE|L1	1914	NM_001322066	79149		NM_024303	ENSG00000131848	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
161768	chr3	44966971	44967330	+	0	NA	intron (NM_001135179, intron 1 of 6)	intron (NM_001135179, intron 1 of 6)	9024	NR_146162	51304		NM_016598	ENSG00000163812	ZDHHC3	DHHC-3|DHHC3|GODZ|ZNF373	zinc finger DHHC-type palmitoyltransferase 3	protein-coding
72679	chr15	38548571	38549000	+	0	NA	intron (NM_001128602, intron 2 of 15)	L1MC5|LINE|L1	16029	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
78277	chr15	90873751	90873850	+	0	NA	intron (NM_001289824, intron 1 of 15)	intron (NM_001289824, intron 1 of 15)	946	NM_001382621	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
191588	chr6	12037801	12038500	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	25838	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
68073	chr14	75267671	75267900	+	0	NA	Intergenic	Intergenic	-11043	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
234124	chrX	9732701	9733100	+	0	NA	intron (NM_000273, intron 8 of 8)	intron (NM_000273, intron 8 of 8)	32947	NM_000273	4935		NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
109985	chr19	1411001	1411250	+	0	NA	intron (NM_170711, intron 1 of 12)	intron (NM_170711, intron 1 of 12)	3539	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
47235	chr12	990371	991980	+	0	NA	promoter-TSS (NR_027949)	promoter-TSS (NR_027949)	-48	NM_178039	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
119802	chr19	41334071	41334430	+	0	NA	intron (NM_000660, intron 5 of 6)	AluSz6|SINE|Alu	19672	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
207523	chr7	44808351	44809230	+	0	NA	Intergenic	L1MB7|LINE|L1	12109	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
3710	chr1	16593251	16593550	+	0	NA	intron (NM_017940, intron 5 of 28)	intron (NM_017940, intron 5 of 28)	20164	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
177290	chr4	109586971	109587400	+	0	NA	intron (NM_017918, intron 1 of 7)	L1PA6|LINE|L1	26939	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
66845	chr14	64928101	64929530	+	0	NA	intron (NM_001202559, intron 3 of 13)	intron (NM_001202559, intron 3 of 13)	13930	NR_046320	2877		NM_002083	ENSG00000176153	GPX2	GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2	glutathione peroxidase 2	protein-coding
23781	chr1	233326921	233328000	+	0	NA	promoter-TSS (NM_032435)	promoter-TSS (NM_032435)	-264	NM_032435	84451		NM_032435	ENSG00000143674	MAP3K21	MLK4|dJ862P8.3	mitogen-activated protein kinase kinase kinase 21	protein-coding
225686	chr9	36483751	36484400	+	0	NA	Intergenic	Intergenic	-82877	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
142548	chr20	5118701	5121030	+	0	NA	promoter-TSS (NM_182649)	promoter-TSS (NM_182649)	93	NM_182649	5111		NM_002592	ENSG00000132646	PCNA	ATLD2	proliferating cell nuclear antigen	protein-coding
93996	chr17	22513151	22513250	+	0	NA	Intergenic	Intergenic	-9911	NM_001190452	100462977		NM_001190452		MTRNR2L1	HN1	MT-RNR2 like 1 (pseudogene)	pseudo
196731	chr6	45310171	45310930	+	0	NA	intron (NM_001350329, intron 2 of 10)	L1PB1|LINE|L1	-17767	NM_001015051	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
237918	chrX	131986801	131987780	+	0	NA	Intergenic	L1MA5|LINE|L1	-36012	NM_001042453	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
125180	chr2	10078901	10080700	+	0	NA	intron (NM_001037160, intron 1 of 2)	CpG	611	NM_001037160	192668		NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
195287	chr6	36517771	36518330	+	0	NA	intron (NM_007271, intron 5 of 13)	intron (NM_007271, intron 5 of 13)	29429	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
137070	chr2	190906451	190907550	+	0	NA	intron (NM_014905, intron 6 of 17)	AluYm1|SINE|Alu	26179	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
144328	chr20	34957001	34957400	+	0	NA	intron (NM_020884, intron 1 of 44)	intron (NM_020884, intron 1 of 44)	-1173	NM_001322494	2937		NM_000178	ENSG00000100983	GSS	GSHS|HEL-S-64p|HEL-S-88n	glutathione synthetase	protein-coding
123820	chr19	55181571	55182130	+	0	NA	exon (NM_002842, exon 20 of 20)	exon (NM_002842, exon 20 of 20)	-1561	NM_003180	6861		NM_003180	ENSG00000129990	SYT5	-	synaptotagmin 5	protein-coding
227396	chr9	89525671	89526400	+	0	NA	Intergenic	Intergenic	-27922	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
175733	chr4	77706571	77707350	+	0	NA	Intergenic	Intergenic	101140	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
215157	chr7	155509671	155510230	+	0	NA	promoter-TSS (NM_001369821)	promoter-TSS (NM_001369821)	-76	NR_163167	285888		NM_001103176	ENSG00000146910	CNPY1	-	canopy FGF signaling regulator 1	protein-coding
58287	chr12	130646151	130646400	+	0	NA	intron (NM_001351226, intron 1 of 21)	intron (NM_001351226, intron 1 of 21)	-12355	NM_001351232	23504		NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
187832	chr5	146890801	146891000	+	0	NA	intron (NM_001271900, intron 2 of 10)	intron (NM_001271900, intron 2 of 10)	-11973	NR_073527	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
806	chr1	1554171	1554330	+	0	NA	intron (NM_014188, intron 2 of 4)	CpG	-13626	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
41000	chr11	65413701	65413900	+	0	NA	TTS (NM_001300833)	TTS (NM_001300833)	-8998	NR_028272	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
167168	chr3	128072601	128072930	+	0	NA	intron (NM_001319086, intron 9 of 9)	intron (NM_001319086, intron 9 of 9)	-3045	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
182446	chr5	62311821	62312280	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	5844	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
54752	chr12	93898601	93899000	+	0	NA	intron (NR_135017, intron 2 of 2)	LTR39|LTR|ERV1	44806	NR_135017	105369911		NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
22977	chr1	226080521	226081130	+	0	NA	Intergenic	AluJo|SINE|Alu	-2750	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
87450	chr16	71230671	71230830	+	0	NA	promoter-TSS (NM_001198542).2	promoter-TSS (NM_001198542).2	-28	NM_001198543	54768		NM_017558	ENSG00000157423	HYDIN	CILD5|HYDIN1|HYDIN2|PPP1R31	HYDIN axonemal central pair apparatus protein	protein-coding
52689	chr12	56487351	56488670	+	0	NA	exon (NM_013267, exon 1 of 18)	exon (NM_013267, exon 1 of 18)	151	NM_013267	27165		NM_013267	ENSG00000135423	GLS2	GA|GLS|LGA|hLGA	glutaminase 2	protein-coding
8242	chr1	39761421	39761680	+	0	NA	intron (NM_001720, intron 6 of 6)	L2a|LINE|L2	9798	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
46604	chr11	128550851	128551280	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	24923	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
159677	chr3	15430501	15431130	+	0	NA	intron (NM_033083, intron 2 of 5)	intron (NM_033083, intron 2 of 5)	3217	NM_033083	85403		NM_033083	ENSG00000144597	EAF1	-	ELL associated factor 1	protein-coding
181282	chr5	39399151	39399850	+	0	NA	intron (NM_001343, intron 1 of 14)	intron (NM_001343, intron 1 of 14)	25480	NM_001343	1601		NM_001343	ENSG00000153071	DAB2	DOC-2|DOC2	DAB adaptor protein 2	protein-coding
5206	chr1	24969171	24969330	+	0	NA	Intergenic	Intergenic	-4240	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
140985	chr2	237998301	237999450	+	0	NA	intron (NR_037904, intron 4 of 18)	L1ME2|LINE|L1	30082	NM_001278305	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
11263	chr1	89059301	89059780	+	0	NA	intron (NM_002053, intron 3 of 10)	(T)n|Simple_repeat|Simple_repeat	5668	NM_002053	2633		NM_002053	ENSG00000117228	GBP1	hGBP1	guanylate binding protein 1	protein-coding
79335	chr16	580351	580750	+	0	NA	intron (NM_004204, intron 8 of 10)	intron (NM_004204, intron 8 of 10)	-8807	NM_001172663	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
181913	chr5	54743021	54743280	+	0	NA	intron (NR_104658, intron 1 of 2)	MIRb|SINE|MIR	1108	NR_104658	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
185658	chr5	131563701	131564100	+	0	NA	intron (NM_016340, intron 4 of 27)	L1MEc|LINE|L1	71329	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
61769	chr13	74316501	74316730	+	0	NA	Intergenic	Intergenic	85171	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
65761	chr14	54392721	54392980	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4018	NM_001330173	1033		NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
23823	chr1	234498951	234499480	+	0	NA	Intergenic	Intergenic	-20036	NM_005646	6894		NM_005646	ENSG00000059588	TARBP1	TRM3|TRMT3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
202170	chr6	155333651	155333950	+	0	NA	Intergenic	Intergenic	-19316	NR_146725	51106		NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
211841	chr7	108538271	108538430	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-10172	NM_001256011	50640		NM_015723	ENSG00000135241	PNPLA8	IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma	patatin like phospholipase domain containing 8	protein-coding
102676	chr17	76102851	76104600	+	0	NA	promoter-TSS (NM_015219)	promoter-TSS (NM_015219)	62	NM_001375974	23265		NM_015219	ENSG00000182473	EXOC7	2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|NEDSEBA|YJL085W	exocyst complex component 7	protein-coding
165210	chr3	72847271	72847430	+	0	NA	intron (NM_018130, intron 1 of 10)	intron (NM_018130, intron 1 of 10)	1095	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
23992	chr1	235232171	235232580	+	0	NA	intron (NM_016374, intron 9 of 23)	AluSq2|SINE|Alu	-42259	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
61538	chr13	60369151	60369730	+	0	NA	Intergenic	MIR|SINE|MIR	-27017	NM_001146071	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
188212	chr5	150705021	150705680	+	0	NA	Intergenic	AluSg|SINE|Alu	-4288	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
18580	chr1	164651521	164651800	+	0	NA	intron (NM_001353131, intron 2 of 7)	intron (NM_001353131, intron 2 of 7)	91938	NM_001353130	5087		NM_002585	ENSG00000185630	PBX1	CAKUHED	PBX homeobox 1	protein-coding
233291	chr9	137317671	137317900	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-15514	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
7036	chr1	31931501	31931950	+	0	NA	intron (NM_001369859, intron 1 of 6)	intron (NM_001369859, intron 1 of 6)	6093	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
185908	chr5	132814951	132815050	+	0	NA	exon (NM_175873, exon 1 of 1)	exon (NM_175873, exon 1 of 1)	1698	NM_175873	134548		NM_175873	ENSG00000198944	SOWAHA	ANKRD43	sosondowah ankyrin repeat domain family member A	protein-coding
226085	chr9	62798911	62799300	+	0	NA	Intergenic	Intergenic	-2360	NR_121647	103352539		NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
157479	chr22	45306401	45306600	+	0	NA	Intergenic	Intergenic	-2460	NR_146323	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
188983	chr5	163520501	163520700	+	0	NA	Intergenic	AluSc5|SINE|Alu	14981	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
175634	chr4	76251301	76251930	+	0	NA	promoter-TSS (NM_001242939)	promoter-TSS (NM_001242939)	-85	NM_001242939	100631383		NM_001242939	ENSG00000272414	FAM47E-STBD1	FAM47E	FAM47E-STBD1 readthrough	protein-coding
142989	chr20	20216081	20216780	+	0	NA	intron (NM_015585, intron 17 of 26)	intron (NM_015585, intron 17 of 26)	-151674	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
134092	chr2	131672421	131673230	+	0	NA	Intergenic	Intergenic	-9674	NR_149016	29798		NM_013310	ENSG00000287151	LINC03124	C2orf27|C2orf27A|C2orf27B	long intergenic non-protein coding RNA 3124	ncRNA
82795	chr16	21463751	21464050	+	0	NA	non-coding (NR_027155, exon 13 of 29)	non-coding (NR_027155, exon 13 of 29)	-29445	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
196609	chr6	44243871	44244630	+	0	NA	Intergenic	Intergenic	-1916	NM_001271970	3326		NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
128487	chr2	58237071	58237230	+	0	NA	intron (NR_164659, intron 1 of 11)	L1MEc|LINE|L1	4157	NR_164659	55120		NM_018062	ENSG00000115392	FANCL	FAAP43|PHF9|POG	FA complementation group L	protein-coding
37183	chr11	14090401	14091150	+	0	NA	intron (NM_006108, intron 5 of 15)	LTR12C|LTR|ERV1	128052	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
174272	chr4	38162401	38162600	+	0	NA	Intergenic	LTR78|LTR|ERV1	42546	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
56726	chr12	120118601	120118930	+	0	NA	Intergenic	MIRc|SINE|MIR	-2012	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
43548	chr11	82932321	82932800	+	0	NA	exon (NM_001363481, exon 5 of 5)	exon (NM_001363481, exon 5 of 5)	-30820	NM_001319214	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
3309	chr1	15385921	15386730	+	0	NA	intron (NM_052929, intron 30 of 30)	intron (NM_052929, intron 30 of 30)	-23563	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
82760	chr16	21424751	21425280	+	0	NA	exon (NM_130464, exon 2 of 13)	exon (NM_130464, exon 2 of 13)	363	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
747	chr1	1492071	1492830	+	0	NA	intron (NM_031921, intron 15 of 15)	AluSx1|SINE|Alu	14601	NM_001317238	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
204147	chr7	2379801	2380280	+	0	NA	intron (NM_001362791, intron 18 of 18)	intron (NM_001362791, intron 18 of 18)	-23571	NM_001243795	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
134149	chr2	134207501	134207910	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-46367	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
121417	chr19	47003571	47004350	+	0	NA	3' UTR (NM_004491, exon 7 of 7)	3' UTR (NM_004491, exon 7 of 7)	-15877	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
145727	chr20	45052771	45053630	+	0	NA	intron (NM_001352385, intron 11 of 11)	intron (NM_001352385, intron 11 of 11)	47927	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
196959	chr6	52882021	52883000	+	0	NA	Intergenic	Intergenic	27188	NM_001363542	2940		NM_000847	ENSG00000174156	GSTA3	GSTA3-3|GTA3	glutathione S-transferase alpha 3	protein-coding
175116	chr4	54709251	54709750	+	0	NA	exon (NM_000222, exon 7 of 21)	exon (NM_000222, exon 7 of 21)	51543	NM_001093772	3815		NM_000222	ENSG00000157404	KIT	C-Kit|CD117|MASTC|PBT|SCFR	KIT proto-oncogene, receptor tyrosine kinase	protein-coding
169503	chr3	169930271	169930430	+	0	NA	intron (NM_001304366, intron 7 of 8)	intron (NM_001304366, intron 7 of 8)	18778	NM_001304366	344658		NM_182610	ENSG00000187033	SAMD7	MDCD	sterile alpha motif domain containing 7	protein-coding
166700	chr3	120593801	120594000	+	0	NA	Intergenic	Intergenic	-2436	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
21426	chr1	205323501	205324150	+	0	NA	Intergenic	Intergenic	-2080	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
63923	chr14	21992071	21992230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-321133	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
218450	chr8	47998771	47999200	+	0	NA	Intergenic	LTR21A|LTR|ERV1	-9446	NM_003350	7336		NM_003350	ENSG00000169139	UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin conjugating enzyme E2 V2	protein-coding
63892	chr14	21854321	21854800	+	0	NA	Intergenic	Intergenic	-183543	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
114478	chr19	12747221	12747950	+	0	NA	exon (NM_004317, exon 6 of 7)	exon (NM_004317, exon 6 of 7)	-4206	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
185371	chr5	127590201	127590700	+	0	NA	Intergenic	Intergenic	-58571	NM_001048252	613212		NM_001048252	ENSG00000205279	CTXN3	KABE	cortexin 3	protein-coding
121591	chr19	47336701	47337230	+	0	NA	promoter-TSS (NM_018485)	promoter-TSS (NM_018485)	-130	NM_018485	27202		NM_018485	ENSG00000134830	C5AR2	C5L2|GPF77|GPR77	complement C5a receptor 2	protein-coding
193892	chr6	31599551	31599650	+	0	NA	Intergenic	Intergenic	-6594	NM_001145466	259197		NM_147130	ENSG00000204475	NCR3	1C7|CD337|LY117|MALS|NKp30	natural cytotoxicity triggering receptor 3	protein-coding
234999	chrX	39816901	39817100	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-20561	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
104997	chr17	82017371	82017530	+	0	NA	TTS (NM_001330528)	TTS (NM_001330528)	5428	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
74596	chr15	60571021	60571830	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	21101	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
110740	chr19	2327251	2329800	+	0	NA	promoter-TSS (NM_001077238)	promoter-TSS (NM_001077238)	61	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
62877	chr13	110646751	110647250	+	0	NA	intron (NM_001352252, intron 12 of 15)	intron (NM_001352252, intron 12 of 15)	31372	NM_001242881	55739		NM_018210	ENSG00000213995	NAXD	CARKD|LP3298|PEBEL2	NAD(P)HX dehydratase	protein-coding
44897	chr11	114803001	114803200	+	0	NA	Intergenic	Intergenic	124573	NM_182495	120406		NM_182495	ENSG00000204361	NXPE2	FAM55B	neurexophilin and PC-esterase domain family member 2	protein-coding
156324	chr22	40650351	40650650	+	0	NA	Intergenic	MIR|SINE|MIR	-13781	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
165037	chr3	71421871	71423230	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-117779	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
22624	chr1	223628251	223628650	+	0	NA	intron (NM_001143962, intron 3 of 20)	intron (NM_001143962, intron 3 of 20)	37251	NM_001143962	388743		NM_001143962	ENSG00000203697	CAPN8	nCL-2	calpain 8	protein-coding
13133	chr1	111654801	111655230	+	0	NA	intron (NM_001010935, intron 2 of 8)	FRAM|SINE|Alu	-9779	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
208879	chr7	73826871	73827030	+	0	NA	Intergenic	MIR3|SINE|MIR	-4046	NM_001305	1364		NM_001305	ENSG00000189143	CLDN4	CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R	claudin 4	protein-coding
138877	chr2	217222621	217222880	+	0	NA	Intergenic	Intergenic	-59983	NR_133642	105373877		NR_133642		DIRC3-AS1	-	DIRC3 antisense RNA 1	ncRNA
37728	chr11	31397251	31397580	+	0	NA	intron (NM_181706, intron 2 of 4)	intron (NM_181706, intron 2 of 4)	27555	NM_181706	120526		NM_181706	ENSG00000170946	DNAJC24	DPH4|JJJ3|ZCSL3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding
227368	chr9	89489421	89490400	+	0	NA	intron (NM_001371194, intron 1 of 15)	L1MB5|LINE|L1	5746	NM_001371198	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
77870	chr15	88906751	88907050	+	0	NA	intron (NM_001114614, intron 3 of 6)	intron (NM_001114614, intron 3 of 6)	6268	NM_001310321	4240		NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule EGF and factor V/VIII domain containing	protein-coding
92931	chr17	16746571	16746800	+	0	NA	intron (NR_130142, intron 11 of 15)	intron (NR_130142, intron 11 of 15)	-40207	NR_003190	162632		NR_003190	ENSG00000290976	USP32P1	-	ubiquitin specific peptidase 32 pseudogene 1	pseudo
71311	chr14	105362071	105362850	+	0	NA	intron (NM_001243127, intron 4 of 23)	Tigger1|DNA|TcMar-Tigger	-36078	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
75319	chr15	65305971	65306480	+	0	NA	Intergenic	AluJb|SINE|Alu	1548	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
72886	chr15	40315051	40315350	+	0	NA	Intergenic	LTR16|LTR|ERVL	-7265	NM_001284297	5330		NM_004573	ENSG00000137841	PLCB2	PLC-beta-2	phospholipase C beta 2	protein-coding
26945	chr10	26509451	26509550	+	0	NA	intron (NM_019043, intron 6 of 14)	intron (NM_019043, intron 6 of 14)	69807	NR_134472	101929117		NR_134472		LINC03028	-	long intergenic non-protein coding RNA 3028	ncRNA
42587	chr11	72011521	72011780	+	0	NA	intron (NR_104476, intron 14 of 24)	intron (NR_104476, intron 14 of 24)	-2641	NR_104178	100128494		NR_104178	ENSG00000251143	LOC100128494	-	uncharacterized LOC100128494	ncRNA
32519	chr10	102796121	102796850	+	0	NA	intron (NM_017787, intron 1 of 3)	intron (NM_017787, intron 1 of 3)	20264	NM_017787	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
167196	chr3	128295051	128295980	+	0	NA	intron (NM_021937, intron 4 of 6)	intron (NM_021937, intron 4 of 6)	-141601	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
91422	chr17	4717151	4718050	+	0	NA	intron (NM_001257330, intron 6 of 14)	intron (NM_001257330, intron 6 of 14)	6968	NM_199004	409		NM_004313	ENSG00000141480	ARRB2	ARB2|ARR2|BARR2	arrestin beta 2	protein-coding
157446	chr22	45243851	45244150	+	0	NA	Intergenic	AluJb|SINE|Alu	-3106	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
105930	chr18	3511821	3512550	+	0	NA	intron (NM_001242763, intron 8 of 10)	intron (NM_001242763, intron 8 of 10)	45935	NR_110429	100505592		NR_110428	ENSG00000266835	GAPLINC	LINC01540	gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA	ncRNA
143285	chr20	25259551	25260230	+	0	NA	intron (NM_002862, intron 2 of 19)	intron (NM_002862, intron 2 of 19)	11805	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
136702	chr2	181141651	181141980	+	0	NA	intron (NR_130784, intron 1 of 4)	L2c|LINE|L2	17978	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
129135	chr2	65338051	65338150	+	0	NA	intron (NM_181784, intron 2 of 5)	Charlie1a|DNA|hAT-Charlie	28678	NM_001128210	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
76344	chr15	74432451	74432550	+	0	NA	intron (NM_001146029, intron 1 of 12)	intron (NM_001146029, intron 1 of 12)	1204	NM_001146030	8482		NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|PFIC11|SEMAK1|SEMAL	semaphorin 7A (JohnMiltonHagen blood group)	protein-coding
48848	chr12	12376221	12377300	+	0	NA	intron (NM_058169, intron 2 of 3)	intron (NM_058169, intron 2 of 3)	19682	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
75117	chr15	64509771	64510130	+	0	NA	intron (NM_015042, intron 2 of 9)	Tigger7|DNA|TcMar-Tigger	49372	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
152832	chr22	21956871	21957030	+	0	NA	TTS (NM_001349852)	TTS (NM_001349852)	-4102	NM_014634	9647		NM_014634	ENSG00000100034	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent 1F	protein-coding
55787	chr12	108627121	108627550	+	0	NA	intron (NM_003006, intron 1 of 1)	intron (NM_003006, intron 1 of 1)	4746	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
154154	chr22	31277771	31278480	+	0	NA	TTS (NM_001031801)	TTS (NM_001031801)	14363	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
5628	chr1	26166771	26167630	+	0	NA	intron (NM_001364667, intron 1 of 2)	intron (NM_001364667, intron 1 of 2)	1382	NM_001364667	110806296		NM_001364667	ENSG00000282872	C1orf232	-	chromosome 1 open reading frame 230	protein-coding
10816	chr1	77882471	77882700	+	0	NA	intron (NR_103535, intron 2 of 2)	MLT1F|LTR|ERVL-MaLR	-5930	NM_001172309	91624		NM_144573	ENSG00000162614	NEXN	CMH20|NELIN	nexilin F-actin binding protein	protein-coding
229707	chr9	124776821	124778000	+	0	NA	intron (NM_182487, intron 1 of 7)	CpG	277	NM_182487	169611		NM_182487	ENSG00000185585	OLFML2A	PRO34319	olfactomedin like 2A	protein-coding
232647	chr9	136476001	136476380	+	0	NA	exon (NM_001276418, exon 2 of 29)	exon (NM_001276418, exon 2 of 29)	-6820	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
102649	chr17	76057001	76057200	+	0	NA	intron (NR_048541, intron 7 of 14)	intron (NR_048541, intron 7 of 14)	-3444	NM_001260503	6730		NM_014230	ENSG00000167881	SRP68	SCN10	signal recognition particle 68	protein-coding
118323	chr19	35545021	35546680	+	0	NA	TTS (NM_014364)	TTS (NM_014364)	179	NR_038396	100506469		NR_038396	ENSG00000236144	TMEM147-AS1	-	TMEM147 antisense RNA 1	ncRNA
165804	chr3	105811671	105812600	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	55456	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
176585	chr4	98892251	98892750	+	0	NA	intron (NM_001130678, intron 2 of 6)	AluSx|SINE|Alu	36633	NM_001130678	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
39423	chr11	60871101	60872130	+	0	NA	intron (NM_207341, intron 6 of 11)	intron (NM_207341, intron 6 of 11)	4073	NM_207341	22917		NM_207341	ENSG00000149506	ZP1	HEL163|OOMD|OOMD1|OZEMA1|ZPB1	zona pellucida glycoprotein 1	protein-coding
150762	chr21	43788071	43788230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1427	NM_003683	8568		NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
191872	chr6	15300521	15301380	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	52095	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
69017	chr14	91507851	91508380	+	0	NA	intron (NR_158976, intron 2 of 16)	intron (NR_158976, intron 2 of 16)	2195	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
39375	chr11	59756951	59757650	+	0	NA	intron (NM_004177, intron 1 of 10)	intron (NM_004177, intron 1 of 10)	1924	NM_001178040	6809		NM_004177	ENSG00000166900	STX3	DIAR12|MVID2|RDMVID|STX3A	syntaxin 3	protein-coding
140492	chr2	233193451	233194350	+	0	NA	exon (NM_005541, exon 23 of 27).2	exon (NM_005541, exon 23 of 27).2	-57671	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
68592	chr14	89507471	89508230	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	-68366	NR_024620	29018		NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
138371	chr2	203988101	203988300	+	0	NA	Intergenic	Intergenic	51437	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123571	chr19	54450951	54451600	+	0	NA	intron (NM_001375640, intron 1 of 14).3	intron (NM_001375640, intron 1 of 14).3	1618	NM_001375640	114823		NM_052925	ENSG00000167615	LENG8	pp13842	leukocyte receptor cluster member 8	protein-coding
118247	chr19	35225171	35225730	+	0	NA	intron (NM_152481, intron 1 of 1)	MIRb|SINE|MIR	3275	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
79213	chr16	359251	359930	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-6867	NM_181050	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
164090	chr3	56555321	56556000	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1496	NR_148372	285331		NM_001012506	ENSG00000180376	CCDC66	-	coiled-coil domain containing 66	protein-coding
48141	chr12	7911721	7913280	+	0	NA	Intergenic	AluSq2|SINE|Alu	-21304	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
230991	chr9	129495351	129496400	+	0	NA	intron (NR_038955, intron 2 of 4)	MIRc|SINE|MIR	7215	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
206253	chr7	29255821	29256350	+	0	NA	intron (NM_001293072, intron 1 of 12)	intron (NM_001293072, intron 1 of 12)	-47115	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
237692	chrX	124367321	124367580	+	0	NA	intron (NM_002351, intron 2 of 3)	intron (NM_002351, intron 2 of 3)	20887	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
130141	chr2	74844851	74844950	+	0	NA	intron (NM_001371525, intron 1 of 17)	L2c|LINE|L2	9730	NM_001371525	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
182479	chr5	62394301	62394500	+	0	NA	intron (NM_001348077, intron 7 of 11)	AluJb|SINE|Alu	9505	NM_014473	27292		NM_014473	ENSG00000086189	DIMT1	DIM1|DIMT1L|HSA9761|HUSSY5	DIM1 rRNA methyltransferase and ribosome maturation factor	protein-coding
69834	chr14	99232601	99233830	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	38982	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
99570	chr17	50468771	50469880	+	0	NA	promoter-TSS (NM_001267)	promoter-TSS (NM_001267)	-445	NM_001267	1101		NM_001267	ENSG00000136457	CHAD	SLRR4A	chondroadherin	protein-coding
216728	chr8	22438751	22439400	+	0	NA	Intergenic	AluSx|SINE|Alu	-1895	NM_001243974	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
33142	chr10	112381251	112381550	+	0	NA	intron (NM_016234, intron 1 of 20)	AluSz|SINE|Alu	5202	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
218044	chr8	38806301	38806750	+	0	NA	intron (NM_001352791, intron 1 of 11)	intron (NM_001352791, intron 1 of 11)	1075	NM_001352802	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
57355	chr12	121778471	121778630	+	0	NA	3' UTR (NM_019034, exon 5 of 5)	3' UTR (NM_019034, exon 5 of 5)	15138	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
59228	chr13	23574801	23575200	+	0	NA	intron (NM_001204459, intron 1 of 7)	MamTip3|DNA|hAT-Tip100	-4360	NM_001354985	55504		NM_018647	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	TNF receptor superfamily member 19	protein-coding
126499	chr2	28405571	28405930	+	0	NA	intron (NM_005253, intron 2 of 3)	intron (NM_005253, intron 2 of 3)	-11078	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
21648	chr1	206668151	206668700	+	0	NA	Intergenic	L2|LINE|L2	-16480	NM_032960	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
15960	chr1	151847771	151847930	+	0	NA	exon (NM_182578, exon 5 of 6)	exon (NM_182578, exon 5 of 6)	5862	NM_182578	284486		NM_182578	ENSG00000196407	THEM5	ACOT15	thioesterase superfamily member 5	protein-coding
68261	chr14	77032301	77033200	+	0	NA	non-coding (NR_169510, exon 2 of 2)	non-coding (NR_169510, exon 2 of 2)	1456	NR_169510	105370579		NR_169510		LOC105370579	-	uncharacterized LOC105370579	ncRNA
64430	chr14	24193251	24193350	+	0	NA	intron (NM_001289006, intron 2 of 5).2	intron (NM_001289006, intron 2 of 5).2	2141	NM_006405	10548		NM_006405	ENSG00000100926	TM9SF1	HMP70|MP70	transmembrane 9 superfamily member 1	protein-coding
153005	chr22	23185401	23186400	+	0	NA	intron (NM_021574, intron 1 of 21)	AluY|SINE|Alu	5391	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
34267	chr10	131883251	131883830	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-17468	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
185877	chr5	132664101	132664850	+	0	NA	Intergenic	Intergenic	6302	NM_002188	3596		NM_002188	ENSG00000169194	IL13	IL-13|P600	interleukin 13	protein-coding
109492	chr19	822171	822850	+	0	NA	promoter-TSS (NM_024888)	promoter-TSS (NM_024888)	-555	NM_001270366	79948		NM_024888	ENSG00000129951	PLPPR3	LPPR3|LPR3|PRG-2|PRG2	phospholipid phosphatase related 3	protein-coding
54625	chr12	92608301	92609280	+	0	NA	Intergenic	Intergenic	-94053	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
89749	chr16	89444171	89444450	+	0	NA	non-coding (NR_110931, exon 2 of 3)	non-coding (NR_110931, exon 2 of 3)	13392	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
161925	chr3	46069451	46069750	+	0	NA	intron (NM_001381860, intron 1 of 3)	Tigger2|DNA|TcMar-Tigger	16244	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
47313	chr12	1704121	1704380	+	0	NA	intron (NM_001375365, intron 1 of 7).2	intron (NM_001375365, intron 1 of 7).2	13180	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
159858	chr3	16550521	16551200	+	0	NA	Intergenic	Intergenic	14542	NR_103843	100996597		NR_103843	ENSG00000233570	LINC00690	-	long intergenic non-protein coding RNA 690	ncRNA
83954	chr16	29146321	29147030	+	0	NA	Intergenic	Intergenic	71833	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
235382	chrX	44999351	44999450	+	0	NA	intron (NM_001291416, intron 4 of 28)	LTR10F|LTR|ERV1	126212	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
15995	chr1	151990201	151990400	+	0	NA	intron (NM_002966, intron 1 of 2)	intron (NM_002966, intron 1 of 2)	3559	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
227431	chr9	89961751	89962050	+	0	NA	Intergenic	Intergenic	-7516	NR_109791	101927847		NR_109791		LOC101927847	-	uncharacterized LOC101927847	ncRNA
202624	chr6	158745021	158745380	+	0	NA	intron (NM_001318745, intron 8 of 14)	intron (NM_001318745, intron 8 of 14)	19553	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
194394	chr6	32998421	32998680	+	0	NA	Intergenic	AluJr4|SINE|Alu	11041	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
231271	chr9	130013401	130014380	+	0	NA	intron (NM_001363755, intron 1 of 15)	MSTD|LTR|ERVL-MaLR	29299	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
211347	chr7	104948251	104948550	+	0	NA	Intergenic	Intergenic	-21755	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
180475	chr5	11903921	11904180	+	0	NA	non-coding (NR_109988, exon 1 of 22)	non-coding (NR_109988, exon 1 of 22)	396	NM_001332	1501		NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
201758	chr6	149937701	149939580	+	0	NA	Intergenic	CpG	-3374	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
72201	chr15	30149771	30150650	+	0	NA	Intergenic	Intergenic	-4663	NR_157594	102725021		NR_157593		ARHGAP11B-DT	-	ARHGAP11B divergent transcript	ncRNA
14304	chr1	143803901	143804330	+	0	NA	Intergenic	Intergenic	10515	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
37830	chr11	33179371	33179800	+	0	NA	intron (NR_034027, intron 1 of 3)	MER51A|LTR|ERV1	17928	NR_034027	338739		NR_034027	ENSG00000247151	CSTF3-DT	CSTF3-AS1	CSTF3 divergent transcript	ncRNA
225263	chr9	34373501	34374330	+	0	NA	intron (NM_020702, intron 1 of 1)	intron (NM_020702, intron 1 of 1)	2983	NM_020702	57462		NM_020702	ENSG00000164976	MYORG	IBGC7|KIAA1161|NET37	myogenesis regulating glycosidase (putative)	protein-coding
95502	chr17	36355251	36355350	+	0	NA	Intergenic	L1PA3|LINE|L1	31416	NM_001291462	101060321		NM_001291462	ENSG00000260287	TBC1D3G	TBC1D3C|TBC1D3D	TBC1 domain family member 3G	protein-coding
211223	chr7	102635251	102635580	+	0	NA	Intergenic	Intergenic	7376	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
19361	chr1	173860801	173861530	+	0	NA	Intergenic	AluJr|SINE|Alu	-2083	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
208846	chr7	73701351	73702030	+	0	NA	intron (NM_004603, intron 8 of 9)	intron (NM_004603, intron 8 of 9)	-9627	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
88343	chr16	84546751	84547050	+	0	NA	Intergenic	L2a|LINE|L2	-42241	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
218922	chr8	60816171	60817050	+	0	NA	intron (NM_017780, intron 8 of 37)	intron (NM_017780, intron 8 of 37)	75351	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
99621	chr17	50559901	50561500	+	0	NA	promoter-TSS (NM_001256330)	promoter-TSS (NM_001256330)	-15	NM_198377	8913		NM_018896	ENSG00000006283	CACNA1G	Ca(V)T.1|Cav3.1|NBR13|SCA42|SCA42ND	calcium voltage-gated channel subunit alpha1 G	protein-coding
149645	chr21	33546401	33546980	+	0	NA	intron (NM_001291412, intron 2 of 10)	AluSq2|SINE|Alu	3652	NR_103797	6651		NM_003103	ENSG00000159140	SON	BASS1|C21orf50|DBP-5|NREBP|SON3|TOKIMS	SON DNA and RNA binding protein	protein-coding
56203	chr12	111453671	111454130	+	0	NA	intron (NM_002973, intron 23 of 24)	intron (NM_002973, intron 23 of 24)	19038	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
167072	chr3	126991351	126991450	+	0	NA	exon (NM_032242, exon 2 of 31)	exon (NM_032242, exon 2 of 31)	2806	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
199015	chr6	111096151	111096850	+	0	NA	intron (NM_018593, intron 1 of 5)	intron (NM_018593, intron 1 of 5)	8997	NM_018593	117247		NM_018593	ENSG00000112394	SLC16A10	MCT10|PRO0813|TAT1	solute carrier family 16 member 10	protein-coding
219232	chr8	66919021	66919730	+	0	NA	3' UTR (NM_173518, exon 15 of 15)	3' UTR (NM_173518, exon 15 of 15)	3174	NR_002598	641648		NR_002598	ENSG00000254341	SNORD87	HBII-276|U87	small nucleolar RNA, C/D box 87	snoRNA
57406	chr12	121830021	121830380	+	0	NA	exon (NM_001353345, exon 17 of 17)	exon (NM_001353345, exon 17 of 17)	26191	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
29934	chr10	73372551	73372650	+	0	NA	Intergenic	L1M4c|LINE|L1	-13736	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
148473	chr20	64046221	64047080	+	0	NA	TTS (NM_018419)	TTS (NM_018419)	2989	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
193725	chr6	31202071	31202900	+	0	NA	non-coding (NR_026791, exon 2 of 2)	non-coding (NR_026791, exon 2 of 2)	4725	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
97039	chr17	42319001	42319200	+	0	NA	intron (NM_001369519, intron 21 of 23)	AluSz|SINE|Alu	31044	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
147748	chr20	62409351	62409450	+	0	NA	TTS (NM_080833)	TTS (NM_080833)	-2117	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
212258	chr7	121994671	121995050	+	0	NA	intron (NM_001369395, intron 8 of 28)	intron (NM_001369395, intron 8 of 28)	121699	NM_002851	5803		NM_002851	ENSG00000106278	PTPRZ1	HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan	protein tyrosine phosphatase receptor type Z1	protein-coding
25506	chr10	7233201	7233400	+	0	NA	intron (NM_001029880, intron 9 of 20)	intron (NM_001029880, intron 9 of 20)	-46516	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
36408	chr11	4087571	4087730	+	0	NA	intron (NM_001277961, intron 11 of 11)	intron (NM_001277961, intron 11 of 11)	-7035	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
205914	chr7	25568901	25569250	+	0	NA	Intergenic	Intergenic	94065	NR_157819	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
234670	chrX	20212321	20212900	+	0	NA	intron (NM_004586, intron 2 of 21)	AluJr|SINE|Alu	54299	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
28523	chr10	50414801	50415500	+	0	NA	intron (NM_147156, intron 6 of 10)	L3|LINE|CR1	-163634	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
87111	chr16	68644971	68646130	+	0	NA	intron (NM_001317196, intron 1 of 14)	CpG	240	NM_001317195	1001		NM_001793	ENSG00000062038	CDH3	CDHP|HJMD|PCAD	cadherin 3	protein-coding
138658	chr2	212863271	212863430	+	0	NA	Intergenic	L1M3f|LINE|L1	-62907	NR_039935	100616267		NR_039935	ENSG00000266354	MIR4776-1	mir-4776-1	microRNA 4776-1	ncRNA
180562	chr5	14700871	14701580	+	0	NA	Intergenic	LTR78|LTR|ERV1	-11469	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
131455	chr2	96337651	96338150	+	0	NA	intron (NM_001281712, intron 1 of 16)	L2|LINE|L2	2134	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
146158	chr20	48721571	48721730	+	0	NA	intron (NM_020820, intron 5 of 39)	L2a|LINE|L2	106349	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
202723	chr6	158872251	158872900	+	0	NA	intron (NR_160976, intron 1 of 2)	AluSp|SINE|Alu	2546	NR_160976	100130967		NM_001195032	ENSG00000203711	LINC02901	C6orf99	long intergenic non-protein coding RNA 2901	ncRNA
134176	chr2	134275271	134275650	+	0	NA	intron (NM_001371457, intron 3 of 16)	intron (NM_001371457, intron 3 of 16)	21388	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
36160	chr11	3148051	3148350	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	17110	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
100645	chr17	63690751	63691700	+	0	NA	exon (NM_203351, exon 14 of 17)	exon (NM_203351, exon 14 of 17)	8900	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
179109	chr4	168711271	168711430	+	0	NA	intron (NM_001166108, intron 9 of 21)	intron (NM_001166108, intron 9 of 21)	79772	NM_001166109	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
135212	chr2	159144801	159146000	+	0	NA	intron (NM_001350062, intron 5 of 23)	MIRc|SINE|MIR	-41435	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
3332	chr1	15426851	15427150	+	0	NA	intron (NM_024329, intron 2 of 3)	intron (NM_024329, intron 2 of 3)	-11443	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
54272	chr12	89017121	89017480	+	0	NA	intron (NR_038385, intron 1 of 2)	intron (NR_038385, intron 1 of 2)	2392	NR_038385	728084		NR_038385	ENSG00000246363	LINC02458	-	long intergenic non-protein coding RNA 2458	ncRNA
118029	chr19	34215601	34216630	+	0	NA	intron (NR_169262, intron 6 of 7)	L1MD3|LINE|L1	-38439	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
87818	chr16	75615301	75615750	+	0	NA	intron (NM_001324446, intron 6 of 10)	MER30|DNA|hAT-Charlie	7756	NM_001324452	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
135983	chr2	172118271	172118430	+	0	NA	Intergenic	AluSg|SINE|Alu	15344	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
192188	chr6	17691251	17691550	+	0	NA	intron (NM_001278209, intron 1 of 22)	intron (NM_001278209, intron 1 of 22)	-14730	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
13880	chr1	119001971	119002130	+	0	NA	promoter-TSS (NR_135034)	promoter-TSS (NR_135034)	-645	NR_135035	105378933		NR_135034	ENSG00000226172	LOC105378933	-	uncharacterized LOC105378933	ncRNA
236354	chrX	70437571	70438130	+	0	NA	Intergenic	L2a|LINE|L2	-6985	NM_021120	1741		NM_020730	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|PPP1R82|SAP102|XLID90|XLMR	discs large MAGUK scaffold protein 3	protein-coding
36195	chr11	3411001	3411400	+	0	NA	Intergenic	AluJb|SINE|Alu	-19285	NR_044999	10821		NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
138908	chr2	218068571	218069930	+	0	NA	non-coding (NR_034176, exon 4 of 14)	non-coding (NR_034176, exon 4 of 14)	235	NM_198483	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
77360	chr15	82749801	82751250	+	0	NA	promoter-TSS (NR_110099)	promoter-TSS (NR_110099)	-39	NR_110098	100505616		NR_110096	ENSG00000250988	SNHG21	FSD2-AS1|SCARNA15HG	small nucleolar RNA host gene 21	ncRNA
73646	chr15	44685721	44686400	+	0	NA	Intergenic	L1PA7|LINE|L1	-9172	NM_001145112	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
219098	chr8	65899021	65899330	+	0	NA	Intergenic	AluJr4|SINE|Alu	-57111	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
182497	chr5	64635021	64635350	+	0	NA	Intergenic	Intergenic	-55318	NM_001164442	100132916		NM_001164442	ENSG00000145642	SHISAL2B	FAM159B	shisa like 2B	protein-coding
209864	chr7	90401951	90402400	+	0	NA	Intergenic	Intergenic	-1286	NM_012129	9069		NM_012129	ENSG00000157224	CLDN12	-	claudin 12	protein-coding
95706	chr17	38509251	38509850	+	0	NA	intron (NM_001199417, intron 23 of 23).2	intron (NM_001199417, intron 23 of 23).2	81086	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
107672	chr18	49172071	49172430	+	0	NA	intron (NM_017653, intron 13 of 16)	L1ME1|LINE|L1	-122482	NR_039898	100616420		NR_039898	ENSG00000263849	MIR4744	-	microRNA 4744	ncRNA
50263	chr12	46263951	46264330	+	0	NA	intron (NM_001278387, intron 1 of 17)	intron (NM_001278387, intron 1 of 17)	2376	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
89967	chr16	89815071	89815530	+	0	NA	intron (NM_001018112, intron 2 of 10)	AluSx1|SINE|Alu	1347	NM_001286167	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
159970	chr3	17742001	17743730	+	0	NA	promoter-TSS (NM_001349086)	promoter-TSS (NM_001349086)	-79	NR_135536	105376975		NR_135536	ENSG00000286352	LOC105376975	-	uncharacterized LOC105376975	ncRNA
98723	chr17	48014151	48014950	+	0	NA	Intergenic	Intergenic	-18332	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
227223	chr9	88921971	88922930	+	0	NA	Intergenic	Intergenic	-68413	NM_001001938	1903		NM_005226	ENSG00000213694	S1PR3	C9orf108|C9orf47|EDG-3|EDG3|LPB3|S1P3|bA791O21.3	sphingosine-1-phosphate receptor 3	protein-coding
211431	chr7	105062871	105063530	+	0	NA	intron (NM_182931, intron 4 of 26)	intron (NM_182931, intron 4 of 26)	48995	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
126477	chr2	28378971	28379500	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-13623	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
227347	chr9	89468401	89469400	+	0	NA	intron (NM_001371194, intron 1 of 15)	MER135|DNA|DNA	10990	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
69140	chr14	92547421	92548430	+	0	NA	intron (NM_024832, intron 1 of 9)	AluSx|SINE|Alu	-28309	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
181564	chr5	43143671	43144150	+	0	NA	intron (NM_003432, intron 4 of 7)	AluY|SINE|Alu	22345	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
25348	chr10	6274551	6275680	+	0	NA	Intergenic	Intergenic	-51429	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
123419	chr19	54095801	54097350	+	0	NA	intron (NM_206818, intron 5 of 5).10	(CTCT)n|Simple_repeat|Simple_repeat	6111	NM_001282350	126014		NM_130771	ENSG00000170909	OSCAR	PIGR3|PIgR-3	osteoclast associated Ig-like receptor	protein-coding
176053	chr4	82421621	82422750	+	0	NA	TTS (NM_001207000)	TTS (NM_001207000)	8040	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
185899	chr5	132775101	132775300	+	0	NA	intron (NM_001098813, intron 1 of 9)	intron (NM_001098813, intron 1 of 9)	2039	NM_015146	23176		NM_015146	ENSG00000164402	SEPTIN8	SEP2|SEPT8|Septin-8	septin 8	protein-coding
77395	chr15	83066471	83067780	+	0	NA	promoter-TSS (NR_039740)	promoter-TSS (NR_039740)	127	NM_001011885	53339		NM_025238	ENSG00000064726	BTBD1	C15orf1|NS5ATP8	BTB domain containing 1	protein-coding
91920	chr17	7319171	7319330	+	0	NA	intron (NM_032442, intron 21 of 28)	intron (NM_032442, intron 21 of 28)	-3890	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
27068	chr10	27155001	27155600	+	0	NA	promoter-TSS (NM_001320756)	promoter-TSS (NM_001320756)	-52	NM_001372030	84930		NM_032844	ENSG00000120539	MASTL	GREATWALL|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase like	protein-coding
19003	chr1	169571521	169571800	+	0	NA	intron (NM_000130, intron 3 of 24)	MER58A|DNA|hAT-Charlie	14821	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
195051	chr6	35494121	35494880	+	0	NA	intron (NM_003214, intron 1 of 12)	intron (NM_003214, intron 1 of 12)	2579	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
116005	chr19	17120521	17120980	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	28515	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
62367	chr13	99223351	99224580	+	0	NA	intron (NR_026644, intron 1 of 8)	L1MD|LINE|L1	23111	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
149971	chr21	36602821	36603480	+	0	NA	Intergenic	Intergenic	-26581	NM_001146077	23562		NM_012130	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
84500	chr16	30497351	30497450	+	0	NA	intron (NM_002209, intron 15 of 30)	AluJb|SINE|Alu	-6519	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
75040	chr15	64151271	64152780	+	0	NA	intron (NR_073534, intron 1 of 6)	CpG	294	NM_024798	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
239472	chrY	56731871	56732230	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-222205	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
162227	chr3	47073351	47073650	+	0	NA	intron (NM_001349370, intron 11 of 19)	intron (NM_001349370, intron 11 of 19)	61958	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
160045	chr3	18440351	18441000	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	-1939	NM_001131010	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
213376	chr7	135950551	135951250	+	0	NA	intron (NM_001128619, intron 2 of 3)	MIRb|SINE|MIR	26459	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
44698	chr11	111528671	111529230	+	0	NA	intron (NM_207430, intron 4 of 6)	MIR|SINE|MIR	-11330	NM_001318799	143903		NM_178834	ENSG00000204381	LAYN	-	layilin	protein-coding
26031	chr10	12352871	12353050	+	0	NA	intron (NM_153498, intron 1 of 10)	AluY|SINE|Alu	3413	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
62678	chr13	102623051	102623350	+	0	NA	intron (NR_160411, intron 6 of 28)	intron (NR_160411, intron 6 of 28)	26214	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
115606	chr19	16067571	16067930	+	0	NA	5' UTR (NM_001367836, exon 1 of 9)	5' UTR (NM_001367836, exon 1 of 9)	212	NM_001367836	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
25702	chr10	8981371	8981530	+	0	NA	Intergenic	Intergenic	83461	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
8045	chr1	38559151	38560280	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	84519	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
98881	chr17	48561201	48561400	+	0	NA	intron (NM_001384750, intron 1 of 3)	intron (NM_001384750, intron 1 of 3)	13148	NM_002146	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
49260	chr12	19471301	19471500	+	0	NA	intron (NM_153207, intron 2 of 7)	AluJb|SINE|Alu	30801	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
215100	chr7	155207671	155207830	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-90022	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
78936	chr15	101265071	101265430	+	0	NA	Intergenic	Intergenic	12235	NM_018445	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
229882	chr9	126500921	126501680	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-90796	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
85528	chr16	53052701	53053280	+	0	NA	promoter-TSS (NR_136518)	promoter-TSS (NR_136518)	-117	NR_147075	105371267		NM_001396020	ENSG00000277639	CHD9NB	PR-lncRNA-1	CHD9 neighbor	protein-coding
162343	chr3	47788601	47789900	+	0	NA	Intergenic	Intergenic	-7357	NM_003074	6599		NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|HYC5|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
204168	chr7	2417821	2418880	+	0	NA	intron (NM_018641, intron 1 of 1)	intron (NM_018641, intron 1 of 1)	14739	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
180766	chr5	32159751	32160250	+	0	NA	intron (NM_022130, intron 1 of 3)	intron (NM_022130, intron 1 of 3)	14319	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
92045	chr17	7497271	7497830	+	0	NA	intron (NM_000937, intron 6 of 29)	intron (NM_000937, intron 6 of 29)	13184	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
20333	chr1	197769451	197769550	+	0	NA	intron (NM_001300858, intron 2 of 15)	intron (NM_001300858, intron 2 of 15)	5980	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
115956	chr19	16873871	16874030	+	0	NA	intron (NM_001297595, intron 14 of 18)	MIRb|SINE|MIR	10676	NM_001297597	23309		NM_015260	ENSG00000127511	SIN3B	-	SIN3 transcription regulator family member B	protein-coding
182511	chr5	65076321	65076780	+	0	NA	Intergenic	Intergenic	307620	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
98188	chr17	46112421	46113150	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSp|SINE|Alu	79997	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
164523	chr3	63909071	63909750	+	0	NA	intron (NM_001177387, intron 1 of 12)	intron (NM_001177387, intron 1 of 12)	2362	NR_148359	100861563		NR_148359	ENSG00000280620	SCAANT1	ATXN7-AS1	SCA7/ATXN7 antisense RNA 1	ncRNA
49295	chr12	21248701	21249050	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	86042	NM_021094	6579		NM_005075	ENSG00000084453	SLCO1A2	OATP|OATP-A|OATP1A2|SLC21A3	solute carrier organic anion transporter family member 1A2	protein-coding
187442	chr5	142108221	142109800	+	0	NA	exon (NM_030571, exon 1 of 8)	exon (NM_030571, exon 1 of 8)	231	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
30468	chr10	79149621	79150480	+	0	NA	intron (NM_020338, intron 3 of 24)	intron (NM_020338, intron 3 of 24)	81084	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
182836	chr5	69265921	69266180	+	0	NA	intron (NR_136690, intron 7 of 10)	AluJb|SINE|Alu	31164	NR_136690	1022		NM_001799	ENSG00000134058	CDK7	CAK|CAK1|CDKN7|HCAK|MO15|STK1|p39MO15	cyclin dependent kinase 7	protein-coding
100971	chr17	64517501	64518100	+	0	NA	intron (NR_133644, intron 5 of 19)	AluJr|SINE|Alu	10823	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
206889	chr7	37689671	37689830	+	0	NA	intron (NM_001381946, intron 2 of 2)	L1MEj|LINE|L1	5984	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
208391	chr7	66685871	66686550	+	0	NA	TTS (NR_104676)	TTS (NR_104676)	4044	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
110518	chr19	2070821	2071080	+	0	NA	TTS (NM_130807)	TTS (NM_130807)	-19706	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
222392	chr8	133951071	133951500	+	0	NA	Intergenic	L1MB3|LINE|L1	64789	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
150598	chr21	43355921	43356230	+	0	NA	Intergenic	Intergenic	6274	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
136887	chr2	189303551	189303850	+	0	NA	Intergenic	MER57A1|LTR|ERV1	-123939	NM_000393	1290		NM_000393	ENSG00000204262	COL5A2	EDSC|EDSCL2	collagen type V alpha 2 chain	protein-coding
30100	chr10	73959821	73960180	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-37223	NR_160938	414236		NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 putative open reading frame 55	ncRNA
23490	chr1	228641251	228642150	+	0	NA	Intergenic	Intergenic	-2947	NR_037962	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
222143	chr8	132552471	132552630	+	0	NA	Intergenic	Intergenic	8929	NR_026684	93668		NR_026684	ENSG00000253521	HPYR1	HPRG1|LINC00027|NCRNA00027	Helicobacter pylori responsive 1	ncRNA
4664	chr1	22419121	22419580	+	0	NA	Intergenic	MIRb|SINE|MIR	-32501	NM_014870	9923		NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
234808	chrX	24050471	24050830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4306	NM_001415	1968		NM_001415	ENSG00000130741	EIF2S3	EIF2|EIF2G|EIF2gamma|MEHMO|MRXSBRK|eIF-2gA|eIF2gX	eukaryotic translation initiation factor 2 subunit gamma	protein-coding
162049	chr3	46778101	46778300	+	0	NA	Intergenic	L1MA9|LINE|L1	-21345	NR_160552	100288960		NR_160552	ENSG00000293417	PRSS43P	PRSS43|TESSP3	serine protease 43, pseudogene	pseudo
152711	chr22	21644771	21645150	+	0	NA	TTS (NM_022044)	TTS (NM_022044)	2658	NM_022044	23753		NM_022044	ENSG00000128228	SDF2L1	-	stromal cell derived factor 2 like 1	protein-coding
112791	chr19	7481721	7482250	+	0	NA	intron (NM_080662, intron 3 of 4)	intron (NM_080662, intron 3 of 4)	7050	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
136506	chr2	177239501	177240380	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	16070	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
204196	chr7	2498151	2499380	+	0	NA	Intergenic	Intergenic	-13764	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
96077	chr17	39603701	39603900	+	0	NA	TTS (NM_006160)	TTS (NM_006160)	4120	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
180798	chr5	32283671	32284430	+	0	NA	intron (NM_001294344, intron 1 of 13)	AluJb|SINE|Alu	28889	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
104690	chr17	81522721	81522980	+	0	NA	Intergenic	Intergenic	-5527	NM_001077182	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
7087	chr1	32063301	32063880	+	0	NA	Intergenic	Intergenic	-8441	NM_001319677	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
12011	chr1	95872151	95872250	+	0	NA	Intergenic	Intergenic	-119868	NR_125991	102723661		NR_125991	ENSG00000237435	LINC02790	-	long intergenic non-protein coding RNA 2790	ncRNA
29770	chr10	72258571	72258950	+	0	NA	Intergenic	Intergenic	-15164	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
162192	chr3	47002521	47003230	+	0	NA	intron (NM_001365116, intron 32 of 52)	intron (NM_001365116, intron 32 of 52)	-8667	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
1908	chr1	6459521	6461230	+	0	NA	TTS (NM_148965)	TTS (NM_148965)	5798	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
23465	chr1	228608371	228609700	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	1351	NR_023364	100169753		NR_023364	ENSG00000201588	RNA5S2	RN5S2	RNA, 5S ribosomal 2	rRNA
151663	chr22	17086391	17086600	+	0	NA	intron (NM_014339, intron 1 of 12)	intron (NM_014339, intron 1 of 12)	1495	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
181105	chr5	36951921	36952180	+	0	NA	intron (NM_133433, intron 1 of 46)	(TG)n|Simple_repeat|Simple_repeat	75281	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
68796	chr14	91232951	91233800	+	0	NA	3' UTR (NM_001348437, exon 3 of 3)	3' UTR (NM_001348437, exon 3 of 3)	11329	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
112460	chr19	6385471	6386130	+	0	NA	intron (NM_002096, intron 5 of 12)	intron (NM_002096, intron 5 of 12)	3903	NR_106945	102465533		NR_106945	ENSG00000274390	MIR6885	hsa-mir-6885	microRNA 6885	ncRNA
150566	chr21	43106671	43108190	+	0	NA	intron (NM_001025204, intron 1 of 8).2	CpG	140	NM_006758	7307		NM_006758	ENSG00000160201	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
47126	chr12	719101	720100	+	0	NA	Intergenic	LTR36|LTR|ERV1	-32979	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
142710	chr20	8400051	8400230	+	0	NA	intron (NM_015192, intron 3 of 31)	intron (NM_015192, intron 3 of 31)	151436	NR_046809	100874337		NR_046809	ENSG00000225479	PLCB1-IT1	-	PLCB1 intronic transcript 1	ncRNA
97487	chr17	43840851	43840950	+	0	NA	Intergenic	Intergenic	-6276	NM_001168322	146894		NM_145273	ENSG00000161649	CD300LG	CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4	CD300 molecule like family member g	protein-coding
100308	chr17	59824501	59825100	+	0	NA	intron (NM_030938, intron 10 of 11)	AluSx1|SINE|Alu	-16466	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
176359	chr4	88465851	88466350	+	0	NA	intron (NM_016323, intron 6 of 22)	AluJb|SINE|Alu	8981	NM_016323	51191		NM_016323	ENSG00000138646	HERC5	CEB1|CEBP1	HECT and RLD domain containing E3 ubiquitin protein ligase 5	protein-coding
144263	chr20	34548171	34548530	+	0	NA	intron (NM_181509, intron 1 of 4)	intron (NM_181509, intron 1 of 4)	1506	NM_181509	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
101291	chr17	66407351	66407470	+	0	NA	intron (NR_110822, intron 3 of 3)	MSTA|LTR|ERVL-MaLR	9444	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
37144	chr11	13465721	13466300	+	0	NA	Intergenic	Intergenic	-2713	NM_001297741	84280		NM_032320	ENSG00000148925	BTBD10	GMRP-1|GMRP1	BTB domain containing 10	protein-coding
219066	chr8	65812051	65812150	+	0	NA	intron (NM_001242318, intron 1 of 12)	AluJb|SINE|Alu	-23043	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
183984	chr5	88883001	88883600	+	0	NA	promoter-TSS (NM_002397)	promoter-TSS (NM_002397)	-30	NR_136219	101929423		NR_104031	ENSG00000248309	MEF2C-AS1	-	MEF2C antisense RNA 1	ncRNA
167147	chr3	127971071	127971230	+	0	NA	intron (NM_207335, intron 5 of 5)	intron (NM_207335, intron 5 of 5)	55918	NM_001370224	166348		NM_207335	ENSG00000187715	KBTBD12	KLHDC6	kelch repeat and BTB domain containing 12	protein-coding
53849	chr12	69639351	69639750	+	0	NA	Intergenic	Intergenic	-28643	NM_201550	376132		NM_201550	ENSG00000198812	LRRC10	HRLRRP|LRRC10A	leucine rich repeat containing 10	protein-coding
170121	chr3	183252821	183253420	+	0	NA	promoter-TSS (NM_032047)	promoter-TSS (NM_032047)	-133	NM_032047	84002		NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
685	chr1	1385871	1386530	+	0	NA	non-coding (NR_135154, exon 13 of 13)	non-coding (NR_135154, exon 13 of 13)	-10993	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
114822	chr19	13816201	13816600	+	0	NA	intron (NM_001367834, intron 7 of 13)	AluSq2|SINE|Alu	19959	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
19669	chr1	180693171	180693330	+	0	NA	intron (NR_137330, intron 2 of 12)	intron (NR_137330, intron 2 of 12)	61228	NR_137330	9213		NM_004736	ENSG00000143324	XPR1	IBGC6|SLC53A1|SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
16028	chr1	152212821	152215250	+	0	NA	exon (NM_001009931, exon 3 of 3)	exon (NM_001009931, exon 3 of 3)	10158	NM_001009931	388697		NM_001009931	ENSG00000197915	HRNR	FLG3|S100A16|S100a18	hornerin	protein-coding
78307	chr15	90924321	90924580	+	0	NA	Intergenic	Intergenic	-5730	NM_001039675	55898		NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|OOHE|SMAP-1|SMAP1|UNC-45A	unc-45 myosin chaperone A	protein-coding
239104	chrY	11156071	11156230	+	0	NA	Intergenic	Intergenic	1245352	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
166757	chr3	122102401	122102600	+	0	NA	intron (NM_001206924, intron 2 of 5)	intron (NM_001206924, intron 2 of 5)	24651	NM_176892	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
218407	chr8	47363271	47363500	+	0	NA	intron (NR_104581, intron 5 of 16)	AluY|SINE|Alu	102447	NM_001080394	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
186973	chr5	139686951	139687450	+	0	NA	Intergenic	Intergenic	11757	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
99329	chr17	49841771	49842350	+	0	NA	intron (NM_170685, intron 2 of 4)	AluY|SINE|Alu	-3826	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
87952	chr16	79599601	79601680	+	0	NA	promoter-TSS (NM_005360)	promoter-TSS (NM_005360)	97	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
65485	chr14	51870601	51871080	+	0	NA	intron (NM_001243774, intron 1 of 2)	intron (NM_001243774, intron 1 of 2)	10228	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
104946	chr17	81941001	81941200	+	0	NA	exon (NM_001145113, exon 3 of 3)	exon (NM_001145113, exon 3 of 3)	-3772	NM_001282280	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
228075	chr9	96327601	96328030	+	0	NA	intron (NM_001286990, intron 6 of 8)	AluJr|SINE|Alu	-25639	NM_000197	3293		NM_000197	ENSG00000130948	HSD17B3	EDH17B3|SDR12C2	hydroxysteroid 17-beta dehydrogenase 3	protein-coding
20654	chr1	200130801	200131000	+	0	NA	intron (NM_205860, intron 7 of 7)	intron (NM_205860, intron 7 of 7)	88075	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
66510	chr14	61714851	61715230	+	0	NA	TTS (NR_144368)	TTS (NR_144368)	17418	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
142567	chr20	5268171	5268730	+	0	NA	Intergenic	Intergenic	48504	NM_144773	128674		NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
141494	chr2	241108221	241109680	+	0	NA	intron (NM_001252120, intron 16 of 18)	intron (NM_001252120, intron 16 of 18)	-6618	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
190874	chr6	2221701	2222800	+	0	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	23355	NM_001500	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
122993	chr19	50837371	50837730	+	0	NA	intron (NR_131205, intron 2 of 2)	MIR|SINE|MIR	-6027	NM_017509	55554		NM_017509	ENSG00000174562	KLK15	ACO|HSRNASPH	kallikrein related peptidase 15	protein-coding
151764	chr22	17985201	17985600	+	0	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-4439	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
149308	chr21	29000101	29000300	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7323	NM_001320766	26046		NM_015565	ENSG00000198862	LTN1	C21orf10|C21orf98|RNF160|ZNF294	listerin E3 ubiquitin protein ligase 1	protein-coding
158216	chr22	50265401	50266080	+	0	NA	intron (NM_002751, intron 9 of 11)	intron (NM_002751, intron 9 of 11)	-3930	NM_001303252	6300		NM_002969	ENSG00000188130	MAPK12	ERK-6|ERK3|ERK6|MAPK 12|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
118296	chr19	35352471	35353500	+	0	NA	TTS (NM_005303)	TTS (NM_005303)	1443	NM_005303	2864		NM_005303	ENSG00000126266	FFAR1	FFA1R|GPCR40|GPR40	free fatty acid receptor 1	protein-coding
56522	chr12	116609851	116610030	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	50559	NM_001085481	643246		NM_001085481	ENSG00000258102	MAP1LC3B2	ATG8G	microtubule associated protein 1 light chain 3 beta 2	protein-coding
143474	chr20	31059071	31059230	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-198514	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
192453	chr6	24907801	24908600	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	2534	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
12640	chr1	109216271	109216850	+	0	NA	non-coding (NR_034072, exon 2 of 2)	non-coding (NR_034072, exon 2 of 2)	2642	NM_006513	6301		NM_006513	ENSG00000031698	SARS1	NEDMAS|SARS|SERRS|SERS	seryl-tRNA synthetase 1	protein-coding
119619	chr19	40785151	40785450	+	0	NA	intron (NM_016154, intron 5 of 7)	AluJo|SINE|Alu	7053	NM_016154	53916		NM_016154	ENSG00000167578	RAB4B	-	RAB4B, member RAS oncogene family	protein-coding
159699	chr3	15600871	15602900	+	0	NA	promoter-TSS (NM_012260)	promoter-TSS (NM_012260)	-84	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
74981	chr15	63892351	63893800	+	0	NA	Intergenic	Intergenic	-22056	NR_029944	494334		NR_029944	ENSG00000199156	MIR422A	MIRN422A	microRNA 422a	ncRNA
232696	chr9	136536951	136537680	+	0	NA	intron (NM_017617, intron 2 of 33)	L1MB5|LINE|L1	8733	NM_017617	4851		NM_017617	ENSG00000148400	NOTCH1	AOS5|AOVD1|TAN1|hN1	notch receptor 1	protein-coding
49486	chr12	25240951	25242050	+	0	NA	intron (NM_033360, intron 2 of 5)	intron (NM_033360, intron 2 of 5)	9429	NM_033360	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
81195	chr16	4486301	4486950	+	0	NA	intron (NM_001127204, intron 2 of 6).2	intron (NM_001127204, intron 2 of 6).2	-9194	NM_001286270	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
99127	chr17	49228851	49229400	+	0	NA	intron (NM_001143804, intron 1 of 2)	intron (NM_001143804, intron 1 of 2)	1641	NM_001143804	162466		NM_178500	ENSG00000173868	PHOSPHO1	-	phosphoethanolamine/phosphocholine phosphatase 1	protein-coding
94836	chr17	31469971	31470480	+	0	NA	intron (NM_032932, intron 3 of 14)	intron (NM_032932, intron 3 of 14)	-17883	NM_001303542	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
132190	chr2	101883801	101884130	+	0	NA	intron (NM_001384572, intron 25 of 29)	intron (NM_001384572, intron 25 of 29)	-99500	NR_103791	100506328		NR_103791		LINC01127	-	long intergenic non-protein coding RNA 1127	ncRNA
61947	chr13	78660151	78660800	+	0	NA	Intergenic	AluSz|SINE|Alu	-1320	NM_024546	79596		NM_024546	ENSG00000152193	OBI1	C13orf7|RNF219	ORC ubiquitin ligase 1	protein-coding
20215	chr1	193132471	193132980	+	0	NA	intron (NM_024529, intron 3 of 16)	intron (NM_024529, intron 3 of 16)	-3778	NR_031691	100302163		NR_031691	ENSG00000221680	MIR1278	MIRN1278|hsa-mir-1278|mir-1278	microRNA 1278	ncRNA
67894	chr14	74493001	74494450	+	0	NA	promoter-TSS (NM_194279)	promoter-TSS (NM_194279)	5	NM_001272007	122961		NM_194279	ENSG00000165898	ISCA2	HBLD1|ISA2|MMDS4|c14_5557	iron-sulfur cluster assembly 2	protein-coding
78109	chr15	90292471	90292730	+	0	NA	Intergenic	Intergenic	-26841	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
38976	chr11	47565121	47566180	+	0	NA	promoter-TSS (NM_001376417)	promoter-TSS (NM_001376417)	51	NM_175732	114971		NM_175732	ENSG00000110536	PTPMT1	DUSP23|MOSP|PLIP|PNAS-129	protein tyrosine phosphatase mitochondrial 1	protein-coding
134238	chr2	134960871	134961230	+	0	NA	Intergenic	Intergenic	42228	NM_001320749	905		NM_001241	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
146483	chr20	49812251	49813800	+	0	NA	intron (NR_048540, intron 1 of 11)	CpG	197	NR_048538	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
47058	chr12	549701	549900	+	0	NA	exon (NM_173593, exon 10 of 20)	exon (NM_173593, exon 10 of 20)	36686	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
151286	chr21	45499471	45499630	+	0	NA	intron (NM_001379500, intron 32 of 41)	intron (NM_001379500, intron 32 of 41)	21284	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
81160	chr16	4421371	4421680	+	0	NA	Intergenic	AluSx|SINE|Alu	-4280	NM_001286516	9093		NM_005147	ENSG00000103423	DNAJA3	HCA57|TID1|Tid1-L|Tid1-S|hTID-1	DnaJ heat shock protein family (Hsp40) member A3	protein-coding
147767	chr20	62501701	62503080	+	0	NA	Intergenic	Intergenic	-26395	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
98206	chr17	46133401	46133600	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	59282	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
157497	chr22	45326001	45326280	+	0	NA	intron (NM_001349915, intron 3 of 7)	intron (NM_001349915, intron 3 of 7)	7697	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
236211	chrX	65690251	65691950	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	23446	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
133758	chr2	127615701	127616100	+	0	NA	intron (NM_001080527, intron 25 of 46)	HERVK3-int|LTR|ERVK	-29964	NM_001161415	2840		NM_005291	ENSG00000144230	GPR17	-	G protein-coupled receptor 17	protein-coding
117417	chr19	19632001	19632330	+	0	NA	intron (NM_001288998, intron 18 of 19)	AluSp|SINE|Alu	-3945	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
95223	chr17	35256071	35256230	+	0	NA	intron (NM_144975, intron 1 of 4)	AluSq|SINE|Alu	13078	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
81408	chr16	8619501	8619900	+	0	NA	Intergenic	Intergenic	-1998	NM_024109	79091		NM_024109	ENSG00000067365	METTL22	C16orf68	methyltransferase 22, Kin17 lysine	protein-coding
174129	chr4	36224401	36224600	+	0	NA	intron (NR_146894, intron 2 of 32)	intron (NR_146894, intron 2 of 32)	19439	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
103271	chr17	77741201	77741400	+	0	NA	Intergenic	Intergenic	-12741	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
213349	chr7	135562521	135562980	+	0	NA	intron (NM_001329434, intron 1 of 42)	AluSc|SINE|Alu	4833	NM_015135	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
144686	chr20	36440721	36441100	+	0	NA	intron (NM_001365621, intron 5 of 12)	intron (NM_001365621, intron 5 of 12)	-20558	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
235639	chrX	48479301	48479700	+	0	NA	intron (NM_001282157, intron 2 of 8)	L2a|LINE|L2	3301	NM_177439	24140		NM_012280	ENSG00000068438	FTSJ1	CDLIV|JM23|MRX44|MRX9|SPB1|TRMT7|XLID9	FtsJ RNA 2'-O-methyltransferase 1	protein-coding
105637	chr18	873621	874300	+	0	NA	Intergenic	AluSq|SINE|Alu	-30911	NM_001099733	116		NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
74792	chr15	63288521	63288980	+	0	NA	intron (NM_031301, intron 4 of 5)	intron (NM_031301, intron 4 of 5)	11145	NM_031301	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
5931	chr1	26862501	26863180	+	0	NA	promoter-TSS (NM_006142)	promoter-TSS (NM_006142)	-309	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
157836	chr22	47918471	47918830	+	0	NA	Intergenic	Intergenic	286976	NR_122046	284930		NR_122046	ENSG00000224271	EPIC1	Lnc-EPIC1	epigenetically induced MYC interacting lncRNA 1	ncRNA
58549	chr12	132283071	132283680	+	0	NA	intron (NM_001122636, intron 2 of 10)	intron (NM_001122636, intron 2 of 10)	7984	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
29250	chr10	69105921	69106180	+	0	NA	Intergenic	AluSx1|SINE|Alu	17947	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
16156	chr1	153709101	153709900	+	0	NA	Intergenic	AluJr|SINE|Alu	-18550	NM_001324475	65123		NM_023015	ENSG00000143624	INTS3	C1orf193|C1orf60|INT3|SOSS-A|SOSSA	integrator complex subunit 3	protein-coding
70081	chr14	100159101	100160480	+	0	NA	promoter-TSS (NM_206918)	promoter-TSS (NM_206918)	-145	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
226553	chr9	72359801	72360030	+	0	NA	intron (NM_001278243, intron 4 of 6)	intron (NM_001278243, intron 4 of 6)	4641	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
229750	chr9	125173271	125173630	+	0	NA	intron (NM_001123369, intron 1 of 5)	AluSz6|SINE|Alu	16353	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
141006	chr2	238143301	238143830	+	0	NA	intron (NM_198582, intron 3 of 7)	intron (NM_198582, intron 3 of 7)	4897	NM_198582	377007		NM_198582	ENSG00000168427	KLHL30	-	kelch like family member 30	protein-coding
184515	chr5	100906471	100906830	+	0	NA	Intergenic	L1MC1|LINE|L1	-3368	NM_175052	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
207090	chr7	39981001	39981200	+	0	NA	intron (NM_003718, intron 1 of 13)	AluJb|SINE|Alu	30740	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
1434	chr1	2592771	2593850	+	0	NA	intron (NM_033467, intron 19 of 23)	intron (NM_033467, intron 19 of 23)	6533	NM_001195741	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
76383	chr15	74615401	74616100	+	0	NA	promoter-TSS (NM_001130028)	promoter-TSS (NM_001130028)	-86	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
117591	chr19	21761721	21761850	+	0	NA	intron (NM_173531, intron 2 of 4)	MER41-int|LTR|ERV1	5794	NM_001351669	163227		NM_173531	ENSG00000197020	ZNF100	-	zinc finger protein 100	protein-coding
157511	chr22	45335851	45336380	+	0	NA	intron (NR_146323, intron 10 of 11)	intron (NR_146323, intron 10 of 11)	17672	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
191428	chr6	10429721	10430080	+	0	NA	non-coding (NR_027793, exon 3 of 3)	non-coding (NR_027793, exon 3 of 3)	-4429	NR_132993	106660610		NR_132993	ENSG00000229401	MIR5689HG	-	MIR5689 host gene	ncRNA
198625	chr6	107776401	107776800	+	0	NA	intron (NM_198081, intron 1 of 7)	L1M4|LINE|L1	-44450	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
43306	chr11	76211921	76212330	+	0	NA	Intergenic	Intergenic	-5623	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
152442	chr22	20595421	20595680	+	0	NA	Intergenic	L1MCb|LINE|L1	87503	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
19178	chr1	171923071	171923230	+	0	NA	intron (NM_001350204, intron 2 of 20)	L1MB8|LINE|L1	58958	NR_046845	100874284		NR_046845	ENSG00000233540	DNM3-IT1	-	DNM3 intronic transcript 1	ncRNA
638	chr1	1341601	1342030	+	0	NA	intron (NM_004421, intron 4 of 14)	intron (NM_004421, intron 4 of 14)	-2107	NR_106866	102466740		NR_106866	ENSG00000284372	MIR6808	hsa-mir-6808	microRNA 6808	ncRNA
24832	chr10	350521	350730	+	0	NA	intron (NM_014974, intron 24 of 36)	intron (NM_014974, intron 24 of 36)	170631	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
203455	chr7	381551	382250	+	0	NA	non-coding (NR_033960, exon 3 of 3)	non-coding (NR_033960, exon 3 of 3)	2475	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
51816	chr12	53439871	53440030	+	0	NA	Intergenic	L1PA10|LINE|L1	-1699	NM_001005354	54458		NM_018457	ENSG00000205352	PRR13	TXR1	proline rich 13	protein-coding
13705	chr1	116762801	116764000	+	0	NA	intron (NM_001767, intron 3 of 4)	intron (NM_001767, intron 3 of 4)	8970	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
147510	chr20	59182521	59183250	+	0	NA	intron (NM_178457, intron 1 of 5)	intron (NM_178457, intron 1 of 5)	19064	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
87617	chr16	74380921	74381180	+	0	NA	intron (NM_001306094, intron 1 of 6)	AluSx1|SINE|Alu	3098	NM_001306094	440348		NM_001018059	ENSG00000196436	NPIPB15	A-761H5.4|NPIPL2	nuclear pore complex interacting protein family member B15	protein-coding
77025	chr15	78709351	78709800	+	0	NA	Intergenic	Intergenic	-42462	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
232940	chr9	136928671	136928830	+	0	NA	Intergenic	Intergenic	15988	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
119787	chr19	41319951	41320650	+	0	NA	intron (NM_001346100, intron 3 of 4)	intron (NM_001346100, intron 3 of 4)	9823	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
9505	chr1	51295821	51296080	+	0	NA	3' UTR (NM_001297662, exon 13 of 13)	3' UTR (NM_001297662, exon 13 of 13)	2011	NM_001297666	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
225328	chr9	34621451	34621980	+	0	NA	intron (NM_001017363, intron 6 of 6)	intron (NM_001017363, intron 6 of 6)	-1192	NM_001281425	11258		NM_007234	ENSG00000137100	DCTN3	DCTN-22|DCTN22	dynactin subunit 3	protein-coding
19871	chr1	183494851	183494950	+	0	NA	intron (NM_001174061, intron 1 of 21)	AluSx3|SINE|Alu	22401	NM_001375585	9887		NM_014837	ENSG00000116698	SMG7	C1orf16|EST1C|SGA56M	SMG7 nonsense mediated mRNA decay factor	protein-coding
211368	chr7	104998721	104999180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7785	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
52381	chr12	55717851	55717950	+	0	NA	intron (NM_001487, intron 2 of 3)	intron (NM_001487, intron 2 of 3)	1608	NR_037657	2647		NM_001487	ENSG00000135441	BLOC1S1	BLOS1|BORCS1|GCN5L1|MICoA|RT14	biogenesis of lysosomal organelles complex 1 subunit 1	protein-coding
28202	chr10	44963321	44963630	+	0	NA	intron (NM_032023, intron 1 of 10)	intron (NM_032023, intron 1 of 10)	3673	NM_032023	83937		NM_032023	ENSG00000107551	RASSF4	AD037	Ras association domain family member 4	protein-coding
15462	chr1	150348151	150348750	+	0	NA	intron (NR_146768, intron 14 of 15)	intron (NR_146768, intron 14 of 15)	-15661	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
196812	chr6	46103501	46104080	+	0	NA	intron (NM_001370650, intron 1 of 6)	LTR49|LTR|ERV1	-23442	NM_001114086	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
180284	chr5	1867251	1867450	+	0	NA	Intergenic	Intergenic	-10782	NR_104602	101929034		NR_104602	ENSG00000250417	LINC02116	-	long intergenic non-protein coding RNA 2116	ncRNA
53413	chr12	64757171	64757750	+	0	NA	intron (NM_002076, intron 1 of 13)	intron (NM_002076, intron 1 of 13)	1946	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
216539	chr8	21486971	21487130	+	0	NA	Intergenic	MIRb|SINE|MIR	188811	NR_104677	101929172		NR_104677	ENSG00000254334	LINC03093	-	long intergenic non-protein coding RNA 3093	ncRNA
48647	chr12	10411121	10411800	+	0	NA	TTS (NM_002261)	TTS (NM_002261)	-1314	NM_001199805	100528032		NM_001199805		KLRC4-KLRK1	-	KLRC4-KLRK1 readthrough	protein-coding
163888	chr3	52514921	52515630	+	0	NA	intron (NM_015136, intron 36 of 68)	intron (NM_015136, intron 36 of 68)	18582	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
83230	chr16	23841171	23841330	+	0	NA	intron (NM_212535, intron 2 of 16)	AluSx1|SINE|Alu	5267	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
16398	chr1	154431201	154432030	+	0	NA	intron (NM_001206866, intron 3 of 6)	MER44D|DNA|TcMar-Tigger	-25051	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
65296	chr14	50061401	50062200	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	43243	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
113324	chr19	8589551	8589650	+	0	NA	intron (NM_030957, intron 16 of 25)	CpG-13619	2596	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
9807	chr1	53811771	53811930	+	0	NA	intron (NM_018087, intron 6 of 17)	L1PB1|LINE|L1	26446	NM_018087	55706		NM_018087	ENSG00000058804	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
205563	chr7	20784921	20785450	+	0	NA	exon (NM_182700, exon 2 of 2)	exon (NM_182700, exon 2 of 2)	1701	NM_198956	221833		NM_182700	ENSG00000164651	SP8	BTD	Sp8 transcription factor	protein-coding
42249	chr11	68122601	68123000	+	0	NA	Intergenic	AluY|SINE|Alu	-1412	NM_001376220	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
234977	chrX	39445421	39445680	+	0	NA	Intergenic	Intergenic	-53776	NR_110385	101927449		NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
104979	chr17	81992401	81992600	+	0	NA	intron (NR_045351, intron 3 of 14)	intron (NR_045351, intron 3 of 14)	14871	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
154715	chr22	36434371	36434830	+	0	NA	Intergenic	L2b|LINE|L2	-46633	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
114795	chr19	13784821	13786080	+	0	NA	Intergenic	MIRb|SINE|MIR	-9993	NM_001367834	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
208897	chr7	73851151	73851850	+	0	NA	Intergenic	Intergenic	-8984	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
75611	chr15	67120671	67122900	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	-3931	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
71619	chr14	106694601	106695180	+	0	NA	Intergenic	Intergenic	156109	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
43455	chr11	77996201	77996400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1632	NM_033547	92105		NM_033547	ENSG00000149262	INTS4	INT4|MST093	integrator complex subunit 4	protein-coding
138899	chr2	218009201	218009530	+	0	NA	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-25569	NR_034176	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
136381	chr2	176118271	176118530	+	0	NA	intron (NM_002148, intron 1 of 1)	intron (NM_002148, intron 1 of 1)	1622	NM_002148	3236		NM_002148	ENSG00000128710	HOXD10	HOX4|HOX4D|HOX4E|Hox-4.4	homeobox D10	protein-coding
165128	chr3	71721071	71722200	+	0	NA	intron (NM_173359, intron 2 of 7)	THE1D|LTR|ERVL-MaLR	3767	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
54556	chr12	92178471	92178900	+	0	NA	intron (NR_135036, intron 2 of 2)	intron (NR_135036, intron 2 of 2)	32600	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
99099	chr17	49035801	49036230	+	0	NA	intron (NM_001160423, intron 5 of 12)	CpG	38630	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
17919	chr1	160251671	160252580	+	0	NA	intron (NR_028104, intron 1 of 12)	intron (NR_028104, intron 1 of 12)	-9624	NR_147618	100287049		NR_147618	ENSG00000228606	DCAF8-DT	-	DCAF8 divergent transcript	ncRNA
211396	chr7	105026701	105027430	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	12860	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
178575	chr4	151130621	151130880	+	0	NA	intron (NM_001378121, intron 18 of 20)	AluSg4|SINE|Alu	26923	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
64932	chr14	35801821	35802180	+	0	NA	intron (NM_014990, intron 1 of 40)	L1ME1|LINE|L1	7295	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
187711	chr5	143384651	143384750	+	0	NA	intron (NR_157096, intron 1 of 7)	MSTA-int|LTR|ERVL-MaLR	18583	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
239	chr1	902721	902980	+	0	NA	Intergenic	Intergenic	16842	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
93581	chr17	19112601	19113880	+	0	NA	promoter-TSS (NR_006882)	promoter-TSS (NR_006882)	-604	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
21847	chr1	207363251	207363980	+	0	NA	Intergenic	L2|LINE|L2	41937	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
27994	chr10	43120801	43121800	+	0	NA	intron (NM_020975, intron 15 of 19)	intron (NM_020975, intron 15 of 19)	16568	NM_001355216	5979		NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1	ret proto-oncogene	protein-coding
180330	chr5	6571871	6572230	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-10086	NR_024423	255167		NR_024423	ENSG00000250056	LINC01018	SRHC	long intergenic non-protein coding RNA 1018	ncRNA
62169	chr13	97295301	97295500	+	0	NA	intron (NM_001382697, intron 2 of 4)	intron (NM_001382697, intron 2 of 4)	73067	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
227841	chr9	93468301	93468500	+	0	NA	intron (NM_001286723, intron 1 of 9)	intron (NM_001286723, intron 1 of 9)	-14799	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
35956	chr11	2701351	2701680	+	0	NA	intron (NM_181798, intron 11 of 15)	MER45C|DNA|hAT-Tip100	-1517	NR_002728	10984		NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1	ncRNA
118268	chr19	35265921	35266380	+	0	NA	intron (NM_205834, intron 5 of 9)	intron (NM_205834, intron 5 of 9)	-2812	NM_001321150	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
204072	chr7	2049521	2050580	+	0	NA	intron (NM_001304524, intron 10 of 16)	CpG	39002	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
80692	chr16	3051801	3052000	+	0	NA	TTS (NR_123723)	TTS (NR_123723)	5339	NM_022468	64386		NM_004142	ENSG00000008516	MMP25	MMP-25|MMP20|MMP20A|MMPL1|MT-MMP 6|MT-MMP6|MT6-MMP|MT6MMP|MTMMP6	matrix metallopeptidase 25	protein-coding
7630	chr1	35561651	35562550	+	0	NA	intron (NM_014284, intron 3 of 6)	intron (NM_014284, intron 3 of 6)	4301	NM_014284	23154		NM_014284	ENSG00000020129	NCDN	NEDIES	neurochondrin	protein-coding
34494	chr10	132546521	132546980	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	8963	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
39865	chr11	62427771	62428280	+	0	NA	Intergenic	Mam_R4|LINE|Dong-R4	8992	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
88384	chr16	84610601	84611200	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	7178	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
232668	chr9	136507271	136507750	+	0	NA	intron (NM_017617, intron 21 of 33)	intron (NM_017617, intron 21 of 33)	12116	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
43937	chr11	93521071	93521430	+	0	NA	intron (NM_020179, intron 1 of 2)	intron (NM_020179, intron 1 of 2)	22141	NM_020179	56935		NM_020179	ENSG00000166002	SMCO4	C11orf75|FN5	single-pass membrane protein with coiled-coil domains 4	protein-coding
208436	chr7	66844051	66846180	+	0	NA	promoter-TSS (NR_003934)	promoter-TSS (NR_003934)	-289	NR_003934	729156		NR_003934	ENSG00000291206	GTF2IRD1P1	-	GTF2I repeat domain containing 1 pseudogene 1	pseudo
235701	chrX	48831951	48832280	+	0	NA	exon (NM_013271, exon 2 of 3)	exon (NM_013271, exon 2 of 3)	3495	NM_013271	27344		NM_013271	ENSG00000102109	PCSK1N	BigLEN|PEN|PROSAAS|SAAS|SCG8|SgVIII	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
40664	chr11	64749901	64750100	+	0	NA	intron (NM_001164716, intron 15 of 17)	AluY|SINE|Alu	-4544	NM_153819	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
213043	chr7	131048621	131049230	+	0	NA	intron (NR_109850, intron 3 of 5)	L2a|LINE|L2	58105	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
3083	chr1	12190571	12190980	+	0	NA	promoter-TSS (NR_039775)	promoter-TSS (NR_039775)	-938	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
143102	chr20	23354901	23355300	+	0	NA	TTS (NM_013248)	TTS (NM_013248)	3027	NR_109884	100505683		NR_109884	ENSG00000232645	LINC01431	-	long intergenic non-protein coding RNA 1431	ncRNA
178462	chr4	148216671	148217580	+	0	NA	intron (NR_148974, intron 3 of 6)	intron (NR_148974, intron 3 of 6)	225289	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
73428	chr15	43120151	43120450	+	0	NA	Intergenic	AluSx|SINE|Alu	-12815	NM_001347009	80021		NM_024956	ENSG00000137842	TMEM62	-	transmembrane protein 62	protein-coding
14122	chr1	120940971	120941500	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-1365	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
174994	chr4	49711301	49711880	+	0	NA	Intergenic	SAR|Satellite|Satellite	724948	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
33218	chr10	114068121	114068380	+	0	NA	Intergenic	Intergenic	24384	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
60032	chr13	32638701	32638900	+	0	NA	intron (NM_015032, intron 1 of 34)	L2b|LINE|L2	52348	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
39890	chr11	62499901	62500750	+	0	NA	intron (NM_024060, intron 4 of 5)	MamTip2|DNA|hAT-Tip100	45339	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
224727	chr9	21582351	21582650	+	0	NA	Intergenic	AluJr|SINE|Alu	-22702	NR_152878	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
189481	chr5	173093071	173093230	+	0	NA	TTS (NM_001168394)	TTS (NM_001168394)	36798	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
162076	chr3	46877601	46878080	+	0	NA	5' UTR (NM_000316, exon 1 of 16)	5' UTR (NM_000316, exon 1 of 16)	119	NM_000316	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
111953	chr19	4809521	4810580	+	0	NA	Intergenic	L2c|LINE|L2	18316	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
65822	chr14	54886571	54886730	+	0	NA	intron (NM_001024024, intron 1 of 6)	MIRc|SINE|MIR	-8457	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
155698	chr22	39085951	39086430	+	0	NA	intron (NM_001349436, intron 5 of 7)	AluSp|SINE|Alu	8915	NM_001349438	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
115618	chr19	16081221	16082130	+	0	NA	intron (NM_001367838, intron 2 of 8)	AluSc|SINE|Alu	4659	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
142401	chr20	3849921	3850180	+	0	NA	intron (NM_001385663, intron 1 of 7)	AluY|SINE|Alu	3216	NM_020746	57506		NM_020746	ENSG00000088888	MAVS	CARDIF|IPS-1|IPS1|VISA	mitochondrial antiviral signaling protein	protein-coding
65993	chr14	58171051	58171350	+	0	NA	Intergenic	Intergenic	-18987	NM_001001872	145407		NM_001001872	ENSG00000139971	ARMH4	C14orf37|UT2|c14_5376	armadillo like helical domain containing 4	protein-coding
232902	chr9	136855251	136855730	+	0	NA	exon (NM_206920, exon 12 of 27)	exon (NM_206920, exon 12 of 27)	3144	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
178458	chr4	148081971	148082330	+	0	NA	intron (NR_148974, intron 6 of 6)	intron (NR_148974, intron 6 of 6)	299555	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
171655	chr3	197657951	197658750	+	0	NA	Intergenic	CpG	16226	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
207109	chr7	41816251	41816430	+	0	NA	Intergenic	Intergenic	-113250	NM_002192	3624		NM_002192	ENSG00000122641	INHBA	EDF|FRP	inhibin subunit beta A	protein-coding
89245	chr16	88646121	88646480	+	0	NA	intron (NM_000101, intron 4 of 5)	intron (NM_000101, intron 4 of 5)	4753	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
137107	chr2	190982551	190982850	+	0	NA	intron (NM_139266, intron 17 of 22)	Tigger17a|DNA|TcMar-Tigger	31471	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
57177	chr12	121432621	121433200	+	0	NA	intron (NM_001005366, intron 21 of 22)	intron (NM_001005366, intron 21 of 22)	11442	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
3502	chr1	16042821	16043150	+	0	NA	promoter-TSS (NM_000085)	promoter-TSS (NM_000085)	-797	NM_000085	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
237735	chrX	128782921	128783250	+	0	NA	Intergenic	L1PA3|LINE|L1	-730682	NM_138289	139741		NM_138289	ENSG00000123165	ACTRT1	AIP1|ARIP1|ARPT1|HSD27	actin related protein T1	protein-coding
55458	chr12	104653751	104654530	+	0	NA	intron (NM_018413, intron 2 of 2)	L2c|LINE|L2	62507	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
9898	chr1	54375651	54375950	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	30594	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
111603	chr19	4100851	4101150	+	0	NA	intron (NM_030662, intron 6 of 10)	intron (NM_030662, intron 6 of 10)	23122	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
115485	chr19	15371201	15371600	+	0	NA	intron (NM_005858, intron 7 of 13)	intron (NM_005858, intron 7 of 13)	8387	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
232652	chr9	136480321	136480580	+	0	NA	intron (NM_014866, intron 1 of 31)	intron (NM_014866, intron 1 of 31)	-2560	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
114083	chr19	11105201	11105800	+	0	NA	exon (NM_001195798, exon 4 of 18)	exon (NM_001195798, exon 4 of 18)	-7974	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
16419	chr1	154531751	154531850	+	0	NA	intron (NM_001098475, intron 6 of 11)	LTR12C|LTR|ERV1	-21809	NR_046668	100874097		NR_046668	ENSG00000229780	UBE2Q1-AS1	-	UBE2Q1 antisense RNA 1	ncRNA
123630	chr19	54620201	54620400	+	0	NA	intron (NM_006669, intron 1 of 15).2	MER4B-int|LTR|ERV1	3370	NM_006669	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
63514	chr13	114279421	114279880	+	0	NA	Intergenic	Intergenic	-1951	NM_080687	65110		NM_023011	ENSG00000169062	UPF3A	HUPF3A|RENT3A|UPF3	UPF3A regulator of nonsense mediated mRNA decay	protein-coding
171905	chr4	825451	827680	+	0	NA	promoter-TSS (NM_006651)	promoter-TSS (NM_006651)	-436	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
67716	chr14	73463371	73463780	+	0	NA	promoter-TSS (NR_135251)	promoter-TSS (NR_135251)	67	NR_135251	101928143		NR_135251	ENSG00000284930	LOC101928143	-	uncharacterized LOC101928143	ncRNA
108060	chr18	59818851	59819180	+	0	NA	Intergenic	L1PA10|LINE|L1	-80981	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
5052	chr1	24557601	24558100	+	0	NA	intron (NM_001010980, intron 1 of 3)	intron (NM_001010980, intron 1 of 3)	1763	NM_001010980	400746		NM_001010980	ENSG00000184454	NCMAP	C1orf130|MP11	non-compact myelin associated protein	protein-coding
218561	chr8	54169321	54169660	+	0	NA	Intergenic	Intergenic	34249	NM_014175	29088		NM_014175	ENSG00000137547	MRPL15	HSPC145|L15mt|MRP-L15|MRP-L7|RPML7|uL15m	mitochondrial ribosomal protein L15	protein-coding
157388	chr22	44731851	44732150	+	0	NA	intron (NM_001017530, intron 5 of 7)	intron (NM_001017530, intron 5 of 7)	-20558	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
152400	chr22	20551901	20553350	+	0	NA	intron (NM_001003891, intron 3 of 17)	intron (NM_001003891, intron 3 of 17)	44578	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
223136	chr8	143497471	143497630	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	8698	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
187622	chr5	142980021	142980280	+	0	NA	intron (NR_146198, intron 11 of 22)	L1ME3|LINE|L1	-111240	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
110506	chr19	2054671	2055200	+	0	NA	Intergenic	Intergenic	-3691	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
188434	chr5	154421871	154422130	+	0	NA	intron (NR_037897, intron 2 of 2)	intron (NR_037897, intron 2 of 2)	23822	NR_037897	386627		NR_037897	ENSG00000245275	SAP30L-AS1	GALNT10-AS1	SAP30L antisense RNA 1 (head to head)	ncRNA
102204	chr17	75179901	75180580	+	0	NA	intron (NM_006937, intron 2 of 3)	AluSz|SINE|Alu	2719	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
84648	chr16	30723821	30724080	+	0	NA	exon (NM_006662, exon 25 of 34)	exon (NM_006662, exon 25 of 34)	13413	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
118252	chr19	35250171	35250730	+	0	NA	exon (NM_001260489, exon 2 of 9)	exon (NM_001260489, exon 2 of 9)	1448	NM_001385215	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
195171	chr6	35917821	35918080	+	0	NA	intron (NR_034069, intron 2 of 15)	MIRb|SINE|MIR	3148	NM_003137	6732		NM_003137	ENSG00000096063	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
180921	chr5	34474451	34474830	+	0	NA	Intergenic	Intergenic	-181688	NM_001145522	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
112928	chr19	7677551	7678350	+	0	NA	intron (NM_174918, intron 2 of 6)	intron (NM_174918, intron 2 of 6)	893	NM_174918	199675		NM_174918	ENSG00000183019	MCEMP1	C19orf59	mast cell expressed membrane protein 1	protein-coding
206322	chr7	30290271	30291050	+	0	NA	promoter-TSS (NR_037513)	promoter-TSS (NR_037513)	-770	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
173184	chr4	6761801	6762280	+	0	NA	Intergenic	Intergenic	-20687	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
35253	chr11	855921	856380	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	11704	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
11282	chr1	89195351	89195880	+	0	NA	intron (NM_052941, intron 2 of 10)	intron (NM_052941, intron 2 of 10)	3327	NM_052941	115361		NM_052941	ENSG00000162654	GBP4	Mpa2	guanylate binding protein 4	protein-coding
166546	chr3	115146401	115148500	+	0	NA	promoter-TSS (NM_001348803)	promoter-TSS (NM_001348803)	-162	NM_001348803	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
26494	chr10	17854251	17854750	+	0	NA	intron (NM_002438, intron 8 of 29)	intron (NM_002438, intron 8 of 29)	9393	NR_030167	574445		NR_030167	ENSG00000207938	MIR511	MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511	microRNA 511	ncRNA
27558	chr10	32345651	32346700	+	0	NA	intron (NR_168507, intron 1 of 1)	intron (NR_168507, intron 1 of 1)	983	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
132009	chr2	100612451	100612750	+	0	NA	Intergenic	Intergenic	8861	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
168355	chr3	141887401	141888030	+	0	NA	intron (NM_001679, intron 1 of 6)	L1ME2z|LINE|L1	11072	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
202007	chr6	152589701	152589900	+	0	NA	intron (NM_033071, intron 2 of 145)	intron (NM_033071, intron 2 of 145)	47051	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
212584	chr7	128941221	128941700	+	0	NA	intron (NM_001364314, intron 1 of 8)	intron (NM_001364314, intron 1 of 8)	192	NM_001364314	3663		NM_032643	ENSG00000128604	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
217266	chr8	27330651	27331130	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	5326	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
200286	chr6	132795301	132795500	+	0	NA	intron (NM_052831, intron 2 of 13)	MIRb|SINE|MIR	3237	NM_052831	116843		NM_052831	ENSG00000146409	SLC18B1	C6orf192|VPAT|dJ55C23.6	solute carrier family 18 member B1	protein-coding
175824	chr4	77963001	77963200	+	0	NA	Intergenic	Intergenic	-94223	NM_025074	80144		NM_020875	ENSG00000138759	FRAS1	FRASRS1	Fraser extracellular matrix complex subunit 1	protein-coding
214219	chr7	148772451	148772830	+	0	NA	intron (NM_001370660, intron 9 of 21)	intron (NM_001370660, intron 9 of 21)	72930	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
51794	chr12	53373651	53374150	+	0	NA	Intergenic	Intergenic	-6276	NM_001251825	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
107438	chr18	46222721	46223500	+	0	NA	intron (NM_001008239, intron 2 of 3)	intron (NM_001008239, intron 2 of 3)	49076	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
169994	chr3	179652201	179653900	+	0	NA	promoter-TSS (NM_003940)	promoter-TSS (NM_003940)	10	NM_003940	8975		NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13	protein-coding
229329	chr9	120898451	120898750	+	0	NA	Intergenic	Intergenic	-3704	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
39157	chr11	57320351	57320650	+	0	NA	exon (NM_033396, exon 3 of 12)	exon (NM_033396, exon 3 of 12)	4452	NM_033396	85456		NM_033396	ENSG00000149115	TNKS1BP1	CNOT12|TAB182	tankyrase 1 binding protein 1	protein-coding
121751	chr19	47749471	47750030	+	0	NA	intron (NM_015710, intron 2 of 12)	FLAM_C|SINE|Alu	4204	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
176173	chr4	83284051	83285780	+	0	NA	promoter-TSS (NM_001358921)	promoter-TSS (NM_001358921)	-117	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
111704	chr19	4300471	4300830	+	0	NA	intron (NM_144615, intron 1 of 4)	FRAM|SINE|Alu	1781	NM_144615	126259		NM_144615	ENSG00000167664	TMIGD2	CD28H|IGPR-1|IGPR1	transmembrane and immunoglobulin domain containing 2	protein-coding
132303	chr2	105235601	105236080	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-5903	NM_007227	11250		NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
143140	chr20	23921271	23921830	+	0	NA	Intergenic	Intergenic	-41802	NM_001900	1473		NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
228155	chr9	96935751	96936680	+	0	NA	intron (NM_001045477, intron 3 of 6)	intron (NM_001045477, intron 3 of 6)	7372	NM_001045477	441457		NM_001024597	ENSG00000188152	NUTM2G	FAM22G|NUTMG	NUT family member 2G	protein-coding
91700	chr17	6445251	6445550	+	0	NA	exon (NM_001195228, exon 2 of 5)	exon (NM_001195228, exon 2 of 5)	945	NM_001195228	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
211352	chr7	104954321	104954780	+	0	NA	Intergenic	AluSz|SINE|Alu	-27905	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
221032	chr8	116705471	116705630	+	0	NA	intron (NM_003756, intron 2 of 7)	L1MD3|LINE|L1	50273	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
72154	chr15	29102121	29102730	+	0	NA	intron (NM_001353793, intron 8 of 12).2	intron (NM_001353793, intron 8 of 12).2	31767	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
38086	chr11	35202501	35203300	+	0	NA	intron (NM_001001389, intron 8 of 16)	intron (NM_001001389, intron 8 of 16)	39950	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
130005	chr2	74150071	74150830	+	0	NA	non-coding (NR_045634, exon 2 of 2)	non-coding (NR_045634, exon 2 of 2)	2469	NR_045636	100507171		NR_045634	ENSG00000225439	BOLA3-DT	BOLA3-AS1	BOLA3 divergent transcript	ncRNA
37162	chr11	13860051	13860580	+	0	NA	intron (NR_149109, intron 3 of 3)	intron (NR_149109, intron 3 of 3)	10301	NR_149109	105376561		NR_149109	ENSG00000254930	LINC02545	-	long intergenic non-protein coding RNA 2545	ncRNA
169129	chr3	155873351	155874050	+	0	NA	intron (NM_003875, intron 1 of 15)	AluY|SINE|Alu	3050	NM_003875	8833		NM_003875	ENSG00000163655	GMPS	GATD7	guanine monophosphate synthase	protein-coding
229023	chr9	114098121	114098790	+	0	NA	intron (NM_138424, intron 1 of 15)	CpG-28689	602	NM_138424	113220		NM_138424	ENSG00000136883	KIF12	PFIC8	kinesin family member 12	protein-coding
98903	chr17	48592171	48592690	+	0	NA	exon (NM_002147, exon 2 of 2)	exon (NM_002147, exon 2 of 2)	138	NR_033203	404266		NR_033201	ENSG00000233101	HOXB-AS3	-	HOXB cluster antisense RNA 3	ncRNA
156065	chr22	39998401	39998700	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	3596	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
217298	chr8	27376721	27377780	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	51686	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
186235	chr5	134400401	134400600	+	0	NA	Intergenic	FRAM|SINE|Alu	11381	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
95926	chr17	38920901	38921280	+	0	NA	non-coding (NR_073384, exon 8 of 8)	non-coding (NR_073384, exon 8 of 8)	-4078	NR_038847	100505576		NM_001414697	ENSG00000263874	LASP1NB	LINC00672	LASP1 neighbor	protein-coding
223713	chr8	144454271	144454680	+	0	NA	intron (NM_138496, intron 2 of 4)	intron (NM_138496, intron 2 of 4)	8064	NR_162109	113218512		NR_162109		MIR10400	-	microRNA 10400	ncRNA
74071	chr15	52600471	52600700	+	0	NA	intron (NR_169538, intron 8 of 12)	A-rich|Low_complexity|Low_complexity	-31139	NM_001306191	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
70748	chr14	103393871	103394480	+	0	NA	intron (NM_002376, intron 1 of 15)	intron (NM_002376, intron 1 of 15)	8760	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
71046	chr14	104791151	104791450	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	2301	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
161471	chr3	42265701	42266100	+	0	NA	5' UTR (NM_000729, exon 1 of 5)	5' UTR (NM_000729, exon 1 of 5)	285	NM_000729	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
38273	chr11	39959051	39959250	+	0	NA	Intergenic	AluY|SINE|Alu	333980	NR_047673	57689		NM_020929	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
153141	chr22	23765451	23765750	+	0	NA	TTS (NM_001301339)	TTS (NM_001301339)	2372	NR_125756	400916		NM_213720	ENSG00000250479	CHCHD10	C22orf16|FTDALS2|IMMD|MIX17A|N27C7-4|SMAJ	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding
78315	chr15	90947921	90948350	+	0	NA	intron (NM_001323619, intron 12 of 20)	intron (NM_001323619, intron 12 of 20)	-6741	NM_001017919	91433		NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
149316	chr21	29021901	29022900	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2217	NM_001001992	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
133762	chr2	127637671	127638030	+	0	NA	TTS (NM_017980)	TTS (NM_017980)	-8014	NM_001161415	2840		NM_005291	ENSG00000144230	GPR17	-	G protein-coupled receptor 17	protein-coding
121939	chr19	48461371	48461980	+	0	NA	5' UTR (NM_013348, exon 2 of 3)	5' UTR (NM_013348, exon 2 of 3)	6101	NM_013348	3770		NM_013348	ENSG00000182324	KCNJ14	IRK4|KIR2.4	potassium inwardly rectifying channel subfamily J member 14	protein-coding
234816	chrX	24149131	24151330	+	0	NA	promoter-TSS (NR_046657)	promoter-TSS (NR_046657)	501	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
203578	chr7	914101	914500	+	0	NA	intron (NM_006869, intron 4 of 10)	intron (NM_006869, intron 4 of 10)	6589	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
107867	chr18	54983101	54983480	+	0	NA	Intergenic	Intergenic	-23829	NM_025214	80323		NM_025214	ENSG00000166510	CCDC68	SE57-1	coiled-coil domain containing 68	protein-coding
183843	chr5	87012951	87013300	+	0	NA	Intergenic	AluY|SINE|Alu	101829	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
237869	chrX	130330671	130330930	+	0	NA	Intergenic	Intergenic	-9088	NM_001282198	9016		NM_003951	ENSG00000102078	SLC25A14	BMCP1|UCP5	solute carrier family 25 member 14	protein-coding
213911	chr7	142511771	142512200	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	37458	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
136518	chr2	177247601	177248030	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	8195	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
58478	chr12	132148171	132148500	+	0	NA	intron (NM_024078, intron 7 of 14)	intron (NM_024078, intron 7 of 14)	3878	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
6603	chr1	28779401	28779600	+	0	NA	Intergenic	AluJb|SINE|Alu	-32670	NM_000911	4985		NM_000911	ENSG00000116329	OPRD1	DOP|DOR|DOR1|OPRD	opioid receptor delta 1	protein-coding
155666	chr22	39025771	39025930	+	0	NA	intron (NM_152426, intron 4 of 6)	intron (NM_152426, intron 4 of 6)	4723	NM_152426	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
110887	chr19	2648351	2648830	+	0	NA	intron (NM_052847, intron 1 of 4)	intron (NM_052847, intron 1 of 4)	17875	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
52002	chr12	53969871	53970230	+	0	NA	intron (NR_047517, intron 1 of 5)	intron (NR_047517, intron 1 of 5)	-1136	NR_047518	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
234531	chrX	19642751	19643250	+	0	NA	intron (NM_001353892, intron 8 of 17)	intron (NM_001353892, intron 8 of 17)	27999	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
36832	chr11	10076901	10077100	+	0	NA	intron (NM_030962, intron 2 of 39)	L1PA15-16|LINE|L1	217207	NM_030962	81846		NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
129344	chr2	68755021	68755500	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	-19650	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
106923	chr18	26190251	26191180	+	0	NA	intron (NM_144662, intron 6 of 6)	AluJb|SINE|Alu	-35730	NR_121653	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
163336	chr3	50405171	50405730	+	0	NA	intron (NM_006030, intron 3 of 37)	intron (NM_006030, intron 3 of 37)	40087	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
25922	chr10	11321051	11321530	+	0	NA	exon (NM_001326324, exon 12 of 15)	exon (NM_001326324, exon 12 of 15)	23384	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70302	chr14	101808071	101808680	+	0	NA	intron (NM_001352914, intron 3 of 14)	intron (NM_001352914, intron 3 of 14)	-1460	NM_001352916	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
25893	chr10	11271521	11271780	+	0	NA	intron (NM_001326330, intron 7 of 12)	L3|LINE|CR1	73024	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
223614	chr8	144316971	144317550	+	0	NA	promoter-TSS (NR_106907)	promoter-TSS (NR_106907)	55	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
114389	chr19	12573871	12574300	+	0	NA	Intergenic	MSTA1|LTR|ERVL-MaLR	-22603	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
220850	chr8	103152101	103152380	+	0	NA	intron (NM_001024372, intron 1 of 1)	L2b|LINE|L2	-2374	NR_036106	100422992		NR_036106	ENSG00000265657	MIR3151	mir-3151	microRNA 3151	ncRNA
70971	chr14	104700621	104701230	+	0	NA	intron (NM_032714, intron 1 of 4)	intron (NM_032714, intron 1 of 4)	11307	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
22439	chr1	220527951	220528750	+	0	NA	5' UTR (NM_001286129, exon 1 of 3)	5' UTR (NM_001286129, exon 1 of 3)	167	NM_001286126	4139		NM_018650	ENSG00000116141	MARK1	MARK|Par-1c|Par1c	microtubule affinity regulating kinase 1	protein-coding
75733	chr15	68231601	68232000	+	0	NA	Intergenic	Intergenic	-2072	NM_017882	54982		NM_017882	ENSG00000128973	CLN6	CLN4A|CLN6A|HsT18960|nclf	CLN6 transmembrane ER protein	protein-coding
100316	chr17	59832901	59833400	+	0	NA	intron (NM_030938, intron 10 of 11)	intron (NM_030938, intron 10 of 11)	-8116	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
8669	chr1	41896151	41896250	+	0	NA	intron (NR_038260, intron 1 of 2)	MIR|SINE|MIR	22722	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
183221	chr5	76309021	76309380	+	0	NA	intron (NM_001297716, intron 12 of 12)	intron (NM_001297716, intron 12 of 12)	-94085	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
198445	chr6	106111451	106112080	+	0	NA	Intergenic	Intergenic	12824	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
191648	chr6	13374201	13374700	+	0	NA	intron (NM_018988, intron 1 of 1)	AluSz|SINE|Alu	33687	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
182388	chr5	61275851	61276350	+	0	NA	Intergenic	L2b|LINE|L2	-11171	NR_146624	105378992		NR_146624	ENSG00000249279	LINC02057	-	long intergenic non-protein coding RNA 2057	ncRNA
215099	chr7	155206401	155207600	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-90772	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
13717	chr1	116787671	116788030	+	0	NA	Intergenic	L1PB1|LINE|L1	33420	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
87605	chr16	74362301	74362700	+	0	NA	intron (NR_026950, intron 1 of 14)	intron (NR_026950, intron 1 of 14)	5755	NR_026950	283922		NR_026950	ENSG00000290890	PDPR2P	-	pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene	pseudo
152622	chr22	21434351	21435680	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	17644	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
187400	chr5	141913971	141914830	+	0	NA	Intergenic	CpG	-9471	NM_001142603	9812		NM_014773	ENSG00000081791	DELE1	DELE|DELE1(L)|KIAA0141	DAP3 binding cell death enhancer 1	protein-coding
9556	chr1	51615471	51615630	+	0	NA	Intergenic	L2a|LINE|L2	-1542	NM_148906	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
12508	chr1	108114401	108114600	+	0	NA	Intergenic	LTR16D|LTR|ERVL	78335	NM_213651	29957		NM_013386	ENSG00000085491	SLC25A24	APC1|SCAMC-1|SCAMC1	solute carrier family 25 member 24	protein-coding
141018	chr2	238165871	238166580	+	0	NA	intron (NM_001291832, intron 7 of 7)	intron (NM_001291832, intron 7 of 7)	7255	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
61290	chr13	50192701	50193100	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	20882	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
199673	chr6	122466221	122466680	+	0	NA	intron (NM_020755, intron 1 of 9)	AluJb|SINE|Alu	5357	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
107361	chr18	45938291	45939400	+	0	NA	intron (NM_020964, intron 10 of 43)	intron (NM_020964, intron 10 of 43)	28484	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
73019	chr15	40767601	40767800	+	0	NA	TTS (NM_005258)	TTS (NM_005258)	-2280	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
110381	chr19	1921271	1921430	+	0	NA	intron (NM_079834, intron 5 of 6)	intron (NM_079834, intron 5 of 6)	15951	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
1997	chr1	6727421	6727850	+	0	NA	intron (NR_104621, intron 1 of 1)	intron (NR_104621, intron 1 of 1)	108	NR_104621	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
119430	chr19	40351951	40352250	+	0	NA	intron (NM_012268, intron 1 of 12)	AluSz|SINE|Alu	3405	NM_012268	23646		NM_012268	ENSG00000105223	PLD3	AD19|HU-K4|HUK4|SCA46	phospholipase D family member 3	protein-coding
148088	chr20	63304071	63304530	+	0	NA	intron (NM_020882, intron 3 of 35)	(CCTC)n|Simple_repeat|Simple_repeat	11114	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
163517	chr3	51434571	51435130	+	0	NA	intron (NR_146065, intron 8 of 25)	LTR101_Mam|LTR|ERVL	43565	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
145003	chr20	37564321	37564800	+	0	NA	Intergenic	CpG	-36629	NM_001167820	10904		NM_006698	ENSG00000166619	BLCAP	BC10	BLCAP apoptosis inducing factor	protein-coding
189898	chr5	177348501	177348700	+	0	NA	intron (NM_006816, intron 2 of 7)	AluSz6|SINE|Alu	3068	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
203986	chr7	1720121	1720380	+	0	NA	intron (NM_001128636, intron 2 of 2)	intron (NM_001128636, intron 2 of 2)	22060	NR_120509	101927125		NR_120508	ENSG00000236081	ELFN1-AS1	MYCLo-2	ELFN1 antisense RNA 1	ncRNA
96987	chr17	42274851	42274950	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	1491	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
18999	chr1	169508521	169508880	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-22730	NM_001319667	10560		NM_006996	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 member 2	protein-coding
144405	chr20	35276421	35276800	+	0	NA	non-coding (NR_149148, exon 3 of 3)	non-coding (NR_149148, exon 3 of 3)	1512	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
166579	chr3	118850851	118850950	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	-40067	NR_135547	105374060		NR_135547		LOC105374060	-	uncharacterized LOC105374060	ncRNA
215142	chr7	155456951	155457350	+	0	NA	promoter-TSS (NM_001427)	promoter-TSS (NM_001427)	-979	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
46531	chr11	128460471	128460880	+	0	NA	3' UTR (NM_001330451, exon 7 of 7)	3' UTR (NM_001330451, exon 7 of 7)	61635	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
201598	chr6	149355601	149355800	+	0	NA	intron (NM_001369506, intron 2 of 7)	intron (NM_001369506, intron 2 of 7)	37400	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
61265	chr13	50078201	50078750	+	0	NA	intron (NR_152566, intron 1 of 13)	intron (NR_152566, intron 1 of 13)	3566	NR_152568	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
230539	chr9	128386401	128386600	+	0	NA	intron (NR_049743, intron 2 of 4)	intron (NR_049743, intron 2 of 4)	-6121	NR_039815	100616335		NR_039815	ENSG00000283335	MIR219B	MIR2964A|hsa-mir-219b|mir-219b	microRNA 219b	ncRNA
100537	chr17	62506051	62506350	+	0	NA	intron (NM_001375269, intron 2 of 20)	intron (NM_001375269, intron 2 of 20)	25087	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
158208	chr22	50258451	50259030	+	0	NA	intron (NM_001303252, intron 2 of 10)	intron (NM_001303252, intron 2 of 10)	2943	NM_002969	6300		NM_002969	ENSG00000188130	MAPK12	ERK-6|ERK3|ERK6|MAPK 12|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
20207	chr1	193124571	193124730	+	0	NA	intron (NM_024529, intron 1 of 16)	L4_A_Mam|LINE|RTE-X	2619	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
163491	chr3	51024421	51026000	+	0	NA	intron (NM_004947, intron 5 of 52)	L1PBa|LINE|L1	350130	NR_039950	100616138		NR_039950	ENSG00000272543	MIR4787	mir-4787	microRNA 4787	ncRNA
193669	chr6	30965201	30965680	+	0	NA	Intergenic	Intergenic	-10578	NR_138040	102723346		NR_138040		HCG21	NCRNA00150	HLA complex group 21	ncRNA
222356	chr8	133563701	133564350	+	0	NA	intron (NM_173344, intron 1 of 9)	LTR43|LTR|ERV1	7862	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
199774	chr6	125958051	125959350	+	0	NA	intron (NM_138571, intron 1 of 4)	MER20|DNA|hAT-Charlie	1930	NM_138571	135114		NM_138571	ENSG00000111911	HINT3	HINT4	histidine triad nucleotide binding protein 3	protein-coding
155283	chr22	38104151	38104250	+	0	NA	intron (NM_025045, intron 4 of 13)	L1MC5|LINE|L1	6484	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
86234	chr16	58126921	58127830	+	0	NA	intron (NR_136632, intron 1 of 5)	intron (NR_136632, intron 1 of 5)	2006	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
7259	chr1	32358621	32359130	+	0	NA	Intergenic	Intergenic	3368	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
31950	chr10	100669101	100669300	+	0	NA	Intergenic	Intergenic	-66196	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
102810	chr17	76432701	76432980	+	0	NA	intron (NM_022066, intron 1 of 17)	L1MB7|LINE|L1	20312	NM_022066	63893		NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin conjugating enzyme E2 O	protein-coding
3539	chr1	16117471	16117830	+	0	NA	Intergenic	Intergenic	38419	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
47568	chr12	4353671	4354350	+	0	NA	3' UTR (NM_020375, exon 6 of 6)	3' UTR (NM_020375, exon 6 of 6)	25702	NM_020638	8074		NM_020638	ENSG00000118972	FGF23	ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC	fibroblast growth factor 23	protein-coding
115992	chr19	17090221	17090900	+	0	NA	intron (NM_004145, intron 1 of 39)	intron (NM_004145, intron 1 of 39)	-1675	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
155912	chr22	39559451	39559550	+	0	NA	Intergenic	Intergenic	-11253	NM_021096	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
28914	chr10	63163621	63164150	+	0	NA	Intergenic	AluSx3|SINE|Alu	30557	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
212036	chr7	114937521	114937780	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	15496	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
38753	chr11	47119051	47119350	+	0	NA	intron (NM_001003676, intron 3 of 7)	L1PA6|LINE|L1	57679	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
47739	chr12	6496371	6496730	+	0	NA	intron (NM_014865, intron 2 of 31)	AluJb|SINE|Alu	2448	NM_014865	9918		NM_014865	ENSG00000010292	NCAPD2	CAP-D2|CNAP1|MCPH21|hCAP-D2	non-SMC condensin I complex subunit D2	protein-coding
193580	chr6	30680101	30680950	+	0	NA	intron (NM_133471, intron 1 of 2).5	intron (NM_133471, intron 1 of 2).5	6120	NM_133471	170954		NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding
16843	chr1	155685821	155686230	+	0	NA	intron (NM_139121, intron 1 of 10)	intron (NM_139121, intron 1 of 10)	2631	NM_001198903	55249		NM_018253	ENSG00000163374	YY1AP1	GRNG|HCCA1|HCCA2|YY1AP	YY1 associated protein 1	protein-coding
7488	chr1	33218871	33219030	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-36907	NM_018207	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
172250	chr4	1357051	1357630	+	0	NA	intron (NM_001317935, intron 7 of 13)	intron (NM_001317935, intron 7 of 13)	9784	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
41145	chr11	65591621	65592600	+	0	NA	TTS (NM_005714)	TTS (NM_005714)	3690	NM_033347	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
235410	chrX	45753471	45754250	+	0	NA	Intergenic	Intergenic	-6736	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
184194	chr5	95851671	95852260	+	0	NA	promoter-TSS (NR_026936)	promoter-TSS (NR_026936)	-267	NR_026936	202299		NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
163760	chr3	52366751	52367250	+	0	NA	intron (NM_015512, intron 36 of 77)	MIRb|SINE|MIR	43008	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
149537	chr21	33025001	33025200	+	0	NA	promoter-TSS (NM_005806)	promoter-TSS (NM_005806)	-835	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
86452	chr16	66928521	66929180	+	0	NA	Intergenic	Intergenic	-3314	NM_001128850	6236		NM_004165	ENSG00000166592	RRAD	RAD|RAD1|REM3	RRAD, Ras related glycolysis inhibitor and calcium channel regulator	protein-coding
210211	chr7	99143101	99143800	+	0	NA	intron (NM_181349, intron 1 of 17)	intron (NM_181349, intron 1 of 17)	658	NM_181349	57154		NM_020429	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
30931	chr10	87280801	87281000	+	0	NA	intron (NR_024397, intron 4 of 5)	intron (NR_024397, intron 4 of 5)	55452	NM_001099338	728118		NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
39359	chr11	59559621	59561730	+	0	NA	Intergenic	CpG	34483	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
35773	chr11	2161521	2162980	+	0	NA	Intergenic	Intergenic	-1041	NM_001291897	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
63135	chr13	113465451	113465830	+	0	NA	intron (NM_001014283, intron 4 of 6)	intron (NM_001014283, intron 4 of 6)	-12152	NM_138430	113622		NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
202834	chr6	159732271	159732930	+	0	NA	intron (NM_001322817, intron 2 of 7)	AluSx1|SINE|Alu	5094	NM_001270533	9589		NM_004906	ENSG00000146457	WTAP	Mum2	WT1 associated protein	protein-coding
196244	chr6	42889151	42889450	+	0	NA	TTS (NM_001008739)	TTS (NM_001008739)	1521	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
90519	chr17	1471501	1471700	+	0	NA	intron (NM_001080779, intron 19 of 31)	intron (NM_001080779, intron 19 of 31)	13801	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
50966	chr12	49550721	49550980	+	0	NA	intron (NM_001314030, intron 10 of 14)	intron (NM_001314030, intron 10 of 14)	11820	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
125245	chr2	10406401	10406930	+	0	NA	intron (NM_001258358, intron 2 of 4)	intron (NM_001258358, intron 2 of 4)	37901	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
162156	chr3	46971651	46972030	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	4661	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
184929	chr5	112963651	112964380	+	0	NA	Intergenic	Intergenic	-12783	NM_001242377	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
76872	chr15	77952921	77953280	+	0	NA	Intergenic	Intergenic	-8539	NR_157580	440292		NR_157580		COMMD4P1	-	COMM domain containing 4 pseudogene 1	pseudo
204152	chr7	2385621	2386080	+	0	NA	Intergenic	AluY|SINE|Alu	-17761	NM_001243795	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
135434	chr2	161169571	161170030	+	0	NA	intron (NM_001199135, intron 1 of 7)	MIRb|SINE|MIR	9372	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
40642	chr11	64725101	64725350	+	0	NA	Intergenic	Intergenic	-2028	NM_001376267	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
191960	chr6	16140701	16141280	+	0	NA	promoter-TSS (NR_039782)	promoter-TSS (NR_039782)	-566	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
85166	chr16	46688421	46690380	+	0	NA	promoter-TSS (NM_018206)	promoter-TSS (NM_018206)	-222	NM_018206	55737		NM_018206	ENSG00000069329	VPS35	MEM3|PARK17	VPS35 retromer complex component	protein-coding
68814	chr14	91257501	91258280	+	0	NA	Intergenic	LTR33|LTR|ERVL	-4010	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
217784	chr8	33484621	33485980	+	0	NA	intron (NM_032509, intron 1 of 9)	CpG	118	NM_032509	84549		NM_032509	ENSG00000198042	MAK16	MAK16L|RBM13	MAK16 homolog	protein-coding
200764	chr6	137826001	137826280	+	0	NA	intron (NR_049793, intron 3 of 3)	AluY|SINE|Alu	-41119	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
78233	chr15	90661221	90662330	+	0	NA	intron (NR_120371, intron 2 of 2)	AluSx1|SINE|Alu	1541	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
13925	chr1	120132151	120132330	+	0	NA	Intergenic	Intergenic	44280	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
171532	chr3	196714271	196714880	+	0	NA	intron (NM_017861, intron 1 of 5)	AluSx3|SINE|Alu	2198	NM_017861	54965		NM_017861	ENSG00000163964	PIGX	PIG-X	phosphatidylinositol glycan anchor biosynthesis class X	protein-coding
68037	chr14	75181351	75181800	+	0	NA	Intergenic	AluJb|SINE|Alu	-4963	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
34031	chr10	124721301	124722150	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	17697	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
101189	chr17	65278371	65278630	+	0	NA	Intergenic	Intergenic	141130	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
54066	chr12	76029921	76030900	+	0	NA	intron (NM_007350, intron 1 of 1)	intron (NM_007350, intron 1 of 1)	1366	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
231187	chr9	129913401	129913800	+	0	NA	intron (NM_001363755, intron 11 of 15)	AluSx|SINE|Alu	43995	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
84426	chr16	30377251	30379800	+	0	NA	TTS (NM_001324459)	TTS (NM_001324459)	211	NM_001214907	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
215393	chr7	157482271	157483030	+	0	NA	intron (NR_110157, intron 2 of 3)	(GGTGTGT)n|Simple_repeat|Simple_repeat	16419	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
15444	chr1	150306971	150307200	+	0	NA	intron (NM_031901, intron 2 of 2)	AluSx1|SINE|Alu	13224	NM_031901	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
168967	chr3	152388971	152389130	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-48060	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
74803	chr15	63443301	63443700	+	0	NA	Intergenic	AluY|SINE|Alu	53270	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
200663	chr6	137105171	137105700	+	0	NA	Intergenic	MLT1J1-int|LTR|ERVL-MaLR	-60255	NM_014432	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
189866	chr5	177298871	177299330	+	0	NA	3' UTR (NM_001365684, exon 24 of 24)	3' UTR (NM_001365684, exon 24 of 24)	4619	NM_001031677	53917		NM_130781	ENSG00000169228	RAB24	-	RAB24, member RAS oncogene family	protein-coding
82299	chr16	15636301	15637480	+	0	NA	intron (NM_001184998, intron 2 of 26).2	intron (NM_001184998, intron 2 of 26).2	6264	NM_001184999	9665		NM_014647	ENSG00000166783	MARF1	KIAA0430|LKAP|LMKB|PPP1R34	meiosis regulator and mRNA stability factor 1	protein-coding
217683	chr8	30112621	30113850	+	0	NA	intron (NM_001128208, intron 3 of 3)	AluSz|SINE|Alu	17827	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
57379	chr12	121803801	121805040	+	0	NA	intron (NM_001353345, intron 1 of 16)	CpG-6121	411	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
220782	chr8	102583271	102584230	+	0	NA	Intergenic	L2|LINE|L2	32161	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
55810	chr12	108735571	108735730	+	0	NA	Intergenic	Intergenic	-4132	NM_014325	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
179523	chr4	184823401	184823600	+	0	NA	intron (NM_001381885, intron 1 of 21)	intron (NM_001381885, intron 1 of 21)	2468	NM_001995	2180		NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long chain family member 1	protein-coding
88697	chr16	85820301	85820500	+	0	NA	Intergenic	MIRb|SINE|MIR	20705	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
145309	chr20	41058351	41058650	+	0	NA	intron (NM_003286, intron 2 of 20)	MLT1F1|LTR|ERVL-MaLR	29678	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
176720	chr4	101286001	101286400	+	0	NA	intron (NM_001130692, intron 1 of 11)	MER1B|DNA|hAT-Charlie	44214	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
209290	chr7	75986201	75986650	+	0	NA	TTS (NM_031925)	TTS (NM_031925)	8170	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
201566	chr6	149320921	149321830	+	0	NA	intron (NM_015093, intron 1 of 8)	intron (NM_015093, intron 1 of 8)	3075	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
232535	chr9	136337351	136338130	+	0	NA	intron (NM_015597, intron 5 of 8)	intron (NM_015597, intron 5 of 8)	10201	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
219414	chr8	70668301	70670180	+	0	NA	promoter-TSS (NM_001011720)	promoter-TSS (NM_001011720)	-55	NM_016027	51110		NM_016027	ENSG00000147592	LACTB2	CGI-83	lactamase beta 2	protein-coding
108119	chr18	62324201	62324400	+	0	NA	promoter-TSS (NM_001270949)	promoter-TSS (NM_001270949)	-987	NM_001270949	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
238117	chrX	136649101	136649300	+	0	NA	intron (NM_000074, intron 1 of 4)	intron (NM_000074, intron 1 of 4)	1042	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
170534	chr3	186643651	186643750	+	0	NA	intron (NM_014375, intron 3 of 6)	intron (NM_014375, intron 3 of 6)	3301	NM_001375591	26998		NM_014375	ENSG00000090512	FETUB	16G2|Gugu|IRL685	fetuin B	protein-coding
166411	chr3	113698701	113699400	+	0	NA	Intergenic	Intergenic	-2408	NM_001009899	205717		NM_001009899	ENSG00000176542	USF3	KIAA2018	upstream transcription factor family member 3	protein-coding
228714	chr9	109101051	109101350	+	0	NA	intron (NM_032012, intron 3 of 17)	intron (NM_032012, intron 3 of 17)	18747	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
140456	chr2	233163771	233164480	+	0	NA	intron (NM_001017915, intron 12 of 26).2	intron (NM_001017915, intron 12 of 26).2	-87446	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
13209	chr1	112640521	112641000	+	0	NA	intron (NM_006135, intron 1 of 9)	SVA_D|Retroposon|SVA	20928	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
4527	chr1	21852451	21852750	+	0	NA	intron (NM_001291860, intron 52 of 96)	intron (NM_001291860, intron 52 of 96)	40335	NM_001013693	401944		NM_001013693	ENSG00000187942	LDLRAD2	-	low density lipoprotein receptor class A domain containing 2	protein-coding
3169	chr1	12936451	12936550	+	0	NA	Intergenic	Intergenic	11080	NM_001010889	440561		NM_001010889	ENSG00000232423	PRAMEF6	-	PRAME family member 6	protein-coding
50282	chr12	46364821	46365430	+	0	NA	exon (NM_018976, exon 8 of 16)	exon (NM_018976, exon 8 of 16)	7648	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
91885	chr17	7262331	7264100	+	0	NA	promoter-TSS (NM_001307)	promoter-TSS (NM_001307)	-22	NM_001185022	1366		NM_001307	ENSG00000181885	CLDN7	CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1	claudin 7	protein-coding
17227	chr1	156285471	156285850	+	0	NA	non-coding (NR_026678, exon 2 of 4)	non-coding (NR_026678, exon 2 of 4)	1335	NM_032323	84283		NM_032323	ENSG00000163472	TMEM79	MATT	transmembrane protein 79	protein-coding
63703	chr14	21105471	21105630	+	0	NA	promoter-TSS (NM_001102454)	promoter-TSS (NM_001102454)	-846	NM_001102454	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
115274	chr19	14554401	14555380	+	0	NA	intron (NM_001321170, intron 2 of 13)	AluSc|SINE|Alu	17176	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
180558	chr5	14671401	14672730	+	0	NA	intron (NM_138348, intron 1 of 6)	MIR|SINE|MIR	7347	NM_138348	90268		NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM|IMD107	OTU deubiquitinase with linear linkage specificity	protein-coding
146162	chr20	48724821	48725080	+	0	NA	intron (NM_020820, intron 5 of 39)	intron (NM_020820, intron 5 of 39)	103049	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138662	chr2	212953421	212953680	+	0	NA	Intergenic	LTR16B1|LTR|ERVL	-27214	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
221784	chr8	127951451	127951550	+	0	NA	intron (NR_003367, intron 3 of 8)	intron (NR_003367, intron 3 of 8)	-2777	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
46777	chr11	129992401	129992630	+	0	NA	intron (NM_199437, intron 1 of 20)	intron (NM_199437, intron 1 of 20)	-10109	NR_024233	440072		NM_001007543		PRDM10-DT	C11orf37|LINC00167|NCRNA00167	PRDM10 divergent transcript	ncRNA
10794	chr1	77681571	77683000	+	0	NA	intron (NR_164775, intron 1 of 14)	intron (NR_164775, intron 1 of 14)	373	NM_001376155	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
112551	chr19	6542401	6542900	+	0	NA	Intergenic	Intergenic	11624	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
185916	chr5	132826971	132827330	+	0	NA	promoter-TSS (NM_133456)	promoter-TSS (NM_133456)	-840	NM_133456	134549		NM_133456	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
56906	chr12	120367121	120367430	+	0	NA	intron (NM_002442, intron 4 of 14)	intron (NM_002442, intron 4 of 14)	1889	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
202050	chr6	154154451	154155180	+	0	NA	3' UTR (NM_001130699, exon 13 of 13)	3' UTR (NM_001130699, exon 13 of 13)	65053	NM_001285527	4988		NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor mu 1	protein-coding
107848	chr18	54377801	54378380	+	0	NA	intron (NM_173529, intron 7 of 7)	intron (NM_173529, intron 7 of 7)	20173	NR_110234	162681		NM_173529	ENSG00000166845	C18orf54	LAS2	chromosome 18 open reading frame 54	protein-coding
122504	chr19	49584921	49585650	+	0	NA	intron (NM_000951, intron 4 of 6)	intron (NM_000951, intron 4 of 6)	3969	NM_001316335	5639		NM_000951	ENSG00000126460	PRRG2	PRGP2	proline rich and Gla domain 2	protein-coding
212262	chr7	122143871	122144750	+	0	NA	promoter-TSS (NM_005763)	promoter-TSS (NM_005763)	-61	NM_005763	10157		NM_005763	ENSG00000008311	AASS	LKR/SDH|LKRSDH|LORSDH	aminoadipate-semialdehyde synthase	protein-coding
5255	chr1	25026401	25026700	+	0	NA	Intergenic	Intergenic	3047	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
25420	chr10	6564321	6564880	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	15676	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
81832	chr16	11574601	11574880	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	11633	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
99453	chr17	50139601	50140850	+	0	NA	exon (NM_032595, exon 5 of 10)	exon (NM_032595, exon 5 of 10)	-10065	NM_174920	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
20719	chr1	200871671	200871830	+	0	NA	Intergenic	Intergenic	-1231	NM_005298	2848		NM_005298	ENSG00000170128	GPR25	-	G protein-coupled receptor 25	protein-coding
120169	chr19	42248301	42249680	+	0	NA	exon (NM_006494, exon 4 of 4)	exon (NM_006494, exon 4 of 4)	4909	NM_001308402	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
171736	chr3	197958551	197958650	+	0	NA	intron (NM_032263, intron 2 of 11)	intron (NM_032263, intron 2 of 11)	1391	NM_032263	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
57520	chr12	122129971	122130130	+	0	NA	exon (NM_014938, exon 6 of 17)	exon (NM_014938, exon 6 of 17)	-37669	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
215077	chr7	154575371	154575530	+	0	NA	intron (NM_001290252, intron 5 of 23)	(TG)n|Simple_repeat|Simple_repeat	270291	NM_001290252	1804		NM_001936	ENSG00000130226	DPP6	DPL1|DPPX|MRD33|VF2	dipeptidyl peptidase like 6	protein-coding
109456	chr19	772171	772600	+	0	NA	Intergenic	FLAM_C|SINE|Alu	21273	NR_135168	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
37908	chr11	34087351	34087650	+	0	NA	intron (NM_203364, intron 11 of 17)	AluYa5|SINE|Alu	-18129	NM_001144030	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
24160	chr1	235864571	235865300	+	0	NA	intron (NM_001301365, intron 1 of 52)	AluJb|SINE|Alu	1971	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
152457	chr22	20697351	20698550	+	0	NA	Intergenic	Intergenic	-3164	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
97278	chr17	43029251	43029350	+	0	NA	3' UTR (NM_005440, exon 5 of 5)	3' UTR (NM_005440, exon 5 of 5)	4069	NM_005440	8153		NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
237906	chrX	131793171	131793400	+	0	NA	intron (NR_026975, intron 5 of 12)	intron (NR_026975, intron 5 of 12)	37358	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
191305	chr6	6697001	6697200	+	0	NA	Intergenic	Intergenic	-74274	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
228613	chr9	105415351	105415880	+	0	NA	intron (NM_001330731, intron 15 of 15)	intron (NM_001330731, intron 15 of 15)	-32419	NM_001287192	83856		NM_031919	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1 like	protein-coding
24408	chr1	243253001	243253550	+	0	NA	intron (NM_001042405, intron 1 of 18).2	intron (NM_001042405, intron 1 of 18).2	2006	NM_014812	9859		NM_014812	ENSG00000143702	CEP170	FAM68A|KAB|KIAA0470	centrosomal protein 170	protein-coding
197493	chr6	75610801	75611350	+	0	NA	intron (NM_015571, intron 1 of 23)	intron (NM_015571, intron 1 of 23)	9195	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
182626	chr5	66828421	66829250	+	0	NA	promoter-TSS (NM_015183)	promoter-TSS (NM_015183)	62	NM_015183	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
166597	chr3	119218901	119219500	+	0	NA	intron (NM_212543, intron 6 of 8)	intron (NM_212543, intron 6 of 8)	-7286	NR_046574	100874201		NR_046574	ENSG00000240254	B4GALT4-AS1	-	B4GALT4 antisense RNA 1	ncRNA
139543	chr2	224778521	224779380	+	0	NA	intron (NM_001363762, intron 50 of 55)	intron (NM_001363762, intron 50 of 55)	168099	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
136740	chr2	181275321	181276050	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	29967	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
220586	chr8	100860421	100860880	+	0	NA	Intergenic	Intergenic	89921	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
155859	chr22	39470721	39470980	+	0	NA	intron (NM_002409, intron 1 of 1)	MIRb|SINE|MIR	5972	NR_126469	104502417		NR_126469	ENSG00000227188	MGAT3-AS1	TapSAKI	MGAT3 antisense RNA 1	ncRNA
24195	chr1	236001951	236002450	+	0	NA	intron (NM_002508, intron 12 of 19)	intron (NM_002508, intron 12 of 19)	62890	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
1152	chr1	2196871	2197700	+	0	NA	intron (NM_001282670, intron 5 of 7)	intron (NM_001282670, intron 5 of 7)	-2510	NR_046427	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
237656	chrX	124268671	124268830	+	0	NA	Intergenic	AluSz|SINE|Alu	-63910	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
221683	chr8	126499571	126500330	+	0	NA	Intergenic	LTR33B|LTR|ERVL	58528	NM_174911	157638		NM_174911	ENSG00000168672	LRATD2	BCMP101|FAM84B|NSE2	LRAT domain containing 2	protein-coding
123937	chr19	55376321	55377280	+	0	NA	promoter-TSS (NM_139172)	promoter-TSS (NM_139172)	-26	NM_139172	147744		NM_139172	ENSG00000160472	TMEM190	MDAC1	transmembrane protein 190	protein-coding
224003	chr9	2159451	2160130	+	0	NA	intron (NM_001289400, intron 1 of 7)	intron (NM_001289400, intron 1 of 7)	1334	NM_001289400	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
201762	chr6	149944701	149945650	+	0	NA	intron (NM_025217, intron 1 of 4)	intron (NM_025217, intron 1 of 4)	3161	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
131578	chr2	96838201	96838400	+	0	NA	3' UTR (NM_144994, exon 9 of 9)	3' UTR (NM_144994, exon 9 of 9)	5721	NM_144994	200539		NM_144994	ENSG00000163126	ANKRD23	DARP|MARP3	ankyrin repeat domain 23	protein-coding
188844	chr5	159180951	159181630	+	0	NA	intron (NM_001199383, intron 4 of 10)	intron (NM_001199383, intron 4 of 10)	26358	NM_001199382	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
225405	chr9	35051351	35052250	+	0	NA	Intergenic	Intergenic	9560	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
137150	chr2	191066271	191067380	+	0	NA	intron (NM_003151, intron 6 of 23)	intron (NM_003151, intron 6 of 23)	45299	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
164109	chr3	56679051	56679350	+	0	NA	intron (NM_001365638, intron 1 of 22)	intron (NM_001365638, intron 1 of 22)	4037	NM_001363940	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
122165	chr19	48893751	48894580	+	0	NA	intron (NM_003323, intron 6 of 12)	AluSz6|SINE|Alu	4579	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
105321	chr17	82583651	82584630	+	0	NA	exon (NM_004514, exon 6 of 9)	exon (NM_004514, exon 6 of 9)	64304	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
9283	chr1	46405951	46406650	+	0	NA	exon (NM_001441, exon 7 of 15)	exon (NM_001441, exon 7 of 15)	11983	NM_001441	2166		NM_001441	ENSG00000117480	FAAH	FAAH-1|FAAH1|PSAB	fatty acid amide hydrolase	protein-coding
9335	chr1	46612851	46613150	+	0	NA	exon (NM_145279, exon 2 of 4)	exon (NM_145279, exon 2 of 4)	2133	NM_145279	148932		NM_145279	ENSG00000142961	MOB3C	MOB1E|MOBKL2C	MOB kinase activator 3C	protein-coding
183433	chr5	78647501	78647700	+	0	NA	intron (NM_005779, intron 1 of 4)	intron (NM_005779, intron 1 of 4)	1172	NM_005779	10184		NM_005779	ENSG00000145685	LHFPL2	-	LHFPL tetraspan subfamily member 2	protein-coding
159862	chr3	16724021	16724280	+	0	NA	Intergenic	Intergenic	-118727	NM_001351	1618		NM_001351	ENSG00000092345	DAZL	DAZH|DAZL1|DAZLA|SPGYLA	deleted in azoospermia like	protein-coding
6378	chr1	27877471	27878230	+	0	NA	intron (NM_001039477, intron 2 of 3)	MIR|SINE|MIR	5306	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
220807	chr8	102774321	102774580	+	0	NA	Intergenic	LTR33|LTR|ERVL	-32372	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
43600	chr11	83167301	83167780	+	0	NA	exon (NM_001346413, exon 7 of 16)	exon (NM_001346413, exon 7 of 16)	10409	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
70124	chr14	100255501	100255900	+	0	NA	intron (NM_003403, intron 1 of 4)	MER97b|DNA|hAT-Tip100	16556	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
84847	chr16	31131071	31131480	+	0	NA	TTS (NM_002773)	TTS (NM_002773)	4452	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
79916	chr16	1718721	1718980	+	0	NA	intron (NM_001318852, intron 1 of 31)	intron (NM_001318852, intron 1 of 31)	12655	NM_001040439	23162		NM_015133	ENSG00000138834	MAPK8IP3	JIP-3|JIP3|JSAP1|NEDBA|SYD2|syd	mitogen-activated protein kinase 8 interacting protein 3	protein-coding
224309	chr9	6644351	6646430	+	0	NA	exon (NM_000170, exon 1 of 25)	exon (NM_000170, exon 1 of 25)	339	NM_000170	2731		NM_000170	ENSG00000178445	GLDC	GCE|GCE1|GCSP|HYGN1	glycine decarboxylase	protein-coding
179090	chr4	168475701	168476280	+	0	NA	intron (NM_001291510, intron 1 of 29)	MLT1A|LTR|ERVL-MaLR	4502	NM_001345927	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
45006	chr11	116998451	116998750	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	99828	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
48023	chr12	6942401	6942780	+	0	NA	promoter-TSS (NM_001301836)	promoter-TSS (NM_001301836)	-848	NM_001301836	113246		NM_138425	ENSG00000111678	C12orf57	C10|GRCC10	chromosome 12 open reading frame 57	protein-coding
57671	chr12	122773951	122775680	+	0	NA	intron (NR_027918, intron 1 of 12)	AluY|SINE|Alu	243	NM_201435	84660		NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|SPGF67|TSP-NY	coiled-coil domain containing 62	protein-coding
68489	chr14	88013421	88014000	+	0	NA	3' UTR (NM_003608, exon 2 of 2)	3' UTR (NM_003608, exon 2 of 2)	8575	NM_003608	8477		NM_003608	ENSG00000140030	GPR65	TDAG8|hTDAG8	G protein-coupled receptor 65	protein-coding
139270	chr2	219461151	219461450	+	0	NA	intron (NM_001173476, intron 1 of 4)	intron (NM_001173476, intron 1 of 4)	488	NM_001173476	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
44411	chr11	103872121	103872380	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	22344	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
56337	chr12	112937201	112937480	+	0	NA	Intergenic	Intergenic	-1134	NM_006187	4940		NM_006187	ENSG00000111331	OAS3	p100|p100OAS	2'-5'-oligoadenylate synthetase 3	protein-coding
150758	chr21	43784471	43784830	+	0	NA	Intergenic	AluJo|SINE|Alu	-4927	NM_003683	8568		NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
12346	chr1	101131251	101131550	+	0	NA	Intergenic	Intergenic	105128	NR_104626	101928370		NR_104626		S1PR1-DT	LISPR1	S1PR1 divergent transcript	ncRNA
39651	chr11	61584971	61585450	+	0	NA	Intergenic	Intergenic	-3284	NR_110189	101927495		NR_110189	ENSG00000250230	LOC101927495	-	uncharacterized LOC101927495	ncRNA
114632	chr19	12990171	12990330	+	0	NA	Intergenic	Intergenic	-5225	NM_002501	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
223278	chr8	143731421	143731830	+	0	NA	intron (NM_198488, intron 1 of 4)	intron (NM_198488, intron 1 of 4)	1528	NR_039810	100616318		NR_039810	ENSG00000265660	MIR4664	-	microRNA 4664	ncRNA
171113	chr3	195522201	195523230	+	0	NA	intron (NR_133014, intron 3 of 4)	intron (NR_133014, intron 3 of 4)	20610	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
128730	chr2	61882301	61882900	+	0	NA	intron (NM_001256721, intron 2 of 12)	AluJo|SINE|Alu	-5791	NM_001371765	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
71274	chr14	105246471	105246830	+	0	NA	intron (NM_001242788, intron 4 of 16)	AluSx1|SINE|Alu	1235	NM_145685	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
2576	chr1	9801601	9801850	+	0	NA	intron (NM_014944, intron 1 of 17)	AluSp|SINE|Alu	22240	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
4825	chr1	23617151	23617850	+	0	NA	Intergenic	Intergenic	-9834	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
26267	chr10	14742821	14743080	+	0	NA	intron (NM_001282695, intron 1 of 5)	L2c|LINE|L2	31947	NM_001282695	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
178183	chr4	142388951	142389550	+	0	NA	intron (NR_169599, intron 3 of 22)	AluSg4|SINE|Alu	13883	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
83598	chr16	28181421	28181750	+	0	NA	intron (NM_015171, intron 1 of 23)	AluJr|SINE|Alu	30380	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
175108	chr4	54384751	54384850	+	0	NA	Intergenic	Intergenic	51908	NR_147160	105377656		NR_147160		LINC02283	-	long intergenic non-protein coding RNA 2283	ncRNA
42745	chr11	72713001	72713400	+	0	NA	exon (NM_001040118, exon 5 of 35)	exon (NM_001040118, exon 5 of 35)	9140	NR_161388	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
172207	chr4	1292201	1293000	+	0	NA	intron (NR_123716, intron 1 of 6)	MER20|DNA|hAT-Charlie	2709	NM_001297431	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
217032	chr8	23245101	23245500	+	0	NA	intron (NM_152272, intron 1 of 10)	L1MC|LINE|L1	-1341	NM_001363183	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
197215	chr6	63654571	63654930	+	0	NA	intron (NM_001370348, intron 2 of 15)	L3|LINE|CR1	8224	NM_015153	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
57869	chr12	123380071	123380400	+	0	NA	Intergenic	AluSp|SINE|Alu	-3897	NM_001324505	387893		NM_020382	ENSG00000183955	KMT5A	PR-Set7|PR/SET07|SET07|SET8|SETD8	lysine methyltransferase 5A	protein-coding
71754	chr15	20978151	20978390	+	0	NA	intron (NR_040094, intron 3 of 4)	intron (NR_040094, intron 3 of 4)	-25007	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
33164	chr10	112823651	112823750	+	0	NA	non-coding (NR_120684, exon 1 of 1)	non-coding (NR_120684, exon 1 of 1)	204	NR_120684	103344931		NR_120684	ENSG00000260917	LOC103344931	-	uncharacterized LOC103344931	ncRNA
60597	chr13	42009151	42009250	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-30836	NM_001204504	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
49799	chr12	31961751	31962450	+	0	NA	intron (NM_018169, intron 2 of 5)	AluSz6|SINE|Alu	2685	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
169272	chr3	157897351	157897450	+	0	NA	Intergenic	L1PA3|LINE|L1	208763	NM_006884	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
43479	chr11	78201971	78202130	+	0	NA	intron (NM_020798, intron 6 of 10)	L1MEd|LINE|L1	13131	NM_020798	57558		NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
55545	chr12	105427921	105428180	+	0	NA	Intergenic	Intergenic	97359	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
92468	chr17	8709171	8709330	+	0	NA	Intergenic	Intergenic	35586	NM_144681	146849		NM_144681	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
1540	chr1	3424651	3425030	+	0	NA	intron (NM_199454, intron 12 of 16)	intron (NM_199454, intron 12 of 16)	-29825	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
92100	chr17	7571321	7571580	+	0	NA	non-coding (NR_037926, exon 11 of 22)	non-coding (NR_037926, exon 11 of 22)	-1375	NM_001416	1973		NM_001416	ENSG00000161960	EIF4A1	DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I	eukaryotic translation initiation factor 4A1	protein-coding
227352	chr9	89473201	89473400	+	0	NA	intron (NM_001371194, intron 1 of 15)	AluJr|SINE|Alu	6590	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
114555	chr19	12889051	12889350	+	0	NA	Intergenic	Intergenic	-1929	NR_102316	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
16884	chr1	155850921	155851550	+	0	NA	intron (NM_001282861, intron 2 of 20)	AluY|SINE|Alu	5979	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
63226	chr13	113881101	113881300	+	0	NA	intron (NR_047035, intron 2 of 2)	intron (NR_047035, intron 2 of 2)	2286	NR_047035	100874178		NR_047035	ENSG00000226921	LINC00454	-	long intergenic non-protein coding RNA 454	ncRNA
168948	chr3	152372701	152372930	+	0	NA	intron (NM_001376837, intron 2 of 9)	L1PA7|LINE|L1	-31825	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
174503	chr4	39964271	39964430	+	0	NA	intron (NM_001100399, intron 2 of 32)	L1MC4|LINE|L1	13561	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
87573	chr16	72482721	72482980	+	0	NA	intron (NR_159371, intron 3 of 5)	intron (NR_159371, intron 3 of 5)	182120	NR_126330	101927957		NR_126330	ENSG00000261008	LINC01572	-	long intergenic non-protein coding RNA 1572	ncRNA
190130	chr5	178046921	178047180	+	0	NA	non-coding (NR_159407, exon 10 of 10)	non-coding (NR_159407, exon 10 of 10)	37853	NR_159407	653316		NM_001079527	ENSG00000204677	FAM153CP	FAM153C|NY-REN-7-like	protein FAM153C	pseudo
120237	chr19	42378401	42378800	+	0	NA	3' UTR (NM_001271938, exon 42 of 42)	3' UTR (NM_001271938, exon 42 of 42)	11697	NM_032488	84518		NM_032488	ENSG00000105427	CNFN	PLAC8L2	cornifelin	protein-coding
30045	chr10	73810621	73812430	+	0	NA	promoter-TSS (NM_003635)	promoter-TSS (NM_003635)	73	NM_001330107	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
221298	chr8	123016551	123016850	+	0	NA	intron (NM_001363963, intron 6 of 6)	MIR|SINE|MIR	9072	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
4877	chr1	23780571	23780730	+	0	NA	intron (NM_020362, intron 3 of 5)	AluSx|SINE|Alu	2232	NM_020362	57095		NM_020362	ENSG00000057757	PITHD1	C1orf128|HT014|TXNL1CL	PITH domain containing 1	protein-coding
170086	chr3	182979751	182981630	+	0	NA	promoter-TSS (NM_020640)	promoter-TSS (NM_020640)	-152	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
154074	chr22	30743471	30743900	+	0	NA	intron (NM_030758, intron 2 of 13)	(ATAA)n|Simple_repeat|Simple_repeat	12128	NR_036171	100422912		NR_036171	ENSG00000264661	MIR3200	mir-3200	microRNA 3200	ncRNA
88191	chr16	81745771	81746780	+	0	NA	Intergenic	Intergenic	-33016	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
133566	chr2	121478371	121479000	+	0	NA	intron (NM_001142274, intron 8 of 37)	(AC)n|Simple_repeat|Simple_repeat	-52195	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
128366	chr2	55007971	55008130	+	0	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	2222	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
76362	chr15	74593421	74593680	+	0	NA	intron (NM_006465, intron 8 of 8)	intron (NM_006465, intron 8 of 8)	-14822	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
198835	chr6	109224521	109224780	+	0	NA	intron (NR_152435, intron 11 of 45)	intron (NR_152435, intron 11 of 45)	58819	NR_152435	221262		NM_173671	ENSG00000203799	CCDC162P	C6orf183|C6orf184|C6orf185|CCDC162	coiled-coil domain containing 162, pseudogene	pseudo
210354	chr7	99563751	99564100	+	0	NA	exon (NM_001085367, exon 5 of 5)	exon (NM_001085367, exon 5 of 5)	5091	NM_001363334	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
220301	chr8	98163621	98164100	+	0	NA	Intergenic	Intergenic	46020	NM_015029	10940		NM_015029	ENSG00000104356	POP1	ANXD2	POP1 homolog, ribonuclease P/MRP subunit	protein-coding
56139	chr12	111298601	111299080	+	0	NA	intron (NM_015267, intron 9 of 21)	L2b|LINE|L2	-5302	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
235829	chrX	49287701	49287900	+	0	NA	3' UTR (NM_033215, exon 4 of 4)	3' UTR (NM_033215, exon 4 of 4)	-15846	NM_001098413	102724473		NM_001098413	ENSG00000215274	GAGE10	GAGE-10	G antigen 10	protein-coding
105827	chr18	2974471	2975230	+	0	NA	intron (NM_001375808, intron 1 of 19)	AluJb|SINE|Alu	-28227	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
69005	chr14	91495371	91496130	+	0	NA	intron (NR_158976, intron 2 of 16)	AluJr4|SINE|Alu	14560	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
117939	chr19	33175901	33177910	+	0	NA	Intergenic	CpG	-17425	NM_002333	4037		NM_002333	ENSG00000130881	LRP3	-	LDL receptor related protein 3	protein-coding
157626	chr22	46073371	46073730	+	0	NA	Intergenic	Intergenic	-2529	NR_148973	642648		NR_148973		LINC02939	-	long intergenic non-protein coding RNA 2939	ncRNA
75498	chr15	66390521	66391430	+	0	NA	intron (NM_002755, intron 1 of 10)	L2b|LINE|L2	4063	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
220034	chr8	91069401	91070900	+	0	NA	promoter-TSS (NR_110439)	promoter-TSS (NR_110439)	39	NR_110438	100506365		NR_110438	ENSG00000253738	OTUD6B-AS1	GS1-251I9.4	OTUD6B antisense RNA 1 (head to head)	ncRNA
44150	chr11	96187821	96188100	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-153478	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
21500	chr1	205741401	205741600	+	0	NA	intron (NM_022731, intron 1 of 6)	intron (NM_022731, intron 1 of 6)	8682	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
189659	chr5	176359471	176359630	+	0	NA	non-coding (NR_109797, exon 2 of 5)	non-coding (NR_109797, exon 2 of 5)	2214	NM_020444	57179		NM_020444	ENSG00000122203	KIAA1191	p33MONOX|p60MONOX	KIAA1191	protein-coding
187457	chr5	142121371	142121530	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	12671	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
119840	chr19	41378271	41379050	+	0	NA	intron (NM_001369864, intron 3 of 4)	intron (NM_001369864, intron 3 of 4)	1396	NM_001042595	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
103187	chr17	77453301	77454290	+	0	NA	promoter-TSS (NM_001293698)	promoter-TSS (NM_001293698)	-232	NM_001293698	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
146934	chr20	51800201	51800680	+	0	NA	intron (NM_001318031, intron 1 of 3)	intron (NM_001318031, intron 1 of 3)	2081	NM_001318031	57167		NM_020436	ENSG00000101115	SALL4	DRRS|HSAL4|IVIC|ZNF797	spalt like transcription factor 4	protein-coding
233189	chr9	137202771	137202930	+	0	NA	Intergenic	AluSg|SINE|Alu	-2109	NM_001128228	286262		NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79	taperin	protein-coding
27445	chr10	31920671	31921400	+	0	NA	intron (NM_018287, intron 1 of 19)	AluJb|SINE|Alu	7796	NM_001270698	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
88898	chr16	87767351	87767680	+	0	NA	intron (NR_120309, intron 3 of 3)	intron (NR_120309, intron 3 of 3)	-1529	NM_001184856	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
119375	chr19	40189501	40189700	+	0	NA	Intergenic	AluJo|SINE|Alu	-1826	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
102429	chr17	75671051	75671150	+	0	NA	intron (NM_001301839, intron 2 of 9)	intron (NM_001301839, intron 2 of 9)	3762	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
232427	chr9	136097171	136097330	+	0	NA	Intergenic	AluSx|SINE|Alu	-1961	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
75105	chr15	64464771	64465200	+	0	NA	intron (NM_015042, intron 1 of 9)	intron (NM_015042, intron 1 of 9)	4407	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
189909	chr5	177361521	177362180	+	0	NA	intron (NM_006480, intron 1 of 14)	intron (NM_006480, intron 1 of 14)	3926	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
34945	chr11	450801	451730	+	0	NA	intron (NR_138046, intron 1 of 12)	intron (NR_138046, intron 1 of 12)	986	NM_001329545	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
181041	chr5	35921851	35922150	+	0	NA	intron (NM_144647, intron 1 of 4)	intron (NM_144647, intron 1 of 4)	16622	NM_001042625	133690		NM_144647	ENSG00000152611	CAPSL	-	calcyphosine like	protein-coding
220978	chr8	115422851	115423300	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	244938	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
93293	chr17	18145451	18145950	+	0	NA	intron (NM_016239, intron 28 of 64)	AluJb|SINE|Alu	-28139	NR_164159	105371566		NR_164159		LOC105371566	-	uncharacterized LOC105371566	ncRNA
22087	chr1	211471201	211471600	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	20762	NM_001164688	343035		NM_183059	ENSG00000198570	RD3	C1orf36|LCA12	RD3 regulator of GUCY2D	protein-coding
128398	chr2	55133551	55134880	+	0	NA	intron (NM_001321904, intron 1 of 9)	MER41B|LTR|ERV1	3616	NM_001321904	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
216991	chr8	23105071	23105830	+	0	NA	intron (NM_003841, intron 1 of 4)	intron (NM_003841, intron 1 of 4)	2529	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
133598	chr2	121738601	121739400	+	0	NA	Intergenic	Intergenic	-2125	NM_032390	84365		NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
120010	chr19	41934621	41935400	+	0	NA	Intergenic	Intergenic	6190	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
97758	chr17	44482751	44483700	+	0	NA	intron (NM_001304940, intron 1 of 9)	intron (NM_001304940, intron 1 of 9)	20181	NM_001002909	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
127953	chr2	46554871	46555480	+	0	NA	intron (NM_012249, intron 2 of 4)	intron (NM_012249, intron 2 of 4)	-12598	NM_001371283	90423		NM_080653	ENSG00000250565	ATP6V1E2	ATP6E1|ATP6EL2|ATP6V1EL2|VMA4	ATPase H+ transporting V1 subunit E2	protein-coding
15483	chr1	150370421	150370930	+	0	NA	intron (NM_015203, intron 1 of 10)	AluSz6|SINE|Alu	6564	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
31452	chr10	96025621	96025950	+	0	NA	intron (NM_001159747, intron 10 of 11)	intron (NM_001159747, intron 10 of 11)	-17798	NM_019084	54619		NM_019084	ENSG00000107443	CCNJ	bA690P14.1	cyclin J	protein-coding
131986	chr2	100322201	100322550	+	0	NA	5' UTR (NM_198461, exon 1 of 12)	5' UTR (NM_198461, exon 1 of 12)	126	NM_001371783	164832		NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
67388	chr14	69783321	69784300	+	0	NA	intron (NM_003049, intron 2 of 4)	L2c|LINE|L2	13431	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
160101	chr3	19102671	19103550	+	0	NA	Intergenic	L1PA2|LINE|L1	-45400	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
168660	chr3	150495401	150495880	+	0	NA	Intergenic	Intergenic	50856	NM_014445	27230		NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding
14768	chr1	146036501	146037400	+	0	NA	Intergenic	Intergenic	-15215	NM_145277	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
154938	chr22	37228321	37229600	+	0	NA	intron (NM_002872, intron 5 of 6)	intron (NM_002872, intron 5 of 6)	15309	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
105545	chr17	83199371	83199530	+	0	NA	Intergenic	Intergenic	-27447	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
161519	chr3	42597451	42597950	+	0	NA	TTS (NM_001370300)	TTS (NM_001370300)	-2986	NM_005385	4820		NM_005385	ENSG00000114857	NKTR	CypNK|p104	natural killer cell triggering receptor	protein-coding
86950	chr16	68117171	68117330	+	0	NA	intron (NM_173165, intron 1 of 9)	intron (NM_173165, intron 1 of 9)	31880	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
185662	chr5	131595121	131595900	+	0	NA	intron (NM_016340, intron 3 of 27)	L1MA6|LINE|L1	39719	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
31234	chr10	91811071	91811230	+	0	NA	intron (NM_025235, intron 1 of 26)	AluSx3|SINE|Alu	12724	NM_025235	80351		NM_025235	ENSG00000107854	TNKS2	ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6	tankyrase 2	protein-coding
14539	chr1	144871271	144871430	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	153179	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
226694	chr9	75103621	75104030	+	0	NA	intron (NM_012383, intron 1 of 9)	AluJr|SINE|Alu	15311	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
124161	chr19	56107771	56108600	+	0	NA	intron (NM_001351682, intron 1 of 1)	intron (NM_001351682, intron 1 of 1)	13110	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
67512	chr14	70972071	70973500	+	0	NA	intron (NM_014982, intron 5 of 35)	intron (NM_014982, intron 5 of 35)	65326	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
198769	chr6	108798301	108798930	+	0	NA	Intergenic	Intergenic	46961	NR_033376	387111		NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
5833	chr1	26700871	26701380	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	5110	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
127603	chr2	42961401	42961800	+	0	NA	Intergenic	Intergenic	77943	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
168589	chr3	149088301	149088730	+	0	NA	intron (NR_046648, intron 1 of 2)	AluSx|SINE|Alu	-1961	NM_001318934	6596		NM_003071	ENSG00000071794	HLTF	HIP116|HIP116A|HLTF1|RNF80|SMARCA3|SNF2L3|ZBU1	helicase like transcription factor	protein-coding
100425	chr17	60652521	60652780	+	0	NA	intron (NM_003620, intron 4 of 5)	L1MA4|LINE|L1	-25201	NM_001320470	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
110702	chr19	2297071	2297680	+	0	NA	intron (NM_001101391, intron 1 of 1)	AluY|SINE|Alu	10779	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
138916	chr2	218133001	218133380	+	0	NA	intron (NM_001168298, intron 3 of 3)	intron (NM_001168298, intron 3 of 3)	7162	NM_001557	3579		NM_001557	ENSG00000180871	CXCR2	CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB|WHIMS2	C-X-C motif chemokine receptor 2	protein-coding
134056	chr2	131413221	131413480	+	0	NA	Intergenic	Intergenic	10449	NR_036499	389043		NR_036499		LINC01120	-	long intergenic non-protein coding RNA 1120	ncRNA
146078	chr20	47510551	47510850	+	0	NA	intron (NM_181659, intron 1 of 22)	AluJo|SINE|Alu	8813	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
167152	chr3	128055421	128055680	+	0	NA	exon (NM_013336, exon 3 of 12)	exon (NM_013336, exon 3 of 12)	3113	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
73340	chr15	42057051	42057800	+	0	NA	Intergenic	Intergenic	-6722	NM_001206670	123745		NM_198442	ENSG00000188089	PLA2G4E	-	phospholipase A2 group IVE	protein-coding
77666	chr15	85580071	85580230	+	0	NA	exon (NM_006738, exon 7 of 37)	exon (NM_006738, exon 7 of 37)	-39800	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
166742	chr3	121938071	121938230	+	0	NA	intron (NM_021082, intron 19 of 21)	L1PA3|LINE|L1	43749	NM_001145998	6565		NM_021082	ENSG00000163406	SLC15A2	PEPT2	solute carrier family 15 member 2	protein-coding
202444	chr6	158014771	158015230	+	0	NA	intron (NM_003898, intron 1 of 26)	intron (NM_003898, intron 1 of 26)	-2093	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
11966	chr1	94026001	94026200	+	0	NA	intron (NM_000350, intron 30 of 49)	intron (NM_000350, intron 30 of 49)	95048	NM_000350	24		NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
4575	chr1	22064301	22064980	+	0	NA	intron (NM_044472, intron 1 of 5)	intron (NM_044472, intron 1 of 5)	11931	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
171360	chr3	196068521	196069200	+	0	NA	intron (NM_001313966, intron 5 of 16)	AluSx1|SINE|Alu	13230	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
52194	chr12	54354951	54355250	+	0	NA	intron (NR_120487, intron 1 of 3)	intron (NR_120487, intron 1 of 3)	1409	NR_120486	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
113065	chr19	8196651	8196750	+	0	NA	Intergenic	Intergenic	-12670	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
230728	chr9	128821051	128821150	+	0	NA	3' UTR (NM_016390, exon 12 of 12)	3' UTR (NM_016390, exon 12 of 12)	2600	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
48393	chr12	9638621	9639100	+	0	NA	intron (NR_046448, intron 1 of 4)	(T)n|Simple_repeat|Simple_repeat	-4008	NR_046449	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
2826	chr1	11052801	11053300	+	0	NA	Intergenic	Intergenic	-5811	NM_006610	10747		NM_006610	ENSG00000009724	MASP2	MAP-2|MAP19|MASP-2|MASP1P1|sMAP	MBL associated serine protease 2	protein-coding
46257	chr11	124750921	124751180	+	0	NA	intron (NM_014312, intron 2 of 6)	intron (NM_014312, intron 2 of 6)	1205	NM_001329920	23584		NM_014312	ENSG00000019102	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
23048	chr1	226606871	226607230	+	0	NA	3' UTR (NM_001003665, exon 4 of 4)	3' UTR (NM_001003665, exon 4 of 4)	58286	NM_001003665	375057		NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
117751	chr19	29667601	29668430	+	0	NA	intron (NM_024310, intron 1 of 1)	intron (NM_024310, intron 1 of 1)	2554	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
127704	chr2	43225801	43228280	+	0	NA	promoter-TSS (NR_027251)	promoter-TSS (NR_027251)	-171	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
221266	chr8	122791821	122792280	+	0	NA	intron (NM_014943, intron 1 of 3)	L1MB7|LINE|L1	10395	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
149425	chr21	31283001	31283400	+	0	NA	intron (NM_001353694, intron 2 of 27)	intron (NM_001353694, intron 2 of 27)	61154	NM_001353694	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
229590	chr9	123375451	123376080	+	0	NA	intron (NM_173689, intron 12 of 12)	intron (NM_173689, intron 12 of 12)	6986	NR_104603	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
177864	chr4	128298821	128299080	+	0	NA	Intergenic	MIR|SINE|MIR	-11137	NM_006320	10424		NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
226793	chr9	76691851	76692230	+	0	NA	intron (NM_001308049, intron 1 of 11)	intron (NM_001308049, intron 1 of 11)	375	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
135844	chr2	170812701	170813250	+	0	NA	Intergenic	Intergenic	-3715	NM_013445	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
193856	chr6	31550501	31550700	+	0	NA	intron (NM_001144962, intron 2 of 3).3	MIRb|SINE|MIR	2992	NM_005007	4795		NM_005007	ENSG00000204498	NFKBIL1	IKBL|NFKBIL	NFKB inhibitor like 1	protein-coding
215226	chr7	156639901	156641500	+	0	NA	promoter-TSS (NM_001184996)	promoter-TSS (NM_001184996)	-47	NM_001184996	140545		NM_030936	ENSG00000105982	RNF32	FKSG33|HSD15|LMBR2	ring finger protein 32	protein-coding
191667	chr6	13437271	13437630	+	0	NA	intron (NM_018988, intron 1 of 1)	MER3|DNA|hAT-Charlie	-29313	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
116141	chr19	17369871	17370280	+	0	NA	intron (NM_031310, intron 1 of 5)	L1MB7|LINE|L1	7267	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
150821	chr21	44009951	44010050	+	0	NA	Intergenic	AluJr|SINE|Alu	-2309	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
2423	chr1	9595121	9595850	+	0	NA	intron (NM_001130924, intron 1 of 10)	intron (NM_001130924, intron 1 of 10)	6574	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
52660	chr12	56317301	56317600	+	0	NA	3' UTR (NM_001127460, exon 26 of 26)	3' UTR (NM_001127460, exon 26 of 26)	-1102	NM_001190991	10330		NM_014255	ENSG00000257727	CNPY2	HP10390|MSAP|TMEM4|ZSIG9	canopy FGF signaling regulator 2	protein-coding
8714	chr1	42348571	42348830	+	0	NA	Intergenic	Intergenic	-12820	NM_001198850	22887		NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
31555	chr10	97186001	97186200	+	0	NA	promoter-TSS (NM_003061)	promoter-TSS (NM_003061)	-141	NM_003061	6585		NM_003061	ENSG00000187122	SLIT1	MEGF4|SLIL1|SLIT-1|SLIT3	slit guidance ligand 1	protein-coding
161752	chr3	44647901	44648100	+	0	NA	promoter-TSS (NM_003420)	promoter-TSS (NM_003420)	-732	NM_003420	7584		NM_003420	ENSG00000169981	ZNF35	HF.10|HF10|Zfp105	zinc finger protein 35	protein-coding
20668	chr1	200304871	200305030	+	0	NA	Intergenic	Intergenic	68842	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
36387	chr11	3993951	3994300	+	0	NA	intron (NM_001382568, intron 2 of 11)	L1M4b|LINE|L1	-100560	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
46319	chr11	125124071	125124580	+	0	NA	Intergenic	Intergenic	-12699	NM_001258245	219854		NM_001080546	ENSG00000150433	TMEM218	JBTS39	transmembrane protein 218	protein-coding
188277	chr5	151115171	151116030	+	0	NA	intron (NM_001193544, intron 19 of 24)	intron (NM_001193544, intron 19 of 24)	26084	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
70752	chr14	103400571	103400880	+	0	NA	intron (NM_002376, intron 1 of 15)	AluJr|SINE|Alu	15310	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
52695	chr12	56500651	56500750	+	0	NA	Intergenic	HERVK13-int|LTR|ERVK	-12165	NR_132789	106635541		NR_132789		SNORA105C	-	small nucleolar RNA, H/ACA box 105C	snoRNA
135026	chr2	156311801	156312400	+	0	NA	Intergenic	Intergenic	20621	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
2880	chr1	11550671	11550930	+	0	NA	Intergenic	Intergenic	-58731	NR_104624	101929181		NR_104624	ENSG00000235643	LINC01647	-	long intergenic non-protein coding RNA 1647	ncRNA
7296	chr1	32396921	32397380	+	0	NA	Intergenic	AluJb|SINE|Alu	-2709	NM_001143889	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
100053	chr17	58091101	58092130	+	0	NA	3' UTR (NM_080677, exon 3 of 3)	3' UTR (NM_080677, exon 3 of 3)	8196	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
67415	chr14	70187401	70188130	+	0	NA	intron (NR_135825, intron 1 of 3)	CpG	657	NR_135825	646548		NR_135825		LOC646548	-	ADAM metallopeptidase domain 20 pseudogene	pseudo
102355	chr17	75510651	75510950	+	0	NA	promoter-TSS (NM_001142643)	promoter-TSS (NM_001142643)	-910	NM_001142643	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
107910	chr18	57447171	57447330	+	0	NA	intron (NM_004852, intron 1 of 1)	intron (NM_004852, intron 1 of 1)	11876	NM_004852	9480		NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
47998	chr12	6919501	6920000	+	0	NA	exon (NM_001975, exon 8 of 12)	exon (NM_001975, exon 8 of 12)	-4709	NM_001007026	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
121104	chr19	45927521	45928730	+	0	NA	Intergenic	Intergenic	-13347	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
86626	chr16	67427921	67428830	+	0	NA	Intergenic	Intergenic	-2746	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
111151	chr19	3297371	3297730	+	0	NA	TTS (NM_001172673)	TTS (NM_001172673)	-62080	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
140820	chr2	236544901	236545200	+	0	NA	Intergenic	Intergenic	-24775	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
207078	chr7	39960251	39960780	+	0	NA	intron (NM_003718, intron 1 of 13)	AluY|SINE|Alu	10155	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
233265	chr9	137286671	137287280	+	0	NA	Intergenic	AluSx|SINE|Alu	9249	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
119692	chr19	41115971	41116130	+	0	NA	intron (NR_135528, intron 1 of 9)	(TCCC)n|Simple_repeat|Simple_repeat	1618	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
159612	chr3	15262601	15263000	+	0	NA	intron (NM_004844, intron 4 of 8)	AluSx|SINE|Alu	8616	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
68983	chr14	91468501	91469050	+	0	NA	intron (NR_158976, intron 11 of 16)	intron (NR_158976, intron 11 of 16)	41535	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
176971	chr4	104493471	104493880	+	0	NA	intron (NM_025212, intron 1 of 2)	intron (NM_025212, intron 1 of 2)	1219	NR_132741	80319		NM_025212	ENSG00000168772	CXXC4	IDAX	CXXC finger protein 4	protein-coding
696	chr1	1398841	1400580	+	0	NA	promoter-TSS (NM_001350499)	promoter-TSS (NM_001350499)	180	NR_015434	148413		NR_015434	ENSG00000224870	MRPL20-AS1	-	MRPL20 antisense RNA 1	ncRNA
18569	chr1	162854171	162854450	+	0	NA	TTS (NM_178550)	TTS (NM_178550)	14505	NM_178550	339512		NM_178550	ENSG00000185860	CCDC190	C1orf110	coiled-coil domain containing 190	protein-coding
115847	chr19	16526671	16527450	+	0	NA	intron (NM_006387, intron 9 of 16)	intron (NM_006387, intron 9 of 16)	15377	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
136625	chr2	179037701	179037900	+	0	NA	intron (NM_173648, intron 2 of 23)	L1MB4|LINE|L1	12337	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
145362	chr20	41154121	41155100	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-14413	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
148125	chr20	63455901	63456100	+	0	NA	intron (NM_001382235, intron 1 of 16)	intron (NM_001382235, intron 1 of 16)	16655	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
174030	chr4	26823551	26823850	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	36544	NR_134675	105374546		NR_134673		STIM2-AS1	-	STIM2 antisense RNA 1	ncRNA
168204	chr3	141234051	141234150	+	0	NA	intron (NM_001282728, intron 1 of 6)	intron (NM_001282728, intron 1 of 6)	2275	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
194186	chr6	32126701	32126900	+	0	NA	intron (NM_001136153, intron 4 of 17).4	AluJo|SINE|Alu	1446	NM_004381	1388		NM_004381	ENSG00000213676	ATF6B	ATF6beta|CREB-RP|CREBL1|G13	activating transcription factor 6 beta	protein-coding
123985	chr19	55440301	55440780	+	0	NA	intron (NM_001145176, intron 2 of 3)	CpG	2323	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
5436	chr1	25570171	25570680	+	0	NA	Intergenic	Intergenic	26819	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
162060	chr3	46847371	46847530	+	0	NA	Intergenic	Intergenic	-13355	NR_160554	339906		NM_182702	ENSG00000293419	PRSS42P	PRSS42|TESSP2	serine protease 42, pseudogene	pseudo
214256	chr7	148940601	148941500	+	0	NA	promoter-TSS (NR_001571)	promoter-TSS (NR_001571)	-438	NR_001571	6090		NR_001571		RNY5	Y5|hY5	RNA, Ro60-associated Y5	ncRNA
95417	chr17	36085671	36086700	+	0	NA	Intergenic	Intergenic	3513	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
20377	chr1	198101351	198102030	+	0	NA	Intergenic	Intergenic	-55308	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
112449	chr19	6376451	6377050	+	0	NA	promoter-TSS (NM_004158)	promoter-TSS (NM_004158)	-834	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
9599	chr1	52348821	52349100	+	0	NA	Intergenic	Intergenic	17245	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
61780	chr13	75258351	75258530	+	0	NA	Intergenic	Intergenic	17852	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
13671	chr1	116565401	116565600	+	0	NA	intron (NR_026665, intron 1 of 5)	L1MC4|LINE|L1	-5389	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
149053	chr21	15064271	15065400	+	0	NA	5' UTR (NM_003489, exon 1 of 4)	5' UTR (NM_003489, exon 1 of 4)	165	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
4160	chr1	19373201	19373600	+	0	NA	TTS (NM_001313932)	TTS (NM_001313932)	61074	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
132178	chr2	101806021	101806900	+	0	NA	intron (NM_001384572, intron 2 of 29)	AluSx4|SINE|Alu	108195	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
195973	chr6	41962721	41963180	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSc|SINE|Alu	-21102	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
180123	chr5	1312901	1314330	+	0	NA	Intergenic	Intergenic	-4238	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
91350	chr17	4501071	4501680	+	0	NA	intron (NM_001124758, intron 1 of 12)	intron (NM_001124758, intron 1 of 12)	2494	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
18738	chr1	167477951	167478580	+	0	NA	intron (NM_198053, intron 1 of 7)	L3|LINE|CR1	40264	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
109820	chr19	1169971	1170600	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	3983	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
213736	chr7	140389821	140390080	+	0	NA	intron (NM_032295, intron 1 of 11)	AluJr4|SINE|Alu	8580	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
153943	chr22	30340851	30341550	+	0	NA	intron (NM_005877, intron 7 of 15)	intron (NM_005877, intron 7 of 15)	-14259	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
115525	chr19	15445701	15445900	+	0	NA	intron (NM_001371589, intron 2 of 12)	intron (NM_001371589, intron 2 of 12)	-3748	NR_031716	100302127		NR_031716	ENSG00000269782	MIR1470	MIRN1470|hsa-mir-1470	microRNA 1470	ncRNA
13520	chr1	114759401	114759930	+	0	NA	Intergenic	AluSg|SINE|Alu	-1615	NM_001242891	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
507	chr1	1199271	1200230	+	0	NA	Intergenic	Intergenic	6842	NM_148902	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
30454	chr10	79102101	79102580	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	33374	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
55442	chr12	104568001	104568580	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-23343	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
176308	chr4	87395021	87395880	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4262	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
121565	chr19	47264501	47266250	+	0	NA	intron (NM_015603, intron 7 of 11)	intron (NM_015603, intron 7 of 11)	8850	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
84652	chr16	30729301	30729700	+	0	NA	exon (NM_006662, exon 27 of 34)	exon (NM_006662, exon 27 of 34)	-11142	NM_001256829	100862671		NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
82789	chr16	21455121	21455750	+	0	NA	non-coding (NR_027155, exon 22 of 29)	non-coding (NR_027155, exon 22 of 29)	-20980	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
138812	chr2	216210721	216210980	+	0	NA	Intergenic	Intergenic	-6039	NR_037701	150967		NM_001199924	ENSG00000260804	LINC01963	PKI55	long intergenic non-protein coding RNA 1963	ncRNA
191311	chr6	6737201	6737400	+	0	NA	Intergenic	Intergenic	-114474	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
28883	chr10	62765651	62765950	+	0	NA	Intergenic	Intergenic	-38920	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
96033	chr17	39414771	39414930	+	0	NA	intron (NM_004774, intron 16 of 16)	AluSc|SINE|Alu	-12294	NM_001370209	84961		NM_032875	ENSG00000108306	FBXL20	Fbl2|Fbl20	F-box and leucine rich repeat protein 20	protein-coding
110445	chr19	1985221	1985750	+	0	NA	TTS (NM_017797)	TTS (NM_017797)	30229	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
196899	chr6	52309151	52309630	+	0	NA	Intergenic	AluJr|SINE|Alu	-24648	NM_001270472	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
198381	chr6	105495651	105495750	+	0	NA	Intergenic	Intergenic	-92618	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
149359	chr21	29300101	29301080	+	0	NA	intron (NM_206866, intron 1 of 4)	intron (NM_206866, intron 1 of 4)	1215	NM_206866	571		NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding
63018	chr13	112752971	112753430	+	0	NA	non-coding (NR_109811, exon 1 of 1)	non-coding (NR_109811, exon 1 of 1)	1531	NR_109811	100874205		NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
99959	chr17	57454021	57454280	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	69447	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
90331	chr17	1175501	1175700	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	4381	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
131882	chr2	98727801	98728800	+	0	NA	intron (NM_012214, intron 1 of 15)	intron (NM_012214, intron 1 of 15)	2832	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
87322	chr16	70253701	70254380	+	0	NA	intron (NM_001605, intron 17 of 20)	intron (NM_001605, intron 17 of 20)	-2100	NM_058219	118460		NM_058219	ENSG00000223496	EXOSC6	EAP4|MTR3|Mtr3p|hMtr3p|p11	exosome component 6	protein-coding
225411	chr9	35056401	35057980	+	0	NA	exon (NM_007126, exon 17 of 17)	exon (NM_007126, exon 17 of 17)	14950	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
186051	chr5	134067801	134068030	+	0	NA	Intergenic	AluSz|SINE|Alu	-46766	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
75604	chr15	67110621	67111350	+	0	NA	intron (NM_005902, intron 1 of 8)	L1MB7|LINE|L1	-14731	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
30232	chr10	74991501	74991700	+	0	NA	intron (NM_012330, intron 13 of 17).2	intron (NM_012330, intron 13 of 17).2	-30133	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
93744	chr17	19870121	19871000	+	0	NA	Intergenic	AluSx|SINE|Alu	-2624	NM_001142610	9706		NM_014683	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
97546	chr17	44069451	44069550	+	0	NA	Intergenic	AluSp|SINE|Alu	-1173	NM_001384168	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
34815	chr11	286021	286280	+	0	NA	TTS (NM_001276700)	TTS (NM_001276700)	-2976	NM_025092	80162		NM_025092	ENSG00000142102	PGGHG	ATHL1	protein-glucosylgalactosylhydroxylysine glucosidase	protein-coding
172513	chr4	2265801	2266350	+	0	NA	Intergenic	Intergenic	-3966	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
218755	chr8	58922671	58922980	+	0	NA	intron (NM_014729, intron 3 of 8)	intron (NM_014729, intron 3 of 8)	196322	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
144579	chr20	35778621	35779300	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	6945	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
166405	chr3	113591071	113591230	+	0	NA	intron (NR_136284, intron 7 of 21)	MLT1D|LTR|ERVL-MaLR	-3726	NR_039648	100616476		NR_039648	ENSG00000265253	MIR4446	mir-4446	microRNA 4446	ncRNA
33665	chr10	119862671	119862830	+	0	NA	intron (NM_001256379, intron 1 of 15)	L1ME1|LINE|L1	10093	NM_001256378	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
6890	chr1	31432821	31433300	+	0	NA	exon (NM_001199038, exon 10 of 11)	exon (NM_001199038, exon 10 of 11)	19247	NM_018565	347735		NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
104857	chr17	81847851	81848150	+	0	NA	intron (NM_000918, intron 4 of 10)	AluY|SINE|Alu	12535	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
234859	chrX	24838671	24838830	+	0	NA	intron (NR_165483, intron 31 of 35)	intron (NR_165483, intron 31 of 35)	94309	NR_003007	677773		NR_003007	ENSG00000251869	SCARNA23	ACA12	small Cajal body-specific RNA 23	ncRNA
57209	chr12	121502851	121503350	+	0	NA	intron (NM_001005366, intron 11 of 22)	AluSq2|SINE|Alu	-58748	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
212424	chr7	128314501	128315100	+	0	NA	exon (NM_001166135, exon 13 of 15)	exon (NM_001166135, exon 13 of 15)	29108	NM_001166135	55131		NM_018077	ENSG00000106344	RBM28	ANES|NOP4	RNA binding motif protein 28	protein-coding
121472	chr19	47104971	47105330	+	0	NA	intron (NM_015168, intron 2 of 14)	intron (NM_015168, intron 2 of 14)	8626	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
35096	chr11	633371	633530	+	0	NA	Intergenic	AluSg|SINE|Alu	-3819	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
137232	chr2	191638671	191638830	+	0	NA	Intergenic	Intergenic	-39322	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
53227	chr12	62319171	62319330	+	0	NA	intron (NM_001351164, intron 4 of 21)	MSTA|LTR|ERVL-MaLR	58846	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
225597	chr9	36147321	36147580	+	0	NA	intron (NR_104637, intron 3 of 6)	L2|LINE|L2	10665	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
193952	chr6	31680251	31682200	+	0	NA	promoter-TSS (NM_025262).5	promoter-TSS (NM_025262).5	-852	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
27054	chr10	27140251	27140630	+	0	NA	intron (NM_001253866, intron 3 of 17)	intron (NM_001253866, intron 3 of 17)	13944	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
33690	chr10	120684301	120684900	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	86651	NR_103717	404216		NM_001012711	ENSG00000177234	LINC01561	C10orf85	long intergenic non-protein coding RNA 1561	ncRNA
205246	chr7	8063371	8063530	+	0	NA	intron (NM_138426, intron 5 of 7)	L1PA15|LINE|L1	94654	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
192364	chr6	24692671	24693230	+	0	NA	intron (NM_001160094, intron 2 of 3)	intron (NM_001160094, intron 2 of 3)	25873	NM_018473	55856		NM_018473	ENSG00000112304	ACOT13	HT012|PNAS-27|THEM2	acyl-CoA thioesterase 13	protein-coding
106121	chr18	9192671	9193030	+	0	NA	intron (NM_001204056, intron 2 of 11)	AluJr|SINE|Alu	55287	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
28721	chr10	61899901	61900710	+	0	NA	Intergenic	Intergenic	-1394	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
41683	chr11	66624101	66624650	+	0	NA	exon (NM_006328, exon 2 of 3)	exon (NM_006328, exon 2 of 3)	7745	NM_006328	10432		NM_006328	ENSG00000239306	RBM14	COAA|PSP2|SIP|SYTIP1|TMEM137	RNA binding motif protein 14	protein-coding
228863	chr9	112332421	112335200	+	0	NA	promoter-TSS (NM_001244896)	promoter-TSS (NM_001244896)	-146	NM_001163790	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
207934	chr7	50787871	50788030	+	0	NA	intron (NM_001001555, intron 1 of 16)	intron (NM_001001555, intron 1 of 16)	4924	NM_001350816	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
174217	chr4	37688601	37688800	+	0	NA	Intergenic	AluYm1|SINE|Alu	-2324	NM_001085400	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
4811	chr1	23599671	23600580	+	0	NA	Intergenic	AluSz|SINE|Alu	-27209	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
50596	chr12	48655451	48655950	+	0	NA	TTS (NR_002950)	TTS (NR_002950)	1082	NR_002950	677793		NR_002950	ENSG00000206612	SNORA2A	ACA2A	small nucleolar RNA, H/ACA box 2A	snoRNA
100359	chr17	60021921	60022180	+	0	NA	Intergenic	Intergenic	-2998	NR_002924	653645		NR_002924	ENSG00000267104	TBC1D3P1-DHX40P1	DHX40P|DHX40P1|TBC1D3P1	TBC1D3P1-DHX40P1 readthrough, transcribed pseudogene	pseudo
27542	chr10	32328421	32330250	+	0	NA	intron (NR_168508, intron 1 of 12)	MLT1I|LTR|ERVL-MaLR	17823	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
230357	chr9	128051821	128052080	+	0	NA	Intergenic	Intergenic	15370	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
213113	chr7	131237351	131237450	+	0	NA	intron (NM_001145354, intron 2 of 18)	MIR3|SINE|MIR	90379	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
193602	chr6	30726201	30726400	+	0	NA	TTS (NM_001293216).8	TTS (NM_001293216).8	4662	NM_001293215	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
224530	chr9	19187201	19187400	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-43393	NM_001330640	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
10243	chr1	63538001	63538200	+	0	NA	intron (NM_032437, intron 6 of 13)	intron (NM_032437, intron 6 of 13)	-10880	NR_002771	79469		NR_002771		DLEU2L	BCMSUNL	deleted in lymphocytic leukemia 2 like	ncRNA
51284	chr12	51216501	51216700	+	0	NA	intron (NM_001368008, intron 1 of 2)	intron (NM_001368008, intron 1 of 2)	705	NM_001368008	5463		NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
161880	chr3	45928851	45929600	+	0	NA	intron (NM_024513, intron 16 of 17)	intron (NM_024513, intron 16 of 17)	-13501	NM_001276379	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
18820	chr1	167653521	167654400	+	0	NA	intron (NM_001322923, intron 1 of 5)	MIR|SINE|MIR	23728	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
112476	chr19	6412251	6413430	+	0	NA	TTS (NM_001366299)	TTS (NM_001366299)	3671	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
185812	chr5	132441321	132441780	+	0	NA	intron (NR_161242, intron 2 of 3)	AluJr|SINE|Alu	30621	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
120285	chr19	43441621	43441880	+	0	NA	Intergenic	AluSx1|SINE|Alu	23858	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
150570	chr21	43138971	43139330	+	0	NA	Intergenic	Intergenic	1942	NR_133677	106481742		NR_133677		FRGCA	-	FOXM1-regulated, gastric cancer associated	ncRNA
165694	chr3	101942671	101943380	+	0	NA	intron (NR_026934, intron 1 of 3)	FLAM_A|SINE|Alu	2166	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
8449	chr1	40690371	40690900	+	0	NA	non-coding (NR_024567, exon 1 of 1)	non-coding (NR_024567, exon 1 of 1)	-1069	NM_001142588	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
177713	chr4	122150851	122151300	+	0	NA	Intergenic	Intergenic	-1256	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
49547	chr12	26732001	26732400	+	0	NA	intron (NM_002223, intron 2 of 56)	intron (NM_002223, intron 2 of 56)	100994	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
104351	chr17	80986851	80987450	+	0	NA	Intergenic	Intergenic	-4691	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
40658	chr11	64741451	64741830	+	0	NA	intron (NM_001098670, intron 3 of 16)	G-rich|Low_complexity|Low_complexity	2502	NM_001098671	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
60749	chr13	44580971	44581450	+	0	NA	TTS (NR_038381)	TTS (NR_038381)	-4645	NM_001243799	8848		NM_006022	ENSG00000102804	TSC22D1	HUCEP-2|Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
79846	chr16	1451551	1451650	+	0	NA	intron (NM_001114331, intron 15 of 23)	intron (NM_001114331, intron 15 of 23)	-7111	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
3838	chr1	16907871	16908280	+	0	NA	Intergenic	Intergenic	12095	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
84917	chr16	31225051	31225850	+	0	NA	3' UTR (NM_001008274, exon 7 of 7)	3' UTR (NM_001008274, exon 7 of 7)	-8315	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
168810	chr3	152211421	152211880	+	0	NA	Intergenic	Intergenic	-6221	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
167384	chr3	128805901	128806780	+	0	NA	intron (NM_004637, intron 3 of 5)	intron (NM_004637, intron 3 of 5)	-40468	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
230851	chr9	129109451	129109880	+	0	NA	intron (NM_001257363, intron 1 of 14)	intron (NM_001257363, intron 1 of 14)	1128	NM_001346547	1384		NM_000755	ENSG00000095321	CRAT	CAT|CAT1|NBIA8	carnitine O-acetyltransferase	protein-coding
80834	chr16	3488101	3488850	+	0	NA	Intergenic	Intergenic	-3006	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
23583	chr1	229557701	229559430	+	0	NA	exon (NM_012089, exon 1 of 13)	exon (NM_012089, exon 1 of 13)	142	NM_012089	23456		NM_012089	ENSG00000135776	ABCB10	EST20237|M-ABC2|MTABC2	ATP binding cassette subfamily B member 10	protein-coding
11792	chr1	92536321	92537450	+	0	NA	intron (NM_001377213, intron 20 of 20)	intron (NM_001377213, intron 20 of 20)	-49960	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
235938	chrX	53223801	53224390	+	0	NA	intron (NR_148672, intron 1 of 26)	intron (NR_148672, intron 1 of 26)	1112	NR_148673	8242		NM_004187	ENSG00000126012	KDM5C	DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169	lysine demethylase 5C	protein-coding
140571	chr2	233330001	233330530	+	0	NA	intron (NM_000541, intron 9 of 15)	intron (NM_000541, intron 9 of 15)	22449	NM_000541	6295		NM_000541	ENSG00000130561	SAG	RP47|RP96|S-AG	S-antigen visual arrestin	protein-coding
123492	chr19	54195901	54196230	+	0	NA	Intergenic	AluYf1|SINE|Alu	4757	NM_001077446	79042		NM_024075	ENSG00000170892	TSEN34	LENG5|PCH2C|SEN34|SEN34L	tRNA splicing endonuclease subunit 34	protein-coding
117828	chr19	30682971	30683230	+	0	NA	intron (NM_001352260, intron 5 of 5)	intron (NM_001352260, intron 5 of 5)	310716	NM_001352260	9745		NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
26807	chr10	23442401	23442600	+	0	NA	TTS (NM_001145373)	TTS (NM_001145373)	3425	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
7134	chr1	32201101	32202550	+	0	NA	intron (NM_001301011, intron 1 of 4)	intron (NM_001301011, intron 1 of 4)	1230	NM_024296	79140		NM_024296	ENSG00000160050	CCDC28B	-	coiled-coil domain containing 28B	protein-coding
66336	chr14	61435271	61435880	+	0	NA	intron (NM_006255, intron 2 of 13)	FLAM_A|SINE|Alu	114132	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
177614	chr4	121139351	121140030	+	0	NA	intron (NM_024873, intron 9 of 10)	intron (NM_024873, intron 9 of 10)	24631	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
165793	chr3	105803371	105803530	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	64141	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
222319	chr8	133502001	133502600	+	0	NA	intron (NM_173344, intron 2 of 9)	MLT1B|LTR|ERVL-MaLR	69587	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
191817	chr6	14711071	14711330	+	0	NA	Intergenic	LTR50|LTR|ERVL	-425746	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
15238	chr1	149592371	149592530	+	0	NA	Intergenic	Intergenic	8627	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
103135	chr17	77394701	77394900	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	2254	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
83102	chr16	22452701	22453200	+	0	NA	intron (NR_027154, intron 1 of 28)	intron (NR_027154, intron 1 of 28)	-15235	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
160115	chr3	19951371	19952100	+	0	NA	intron (NM_001292048, intron 2 of 5)	AluJr|SINE|Alu	4638	NM_004162	5868		NM_004162	ENSG00000144566	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
44210	chr11	96306471	96308280	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-34063	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
80017	chr16	1927971	1928330	+	0	NA	Intergenic	Intergenic	-9735	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
121	chr1	493951	494930	+	0	NA	non-coding (NR_028322, exon 3 of 3)	non-coding (NR_028322, exon 3 of 3)	1005	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
70625	chr14	102813201	102813400	+	0	NA	intron (NM_001199427, intron 1 of 7)	L1MA5A|LINE|L1	35821	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
179483	chr4	184536571	184538360	+	0	NA	intron (NR_147158, intron 1 of 2)	L1M6|LINE|L1	118	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
198887	chr6	109479871	109480480	+	0	NA	TTS (NM_001164313)	TTS (NM_001164313)	3044	NM_014797	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
159998	chr3	18363471	18363830	+	0	NA	intron (NM_001322873, intron 9 of 10)	intron (NM_001322873, intron 9 of 10)	61689	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
119918	chr19	41706601	41707480	+	0	NA	Intergenic	L2a|LINE|L2	-1586	NM_004363	1048		NM_004363	ENSG00000105388	CEACAM5	CD66e|CEA	CEA cell adhesion molecule 5	protein-coding
167230	chr3	128480801	128481000	+	0	NA	3' UTR (NM_001145662, exon 6 of 6)	3' UTR (NM_001145662, exon 6 of 6)	7021	NM_001145662	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
11981	chr1	94463701	94463950	+	0	NA	intron (NM_001122674, intron 2 of 8)	L2b|LINE|L2	45436	NM_002858	5825		NM_002858	ENSG00000117528	ABCD3	ABC43|CBAS5|PMP70|PXMP1|ZWS2	ATP binding cassette subfamily D member 3	protein-coding
15989	chr1	151972801	151973230	+	0	NA	Intergenic	Intergenic	20844	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
109571	chr19	896451	896950	+	0	NA	3' UTR (NM_138774, exon 8 of 8)	3' UTR (NM_138774, exon 8 of 8)	3216	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
225742	chr9	37039321	37039780	+	0	NA	Intergenic	Intergenic	-5282	NM_001280556	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
219070	chr8	65822221	65823130	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	19389	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
65563	chr14	51942051	51942350	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-23629	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
230965	chr9	129456671	129456830	+	0	NA	Intergenic	(ATGG)n|Simple_repeat|Simple_repeat	-31910	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
39709	chr11	61754101	61754300	+	0	NA	non-coding (NR_026882, exon 4 of 4)	non-coding (NR_026882, exon 4 of 4)	-1178	NM_013279	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
237802	chrX	129929301	129929500	+	0	NA	exon (NM_006649, exon 15 of 15)	exon (NM_006649, exon 15 of 15)	23236	NM_006649	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
133709	chr2	127355351	127355900	+	0	NA	intron (NM_001371911, intron 1 of 16)	Tigger1|DNA|TcMar-Tigger	-12396	NM_006609	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
203707	chr7	1046551	1047380	+	0	NA	intron (NM_001303473, intron 1 of 1)	intron (NM_001303473, intron 1 of 1)	2419	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
77681	chr15	85618551	85619400	+	0	NA	promoter-TSS (NM_001270546)	promoter-TSS (NM_001270546)	-975	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
71122	chr14	104934871	104935330	+	0	NA	3' UTR (NM_001308174, exon 11 of 11)	3' UTR (NM_001308174, exon 11 of 11)	10221	NM_001308174	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
12004	chr1	95116621	95117000	+	0	NA	promoter-TSS (NM_152487)	promoter-TSS (NM_152487)	-545	NM_152487	148534		NM_152487	ENSG00000152078	TLCD4	TMEM56	TLC domain containing 4	protein-coding
175097	chr4	54225771	54226750	+	0	NA	Intergenic	Intergenic	-3033	NM_001347828	5156		NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
142326	chr20	3672421	3673250	+	0	NA	exon (NM_001282447, exon 12 of 22)	exon (NM_001282447, exon 12 of 22)	9175	NM_001282447	80332		NM_025220	ENSG00000149451	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
72526	chr15	34227901	34228880	+	0	NA	intron (NR_147140, intron 3 of 3)	intron (NR_147140, intron 3 of 3)	3374	NM_001351373	51234		NM_016454	ENSG00000128463	EMC4	PIG17|TMEM85	ER membrane protein complex subunit 4	protein-coding
42827	chr11	72833271	72833430	+	0	NA	Intergenic	Intergenic	18939	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
220315	chr8	98825001	98826600	+	0	NA	promoter-TSS (NM_001256313)	promoter-TSS (NM_001256313)	-112	NM_006281	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
177136	chr4	108115601	108116500	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	50747	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
162119	chr3	46931421	46932900	+	0	NA	intron (NM_144716, intron 3 of 7)	L1ME4c|LINE|L1	44341	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
190252	chr5	178728901	178729300	+	0	NA	intron (NM_005649, intron 1 of 4)	intron (NM_005649, intron 1 of 4)	1559	NM_001324339	6940		NM_005649	ENSG00000169131	ZNF354A	EZNF|HEL104|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
20179	chr1	193042921	193043450	+	0	NA	intron (NM_001350842, intron 3 of 11)	intron (NM_001350842, intron 3 of 11)	14230	NR_135615	107397392		NR_135615	ENSG00000238754	SCARNA18B	-	small Cajal body-specific RNA 18B	ncRNA
35326	chr11	1041401	1041600	+	0	NA	Intergenic	Intergenic	-4782	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
198506	chr6	106509301	106509710	+	0	NA	intron (NM_001371242, intron 2 of 21)	intron (NM_001371242, intron 2 of 21)	-2350	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
222013	chr8	130050751	130050930	+	0	NA	Intergenic	Intergenic	-33711	NM_001353269	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
197080	chr6	56594721	56594980	+	0	NA	intron (NM_015548, intron 28 of 83)	MIRb|SINE|MIR	48039	NM_001723	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
205279	chr7	8352151	8352250	+	0	NA	Intergenic	L1HS|LINE|L1	-81409	NM_152745	30010		NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
184448	chr5	99703821	99703900	+	0	NA	Intergenic	LTR16C|LTR|ERVL	169870	NR_110562	102724855		NR_110562		LINC02113	CTD-2151A2.1	long intergenic non-protein coding RNA 2113	ncRNA
135277	chr2	159891151	159891250	+	0	NA	intron (NM_001198760, intron 3 of 37)	intron (NM_001198760, intron 3 of 37)	13556	NM_002349	4065		NM_002349	ENSG00000054219	LY75	CD205|CLEC13B|DEC-205|GP200-MR6|LY-75	lymphocyte antigen 75	protein-coding
115341	chr19	15177171	15177930	+	0	NA	exon (NM_000435, exon 24 of 33)	exon (NM_000435, exon 24 of 33)	1800	NR_106853	102465476		NR_106853	ENSG00000275711	MIR6795	hsa-mir-6795	microRNA 6795	ncRNA
38303	chr11	43678421	43678680	+	0	NA	Intergenic	L1PA5|LINE|L1	-2188	NM_016142	51144		NM_016142	ENSG00000149084	HSD17B12	KAR|SDR12C1	hydroxysteroid 17-beta dehydrogenase 12	protein-coding
131750	chr2	98458021	98458980	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	12490	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
159966	chr3	17704201	17704400	+	0	NA	intron (NM_001349076, intron 1 of 22)	SVA_F|Retroposon|SVA	-4280	NM_001134381	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
210182	chr7	98802101	98802300	+	0	NA	Intergenic	Intergenic	67814	NM_152913	222865		NM_152913	ENSG00000166448	TMEM130	-	transmembrane protein 130	protein-coding
188026	chr5	149646551	149647150	+	0	NA	Intergenic	Intergenic	65352	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
207162	chr7	43594701	43595500	+	0	NA	intron (NM_004760, intron 1 of 6)	intron (NM_004760, intron 1 of 6)	11992	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
2350	chr1	9267021	9267450	+	0	NA	3' UTR (NM_001282587, exon 5 of 5)	3' UTR (NM_001282587, exon 5 of 5)	-25659	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
102967	chr17	76712201	76712600	+	0	NA	TTS (NM_001081461)	TTS (NM_001081461)	-1435	NM_001008529	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
24694	chr1	247300271	247300630	+	0	NA	3' UTR (NM_032752, exon 10 of 10)	3' UTR (NM_032752, exon 10 of 10)	31417	NM_032752	84838		NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
232969	chr9	136967351	136967450	+	0	NA	Intergenic	AluYc|SINE|Alu	-2012	NR_157392	101928638		NM_001101674		LINC02692	C9orf141|PRR31	long intergenic non-protein coding RNA 2692	ncRNA
144546	chr20	35726751	35727050	+	0	NA	intron (NM_184234, intron 6 of 16)	AluSx|SINE|Alu	15360	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
85687	chr16	56426621	56426950	+	0	NA	Intergenic	L1MB8|LINE|L1	-1240	NM_001144	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
28130	chr10	43427001	43427950	+	0	NA	Intergenic	Intergenic	-9373	NM_001355446	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
14619	chr1	145431651	145432230	+	0	NA	Intergenic	CpG	-26162	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
13869	chr1	117778501	117778700	+	0	NA	Intergenic	Intergenic	151021	NM_001135589	54834		NM_017686	ENSG00000196505	GDAP2	MACROD3|SCAR27	ganglioside induced differentiation associated protein 2	protein-coding
70272	chr14	101727971	101728630	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-2137	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
197201	chr6	63593951	63594280	+	0	NA	Intergenic	L1MC5|LINE|L1	21635	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
193420	chr6	30456051	30456580	+	0	NA	Intergenic	Intergenic	-33194	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
66907	chr14	65287231	65288750	+	0	NA	Intergenic	Intergenic	47193	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
150243	chr21	41375151	41375450	+	0	NA	intron (NM_002463, intron 1 of 13)	L2b|LINE|L2	13273	NM_002463	4600		NM_002463	ENSG00000183486	MX2	MXB	MX dynamin like GTPase 2	protein-coding
67632	chr14	73029271	73029630	+	0	NA	Intergenic	AluSz|SINE|Alu	-2344	NM_021260	53349		NM_021260	ENSG00000165861	ZFYVE1	DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1	zinc finger FYVE-type containing 1	protein-coding
25221	chr10	5810501	5810780	+	0	NA	intron (NM_001115156, intron 1 of 9)	Tigger15a|DNA|TcMar-Tigger	2794	NM_001494	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
86448	chr16	66926571	66926730	+	0	NA	Intergenic	Intergenic	-1114	NM_001128850	6236		NM_004165	ENSG00000166592	RRAD	RAD|RAD1|REM3	RRAD, Ras related glycolysis inhibitor and calcium channel regulator	protein-coding
21229	chr1	204189101	204189600	+	0	NA	TTS (NM_002256)	TTS (NM_002256)	7141	NM_002256	3814		NM_002256	ENSG00000170498	KISS1	HH13|KiSS-1	KiSS-1 metastasis suppressor	protein-coding
122289	chr19	49088021	49088330	+	0	NA	intron (NM_003089, intron 2 of 9)	AluSx|SINE|Alu	2724	NM_001301069	6625		NM_003089	ENSG00000104852	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein U1 subunit 70	protein-coding
150327	chr21	42060171	42061050	+	0	NA	Intergenic	AluJb|SINE|Alu	-2267	NM_001199527	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
59649	chr13	28324201	28324480	+	0	NA	intron (NM_002019, intron 20 of 29)	intron (NM_002019, intron 20 of 29)	170788	NM_002019	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
84725	chr16	30921071	30922000	+	0	NA	non-coding (NR_024348, exon 1 of 1)	non-coding (NR_024348, exon 1 of 1)	-1316	NM_001382780	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
47064	chr12	560001	560200	+	0	NA	intron (NM_173593, intron 19 of 19)	intron (NM_173593, intron 19 of 19)	26386	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
124514	chr2	35901	36100	+	0	NA	Intergenic	Intergenic	10505	NM_001077710	642273		NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
208900	chr7	73855571	73856280	+	0	NA	Intergenic	Intergenic	-5234	NM_182504	135886		NM_182504	ENSG00000175877	TMEM270	WBSCR28	transmembrane protein 270	protein-coding
167017	chr3	126258801	126259000	+	0	NA	Intergenic	Intergenic	-77714	NM_001270364	10840		NM_012190	ENSG00000144908	ALDH1L1	10-FTHFDH|10-fTHF|FDH|FTHFD	aldehyde dehydrogenase 1 family member L1	protein-coding
43973	chr11	93787201	93787430	+	0	NA	intron (NM_004268, intron 1 of 11)	AluY|SINE|Alu	3033	NM_004268	9440		NM_004268	ENSG00000042429	MED17	CRSP6|CRSP77|DRIP80|SRB4|TRAP80	mediator complex subunit 17	protein-coding
132062	chr2	101249971	101250330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2736	NM_017546	55571		NM_017546	ENSG00000158435	CNOT11	C2orf29|C40	CCR4-NOT transcription complex subunit 11	protein-coding
133631	chr2	126775021	126775630	+	0	NA	Intergenic	L2b|LINE|L2	119167	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
46117	chr11	122978351	122978900	+	0	NA	intron (NM_001098169, intron 2 of 2)	intron (NM_001098169, intron 2 of 2)	3209	NM_001098169	390259		NM_001098169	ENSG00000188909	BSX	BSX1	brain specific homeobox	protein-coding
36189	chr11	3324721	3325050	+	0	NA	Intergenic	MER57E1|LTR|ERV1	54261	NM_007152	7748		NM_007152	ENSG00000005801	ZNF195	HRF1|ZNFP104	zinc finger protein 195	protein-coding
213360	chr7	135672751	135673430	+	0	NA	intron (NM_001130929, intron 2 of 2)	intron (NM_001130929, intron 2 of 2)	10576	NM_001130929	647087		NM_001130929	ENSG00000243317	STMP1	C7orf73|Mm47|Mtlbn|PL-5283	short transmembrane mitochondrial protein 1	protein-coding
154829	chr22	37062251	37062830	+	0	NA	exon (NM_024681, exon 8 of 8)	exon (NM_024681, exon 8 of 8)	10804	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
45344	chr11	118231601	118231800	+	0	NA	intron (NM_001286152, intron 5 of 5)	L2a|LINE|L2	-6689	NM_001286570	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
108156	chr18	62638421	62638700	+	0	NA	Intergenic	Intergenic	-76981	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
104678	chr17	81501501	81502100	+	0	NA	Intergenic	AluSx|SINE|Alu	10999	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
235074	chrX	40171521	40172280	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	5377	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
208650	chr7	73026651	73027030	+	0	NA	exon (NM_001382525, exon 3 of 8)	exon (NM_001382525, exon 3 of 8)	1579	NM_001382563	105180390		NM_001382563	ENSG00000286038	SPDYE13	SPDYE13P	speedy/RINGO cell cycle regulator family member E13	protein-coding
87092	chr16	68518871	68519030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-20263	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
227184	chr9	87869701	87869900	+	0	NA	intron (NR_149022, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	-10744	NR_040117	392364		NR_040117		NPAP1P9	-	nuclear pore associated protein 1 pseudogene 9	pseudo
180770	chr5	32163771	32164680	+	0	NA	intron (NM_022130, intron 1 of 3)	intron (NM_022130, intron 1 of 3)	10094	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
22933	chr1	225962351	225962750	+	0	NA	Intergenic	Intergenic	-21058	NM_001172425	7044		NM_003240	ENSG00000143768	LEFTY2	EBAF|LEFTA|LEFTYA|TGFB4	left-right determination factor 2	protein-coding
110769	chr19	2394201	2394950	+	0	NA	intron (NM_182973, intron 2 of 17)	intron (NM_182973, intron 2 of 17)	-1602	NR_169739	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
140419	chr2	233107701	233108250	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	47633	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
68944	chr14	91394071	91394650	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	23460	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
237787	chrX	129787451	129787980	+	0	NA	intron (NM_018990, intron 1 of 7)	intron (NM_018990, intron 1 of 7)	7766	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
107789	chr18	51135771	51136000	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	61796	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
213905	chr7	142492171	142492730	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	17923	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
115437	chr19	15317601	15317800	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	14839	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
203882	chr7	1479451	1480130	+	0	NA	intron (NM_001080453, intron 30 of 47)	CpG-25344	-20320	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
72722	chr15	38684651	38684980	+	0	NA	Intergenic	Intergenic	-11783	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
198702	chr6	108121271	108121630	+	0	NA	Intergenic	MIR3|SINE|MIR	-2183	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
870	chr1	1625821	1626550	+	0	NA	intron (NM_080875, intron 8 of 19)	intron (NM_080875, intron 8 of 19)	-5988	NM_006983	8510		NM_006983	ENSG00000189409	MMP23B	MIFR|MIFR-1|MMP22|MMP23A	matrix metallopeptidase 23B	protein-coding
175373	chr4	70652071	70652430	+	0	NA	Intergenic	MIR|SINE|MIR	14258	NM_144646	3512		NM_144646	ENSG00000132465	JCHAIN	IGCJ|IGJ|JCH	joining chain of multimeric IgA and IgM	protein-coding
185609	chr5	131421071	131421530	+	0	NA	Intergenic	AluJb|SINE|Alu	157247	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
236463	chrX	71578471	71579780	+	0	NA	intron (NM_052957, intron 1 of 12)	intron (NM_052957, intron 1 of 12)	1101	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
21905	chr1	207820571	207821630	+	0	NA	non-coding (NR_026817, exon 1 of 1)	non-coding (NR_026817, exon 1 of 1)	1603	NR_135299	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
6945	chr1	31749171	31749530	+	0	NA	intron (NM_001294336, intron 4 of 31)	intron (NM_001294336, intron 4 of 31)	9385	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
38061	chr11	35179601	35179830	+	0	NA	intron (NM_001001392, intron 2 of 3)	intron (NM_001001392, intron 2 of 3)	16765	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
64067	chr14	22559551	22560000	+	0	NA	Intergenic	Intergenic	-2713	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
213655	chr7	139776691	139777150	+	0	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	1078	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
196371	chr6	43245551	43246180	+	0	NA	intron (NM_032538, intron 1 of 14)	intron (NM_032538, intron 1 of 14)	2384	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
74263	chr15	57080171	57080330	+	0	NA	intron (NM_001322156, intron 5 of 21)	intron (NM_001322156, intron 5 of 21)	-139180	NM_001306220	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
112839	chr19	7532771	7533280	+	0	NA	intron (NM_020533, intron 12 of 13)	intron (NM_020533, intron 12 of 13)	-1139	NM_006702	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
208365	chr7	66628051	66629750	+	0	NA	promoter-TSS (NM_001167961)	promoter-TSS (NM_001167961)	19	NM_153033	154881		NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
158944	chr3	10152601	10152800	+	0	NA	3' UTR (NM_000551, exon 3 of 3)	3' UTR (NM_000551, exon 3 of 3)	10922	NM_198156	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
205122	chr7	6938251	6938580	+	0	NA	Intergenic	Intergenic	-112140	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
34540	chr10	132942251	132943000	+	0	NA	promoter-TSS (NM_001200049)	promoter-TSS (NM_001200049)	-55	NM_001200049	54777		NM_017609	ENSG00000171811	CFAP46	C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	cilia and flagella associated protein 46	protein-coding
77389	chr15	83012771	83013030	+	0	NA	Intergenic	L2c|LINE|L2	-1261	NM_001160114	123207		NM_144597	ENSG00000169609	C15orf40	-	chromosome 15 open reading frame 40	protein-coding
185959	chr5	133053771	133054130	+	0	NA	intron (NM_002154, intron 1 of 18)	AluSz|SINE|Alu	1937	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
144742	chr20	36591871	36592750	+	0	NA	3' UTR (NM_021809, exon 3 of 3)	3' UTR (NM_021809, exon 3 of 3)	-13469	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
58036	chr12	124452151	124452250	+	0	NA	intron (NM_001077261, intron 8 of 47)	intron (NM_001077261, intron 8 of 47)	-114958	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
218114	chr8	41507271	41508100	+	0	NA	intron (NR_156425, intron 5 of 5)	intron (NR_156425, intron 5 of 5)	17073	NR_156425	51125		NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
109419	chr19	695021	695880	+	0	NA	promoter-TSS (NM_001308209)	promoter-TSS (NM_001308209)	2	NM_001308209	400668		NM_214710	ENSG00000185198	PRSS57	NSP4|PRSSL1|UNQ782	serine protease 57	protein-coding
239417	chrY	56677151	56677450	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-276955	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
94345	chr17	28887771	28888130	+	0	NA	intron (NM_001330170, intron 2 of 10)	intron (NM_001330170, intron 2 of 10)	9783	NM_004475	2319		NM_004475	ENSG00000132589	FLOT2	ECS-1|ECS1|ESA|ESA1|M17S1	flotillin 2	protein-coding
43062	chr11	74449251	74449670	+	0	NA	Intergenic	Intergenic	18089	NM_005472	10008		NM_005472	ENSG00000175538	KCNE3	BRGDA6|HOKPP|HYPP|MiRP2	potassium voltage-gated channel subfamily E regulatory subunit 3	protein-coding
164078	chr3	55482401	55482600	+	0	NA	intron (NM_003392, intron 1 of 4)	intron (NM_003392, intron 1 of 4)	-1102	NM_001256105	7474		NM_003392	ENSG00000114251	WNT5A	hWNT5A	Wnt family member 5A	protein-coding
98409	chr17	46592671	46593050	+	0	NA	intron (NR_040116, intron 1 of 19).2	intron (NR_040116, intron 1 of 19).2	2126	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
55940	chr12	109947371	109948000	+	0	NA	3' UTR (NM_001330154, exon 14 of 14)	3' UTR (NM_001330154, exon 14 of 14)	47108	NM_032300	84260		NM_032300	ENSG00000139437	TCHP	TpMs	trichoplein keratin filament binding	protein-coding
63634	chr14	20690871	20691360	+	0	NA	intron (NM_194431, intron 1 of 1)	intron (NM_194431, intron 1 of 1)	2351	NM_001385274	283		NM_001145	ENSG00000214274	ANG	ALS9|HEL168|RAA1|RNASE4|RNASE5	angiogenin	protein-coding
191254	chr6	5996151	5996250	+	0	NA	Intergenic	CpG	7844	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
145530	chr20	44129951	44130250	+	0	NA	intron (NM_020433, intron 2 of 5)	intron (NM_020433, intron 2 of 5)	57088	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
35113	chr11	664571	664930	+	0	NA	intron (NM_001293634, intron 8 of 10)	intron (NM_001293634, intron 8 of 10)	27481	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
49938	chr12	39765021	39765300	+	0	NA	intron (NM_052885, intron 7 of 9)	intron (NM_052885, intron 7 of 9)	138977	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
223864	chr9	116501	118050	+	0	NA	exon (NM_207305, exon 1 of 1)	exon (NM_207305, exon 1 of 1)	1142	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
130011	chr2	74174851	74175350	+	0	NA	intron (NM_001317112, intron 1 of 4)	MER1A|DNA|hAT-Charlie	3214	NM_001317111	55233		NM_018221	ENSG00000114978	MOB1A	C2orf6|MABKL1B|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B	MOB kinase activator 1A	protein-coding
83094	chr16	22447471	22447630	+	0	NA	intron (NR_027154, intron 1 of 28)	AluYm1|SINE|Alu	-9835	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
15055	chr1	148406171	148406530	+	0	NA	intron (NR_168363, intron 1 of 6)	HAL1|LINE|L1	3635	NR_104081	101954272		NR_104081	ENSG00000201183	RNVU1-3	RNU1-113|RNU1-151|RNVU1-12|vU1.12|vU1.3	RNA, variant U1 small nuclear 3	snRNA
155531	chr22	38702451	38702550	+	0	NA	Intergenic	AluJb|SINE|Alu	-1097	NM_001360235	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
126412	chr2	27681471	27682150	+	0	NA	intron (NM_018158, intron 8 of 13)	intron (NM_018158, intron 8 of 13)	-17970	NM_001282730	9913		NM_014860	ENSG00000119760	SUPT7L	SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H	SPT7 like, STAGA complex subunit gamma	protein-coding
211184	chr7	102595851	102597130	+	0	NA	intron (NM_001079877, intron 8 of 19)	intron (NM_001079877, intron 8 of 19)	20266	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
60967	chr13	46598651	46598950	+	0	NA	intron (NM_015116, intron 1 of 18)	intron (NM_015116, intron 1 of 18)	45630	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
79427	chr16	700421	701730	+	0	NA	intron (NM_153350, intron 1 of 5)	CpG	4726	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
49289	chr12	20220231	20220500	+	0	NA	Intergenic	L1MA4|LINE|L1	-92464	NR_146523	105369684		NR_146523		LINC02468	-	long intergenic non-protein coding RNA 2468	ncRNA
234666	chrX	20146851	20147350	+	0	NA	Intergenic	LTR8|LTR|ERV1	-5262	NM_001412	1964		NM_001412	ENSG00000173674	EIF1AX	EIF1A|EIF1AP1|EIF4C|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A X-linked	protein-coding
39217	chr11	57567701	57568830	+	0	NA	promoter-TSS (NM_198183)	promoter-TSS (NM_198183)	65	NM_198183	9246		NM_004223	ENSG00000156587	UBE2L6	RIG-B|UBCH8	ubiquitin conjugating enzyme E2 L6	protein-coding
107617	chr18	48930421	48930980	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	12107	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
56882	chr12	120299471	120299950	+	0	NA	intron (NM_001385735, intron 1 of 3)	LTR64|LTR|ERV1	-2611	NM_001385734	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
237619	chrX	124010121	124010480	+	0	NA	intron (NM_001282418, intron 2 of 33)	L1MB2|LINE|L1	48594	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
7564	chr1	35156801	35157400	+	0	NA	Intergenic	Intergenic	36045	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
9370	chr1	47231551	47232830	+	0	NA	promoter-TSS (NM_001290405)	promoter-TSS (NM_001290405)	35	NM_001290406	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
80140	chr16	2084901	2085330	+	0	NA	intron (NM_001370404, intron 34 of 40)	intron (NM_001370404, intron 34 of 40)	5169	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
155816	chr22	39322271	39322630	+	0	NA	Intergenic	MIRc|SINE|MIR	-2827	NM_001033853	6122		NM_000967	ENSG00000100316	RPL3	ASC-1|L3|TARBP-B|uL3	ribosomal protein L3	protein-coding
134160	chr2	134243051	134243350	+	0	NA	intron (NM_001371457, intron 1 of 16)	MER5B|DNA|hAT-Charlie	-10872	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
115896	chr19	16585701	16586200	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-13535	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
32424	chr10	102480351	102480900	+	0	NA	3' UTR (NM_005736, exon 11 of 11)	3' UTR (NM_005736, exon 11 of 11)	19230	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
101265	chr17	66329351	66330130	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	27127	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
14311	chr1	143832371	143832630	+	0	NA	Intergenic	MER89|LTR|ERV1	38900	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
164934	chr3	71214901	71215300	+	0	NA	intron (NM_001012505, intron 5 of 6)	MER5A1|DNA|hAT-Charlie	29977	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
185731	chr5	132073371	132074180	+	0	NA	promoter-TSS (NM_000758)	promoter-TSS (NM_000758)	-14	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
132236	chr2	102364321	102364580	+	0	NA	intron (NM_001371424, intron 2 of 8)	L1ME3|LINE|L1	8167	NM_001282399	8809		NM_003855	ENSG00000115604	IL18R1	CD218a|CDw218a|IL-18R-alpha|IL-18Ralpha|IL-1Rrp|IL18RA|IL18Ralpha2|IL1RRP	interleukin 18 receptor 1	protein-coding
172964	chr4	3852521	3852650	+	0	NA	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	86200	NM_000683	152		NM_000683	ENSG00000184160	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
18075	chr1	160657251	160657750	+	0	NA	Intergenic	Intergenic	-10189	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
20867	chr1	202126371	202127180	+	0	NA	intron (NM_004767, intron 1 of 1)	intron (NM_004767, intron 1 of 1)	3858	NM_004767	9283		NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2|ETBRLP2	G protein-coupled receptor 37 like 1	protein-coding
186287	chr5	134551871	134552280	+	0	NA	exon (NM_015288, exon 4 of 11)	exon (NM_015288, exon 4 of 11)	25967	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
59341	chr13	24581501	24581700	+	0	NA	non-coding (NR_002815, exon 1 of 9)	non-coding (NR_002815, exon 1 of 9)	1392	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
93128	chr17	17723321	17724050	+	0	NA	intron (NM_030665, intron 1 of 5)	CpG	42227	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
218636	chr8	56241851	56242180	+	0	NA	Intergenic	Intergenic	30226	NM_001011671	79145		NM_024300	ENSG00000170791	CHCHD7	COX23	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding
72214	chr15	30178271	30178430	+	0	NA	Intergenic	Intergenic	-17686	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
118130	chr19	34888351	34888450	+	0	NA	Intergenic	Intergenic	10543	NR_046222	100652909		NR_046222	ENSG00000271171	LINC00904	-	long intergenic non-protein coding RNA 904	ncRNA
230300	chr9	127948201	127948750	+	0	NA	intron (NM_203305, intron 1 of 7)	intron (NM_203305, intron 1 of 7)	2239	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
104800	chr17	81738451	81738750	+	0	NA	Intergenic	Intergenic	26316	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
41644	chr11	66491301	66491980	+	0	NA	intron (NM_001256670, intron 7 of 16)	intron (NM_001256670, intron 7 of 16)	11206	NM_130443	10072		NM_005700	ENSG00000254986	DPP3	DPPIII	dipeptidyl peptidase 3	protein-coding
11596	chr1	91576071	91576630	+	0	NA	Intergenic	Intergenic	75242	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
115868	chr19	16560171	16560330	+	0	NA	intron (NM_024881, intron 4 of 5)	L1MD2|LINE|L1	12165	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
173352	chr4	7827921	7829250	+	0	NA	intron (NM_001371091, intron 7 of 17)	intron (NM_001371091, intron 7 of 17)	43723	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
105094	chr17	82123301	82123500	+	0	NA	intron (NM_001367828, intron 16 of 16)	AluJo|SINE|Alu	-25164	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
5487	chr1	25678971	25679130	+	0	NA	intron (NM_020379, intron 1 of 11)	(AG)n|Simple_repeat|Simple_repeat	-17105	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
12192	chr1	100377521	100378350	+	0	NA	intron (NM_001319210, intron 3 of 16)	intron (NM_001319210, intron 3 of 16)	25429	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
199145	chr6	111723421	111723880	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	35481	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
234698	chrX	20421171	20421530	+	0	NA	Intergenic	Intergenic	-154441	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
93821	chr17	20784151	20784350	+	0	NA	Intergenic	Intergenic	71804	NR_073509	100287072		NR_073509		LOC100287072	-	ribosomal protein S6 kinase B1 pseudogene	pseudo
121828	chr19	47963021	47963480	+	0	NA	Intergenic	AluSc|SINE|Alu	7568	NR_024220	100170225		NR_024220		SNAR-C1	-	small NF90 (ILF3) associated RNA C1	snRNA
220426	chr8	100290721	100291330	+	0	NA	intron (NM_001280539, intron 2 of 10)	LTR33|LTR|ERVL	11168	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
158022	chr22	49915651	49915950	+	0	NA	intron (NM_024105, intron 1 of 9)	intron (NM_024105, intron 1 of 9)	2638	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
46040	chr11	122687251	122687550	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	31678	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
142415	chr20	3893271	3893430	+	0	NA	intron (NM_001324191, intron 2 of 7)	intron (NM_001324191, intron 2 of 7)	3534	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
189962	chr5	177433101	177433350	+	0	NA	exon (NM_002082, exon 6 of 16)	exon (NM_002082, exon 6 of 16)	6539	NM_002082	2870		NM_002082	ENSG00000198055	GRK6	GPRK6	G protein-coupled receptor kinase 6	protein-coding
112765	chr19	7426171	7426330	+	0	NA	intron (NM_015318, intron 1 of 20)	AluSx|SINE|Alu	-13438	NM_001130955	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
175079	chr4	54096801	54097630	+	0	NA	Intergenic	Intergenic	-2948	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
196658	chr6	44312521	44313900	+	0	NA	exon (NM_020745, exon 1 of 22)	exon (NM_020745, exon 1 of 22)	137	NM_020745	57505		NM_020745	ENSG00000124608	AARS2	AARSL|COXPD8|LKENP|MT-ALARS|MTALARS	alanyl-tRNA synthetase 2, mitochondrial	protein-coding
87104	chr16	68590421	68590780	+	0	NA	Intergenic	Intergenic	51309	NM_001305208	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
117	chr1	491371	492110	+	0	NA	non-coding (NR_028322, exon 3 of 3)	non-coding (NR_028322, exon 3 of 3)	3705	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
205297	chr7	11006371	11006700	+	0	NA	intron (NM_014660, intron 4 of 16)	intron (NM_014660, intron 4 of 16)	32663	NR_033436	9678		NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
31626	chr10	97383251	97383650	+	0	NA	intron (NM_015179, intron 10 of 33)	MIRb|SINE|MIR	17890	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
135299	chr2	160269401	160270480	+	0	NA	intron (NR_103775, intron 1 of 1)	CpG	1955	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
16913	chr1	155886401	155886600	+	0	NA	Intergenic	Intergenic	24418	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
178981	chr4	163165701	163166400	+	0	NA	intron (NM_138386, intron 1 of 7)	intron (NM_138386, intron 1 of 7)	840	NM_001128931	92345		NM_138386	ENSG00000145414	NAF1	PFBMFT7	nuclear assembly factor 1 ribonucleoprotein	protein-coding
13177	chr1	112399271	112399930	+	0	NA	intron (NM_018704, intron 1 of 5)	intron (NM_018704, intron 1 of 5)	3386	NM_018704	55917		NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
19680	chr1	181013171	181013750	+	0	NA	intron (NM_005819, intron 1 of 7)	AluJr4|SINE|Alu	9410	NM_005819	10228		NM_005819	ENSG00000135823	STX6	-	syntaxin 6	protein-coding
62833	chr13	109776101	109776300	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	10383	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
63353	chr13	114033251	114034450	+	0	NA	intron (NM_001320822, intron 4 of 23).2	intron (NM_001320822, intron 4 of 23).2	44105	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
196908	chr6	52361521	52363630	+	0	NA	intron (NM_133367, intron 1 of 1)	CpG	424	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
86555	chr16	67194471	67194830	+	0	NA	intron (NM_001950, intron 5 of 9)	intron (NM_001950, intron 5 of 9)	2495	NM_001950	1874		NM_001950	ENSG00000205250	E2F4	E2F-4	E2F transcription factor 4	protein-coding
163203	chr3	50233471	50233630	+	0	NA	intron (NM_001282617, intron 1 of 8)	intron (NM_001282617, intron 1 of 8)	-2654	NM_002070	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
28844	chr10	62528251	62529000	+	0	NA	Intergenic	Intergenic	-153498	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
110835	chr19	2501751	2502050	+	0	NA	Intergenic	Intergenic	25773	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
225546	chr9	35831121	35831580	+	0	NA	intron (NM_001363625, intron 1 of 4)	intron (NM_001363625, intron 1 of 4)	2122	NM_001042590	51754		NM_016446	ENSG00000137103	TMEM8B	C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6|NGX6a	transmembrane protein 8B	protein-coding
122853	chr19	50478801	50479500	+	0	NA	intron (NM_206538, intron 3 of 6)	intron (NM_206538, intron 3 of 6)	-2302	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
142688	chr20	7980421	7980780	+	0	NA	3' UTR (NM_021156, exon 8 of 8)	3' UTR (NM_021156, exon 8 of 8)	39161	NM_021156	56255		NM_021156	ENSG00000125827	TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin related transmembrane protein 4	protein-coding
171911	chr4	833201	833430	+	0	NA	Intergenic	Intergenic	-7186	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
93783	chr17	20273271	20273650	+	0	NA	intron (NM_001033555, intron 10 of 12)	AluSz6|SINE|Alu	-47714	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
42446	chr11	69303521	69303780	+	0	NA	Intergenic	Intergenic	9495	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
61805	chr13	75539871	75540430	+	0	NA	intron (NM_001287394, intron 1 of 2)	AluSx|SINE|Alu	-2278	NM_001287392	170622		NM_203495	ENSG00000188243	COMMD6	Acrg	COMM domain containing 6	protein-coding
81387	chr16	5091951	5093000	+	0	NA	intron (NM_201400, intron 3 of 7)	intron (NM_201400, intron 3 of 7)	5320	NM_201400	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
61491	chr13	52570001	52570210	+	0	NA	intron (NR_002793, intron 17 of 23)	L1PA16|LINE|L1	-47420	NM_001011724	144983		NM_001011724	ENSG00000139675	HNRNPA1L2	-	heterogeneous nuclear ribonucleoprotein A1 like 2	protein-coding
65499	chr14	51884201	51884900	+	0	NA	intron (NM_053064, intron 2 of 3)	MIRb|SINE|MIR	23938	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
57925	chr12	123580121	123580580	+	0	NA	TTS (NR_110049)	TTS (NR_110049)	3977	NR_110049	101927415		NR_110049		TMED2-DT	-	TMED2 divergent transcript	ncRNA
81189	chr16	4480501	4480700	+	0	NA	intron (NM_001286268, intron 1 of 5).2	AluSz|SINE|Alu	4202	NM_002134	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
105406	chr17	82776371	82776930	+	0	NA	intron (NM_005993, intron 6 of 38)	intron (NM_005993, intron 6 of 38)	24585	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
85181	chr16	46833401	46833600	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2320	NR_145834	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
93056	chr17	17460071	17460230	+	0	NA	Intergenic	(CCATCA)n|Simple_repeat|Simple_repeat	-16850	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
204230	chr7	2537671	2538730	+	0	NA	non-coding (NR_146879, exon 15 of 15)	non-coding (NR_146879, exon 15 of 15)	11126	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
138731	chr2	213238801	213239600	+	0	NA	Intergenic	Intergenic	45009	NR_161186	100130451		NR_144752		SPAG16-DT	-	SPAG16 divergent transcript	ncRNA
42628	chr11	72236821	72237300	+	0	NA	intron (NM_001567, intron 25 of 27)	MIRc|SINE|MIR	7116	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
203750	chr7	1161821	1162500	+	0	NA	intron (NR_110065, intron 2 of 3)	AluJb|SINE|Alu	1375	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
100585	chr17	63427171	63427530	+	0	NA	3' UTR (NM_025185, exon 26 of 26)	3' UTR (NM_025185, exon 26 of 26)	12917	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
120474	chr19	44741051	44741150	+	0	NA	Intergenic	AluSz|SINE|Alu	-7608	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
78488	chr15	92917521	92918250	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	13486	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
168429	chr3	142507621	142507930	+	0	NA	intron (NM_001184, intron 28 of 46)	intron (NM_001184, intron 28 of 46)	-59713	NM_001282859	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
224362	chr9	7570121	7570400	+	0	NA	Intergenic	Intergenic	229518	NM_033428	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
117565	chr19	21312701	21312900	+	0	NA	intron (NM_021269, intron 1 of 3)	intron (NM_021269, intron 1 of 3)	16610	NM_021269	7562		NM_021269	ENSG00000182141	ZNF708	KOX8|ZNF15|ZNF15L1	zinc finger protein 708	protein-coding
50981	chr12	49560801	49561330	+	0	NA	intron (NM_006337, intron 8 of 14)	intron (NM_006337, intron 8 of 14)	5374	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
85888	chr16	57057051	57057150	+	0	NA	intron (NM_001384959, intron 27 of 46)	intron (NM_001384959, intron 27 of 46)	-35483	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
97742	chr17	44389051	44389350	+	0	NA	intron (NM_000419, intron 1 of 29)	intron (NM_000419, intron 1 of 29)	449	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
13379	chr1	113927901	113928150	+	0	NA	intron (NR_110725, intron 2 of 4)	intron (NR_110725, intron 2 of 4)	1233	NR_110725	101928846		NR_110725	ENSG00000235527	HIPK1-AS1	-	HIPK1 antisense RNA 1	ncRNA
232806	chr9	136714051	136714350	+	0	NA	intron (NM_152421, intron 1 of 4)	AluJr|SINE|Alu	1628	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
4530	chr1	21909801	21910200	+	0	NA	intron (NM_001291860, intron 1 of 96)	intron (NM_001291860, intron 1 of 96)	27310	NM_005529	3339		NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
83324	chr16	24735871	24736230	+	0	NA	intron (NM_001330520, intron 2 of 23)	AluSq2|SINE|Alu	6399	NM_014494	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
95650	chr17	38058121	38058380	+	0	NA	exon (NM_001369500, exon 13 of 13).3	exon (NM_001369500, exon 13 of 13).3	10344	NM_001291465	101060389		NM_001123390	ENSG00000274419	TBC1D3D	PRC17|TBC1D3|TBC1D3A|TBC1D3H	TBC1 domain family member 3D	protein-coding
159809	chr3	16342951	16343250	+	0	NA	intron (NM_015150, intron 7 of 9)	AluJb|SINE|Alu	77888	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
98521	chr17	47562051	47562400	+	0	NA	intron (NM_006310, intron 2 of 22)	MER21A|LTR|ERVL	31117	NM_006310	9520		NM_006310	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
229455	chr9	121651271	121651830	+	0	NA	intron (NM_032552, intron 1 of 16)	CpG	84448	NM_032552	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
202198	chr6	156456171	156456330	+	0	NA	Intergenic	Intergenic	77500	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
31448	chr10	95867701	95868100	+	0	NA	3' UTR (NM_001164183, exon 8 of 8)	3' UTR (NM_001164183, exon 8 of 8)	-40075	NM_001349008	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
23052	chr1	226619471	226620030	+	0	NA	Intergenic	L1MC|LINE|L1	55318	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
210205	chr7	99109001	99109500	+	0	NA	intron (NM_181349, intron 1 of 17)	intron (NM_181349, intron 1 of 17)	34858	NM_181349	57154		NM_020429	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
216342	chr8	15561451	15561630	+	0	NA	intron (NM_001356429, intron 1 of 10)	L1PA2|LINE|L1	21277	NM_001356429	7991		NM_006765	ENSG00000104723	TUSC3	D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2	tumor suppressor candidate 3	protein-coding
117472	chr19	19753071	19753680	+	0	NA	Intergenic	Intergenic	-20263	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
1204	chr1	2254001	2254200	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	25781	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
51243	chr12	50987001	50987380	+	0	NA	non-coding (NR_033421, exon 16 of 16)	non-coding (NR_033421, exon 16 of 16)	22025	NM_001174130	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
102948	chr17	76682551	76682850	+	0	NA	intron (NR_130928, intron 3 of 3)	intron (NR_130928, intron 3 of 3)	5963	NM_001363769	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
10284	chr1	64839271	64839780	+	0	NA	intron (NM_001321857, intron 20 of 24)	intron (NM_001321857, intron 20 of 24)	94450	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
29623	chr10	71771471	71772600	+	0	NA	intron (NM_022153, intron 1 of 6)	intron (NM_022153, intron 1 of 6)	1485	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
204384	chr7	3011151	3011480	+	0	NA	intron (NM_001324281, intron 1 of 25)	intron (NM_001324281, intron 1 of 25)	32552	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
200813	chr6	137911771	137911930	+	0	NA	Intergenic	Intergenic	33950	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
72655	chr15	38515671	38515900	+	0	NA	intron (NM_001128602, intron 6 of 15)	intron (NM_001128602, intron 6 of 15)	49029	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
189616	chr5	175975721	175976380	+	0	NA	Intergenic	L1MB3|LINE|L1	-7735	NM_032361	84321		NM_032361	ENSG00000051596	THOC3	THO3|hTREX45	THO complex subunit 3	protein-coding
46611	chr11	128579821	128580180	+	0	NA	intron (NM_001143820, intron 1 of 9)	L2c|LINE|L2	7558	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
149585	chr21	33260051	33260450	+	0	NA	intron (NM_001289128, intron 7 of 7)	MER3|DNA|hAT-Charlie	6010	NR_038974	100288432		NR_038974		IL10RB-DT	IFNAR2-AS1|IL10RB-AS1	IL10RB divergent transcript	ncRNA
201631	chr6	149452601	149453130	+	0	NA	intron (NM_207360, intron 4 of 5)	intron (NM_207360, intron 4 of 5)	32149	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
188299	chr5	151154651	151154830	+	0	NA	intron (NM_001363114, intron 1 of 24)	L3b|LINE|CR1	3039	NM_001155	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
54081	chr12	76049651	76049750	+	0	NA	intron (NM_001307924, intron 13 of 13)	intron (NM_001307924, intron 13 of 13)	-17924	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
129271	chr2	68404271	68404500	+	0	NA	Intergenic	Intergenic	39103	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
177278	chr4	109547051	109547750	+	0	NA	Intergenic	Intergenic	-12846	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
184467	chr5	100731751	100732150	+	0	NA	Intergenic	Intergenic	84615	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
50792	chr12	49051371	49052050	+	0	NA	exon (NM_003482, exon 11 of 55)	exon (NM_003482, exon 11 of 55)	9084	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
134313	chr2	136015551	136016050	+	0	NA	Intergenic	Intergenic	-30116	NM_001293312	1615		NM_001349	ENSG00000115866	DARS1	DARS|HBSL|aspRS	aspartyl-tRNA synthetase 1	protein-coding
23544	chr1	229253051	229254030	+	0	NA	Intergenic	Intergenic	-17522	NR_073545	5867		NM_004578	ENSG00000168118	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
27746	chr10	35191651	35191750	+	0	NA	intron (NM_183011, intron 5 of 6)	intron (NM_183011, intron 5 of 6)	-3427	NM_001267569	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
130884	chr2	87418521	87419480	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-36427	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
137098	chr2	190949501	190949700	+	0	NA	intron (NM_014905, intron 14 of 17)	AluSz|SINE|Alu	64571	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
97308	chr17	43233071	43235580	+	0	NA	promoter-TSS (NR_002716)	promoter-TSS (NR_002716)	-348	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
83968	chr16	29223921	29224350	+	0	NA	Intergenic	Intergenic	-78152	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
212209	chr7	118216171	118216480	+	0	NA	Intergenic	MER89|LTR|ERV1	-8379	NM_019644	56311		NM_019644	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
40857	chr11	65079551	65079850	+	0	NA	exon (NM_080668, exon 5 of 6)	exon (NM_080668, exon 5 of 6)	4340	NM_080668	113130		NM_080668	ENSG00000146670	CDCA5	SORORIN	cell division cycle associated 5	protein-coding
189134	chr5	171264751	171265130	+	0	NA	intron (NM_022897, intron 24 of 27)	intron (NM_022897, intron 24 of 27)	-44308	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
70556	chr14	102556471	102557080	+	0	NA	TTS (NR_146561)	TTS (NR_146561)	11521	NR_146561	105370681		NR_146561	ENSG00000259230	LINC02323	-	long intergenic non-protein coding RNA 2323	ncRNA
160653	chr3	31578121	31578380	+	0	NA	intron (NM_178862, intron 2 of 15)	intron (NM_178862, intron 2 of 15)	45325	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
144597	chr20	35801651	35801950	+	0	NA	intron (NM_016436, intron 2 of 17)	intron (NM_016436, intron 2 of 17)	29785	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
124963	chr2	8682901	8683800	+	0	NA	intron (NM_002166, intron 2 of 2)	intron (NM_002166, intron 2 of 2)	1294	NM_002166	3398		NM_002166	ENSG00000115738	ID2	GIG8|ID2A|ID2H|bHLHb26	inhibitor of DNA binding 2	protein-coding
208607	chr7	72952851	72953150	+	0	NA	intron (NR_033323, intron 4 of 10)	L2c|LINE|L2	1763	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
146109	chr20	47895001	47895400	+	0	NA	Intergenic	D20S16|Satellite|Satellite	-88026	NR_109942	101060004		NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA
89032	chr16	88424771	88425380	+	0	NA	intron (NM_001367624, intron 2 of 2)	intron (NM_001367624, intron 2 of 2)	-28205	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
161556	chr3	42664301	42664500	+	0	NA	exon (NM_145166, exon 6 of 6)	exon (NM_145166, exon 6 of 6)	-10012	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
225579	chr9	36042471	36042830	+	0	NA	intron (NM_021111, intron 1 of 20)	L1PB1|LINE|L1	5737	NM_021111	8434		NM_021111	ENSG00000122707	RECK	ST15	reversion inducing cysteine rich protein with kazal motifs	protein-coding
138609	chr2	208363501	208363750	+	0	NA	intron (NR_163994, intron 1 of 14)	L1PA15|LINE|L1	3933	NR_163994	5746		NM_005048	ENSG00000144407	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
142293	chr20	3244071	3244230	+	0	NA	Intergenic	AluJr|SINE|Alu	-4960	NR_135000	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
69692	chr14	98170371	98170780	+	0	NA	Intergenic	Intergenic	-192451	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
160903	chr3	33833871	33834230	+	0	NA	intron (NM_013374, intron 7 of 17)	intron (NM_013374, intron 7 of 17)	35420	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
117104	chr19	19194701	19194900	+	0	NA	intron (NM_134440, intron 3 of 8)	AluJb|SINE|Alu	1865	NM_001370234	8625		NM_003721	ENSG00000064490	RFXANK	ANKRA1|BLS|F14150_1|RFX-B	regulatory factor X associated ankyrin containing protein	protein-coding
127151	chr2	37851521	37852300	+	0	NA	intron (NR_110012, intron 2 of 3)	intron (NR_110012, intron 2 of 3)	-22199	NR_110011	101929559		NR_110011	ENSG00000237803	PIRAT1	LINC00211|NCRNA00211|PIRAT	PU.1 (SPI1) induced regulator of S100A8 and S100A9 alarmin transcription 1	ncRNA
45383	chr11	118313501	118313900	+	0	NA	intron (NM_000733, intron 6 of 8)	intron (NM_000733, intron 6 of 8)	8970	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
179158	chr4	169759051	169759350	+	0	NA	Intergenic	AluY|SINE|Alu	-1256	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
138959	chr2	218262701	218263000	+	0	NA	exon (NM_001321950, exon 2 of 2)	exon (NM_001321950, exon 2 of 2)	1835	NM_170699	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
204017	chr7	1912501	1912900	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	27871	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
216193	chr8	11847201	11847930	+	0	NA	intron (NM_001384728, intron 8 of 10)	intron (NM_001384728, intron 8 of 10)	20522	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
134019	chr2	131039821	131040650	+	0	NA	intron (NM_001375902, intron 4 of 10)	CpG-16595	52927	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
26608	chr10	22315721	22317100	+	0	NA	promoter-TSS (NM_012071)	promoter-TSS (NM_012071)	22	NM_012071	23412		NM_012071	ENSG00000148444	COMMD3	BUP|C10orf8	COMM domain containing 3	protein-coding
208957	chr7	74185721	74185980	+	0	NA	intron (NM_022170, intron 1 of 6)	MER75A|DNA|PiggyBac	-5348	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
99085	chr17	48996321	48996680	+	0	NA	promoter-TSS (NM_006546)	promoter-TSS (NM_006546)	-885	NM_006546	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
126741	chr2	30209321	30210030	+	0	NA	Intergenic	AluJo|SINE|Alu	-21859	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
3395	chr1	15738121	15738380	+	0	NA	intron (NM_207348, intron 3 of 4)	intron (NM_207348, intron 3 of 4)	1992	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
137066	chr2	190902321	190902730	+	0	NA	intron (NM_014905, intron 5 of 17)	Tigger18a|DNA|TcMar-Tigger	21704	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
175046	chr4	52983621	52983880	+	0	NA	intron (NM_152540, intron 5 of 8)	intron (NM_152540, intron 5 of 8)	121433	NM_023940	65997		NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding
131707	chr2	97748321	97749400	+	0	NA	Intergenic	Intergenic	15560	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
201709	chr6	149712021	149712280	+	0	NA	intron (NM_001350339, intron 1 of 9)	intron (NM_001350339, intron 1 of 9)	4275	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
116943	chr19	18848921	18849780	+	0	NA	intron (NM_001297549, intron 3 of 23)	intron (NM_001297549, intron 3 of 23)	17391	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
164162	chr3	56778921	56779380	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-3433	NM_001377413	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
57717	chr12	122871451	122872700	+	0	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	24049	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
172132	chr4	1188601	1188800	+	0	NA	intron (NM_001199021, intron 1 of 7)	L1M4|LINE|L1	-15489	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
77187	chr15	80328921	80329000	+	0	NA	intron (NR_033833, intron 1 of 2)	intron (NR_033833, intron 1 of 2)	12845	NR_033833	283688		NR_033833	ENSG00000259361	LINC00927	-	long intergenic non-protein coding RNA 927	ncRNA
104214	chr17	80575101	80575700	+	0	NA	intron (NM_020761, intron 1 of 33)	L1ME3B|LINE|L1	30562	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
154410	chr22	35328921	35329530	+	0	NA	intron (NR_156428, intron 6 of 13)	AluSx|SINE|Alu	-6415	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
160754	chr3	32568021	32568530	+	0	NA	intron (NM_016141, intron 2 of 12)	intron (NM_016141, intron 2 of 12)	2583	NM_016141	51143		NM_016141	ENSG00000144635	DYNC1LI1	DLC-A|DLIC-1|DNCLI1|LIC1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding
176645	chr4	99935521	99935980	+	0	NA	intron (NM_001031723, intron 1 of 7)	intron (NM_001031723, intron 1 of 7)	10868	NM_001278311	79982		NM_024920	ENSG00000164031	DNAJB14	EGNR9427|PRO34683	DnaJ heat shock protein family (Hsp40) member B14	protein-coding
114490	chr19	12757301	12758330	+	0	NA	exon (NM_017682, exon 10 of 10)	exon (NM_017682, exon 10 of 10)	6024	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
147322	chr20	57748671	57749350	+	0	NA	Intergenic	Intergenic	-37474	NM_199171	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
18493	chr1	161660071	161660430	+	0	NA	Intergenic	Intergenic	-2865	NM_004001	2213		NM_004001	ENSG00000072694	FCGR2B	CD32|CD32B|FCG2|FCGR2|FCGR2C|FcGRIIB|FcRII-c|FcgammaRIIb|IGFR2	Fc gamma receptor IIb	protein-coding
232587	chr9	136402071	136402330	+	0	NA	3' UTR (NM_006643, exon 9 of 9)	3' UTR (NM_006643, exon 9 of 9)	-3763	NM_003086	6621		NM_003086	ENSG00000165684	SNAPC4	NEDRSO|PTFalpha|SNAP190	small nuclear RNA activating complex polypeptide 4	protein-coding
98670	chr17	47844221	47844480	+	0	NA	TTS (NM_001258248)	TTS (NM_001258248)	-3077	NM_138355	90507		NM_138355	ENSG00000141295	SCRN2	Ses2	secernin 2	protein-coding
184838	chr5	111507471	111508230	+	0	NA	intron (NR_131754, intron 1 of 4)	L2a|LINE|L2	-4376	NR_040093	100505678		NR_040093	ENSG00000246859	STARD4-AS1	-	STARD4 antisense RNA 1	ncRNA
102589	chr17	75893551	75894830	+	0	NA	intron (NM_173547, intron 1 of 5)	intron (NM_173547, intron 1 of 5)	2761	NM_001256124	201292		NM_173547	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
234912	chrX	34738921	34739000	+	0	NA	Intergenic	Intergenic	-81675	NM_031442	83604		NM_031442	ENSG00000147027	TMEM47	BCMP1|TM4SF10|VAB-9	transmembrane protein 47	protein-coding
238052	chrX	135519951	135521000	+	0	NA	promoter-TSS (NM_001351606)	promoter-TSS (NM_001351606)	-185	NM_001351601	203522		NM_182540	ENSG00000165359	INTS6L	DDX26B	integrator complex subunit 6 like	protein-coding
6329	chr1	27668801	27669950	+	0	NA	intron (NM_022872, intron 1 of 4)	intron (NM_022872, intron 1 of 4)	2817	NM_002038	2537		NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon alpha inducible protein 6	protein-coding
67176	chr14	68814021	68815280	+	0	NA	Intergenic	Intergenic	-18407	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
144411	chr20	35291121	35291380	+	0	NA	intron (NM_178468, intron 1 of 3)	MIR3|SINE|MIR	1175	NM_178468	128876		NM_178468	ENSG00000125998	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83 member C	protein-coding
114761	chr19	13652871	13653100	+	0	NA	Intergenic	LTR9A1|LTR|ERV1	-78767	NM_001320566	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
90639	chr17	1660821	1661550	+	0	NA	intron (NM_006445, intron 27 of 42)	intron (NM_006445, intron 27 of 42)	-11319	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
234283	chrX	13647521	13647980	+	0	NA	Intergenic	Intergenic	-5391	NM_001297564	170082		NM_152634	ENSG00000176896	TCEANC	TCEANC1	transcription elongation factor A N-terminal and central domain containing	protein-coding
174854	chr4	48665601	48666200	+	0	NA	intron (NM_015030, intron 3 of 63)	intron (NM_015030, intron 3 of 63)	114379	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
231135	chr9	129845151	129846200	+	0	NA	intron (NM_001008563, intron 1 of 25)	FRAM|SINE|Alu	10217	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
193819	chr6	31472751	31473450	+	0	NA	TTS (NR_002812)	TTS (NR_002812)	1871	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
202166	chr6	155313881	155315730	+	0	NA	promoter-TSS (NM_016020)	promoter-TSS (NM_016020)	-321	NR_146725	51106		NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
71304	chr14	105317921	105318230	+	0	NA	intron (NM_001100913, intron 1 of 24)	intron (NM_001100913, intron 1 of 24)	-2498	NM_001242787	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
196877	chr6	52049421	52049730	+	0	NA	intron (NM_170724, intron 22 of 60)	intron (NM_170724, intron 22 of 60)	38038	NM_138694	5314		NM_138694	ENSG00000170927	PKHD1	ARPKD|FCYT|FPC|PCYT|PKD4|TIGM1	PKHD1 ciliary IPT domain containing fibrocystin/polyductin	protein-coding
213532	chr7	139086471	139087050	+	0	NA	intron (NM_020119, intron 2 of 12)	THE1C|LTR|ERVL-MaLR	22960	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
62180	chr13	97432401	97433600	+	0	NA	Intergenic	CpG	-1169	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
102660	chr17	76078371	76078930	+	0	NA	promoter-TSS (NM_180990)	promoter-TSS (NM_180990)	-532	NM_180990	353174		NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding
120102	chr19	42135851	42136330	+	0	NA	intron (NR_038332, intron 2 of 2)	intron (NR_038332, intron 2 of 2)	-2577	NR_036208	100422980		NR_036208	ENSG00000266226	MIR4323	-	microRNA 4323	ncRNA
215621	chr7	159209271	159209830	+	0	NA	Intergenic	L2|LINE|L2	-64593	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
221661	chr8	125957751	125958050	+	0	NA	Intergenic	L2|LINE|L2	-6703	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
97161	chr17	42580271	42580630	+	0	NA	non-coding (NR_026697, exon 8 of 8)	non-coding (NR_026697, exon 8 of 8)	-2619	NR_045670	29893		NM_013290	ENSG00000131470	PSMC3IP	GT198|HOP2|HUMGT198A|ODG3|TBPIP	PSMC3 interacting protein	protein-coding
216240	chr8	12202501	12203430	+	0	NA	TTS (NR_146925)	TTS (NR_146925)	-8832	NR_148876	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
2357	chr1	9282871	9283580	+	0	NA	Intergenic	AluJr|SINE|Alu	-9669	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
125588	chr2	16662251	16662880	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	3269	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
14151	chr1	121118271	121118840	+	0	NA	promoter-TSS (NR_160943)	promoter-TSS (NR_160943)	71	NR_160943	106479023		NR_160940		H3P4	HIST2H3DP1|p05	H3 histone pseudogene 4	pseudo
188726	chr5	157393151	157393700	+	0	NA	3' UTR (NM_001291721, exon 30 of 30)	3' UTR (NM_001291721, exon 30 of 30)	-47748	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
131050	chr2	88349901	88350100	+	0	NA	Intergenic	Intergenic	102693	NM_001135649	344167		NM_001135649	ENSG00000214336	FOXI3	CFM2	forkhead box I3	protein-coding
235673	chrX	48596571	48596730	+	0	NA	promoter-TSS (NM_001347219)	promoter-TSS (NM_001347219)	-842	NR_029427	64743		NM_017883	ENSG00000101940	WDR13	MG21	WD repeat domain 13	protein-coding
133303	chr2	113656051	113656600	+	0	NA	Intergenic	L1PA4|LINE|L1	29059	NM_001306161	11159		NM_007082	ENSG00000144134	RABL2A	-	RAB, member of RAS oncogene family like 2A	protein-coding
128503	chr2	59910351	59910450	+	0	NA	Intergenic	Intergenic	472636	NR_132991	106660609		NR_132991	ENSG00000228590	MIR4432HG	-	MIR4432 host gene	ncRNA
167689	chr3	130182671	130182930	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-30020	NR_027898	646300		NR_027898		COL6A4P2	COL6A4	collagen type VI alpha 4 pseudogene 2	pseudo
142140	chr20	2748271	2748430	+	0	NA	intron (NR_138537, intron 7 of 17)	intron (NR_138537, intron 7 of 17)	52277	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
152141	chr22	19980301	19980900	+	0	NA	intron (NM_001670, intron 5 of 19)	intron (NM_001670, intron 5 of 19)	16847	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
225924	chr9	40510851	40511550	+	0	NA	intron (NR_136300, intron 3 of 3)	intron (NR_136300, intron 3 of 3)	11219	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
169487	chr3	169759101	169759700	+	0	NA	Intergenic	Intergenic	5660	NR_001566	7012		NR_001566	ENSG00000277925	TERC	DKCA1|PFBMFT2|SCARNA19|TER|TR|TRC3|hTR	telomerase RNA component	ncRNA
38373	chr11	44632851	44633150	+	0	NA	Intergenic	LTR78|LTR|ERV1	67337	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
97868	chr17	45021621	45022580	+	0	NA	Intergenic	CpG	29532	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
78215	chr15	90620171	90620730	+	0	NA	intron (NR_120372, intron 3 of 3)	intron (NR_120372, intron 3 of 3)	-39784	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
197780	chr6	87672471	87672630	+	0	NA	Intergenic	Intergenic	29683	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
211964	chr7	112765071	112765430	+	0	NA	non-coding (NR_109840, exon 4 of 4)	non-coding (NR_109840, exon 4 of 4)	25143	NM_022484	64418		NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
165399	chr3	97718971	97719480	+	0	NA	intron (NM_001080448, intron 14 of 17)	intron (NM_001080448, intron 14 of 17)	-45296	NM_032146	84100		NM_032146	ENSG00000113966	ARL6	BBS3|RP55	ADP ribosylation factor like GTPase 6	protein-coding
222713	chr8	141311451	141311950	+	0	NA	Intergenic	Intergenic	-3412	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
20109	chr1	192473651	192474380	+	0	NA	Intergenic	Intergenic	-101758	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
82029	chr16	12075451	12076280	+	0	NA	intron (NM_032167, intron 10 of 20)	L1PA3|LINE|L1	99131	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
175797	chr4	77807271	77807800	+	0	NA	intron (NM_001365006, intron 1 of 11)	L2c|LINE|L2	11529	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
12074	chr1	99004201	99005100	+	0	NA	exon (NM_001037317, exon 1 of 6)	exon (NM_001037317, exon 1 of 6)	211	NM_001037317	163404		NM_001010861	ENSG00000117598	PLPPR5	LPPR5|PAP2|PAP2D|PRG5	phospholipid phosphatase related 5	protein-coding
52469	chr12	55960201	55960600	+	0	NA	intron (NM_001200053, intron 1 of 8)	AluJb|SINE|Alu	5642	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
134980	chr2	152629371	152629530	+	0	NA	intron (NM_052905, intron 18 of 25)	intron (NM_052905, intron 18 of 25)	88011	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
167560	chr3	129396501	129397100	+	0	NA	TTS (NR_002992)	TTS (NR_002992)	548	NR_002992	677797		NR_002992	ENSG00000207088	SNORA7B	ACA7B	small nucleolar RNA, H/ACA box 7B	snoRNA
14858	chr1	146393621	146394180	+	0	NA	Intergenic	CpG	17093	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
38425	chr11	45095051	45095350	+	0	NA	intron (NM_001359633, intron 1 of 7)	intron (NM_001359633, intron 1 of 7)	1041	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
96831	chr17	41964021	41964980	+	0	NA	intron (NM_031421, intron 11 of 11)	intron (NM_031421, intron 11 of 11)	-2295	NM_033133	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
180070	chr5	1097621	1098800	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	13853	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
235774	chrX	49072851	49072950	+	0	NA	intron (NM_007213, intron 1 of 2)	intron (NM_007213, intron 1 of 2)	1102	NM_007213	11230		NM_007213	ENSG00000243279	PRAF2	JM4|Yip6a	PRA1 domain family member 2	protein-coding
204332	chr7	2734201	2734400	+	0	NA	TTS (NM_001384741)	TTS (NM_001384741)	28840	NM_001282440	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
28081	chr10	43364201	43364600	+	0	NA	Intergenic	AluSz|SINE|Alu	-7236	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
182843	chr5	69364401	69365000	+	0	NA	TTS (NM_003187)	TTS (NM_003187)	-4597	NM_133343	5884		NM_002873	ENSG00000152942	RAD17	CCYC|HRAD17|R24L|RAD17SP|RAD24	RAD17 checkpoint clamp loader component	protein-coding
212911	chr7	130903621	130904700	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	9150	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
76986	chr15	78272371	78272530	+	0	NA	intron (NM_018602, intron 3 of 7)	intron (NM_018602, intron 3 of 7)	6232	NM_001130183	55466		NM_018602	ENSG00000140403	DNAJA4	MST104|MSTP104|PRO1472	DnaJ heat shock protein family (Hsp40) member A4	protein-coding
224260	chr9	6007701	6009280	+	0	NA	promoter-TSS (NM_001017969)	promoter-TSS (NM_001017969)	-8	NM_001017969	158358		NM_001017969	ENSG00000183354	BRD10	KIAA2026	bromodomain containing 10	protein-coding
132762	chr2	109797551	109797800	+	0	NA	intron (NM_001384364, intron 1 of 22).2	AluSx3|SINE|Alu	3066	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
22845	chr1	225454771	225455530	+	0	NA	Intergenic	Intergenic	-26295	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
202578	chr6	158688801	158689650	+	0	NA	intron (NM_001318745, intron 3 of 14)	intron (NM_001318745, intron 3 of 14)	25822	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
43903	chr11	88801571	88801730	+	0	NA	intron (NM_001143831, intron 3 of 9)	intron (NM_001143831, intron 3 of 9)	262009	NM_000842	2915		NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
199410	chr6	116616051	116617480	+	0	NA	exon (NM_001161664, exon 1 of 5)	exon (NM_001161664, exon 1 of 5)	286	NM_001010892	345895		NM_001010892	ENSG00000111834	RSPH4A	CILD11|RSHL3|RSPH6B|dJ412I7.1	radial spoke head component 4A	protein-coding
167717	chr3	130949101	130949500	+	0	NA	intron (NM_001199181, intron 7 of 26)	Tigger1|DNA|TcMar-Tigger	54750	NM_014382	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
96138	chr17	39664521	39665030	+	0	NA	promoter-TSS (NM_003673)	promoter-TSS (NM_003673)	-574	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
151459	chr21	46184001	46185550	+	0	NA	promoter-TSS (NM_032261)	promoter-TSS (NM_032261)	-316	NM_032261	84221		NM_032261	ENSG00000160284	SPATC1L	C21orf56	spermatogenesis and centriole associated 1 like	protein-coding
66977	chr14	66495551	66496080	+	0	NA	intron (NR_024338, intron 8 of 10)	intron (NR_024338, intron 8 of 10)	9444	NR_024338	440184		NM_001004331	ENSG00000196553	CCDC196	C14orf53|LINC00238|NCRNA00238	coiled-coil domain containing 196	protein-coding
130832	chr2	87075321	87077580	+	0	NA	promoter-TSS (NR_026846)	promoter-TSS (NR_026846)	-37	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
222614	chr8	141039451	141039780	+	0	NA	Intergenic	L1MB3|LINE|L1	-37536	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
174366	chr4	38858571	38859000	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	-1968	NM_006068	10333		NM_006068	ENSG00000174130	TLR6	CD286	toll like receptor 6	protein-coding
63113	chr13	113324551	113324850	+	0	NA	TTS (NM_001286732)	TTS (NM_001286732)	-26973	NR_120385	100874068		NR_046541		GRTP1-AS1	-	GRTP1 antisense RNA 1	ncRNA
177319	chr4	109701871	109703950	+	0	NA	intron (NM_001226, intron 1 of 6)	CpG	535	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
70202	chr14	100552801	100553000	+	0	NA	intron (NM_001385102, intron 1 of 6)	intron (NM_001385102, intron 1 of 6)	-4773	NM_001385104	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
35634	chr11	1835801	1836750	+	0	NA	exon (NM_138567, exon 5 of 9)	exon (NM_138567, exon 5 of 9)	1848	NM_001290333	90019		NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
162336	chr3	47778571	47779150	+	0	NA	intron (NM_003074, intron 1 of 27)	AluJo|SINE|Alu	3033	NM_003074	6599		NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|HYC5|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
221805	chr8	127985301	127985500	+	0	NA	intron (NR_003367, intron 4 of 8)	AluSz6|SINE|Alu	-23498	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
4586	chr1	22074101	22074300	+	0	NA	5' UTR (NM_001039802, exon 2 of 7)	5' UTR (NM_001039802, exon 2 of 7)	21491	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
194809	chr6	34242521	34243350	+	0	NA	intron (NM_145899, intron 4 of 5)	intron (NM_145899, intron 4 of 5)	2262	NR_106893	102465502		NR_106893	ENSG00000276404	MIR6835	hsa-mir-6835	microRNA 6835	ncRNA
189182	chr5	171413351	171413780	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-6082	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
125949	chr2	25208951	25209400	+	0	NA	TTS (NR_132378)	TTS (NR_132378)	4862	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
82197	chr16	14976751	14977000	+	0	NA	intron (NM_001324019, intron 1 of 22)	intron (NM_001324019, intron 1 of 22)	1849	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
89345	chr16	88759221	88760350	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	17018	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
26877	chr10	25329751	25329850	+	0	NA	intron (NM_020752, intron 2 of 10)	intron (NM_020752, intron 2 of 10)	-153524	NR_027333	100128811		NR_027333	ENSG00000233642	GPR158-AS1	-	GPR158 antisense RNA 1	ncRNA
147220	chr20	57392501	57393930	+	0	NA	promoter-TSS (NR_149006)	promoter-TSS (NR_149006)	-159	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
233902	chrX	1604221	1604750	+	0	NA	intron (NM_004043, intron 1 of 9)	intron (NM_004043, intron 1 of 9)	9030	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
143401	chr20	29330951	29331250	+	0	NA	Intergenic	L1PA4|LINE|L1	85861	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
170600	chr3	186952801	186953500	+	0	NA	intron (NM_173216, intron 1 of 7)	L2a|LINE|L2	22624	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
178161	chr4	142358401	142359330	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	44268	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
153400	chr22	24802921	24803750	+	0	NA	Intergenic	L2a|LINE|L2	-2876	NM_001098497	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
222136	chr8	132326071	132326230	+	0	NA	intron (NM_004519, intron 1 of 14)	intron (NM_004519, intron 1 of 14)	121112	NM_001204824	3786		NM_004519	ENSG00000184156	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel subfamily Q member 3	protein-coding
177013	chr4	106315571	106317280	+	0	NA	promoter-TSS (NM_001163437)	promoter-TSS (NM_001163437)	-125	NM_001142416	9255		NM_004757	ENSG00000164022	AIMP1	EMAP2|EMAPII|HLD3|SCYE1|p43	aminoacyl tRNA synthetase complex interacting multifunctional protein 1	protein-coding
103204	chr17	77470951	77471900	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	-4210	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
66624	chr14	63737651	63738100	+	0	NA	Intergenic	Intergenic	-9810	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
122630	chr19	49821221	49821480	+	0	NA	intron (NM_030973, intron 3 of 17)	AluJb|SINE|Alu	3061	NM_030973	81857		NM_030973	ENSG00000104973	MED25	ACID1|ARC92|BVSYS|CMT2B2|P78|PTOV2|TCBAP0758	mediator complex subunit 25	protein-coding
57759	chr12	122978851	122979200	+	0	NA	intron (NM_001304835, intron 6 of 6)	intron (NM_001304835, intron 6 of 6)	-1035	NM_001002252	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
157221	chr22	43205121	43205380	+	0	NA	intron (NM_173050, intron 21 of 21)	intron (NM_173050, intron 21 of 21)	-7424	NR_134632	105373051		NR_134632	ENSG00000236272	SCUBE1-AS2	-	SCUBE1 antisense RNA 2	ncRNA
71864	chr15	22283151	22283530	+	0	NA	TTS (NR_033735)	TTS (NR_033735)	24726	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
148849	chr21	8414601	8415800	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	-17330	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
184225	chr5	96434171	96434480	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-1077	NM_000439	5122		NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC1/3|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
233652	chrX	985651	985750	+	0	NA	Intergenic	AluY|SINE|Alu	226949	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
62945	chr13	111389121	111389380	+	0	NA	Intergenic	Intergenic	68608	NM_152324	121793		NM_152324	ENSG00000153495	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
170950	chr3	194395771	194396550	+	0	NA	3' UTR (NM_004488, exon 2 of 2)	3' UTR (NM_004488, exon 2 of 2)	3106	NM_004488	2814		NM_004488	ENSG00000178732	GP5	CD42d|GPV	glycoprotein V platelet	protein-coding
190307	chr5	179603351	179604100	+	0	NA	promoter-TSS (NR_110560).2	promoter-TSS (NR_110560).2	16	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
174398	chr4	39184021	39184330	+	0	NA	intron (NM_001317924, intron 1 of 35)	AluSz|SINE|Alu	1646	NM_025132	57728		NM_025132	ENSG00000157796	WDR19	ATD5|CED4|CFAP66|DYF-2|FAP66|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SPGF72|SRTD5	WD repeat domain 19	protein-coding
203007	chr6	163413101	163415400	+	0	NA	promoter-TSS (NM_006775)	promoter-TSS (NM_006775)	-300	NR_037593	100526820		NR_037593	ENSG00000270419	CAHM	LINC00468	colon adenocarcinoma hypermethylated	ncRNA
104933	chr17	81927101	81930230	+	0	NA	promoter-TSS (NM_002359)	promoter-TSS (NM_002359)	836	NR_015454	92659		NR_015454	ENSG00000265688	MILIP	MAFG-AS1|MAFG-DT	MYC inducible lncRNA inactivating p53	ncRNA
61020	chr13	48152321	48152580	+	0	NA	Intergenic	MamRep4096|DNA|hAT?	-57309	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
133009	chr2	111632621	111633250	+	0	NA	Intergenic	Intergenic	-137774	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
113928	chr19	10722051	10722150	+	0	NA	intron (NM_001005362, intron 1 of 19)	intron (NM_001005362, intron 1 of 19)	3696	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
236521	chrX	72099871	72100400	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	31780	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
11382	chr1	89657421	89658530	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	24855	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
35353	chr11	1227951	1228650	+	0	NA	intron (NM_002458, intron 7 of 48)	intron (NM_002458, intron 7 of 48)	5234	NM_002458	727897		NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
29525	chr10	70821421	70821680	+	0	NA	intron (NM_003901, intron 2 of 14)	MER20|DNA|hAT-Charlie	5602	NM_003901	8879		NM_003901	ENSG00000166224	SGPL1	NPHS14|RENI|S1PL|SPL	sphingosine-1-phosphate lyase 1	protein-coding
172184	chr4	1238851	1238950	+	0	NA	intron (NM_001377186, intron 1 of 8)	intron (NM_001377186, intron 1 of 8)	9828	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
39779	chr11	61923351	61923450	+	0	NA	Intergenic	Intergenic	-3116	NM_001271686	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
33499	chr10	119133301	119133700	+	0	NA	intron (NM_207009, intron 8 of 8)	L2a|LINE|L2	29387	NM_001303111	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
72553	chr15	34403251	34403730	+	0	NA	intron (NM_001368072, intron 4 of 23)	MIRb|SINE|MIR	-13722	NM_181077	23015		NM_015003	ENSG00000175265	GOLGA8A	CFAP286|FAP286|GM88|GOLGA8B	golgin A8 family member A	protein-coding
216573	chr8	21934371	21934530	+	0	NA	intron (NM_001362802, intron 1 of 26)	AluSp|SINE|Alu	14788	NM_001362802	23039		NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
219770	chr8	81104201	81105350	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	7293	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
225042	chr9	33158471	33160380	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-7523	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
4398	chr1	21022351	21023250	+	0	NA	intron (NM_001198801, intron 4 of 34)	intron (NM_001198801, intron 4 of 34)	-34368	NR_031657	100302155		NR_031657	ENSG00000221808	MIR1256	MIRN1256|hsa-mir-1256	microRNA 1256	ncRNA
40819	chr11	64928171	64928400	+	0	NA	intron (NM_006244, intron 5 of 13)	intron (NM_006244, intron 5 of 13)	3596	NM_006244	5526		NM_006244	ENSG00000068971	PPP2R5B	B56B|B56beta|PR61B	protein phosphatase 2 regulatory subunit B'beta	protein-coding
30887	chr10	86962351	86963100	+	0	NA	intron (NM_003087, intron 4 of 4)	intron (NM_003087, intron 4 of 4)	4126	NM_003087	6623		NM_003087	ENSG00000173267	SNCG	BCSG1|SR	synuclein gamma	protein-coding
144177	chr20	34106451	34106550	+	0	NA	intron (NM_003908, intron 1 of 8)	AluJb|SINE|Alu	5743	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
83172	chr16	23472901	23473300	+	0	NA	intron (NM_015044, intron 14 of 16)	L1ME4a|LINE|L1	-19911	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
164495	chr3	60086871	60087060	+	0	NA	intron (NM_001166243, intron 5 of 9)	MSTB1-int|LTR|ERVL-MaLR	-6056	NM_001320901	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
225199	chr9	34069251	34069350	+	0	NA	Intergenic	AluSz6|SINE|Alu	-20101	NM_001370059	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
11518	chr1	90967471	90968030	+	0	NA	intron (NM_201269, intron 2 of 5)	intron (NM_201269, intron 2 of 5)	53758	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
165093	chr3	71493201	71495150	+	0	NA	intron (NM_001012505, intron 2 of 6)	MIR3|SINE|MIR	47914	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
213584	chr7	139370451	139370950	+	0	NA	intron (NM_016019, intron 1 of 9)	AluSx|SINE|Alu	10806	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
56551	chr12	116916721	116917450	+	0	NA	intron (NM_153348, intron 1 of 10)	MLT1H|LTR|ERVL-MaLR	6129	NM_012174	26259		NM_012174	ENSG00000174989	FBXW8	FBW6|FBW8|FBX29|FBXO29|FBXW6	F-box and WD repeat domain containing 8	protein-coding
3879	chr1	17008851	17009550	+	0	NA	intron (NM_001141974, intron 1 of 26)	intron (NM_001141974, intron 1 of 26)	2728	NM_001141974	23400		NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9|SPG78	ATPase cation transporting 13A2	protein-coding
158526	chr3	3173351	3174680	+	0	NA	intron (NM_016302, intron 3 of 10)	intron (NM_016302, intron 3 of 10)	5676	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
75674	chr15	67821851	67822250	+	0	NA	Intergenic	Intergenic	-3459	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
186751	chr5	139312301	139313250	+	0	NA	intron (NM_199189, intron 5 of 17)	AluSq2|SINE|Alu	19025	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
163156	chr3	50159221	50159600	+	0	NA	intron (NM_001318800, intron 1 of 17)	intron (NM_001318800, intron 1 of 17)	391	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
203834	chr7	1429771	1429930	+	0	NA	Intergenic	Intergenic	29620	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
154145	chr22	31269321	31269580	+	0	NA	intron (NM_005569, intron 11 of 15)	intron (NM_005569, intron 11 of 15)	21066	NM_001031801	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
75715	chr15	68112101	68112500	+	0	NA	intron (NM_001320687, intron 3 of 14)	L2-3_Crp|LINE|L2	57724	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
24036	chr1	235280371	235280830	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-46616	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
55185	chr12	100717621	100717700	+	0	NA	Intergenic	CpG	-77116	NM_001286615	121601		NM_178826	ENSG00000151572	ANO4	TMEM16D	anoctamin 4	protein-coding
39259	chr11	57739221	57739730	+	0	NA	intron (NR_144933, intron 6 of 6)	intron (NR_144933, intron 6 of 6)	-1775	NM_001321335	280636		NM_170746	ENSG00000211450	SELENOH	C11orf31|C17orf10|SELH	selenoprotein H	protein-coding
187141	chr5	140543751	140544050	+	0	NA	intron (NM_020690, intron 34 of 35)	AluSz|SINE|Alu	-3762	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
190665	chr5	181256101	181256500	+	0	NA	3' UTR (NM_001346051, exon 2 of 2)	3' UTR (NM_001346051, exon 2 of 2)	4843	NM_001346048	84851		NM_032765	ENSG00000183718	TRIM52	RNF102	tripartite motif containing 52	protein-coding
87921	chr16	79269271	79270250	+	0	NA	Intergenic	Intergenic	330977	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
90932	chr17	2611471	2612000	+	0	NA	intron (NM_000430, intron 1 of 10)	intron (NM_000430, intron 1 of 10)	18081	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
171209	chr3	195744751	195745050	+	0	NA	Intergenic	Intergenic	23922	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
51012	chr12	49698671	49699730	+	0	NA	intron (NM_175736, intron 1 of 25)	intron (NM_175736, intron 1 of 25)	8205	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
197852	chr6	88965601	88965800	+	0	NA	Intergenic	AluJb|SINE|Alu	-2082	NM_001286428	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
80985	chr16	3965201	3965630	+	0	NA	3' UTR (NM_001116, exon 11 of 11)	3' UTR (NM_001116, exon 11 of 11)	-14971	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
195638	chr6	37858471	37858630	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	38823	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
239171	chrY	12395571	12395730	+	0	NA	Intergenic	Intergenic	25940	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
69999	chr14	100062351	100062880	+	0	NA	intron (NM_001330221, intron 1 of 13)	L1MEf|LINE|L1	-2807	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
231429	chr9	131236821	131237130	+	0	NA	Intergenic	Intergenic	39535	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
101427	chr17	67407451	67408380	+	0	NA	intron (NM_181671, intron 1 of 9)	U13_|snRNA|snRNA	30634	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
20936	chr1	202205951	202206130	+	0	NA	intron (NM_021636, intron 1 of 17)	intron (NM_021636, intron 1 of 17)	2328	NM_021636	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
94032	chr17	27294801	27295330	+	0	NA	intron (NM_134265, intron 1 of 6)	intron (NM_134265, intron 1 of 6)	951	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
78333	chr15	90996101	90997300	+	0	NA	Intergenic	AluJb|SINE|Alu	-2165	NM_003981	9055		NM_003981	ENSG00000198901	PRC1	ASE1|MAP65	protein regulator of cytokinesis 1	protein-coding
219123	chr8	66026471	66027030	+	0	NA	intron (NR_146171, intron 1 of 6)	intron (NR_146171, intron 1 of 6)	5197	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
228335	chr9	98806471	98806630	+	0	NA	Intergenic	Intergenic	-1120	NM_024642	79695		NM_024642	ENSG00000119514	GALNT12	CRCS1|GalNAc-T12	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding
233535	chrX	227231	227530	+	0	NA	Intergenic	CpG	-48976	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
86653	chr16	67459251	67459950	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	21557	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
157843	chr22	48185601	48186000	+	0	NA	Intergenic	Intergenic	-88564	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	ncRNA
211132	chr7	102536221	102536700	+	0	NA	Intergenic	Intergenic	8328	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
190801	chr6	1316401	1317380	+	0	NA	Intergenic	CpG	4792	NM_033260	94234		NM_033260	ENSG00000164379	FOXQ1	HFH1	forkhead box Q1	protein-coding
57279	chr12	121632951	121633550	+	0	NA	intron (NM_032790, intron 2 of 2)	intron (NM_032790, intron 2 of 2)	6700	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
92710	chr17	14194021	14194300	+	0	NA	intron (NM_001303, intron 6 of 6)	intron (NM_001303, intron 6 of 6)	42702	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
2585	chr1	9827721	9828450	+	0	NA	Intergenic	Intergenic	-3559	NM_014944	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
6897	chr1	31576321	31576830	+	0	NA	promoter-TSS (NM_022164)	promoter-TSS (NM_022164)	60	NM_022164	64129		NM_022164	ENSG00000142910	TINAGL1	ARG1|LCN7|LIECG3|TINAGRP	tubulointerstitial nephritis antigen like 1	protein-coding
214915	chr7	151471871	151472450	+	0	NA	intron (NM_005614, intron 4 of 7)	MER63B|DNA|hAT-Blackjack	-31347	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
82399	chr16	16154171	16154330	+	0	NA	intron (NR_147784, intron 27 of 28)	intron (NR_147784, intron 27 of 28)	69221	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
218055	chr8	38897501	38897900	+	0	NA	Intergenic	Intergenic	-3646	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
84085	chr16	29609371	29609680	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	4192	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
164982	chr3	71309421	71309900	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-4889	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
137562	chr2	197246171	197246930	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	48559	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
175542	chr4	74675671	74675900	+	0	NA	Intergenic	Intergenic	118738	NM_001316963	685		NM_001729	ENSG00000174808	BTC	-	betacellulin	protein-coding
207778	chr7	50207651	50207750	+	0	NA	Intergenic	Intergenic	-96364	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
79568	chr16	983801	984500	+	0	NA	intron (NM_014587, intron 2 of 2)	CpG-8928	2380	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
110228	chr19	1763301	1763500	+	0	NA	intron (NM_001080488, intron 1 of 1)	AluJr|SINE|Alu	9894	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
61390	chr13	51533671	51533830	+	0	NA	Intergenic	AluJb|SINE|Alu	-18839	NR_039852	100616423		NR_039852	ENSG00000266611	MIR4703	-	microRNA 4703	ncRNA
149654	chr21	33551901	33552880	+	0	NA	non-coding (NR_103797, exon 3 of 13)	non-coding (NR_103797, exon 3 of 13)	1728	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
116457	chr19	18073201	18074030	+	0	NA	intron (NM_153701, intron 7 of 9)	intron (NM_153701, intron 7 of 9)	13319	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
237251	chrX	110217371	110217550	+	0	NA	intron (NM_001025580, intron 1 of 4)	intron (NM_001025580, intron 1 of 4)	7600	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
164213	chr3	56894921	56895680	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	21136	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
6595	chr1	28766271	28766430	+	0	NA	intron (NM_016258, intron 4 of 4)	AluJb|SINE|Alu	29410	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
153622	chr22	28663451	28663750	+	0	NA	intron (NM_001145418, intron 1 of 22)	L1HS|LINE|L1	16265	NM_001145418	23331		NM_015281	ENSG00000100154	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
100753	chr17	63950201	63950400	+	0	NA	intron (NM_000334, intron 14 of 23)	MIRb|SINE|MIR	-17969	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
183388	chr5	77643171	77644180	+	0	NA	Intergenic	Intergenic	-4962	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
2887	chr1	11647601	11648150	+	0	NA	TTS (NM_012168)	TTS (NM_012168)	-6532	NM_183412	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
135726	chr2	169363451	169363870	+	0	NA	Intergenic	Intergenic	-1126	NM_004525	4036		NM_004525	ENSG00000081479	LRP2	DBS|GP330|LRP-2	LDL receptor related protein 2	protein-coding
182221	chr5	56853551	56854050	+	0	NA	intron (NM_005921, intron 1 of 19)	L2a|LINE|L2	38251	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
19037	chr1	169690001	169690730	+	0	NA	TTS (NR_029467)	TTS (NR_029467)	18492	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
61365	chr13	51253001	51253200	+	0	NA	3' UTR (NM_001330522, exon 3 of 3)	3' UTR (NM_001330522, exon 3 of 3)	30702	NM_001242312	220108		NM_145019	ENSG00000150510	FAM124A	-	family with sequence similarity 124 member A	protein-coding
170422	chr3	185591471	185591630	+	0	NA	intron (NM_021627, intron 2 of 16)	AluY|SINE|Alu	5255	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
29899	chr10	73127221	73127480	+	0	NA	intron (NM_001283015, intron 7 of 7)	AluSg4|SINE|Alu	-1143	NR_145776	109617000		NR_145776	ENSG00000221164	SNORA11F	-	small nucleolar RNA, H/ACA box 11F	snoRNA
149904	chr21	36129051	36129350	+	0	NA	Intergenic	Intergenic	-2560	NR_040084	100133286		NR_040084	ENSG00000230212	CBR1-AS1	-	CBR1 antisense RNA 1	ncRNA
161052	chr3	38020221	38020480	+	0	NA	exon (NM_001130964, exon 2 of 15)	exon (NM_001130964, exon 2 of 15)	4170	NM_001130964	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
40443	chr11	64202921	64203180	+	0	NA	intron (NM_001282653, intron 11 of 13)	intron (NM_001282653, intron 11 of 13)	-2870	NM_001382448	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
202986	chr6	161829401	161829600	+	0	NA	intron (NM_013987, intron 5 of 10)	intron (NM_013987, intron 5 of 10)	358523	NR_134594	105378098		NR_134593		LOC105378098	-	uncharacterized LOC105378098	ncRNA
226480	chr9	71754221	71754480	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	14163	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
60836	chr13	45421851	45422230	+	0	NA	Intergenic	Intergenic	-3585	NM_001286806	253512		NM_001010875	ENSG00000174032	SLC25A30	KMCP1	solute carrier family 25 member 30	protein-coding
79739	chr16	1335621	1336730	+	0	NA	promoter-TSS (NM_001199096)	promoter-TSS (NM_001199096)	-22	NM_001199096	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
9743	chr1	53280071	53280430	+	0	NA	intron (NM_001018054, intron 4 of 17)	intron (NM_001018054, intron 4 of 17)	41640	NR_038953	100507564		NR_038953	ENSG00000226754	MAGOH-DT	-	MAGOH divergent transcript	ncRNA
168135	chr3	138939401	138940300	+	0	NA	intron (NR_121649, intron 2 of 2)	CpG	4170	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
127885	chr2	46080051	46080150	+	0	NA	intron (NM_005400, intron 10 of 14)	intron (NM_005400, intron 10 of 14)	-217307	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
186939	chr5	139643201	139644250	+	0	NA	Intergenic	Intergenic	-3574	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
162517	chr3	48588721	48589000	+	0	NA	intron (NM_000094, intron 19 of 118)	intron (NM_000094, intron 19 of 118)	6469	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
213036	chr7	131041401	131041600	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	65530	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
91047	chr17	2906171	2906330	+	0	NA	intron (NM_001100398, intron 3 of 23)	intron (NM_001100398, intron 3 of 23)	59645	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
54844	chr12	95117021	95117500	+	0	NA	intron (NM_018351, intron 8 of 20)	intron (NM_018351, intron 8 of 20)	-43642	NM_001032287	7181		NM_003297	ENSG00000120798	NR2C1	TR2	nuclear receptor subfamily 2 group C member 1	protein-coding
100654	chr17	63700701	63701500	+	0	NA	promoter-TSS (NM_030576)	promoter-TSS (NM_030576)	762	NR_046273	729683		NR_046273		LOC729683	-	uncharacterized LOC729683	ncRNA
3529	chr1	16071871	16072580	+	0	NA	intron (NM_182623, intron 1 of 6)	intron (NM_182623, intron 1 of 6)	1426	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
160830	chr3	33058871	33059230	+	0	NA	intron (NM_000404, intron 5 of 15)	MER20|DNA|hAT-Charlie	37782	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
86334	chr16	66426321	66428680	+	0	NA	intron (NM_001136106, intron 1 of 3)	CpG	205	NM_001197225	146227		NM_001136106	ENSG00000166546	BEAN1	BEAN|SCA31	brain expressed associated with NEDD4 1	protein-coding
121235	chr19	46648101	46648750	+	0	NA	3' UTR (NM_145056, exon 4 of 4)	3' UTR (NM_145056, exon 4 of 4)	6293	NM_001301046	147906		NM_145056	ENSG00000197380	DACT3	DAPPER3|RRR1	dishevelled binding antagonist of beta catenin 3	protein-coding
4167	chr1	19392191	19392400	+	0	NA	intron (NM_001313932, intron 2 of 4)	intron (NM_001313932, intron 2 of 4)	79969	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
13601	chr1	116374701	116375630	+	0	NA	intron (NM_001160233, intron 1 of 22)	intron (NM_001160233, intron 1 of 22)	1298	NM_001160233	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
149753	chr21	34618571	34618730	+	0	NA	Intergenic	AluSx|SINE|Alu	-3537	NM_004414	1827		NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
103810	chr17	79090421	79090880	+	0	NA	3' UTR (NM_001350451, exon 15 of 15)	3' UTR (NM_001350451, exon 15 of 15)	15826	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
148876	chr21	8446501	8447420	+	0	NA	TTS (NR_003287).4	TTS (NR_003287).4	5814	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
146550	chr20	49987101	49987600	+	0	NA	intron (NM_005985, intron 2 of 2)	intron (NM_005985, intron 2 of 2)	4370	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
137475	chr2	197113071	197114080	+	0	NA	intron (NM_153697, intron 8 of 9)	intron (NM_153697, intron 8 of 9)	-84416	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
236345	chrX	70132271	70132430	+	0	NA	Intergenic	Intergenic	-1097	NM_001370192	3476		NM_001551	ENSG00000089289	IGBP1	ALPHA-4|IBP1|MRXS28|alpha4	immunoglobulin binding protein 1	protein-coding
124183	chr19	56151001	56151200	+	0	NA	intron (NM_018337, intron 3 of 4)	intron (NM_018337, intron 3 of 4)	9813	NM_001253792	55311		NM_018337	ENSG00000167685	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
162491	chr3	48567521	48567980	+	0	NA	exon (NM_000094, exon 108 of 119)	exon (NM_000094, exon 108 of 119)	-3969	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
20307	chr1	197356921	197357200	+	0	NA	intron (NM_201253, intron 5 of 11)	intron (NM_201253, intron 5 of 11)	88808	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
75927	chr15	70103871	70104230	+	0	NA	Intergenic	Intergenic	-6133	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
230202	chr9	127811971	127812330	+	0	NA	intron (NR_110170, intron 14 of 14)	AluJb|SINE|Alu	-3916	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
19814	chr1	182617571	182617730	+	0	NA	Intergenic	MIRc|SINE|MIR	2510	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
238556	chrX	153796271	153796430	+	0	NA	intron (NR_037927, intron 3 of 7)	intron (NR_037927, intron 3 of 7)	1682	NM_006280	6748		NM_006280	ENSG00000180879	SSR4	CDG1Y|TRAPD	signal sequence receptor subunit 4	protein-coding
192669	chr6	26218851	26218950	+	0	NA	Intergenic	Intergenic	1979	NM_021052	3012		NM_021052	ENSG00000277075	H2AC8	H2A.1|H2A.2|H2A/a|H2AC4|H2AFA|HIST1H2AE	H2A clustered histone 8	protein-coding
223356	chr8	143863251	143863550	+	0	NA	exon (NM_031308, exon 2 of 2)	exon (NM_031308, exon 2 of 2)	15067	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
236870	chrX	80841351	80841450	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-31523	NM_153252	254065		NM_153252	ENSG00000165288	BRWD3	BRODL|MRX93|XLID93	bromodomain and WD repeat domain containing 3	protein-coding
162760	chr3	49061871	49062980	+	0	NA	intron (NM_001320580, intron 3 of 10)	AluSz|SINE|Alu	31207	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
59440	chr13	25874851	25875450	+	0	NA	intron (NM_016529, intron 33 of 36)	L1MB2|LINE|L1	176866	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
100904	chr17	64417971	64418130	+	0	NA	Intergenic	AluJr|SINE|Alu	-27190	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
156551	chr22	41437801	41438380	+	0	NA	intron (NM_016272, intron 1 of 1)	intron (NM_016272, intron 1 of 1)	8711	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
45438	chr11	118433501	118433700	+	0	NA	Intergenic	AluYe5|SINE|Alu	-2892	NM_001197104	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
78654	chr15	94295171	94295530	+	0	NA	intron (NM_001385002, intron 2 of 23)	intron (NM_001385002, intron 2 of 23)	-60580	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
209675	chr7	80078201	80078600	+	0	NA	Intergenic	L2c|LINE|L2	-56431	NM_002069	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
174730	chr4	42717001	42717200	+	0	NA	Intergenic	LTR50|LTR|ERVL	-59995	NM_001105529	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
14410	chr1	144302751	144303050	+	0	NA	promoter-TSS (NR_136328)	promoter-TSS (NR_136328)	-359	NR_136328	101927429		NR_136328		KMT2CP1	-	lysine methyltransferase 2C pseudogene 1	pseudo
227513	chr9	91361271	91362800	+	0	NA	promoter-TSS (NM_001351431)	promoter-TSS (NM_001351431)	-66	NM_001306190	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
173250	chr4	6986471	6988080	+	0	NA	promoter-TSS (NM_001113363)	promoter-TSS (NM_001113363)	66	NM_001113363	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
131444	chr2	96319321	96319930	+	0	NA	Intergenic	AluJb|SINE|Alu	-5692	NM_001008949	150771		NM_178495	ENSG00000198885	ITPRIPL1	D1B|KIAA1754L	ITPRIP like 1	protein-coding
36797	chr11	9534851	9535390	+	0	NA	Intergenic	Intergenic	-38550	NM_003390	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
208443	chr7	66877821	66878280	+	0	NA	intron (NR_135738, intron 4 of 6)	intron (NR_135738, intron 4 of 6)	-26070	NR_136637	644794		NR_136637		LINC02604	lncHERG	long intergenic non-protein coding RNA 2604	ncRNA
125976	chr2	25275141	25275890	+	0	NA	exon (NM_175629, exon 5 of 23)	exon (NM_175629, exon 5 of 23)	-23200	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
192580	chr6	25942571	25942800	+	0	NA	Intergenic	Intergenic	-11994	NM_005835	10246		NM_005835	ENSG00000112337	SLC17A2	NPT3	solute carrier family 17 member 2	protein-coding
137766	chr2	198325501	198325700	+	0	NA	intron (NR_110267, intron 2 of 2)	intron (NR_110267, intron 2 of 2)	49497	NR_110267	101927619		NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
175746	chr4	77737021	77737780	+	0	NA	intron (NM_144571, intron 8 of 11)	MIRc|SINE|MIR	81664	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
126041	chr2	25373521	25373780	+	0	NA	Intergenic	Intergenic	-31060	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
118815	chr19	38538601	38539730	+	0	NA	intron (NM_000540, intron 84 of 105)	LTR106_Mam|LTR|LTR	-57182	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
158895	chr3	9930071	9930430	+	0	NA	intron (NM_153460, intron 14 of 18)	intron (NM_153460, intron 14 of 18)	-3584	NM_001374319	78987		NM_015513	ENSG00000163703	CRELD1	AVSD2|CIRRIN|JELANS	cysteine rich with EGF like domains 1	protein-coding
109191	chr19	383971	384330	+	0	NA	Intergenic	MIRc|SINE|MIR	-8124	NM_016585	51298		NM_016585	ENSG00000105549	SPMAP2	CT56|THEG|THEG1	sperm microtubule associated protein 2	protein-coding
134719	chr2	144516701	144518780	+	0	NA	intron (NM_014795, intron 1 of 9)	CpG-16650	-1874	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
62031	chr13	87836151	87836250	+	0	NA	Intergenic	AluYa5|SINE|Alu	-25680	NR_104059	101930749		NR_104059	ENSG00000223404	LINC00397	-	long intergenic non-protein coding RNA 397	ncRNA
26678	chr10	22622321	22622780	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	91558	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
101652	chr17	68261121	68261380	+	0	NA	intron (NM_014960, intron 1 of 11)	L2a|LINE|L2	2068	NM_001352904	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
204717	chr7	5546671	5547150	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-16309	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
108203	chr18	63133271	63133430	+	0	NA	intron (NM_000633, intron 2 of 2)	AluSx1|SINE|Alu	186419	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
29656	chr10	71897751	71898050	+	0	NA	Intergenic	AluJb|SINE|Alu	-46649	NM_001042466	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
197919	chr6	89438351	89438450	+	0	NA	intron (NM_014942, intron 1 of 15)	MLT1J2|LTR|ERVL-MaLR	5222	NM_014942	22881		NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
182433	chr5	62260501	62261030	+	0	NA	Intergenic	Intergenic	-45397	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
135522	chr2	162073371	162073530	+	0	NA	exon (NM_001379606, exon 2 of 25)	exon (NM_001379606, exon 2 of 25)	765	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
9325	chr1	46551751	46551850	+	0	NA	promoter-TSS (NM_001322255)	promoter-TSS (NM_001322255)	-153	NM_001322255	148930		NM_182516	ENSG00000162456	KNCN	Kino|L5	kinocilin	protein-coding
123165	chr19	52222001	52222200	+	0	NA	promoter-TSS (NR_106859)	promoter-TSS (NR_106859)	80	NR_106859	102466984		NR_106859	ENSG00000274380	MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
105288	chr17	82489151	82489450	+	0	NA	3' UTR (NM_001083608, exon 10 of 10)	3' UTR (NM_001083608, exon 10 of 10)	-30432	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
231204	chr9	129944021	129945000	+	0	NA	intron (NM_001363755, intron 6 of 15)	AluSc|SINE|Alu	74905	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
5573	chr1	25956371	25956730	+	0	NA	Intergenic	Intergenic	41513	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
194966	chr6	35312851	35313200	+	0	NA	intron (NM_022047, intron 5 of 10)	LTR103b_Mam|LTR|ERV1?	15207	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
167332	chr3	128744451	128745150	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	18617	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
56237	chr12	111845351	111845650	+	0	NA	intron (NM_001371479, intron 1 of 15)	MIR|SINE|MIR	-2495	NR_015404	51275		NR_015404	ENSG00000234608	MAPKAPK5-AS1	C12orf47|MAAS	MAPKAPK5 antisense RNA 1	ncRNA
71	chr1	284701	284900	+	0	NA	Intergenic	L2a|LINE|L2	-78203	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
111885	chr19	4661851	4662550	+	0	NA	intron (NM_019107, intron 3 of 5)	intron (NM_019107, intron 3 of 5)	8142	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
101902	chr17	74430451	74431130	+	0	NA	Intergenic	CpG	-1298	NM_001366262	55890		NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding
130442	chr2	85418151	85419450	+	0	NA	promoter-TSS (NM_201594)	promoter-TSS (NM_201594)	-131	NM_201594								
80059	chr16	1976301	1976950	+	0	NA	intron (NM_006453, intron 13 of 21)	intron (NM_006453, intron 13 of 21)	4572	NM_006453	10607		NM_006453	ENSG00000183751	TBL3	SAZD|UTP13	transducin beta like 3	protein-coding
82691	chr16	20676971	20677130	+	0	NA	intron (NR_134918, intron 3 of 10)	HERV15-int|LTR|ERV1	14206	NR_134918	116285		NM_052956	ENSG00000166743	ACSM1	BUCS1|MACS1	acyl-CoA synthetase medium chain family member 1	protein-coding
117235	chr19	19426671	19426830	+	0	NA	intron (NM_001384527, intron 1 of 11)	AluSz6|SINE|Alu	-8313	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
215508	chr7	158695871	158696630	+	0	NA	intron (NM_001281932, intron 3 of 28)	MLT1H1|LTR|ERVL-MaLR	8554	NM_001281932	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
71374	chr14	105500001	105500480	+	0	NA	TTS (NM_001134875)	TTS (NM_001134875)	8991	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
45793	chr11	119319751	119320230	+	0	NA	Intergenic	Intergenic	-2860	NM_006500	4162		NM_006500	ENSG00000076706	MCAM	CD146|HEMCAM|METCAM|MUC18|MelCAM	melanoma cell adhesion molecule	protein-coding
140191	chr2	231674371	231675600	+	0	NA	Intergenic	Intergenic	-33540	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
218583	chr8	55819051	55819150	+	0	NA	intron (NM_024831, intron 12 of 12)	AluJb|SINE|Alu	45654	NM_024831	96764		NM_024831	ENSG00000137574	TGS1	NCOA6IP|PIMT|PIPMT	trimethylguanosine synthase 1	protein-coding
93023	chr17	17245271	17245430	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8182	NM_144606	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
204560	chr7	5174521	5175030	+	0	NA	Intergenic	AluSc5|SINE|Alu	-15458	NM_015610	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
114061	chr19	11084851	11085630	+	0	NA	Intergenic	AluJo|SINE|Alu	-4223	NM_001195799	3949		NM_000527	ENSG00000130164	LDLR	FH|FHC|FHCL1|LDLCQ2	low density lipoprotein receptor	protein-coding
222278	chr8	133302271	133302430	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-5098	NM_001258433	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
67106	chr14	68364471	68364630	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	264237	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
99652	chr17	50703621	50704430	+	0	NA	intron (NM_052855, intron 1 of 4)	L2a|LINE|L2	3889	NM_052855	91369		NM_052855	ENSG00000154945	ANKRD40	-	ankyrin repeat domain 40	protein-coding
238752	chrX	154339371	154339900	+	0	NA	Intergenic	AluSp|SINE|Alu	34465	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
12246	chr1	100435371	100436500	+	0	NA	intron (NM_001319210, intron 5 of 16)	L2c|LINE|L2	83429	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
199829	chr6	127741621	127742200	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	113278	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
98600	chr17	47746001	47746550	+	0	NA	TTS (NM_013351)	TTS (NM_013351)	13039	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
211513	chr7	105300251	105301400	+	0	NA	intron (NM_001350742, intron 2 of 16)	L1PA6|LINE|L1	-2046	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
160054	chr3	18489921	18490280	+	0	NA	intron (NR_125803, intron 4 of 6)	intron (NR_125803, intron 4 of 6)	-44508	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
171424	chr3	196236851	196237550	+	0	NA	3' UTR (NM_001312673, exon 9 of 9)	3' UTR (NM_001312673, exon 9 of 9)	20666	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
189205	chr5	171432551	171433250	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	13253	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
204689	chr7	5507151	5507450	+	0	NA	intron (NM_024963, intron 1 of 4)	intron (NM_024963, intron 1 of 4)	6509	NM_001363441	80028		NM_024963	ENSG00000155034	FBXL18	Fbl18	F-box and leucine rich repeat protein 18	protein-coding
47916	chr12	6770201	6770600	+	0	NA	exon (NM_002824, exon 5 of 5)	exon (NM_002824, exon 5 of 5)	-2120	NM_002286	3902		NM_002286	ENSG00000089692	LAG3	CD223	lymphocyte activating 3	protein-coding
150190	chr21	39312001	39312900	+	0	NA	intron (NM_033656, intron 4 of 40)	CpG	1182	NM_033656	54014		NM_018963	ENSG00000185658	BRWD1	C21orf107|CILD51|DCAF19|N143|WDR9|WRD9	bromodomain and WD repeat domain containing 1	protein-coding
110110	chr19	1558771	1559130	+	0	NA	intron (NM_203304, intron 1 of 1)	intron (NM_203304, intron 1 of 1)	9108	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
134687	chr2	144481711	144482430	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-37544	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
30688	chr10	80521251	80521950	+	0	NA	3' UTR (NM_001351267, exon 11 of 11)	3' UTR (NM_001351267, exon 11 of 11)	14342	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
26367	chr10	16436301	16438230	+	0	NA	intron (NM_001261838, intron 1 of 3)	CpG	322	NM_001001484	9317		NM_030664	ENSG00000165983	PTER	HPHRP|RPR-1	phosphotriesterase related	protein-coding
16530	chr1	154945201	154945400	+	0	NA	intron (NM_001317734, intron 9 of 9)	intron (NM_001317734, intron 9 of 9)	-2642	NM_001323012	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
210616	chr7	100440371	100441050	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4213	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
4835	chr1	23633071	23633430	+	0	NA	intron (NR_167910, intron 4 of 5)	L2b|LINE|L2	5916	NR_167904	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
201009	chr6	141153271	141153880	+	0	NA	Intergenic	MER21C|LTR|ERVL	469761	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
209941	chr7	92604101	92604500	+	0	NA	TTS (NM_001259)	TTS (NM_001259)	-13910	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
84959	chr16	31399901	31400530	+	0	NA	intron (NM_001318185, intron 5 of 29)	intron (NM_001318185, intron 5 of 29)	6880	NM_001318185	3681		NM_005353	ENSG00000156886	ITGAD	ADB2|CD11D	integrin subunit alpha D	protein-coding
131007	chr2	87822851	87823150	+	0	NA	intron (NM_001024457, intron 1 of 22).2	HAL1|LINE|L1	2767	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
17327	chr1	156472201	156473100	+	0	NA	intron (NM_001271629, intron 8 of 10)	AluSc8|SINE|Alu	18037	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
205318	chr7	12257401	12258300	+	0	NA	Intergenic	L2|LINE|L2	46556	NM_001134232	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
46159	chr11	123067121	123067430	+	0	NA	Intergenic	AluSp|SINE|Alu	-5139	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
236608	chrX	74325171	74325530	+	0	NA	Intergenic	Intergenic	21170	NM_203303	389874		NM_203303	ENSG00000187969	ZCCHC13	CNBP2|ZNF9L	zinc finger CCHC-type containing 13	protein-coding
50382	chr12	47229301	47230150	+	0	NA	intron (NM_138371, intron 3 of 3)	Tigger4|DNA|TcMar-Tigger	-13282	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
54130	chr12	76519571	76520000	+	0	NA	intron (NM_001003712, intron 1 of 22)	MSTB|LTR|ERVL-MaLR	39986	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
106890	chr18	24475821	24476280	+	0	NA	intron (NM_021624, intron 2 of 2)	intron (NM_021624, intron 2 of 2)	15413	NM_021624	59340		NM_021624	ENSG00000134489	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
4537	chr1	21955751	21956280	+	0	NA	Intergenic	MIRb|SINE|MIR	-18705	NM_001291860	3339		NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
88946	chr16	87839921	87840930	+	0	NA	intron (NM_003486, intron 4 of 9)	intron (NM_003486, intron 4 of 9)	-5765	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
13309	chr1	113413571	113413730	+	0	NA	intron (NM_152900, intron 1 of 20)	L1PA6|LINE|L1	23135	NM_152900	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
58694	chr12	132554721	132555580	+	0	NA	intron (NM_001382740, intron 5 of 11)	MIRb|SINE|MIR	-26847	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
207495	chr7	44747971	44749850	+	0	NA	promoter-TSS (NM_031449)	promoter-TSS (NM_031449)	63	NM_031449	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
35018	chr11	552001	552730	+	0	NA	intron (NM_198075, intron 12 of 13)	intron (NM_198075, intron 12 of 13)	-6897	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
201303	chr6	144349601	144350490	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	-55610	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
14657	chr1	145716621	145717780	+	0	NA	Intergenic	Intergenic	-2299	NR_103845	11126		NM_007053	ENSG00000117281	CD160	BY55|NK1|NK28	CD160 molecule	protein-coding
213262	chr7	134632921	134633300	+	0	NA	Intergenic	Intergenic	-13669	NM_001293085	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
22510	chr1	221783201	221784480	+	0	NA	Intergenic	Intergenic	-41664	NR_111940	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
139695	chr2	227464221	227465280	+	0	NA	Intergenic	Intergenic	-7382	NR_049888	100847081		NR_049888	ENSG00000284092	MIR5703	mir-5703	microRNA 5703	ncRNA
23685	chr1	231420001	231420400	+	0	NA	intron (NM_001377261, intron 1 of 3)	intron (NM_001377261, intron 1 of 3)	2087	NM_001377261	54583		NM_022051	ENSG00000135766	EGLN1	C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia inducible factor 1	protein-coding
138304	chr2	203732501	203733280	+	0	NA	intron (NM_001243078, intron 2 of 2)	intron (NM_001243078, intron 2 of 2)	26251	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123504	chr19	54207801	54208830	+	0	NA	TTS (NR_135762).2	TTS (NR_135762).2	7457	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
203050	chr6	166097951	166098130	+	0	NA	non-coding (NR_147704, exon 1 of 2)	non-coding (NR_147704, exon 1 of 2)	320	NR_147704	729681		NR_147704		LOC729681	-	uncharacterized LOC729681	ncRNA
236958	chrX	101220001	101220400	+	0	NA	intron (NM_001171184, intron 1 of 21)	intron (NM_001171184, intron 1 of 21)	256	NM_001939	1821		NM_001939	ENSG00000102385	DRP2	DRP-2	dystrophin related protein 2	protein-coding
210134	chr7	98214221	98214880	+	0	NA	TTS (NM_015395)	TTS (NM_015395)	3111	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
113551	chr19	10234051	10234350	+	0	NA	Intergenic	L1ME4b|LINE|L1	-2869	NM_004230	9294		NM_004230	ENSG00000267534	S1PR2	AGR16|DFNB68|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding
138031	chr2	201286101	201286530	+	0	NA	intron (NM_001228, intron 9 of 9)	intron (NM_001228, intron 9 of 9)	25779	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
50518	chr12	47828921	47829450	+	0	NA	Intergenic	Intergenic	-9282	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
165871	chr3	106068671	106069230	+	0	NA	Intergenic	Intergenic	-199549	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
97667	chr17	44214351	44214730	+	0	NA	intron (NM_001076683, intron 5 of 19)	intron (NM_001076683, intron 5 of 19)	5135	NM_001076684	7343		NM_014233	ENSG00000108312	UBTF	CONDBA|NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor	protein-coding
72082	chr15	28908951	28909050	+	0	NA	intron (NM_001379685, intron 2 of 15)	AluYm1|SINE|Alu	-12637	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
83636	chr16	28293121	28294330	+	0	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	1200	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
38863	chr11	47340371	47340730	+	0	NA	intron (NM_000256, intron 19 of 33)	AluY|SINE|Alu	12152	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
97378	chr17	43323851	43324100	+	0	NA	Intergenic	LTR13|LTR|ERVK	-23744	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
153457	chr22	25334071	25334260	+	0	NA	Intergenic	Intergenic	15908	NR_029395	91353		NM_001013618		IGLL3P	16.1|IGLL3	immunoglobulin lambda like polypeptide 3, pseudogene	pseudo
137798	chr2	199915351	199915650	+	0	NA	intron (NM_153689, intron 1 of 1)	intron (NM_153689, intron 1 of 1)	4207	NM_153689	205327		NM_153689	ENSG00000178074	C2orf69	COXPD53	chromosome 2 open reading frame 69	protein-coding
65690	chr14	52731951	52732480	+	0	NA	intron (NM_001130701, intron 2 of 11)	AluSp|SINE|Alu	2049	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
19489	chr1	175028071	175028230	+	0	NA	Intergenic	AluJb|SINE|Alu	-4695	NR_037606	63931		NM_022100	ENSG00000120333	MRPS14	COXPD38|DJ262D12.2|HSMRPS14|MRP-S14|S14mt|uS14m	mitochondrial ribosomal protein S14	protein-coding
116622	chr19	18289801	18290970	+	0	NA	Intergenic	Intergenic	8308	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
194998	chr6	35395871	35396030	+	0	NA	intron (NM_001171819, intron 2 of 6)	MIR|SINE|MIR	53392	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
170907	chr3	194084301	194084630	+	0	NA	Intergenic	Intergenic	-13495	NR_136180	285389		NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
190350	chr5	179685001	179685200	+	0	NA	Intergenic	AluSx|SINE|Alu	-4066	NM_001164444	646019		NM_001164444	ENSG00000204659	CBY3	-	chibby family member 3	protein-coding
70523	chr14	102322801	102323330	+	0	NA	intron (NR_169567, intron 3 of 9)	intron (NR_169567, intron 3 of 9)	3319	NR_169567	55778		NM_018335	ENSG00000022976	ZNF839	C14orf131	zinc finger protein 839	protein-coding
122937	chr19	50705471	50705850	+	0	NA	intron (NM_016148, intron 8 of 23)	MER20|DNA|hAT-Charlie	14142	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
91110	chr17	3671271	3671630	+	0	NA	non-coding (NR_037928, exon 12 of 15)	non-coding (NR_037928, exon 12 of 15)	2638	NM_031298	83460		NM_031298	ENSG00000127774	EMC6	RAB5IFL|TMEM93	ER membrane protein complex subunit 6	protein-coding
148439	chr20	63975021	63975280	+	0	NA	3' UTR (NM_080621, exon 5 of 5)	3' UTR (NM_080621, exon 5 of 5)	4492	NM_080621	140700		NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
65665	chr14	52527701	52527950	+	0	NA	intron (NM_020784, intron 6 of 20)	LTR40A1|LTR|ERVL	24680	NM_020784	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
63096	chr13	113231721	113232180	+	0	NA	intron (NM_003589, intron 5 of 19)	intron (NM_003589, intron 5 of 19)	22337	NM_001008895	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
170657	chr3	187170251	187170350	+	0	NA	Intergenic	L1MC5a|LINE|L1	-27186	NM_153708	132112		NM_153708	ENSG00000175077	RTP1	Z3CXXC1	receptor transporter protein 1	protein-coding
227132	chr9	86261601	86261800	+	0	NA	Intergenic	Intergenic	-2043	NM_001276367	389766		NM_001010907	ENSG00000187753	C9orf153	bA507D14.1	chromosome 9 open reading frame 153	protein-coding
183626	chr5	80228101	80228530	+	0	NA	intron (NM_001174072, intron 1 of 11)	(GAGG)n|Simple_repeat|Simple_repeat	27733	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
85030	chr16	31706451	31707150	+	0	NA	intron (NR_024034, intron 8 of 8)	intron (NR_024034, intron 8 of 8)	6187	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
95459	chr17	36182021	36182300	+	0	NA	Intergenic	Intergenic	-5536	NM_001001417	414059		NM_001001417	ENSG00000274808	TBC1D3B	PRC17|TBC1D3I|TBC1D3L	TBC1 domain family member 3B	protein-coding
91451	chr17	4797301	4797500	+	0	NA	intron (NM_001270481, intron 2 of 5)	intron (NM_001270481, intron 2 of 5)	1236	NM_002798	5694		NM_002798	ENSG00000142507	PSMB6	DELTA|LMPY	proteasome 20S subunit beta 6	protein-coding
145260	chr20	39089021	39089330	+	0	NA	Intergenic	Intergenic	126831	NR_033905	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
5480	chr1	25670551	25671250	+	0	NA	intron (NM_020379, intron 1 of 11)	AluJb|SINE|Alu	-25255	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
105794	chr18	2906121	2908000	+	0	NA	exon (NM_032048, exon 5 of 8)	exon (NM_032048, exon 5 of 8)	39563	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
67288	chr14	69396151	69396250	+	0	NA	intron (NM_004450, intron 1 of 3)	intron (NM_004450, intron 1 of 3)	2099	NM_004450	2079		NM_004450	ENSG00000100632	ERH	DROER	ERH mRNA splicing and mitosis factor	protein-coding
132598	chr2	108450821	108451330	+	0	NA	exon (NM_181453, exon 3 of 23)	exon (NM_181453, exon 3 of 23)	1869	NR_028063								
49666	chr12	29317671	29318070	+	0	NA	promoter-TSS (NR_103860)	promoter-TSS (NR_103860)	-22	NR_103860	100506606		NR_103860	ENSG00000257176	LOC100506606	-	uncharacterized LOC100506606	ncRNA
81797	chr16	11539001	11539200	+	0	NA	Intergenic	Intergenic	-11853	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
99725	chr17	50908371	50908530	+	0	NA	Intergenic	L2b|LINE|L2	-40472	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
93393	chr17	18318301	18318500	+	0	NA	intron (NM_144775, intron 1 of 1)	AluSq10|SINE|Alu	3107	NM_144775	140775		NM_144775	ENSG00000176994	SMCR8	DENND8A	SMCR8-C9orf72 complex subunit	protein-coding
157433	chr22	45179371	45180130	+	0	NA	intron (NM_153645, intron 6 of 8)	AluJr|SINE|Alu	11862	NR_146602	105373064		NR_146602		LOC105373064	-	uncharacterized LOC105373064	ncRNA
67939	chr14	74769071	74769580	+	0	NA	intron (NM_019589, intron 1 of 20)	AluSq2|SINE|Alu	6009	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
124458	chr19	58517651	58517750	+	0	NA	intron (NM_001316980, intron 1 of 2)	intron (NM_001316980, intron 1 of 2)	1902	NM_001316978	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
185304	chr5	126730321	126730830	+	0	NA	Intergenic	AluSx|SINE|Alu	45911	NR_134485	102723557		NR_134485	ENSG00000251072	LMNB1-DT	-	LMNB1 divergent transcript	ncRNA
5823	chr1	26690971	26691130	+	0	NA	TTS (NR_135804)	TTS (NR_135804)	3081	NR_135804	101928728		NR_135804	ENSG00000260063	LOC101928728	-	uncharacterized LOC101928728	ncRNA
14912	chr1	147225021	147226080	+	0	NA	promoter-TSS (NM_001461)	promoter-TSS (NM_001461)	88	NM_001144829	2330		NM_001461	ENSG00000131781	FMO5	hBVMO1	flavin containing dimethylaniline monoxygenase 5	protein-coding
228470	chr9	99857951	99858250	+	0	NA	intron (NM_173200, intron 8 of 8)	L2c|LINE|L2	36215	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
155261	chr22	37997751	37998550	+	0	NA	intron (NM_001301130, intron 5 of 5)	intron (NM_001301130, intron 5 of 5)	9356	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
18005	chr1	160545721	160545980	+	0	NA	3' UTR (NM_001184879, exon 8 of 8)	3' UTR (NM_001184879, exon 8 of 8)	-22595	NM_001184714	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
230185	chr9	127794851	127794950	+	0	NA	Intergenic	Intergenic	-7958	NM_001288803	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
185031	chr5	115603821	115604550	+	0	NA	intron (NR_109875, intron 2 of 2)	L2c|LINE|L2	-1706	NM_021649	353376		NM_021649	ENSG00000243414	TICAM2	MyD88-4|TICAM-2|TIRAP3|TIRP|TRAM	TIR domain containing adaptor molecule 2	protein-coding
59942	chr13	31160571	31161300	+	0	NA	intron (NM_001286504, intron 1 of 17)	intron (NM_001286504, intron 1 of 17)	969	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
31334	chr10	92914271	92914710	+	0	NA	intron (NM_001319200, intron 6 of 17)	intron (NM_001319200, intron 6 of 17)	65970	NM_001319195	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
33563	chr10	119360101	119361080	+	0	NA	intron (NM_005308, intron 2 of 15)	intron (NM_005308, intron 2 of 15)	-17382	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
238880	chrX	154545001	154545200	+	0	NA	intron (NM_001099856, intron 1 of 9)	intron (NM_001099856, intron 1 of 9)	1746	NM_001360016	2539		NM_000402	ENSG00000160211	G6PD	G6PD1	glucose-6-phosphate dehydrogenase	protein-coding
61875	chr13	77199271	77199430	+	0	NA	intron (NM_015057, intron 26 of 82)	L1PA3|LINE|L1	123836	NR_046716	100874212		NR_046716	ENSG00000236051	MYCBP2-AS1	-	MYCBP2 antisense RNA 1	ncRNA
237314	chrX	118345621	118347530	+	0	NA	exon (NM_001184965, exon 1 of 20)	exon (NM_001184965, exon 1 of 20)	469	NM_001184965	54521		NM_019045	ENSG00000131725	WDR44	RAB11BP|RPH11|SYM-4	WD repeat domain 44	protein-coding
146886	chr20	51513601	51513900	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	28969	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
203444	chr7	365921	366680	+	0	NA	Intergenic	L1MA5|LINE|L1	-13125	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
105693	chr18	2670721	2671380	+	0	NA	intron (NM_015295, intron 3 of 47)	AluSp|SINE|Alu	15324	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
73240	chr15	41694171	41694330	+	0	NA	intron (NM_001164273, intron 2 of 23)	AluSg|SINE|Alu	2665	NR_030356	693211		NR_030356	ENSG00000207766	MIR626	MIRN626|hsa-mir-626	microRNA 626	ncRNA
13107	chr1	111625201	111625700	+	0	NA	intron (NM_001291896, intron 1 of 7)	intron (NM_001291896, intron 1 of 7)	-5052	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
110363	chr19	1901271	1901930	+	0	NA	Intergenic	AluY|SINE|Alu	-3799	NM_138422	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
192856	chr6	27188071	27189140	+	0	NA	Intergenic	HERVKC4-int|LTR|ERVK	40979	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
107383	chr18	46069571	46069730	+	0	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	2610	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
165377	chr3	93978701	93978900	+	0	NA	Intergenic	Intergenic	-1339	NM_001174151	200894		NM_144996	ENSG00000169379	ARL13B	ARL2L1|JBTS8	ADP ribosylation factor like GTPase 13B	protein-coding
147118	chr20	53948801	53950200	+	0	NA	intron (NM_001366296, intron 10 of 10)	intron (NM_001366296, intron 10 of 10)	-73791	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
41585	chr11	66343371	66343750	+	0	NA	intron (NM_015399, intron 1 of 9)	L2b|LINE|L2	1544	NM_015399	25855		NM_015399	ENSG00000174744	BRMS1	-	BRMS1 transcriptional repressor and anoikis regulator	protein-coding
10012	chr1	55210821	55211630	+	0	NA	intron (NM_015306, intron 1 of 67)	L3b|LINE|CR1	4139	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
231810	chr9	132410771	132411450	+	0	NA	intron (NM_001282957, intron 1 of 5)	intron (NM_001282957, intron 1 of 5)	899	NM_207417	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
144924	chr20	36977751	36978050	+	0	NA	Intergenic	AluJb|SINE|Alu	-26192	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
46357	chr11	125942071	125942230	+	0	NA	Intergenic	Intergenic	-3906	NM_001365077	338667		NM_001365077	ENSG00000283703	VSIG10L2	-	V-set and immunoglobulin domain containing 10 like 2	protein-coding
2836	chr1	11063921	11064180	+	0	NA	Intergenic	Intergenic	-4032	NM_003132	6723		NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
17129	chr1	156174201	156174580	+	0	NA	intron (NM_001370567, intron 10 of 13)	L2a|LINE|L2	-19714	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
87174	chr16	69338971	69340650	+	0	NA	promoter-TSS (NM_016101)	promoter-TSS (NM_016101)	38	NM_016101	51388		NM_016101	ENSG00000132603	NIP7	CGI-37|HSPC031|KD93	nucleolar pre-rRNA processing protein NIP7	protein-coding
175779	chr4	77792121	77792380	+	0	NA	intron (NM_001365006, intron 1 of 11)	intron (NM_001365006, intron 1 of 11)	26814	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
112065	chr19	5155921	5156180	+	0	NA	Intergenic	Intergenic	184762	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
48293	chr12	8955771	8955930	+	0	NA	intron (NR_137427, intron 1 of 2)	LTR2752|LTR|ERV1	5806	NM_001329103	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
158722	chr3	8500871	8501900	+	0	NA	promoter-TSS (NM_001278235)	promoter-TSS (NM_001278235)	273	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
214103	chr7	143834901	143837600	+	0	NA	intron (NR_015421, intron 1 of 2)	intron (NR_015421, intron 1 of 2)	436	NM_001363538	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
144042	chr20	33624551	33625280	+	0	NA	exon (NM_001039709, exon 6 of 11)	exon (NM_001039709, exon 6 of 11)	-37412	NM_080825	128864		NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
31653	chr10	97405971	97406330	+	0	NA	Intergenic	Intergenic	-4780	NM_001145114	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
15682	chr1	150969051	150969350	+	0	NA	intron (NM_181746, intron 1 of 10)	MIRb|SINE|MIR	5635	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
194612	chr6	33548101	33548930	+	0	NA	Intergenic	Intergenic	31761	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
160440	chr3	28343501	28343700	+	0	NA	intron (NM_001271650, intron 1 of 8)	MIRb|SINE|MIR	-5121	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
156928	chr22	42298851	42299150	+	0	NA	Intergenic	Intergenic	-15073	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
76591	chr15	75354301	75354750	+	0	NA	promoter-TSS (NR_030360)	promoter-TSS (NR_030360)	-840	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
54883	chr12	95805701	95806350	+	0	NA	intron (NR_135016, intron 1 of 1)	intron (NR_135016, intron 1 of 1)	2928	NR_135016	105369920		NR_135016	ENSG00000258292	LINC02410	-	long intergenic non-protein coding RNA 2410	ncRNA
26169	chr10	14498701	14500050	+	0	NA	Intergenic	Intergenic	33339	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
188522	chr5	155766951	155767930	+	0	NA	Intergenic	Intergenic	-559724	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
137330	chr2	196113201	196113480	+	0	NA	Intergenic	Intergenic	-44503	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
217661	chr8	30088421	30089050	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-5527	NM_001284239	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
173207	chr4	6854201	6854400	+	0	NA	intron (NM_014743, intron 4 of 9)	MIRb|SINE|MIR	-55144	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
200681	chr6	137229871	137230230	+	0	NA	Intergenic	Intergenic	-10665	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
165520	chr3	100398821	100399150	+	0	NA	intron (NM_014820, intron 1 of 11)	intron (NM_014820, intron 1 of 11)	2104	NM_014820	9868		NM_014820	ENSG00000154174	TOMM70	TOMM70A|Tom70	translocase of outer mitochondrial membrane 70	protein-coding
144199	chr20	34304401	34304600	+	0	NA	intron (NM_001161766, intron 1 of 9)	intron (NM_001161766, intron 1 of 9)	-1145	NM_000687	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
21975	chr1	209569501	209570000	+	0	NA	Intergenic	Intergenic	-13964	NM_020439	57172		NM_020439	ENSG00000008118	CAMK1G	CLICK3|CLICKIII|VWS1	calcium/calmodulin dependent protein kinase IG	protein-coding
52593	chr12	56192651	56193500	+	0	NA	Intergenic	Intergenic	-3592	NM_139067	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
198002	chr6	90083901	90084780	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	189871	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
131834	chr2	98660321	98660630	+	0	NA	intron (NM_001160154, intron 2 of 12)	L1M2|LINE|L1	2998	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
107089	chr18	35039671	35040030	+	0	NA	intron (NM_001143826, intron 2 of 7)	intron (NM_001143826, intron 2 of 7)	-1563	NR_046177	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
237087	chrX	103897051	103897150	+	0	NA	intron (NR_146557, intron 4 of 4)	L1PA2|LINE|L1	-21796	NM_001350211	286527		NM_194324	ENSG00000158427	TMSB15B	TMSB15A|TMSL8|TMSNB|Tbeta15b	thymosin beta 15B	protein-coding
227964	chr9	94951401	94951850	+	0	NA	intron (NM_001193329, intron 6 of 15)	MLT1L|LTR|ERVL-MaLR	-6071	NR_147614	101928119		NR_147613		LOC101928119	-	uncharacterized LOC101928119	ncRNA
146507	chr20	49906871	49907030	+	0	NA	intron (NM_001135773, intron 2 of 2)	intron (NM_001135773, intron 2 of 2)	6789	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
63326	chr13	114010551	114011550	+	0	NA	intron (NM_001320822, intron 16 of 23).2	intron (NM_001320822, intron 16 of 23).2	-36974	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
225177	chr9	33896971	33897130	+	0	NA	intron (NM_017811, intron 2 of 4)	AluY|SINE|Alu	37314	NM_001282530	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
208833	chr7	73690721	73691430	+	0	NA	intron (NM_001202560, intron 6 of 12)	intron (NM_001202560, intron 6 of 12)	7478	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
110069	chr19	1496151	1496450	+	0	NA	exon (NM_001329556, exon 4 of 6)	exon (NM_001329556, exon 4 of 6)	5119	NM_138393	92840		NM_138393	ENSG00000115255	REEP6	C19orf32|DP1L1|REEP6.1|REEP6.2|RP77|TB1|TB2L1|Yip2f	receptor accessory protein 6	protein-coding
90430	chr17	1354001	1354200	+	0	NA	intron (NR_024058, intron 6 of 6)	intron (NR_024058, intron 6 of 6)	46122	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
9377	chr1	47289121	47289680	+	0	NA	intron (NM_003035, intron 9 of 16)	intron (NM_003035, intron 9 of 16)	24747	NM_001282936	6491		NM_003035	ENSG00000123473	STIL	MCPH7|SIL	STIL centriolar assembly protein	protein-coding
27839	chr10	38418471	38418630	+	0	NA	Intergenic	Intergenic	-9596	NR_024497	399744		NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
17097	chr1	156145351	156145450	+	0	NA	Intergenic	AluSz|SINE|Alu	-4544	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
54721	chr12	93568651	93568750	+	0	NA	intron (NR_038263, intron 1 of 3)	AluSz|SINE|Alu	-1269	NM_003877	8835		NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
170878	chr3	192915871	192916030	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	1906	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
99917	chr17	56959701	56959900	+	0	NA	intron (NM_004645, intron 1 of 6)	intron (NM_004645, intron 1 of 6)	1250	NM_004645	8161		NM_004645	ENSG00000121058	COIL	CLN80|p80-coilin	coilin	protein-coding
137284	chr2	195532151	195533230	+	0	NA	Intergenic	Intergenic	-124268	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
132566	chr2	106485251	106485550	+	0	NA	Intergenic	L1MB5|LINE|L1	-1964	NM_001368307	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
76262	chr15	74064901	74065100	+	0	NA	Intergenic	Intergenic	17550	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
101535	chr17	67867601	67868000	+	0	NA	intron (NM_182641, intron 3 of 27)	L1MC3|LINE|L1	42297	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
9949	chr1	54714071	54714230	+	0	NA	intron (NR_037641, intron 22 of 32)	intron (NR_037641, intron 22 of 32)	-1672	NM_001291333	7268		NM_004623	ENSG00000243725	TTC4	CNS1	tetratricopeptide repeat domain 4	protein-coding
77799	chr15	88244121	88244580	+	0	NA	intron (NM_001012338, intron 3 of 19)	MIRb|SINE|MIR	-8380	NR_038229	283738		NR_038229	ENSG00000260305	NTRK3-AS1	-	NTRK3 antisense RNA 1	ncRNA
130711	chr2	86728401	86729350	+	0	NA	intron (NM_022780, intron 1 of 8)	AluSc8|SINE|Alu	-7753	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
116400	chr19	17966301	17966500	+	0	NA	intron (NM_002248, intron 2 of 10)	intron (NM_002248, intron 2 of 10)	15098	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
40484	chr11	64246201	64248000	+	0	NA	promoter-TSS (NR_135086)	promoter-TSS (NR_135086)	46	NR_135086	105369340		NR_135086	ENSG00000256940	PPP1R14B-AS1	-	PPP1R14B antisense RNA 1	ncRNA
233427	chr9	137604721	137607030	+	0	NA	intron (NM_001317968, intron 1 of 6)	CpG	189	NM_152285	92714		NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
207982	chr7	55432871	55433450	+	0	NA	3' UTR (NM_018697, exon 9 of 9)	3' UTR (NM_018697, exon 9 of 9)	67823	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
103429	chr17	78255551	78255650	+	0	NA	Intergenic	MIRb|SINE|MIR	7284	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
98479	chr17	47203851	47204400	+	0	NA	Intergenic	L1MEh|LINE|L1	-4937	NM_001002841	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
210962	chr7	101538701	101539550	+	0	NA	intron (NM_133457, intron 4 of 12)	intron (NM_133457, intron 4 of 12)	29881	NR_103749	100506527		NR_103747	ENSG00000233123	LINC01007	-	long intergenic non-protein coding RNA 1007	ncRNA
159186	chr3	12837801	12838480	+	0	NA	intron (NM_001007073, intron 3 of 3)	AluSz|SINE|Alu	2310	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
164778	chr3	69193401	69193600	+	0	NA	intron (NM_015123, intron 17 of 22)	AluSq2|SINE|Alu	-70905	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
217805	chr8	33574371	33575450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7782	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
232189	chr9	134243671	134244030	+	0	NA	Intergenic	L1MEg|LINE|L1	51547	NR_146518	105376310		NR_146518	ENSG00000223729	LINC02247	-	long intergenic non-protein coding RNA 2247	ncRNA
4253	chr1	19607771	19608230	+	0	NA	non-coding (NR_077246, exon 1 of 1)	non-coding (NR_077246, exon 1 of 1)	193	NR_077246	644068		NR_077246		RPS14P3	RPS14_1_16	ribosomal protein S14 pseudogene 3	pseudo
102187	chr17	75153611	75155600	+	0	NA	promoter-TSS (NM_001002033)	promoter-TSS (NM_001002033)	-93	NM_001002033	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
207213	chr7	43650611	43650900	+	0	NA	intron (NM_001321205, intron 1 of 3)	intron (NM_001321205, intron 1 of 3)	67647	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
120989	chr19	45762101	45762300	+	0	NA	intron (NM_001310124, intron 13 of 14)	intron (NM_001310124, intron 13 of 14)	-5596	NR_147193	109729182		NR_147193	ENSG00000267395	DM1-AS	-	DM1 locus antisense RNA	ncRNA
210898	chr7	101177451	101178580	+	0	NA	intron (NM_198571, intron 1 of 3)	intron (NM_198571, intron 1 of 3)	1221	NM_001369695	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
200064	chr6	130033101	130033500	+	0	NA	intron (NM_001007102, intron 2 of 21)	intron (NM_001007102, intron 2 of 21)	13656	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
21099	chr1	203342421	203342770	+	0	NA	intron (NR_103757, intron 1 of 1)	intron (NR_103757, intron 1 of 1)	8527	NR_103757	2331		NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding
25091	chr10	3877171	3878230	+	0	NA	Intergenic	Intergenic	43750	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
217084	chr8	23755301	23755650	+	0	NA	Intergenic	Intergenic	-48719	NM_001136271	137814		NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
226871	chr9	78115051	78115380	+	0	NA	Intergenic	Intergenic	-83404	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
111837	chr19	4555871	4556030	+	0	NA	intron (NM_032108, intron 6 of 16)	CpG	3734	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
11837	chr1	92952671	92952830	+	0	NA	intron (NM_001006605, intron 1 of 4)	L1MC4|LINE|L1	8712	NM_001006605	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
9311	chr1	46523151	46523250	+	0	NA	Intergenic	Intergenic	12315	NM_001357063	105378696		NM_001357063	ENSG00000282881	TMEM275	-	transmembrane protein 275	protein-coding
76802	chr15	77031171	77032130	+	0	NA	intron (NR_135552, intron 9 of 11)	intron (NR_135552, intron 9 of 11)	36524	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
108336	chr18	63992851	63993030	+	0	NA	intron (NM_001348367, intron 6 of 7)	LTR3A|LTR|ERVK	22859	NM_001348368	5271		NM_002640	ENSG00000166401	SERPINB8	C18orf53|CAP2|PI-8|PI8|PSS5	serpin family B member 8	protein-coding
152943	chr22	22848321	22849030	+	0	NA	Intergenic	Intergenic	25899	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
69738	chr14	98826601	98826800	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	115087	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
16610	chr1	155070621	155071680	+	0	NA	Intergenic	CpG	-7159	NR_040773	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
186	chr1	682221	682680	+	0	NA	Intergenic	Intergenic	4204	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
199938	chr6	127905151	127905600	+	0	NA	intron (NM_001164687, intron 1 of 5).2	L1MEg|LINE|L1	-4294	NM_001164685	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
149267	chr21	26170301	26171580	+	0	NA	promoter-TSS (NM_001136129)	promoter-TSS (NM_001136129)	-170	NM_000484	351		NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|alpha-sAPP|preA4	amyloid beta precursor protein	protein-coding
30332	chr10	77165721	77166000	+	0	NA	intron (NM_001322836, intron 5 of 27)	intron (NM_001322836, intron 5 of 27)	25029	NR_120654	101929310		NR_120654	ENSG00000225497	KCNMA1-AS2	-	KCNMA1 antisense RNA 2	ncRNA
19983	chr1	184986451	184986550	+	0	NA	Intergenic	L2a|LINE|L2	-11992	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
198228	chr6	98845621	98846100	+	0	NA	Intergenic	(TCCTT)n|Simple_repeat|Simple_repeat	11286	NM_005604	5454		NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
87222	chr16	69555701	69555900	+	0	NA	Intergenic	Intergenic	10068	NR_031719	100302119		NR_031719	ENSG00000223109	MIR1538	MIRN1538|hsa-mir-1538	microRNA 1538	ncRNA
40767	chr11	64858521	64860390	+	0	NA	intron (NM_001282444, intron 5 of 6)	AluSx|SINE|Alu	-14802	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
90231	chr17	640401	641000	+	0	NA	intron (NM_001366254, intron 7 of 19)	MIR3|SINE|MIR	74139	NM_018289	55275		NM_018289	ENSG00000141252	VPS53	HCCS1|PCH2E|hVps53L|pp13624	VPS53 subunit of GARP complex	protein-coding
69569	chr14	96911751	96912050	+	0	NA	Intergenic	Intergenic	-31679	NR_104113	145249		NR_104113		LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
35703	chr11	1926571	1927400	+	0	NA	intron (NM_001363561, intron 8 of 16)	intron (NM_001363561, intron 8 of 16)	4154	NM_001367843	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
207507	chr7	44771351	44772100	+	0	NA	Intergenic	L1ME2|LINE|L1	15537	NM_174929	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
34180	chr10	128125101	128125300	+	0	NA	intron (NM_001145966, intron 2 of 13)	intron (NM_001145966, intron 2 of 13)	1223	NM_002417	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
164550	chr3	63972121	63972500	+	0	NA	intron (NM_001128149, intron 1 of 8)	intron (NM_001128149, intron 1 of 8)	4516	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
137509	chr2	197172271	197172630	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-25541	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
38726	chr11	46699171	46699480	+	0	NA	intron (NM_004308, intron 1 of 12)	MIRb|SINE|MIR	1294	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
169845	chr3	177185801	177186000	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluJr4|SINE|Alu	10578	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
192952	chr6	27823871	27825230	+	0	NA	TTS (NM_021968)	TTS (NM_021968)	458	NM_021968	8363		NM_021968	ENSG00000197238	H4C11	H4-16|H4/e|H4C1|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2iv|H4FE|HIST1H4J|TEBIVANED2|TEVANED2|dJ160A22.2	H4 clustered histone 11	protein-coding
53327	chr12	64619821	64620330	+	0	NA	intron (NR_040718, intron 1 of 3)	L2a|LINE|L2	-2434	NR_030347	693129		NR_030347	ENSG00000207546	MIR548C	MIRN548C	microRNA 548c	ncRNA
48744	chr12	10720851	10720950	+	0	NA	intron (NM_003651, intron 1 of 9)	intron (NM_003651, intron 1 of 9)	2423	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
176020	chr4	82347001	82347500	+	0	NA	Intergenic	AluJb|SINE|Alu	26741	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
169370	chr3	160434821	160435700	+	0	NA	TTS (NM_001288753)	TTS (NM_001288753)	14526	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
158486	chr3	10021	11550	+	0	NA	promoter-TSS (NR_110824)	promoter-TSS (NR_110824)	-966	NR_110824	102723448		NR_110824	ENSG00000223587	LINC01986	-	long intergenic non-protein coding RNA 1986	ncRNA
220082	chr8	94025271	94025630	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	108503	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
134635	chr2	144427121	144427580	+	0	NA	intron (NM_014795, intron 3 of 9)	intron (NM_014795, intron 3 of 9)	-92264	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
213424	chr7	138008471	138009120	+	0	NA	Intergenic	Intergenic	-6709	NM_001253775	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
57309	chr12	121668551	121669830	+	0	NA	intron (NM_173855, intron 1 of 5)	intron (NM_173855, intron 1 of 5)	464	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
227250	chr9	89352321	89353280	+	0	NA	intron (NM_001282690, intron 14 of 16)	HAL1|LINE|L1	33949	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
173513	chr4	9608501	9608700	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-52284	NR_031688	100302277		NR_031688	ENSG00000221275	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2	microRNA 548i-2	ncRNA
74873	chr15	63568001	63568330	+	0	NA	intron (NR_046342, intron 9 of 15)	AluSc5|SINE|Alu	-29222	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
100267	chr17	59600821	59601080	+	0	NA	intron (NM_024612, intron 14 of 17)	L1MB3|LINE|L1	-18739	NM_001288653	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
230269	chr9	127917921	127918050	+	0	NA	promoter-TSS (NM_175039)	promoter-TSS (NM_175039)	-944	NM_175039	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
117287	chr19	19482751	19482850	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	32748	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
236481	chrX	71636521	71637300	+	0	NA	Intergenic	Intergenic	-18399	NM_001504	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
192602	chr6	26019701	26020900	+	0	NA	promoter-TSS (NM_003529)	promoter-TSS (NM_003529)	-151	NM_003529	8350		NM_003529	ENSG00000275714	H3C1	H3/A|H3C10|H3C11|H3C12|H3C2|H3C3|H3C4|H3C6|H3C7|H3C8|H3FA|HIST1H3A	H3 clustered histone 1	protein-coding
99847	chr17	55423851	55424150	+	0	NA	Intergenic	AluJr|SINE|Alu	-2165	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
212113	chr7	116214521	116215180	+	0	NA	intron (NM_015641, intron 1 of 6)	L2c|LINE|L2	4311	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
146982	chr20	53030071	53030230	+	0	NA	intron (NM_173485, intron 1 of 2)	MIR|SINE|MIR	57792	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
11014	chr1	84753371	84753780	+	0	NA	Intergenic	L2a|LINE|L2	-63107	NM_001166295	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
177356	chr4	110197601	110199180	+	0	NA	5' UTR (NM_024090, exon 1 of 4)	5' UTR (NM_024090, exon 1 of 4)	225	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
193364	chr6	30324651	30324950	+	0	NA	intron (NR_024052, intron 1 of 4)	AluSx|SINE|Alu	1334	NR_052012	414778		NR_052012	ENSG00000270604	HCG17	HCG18|LINC00046|NCRNA00046	HLA complex group 17	ncRNA
146213	chr20	48788651	48788750	+	0	NA	intron (NM_020820, intron 1 of 39)	MSTC|LTR|ERVL-MaLR	39299	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
80580	chr16	2873801	2874000	+	0	NA	Intergenic	AluJb|SINE|Alu	-9295	NM_001142500	114984		NM_138439	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
151416	chr21	46090821	46091480	+	0	NA	Intergenic	(GATGGT)n|Simple_repeat|Simple_repeat	-6962	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
111496	chr19	3969821	3970150	+	0	NA	intron (NM_001375658, intron 1 of 8)	intron (NM_001375658, intron 1 of 8)	1114	NM_001348	1613		NM_001348	ENSG00000167657	DAPK3	DLK|ZIP|ZIPK	death associated protein kinase 3	protein-coding
59812	chr13	30396471	30397130	+	0	NA	Intergenic	L1MB3|LINE|L1	-22886	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
46219	chr11	123822151	123822250	+	0	NA	Intergenic	L1MCc|LINE|L1	-15851	NM_001005325	390261		NM_001005325	ENSG00000196099	OR6M1	OR11-271	olfactory receptor family 6 subfamily M member 1	protein-coding
84453	chr16	30427071	30427380	+	0	NA	intron (NR_134470, intron 2 of 2)	AluY|SINE|Alu	2575	NR_134471	79077		NM_024096	ENSG00000179958	DCTPP1	CDA03|RS21C6|XTP3TPA	dCTP pyrophosphatase 1	protein-coding
36287	chr11	3809101	3810300	+	0	NA	intron (NR_144430, intron 1 of 3)	intron (NR_144430, intron 1 of 3)	1140	NR_104272	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
205975	chr7	26171321	26171600	+	0	NA	intron (NM_004289, intron 1 of 3)	AluSq2|SINE|Alu	19262	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
169527	chr3	170154621	170155600	+	0	NA	intron (NM_001308116, intron 4 of 14)	intron (NM_001308116, intron 4 of 14)	26623	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
14842	chr1	146369481	146370430	+	0	NA	Intergenic	CpG	-6852	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
229170	chr9	114516921	114517180	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-11577	NM_015404	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
55643	chr12	107131721	107132080	+	0	NA	Intergenic	Intergenic	-38351	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
120548	chr19	44952721	44952980	+	0	NA	Intergenic	AluY|SINE|Alu	-1735	NM_001282176	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
145703	chr20	45023421	45024030	+	0	NA	intron (NM_006282, intron 9 of 10)	intron (NM_006282, intron 9 of 10)	57213	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
171262	chr3	195865021	195865280	+	0	NA	intron (NM_005781, intron 14 of 14)	intron (NM_005781, intron 14 of 14)	-4746	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
129676	chr2	70300271	70300430	+	0	NA	intron (NM_001329753, intron 2 of 2)	AluSc8|SINE|Alu	1717	NM_032822	84908		NM_032822	ENSG00000035141	FAM136A	-	family with sequence similarity 136 member A	protein-coding
148788	chr21	8223481	8225090	+	0	NA	intron (NR_038958, intron 4 of 6)	intron (NR_038958, intron 4 of 6)	10397	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
2433	chr1	9605371	9605930	+	0	NA	TTS (NM_001010866)	TTS (NM_001010866)	16739	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
87714	chr16	75012001	75012980	+	0	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	13466	NM_032268	84937		NM_032268	ENSG00000186187	ZNRF1	NIN283	zinc and ring finger 1	protein-coding
83516	chr16	27452851	27453630	+	0	NA	non-coding (NR_037158, exon 1 of 3)	non-coding (NR_037158, exon 1 of 3)	153	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
1990	chr1	6634621	6635230	+	0	NA	3' UTR (NM_018198, exon 16 of 16)	3' UTR (NM_018198, exon 16 of 16)	9775	NM_001195752	90326		NM_138350	ENSG00000041988	THAP3	-	THAP domain containing 3	protein-coding
178963	chr4	159267351	159267650	+	0	NA	promoter-TSS (NM_001351727)	promoter-TSS (NM_001351727)	-309	NM_001351727	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
232265	chr9	134417471	134417630	+	0	NA	intron (NM_001291921, intron 4 of 8)	(GGGGCCA)n|Simple_repeat|Simple_repeat	10990	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
201236	chr6	143679151	143679330	+	0	NA	intron (NM_001100165, intron 1 of 11)	intron (NM_001100165, intron 1 of 11)	1275	NM_001100164	9749		NM_014721	ENSG00000112419	PHACTR2	C6orf56	phosphatase and actin regulator 2	protein-coding
103355	chr17	78109471	78109900	+	0	NA	TTS (NM_018996)	TTS (NM_018996)	19070	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
189211	chr5	171437421	171437680	+	0	NA	intron (NM_003862, intron 3 of 4)	intron (NM_003862, intron 3 of 4)	17903	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
141718	chr2	241852371	241852980	+	0	NA	exon (NM_005018, exon 2 of 5)	exon (NM_005018, exon 2 of 5)	6219	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
12578	chr1	108831371	108831530	+	0	NA	intron (NR_049760, intron 8 of 13)	L1ME4c|LINE|L1	25644	NM_152763	254268		NM_152763	ENSG00000162641	AKNAD1	C1orf62	AKNA domain containing 1	protein-coding
87675	chr16	74604021	74604400	+	0	NA	intron (NM_001145667, intron 1 of 25)	MER2B|DNA|TcMar-Tigger	2904	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
111468	chr19	3942971	3943330	+	0	NA	TTS (NM_001289117)	TTS (NM_001289117)	9679	NM_001375469	27231		NM_014446	ENSG00000077009	NMRK2	ITGB1BP3|MIBP|NRK2	nicotinamide riboside kinase 2	protein-coding
215799	chr8	2214651	2215350	+	0	NA	Intergenic	Intergenic	138411	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
118665	chr19	37470651	37471330	+	0	NA	intron (NM_144694, intron 2 of 4)	AluSx|SINE|Alu	1419	NM_001321991	148268		NM_144694	ENSG00000171827	ZNF570	-	zinc finger protein 570	protein-coding
3578	chr1	16206301	16209650	+	0	NA	exon (NM_153213, exon 3 of 16)	exon (NM_153213, exon 3 of 16)	4677	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
73441	chr15	43220151	43220850	+	0	NA	intron (NM_001114134, intron 1 of 12)	(ACC)n|Simple_repeat|Simple_repeat	518	NM_000119	2038		NM_000119	ENSG00000166947	EPB42	PA|SPH5	erythrocyte membrane protein band 4.2	protein-coding
125428	chr2	11784121	11784450	+	0	NA	intron (NM_145693, intron 8 of 19)	AluSz|SINE|Alu	16841	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
21127	chr1	203644821	203645280	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	17113	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
128854	chr2	63860951	63861680	+	0	NA	intron (NM_001377529, intron 5 of 11)	intron (NM_001377529, intron 5 of 11)	19419	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
118801	chr19	38452971	38453230	+	0	NA	intron (NM_000540, intron 13 of 105)	intron (NM_000540, intron 13 of 105)	19409	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
5426	chr1	25556601	25557300	+	0	NA	intron (NM_015627, intron 3 of 8)	intron (NM_015627, intron 3 of 8)	13344	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
163060	chr3	49938271	49938780	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1625	NM_001349192	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
122985	chr19	50811221	50811700	+	0	NA	Intergenic	Intergenic	-6221	NR_038359	284365		NR_038359	ENSG00000293414	LINC01869	-	long intergenic non-protein coding RNA 1869	ncRNA
22630	chr1	223697901	223698680	+	0	NA	Intergenic	Intergenic	-3303	NM_001146068	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
210866	chr7	101136751	101137350	+	0	NA	exon (NM_000602, exon 8 of 9)	exon (NM_000602, exon 8 of 9)	9946	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
145604	chr20	44617271	44617780	+	0	NA	intron (NM_007066, intron 3 of 3)	intron (NM_007066, intron 3 of 3)	34174	NM_000022	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
207886	chr7	50399071	50399230	+	0	NA	intron (NM_006060, intron 7 of 7)	intron (NM_006060, intron 7 of 7)	51200	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
50638	chr12	48714751	48715250	+	0	NA	intron (NM_001240, intron 1 of 8)	AluSx1|SINE|Alu	1707	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
180414	chr5	10368521	10369450	+	0	NA	intron (NM_001270661, intron 1 of 22)	MLT1I|LTR|ERVL-MaLR	15290	NM_001270661	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
79998	chr16	1876451	1876800	+	0	NA	Intergenic	Intergenic	-4461	NM_001163560	254528		NM_152764	ENSG00000162039	MEIOB	C16orf73|POF23|SPGF22|gs129	meiosis specific with OB-fold	protein-coding
206118	chr7	27243571	27243930	+	0	NA	intron (NM_001989, intron 1 of 2)	intron (NM_001989, intron 1 of 2)	948	NM_001304520	2128		NM_001989	ENSG00000106038	EVX1	EVX-1	even-skipped homeobox 1	protein-coding
212736	chr7	129900921	129901380	+	0	NA	intron (NM_001202498, intron 1 of 6)	HAL1|LINE|L1	51810	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
133178	chr2	112869651	112869830	+	0	NA	Intergenic	Intergenic	-32961	NM_000576	3553		NM_000576	ENSG00000125538	IL1B	IL-1|IL1-BETA|IL1F2|IL1beta	interleukin 1 beta	protein-coding
145954	chr20	46119401	46119650	+	0	NA	intron (NR_136327, intron 1 of 7)	intron (NR_136327, intron 1 of 7)	1211	NR_126502	958		NM_001250	ENSG00000101017	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule	protein-coding
91250	chr17	3960701	3960900	+	0	NA	intron (NM_174953, intron 1 of 22)	L1ME4b|LINE|L1	3637	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
41482	chr11	66220051	66220550	+	0	NA	intron (NM_018026, intron 8 of 23)	intron (NM_018026, intron 8 of 23)	-36994	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
113449	chr19	9836851	9837150	+	0	NA	intron (NR_038422, intron 2 of 4)	AluSc8|SINE|Alu	1682	NM_006221	5300		NM_006221	ENSG00000127445	PIN1	DOD|UBL5	peptidylprolyl cis/trans isomerase, NIMA-interacting 1	protein-coding
199074	chr6	111649301	111649700	+	0	NA	Intergenic	MIR3|SINE|MIR	-43226	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
217317	chr8	27409051	27409350	+	0	NA	intron (NM_173174, intron 7 of 35)	MLT1C|LTR|ERVL-MaLR	-24170	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
20277	chr1	195195151	195195800	+	0	NA	Intergenic	L1MCc|LINE|L1	893240	NR_146895	105371673		NR_146895		LINC01724	-	long intergenic non-protein coding RNA 1724	ncRNA
92527	chr17	8928521	8928780	+	0	NA	intron (NM_001142633, intron 1 of 18)	L1MD1|LINE|L1	-16133	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
104131	chr17	80364051	80364550	+	0	NA	intron (NM_001256071, intron 41 of 67)	intron (NM_001256071, intron 41 of 67)	-50867	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
79064	chr16	151301	151500	+	0	NA	Intergenic	L1MD|LINE|L1	-1244	NM_005332	3050		NM_005332	ENSG00000130656	HBZ	HBAZ|HBZ-T1|HBZ1	hemoglobin subunit zeta	protein-coding
166177	chr3	111675921	111676250	+	0	NA	TTS (NR_046733)	TTS (NR_046733)	1348	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
38203	chr11	36388951	36389480	+	0	NA	intron (NM_024841, intron 2 of 9)	L1ME4b|LINE|L1	-11782	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
170582	chr3	186831801	186832000	+	0	NA	Intergenic	Intergenic	-6379	NR_125409	102724699		NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
81549	chr16	9113521	9113980	+	0	NA	intron (NM_014117, intron 3 of 3)	intron (NM_014117, intron 3 of 3)	22106	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
53097	chr12	57756621	57757430	+	0	NA	exon (NM_138396, exon 2 of 4)	exon (NM_138396, exon 2 of 4)	1922	NM_138396	92979		NM_138396	ENSG00000139266	MARCHF9	MARCH-IX|MARCH9|RNF179	membrane associated ring-CH-type finger 9	protein-coding
101806	chr17	73313651	73314450	+	0	NA	Intergenic	AluJo|SINE|Alu	-2049	NM_012121	23580		NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein 4	protein-coding
35226	chr11	828601	829080	+	0	NA	intron (NM_173584, intron 1 of 7)	intron (NM_173584, intron 1 of 7)	580	NM_173584	283229		NM_173584	ENSG00000177685	CRACR2B	EFCAB4A	calcium release activated channel regulator 2B	protein-coding
85541	chr16	53124271	53124430	+	0	NA	intron (NM_001308319, intron 1 of 38)	THE1B|LTR|ERVL-MaLR	-6662	NM_001352127	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
163119	chr3	50125621	50126200	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-24922	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
223013	chr8	143286771	143287130	+	0	NA	Intergenic	MLT1E|LTR|ERVL-MaLR	-4467	NM_030895	79943		NM_030895	ENSG00000185730	ZNF696	-	zinc finger protein 696	protein-coding
74001	chr15	52067271	52067800	+	0	NA	TTS (NM_002748)	TTS (NM_002748)	45240	NM_020396	10017		NM_020396	ENSG00000137875	BCL2L10	BCL-B|Boo|Diva|bcl2-L-10	BCL2 like 10	protein-coding
230137	chr9	127732321	127732800	+	0	NA	TTS (NM_001317037)	TTS (NM_001317037)	2734	NM_001252018	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
75416	chr15	65775151	65776100	+	0	NA	intron (NM_001376919, intron 1 of 31)	AluSx|SINE|Alu	16668	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
118307	chr19	35455721	35455980	+	0	NA	Intergenic	MIRb|SINE|MIR	7593	NM_001370087	2867		NM_005306	ENSG00000126262	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
100139	chr17	58512501	58512700	+	0	NA	intron (NM_004687, intron 3 of 18)	intron (NM_004687, intron 3 of 18)	2038	NM_001378067	9110		NM_004687	ENSG00000108389	MTMR4	FYVE-DSP2|ZFYVE11	myotubularin related protein 4	protein-coding
143326	chr20	25548651	25549150	+	0	NA	intron (NM_001318226, intron 1 of 22)	intron (NM_001318226, intron 1 of 22)	36631	NM_025176	22981		NM_025176	ENSG00000101004	NINL	NLP	ninein like	protein-coding
156765	chr22	41848251	41848750	+	0	NA	intron (NR_103834, intron 1 of 21)	intron (NR_103834, intron 1 of 21)	-13835	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
229723	chr9	124863701	124863900	+	0	NA	intron (NM_030978, intron 1 of 5)	intron (NM_030978, intron 1 of 5)	1670	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
98973	chr17	48724501	48725450	+	0	NA	promoter-TSS (NR_036150)	promoter-TSS (NR_036150)	-500	NR_036150	100422978		NR_036150	ENSG00000263602	MIR3185	-	microRNA 3185	ncRNA
226520	chr9	71894751	71895430	+	0	NA	intron (NM_016014, intron 1 of 4)	intron (NM_016014, intron 1 of 4)	16103	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
131198	chr2	95035571	95035730	+	0	NA	intron (NM_022440, intron 1 of 1)	intron (NM_022440, intron 1 of 1)	9942	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
146495	chr20	49886251	49886550	+	0	NA	intron (NR_048540, intron 10 of 11)	intron (NR_048540, intron 10 of 11)	22541	NR_162136	113219455		NR_162136		MIR12122	-	microRNA 12122	ncRNA
20757	chr1	200992271	200992630	+	0	NA	intron (NM_017596, intron 15 of 33)	intron (NM_017596, intron 15 of 33)	31264	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
130705	chr2	86660711	86660850	+	0	NA	intron (NM_001198954, intron 2 of 7)	L1HS|LINE|L1	-36903	NM_001198951	7844		NM_005667	ENSG00000239305	RNF103	HKF-1|KF-1|KF1|ZFP-103|ZFP103	ring finger protein 103	protein-coding
34833	chr11	303451	304100	+	0	NA	Intergenic	Intergenic	-4249	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
88816	chr16	87406521	87407130	+	0	NA	3' UTR (NM_015144, exon 13 of 13)	3' UTR (NM_015144, exon 13 of 13)	14489	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
65164	chr14	49581651	49582250	+	0	NA	intron (NM_001030001, intron 2 of 2)	AluJb|SINE|Alu	4430	NM_001032	6235		NM_001032	ENSG00000213741	RPS29	DBA13|S29|uS14	ribosomal protein S29	protein-coding
217811	chr8	33640201	33640480	+	0	NA	Intergenic	Intergenic	-40234	NM_001305115	78986		NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding
187943	chr5	149141371	149142300	+	0	NA	5' UTR (NM_001301015, exon 1 of 23)	5' UTR (NM_001301015, exon 1 of 23)	104	NM_001370418	22885		NM_014945	ENSG00000173210	ABLIM3	HMFN1661	actin binding LIM protein family member 3	protein-coding
233969	chrX	2692201	2692590	+	0	NA	intron (NR_135623, intron 1 of 10)	intron (NR_135623, intron 1 of 10)	1100	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
221732	chr8	127630251	127630430	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	103627	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
103967	chr17	79970471	79970880	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	-19822	NM_001271845	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
91770	chr17	6924051	6924550	+	0	NA	Intergenic	L1MA7|LINE|L1	30523	NR_120453	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
194862	chr6	34528201	34529000	+	0	NA	intron (NM_001199583, intron 3 of 9)	intron (NM_001199583, intron 3 of 9)	13728	NM_001199583	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
217536	chr8	29265051	29265350	+	0	NA	Intergenic	AluJr|SINE|Alu	-2130	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
186104	chr5	134124171	134126630	+	0	NA	intron (NM_001366502, intron 1 of 7)	intron (NM_001366502, intron 1 of 7)	1782	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
229624	chr9	124017521	124018050	+	0	NA	intron (NM_004789, intron 3 of 4)	CpG	6017	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
64424	chr14	24186851	24186950	+	0	NA	non-coding (NR_051979, exon 8 of 30)	non-coding (NR_051979, exon 8 of 30)	1916	NM_024658	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
21329	chr1	204528371	204528730	+	0	NA	intron (NM_001278519, intron 3 of 4)	intron (NM_001278519, intron 3 of 4)	12144	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
96015	chr17	39231521	39232680	+	0	NA	Intergenic	Intergenic	-5670	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
70901	chr14	103923851	103924150	+	0	NA	Intergenic	LTR46|LTR|ERV1	-2471	NM_004894	9556		NM_004894	ENSG00000156411	ATP5MJ	6.8PL|ATP5MPL|C14orf2|MLQ|MP68|PLPM	ATP synthase membrane subunit j	protein-coding
25321	chr10	6222621	6223280	+	0	NA	exon (NM_001282630, exon 11 of 15)	exon (NM_001282630, exon 11 of 15)	20018	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
123289	chr19	53550501	53551400	+	0	NA	intron (NM_001317113, intron 2 of 4)	AluSg|SINE|Alu	-3549	NM_001253801	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
192420	chr6	24867151	24867600	+	0	NA	intron (NM_001286447, intron 6 of 13)	MER5A|DNA|hAT-Charlie	9895	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
149139	chr21	17786201	17786400	+	0	NA	intron (NR_038871, intron 2 of 3)	AluJr|SINE|Alu	6209	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
58195	chr12	125983471	125984030	+	0	NA	promoter-TSS (NR_034132)	promoter-TSS (NR_034132)	-376	NR_034132	400084		NR_034132	ENSG00000249267	LINC00939	-	long intergenic non-protein coding RNA 939	ncRNA
70372	chr14	101890771	101891030	+	0	NA	intron (NM_178587, intron 6 of 11)	AluSx1|SINE|Alu	-73673	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
219921	chr8	86355071	86356130	+	0	NA	intron (NM_007013, intron 1 of 24)	intron (NM_007013, intron 1 of 24)	13053	NM_007013	11059		NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
69820	chr14	99217801	99219050	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	53772	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
231948	chr9	133136651	133136750	+	0	NA	intron (NM_001042368, intron 1 of 17)	AluSg7|SINE|Alu	-5543	NM_001271774	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
218231	chr8	42047071	42047800	+	0	NA	intron (NM_001305878, intron 2 of 13)	AluJo|SINE|Alu	-4315	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
52072	chr12	54039601	54039930	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	5815	NR_030753	693200		NR_030753	ENSG00000207571	MIR615	MIRN615|hsa-mir-615|mir-615	microRNA 615	ncRNA
23184	chr1	226912701	226912980	+	0	NA	Intergenic	Intergenic	-27454	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
45244	chr11	117982621	117983680	+	0	NA	Intergenic	Intergenic	-3244	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
58408	chr12	131910951	131911680	+	0	NA	intron (NM_003565, intron 12 of 27)	intron (NM_003565, intron 12 of 27)	16693	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
200408	chr6	134529771	134530430	+	0	NA	intron (NR_125855, intron 2 of 3)	MIRc|SINE|MIR	9905	NR_125855	101928304		NR_125855	ENSG00000232310	LINC03002	-	long intergenic non-protein coding RNA 3002	ncRNA
212360	chr7	127620021	127620780	+	0	NA	Intergenic	Intergenic	-2258	NM_001366110	5078		NM_006193	ENSG00000106331	PAX4	KPD|MODY9	paired box 4	protein-coding
58160	chr12	124946821	124947080	+	0	NA	3' UTR (NM_032656, exon 27 of 27)	3' UTR (NM_032656, exon 27 of 27)	31403	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
132631	chr2	108627151	108627250	+	0	NA	intron (NM_001371500, intron 1 of 2)	Tigger3c|DNA|TcMar-Tigger	5949	NM_001371500	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
133062	chr2	112346251	112346950	+	0	NA	Intergenic	(CCACCA)n|Simple_repeat|Simple_repeat	71003	NM_198581	376940		NM_198581	ENSG00000188177	ZC3H6	ZC3HDC6	zinc finger CCCH-type containing 6	protein-coding
3828	chr1	16893501	16893700	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-2380	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
134552	chr2	143936751	143937450	+	0	NA	promoter-TSS (NR_110237)	promoter-TSS (NR_110237)	33	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
29920	chr10	73252051	73253340	+	0	NA	promoter-TSS (NR_134459)	promoter-TSS (NR_134459)	-46	NR_134459	414245		NR_038373	ENSG00000236756	DNAJC9-AS1	C10orf103|bA537A6.3	DNAJC9 and MRPS16 antisense RNA 1	ncRNA
113476	chr19	9939601	9939950	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-3260	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
16041	chr1	152355951	152357030	+	0	NA	exon (NM_001014342, exon 3 of 3)	exon (NM_001014342, exon 3 of 3)	3516	NM_001014342	388698		NM_001014342	ENSG00000143520	FLG2	IFPS|PSS6	filaggrin 2	protein-coding
234261	chrX	13151621	13152290	+	0	NA	Intergenic	Intergenic	-107335	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
108760	chr18	77124471	77125250	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	7923	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
148294	chr20	63710021	63710280	+	0	NA	intron (NM_181485, intron 2 of 6)	AluY|SINE|Alu	2111	NM_181485	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
114783	chr19	13767801	13768830	+	0	NA	intron (NM_001031727, intron 3 of 5)	L2a|LINE|L2	3793	NM_001031727	84245		NM_032285	ENSG00000037757	MRI1	M1Pi|MRDI|MTNA|Ypr118w	methylthioribose-1-phosphate isomerase 1	protein-coding
10343	chr1	64921121	64921650	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	45164	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
4261	chr1	19648751	19649080	+	0	NA	intron (NM_001278166, intron 1 of 3)	intron (NM_001278166, intron 1 of 3)	1305	NM_001278166	4681		NM_005380	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	NBL1, DAN family BMP antagonist	protein-coding
51384	chr12	51885901	51886380	+	0	NA	Intergenic	Intergenic	-1963	NM_182608	341405		NM_182608	ENSG00000167612	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
237035	chrX	102899971	102900130	+	0	NA	intron (NR_146589, intron 6 of 11)	intron (NR_146589, intron 6 of 11)	-37222	NM_001031834	282808		NM_001031834	ENSG00000102128	RAB40AL	MRXSMP|RAR2|RLGP	RAB40A like	protein-coding
186472	chr5	138030271	138030430	+	0	NA	intron (NM_016603, intron 1 of 22)	AluJo|SINE|Alu	-2424	NR_037900	100130172		NR_037900		FAM13B-AS1	-	FAM13B antisense RNA 1	ncRNA
211207	chr7	102621701	102622380	+	0	NA	Intergenic	AluSz|SINE|Alu	-5282	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
57107	chr12	121087921	121088180	+	0	NA	Intergenic	Intergenic	-44826	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
7124	chr1	32178301	32178830	+	0	NA	Intergenic	Intergenic	-1110	NM_175852	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
49681	chr12	30696751	30696850	+	0	NA	promoter-TSS (NM_006390)	promoter-TSS (NM_006390)	-931	NM_006390	10526		NM_006390	ENSG00000133704	IPO8	RANBP8|VISS	importin 8	protein-coding
53129	chr12	57838981	57839580	+	0	NA	intron (NM_005730, intron 1 of 7)	MIR3|SINE|MIR	7449	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
108491	chr18	72543701	72543900	+	0	NA	intron (NM_182511, intron 1 of 4)	CpG-12625	542	NM_182511	147381		NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
122492	chr19	49566871	49567030	+	0	NA	intron (NM_001270960, intron 1 of 8)	AluSx|SINE|Alu	13606	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
37824	chr11	33158351	33158950	+	0	NA	intron (NM_001033505, intron 1 of 2)	L1MC4|LINE|L1	2830	NM_001326	1479		NM_001326	ENSG00000176102	CSTF3	CSTF-77	cleavage stimulation factor subunit 3	protein-coding
111004	chr19	3045151	3045580	+	0	NA	intron (NM_001144761, intron 2 of 19)	intron (NM_001144761, intron 2 of 19)	2270	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
121051	chr19	45826301	45826900	+	0	NA	intron (NM_004819, intron 16 of 26)	L2b|LINE|L2	-11292	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
106642	chr18	22704271	22704430	+	0	NA	Intergenic	Intergenic	82487	NR_110782	101927571		NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
44310	chr11	102358901	102359500	+	0	NA	intron (NM_001256166, intron 3 of 8)	L1MA9|LINE|L1	11826	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
114684	chr19	13106421	13106700	+	0	NA	intron (NM_001136035, intron 14 of 16)	AluSx|SINE|Alu	-3702	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
77547	chr15	84751801	84752200	+	0	NA	intron (NM_014630, intron 1 of 10)	AluJr|SINE|Alu	3408	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
47846	chr12	6611901	6612700	+	0	NA	Intergenic	Intergenic	-4921	NM_001273	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
108517	chr18	74294301	74294500	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-2437	NM_001190807	1528		NM_001914	ENSG00000166347	CYB5A	CYB5|MCB5|METAG	cytochrome b5 type A	protein-coding
238519	chrX	153687171	153688650	+	0	NA	promoter-TSS (NM_001142805)	promoter-TSS (NM_001142805)	-16	NM_005629	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
223319	chr8	143817321	143818700	+	0	NA	exon (NM_014281, exon 7 of 11)	exon (NM_014281, exon 7 of 11)	-2237	NM_015356	23513		NM_015356	ENSG00000180900	SCRIB	CRIB1|SCRB1|SCRIB1|Vartul|oSCRIB	scribble planar cell polarity protein	protein-coding
102135	chr17	75079651	75080250	+	0	NA	Intergenic	Intergenic	-7815	NM_001271765	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
15338	chr1	149919101	149920030	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	-1721	NM_014849	9900		NM_014849	ENSG00000159164	SV2A	DEE113|SLC22B1|SV2	synaptic vesicle glycoprotein 2A	protein-coding
131166	chr2	91748951	91749150	+	0	NA	Intergenic	CpG	-26292	NR_003503	645367		NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
67433	chr14	70643951	70644450	+	0	NA	intron (NM_015351, intron 1 of 2)	intron (NM_015351, intron 1 of 2)	2284	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
127447	chr2	42188371	42188730	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-18319	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226377	chr9	70270801	70271000	+	0	NA	intron (NM_015110, intron 3 of 24)	AluSx1|SINE|Alu	11922	NM_015110	23137		NM_015110	ENSG00000198887	SMC5	ATELS2|SMC5L1	structural maintenance of chromosomes 5	protein-coding
66236	chr14	61337651	61338500	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	16632	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
111331	chr19	3634001	3634280	+	0	NA	intron (NM_012398, intron 16 of 17)	intron (NM_012398, intron 16 of 17)	-7325	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
231660	chr9	131664921	131665200	+	0	NA	intron (NM_001377935, intron 1 of 26)	L2|LINE|L2	-13657	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
202707	chr6	158821301	158821830	+	0	NA	intron (NR_102425, intron 2 of 2)	intron (NR_102425, intron 2 of 2)	-2197	NM_001111077	7430		NM_003379	ENSG00000092820	EZR	CVIL|CVL|HEL-S-105|VIL2	ezrin	protein-coding
132709	chr2	109030971	109032600	+	0	NA	Intergenic	Intergenic	-42565	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
129649	chr2	70192101	70192830	+	0	NA	Intergenic	MER49|LTR|ERV1	-1446	NR_145967	54980		NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
124981	chr2	9142701	9143400	+	0	NA	Intergenic	Intergenic	-63715	NM_001135191	8853		NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
32067	chr10	101088301	101088700	+	0	NA	TTS (NR_130722)	TTS (NR_130722)	22117	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
156839	chr22	41952801	41953330	+	0	NA	intron (NR_024355, intron 1 of 1)	intron (NR_024355, intron 1 of 1)	878	NR_024355								
139372	chr2	221555221	221555680	+	0	NA	intron (NM_004438, intron 3 of 17)	intron (NM_004438, intron 3 of 17)	16854	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
95953	chr17	39055621	39055880	+	0	NA	Intergenic	AluY|SINE|Alu	-1269	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
186565	chr5	138474471	138475800	+	0	NA	Intergenic	AluSp|SINE|Alu	9656	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
101587	chr17	68081021	68081700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-20195	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
62540	chr13	99607651	99608000	+	0	NA	intron (NM_206808, intron 1 of 8)	AluSz6|SINE|Alu	1135	NR_104592	171425		NM_206808	ENSG00000125246	CLYBL	CLB	citramalyl-CoA lyase	protein-coding
231589	chr9	131534421	131535150	+	0	NA	Intergenic	Intergenic	-3510	NR_134667	83549		NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
134756	chr2	145411451	145412000	+	0	NA	Intergenic	Intergenic	743758	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
48783	chr12	11729151	11729450	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	79626	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
72314	chr15	31239021	31239530	+	0	NA	Intergenic	L1MEd|LINE|L1	-8413	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
146778	chr20	50912921	50913350	+	0	NA	intron (NM_001347511, intron 1 of 4)	AluSz6|SINE|Alu	-3344	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
169435	chr3	161409001	161409300	+	0	NA	Intergenic	Intergenic	-17277	NR_102265	101243545		NR_102265	ENSG00000240567	LINC02067	-	long intergenic non-protein coding RNA 2067	ncRNA
110002	chr19	1426151	1426650	+	0	NA	intron (NM_170711, intron 7 of 12)	intron (NM_170711, intron 7 of 12)	-11996	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
91934	chr17	7333851	7334150	+	0	NA	Intergenic	Intergenic	-2529	NM_014716	9744		NM_014716	ENSG00000072818	ACAP1	CENTB1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding
8758	chr1	42723071	42723630	+	0	NA	Intergenic	L1ME2|LINE|L1	16886	NM_148960	149461		NM_148960	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
59241	chr13	23899601	23900080	+	0	NA	Intergenic	Intergenic	-2338	NR_104426	387911		NM_001007537	ENSG00000205863	C1QTNF9B	CTRP9B	C1q and TNF related 9B	protein-coding
25629	chr10	8086321	8086580	+	0	NA	Intergenic	Intergenic	31762	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
21621	chr1	206579051	206579150	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	21936	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
184574	chr5	102832571	102832930	+	0	NA	intron (NM_001364582, intron 1 of 24)	intron (NM_001364582, intron 1 of 24)	24552	NM_001364582	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
141540	chr2	241313471	241313630	+	0	NA	intron (NM_005336, intron 1 of 27)	AluSz|SINE|Alu	-1637	NM_006155	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
198069	chr6	90232351	90232780	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	64278	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
231355	chr9	130451571	130452050	+	0	NA	intron (NM_000050, intron 2 of 15)	intron (NM_000050, intron 2 of 15)	6849	NM_054012	445		NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
173964	chr4	26028701	26029100	+	0	NA	Intergenic	CpG	114708	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
133236	chr2	113217301	113217700	+	0	NA	3' UTR (NM_013992, exon 9 of 9)	3' UTR (NM_013992, exon 9 of 9)	-18027	NR_047570	654433		NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
14211	chr1	143192551	143193130	+	0	NA	Intergenic	Intergenic	229752	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
35514	chr11	1551471	1551980	+	0	NA	Intergenic	Intergenic	20546	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
197956	chr6	89953801	89954080	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	59471	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
33993	chr10	124677201	124677400	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-26728	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
78155	chr15	90413851	90414230	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	25798	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
172352	chr4	1719971	1721710	+	0	NA	promoter-TSS (NM_006342)	promoter-TSS (NM_006342)	483	NM_001127266	92305		NM_138385	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129, E3 ubiquitin ligase	protein-coding
33822	chr10	123771951	123772910	+	0	NA	intron (NM_198148, intron 7 of 13)	intron (NM_198148, intron 7 of 13)	106075	NM_153442	2849		NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding
41980	chr11	67372701	67374950	+	0	NA	promoter-TSS (NM_013246)	promoter-TSS (NM_013246)	-227	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
151541	chr21	46515001	46515900	+	0	NA	intron (NM_206891, intron 8 of 19)	intron (NM_206891, intron 8 of 19)	52979	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
136454	chr2	176856671	176857030	+	0	NA	Intergenic	Intergenic	219096	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
50014	chr12	42370851	42371450	+	0	NA	intron (NM_201515, intron 5 of 10)	AluJr|SINE|Alu	39352	NM_001364834	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
6302	chr1	27624601	27625800	+	0	NA	intron (NM_005248, intron 1 of 12)	intron (NM_005248, intron 1 of 12)	1040	NM_001042747	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
109993	chr19	1418901	1419500	+	0	NA	intron (NM_001352033, intron 4 of 11)	intron (NM_001352033, intron 4 of 11)	11614	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
227207	chr9	88322551	88323330	+	0	NA	Intergenic	Intergenic	-65504	NM_006717	10927		NM_006717	ENSG00000106723	SPIN1	SPIN|TDRD24	spindlin 1	protein-coding
120710	chr19	45235601	45235800	+	0	NA	intron (NM_001382422, intron 2 of 11)	intron (NM_001382422, intron 2 of 11)	9707	NM_001382422	90332		NM_138568	ENSG00000283632	EXOC3L2	XTP7	exocyst complex component 3 like 2	protein-coding
197606	chr6	81750721	81750980	+	0	NA	intron (NM_017633, intron 2 of 2)	intron (NM_017633, intron 2 of 2)	1831	NM_017633	55603		NM_017633	ENSG00000112773	TENT5A	C6orf37|FAM46A|OI18|XTP11	terminal nucleotidyltransferase 5A	protein-coding
209143	chr7	75125071	75125650	+	0	NA	intron (NM_001003795, intron 6 of 15)	MER44B|DNA|TcMar-Tigger	31328	NM_001368302	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
1845	chr1	6291551	6291850	+	0	NA	intron (NM_007274, intron 7 of 8)	intron (NM_007274, intron 7 of 8)	-30602	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
48821	chr12	12265601	12266050	+	0	NA	intron (NM_002336, intron 1 of 22)	intron (NM_002336, intron 1 of 22)	1219	NM_002336	4040		NM_002336	ENSG00000070018	LRP6	ADCAD2|STHAG7	LDL receptor related protein 6	protein-coding
179338	chr4	182916621	182918350	+	0	NA	promoter-TSS (NM_001921)	promoter-TSS (NM_001921)	-8	NM_001921	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
111447	chr19	3817971	3818130	+	0	NA	intron (NM_015174, intron 12 of 18)	L1MB4|LINE|L1	-16251	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
226093	chr9	62815721	62816630	+	0	NA	Intergenic	L1M1|LINE|L1	14710	NR_121647	103352539		NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
188995	chr5	167859471	167860550	+	0	NA	intron (NM_001080428, intron 1 of 24)	SVA_F|Retroposon|SVA	105081	NM_001080428	57451		NM_001080428	ENSG00000145934	TENM2	ODZ2|TEN-M2|TEN2|TNM2|ten-2	teneurin transmembrane protein 2	protein-coding
127331	chr2	39095121	39095580	+	0	NA	intron (NM_001382394, intron 1 of 22)	intron (NM_001382394, intron 1 of 22)	25701	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
50837	chr12	49113371	49113730	+	0	NA	Intergenic	Intergenic	-2650	NM_001300751	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
166199	chr3	111857071	111857630	+	0	NA	intron (NM_001134437, intron 2 of 17)	AluJb|SINE|Alu	-1830	NM_145753	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
127004	chr2	36817021	36817280	+	0	NA	Intergenic	L2|LINE|L2	120443	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
207550	chr7	44844501	44844900	+	0	NA	intron (NM_201516, intron 1 of 3)	L1MB3|LINE|L1	3387	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
117051	chr19	18942921	18943180	+	0	NA	intron (NR_134913, intron 1 of 2)	FLAM_C|SINE|Alu	-1833	NM_004838	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
164507	chr3	62359551	62359650	+	0	NA	Intergenic	Intergenic	13950	NM_018008	55079		NM_018008	ENSG00000153266	FEZF2	FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312	FEZ family zinc finger 2	protein-coding
201178	chr6	143038951	143039050	+	0	NA	Intergenic	Intergenic	-1418	NR_038987	100507489		NR_038987		LINC01277	-	long intergenic non-protein coding RNA 1277	ncRNA
210909	chr7	101201851	101202530	+	0	NA	Intergenic	CpG	-1154	NM_178176	346606		NM_178176	ENSG00000106384	MOGAT3	DC7|DGAT2L2|MGAT3	monoacylglycerol O-acyltransferase 3	protein-coding
143415	chr20	29519751	29519930	+	0	NA	Intergenic	Intergenic	-22506	NR_146067	102723390		NR_146067		FRG1EP	-	FSHD region gene 1 family member E, pseudogene	pseudo
230028	chr9	127221451	127222350	+	0	NA	3' UTR (NM_001322324, exon 18 of 18)	3' UTR (NM_001322324, exon 18 of 18)	-41762	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
113765	chr19	10515401	10516600	+	0	NA	intron (NM_001166215, intron 1 of 1)	(CA)n|Simple_repeat|Simple_repeat	1447	NM_030760	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
189354	chr5	172286201	172286830	+	0	NA	intron (NR_130933, intron 1 of 1)	AluY|SINE|Alu	918	NR_130933	100288254		NM_001007542		LOC100288254	-	uncharacterized LOC100288254	ncRNA
19944	chr1	184795021	184795280	+	0	NA	exon (NM_052966, exon 14 of 14)	exon (NM_052966, exon 14 of 14)	-40292	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
81287	chr16	4668621	4668880	+	0	NA	intron (NM_001142291, intron 8 of 15)	intron (NM_001142291, intron 8 of 15)	-2568	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
120567	chr19	44990201	44990600	+	0	NA	exon (NM_001294, exon 10 of 14)	exon (NM_001294, exon 10 of 14)	-11064	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
48128	chr12	7899151	7899650	+	0	NA	Intergenic	AluY|SINE|Alu	-8204	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
13759	chr1	117006551	117007950	+	0	NA	intron (NM_001256106, intron 1 of 9)	L1ME3B|LINE|L1	5500	NM_004258	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
166042	chr3	108602271	108603030	+	0	NA	intron (NM_014648, intron 1 of 32)	intron (NM_014648, intron 1 of 32)	12928	NM_014648	9666		NM_014648	ENSG00000198919	DZIP3	PPP1R66|UURF2|hRUL138	DAZ interacting zinc finger protein 3	protein-coding
54914	chr12	96120771	96121130	+	0	NA	Intergenic	L2|LINE|L2	-73425	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
143688	chr20	32115551	32115850	+	0	NA	intron (NM_001363731, intron 1 of 17)	MIR3|SINE|MIR	5972	NM_001363731	9777		NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
140993	chr2	238069001	238069780	+	0	NA	non-coding (NR_037904, exon 11 of 19)	non-coding (NR_037904, exon 11 of 19)	8389	NM_016510	51540		NM_016510	ENSG00000132330	SCLY	SCL|hSCL	selenocysteine lyase	protein-coding
67798	chr14	73765351	73765650	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-5197	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
123853	chr19	55247671	55248150	+	0	NA	intron (NM_014931, intron 1 of 23)	intron (NM_014931, intron 1 of 23)	-2660	NR_106861	102466739		NR_106861	ENSG00000278264	MIR6803	hsa-mir-6803	microRNA 6803	ncRNA
210659	chr7	100489271	100489430	+	0	NA	exon (NM_173564, exon 4 of 7)	exon (NM_173564, exon 4 of 7)	5423	NM_173564	222950		NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
63253	chr13	113945371	113945800	+	0	NA	Intergenic	(AGAA)n|Simple_repeat|Simple_repeat	-16594	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
162203	chr3	47011151	47011980	+	0	NA	promoter-TSS (NR_024046)	promoter-TSS (NR_024046)	23	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
73057	chr15	40899501	40900130	+	0	NA	exon (NM_020857, exon 4 of 5)	exon (NM_020857, exon 4 of 5)	5365	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
68680	chr14	90331201	90332630	+	0	NA	promoter-TSS (NM_017970)	promoter-TSS (NM_017970)	26	NM_017970	55051		NM_017970	ENSG00000119720	NRDE2	C14orf102	NRDE-2, necessary for RNA interference, domain containing	protein-coding
170786	chr3	188972421	188972680	+	0	NA	Intergenic	Intergenic	-24911	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
4870	chr1	23766501	23766700	+	0	NA	intron (NR_038280, intron 3 of 3)	AluJb|SINE|Alu	11697	NR_038280	100506963		NR_038280	ENSG00000236810	ELOA-AS1	TCEB3-AS1	ELOA antisense RNA 1	ncRNA
77938	chr15	89330771	89331030	+	0	NA	intron (NM_002693, intron 2 of 22)	intron (NM_002693, intron 2 of 22)	3924	NM_001126131	5428		NM_002693	ENSG00000140521	POLG	MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE	DNA polymerase gamma, catalytic subunit	protein-coding
87503	chr16	71817901	71818900	+	0	NA	Intergenic	AluSx3|SINE|Alu	-9566	NM_001128	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
11638	chr1	91758221	91758480	+	0	NA	intron (NR_036634, intron 5 of 17)	intron (NR_036634, intron 5 of 17)	127801	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
212905	chr7	130894421	130895700	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-17521	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
202882	chr6	159974801	159975200	+	0	NA	intron (NM_000876, intron 1 of 47)	MER21A|LTR|ERVL	5918	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
226399	chr9	70408701	70408900	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	5857	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
228881	chr9	112546321	112546650	+	0	NA	intron (NM_133465, intron 1 of 3)	AluSz6|SINE|Alu	-58841	NM_001350649	100133204		NM_001350649		HSDL2-AS1	C9orf147	HSDL2 antisense RNA 1	ncRNA
166924	chr3	125054501	125055100	+	0	NA	intron (NM_020733, intron 1 of 16)	MIRc|SINE|MIR	1197	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
100248	chr17	59367701	59367930	+	0	NA	intron (NM_001005404, intron 2 of 4)	MamSINE1|SINE|tRNA-RTE	1732	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
138255	chr2	203243371	203243880	+	0	NA	intron (NM_001371705, intron 1 of 9)	AluSx1|SINE|Alu	4284	NM_001371698	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
154673	chr22	36360901	36361530	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	26752	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
77289	chr15	82286941	82287730	+	0	NA	Intergenic	L1ME1|LINE|L1	-5948	NR_045529	390660		NR_045529	ENSG00000274376	ADAMTS7P1	ADAMTS7P2	ADAMTS7 pseudogene 1	pseudo
92170	chr17	7710251	7710350	+	0	NA	3' UTR (NM_001406, exon 5 of 5)	3' UTR (NM_001406, exon 5 of 5)	5098	NM_001406	1949		NM_001406	ENSG00000108947	EFNB3	EFL6|EPLG8|LERK8	ephrin B3	protein-coding
164886	chr3	71090371	71091280	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-25901	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
1547	chr1	3477871	3478230	+	0	NA	intron (NM_014448, intron 11 of 14)	intron (NM_014448, intron 11 of 14)	23385	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
43409	chr11	77188271	77188630	+	0	NA	intron (NM_001369365, intron 28 of 49)	Charlie18a|DNA|hAT-Charlie	60204	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
221536	chr8	124709471	124710230	+	0	NA	intron (NM_001363300, intron 1 of 12)	intron (NM_001363300, intron 1 of 12)	18623	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
212655	chr7	129525421	129526250	+	0	NA	Intergenic	Intergenic	23304	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
113839	chr19	10631051	10631150	+	0	NA	exon (NM_001145056, exon 5 of 22)	exon (NM_001145056, exon 5 of 22)	5547	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
220633	chr8	100943921	100945050	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	6086	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
98062	chr17	45467621	45467880	+	0	NA	intron (NR_027782, intron 4 of 10)	AluSx1|SINE|Alu	7685	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
74363	chr15	58726671	58727250	+	0	NA	intron (NM_001320570, intron 1 of 14)	G-rich|Low_complexity|Low_complexity	22747	NM_001110	102		NM_001110	ENSG00000137845	ADAM10	AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz	ADAM metallopeptidase domain 10	protein-coding
135482	chr2	161423151	161424600	+	0	NA	exon (NM_006593, exon 6 of 6)	exon (NM_006593, exon 6 of 6)	7578	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
221811	chr8	127994871	127995230	+	0	NA	intron (NR_003367, intron 5 of 8)	MLT2B1|LTR|ERVL	-13848	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
47427	chr12	3130121	3130380	+	0	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	52871	NM_006675	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
209392	chr7	76319621	76319880	+	0	NA	Intergenic	AluSx3|SINE|Alu	17077	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
217732	chr8	30654651	30655180	+	0	NA	intron (NM_002095, intron 1 of 7)	L3|LINE|CR1	2703	NM_001348353	2961		NM_002095	ENSG00000197265	GTF2E2	FE|TF2E2|TFIIE-B|TTD6	general transcription factor IIE subunit 2	protein-coding
97186	chr17	42679501	42680530	+	0	NA	exon (NM_016602, exon 2 of 2)	exon (NM_016602, exon 2 of 2)	1828	NM_016602	2826		NM_016602	ENSG00000184451	CCR10	GPR2	C-C motif chemokine receptor 10	protein-coding
171584	chr3	197024701	197024900	+	0	NA	intron (NM_033316, intron 3 of 6)	MamGypLTR1c|LTR|Gypsy	5017	NM_033316	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
52963	chr12	57468471	57469000	+	0	NA	intron (NM_001160045, intron 8 of 9)	AluJr|SINE|Alu	8584	NM_001167609	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
181741	chr5	50704101	50704600	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	36936	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
75175	chr15	64700851	64701550	+	0	NA	intron (NM_002537, intron 1 of 4)	intron (NM_002537, intron 1 of 4)	2081	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
222864	chr8	142726471	142728180	+	0	NA	promoter-TSS (NR_038925)	promoter-TSS (NR_038925)	102	NR_156431	51337		NM_016647	ENSG00000130193	THEM6	C8orf55|DSCD75	thioesterase superfamily member 6	protein-coding
198363	chr6	105424001	105424600	+	0	NA	Intergenic	Intergenic	-21218	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
141273	chr2	240024771	240026180	+	0	NA	promoter-TSS (NR_136158)	promoter-TSS (NR_136158)	-73	NM_001322019	4705		NM_004544	ENSG00000130414	NDUFA10	CI-42KD|CI-42k|MC1DN22	NADH:ubiquinone oxidoreductase subunit A10	protein-coding
156476	chr22	41263451	41263750	+	0	NA	intron (NM_001278651, intron 6 of 16)	AluSq|SINE|Alu	-10550	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
55684	chr12	107486451	107487150	+	0	NA	intron (NM_001347944, intron 1 of 14)	MIR|SINE|MIR	-94074	NM_001017523	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
149248	chr21	25733371	25733530	+	0	NA	intron (NM_001003697, intron 1 of 3)	AluY|SINE|Alu	-1522	NM_002040	2551		NM_002040	ENSG00000154727	GABPA	E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07	GA binding protein transcription factor subunit alpha	protein-coding
125872	chr2	24544571	24545330	+	0	NA	intron (NM_001362954, intron 1 of 23)	L1MC3|LINE|L1	-39527	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
94245	chr17	28681651	28682000	+	0	NA	intron (NM_003170, intron 12 of 36)	intron (NM_003170, intron 12 of 36)	19620	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
218423	chr8	47682971	47683130	+	0	NA	intron (NR_148204, intron 11 of 19)	intron (NR_148204, intron 11 of 19)	23386	NM_001352960	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
21570	chr1	206465651	206466480	+	0	NA	Intergenic	L2a|LINE|L2	-4411	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
76961	chr15	78131001	78132450	+	0	NA	promoter-TSS (NM_001271888)	promoter-TSS (NM_001271888)	-190	NR_125435	10518		NM_006383	ENSG00000136425	CIB2	DFNB48|KIP2|USH1J	calcium and integrin binding family member 2	protein-coding
220734	chr8	102107871	102108850	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	15974	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
69075	chr14	92034051	92034350	+	0	NA	intron (NM_004239, intron 1 of 20)	AluSx|SINE|Alu	5859	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
39317	chr11	59053401	59053680	+	0	NA	non-coding (NR_033853, exon 2 of 6)	non-coding (NR_033853, exon 2 of 6)	4912	NR_033853	283194		NR_033853	ENSG00000255240	LOC283194	-	uncharacterized LOC283194	ncRNA
178514	chr4	150884251	150884580	+	0	NA	intron (NM_001367550, intron 17 of 56)	L1M4a1|LINE|L1	130852	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
49389	chr12	22430851	22431580	+	0	NA	Intergenic	L1MEc|LINE|L1	-96501	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
148972	chr21	13895371	13895530	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	38429	NR_146644	110091776		NR_146644		LOC110091776	-	ankyrin repeat domain 18B pseudogene	pseudo
90557	chr17	1507171	1507330	+	0	NA	intron (NM_016532, intron 6 of 11)	intron (NM_016532, intron 6 of 11)	9362	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
99648	chr17	50634521	50635630	+	0	NA	intron (NM_001144070, intron 1 of 11)	CpG	194	NM_003786	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
27182	chr10	28551271	28552130	+	0	NA	intron (NM_100486, intron 3 of 12)	MARNA|DNA|TcMar-Mariner	18582	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
238471	chrX	153337301	153337500	+	0	NA	intron (NM_001080485, intron 2 of 4)	intron (NM_001080485, intron 2 of 4)	1938	NR_162143	113219460		NR_162143		MIR12129	-	microRNA 12129	ncRNA
154774	chr22	36526601	36526800	+	0	NA	intron (NR_156418, intron 1 of 14)	AluSz|SINE|Alu	2466	NM_003753	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
28066	chr10	43296451	43296950	+	0	NA	Intergenic	Intergenic	-29635	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
219558	chr8	78524871	78525230	+	0	NA	intron (NM_181839, intron 1 of 2)	intron (NM_181839, intron 1 of 2)	8710	NM_181839	5569		NM_006823	ENSG00000171033	PKIA	PRKACN1	cAMP-dependent protein kinase inhibitor alpha	protein-coding
62815	chr13	109758801	109759650	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	27358	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
165480	chr3	99815971	99816330	+	0	NA	TTS (NR_110821)	TTS (NR_110821)	-1712	NM_032359	84319		NM_032359	ENSG00000184220	CMSS1	C3orf26	cms1 ribosomal small subunit homolog	protein-coding
181412	chr5	40716971	40717130	+	0	NA	intron (NM_012382, intron 4 of 4)	AluSq2|SINE|Alu	37135	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
57601	chr12	122457351	122458230	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-35121	NM_198240	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
206220	chr7	28662071	28662630	+	0	NA	intron (NM_182899, intron 4 of 9)	intron (NM_182899, intron 4 of 9)	-23783	NM_001011666	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
49187	chr12	15545121	15545380	+	0	NA	intron (NM_030667, intron 12 of 26)	intron (NM_030667, intron 12 of 26)	-1361	NM_030671	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
205641	chr7	22698251	22698850	+	0	NA	Intergenic	Intergenic	-28650	NM_001318095	3569		NM_000600	ENSG00000136244	IL6	BSF-2|BSF2|CDF|HGF|HSF|IFN-beta-2|IFNB2|IL-6	interleukin 6	protein-coding
179790	chr5	354251	354630	+	0	NA	intron (NR_165159, intron 5 of 13)	intron (NR_165159, intron 5 of 13)	31830	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
45076	chr11	117069151	117069450	+	0	NA	intron (NM_001281748, intron 1 of 24)	L1MC5|LINE|L1	29128	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
39119	chr11	48105971	48106580	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	9493	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
213209	chr7	132859351	132859450	+	0	NA	intron (NM_017812, intron 5 of 7)	intron (NM_017812, intron 5 of 7)	100430	NR_134332	100506937		NR_134332	ENSG00000225881	LOC100506937	-	uncharacterized LOC100506937	ncRNA
99426	chr17	50111721	50112480	+	0	NA	TTS (NM_002611)	TTS (NM_002611)	16405	NM_001199899	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
44049	chr11	95196571	95197200	+	0	NA	intron (NM_001271594, intron 1 of 8)	intron (NM_001271594, intron 1 of 8)	-33301	NR_110295	100129203		NR_110295	ENSG00000245552	LOC100129203	-	uncharacterized LOC100129203	ncRNA
176593	chr4	98927931	98930950	+	0	NA	promoter-TSS (NM_001130678)	promoter-TSS (NM_001130678)	-307	NM_001130678	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
179461	chr4	184452251	184452550	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	22150	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
127468	chr2	42221071	42221650	+	0	NA	intron (NM_019063, intron 1 of 22)	Tigger1|DNA|TcMar-Tigger	-51129	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
43670	chr11	85759121	85759850	+	0	NA	intron (NM_032943, intron 1 of 18)	MIRb|SINE|MIR	-1416	NM_001162953	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
195591	chr6	37546001	37546400	+	0	NA	Intergenic	Intergenic	9222	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
23143	chr1	226715801	226716330	+	0	NA	intron (NM_002221, intron 2 of 7)	AluSx1|SINE|Alu	23110	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
185255	chr5	123517021	123517280	+	0	NA	intron (NM_001364146, intron 1 of 10)	Tigger13a|DNA|TcMar-Tigger	4973	NM_001270574	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
22727	chr1	224203871	224204030	+	0	NA	Intergenic	Intergenic	9329	NR_110669	101927143		NR_110669	ENSG00000232628	LOC101927143	-	uncharacterized LOC101927143	ncRNA
151325	chr21	45592221	45593580	+	0	NA	promoter-TSS (NR_146912)	promoter-TSS (NR_146912)	-754	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
45283	chr11	118044851	118045600	+	0	NA	intron (NM_001354434, intron 2 of 5)	intron (NM_001354434, intron 2 of 5)	-31787	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
143293	chr20	25291871	25292430	+	0	NA	intron (NM_002862, intron 16 of 19)	intron (NM_002862, intron 16 of 19)	44065	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
83712	chr16	28499301	28499700	+	0	NA	TTS (NM_018690)	TTS (NM_018690)	4857	NM_018690	55911		NM_018690	ENSG00000184730	APOBR	APOB100R|APOB48R	apolipoprotein B receptor	protein-coding
16935	chr1	155907921	155908400	+	0	NA	intron (NM_001256821, intron 3 of 5)	intron (NM_001256821, intron 3 of 5)	2758	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
188482	chr5	154769071	154769230	+	0	NA	intron (NM_001367719, intron 1 of 18)	L1MB8|LINE|L1	11996	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
103589	chr17	78709421	78709900	+	0	NA	exon (NM_001365037, exon 2 of 14)	exon (NM_001365037, exon 2 of 14)	7372	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
228387	chr9	99123951	99124250	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	18987	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233587	chrX	312071	313050	+	0	NA	intron (NM_012227, intron 6 of 9)	intron (NM_012227, intron 6 of 9)	6259	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
195417	chr6	36885351	36886300	+	0	NA	promoter-TSS (NM_001286637)	promoter-TSS (NM_001286637)	-127	NM_001286637	221477		NM_152734	ENSG00000198663	C6orf89	BRAP|PS1TP5TP1	chromosome 6 open reading frame 89	protein-coding
16457	chr1	154588401	154588600	+	0	NA	intron (NM_001111, intron 10 of 14)	intron (NM_001111, intron 10 of 14)	17753	NM_001193495	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
173132	chr4	6638421	6638680	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-1541	NM_033296	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
130936	chr2	87497121	87497450	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	27335	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
29422	chr10	70255051	70255800	+	0	NA	exon (NM_022146, exon 4 of 4)	exon (NM_022146, exon 4 of 4)	-21996	NM_021129	5464		NM_021129	ENSG00000180817	PPA1	HEL-S-66p|IOPPP|PP|PP1|SID6-8061	inorganic pyrophosphatase 1	protein-coding
40949	chr11	65324671	65324830	+	0	NA	Intergenic	AluSx3|SINE|Alu	-9102	NM_006268	5977		NM_006268	ENSG00000133884	DPF2	CSS7|REQ|SMARCG2|UBID4|ubi-d4	double PHD fingers 2	protein-coding
170264	chr3	184262401	184263150	+	0	NA	intron (NM_014693, intron 2 of 18)	CpG-20515	-1222	NM_033259	94032		NM_033259	ENSG00000163888	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin dependent protein kinase II inhibitor 2	protein-coding
71204	chr14	105074221	105074500	+	0	NA	Intergenic	Intergenic	-8930	NM_013345	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
128030	chr2	47300821	47301080	+	0	NA	intron (NR_110207, intron 1 of 2)	LTR51|LTR|ERV1	-34365	NR_001568	618		NR_001568	ENSG00000236824	BCYRN1	BC200|BC200a|LINC00004|NCRNA00004	brain cytoplasmic RNA 1	ncRNA
103660	chr17	78777821	78779000	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSx1|SINE|Alu	3798	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
212532	chr7	128840051	128840350	+	0	NA	intron (NM_001458, intron 9 of 47)	intron (NM_001458, intron 9 of 47)	9794	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
221317	chr8	123040171	123040330	+	0	NA	intron (NM_024295, intron 1 of 7)	L2a|LINE|L2	2052	NM_024295	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
203166	chr6	167091971	167092130	+	0	NA	Intergenic	Intergenic	-19757	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
66125	chr14	60157251	60157780	+	0	NA	intron (NM_001322280, intron 1 of 6)	MIRb|SINE|MIR	7883	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
192819	chr6	27019001	27019200	+	0	NA	TTS (NR_026776)	TTS (NR_026776)	1206	NR_026776	100270746		NR_026776		LARRPM	-	LINC00240 antisense RNA regulating promoter methylation	ncRNA
214378	chr7	149741671	149741830	+	0	NA	Intergenic	Intergenic	26739	NM_032534	84626		NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
150058	chr21	37388351	37388800	+	0	NA	intron (NM_001347723, intron 1 of 10)	L1MC5|LINE|L1	21018	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
118350	chr19	35641251	35642130	+	0	NA	promoter-TSS (NM_001304549)	promoter-TSS (NM_001304549)	-55	NM_001300974	2116		NM_014209	ENSG00000105672	ETV2	ER71|ETSRP71	ETS variant transcription factor 2	protein-coding
6339	chr1	27721951	27722430	+	0	NA	Intergenic	MIR|SINE|MIR	-3771	NM_001143914	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
202750	chr6	159033301	159034330	+	0	NA	TTS (NM_001278733)	TTS (NM_001278733)	8538	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
56976	chr12	120544821	120545280	+	0	NA	intron (NM_001330474, intron 1 of 16)	intron (NM_001330474, intron 1 of 16)	10694	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
46707	chr11	128832101	128832300	+	0	NA	Intergenic	Intergenic	10269	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
231967	chr9	133155721	133155980	+	0	NA	intron (NM_001288573, intron 5 of 6)	intron (NM_001288573, intron 5 of 6)	-6640	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
59958	chr13	31896521	31896780	+	0	NA	intron (NR_027062, intron 1 of 3)	intron (NR_027062, intron 1 of 3)	49867	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
221084	chr8	117330001	117330400	+	0	NA	Intergenic	Intergenic	-190513	NM_001282986	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
101969	chr17	74735301	74735800	+	0	NA	intron (NM_175738, intron 2 of 8)	intron (NM_175738, intron 2 of 8)	-1010	NM_001330471	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
224604	chr9	20383821	20384080	+	0	NA	intron (NM_001286691, intron 5 of 10)	Tigger19b|DNA|TcMar-Tigger	27288	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
214651	chr7	150778501	150778930	+	0	NA	Intergenic	Intergenic	21649	NM_001101312	28959		NM_014020	ENSG00000106565	TMEM176B	LR8|MS4B2	transmembrane protein 176B	protein-coding
127837	chr2	45008721	45009080	+	0	NA	exon (NM_016932, exon 1 of 2)	exon (NM_016932, exon 1 of 2)	552	NM_016932	10736		NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
168187	chr3	140972871	140973100	+	0	NA	intron (NM_018155, intron 5 of 6)	intron (NM_018155, intron 5 of 6)	31149	NM_001104647	55186		NM_018155	ENSG00000114120	SLC25A36	HHF8|PNC2	solute carrier family 25 member 36	protein-coding
63773	chr14	21257471	21257850	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluJr4|SINE|Alu	11782	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
38522	chr11	45894371	45894530	+	0	NA	intron (NM_005456, intron 1 of 11)	MIRc|SINE|MIR	8799	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
203198	chr6	167699371	167699730	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-15763	NR_117092	441178		NM_001025489	ENSG00000203688	LINC02487	-	long intergenic non-protein coding RNA 2487	ncRNA
190815	chr6	1396201	1396400	+	0	NA	TTS (NM_001452)	TTS (NM_001452)	-5889	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
4520	chr1	21791821	21792080	+	0	NA	Intergenic	AluY|SINE|Alu	-8751	NM_001330394	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
233806	chrX	1460671	1461800	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	-7473	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
13279	chr1	112880951	112881430	+	0	NA	promoter-TSS (NR_162120)	promoter-TSS (NR_162120)	-860	NR_162120	113218506		NR_162120		MIR11399	-	microRNA 11399	ncRNA
161117	chr3	38257451	38257850	+	0	NA	Intergenic	L1MC4a|LINE|L1	-8162	NM_004256	9390		NM_004256	ENSG00000172940	SLC22A13	OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3	solute carrier family 22 member 13	protein-coding
235145	chrX	41098801	41099180	+	0	NA	intron (NM_001039590, intron 1 of 44)	AluJb|SINE|Alu	13545	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
70862	chr14	103712971	103713130	+	0	NA	intron (NM_001371232, intron 1 of 9)	MER31A|LTR|ERV1	2401	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
37741	chr11	31811971	31812330	+	0	NA	promoter-TSS (NM_001258463)	promoter-TSS (NM_001258463)	53	NM_001368888	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
156449	chr22	41244801	41245000	+	0	NA	3' UTR (NM_001317930, exon 16 of 16)	3' UTR (NM_001317930, exon 16 of 16)	-3969	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
83224	chr16	23834021	23834730	+	0	NA	Intergenic	Intergenic	-1608	NM_212535	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
228014	chr9	95726551	95727150	+	0	NA	Intergenic	Intergenic	-148841	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
214901	chr7	151441521	151443030	+	0	NA	Intergenic	MER34|LTR|ERV1	-1462	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
224954	chr9	33045551	33045950	+	0	NA	3' UTR (NM_018225, exon 12 of 12)	3' UTR (NM_018225, exon 12 of 12)	20477	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
35135	chr11	710571	711530	+	0	NA	intron (NM_022772, intron 4 of 20)	intron (NM_022772, intron 4 of 20)	-3967	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
69493	chr14	95515891	95517630	+	0	NA	promoter-TSS (NM_152592)	promoter-TSS (NM_152592)	-110	NM_001384284	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
18692	chr1	167428221	167428750	+	0	NA	Intergenic	Intergenic	90044	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
201062	chr6	142551221	142551680	+	0	NA	intron (NR_027312, intron 1 of 2)	intron (NR_027312, intron 1 of 2)	86386	NR_027311	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
224703	chr9	21393201	21393400	+	0	NA	Intergenic	Intergenic	-7902	NM_000605	3440		NM_000605	ENSG00000188379	IFNA2	IFN-alpha-2|IFN-alphaA|IFNA|IFNA2B|leIF A	interferon alpha 2	protein-coding
135995	chr2	172270201	172270600	+	0	NA	Intergenic	L1PA6|LINE|L1	-156936	NM_001316306	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
186828	chr5	139402221	139402850	+	0	NA	intron (NM_194296, intron 2 of 5)	AluSx1|SINE|Alu	1554	NM_194296	202051		NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
211250	chr7	102664071	102664230	+	0	NA	intron (NM_032959, intron 4 of 8)	MER21C|LTR|ERVL	7585	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
43521	chr11	81963071	81963480	+	0	NA	intron (NR_120571, intron 6 of 7)	intron (NR_120571, intron 6 of 7)	-72439	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
51343	chr12	51392601	51393130	+	0	NA	intron (NM_001258401, intron 1 of 24)	intron (NM_001258401, intron 1 of 24)	-1459	NM_007210	11226		NM_007210	ENSG00000139629	GALNT6	GALNAC-T6|GalNAcT6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding
103948	chr17	79874201	79874700	+	0	NA	Intergenic	L1MD2|LINE|L1	-35010	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
136040	chr2	172492801	172493000	+	0	NA	intron (NM_001316306, intron 23 of 25)	intron (NM_001316306, intron 23 of 25)	-26878	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
10384	chr1	65001201	65001700	+	0	NA	intron (NR_119383, intron 1 of 6)	intron (NR_119383, intron 1 of 6)	1026	NR_119383	101927084		NR_119383	ENSG00000226891	LINC01359	-	long intergenic non-protein coding RNA 1359	ncRNA
128217	chr2	54039771	54040130	+	0	NA	intron (NM_001320587, intron 2 of 5)	AluJo|SINE|Alu	68837	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
198110	chr6	90298971	90299600	+	0	NA	Intergenic	Intergenic	-2377	NM_001170794	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
24478	chr1	244100701	244101050	+	0	NA	Intergenic	Intergenic	47670	NM_006352	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
22915	chr1	225900601	225900800	+	0	NA	Intergenic	Intergenic	-11554	NM_020997	10637		NM_020997	ENSG00000243709	LEFTY1	LEFTB|LEFTYB	left-right determination factor 1	protein-coding
36549	chr11	6611671	6613230	+	0	NA	promoter-TSS (NM_006284)	promoter-TSS (NM_006284)	-234	NM_006284	6881		NM_006284	ENSG00000166337	TAF10	TAF2A|TAF2H|TAFII30	TATA-box binding protein associated factor 10	protein-coding
97208	chr17	42759001	42759400	+	0	NA	intron (NR_024461, intron 3 of 3)	MIR1_Amn|SINE|MIR	-2027	NM_005854	10266		NM_005854	ENSG00000131477	RAMP2	-	receptor activity modifying protein 2	protein-coding
127496	chr2	42267351	42268100	+	0	NA	intron (NM_019063, intron 6 of 22)	intron (NM_019063, intron 6 of 22)	92313	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
191180	chr6	5085701	5085900	+	0	NA	exon (NM_001145115, exon 1 of 1)	exon (NM_001145115, exon 1 of 1)	459	NM_001145115	648791		NM_001145115	ENSG00000219607	PPP1R3G	-	protein phosphatase 1 regulatory subunit 3G	protein-coding
37978	chr11	34936751	34937080	+	0	NA	intron (NM_003477, intron 2 of 10)	AluSz|SINE|Alu	-4922	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
48056	chr12	7073501	7073700	+	0	NA	Intergenic	Intergenic	12882	NM_001346850	716		NM_001734	ENSG00000182326	C1S	EDSPD2	complement C1s	protein-coding
121287	chr19	46722571	46722730	+	0	NA	intron (NM_001039877, intron 14 of 17)	intron (NM_001039877, intron 14 of 17)	-5523	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
171036	chr3	195183251	195183750	+	0	NA	intron (NM_001308069, intron 2 of 3)	THE1D|LTR|ERVL-MaLR	35629	NR_102711	101410543		NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
215777	chr8	2130901	2131750	+	0	NA	intron (NM_003970, intron 32 of 36).2	MIRb|SINE|MIR	54736	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
98845	chr17	48439701	48440570	+	0	NA	Intergenic	Intergenic	-4698	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
51990	chr12	53960171	53960330	+	0	NA	Intergenic	Intergenic	5347	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
128766	chr2	62209531	62210100	+	0	NA	intron (NM_006577, intron 1 of 1)	intron (NM_006577, intron 1 of 1)	3989	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
56179	chr12	111427621	111427880	+	0	NA	intron (NM_005475, intron 2 of 7)	MIRc|SINE|MIR	-7112	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
210754	chr7	100682201	100682530	+	0	NA	exon (NM_001375766, exon 25 of 28)	exon (NM_001375766, exon 25 of 28)	8625	NM_005273	2783		NM_005273	ENSG00000172354	GNB2	HG2C1|SSS4|SSS4; NEDHYDF	G protein subunit beta 2	protein-coding
220701	chr8	101652371	101652530	+	0	NA	intron (NM_024915, intron 14 of 15)	(GT)n|Simple_repeat|Simple_repeat	138519	NM_032041	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
197111	chr6	57175451	57175850	+	0	NA	intron (NM_004282, intron 1 of 2)	MER21A|LTR|ERVL	3324	NM_004282	9532		NM_004282	ENSG00000112208	BAG2	BAG-2|dJ417I1.2	BAG cochaperone 2	protein-coding
92081	chr17	7548151	7550500	+	0	NA	intron (NM_172089, intron 1 of 10)	intron (NM_172089, intron 1 of 10)	267	NR_037146	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
109999	chr19	1423701	1423900	+	0	NA	intron (NM_001352035, intron 6 of 10)	CpG	-14596	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
5535	chr1	25814051	25814950	+	0	NA	intron (NM_206926, intron 11 of 11)	intron (NM_206926, intron 11 of 11)	-5406	NM_001099627	56181		NM_019557	ENSG00000117640	MTFR1L	FAM54B|HYST1888|MST116|MSTP116	mitochondrial fission regulator 1 like	protein-coding
25210	chr10	5711671	5712200	+	0	NA	intron (NM_017782, intron 1 of 20)	intron (NM_017782, intron 1 of 20)	27097	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
214162	chr7	144786571	144786800	+	0	NA	intron (NR_146934, intron 1 of 6)	MER34A1|LTR|ERV1	-47787	NM_001350884	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
178806	chr4	153504171	153504330	+	0	NA	intron (NM_015196, intron 3 of 34)	AluY|SINE|Alu	37890	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
51965	chr12	53927571	53928480	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-10806	NM_017410	3229		NM_017410	ENSG00000123364	HOXC13	ECTD9|HOX3|HOX3G	homeobox C13	protein-coding
163532	chr3	51637951	51638130	+	0	NA	intron (NM_001322256, intron 10 of 21)	intron (NM_001322256, intron 10 of 21)	-33135	NM_001129884	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
7169	chr1	32252601	32252830	+	0	NA	intron (NM_005356, intron 1 of 12)	intron (NM_005356, intron 1 of 12)	1450	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
58793	chr12	132766751	132767050	+	0	NA	Intergenic	Intergenic	-5068	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
182972	chr5	71475621	71476230	+	0	NA	intron (NM_018429, intron 7 of 38).3	intron (NM_018429, intron 7 of 38).3	20274	NM_018429	55814		NM_018429	ENSG00000145734	BDP1	DFNB112|HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
119775	chr19	41306851	41307980	+	0	NA	3' UTR (NM_007040, exon 15 of 15)	3' UTR (NM_007040, exon 15 of 15)	-2757	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
9901	chr1	54378521	54379180	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	27544	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
1799	chr1	6183421	6183800	+	0	NA	Intergenic	Intergenic	-3289	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
198063	chr6	90222221	90222680	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	74393	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
17417	chr1	156649401	156649600	+	0	NA	intron (NM_198427, intron 6 of 7)	AluJb|SINE|Alu	7383	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
126992	chr2	36784971	36785530	+	0	NA	intron (NM_053276, intron 11 of 15)	MER5A1|DNA|hAT-Charlie	88543	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
100512	chr17	62064701	62065400	+	0	NA	intron (NM_005121, intron 1 of 29)	CpG	228	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
117678	chr19	24092371	24092530	+	0	NA	intron (NM_001278662, intron 2 of 4)	AluSq|SINE|Alu	5263	NM_203282	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
209092	chr7	74868751	74869050	+	0	NA	Intergenic	AluSc|SINE|Alu	-17324	NM_173537	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
226142	chr9	63442551	63443430	+	0	NA	Intergenic	Intergenic	108452	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
211556	chr7	105535101	105535500	+	0	NA	intron (NR_144478, intron 2 of 13)	AluSx4|SINE|Alu	3099	NM_021930	60561		NM_021930	ENSG00000135249	RINT1	ILFS3|RINT-1	RAD50 interactor 1	protein-coding
210653	chr7	100478701	100481180	+	0	NA	promoter-TSS (NR_130119)	promoter-TSS (NR_130119)	-726	NR_130119	81628		NM_030935	ENSG00000166925	TSC22D4	SPACDR|THG-1|THG1|TILZ2	TSC22 domain family member 4	protein-coding
123859	chr19	55253651	55254620	+	0	NA	intron (NM_014931, intron 1 of 23)	intron (NM_014931, intron 1 of 23)	4882	NM_014931	22870		NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding
43439	chr11	77776501	77776780	+	0	NA	intron (NM_016578, intron 1 of 15)	intron (NM_016578, intron 1 of 15)	44194	NM_016578	51773		NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
140999	chr2	238104771	238104930	+	0	NA	intron (NM_194312, intron 3 of 8)	intron (NM_194312, intron 3 of 8)	4510	NM_194312	339768		NM_194312	ENSG00000144488	ESPNL	-	espin like	protein-coding
222635	chr8	141120971	141121330	+	0	NA	Intergenic	Intergenic	-7439	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
155937	chr22	39665971	39666330	+	0	NA	intron (NM_001003406, intron 22 of 35)	MIR|SINE|MIR	95397	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
227752	chr9	93094801	93097550	+	0	NA	promoter-TSS (NM_001318010)	promoter-TSS (NM_001318010)	-42	NM_032310	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
162209	chr3	47015821	47016080	+	0	NA	TTS (NM_014159)	TTS (NM_014159)	4408	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
82440	chr16	16330401	16330830	+	0	NA	intron (NR_036447, intron 20 of 30)	AluY|SINE|Alu	1310	NR_107060	102465908		NR_107060	ENSG00000277698	MIR6770-2	hsa-mir-6770-2	microRNA 6770-2	ncRNA
139147	chr2	219059001	219059200	+	0	NA	promoter-TSS (NR_036081)	promoter-TSS (NR_036081)	-350	NR_036081	100422957		NR_036081	ENSG00000264755	MIR3131	mir-3131	microRNA 3131	ncRNA
209149	chr7	75156521	75158330	+	0	NA	intron (NR_003187, intron 9 of 10)	CpG-26038	14573	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
118444	chr19	35860951	35861850	+	0	NA	intron (NM_032123, intron 9 of 15)	intron (NM_032123, intron 9 of 15)	4489	NM_001329530	84063		NM_032123	ENSG00000126259	KIRREL2	FILTRIN|NEPH3|NLG1	kirre like nephrin family adhesion molecule 2	protein-coding
179974	chr5	855751	857330	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5554	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
86046	chr16	57556671	57557030	+	0	NA	intron (NM_153837, intron 1 of 11)	L1ME1|LINE|L1	14207	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
166193	chr3	111716771	111716930	+	0	NA	intron (NM_153268, intron 3 of 3)	MLT1B|LTR|ERVL-MaLR	-15646	NM_001134437	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
11608	chr1	91699371	91699930	+	0	NA	intron (NR_036634, intron 15 of 17)	MIRc|SINE|MIR	186501	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
226099	chr9	62836071	62836530	+	0	NA	non-coding (NR_135128, exon 1 of 1)	non-coding (NR_135128, exon 1 of 1)	2046	NR_135128	100132249		NR_135128		LOC100132249	-	uncharacterized LOC100132249	ncRNA
77908	chr15	89205901	89206100	+	0	NA	Intergenic	AluSx|SINE|Alu	15579	NM_000326	6017		NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
210903	chr7	101182271	101183030	+	0	NA	Intergenic	Intergenic	-2357	NM_198571	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
87533	chr16	71903571	71903980	+	0	NA	intron (NM_001270979, intron 1 of 5)	L1MEf|LINE|L1	8244	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
149512	chr21	32712101	32712830	+	0	NA	intron (NM_203446, intron 2 of 32)	intron (NM_203446, intron 2 of 32)	15456	NM_001160306	8867		NM_003895	ENSG00000159082	SYNJ1	DEE53|EIEE53|INPP5G|PARK20	synaptojanin 1	protein-coding
4873	chr1	23771921	23772730	+	0	NA	non-coding (NR_038280, exon 2 of 4)	non-coding (NR_038280, exon 2 of 4)	5972	NR_038280	100506963		NR_038280	ENSG00000236810	ELOA-AS1	TCEB3-AS1	ELOA antisense RNA 1	ncRNA
121800	chr19	47911871	47912030	+	0	NA	Intergenic	AluSp|SINE|Alu	-1101	NR_024220	100170225		NR_024220		SNAR-C1	-	small NF90 (ILF3) associated RNA C1	snRNA
60266	chr13	40603871	40604650	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	62381	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
140124	chr2	231528301	231529000	+	0	NA	exon (NM_006056, exon 2 of 3)	exon (NM_006056, exon 2 of 3)	1795	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
154679	chr22	36367601	36367830	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	20252	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
166342	chr3	112970571	112970730	+	0	NA	intron (NM_138939, intron 1 of 3)	UCON107|DNA|hAT-Tag1	4453	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
220639	chr8	100956421	100957280	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-3468	NM_003406	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
113833	chr19	10622171	10622330	+	0	NA	intron (NM_001145056, intron 1 of 21)	L2a|LINE|L2	-3303	NM_001363611	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
206526	chr7	34990971	34991130	+	0	NA	intron (NM_015283, intron 6 of 21)	intron (NM_015283, intron 6 of 21)	46435	NM_001366673	23333		NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like C-mannosyltransferase 1	protein-coding
142995	chr20	20357951	20358250	+	0	NA	intron (NM_015585, intron 26 of 26)	intron (NM_015585, intron 26 of 26)	-10004	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
10492	chr1	66380301	66380700	+	0	NA	Intergenic	L2a|LINE|L2	25965	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
39916	chr11	62519851	62520350	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	25564	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
189054	chr5	170184071	170184330	+	0	NA	Intergenic	Intergenic	14941	NR_108022	100507267		NR_108022		LINC01187	CTB-27N1.1|KIDR	long intergenic non-protein coding RNA 1187	ncRNA
171760	chr3	198173021	198174480	+	0	NA	intron (NR_146164, intron 4 of 17)	(AGGGTT)n|Simple_repeat|Simple_repeat	20544	NR_146164	728262		NM_001145248	ENSG00000290937	FAM157A	GTF2IP18	family with sequence similarity 157 member A	ncRNA
160205	chr3	23888621	23888880	+	0	NA	intron (NM_003341, intron 4 of 5)	intron (NM_003341, intron 4 of 5)	-27795	NM_001253379	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
44221	chr11	96335621	96335880	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-5688	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
104828	chr17	81817671	81818630	+	0	NA	Intergenic	L1MC5|LINE|L1	14000	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
171491	chr3	196570351	196570650	+	0	NA	intron (NM_001105573, intron 1 of 2)	AluSp|SINE|Alu	-1826	NM_001345913	348793		NM_182627	ENSG00000185798	WDR53	-	WD repeat domain 53	protein-coding
230328	chr9	127978401	127978600	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	2489	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
30124	chr10	74023171	74023730	+	0	NA	intron (NM_014000, intron 1 of 21)	Tigger3a|DNA|TcMar-Tigger	25334	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
124265	chr19	57746501	57747630	+	0	NA	exon (NM_001348007, exon 1 of 4)	exon (NM_001348007, exon 1 of 4)	250	NR_145327	284309		NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
24344	chr1	239802371	239802530	+	0	NA	intron (NM_001375983, intron 5 of 6)	intron (NM_001375983, intron 5 of 6)	-83331	NR_103776	100506915		NR_103776	ENSG00000233355	CHRM3-AS2	-	CHRM3 antisense RNA 2	ncRNA
117351	chr19	19540241	19540800	+	0	NA	intron (NM_153221, intron 3 of 7)	CpG-14131	2255	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
65441	chr14	51564221	51564480	+	0	NA	intron (NR_047477, intron 2 of 3)	intron (NR_047477, intron 2 of 3)	35602	NR_047477	100874185		NR_047477	ENSG00000258537	FRMD6-AS2	-	FRMD6 antisense RNA 2	ncRNA
61449	chr13	51970401	51970620	+	0	NA	exon (NM_001330578, exon 3 of 20)	exon (NM_001330578, exon 3 of 20)	40940	NM_000053	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
127304	chr2	38757701	38758350	+	0	NA	Intergenic	AluJr|SINE|Alu	-6531	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
226393	chr9	70401451	70401980	+	0	NA	intron (NM_001206, intron 1 of 1)	AluSx1|SINE|Alu	12942	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
179038	chr4	165222271	165222780	+	0	NA	intron (NM_001331023, intron 2 of 12)	intron (NM_001331023, intron 2 of 12)	12506	NM_001161522	11275		NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
127031	chr2	37152071	37152230	+	0	NA	intron (NM_002759, intron 1 of 16)	L1MB5|LINE|L1	-4328	NM_001135652	5610		NM_002759	ENSG00000055332	EIF2AK2	DYT33|EIF2AK1|LEUDEN|PKR|PPP1R83|PRKR	eukaryotic translation initiation factor 2 alpha kinase 2	protein-coding
50807	chr12	49066951	49067730	+	0	NA	intron (NM_144593, intron 2 of 7)	AluSz6|SINE|Alu	2639	NM_144593	121268		NM_144593	ENSG00000167550	RHEBL1	RHEBL1c	RHEB like 1	protein-coding
18811	chr1	167643751	167644050	+	0	NA	TTS (NR_136519)	TTS (NR_136519)	13668	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
59399	chr13	25170601	25171000	+	0	NA	exon (NM_152704, exon 1 of 1)	exon (NM_152704, exon 1 of 1)	1367	NM_199138	219287		NM_152704	ENSG00000165566	AMER2	FAM123A	APC membrane recruitment protein 2	protein-coding
171517	chr3	196642471	196642650	+	0	NA	intron (NM_198565, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	2866	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
234985	chrX	39614501	39614800	+	0	NA	Intergenic	Intergenic	-46566	NR_037501	100500822		NR_037501	ENSG00000263730	MIR3937	-	microRNA 3937	ncRNA
218429	chr8	47736521	47736780	+	0	NA	TTS (NM_001352935)	TTS (NM_001352935)	1514	NM_005195	1052		NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT enhancer binding protein delta	protein-coding
109124	chr18	80148851	80149030	+	0	NA	intron (NR_028340, intron 1 of 2)	intron (NR_028340, intron 1 of 2)	1016	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
128798	chr2	62315551	62315850	+	0	NA	Intergenic	L1MCc|LINE|L1	100179	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
85662	chr16	56263871	56264230	+	0	NA	intron (NM_020988, intron 2 of 8)	intron (NM_020988, intron 2 of 8)	18530	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
172052	chr4	1016651	1017250	+	0	NA	intron (NM_001370296, intron 2 of 6)	intron (NM_001370296, intron 2 of 6)	4486	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
196920	chr6	52391501	52391700	+	0	NA	intron (NM_133367, intron 1 of 1)	MamRTE1|LINE|RTE-BovB	-28742	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
40146	chr11	62848921	62849330	+	0	NA	Intergenic	Intergenic	3910	NR_000008	9304		NR_000008	ENSG00000277194	SNORD22	RNU22|U22	small nucleolar RNA, C/D box 22	snoRNA
14579	chr1	145176551	145176850	+	0	NA	intron (NR_156690, intron 1 of 3)	intron (NR_156690, intron 1 of 3)	-9093	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
31274	chr10	92292111	92292930	+	0	NA	intron (NM_017824, intron 1 of 5)	intron (NM_017824, intron 1 of 5)	1353	NM_017824	54708		NM_017824	ENSG00000198060	MARCHF5	MARCH-V|MARCH5|MITOL|RNF153	membrane associated ring-CH-type finger 5	protein-coding
84524	chr16	30520071	30520300	+	0	NA	intron (NM_002209, intron 30 of 30)	AluJb|SINE|Alu	6381	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
15546	chr1	150539901	150540100	+	0	NA	Intergenic	AluSx|SINE|Alu	-9408	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
178587	chr4	151407371	151408200	+	0	NA	Intergenic	Intergenic	-1391	NM_001348694	729830		NM_001109977	ENSG00000164142	FHIP1A	FAM160A1|FHIP-L	FHF complex subunit HOOK interacting protein 1A	protein-coding
18118	chr1	160712601	160713400	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-1149	NM_001256030	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
231055	chr9	129632621	129633280	+	0	NA	intron (NM_001286799, intron 2 of 3)	intron (NM_001286799, intron 2 of 3)	6506	NM_001286799	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
141279	chr2	240134751	240135050	+	0	NA	intron (NM_001163424, intron 1 of 2)	intron (NM_001163424, intron 1 of 2)	1405	NM_001163424	150678		NM_138336	ENSG00000172428	COPS9	CSNAP|MYEOV2	COP9 signalosome subunit 9	protein-coding
198369	chr6	105457471	105457630	+	0	NA	Intergenic	Intergenic	-54468	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
116245	chr19	17573701	17574500	+	0	NA	intron (NM_024656, intron 6 of 11)	intron (NM_024656, intron 6 of 11)	18451	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
79651	chr16	1192901	1193100	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	32268	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
5837	chr1	26704601	26705300	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	8935	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
45694	chr11	119067001	119068980	+	0	NA	promoter-TSS (NM_001378221).2	promoter-TSS (NM_001378221).2	-23	NM_001378221	55823		NM_021729	ENSG00000160695	VPS11	END1|HLD12|HLD12; DYT32|PEP5|RNF108|hVPS11	VPS11 core subunit of CORVET and HOPS complexes	protein-coding
91904	chr17	7303301	7303500	+	0	NA	Intergenic	Intergenic	-3599	NM_001143760	1984		NM_001970	ENSG00000132507	EIF5A	EIF-5A|EIF5A1|FABAS|eIF-4D|eIF5AI	eukaryotic translation initiation factor 5A	protein-coding
110302	chr19	1838701	1838900	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	9683	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
238132	chrX	136694051	136695020	+	0	NA	intron (NM_004840, intron 9 of 21)	intron (NM_004840, intron 9 of 21)	46377	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
21913	chr1	207830671	207831030	+	0	NA	Intergenic	Intergenic	-8147	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
63416	chr13	114085601	114085800	+	0	NA	intron (NM_001320821, intron 1 of 25).2	CpG	-7745	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171336	chr3	196022271	196022430	+	0	NA	Intergenic	LTR13|LTR|ERVK	-32071	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
70045	chr14	100117021	100117280	+	0	NA	intron (NM_016337, intron 3 of 13)	intron (NM_016337, intron 3 of 13)	7495	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
267	chr1	927151	927800	+	0	NA	intron (NM_001385641, intron 2 of 13)	intron (NM_001385641, intron 2 of 13)	1744	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
109670	chr19	1023201	1023400	+	0	NA	Intergenic	AluJo|SINE|Alu	1778	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
97238	chr17	42929271	42929450	+	0	NA	Intergenic	Intergenic	28561	NM_000151	2538		NM_000151	ENSG00000131482	G6PC1	G6PC|G6PT|G6Pase|GSD1|GSD1a	glucose-6-phosphatase catalytic subunit 1	protein-coding
209176	chr7	75372001	75372200	+	0	NA	Intergenic	AluJr|SINE|Alu	12900	NR_040583	54441		NM_018991	ENSG00000290951	STAG3L1	STAG3L1P|STAG3L2|STAG3L3	STAG3 cohesin complex component like 1 (pseudogene)	pseudo
191705	chr6	13668571	13668980	+	0	NA	intron (NM_005493, intron 2 of 13)	L1MB7|LINE|L1	43060	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
157972	chr22	49821551	49822500	+	0	NA	intron (NR_146335, intron 1 of 13)	intron (NR_146335, intron 1 of 13)	2306	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
1065	chr1	1907371	1907830	+	0	NA	Intergenic	Intergenic	-7660	NM_001330313	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
143299	chr20	25298701	25299130	+	0	NA	TTS (NM_002862)	TTS (NM_002862)	50830	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
55293	chr12	103440321	103440780	+	0	NA	intron (NR_103526, intron 2 of 10)	intron (NR_103526, intron 2 of 10)	55418	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
136875	chr2	188524651	188524830	+	0	NA	intron (NM_001375925, intron 5 of 11)	intron (NM_001375925, intron 5 of 11)	227248	NR_030287	693146		NR_030287	ENSG00000207951	MIR561	MIRN561|hsa-mir-561|mir-561	microRNA 561	ncRNA
96592	chr17	40521601	40522180	+	0	NA	Intergenic	Intergenic	-20267	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
174107	chr4	36191671	36192050	+	0	NA	intron (NR_146894, intron 7 of 32)	intron (NR_146894, intron 7 of 32)	52079	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
190198	chr5	178212151	178213430	+	0	NA	intron (NR_103509, intron 8 of 9)	intron (NR_103509, intron 8 of 9)	8257	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
237470	chrX	119781171	119781530	+	0	NA	Intergenic	AluJb|SINE|Alu	6134	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
136340	chr2	175282321	175282600	+	0	NA	Intergenic	Intergenic	-100750	NM_001002258	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
203815	chr7	1368221	1368480	+	0	NA	Intergenic	Intergenic	91120	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
64553	chr14	24608421	24608780	+	0	NA	intron (NM_033423, intron 1 of 4)	intron (NM_033423, intron 1 of 4)	1085	NM_001270781	2999		NM_033423	ENSG00000100450	GZMH	CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2	granzyme H	protein-coding
28710	chr10	61752071	61752680	+	0	NA	intron (NM_173554, intron 4 of 6)	intron (NM_173554, intron 4 of 6)	89414	NM_173554	219621		NM_173554	ENSG00000183346	CABCOCO1	ARIEL|C10orf107	ciliary associated calcium binding coiled-coil 1	protein-coding
221230	chr8	121642221	121642750	+	0	NA	intron (NR_002835, intron 2 of 3)	intron (NR_002835, intron 2 of 3)	-1045	NM_005328	3037		NM_005328	ENSG00000170961	HAS2	-	hyaluronan synthase 2	protein-coding
59197	chr13	22137071	22137430	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-73035	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
52345	chr12	55037801	55038000	+	0	NA	Intergenic	Intergenic	17926	NM_021191	58158		NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding
31754	chr10	97848351	97848450	+	0	NA	intron (NR_108035, intron 1 of 2)	intron (NR_108035, intron 1 of 2)	1398	NR_108035	100505561		NR_108035	ENSG00000227356	GOLGA7B-DT	LINC00866	GOLGA7B divergent transcript	ncRNA
176599	chr4	98993651	98994200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1796	NM_015143	23173		NM_015143	ENSG00000164024	METAP1	MAP1A|MetAP1A	methionyl aminopeptidase 1	protein-coding
514	chr1	1207921	1210500	+	0	NA	Intergenic	Intergenic	-2618	NM_148901	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
73164	chr15	41479721	41479980	+	0	NA	intron (NM_015138, intron 16 of 17)	AluSq2|SINE|Alu	-14024	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
213203	chr7	132655171	132655730	+	0	NA	intron (NR_046323, intron 1 of 4)	intron (NR_046323, intron 1 of 4)	6656	NR_046323	286023		NM_173682	ENSG00000183470	FLJ40288	-	Putative uncharacterized protein FLJ40288	ncRNA
97989	chr17	45278301	45278500	+	0	NA	intron (NM_003954, intron 6 of 15)	MIR3|SINE|MIR	-16306	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
201362	chr6	144675171	144675610	+	0	NA	intron (NM_001375323, intron 1 of 24)	L1PB1|LINE|L1	92242	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
74945	chr15	63769851	63770150	+	0	NA	intron (NM_003922, intron 2 of 77)	intron (NM_003922, intron 2 of 77)	63948	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
233514	chrM	4601	5700	+	0	NA	Intergenic	Intergenic	2364	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
228314	chr9	98169021	98170080	+	0	NA	intron (NM_052820, intron 1 of 11)	intron (NM_052820, intron 1 of 11)	3342	NM_003389	7464		NM_003389	ENSG00000106789	CORO2A	CLIPINB|IR10|WDR2	coronin 2A	protein-coding
227880	chr9	93860801	93861000	+	0	NA	Intergenic	CpG	41543	NR_036254	100422927		NR_036254	ENSG00000265347	MIR4291	-	microRNA 4291	ncRNA
35105	chr11	644271	644700	+	0	NA	3' UTR (NM_001293634, exon 11 of 11)	3' UTR (NM_001293634, exon 11 of 11)	7216	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
192813	chr6	26678501	26678700	+	0	NA	Intergenic	L2a|LINE|L2	-18848	NM_001242797	79692		NM_024639	ENSG00000181315	ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
195484	chr6	37134601	37135600	+	0	NA	Intergenic	Intergenic	-35052	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
106574	chr18	21745121	21745780	+	0	NA	intron (NM_020774, intron 1 of 20)	MER20|DNA|hAT-Charlie	4658	NM_020774	57534		NM_020774	ENSG00000101752	MIB1	DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6	MIB E3 ubiquitin protein ligase 1	protein-coding
4523	chr1	21818001	21818250	+	0	NA	intron (NM_001013693, intron 3 of 4)	AluSz|SINE|Alu	5860	NM_001013693	401944		NM_001013693	ENSG00000187942	LDLRAD2	-	low density lipoprotein receptor class A domain containing 2	protein-coding
13511	chr1	114750051	114750350	+	0	NA	5' UTR (NM_001007553, exon 2 of 20)	5' UTR (NM_001007553, exon 2 of 20)	7784	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
126485	chr2	28395621	28396250	+	0	NA	intron (NM_005253, intron 1 of 3)	intron (NM_005253, intron 1 of 3)	-1263	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
168636	chr3	149936721	149937080	+	0	NA	intron (NR_165474, intron 9 of 10)	L1M1|LINE|L1	33995	NM_053024	5217		NM_002628	ENSG00000070087	PFN2	D3S1319E|PFL	profilin 2	protein-coding
173471	chr4	8961421	8961730	+	0	NA	Intergenic	Intergenic	-89736	NM_001306142	3166		NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
29084	chr10	67914921	67915180	+	0	NA	intron (NM_001142498, intron 7 of 7)	intron (NM_001142498, intron 7 of 7)	23648	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
140670	chr2	234025401	234026200	+	0	NA	Intergenic	Intergenic	-24902	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
214934	chr7	151631451	151633600	+	0	NA	promoter-TSS (NM_001304531)	promoter-TSS (NM_001304531)	93	NM_001304531	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
103583	chr17	78701771	78701930	+	0	NA	intron (NM_017456, intron 5 of 12)	intron (NM_017456, intron 5 of 12)	15182	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
126618	chr2	28798351	28798850	+	0	NA	intron (NM_206876, intron 8 of 8)	L1MB8|LINE|L1	-12234	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
150671	chr21	43444221	43445130	+	0	NA	Intergenic	CpG	-1926	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
35498	chr11	1523721	1524830	+	0	NA	Intergenic	Intergenic	-37496	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
26596	chr10	22232421	22233300	+	0	NA	Intergenic	AluJo|SINE|Alu	-19212	NR_038921	100130992		NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
221384	chr8	123393951	123394450	+	0	NA	intron (NM_014109, intron 1 of 27)	MIR|SINE|MIR	2247	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
46737	chr11	128963551	128964400	+	0	NA	Intergenic	Intergenic	-20576	NM_022112	63970		NM_022112	ENSG00000120471	TP53AIP1	P53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein-coding
96261	chr17	39851871	39852030	+	0	NA	intron (NM_183231, intron 1 of 5)	intron (NM_183231, intron 1 of 5)	12238	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
189440	chr5	172957001	172957680	+	0	NA	intron (NR_026682, intron 2 of 3)	intron (NR_026682, intron 2 of 3)	-1389	NM_001317981	51121		NM_016093	ENSG00000037241	RPL26L1	RPL26P1	ribosomal protein L26 like 1	protein-coding
117857	chr19	32351271	32352030	+	0	NA	intron (NM_001136156, intron 2 of 6)	intron (NM_001136156, intron 2 of 6)	6040	NM_001136156	22847		NM_014910	ENSG00000168813	ZNF507	Zfp507	zinc finger protein 507	protein-coding
81872	chr16	11669101	11669550	+	0	NA	intron (NM_003498, intron 1 of 1)	(CCCAG)n|Simple_repeat|Simple_repeat	870	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
36362	chr11	3942321	3943650	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	86923	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
224631	chr9	20563001	20563200	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	58838	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
118050	chr19	34260921	34261180	+	0	NA	intron (NM_014686, intron 1 of 13)	intron (NM_014686, intron 1 of 13)	6496	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
222552	chr8	140604671	140605030	+	0	NA	intron (NM_012154, intron 1 of 18)	L1MC5|LINE|L1	30783	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
114910	chr19	13938251	13938350	+	0	NA	5' UTR (NM_001370095, exon 1 of 10)	5' UTR (NM_001370095, exon 1 of 10)	117	NM_001370095	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
150358	chr21	42191071	42191480	+	0	NA	Intergenic	Intergenic	-8414	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
208551	chr7	70778551	70778850	+	0	NA	intron (NM_015570, intron 14 of 18)	intron (NM_015570, intron 14 of 18)	-353444	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
154990	chr22	37305971	37306130	+	0	NA	intron (NM_001318024, intron 8 of 12)	MIRb|SINE|MIR	23542	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
56668	chr12	119992771	119994130	+	0	NA	intron (NR_147894, intron 1 of 8)	intron (NR_147894, intron 1 of 8)	3606	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
214078	chr7	143408501	143409700	+	0	NA	promoter-TSS (NM_005232)	promoter-TSS (NM_005232)	-244	NM_005232	2041		NM_005232	ENSG00000146904	EPHA1	EPH|EPHT|EPHT1	EPH receptor A1	protein-coding
59029	chr13	20402221	20402480	+	0	NA	Intergenic	Intergenic	31496	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
89469	chr16	89083701	89084300	+	0	NA	Intergenic	Intergenic	-9852	NR_147928	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
93545	chr17	19061021	19062900	+	0	NA	promoter-TSS (NR_003271)	promoter-TSS (NR_003271)	48	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
108262	chr18	63249601	63250200	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	69869	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
122261	chr19	49051671	49052700	+	0	NA	Intergenic	Intergenic	-3074	NM_033183	94115		NM_033183	ENSG00000213030	CGB8	-	chorionic gonadotropin subunit beta 8	protein-coding
156443	chr22	41240371	41240530	+	0	NA	intron (NM_138481, intron 1 of 5)	intron (NM_138481, intron 1 of 5)	481	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
221017	chr8	116447751	116448650	+	0	NA	Intergenic	Intergenic	-123141	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
141246	chr2	239718651	239719630	+	0	NA	Intergenic	Intergenic	-43720	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
71234	chr14	105177571	105178650	+	0	NA	intron (NM_177533, intron 1 of 4)	intron (NM_177533, intron 1 of 4)	3202	NM_177533	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
168114	chr3	138770001	138770200	+	0	NA	intron (NM_006219, intron 2 of 23)	intron (NM_006219, intron 2 of 23)	-62479	NM_001256045	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
128330	chr2	54675101	54675500	+	0	NA	Intergenic	Intergenic	-49712	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133530	chr2	120228621	120229080	+	0	NA	Intergenic	L1ME4a|LINE|L1	-5450	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
71452	chr14	105710651	105711350	+	0	NA	Intergenic	Intergenic	-38193	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
101963	chr17	74720571	74720730	+	0	NA	intron (NM_175738, intron 1 of 8)	LTR1E|LTR|ERV1	-7727	NR_110298	146722		NM_139018	ENSG00000186074	CD300LF	CD300f|CLM-1|CLM1|IREM-1|IREM1|IgSF13|LMIR3|NKIR	CD300 molecule like family member f	protein-coding
234492	chrX	18887621	18887880	+	0	NA	Intergenic	Intergenic	-2546	NR_029379	100132163		NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	ncRNA
161184	chr3	39131971	39132880	+	0	NA	intron (NR_159496, intron 19 of 28)	intron (NR_159496, intron 19 of 28)	-5781	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
238964	chrX	155193851	155194150	+	0	NA	Intergenic	L1PA10|LINE|L1	-3007	NM_001303544	7411		NM_003372	ENSG00000155959	VBP1	HIBBJ46|PFD3|PFDN3|VBP-1	VHL binding protein 1	protein-coding
144991	chr20	37406421	37407100	+	0	NA	TTS (NM_198291)	TTS (NM_198291)	60620	NM_198291	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
228087	chr9	96415021	96415600	+	0	NA	intron (NM_153695, intron 1 of 4)	AluYj4|SINE|Alu	3060	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
16905	chr1	155875601	155876130	+	0	NA	intron (NM_152280, intron 2 of 3)	intron (NM_152280, intron 2 of 3)	16298	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
9287	chr1	46413451	46414330	+	0	NA	TTS (NM_001441)	TTS (NM_001441)	19573	NM_001441	2166		NM_001441	ENSG00000117480	FAAH	FAAH-1|FAAH1|PSAB	fatty acid amide hydrolase	protein-coding
105721	chr18	2711801	2712350	+	0	NA	intron (NM_015295, intron 17 of 47)	MSTB1|LTR|ERVL-MaLR	56349	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
151025	chr21	44509451	44509800	+	0	NA	intron (NR_103707, intron 5 of 6)	intron (NR_103707, intron 5 of 6)	3581	NR_103707	54082		NR_103707	ENSG00000235890	TSPEAR-AS1	C21orf31	TSPEAR antisense RNA 1	ncRNA
196452	chr6	43508551	43508850	+	0	NA	intron (NM_001271882, intron 2 of 5)	intron (NM_001271882, intron 2 of 5)	1643	NM_001012974	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
207256	chr7	43870821	43871100	+	0	NA	intron (NM_001204871, intron 4 of 6)	MIR|SINE|MIR	-1443	NM_032014	64951		NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
163905	chr3	52530201	52531700	+	0	NA	intron (NM_022908, intron 1 of 13)	intron (NM_022908, intron 1 of 13)	2907	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
60480	chr13	41196521	41196800	+	0	NA	intron (NR_120423, intron 3 of 3)	intron (NR_120423, intron 3 of 3)	-2091	NM_032138	84078		NM_032138	ENSG00000120696	KBTBD7	-	kelch repeat and BTB domain containing 7	protein-coding
128284	chr2	54595921	54596750	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	37941	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
61813	chr13	75635021	75635280	+	0	NA	intron (NM_005358, intron 2 of 29)	intron (NM_005358, intron 2 of 29)	844	NR_120411	101927155		NR_120410	ENSG00000261105	LMO7-AS1	UCHL3-AS1	LMO7 antisense RNA 1	ncRNA
224709	chr9	21434351	21434850	+	0	NA	Intergenic	Intergenic	-5839	NM_024013	3439		NM_024013	ENSG00000197919	IFNA1	IFL|IFN|IFN-ALPHA|IFN-alphaD|IFNA13|IFNA@|leIF D	interferon alpha 1	protein-coding
142482	chr20	4661021	4661500	+	0	NA	Intergenic	MER48|LTR|ERV1	-25196	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
229538	chr9	122852351	122852650	+	0	NA	intron (NM_001100588, intron 18 of 20)	SVA_D|Retroposon|SVA	-23912	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
57631	chr12	122507751	122508300	+	0	NA	intron (NR_036436, intron 8 of 9)	AluSz|SINE|Alu	-7093	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
232981	chr9	136977931	136979390	+	0	NA	intron (NM_000954, intron 1 of 6)	CpG	1156	NM_000954	5730		NM_000954	ENSG00000107317	PTGDS	L-PGDS|LPGDS|PDS|PGD2|PGDS|PGDS2	prostaglandin D2 synthase	protein-coding
190166	chr5	178147071	178147230	+	0	NA	intron (NM_022762, intron 8 of 10)	intron (NM_022762, intron 8 of 10)	6735	NM_017838	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
37666	chr11	22921051	22921150	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-60626	NM_001195637	100500938		NM_001195637	ENSG00000255359	CCDC179	-	coiled-coil domain containing 179	protein-coding
33340	chr10	116787571	116788350	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	39608	NR_162126	113218494		NR_162126		MIR9851	-	microRNA 9851	ncRNA
163655	chr3	52195571	52196550	+	0	NA	Intergenic	Intergenic	-2023	NM_199166	211		NM_000688	ENSG00000023330	ALAS1	ALAS|ALAS-H|ALAS3|ALASH|MIG4	5'-aminolevulinate synthase 1	protein-coding
121214	chr19	46616321	46617700	+	0	NA	Intergenic	L2c|LINE|L2	8079	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
154646	chr22	36333001	36333530	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-46358	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
56377	chr12	113161421	113162100	+	0	NA	intron (NM_024072, intron 18 of 19)	intron (NM_024072, intron 18 of 19)	-2583	NR_106956	102466222		NR_106956	ENSG00000276908	MIR7106	hsa-mir-7106	microRNA 7106	ncRNA
217017	chr8	23217301	23218500	+	0	NA	intron (NM_003844, intron 1 of 9)	intron (NM_003844, intron 1 of 9)	7202	NM_003844	8797		NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
222756	chr8	141420071	141420230	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-1238	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
14090	chr1	120889671	120890030	+	0	NA	exon (NM_001143883, exon 1 of 1)	exon (NM_001143883, exon 1 of 1)	104	NM_001143883	653505		NM_001143883	ENSG00000263353	PPIAL4A	COAS-2|COAS2|PPIAL4|PPIAL4B	peptidylprolyl isomerase A like 4A	protein-coding
140808	chr2	236365951	236366800	+	0	NA	intron (NM_001270585, intron 14 of 18)	intron (NM_001270585, intron 14 of 18)	-102030	NM_212556	401036		NM_212556	ENSG00000182177	ASB18	ASB-18	ankyrin repeat and SOCS box containing 18	protein-coding
236594	chrX	73615171	73615330	+	0	NA	intron (NM_001039840, intron 3 of 5)	L1MB4|LINE|L1	52102	NM_001039840	53344		NM_001039840	ENSG00000204116	CHIC1	BRX	cysteine rich hydrophobic domain 1	protein-coding
6912	chr1	31624971	31625800	+	0	NA	intron (NM_001525, intron 8 of 8)	intron (NM_001525, intron 8 of 8)	7696	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
16229	chr1	153940401	153940600	+	0	NA	exon (NM_001367466, exon 10 of 28)	exon (NM_001367466, exon 10 of 28)	4756	NM_001367466	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
199374	chr6	116264951	116266030	+	0	NA	intron (NM_001322937, intron 2 of 6)	L1PA13|LINE|L1	11319	NM_001322938	29940		NM_013352	ENSG00000111817	DSE	DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
86274	chr16	58507371	58508130	+	0	NA	intron (NM_022910, intron 10 of 15)	intron (NM_022910, intron 10 of 15)	7607	NM_001378344	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
183125	chr5	74850871	74851330	+	0	NA	intron (NM_015566, intron 1 of 12)	intron (NM_015566, intron 1 of 12)	-14793	NR_134288	441086		NR_134288		FAM169A-AS1	TP53LC02	FAM169A antisense RNA 1	ncRNA
155630	chr22	38883001	38883280	+	0	NA	Intergenic	Intergenic	-10924	NM_014292	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
66723	chr14	64456021	64456280	+	0	NA	intron (NM_001364837, intron 26 of 26)	intron (NM_001364837, intron 26 of 26)	-9349	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
104104	chr17	80276271	80276430	+	0	NA	intron (NM_020954, intron 3 of 16)	AluSp|SINE|Alu	15498	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
5886	chr1	26788911	26789650	+	0	NA	intron (NM_001202554, intron 1 of 3)	intron (NM_001202554, intron 1 of 3)	1092	NM_001374482	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
137503	chr2	197161751	197162250	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-35991	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
89593	chr16	89280501	89280880	+	0	NA	exon (NM_001256183, exon 9 of 13)	exon (NM_001256183, exon 9 of 13)	-15438	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
7502	chr1	33346671	33347280	+	0	NA	intron (NM_198040, intron 9 of 14)	intron (NM_198040, intron 9 of 14)	2924	NM_004427	1912		NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2	protein-coding
14065	chr1	120793801	120794000	+	0	NA	TTS (NR_157049)	TTS (NR_157049)	-11656	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
118834	chr19	38614001	38614400	+	0	NA	intron (NM_007181, intron 6 of 31)	intron (NM_007181, intron 6 of 31)	3753	NM_001042600	11184		NM_007181	ENSG00000104814	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
120983	chr19	45728851	45729150	+	0	NA	intron (NM_001329633, intron 1 of 1)	AluSp|SINE|Alu	1896	NM_001080469	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
123698	chr19	55020171	55020600	+	0	NA	intron (NM_001256017, intron 4 of 6).2	L1PA10|LINE|L1	17879	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
47779	chr12	6560251	6560580	+	0	NA	intron (NM_001258309, intron 15 of 16)	intron (NM_001258309, intron 15 of 16)	-4373	NM_001330324	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
50608	chr12	48676071	48676680	+	0	NA	intron (NM_017822, intron 4 of 9)	AluJo|SINE|Alu	5863	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
145631	chr20	44750351	44750850	+	0	NA	exon (NM_022358, exon 2 of 2)	exon (NM_022358, exon 2 of 2)	-4373	NR_132377	106144538		NR_132377		KCNK15-AS1	-	KCNK15 and WISP2 antisense RNA 1	ncRNA
53926	chr12	71732151	71732250	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-22663	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
185885	chr5	132692321	132692650	+	0	NA	TTS (NM_001300792)	TTS (NM_001300792)	-9856	NR_134248	105379176		NR_134248		LOC105379176	-	uncharacterized LOC105379176	ncRNA
120212	chr19	42297621	42298080	+	0	NA	intron (NM_002573, intron 4 of 4)	AluY|SINE|Alu	-4282	NM_199285	284338		NM_199285	ENSG00000188368	PRR19	-	proline rich 19	protein-coding
22600	chr1	223235021	223235300	+	0	NA	intron (NM_001037175, intron 5 of 5)	intron (NM_001037175, intron 5 of 5)	-91912	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
152949	chr22	22881571	22882000	+	0	NA	Intergenic	MER110|LTR|ERV1	-4482	NR_049835	100847006		NR_049835	ENSG00000264824	MIR5571	-	microRNA 5571	ncRNA
97055	chr17	42361671	42363100	+	0	NA	intron (NM_001369516, intron 1 of 23)	L2a|LINE|L2	26057	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
9194	chr1	45610551	45611150	+	0	NA	intron (NM_001195193, intron 4 of 12)	AluSx|SINE|Alu	13204	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
163360	chr3	50465871	50466630	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	37384	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
109808	chr19	1159351	1159600	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	14793	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
79157	chr16	278351	279450	+	0	NA	Intergenic	Intergenic	-1691	NM_001176	398		NM_001176	ENSG00000242173	ARHGDIG	RHOGDI-3	Rho GDP dissociation inhibitor gamma	protein-coding
230263	chr9	127912151	127912550	+	0	NA	exon (NM_175039, exon 4 of 6)	exon (NM_175039, exon 4 of 6)	4676	NM_175040	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
10990	chr1	84501151	84502400	+	0	NA	intron (NM_005274, intron 3 of 3)	intron (NM_005274, intron 3 of 3)	-4611	NM_001310156	100505741		NM_022354	ENSG00000122432	SPATA1	SP-2|SPAP1	spermatogenesis associated 1	protein-coding
182788	chr5	68458421	68458680	+	0	NA	Intergenic	MIRb|SINE|MIR	165973	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
18242	chr1	161050251	161050550	+	0	NA	intron (NM_001025598, intron 10 of 11)	AluSz|SINE|Alu	-4423	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
212119	chr7	116223701	116223900	+	0	NA	intron (NM_152829, intron 1 of 6)	intron (NM_152829, intron 1 of 6)	847	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
143277	chr20	25247251	25248950	+	0	NA	promoter-TSS (NM_002862)	promoter-TSS (NM_002862)	15	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
103055	chr17	77187151	77187450	+	0	NA	intron (NM_001144001, intron 1 of 14)	intron (NM_001144001, intron 1 of 14)	2087	NM_001144001	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
139196	chr2	219249221	219251030	+	0	NA	3' UTR (NM_001330213, exon 8 of 8)	3' UTR (NM_001330213, exon 8 of 8)	-3118	NM_001355221	80086		NM_001355221	ENSG00000243910	TUBA4B	TUBA4	tubulin alpha 4b	protein-coding
110781	chr19	2430351	2431130	+	0	NA	3' UTR (NM_032737, exon 12 of 12)	3' UTR (NM_032737, exon 12 of 12)	-3154	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
1993	chr1	6695271	6695430	+	0	NA	intron (NM_018198, intron 1 of 15)	intron (NM_018198, intron 1 of 15)	6466	NM_018198	55735		NM_018198	ENSG00000007923	DNAJC11	dJ126A5.1	DnaJ heat shock protein family (Hsp40) member C11	protein-coding
146219	chr20	48793521	48793780	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	34349	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
23745	chr1	232599301	232599780	+	0	NA	intron (NM_001377488, intron 1 of 21)	intron (NM_001377488, intron 1 of 21)	30593	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
107761	chr18	50429101	50429450	+	0	NA	Intergenic	Intergenic	54229	NM_001039535	220134		NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
66881	chr14	65096601	65097450	+	0	NA	intron (NR_073137, intron 1 of 3)	intron (NR_073137, intron 1 of 3)	5492	NM_002382	4149		NM_002382	ENSG00000125952	MAX	PDMCS|bHLHd4	MYC associated factor X	protein-coding
157294	chr22	44330871	44331330	+	0	NA	Intergenic	CpG	-18149	NM_001099294	85352		NM_001099294	ENSG00000138944	SHISAL1	KIAA1644	shisa like 1	protein-coding
117214	chr19	19404901	19408100	+	0	NA	intron (NM_001384527, intron 1 of 11)	CpG	825	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
2430	chr1	9603351	9603450	+	0	NA	3' UTR (NM_001010866, exon 6 of 6)	3' UTR (NM_001010866, exon 6 of 6)	14489	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
10965	chr1	84224821	84225080	+	0	NA	intron (NM_002731, intron 9 of 9)	L1MA4A|LINE|L1	43318	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
107490	chr18	47748651	47749600	+	0	NA	Intergenic	Intergenic	181534	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
75253	chr15	64904771	64904930	+	0	NA	Intergenic	AluY|SINE|Alu	-7052	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
206895	chr7	37757221	37757680	+	0	NA	Intergenic	AluSp|SINE|Alu	73684	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
65057	chr14	39274701	39274900	+	0	NA	intron (NM_203355, intron 1 of 22)	(T)n|Simple_repeat|Simple_repeat	7415	NM_001354144	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
160182	chr3	23727151	23727450	+	0	NA	Intergenic	Intergenic	-78655	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
187976	chr5	149487921	149488750	+	0	NA	Intergenic	AluSz6|SINE|Alu	57689	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
66188	chr14	60734621	60735900	+	0	NA	intron (NM_002431, intron 1 of 7)	intron (NM_002431, intron 1 of 7)	499	NM_001177963	4331		NM_002431	ENSG00000020426	MNAT1	CAP35|MAT1|RNF66|TFB3	MNAT1 component of CDK activating kinase	protein-coding
176577	chr4	98664551	98664830	+	0	NA	TTS (NR_148380)	TTS (NR_148380)	5788	NR_148380	105377342		NR_148380		TSPAN5-DT	-	TSPAN5 divergent transcript	ncRNA
46571	chr11	128500571	128500800	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	21625	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
173519	chr4	9695951	9696280	+	0	NA	Intergenic	Intergenic	-85519	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
194554	chr6	33344701	33346150	+	0	NA	Intergenic	Intergenic	-16146	NM_001369203	113523636		NM_001369203	ENSG00000286920	SMIM40	-	small integral membrane protein 40	protein-coding
38315	chr11	43944801	43945030	+	0	NA	Intergenic	Intergenic	2278	NM_001145033	387763		NM_001145033	ENSG00000187479	C11orf96	AG2	chromosome 11 open reading frame 96	protein-coding
193064	chr6	28709271	28710300	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-55310	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
82942	chr16	21853771	21854700	+	0	NA	intron (NM_001384982, intron 2 of 8)	intron (NM_001384982, intron 2 of 8)	3422	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
68077	chr14	75271401	75271630	+	0	NA	Intergenic	Intergenic	-7313	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
178969	chr4	160085621	160085700	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-307876	NR_146278	109729132		NR_146278		LINC02233	-	long intergenic non-protein coding RNA 2233	ncRNA
78273	chr15	90869171	90870050	+	0	NA	intron (NM_001382622, intron 1 of 15)	intron (NM_001382622, intron 1 of 15)	1022	NM_001382622	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
31046	chr10	88932601	88933250	+	0	NA	non-coding (NR_125373, exon 1 of 5)	non-coding (NR_125373, exon 1 of 5)	241	NR_125373	100132116		NR_125373	ENSG00000180139	ACTA2-AS1	UC001kfo|ZXF1|uc001kfo.1	ACTA2 antisense RNA 1	ncRNA
210115	chr7	98106421	98107500	+	0	NA	promoter-TSS (NM_014916)	promoter-TSS (NM_014916)	98	NM_014916	22853		NM_014916	ENSG00000164715	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK	lemur tyrosine kinase 2	protein-coding
177056	chr4	108028871	108029640	+	0	NA	intron (NM_001331027, intron 6 of 7)	intron (NM_001331027, intron 6 of 7)	24591	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
34071	chr10	124975951	124976850	+	0	NA	intron (NM_017580, intron 5 of 8)	intron (NM_017580, intron 5 of 8)	29618	NM_001363508	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
30748	chr10	84194121	84195350	+	0	NA	5' UTR (NM_001171971, exon 1 of 17)	5' UTR (NM_001171971, exon 1 of 17)	198	NM_033100	92211		NM_033100	ENSG00000148600	CDHR1	CORD15|PCDH21|PRCAD|RP65	cadherin related family member 1	protein-coding
196627	chr6	44269151	44269450	+	0	NA	Intergenic	MIRc|SINE|MIR	-1150	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
184642	chr5	107467351	107467930	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	203297	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
215793	chr8	2194301	2194880	+	0	NA	Intergenic	Charlie15a|DNA|hAT-Charlie	118001	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
125141	chr2	9962151	9962250	+	0	NA	intron (NM_198182, intron 4 of 15)	intron (NM_198182, intron 4 of 15)	10507	NM_198182	29841		NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
46620	chr11	128619721	128620530	+	0	NA	Intergenic	Intergenic	-32567	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
139168	chr2	219182401	219182880	+	0	NA	3' UTR (NM_024293, exon 9 of 9)	3' UTR (NM_024293, exon 9 of 9)	3931	NM_001321110	79137		NM_024293	ENSG00000144567	RETREG2	C2orf17|FAM134A|MAG-2	reticulophagy regulator family member 2	protein-coding
226226	chr9	66027551	66027650	+	0	NA	non-coding (NR_121572, exon 1 of 4)	non-coding (NR_121572, exon 1 of 4)	219	NR_121572	100132541		NR_121572		GXYLT1P3	-	GXYLT1 pseudogene 3	pseudo
77162	chr15	80031821	80032150	+	0	NA	Intergenic	Intergenic	-27583	NM_001242918	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
152588	chr22	21167301	21168080	+	0	NA	promoter-TSS (NR_165621)	promoter-TSS (NR_165621)	-175	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
220382	chr8	100165371	100165530	+	0	NA	intron (NM_001374321, intron 2 of 18)	intron (NM_001374321, intron 2 of 18)	6863	NM_003114	6674		NM_003114	ENSG00000104450	SPAG1	CILD28|CT140|DNAAF13|HEL-S-268|HSD-3.8|SP75|TPIS	sperm associated antigen 1	protein-coding
32154	chr10	101351271	101352130	+	0	NA	Intergenic	L2b|LINE|L2	-2333	NM_001256856	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
78086	chr15	90230771	90231720	+	0	NA	intron (NM_006384, intron 4 of 6)	intron (NM_006384, intron 4 of 6)	2696	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
57339	chr12	121747301	121747650	+	0	NA	intron (NM_001080825, intron 2 of 11)	intron (NM_001080825, intron 2 of 11)	34723	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
104565	chr17	81347601	81348180	+	0	NA	Intergenic	Intergenic	-17216	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
169070	chr3	153399751	153400350	+	0	NA	intron (NR_146713, intron 5 of 6)	L1MCb|LINE|L1	-84445	NR_160966	152118		NR_160966	ENSG00000237787	LINC02877	C3orf79	long intergenic non-protein coding RNA 2877	ncRNA
145709	chr20	45032371	45032530	+	0	NA	intron (NM_006282, intron 10 of 10)	L1PA15|LINE|L1	65938	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
176320	chr4	87679651	87679750	+	0	NA	Intergenic	Intergenic	29420	NM_001079911	1758		NM_004407	ENSG00000152592	DMP1	ARHP|ARHR|DMP-1	dentin matrix acidic phosphoprotein 1	protein-coding
69342	chr14	93956651	93956750	+	0	NA	intron (NM_016150, intron 1 of 7)	intron (NM_016150, intron 1 of 7)	347	NM_016150	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
93458	chr17	18712171	18712700	+	0	NA	intron (NM_001353223, intron 5 of 10)	MER20|DNA|hAT-Charlie	-9588	NM_001037330	147166		NM_001037330	ENSG00000291110	TRIM16L	TRIM70	tripartite motif containing 16 like (pseudogene)	pseudo
96796	chr17	41867421	41867680	+	0	NA	3' UTR (NM_198830, exon 28 of 28)	3' UTR (NM_198830, exon 28 of 28)	-2127	NM_018143	55175		NM_018143	ENSG00000178502	KLHL11	-	kelch like family member 11	protein-coding
26981	chr10	26773801	26774000	+	0	NA	intron (NR_145410, intron 3 of 11)	MER57E1|LTR|ERV1	76199	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
217230	chr8	26573451	26574350	+	0	NA	intron (NM_001197293, intron 1 of 13)	intron (NM_001197293, intron 1 of 13)	-4045	NM_001386	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
965	chr1	1781651	1781750	+	0	NA	Intergenic	L2a|LINE|L2	-1669	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
134864	chr2	148714421	148715200	+	0	NA	intron (NM_015630, intron 2 of 13)	L1PA11|LINE|L1	70059	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
30971	chr10	87869171	87869580	+	0	NA	intron (NM_001304717, intron 2 of 9)	AluSz|SINE|Alu	5750	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
35733	chr11	2036651	2037700	+	0	NA	Intergenic	Intergenic	-35709	NR_131224	283120		NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2	H19 imprinted maternally expressed transcript	ncRNA
215694	chr8	1024351	1024450	+	0	NA	intron (NM_001346810, intron 2 of 14)	intron (NM_001346810, intron 2 of 14)	-141174	NR_160729	105377777		NR_160729		LOC105377777	-	uncharacterized LOC105377777	ncRNA
180487	chr5	14109851	14110030	+	0	NA	Intergenic	Intergenic	-33402	NM_007118	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
63175	chr13	113727371	113727830	+	0	NA	intron (NM_002929, intron 4 of 6)	intron (NM_002929, intron 4 of 6)	23489	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
211880	chr7	111092071	111092380	+	0	NA	intron (NM_018334, intron 1 of 1)	intron (NM_018334, intron 1 of 1)	1098	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
113443	chr19	9825271	9825430	+	0	NA	Intergenic	AluSz|SINE|Alu	-2568	NM_001048241	59286		NM_024292	ENSG00000198258	UBL5	HUB1	ubiquitin like 5	protein-coding
90201	chr17	417751	417950	+	0	NA	Intergenic	Intergenic	-3827	NR_136407	105371430		NR_136407	ENSG00000241525	LOC105371430	-	uncharacterized LOC105371430	ncRNA
51492	chr12	52098351	52098650	+	0	NA	intron (NR_120440, intron 1 of 1)	SATR2|Satellite|Satellite	4931	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
30302	chr10	75235401	75237130	+	0	NA	promoter-TSS (NM_144589)	promoter-TSS (NM_144589)	-308	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
24383	chr1	241736471	241736630	+	0	NA	intron (NM_001367482, intron 10 of 27)	L2c|LINE|L2	84269	NM_001367482	128025		NM_144625	ENSG00000162843	WDR64	-	WD repeat domain 64	protein-coding
69708	chr14	98192851	98193350	+	0	NA	Intergenic	Intergenic	-214976	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
223160	chr8	143535751	143536450	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	5347	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
121857	chr19	48252521	48253230	+	0	NA	intron (NM_001351783, intron 1 of 12)	MER33|DNA|hAT-Charlie	-2800	NR_040599	100505812		NR_040599	ENSG00000268001	CARD8-AS1	-	CARD8 antisense RNA 1	ncRNA
108036	chr18	59129821	59130280	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-9834	NM_001307941	90701		NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
123666	chr19	54882871	54883300	+	0	NA	intron (NM_133269, intron 2 of 4).8	AluJb|SINE|Alu	8850	NM_133274	2204		NM_002000	ENSG00000186431	FCAR	CD89|CTB-61M7.2|FcalphaR|FcalphaRI	Fc alpha receptor	protein-coding
76832	chr15	77418471	77418630	+	0	NA	intron (NM_001385027, intron 1 of 6)	intron (NM_001385027, intron 1 of 6)	1554	NM_001385026	79834		NM_024776	ENSG00000173517	PEAK1	SGK269	pseudopodium enriched atypical kinase 1	protein-coding
225991	chr9	41273601	41275200	+	0	NA	Intergenic	TAR1|Satellite|telo	-40565	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
26792	chr10	23332221	23332580	+	0	NA	intron (NM_001371909, intron 2 of 15)	L1ME3Cz|LINE|L1	-11557	NR_155752	105376453		NR_155752	ENSG00000224215	C10orf67-AS1	-	C10orf67 antisense RNA 1	ncRNA
41024	chr11	65440401	65440600	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	-3958	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
11807	chr1	92818071	92818750	+	0	NA	Intergenic	Intergenic	-13576	NR_146333	6125		NM_000969	ENSG00000122406	RPL5	L5|MSTP030|PPP1R135|uL18	ribosomal protein L5	protein-coding
27269	chr10	30025321	30025850	+	0	NA	intron (NM_001350001, intron 4 of 4)	intron (NM_001350001, intron 4 of 4)	34001	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
200364	chr6	134169601	134169800	+	0	NA	3' UTR (NM_001291995, exon 11 of 11)	3' UTR (NM_001291995, exon 11 of 11)	5166	NM_005627	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
218810	chr8	59075921	59076180	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	43097	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
150945	chr21	44295151	44296530	+	0	NA	intron (NM_000383, intron 12 of 13)	intron (NM_000383, intron 12 of 13)	-4213	NM_002626	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
104472	chr17	81120621	81120900	+	0	NA	exon (NM_004920, exon 10 of 13)	exon (NM_004920, exon 10 of 13)	4613	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
98510	chr17	47500621	47500880	+	0	NA	Intergenic	Intergenic	-8130	NR_033934	653479		NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
217384	chr8	28100351	28101330	+	0	NA	intron (NM_018091, intron 3 of 14)	intron (NM_018091, intron 3 of 14)	7701	NM_001284224	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
60982	chr13	46687871	46688430	+	0	NA	intron (NM_015116, intron 6 of 18)	intron (NM_015116, intron 6 of 18)	109011	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
139072	chr2	218861951	218862580	+	0	NA	intron (NM_006522, intron 1 of 3)	intron (NM_006522, intron 1 of 3)	2460	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
233963	chrX	2638301	2638580	+	0	NA	TTS (NR_033381).2	TTS (NR_033381).2	-23093	NR_037842	100359394		NR_037842	ENSG00000230542	LINC00102	NCRNA00102	long intergenic non-protein coding RNA 102	ncRNA
187949	chr5	149272451	149272750	+	0	NA	intron (NM_001146337, intron 1 of 17)	intron (NM_001146337, intron 1 of 17)	741	NM_001146337	134265		NM_152406	ENSG00000157510	AFAP1L1	-	actin filament associated protein 1 like 1	protein-coding
117800	chr19	29872071	29872630	+	0	NA	Intergenic	CpG	-51307	NM_001252641	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
29043	chr10	67763371	67764900	+	0	NA	Intergenic	CpG	-67940	NM_013266	29119		NM_013266	ENSG00000183230	CTNNA3	ARVD13|VR22	catenin alpha 3	protein-coding
56867	chr12	120284721	120285150	+	0	NA	Intergenic	AluSz|SINE|Alu	-6845	NM_001385735	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
1262	chr1	2304301	2304500	+	0	NA	exon (NM_003036, exon 5 of 7)	exon (NM_003036, exon 5 of 7)	48261	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
162424	chr3	48415471	48416030	+	0	NA	exon (NM_001130082, exon 19 of 38)	exon (NM_001130082, exon 19 of 38)	13713	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
206722	chr7	36570601	36571530	+	0	NA	intron (NM_001177506, intron 13 of 21)	intron (NM_001177506, intron 13 of 21)	29055	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
179292	chr4	177315551	177316650	+	0	NA	intron (NM_018248, intron 1 of 9)	MER44A|DNA|TcMar-Tigger	6226	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
216405	chr8	18083451	18085150	+	0	NA	promoter-TSS (NR_125430)	promoter-TSS (NR_125430)	-193	NM_177924	427		NM_004315	ENSG00000104763	ASAH1	AC|ACDase|ASAH|PHP|PHP32|SMAPME	N-acylsphingosine amidohydrolase 1	protein-coding
159685	chr3	15521251	15521350	+	0	NA	intron (NM_005677, intron 1 of 16)	intron (NM_005677, intron 1 of 16)	406	NM_005677	8292		NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
168755	chr3	151204521	151205350	+	0	NA	intron (NM_053002, intron 14 of 42)	intron (NM_053002, intron 14 of 42)	-1719	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
140977	chr2	237969551	237970280	+	0	NA	intron (NM_001278305, intron 1 of 9)	intron (NM_001278305, intron 1 of 9)	1122	NM_001278305	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
43087	chr11	74770051	74770150	+	0	NA	intron (NM_001098638, intron 1 of 5)	intron (NM_001098638, intron 1 of 5)	21251	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
33019	chr10	110733521	110733850	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	89349	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
226077	chr9	62550271	62550850	+	0	NA	Intergenic	Intergenic	17998	NR_147619	103908604		NR_147619		FAM88F	-	family with sequence similarity 88 member F	ncRNA
66206	chr14	61285951	61286630	+	0	NA	Intergenic	Intergenic	-4952	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
201530	chr6	149140801	149141250	+	0	NA	Intergenic	Intergenic	-76899	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
111031	chr19	3075171	3075330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10536	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
223019	chr8	143295351	143295700	+	0	NA	intron (NM_030895, intron 2 of 2)	intron (NM_030895, intron 2 of 2)	4108	NM_030895	79943		NM_030895	ENSG00000185730	ZNF696	-	zinc finger protein 696	protein-coding
67403	chr14	69796071	69796230	+	0	NA	intron (NM_003049, intron 1 of 4)	intron (NM_003049, intron 1 of 4)	1091	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
9236	chr1	45820271	45820700	+	0	NA	intron (NM_001319245, intron 1 of 28)	L1M4|LINE|L1	16872	NM_001319245	23139		NM_015112	ENSG00000086015	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
163113	chr3	50121401	50122250	+	0	NA	intron (NR_135301, intron 3 of 3)	intron (NR_135301, intron 3 of 3)	-20837	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
15308	chr1	149857001	149857280	+	0	NA	intron (NR_168447, intron 1 of 1).2	AluJo|SINE|Alu	4019	NM_001034077	554313		NM_001034077	ENSG00000270276	H4C15	H4-16|H4/o|H4C1|H4C11|H4C12|H4C13|H4C14|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST2H4B	H4 clustered histone 15	protein-coding
100133	chr17	58413101	58413300	+	0	NA	intron (NM_017763, intron 2 of 9)	CR1_Mam|LINE|CR1	4334	NM_017763	54894		NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
119498	chr19	40470771	40471130	+	0	NA	intron (NM_020971, intron 1 of 35)	intron (NM_020971, intron 1 of 35)	3949	NM_020971	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
159418	chr3	13548671	13549150	+	0	NA	promoter-TSS (NM_001998)	promoter-TSS (NM_001998)	-215	NM_001998	2199		NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
121351	chr19	46823071	46823230	+	0	NA	Intergenic	MIRb|SINE|MIR	7554	NR_024258	100170220		NR_024258		SNAR-E	-	small NF90 (ILF3) associated RNA E	snRNA
111304	chr19	3604571	3605480	+	0	NA	intron (NM_201636, intron 1 of 3)	intron (NM_201636, intron 1 of 3)	1850	NM_201636	6915		NM_001060	ENSG00000006638	TBXA2R	BDPLT13|TXA2-R	thromboxane A2 receptor	protein-coding
229729	chr9	124873651	124874600	+	0	NA	intron (NM_030978, intron 4 of 5)	intron (NM_030978, intron 4 of 5)	11995	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
189830	chr5	177086421	177087600	+	0	NA	promoter-TSS (NM_002011)	promoter-TSS (NM_002011)	95	NM_002011	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
126274	chr2	27191421	27191900	+	0	NA	Intergenic	Intergenic	20608	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
141122	chr2	238945851	238945950	+	0	NA	Intergenic	Intergenic	-19631	NR_034162	401039		NM_001001698	ENSG00000227744	LINC01940	-	long intergenic non-protein coding RNA 1940	ncRNA
152976	chr22	23127351	23127450	+	0	NA	intron (NM_014433, intron 4 of 6)	intron (NM_014433, intron 4 of 6)	14590	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
64082	chr14	22584121	22584750	+	0	NA	intron (NM_001344, intron 1 of 2)	FLAM_A|SINE|Alu	4789	NM_001344	1603		NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
195275	chr6	36491321	36491830	+	0	NA	TTS (NM_001286580)	TTS (NM_001286580)	48575	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
174150	chr4	36243581	36245500	+	0	NA	promoter-TSS (NM_015230)	promoter-TSS (NM_015230)	-26	NR_146894	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
42048	chr11	67455401	67455680	+	0	NA	exon (NM_145200, exon 1 of 6)	exon (NM_145200, exon 1 of 6)	186	NM_001300895	57010		NM_145200	ENSG00000175544	CABP4	CRSD|CSNB2B	calcium binding protein 4	protein-coding
14320	chr1	143879851	143880200	+	0	NA	non-coding (NR_160914, exon 2 of 3)	non-coding (NR_160914, exon 2 of 3)	5282	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
60791	chr13	45320951	45321450	+	0	NA	Intergenic	Intergenic	15247	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
94695	chr17	30667521	30668480	+	0	NA	Intergenic	Intergenic	-41608	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
182294	chr5	57650371	57650530	+	0	NA	promoter-TSS (NR_104668)	promoter-TSS (NR_104668)	-210	NR_104668	101928505		NR_104668	ENSG00000287709	LOC101928505	-	uncharacterized LOC101928505	ncRNA
109977	chr19	1399801	1400300	+	0	NA	intron (NM_000156, intron 1 of 5)	intron (NM_000156, intron 1 of 5)	1492	NM_138924	2593		NM_000156	ENSG00000130005	GAMT	CCDS2|HEL-S-20|PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
57137	chr12	121227951	121228250	+	0	NA	intron (NR_046373, intron 4 of 10)	intron (NR_046373, intron 4 of 10)	17971	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
3488	chr1	16017771	16017930	+	0	NA	exon (NM_001349685, exon 1 of 3)	exon (NM_001349685, exon 1 of 3)	193	NM_001349685	27129		NM_014424	ENSG00000173641	HSPB7	cvHSP	heat shock protein family B (small) member 7	protein-coding
78753	chr15	99002271	99002430	+	0	NA	intron (NM_001102612, intron 1 of 4)	L1MD2|LINE|L1	3306	NM_001102612	145814		NM_001102612	ENSG00000183571	PGPEP1L	-	pyroglutamyl-peptidase I like	protein-coding
5165	chr1	24926581	24927300	+	0	NA	intron (NM_001031680, intron 3 of 5)	intron (NM_001031680, intron 3 of 5)	3336	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
237335	chrX	118520951	118521250	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	25191	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
123283	chr19	53543951	53544930	+	0	NA	intron (NM_001317113, intron 2 of 4)	AluYf1|SINE|Alu	5652	NM_001253800	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
17650	chr1	157193771	157194030	+	0	NA	Intergenic	Intergenic	-55309	NM_005240	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
191936	chr6	15758251	15758350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-95242	NM_001271669	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
7539	chr1	34884571	34884730	+	0	NA	intron (NM_001080418, intron 8 of 11)	MamGypsy2-LTR|LTR|Gypsy	-24901	NM_001320261	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
149133	chr21	17775301	17776350	+	0	NA	Intergenic	L1PA7|LINE|L1	16684	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
157788	chr22	46769371	46769980	+	0	NA	intron (NR_104292, intron 2 of 13)	intron (NR_104292, intron 2 of 13)	-4252	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
3259	chr1	14923991	14924750	+	0	NA	exon (NM_001018000, exon 1 of 8)	exon (NM_001018000, exon 1 of 8)	241	NM_001370229	23254		NM_015209	ENSG00000189337	KAZN	C1orf196|KAZ	kazrin, periplakin interacting protein	protein-coding
71950	chr15	23052301	23052700	+	0	NA	Intergenic	L1M1|LINE|L1	-12827	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
93810	chr17	20588851	20589030	+	0	NA	Intergenic	Intergenic	9216	NM_001190790	256223		NM_001190790	ENSG00000214819	CDRT15L2	-	CMT1A duplicated region transcript 15 like 2	protein-coding
48185	chr12	8023671	8024030	+	0	NA	Intergenic	Intergenic	-8866	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
94660	chr17	30291221	30292730	+	0	NA	promoter-TSS (NM_000386)	promoter-TSS (NM_000386)	-31	NM_000386	642		NM_000386	ENSG00000108578	BLMH	BH|BMH	bleomycin hydrolase	protein-coding
123912	chr19	55349951	55350450	+	0	NA	3' UTR (NM_001369799, exon 6 of 6)	3' UTR (NM_001369799, exon 6 of 6)	4519	NM_144613	125965		NM_144613	ENSG00000160471	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit 6B2	protein-coding
104	chr1	479501	480180	+	0	NA	Intergenic	Intergenic	15605	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
99298	chr17	49794351	49794650	+	0	NA	intron (NM_001199156, intron 2 of 12)	AluSz|SINE|Alu	5819	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
15742	chr1	151075251	151075750	+	0	NA	intron (NM_001323912, intron 2 of 7)	AluY|SINE|Alu	4739	NM_001323912	126626		NM_144618	ENSG00000143458	GABPB2	GABPB-2	GA binding protein transcription factor subunit beta 2	protein-coding
59691	chr13	29532121	29532380	+	0	NA	intron (NM_003045, intron 4 of 12)	intron (NM_003045, intron 4 of 12)	-44500	NR_046378	100874107		NR_046378		MTUS2-AS1	-	MTUS2 antisense RNA 1	ncRNA
102561	chr17	75851451	75851980	+	0	NA	intron (NM_012478, intron 1 of 7)	intron (NM_012478, intron 1 of 7)	3620	NM_012478	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
133362	chr2	117785701	117785950	+	0	NA	Intergenic	Intergenic	-28866	NM_006773	8886		NM_006773	ENSG00000088205	DDX18	Has1|MrDb	DEAD-box helicase 18	protein-coding
128562	chr2	60891071	60891730	+	0	NA	intron (NM_001291746, intron 1 of 9)	intron (NM_001291746, intron 1 of 9)	9826	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
212060	chr7	114983451	114983750	+	0	NA	intron (NM_199072, intron 4 of 4)	AluSx1|SINE|Alu	61446	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
228251	chr9	97989621	97989880	+	0	NA	intron (NM_006401, intron 1 of 6)	intron (NM_006401, intron 1 of 6)	6409	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
6607	chr1	28815321	28815850	+	0	NA	intron (NM_000911, intron 1 of 2)	intron (NM_000911, intron 1 of 2)	3415	NM_000911	4985		NM_000911	ENSG00000116329	OPRD1	DOP|DOR|DOR1|OPRD	opioid receptor delta 1	protein-coding
58438	chr12	131958021	131958580	+	0	NA	intron (NM_015409, intron 1 of 52)	intron (NM_015409, intron 1 of 52)	8358	NM_015409	57634		NM_015409	ENSG00000183495	EP400	CAGH32|P400|TNRC12	E1A binding protein p400	protein-coding
202252	chr6	156933051	156933350	+	0	NA	intron (NM_001371656, intron 5 of 20)	intron (NM_001371656, intron 5 of 20)	-103227	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
218204	chr8	42013751	42014050	+	0	NA	intron (NM_001305878, intron 2 of 13)	MER58B|DNA|hAT-Charlie	-37850	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
131815	chr2	98616901	98617330	+	0	NA	intron (NM_001330354, intron 5 of 5)	intron (NM_001330354, intron 5 of 5)	8526	NM_001330353	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
81362	chr16	4841801	4842000	+	0	NA	intron (NR_136700, intron 3 of 14)	L2b|LINE|L2	5388	NM_032569	84656		NM_032569	ENSG00000140632	GLYR1	BM045|HIBDL|N-PAC|NP60|NPAC|hNDF	glyoxylate reductase 1 homolog	protein-coding
36872	chr11	10488371	10488530	+	0	NA	intron (NM_001172431, intron 5 of 13)	L2c|LINE|L2	19876	NR_039705	100616263		NR_039705	ENSG00000283813	MIR4485	mir-4485	microRNA 4485	ncRNA
5356	chr1	25334401	25334930	+	0	NA	intron (NR_135790, intron 1 of 2)	THE1B-int|LTR|ERVL-MaLR	3589	NM_001321772	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
132604	chr2	108565651	108566450	+	0	NA	intron (NM_001371495, intron 1 of 10)	intron (NM_001371495, intron 1 of 10)	-4655	NM_001371498	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
129744	chr2	70975251	70976130	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-2755	NM_001369683	79998		NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
187588	chr5	142835551	142835850	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	33210	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
163736	chr3	52330401	52330600	+	0	NA	intron (NM_015512, intron 6 of 77)	L2a|LINE|L2	14181	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
141297	chr2	240431471	240432550	+	0	NA	Intergenic	Intergenic	-3653	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
186131	chr5	134153351	134153880	+	0	NA	3' UTR (NM_170679, exon 6 of 6)	3' UTR (NM_170679, exon 6 of 6)	23335	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
90886	chr17	2388701	2389400	+	0	NA	intron (NM_020310, intron 4 of 5)	intron (NM_020310, intron 4 of 5)	12010	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
6748	chr1	30723801	30724650	+	0	NA	promoter-TSS (NM_002379)	promoter-TSS (NM_002379)	-640	NM_002379	4146		NM_002379	ENSG00000162510	MATN1	CMP|CRTM	matrilin 1	protein-coding
70931	chr14	104392801	104393230	+	0	NA	Intergenic	Intergenic	169431	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
79359	chr16	628371	628530	+	0	NA	3' UTR (NM_021168, exon 6 of 6)	3' UTR (NM_021168, exon 6 of 6)	-2535	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
22479	chr1	221718901	221719100	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	17900	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
75773	chr15	68776121	68776380	+	0	NA	Intergenic	MIR|SINE|MIR	25675	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
153245	chr22	24023551	24023850	+	0	NA	intron (NM_001199281, intron 1 of 36)	L1MB4|LINE|L1	12330	NM_001199281	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
114789	chr19	13777251	13777780	+	0	NA	intron (NM_014047, intron 2 of 2)	AluJo|SINE|Alu	3059	NM_014047	28974		NM_014047	ENSG00000104979	C19orf53	HSPC023|L10K|LYDG10	chromosome 19 open reading frame 53	protein-coding
164256	chr3	57397271	57397760	+	0	NA	intron (NM_001366028, intron 43 of 73)	intron (NM_001366028, intron 43 of 73)	-104830	NM_001142733	142686		NM_130387	ENSG00000239388	ASB14	-	ankyrin repeat and SOCS box containing 14	protein-coding
132954	chr2	111463771	111465030	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	30761	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
100716	chr17	63865921	63866580	+	0	NA	Intergenic	Intergenic	7427	NM_020991	1443		NM_020991	ENSG00000213218	CSH2	CS-2|CSB|GHB1|PL|hCS-B	chorionic somatomammotropin hormone 2	protein-coding
138885	chr2	217713301	217713850	+	0	NA	intron (NR_026597, intron 1 of 12)	intron (NR_026597, intron 1 of 12)	43018	NR_026597	729582		NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
147486	chr20	59151551	59151650	+	0	NA	intron (NM_001384354, intron 2 of 7)	intron (NM_001384354, intron 2 of 7)	-12221	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
41394	chr11	66010301	66010500	+	0	NA	Intergenic	LTR3A|LTR|ERVK	-1608	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
230686	chr9	128726821	128727730	+	0	NA	intron (NR_046240, intron 1 of 1)	L1PA11|LINE|L1	2813	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
129643	chr2	70146101	70146900	+	0	NA	Intergenic	Intergenic	-21184	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
132703	chr2	109001971	109002150	+	0	NA	Intergenic	Intergenic	-12840	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
114617	chr19	12974821	12975630	+	0	NA	TTS (NM_152654)	TTS (NM_152654)	5607	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
130180	chr2	83339671	83340230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-182864	NR_146482	101928031		NR_146482	ENSG00000232548	LINC01809	-	long intergenic non-protein coding RNA 1809	ncRNA
154697	chr22	36397071	36397430	+	0	NA	Intergenic	AluJo|SINE|Alu	-9283	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
211752	chr7	107193921	107194550	+	0	NA	intron (NM_001244262, intron 8 of 10).2	intron (NM_001244262, intron 8 of 10).2	25232	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
128475	chr2	57899901	57900100	+	0	NA	Intergenic	Intergenic	-7651	NM_001288838	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
121678	chr19	47506751	47506850	+	0	NA	intron (NR_038456, intron 1 of 11)	intron (NR_038456, intron 1 of 11)	8263	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
108584	chr18	75204321	75205430	+	0	NA	intron (NM_175907, intron 1 of 1)	CpG	638	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
156833	chr22	41945901	41947700	+	0	NA	promoter-TSS (NM_001304370)	promoter-TSS (NM_001304370)	-46	NM_001304370	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
86754	chr16	67653571	67655180	+	0	NA	exon (NM_001013838, exon 31 of 38)	exon (NM_001013838, exon 31 of 38)	5885	NM_001082486	65057		NM_022914	ENSG00000102977	ACD	PIP1|PTOP|TINT1|TPP1	ACD shelterin complex subunit and telomerase recruitment factor	protein-coding
231583	chr9	131528171	131528730	+	0	NA	intron (NR_134666, intron 5 of 7)	intron (NR_134666, intron 5 of 7)	2813	NM_031432	83549		NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
227556	chr9	92113971	92114130	+	0	NA	intron (NM_001368272, intron 1 of 15)	AluJr|SINE|Alu	1363	NM_006415	10558		NM_006415	ENSG00000090054	SPTLC1	ALS27|HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI	serine palmitoyltransferase long chain base subunit 1	protein-coding
34803	chr11	270971	271330	+	0	NA	Intergenic	Intergenic	-7257	NM_001276700	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
20882	chr1	202140621	202141230	+	0	NA	intron (NM_001256129, intron 1 of 5)	MIR1_Amn|SINE|MIR	3812	NM_138795	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
208928	chr7	74082301	74082500	+	0	NA	Intergenic	AluJr|SINE|Alu	-1404	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
118007	chr19	34124871	34125130	+	0	NA	Intergenic	LTR45B|LTR|ERV1	-47504	NR_169265	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
143026	chr20	21099751	21101760	+	0	NA	intron (NR_147212, intron 1 of 2)	CpG	5603	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
209238	chr7	75776301	75777100	+	0	NA	intron (NM_001371936, intron 1 of 3)	L1ME3A|LINE|L1	-4489	NM_001371938	10344		NM_006072	ENSG00000006606	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	C-C motif chemokine ligand 26	protein-coding
84216	chr16	29925421	29926880	+	0	NA	promoter-TSS (NR_110933)	promoter-TSS (NR_110933)	76	NM_178863	253980		NM_178863	ENSG00000174943	KCTD13	BACURD1|FKSG86|PDIP1|POLDIP1|hBACURD1	potassium channel tetramerization domain containing 13	protein-coding
74031	chr15	52234451	52234790	+	0	NA	intron (NM_018728, intron 23 of 40)	intron (NM_018728, intron 23 of 40)	42580	NR_031670	100302202		NR_031670	ENSG00000221052	MIR1266	MIRN1266|hsa-mir-1266|mir-1266	microRNA 1266	ncRNA
193408	chr6	30442271	30442950	+	0	NA	Intergenic	MER90|LTR|ERV1	-46899	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
238513	chrX	153670151	153670250	+	0	NA	intron (NM_001366979, intron 11 of 11)	intron (NM_001366979, intron 11 of 11)	3088	NM_001135740	139728		NM_198452	ENSG00000130822	PNCK	BSTK3|CaMK1b	pregnancy up-regulated nonubiquitous CaM kinase	protein-coding
223313	chr8	143811621	143811880	+	0	NA	intron (NM_182706, intron 9 of 36).2	intron (NM_182706, intron 9 of 36).2	1292	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
149716	chr21	34086551	34087480	+	0	NA	intron (NM_032476, intron 1 of 2)	intron (NM_032476, intron 1 of 2)	13437	NM_006933	6526		NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
101514	chr17	67800421	67800750	+	0	NA	Intergenic	Intergenic	-24918	NM_182641	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
179127	chr4	169005651	169006150	+	0	NA	intron (NM_032783, intron 3 of 4)	intron (NM_032783, intron 3 of 4)	4355	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
38233	chr11	36458301	36458700	+	0	NA	intron (NM_001160167, intron 8 of 8)	intron (NM_001160167, intron 8 of 8)	51772	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
119466	chr19	40432671	40432830	+	0	NA	Intergenic	Intergenic	-6758	NM_013376	29950		NM_013376	ENSG00000197019	SERTAD1	SEI1|TRIP-Br1|TRIPBR1	SERTA domain containing 1	protein-coding
47259	chr12	1474371	1474530	+	0	NA	intron (NM_178039, intron 17 of 17)	intron (NM_178039, intron 17 of 17)	-26041	NR_028415	100292680		NR_028415	ENSG00000249628	LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
85000	chr16	31484071	31484230	+	0	NA	intron (NR_130783, intron 1 of 11)	AluSq|SINE|Alu	1027	NR_130783	6524		NM_003041	ENSG00000140675	SLC5A2	SGLT2	solute carrier family 5 member 2	protein-coding
37389	chr11	17074501	17074700	+	0	NA	TTS (NR_000022)	TTS (NR_000022)	144	NR_000022	26822		NR_000022	ENSG00000272034	SNORD14A	RNU14|RNU14A|U14|U14-S13-5	small nucleolar RNA, C/D box 14A	snoRNA
74540	chr15	60509451	60509750	+	0	NA	intron (NM_134260, intron 6 of 11)	intron (NM_134260, intron 6 of 11)	30422	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
47317	chr12	1716471	1717150	+	0	NA	intron (NM_001375365, intron 1 of 7).2	intron (NM_001375365, intron 1 of 7).2	25740	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
112957	chr19	7807221	7808300	+	0	NA	Intergenic	MIRb|SINE|MIR	20276	NR_002931	440508		NR_002931		CLEC4GP1	-	C-type lectin domain family 4 member G pseudogene 1	pseudo
55128	chr12	98600051	98600700	+	0	NA	TTS (NR_003015)	TTS (NR_003015)	740	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
204784	chr7	5615421	5615980	+	0	NA	Intergenic	Intergenic	22884	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
26966	chr10	26684401	26685000	+	0	NA	Intergenic	Intergenic	-12724	NM_001321979	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
216742	chr8	22455151	22455850	+	0	NA	intron (NM_005605, intron 1 of 13)	intron (NM_005605, intron 1 of 13)	14422	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
34263	chr10	131874971	131875280	+	0	NA	Intergenic	Intergenic	-25883	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
185837	chr5	132469051	132469250	+	0	NA	intron (NR_161242, intron 3 of 3)	MLT1D|LTR|ERVL-MaLR	21623	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
78061	chr15	90104271	90104630	+	0	NA	intron (NR_149130, intron 2 of 2)	intron (NR_149130, intron 2 of 2)	-1982	NM_002168	3418		NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDH-2|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2	protein-coding
61984	chr13	80235871	80236030	+	0	NA	Intergenic	Intergenic	103709	NM_001318537	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
217152	chr8	26050121	26050430	+	0	NA	Intergenic	CpG	-4862	NM_022659	64641		NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	EBF transcription factor 2	protein-coding
165226	chr3	72998751	72999250	+	0	NA	intron (NM_001318025, intron 2 of 7)	intron (NM_001318025, intron 2 of 7)	2189	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
55821	chr12	108849951	108850380	+	0	NA	intron (NM_001161330, intron 2 of 13)	intron (NM_001161330, intron 2 of 13)	7418	NM_018984	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
80928	chr16	3807401	3808300	+	0	NA	intron (NM_004380, intron 3 of 30)	intron (NM_004380, intron 3 of 30)	72270	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
51829	chr12	53451601	53453280	+	0	NA	intron (NM_031989, intron 1 of 14)	CpG	338	NM_001098620	5094		NM_005016	ENSG00000197111	PCBP2	HNRNPE2|HNRPE2|hnRNP-E2	poly(rC) binding protein 2	protein-coding
112607	chr19	6738401	6738900	+	0	NA	Intergenic	Intergenic	-1028	NM_001080452	56927		NM_020171	ENSG00000125734	GPR108	LUSTR2	G protein-coupled receptor 108	protein-coding
197282	chr6	70724401	70724800	+	0	NA	intron (NM_001281440, intron 1 of 10)	intron (NM_001281440, intron 1 of 10)	56070	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
32722	chr10	104256301	104257280	+	0	NA	intron (NM_001191003, intron 2 of 5)	intron (NM_001191003, intron 2 of 5)	1898	NM_004832	9446		NM_004832	ENSG00000148834	GSTO1	GSTO 1-1|GSTTLp28|HEL-S-21|P28|SPG-R	glutathione S-transferase omega 1	protein-coding
134713	chr2	144510341	144511650	+	0	NA	TTS (NR_033258)	TTS (NR_033258)	-8619	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
190050	chr5	177555701	177556280	+	0	NA	Intergenic	AluSx|SINE|Alu	-1427	NM_001190946	54540		NM_019057	ENSG00000146067	FAM193B	IRIZIO	family with sequence similarity 193 member B	protein-coding
182439	chr5	62299171	62299960	+	0	NA	Intergenic	Intergenic	-6597	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
197913	chr6	89410351	89410650	+	0	NA	intron (NM_021244, intron 1 of 6)	intron (NM_021244, intron 1 of 6)	1773	NM_021244	58528		NM_021244	ENSG00000025039	RRAGD	HOMG7|RAGD|bA11D8.2.1	Ras related GTP binding D	protein-coding
238207	chrX	137564471	137564630	+	0	NA	Intergenic	Intergenic	-1577	NM_003413	7547		NM_003413	ENSG00000156925	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
108209	chr18	63150951	63151300	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	168644	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
222980	chr8	143214671	143214830	+	0	NA	intron (NM_178172, intron 2 of 3)	intron (NM_178172, intron 2 of 3)	1532	NM_178172	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
206486	chr7	33056401	33057030	+	0	NA	intron (NM_001374336, intron 1 of 10)	intron (NM_001374336, intron 1 of 10)	6061	NM_001002010	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
143844	chr20	32524221	32524530	+	0	NA	intron (NM_001256798, intron 2 of 10)	L3|LINE|CR1	14416	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
83606	chr16	28191171	28191600	+	0	NA	intron (NM_015171, intron 1 of 23)	intron (NM_015171, intron 1 of 23)	20580	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
3564	chr1	16159871	16160730	+	0	NA	Intergenic	Intergenic	-4231	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
118166	chr19	35027951	35028750	+	0	NA	Intergenic	Intergenic	-2120	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
145598	chr20	44609751	44611100	+	0	NA	intron (NM_001281444, intron 4 of 5)	intron (NM_001281444, intron 4 of 5)	27846	NM_001281445	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
211519	chr7	105308721	105308980	+	0	NA	intron (NM_001350742, intron 2 of 16)	intron (NM_001350742, intron 2 of 16)	-10071	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
178427	chr4	147788371	147788530	+	0	NA	intron (NM_024605, intron 1 of 22)	AluSx3|SINE|Alu	5855	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
96962	chr17	42222001	42222580	+	0	NA	intron (NM_012448, intron 5 of 18)	intron (NM_012448, intron 5 of 18)	-27796	NM_032484	84514		NM_032484	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
210101	chr7	97835501	97835800	+	0	NA	Intergenic	Intergenic	36515	NM_001178077	440		NM_001673	ENSG00000070669	ASNS	ASNSD|TS11	asparagine synthetase (glutamine-hydrolyzing)	protein-coding
218660	chr8	57745471	57746000	+	0	NA	promoter-TSS (NR_134276)	promoter-TSS (NR_134276)	-414	NR_134276	286178		NR_134276	ENSG00000254139	LINC03018	-	long intergenic non-protein coding RNA 3018	ncRNA
123531	chr19	54322871	54323130	+	0	NA	Intergenic	LTR13|LTR|ERVK	-9834	NM_181985	353514		NM_021250	ENSG00000187116	LILRA5	CD85|CD85F|ILT-11|ILT11|LILRB7|LIR-9|LIR9	leukocyte immunoglobulin like receptor A5	protein-coding
220154	chr8	94959571	94960900	+	0	NA	intron (NM_001354515, intron 2 of 9)	L1MB8|LINE|L1	10675	NR_148909	137682		NM_152416	ENSG00000156170	NDUFAF6	C8orf38|FRTS5|MC1DN17	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein-coding
138331	chr2	203809801	203810600	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-57571	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
79217	chr16	361771	362730	+	0	NA	Intergenic	Intergenic	8288	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
191832	chr6	14859671	14859830	+	0	NA	Intergenic	Intergenic	-386319	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
69013	chr14	91503901	91504300	+	0	NA	intron (NR_158976, intron 2 of 16)	AluJo|SINE|Alu	6210	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
166991	chr3	125918401	125918600	+	0	NA	intron (NR_024251, intron 1 of 4)	intron (NR_024251, intron 1 of 4)	1899	NR_024250	100125556		NR_024250	ENSG00000291071	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
39427	chr11	60888971	60889330	+	0	NA	Intergenic	AluSp|SINE|Alu	17435	NM_014502	27339		NM_014502	ENSG00000110107	PRPF19	NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4	pre-mRNA processing factor 19	protein-coding
203350	chr6	170293651	170293750	+	0	NA	intron (NM_001286379, intron 1 of 10).2	CpG-24321	-1621	NM_001286380	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
204683	chr7	5501651	5502230	+	0	NA	exon (NM_001367781, exon 3 of 5)	exon (NM_001367781, exon 3 of 5)	-6023	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
138004	chr2	201262771	201263230	+	0	NA	intron (NM_033356, intron 1 of 7)	intron (NM_033356, intron 1 of 7)	2464	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
132260	chr2	102735101	102735730	+	0	NA	intron (NM_001322081, intron 1 of 5)	intron (NM_001322081, intron 1 of 5)	1473	NM_001322081	84804		NM_032718	ENSG00000135953	MFSD9	-	major facilitator superfamily domain containing 9	protein-coding
201003	chr6	139940751	139940900	+	0	NA	Intergenic	Intergenic	-35494	NR_121622	100507477		NR_121622	ENSG00000236013	LINC02941	-	long intergenic non-protein coding RNA 2941	ncRNA
224762	chr9	21970771	21971250	+	0	NA	exon (NM_001363763, exon 2 of 3)	exon (NM_001363763, exon 2 of 3)	3847	NM_000077	1029		NM_000077	ENSG00000147889	CDKN2A	ARF|CAI2|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
123816	chr19	55175921	55176480	+	0	NA	intron (NM_001297774, intron 1 of 6)	intron (NM_001297774, intron 1 of 6)	3148	NM_001297774	6861		NM_003180	ENSG00000129990	SYT5	-	synaptotagmin 5	protein-coding
84028	chr16	29500651	29501150	+	0	NA	intron (NM_001355401, intron 2 of 7)	intron (NM_001355401, intron 2 of 7)	4974	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
185496	chr5	131311801	131313730	+	0	NA	intron (NM_001038702, intron 1 of 4)	L1PA3|LINE|L1	48712	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
152872	chr22	22508071	22509100	+	0	NA	intron (NR_130642, intron 1 of 4)	CpG	157	NR_130643	140883		NM_080764	ENSG00000275004	ZNF280B	5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632	zinc finger protein 280B	protein-coding
55783	chr12	108622271	108622830	+	0	NA	3' UTR (NM_003006, exon 2 of 2)	3' UTR (NM_003006, exon 2 of 2)	9531	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
75113	chr15	64503071	64504450	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	43182	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
54468	chr12	92002201	92002800	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	139213	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
218589	chr8	55867121	55867580	+	0	NA	Intergenic	AluJb|SINE|Alu	-12485	NM_002350	4067		NM_002350	ENSG00000254087	LYN	JTK8|SAIDV|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
54100	chr12	76086371	76087000	+	0	NA	Intergenic	Intergenic	-2000	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
12859	chr1	110084281	110085650	+	0	NA	intron (NR_126382, intron 1 of 3)	intron (NR_126382, intron 1 of 3)	2277	NR_126382	104355139		NR_126382	ENSG00000258673	LINC01397	-	long intergenic non-protein coding RNA 1397	ncRNA
13339	chr1	113805851	113806230	+	0	NA	intron (NM_018364, intron 1 of 6)	MER58B|DNA|hAT-Charlie	6436	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
129175	chr2	68159801	68160430	+	0	NA	intron (NM_020143, intron 2 of 6)	AluYh3|SINE|Alu	2227	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
105970	chr18	5293951	5295600	+	0	NA	intron (NM_001243704, intron 1 of 3)	CpG	951	NM_001243702	7541		NM_003409	ENSG00000198081	ZBTB14	ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478	zinc finger and BTB domain containing 14	protein-coding
134614	chr2	144394971	144395530	+	0	NA	intron (NM_014795, intron 9 of 9)	AluJo|SINE|Alu	-62181	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
199823	chr6	127734921	127735180	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	120138	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
205018	chr7	6497501	6498130	+	0	NA	exon (NM_001145118, exon 22 of 22)	exon (NM_001145118, exon 22 of 22)	-13663	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
16500	chr1	154863571	154864480	+	0	NA	intron (NM_001204087, intron 1 of 8)	intron (NM_001204087, intron 1 of 8)	4045	NM_001365837	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
131307	chr2	96115671	96115830	+	0	NA	exon (NM_000682, exon 1 of 1)	exon (NM_000682, exon 1 of 1)	821	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
201309	chr6	144356251	144357280	+	0	NA	intron (NM_007124, intron 1 of 73)	AluSz|SINE|Alu	-48890	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
80364	chr16	2519701	2522280	+	0	NA	TTS (NM_001694)	TTS (NM_001694)	619	NM_001330449	51005		NM_015944	ENSG00000162066	AMDHD2	CGI-14	amidohydrolase domain containing 2	protein-coding
145566	chr20	44384421	44385250	+	0	NA	intron (NR_109949, intron 2 of 3)	intron (NR_109949, intron 2 of 3)	10871	NR_109949	101927219		NR_109949	ENSG00000229005	HNF4A-AS1	uc002xlx	HNF4A antisense RNA 1	ncRNA
158118	chr22	50056471	50056630	+	0	NA	intron (NM_001350317, intron 2 of 13)	intron (NM_001350317, intron 2 of 13)	1677	NM_001350317	164714		NM_001080447	ENSG00000138892	TTLL8	-	tubulin tyrosine ligase like 8	protein-coding
118198	chr19	35136921	35137730	+	0	NA	Intergenic	Intergenic	-1499	NM_021902	5348		NM_005031	ENSG00000266964	FXYD1	PLM	FXYD domain containing ion transport regulator 1	protein-coding
237881	chrX	131067951	131068250	+	0	NA	intron (NM_001282607, intron 1 of 11)	intron (NM_001282607, intron 1 of 11)	9754	NM_144967	158763		NM_144967	ENSG00000147256	ARHGAP36	-	Rho GTPase activating protein 36	protein-coding
94194	chr17	28573351	28573450	+	0	NA	3' UTR (NM_005165, exon 9 of 9)	3' UTR (NM_005165, exon 9 of 9)	-1876	NM_033198	94005		NM_033198	ENSG00000087111	PIGS	DEE95|GPIBD18|PIG-S	phosphatidylinositol glycan anchor biosynthesis class S	protein-coding
160354	chr3	27753051	27753150	+	0	NA	Intergenic	HAL1|LINE|L1	-30385	NM_001278183	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
147722	chr20	62382471	62383400	+	0	NA	Intergenic	Intergenic	-4168	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
98630	chr17	47805921	47806250	+	0	NA	Intergenic	Intergenic	15709	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
28527	chr10	50417651	50418700	+	0	NA	intron (NM_147156, intron 6 of 10)	CpG	-166659	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
67136	chr14	68682771	68683400	+	0	NA	TTS (NM_001321818)	TTS (NM_001321818)	-54298	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
134136	chr2	134173151	134173650	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	46275	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
127255	chr2	38699201	38699400	+	0	NA	intron (NM_138801, intron 4 of 6)	L1MA5|LINE|L1	33186	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
32214	chr10	101789251	101789630	+	0	NA	intron (NM_001142434, intron 13 of 14)	AluSp|SINE|Alu	-6027	NM_006993	10360		NM_006993	ENSG00000107833	NPM3	PORMIN|TMEM123	nucleophosmin/nucleoplasmin 3	protein-coding
40392	chr11	64009921	64010380	+	0	NA	intron (NM_014067, intron 4 of 10)	intron (NM_014067, intron 4 of 10)	24297	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
151188	chr21	45082821	45083280	+	0	NA	intron (NM_001346688, intron 1 of 11)	intron (NM_001346688, intron 1 of 11)	7999	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
114361	chr19	12362601	12362800	+	0	NA	intron (NM_030824, intron 3 of 5)	SVA_C|Retroposon|SVA	2983	NM_001363774	79973		NM_030824	ENSG00000198342	ZNF442	-	zinc finger protein 442	protein-coding
185468	chr5	131282371	131282850	+	0	NA	intron (NM_001038702, intron 1 of 4)	L1MB7|LINE|L1	18557	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
234630	chrX	19883951	19884900	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	3175	NM_001353891	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
48684	chr12	10567721	10568380	+	0	NA	intron (NR_146456, intron 1 of 2)	intron (NR_146456, intron 1 of 2)	14671	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
90679	chr17	1720071	1720230	+	0	NA	intron (NM_001163673, intron 1 of 9)	intron (NM_001163673, intron 1 of 9)	3627	NM_001163673	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
72424	chr15	31472601	31473630	+	0	NA	Intergenic	Intergenic	146280	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
93940	chr17	21316421	21317130	+	0	NA	Intergenic	CpG	28739	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
148433	chr20	63968051	63968150	+	0	NA	intron (NM_020713, intron 1 of 16)	intron (NM_020713, intron 1 of 16)	1830	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
219272	chr8	67432851	67432950	+	0	NA	intron (NM_020361, intron 9 of 10)	MER21C|LTR|ERVL	89066	NR_136224	102724708		NR_136223		ARFGEF1-DT	-	ARFGEF1 divergent transcript	ncRNA
89072	chr16	88461771	88461930	+	0	NA	intron (NM_153813, intron 1 of 9)	MIR3|SINE|MIR	-7068	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
175120	chr4	54941821	54943330	+	0	NA	Intergenic	AluYa5|SINE|Alu	183020	NM_002253	3791		NM_002253	ENSG00000128052	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor	protein-coding
56207	chr12	111505401	111505900	+	0	NA	intron (NM_002973, intron 14 of 24)	L1MB8|LINE|L1	70788	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
167032	chr3	126477951	126478730	+	0	NA	Intergenic	FAM|SINE|Alu	-2421	NM_001040653	79364		NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
88347	chr16	84551101	84551480	+	0	NA	Intergenic	L1ME4a|LINE|L1	-46631	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
5570	chr1	25925401	25926000	+	0	NA	Intergenic	AluJb|SINE|Alu	-18823	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
71626	chr14	106717601	106717950	+	0	NA	Intergenic	L1PBb|LINE|L1	133224	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
173880	chr4	24560601	24560800	+	0	NA	intron (NM_001358, intron 3 of 13)	Kanga1c|DNA|TcMar-Tc2	23854	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
66866	chr14	65054621	65055380	+	0	NA	intron (NM_002028, intron 11 of 11)	intron (NM_002028, intron 11 of 11)	10312	NR_039855	100616490		NR_039855	ENSG00000266531	MIR4706	mir-4706	microRNA 4706	ncRNA
17926	chr1	160287821	160288350	+	0	NA	TTS (NM_004371)	TTS (NM_004371)	-2934	NR_036492	5824		NM_002857	ENSG00000162735	PEX19	D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1	peroxisomal biogenesis factor 19	protein-coding
62001	chr13	80873751	80873850	+	0	NA	Intergenic	L1MDa|LINE|L1	-144591	NR_125770	103724386		NR_125770		LINC00377	TCONS_00021861	long intergenic non-protein coding RNA 377	ncRNA
180435	chr5	10485171	10485350	+	0	NA	Intergenic	Intergenic	7223	NR_106747	102465138		NR_106747	ENSG00000277073	MIR6131	hsa-mir-6131	microRNA 6131	ncRNA
21884	chr1	207800801	207801000	+	0	NA	TTS (NR_135298)	TTS (NR_135298)	1039	NR_029832	407026		NR_029832	ENSG00000284214	MIR29C	MIRN29C|miRNA29C|mir-29c	microRNA 29c	ncRNA
231231	chr9	129970751	129971050	+	0	NA	intron (NM_001363755, intron 4 of 15)	AluSx3|SINE|Alu	72289	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
218948	chr8	60993201	60993650	+	0	NA	Intergenic	MIR|SINE|MIR	-25677	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
227471	chr9	91122001	91122200	+	0	NA	intron (NR_135306, intron 2 of 2)	THE1B|LTR|ERVL-MaLR	3038	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
126341	chr2	27377201	27377780	+	0	NA	TTS (NR_049786)	TTS (NR_049786)	2954	NM_001201459	130557		NM_144631	ENSG00000163795	ZNF513	HMFT0656|RP58|Zfp513	zinc finger protein 513	protein-coding
175674	chr4	76987221	76987480	+	0	NA	intron (NM_018243, intron 1 of 9)	intron (NM_018243, intron 1 of 9)	37598	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
71448	chr14	105706251	105706780	+	0	NA	Intergenic	Intergenic	-33708	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
63715	chr14	21200321	21200850	+	0	NA	non-coding (NR_038971, exon 2 of 2)	non-coding (NR_038971, exon 2 of 2)	4918	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
46956	chr11	134582321	134582800	+	0	NA	Intergenic	L1MC1|LINE|L1	146078	NR_033852	283177		NR_033852	ENSG00000255545	B3GAT1-DT	-	B3GAT1 divergent transcript	ncRNA
157439	chr22	45236221	45236580	+	0	NA	intron (NM_001009880, intron 1 of 9)	intron (NM_001009880, intron 1 of 9)	4494	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
4250	chr1	19600121	19601430	+	0	NA	intron (NM_001204089, intron 1 of 3)	AluJb|SINE|Alu	3796	NM_001204088	100532736		NM_001204088	ENSG00000158747	MICOS10-NBL1	C1orf151-NBL1|DAN|DAND1|MINOS1-NBL1|NBL1	MICOS10-NBL1 readthrough	protein-coding
63674	chr14	21069601	21070590	+	0	NA	promoter-TSS (NM_018071)	promoter-TSS (NM_018071)	-209	NM_001278529	55701		NM_018071	ENSG00000165801	ARHGEF40	SOLO	Rho guanine nucleotide exchange factor 40	protein-coding
88149	chr16	81634121	81634580	+	0	NA	intron (NM_030629, intron 3 of 20)	MIRb|SINE|MIR	23002	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
204298	chr7	2672271	2672430	+	0	NA	Intergenic	AluSz6|SINE|Alu	-7172	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
49978	chr12	42125571	42125930	+	0	NA	intron (NM_001099650, intron 1 of 6)	AluJo|SINE|Alu	19124	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
90861	chr17	2369621	2370630	+	0	NA	intron (NM_014853, intron 12 of 23)	intron (NM_014853, intron 12 of 23)	30935	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
193681	chr6	31083901	31084250	+	0	NA	Intergenic	Intergenic	28500	NM_014070	29113		NM_014070	ENSG00000204542	C6orf15	STG	chromosome 6 open reading frame 15	protein-coding
131665	chr2	97665301	97665500	+	0	NA	Intergenic	MER41D|LTR|ERV1	-1356	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
38488	chr11	45867751	45868980	+	0	NA	intron (NM_021117, intron 6 of 11)	AluJr4|SINE|Alu	-17286	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
138468	chr2	206558471	206558830	+	0	NA	intron (NM_003812, intron 10 of 25)	intron (NM_003812, intron 10 of 25)	-83837	NM_001102659	200726		NM_001102659	ENSG00000235118	FAM237A	-	family with sequence similarity 237 member A	protein-coding
102636	chr17	76025521	76026130	+	0	NA	intron (NM_001320747, intron 1 of 21)	intron (NM_001320747, intron 1 of 21)	1481	NM_001320747	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
23827	chr1	234543971	234544900	+	0	NA	Intergenic	Intergenic	-12656	NR_038426	100506795		NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
202130	chr6	154868151	154868250	+	0	NA	Intergenic	Intergenic	14840	NR_036100	100422821		NR_036100	ENSG00000264814	MIR1273C	-	microRNA 1273c	ncRNA
126847	chr2	31430101	31430500	+	0	NA	Intergenic	Intergenic	-15558	NM_000379	7498		NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
84398	chr16	30332001	30332550	+	0	NA	intron (NR_002453, intron 1 of 12)	intron (NR_002453, intron 1 of 12)	3099	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
90168	chr17	300201	300600	+	0	NA	intron (NM_006987, intron 5 of 9).2	intron (NM_006987, intron 5 of 9).2	-31119	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
27809	chr10	37859371	37859530	+	0	NA	Intergenic	LTR17|LTR|ERV1	-1347	NM_001352477	57209		NM_021045	ENSG00000198105	ZNF248	bA162G10.3	zinc finger protein 248	protein-coding
11267	chr1	89064801	89066080	+	0	NA	promoter-TSS (NM_002053)	promoter-TSS (NM_002053)	-232	NM_002053	2633		NM_002053	ENSG00000117228	GBP1	hGBP1	guanylate binding protein 1	protein-coding
90400	chr17	1298221	1299230	+	0	NA	3' UTR (NM_172367, exon 3 of 3)	3' UTR (NM_172367, exon 3 of 3)	19063	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
82812	chr16	21482301	21482500	+	0	NA	intron (NR_027155, intron 3 of 28)	AluY|SINE|Alu	-19126	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
159637	chr3	15303251	15303350	+	0	NA	intron (NM_004844, intron 3 of 8)	intron (NM_004844, intron 3 of 8)	29286	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
237387	chrX	119487171	119487330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18130	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
51595	chr12	52690671	52691900	+	0	NA	exon (NM_175078, exon 9 of 9)	exon (NM_175078, exon 9 of 9)	-10878	NM_006121	3848		NM_006121	ENSG00000167768	KRT1	AEI2|CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK	keratin 1	protein-coding
107389	chr18	46083371	46083530	+	0	NA	TTS (NM_001001937)	TTS (NM_001001937)	-11190	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
110369	chr19	1907651	1908250	+	0	NA	intron (NM_001329539, intron 1 of 5)	intron (NM_001329539, intron 1 of 5)	2551	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
22973	chr1	226073871	226075100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-9090	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
9455	chr1	50420871	50421380	+	0	NA	exon (NM_032110, exon 2 of 3)	exon (NM_032110, exon 2 of 3)	2318	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
142522	chr20	4956071	4956630	+	0	NA	intron (NM_203327, intron 2 of 16)	intron (NM_203327, intron 2 of 16)	45160	NM_005116	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
198302	chr6	100461151	100461680	+	0	NA	intron (NM_005068, intron 2 of 11)	CpG	3041	NM_001374769	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
131801	chr2	98551321	98551780	+	0	NA	intron (NM_001351424, intron 14 of 25)	intron (NM_001351424, intron 14 of 25)	56962	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
86122	chr16	57671821	57672080	+	0	NA	intron (NM_170776, intron 1 of 11)	AluJb|SINE|Alu	3644	NM_001308360	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
58283	chr12	130337521	130337780	+	0	NA	promoter-TSS (NM_004764).2	promoter-TSS (NM_004764).2	-237	NM_004764	9271		NM_004764	ENSG00000125207	PIWIL1	CT80.1|HIWI|MIWI|PIWI	piwi like RNA-mediated gene silencing 1	protein-coding
1756	chr1	6011971	6013630	+	0	NA	intron (NM_001199861, intron 1 of 15)	(GGAGGT)n|Simple_repeat|Simple_repeat	-13533	NM_172130	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
187872	chr5	148443701	148444230	+	0	NA	Intergenic	Intergenic	60007	NM_030793	81545		NM_030793	ENSG00000145868	FBXO38	Fbx38|HMN2D|HMND6|MOKA|SP329	F-box protein 38	protein-coding
175773	chr4	77787101	77787480	+	0	NA	intron (NM_001365006, intron 1 of 11)	(TAA)n|Simple_repeat|Simple_repeat	31774	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
49741	chr12	31721701	31722550	+	0	NA	intron (NM_001278412, intron 1 of 8)	HERVL40-int|LTR|ERVL	6896	NM_001113402	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
51560	chr12	52568151	52568450	+	0	NA	exon (NM_175053, exon 7 of 9)	exon (NM_175053, exon 7 of 9)	5543	NM_175053	121391		NM_175053	ENSG00000170484	KRT74	ADWH|ECTD7|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4	keratin 74	protein-coding
137030	chr2	190721901	190722480	+	0	NA	Intergenic	MER21A|LTR|ERVL	63032	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
196771	chr6	45488551	45489380	+	0	NA	intron (NM_001278478, intron 3 of 5)	intron (NM_001278478, intron 3 of 5)	66690	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
32655	chr10	103789821	103790080	+	0	NA	intron (NM_014631, intron 2 of 13)	intron (NM_014631, intron 2 of 13)	43171	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
235697	chrX	48789451	48789900	+	0	NA	intron (NM_002049, intron 1 of 5)	intron (NM_002049, intron 1 of 5)	3085	NM_002049	2623		NM_002049	ENSG00000102145	GATA1	ERYF1|GATA-1|GF-1|GF1|HAEADA|NF-E1|NFE1|XLANP|XLTDA|XLTT	GATA binding protein 1	protein-coding
208765	chr7	73545351	73545450	+	0	NA	intron (NM_001707, intron 2 of 5)	AluY|SINE|Alu	11836	NR_036682	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
105699	chr18	2681251	2681550	+	0	NA	intron (NM_015295, intron 5 of 47)	AluSx|SINE|Alu	25674	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
114867	chr19	13868601	13868800	+	0	NA	intron (NR_146097, intron 1 of 1)	AluJr|SINE|Alu	3497	NR_146096	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
58076	chr12	124555101	124555300	+	0	NA	intron (NM_001077261, intron 1 of 47)	MIR|SINE|MIR	12412	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
144342	chr20	34994951	34995380	+	0	NA	intron (NM_020884, intron 27 of 44)	intron (NM_020884, intron 27 of 44)	-4693	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
9181	chr1	45597821	45598080	+	0	NA	intron (NM_001195193, intron 2 of 12)	L2|LINE|L2	13909	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
112365	chr19	5974671	5975680	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	2965	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
7395	chr1	32925621	32926180	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-24511	NM_001329723	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
144193	chr20	34268951	34269530	+	0	NA	3' UTR (NM_001385218, exon 4 of 4)	3' UTR (NM_001385218, exon 4 of 4)	27817	NM_001672	434		NM_001672	ENSG00000101440	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
101161	chr17	65101871	65102230	+	0	NA	intron (NR_110801, intron 2 of 2)	AluSz|SINE|Alu	1238	NR_110801	100507002		NR_110801		LOC100507002	-	uncharacterized LOC100507002	ncRNA
97444	chr17	43641321	43641780	+	0	NA	3' UTR (NM_001040002, exon 4 of 4)	3' UTR (NM_001040002, exon 4 of 4)	20013	NM_013999	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
42583	chr11	72005021	72005280	+	0	NA	intron (NM_001286561, intron 23 of 26)	intron (NM_001286561, intron 23 of 26)	5223	NM_001145055	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
55056	chr12	96441721	96442650	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-41746	NM_001170464	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
110063	chr19	1489801	1491680	+	0	NA	promoter-TSS (NM_017573)	promoter-TSS (NM_017573)	-290	NM_017573	54760		NM_017573	ENSG00000115257	PCSK4	PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding
13137	chr1	111663971	111664400	+	0	NA	promoter-TSS (NM_001370217)	promoter-TSS (NM_001370217)	-609	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
208839	chr7	73694901	73695300	+	0	NA	intron (NR_045512, intron 9 of 10)	AluJr|SINE|Alu	11503	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
138837	chr2	216498251	216500000	+	0	NA	intron (NM_000998, intron 1 of 3)	intron (NM_000998, intron 1 of 3)	281	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
165077	chr3	71475571	71475930	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluSz|SINE|Alu	66339	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
107083	chr18	35027401	35027980	+	0	NA	intron (NM_001143826, intron 2 of 7)	MLT1H1|LTR|ERVL-MaLR	-13723	NR_046177	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
99316	chr17	49830971	49831330	+	0	NA	3' UTR (NM_007067, exon 15 of 15)	3' UTR (NM_007067, exon 15 of 15)	-14736	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
214109	chr7	143900021	143900630	+	0	NA	intron (NM_001206938, intron 1 of 8).2	MLT1F2|LTR|ERVL-MaLR	1851	NM_001206938	9747		NM_014719	ENSG00000198420	TCAF1	FAM115A|GATD9A	TRPM8 channel associated factor 1	protein-coding
62873	chr13	110632571	110632930	+	0	NA	intron (NR_040104, intron 4 of 8)	LTR12C|LTR|ERV1	17122	NM_001242881	55739		NM_018210	ENSG00000213995	NAXD	CARKD|LP3298|PEBEL2	NAD(P)HX dehydratase	protein-coding
44893	chr11	114631271	114631630	+	0	NA	Intergenic	L1PA3|LINE|L1	-35664	NM_001077639	54827		NM_017678	ENSG00000137634	NXPE4	C11orf33|FAM55D	neurexophilin and PC-esterase domain family member 4	protein-coding
53650	chr12	68331571	68332780	+	0	NA	5' UTR (NM_001354970, exon 1 of 14)	5' UTR (NM_001354970, exon 1 of 14)	187	NM_001368282	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
2652	chr1	10431871	10432030	+	0	NA	intron (NR_037187, intron 1 of 2)	L1MC4|LINE|L1	1200	NR_036462	378708		NM_199294	ENSG00000175279	CENPS	APITD1|CENP-S|FAAP16|MHF1	centromere protein S	protein-coding
44922	chr11	115502871	115503700	+	0	NA	intron (NM_001301043, intron 1 of 11)	CpG	1130	NM_001301045	23705		NM_014333	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
199241	chr6	111829651	111829750	+	0	NA	intron (NM_002037, intron 2 of 13)	MIR3|SINE|MIR	43371	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
216597	chr8	22046021	22046400	+	0	NA	exon (NM_003867, exon 3 of 5)	exon (NM_003867, exon 3 of 5)	-2721	NM_001323397	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
30556	chr10	79708901	79709580	+	0	NA	intron (NM_001278495, intron 3 of 6)	intron (NM_001278495, intron 3 of 6)	6013	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
237014	chrX	102546901	102547300	+	0	NA	Intergenic	Intergenic	-2865	NR_002216	55999		NR_002216	ENSG00000290811	NXF4	-	nuclear RNA export factor 4 (pseudogene)	pseudo
114438	chr19	12694301	12694950	+	0	NA	exon (NM_032301, exon 3 of 10)	exon (NM_032301, exon 3 of 10)	2006	NM_032301	84261		NM_032301	ENSG00000132004	FBXW9	Fbw9|MEC-15	F-box and WD repeat domain containing 9	protein-coding
50494	chr12	47797421	47798780	+	0	NA	intron (NM_001368046, intron 5 of 25)	intron (NM_001368046, intron 5 of 25)	21803	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
185331	chr5	126801701	126802580	+	0	NA	intron (NR_134488, intron 1 of 11)	intron (NR_134488, intron 1 of 11)	25004	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
31304	chr10	92601321	92602080	+	0	NA	intron (NM_004523, intron 1 of 21)	AluJr|SINE|Alu	8570	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
184890	chr5	112711071	112711230	+	0	NA	intron (NM_001354902, intron 1 of 14)	MER1B|DNA|hAT-Charlie	3652	NM_001354902	324		NM_000038	ENSG00000134982	APC	BTPS2|DESMD|DP2|DP2.5|DP3|GS|PPP1R46	APC regulator of WNT signaling pathway	protein-coding
63927	chr14	21997171	21997980	+	0	NA	Intergenic	Intergenic	-326558	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
18035	chr1	160587371	160588130	+	0	NA	Intergenic	MIRb|SINE|MIR	-8234	NM_001184882	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
190444	chr5	179850501	179850900	+	0	NA	intron (NM_016175, intron 2 of 6)	intron (NM_016175, intron 2 of 6)	8117	NM_016175	51149		NM_016175	ENSG00000161010	MRNIP	C5orf45	MRN complex interacting protein	protein-coding
103423	chr17	78248401	78248600	+	0	NA	non-coding (NR_164160, exon 1 of 2)	non-coding (NR_164160, exon 1 of 2)	184	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
29588	chr10	71731671	71732730	+	0	NA	exon (NM_022124, exon 31 of 68)	exon (NM_022124, exon 31 of 68)	5650	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
204266	chr7	2635171	2636400	+	0	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	3799	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
5820	chr1	26677521	26677980	+	0	NA	Intergenic	Intergenic	16381	NR_135804	101928728		NR_135804	ENSG00000260063	LOC101928728	-	uncharacterized LOC101928728	ncRNA
232183	chr9	134185571	134186180	+	0	NA	Intergenic	Intergenic	-21311	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
230700	chr9	128761251	128761550	+	0	NA	intron (NM_001375956, intron 1 of 15)	AluSx1|SINE|Alu	10527	NM_006336	10444		NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related cell cycle regulator	protein-coding
67909	chr14	74611301	74613050	+	0	NA	promoter-TSS (NM_000428)	promoter-TSS (NM_000428)	62	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
216411	chr8	18750501	18750730	+	0	NA	intron (NM_015310, intron 9 of 15)	LTR12C|LTR|ERV1	58252	NM_206909	23362		NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
137217	chr2	191539071	191539300	+	0	NA	Intergenic	Intergenic	-138887	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
207219	chr7	43658601	43659280	+	0	NA	intron (NM_001371313, intron 1 of 8)	L2a|LINE|L2	70583	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
185004	chr5	115179851	115180900	+	0	NA	promoter-TSS (NM_018700)	promoter-TSS (NM_018700)	-81	NM_018700	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
162262	chr3	47292421	47292880	+	0	NA	intron (NM_025010, intron 1 of 9)	AluJb|SINE|Alu	9706	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
126525	chr2	28508351	28509050	+	0	NA	intron (NM_153021, intron 1 of 57)	intron (NM_153021, intron 1 of 57)	12629	NM_001170585	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
195524	chr6	37261251	37261550	+	0	NA	intron (NM_017772, intron 1 of 12)	AluSz6|SINE|Alu	-3245	NR_104443								
40022	chr11	62669171	62669800	+	0	NA	intron (NM_001367941, intron 3 of 6)	intron (NM_001367941, intron 3 of 6)	-2188	NM_001085372	790955		NM_001085372	ENSG00000204922	UQCC3	C11orf83|CCDS41658.1|MC3DN9|UNQ655	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding
29312	chr10	69334921	69335530	+	0	NA	intron (NM_000188, intron 1 of 17)	intron (NM_000188, intron 1 of 17)	16378	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
138496	chr2	207149551	207149850	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	-15563	NM_001270944	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
147895	chr20	62884871	62885330	+	0	NA	intron (NM_001193369, intron 15 of 15)	intron (NM_001193369, intron 15 of 15)	-2197	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
8634	chr1	41699101	41699780	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-214757	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
174232	chr4	37828101	37828630	+	0	NA	intron (NM_018290, intron 1 of 13)	intron (NM_018290, intron 1 of 13)	1679	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
47119	chr12	681401	681990	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-18250	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
37187	chr11	14248751	14248850	+	0	NA	intron (NM_006108, intron 7 of 15)	intron (NM_006108, intron 7 of 15)	109685	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
5483	chr1	25674451	25675050	+	0	NA	intron (NM_020379, intron 1 of 11)	L2b|LINE|L2	-21405	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
173752	chr4	16225941	16227980	+	0	NA	promoter-TSS (NM_153365)	promoter-TSS (NM_153365)	297	NR_027696	202020		NM_152684	ENSG00000263327	TAPT1-AS1	-	TAPT1 antisense RNA 1 (head to head)	ncRNA
102114	chr17	75025171	75026100	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-6936	NR_110835	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
84156	chr16	29754351	29755700	+	0	NA	Intergenic	MER65-int|LTR|ERV1	-9035	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
99788	chr17	51169151	51169250	+	0	NA	intron (NM_001198682, intron 3 of 3)	AluSg|SINE|Alu	2478	NM_001018138	4831		NM_002512	ENSG00000243678	NME2	NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF	NME/NM23 nucleoside diphosphate kinase 2	protein-coding
218967	chr8	61675921	61676380	+	0	NA	exon (NM_001164756, exon 5 of 5)	exon (NM_001164756, exon 5 of 5)	13661	NM_020164	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
66376	chr14	61481621	61482730	+	0	NA	intron (NM_006255, intron 9 of 13)	AluSz|SINE|Alu	88019	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
152428	chr22	20582001	20582200	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	74053	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
15278	chr1	149746901	149747300	+	0	NA	Intergenic	CpG	-35594	NR_166122	2209		NM_000566	ENSG00000150337	FCGR1A	CD64|CD64A|FCG1|FCGR1|FCRI|FcgammaRI|IGFR1	Fc gamma receptor Ia	protein-coding
191442	chr6	10660751	10660850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	33809	NM_001145020	347744		NM_001145020	ENSG00000137434	C6orf52	-	chromosome 6 open reading frame 52	protein-coding
165393	chr3	95705571	95706380	+	0	NA	Intergenic	Intergenic	-22782	NR_077228	100287639		NR_077228	ENSG00000293294	MTHFD2P1	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1	pseudo
222719	chr8	141334171	141334530	+	0	NA	Intergenic	Intergenic	-6199	NR_024441	731779		NR_024441	ENSG00000253595	LINC01300	-	long intergenic non-protein coding RNA 1300	ncRNA
87613	chr16	74367551	74369150	+	0	NA	promoter-TSS (NR_026950)	promoter-TSS (NR_026950)	-95	NR_026950	283922		NR_026950	ENSG00000290890	PDPR2P	-	pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene	pseudo
3296	chr1	15343821	15344080	+	0	NA	promoter-TSS (NR_148918)	promoter-TSS (NR_148918)	-67	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
67225	chr14	68951221	68951480	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	27952	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
25150	chr10	4767021	4767330	+	0	NA	Intergenic	Intergenic	-59002	NR_073127	83592		NM_031436	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|HTSP1|LoopADR|TAKR|hTSP|htAKR	aldo-keto reductase family 1 member E2	protein-coding
93442	chr17	18643921	18644180	+	0	NA	intron (NM_001039397, intron 1 of 9)	intron (NM_001039397, intron 1 of 9)	377	NM_001039397	254272		NM_001039397	ENSG00000189375	TBC1D28	-	TBC1 domain family member 28	protein-coding
69358	chr14	94003271	94003800	+	0	NA	intron (NR_024183, intron 6 of 10).2	intron (NR_024183, intron 6 of 10).2	6234	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
120181	chr19	42261951	42262250	+	0	NA	Intergenic	L2a|LINE|L2	-6430	NM_001304815	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
30752	chr10	84197671	84197830	+	0	NA	intron (NM_033100, intron 3 of 16)	intron (NM_033100, intron 3 of 16)	3213	NM_033100	92211		NM_033100	ENSG00000148600	CDHR1	CORD15|PCDH21|PRCAD|RP65	cadherin related family member 1	protein-coding
55744	chr12	108340971	108341330	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-1839	NM_004072	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
169414	chr3	161035151	161035250	+	0	NA	intron (NM_139245, intron 2 of 3)	L1PA7|LINE|L1	69532	NM_001349161	8706		NM_003781	ENSG00000169255	B3GALNT1	B3GALANT1|B3GALT3|GLCT3|GLOB|Gb4Cer|P1|beta3Gal-T3|galT3	beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group)	protein-coding
225342	chr9	34639721	34640580	+	0	NA	Intergenic	AluSp|SINE|Alu	-2324	NM_001282207	10280		NM_005866	ENSG00000147955	SIGMAR1	ALS16|DSMA2|HMNR2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding
76387	chr15	74618821	74619200	+	0	NA	intron (NM_001130028, intron 1 of 12)	intron (NM_001130028, intron 1 of 12)	3174	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
82958	chr16	21917871	21918100	+	0	NA	Intergenic	MIRb|SINE|MIR	-35376	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
60281	chr13	40622551	40623030	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	43851	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
71555	chr14	106318721	106319130	+	0	NA	Intergenic	Intergenic	31251	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
157876	chr22	49678271	49678830	+	0	NA	Intergenic	Intergenic	-21031	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
167683	chr3	130109401	130109880	+	0	NA	intron (NR_024252, intron 1 of 4)	intron (NR_024252, intron 1 of 4)	1793	NR_024252	729375		NR_024252	ENSG00000291081	FAM86HP	-	family with sequence similarity 86, member A pseudogene	pseudo
133309	chr2	113720171	113720430	+	0	NA	TTS (NR_039943)	TTS (NR_039943)	1068	NR_039943	100616208		NR_039943	ENSG00000265429	MIR4782	-	microRNA 4782	ncRNA
128509	chr2	60549421	60549680	+	0	NA	intron (NM_022893, intron 1 of 3)	CpG	3948	NM_001363864	53335		NM_018014	ENSG00000119866	BCL11A	CTIP1|DILOS|EVI9|HBFQTL5|SMARCM1|ZNF856	BCL11 transcription factor A	protein-coding
235679	chrX	48604171	48604530	+	0	NA	exon (NM_001347219, exon 9 of 10)	exon (NM_001347219, exon 9 of 10)	6858	NM_017883	64743		NM_017883	ENSG00000101940	WDR13	MG21	WD repeat domain 13	protein-coding
105677	chr18	2643001	2643400	+	0	NA	Intergenic	Intergenic	12195	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
203307	chr6	170089371	170090130	+	0	NA	Intergenic	Intergenic	-70892	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
103231	chr17	77494701	77495800	+	0	NA	intron (NM_001293697, intron 8 of 9)	intron (NM_001293697, intron 8 of 9)	19615	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
174098	chr4	35975771	35976100	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	268004	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
190007	chr5	177476071	177476930	+	0	NA	Intergenic	MIR|SINE|MIR	-2866	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
212156	chr7	116843721	116844700	+	0	NA	Intergenic	Intergenic	-18377	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
95227	chr17	35266071	35266230	+	0	NA	3' UTR (NM_001330183, exon 4 of 4)	3' UTR (NM_001330183, exon 4 of 4)	23078	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
112650	chr19	6857801	6858200	+	0	NA	TTS (NM_001258207)	TTS (NM_001258207)	-29579	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
185447	chr5	131256521	131257710	+	0	NA	Intergenic	Intergenic	-6938	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
151453	chr21	46172021	46172280	+	0	NA	intron (NM_032261, intron 1 of 3)	intron (NM_032261, intron 1 of 3)	12309	NM_001142854	84221		NM_032261	ENSG00000160284	SPATC1L	C21orf56	spermatogenesis and centriole associated 1 like	protein-coding
146256	chr20	48923151	48923250	+	0	NA	intron (NM_006420, intron 1 of 38)	L2a|LINE|L2	1489	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
134278	chr2	135794751	135795580	+	0	NA	intron (NM_002299, intron 13 of 16)	intron (NM_002299, intron 13 of 16)	-25026	NR_045486	100507600		NR_045486	ENSG00000226806	LCT-AS1	-	LCT antisense RNA 1	ncRNA
160211	chr3	23919101	23919630	+	0	NA	exon (NM_001253383, exon 4 of 4)	exon (NM_001253383, exon 4 of 4)	2233	NM_001253383	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
61943	chr13	78648901	78649300	+	0	NA	intron (NM_024546, intron 1 of 5)	L2|LINE|L2	10055	NM_024546	79596		NM_024546	ENSG00000152193	OBI1	C13orf7|RNF219	ORC ubiquitin ligase 1	protein-coding
23446	chr1	228454271	228454430	+	0	NA	Intergenic	L1MB5|LINE|L1	3523	NM_033445	92815		NM_033445	ENSG00000181218	H2AC25	H2AW|HIST3H2A	H2A clustered histone 25	protein-coding
104751	chr17	81687321	81687950	+	0	NA	intron (NM_004712, intron 4 of 21)	intron (NM_004712, intron 4 of 21)	3624	NM_004712	9146		NM_004712	ENSG00000185359	HGS	HRS	hepatocyte growth factor-regulated tyrosine kinase substrate	protein-coding
238250	chrX	147875901	147876100	+	0	NA	Intergenic	LTR06|LTR|ERV1	35817	NR_024501	100126270		NR_024499	ENSG00000268066	FMR1-AS1	ASFMR1|FMR1-AS|FMR1AS|FMR4|FMR5	FMR1 antisense RNA 1	ncRNA
177313	chr4	109669471	109669630	+	0	NA	intron (NM_017918, intron 4 of 7)	L1MC1|LINE|L1	33895	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
167784	chr3	133441721	133442550	+	0	NA	intron (NR_135276, intron 4 of 4)	AluJo|SINE|Alu	13641	NR_135278	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
80874	chr16	3587701	3587900	+	0	NA	intron (NM_032444, intron 12 of 14)	intron (NM_032444, intron 12 of 14)	-10397	NR_075083	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
10829	chr1	77946351	77946850	+	0	NA	3' UTR (NM_003902, exon 20 of 20)	3' UTR (NM_003902, exon 20 of 20)	32472	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
99123	chr17	49223121	49223900	+	0	NA	TTS (NM_016428)	TTS (NM_016428)	7256	NM_001143804	162466		NM_178500	ENSG00000173868	PHOSPHO1	-	phosphoethanolamine/phosphocholine phosphatase 1	protein-coding
112900	chr19	7635201	7635500	+	0	NA	Intergenic	L1MB8|LINE|L1	-1631	NM_174895	126006		NM_174895	ENSG00000174788	PCP2	GPSM4|PCD5	Purkinje cell protein 2	protein-coding
173556	chr4	10090451	10090900	+	0	NA	intron (NM_005112, intron 2 of 11)	intron (NM_005112, intron 2 of 11)	-11983	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
68740	chr14	91020601	91020800	+	0	NA	intron (NM_001322228, intron 1 of 15)	MLT2B4|LTR|ERVL	39424	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
222687	chr8	141265201	141266930	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	11498	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
41528	chr11	66275121	66275730	+	0	NA	intron (NM_030981, intron 4 of 5)	intron (NM_030981, intron 4 of 5)	-2750	NM_182553	254263		NM_182553	ENSG00000174871	CNIH2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding
182849	chr5	69414651	69415530	+	0	NA	promoter-TSS (NM_001038603)	promoter-TSS (NM_001038603)	-26	NM_001038603	153562		NM_144724	ENSG00000152939	MARVELD2	DFNB49|MARVD2|MRVLDC2|Tric	MARVEL domain containing 2	protein-coding
9672	chr1	52700721	52701430	+	0	NA	Intergenic	Intergenic	-2728	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
143434	chr20	30277651	30277950	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	8737	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
192286	chr6	20528021	20528700	+	0	NA	Intergenic	AluJb|SINE|Alu	-6097	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
197564	chr6	79666371	79667130	+	0	NA	intron (NM_031469, intron 1 of 3)	Tigger16a|DNA|TcMar-Tigger	35421	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
180527	chr5	14559401	14559600	+	0	NA	Intergenic	AluSz|SINE|Alu	-22292	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
155985	chr22	39916151	39916250	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	-10404	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
35604	chr11	1757471	1758850	+	0	NA	intron (NM_001909, intron 4 of 8)	intron (NM_001909, intron 4 of 8)	5767	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
162036	chr3	46692801	46694120	+	0	NA	promoter-TSS (NM_001370525)	promoter-TSS (NM_001370525)	219	NM_147129	259173		NM_147129	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
177019	chr4	106340651	106341000	+	0	NA	intron (NM_001142415, intron 6 of 6)	L1PA16|LINE|L1	-24142	NM_001163436	93627		NM_033115	ENSG00000145348	TBCK	FERRY1|Fy-1|HSPC302|IHPRF3|TBCKL	TBC1 domain containing kinase	protein-coding
70232	chr14	100849401	100849630	+	0	NA	non-coding (NR_046473, exon 7 of 7)	non-coding (NR_046473, exon 7 of 7)	-2875	NR_030528	768222		NR_030528	ENSG00000211574	MIR770	MIRN770|hsa-mir-770	microRNA 770	ncRNA
148843	chr21	8406551	8408000	+	0	NA	intron (NR_038958, intron 4 of 6).2	intron (NR_038958, intron 4 of 6).2	10349	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
67672	chr14	73132421	73132880	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-3857	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
174066	chr4	26930771	26931130	+	0	NA	intron (NM_020860, intron 2 of 11)	MLT1F2|LTR|ERVL-MaLR	70109	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
150727	chr21	43746901	43747100	+	0	NA	intron (NM_001331030, intron 4 of 9)	AluJb|SINE|Alu	5514	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
96108	chr17	39633151	39633450	+	0	NA	intron (NM_032192, intron 4 of 6)	intron (NM_032192, intron 4 of 6)	-3780	NM_001165937	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
96460	chr17	40225501	40225900	+	0	NA	intron (NM_133264, intron 1 of 7)	AluJb|SINE|Alu	6396	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
213491	chr7	139052821	139053280	+	0	NA	intron (NM_020119, intron 12 of 12)	intron (NM_020119, intron 12 of 12)	-8893	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
2475	chr1	9663051	9663550	+	0	NA	intron (NM_005026, intron 1 of 23)	MER21-int|LTR|ERVL	-8714	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
92066	chr17	7513671	7514250	+	0	NA	exon (NM_000937, exon 30 of 30)	exon (NM_000937, exon 30 of 30)	29594	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
125943	chr2	25201451	25201750	+	0	NA	Intergenic	L2|LINE|L2	-2713	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
213760	chr7	140524251	140524550	+	0	NA	intron (NM_001362678, intron 16 of 19)	intron (NM_001362678, intron 16 of 19)	-44831	NM_001145125	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
194803	chr6	34239471	34239630	+	0	NA	intron (NM_145905, intron 1 of 4)	MIRc|SINE|MIR	759	NM_145905	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
43933	chr11	93196851	93198330	+	0	NA	promoter-TSS (NM_001286139)	promoter-TSS (NM_001286139)	-164	NM_001286139	120103		NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
208476	chr7	67050271	67050430	+	0	NA	intron (NR_134540, intron 8 of 14)	intron (NR_134540, intron 8 of 14)	53517	NM_018264	55253		NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog	protein-coding
107555	chr18	48803721	48803980	+	0	NA	intron (NM_014772, intron 9 of 11)	MLT1K|LTR|ERVL-MaLR	133250	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
180845	chr5	32584601	32584830	+	0	NA	promoter-TSS (NM_006713)	promoter-TSS (NM_006713)	-842	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
204032	chr7	1929871	1931480	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	9896	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
70454	chr14	102054321	102054580	+	0	NA	3' UTR (NM_001376, exon 78 of 78)	3' UTR (NM_001376, exon 78 of 78)	32594	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
180370	chr5	7290001	7290200	+	0	NA	Intergenic	Intergenic	16614	NR_033906	442132		NM_001034846		LOC442132	-	golgin A6 family-like 1 pseudogene	pseudo
96801	chr17	41885771	41885930	+	0	NA	intron (NM_001096, intron 18 of 28)	intron (NM_001096, intron 18 of 28)	-20427	NM_018143	55175		NM_018143	ENSG00000178502	KLHL11	-	kelch like family member 11	protein-coding
96495	chr17	40306721	40307880	+	0	NA	Intergenic	Intergenic	-1880	NM_000964	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
21843	chr1	207360601	207360800	+	0	NA	non-coding (NR_125349, exon 11 of 11)	non-coding (NR_125349, exon 11 of 11)	39022	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
188140	chr5	150402901	150403450	+	0	NA	non-coding (NR_157074, exon 5 of 7)	non-coding (NR_157074, exon 5 of 7)	9581	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
137854	chr2	200816371	200817200	+	0	NA	intron (NM_001207068, intron 5 of 11)	AluSz6|SINE|Alu	4399	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
142726	chr20	10034571	10036000	+	0	NA	5' UTR (NM_001303472, exon 1 of 11)	5' UTR (NM_001303472, exon 1 of 11)	298	NM_198798	63926		NM_022096	ENSG00000132623	ANKEF1	ANKRD5	ankyrin repeat and EF-hand domain containing 1	protein-coding
172117	chr4	1166651	1168180	+	0	NA	3' UTR (NM_001199021, exon 8 of 8)	3' UTR (NM_001199021, exon 8 of 8)	5168	NM_012445	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
197105	chr6	57110201	57110600	+	0	NA	TTS (NM_001257273)	TTS (NM_001257273)	20212	NM_001257273	26036		NM_015555	ENSG00000112200	ZNF451	COASTER|ZATT|dJ417I1.1	zinc finger protein 451	protein-coding
220715	chr8	101966471	101966630	+	0	NA	intron (NM_001040625, intron 3 of 6)	L1PA4|LINE|L1	-17882	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
69196	chr14	92668051	92669050	+	0	NA	intron (NM_024832, intron 7 of 9)	intron (NM_024832, intron 7 of 9)	80077	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
178535	chr4	151013601	151013800	+	0	NA	intron (NM_001367550, intron 2 of 56)	intron (NM_001367550, intron 2 of 56)	1567	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
165099	chr3	71510521	71510780	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	31439	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
225193	chr9	34050901	34051100	+	0	NA	Intergenic	AluY|SINE|Alu	-1801	NM_001370059	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
20139	chr1	192572651	192572750	+	0	NA	Intergenic	Intergenic	-3073	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
73690	chr15	44904651	44904950	+	0	NA	Intergenic	Intergenic	-20106	NR_146394	653381		NR_146393	ENSG00000290387	SORD2P	SORD2	sorbitol dehydrogenase 2, pseudogene	pseudo
115741	chr19	16283001	16284180	+	0	NA	Intergenic	Intergenic	-41236	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
133003	chr2	111597301	111597530	+	0	NA	Intergenic	Intergenic	-102254	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
75096	chr15	64447921	64448380	+	0	NA	intron (NR_135855, intron 11 of 11)	intron (NR_135855, intron 11 of 11)	-12428	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
234937	chrX	38329471	38329630	+	0	NA	Intergenic	MER51A|LTR|ERV1	-2041	NM_001367249	6103		NM_000328	ENSG00000156313	RPGR	COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15	retinitis pigmentosa GTPase regulator	protein-coding
104939	chr17	81934971	81935130	+	0	NA	exon (NM_006907, exon 4 of 7)	exon (NM_006907, exon 4 of 7)	2250	NM_153824	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
18258	chr1	161066421	161067100	+	0	NA	intron (NM_001025598, intron 1 of 11)	MER96|DNA|hAT-Tip100	3131	NM_181720	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
22062	chr1	211328471	211329250	+	0	NA	intron (NM_001319207, intron 1 of 10)	MIR|SINE|MIR	2027	NM_001033910	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
131350	chr2	96164601	96165500	+	0	NA	Intergenic	Intergenic	-19610	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
5399	chr1	25497371	25497730	+	0	NA	intron (NM_001282564, intron 8 of 8)	intron (NM_001282564, intron 8 of 8)	-46056	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
165142	chr3	71784621	71785800	+	0	NA	promoter-TSS (NM_021935)	promoter-TSS (NM_021935)	-62	NM_021935	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
216579	chr8	21969171	21969330	+	0	NA	intron (NM_001362802, intron 2 of 26)	intron (NM_001362802, intron 2 of 26)	49588	NM_001362802	23039		NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
48643	chr12	10402151	10402550	+	0	NA	intron (NM_001199805, intron 4 of 12)	L1PREC2|LINE|L1	7407	NM_013431	8302		NM_013431	ENSG00000183542	KLRC4	NKG2-F|NKG2F	killer cell lectin like receptor C4	protein-coding
53417	chr12	64760751	64761280	+	0	NA	intron (NM_001330187, intron 1 of 13)	intron (NM_001330187, intron 1 of 13)	1518	NM_001330187	23329		NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
28170	chr10	43667271	43667580	+	0	NA	intron (NR_038867, intron 1 of 4)	CpG	-18544	NM_006973	7580		NM_006973	ENSG00000169740	ZNF32	KOX30|ZNF637|Zfp637	zinc finger protein 32	protein-coding
213517	chr7	139074951	139075980	+	0	NA	intron (NM_020119, intron 6 of 12)	AluJb|SINE|Alu	-31308	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
74815	chr15	63477471	63477630	+	0	NA	Intergenic	AluSq|SINE|Alu	-26961	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
73665	chr15	44725501	44725830	+	0	NA	Intergenic	AluJr|SINE|Alu	-3323	NR_125376	100419583		NR_125376		LOC100419583	-	ring finger protein 4 pseudogene	pseudo
10595	chr1	67425951	67426480	+	0	NA	exon (NM_001018068, exon 2 of 8)	exon (NM_001018068, exon 2 of 8)	4187	NM_001018067	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
171203	chr3	195711721	195715050	+	0	NA	Intergenic	Intergenic	-7497	NM_152673	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
3134	chr1	12450401	12450620	+	0	NA	intron (NM_018156, intron 64 of 68)	MER47B|DNA|TcMar-Tigger	-56736	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
105858	chr18	3059001	3059900	+	0	NA	Intergenic	Intergenic	-46306	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
145762	chr20	45316201	45316730	+	0	NA	intron (NM_014276, intron 10 of 11)	intron (NM_014276, intron 10 of 11)	-7936	NM_003833	8785		NM_003833	ENSG00000124159	MATN4	-	matrilin 4	protein-coding
155492	chr22	38567301	38567500	+	0	NA	intron (NM_007068, intron 3 of 13)	MER20|DNA|hAT-Charlie	1009	NM_001278208	11144		NM_007068	ENSG00000100206	DMC1	DMC1H|LIM15|dJ199H16.1	DNA meiotic recombinase 1	protein-coding
115412	chr19	15294421	15295150	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-14334	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
182876	chr5	69911421	69912180	+	0	NA	intron (NR_029426, intron 4 of 9).2	intron (NR_029426, intron 4 of 9).2	-7780	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
100931	chr17	64475001	64475200	+	0	NA	Intergenic	AluSx1|SINE|Alu	21954	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
147526	chr20	59258071	59258430	+	0	NA	3' UTR (NM_001384354, exon 8 of 8)	3' UTR (NM_001384354, exon 8 of 8)	-42361	NM_207032	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
45408	chr11	118349371	118349730	+	0	NA	intron (NM_000073, intron 2 of 6)	MER5A1|DNA|hAT-Charlie	5206	NM_000073	917		NM_000073	ENSG00000160654	CD3G	CD3-GAMMA|CD3GAMMA|IMD17|T3G	CD3 gamma subunit of T-cell receptor complex	protein-coding
224598	chr9	20370021	20370280	+	0	NA	intron (NM_001286691, intron 5 of 10)	intron (NM_001286691, intron 5 of 10)	41088	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
58244	chr12	128763321	128763780	+	0	NA	Intergenic	Intergenic	60408	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
163911	chr3	52536161	52537980	+	0	NA	intron (NM_001124767, intron 1 of 1)	intron (NM_001124767, intron 1 of 1)	465	NM_001124767	440957		NM_001124767	ENSG00000168273	UQCC5	C3orf78|SMIM4	ubiquinol-cytochrome c reductase complex assembly factor 5	protein-coding
178652	chr4	152454301	152454800	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	34866	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
126896	chr2	32363251	32363550	+	0	NA	intron (NM_016252, intron 1 of 73)	intron (NM_016252, intron 1 of 73)	6184	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
45160	chr11	117205621	117206400	+	0	NA	exon (NM_004716, exon 17 of 17)	exon (NM_004716, exon 17 of 17)	-4096	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
20337	chr1	197773651	197773950	+	0	NA	intron (NR_125340, intron 1 of 19)	intron (NR_125340, intron 1 of 19)	1680	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
175218	chr4	56823921	56824380	+	0	NA	Intergenic	LTR50|LTR|ERVL	-2281	NM_021114	6691		NM_021114	ENSG00000128040	SPINK2	HUSI-II|SPGF29	serine peptidase inhibitor Kazal type 2	protein-coding
10560	chr1	67171971	67172430	+	0	NA	intron (NM_144701, intron 3 of 10)	intron (NM_144701, intron 3 of 10)	5746	NM_144701	149233		NM_144701	ENSG00000162594	IL23R	PSORS7	interleukin 23 receptor	protein-coding
232458	chr9	136153621	136153880	+	0	NA	Intergenic	MIR|SINE|MIR	34730	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
223056	chr8	143381221	143381930	+	0	NA	exon (NM_052924, exon 13 of 15)	exon (NM_052924, exon 13 of 15)	12699	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
39846	chr11	62371971	62372130	+	0	NA	intron (NM_001083926, intron 4 of 6)	intron (NM_001083926, intron 4 of 6)	34602	NM_001083926	80150		NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase and isoaspartyl peptidase 1	protein-coding
7838	chr1	36318921	36319630	+	0	NA	exon (NM_001162530, exon 12 of 16)	exon (NM_001162530, exon 12 of 16)	4370	NM_001304762	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
13631	chr1	116432901	116433100	+	0	NA	intron (NR_125972, intron 2 of 3)	MIRb|SINE|MIR	-14378	NR_027646	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
86304	chr16	58683501	58683700	+	0	NA	intron (NM_001369609, intron 1 of 10)	intron (NM_001369609, intron 1 of 10)	731	NM_001308384	55238		NM_018231	ENSG00000103042	SLC38A7	SNAT7	solute carrier family 38 member 7	protein-coding
236045	chrX	55704951	55705280	+	0	NA	Intergenic	L1PA7|LINE|L1	-12634	NM_016656	10325		NM_006064	ENSG00000083750	RRAGB	RAGB|bA465E19.1	Ras related GTP binding B	protein-coding
233161	chr9	137177751	137177850	+	0	NA	intron (NM_013366, intron 10 of 12)	MLT1C|LTR|ERVL-MaLR	-5744	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
187428	chr5	142019251	142019350	+	0	NA	Intergenic	AluY|SINE|Alu	-6273	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
111255	chr19	3530721	3531450	+	0	NA	intron (NM_001136198, intron 7 of 12)	intron (NM_001136198, intron 7 of 12)	-8072	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
213336	chr7	135414951	135415150	+	0	NA	intron (NM_013316, intron 4 of 10)	intron (NM_013316, intron 4 of 10)	95052	NM_001190849	4850		NM_013316	ENSG00000080802	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex subunit 4	protein-coding
235990	chrX	54124121	54124530	+	0	NA	intron (NM_017848, intron 9 of 15)	L1HS|LINE|L1	58929	NM_001300788	54954		NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120 member C	protein-coding
178902	chr4	158255771	158255930	+	0	NA	TTS (NM_018342)	TTS (NM_018342)	45364	NM_018342	55314		NM_018342	ENSG00000164124	TMEM144	SLC35G7	transmembrane protein 144	protein-coding
45195	chr11	117597171	117597330	+	0	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	199966	NM_020693	57453		NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
18778	chr1	167515671	167517160	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	2114	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
157849	chr22	48567301	48567500	+	0	NA	intron (NM_001082967, intron 1 of 3)	intron (NM_001082967, intron 1 of 3)	-8940	NM_015381	25817		NM_015381	ENSG00000219438	TAFA5	FAM19A5|QLLK5208|TAFA-5|UNQ5208	TAFA chemokine like family member 5	protein-coding
37681	chr11	27499251	27500130	+	0	NA	intron (NM_018362, intron 3 of 4)	AluY|SINE|Alu	7079	NM_018362	55327		NM_018362	ENSG00000148943	LIN7C	LIN-7-C|LIN-7C|MALS-3|MALS3|VELI3	lin-7 homolog C, crumbs cell polarity complex component	protein-coding
148221	chr20	63588501	63589730	+	0	NA	3' UTR (NM_012384, exon 10 of 10)	3' UTR (NM_012384, exon 10 of 10)	-14876	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
239432	chrY	56691821	56692650	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-262020	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
2427	chr1	9601101	9601630	+	0	NA	exon (NM_001010866, exon 5 of 6)	exon (NM_001010866, exon 5 of 6)	12454	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
65240	chr14	49879751	49880650	+	0	NA	Intergenic	AluSq|SINE|Alu	-12882	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
235646	chrX	48520351	48520680	+	0	NA	3' UTR (NM_022825, exon 13 of 13)	3' UTR (NM_022825, exon 13 of 13)	-1293	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
403	chr1	1061301	1061950	+	0	NA	intron (NR_148960, intron 2 of 3)	FLAM_A|SINE|Alu	1891	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
149931	chr21	36287421	36287880	+	0	NA	intron (NM_001320714, intron 32 of 36)	AluSx4|SINE|Alu	-32539	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
62363	chr13	99218771	99219650	+	0	NA	intron (NR_026644, intron 1 of 8)	intron (NR_026644, intron 1 of 8)	18356	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
135140	chr2	157442101	157442680	+	0	NA	intron (NM_004288, intron 1 of 7)	intron (NM_004288, intron 1 of 7)	1699	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
9740	chr1	53240051	53240150	+	0	NA	intron (NR_038953, intron 1 of 2)	MIRb|SINE|MIR	1490	NR_038953	100507564		NR_038953	ENSG00000226754	MAGOH-DT	-	MAGOH divergent transcript	ncRNA
177160	chr4	108141451	108142150	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	24997	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
79709	chr16	1310791	1311380	+	0	NA	intron (NM_003345, intron 1 of 6)	intron (NM_003345, intron 1 of 6)	1449	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
60806	chr13	45334131	45335500	+	0	NA	3' UTR (NM_001286273, exon 5 of 5)	3' UTR (NM_001286273, exon 5 of 5)	1632	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
161352	chr3	40452501	40453900	+	0	NA	non-coding (NR_040100, exon 1 of 4)	non-coding (NR_040100, exon 1 of 4)	108	NR_040100	285266		NR_040100	ENSG00000223797	ENTPD3-AS1	-	ENTPD3 antisense RNA 1	ncRNA
19007	chr1	169595871	169596050	+	0	NA	exon (NM_003005, exon 12 of 17)	exon (NM_003005, exon 12 of 17)	-9479	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
49824	chr12	32106151	32108100	+	0	NA	non-coding (NR_148725, exon 1 of 10)	non-coding (NR_148725, exon 1 of 10)	278	NR_148725	636		NM_001714	ENSG00000151746	BICD1	BICD|bic-D 1	BICD cargo adaptor 1	protein-coding
183088	chr5	74326801	74327400	+	0	NA	intron (NR_105010, intron 2 of 2)	intron (NR_105010, intron 2 of 2)	4614	NR_105010	101929082		NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA
30625	chr10	80260671	80260980	+	0	NA	Intergenic	Intergenic	13067	NR_136612	100130698		NR_136612		LOC100130698	-	uncharacterized LOC100130698	ncRNA
126437	chr2	27954501	27955550	+	0	NA	intron (NM_199193, intron 4 of 13)	intron (NM_199193, intron 4 of 13)	-41342	NR_036230	100422965		NR_036230	ENSG00000265321	MIR4263	-	microRNA 4263	ncRNA
211471	chr7	105103551	105104180	+	0	NA	intron (NM_182931, intron 17 of 26)	AluSx3|SINE|Alu	89660	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
98727	chr17	48018351	48018750	+	0	NA	Intergenic	Intergenic	-14332	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
167298	chr3	128673751	128674100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-23107	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
44420	chr11	104162321	104162580	+	0	NA	intron (NM_025208, intron 1 of 6)	intron (NM_025208, intron 1 of 6)	1697	NM_033135	80310		NM_025208	ENSG00000170962	PDGFD	IEGF|MSTP036|SCDGF-B|SCDGFB	platelet derived growth factor D	protein-coding
159930	chr3	17030221	17030700	+	0	NA	intron (NM_015184, intron 3 of 5)	intron (NM_015184, intron 3 of 5)	97264	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
231423	chr9	131232071	131232430	+	0	NA	intron (NM_001318325, intron 9 of 10)	intron (NM_001318325, intron 9 of 10)	42111	NM_001318325	8021		NM_005085	ENSG00000126883	NUP214	CAIN|CAN|IIAE9	nucleoporin 214	protein-coding
102755	chr17	76274371	76275600	+	0	NA	intron (NM_032134, intron 18 of 18)	intron (NM_032134, intron 18 of 18)	9637	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
107632	chr18	48945901	48946630	+	0	NA	intron (NM_005904, intron 2 of 3)	intron (NM_005904, intron 2 of 3)	3068	NM_001190822	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
50267	chr12	46269801	46271280	+	0	NA	Intergenic	MIRb|SINE|MIR	-1497	NM_001278388	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
18941	chr1	168512751	168513750	+	0	NA	Intergenic	Intergenic	-17606	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
219129	chr8	66037351	66037530	+	0	NA	intron (NR_146171, intron 1 of 6)	intron (NR_146171, intron 1 of 6)	15887	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
108424	chr18	69948901	69949950	+	0	NA	intron (NM_006566, intron 1 of 6)	intron (NM_006566, intron 1 of 6)	-1552	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
89963	chr16	89791501	89791700	+	0	NA	intron (NM_001286167, intron 13 of 42)	intron (NM_001286167, intron 13 of 42)	25047	NM_001286167	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
158220	chr22	50269271	50269430	+	0	NA	intron (NM_002751, intron 1 of 11)	intron (NM_002751, intron 1 of 11)	1030	NM_002751	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
11494	chr1	90835321	90836700	+	0	NA	non-coding (NR_147932, exon 1 of 2)	non-coding (NR_147932, exon 1 of 2)	151	NR_147932	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
218355	chr8	43059271	43059630	+	0	NA	intron (NM_002027, intron 2 of 8)	intron (NM_002027, intron 2 of 8)	3127	NM_002027	2339		NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, subunit alpha	protein-coding
114848	chr19	13844121	13845400	+	0	NA	Intergenic	Intergenic	-1842	NR_036515	284454		NR_036515		MIR23AHG	Smyca	miR-23a/27a/24-2 cluster host gene	ncRNA
229691	chr9	124653171	124653330	+	0	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	-5186	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
190834	chr6	1598651	1599150	+	0	NA	Intergenic	CpG	-6631	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
57511	chr12	122110901	122111500	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	32444	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
221152	chr8	119812071	119812230	+	0	NA	intron (NM_003184, intron 3 of 25)	LTR56|LTR|ERV1	20691	NM_003184	6873		NM_003184	ENSG00000064313	TAF2	CIF150|MRT40|TAF2B|TAFII150	TATA-box binding protein associated factor 2	protein-coding
216546	chr8	21790051	21790150	+	0	NA	Intergenic	CpG-27046	-1225	NM_001165038	2675		NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
26282	chr10	14878111	14880000	+	0	NA	5' UTR (NM_024670, exon 1 of 5)	5' UTR (NM_024670, exon 1 of 5)	155	NM_024670	79723		NM_024670	ENSG00000152455	SUV39H2	KMT1B	SUV39H2 histone lysine methyltransferase	protein-coding
4476	chr1	21435971	21436330	+	0	NA	Intergenic	Intergenic	-3987	NM_001377492	84224		NM_032264	ENSG00000142794	NBPF3	AE2	NBPF member 3	protein-coding
203665	chr7	997171	998030	+	0	NA	non-coding (NR_146966, exon 3 of 3)	non-coding (NR_146966, exon 3 of 3)	14419	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
228035	chr9	95907771	95908030	+	0	NA	intron (NM_001375291, intron 4 of 18)	L2|LINE|L2	-31923	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
186933	chr5	139638401	139639150	+	0	NA	Intergenic	Intergenic	-8524	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
94002	chr17	23068951	23069050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	545889	NM_001190452	100462977		NM_001190452		MTRNR2L1	HN1	MT-RNR2 like 1 (pseudogene)	pseudo
78303	chr15	90916201	90916600	+	0	NA	intron (NR_135503, intron 20 of 22)	intron (NR_135503, intron 20 of 22)	12210	NR_135504	4122		NM_006122	ENSG00000196547	MAN2A2	MANA2X|alpha-MIIx	mannosidase alpha class 2A member 2	protein-coding
192764	chr6	26468271	26468830	+	0	NA	3' UTR (NM_001197233, exon 7 of 7)	3' UTR (NM_001197233, exon 7 of 7)	10595	NM_078476	11120		NM_007049	ENSG00000112763	BTN2A1	BK14H9.1|BT2.1|BTF1|BTN2.1|DJ3E1.1	butyrophilin subfamily 2 member A1	protein-coding
219994	chr8	89981621	89981880	+	0	NA	intron (NM_002485, intron 2 of 15)	intron (NM_002485, intron 2 of 15)	2917	NM_002485	4683		NM_002485	ENSG00000104320	NBN	AT-V1|AT-V2|ATV|NBS|NBS1|P95	nibrin	protein-coding
75326	chr15	65311671	65312030	+	0	NA	Intergenic	Intergenic	7173	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
20906	chr1	202168821	202169080	+	0	NA	intron (NR_002930, intron 2 of 21)	intron (NR_002930, intron 2 of 21)	899	NR_002930	148713		NR_002930	ENSG00000293457	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase receptor type V, pseudogene	pseudo
32526	chr10	102917101	102919500	+	0	NA	promoter-TSS (NM_199076)	promoter-TSS (NM_199076)	6	NM_199076	54805		NM_017649	ENSG00000148842	CNNM2	ACDP2|HOMG6|HOMGSMR	cyclin and CBS domain divalent metal cation transport mediator 2	protein-coding
100759	chr17	63965971	63966130	+	0	NA	intron (NM_000334, intron 8 of 23)	intron (NM_000334, intron 8 of 23)	6868	NM_000334	6329		NM_000334	ENSG00000007314	SCN4A	CMS16|CMYP22A|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium voltage-gated channel alpha subunit 4	protein-coding
82241	chr16	15053501	15054150	+	0	NA	intron (NM_173474, intron 1 of 9).2	AluSz|SINE|Alu	2249	NM_173474	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
230757	chr9	128896201	128896600	+	0	NA	intron (NM_019594, intron 2 of 3)	L1ME3C|LINE|L1	-13877	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
23628	chr1	230279751	230280050	+	0	NA	3' UTR (NM_004481, exon 16 of 16)	3' UTR (NM_004481, exon 16 of 16)	146432	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
164219	chr3	56920851	56921150	+	0	NA	intron (NM_001377407, intron 3 of 12)	AluY|SINE|Alu	-4564	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
98915	chr17	48603801	48604430	+	0	NA	intron (NR_033204, intron 2 of 2)	intron (NR_033204, intron 2 of 2)	871	NM_001369397	3216		NM_018952	ENSG00000108511	HOXB6	HOX2|HOX2B|HU-2|Hox-2.2	homeobox B6	protein-coding
162584	chr3	48681101	48681300	+	0	NA	intron (NM_184231, intron 5 of 12)	intron (NM_184231, intron 5 of 12)	4715	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
167266	chr3	128610371	128610930	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-34564	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
31122	chr10	89390571	89390730	+	0	NA	Intergenic	Intergenic	-1896	NM_001270930	3434		NM_001548	ENSG00000185745	IFIT1	C56|G10P1|IFI-56|IFI-56K|IFI56|IFIT-1|IFNAI1|ISG56|P56|RNM561	interferon induced protein with tetratricopeptide repeats 1	protein-coding
96286	chr17	39926151	39927000	+	0	NA	5' UTR (NM_001320801, exon 1 of 6)	5' UTR (NM_001320801, exon 1 of 6)	271	NM_001320801	94103		NM_016471	ENSG00000172057	ORMDL3	-	ORMDL sphingolipid biosynthesis regulator 3	protein-coding
176708	chr4	101153771	101153930	+	0	NA	intron (NM_001130692, intron 2 of 11)	intron (NM_001130692, intron 2 of 11)	87022	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
42544	chr11	71639251	71640280	+	0	NA	Intergenic	CpG	-56890	NM_001005405	440051		NM_001005405	ENSG00000204571	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
97483	chr17	43791521	43791850	+	0	NA	Intergenic	Intergenic	11250	NM_001136483	284067		NM_001136483	ENSG00000231256	CFAP97D1	C17orf105	CFAP97 domain containing 1	protein-coding
15758	chr1	151158251	151158800	+	0	NA	intron (NM_001204848, intron 1 of 6)	intron (NM_001204848, intron 1 of 6)	1876	NM_024575	79626		NM_024575	ENSG00000163154	TNFAIP8L2	TIPE2	TNF alpha induced protein 8 like 2	protein-coding
126868	chr2	32009051	32012300	+	0	NA	promoter-TSS (NM_001371915)	promoter-TSS (NM_001371915)	89	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
227519	chr9	91411171	91411530	+	0	NA	intron (NM_001290000, intron 1 of 1)	intron (NM_001290000, intron 1 of 1)	12482	NM_005384	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
12696	chr1	109486001	109486480	+	0	NA	intron (NM_001350177, intron 3 of 11)	intron (NM_001350177, intron 3 of 11)	2281	NM_001350177	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
191711	chr6	13674851	13675150	+	0	NA	intron (NM_005493, intron 2 of 13)	L1MCa|LINE|L1	36835	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
224566	chr9	19473151	19473250	+	0	NA	Intergenic	AluSq2|SINE|Alu	64191	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
76189	chr15	73426521	73426780	+	0	NA	Intergenic	Intergenic	-16514	NM_001042367	283677		NM_001042367	ENSG00000183324	REC114	C15orf60|CT147|OOMD10|OZEMA10	REC114 meiotic recombination protein	protein-coding
56719	chr12	120110301	120111380	+	0	NA	intron (NM_006861, intron 1 of 5)	intron (NM_006861, intron 1 of 5)	5913	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
138447	chr2	206161401	206161830	+	0	NA	promoter-TSS (NR_002589)	promoter-TSS (NR_002589)	-266	NR_002589	26798		NR_002589	ENSG00000207047	SNORD51	RNU51|U51	small nucleolar RNA, C/D box 51	snoRNA
119144	chr19	39380301	39381380	+	0	NA	intron (NM_001384588, intron 12 of 13)	intron (NM_001384588, intron 12 of 13)	10266	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
208449	chr7	66923771	66923930	+	0	NA	intron (NM_017994, intron 1 of 6)	AluSz|SINE|Alu	2625	NM_017994	55069		NM_017994	ENSG00000106609	TMEM248	C7orf42	transmembrane protein 248	protein-coding
42052	chr11	67459821	67460500	+	0	NA	non-coding (NR_166529, exon 4 of 4)	non-coding (NR_166529, exon 4 of 4)	4806	NM_001300895	57010		NM_145200	ENSG00000175544	CABP4	CRSD|CSNB2B	calcium binding protein 4	protein-coding
90902	chr17	2447351	2447850	+	0	NA	intron (NM_024086, intron 6 of 9)	SVA_D|Retroposon|SVA	-32164	NR_028335	284009		NM_001025459		LOC284009	-	uncharacterized LOC284009	ncRNA
106225	chr18	11871501	11871900	+	0	NA	intron (NM_182978, intron 9 of 11)	intron (NM_182978, intron 9 of 11)	13947	NM_001261444	2774		NM_002071	ENSG00000141404	GNAL	DYT25|HG1O	G protein subunit alpha L	protein-coding
168561	chr3	148943501	148943850	+	0	NA	Intergenic	Intergenic	-47733	NM_001184721	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
96073	chr17	39600351	39601180	+	0	NA	Intergenic	Intergenic	7155	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
24006	chr1	235250701	235250900	+	0	NA	intron (NM_016374, intron 6 of 23)	intron (NM_016374, intron 6 of 23)	-60684	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
203801	chr7	1272201	1273150	+	0	NA	Intergenic	Intergenic	39803	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
90371	chr17	1255471	1255630	+	0	NA	Intergenic	AluJb|SINE|Alu	-14894	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
124189	chr19	56171601	56172130	+	0	NA	Intergenic	L1MA10|LINE|L1	-4143	NM_033106	85569		NM_033106	ENSG00000197487	GALP	GAL	galanin like peptide	protein-coding
198781	chr6	108873401	108873600	+	0	NA	intron (NM_001286609, intron 3 of 16)	intron (NM_001286609, intron 3 of 16)	25078	NM_032131	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
25411	chr10	6555971	6556600	+	0	NA	intron (NM_001323265, intron 1 of 17)	AluJr4|SINE|Alu	23991	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
149759	chr21	34671151	34671250	+	0	NA	intron (NM_053277, intron 1 of 5)	intron (NM_053277, intron 1 of 5)	2206	NM_001317009	54102		NM_053277	ENSG00000159212	CLIC6	CLIC1L	chloride intracellular channel 6	protein-coding
21419	chr1	205315971	205316880	+	0	NA	intron (NM_030952, intron 1 of 6)	L2c|LINE|L2	5320	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
30272	chr10	75163051	75163350	+	0	NA	intron (NM_144660, intron 2 of 4)	AluSg7|SINE|Alu	-46954	NM_001324087	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
64314	chr14	23577151	23577950	+	0	NA	5' UTR (NM_032452, exon 3 of 7)	5' UTR (NM_032452, exon 3 of 7)	1240	NM_001146028	84502		NM_032452	ENSG00000092051	JPH4	JP4|JPHL1	junctophilin 4	protein-coding
192663	chr6	26206101	26206480	+	0	NA	Intergenic	L1MC5a|LINE|L1	1680	NM_003545	8367		NM_003545	ENSG00000276966	H4C5	H4-16|H4/j|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C6|H4C8|H4C9|H4FJ|HIST1H4E|TEBIVANED3|TEVANED3	H4 clustered histone 5	protein-coding
237714	chrX	124736251	124737430	+	0	NA	intron (NM_001163279, intron 4 of 31)	intron (NM_001163279, intron 4 of 31)	226977	NM_001163279	10178		NM_014253	ENSG00000009694	TENM1	ODZ1|ODZ3|TEN-M1|TEN1|TNM|TNM1|ten-1	teneurin transmembrane protein 1	protein-coding
44321	chr11	102394401	102395450	+	0	NA	Intergenic	AluSq2|SINE|Alu	47551	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
61835	chr13	76397201	76397640	+	0	NA	Intergenic	L1M8|LINE|L1	-462288	NR_047491	100861545		NR_047491	ENSG00000261206	LINC00561	-	long intergenic non-protein coding RNA 561	ncRNA
112833	chr19	7528571	7528930	+	0	NA	intron (NM_020533, intron 8 of 13)	intron (NM_020533, intron 8 of 13)	-5414	NM_006702	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
120855	chr19	45524901	45525300	+	0	NA	intron (NM_003370, intron 11 of 12)	intron (NM_003370, intron 11 of 12)	17621	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
143995	chr20	32977671	32977830	+	0	NA	Intergenic	Intergenic	26683	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
161250	chr3	39238151	39238450	+	0	NA	Intergenic	Intergenic	41736	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
62803	chr13	109745921	109746380	+	0	NA	Intergenic	Intergenic	17876	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
188415	chr5	154188471	154188630	+	0	NA	Intergenic	L2b|LINE|L2	-2183	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
60366	chr13	40924921	40925180	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-3276	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
31	chr1	180501	181200	+	0	NA	Intergenic	(ACCCTA)n|Simple_repeat|Simple_repeat	-1538	NR_148357	102725121		NR_148357		DDX11L17	-	DEAD/H-box helicase 11 like 17 (pseudogene)	pseudo
181618	chr5	44806801	44807000	+	0	NA	intron (NR_109863, intron 1 of 3)	L2a|LINE|L2	1893	NR_109865	100506674		NR_109862		MRPS30-DT	BRCAT54	MRPS30 divergent transcript	ncRNA
185953	chr5	133025671	133027250	+	0	NA	promoter-TSS (NM_001308130)	promoter-TSS (NM_001308130)	89	NM_001300818	54819		NM_017665	ENSG00000155329	ZCCHC10	-	zinc finger CCHC-type containing 10	protein-coding
151947	chr22	19120451	19120550	+	0	NA	intron (NM_001184781, intron 1 of 9)	intron (NM_001184781, intron 1 of 9)	1912	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
107783	chr18	51074451	51074750	+	0	NA	intron (NM_005359, intron 10 of 11)	L1MC1|LINE|L1	44387	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
47651	chr12	6294951	6295450	+	0	NA	Intergenic	Intergenic	-15132	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
165777	chr3	105779971	105780330	+	0	NA	intron (NM_001321811, intron 3 of 16)	AluSq2|SINE|Alu	87441	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
140413	chr2	233103051	233103750	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	43058	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
110763	chr19	2387821	2388280	+	0	NA	intron (NM_182973, intron 1 of 17)	L2|LINE|L2	2785	NM_182973	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
229874	chr9	126490221	126490650	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-79931	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
127662	chr2	43167701	43168100	+	0	NA	Intergenic	Intergenic	58706	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
87134	chr16	69129001	69129200	+	0	NA	intron (NM_001002847, intron 1 of 2)	intron (NM_001002847, intron 1 of 2)	3059	NM_001366604	113455421		NM_001002847	ENSG00000286140	DERPC	-	DERPC proline and glycine rich nuclear protein	protein-coding
181485	chr5	42954601	42954800	+	0	NA	Intergenic	AluJr|SINE|Alu	38633	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
188688	chr5	157281901	157282480	+	0	NA	intron (NM_014376, intron 1 of 30)	MSTB|LTR|ERVL-MaLR	12866	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
155165	chr22	37685871	37687200	+	0	NA	intron (NM_024313, intron 1 of 5)	CpG	192	NM_024313	79159		NM_024313	ENSG00000273899	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
230281	chr9	127933021	127933750	+	0	NA	Intergenic	Intergenic	-2608	NM_001135219	138429		NM_173492	ENSG00000167103	PIP5KL1	PIPKH	phosphatidylinositol-4-phosphate 5-kinase like 1	protein-coding
158322	chr22	50436601	50437180	+	0	NA	intron (NM_001351648, intron 14 of 22)	G-rich|Low_complexity|Low_complexity	29448	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
236469	chrX	71606401	71607400	+	0	NA	intron (NM_052957, intron 9 of 12)	intron (NM_052957, intron 9 of 12)	11611	NM_001142797	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
175379	chr4	70690651	70691030	+	0	NA	TTS (NM_020368)	TTS (NM_020368)	2308	NM_020368	57050		NM_020368	ENSG00000132467	UTP3	CRL1|CRLZ1|SAS10	UTP3 small subunit processome component	protein-coding
185603	chr5	131417121	131417850	+	0	NA	Intergenic	Intergenic	153432	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
24244	chr1	236275151	236275650	+	0	NA	intron (NM_019891, intron 1 of 15)	MER21C|LTR|ERVL	6558	NM_019891	56605		NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding
106467	chr18	14130401	14130800	+	0	NA	intron (NM_145287, intron 1 of 2)	intron (NM_145287, intron 1 of 2)	1835	NM_145287	162655		NM_145287	ENSG00000175322	ZNF519	HsT2362	zinc finger protein 519	protein-coding
164651	chr3	66497501	66498550	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	2029	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
29911	chr10	73166201	73166600	+	0	NA	intron (NM_007265, intron 1 of 13)	L1MA3|LINE|L1	1608	NM_007265	11319		NM_007265	ENSG00000122882	ECD	GCR2|HSGT1|SGT1	ecdysoneless cell cycle regulator	protein-coding
70688	chr14	103102321	103102830	+	0	NA	exon (NM_001077594, exon 2 of 11)	exon (NM_001077594, exon 2 of 11)	2431	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
218187	chr8	41995201	41996080	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-56110	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
239484	chrY	56744771	56745200	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-209270	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
105394	chr17	82747301	82747700	+	0	NA	intron (NM_022158, intron 4 of 5)	AluSc|SINE|Alu	-4565	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
173052	chr4	5710721	5711580	+	0	NA	promoter-TSS (NM_001306092)	promoter-TSS (NM_001306092)	-51	NM_001306090	2121		NM_014556	ENSG00000072840	EVC	DWF-1|EVC1|EVCL	EvC ciliary complex subunit 1	protein-coding
46892	chr11	134050271	134051300	+	0	NA	Intergenic	Intergenic	-18140	NM_001205329	83700		NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
228906	chr9	113059051	113059350	+	0	NA	Intergenic	Intergenic	-2476	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
120961	chr19	45704201	45704600	+	0	NA	TTS (NM_001163377)	TTS (NM_001163377)	10878	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
46923	chr11	134274121	134274580	+	0	NA	Intergenic	Intergenic	-2029	NM_001080407	112937		NM_138416	ENSG00000166105	GLB1L3	-	galactosidase beta 1 like 3	protein-coding
237613	chrX	123984751	123985050	+	0	NA	intron (NM_001282418, intron 2 of 33)	AluJb|SINE|Alu	23194	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
59299	chr13	24268571	24268730	+	0	NA	intron (NM_153023, intron 3 of 11)	AluSx|SINE|Alu	-2037	NM_001286794	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
185704	chr5	132009871	132010230	+	0	NA	intron (NM_001205250, intron 1 of 20)	intron (NM_001205250, intron 1 of 20)	1608	NM_001205247	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
164901	chr3	71119301	71119880	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	10996	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
150138	chr21	38126701	38126900	+	0	NA	intron (NR_026839, intron 2 of 2)	intron (NR_026839, intron 2 of 2)	5349	NR_026838	84677		NM_032589	ENSG00000198054	DSCR8	C21orf65|CT25.1a|CT25.1b|MMA-1|MMA-1a|MMA-1b|MMA1|MTAG2	Down syndrome critical region 8	ncRNA
230000	chr9	126877271	126877680	+	0	NA	intron (NM_001099270, intron 1 of 1)	intron (NM_001099270, intron 1 of 1)	16836	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
67979	chr14	74906651	74906750	+	0	NA	3' UTR (NM_031464, exon 12 of 12)	3' UTR (NM_031464, exon 12 of 12)	15742	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
109413	chr19	685351	686330	+	0	NA	exon (NM_001308209, exon 5 of 5)	exon (NM_001308209, exon 5 of 5)	9448	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
211117	chr7	102520201	102520900	+	0	NA	Intergenic	AluSz|SINE|Alu	-2773	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
5827	chr1	26694051	26694150	+	0	NA	promoter-TSS (NR_135804)	promoter-TSS (NR_135804)	31	NR_135804	101928728		NR_135804	ENSG00000260063	LOC101928728	-	uncharacterized LOC101928728	ncRNA
228656	chr9	107272051	107272550	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-10979	NM_002874	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
66548	chr14	61894471	61894730	+	0	NA	intron (NM_001367657, intron 2 of 6)	intron (NM_001367657, intron 2 of 6)	-33095	NM_001367663	83851		NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r	synaptotagmin 16	protein-coding
224178	chr9	5327091	5327850	+	0	NA	Intergenic	L1P2|LINE|L1	12406	NM_006911	6013		NM_006911	ENSG00000107018	RLN1	H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2	relaxin 1	protein-coding
128150	chr2	48418921	48419430	+	0	NA	Intergenic	Intergenic	-21591	NM_001135629	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
31374	chr10	93893701	93894350	+	0	NA	promoter-TSS (NM_001134658)	promoter-TSS (NM_001134658)	47	NR_144336	159371		NM_153226	ENSG00000176273	SLC35G1	C10orf60|POST|TMEM20	solute carrier family 35 member G1	protein-coding
110664	chr19	2252881	2254230	+	0	NA	intron (NM_144616, intron 5 of 6)	CpG	2862	NM_144616	126306		NM_144616	ENSG00000167476	JSRP1	JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding
2298	chr1	8970811	8971850	+	0	NA	intron (NM_001270502, intron 5 of 5)	AluSx1|SINE|Alu	25462	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
107684	chr18	49415201	49415680	+	0	NA	intron (NM_001374431, intron 2 of 16)	L1ME4a|LINE|L1	45205	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
198257	chr6	99467601	99467880	+	0	NA	intron (NR_144345, intron 10 of 16)	intron (NR_144345, intron 10 of 16)	-42395	NM_001322413	25957		NM_015491	ENSG00000132424	PNISR	C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2	PNN interacting serine and arginine rich protein	protein-coding
86864	chr16	67943901	67944100	+	0	NA	exon (NM_000229, exon 1 of 6)	exon (NM_000229, exon 1 of 6)	120	NM_000229	3931		NM_000229	ENSG00000213398	LCAT	-	lecithin-cholesterol acyltransferase	protein-coding
25310	chr10	6214051	6214350	+	0	NA	intron (NR_136554, intron 2 of 11)	MER1B|DNA|hAT-Charlie	11268	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
10693	chr1	74729901	74730300	+	0	NA	intron (NM_001130043, intron 1 of 7)	intron (NM_001130043, intron 1 of 7)	2950	NM_001889	1429		NM_001889	ENSG00000116791	CRYZ	-	crystallin zeta	protein-coding
32082	chr10	101125921	101126380	+	0	NA	intron (NR_130724, intron 2 of 2)	intron (NR_130724, intron 2 of 2)	4996	NR_130723	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
5525	chr1	25801921	25802230	+	0	NA	exon (NM_020451, exon 3 of 13)	exon (NM_020451, exon 3 of 13)	1882	NM_020451	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
90470	chr17	1387301	1387880	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	12632	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
9373	chr1	47235121	47235580	+	0	NA	Intergenic	Intergenic	-3015	NM_001290403	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
27879	chr10	41865421	41866080	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	502295	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
106838	chr18	24023271	24023730	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-8040	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
81986	chr16	11893571	11894600	+	0	NA	intron (NM_001130007, intron 5 of 14)	AluJb|SINE|Alu	21871	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
186214	chr5	134376251	134376550	+	0	NA	intron (NM_003337, intron 2 of 5)	intron (NM_003337, intron 2 of 5)	4831	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
204536	chr7	4861621	4862100	+	0	NA	5' UTR (NM_020144, exon 1 of 1)	5' UTR (NM_020144, exon 1 of 1)	170	NM_020144	56903		NM_020144	ENSG00000218823	PAPOLB	PAPT|TPAP	poly(A) polymerase beta	protein-coding
69118	chr14	92524521	92525530	+	0	NA	intron (NM_024832, intron 1 of 9)	MER91A|DNA|hAT-Tip100	11244	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
190882	chr6	2542651	2543300	+	0	NA	Intergenic	MER72|LTR|ERV1	-91525	NR_149119	105374885		NR_149118		LINC02521	-	long intergenic non-protein coding RNA 2521	ncRNA
155504	chr22	38678951	38679450	+	0	NA	Intergenic	L1ME3A|LINE|L1	-2757	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
21457	chr1	205505801	205506230	+	0	NA	intron (NM_002596, intron 1 of 15)	intron (NM_002596, intron 1 of 15)	1346	NM_212502	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
204811	chr7	5673371	5673530	+	0	NA	intron (NR_046834, intron 1 of 2)	intron (NR_046834, intron 1 of 2)	7011	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
116976	chr19	18875171	18875730	+	0	NA	intron (NM_021267, intron 6 of 7)	AluSz|SINE|Alu	20708	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
6288	chr1	27608501	27610380	+	0	NA	Intergenic	Intergenic	-5296	NM_001371928	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
69811	chr14	99209351	99210230	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	62407	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
84123	chr16	29677001	29677200	+	0	NA	Intergenic	MER96|DNA|hAT-Tip100	-1908	NM_001318249	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
130311	chr2	84957051	84957430	+	0	NA	Intergenic	AluJb|SINE|Alu	-13921	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
75018	chr15	64045621	64047000	+	0	NA	non-coding (NR_169524, exon 1 of 11)	non-coding (NR_169524, exon 1 of 11)	175	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
49908	chr12	39611721	39612130	+	0	NA	intron (NM_005164, intron 2 of 9)	L1ME3A|LINE|L1	7878	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
98439	chr17	46865171	46865330	+	0	NA	intron (NM_001320458, intron 1 of 4).2	intron (NM_001320458, intron 1 of 4).2	13667	NM_003396	7484		NM_003396	ENSG00000158955	WNT9B	WNT14B|WNT15	Wnt family member 9B	protein-coding
164378	chr3	58235401	58235800	+	0	NA	Intergenic	Intergenic	-1902	NM_020676	57406		NM_020676	ENSG00000163686	ABHD6	-	abhydrolase domain containing 6, acylglycerol lipase	protein-coding
63604	chr14	20506401	20506950	+	0	NA	intron (NM_001012975, intron 1 of 1)	SVA_E|Retroposon|SVA	2442	NM_001012975	338879		NM_001012975	ENSG00000182545	RNASE10	RAH1|RNASE9	ribonuclease A family member 10 (inactive)	protein-coding
174562	chr4	40222151	40222680	+	0	NA	intron (NM_001278360, intron 2 of 3)	Tigger1|DNA|TcMar-Tigger	25384	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
183972	chr5	88688921	88689430	+	0	NA	intron (NR_146284, intron 1 of 3)	intron (NR_146284, intron 1 of 3)	1866	NR_152233	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
6459	chr1	28262051	28262350	+	0	NA	intron (NM_031459, intron 1 of 9)	intron (NM_031459, intron 1 of 9)	2682	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
4257	chr1	19643251	19645430	+	0	NA	promoter-TSS (NM_005380)	promoter-TSS (NM_005380)	29	NM_005380	4681		NM_005380	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	NBL1, DAN family BMP antagonist	protein-coding
162532	chr3	48610951	48611250	+	0	NA	Intergenic	AluSx|SINE|Alu	-1454	NM_003365	7384		NM_003365	ENSG00000010256	UQCRC1	D3S3191|PKNPY|QCR1|UQCR1	ubiquinol-cytochrome c reductase core protein 1	protein-coding
56757	chr12	120153571	120153730	+	0	NA	intron (NM_006836, intron 32 of 57)	intron (NM_006836, intron 32 of 57)	1849	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
163209	chr3	50240301	50240500	+	0	NA	intron (NM_001282618, intron 1 of 7)	intron (NM_001282618, intron 1 of 7)	4196	NM_001282618	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
194930	chr6	35139821	35140330	+	0	NA	5' UTR (NM_001366324, exon 2 of 9)	5' UTR (NM_001366324, exon 2 of 9)	1264	NM_001366324	6954		NM_018679	ENSG00000124678	TCP11	D6S230E|FPPR	t-complex 11	protein-coding
58006	chr12	124369651	124369950	+	0	NA	intron (NM_001077261, intron 21 of 47)	intron (NM_001077261, intron 21 of 47)	-32558	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
84788	chr16	31030621	31030900	+	0	NA	Intergenic	Intergenic	-2335	NM_001272096	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
55023	chr12	96381271	96381630	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	18989	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
122859	chr19	50483001	50484450	+	0	NA	3' UTR (NM_175063, exon 8 of 8)	3' UTR (NM_175063, exon 8 of 8)	-6877	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
85463	chr16	50673551	50674050	+	0	NA	exon (NM_182854, exon 4 of 4)	exon (NM_182854, exon 4 of 4)	4945	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
208065	chr7	56082101	56082300	+	0	NA	exon (NM_001258459, exon 8 of 11)	exon (NM_001258459, exon 8 of 11)	10752	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
223635	chr8	144334151	144334550	+	0	NA	intron (NM_031309, intron 1 of 1)	CpG	2132	NM_031309	83482		NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding
215480	chr7	158338471	158338630	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	194263	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
196071	chr6	42230321	42230630	+	0	NA	intron (NM_033502, intron 17 of 17)	intron (NM_033502, intron 17 of 17)	-12614	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
169558	chr3	170221901	170224230	+	0	NA	intron (NM_002740, intron 1 of 17)	intron (NM_002740, intron 1 of 17)	641	NM_002740	5584		NM_002740	ENSG00000163558	PRKCI	DXS1179E|PKCI|nPKC-iota	protein kinase C iota	protein-coding
137730	chr2	197803051	197803500	+	0	NA	Intergenic	Intergenic	-1318	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
175073	chr4	54063221	54065150	+	0	NA	exon (NM_012110, exon 1 of 6)	exon (NM_012110, exon 1 of 6)	420	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
21935	chr1	207865301	207865800	+	0	NA	Intergenic	Intergenic	-42847	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
174475	chr4	39817501	39817700	+	0	NA	Intergenic	AluSg|SINE|Alu	119464	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
30523	chr10	79351501	79351800	+	0	NA	intron (NM_005729, intron 4 of 5)	intron (NM_005729, intron 4 of 5)	4181	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
171156	chr3	195623221	195623480	+	0	NA	Intergenic	Intergenic	28809	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
125457	chr2	12177751	12178130	+	0	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	-21190	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
135293	chr2	160210621	160210900	+	0	NA	Intergenic	Intergenic	-10447	NM_001282354	3694		NM_000888	ENSG00000115221	ITGB6	AI1H	integrin subunit beta 6	protein-coding
78863	chr15	100353571	100353800	+	0	NA	Intergenic	MIR|SINE|MIR	-2967	NR_028139	388182		NM_207383	ENSG00000189419	SPATA41	HSD47	spermatogenesis associated 41	ncRNA
22903	chr1	225877551	225878230	+	0	NA	intron (NM_014698, intron 2 of 24)	intron (NM_014698, intron 2 of 24)	4490	NM_014698	9725		NM_014698	ENSG00000196187	TMEM63A	HLD19|KIAA0792	transmembrane protein 63A	protein-coding
43845	chr11	87252771	87253130	+	0	NA	intron (NM_022918, intron 6 of 14)	intron (NM_022918, intron 6 of 14)	215016	NM_001168724	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
71334	chr14	105418421	105418750	+	0	NA	intron (NR_125385, intron 1 of 1)	intron (NR_125385, intron 1 of 1)	1154	NR_125384	100507437		NR_125384	ENSG00000251602	MTA1-DT	-	MTA1 divergent transcript	ncRNA
92914	chr17	16525051	16525150	+	0	NA	Intergenic	L1MB5|LINE|L1	-32907	NM_207387	388341		NM_207387	ENSG00000181350	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
132530	chr2	106157051	106157750	+	0	NA	intron (NR_165308, intron 5 of 14)	intron (NR_165308, intron 5 of 14)	3237	NM_001377506	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
109295	chr19	558171	558330	+	0	NA	Intergenic	AluY|SINE|Alu	-13033	NM_198591	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
177980	chr4	139099371	139099730	+	0	NA	intron (NM_001371324, intron 5 of 10)	intron (NM_001371324, intron 5 of 10)	-15136	NM_001276457	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
90609	chr17	1633221	1633700	+	0	NA	TTS (NM_003693).2	TTS (NM_003693).2	-4626	NM_152346	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
40991	chr11	65396921	65397180	+	0	NA	intron (NM_001300832, intron 6 of 9)	intron (NM_001300832, intron 6 of 9)	10413	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
159803	chr3	16335621	16336580	+	0	NA	intron (NM_015150, intron 7 of 9)	intron (NM_015150, intron 7 of 9)	70888	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
123261	chr19	53393701	53393900	+	0	NA	Intergenic	MER67C|LTR|ERV1	-1333	NR_146721	91661		NM_001040185	ENSG00000196417	ZNF765	-	zinc finger protein 765	protein-coding
238352	chrX	149631071	149632060	+	0	NA	non-coding (NR_104121, exon 1 of 4)	non-coding (NR_104121, exon 1 of 4)	227	NM_001282302	84548		NM_032508	ENSG00000269556	TMEM185A	CXorf13|FAM11A|FRAXF|ee3	transmembrane protein 185A	protein-coding
195997	chr6	41998071	41998230	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSz|SINE|Alu	50744	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
223552	chr8	144218271	144218800	+	0	NA	intron (NM_032450, intron 12 of 43)	intron (NM_032450, intron 12 of 43)	44202	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
8084	chr1	39032771	39033130	+	0	NA	intron (NM_004552, intron 2 of 2)	L2a|LINE|L2	6600	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
206208	chr7	28329901	28330680	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	30969	NM_182899	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
27661	chr10	33031601	33032000	+	0	NA	Intergenic	AluJr|SINE|Alu	-73570	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
147022	chr20	53592401	53593200	+	0	NA	intron (NM_006526, intron 1 of 5)	intron (NM_006526, intron 1 of 5)	1039	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
168423	chr3	142445471	142446250	+	0	NA	intron (NM_019001, intron 1 of 41)	HAL1M8|LINE|L1	2177	NM_019001	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
16570	chr1	154998651	155000300	+	0	NA	Intergenic	CpG	-3174	NM_001377452	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
40782	chr11	64882501	64882880	+	0	NA	Intergenic	Intergenic	-2977	NM_001282445	10938		NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH domain containing 1	protein-coding
140295	chr2	232418851	232419830	+	0	NA	Intergenic	CpG	12496	NM_031313	251		NM_031313	ENSG00000163286	ALPG	ALPPL|ALPPL2|GCAP	alkaline phosphatase, germ cell	protein-coding
175346	chr4	68515151	68515250	+	0	NA	Intergenic	L1PA2|LINE|L1	61122	NM_001077	7367		NM_001077	ENSG00000197888	UGT2B17	BMND12|UDPGT2B17	UDP glucuronosyltransferase family 2 member B17	protein-coding
137366	chr2	196168151	196168480	+	0	NA	intron (NM_004226, intron 1 of 7)	intron (NM_004226, intron 1 of 7)	3263	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
181992	chr5	55225271	55225800	+	0	NA	intron (NM_001190787, intron 3 of 6)	intron (NM_001190787, intron 3 of 6)	1780	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
216924	chr8	22718701	22719900	+	0	NA	intron (NM_001363233, intron 6 of 6)	intron (NM_001363233, intron 6 of 6)	-25820	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
62071	chr13	94326471	94326630	+	0	NA	intron (NM_005708, intron 6 of 8)	L1MC1|LINE|L1	-138559	NR_046535	100873972		NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
44091	chr11	95711251	95711750	+	0	NA	Intergenic	Intergenic	78282	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
26638	chr10	22501301	22501700	+	0	NA	Intergenic	Intergenic	-63571	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
162905	chr3	49403251	49403550	+	0	NA	intron (NM_001313943, intron 1 of 5)	intron (NM_001313943, intron 1 of 5)	8576	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
134319	chr2	136054201	136054400	+	0	NA	Intergenic	MIRb|SINE|MIR	61935	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
204317	chr7	2702471	2702630	+	0	NA	intron (NM_001321766, intron 2 of 6)	intron (NM_001321766, intron 2 of 6)	14348	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
117131	chr19	19272501	19272700	+	0	NA	intron (NM_001001524, intron 1 of 9)	intron (NM_001001524, intron 1 of 9)	701	NM_001001524	53345		NM_203510	ENSG00000213996	TM6SF2	-	transmembrane 6 superfamily member 2	protein-coding
88050	chr16	81451171	81451530	+	0	NA	intron (NM_198390, intron 1 of 20)	THE1B|LTR|ERVL-MaLR	6180	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
5577	chr1	25989101	25989500	+	0	NA	intron (NM_000437, intron 3 of 10)	intron (NM_000437, intron 3 of 10)	8763	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
189101	chr5	170312571	170313050	+	0	NA	promoter-TSS (NR_147701)	promoter-TSS (NR_147701)	-94	NR_147701	100128059		NR_147701	ENSG00000250274	LOC100128059	-	uncharacterized LOC100128059	ncRNA
56277	chr12	112116421	112117050	+	0	NA	Intergenic	Intergenic	-7952	NM_024953	80018		NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N-alpha-acetyltransferase 25, NatB auxiliary subunit	protein-coding
167732	chr3	131331721	131332050	+	0	NA	intron (NR_038976, intron 2 of 3)	L1PA3|LINE|L1	-29960	NR_002949	152195		NM_194289	ENSG00000293492	NUDT16L2P	NUDT16P|NUDT16P1	nudix hydrolase 16 like 2, pseudogene	pseudo
226621	chr9	73175451	73175750	+	0	NA	Intergenic	MER41-int|LTR|ERV1	23735	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
225240	chr9	34219471	34220350	+	0	NA	intron (NR_033243, intron 2 of 7)	(CCCTC)n|Simple_repeat|Simple_repeat	40867	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
162655	chr3	48900951	48901250	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2218	NM_000387	788		NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	solute carrier family 25 member 20	protein-coding
33240	chr10	114252601	114253430	+	0	NA	intron (NM_001272046, intron 2 of 13)	intron (NM_001272046, intron 2 of 13)	13401	NM_001320804	340706		NM_198496	ENSG00000165816	VWA2	AMACO|CCSP-2|CCSP2|NET42	von Willebrand factor A domain containing 2	protein-coding
89002	chr16	87963321	87964180	+	0	NA	intron (NM_001173542, intron 1 of 12)	intron (NM_001173542, intron 1 of 12)	3879	NM_001173542	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
64154	chr14	22901851	22902150	+	0	NA	exon (NM_001077352, exon 10 of 12)	exon (NM_001077352, exon 10 of 12)	17149	NM_001352765	55147		NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding
130817	chr2	87058721	87058980	+	0	NA	intron (NR_026846, intron 1 of 10)	AluJb|SINE|Alu	17563	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
48545	chr12	10221651	10221950	+	0	NA	TTS (NM_001363598)	TTS (NM_001363598)	8923	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
200819	chr6	137944701	137945350	+	0	NA	intron (NR_149097, intron 1 of 1)	(TTGTT)n|Simple_repeat|Simple_repeat	775	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
233981	chrX	2708221	2709280	+	0	NA	intron (NR_135623, intron 1 of 10)	intron (NR_135623, intron 1 of 10)	17455	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
116588	chr19	18254901	18255930	+	0	NA	promoter-TSS (NR_036575)	promoter-TSS (NR_036575)	4	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
188293	chr5	151147401	151147800	+	0	NA	intron (NM_001363114, intron 2 of 24)	MLT1K|LTR|ERVL-MaLR	-5916	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
214886	chr7	151409801	151410930	+	0	NA	promoter-TSS (NM_198285)	promoter-TSS (NM_198285)	-327	NM_198285	349136		NM_198285	ENSG00000187260	WDR86	-	WD repeat domain 86	protein-coding
73563	chr15	44394721	44395730	+	0	NA	intron (NM_177974, intron 8 of 8)	AluYc3|SINE|Alu	-32404	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
143482	chr20	31064821	31065400	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-192554	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
83676	chr16	28374201	28374580	+	0	NA	Intergenic	Intergenic	-11530	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
142299	chr20	3250171	3250330	+	0	NA	3' UTR (NM_001009984, exon 37 of 37)	3' UTR (NM_001009984, exon 37 of 37)	-11060	NR_135000	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
55393	chr12	104458301	104459880	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	2142	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
214507	chr7	150467951	150468450	+	0	NA	intron (NM_175571, intron 2 of 4)	L2b|LINE|L2	17570	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
97338	chr17	43276301	43276900	+	0	NA	Intergenic	AluSp|SINE|Alu	1568	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
160909	chr3	34016821	34017680	+	0	NA	Intergenic	Intergenic	218620	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
137398	chr2	196238571	196239050	+	0	NA	intron (NM_001348768, intron 21 of 28)	intron (NM_001348768, intron 21 of 28)	-21214	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
190750	chr6	429671	430030	+	0	NA	Intergenic	Intergenic	38098	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
12618	chr1	109099921	109101680	+	0	NA	TTS (NR_003023)	TTS (NR_003023)	607	NR_003023	677766		NR_003023	ENSG00000278249	SCARNA2	HBII-382|mgU2-25/61	small Cajal body-specific RNA 2	ncRNA
135415	chr2	161134671	161134830	+	0	NA	Intergenic	Intergenic	-2205	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
87515	chr16	71865151	71865980	+	0	NA	intron (NM_001376300, intron 3 of 6)	intron (NM_001376300, intron 3 of 6)	14911	NM_001318239	55565		NM_017530	ENSG00000102984	ZNF821	-	zinc finger protein 821	protein-coding
216199	chr8	11860601	11860800	+	0	NA	intron (NM_001384728, intron 1 of 10)	intron (NM_001384728, intron 1 of 10)	7387	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
134013	chr2	131034471	131035730	+	0	NA	intron (NM_001375904, intron 2 of 10)	CpG	58062	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
138953	chr2	218256101	218256480	+	0	NA	Intergenic	AluJo|SINE|Alu	-3206	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
53459	chr12	65823901	65824450	+	0	NA	promoter-TSS (NM_001300919)	promoter-TSS (NM_001300919)	-285	NM_001300918	8091		NM_003483	ENSG00000149948	HMGA2	BABL|HMGI-C|HMGIC|LIPO|SRS5|STQTL9	high mobility group AT-hook 2	protein-coding
201954	chr6	151899201	151899430	+	0	NA	intron (NM_001385572, intron 3 of 6)	SVA_D|Retroposon|SVA	90208	NM_001328100	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
41467	chr11	66130551	66131530	+	0	NA	intron (NM_018026, intron 1 of 23)	AluJr|SINE|Alu	60768	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
231561	chr9	131489551	131491130	+	0	NA	promoter-TSS (NR_002914).2	promoter-TSS (NR_002914).2	-146	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
212203	chr7	118183221	118184800	+	0	NA	promoter-TSS (NM_016200)	promoter-TSS (NM_016200)	-154	NM_016200	51691		NM_016200	ENSG00000128534	LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding
131252	chr2	96022451	96023680	+	0	NA	TTS (NR_003698)	TTS (NR_003698)	12180	NM_001321530	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
160659	chr3	31762171	31762530	+	0	NA	intron (NM_001174060, intron 3 of 10)	intron (NM_001174060, intron 3 of 10)	58137	NR_049771	100874206		NR_049771	ENSG00000232490	OSBPL10-AS1	-	OSBPL10 antisense RNA 1	ncRNA
17953	chr1	160402471	160402630	+	0	NA	intron (NM_020335, intron 1 of 7)	intron (NM_020335, intron 1 of 7)	1986	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
52245	chr12	54410121	54410380	+	0	NA	intron (NR_120486, intron 3 of 3)	intron (NR_120486, intron 3 of 3)	9016	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
202815	chr6	159684001	159684200	+	0	NA	intron (NM_001322815, intron 3 of 3)	intron (NM_001322815, intron 3 of 3)	9141	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
94963	chr17	32141021	32141380	+	0	NA	TTS (NR_136413)	TTS (NR_136413)	-1254	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
216042	chr8	9657151	9657850	+	0	NA	intron (NM_003747, intron 3 of 26)	SVA_F|Retroposon|SVA	-84172	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
36591	chr11	6713001	6713600	+	0	NA	non-coding (NR_003945, exon 1 of 1)	non-coding (NR_003945, exon 1 of 1)	8579	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
204084	chr7	2101901	2103100	+	0	NA	intron (NM_001304524, intron 9 of 16)	(CCACCA)n|Simple_repeat|Simple_repeat	-13448	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
5875	chr1	26776201	26776600	+	0	NA	intron (NM_139135, intron 19 of 19)	AluY|SINE|Alu	-10654	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
138603	chr2	208257051	208257350	+	0	NA	Intergenic	LTR5B|LTR|ERVK	1967	NR_046452	100507475		NR_046452	ENSG00000231908	IDH1-AS1	-	IDH1 antisense RNA 1	ncRNA
71653	chr14	106840271	106840680	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	10524	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
225573	chr9	36008401	36009180	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-28123	NM_001316345	8434		NM_021111	ENSG00000122707	RECK	ST15	reversion inducing cysteine rich protein with kazal motifs	protein-coding
124969	chr2	8827951	8828250	+	0	NA	intron (NR_145965, intron 1 of 29)	L2a|LINE|L2	9513	NM_001348740	57498		NM_020738	ENSG00000134313	KIDINS220	ARMS|SINO|VENARG	kinase D interacting substrate 220	protein-coding
146103	chr20	47725301	47726000	+	0	NA	intron (NM_198596, intron 3 of 20)	intron (NM_198596, intron 3 of 20)	60414	NM_018837	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
201604	chr6	149361001	149361450	+	0	NA	intron (NM_001369506, intron 2 of 7)	MSTA-int|LTR|ERVL-MaLR	-39037	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
127916	chr2	46337701	46337900	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	40393	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
85070	chr16	32188001	32188450	+	0	NA	promoter-TSS (NR_109773)	promoter-TSS (NR_109773)	-112	NR_135178	102723753		NR_135178		LOC102723753	-	HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene	pseudo
135688	chr2	168758151	168758450	+	0	NA	intron (NM_203463, intron 8 of 9)	intron (NM_203463, intron 8 of 9)	28129	NR_045786	100861402		NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
205718	chr7	23468981	23470000	+	0	NA	intron (NM_006547, intron 1 of 14)	CpG	1001	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
172471	chr4	2047821	2048080	+	0	NA	Intergenic	Intergenic	5955	NM_001141936	401115		NM_001141936	ENSG00000243449	NICOL1	C4orf48|CHR4_55|NICOL	NELL2 interacting cell ontogeny regulator 1	protein-coding
4533	chr1	21933571	21934330	+	0	NA	intron (NM_001291860, intron 1 of 96)	intron (NM_001291860, intron 1 of 96)	3360	NM_005529	3339		NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
193813	chr6	31466901	31467680	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-3939	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
145236	chr20	38927871	38928250	+	0	NA	intron (NM_030919, intron 1 of 3)	intron (NM_030919, intron 1 of 3)	1643	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
234289	chrX	13669201	13669780	+	0	NA	Intergenic	Intergenic	16349	NM_001297563	170082		NM_152634	ENSG00000176896	TCEANC	TCEANC1	transcription elongation factor A N-terminal and central domain containing	protein-coding
16621	chr1	155082541	155083350	+	0	NA	intron (NM_004952, intron 1 of 4)	intron (NM_004952, intron 1 of 4)	4108	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
54170	chr12	76790771	76791180	+	0	NA	intron (NM_015336, intron 1 of 16)	L1MA5|LINE|L1	26717	NM_001359626	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
104287	chr17	80847201	80848100	+	0	NA	intron (NM_020761, intron 11 of 33)	intron (NM_020761, intron 11 of 33)	-42018	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
232514	chr9	136308871	136309680	+	0	NA	Intergenic	Intergenic	-2374	NM_001291516	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
147944	chr20	62952101	62953300	+	0	NA	promoter-TSS (NM_001302643)	promoter-TSS (NM_001302643)	-9	NM_001302643	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
219435	chr8	72000121	72000980	+	0	NA	intron (NR_033652, intron 4 of 4)	intron (NR_033652, intron 4 of 4)	75034	NM_007332	8989		NM_007332	ENSG00000104321	TRPA1	ANKTM1|FEPS|FEPS1|p120	transient receptor potential cation channel subfamily A member 1	protein-coding
37799	chr11	32606621	32606900	+	0	NA	TTS (NM_006360)	TTS (NM_006360)	22929	NM_006360	10480		NM_006360	ENSG00000149100	EIF3M	B5|GA17|PCID1|TANGO7|hfl-B5	eukaryotic translation initiation factor 3 subunit M	protein-coding
116949	chr19	18853951	18854480	+	0	NA	intron (NM_001297549, intron 8 of 23)	intron (NM_001297549, intron 8 of 23)	22256	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
36262	chr11	3786701	3787300	+	0	NA	intron (NR_157590, intron 1 of 31)	MIRc|SINE|MIR	10546	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
224062	chr9	3530801	3531000	+	0	NA	Intergenic	L1ME2|LINE|L1	-4899	NM_134428	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
201703	chr6	149704401	149705130	+	0	NA	intron (NM_001350339, intron 1 of 9)	AluJo|SINE|Alu	11660	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
138704	chr2	213117371	213117730	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	32887	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
96361	chr17	40090221	40090700	+	0	NA	3' UTR (NM_199334, exon 9 of 9)	3' UTR (NM_199334, exon 9 of 9)	10129	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
90063	chr16	89958021	89958330	+	0	NA	intron (NM_001242822, intron 5 of 5)	MLT1K|LTR|ERVL-MaLR	4798	NR_145807	109623464		NR_145807		SNORA119	-	small nucleolar RNA, H/ACA box 119	snoRNA
129826	chr2	72149801	72150950	+	0	NA	Intergenic	Intergenic	-2513	NM_019885	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
102583	chr17	75880451	75880750	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2019	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
186800	chr5	139376021	139376480	+	0	NA	intron (NM_152685, intron 13 of 14)	AluSg|SINE|Alu	7047	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
141975	chr20	1341671	1341850	+	0	NA	intron (NR_040047, intron 1 of 2)	intron (NR_040047, intron 1 of 2)	-12621	NM_080489	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
180272	chr5	1792451	1794650	+	0	NA	Intergenic	Intergenic	6287	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
78425	chr15	92655271	92655830	+	0	NA	exon (NM_207446, exon 1 of 3)	exon (NM_207446, exon 1 of 3)	225	NM_207446	400451		NM_207446	ENSG00000185442	FAM174B	-	family with sequence similarity 174 member B	protein-coding
154241	chr22	31594571	31595030	+	0	NA	intron (NM_001007467, intron 15 of 32)	AluY|SINE|Alu	26731	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
43510	chr11	78962101	78962300	+	0	NA	intron (NM_001098816, intron 6 of 33)	intron (NM_001098816, intron 6 of 33)	-387336	NM_001243251	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
118986	chr19	38881151	38881450	+	0	NA	intron (NR_034146, intron 8 of 13)	intron (NR_034146, intron 8 of 13)	-3025	NM_001195833	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
207901	chr7	50448871	50449030	+	0	NA	intron (NM_001287493, intron 1 of 2)	intron (NM_001287493, intron 1 of 2)	1400	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
42685	chr11	72612501	72613100	+	0	NA	intron (NM_001146209, intron 3 of 31)	intron (NM_001146209, intron 3 of 31)	2330	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
230057	chr9	127417951	127418650	+	0	NA	Intergenic	Intergenic	-6074	NM_001286696	7633		NM_007135	ENSG00000196152	ZNF79	pT7	zinc finger protein 79	protein-coding
100059	chr17	58121851	58122180	+	0	NA	Intergenic	AluSq|SINE|Alu	-33139	NM_012374	26689		NM_012374	ENSG00000141194	OR4D1	OR17-23|OR4D3|OR4D4P|TPCR16	olfactory receptor family 4 subfamily D member 1	protein-coding
128107	chr2	48113101	48113700	+	0	NA	Intergenic	Intergenic	-200899	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
20976	chr1	202623601	202623800	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	19753	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
139451	chr2	223854751	223855100	+	0	NA	Intergenic	MER41B|LTR|ERV1	-17343	NR_110905	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
198200	chr6	96926471	96926630	+	0	NA	intron (NM_001323252, intron 2 of 11)	MIRc|SINE|MIR	1822	NM_001323259	114792		NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
187245	chr5	141392551	141392650	+	0	NA	5' UTR (NM_014004, exon 1 of 1)	5' UTR (NM_014004, exon 1 of 1)	684	NM_032088	9708		NM_014004	ENSG00000253767	PCDHGA8	PCDH-GAMMA-A8	protocadherin gamma subfamily A, 8	protein-coding
38215	chr11	36407151	36407450	+	0	NA	intron (NM_001160167, intron 3 of 8)	FRAM|SINE|Alu	6303	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
192064	chr6	16619501	16620800	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	140034	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
57988	chr12	124295121	124295650	+	0	NA	5' UTR (NM_001365156, exon 1 of 3)	5' UTR (NM_001365156, exon 1 of 3)	292	NM_001365156	144347		NM_181709	ENSG00000178882	RFLNA	CFM2|FAM101A	refilin A	protein-coding
94072	chr17	27473451	27474350	+	0	NA	intron (NM_014238, intron 1 of 20)	intron (NM_014238, intron 1 of 20)	1936	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
78373	chr15	91482601	91483080	+	0	NA	intron (NR_110106, intron 2 of 3)	MER92A|LTR|ERV1	19501	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
170515	chr3	186518801	186519750	+	0	NA	Intergenic	Intergenic	25105	NM_017541	1427		NM_017541	ENSG00000213139	CRYGS	CRYG8|CTRCT20	crystallin gamma S	protein-coding
228735	chr9	109440501	109441150	+	0	NA	intron (NM_001145369, intron 2 of 20)	L3|LINE|CR1	10559	NM_001145369	5774		NM_002829	ENSG00000070159	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase non-receptor type 3	protein-coding
111916	chr19	4708271	4708430	+	0	NA	intron (NR_158699, intron 4 of 22)	LTR42|LTR|ERVL	12002	NM_001384611	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
207651	chr7	45077501	45077700	+	0	NA	Intergenic	AluSx4|SINE|Alu	11369	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
151996	chr22	19178001	19180250	+	0	NA	promoter-TSS (NM_001287387)	promoter-TSS (NM_001287387)	-262	NR_046298	6576		NM_005984	ENSG00000100075	SLC25A1	CIC|CMS23|CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
69242	chr14	92853051	92853490	+	0	NA	Intergenic	L1PA4|LINE|L1	54212	NR_135253	101929002		NR_135253	ENSG00000258499	LINC02287	-	long intergenic non-protein coding RNA 2287	ncRNA
153588	chr22	26772351	26772530	+	0	NA	intron (NR_110543, intron 2 of 5)	SVA_F|Retroposon|SVA	-87771	NR_146604	110091768		NR_146604		LOC110091768	-	uncharacterized LOC110091768	ncRNA
57239	chr12	121554771	121554930	+	0	NA	intron (NM_001005366, intron 4 of 22)	intron (NM_001005366, intron 4 of 22)	25396	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
85825	chr16	56995471	56996300	+	0	NA	intron (NR_169520, intron 1 of 47)	MER113|DNA|hAT-Charlie	6328	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
181274	chr5	39270351	39271180	+	0	NA	promoter-TSS (NM_001243093)	promoter-TSS (NM_001243093)	-116	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
144240	chr20	34476121	34476930	+	0	NA	intron (NM_031483, intron 16 of 24)	intron (NM_031483, intron 16 of 24)	10200	NR_030374	693229		NR_030374	ENSG00000207997	MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	ncRNA
6893	chr1	31505901	31506250	+	0	NA	intron (NR_034112, intron 5 of 7)	intron (NR_034112, intron 5 of 7)	5990	NR_034112	149086		NR_034112	ENSG00000293391	LDC1P	LINC01225	leucine decarboxylase 1, pseudogene	pseudo
48458	chr12	9749621	9749880	+	0	NA	Intergenic	L1ME4a|LINE|L1	11151	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
186351	chr5	134844871	134845030	+	0	NA	promoter-TSS (NM_152409)	promoter-TSS (NM_152409)	-730	NM_152409	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
30202	chr10	74822051	74823300	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-2580	NM_001370139	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
75634	chr15	67185621	67186080	+	0	NA	intron (NM_001145104, intron 5 of 6)	intron (NM_001145104, intron 5 of 6)	19695	NM_001145104	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
239275	chrY	13703271	13704750	+	0	NA	5' UTR (NM_004202, exon 1 of 2)	5' UTR (NM_004202, exon 1 of 2)	111	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
149059	chr21	15507771	15507930	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-222084	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
198081	chr6	90264701	90265100	+	0	NA	intron (NM_021813, intron 2 of 8)	intron (NM_021813, intron 2 of 8)	31943	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
90301	chr17	1061221	1061480	+	0	NA	intron (NM_001282149, intron 5 of 17).3	intron (NM_001282149, intron 5 of 17).3	17643	NM_001282149	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
112443	chr19	6371471	6371630	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1244	NM_032306	84266		NM_032306	ENSG00000125652	ALKBH7	ABH7|SPATA11|UNQ6002	alkB homolog 7	protein-coding
25049	chr10	3773401	3774500	+	0	NA	Intergenic	Intergenic	11259	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
21041	chr1	203039171	203039850	+	0	NA	intron (NM_001304332, intron 2 of 28)	intron (NM_001304332, intron 2 of 28)	13019	NM_001304332	8497		NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding
180129	chr5	1319921	1320380	+	0	NA	intron (NM_030782, intron 16 of 16)	intron (NM_030782, intron 16 of 16)	-10773	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
24076	chr1	235320071	235320830	+	0	NA	intron (NM_016374, intron 2 of 23)	L2a|LINE|L2	-6766	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
195979	chr6	41970121	41971530	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-28977	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
151640	chr22	16600851	16601680	+	0	NA	promoter-TSS (NR_001591)	promoter-TSS (NR_001591)	-646	NR_001591	387590		NR_001591	ENSG00000290418	TPTEP1	psiTPTE22	TPTE pseudogene 1	pseudo
96003	chr17	39212071	39213350	+	0	NA	intron (NM_001351360, intron 10 of 10)	MIRc|SINE|MIR	12387	NM_001330200	6143		NM_000981	ENSG00000108298	RPL19	L19|eL19	ribosomal protein L19	protein-coding
89194	chr16	88579901	88580100	+	0	NA	intron (NM_144604, intron 2 of 17)	intron (NM_144604, intron 2 of 17)	9597	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
90972	chr17	2697371	2697700	+	0	NA	intron (NM_015229, intron 10 of 25)	LFSINE_Vert|SINE|tRNA	-4616	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
200952	chr6	139178171	139179130	+	0	NA	3' UTR (NM_016217, exon 4 of 4)	3' UTR (NM_016217, exon 4 of 4)	43570	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
36986	chr11	11864271	11865450	+	0	NA	intron (NM_001372101, intron 1 of 26)	L1MDa|LINE|L1	22888	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
191011	chr6	3076971	3077130	+	0	NA	intron (NM_001354931, intron 2 of 9)	intron (NM_001354931, intron 2 of 9)	8556	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
141641	chr2	241724321	241725750	+	0	NA	TTS (NM_001330162)	TTS (NM_001330162)	-9595	NM_001287249	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
27369	chr10	30783621	30784590	+	0	NA	Intergenic	Intergenic	60886	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
1812	chr1	6212051	6212730	+	0	NA	exon (NM_207396, exon 14 of 18)	exon (NM_207396, exon 14 of 18)	6271	NM_207396	388591		NM_173795	ENSG00000158286	RNF207	C1orf188	ring finger protein 207	protein-coding
130254	chr2	84853271	84853830	+	0	NA	intron (NM_001307978, intron 2 of 4)	THE1C|LTR|ERVL-MaLR	27534	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
6364	chr1	27852121	27852980	+	0	NA	TTS (NM_014110)	TTS (NM_014110)	18149	NR_002997	677774		NR_002997	ENSG00000252947	SCARNA1	ACA35	small Cajal body-specific RNA 1	ncRNA
49162	chr12	14960651	14963500	+	0	NA	promoter-TSS (NM_001321420)	promoter-TSS (NM_001321420)	-474	NM_001321420	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
122666	chr19	49872651	49873130	+	0	NA	intron (NM_001278160, intron 2 of 4)	intron (NM_001278160, intron 2 of 4)	3359	NM_001278159	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
176008	chr4	82268171	82268800	+	0	NA	Intergenic	Intergenic	105506	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
161207	chr3	39165801	39166600	+	0	NA	Intergenic	LTR33|LTR|ERVL	-11559	NM_001320560	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
24283	chr1	236516521	236517780	+	0	NA	Intergenic	Intergenic	-1064	NM_201545	3964		NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
222160	chr8	132768651	132768750	+	0	NA	intron (NM_001382397, intron 1 of 10)	intron (NM_001382397, intron 1 of 10)	-6658	NM_001362971	51105		NM_016018	ENSG00000129292	PHF20L1	CGI-72|TDRD20B|URLC1	PHD finger protein 20 like 1	protein-coding
200602	chr6	136723851	136724230	+	0	NA	intron (NM_005923, intron 1 of 29)	intron (NM_005923, intron 1 of 29)	-60007	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
180994	chr5	35816851	35817580	+	0	NA	Intergenic	Intergenic	-39676	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
18708	chr1	167444101	167444950	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	74004	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
237155	chrX	107451711	107452830	+	0	NA	Intergenic	Intergenic	-70180	NM_032428	84443		NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
125400	chr2	11584121	11584650	+	0	NA	intron (NM_148903, intron 7 of 9)	intron (NM_148903, intron 7 of 9)	41699	NM_033090	9687		NM_014668	ENSG00000196208	GREB1	-	growth regulating estrogen receptor binding 1	protein-coding
224236	chr9	5835551	5835850	+	0	NA	Intergenic	L2a|LINE|L2	-2583	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
194637	chr6	33582771	33583100	+	0	NA	promoter-TSS (NR_028361)	promoter-TSS (NR_028361)	-764	NR_028361	449520		NM_001005478	ENSG00000293518	GGNBP1	-	gametogenetin binding protein 1 (pseudogene)	pseudo
16329	chr1	154241021	154241280	+	0	NA	intron (NM_001375623, intron 8 of 27)	AluSp|SINE|Alu	-18577	NR_145714	109617023		NR_145714	ENSG00000201129	SNORA58B	-	small nucleolar RNA, H/ACA box 58B	snoRNA
31864	chr10	100166301	100166530	+	0	NA	intron (NR_144756, intron 7 of 10)	AluJb|SINE|Alu	19614	NM_001100626	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
150276	chr21	41817351	41817450	+	0	NA	intron (NR_104258, intron 18 of 23)	intron (NR_104258, intron 18 of 23)	45902	NR_104260	63977		NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
47157	chr12	768571	768730	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	15727	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
236745	chrX	78321671	78322230	+	0	NA	intron (NM_001282188, intron 1 of 3)	intron (NM_001282188, intron 1 of 3)	5661	NM_001282188	10800		NM_006639	ENSG00000173198	CYSLTR1	CYSLT1|CYSLT1R|CYSLTR|HMTMF81	cysteinyl leukotriene receptor 1	protein-coding
4163	chr1	19388171	19388730	+	0	NA	intron (NM_001313932, intron 2 of 4)	intron (NM_001313932, intron 2 of 4)	76124	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
86374	chr16	66563551	66563650	+	0	NA	intron (NM_001204098, intron 2 of 3)	L4_C_Mam|LINE|RTE-X	-2839	NM_181268	113540		NM_052999	ENSG00000089505	CMTM1	CKLFH|CKLFH1|CKLFSF1	CKLF like MARVEL transmembrane domain containing 1	protein-coding
182125	chr5	56105821	56106280	+	0	NA	intron (NM_024669, intron 10 of 11)	intron (NM_024669, intron 10 of 11)	110883	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
196893	chr6	52296501	52297880	+	0	NA	Intergenic	AluSc|SINE|Alu	-12448	NM_001270472	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
149353	chr21	29196201	29196800	+	0	NA	intron (NR_027072, intron 1 of 1)	intron (NR_027072, intron 1 of 1)	3006	NR_027072	193629		NM_138968	ENSG00000215533	LINC00189	C21orf109|NCRNA00189	long intergenic non-protein coding RNA 189	ncRNA
223756	chr8	144516171	144516330	+	0	NA	exon (NM_004260, exon 5 of 21)	exon (NM_004260, exon 5 of 21)	1583	NM_004260	9401		NM_004260	ENSG00000160957	RECQL4	RECQ4	RecQ like helicase 4	protein-coding
175891	chr4	80072901	80074400	+	0	NA	promoter-TSS (NM_058172)	promoter-TSS (NM_058172)	-178	NM_001286780	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
162360	chr3	47846401	47846600	+	0	NA	exon (NM_138615, exon 11 of 22)	exon (NM_138615, exon 11 of 22)	-3055	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
153949	chr22	30346251	30346550	+	0	NA	exon (NM_005877, exon 3 of 16)	exon (NM_005877, exon 3 of 16)	-10224	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
96669	chr17	40817301	40817500	+	0	NA	TTS (NM_000421)	TTS (NM_000421)	-1745	NR_160887	147184		NM_145274	ENSG00000167920	KRT10-AS1	TMEM99	KRT10 antisense RNA 1	ncRNA
186678	chr5	138653421	138653680	+	0	NA	Intergenic	Arthur1A|DNA|hAT-Tip100	-78149	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
174330	chr4	38673351	38673900	+	0	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-8997	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
99028	chr17	48856071	48856630	+	0	NA	intron (NM_001261391, intron 11 of 13)	intron (NM_001261391, intron 11 of 13)	25315	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
45478	chr11	118596301	118596500	+	0	NA	intron (NM_001142281, intron 7 of 8)	intron (NM_001142281, intron 7 of 8)	-10036	NM_015157	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
168231	chr3	141312871	141313030	+	0	NA	Intergenic	Intergenic	-11236	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
145062	chr20	38462271	38462700	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-10358	NM_020336	57148		NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta	Ral GTPase activating protein non-catalytic subunit beta	protein-coding
169921	chr3	177966551	177966650	+	0	NA	Intergenic	L1MEc|LINE|L1	149735	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
122698	chr19	49910201	49910600	+	0	NA	intron (NM_001193357, intron 1 of 1)	intron (NM_001193357, intron 1 of 1)	-13513	NM_152899	259307		NM_152899	ENSG00000104951	IL4I1	FIG1|LAAO|LAO|hIL4I1	interleukin 4 induced 1	protein-coding
51693	chr12	53159321	53160330	+	0	NA	intron (NM_001244705, intron 15 of 16)	intron (NM_001244705, intron 15 of 16)	4668	NM_001244706	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
207378	chr7	44115101	44115300	+	0	NA	TTS (NM_001129)	TTS (NM_001129)	4351	NR_039792	100616346		NR_039792	ENSG00000284412	MIR4649	mir-4649	microRNA 4649	ncRNA
7879	chr1	36446321	36446580	+	0	NA	intron (NM_001330493, intron 1 of 10)	intron (NM_001330493, intron 1 of 10)	4001	NM_145047	127700		NM_145047	ENSG00000116885	OSCP1	C1orf102|NOR1	organic solute carrier partner 1	protein-coding
106448	chr18	13674721	13674980	+	0	NA	intron (NM_001098801, intron 3 of 4)	intron (NM_001098801, intron 3 of 4)	33092	NM_001276251	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
142277	chr20	3206151	3206250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1518	NM_023935	65992		NM_023935	ENSG00000198171	DDRGK1	C20orf116|SEMDSH|UFBP1|dJ1187M17.3	DDRGK domain containing 1	protein-coding
102055	chr17	74877221	74877480	+	0	NA	TTS (NM_178128)	TTS (NM_178128)	-4356	NM_001258013	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
228869	chr9	112366601	112366800	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-13209	NR_036651	84263		NM_032303	ENSG00000119471	HSDL2	C9orf99|SDR13C1	hydroxysteroid dehydrogenase like 2	protein-coding
213119	chr7	131327021	131328530	+	0	NA	promoter-TSS (NM_013255)	promoter-TSS (NM_013255)	4	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
9608	chr1	52361521	52361780	+	0	NA	intron (NM_032449, intron 3 of 23)	intron (NM_032449, intron 3 of 23)	4555	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
100353	chr17	59915621	59915880	+	0	NA	intron (NR_161455, intron 4 of 13)	AluSx1|SINE|Alu	22629	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
18342	chr1	161203421	161203900	+	0	NA	intron (NR_165188, intron 2 of 11)	AluJr4|SINE|Alu	1293	NM_001377299	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
216177	chr8	11795321	11795580	+	0	NA	promoter-TSS (NM_001287742)	promoter-TSS (NM_001287742)	-123	NM_001287742	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
70887	chr14	103871621	103873050	+	0	NA	Intergenic	Intergenic	24614	NR_038436	145216		NR_038436	ENSG00000258735	PPP1R13B-DT	HITT|LINC00637	PPP1R13B divergent transcript	ncRNA
40586	chr11	64386271	64386830	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	17948	NR_031602	100302280		NR_031602	ENSG00000221273	MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	ncRNA
2883	chr1	11643801	11644000	+	0	NA	Intergenic	Intergenic	-10507	NM_183412	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
183788	chr5	82100771	82100930	+	0	NA	intron (NM_031482, intron 3 of 7)	L3b|LINE|CR1	128827	NM_031482	83734		NM_031482	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
121131	chr19	46028851	46029230	+	0	NA	Intergenic	Intergenic	-5987	NM_005091	8993		NM_005091	ENSG00000008438	PGLYRP1	PGLYRP|PGRP|PGRP-S|PGRPS|TAG7|TNFSF3L	peptidoglycan recognition protein 1	protein-coding
135326	chr2	160367301	160367500	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	40482	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
151968	chr22	19137271	19137430	+	0	NA	exon (NM_022719, exon 8 of 10)	exon (NM_022719, exon 8 of 10)	6042	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
19077	chr1	170146921	170147180	+	0	NA	intron (NM_001136107, intron 1 of 3)	intron (NM_001136107, intron 1 of 3)	1091	NM_001136107	149281		NM_001136107	ENSG00000203740	NTMT2	C1orf184|HOMT1B|METTL11B|NTM1B	N-terminal Xaa-Pro-Lys N-methyltransferase 2	protein-coding
15186	chr1	149162071	149162230	+	0	NA	Intergenic	Intergenic	38996	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
172519	chr4	2283471	2284130	+	0	NA	intron (NM_020972, intron 8 of 12)	L2c|LINE|L2	-21691	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
144573	chr20	35771151	35772610	+	0	NA	promoter-TSS (NM_016436)	promoter-TSS (NM_016436)	-135	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
167536	chr3	129312851	129313100	+	0	NA	Intergenic	Intergenic	-3296	NR_026991	339942		NM_001025468		H1-10-AS1	C3orf47|H1FX-AS1	H1-10 antisense RNA 1	ncRNA
174284	chr4	38320951	38321050	+	0	NA	Intergenic	Intergenic	-45914	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
234853	chrX	24694801	24695000	+	0	NA	intron (NR_165483, intron 1 of 35)	intron (NR_165483, intron 1 of 35)	982	NM_001330360	5422		NM_016937	ENSG00000101868	POLA1	NSX|PDR|POLA|VEODS|p180	DNA polymerase alpha 1, catalytic subunit	protein-coding
73499	chr15	43758151	43759000	+	0	NA	intron (NM_005313, intron 3 of 12)	AluSz|SINE|Alu	12137	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
32553	chr10	103350121	103351600	+	0	NA	exon (NM_032154, exon 1 of 7)	exon (NM_032154, exon 1 of 7)	280	NM_032154	84108		NM_032154	ENSG00000156374	PCGF6	MBLR|RNF134	polycomb group ring finger 6	protein-coding
75353	chr15	65516771	65518300	+	0	NA	promoter-TSS (NR_135486)	promoter-TSS (NR_135486)	154	NM_001320875	54878		NM_017743	ENSG00000074603	DPP8	DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141	dipeptidyl peptidase 8	protein-coding
167811	chr3	133580951	133581050	+	0	NA	intron (NM_001282764, intron 2 of 4)	intron (NM_001282764, intron 2 of 4)	6566	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
9747	chr1	53292901	53293730	+	0	NA	intron (NM_017522, intron 2 of 15)	intron (NM_017522, intron 2 of 15)	34755	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
79779	chr16	1376001	1376900	+	0	NA	intron (NM_001372107, intron 10 of 14)	intron (NM_001372107, intron 10 of 14)	3202	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
60876	chr13	46109501	46109700	+	0	NA	Intergenic	L1MCc|LINE|L1	-4524	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
86	chr1	350751	351180	+	0	NA	Intergenic	L1MC3|LINE|L1	100713	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
2420	chr1	9592301	9592830	+	0	NA	intron (NM_001130924, intron 1 of 10)	intron (NM_001130924, intron 1 of 10)	3654	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
235374	chrX	44921851	44922350	+	0	NA	intron (NM_001291416, intron 2 of 28)	AluSx|SINE|Alu	48912	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
176464	chr4	89309471	89309630	+	0	NA	Intergenic	L1PA5|LINE|L1	-1750	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
133604	chr2	122018151	122018250	+	0	NA	Intergenic	L1PA2|LINE|L1	262549	NM_004622	7247		NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
96871	chr17	42068851	42069680	+	0	NA	intron (NM_001378270, intron 1 of 8)	intron (NM_001378270, intron 1 of 8)	-18664	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
81262	chr16	4622471	4623080	+	0	NA	Intergenic	AluSz|SINE|Alu	-2049	NM_001142289	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
129595	chr2	70084801	70085550	+	0	NA	intron (NR_033872, intron 2 of 10)	intron (NR_033872, intron 2 of 10)	1840	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
12817	chr1	109981721	109982250	+	0	NA	Intergenic	Intergenic	-2780	NM_001242673	10768		NM_006621	ENSG00000168710	AHCYL1	DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA	adenosylhomocysteinase like 1	protein-coding
204732	chr7	5561001	5561200	+	0	NA	Intergenic	Intergenic	-30499	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
160866	chr3	33429421	33429680	+	0	NA	intron (NM_014517, intron 1 of 15)	AluJb|SINE|Alu	10828	NM_001128160	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
203252	chr6	169371401	169371600	+	0	NA	Intergenic	Intergenic	-117654	NR_167745	7058		NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
213060	chr7	131068901	131069690	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	37735	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
132362	chr2	105757421	105758180	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	12737	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
103561	chr17	78675351	78675450	+	0	NA	3' UTR (NM_001365037, exon 14 of 14)	3' UTR (NM_001365037, exon 14 of 14)	41632	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
133954	chr2	130576021	130576880	+	0	NA	intron (NR_027314, intron 1 of 1)	intron (NR_027314, intron 1 of 1)	5601	NR_027314	150527		NR_027313	ENSG00000290614	PRSS40A	TISP43	serine protease 40A (pseudogene)	pseudo
145178	chr20	38867121	38867480	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-59117	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
167317	chr3	128730571	128731080	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	4642	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
226508	chr9	71794871	71795890	+	0	NA	Intergenic	Intergenic	-26867	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
197234	chr6	69732701	69732900	+	0	NA	intron (NM_001363722, intron 7 of 15)	intron (NM_001363722, intron 7 of 15)	63666	NM_001363722	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
41294	chr11	65866651	65867130	+	0	NA	TTS (NM_001350283)	TTS (NM_001350283)	5910	NM_016938	30008		NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin extracellular matrix protein 2	protein-coding
124806	chr2	7516951	7517680	+	0	NA	Intergenic	Intergenic	96054	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
79259	chr16	466521	466780	+	0	NA	intron (NM_001370401, intron 2 of 14)	intron (NM_001370401, intron 2 of 14)	-8274	NM_001142272	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
96178	chr17	39727701	39728700	+	0	NA	TTS (NM_001330206)	TTS (NM_001330206)	1705	NR_039881	100616132		NR_039881	ENSG00000265178	MIR4728	-	microRNA 4728	ncRNA
35715	chr11	1942771	1942930	+	0	NA	Intergenic	Intergenic	-4482	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
195946	chr6	41930701	41931080	+	0	NA	intron (NM_004053, intron 4 of 6)	intron (NM_004053, intron 4 of 6)	9391	NM_004053	705		NM_004053	ENSG00000112578	BYSL	BYSTIN|Enp1	bystin like	protein-coding
150027	chr21	37265721	37265980	+	0	NA	intron (NM_006052, intron 1 of 7)	L1MC4|LINE|L1	1484	NM_006052	10311		NM_006052	ENSG00000157538	VPS26C	DCRA|DSCR3|DSCRA	VPS26 endosomal protein sorting factor C	protein-coding
152245	chr22	20205001	20205580	+	0	NA	promoter-TSS (NR_038460)	promoter-TSS (NR_038460)	-372	NR_038460	284865		NR_038460	ENSG00000249923	LINC02891	lnc-RTN4R-1	long intergenic non-protein coding RNA 2891	ncRNA
174766	chr4	47533771	47534130	+	0	NA	intron (NM_020453, intron 5 of 22)	L1MC5a|LINE|L1	48675	NM_020453	57205		NM_020453	ENSG00000145246	ATP10D	ATPVD	ATPase phospholipid transporting 10D (putative)	protein-coding
67602	chr14	72518371	72519550	+	0	NA	intron (NM_001370288, intron 15 of 16)	intron (NM_001370288, intron 15 of 16)	2140	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
99156	chr17	49362001	49363350	+	0	NA	promoter-TSS (NR_135579)	promoter-TSS (NR_135579)	-202	NM_014897	22834		NM_014897	ENSG00000198740	ZNF652	-	zinc finger protein 652	protein-coding
66937	chr14	65478451	65478900	+	0	NA	intron (NM_004480, intron 2 of 9)	MER57E1|LTR|ERV1	7573	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
162736	chr3	49035271	49035430	+	0	NA	intron (NM_001320580, intron 7 of 10)	AluJo|SINE|Alu	-5952	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
35674	chr11	1876471	1876980	+	0	NA	intron (NM_001013254, intron 1 of 10)	intron (NM_001013254, intron 1 of 10)	-3320	NR_107001	102465993		NR_107001	ENSG00000284594	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
177719	chr4	122158321	122158580	+	0	NA	intron (NM_001384125, intron 2 of 87)	intron (NM_001384125, intron 2 of 87)	6119	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
177687	chr4	121819301	121819700	+	0	NA	exon (NM_001237, exon 5 of 8)	exon (NM_001237, exon 5 of 8)	4383	NM_001237	890		NM_001237	ENSG00000145386	CCNA2	CCN1|CCNA	cyclin A2	protein-coding
44629	chr11	109064821	109065100	+	0	NA	Intergenic	AluSx|SINE|Alu	-357230	NM_207645	399947		NM_207645	ENSG00000185742	C11orf87	LOH11CR1A|NEURIM1	chromosome 11 open reading frame 87	protein-coding
28100	chr10	43390621	43391630	+	0	NA	intron (NM_001098204, intron 3 of 3)	AluSx1|SINE|Alu	5706	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
66455	chr14	61547171	61547730	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	22744	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
146915	chr20	51607371	51607530	+	0	NA	intron (NM_006045, intron 26 of 27)	intron (NM_006045, intron 26 of 27)	-44611	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
191884	chr6	15330171	15330530	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	81495	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
200420	chr6	134905951	134906430	+	0	NA	Intergenic	AluSz6|SINE|Alu	43911	NM_170771	64577		NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding
28468	chr10	49335421	49335680	+	0	NA	Intergenic	Intergenic	36380	NM_001135196	118461		NM_199459	ENSG00000177354	C10orf71	CEFIP	chromosome 10 open reading frame 71	protein-coding
195690	chr6	38637771	38637930	+	0	NA	intron (NM_052893, intron 1 of 11)	intron (NM_052893, intron 1 of 11)	2079	NM_052893	114781		NM_052893	ENSG00000183826	BTBD9	dJ322I12.1	BTB domain containing 9	protein-coding
2353	chr1	9279751	9279850	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-13094	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
219527	chr8	74984401	74984600	+	0	NA	promoter-TSS (NM_031461)	promoter-TSS (NM_031461)	-5	NM_031461	83690		NM_031461	ENSG00000121005	CRISPLD1	CRISP-10|CRISP10|LCRISP1	cysteine rich secretory protein LCCL domain containing 1	protein-coding
188326	chr5	151221321	151222230	+	0	NA	intron (NR_160730, intron 3 of 3)	intron (NR_160730, intron 3 of 3)	2317	NM_015621	26112		NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
85599	chr16	53518421	53519950	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	-15881	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
81591	chr16	10329321	10329880	+	0	NA	Intergenic	AluSp|SINE|Alu	-56461	NM_024997	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
133703	chr2	127295621	127296430	+	0	NA	Intergenic	MLT1C-int|LTR|ERVL-MaLR	-1881	NM_001303416	2071		NM_000122	ENSG00000163161	ERCC3	BTF2|GTF2H|RAD25|Ssl2|TFIIH|TTD2|XPB	ERCC excision repair 3, TFIIH core complex helicase subunit	protein-coding
115041	chr19	14116971	14119300	+	0	NA	promoter-TSS (NM_002730)	promoter-TSS (NM_002730)	-373	NM_002730	5566		NM_002730	ENSG00000072062	PRKACA	CAFD1|PKACA|PPNAD4	protein kinase cAMP-activated catalytic subunit alpha	protein-coding
205540	chr7	19754571	19754800	+	0	NA	intron (NM_001366627, intron 1 of 4)	intron (NM_001366627, intron 1 of 4)	18096	NM_152774	256130		NM_152774	ENSG00000173452	TMEM196	-	transmembrane protein 196	protein-coding
197380	chr6	73487321	73487700	+	0	NA	intron (NM_133645, intron 10 of 12)	L1MB2|LINE|L1	25773	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
47359	chr12	2064051	2064450	+	0	NA	intron (NM_199460, intron 1 of 49)	intron (NM_199460, intron 1 of 49)	10965	NM_199460	775		NM_000719	ENSG00000151067	CACNA1C	CACH2|CACN2|CACNA1C-IT2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|NEDHLSS|TS|TS. LQT8	calcium voltage-gated channel subunit alpha1 C	protein-coding
198814	chr6	109047121	109047680	+	0	NA	intron (NM_014454, intron 1 of 9)	SVA_D|Retroposon|SVA	-37845	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
16127	chr1	153655701	153655900	+	0	NA	Intergenic	AluJr|SINE|Alu	-2854	NR_052020	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
38333	chr11	44542251	44542630	+	0	NA	Intergenic	Intergenic	-23223	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
84316	chr16	30121171	30121330	+	0	NA	intron (NM_001040056, intron 2 of 6)	AluSx|SINE|Alu	1970	NM_001040056	5595		NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
87840	chr16	75651301	75652430	+	0	NA	intron (NR_144545, intron 1 of 2)	intron (NR_144545, intron 1 of 2)	4092	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
222313	chr8	133495621	133495880	+	0	NA	intron (NM_173344, intron 3 of 9)	LTR40c|LTR|ERVL	76137	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
165799	chr3	105808401	105808600	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	59091	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
192408	chr6	24845171	24846230	+	0	NA	intron (NM_001286447, intron 12 of 13)	intron (NM_001286447, intron 12 of 13)	31570	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
175397	chr4	70836121	70836380	+	0	NA	exon (NM_002092, exon 2 of 10)	exon (NM_002092, exon 2 of 10)	3011	NM_001098477	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
12034	chr1	97918321	97918700	+	0	NA	intron (NM_001160301, intron 1 of 5)	intron (NM_001160301, intron 1 of 5)	2524	NM_000110	1806		NM_000110	ENSG00000188641	DPYD	DHP|DHPDHASE|DPD|DYPD	dihydropyrimidine dehydrogenase	protein-coding
220015	chr8	90626501	90627080	+	0	NA	intron (NM_001146273, intron 1 of 1)	AluSg|SINE|Alu	19115	NM_001146273	169200		NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
142026	chr20	1663551	1664150	+	0	NA	Intergenic	Intergenic	-6071	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
179489	chr4	184583851	184584250	+	0	NA	TTS (NR_131967)	TTS (NR_131967)	40822	NR_131965	105377586		NR_131965	ENSG00000254233	LINC02365	LVCAT8	long intergenic non-protein coding RNA 2365	ncRNA
29152	chr10	68709051	68709350	+	0	NA	Intergenic	AluSz6|SINE|Alu	-12039	NM_001282960	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
8955	chr1	44377971	44378430	+	0	NA	Intergenic	Intergenic	-22921	NM_001301700	79033		NM_024066	ENSG00000117419	ERI3	PINT1|PRNPIP	ERI1 exoribonuclease family member 3	protein-coding
39739	chr11	61814451	61815790	+	0	NA	TTS (NR_031729)	TTS (NR_031729)	120	NR_031729	100302263		NR_031729	ENSG00000284416	MIR1908	MIRN1908|hsa-mir-1908|mir-1908	microRNA 1908	ncRNA
93185	chr17	17804201	17804650	+	0	NA	intron (NM_030665, intron 4 of 5)	L2c|LINE|L2	9120	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
48810	chr12	12025051	12025630	+	0	NA	Intergenic	L1MEg|LINE|L1	-24521	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
163424	chr3	50568601	50569990	+	0	NA	promoter-TSS (NM_001377425)	promoter-TSS (NM_001377425)	143	NM_001317851	51409		NM_016173	ENSG00000114735	HEMK1	HEMK|MPRMC|MTQ1	HemK methyltransferase family member 1	protein-coding
54527	chr12	92122651	92123200	+	0	NA	intron (NR_132341, intron 1 of 4)	MLT2B1|LTR|ERVL	18788	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
219370	chr8	70374201	70375350	+	0	NA	intron (NM_001321703, intron 1 of 22)	AluJr|SINE|Alu	28615	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
232963	chr9	136958951	136959250	+	0	NA	Intergenic	Intergenic	6827	NM_178536	286256		NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
186857	chr5	139472421	139473050	+	0	NA	exon (NM_001365197, exon 2 of 2)	exon (NM_001365197, exon 2 of 2)	1731	NM_001365197	111064649		NM_001365197	ENSG00000283288	SMIM33	-	small integral membrane protein 33	protein-coding
178265	chr4	143700871	143701030	+	0	NA	promoter-TSS (NM_001168235)	promoter-TSS (NM_001168235)	-275	NM_001168235	166752		NM_001168235	ENSG00000183090	FREM3	-	FRAS1 related extracellular matrix 3	protein-coding
219845	chr8	81855801	81856000	+	0	NA	Intergenic	MER51A|LTR|ERV1	-13614	NM_022133	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
27167	chr10	28530421	28530900	+	0	NA	intron (NR_033805, intron 1 of 2)	AluSz|SINE|Alu	1694	NR_033805	220906		NR_033805		WAC-AS1	-	WAC antisense RNA 1 (head to head)	ncRNA
157125	chr22	42664701	42665130	+	0	NA	Intergenic	MIRb|SINE|MIR	-15523	NM_000398	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
26014	chr10	12240771	12240930	+	0	NA	intron (NM_006023, intron 10 of 12)	L1ME4b|LINE|L1	44662	NM_006023	8872		NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
83132	chr16	22670421	22670700	+	0	NA	Intergenic	Intergenic	124862	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
468	chr1	1148301	1148700	+	0	NA	Intergenic	Intergenic	11483	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
222019	chr8	130070701	130071700	+	0	NA	intron (NM_001362924, intron 28 of 30)	FLAM_C|SINE|Alu	13568	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
15208	chr1	149365971	149366130	+	0	NA	Intergenic	L1PA15|LINE|L1	-24571	NM_001364012	100996717		NM_001364012	ENSG00000286219	NOTCH2NLC	ETM6|N2N|NIID|NOTCH2NL|NOTCH2NLA|OPDM3	notch 2 N-terminal like C	protein-coding
9226	chr1	45725001	45725200	+	0	NA	intron (NM_001145349, intron 5 of 9)	SVA_E|Retroposon|SVA	25553	NM_005897	3652		NM_005897	ENSG00000197429	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
162113	chr3	46925451	46925750	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	43351	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
125622	chr2	19351521	19351780	+	0	NA	3' UTR (NM_145260, exon 3 of 3)	3' UTR (NM_145260, exon 3 of 3)	3221	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
66306	chr14	61405471	61405730	+	0	NA	intron (NM_006255, intron 2 of 13)	AluSx|SINE|Alu	84157	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
39568	chr11	61133501	61134000	+	0	NA	intron (NM_017966, intron 3 of 4)	intron (NM_017966, intron 3 of 4)	27676	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
111662	chr19	4246351	4248150	+	0	NA	intron (NM_018074, intron 1 of 7)	intron (NM_018074, intron 1 of 7)	170	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
205273	chr7	8199351	8199530	+	0	NA	intron (NR_146926, intron 6 of 13)	AluSx1|SINE|Alu	62727	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
184121	chr5	94574521	94575830	+	0	NA	intron (NM_001385723, intron 1 of 4)	intron (NM_001385723, intron 1 of 4)	42950	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
21610	chr1	206564971	206565730	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	8186	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
76797	chr15	77026921	77027180	+	0	NA	intron (NR_135552, intron 5 of 11)	intron (NR_135552, intron 5 of 11)	31924	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
101981	chr17	74753001	74753500	+	0	NA	intron (NM_004252, intron 1 of 5)	MIRb|SINE|MIR	4622	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
183294	chr5	76550501	76551230	+	0	NA	intron (NM_001285460, intron 1 of 34)	SVA_B|Retroposon|SVA	3456	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
154823	chr22	37054021	37054280	+	0	NA	intron (NM_001282685, intron 2 of 6)	intron (NM_001282685, intron 2 of 6)	2414	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
38654	chr11	46375751	46376100	+	0	NA	promoter-TSS (NR_039837)	promoter-TSS (NR_039837)	-477	NR_039837	100616368		NR_039837	ENSG00000264102	MIR4688	mir-4688	microRNA 4688	ncRNA
14220	chr1	143206721	143207050	+	0	NA	Intergenic	Intergenic	215707	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
26837	chr10	24707651	24707950	+	0	NA	intron (NR_160021, intron 2 of 26)	L2c|LINE|L2	14948	NM_001367453	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
98087	chr17	45586971	45587200	+	0	NA	Intergenic	Intergenic	14777	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
160898	chr3	33804701	33805100	+	0	NA	intron (NM_001256192, intron 1 of 5)	intron (NM_001256192, intron 1 of 5)	6270	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
124587	chr2	769801	770000	+	0	NA	Intergenic	Intergenic	-92494	NM_152834	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
80804	chr16	3413971	3414330	+	0	NA	Intergenic	Intergenic	12935	NM_001347868	7727		NM_003450	ENSG00000103343	ZNF174	ZSCAN8	zinc finger protein 174	protein-coding
153976	chr22	30373201	30374180	+	0	NA	exon (NM_001318334, exon 8 of 12)	exon (NM_001318334, exon 8 of 12)	4215	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
16099	chr1	153617201	153617930	+	0	NA	Intergenic	Intergenic	-1240	NM_020672	57402		NM_020672	ENSG00000189334	S100A14	BCMP84|S100A15	S100 calcium binding protein A14	protein-coding
167084	chr3	127288901	127289100	+	0	NA	promoter-TSS (NM_001362810)	promoter-TSS (NM_001362810)	-954	NM_001362810	100419008		NM_001362810	ENSG00000239620	PRR20G	-	proline rich 20G	protein-coding
214550	chr7	150552801	150553400	+	0	NA	Intergenic	L1PREC2|LINE|L1	-14270	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
122912	chr19	50628821	50629080	+	0	NA	intron (NM_032298, intron 4 of 8)	AluSp|SINE|Alu	9095	NM_032298	84258		NM_032298	ENSG00000213023	SYT3	SytIII	synaptotagmin 3	protein-coding
108911	chr18	79434151	79434650	+	0	NA	intron (NM_172389, intron 3 of 9)	intron (NM_172389, intron 3 of 9)	34101	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
104051	chr17	80142951	80143800	+	0	NA	intron (NM_014740, intron 2 of 11)	MER21A|LTR|ERVL	3753	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
35927	chr11	2443901	2446800	+	0	NA	exon (NM_000218, exon 1 of 16)	exon (NM_000218, exon 1 of 16)	342	NM_000218	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
99398	chr17	49994401	49994700	+	0	NA	intron (NM_005220, intron 1 of 2)	CpG-11405	674	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
150249	chr21	41423401	41423900	+	0	NA	intron (NM_001144925, intron 3 of 18)	LTR17|LTR|ERV1	-2381	NM_001178046	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
118578	chr19	36294871	36295030	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-16393	NR_029389	100134317		NR_029389		LOC100134317	-	uncharacterized LOC100134317	ncRNA
122283	chr19	49081751	49082050	+	0	NA	Intergenic	MST-int|LTR|ERVL-MaLR	-3551	NM_003089	6625		NM_003089	ENSG00000104852	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein U1 subunit 70	protein-coding
7529	chr1	34857771	34857930	+	0	NA	intron (NM_001164824, intron 1 of 2)	MER1B|DNA|hAT-Charlie	1195	NM_001164824	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
174798	chr4	48085951	48086050	+	0	NA	intron (NM_003328, intron 10 of 14)	LTR1F|LTR|ERV1	48250	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
227117	chr9	85940321	85942180	+	0	NA	promoter-TSS (NM_001321882)	promoter-TSS (NM_001321882)	104	NM_024635	60560		NM_021929	ENSG00000135040	NAA35	EGAP|MAK10|MAK10P|bA379P1.1	N-alpha-acetyltransferase 35, NatC auxiliary subunit	protein-coding
190707	chr6	237601	237800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-32216	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
228787	chr9	111633471	111633630	+	0	NA	intron (NM_004125, intron 1 of 2)	intron (NM_004125, intron 1 of 2)	2198	NR_037148	548645		NM_001015882	ENSG00000059769	DNAJC25	bA16L21.2.1	DnaJ heat shock protein family (Hsp40) member C25	protein-coding
195842	chr6	41417571	41417730	+	0	NA	Intergenic	Intergenic	82042	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
124902	chr2	8475021	8475800	+	0	NA	Intergenic	Intergenic	108382	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
73822	chr15	48975681	48976480	+	0	NA	Intergenic	CpG	-12161	NM_203349	399694		NM_203349	ENSG00000185634	SHC4	RaLP|SHCD	SHC adaptor protein 4	protein-coding
230112	chr9	127696471	127696830	+	0	NA	TTS (NM_001374314)	TTS (NM_001374314)	-5855	NR_037473	100500872		NR_037473	ENSG00000283874	MIR3911	mir-3911	microRNA 3911	ncRNA
80264	chr16	2227101	2227500	+	0	NA	intron (NM_004424, intron 1 of 13)	AluSx|SINE|Alu	3709	NM_004424	1877		NM_004424	ENSG00000167967	E4F1	E4F	E4F transcription factor 1	protein-coding
38155	chr11	35620051	35620450	+	0	NA	3' UTR (NM_014344, exon 1 of 1)	3' UTR (NM_014344, exon 1 of 1)	1790	NM_014344	24147		NM_014344	ENSG00000179431	FJX1	-	four-jointed box kinase 1	protein-coding
73993	chr15	52030321	52030980	+	0	NA	intron (NM_002748, intron 1 of 5)	AluSz|SINE|Alu	11431	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
41743	chr11	66676521	66676780	+	0	NA	intron (NM_031492, intron 2 of 3)	intron (NM_031492, intron 2 of 3)	1237	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
75514	chr15	66477601	66477800	+	0	NA	intron (NM_002755, intron 5 of 10)	intron (NM_002755, intron 5 of 10)	19334	NR_039737	100616149		NR_039737	ENSG00000266589	MIR4512	-	microRNA 4512	ncRNA
185151	chr5	119323951	119325380	+	0	NA	intron (NM_001286815, intron 2 of 2)	intron (NM_001286815, intron 2 of 2)	-8510	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
18013	chr1	160562801	160563200	+	0	NA	intron (NM_001184882, intron 1 of 5)	L1PA11|LINE|L1	16496	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
124652	chr2	2657151	2657650	+	0	NA	Intergenic	Intergenic	-326125	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
221717	chr8	127240671	127241030	+	0	NA	Intergenic	Intergenic	-3787	NR_117099	103021164		NR_117099		CASC21	CARLO2|CARLo-2|LINC01244	cancer susceptibility 21	ncRNA
48940	chr12	12722301	12722930	+	0	NA	TTS (NM_004064)	TTS (NM_004064)	-3302	NM_001130415	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
214778	chr7	151110871	151111630	+	0	NA	intron (NM_001350103, intron 1 of 18)	intron (NM_001350103, intron 1 of 18)	-3388	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
167805	chr3	133576071	133576380	+	0	NA	intron (NM_001282764, intron 2 of 4)	intron (NM_001282764, intron 2 of 4)	1791	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
160962	chr3	36990421	36990780	+	0	NA	3' UTR (NM_014805, exon 1 of 1)	3' UTR (NM_014805, exon 1 of 1)	2531	NM_014805	9852		NM_014805	ENSG00000178567	EPM2AIP1	-	EPM2A interacting protein 1	protein-coding
4485	chr1	21620501	21620700	+	0	NA	intron (NM_001350524, intron 5 of 27)	intron (NM_001350524, intron 5 of 27)	31298	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
14421	chr1	144363051	144363350	+	0	NA	Intergenic	AluSz|SINE|Alu	10459	NM_001164261	645142		NM_001164261	ENSG00000289549	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding
40292	chr11	63858471	63858630	+	0	NA	intron (NM_004954, intron 1 of 16)	AluSg|SINE|Alu	19440	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
32314	chr10	102160851	102161150	+	0	NA	exon (NM_001284388, exon 10 of 13)	exon (NM_001284388, exon 10 of 13)	8611	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
118750	chr19	38336601	38338000	+	0	NA	exon (NM_021185, exon 2 of 29)	exon (NM_021185, exon 2 of 29)	1470	NM_021185	57828		NM_021185	ENSG00000099338	CATSPERG	C19orf15	cation channel sperm associated auxiliary subunit gamma	protein-coding
33057	chr10	110872301	110873550	+	0	NA	intron (NM_145341, intron 1 of 12)	intron (NM_145341, intron 1 of 12)	997	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
167661	chr3	129890151	129890830	+	0	NA	intron (NM_001349271, intron 1 of 4)	MIRc|SINE|MIR	3086	NM_001128224	23023		NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
56307	chr12	112420851	112420950	+	0	NA	intron (NM_002834, intron 1 of 15)	intron (NM_002834, intron 1 of 15)	1953	NM_001330437	5781		NM_002834	ENSG00000179295	PTPN11	BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2	protein tyrosine phosphatase non-receptor type 11	protein-coding
197499	chr6	75616651	75616750	+	0	NA	intron (NM_015571, intron 1 of 23)	AluSg|SINE|Alu	14820	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
93684	chr17	19360701	19360980	+	0	NA	intron (NM_001368769, intron 1 of 6)	L2b|LINE|L2	1883	NM_001321219	27077		NM_015681	ENSG00000108641	B9D1	B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1	B9 domain containing 1	protein-coding
139549	chr2	224909871	224910550	+	0	NA	intron (NM_001363762, intron 3 of 55)	intron (NM_001363762, intron 3 of 55)	36839	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
209547	chr7	77239551	77239700	+	0	NA	intron (NM_020879, intron 3 of 18)	intron (NM_020879, intron 3 of 18)	-39806	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
210440	chr7	100099621	100101000	+	0	NA	5' UTR (NM_182776, exon 1 of 14)	5' UTR (NM_182776, exon 1 of 14)	470	NM_182776	4176		NM_005916	ENSG00000166508	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146|PPP1R104	minichromosome maintenance complex component 7	protein-coding
221689	chr8	126557501	126559530	+	0	NA	promoter-TSS (NR_156466)	promoter-TSS (NR_156466)	-37	NR_156466	157638		NM_174911	ENSG00000168672	LRATD2	BCMP101|FAM84B|NSE2	LRAT domain containing 2	protein-coding
181847	chr5	53041051	53041750	+	0	NA	intron (NR_073104, intron 2 of 28)	intron (NR_073104, intron 2 of 28)	52048	NM_002203	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
15161	chr1	148958021	148958480	+	0	NA	intron (NM_001350520, intron 1 of 39)	L2a|LINE|L2	5793	NM_001350520	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
155853	chr22	39457121	39458630	+	0	NA	intron (NM_002409, intron 1 of 1)	CpG	863	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
11169	chr1	87084251	87084580	+	0	NA	intron (NM_001134492, intron 3 of 4)	intron (NM_001134492, intron 3 of 4)	-45350	NR_026988	339524		NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
164103	chr3	56645171	56645450	+	0	NA	intron (NM_015224, intron 7 of 16)	intron (NM_015224, intron 7 of 16)	18736	NM_015224	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
179390	chr4	183655351	183655450	+	0	NA	intron (NM_152682, intron 2 of 6)	AluY|SINE|Alu	3785	NM_152682	201965		NM_152682	ENSG00000182552	RWDD4	FAM28A|RWDD4A	RWD domain containing 4	protein-coding
224009	chr9	2621221	2621800	+	0	NA	promoter-TSS (NM_001018056)	promoter-TSS (NM_001018056)	-277	NM_003383	7436		NM_003383	ENSG00000147852	VLDLR	CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH	very low density lipoprotein receptor	protein-coding
45036	chr11	117033071	117033430	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	65178	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
43630	chr11	83284071	83284230	+	0	NA	intron (NM_001286116, intron 1 of 8)	intron (NM_001286116, intron 1 of 8)	2257	NM_001286120	60492		NM_021825	ENSG00000137500	CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
120163	chr19	42241851	42243870	+	0	NA	promoter-TSS (NM_019884)	promoter-TSS (NM_019884)	-258	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
40561	chr11	64341751	64341850	+	0	NA	TTS (NR_106977)	TTS (NR_106977)	104	NR_106977	102466815		NR_106977	ENSG00000278359	MIR7155	hsa-mir-7155	microRNA 7155	ncRNA
82649	chr16	19169251	19169350	+	0	NA	intron (NM_016524, intron 1 of 7)	intron (NM_016524, intron 1 of 7)	1060	NM_016524	51760		NM_016524	ENSG00000103528	SYT17	Syt-17|sytXVII	synaptotagmin 17	protein-coding
229296	chr9	120844271	120844430	+	0	NA	non-coding (NR_152406, exon 1 of 4)	non-coding (NR_152406, exon 1 of 4)	1275	NR_024408	253039		NR_024408	ENSG00000293514	CUTALP	PSMD5-AS1	cutA divalent cation tolerance like, pseudogene	pseudo
221560	chr8	125090871	125092650	+	0	NA	promoter-TSS (NM_001330609)	promoter-TSS (NM_001330609)	32	NM_014846	9897		NM_014846	ENSG00000164961	WASHC5	KIAA0196|RTSC|RTSC1|SPG8	WASH complex subunit 5	protein-coding
151725	chr22	17763501	17763700	+	0	NA	TTS (NR_036168)	TTS (NR_036168)	659	NR_036168	100423025		NR_036168	ENSG00000264757	MIR3198-1	MIR3198|mir-3198-1	microRNA 3198-1	ncRNA
64526	chr14	24433001	24433200	+	0	NA	intron (NM_015299, intron 5 of 7)	intron (NM_015299, intron 5 of 7)	3146	NM_015299	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
172880	chr4	3399901	3400100	+	0	NA	intron (NM_198227, intron 2 of 15)	MLT1I|LTR|ERVL-MaLR	29802	NM_198227	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
9280	chr1	46394121	46394700	+	0	NA	promoter-TSS (NM_001441)	promoter-TSS (NM_001441)	93	NM_001441	2166		NM_001441	ENSG00000117480	FAAH	FAAH-1|FAAH1|PSAB	fatty acid amide hydrolase	protein-coding
15868	chr1	151456551	151457050	+	0	NA	intron (NM_015100, intron 1 of 18)	AluSx|SINE|Alu	2694	NM_001194937	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
105021	chr17	82046071	82046630	+	0	NA	Intergenic	Intergenic	5461	NM_002917	5986		NM_002917	ENSG00000169733	RFNG	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
88247	chr16	82455051	82455150	+	0	NA	Intergenic	L2a|LINE|L2	-171869	NM_001257	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
215520	chr7	158729151	158730050	+	0	NA	Intergenic	Intergenic	-24796	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
16975	chr1	155961921	155962400	+	0	NA	exon (NM_001350112, exon 10 of 22)	exon (NM_001350112, exon 10 of 22)	-10824	NR_106796	102465442		NR_106796	ENSG00000277817	MIR6738	hsa-mir-6738	microRNA 6738	ncRNA
228619	chr9	105581571	105581730	+	0	NA	intron (NR_147213, intron 3 of 9)	L1PA2|LINE|L1	23519	NM_001351496	2218		NM_006731	ENSG00000106692	FKTN	CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4	fukutin	protein-coding
199697	chr6	124804951	124805150	+	0	NA	intron (NM_153355, intron 4 of 5)	L1PA3|LINE|L1	-157495	NR_136734	154214		NM_152553	ENSG00000146373	RNF217	C6orf172|IBRDC1|OSTL|dJ84N20.1	ring finger protein 217	protein-coding
224303	chr9	6495651	6495750	+	0	NA	intron (NR_046386, intron 11 of 16)	intron (NR_046386, intron 11 of 16)	82501	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
194418	chr6	33075561	33076850	+	0	NA	intron (NM_002121, intron 1 of 5).5	intron (NM_002121, intron 1 of 5).5	215	NM_002121	3115		NM_002121	ENSG00000223865	HLA-DPB1	DPB1|HLA-DP|HLA-DP1B|HLA-DPB	major histocompatibility complex, class II, DP beta 1	protein-coding
209825	chr7	88218801	88219300	+	0	NA	non-coding (NR_120517, exon 2 of 2)	non-coding (NR_120517, exon 2 of 2)	988	NM_003130	6717		NM_003130	ENSG00000075142	SRI	CP-22|CP22|SCN|V19	sorcin	protein-coding
34363	chr10	132229551	132230930	+	0	NA	intron (NM_173575, intron 2 of 11)	intron (NM_173575, intron 2 of 11)	18868	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
181525	chr5	43046151	43047250	+	0	NA	intron (NR_104651, intron 2 of 2)	intron (NR_104651, intron 2 of 2)	-3453	NM_001382352	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
61640	chr13	73864621	73864880	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	269179	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
47217	chr12	873971	874330	+	0	NA	intron (NM_014823, intron 9 of 25)	AluJo|SINE|Alu	58926	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
113957	chr19	10766651	10766950	+	0	NA	intron (NM_001005362, intron 2 of 19)	intron (NM_001005362, intron 2 of 19)	-13454	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
37289	chr11	14722001	14722400	+	0	NA	intron (NM_001363569, intron 1 of 15)	L1PA4|LINE|L1	78396	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
223980	chr9	2027971	2028380	+	0	NA	intron (NM_001289396, intron 1 of 33)	intron (NM_001289396, intron 1 of 33)	6230	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
191005	chr6	3071521	3071980	+	0	NA	intron (NM_001354934, intron 1 of 11)	intron (NM_001354934, intron 1 of 11)	3256	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
142844	chr20	17579551	17579850	+	0	NA	intron (NM_006870, intron 1 of 3)	intron (NM_006870, intron 1 of 3)	9625	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
24438	chr1	243674171	243674330	+	0	NA	intron (NM_005465, intron 3 of 13)	L1MC5a|LINE|L1	169032	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
183439	chr5	78953321	78953580	+	0	NA	intron (NM_000046, intron 4 of 7)	MIR|SINE|MIR	31860	NM_000046	411		NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
194685	chr6	33683051	33684730	+	0	NA	intron (NM_002224, intron 35 of 57)	intron (NM_002224, intron 35 of 57)	-14238	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
12947	chr1	110786851	110788000	+	0	NA	Intergenic	L1M2a|LINE|L1	-83774	NM_001040033	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
177552	chr4	119204371	119204930	+	0	NA	intron (NR_125931, intron 1 of 2)	intron (NR_125931, intron 1 of 2)	-7977	NM_019050	54532		NM_019050	ENSG00000145390	USP53	PFIC7	ubiquitin specific peptidase 53	protein-coding
236620	chrX	74535271	74536190	+	0	NA	Intergenic	Intergenic	78894	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
37938	chr11	34308751	34309050	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	49110	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
148626	chr21	5697651	5698350	+	0	NA	Intergenic	Intergenic	128796	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
92721	chr17	14208521	14208780	+	0	NA	TTS (NM_001303)	TTS (NM_001303)	28212	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
136126	chr2	173956401	173957100	+	0	NA	intron (NM_001172712, intron 3 of 6)	intron (NM_001172712, intron 3 of 6)	7130	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
229268	chr9	119626821	119627080	+	0	NA	Intergenic	L1PA2|LINE|L1	-257515	NM_014618	1620		NM_014618	ENSG00000078725	BRINP1	DBC1|DBCCR1|FAM5A	BMP/retinoic acid inducible neural specific 1	protein-coding
215377	chr7	157410451	157410550	+	0	NA	intron (NM_001363676, intron 6 of 6)	intron (NM_001363676, intron 6 of 6)	-55731	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
113607	chr19	10297951	10298750	+	0	NA	Intergenic	AluJo|SINE|Alu	8398	NM_003259	7087		NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	intercellular adhesion molecule 5	protein-coding
235241	chrX	41443621	41444000	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-3533	NM_001378477	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
133260	chr2	113431471	113432180	+	0	NA	Intergenic	Intergenic	-5866	NM_001330340	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
178189	chr4	142398151	142398350	+	0	NA	intron (NM_001385379, intron 2 of 21)	AluY|SINE|Alu	4883	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
81802	chr16	11543951	11544400	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-16928	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
122816	chr19	50388521	50389300	+	0	NA	intron (NR_046402, intron 1 of 25)	AluSg|SINE|Alu	4563	NR_046402	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
207915	chr7	50646071	50646250	+	0	NA	intron (NM_001371008, intron 4 of 15)	intron (NM_001371008, intron 4 of 15)	59141	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
56936	chr12	120459221	120459880	+	0	NA	intron (NM_176818, intron 3 of 3)	intron (NM_176818, intron 3 of 3)	10198	NM_003769	8683		NM_003769	ENSG00000111786	SRSF9	SFRS9|SRp30c	serine and arginine rich splicing factor 9	protein-coding
202350	chr6	157592651	157593250	+	0	NA	intron (NM_024630, intron 2 of 8)	CpG	63818	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
108532	chr18	74407751	74408050	+	0	NA	Intergenic	L1MEd|LINE|L1	-1548	NR_131977	101927606		NR_131977	ENSG00000259779	LINC01922	-	long intergenic non-protein coding RNA 1922	ncRNA
79317	chr16	563151	563250	+	0	NA	intron (NM_145270, intron 1 of 2)	intron (NM_145270, intron 1 of 2)	2806	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
122531	chr19	49630621	49630880	+	0	NA	Intergenic	AluSx1|SINE|Alu	9393	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
36961	chr11	11242821	11243150	+	0	NA	Intergenic	Intergenic	110265	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
94593	chr17	29725221	29725480	+	0	NA	intron (NM_033389, intron 2 of 14)	AluSc8|SINE|Alu	36082	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
87910	chr16	79089501	79090500	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	510737	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
139988	chr2	230926401	230926980	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1448	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
66552	chr14	62082001	62082200	+	0	NA	intron (NM_001367652, intron 5 of 6)	L2b|LINE|L2	-35257	NR_015358	646113		NM_001039785		LINC00643	-	long intergenic non-protein coding RNA 643	ncRNA
13988	chr1	120617771	120618130	+	0	NA	intron (NR_144516, intron 5 of 43)	intron (NR_144516, intron 5 of 43)	47486	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
63733	chr14	21217871	21219150	+	0	NA	intron (NM_001077443, intron 4 of 7)	AluSx|SINE|Alu	-11610	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
170501	chr3	186185051	186185900	+	0	NA	intron (NM_001346, intron 22 of 24)	(GATGAA)n|Simple_repeat|Simple_repeat	-76386	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
239524	chrY	56847571	56847930	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-106505	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
171119	chr3	195531821	195532080	+	0	NA	intron (NM_006241, intron 1 of 5)	L1MB3|LINE|L1	11375	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
4151	chr1	19353001	19353200	+	0	NA	intron (NM_001206540, intron 6 of 9)	intron (NM_001206540, intron 6 of 9)	40774	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
66044	chr14	58302451	58302750	+	0	NA	intron (NM_023000, intron 3 of 23)	AluSz|SINE|Alu	4045	NM_002892	5926		NM_002892	ENSG00000032219	ARID4A	RBBP-1|RBBP1|RBP-1|RBP1	AT-rich interaction domain 4A	protein-coding
13239	chr1	112695251	112695550	+	0	NA	intron (NM_001286072, intron 11 of 21)	intron (NM_001286072, intron 11 of 21)	11656	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
153872	chr22	30257471	30257630	+	0	NA	Intergenic	Intergenic	8690	NM_001319108	5008		NM_020530	ENSG00000099985	OSM	-	oncostatin M	protein-coding
35175	chr11	779051	779950	+	0	NA	intron (NR_126342, intron 2 of 3)	intron (NR_126342, intron 2 of 3)	1922	NR_126342	171391		NM_138291	ENSG00000255284	GATD1-DT	NS3BP	GATD1 divergent transcript	ncRNA
96718	chr17	41647621	41648300	+	0	NA	Intergenic	Intergenic	-7761	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
92883	chr17	16431721	16432930	+	0	NA	intron (NM_016113, intron 12 of 14)	intron (NM_016113, intron 12 of 14)	-6662	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
101458	chr17	67456971	67457530	+	0	NA	intron (NM_181671, intron 1 of 9)	7SLRNA|srpRNA|srpRNA	-14239	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
108655	chr18	76722671	76723030	+	0	NA	Intergenic	Intergenic	32821	NR_122073	400661		NR_122073	ENSG00000276397	LINC01879	-	long intergenic non-protein coding RNA 1879	ncRNA
50877	chr12	49190601	49190800	+	0	NA	Intergenic	Intergenic	-1376	NM_001270400	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
127731	chr2	43556271	43556430	+	0	NA	non-coding (NR_073394, exon 17 of 36)	non-coding (NR_073394, exon 17 of 36)	39624	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
174509	chr4	39975571	39975830	+	0	NA	intron (NM_001100399, intron 2 of 32)	MER20|DNA|hAT-Charlie	2211	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
151892	chr22	18894051	18894430	+	0	NA	intron (NR_136571, intron 1 of 11)	HSATI|Satellite|Satellite	191	NR_136571	100996432		NR_136571		FAM230F	LINC01663	family with sequence similarity 230 member F	ncRNA
111812	chr19	4473871	4474230	+	0	NA	promoter-TSS (NM_001348169)	promoter-TSS (NM_001348169)	96	NM_001348169	84717		NM_032631	ENSG00000167674	HDGFL2	HDGF-2|HDGF2|HDGFRP2|HRP-2|HRP2	HDGF like 2	protein-coding
65019	chr14	39098571	39098750	+	0	NA	intron (NM_006364, intron 1 of 19)	AluSz|SINE|Alu	-4480	NR_146545	105370458		NR_146545	ENSG00000258651	SEC23A-AS1	-	SEC23A antisense RNA 1	ncRNA
179738	chr5	224101	224700	+	0	NA	exon (NM_001294332, exon 3 of 14)	exon (NM_001294332, exon 3 of 14)	6080	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
61011	chr13	48092751	48093080	+	0	NA	intron (NM_001270629, intron 1 of 6)	intron (NM_001270629, intron 1 of 6)	2189	NM_014166	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
176197	chr4	83508951	83509390	+	0	NA	Intergenic	HERVH48-int|LTR|ERV1	-24070	NM_001345962	84142		NM_139076	ENSG00000163322	ABRAXAS1	ABRA1|CCDC98|FAM175A	abraxas 1, BRCA1 A complex subunit	protein-coding
113365	chr19	8743721	8744180	+	0	NA	Intergenic	Intergenic	12996	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
118882	chr19	38677451	38677880	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	30016	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
59789	chr13	30305621	30305900	+	0	NA	intron (NM_032116, intron 1 of 10)	L2a|LINE|L2	1251	NM_001014380	84056		NM_032116	ENSG00000102781	KATNAL1	-	katanin catalytic subunit A1 like 1	protein-coding
189754	chr5	176620421	176621130	+	0	NA	3' UTR (NM_001363140, exon 7 of 7)	3' UTR (NM_001363140, exon 7 of 7)	8725	NR_036239	100422962		NR_036239	ENSG00000266329	MIR4281	-	microRNA 4281	ncRNA
171060	chr3	195407571	195407830	+	0	NA	intron (NM_012287, intron 1 of 22)	AluJb|SINE|Alu	35320	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
79119	chr16	212821	213280	+	0	NA	intron (NM_018032, intron 3 of 8)	AluJb|SINE|Alu	16399	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
108905	chr18	79429501	79429700	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	29301	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
2361	chr1	9291551	9291980	+	0	NA	Intergenic	Intergenic	-1129	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
2486	chr1	9676671	9677430	+	0	NA	intron (NR_126367, intron 1 of 1)	intron (NR_126367, intron 1 of 1)	10524	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
139576	chr2	224946971	224948030	+	0	NA	promoter-TSS (NM_001290263)	promoter-TSS (NM_001290263)	-451	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
99216	chr17	49572071	49573280	+	0	NA	intron (NR_103773, intron 1 of 2)	intron (NR_103773, intron 1 of 2)	1389	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
130648	chr2	86182551	86182850	+	0	NA	intron (NM_001100169, intron 1 of 14)	AluSz6|SINE|Alu	10408	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
91974	chr17	7410321	7411700	+	0	NA	intron (NM_020795, intron 1 of 6)	intron (NM_020795, intron 1 of 6)	3165	NM_020795	57555		NM_020795	ENSG00000169992	NLGN2	-	neuroligin 2	protein-coding
146378	chr20	49281221	49281800	+	0	NA	TTS (NR_003030)	TTS (NR_003030)	827	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
134356	chr2	136139521	136140350	+	0	NA	Intergenic	Intergenic	-21786	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
5830	chr1	26698001	26699130	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	2550	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
233183	chr9	137195671	137196030	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	4891	NM_001128228	286262		NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79	taperin	protein-coding
85747	chr16	56710301	56710680	+	0	NA	Intergenic	Intergenic	-19639	NM_014669	9688		NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
102423	chr17	75635351	75636150	+	0	NA	promoter-TSS (NR_028439)	promoter-TSS (NR_028439)	-845	NR_028439	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
231755	chr9	132169651	132170180	+	0	NA	intron (NM_032536, intron 2 of 7)	intron (NM_032536, intron 2 of 7)	7857	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
189903	chr5	177354721	177355180	+	0	NA	Intergenic	Intergenic	-2974	NM_006480	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
31204	chr10	91242971	91243330	+	0	NA	intron (NM_032373, intron 3 of 9)	intron (NM_032373, intron 3 of 9)	22487	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
14509	chr1	144571771	144572250	+	0	NA	Intergenic	LOR1a|LTR|ERV1	-20067	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
20551	chr1	198708651	198708950	+	0	NA	intron (NM_002838, intron 10 of 32)	intron (NM_002838, intron 10 of 32)	69760	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
236174	chrX	65533921	65535200	+	0	NA	exon (NM_031206, exon 1 of 14)	exon (NM_031206, exon 1 of 14)	227	NM_001375329	81887		NM_031206	ENSG00000001497	LAS1L	Las1|Las1-like|MRXSWTS|WTS|dJ475B7.2	LAS1 like ribosome biogenesis factor	protein-coding
177635	chr4	121198471	121198630	+	0	NA	intron (NM_001128843, intron 2 of 12)	L2a|LINE|L2	18077	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
172752	chr4	2847401	2848150	+	0	NA	intron (NM_001286645, intron 1 of 17)	MER4A1|LTR|ERV1	3625	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
215871	chr8	7614171	7614530	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-39952	NR_046343								
103114	chr17	77371101	77371480	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	-2047	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
8624	chr1	41678521	41678980	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-194067	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
120310	chr19	43499051	43499350	+	0	NA	intron (NM_198850, intron 4 of 15)	intron (NM_198850, intron 4 of 15)	5633	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
128098	chr2	47908451	47908750	+	0	NA	Intergenic	Intergenic	-2102	NM_001190274	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
29212	chr10	68991251	68991550	+	0	NA	intron (NM_015634, intron 1 of 6)	intron (NM_015634, intron 1 of 6)	2597	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
117933	chr19	33133501	33133900	+	0	NA	intron (NM_173479, intron 1 of 10)	intron (NM_173479, intron 1 of 10)	1586	NM_173479	126248		NM_173479	ENSG00000166359	WDR88	PQWD	WD repeat domain 88	protein-coding
160134	chr3	20052871	20053650	+	0	NA	intron (NM_003884, intron 1 of 17)	AluJb|SINE|Alu	12814	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
235823	chrX	49272921	49274350	+	0	NA	intron (NM_033215, intron 1 of 3)	intron (NM_033215, intron 1 of 3)	3842	NM_033215	89801		NM_033215	ENSG00000049769	PPP1R3F	HB2E|LL0XNC01-7P3.1|R3F	protein phosphatase 1 regulatory subunit 3F	protein-coding
189653	chr5	176236921	176237380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1209	NM_001308196	375484		NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1|PLEIAD	SUMO interacting motifs containing 1	protein-coding
163262	chr3	50295351	50295700	+	0	NA	TTS (NM_012191)	TTS (NM_012191)	-3096	NM_006764	7866		NM_006764	ENSG00000214706	IFRD2	IFNRP|SKMc15|SM15	interferon related developmental regulator 2	protein-coding
200856	chr6	138517371	138517880	+	0	NA	intron (NM_020464, intron 1 of 6)	MLT1N2|LTR|ERVL-MaLR	-18131	NM_001144060	57224		NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
75135	chr15	64589371	64589730	+	0	NA	intron (NM_015042, intron 2 of 9)	MIR|SINE|MIR	113731	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
181341	chr5	40409771	40411330	+	0	NA	Intergenic	Intergenic	-269365	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
192681	chr6	26249321	26250950	+	0	NA	TTS (NM_021018)	TTS (NM_021018)	500	NM_021018	8968		NM_021018	ENSG00000277775	H3C7	H3/i|H3C1|H3C10|H3C11|H3C12|H3C2|H3C3|H3C4|H3C6|H3C8|H3FI|HIST1H3F	H3 clustered histone 7	protein-coding
236402	chrX	71147601	71147830	+	0	NA	5' UTR (NM_001166660, exon 2 of 6)	5' UTR (NM_001166660, exon 2 of 6)	2874	NM_001321276	54413		NM_018977	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
198763	chr6	108661751	108662050	+	0	NA	intron (NM_201559, intron 2 of 3)	L1MC3|LINE|L1	-89754	NR_033376	387111		NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
30862	chr10	86707521	86707780	+	0	NA	intron (NM_001368066, intron 9 of 14)	intron (NM_001368066, intron 9 of 14)	39086	NM_001080116	11155		NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
77741	chr15	85743501	85743950	+	0	NA	exon (NM_001270546, exon 28 of 29)	exon (NM_001270546, exon 28 of 29)	15000	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
146901	chr20	51539071	51539230	+	0	NA	intron (NM_001258292, intron 1 of 9)	intron (NM_001258292, intron 1 of 9)	3569	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
130960	chr2	87526571	87526730	+	0	NA	Intergenic	Intergenic	56700	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
156650	chr22	41632721	41633400	+	0	NA	intron (NM_001288977, intron 3 of 12)	AluSc|SINE|Alu	11765	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
83414	chr16	27224371	27224730	+	0	NA	TTS (NM_145080)	TTS (NM_145080)	20575	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
127609	chr2	42976651	42977380	+	0	NA	Intergenic	Intergenic	62528	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
119075	chr19	39195521	39196180	+	0	NA	Intergenic	AluSz|SINE|Alu	-1114	NM_001001414	342897		NM_001001414	ENSG00000188505	NCCRP1	FBXO50|NCCRP-1	NCCRP1, F-box associated domain containing	protein-coding
168583	chr3	149018721	149018980	+	0	NA	intron (NM_001184721, intron 5 of 5)	AluJb|SINE|Alu	27310	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
6006	chr1	27012271	27013530	+	0	NA	promoter-TSS (NM_052943)	promoter-TSS (NM_052943)	-50	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
78522	chr15	92947151	92947250	+	0	NA	intron (NM_001042572, intron 12 of 12)	intron (NM_001042572, intron 12 of 12)	42801	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
91627	chr17	5409851	5410300	+	0	NA	intron (NM_002532, intron 4 of 16)	L2a|LINE|L2	-9566	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
165508	chr3	100269721	100269980	+	0	NA	intron (NM_001199198, intron 1 of 18)	Charlie11|DNA|hAT-Charlie	8858	NM_001199198	55773		NM_018309	ENSG00000036054	TBC1D23	NS4ATP1|PCH11	TBC1 domain family member 23	protein-coding
89695	chr16	89393701	89394700	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-36718	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
11367	chr1	89637321	89637750	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	4415	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
160616	chr3	31502751	31503250	+	0	NA	Intergenic	MIRc|SINE|MIR	-29925	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
21530	chr1	205812301	205814300	+	0	NA	promoter-TSS (NM_173854)	promoter-TSS (NM_173854)	-102	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
69035	chr14	91833901	91834950	+	0	NA	intron (NM_001128596, intron 1 of 11)	intron (NM_001128596, intron 1 of 11)	2030	NM_152332	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
220334	chr8	98949971	98950530	+	0	NA	intron (NM_053001, intron 2 of 3)	intron (NM_053001, intron 2 of 3)	5808	NM_001142462	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
138151	chr2	202373021	202373280	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-3177	NM_001204	659		NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding
129407	chr2	68912571	68913450	+	0	NA	Intergenic	L2a|LINE|L2	39883	NM_182536	200504		NM_182536	ENSG00000183607	GKN2	BRICD1B|GDDR|PRO813|TFIZ1|VLTI465	gastrokine 2	protein-coding
146651	chr20	50385701	50386770	+	0	NA	Intergenic	Intergenic	-64893	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
203130	chr6	166862301	166863000	+	0	NA	promoter-TSS (NM_001006932)	promoter-TSS (NM_001006932)	-125	NM_001318936	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
220001	chr8	90003251	90003350	+	0	NA	intron (NM_001359, intron 1 of 9)	intron (NM_001359, intron 1 of 9)	1823	NM_001359	1666		NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	2,4-dienoyl-CoA reductase 1	protein-coding
156900	chr22	42202771	42203450	+	0	NA	intron (NM_005650, intron 2 of 5)	intron (NM_005650, intron 2 of 5)	-58556	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
210054	chr7	95470571	95470730	+	0	NA	Intergenic	Intergenic	-15251	NM_145872	51666		NM_016116	ENSG00000005981	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
56109	chr12	110738671	110739180	+	0	NA	intron (NM_002710, intron 1 of 6)	intron (NM_002710, intron 1 of 6)	3966	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
84298	chr16	30086951	30087050	+	0	NA	intron (NM_004608, intron 6 of 8)	MIR|SINE|MIR	4924	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
127959	chr2	46616051	46617550	+	0	NA	promoter-TSS (NM_014171)	promoter-TSS (NM_014171)	241	NM_002643	5281		NM_002643	ENSG00000151665	PIGF	OORS	phosphatidylinositol glycan anchor biosynthesis class F	protein-coding
103636	chr17	78753051	78753350	+	0	NA	intron (NM_017456, intron 1 of 12)	FLAM_C|SINE|Alu	-16298	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
161513	chr3	42581581	42583400	+	0	NA	promoter-TSS (NM_001201584)	promoter-TSS (NM_001201584)	-523	NM_004206	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
128066	chr2	47859901	47860800	+	0	NA	intron (NM_001190274, intron 1 of 22)	intron (NM_001190274, intron 1 of 22)	28369	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
154374	chr22	33920671	33921650	+	0	NA	promoter-TSS (NM_004737)	promoter-TSS (NM_004737)	-684	NM_004737	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
89660	chr16	89359671	89360100	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	39433	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
170386	chr3	184796551	184797050	+	0	NA	Intergenic	Intergenic	-15343	NM_001349297	23355		NM_015303	ENSG00000156931	VPS8	KIAA0804	VPS8 subunit of CORVET complex	protein-coding
42184	chr11	67964871	67965130	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	39097	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
159554	chr3	14781051	14781150	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	30314	NR_135245	152274		NR_135245	ENSG00000260902	LINC02011	-	long intergenic non-protein coding RNA 2011	ncRNA
77978	chr15	89408571	89408730	+	0	NA	intron (NR_160724, intron 1 of 2)	intron (NR_160724, intron 1 of 2)	8479	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
58383	chr12	131831151	131831780	+	0	NA	intron (NM_016155, intron 1 of 9)	intron (NM_016155, intron 1 of 9)	3072	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
143522	chr20	31548701	31549500	+	0	NA	exon (NM_030789, exon 5 of 12)	exon (NM_030789, exon 5 of 12)	24163	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
110257	chr19	1794551	1794850	+	0	NA	intron (NR_047593, intron 18 of 28)	L2c|LINE|L2	17576	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
6496	chr1	28503351	28503850	+	0	NA	Intergenic	AluJb|SINE|Alu	-2343	NR_002909	8420		NR_002909	ENSG00000242125	SNHG3	NCRNA00014|RNU17C|RNU17D|U17HG|U17HG-A|U17HG-AB	small nucleolar RNA host gene 3	ncRNA
226799	chr9	77023001	77023200	+	0	NA	Intergenic	CpG	3445	NM_001013735	442425		NM_001013735	ENSG00000204612	FOXB2	FKH4|bA159H20.4	forkhead box B2	protein-coding
198664	chr6	107843301	107843700	+	0	NA	Intergenic	Intergenic	-19187	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
11678	chr1	91829421	91829680	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	56601	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
116428	chr19	18017151	18017250	+	0	NA	Intergenic	Intergenic	9030	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
76549	chr15	75205951	75206930	+	0	NA	exon (NM_015492, exon 2 of 3)	exon (NM_015492, exon 2 of 3)	4558	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
92130	chr17	7621101	7621650	+	0	NA	intron (NM_001289114, intron 1 of 7)	AluSx|SINE|Alu	6446	NM_133491	112483		NM_133491	ENSG00000141504	SAT2	SSAT-2|SSAT2	spermidine/spermine N1-acetyltransferase family member 2	protein-coding
227052	chr9	83975451	83975950	+	0	NA	intron (NM_031263, intron 5 of 16)	intron (NM_031263, intron 5 of 16)	4515	NM_031263	3190		NM_002140	ENSG00000165119	HNRNPK	AUKS|CSBP|HNRPK|TUNP	heterogeneous nuclear ribonucleoprotein K	protein-coding
220280	chr8	97822071	97822230	+	0	NA	intron (NM_018407, intron 5 of 6)	intron (NM_018407, intron 5 of 6)	46362	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
1543	chr1	3455671	3455830	+	0	NA	intron (NM_014448, intron 1 of 14)	intron (NM_014448, intron 1 of 14)	1085	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
60689	chr13	43841371	43841530	+	0	NA	intron (NM_144974, intron 6 of 6)	L1MEc|LINE|L1	-37728	NM_001128303	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
176222	chr4	84580921	84581180	+	0	NA	Intergenic	Intergenic	-2077	NM_001263	1040		NM_001263	ENSG00000163624	CDS1	CDS 1	CDP-diacylglycerol synthase 1	protein-coding
209792	chr7	87626121	87626830	+	0	NA	intron (NM_001348945, intron 2 of 31)	intron (NM_001348945, intron 2 of 31)	-1923	NM_138290	154661		NM_138290	ENSG00000105784	RUNDC3B	RPIB9|RPIP9	RUN domain containing 3B	protein-coding
217332	chr8	27547551	27548330	+	0	NA	Intergenic	Intergenic	56797	NM_001256482	2053		NM_001979	ENSG00000120915	EPHX2	ABHD20|CEH|SEH	epoxide hydrolase 2	protein-coding
124535	chr2	263891	265430	+	0	NA	promoter-TSS (NM_001159597)	promoter-TSS (NM_001159597)	83	NR_104223	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
29724	chr10	72083641	72084580	+	0	NA	intron (NM_014767, intron 2 of 11)	intron (NM_014767, intron 2 of 11)	4441	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
78726	chr15	98657601	98657800	+	0	NA	intron (NM_000875, intron 1 of 20)	intron (NM_000875, intron 1 of 20)	-6479	NR_126453	104472848		NR_126453		IRAIN	IGF1R-AS|IGF1RAS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
212491	chr7	128557121	128557580	+	0	NA	Intergenic	AluSz6|SINE|Alu	80602	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
100016	chr17	57949721	57949980	+	0	NA	intron (NM_001271875, intron 1 of 10)	AluJb|SINE|Alu	5562	NM_001271875	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
54710	chr12	93444401	93444800	+	0	NA	Intergenic	AluSz|SINE|Alu	-2653	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
74180	chr15	55435271	55435500	+	0	NA	intron (NM_001033560, intron 7 of 8)	MLT1K|LTR|ERVL-MaLR	-26875	NM_001204450	9236		NM_004748	ENSG00000260916	CCPG1	CPR8	cell cycle progression 1	protein-coding
111609	chr19	4106901	4107100	+	0	NA	intron (NM_030662, intron 3 of 10)	intron (NM_030662, intron 3 of 10)	17122	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
87412	chr16	70660351	70661050	+	0	NA	TTS (NM_001172772)	TTS (NM_001172772)	25353	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
114089	chr19	11110171	11110730	+	0	NA	intron (NM_001195800, intron 4 of 15)	AluSq2|SINE|Alu	-3024	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
75703	chr15	68053701	68055000	+	0	NA	promoter-TSS (NM_016166)	promoter-TSS (NM_016166)	35	NM_016166	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
22409	chr1	220037271	220037430	+	0	NA	intron (NM_004446, intron 2 of 31)	AluSx|SINE|Alu	9155	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
93643	chr17	19180671	19180830	+	0	NA	Intergenic	Intergenic	-7266	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
181437	chr5	40833871	40834700	+	0	NA	intron (NM_000997, intron 2 of 3)	intron (NM_000997, intron 2 of 3)	937	NR_159993	6167		NM_000997	ENSG00000145592	RPL37	L37|eL37	ribosomal protein L37	protein-coding
19740	chr1	181158671	181158830	+	0	NA	Intergenic	MIR|SINE|MIR	-15734	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
210830	chr7	100949401	100949800	+	0	NA	promoter-TSS (NM_005960)	promoter-TSS (NM_005960)	66	NM_005960	4584		NM_005960	ENSG00000169894	MUC3A	MUC-3A|MUC3	mucin 3A, cell surface associated	protein-coding
50169	chr12	45980971	45981380	+	0	NA	intron (NM_004719, intron 1 of 14)	intron (NM_004719, intron 1 of 14)	9399	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
70332	chr14	101842301	101842680	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	32627	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
163036	chr3	49840921	49841330	+	0	NA	intron (NM_005879, intron 7 of 14)	intron (NM_005879, intron 7 of 14)	15439	NM_005879	10293		NM_005879	ENSG00000183763	TRAIP	RNF206|SCKL9|TRIP	TRAF interacting protein	protein-coding
111959	chr19	4819321	4819580	+	0	NA	intron (NM_001385680, intron 1 of 2)	MIR|SINE|MIR	12262	NM_001385680	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
129044	chr2	65055351	65057000	+	0	NA	promoter-TSS (NM_001319101)	promoter-TSS (NM_001319101)	-241	NM_001319101	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
106194	chr18	11149551	11149650	+	0	NA	promoter-TSS (NM_022068)	promoter-TSS (NM_022068)	-31	NM_022068	63895		NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS	piezo type mechanosensitive ion channel component 2	protein-coding
36802	chr11	9577301	9578800	+	0	NA	intron (NM_001143976, intron 5 of 10)	U13_|snRNA|snRNA	3363	NM_001143976	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
204661	chr7	5450351	5451250	+	0	NA	Intergenic	Intergenic	-21873	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
52032	chr12	54001601	54002280	+	0	NA	intron (NM_006897, intron 1 of 1)	intron (NM_006897, intron 1 of 1)	1779	NM_006897	3225		NM_006897	ENSG00000180806	HOXC9	HOX3|HOX3B	homeobox C9	protein-coding
99524	chr17	50345351	50347280	+	0	NA	intron (NM_022167, intron 1 of 10)	CpG	189	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
207103	chr7	40232651	40232750	+	0	NA	intron (NM_001193311, intron 6 of 14)	intron (NM_001193311, intron 6 of 14)	97695	NM_001193311	79783		NM_024728	ENSG00000175600	SUGCT	C7orf10|DERP13|GA3|ORF19	succinyl-CoA:glutarate-CoA transferase	protein-coding
199990	chr6	128031951	128032900	+	0	NA	intron (NR_125849, intron 1 of 4)	intron (NR_125849, intron 1 of 4)	4560	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
6600	chr1	28777601	28777950	+	0	NA	Intergenic	Intergenic	-34395	NM_000911	4985		NM_000911	ENSG00000116329	OPRD1	DOP|DOR|DOR1|OPRD	opioid receptor delta 1	protein-coding
234504	chrX	19345171	19345700	+	0	NA	intron (NM_001173456, intron 1 of 9)	AluSq2|SINE|Alu	1508	NM_001173454	5160		NM_000284	ENSG00000131828	PDHA1	E1alpha|PDHA|PDHAD|PDHCE1A|PHE1A	pyruvate dehydrogenase E1 subunit alpha 1	protein-coding
212760	chr7	129943151	129943650	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	9560	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
85969	chr16	57300201	57301550	+	0	NA	Intergenic	Intergenic	-16203	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
81961	chr16	11859401	11859600	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7958	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
229247	chr9	115036021	115036380	+	0	NA	exon (NM_002160, exon 21 of 28)	exon (NM_002160, exon 21 of 28)	81957	NM_002160	3371		NM_002160	ENSG00000041982	TNC	150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C	tenascin C	protein-coding
190578	chr5	180960221	180960480	+	0	NA	Intergenic	L1PBa|LINE|L1	-28496	NM_197975	10917		NM_006707	ENSG00000168903	BTNL3	BTN9.1|BTNLR	butyrophilin like 3	protein-coding
149016	chr21	14542871	14543300	+	0	NA	intron (NM_001286523, intron 1 of 8)	intron (NM_001286523, intron 1 of 8)	3230	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
214213	chr7	148719771	148719930	+	0	NA	intron (NM_001370664, intron 1 of 21)	intron (NM_001370664, intron 1 of 21)	20140	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
199646	chr6	122376421	122376880	+	0	NA	Intergenic	HAL1|LINE|L1	-22901	NM_001135564	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
195432	chr6	36958801	36959000	+	0	NA	intron (NM_153370, intron 1 of 6)	intron (NM_153370, intron 1 of 6)	4162	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
173117	chr4	6561851	6562150	+	0	NA	intron (NM_001206994, intron 1 of 9)	intron (NM_001206994, intron 1 of 9)	1799	NM_001206994	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
143726	chr20	32319851	32320230	+	0	NA	intron (NM_004798, intron 5 of 8)	AluSx|SINE|Alu	-38291	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
118707	chr19	38217121	38217580	+	0	NA	intron (NM_004647, intron 6 of 10)	intron (NM_004647, intron 6 of 10)	6872	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
41784	chr11	66849921	66850250	+	0	NA	exon (NM_000920, exon 19 of 22)	exon (NM_000920, exon 19 of 22)	6644	NM_001032279	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
176179	chr4	83334151	83335630	+	0	NA	promoter-TSS (NM_001098540)	promoter-TSS (NM_001098540)	-42	NM_001098540	10855		NM_006665	ENSG00000173083	HPSE	HPA|HPA1|HPR1|HPSE1|HSE1	heparanase	protein-coding
214982	chr7	152129021	152129330	+	0	NA	Intergenic	CpG	54138	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
156365	chr22	41023671	41023830	+	0	NA	Intergenic	AluSx3|SINE|Alu	49971	NR_132979	106635682		NR_132979		SNORD140	-	small nucleolar RNA, C/D box 140	snoRNA
206944	chr7	38242871	38243730	+	0	NA	Intergenic	Intergenic	30347	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
204805	chr7	5656221	5656650	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	24026	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
98933	chr17	48625701	48626200	+	0	NA	exon (NM_024017, exon 1 of 2)	exon (NM_024017, exon 1 of 2)	408	NM_024017	3219		NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
229323	chr9	120894101	120894500	+	0	NA	intron (NM_001286840, intron 1 of 14)	intron (NM_001286840, intron 1 of 14)	596	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
130305	chr2	84926701	84927600	+	0	NA	Intergenic	Intergenic	21494	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
181896	chr5	54534401	54534600	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	16741	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
218135	chr8	41612601	41613000	+	0	NA	intron (NM_178819, intron 7 of 12)	intron (NM_178819, intron 7 of 12)	34284	NM_001363197	137964		NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
34873	chr11	359171	360180	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-9824	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
212517	chr7	128788921	128789530	+	0	NA	Intergenic	Intergenic	-2213	NM_001367762	64753		NM_022742	ENSG00000128596	CCDC136	NAG6	coiled-coil domain containing 136	protein-coding
221332	chr8	123112501	123113100	+	0	NA	intron (NM_001363156, intron 9 of 19)	intron (NM_001363156, intron 9 of 19)	39551	NM_001363149	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
136242	chr2	174608301	174609580	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-10709	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
91730	chr17	6654601	6655400	+	0	NA	promoter-TSS (NR_039874)	promoter-TSS (NR_039874)	-449	NR_039874	100616466		NR_039874	ENSG00000283301	MIR4520-2	MIR4520B|hsa-mir-4520-2|mir-4520-2	microRNA 4520-2	ncRNA
211052	chr7	102459101	102459580	+	0	NA	intron (NM_017621, intron 2 of 2)	intron (NM_017621, intron 2 of 2)	5523	NM_017621	54784		NM_017621	ENSG00000160993	ALKBH4	ABH4	alkB homolog 4, lysine demethylase	protein-coding
201260	chr6	144149721	144151000	+	0	NA	promoter-TSS (NM_003764)	promoter-TSS (NM_003764)	-157	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
132003	chr2	100589671	100590030	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-13889	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
209596	chr7	77546701	77547300	+	0	NA	intron (NM_001131008, intron 1 of 17)	intron (NM_001131008, intron 1 of 17)	8957	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
18358	chr1	161258401	161259530	+	0	NA	5' UTR (NM_001102566, exon 1 of 3)	5' UTR (NM_001102566, exon 1 of 3)	220	NM_001102566	654790		NM_001102566	ENSG00000248485	PCP4L1	IQM1	Purkinje cell protein 4 like 1	protein-coding
234165	chrX	11724251	11724630	+	0	NA	Intergenic	Intergenic	-33719	NM_001282174	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
229029	chr9	114290821	114291400	+	0	NA	intron (NM_032888, intron 48 of 60)	intron (NM_032888, intron 48 of 60)	-31988	NM_000607	5004		NM_000607	ENSG00000229314	ORM1	A1AG1|AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
69258	chr14	93033851	93034950	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	2574	NM_001363707	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
33441	chr10	119027101	119028080	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2124	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
169123	chr3	155853451	155855800	+	0	NA	promoter-TSS (NM_001363883)	promoter-TSS (NM_001363883)	-166	NM_001190992	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
7578	chr1	35175501	35176100	+	0	NA	TTS (NR_136703)	TTS (NR_136703)	17345	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
5511	chr1	25774471	25775720	+	0	NA	intron (NM_001385185, intron 7 of 10)	intron (NM_001385185, intron 7 of 10)	-25098	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
67325	chr14	69628871	69629430	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	17554	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
67473	chr14	70894851	70895230	+	0	NA	Intergenic	L2c|LINE|L2	-12419	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
15378	chr1	150155121	150155580	+	0	NA	intron (NM_016274, intron 2 of 5)	intron (NM_016274, intron 2 of 5)	4764	NM_001304723	51177		NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding
223719	chr8	144459671	144460550	+	0	NA	intron (NM_138496, intron 2 of 4)	intron (NM_138496, intron 2 of 4)	2429	NR_162109	113218512		NR_162109		MIR10400	-	microRNA 10400	ncRNA
111731	chr19	4352301	4353380	+	0	NA	intron (NM_032868, intron 3 of 11)	intron (NM_032868, intron 3 of 11)	9278	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
127812	chr2	44801451	44801750	+	0	NA	Intergenic	Intergenic	137288	NR_147194	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
153428	chr22	25060551	25061400	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	33001	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
83889	chr16	28961901	28962100	+	0	NA	intron (NM_032815, intron 7 of 7)	AluJo|SINE|Alu	3417	NR_039742	100616487		NR_039742	ENSG00000284541	MIR4517	mir-4517	microRNA 4517	ncRNA
226777	chr9	76571321	76571940	+	0	NA	Intergenic	Intergenic	70997	NM_001097636	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
66276	chr14	61376101	61376700	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	54957	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
8091	chr1	39080971	39082100	+	0	NA	Intergenic	CpG	-2632	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
170628	chr3	187024471	187024630	+	0	NA	intron (NM_003032, intron 1 of 6)	intron (NM_003032, intron 1 of 6)	2695	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
202307	chr6	157253771	157254330	+	0	NA	Intergenic	L1MB8|LINE|L1	69469	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
168055	chr3	136942621	136943100	+	0	NA	intron (NM_001190796, intron 1 of 2)	L1MB5|LINE|L1	12358	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
164915	chr3	71144351	71144650	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	-12303	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
132309	chr2	105301601	105301930	+	0	NA	intron (NM_001328646, intron 2 of 11)	FAM|SINE|Alu	27891	NR_137328	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
60381	chr13	40941721	40941980	+	0	NA	intron (NM_001370329, intron 8 of 9)	AluJo|SINE|Alu	-20076	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
206022	chr7	26376601	26377580	+	0	NA	promoter-TSS (NR_136271)	promoter-TSS (NR_136271)	-389	NR_136270	105375304		NR_136270	ENSG00000225792	SNX10-AS1	-	SNX10 antisense RNA 1	ncRNA
64655	chr14	31458451	31458750	+	0	NA	Intergenic	Intergenic	-1094	NM_080664	112487		NM_080664	ENSG00000129480	DTD2	ATD|C14orf126	D-aminoacyl-tRNA deacylase 2	protein-coding
181868	chr5	54243501	54243730	+	0	NA	intron (NM_019087, intron 1 of 4)	intron (NM_019087, intron 1 of 4)	66958	NM_019087	54622		NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
80497	chr16	2715421	2716980	+	0	NA	intron (NM_031948, intron 2 of 5)	intron (NM_031948, intron 2 of 5)	4024	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
46429	chr11	128021971	128022330	+	0	NA	Intergenic	Intergenic	-186616	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
147208	chr20	57380421	57380900	+	0	NA	Intergenic	Intergenic	-10736	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
18196	chr1	160858251	160858950	+	0	NA	intron (NM_001166664, intron 1 of 7)	intron (NM_001166664, intron 1 of 7)	4287	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
209568	chr7	77355471	77355830	+	0	NA	intron (NR_146937, intron 14 of 31)	intron (NR_146937, intron 14 of 31)	-59548	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
66083	chr14	59189801	59190630	+	0	NA	intron (NM_001270520, intron 1 of 24)	intron (NM_001270520, intron 1 of 24)	1548	NM_001270520	23002		NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
90751	chr17	2041271	2043000	+	0	NA	exon (NM_080822, exon 1 of 2)	exon (NM_080822, exon 1 of 2)	113	NM_080822	124641		NM_080822	ENSG00000262664	OVCA2	-	OVCA2 serine hydrolase domain containing	protein-coding
161132	chr3	38495951	38497050	+	0	NA	exon (NM_005107, exon 1 of 6)	exon (NM_005107, exon 1 of 6)	160	NM_005107	9941		NM_005107	ENSG00000157036	EXOG	ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB	exo/endonuclease G	protein-coding
76287	chr15	74134101	74135130	+	0	NA	exon (NM_020851, exon 3 of 3)	exon (NM_020851, exon 3 of 3)	4029	NM_020851	57611		NM_020851	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine rich repeat 2	protein-coding
139772	chr2	230216551	230217200	+	0	NA	exon (NM_004510, exon 2 of 15)	exon (NM_004510, exon 2 of 15)	3109	NM_001378443	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
92844	chr17	16218371	16218530	+	0	NA	intron (NM_004278, intron 1 of 6)	intron (NM_004278, intron 1 of 6)	1240	NM_004278	9487		NM_004278	ENSG00000108474	PIGL	CHIME	phosphatidylinositol glycan anchor biosynthesis class L	protein-coding
108360	chr18	67515071	67515230	+	0	NA	5' UTR (NM_032160, exon 2 of 2)	5' UTR (NM_032160, exon 2 of 2)	-1396	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
110814	chr19	2477801	2480410	+	0	NA	TTS (NM_015675)	TTS (NM_015675)	2978	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
150894	chr21	44144881	44146530	+	0	NA	TTS (NM_004649).2	TTS (NM_004649).2	12022	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
157088	chr22	42622571	42623000	+	0	NA	intron (NM_001129819, intron 8 of 8)	intron (NM_001129819, intron 8 of 8)	7540	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
129922	chr2	73295451	73295550	+	0	NA	Intergenic	Intergenic	-1952	NM_001965	1961		NM_001965	ENSG00000135625	EGR4	AT133|NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
113650	chr19	10360701	10360900	+	0	NA	intron (NM_001385207, intron 14 of 24)	AluJr|SINE|Alu	19772	NM_001385207	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
114383	chr19	12549521	12549930	+	0	NA	intron (NM_144976, intron 1 of 3)	intron (NM_144976, intron 1 of 3)	1757	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
102231	chr17	75239971	75240130	+	0	NA	exon (NM_001172704, exon 12 of 16)	exon (NM_001172704, exon 12 of 16)	21556	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
128232	chr2	54330321	54331280	+	0	NA	promoter-TSS (NM_001100396)	promoter-TSS (NM_001100396)	-84	NM_001369401	129852		NM_173486	ENSG00000177994	C2orf73	-	chromosome 2 open reading frame 73	protein-coding
39998	chr11	62636771	62636930	+	0	NA	intron (NM_001278193, intron 1 of 20)	AluSx4|SINE|Alu	3368	NM_001329224	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
213156	chr7	131552601	131553000	+	0	NA	intron (NM_005397, intron 1 of 7)	AluJb|SINE|Alu	3828	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
95327	chr17	35741021	35741950	+	0	NA	3' UTR (NM_033315, exon 4 of 4)	3' UTR (NM_033315, exon 4 of 4)	9846	NM_033315	91608		NM_033315	ENSG00000270885	RASL10B	RRP17|VTS58635	RAS like family 10 member B	protein-coding
188401	chr5	153964751	153965280	+	0	NA	Intergenic	Intergenic	-66028	NR_146729	105378238		NR_146729	ENSG00000251183	LINC01861	-	long intergenic non-protein coding RNA 1861	ncRNA
142434	chr20	3925501	3925950	+	0	NA	non-coding (NR_136715, exon 7 of 7)	non-coding (NR_136715, exon 7 of 7)	-8162	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
15667	chr1	150924171	150924530	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1913	NM_001366417	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
8401	chr1	40398771	40399480	+	0	NA	intron (NM_001198980, intron 1 of 9)	intron (NM_001198980, intron 1 of 9)	2325	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
121933	chr19	48454351	48454830	+	0	NA	promoter-TSS (NM_013348)	promoter-TSS (NM_013348)	-984	NM_013348	3770		NM_013348	ENSG00000182324	KCNJ14	IRK4|KIR2.4	potassium inwardly rectifying channel subfamily J member 14	protein-coding
193286	chr6	30060451	30062300	+	0	NA	promoter-TSS (NR_026751)	promoter-TSS (NR_026751)	110	NR_103864	30834		NM_014596	ENSG00000066379	POLR1H	A12.2|HTEX-6|HTEX6|Rpa12|TCTEX6|TEX6|ZNRD1|ZR14|hZR14|tctex-6	RNA polymerase I subunit H	protein-coding
223687	chr8	144416651	144417100	+	0	NA	promoter-TSS (NM_017767)	promoter-TSS (NM_017767)	-31	NM_130849	55630		NM_017767	ENSG00000147804	SLC39A4	AEZ|AWMS2|ZIP4	solute carrier family 39 member 4	protein-coding
172556	chr4	2408621	2409180	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	9745	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
237863	chrX	130183371	130184000	+	0	NA	intron (NM_004794, intron 1 of 1)	L1ME4a|LINE|L1	11723	NM_004794	9363		NM_004794	ENSG00000134594	RAB33A	RabS10	RAB33A, member RAS oncogene family	protein-coding
183849	chr5	87074171	87074330	+	0	NA	Intergenic	Intergenic	40704	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
48442	chr12	9703471	9703630	+	0	NA	Intergenic	AluJb|SINE|Alu	29749	NM_001267701	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
113900	chr19	10687401	10687600	+	0	NA	exon (NM_017620, exon 18 of 20)	exon (NM_017620, exon 18 of 20)	-13939	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
236927	chrX	96764951	96765050	+	0	NA	intron (NM_007309, intron 4 of 26)	L2c|LINE|L2	80158	NM_006729	1730		NM_006729	ENSG00000147202	DIAPH2	DIA|DIA2|DRF2|POF|POF2|POF2A	diaphanous related formin 2	protein-coding
106929	chr18	26228801	26229200	+	0	NA	intron (NM_001293725, intron 1 of 14)	MIRb|SINE|MIR	2555	NM_005640	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
202665	chr6	158782501	158782750	+	0	NA	intron (NM_003379, intron 6 of 12)	intron (NM_003379, intron 6 of 12)	-17872	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
231636	chr9	131594271	131594430	+	0	NA	intron (NM_001377935, intron 17 of 26)	MIRb|SINE|MIR	48827	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
91828	chr17	7179771	7179930	+	0	NA	promoter-TSS (NM_001197216)	promoter-TSS (NM_001197216)	-286	NM_001197216	432		NM_001671	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
24793	chr1	248943801	248944980	+	0	NA	Intergenic	TAR1|Satellite|telo	38147	NM_001017434	267002		NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
166573	chr3	116208771	116209030	+	0	NA	intron (NM_001318915, intron 1 of 8)	L1PA2|LINE|L1	-151124	NR_109998	101926903		NR_109998	ENSG00000240922	LSAMP-AS1	-	LSAMP antisense RNA 1	ncRNA
197477	chr6	75551571	75552280	+	0	NA	Intergenic	L1MD|LINE|L1	-49584	NM_001304792	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
131130	chr2	91476701	91477300	+	0	NA	Intergenic	Intergenic	182949	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
145009	chr20	37692371	37692730	+	0	NA	Intergenic	AluSz|SINE|Alu	-1405	NM_001281495	56259		NM_030877	ENSG00000132792	CTNNBL1	C20orf33|IMD99|NAP|P14L|PP8304|dJ633O20.1	catenin beta like 1	protein-coding
169770	chr3	172623171	172623900	+	0	NA	Intergenic	Intergenic	-27928	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
26382	chr10	16835221	16835580	+	0	NA	intron (NM_001081, intron 63 of 66)	intron (NM_001081, intron 63 of 66)	-17946	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
88589	chr16	85579401	85579600	+	0	NA	Intergenic	Intergenic	-31909	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
74833	chr15	63500171	63500680	+	0	NA	Intergenic	Intergenic	-4086	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
230533	chr9	128368451	128368750	+	0	NA	intron (NR_031672, intron 2 of 2).4	intron (NR_031672, intron 2 of 2).4	-2719	NM_001135947	81605		NM_030914	ENSG00000167118	URM1	C9orf74	ubiquitin related modifier 1	protein-coding
69941	chr14	99609421	99609780	+	0	NA	intron (NM_001329411, intron 1 of 8)	MIR3|SINE|MIR	5062	NM_001329411	84439		NM_032425	ENSG00000182218	HHIPL1	KIAA1822|UNQ9245	HHIP like 1	protein-coding
176146	chr4	83163571	83163730	+	0	NA	Intergenic	AluY|SINE|Alu	-48921	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
163584	chr3	51962701	51962900	+	0	NA	promoter-TSS (NM_033010)	promoter-TSS (NM_033010)	92	NM_033010	57060		NM_020418	ENSG00000090097	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding
91121	chr17	3688301	3688500	+	0	NA	intron (NM_002561, intron 8 of 11)	intron (NM_002561, intron 8 of 11)	7755	NM_001204519	5026		NM_002561	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X 5	protein-coding
214495	chr7	150446001	150446200	+	0	NA	intron (NR_034033, intron 2 of 3)	AluSz|SINE|Alu	-4530	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
95129	chr17	35022651	35024000	+	0	NA	intron (NM_001017368, intron 2 of 6)	intron (NM_001017368, intron 2 of 6)	40382	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
82341	chr16	15951601	15951980	+	0	NA	intron (NM_004996, intron 1 of 30)	AluJb|SINE|Alu	2174	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
26518	chr10	21372901	21373250	+	0	NA	promoter-TSS (NR_155751)	promoter-TSS (NR_155751)	-125	NR_155751	105376444		NR_155751	ENSG00000230109	LINC02643	-	long intergenic non-protein coding RNA 2643	ncRNA
215093	chr7	155198601	155199180	+	0	NA	Intergenic	Intergenic	-98882	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
35416	chr11	1403751	1404250	+	0	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	-6470	NM_001282218	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
199679	chr6	122484951	122485050	+	0	NA	intron (NM_001270393, intron 3 of 7)	MER57A1|LTR|ERV1	13083	NM_181794	5570		NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
34001	chr10	124686621	124686880	+	0	NA	intron (NM_014661, intron 3 of 4)	intron (NM_014661, intron 3 of 4)	-17278	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
177756	chr4	122639101	122639300	+	0	NA	intron (NR_104126, intron 7 of 10)	intron (NR_104126, intron 7 of 10)	-18134	NM_021803	59067		NM_021803	ENSG00000138684	IL21	CVID11|IL-21|Za11	interleukin 21	protein-coding
75226	chr15	64856151	64856550	+	0	NA	intron (NM_001195059, intron 2 of 4)	intron (NM_001195059, intron 2 of 4)	14435	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
78203	chr15	90583671	90584430	+	0	NA	intron (NM_001042574, intron 2 of 14)	L4_C_Mam|LINE|RTE-X	54127	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
39064	chr11	47976151	47976650	+	0	NA	Intergenic	AluSg|SINE|Alu	-4159	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
193764	chr6	31348401	31349300	+	0	NA	Intergenic	MER21C|LTR|ERVL	6466	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
68007	chr14	75061801	75062500	+	0	NA	intron (NR_126393, intron 2 of 3)	AluJb|SINE|Alu	1874	NM_001302616	97		NM_001107	ENSG00000119640	ACYP1	ACYPE	acylphosphatase 1	protein-coding
43915	chr11	90204751	90205800	+	0	NA	intron (NM_001144073, intron 7 of 9)	intron (NM_001144073, intron 7 of 9)	17774	NM_012124	26973		NM_012124	ENSG00000110172	CHORDC1	CHP1	cysteine and histidine rich domain containing 1	protein-coding
63498	chr13	114219251	114220130	+	0	NA	Intergenic	Intergenic	-15155	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
66756	chr14	64518601	64519130	+	0	NA	intron (NR_110550, intron 2 of 3)	intron (NR_110550, intron 2 of 3)	-13652	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
94469	chr17	29265021	29265400	+	0	NA	intron (NM_020772, intron 3 of 3)	intron (NM_020772, intron 3 of 3)	18351	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
11877	chr1	93145971	93146130	+	0	NA	Intergenic	AluJb|SINE|Alu	34363	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
108736	chr18	77099401	77100300	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	32933	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
135401	chr2	160703971	160704330	+	0	NA	Intergenic	Intergenic	-210343	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
17459	chr1	156703151	156703500	+	0	NA	intron (NM_001878, intron 1 of 3)	intron (NM_001878, intron 1 of 3)	2258	NM_001878	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
69778	chr14	99178151	99179430	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	93407	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
96386	chr17	40119701	40120650	+	0	NA	Intergenic	AluJb|SINE|Alu	-1796	NM_001012241	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
193663	chr6	30915421	30915930	+	0	NA	intron (NM_001167734, intron 4 of 29).3	intron (NM_001167734, intron 4 of 29).3	1344	NM_001167734	57176		NM_020442	ENSG00000137411	VARS2	COXPD20|VALRS|VARS2L|VARSL	valyl-tRNA synthetase 2, mitochondrial	protein-coding
30372	chr10	78031601	78031800	+	0	NA	Intergenic	MIR|SINE|MIR	-2060	NM_001142284	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
64214	chr14	23059801	23060480	+	0	NA	intron (NM_014977, intron 18 of 18)	AluSx1|SINE|Alu	2480	NR_169511	105370705		NR_169511	ENSG00000288795	LOC105370705	-	collagen alpha-2(I) chain-like	ncRNA
22521	chr1	221828571	221828730	+	0	NA	intron (NR_125989, intron 3 of 3)	MER4CL34|LTR|ERV1	12016	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
63105	chr13	113300721	113301180	+	0	NA	intron (NM_005561, intron 1 of 8)	intron (NM_005561, intron 1 of 8)	3711	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
90271	chr17	983301	983500	+	0	NA	Intergenic	AluYf1|SINE|Alu	-3624	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
155289	chr22	38108401	38109180	+	0	NA	intron (NM_025045, intron 2 of 13)	intron (NM_025045, intron 2 of 13)	1894	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
53953	chr12	71865951	71866330	+	0	NA	intron (NM_001146214, intron 2 of 17)	L1MA5|LINE|L1	-15157	NR_024072	729633		NR_024072		MRS2P2	-	MRS2 pseudogene 2	pseudo
124427	chr19	58469271	58470550	+	0	NA	intron (NM_014347, intron 3 of 3)	intron (NM_014347, intron 3 of 3)	2830	NM_014347	25799		NM_014347	ENSG00000083812	ZNF324	ZF5128|ZNF324A	zinc finger protein 324	protein-coding
202801	chr6	159134371	159135030	+	0	NA	Intergenic	Intergenic	-34700	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
228802	chr9	111898231	111898730	+	0	NA	intron (NM_003358, intron 1 of 8)	intron (NM_003358, intron 1 of 8)	1666	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
30901	chr10	87044651	87044950	+	0	NA	Intergenic	L1M4|LINE|L1	24506	NM_001146157	643161		NM_001146157	ENSG00000188100	FAM25A	bA96C23.5	family with sequence similarity 25 member A	protein-coding
22670	chr1	223813071	223813430	+	0	NA	intron (NM_001031685, intron 3 of 17)	L2c|LINE|L2	32697	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
184923	chr5	112927201	112927600	+	0	NA	Intergenic	AluJb|SINE|Alu	-5173	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
58344	chr12	131564071	131564230	+	0	NA	Intergenic	MIR|SINE|MIR	83971	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
43727	chr11	86052601	86053500	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	16034	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
77824	chr15	88631651	88631950	+	0	NA	3' UTR (NM_022767, exon 4 of 4)	3' UTR (NM_022767, exon 4 of 4)	-3832	NR_130134	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
162911	chr3	49409501	49409800	+	0	NA	intron (NM_001313941, intron 1 of 5)	intron (NM_001313941, intron 1 of 5)	2326	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
42143	chr11	67650271	67651150	+	0	NA	promoter-TSS (NM_080658)	promoter-TSS (NM_080658)	20	NM_080658	91703		NM_080658	ENSG00000132744	ACY3	ACY-3|HCBP1	aminoacylase 3	protein-coding
95097	chr17	34578971	34579630	+	0	NA	promoter-TSS (NM_001304438)	promoter-TSS (NM_001304438)	69	NR_160787	400591		NM_207454	ENSG00000197322	TMEM132E-DT	C17orf102	TMEM132E divergent transcript	ncRNA
50678	chr12	48855471	48856300	+	0	NA	Intergenic	MIRb|SINE|MIR	-3722	NM_004818	9416		NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
183876	chr5	87275951	87276250	+	0	NA	intron (NM_022650, intron 1 of 24)	intron (NM_022650, intron 1 of 24)	7163	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
27686	chr10	33123671	33124230	+	0	NA	Intergenic	Intergenic	-7143	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
47709	chr12	6447751	6447900	+	0	NA	intron (NR_015382, intron 3 of 5)	L1PA5|LINE|L1	2870	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
3124	chr1	12407401	12407700	+	0	NA	intron (NM_018156, intron 62 of 68)	intron (NM_018156, intron 62 of 68)	-99696	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
212336	chr7	127413701	127414850	+	0	NA	Intergenic	Intergenic	-21567	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
189115	chr5	170394071	170394230	+	0	NA	intron (NR_109899, intron 1 of 2)	intron (NR_109899, intron 1 of 2)	4657	NR_109899	101928033		NR_109899	ENSG00000253647	KCNIP1-OT1	CTD-2270F17.1	KCNIP1 overlapping transcript 1	ncRNA
190986	chr6	3023151	3024530	+	0	NA	promoter-TSS (NR_033884)	promoter-TSS (NR_033884)	50	NR_033884	401233		NM_001013680		HTATSF1P2	-	HIV-1 Tat specific factor 1 pseudogene 2	pseudo
232161	chr9	134117851	134118150	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-17199	NM_001384414	11091		NM_017588	ENSG00000196363	WDR5	BIG-3|BIG3|CFAP89|SWD3	WD repeat domain 5	protein-coding
86204	chr16	57999201	58000900	+	0	NA	5' UTR (NM_020807, exon 1 of 2)	5' UTR (NM_020807, exon 1 of 2)	447	NM_001330568	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
20237	chr1	193368101	193368700	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	63655	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
110200	chr19	1723251	1723550	+	0	NA	Intergenic	AluSx|SINE|Alu	-30106	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
7828	chr1	36306251	36308100	+	0	NA	promoter-TSS (NM_024676)	promoter-TSS (NM_024676)	68	NM_024676	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
116872	chr19	18653301	18653500	+	0	NA	intron (NM_001345983, intron 1 of 2)	(CACC)n|Simple_repeat|Simple_repeat	8762	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
233458	chr9	137658871	137659030	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	39945	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
217717	chr8	30188401	30188680	+	0	NA	Intergenic	Intergenic	32171	NM_006571	10671		NM_006571	ENSG00000104671	DCTN6	WS-3|WS3|p27	dynactin subunit 6	protein-coding
222056	chr8	130293301	130294080	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	2843	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
67095	chr14	68281701	68281900	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	346987	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
217689	chr8	30119021	30119480	+	0	NA	intron (NM_001128208, intron 3 of 3)	LTR5B|LTR|ERVK	23842	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
12769	chr1	109639251	109639350	+	0	NA	Intergenic	Intergenic	15312	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
129450	chr2	69518871	69519030	+	0	NA	intron (NM_001371577, intron 12 of 14)	intron (NM_001371577, intron 12 of 14)	1221	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
130667	chr2	86319851	86320150	+	0	NA	intron (NM_001164730, intron 1 of 6)	MLT1C|LTR|ERVL-MaLR	17626	NM_001164731	65055		NM_022912	ENSG00000068615	REEP1	C2orf23|DSMA6|HMN5B|HMND12|HMNR6|SPG31|Yip2a	receptor accessory protein 1	protein-coding
200669	chr6	137202071	137202530	+	0	NA	intron (NM_001363526, intron 6 of 7)	intron (NM_001363526, intron 6 of 7)	16896	NM_001363526	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
46501	chr11	128376071	128376630	+	0	NA	Intergenic	L2a|LINE|L2	145960	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
97682	chr17	44304171	44304350	+	0	NA	intron (NR_110802, intron 3 of 3)	L1MB3|LINE|L1	4171	NR_110802	101926996		NR_110802		RUNDC3A-AS1	-	RUNDC3A antisense RNA 1	ncRNA
29148	chr10	68632371	68632530	+	0	NA	intron (NM_030625, intron 3 of 11)	intron (NM_030625, intron 3 of 11)	72113	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
145303	chr20	41049821	41050080	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	21128	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
72067	chr15	28887821	28888080	+	0	NA	intron (NM_001353788, intron 1 of 14).2	intron (NM_001353788, intron 1 of 14).2	1976	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
166240	chr3	112185671	112185830	+	0	NA	intron (NM_183061, intron 20 of 28)	CpG	52327	NR_157393	112806053		NR_157393	ENSG00000261488	TBILA	-	TGF-beta induced lncRNA	ncRNA
231114	chr9	129825271	129825630	+	0	NA	Intergenic	L1MC3|LINE|L1	-1314	NM_000113	1861		NM_000113	ENSG00000136827	TOR1A	AMC5|DQ2|DYT1	torsin family 1 member A	protein-coding
179529	chr4	184958671	184959230	+	0	NA	Intergenic	Intergenic	-20510	NR_039660	100616111		NR_039660	ENSG00000263458	MIR4455	-	microRNA 4455	ncRNA
62263	chr13	98567571	98568450	+	0	NA	intron (NM_001286649, intron 1 of 9)	AluSz|SINE|Alu	9097	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
2437	chr1	9613371	9613730	+	0	NA	3' UTR (NM_001130924, exon 11 of 11)	3' UTR (NM_001130924, exon 11 of 11)	24639	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
148388	chr20	63908201	63908600	+	0	NA	intron (NM_025219, intron 1 of 4)	intron (NM_025219, intron 1 of 4)	-11049	NR_030637	100126329		NR_030637	ENSG00000283206	MIR941-1	MIRN941-1|mir-941-1	microRNA 941-1	ncRNA
156957	chr22	42363071	42363430	+	0	NA	Intergenic	MIR|SINE|MIR	5958	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
108113	chr18	62198351	62198650	+	0	NA	intron (NR_144408, intron 1 of 32)	intron (NR_144408, intron 1 of 32)	11245	NR_144403	57614		NM_020854	ENSG00000134444	RELCH	HsT3308|HsT885|KIAA1468	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	protein-coding
165621	chr3	101693321	101694150	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-7017	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
402	chr1	1060601	1061050	+	0	NA	intron (NR_148960, intron 2 of 3)	intron (NR_148960, intron 2 of 3)	1091	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
65340	chr14	50231101	50232400	+	0	NA	promoter-TSS (NM_006939)	promoter-TSS (NM_006939)	-172	NM_006939	6655		NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
217560	chr8	29371201	29371650	+	0	NA	Intergenic	Intergenic	-20741	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
50367	chr12	47213601	47214430	+	0	NA	intron (NR_026544, intron 2 of 2)	intron (NR_026544, intron 2 of 2)	2428	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
67060	chr14	67818201	67818400	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1479	NM_001321821	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
107061	chr18	32552401	32552700	+	0	NA	Intergenic	Intergenic	40887	NR_003558	441818		NR_003558	ENSG00000293029	WBP11P1	HsT3017	WBP11 pseudogene 1	pseudo
110081	chr19	1511621	1512300	+	0	NA	intron (NM_001367197, intron 1 of 12)	intron (NM_001367197, intron 1 of 12)	1059	NM_001367197	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
200580	chr6	136365871	136366030	+	0	NA	exon (NM_001198616, exon 9 of 17)	exon (NM_001198616, exon 9 of 17)	-76099	NM_001077440	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
103755	chr17	78924921	78925930	+	0	NA	promoter-TSS (NM_003255)	promoter-TSS (NM_003255)	-38	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
64722	chr14	34443271	34443430	+	0	NA	intron (NM_138288, intron 1 of 1)	(GT)n|Simple_repeat|Simple_repeat	18890	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
104235	chr17	80704221	80704880	+	0	NA	intron (NM_020761, intron 3 of 33)	intron (NM_020761, intron 3 of 33)	101082	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
161964	chr3	46280051	46280930	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	38030	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
37547	chr11	18700451	18701180	+	0	NA	intron (NM_153347, intron 1 of 2)	intron (NM_153347, intron 1 of 2)	2036	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
215399	chr7	157499371	157499530	+	0	NA	non-coding (NR_110157, exon 4 of 4)	non-coding (NR_110157, exon 4 of 4)	33219	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
12538	chr1	108589401	108589900	+	0	NA	intron (NM_001010883, intron 1 of 10)	L2|LINE|L2	29550	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
141318	chr2	240458301	240458800	+	0	NA	intron (NM_002081, intron 1 of 8)	intron (NM_002081, intron 1 of 8)	-1850	NR_161169	100130449		NR_024014	ENSG00000218416	GPC1-AS1	-	GPC1 antisense RNA 1	ncRNA
87635	chr16	74538801	74539300	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	68064	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
101183	chr17	65182151	65182730	+	0	NA	intron (NM_003835, intron 9 of 18)	MIR|SINE|MIR	45070	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
182088	chr5	55994501	55996150	+	0	NA	promoter-TSS (NR_120480)	promoter-TSS (NR_120480)	158	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
219487	chr8	73868301	73869200	+	0	NA	intron (NR_073119, intron 1 of 5)	MER21C|LTR|ERVL	10112	NR_073120	55284		NM_018299	ENSG00000104343	UBE2W	UBC-16|UBC16	ubiquitin conjugating enzyme E2 W	protein-coding
156607	chr22	41557371	41557530	+	0	NA	intron (NR_134631, intron 1 of 1)	intron (NR_134631, intron 1 of 1)	3433	NR_134631	105373044		NR_134631	ENSG00000286491	LOC105373044	-	uncharacterized LOC105373044	ncRNA
238184	chrX	136879071	136879680	+	0	NA	promoter-TSS (NR_002735)	promoter-TSS (NR_002735)	-104	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
29841	chr10	72340221	72341530	+	0	NA	intron (NR_157570, intron 4 of 8)	intron (NR_157570, intron 4 of 8)	14044	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
205230	chr7	7986301	7986680	+	0	NA	intron (NM_138426, intron 1 of 7)	AluY|SINE|Alu	17694	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
104406	chr17	81051821	81052800	+	0	NA	intron (NR_169579, intron 2 of 15)	CpG	-5424	NM_001385147	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
37165	chr11	13873271	13873830	+	0	NA	Intergenic	Intergenic	-2934	NR_149109	105376561		NR_149109	ENSG00000254930	LINC02545	-	long intergenic non-protein coding RNA 2545	ncRNA
122374	chr19	49385971	49386130	+	0	NA	intron (NR_110729, intron 1 of 2)	AluSx|SINE|Alu	2031	NR_110729	101928295		NR_110729	ENSG00000268686	LOC101928295	-	uncharacterized LOC101928295	ncRNA
4109	chr1	19313771	19314150	+	0	NA	intron (NM_001040126, intron 2 of 7)	MER5A1|DNA|hAT-Charlie	1634	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
225362	chr9	34701051	34701800	+	0	NA	Intergenic	CpG	8711	NM_002989	6366		NM_002989	ENSG00000137077	CCL21	6Ckine|CKb9|ECL|SCYA21|SLC|TCA4	C-C motif chemokine ligand 21	protein-coding
78588	chr15	93043801	93044000	+	0	NA	3' UTR (NM_001166289, exon 4 of 4)	3' UTR (NM_001166289, exon 4 of 4)	29256	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
228125	chr9	96652751	96653380	+	0	NA	intron (NM_153698, intron 2 of 5)	AluY|SINE|Alu	2252	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
55746	chr12	108367551	108367650	+	0	NA	Intergenic	Intergenic	-28289	NM_004072	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
186394	chr5	135190801	135191680	+	0	NA	intron (NR_161235, intron 3 of 5)	CpG	56937	NR_037895	340073		NR_037895	ENSG00000249647	LINC02900	C5orf66-AS2	long intergenic non-protein coding RNA 2900	ncRNA
211322	chr7	104207171	104208750	+	0	NA	promoter-TSS (NM_181747)	promoter-TSS (NM_181747)	53	NM_002553	5001		NM_002553	ENSG00000164815	ORC5	ORC5L|ORC5P|ORC5T|PPP1R117	origin recognition complex subunit 5	protein-coding
54779	chr12	94175951	94176250	+	0	NA	intron (NM_005761, intron 2 of 30)	intron (NM_005761, intron 2 of 30)	27523	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
170071	chr3	182912551	182913200	+	0	NA	intron (NM_014616, intron 28 of 29)	intron (NM_014616, intron 28 of 29)	67663	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
78312	chr15	90933771	90934600	+	0	NA	promoter-TSS (NM_001323620)	promoter-TSS (NM_001323620)	-435	NM_001323619	55898		NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|OOHE|SMAP-1|SMAP1|UNC-45A	unc-45 myosin chaperone A	protein-coding
94013	chr17	26603761	26604280	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	485221	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
37190	chr11	14270971	14271730	+	0	NA	Intergenic	L2b|LINE|L2	87135	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
207793	chr7	50262901	50263700	+	0	NA	Intergenic	Intergenic	-40764	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
219333	chr8	70216521	70218700	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	-146358	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
229053	chr9	114340151	114340830	+	0	NA	intron (NM_001317952, intron 20 of 20)	intron (NM_001317952, intron 20 of 20)	10621	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
31548	chr10	97069851	97070550	+	0	NA	intron (NM_003061, intron 4 of 36)	MLT1F1|LTR|ERVL-MaLR	-32556	NR_038330	100505540		NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
169159	chr3	156561721	156561980	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-6650	NM_001308197	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
130291	chr2	84901751	84902050	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-3756	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
106704	chr18	23437251	23438430	+	0	NA	exon (NM_032933, exon 1 of 15)	exon (NM_032933, exon 1 of 15)	121	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
191462	chr6	10839501	10839930	+	0	NA	Intergenic	L1PB3|LINE|L1	-1160	NM_001242385	4117		NM_005906	ENSG00000111837	MAK	RP62	male germ cell associated kinase	protein-coding
98421	chr17	46649971	46650380	+	0	NA	intron (NR_040116, intron 7 of 19).2	intron (NR_040116, intron 7 of 19).2	59441	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
66374	chr14	61480121	61480400	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	89934	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
218947	chr8	60967351	60967880	+	0	NA	non-coding (NR_034003, exon 1 of 2)	non-coding (NR_034003, exon 1 of 2)	133	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
197544	chr6	79071671	79071830	+	0	NA	intron (NM_017934, intron 4 of 39)	intron (NM_017934, intron 4 of 39)	6504	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
205384	chr7	14691601	14691930	+	0	NA	intron (NM_001350707, intron 9 of 25)	intron (NM_001350707, intron 9 of 25)	149685	NM_145695	1607		NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
36835	chr11	10291971	10292330	+	0	NA	intron (NM_030962, intron 1 of 39)	L1MC4|LINE|L1	2057	NM_030962	81846		NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
52005	chr12	53972501	53972730	+	0	NA	promoter-TSS (NM_014212)	promoter-TSS (NM_014212)	-511	NM_014212	3227		NM_014212	ENSG00000123388	HOXC11	HOX3H	homeobox C11	protein-coding
131308	chr2	96115971	96118090	+	0	NA	promoter-TSS (NM_000682)	promoter-TSS (NM_000682)	-459	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
106953	chr18	31162451	31163380	+	0	NA	promoter-TSS (NM_004948)	promoter-TSS (NM_004948)	-59	NM_004948	1823		NM_004948	ENSG00000134765	DSC1	CDHF1|DG2/DG3	desmocollin 1	protein-coding
158117	chr22	50048001	50048200	+	0	NA	intron (NM_001350317, intron 5 of 13)	AluSx1|SINE|Alu	10127	NM_001350317	164714		NM_001080447	ENSG00000138892	TTLL8	-	tubulin tyrosine ligase like 8	protein-coding
118197	chr19	35135251	35136150	+	0	NA	promoter-TSS (NM_139284)	promoter-TSS (NM_139284)	-641	NM_139284	163175		NM_139284	ENSG00000153902	LGI4	AMC1|AMCNMY|LGIL3	leucine rich repeat LGI family member 4	protein-coding
139494	chr2	224526801	224527700	+	0	NA	intron (NM_003590, intron 3 of 15)	intron (NM_003590, intron 3 of 15)	42705	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
182869	chr5	69844071	69845880	+	0	NA	intron (NR_029426, intron 1 of 9).2	LTR12E|LTR|ERV1	163	NR_029426	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
152535	chr22	20983771	20983930	+	0	NA	intron (NM_006767, intron 2 of 20)	L2c|LINE|L2	1553	NM_006767	8216		NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|NS2|SWNTS2	leucine zipper like post translational regulator 1	protein-coding
66	chr1	279821	280330	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-73478	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
1223	chr1	2270851	2271430	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	42821	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
51033	chr12	49760001	49760400	+	0	NA	intron (NM_001098576, intron 8 of 9)	intron (NM_001098576, intron 8 of 9)	18391	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
80876	chr16	3613071	3613230	+	0	NA	Intergenic	L1MB7|LINE|L1	-1544	NM_032444	84464		NM_032444	ENSG00000188827	SLX4	BTBD12|FANCP|MUS312	SLX4 structure-specific endonuclease subunit	protein-coding
135313	chr2	160328401	160329000	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	-56805	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
23444	chr1	228452951	228453730	+	0	NA	Intergenic	Intergenic	4533	NM_033445	92815		NM_033445	ENSG00000181218	H2AC25	H2AW|HIST3H2A	H2A clustered histone 25	protein-coding
191575	chr6	12009971	12010130	+	0	NA	Intergenic	Intergenic	-2262	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
180739	chr5	31867201	31867800	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	68659	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
151187	chr21	45080951	45081830	+	0	NA	intron (NM_001346688, intron 1 of 11)	Tigger5|DNA|TcMar-Tigger	6339	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
220820	chr8	102812801	102813700	+	0	NA	Intergenic	LTR33|LTR|ERVL	6428	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
185467	chr5	131280951	131281880	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	17362	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
106603	chr18	22273451	22274030	+	0	NA	Intergenic	(CTC)n|Simple_repeat|Simple_repeat	104151	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
90913	chr17	2537971	2538330	+	0	NA	Intergenic	Intergenic	-26262	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
207694	chr7	45784371	45784530	+	0	NA	Intergenic	Intergenic	-15432	NR_024271	641977		NR_024271	ENSG00000291207	SEPTIN7P2	SEPT13|SEPT7B|SEPT7P2	septin 7 pseudogene 2	pseudo
25925	chr10	11327871	11328030	+	0	NA	intron (NM_001326330, intron 12 of 12)	intron (NM_001326330, intron 12 of 12)	16724	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70305	chr14	101812101	101812530	+	0	NA	intron (NM_178587, intron 1 of 11)	intron (NM_178587, intron 1 of 11)	2452	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
176882	chr4	102758671	102759030	+	0	NA	intron (NM_005908, intron 1 of 16)	intron (NM_005908, intron 1 of 16)	2118	NM_005908	4126		NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
56350	chr12	113065251	113065550	+	0	NA	intron (NM_004416, intron 2 of 9)	intron (NM_004416, intron 2 of 9)	8670	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
33000	chr10	110567021	110568460	+	0	NA	promoter-TSS (NM_005445)	promoter-TSS (NM_005445)	45	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
89242	chr16	88644121	88644580	+	0	NA	intron (NM_000101, intron 5 of 5)	intron (NM_000101, intron 5 of 5)	5778	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
2621	chr1	10186521	10187280	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-23670	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
145597	chr20	44598451	44598950	+	0	NA	5' UTR (NM_001281444, exon 4 of 6)	5' UTR (NM_001281444, exon 4 of 6)	16121	NM_001281445	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
178428	chr4	147791701	147791900	+	0	NA	intron (NM_024605, intron 1 of 22)	AluSq|SINE|Alu	9205	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
171625	chr3	197463751	197464250	+	0	NA	Intergenic	Intergenic	45661	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
70456	chr14	102055171	102055880	+	0	NA	3' UTR (NM_001376, exon 78 of 78)	3' UTR (NM_001376, exon 78 of 78)	31519	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
150539	chr21	42983051	42983350	+	0	NA	intron (NM_001320694, intron 1 of 10)	L1MB3|LINE|L1	8638	NM_004571	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
17878	chr1	160067601	160067800	+	0	NA	intron (NM_002241, intron 1 of 1)	intron (NM_002241, intron 1 of 1)	2460	NM_002241	3766		NM_002241	ENSG00000177807	KCNJ10	BIRK-10|KCNJ13-PEN|KIR1.2|KIR4.1|SESAME	potassium inwardly rectifying channel subfamily J member 10	protein-coding
180865	chr5	32612451	32612550	+	0	NA	Intergenic	Intergenic	26943	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
131971	chr2	100137921	100138280	+	0	NA	intron (NM_002285, intron 1 of 23)	intron (NM_002285, intron 1 of 23)	4490	NM_002285	3899		NM_002285	ENSG00000144218	AFF3	KINS|LAF4|MLLT2-like	ALF transcription elongation factor 3	protein-coding
187902	chr5	148836171	148836330	+	0	NA	Intergenic	Intergenic	9639	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
8893	chr1	43853251	43853750	+	0	NA	intron (NM_001270466, intron 4 of 4)	MIR|SINE|MIR	14878	NR_106727	102464830		NR_106727	ENSG00000283477	MIR6079	hsa-mir-6079	microRNA 6079	ncRNA
111923	chr19	4724601	4725830	+	0	NA	Intergenic	AluJr|SINE|Alu	-1373	NR_169285	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
44339	chr11	102418121	102418380	+	0	NA	intron (NM_052932, intron 2 of 4)	L1PA15|LINE|L1	34515	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
65825	chr14	54889171	54889330	+	0	NA	intron (NM_001024024, intron 1 of 6)	intron (NM_001024024, intron 1 of 6)	-11057	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
92064	chr17	7512121	7512480	+	0	NA	exon (NM_000937, exon 26 of 30)	exon (NM_000937, exon 26 of 30)	27934	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
224579	chr9	20103151	20103330	+	0	NA	Intergenic	L1PA3|LINE|L1	307998	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
125963	chr2	25230151	25230450	+	0	NA	non-coding (NR_135490, exon 24 of 24)	non-coding (NR_135490, exon 24 of 24)	21831	NM_001320893	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
213740	chr7	140397701	140399150	+	0	NA	non-coding (NR_156489, exon 1 of 15)	non-coding (NR_156489, exon 1 of 15)	105	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
119932	chr19	41835921	41837800	+	0	NA	TTS (NM_001291419)	TTS (NM_001291419)	6867	NM_001291419	147719		NM_173506	ENSG00000273111	LYPD4	SMR	LY6/PLAUR domain containing 4	protein-coding
182735	chr5	68266851	68267580	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-21304	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
17171	chr1	156217601	156218730	+	0	NA	intron (NM_001199664, intron 1 of 4)	L1ME5|LINE|L1	5177	NM_001199653	11243		NM_007221	ENSG00000160783	PMF1	-	polyamine modulated factor 1	protein-coding
118222	chr19	35177371	35177930	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	22915	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
187652	chr5	143056501	143056900	+	0	NA	intron (NR_146198, intron 16 of 22)	intron (NR_146198, intron 16 of 22)	-135800	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
174046	chr4	26878821	26879300	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	18219	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
38623	chr11	46342001	46343050	+	0	NA	intron (NM_201532, intron 1 of 30)	intron (NM_201532, intron 1 of 30)	-2742	NM_201533	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
148863	chr21	8427531	8428900	+	0	NA	Intergenic	Intergenic	-4315	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
232622	chr9	136445351	136446080	+	0	NA	exon (NM_014866, exon 29 of 32)	exon (NM_014866, exon 29 of 32)	-5870	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
25717	chr10	9006671	9006830	+	0	NA	Intergenic	Intergenic	108761	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
35606	chr11	1760751	1760850	+	0	NA	intron (NM_001909, intron 2 of 8)	intron (NM_001909, intron 2 of 8)	3127	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
135019	chr2	154698651	154699150	+	0	NA	exon (NM_001260510, exon 1 of 1)	exon (NM_001260510, exon 1 of 1)	205	NM_001260510	3760		NM_002239	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	potassium inwardly rectifying channel subfamily J member 3	protein-coding
205017	chr7	6489371	6489730	+	0	NA	Intergenic	AluSg|SINE|Alu	-5398	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
11285	chr1	89199721	89200050	+	0	NA	promoter-TSS (NM_052941)	promoter-TSS (NM_052941)	-943	NM_052941	115361		NM_052941	ENSG00000162654	GBP4	Mpa2	guanylate binding protein 4	protein-coding
8364	chr1	40313971	40314550	+	0	NA	exon (NM_001852, exon 4 of 32)	exon (NM_001852, exon 4 of 32)	3026	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
97827	chr17	44902871	44903430	+	0	NA	promoter-TSS (NM_001258400)	promoter-TSS (NM_001258400)	-680	NM_001258400	100528020		NM_001258400	ENSG00000214447	FAM187A	-	family with sequence similarity 187 member A	protein-coding
206352	chr7	30439421	30439750	+	0	NA	intron (NR_149002, intron 9 of 14)	L1HS|LINE|L1	39199	NM_006092	10392		NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1|hNod1	nucleotide binding oligomerization domain containing 1	protein-coding
112958	chr19	7814871	7815630	+	0	NA	Intergenic	Intergenic	-14968	NM_001159944	115704		NM_145245	ENSG00000142459	EVI5L	-	ecotropic viral integration site 5 like	protein-coding
165162	chr3	72329451	72329550	+	0	NA	Intergenic	Intergenic	117123	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
168325	chr3	141736521	141737080	+	0	NA	Intergenic	Intergenic	-1409	NM_183237	9616		NM_014245	ENSG00000114125	RNF7	CKBBP1|ROC2|SAG|rbx2	ring finger protein 7	protein-coding
185838	chr5	132469421	132469880	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	21123	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
49051	chr12	14395931	14396800	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	11084	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
18593	chr1	165596321	165596580	+	0	NA	Intergenic	AluSx|SINE|Alu	-14295	NR_026744	400794		NR_026744	ENSG00000237463	LRRC52-AS1	-	LRRC52 antisense RNA 1	ncRNA
93809	chr17	20569151	20569270	+	0	NA	Intergenic	Intergenic	-10514	NM_001190790	256223		NM_001190790	ENSG00000214819	CDRT15L2	-	CMT1A duplicated region transcript 15 like 2	protein-coding
115490	chr19	15376751	15377150	+	0	NA	intron (NM_005858, intron 2 of 13)	intron (NM_005858, intron 2 of 13)	2837	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
155410	chr22	38393371	38394150	+	0	NA	intron (NR_002821, intron 1 of 4)	intron (NR_002821, intron 1 of 4)	5155	NM_001289912	102800317		NM_001289912	ENSG00000283900	TPTEP2-CSNK1E	LOC400927-CSNK1E	TPTEP2-CSNK1E readthrough	protein-coding
180951	chr5	35370551	35370650	+	0	NA	Intergenic	Intergenic	-140113	NM_000949	5618		NM_000949	ENSG00000113494	PRLR	HPRL|MFAB|RI-PRLR|hPRLrI	prolactin receptor	protein-coding
75094	chr15	64438571	64439280	+	0	NA	intron (NR_135855, intron 10 of 11)	intron (NR_135855, intron 10 of 11)	-21653	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
105214	chr17	82330351	82331530	+	0	NA	intron (NM_003004, intron 1 of 4)	intron (NM_003004, intron 1 of 4)	2826	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
115761	chr19	16330101	16331600	+	0	NA	Intergenic	AluJo|SINE|Alu	6024	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
112608	chr19	6739201	6740400	+	0	NA	intron (NR_110231, intron 1 of 14)	intron (NR_110231, intron 1 of 14)	120	NM_001288963	9322		NM_004240	ENSG00000125733	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
145411	chr20	41694501	41695200	+	0	NA	Intergenic	L2a|LINE|L2	-76473	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
121721	chr19	47696301	47697400	+	0	NA	intron (NM_015711, intron 11 of 14)	G-rich|Low_complexity|Low_complexity	-16572	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
229359	chr9	120934401	120934830	+	0	NA	Intergenic	L2c|LINE|L2	-5442	NM_001190945	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
235912	chrX	53079571	53080100	+	0	NA	3' UTR (NM_018969, exon 2 of 2)	3' UTR (NM_018969, exon 2 of 2)	-2532	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
219039	chr8	65710851	65711350	+	0	NA	TTS (NM_001145838)	TTS (NM_001145838)	41227	NM_001145838	9650		NM_014637	ENSG00000066855	MTFR1	CHPPR|FAM54A2	mitochondrial fission regulator 1	protein-coding
238208	chrX	137566901	137567300	+	0	NA	exon (NM_001330661, exon 1 of 3)	exon (NM_001330661, exon 1 of 3)	973	NM_001330661	7547		NM_003413	ENSG00000156925	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
69194	chr14	92665251	92666100	+	0	NA	intron (NM_024832, intron 7 of 9)	AluY|SINE|Alu	82952	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
180601	chr5	16351521	16351600	+	0	NA	Intergenic	Intergenic	89542	NR_104625	101929505		NR_104625	ENSG00000248150	LINC02150	-	long intergenic non-protein coding RNA 2150	ncRNA
188160	chr5	150442121	150442830	+	0	NA	TTS (NM_001025070)	TTS (NM_001025070)	7264	NM_005617	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
175854	chr4	78942871	78943230	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	-3612	NM_001350106	152559		NM_177453	ENSG00000163291	PAQR3	RKTG	progestin and adipoQ receptor family member 3	protein-coding
235283	chrX	41921571	41921730	+	0	NA	intron (NM_001126055, intron 1 of 24)	intron (NM_001126055, intron 1 of 24)	1384	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
167279	chr3	128624971	128625130	+	0	NA	intron (NM_002950, intron 8 of 9)	intron (NM_002950, intron 8 of 9)	25768	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
114437	chr19	12694071	12694230	+	0	NA	intron (NM_032301, intron 3 of 9)	AluSc5|SINE|Alu	2481	NM_032301	84261		NM_032301	ENSG00000132004	FBXW9	Fbw9|MEC-15	F-box and WD repeat domain containing 9	protein-coding
63132	chr13	113448821	113449980	+	0	NA	promoter-TSS (NM_199162)	promoter-TSS (NM_199162)	-242	NM_199162	113622		NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
241	chr1	906021	906280	+	0	NA	Intergenic	Intergenic	13542	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
162126	chr3	46938771	46939130	+	0	NA	intron (NM_144716, intron 3 of 7)	L1ME3Cz|LINE|L1	37551	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
209285	chr7	75952071	75952300	+	0	NA	intron (NM_001382658, intron 2 of 16)	SVA_D|Retroposon|SVA	8402	NR_002955	677801		NR_002955	ENSG00000201643	SNORA14A	ACA14a	small nucleolar RNA, H/ACA box 14A	snoRNA
233141	chr9	137159421	137159680	+	0	NA	intron (NM_007327, intron 8 of 19)	intron (NM_007327, intron 8 of 19)	9720	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
236065	chrX	56494921	56495180	+	0	NA	Intergenic	L1PA6|LINE|L1	-68577	NM_013444	29978		NM_013444	ENSG00000188021	UBQLN2	ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2	ubiquilin 2	protein-coding
184609	chr5	103358271	103358430	+	0	NA	Intergenic	Intergenic	94456	NM_001377288	90355		NM_033211	ENSG00000181751	MACIR	C5orf30	macrophage immunometabolism regulator	protein-coding
174373	chr4	38902571	38902950	+	0	NA	intron (NM_138389, intron 4 of 14)	intron (NM_138389, intron 4 of 14)	34728	NR_030300	693159		NR_030300	ENSG00000207944	MIR574	MIR574-3p|MIRN574|hsa-mir-574|mir-574	microRNA 574	ncRNA
142319	chr20	3668721	3668980	+	0	NA	3' UTR (NM_001282447, exon 22 of 22)	3' UTR (NM_001282447, exon 22 of 22)	-5451	NM_145762	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
86306	chr16	58731901	58732100	+	0	NA	intron (NM_001286220, intron 1 of 8)	intron (NM_001286220, intron 1 of 8)	2316	NM_001286220	2806		NM_002080	ENSG00000125166	GOT2	DEE82|KAT4|KATIV|KYAT4|mitAAT	glutamic-oxaloacetic transaminase 2	protein-coding
181089	chr5	36884171	36884330	+	0	NA	intron (NM_133433, intron 1 of 46)	intron (NM_133433, intron 1 of 46)	7481	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
39844	chr11	62367851	62368200	+	0	NA	intron (NM_001083926, intron 4 of 6)	AluSz|SINE|Alu	30577	NM_001083926	80150		NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase and isoaspartyl peptidase 1	protein-coding
137218	chr2	191555121	191555780	+	0	NA	Intergenic	Intergenic	-122622	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
40645	chr11	64728171	64728330	+	0	NA	intron (NM_001098670, intron 15 of 16)	intron (NM_001098670, intron 15 of 16)	-5053	NM_001376267	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
27940	chr10	42074071	42074580	+	0	NA	Intergenic	Intergenic	293720	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
6955	chr1	31760451	31761450	+	0	NA	intron (NM_001294336, intron 1 of 31)	intron (NM_001294336, intron 1 of 31)	-2215	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
58246	chr12	128784571	128784930	+	0	NA	Intergenic	MER96B|DNA|hAT-Tip100	39208	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
188019	chr5	149565801	149566200	+	0	NA	Intergenic	AluSq2|SINE|Alu	-14561	NM_001025105	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
145742	chr20	45093421	45093750	+	0	NA	3' UTR (NM_001322799, exon 4 of 4)	3' UTR (NM_001322799, exon 4 of 4)	7542	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
184959	chr5	113273871	113274330	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	20838	NM_002387	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
34440	chr10	132420271	132420630	+	0	NA	Intergenic	Intergenic	23250	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
204122	chr7	2311471	2311830	+	0	NA	intron (NM_013321, intron 1 of 10)	intron (NM_013321, intron 1 of 10)	2791	NM_013321	29886		NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
76875	chr15	77966721	77967330	+	0	NA	Intergenic	Intergenic	-22464	NR_157580	440292		NR_157580		COMMD4P1	-	COMM domain containing 4 pseudogene 1	pseudo
75968	chr15	70491021	70491600	+	0	NA	Intergenic	Intergenic	14618	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
4132	chr1	19330301	19330500	+	0	NA	intron (NR_109848, intron 9 of 9)	intron (NR_109848, intron 9 of 9)	18074	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
16639	chr1	155128901	155129730	+	0	NA	intron (NM_182685, intron 1 of 3)	intron (NM_182685, intron 1 of 3)	1439	NM_004428	1942		NM_004428	ENSG00000169242	EFNA1	B61|ECKLG|EFL1|EPLG1|GMAN|LERK-1|LERK1|TNFAIP4	ephrin A1	protein-coding
119505	chr19	40489501	40489700	+	0	NA	intron (NM_020971, intron 3 of 35)	AluSz|SINE|Alu	22599	NM_020971	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
13922	chr1	120105271	120105430	+	0	NA	Intergenic	Intergenic	-35647	NM_001200001	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
138838	chr2	216500121	216500780	+	0	NA	intron (NM_000998, intron 3 of 3)	intron (NM_000998, intron 3 of 3)	1606	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
144530	chr20	35711601	35712500	+	0	NA	intron (NM_184234, intron 12 of 16)	intron (NM_184234, intron 12 of 16)	12645	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
13893	chr1	119611671	119611930	+	0	NA	Intergenic	Intergenic	-12509	NR_036540	644242		NR_036540	ENSG00000260941	LINC00622	-	long intergenic non-protein coding RNA 622	ncRNA
98509	chr17	47493971	47494430	+	0	NA	Intergenic	Intergenic	-1580	NR_033934	653479		NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
165078	chr3	71476771	71477130	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	65139	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
79527	chr16	813071	813230	+	0	NA	intron (NM_001013638, intron 2 of 2)	intron (NM_001013638, intron 2 of 2)	7707	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
44137	chr11	96127051	96127350	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-203093	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
49826	chr12	32134251	32135000	+	0	NA	intron (NR_148725, intron 1 of 9)	L3|LINE|CR1	27778	NR_148725	636		NM_001714	ENSG00000151746	BICD1	BICD|bic-D 1	BICD cargo adaptor 1	protein-coding
176750	chr4	101597201	101597430	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-193292	NM_001127507	55024		NM_017935	ENSG00000153064	BANK1	BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding
179553	chr4	185144821	185145280	+	0	NA	exon (NM_001151, exon 2 of 4)	exon (NM_001151, exon 2 of 4)	1784	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
154531	chr22	36145971	36146130	+	0	NA	intron (NM_145640, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	14705	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
60804	chr13	45332801	45333400	+	0	NA	TTS (NM_001286273)	TTS (NM_001286273)	3347	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
220571	chr8	100806801	100807000	+	0	NA	Intergenic	Intergenic	-84812	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
177140	chr4	108119421	108120150	+	0	NA	intron (NM_016269, intron 3 of 11)	Charlie1a|DNA|hAT-Charlie	47012	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
114896	chr19	13912971	13913330	+	0	NA	intron (NM_017721, intron 4 of 28)	intron (NM_017721, intron 4 of 28)	6949	NM_017721	54862		NM_017721	ENSG00000132024	CC2D1A	Aki-1|FREUD-1|Freud-1/Aki1|Lgd2|MRT3|TAPE	coiled-coil and C2 domain containing 1A	protein-coding
154816	chr22	37044001	37044530	+	0	NA	Intergenic	Intergenic	-7471	NM_001282684	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
135160	chr2	157572751	157572930	+	0	NA	intron (NM_001111031, intron 2 of 8)	intron (NM_001111031, intron 2 of 8)	24720	NM_001111031	130399		NM_145259	ENSG00000123612	ACVR1C	ACVRLK7|ALK7	activin A receptor type 1C	protein-coding
235666	chrX	48573851	48575080	+	0	NA	promoter-TSS (NM_006743)	promoter-TSS (NM_006743)	-19	NM_006743	5935		NM_006743	ENSG00000102317	RBM3	IS1-RNPL|RNPL	RNA binding motif protein 3	protein-coding
187535	chr5	142713021	142713880	+	0	NA	Intergenic	Intergenic	-15380	NM_001257205	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
216598	chr8	22046421	22046880	+	0	NA	intron (NM_001304478, intron 4 of 4)	intron (NM_001304478, intron 4 of 4)	-2281	NM_001323397	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
133991	chr2	130831421	130831680	+	0	NA	Intergenic	Intergenic	-5364	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
157869	chr22	49632671	49633030	+	0	NA	intron (NM_001289922, intron 1 of 5)	intron (NM_001289922, intron 1 of 5)	24669	NR_110523	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
92998	chr17	17179051	17179760	+	0	NA	intron (NM_015134, intron 21 of 22)	AluSg|SINE|Alu	26928	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
237388	chrX	119488101	119488300	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-19080	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
167246	chr3	128494501	128494880	+	0	NA	intron (NR_125398, intron 2 of 2)	AluJb|SINE|Alu	-1489	NM_032638	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
184731	chr5	109687451	109687850	+	0	NA	Intergenic	Intergenic	-1716	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
165934	chr3	107524601	107526100	+	0	NA	intron (NM_020235, intron 1 of 16)	CpG	2388	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
28217	chr10	45076951	45077250	+	0	NA	Intergenic	Intergenic	76177	NM_006963	7570		NM_006963	ENSG00000165512	ZNF22	HKR-T1|KOX15|ZNF422|Zfp422	zinc finger protein 22	protein-coding
32524	chr10	102869171	102870100	+	0	NA	intron (NM_020682, intron 1 of 10)	CpG	165	NM_020682	57412		NM_020682	ENSG00000214435	AS3MT	CYT19	arsenite methyltransferase	protein-coding
232400	chr9	135993851	135994350	+	0	NA	Intergenic	Intergenic	-32727	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
20904	chr1	202166871	202167030	+	0	NA	Intergenic	Intergenic	-1101	NR_002930	148713		NR_002930	ENSG00000293457	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase receptor type V, pseudogene	pseudo
75324	chr15	65310021	65310480	+	0	NA	Intergenic	L1MC4|LINE|L1	5573	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
157735	chr22	46592021	46592810	+	0	NA	intron (NM_001366660, intron 1 of 17)	FLAM_A|SINE|Alu	15327	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
183251	chr5	76410021	76410480	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	6965	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
109315	chr19	580451	581080	+	0	NA	exon (NM_198589, exon 4 of 8)	exon (NM_198589, exon 4 of 8)	8169	NM_198589	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
193595	chr6	30718751	30719130	+	0	NA	Intergenic	Intergenic	-1412	NM_001293213	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
87602	chr16	74304551	74304650	+	0	NA	intron (NM_002811, intron 6 of 6)	MIR3|SINE|MIR	7786	NM_002811	5713		NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	proteasome 26S subunit, non-ATPase 7	protein-coding
116189	chr19	17465201	17465400	+	0	NA	Intergenic	AluJb|SINE|Alu	-4374	NM_138454	115861		NM_138454	ENSG00000171773	NXNL1	RDCVF|TXNL6	nucleoredoxin like 1	protein-coding
192744	chr6	26401751	26403050	+	0	NA	5' UTR (NM_001145009, exon 1 of 10)	5' UTR (NM_001145009, exon 1 of 10)	125	NM_001145009	11119		NM_007048	ENSG00000026950	BTN3A1	BT3.1|BTF5|BTN3.1|CD277	butyrophilin subfamily 3 member A1	protein-coding
86937	chr16	68103421	68103680	+	0	NA	intron (NM_173165, intron 1 of 9)	L1M4|LINE|L1	18180	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
73888	chr15	50428651	50428950	+	0	NA	intron (NM_001128610, intron 1 of 19)	MER44C|DNA|TcMar-Tigger	4395	NM_005154	9101		NM_005154	ENSG00000138592	USP8	HumORF8|PITA4|SPG59|UBPY	ubiquitin specific peptidase 8	protein-coding
152652	chr22	21564771	21565130	+	0	NA	intron (NM_001256355, intron 1 of 3)	intron (NM_001256355, intron 1 of 3)	-2597	NM_001256356	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
22619	chr1	223514321	223514730	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	121110	NM_152610	164127		NM_152610	ENSG00000178395	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
147184	chr20	56516071	56516230	+	0	NA	intron (NM_080615, intron 1 of 6)	intron (NM_080615, intron 1 of 6)	-8594	NM_001012971	200232		NM_001012971	ENSG00000124103	FAM209A	C20orf106|dJ1153D9.3	family with sequence similarity 209 member A	protein-coding
61262	chr13	50073771	50074130	+	0	NA	intron (NR_152566, intron 2 of 13)	intron (NR_152566, intron 2 of 13)	8091	NR_152568	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
203645	chr7	979201	979400	+	0	NA	intron (NR_156697, intron 4 of 4)	LTR64|LTR|ERV1	-3751	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
105800	chr18	2913351	2913650	+	0	NA	3' UTR (NM_032048, exon 8 of 8)	3' UTR (NM_032048, exon 8 of 8)	33123	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
216566	chr8	21911601	21912900	+	0	NA	exon (NM_003974, exon 2 of 5)	exon (NM_003974, exon 2 of 5)	1440	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
53711	chr12	68596051	68596350	+	0	NA	Intergenic	Intergenic	-14699	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
235698	chrX	48801001	48802530	+	0	NA	promoter-TSS (NM_001321231)	promoter-TSS (NM_001321231)	-184	NM_001321229	10013		NM_006044	ENSG00000094631	HDAC6	CPBHM|HD6|JM21|KDAC6|PPP1R90	histone deacetylase 6	protein-coding
73181	chr15	41498171	41498530	+	0	NA	intron (NM_002220, intron 1 of 6)	intron (NM_002220, intron 1 of 6)	4476	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
104094	chr17	80265301	80266650	+	0	NA	intron (NM_020954, intron 2 of 16)	ERVL-B4-int|LTR|ERVL	5123	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
152902	chr22	22747051	22747580	+	0	NA	Intergenic	Intergenic	-75461	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
114868	chr19	13869201	13870230	+	0	NA	intron (NR_146097, intron 1 of 1)	intron (NR_146097, intron 1 of 1)	4512	NR_146096	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
11496	chr1	90838121	90838380	+	0	NA	intron (NR_147931, intron 1 of 2)	AluSq2|SINE|Alu	-2089	NR_147932	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
54259	chr12	86764351	86764450	+	0	NA	intron (NM_001351285, intron 1 of 8)	L1PA3|LINE|L1	-19251	NR_162123	113839519		NR_162123		MIR3059	-	microRNA 3059	ncRNA
192643	chr6	26162721	26162980	+	0	NA	intron (NM_138720, intron 1 of 1)	L1MD|LINE|L1	4728	NM_021063	3017		NM_021063	ENSG00000158373	H2BC5	H2B.1B|H2B/a|H2B/b|H2B/g|H2B/h|H2B/k|H2B/l|H2BFA|H2BFB|H2BFG|H2BFH|H2BFK|H2BFL|HIRIP2|HIST1H2BC|HIST1H2BD|HIST1H2BE|HIST1H2BF|HIST1H2BG|HIST1H2BI|dJ221C16.6	H2B clustered histone 5	protein-coding
181383	chr5	40665651	40665950	+	0	NA	Intergenic	Intergenic	-14115	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
64316	chr14	23578871	23579600	+	0	NA	promoter-TSS (NM_032452)	promoter-TSS (NM_032452)	-445	NM_032452	84502		NM_032452	ENSG00000092051	JPH4	JP4|JPHL1	junctophilin 4	protein-coding
67840	chr14	73947471	73948050	+	0	NA	intron (NM_152445, intron 1 of 8)	intron (NM_152445, intron 1 of 8)	-2174	NM_182480	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
174079	chr4	27010101	27010680	+	0	NA	intron (NM_020860, intron 10 of 11)	AluSg|SINE|Alu	149549	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
142013	chr20	1633501	1633700	+	0	NA	promoter-TSS (NR_110090)	promoter-TSS (NR_110090)	92	NR_110090	101929010		NR_110090	ENSG00000237914	SIRPG-AS1	-	SIRPG antisense RNA 1	ncRNA
222326	chr8	133518701	133519330	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	52872	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
140315	chr2	232502551	232504880	+	0	NA	Intergenic	CpG	-15881	NM_004826	9427		NM_004826	ENSG00000171551	ECEL1	DA5D|DINE|ECEX|XCE	endothelin converting enzyme like 1	protein-coding
46230	chr11	124612121	124612580	+	0	NA	intron (NM_052959, intron 1 of 3)	intron (NM_052959, intron 1 of 3)	922	NM_052959	116337		NM_052959	ENSG00000154143	PANX3	PX3	pannexin 3	protein-coding
168541	chr3	146250721	146251130	+	0	NA	promoter-TSS (NM_001128305)	promoter-TSS (NM_001128305)	180	NM_001177304	57088		NM_020353	ENSG00000114698	PLSCR4	TRA1	phospholipid scramblase 4	protein-coding
24004	chr1	235249271	235249880	+	0	NA	intron (NM_016374, intron 6 of 23)	AluYm1|SINE|Alu	-59459	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
134299	chr2	135954121	135954650	+	0	NA	intron (NM_001293312, intron 3 of 14)	intron (NM_001293312, intron 3 of 14)	-30791	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
29061	chr10	67881621	67882180	+	0	NA	Intergenic	Intergenic	-2756	NM_012238	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
204297	chr7	2670701	2671850	+	0	NA	Intergenic	Intergenic	-8247	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
138467	chr2	206556401	206556700	+	0	NA	intron (NM_003812, intron 9 of 25)	intron (NM_003812, intron 9 of 25)	-85937	NM_001102659	200726		NM_001102659	ENSG00000235118	FAM237A	-	family with sequence similarity 237 member A	protein-coding
119164	chr19	39398501	39399030	+	0	NA	non-coding (NR_133915, exon 3 of 3)	non-coding (NR_133915, exon 3 of 3)	7387	NM_001317770	55588		NM_017592	ENSG00000063322	MED29	IXL|MED2	mediator complex subunit 29	protein-coding
208469	chr7	66991651	66992330	+	0	NA	intron (NM_016038, intron 3 of 4)	L1MB7|LINE|L1	3596	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
224546	chr9	19373521	19374050	+	0	NA	non-coding (NR_073201, exon 32 of 32)	non-coding (NR_073201, exon 32 of 32)	6451	NM_001010	6194		NM_001010	ENSG00000137154	RPS6	S6|eS6	ribosomal protein S6	protein-coding
188313	chr5	151205521	151205980	+	0	NA	intron (NM_015621, intron 1 of 8)	intron (NM_015621, intron 1 of 8)	-6384	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
12694	chr1	109482931	109484900	+	0	NA	promoter-TSS (NM_153340)	promoter-TSS (NM_153340)	10	NM_001350175	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
86455	chr16	66931451	66931830	+	0	NA	TTS (NM_016062)	TTS (NM_016062)	2762	NR_024525	51647		NM_016062	ENSG00000166595	CIAO2B	CGI-128|CIA2B|FAM96B|MIP18	cytosolic iron-sulfur assembly component 2B	protein-coding
126848	chr2	31496521	31496780	+	0	NA	Intergenic	L1P1|LINE|L1	-81908	NM_000379	7498		NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
65599	chr14	52173971	52174330	+	0	NA	Intergenic	AluY|SINE|Alu	-93548	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
61591	chr13	72784671	72784830	+	0	NA	intron (NM_006346, intron 2 of 17)	AluSx3|SINE|Alu	2617	NR_146206	10464		NM_006346	ENSG00000083535	PIBF1	C13orf24|CEP90|JBTS33|PIBF	progesterone immunomodulatory binding factor 1	protein-coding
139006	chr2	218367371	218368480	+	0	NA	promoter-TSS (NR_110573)	promoter-TSS (NR_110573)	-23	NR_110573	101928513		NR_110573	ENSG00000225062	CATIP-AS1	-	CATIP antisense RNA 1	ncRNA
202593	chr6	158706351	158706530	+	0	NA	intron (NM_001318745, intron 3 of 14)	intron (NM_001318745, intron 3 of 14)	43037	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
42546	chr11	71674951	71675250	+	0	NA	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	-92225	NM_001005405	440051		NM_001005405	ENSG00000204571	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
72847	chr15	40197501	40198000	+	0	NA	intron (NM_001211, intron 9 of 22)	intron (NM_001211, intron 9 of 22)	-19678	NM_001128629	106821730		NM_001128628	ENSG00000137843	BUB1B-PAK6	PAK-5|PAK-6|PAK5|PAK6	BUB1B-PAK6 readthrough	protein-coding
96284	chr17	39923801	39924100	+	0	NA	intron (NM_001320801, intron 4 of 5)	intron (NM_001320801, intron 4 of 5)	2896	NM_001320801	94103		NM_016471	ENSG00000172057	ORMDL3	-	ORMDL sphingolipid biosynthesis regulator 3	protein-coding
159638	chr3	15303971	15304680	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	28261	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
172220	chr4	1316971	1317730	+	0	NA	intron (NR_123716, intron 3 of 6)	intron (NR_123716, intron 3 of 6)	7559	NM_001297433	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
41142	chr11	65587801	65589080	+	0	NA	intron (NM_001099409, intron 12 of 18)	intron (NM_001099409, intron 12 of 18)	7360	NM_033347	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
143864	chr20	32542851	32543630	+	0	NA	intron (NM_001256798, intron 1 of 10)	L2c|LINE|L2	33281	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
110376	chr19	1916871	1917030	+	0	NA	intron (NM_079834, intron 2 of 6)	intron (NM_079834, intron 2 of 6)	11551	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
16331	chr1	154244451	154244750	+	0	NA	intron (NM_001375623, intron 10 of 27)	AluSx|SINE|Alu	-15127	NR_145714	109617023		NR_145714	ENSG00000201129	SNORA58B	-	small nucleolar RNA, H/ACA box 58B	snoRNA
83604	chr16	28188501	28188880	+	0	NA	intron (NM_015171, intron 1 of 23)	(A)n|Simple_repeat|Simple_repeat	23275	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
4562	chr1	22050301	22050600	+	0	NA	Intergenic	MIR|SINE|MIR	-2259	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
172118	chr4	1168601	1169200	+	0	NA	intron (NM_001128325, intron 6 of 6)	intron (NM_001128325, intron 6 of 6)	3683	NM_012445	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
218996	chr8	63166851	63166950	+	0	NA	TTS (NR_102684)	TTS (NR_102684)	1542	NR_102684	101410533		NR_102684	ENSG00000270673	YTHDF3-DT	YTHDF3-AS1	YTHDF3 divergent transcript	ncRNA
225530	chr9	35747221	35747780	+	0	NA	intron (NM_001330660, intron 1 of 16)	intron (NM_001330660, intron 1 of 16)	1728	NM_020944	57704		NM_020944	ENSG00000070610	GBA2	AD035|NLGase|SPG46	glucosylceramidase beta 2	protein-coding
71977	chr15	25739851	25740150	+	0	NA	intron (NM_024490, intron 2 of 20)	intron (NM_024490, intron 2 of 20)	108825	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
89811	chr16	89558551	89558650	+	0	NA	TTS (NM_001363850)	TTS (NM_001363850)	-2057	NM_001243131	6137		NM_000977	ENSG00000167526	RPL13	BBC1|D16S444E|D16S44E|L13|SEMDIST|eL13	ribosomal protein L13	protein-coding
64123	chr14	22847051	22847400	+	0	NA	3' UTR (NM_004995, exon 10 of 10)	3' UTR (NM_004995, exon 10 of 10)	10640	NM_004995	4323		NM_004995	ENSG00000157227	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14	protein-coding
17677	chr1	157722921	157723800	+	0	NA	Intergenic	Intergenic	-22591	NM_052939	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
49447	chr12	24903021	24903280	+	0	NA	promoter-TSS (NM_001178093)	promoter-TSS (NM_001178093)	-83	NM_001178093	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
105351	chr17	82636571	82637330	+	0	NA	intron (NM_019613, intron 2 of 9)	LTR10G|LTR|ERV1	11494	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
10033	chr1	57307201	57308000	+	0	NA	intron (NM_021080, intron 3 of 16)	intron (NM_021080, intron 3 of 16)	115512	NM_001365793	1600		NM_021080	ENSG00000173406	DAB1	SCA37	DAB adaptor protein 1	protein-coding
8459	chr1	40708351	40709800	+	0	NA	promoter-TSS (NM_001308115)	promoter-TSS (NM_001308115)	-291	NM_001308115	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
164694	chr3	67653771	67654900	+	0	NA	promoter-TSS (NR_109993)	promoter-TSS (NR_109993)	277	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
184812	chr5	111246271	111246830	+	0	NA	intron (NM_001744, intron 1 of 10)	MLT1L|LTR|ERVL-MaLR	22166	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
89118	chr16	88499221	88499830	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	30607	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
234938	chrX	38561151	38561780	+	0	NA	promoter-TSS (NM_004615)	promoter-TSS (NM_004615)	-77	NM_004615	7102		NM_004615	ENSG00000156298	TSPAN7	A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b|XLID58	tetraspanin 7	protein-coding
23483	chr1	228632071	228632900	+	0	NA	Intergenic	AluY|SINE|Alu	-1977	NR_023366	100169755		NR_023366	ENSG00000200381	RNA5S4	RN5S4	RNA, 5S ribosomal 4	rRNA
61986	chr13	80336851	80337500	+	0	NA	exon (NM_005842, exon 2 of 2)	exon (NM_005842, exon 2 of 2)	2484	NM_001318537	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
26964	chr10	26646721	26646980	+	0	NA	non-coding (NR_026794, exon 1 of 5)	non-coding (NR_026794, exon 1 of 5)	3742	NR_026794	731789		NR_026794		FAM238B	LINC00202-2	family with sequence similarity 238 member B	ncRNA
216762	chr8	22485571	22485730	+	0	NA	intron (NM_005605, intron 3 of 13)	intron (NM_005605, intron 3 of 13)	44572	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
8288	chr1	40035851	40036150	+	0	NA	Intergenic	AluSg|SINE|Alu	-4240	NM_001350479	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
203971	chr7	1569571	1571400	+	0	NA	promoter-TSS (NM_032302)	promoter-TSS (NM_032302)	412	NR_027329	114796		NR_021487	ENSG00000230487	PSMG3-AS1	-	PSMG3 antisense RNA 1 (head to head)	ncRNA
42308	chr11	68463771	68464600	+	0	NA	intron (NM_001352362, intron 2 of 24)	AluSg7|SINE|Alu	3433	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
213518	chr7	139076201	139076450	+	0	NA	exon (NM_024625, exon 6 of 9)	exon (NM_024625, exon 6 of 9)	-32168	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
136911	chr2	189661051	189662010	+	0	NA	promoter-TSS (NM_001353493)	promoter-TSS (NM_001353493)	71	NM_019048	54529		NM_019048	ENSG00000138381	ASNSD1	NBLA00058|NS3TP1	asparagine synthetase domain containing 1	protein-coding
39130	chr11	48292871	48293050	+	0	NA	Intergenic	L1P1|LINE|L1	-13263	NM_001004725	256148		NM_001004725	ENSG00000176555	OR4S1	OR11-100	olfactory receptor family 4 subfamily S member 1	protein-coding
164793	chr3	69326521	69327180	+	0	NA	intron (NM_015123, intron 1 of 22)	intron (NM_015123, intron 1 of 22)	59238	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
150728	chr21	43747651	43747950	+	0	NA	intron (NM_001331030, intron 4 of 9)	intron (NM_001331030, intron 4 of 9)	6314	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
179085	chr4	168319601	168320200	+	0	NA	Intergenic	Intergenic	-1148	NM_017631	55601		NM_017631	ENSG00000137628	DDX60	-	DExD/H-box helicase 60	protein-coding
97628	chr17	44179471	44179830	+	0	NA	TTS (NM_080863)	TTS (NM_080863)	7067	NR_049730	339201		NM_178542	ENSG00000267080	ASB16-AS1	C17orf65	ASB16 antisense RNA 1	ncRNA
220419	chr8	100281921	100282180	+	0	NA	intron (NM_183419, intron 2 of 9)	LTR79|LTR|ERVL	20143	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
15048	chr1	148396221	148396480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6156	NR_168364	100132057		NR_033189	ENSG00000291232	PDE4DIPP6	-	PDE4DIP pseudogene 6	pseudo
14933	chr1	147587071	147587430	+	0	NA	intron (NM_004326, intron 1 of 9)	intron (NM_004326, intron 1 of 9)	45749	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
3019	chr1	12086421	12086680	+	0	NA	intron (NM_001243, intron 2 of 14)	(CCAC)n|Simple_repeat|Simple_repeat	23173	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
17368	chr1	156528121	156528880	+	0	NA	intron (NM_178229, intron 36 of 37)	intron (NM_178229, intron 36 of 37)	-27725	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
29303	chr10	69323201	69323800	+	0	NA	intron (NM_000188, intron 1 of 17)	AluJr|SINE|Alu	4653	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
65463	chr14	51779851	51780750	+	0	NA	Intergenic	Intergenic	63017	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
170893	chr3	193665351	193665680	+	0	NA	intron (NM_130832, intron 25 of 28)	L1ME4a|LINE|L1	-38183	NR_046634	100873941		NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA
64788	chr14	34843001	34843800	+	0	NA	intron (NM_013448, intron 3 of 26)	MLT1H2|LTR|ERVL-MaLR	-30791	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
224742	chr9	21802121	21804180	+	0	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	514	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
132240	chr2	102417551	102418800	+	0	NA	promoter-TSS (NM_003853)	promoter-TSS (NM_003853)	-615	NM_003853	8807		NM_003853	ENSG00000115607	IL18RAP	ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB	interleukin 18 receptor accessory protein	protein-coding
42742	chr11	72708901	72709100	+	0	NA	intron (NR_161388, intron 8 of 29)	AluSx|SINE|Alu	8526	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
218640	chr8	56992401	56993100	+	0	NA	intron (NM_017813, intron 1 of 4)	intron (NM_017813, intron 1 of 4)	1117	NM_017813	54928		NM_017813	ENSG00000104331	BPNT2	GPAPP|IMP 3|IMP-3|IMPA3|IMPAD1	3'(2'), 5'-bisphosphate nucleotidase 2	protein-coding
118146	chr19	35002251	35002430	+	0	NA	intron (NM_001320034, intron 1 of 18)	intron (NM_001320034, intron 1 of 18)	2017	NM_001136199	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
94358	chr17	28909671	28910030	+	0	NA	3' UTR (NM_001290131, exon 11 of 11)	3' UTR (NM_001290131, exon 11 of 11)	-6771	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
50285	chr12	46368351	46368930	+	0	NA	intron (NM_001307936, intron 3 of 14)	intron (NM_001307936, intron 3 of 14)	4133	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
72426	chr15	31475271	31475630	+	0	NA	TTS (NM_001382637).2	TTS (NM_001382637).2	148615	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
174097	chr4	35525221	35525780	+	0	NA	Intergenic	LTR1A1|LTR|ERV1	718439	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
190008	chr5	177476951	177477050	+	0	NA	Intergenic	Intergenic	-3366	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
48686	chr12	10582651	10583500	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	16760	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
28709	chr10	61751001	61751480	+	0	NA	intron (NM_173554, intron 4 of 6)	intron (NM_173554, intron 4 of 6)	88279	NM_173554	219621		NM_173554	ENSG00000183346	CABCOCO1	ARIEL|C10orf107	ciliary associated calcium binding coiled-coil 1	protein-coding
91882	chr17	7259121	7259580	+	0	NA	TTS (NM_001307)	TTS (NM_001307)	3128	NM_001307	1366		NM_001307	ENSG00000181885	CLDN7	CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1	claudin 7	protein-coding
114341	chr19	12164321	12164780	+	0	NA	intron (NM_001348013, intron 1 of 2)	AluSc8|SINE|Alu	1454	NM_003437	7695		NM_003437	ENSG00000196646	ZNF136	pHZ-20	zinc finger protein 136	protein-coding
134277	chr2	135792121	135792980	+	0	NA	intron (NM_002299, intron 14 of 16)	L1PBa|LINE|L1	-27641	NR_045486	100507600		NR_045486	ENSG00000226806	LCT-AS1	-	LCT antisense RNA 1	ncRNA
185448	chr5	131258001	131258980	+	0	NA	Intergenic	Intergenic	-5563	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
204279	chr7	2649901	2650300	+	0	NA	intron (NM_025250, intron 7 of 13)	intron (NM_025250, intron 7 of 13)	18114	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
32216	chr10	101802451	101802950	+	0	NA	intron (NM_012215, intron 7 of 15)	L2c|LINE|L2	15744	NM_012215	10724		NM_012215	ENSG00000198408	OGA	MEA5|MGEA5|NCOAT	O-GlcNAcase	protein-coding
26328	chr10	15142401	15142600	+	0	NA	intron (NM_004808, intron 1 of 11)	AluJb|SINE|Alu	12847	NR_036506	100192204		NR_036506	ENSG00000206448	PPIAP30	-	peptidylprolyl isomerase A pseudogene 30	pseudo
140426	chr2	233114371	233115400	+	0	NA	intron (NM_001017915, intron 2 of 26).2	AluSq2|SINE|Alu	54543	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
222415	chr8	134590601	134591080	+	0	NA	intron (NM_020863, intron 7 of 15)	(ACC)n|Simple_repeat|Simple_repeat	-7231	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
67134	chr14	68666021	68666580	+	0	NA	intron (NM_001321818, intron 10 of 10)	MLT1K|LTR|ERVL-MaLR	-37513	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
112521	chr19	6501851	6503430	+	0	NA	promoter-TSS (NM_006087)	promoter-TSS (NM_006087)	-56	NM_001289130	10382		NM_006087	ENSG00000104833	TUBB4A	DYT4|TUBB4|beta-5	tubulin beta 4A class IVa	protein-coding
2340	chr1	9231501	9232230	+	0	NA	Intergenic	Intergenic	-2909	NM_004285	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
202020	chr6	152863801	152864200	+	0	NA	Intergenic	Intergenic	113203	NM_194435	7432		NM_003381	ENSG00000146469	VIP	PHM27	vasoactive intestinal peptide	protein-coding
57221	chr12	121523521	121523780	+	0	NA	intron (NM_001005366, intron 8 of 22)	intron (NM_001005366, intron 8 of 22)	56596	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
81835	chr16	11577871	11578030	+	0	NA	intron (NR_024320, intron 1 of 3)	AluJo|SINE|Alu	8423	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
94196	chr17	28574471	28574980	+	0	NA	exon (NM_005165, exon 5 of 9)	exon (NM_005165, exon 5 of 9)	2170	NM_005165	230		NM_005165	ENSG00000109107	ALDOC	ALDC	aldolase, fructose-bisphosphate C	protein-coding
74299	chr15	58066121	58066800	+	0	NA	promoter-TSS (NM_003888)	promoter-TSS (NM_003888)	-537	NM_001206897	8854		NM_003888	ENSG00000128918	ALDH1A2	DIH4|RALDH(II)|RALDH2|RALDH2-T	aldehyde dehydrogenase 1 family member A2	protein-coding
222688	chr8	141267121	141267580	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	12783	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
82803	chr16	21468151	21468800	+	0	NA	intron (NR_027155, intron 10 of 28)	AluJr|SINE|Alu	-33051	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
80366	chr16	2523451	2524600	+	0	NA	intron (NM_001330449, intron 3 of 10)	intron (NM_001330449, intron 3 of 10)	3654	NM_001330449	51005		NM_015944	ENSG00000162066	AMDHD2	CGI-14	amidohydrolase domain containing 2	protein-coding
145546	chr20	44198801	44199400	+	0	NA	intron (NM_016470, intron 3 of 3)	MER44C|DNA|TcMar-Tigger	11671	NM_016470	51526		NM_016470	ENSG00000132823	OSER1	C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1	oxidative stress responsive serine rich 1	protein-coding
76020	chr15	72078901	72079200	+	0	NA	intron (NM_006901, intron 1 of 41)	L1MC2|LINE|L1	-35208	NM_001166340	123228		NM_145204	ENSG00000166192	SENP8	DEN1|NEDP1|PRSC2	SUMO peptidase family member, NEDD8 specific	protein-coding
132573	chr2	106494051	106494150	+	0	NA	intron (NM_001349727, intron 2 of 5)	intron (NM_001349727, intron 2 of 5)	6736	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
180528	chr5	14560021	14560680	+	0	NA	Intergenic	Intergenic	-21442	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
126361	chr2	27435401	27436030	+	0	NA	intron (NM_001321357, intron 8 of 18)	intron (NM_001321357, intron 8 of 18)	-6651	NM_001168364	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
218968	chr8	61678951	61679250	+	0	NA	intron (NM_001164756, intron 4 of 4)	intron (NM_001164756, intron 4 of 4)	10711	NM_020164	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
152427	chr22	20580701	20581980	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	73293	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
21886	chr1	207801651	207801750	+	0	NA	TTS (NR_029832)	TTS (NR_029832)	239	NR_029832	407026		NR_029832	ENSG00000284214	MIR29C	MIRN29C|miRNA29C|mir-29c	microRNA 29c	ncRNA
87979	chr16	80578221	80578480	+	0	NA	Intergenic	Intergenic	-5542	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
17924	chr1	160284321	160285580	+	0	NA	intron (NR_036493, intron 1 of 6)	intron (NR_036493, intron 1 of 6)	183	NM_002857	5824		NM_002857	ENSG00000162735	PEX19	D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1	peroxisomal biogenesis factor 19	protein-coding
196515	chr6	43733751	43734430	+	0	NA	Intergenic	Intergenic	-36119	NM_001171628	7422		NM_003376	ENSG00000112715	VEGFA	L-VEGF|MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
66864	chr14	65020051	65020300	+	0	NA	intron (NM_002028, intron 4 of 11)	intron (NM_002028, intron 4 of 11)	-24513	NR_039855	100616490		NR_039855	ENSG00000266531	MIR4706	mir-4706	microRNA 4706	ncRNA
182906	chr5	70402671	70403030	+	0	NA	intron (NR_027386, intron 3 of 5).2	L1PA16|LINE|L1	-12455	NM_001364570	2966		NM_001515	ENSG00000145736	GTF2H2	BTF2|BTF2 p44|BTF2P44|T-BTF2P44|TFIIH|p44	general transcription factor IIH subunit 2	protein-coding
125514	chr2	12725451	12725750	+	0	NA	intron (NM_021643, intron 2 of 2)	intron (NM_021643, intron 2 of 2)	8664	NR_027303	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
71624	chr14	106713521	106713830	+	0	NA	Intergenic	Intergenic	137324	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
109426	chr19	702421	702680	+	0	NA	Intergenic	Intergenic	-6385	NM_001040134	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
22311	chr1	213374371	213374550	+	0	NA	Intergenic	Intergenic	323219	NM_012424	26750		NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
153189	chr22	23845671	23846030	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-6844	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
86548	chr16	67187901	67188100	+	0	NA	intron (NM_178516, intron 4 of 13)	AluSz|SINE|Alu	2136	NM_178516	283849		NM_178516	ENSG00000179044	EXOC3L1	EXOC3L	exocyst complex component 3 like 1	protein-coding
178872	chr4	154742771	154742930	+	0	NA	intron (NM_001301645, intron 1 of 2)	CpG	-1150	NM_004744	9227		NM_004744	ENSG00000121207	LRAT	LCA14	lecithin retinol acyltransferase	protein-coding
237626	chrX	124014601	124015400	+	0	NA	intron (NM_001282418, intron 2 of 33)	AluY|SINE|Alu	53294	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
24192	chr1	235971601	235972600	+	0	NA	Intergenic	Intergenic	-88387	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
155829	chr22	39397771	39397930	+	0	NA	Intergenic	AluJb|SINE|Alu	-1930	NM_006116	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
2938	chr1	11812451	11812550	+	0	NA	intron (NM_001256959, intron 2 of 21)	MER21B|LTR|ERVL	6309	NM_001256959	1185		NM_001286	ENSG00000011021	CLCN6	CLC-6|CONRIBA	chloride voltage-gated channel 6	protein-coding
137120	chr2	191012301	191012500	+	0	NA	intron (NM_001384884, intron 2 of 24)	AluSx|SINE|Alu	1771	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
234074	chrX	8773121	8773400	+	0	NA	Intergenic	L1PA8|LINE|L1	28077	NM_001171186	171482		NM_174951	ENSG00000183304	FAM9A	TEX39A	family with sequence similarity 9 member A	protein-coding
182656	chr5	67204021	67204730	+	0	NA	Intergenic	Intergenic	-7576	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
105678	chr18	2643801	2644000	+	0	NA	Intergenic	L2a|LINE|L2	11495	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
203308	chr6	170103021	170103480	+	0	NA	Intergenic	Intergenic	-57392	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
229585	chr9	123360221	123360630	+	0	NA	intron (NM_173689, intron 1 of 12)	intron (NM_173689, intron 1 of 12)	4228	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
118179	chr19	35045571	35046230	+	0	NA	intron (NM_182983, intron 2 of 12)	intron (NM_182983, intron 2 of 12)	4179	NM_001384133	3249		NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
209474	chr7	76548851	76550400	+	0	NA	non-coding (NR_029411, exon 1 of 3)	non-coding (NR_029411, exon 1 of 3)	284	NR_029411	100133091		NR_029411	ENSG00000290873	LINC03009	-	long intergenic non-protein coding RNA 3009	ncRNA
127923	chr2	46363521	46363880	+	0	NA	intron (NM_001430, intron 6 of 15)	intron (NM_001430, intron 6 of 15)	30467	NR_146999	105374582		NR_146999	ENSG00000228100	LINC01820	-	long intergenic non-protein coding RNA 1820	ncRNA
31455	chr10	96089371	96090600	+	0	NA	non-coding (NR_038444, exon 1 of 6)	non-coding (NR_038444, exon 1 of 6)	250	NR_134320	728558		NR_038444	ENSG00000226688	ENTPD1-AS1	-	ENTPD1 antisense RNA 1	ncRNA
73687	chr15	44882721	44882980	+	0	NA	promoter-TSS (NR_146393)	promoter-TSS (NR_146393)	-231	NR_146393	653381		NR_146393	ENSG00000290387	SORD2P	SORD2	sorbitol dehydrogenase 2, pseudogene	pseudo
176707	chr4	101135601	101136230	+	0	NA	intron (NM_001130692, intron 2 of 11)	MIRb|SINE|MIR	104957	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
126867	chr2	31999621	31999880	+	0	NA	intron (NR_163995, intron 1 of 7)	L2a|LINE|L2	11014	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
65070	chr14	39419371	39419530	+	0	NA	intron (NM_203301, intron 1 of 3)	intron (NM_203301, intron 1 of 3)	13050	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
166309	chr3	112670071	112670230	+	0	NA	Intergenic	Intergenic	-29007	NM_199511	151887		NM_178274	ENSG00000091986	CCDC80	CL2|DRO1|LINC01279|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
2404	chr1	9558551	9558850	+	0	NA	intron (NM_032315, intron 2 of 6)	L2a|LINE|L2	19235	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
39721	chr11	61773851	61774280	+	0	NA	exon (NM_001127392, exon 8 of 27)	exon (NM_001127392, exon 8 of 27)	-16401	NR_026882	26070		NR_026882	ENSG00000124915	MYRF-AS1	DKFZP434K028	MYRF antisense RNA 1	ncRNA
131645	chr2	97590701	97591130	+	0	NA	promoter-TSS (NM_025190)	promoter-TSS (NM_025190)	-950	NM_025190	57730		NM_020970	ENSG00000196912	ANKRD36B	KIAA1641	ankyrin repeat domain 36B	protein-coding
138448	chr2	206162251	206162630	+	0	NA	TTS (NR_002589)	TTS (NR_002589)	212	NR_002590	619569		NR_002590	ENSG00000207406	SNORA41	ACA41|SNORA41A	small nucleolar RNA, H/ACA box 41	snoRNA
100455	chr17	61400701	61401350	+	0	NA	intron (NM_005994, intron 1 of 6)	CpG-11509	1182	NM_005994	6909		NM_005994	ENSG00000121068	TBX2	VETD	T-box transcription factor 2	protein-coding
134026	chr2	131045321	131045950	+	0	NA	intron (NM_001375902, intron 10 of 10)	intron (NM_001375902, intron 10 of 10)	47527	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
63676	chr14	21072821	21073380	+	0	NA	exon (NM_018071, exon 2 of 24)	exon (NM_018071, exon 2 of 24)	-2228	NM_001282211	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
46954	chr11	134449771	134449950	+	0	NA	intron (NR_033852, intron 1 of 5)	intron (NR_033852, intron 1 of 5)	13378	NR_033852	283177		NR_033852	ENSG00000255545	B3GAT1-DT	-	B3GAT1 divergent transcript	ncRNA
79170	chr16	290871	291230	+	0	NA	intron (NM_181050, intron 8 of 9)	intron (NM_181050, intron 8 of 9)	7886	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
137674	chr2	197458321	197458580	+	0	NA	intron (NM_001320820, intron 1 of 4)	L2a|LINE|L2	4686	NM_001320819	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
67515	chr14	70980671	70981190	+	0	NA	intron (NM_001308160, intron 6 of 33)	intron (NM_001308160, intron 6 of 33)	73471	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
144362	chr20	35079501	35081680	+	0	NA	intron (NM_199368, intron 1 of 18)	L1MB7|LINE|L1	12217	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
114847	chr19	13842001	13843530	+	0	NA	non-coding (NR_036515, exon 1 of 1)	non-coding (NR_036515, exon 1 of 1)	153	NR_036515	284454		NR_036515		MIR23AHG	Smyca	miR-23a/27a/24-2 cluster host gene	ncRNA
18469	chr1	161609601	161609800	+	0	NA	Intergenic	Intergenic	3641	NR_024151	3311		NR_024151	ENSG00000225217	HSPA7	HSP70B	heat shock protein family A (Hsp70) member 7 (pseudogene)	pseudo
58074	chr12	124553901	124554100	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	13612	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
129813	chr2	71548551	71548900	+	0	NA	intron (NM_001130981, intron 17 of 55)	intron (NM_001130981, intron 17 of 55)	82026	NM_001130987	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
208745	chr7	73518871	73519250	+	0	NA	intron (NM_001370402, intron 1 of 18)	intron (NM_001370402, intron 1 of 18)	3233	NM_001370402	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
2094	chr1	7963521	7964180	+	0	NA	intron (NM_007262, intron 2 of 6)	AluSg7|SINE|Alu	2139	NM_007262	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
167122	chr3	127679071	127679430	+	0	NA	intron (NM_172027, intron 10 of 11)	MIR|SINE|MIR	6298	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
195186	chr6	36033621	36034110	+	0	NA	intron (NM_139014, intron 1 of 10)	MIRc|SINE|MIR	6057	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
39883	chr11	62490971	62491130	+	0	NA	intron (NM_024060, intron 5 of 5)	AluSx1|SINE|Alu	54614	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
41218	chr11	65673321	65673580	+	0	NA	Intergenic	AluY|SINE|Alu	-10478	NM_001243985	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
175030	chr4	52713661	52714150	+	0	NA	TTS (NR_003016)	TTS (NR_003016)	656	NR_003016	677810		NR_003016	ENSG00000212588	SNORA26	HBI-6	small nucleolar RNA, H/ACA box 26	snoRNA
183314	chr5	76681351	76681850	+	0	NA	intron (NM_001285462, intron 16 of 23)	L1MB3|LINE|L1	-30803	NR_028375	100302746		NR_028375		NCRUPAR	NCRNA00193|ncR-uPAR	non-protein coding RNA, upstream of F2R/PAR1	ncRNA
137773	chr2	199458101	199459190	+	0	NA	promoter-TSS (NM_001172509)	promoter-TSS (NM_001172509)	-706	NR_134967	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
149455	chr21	31661471	31662030	+	0	NA	intron (NM_000454, intron 1 of 4)	intron (NM_000454, intron 1 of 4)	2057	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
1376	chr1	2527921	2528380	+	0	NA	TTS (NM_001010926).2	TTS (NM_001010926).2	-1554	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
72648	chr15	38498621	38499150	+	0	NA	exon (NM_001306086, exon 14 of 15)	exon (NM_001306086, exon 14 of 15)	44758	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
215256	chr7	156947571	156948000	+	0	NA	Intergenic	L2a|LINE|L2	-1927	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
95517	chr17	36542571	36542930	+	0	NA	Intergenic	Intergenic	-2169	NM_024835	79893		NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
193826	chr6	31479071	31479230	+	0	NA	TTS (NR_149132)	TTS (NR_149132)	7921	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
230758	chr9	128897251	128897550	+	0	NA	intron (NM_019594, intron 2 of 3)	AluSq|SINE|Alu	-14877	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
31937	chr10	100621551	100622380	+	0	NA	Intergenic	Intergenic	86022	NM_017902	55662		NM_017902	ENSG00000166135	HIF1AN	FIH1	hypoxia inducible factor 1 subunit alpha inhibitor	protein-coding
117721	chr19	29496751	29496850	+	0	NA	intron (NR_040029, intron 1 of 9)	intron (NR_040029, intron 1 of 9)	-28618	NM_001384641	342865		NM_001146339	ENSG00000187135	VSTM2B	-	V-set and transmembrane domain containing 2B	protein-coding
110349	chr19	1885001	1886230	+	0	NA	promoter-TSS (NM_031213)	promoter-TSS (NM_031213)	-119	NM_031213	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
200271	chr6	132673621	132674080	+	0	NA	Intergenic	L1PA16|LINE|L1	-14668	NM_138327	134864		NM_138327	ENSG00000146399	TAAR1	TA1|TAR1|TRAR1	trace amine associated receptor 1	protein-coding
194973	chr6	35339901	35340100	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-2558	NM_001171818	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
55542	chr12	105383171	105383600	+	0	NA	Intergenic	Intergenic	52694	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
168416	chr3	142435271	142435430	+	0	NA	intron (NM_019001, intron 1 of 41)	AluY|SINE|Alu	12687	NM_019001	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
30554	chr10	79707671	79708300	+	0	NA	intron (NM_001278495, intron 2 of 6)	intron (NM_001278495, intron 2 of 6)	4758	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
13420	chr1	114152301	114153100	+	0	NA	promoter-TSS (NM_205848)	promoter-TSS (NM_205848)	222	NM_001366223	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
114525	chr19	12828451	12828950	+	0	NA	exon (NM_001270440, exon 5 of 7)	exon (NM_001270440, exon 5 of 7)	1716	NM_001080997	83546		NM_031429	ENSG00000132026	RTBDN	-	retbindin	protein-coding
227322	chr9	89441451	89442200	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	38065	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
199261	chr6	111853451	111853550	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	19571	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
99314	chr17	49829321	49829800	+	0	NA	3' UTR (NM_007067, exon 15 of 15)	3' UTR (NM_007067, exon 15 of 15)	-16326	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
183087	chr5	74182551	74182850	+	0	NA	Intergenic	Intergenic	125625	NR_105009	102503429		NR_105009		LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
110043	chr19	1468151	1468350	+	0	NA	exon (NM_001351273, exon 14 of 14)	exon (NM_001351273, exon 14 of 14)	10965	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
126438	chr2	27960371	27960880	+	0	NA	intron (NM_199193, intron 4 of 13)	MIRc|SINE|MIR	-35742	NR_036230	100422965		NR_036230	ENSG00000265321	MIR4263	-	microRNA 4263	ncRNA
55054	chr12	96433501	96435080	+	0	NA	Intergenic	Intergenic	-33851	NM_001170464	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
161486	chr3	42505471	42506100	+	0	NA	intron (NM_001251883, intron 1 of 9)	MIR3|SINE|MIR	3142	NM_004624	7433		NM_004624	ENSG00000114812	VIPR1	HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R	vasoactive intestinal peptide receptor 1	protein-coding
30042	chr10	73807971	73808980	+	0	NA	non-coding (NR_160743, exon 3 of 15)	non-coding (NR_160743, exon 3 of 15)	3123	NM_001330107	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
6084	chr1	27237721	27237980	+	0	NA	intron (NM_015023, intron 1 of 15)	AluSc8|SINE|Alu	3218	NM_015023	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
97446	chr17	43655651	43656600	+	0	NA	intron (NM_004527, intron 1 of 2)	intron (NM_004527, intron 1 of 2)	5438	NM_013999	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
167297	chr3	128671551	128671650	+	0	NA	Intergenic	L1MC1|LINE|L1	-20782	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
224411	chr9	14992151	14992450	+	0	NA	Intergenic	HAL1|LINE|L1	-1027	NR_003920	389705		NR_003920		LOC389705	-	histone PARylation factor 1 pseudogene	pseudo
101141	chr17	65044001	65044330	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	11609	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
112870	chr19	7606771	7606930	+	0	NA	intron (NM_001080429, intron 5 of 18)	(CTGC)n|Simple_repeat|Simple_repeat	-10589	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
25209	chr10	5710771	5711180	+	0	NA	intron (NM_017782, intron 1 of 20)	intron (NM_017782, intron 1 of 20)	26137	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
21201	chr1	204000871	204001230	+	0	NA	Intergenic	MLT1A-int|LTR|ERVL-MaLR	40214	NR_027902	284573		NR_027902	ENSG00000176754	LINC00303	C1orf157|NCRNA00303	long intergenic non-protein coding RNA 303	ncRNA
96243	chr17	39818371	39819900	+	0	NA	intron (NM_001257408, intron 2 of 6)	intron (NM_001257408, intron 2 of 6)	-40910	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
112345	chr19	5936921	5937200	+	0	NA	intron (NM_003624, intron 5 of 16)	AluSz6|SINE|Alu	22806	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
84154	chr16	29749701	29750000	+	0	NA	Intergenic	AluSp|SINE|Alu	-3860	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
201991	chr6	152309421	152310930	+	0	NA	intron (NM_033071, intron 88 of 145)	AluSx|SINE|Alu	-70355	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
157656	chr22	46148151	46148550	+	0	NA	Intergenic	Intergenic	-2176	NM_005036	5465		NM_005036	ENSG00000186951	PPARA	NR1C1|PPAR|PPAR-alpha|PPARalpha|hPPAR	peroxisome proliferator activated receptor alpha	protein-coding
235859	chrX	50469501	50469700	+	0	NA	intron (NM_001013742, intron 1 of 27)	CpG	1225	NM_001013742	139189		NM_001013742	ENSG00000274588	DGKK	-	diacylglycerol kinase kappa	protein-coding
105857	chr18	3057851	3058720	+	0	NA	Intergenic	AluSz|SINE|Alu	-45141	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
69002	chr14	91492501	91492700	+	0	NA	intron (NR_158976, intron 2 of 16)	intron (NR_158976, intron 2 of 16)	17710	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
166003	chr3	108133801	108134150	+	0	NA	intron (NR_110028, intron 1 of 2)	intron (NR_110028, intron 1 of 2)	8154	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
189629	chr5	176035901	176036730	+	0	NA	Intergenic	REP522|Satellite|telo	25740	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
226109	chr9	62864451	62865280	+	0	NA	intron (NR_122076, intron 4 of 5)	LTR8|LTR|ERV1	24220	NR_135010	442421		NR_024496		PTGER4P2-CDK2AP2P2	-	PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene	pseudo
145579	chr20	44495801	44496350	+	0	NA	TTS (NM_198941)	TTS (NM_198941)	20201	NM_001261839	79183		NM_024331	ENSG00000124120	TTPAL	C20orf121	alpha tocopherol transfer protein like	protein-coding
224597	chr9	20361521	20362150	+	0	NA	intron (NM_001286691, intron 7 of 10)	intron (NM_001286691, intron 7 of 10)	49403	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
26098	chr10	13297421	13297900	+	0	NA	intron (NM_001037537, intron 1 of 7)	AluSz|SINE|Alu	2086	NM_001037537	5264		NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
44631	chr11	109182971	109183130	+	0	NA	Intergenic	L1HS|LINE|L1	-239140	NM_207645	399947		NM_207645	ENSG00000185742	C11orf87	LOH11CR1A|NEURIM1	chromosome 11 open reading frame 87	protein-coding
76365	chr15	74595651	74595950	+	0	NA	3' UTR (NM_001307939, exon 9 of 9)	3' UTR (NM_001307939, exon 9 of 9)	-12572	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
3980	chr1	18901271	18901430	+	0	NA	intron (NM_170726, intron 1 of 15)	intron (NM_170726, intron 1 of 15)	1205	NM_170726	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
210324	chr7	99492251	99492600	+	0	NA	TTS (NM_001345967)	TTS (NM_001345967)	7856	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
162242	chr3	47166151	47166450	+	0	NA	intron (NR_033373, intron 1 of 6)	intron (NR_033373, intron 1 of 6)	1930	NR_033373	285352		NR_033373		KIF9-AS1	-	KIF9 antisense RNA 1	ncRNA
175217	chr4	56821301	56822300	+	0	NA	promoter-TSS (NM_001271722)	promoter-TSS (NM_001271722)	-58	NM_001271721	6691		NM_021114	ENSG00000128040	SPINK2	HUSI-II|SPGF29	serine peptidase inhibitor Kazal type 2	protein-coding
157906	chr22	49766751	49766850	+	0	NA	Intergenic	AluJb|SINE|Alu	57531	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
102459	chr17	75710001	75711280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10819	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
82071	chr16	14070501	14072050	+	0	NA	promoter-TSS (NM_001365412)	promoter-TSS (NM_001365412)	-38	NM_014048	57496		NM_014048	ENSG00000186260	MRTFB	MKL2|MRTF-B|NPD001	myocardin related transcription factor B	protein-coding
209102	chr7	74885671	74886030	+	0	NA	intron (NR_040584, intron 3 of 7)	intron (NR_040584, intron 3 of 7)	4762	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
232457	chr9	136152751	136153050	+	0	NA	Intergenic	Intergenic	33880	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
34942	chr11	446851	447200	+	0	NA	Intergenic	Intergenic	-1243	NM_001329548	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
75102	chr15	64460271	64461930	+	0	NA	intron (NM_015042, intron 1 of 9)	intron (NM_015042, intron 1 of 9)	522	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
204246	chr7	2557201	2557650	+	0	NA	Intergenic	MIR|SINE|MIR	-1547	NM_001287501	23288		NM_152558	ENSG00000106012	IQCE	1700028P05Rik|PAPA7	IQ motif containing E	protein-coding
190464	chr5	180085401	180086330	+	0	NA	Intergenic	Intergenic	-14106	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
187427	chr5	142018071	142018980	+	0	NA	Intergenic	Intergenic	-5498	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
76390	chr15	74620871	74621800	+	0	NA	intron (NM_001130028, intron 3 of 12)	intron (NM_001130028, intron 3 of 12)	5499	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
31306	chr10	92604601	92605330	+	0	NA	intron (NM_004523, intron 1 of 21)	L2b|LINE|L2	11835	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
27442	chr10	31808551	31808880	+	0	NA	exon (NM_001270695, exon 18 of 19)	exon (NM_001270695, exon 18 of 19)	100211	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
50496	chr12	47802101	47802700	+	0	NA	intron (NR_160436, intron 1 of 25)	intron (NR_160436, intron 1 of 25)	17503	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
68050	chr14	75237471	75238180	+	0	NA	Intergenic	Intergenic	-41003	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
222293	chr8	133469501	133469700	+	0	NA	intron (NM_173344, intron 5 of 9)	MER113|DNA|hAT-Charlie	102287	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
163340	chr3	50417801	50418000	+	0	NA	intron (NM_006030, intron 3 of 37)	L2b|LINE|L2	52537	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
152969	chr22	23069551	23071200	+	0	NA	promoter-TSS (NM_002073)	promoter-TSS (NM_002073)	-144	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
80381	chr16	2536451	2536550	+	0	NA	Intergenic	Intergenic	-1521	NM_031268	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
84655	chr16	30737621	30738280	+	0	NA	exon (NM_006662, exon 34 of 34)	exon (NM_006662, exon 34 of 34)	-2692	NM_001256829	100862671		NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
171518	chr3	196642971	196644280	+	0	NA	intron (NM_198565, intron 1 of 2)	intron (NM_198565, intron 1 of 2)	3931	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
60497	chr13	41315421	41316300	+	0	NA	intron (NM_024561, intron 1 of 19)	AluJr|SINE|Alu	-3822	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
163875	chr3	52503671	52504200	+	0	NA	intron (NM_015136, intron 9 of 68)	intron (NM_015136, intron 9 of 68)	8597	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
53924	chr12	71685721	71687200	+	0	NA	5' UTR (NM_018279, exon 1 of 6)	5' UTR (NM_018279, exon 1 of 6)	378	NM_018279	55266		NM_018279	ENSG00000139291	TMEM19	-	transmembrane protein 19	protein-coding
6091	chr1	27276471	27276830	+	0	NA	intron (NM_015023, intron 3 of 15)	AluSc8|SINE|Alu	42018	NM_015023	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
128797	chr2	62313551	62314550	+	0	NA	Intergenic	Intergenic	98529	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
115555	chr19	15553171	15553330	+	0	NA	TTS (NM_173483)	TTS (NM_173483)	44725	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
3926	chr1	17434121	17435030	+	0	NA	intron (NM_018715, intron 2 of 12).2	MER21B|LTR|ERVL	3961	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
196501	chr6	43664951	43665550	+	0	NA	intron (NM_152732, intron 4 of 4)	intron (NM_152732, intron 4 of 4)	20214	NM_152732	221421		NM_152732	ENSG00000172426	RSPH9	C6orf206|CILD12|MRPS18AL1	radial spoke head component 9	protein-coding
92568	chr17	9020621	9021750	+	0	NA	promoter-TSS (NM_004822)	promoter-TSS (NM_004822)	-325	NM_004822	9423		NM_004822	ENSG00000065320	NTN1	MRMV4|NET1|NTN1L	netrin 1	protein-coding
1550	chr1	3480371	3480930	+	0	NA	3' UTR (NM_014448, exon 15 of 15)	3' UTR (NM_014448, exon 15 of 15)	25985	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
55445	chr12	104577071	104577230	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-14483	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
43579	chr11	83074001	83074230	+	0	NA	TTS (NR_038903)	TTS (NR_038903)	2049	NR_038903	100506233		NR_038903		RAB30-DT	RAB30-AS1	RAB30 divergent transcript	ncRNA
86083	chr16	57630501	57631430	+	0	NA	intron (NM_001145772, intron 1 of 14)	intron (NM_001145772, intron 1 of 14)	2335	NM_001370454	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
175503	chr4	73620271	73620500	+	0	NA	promoter-TSS (NM_001270391)	promoter-TSS (NM_001270391)	51	NM_001270391	166824		NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding
87325	chr16	70267551	70267880	+	0	NA	exon (NM_001605, exon 9 of 21)	exon (NM_001605, exon 9 of 21)	-15775	NM_058219	118460		NM_058219	ENSG00000223496	EXOSC6	EAP4|MTR3|Mtr3p|hMtr3p|p11	exosome component 6	protein-coding
149329	chr21	29047621	29048080	+	0	NA	intron (NM_006447, intron 14 of 17)	intron (NM_006447, intron 14 of 17)	23182	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
4010	chr1	18929301	18930280	+	0	NA	intron (NM_001136265, intron 1 of 8)	MIR3|SINE|MIR	26886	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
30235	chr10	75008951	75009280	+	0	NA	intron (NM_012330, intron 13 of 17).2	intron (NM_012330, intron 13 of 17).2	-12618	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
92739	chr17	14310851	14311500	+	0	NA	intron (NM_006041, intron 1 of 1)	AluJr4|SINE|Alu	7435	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
178588	chr4	151408631	151410180	+	0	NA	5' UTR (NM_001348694, exon 1 of 13)	5' UTR (NM_001348694, exon 1 of 13)	229	NM_001109977	729830		NM_001109977	ENSG00000164142	FHIP1A	FAM160A1|FHIP-L	FHF complex subunit HOOK interacting protein 1A	protein-coding
89258	chr16	88657171	88657800	+	0	NA	exon (NM_002461, exon 4 of 10)	exon (NM_002461, exon 4 of 10)	5606	NM_002461	4597		NM_002461	ENSG00000167508	MVD	FP17780|MDDase|MPD|POROK7	mevalonate diphosphate decarboxylase	protein-coding
186021	chr5	133996621	133997150	+	0	NA	intron (NM_003374, intron 1 of 8)	intron (NM_003374, intron 1 of 8)	7883	NR_036624								
63889	chr14	21848571	21849130	+	0	NA	Intergenic	L1MEf|LINE|L1	-177833	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
86276	chr16	58511751	58512930	+	0	NA	non-coding (NR_040072, exon 14 of 14)	non-coding (NR_040072, exon 14 of 14)	-3139	NM_024860	79918		NM_024860	ENSG00000103037	SETD6	-	SET domain containing 6, protein lysine methyltransferase	protein-coding
169116	chr3	155838251	155838550	+	0	NA	intron (NM_001363883, intron 1 of 3)	AluSx|SINE|Alu	16006	NM_001363883	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
48661	chr12	10441171	10441330	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	-5257	NM_002260	3822		NM_002260	ENSG00000205809	KLRC2	CD159c|NKG2-C|NKG2C	killer cell lectin like receptor C2	protein-coding
87473	chr16	71645551	71645730	+	0	NA	3' UTR (NM_001289003, exon 18 of 18)	3' UTR (NM_001289003, exon 18 of 18)	19456	NM_052858	91862		NM_052858	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
32398	chr10	102434421	102434800	+	0	NA	Intergenic	Intergenic	-1902	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B|mir-146b	microRNA 146b	ncRNA
6401	chr1	27958571	27958730	+	0	NA	exon (NM_014474, exon 8 of 8)	exon (NM_014474, exon 8 of 8)	-1323	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
193922	chr6	31639271	31639950	+	0	NA	exon (NM_001098534, exon 24 of 25).7	exon (NM_001098534, exon 24 of 25).7	5823	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
155074	chr22	37555821	37556230	+	0	NA	Intergenic	Intergenic	-4455	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
218725	chr8	58715501	58716200	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	-55997	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
34812	chr11	284151	284830	+	0	NA	exon (NM_001276700, exon 7 of 8)	exon (NM_001276700, exon 7 of 8)	-4636	NM_025092	80162		NM_025092	ENSG00000142102	PGGHG	ATHL1	protein-glucosylgalactosylhydroxylysine glucosidase	protein-coding
21400	chr1	205283871	205285300	+	0	NA	Intergenic	Intergenic	27388	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
33662	chr10	119836401	119837000	+	0	NA	intron (NM_024834, intron 13 of 15)	intron (NM_024834, intron 13 of 15)	17443	NM_001243194	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
75598	chr15	67100721	67101700	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	-24506	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
212454	chr7	128422941	128423830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-13403	NM_183243	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
21168	chr1	203764721	203766680	+	0	NA	intron (NM_017773, intron 1 of 4)	intron (NM_017773, intron 1 of 4)	517	NM_017773	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
208402	chr7	66696621	66697350	+	0	NA	intron (NM_001367745, intron 1 of 7)	intron (NM_001367745, intron 1 of 7)	14819	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
222401	chr8	134278121	134278980	+	0	NA	Intergenic	MIRb|SINE|MIR	-319521	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
121699	chr19	47574721	47575180	+	0	NA	Intergenic	L1MB8|LINE|L1	-1802	NM_001277075	84215		NM_032255	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
104827	chr17	81815601	81815800	+	0	NA	Intergenic	Intergenic	11550	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
234829	chrX	24242101	24242350	+	0	NA	Intergenic	Intergenic	71168	NM_001136233	170067		NM_001136233	ENSG00000223611	SUPT20HL2	FAM48B1|FAM48B2	SUPT20H like 2	protein-coding
27545	chr10	32335151	32335980	+	0	NA	intron (NR_168508, intron 1 of 12)	L2a|LINE|L2	11593	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
100329	chr17	59848651	59849480	+	0	NA	Intergenic	AluJb|SINE|Alu	7799	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
107741	chr18	50282701	50282950	+	0	NA	intron (NM_001101654, intron 14 of 14)	CpG	-1051	NM_001323954	4152		NM_002384	ENSG00000141644	MBD1	CXXC3|PCM1|RFT	methyl-CpG binding domain protein 1	protein-coding
230327	chr9	127977401	127978380	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	3099	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
143136	chr20	23889651	23890100	+	0	NA	Intergenic	Intergenic	-10127	NM_001900	1473		NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
13221	chr1	112663901	112664100	+	0	NA	intron (NM_006135, intron 7 of 9)	AluSc8|SINE|Alu	-10312	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
106151	chr18	9710971	9711130	+	0	NA	intron (NM_006868, intron 1 of 6)	intron (NM_006868, intron 1 of 6)	2749	NM_006868	11031		NM_006868	ENSG00000168461	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding
179037	chr4	165215251	165215650	+	0	NA	intron (NM_001161522, intron 1 of 13)	MamRTE1|LINE|RTE-BovB	5431	NM_001161522	11275		NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
21861	chr1	207546921	207547250	+	0	NA	intron (NM_000651, intron 15 of 46)	intron (NM_000651, intron 15 of 46)	50928	NM_000651	1378		NM_000573	ENSG00000203710	CR1	C3BR|C4BR|CD35|KN	complement C3b/C4b receptor 1 (Knops blood group)	protein-coding
25869	chr10	11249971	11250130	+	0	NA	intron (NM_001326330, intron 4 of 12)	intron (NM_001326330, intron 4 of 12)	85020	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
230243	chr9	127883671	127883830	+	0	NA	Intergenic	AluSg|SINE|Alu	-4129	NM_001318121	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
129286	chr2	68446671	68446830	+	0	NA	Intergenic	L1PA3|LINE|L1	20544	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
56700	chr12	120086871	120088330	+	0	NA	intron (NR_147894, intron 7 of 8)	intron (NR_147894, intron 7 of 8)	29153	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
117677	chr19	24091551	24092030	+	0	NA	intron (NM_001278678, intron 1 of 1)	AluSz|SINE|Alu	4603	NM_203282	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
161722	chr3	43995851	43996350	+	0	NA	Intergenic	CpG	-118112	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA
96794	chr17	41862801	41863680	+	0	NA	intron (NM_018143, intron 1 of 1)	AluSz|SINE|Alu	2183	NM_018143	55175		NM_018143	ENSG00000178502	KLHL11	-	kelch like family member 11	protein-coding
70755	chr14	103403921	103404550	+	0	NA	intron (NM_002376, intron 1 of 15)	Tigger16a|DNA|TcMar-Tigger	18820	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
150851	chr21	44067071	44068280	+	0	NA	intron (NM_003274, intron 7 of 22)	intron (NM_003274, intron 7 of 22)	-6649	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
104545	chr17	81297621	81297880	+	0	NA	Intergenic	AluSc5|SINE|Alu	-2443	NM_138570	124565		NM_138570	ENSG00000157637	SLC38A10	PP1744|SNAT10	solute carrier family 38 member 10	protein-coding
32156	chr10	101353601	101354800	+	0	NA	promoter-TSS (NM_003939)	promoter-TSS (NM_003939)	35	NM_003939	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
78084	chr15	90228951	90229350	+	0	NA	TTS (NM_006384)	TTS (NM_006384)	4791	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
65969	chr14	56340021	56340350	+	0	NA	Intergenic	Intergenic	-174146	NR_135241	101927690		NR_135241	ENSG00000258803	LOC101927690	-	uncharacterized LOC101927690	ncRNA
61961	chr13	79398051	79398480	+	0	NA	intron (NM_022118, intron 1 of 20)	intron (NM_022118, intron 1 of 20)	7956	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
8600	chr1	41526421	41526680	+	0	NA	intron (NM_001127714, intron 4 of 7)	(CACCCT)n|Simple_repeat|Simple_repeat	-41867	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
155938	chr22	39666571	39667330	+	0	NA	intron (NM_001003406, intron 22 of 35)	intron (NM_001003406, intron 22 of 35)	96197	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
31552	chr10	97179951	97180050	+	0	NA	intron (NR_037909, intron 11 of 14)	intron (NR_037909, intron 11 of 14)	5959	NM_003061	6585		NM_003061	ENSG00000187122	SLIT1	MEGF4|SLIL1|SLIT-1|SLIT3	slit guidance ligand 1	protein-coding
15583	chr1	150574541	150575950	+	0	NA	promoter-TSS (NR_104133)	promoter-TSS (NR_104133)	-693	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
53368	chr12	64667571	64668900	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-45630	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
40183	chr11	62902371	62902630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	18863	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
139148	chr2	219059651	219060150	+	0	NA	intron (NM_002181, intron 1 of 2)	intron (NM_002181, intron 1 of 2)	1021	NM_002181	3549		NM_002181	ENSG00000163501	IHH	BDA1|HHG2	Indian hedgehog signaling molecule	protein-coding
67412	chr14	69812771	69812930	+	0	NA	intron (NR_149012, intron 1 of 1)	HERVK3-int|LTR|ERVK	1090	NR_149012	100506358		NR_149012		LOC100506358	-	uncharacterized LOC100506358	ncRNA
125161	chr2	10034821	10035450	+	0	NA	Intergenic	MIRb|SINE|MIR	8266	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
230570	chr9	128511801	128512400	+	0	NA	intron (NM_001499, intron 2 of 13)	AluSq2|SINE|Alu	7381	NM_001003722	2733		NM_001499	ENSG00000119392	GLE1	CAAHC|CAAHD|GLE1L|LCCS|LCCS1|hGLE1	GLE1 RNA export mediator	protein-coding
102325	chr17	75399971	75400330	+	0	NA	intron (NM_203506, intron 1 of 4)	AluJb|SINE|Alu	5528	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
14439	chr1	144396771	144397330	+	0	NA	Intergenic	Intergenic	-15526	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
184662	chr5	107670921	107671650	+	0	NA	promoter-TSS (NM_001962)	promoter-TSS (NM_001962)	-348	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
123990	chr19	55444701	55445250	+	0	NA	Intergenic	L2a|LINE|L2	-2112	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
140850	chr2	237291051	237291630	+	0	NA	Intergenic	Intergenic	122824	NM_057166	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
111121	chr19	3226201	3226750	+	0	NA	intron (NR_033342, intron 1 of 12)	(CA)n|Simple_repeat|Simple_repeat	1197	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
169733	chr3	172448971	172449130	+	0	NA	promoter-TSS (NM_198407)	promoter-TSS (NM_198407)	-594	NM_198407	2693		NM_004122	ENSG00000121853	GHSR	GHDP|GHS-R1a|GHSR-1a	growth hormone secretagogue receptor	protein-coding
52692	chr12	56494801	56495000	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-6486	NM_001280798	27165		NM_013267	ENSG00000135423	GLS2	GA|GLS|LGA|hLGA	glutaminase 2	protein-coding
135056	chr2	156399651	156401600	+	0	NA	Intergenic	Intergenic	-34927	NM_001083112	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
143614	chr20	31720501	31721230	+	0	NA	promoter-TSS (NR_131907)	promoter-TSS (NR_131907)	-642	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
31044	chr10	88901521	88902350	+	0	NA	intron (NM_020799, intron 2 of 10)	intron (NM_020799, intron 2 of 10)	21690	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
131173	chr2	92043371	92043850	+	0	NA	Intergenic	CpG	102477	NR_027714	440888		NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
166530	chr3	114718271	114718430	+	0	NA	intron (NM_001348801, intron 4 of 11)	intron (NM_001348801, intron 4 of 11)	25175	NR_039959	100616166		NR_039959	ENSG00000264623	MIR4796	mir-4796	microRNA 4796	ncRNA
119479	chr19	40443901	40445500	+	0	NA	promoter-TSS (NM_203344)	promoter-TSS (NM_203344)	-365	NM_203344	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
208174	chr7	64689171	64689330	+	0	NA	intron (NM_001013746, intron 2 of 4)	intron (NM_001013746, intron 2 of 4)	10186	NR_106898	102465505		NR_106898	ENSG00000275667	MIR6839	hsa-mir-6839	microRNA 6839	ncRNA
100023	chr17	57979251	57979350	+	0	NA	exon (NM_007146, exon 5 of 6)	exon (NM_007146, exon 5 of 6)	8954	NM_001330393	7716		NM_007146	ENSG00000136451	VEZF1	CMD1OO|DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
193044	chr6	28543881	28544380	+	0	NA	Intergenic	Intergenic	15799	NR_144470	2880		NM_001509	ENSG00000224586	GPX5	EGLP|GPx-5|GSHPx-5|HEL-S-75p	glutathione peroxidase 5	protein-coding
178949	chr4	159102421	159103500	+	0	NA	Intergenic	CpG	-1091	NM_001351724	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
157802	chr22	46792901	46793180	+	0	NA	intron (NM_001284304, intron 3 of 13)	intron (NM_001284304, intron 3 of 13)	19113	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
200344	chr6	133968571	133968730	+	0	NA	intron (NM_004865, intron 1 of 6)	intron (NM_004865, intron 1 of 6)	15426	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
150965	chr21	44319821	44320080	+	0	NA	intron (NM_001002021, intron 14 of 24)	CpG	18388	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
40728	chr11	64812951	64813050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1706	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
141032	chr2	238198151	238198450	+	0	NA	intron (NM_030768, intron 1 of 11)	AluJr|SINE|Alu	5395	NM_030768	80895		NM_030768	ENSG00000132323	ILKAP	ILKAP2|ILKAP3|PP2C-DELTA|PP2CD|PPM1O	ILK associated serine/threonine phosphatase	protein-coding
41026	chr11	65441851	65442250	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	-2408	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
179210	chr4	173492401	173492600	+	0	NA	intron (NM_001329597, intron 1 of 3)	intron (NM_001329597, intron 1 of 3)	26644	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
123646	chr19	54696051	54696350	+	0	NA	Intergenic	Intergenic	-11716	NR_003061	79166		NM_024317	ENSG00000293273	LILRP2	CD85m|ILT10|LILRA5	leukocyte immunoglobulin-like receptor pseudogene 2	pseudo
23989	chr1	235226521	235227030	+	0	NA	intron (NM_016374, intron 11 of 23)	AluY|SINE|Alu	-36659	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
53677	chr12	68448351	68449250	+	0	NA	intron (NR_120458, intron 1 of 3)	MER107|DNA|hAT-Charlie	2684	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
36640	chr11	7665651	7666050	+	0	NA	non-coding (NR_126508, exon 9 of 10)	non-coding (NR_126508, exon 9 of 10)	7041	NM_001302827	51700		NM_016229	ENSG00000166394	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
223140	chr8	143505021	143505480	+	0	NA	TTS (NR_145785)	TTS (NR_145785)	998	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
136655	chr2	180124301	180124730	+	0	NA	Intergenic	Intergenic	-117218	NM_020943	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
148155	chr20	63516371	63516980	+	0	NA	Intergenic	AluY|SINE|Alu	-4066	NR_148427	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
180153	chr5	1381501	1381780	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1567	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
229316	chr9	120882851	120883550	+	0	NA	intron (NM_001286840, intron 1 of 14)	intron (NM_001286840, intron 1 of 14)	-6012	NM_015651	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
113463	chr19	9912521	9912780	+	0	NA	intron (NM_058164, intron 1 of 5)	intron (NM_058164, intron 1 of 5)	1151	NM_001304347	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
77853	chr15	88664101	88664630	+	0	NA	Intergenic	L1M1|LINE|L1	25349	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
59180	chr13	22025501	22025950	+	0	NA	Intergenic	L1ME2|LINE|L1	-147565	NR_047040	100874182		NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
109850	chr19	1218251	1218550	+	0	NA	intron (NM_000455, intron 1 of 9)	intron (NM_000455, intron 1 of 9)	12622	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
143713	chr20	32251271	32251630	+	0	NA	Intergenic	AluJr|SINE|Alu	13655	NR_031726	100302183		NR_031726	ENSG00000284125	MIR1825	MIRN1825|hsa-mir-1825	microRNA 1825	ncRNA
169634	chr3	171311871	171312380	+	0	NA	intron (NM_001161560, intron 2 of 31)	(A)n|Simple_repeat|Simple_repeat	148280	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
79710	chr16	1311821	1312730	+	0	NA	intron (NM_003345, intron 1 of 6)	intron (NM_003345, intron 1 of 6)	2639	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
2081	chr1	7942121	7943680	+	0	NA	Intergenic	MIRb|SINE|MIR	-2061	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
214226	chr7	148851601	148851800	+	0	NA	intron (NM_001203248, intron 1 of 19)	AluJb|SINE|Alu	31785	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
149023	chr21	14560671	14560830	+	0	NA	intron (NM_001256370, intron 2 of 8)	intron (NM_001256370, intron 2 of 8)	-14390	NM_001286523	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
136905	chr2	189601171	189601350	+	0	NA	Intergenic	Intergenic	-20474	NM_014585	30061		NM_014585	ENSG00000138449	SLC40A1	FPN|FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3	solute carrier family 40 member 1	protein-coding
134844	chr2	148655521	148657030	+	0	NA	intron (NM_015630, intron 1 of 13)	intron (NM_015630, intron 1 of 13)	11524	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
23238	chr1	227775451	227775550	+	0	NA	intron (NR_136655, intron 5 of 5)	intron (NR_136655, intron 5 of 5)	-11312	NR_168381	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
190222	chr5	178237671	178238300	+	0	NA	3' UTR (NM_173465, exon 29 of 29)	3' UTR (NM_173465, exon 29 of 29)	-5163	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
95637	chr17	37771151	37771250	+	0	NA	Intergenic	Intergenic	-26141	NM_000458	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
32028	chr10	101018021	101018380	+	0	NA	exon (NM_001195263, exon 9 of 17)	exon (NM_001195263, exon 9 of 17)	12929	NM_001195263	79955		NM_024895	ENSG00000186862	PDZD7	DFNB57|PDZK7	PDZ domain containing 7	protein-coding
136532	chr2	177264401	177266750	+	0	NA	promoter-TSS (NM_006164)	promoter-TSS (NM_006164)	-444	NM_001313902	4780		NM_006164	ENSG00000116044	NFE2L2	HEBP1|IMDDHH|NRF2|Nrf-2	NFE2 like bZIP transcription factor 2	protein-coding
71125	chr14	104966951	104967250	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	3407	NM_001350929	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
142356	chr20	3765471	3765630	+	0	NA	intron (NR_047675, intron 1 of 5)	intron (NR_047675, intron 1 of 5)	2203	NM_001258430	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
66204	chr14	61282971	61283330	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1812	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
229537	chr9	122849551	122850330	+	0	NA	intron (NM_001354478, intron 20 of 20)	intron (NM_001354478, intron 20 of 20)	-21352	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
114274	chr19	11580121	11580380	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1275	NM_001111035	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
218892	chr8	60658421	60659080	+	0	NA	Intergenic	Intergenic	-19990	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
25520	chr10	7300471	7300650	+	0	NA	intron (NM_001029880, intron 4 of 20)	intron (NM_001029880, intron 4 of 20)	108781	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
196386	chr6	43270921	43271450	+	0	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	-27075	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
28651	chr10	59885351	59885850	+	0	NA	intron (NM_005436, intron 1 of 8)	L2c|LINE|L2	20956	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
5245	chr1	25016501	25016700	+	0	NA	Intergenic	Intergenic	-6903	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
233943	chrX	2503901	2504100	+	0	NA	Intergenic	Intergenic	-3024	NM_145177	207063		NM_145177	ENSG00000169084	DHRSX	CXorf11|DHRS5X|DHRS5Y|DHRSXY|DHRSY|SDR46C1|SDR7C6	dehydrogenase/reductase X-linked	protein-coding
187969	chr5	149430971	149431430	+	0	NA	TTS (NR_029686)	TTS (NR_029686)	554	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
188056	chr5	149999301	149999500	+	0	NA	intron (NM_030953, intron 1 of 1)	L2|LINE|L2	1254	NM_001243253	81789		NM_030953	ENSG00000164296	TIGD6	-	tigger transposable element derived 6	protein-coding
184916	chr5	112918571	112918950	+	0	NA	intron (NM_005669, intron 2 of 4)	L2|LINE|L2	3467	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
131720	chr2	97993921	97994300	+	0	NA	intron (NM_015348, intron 1 of 40)	intron (NM_015348, intron 1 of 40)	1838	NM_015348	23505		NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
133193	chr2	113015851	113015950	+	0	NA	Intergenic	Intergenic	10441	NM_014440	27179		NM_014440	ENSG00000136694	IL36A	FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6	interleukin 36 alpha	protein-coding
150357	chr21	42189951	42190530	+	0	NA	Intergenic	Intergenic	-9449	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
84722	chr16	30903851	30904900	+	0	NA	TTS (NM_001330)	TTS (NM_001330)	7761	NM_001142544	1489		NM_001330	ENSG00000150281	CTF1	CT-1|CT1	cardiotrophin 1	protein-coding
214077	chr7	143406451	143408200	+	0	NA	promoter-TSS (NR_033897)	promoter-TSS (NR_033897)	-488	NR_033897	285965		NR_033897	ENSG00000229153	EPHA1-AS1	-	EPHA1 antisense RNA 1	ncRNA
57420	chr12	121841451	121841750	+	0	NA	intron (NM_002150, intron 12 of 13)	L1MB7|LINE|L1	17259	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
99553	chr17	50382751	50383050	+	0	NA	3' UTR (NM_018509, exon 7 of 7)	3' UTR (NM_018509, exon 7 of 7)	9671	NM_152463	146956		NM_152463	ENSG00000154920	EME1	MMS4L|SLX2A	essential meiotic structure-specific endonuclease 1	protein-coding
36011	chr11	2900451	2900800	+	0	NA	intron (NM_183233, intron 1 of 10)	AluY|SINE|Alu	934	NM_183233	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
87060	chr16	68353521	68353780	+	0	NA	intron (NR_165372, intron 16 of 19)	intron (NR_165372, intron 16 of 19)	42536	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
70275	chr14	101730371	101730530	+	0	NA	promoter-TSS (NR_026774)	promoter-TSS (NR_026774)	13	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
41158	chr11	65604471	65604830	+	0	NA	intron (NM_002419, intron 8 of 9)	MIR|SINE|MIR	-8850	NM_033348	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
24508	chr1	244461171	244461950	+	0	NA	intron (NM_001242340, intron 1 of 18)	CpG	189	NM_001242340	257044		NM_173807	ENSG00000179397	CATSPERE	C10orf101|C1orf101	catsper channel auxiliary subunit epsilon	protein-coding
221018	chr8	116471651	116471950	+	0	NA	Intergenic	Intergenic	-146741	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
30313	chr10	75399721	75400330	+	0	NA	exon (NM_032772, exon 2 of 2)	exon (NM_032772, exon 2 of 2)	-1503	NR_024421	100131213		NR_024421	ENSG00000237149	ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	ncRNA
67635	chr14	73056021	73056830	+	0	NA	Intergenic	Intergenic	-2109	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
121970	chr19	48486471	48487050	+	0	NA	intron (NM_001080434, intron 15 of 15)	AluY|SINE|Alu	17391	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
193450	chr6	30495921	30497130	+	0	NA	Intergenic	Intergenic	7016	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
108126	chr18	62339621	62340080	+	0	NA	intron (NM_001270950, intron 1 of 7)	intron (NM_001270950, intron 1 of 7)	14540	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
197095	chr6	57021021	57021430	+	0	NA	intron (NM_152731, intron 6 of 6)	intron (NM_152731, intron 6 of 6)	-25307	NM_001286274	57691		NM_020931	ENSG00000168116	KIAA1586	-	KIAA1586	protein-coding
87095	chr16	68522021	68522450	+	0	NA	Intergenic	Intergenic	-16978	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
208620	chr7	72965271	72966100	+	0	NA	intron (NM_198924, intron 2 of 4)	intron (NM_198924, intron 2 of 4)	1268	NM_001317815	378108		NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
165109	chr3	71582131	71583200	+	0	NA	intron (NM_001012505, intron 1 of 6)	CpG-20015	1063	NM_001349338	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
224405	chr9	14674601	14674800	+	0	NA	intron (NM_178566, intron 3 of 9)	L1ME3|LINE|L1	18732	NR_148714	340481		NM_178566	ENSG00000175893	ZDHHC21	DHHC-21|DHHC21|DNZ1|HSPC097	zinc finger DHHC-type palmitoyltransferase 21	protein-coding
85340	chr16	50160271	50161150	+	0	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	7404	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
225003	chr9	33121951	33122050	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	13308	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
82263	chr16	15143971	15144230	+	0	NA	Intergenic	Intergenic	-7141	NR_123721	105369154		NR_123721	ENSG00000270580	PKD1P6-NPIPP1	-	PKD1P6-NPIPP1 readthrough	pseudo
1142	chr1	2160421	2161480	+	0	NA	intron (NR_146911, intron 7 of 15)	intron (NR_146911, intron 7 of 15)	22925	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
41851	chr11	67156351	67157150	+	0	NA	intron (NM_012308, intron 2 of 20)	AluSc5|SINE|Alu	37487	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
154859	chr22	37125151	37125780	+	0	NA	TTS (NM_001346223)	TTS (NM_001346223)	-15752	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
45859	chr11	119584201	119584400	+	0	NA	Intergenic	Intergenic	144900	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
228088	chr9	96415751	96416280	+	0	NA	intron (NM_153695, intron 1 of 4)	AluJr4|SINE|Alu	2355	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
41396	chr11	66010901	66011100	+	0	NA	Intergenic	AluSz|SINE|Alu	-1008	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
183035	chr5	73232301	73232980	+	0	NA	Intergenic	Intergenic	-30679	NR_134291	340090		NR_134291	ENSG00000287090	LOC340090	-	uncharacterized LOC340090	ncRNA
62341	chr13	99119721	99120180	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	33227	NR_047482	100861541		NR_047482		DOCK9-DT	DOCK9-AS2	DOCK9 divergent transcript	ncRNA
153265	chr22	24136071	24136230	+	0	NA	intron (NM_012295, intron 29 of 36)	L1ME4b|LINE|L1	-45337	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
104321	chr17	80945851	80946150	+	0	NA	intron (NM_020761, intron 26 of 33)	intron (NM_020761, intron 26 of 33)	25213	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
191409	chr6	8775971	8776300	+	0	NA	intron (NR_038980, intron 3 of 4)	L1PA2|LINE|L1	123926	NR_004855	728655		NR_004855		HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
88007	chr16	80974701	80975180	+	0	NA	non-coding (NR_147840, exon 4 of 4)	non-coding (NR_147840, exon 4 of 4)	22736	NM_001351973	56942		NM_020188	ENSG00000103121	CMC2	2310061C15Rik|C16orf61|DC13	C-X9-C motif containing 2	protein-coding
48879	chr12	12477771	12478130	+	0	NA	exon (NM_030640, exon 7 of 7)	exon (NM_030640, exon 7 of 7)	84913	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
90884	chr17	2386701	2387230	+	0	NA	exon (NM_020310, exon 6 of 6)	exon (NM_020310, exon 6 of 6)	14095	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
11760	chr1	92318951	92319280	+	0	NA	intron (NM_024813, intron 6 of 12)	intron (NM_024813, intron 6 of 12)	20056	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
4989	chr1	24319001	24320050	+	0	NA	5' UTR (NM_001195010, exon 1 of 16)	5' UTR (NM_001195010, exon 1 of 16)	168	NM_001195010	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
126617	chr2	28796821	28797480	+	0	NA	intron (NM_206876, intron 8 of 8)	L1PA16|LINE|L1	-13684	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
129764	chr2	71043201	71044600	+	0	NA	Intergenic	SATR1|Satellite|Satellite	19825	NR_002185	79315		NR_002185	ENSG00000290930	OR7E91P	-	olfactory receptor family 7 subfamily E member 91 pseudogene	pseudo
225309	chr9	34587101	34588100	+	0	NA	intron (NM_001207011, intron 1 of 9)	intron (NM_001207011, intron 1 of 9)	2124	NM_147164	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
210873	chr7	101143871	101144650	+	0	NA	Intergenic	Intergenic	-10216	NM_001283	1174		NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A	adaptor related protein complex 1 subunit sigma 1	protein-coding
123679	chr19	55004301	55005030	+	0	NA	Intergenic	Intergenic	33599	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
5776	chr1	26525271	26525430	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4411	NM_002953	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
89941	chr16	89740151	89740630	+	0	NA	TTS (NR_110128)	TTS (NR_110128)	18853	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
140782	chr2	235666151	235666850	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	-148579	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
18963	chr1	168578101	168578300	+	0	NA	intron (NM_002995, intron 1 of 2)	intron (NM_002995, intron 1 of 2)	1595	NM_002995	6375		NM_002995	ENSG00000143184	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	X-C motif chemokine ligand 1	protein-coding
230821	chr9	129039571	129039730	+	0	NA	intron (NM_032809, intron 1 of 15)	AluSx|SINE|Alu	2716	NM_032809	84895		NM_032809	ENSG00000148343	MIGA2	C9orf54|FAM73B	mitoguardin 2	protein-coding
107412	chr18	46176151	46177300	+	0	NA	intron (NM_145055, intron 1 of 4)	AluSp|SINE|Alu	2691	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
44511	chr11	107457121	107458380	+	0	NA	promoter-TSS (NM_152434)	promoter-TSS (NM_152434)	96	NM_152434	143884		NM_152434	ENSG00000152404	CWF19L2	-	CWF19 like cell cycle control factor 2	protein-coding
133342	chr2	113916371	113917100	+	0	NA	intron (NR_102318, intron 2 of 10)	intron (NR_102318, intron 2 of 10)	-25743	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128542	chr2	60819311	60820600	+	0	NA	Intergenic	AluJb|SINE|Alu	61359	NR_033980	400957		NR_033980	ENSG00000228414	REL-DT	LINC01185	REL divergent transcript	ncRNA
102541	chr17	75829951	75830780	+	0	NA	exon (NM_199242, exon 29 of 32)	exon (NM_199242, exon 29 of 32)	14039	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
212040	chr7	114941871	114942880	+	0	NA	exon (NM_001166345, exon 3 of 5)	exon (NM_001166345, exon 3 of 5)	20221	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
68589	chr14	89468121	89468680	+	0	NA	intron (NM_001085471, intron 1 of 6)	AluSx1|SINE|Alu	51046	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
117858	chr19	32377171	32377330	+	0	NA	intron (NM_014910, intron 4 of 5)	LTR13|LTR|ERVK	28289	NR_046201	400684		NR_046201	ENSG00000267213	DPY19L3-DT	-	DPY19L3 divergent transcript	ncRNA
179804	chr5	397501	399080	+	0	NA	intron (NR_165159, intron 6 of 13)	intron (NR_165159, intron 6 of 13)	44870	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
11795	chr1	92544751	92544850	+	0	NA	intron (NM_001377213, intron 20 of 20)	intron (NM_001377213, intron 20 of 20)	-57875	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
40830	chr11	64990071	64990430	+	0	NA	promoter-TSS (NM_001300808)	promoter-TSS (NM_001300808)	27	NM_001300807	116071		NM_138456	ENSG00000168062	BATF2	SARI	basic leucine zipper ATF-like transcription factor 2	protein-coding
119446	chr19	40406371	40407500	+	0	NA	intron (NM_020956, intron 4 of 5)	AluSz|SINE|Alu	6429	NM_020956	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
83105	chr16	22463451	22463750	+	0	NA	intron (NR_027154, intron 6 of 28)	intron (NR_027154, intron 6 of 28)	-25885	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
115632	chr19	16097151	16098280	+	0	NA	TTS (NM_001367837)	TTS (NM_001367837)	-14174	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
178976	chr4	163152801	163153180	+	0	NA	intron (NM_138386, intron 2 of 7)	LTR12C|LTR|ERV1	13900	NM_001128931	92345		NM_138386	ENSG00000145414	NAF1	PFBMFT7	nuclear assembly factor 1 ribonucleoprotein	protein-coding
70622	chr14	102807351	102808650	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	30521	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
84214	chr16	29901401	29901600	+	0	NA	exon (NM_181718, exon 1 of 3)	exon (NM_181718, exon 1 of 3)	1012	NM_181718	253982		NM_181718	ENSG00000174939	ASPHD1	-	aspartate beta-hydroxylase domain containing 1	protein-coding
25671	chr10	8401221	8401680	+	0	NA	Intergenic	Intergenic	-133145	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
21679	chr1	206711171	206711330	+	0	NA	intron (NM_032960, intron 1 of 9)	AluSz6|SINE|Alu	26345	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
51987	chr12	53958071	53958530	+	0	NA	3' UTR (NM_173860, exon 2 of 2)	3' UTR (NM_173860, exon 2 of 2)	3397	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
126789	chr2	30287921	30288300	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	56576	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
120290	chr19	43460701	43461550	+	0	NA	3' UTR (NM_014400, exon 5 of 5)	3' UTR (NM_014400, exon 5 of 5)	4483	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
174108	chr4	36192701	36193250	+	0	NA	intron (NR_146894, intron 7 of 32)	AluSz|SINE|Alu	50964	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
190197	chr5	178211151	178211830	+	0	NA	TTS (NM_004499)	TTS (NM_004499)	6957	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
83498	chr16	27426221	27427380	+	0	NA	promoter-TSS (NM_021798)	promoter-TSS (NM_021798)	-471	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
86756	chr16	67656101	67656330	+	0	NA	intron (NM_001317026, intron 34 of 37)	intron (NM_001317026, intron 34 of 37)	4045	NM_001082486	65057		NM_022914	ENSG00000102977	ACD	PIP1|PTOP|TINT1|TPP1	ACD shelterin complex subunit and telomerase recruitment factor	protein-coding
182802	chr5	68884151	68884930	+	0	NA	Intergenic	L3|LINE|CR1	145387	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
59833	chr13	30455001	30455600	+	0	NA	Intergenic	Intergenic	9027	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
109782	chr19	1142751	1142850	+	0	NA	intron (NM_014963, intron 4 of 31)	AluSx1|SINE|Alu	-10579	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
89778	chr16	89473821	89474550	+	0	NA	intron (NM_001256182, intron 1 of 13)	MLT1E1A|LTR|ERVL-MaLR	16376	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
129663	chr2	70257351	70258980	+	0	NA	promoter-TSS (NM_016297)	promoter-TSS (NM_016297)	28	NM_016297	51449		NM_016297	ENSG00000116005	PCYOX1	PCL1	prenylcysteine oxidase 1	protein-coding
161895	chr3	45962101	45962930	+	0	NA	intron (NM_024513, intron 10 of 17)	intron (NM_024513, intron 10 of 17)	19051	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
12408	chr1	101319621	101319750	+	0	NA	Intergenic	AluSx|SINE|Alu	-4152	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
9546	chr1	51517651	51518400	+	0	NA	intron (NM_001981, intron 1 of 24)	intron (NM_001981, intron 1 of 24)	1241	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
136113	chr2	173938751	173939100	+	0	NA	intron (NM_001172712, intron 4 of 6)	MER20|DNA|hAT-Charlie	24955	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
214099	chr7	143737051	143737580	+	0	NA	intron (NM_001363538, intron 2 of 11)	intron (NM_001363538, intron 2 of 11)	20381	NM_178561	340307		NM_178561	ENSG00000271321	CTAGE6	CTAGE6P	CTAGE family member 6	protein-coding
148613	chr21	5162971	5163330	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-8492	NM_001368238	102724159		NM_001368238	ENSG00000275464	LOC102724159	-	periodic tryptophan protein 2 homolog	protein-coding
198043	chr6	90184371	90185130	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	112093	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
12160	chr1	100299771	100299930	+	0	NA	Intergenic	Intergenic	18609	NR_030279	693138		NR_030279	ENSG00000207750	MIR553	MIRN553|hsa-mir-553	microRNA 553	ncRNA
203173	chr6	167112651	167113150	+	0	NA	intron (NM_004367, intron 1 of 2)	intron (NM_004367, intron 1 of 2)	1093	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
112481	chr19	6416851	6417230	+	0	NA	promoter-TSS (NR_037505)	promoter-TSS (NR_037505)	-529	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
180488	chr5	14142651	14143930	+	0	NA	promoter-TSS (NM_007118)	promoter-TSS (NM_007118)	-52	NM_007118	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
18072	chr1	160646801	160647700	+	0	NA	promoter-TSS (NM_003037)	promoter-TSS (NM_003037)	61	NM_003037	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
214142	chr7	144352421	144353250	+	0	NA	intron (NR_126022, intron 1 of 3)	intron (NR_126022, intron 1 of 3)	-2567	NM_005435	7984		NM_005435	ENSG00000050327	ARHGEF5	GEF5|P60|TIM|TIM1	Rho guanine nucleotide exchange factor 5	protein-coding
145405	chr20	41620621	41620880	+	0	NA	Intergenic	AluY|SINE|Alu	-2373	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
173322	chr4	7541271	7541430	+	0	NA	intron (NM_020777, intron 3 of 26)	intron (NM_020777, intron 3 of 26)	81322	NR_036238	100422826		NR_036238	ENSG00000266690	MIR4274	-	microRNA 4274	ncRNA
206184	chr7	28151771	28152480	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-28332	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
144003	chr20	33139051	33139450	+	0	NA	Intergenic	Intergenic	-22520	NM_001319164	140683		NM_080574	ENSG00000131050	BPIFA2	C20orf70|PSP|SPLUNC2|bA49G10.1	BPI fold containing family A member 2	protein-coding
219206	chr8	66662351	66662450	+	0	NA	intron (NM_025054, intron 1 of 2)	intron (NM_025054, intron 1 of 2)	4831	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
121858	chr19	48253271	48253430	+	0	NA	intron (NM_001351783, intron 1 of 12)	AluSx|SINE|Alu	-2325	NR_040599	100505812		NR_040599	ENSG00000268001	CARD8-AS1	-	CARD8 antisense RNA 1	ncRNA
19347	chr1	173845801	173846680	+	0	NA	intron (NM_001365212, intron 12 of 15)	AluJo|SINE|Alu	-17008	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
141683	chr2	241806221	241806680	+	0	NA	Intergenic	Intergenic	-2743	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
12195	chr1	100380221	100380480	+	0	NA	intron (NM_001319210, intron 3 of 16)	intron (NM_001319210, intron 3 of 16)	27844	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
140586	chr2	233369701	233369900	+	0	NA	intron (NM_152879, intron 1 of 29)	intron (NM_152879, intron 1 of 29)	15306	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
81640	chr16	10936971	10937680	+	0	NA	TTS (NR_104444)	TTS (NR_104444)	5143	NM_014015	28955		NM_014015	ENSG00000182108	DEXI	MYLE	Dexi homolog	protein-coding
128746	chr2	62042051	62042150	+	0	NA	intron (NM_001371765, intron 2 of 2)	LTR12D|LTR|ERV1	136458	NM_152516	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
180615	chr5	16556021	16556280	+	0	NA	intron (NM_001034850, intron 3 of 8)	intron (NM_001034850, intron 3 of 8)	-47152	NM_019000	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
46431	chr11	128033001	128033200	+	0	NA	Intergenic	AluSz|SINE|Alu	-175666	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
54317	chr12	89523351	89523450	+	0	NA	exon (NM_001199782, exon 3 of 3)	exon (NM_001199782, exon 3 of 3)	1396	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
7249	chr1	32350971	32352380	+	0	NA	Intergenic	CpG	10568	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
151135	chr21	44897751	44898350	+	0	NA	intron (NM_001127491, intron 8 of 15)	MER77|LTR|ERVL	22849	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
154283	chr22	31661821	31663250	+	0	NA	promoter-TSS (NM_001326419)	promoter-TSS (NM_001326419)	29	NM_001326412	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
83733	chr16	28601021	28601680	+	0	NA	Intergenic	Intergenic	-4280	NM_001363863	6799		NM_001054	ENSG00000197165	SULT1A2	HAST4|P-PST|P-PST 2|ST1A2|STP2|TSPST2	sulfotransferase family 1A member 2	protein-coding
53878	chr12	70260621	70261280	+	0	NA	intron (NR_037615, intron 1 of 16)	L1M4b|LINE|L1	17236	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
72917	chr15	40369851	40369950	+	0	NA	exon (NM_033510, exon 8 of 8)	exon (NM_033510, exon 8 of 8)	11681	NM_033510	85455		NM_033510	ENSG00000140323	DISP2	C15orf36|DISPB|HsT16908|LINC00594	dispatched RND transporter family member 2	protein-coding
91337	chr17	4441471	4442030	+	0	NA	intron (NM_001320449, intron 2 of 10)	AluSq2|SINE|Alu	7810	NM_182538	201305		NM_182538	ENSG00000182557	SPNS3	SLC62A3|SLC63A3	SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)	protein-coding
47100	chr12	647321	647780	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	-3914	NR_160428	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
196628	chr6	44269571	44269750	+	0	NA	promoter-TSS (NM_001137560)	promoter-TSS (NM_001137560)	-790	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
158052	chr22	49946671	49947130	+	0	NA	Intergenic	Intergenic	-13872	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
220456	chr8	100409551	100410900	+	0	NA	Intergenic	Intergenic	27462	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
154912	chr22	37193771	37194600	+	0	NA	intron (NM_001365878, intron 2 of 4)	MER41-int|LTR|ERV1	5238	NM_001365878	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
114992	chr19	14046571	14046750	+	0	NA	intron (NM_004843, intron 8 of 13)	intron (NM_004843, intron 8 of 13)	10978	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
86044	chr16	57552201	57552400	+	0	NA	intron (NM_153837, intron 1 of 11)	Tigger1|DNA|TcMar-Tigger	9657	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
148714	chr21	6563371	6563730	+	0	NA	intron (NM_000394, intron 2 of 2)	intron (NM_000394, intron 2 of 2)	1630	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
47468	chr12	3883051	3883430	+	0	NA	Intergenic	Intergenic	-9792	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
139167	chr2	219181301	219181530	+	0	NA	exon (NM_024293, exon 7 of 9)	exon (NM_024293, exon 7 of 9)	2706	NM_001321110	79137		NM_024293	ENSG00000144567	RETREG2	C2orf17|FAM134A|MAG-2	reticulophagy regulator family member 2	protein-coding
118464	chr19	35883721	35884380	+	0	NA	Intergenic	AluJb|SINE|Alu	15476	NM_001024807	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
209169	chr7	75357801	75358000	+	0	NA	intron (NR_003614, intron 1 of 4)	AluSx1|SINE|Alu	1097	NR_003614	5380		NR_003614		PMS2P2	PMS2L2|PMS4	PMS1 homolog 2, mismatch repair system component pseudogene 2	pseudo
234410	chrX	16788321	16788980	+	0	NA	intron (NM_001168683, intron 1 of 7)	7SLRNA|srpRNA|srpRNA	2184	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
53171	chr12	58920221	58920480	+	0	NA	promoter-TSS (NM_001136051)	promoter-TSS (NM_001136051)	154	NM_153377	121227		NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding
61802	chr13	75530521	75531030	+	0	NA	intron (NM_001287394, intron 1 of 2)	MIRb|SINE|MIR	7097	NM_203497	170622		NM_203495	ENSG00000188243	COMMD6	Acrg	COMM domain containing 6	protein-coding
152587	chr22	21166921	21167280	+	0	NA	promoter-TSS (NR_165621)	promoter-TSS (NR_165621)	-765	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
192175	chr6	17664121	17664950	+	0	NA	intron (NM_001278209, intron 9 of 22)	L1MC5a|LINE|L1	-41595	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
9412	chr1	47533301	47533900	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	95556	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
86552	chr16	67191551	67192880	+	0	NA	promoter-TSS (NM_001950)	promoter-TSS (NM_001950)	60	NM_001950	1874		NM_001950	ENSG00000205250	E2F4	E2F-4	E2F transcription factor 4	protein-coding
28359	chr10	47165451	47166680	+	0	NA	Intergenic	Intergenic	-134132	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
3100	chr1	12205301	12205900	+	0	NA	intron (NM_001066, intron 9 of 9)	L2b|LINE|L2	13887	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
226162	chr9	63822851	63823600	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-3571	NR_039688	100616184		NR_039688	ENSG00000276029	MIR4477A	-	microRNA 4477a	ncRNA
141784	chr2	242182551	242182950	+	0	NA	Intergenic	TAR1|Satellite|telo	94117	NR_130699	728323		NR_024437		LINC01881	-	long intergenic non-protein coding RNA 1881	ncRNA
109586	chr19	911171	911330	+	0	NA	intron (NM_138774, intron 1 of 7)	AluSx1|SINE|Alu	1969	NM_138774	91300		NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
122823	chr19	50401801	50402400	+	0	NA	exon (NM_001308632, exon 4 of 26)	exon (NM_001308632, exon 4 of 26)	3248	NM_001308632	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
67910	chr14	74613671	74614130	+	0	NA	Intergenic	L2a|LINE|L2	-1663	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
185194	chr5	119386621	119386950	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	30766	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
109807	chr19	1158501	1159280	+	0	NA	intron (NM_014963, intron 1 of 31)	CpG	15378	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
72725	chr15	38688101	38688300	+	0	NA	Intergenic	MIR|SINE|MIR	-8398	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
94708	chr17	30705601	30706230	+	0	NA	Intergenic	Intergenic	-3693	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
182787	chr5	68447751	68447850	+	0	NA	Intergenic	Intergenic	155223	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
21902	chr1	207818001	207818780	+	0	NA	promoter-TSS (NR_026817)	promoter-TSS (NR_026817)	11	NR_026817	148696		NM_001039568		LOC148696	-	uncharacterized LOC148696	ncRNA
48167	chr12	7959501	7959980	+	0	NA	Intergenic	Intergenic	-23553	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
136736	chr2	181245251	181245750	+	0	NA	intron (NR_130784, intron 2 of 4)	intron (NR_130784, intron 2 of 4)	60152	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
2615	chr1	10153001	10153200	+	0	NA	intron (NM_001105562, intron 21 of 27)	LTR50|LTR|ERVL	-57470	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
143278	chr20	25249571	25249730	+	0	NA	intron (NM_002862, intron 1 of 19)	intron (NM_002862, intron 1 of 19)	1565	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
27810	chr10	37860771	37861130	+	0	NA	Intergenic	MER57C2|LTR|ERV1	-2847	NM_001352477	57209		NM_021045	ENSG00000198105	ZNF248	bA162G10.3	zinc finger protein 248	protein-coding
124245	chr19	57476971	57477830	+	0	NA	5' UTR (NM_001144068, exon 1 of 4)	5' UTR (NM_001144068, exon 1 of 4)	166	NM_001024596	400720		NM_001024596	ENSG00000197128	ZNF772	-	zinc finger protein 772	protein-coding
90419	chr17	1343451	1344150	+	0	NA	TTS (NM_006761)	TTS (NM_006761)	56422	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
24346	chr1	239814451	239814950	+	0	NA	intron (NM_001375983, intron 5 of 6)	intron (NM_001375983, intron 5 of 6)	85172	NR_046582	100873984		NR_046582	ENSG00000234601	CHRM3-AS1	-	CHRM3 antisense RNA 1	ncRNA
29753	chr10	72215171	72216610	+	0	NA	promoter-TSS (NM_001369111)	promoter-TSS (NM_001369111)	66	NM_001369106	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
21371	chr1	205141601	205142300	+	0	NA	TTS (NM_199462)	TTS (NM_199462)	-19972	NM_001193272	5929		NM_005057	ENSG00000117222	RBBP5	RBQ3|SWD1	RB binding protein 5, histone lysine methyltransferase complex subunit	protein-coding
25379	chr10	6483901	6484350	+	0	NA	intron (NM_001282644, intron 10 of 17)	intron (NM_001282644, intron 10 of 17)	96151	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
30126	chr10	74034351	74035000	+	0	NA	intron (NM_014000, intron 1 of 21)	L2a|LINE|L2	36559	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
152806	chr22	21849071	21849230	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSx|SINE|Alu	18495	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
205152	chr7	7194221	7194480	+	0	NA	intron (NM_020156, intron 1 of 3)	L1PB1|LINE|L1	11806	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
39914	chr11	62517801	62518330	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	27599	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
171740	chr3	197982901	197983300	+	0	NA	intron (NM_001136049, intron 6 of 16)	intron (NM_001136049, intron 6 of 16)	22883	NR_026787	89782		NM_033029	ENSG00000185621	LMLN	GP63|INV|IX14|LMNL1|MSP	leishmanolysin like peptidase	protein-coding
190179	chr5	178187221	178187580	+	0	NA	promoter-TSS (NM_001358008)	promoter-TSS (NM_001358008)	-29	NM_001358008	64396		NM_001358008	ENSG00000244234	GMCL2	GCL|GMCL1L|GMCL1P1	germ cell-less 2, spermatogenesis associated	protein-coding
185929	chr5	132883071	132883630	+	0	NA	exon (NM_014423, exon 20 of 21)	exon (NM_014423, exon 20 of 21)	9682	NM_052971	116842		NM_052971	ENSG00000164406	LEAP2	LEAP-2	liver enriched antimicrobial peptide 2	protein-coding
166362	chr3	113000701	113000900	+	0	NA	intron (NM_138485, intron 4 of 4)	intron (NM_138485, intron 4 of 4)	9816	NM_014170	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
176578	chr4	98673071	98673430	+	0	NA	Intergenic	Intergenic	14348	NR_148380	105377342		NR_148380		TSPAN5-DT	-	TSPAN5 divergent transcript	ncRNA
134434	chr2	143137671	143138580	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	8706	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
213625	chr7	139620871	139621450	+	0	NA	intron (NM_022740, intron 6 of 14)	MIRb|SINE|MIR	97475	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
60264	chr13	40602651	40603100	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	63766	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
91906	chr17	7304821	7305280	+	0	NA	Intergenic	Intergenic	-1949	NM_001143760	1984		NM_001970	ENSG00000132507	EIF5A	EIF-5A|EIF5A1|FABAS|eIF-4D|eIF5AI	eukaryotic translation initiation factor 5A	protein-coding
42758	chr11	72727071	72727230	+	0	NA	5' UTR (NM_001040118, exon 3 of 35)	5' UTR (NM_001040118, exon 3 of 35)	-4792	NM_001135190	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
62649	chr13	101757471	101757730	+	0	NA	intron (NM_175929, intron 3 of 4)	intron (NM_175929, intron 3 of 4)	159345	NM_004115	2259		NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|NYS4|SCA27|SCA27A|SCA27B	fibroblast growth factor 14	protein-coding
217018	chr8	23218701	23219100	+	0	NA	intron (NM_003844, intron 1 of 9)	MIR|SINE|MIR	6202	NM_003844	8797		NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
191224	chr6	5706001	5706200	+	0	NA	intron (NM_001374875, intron 6 of 6)	MER1B|DNA|hAT-Charlie	-10828	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
140807	chr2	236365221	236365480	+	0	NA	intron (NM_001270585, intron 14 of 18)	intron (NM_001270585, intron 14 of 18)	-101005	NM_212556	401036		NM_212556	ENSG00000182177	ASB18	ASB-18	ankyrin repeat and SOCS box containing 18	protein-coding
45696	chr11	119070201	119070400	+	0	NA	non-coding (NR_165448, exon 4 of 14)	non-coding (NR_165448, exon 4 of 14)	2287	NM_001378221	55823		NM_021729	ENSG00000160695	VPS11	END1|HLD12|HLD12; DYT32|PEP5|RNF108|hVPS11	VPS11 core subunit of CORVET and HOPS complexes	protein-coding
117970	chr19	33311271	33311430	+	0	NA	Intergenic	Intergenic	8529	NR_026887	80054		NR_026887	ENSG00000267296	CEBPA-DT	ADINR|CEBPA-AS1	CEBPA divergent transcript	ncRNA
116265	chr19	17679301	17679500	+	0	NA	intron (NM_001080421, intron 1 of 41)	AluSx|SINE|Alu	8799	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
94342	chr17	28870971	28871880	+	0	NA	Intergenic	MIRb|SINE|MIR	-9695	NR_039885	100616385		NR_039885	ENSG00000284085	MIR4732	mir-4732	microRNA 4732	ncRNA
78043	chr15	90058171	90058630	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	23807	NR_146321	109729181		NR_146321	ENSG00000259291	ZNF710-AS1	-	ZNF710 antisense RNA 1	ncRNA
68247	chr14	76980371	76980730	+	0	NA	Intergenic	Intergenic	20912	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
198349	chr6	105136521	105137450	+	0	NA	promoter-TSS (NR_037157)	promoter-TSS (NR_037157)	172	NM_001199563	11149		NM_007073	ENSG00000112276	BVES	CARICK|HBVES|LGMD2X|LGMDR25|POP1|POPDC1	blood vessel epicardial substance	protein-coding
15544	chr1	150538471	150538630	+	0	NA	Intergenic	Intergenic	-10858	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
43065	chr11	74491971	74492130	+	0	NA	3' UTR (NM_001329942, exon 2 of 2)	3' UTR (NM_001329942, exon 2 of 2)	-1335	NM_001319240	100287896		NM_198519	ENSG00000254837	LIPT2-AS1	-	LIPT2 antisense RNA 1	ncRNA
214393	chr7	149787471	149787980	+	0	NA	non-coding (NR_163594, exon 23 of 103)	non-coding (NR_163594, exon 23 of 103)	11683	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
84526	chr16	30521701	30521900	+	0	NA	3' UTR (NM_001114380, exon 29 of 29)	3' UTR (NM_001114380, exon 29 of 29)	4766	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
34241	chr10	130167551	130168050	+	0	NA	intron (NM_001199868, intron 6 of 11)	intron (NM_001199868, intron 6 of 11)	31391	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
31276	chr10	92294271	92294430	+	0	NA	intron (NM_017824, intron 1 of 5)	intron (NM_017824, intron 1 of 5)	3183	NM_017824	54708		NM_017824	ENSG00000198060	MARCHF5	MARCH-V|MARCH5|MITOL|RNF153	membrane associated ring-CH-type finger 5	protein-coding
95720	chr17	38568721	38569180	+	0	NA	intron (NM_025248, intron 2 of 18)	intron (NM_025248, intron 2 of 18)	37002	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
123697	chr19	55019701	55019900	+	0	NA	intron (NM_001256017, intron 4 of 6).2	AluY|SINE|Alu	18464	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
40144	chr11	62847101	62847300	+	0	NA	Intergenic	LTR19A|LTR|ERV1	-5391	NM_001369451	54663		NM_018093	ENSG00000133316	WDR74	Nsa1	WD repeat domain 74	protein-coding
56885	chr12	120301801	120303080	+	0	NA	intron (NM_012240, intron 1 of 3)	intron (NM_012240, intron 1 of 3)	119	NM_012240	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
15052	chr1	148401121	148401480	+	0	NA	Intergenic	Intergenic	-1206	NR_168364	100132057		NR_033189	ENSG00000291232	PDE4DIPP6	-	PDE4DIP pseudogene 6	pseudo
31083	chr10	89213151	89213600	+	0	NA	TTS (NM_001127605)	TTS (NM_001127605)	-6058	NM_003956	9023		NM_003956	ENSG00000138135	CH25H	C25H	cholesterol 25-hydroxylase	protein-coding
43090	chr11	74783251	74783850	+	0	NA	intron (NM_001098638, intron 1 of 5)	intron (NM_001098638, intron 1 of 5)	34701	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
182619	chr5	66307701	66307980	+	0	NA	Intergenic	Intergenic	-98394	NR_146488	101928741		NR_146488		LINC02065	-	long intergenic non-protein coding RNA 2065	ncRNA
144309	chr20	34821651	34821950	+	0	NA	promoter-TSS (NM_001318240)	promoter-TSS (NM_001318240)	-161	NM_001318240	23054		NM_014071	ENSG00000198646	NCOA6	AIB3|ASC2|NRC|PRIP|RAP250|TRBP	nuclear receptor coactivator 6	protein-coding
30058	chr10	73851301	73851500	+	0	NA	intron (NR_160263, intron 4 of 21)	intron (NR_160263, intron 4 of 21)	23155	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
201342	chr6	144561371	144561730	+	0	NA	intron (NM_007124, intron 49 of 73)	intron (NM_007124, intron 49 of 73)	-21598	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
89035	chr16	88427701	88428280	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-25290	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
31756	chr10	97851621	97852600	+	0	NA	intron (NM_001010917, intron 1 of 4)	MIRc|SINE|MIR	2267	NM_001010917	401647		NM_001010917	ENSG00000155265	GOLGA7B	C10orf132|C10orf133|bA451M19.3|bA459F3.4	golgin A7 family member B	protein-coding
73166	chr15	41480821	41481080	+	0	NA	3' UTR (NM_015138, exon 18 of 18)	3' UTR (NM_015138, exon 18 of 18)	-12924	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
161526	chr3	42604621	42604950	+	0	NA	intron (NM_001349126, intron 2 of 18)	AluSz6|SINE|Alu	-3707	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
114618	chr19	12976071	12976550	+	0	NA	Intergenic	AluJo|SINE|Alu	6692	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
154698	chr22	36399321	36399780	+	0	NA	Intergenic	Intergenic	-11583	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
140034	chr2	231178951	231179280	+	0	NA	Intergenic	Intergenic	-19516	NM_001352759	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
69660	chr14	97980071	97980230	+	0	NA	Intergenic	Intergenic	-2026	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
121677	chr19	47506401	47506650	+	0	NA	intron (NR_038456, intron 1 of 11)	intron (NR_038456, intron 1 of 11)	8538	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
136360	chr2	176087921	176088580	+	0	NA	Intergenic	CpG	-4288	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
140301	chr2	232441971	232442450	+	0	NA	Intergenic	Intergenic	-13943	NM_001631	248		NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
216631	chr8	22104601	22105000	+	0	NA	TTS (NR_148727)	TTS (NR_148727)	4619	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
64298	chr14	23558201	23558600	+	0	NA	intron (NM_024328, intron 1 of 1)	intron (NM_024328, intron 1 of 1)	2129	NM_024328	79178		NM_024328	ENSG00000259431	THTPA	THTP|THTPASE	thiamine triphosphatase	protein-coding
42278	chr11	68296701	68296900	+	0	NA	Intergenic	Intergenic	-15791	NM_001291902	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
93269	chr17	18043501	18043730	+	0	NA	intron (NM_024052, intron 1 of 5)	intron (NM_024052, intron 1 of 5)	4207	NM_024052	79018		NM_024052	ENSG00000141034	GID4	C17orf39|VID2|VID24	GID complex subunit 4 homolog	protein-coding
160623	chr3	31530171	31530630	+	0	NA	Intergenic	L2b|LINE|L2	-2525	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
16519	chr1	154932121	154933130	+	0	NA	intron (NM_001323012, intron 1 of 4)	MIRc|SINE|MIR	4094	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
99082	chr17	48994171	48994580	+	0	NA	Intergenic	Intergenic	-3010	NM_006546	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
115083	chr19	14219301	14219900	+	0	NA	Intergenic	AluSz|SINE|Alu	-13431	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
114485	chr19	12751921	12752750	+	0	NA	intron (NM_017682, intron 1 of 9)	intron (NM_017682, intron 1 of 9)	544	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
138929	chr2	218225401	218227030	+	0	NA	intron (NM_152862, intron 3 of 10)	AluSx1|SINE|Alu	8818	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
208927	chr7	74081171	74081900	+	0	NA	Intergenic	LTR33|LTR|ERVL	-2269	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
150300	chr21	41996901	41997100	+	0	NA	intron (NM_020727, intron 1 of 1)	THE1B|LTR|ERVL-MaLR	-12194	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
118008	chr19	34132621	34133180	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-39604	NR_169265	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
209237	chr7	75775671	75775830	+	0	NA	intron (NM_001371936, intron 1 of 3)	LTR16C|LTR|ERVL	-3539	NM_001371938	10344		NM_006072	ENSG00000006606	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	C-C motif chemokine ligand 26	protein-coding
55558	chr12	105966671	105966830	+	0	NA	Intergenic	L2a|LINE|L2	173283	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
139239	chr2	219331571	219331950	+	0	NA	intron (NM_001007089, intron 2 of 6)	CpG	1417	NM_001007089	389075		NM_001007089	ENSG00000182698	RESP18	-	regulated endocrine specific protein 18	protein-coding
69695	chr14	98173201	98174930	+	0	NA	Intergenic	Intergenic	-195941	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
226934	chr9	79605001	79605580	+	0	NA	intron (NM_001282760, intron 5 of 20)	intron (NM_001282760, intron 5 of 20)	32113	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
193407	chr6	30441121	30441680	+	0	NA	Intergenic	Intergenic	-48109	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
179128	chr4	169008001	169008200	+	0	NA	intron (NM_032783, intron 1 of 4)	intron (NM_032783, intron 1 of 4)	2155	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
8006	chr1	38005001	38006300	+	0	NA	promoter-TSS (NM_004468)	promoter-TSS (NM_004468)	-136	NM_001243878	2275		NM_004468	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
127121	chr2	37653701	37654230	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	17677	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
5042	chr1	24531971	24532850	+	0	NA	intron (NM_001251982, intron 2 of 2)	AluSx|SINE|Alu	18096	NM_001251982	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
63414	chr13	114084101	114084350	+	0	NA	intron (NM_001320821, intron 1 of 25).2	CpG	-6270	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
80689	chr16	3048571	3049000	+	0	NA	intron (NM_022468, intron 2 of 9)	L2a|LINE|L2	2224	NM_022468	64386		NM_004142	ENSG00000008516	MMP25	MMP-25|MMP20|MMP20A|MMPL1|MT-MMP 6|MT-MMP6|MT6-MMP|MT6MMP|MTMMP6	matrix metallopeptidase 25	protein-coding
147352	chr20	58309041	58310600	+	0	NA	promoter-TSS (NR_003505)	promoter-TSS (NR_003505)	105	NM_020673	57403		NM_020673	ENSG00000124209	RAB22A	-	RAB22A, member RAS oncogene family	protein-coding
160724	chr3	32435101	32435300	+	0	NA	intron (NM_138410, intron 1 of 4)	AluY|SINE|Alu	43347	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
128779	chr2	62221021	62221750	+	0	NA	intron (NM_001319075, intron 1 of 1)	intron (NM_001319075, intron 1 of 1)	5864	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
29273	chr10	69183701	69183900	+	0	NA	intron (NM_001301683, intron 2 of 15)	L1MB8|LINE|L1	3566	NM_001323587	6832		NM_003171	ENSG00000156502	SUPV3L1	SUV3	Suv3 like RNA helicase	protein-coding
189460	chr5	173035071	173036230	+	0	NA	TTS (NM_003945)	TTS (NM_003945)	14924	NR_002988	677841		NR_002988	ENSG00000212402	SNORA74B	U19-2	small nucleolar RNA, H/ACA box 74B	snoRNA
34958	chr11	489101	489730	+	0	NA	exon (NM_001329544, exon 9 of 12)	exon (NM_001329544, exon 9 of 12)	17353	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
194171	chr6	32110251	32110350	+	0	NA	promoter-TSS (NM_001365276).6	promoter-TSS (NM_001365276).6	-962	NM_001365276	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
109034	chr18	79735371	79735950	+	0	NA	intron (NM_001318511, intron 11 of 11)	CpG	54230	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
526	chr1	1222671	1223300	+	0	NA	intron (NM_016547, intron 4 of 6)	CpG	-8832	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
109301	chr19	565521	566800	+	0	NA	Intergenic	AluY|SINE|Alu	-5123	NM_198591	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
27458	chr10	31977271	31977850	+	0	NA	Intergenic	Intergenic	-48684	NM_001270695	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
26594	chr10	22230351	22231200	+	0	NA	Intergenic	Intergenic	-20792	NM_001199938	340900		NM_001199938	ENSG00000223601	EBLN1	EBLN-1	endogenous Bornavirus like nucleoprotein 1	protein-coding
176986	chr4	105135871	105136030	+	0	NA	Intergenic	L2c|LINE|L2	-9925	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
187587	chr5	142828351	142828850	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	40310	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
215219	chr7	156095501	156096100	+	0	NA	Intergenic	Intergenic	133243	NR_168379	389602		NM_001291913	ENSG00000204876	LOC389602	-	uncharacterized LOC389602	ncRNA
174824	chr4	48267771	48268130	+	0	NA	intron (NM_003215, intron 1 of 17)	intron (NM_003215, intron 1 of 17)	1888	NM_003215	7006		NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
141298	chr2	240432971	240433300	+	0	NA	Intergenic	Intergenic	-2528	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
25177	chr10	5447371	5448280	+	0	NA	intron (NR_073040, intron 1 of 9)	intron (NR_073040, intron 1 of 9)	1216	NM_005863	10276		NM_005863	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
29086	chr10	67919751	67920050	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	28498	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
17711	chr1	158798571	158798800	+	0	NA	Intergenic	L1M5|LINE|L1	-21050	NM_001005278	81442		NM_001005278	ENSG00000188340	OR6N2	OR1-23	olfactory receptor family 6 subfamily N member 2	protein-coding
238022	chrX	135094971	135095330	+	0	NA	3' UTR (NM_001348255, exon 2 of 2)	3' UTR (NM_001348255, exon 2 of 2)	3562	NM_001348255	644596		NM_001348255	ENSG00000196972	SMIM10L2B	LINC00086|LINC00087|NCRNA00086|NCRNA00087|SMIM10L2A	small integral membrane protein 10 like 2B	protein-coding
48369	chr12	9435551	9436930	+	0	NA	intron (NR_033399, intron 5 of 26)	intron (NR_033399, intron 5 of 26)	11932	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
8496	chr1	40840851	40841350	+	0	NA	TTS (NM_004700)	TTS (NM_004700)	21263	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
189791	chr5	176804071	176804230	+	0	NA	Intergenic	Intergenic	-6409	NM_133369	90249		NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
238944	chrX	154884151	154884730	+	0	NA	promoter-TSS (NM_080720)	promoter-TSS (NM_080720)	-532	NM_001017991	474381		NM_001017991	ENSG00000277858	H2AB2	H2A.B.1|H2A.Bbd|H2AB3|H2AFB2	H2A.B variant histone 2	protein-coding
28157	chr10	43572551	43573300	+	0	NA	intron (NM_001324353, intron 2 of 4)	intron (NM_001324353, intron 2 of 4)	1691	NM_001324348	8187		NM_005674	ENSG00000196793	ZNF239	HOK-2|MOK2	zinc finger protein 239	protein-coding
4616	chr1	22100521	22100780	+	0	NA	3' UTR (NM_001039802, exon 7 of 7)	3' UTR (NM_001039802, exon 7 of 7)	42447	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
203720	chr7	1070071	1070230	+	0	NA	intron (NM_032350, intron 2 of 4)	SVA_F|Retroposon|SVA	14780	NM_001303474	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
119836	chr19	41367251	41367950	+	0	NA	intron (NM_001098825, intron 1 of 3)	AluSq2|SINE|Alu	-3451	NM_030578	80776		NM_030578	ENSG00000123810	B9D2	ICIS-1|JBTS34|MKS10|MKSR-2|MKSR2	B9 domain containing 2	protein-coding
168459	chr3	143004521	143004800	+	0	NA	intron (NM_001080415, intron 1 of 27)	intron (NM_001080415, intron 1 of 27)	3090	NM_001320222	23350		NM_001080415	ENSG00000163714	U2SURP	SR140|fSAPa	U2 snRNP associated SURP domain containing	protein-coding
216709	chr8	22244101	22245600	+	0	NA	promoter-TSS (NM_001722)	promoter-TSS (NM_001722)	187	NR_029714	407037		NR_029714	ENSG00000208037	MIR320A	MIRN320|MIRN320A|hsa-mir-320a|mir-320a	microRNA 320a	ncRNA
101943	chr17	74513961	74516200	+	0	NA	Intergenic	Intergenic	16395	NM_174892	124599		NM_174892	ENSG00000178789	CD300LB	CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5	CD300 molecule like family member b	protein-coding
159591	chr3	15097951	15099950	+	0	NA	intron (NM_022340, intron 1 of 13)	CpG	198	NM_022340	64145		NM_022340	ENSG00000131381	RBSN	Rabenosyn-5|ZFYVE20	rabenosyn, RAB effector	protein-coding
119511	chr19	40524271	40524430	+	0	NA	intron (NM_020971, intron 17 of 35)	AluJo|SINE|Alu	-6141	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
130403	chr2	85326251	85327000	+	0	NA	exon (NM_001206841, exon 2 of 4)	exon (NM_001206841, exon 2 of 4)	1364	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
209010	chr7	74288971	74289800	+	0	NA	promoter-TSS (NM_003388)	promoter-TSS (NM_003388)	-22	NM_032421	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
49763	chr12	31790771	31791630	+	0	NA	TTS (NM_001013699)	TTS (NM_001013699)	1098	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
95838	chr17	38811301	38812230	+	0	NA	intron (NM_017748, intron 4 of 9)	MER5A|DNA|hAT-Charlie	-11860	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
57922	chr12	123535471	123535830	+	0	NA	promoter-TSS (NR_037470)	promoter-TSS (NR_037470)	-759	NR_037470	100500909		NR_037470	ENSG00000266655	MIR3908	-	microRNA 3908	ncRNA
109978	chr19	1400971	1401900	+	0	NA	exon (NM_138924, exon 1 of 5)	exon (NM_138924, exon 1 of 5)	107	NM_138924	2593		NM_000156	ENSG00000130005	GAMT	CCDS2|HEL-S-20|PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
57893	chr12	123447001	123447280	+	0	NA	Intergenic	AluSp|SINE|Alu	-10407	NM_145058	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
10987	chr1	84481271	84481430	+	0	NA	intron (NM_025065, intron 2 of 8)	L1ME3D|LINE|L1	2084	NM_025065	80135		NM_025065	ENSG00000117133	RPF1	BXDC5	ribosome production factor 1 homolog	protein-coding
85019	chr16	31693901	31694100	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6613	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
81011	chr16	4183251	4184550	+	0	NA	Intergenic	CpG	58180	NM_001098814	6345		NM_001098814	ENSG00000185739	SRL	SAR	sarcalumenin	protein-coding
71236	chr14	105179371	105179750	+	0	NA	intron (NM_177533, intron 1 of 4)	intron (NM_177533, intron 1 of 4)	1752	NM_177533	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
187806	chr5	146459051	146459150	+	0	NA	exon (NM_001040006, exon 4 of 21)	exon (NM_001040006, exon 4 of 21)	11767	NM_006706	10915		NM_006706	ENSG00000113649	TCERG1	CA150|TAF2S|Urn1	transcription elongation regulator 1	protein-coding
146793	chr20	50928271	50928700	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-2499	NR_110007	101927631		NR_110007	ENSG00000259456	ADNP-AS1	-	ADNP antisense RNA 1	ncRNA
156463	chr22	41254071	41254430	+	0	NA	intron (NM_001278651, intron 12 of 16)	intron (NM_001278651, intron 12 of 16)	-1200	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
229425	chr9	121353251	121354380	+	0	NA	intron (NM_001270526, intron 3 of 6)	L2c|LINE|L2	16435	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
141266	chr2	239946801	239947300	+	0	NA	intron (NR_136158, intron 7 of 10)	intron (NR_136158, intron 7 of 10)	-3956	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
198376	chr6	105469051	105469150	+	0	NA	Intergenic	Intergenic	-66018	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
149590	chr21	33268371	33269800	+	0	NA	intron (NM_000628, intron 2 of 6)	intron (NM_000628, intron 2 of 6)	2718	NM_000628	3588		NM_000628	ENSG00000243646	IL10RB	CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IBD25|IL-10R2|IL-10RB	interleukin 10 receptor subunit beta	protein-coding
97745	chr17	44393171	44394030	+	0	NA	Intergenic	Intergenic	-3951	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
122241	chr19	49015451	49016150	+	0	NA	TTS (NM_000894)	TTS (NM_000894)	1291	NM_000894	3972		NM_000894	ENSG00000104826	LHB	CGB4|HH23|LSH-B|LSH-beta	luteinizing hormone subunit beta	protein-coding
108242	chr18	63215651	63215750	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	104069	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
157787	chr22	46765721	46766130	+	0	NA	intron (NR_104292, intron 1 of 13)	AluSx1|SINE|Alu	2183	NR_104292	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
43320	chr11	76322421	76322880	+	0	NA	Intergenic	Intergenic	58315	NR_130898	5612		NM_004705	ENSG00000137492	THAP12	DAP4|P52rIPK|PRKRIR|THAP0	THAP domain containing 12	protein-coding
95131	chr17	35043251	35043550	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	20307	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
91139	chr17	3740471	3741580	+	0	NA	intron (NM_002208, intron 19 of 30)	intron (NM_002208, intron 19 of 30)	17122	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
154666	chr22	36354021	36354430	+	0	NA	intron (NM_002473, intron 1 of 40)	MIR3|SINE|MIR	33742	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
58578	chr12	132445701	132446850	+	0	NA	Intergenic	CpG	-43876	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
72652	chr15	38508471	38508930	+	0	NA	intron (NM_001128602, intron 8 of 15)	intron (NM_001128602, intron 8 of 15)	54573	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
22768	chr1	224407351	224408300	+	0	NA	intron (NM_001115113, intron 7 of 13)	intron (NM_001115113, intron 7 of 13)	-9514	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
235816	chrX	49256901	49257450	+	0	NA	intron (NM_001114377, intron 3 of 10)	intron (NM_001114377, intron 3 of 10)	7535	NM_014009	50943		NM_014009	ENSG00000049768	FOXP3	AIID|DIETER|IPEX|JM2|PIDX|XPID	forkhead box P3	protein-coding
4783	chr1	23557101	23557300	+	0	NA	TTS (NM_002167)	TTS (NM_002167)	2301	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
54119	chr12	76458321	76458580	+	0	NA	intron (NM_001319652, intron 5 of 25)	AluJr4|SINE|Alu	-35165	NM_001319655	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
74789	chr15	63278901	63279100	+	0	NA	intron (NM_001145646, intron 1 of 4)	intron (NM_001145646, intron 1 of 4)	1395	NM_031301	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
157619	chr22	46057071	46057500	+	0	NA	non-coding (NR_027034, exon 3 of 3)	non-coding (NR_027034, exon 3 of 3)	-3060	NR_165243	55267		NR_165243		PRR34	C22orf26	PRR34 long non-coding RNA	ncRNA
117699	chr19	28575321	28575780	+	0	NA	intron (NR_110759, intron 5 of 9)	intron (NR_110759, intron 5 of 9)	-31138	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
37664	chr11	22832271	22832630	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-2649	NM_001320342	258010		NM_148893	ENSG00000198168	SVIP	-	small VCP interacting protein	protein-coding
23055	chr1	226625201	226625500	+	0	NA	Intergenic	Intergenic	49718	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
90843	chr17	2348771	2348930	+	0	NA	intron (NM_001346700, intron 2 of 22)	AluJr|SINE|Alu	11349	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
190146	chr5	178111021	178111300	+	0	NA	Intergenic	AluSp|SINE|Alu	-2372	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
98220	chr17	46145151	46145250	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	47582	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
14087	chr1	120859721	120860150	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	-8950	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
6624	chr1	28893451	28893950	+	0	NA	intron (NM_001376022, intron 1 of 20)	intron (NM_001376022, intron 1 of 20)	6600	NM_001376023	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
140978	chr2	237970421	237970680	+	0	NA	intron (NM_001278305, intron 1 of 9)	MIR3|SINE|MIR	1757	NM_001278305	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
235531	chrX	47228071	47228230	+	0	NA	intron (NM_033018, intron 14 of 15)	L1MC5|LINE|L1	-4859	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
19149	chr1	171562121	171562380	+	0	NA	intron (NM_015172, intron 20 of 33)	L2a|LINE|L2	-57513	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
50760	chr12	49023821	49024230	+	0	NA	intron (NM_003482, intron 51 of 54)	MIRc|SINE|MIR	-5249	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
65747	chr14	53181551	53181800	+	0	NA	Intergenic	LTR10F|LTR|ERV1	28321	NR_110062	101927620		NR_110062	ENSG00000258731	DDHD1-DT	-	DDHD1 divergent transcript	ncRNA
226078	chr9	62621001	62621200	+	0	NA	Intergenic	LTR49|LTR|ERV1	88538	NR_147619	103908604		NR_147619		FAM88F	-	family with sequence similarity 88 member F	ncRNA
210091	chr7	97027401	97027880	+	0	NA	Intergenic	Intergenic	-2809	NM_005221	1749		NM_005221	ENSG00000105880	DLX5	SHFM1|SHFM1D	distal-less homeobox 5	protein-coding
102416	chr17	75627971	75628730	+	0	NA	exon (NM_004259, exon 18 of 20)	exon (NM_004259, exon 18 of 20)	-5084	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
100590	chr17	63434821	63436480	+	0	NA	intron (NM_001017916, intron 4 of 5)	intron (NM_001017916, intron 4 of 5)	4617	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
126910	chr2	32564621	32564880	+	0	NA	intron (NR_125793, intron 1 of 1)	L1M4b|LINE|L1	10068	NR_125793	103752586		NR_125793	ENSG00000290864	BIRC6-AS2	linc-birc6|megamind	BIRC6 antisense RNA 2	ncRNA
119497	chr19	40468851	40470150	+	0	NA	intron (NM_020971, intron 1 of 35)	AluSg4|SINE|Alu	2499	NM_020971	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
146694	chr20	50541401	50542000	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	31317	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
159417	chr3	13544471	13545750	+	0	NA	Intergenic	Intergenic	-4015	NM_001998	2199		NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
138194	chr2	202665151	202665850	+	0	NA	intron (NM_173511, intron 1 of 7)	MLT1E2|LTR|ERVL-MaLR	30531	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
22539	chr1	222420421	222421100	+	0	NA	Intergenic	Intergenic	127344	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
201193	chr6	143398801	143399000	+	0	NA	Intergenic	Intergenic	43777	NM_001286259	134637		NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase tRNA specific 2	protein-coding
50795	chr12	49054171	49054930	+	0	NA	exon (NM_003482, exon 4 of 55)	exon (NM_003482, exon 4 of 55)	6244	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
115389	chr19	15260971	15261130	+	0	NA	intron (NM_001379291, intron 7 of 19)	intron (NM_001379291, intron 7 of 19)	19401	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
164480	chr3	59989521	59989780	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	91259	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
212740	chr7	129909351	129909650	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	43460	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
147250	chr20	57424521	57424950	+	0	NA	Intergenic	AluY|SINE|Alu	-31679	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
77051	chr15	78870371	78870750	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2221	NM_206839	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
44239	chr11	96555871	96556230	+	0	NA	Intergenic	L1PA3|LINE|L1	47625	NR_135097	105369443		NR_135097	ENSG00000256684	LINC02737	-	long intergenic non-protein coding RNA 2737	ncRNA
140082	chr2	231447471	231448030	+	0	NA	Intergenic	AluSc8|SINE|Alu	8186	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
99526	chr17	50348351	50348450	+	0	NA	intron (NM_022167, intron 1 of 10)	intron (NM_022167, intron 1 of 10)	2274	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
204641	chr7	5416221	5416600	+	0	NA	intron (NM_001080495, intron 2 of 29)	AluYm1|SINE|Alu	7136	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
209989	chr7	92840271	92840630	+	0	NA	intron (NR_110088, intron 1 of 1)	intron (NR_110088, intron 1 of 1)	-3877	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
2631	chr1	10214071	10214930	+	0	NA	intron (NM_001365952, intron 1 of 48)	AluSg|SINE|Alu	2884	NM_001365952	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
129064	chr2	65074151	65074650	+	0	NA	exon (NM_001319101, exon 4 of 7)	exon (NM_001319101, exon 4 of 7)	17984	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
89342	chr16	88756271	88756530	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	13633	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
139987	chr2	230924351	230925930	+	0	NA	intron (NM_005683, intron 1 of 1)	intron (NM_005683, intron 1 of 1)	102	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
56250	chr12	111997221	111998080	+	0	NA	intron (NM_138341, intron 2 of 9)	intron (NM_138341, intron 2 of 9)	15515	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
226213	chr9	65677901	65679180	+	0	NA	intron (NR_104600, intron 2 of 3)	L1M5|LINE|L1	2612	NM_001363751	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
233622	chrX	386271	387830	+	0	NA	promoter-TSS (NM_013239)	promoter-TSS (NM_013239)	-143	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
184255	chr5	96702321	96703000	+	0	NA	promoter-TSS (NM_001330633)	promoter-TSS (NM_001330633)	0	NM_001042446	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
44988	chr11	116946521	116946850	+	0	NA	intron (NM_001366686, intron 3 of 24)	LTR40b|LTR|ERVL	-108735	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
194591	chr6	33448371	33448530	+	0	NA	intron (NM_006772, intron 18 of 18).2	intron (NM_006772, intron 18 of 18).2	-6126	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
170920	chr3	194194221	194194480	+	0	NA	Intergenic	Intergenic	11957	NR_125404	100505920		NR_125403		LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
48809	chr12	12016821	12017480	+	0	NA	Intergenic	Intergenic	-32711	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
62942	chr13	111372801	111373530	+	0	NA	Intergenic	LTR72B|LTR|ERV1	52523	NM_152324	121793		NM_152324	ENSG00000153495	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
88077	chr16	81478501	81479280	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-16464	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
226982	chr9	82961651	82961750	+	0	NA	Intergenic	Intergenic	101442	NM_152573	158158		NM_152573	ENSG00000165105	RASEF	RAB45|TSG	RAS and EF-hand domain containing	protein-coding
183735	chr5	81194501	81195500	+	0	NA	intron (NM_006909, intron 18 of 26)	intron (NM_006909, intron 18 of 26)	-38320	NM_001099736	1160		NM_001825	ENSG00000131730	CKMT2	SMTCK	creatine kinase, mitochondrial 2	protein-coding
157251	chr22	43433071	43433230	+	0	NA	intron (NM_001362786, intron 2 of 6)	L3|LINE|CR1	16598	NM_001362786	758		NM_001044370	ENSG00000186732	MPPED1	239AB|C22orf1|FAM1A	metallophosphoesterase domain containing 1	protein-coding
78724	chr15	98651751	98652680	+	0	NA	promoter-TSS (NR_126453)	promoter-TSS (NR_126453)	-994	NR_126453	104472848		NR_126453		IRAIN	IGF1R-AS|IGF1RAS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
16557	chr1	154967521	154968050	+	0	NA	exon (NM_001130040, exon 7 of 12)	exon (NM_001130040, exon 7 of 12)	2962	NM_001130040	6464		NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding
194417	chr6	33073271	33074050	+	0	NA	promoter-TSS (NM_033554)	promoter-TSS (NM_033554)	17	NM_033554	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
201240	chr6	143939871	143940260	+	0	NA	TTS (NM_001317159)	TTS (NM_001317159)	21345	NM_001317157	5325		NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
89708	chr16	89405951	89406050	+	0	NA	intron (NR_045839, intron 2 of 9)	AluSx|SINE|Alu	-24918	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109082	chr18	79949401	79950150	+	0	NA	intron (NM_001146343, intron 2 of 3)	intron (NM_001146343, intron 2 of 3)	1878	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
136262	chr2	174667401	174667800	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	15299	NM_001077269	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
146871	chr20	51491751	51492750	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	-39273	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
29522	chr10	70791551	70791650	+	0	NA	Intergenic	MER84|LTR|ERV1	-6223	NR_134531	219793		NM_152710	ENSG00000166220	TBATA	C10orf27|SPATIAL	thymus, brain and testes associated	protein-coding
11385	chr1	89662051	89662550	+	0	NA	intron (NM_032270, intron 1 of 2)	L2a|LINE|L2	29180	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
113958	chr19	10769271	10769430	+	0	NA	intron (NM_001005362, intron 2 of 19)	intron (NM_001005362, intron 2 of 19)	-10904	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
236551	chrX	72241001	72241500	+	0	NA	intron (NM_001170747, intron 3 of 3)	MLT1A1|LTR|ERVL-MaLR	-2223	NM_017669	54821		NM_017669	ENSG00000186871	ERCC6L	PICH|RAD26L	ERCC excision repair 6 like, spindle assembly checkpoint helicase	protein-coding
126089	chr2	25828751	25829050	+	0	NA	intron (NM_018263, intron 2 of 11)	MIRc|SINE|MIR	2001	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
156345	chr22	40817021	40817480	+	0	NA	non-coding (NR_104235, exon 2 of 11)	non-coding (NR_104235, exon 2 of 11)	2096	NM_006358	10478		NM_006358	ENSG00000100372	SLC25A17	PMP34	solute carrier family 25 member 17	protein-coding
40088	chr11	62789671	62790150	+	0	NA	promoter-TSS (NR_106806)	promoter-TSS (NR_106806)	95	NR_106806	102465448		NR_106806	ENSG00000284535	MIR6748	hsa-mir-6748	microRNA 6748	ncRNA
206964	chr7	38301151	38301450	+	0	NA	Intergenic	AluJb|SINE|Alu	-27653	NM_001003806	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
25601	chr10	8058001	8058200	+	0	NA	intron (NM_001002295, intron 2 of 5)	intron (NM_001002295, intron 2 of 5)	3412	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
21609	chr1	206564671	206564830	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	7586	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
41786	chr11	66850701	66852630	+	0	NA	intron (NM_022172, intron 14 of 20)	intron (NM_022172, intron 14 of 20)	-5399	NM_024036	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
158556	chr3	4468471	4469100	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1503	NM_001164675	285362		NM_182760	ENSG00000144455	SUMF1	AAPA3037|FGE|UNQ3037	sulfatase modifying factor 1	protein-coding
156870	chr22	42085371	42085730	+	0	NA	TTS (NM_002490).2	TTS (NM_002490).2	5222	NM_002490	4700		NM_002490	ENSG00000184983	NDUFA6	B14|CI-B14|LYRM6|MC1DN33|NADHB14	NADH:ubiquinone oxidoreductase subunit A6	protein-coding
150202	chr21	39373551	39373900	+	0	NA	Intergenic	Intergenic	-6519	NR_146614	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
199666	chr6	122459601	122460200	+	0	NA	intron (NM_020755, intron 1 of 9)	HAL1b|LINE|L1	11907	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
83175	chr16	23477201	23477400	+	0	NA	intron (NM_015044, intron 13 of 16)	THE1B|LTR|ERVL-MaLR	-24111	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
229267	chr9	119556171	119556350	+	0	NA	Intergenic	Intergenic	-186825	NM_014618	1620		NM_014618	ENSG00000078725	BRINP1	DBC1|DBCCR1|FAM5A	BMP/retinoic acid inducible neural specific 1	protein-coding
215378	chr7	157411271	157412730	+	0	NA	intron (NM_001363676, intron 6 of 6)	intron (NM_001363676, intron 6 of 6)	-54231	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
113608	chr19	10298771	10299130	+	0	NA	Intergenic	AluSx|SINE|Alu	8998	NM_003259	7087		NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	intercellular adhesion molecule 5	protein-coding
189873	chr5	177306871	177307450	+	0	NA	TTS (NM_031300)	TTS (NM_031300)	3361	NM_001271828	27166		NM_013237	ENSG00000169230	PRELID1	CGI-106|PRELI|PX19|SBBI12	PRELI domain containing 1	protein-coding
45618	chr11	118911761	118913100	+	0	NA	intron (NM_001378213, intron 2 of 9)	intron (NM_001378213, intron 2 of 9)	1722	NR_039713	100616376		NR_039713	ENSG00000264211	MIR4492	mir-4492	microRNA 4492	ncRNA
200676	chr6	137220971	137221130	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-1665	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
131020	chr2	88015201	88015400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-29510	NM_001024457	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
92846	chr17	16219701	16219900	+	0	NA	intron (NM_004278, intron 1 of 6)	AluSz|SINE|Alu	2590	NM_004278	9487		NM_004278	ENSG00000108474	PIGL	CHIME	phosphatidylinositol glycan anchor biosynthesis class L	protein-coding
188756	chr5	157576871	157577030	+	0	NA	Intergenic	MIR3|SINE|MIR	-1175	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
100170	chr17	58626251	58626750	+	0	NA	intron (NM_198393, intron 3 of 32)	AluSx|SINE|Alu	65545	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
209548	chr7	77247151	77247550	+	0	NA	intron (NM_020879, intron 4 of 18)	intron (NM_020879, intron 4 of 18)	-47531	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
18194	chr1	160855001	160856500	+	0	NA	intron (NM_001166664, intron 1 of 7)	intron (NM_001166664, intron 1 of 7)	7137	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
215651	chr8	397201	397550	+	0	NA	Intergenic	Intergenic	-9433	NM_012173	26260		NM_012173	ENSG00000147364	FBXO25	FBX25	F-box protein 25	protein-coding
181848	chr5	53069721	53069980	+	0	NA	intron (NR_073104, intron 16 of 28)	intron (NR_073104, intron 16 of 28)	39907	NM_004531	4338		NM_004531	ENSG00000164172	MOCS2	MCBPE|MOCO1|MOCODB|MPTS	molybdenum cofactor synthesis 2	protein-coding
123374	chr19	53900851	53901580	+	0	NA	intron (NM_001316329, intron 14 of 18)	intron (NM_001316329, intron 14 of 18)	-8063	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
138574	chr2	207726201	207726430	+	0	NA	intron (NM_001330218, intron 2 of 9)	intron (NM_001330218, intron 2 of 9)	14675	NM_001330218	151195		NM_152523	ENSG00000163249	CCNYL1	-	cyclin Y like 1	protein-coding
225604	chr9	36154351	36154730	+	0	NA	intron (NM_022343, intron 4 of 4)	L1ME4b|LINE|L1	-14848	NM_005893	881		NM_005893	ENSG00000185972	CCIN	BTBD20|KBTBD14	calicin	protein-coding
21063	chr1	203294521	203294780	+	0	NA	Intergenic	AluSz|SINE|Alu	6950	NR_117098	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
201573	chr6	149329401	149330000	+	0	NA	intron (NM_015093, intron 1 of 8)	L2b|LINE|L2	11400	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
14630	chr1	145463321	145463580	+	0	NA	Intergenic	LTR8|LTR|ERV1	-57672	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
66274	chr14	61374351	61374800	+	0	NA	intron (NM_006255, intron 1 of 13)	MSTA-int|LTR|ERVL-MaLR	53132	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
8912	chr1	43978021	43978330	+	0	NA	3' UTR (NM_001039457, exon 7 of 7)	3' UTR (NM_001039457, exon 7 of 7)	-1027	NM_003780	8704		NM_003780	ENSG00000117411	B4GALT2	B4Gal-T2|B4Gal-T3|beta4Gal-T2	beta-1,4-galactosyltransferase 2	protein-coding
54157	chr12	76588871	76589030	+	0	NA	Intergenic	MIRb|SINE|MIR	-29179	NM_001319653	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
38422	chr11	45091701	45092050	+	0	NA	Intergenic	Intergenic	-2284	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
69593	chr14	97336201	97336500	+	0	NA	Intergenic	Intergenic	-122466	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
78212	chr15	90599571	90600280	+	0	NA	intron (NM_001042574, intron 3 of 14)	intron (NM_001042574, intron 3 of 14)	-60309	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
86723	chr16	67565951	67566050	+	0	NA	intron (NM_006565, intron 1 of 11)	intron (NM_006565, intron 1 of 11)	3474	NM_006565	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
225954	chr9	41105051	41105150	+	0	NA	non-coding (NR_015361, exon 3 of 4)	non-coding (NR_015361, exon 3 of 4)	2712	NR_015361	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
215901	chr8	8141051	8141430	+	0	NA	intron (NR_147089, intron 2 of 3)	HERVS71-int|LTR|ERV1	-52151	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
126383	chr2	27495971	27496130	+	0	NA	promoter-TSS (NM_022823)	promoter-TSS (NM_022823)	-789	NM_001486	2646		NM_001486	ENSG00000084734	GCKR	FGQTL5|GKRP	glucokinase regulator	protein-coding
234145	chrX	10095751	10096300	+	0	NA	intron (NM_015691, intron 7 of 22)	MLT1F2|LTR|ERVL-MaLR	-60920	NM_001256944	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
199698	chr6	124961971	124962800	+	0	NA	promoter-TSS (NR_136734)	promoter-TSS (NR_136734)	-160	NR_136734	154214		NM_152553	ENSG00000146373	RNF217	C6orf172|IBRDC1|OSTL|dJ84N20.1	ring finger protein 217	protein-coding
228788	chr9	111640501	111640900	+	0	NA	intron (NM_004125, intron 1 of 2)	SVA_F|Retroposon|SVA	9348	NR_037148	548645		NM_001015882	ENSG00000059769	DNAJC25	bA16L21.2.1	DnaJ heat shock protein family (Hsp40) member C25	protein-coding
43421	chr11	77471621	77472100	+	0	NA	intron (NM_001376282, intron 1 of 15)	L2b|LINE|L2	2234	NM_001376277	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
1385	chr1	2536901	2537500	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6937	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
1233	chr1	2281521	2281780	+	0	NA	intron (NM_003036, intron 1 of 6)	CpG	53331	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
85057	chr16	31996351	31996600	+	0	NA	Intergenic	Intergenic	122668	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
134995	chr2	152716971	152719750	+	0	NA	promoter-TSS (NM_152522)	promoter-TSS (NM_152522)	36	NR_146427	151188		NM_152522	ENSG00000177917	ARL6IP6	AIP-6|AIP6|PFAAP1	ADP ribosylation factor like GTPase 6 interacting protein 6	protein-coding
225703	chr9	36577751	36578050	+	0	NA	intron (NM_001256693, intron 1 of 15)	AluSp|SINE|Alu	5005	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
22842	chr1	225447401	225447630	+	0	NA	Intergenic	Intergenic	-18660	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
149170	chr21	17818221	17820380	+	0	NA	promoter-TSS (NM_001100420)	promoter-TSS (NM_001100420)	56	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
183869	chr5	87269751	87270530	+	0	NA	intron (NM_022650, intron 1 of 24)	AluSx|SINE|Alu	1203	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
237843	chrX	130095571	130095730	+	0	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	14847	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
197795	chr6	87688921	87689780	+	0	NA	intron (NM_018064, intron 1 of 4)	AluSx|SINE|Alu	12883	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
153535	chr22	26577551	26577850	+	0	NA	intron (NM_001362923, intron 1 of 7)	AluSx|SINE|Alu	-12359	NM_001008566	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
9761	chr1	53368751	53368850	+	0	NA	Intergenic	Intergenic	40567	NR_131923	105378732		NR_131923	ENSG00000225675	LRP8-DT	LINC01771	LRP8 divergent transcript	ncRNA
86188	chr16	57899721	57900280	+	0	NA	intron (NM_001297, intron 29 of 32)	intron (NM_001297, intron 29 of 32)	71128	NM_001135639	1258		NM_001297	ENSG00000070729	CNGB1	CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45	cyclic nucleotide gated channel subunit beta 1	protein-coding
28119	chr10	43407001	43408200	+	0	NA	intron (NM_001098204, intron 1 of 3)	CpG	251	NM_001098206	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
151429	chr21	46129421	46129780	+	0	NA	3' UTR (NM_058175, exon 28 of 28)	3' UTR (NM_058175, exon 28 of 28)	-21775	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
36449	chr11	5686801	5687900	+	0	NA	Intergenic	AluYb8|SINE|Alu	-2276	NM_033093	85363		NM_033034	ENSG00000132256	TRIM5	RNF88|TRIM5alpha	tripartite motif containing 5	protein-coding
221718	chr8	127300601	127301000	+	0	NA	intron (NR_117100, intron 5 of 5)	intron (NR_117100, intron 5 of 5)	56163	NR_117099	103021164		NR_117099		CASC21	CARLO2|CARLo-2|LINC01244	cancer susceptibility 21	ncRNA
24578	chr1	245153951	245154150	+	0	NA	promoter-TSS (NM_018012)	promoter-TSS (NM_018012)	-935	NM_018012	55083		NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
70205	chr14	100565771	100566130	+	0	NA	intron (NM_001385102, intron 1 of 6)	intron (NM_001385102, intron 1 of 6)	2351	NM_001385100	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
159171	chr3	12812451	12812550	+	0	NA	intron (NM_012298, intron 3 of 12)	AluYb8|SINE|Alu	15820	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
86881	chr16	67982501	67982950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2226	NM_001129758	64180		NM_022357	ENSG00000141096	DPEP3	MBD3	dipeptidase 3	protein-coding
214777	chr7	151109371	151109730	+	0	NA	intron (NM_001350103, intron 1 of 18)	MLT1C|LTR|ERVL-MaLR	-5088	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
108340	chr18	67217571	67217930	+	0	NA	Intergenic	Intergenic	136166	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
108875	chr18	79391851	79392480	+	0	NA	Intergenic	AluJb|SINE|Alu	-3765	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
217273	chr8	27345771	27345930	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	20286	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
153652	chr22	28801851	28801950	+	0	NA	Intergenic	Intergenic	-1328	NM_005080	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
100723	chr17	63883521	63884150	+	0	NA	Intergenic	Intergenic	-1891	NM_022557	2689		NM_002059	ENSG00000136487	GH2	GH-V|GHB2|GHL|GHV|hGH-V	growth hormone 2	protein-coding
193744	chr6	31266501	31267300	+	0	NA	Intergenic	Intergenic	5192	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
39066	chr11	47977651	47977750	+	0	NA	Intergenic	L2c|LINE|L2	-2859	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
8748	chr1	42704101	42704500	+	0	NA	TTS (NM_004559)	TTS (NM_004559)	21164	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
75224	chr15	64854921	64855180	+	0	NA	intron (NM_001195059, intron 2 of 4)	intron (NM_001195059, intron 2 of 4)	13135	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
229139	chr9	114481201	114481730	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	21750	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
192595	chr6	25991151	25991250	+	0	NA	TTS (NM_006355)	TTS (NM_006355)	26587	NM_005325	3024		NM_005325	ENSG00000124610	H1-1	H1.1|H1A|H1F1|HIST1|HIST1H1A	H1.1 linker histone, cluster member	protein-coding
182251	chr5	57183301	57183750	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluJb|SINE|Alu	8077	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
169033	chr3	152693871	152694300	+	0	NA	Intergenic	L1PB1|LINE|L1	-141046	NM_002563	5028		NM_002563	ENSG00000169860	P2RY1	P2Y1|SARCC	purinergic receptor P2Y1	protein-coding
135756	chr2	169582601	169582800	+	0	NA	Intergenic	L1PA13|LINE|L1	-1651	NM_004792	9360		NM_004792	ENSG00000138398	PPIG	CARS-Cyp|CYP|SCAF10|SRCyp	peptidylprolyl isomerase G	protein-coding
28317	chr10	46282321	46283230	+	0	NA	Intergenic	CpG	-2075	NR_160731	105378577		NR_160731		LOC105378577	-	uncharacterized LOC105378577	ncRNA
35414	chr11	1401121	1402700	+	0	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	-8560	NM_001282218	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
110258	chr19	1795451	1796700	+	0	NA	intron (NR_047593, intron 17 of 28)	CpG	16201	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
233400	chr9	137560821	137561080	+	0	NA	intron (NM_001346372, intron 8 of 8)	AluSc8|SINE|Alu	9071	NM_032477	64975		NM_032477	ENSG00000182154	MRPL41	BMRP|MRP-L27|MRPL27|PIG3|RPML27|mL41	mitochondrial ribosomal protein L41	protein-coding
237221	chrX	109707301	109707600	+	0	NA	intron (NM_022977, intron 1 of 16)	intron (NM_022977, intron 1 of 16)	-25061	NR_158569	105373311		NR_158569		LOC105373311	-	uncharacterized LOC105373311	ncRNA
59031	chr13	20412871	20413180	+	0	NA	intron (NM_015974, intron 6 of 7)	L3|LINE|CR1	20821	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
149624	chr21	33400651	33401350	+	0	NA	Intergenic	LTR38B|LTR|ERV1	-1896	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
116427	chr19	18016371	18016930	+	0	NA	Intergenic	AluJo|SINE|Alu	8480	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
176166	chr4	83267471	83267630	+	0	NA	intron (NM_015697, intron 6 of 6)	intron (NM_015697, intron 6 of 6)	17248	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
185574	chr5	131386271	131386630	+	0	NA	intron (NM_001038702, intron 3 of 4)	intron (NM_001038702, intron 3 of 4)	122397	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
206132	chr7	27661221	27661480	+	0	NA	intron (NM_152740, intron 1 of 7)	AluJb|SINE|Alu	1533	NM_152740	11112		NM_152740	ENSG00000106049	HIBADH	NS5ATP1	3-hydroxyisobutyrate dehydrogenase	protein-coding
153902	chr22	30304451	30304850	+	0	NA	exon (NM_001204240, exon 2 of 9)	exon (NM_001204240, exon 2 of 9)	-15145	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
8607	chr1	41574051	41574730	+	0	NA	intron (NM_001127714, intron 4 of 7)	intron (NM_001127714, intron 4 of 7)	-89707	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
72959	chr15	40473071	40473230	+	0	NA	TTS (NM_130468)	TTS (NM_130468)	2166	NM_130468	113189		NM_130468	ENSG00000169105	CHST14	ATCS|D4ST1|EDSMC1|HNK1ST	carbohydrate sulfotransferase 14	protein-coding
161022	chr3	37922901	37923100	+	0	NA	intron (NM_005808, intron 1 of 6)	intron (NM_005808, intron 1 of 6)	-46404	NR_029499	407015		NR_029499	ENSG00000199075	MIR26A1	MIR26A|MIRN26A1|mir-26a-1	microRNA 26a-1	ncRNA
170452	chr3	185913801	185914740	+	0	NA	TTS (NM_004593)	TTS (NM_004593)	23744	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
202645	chr6	158767821	158768180	+	0	NA	intron (NM_003379, intron 11 of 12)	intron (NM_003379, intron 11 of 12)	-3247	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
61362	chr13	51125771	51126030	+	0	NA	intron (NR_102431, intron 1 of 4)	intron (NR_102431, intron 1 of 4)	-14672	NM_001351589	647166		NM_001351589	ENSG00000226792	C13orf42	LINC00371|LINC00372	chromosome 13 open reading frame 42	protein-coding
146520	chr20	49918801	49919430	+	0	NA	intron (NR_134564, intron 1 of 2)	AluSx|SINE|Alu	3293	NR_134564	105372653		NR_134564		LOC105372653	-	uncharacterized LOC105372653	ncRNA
226495	chr9	71766521	71767200	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	1653	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
149723	chr21	34129191	34130580	+	0	NA	intron (NM_032476, intron 2 of 2)	intron (NM_032476, intron 2 of 2)	-50792	NR_027267	114036		NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
1855	chr1	6358221	6359300	+	0	NA	intron (NM_007274, intron 1 of 8)	intron (NM_007274, intron 1 of 8)	169	NM_181866	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
46330	chr11	125493921	125494250	+	0	NA	intron (NM_005103, intron 1 of 9)	intron (NM_005103, intron 1 of 9)	-1129	NR_164146	403312		NM_203452	ENSG00000255537	LOC403312	-	putative uncharacterized protein MGC39545	ncRNA
127890	chr2	46181821	46182400	+	0	NA	intron (NM_005400, intron 14 of 14)	intron (NM_005400, intron 14 of 14)	-115297	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
223326	chr8	143822471	143822900	+	0	NA	intron (NM_001271099, intron 1 of 10)	intron (NM_001271099, intron 1 of 10)	6356	NM_001362896	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
238526	chrX	153692071	153692450	+	0	NA	intron (NM_005629, intron 4 of 12)	intron (NM_005629, intron 4 of 12)	2749	NM_001142806	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
143013	chr20	20711401	20711800	+	0	NA	intron (NM_020343, intron 1 of 39)	intron (NM_020343, intron 1 of 39)	1044	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
165507	chr3	100263271	100263630	+	0	NA	intron (NM_001199198, intron 1 of 18)	LTR7|LTR|ERV1	2458	NM_001199198	55773		NM_018309	ENSG00000036054	TBC1D23	NS4ATP1|PCH11	TBC1 domain family member 23	protein-coding
64216	chr14	23061911	23062530	+	0	NA	exon (NM_001164816, exon 9 of 12)	exon (NM_001164816, exon 9 of 12)	4560	NR_169511	105370705		NR_169511	ENSG00000288795	LOC105370705	-	collagen alpha-2(I) chain-like	ncRNA
100624	chr17	63598291	63599150	+	0	NA	Intergenic	L1MB8|LINE|L1	-2175	NM_016360	51204		NM_016360	ENSG00000136463	TACO1	CCDC44|MC4DN8	translational activator of cytochrome c oxidase I	protein-coding
193643	chr6	30828121	30829000	+	0	NA	intron (NR_130726, intron 1 of 1)	intron (NR_130726, intron 1 of 1)	2099	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
54359	chr12	89704601	89705000	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	4038	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
96384	chr17	40118901	40119130	+	0	NA	Intergenic	AluY|SINE|Alu	-2956	NM_001012241	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
121394	chr19	46936371	46937380	+	0	NA	intron (NM_004491, intron 2 of 6)	AluSx1|SINE|Alu	75878	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
173220	chr4	6904171	6904580	+	0	NA	Intergenic	Intergenic	-5069	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
177401	chr4	112280301	112280700	+	0	NA	intron (NM_052864, intron 1 of 1)	AluSx|SINE|Alu	5404	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
53607	chr12	68094271	68094630	+	0	NA	Intergenic	Intergenic	65290	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
74691	chr15	62164321	62165180	+	0	NA	exon (NM_001007595, exon 2 of 2)	exon (NM_001007595, exon 2 of 2)	535	NM_001007595	388125		NM_001007595	ENSG00000205502	C2CD4B	FAM148B|NLF2	C2 calcium dependent domain containing 4B	protein-coding
129408	chr2	68915151	68915650	+	0	NA	Intergenic	AluY|SINE|Alu	37493	NM_182536	200504		NM_182536	ENSG00000183607	GKN2	BRICD1B|GDDR|PRO813|TFIZ1|VLTI465	gastrokine 2	protein-coding
203593	chr7	928051	928150	+	0	NA	promoter-TSS (NM_001284310)	promoter-TSS (NM_001284310)	-884	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
141732	chr2	241870501	241870700	+	0	NA	intron (NM_173821, intron 1 of 1)	intron (NM_173821, intron 1 of 1)	871	NM_173821	285093		NM_173821	ENSG00000188011	RTP5	C2orf85|CXXC11|Z3CXXC5	receptor transporter protein 5 (putative)	protein-coding
57629	chr12	122506201	122507100	+	0	NA	intron (NR_036436, intron 9 of 9)	intron (NR_036436, intron 9 of 9)	-5718	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
66754	chr14	64517051	64517350	+	0	NA	intron (NR_110550, intron 3 of 3)	MIRb|SINE|MIR	-11987	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
156521	chr22	41405421	41406230	+	0	NA	Intergenic	Intergenic	23883	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
87403	chr16	70529221	70529980	+	0	NA	TTS (NR_037420)	TTS (NR_037420)	101	NR_037420	100113402		NR_037420		SNORD111B	MIR3647	small nucleolar RNA, C/D box 111B	snoRNA
55182	chr12	100573571	100574400	+	0	NA	intron (NM_001303130, intron 1 of 8)	CpG	301	NM_174942	283431		NM_174942	ENSG00000139354	GAS2L3	G2L3	growth arrest specific 2 like 3	protein-coding
75712	chr15	68082121	68082580	+	0	NA	intron (NM_001320687, intron 2 of 14)	HAL1|LINE|L1	27774	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
146377	chr20	49280751	49280850	+	0	NA	TTS (NR_003695)	TTS (NR_003695)	117	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
90935	chr17	2613621	2613880	+	0	NA	intron (NM_000430, intron 1 of 10)	intron (NM_000430, intron 1 of 10)	20096	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
86206	chr16	58005051	58005500	+	0	NA	intron (NM_001204911, intron 2 of 3)	LTR13|LTR|ERVK	3868	NM_001204911	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
143319	chr20	25406371	25406530	+	0	NA	Intergenic	AluSq|SINE|Alu	-1223	NM_021067	9837		NM_021067	ENSG00000101003	GINS1	IMD55|PSF1	GINS complex subunit 1	protein-coding
186721	chr5	139250871	139251800	+	0	NA	Intergenic	Intergenic	-22417	NM_001282278	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
41053	chr11	65476671	65478200	+	0	NA	Intergenic	CpG	-20303	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
163126	chr3	50131171	50131330	+	0	NA	intron (NR_135301, intron 2 of 3)	AluJo|SINE|Alu	-23808	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
232141	chr9	134034471	134034830	+	0	NA	intron (NM_007371, intron 11 of 11)	intron (NM_007371, intron 11 of 11)	9169	NM_001355256	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
4017	chr1	18933901	18935080	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	22186	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
32788	chr10	104935651	104935950	+	0	NA	intron (NM_014978, intron 3 of 26)	L2b|LINE|L2	-269584	NR_104028	100505890		NR_104028	ENSG00000226387	SORCS3-AS1	-	SORCS3 antisense RNA 1	ncRNA
36813	chr11	9669401	9670000	+	0	NA	intron (NM_001297714, intron 1 of 10)	intron (NM_001297714, intron 1 of 10)	5623	NM_015055	23075		NM_015055	ENSG00000133789	SWAP70	HSPC321|SWAP-70	switching B cell complex subunit SWAP70	protein-coding
43509	chr11	78903351	78903450	+	0	NA	exon (NM_001098816, exon 7 of 34)	exon (NM_001098816, exon 7 of 34)	-328536	NM_001243251	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
27684	chr10	33120301	33121150	+	0	NA	Intergenic	L1MA10|LINE|L1	-3918	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
1557	chr1	3493571	3494100	+	0	NA	exon (NM_001409, exon 34 of 37)	exon (NM_001409, exon 34 of 37)	39170	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
165886	chr3	106205301	106205500	+	0	NA	Intergenic	AluY|SINE|Alu	-335999	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
155673	chr22	39036921	39037500	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-3654	NM_145298	200316		NM_145298	ENSG00000128394	APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	apolipoprotein B mRNA editing enzyme catalytic subunit 3F	protein-coding
197822	chr6	87740421	87740680	+	0	NA	Intergenic	(ATAT)n|Simple_repeat|Simple_repeat	-38317	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
80982	chr16	3961821	3962100	+	0	NA	TTS (NM_001116)	TTS (NM_001116)	-11516	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
128097	chr2	47906101	47907800	+	0	NA	promoter-TSS (NM_001190274)	promoter-TSS (NM_001190274)	-452	NM_001190274	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
58346	chr12	131576901	131577200	+	0	NA	Intergenic	Intergenic	71071	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
47527	chr12	4164471	4165250	+	0	NA	Intergenic	CpG	-108902	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
9996	chr1	55143701	55143930	+	0	NA	intron (NM_015306, intron 21 of 67)	intron (NM_015306, intron 21 of 67)	71549	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
77826	chr15	88633771	88634180	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1657	NR_130134	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
134482	chr2	143259301	143259830	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	130146	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
51015	chr12	49704721	49705070	+	0	NA	intron (NM_175736, intron 1 of 25)	MIRb|SINE|MIR	2510	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
56770	chr12	120165151	120165250	+	0	NA	intron (NM_006836, intron 16 of 57)	AluY|SINE|Alu	-9701	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
231459	chr9	131281151	131281800	+	0	NA	Intergenic	MIR3|SINE|MIR	-4965	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
101457	chr17	67454771	67455350	+	0	NA	intron (NM_181671, intron 1 of 9)	AluJr|SINE|Alu	-16429	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
219153	chr8	66432151	66433450	+	0	NA	intron (NM_144650, intron 1 of 13)	MIR3|SINE|MIR	296	NM_144650	137872		NM_144650	ENSG00000147576	ADHFE1	ADH8|HMFT2263|HOT	alcohol dehydrogenase iron containing 1	protein-coding
32123	chr10	101228651	101229430	+	0	NA	promoter-TSS (NR_029380)	promoter-TSS (NR_029380)	-80	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
190599	chr5	181160101	181162380	+	0	NA	Intergenic	Intergenic	6297	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
33747	chr10	122422001	122422980	+	0	NA	intron (NR_165165, intron 9 of 12)	L1MC4|LINE|L1	5525	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
179737	chr5	222951	223330	+	0	NA	intron (NM_001330758, intron 1 of 12)	intron (NM_001330758, intron 1 of 12)	4820	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
161944	chr3	46186951	46187400	+	0	NA	Intergenic	Intergenic	21138	NM_001295	1230		NM_001295	ENSG00000163823	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	C-C motif chemokine receptor 1	protein-coding
94035	chr17	27298521	27299250	+	0	NA	intron (NM_134265, intron 1 of 6)	AluJr4|SINE|Alu	4771	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
228294	chr9	98099371	98100230	+	0	NA	intron (NM_014788, intron 3 of 5)	intron (NM_014788, intron 3 of 5)	19422	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
169339	chr3	160032201	160032480	+	0	NA	TTS (NR_104132)	TTS (NR_104132)	11691	NR_104132	730109		NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
124872	chr2	8305671	8305830	+	0	NA	intron (NR_034135, intron 2 of 8)	intron (NR_034135, intron 2 of 8)	22669	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
176198	chr4	83535551	83536850	+	0	NA	promoter-TSS (NM_032717)	promoter-TSS (NM_032717)	92	NM_032717	84803		NM_032717	ENSG00000138678	GPAT3	AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1	glycerol-3-phosphate acyltransferase 3	protein-coding
4122	chr1	19323701	19324750	+	0	NA	intron (NR_109848, intron 3 of 9)	intron (NR_109848, intron 3 of 9)	11899	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
217540	chr8	29300301	29300500	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-37330	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
107041	chr18	32110851	32111150	+	0	NA	intron (NM_198128, intron 1 of 4)	AluY|SINE|Alu	18394	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
199912	chr6	127874271	127874430	+	0	NA	intron (NM_001164687, intron 1 of 5).2	Tigger2b_Pri|DNA|TcMar-Tigger	-19162	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
132991	chr2	111529671	111529830	+	0	NA	Intergenic	Intergenic	-34589	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
80791	chr16	3262871	3264000	+	0	NA	promoter-TSS (NR_033904)	promoter-TSS (NR_033904)	-333	NR_033904	283876		NR_033904	ENSG00000281005	LINC00921	-	long intergenic non-protein coding RNA 921	ncRNA
166260	chr3	112437251	112437950	+	0	NA	Intergenic	L1PA16|LINE|L1	61872	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
218025	chr8	38756521	38757730	+	0	NA	promoter-TSS (NM_001352796)	promoter-TSS (NM_001352796)	-150	NM_001352804	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
84082	chr16	29607051	29607850	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	6267	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
21470	chr1	205595171	205595930	+	0	NA	intron (NM_181644, intron 7 of 9)	intron (NM_181644, intron 7 of 9)	-26245	NR_152721	284578		NR_027086		MFSD4A-AS1	-	MFSD4A antisense RNA 1	ncRNA
167975	chr3	136714121	136714380	+	0	NA	intron (NM_005862, intron 1 of 33)	L1ME3B|LINE|L1	38128	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
155774	chr22	39239451	39239980	+	0	NA	intron (NM_002608, intron 1 of 6)	intron (NM_002608, intron 1 of 6)	1194	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
199283	chr6	111908501	111908700	+	0	NA	intron (NR_149099, intron 1 of 2)	L1PA2|LINE|L1	797	NR_149099	105377946		NR_149099		LINC02527	-	long intergenic non-protein coding RNA 2527	ncRNA
130647	chr2	86181801	86182000	+	0	NA	intron (NM_001100169, intron 1 of 14)	intron (NM_001100169, intron 1 of 14)	11208	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
90457	chr17	1378321	1378700	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	21712	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
200649	chr6	137033401	137034350	+	0	NA	intron (NM_001278724, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	10437	NM_001278722	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
32316	chr10	102169021	102170480	+	0	NA	Intergenic	AluYk3|SINE|Alu	17361	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
223415	chr8	143937521	143937780	+	0	NA	intron (NM_201383, intron 3 of 31)	intron (NM_201383, intron 3 of 31)	1947	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
85441	chr16	50546471	50546630	+	0	NA	Intergenic	Intergenic	-1846	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
26228	chr10	14587611	14589330	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	15931	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
81449	chr16	8879301	8879500	+	0	NA	Intergenic	AluSx|SINE|Alu	-10388	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
160942	chr3	36904421	36904950	+	0	NA	intron (NM_014831, intron 1 of 22)	intron (NM_014831, intron 1 of 22)	40369	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
136584	chr2	178114321	178114850	+	0	NA	intron (NM_152945, intron 1 of 9)	AluJb|SINE|Alu	2148	NM_152945	129831		NM_152945	ENSG00000155636	RBM45	DRB1|RB-1	RNA binding motif protein 45	protein-coding
157087	chr22	42621301	42622450	+	0	NA	intron (NM_001129819, intron 8 of 8)	intron (NM_001129819, intron 8 of 8)	6630	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
78148	chr15	90406271	90406430	+	0	NA	intron (NM_003870, intron 2 of 37)	AluY|SINE|Alu	18108	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
146093	chr20	47609071	47609230	+	0	NA	intron (NM_181659, intron 2 of 22)	L2c|LINE|L2	107263	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
54651	chr12	93048801	93049000	+	0	NA	intron (NR_040096, intron 3 of 4)	L3|LINE|CR1	-119605	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
50385	chr12	47250171	47250530	+	0	NA	Intergenic	L1PB1|LINE|L1	-33907	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
45817	chr11	119354601	119354800	+	0	NA	TTS (NM_004205)	TTS (NM_004205)	-7995	NM_015645	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
31881	chr10	100264651	100265030	+	0	NA	intron (NM_001303407, intron 1 of 12)	AluJb|SINE|Alu	2798	NM_018294	55280		NM_018294	ENSG00000095485	CWF19L1	C19L1|SCAR17|hDrn1	CWF19 like cell cycle control factor 1	protein-coding
35889	chr11	2403101	2403300	+	0	NA	exon (NM_005706, exon 3 of 3)	exon (NM_005706, exon 3 of 3)	2450	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
75516	chr15	66493771	66493930	+	0	NA	3' UTR (NM_001329613, exon 2 of 2)	3' UTR (NM_001329613, exon 2 of 2)	3184	NR_039737	100616149		NR_039737	ENSG00000266589	MIR4512	-	microRNA 4512	ncRNA
128373	chr2	55020851	55021580	+	0	NA	intron (NM_153828, intron 1 of 6)	Tigger8|DNA|TcMar-Tigger	-10943	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133573	chr2	121532851	121532950	+	0	NA	intron (NM_001142274, intron 2 of 37)	intron (NM_001142274, intron 2 of 37)	2020	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
223688	chr8	144417771	144418530	+	0	NA	Intergenic	Intergenic	-1306	NM_130849	55630		NM_017767	ENSG00000147804	SLC39A4	AEZ|AWMS2|ZIP4	solute carrier family 39 member 4	protein-coding
206513	chr7	33904201	33904530	+	0	NA	promoter-TSS (NM_133468)	promoter-TSS (NM_133468)	-550	NM_133468	168667		NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
220993	chr8	115576401	115576680	+	0	NA	intron (NM_001282903, intron 5 of 6)	MIRc|SINE|MIR	91473	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
72085	chr15	28911301	28911700	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	-10137	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
74399	chr15	58926571	58926730	+	0	NA	intron (NR_135043, intron 1 of 18)	AluSg|SINE|Alu	7029	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
209710	chr7	86898351	86898450	+	0	NA	intron (NM_001142749, intron 18 of 21)	L1MB8|LINE|L1	67499	NM_152748	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
80266	chr16	2228851	2229530	+	0	NA	intron (NM_004424, intron 2 of 13)	intron (NM_004424, intron 2 of 13)	5599	NM_004424	1877		NM_004424	ENSG00000167967	E4F1	E4F	E4F transcription factor 1	protein-coding
31188	chr10	91200051	91200430	+	0	NA	intron (NM_001257101, intron 1 of 9)	LTR16C|LTR|ERVL	-19911	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
216009	chr8	8998751	8998850	+	0	NA	Intergenic	Intergenic	-4097	NM_153332	90459		NM_153332	ENSG00000104626	ERI1	3'HEXO|HEXO|HXAL|SEMDGC|SEMDGS|THEX1	exoribonuclease 1	protein-coding
195862	chr6	41533301	41533900	+	0	NA	intron (NR_126415, intron 1 of 1)	intron (NR_126415, intron 1 of 1)	12643	NR_126417	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
203020	chr6	163460271	163461000	+	0	NA	intron (NM_206854, intron 2 of 6)	intron (NM_206854, intron 2 of 6)	45917	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
113521	chr19	10115821	10116580	+	0	NA	TTS (NM_002566)	TTS (NM_002566)	3699	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
236928	chrX	97155871	97156030	+	0	NA	intron (NM_007309, intron 22 of 26)	intron (NM_007309, intron 22 of 26)	272042	NM_013347	29935		NM_013347	ENSG00000204086	RPA4	HSU24186	replication protein A4	protein-coding
57321	chr12	121680751	121681050	+	0	NA	Intergenic	AluSq|SINE|Alu	-8256	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
23682	chr1	231412921	231413380	+	0	NA	intron (NM_001377261, intron 1 of 3)	AluSz|SINE|Alu	9137	NM_001377261	54583		NM_022051	ENSG00000135766	EGLN1	C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia inducible factor 1	protein-coding
78841	chr15	99806201	99808050	+	0	NA	promoter-TSS (NR_003260)	promoter-TSS (NR_003260)	102	NR_135737	400464		NM_001013670		LOC400464	-	ubiquitin conjugating enzyme E2 Q2 pseudogene	pseudo
190320	chr5	179616951	179617050	+	0	NA	intron (NM_001364247, intron 9 of 12)	intron (NM_001364247, intron 9 of 12)	6401	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
22211	chr1	212477201	212477950	+	0	NA	Intergenic	AluJb|SINE|Alu	44655	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
116652	chr19	18338901	18339100	+	0	NA	Intergenic	Intergenic	-1598	NM_001329477	54858		NM_017712	ENSG00000130517	PGPEP1	PAP-I|PGI|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
152189	chr22	20107121	20107380	+	0	NA	intron (NM_022720, intron 11 of 13)	intron (NM_022720, intron 11 of 13)	7501	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
64524	chr14	24430801	24431300	+	0	NA	intron (NM_015299, intron 2 of 7)	intron (NM_015299, intron 2 of 7)	1096	NM_015299	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
95080	chr17	33674671	33674900	+	0	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	-141025	NR_037584	100506677		NR_037584	ENSG00000265544	AA06	AA02|AA04|AA05	uncharacterized LOC100506677	pseudo
221540	chr8	124721221	124721480	+	0	NA	intron (NM_001363300, intron 1 of 12)	intron (NM_001363300, intron 1 of 12)	7123	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
183906	chr5	87384351	87384600	+	0	NA	intron (NM_022650, intron 21 of 24)	intron (NM_022650, intron 21 of 24)	28429	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
139680	chr2	227238351	227238450	+	0	NA	intron (NR_102371, intron 9 of 13)	intron (NR_102371, intron 9 of 13)	73776	NM_000091	1285		NM_000091	ENSG00000169031	COL4A3	ATS2|ATS3|ATS3A|ATS3B|BFH2	collagen type IV alpha 3 chain	protein-coding
210791	chr7	100826871	100828080	+	0	NA	promoter-TSS (NM_004444)	promoter-TSS (NM_004444)	48	NM_004444	2050		NM_004444	ENSG00000196411	EPHB4	CMAVM2|HFASD|HTK|LMPHM7|MYK1|TYRO11	EPH receptor B4	protein-coding
239186	chrY	12621571	12621980	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-40592	NR_001545	64595		NR_001545	ENSG00000114374	TTTY15	NCRNA00138	testis expressed transcript, Y-linked 15	ncRNA
31723	chr10	97686491	97688350	+	0	NA	promoter-TSS (NM_021732)	promoter-TSS (NM_021732)	-179	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
120143	chr19	42216901	42218580	+	0	NA	promoter-TSS (NR_073046)	promoter-TSS (NR_073046)	-63	NR_073050	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
226778	chr9	76575571	76575730	+	0	NA	Intergenic	Intergenic	75017	NM_001097636	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
52999	chr12	57511251	57511730	+	0	NA	intron (NM_004990, intron 11 of 20)	AluJo|SINE|Alu	-1198	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
153427	chr22	25057101	25057650	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	29401	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
45034	chr11	117030621	117031100	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	67568	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
106885	chr18	24436821	24437080	+	0	NA	intron (NM_018439, intron 4 of 10)	intron (NM_018439, intron 4 of 10)	10280	NM_018439	55364		NM_018439	ENSG00000154059	IMPACT	RWDD5	impact RWD domain protein	protein-coding
170627	chr3	187023821	187024230	+	0	NA	intron (NM_003032, intron 1 of 6)	intron (NM_003032, intron 1 of 6)	2170	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
202308	chr6	157258621	157259480	+	0	NA	Intergenic	Intergenic	64469	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
116902	chr19	18775971	18776650	+	0	NA	intron (NM_015321, intron 13 of 13)	intron (NM_015321, intron 13 of 13)	14995	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
181867	chr5	54234571	54234750	+	0	NA	intron (NM_019087, intron 1 of 4)	intron (NM_019087, intron 1 of 4)	75913	NM_019087	54622		NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
207480	chr7	44635151	44635650	+	0	NA	intron (NM_001363523, intron 2 of 23)	intron (NM_001363523, intron 2 of 23)	28773	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
183656	chr5	80270171	80271150	+	0	NA	Intergenic	Intergenic	-14612	NR_126060	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
210460	chr7	100129371	100129530	+	0	NA	TTS (NM_203397)	TTS (NM_203397)	2483	NM_203397	255374		NM_203397	ENSG00000214309	MBLAC1	-	metallo-beta-lactamase domain containing 1	protein-coding
147207	chr20	57379401	57379900	+	0	NA	TTS (NM_003610)	TTS (NM_003610)	-11746	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
139569	chr2	224940601	224941000	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	6249	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
209567	chr7	77354221	77355100	+	0	NA	intron (NM_001350896, intron 16 of 29)	Tigger13a|DNA|TcMar-Tigger	-60538	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
38920	chr11	47428601	47428800	+	0	NA	Intergenic	MER31B|LTR|ERV1	-2261	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
93686	chr17	19362271	19364100	+	0	NA	promoter-TSS (NM_001321216)	promoter-TSS (NM_001321216)	-447	NM_001243473	27077		NM_015681	ENSG00000108641	B9D1	B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1	B9 domain containing 1	protein-coding
65662	chr14	52467721	52467980	+	0	NA	intron (NM_020784, intron 16 of 20)	L1MB2|LINE|L1	84655	NM_020784	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
2928	chr1	11738971	11739200	+	0	NA	intron (NM_001040195, intron 1 of 3)	MIRb|SINE|MIR	2949	NM_020350	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
58508	chr12	132175651	132176400	+	0	NA	Intergenic	Intergenic	13670	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
167641	chr3	129604951	129605990	+	0	NA	exon (NM_015103, exon 1 of 36)	exon (NM_015103, exon 1 of 36)	1206	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
235261	chrX	41716851	41716950	+	0	NA	intron (NM_001126055, intron 5 of 24)	LTR10B|LTR|ERV1	-7281	NM_080817	27197		NM_080817	ENSG00000171657	GPR82	-	G protein-coupled receptor 82	protein-coding
150185	chr21	39308051	39308350	+	0	NA	intron (NM_033656, intron 4 of 40)	AluSz|SINE|Alu	5432	NM_033656	54014		NM_018963	ENSG00000185658	BRWD1	C21orf107|CILD51|DCAF19|N143|WDR9|WRD9	bromodomain and WD repeat domain containing 1	protein-coding
229248	chr9	115069651	115069750	+	0	NA	intron (NM_002160, intron 10 of 27)	(TCCC)n|Simple_repeat|Simple_repeat	48457	NM_002160	3371		NM_002160	ENSG00000041982	TNC	150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C	tenascin C	protein-coding
190577	chr5	180907951	180908250	+	0	NA	intron (NM_001159709, intron 2 of 7)	L1PA2|LINE|L1	-1464	NM_001159710	79908		NM_024850	ENSG00000113303	BTNL8	BTN9.2	butyrophilin like 8	protein-coding
135552	chr2	164896751	164896850	+	0	NA	Intergenic	Charlie29a|DNA|hAT-Charlie	-54724	NM_001278460	22837		NM_014900	ENSG00000082438	COBLL1	COBLR1	cordon-bleu WH2 repeat protein like 1	protein-coding
221273	chr8	122798571	122800000	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	17630	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
173118	chr4	6562751	6563050	+	0	NA	intron (NM_001206994, intron 1 of 9)	intron (NM_001206994, intron 1 of 9)	899	NM_001206994	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
118708	chr19	38221201	38221780	+	0	NA	intron (NM_001363579, intron 3 of 11)	AluSx|SINE|Alu	2732	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
237433	chrX	119674921	119675180	+	0	NA	intron (NM_145799, intron 2 of 10)	FLAM_C|SINE|Alu	18118	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
101622	chr17	68206901	68207350	+	0	NA	intron (NM_001346471, intron 1 of 6)	intron (NM_001346471, intron 1 of 6)	996	NM_001346472	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
16231	chr1	153942021	153942280	+	0	NA	intron (NM_014856, intron 5 of 27)	intron (NM_014856, intron 5 of 27)	3106	NM_001367466	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
142864	chr20	17662301	17662700	+	0	NA	intron (NM_004587, intron 1 of 24)	intron (NM_004587, intron 1 of 24)	19742	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
115783	chr19	16362501	16362700	+	0	NA	intron (NR_047665, intron 21 of 22)	AluJb|SINE|Alu	37774	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
120392	chr19	43699171	43700000	+	0	NA	Intergenic	CpG	-16491	NM_019612	56269		NM_019612	ENSG00000124449	IRGC	CINEMA|IFGGE|IRGC1|Iigp5|R30953_1	immunity related GTPase cinema	protein-coding
212518	chr7	128789921	128790180	+	0	NA	Intergenic	MER41A|LTR|ERV1	-1388	NM_001367762	64753		NM_022742	ENSG00000128596	CCDC136	NAG6	coiled-coil domain containing 136	protein-coding
42208	chr11	68025201	68025900	+	0	NA	intron (NM_001030010, intron 7 of 8)	intron (NM_001030010, intron 7 of 8)	-5131	NM_002496	4728		NM_002496	ENSG00000110717	NDUFS8	CI-23k|CI23KD|MC1DN2|TYKY	NADH:ubiquinone oxidoreductase core subunit S8	protein-coding
90610	chr17	1634271	1634980	+	0	NA	non-coding (NR_102409, exon 11 of 11).2	non-coding (NR_102409, exon 11 of 11).2	-5791	NM_152346	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
109633	chr19	992951	993050	+	0	NA	intron (NM_001372085, intron 10 of 11)	intron (NM_001372085, intron 10 of 11)	-7419	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
202971	chr6	161265971	161266130	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	8011	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
228972	chr9	113521721	113522150	+	0	NA	intron (NM_144488, intron 17 of 25)	intron (NM_144488, intron 17 of 25)	-14676	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
7103	chr1	32111271	32112130	+	0	NA	intron (NM_012316, intron 1 of 13)	intron (NM_012316, intron 1 of 13)	3644	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
140734	chr2	234453371	234453750	+	0	NA	intron (NR_146988, intron 1 of 2)	MIR3|SINE|MIR	1035	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
33969	chr10	124650151	124651880	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-53013	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
189091	chr5	170293321	170294600	+	0	NA	intron (NM_005565, intron 1 of 20)	MIR|SINE|MIR	3817	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
115684	chr19	16191371	16191530	+	0	NA	3' UTR (NM_014077, exon 4 of 4)	3' UTR (NM_014077, exon 4 of 4)	6040	NM_014077	26017		NM_014077	ENSG00000105058	FAM32A	OTAG-12|OTAG12	family with sequence similarity 32 member A	protein-coding
77447	chr15	84331651	84331830	+	0	NA	Intergenic	HERVIP10B3-int|LTR|ERV1	-90779	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
238722	chrX	154183751	154184250	+	0	NA	intron (NM_000513, intron 1 of 5)	intron (NM_000513, intron 1 of 5)	1382	NM_001330067	101060233		NM_001330067	ENSG00000269433	OPN1MW3	GCP|GOP|OPN1MW|OPN1MW2	opsin 1, medium wave sensitive 3	protein-coding
66046	chr14	58317671	58317830	+	0	NA	intron (NM_023000, intron 5 of 23)	AluJb|SINE|Alu	19195	NM_002892	5926		NM_002892	ENSG00000032219	ARID4A	RBBP-1|RBBP1|RBP-1|RBP1	AT-rich interaction domain 4A	protein-coding
199859	chr6	127790851	127791380	+	0	NA	intron (NM_001010923, intron 4 of 5).2	MER52A|LTR|ERV1	64073	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
148881	chr21	8451711	8452230	+	0	NA	Intergenic	AluSz|SINE|Alu	10824	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
146399	chr20	49303301	49303830	+	0	NA	Intergenic	Intergenic	22882	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
99655	chr17	50705721	50706200	+	0	NA	intron (NM_052855, intron 1 of 4)	intron (NM_052855, intron 1 of 4)	1954	NM_052855	91369		NM_052855	ENSG00000154945	ANKRD40	-	ankyrin repeat domain 40	protein-coding
181438	chr5	40835001	40835980	+	0	NA	promoter-TSS (NR_159993)	promoter-TSS (NR_159993)	-268	NM_000997	6167		NM_000997	ENSG00000145592	RPL37	L37|eL37	ribosomal protein L37	protein-coding
188635	chr5	157221201	157221400	+	0	NA	intron (NM_005546, intron 5 of 16)	MER20B|DNA|hAT-Charlie	40460	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
25107	chr10	3947071	3947230	+	0	NA	Intergenic	(CTTT)n|Simple_repeat|Simple_repeat	-44010	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
111890	chr19	4668051	4668800	+	0	NA	intron (NM_019107, intron 2 of 5)	intron (NM_019107, intron 2 of 5)	1917	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
67533	chr14	71012171	71012330	+	0	NA	intron (NM_001308160, intron 8 of 33)	intron (NM_001308160, intron 8 of 33)	104791	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
151810	chr22	18219771	18219930	+	0	NA	Intergenic	CpG	-13941	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
125981	chr2	25285401	25286930	+	0	NA	intron (NR_135490, intron 3 of 23)	intron (NR_135490, intron 3 of 23)	-33850	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
94258	chr17	28690871	28691030	+	0	NA	exon (NM_001320755, exon 28 of 38)	exon (NM_001320755, exon 28 of 38)	19154	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
141811	chr20	328551	329600	+	0	NA	3' UTR (NM_006943, exon 1 of 1)	3' UTR (NM_006943, exon 1 of 1)	3504	NM_006943	6666		NM_006943	ENSG00000177732	SOX12	SOX22	SRY-box transcription factor 12	protein-coding
140633	chr2	233467301	233467700	+	0	NA	intron (NM_001377259, intron 26 of 27)	intron (NM_001377259, intron 26 of 27)	22398	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
216303	chr8	12609221	12609480	+	0	NA	intron (NR_047662, intron 2 of 8)	ERVL-B4-int|LTR|ERVL	56261	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
141536	chr2	241308821	241309080	+	0	NA	intron (NM_005336, intron 1 of 27)	L2a|LINE|L2	-6237	NM_006155	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
56934	chr12	120457071	120457830	+	0	NA	intron (NM_176818, intron 3 of 3)	intron (NM_176818, intron 3 of 3)	11006	NR_033684	283459		NM_176818	ENSG00000257218	GATC	15E1.2|COXPD42	glutamyl-tRNA amidotransferase subunit C	protein-coding
109734	chr19	1094671	1097530	+	0	NA	promoter-TSS (NM_002695)	promoter-TSS (NM_002695)	-708	NM_001316324	5434		NM_002695	ENSG00000099817	POLR2E	RPABC1|RPB5|XAP4|hRPB25|hsRPB5	RNA polymerase II, I and III subunit E	protein-coding
117394	chr19	19605621	19606530	+	0	NA	intron (NM_025245, intron 1 of 7)	intron (NM_025245, intron 1 of 7)	12612	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
62440	chr13	99324921	99325550	+	0	NA	intron (NR_026644, intron 6 of 8)	AluY|SINE|Alu	-17836	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
157314	chr22	44567821	44568180	+	0	NA	Intergenic	Intergenic	-1340	NR_028410	388910		NM_001012986	ENSG00000187012	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
158880	chr3	9889371	9889550	+	0	NA	Intergenic	Intergenic	-1150	NM_032492	84522		NM_032492	ENSG00000171135	JAGN1	GL009|SCN6	jagunal homolog 1	protein-coding
29203	chr10	68982801	68983000	+	0	NA	3' UTR (NM_001256910, exon 15 of 15)	3' UTR (NM_001256910, exon 15 of 15)	-5903	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
17268	chr1	156391371	156391530	+	0	NA	Intergenic	Intergenic	22239	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
171454	chr3	196332051	196332350	+	0	NA	intron (NM_138461, intron 1 of 4)	AluY|SINE|Alu	6188	NM_138461	116211		NM_138461	ENSG00000145107	TM4SF19	OCTM4	transmembrane 4 L six family member 19	protein-coding
160024	chr3	18415771	18416330	+	0	NA	exon (NM_001322872, exon 5 of 12)	exon (NM_001322872, exon 5 of 12)	9289	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
133240	chr2	113248821	113249580	+	0	NA	intron (NM_013952, intron 2 of 11)	intron (NM_013952, intron 2 of 11)	12931	NR_015377	654433		NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
128079	chr2	47885151	47885780	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluSz6|SINE|Alu	3254	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
180206	chr5	1506401	1506800	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	4256	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
99214	chr17	49569741	49571130	+	0	NA	intron (NR_103773, intron 1 of 2)	intron (NR_103773, intron 1 of 2)	3629	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
188552	chr5	156932351	156932730	+	0	NA	intron (NM_001146726, intron 4 of 7)	intron (NM_001146726, intron 4 of 7)	30686	NM_001146726	91937		NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T cell immunoglobulin and mucin domain containing 4	protein-coding
130668	chr2	86335871	86336030	+	0	NA	intron (NM_001164730, intron 1 of 6)	intron (NM_001164730, intron 1 of 6)	1676	NM_001164731	65055		NM_022912	ENSG00000068615	REEP1	C2orf23|DSMA6|HMN5B|HMND12|HMNR6|SPG31|Yip2a	receptor accessory protein 1	protein-coding
219615	chr8	80101571	80101930	+	0	NA	intron (NM_001287144, intron 1 of 5)	MSTB|LTR|ERVL-MaLR	-20919	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
171040	chr3	195203721	195204430	+	0	NA	intron (NM_001308069, intron 2 of 3)	AluSg4|SINE|Alu	43845	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
156958	chr22	42365101	42365300	+	0	NA	intron (NR_120595, intron 1 of 1)	intron (NR_120595, intron 1 of 1)	4008	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
148387	chr20	63904371	63904530	+	0	NA	intron (NM_025219, intron 1 of 4)	intron (NM_025219, intron 1 of 4)	9324	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
15685	chr1	150970971	150971530	+	0	NA	intron (NM_181746, intron 1 of 10)	intron (NM_181746, intron 1 of 10)	3585	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
21301	chr1	204491421	204491680	+	0	NA	intron (NM_001377335, intron 1 of 35)	AluJr4|SINE|Alu	3255	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
69469	chr14	95156701	95158350	+	0	NA	promoter-TSS (NR_015415)	promoter-TSS (NR_015415)	4	NM_177438	23405		NM_030621	ENSG00000100697	DICER1	DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2|aviD	dicer 1, ribonuclease III	protein-coding
70929	chr14	104389071	104390430	+	0	NA	Intergenic	Intergenic	166166	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
25309	chr10	6213221	6213700	+	0	NA	intron (NM_001314063, intron 1 of 15)	AluJr|SINE|Alu	10528	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
113345	chr19	8654351	8655000	+	0	NA	promoter-TSS (NM_001378601)	promoter-TSS (NM_001378601)	-902	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
96343	chr17	40062401	40064230	+	0	NA	intron (NM_199334, intron 1 of 8)	CpG	350	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
113870	chr19	10662971	10663730	+	0	NA	intron (NM_153464, intron 1 of 17)	AluY|SINE|Alu	9004	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
136036	chr2	172481551	172481850	+	0	NA	intron (NM_001316306, intron 11 of 25)	intron (NM_001316306, intron 11 of 25)	-15678	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
21972	chr1	209207751	209207850	+	0	NA	Intergenic	Intergenic	-117656	NR_135085	105372897		NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
165550	chr3	101391551	101391850	+	0	NA	intron (NM_001282803, intron 3 of 20)	L1M2|LINE|L1	-71125	NM_016247	50939		NM_016247	ENSG00000081148	IMPG2	IPM200|RP56|SPACRCAN|VMD5	interphotoreceptor matrix proteoglycan 2	protein-coding
141317	chr2	240457501	240457700	+	0	NA	promoter-TSS (NR_161169)	promoter-TSS (NR_161169)	-900	NR_161169	100130449		NR_024014	ENSG00000218416	GPC1-AS1	-	GPC1 antisense RNA 1	ncRNA
182087	chr5	55993301	55994200	+	0	NA	intron (NR_157112, intron 1 of 17)	intron (NR_157112, intron 1 of 17)	1213	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
219488	chr8	73870051	73870430	+	0	NA	intron (NR_073119, intron 1 of 5)	intron (NR_073119, intron 1 of 5)	8622	NR_073120	55284		NM_018299	ENSG00000104343	UBE2W	UBC-16|UBC16	ubiquitin conjugating enzyme E2 W	protein-coding
156608	chr22	41560371	41560900	+	0	NA	promoter-TSS (NM_014460)	promoter-TSS (NM_014460)	248	NR_134631	105373044		NR_134631	ENSG00000286491	LOC105373044	-	uncharacterized LOC105373044	ncRNA
94778	chr17	30968321	30969180	+	0	NA	Intergenic	L2|LINE|L2	-2289	NM_197939	84282		NM_032322	ENSG00000181481	RNF135	L13|MMFD|REUL|Riplet	ring finger protein 135	protein-coding
90041	chr16	89911621	89912230	+	0	NA	TTS (NM_014972)	TTS (NM_014972)	-6937	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
163242	chr3	50274221	50274700	+	0	NA	exon (NM_001290060, exon 11 of 17)	exon (NM_001290060, exon 11 of 17)	1224	NR_106932	102465526		NR_106932	ENSG00000283848	MIR6872	hsa-mir-6872	microRNA 6872	ncRNA
76265	chr15	74072301	74072500	+	0	NA	intron (NM_001038640, intron 13 of 17)	intron (NM_001038640, intron 13 of 17)	10150	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
81813	chr16	11553001	11553400	+	0	NA	intron (NM_001136473, intron 3 of 4)	AluSx|SINE|Alu	-25953	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
135635	chr2	168239401	168240000	+	0	NA	intron (NM_013233, intron 1 of 17)	L2c|LINE|L2	7895	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
31206	chr10	91245951	91246250	+	0	NA	intron (NM_032373, intron 3 of 9)	L2a|LINE|L2	25437	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
223293	chr8	143768071	143768530	+	0	NA	intron (NM_001381874, intron 3 of 13)	L1ME3A|LINE|L1	-7792	NR_136279	105375800		NR_136279		LOC105375800	-	SREBF pathway regulator in golgi 1 pseudogene	pseudo
74029	chr15	52227201	52227740	+	0	NA	intron (NM_018728, intron 25 of 40)	AluSc8|SINE|Alu	-36078	NM_016194	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
76290	chr15	74137201	74137400	+	0	NA	TTS (NM_020851)	TTS (NM_020851)	6714	NM_020851	57611		NM_020851	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine rich repeat 2	protein-coding
80480	chr16	2704901	2705600	+	0	NA	intron (NM_018992, intron 5 of 5)	intron (NM_018992, intron 5 of 5)	14974	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
187189	chr5	140657601	140657800	+	0	NA	intron (NM_006083, intron 10 of 19)	intron (NM_006083, intron 10 of 19)	-7099	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
14727	chr1	145978771	145980980	+	0	NA	Intergenic	Intergenic	15185	NM_032305	84265		NM_032305	ENSG00000121851	POLR3GL	RPC32HOM|SOFM|flj32422	RNA polymerase III subunit GL	protein-coding
57091	chr12	121032021	121032280	+	0	NA	intron (NM_198213, intron 2 of 4)	AluSx1|SINE|Alu	7092	NM_003733	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
94941	chr17	32065751	32066250	+	0	NA	Intergenic	Intergenic	25664	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
233457	chr9	137650171	137650800	+	0	NA	intron (NM_001354612, intron 1 of 8)	L1M4|LINE|L1	31480	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
217718	chr8	30227621	30228100	+	0	NA	Intergenic	Intergenic	71491	NM_006571	10671		NM_006571	ENSG00000104671	DCTN6	WS-3|WS3|p27	dynactin subunit 6	protein-coding
91976	chr17	7413401	7413850	+	0	NA	intron (NM_020795, intron 2 of 6)	intron (NM_020795, intron 2 of 6)	5780	NM_020795	57555		NM_020795	ENSG00000169992	NLGN2	-	neuroligin 2	protein-coding
103459	chr17	78317421	78317680	+	0	NA	Intergenic	Intergenic	-39058	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
128046	chr2	47570771	47570930	+	0	NA	5' UTR (NM_022055, exon 1 of 2)	5' UTR (NM_022055, exon 1 of 2)	135	NM_022055	56660		NM_022055	ENSG00000184261	KCNK12	K2p12.1|THIK-2|THIK2	potassium two pore domain channel subfamily K member 12	protein-coding
204975	chr7	6383801	6384000	+	0	NA	intron (NM_018890, intron 1 of 6)	AluSp|SINE|Alu	9373	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
84553	chr16	30568001	30569500	+	0	NA	TTS (NM_145271)	TTS (NM_145271)	3657	NM_145271	146542		NM_145271	ENSG00000229809	ZNF688	-	zinc finger protein 688	protein-coding
99722	chr17	50903671	50905630	+	0	NA	Intergenic	Intergenic	-36672	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
179312	chr4	177441701	177443350	+	0	NA	promoter-TSS (NM_000027)	promoter-TSS (NM_000027)	-22	NM_001171988	175		NM_000027	ENSG00000038002	AGA	AGU|ASRG|GA	aspartylglucosaminidase	protein-coding
116535	chr19	18198051	18198750	+	0	NA	intron (NM_002866, intron 4 of 4)	L2c|LINE|L2	5182	NM_032683	84769		NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial inner membrane protein like 2	protein-coding
144703	chr20	36473751	36474330	+	0	NA	intron (NM_183006, intron 1 of 6)	MIR|SINE|MIR	12245	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
19050	chr1	169706801	169707230	+	0	NA	intron (NM_000655, intron 4 of 8)	intron (NM_000655, intron 4 of 8)	1842	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
18002	chr1	160541621	160542550	+	0	NA	3' UTR (NM_001184879, exon 8 of 8)	3' UTR (NM_001184879, exon 8 of 8)	-18830	NM_001184714	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
151204	chr21	45136001	45136400	+	0	NA	intron (NR_027673, intron 3 of 12)	intron (NR_027673, intron 3 of 12)	-16330	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
83416	chr16	27226521	27226830	+	0	NA	intron (NM_145080, intron 6 of 7)	intron (NM_145080, intron 6 of 7)	22700	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
101400	chr17	67376701	67378200	+	0	NA	5' UTR (NM_012417, exon 1 of 9)	5' UTR (NM_012417, exon 1 of 9)	169	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
59945	chr13	31198851	31198950	+	0	NA	Intergenic	Intergenic	-1075	NM_194318	145173		NM_194318	ENSG00000187676	B3GLCT	B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	beta 3-glucosyltransferase	protein-coding
124428	chr19	58470771	58472030	+	0	NA	exon (NM_014347, exon 4 of 4)	exon (NM_014347, exon 4 of 4)	4320	NM_014347	25799		NM_014347	ENSG00000083812	ZNF324	ZF5128|ZNF324A	zinc finger protein 324	protein-coding
238895	chrX	154596351	154596650	+	0	NA	Intergenic	Intergenic	11346	NM_001327	1485		NM_001327	ENSG00000184033	CTAG1B	CT6.1|CTAG|CTAG1|ESO1|LAGE-2|LAGE2B|NY-ESO-1	cancer/testis antigen 1B	protein-coding
130940	chr2	87501771	87502330	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	32100	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
198743	chr6	108560401	108561700	+	0	NA	5' UTR (NM_001455, exon 1 of 3)	5' UTR (NM_001455, exon 1 of 3)	133	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
73541	chr15	43831501	43831700	+	0	NA	intron (NM_024908, intron 2 of 12)	AluSz|SINE|Alu	4598	NM_001167941	79968		NM_024908	ENSG00000092470	WDR76	CDW14|CMR1	WD repeat domain 76	protein-coding
181361	chr5	40514771	40515330	+	0	NA	Intergenic	L1PA10|LINE|L1	-164865	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
14915	chr1	147247321	147247750	+	0	NA	intron (NM_001348452, intron 1 of 22)	MSTB1|LTR|ERVL-MaLR	4393	NM_001348452	9557		NM_004284	ENSG00000131778	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1 like	protein-coding
214799	chr7	151171521	151171780	+	0	NA	Intergenic	AluJb|SINE|Alu	-4102	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
12478	chr1	107926771	107926930	+	0	NA	intron (NM_006113, intron 1 of 26)	L1M1|LINE|L1	29627	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
30153	chr10	74174321	74174780	+	0	NA	intron (NM_001369123, intron 1 of 9)	MER5A1|DNA|hAT-Charlie	-2213	NM_001123	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
29726	chr10	72085721	72086400	+	0	NA	TTS (NM_001134434)	TTS (NM_001134434)	2491	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
230190	chr9	127800051	127800150	+	0	NA	Intergenic	AluJo|SINE|Alu	-2758	NM_001288803	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
144604	chr20	35818201	35818680	+	0	NA	intron (NM_016436, intron 2 of 17)	AluJo|SINE|Alu	46425	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
182314	chr5	58891251	58892050	+	0	NA	Intergenic	Intergenic	108248	NM_001197223	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
41318	chr11	65895051	65895530	+	0	NA	intron (NR_125339, intron 1 of 2)	AluY|SINE|Alu	4617	NM_006848	11007		NM_006848	ENSG00000175602	CCDC85B	DIPA	coiled-coil domain containing 85B	protein-coding
141084	chr2	238304921	238305180	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-15468	NM_015650	26146		NM_015650	ENSG00000204104	TRAF3IP1	CFAP116|FAP116|IFT54|MIP-T3|MIPT3|SLSN9	TRAF3 interacting protein 1	protein-coding
197478	chr6	75563071	75563330	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-38309	NM_001304792	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
3107	chr1	12228371	12228830	+	0	NA	Intergenic	Intergenic	-1430	NM_015378	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
130696	chr2	86560721	86561650	+	0	NA	intron (NM_001198954, intron 3 of 7)	intron (NM_001198954, intron 3 of 7)	2258	NM_001193517	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
131593	chr2	96866051	96866500	+	0	NA	intron (NM_017789, intron 3 of 14)	intron (NM_017789, intron 3 of 14)	3805	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
61872	chr13	77042551	77042850	+	0	NA	Intergenic	Intergenic	-15541	NM_012158	26224		NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A|IDDSFAS	F-box and leucine rich repeat protein 3	protein-coding
208594	chr7	72941901	72943000	+	0	NA	exon (NM_001257190, exon 14 of 16)	exon (NM_001257190, exon 14 of 16)	12313	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
53101	chr12	57763101	57763300	+	0	NA	exon (NM_000785, exon 9 of 9)	exon (NM_000785, exon 9 of 9)	3878	NM_000785	1594		NM_000785	ENSG00000111012	CYP27B1	CP2B|CYP1|CYP1alpha|CYP27B|P450c1|PDDR|VDD1|VDDR|VDDRI|VDR	cytochrome P450 family 27 subfamily B member 1	protein-coding
74197	chr15	55846071	55846430	+	0	NA	intron (NR_104302, intron 12 of 20)	intron (NR_104302, intron 12 of 20)	70881	NM_001284340	4734		NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	NEDD4 E3 ubiquitin protein ligase	protein-coding
27643	chr10	32962671	32962830	+	0	NA	Intergenic	Intergenic	-4520	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
148014	chr20	63092171	63092750	+	0	NA	Intergenic	Intergenic	-8832	NR_003244	768096		NR_003244		HAR1A	HAR1F|LINC00064|NCRNA00064	highly accelerated region 1A	ncRNA
144954	chr20	37097601	37097800	+	0	NA	Intergenic	AluSc|SINE|Alu	-1703	NM_002895	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
198644	chr6	107804801	107805900	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	18963	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
169682	chr3	172038071	172038230	+	0	NA	Intergenic	Intergenic	-1428	NM_022763	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
158752	chr3	9362401	9363700	+	0	NA	promoter-TSS (NM_015453)	promoter-TSS (NM_015453)	-4	NM_015453	25917		NM_015453	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
47170	chr12	780601	781580	+	0	NA	intron (NM_018979, intron 1 of 27)	MER112|DNA|hAT-Charlie	28167	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
92427	chr17	8434071	8434380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1659	NM_030808	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
105131	chr17	82228051	82230300	+	0	NA	intron (NM_004207, intron 1 of 4)	CpG	133	NM_004207	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
53808	chr12	69248901	69249980	+	0	NA	intron (NM_001300947, intron 1 of 10)	intron (NM_001300947, intron 1 of 10)	9871	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
42186	chr11	67983471	67983630	+	0	NA	Intergenic	SATR1|Satellite|Satellite	20547	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
192826	chr6	27114971	27115330	+	0	NA	Intergenic	MER66C|LTR|ERV1	17645	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
10015	chr1	55213531	55216350	+	0	NA	promoter-TSS (NR_038320)	promoter-TSS (NR_038320)	424	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
41582	chr11	66340451	66341430	+	0	NA	intron (NM_015399, intron 5 of 9)	intron (NM_015399, intron 5 of 9)	4164	NM_015399	25855		NM_015399	ENSG00000174744	BRMS1	-	BRMS1 transcriptional repressor and anoikis regulator	protein-coding
144260	chr20	34540771	34541170	+	0	NA	TTS (NM_001382365)	TTS (NM_001382365)	-5874	NM_181509	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
104794	chr17	81731021	81731480	+	0	NA	Intergenic	L1MB7|LINE|L1	18966	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
14845	chr1	146371601	146371800	+	0	NA	Intergenic	AluY|SINE|Alu	-5107	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
91551	chr17	5040371	5040930	+	0	NA	Intergenic	Intergenic	-5218	NM_001104577	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
95559	chr17	36930001	36930400	+	0	NA	intron (NR_135669, intron 2 of 3)	intron (NR_135669, intron 2 of 3)	6461	NR_135670	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
59815	chr13	30406951	30407450	+	0	NA	Intergenic	L1MC4a|LINE|L1	15044	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
169557	chr3	170221271	170221430	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1074	NM_002740	5584		NM_002740	ENSG00000163558	PRKCI	DXS1179E|PKCI|nPKC-iota	protein kinase C iota	protein-coding
186970	chr5	139682701	139682900	+	0	NA	intron (NM_016463, intron 2 of 2)	intron (NM_016463, intron 2 of 2)	7357	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
141805	chr20	309871	310690	+	0	NA	Intergenic	Intergenic	12710	NM_033089	85364		NM_033089	ENSG00000247315	ZCCHC3	C20orf99	zinc finger CCHC-type containing 3	protein-coding
187265	chr5	141509421	141510230	+	0	NA	intron (NM_018912, intron 3 of 3)	intron (NM_018912, intron 3 of 3)	20584	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
87672	chr16	74602951	74603250	+	0	NA	intron (NM_001145667, intron 1 of 25)	(CAA)n|Simple_repeat|Simple_repeat	4014	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
192044	chr6	16487901	16490150	+	0	NA	intron (NM_000332, intron 6 of 8)	intron (NM_000332, intron 6 of 8)	250438	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
184304	chr5	96878821	96879280	+	0	NA	intron (NM_001329229, intron 1 of 17)	AluJr|SINE|Alu	2550	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
125458	chr2	12192801	12193000	+	0	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	-6230	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
142614	chr20	5598901	5599580	+	0	NA	intron (NM_019593, intron 2 of 19)	intron (NM_019593, intron 2 of 19)	11766	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
157035	chr22	42566301	42567300	+	0	NA	intron (NM_014509, intron 9 of 11)	intron (NM_014509, intron 9 of 11)	12844	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
20974	chr1	202618421	202618680	+	0	NA	intron (NM_177402, intron 1 of 8)	MIRb|SINE|MIR	24903	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
122990	chr19	50820721	50821180	+	0	NA	intron (NM_002257, intron 2 of 4)	intron (NM_002257, intron 2 of 4)	2837	NM_002257	3816		NM_002257	ENSG00000167748	KLK1	KLKR|Klk6|hK1	kallikrein 1	protein-coding
106496	chr18	14868471	14868830	+	0	NA	Intergenic	L1MDb|LINE|L1	38484	NR_036153	100422907		NR_036153	ENSG00000265499	MIR3156-2	mir-3156-2	microRNA 3156-2	ncRNA
184031	chr5	91366551	91366930	+	0	NA	Intergenic	Intergenic	13357	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
47710	chr12	6448101	6448550	+	0	NA	intron (NR_015382, intron 2 of 5)	intron (NR_015382, intron 2 of 5)	3192	NR_015382	678655		NR_015382	ENSG00000215039	CD27-AS1	-	CD27 antisense RNA 1	ncRNA
154261	chr22	31623601	31624080	+	0	NA	exon (NM_001326419, exon 5 of 10)	exon (NM_001326419, exon 5 of 10)	-2309	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
5804	chr1	26577271	26577430	+	0	NA	Intergenic	Intergenic	22808	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
53268	chr12	63778701	63778900	+	0	NA	Intergenic	MER110|LTR|ERV1	-1109	NM_014254	10329		NM_014254	ENSG00000118600	RXYLT1	HP10481|MDDGA10|TMEM5	ribitol xylosyltransferase 1	protein-coding
49853	chr12	34033921	34034250	+	0	NA	Intergenic	Intergenic	11589	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
103325	chr17	77957171	77960650	+	0	NA	Intergenic	CpG	-45327	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
222140	chr8	132480801	132481450	+	0	NA	promoter-TSS (NM_004519)	promoter-TSS (NM_004519)	-30	NM_004519	3786		NM_004519	ENSG00000184156	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel subfamily Q member 3	protein-coding
106837	chr18	24021671	24022730	+	0	NA	intron (NM_001135993, intron 1 of 13)	MER2B|DNA|TcMar-Tigger	-6740	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
236839	chrX	79256751	79257250	+	0	NA	Intergenic	L1MA3|LINE|L1	110334	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
73030	chr15	40788701	40788900	+	0	NA	intron (NM_018163, intron 1 of 10)	AluJr|SINE|Alu	-18289	NM_001258420	84936		NM_032850	ENSG00000166140	ZFYVE19	ANCHR|MPFYVE|PFIC9	zinc finger FYVE-type containing 19	protein-coding
151589	chr21	46660371	46660820	+	0	NA	3' UTR (NM_001242866, exon 7 of 7)	3' UTR (NM_001242866, exon 7 of 7)	24921	NM_001242866	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
139706	chr2	227506351	227506800	+	0	NA	intron (NM_001135189, intron 2 of 11)	L1ME2z|LINE|L1	34419	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
122646	chr19	49849301	49849500	+	0	NA	intron (NR_040037, intron 1 of 3)	L2|LINE|L2	-1305	NM_001364749	53635		NM_017432	ENSG00000104960	PTOV1	ACID2|PTOV-1	PTOV1 extended AT-hook containing adaptor protein	protein-coding
22151	chr1	212107521	212107800	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	30047	NR_036068	100422947		NR_036068	ENSG00000264358	MIR3122	mir-3122	microRNA 3122	ncRNA
33463	chr10	119053871	119054230	+	0	NA	intron (NM_003750, intron 14 of 21)	AluSx1|SINE|Alu	6088	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
160879	chr3	33636021	33636300	+	0	NA	intron (NM_001375716, intron 2 of 31)	L1MC4|LINE|L1	9314	NM_001375716	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
128824	chr2	63050151	63052280	+	0	NA	intron (NR_130153, intron 1 of 4)	CpG	385	NM_014562	5013		NM_014562	ENSG00000115507	OTX1	-	orthodenticle homeobox 1	protein-coding
141661	chr2	241769001	241769580	+	0	NA	TTS (NM_152783)	TTS (NM_152783)	-7532	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
36984	chr11	11856371	11856980	+	0	NA	intron (NM_001372101, intron 1 of 26)	intron (NM_001372101, intron 1 of 26)	14703	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
104693	chr17	81530101	81530300	+	0	NA	intron (NM_012418, intron 1 of 4)	intron (NM_012418, intron 1 of 4)	1823	NM_012418	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
23338	chr1	228111151	228111250	+	0	NA	Intergenic	MER4E|LTR|ERV1	-1888	NM_001321284	128308		NM_181441	ENSG00000162910	MRPL55	AAVG5835|L55nt|MRP-L55|PRO19675|bL31m	mitochondrial ribosomal protein L55	protein-coding
22858	chr1	225472571	225472730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-43795	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
158519	chr3	3158271	3158430	+	0	NA	intron (NM_016302, intron 5 of 10)	MER1B|DNA|hAT-Charlie	21341	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
41485	chr11	66237651	66237950	+	0	NA	intron (NM_018026, intron 19 of 23)	intron (NM_018026, intron 19 of 23)	-19494	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
118599	chr19	36604221	36606780	+	0	NA	promoter-TSS (NR_027239)	promoter-TSS (NR_027239)	187	NM_001256838	84911		NM_032825	ENSG00000161298	ZNF382	KS1	zinc finger protein 382	protein-coding
89196	chr16	88582821	88583600	+	0	NA	intron (NM_144604, intron 2 of 17)	intron (NM_144604, intron 2 of 17)	12807	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
151660	chr22	17075101	17075800	+	0	NA	Intergenic	L1M3f|LINE|L1	-9509	NM_001289905	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
164377	chr3	58222301	58222500	+	0	NA	Intergenic	LTR3A|LTR|ERVK	-11397	NM_001256560	1776		NM_004944	ENSG00000163687	DNASE1L3	D3|DHP2|DNAS1L3|LSD|SLEB16	deoxyribonuclease 1L3	protein-coding
24074	chr1	235318671	235318830	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJb|SINE|Alu	-8466	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
112463	chr19	6387671	6387830	+	0	NA	intron (NM_002096, intron 4 of 12)	intron (NM_002096, intron 4 of 12)	1953	NR_106945	102465533		NR_106945	ENSG00000274390	MIR6885	hsa-mir-6885	microRNA 6885	ncRNA
174779	chr4	47892101	47892300	+	0	NA	intron (NM_152995, intron 11 of 22)	L1MEc|LINE|L1	-22027	NR_125879	101927157		NR_125879		LOC101927157	-	uncharacterized LOC101927157	ncRNA
50850	chr12	49127121	49127550	+	0	NA	TTS (NM_006082)	TTS (NM_006082)	4060	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
142713	chr20	8600651	8600950	+	0	NA	intron (NM_015192, intron 3 of 31)	L1PA2|LINE|L1	-230385	NR_004386	26767		NR_004386	ENSG00000201348	RNU105B	105B|E1-2	RNA, U105B small nucleolar	snoRNA
75636	chr15	67195501	67196100	+	0	NA	TTS (NM_001145103)	TTS (NM_001145103)	29645	NM_001145104	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
145924	chr20	46011721	46012850	+	0	NA	exon (NM_004994, exon 7 of 13)	exon (NM_004994, exon 7 of 13)	3377	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
76491	chr15	74903471	74904130	+	0	NA	intron (NR_135846, intron 5 of 6)	intron (NR_135846, intron 5 of 6)	3051	NR_135852	57184		NM_020447	ENSG00000178761	FAM219B	C15orf17	family with sequence similarity 219 member B	protein-coding
76805	chr15	77033221	77033880	+	0	NA	intron (NM_001321136, intron 13 of 15)	intron (NM_001321136, intron 13 of 15)	37559	NM_005724	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
62958	chr13	112284371	112284830	+	0	NA	Intergenic	Intergenic	-11600	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
195612	chr6	37695021	37695380	+	0	NA	intron (NM_153487, intron 1 of 16)	intron (NM_153487, intron 1 of 16)	2683	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
218188	chr8	41996501	41996780	+	0	NA	intron (NM_001305878, intron 2 of 13)	MSTD|LTR|ERVL-MaLR	-55110	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
188719	chr5	157327251	157329050	+	0	NA	intron (NM_014376, intron 19 of 30)	intron (NM_014376, intron 19 of 30)	17527	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
145042	chr20	38222321	38222880	+	0	NA	intron (NR_145960, intron 6 of 10)	intron (NR_145960, intron 6 of 10)	-37575	NR_104170	149684		NR_104170	ENSG00000285347	LOC149684	-	uncharacterized LOC149684	ncRNA
215103	chr7	155234251	155234350	+	0	NA	Intergenic	Intergenic	-63472	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
3936	chr1	17581371	17581530	+	0	NA	intron (NM_001319837, intron 1 of 25)	intron (NM_001319837, intron 1 of 25)	897	NM_001011722	55160		NM_018125	ENSG00000074964	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor 10 like	protein-coding
162875	chr3	49369671	49370030	+	0	NA	intron (NM_001313941, intron 3 of 5)	AluSp|SINE|Alu	-11250	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
51138	chr12	50117421	50117880	+	0	NA	intron (NM_001257134, intron 1 of 1)	AluSx3|SINE|Alu	5414	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
153969	chr22	30365971	30366330	+	0	NA	exon (NM_001318335, exon 3 of 3)	exon (NM_001318335, exon 3 of 3)	-9256	NM_005877	10291		NM_005877	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	splicing factor 3a subunit 1	protein-coding
162340	chr3	47786601	47786800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4807	NM_003074	6599		NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|HYC5|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
137891	chr2	200853451	200853850	+	0	NA	intron (NR_027856, intron 10 of 10)	AluSz6|SINE|Alu	10911	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
80281	chr16	2243951	2244350	+	0	NA	intron (NM_001178029, intron 4 of 6)	intron (NM_001178029, intron 4 of 6)	7437	NM_001178029	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
150137	chr21	37862751	37862850	+	0	NA	intron (NM_002240, intron 1 of 3)	intron (NM_002240, intron 1 of 3)	53657	NM_002240	3763		NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2	potassium inwardly rectifying channel subfamily J member 6	protein-coding
181789	chr5	50850301	50850550	+	0	NA	Intergenic	Intergenic	119762	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
86376	chr16	66587651	66588150	+	0	NA	intron (NM_144673, intron 3 of 3)	intron (NM_144673, intron 3 of 3)	8437	NM_001199317	146225		NM_144673	ENSG00000140932	CMTM2	CKLFSF2	CKLF like MARVEL transmembrane domain containing 2	protein-coding
52493	chr12	56006451	56006550	+	0	NA	TTS (NM_000456)	TTS (NM_000456)	-1004	NM_001351091	64375		NM_022465	ENSG00000123411	IKZF4	EOS|ZNFN1A4	IKAROS family zinc finger 4	protein-coding
211118	chr7	102521301	102522950	+	0	NA	Intergenic	AluJr|SINE|Alu	-4348	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
31866	chr10	100168801	100169000	+	0	NA	intron (NM_006459, intron 6 of 10)	AluSq|SINE|Alu	17129	NM_001100626	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
164520	chr3	63865751	63866050	+	0	NA	intron (NR_165270, intron 3 of 4)	AluYa5|SINE|Alu	1366	NM_000333	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
236765	chrX	78948401	78949000	+	0	NA	intron (NM_001324221, intron 2 of 2)	L1PB3|LINE|L1	3309	NM_001324225	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
145199	chr20	38890501	38891200	+	0	NA	intron (NM_001172735, intron 3 of 9)	intron (NM_001172735, intron 3 of 9)	-35567	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
224177	chr9	5326201	5326530	+	0	NA	Intergenic	LTR33|LTR|ERVL	13511	NM_006911	6013		NM_006911	ENSG00000107018	RLN1	H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2	relaxin 1	protein-coding
30335	chr10	77264001	77264600	+	0	NA	intron (NM_001271518, intron 1 of 27)	intron (NM_001271518, intron 1 of 27)	86461	NM_001322838	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
89358	chr16	88772371	88772800	+	0	NA	intron (NM_001142864, intron 1 of 50)	AluSc|SINE|Alu	12635	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
51831	chr12	53454201	53455330	+	0	NA	5' UTR (NM_001128912, exon 2 of 15)	5' UTR (NM_001128912, exon 2 of 15)	2663	NM_001098620	5094		NM_005016	ENSG00000197111	PCBP2	HNRNPE2|HNRPE2|hnRNP-E2	poly(rC) binding protein 2	protein-coding
55839	chr12	109051821	109053400	+	0	NA	promoter-TSS (NM_032663)	promoter-TSS (NM_032663)	34	NM_032663	84749		NM_032663	ENSG00000135093	USP30	-	ubiquitin specific peptidase 30	protein-coding
87225	chr16	69568251	69568850	+	0	NA	intron (NM_138713, intron 2 of 14)	intron (NM_138713, intron 2 of 14)	2584	NM_173215	10725		NM_006599	ENSG00000102908	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T cells 5	protein-coding
198258	chr6	99490451	99491050	+	0	NA	intron (NR_144344, intron 5 of 15)	intron (NR_144344, intron 5 of 15)	24626	NM_001346033	85015		NM_032929	ENSG00000123552	USP45	LCA19	ubiquitin specific peptidase 45	protein-coding
67613	chr14	72801101	72801500	+	0	NA	intron (NM_001280542, intron 1 of 10)	intron (NM_001280542, intron 1 of 10)	91349	NM_001280544	8110		NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4|SMARCG3	double PHD fingers 3	protein-coding
223401	chr8	143925251	143925550	+	0	NA	exon (NM_000445, exon 32 of 33)	exon (NM_000445, exon 32 of 33)	14197	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
213454	chr7	138865771	138866250	+	0	NA	intron (NM_001164665, intron 15 of 19)	intron (NM_001164665, intron 15 of 19)	-67814	NM_020632	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
93661	chr17	19201321	19201850	+	0	NA	Intergenic	L2a|LINE|L2	-11340	NR_006881	780853		NR_006881		SNORD3C	RNU3-3|U3-3	small nucleolar RNA, C/D box 3C	snoRNA
94811	chr17	31310291	31311400	+	0	NA	intron (NM_006495, intron 1 of 1)	intron (NM_006495, intron 1 of 1)	3209	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
159973	chr3	17755971	17756330	+	0	NA	Intergenic	Intergenic	13206	NR_135536	105376975		NR_135536	ENSG00000286352	LOC105376975	-	uncharacterized LOC105376975	ncRNA
60874	chr13	46079521	46080180	+	0	NA	intron (NM_001278541, intron 4 of 9)	intron (NM_001278541, intron 4 of 9)	25183	NM_001872	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
227220	chr9	88835051	88835550	+	0	NA	Intergenic	Intergenic	-89395	NR_036252	100423015		NR_036252	ENSG00000265873	MIR4289	-	microRNA 4289	ncRNA
90530	chr17	1481071	1482200	+	0	NA	intron (NM_001080779, intron 5 of 31)	AluSx|SINE|Alu	3766	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
9959	chr1	54794801	54795000	+	0	NA	intron (NM_017904, intron 1 of 5)	intron (NM_017904, intron 1 of 5)	6423	NM_017904	55001		NM_017904	ENSG00000006555	TTC22	-	tetratricopeptide repeat domain 22	protein-coding
192922	chr6	27687021	27687800	+	0	NA	Intergenic	Intergenic	-6625	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
181617	chr5	44797721	44797980	+	0	NA	intron (NR_109863, intron 1 of 3)	MER41B|LTR|ERV1	10943	NR_109865	100506674		NR_109862		MRPS30-DT	BRCAT54	MRPS30 divergent transcript	ncRNA
15184	chr1	149160351	149161300	+	0	NA	Intergenic	AluSz|SINE|Alu	40321	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
32298	chr10	102141871	102142430	+	0	NA	intron (NM_015062, intron 5 of 13)	AluSc|SINE|Alu	9110	NM_015062	23082		NM_015062	ENSG00000148840	PPRC1	PRC	PPARG related coactivator 1	protein-coding
176050	chr4	82419371	82420030	+	0	NA	Intergenic	AluJb|SINE|Alu	10525	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
151948	chr22	19120801	19121000	+	0	NA	intron (NM_001184781, intron 1 of 9)	intron (NM_001184781, intron 1 of 9)	1512	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
88740	chr16	86340801	86341000	+	0	NA	intron (NR_024406, intron 1 of 6)	intron (NR_024406, intron 1 of 6)	4779	NR_024406	732275		NR_024406	ENSG00000168367	LINC00917	-	long intergenic non-protein coding RNA 917	ncRNA
165778	chr3	105780771	105781150	+	0	NA	intron (NM_001321811, intron 3 of 16)	AluY|SINE|Alu	86631	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
98579	chr17	47723621	47723880	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9486	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
177326	chr4	109751021	109751930	+	0	NA	intron (NM_001375283, intron 6 of 10)	AluSx1|SINE|Alu	-21405	NM_030821	81579		NM_030821	ENSG00000123739	PLA2G12A	GXII|PLA2G12|ROSSY	phospholipase A2 group XIIA	protein-coding
40584	chr11	64373171	64373600	+	0	NA	Intergenic	Intergenic	4783	NR_031602	100302280		NR_031602	ENSG00000221273	MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	ncRNA
94118	chr17	28058071	28058630	+	0	NA	intron (NM_016231, intron 1 of 10)	intron (NM_016231, intron 1 of 10)	15673	NM_016231	51701		NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding
216236	chr8	12192851	12195300	+	0	NA	promoter-TSS (NM_001083537)	promoter-TSS (NM_001083537)	54	NR_003494	85002		NM_001083537	ENSG00000186523	FAM86B1	-	family with sequence similarity 86 member B1	protein-coding
81943	chr16	11796501	11798580	+	0	NA	promoter-TSS (NM_014153)	promoter-TSS (NM_014153)	-282	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
228849	chr9	112302671	112302830	+	0	NA	intron (NM_001375918, intron 1 of 13)	AluSx1|SINE|Alu	30276	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
188687	chr5	157280471	157281280	+	0	NA	intron (NM_014376, intron 1 of 30)	L1MC5|LINE|L1	11551	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
20627	chr1	199162571	199162930	+	0	NA	intron (NR_147896, intron 3 of 3)	L2c|LINE|L2	14152	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
4243	chr1	19591721	19592380	+	0	NA	intron (NR_135054, intron 1 of 1)	intron (NR_135054, intron 1 of 1)	4782	NR_135054	105378614		NR_135054	ENSG00000235185	MICOS10-DT	-	MICOS10 divergent transcript	ncRNA
13321	chr1	113758801	113760380	+	0	NA	promoter-TSS (NR_136564)	promoter-TSS (NR_136564)	-50	NM_001323048	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
106468	chr18	14131721	14133130	+	0	NA	promoter-TSS (NM_145287)	promoter-TSS (NM_145287)	10	NM_145287	162655		NM_145287	ENSG00000175322	ZNF519	HsT2362	zinc finger protein 519	protein-coding
142136	chr20	2745571	2745730	+	0	NA	intron (NR_138537, intron 7 of 17)	intron (NR_138537, intron 7 of 17)	52772	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
205717	chr7	23467871	23468530	+	0	NA	intron (NM_006547, intron 2 of 14)	intron (NM_006547, intron 2 of 14)	2291	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
35676	chr11	1877951	1878500	+	0	NA	intron (NM_001013254, intron 1 of 10)	intron (NM_001013254, intron 1 of 10)	-1820	NR_107001	102465993		NR_107001	ENSG00000284594	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
135719	chr2	169131701	169132180	+	0	NA	intron (NM_004525, intron 77 of 78)	intron (NM_004525, intron 77 of 78)	50833	NM_001142271	10170		NM_005771	ENSG00000073737	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4|hRoDH-E2	dehydrogenase/reductase 9	protein-coding
180333	chr5	6625071	6625230	+	0	NA	intron (NR_037947, intron 4 of 17)	intron (NR_037947, intron 4 of 17)	7894	NM_017755	54888		NM_017755	ENSG00000037474	NSUN2	MISU|MRT5|SAKI|TRM4	NOP2/Sun RNA methyltransferase 2	protein-coding
34649	chr10	133327671	133328250	+	0	NA	exon (NM_015722, exon 3 of 6)	exon (NM_015722, exon 3 of 6)	8936	NM_015722	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
99154	chr17	49359921	49360600	+	0	NA	promoter-TSS (NR_110884)	promoter-TSS (NR_110884)	-905	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
174746	chr4	46724431	46724550	+	0	NA	Intergenic	(GGC)n|Simple_repeat|Simple_repeat	184755	NM_130902	170712		NM_130902	ENSG00000170516	COX7B2	-	cytochrome c oxidase subunit 7B2	protein-coding
195966	chr6	41954121	41954750	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx3|SINE|Alu	-12587	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
152265	chr22	20264801	20265630	+	0	NA	intron (NM_023004, intron 1 of 1)	intron (NM_023004, intron 1 of 1)	3103	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
104288	chr17	80856271	80857550	+	0	NA	intron (NM_020761, intron 12 of 33)	intron (NM_020761, intron 12 of 33)	-51278	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
134522	chr2	143541901	143542300	+	0	NA	intron (NM_018460, intron 10 of 13)	L1PA4|LINE|L1	-394967	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
17101	chr1	156148071	156148860	+	0	NA	Intergenic	Intergenic	-1479	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
41296	chr11	65869001	65869230	+	0	NA	intron (NM_016938, intron 7 of 10)	intron (NM_016938, intron 7 of 10)	3685	NM_016938	30008		NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin extracellular matrix protein 2	protein-coding
62241	chr13	98533851	98534350	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-11975	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
182035	chr5	55694101	55694380	+	0	NA	intron (NM_173514, intron 3 of 15)	intron (NM_173514, intron 3 of 15)	-1187	NR_047649	153129		NM_173514	ENSG00000177058	SLC38A9	SNAT9|URLC11	solute carrier family 38 member 9	protein-coding
213040	chr7	131044481	131045130	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	62225	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
103541	chr17	78656651	78656950	+	0	NA	Intergenic	Intergenic	-24743	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
132342	chr2	105596401	105596800	+	0	NA	intron (NR_038891, intron 3 of 3)	intron (NR_038891, intron 3 of 3)	13959	NR_038891	285000		NR_038891		LINC02946	RMEL1	long intergenic non-protein coding RNA 2946	ncRNA
186699	chr5	138750371	138750880	+	0	NA	intron (NR_134244, intron 1 of 1)	AluJb|SINE|Alu	2684	NR_134245	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
160846	chr3	33091501	33092100	+	0	NA	3' UTR (NM_001039770, exon 2 of 2)	3' UTR (NM_001039770, exon 2 of 2)	5032	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
56047	chr12	110501021	110502780	+	0	NA	promoter-TSS (NM_001286534)	promoter-TSS (NM_001286534)	211	NM_016226	51699		NM_016226	ENSG00000111237	VPS29	DC15|DC7|PEP11	VPS29 retromer complex component	protein-coding
122679	chr19	49882721	49883550	+	0	NA	intron (NM_024682, intron 9 of 16)	intron (NM_024682, intron 9 of 16)	-4779	NM_001278160	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
29863	chr10	72366001	72366600	+	0	NA	Intergenic	Intergenic	-11381	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
17808	chr1	159824751	159825400	+	0	NA	Intergenic	Intergenic	-1798	NM_001330741	56833		NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
148335	chr20	63784421	63784680	+	0	NA	intron (NM_025224, intron 2 of 4)	intron (NM_025224, intron 2 of 4)	20953	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
176444	chr4	89287921	89288300	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	19690	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
33070	chr10	110884851	110885030	+	0	NA	intron (NM_145341, intron 5 of 12)	AluJr4|SINE|Alu	13012	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
116806	chr19	18534101	18534480	+	0	NA	intron (NM_012181, intron 6 of 8)	AluY|SINE|Alu	9283	NM_012181	23770		NM_012181	ENSG00000105701	FKBP8	FKBP38|FKBPr38	FKBP prolyl isomerase 8	protein-coding
42161	chr11	67795321	67795580	+	0	NA	intron (NR_024249, intron 3 of 3)	intron (NR_024249, intron 3 of 3)	9886	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
214508	chr7	150468821	150469430	+	0	NA	intron (NM_175571, intron 2 of 4)	L2b|LINE|L2	18495	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
137397	chr2	196234751	196235580	+	0	NA	intron (NM_001348768, intron 21 of 28)	AluY|SINE|Alu	-24859	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
219739	chr8	81067251	81068180	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	44353	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
12036	chr1	97920491	97921880	+	0	NA	promoter-TSS (NM_000110)	promoter-TSS (NM_000110)	-126	NM_001160301	1806		NM_000110	ENSG00000188641	DPYD	DHP|DHPDHASE|DPD|DYPD	dihydropyrimidine dehydrogenase	protein-coding
207399	chr7	44228151	44228450	+	0	NA	intron (NM_001220, intron 19 of 23)	intron (NM_001220, intron 19 of 23)	27322	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
84314	chr16	30115121	30115800	+	0	NA	intron (NM_002746, intron 8 of 8)	intron (NM_002746, intron 8 of 8)	-1923	NM_024307	79153		NM_024307	ENSG00000102886	GDPD3	GDE7	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding
121021	chr19	45796451	45796750	+	0	NA	intron (NM_030785, intron 5 of 5)	AluSz|SINE|Alu	-3755	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
115061	chr19	14169121	14169380	+	0	NA	non-coding (NR_045214, exon 3 of 3)	non-coding (NR_045214, exon 3 of 3)	32098	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
205560	chr7	20777821	20778280	+	0	NA	Intergenic	CpG	8836	NM_198956	221833		NM_182700	ENSG00000164651	SP8	BTD	Sp8 transcription factor	protein-coding
183802	chr5	82349701	82349950	+	0	NA	Intergenic	Intergenic	70363	NM_001017971	92270		NM_001017971		ATP6AP1L	-	ATPase H+ transporting accessory protein 1 like (pseudogene)	pseudo
42868	chr11	73305871	73306550	+	0	NA	Intergenic	L3|LINE|CR1	-2066	NM_014786	9828		NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor 17	protein-coding
2773	chr1	10793171	10793450	+	0	NA	intron (NM_017766, intron 1 of 15)	intron (NM_017766, intron 1 of 15)	3336	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
93879	chr17	21099071	21100050	+	0	NA	Intergenic	Intergenic	24004	NR_110895	101060544		NR_110895	ENSG00000236819	LINC01563	HP08942	long intergenic non-protein coding RNA 1563	ncRNA
16430	chr1	154567051	154567150	+	0	NA	promoter-TSS (NM_000748)	promoter-TSS (NM_000748)	-678	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
7789	chr1	36238821	36239080	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluY|SINE|Alu	14507	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
135687	chr2	168750621	168751880	+	0	NA	intron (NM_203463, intron 8 of 9)	intron (NM_203463, intron 8 of 9)	35179	NR_045786	100861402		NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
205689	chr7	23193871	23194030	+	0	NA	intron (NM_007342, intron 3 of 6)	LTR12C|LTR|ERV1	11902	NM_001370444	11097		NM_007342	ENSG00000136243	NUP42	CG1|NLP-1|NLP1|NLP_1|NUPL2|UIP1|hCG1	nucleoporin 42	protein-coding
111642	chr19	4181871	4183300	+	0	NA	promoter-TSS (NM_001193285)	promoter-TSS (NM_001193285)	-22	NM_016539	51548		NM_016539	ENSG00000077463	SIRT6	SIR2L6|hSIRT6	sirtuin 6	protein-coding
78911	chr15	101180571	101181130	+	0	NA	intron (NM_014918, intron 2 of 2)	intron (NM_014918, intron 2 of 2)	71198	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
143356	chr20	25867821	25868700	+	0	NA	Intergenic	SST1|Satellite|centr	-14239	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
66304	chr14	61402921	61404050	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	82042	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
106004	chr18	7947651	7947950	+	0	NA	intron (NM_001378146, intron 1 of 29)	L2c|LINE|L2	925	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
228876	chr9	112451051	112451150	+	0	NA	TTS (NM_001350649)	TTS (NM_001350649)	-35727	NM_001287038	158405		NM_133465	ENSG00000165185	KIAA1958	-	KIAA1958	protein-coding
204318	chr7	2708351	2708650	+	0	NA	intron (NM_001321766, intron 3 of 6)	intron (NM_001321766, intron 3 of 6)	20298	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
226550	chr9	72357721	72357980	+	0	NA	intron (NM_001278243, intron 5 of 6)	intron (NM_001278243, intron 5 of 6)	6706	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
229753	chr9	125177171	125177600	+	0	NA	intron (NM_001123369, intron 1 of 5)	AluY|SINE|Alu	12418	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
207093	chr7	39987651	39988230	+	0	NA	exon (NM_031267, exon 2 of 14)	exon (NM_031267, exon 2 of 14)	37580	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
26016	chr10	12262321	12262980	+	0	NA	Intergenic	Intergenic	66462	NM_006023	8872		NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
106331	chr18	12973721	12973980	+	0	NA	intron (NM_031216, intron 5 of 8)	MLT1L|LTR|ERVL-MaLR	-17512	NM_032142	55125		NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
170771	chr3	188557601	188557800	+	0	NA	intron (NR_164692, intron 5 of 9)	intron (NR_164692, intron 5 of 9)	10966	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
45947	chr11	121363051	121363250	+	0	NA	Intergenic	Intergenic	70282	NM_001024956	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
54709	chr12	93443651	93444130	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-1943	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
219865	chr8	85175151	85175530	+	0	NA	intron (NR_134311, intron 1 of 2)	MLT1A|LTR|ERVL-MaLR	1701	NR_134311	102723322		NR_134311	ENSG00000260493	E2F5-DT	-	E2F5 divergent transcript	ncRNA
22410	chr1	220037751	220038250	+	0	NA	intron (NM_004446, intron 2 of 31)	HAL1|LINE|L1	8505	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
178245	chr4	143511521	143511900	+	0	NA	Intergenic	AluJo|SINE|Alu	-1992	NM_003601	8467		NM_003601	ENSG00000153147	SMARCA5	ISWI|SNF2H|WCRF135|hISWI|hSNF2H	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding
232943	chr9	136940471	136940630	+	0	NA	3' UTR (NM_018998, exon 9 of 9)	3' UTR (NM_018998, exon 9 of 9)	4188	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
147513	chr20	59186471	59186630	+	0	NA	intron (NM_178457, intron 1 of 5)	MIRb|SINE|MIR	22729	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
13091	chr1	111598271	111599130	+	0	NA	TTS (NR_034126)	TTS (NR_034126)	9618	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
116587	chr19	18254501	18254700	+	0	NA	intron (NR_036575, intron 1 of 3)	MIR|SINE|MIR	819	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
130818	chr2	87059051	87060230	+	0	NA	intron (NR_026846, intron 1 of 10)	intron (NR_026846, intron 1 of 10)	16773	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
164871	chr3	71075321	71076030	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-10751	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
50418	chr12	47391521	47392330	+	0	NA	Intergenic	Intergenic	-23083	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
192450	chr6	24905621	24905880	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	4984	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
231416	chr9	131123751	131124300	+	0	NA	TTS (NM_001185096)	TTS (NM_001185096)	-1561	NM_005085	8021		NM_005085	ENSG00000126883	NUP214	CAIN|CAN|IIAE9	nucleoporin 214	protein-coding
58192	chr12	125183151	125183630	+	0	NA	Intergenic	Intergenic	-2996	NM_001366854	114795		NM_052907	ENSG00000139364	TMEM132B	-	transmembrane protein 132B	protein-coding
70375	chr14	101897251	101897550	+	0	NA	intron (NM_178587, intron 8 of 11)	intron (NM_178587, intron 8 of 11)	-67173	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
30213	chr10	74855021	74855280	+	0	NA	intron (NM_012330, intron 3 of 17).2	intron (NM_012330, intron 3 of 17).2	28550	NM_001370137	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
219601	chr8	80031451	80031550	+	0	NA	Intergenic	Intergenic	-1241	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
156481	chr22	41273301	41273500	+	0	NA	intron (NM_001278651, intron 4 of 16)	intron (NM_001278651, intron 4 of 16)	12787	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
229654	chr9	124320251	124320550	+	0	NA	intron (NM_001166169, intron 4 of 9)	intron (NM_001166169, intron 4 of 9)	27980	NM_001166169	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
150269	chr21	41771071	41771650	+	0	NA	Intergenic	Intergenic	-4308	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
70423	chr14	102026721	102026980	+	0	NA	intron (NM_001376, intron 44 of 77)	intron (NM_001376, intron 44 of 77)	60194	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
69963	chr14	99746521	99746980	+	0	NA	intron (NM_001375411, intron 1 of 21)	intron (NM_001375411, intron 1 of 21)	9028	NM_001375411	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
180039	chr5	1063771	1063930	+	0	NA	promoter-TSS (NR_039778)	promoter-TSS (NR_039778)	-876	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
132193	chr2	101979371	101979730	+	0	NA	Intergenic	Intergenic	-3915	NR_103791	100506328		NR_103791		LINC01127	-	long intergenic non-protein coding RNA 1127	ncRNA
195998	chr6	41998801	41999200	+	0	NA	intron (NM_001136017, intron 1 of 4)	MIR|SINE|MIR	49894	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
19589	chr1	179355501	179355700	+	0	NA	non-coding (NR_045530, exon 14 of 14)	non-coding (NR_045530, exon 14 of 14)	-10371	NM_144696	126859		NM_144619	ENSG00000162779	AXDND1	C1orf125	axonemal dynein light chain domain containing 1	protein-coding
96012	chr17	39226771	39226930	+	0	NA	promoter-TSS (NM_198993)	promoter-TSS (NM_198993)	-905	NM_001351360	342667		NM_198993	ENSG00000141750	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
82363	chr16	15989001	15989400	+	0	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	39584	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
80806	chr16	3442721	3444700	+	0	NA	promoter-TSS (NM_001317093)	promoter-TSS (NM_001317093)	30	NM_001083601	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
238486	chrX	153489251	153489450	+	0	NA	intron (NR_169631, intron 1 of 10)	intron (NR_169631, intron 1 of 10)	-5630	NM_001711	633		NM_001711	ENSG00000182492	BGN	DSPG1|MRLS|PG-S1|PGI|SEMDX|SLRR1A	biglycan	protein-coding
136209	chr2	174575871	174576030	+	0	NA	intron (NM_001375837, intron 3 of 4)	intron (NM_001375837, intron 3 of 4)	-17878	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
85240	chr16	48284851	48285200	+	0	NA	intron (NM_031490, intron 8 of 14)	L1M4|LINE|L1	-37486	NM_001370497	85320		NM_032583	ENSG00000121270	ABCC11	EWWD|MRP8|WW	ATP binding cassette subfamily C member 11	protein-coding
206207	chr7	28328201	28329000	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	29279	NM_182899	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
38656	chr11	46377771	46378130	+	0	NA	intron (NM_001199266, intron 25 of 30)	L2a|LINE|L2	1548	NR_039837	100616368		NR_039837	ENSG00000264102	MIR4688	mir-4688	microRNA 4688	ncRNA
146480	chr20	49806451	49806750	+	0	NA	Intergenic	Intergenic	-6113	NM_001260491	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
229904	chr9	126607251	126607350	+	0	NA	Intergenic	Intergenic	-6628	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
219951	chr8	89294151	89294250	+	0	NA	Intergenic	L2a|LINE|L2	463511	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
120675	chr19	45113821	45114080	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	20771	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
52075	chr12	54043701	54044250	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	-9860	NM_153633	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
24246	chr1	236278251	236278700	+	0	NA	intron (NM_019891, intron 1 of 15)	intron (NM_019891, intron 1 of 15)	3483	NM_019891	56605		NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding
236449	chrX	71549221	71549480	+	0	NA	intron (NM_181672, intron 5 of 21)	Tigger5b|DNA|TcMar-Tigger	16246	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
137379	chr2	196195471	196196030	+	0	NA	3' UTR (NM_020760, exon 29 of 29)	3' UTR (NM_020760, exon 29 of 29)	-24172	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
5785	chr1	26537171	26537530	+	0	NA	intron (NM_002953, intron 2 of 21)	intron (NM_002953, intron 2 of 21)	-5762	NM_001330441	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
207377	chr7	44113901	44114600	+	0	NA	TTS (NM_001256879)	TTS (NM_001256879)	3401	NR_039792	100616346		NR_039792	ENSG00000284412	MIR4649	mir-4649	microRNA 4649	ncRNA
106447	chr18	13673801	13674200	+	0	NA	intron (NM_001098801, intron 3 of 4)	intron (NM_001098801, intron 3 of 4)	32242	NM_001276251	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
98090	chr17	45589651	45590150	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	11962	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
153806	chr22	29702851	29703330	+	0	NA	Intergenic	Intergenic	-16913	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
25279	chr10	6144201	6146500	+	0	NA	promoter-TSS (NM_001282630)	promoter-TSS (NM_001282630)	429	NM_001323016	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
155145	chr22	37663351	37663650	+	0	NA	intron (NM_020315, intron 1 of 1)	AluJb|SINE|Alu	4777	NM_020315	57026		NM_020315	ENSG00000241360	PDXP	CIN|PLP|dJ37E16.5	pyridoxal phosphatase	protein-coding
21271	chr1	204400951	204401430	+	0	NA	Intergenic	Intergenic	10627	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
166954	chr3	125313221	125313480	+	0	NA	exon (NM_001348428, exon 4 of 9)	exon (NM_001348428, exon 4 of 9)	43930	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
142278	chr20	3206501	3206980	+	0	NA	Intergenic	AluY|SINE|Alu	-1936	NM_001324238	3704		NM_033453	ENSG00000125877	ITPA	C20orf37|DEE35|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3	inosine triphosphatase	protein-coding
87136	chr16	69130371	69130630	+	0	NA	intron (NM_001002847, intron 1 of 2)	intron (NM_001002847, intron 1 of 2)	1659	NM_001366604	113455421		NM_001002847	ENSG00000286140	DERPC	-	DERPC proline and glycine rich nuclear protein	protein-coding
127642	chr2	43141621	43141880	+	0	NA	Intergenic	AluSz|SINE|Alu	-39305	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
220191	chr8	95267971	95270650	+	0	NA	promoter-TSS (NM_177965)	promoter-TSS (NM_177965)	-109	NM_177965	157657		NM_177965	ENSG00000156172	CFAP418	BBS21|C8orf37|CORD16|FAP418|MOT25|RP64|smalltalk	cilia and flagella associated protein 418	protein-coding
76780	chr15	77007851	77008430	+	0	NA	intron (NM_001321136, intron 2 of 15)	intron (NM_001321136, intron 2 of 15)	13014	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
56110	chr12	110739601	110739800	+	0	NA	intron (NM_002710, intron 1 of 6)	intron (NM_002710, intron 1 of 6)	3191	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
216178	chr8	11801171	11801400	+	0	NA	intron (NM_001287744, intron 1 of 7)	L2a|LINE|L2	-1326	NM_001287745	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
110743	chr19	2334001	2334350	+	0	NA	intron (NM_152988, intron 1 of 14)	intron (NM_152988, intron 1 of 14)	5491	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
36943	chr11	10932471	10932930	+	0	NA	Intergenic	AluJr|SINE|Alu	74483	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
183787	chr5	82068351	82069000	+	0	NA	intron (NM_031482, intron 3 of 7)	intron (NM_031482, intron 3 of 7)	96652	NM_031482	83734		NM_031482	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
98065	chr17	45484601	45485100	+	0	NA	intron (NM_014798, intron 1 of 11).3	intron (NM_014798, intron 1 of 11).3	5871	NR_027774	9842		NM_014798	ENSG00000225190	PLEKHM1	AP162|B2|OPTA3|OPTB6	pleckstrin homology and RUN domain containing M1	protein-coding
151967	chr22	19136871	19137230	+	0	NA	intron (NR_134304, intron 8 of 9)	intron (NR_134304, intron 8 of 9)	5742	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
60364	chr13	40923851	40924450	+	0	NA	Intergenic	LTR32|LTR|ERVL	-2376	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
212625	chr7	129343101	129343450	+	0	NA	intron (NM_001130720, intron 1 of 16)	intron (NM_001130720, intron 1 of 16)	-25105	NM_001130723	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
581	chr1	1282021	1282550	+	0	NA	non-coding (NR_037668, exon 4 of 17)	non-coding (NR_037668, exon 4 of 17)	1849	NM_001130413	6339		NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	sodium channel epithelial 1 subunit delta	protein-coding
166604	chr3	119274821	119275330	+	0	NA	intron (NR_046574, intron 3 of 3)	intron (NR_046574, intron 3 of 3)	-19308	NM_020754	57514		NM_020754	ENSG00000031081	ARHGAP31	AOS|AOS1|CDGAP	Rho GTPase activating protein 31	protein-coding
11850	chr1	92973101	92973900	+	0	NA	Intergenic	Intergenic	-11978	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
138225	chr2	202760901	202761100	+	0	NA	intron (NM_173511, intron 7 of 7)	AluJb|SINE|Alu	68234	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
139935	chr2	230788671	230789230	+	0	NA	intron (NM_016289, intron 2 of 8)	L1MEc|LINE|L1	-75235	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
86866	chr16	67945171	67945530	+	0	NA	intron (NM_001145964, intron 22 of 23)	intron (NM_001145964, intron 22 of 23)	-1230	NM_000229	3931		NM_000229	ENSG00000213398	LCAT	-	lecithin-cholesterol acyltransferase	protein-coding
34341	chr10	132188301	132189300	+	0	NA	intron (NM_006426, intron 1 of 13)	MER58B|DNA|hAT-Charlie	1852	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
20121	chr1	192529121	192529380	+	0	NA	Intergenic	L2a|LINE|L2	-46523	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
110644	chr19	2233701	2234550	+	0	NA	promoter-TSS (NR_031596)	promoter-TSS (NR_031596)	24	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
31376	chr10	93895601	93895950	+	0	NA	intron (NR_144336, intron 1 of 2)	intron (NR_144336, intron 1 of 2)	1797	NR_144336	159371		NM_153226	ENSG00000176273	SLC35G1	C10orf60|POST|TMEM20	solute carrier family 35 member G1	protein-coding
94242	chr17	28676701	28676900	+	0	NA	intron (NM_003170, intron 7 of 36)	AluJo|SINE|Alu	14595	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
194638	chr6	33583501	33584080	+	0	NA	promoter-TSS (NR_028361)	promoter-TSS (NR_028361)	91	NR_028361	449520		NM_001005478	ENSG00000293518	GGNBP1	-	gametogenetin binding protein 1 (pseudogene)	pseudo
68347	chr14	77625371	77625530	+	0	NA	Intergenic	Intergenic	-8813	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
4071	chr1	19069321	19069780	+	0	NA	Intergenic	Intergenic	-112874	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
75172	chr15	64697971	64699050	+	0	NA	intron (NM_002537, intron 1 of 4)	intron (NM_002537, intron 1 of 4)	4771	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
38899	chr11	47413271	47413850	+	0	NA	intron (NM_001330245, intron 5 of 9)	intron (NM_001330245, intron 5 of 9)	4970	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
82001	chr16	11907771	11908130	+	0	NA	intron (NM_001130007, intron 1 of 14)	intron (NM_001130007, intron 1 of 14)	8006	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
27185	chr10	28553971	28554530	+	0	NA	intron (NM_100486, intron 3 of 12)	MER2|DNA|TcMar-Tigger	21132	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
183619	chr5	80220651	80221330	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	35058	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
3987	chr1	18909901	18910200	+	0	NA	intron (NM_001136265, intron 8 of 8)	L2c|LINE|L2	-7251	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
120941	chr19	45678851	45679150	+	0	NA	intron (NM_000164, intron 12 of 13)	MIR|SINE|MIR	-3992	NR_037512	100500845		NR_037512	ENSG00000283212	MIR642B	mir-642b	microRNA 642b	ncRNA
186677	chr5	138652621	138652880	+	0	NA	Intergenic	Intergenic	-77349	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
20828	chr1	201468421	201469480	+	0	NA	non-coding (NR_073080, exon 1 of 3)	non-coding (NR_073080, exon 1 of 3)	221	NR_073080	23612		NM_012396	ENSG00000174307	PHLDA3	TIH1	pleckstrin homology like domain family A member 3	protein-coding
169500	chr3	169863221	169864080	+	0	NA	intron (NM_001277127, intron 1 of 8)	intron (NM_001277127, intron 1 of 8)	6285	NM_024727	79782		NM_024727	ENSG00000114248	LRRC31	HEL-S-293	leucine rich repeat containing 31	protein-coding
215915	chr8	8203551	8204050	+	0	NA	intron (NR_147089, intron 2 of 3)	HERVK-int|LTR|ERVK	23703	NR_147089	105379219		NR_147089		FAM85B	lncRNA-HEIM	family with sequence similarity 85 member B	ncRNA
93167	chr17	17788471	17789200	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	-9306	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
218453	chr8	48010171	48010880	+	0	NA	intron (NM_003350, intron 1 of 3)	AluSc8|SINE|Alu	2094	NM_003350	7336		NM_003350	ENSG00000169139	UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin conjugating enzyme E2 V2	protein-coding
166703	chr3	120597521	120598530	+	0	NA	intron (NM_004547, intron 1 of 2)	intron (NM_004547, intron 1 of 2)	1689	NM_001168331	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
69072	chr14	92004901	92005300	+	0	NA	exon (NM_004239, exon 11 of 21)	exon (NM_004239, exon 11 of 21)	34959	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
52820	chr12	57005871	57007080	+	0	NA	promoter-TSS (NM_014830)	promoter-TSS (NM_014830)	71	NM_014830	9880		NM_014830	ENSG00000166860	ZBTB39	ZNF922	zinc finger and BTB domain containing 39	protein-coding
122697	chr19	49899621	49900680	+	0	NA	intron (NR_047577, intron 4 of 10)	L1ME4a|LINE|L1	-3263	NM_152899	259307		NM_152899	ENSG00000104951	IL4I1	FIG1|LAAO|LAO|hIL4I1	interleukin 4 induced 1	protein-coding
79100	chr16	188171	189100	+	0	NA	TTS (NM_001320226)	TTS (NM_001320226)	8176	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
231325	chr9	130128901	130130130	+	0	NA	3' UTR (NM_001287346, exon 17 of 17)	3' UTR (NM_001287346, exon 17 of 17)	14704	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
60928	chr13	46288901	46289550	+	0	NA	Intergenic	Intergenic	8619	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
79468	chr16	736051	736550	+	0	NA	exon (NM_001304799, exon 5 of 12)	exon (NM_001304799, exon 5 of 12)	4697	NM_022493	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
197926	chr6	89638021	89639530	+	0	NA	promoter-TSS (NM_020466)	promoter-TSS (NM_020466)	-28	NM_020466	57226		NM_020466	ENSG00000083099	LYRM2	DJ122O8.2	LYR motif containing 2	protein-coding
174542	chr4	40200901	40201530	+	0	NA	intron (NM_001278362, intron 2 of 3)	intron (NM_001278362, intron 2 of 3)	4184	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
165982	chr3	108084151	108085150	+	0	NA	intron (NM_198793, intron 1 of 8)	L2c|LINE|L2	6381	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
181910	chr5	54706301	54706700	+	0	NA	intron (NR_104658, intron 1 of 2)	intron (NR_104658, intron 1 of 2)	-3176	NR_104659	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
63606	chr14	20566921	20567180	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-6119	NM_001289110	390443		NM_001001673	ENSG00000188655	RNASE9	HEL128|RAK1|h461	ribonuclease A family member 9 (inactive)	protein-coding
134726	chr2	144523901	144525030	+	0	NA	promoter-TSS (NR_136320)	promoter-TSS (NR_136320)	-21	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
202173	chr6	155417871	155418850	+	0	NA	intron (NM_015718, intron 10 of 13)	intron (NM_015718, intron 10 of 13)	37479	NM_015718	50508		NM_015718	ENSG00000074771	NOX3	GP91-3|MOX-2	NADPH oxidase 3	protein-coding
113481	chr19	10007251	10007700	+	0	NA	intron (NM_015719, intron 1 of 66)	intron (NM_015719, intron 1 of 66)	3029	NM_015719	50509		NM_015719	ENSG00000080573	COL5A3	-	collagen type V alpha 3 chain	protein-coding
165213	chr3	72851401	72851980	+	0	NA	Intergenic	Intergenic	-3245	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
15143	chr1	148800371	148800530	+	0	NA	Intergenic	L1MB7|LINE|L1	-7892	NM_022359	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
40543	chr11	64312351	64312830	+	0	NA	intron (NM_004451, intron 2 of 6)	L2a|LINE|L2	4969	NM_001286082	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
147132	chr20	54199551	54199900	+	0	NA	Intergenic	Intergenic	-8362	NM_002623	5203		NM_002623	ENSG00000101132	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
136424	chr2	176291921	176292180	+	0	NA	intron (NM_001006635, intron 2 of 10)	intron (NM_001006635, intron 2 of 10)	22608	NM_001319097	10651		NM_006554	ENSG00000128654	MTX2	MDPS|metaxin-2	metaxin 2	protein-coding
54217	chr12	79924471	79924830	+	0	NA	intron (NM_001143885, intron 2 of 25)	AluJo|SINE|Alu	10301	NM_001244992	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
65000	chr14	38125301	38125900	+	0	NA	Intergenic	Intergenic	-82304	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
19247	chr1	172663851	172664450	+	0	NA	intron (NM_000639, intron 2 of 3)	intron (NM_000639, intron 2 of 3)	5047	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
176007	chr4	82223721	82223980	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	150141	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
228439	chr9	99829771	99830530	+	0	NA	intron (NM_173200, intron 4 of 8)	intron (NM_173200, intron 4 of 8)	8265	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
81984	chr16	11891621	11891880	+	0	NA	intron (NM_001130007, intron 5 of 14)	AluSz|SINE|Alu	24206	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
172322	chr4	1680151	1680250	+	0	NA	intron (NM_001174070, intron 1 of 4)	AluSp|SINE|Alu	3791	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
33825	chr10	123911821	123912280	+	0	NA	Intergenic	MER50|LTR|ERV1	-20243	NM_198148	119587		NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	carboxypeptidase X, M14 family member 2	protein-coding
9753	chr1	53322351	53322650	+	0	NA	intron (NM_017522, intron 2 of 15)	L2c|LINE|L2	5570	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
161208	chr3	39172051	39172550	+	0	NA	Intergenic	Intergenic	-17659	NM_001320560	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
78152	chr15	90411171	90411680	+	0	NA	intron (NM_003870, intron 2 of 37)	AluJb|SINE|Alu	23183	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
188980	chr5	163511221	163511700	+	0	NA	intron (NM_013283, intron 1 of 6)	AluJb|SINE|Alu	5841	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
207520	chr7	44805651	44806550	+	0	NA	Intergenic	MIRb|SINE|MIR	9419	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
117021	chr19	18917601	18917950	+	0	NA	intron (NM_007263, intron 1 of 9)	LTR19B|LTR|ERV1	1612	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
199816	chr6	127520021	127520300	+	0	NA	Intergenic	Intergenic	-1136	NM_001012279	387104		NM_001012279	ENSG00000214338	MTCL3	C6orf174|SOGA3|dJ403A15.3	MTCL family member 3	protein-coding
160391	chr3	28009971	28010330	+	0	NA	Intergenic	AluSx|SINE|Alu	-176014	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
64028	chr14	22517271	22517430	+	0	NA	Intergenic	Intergenic	-34391	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
177293	chr4	109589701	109589900	+	0	NA	intron (NM_017918, intron 1 of 7)	L2a|LINE|L2	29554	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
230058	chr9	127419051	127419150	+	0	NA	Intergenic	Intergenic	-5274	NM_001286696	7633		NM_007135	ENSG00000196152	ZNF79	pT7	zinc finger protein 79	protein-coding
199531	chr6	118755921	118756580	+	0	NA	Intergenic	LTR78|LTR|ERV1	-26458	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
128108	chr2	48114201	48114680	+	0	NA	Intergenic	Intergenic	-199859	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
41761	chr11	66693871	66694030	+	0	NA	intron (NM_006946, intron 22 of 37)	intron (NM_006946, intron 22 of 37)	-16063	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
45769	chr11	119260851	119261150	+	0	NA	intron (NM_005188, intron 2 of 15)	AluSz6|SINE|Alu	52012	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
91237	chr17	3942521	3942780	+	0	NA	exon (NM_005173, exon 12 of 21)	exon (NM_005173, exon 12 of 21)	21787	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
125183	chr2	10091221	10092480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11439	NM_001037160	192668		NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
10138	chr1	59816051	59816150	+	0	NA	intron (NM_015888, intron 1 of 21)	intron (NM_015888, intron 1 of 21)	1151	NM_015888	51361		NM_015888	ENSG00000134709	HOOK1	HK1	hook microtubule tethering protein 1	protein-coding
137073	chr2	190909501	190910100	+	0	NA	intron (NM_014905, intron 6 of 17)	AluJo|SINE|Alu	28979	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
175730	chr4	77629971	77630130	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	24230	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
210629	chr7	100450351	100452450	+	0	NA	Intergenic	Intergenic	12860	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
123823	chr19	55202271	55202500	+	0	NA	intron (NM_001161440, intron 3 of 17)	intron (NM_001161440, intron 3 of 17)	7116	NM_002842	5794		NM_002842	ENSG00000080031	PTPRH	R-PTP-H|SAP1	protein tyrosine phosphatase receptor type H	protein-coding
89013	chr16	88110271	88110430	+	0	NA	Intergenic	Intergenic	-9365	NR_120310	400553		NR_120310	ENSG00000205037	LOC400553	-	uncharacterized LOC400553	ncRNA
45538	chr11	118755771	118755930	+	0	NA	intron (NM_004397, intron 11 of 13)	AluSx1|SINE|Alu	35098	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
59540	chr13	27261301	27261900	+	0	NA	Intergenic	L2|LINE|L2	6199	NR_002575	619499		NR_002575	ENSG00000207051	SNORA27	ACA27	small nucleolar RNA, H/ACA box 27	snoRNA
28259	chr10	45671871	45673580	+	0	NA	promoter-TSS (NR_104256)	promoter-TSS (NR_104256)	7	NM_001282905	93550		NM_174890	ENSG00000172671	ZFAND4	ANUBL1	zinc finger AN1-type containing 4	protein-coding
153587	chr22	26756701	26756980	+	0	NA	intron (NR_110543, intron 2 of 5)	CpG	83997	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
124976	chr2	8840001	8840280	+	0	NA	Intergenic	AluY|SINE|Alu	-2527	NM_001348738	57498		NM_020738	ENSG00000134313	KIDINS220	ARMS|SINO|VENARG	kinase D interacting substrate 220	protein-coding
208045	chr7	55968651	55968950	+	0	NA	intron (NM_001202469, intron 1 of 7)	AluSx|SINE|Alu	4215	NM_001202469	2631		NM_001483	ENSG00000146729	NIPSNAP2	GBAS	nipsnap homolog 2	protein-coding
189324	chr5	172159771	172160530	+	0	NA	intron (NM_005990, intron 1 of 18)	AluSg|SINE|Alu	28074	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
193175	chr6	29718121	29718380	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-5090	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
10831	chr1	77947751	77948480	+	0	NA	TTS (NM_001303433)	TTS (NM_001303433)	30957	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
58004	chr12	124350301	124350500	+	0	NA	intron (NM_001077261, intron 29 of 47)	intron (NM_001077261, intron 29 of 47)	-13158	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
22657	chr1	223766601	223766800	+	0	NA	intron (NM_001748, intron 16 of 20)	AluSg|SINE|Alu	54161	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
14510	chr1	144594731	144595080	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	2037	NM_001164262	728945		NM_001164262	ENSG00000279782	PPIAL4F	-	peptidylprolyl isomerase A like 4F	protein-coding
2979	chr1	11981451	11981550	+	0	NA	intron (NM_001127660, intron 1 of 17)	intron (NM_001127660, intron 1 of 17)	1056	NM_014874	9927		NM_014874	ENSG00000116688	MFN2	CMT2A|CMT2A2|CMT2A2A|CMT2A2B|CPRP1|HMSN6A|HSG|MARF|MSL	mitofusin 2	protein-coding
191195	chr6	5294501	5294700	+	0	NA	intron (NM_001374876, intron 2 of 7)	MER21A|LTR|ERVL	33087	NM_001374879	10667		NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
70890	chr14	103879621	103879900	+	0	NA	Intergenic	Intergenic	32039	NR_038436	145216		NR_038436	ENSG00000258735	PPP1R13B-DT	HITT|LINC00637	PPP1R13B divergent transcript	ncRNA
52738	chr12	56631671	56632680	+	0	NA	intron (NM_001351156, intron 1 of 30)	intron (NM_001351156, intron 1 of 30)	-1849	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
82873	chr16	21538971	21539630	+	0	NA	Intergenic	Intergenic	-18856	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
214621	chr7	150727971	150728130	+	0	NA	intron (NM_001199577, intron 3 of 5)	L1MCc|LINE|L1	-9298	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
26193	chr10	14548021	14549030	+	0	NA	5' UTR (NM_001320739, exon 1 of 4)	5' UTR (NM_001320739, exon 1 of 4)	112	NM_001320739	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
234673	chrX	20224701	20225030	+	0	NA	intron (NM_004586, intron 2 of 21)	intron (NM_004586, intron 2 of 21)	42044	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
226886	chr9	78239551	78239850	+	0	NA	intron (NM_001349839, intron 1 of 16)	intron (NM_001349839, intron 1 of 16)	3625	NM_001330693	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
160897	chr3	33802101	33802500	+	0	NA	intron (NM_001256192, intron 1 of 5)	MLT1J|LTR|ERVL-MaLR	3670	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
7983	chr1	37925851	37926880	+	0	NA	intron (NR_158630, intron 7 of 24)	AluSx3|SINE|Alu	5374	NM_001297434	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
202720	chr6	158867501	158868330	+	0	NA	Intergenic	MIR|SINE|MIR	-1899	NR_160978	100130967		NM_001195032	ENSG00000203711	LINC02901	C6orf99	long intergenic non-protein coding RNA 2901	ncRNA
124588	chr2	855171	855580	+	0	NA	intron (NR_033880, intron 1 of 3)	intron (NR_033880, intron 1 of 3)	13051	NR_111963	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
2347	chr1	9238721	9238980	+	0	NA	promoter-TSS (NM_001282587)	promoter-TSS (NM_001282587)	-997	NM_001282587	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
20730	chr1	200890821	200891830	+	0	NA	promoter-TSS (NM_018265)	promoter-TSS (NM_018265)	-206	NM_018265	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
70865	chr14	103714751	103716600	+	0	NA	promoter-TSS (NM_001198953)	promoter-TSS (NM_001198953)	-69	NM_001198953	79038		NM_024071	ENSG00000100711	ZFYVE21	HCVP7TP1|ZF21	zinc finger FYVE-type containing 21	protein-coding
164399	chr3	58435551	58435730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1788	NM_001173468	5162		NM_000925	ENSG00000168291	PDHB	E1beta|PDHBD|PDHE1-B|PDHE1B|PHE1B	pyruvate dehydrogenase E1 subunit beta	protein-coding
118577	chr19	36277051	36277150	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-31172	NM_001366188	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
123241	chr19	53102721	53104400	+	0	NA	promoter-TSS (NM_001102603)	promoter-TSS (NM_001102603)	-126	NM_198893	90338		NM_033288	ENSG00000170949	ZNF160	F11|HKr18|HZF5|KR18	zinc finger protein 160	protein-coding
35132	chr11	708271	708830	+	0	NA	intron (NM_022772, intron 1 of 20)	intron (NM_022772, intron 1 of 20)	-1467	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
224924	chr9	32710771	32710930	+	0	NA	Intergenic	L1PA2|LINE|L1	-72690	NM_212558	401498		NM_212558	ENSG00000188133	TMEM215	-	transmembrane protein 215	protein-coding
43220	chr11	75437301	75437500	+	0	NA	intron (NM_030792, intron 15 of 16)	intron (NM_030792, intron 15 of 16)	-6771	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
38525	chr11	45896551	45896650	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	10671	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
28779	chr10	62054621	62055300	+	0	NA	intron (NM_001244638, intron 2 of 6)	MIRb|SINE|MIR	5603	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
135980	chr2	172109671	172110100	+	0	NA	TTS (NR_126376)	TTS (NR_126376)	6879	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
52569	chr12	56164271	56164830	+	0	NA	exon (NM_001330288, exon 28 of 29)	exon (NM_001330288, exon 28 of 29)	6191	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
92916	chr17	16535121	16536290	+	0	NA	Intergenic	CpG	33499	NM_020653	57336		NM_020653	ENSG00000141040	ZNF287	ZKSCAN13|ZSCAN45	zinc finger protein 287	protein-coding
174797	chr4	48064401	48064600	+	0	NA	Intergenic	Intergenic	47728	NM_207330	152519		NM_207330	ENSG00000163293	NIPAL1	NIPA3|NPAL1|SLC57A3	NIPA like domain containing 1	protein-coding
190708	chr6	250871	251230	+	0	NA	Intergenic	L1MB7|LINE|L1	-41007	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
227118	chr9	85943221	85943680	+	0	NA	intron (NM_024635, intron 2 of 22)	intron (NM_024635, intron 2 of 22)	1921	NM_001321882	60560		NM_021929	ENSG00000135040	NAA35	EGAP|MAK10|MAK10P|bA379P1.1	N-alpha-acetyltransferase 35, NatC auxiliary subunit	protein-coding
71336	chr14	105421171	105421430	+	0	NA	intron (NM_001203258, intron 1 of 20)	intron (NM_001203258, intron 1 of 20)	1473	NM_001203258	9112		NM_004689	ENSG00000182979	MTA1	-	metastasis associated 1	protein-coding
77763	chr15	85787951	85788450	+	0	NA	intron (NM_022480, intron 1 of 2)	intron (NM_022480, intron 1 of 2)	6725	NM_022480	64410		NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch like family member 25	protein-coding
205332	chr7	12570221	12571050	+	0	NA	promoter-TSS (NM_001112706)	promoter-TSS (NM_001112706)	-85	NM_001112706	85477		NM_033128	ENSG00000006747	SCIN	-	scinderin	protein-coding
6634	chr1	28925501	28925730	+	0	NA	intron (NM_001376013, intron 1 of 20)	L2a|LINE|L2	11039	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
234774	chrX	23901751	23902100	+	0	NA	intron (NM_024122, intron 1 of 8)	L2c|LINE|L2	6013	NM_024122	79135		NM_024122	ENSG00000184831	APOO	FAM121B|MIC26|MICOS26|Mic23|My025	apolipoprotein O	protein-coding
158471	chr22	50702321	50702650	+	0	NA	intron (NM_001372044, intron 14 of 23)	L2a|LINE|L2	29662	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
98320	chr17	46256751	46256850	+	0	NA	Intergenic	Intergenic	-31433	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
64156	chr14	22909971	22910800	+	0	NA	intron (NM_018107, intron 2 of 12)	AluSp|SINE|Alu	8764	NM_001352765	55147		NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding
186858	chr5	139473421	139473930	+	0	NA	TTS (NM_001365197)	TTS (NM_001365197)	2671	NM_001365197	111064649		NM_001365197	ENSG00000283288	SMIM33	-	small integral membrane protein 33	protein-coding
225260	chr9	34370751	34371630	+	0	NA	exon (NM_020702, exon 2 of 2)	exon (NM_020702, exon 2 of 2)	5708	NM_020702	57462		NM_020702	ENSG00000164976	MYORG	IBGC7|KIAA1161|NET37	myogenesis regulating glycosidase (putative)	protein-coding
18695	chr1	167430801	167432350	+	0	NA	3' UTR (NM_001378516, exon 9 of 9)	3' UTR (NM_001378516, exon 9 of 9)	86954	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
211220	chr7	102633271	102633800	+	0	NA	Intergenic	Intergenic	9256	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
83927	chr16	29073771	29074130	+	0	NA	promoter-TSS (NR_003369)	promoter-TSS (NR_003369)	-892	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
160436	chr3	28334501	28334800	+	0	NA	intron (NM_022461, intron 5 of 7)	intron (NM_022461, intron 5 of 7)	-14071	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
22912	chr1	225897921	225899100	+	0	NA	Intergenic	Intergenic	-9364	NM_020997	10637		NM_020997	ENSG00000243709	LEFTY1	LEFTB|LEFTYB	left-right determination factor 1	protein-coding
148470	chr20	64044271	64045230	+	0	NA	Intergenic	Intergenic	4889	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
103416	chr17	78226951	78227450	+	0	NA	Intergenic	Intergenic	-4093	NM_001204212	283999		NM_001145529	ENSG00000204278	TMEM235	ARGM1	transmembrane protein 235	protein-coding
18660	chr1	167066401	167066980	+	0	NA	intron (NM_005814, intron 3 of 6)	intron (NM_005814, intron 3 of 6)	23687	NM_005814	10223		NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
87909	chr16	79047451	79047550	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	553237	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
236476	chrX	71618201	71618760	+	0	NA	promoter-TSS (NM_001142797)	promoter-TSS (NM_001142797)	31	NM_001142797	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
137346	chr2	196146751	196146850	+	0	NA	intron (NM_004226, intron 3 of 7)	MIRc|SINE|MIR	24778	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
176834	chr4	102568101	102568300	+	0	NA	intron (NM_001382625, intron 7 of 24)	intron (NM_001382625, intron 7 of 24)	-65714	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
175366	chr4	70616771	70616930	+	0	NA	Intergenic	L2a|LINE|L2	-11894	NM_031889	10117		NM_031889	ENSG00000132464	ENAM	ADAI|AI1C|AIH2	enamelin	protein-coding
93369	chr17	18243101	18243300	+	0	NA	intron (NM_004140, intron 22 of 22)	AluY|SINE|Alu	15538	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
206250	chr7	29244021	29244680	+	0	NA	intron (NM_001293072, intron 1 of 12)	intron (NM_001293072, intron 1 of 12)	-35380	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
64398	chr14	24166771	24166930	+	0	NA	TTS (NM_006084).2	TTS (NM_006084).2	-5230	NM_005132	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
177688	chr4	121822001	121822200	+	0	NA	intron (NM_001237, intron 2 of 7)	intron (NM_001237, intron 2 of 7)	1783	NM_001237	890		NM_001237	ENSG00000145386	CCNA2	CCN1|CCNA	cyclin A2	protein-coding
42378	chr11	68837251	68837580	+	0	NA	intron (NM_001031847, intron 1 of 18)	intron (NM_001031847, intron 1 of 18)	4501	NM_001876	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
129681	chr2	70434451	70435100	+	0	NA	Intergenic	(CTATC)n|Simple_repeat|Simple_repeat	46865	NR_046798	100874273		NR_046798	ENSG00000224606	TGFA-IT1	-	TGFA intronic transcript 1	ncRNA
124949	chr2	8644701	8645200	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	36911	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
3201	chr1	13748951	13750300	+	0	NA	intron (NM_001135610, intron 6 of 7)	CpG	210	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
216062	chr8	10334101	10335450	+	0	NA	intron (NM_001199729, intron 6 of 6).2	CpG	-139790	NR_120604	101929191		NR_120604	ENSG00000253641	LINC03022	LINCR-0001	long intergenic non-protein coding RNA 3022	ncRNA
195809	chr6	41181921	41182650	+	0	NA	Intergenic	Intergenic	18864	NM_024807	79865		NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
62812	chr13	109756071	109756450	+	0	NA	3' UTR (NM_003749, exon 2 of 2)	3' UTR (NM_003749, exon 2 of 2)	27986	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
219528	chr8	75278751	75278850	+	0	NA	promoter-TSS (NR_103850)	promoter-TSS (NR_103850)	89	NR_103849	101805492		NR_103848	ENSG00000249395	CASC9	ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1	cancer susceptibility 9	ncRNA
231541	chr9	131469771	131470130	+	0	NA	intron (NM_013318, intron 13 of 31)	L2c|LINE|L2	-15715	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
151355	chr21	45740751	45741050	+	0	NA	intron (NM_001382287, intron 2 of 15)	intron (NM_001382287, intron 2 of 15)	-7114	NM_001348243	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
119984	chr19	41908001	41908500	+	0	NA	TTS (NM_199002)	TTS (NM_199002)	20199	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
17607	chr1	156901271	156901630	+	0	NA	intron (NM_001080471, intron 1 of 22)	intron (NM_001080471, intron 1 of 22)	7732	NM_001353683	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
16932	chr1	155906651	155906950	+	0	NA	intron (NM_001256821, intron 3 of 5)	intron (NM_001256821, intron 3 of 5)	4118	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
177415	chr4	112303651	112303750	+	0	NA	intron (NM_001253884, intron 1 of 14)	intron (NM_001253884, intron 1 of 14)	6331	NM_001102406	80216		NM_025144	ENSG00000073331	ALPK1	8430410J10Rik|LAK|ROSAH	alpha kinase 1	protein-coding
192407	chr6	24844251	24844550	+	0	NA	intron (NM_001286447, intron 12 of 13)	intron (NM_001286447, intron 12 of 13)	32870	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
83715	chr16	28501121	28501800	+	0	NA	intron (NM_145659, intron 4 of 4)	(CACACA)n|Simple_repeat|Simple_repeat	5374	NM_145659	246778		NM_145659	ENSG00000197272	IL27	IL-27|IL-27A|IL27A|IL27p28|IL30|p28	interleukin 27	protein-coding
39081	chr11	47996301	47996700	+	0	NA	intron (NM_002843, intron 1 of 24)	MIRb|SINE|MIR	15941	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
175398	chr4	70836921	70837250	+	0	NA	intron (NM_002092, intron 1 of 9)	intron (NM_002092, intron 1 of 9)	2176	NM_001098477	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
71907	chr15	22757351	22758750	+	0	NA	intron (NR_040057, intron 1 of 4)	CpG	193	NR_040057	283683		NR_040057	ENSG00000274253	LOC283683	-	uncharacterized LOC283683	ncRNA
13629	chr1	116419601	116420100	+	0	NA	Intergenic	AluY|SINE|Alu	-1228	NR_027646	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
68149	chr14	75552571	75553130	+	0	NA	Intergenic	Intergenic	-25770	NM_017791	55640		NM_017791	ENSG00000119686	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2	FLVCR choline and putative heme transporter 2	protein-coding
83674	chr16	28371551	28372600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-9215	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
185225	chr5	122773371	122773930	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-1346	NM_001278199	6643		NM_003100	ENSG00000205302	SNX2	TRG-9	sorting nexin 2	protein-coding
29425	chr10	70283451	70284030	+	0	NA	5' UTR (NM_022146, exon 1 of 4)	5' UTR (NM_022146, exon 1 of 4)	264	NM_022146	64106		NM_022146	ENSG00000148734	NPFFR1	GPR147|NPFF1|NPFF1R1|OT7T022	neuropeptide FF receptor 1	protein-coding
139502	chr2	224535351	224535800	+	0	NA	exon (NM_001257198, exon 3 of 16)	exon (NM_001257198, exon 3 of 16)	34380	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
105933	chr18	3586851	3586950	+	0	NA	intron (NM_001242765, intron 4 of 8)	intron (NM_001242765, intron 4 of 8)	-7214	NR_024101	649446		NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
207871	chr7	50374021	50374550	+	0	NA	intron (NM_001291840, intron 2 of 2)	MER8|DNA|TcMar-Tigger	55237	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
224042	chr9	3502801	3503980	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	-13956	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
21751	chr1	206890551	206890930	+	0	NA	Intergenic	Intergenic	-6703	NM_001185158	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
72453	chr15	32344751	32345350	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	-2373	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
25759	chr10	10855351	10855450	+	0	NA	intron (NM_001326320, intron 3 of 16)	MER130|DNA|DNA	56675	NM_001326326	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
116969	chr19	18869401	18870100	+	0	NA	intron (NM_021267, intron 7 of 7)	CpG	26408	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
29373	chr10	69820801	69821000	+	0	NA	intron (NM_001368884, intron 1 of 36)	MIRb|SINE|MIR	18994	NM_080805	1305		NM_005203	ENSG00000197467	COL13A1	CMS19|COLXIIIA1	collagen type XIII alpha 1 chain	protein-coding
33599	chr10	119529971	119530330	+	0	NA	intron (NM_001005339, intron 1 of 4)	intron (NM_001005339, intron 1 of 4)	6383	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
226507	chr9	71794551	71794650	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-26087	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
48269	chr12	8681921	8682380	+	0	NA	intron (NM_001352267, intron 1 of 5)	MER21C|LTR|ERVL	473	NM_001352267	57494		NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding
145177	chr20	38866421	38867100	+	0	NA	intron (NM_001172735, intron 2 of 9)	L1MB5|LINE|L1	-59657	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
167318	chr3	128731321	128732150	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSc|SINE|Alu	5552	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
147964	chr20	62975201	62975430	+	0	NA	Intergenic	Intergenic	22606	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
179785	chr5	343751	344950	+	0	NA	intron (NR_165159, intron 4 of 13)	(GT)n|Simple_repeat|Simple_repeat	21740	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
150028	chr21	37266621	37268450	+	0	NA	promoter-TSS (NM_006052)	promoter-TSS (NM_006052)	-201	NM_006052	10311		NM_006052	ENSG00000157538	VPS26C	DCRA|DSCR3|DSCRA	VPS26 endosomal protein sorting factor C	protein-coding
118320	chr19	35541851	35543200	+	0	NA	exon (NM_014364, exon 6 of 11)	exon (NM_014364, exon 6 of 11)	-3101	NM_001242598	10430		NM_032635	ENSG00000105677	TMEM147	NEDFLPH|NIFIE14	transmembrane protein 147	protein-coding
56451	chr12	113980471	113980950	+	0	NA	Intergenic	Intergenic	-14385	NM_001146699	9904		NM_016196	ENSG00000122965	RBM19	Mrd1	RNA binding motif protein 19	protein-coding
42667	chr11	72581171	72581330	+	0	NA	intron (NM_001243784, intron 23 of 30)	MIRb|SINE|MIR	10594	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
164093	chr3	56584151	56584450	+	0	NA	intron (NR_148371, intron 9 of 19)	SVA_C|Retroposon|SVA	27125	NM_001141947	285331		NM_001012506	ENSG00000180376	CCDC66	-	coiled-coil domain containing 66	protein-coding
66122	chr14	60151521	60152750	+	0	NA	intron (NM_001322282, intron 3 of 5)	intron (NM_001322282, intron 3 of 5)	13263	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
11418	chr1	89721171	89721900	+	0	NA	Intergenic	Intergenic	88415	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
224199	chr9	5453071	5454000	+	0	NA	intron (NR_052005, intron 1 of 7)	intron (NR_052005, intron 1 of 7)	2993	NM_001314029	29126		NM_014143	ENSG00000120217	CD274	B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1|hPD-L1	CD274 molecule	protein-coding
165495	chr3	99884501	99884900	+	0	NA	intron (NM_182909, intron 4 of 5)	intron (NM_182909, intron 4 of 5)	-8497	NM_001282793	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
208870	chr7	73735971	73736280	+	0	NA	TTS (NM_148912)	TTS (NM_148912)	1056	NR_026690	171022		NR_026690		ABHD11-AS1	LINC00035|NCRNA00035|WBSCR26	ABHD11 antisense RNA 1 (tail to tail)	ncRNA
206556	chr7	35650371	35650530	+	0	NA	intron (NM_022373, intron 5 of 8)	L1MA4A|LINE|L1	44685	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
114412	chr19	12656851	12657450	+	0	NA	intron (NM_001173498, intron 11 of 23)	CpG-13788	9592	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
58034	chr12	124438871	124440030	+	0	NA	intron (NM_001077261, intron 9 of 47)	GA-rich|Low_complexity|Low_complexity	-102208	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
154492	chr22	35656871	35657030	+	0	NA	intron (NM_030641, intron 2 of 2)	intron (NM_030641, intron 2 of 2)	8504	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
144762	chr20	36615101	36615380	+	0	NA	exon (NM_032214, exon 6 of 8)	exon (NM_032214, exon 6 of 8)	9461	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
208345	chr7	66494871	66495030	+	0	NA	intron (NR_134570, intron 1 of 1)	AluY|SINE|Alu	1259	NR_134571	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
104858	chr17	81848771	81849130	+	0	NA	intron (NM_000918, intron 4 of 10)	AluSz|SINE|Alu	11585	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
158964	chr3	10239771	10240200	+	0	NA	intron (NM_001570, intron 12 of 12)	AluSx|SINE|Alu	-8474	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
10801	chr1	77756001	77756830	+	0	NA	intron (NM_201626, intron 1 of 21)	intron (NM_201626, intron 1 of 21)	3437	NM_001377431	23032		NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
189024	chr5	168987551	168987850	+	0	NA	intron (NM_003062, intron 4 of 35)	intron (NM_003062, intron 4 of 35)	-25527	NR_109897	728095		NR_109897		SLIT3-AS1	-	SLIT3 antisense RNA 1	ncRNA
10495	chr1	66426271	66426630	+	0	NA	Intergenic	LTR12F|LTR|ERV1	71915	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
140154	chr2	231608151	231608800	+	0	NA	Intergenic	Intergenic	15611	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
183714	chr5	80995721	80995980	+	0	NA	intron (NM_006909, intron 1 of 26)	AluSx|SINE|Alu	-34943	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
225598	chr9	36148271	36149300	+	0	NA	intron (NM_001287010, intron 3 of 3)	intron (NM_001287010, intron 3 of 3)	12000	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
45508	chr11	118689721	118690880	+	0	NA	Intergenic	Intergenic	-10650	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
10108	chr1	59018301	59018930	+	0	NA	Intergenic	L2b|LINE|L2	-1861	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
946	chr1	1742151	1742450	+	0	NA	intron (NM_182838, intron 1 of 5)	AluSx1|SINE|Alu	3699	NM_182838	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
236443	chrX	71540501	71541180	+	0	NA	intron (NM_181672, intron 3 of 21)	AluSq2|SINE|Alu	7736	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
137373	chr2	196181301	196181500	+	0	NA	Intergenic	AluJr4|SINE|Alu	-9822	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
10460	chr1	66316871	66317230	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-15058	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
91207	chr17	3916301	3917950	+	0	NA	promoter-TSS (NM_002558)	promoter-TSS (NM_002558)	-660	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
174218	chr4	37722121	37722580	+	0	NA	Intergenic	Intergenic	-35974	NM_001085400	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
24859	chr10	557701	558100	+	0	NA	intron (NM_014974, intron 1 of 36)	G-rich|Low_complexity|Low_complexity	-70664	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
31977	chr10	100745371	100746800	+	0	NA	5' UTR (NM_000278, exon 1 of 10)	5' UTR (NM_000278, exon 1 of 10)	503	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
160091	chr3	18827621	18828430	+	0	NA	Intergenic	Intergenic	-320485	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
230358	chr9	128060671	128062330	+	0	NA	3' UTR (NM_197956, exon 2 of 2)	3' UTR (NM_197956, exon 2 of 2)	5820	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
234990	chrX	39750971	39751130	+	0	NA	Intergenic	Intergenic	-86511	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
199504	chr6	118682571	118683180	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	27200	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
68946	chr14	91395201	91395780	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	22330	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
110749	chr19	2339401	2339800	+	0	NA	intron (NM_152988, intron 5 of 14)	CpG-13185	10916	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
117321	chr19	19512101	19512300	+	0	NA	Intergenic	AluJr|SINE|Alu	3348	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
85665	chr16	56278671	56279530	+	0	NA	intron (NM_020988, intron 3 of 8)	intron (NM_020988, intron 3 of 8)	33580	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
9750	chr1	53306251	53306780	+	0	NA	intron (NM_017522, intron 2 of 15)	MIR3|SINE|MIR	21555	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
134140	chr2	134179371	134179930	+	0	NA	intron (NM_001371457, intron 1 of 16)	MIR|SINE|MIR	52525	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
172022	chr4	989571	990100	+	0	NA	exon (NM_213613, exon 4 of 4)	exon (NM_213613, exon 4 of 4)	2791	NM_000203	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
183613	chr5	80215751	80215850	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	40248	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
234646	chrX	20120601	20121000	+	0	NA	Intergenic	AluJb|SINE|Alu	-3893	NM_001168466	256714		NM_152780	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
196950	chr6	52663001	52664000	+	0	NA	promoter-TSS (NR_024405)	promoter-TSS (NR_024405)	-901	NR_024405	730101		NR_024403	ENSG00000291006	LOC730101	-	uncharacterized LOC730101	ncRNA
176307	chr4	87390921	87391880	+	0	NA	promoter-TSS (NM_016245)	promoter-TSS (NM_016245)	-212	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
166709	chr3	120742071	120743450	+	0	NA	promoter-TSS (NM_001363964)	promoter-TSS (NM_001363964)	16	NM_005513	2960		NM_005513	ENSG00000153767	GTF2E1	FE|TF2E1|TFIIE-A	general transcription factor IIE subunit 1	protein-coding
218459	chr8	48318751	48319250	+	0	NA	Intergenic	CpG	-232567	NR_105002	101929268		NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
109154	chr19	141071	141290	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	34034	NM_001005240	81099		NM_001005240	ENSG00000176695	OR4F17	OR4F11P|OR4F18|OR4F19|OR4F5	olfactory receptor family 4 subfamily F member 17	protein-coding
65030	chr14	39172221	39173150	+	0	NA	Intergenic	AluSz|SINE|Alu	-2352	NM_177452	122553		NM_177452	ENSG00000182400	TRAPPC6B	NEDMEBA|TPC6	trafficking protein particle complex subunit 6B	protein-coding
152981	chr22	23139971	23140130	+	0	NA	intron (NM_014433, intron 2 of 6)	AluJr4|SINE|Alu	1940	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
83096	chr16	22448721	22449180	+	0	NA	intron (NR_027154, intron 1 of 28)	AluJb|SINE|Alu	-11235	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
223844	chr9	12421	12880	+	0	NA	intron (NR_051986, intron 1 of 2)	intron (NR_051986, intron 1 of 2)	663	NR_051986	100287596		NR_051986		DDX11L5	-	DEAD/H-box helicase 11 like 5 (pseudogene)	pseudo
7019	chr1	31916151	31916250	+	0	NA	intron (NM_001369859, intron 3 of 6)	AluSg|SINE|Alu	21618	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
85690	chr16	56452311	56452780	+	0	NA	5' UTR (NM_001324358, exon 1 of 13)	5' UTR (NM_001324358, exon 1 of 13)	461	NM_001324358	55239		NM_018233	ENSG00000087263	OGFOD1	TPA1	2-oxoglutarate and iron dependent oxygenase domain containing 1	protein-coding
142980	chr20	20022521	20022800	+	0	NA	intron (NM_016100, intron 2 of 5)	intron (NM_016100, intron 2 of 5)	4865	NM_181527	51126		NM_016100	ENSG00000173418	NAA20	MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein-coding
63636	chr14	20723421	20723730	+	0	NA	Intergenic	CpG	-22312	NM_006683	10876		NM_006683	ENSG00000181562	EDDM3A	EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1	epididymal protein 3A	protein-coding
196600	chr6	44229801	44230200	+	0	NA	exon (NM_001078175, exon 6 of 14)	exon (NM_001078175, exon 6 of 14)	6405	NM_001372327	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
200175	chr6	130701721	130702130	+	0	NA	Intergenic	L1PA7|LINE|L1	-125481	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
44520	chr11	107593971	107594230	+	0	NA	intron (NM_001308018, intron 1 of 12)	intron (NM_001308018, intron 1 of 12)	2953	NM_018712	55531		NM_018712	ENSG00000110675	ELMOD1	-	ELMO domain containing 1	protein-coding
231025	chr9	129586551	129587030	+	0	NA	Intergenic	Intergenic	-22094	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
79130	chr16	224451	225280	+	0	NA	intron (NM_018032, intron 2 of 8)	intron (NM_018032, intron 2 of 8)	4584	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
58817	chr12	132826451	132826750	+	0	NA	intron (NM_001172557, intron 1 of 15)	intron (NM_001172557, intron 1 of 15)	1789	NM_005895	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
199165	chr6	111744151	111744650	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	14731	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
57411	chr12	121833701	121834080	+	0	NA	Intergenic	AluSx|SINE|Alu	24969	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
36020	chr11	2912371	2913180	+	0	NA	intron (NM_183233, intron 5 of 10)	intron (NM_183233, intron 5 of 10)	-9200	NR_169304	5003		NM_007105	ENSG00000254827	SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	SLC22A18 antisense RNA	ncRNA
115848	chr19	16527951	16528580	+	0	NA	intron (NM_006387, intron 8 of 16)	intron (NM_006387, intron 8 of 16)	14172	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
11594	chr1	91571401	91571600	+	0	NA	Intergenic	Intergenic	70392	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
34299	chr10	131977371	131977930	+	0	NA	intron (NM_004052, intron 1 of 5)	MLT1A0|LTR|ERVL-MaLR	4363	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
98842	chr17	48437001	48437200	+	0	NA	Intergenic	Intergenic	-6886	NM_001075099	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
228433	chr9	99825511	99826100	+	0	NA	5' UTR (NM_006981, exon 2 of 8)	5' UTR (NM_006981, exon 2 of 8)	3920	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
41646	chr11	66508301	66508700	+	0	NA	intron (NM_001256670, intron 16 of 16)	intron (NM_001256670, intron 16 of 16)	-2135	NM_024649	582		NM_024649	ENSG00000174483	BBS1	BBS2L2	Bardet-Biedl syndrome 1	protein-coding
62691	chr13	102771551	102771850	+	0	NA	intron (NM_138779, intron 1 of 5)	HAL1|LINE|L1	2086	NR_104590	93081		NM_138779	ENSG00000151287	TEX30	C13orf27	testis expressed 30	protein-coding
60059	chr13	33204201	33204480	+	0	NA	intron (NM_001243476, intron 5 of 17)	intron (NM_001243476, intron 5 of 17)	1684	NM_052851	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
44671	chr11	110454801	110455000	+	0	NA	intron (NM_004109, intron 2 of 3)	MIR|SINE|MIR	24952	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
210724	chr7	100609271	100609900	+	0	NA	Intergenic	L2a|LINE|L2	-2577	NM_001040097	64598		NM_023948	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
107274	chr18	44358271	44358630	+	0	NA	intron (NR_110792, intron 2 of 4)	L1PA16|LINE|L1	173247	NR_110792	101927921		NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
157470	chr22	45290771	45291850	+	0	NA	intron (NM_006953, intron 4 of 5)	(TG)n|Simple_repeat|Simple_repeat	6361	NM_001167574	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
147471	chr20	59102921	59103180	+	0	NA	Intergenic	MIR|SINE|MIR	-20338	NM_001384354	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
82031	chr16	12078871	12079450	+	0	NA	intron (NM_032167, intron 11 of 20)	intron (NM_032167, intron 11 of 20)	102426	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
72216	chr15	30179751	30180700	+	0	NA	Intergenic	Intergenic	-15811	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
237972	chrX	134023971	134024130	+	0	NA	Intergenic	L2b|LINE|L2	-38456	NM_001164618	2719		NM_004484	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
51962	chr12	53766921	53767180	+	0	NA	Intergenic	Intergenic	-10016	NR_104332	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
132177	chr2	101805221	101805480	+	0	NA	intron (NM_001384572, intron 2 of 29)	L1ME3A|LINE|L1	107085	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
202179	chr6	155973401	155973600	+	0	NA	Intergenic	Intergenic	26703	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
172944	chr4	3522351	3523050	+	0	NA	intron (NR_110005, intron 2 of 7)	CpG	9449	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
101245	chr17	66285051	66285430	+	0	NA	Intergenic	Intergenic	-17373	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
165219	chr3	72960651	72961150	+	0	NA	intron (NR_138564, intron 5 of 6)	intron (NR_138564, intron 5 of 6)	-35843	NM_001318026	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
92119	chr17	7590801	7591080	+	0	NA	promoter-TSS (NM_006942)	promoter-TSS (NM_006942)	-846	NM_006942	6665		NM_006942	ENSG00000129194	SOX15	SOX20|SOX26|SOX27	SRY-box transcription factor 15	protein-coding
32426	chr10	102485221	102485480	+	0	NA	intron (NM_005736, intron 5 of 10)	intron (NM_005736, intron 5 of 10)	17362	NM_005736	10121		NM_005736	ENSG00000138107	ACTR1A	ARP1|Arp1A|CTRN1	actin related protein 1A	protein-coding
123829	chr19	55219701	55220100	+	0	NA	Intergenic	AluY|SINE|Alu	8863	NM_001372013	255043		NM_173804	ENSG00000180089	TMEM86B	-	transmembrane protein 86B	protein-coding
210623	chr7	100444401	100445680	+	0	NA	Intergenic	Intergenic	-8543	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
97583	chr17	44101951	44102380	+	0	NA	intron (NM_001382393, intron 3 of 26)	MER91A|DNA|hAT-Tip100	-13747	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
42444	chr11	69302371	69302530	+	0	NA	Intergenic	Intergenic	8295	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
166631	chr3	119581901	119582430	+	0	NA	5' UTR (NM_001125, exon 3 of 5)	5' UTR (NM_001125, exon 3 of 5)	2673	NM_001371092	141		NM_001125	ENSG00000144843	ADPRH	ARH1|hARH1	ADP-ribosylarginine hydrolase	protein-coding
1072	chr1	1916971	1917350	+	0	NA	TTS (NM_178545)	TTS (NM_178545)	1900	NM_138705	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
227722	chr9	93048621	93049050	+	0	NA	Intergenic	MER74A|LTR|ERVL	-9853	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
188278	chr5	151123901	151124580	+	0	NA	intron (NM_001193544, intron 14 of 24)	intron (NM_001193544, intron 14 of 24)	17444	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
96829	chr17	41962721	41963580	+	0	NA	intron (NM_031421, intron 11 of 11)	intron (NM_031421, intron 11 of 11)	-3645	NM_033133	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
64959	chr14	36069421	36069750	+	0	NA	promoter-TSS (NR_073454)	promoter-TSS (NR_073454)	-842	NR_073454	101101773		NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
225566	chr9	35932801	35933150	+	0	NA	Intergenic	L1MB3|LINE|L1	23485	NM_001348107	158376		NM_001348107	ENSG00000235387	SPAAR	LINC00961|SPAR	small regulatory polypeptide of amino acid response	protein-coding
28846	chr10	62554751	62554930	+	0	NA	Intergenic	Intergenic	-179713	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
211526	chr7	105346221	105347500	+	0	NA	intron (NM_001350742, intron 2 of 16)	(A)n|Simple_repeat|Simple_repeat	42061	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
230671	chr9	128713851	128714550	+	0	NA	exon (NM_013355, exon 11 of 22)	exon (NM_013355, exon 11 of 22)	9927	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
177299	chr4	109609571	109609730	+	0	NA	intron (NM_017918, intron 1 of 7)	MER41A|LTR|ERV1	49404	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
31624	chr10	97381401	97382400	+	0	NA	intron (NM_015179, intron 10 of 33)	intron (NM_015179, intron 10 of 33)	19440	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
153514	chr22	26511451	26511550	+	0	NA	intron (NM_001346858, intron 2 of 15)	intron (NM_001346858, intron 2 of 15)	973	NM_012143	24144		NM_012143	ENSG00000100109	TFIP11	NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6	tuftelin interacting protein 11	protein-coding
113594	chr19	10283071	10283230	+	0	NA	intron (NM_000201, intron 2 of 6)	AluSx|SINE|Alu	-3805	NM_001039132	3386		NM_001544	ENSG00000105371	ICAM4	CD242|LW	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	protein-coding
87106	chr16	68605421	68605880	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-39660	NM_001317196	1001		NM_001793	ENSG00000062038	CDH3	CDHP|HJMD|PCAD	cadherin 3	protein-coding
189942	chr5	177398751	177399130	+	0	NA	TTS (NM_003052)	TTS (NM_003052)	1721	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
207077	chr7	39959151	39960080	+	0	NA	intron (NM_003718, intron 1 of 13)	AluSz|SINE|Alu	9255	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
137079	chr2	190915671	190915980	+	0	NA	intron (NM_014905, intron 7 of 17)	Charlie2b|DNA|hAT-Charlie	35004	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
21519	chr1	205804501	205804750	+	0	NA	intron (NM_173854, intron 2 of 10)	intron (NM_173854, intron 2 of 10)	8573	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
25511	chr10	7255821	7256280	+	0	NA	intron (NM_001029880, intron 7 of 20)	intron (NM_001029880, intron 7 of 20)	-69266	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
112745	chr19	7382601	7382800	+	0	NA	intron (NM_001367823, intron 8 of 28)	intron (NM_001367823, intron 8 of 28)	-12445	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
125189	chr2	10124501	10125250	+	0	NA	intron (NR_164157, intron 5 of 12)	intron (NR_164157, intron 5 of 12)	2136	NM_001034	6241		NM_001034	ENSG00000171848	RRM2	C2orf48|R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
111574	chr19	4062701	4063330	+	0	NA	intron (NM_015898, intron 1 of 2)	intron (NM_015898, intron 1 of 2)	2514	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
164393	chr3	58349871	58350430	+	0	NA	intron (NM_001349498, intron 1 of 17)	intron (NM_001349498, intron 1 of 17)	16844	NM_001349498	54899		NM_017771	ENSG00000168297	PXK	MONAKA|SLOB	PX domain containing serine/threonine kinase like	protein-coding
179100	chr4	168509771	168510200	+	0	NA	intron (NM_001166108, intron 1 of 21)	intron (NM_001166108, intron 1 of 21)	12933	NM_001166108	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
39170	chr11	57348621	57349080	+	0	NA	intron (NM_002559, intron 6 of 11)	intron (NM_002559, intron 6 of 11)	10498	NM_002559	5024		NM_002559	ENSG00000109991	P2RX3	P2X3	purinergic receptor P2X 3	protein-coding
83326	chr16	24745421	24745680	+	0	NA	intron (NM_001330520, intron 2 of 23)	intron (NM_001330520, intron 2 of 23)	15899	NM_014494	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
118020	chr19	34181871	34182030	+	0	NA	intron (NM_001384434, intron 1 of 9).2	L2|LINE|L2	9446	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
208521	chr7	70316651	70317000	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	718350	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
222522	chr8	140563901	140564300	+	0	NA	intron (NM_012154, intron 3 of 18)	intron (NM_012154, intron 3 of 18)	52104	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
150328	chr21	42061651	42063300	+	0	NA	promoter-TSS (NM_001199528)	promoter-TSS (NM_001199528)	-402	NM_001199527	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
167018	chr3	126331871	126332030	+	0	NA	Intergenic	L1PA2|LINE|L1	25458	NM_014079	28999		NM_014079	ENSG00000163884	KLF15	KKLF	KLF transcription factor 15	protein-coding
93542	chr17	19056621	19057100	+	0	NA	Intergenic	AluY|SINE|Alu	-5052	NR_003924	780852		NR_003924		SNORD3B-2	U3-2B|U3b2	small nucleolar RNA, C/D box 3B-2	snoRNA
14973	chr1	147966471	147967230	+	0	NA	intron (NM_016334, intron 8 of 13)	MIR3|SINE|MIR	38430	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
180682	chr5	21340301	21340500	+	0	NA	Intergenic	Intergenic	-119080	NR_027027	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
5212	chr1	24980001	24980300	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-15140	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
117545	chr19	21018071	21018900	+	0	NA	Intergenic	Intergenic	-2172	NM_001172671	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
224342	chr9	6783821	6784080	+	0	NA	intron (NR_148677, intron 1 of 21)	intron (NR_148677, intron 1 of 21)	25977	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
79721	chr16	1321501	1322350	+	0	NA	intron (NM_194259, intron 7 of 7)	intron (NM_194259, intron 7 of 7)	-11720	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
104677	chr17	81501171	81501480	+	0	NA	Intergenic	AluJb|SINE|Alu	11474	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
234679	chrX	20264451	20264550	+	0	NA	intron (NM_004586, intron 1 of 21)	MIRb|SINE|MIR	2409	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
93054	chr17	17439951	17440480	+	0	NA	Intergenic	Intergenic	-36785	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
44869	chr11	114196271	114196650	+	0	NA	intron (NM_001354751, intron 4 of 6)	intron (NM_001354751, intron 4 of 6)	-61346	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
71455	chr14	105818001	105818200	+	0	NA	Intergenic	Intergenic	39472	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA
33687	chr10	120423351	120423450	+	0	NA	Intergenic	Intergenic	-33554	NM_001318169	196051		NM_001030059	ENSG00000203805	PLPP4	DPPL2|PPAPDC1|PPAPDC1A	phospholipid phosphatase 4	protein-coding
43619	chr11	83186501	83188100	+	0	NA	non-coding (NR_133914, exon 1 of 1)	non-coding (NR_133914, exon 1 of 1)	184	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
16371	chr1	154351221	154351530	+	0	NA	TTS (NM_001370596)	TTS (NM_001370596)	22577	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
110776	chr19	2425621	2425880	+	0	NA	3' UTR (NM_012458, exon 3 of 3)	3' UTR (NM_012458, exon 3 of 3)	1836	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
207226	chr7	43678271	43678730	+	0	NA	intron (NM_001321199, intron 1 of 6)	L1M4|LINE|L1	51023	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
71937	chr15	23039031	23040450	+	0	NA	promoter-TSS (NM_001354374)	promoter-TSS (NM_001354374)	-67	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
175098	chr4	54226771	54227130	+	0	NA	Intergenic	CpG	-2343	NM_001347828	5156		NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
158132	chr22	50169621	50171050	+	0	NA	promoter-TSS (NR_027691)	promoter-TSS (NR_027691)	-396	NR_027691	56666		NM_052839	ENSG00000073150	PANX2	PX2|hPANX2	pannexin 2	protein-coding
92317	chr17	8131921	8132880	+	0	NA	Intergenic	AluJb|SINE|Alu	-8294	NM_001165967	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
16902	chr1	155871651	155871950	+	0	NA	intron (NM_152280, intron 2 of 3)	intron (NM_152280, intron 2 of 3)	12233	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
27744	chr10	35185521	35185980	+	0	NA	intron (NM_183012, intron 4 of 5)	intron (NM_183012, intron 4 of 5)	-9377	NM_001267569	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
17637	chr1	157133051	157134280	+	0	NA	3' UTR (NM_005240, exon 4 of 4)	3' UTR (NM_005240, exon 4 of 4)	4730	NM_001145312	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
105751	chr18	2755571	2755930	+	0	NA	intron (NM_015295, intron 34 of 47)	AluY|SINE|Alu	-91256	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
23546	chr1	229258071	229258700	+	0	NA	non-coding (NR_149312, exon 3 of 3)	non-coding (NR_149312, exon 3 of 3)	-12677	NR_073545	5867		NM_004578	ENSG00000168118	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
32648	chr10	103757751	103758380	+	0	NA	intron (NM_014631, intron 3 of 13)	MIRb|SINE|MIR	11286	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
1115	chr1	2091651	2092100	+	0	NA	intron (NM_001242874, intron 1 of 14)	intron (NM_001242874, intron 1 of 14)	-12841	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
135278	chr2	159895321	159896080	+	0	NA	intron (NM_001198760, intron 2 of 37)	intron (NM_001198760, intron 2 of 37)	9056	NM_002349	4065		NM_002349	ENSG00000054219	LY75	CD205|CLEC13B|DEC-205|GP200-MR6|LY-75	lymphocyte antigen 75	protein-coding
196422	chr6	43426821	43428900	+	0	NA	promoter-TSS (NR_146762)	promoter-TSS (NR_146762)	-3	NR_146762	89845		NM_033450	ENSG00000124574	ABCC10	EST182763|MRP7|SIMRP7	ATP binding cassette subfamily C member 10	protein-coding
184447	chr5	99526951	99527130	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-6950	NR_110562	102724855		NR_110562		LINC02113	CTD-2151A2.1	long intergenic non-protein coding RNA 2113	ncRNA
10073	chr1	58778051	58778610	+	0	NA	Intergenic	Intergenic	5717	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
151055	chr21	44705821	44706080	+	0	NA	intron (NM_001272037, intron 1 of 12)	MER11C|LTR|ERVK	5622	NM_144991	54084		NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|ECTD14|STHAG10|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding
79883	chr16	1538891	1539450	+	0	NA	intron (NM_024600, intron 1 of 2)	(ACGGCCTC)n|Simple_repeat|Simple_repeat	5504	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
57150	chr12	121246851	121247550	+	0	NA	intron (NM_172215, intron 13 of 15)	intron (NM_172215, intron 13 of 15)	27385	NM_001270486	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
163625	chr3	52050671	52051230	+	0	NA	exon (NM_001947, exon 3 of 3)	exon (NM_001947, exon 3 of 3)	5621	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
187981	chr5	149491701	149491900	+	0	NA	Intergenic	Intergenic	58565	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
154985	chr22	37298921	37299380	+	0	NA	intron (NM_001318024, intron 5 of 12)	intron (NM_001318024, intron 5 of 12)	16642	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
10286	chr1	64842821	64843280	+	0	NA	intron (NM_001321857, intron 17 of 24)	intron (NM_001321857, intron 17 of 24)	97975	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
102968	chr17	76713001	76713880	+	0	NA	3' UTR (NM_001081461, exon 7 of 7)	3' UTR (NM_001081461, exon 7 of 7)	-2475	NM_001008529	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
5681	chr1	26353771	26354130	+	0	NA	intron (NM_001039775, intron 1 of 19)	intron (NM_001039775, intron 1 of 19)	180	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
216362	chr8	17594001	17594200	+	0	NA	intron (NM_001372073, intron 2 of 5)	L1MB1|LINE|L1	16884	NM_001372073	5157		NM_006207	ENSG00000104213	PDGFRL	PDGRL|PRLTS	platelet derived growth factor receptor like	protein-coding
41428	chr11	66063601	66063800	+	0	NA	exon (NM_006842, exon 19 of 22)	exon (NM_006842, exon 19 of 22)	-6572	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
175066	chr4	54050501	54050900	+	0	NA	intron (NM_012110, intron 1 of 5)	Tigger3a|DNA|TcMar-Tigger	13905	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
137046	chr2	190881401	190883350	+	0	NA	intron (NM_014905, intron 1 of 17)	intron (NM_014905, intron 1 of 17)	1554	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
126761	chr2	30243821	30244130	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	12441	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
19191	chr1	172343371	172343880	+	0	NA	intron (NM_015569, intron 17 of 20)	intron (NM_015569, intron 17 of 20)	-77060	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
87939	chr16	79380521	79382250	+	0	NA	Intergenic	Intergenic	219352	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
191818	chr6	14717201	14717650	+	0	NA	Intergenic	Intergenic	-431971	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
70042	chr14	100112871	100113430	+	0	NA	intron (NM_016337, intron 3 of 13)	L2c|LINE|L2	3495	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
96560	chr17	40440951	40442250	+	0	NA	Intergenic	Intergenic	-1850	NM_001552	3487		NM_001552	ENSG00000141753	IGFBP4	BP-4|HT29-IGFBP|IBP4|IGFBP-4	insulin like growth factor binding protein 4	protein-coding
176801	chr4	102525371	102525530	+	0	NA	intron (NM_001382625, intron 2 of 24)	intron (NM_001382625, intron 2 of 24)	-22964	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
159997	chr3	18357621	18357880	+	0	NA	intron (NM_001322873, intron 9 of 10)	intron (NM_001322873, intron 9 of 10)	67589	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
119917	chr19	41705421	41705980	+	0	NA	Intergenic	Intergenic	-2926	NM_004363	1048		NM_004363	ENSG00000105388	CEACAM5	CD66e|CEA	CEA cell adhesion molecule 5	protein-coding
52342	chr12	55001301	55001500	+	0	NA	Intergenic	Intergenic	-16638	NM_001136030	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
198888	chr6	109480851	109481350	+	0	NA	exon (NM_001164313, exon 2 of 2)	exon (NM_001164313, exon 2 of 2)	2119	NM_014797	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
87288	chr16	70056471	70057450	+	0	NA	intron (NR_003610, intron 1 of 25)	AluJo|SINE|Alu	8988	NR_003610	283970		NM_199134	ENSG00000196696	PDXDC2P-NPIPB14P	-	PDXDC2P-NPIPB14P readthrough, transcribed pseudogene	pseudo
19898	chr1	183889221	183889480	+	0	NA	intron (NM_015149, intron 9 of 18)	intron (NM_015149, intron 9 of 18)	84230	NM_001297671	23179		NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
195803	chr6	41076251	41076680	+	0	NA	intron (NM_001329684, intron 1 of 7)	intron (NM_001329684, intron 1 of 7)	3491	NM_021705	4800		NM_002505	ENSG00000001167	NFYA	CBF-A|CBF-B|HAP2|NF-YA	nuclear transcription factor Y subunit alpha	protein-coding
182470	chr5	62339051	62339450	+	0	NA	intron (NM_001243952, intron 2 of 20)	MSTA|LTR|ERVL-MaLR	33044	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
13210	chr1	112641501	112642150	+	0	NA	intron (NM_006135, intron 1 of 9)	AluSz|SINE|Alu	21993	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
124943	chr2	8588251	8589100	+	0	NA	Intergenic	Intergenic	-4883	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
96595	chr17	40531071	40532150	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	28784	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
227895	chr9	93960151	93960830	+	0	NA	Intergenic	CpG	4656	NR_144455	101928040		NR_144455	ENSG00000235601	BARX1-DT	BARX1-AS1	BARX1 divergent transcript	ncRNA
61797	chr13	75372351	75372680	+	0	NA	intron (NM_014832, intron 1 of 20)	AluSx1|SINE|Alu	109653	NM_001286659	9882		NM_014832	ENSG00000136111	TBC1D4	AS160|NIDDM5	TBC1 domain family member 4	protein-coding
203708	chr7	1048121	1048380	+	0	NA	intron (NM_001303473, intron 1 of 1)	intron (NM_001303473, intron 1 of 1)	3704	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
70554	chr14	102552701	102552900	+	0	NA	intron (NR_146561, intron 2 of 2)	intron (NR_146561, intron 2 of 2)	7546	NR_146561	105370681		NR_146561	ENSG00000259230	LINC02323	-	long intergenic non-protein coding RNA 2323	ncRNA
102996	chr17	76751671	76752450	+	0	NA	intron (NR_148239, intron 7 of 12)	intron (NR_148239, intron 7 of 12)	14382	NM_001242532	79157		NM_024311	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
126490	chr2	28399251	28400480	+	0	NA	intron (NM_005253, intron 1 of 3)	MER58A|DNA|hAT-Charlie	-5193	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
205032	chr7	6516271	6517030	+	0	NA	intron (NM_001145118, intron 7 of 21)	LTR13_|LTR|ERVK	-32498	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
102640	chr17	76028101	76028300	+	0	NA	promoter-TSS (NM_001988)	promoter-TSS (NM_001988)	-894	NM_001988	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
71306	chr14	105331771	105332330	+	0	NA	intron (NM_001100913, intron 1 of 24)	L1MEd|LINE|L1	-16473	NM_001242787	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
36390	chr11	4007051	4007750	+	0	NA	intron (NM_001382568, intron 2 of 11)	intron (NM_001382568, intron 2 of 11)	-87285	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
202146	chr6	155154251	155155100	+	0	NA	intron (NM_001384547, intron 6 of 25)	intron (NM_001384547, intron 6 of 25)	47688	NM_001384547	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
35102	chr11	640471	641080	+	0	NA	TTS (NM_000797)	TTS (NM_000797)	3506	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
114741	chr19	13214751	13215050	+	0	NA	intron (NM_023035, intron 38 of 46)	MIR|SINE|MIR	64489	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
74942	chr15	63766501	63766980	+	0	NA	intron (NM_003922, intron 2 of 77)	AluSp|SINE|Alu	67208	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
67174	chr14	68812671	68813230	+	0	NA	Intergenic	Intergenic	-16707	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
224193	chr9	5437371	5439050	+	0	NA	promoter-TSS (NM_018465)	promoter-TSS (NM_018465)	-285	NM_018465	55848		NM_018465	ENSG00000107020	PLGRKT	AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT)	plasminogen receptor with a C-terminal lysine	protein-coding
164099	chr3	56610901	56611450	+	0	NA	intron (NR_148366, intron 11 of 18)	L1PBa1|LINE|L1	52871	NM_015224	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
20700	chr1	200627921	200628830	+	0	NA	Intergenic	Intergenic	-7624	NM_014875	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
7980	chr1	37919371	37919600	+	0	NA	intron (NR_158630, intron 7 of 24)	intron (NR_158630, intron 7 of 24)	12254	NM_001297434	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
176665	chr4	100095821	100096480	+	0	NA	Intergenic	Intergenic	-93883	NR_125924	101929353		NR_125924	ENSG00000249710	DDIT4L-AS1	-	DDIT4L antisense RNA 1	ncRNA
133405	chr2	118844401	118844600	+	0	NA	intron (NM_001426, intron 1 of 1)	intron (NM_001426, intron 1 of 1)	3148	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
36365	chr11	3946371	3947850	+	0	NA	intron (NM_001382571, intron 1 of 9)	(T)n|Simple_repeat|Simple_repeat	91048	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
117827	chr19	30666371	30666530	+	0	NA	intron (NM_001352260, intron 5 of 5)	intron (NM_001352260, intron 5 of 5)	294066	NM_001352260	9745		NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
105939	chr18	3598121	3598730	+	0	NA	intron (NM_001242765, intron 4 of 8)	intron (NM_001242765, intron 4 of 8)	4311	NR_024101	649446		NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
81875	chr16	11672601	11673450	+	0	NA	intron (NM_003498, intron 1 of 1)	intron (NM_003498, intron 1 of 1)	4570	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
235937	chrX	53222721	53223250	+	0	NA	intron (NR_148672, intron 1 of 26)	intron (NR_148672, intron 1 of 26)	2222	NR_148673	8242		NM_004187	ENSG00000126012	KDM5C	DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169	lysine demethylase 5C	protein-coding
52708	chr12	56574271	56574430	+	0	NA	intron (NM_002898, intron 5 of 13)	MER119|DNA|hAT-Charlie	52530	NM_002898	5939		NM_002898	ENSG00000076067	RBMS2	SCR3	RNA binding motif single stranded interacting protein 2	protein-coding
169206	chr3	156825751	156827400	+	0	NA	5' UTR (NM_001193283, exon 1 of 5)	5' UTR (NM_001193283, exon 1 of 5)	222	NM_001193283	389170		NM_001004316	ENSG00000197980	LEKR1	-	leucine, glutamate and lysine rich 1	protein-coding
53517	chr12	66859921	66860180	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-55781	NM_001379348	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
116963	chr19	18863301	18864650	+	0	NA	intron (NM_001297549, intron 19 of 23)	intron (NM_001297549, intron 19 of 23)	32016	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
164142	chr3	56756051	56756150	+	0	NA	intron (NM_001289698, intron 3 of 10)	intron (NM_001289698, intron 3 of 10)	19617	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
16679	chr1	155191001	155191400	+	0	NA	exon (NM_001371720, exon 3 of 12)	exon (NM_001371720, exon 3 of 12)	1709	NM_001204287	4582		NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|ADTKD2|CA 15-3|CD227|Ca15-3|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding
233245	chr9	137259951	137260250	+	0	NA	intron (NM_015456, intron 4 of 12)	AluY|SINE|Alu	4773	NM_015456	25920		NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
86624	chr16	67414371	67414930	+	0	NA	intron (NM_013304, intron 1 of 10)	intron (NM_013304, intron 1 of 10)	1827	NM_001323627	29800		NM_013304	ENSG00000159714	ZDHHC1	C16orf1|DHHC-1|HSU90653|ZNF377	zinc finger DHHC-type containing 1	protein-coding
196657	chr6	44311921	44312180	+	0	NA	intron (NM_020745, intron 2 of 21)	intron (NM_020745, intron 2 of 21)	1297	NM_020745	57505		NM_020745	ENSG00000124608	AARS2	AARSL|COXPD8|LKENP|MT-ALARS|MTALARS	alanyl-tRNA synthetase 2, mitochondrial	protein-coding
209181	chr7	75395351	75395730	+	0	NA	promoter-TSS (NM_198853).2	promoter-TSS (NM_198853).2	-79	NR_003602	541473		NM_001013748	ENSG00000290834	FKBP6P2	-	FKBP6 pseudogene 2	pseudo
4240	chr1	19559001	19559600	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	37532	NR_135054	105378614		NR_135054	ENSG00000235185	MICOS10-DT	-	MICOS10 divergent transcript	ncRNA
226256	chr9	67720521	67721180	+	0	NA	Intergenic	SST1|Satellite|centr	-1671	NR_103833	100131997		NR_103833	ENSG00000274026	FAM27E3	-	family with sequence similarity 27 member E3	ncRNA
71548	chr14	106257471	106258130	+	0	NA	Intergenic	Intergenic	-29874	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
174674	chr4	41877701	41878100	+	0	NA	Intergenic	Intergenic	4711	NR_104143	101927074		NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA
82945	chr16	21864251	21864550	+	0	NA	TTS (NR_024456).3	TTS (NR_024456).3	2335	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
38312	chr11	43942151	43942950	+	0	NA	promoter-TSS (NM_001145033)	promoter-TSS (NM_001145033)	-87	NM_001145033	387763		NM_001145033	ENSG00000187479	C11orf96	AG2	chromosome 11 open reading frame 96	protein-coding
205298	chr7	11035771	11035930	+	0	NA	intron (NM_014660, intron 8 of 16)	intron (NM_014660, intron 8 of 16)	61978	NR_033436	9678		NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
77190	chr15	80693201	80693600	+	0	NA	Intergenic	AluSz|SINE|Alu	-1910	NM_021214	58489		NM_021214	ENSG00000136379	ABHD17C	FAM108C1	abhydrolase domain containing 17C, depalmitoylase	protein-coding
177026	chr4	107035351	107035650	+	0	NA	exon (NM_014421, exon 1 of 4)	exon (NM_014421, exon 1 of 4)	813	NM_014421	27123		NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
98211	chr17	46137651	46138700	+	0	NA	intron (NM_015443, intron 2 of 14).2	Tigger4a|DNA|TcMar-Tigger	54607	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
69345	chr14	93961171	93961330	+	0	NA	intron (NM_001202429, intron 2 of 9)	MIRc|SINE|MIR	-4203	NM_016150	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
188136	chr5	150400371	150400530	+	0	NA	TTS (NM_001135245)	TTS (NM_001135245)	12306	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
176350	chr4	88380521	88381230	+	0	NA	intron (NM_017912, intron 1 of 22)	L1ME4a|LINE|L1	2023	NM_001165136	55008		NM_017912	ENSG00000138642	HERC6	-	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein-coding
223434	chr8	143960371	143961380	+	0	NA	intron (NM_000445, intron 2 of 32)	L1ME4b|LINE|L1	-7041	NM_201379	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
196907	chr6	52360371	52360530	+	0	NA	Intergenic	Intergenic	-1701	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
211895	chr7	111561471	111562780	+	0	NA	5' UTR (NM_032549, exon 1 of 6)	5' UTR (NM_032549, exon 1 of 6)	367	NM_001350960	83943		NM_032549	ENSG00000184903	IMMP2L	IMMP2L-IT1|IMP2|IMP2-LIKE	inner mitochondrial membrane peptidase subunit 2	protein-coding
62197	chr13	97975271	97978130	+	0	NA	exon (NM_002271, exon 4 of 29)	exon (NM_002271, exon 4 of 29)	23025	NM_002271	3843		NM_002271	ENSG00000065150	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding
44177	chr11	96245601	96246100	+	0	NA	intron (NM_032427, intron 1 of 4)	AluSg|SINE|Alu	-95588	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
38588	chr11	46240551	46241280	+	0	NA	Intergenic	AluSq2|SINE|Alu	-36747	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
142687	chr20	7936501	7936700	+	0	NA	intron (NM_017545, intron 1 of 7)	intron (NM_017545, intron 1 of 7)	3858	NM_017545	54363		NM_017545	ENSG00000101323	HAO1	GO|GOX|GOX1|HAOX1	hydroxyacid oxidase 1	protein-coding
77165	chr15	80057151	80057450	+	0	NA	Intergenic	L1MB8|LINE|L1	-2268	NM_001242918	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
90500	chr17	1452401	1452780	+	0	NA	intron (NM_016823, intron 1 of 2)	AluSq2|SINE|Alu	3642	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
63172	chr13	113723101	113723480	+	0	NA	intron (NM_002929, intron 4 of 6)	(TG)n|Simple_repeat|Simple_repeat	27799	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
118593	chr19	36527921	36529420	+	0	NA	promoter-TSS (NM_001375596)	promoter-TSS (NM_001375596)	-399	NM_001166037	339324		NM_001012756	ENSG00000254004	ZNF260	OZRF1|PEX1|ZFP260	zinc finger protein 260	protein-coding
158513	chr3	3133451	3133930	+	0	NA	intron (NM_182916, intron 2 of 7)	intron (NM_182916, intron 2 of 7)	6750	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
9445	chr1	49979611	49980380	+	0	NA	intron (NR_136623, intron 1 of 12)	Tigger2b_Pri|DNA|TcMar-Tigger	43959	NM_001323575	84871		NM_032785	ENSG00000186094	AGBL4	CCP6	AGBL carboxypeptidase 4	protein-coding
26760	chr10	22712821	22713900	+	0	NA	intron (NM_005028, intron 1 of 9)	CpG	748	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
30305	chr10	75283371	75283530	+	0	NA	intron (NR_120651, intron 1 of 3)	intron (NR_120651, intron 1 of 3)	-12933	NR_038224	253264		NR_038223	ENSG00000226051	ZNF503-AS1	-	ZNF503 antisense RNA 1	ncRNA
173486	chr4	9166071	9166230	+	0	NA	Intergenic	Intergenic	-7023	NM_001358418	100287045		NM_001358418	ENSG00000229924	FAM90A26	FAM90A26P	family with sequence similarity 90 member A26	protein-coding
186288	chr5	134552701	134553100	+	0	NA	intron (NM_001289985, intron 4 of 11)	AluJb|SINE|Alu	26792	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
99067	chr17	48943901	48945300	+	0	NA	intron (NM_001317192, intron 1 of 7)	intron (NM_001317192, intron 1 of 7)	242	NR_133679	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
51495	chr12	52114271	52114430	+	0	NA	Intergenic	SATR2|Satellite|Satellite	20781	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
55809	chr12	108734101	108735430	+	0	NA	Intergenic	L2b|LINE|L2	-3247	NM_014325	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
51801	chr12	53387651	53387950	+	0	NA	intron (NM_138473, intron 3 of 5)	AluY|SINE|Alu	7156	NM_003109	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
142719	chr20	8751421	8751780	+	0	NA	intron (NM_015192, intron 23 of 31)	intron (NM_015192, intron 23 of 31)	-79585	NR_004386	26767		NR_004386	ENSG00000201348	RNU105B	105B|E1-2	RNA, U105B small nucleolar	snoRNA
174773	chr4	47827551	47827850	+	0	NA	intron (NM_006587, intron 1 of 21)	intron (NM_006587, intron 1 of 21)	-3645	NR_125880	101927179		NR_125880	ENSG00000282917	LOC101927179	-	uncharacterized LOC101927179	ncRNA
112469	chr19	6392721	6394180	+	0	NA	promoter-TSS (NR_106848)	promoter-TSS (NR_106848)	-286	NM_002096	2962		NM_002096	ENSG00000125651	GTF2F1	BTF4|RAP74|TF2F1|TFIIF	general transcription factor IIF subunit 1	protein-coding
1746	chr1	6000721	6001450	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	8409	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
162040	chr3	46699721	46699980	+	0	NA	intron (NM_001370524, intron 1 of 3)	MIRb|SINE|MIR	-1542	NM_147196	259236		NM_147196	ENSG00000181585	TMIE	DFNB6	transmembrane inner ear	protein-coding
236833	chrX	79211351	79211450	+	0	NA	Intergenic	L1PA3|LINE|L1	66712	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
51108	chr12	50057301	50058080	+	0	NA	promoter-TSS (NM_020039)	promoter-TSS (NM_020039)	94	NR_046389	41		NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding
26795	chr10	23342851	23343150	+	0	NA	promoter-TSS (NR_155752)	promoter-TSS (NR_155752)	-957	NR_155752	105376453		NR_155752	ENSG00000224215	C10orf67-AS1	-	C10orf67 antisense RNA 1	ncRNA
81020	chr16	4255021	4255280	+	0	NA	Intergenic	AluSz|SINE|Alu	-1361	NR_039999	100507501		NR_039999		LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA
51460	chr12	52055571	52055730	+	0	NA	intron (NM_173157, intron 2 of 6)	intron (NM_173157, intron 2 of 6)	4208	NM_173157	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
151583	chr21	46635071	46636210	+	0	NA	promoter-TSS (NM_001242866)	promoter-TSS (NM_001242866)	-34	NM_206962	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
145342	chr20	41136501	41138400	+	0	NA	promoter-TSS (NM_002660)	promoter-TSS (NM_002660)	-93	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
160873	chr3	33439201	33441680	+	0	NA	promoter-TSS (NM_001128161)	promoter-TSS (NM_001128161)	-35	NM_014517	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
115867	chr19	16560051	16560150	+	0	NA	intron (NM_024881, intron 4 of 5)	L1MD2|LINE|L1	12315	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
150686	chr21	43661871	43662430	+	0	NA	intron (NM_015056, intron 1 of 15)	intron (NM_015056, intron 1 of 15)	2590	NM_015056	23076		NM_015056	ENSG00000160208	RRP1B	KIAA0179|NNP1L|Nnp1|PPP1R136|RRP1	ribosomal RNA processing 1B	protein-coding
76835	chr15	77436071	77436430	+	0	NA	intron (NM_001304505, intron 1 of 9)	L2a|LINE|L2	15362	NM_001304504	10363		NM_018200	ENSG00000140382	HMG20A	HMGX1|HMGXB1	high mobility group 20A	protein-coding
104699	chr17	81535171	81535750	+	0	NA	intron (NM_012418, intron 2 of 4)	(CATCCC)n|Simple_repeat|Simple_repeat	7083	NM_012418	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
121827	chr19	47957451	47957550	+	0	NA	Intergenic	Intergenic	1818	NR_024220	100170225		NR_024220		SNAR-C1	-	small NF90 (ILF3) associated RNA C1	snRNA
43311	chr11	76233251	76233350	+	0	NA	Intergenic	Intergenic	-26798	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
234697	chrX	20420151	20420250	+	0	NA	Intergenic	Intergenic	-153291	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
181783	chr5	50774601	50775200	+	0	NA	intron (NM_024615, intron 7 of 25)	SVA_B|Retroposon|SVA	107486	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
239418	chrY	56677951	56678630	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-275965	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
75606	chr15	67114821	67115830	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	-10391	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
42483	chr11	69918651	69919330	+	0	NA	Intergenic	CpG	-66917	NM_001378092	55107		NM_018043	ENSG00000131620	ANO1	DOG1|INDMS|MYMY7|ORAOV2|TAOS2|TMEM16A	anoctamin 1	protein-coding
97544	chr17	44068671	44068830	+	0	NA	Intergenic	L2b|LINE|L2	-1163	NM_152344	124801		NM_152344	ENSG00000161654	LSM12	PNAS-135	LSM12 homolog	protein-coding
93746	chr17	19873471	19873630	+	0	NA	Intergenic	Intergenic	-5614	NM_001142610	9706		NM_014683	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
145193	chr20	38884821	38885480	+	0	NA	intron (NM_001172735, intron 2 of 9)	AluJr4|SINE|Alu	-41267	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
78623	chr15	94234251	94234750	+	0	NA	intron (NR_169532, intron 1 of 23)	Arthur1C|DNA|hAT-Tip100	2939	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
5172	chr1	24934871	24935630	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-4974	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
127574	chr2	42650451	42650550	+	0	NA	intron (NM_001282755, intron 7 of 17)	AluY|SINE|Alu	81868	NM_001330443	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
110465	chr19	2011851	2012150	+	0	NA	intron (NM_017797, intron 1 of 8)	AluSx3|SINE|Alu	3714	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
164077	chr3	54285451	54285550	+	0	NA	intron (NM_018398, intron 2 of 37)	L1PA4|LINE|L1	162948	NM_018398	55799		NM_018398	ENSG00000157445	CACNA2D3	HSA272268	calcium voltage-gated channel auxiliary subunit alpha2delta 3	protein-coding
222726	chr8	141385851	141385950	+	0	NA	Intergenic	Intergenic	-6121	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
107485	chr18	47177301	47177500	+	0	NA	Intergenic	MER67B|LTR|ERV1	-1036	NM_016097	51124		NM_016097	ENSG00000134049	IER3IP1	HSPC039|MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
46270	chr11	124793621	124794000	+	0	NA	intron (NM_001352400, intron 1 of 4)	intron (NM_001352400, intron 1 of 4)	6596	NM_024631	79684		NM_024631	ENSG00000120458	MSANTD2	C11orf61	Myb/SANT DNA binding domain containing 2	protein-coding
140715	chr2	234421451	234421550	+	0	NA	Intergenic	Intergenic	33095	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
23308	chr1	228079101	228079530	+	0	NA	Intergenic	Intergenic	-2765	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
183155	chr5	75062751	75062850	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-10242	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
62029	chr13	87677451	87678380	+	0	NA	exon (NM_015567, exon 2 of 2)	exon (NM_015567, exon 2 of 2)	4691	NM_001384610	26050		NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	SLIT and NTRK like family member 5	protein-coding
206880	chr7	37661701	37661900	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-21966	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
2642	chr1	10388171	10388330	+	0	NA	Intergenic	Intergenic	-10814	NM_002631	5226		NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
97052	chr17	42347801	42348000	+	0	NA	intron (NM_001369519, intron 2 of 23)	MSTA|LTR|ERVL-MaLR	40542	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
215109	chr7	155310701	155311100	+	0	NA	TTS (NM_001346591)	TTS (NM_001346591)	13022	NM_005542	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
188713	chr5	157312351	157313200	+	0	NA	intron (NM_014376, intron 11 of 30)	intron (NM_014376, intron 11 of 30)	32902	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
121545	chr19	47248401	47248730	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7960	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
30456	chr10	79103251	79103750	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	34534	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
14062	chr1	120778651	120778950	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-26756	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
107618	chr18	48931751	48932450	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	10707	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
17720	chr1	158931201	158931780	+	0	NA	promoter-TSS (NM_198929)	promoter-TSS (NM_198929)	-62	NM_152501	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
153963	chr22	30360301	30360500	+	0	NA	intron (NM_001017437, intron 1 of 11)	AluY|SINE|Alu	-3506	NM_005877	10291		NM_005877	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	splicing factor 3a subunit 1	protein-coding
73000	chr15	40680171	40680330	+	0	NA	Intergenic	L1MA3|LINE|L1	14855	NR_040058	100505648		NR_040058	ENSG00000245849	RAD51-AS1	TODRA	RAD51 antisense RNA 1	ncRNA
1275	chr1	2317671	2318430	+	0	NA	Intergenic	CpG	34611	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
237788	chrX	129788621	129788880	+	0	NA	intron (NM_018990, intron 3 of 7)	intron (NM_018990, intron 3 of 7)	8801	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
110572	chr19	2147651	2148330	+	0	NA	intron (NM_001374799, intron 1 of 31)	AluYc|SINE|Alu	3576	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
185890	chr5	132747031	132748380	+	0	NA	exon (NM_001287253, exon 1 of 6)	exon (NM_001287253, exon 1 of 6)	260	NM_001287252	645121		NM_001039780	ENSG00000205089	CCNI2	-	cyclin I family member 2	protein-coding
103025	chr17	76998001	76998900	+	0	NA	Intergenic	LTR35B|LTR|ERV1	-29251	NR_136417	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
23742	chr1	232580551	232580650	+	0	NA	intron (NM_001377488, intron 1 of 21)	LTR49|LTR|ERV1	49533	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
184331	chr5	96944321	96944580	+	0	NA	intron (NM_005575, intron 1 of 17)	MER4D|LTR|ERV1	8370	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
50594	chr12	48651071	48651600	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	3183	NR_002968	677815		NR_002968	ENSG00000221491	SNORA2C	ACA34|MIR1291|SNORA34	small nucleolar RNA, H/ACA box 2C	snoRNA
115438	chr19	15318051	15318950	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	14039	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
157335	chr22	44658721	44659380	+	0	NA	Intergenic	Intergenic	-9497	NM_001017529	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
184004	chr5	90866321	90866580	+	0	NA	intron (NR_003149, intron 83 of 89)	intron (NR_003149, intron 83 of 89)	307653	NM_032119	84059		NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
109715	chr19	1073351	1073450	+	0	NA	intron (NM_012292, intron 3 of 22)	L2c|LINE|L2	2190	NM_001282335	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
228843	chr9	112181001	112181680	+	0	NA	Intergenic	Intergenic	-6043	NM_001282643	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
83113	chr16	22494501	22495300	+	0	NA	Intergenic	AluSz6|SINE|Alu	-9549	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
192344	chr6	24402751	24403650	+	0	NA	exon (NM_001286265, exon 1 of 10)	exon (NM_001286265, exon 1 of 10)	264	NM_020662	57380		NM_020662	ENSG00000124532	MRS2	HPT|MRS2L	magnesium transporter MRS2	protein-coding
18245	chr1	161052071	161052680	+	0	NA	intron (NM_001025598, intron 8 of 11)	intron (NM_001025598, intron 8 of 11)	-6398	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
205266	chr7	8152201	8153000	+	0	NA	intron (NM_001350838, intron 6 of 11)	(CAC)n|Simple_repeat|Simple_repeat	109567	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
181684	chr5	50553471	50553900	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-112246	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
29488	chr10	70579571	70580060	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	22926	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
86977	chr16	68199051	68199550	+	0	NA	intron (NM_173165, intron 9 of 9)	AluYh3|SINE|Alu	34199	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
175232	chr4	56966121	56966380	+	0	NA	intron (NM_032313, intron 5 of 6)	AluSg4|SINE|Alu	11356	NM_032313	84273		NM_032313	ENSG00000084092	NOA1	C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1	nitric oxide associated 1	protein-coding
35094	chr11	631951	632250	+	0	NA	Intergenic	AluJb|SINE|Alu	-4919	NM_021920	6343		NM_021920	ENSG00000070031	SCT	-	secretin	protein-coding
58618	chr12	132493601	132494430	+	0	NA	intron (NM_001382740, intron 1 of 11)	G-rich|Low_complexity|Low_complexity	3864	NM_001382740	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
27056	chr10	27142951	27143550	+	0	NA	intron (NM_139312, intron 4 of 19)	AluSp|SINE|Alu	11134	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
194524	chr6	33301901	33302100	+	0	NA	intron (NM_172209, intron 6 of 6).2	MER33|DNA|hAT-Charlie	-2612	NM_001243738	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
159979	chr3	17894571	17894730	+	0	NA	Intergenic	L1M1|LINE|L1	-67902	NR_161333	339862		NR_046199		BALR6	BALR-6	B-cell acute lymphoblastic leukemia associated long RNA 6	ncRNA
188614	chr5	157199501	157199850	+	0	NA	intron (NM_005546, intron 1 of 16)	MIRb|SINE|MIR	18835	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
10962	chr1	84213051	84213500	+	0	NA	intron (NM_002731, intron 8 of 9)	intron (NM_002731, intron 8 of 9)	31643	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
232976	chr9	136974021	136974380	+	0	NA	Intergenic	Intergenic	-3304	NM_000954	5730		NM_000954	ENSG00000107317	PTGDS	L-PGDS|LPGDS|PDS|PGD2|PGDS|PGDS2	prostaglandin D2 synthase	protein-coding
168892	chr3	152318001	152318330	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	19151	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
123410	chr19	53991771	53991930	+	0	NA	5' UTR (NM_031897, exon 1 of 2)	5' UTR (NM_031897, exon 1 of 2)	213	NM_031897	59285		NM_031897	ENSG00000130433	CACNG6	-	calcium voltage-gated channel auxiliary subunit gamma 6	protein-coding
36875	chr11	10508771	10509980	+	0	NA	promoter-TSS (NM_001190702)	promoter-TSS (NM_001190702)	-189	NM_001190702	100463486		NM_001190702		MTRNR2L8	HN8	MT-RNR2 like 8 (pseudogene)	pseudo
186693	chr5	138666551	138667450	+	0	NA	Intergenic	Intergenic	86309	NR_134245	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
131708	chr2	97759001	97759200	+	0	NA	intron (NM_015348, intron 39 of 40)	intron (NM_015348, intron 39 of 40)	25800	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
35968	chr11	2843421	2843680	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	18019	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
81365	chr16	4845351	4845650	+	0	NA	intron (NR_136700, intron 2 of 14)	intron (NR_136700, intron 2 of 14)	1788	NM_032569	84656		NM_032569	ENSG00000140632	GLYR1	BM045|HIBDL|N-PAC|NP60|NPAC|hNDF	glyoxylate reductase 1 homolog	protein-coding
205784	chr7	23597191	23598150	+	0	NA	intron (NM_138771, intron 1 of 3)	CpG	288	NM_138771	90693		NM_138771	ENSG00000169193	CCDC126	-	coiled-coil domain containing 126	protein-coding
74440	chr15	59412671	59413230	+	0	NA	Intergenic	Intergenic	-25236	NM_152450	145773		NM_152450	ENSG00000157470	FAM81A	-	family with sequence similarity 81 member A	protein-coding
27783	chr10	35434071	35434230	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	97276	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
5015	chr1	24484151	24484650	+	0	NA	Intergenic	Intergenic	-17944	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
122673	chr19	49877201	49878630	+	0	NA	promoter-TSS (NM_032375)	promoter-TSS (NM_032375)	213	NM_024682	79735		NM_024682	ENSG00000104946	TBC1D17	-	TBC1 domain family member 17	protein-coding
229931	chr9	126638851	126639150	+	0	NA	intron (NM_001174147, intron 2 of 7)	GA-rich|Low_complexity|Low_complexity	25072	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
80836	chr16	3490321	3490600	+	0	NA	Intergenic	AluJo|SINE|Alu	-4991	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
202222	chr6	156806301	156806500	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-26669	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
184837	chr5	111498121	111498700	+	0	NA	non-coding (NR_131754, exon 5 of 5)	non-coding (NR_131754, exon 5 of 5)	-13816	NR_040093	100505678		NR_040093	ENSG00000246859	STARD4-AS1	-	STARD4 antisense RNA 1	ncRNA
228221	chr9	97900271	97900430	+	0	NA	3' UTR (NM_001371658, exon 5 of 5)	3' UTR (NM_001371658, exon 5 of 5)	21831	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
232588	chr9	136402601	136402930	+	0	NA	3' UTR (NM_006643, exon 9 of 9)	3' UTR (NM_006643, exon 9 of 9)	-4328	NM_003086	6621		NM_003086	ENSG00000165684	SNAPC4	NEDRSO|PTFalpha|SNAP190	small nuclear RNA activating complex polypeptide 4	protein-coding
1227	chr1	2275851	2275950	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	47581	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
51073	chr12	49942501	49942700	+	0	NA	Intergenic	L2b|LINE|L2	-8137	NM_000486	359		NM_000486	ENSG00000167580	AQP2	AQP-CD|NDI2|WCH-CD	aquaporin 2	protein-coding
180339	chr5	6690851	6690950	+	0	NA	intron (NR_103771, intron 2 of 2)	(AC)n|Simple_repeat|Simple_repeat	16811	NR_103771	100505625		NR_103771	ENSG00000248677	LINC02102	-	long intergenic non-protein coding RNA 2102	ncRNA
135713	chr2	169079851	169080050	+	0	NA	intron (NM_001142270, intron 2 of 5)	GA-rich|Low_complexity|Low_complexity	-1157	NM_001142271	10170		NM_005771	ENSG00000073737	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4|hRoDH-E2	dehydrogenase/reductase 9	protein-coding
81390	chr16	5095051	5095850	+	0	NA	intron (NM_201598, intron 2 of 6)	intron (NM_201598, intron 2 of 6)	2345	NM_201400	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
79844	chr16	1448421	1449450	+	0	NA	intron (NM_001114331, intron 18 of 23)	intron (NM_001114331, intron 18 of 23)	-4446	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
91719	chr17	6639761	6641750	+	0	NA	promoter-TSS (NR_147087)	promoter-TSS (NR_147087)	-44	NM_001351225	9851		NM_014804	ENSG00000198920	KIAA0753	JBTS38|MNR|OFIP|SRTD21	KIAA0753	protein-coding
95711	chr17	38556671	38557480	+	0	NA	intron (NM_025248, intron 11 of 18)	intron (NM_025248, intron 11 of 18)	48877	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
164226	chr3	56928501	56929280	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	-11150	NR_046572	100874200		NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
132924	chr2	111429121	111430180	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	65511	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
51286	chr12	51219721	51220130	+	0	NA	Intergenic	Intergenic	-1863	NM_001330422	5463		NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
219634	chr8	80156251	80156350	+	0	NA	intron (NR_105035, intron 1 of 6)	MLT1G1|LTR|ERVL-MaLR	14821	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
8595	chr1	41492351	41492530	+	0	NA	Intergenic	Intergenic	-7757	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
130195	chr2	84458451	84459700	+	0	NA	intron (NM_003849, intron 1 of 8)	CpG	205	NM_003849	8802		NM_003849	ENSG00000163541	SUCLG1	GALPHA|MTDPS9|SUCLA1	succinate-CoA ligase GDP/ADP-forming subunit alpha	protein-coding
19697	chr1	181044201	181044830	+	0	NA	intron (NM_001310213, intron 3 of 6)	MER115|DNA|hAT-Tip100	10532	NM_001385162	3140		NM_001531	ENSG00000153029	MR1	HLALS	major histocompatibility complex, class I-related	protein-coding
196878	chr6	52063571	52064080	+	0	NA	intron (NM_170724, intron 13 of 60)	intron (NM_170724, intron 13 of 60)	23788	NM_138694	5314		NM_138694	ENSG00000170927	PKHD1	ARPKD|FCYT|FPC|PCYT|PKD4|TIGM1	PKHD1 ciliary IPT domain containing fibrocystin/polyductin	protein-coding
122774	chr19	50199871	50200230	+	0	NA	Intergenic	Intergenic	-3572	NM_001077186	79784		NM_024729	ENSG00000105357	MYH14	DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	myosin heavy chain 14	protein-coding
227526	chr9	91423171	91425430	+	0	NA	promoter-TSS (NM_005384)	promoter-TSS (NM_005384)	326	NM_001289999	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
230945	chr9	129417051	129417150	+	0	NA	Intergenic	Intergenic	-71560	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
138890	chr2	217785351	217786000	+	0	NA	Intergenic	Intergenic	-29082	NR_026597	729582		NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
144598	chr20	35802451	35802550	+	0	NA	intron (NM_016436, intron 2 of 17)	intron (NM_016436, intron 2 of 17)	30485	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
46750	chr11	129334051	129334150	+	0	NA	Intergenic	Intergenic	-41748	NM_003658	8538		NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
201405	chr6	145887971	145888330	+	0	NA	intron (NM_001370328, intron 30 of 31)	intron (NM_001370328, intron 30 of 31)	73274	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
208608	chr7	72954001	72955430	+	0	NA	promoter-TSS (NR_033323)	promoter-TSS (NR_033323)	48	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
27821	chr10	38024851	38024950	+	0	NA	intron (NR_136710, intron 4 of 4)	MER44B|DNA|TcMar-Tigger	14225	NM_001324177	7581		NM_006954	ENSG00000189180	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
225762	chr9	37303321	37303800	+	0	NA	intron (NM_001289119, intron 3 of 8)	intron (NM_001289119, intron 3 of 8)	-119136	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
54739	chr12	93751101	93751300	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	-13377	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
205683	chr7	23183301	23183500	+	0	NA	intron (NM_007342, intron 1 of 6)	AluSx1|SINE|Alu	1352	NM_001370444	11097		NM_007342	ENSG00000136243	NUP42	CG1|NLP-1|NLP1|NLP_1|NUPL2|UIP1|hCG1	nucleoporin 42	protein-coding
39527	chr11	61091601	61091830	+	0	NA	Intergenic	MIR3|SINE|MIR	-2248	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
211722	chr7	106900671	106901030	+	0	NA	intron (NM_001282426, intron 10 of 10)	L1PREC2|LINE|L1	35371	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
186794	chr5	139370751	139371180	+	0	NA	intron (NM_152685, intron 14 of 14)	AluSx1|SINE|Alu	12332	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
54568	chr12	92340901	92341300	+	0	NA	Intergenic	MIRb|SINE|MIR	-80431	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
207393	chr7	44213421	44213880	+	0	NA	3' UTR (NM_001363678, exon 6 of 6)	3' UTR (NM_001363678, exon 6 of 6)	12672	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
219733	chr8	81047671	81048400	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	64033	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
216530	chr8	21037571	21037930	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	63764	NR_033894	286114		NR_033894	ENSG00000253199	LINC02153	-	long intergenic non-protein coding RNA 2153	ncRNA
106031	chr18	8612451	8612700	+	0	NA	intron (NM_001025300, intron 1 of 5)	intron (NM_001025300, intron 1 of 5)	3130	NM_001025300	201475		NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding
179157	chr4	169757471	169758800	+	0	NA	promoter-TSS (NM_017867)	promoter-TSS (NM_017867)	-191	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
184496	chr5	100865701	100866230	+	0	NA	intron (NM_005668, intron 3 of 4)	intron (NM_005668, intron 3 of 4)	37317	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
208958	chr7	74186021	74186930	+	0	NA	intron (NM_022170, intron 1 of 6)	AluSz|SINE|Alu	-4723	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
204018	chr7	1914001	1914200	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	26471	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
106304	chr18	12873971	12874700	+	0	NA	intron (NM_080422, intron 1 of 9)	SVA_D|Retroposon|SVA	9902	NM_002828	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
20885	chr1	202142801	202143780	+	0	NA	intron (NM_001256129, intron 1 of 5)	intron (NM_001256129, intron 1 of 5)	1447	NM_138795	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
143056	chr20	21504851	21505650	+	0	NA	Intergenic	Intergenic	8814	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
135614	chr2	168160871	168161130	+	0	NA	intron (NM_013233, intron 5 of 17)	L1MC5a|LINE|L1	86595	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
104970	chr17	81975421	81975680	+	0	NA	Intergenic	AluSc|SINE|Alu	-2079	NM_001330528	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
66334	chr14	61433901	61434300	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	112657	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
27128	chr10	28217801	28218080	+	0	NA	intron (NM_173496, intron 4 of 18)	intron (NM_173496, intron 4 of 18)	64183	NM_173496	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
16168	chr1	153777721	153778000	+	0	NA	exon (NM_024330, exon 4 of 10).2	exon (NM_024330, exon 4 of 10).2	2453	NM_001317929	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
206752	chr7	36684071	36684430	+	0	NA	intron (NM_001177507, intron 1 of 19)	L1MC5|LINE|L1	40244	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
162454	chr3	48472171	48473930	+	0	NA	5' UTR (NM_001272082, exon 1 of 4)	5' UTR (NM_001272082, exon 1 of 4)	108	NM_001272082	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
144566	chr20	35765151	35765930	+	0	NA	Intergenic	AluSx3|SINE|Alu	-6475	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
102947	chr17	76681221	76682350	+	0	NA	intron (NR_130928, intron 3 of 3)	intron (NR_130928, intron 3 of 3)	6878	NM_001363769	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
147519	chr20	59207471	59208230	+	0	NA	intron (NM_178457, intron 4 of 5)	intron (NM_178457, intron 4 of 5)	44029	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
33181	chr10	113095651	113095750	+	0	NA	intron (NM_001146283, intron 5 of 12)	intron (NM_001146283, intron 5 of 12)	-30933	NM_001349871	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
232949	chr9	136943021	136943280	+	0	NA	intron (NM_018998, intron 3 of 8)	CpG-29168	1588	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
24696	chr1	247301821	247302080	+	0	NA	intron (NM_032752, intron 9 of 9)	intron (NM_032752, intron 9 of 9)	29917	NM_032752	84838		NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
168725	chr3	150756321	150756580	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	6719	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
16400	chr1	154432901	154433300	+	0	NA	intron (NM_001206866, intron 3 of 6)	intron (NM_001206866, intron 3 of 6)	-26536	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
207142	chr7	43261271	43261550	+	0	NA	intron (NM_001287059, intron 2 of 27)	intron (NM_001287059, intron 2 of 27)	110515	NR_037508	100500829		NR_037508	ENSG00000264069	MIR3943	-	microRNA 3943	ncRNA
100691	chr17	63826621	63828400	+	0	NA	promoter-TSS (NM_002805)	promoter-TSS (NM_002805)	79	NM_002805	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
2770	chr1	10716201	10716680	+	0	NA	intron (NM_017766, intron 2 of 15)	intron (NM_017766, intron 2 of 15)	80206	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
159946	chr3	17166551	17166650	+	0	NA	intron (NM_001349090, intron 21 of 21)	MER91C|DNA|hAT-Tip100	233404	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
60985	chr13	46721201	46721430	+	0	NA	intron (NM_001164211, intron 16 of 19)	intron (NM_001164211, intron 16 of 19)	75846	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
184468	chr5	100746621	100746880	+	0	NA	Intergenic	MIRc|SINE|MIR	69815	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
235630	chrX	48466671	48467280	+	0	NA	exon (NM_033518, exon 5 of 17)	exon (NM_033518, exon 5 of 17)	3285	NM_033518	92745		NM_033518	ENSG00000017483	SLC38A5	JM24|SN2|SNAT5|pp7194	solute carrier family 38 member 5	protein-coding
115361	chr19	15227751	15228050	+	0	NA	exon (NM_001142886, exon 7 of 8)	exon (NM_001142886, exon 7 of 8)	4548	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
177277	chr4	109472201	109472400	+	0	NA	intron (NM_001318085, intron 2 of 23)	L1MC4|LINE|L1	-16398	NR_030302	693161		NR_030302	ENSG00000207988	MIR576	MIRN576|hsa-mir-576	microRNA 576	ncRNA
33888	chr10	124461501	124462980	+	0	NA	intron (NM_001167880, intron 1 of 5)	MER33|DNA|hAT-Charlie	417	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
229759	chr9	125185571	125185950	+	0	NA	intron (NM_001123369, intron 1 of 5)	AluSp|SINE|Alu	4043	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
135136	chr2	157435951	157436530	+	0	NA	intron (NM_004288, intron 1 of 7)	intron (NM_004288, intron 1 of 7)	7849	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
121321	chr19	46766551	46767350	+	0	NA	Intergenic	L2a|LINE|L2	17864	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
16861	chr1	155747221	155748730	+	0	NA	intron (NR_024117, intron 8 of 12).2	intron (NR_024117, intron 8 of 12).2	2207	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
28427	chr10	48305051	48305150	+	0	NA	Intergenic	L2b|LINE|L2	-1539	NM_001278547	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
35324	chr11	1037101	1037500	+	0	NA	promoter-TSS (NM_005961)	promoter-TSS (NM_005961)	-582	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
116514	chr19	18158401	18159600	+	0	NA	intron (NR_162071, intron 2 of 14)	AluSq2|SINE|Alu	5837	NR_162071	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
67921	chr14	74626951	74627250	+	0	NA	Intergenic	AluSq2|SINE|Alu	-14863	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
72524	chr15	34224251	34225780	+	0	NA	promoter-TSS (NM_001286420)	promoter-TSS (NM_001286420)	-1	NR_147140	51234		NM_016454	ENSG00000128463	EMC4	PIG17|TMEM85	ER membrane protein complex subunit 4	protein-coding
156594	chr22	41535971	41536130	+	0	NA	intron (NM_138338, intron 3 of 6)	AluSx3|SINE|Alu	8420	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
207099	chr7	40047751	40047850	+	0	NA	intron (NM_003718, intron 6 of 13)	intron (NM_003718, intron 6 of 13)	86822	NM_138701	136647		NM_138701	ENSG00000168303	MPLKIP	ABHS|C7orf11|ORF20|TTD4	M-phase specific PLK1 interacting protein	protein-coding
12006	chr1	95216421	95216830	+	0	NA	intron (NR_125949, intron 2 of 3)	L1PA6|LINE|L1	17357	NR_125949	101928118		NR_125948	ENSG00000226026	RWDD3-DT	-	RWDD3 divergent transcript	ncRNA
137097	chr2	190948851	190949150	+	0	NA	intron (NM_014905, intron 14 of 17)	intron (NM_014905, intron 14 of 17)	65171	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
94692	chr17	30655521	30656550	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	31717	NR_033420	6459		NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2	pseudo
148035	chr20	63178951	63179900	+	0	NA	TTS (NR_029670)	TTS (NR_029670)	925	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
32847	chr10	110057371	110057730	+	0	NA	intron (NM_016824, intron 1 of 14)	MER5B|DNA|hAT-Charlie	-49169	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
66653	chr14	63877571	63877730	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	24646	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
136203	chr2	174570421	174571000	+	0	NA	TTS (NM_001375836)	TTS (NM_001375836)	-12638	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
17838	chr1	159911801	159912000	+	0	NA	Intergenic	Intergenic	-11735	NM_012337	25790		NM_012337	ENSG00000213085	CFAP45	CCDC19|HTX11|NESG1	cilia and flagella associated protein 45	protein-coding
141152	chr2	239250721	239250980	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-54612	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
213875	chr7	142362371	142362730	+	0	NA	Intergenic	L1PA13|LINE|L1	-90301	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
44379	chr11	102563971	102564400	+	0	NA	Intergenic	Intergenic	-33438	NM_002423	4316		NM_002423	ENSG00000137673	MMP7	MMP-7|MPSL1|PUMP-1	matrix metallopeptidase 7	protein-coding
62399	chr13	99281321	99282400	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-23432	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
64085	chr14	22587021	22587280	+	0	NA	intron (NM_001344, intron 1 of 2)	intron (NM_001344, intron 1 of 2)	2074	NM_001344	1603		NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
237294	chrX	115719221	115719300	+	0	NA	Intergenic	Intergenic	-121704	NR_147173	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
149691	chr21	33945621	33946480	+	0	NA	intron (NR_038883, intron 2 of 2)	L1MC5|LINE|L1	14836	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
45346	chr11	118232621	118233280	+	0	NA	intron (NM_001286152, intron 5 of 5)	L2|LINE|L2	-7939	NM_001286570	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
8897	chr1	43932901	43933580	+	0	NA	promoter-TSS (NM_057091)	promoter-TSS (NM_057091)	-80	NM_057090	9048		NM_003976	ENSG00000117407	ARTN	ART|ENOVIN|EVN|NBN	artemin	protein-coding
132042	chr2	101007951	101008250	+	0	NA	TTS (NM_000993)	TTS (NM_000993)	5811	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
174120	chr4	36216771	36217330	+	0	NA	intron (NR_146894, intron 2 of 32)	L1ME2|LINE|L1	26889	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
213340	chr7	135508701	135511180	+	0	NA	5' UTR (NM_001008225, exon 1 of 11)	5' UTR (NM_001008225, exon 1 of 11)	162	NM_001190849	4850		NM_013316	ENSG00000080802	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex subunit 4	protein-coding
48182	chr12	8018821	8019850	+	0	NA	Intergenic	Intergenic	-13381	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
17131	chr1	156175871	156176030	+	0	NA	intron (NM_001370567, intron 13 of 13)	intron (NM_001370567, intron 13 of 13)	-18154	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
219116	chr8	65955671	65956630	+	0	NA	Intergenic	Intergenic	-58828	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
89999	chr16	89877271	89877430	+	0	NA	intron (NM_014972, intron 1 of 17)	AluJr|SINE|Alu	3758	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
182335	chr5	59125051	59125430	+	0	NA	intron (NM_001364603, intron 5 of 15)	intron (NM_001364603, intron 5 of 15)	-85764	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
107992	chr18	58673671	58674230	+	0	NA	intron (NM_173844, intron 1 of 15)	intron (NM_173844, intron 1 of 15)	-2077	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
15745	chr1	151132271	151132530	+	0	NA	3' UTR (NM_030913, exon 19 of 19)	3' UTR (NM_030913, exon 19 of 19)	14231	NM_030913	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
47066	chr12	561521	561780	+	0	NA	3' UTR (NM_173593, exon 20 of 20)	3' UTR (NM_173593, exon 20 of 20)	24836	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
159690	chr3	15556351	15556900	+	0	NA	Intergenic	Intergenic	-34919	NM_080539	8292		NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
119610	chr19	40764751	40765050	+	0	NA	intron (NM_004596, intron 5 of 5)	MER20|DNA|hAT-Charlie	-10260	NM_001202553	8190		NM_006533	ENSG00000261857	MIA	CD-RAP|MIA1	MIA SH3 domain containing	protein-coding
150263	chr21	41766551	41767350	+	0	NA	exon (NM_020639, exon 1 of 8)	exon (NM_020639, exon 1 of 8)	102	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
132199	chr2	102002201	102002680	+	0	NA	intron (NR_048564, intron 1 of 8)	(TCTGTG)n|Simple_repeat|Simple_repeat	3479	NR_048564	7850		NM_004633	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor type 2	protein-coding
180033	chr5	1054921	1056050	+	0	NA	intron (NM_006598, intron 22 of 23).2	intron (NM_006598, intron 22 of 23).2	7489	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
202197	chr6	156423901	156424450	+	0	NA	Intergenic	Intergenic	45425	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
29233	chr10	69088601	69089340	+	0	NA	intron (NM_001321054, intron 1 of 1)	intron (NM_001321054, intron 1 of 1)	867	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
212242	chr7	121385701	121386380	+	0	NA	intron (NM_001040020, intron 1 of 9)	intron (NM_001040020, intron 1 of 9)	10268	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
203577	chr7	913871	914030	+	0	NA	intron (NM_006869, intron 4 of 10)	intron (NM_006869, intron 4 of 10)	6939	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
128379	chr2	55029001	55029200	+	0	NA	intron (NM_001321904, intron 2 of 9)	MLT1A|LTR|ERVL-MaLR	18226	NM_001321863	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133579	chr2	121617121	121617600	+	0	NA	intron (NM_001142274, intron 1 of 37)	L2b|LINE|L2	32102	NM_001378005	23332		NM_015282	ENSG00000074054	CLASP1	MAST1	cytoplasmic linker associated protein 1	protein-coding
147752	chr20	62412821	62413080	+	0	NA	intron (NM_080833, intron 11 of 13)	intron (NM_080833, intron 11 of 13)	-5667	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
160324	chr3	27632251	27633630	+	0	NA	Intergenic	CpG	89383	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
157014	chr22	42530421	42531200	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-11014	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
142635	chr20	5674301	5674580	+	0	NA	Intergenic	Intergenic	-63434	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
11098	chr1	85464351	85465050	+	0	NA	intron (NM_001134445, intron 2 of 6)	CpG	459	NM_012137	23576		NM_012137	ENSG00000153904	DDAH1	DDAH|DDAH-1|DDAHI|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding
117094	chr19	19149201	19149400	+	0	NA	exon (NM_001367282, exon 3 of 8)	exon (NM_001367282, exon 3 of 8)	-10822	NM_001256766	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
107868	chr18	55152951	55153050	+	0	NA	Intergenic	Intergenic	-28694	NR_110743	101927229		NR_110743	ENSG00000267013	LINC01929	-	long intergenic non-protein coding RNA 1929	ncRNA
56904	chr12	120365701	120366100	+	0	NA	intron (NM_002442, intron 4 of 14)	MIRc|SINE|MIR	3264	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
206519	chr7	34513771	34513930	+	0	NA	intron (NR_033665, intron 2 of 3)	L1PA2|LINE|L1	-144368	NM_207172	387129		NM_207172	ENSG00000187258	NPSR1	ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
220999	chr8	115663271	115663930	+	0	NA	intron (NM_001282903, intron 1 of 6)	intron (NM_001282903, intron 1 of 6)	4413	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
110888	chr19	2663921	2664200	+	0	NA	intron (NM_052847, intron 1 of 4)	intron (NM_052847, intron 1 of 4)	33345	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
136517	chr2	177247271	177247430	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	8660	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
10796	chr1	77684921	77685180	+	0	NA	Intergenic	Intergenic	-1623	NM_001308237	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
40360	chr11	63978051	63978550	+	0	NA	Intergenic	AluSc|SINE|Alu	3680	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
182881	chr5	70024821	70025980	+	0	NA	5' UTR (NM_001178087, exon 1 of 3)	5' UTR (NM_001178087, exon 1 of 3)	149	NM_021967	8293		NM_021967	ENSG00000172058	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A	protein-coding
216003	chr8	8919301	8920550	+	0	NA	Intergenic	AluSz6|SINE|Alu	-26295	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
98151	chr17	46028351	46028650	+	0	NA	TTS (NM_001203251)	TTS (NM_001203251)	29250	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
146142	chr20	48663751	48664050	+	0	NA	intron (NM_020820, intron 15 of 39)	intron (NM_020820, intron 15 of 39)	164099	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
109701	chr19	1055621	1056380	+	0	NA	intron (NM_019112, intron 31 of 46)	intron (NM_019112, intron 31 of 46)	-9959	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
138642	chr2	210476221	210477000	+	0	NA	promoter-TSS (NM_001136574)	promoter-TSS (NM_001136574)	95	NM_001136574	10314		NM_006055	ENSG00000115365	LANCL1	GPR69A|p40	LanC like glutathione S-transferase 1	protein-coding
173895	chr4	24584021	24585500	+	0	NA	promoter-TSS (NM_001358)	promoter-TSS (NM_001358)	-206	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
67503	chr14	70947551	70948250	+	0	NA	intron (NM_014982, intron 2 of 35)	MER11B|LTR|ERVK	40441	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
229512	chr9	122370751	122371250	+	0	NA	promoter-TSS (NM_000962)	promoter-TSS (NM_000962)	-24	NM_001271164	5742		NM_000962	ENSG00000095303	PTGS1	COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS	prostaglandin-endoperoxide synthase 1	protein-coding
88680	chr16	85733351	85733650	+	0	NA	intron (NR_161452, intron 2 of 4)	L1MB3|LINE|L1	8200	NR_031731	100302261		NR_031731	ENSG00000283416	MIR1910	MIRN1910|hsa-mir-1910|mir-1910	microRNA 1910	ncRNA
25137	chr10	4130421	4130990	+	0	NA	Intergenic	LTR51|LTR|ERV1	78979	NR_120632								
146099	chr20	47677221	47678200	+	0	NA	intron (NM_198596, intron 8 of 20)	intron (NM_198596, intron 8 of 20)	108354	NM_018837	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
127225	chr2	38612621	38613150	+	0	NA	Intergenic	Intergenic	-9849	NM_001142650	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
40395	chr11	64028251	64028800	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	-7406	NM_013280	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
189391	chr5	172731671	172732250	+	0	NA	Intergenic	Intergenic	-23543	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
98858	chr17	48472221	48473080	+	0	NA	Intergenic	Intergenic	27817	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
89075	chr16	88463671	88463830	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	-5168	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
188864	chr5	159316771	159317080	+	0	NA	intron (NM_002187, intron 6 of 7)	intron (NM_002187, intron 6 of 7)	13562	NM_002187	3593		NM_002187	ENSG00000113302	IL12B	CLMF|CLMF2|IL-12B|IMD28|IMD29|NKSF|NKSF2	interleukin 12B	protein-coding
175150	chr4	55539101	55540300	+	0	NA	intron (NM_004898, intron 1 of 22)	intron (NM_004898, intron 1 of 22)	6232	NM_001267843	9575		NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
201742	chr6	149922901	149923730	+	0	NA	promoter-TSS (NR_130110)	promoter-TSS (NR_130110)	-194	NR_130110	353091		NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
7100	chr1	32107251	32108900	+	0	NA	promoter-TSS (NM_012316)	promoter-TSS (NM_012316)	19	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
194275	chr6	32627171	32627330	+	0	NA	Intergenic	Intergenic	-10156	NM_002122	3117		NM_002122	ENSG00000196735	HLA-DQA1	CELIAC1|DQ-A1|DQA1|HLA-DQA|HLA-DQA1*|HLA-DQB1	major histocompatibility complex, class II, DQ alpha 1	protein-coding
451	chr1	1129951	1130250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6917	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
136760	chr2	181334471	181334700	+	0	NA	intron (NR_130784, intron 3 of 4)	MER51B|LTR|ERV1	-28933	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
140701	chr2	234300251	234300780	+	0	NA	Intergenic	Intergenic	154080	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
139563	chr2	224931031	224931730	+	0	NA	intron (NM_001363762, intron 2 of 55)	intron (NM_001363762, intron 2 of 55)	15669	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
59363	chr13	24680171	24681150	+	0	NA	5' UTR (NM_001676, exon 1 of 23)	5' UTR (NM_001676, exon 1 of 23)	249	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
42238	chr11	68111501	68111900	+	0	NA	intron (NM_212469, intron 1 of 10)	L1MC1|LINE|L1	9688	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
218416	chr8	47599651	47599950	+	0	NA	intron (NM_001352944, intron 7 of 13)	intron (NM_001352944, intron 7 of 13)	-54288	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
120092	chr19	42128571	42128930	+	0	NA	intron (NM_001247994, intron 1 of 13)	MER5B|DNA|hAT-Charlie	3696	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
16201	chr1	153850671	153850830	+	0	NA	intron (NM_020699, intron 1 of 10)	AluSz|SINE|Alu	56803	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
152183	chr22	20102471	20102730	+	0	NA	intron (NM_022720, intron 9 of 13)	intron (NM_022720, intron 9 of 13)	12151	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
217297	chr8	27375621	27376280	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	50386	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
136491	chr2	177228251	177229050	+	0	NA	Intergenic	Intergenic	15856	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
150700	chr21	43716521	43716780	+	0	NA	Intergenic	Intergenic	-2479	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
211486	chr7	105141171	105141330	+	0	NA	intron (NM_182691, intron 10 of 14)	intron (NM_182691, intron 10 of 14)	127045	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
105	chr1	480601	480800	+	0	NA	Intergenic	AluJb|SINE|Alu	14745	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
42989	chr11	73958601	73959250	+	0	NA	5' UTR (NM_001377263, exon 3 of 9)	5' UTR (NM_001377263, exon 3 of 9)	7899	NM_001377263	374407		NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
32917	chr10	110214221	110215480	+	0	NA	intron (NM_001008541, intron 1 of 4)	(T)n|Simple_repeat|Simple_repeat	4619	NM_001008541	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
53720	chr12	68620101	68620800	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluSq2|SINE|Alu	6925	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
120149	chr19	42228021	42228280	+	0	NA	TTS (NM_001314033)	TTS (NM_001314033)	7838	NM_001314033	116115		NM_133444	ENSG00000167625	ZNF526	DENNED	zinc finger protein 526	protein-coding
3249	chr1	13810871	13812730	+	0	NA	intron (NM_012231, intron 8 of 9)	L2c|LINE|L2	62385	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
180500	chr5	14258101	14258300	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	114858	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
58538	chr12	132238051	132238150	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-32072	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
217122	chr8	25184121	25185200	+	0	NA	promoter-TSS (NM_001322810)	promoter-TSS (NM_001322810)	-29	NM_001322810	80005		NM_024940	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
109639	chr19	997701	997900	+	0	NA	Intergenic	AluJo|SINE|Alu	-2619	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
4787	chr1	23561021	23561300	+	0	NA	Intergenic	MIRc|SINE|MIR	-1659	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
112927	chr19	7677151	7677250	+	0	NA	intron (NM_174918, intron 1 of 6)	intron (NM_174918, intron 1 of 6)	143	NM_174918	199675		NM_174918	ENSG00000183019	MCEMP1	C19orf59	mast cell expressed membrane protein 1	protein-coding
5346	chr1	25266351	25267050	+	0	NA	intron (NR_135788, intron 1 of 3)	intron (NR_135788, intron 1 of 3)	1225	NR_135777	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
45004	chr11	116994451	116994550	+	0	NA	intron (NM_001281748, intron 1 of 24)	MIR|SINE|MIR	103928	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
79914	chr16	1709701	1709900	+	0	NA	intron (NM_001318852, intron 1 of 31)	intron (NM_001318852, intron 1 of 31)	3605	NM_001040439	23162		NM_015133	ENSG00000138834	MAPK8IP3	JIP-3|JIP3|JSAP1|NEDBA|SYD2|syd	mitogen-activated protein kinase 8 interacting protein 3	protein-coding
202008	chr6	152595451	152595750	+	0	NA	intron (NM_033071, intron 2 of 145)	intron (NM_033071, intron 2 of 145)	41251	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
8302	chr1	40054171	40055000	+	0	NA	intron (NM_001350484, intron 2 of 13)	intron (NM_001350484, intron 2 of 13)	13559	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
15827	chr1	151329221	151329480	+	0	NA	Intergenic	Intergenic	-1635	NM_001369623	5298		NM_002651	ENSG00000143393	PI4KB	DFNA87|NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIII|PI4KIIIBETA|PIK4CB	phosphatidylinositol 4-kinase beta	protein-coding
126632	chr2	28812151	28812800	+	0	NA	intron (NM_001142634, intron 1 of 6)	(AAGA)n|Simple_repeat|Simple_repeat	1641	NM_001142634	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
70126	chr14	100257551	100258080	+	0	NA	intron (NM_003403, intron 1 of 4)	intron (NM_003403, intron 1 of 4)	18671	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
6758	chr1	30737801	30738480	+	0	NA	intron (NM_006762, intron 5 of 7)	MLT1F1|LTR|ERVL-MaLR	1092	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
237439	chrX	119679851	119679950	+	0	NA	intron (NM_145799, intron 1 of 10)	intron (NM_145799, intron 1 of 10)	13268	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
107437	chr18	46222171	46222330	+	0	NA	intron (NM_001008239, intron 2 of 3)	intron (NM_001008239, intron 2 of 3)	48216	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
159842	chr3	16507621	16508250	+	0	NA	intron (NM_015150, intron 1 of 9)	intron (NM_015150, intron 1 of 9)	5764	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
221279	chr8	122810221	122810480	+	0	NA	intron (NM_014943, intron 1 of 3)	MIRb|SINE|MIR	28695	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
58769	chr12	132708351	132708450	+	0	NA	Intergenic	HAL1|LINE|L1	-2442	NM_001170544	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
165256	chr3	73101101	73101450	+	0	NA	Intergenic	Intergenic	39616	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
115789	chr19	16368711	16369400	+	0	NA	intron (NR_047665, intron 21 of 22)	intron (NR_047665, intron 21 of 22)	44229	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
190020	chr5	177494301	177495030	+	0	NA	intron (NM_203352, intron 2 of 12)	intron (NM_203352, intron 2 of 12)	2939	NR_103804	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
122145	chr19	48866401	48867130	+	0	NA	intron (NM_020904, intron 2 of 19)	intron (NM_020904, intron 2 of 19)	1852	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
22579	chr1	222792571	222792930	+	0	NA	Intergenic	MIRc|SINE|MIR	-22289	NR_165110	84976		NM_032890	ENSG00000154309	DISP1	DISPA	dispatched RND transporter family member 1	protein-coding
90229	chr17	581401	581600	+	0	NA	intron (NM_018289, intron 12 of 17)	intron (NM_018289, intron 12 of 17)	133339	NM_018289	55275		NM_018289	ENSG00000141252	VPS53	HCCS1|PCH2E|hVps53L|pp13624	VPS53 subunit of GARP complex	protein-coding
32725	chr10	104267021	104267700	+	0	NA	TTS (NR_039702)	TTS (NR_039702)	1045	NR_039702	100616323		NR_039702	ENSG00000266852	MIR4482	MIR4482-1|hsa-mir-4482-1	microRNA 4482	ncRNA
107896	chr18	56789671	56789830	+	0	NA	intron (NM_052834, intron 18 of 26)	intron (NM_052834, intron 18 of 26)	138053	NM_001382485	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
203320	chr6	170160221	170161100	+	0	NA	promoter-TSS (NR_125878)	promoter-TSS (NR_125878)	18	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
155697	chr22	39085451	39085550	+	0	NA	intron (NM_001349436, intron 5 of 7)	MER96B|DNA|hAT-Tip100	8225	NM_001349438	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
115617	chr19	16080101	16080900	+	0	NA	intron (NM_001367838, intron 1 of 8)	intron (NM_001367838, intron 1 of 8)	3484	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
61287	chr13	50152171	50153450	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	-19208	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
222995	chr8	143268951	143269050	+	0	NA	intron (NM_138465, intron 1 of 3)	AluSg4|SINE|Alu	1555	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
71083	chr14	104863821	104864080	+	0	NA	Intergenic	Intergenic	-1318	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
216309	chr8	12666671	12667100	+	0	NA	Intergenic	Intergenic	-1274	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
140639	chr2	233472471	233472830	+	0	NA	TTS (NM_152879)	TTS (NM_152879)	17248	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
95878	chr17	38871301	38873030	+	0	NA	intron (NM_006148, intron 1 of 6)	MIR3|SINE|MIR	2107	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
96965	chr17	42243501	42244250	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	32516	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
178457	chr4	148061901	148062100	+	0	NA	intron (NM_024605, intron 20 of 22)	intron (NM_024605, intron 20 of 22)	279405	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
83253	chr16	23907121	23907380	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	71267	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
137108	chr2	190984671	190985200	+	0	NA	intron (NM_139266, intron 15 of 22)	intron (NM_139266, intron 15 of 22)	29236	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
87798	chr16	75469851	75469950	+	0	NA	Intergenic	AluYc3|SINE|Alu	-5163	NM_001304998	124491		NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
128073	chr2	47867221	47867730	+	0	NA	intron (NM_001190274, intron 1 of 22)	MLT1I|LTR|ERVL-MaLR	21244	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
220124	chr8	94720901	94721100	+	0	NA	intron (NM_181787, intron 1 of 18)	AluSp|SINE|Alu	1100	NM_181787	286148		NM_181787	ENSG00000156162	DPY19L4	-	dpy-19 like 4	protein-coding
71276	chr14	105250171	105250730	+	0	NA	exon (NM_033271, exon 5 of 5)	exon (NM_033271, exon 5 of 5)	-1046	NM_001242789	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
74241	chr15	56885471	56885900	+	0	NA	TTS (NR_015419)	TTS (NR_015419)	-32405	NM_001322151	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
198776	chr6	108846751	108847250	+	0	NA	Intergenic	Intergenic	-1416	NM_001286609	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
146393	chr20	49292721	49293180	+	0	NA	Intergenic	AluSc|SINE|Alu	12267	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
199853	chr6	127777101	127777380	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L1ME1|LINE|L1	77948	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
38043	chr11	35158451	35158700	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	-4375	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
96990	chr17	42279051	42279780	+	0	NA	Intergenic	Intergenic	-3024	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
157387	chr22	44731351	44731730	+	0	NA	intron (NM_181334, intron 4 of 14)	MIR|SINE|MIR	-21018	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
12344	chr1	101127851	101129380	+	0	NA	Intergenic	Intergenic	102769	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
91179	chr17	3847801	3848600	+	0	NA	Intergenic	Intergenic	-1954	NM_001114118	55421		NM_018553	ENSG00000074356	NCBP3	C17orf85|ELG|HSA277841	nuclear cap binding subunit 3	protein-coding
95171	chr17	35162951	35163050	+	0	NA	intron (NM_173167, intron 7 of 18)	MIRb|SINE|MIR	14736	NM_173167	146862		NM_173167	ENSG00000141161	UNC45B	CMYA4|CTRCT43|MFM11|SMUNC45|UNC-45B|UNC45	unc-45 myosin chaperone B	protein-coding
120176	chr19	42257251	42258080	+	0	NA	Intergenic	AluY|SINE|Alu	-2537	NM_001312656	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
91377	chr17	4558071	4558230	+	0	NA	exon (NM_001122890, exon 4 of 4)	exon (NM_001122890, exon 4 of 4)	2427	NM_001288703	124975		NM_153338	ENSG00000167741	GGT6	-	gamma-glutamyltransferase 6	protein-coding
220670	chr8	101155501	101156600	+	0	NA	Intergenic	Intergenic	14189	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
83773	chr16	28735271	28735630	+	0	NA	exon (NM_001099661, exon 21 of 21).2	exon (NM_001099661, exon 21 of 21).2	11198	NR_107058	102465907		NR_107058	ENSG00000278340	MIR6862-2	hsa-mir-6862-2	microRNA 6862-2	ncRNA
53838	chr12	69570601	69571100	+	0	NA	intron (NM_001278357, intron 4 of 6)	MIRb|SINE|MIR	-13873	NR_037476	100500868		NR_037476	ENSG00000283677	MIR3913-2	mir-3913-2	microRNA 3913-2	ncRNA
52358	chr12	55637221	55638000	+	0	NA	exon (NM_206899, exon 1 of 1)	exon (NM_206899, exon 1 of 1)	718	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
231188	chr9	129913921	129914180	+	0	NA	intron (NM_001363755, intron 11 of 15)	AluJb|SINE|Alu	44445	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
89493	chr16	89131901	89132100	+	0	NA	intron (NR_147928, intron 8 of 11)	intron (NR_147928, intron 8 of 11)	-4548	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
105104	chr17	82198101	82198700	+	0	NA	exon (NM_198082, exon 3 of 17)	exon (NM_198082, exon 3 of 17)	14442	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
20350	chr1	197908551	197909050	+	0	NA	Intergenic	Intergenic	-3705	NM_001014434	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
147880	chr20	62858271	62858630	+	0	NA	intron (NM_006602, intron 3 of 5)	L1ME3E|LINE|L1	3372	NM_006602	10732		NM_006602	ENSG00000101190	TCFL5	CHA|E2BP-1|Figlb|SOSF1|bHLHe82	transcription factor like 5	protein-coding
168968	chr3	152389301	152389950	+	0	NA	intron (NM_001376837, intron 2 of 9)	Tigger3b|DNA|TcMar-Tigger	-48635	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
5021	chr1	24490301	24490780	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-11804	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
63224	chr13	113874421	113874680	+	0	NA	Intergenic	Intergenic	8936	NR_047035	100874178		NR_047035	ENSG00000226921	LINC00454	-	long intergenic non-protein coding RNA 454	ncRNA
154630	chr22	36319601	36320750	+	0	NA	intron (NM_002473, intron 9 of 40)	intron (NM_002473, intron 9 of 40)	-33268	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
148314	chr20	63742101	63742400	+	0	NA	intron (NM_020062, intron 5 of 7)	intron (NM_020062, intron 5 of 7)	2474	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
16886	chr1	155852471	155852630	+	0	NA	intron (NM_001282861, intron 2 of 20)	AluY|SINE|Alu	4664	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
144631	chr20	35933171	35933730	+	0	NA	intron (NM_016436, intron 15 of 17)	AluY|SINE|Alu	21052	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
53131	chr12	57840821	57841100	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	5769	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
157881	chr22	49723701	49724270	+	0	NA	Intergenic	Intergenic	-66466	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
141384	chr2	240739601	240740700	+	0	NA	intron (NM_001379653, intron 34 of 46)	intron (NM_001379653, intron 34 of 46)	48284	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
44925	chr11	115659571	115659730	+	0	NA	Intergenic	CpG	75112	NR_135066	101928985		NR_135066		LOC101928985	-	uncharacterized LOC101928985	ncRNA
71756	chr15	21003551	21003650	+	0	NA	non-coding (NR_145444, exon 1 of 4)	non-coding (NR_145444, exon 1 of 4)	323	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
184885	chr5	112692571	112692730	+	0	NA	Intergenic	Intergenic	-9762	NR_104673	102467216		NR_104673		LOC102467216	-	uncharacterized LOC102467216	ncRNA
33166	chr10	112947271	112947630	+	0	NA	Intergenic	AluY|SINE|Alu	-2797	NM_001146274	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
238118	chrX	136650771	136651130	+	0	NA	intron (NM_000074, intron 2 of 4)	intron (NM_000074, intron 2 of 4)	2792	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
70058	chr14	100137721	100138100	+	0	NA	intron (NM_016337, intron 11 of 13)	intron (NM_016337, intron 11 of 13)	21735	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
182014	chr5	55344201	55344800	+	0	NA	intron (NM_015360, intron 8 of 26)	intron (NM_015360, intron 8 of 26)	36511	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
181061	chr5	36243821	36244080	+	0	NA	Intergenic	L2|LINE|L2	-1671	NM_153013	133686		NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
223299	chr8	143793571	143793930	+	0	NA	intron (NM_182706, intron 28 of 36).2	intron (NM_182706, intron 28 of 36).2	19292	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
11328	chr1	89483171	89483600	+	0	NA	Intergenic	Intergenic	-41444	NM_015350	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
151231	chr21	45268121	45268400	+	0	NA	intron (NM_133635, intron 7 of 8)	SVA_D|Retroposon|SVA	19635	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
187183	chr5	140649401	140649800	+	0	NA	intron (NM_006083, intron 2 of 19)	AluSz|SINE|Alu	1756	NR_037428	100500820		NR_037428	ENSG00000284325	MIR3655	-	microRNA 3655	ncRNA
103453	chr17	78289651	78290580	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-11623	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
18032	chr1	160581821	160582400	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-2594	NM_001184882	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
119860	chr19	41432351	41433050	+	0	NA	3' UTR (NM_001320839, exon 4 of 4)	3' UTR (NM_001320839, exon 4 of 4)	-3970	NM_198540	374907		NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
47081	chr12	610101	610730	+	0	NA	promoter-TSS (NM_001294345)	promoter-TSS (NM_001294345)	1	NM_001294345	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
192271	chr6	20403001	20404300	+	0	NA	promoter-TSS (NM_001243076)	promoter-TSS (NM_001243076)	-29	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
173722	chr4	15945001	15945350	+	0	NA	Intergenic	Intergenic	-6435	NM_005130	9982		NM_005130	ENSG00000137440	FGFBP1	FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17	fibroblast growth factor binding protein 1	protein-coding
179012	chr4	164081151	164081250	+	0	NA	intron (NM_001166373, intron 2 of 7)	AluY|SINE|Alu	116511	NM_012403	23520		NM_012403		ANP32CP	ANP32C|PP32R1	acidic nuclear phosphoprotein 32 family member C, pseudogene	pseudo
195554	chr6	37482971	37483200	+	0	NA	3' UTR (NM_138493, exon 4 of 4)	3' UTR (NM_138493, exon 4 of 4)	16808	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
141230	chr2	239548521	239548890	+	0	NA	Intergenic	Intergenic	146957	NR_135577	101928111		NR_135575	ENSG00000222020	HDAC4-AS1	-	HDAC4 antisense RNA 1	ncRNA
126555	chr2	28618271	28618430	+	0	NA	non-coding (NR_138141, exon 24 of 36)	non-coding (NR_138141, exon 24 of 36)	51993	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
46471	chr11	128299171	128299930	+	0	NA	Intergenic	Intergenic	90784	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
74958	chr15	63818001	63818850	+	0	NA	intron (NM_003922, intron 1 of 77)	intron (NM_003922, intron 1 of 77)	15523	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
29315	chr10	69344351	69345800	+	0	NA	intron (NM_033498, intron 5 of 20)	intron (NM_033498, intron 5 of 20)	26228	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
40025	chr11	62672101	62673930	+	0	NA	3' UTR (NM_001085372, exon 2 of 2)	3' UTR (NM_001085372, exon 2 of 2)	-1232	NR_160410								
91668	chr17	5534301	5534500	+	0	NA	intron (NM_033006, intron 7 of 15)	intron (NM_033006, intron 7 of 15)	-33394	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
133546	chr2	120344301	120345350	+	0	NA	Intergenic	CpG	-1311	NM_002193	3625		NM_002193	ENSG00000163083	INHBB	-	inhibin subunit beta B	protein-coding
128346	chr2	54867501	54867730	+	0	NA	intron (NM_001039753, intron 13 of 40)	AluJb|SINE|Alu	142603	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
51261	chr12	51076051	51076750	+	0	NA	intron (NR_045072, intron 2 of 4)	intron (NR_045072, intron 2 of 4)	7196	NR_045072	81566		NM_030809	ENSG00000110925	CSRNP2	C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12	cysteine and serine rich nuclear protein 2	protein-coding
55269	chr12	102824551	102824650	+	0	NA	promoter-TSS (NR_033855)	promoter-TSS (NR_033855)	-201	NR_033855	283432		NR_033855	ENSG00000258169	LINC00485	-	long intergenic non-protein coding RNA 485	ncRNA
158207	chr22	50257121	50258030	+	0	NA	intron (NM_001303252, intron 3 of 10)	intron (NM_001303252, intron 3 of 10)	4108	NM_002969	6300		NM_002969	ENSG00000188130	MAPK12	ERK-6|ERK3|ERK6|MAPK 12|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
198749	chr6	108568021	108568830	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	7508	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
201411	chr6	146267651	146267750	+	0	NA	intron (NM_001278065, intron 3 of 9)	(GGCTG)n|Simple_repeat|Simple_repeat	238502	NM_001278067	2911		NM_000838	ENSG00000152822	GRM1	GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13	glutamate metabotropic receptor 1	protein-coding
124141	chr19	55695851	55695950	+	0	NA	TTS (NM_001130071)	TTS (NM_001130071)	19275	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
63712	chr14	21197621	21197880	+	0	NA	Intergenic	LTR8|LTR|ERV1	7753	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
189436	chr5	172932101	172932830	+	0	NA	exon (NM_001031711, exon 8 of 10)	exon (NM_001031711, exon 8 of 10)	17382	NR_162113	113218510		NR_162113		MIR10523	-	microRNA 10523	ncRNA
31236	chr10	91856671	91856850	+	0	NA	intron (NM_025235, intron 23 of 26)	intron (NM_025235, intron 23 of 26)	52726	NM_152429	143282		NM_152429	ENSG00000174721	FGFBP3	C10orf13|FGF-BP3	fibroblast growth factor binding protein 3	protein-coding
214793	chr7	151166101	151166380	+	0	NA	intron (NM_001098834, intron 1 of 1)	intron (NM_001098834, intron 1 of 1)	1308	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
185642	chr5	131534971	131535630	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	99929	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
105565	chr18	73151	73530	+	0	NA	Intergenic	CpG	-23783	NM_001358689	260334		NM_001358689	ENSG00000173213	TUBB8B	TUBB8P12	tubulin beta 8B	protein-coding
82815	chr16	21484571	21485130	+	0	NA	intron (NR_027155, intron 1 of 28)	intron (NR_027155, intron 1 of 28)	-16676	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
168640	chr3	149982071	149982250	+	0	NA	3' UTR (NM_001079809, exon 1 of 1)	3' UTR (NM_001079809, exon 1 of 1)	1206	NM_001079809	653659		NM_001079809	ENSG00000224831	TMEM183BP	C1ORF37DUP|C1orf37-DUP|TMEM183B	transmembrane protein 183B, pseudogene	pseudo
117406	chr19	19621301	19622100	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3013	NR_038198	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
93558	chr17	19075471	19075850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11524	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
208481	chr7	67176701	67176950	+	0	NA	intron (NM_018264, intron 13 of 15)	MER20|DNA|hAT-Charlie	-62428	NR_039793	100616310		NR_039793	ENSG00000266525	MIR4650-1	-	microRNA 4650-1	ncRNA
149538	chr21	33025571	33026450	+	0	NA	promoter-TSS (NM_005806)	promoter-TSS (NM_005806)	75	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
222482	chr8	140338601	140339050	+	0	NA	intron (NM_001374684, intron 8 of 21)	CpG	118919	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
144709	chr20	36493621	36494000	+	0	NA	intron (NM_183006, intron 1 of 6)	MIRb|SINE|MIR	32015	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
191647	chr6	13357121	13357580	+	0	NA	TTS (NM_018988)	TTS (NM_018988)	-28767	NM_001143964	51256		NM_016495	ENSG00000145979	TBC1D7	MGCPH|PIG51|TBC7	TBC1 domain family member 7	protein-coding
214694	chr7	150981071	150981230	+	0	NA	Intergenic	Intergenic	-2829	NM_000238	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
182387	chr5	61239351	61239450	+	0	NA	Intergenic	L1PA4|LINE|L1	25529	NR_146624	105378992		NR_146624	ENSG00000249279	LINC02057	-	long intergenic non-protein coding RNA 2057	ncRNA
86125	chr16	57677821	57678280	+	0	NA	intron (NM_170776, intron 3 of 11)	intron (NM_170776, intron 3 of 11)	9744	NM_001308360	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
116161	chr19	17394951	17395900	+	0	NA	Intergenic	L2a|LINE|L2	10205	NM_004335	684		NM_004335	ENSG00000130303	BST2	CD317|HM1.24|TETHERIN	bone marrow stromal cell antigen 2	protein-coding
135864	chr2	170933771	170933930	+	0	NA	intron (NM_015530, intron 1 of 9)	intron (NM_015530, intron 1 of 9)	4597	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
136336	chr2	175206701	175206900	+	0	NA	Intergenic	MIR|SINE|MIR	-25090	NM_001002258	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
177844	chr4	127895251	127895880	+	0	NA	intron (NM_001190801, intron 14 of 15)	AluY|SINE|Alu	14321	NM_001190801	10733		NM_014264	ENSG00000142731	PLK4	MCCRP2|SAK|STK18	polo like kinase 4	protein-coding
141017	chr2	238165471	238165780	+	0	NA	exon (NM_001291832, exon 7 of 8)	exon (NM_001291832, exon 7 of 8)	6655	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
221246	chr8	122572301	122572530	+	0	NA	Intergenic	Intergenic	-3771	NR_131202	105375734		NR_131202		SMILR	-	smooth muscle induced lncRNA, enhancer of proliferation	ncRNA
964	chr1	1779911	1781300	+	0	NA	promoter-TSS (NM_001198994)	promoter-TSS (NM_001198994)	-574	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
168996	chr3	152425401	152426200	+	0	NA	intron (NM_207295, intron 3 of 8)	L1PA7|LINE|L1	-84810	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
8339	chr1	40184501	40184700	+	0	NA	intron (NM_012421, intron 1 of 7)	L2|LINE|L2	23213	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
232872	chr9	136822851	136823150	+	0	NA	intron (NM_024718, intron 1 of 14)	AluYk4|SINE|Alu	-7957	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
51592	chr12	52681401	52682030	+	0	NA	Intergenic	L2c|LINE|L2	-1308	NM_006121	3848		NM_006121	ENSG00000167768	KRT1	AEI2|CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK	keratin 1	protein-coding
25339	chr10	6267251	6268080	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-58879	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
21331	chr1	204542021	204542280	+	0	NA	intron (NM_001204171, intron 7 of 9)	intron (NM_001204171, intron 7 of 9)	25744	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
52196	chr12	54357901	54358510	+	0	NA	intron (NR_120487, intron 1 of 3)	intron (NR_120487, intron 1 of 3)	4514	NR_120486	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
113045	chr19	8006901	8007300	+	0	NA	Intergenic	AluJb|SINE|Alu	-1459	NM_001419	1994		NM_001419	ENSG00000066044	ELAVL1	ELAV1|HUR|Hua|MelG	ELAV like RNA binding protein 1	protein-coding
142552	chr20	5127501	5128780	+	0	NA	intron (NM_003818, intron 1 of 12)	MER102c|DNA|hAT-Charlie	1132	NM_003818	8760		NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
148087	chr20	63298351	63298450	+	0	NA	intron (NM_020882, intron 3 of 35)	AluJb|SINE|Alu	5214	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
224991	chr9	33109271	33109950	+	0	NA	TTS (NR_162131)	TTS (NR_162131)	918	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
171340	chr3	196044921	196045580	+	0	NA	Intergenic	Intergenic	36840	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
163518	chr3	51441721	51441980	+	0	NA	exon (NM_001349170, exon 7 of 24)	exon (NM_001349170, exon 7 of 24)	50565	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
166762	chr3	122273721	122273980	+	0	NA	intron (NM_001178065, intron 4 of 6)	intron (NM_001178065, intron 4 of 6)	-51398	NM_005213	1475		NM_005213	ENSG00000121552	CSTA	AREI|PSS4|STF1|STFA	cystatin A	protein-coding
202464	chr6	158209621	158209880	+	0	NA	Intergenic	LTR12C|LTR|ERV1	41400	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
11964	chr1	94020621	94021300	+	0	NA	intron (NM_000350, intron 35 of 49)	intron (NM_000350, intron 35 of 49)	100188	NM_000350	24		NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
189897	chr5	177343951	177344750	+	0	NA	intron (NM_006816, intron 2 of 7)	AluSc5|SINE|Alu	7318	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
171875	chr4	772351	772450	+	0	NA	Intergenic	Intergenic	9448	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
201597	chr6	149353871	149354380	+	0	NA	intron (NM_001369506, intron 2 of 7)	intron (NM_001369506, intron 2 of 7)	35825	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
34789	chr11	222851	222950	+	0	NA	intron (NR_163391, intron 3 of 4)	intron (NR_163391, intron 3 of 4)	13442	NM_001370314	23410		NM_012239	ENSG00000142082	SIRT3	SIR2L3	sirtuin 3	protein-coding
77664	chr15	85570421	85570680	+	0	NA	intron (NM_007200, intron 5 of 36)	intron (NM_007200, intron 5 of 36)	-49400	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
44717	chr11	111734951	111735830	+	0	NA	intron (NM_181700, intron 13 of 13)	intron (NM_181700, intron 13 of 13)	30999	NM_001177562	5519		NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
98410	chr17	46593601	46594100	+	0	NA	intron (NR_040116, intron 1 of 19).2	L2c|LINE|L2	3116	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
131599	chr2	96872021	96872630	+	0	NA	Intergenic	AluY|SINE|Alu	-2245	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
196582	chr6	44174751	44175250	+	0	NA	intron (NM_007058, intron 7 of 22)	L1MD2|LINE|L1	16180	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105472	chr17	83064851	83065150	+	0	NA	Intergenic	Intergenic	-13190	NM_001009905	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
32652	chr10	103765951	103766630	+	0	NA	intron (NM_014631, intron 3 of 13)	intron (NM_014631, intron 3 of 13)	19511	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
100538	chr17	62507051	62507550	+	0	NA	intron (NM_001375269, intron 2 of 20)	ERVL-B4-int|LTR|ERVL	26187	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
193676	chr6	31042721	31043000	+	0	NA	Intergenic	Intergenic	-10590	NR_145427	285834		NM_001348249	ENSG00000228789	HCG22	PBMUCL2	HLA complex group 22 (non-protein coding)	ncRNA
15628	chr1	150631421	150631930	+	0	NA	Intergenic	AluSx|SINE|Alu	-2053	NM_207168	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
150757	chr21	43783771	43783930	+	0	NA	Intergenic	Intergenic	-5727	NM_003683	8568		NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
97048	chr17	42337271	42337930	+	0	NA	intron (NM_001369519, intron 7 of 23)	intron (NM_001369519, intron 7 of 23)	49544	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
226219	chr9	65769071	65769480	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-21846	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
108040	chr18	59141821	59142080	+	0	NA	intron (NM_033280, intron 1 of 5)	intron (NM_033280, intron 1 of 5)	2066	NM_033280	90701		NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
67714	chr14	73458001	73459400	+	0	NA	promoter-TSS (NM_001005745)	promoter-TSS (NM_001005745)	-120	NM_001005745	8650		NM_003744	ENSG00000133961	NUMB	C14orf41|S171|c14_5527	NUMB endocytic adaptor protein	protein-coding
63516	chr13	114283771	114284130	+	0	NA	intron (NR_148495, intron 2 of 3)	intron (NR_148495, intron 2 of 3)	1555	NM_001353648	65110		NM_023011	ENSG00000169062	UPF3A	HUPF3A|RENT3A|UPF3	UPF3A regulator of nonsense mediated mRNA decay	protein-coding
223277	chr8	143729021	143729280	+	0	NA	intron (NM_198488, intron 3 of 4)	CpG	4003	NR_039810	100616318		NR_039810	ENSG00000265660	MIR4664	-	microRNA 4664	ncRNA
54998	chr12	96359351	96359900	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	40814	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
218541	chr8	53949601	53949800	+	0	NA	intron (NM_170587, intron 4 of 5)	AluSx1|SINE|Alu	68828	NR_104578	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
70235	chr14	100873101	100873430	+	0	NA	Intergenic	Intergenic	-1228	NR_029889	442905		NR_029889	ENSG00000199151	MIR337	MIRN337|hsa-mir-337|mir-337	microRNA 337	ncRNA
139914	chr2	230738151	230738850	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	24952	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
67675	chr14	73134951	73135050	+	0	NA	Intergenic	Intergenic	-1507	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
64453	chr14	24235671	24236030	+	0	NA	intron (NR_104265, intron 4 of 9)	intron (NR_104265, intron 4 of 9)	2921	NM_001351026	51292		NM_016576	ENSG00000100938	GMPR2	GMPR 2	guanosine monophosphate reductase 2	protein-coding
121406	chr19	46961951	46962480	+	0	NA	intron (NM_004491, intron 3 of 6)	MIR3|SINE|MIR	-57622	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
7926	chr1	37492221	37492680	+	0	NA	non-coding (NR_073090, exon 9 of 9)	non-coding (NR_073090, exon 9 of 9)	8544	NR_049844	100847010		NR_049844	ENSG00000263675	MIR5581	-	microRNA 5581	ncRNA
175107	chr4	54323001	54323200	+	0	NA	Intergenic	Intergenic	-9792	NR_147160	105377656		NR_147160		LINC02283	-	long intergenic non-protein coding RNA 2283	ncRNA
209212	chr7	75441971	75443330	+	0	NA	intron (NM_001099415, intron 3 of 14)	CpG	32328	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
96492	chr17	40290621	40291530	+	0	NA	exon (NM_001254, exon 3 of 12)	exon (NM_001254, exon 3 of 12)	3196	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
515	chr1	1210551	1210650	+	0	NA	TTS (NM_003327)	TTS (NM_003327)	3553	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
1230	chr1	2278301	2280450	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	51056	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
95368	chr17	35871351	35872030	+	0	NA	3' UTR (NM_001278736, exon 4 of 4)	3' UTR (NM_001278736, exon 4 of 4)	-2799	NR_135630	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
107525	chr18	48408171	48408330	+	0	NA	intron (NM_001371287, intron 1 of 5)	CpG	1133	NM_001371285	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
209983	chr7	92831971	92832130	+	0	NA	intron (NM_001145306, intron 2 of 7)	intron (NM_001145306, intron 2 of 7)	1909	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
13411	chr1	113976701	113977280	+	0	NA	3' UTR (NM_001369807, exon 16 of 16)	3' UTR (NM_001369807, exon 16 of 16)	-2401	NM_001286353	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
194484	chr6	33247371	33247530	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2086	NR_044997	414765		NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25	ncRNA
126083	chr2	25815471	25815630	+	0	NA	intron (NM_018263, intron 2 of 11)	intron (NM_018263, intron 2 of 11)	15351	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
50098	chr12	44851621	44851880	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	23911	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
95677	chr17	38348951	38349830	+	0	NA	Intergenic	Intergenic	-2454	NM_014598	30837		NM_014598	ENSG00000274211	SOCS7	NAP4|NCKAP4	suppressor of cytokine signaling 7	protein-coding
51796	chr12	53379101	53381200	+	0	NA	promoter-TSS (NM_003109)	promoter-TSS (NM_003109)	-26	NM_001251825	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
215934	chr8	8311951	8312050	+	0	NA	Intergenic	L1MC4a|LINE|L1	74244	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
137824	chr2	200455121	200455580	+	0	NA	intron (NM_001282743, intron 7 of 11)	L2b|LINE|L2	54718	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
220808	chr8	102774651	102774750	+	0	NA	Intergenic	LTR33|LTR|ERVL	-32122	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
4504	chr1	21669201	21670080	+	0	NA	promoter-TSS (NM_001330383)	promoter-TSS (NM_001330383)	-283	NM_001350524	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
142756	chr20	10490501	10490900	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	55395	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
22090	chr1	211515221	211515950	+	0	NA	Intergenic	CpG	-23423	NM_183059	343035		NM_183059	ENSG00000198570	RD3	C1orf36|LCA12	RD3 regulator of GUCY2D	protein-coding
217246	chr8	27286551	27287150	+	0	NA	3' UTR (NM_001304495, exon 4 of 4)	3' UTR (NM_001304495, exon 4 of 4)	24422	NM_001362813	23087		NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
14600	chr1	145272721	145273180	+	0	NA	Intergenic	Intergenic	-8166	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
26496	chr10	17872701	17872900	+	0	NA	intron (NM_002438, intron 15 of 29)	A-rich|Low_complexity|Low_complexity	27693	NR_030167	574445		NR_030167	ENSG00000207938	MIR511	MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511	microRNA 511	ncRNA
35598	chr11	1753521	1754450	+	0	NA	intron (NM_001909, intron 7 of 8)	intron (NM_001909, intron 7 of 8)	-3390	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
4736	chr1	23392221	23392530	+	0	NA	intron (NM_003196, intron 8 of 10).2	(AC)n|Simple_repeat|Simple_repeat	-22539	NM_001077195	80818		NM_030634	ENSG00000125945	ZNF436	ZNF|Zfp46	zinc finger protein 436	protein-coding
23758	chr1	232805201	232806300	+	0	NA	exon (NM_019090, exon 1 of 1)	exon (NM_019090, exon 1 of 1)	334	NM_019090	54627		NM_019090	ENSG00000212916	MAP10	KIAA1383|MTR120	microtubule associated protein 10	protein-coding
27293	chr10	30417471	30417830	+	0	NA	Intergenic	Intergenic	-16371	NM_001244134	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
74812	chr15	63472951	63473620	+	0	NA	Intergenic	Intergenic	-31226	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
73662	chr15	44720701	44722200	+	0	NA	Intergenic	AluSg|SINE|Alu	3606	NR_162102	113218500		NR_162102		MIR10393	-	microRNA 10393	ncRNA
166566	chr3	115782821	115783080	+	0	NA	Intergenic	L2c|LINE|L2	122176	NR_145779	109623450		NR_145779		SNORD155	-	small nucleolar RNA, C/D box 155	snoRNA
123074	chr19	51379651	51379950	+	0	NA	TTS (NM_030657)	TTS (NM_030657)	-7146	NM_005601	4818		NM_005601	ENSG00000105374	NKG7	GIG1|GMP-17|p15-TIA-1	natural killer cell granule protein 7	protein-coding
225631	chr9	36327021	36327480	+	0	NA	Intergenic	Intergenic	-50272	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
196786	chr6	45674721	45675130	+	0	NA	Intergenic	L1PA2|LINE|L1	252650	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
131320	chr2	96127801	96128730	+	0	NA	intron (NM_001002036, intron 8 of 8)	L1M5|LINE|L1	10171	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
72398	chr15	31389301	31390230	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	62930	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
22065	chr1	211331651	211331750	+	0	NA	intron (NM_001319207, intron 1 of 10)	AluSq|SINE|Alu	4867	NM_001033910	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
67222	chr14	68948801	68949200	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	30302	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
89569	chr16	89260251	89260580	+	0	NA	Intergenic	AluJb|SINE|Alu	-35713	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
93445	chr17	18650171	18650350	+	0	NA	Intergenic	Intergenic	-5833	NM_001039397	254272		NM_001039397	ENSG00000189375	TBC1D28	-	TBC1 domain family member 28	protein-coding
215078	chr7	154913701	154914950	+	0	NA	Intergenic	CpG	-14192	NR_024476	100132707		NR_024476		PAXIP1-AS2	PAXIP1OS	PAXIP1 antisense RNA 2	ncRNA
153161	chr22	23786251	23787750	+	0	NA	promoter-TSS (NM_001317946)	promoter-TSS (NM_001317946)	34	NM_001007468	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
71044	chr14	104788701	104789180	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	4661	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
155990	chr22	39919471	39919630	+	0	NA	intron (NM_004810, intron 1 of 7)	(TCTCCA)n|Simple_repeat|Simple_repeat	-7054	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
115910	chr19	16604721	16604980	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	23354	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
152458	chr22	20698651	20698750	+	0	NA	Intergenic	Intergenic	-2414	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
95924	chr17	38919521	38919780	+	0	NA	non-coding (NR_073384, exon 8 of 8)	non-coding (NR_073384, exon 8 of 8)	4671	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
156045	chr22	39976101	39976300	+	0	NA	Intergenic	Intergenic	-18754	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
102892	chr17	76527551	76529350	+	0	NA	3' UTR (NM_134268, exon 4 of 4)	3' UTR (NM_134268, exon 4 of 4)	864	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
126389	chr2	27571071	27571230	+	0	NA	Intergenic	Intergenic	-5372	NM_032266	84226		NM_032266	ENSG00000221843	SPATA31H1	C2orf16	SPATA31 subfamily H member 1	protein-coding
128891	chr2	64133921	64134180	+	0	NA	intron (NM_020651, intron 1 of 6)	intron (NM_020651, intron 1 of 6)	10370	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
21639	chr1	206614221	206614750	+	0	NA	Intergenic	Intergenic	-1934	NM_001201478	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
25631	chr10	8089851	8090150	+	0	NA	Intergenic	Intergenic	35312	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
166598	chr3	119235401	119235600	+	0	NA	intron (NM_212543, intron 2 of 8)	intron (NM_212543, intron 2 of 8)	5378	NM_003778	8702		NM_003778	ENSG00000121578	B4GALT4	B4Gal-T4|beta4Gal-T4	beta-1,4-galactosyltransferase 4	protein-coding
98657	chr17	47830811	47832800	+	0	NA	promoter-TSS (NM_148887)	promoter-TSS (NM_148887)	135	NM_033413	90506		NM_033413	ENSG00000141294	LRRC46	-	leucine rich repeat containing 46	protein-coding
71552	chr14	106286701	106286950	+	0	NA	promoter-TSS (NR_033375)	promoter-TSS (NR_033375)	-849	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
189879	chr5	177314371	177315280	+	0	NA	Intergenic	Intergenic	-2927	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
72156	chr15	29108021	29108280	+	0	NA	intron (NM_001353793, intron 10 of 12).2	intron (NM_001353793, intron 10 of 12).2	37492	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
38084	chr11	35200671	35201600	+	0	NA	exon (NM_000610, exon 8 of 18)	exon (NM_000610, exon 8 of 18)	38185	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
109382	chr19	653121	653630	+	0	NA	intron (NM_194460, intron 1 of 8)	intron (NM_194460, intron 1 of 8)	9839	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
59873	chr13	30654221	30655080	+	0	NA	intron (NM_005800, intron 8 of 8)	intron (NM_005800, intron 8 of 8)	20435	NM_001321534	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
89738	chr16	89434851	89435300	+	0	NA	intron (NR_110932, intron 1 of 2)	LTR12|LTR|ERV1	4157	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
145991	chr20	46373921	46374380	+	0	NA	intron (NM_182764, intron 14 of 20)	AluJb|SINE|Alu	-9692	NM_001281458	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
92259	chr17	8002121	8003650	+	0	NA	intron (NM_000180, intron 1 of 19)	CpG	270	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
30755	chr10	84214401	84214880	+	0	NA	3' UTR (NM_033100, exon 17 of 17)	3' UTR (NM_033100, exon 17 of 17)	10904	NM_001017924	340745		NM_001017924	ENSG00000204033	LRIT2	LRRC22	leucine rich repeat, Ig-like and transmembrane domains 2	protein-coding
123938	chr19	55377351	55377650	+	0	NA	intron (NM_139172, intron 2 of 4)	intron (NM_139172, intron 2 of 4)	674	NM_139172	147744		NM_139172	ENSG00000160472	TMEM190	MDAC1	transmembrane protein 190	protein-coding
143160	chr20	24045571	24045930	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-56971	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
235492	chrX	46978601	46978880	+	0	NA	intron (NM_014735, intron 1 of 10)	intron (NM_014735, intron 1 of 10)	66319	NM_014735	9767		NM_014735	ENSG00000102221	JADE3	JADE-3|PHF16	jade family PHD finger 3	protein-coding
178400	chr4	147639901	147640350	+	0	NA	intron (NM_001350141, intron 9 of 10)	AluJb|SINE|Alu	22728	NM_018241	55751		NM_018241	ENSG00000164168	TMEM184C	SLC51C3|TMEM34	transmembrane protein 184C	protein-coding
201579	chr6	149334221	149334980	+	0	NA	intron (NM_015093, intron 1 of 8)	AluJr|SINE|Alu	16300	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
12383	chr1	101265851	101265950	+	0	NA	Intergenic	L2|LINE|L2	28881	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
131577	chr2	96837821	96838100	+	0	NA	TTS (NM_144994)	TTS (NM_144994)	6061	NM_144994	200539		NM_144994	ENSG00000163126	ANKRD23	DARP|MARP3	ankyrin repeat domain 23	protein-coding
151423	chr21	46116751	46117450	+	0	NA	intron (NM_001849, intron 10 of 27)	intron (NM_001849, intron 10 of 27)	18981	NM_058175	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
146226	chr20	48801271	48801830	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	26449	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
104721	chr17	81601321	81602450	+	0	NA	intron (NM_001369698, intron 8 of 16)	intron (NM_001369698, intron 8 of 16)	-24452	NR_130139	55666		NM_017921	ENSG00000182446	NPLOC4	NPL4	NPL4 homolog, ubiquitin recognition factor	protein-coding
238220	chrX	139931851	139932400	+	0	NA	5' UTR (NM_001353812, exon 1 of 30)	5' UTR (NM_001353812, exon 1 of 30)	928	NM_001353811	286410		NM_173694	ENSG00000101974	ATP11C	ATPIG|ATPIQ|HACXL	ATPase phospholipid transporting 11C	protein-coding
5694	chr1	26367401	26367750	+	0	NA	intron (NM_173574, intron 3 of 5)	intron (NM_173574, intron 3 of 5)	5175	NM_001114759	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
39710	chr11	61754551	61755680	+	0	NA	promoter-TSS (NM_013279)	promoter-TSS (NM_013279)	-263	NM_013279	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
60580	chr13	41916271	41916900	+	0	NA	intron (NM_015058, intron 2 of 44)	intron (NM_015058, intron 2 of 44)	44500	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
212126	chr7	116233171	116234100	+	0	NA	intron (NM_152829, intron 1 of 6)	MIRb|SINE|MIR	10682	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
37853	chr11	33734851	33735900	+	0	NA	intron (NM_203329, intron 1 of 4)	intron (NM_203329, intron 1 of 4)	1048	NM_000611	966		NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
48839	chr12	12364321	12364930	+	0	NA	intron (NM_058169, intron 2 of 3)	intron (NM_058169, intron 2 of 3)	7547	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
112620	chr19	6763571	6764130	+	0	NA	intron (NM_005490, intron 1 of 9)	intron (NM_005490, intron 1 of 9)	3585	NM_005490	10045		NM_005490	ENSG00000125731	SH2D3A	NSP1	SH2 domain containing 3A	protein-coding
129364	chr2	68781101	68781850	+	0	NA	intron (NM_001364820, intron 2 of 9)	intron (NM_001364820, intron 2 of 9)	6565	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
173526	chr4	9825171	9825330	+	0	NA	TTS (NM_001001290)	TTS (NM_001001290)	43616	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
76640	chr15	75621421	75621680	+	0	NA	intron (NM_001042588, intron 1 of 8)	AluJr|SINE|Alu	4175	NM_005701	10073		NM_005701	ENSG00000169371	SNUPN	KPNBL|RNUT1|Snurportin1	snurportin 1	protein-coding
180557	chr5	14670771	14670930	+	0	NA	intron (NM_138348, intron 1 of 6)	intron (NM_138348, intron 1 of 6)	6132	NM_138348	90268		NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM|IMD107	OTU deubiquitinase with linear linkage specificity	protein-coding
225709	chr9	36633001	36633200	+	0	NA	intron (NM_014791, intron 9 of 17)	intron (NM_014791, intron 9 of 17)	60205	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
155646	chr22	38983401	38983730	+	0	NA	intron (NM_004900, intron 1 of 7)	MIR|SINE|MIR	1218	NM_001270411	9582		NM_004900	ENSG00000179750	APOBEC3B	A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2	apolipoprotein B mRNA editing enzyme catalytic subunit 3B	protein-coding
159432	chr3	13649551	13649650	+	0	NA	Intergenic	AluJb|SINE|Alu	-1121	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
140382	chr2	233063001	233063150	+	0	NA	intron (NM_001017915, intron 1 of 26).2	Charlie18a|DNA|hAT-Charlie	2733	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
107847	chr18	54357351	54358700	+	0	NA	promoter-TSS (NM_139171)	promoter-TSS (NM_139171)	108	NR_110234	162681		NM_173529	ENSG00000166845	C18orf54	LAS2	chromosome 18 open reading frame 54	protein-coding
237849	chrX	130110101	130111650	+	0	NA	promoter-TSS (NM_001127197)	promoter-TSS (NM_001127197)	16	NM_001127197	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
183863	chr5	87231051	87231500	+	0	NA	intron (NR_130914, intron 2 of 2)	AluJb|SINE|Alu	7926	NR_130914	55338		NM_018382		LINC01949	-	long intergenic non-protein coding RNA 1949	ncRNA
44209	chr11	96303351	96303850	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-37838	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
40870	chr11	65100521	65100980	+	0	NA	intron (NR_073519, intron 2 of 9)	AluSz|SINE|Alu	4536	NR_073519	738		NM_013265	ENSG00000149823	VPS51	ANG2|ANG3|C11orf2|C11orf3|FFR|PCH13	VPS51 subunit of GARP complex	protein-coding
133742	chr2	127456121	127456780	+	0	NA	Intergenic	Intergenic	-32832	NR_039944	100616187		NR_039944	ENSG00000264075	MIR4783	-	microRNA 4783	ncRNA
50328	chr12	47021301	47021500	+	0	NA	Intergenic	Intergenic	-58203	NM_001281429	91523		NM_138371	ENSG00000179715	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
112174	chr19	5658551	5659300	+	0	NA	intron (NM_001320571, intron 12 of 18)	AluSg|SINE|Alu	21313	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
218325	chr8	42789471	42789630	+	0	NA	Intergenic	AluSc8|SINE|Alu	-20764	NM_001199279	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
215162	chr7	155643671	155645330	+	0	NA	promoter-TSS (NR_126344)	promoter-TSS (NR_126344)	-94	NR_126344	100506302		NR_126344	ENSG00000216895	RBM33-DT	-	RBM33 divergent transcript	ncRNA
22320	chr1	213983521	213983780	+	0	NA	intron (NR_037850, intron 1 of 5)	intron (NR_037850, intron 1 of 5)	2503	NR_037850	100505832		NR_037850	ENSG00000230461	PROX1-AS1	-	PROX1 antisense RNA 1	ncRNA
221122	chr8	118109551	118109650	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	2226	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
26285	chr10	14904121	14904900	+	0	NA	TTS (NR_034181)	TTS (NR_034181)	25610	NM_024670	79723		NM_024670	ENSG00000152455	SUV39H2	KMT1B	SUV39H2 histone lysine methyltransferase	protein-coding
206471	chr7	33032871	33033030	+	0	NA	intron (NM_001166118, intron 2 of 10)	AluJo|SINE|Alu	7956	NM_001356996	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
107341	chr18	45807151	45807450	+	0	NA	Intergenic	L1PBa1|LINE|L1	-18375	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
100729	chr17	63897651	63897750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1126	NM_001317	1442		NM_001317	ENSG00000136488	CSH1	CS-1|CSA|CSMT|GHB3|PL|hCS-1|hCS-A	chorionic somatomammotropin hormone 1	protein-coding
230727	chr9	128820171	128820550	+	0	NA	3' UTR (NM_016390, exon 12 of 12)	3' UTR (NM_016390, exon 12 of 12)	1860	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
217279	chr8	27351821	27352680	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	26686	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
169039	chr3	153038351	153038650	+	0	NA	Intergenic	L1MD2|LINE|L1	-123726	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
229133	chr9	114473551	114473650	+	0	NA	intron (NM_015404, intron 2 of 11)	MIRc|SINE|MIR	29615	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
98912	chr17	48600901	48601180	+	0	NA	intron (NR_033205, intron 2 of 2)	intron (NR_033205, intron 2 of 2)	3946	NM_001369397	3216		NM_018952	ENSG00000108511	HOXB6	HOX2|HOX2B|HU-2|Hox-2.2	homeobox B6	protein-coding
31125	chr10	89410671	89411030	+	0	NA	Intergenic	HERV9N-int|LTR|ERV1	-3718	NM_012420	24138		NM_012420	ENSG00000152778	IFIT5	ISG58|P58|RI58	interferon induced protein with tetratricopeptide repeats 5	protein-coding
133411	chr2	118852451	118852850	+	0	NA	Intergenic	Intergenic	-5002	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
94005	chr17	24421351	24421550	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1898339	NM_001190452	100462977		NM_001190452		MTRNR2L1	HN1	MT-RNR2 like 1 (pseudogene)	pseudo
72028	chr15	28123421	28123700	+	0	NA	intron (NM_004667, intron 85 of 92)	intron (NM_004667, intron 85 of 92)	-24245	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
17517	chr1	156764921	156765180	+	0	NA	Intergenic	Intergenic	-2485	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
198465	chr6	106173401	106173800	+	0	NA	Intergenic	L1ME4b|LINE|L1	74659	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
191668	chr6	13445001	13445400	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	26863	NR_038459	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
220977	chr8	115421571	115422130	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	246163	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
163740	chr3	52349871	52350230	+	0	NA	exon (NM_015512, exon 15 of 78)	exon (NM_015512, exon 15 of 78)	33731	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
203599	chr7	934851	935450	+	0	NA	intron (NM_006869, intron 2 of 10)	intron (NM_006869, intron 2 of 10)	-7934	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
2462	chr1	9648151	9648650	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-3331	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
128397	chr2	55132321	55132700	+	0	NA	intron (NM_001321904, intron 1 of 9)	AluSx|SINE|Alu	5321	NM_001321904	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133597	chr2	121737971	121738140	+	0	NA	Intergenic	Intergenic	-1180	NM_032390	84365		NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
82540	chr16	18397271	18397630	+	0	NA	intron (NR_146331, intron 1 of 37)	AluY|SINE|Alu	4475	NR_146331	110006322		NR_146331		PKD1P5-LOC105376752	-	PKD1P5-LOC105376752 readthrough	pseudo
154937	chr22	37226671	37227630	+	0	NA	intron (NM_002872, intron 5 of 6)	intron (NM_002872, intron 5 of 6)	-14673	NM_001051	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
52013	chr12	53980201	53980430	+	0	NA	Intergenic	Intergenic	-4831	NM_017409	3226		NM_017409	ENSG00000180818	HOXC10	HOX3I	homeobox C10	protein-coding
1121	chr1	2126721	2128330	+	0	NA	intron (NM_001033582, intron 1 of 14)	intron (NM_001033582, intron 1 of 14)	22809	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
176815	chr4	102546421	102546880	+	0	NA	intron (NM_001382625, intron 6 of 24)	L1MEd|LINE|L1	-44164	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
43539	chr11	82889821	82890180	+	0	NA	intron (NM_199418, intron 1 of 9)	L2a|LINE|L2	10430	NM_005040	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
149729	chr21	34201771	34202530	+	0	NA	Intergenic	CpG	21473	NR_027266	114036		NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
28916	chr10	63165601	63166150	+	0	NA	Intergenic	AluJo|SINE|Alu	32547	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
70313	chr14	101821431	101822180	+	0	NA	intron (NM_001161725, intron 3 of 15)	intron (NM_001161725, intron 3 of 15)	11942	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
198572	chr6	107116601	107116900	+	0	NA	Intergenic	Intergenic	-1235	NM_001367314	57673		NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
57210	chr12	121503971	121504130	+	0	NA	intron (NM_001005366, intron 11 of 22)	intron (NM_001005366, intron 11 of 22)	-59698	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
30275	chr10	75165471	75165850	+	0	NA	intron (NM_144660, intron 3 of 4)	AluY|SINE|Alu	-44494	NM_001324087	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
92779	chr17	15703421	15703830	+	0	NA	intron (NM_001369437, intron 3 of 3)	intron (NM_001369437, intron 3 of 3)	3873	NM_001369436	57335		NM_020652	ENSG00000187607	ZNF286A	ZNF286	zinc finger protein 286A	protein-coding
2735	chr1	10665271	10665630	+	0	NA	exon (NM_001079843, exon 5 of 21)	exon (NM_001079843, exon 5 of 21)	131196	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
43768	chr11	86243851	86244700	+	0	NA	promoter-TSS (NM_003797)	promoter-TSS (NM_003797)	-109	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
76011	chr15	71443471	71443630	+	0	NA	intron (NM_024817, intron 6 of 16)	intron (NM_024817, intron 6 of 16)	-103686	NM_001286429	79875		NM_024817	ENSG00000187720	THSD4	AAT12|ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin type 1 domain containing 4	protein-coding
90905	chr17	2482021	2482680	+	0	NA	intron (NM_024086, intron 2 of 9)	MER6B|DNA|TcMar-Tigger	29538	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
143019	chr20	20824971	20825200	+	0	NA	Intergenic	Intergenic	-112441	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
42055	chr11	67466451	67466930	+	0	NA	intron (NR_073412, intron 4 of 6)	intron (NR_073412, intron 4 of 6)	2561	NR_073410	80194		NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding
86236	chr16	58130501	58130880	+	0	NA	Intergenic	AluY|SINE|Alu	-1265	NR_136632	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
193649	chr6	30877301	30878250	+	0	NA	Intergenic	Intergenic	-4838	NM_001297652	780		NM_001954	ENSG00000204580	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
87433	chr16	70698371	70698530	+	0	NA	intron (NM_001351157, intron 14 of 17)	intron (NM_001351157, intron 14 of 17)	-12397	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
146077	chr20	47509151	47509830	+	0	NA	intron (NM_181659, intron 1 of 22)	intron (NM_181659, intron 1 of 22)	7603	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
106255	chr18	12307801	12308600	+	0	NA	promoter-TSS (NM_001303527)	promoter-TSS (NM_001303527)	-41	NM_001303530	84617		NM_032525	ENSG00000176014	TUBB6	FPVEPD|HsT1601|TUBB-5	tubulin beta 6 class V	protein-coding
200744	chr6	137790101	137791000	+	0	NA	Intergenic	Intergenic	-51513	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
68816	chr14	91259671	91260150	+	0	NA	Intergenic	Intergenic	-6030	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
147556	chr20	60057301	60057760	+	0	NA	non-coding (NR_126504, exon 2 of 2)	non-coding (NR_126504, exon 2 of 2)	1605	NR_126504	284756		NR_126504	ENSG00000176659	LINC02910	C20orf197	long intergenic non-protein coding RNA 2910	ncRNA
85164	chr16	46632971	46633380	+	0	NA	Intergenic	MER52C|LTR|ERV1	-11796	NM_001324318	79801		NM_024745	ENSG00000171241	SHCBP1	PAL	SHC binding and spindle associated 1	protein-coding
191940	chr6	15881221	15881480	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-218292	NM_001271669	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
155679	chr22	39044421	39045100	+	0	NA	TTS (NM_001006666)	TTS (NM_001006666)	3896	NM_001006666	200316		NM_145298	ENSG00000128394	APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	apolipoprotein B mRNA editing enzyme catalytic subunit 3F	protein-coding
178622	chr4	152105971	152106650	+	0	NA	Intergenic	Intergenic	5492	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
177434	chr4	112522571	112523230	+	0	NA	intron (NR_161159, intron 1 of 3)	intron (NR_161159, intron 1 of 3)	-6720	NM_024019	63973		NM_024019	ENSG00000178403	NEUROG2	Atoh4|Math4A|NGN2|bHLHa8|ngn-2	neurogenin 2	protein-coding
237876	chrX	130902001	130902230	+	0	NA	intron (NM_001382522, intron 1 of 14)	intron (NM_001382522, intron 1 of 14)	1094	NM_001382518	10495		NM_006375	ENSG00000165675	ENOX2	APK1|COVA1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding
105828	chr18	2976101	2976650	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	-29752	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
53637	chr12	68199351	68199650	+	0	NA	Intergenic	Intergenic	26310	NM_018402	55801		NM_018402	ENSG00000111536	IL26	AK155|IL-26	interleukin 26	protein-coding
10592	chr1	67422601	67423330	+	0	NA	intron (NM_001018067, intron 5 of 7)	(AAACA)n|Simple_repeat|Simple_repeat	7437	NM_001018067	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
121094	chr19	45904951	45905050	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2387	NM_001012643	339344		NM_001012643	ENSG00000176182	MYPOP	P42pop	Myb related transcription factor, partner of profilin	protein-coding
111225	chr19	3504151	3504880	+	0	NA	Intergenic	AluSz|SINE|Alu	-1796	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
13150	chr1	111695751	111696300	+	0	NA	intron (NM_002884, intron 3 of 7)	L1MC1|LINE|L1	31231	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
61549	chr13	60427201	60428200	+	0	NA	intron (NM_001146070, intron 1 of 13)	intron (NM_001146070, intron 1 of 13)	30480	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
229716	chr9	124855871	124856030	+	0	NA	exon (NM_001276376, exon 3 of 8)	exon (NM_001276376, exon 3 of 8)	2490	NM_001276375	401551		NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
187458	chr5	142121721	142122180	+	0	NA	intron (NM_030571, intron 1 of 7)	L2b|LINE|L2	13171	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
65541	chr14	51924421	51925100	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-6189	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
50964	chr12	49547521	49548000	+	0	NA	intron (NM_001314030, intron 7 of 14)	intron (NM_001314030, intron 7 of 14)	8730	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
143313	chr20	25389071	25389230	+	0	NA	intron (NM_001042472, intron 1 of 12)	intron (NM_001042472, intron 1 of 12)	1685	NM_015600	26090		NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12	abhydrolase domain containing 12, lysophospholipase	protein-coding
103188	chr17	77454551	77455030	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	763	NM_001293698	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
9665	chr1	52685871	52686630	+	0	NA	3' UTR (NM_023077, exon 3 of 3)	3' UTR (NM_023077, exon 3 of 3)	12097	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
125265	chr2	10441121	10441380	+	0	NA	intron (NM_001287190, intron 11 of 11)	intron (NM_001287190, intron 11 of 11)	5599	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
45192	chr11	117443601	117443800	+	0	NA	intron (NM_020693, intron 21 of 32)	intron (NM_020693, intron 21 of 32)	115846	NM_014956	22897		NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
196264	chr6	42931421	42931680	+	0	NA	intron (NR_134881, intron 2 of 7)	AluSx|SINE|Alu	2070	NR_134891	107080644		NM_001318856		CNPY3-GNMT	-	CNPY3-GNMT readthrough	protein-coding
232428	chr9	136097821	136098080	+	0	NA	Intergenic	Intergenic	-2661	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
223026	chr8	143331801	143332330	+	0	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	2815	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
46300	chr11	124879701	124879900	+	0	NA	exon (NM_001370364, exon 9 of 11)	exon (NM_001370364, exon 9 of 11)	2986	NM_001370357	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
23278	chr1	227969351	227969650	+	0	NA	Intergenic	Intergenic	2489	NR_153418	107985355		NR_153418		LOC107985355	-	uncharacterized LOC107985355	ncRNA
161322	chr3	39413851	39414800	+	0	NA	Intergenic	Intergenic	3271	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
10261	chr1	64490301	64490500	+	0	NA	intron (NM_020925, intron 1 of 26)	intron (NM_020925, intron 1 of 26)	-15514	NM_001293274	57685		NM_020925	ENSG00000158966	CACHD1	-	cache domain containing 1	protein-coding
58947	chr13	19777671	19777830	+	0	NA	intron (NM_001354909, intron 1 of 8)	AluSg|SINE|Alu	5195	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
172208	chr4	1294071	1294780	+	0	NA	intron (NR_123716, intron 1 of 6)	intron (NR_123716, intron 1 of 6)	4534	NM_001297431	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
201546	chr6	149212251	149212350	+	0	NA	Intergenic	Intergenic	-5624	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
89820	chr16	89569201	89569730	+	0	NA	Intergenic	Intergenic	-6293	NM_014427	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
235985	chrX	53854021	53854100	+	0	NA	Intergenic	L1PA4|LINE|L1	-167341	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
148251	chr20	63650751	63650850	+	0	NA	intron (NR_075070, intron 1 of 4)	intron (NR_075070, intron 1 of 4)	1966	NM_001276310	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
199289	chr6	111983371	111983530	+	0	NA	Intergenic	Intergenic	-70654	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
200643	chr6	136989671	136990150	+	0	NA	intron (NR_027994, intron 2 of 2)	intron (NR_027994, intron 2 of 2)	3321	NR_027994	100294720		NR_027994	ENSG00000225391	NHEG1	-	neuroblastoma highly expressed DDX5 stabilizing lncRNA 1	ncRNA
189846	chr5	177111601	177112450	+	0	NA	Intergenic	Intergenic	-21054	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
59001	chr13	20124771	20125130	+	0	NA	Intergenic	AluSx1|SINE|Alu	22249	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
227486	chr9	91164521	91165580	+	0	NA	intron (NR_135306, intron 2 of 2)	intron (NR_135306, intron 2 of 2)	45988	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
102725	chr17	76197571	76198180	+	0	NA	intron (NM_052916, intron 2 of 18)	HERV16-int|LTR|ERVL	42618	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
231453	chr9	131273071	131274300	+	0	NA	intron (NM_033387, intron 1 of 1)	intron (NM_033387, intron 1 of 1)	2825	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
91867	chr17	7235801	7236350	+	0	NA	exon (NM_001284517, exon 4 of 5)	exon (NM_001284517, exon 4 of 5)	-1558	NM_004422	1856		NM_004422	ENSG00000004975	DVL2	-	dishevelled segment polarity protein 2	protein-coding
168947	chr3	152372471	152372630	+	0	NA	intron (NM_001376837, intron 2 of 9)	L1PA7|LINE|L1	-31560	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
15446	chr1	150307551	150307650	+	0	NA	intron (NM_031901, intron 2 of 2)	AluJb|SINE|Alu	13739	NM_031901	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
84424	chr16	30375501	30376150	+	0	NA	exon (NM_001324459, exon 4 of 9)	exon (NM_001324459, exon 4 of 9)	1023	NM_013292	29895		NM_013292	ENSG00000180209	MYL11	DA1C|HUMMLC2B|MLC2B|MRLC2|MYLPF	myosin light chain 11	protein-coding
158250	chr22	50305551	50305930	+	0	NA	intron (NM_001376879, intron 1 of 38)	intron (NM_001376879, intron 1 of 38)	1906	NM_001376886	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
54064	chr12	76027501	76028100	+	0	NA	3' UTR (NM_007350, exon 2 of 2)	3' UTR (NM_007350, exon 2 of 2)	3976	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
190593	chr5	181103651	181104380	+	0	NA	Intergenic	CpG	21289	NM_001258283	26693		NM_001258283	ENSG00000185372	OR2V1	OR2V1P|OST265	olfactory receptor family 2 subfamily V member 1	protein-coding
112402	chr19	6156071	6156230	+	0	NA	intron (NM_001289180, intron 5 of 14)	MIR3|SINE|MIR	20483	NM_001289179	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
14479	chr1	144522511	144523000	+	0	NA	Intergenic	Intergenic	29188	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
219159	chr8	66455851	66456150	+	0	NA	intron (NM_144650, intron 10 of 13)	intron (NM_144650, intron 10 of 13)	23496	NM_144650	137872		NM_144650	ENSG00000147576	ADHFE1	ADH8|HMFT2263|HOT	alcohol dehydrogenase iron containing 1	protein-coding
108454	chr18	70289701	70289900	+	0	NA	intron (NM_004232, intron 1 of 1)	CpG	755	NM_004232	9306		NM_004232	ENSG00000170677	SOCS6	CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4	suppressor of cytokine signaling 6	protein-coding
30622	chr10	80250401	80250700	+	0	NA	intron (NR_136612, intron 5 of 5)	intron (NR_136612, intron 5 of 5)	2792	NR_136612	100130698		NR_136612		LOC100130698	-	uncharacterized LOC100130698	ncRNA
169333	chr3	159990871	159991230	+	0	NA	intron (NM_001354583, intron 2 of 5)	intron (NM_001354583, intron 2 of 5)	2215	NM_001354582	3592		NM_000882	ENSG00000168811	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
191696	chr6	13618851	13618950	+	0	NA	intron (NM_016167, intron 5 of 7)	AluJb|SINE|Alu	3565	NM_016167	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
120238	chr19	42386901	42388000	+	0	NA	exon (NM_032488, exon 3 of 4)	exon (NM_032488, exon 3 of 4)	2847	NM_032488	84518		NM_032488	ENSG00000105427	CNFN	PLAC8L2	cornifelin	protein-coding
221297	chr8	123012171	123012530	+	0	NA	TTS (NM_001330601)	TTS (NM_001330601)	13422	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
144009	chr20	33350521	33350900	+	0	NA	Intergenic	AluY|SINE|Alu	50809	NM_016408	51654		NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
38841	chr11	47322101	47322500	+	0	NA	intron (NR_164842, intron 29 of 33)	intron (NR_164842, intron 29 of 33)	30402	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
16751	chr1	155319371	155319730	+	0	NA	TTS (NR_145426)	TTS (NR_145426)	-1344	NM_001105204	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
198192	chr6	96885151	96885500	+	0	NA	Intergenic	AluSq2|SINE|Alu	12566	NM_014165	29078		NM_014165	ENSG00000123545	NDUFAF4	C6orf66|HRPAP20|HSPC125|MC1DN15|My013|bA22L21.1	NADH:ubiquinone oxidoreductase complex assembly factor 4	protein-coding
51718	chr12	53208751	53209930	+	0	NA	Intergenic	Intergenic	-2089	NM_000889	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
141689	chr2	241812351	241812650	+	0	NA	intron (NM_080741, intron 1 of 3).2	intron (NM_080741, intron 1 of 3).2	1104	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
50016	chr12	42396821	42397080	+	0	NA	intron (NM_201515, intron 9 of 10)	AluJb|SINE|Alu	65152	NM_001364834	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
71188	chr14	105055451	105056480	+	0	NA	5' UTR (NM_013345, exon 3 of 4)	5' UTR (NM_013345, exon 3 of 4)	9465	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
64847	chr14	35203601	35204550	+	0	NA	intron (NM_001256678, intron 4 of 6)	intron (NM_001256678, intron 4 of 6)	-74483	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
151561	chr21	46558001	46558530	+	0	NA	exon (NM_015151, exon 32 of 38)	exon (NM_015151, exon 32 of 38)	46817	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
32085	chr10	101132621	101132980	+	0	NA	intron (NM_005521, intron 1 of 2)	intron (NM_005521, intron 1 of 2)	1500	NM_005521	3195		NM_005521	ENSG00000107807	TLX1	HOX11|TCL3	T cell leukemia homeobox 1	protein-coding
34399	chr10	132384901	132385650	+	0	NA	Intergenic	L1MEj|LINE|L1	-11925	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
88489	chr16	85114621	85115550	+	0	NA	Intergenic	Intergenic	-2613	NM_001366920	339145		NM_198491	ENSG00000153789	CIBAR2	FAM92B	CBY1 interacting BAR domain containing 2	protein-coding
71881	chr15	22469301	22469500	+	0	NA	Intergenic	Intergenic	12974	NR_036470	100132101		NR_036470		HERC2P7	-	HERC2 pseudogene 7	pseudo
75889	chr15	69757201	69757700	+	0	NA	Intergenic	Intergenic	-77784	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
206117	chr7	27242221	27243100	+	0	NA	promoter-TSS (NM_001304519)	promoter-TSS (NM_001304519)	-142	NM_001989	2128		NM_001989	ENSG00000106038	EVX1	EVX-1	even-skipped homeobox 1	protein-coding
148619	chr21	5548471	5548630	+	0	NA	Intergenic	Intergenic	-5087	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
214093	chr7	143702401	143702600	+	0	NA	intron (NM_001363538, intron 2 of 11)	intron (NM_001363538, intron 2 of 11)	-13346	NM_001130026	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
136119	chr2	173944351	173944450	+	0	NA	intron (NM_001172712, intron 4 of 6)	AluJb|SINE|Alu	19480	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
35516	chr11	1552951	1553380	+	0	NA	TTS (NM_004420)	TTS (NM_004420)	19106	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
26418	chr10	17206001	17206800	+	0	NA	Intergenic	MIR|SINE|MIR	-4329	NM_001351223	1787		NM_004412	ENSG00000107614	TRDMT1	DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1	tRNA aspartic acid methyltransferase 1	protein-coding
215495	chr7	158589271	158589600	+	0	NA	Intergenic	Intergenic	-1194	NR_132379	105375616		NR_132379		LINC01022	-	long intergenic non-protein coding RNA 1022	ncRNA
203179	chr6	167121101	167121300	+	0	NA	intron (NM_004367, intron 1 of 2)	intron (NM_004367, intron 1 of 2)	-1553	NM_031409	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
133177	chr2	112821651	112822180	+	0	NA	Intergenic	Intergenic	14864	NM_000576	3553		NM_000576	ENSG00000125538	IL1B	IL-1|IL1-BETA|IL1F2|IL1beta	interleukin 1 beta	protein-coding
149296	chr21	28831251	28831350	+	0	NA	Intergenic	AluSx1|SINE|Alu	54067	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
198049	chr6	90193521	90193780	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	103193	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
141560	chr2	241511351	241511950	+	0	NA	Intergenic	Intergenic	-2078	NM_001282305	10494		NM_006374	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
173944	chr4	25857121	25857980	+	0	NA	intron (NM_001297592, intron 1 of 23)	MIRb|SINE|MIR	5438	NM_015187	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
38148	chr11	35420071	35420400	+	0	NA	promoter-TSS (NM_001252652)	promoter-TSS (NM_001252652)	-177	NM_001195728	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
8378	chr1	40375701	40376300	+	0	NA	intron (NM_001198978, intron 1 of 9)	AluSq2|SINE|Alu	1367	NM_001198978	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
217318	chr8	27411971	27412130	+	0	NA	intron (NM_173174, intron 7 of 35)	MER21B|LTR|ERVL	-21320	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
91936	chr17	7335201	7335730	+	0	NA	Intergenic	Intergenic	-1064	NM_014716	9744		NM_014716	ENSG00000072818	ACAP1	CENTB1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding
72316	chr15	31256421	31256900	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-25798	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
94569	chr17	29624451	29625350	+	0	NA	Intergenic	MIRc|SINE|MIR	-3477	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
78920	chr15	101205701	101206560	+	0	NA	intron (NM_014918, intron 2 of 2)	intron (NM_014918, intron 2 of 2)	45918	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
54916	chr12	96134101	96134500	+	0	NA	Intergenic	Intergenic	-60075	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
63598	chr14	20486901	20487830	+	0	NA	Intergenic	Intergenic	-16868	NM_001012975	338879		NM_001012975	ENSG00000182545	RNASE10	RAH1|RNASE9	ribonuclease A family member 10 (inactive)	protein-coding
169528	chr3	170155671	170155830	+	0	NA	intron (NM_001308116, intron 4 of 14)	intron (NM_001308116, intron 4 of 14)	25983	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
166062	chr3	108828351	108828680	+	0	NA	intron (NM_001317747, intron 1 of 4)	intron (NM_001317747, intron 1 of 4)	5729	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
17559	chr1	156809051	156810200	+	0	NA	intron (NM_001161444, intron 6 of 7)	intron (NM_001161444, intron 6 of 7)	-6125	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
120547	chr19	44951371	44952030	+	0	NA	Intergenic	MSR1|Satellite|Satellite	-2885	NM_001282176	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
134401	chr2	138504751	138505350	+	0	NA	intron (NM_001001664, intron 1 of 10)	intron (NM_001001664, intron 1 of 10)	3280	NM_001001664	339745		NM_001001664	ENSG00000144228	SPOPL	BTBD33	speckle type BTB/POZ protein like	protein-coding
19946	chr1	184806671	184807030	+	0	NA	intron (NM_052966, intron 10 of 13)	AluSz|SINE|Alu	-51992	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
148787	chr21	8222301	8223240	+	0	NA	intron (NR_003287, intron 1 of 2)	AluSz6|SINE|Alu	8882	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
122829	chr19	50416821	50417080	+	0	NA	intron (NR_046402, intron 23 of 25)	intron (NR_046402, intron 23 of 25)	-1988	NM_003121	6689		NM_003121	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor	protein-coding
113745	chr19	10492951	10493050	+	0	NA	intron (NM_012289, intron 2 of 5)	AluSx|SINE|Alu	9771	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
154289	chr22	31692071	31692830	+	0	NA	intron (NM_173566, intron 7 of 8)	L1MB7|LINE|L1	-29886	NM_001326421	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
22421	chr1	220091551	220091850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1847	NM_001286150	10380		NM_006085	ENSG00000162813	BPNT1	HEL20|HsPIP|PIP	3'(2'), 5'-bisphosphate nucleotidase 1	protein-coding
5862	chr1	26738521	26738780	+	0	NA	intron (NM_139135, intron 4 of 19)	AluSz|SINE|Alu	42635	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
71723	chr15	20353001	20353800	+	0	NA	Intergenic	AluSq2|SINE|Alu	70656	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
100296	chr17	59761701	59761900	+	0	NA	intron (NM_001329397, intron 5 of 10)	L1MEc|LINE|L1	54146	NM_001329401	81671		NM_030938	ENSG00000062716	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding
43842	chr11	87173521	87174050	+	0	NA	intron (NM_022918, intron 5 of 14)	intron (NM_022918, intron 5 of 14)	135851	NM_001168724	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
112594	chr19	6711871	6712230	+	0	NA	intron (NM_000064, intron 11 of 40)	intron (NM_000064, intron 11 of 40)	8600	NM_000064	718		NM_000064	ENSG00000125730	C3	AHUS5|ARMD9|ASP|C3a|C3b|CPAMD1|HEL-S-62p	complement C3	protein-coding
152514	chr22	20957301	20958700	+	0	NA	intron (NR_110537, intron 1 of 1)	intron (NR_110537, intron 1 of 1)	908	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
171126	chr3	195536501	195536950	+	0	NA	intron (NM_006241, intron 1 of 5)	AluSq2|SINE|Alu	6600	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
21932	chr1	207861521	207862250	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-39182	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
141717	chr2	241851801	241852180	+	0	NA	intron (NM_005018, intron 3 of 4)	intron (NM_005018, intron 3 of 4)	6904	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
111467	chr19	3938221	3938680	+	0	NA	intron (NM_170678, intron 4 of 7)	CpG	4979	NM_001375469	27231		NM_014446	ENSG00000077009	NMRK2	ITGB1BP3|MIBP|NRK2	nicotinamide riboside kinase 2	protein-coding
94738	chr17	30789401	30789600	+	0	NA	intron (NR_144394, intron 8 of 8)	intron (NR_144394, intron 8 of 8)	35192	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
209163	chr7	75238871	75239400	+	0	NA	intron (NM_001382495, intron 1 of 8).2	AluSx1|SINE|Alu	-1430	NR_002206	2970		NR_002206	ENSG00000290871	GTF2IP1	WBSCR7	general transcription factor IIi pseudogene 1	pseudo
125427	chr2	11778971	11779600	+	0	NA	intron (NM_001349204, intron 7 of 21)	intron (NM_001349204, intron 7 of 21)	11841	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
182714	chr5	68244601	68244800	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	28944	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
97184	chr17	42677901	42678650	+	0	NA	TTS (NM_016602)	TTS (NM_016602)	-1281	NR_073573	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
161220	chr3	39182021	39182480	+	0	NA	TTS (NM_001351377)	TTS (NM_001351377)	10345	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
73969	chr15	51846421	51847080	+	0	NA	intron (NM_014547, intron 1 of 9)	intron (NM_014547, intron 1 of 9)	17097	NM_014547	29766		NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
177482	chr4	113900651	113900750	+	0	NA	3' UTR (NM_024590, exon 2 of 2)	3' UTR (NM_024590, exon 2 of 2)	78947	NM_001354210	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
185923	chr5	132867901	132868650	+	0	NA	3' UTR (NM_014402, exon 3 of 3)	3' UTR (NM_014402, exon 3 of 3)	-1391	NM_001288825	2661		NM_005260	ENSG00000164404	GDF9	POF14	growth differentiation factor 9	protein-coding
190173	chr5	178153301	178154830	+	0	NA	promoter-TSS (NM_001034833)	promoter-TSS (NM_001034833)	-105	NM_001034833	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
3103	chr1	12207471	12207850	+	0	NA	3' UTR (NM_001066, exon 10 of 10)	3' UTR (NM_001066, exon 10 of 10)	15947	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
61832	chr13	75869971	75870630	+	0	NA	promoter-TSS (NR_164111)	promoter-TSS (NR_164111)	-738	NR_164111	729420		NM_001257995	ENSG00000178734	LMO7DN	C13orf45	LMO7 downstream neighbor	ncRNA
120825	chr19	45493201	45494150	+	0	NA	promoter-TSS (NM_206901)	promoter-TSS (NM_206901)	-422	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
100268	chr17	59607971	59608280	+	0	NA	3' UTR (NM_001166301, exon 17 of 17)	3' UTR (NM_001166301, exon 17 of 17)	-11564	NM_001288653	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
117288	chr19	19482901	19483730	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	32233	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
20047	chr1	185439801	185440550	+	0	NA	Intergenic	Intergenic	-105136	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
47130	chr12	724171	724730	+	0	NA	Intergenic	Intergenic	-28129	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
158352	chr22	50460551	50460850	+	0	NA	exon (NM_001365819, exon 24 of 40)	exon (NM_001365819, exon 24 of 40)	14335	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
210436	chr7	100096821	100097080	+	0	NA	intron (NM_182776, intron 9 of 13)	AluYk3|SINE|Alu	-2876	NR_029831	406900		NR_029831	ENSG00000208036	MIR106B	MIRN106B|mir-106b	microRNA 106b	ncRNA
83703	chr16	28490251	28490780	+	0	NA	intron (NM_001286109, intron 1 of 13)	AluY|SINE|Alu	1559	NM_001286109	1201		NM_000086	ENSG00000188603	CLN3	BTN1|BTS|JNCL	CLN3 lysosomal/endosomal transmembrane protein, battenin	protein-coding
91307	chr17	4267471	4267630	+	0	NA	Intergenic	Intergenic	-3571	NR_047571	51479		NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
153981	chr22	30380471	30381030	+	0	NA	intron (NM_001017981, intron 5 of 8)	intron (NM_001017981, intron 5 of 8)	-2845	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
28064	chr10	43292971	43293680	+	0	NA	Intergenic	Intergenic	-26260	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
210897	chr7	101176551	101177180	+	0	NA	intron (NM_198571, intron 1 of 3)	intron (NM_198571, intron 1 of 3)	2371	NM_001369695	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
46895	chr11	134070621	134071080	+	0	NA	intron (NM_032801, intron 1 of 8)	intron (NM_032801, intron 1 of 8)	1778	NM_032801	83700		NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
46401	chr11	126317321	126318100	+	0	NA	intron (NM_014026, intron 2 of 5)	intron (NM_014026, intron 2 of 5)	13650	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
181490	chr5	42971171	42971330	+	0	NA	Intergenic	Intergenic	22083	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
11193	chr1	87953721	87954030	+	0	NA	Intergenic	Intergenic	-582220	NR_038324	100505768		NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
179712	chr5	11301	11990	+	0	NA	Intergenic	(TAACCC)n|Simple_repeat|Simple_repeat	-80523	NM_052909	153478		NM_052909	ENSG00000153404	PLEKHG4B	ARHGEF48	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
111838	chr19	4556321	4557250	+	0	NA	intron (NM_032108, intron 5 of 16)	intron (NM_032108, intron 5 of 16)	2899	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
53080	chr12	57733551	57733650	+	0	NA	intron (NM_014770, intron 5 of 17)	intron (NM_014770, intron 5 of 17)	4646	NM_001122772	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
101976	chr17	74745901	74746100	+	0	NA	3' UTR (NM_001006638, exon 9 of 9)	3' UTR (NM_001006638, exon 9 of 9)	-2613	NR_037409	100500847		NR_037409	ENSG00000284186	MIR3615	mir-3615	microRNA 3615	ncRNA
164621	chr3	66384101	66384500	+	0	NA	intron (NM_001377344, intron 12 of 17)	intron (NM_001377344, intron 12 of 17)	21467	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
173022	chr4	4492401	4492730	+	0	NA	intron (NM_001346282, intron 1 of 10)	intron (NM_001346282, intron 1 of 10)	-10865	NR_126434	104472519		NR_126434	ENSG00000248221	STX18-IT1	-	STX18 intronic transcript 1	ncRNA
144303	chr20	34717871	34718030	+	0	NA	intron (NM_001242539, intron 11 of 11)	intron (NM_001242539, intron 11 of 11)	13231	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
182613	chr5	66169371	66170200	+	0	NA	intron (NM_139168, intron 8 of 12)	intron (NM_139168, intron 8 of 12)	24950	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
199937	chr6	127903951	127904550	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-3169	NM_001164685	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
228626	chr9	105693801	105695980	+	0	NA	intron (NM_018112, intron 1 of 5)	CpG	349	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
46860	chr11	133931801	133932200	+	0	NA	intron (NM_001277285, intron 8 of 19)	intron (NM_001277285, intron 8 of 19)	24968	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
149268	chr21	26405851	26406150	+	0	NA	promoter-TSS (NR_135515)	promoter-TSS (NR_135515)	57	NR_135515	100996571		NR_135515	ENSG00000197934	CYYR1-AS1	-	CYYR1 antisense RNA 1	ncRNA
198227	chr6	98844851	98845200	+	0	NA	Intergenic	CpG	10451	NM_005604	5454		NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
128120	chr2	48318451	48318800	+	0	NA	intron (NM_001375452, intron 1 of 5)	intron (NM_001375452, intron 1 of 5)	3943	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
24947	chr10	1420871	1421100	+	0	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	-105645	NR_033387	642394		NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168	ADARB2 antisense RNA 1	ncRNA
55686	chr12	107492901	107493100	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	-87874	NM_001017523	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
198343	chr6	104858651	104858750	+	0	NA	intron (NR_146787, intron 1 of 21)	intron (NR_146787, intron 1 of 21)	846	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
222844	chr8	142616521	142616950	+	0	NA	Intergenic	Intergenic	-2256	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
207508	chr7	44772201	44772400	+	0	NA	Intergenic	Intergenic	16112	NM_174929	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
12438	chr1	104706871	104707030	+	0	NA	Intergenic	LTR12D|LTR|ERV1	633927	NR_033990	100129138		NR_033990	ENSG00000293061	THAP3P1	-	THAP3 pseudogene 1	pseudo
181761	chr5	50723321	50723580	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	56036	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
214399	chr7	149791151	149791450	+	0	NA	intron (NR_163594, intron 31 of 102)	intron (NR_163594, intron 31 of 102)	15258	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
143980	chr20	32858321	32858580	+	0	NA	promoter-TSS (NM_001143967)	promoter-TSS (NM_001143967)	-473	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
37447	chr11	18011201	18011580	+	0	NA	intron (NR_104041, intron 1 of 9)	MLT1B|LTR|ERVL-MaLR	1657	NR_104041	26297		NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
105235	chr17	82382551	82382850	+	0	NA	Intergenic	Intergenic	10935	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
138923	chr2	218216651	218218300	+	0	NA	promoter-TSS (NM_005731)	promoter-TSS (NM_005731)	78	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
22509	chr1	221780251	221780550	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-38224	NR_111940	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
190720	chr6	291301	293780	+	0	NA	exon (NM_001286555, exon 1 of 7)	exon (NM_001286555, exon 1 of 7)	483	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
115089	chr19	14228351	14229350	+	0	NA	Intergenic	Intergenic	-22681	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
87512	chr16	71853101	71853300	+	0	NA	3' UTR (NM_001137675, exon 3 of 3)	3' UTR (NM_001137675, exon 3 of 3)	7224	NM_001137675	342371		NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1 like	protein-coding
139233	chr2	219301801	219303000	+	0	NA	exon (NM_001199764, exon 6 of 23)	exon (NM_001199764, exon 6 of 23)	6570	NM_001199764	5798		NM_002846	ENSG00000054356	PTPRN	IA-2|IA-2/PTP|IA2|ICA512|R-PTP-N	protein tyrosine phosphatase receptor type N	protein-coding
94820	chr17	31320151	31320550	+	0	NA	intron (NM_014210, intron 1 of 1)	intron (NM_014210, intron 1 of 1)	1272	NM_014210	2123		NM_014210	ENSG00000126860	EVI2A	EVDA|EVI-2A|EVI2	ecotropic viral integration site 2A	protein-coding
66950	chr14	65824471	65824930	+	0	NA	Intergenic	Intergenic	353598	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
201924	chr6	151395151	151395700	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-3866	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
210391	chr7	99915701	99916400	+	0	NA	intron (NM_033091, intron 1 of 5)	MIRb|SINE|MIR	3480	NM_033091	89122		NM_033017	ENSG00000146833	TRIM4	RNF87	tripartite motif containing 4	protein-coding
108518	chr18	74295001	74295200	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-3137	NM_001190807	1528		NM_001914	ENSG00000166347	CYB5A	CYB5|MCB5|METAG	cytochrome b5 type A	protein-coding
226378	chr9	70271771	70272130	+	0	NA	intron (NM_015110, intron 3 of 24)	L2a|LINE|L2	12972	NM_015110	23137		NM_015110	ENSG00000198887	SMC5	ATELS2|SMC5L1	structural maintenance of chromosomes 5	protein-coding
118971	chr19	38863921	38866480	+	0	NA	Intergenic	AluJb|SINE|Alu	-12853	NM_001005335	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
127448	chr2	42189301	42189500	+	0	NA	intron (NM_019063, intron 1 of 22)	AluJr|SINE|Alu	-19169	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
30929	chr10	87219551	87219730	+	0	NA	Intergenic	MER101|LTR|ERV1	-5808	NM_001099338	728118		NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
179441	chr4	184409151	184409250	+	0	NA	intron (NM_002199, intron 5 of 8)	intron (NM_002199, intron 5 of 8)	-26894	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
99424	chr17	50110521	50110930	+	0	NA	3' UTR (NM_002611, exon 11 of 11)	3' UTR (NM_002611, exon 11 of 11)	15030	NM_001199899	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
28998	chr10	63377451	63377550	+	0	NA	intron (NM_001322258, intron 2 of 24)	AluSx4|SINE|Alu	-4452	NR_031566	100302150		NR_031566	ENSG00000221063	MIR1296	MIRN1296|hsa-mir-1296|mir-1296	microRNA 1296	ncRNA
202708	chr6	158822451	158823030	+	0	NA	TTS (NR_102425)	TTS (NR_102425)	-3372	NM_001111077	7430		NM_003379	ENSG00000092820	EZR	CVIL|CVL|HEL-S-105|VIL2	ezrin	protein-coding
45074	chr11	117067521	117068000	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSx1|SINE|Alu	30668	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
205661	chr7	22860571	22861050	+	0	NA	intron (NR_146320, intron 4 of 4)	intron (NR_146320, intron 4 of 4)	4197	NR_003075	692210		NR_003075	ENSG00000221740	SNORD93	HBII-336	small nucleolar RNA, C/D box 93	snoRNA
103996	chr17	80071671	80071830	+	0	NA	intron (NM_017950, intron 10 of 19)	MER47A|DNA|TcMar-Tigger	-27078	NR_039607	100616121		NR_039607	ENSG00000265561	MIR1268B	-	microRNA 1268b	ncRNA
4780	chr1	23553421	23553880	+	0	NA	Intergenic	MIRb|SINE|MIR	5851	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
183470	chr5	79249351	79249650	+	0	NA	intron (NM_152405, intron 1 of 10)	intron (NM_152405, intron 1 of 10)	13369	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
13310	chr1	113414151	113414550	+	0	NA	intron (NM_152900, intron 1 of 20)	L1PA6|LINE|L1	23835	NM_152900	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
235504	chrX	47157271	47157430	+	0	NA	intron (NM_005676, intron 2 of 23)	intron (NM_005676, intron 2 of 23)	12129	NM_152856	8241		NM_005676	ENSG00000182872	RBM10	DXS8237E|GPATC9|GPATCH9|MINAS-60|S1-1|TARPS|ZRANB5	RNA binding motif protein 10	protein-coding
160629	chr3	31539871	31540230	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	7125	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
128674	chr2	61473171	61473730	+	0	NA	Intergenic	AluY|SINE|Alu	-2363	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
52242	chr12	54405871	54406030	+	0	NA	intron (NM_002205, intron 9 of 29)	intron (NM_002205, intron 9 of 29)	13316	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
131222	chr2	95159001	95160400	+	0	NA	promoter-TSS (NM_001318005)	promoter-TSS (NM_001318005)	-115	NM_001318005	84874		NM_032788	ENSG00000144026	ZNF514	-	zinc finger protein 514	protein-coding
87388	chr16	70470801	70471330	+	0	NA	exon (NM_145059, exon 12 of 24)	exon (NM_145059, exon 12 of 24)	16470	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
101588	chr17	68082071	68082630	+	0	NA	Intergenic	AluSg4|SINE|Alu	-19205	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
91109	chr17	3670501	3670700	+	0	NA	TTS (NM_031298)	TTS (NM_031298)	1788	NM_031298	83460		NM_031298	ENSG00000127774	EMC6	RAB5IFL|TMEM93	ER membrane protein complex subunit 6	protein-coding
194432	chr6	33117771	33117950	+	0	NA	intron (NR_001435, intron 2 of 4)	LTR9C|LTR|ERV1	5344	NR_001435	3116		NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo
95101	chr17	34584921	34585230	+	0	NA	intron (NM_001304438, intron 1 of 8)	intron (NM_001304438, intron 1 of 8)	5493	NM_001304438	124842		NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding
215213	chr7	155997301	155997700	+	0	NA	Intergenic	Intergenic	34943	NR_168379	389602		NM_001291913	ENSG00000204876	LOC389602	-	uncharacterized LOC389602	ncRNA
203146	chr6	166961201	166961600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4850	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
205805	chr7	24381971	24382150	+	0	NA	Intergenic	Intergenic	97870	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
36290	chr11	3822771	3823130	+	0	NA	exon (NM_001346399, exon 4 of 9)	exon (NM_001346399, exon 4 of 9)	14390	NR_104272	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
215982	chr8	8850771	8851330	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	42580	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
198076	chr6	90241201	90241980	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	55253	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
187514	chr5	142419451	142419550	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	94207	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
103640	chr17	78756321	78757180	+	0	NA	intron (NM_017456, intron 1 of 12)	AluJb|SINE|Alu	-19848	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
34029	chr10	124717671	124718800	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	14207	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
71206	chr14	105076071	105076380	+	0	NA	Intergenic	Intergenic	-10795	NM_013345	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
211208	chr7	102622801	102623630	+	0	NA	Intergenic	Intergenic	-6457	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
170244	chr3	184228571	184230500	+	0	NA	promoter-TSS (NM_138345)	promoter-TSS (NM_138345)	-818	NM_138345	90113		NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
129856	chr2	72923571	72923730	+	0	NA	intron (NM_004097, intron 1 of 2)	intron (NM_004097, intron 1 of 2)	6131	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
128773	chr2	62215171	62216000	+	0	NA	promoter-TSS (NM_001319075)	promoter-TSS (NM_001319075)	64	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
209310	chr7	76049471	76049630	+	0	NA	TTS (NR_104165)	TTS (NR_104165)	1444	NM_001282403	4191		NM_005918	ENSG00000146701	MDH2	DEE51|EIEE51|M-MDH|MDH|MGC:3559|MOR1	malate dehydrogenase 2	protein-coding
95808	chr17	38739071	38739630	+	0	NA	intron (NM_001369614, intron 3 of 9)	intron (NM_001369614, intron 3 of 9)	7278	NM_001369615	7703		NM_007144	ENSG00000277258	PCGF2	MEL-18|RNF110|TPFS|ZNF144	polycomb group ring finger 2	protein-coding
56627	chr12	118317201	118317400	+	0	NA	intron (NM_001346487, intron 1 of 20)	AluY|SINE|Alu	42405	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
1286	chr1	2328771	2329130	+	0	NA	intron (NM_024848, intron 12 of 13)	intron (NM_024848, intron 12 of 13)	23711	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
36265	chr11	3788501	3789130	+	0	NA	intron (NR_157590, intron 1 of 31)	AluSp|SINE|Alu	8731	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
132405	chr2	105796901	105797870	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	52322	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
83226	chr16	23836501	23837430	+	0	NA	intron (NM_212535, intron 1 of 16)	intron (NM_212535, intron 1 of 16)	982	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
33541	chr10	119284821	119285280	+	0	NA	intron (NM_005308, intron 1 of 15)	L5|LINE|RTE-X	77479	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
156469	chr22	41257801	41258080	+	0	NA	intron (NM_001278651, intron 8 of 16)	intron (NM_001278651, intron 8 of 16)	-4890	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
223522	chr8	144109401	144110450	+	0	NA	exon (NM_001316309, exon 5 of 24)	exon (NM_001316309, exon 5 of 24)	2186	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
238322	chrX	149527001	149527240	+	0	NA	TTS (NR_027455)	TTS (NR_027455)	12632	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
146799	chr20	50942321	50942680	+	0	NA	intron (NM_003859, intron 5 of 8)	AluSg7|SINE|Alu	-11063	NM_181442	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
235165	chrX	41137521	41137850	+	0	NA	intron (NM_001039590, intron 6 of 44)	intron (NM_001039590, intron 6 of 44)	52240	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
150281	chr21	41877851	41879900	+	0	NA	intron (NM_022115, intron 2 of 30)	CpG-18433	469	NR_104257	63977		NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
67573	chr14	71542051	71542450	+	0	NA	intron (NM_001354289, intron 5 of 23)	(TCC)n|Simple_repeat|Simple_repeat	-44048	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
46529	chr11	128459321	128459930	+	0	NA	3' UTR (NM_001330451, exon 7 of 7)	3' UTR (NM_001330451, exon 7 of 7)	62685	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
80597	chr16	2917701	2918730	+	0	NA	intron (NM_032296, intron 2 of 9)	AluY|SINE|Alu	6236	NM_020912	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
165915	chr3	107065211	107065550	+	0	NA	Intergenic	Intergenic	175258	NR_028303	100302640		NR_028303		LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
231947	chr9	133135101	133136230	+	0	NA	intron (NM_001042368, intron 1 of 17)	MIRb|SINE|MIR	-4508	NM_001271774	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
109001	chr18	79699751	79700250	+	0	NA	intron (NM_001318511, intron 4 of 11)	Tigger1|DNA|TcMar-Tigger	18570	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
101949	chr17	74532951	74533350	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-1675	NM_174892	124599		NM_174892	ENSG00000178789	CD300LB	CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5	CD300 molecule like family member b	protein-coding
219500	chr8	73964751	73965250	+	0	NA	intron (NM_001204858, intron 1 of 4)	AluJb|SINE|Alu	6908	NM_001204861	6921		NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
216703	chr8	22227621	22228080	+	0	NA	intron (NR_156475, intron 2 of 5)	intron (NR_156475, intron 2 of 5)	4249	NM_014759	9796		NM_014759	ENSG00000168490	PHYHIP	DYRK1AP3|PAHX-AP|PAHXAP1	phytanoyl-CoA 2-hydroxylase interacting protein	protein-coding
168453	chr3	142987771	142987950	+	0	NA	intron (NR_125393, intron 2 of 4)	MLT1F2|LTR|ERVL-MaLR	13607	NR_034032	100289361		NR_034032	ENSG00000268129	LOC100289361	-	uncharacterized LOC100289361	ncRNA
140280	chr2	232333401	232333600	+	0	NA	intron (NR_046477, intron 15 of 18)	intron (NR_046477, intron 15 of 18)	-45251	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
109334	chr19	601821	602350	+	0	NA	intron (NM_001194, intron 1 of 7)	intron (NM_001194, intron 1 of 7)	12204	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
200407	chr6	134523571	134524190	+	0	NA	Intergenic	Intergenic	16125	NR_125855	101928304		NR_125855	ENSG00000232310	LINC03002	-	long intergenic non-protein coding RNA 3002	ncRNA
47883	chr12	6698921	6699330	+	0	NA	intron (NM_153685, intron 1 of 5)	AluSq2|SINE|Alu	1290	NM_001244015	196500		NM_153685	ENSG00000139200	PIANP	C12orf53|LEDA1|PANP|leda-1	PILR alpha associated neural protein	protein-coding
56974	chr12	120541771	120542130	+	0	NA	intron (NM_001330474, intron 1 of 16)	AluY|SINE|Alu	7594	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
130409	chr2	85336421	85336680	+	0	NA	Intergenic	AluJr|SINE|Alu	-8561	NM_001368095	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
157714	chr22	46431971	46433130	+	0	NA	intron (NM_001378328, intron 5 of 34)	intron (NM_001378328, intron 5 of 34)	96836	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
117794	chr19	29843201	29843600	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	31409	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
147052	chr20	53675001	53675300	+	0	NA	Intergenic	AluY|SINE|Alu	66796	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
166178	chr3	111676771	111677580	+	0	NA	intron (NR_046733, intron 1 of 1)	intron (NR_046733, intron 1 of 1)	258	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
98619	chr17	47778051	47778150	+	0	NA	Intergenic	Intergenic	43694	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
68898	chr14	91345051	91345350	+	0	NA	intron (NM_001080414, intron 4 of 29)	AluSg|SINE|Alu	72620	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
48054	chr12	7036751	7037280	+	0	NA	Intergenic	Intergenic	-18539	NM_005768	10162		NM_005768	ENSG00000111684	LPCAT3	C3F|LPCAT|LPLAT 5|LPLAT12|LPSAT|MBOAT5|OACT5|nessy	lysophosphatidylcholine acyltransferase 3	protein-coding
118308	chr19	35462321	35463530	+	0	NA	Intergenic	HAL1|LINE|L1	14668	NM_001370087	2867		NM_005306	ENSG00000126262	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
226901	chr9	79403571	79403730	+	0	NA	Intergenic	LTR105_Mam|LTR|ERVL	-168123	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
150000	chr21	36994371	36995000	+	0	NA	Intergenic	Intergenic	-4474	NM_001352515	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
230138	chr9	127733401	127733600	+	0	NA	exon (NM_130459, exon 3 of 3)	exon (NM_130459, exon 3 of 3)	1794	NM_001252018	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
216954	chr8	22997071	22997600	+	0	NA	intron (NM_001374791, intron 1 of 9)	intron (NM_001374791, intron 1 of 9)	563	NM_001374791	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
40785	chr11	64885351	64886380	+	0	NA	Intergenic	Intergenic	5381	NR_029578	406967		NR_029578	ENSG00000283926	MIR192	MIRN192|miR-192|miRNA192	microRNA 192	ncRNA
92217	chr17	7864471	7864630	+	0	NA	intron (NM_001330111, intron 3 of 4)	AluJr4|SINE|Alu	6547	NM_001330110	124637		NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
115383	chr19	15251701	15252000	+	0	NA	intron (NM_001379292, intron 11 of 11)	intron (NM_001379292, intron 11 of 11)	-18803	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
201199	chr6	143441601	143442200	+	0	NA	5' UTR (NM_001286259, exon 1 of 6)	5' UTR (NM_001286259, exon 1 of 6)	777	NM_001286259	134637		NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase tRNA specific 2	protein-coding
131197	chr2	95034321	95034580	+	0	NA	intron (NM_022440, intron 1 of 1)	intron (NM_022440, intron 1 of 1)	8742	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
16271	chr1	153997001	153998050	+	0	NA	intron (NM_001159484, intron 35 of 37)	AluJb|SINE|Alu	6763	NM_001030	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
48542	chr12	10218321	10218580	+	0	NA	intron (NM_031412, intron 2 of 3)	AluY|SINE|Alu	5573	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
120792	chr19	45450001	45452650	+	0	NA	promoter-TSS (NM_001369417)	promoter-TSS (NM_001369417)	222	NM_001369412	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
34197	chr10	129033801	129034200	+	0	NA	Intergenic	Intergenic	121167	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
10386	chr1	65008651	65008750	+	0	NA	intron (NM_001321853, intron 2 of 26)	AluJr|SINE|Alu	-6224	NR_119383	101927084		NR_119383	ENSG00000226891	LINC01359	-	long intergenic non-protein coding RNA 1359	ncRNA
117693	chr19	28481101	28481300	+	0	NA	intron (NR_110759, intron 5 of 9)	intron (NR_110759, intron 5 of 9)	-125488	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
157613	chr22	46050321	46050980	+	0	NA	non-coding (NR_165243, exon 2 of 2)	non-coding (NR_165243, exon 2 of 2)	-3196	NR_027034	150381		NR_027034		PRR34-AS1	-	PRR34 antisense RNA 1	ncRNA
103968	chr17	79987321	79987580	+	0	NA	intron (NM_019020, intron 3 of 11)	AluJo|SINE|Alu	-36597	NM_001271845	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
140001	chr2	230953651	230954050	+	0	NA	Intergenic	Intergenic	-28608	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
136060	chr2	172735671	172736100	+	0	NA	promoter-TSS (NM_001375875)	promoter-TSS (NM_001375875)	40	NM_001375867	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
68191	chr14	76744671	76744830	+	0	NA	Intergenic	L1PA5|LINE|L1	-16718	NM_014909	22846		NM_014909	ENSG00000071246	VASH1	KIAA1036|TTCP 1	vasohibin 1	protein-coding
26850	chr10	24873371	24873750	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	79046	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
159484	chr3	14152401	14153030	+	0	NA	intron (NR_148951, intron 8 of 13)	intron (NR_148951, intron 8 of 13)	25886	NR_148951	7508		NM_004628	ENSG00000154767	XPC	RAD4|XP3|XPCC|p125	XPC complex subunit, DNA damage recognition and repair factor	protein-coding
140334	chr2	232541251	232542100	+	0	NA	intron (NM_005199, intron 5 of 11)	intron (NM_005199, intron 5 of 11)	1983	NM_005199	1146		NM_005199	ENSG00000196811	CHRNG	ACHRG	cholinergic receptor nicotinic gamma subunit	protein-coding
216604	chr8	22052801	22053180	+	0	NA	promoter-TSS (NM_001114137)	promoter-TSS (NM_001114137)	-565	NM_001114137	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
47721	chr12	6459871	6460030	+	0	NA	intron (NR_147127, intron 6 of 8)	AluSx|SINE|Alu	7908	NR_147127	55080		NM_018009	ENSG00000139192	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein like	protein-coding
226651	chr9	74773921	74774200	+	0	NA	intron (NM_001177311, intron 24 of 38)	intron (NM_001177311, intron 24 of 38)	113287	NM_001177311	140803		NM_017662	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	transient receptor potential cation channel subfamily M member 6	protein-coding
109280	chr19	546701	546900	+	0	NA	intron (NM_001258351, intron 1 of 4)	AluY|SINE|Alu	2747	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
7107	chr1	32123751	32124050	+	0	NA	intron (NM_012316, intron 1 of 13)	AluSc|SINE|Alu	15844	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
201042	chr6	142146771	142148130	+	0	NA	promoter-TSS (NM_001324308)	promoter-TSS (NM_001324308)	187	NM_016485	51534		NM_016485	ENSG00000009844	VTA1	6orf55|C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1	vesicle trafficking 1	protein-coding
177995	chr4	139280001	139280780	+	0	NA	promoter-TSS (NM_032623)	promoter-TSS (NM_032623)	-165	NM_032623	84709		NM_032623	ENSG00000137463	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria localized glutamic acid rich protein	protein-coding
2711	chr1	10650671	10651280	+	0	NA	exon (NM_001079843, exon 12 of 21)	exon (NM_001079843, exon 12 of 21)	145671	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
70153	chr14	100290921	100291800	+	0	NA	3' UTR (NM_001291814, exon 5 of 5)	3' UTR (NM_001291814, exon 5 of 5)	14003	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
89005	chr16	87979601	87980600	+	0	NA	intron (NM_001384940, intron 1 of 11)	intron (NM_001384940, intron 1 of 11)	2947	NM_001384940	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
162625	chr3	48716651	48719080	+	0	NA	promoter-TSS (NR_027438)	promoter-TSS (NR_027438)	-587	NM_001190316	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
23208	chr1	227559771	227560180	+	0	NA	Intergenic	Intergenic	-3581	NM_001367909	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
182155	chr5	56516971	56517330	+	0	NA	intron (NR_161255, intron 4 of 5)	MLT2C1|LTR|ERVL	-35381	NR_104664	102467147		NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
149323	chr21	29030971	29031500	+	0	NA	intron (NM_006447, intron 3 of 17)	LTR16|LTR|ERVL	6567	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
38724	chr11	46697601	46698000	+	0	NA	intron (NM_004308, intron 1 of 12)	intron (NM_004308, intron 1 of 12)	2819	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
175509	chr4	74134221	74134480	+	0	NA	intron (NM_001351311, intron 2 of 7)	L1MA4|LINE|L1	11077	NM_001351310	441024		NM_001004346	ENSG00000163738	MTHFD2L	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like	protein-coding
169601	chr3	171165551	171166300	+	0	NA	intron (NM_001161560, intron 10 of 31)	intron (NM_001161560, intron 10 of 31)	-59166	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
46370	chr11	126262201	126262400	+	0	NA	TTS (NM_003139)	TTS (NM_003139)	6595	NM_003139	6734		NM_003139	ENSG00000182934	SRPRA	DP|SRPR|Sralpha	SRP receptor subunit alpha	protein-coding
223726	chr8	144469621	144470180	+	0	NA	intron (NM_145754, intron 12 of 16)	intron (NM_145754, intron 12 of 16)	3563	NM_001369769	90990		NM_145754	ENSG00000167702	KIFC2	-	kinesin family member C2	protein-coding
237125	chrX	106599501	106599700	+	0	NA	Intergenic	L1ME3A|LINE|L1	-12330	NM_001184782	55086		NM_018015	ENSG00000147231	RADX	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein-coding
149247	chr21	25733051	25733350	+	0	NA	intron (NM_001003697, intron 1 of 3)	MIRc|SINE|MIR	-1772	NM_002040	2551		NM_002040	ENSG00000154727	GABPA	E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07	GA binding protein transcription factor subunit alpha	protein-coding
229016	chr9	113737351	113737850	+	0	NA	Intergenic	Intergenic	-138682	NM_001318040	114991		NM_133374	ENSG00000157657	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
152963	chr22	23064971	23065550	+	0	NA	intron (NM_014433, intron 4 of 6)	intron (NM_014433, intron 4 of 6)	-5259	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
121794	chr19	47903871	47904750	+	0	NA	Intergenic	AluYa5|SINE|Alu	-3368	NR_004437	100126800		NR_004437		SNAR-A12	SNAR-A53102747	small NF90 (ILF3) associated RNA A12	snRNA
169951	chr3	179091251	179091830	+	0	NA	Intergenic	L1PA16|LINE|L1	-19027	NM_001375827	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
141332	chr2	240566301	240571000	+	0	NA	exon (NM_018226, exon 1 of 11)	exon (NM_018226, exon 1 of 11)	166	NM_018226	57140		NM_018226	ENSG00000142327	RNPEPL1	-	arginyl aminopeptidase like 1	protein-coding
37051	chr11	12216121	12217330	+	0	NA	intron (NR_144415, intron 7 of 26)	intron (NR_144415, intron 7 of 26)	53042	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
200044	chr6	129747901	129748900	+	0	NA	Intergenic	Intergenic	-38223	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
18345	chr1	161209451	161210250	+	0	NA	intron (NR_165188, intron 5 of 11)	intron (NR_165188, intron 5 of 11)	-5445	NM_004106	2207		NM_004106	ENSG00000158869	FCER1G	FCRG	Fc epsilon receptor Ig	protein-coding
193344	chr6	30211951	30212350	+	0	NA	intron (NM_003449, intron 1 of 9).3	L1MC3|LINE|L1	1256	NM_003449	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
100323	chr17	59842151	59842800	+	0	NA	TTS (NM_001329400)	TTS (NM_001329400)	1209	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
10718	chr1	75788371	75788530	+	0	NA	TTS (NR_002749)	TTS (NR_002749)	561	NR_002749	26805		NR_002749	ENSG00000207241	SNORD45A	RNU45A|U45a	small nucleolar RNA, C/D box 45A	snoRNA
135356	chr2	160409101	160409630	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	-1483	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
11016	chr1	84772121	84772780	+	0	NA	Intergenic	Intergenic	-81982	NM_001166295	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
14409	chr1	144302271	144302630	+	0	NA	promoter-TSS (NR_136328)	promoter-TSS (NR_136328)	91	NR_136328	101927429		NR_136328		KMT2CP1	-	lysine methyltransferase 2C pseudogene 1	pseudo
6669	chr1	29130801	29131380	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7187	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
102025	chr17	74853771	74853930	+	0	NA	intron (NM_001278553, intron 2 of 11)	intron (NM_001278553, intron 2 of 11)	6034	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
100247	chr17	59366851	59367250	+	0	NA	TTS (NR_039882)	TTS (NR_039882)	967	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
230249	chr9	127894801	127895530	+	0	NA	intron (NM_001287002, intron 2 of 5)	LTR41|LTR|ERVL	2243	NM_001287001	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
59071	chr13	20900001	20900530	+	0	NA	intron (NM_001372061, intron 1 of 19)	AluSx3|SINE|Alu	2509	NM_001372061	64328		NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
122410	chr19	49444801	49445650	+	0	NA	Intergenic	AluJb|SINE|Alu	-3698	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
8603	chr1	41528101	41528500	+	0	NA	intron (NM_001127714, intron 4 of 7)	(CACCCT)n|Simple_repeat|Simple_repeat	-43617	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
214871	chr7	151388421	151388680	+	0	NA	intron (NM_001284260, intron 3 of 5)	intron (NM_001284260, intron 3 of 5)	-20611	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
120596	chr19	45015671	45017700	+	0	NA	intron (NM_006509, intron 3 of 10)	intron (NM_006509, intron 3 of 10)	15221	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
106916	chr18	26159401	26159630	+	0	NA	intron (NM_144662, intron 4 of 6)	intron (NM_144662, intron 4 of 6)	25646	NM_001308188	143471		NM_144662	ENSG00000154611	PSMA8	PSMA7L	proteasome 20S subunit alpha 8	protein-coding
233976	chrX	2702571	2702730	+	0	NA	intron (NR_135623, intron 1 of 10)	L1PA14|LINE|L1	11355	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
20451	chr1	198543721	198543980	+	0	NA	Intergenic	Intergenic	-2905	NM_133326	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
234823	chrX	24167871	24168230	+	0	NA	intron (NM_001178085, intron 4 of 10)	intron (NM_001178085, intron 4 of 10)	18321	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
48746	chr12	10721271	10722400	+	0	NA	intron (NM_003651, intron 1 of 9)	intron (NM_003651, intron 1 of 9)	1488	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
121693	chr19	47540771	47541030	+	0	NA	exon (NM_001277075, exon 6 of 17)	exon (NM_001277075, exon 6 of 17)	-25837	NR_038456	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
169865	chr3	177220201	177220400	+	0	NA	Intergenic	Intergenic	-22818	NM_001374330	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
139421	chr2	222707821	222708580	+	0	NA	intron (NM_058165, intron 5 of 5)	AluSx1|SINE|Alu	36542	NM_058165	116255		NM_058165	ENSG00000124003	MOGAT1	DGAT2L|DGAT2L1|MGAT1	monoacylglycerol O-acyltransferase 1	protein-coding
56730	chr12	120123521	120125480	+	0	NA	Intergenic	Intergenic	-7747	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
98311	chr17	46245551	46246300	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-20558	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
179337	chr4	182915471	182915980	+	0	NA	intron (NM_001351744, intron 2 of 6)	intron (NM_001351744, intron 2 of 6)	1528	NM_001351747	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
111448	chr19	3818501	3819250	+	0	NA	intron (NM_015174, intron 12 of 18)	intron (NM_015174, intron 12 of 18)	-17076	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
50193	chr12	46182171	46182730	+	0	NA	TTS (NM_001077484)	TTS (NM_001077484)	84066	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
118645	chr19	37298851	37298950	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-13937	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
94075	chr17	27476921	27477180	+	0	NA	intron (NM_014238, intron 1 of 20)	MER41A|LTR|ERV1	5086	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
38212	chr11	36399271	36400030	+	0	NA	intron (NM_024841, intron 2 of 9)	intron (NM_024841, intron 2 of 9)	-1347	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
44759	chr11	112087871	112088030	+	0	NA	exon (NM_001276503, exon 2 of 3)	exon (NM_001276503, exon 2 of 3)	1077	NM_001276503	6392		NM_003002	ENSG00000204370	SDHD	CBT1|CII-4|CWS3|MC2DN3|PGL|PGL1|PPGL1|QPs3|SDH4|cybS	succinate dehydrogenase complex subunit D	protein-coding
201177	chr6	143027021	143027300	+	0	NA	intron (NR_038987, intron 1 of 2)	intron (NR_038987, intron 1 of 2)	10422	NR_038987	100507489		NR_038987		LINC01277	-	long intergenic non-protein coding RNA 1277	ncRNA
164508	chr3	62369021	62369280	+	0	NA	TTS (NM_018008)	TTS (NM_018008)	4400	NM_018008	55079		NM_018008	ENSG00000153266	FEZF2	FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312	FEZ family zinc finger 2	protein-coding
64648	chr14	31400151	31400250	+	0	NA	intron (NM_015473, intron 3 of 35)	intron (NM_015473, intron 3 of 35)	20350	NM_015473	25938		NM_015473	ENSG00000129493	HEATR5A	C14orf125|p200b	HEAT repeat containing 5A	protein-coding
131179	chr2	94583411	94583750	+	0	NA	intron (NR_024443, intron 2 of 3)	intron (NR_024443, intron 2 of 3)	3603	NR_024443	100133920		NR_024443	ENSG00000290941	LOC100133920	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
169739	chr3	172490151	172490780	+	0	NA	Intergenic	L1PA8|LINE|L1	32965	NM_001190943	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
78422	chr15	92393771	92393930	+	0	NA	promoter-TSS (NM_001330416)	promoter-TSS (NM_001330416)	-31	NM_006011	8128		NM_006011	ENSG00000140557	ST8SIA2	HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding
232245	chr9	134391301	134392650	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	12564	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
230027	chr9	127220451	127220750	+	0	NA	3' UTR (NM_001322324, exon 18 of 18)	3' UTR (NM_001322324, exon 18 of 18)	-43062	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
42682	chr11	72599971	72600130	+	0	NA	intron (NM_001243784, intron 4 of 30)	L2b|LINE|L2	15080	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
178943	chr4	159047621	159047880	+	0	NA	Intergenic	Intergenic	-12521	NM_152543	152940		NM_152543	ENSG00000164123	SPMIP2	C4orf45	sperm microtubule inner protein 2	protein-coding
100029	chr17	57993721	57994200	+	0	NA	Intergenic	Intergenic	-5706	NM_007146	7716		NM_007146	ENSG00000136451	VEZF1	CMD1OO|DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
83514	chr16	27450801	27451650	+	0	NA	3' UTR (NM_181079, exon 10 of 10)	3' UTR (NM_181079, exon 10 of 10)	2168	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
87716	chr16	75038671	75038830	+	0	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	39726	NM_032268	84937		NM_032268	ENSG00000186187	ZNRF1	NIN283	zinc and ring finger 1	protein-coding
119473	chr19	40439371	40439730	+	0	NA	Intergenic	LTR16D2|LTR|ERVL	3048	NM_013368	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
85993	chr16	57460851	57460950	+	0	NA	3' UTR (NM_020312, exon 9 of 9)	3' UTR (NM_020312, exon 9 of 9)	-1779	NM_032940	5432		NM_002694	ENSG00000102978	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	RNA polymerase II subunit C	protein-coding
171242	chr3	195786531	195787150	+	0	NA	exon (NM_001322468, exon 5 of 42)	exon (NM_001322468, exon 5 of 42)	25089	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
120568	chr19	44990651	44991700	+	0	NA	intron (NM_001282175, intron 11 of 13)	intron (NM_001282175, intron 11 of 13)	-10289	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
199630	chr6	121162921	121163200	+	0	NA	intron (NM_152730, intron 22 of 31)	L1HS|LINE|L1	171420	NM_152730	221322		NM_152730	ENSG00000146350	TBC1D32	BROMI|C6orf170|C6orf171	TBC1 domain family member 32	protein-coding
21430	chr1	205340851	205341150	+	0	NA	intron (NM_001271863, intron 5 of 8)	intron (NM_001271863, intron 5 of 8)	15922	NM_018203	55220		NM_018203	ENSG00000162873	KLHDC8A	-	kelch domain containing 8A	protein-coding
85822	chr16	56993101	56993550	+	0	NA	intron (NR_169520, intron 1 of 47)	L1MC4a|LINE|L1	3768	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
155374	chr22	38298001	38299130	+	0	NA	intron (NM_152221, intron 7 of 10)	intron (NM_152221, intron 7 of 10)	18868	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
143687	chr20	32114551	32114850	+	0	NA	intron (NM_001363731, intron 1 of 17)	intron (NM_001363731, intron 1 of 17)	4972	NM_001363731	9777		NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
69245	chr14	92902951	92903050	+	0	NA	Intergenic	Intergenic	4482	NR_135253	101929002		NR_135253	ENSG00000258499	LINC02287	-	long intergenic non-protein coding RNA 2287	ncRNA
222434	chr8	134830051	134830400	+	0	NA	Intergenic	Intergenic	-7844	NR_126028	552853		NR_126028	ENSG00000253433	NCRNA00250	C8orf24	non-protein coding RNA 250	ncRNA
207621	chr7	44998121	44998380	+	0	NA	Intergenic	MER89|LTR|ERV1	-1496	NR_030770	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
49190	chr12	15563621	15564230	+	0	NA	intron (NM_030671, intron 5 of 13)	intron (NM_030671, intron 5 of 13)	17314	NM_030668	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
146777	chr20	50911621	50912380	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-2209	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
97143	chr17	42559751	42560050	+	0	NA	Intergenic	L2a|LINE|L2	-2248	NM_001042532	80347		NM_025233	ENSG00000068120	COASY	DPCK|NBIA6|NBP|PCH12|PPAT|UKR1|pOV-2	Coenzyme A synthase	protein-coding
180159	chr5	1385601	1387380	+	0	NA	Intergenic	CpG	-6417	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
200922	chr6	139148421	139149000	+	0	NA	intron (NM_016217, intron 1 of 3)	AluSz|SINE|Alu	13630	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
143719	chr20	32279471	32279880	+	0	NA	intron (NM_004798, intron 1 of 8)	AluSp|SINE|Alu	2024	NM_004798	9371		NM_004798	ENSG00000101350	KIF3B	FLA8|HH0048|KLP-11|OTSC12|RP89	kinesin family member 3B	protein-coding
113469	chr19	9934001	9934650	+	0	NA	intron (NM_058164, intron 1 of 5)	intron (NM_058164, intron 1 of 5)	2190	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
90975	chr17	2699801	2700550	+	0	NA	intron (NM_015229, intron 9 of 25)	intron (NM_015229, intron 9 of 25)	-7256	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
172486	chr4	2239421	2239880	+	0	NA	intron (NM_024511, intron 2 of 4)	MamSINE1|SINE|tRNA-RTE	2471	NM_001303143	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
30205	chr10	74828221	74828930	+	0	NA	intron (NM_001370142, intron 1 of 16)	AluY|SINE|Alu	1975	NM_001370137	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
92709	chr17	14192721	14193550	+	0	NA	intron (NM_001303, intron 6 of 6)	intron (NM_001303, intron 6 of 6)	43727	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
186321	chr5	134592201	134592600	+	0	NA	Intergenic	Intergenic	40428	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
76449	chr15	74825101	74825550	+	0	NA	intron (NM_021819, intron 13 of 13)	intron (NM_021819, intron 13 of 13)	-1302	NM_001030005	594855		NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII|Nbla11589	complexin 3	protein-coding
4013	chr1	18931721	18932080	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	24776	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
149029	chr21	14591651	14592200	+	0	NA	3' UTR (NM_001256579, exon 7 of 7)	3' UTR (NM_001256579, exon 7 of 7)	-8523	NM_001256370	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
49165	chr12	14981151	14981250	+	0	NA	intron (NM_006205, intron 3 of 3)	intron (NM_006205, intron 3 of 3)	8158	NM_006205	5149		NM_006205	ENSG00000139053	PDE6H	ACHM6|RCD3	phosphodiesterase 6H	protein-coding
1553	chr1	3483621	3484100	+	0	NA	Intergenic	Intergenic	29195	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
43211	chr11	75428071	75428800	+	0	NA	intron (NM_001039548, intron 2 of 5)	CpG	2194	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
196534	chr6	43951351	43951530	+	0	NA	Intergenic	Intergenic	-49145	NR_160955	221416		NM_153246	ENSG00000181577	LINC03040	C6orf223	long intergenic non-protein coding RNA 3040	ncRNA
227208	chr9	88378371	88378680	+	0	NA	Intergenic	Intergenic	-9919	NM_006717	10927		NM_006717	ENSG00000106723	SPIN1	SPIN|TDRD24	spindlin 1	protein-coding
125535	chr2	14632601	14632800	+	0	NA	promoter-TSS (NM_001369364)	promoter-TSS (NM_001369364)	-17	NR_144632	151354		NM_145175	ENSG00000162981	LRATD1	FAM84A|NSE1|PP11517	LRAT domain containing 1	protein-coding
210846	chr7	101059171	101059780	+	0	NA	TTS (NM_001040105)	TTS (NM_001040105)	-26006	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
130224	chr2	84781981	84782600	+	0	NA	intron (NM_001370, intron 65 of 76)	Chap1_Mam|DNA|hAT-Charlie	98794	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
163040	chr3	49867071	49867230	+	0	NA	intron (NM_001320147, intron 1 of 11)	intron (NM_001320147, intron 1 of 11)	2756	NM_024046	79012		NM_024046	ENSG00000164076	CAMKV	1G5|VACAMKL	CaM kinase like vesicle associated	protein-coding
125902	chr2	24792701	24793880	+	0	NA	promoter-TSS (NM_001322101)	promoter-TSS (NM_001322101)	101	NM_001013663	391356		NM_001013663	ENSG00000184924	PTRHD1	C2orf79|NEDPBA	peptidyl-tRNA hydrolase domain containing 1	protein-coding
186827	chr5	139401801	139402130	+	0	NA	exon (NM_194296, exon 3 of 6)	exon (NM_194296, exon 3 of 6)	2124	NM_194296	202051		NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
194842	chr6	34420921	34421700	+	0	NA	intron (NM_001203245, intron 4 of 5)	AluSq2|SINE|Alu	4759	NM_001204091	6204		NM_001014	ENSG00000124614	RPS10	DBA9|S10|eS10	ribosomal protein S10	protein-coding
59803	chr13	30374101	30375000	+	0	NA	promoter-TSS (NR_024464)	promoter-TSS (NR_024464)	-636	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
187963	chr5	149367371	149367980	+	0	NA	intron (NM_001301057, intron 5 of 5)	intron (NM_001301057, intron 5 of 5)	9629	NM_001301054	78991		NM_024028	ENSG00000145882	PCYOX1L	-	prenylcysteine oxidase 1 like	protein-coding
233949	chrX	2520971	2521130	+	0	NA	Intergenic	Intergenic	-20074	NM_145177	207063		NM_145177	ENSG00000169084	DHRSX	CXorf11|DHRS5X|DHRS5Y|DHRSXY|DHRSY|SDR46C1|SDR7C6	dehydrogenase/reductase X-linked	protein-coding
103947	chr17	79852701	79853230	+	0	NA	Intergenic	MER63C|DNA|hAT-Blackjack	-13525	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
65166	chr14	49584071	49584550	+	0	NA	intron (NM_001351375, intron 2 of 2)	intron (NM_001351375, intron 2 of 2)	2070	NM_001032	6235		NM_001032	ENSG00000213741	RPS29	DBA13|S29|uS14	ribosomal protein S29	protein-coding
88814	chr16	87404701	87405100	+	0	NA	TTS (NM_022818)	TTS (NM_022818)	12564	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
32959	chr10	110448701	110448900	+	0	NA	Intergenic	Intergenic	-49107	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
128218	chr2	54040921	54041580	+	0	NA	intron (NM_001320587, intron 2 of 5)	L2a|LINE|L2	70137	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
163454	chr3	50606371	50606980	+	0	NA	3' UTR (NM_013324, exon 4 of 4)	3' UTR (NM_013324, exon 4 of 4)	5099	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
93182	chr17	17803551	17803650	+	0	NA	intron (NM_030665, intron 3 of 5)	AluJb|SINE|Alu	9945	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
125652	chr2	19971501	19972100	+	0	NA	intron (NM_020779, intron 8 of 26)	intron (NM_020779, intron 8 of 26)	18305	NM_020779	57539		NM_020779	ENSG00000118965	WDR35	CED2|CFAP118|FAP118|IFT121|IFTA1|SRTD7	WD repeat domain 35	protein-coding
156745	chr22	41826771	41827380	+	0	NA	TTS (NR_157279)	TTS (NR_157279)	-6030	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
230276	chr9	127923251	127923950	+	0	NA	intron (NM_173492, intron 4 of 4)	intron (NM_173492, intron 4 of 4)	3891	NM_173492	138429		NM_173492	ENSG00000167103	PIP5KL1	PIPKH	phosphatidylinositol-4-phosphate 5-kinase like 1	protein-coding
148802	chr21	8242111	8242330	+	0	NA	intron (NR_003287, intron 1 of 2)	intron (NR_003287, intron 1 of 2)	-7285	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
184151	chr5	95620001	95621760	+	0	NA	exon (NM_199243, exon 1 of 1)	exon (NM_199243, exon 1 of 1)	793	NM_199243	285601		NM_199243	ENSG00000178015	GPR150	PGR11	G protein-coupled receptor 150	protein-coding
75414	chr15	65772601	65774480	+	0	NA	intron (NM_001376919, intron 1 of 31)	L2c|LINE|L2	18753	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
35224	chr11	826921	828150	+	0	NA	promoter-TSS (NM_001286606)	promoter-TSS (NM_001286606)	-384	NM_001286606	283229		NM_173584	ENSG00000177685	CRACR2B	EFCAB4A	calcium release activated channel regulator 2B	protein-coding
166236	chr3	112132501	112133850	+	0	NA	promoter-TSS (NR_157393)	promoter-TSS (NR_157393)	73	NM_152785	257144		NM_152785	ENSG00000174500	GCSAM	GCAT2|GCET2|HGAL	germinal center associated signaling and motility	protein-coding
121288	chr19	46722771	46723630	+	0	NA	exon (NM_013403, exon 13 of 18)	exon (NM_013403, exon 13 of 18)	-6073	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
14521	chr1	144841601	144841800	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	123529	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
157155	chr22	42866251	42866750	+	0	NA	Intergenic	Intergenic	-9227	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
215778	chr8	2132551	2133050	+	0	NA	intron (NM_003970, intron 32 of 36).2	intron (NM_003970, intron 32 of 36).2	56211	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
83135	chr16	22898871	22899130	+	0	NA	intron (NM_006043, intron 1 of 1)	intron (NM_006043, intron 1 of 1)	84838	NM_006043	9956		NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate-glucosamine 3-sulfotransferase 2	protein-coding
79066	chr16	152871	153250	+	0	NA	intron (NM_005332, intron 1 of 2)	intron (NM_005332, intron 1 of 2)	416	NM_005332	3050		NM_005332	ENSG00000130656	HBZ	HBAZ|HBZ-T1|HBZ1	hemoglobin subunit zeta	protein-coding
212340	chr7	127430471	127430630	+	0	NA	Intergenic	L1PA7|LINE|L1	-37842	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
133042	chr2	112155321	112156000	+	0	NA	intron (NM_153214, intron 1 of 7)	intron (NM_153214, intron 1 of 7)	17275	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
40800	chr11	64904751	64905100	+	0	NA	intron (NM_015104, intron 24 of 40)	AluSx4|SINE|Alu	-2470	NR_106807	102466727		NR_106807	ENSG00000274314	MIR6749	hsa-mir-6749	microRNA 6749	ncRNA
212875	chr7	130870101	130870700	+	0	NA	Intergenic	Intergenic	6410	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
62299	chr13	98997121	98997380	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	18535	NM_001366677	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
44279	chr11	102295171	102295530	+	0	NA	Intergenic	Intergenic	-22134	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
45246	chr11	117985451	117986800	+	0	NA	promoter-TSS (NR_026691)	promoter-TSS (NR_026691)	-269	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
179516	chr4	184792921	184793450	+	0	NA	intron (NR_167704, intron 1 of 19)	intron (NR_167704, intron 1 of 19)	5861	NR_003542	643036		NR_003542	ENSG00000293200	SLED1	-	proteoglycan 3, pro eosinophil major basic protein 2 pseudogene	pseudo
34691	chr10	133389601	133391030	+	0	NA	intron (NR_109763, intron 5 of 5)	AluJr|SINE|Alu	-3842	NM_138384	92170		NM_138384	ENSG00000148824	MTG1	GTP|GTPBP7	mitochondrial ribosome associated GTPase 1	protein-coding
225009	chr9	33126821	33127280	+	0	NA	intron (NM_001378495, intron 2 of 5)	AluY|SINE|Alu	18358	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
23186	chr1	226942001	226942530	+	0	NA	intron (NM_020247, intron 1 of 14)	intron (NM_020247, intron 1 of 14)	1971	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
231968	chr9	133160851	133161400	+	0	NA	intron (NM_001288572, intron 3 of 6)	intron (NM_001288572, intron 3 of 6)	2789	NM_001288572	26301		NM_021996	ENSG00000148288	GBGT1	A3GALNT|FS|UNQ2513	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)	protein-coding
165103	chr3	71542501	71542900	+	0	NA	promoter-TSS (NR_031697)	promoter-TSS (NR_031697)	-611	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
179831	chr5	470851	471480	+	0	NA	non-coding (NR_024158, exon 2 of 2)	non-coding (NR_024158, exon 2 of 2)	1800	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
12793	chr1	109789121	109789850	+	0	NA	Intergenic	Intergenic	-25562	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
154853	chr22	37120071	37120230	+	0	NA	Intergenic	Intergenic	-10437	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
168188	chr3	140974851	140975330	+	0	NA	intron (NM_018155, intron 6 of 6)	intron (NM_018155, intron 6 of 6)	33254	NM_001104647	55186		NM_018155	ENSG00000114120	SLC25A36	HHF8|PNC2	solute carrier family 25 member 36	protein-coding
68697	chr14	90407951	90408280	+	0	NA	3' UTR (NM_001363670, exon 6 of 6)	3' UTR (NM_001363670, exon 6 of 6)	9865	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
127838	chr2	45009571	45010150	+	0	NA	promoter-TSS (NM_016932)	promoter-TSS (NM_016932)	-408	NM_016932	10736		NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
203197	chr6	167641451	167641550	+	0	NA	Intergenic	(ACC)n|Simple_repeat|Simple_repeat	37723	NR_117091	401286		NR_117091	ENSG00000272549	LINC02538	-	long intergenic non-protein coding RNA 2538	ncRNA
40461	chr11	64221271	64222080	+	0	NA	intron (NM_001382363, intron 12 of 13)	AluSg|SINE|Alu	4194	NM_001160393	83707		NM_031472	ENSG00000149743	TRPT1	-	tRNA phosphotransferase 1	protein-coding
133199	chr2	113116151	113116850	+	0	NA	Intergenic	Intergenic	-1471	NM_001318914	3557		NM_000577	ENSG00000136689	IL1RN	CRMO2|DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4	interleukin 1 receptor antagonist	protein-coding
88037	chr16	81426121	81426580	+	0	NA	Intergenic	AluSc8|SINE|Alu	-18820	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
161118	chr3	38259801	38260000	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5912	NM_004256	9390		NM_004256	ENSG00000172940	SLC22A13	OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3	solute carrier family 22 member 13	protein-coding
214520	chr7	150502321	150503180	+	0	NA	Intergenic	Intergenic	-12122	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
104021	chr17	80121371	80121700	+	0	NA	Intergenic	AluSz|SINE|Alu	19954	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
64426	chr14	24188021	24189830	+	0	NA	promoter-TSS (NR_051979)	promoter-TSS (NR_051979)	-7	NR_051979	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
183335	chr5	76734401	76734750	+	0	NA	3' UTR (NM_001992, exon 2 of 2)	3' UTR (NM_001992, exon 2 of 2)	18449	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
1237	chr1	2283101	2283900	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	55181	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
116981	chr19	18878151	18878580	+	0	NA	3' UTR (NM_001290265, exon 6 of 6)	3' UTR (NM_001290265, exon 6 of 6)	17793	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
233588	chrX	313251	313350	+	0	NA	intron (NM_012227, intron 5 of 9)	MLT1C|LTR|ERVL-MaLR	5519	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
228388	chr9	99125501	99125700	+	0	NA	intron (NM_001130916, intron 1 of 7)	Charlie29a|DNA|hAT-Charlie	20487	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
203222	chr6	168613671	168614030	+	0	NA	intron (NM_022138, intron 9 of 12)	TAR1|Satellite|telo	172666	NM_022138	64094		NM_022138	ENSG00000112562	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
5988	chr1	26966451	26967230	+	0	NA	Intergenic	L2|LINE|L2	-6372	NM_152365	126695		NM_152365	ENSG00000175707	KDF1	C1orf172|ECTD12	keratinocyte differentiation factor 1	protein-coding
37826	chr11	33160221	33160500	+	0	NA	intron (NM_001033505, intron 1 of 2)	intron (NM_001033505, intron 1 of 2)	1120	NM_001326	1479		NM_001326	ENSG00000176102	CSTF3	CSTF-77	cleavage stimulation factor subunit 3	protein-coding
20110	chr1	192477321	192477880	+	0	NA	Intergenic	Intergenic	-98173	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
210879	chr7	101156501	101156700	+	0	NA	exon (NM_001283, exon 2 of 5)	exon (NM_001283, exon 2 of 5)	2124	NM_001283	1174		NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A	adaptor related protein complex 1 subunit sigma 1	protein-coding
123673	chr19	54921101	54921300	+	0	NA	Intergenic	Intergenic	15052	NM_001242356	9437		NM_004829	ENSG00000189430	NCR1	CD335|LY94|NK-p46|NKP46	natural cytotoxicity triggering receptor 1	protein-coding
195418	chr6	36886921	36888250	+	0	NA	intron (NM_152734, intron 1 of 7)	L2c|LINE|L2	1633	NM_152734	221477		NM_152734	ENSG00000198663	C6orf89	BRAP|PS1TP5TP1	chromosome 6 open reading frame 89	protein-coding
225303	chr9	34576821	34577100	+	0	NA	intron (NM_001842, intron 1 of 8)	intron (NM_001842, intron 1 of 8)	8948	NR_024369	415056		NR_024369	ENSG00000237159	CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
197395	chr6	73505371	73505530	+	0	NA	3' UTR (NM_001123226, exon 13 of 13)	3' UTR (NM_001123226, exon 13 of 13)	12988	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
24769	chr1	248851071	248851900	+	0	NA	intron (NM_017865, intron 10 of 11)	L2a|LINE|L2	7600	NM_001350073	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
52118	chr12	54197371	54197830	+	0	NA	Intergenic	Intergenic	-8606	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
72788	chr15	40030271	40030730	+	0	NA	intron (NM_001013703, intron 35 of 38)	intron (NM_001013703, intron 35 of 38)	8681	NM_003134	6727		NM_003134	ENSG00000140319	SRP14	ALURBP	signal recognition particle 14	protein-coding
231996	chr9	133346771	133348880	+	0	NA	promoter-TSS (NM_000972).2	promoter-TSS (NM_000972).2	306	NM_133640	6837		NM_006752	ENSG00000148297	MED22	MED24|SRB6|SURF5|surf-5	mediator complex subunit 22	protein-coding
76813	chr15	77067851	77067950	+	0	NA	intron (NM_005724, intron 1 of 6)	MIRb|SINE|MIR	3209	NM_005724	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
81265	chr16	4626571	4627100	+	0	NA	intron (NM_001142291, intron 1 of 15)	intron (NM_001142291, intron 1 of 15)	2009	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
195685	chr6	38570901	38571100	+	0	NA	intron (NM_001172418, intron 5 of 10)	intron (NM_001172418, intron 5 of 10)	25067	NM_001172418	114781		NM_052893	ENSG00000183826	BTBD9	dJ322I12.1	BTB domain containing 9	protein-coding
67605	chr14	72535501	72536700	+	0	NA	intron (NM_001370288, intron 15 of 16)	intron (NM_001370288, intron 15 of 16)	19280	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
126684	chr2	30115501	30116000	+	0	NA	Intergenic	Intergenic	-31257	NM_001127401	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
221318	chr8	123040421	123040680	+	0	NA	intron (NM_024295, intron 1 of 7)	L2a|LINE|L2	1752	NM_024295	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
24538	chr1	244848621	244848880	+	0	NA	Intergenic	Intergenic	5467	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
191403	chr6	8392621	8392880	+	0	NA	Intergenic	L1MD3|LINE|L1	42795	NM_001370478	51000		NM_015948	ENSG00000124786	SLC35B3	C6orf196|CGI-19|PAPST2	solute carrier family 35 member B3	protein-coding
51386	chr12	51906201	51906400	+	0	NA	Intergenic	MIR|SINE|MIR	-1204	NM_000020	94		NM_000020	ENSG00000139567	ACVRL1	ACVRLK1|ALK-1|ALK1|HHT|HHT2|ORW2|SKR3|TSR-I	activin A receptor like type 1	protein-coding
234241	chrX	13080271	13080430	+	0	NA	Intergenic	L1MB5|LINE|L1	-35730	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
108740	chr18	77104371	77104630	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	28283	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
214377	chr7	149736221	149736700	+	0	NA	Intergenic	Intergenic	21449	NM_032534	84626		NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
133924	chr2	130374271	130375350	+	0	NA	3' UTR (NM_001142370, exon 11 of 11)	3' UTR (NM_001142370, exon 11 of 11)	18754	NM_014369	26469		NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase non-receptor type 18	protein-coding
52811	chr12	56821251	56821350	+	0	NA	Intergenic	Intergenic	57976	NM_003725	8630		NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid 17-beta dehydrogenase 6	protein-coding
35712	chr11	1938271	1938530	+	0	NA	intron (NM_001363561, intron 16 of 16)	intron (NM_001363561, intron 16 of 16)	-8932	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
150057	chr21	37387971	37388130	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	20493	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
81290	chr16	4677821	4678400	+	0	NA	intron (NM_001142291, intron 11 of 15)	AluJb|SINE|Alu	6792	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
176130	chr4	83106971	83107130	+	0	NA	intron (NM_016619, intron 2 of 4)	AluSq2|SINE|Alu	2839	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
188356	chr5	151749321	151749980	+	0	NA	intron (NM_004045, intron 2 of 3)	AluSx1|SINE|Alu	8981	NM_004045	475		NM_004045	ENSG00000177556	ATOX1	ATX1|HAH1	antioxidant 1 copper chaperone	protein-coding
219557	chr8	78524401	78524600	+	0	NA	intron (NM_181839, intron 1 of 2)	intron (NM_181839, intron 1 of 2)	8160	NM_181839	5569		NM_006823	ENSG00000171033	PKIA	PRKACN1	cAMP-dependent protein kinase inhibitor alpha	protein-coding
196086	chr6	42309701	42310150	+	0	NA	intron (NM_033502, intron 3 of 17)	AluJb|SINE|Alu	-92064	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
186545	chr5	138452221	138452680	+	0	NA	Intergenic	AluSz|SINE|Alu	-13029	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
123774	chr19	55108371	55108880	+	0	NA	intron (NM_017607, intron 3 of 21)	L1MB3|LINE|L1	9012	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
66452	chr14	61545201	61545550	+	0	NA	intron (NM_006255, intron 12 of 13)	L2c|LINE|L2	24819	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
94493	chr17	29288771	29288930	+	0	NA	intron (NM_020772, intron 1 of 3)	intron (NM_020772, intron 1 of 3)	5298	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
200450	chr6	135086121	135086630	+	0	NA	Intergenic	Intergenic	-31553	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
129669	chr2	70283721	70284030	+	0	NA	intron (NM_001317166, intron 3 of 3)	AluJb|SINE|Alu	9349	NM_001317167	6637		NM_003096	ENSG00000143977	SNRPG	SMG|Sm-G	small nuclear ribonucleoprotein polypeptide G	protein-coding
56121	chr12	110780151	110781000	+	0	NA	Intergenic	Intergenic	-37684	NM_002710	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
14670	chr1	145816251	145816550	+	0	NA	intron (NM_014455, intron 1 of 8)	intron (NM_014455, intron 1 of 8)	7695	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
142056	chr20	1894521	1895400	+	0	NA	promoter-TSS (NM_001040023)	promoter-TSS (NM_001040023)	218	NM_080792	140885		NM_080792	ENSG00000198053	SIRPA	BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP	signal regulatory protein alpha	protein-coding
231640	chr9	131603071	131603780	+	0	NA	intron (NM_005312, intron 11 of 23)	intron (NM_005312, intron 11 of 23)	47978	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
13049	chr1	111345951	111348530	+	0	NA	intron (NR_125338, intron 2 of 3)	intron (NR_125338, intron 2 of 3)	618	NM_181643	128344		NM_181643	ENSG00000173947	CIMAP3	C1orf88|PIFO|pitchfork	ciliary microtubule associated protein 3	protein-coding
127467	chr2	42220351	42220680	+	0	NA	intron (NM_019063, intron 1 of 22)	Tigger1|DNA|TcMar-Tigger	-50284	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
66234	chr14	61335841	61336450	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	14702	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
29155	chr10	68714821	68715180	+	0	NA	Intergenic	MER31A|LTR|ERV1	-6239	NM_001282960	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
131146	chr2	91514451	91514900	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	145274	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
73747	chr15	45376471	45377030	+	0	NA	exon (NM_001482, exon 2 of 9)	exon (NM_001482, exon 2 of 9)	1794	NM_001482	2628		NM_001482	ENSG00000171766	GATM	AGAT|AT|CCDS3|FRTS|FRTS1|RFS	glycine amidinotransferase	protein-coding
47844	chr12	6610971	6611130	+	0	NA	Intergenic	Intergenic	-3671	NM_001273	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
56828	chr12	120227151	120227530	+	0	NA	intron (NM_001080855, intron 1 of 11)	AluJr4|SINE|Alu	22823	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
95607	chr17	37523771	37524130	+	0	NA	intron (NM_001163544, intron 18 of 20).2	intron (NM_001163544, intron 18 of 20).2	34059	NM_007026	11072		NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
106662	chr18	23071071	23072280	+	0	NA	Intergenic	L2c|LINE|L2	-62889	NR_023359	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
41997	chr11	67390971	67393900	+	0	NA	promoter-TSS (NM_001243224)	promoter-TSS (NM_001243224)	449	NM_004584	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
72123	chr15	28957771	28957930	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	23846	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
126783	chr2	30262701	30263200	+	0	NA	Intergenic	L2b|LINE|L2	31416	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
129580	chr2	70058471	70058630	+	0	NA	intron (NR_033872, intron 5 of 10)	intron (NR_033872, intron 5 of 10)	28465	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
159275	chr3	12962451	12962550	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	5230	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
4141	chr1	19338271	19339100	+	0	NA	TTS (NM_004930)	TTS (NM_004930)	26359	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
205732	chr7	23492301	23493100	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	2312	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
236900	chrX	85734071	85734230	+	0	NA	Intergenic	L1HS|LINE|L1	-101630	NR_031710	100302171		NR_031710	ENSG00000283435	MIR1321	MIRN1321|hsa-mir-1321	microRNA 1321	ncRNA
203008	chr6	163415601	163416400	+	0	NA	intron (NM_206854, intron 1 of 6)	CpG	1282	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
52941	chr12	57441921	57442180	+	0	NA	intron (NM_005538, intron 1 of 1)	MLT1H2|LTR|ERVL-MaLR	7266	NM_005538	3626		NM_005538	ENSG00000175189	INHBC	IHBC	inhibin subunit beta C	protein-coding
113927	chr19	10720801	10721630	+	0	NA	intron (NM_001005362, intron 1 of 19)	AluSx|SINE|Alu	2811	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
234374	chrX	15761471	15762230	+	0	NA	intron (NR_160544, intron 5 of 11)	MER20|DNA|hAT-Charlie	23580	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
191291	chr6	6596551	6596850	+	0	NA	intron (NM_004271, intron 1 of 4)	intron (NM_004271, intron 1 of 4)	7980	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
148906	chr21	8809921	8810380	+	0	NA	Intergenic	ACRO1|Satellite|acro	-176849	NR_037421	100500862		NR_037421	ENSG00000275708	MIR3648-1	MIR3648|hsa-mir-3648-1	microRNA 3648-1	ncRNA
181555	chr5	43127471	43127830	+	0	NA	intron (NM_001330710, intron 3 of 5)	intron (NM_001330710, intron 3 of 5)	6085	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
130462	chr2	85541301	85541500	+	0	NA	intron (NM_005911, intron 3 of 8)	intron (NM_005911, intron 3 of 8)	2232	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
209855	chr7	90320871	90321400	+	0	NA	promoter-TSS (NM_001384237)	promoter-TSS (NM_001384237)	-152	NM_001384237	107986818		NM_001384237	ENSG00000283267	FAM237B	-	family with sequence similarity 237 member B	protein-coding
10669	chr1	71047171	71048150	+	0	NA	non-coding (NR_028293, exon 1 of 5)	non-coding (NR_028293, exon 1 of 5)	156	NM_198714	5733		NM_000957	ENSG00000050628	PTGER3	EP3|EP3-I|EP3-II|EP3-III|EP3-IV|EP3-VI|EP3e|PGE2-R|lnc003875	prostaglandin E receptor 3	protein-coding
1498	chr1	2766271	2767050	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	34208	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
194946	chr6	35262321	35263050	+	0	NA	intron (NM_003427, intron 1 of 13)	intron (NM_003427, intron 1 of 13)	2950	NM_001292032	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
76943	chr15	78092301	78092500	+	0	NA	promoter-TSS (NM_001101404)	promoter-TSS (NM_001101404)	-185	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
90329	chr17	1173101	1173580	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	6641	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
177522	chr4	118588271	118588800	+	0	NA	Intergenic	Intergenic	-3209	NR_109983	729218		NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
125806	chr2	24051251	24052080	+	0	NA	intron (NM_054033, intron 1 of 3)	L2c|LINE|L2	1924	NR_136536	2281		NM_004116	ENSG00000119782	FKBP1B	FKBP12.6|FKBP1L|OTK4|PKBP1L|PPIase	FKBP prolyl isomerase 1B	protein-coding
236650	chrX	75275551	75275930	+	0	NA	intron (NR_030774, intron 1 of 7)	AluJr4|SINE|Alu	1655	NM_145052	139596		NM_145052	ENSG00000094841	UPRT	FUR1|UPP	uracil phosphoribosyltransferase homolog	protein-coding
123145	chr19	52141071	52141230	+	0	NA	Intergenic	AluJr|SINE|Alu	-1212	NM_178523	90317		NM_178523	ENSG00000204611	ZNF616	-	zinc finger protein 616	protein-coding
29654	chr10	71888851	71889500	+	0	NA	Intergenic	CpG	-37924	NM_001042466	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
148656	chr21	6113501	6114300	+	0	NA	intron (NM_173354, intron 3 of 13).2	intron (NM_173354, intron 3 of 13).2	2769	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
136156	chr2	174337411	174337900	+	0	NA	3' UTR (NM_001145250, exon 2 of 2)	3' UTR (NM_001145250, exon 2 of 2)	2701	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
36780	chr11	9445301	9445500	+	0	NA	3' UTR (NM_006391, exon 25 of 25)	3' UTR (NM_006391, exon 25 of 25)	15298	NR_036539	644656		NR_036539	ENSG00000268403	LOC644656	-	uncharacterized LOC644656	ncRNA
144178	chr20	34106771	34107130	+	0	NA	intron (NM_003908, intron 1 of 8)	AluYf1|SINE|Alu	5293	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
219682	chr8	80534421	80534700	+	0	NA	Intergenic	Intergenic	48334	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
156402	chr22	41154301	41154500	+	0	NA	intron (NM_001362843, intron 15 of 29)	AluSx3|SINE|Alu	43101	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
100874	chr17	64325771	64325930	+	0	NA	intron (NM_000442, intron 15 of 15)	intron (NM_000442, intron 15 of 15)	-62590	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
126061	chr2	25672801	25674780	+	0	NA	promoter-TSS (NM_001351387)	promoter-TSS (NM_001351387)	-116	NM_001256304	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
175766	chr4	77779751	77780230	+	0	NA	intron (NM_001365006, intron 1 of 11)	intron (NM_001365006, intron 1 of 11)	39074	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
137746	chr2	197868321	197868580	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	63857	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
170899	chr3	193853671	193853830	+	0	NA	Intergenic	Intergenic	-9741	NR_146718	105374285		NR_146718		LINC02038	-	long intergenic non-protein coding RNA 2038	ncRNA
209961	chr7	92684051	92684480	+	0	NA	intron (NM_001145306, intron 4 of 7)	intron (NM_001145306, intron 4 of 7)	-93875	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
28568	chr10	50671951	50672880	+	0	NA	Intergenic	MER101|LTR|ERV1	47464	NR_126411	104355295		NR_126411		SGMS1-AS1	-	SGMS1 antisense RNA 1	ncRNA
66555	chr14	62116901	62117600	+	0	NA	promoter-TSS (NR_015358)	promoter-TSS (NR_015358)	-107	NR_015358	646113		NM_001039785		LINC00643	-	long intergenic non-protein coding RNA 643	ncRNA
91757	chr17	6833171	6833330	+	0	NA	Intergenic	HAL1ME|LINE|L1	-1521	NM_053285	83659		NM_053285	ENSG00000167858	TEKT1	-	tektin 1	protein-coding
52778	chr12	56689851	56689950	+	0	NA	Intergenic	Intergenic	-1492	NM_001282604	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
83353	chr16	25055421	25056230	+	0	NA	Intergenic	Intergenic	-11062	NR_135196	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
82833	chr16	21498501	21499180	+	0	NA	intron (NR_027155, intron 1 of 28)	AluJb|SINE|Alu	-2686	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
47914	chr12	6768501	6768780	+	0	NA	intron (NM_001330333, intron 1 of 4)	intron (NM_001330333, intron 1 of 4)	2277	NM_001330333	5763		NM_002824	ENSG00000159335	PTMS	ParaT	parathymosin	protein-coding
81805	chr16	11546171	11546900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-19288	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
223995	chr9	2125771	2126280	+	0	NA	intron (NM_003070, intron 27 of 33)	L2a|LINE|L2	-31637	NM_001289398	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
61387	chr13	51518821	51519080	+	0	NA	Intergenic	Intergenic	-33639	NR_039852	100616423		NR_039852	ENSG00000266611	MIR4703	-	microRNA 4703	ncRNA
81491	chr16	8943401	8943600	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	6154	NR_135826	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
85499	chr16	50753451	50753750	+	0	NA	intron (NR_166071, intron 4 of 16)	MamTip3|DNA|hAT-Tip100	11185	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
202320	chr6	157310431	157311800	+	0	NA	intron (NM_018452, intron 3 of 3)	intron (NM_018452, intron 3 of 3)	12404	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
7987	chr1	37932851	37932950	+	0	NA	intron (NM_001365824, intron 7 of 24)	MamRep1879|DNA|hAT-Tip100?	-1109	NR_158631	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
2343	chr1	9234201	9235750	+	0	NA	5' UTR (NM_004285, exon 1 of 5)	5' UTR (NM_004285, exon 1 of 5)	201	NM_004285	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
130575	chr2	85804451	85804850	+	0	NA	Intergenic	Intergenic	-10480	NR_038888	284950		NR_038888		LOC284950	-	uncharacterized LOC284950	ncRNA
20770	chr1	201011371	201011930	+	0	NA	intron (NM_017596, intron 1 of 33)	MIR3|SINE|MIR	12064	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
194690	chr6	33687651	33688200	+	0	NA	intron (NM_002224, intron 46 of 57)	(GGCTT)n|Simple_repeat|Simple_repeat	-10203	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
12244	chr1	100433001	100433450	+	0	NA	intron (NM_001319210, intron 5 of 16)	L3|LINE|CR1	80719	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
164799	chr3	69410201	69410580	+	0	NA	Intergenic	(GAGTGT)n|Simple_repeat|Simple_repeat	-24302	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
1008	chr1	1853771	1854130	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	37137	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
67104	chr14	68362851	68363150	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	265787	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
78899	chr15	101121571	101121980	+	0	NA	Intergenic	Intergenic	130273	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
204540	chr7	4958771	4959450	+	0	NA	promoter-TSS (NR_072989)	promoter-TSS (NR_072989)	77	NR_072989	221938		NM_198403	ENSG00000136297	MMD2	PAQR10	monocyte to macrophage differentiation associated 2	protein-coding
35172	chr11	775001	775900	+	0	NA	intron (NM_001318824, intron 1 of 6)	intron (NM_001318824, intron 1 of 6)	2037	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
114041	chr19	10958201	10958400	+	0	NA	Intergenic	AluSc|SINE|Alu	-2730	NM_001374457	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
28739	chr10	61965121	61965380	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	63551	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
149874	chr21	35525251	35525680	+	0	NA	intron (NR_073512, intron 1 of 2)	L2c|LINE|L2	55299	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
71376	chr14	105501851	105502550	+	0	NA	Intergenic	AluJb|SINE|Alu	10951	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
74341	chr15	58553651	58553750	+	0	NA	intron (NM_000236, intron 6 of 8)	intron (NM_000236, intron 6 of 8)	-54965	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
190308	chr5	179604151	179604250	+	0	NA	promoter-TSS (NR_110560).2	promoter-TSS (NR_110560).2	-459	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
220413	chr8	100272771	100273380	+	0	NA	intron (NM_183419, intron 3 of 9)	AluJr|SINE|Alu	29118	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
174397	chr4	39181671	39183630	+	0	NA	intron (NM_001317924, intron 1 of 35)	intron (NM_001317924, intron 1 of 35)	121	NM_025132	57728		NM_025132	ENSG00000157796	WDR19	ATD5|CED4|CFAP66|DYF-2|FAP66|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SPGF72|SRTD5	WD repeat domain 19	protein-coding
38152	chr11	35618021	35618400	+	0	NA	promoter-TSS (NM_014344)	promoter-TSS (NM_014344)	-250	NM_014344	24147		NM_014344	ENSG00000179431	FJX1	-	four-jointed box kinase 1	protein-coding
54427	chr12	91381451	91381550	+	0	NA	Intergenic	Intergenic	-198683	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
73825	chr15	49045751	49047150	+	0	NA	promoter-TSS (NM_014701)	promoter-TSS (NM_014701)	-4	NM_001193489	9728		NM_014701	ENSG00000138593	SECISBP2L	SBP2L|SLAN	SECIS binding protein 2 like	protein-coding
172895	chr4	3477771	3477930	+	0	NA	intron (NM_001301071, intron 4 of 9)	(GGTGG)n|Simple_repeat|Simple_repeat	-6694	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
84067	chr16	29592951	29593580	+	0	NA	intron (NR_135305, intron 1 of 13)	intron (NR_135305, intron 1 of 13)	1827	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
1561	chr1	3496871	3497030	+	0	NA	intron (NM_001409, intron 28 of 36)	intron (NM_001409, intron 28 of 36)	42285	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
183881	chr5	87283801	87284650	+	0	NA	intron (NM_022650, intron 1 of 24)	intron (NM_022650, intron 1 of 24)	15288	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
40260	chr11	63764351	63765200	+	0	NA	intron (NM_001144936, intron 3 of 4)	intron (NM_001144936, intron 3 of 4)	4000	NM_001144936	65998		NM_023941	ENSG00000188070	ZFTA	C11orf95	zinc finger translocation associated	protein-coding
8945	chr1	44220571	44220730	+	0	NA	TTS (NM_001301701)	TTS (NM_001301701)	7179	NM_019100	55929		NM_019100	ENSG00000178028	DMAP1	DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4	DNA methyltransferase 1 associated protein 1	protein-coding
143635	chr20	31835751	31836380	+	0	NA	Intergenic	Intergenic	9539	NM_004118	2307		NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
29333	chr10	69408411	69409400	+	0	NA	intron (NM_001057, intron 3 of 4)	CpG	8013	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
132579	chr2	106509271	106509430	+	0	NA	3' UTR (NM_001349727, exon 6 of 6)	3' UTR (NM_001349727, exon 6 of 6)	21986	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
213242	chr7	134032051	134032560	+	0	NA	intron (NM_021807, intron 17 of 17)	intron (NM_021807, intron 17 of 17)	-95035	NM_001365700	136332		NM_144648	ENSG00000155530	LRGUK	CFAP246	leucine rich repeats and guanylate kinase domain containing	protein-coding
202577	chr6	158686721	158687880	+	0	NA	intron (NM_001318745, intron 3 of 14)	MLT1F|LTR|ERVL-MaLR	23897	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
58696	chr12	132556151	132557200	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-25322	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
167718	chr3	130950021	130950380	+	0	NA	intron (NM_001199181, intron 7 of 26)	intron (NM_001199181, intron 7 of 26)	55650	NM_014382	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
14903	chr1	147081051	147081150	+	0	NA	Intergenic	Intergenic	3656	NR_121645	101447996		NR_121645	ENSG00000286172	RNVU1-8	RNU1-145|vU1.8	RNA, variant U1 small nuclear 8	snRNA
40295	chr11	63865071	63865530	+	0	NA	intron (NM_004954, intron 1 of 16)	AluJb|SINE|Alu	-23237	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
88944	chr16	87838721	87839400	+	0	NA	intron (NM_003486, intron 5 of 9)	intron (NM_003486, intron 5 of 9)	-4400	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
118720	chr19	38231171	38231530	+	0	NA	Intergenic	L2a|LINE|L2	-1636	NM_001135156	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
179385	chr4	183633701	183633980	+	0	NA	Intergenic	L1ME4b|LINE|L1	25345	NM_152682	201965		NM_152682	ENSG00000182552	RWDD4	FAM28A|RWDD4A	RWD domain containing 4	protein-coding
185121	chr5	119286301	119286850	+	0	NA	intron (NM_001077654, intron 1 of 1)	AluY|SINE|Alu	17816	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
204273	chr7	2642321	2642600	+	0	NA	intron (NM_025250, intron 1 of 13)	AluSx|SINE|Alu	10474	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
670	chr1	1373221	1373750	+	0	NA	TTS (NM_001127229)	TTS (NM_001127229)	1722	NM_017900	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
39468	chr11	60984871	60985180	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	13345	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
190971	chr6	2967751	2968050	+	0	NA	intron (NM_001297700, intron 1 of 6)	L1PREC2|LINE|L1	2823	NM_001374516	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
124622	chr2	1222821	1223100	+	0	NA	intron (NM_018968, intron 9 of 16)	intron (NM_018968, intron 9 of 16)	-190501	NM_000547	7173		NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
39100	chr11	48042621	48043150	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-53897	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
231892	chr9	133056171	133056530	+	0	NA	intron (NM_012087, intron 9 of 10)	intron (NM_012087, intron 9 of 10)	4354	NR_106937	102465528		NR_106937	ENSG00000273932	MIR6877	hsa-mir-6877	microRNA 6877	ncRNA
59263	chr13	24130421	24130700	+	0	NA	intron (NM_001286792, intron 3 of 14)	intron (NM_001286792, intron 3 of 14)	-30160	NM_153023	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
155823	chr22	39349151	39350480	+	0	NA	promoter-TSS (NM_004711)	promoter-TSS (NM_004711)	-134	NM_145731	9145		NM_004711	ENSG00000100321	SYNGR1	-	synaptogyrin 1	protein-coding
197672	chr6	85465501	85466100	+	0	NA	intron (NM_002526, intron 1 of 8)	intron (NM_002526, intron 1 of 8)	15717	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
80967	chr16	3880401	3881830	+	0	NA	promoter-TSS (NM_001079846)	promoter-TSS (NM_001079846)	-402	NM_004380	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
42338	chr11	68502521	68502780	+	0	NA	intron (NM_001352362, intron 2 of 24)	L2b|LINE|L2	41898	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
43858	chr11	88303051	88303780	+	0	NA	intron (NM_001814, intron 4 of 6)	MER21A|LTR|ERVL	34321	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
169615	chr3	171256801	171257750	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-150516	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
63094	chr13	113220921	113221580	+	0	NA	intron (NM_001354942, intron 3 of 19)	intron (NM_001354942, intron 3 of 19)	11637	NM_001008895	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
156174	chr22	40221671	40222030	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	43925	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
60140	chr13	39688621	39689100	+	0	NA	intron (NM_001145079, intron 10 of 18)	intron (NM_001145079, intron 10 of 18)	-24725	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
125587	chr2	16659001	16659200	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	6734	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
169488	chr3	169762771	169763530	+	0	NA	Intergenic	Intergenic	1910	NR_001566	7012		NR_001566	ENSG00000277925	TERC	DKCA1|PFBMFT2|SCARNA19|TER|TR|TRC3|hTR	telomerase RNA component	ncRNA
151755	chr22	17843651	17843750	+	0	NA	intron (NM_015241, intron 19 of 31)	intron (NM_015241, intron 19 of 31)	63186	NM_001136004	57553		NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
10003	chr1	55195771	55196400	+	0	NA	intron (NM_015306, intron 1 of 67)	L2a|LINE|L2	19279	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
43151	chr11	75324951	75325250	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	10086	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
105051	chr17	82071721	82072180	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6146	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
16972	chr1	155953571	155953730	+	0	NA	intron (NM_004723, intron 14 of 21)	AluSx1|SINE|Alu	-2314	NR_106796	102465442		NR_106796	ENSG00000277817	MIR6738	hsa-mir-6738	microRNA 6738	ncRNA
55167	chr12	100188921	100189180	+	0	NA	promoter-TSS (NR_031728)	promoter-TSS (NR_031728)	-834	NR_031728	100302217		NR_031728	ENSG00000221476	MIR1827	MIRN1827|hsa-mir-1827	microRNA 1827	ncRNA
215550	chr7	158796621	158796880	+	0	NA	intron (NM_020728, intron 3 of 21)	intron (NM_020728, intron 3 of 21)	32759	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
175798	chr4	77808271	77809200	+	0	NA	intron (NM_001365006, intron 1 of 11)	intron (NM_001365006, intron 1 of 11)	10329	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
83634	chr16	28290021	28290480	+	0	NA	Intergenic	L2|LINE|L2	-2275	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
16301	chr1	154173651	154173750	+	0	NA	intron (NM_001278188, intron 1 of 6)	intron (NM_001278188, intron 1 of 6)	4504	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
153183	chr22	23840721	23840980	+	0	NA	intron (NR_003082, intron 4 of 4)	L1MB3|LINE|L1	-1844	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
110076	chr19	1505521	1506050	+	0	NA	3' UTR (NM_213604, exon 12 of 12)	3' UTR (NM_213604, exon 12 of 12)	7234	NM_001367197	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
31336	chr10	92965201	92965400	+	0	NA	intron (NM_001319200, intron 13 of 17)	MER5A|DNA|hAT-Charlie	-95498	NM_183374	340665		NM_183374	ENSG00000187553	CYP26C1	FFDD4	cytochrome P450 family 26 subfamily C member 1	protein-coding
156620	chr22	41586851	41587350	+	0	NA	intron (NM_002676, intron 1 of 7)	AluY|SINE|Alu	2740	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
89692	chr16	89390771	89391930	+	0	NA	intron (NR_045839, intron 2 of 9)	MER21B|LTR|ERVL	-39568	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
155241	chr22	37937021	37937280	+	0	NA	exon (NM_033386, exon 14 of 16)	exon (NM_033386, exon 14 of 16)	16451	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
43410	chr11	77191821	77192280	+	0	NA	intron (NM_001369365, intron 31 of 49)	intron (NM_001369365, intron 31 of 49)	63804	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
78525	chr15	92948251	92948350	+	0	NA	intron (NM_001042572, intron 12 of 12)	intron (NM_001042572, intron 12 of 12)	43901	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
75132	chr15	64581201	64581600	+	0	NA	intron (NM_015042, intron 2 of 9)	L1M4|LINE|L1	120822	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
55369	chr12	104291251	104291750	+	0	NA	intron (NM_001261446, intron 2 of 13)	AluSg4|SINE|Alu	4468	NM_182743	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
51361	chr12	51813001	51813380	+	0	NA	TTS (NM_001177984)	TTS (NM_001177984)	18727	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
30865	chr10	86709271	86709430	+	0	NA	intron (NM_001368066, intron 9 of 14)	intron (NM_001368066, intron 9 of 14)	40786	NM_001080116	11155		NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
220295	chr8	98052101	98052300	+	0	NA	Intergenic	SVA_B|Retroposon|SVA	-6655	NM_000989	6156		NM_000989	ENSG00000156482	RPL30	L30|eL30	ribosomal protein L30	protein-coding
3983	chr1	18905851	18906200	+	0	NA	3' UTR (NM_001136265, exon 9 of 9)	3' UTR (NM_001136265, exon 9 of 9)	-3226	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
127929	chr2	46464271	46464800	+	0	NA	Intergenic	Intergenic	-15030	NM_001145051	388946		NM_001145051	ENSG00000284701	TMEM247	-	transmembrane protein 247	protein-coding
223482	chr8	144056671	144057180	+	0	NA	TTS (NR_106905)	TTS (NR_106905)	455	NR_106905	102465509		NR_106905	ENSG00000277888	MIR6846	hsa-mir-6846	microRNA 6846	ncRNA
118173	chr19	35037751	35038300	+	0	NA	TTS (NM_199037)	TTS (NM_199037)	-2481	NM_182983	3249		NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
49664	chr12	29160151	29160650	+	0	NA	intron (NM_001271783, intron 1 of 11)	intron (NM_001271783, intron 1 of 11)	11122	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
210024	chr7	94002651	94002950	+	0	NA	intron (NM_001317739, intron 1 of 4)	intron (NM_001317739, intron 1 of 4)	1555	NR_133909	10282		NM_005868	ENSG00000105829	BET1	HBET1|MDRP	Bet1 golgi vesicular membrane trafficking protein	protein-coding
57049	chr12	120856021	120856500	+	0	NA	intron (NM_139015, intron 1 of 10)	MLT1L|LTR|ERVL-MaLR	48098	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
44601	chr11	108496401	108496800	+	0	NA	intron (NM_153705, intron 1 of 7)	intron (NM_153705, intron 1 of 7)	1784	NM_001363502	143888		NM_153705	ENSG00000178202	POGLUT3	KDELC2	protein O-glucosyltransferase 3	protein-coding
63968	chr14	22160071	22160230	+	0	NA	Intergenic	Intergenic	272603	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
94999	chr17	32359121	32359550	+	0	NA	intron (NM_001098507, intron 3 of 11)	AluSg|SINE|Alu	9178	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
166303	chr3	112605271	112605430	+	0	NA	3' UTR (NM_199512, exon 8 of 8)	3' UTR (NM_199512, exon 8 of 8)	35793	NM_199512	151887		NM_178274	ENSG00000091986	CCDC80	CL2|DRO1|LINC01279|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
145240	chr20	38931501	38931700	+	0	NA	intron (NM_030919, intron 1 of 3)	intron (NM_030919, intron 1 of 3)	5183	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
138121	chr2	202289901	202290580	+	0	NA	intron (NM_015934, intron 6 of 14)	L1MB4|LINE|L1	-1077	NR_003694	100113392		NR_003694	ENSG00000271852	SNORD11B	-	small nucleolar RNA, C/D box 11B	snoRNA
146621	chr20	50171601	50173150	+	0	NA	promoter-TSS (NR_109943)	promoter-TSS (NR_109943)	-195	NR_109943	101927541		NR_109943	ENSG00000231742	LINC01273	-	long intergenic non-protein coding RNA 1273	ncRNA
69032	chr14	91829601	91830000	+	0	NA	intron (NM_001128596, intron 1 of 11)	L1MEd|LINE|L1	6655	NM_152332	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
30890	chr10	86965051	86965350	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-3282	NM_006829	10974		NM_006829	ENSG00000148671	ADIRF	AFRO|APM2|C10orf116|apM-2	adipogenesis regulatory factor	protein-coding
21231	chr1	204194851	204195380	+	0	NA	intron (NM_002256, intron 1 of 2)	intron (NM_002256, intron 1 of 2)	1376	NM_002256	3814		NM_002256	ENSG00000170498	KISS1	HH13|KiSS-1	KiSS-1 metastasis suppressor	protein-coding
25239	chr10	6028051	6028350	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	34167	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
106812	chr18	23977921	23978600	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-14627	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
137779	chr2	199464451	199464800	+	0	NA	intron (NM_015265, intron 1 of 11)	CpG	483	NM_001172517	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
110227	chr19	1762951	1763250	+	0	NA	intron (NM_001080488, intron 1 of 1)	AluSx|SINE|Alu	9594	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
112045	chr19	5135151	5135450	+	0	NA	intron (NM_015015, intron 14 of 22)	intron (NM_015015, intron 14 of 22)	166187	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
143552	chr20	31601601	31601800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3589	NM_002165	3397		NM_002165	ENSG00000125968	ID1	ID|bHLHb24	inhibitor of DNA binding 1	protein-coding
207777	chr7	50206201	50207330	+	0	NA	Intergenic	L2a|LINE|L2	-97299	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
8329	chr1	40168851	40168950	+	0	NA	intron (NM_012421, intron 1 of 7)	AluSq2|SINE|Alu	7513	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
87176	chr16	69345451	69346280	+	0	NA	intron (NM_144676, intron 3 of 3)	AluJb|SINE|Alu	5921	NM_144676	146456		NM_144676	ENSG00000157315	TMED6	PRO34237|SPLL9146|p24g5	transmembrane p24 trafficking protein 6	protein-coding
116458	chr19	18074301	18074700	+	0	NA	intron (NM_153701, intron 7 of 9)	AluSz|SINE|Alu	12434	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
48558	chr12	10241951	10242050	+	0	NA	intron (NM_001351060, intron 2 of 8)	intron (NM_001351060, intron 2 of 8)	3039	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
233872	chrX	1556201	1556400	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-19115	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
82180	chr16	14933321	14933830	+	0	NA	intron (NR_146231, intron 29 of 38)	intron (NR_146231, intron 29 of 38)	2755	NR_107060	102465908		NR_107060	ENSG00000277698	MIR6770-2	hsa-mir-6770-2	microRNA 6770-2	ncRNA
183387	chr5	77641101	77641300	+	0	NA	Intergenic	Intergenic	-2487	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
194979	chr6	35348051	35349550	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	6242	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
110343	chr19	1878371	1879580	+	0	NA	intron (NM_001130111, intron 3 of 4)	intron (NM_001130111, intron 3 of 4)	6521	NM_001130111	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
159524	chr3	14427071	14427480	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	24669	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
176252	chr4	86947301	86947780	+	0	NA	intron (NM_001166693, intron 1 of 20)	intron (NM_001166693, intron 1 of 20)	12538	NM_001166693	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
90099	chr16	90045321	90045730	+	0	NA	TTS (NM_001481)	TTS (NM_001481)	2100	NR_027335	100130015		NR_027335	ENSG00000290738	URAHP	URAH	urate (hydroxyiso-) hydrolase, pseudogene	pseudo
92651	chr17	10604901	10605100	+	0	NA	intron (NR_125367, intron 6 of 10)	intron (NR_125367, intron 6 of 10)	52309	NM_002470	4621		NM_002470	ENSG00000109063	MYH3	CPSFS1A|CPSFS1B|CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE	myosin heavy chain 3	protein-coding
25988	chr10	11986551	11986950	+	0	NA	intron (NM_080599, intron 8 of 21)	intron (NM_080599, intron 8 of 21)	56059	NM_015542	26019		NM_015542	ENSG00000151461	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense mediated mRNA decay	protein-coding
129819	chr2	72144271	72144430	+	0	NA	intron (NM_019885, intron 1 of 5)	CpG	3512	NM_001277742	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
227022	chr9	83919771	83920030	+	0	NA	intron (NM_001271928, intron 1 of 15)	intron (NM_001271928, intron 1 of 15)	1532	NM_001354070	55582		NM_017576	ENSG00000165115	KIF27	-	kinesin family member 27	protein-coding
203464	chr7	468951	469450	+	0	NA	Intergenic	Intergenic	-37399	NR_165236	112267991		NR_165236		LOC112267991	-	uncharacterized LOC112267991	ncRNA
37763	chr11	32090701	32092180	+	0	NA	exon (NM_002901, exon 1 of 6)	exon (NM_002901, exon 1 of 6)	366	NM_002901	5954		NM_002901	ENSG00000049449	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1	protein-coding
162518	chr3	48589301	48589900	+	0	NA	exon (NM_000094, exon 17 of 119)	exon (NM_000094, exon 17 of 119)	5729	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
63324	chr13	114008121	114009250	+	0	NA	intron (NM_001320822, intron 17 of 23).2	CpG	-34609	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
5031	chr1	24510021	24510750	+	0	NA	intron (NM_001251978, intron 1 of 4)	Tigger1|DNA|TcMar-Tigger	2791	NM_001251978	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
110049	chr19	1474801	1475400	+	0	NA	exon (NM_152482, exon 3 of 3)	exon (NM_152482, exon 3 of 3)	4115	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
20250	chr1	193462621	193463150	+	0	NA	Intergenic	Intergenic	158140	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
227944	chr9	94584471	94584880	+	0	NA	intron (NM_003837, intron 2 of 6)	intron (NM_003837, intron 2 of 6)	9149	NM_003837	8789		NM_003837	ENSG00000130957	FBP2	CORLK	fructose-bisphosphatase 2	protein-coding
195637	chr6	37857651	37857950	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	38073	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
65888	chr14	55164401	55164600	+	0	NA	intron (NM_014750, intron 12 of 18)	L1MB7|LINE|L1	27085	NM_001146015	9787		NM_014750	ENSG00000126787	DLGAP5	DLG7|HURP	DLG associated protein 5	protein-coding
225236	chr9	34216401	34217330	+	0	NA	intron (NR_033243, intron 2 of 7)	AluJb|SINE|Alu	37822	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
160791	chr3	32960371	32960900	+	0	NA	Intergenic	Intergenic	8991	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
79081	chr16	171701	172180	+	0	NA	promoter-TSS (NM_000517)	promoter-TSS (NM_000517)	-936	NM_000517	3040		NM_000517	ENSG00000188536	HBA2	ECYT7|HBA-T2|HBH	hemoglobin subunit alpha 2	protein-coding
124400	chr19	58404751	58404850	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3849	NM_173548	201514		NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
31907	chr10	100377851	100378150	+	0	NA	intron (NR_026762, intron 1 of 2)	AluJo|SINE|Alu	4424	NR_026762	90271		NR_026762	ENSG00000235823	OLMALINC	C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS	oligodendrocyte maturation-associated long intergenic non-coding RNA	ncRNA
101428	chr17	67411171	67411530	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	34069	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
91277	chr17	4108451	4108750	+	0	NA	intron (NM_015113, intron 6 of 54)	L1MC4|LINE|L1	34430	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
108625	chr18	76380951	76381050	+	0	NA	intron (NM_014643, intron 3 of 6)	intron (NM_014643, intron 3 of 6)	-110652	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
52258	chr12	54427601	54428000	+	0	NA	intron (NR_120488, intron 1 of 2)	intron (NR_120488, intron 1 of 2)	8015	NR_120488	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
10178	chr1	61332451	61332550	+	0	NA	intron (NM_001145512, intron 4 of 11)	intron (NM_001145512, intron 4 of 11)	-78982	NR_104180	645030		NR_104180	ENSG00000237853	NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
45578	chr11	118875151	118875550	+	0	NA	Intergenic	Intergenic	-8542	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
183014	chr5	72941301	72941530	+	0	NA	Intergenic	AluY|SINE|Alu	-14626	NM_138782	115548		NM_138782	ENSG00000157107	FCHO2	-	FCH and mu domain containing endocytic adaptor 2	protein-coding
221975	chr8	129988171	129988600	+	0	NA	intron (NM_001353269, intron 1 of 10)	MER48|LTR|ERV1	20068	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
61189	chr13	49253401	49253630	+	0	NA	intron (NM_030911, intron 2 of 9)	MIR|SINE|MIR	5590	NR_036439	81602		NM_030911	ENSG00000102543	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
175330	chr4	68347801	68348180	+	0	NA	intron (NM_001031732, intron 1 of 16)	intron (NM_001031732, intron 1 of 16)	2100	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
65181	chr14	49617271	49617500	+	0	NA	Intergenic	AluJb|SINE|Alu	3241	NM_001001	6166		NM_001001	ENSG00000165502	RPL36AL	RPL36A|RPL36AP42|RPL36A_18_1363	ribosomal protein L36a like	protein-coding
110192	chr19	1677651	1678150	+	0	NA	Intergenic	Intergenic	-25285	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
150112	chr21	37457921	37458900	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	38111	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
217641	chr8	30067971	30068680	+	0	NA	intron (NM_016127, intron 3 of 5)	MER1A|DNA|hAT-Charlie	14739	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
174891	chr4	48905501	48905700	+	0	NA	intron (NM_001286773, intron 1 of 5)	intron (NM_001286773, intron 1 of 5)	1174	NM_001014446	132299		NM_152398	ENSG00000145247	OCIAD2	-	OCIA domain containing 2	protein-coding
189724	chr5	176537701	176538750	+	0	NA	promoter-TSS (NM_014901)	promoter-TSS (NM_014901)	-823	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
7201	chr1	32282001	32282200	+	0	NA	intron (NM_001042771, intron 12 of 12)	intron (NM_001042771, intron 12 of 12)	7989	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
10871	chr1	78004121	78005200	+	0	NA	promoter-TSS (NM_007034)	promoter-TSS (NM_007034)	-168	NM_001317103	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
160460	chr3	30347601	30347900	+	0	NA	Intergenic	Intergenic	-171118	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
144062	chr20	33673051	33673150	+	0	NA	intron (NM_031232, intron 1 of 11)	intron (NM_031232, intron 1 of 11)	1328	NM_031231	63941		NM_031231	ENSG00000125967	NECAB3	APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5	N-terminal EF-hand calcium binding protein 3	protein-coding
231725	chr9	131763371	131763630	+	0	NA	Intergenic	Intergenic	-23424	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
102453	chr17	75701171	75701530	+	0	NA	intron (NR_126036, intron 5 of 9)	intron (NR_126036, intron 5 of 9)	-20109	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
24618	chr1	246564871	246565100	+	0	NA	intron (NM_022366, intron 1 of 7)	intron (NM_022366, intron 1 of 7)	1276	NM_022366	64216		NM_022366	ENSG00000162851	TFB2M	Hkp1|h-mtTFB|h-mtTFB2|hTFB2M|mtTFB2	transcription factor B2, mitochondrial	protein-coding
23868	chr1	234815371	234815730	+	0	NA	Intergenic	Intergenic	-55494	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
134326	chr2	136080101	136080330	+	0	NA	Intergenic	Intergenic	36020	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
210942	chr7	101282051	101282150	+	0	NA	Intergenic	L2a|LINE|L2	-17513	NR_146480	101927721		NR_146480	ENSG00000232301	LNCPRESS1	-	lncRNA p53 regulated and ESC associated 1	ncRNA
90127	chr16	90122051	90122580	+	0	NA	intron (NR_126161, intron 3 of 3)	(AGGGTT)n|Simple_repeat|Simple_repeat	20051	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
40486	chr11	64249301	64250280	+	0	NA	Intergenic	Intergenic	-1740	NM_000932	5331		NM_000932	ENSG00000149782	PLCB3	SMDCD	phospholipase C beta 3	protein-coding
222299	chr8	133478101	133479080	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	93297	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
181632	chr5	49547351	49547450	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	893888	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
11228	chr1	88883501	88884400	+	0	NA	intron (NM_001514, intron 2 of 6)	Cheshire|DNA|hAT-Charlie	7617	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
32453	chr10	102635301	102636100	+	0	NA	Intergenic	L2c|LINE|L2	-8779	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
23161	chr1	226734251	226734350	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	4875	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
235853	chrX	50191551	50191650	+	0	NA	intron (NM_003886, intron 5 of 5)	intron (NM_003886, intron 5 of 5)	8772	NM_139289	8852		NM_003886	ENSG00000147081	AKAP4	AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82	A-kinase anchoring protein 4	protein-coding
73599	chr15	44548251	44548580	+	0	NA	intron (NM_001284336, intron 2 of 5)	AluSq2|SINE|Alu	11268	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
132546	chr2	106189321	106189580	+	0	NA	intron (NR_165308, intron 1 of 14)	MLT1I|LTR|ERVL-MaLR	4851	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
175284	chr4	67542171	67543400	+	0	NA	intron (NR_155754, intron 2 of 18)	intron (NR_155754, intron 2 of 18)	2718	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
29215	chr10	68993901	68994100	+	0	NA	intron (NM_015634, intron 1 of 6)	intron (NM_015634, intron 1 of 6)	5197	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
145573	chr20	44485101	44485300	+	0	NA	intron (NM_001039199, intron 3 of 4)	intron (NM_001039199, intron 3 of 4)	9326	NM_001261839	79183		NM_024331	ENSG00000124120	TTPAL	C20orf121	alpha tocopherol transfer protein like	protein-coding
226103	chr9	62843851	62844150	+	0	NA	non-coding (NR_024496, exon 2 of 2)	non-coding (NR_024496, exon 2 of 2)	3355	NR_135010	442421		NR_024496		PTGER4P2-CDK2AP2P2	-	PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene	pseudo
189623	chr5	176024001	176024600	+	0	NA	Intergenic	L1M4b|LINE|L1	37755	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
200826	chr6	137975051	137976430	+	0	NA	Intergenic	Intergenic	-29940	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
166009	chr3	108215971	108216200	+	0	NA	intron (NM_018010, intron 3 of 10)	L1MA6|LINE|L1	6339	NM_018010	55081		NM_018010	ENSG00000114446	IFT57	ESRRBL1|HIPPI|MHS4R2|OFD18	intraflagellar transport 57	protein-coding
127194	chr2	38535171	38535330	+	0	NA	Intergenic	Intergenic	-19510	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
193271	chr6	29970851	29971150	+	0	NA	Intergenic	Intergenic	-4115	NR_028032	10255		NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9	ncRNA
9757	chr1	53327101	53327500	+	0	NA	promoter-TSS (NR_131923)	promoter-TSS (NR_131923)	770	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
172722	chr4	2808751	2809780	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	-3026	NM_001145855	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
103892	chr17	79798401	79798930	+	0	NA	Intergenic	CpG-11773	-1588	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
167540	chr3	129317901	129318200	+	0	NA	non-coding (NR_026991, exon 2 of 5)	non-coding (NR_026991, exon 2 of 5)	-1764	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
12076	chr1	99180301	99180600	+	0	NA	Intergenic	Intergenic	-83842	NM_001166252	9890		NM_014839	ENSG00000117600	PLPPR4	LPPR4|LPR4|PHP1|PRG-1|PRG1	phospholipid phosphatase related 4	protein-coding
153458	chr22	25362171	25362830	+	0	NA	promoter-TSS (NM_182492)	promoter-TSS (NM_182492)	57	NM_182492	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
219339	chr8	70223001	70223200	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	-151848	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
137797	chr2	199914151	199914800	+	0	NA	intron (NM_153689, intron 1 of 1)	L2a|LINE|L2	3182	NM_153689	205327		NM_153689	ENSG00000178074	C2orf69	COXPD53	chromosome 2 open reading frame 69	protein-coding
207799	chr7	50270351	50270850	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-33464	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
17080	chr1	156126021	156126600	+	0	NA	intron (NM_001257374, intron 1 of 12)	intron (NM_001257374, intron 1 of 12)	140	NM_001257374	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
169153	chr3	156524271	156525150	+	0	NA	intron (NM_172160, intron 12 of 13)	AluY|SINE|Alu	29415	NM_001308205	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
229059	chr9	114344871	114345400	+	0	NA	intron (NM_001317952, intron 17 of 20)	AluSx1|SINE|Alu	15266	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
194997	chr6	35393901	35394930	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	51857	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
211944	chr7	112473701	112474280	+	0	NA	intron (NM_001550, intron 11 of 11)	L1MB5|LINE|L1	-6863	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
170908	chr3	194095551	194095650	+	0	NA	Intergenic	Intergenic	-24630	NR_136180	285389		NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
83018	chr16	22264851	22265150	+	0	NA	intron (NM_013302, intron 13 of 17).2	intron (NM_013302, intron 13 of 17).2	-32375	NM_001258035	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
67322	chr14	69627171	69627330	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	15654	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
152161	chr22	20027951	20028330	+	0	NA	intron (NM_001322172, intron 1 of 7)	AluJr|SINE|Alu	-4999	NR_029706	406961		NR_029706	ENSG00000208023	MIR185	MIRN185|miR-185	microRNA 185	ncRNA
180634	chr5	16759501	16759700	+	0	NA	intron (NM_012334, intron 17 of 40)	intron (NM_012334, intron 17 of 40)	-142542	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
142160	chr20	2824971	2825330	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	8786	NM_001167670	100288797		NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
122938	chr19	50707151	50707650	+	0	NA	intron (NM_016148, intron 8 of 23)	intron (NM_016148, intron 8 of 23)	12402	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
12283	chr1	100581121	100581380	+	0	NA	Intergenic	Intergenic	43111	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
5108	chr1	24862821	24863080	+	0	NA	Intergenic	Intergenic	56466	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
139581	chr2	224957251	224958150	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	-10651	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
2777	chr1	10796151	10796600	+	0	NA	intron (NM_017766, intron 1 of 15)	CpG	271	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
92359	chr17	8193871	8194030	+	0	NA	Intergenic	AluSq|SINE|Alu	-3770	NM_017622	54785		NM_017622	ENSG00000196544	BORCS6	C17orf59|PRO2472	BLOC-1 related complex subunit 6	protein-coding
93839	chr17	20991671	20992200	+	0	NA	Intergenic	Intergenic	51076	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
168025	chr3	136891551	136892050	+	0	NA	intron (NM_001291999, intron 1 of 3)	L1MB3|LINE|L1	29592	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
16470	chr1	154615071	154615230	+	0	NA	intron (NM_001365046, intron 1 of 15)	MLT1D|LTR|ERVL-MaLR	-6353	NM_001365048	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
216260	chr8	12434251	12434950	+	0	NA	intron (NR_148877, intron 1 of 4).2	L2a|LINE|L2	1698	NR_148878	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
170658	chr3	187220171	187220480	+	0	NA	intron (NM_001879, intron 15 of 15)	intron (NM_001879, intron 15 of 15)	-12696	NR_110052	101929106		NR_110052	ENSG00000198491	LOC101929106	-	uncharacterized LOC101929106	ncRNA
217975	chr8	38358371	38358630	+	0	NA	intron (NM_017778, intron 1 of 9)	intron (NM_017778, intron 1 of 9)	23771	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
62789	chr13	109145651	109145750	+	0	NA	intron (NM_015011, intron 32 of 34)	intron (NM_015011, intron 32 of 34)	21603	NR_047700	100885782		NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
96693	chr17	41334471	41334630	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	16278	NM_004138	3883		NM_004138	ENSG00000006059	KRT33A	HA3I|Ha-3I|K33A|KRTHA3A|Krt1-3|hHa3-I	keratin 33A	protein-coding
221641	chr8	125927951	125928250	+	0	NA	intron (NR_038447, intron 3 of 3)	L1M|LINE|L1	23097	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
64652	chr14	31422001	31422400	+	0	NA	intron (NR_110045, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	1442	NR_110045	101927124		NR_110045	ENSG00000250365	HEATR5A-DT	-	HEATR5A divergent transcript	ncRNA
206052	chr7	27154051	27154530	+	0	NA	non-coding (NR_038832, exon 3 of 3)	non-coding (NR_038832, exon 3 of 3)	-1707	NM_001384335	3200		NM_030661	ENSG00000105997	HOXA3	HOX1|HOX1E	homeobox A3	protein-coding
113620	chr19	10318601	10318980	+	0	NA	intron (NM_133452, intron 10 of 12)	intron (NM_133452, intron 10 of 12)	-2775	NM_001031734	112812		NM_080665	ENSG00000267673	FDX2	FDX1L|MEOAL	ferredoxin 2	protein-coding
180733	chr5	31825521	31825950	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	110424	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
129952	chr2	73927951	73928200	+	0	NA	intron (NR_134895, intron 1 of 2)	L2a|LINE|L2	1195	NM_080918	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
205317	chr7	12255971	12256630	+	0	NA	Intergenic	Intergenic	45006	NM_001134232	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
35636	chr11	1837651	1838630	+	0	NA	promoter-TSS (NM_003282)	promoter-TSS (NM_003282)	-841	NM_003282	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
135319	chr2	160336171	160336680	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	-64530	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
213126	chr7	131338051	131338580	+	0	NA	intron (NM_001321316, intron 1 of 17)	L1MEg|LINE|L1	10439	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
174346	chr4	38701801	38702000	+	0	NA	TTS (NM_016531)	TTS (NM_016531)	-37272	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
106609	chr18	22297071	22297250	+	0	NA	Intergenic	L2|LINE|L2	120755	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
158184	chr22	50226351	50226950	+	0	NA	intron (NM_020461, intron 7 of 24)	intron (NM_020461, intron 7 of 24)	18373	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
236607	chrX	74293431	74294200	+	0	NA	promoter-TSS (NR_028379)	promoter-TSS (NR_028379)	-241	NR_028379	100302692		NR_028379	ENSG00000230590	FTX	LINC00182|MIR374AHG|NCRNA00182	FTX transcript, XIST regulator	ncRNA
43657	chr11	85699751	85700480	+	0	NA	intron (NM_032943, intron 16 of 18)	intron (NM_032943, intron 16 of 18)	-13920	NM_152723	220388		NM_152723	ENSG00000179071	CCDC89	-	coiled-coil domain containing 89	protein-coding
51669	chr12	53061401	53062380	+	0	NA	exon (NM_015319, exon 22 of 29)	exon (NM_015319, exon 22 of 29)	4946	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
55661	chr12	107336571	107336730	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	16062	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
151114	chr21	44873101	44874600	+	0	NA	promoter-TSS (NR_104597)	promoter-TSS (NR_104597)	53	NM_001286822	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
111194	chr19	3439801	3440550	+	0	NA	intron (NM_205843, intron 6 of 10)	intron (NM_205843, intron 6 of 10)	40350	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
76984	chr15	78268101	78268300	+	0	NA	intron (NM_001130183, intron 1 of 6)	intron (NM_001130183, intron 1 of 6)	1982	NM_001130183	55466		NM_018602	ENSG00000140403	DNAJA4	MST104|MSTP104|PRO1472	DnaJ heat shock protein family (Hsp40) member A4	protein-coding
132742	chr2	109513601	109514200	+	0	NA	Intergenic	Intergenic	99767	NM_001321515	151011		NM_144710	ENSG00000186522	SEPTIN10	SEPT10|Septin-10	septin 10	protein-coding
129602	chr2	70094001	70094600	+	0	NA	Intergenic	Intergenic	6823	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
224240	chr9	5843651	5844150	+	0	NA	Intergenic	Intergenic	-10783	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
8890	chr1	43832051	43832350	+	0	NA	intron (NM_174963, intron 5 of 12)	intron (NM_174963, intron 5 of 12)	-6422	NR_106727	102464830		NR_106727	ENSG00000283477	MIR6079	hsa-mir-6079	microRNA 6079	ncRNA
44309	chr11	102357051	102357350	+	0	NA	intron (NM_001256166, intron 3 of 8)	L1MA9|LINE|L1	9826	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
236957	chrX	101207821	101208280	+	0	NA	Intergenic	L2c|LINE|L2	-11894	NM_001171184	1821		NM_001939	ENSG00000102385	DRP2	DRP-2	dystrophin related protein 2	protein-coding
182863	chr5	69730601	69730800	+	0	NA	Intergenic	Intergenic	11438	NR_134269	102724392		NR_134268		LINC02197	-	long intergenic non-protein coding RNA 2197	ncRNA
106959	chr18	31658201	31658530	+	0	NA	intron (NM_001330570, intron 1 of 7)	intron (NM_001330570, intron 1 of 7)	26216	NM_004775	9331		NM_004775	ENSG00000118276	B4GALT6	B4Gal-T6|beta4Gal-T6	beta-1,4-galactosyltransferase 6	protein-coding
73463	chr15	43490171	43490630	+	0	NA	intron (NM_001355001, intron 4 of 28)	AluJb|SINE|Alu	2756	NM_001141980	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
215886	chr8	7954871	7955380	+	0	NA	non-coding (NR_027424, exon 1 of 7)	non-coding (NR_027424, exon 1 of 7)	112	NR_027424	100132103		NR_027424	ENSG00000225725	FAM66E	-	family with sequence similarity 66 member E	ncRNA
148735	chr21	7258571	7259630	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-171537	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
48445	chr12	9709201	9709400	+	0	NA	Intergenic	HUERS-P2-int|LTR|ERV1	23999	NM_001267701	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
33030	chr10	110786221	110786680	+	0	NA	intron (NM_001134363, intron 5 of 13)	intron (NM_001134363, intron 5 of 13)	84454	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
172526	chr4	2290751	2292030	+	0	NA	intron (NM_020972, intron 8 of 12)	intron (NM_020972, intron 8 of 12)	-29281	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
215507	chr7	158679951	158680450	+	0	NA	intron (NM_001281932, intron 11 of 28)	intron (NM_001281932, intron 11 of 28)	24604	NM_001281932	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
70335	chr14	101844771	101845830	+	0	NA	intron (NM_001352916, intron 2 of 13)	MIRc|SINE|MIR	35437	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
148869	chr21	8435001	8437700	+	0	NA	promoter-TSS (NR_146146).3	promoter-TSS (NR_146146).3	25	NR_162105	113218501		NR_162105		MIR10396A	-	microRNA 10396a	ncRNA
71866	chr15	22359401	22360100	+	0	NA	Intergenic	Intergenic	78276	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
41567	chr11	66329951	66330380	+	0	NA	TTS (NM_001363559)	TTS (NM_001363559)	6269	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
222277	chr8	133299221	133299730	+	0	NA	Intergenic	Intergenic	-2223	NM_001258433	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
66626	chr14	63759171	63760200	+	0	NA	Intergenic	Intergenic	-31620	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
53559	chr12	67592601	67593100	+	0	NA	Intergenic	MER63B|DNA|hAT-Blackjack	-55895	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
192676	chr6	26233401	26234400	+	0	NA	TTS (NM_005320)	TTS (NM_005320)	1087	NM_005320	3007		NM_005320	ENSG00000124575	H1-3	H1.3|H1D|H1F3|H1s-2|HIST1H1D	H1.3 linker histone, cluster member	protein-coding
135013	chr2	154402271	154402430	+	0	NA	intron (NM_001376401, intron 10 of 12)	intron (NM_001376401, intron 10 of 12)	55088	NR_161181	100144595		NR_161181	ENSG00000224675	GALNT13-AS1	-	GALNT13 antisense RNA 1	ncRNA
87415	chr16	70675851	70676350	+	0	NA	intron (NM_138383, intron 10 of 14)	intron (NM_138383, intron 10 of 14)	9953	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
134415	chr2	143006471	143006650	+	0	NA	intron (NM_001199241, intron 11 of 14)	L1PA2|LINE|L1	-122859	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
1220	chr1	2269151	2269250	+	0	NA	intron (NM_003036, intron 1 of 6)	AluJr|SINE|Alu	40881	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
95268	chr17	35495551	35496950	+	0	NA	intron (NM_001363830, intron 2 of 4)	FRAM|SINE|Alu	-8511	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
51003	chr12	49664421	49665330	+	0	NA	intron (NM_175736, intron 4 of 25)	intron (NM_175736, intron 4 of 25)	41314	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
178141	chr4	142285421	142285880	+	0	NA	intron (NR_169617, intron 7 of 22)	L2a|LINE|L2	20182	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
6714	chr1	29245871	29246030	+	0	NA	intron (NM_133177, intron 1 of 30)	intron (NM_133177, intron 1 of 30)	9428	NM_133177	10076		NM_005704	ENSG00000060656	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	protein tyrosine phosphatase receptor type U	protein-coding
150533	chr21	42977151	42977450	+	0	NA	intron (NM_001320694, intron 1 of 10)	Tigger1|DNA|TcMar-Tigger	2738	NM_004571	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
134688	chr2	144483071	144483430	+	0	NA	intron (NM_014795, intron 2 of 9)	MIRc|SINE|MIR	-36364	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
7936	chr1	37522221	37522480	+	0	NA	Intergenic	AluSg|SINE|Alu	-7584	NR_073090	64769		NM_022756	ENSG00000163875	MEAF6	C1orf149|CENP-28|EAF6|NY-SAR-91	MYST/Esa1 associated factor 6	protein-coding
111929	chr19	4729971	4730130	+	0	NA	Intergenic	L2a|LINE|L2	-6208	NR_169285	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
151636	chr22	16563071	16563450	+	0	NA	Intergenic	(CAAGCCAGC)n|Simple_repeat|Simple_repeat	29550	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
125969	chr2	25251601	25253180	+	0	NA	promoter-TSS (NM_001375819)	promoter-TSS (NM_001375819)	-75	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
224573	chr9	19976351	19976600	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-187438	NM_001193288	25769		NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
205084	chr7	6645221	6645480	+	0	NA	intron (NM_001278559, intron 8 of 8)	intron (NM_001278559, intron 8 of 8)	8032	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
131008	chr2	87823501	87823980	+	0	NA	intron (NM_001024457, intron 1 of 22).2	intron (NM_001024457, intron 1 of 22).2	2027	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
36491	chr11	6378001	6378600	+	0	NA	Intergenic	Intergenic	-12174	NM_001365135	6609		NM_000543	ENSG00000166311	SMPD1	ASM|ASMASE|NPD	sphingomyelin phosphodiesterase 1	protein-coding
52035	chr12	54004021	54004500	+	0	NA	TTS (NM_006897)	TTS (NM_006897)	4099	NM_006897	3225		NM_006897	ENSG00000180806	HOXC9	HOX3|HOX3B	homeobox C9	protein-coding
36805	chr11	9612751	9613600	+	0	NA	Intergenic	Intergenic	38488	NM_001143976	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
81780	chr16	11523201	11524000	+	0	NA	intron (NM_001370704, intron 1 of 66)	intron (NM_001370704, intron 1 of 66)	3647	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
199985	chr6	127995421	127995680	+	0	NA	intron (NM_001291981, intron 19 of 32).2	intron (NM_001291981, intron 19 of 32).2	-32315	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
143756	chr20	32378871	32379280	+	0	NA	intron (NM_015338, intron 3 of 11)	intron (NM_015338, intron 3 of 11)	20010	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
229353	chr9	120925601	120927080	+	0	NA	intron (NM_005658, intron 1 of 7)	intron (NM_005658, intron 1 of 7)	456	NM_005658	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
180116	chr5	1290651	1291580	+	0	NA	intron (NR_149162, intron 2 of 12)	CpG	3953	NM_198253	7015		NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
204718	chr7	5548051	5548400	+	0	NA	Intergenic	AluJo|SINE|Alu	-17624	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
106731	chr18	23522521	23522980	+	0	NA	intron (NM_001276342, intron 8 of 17)	intron (NM_001276342, intron 8 of 17)	19239	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
219033	chr8	65643701	65645500	+	0	NA	promoter-TSS (NM_001145839)	promoter-TSS (NM_001145839)	-53	NM_001145839	9650		NM_014637	ENSG00000066855	MTFR1	CHPPR|FAM54A2	mitochondrial fission regulator 1	protein-coding
105287	chr17	82487571	82487930	+	0	NA	intron (NM_031968, intron 11 of 11)	AluJr4|SINE|Alu	29009	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
167273	chr3	128620401	128621180	+	0	NA	intron (NM_002950, intron 9 of 9)	MIRb|SINE|MIR	30028	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
235289	chrX	42020221	42020480	+	0	NA	Intergenic	Intergenic	-96796	NM_001367721	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
144236	chr20	34416271	34416830	+	0	NA	intron (NM_031483, intron 6 of 24)	MER44A|DNA|TcMar-Tigger	-49775	NR_030374	693229		NR_030374	ENSG00000207997	MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	ncRNA
170371	chr3	184620451	184620550	+	0	NA	Intergenic	Intergenic	58715	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
72298	chr15	31081621	31081880	+	0	NA	intron (NM_001252024, intron 1 of 27).3	intron (NM_001252024, intron 1 of 27).3	-16609	NR_029624	406993		NR_029624	ENSG00000207702	MIR211	MIRN211|mir-211	microRNA 211	ncRNA
211022	chr7	102404121	102404980	+	0	NA	intron (NR_038967, intron 6 of 8)	intron (NR_038967, intron 6 of 8)	1305	NR_031669	100313829		NR_031669	ENSG00000221510	MIR548O	MIRN548O	microRNA 548o	ncRNA
186094	chr5	134115311	134116400	+	0	NA	non-coding (NR_033449, exon 1 of 8)	non-coding (NR_033449, exon 1 of 8)	242	NM_001134851	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
225062	chr9	33242871	33243230	+	0	NA	intron (NM_014471, intron 1 of 3)	AluJr|SINE|Alu	2883	NM_014471	27290		NM_014471	ENSG00000122711	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor Kazal type 4	protein-coding
896	chr1	1666571	1666730	+	0	NA	intron (NM_001110781, intron 8 of 8)	AluSx|SINE|Alu	-7646	NM_001787	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
88983	chr16	87898801	87899000	+	0	NA	intron (NR_159798, intron 5 of 7)	AluSx|SINE|Alu	-29393	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
27393	chr10	31317151	31317450	+	0	NA	non-coding (NR_024284, exon 2 of 2)	non-coding (NR_024284, exon 2 of 2)	-1117	NM_001323638	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
122074	chr19	48720491	48722230	+	0	NA	intron (NM_017805, intron 11 of 11)	intron (NM_017805, intron 11 of 11)	-1635	NM_001130915	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
4726	chr1	23342121	23342800	+	0	NA	intron (NM_001102398, intron 1 of 10).2	intron (NM_001102398, intron 1 of 10).2	1824	NM_001297622	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
73070	chr15	40918371	40918530	+	0	NA	Intergenic	Intergenic	-10890	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
139306	chr2	219527971	219528330	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	13668	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
170877	chr3	192915071	192915630	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	2506	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
184953	chr5	113062351	113062850	+	0	NA	intron (NM_001085377, intron 14 of 18)	intron (NM_001085377, intron 14 of 18)	85802	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
188013	chr5	149549401	149550500	+	0	NA	intron (NM_001892, intron 2 of 9)	intron (NM_001892, intron 2 of 9)	415	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
200595	chr6	136639771	136640330	+	0	NA	intron (NM_005923, intron 12 of 29)	intron (NM_005923, intron 12 of 29)	10936	NR_125858	101928461		NR_125858	ENSG00000234263	MAP3K5-AS1	-	MAP3K5 antisense RNA 1	ncRNA
226915	chr9	79575701	79576230	+	0	NA	intron (NM_001351547, intron 3 of 18)	intron (NM_001351547, intron 3 of 18)	2788	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
65687	chr14	52724371	52724730	+	0	NA	intron (NR_158967, intron 14 of 14)	intron (NR_158967, intron 14 of 14)	-5616	NM_001130701	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
58859	chr12	133079451	133081550	+	0	NA	5' UTR (NM_003440, exon 1 of 5)	5' UTR (NM_003440, exon 1 of 5)	297	NM_003440	7699		NM_003440	ENSG00000196387	ZNF140	pHZ-39	zinc finger protein 140	protein-coding
190645	chr5	181231301	181231830	+	0	NA	intron (NM_201627, intron 2 of 7)	intron (NM_201627, intron 2 of 7)	8284	NR_045218	90933		NM_033549	ENSG00000146063	TRIM41	RINCK	tripartite motif containing 41	protein-coding
23378	chr1	228172851	228173230	+	0	NA	intron (NM_001010867, intron 1 of 2)	intron (NM_001010867, intron 1 of 2)	-1530	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
46200	chr11	123479851	123479950	+	0	NA	intron (NM_001367421, intron 2 of 20)	MER58B|DNA|hAT-Charlie	-30016	NM_001330396	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
140015	chr2	230988671	230989130	+	0	NA	intron (NR_033879, intron 4 of 5)	intron (NR_033879, intron 4 of 5)	7132	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
187161	chr5	140563901	140565550	+	0	NA	promoter-TSS (NM_006051)	promoter-TSS (NM_006051)	-121	NM_133174	10307		NM_006051	ENSG00000113108	APBB3	FE65L2|SRA	amyloid beta precursor protein binding family B member 3	protein-coding
233428	chr9	137608101	137608700	+	0	NA	intron (NM_001317968, intron 1 of 6)	intron (NM_001317968, intron 1 of 6)	2714	NM_152285	92714		NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
222026	chr8	130134921	130135180	+	0	NA	intron (NM_001362924, intron 15 of 30)	intron (NM_001362924, intron 15 of 30)	-50282	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
164777	chr3	69161521	69161900	+	0	NA	Intergenic	Intergenic	-39115	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
24034	chr1	235278771	235279180	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJb|SINE|Alu	-48241	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
102188	chr17	75156001	75156200	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1588	NM_001002033	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
184603	chr5	103232421	103232780	+	0	NA	Intergenic	Intergenic	-25774	NM_001377283	90355		NM_033211	ENSG00000181751	MACIR	C5orf30	macrophage immunometabolism regulator	protein-coding
142313	chr20	3660001	3660200	+	0	NA	intron (NM_022139, intron 5 of 5)	intron (NM_022139, intron 5 of 5)	3299	NM_022139	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
174379	chr4	39016851	39017150	+	0	NA	intron (NM_001303228, intron 1 of 6)	THE1B|LTR|ERVL-MaLR	15409	NM_024943	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
154165	chr22	31293821	31294080	+	0	NA	Intergenic	AluSx|SINE|Alu	-1416	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
74649	chr15	60890451	60890550	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	208931	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
181083	chr5	36874601	36875500	+	0	NA	non-coding (NR_046262, exon 1 of 1)	non-coding (NR_046262, exon 1 of 1)	1644	NR_046262	646719		NR_046262	ENSG00000285967	NIPBL-DT	NIPBL-AS|NIPBL-AS1	NIPBL divergent transcript	ncRNA
75676	chr15	67823871	67824030	+	0	NA	Intergenic	CpG	-1559	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
16063	chr1	153277901	153278200	+	0	NA	Intergenic	Intergenic	18363	NM_000427	4014		NM_000427	ENSG00000203782	LORICRIN	LOR	loricrin cornified envelope precursor protein	protein-coding
179559	chr4	185183421	185184100	+	0	NA	intron (NM_001292033, intron 2 of 3)	intron (NM_001292033, intron 2 of 3)	20240	NM_020827	57587		NM_020827	ENSG00000164323	CFAP97	KIAA1430|hmw	cilia and flagella associated protein 97	protein-coding
104394	chr17	81042851	81042950	+	0	NA	intron (NR_169579, intron 2 of 15)	(TTTAA)n|Simple_repeat|Simple_repeat	7749	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
97685	chr17	44307751	44309580	+	0	NA	promoter-TSS (NR_110802)	promoter-TSS (NR_110802)	64	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
3789	chr1	16705751	16706250	+	0	NA	intron (NR_026567, intron 4 of 10)	AluSc|SINE|Alu	14157	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
156927	chr22	42298501	42298700	+	0	NA	Intergenic	Intergenic	-14673	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
165651	chr3	101829001	101829850	+	0	NA	intron (NM_001005474, intron 1 of 12)	intron (NM_001005474, intron 1 of 12)	1435	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
24817	chr10	264601	265280	+	0	NA	Intergenic	Intergenic	84946	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
129420	chr2	69375651	69376900	+	0	NA	intron (NM_001244710, intron 1 of 19)	AluSx|SINE|Alu	10952	NM_002056	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
23667	chr1	231315871	231316100	+	0	NA	Intergenic	Intergenic	21867	NM_175876	149371		NM_175876	ENSG00000116903	EXOC8	EXO84|Exo84p|NEDMISB|SEC84	exocyst complex component 8	protein-coding
67092	chr14	68272151	68272650	+	0	NA	intron (NM_133509, intron 7 of 10)	MIR|SINE|MIR	356387	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
10361	chr1	64944721	64945150	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	21614	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
173208	chr4	6855351	6856200	+	0	NA	intron (NM_014743, intron 4 of 9)	intron (NM_014743, intron 4 of 9)	-53669	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
157863	chr22	49324821	49325130	+	0	NA	Intergenic	Intergenic	218491	NR_037440	100500882		NR_037440	ENSG00000264139	MIR3667	-	microRNA 3667	ncRNA
186406	chr5	135403871	135404100	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-4098	NM_004893	9555		NM_004893	ENSG00000113648	MACROH2A1	H2A.y|H2A/y|H2AF12M|H2AFY|MACROH2A1.1|mH2A1|macroH2A1.2	macroH2A.1 histone	protein-coding
90621	chr17	1644801	1645430	+	0	NA	intron (NM_145350, intron 2 of 10).2	intron (NM_145350, intron 2 of 10).2	617	NM_145350	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
86907	chr16	68066771	68067400	+	0	NA	intron (NM_001271763, intron 8 of 14)	intron (NM_001271763, intron 8 of 14)	-18285	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
87632	chr16	74466571	74467150	+	0	NA	intron (NM_001145667, intron 18 of 25)	L1MEi|LINE|L1	-44719	NM_001385192	497190		NM_001011880	ENSG00000140839	CLEC18B	MRCL2	C-type lectin domain family 18 member B	protein-coding
20934	chr1	202203451	202204900	+	0	NA	intron (NM_021636, intron 1 of 17)	intron (NM_021636, intron 1 of 17)	463	NM_021636	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
165901	chr3	106332921	106333300	+	0	NA	Intergenic	Intergenic	-463709	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
109015	chr18	79716951	79717750	+	0	NA	intron (NM_001318511, intron 8 of 11)	intron (NM_001318511, intron 8 of 11)	35920	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
184704	chr5	109341521	109342580	+	0	NA	intron (NM_014819, intron 9 of 9)	SVA_F|Retroposon|SVA	-15681	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
113402	chr19	9406921	9407200	+	0	NA	Intergenic	CpG	28513	NM_001370384	10781		NM_006631	ENSG00000174652	ZNF266	HZF1	zinc finger protein 266	protein-coding
103725	chr17	78839251	78842100	+	0	NA	5' UTR (NM_001321291, exon 1 of 21)	5' UTR (NM_001321291, exon 1 of 21)	139	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
237088	chrX	103918001	103919730	+	0	NA	promoter-TSS (NM_001350213)	promoter-TSS (NM_001350213)	-31	NM_001350211	286527		NM_194324	ENSG00000158427	TMSB15B	TMSB15A|TMSL8|TMSNB|Tbeta15b	thymosin beta 15B	protein-coding
64725	chr14	34463951	34464730	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2100	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
225178	chr9	33920901	33921530	+	0	NA	TTS (NM_018449)	TTS (NM_018449)	13149	NM_001282530	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
66448	chr14	61542551	61542650	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	27594	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
230894	chr9	129225601	129226430	+	0	NA	Intergenic	Intergenic	-47754	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
146508	chr20	49907071	49907430	+	0	NA	intron (NM_001135773, intron 2 of 2)	AluSg|SINE|Alu	6489	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
154504	chr22	35696601	35698250	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-20447	NM_030642	80831		NM_030642	ENSG00000128313	APOL5	APOL-V|APOLV	apolipoprotein L5	protein-coding
205536	chr7	19706321	19706830	+	0	NA	intron (NM_001002926, intron 1 of 3)	MER20B|DNA|hAT-Charlie	-1139	NR_036101	100422967		NR_036101	ENSG00000265932	MIR3146	mir-3146	microRNA 3146	ncRNA
26385	chr10	16902721	16903080	+	0	NA	intron (NM_001081, intron 51 of 66)	L1MEd|LINE|L1	-85446	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
22220	chr1	212556901	212557500	+	0	NA	Intergenic	Tigger1a_Art|DNA|TcMar-Tigger	-8134	NM_001030287	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
90570	chr17	1520701	1521900	+	0	NA	intron (NM_006224, intron 11 of 11)	intron (NM_006224, intron 11 of 11)	4381	NR_028514	100306951		NR_028514	ENSG00000236618	PITPNA-AS1	-	PITPNA antisense RNA 1	ncRNA
60834	chr13	45417021	45419200	+	0	NA	promoter-TSS (NR_047031)	promoter-TSS (NR_047031)	-52	NR_047031	100874259		NR_047031	ENSG00000251015	SLC25A30-AS1	-	SLC25A30 antisense RNA 1	ncRNA
113174	chr19	8397851	8397950	+	0	NA	intron (NM_004218, intron 1 of 4)	intron (NM_004218, intron 1 of 4)	-7209	NR_038237	100507567		NR_038237	ENSG00000269386	RAB11B-AS1	MIR4999HG	RAB11B antisense RNA 1	ncRNA
205811	chr7	24442141	24443000	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-130882	NM_016447	51678		NM_016447	ENSG00000105926	PALS2	MPP6|VAM-1|VAM1|p55T	protein associated with LIN7 2, MAGUK p55 family member	protein-coding
98768	chr17	48118621	48118880	+	0	NA	exon (NM_001330320, exon 5 of 7)	exon (NM_001330320, exon 5 of 7)	10984	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
44107	chr11	95924971	95925280	+	0	NA	Intergenic	Intergenic	-1018	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
21557	chr1	206282451	206282780	+	0	NA	intron (NM_001377446, intron 2 of 21)	intron (NM_001377446, intron 2 of 21)	-76842	NM_001385243	729533		NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
50228	chr12	46231771	46231930	+	0	NA	intron (NM_001278387, intron 4 of 17)	AluSz6|SINE|Alu	34666	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
165378	chr3	93979601	93980950	+	0	NA	non-coding (NR_135621, exon 1 of 9)	non-coding (NR_135621, exon 1 of 9)	120	NR_033427	200894		NM_144996	ENSG00000169379	ARL13B	ARL2L1|JBTS8	ADP ribosylation factor like GTPase 13B	protein-coding
147117	chr20	53943751	53944200	+	0	NA	3' UTR (NM_001316361, exon 10 of 10)	3' UTR (NM_001316361, exon 10 of 10)	-68266	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
98539	chr17	47658521	47659050	+	0	NA	intron (NM_002265, intron 5 of 21)	intron (NM_002265, intron 5 of 21)	7720	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
177726	chr4	122252351	122252650	+	0	NA	intron (NM_001384125, intron 37 of 87)	L1M1|LINE|L1	81897	NM_015312	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
64917	chr14	35418271	35418630	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-13701	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
132411	chr2	105804821	105805130	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	-46872	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
199492	chr6	118656171	118656330	+	0	NA	intron (NM_001178035, intron 1 of 13)	L2|LINE|L2	-4659	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
80749	chr16	3149701	3151310	+	0	NA	TTS (NR_132322)	TTS (NR_132322)	6214	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
4247	chr1	19596221	19598730	+	0	NA	promoter-TSS (NR_135054)	promoter-TSS (NR_135054)	496	NM_001204088	100532736		NM_001204088	ENSG00000158747	MICOS10-NBL1	C1orf151-NBL1|DAN|DAND1|MINOS1-NBL1|NBL1	MICOS10-NBL1 readthrough	protein-coding
6449	chr1	28246251	28246800	+	0	NA	Intergenic	Intergenic	10401	NM_016311	93974		NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
27023	chr10	26845871	26846800	+	0	NA	intron (NM_001178116, intron 1 of 11)	AluSz|SINE|Alu	14623	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
175562	chr4	75637371	75637730	+	0	NA	Intergenic	AluJb|SINE|Alu	-7022	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
116183	chr19	17449501	17449850	+	0	NA	Intergenic	AluJo|SINE|Alu	-1007	NM_001190844	100130519		NM_001190844	ENSG00000188051	TMEM221	Jiraiya	transmembrane protein 221	protein-coding
38911	chr11	47419821	47420630	+	0	NA	intron (NM_002804, intron 10 of 11)	(CTCCTG)n|Simple_repeat|Simple_repeat	6214	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
137542	chr2	197221951	197222250	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	24109	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
16609	chr1	155069571	155070180	+	0	NA	TTS (NM_005227)	TTS (NM_005227)	-5884	NR_040773	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
85563	chr16	53450871	53451050	+	0	NA	intron (NM_001323609, intron 4 of 20)	intron (NM_001323609, intron 4 of 20)	15341	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
1131	chr1	2142551	2143250	+	0	NA	intron (NR_146911, intron 2 of 15)	intron (NR_146911, intron 2 of 15)	38184	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
208463	chr7	66986571	66986730	+	0	NA	Intergenic	AluSz|SINE|Alu	8936	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
131464	chr2	96359301	96360830	+	0	NA	intron (NM_001281711, intron 10 of 17)	intron (NM_001281711, intron 10 of 17)	24299	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
195930	chr6	41893151	41893650	+	0	NA	intron (NM_001286554, intron 1 of 7)	intron (NM_001286554, intron 1 of 7)	-1525	NM_001384542	25862		NM_018561	ENSG00000164663	USP49	-	ubiquitin specific peptidase 49	protein-coding
188319	chr5	151213151	151213250	+	0	NA	intron (NR_160730, intron 2 of 3)	intron (NR_160730, intron 2 of 3)	1066	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
132597	chr2	108448171	108449950	+	0	NA	promoter-TSS (NM_181453)	promoter-TSS (NM_181453)	-146	NM_181453	9648		NM_181453	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
78656	chr15	94298451	94298750	+	0	NA	exon (NM_001385008, exon 2 of 18)	exon (NM_001385008, exon 2 of 18)	-57330	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
202599	chr6	158713401	158714000	+	0	NA	intron (NM_001242395, intron 8 of 15)	(CACACC)n|Simple_repeat|Simple_repeat	50297	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
43912	chr11	89910201	89910400	+	0	NA	Intergenic	Intergenic	10108	NM_001105522	729384		NM_001105522	ENSG00000233802	TRIM49D2	TRIM48L1|TRIM49D1|TRIM49D2P|TRIM49L|TRIM49L1	tripartite motif containing 49D2	protein-coding
92157	chr17	7682921	7683180	+	0	NA	intron (NM_000546, intron 1 of 10)	AluSx1|SINE|Alu	-3021	NM_001143990	55135		NM_018081	ENSG00000141499	WRAP53	DKCB3|TCAB1|WDR79	WD repeat containing antisense to TP53	protein-coding
214480	chr7	150377971	150378500	+	0	NA	Intergenic	Intergenic	-1095	NM_173680	285971		NM_173680	ENSG00000196456	ZNF775	-	zinc finger protein 775	protein-coding
51178	chr12	50220151	50221250	+	0	NA	intron (NM_001113547, intron 1 of 7)	intron (NM_001113547, intron 1 of 7)	1958	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
162740	chr3	49041471	49042130	+	0	NA	intron (NM_001320580, intron 7 of 10)	AluSc8|SINE|Alu	-12402	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
19816	chr1	182621921	182622500	+	0	NA	Intergenic	Intergenic	7070	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
181389	chr5	40676801	40677380	+	0	NA	Intergenic	Intergenic	-2825	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
192649	chr6	26169951	26170700	+	0	NA	intron (NM_138720, intron 1 of 1)	L2a|LINE|L2	12203	NM_021063	3017		NM_021063	ENSG00000158373	H2BC5	H2B.1B|H2B/a|H2B/b|H2B/g|H2B/h|H2B/k|H2B/l|H2BFA|H2BFB|H2BFG|H2BFH|H2BFK|H2BFL|HIRIP2|HIST1H2BC|HIST1H2BD|HIST1H2BE|HIST1H2BF|HIST1H2BG|HIST1H2BI|dJ221C16.6	H2B clustered histone 5	protein-coding
124457	chr19	58517071	58517400	+	0	NA	exon (NM_001316978, exon 2 of 3)	exon (NM_001316978, exon 2 of 3)	2367	NM_001316978	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
236365	chrX	70769771	70769930	+	0	NA	intron (NM_031276, intron 9 of 29)	intron (NM_031276, intron 9 of 29)	76445	NR_145758	109617015		NR_145758	ENSG00000280704	SNORD3E	-	small nucleolar RNA, C/D box 3E	snoRNA
30423	chr10	79022771	79023430	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	44348	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
175475	chr4	73071971	73072130	+	0	NA	Intergenic	Intergenic	-2291	NM_001300729	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
86336	chr16	66429251	66429730	+	0	NA	intron (NM_001136106, intron 1 of 3)	intron (NM_001136106, intron 1 of 3)	2195	NM_001197225	146227		NM_001136106	ENSG00000166546	BEAN1	BEAN|SCA31	brain expressed associated with NEDD4 1	protein-coding
174073	chr4	26975651	26975950	+	0	NA	intron (NM_020860, intron 3 of 11)	L1PA6|LINE|L1	114959	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
142019	chr20	1654751	1655580	+	0	NA	intron (NM_018556, intron 1 of 5)	L1MA8|LINE|L1	2614	NM_080816	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
55879	chr12	109595071	109595900	+	0	NA	intron (NM_001301182, intron 9 of 9)	intron (NM_001301182, intron 9 of 9)	21691	NM_001114185	4598		NM_000431	ENSG00000110921	MVK	LRBP|MK|MVLK|POROK3	mevalonate kinase	protein-coding
51871	chr12	53488771	53489850	+	0	NA	intron (NM_006301, intron 1 of 14)	AluJb|SINE|Alu	10148	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
70213	chr14	100586371	100586530	+	0	NA	intron (NM_001385093, intron 1 of 5)	intron (NM_001385093, intron 1 of 5)	967	NM_001385101	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
54846	chr12	95220201	95220400	+	0	NA	intron (NR_147923, intron 1 of 11)	AluJb|SINE|Alu	2493	NM_001352119	55591		NM_017599	ENSG00000028203	VEZT	VEZATIN	vezatin, adherens junctions transmembrane protein	protein-coding
101872	chr17	74277451	74277750	+	0	NA	intron (NM_001172810, intron 1 of 13)	intron (NM_001172810, intron 1 of 13)	3366	NM_023036	64446		NM_023036	ENSG00000171595	DNAI2	CILD9|DIC2|oda6	dynein axonemal intermediate chain 2	protein-coding
2725	chr1	10658771	10658930	+	0	NA	intron (NM_017766, intron 6 of 15)	intron (NM_017766, intron 6 of 15)	137796	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
60017	chr13	32534801	32535450	+	0	NA	intron (NM_001278432, intron 2 of 9)	intron (NM_001278432, intron 2 of 9)	3670	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
30375	chr10	78033471	78035000	+	0	NA	intron (NM_033022, intron 1 of 5)	intron (NM_033022, intron 1 of 5)	372	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
57310	chr12	121670151	121670250	+	0	NA	promoter-TSS (NM_173855)	promoter-TSS (NM_173855)	-546	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
134293	chr2	135916301	135916700	+	0	NA	intron (NM_001293312, intron 9 of 14)	intron (NM_001293312, intron 9 of 14)	-40057	NM_005915	4175		NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
63102	chr13	113296721	113298700	+	0	NA	intron (NM_005561, intron 1 of 8)	intron (NM_005561, intron 1 of 8)	471	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
88801	chr16	87391351	87393730	+	0	NA	promoter-TSS (NM_001282683)	promoter-TSS (NM_001282683)	204	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
88495	chr16	85169071	85170130	+	0	NA	Intergenic	CpG	32450	NR_033984	400548		NR_033984	ENSG00000278214	LINC02139	-	long intergenic non-protein coding RNA 2139	ncRNA
27848	chr10	39967551	39967650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1271004	NR_045000	399746		NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
34385	chr10	132328971	132329130	+	0	NA	TTS (NM_001318882)	TTS (NM_001318882)	2830	NM_001318882	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
32099	chr10	101161571	101162250	+	0	NA	Intergenic	Intergenic	-14412	NR_120620	101927396		NR_120620	ENSG00000237579	LINC01514	-	long intergenic non-protein coding RNA 1514	ncRNA
30651	chr10	80470021	80470280	+	0	NA	intron (NM_001351272, intron 2 of 9)	AluSx|SINE|Alu	1909	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
141772	chr2	242036051	242036350	+	0	NA	intron (NR_110220, intron 3 of 3)	intron (NR_110220, intron 3 of 3)	34991	NR_149023	285097		NM_178530	ENSG00000280119	LOC285097	-	uncharacterized FLJ38379	ncRNA
53603	chr12	68042221	68042550	+	0	NA	Intergenic	Intergenic	52940	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
211883	chr7	111093771	111093930	+	0	NA	intron (NM_018334, intron 1 of 1)	intron (NM_018334, intron 1 of 1)	2723	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
113440	chr19	9817151	9817250	+	0	NA	intron (NM_001316942, intron 2 of 3)	AluJo|SINE|Alu	1879	NM_001316938	54850		NM_017703	ENSG00000127452	FBXL12	Fbl12	F-box and leucine rich repeat protein 12	protein-coding
75860	chr15	69666471	69666930	+	0	NA	intron (NR_126437, intron 3 of 5)	intron (NR_126437, intron 3 of 5)	74500	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
88460	chr16	85010801	85012500	+	0	NA	promoter-TSS (NM_001145548)	promoter-TSS (NM_001145548)	-115	NM_001145548	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
84231	chr16	29987151	29987450	+	0	NA	exon (NM_001252043, exon 17 of 17)	exon (NM_001252043, exon 17 of 17)	8317	NM_003609	8479		NM_003609	ENSG00000149929	HIRIP3	-	HIRA interacting protein 3	protein-coding
163069	chr3	49946371	49946530	+	0	NA	intron (NR_146071, intron 1 of 15)	AluSx1|SINE|Alu	6300	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
25735	chr10	9062051	9062350	+	0	NA	Intergenic	Intergenic	164211	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
74016	chr15	52174051	52174150	+	0	NA	intron (NM_016194, intron 3 of 12)	MLT1D|LTR|ERVL-MaLR	5591	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
58020	chr12	124397771	124398330	+	0	NA	intron (NM_001077261, intron 18 of 47)	intron (NM_001077261, intron 18 of 47)	-60808	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
223163	chr8	143538171	143538330	+	0	NA	exon (NM_015117, exon 2 of 12)	exon (NM_015117, exon 2 of 12)	3197	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
88108	chr16	81551121	81551930	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	17623	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
208205	chr7	65079651	65080080	+	0	NA	Intergenic	AluJb|SINE|Alu	9327	NR_145713	109617022		NR_145713	ENSG00000206785	SNORA15B-2	SNORA15C	small nucleolar RNA, H/ACA box 15B-2	snoRNA
27141	chr10	28300921	28301180	+	0	NA	intron (NM_001318170, intron 1 of 16)	intron (NM_001318170, intron 1 of 16)	2014	NR_134518	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
75401	chr15	65761171	65761850	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	30783	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
71409	chr14	105537651	105538750	+	0	NA	Intergenic	Intergenic	6345	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
75895	chr15	69781971	69782330	+	0	NA	Intergenic	Intergenic	-53084	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
218813	chr8	59096971	59097330	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	21997	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
188941	chr5	160473071	160473600	+	0	NA	intron (NR_132748, intron 1 of 1)	MIR|SINE|MIR	-1067	NR_036095	100422938		NR_036095		MIR3142	-	microRNA 3142	ncRNA
195321	chr6	36605301	36606650	+	0	NA	TTS (NM_003017)	TTS (NM_003017)	11613	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
85786	chr16	56944751	56944850	+	0	NA	TTS (NM_001272103)	TTS (NM_001272103)	12658	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
175558	chr4	75598451	75598700	+	0	NA	intron (NM_003948, intron 7 of 11)	Charlie1a|DNA|hAT-Charlie	31953	NM_003948	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
143547	chr20	31586871	31587030	+	0	NA	Intergenic	AluY|SINE|Alu	-13687	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
215790	chr8	2191101	2192100	+	0	NA	Intergenic	(TCCT)n|Simple_repeat|Simple_repeat	115011	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
170916	chr3	194137301	194138180	+	0	NA	exon (NM_005524, exon 4 of 4)	exon (NM_005524, exon 4 of 4)	1592	NM_005524	3280		NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
133112	chr2	112649771	112649930	+	0	NA	intron (NM_005415, intron 4 of 10)	intron (NM_005415, intron 4 of 10)	3911	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
92890	chr17	16439701	16440850	+	0	NA	promoter-TSS (NR_003054)	promoter-TSS (NR_003054)	239	NR_002744	26800		NR_002744	ENSG00000277370	SNORD49A	RNU49|U49|U49A	small nucleolar RNA, C/D box 49A	snoRNA
44534	chr11	107929371	107929830	+	0	NA	intron (NM_017516, intron 1 of 1)	intron (NM_017516, intron 1 of 1)	1152	NM_017516	54734		NM_017516	ENSG00000179331	RAB39A	K28|RAB39	RAB39A, member RAS oncogene family	protein-coding
79124	chr16	216601	217100	+	0	NA	intron (NM_018032, intron 3 of 8)	AluJb|SINE|Alu	12599	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
206172	chr7	28089021	28089280	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-91307	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
111515	chr19	4004571	4004930	+	0	NA	Intergenic	AluJb|SINE|Alu	-2986	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
3351	chr1	15523101	15523300	+	0	NA	intron (NM_032996, intron 1 of 8)	intron (NM_032996, intron 1 of 8)	1015	NM_001229	842		NM_001229	ENSG00000132906	CASP9	APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56	caspase 9	protein-coding
151595	chr22	10952251	10952350	+	0	NA	intron (NR_132320, intron 3 of 8)	L1M4|LINE|L1	9229	NR_132320	102723780		NR_132320		FRG1FP	-	FSHD region gene 1 family member F, pseudogene	pseudo
221421	chr8	123764851	123765150	+	0	NA	Intergenic	L2a|LINE|L2	-3439	NM_144963	157769		NM_144963	ENSG00000176853	FAM91A1	-	family with sequence similarity 91 member A1	protein-coding
70916	chr14	104116571	104117330	+	0	NA	promoter-TSS (NR_029620)	promoter-TSS (NR_029620)	-455	NR_029620	406986		NR_029620	ENSG00000207568	MIR203A	MIR203|MIRN203|hsa-mir-203a|miR-203|miRNA203|mir-203a	microRNA 203a	ncRNA
185534	chr5	131346371	131346730	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA5|LINE|L1	82497	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
161048	chr3	38017121	38017850	+	0	NA	intron (NM_006225, intron 2 of 14)	intron (NM_006225, intron 2 of 14)	7035	NM_001130964	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
176247	chr4	86937551	86938450	+	0	NA	intron (NM_001166693, intron 1 of 20)	intron (NM_001166693, intron 1 of 20)	2998	NM_001166693	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
215461	chr7	157984221	157984580	+	0	NA	intron (NM_130842, intron 10 of 21)	intron (NM_130842, intron 10 of 21)	129815	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
28313	chr10	46268171	46268990	+	0	NA	intron (NR_103827, intron 1 of 4)	intron (NR_103827, intron 1 of 4)	1028	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
94580	chr17	29692001	29692400	+	0	NA	intron (NM_033389, intron 4 of 14)	intron (NM_033389, intron 4 of 14)	69232	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
65024	chr14	39107601	39107900	+	0	NA	Intergenic	Intergenic	-4515	NM_006364	10484		NM_006364	ENSG00000100934	SEC23A	CLSD|hSec23A	SEC23 homolog A, COPII coat complex component	protein-coding
176323	chr4	87848921	87849630	+	0	NA	Intergenic	Intergenic	14572	NM_001291183	56955		NM_020203	ENSG00000152595	MEPE	OF45	matrix extracellular phosphoglycoprotein	protein-coding
169073	chr3	153462371	153462880	+	0	NA	intron (NR_146713, intron 5 of 6)	intron (NR_146713, intron 5 of 6)	-21870	NR_160966	152118		NR_160966	ENSG00000237787	LINC02877	C3orf79	long intergenic non-protein coding RNA 2877	ncRNA
118585	chr19	36309451	36309900	+	0	NA	Intergenic	SST1|Satellite|centr	-1668	NR_029389	100134317		NR_029389		LOC100134317	-	uncharacterized LOC100134317	ncRNA
229179	chr9	114591871	114593750	+	0	NA	intron (NM_004888, intron 2 of 2)	intron (NM_004888, intron 2 of 2)	5041	NM_004888	9550		NM_004888	ENSG00000136888	ATP6V1G1	ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10	ATPase H+ transporting V1 subunit G1	protein-coding
92865	chr17	16384771	16385200	+	0	NA	Intergenic	AluJb|SINE|Alu	3520	NM_001281717	7314		NM_018955	ENSG00000170315	UBB	HEL-S-50	ubiquitin B	protein-coding
217233	chr8	26576701	26578300	+	0	NA	promoter-TSS (NM_001386)	promoter-TSS (NM_001386)	-445	NM_001386	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
29719	chr10	72079101	72080880	+	0	NA	intron (NM_014767, intron 2 of 11)	MIRc|SINE|MIR	8561	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
143825	chr20	32488271	32488630	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	-4960	NM_001351680	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
90453	chr17	1374051	1374930	+	0	NA	intron (NR_024058, intron 1 of 6)	L1MB8|LINE|L1	25732	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
230260	chr9	127908101	127909300	+	0	NA	intron (NM_175040, intron 4 of 4)	intron (NM_175040, intron 4 of 4)	-3352	NR_104629	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
180108	chr5	1254951	1255780	+	0	NA	exon (NM_198253, exon 14 of 16)	exon (NM_198253, exon 14 of 16)	29984	NM_182632	348932		NM_182632	ENSG00000164363	SLC6A18	Xtrp2	solute carrier family 6 member 18	protein-coding
199456	chr6	117616251	117617750	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-14489	NM_020399	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
155734	chr22	39143751	39144900	+	0	NA	intron (NM_001346743, intron 2 of 5)	intron (NM_001346743, intron 2 of 5)	8355	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
204706	chr7	5529201	5530200	+	0	NA	intron (NM_001101, intron 1 of 5)	CpG-25504	901	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
5368	chr1	25380101	25380550	+	0	NA	intron (NM_138618, intron 6 of 8)	MSTD-int|LTR|ERVL-MaLR	40589	NM_138618	6006		NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHCe(152N)|RHE|RHIXB|RHNA|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII|SLC42A4	Rh blood group CcEe antigens	protein-coding
167935	chr3	136186151	136186680	+	0	NA	intron (NM_018133, intron 1 of 1)	MER1A|DNA|hAT-Charlie	8053	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
112101	chr19	5575771	5576130	+	0	NA	Intergenic	Intergenic	-7916	NR_027064								
122154	chr19	48877301	48880000	+	0	NA	Intergenic	MER41E|LTR|ERV1	6258	NM_014330	23645		NM_014330	ENSG00000087074	PPP1R15A	GADD34	protein phosphatase 1 regulatory subunit 15A	protein-coding
101305	chr17	66468771	66469130	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-52096	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
52804	chr12	56753901	56754300	+	0	NA	Intergenic	Intergenic	-1777	NM_000946	5557		NM_000946	ENSG00000198056	PRIM1	PDIL|p49	DNA primase subunit 1	protein-coding
36034	chr11	2922501	2923100	+	0	NA	intron (NM_183233, intron 10 of 10)	intron (NM_183233, intron 10 of 10)	6620	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
107493	chr18	47772601	47772950	+	0	NA	Intergenic	Intergenic	157884	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
67771	chr14	73737871	73738030	+	0	NA	intron (NM_001043318, intron 2 of 11)	AluSz|SINE|Alu	-20797	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
124832	chr2	7729721	7730000	+	0	NA	Intergenic	MIR|SINE|MIR	169795	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
81618	chr16	10770121	10770380	+	0	NA	TTS (NM_002484)	TTS (NM_002484)	26381	NM_001323597	4682		NM_002484	ENSG00000103274	NUBP1	CIAO5|NBP|NBP1|NBP35	NUBP iron-sulfur cluster assembly factor 1, cytosolic	protein-coding
176029	chr4	82360451	82361380	+	0	NA	intron (NM_001003810, intron 1 of 6)	intron (NM_001003810, intron 1 of 6)	13076	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
169379	chr3	160446621	160446980	+	0	NA	intron (NR_148403, intron 1 of 20)	MER1B|DNA|hAT-Charlie	2986	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
179777	chr5	320421	320680	+	0	NA	intron (NR_165159, intron 3 of 13)	L2a|LINE|L2	-1164	NM_001377236	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
181795	chr5	50963051	50963580	+	0	NA	Intergenic	Intergenic	6872	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
33743	chr10	122416121	122416430	+	0	NA	promoter-TSS (NR_037506)	promoter-TSS (NR_037506)	-690	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
32127	chr10	101233371	101234100	+	0	NA	intron (NR_029380, intron 2 of 2)	intron (NR_029380, intron 2 of 2)	4141	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
145185	chr20	38877351	38878050	+	0	NA	intron (NM_001172735, intron 2 of 9)	L1ME1|LINE|L1	-48717	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
73980	chr15	51981551	51982590	+	0	NA	Intergenic	Intergenic	-10269	NM_001286430	123169		NM_138792	ENSG00000166477	LEO1	RDL	LEO1 homolog, Paf1/RNA polymerase II complex component	protein-coding
227259	chr9	89361951	89362280	+	0	NA	non-coding (NR_163888, exon 18 of 18)	non-coding (NR_163888, exon 18 of 18)	43264	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
206404	chr7	31134501	31134730	+	0	NA	Intergenic	Intergenic	82154	NM_001199635	117		NM_001118	ENSG00000078549	ADCYAP1R1	PAC1|PAC1R|PACAPR|PACAPRI	ADCYAP receptor type I	protein-coding
162702	chr3	48993571	48993730	+	0	NA	intron (NM_177939, intron 2 of 8)	AluSx1|SINE|Alu	3409	NM_177939	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
8872	chr1	43530821	43532180	+	0	NA	intron (NM_001329139, intron 1 of 32)	CpG	617	NM_002840	5792		NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase receptor type F	protein-coding
47523	chr12	4153221	4154050	+	0	NA	Intergenic	Intergenic	-120127	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
31630	chr10	97386751	97387250	+	0	NA	intron (NM_015179, intron 8 of 33)	AluY|SINE|Alu	14340	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
155633	chr22	38941071	38941230	+	0	NA	Intergenic	L1M5|LINE|L1	-16372	NM_001193289	100913187		NM_001193289		APOBEC3A_B	A3A|APOBEC3A	APOBEC3A and APOBEC3B deletion hybrid	protein-coding
59282	chr13	24248171	24248530	+	0	NA	intron (NM_001166271, intron 2 of 12)	MIRb|SINE|MIR	6089	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
138086	chr2	202178321	202178650	+	0	NA	intron (NM_001367720, intron 15 of 23)	intron (NM_001367720, intron 15 of 23)	60112	NM_003352	7341		NM_003352	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin like modifier 1	protein-coding
210957	chr7	101390751	101391730	+	0	NA	intron (NM_133457, intron 1 of 12)	intron (NM_133457, intron 1 of 12)	28365	NM_001278563	136227		NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen type XXVI alpha 1 chain	protein-coding
36817	chr11	9689071	9689430	+	0	NA	intron (NM_001297714, intron 1 of 10)	intron (NM_001297714, intron 1 of 10)	25173	NM_015055	23075		NM_015055	ENSG00000133789	SWAP70	HSPC321|SWAP-70	switching B cell complex subunit SWAP70	protein-coding
137500	chr2	197153971	197154330	+	0	NA	intron (NM_153697, intron 2 of 9)	L1ME3Cz|LINE|L1	-43841	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
46889	chr11	134040051	134040350	+	0	NA	non-coding (NR_027276, exon 3 of 3)	non-coding (NR_027276, exon 3 of 3)	7928	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
164559	chr3	63982201	63982880	+	0	NA	intron (NM_001177387, intron 6 of 12)	intron (NM_001177387, intron 6 of 12)	14746	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
67948	chr14	74792251	74793000	+	0	NA	intron (NM_019589, intron 4 of 20)	HAL1|LINE|L1	29309	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
120980	chr19	45721901	45722100	+	0	NA	intron (NM_001329633, intron 1 of 1)	AluSx1|SINE|Alu	1496	NM_001329634	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
13474	chr1	114576621	114577550	+	0	NA	intron (NM_005872, intron 2 of 6)	MSTC|LTR|ERVL-MaLR	4530	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
53069	chr12	57722471	57722730	+	0	NA	Intergenic	AluSz|SINE|Alu	-3640	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
83429	chr16	27262101	27262300	+	0	NA	intron (NM_145080, intron 1 of 7)	AluSx|SINE|Alu	-6005	NR_037184	400512		NR_037184	ENSG00000245888	NSMCE1-DT	-	NSMCE1 divergent transcript	ncRNA
41057	chr11	65487451	65487980	+	0	NA	Intergenic	Intergenic	-10023	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
197848	chr6	88946851	88947530	+	0	NA	intron (NM_001286426, intron 1 of 14)	SVA_F|Retroposon|SVA	16428	NM_003800	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
66579	chr14	63478151	63479450	+	0	NA	intron (NM_006246, intron 2 of 13)	MIRc|SINE|MIR	29438	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
19794	chr1	182460151	182460250	+	0	NA	intron (NM_001137669, intron 4 of 21)	intron (NM_001137669, intron 4 of 21)	10054	NM_001137669	353299		NM_032267	ENSG00000121446	RGSL1	RGSL|RGSL2	regulator of G protein signaling like 1	protein-coding
146337	chr20	49237221	49237980	+	0	NA	intron (NM_017895, intron 14 of 20)	L2b|LINE|L2	18184	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
210607	chr7	100432901	100433450	+	0	NA	intron (NM_019606, intron 2 of 3)	intron (NM_019606, intron 2 of 3)	3322	NM_145030	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
87407	chr16	70576151	70576530	+	0	NA	3' UTR (NM_012426, exon 26 of 26)	3' UTR (NM_012426, exon 26 of 26)	-3555	NM_152456	146433		NM_152456	ENSG00000157368	IL34	C16orf77|IL-34	interleukin 34	protein-coding
131016	chr2	88011901	88012100	+	0	NA	Intergenic	AluJb|SINE|Alu	-26210	NM_001024457	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
163363	chr3	50471351	50471650	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	32134	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
86915	chr16	68076601	68077030	+	0	NA	intron (NM_001271763, intron 13 of 14)	intron (NM_001271763, intron 13 of 14)	-8555	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
206096	chr7	27199851	27200730	+	0	NA	promoter-TSS (NM_000522)	promoter-TSS (NM_000522)	-131	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
215338	chr7	157365451	157365550	+	0	NA	intron (NM_001363676, intron 3 of 6)	intron (NM_001363676, intron 3 of 6)	28496	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
13732	chr1	116808221	116809580	+	0	NA	Intergenic	Intergenic	54470	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
129640	chr2	70141901	70144030	+	0	NA	Intergenic	CpG	-17649	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
224202	chr9	5492651	5492770	+	0	NA	Intergenic	AluJb|SINE|Alu	-17821	NM_025239	80380		NM_025239	ENSG00000197646	PDCD1LG2	B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2	programmed cell death 1 ligand 2	protein-coding
132700	chr2	108988151	108988450	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	920	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
114564	chr19	12896101	12896530	+	0	NA	non-coding (NR_102317, exon 7 of 11)	non-coding (NR_102317, exon 7 of 11)	5155	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
130183	chr2	83342951	83343850	+	0	NA	Intergenic	Intergenic	-179414	NR_146482	101928031		NR_146482	ENSG00000232548	LINC01809	-	long intergenic non-protein coding RNA 1809	ncRNA
229146	chr9	114486671	114486980	+	0	NA	intron (NM_015404, intron 1 of 11)	MIR|SINE|MIR	16390	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
28235	chr10	45433721	45434550	+	0	NA	intron (NM_001256153, intron 7 of 13).2	LTR39|LTR|ERV1	18986	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
156830	chr22	41943121	41944030	+	0	NA	intron (NM_001304373, intron 3 of 3)	intron (NM_001304373, intron 3 of 3)	3179	NM_001304373	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
231580	chr9	131523951	131524250	+	0	NA	TTS (NM_001136114)	TTS (NM_001136114)	7163	NM_031432	83549		NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
173216	chr4	6898151	6898900	+	0	NA	Intergenic	AluY|SINE|Alu	-10919	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
225058	chr9	33226701	33227100	+	0	NA	Intergenic	Intergenic	-13267	NM_014471	27290		NM_014471	ENSG00000122711	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor Kazal type 4	protein-coding
186418	chr5	135566121	135566630	+	0	NA	Intergenic	Intergenic	12616	NM_004887	9547		NM_004887	ENSG00000145824	CXCL14	BMAC|BRAK|KEC|KS1|MIP-2g|MIP2G|NJAC|SCYB14	C-X-C motif chemokine ligand 14	protein-coding
37991	chr11	35043271	35043430	+	0	NA	Intergenic	Intergenic	94682	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
146831	chr20	51409101	51409950	+	0	NA	intron (NM_012340, intron 9 of 10)	L1MC5|LINE|L1	43452	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
200114	chr6	130204421	130204880	+	0	NA	intron (NM_001258275, intron 7 of 13)	intron (NM_001258275, intron 7 of 13)	11235	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
24805	chr10	127101	127300	+	0	NA	Intergenic	MER4A|LTR|ERV1	-2888	NM_001370103	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
24491	chr1	244394801	244395000	+	0	NA	Intergenic	Intergenic	42265	NM_001276349	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
160551	chr3	30681571	30682300	+	0	NA	intron (NM_001024847, intron 6 of 7)	LTR16C|LTR|ERVL	75334	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
186685	chr5	138659351	138659680	+	0	NA	Intergenic	Intergenic	-84114	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
238510	chrX	153662171	153662550	+	0	NA	Intergenic	CpG	10928	NM_001135740	139728		NM_198452	ENSG00000130822	PNCK	BSTK3|CaMK1b	pregnancy up-regulated nonubiquitous CaM kinase	protein-coding
223310	chr8	143810201	143810400	+	0	NA	intron (NM_182706, intron 13 of 36).2	(CCCTGCA)n|Simple_repeat|Simple_repeat	2742	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
101667	chr17	68312571	68312750	+	0	NA	intron (NM_001352901, intron 2 of 11)	intron (NM_001352901, intron 2 of 11)	20525	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
231669	chr9	131674551	131675130	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-23437	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
146516	chr20	49914301	49916400	+	0	NA	promoter-TSS (NR_134564)	promoter-TSS (NR_134564)	179	NM_006038	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
16553	chr1	154965851	154966150	+	0	NA	exon (NM_001130040, exon 10 of 12)	exon (NM_001130040, exon 10 of 12)	-4218	NM_138300	90780		NM_138300	ENSG00000163348	PYGO2	1190004M21Rik	pygopus family PHD finger 2	protein-coding
103856	chr17	79732421	79732700	+	0	NA	intron (NM_178543, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	1617	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
65394	chr14	50785271	50786100	+	0	NA	intron (NM_020921, intron 5 of 30)	intron (NM_020921, intron 5 of 30)	-36112	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
32329	chr10	102230601	102231260	+	0	NA	exon (NM_005029, exon 4 of 4)	exon (NM_005029, exon 4 of 4)	4631	NM_152310	83401		NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
183775	chr5	81817751	81818450	+	0	NA	Intergenic	Intergenic	-66847	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
212063	chr7	115002101	115002300	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	-76758	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
58365	chr12	131683451	131683550	+	0	NA	Intergenic	(TGTTG)n|Simple_repeat|Simple_repeat	-27590	NM_004592	6433		NM_004592	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor SWAP	protein-coding
139318	chr2	219540871	219541030	+	0	NA	exon (NM_024536, exon 3 of 4)	exon (NM_024536, exon 3 of 4)	2147	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
88073	chr16	81474671	81474830	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-20604	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
207385	chr7	44142201	44142400	+	0	NA	promoter-TSS (NM_021223)	promoter-TSS (NM_021223)	-968	NM_021223	58498		NM_021223	ENSG00000106631	MYL7	MYL2A|MYLC2A	myosin light chain 7	protein-coding
195545	chr6	37475001	37475200	+	0	NA	intron (NM_015050, intron 18 of 23)	intron (NM_015050, intron 18 of 23)	24793	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
185086	chr5	119031051	119031730	+	0	NA	intron (NR_134250, intron 1 of 2)	intron (NR_134250, intron 1 of 2)	6271	NR_134249	105379143		NR_134249		DMXL1-DT	-	DMXL1 divergent transcript	ncRNA
71521	chr14	106145721	106146130	+	0	NA	Intergenic	Intergenic	-141749	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
126544	chr2	28586751	28587850	+	0	NA	intron (NM_153021, intron 26 of 57)	intron (NM_153021, intron 26 of 57)	20943	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
75529	chr15	66598221	66598480	+	0	NA	intron (NR_110372, intron 1 of 4)	intron (NR_110372, intron 1 of 4)	16160	NR_110372	102723165		NR_110372	ENSG00000259471	LINC01169	-	long intergenic non-protein coding RNA 1169	ncRNA
210365	chr7	99590351	99590650	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-7767	NM_001195542	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
167502	chr3	129187271	129187430	+	0	NA	Intergenic	AluYb8|SINE|Alu	-3454	NM_001127194	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
58390	chr12	131892571	131893250	+	0	NA	Intergenic	Intergenic	-1712	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
238767	chrX	154355171	154356100	+	0	NA	intron (NM_001456, intron 29 of 46)	intron (NM_001456, intron 29 of 46)	18999	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
205695	chr7	23272821	23273490	+	0	NA	intron (NM_001005340, intron 9 of 10)	intron (NM_001005340, intron 9 of 10)	-26184	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
108769	chr18	77135001	77135200	+	0	NA	Intergenic	Intergenic	-2317	NM_001025101	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
37782	chr11	32422071	32422230	+	0	NA	intron (NR_160306, intron 3 of 9)	intron (NR_160306, intron 3 of 9)	8663	NM_001198552	7490		NM_000378	ENSG00000184937	WT1	AWT1|GUD|NPHS4|WAGR|WIT-2|WT-1|WT33	WT1 transcription factor	protein-coding
190425	chr5	179832051	179832550	+	0	NA	intron (NM_003900, intron 5 of 7).2	intron (NM_003900, intron 5 of 7).2	11395	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
91488	chr17	4898911	4900400	+	0	NA	5' UTR (NM_001145536, exon 1 of 3)	5' UTR (NM_001145536, exon 1 of 3)	119	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
129996	chr2	74041421	74041680	+	0	NA	intron (NM_001366022, intron 2 of 10)	MER112|DNA|hAT-Charlie	38858	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
233648	chrX	911401	911980	+	0	NA	Intergenic	AluY|SINE|Alu	287346	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
88286	chr16	83953951	83954280	+	0	NA	intron (NM_182981, intron 1 of 5)	MIR1_Amn|SINE|MIR	875	NM_182981	29948		NM_013370	ENSG00000140961	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
67251	chr14	68987021	68987350	+	0	NA	intron (NR_073422, intron 3 of 3)	Charlie29a|DNA|hAT-Charlie	7503	NR_073422	161159		NR_073422	ENSG00000259062	ACTN1-DT	ACTN1-AS1|C14orf84	ACTN1 divergent transcript	ncRNA
108835	chr18	79071001	79071580	+	0	NA	intron (NM_198531, intron 1 of 29)	L1MDb|LINE|L1	1896	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
83501	chr16	27430871	27431280	+	0	NA	intron (NM_181078, intron 2 of 8)	intron (NM_181078, intron 2 of 8)	3804	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
214737	chr7	151047921	151048180	+	0	NA	promoter-TSS (NM_004769)	promoter-TSS (NM_004769)	-242	NM_020322	9311		NM_004769	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid sensing ion channel subunit 3	protein-coding
159131	chr3	12643371	12643530	+	0	NA	intron (NM_001354691, intron 1 of 16)	intron (NM_001354691, intron 1 of 16)	20058	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
174153	chr4	36250971	36251130	+	0	NA	intron (NR_122079, intron 3 of 4)	Kanga1|DNA|TcMar-Tc2	-5468	NR_122080	439933		NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
98304	chr17	46239301	46239800	+	0	NA	Intergenic	MER66B|LTR|ERV1	-14183	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
213257	chr7	134514371	134515000	+	0	NA	Intergenic	Intergenic	-12882	NM_020299	57016		NM_020299	ENSG00000198074	AKR1B10	AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI	aldo-keto reductase family 1 member B10	protein-coding
195827	chr6	41332321	41332850	+	0	NA	Intergenic	Intergenic	-3023	NM_004828	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
60005	chr13	32467451	32467650	+	0	NA	intron (NM_001320836, intron 6 of 9)	AluSz|SINE|Alu	30942	NR_051980	100462953		NR_051980		MICOS10P1	CG012|MINOS1P1|N4BP2L2-IT|N4BP2L2-IT1|N4BP2L2IT1	MICOS10 pseudogene 1	pseudo
5197	chr1	24958601	24959430	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	5995	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
212369	chr7	127766671	127767630	+	0	NA	intron (NM_014390, intron 10 of 23)	intron (NM_014390, intron 10 of 23)	114956	NM_014390	27044		NM_014390	ENSG00000197157	SND1	TDRD11|TSN|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
153575	chr22	26669001	26669680	+	0	NA	non-coding (NR_003491, exon 5 of 5)	non-coding (NR_003491, exon 5 of 5)	-3503	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
123280	chr19	53541371	53541530	+	0	NA	intron (NM_001317113, intron 2 of 4)	FRAM|SINE|Alu	2662	NM_001253800	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
17970	chr1	160452051	160452150	+	0	NA	Intergenic	Intergenic	51536	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
193187	chr6	29730471	29732050	+	0	NA	intron (NR_026972, intron 4 of 5).3	(ATAG)n|Simple_repeat|Simple_repeat	7826	NM_001098478	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
149130	chr21	17719221	17719480	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	73159	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
129968	chr2	73982371	73982980	+	0	NA	Intergenic	Intergenic	-1236	NR_104029	100874048		NR_104029		DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
192429	chr6	24885151	24885450	+	0	NA	intron (NM_001286446, intron 1 of 13)	AluJo|SINE|Alu	-7935	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
177961	chr4	139019621	139019880	+	0	NA	intron (NM_012118, intron 1 of 2)	intron (NM_012118, intron 1 of 2)	3969	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
135941	chr2	171930271	171930630	+	0	NA	intron (NR_027862, intron 2 of 9)	AluJb|SINE|Alu	7989	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
12986	chr1	110904051	110904480	+	0	NA	Intergenic	L1M1|LINE|L1	31117	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
71670	chr15	19413151	19413450	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-869444	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
85053	chr16	31959901	31960900	+	0	NA	Intergenic	Intergenic	86593	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
114105	chr19	11128201	11128600	+	0	NA	intron (NM_001195800, intron 14 of 15)	intron (NM_001195800, intron 14 of 15)	14926	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
235191	chrX	41339121	41340400	+	0	NA	TTS (NR_126094)	TTS (NR_126094)	5594	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
170662	chr3	187367601	187369050	+	0	NA	promoter-TSS (NM_022147)	promoter-TSS (NM_022147)	-60	NM_022147	64108		NM_022147	ENSG00000136514	RTP4	IFRG28|Z3CXXC4	receptor transporter protein 4	protein-coding
107215	chr18	36168421	36168880	+	0	NA	intron (NR_137173, intron 19 of 20)	THE1C|LTR|ERVL-MaLR	18785	NR_134605	101927809		NR_134605	ENSG00000260552	COSMOC	-	cell fate and sterol metabolism associated divergent transcript of MOCOS	ncRNA
86727	chr16	67579871	67580430	+	0	NA	intron (NM_001191022, intron 2 of 9)	L2|LINE|L2	9377	NM_001363916	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
233960	chrX	2629591	2631950	+	0	NA	intron (NR_033380, intron 8 of 8)	intron (NR_033380, intron 8 of 8)	-15423	NR_037842	100359394		NR_037842	ENSG00000230542	LINC00102	NCRNA00102	long intergenic non-protein coding RNA 102	ncRNA
216894	chr8	22681551	22682050	+	0	NA	Intergenic	L2a|LINE|L2	10564	NM_001199880	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
181822	chr5	52797571	52797930	+	0	NA	intron (NM_181501, intron 1 of 28)	MIR|SINE|MIR	9834	NM_015946	53918		NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota mRNA surveillance and ribosome rescue factor	protein-coding
206068	chr7	27166401	27167100	+	0	NA	intron (NR_037940, intron 1 of 2)	CpG-25664	-1213	NM_152739	3205		NM_002142	ENSG00000078399	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding
68012	chr14	75113971	75114280	+	0	NA	intron (NM_001329238, intron 7 of 21)	intron (NM_001329238, intron 7 of 21)	12923	NM_001329238	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
69597	chr14	97393221	97394080	+	0	NA	Intergenic	Intergenic	-65166	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
40799	chr11	64904121	64904580	+	0	NA	intron (NM_015104, intron 24 of 40)	AluSg|SINE|Alu	-1895	NR_106807	102466727		NR_106807	ENSG00000274314	MIR6749	hsa-mir-6749	microRNA 6749	ncRNA
239288	chrY	14300901	14301450	+	0	NA	Intergenic	L1MB2|LINE|L1	-221441	NM_001365591	22829		NM_014893	ENSG00000165246	NLGN4Y	HNL4Y	neuroligin 4 Y-linked	protein-coding
117803	chr19	29887321	29887580	+	0	NA	Intergenic	Intergenic	-36207	NM_001252641	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
209522	chr7	77026321	77026650	+	0	NA	intron (NM_001351351, intron 5 of 7)	intron (NM_001351351, intron 5 of 7)	5876	NM_001351351	102723849		NM_001351351	ENSG00000186645	SPDYE17	-	speedy/RINGO cell cycle regulator family member E17	protein-coding
64905	chr14	35399601	35400800	+	0	NA	Intergenic	Intergenic	4549	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
169346	chr3	160312101	160312300	+	0	NA	intron (NR_148403, intron 10 of 20)	MER91C|DNA|hAT-Tip100	71566	NM_001190242	57560		NM_020800	ENSG00000068885	IFT80	ATD2|CFAP167|FAP167|SRTD2|WDR56	intraflagellar transport 80	protein-coding
54153	chr12	76558451	76559300	+	0	NA	intron (NM_001319652, intron 1 of 25)	intron (NM_001319652, intron 1 of 25)	896	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
3881	chr1	17010471	17010950	+	0	NA	intron (NM_001141974, intron 1 of 26)	MIRb|SINE|MIR	1218	NM_001141974	23400		NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9|SPG78	ATPase cation transporting 13A2	protein-coding
76074	chr15	72474901	72475800	+	0	NA	intron (NM_005744, intron 1 of 13)	CpG	1020	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
177855	chr4	128069051	128069150	+	0	NA	intron (NM_178043, intron 1 of 10)	intron (NM_178043, intron 1 of 10)	7788	NM_032239	55132		NM_018078	ENSG00000138709	LARP1B	LARP2	La ribonucleoprotein 1B	protein-coding
201533	chr6	149147421	149148700	+	0	NA	Intergenic	AluJo|SINE|Alu	-69864	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
21067	chr1	203299021	203299730	+	0	NA	non-coding (NR_034150, exon 3 of 3)	non-coding (NR_034150, exon 3 of 3)	5950	NR_034150	730227		NR_034150	ENSG00000233791	BTG2-DT	LINC01136	BTG2 divergent transcript	ncRNA
123334	chr19	53659451	53659550	+	0	NA	Intergenic	Intergenic	-7173	NR_030181	574459		NR_030181	ENSG00000207644	MIR512-2	MIRN512-2|mir-512-2	microRNA 512-2	ncRNA
138534	chr2	207515651	207515950	+	0	NA	Intergenic	Intergenic	-14162	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
163110	chr3	50119051	50119150	+	0	NA	TTS (NM_005778)	TTS (NM_005778)	-18112	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
43204	chr11	75422351	75422730	+	0	NA	TTS (NM_001256802)	TTS (NM_001256802)	8089	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
113054	chr19	8148701	8149630	+	0	NA	promoter-TSS (NM_001321431)	promoter-TSS (NM_001321431)	-296	NM_001321431	84467		NM_032447	ENSG00000142449	FBN3	-	fibrillin 3	protein-coding
100130	chr17	58381471	58381630	+	0	NA	intron (NM_017763, intron 2 of 9)	intron (NM_017763, intron 2 of 9)	21171	NM_001305545	54894		NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
8522	chr1	40992751	40992850	+	0	NA	intron (NR_125440, intron 7 of 17)	AluSx|SINE|Alu	4281	NM_001301237	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
123001	chr19	50959971	50960280	+	0	NA	intron (NM_001012964, intron 5 of 5)	intron (NM_001012964, intron 5 of 5)	-7087	NM_012427	25818		NM_012427	ENSG00000167754	KLK5	KLK-L2|KLKL2|SCTE	kallikrein related peptidase 5	protein-coding
44115	chr11	96021301	96021500	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-97293	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
77484	chr15	84573221	84573480	+	0	NA	intron (NR_038273, intron 3 of 3)	AluJr|SINE|Alu	2216	NR_038273	100506874		NR_038273		LINC00933	-	long intergenic non-protein coding RNA 933	ncRNA
226529	chr9	71908621	71909230	+	0	NA	intron (NM_016014, intron 1 of 4)	MIRc|SINE|MIR	2268	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
143792	chr20	32453351	32453650	+	0	NA	intron (NM_080616, intron 4 of 7)	intron (NM_080616, intron 4 of 7)	29990	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
39045	chr11	47861871	47862230	+	0	NA	Intergenic	AluSg|SINE|Alu	-13506	NM_015231	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
189833	chr5	177089651	177090380	+	0	NA	intron (NM_022963, intron 1 of 15)	intron (NM_022963, intron 1 of 15)	465	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
200636	chr6	136922041	136923350	+	0	NA	exon (NM_001008783, exon 1 of 2)	exon (NM_001008783, exon 1 of 2)	394	NM_001008783	340146		NM_001008783	ENSG00000182747	SLC35D3	FRCL1	solute carrier family 35 member D3	protein-coding
153462	chr22	25398371	25399150	+	0	NA	intron (NM_001135772, intron 1 of 6)	intron (NM_001135772, intron 1 of 6)	6648	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
171664	chr3	197678621	197679080	+	0	NA	intron (NM_014687, intron 16 of 19)	intron (NM_014687, intron 16 of 19)	-4274	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
32621	chr10	103664471	103664630	+	0	NA	intron (NM_001365079, intron 1 of 8)	intron (NM_001365079, intron 1 of 8)	13665	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
197867	chr6	89085721	89086450	+	0	NA	TTS (NM_006813)	TTS (NM_006813)	5334	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
180824	chr5	32489651	32490130	+	0	NA	Intergenic	Intergenic	-45150	NR_144318	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
14723	chr1	145966201	145966930	+	0	NA	intron (NM_032305, intron 1 of 7)	AluSp|SINE|Alu	1875	NM_032305	84265		NM_032305	ENSG00000121851	POLR3GL	RPC32HOM|SOFM|flj32422	RNA polymerase III subunit GL	protein-coding
122715	chr19	49970421	49970680	+	0	NA	exon (NM_001348364, exon 3 of 9)	exon (NM_001348364, exon 3 of 9)	886	NM_001348364	400709		NM_001348364	ENSG00000161643	SIGLEC16	SIGLECP16|Siglec-P16	sialic acid binding Ig like lectin 16	protein-coding
66090	chr14	59467021	59467400	+	0	NA	Intergenic	Intergenic	-1830	NM_022571	64582		NM_022571	ENSG00000181619	GPR135	HUMNPIIY20	G protein-coupled receptor 135	protein-coding
162381	chr3	48056301	48057150	+	0	NA	intron (NM_001384729, intron 1 of 20)	SVA_F|Retroposon|SVA	32123	NM_001384861	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
196923	chr6	52394021	52395150	+	0	NA	intron (NM_133367, intron 1 of 1)	MER47B|DNA|TcMar-Tigger	-25757	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
163228	chr3	50259001	50259200	+	0	NA	3' UTR (NM_001166425, exon 9 of 9)	3' UTR (NM_001166425, exon 9 of 9)	8271	NR_110702	101928931		NR_110702		SEMA3B-AS1	-	SEMA3B antisense RNA 1 (head to head)	ncRNA
78350	chr15	91271601	91271950	+	0	NA	intron (NM_001167580, intron 8 of 11)	intron (NM_001167580, intron 8 of 11)	169979	NM_001323039	9899		NM_014848	ENSG00000185518	SV2B	HsT19680|SLC22B2	synaptic vesicle glycoprotein 2B	protein-coding
64229	chr14	23076021	23076280	+	0	NA	intron (NM_014977, intron 8 of 18)	intron (NM_014977, intron 8 of 18)	-4581	NM_001164816	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
86630	chr16	67433751	67434400	+	0	NA	intron (NM_000196, intron 1 of 4)	MIRb|SINE|MIR	2954	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
79302	chr16	550271	550680	+	0	NA	intron (NM_005632, intron 7 of 13)	intron (NM_005632, intron 7 of 13)	7198	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
228505	chr9	100215971	100216480	+	0	NA	intron (NM_001318381, intron 4 of 17)	HERVL40-int|LTR|ERVL	116982	NM_014425	27130		NM_014425	ENSG00000119509	INVS	INV|NPH2|NPHP2	inversin	protein-coding
233305	chr9	137387401	137388080	+	0	NA	intron (NM_017820, intron 2 of 21)	intron (NM_017820, intron 2 of 21)	35422	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
135675	chr2	168580801	168581000	+	0	NA	intron (NM_203463, intron 3 of 9)	L1ME3B|LINE|L1	-2043	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
53575	chr12	67663151	67663450	+	0	NA	3' UTR (NM_003583, exon 2 of 2)	3' UTR (NM_003583, exon 2 of 2)	14555	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
45449	chr11	118446621	118447080	+	0	NA	intron (NM_001197104, intron 1 of 35)	L2c|LINE|L2	10358	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
41441	chr11	66080101	66080980	+	0	NA	intron (NM_018026, intron 1 of 23)	MIRb|SINE|MIR	10268	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
175921	chr4	80207121	80207380	+	0	NA	Intergenic	CpG	9747	NM_001099403	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
44476	chr11	105034851	105035830	+	0	NA	promoter-TSS (NM_001257118)	promoter-TSS (NM_001257118)	-183	NM_033295	834		NM_001223	ENSG00000137752	CASP1	ICE|IL1BC|P45	caspase 1	protein-coding
62496	chr13	99422001	99422300	+	0	NA	Intergenic	Intergenic	66019	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
79971	chr16	1785301	1785700	+	0	NA	intron (NM_001284501, intron 2 of 7)	intron (NM_001284501, intron 2 of 7)	2540	NR_104318	10101		NM_012225	ENSG00000095906	NUBP2	CFD1|CIAO6|NBP 2|NUBP1	NUBP iron-sulfur cluster assembly factor 2, cytosolic	protein-coding
81817	chr16	11556851	11558000	+	0	NA	intron (NR_024320, intron 1 of 3)	L1ME3A|LINE|L1	28948	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
169891	chr3	177554951	177555380	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	113244	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
66065	chr14	58397971	58398130	+	0	NA	intron (NM_207377, intron 2 of 4)	intron (NM_207377, intron 2 of 4)	2120	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
12262	chr1	100454171	100454730	+	0	NA	intron (NM_001319212, intron 7 of 13)	intron (NM_001319212, intron 7 of 13)	-83689	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
155082	chr22	37562651	37562750	+	0	NA	intron (NM_152243, intron 1 of 2)	intron (NM_152243, intron 1 of 2)	2220	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
57616	chr12	122486451	122486750	+	0	NA	intron (NM_017612, intron 5 of 13)	AluSx1|SINE|Alu	14332	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
28058	chr10	43268071	43268230	+	0	NA	Intergenic	L2a|LINE|L2	-1085	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
190316	chr5	179611501	179613090	+	0	NA	intron (NM_001305388, intron 3 of 5)	AluYa5|SINE|Alu	-8554	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
121803	chr19	47914701	47915230	+	0	NA	Intergenic	L1MC4|LINE|L1	1914	NR_024217	100170218		NR_024217		SNAR-C2	-	small NF90 (ILF3) associated RNA C2	snRNA
36618	chr11	7192921	7193000	+	0	NA	Intergenic	L1MA9|LINE|L1	-41806	NR_031683	100313774		NR_031683	ENSG00000221703	MIR302E	MIRN302E	microRNA 302e	ncRNA
203016	chr6	163438701	163439300	+	0	NA	intron (NM_206854, intron 1 of 6)	Tigger3b|DNA|TcMar-Tigger	24282	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
168364	chr3	141895851	141896530	+	0	NA	intron (NM_001679, intron 1 of 6)	AluJo|SINE|Alu	19547	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
14881	chr1	146538771	146539300	+	0	NA	intron (NR_103556, intron 10 of 55)	intron (NR_103556, intron 10 of 55)	52703	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
148918	chr21	9124401	9124850	+	0	NA	intron (NR_038329, intron 2 of 2)	intron (NR_038329, intron 2 of 2)	5136	NR_038327	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
81034	chr16	4288271	4289050	+	0	NA	Intergenic	Intergenic	-15637	NM_003223	7023		NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding
144058	chr20	33670521	33670780	+	0	NA	intron (NM_031232, intron 3 of 11)	intron (NM_031232, intron 3 of 11)	3707	NM_001024675	170487		NM_001024675	ENSG00000288649	ACTL10	C20orf134|dJ63M2.2	actin like 10	protein-coding
136076	chr2	173145421	173145880	+	0	NA	intron (NM_133646, intron 2 of 11)	L1ME2|LINE|L1	69804	NM_016653	51776		NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
209726	chr7	87148251	87149550	+	0	NA	Intergenic	Intergenic	3417	NR_136252	101927420		NR_136252	ENSG00000224046	DMTF1-AS1	-	DMTF1 antisense RNA 1	ncRNA
113830	chr19	10617701	10618100	+	0	NA	intron (NM_001145056, intron 1 of 21)	intron (NM_001145056, intron 1 of 21)	-7653	NM_001363611	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
145202	chr20	38893301	38894580	+	0	NA	intron (NM_001172735, intron 3 of 9)	intron (NM_001172735, intron 3 of 9)	-32477	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
95114	chr17	34982001	34982530	+	0	NA	intron (NM_013975, intron 1 of 19)	intron (NM_013975, intron 1 of 19)	1753	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
183498	chr5	79303201	79303400	+	0	NA	intron (NM_152405, intron 6 of 10)	FLAM_C|SINE|Alu	67169	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
171763	chr3	198220271	198221050	+	0	NA	non-coding (NR_146164, exon 18 of 18)	non-coding (NR_146164, exon 18 of 18)	67454	NR_146164	728262		NM_001145248	ENSG00000290937	FAM157A	GTF2IP18	family with sequence similarity 157 member A	ncRNA
96347	chr17	40066171	40067700	+	0	NA	intron (NM_199334, intron 1 of 8)	MIR|SINE|MIR	3970	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
176296	chr4	87352451	87352550	+	0	NA	intron (NM_016245, intron 5 of 6)	L1HS|LINE|L1	-29618	NM_001136230	345275		NM_178135	ENSG00000170509	HSD17B13	FLDP|HMFN0376|NIIL497|SCDR9|SDR16C3	hydroxysteroid 17-beta dehydrogenase 13	protein-coding
12591	chr1	109027751	109028380	+	0	NA	intron (NM_001142550, intron 1 of 14)	intron (NM_001142550, intron 1 of 14)	14037	NM_001142551	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
141988	chr20	1391751	1392100	+	0	NA	TTS (NR_106929)	TTS (NR_106929)	1036	NR_106929	102465524		NR_106929	ENSG00000284436	MIR6869	hsa-mir-6869	microRNA 6869	ncRNA
5284	chr1	25101471	25102330	+	0	NA	Intergenic	MIR3|SINE|MIR	78397	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
73482	chr15	43691101	43691300	+	0	NA	Intergenic	AluJb|SINE|Alu	-1169	NR_146339	110006325		NR_146339		PPIP5K1P1-CATSPER2	-	PPIP5K1P1-CATSPER2 readthrough	pseudo
125818	chr2	24164371	24164630	+	0	NA	intron (NR_111929, intron 5 of 5)	intron (NR_111929, intron 5 of 5)	-10553	NM_001040710	653140		NM_001040710	ENSG00000186453	FAM228A	C2orf84	family with sequence similarity 228 member A	protein-coding
14188	chr1	121558071	121558230	+	0	NA	intron (NR_003955, intron 3 of 7)	(TTTCC)n|Simple_repeat|Simple_repeat	39038	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
47202	chr12	819401	819600	+	0	NA	intron (NM_018979, intron 2 of 27)	Tigger4a|DNA|TcMar-Tigger	66577	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
226390	chr9	70398031	70399480	+	0	NA	intron (NM_001206, intron 1 of 1)	AluSx1|SINE|Alu	15902	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
79748	chr16	1346401	1347330	+	0	NA	exon (NM_003933, exon 28 of 34)	exon (NM_003933, exon 28 of 34)	5013	NM_001001410	115939		NM_001001410	ENSG00000007520	TSR3	C16orf42|HsTsr3	TSR3 ribosome maturation factor	protein-coding
143596	chr20	31696571	31697130	+	0	NA	intron (NR_134257, intron 1 of 2)	AluSx1|SINE|Alu	-24657	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
172611	chr4	2507921	2508350	+	0	NA	intron (NM_001185009, intron 5 of 8)	AluJb|SINE|Alu	-27240	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
61694	chr13	74055871	74056230	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	77879	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
213814	chr7	141067521	141067850	+	0	NA	Intergenic	L1HS|LINE|L1	-6379	NM_001195278	100507421		NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
105171	chr17	82269251	82269950	+	0	NA	intron (NM_139062, intron 1 of 9)	intron (NM_139062, intron 1 of 9)	4100	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
92423	chr17	8408571	8408730	+	0	NA	Intergenic	Intergenic	-10823	NM_001146684	643904		NM_001146684	ENSG00000189051	RNF222	-	ring finger protein 222	protein-coding
56588	chr12	117857721	117858030	+	0	NA	intron (NM_173598, intron 2 of 19)	intron (NM_173598, intron 2 of 19)	111115	NM_173598	283455		NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
228164	chr9	97009521	97009780	+	0	NA	intron (NM_001355229, intron 1 of 4)	AluSz|SINE|Alu	3955	NM_001355229	84278		NM_001355228	ENSG00000290770	MFSD14CP	HIATL2|MFSD14C	major facilitator superfamily domain containing 14C, pseudogene	pseudo
92375	chr17	8224721	8225180	+	0	NA	promoter-TSS (NR_026951)	promoter-TSS (NR_026951)	-907	NR_026951	284029		NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324|RNA00324|TP53LC03	long intergenic non-protein coding RNA 324	ncRNA
210650	chr7	100475371	100476650	+	0	NA	intron (NM_001303043, intron 2 of 4)	intron (NM_001303043, intron 2 of 4)	3204	NM_030935	81628		NM_030935	ENSG00000166925	TSC22D4	SPACDR|THG-1|THG1|TILZ2	TSC22 domain family member 4	protein-coding
183466	chr5	79246221	79246480	+	0	NA	intron (NM_152405, intron 1 of 10)	intron (NM_152405, intron 1 of 10)	10219	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
176268	chr4	87017851	87018230	+	0	NA	intron (NM_001313960, intron 1 of 17)	intron (NM_001313960, intron 1 of 17)	11039	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
110156	chr19	1642121	1642380	+	0	NA	intron (NM_003200, intron 3 of 18)	intron (NM_003200, intron 3 of 18)	10365	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
161067	chr3	38079371	38079730	+	0	NA	intron (NM_001321153, intron 6 of 36)	HERVH-int|LTR|ERV1	40342	NM_007335	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
27647	chr10	32981801	32982590	+	0	NA	Intergenic	Intergenic	-23965	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
17734	chr1	158959751	158959850	+	0	NA	intron (NM_198930, intron 7 of 7)	intron (NM_198930, intron 7 of 7)	28248	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
13536	chr1	115067901	115068300	+	0	NA	intron (NM_001308315, intron 2 of 6)	intron (NM_001308315, intron 2 of 6)	21400	NM_001308315	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
74193	chr15	55743471	55743630	+	0	NA	promoter-TSS (NM_173814)	promoter-TSS (NM_173814)	-398	NM_173814	283659		NM_173814	ENSG00000166450	PRTG	IGDCC5	protogenin	protein-coding
151826	chr22	18415401	18415600	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-5884	NR_165629	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
166190	chr3	111709571	111709930	+	0	NA	intron (NM_153268, intron 2 of 3)	L2a|LINE|L2	-22746	NM_001134437	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
120687	chr19	45156501	45156700	+	0	NA	intron (NM_198478, intron 2 of 3)	intron (NM_198478, intron 2 of 3)	3550	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
156054	chr22	39986101	39986500	+	0	NA	Intergenic	Intergenic	-8654	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
210900	chr7	101180001	101180900	+	0	NA	promoter-TSS (NM_198571)	promoter-TSS (NM_198571)	-157	NM_198571	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
143568	chr20	31643071	31643230	+	0	NA	intron (NM_032609, intron 3 of 4)	L2a|LINE|L2	5238	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
207559	chr7	44858071	44858500	+	0	NA	Intergenic	Intergenic	-10159	NM_138635	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
56312	chr12	112463471	112463630	+	0	NA	intron (NM_002834, intron 6 of 15)	intron (NM_002834, intron 6 of 15)	44603	NM_001330437	5781		NM_002834	ENSG00000179295	PTPN11	BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2	protein tyrosine phosphatase non-receptor type 11	protein-coding
197438	chr6	73675301	73675730	+	0	NA	Intergenic	AluJr|SINE|Alu	-20570	NM_001159587	135228		NM_133493	ENSG00000156535	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
137557	chr2	197239151	197239800	+	0	NA	intron (NM_153697, intron 1 of 9)	AluJb|SINE|Alu	41484	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
116462	chr19	18086521	18087530	+	0	NA	promoter-TSS (NM_001290023)	promoter-TSS (NM_001290023)	-91	NM_153701	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
30157	chr10	74180401	74181230	+	0	NA	intron (NM_001369124, intron 1 of 9)	AluSx3|SINE|Alu	4052	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
146712	chr20	50586101	50586300	+	0	NA	TTS (NR_030375)	TTS (NR_030375)	414	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
222181	chr8	133025951	133026630	+	0	NA	intron (NM_003235, intron 40 of 47)	intron (NM_003235, intron 40 of 47)	20291	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
208182	chr7	64882351	64883130	+	0	NA	5' UTR (NM_001385643, exon 1 of 6)	5' UTR (NM_001385643, exon 1 of 6)	227	NM_001385645	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
63431	chr13	114101121	114101600	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-23405	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
48994	chr12	13233121	13233380	+	0	NA	Intergenic	AluJo|SINE|Alu	36524	NM_001423	2012		NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
80245	chr16	2204921	2206500	+	0	NA	non-coding (NR_147907, exon 1 of 8)	non-coding (NR_147907, exon 1 of 8)	256	NM_001352059	64223		NM_022372	ENSG00000167965	MLST8	GBL|GbetaL|LST8|POP3|WAT1	MTOR associated protein, LST8 homolog	protein-coding
120719	chr19	45308001	45308400	+	0	NA	intron (NM_001824, intron 6 of 7)	intron (NM_001824, intron 6 of 7)	14675	NM_001824	1158		NM_001824	ENSG00000104879	CKM	CKMM|CPK-M|M-CK	creatine kinase, M-type	protein-coding
25078	chr10	3852251	3853330	+	0	NA	Intergenic	Intergenic	18840	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
167706	chr3	130849871	130850680	+	0	NA	promoter-TSS (NM_001199182)	promoter-TSS (NM_001199182)	-320	NM_001378511	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
201112	chr6	142861371	142861530	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	83726	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
32570	chr10	103445901	103446100	+	0	NA	TTS (NM_015916)	TTS (NM_015916)	6370	NR_046344	51063		NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator family member 2	protein-coding
116575	chr19	18243621	18243930	+	0	NA	intron (NM_000923, intron 1 of 15)	intron (NM_000923, intron 1 of 15)	4425	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
124442	chr19	58501301	58502730	+	0	NA	intron (NM_001321196, intron 3 of 9)	intron (NM_001321196, intron 3 of 9)	9977	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
75370	chr15	65630601	65631030	+	0	NA	intron (NM_001301032, intron 1 of 7)	AluSz|SINE|Alu	6860	NM_001301031	9187		NM_004727	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 member 1	protein-coding
198060	chr6	90216201	90217030	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	80228	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
5952	chr1	26893851	26894150	+	0	NA	intron (NM_022078, intron 3 of 6)	intron (NM_022078, intron 3 of 6)	-3717	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
77819	chr15	88627121	88628280	+	0	NA	intron (NM_022767, intron 2 of 3)	Tigger9b|DNA|TcMar-Tigger	6360	NM_022767	64782		NM_022767	ENSG00000181026	AEN	ISG20L1|pp12744	apoptosis enhancing nuclease	protein-coding
141549	chr2	241354901	241357080	+	0	NA	promoter-TSS (NM_014808)	promoter-TSS (NM_014808)	-295	NM_001282984	9855		NM_014808	ENSG00000006607	FARP2	FIR|FRG|PLEKHC3	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein-coding
33784	chr10	123043321	123043700	+	0	NA	intron (NM_001330174, intron 5 of 9)	intron (NM_001330174, intron 5 of 9)	34504	NM_001330174	36		NM_001609	ENSG00000196177	ACADSB	2-MEBCAD|ACAD7|SBCAD	acyl-CoA dehydrogenase short/branched chain	protein-coding
37586	chr11	19283721	19284250	+	0	NA	Intergenic	Intergenic	-42330	NM_001256372	79733		NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
204935	chr7	6256551	6257150	+	0	NA	intron (NM_004227, intron 1 of 12)	intron (NM_004227, intron 1 of 12)	15774	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
192204	chr6	17715021	17715550	+	0	NA	Intergenic	Intergenic	8242	NR_134618	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
84557	chr16	30582901	30583100	+	0	NA	exon (NM_152458, exon 3 of 3)	exon (NM_152458, exon 3 of 3)	2697	NM_152458	146540		NM_152458	ENSG00000197162	ZNF785	ZNF688	zinc finger protein 785	protein-coding
88962	chr16	87855321	87855580	+	0	NA	intron (NM_003486, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	1554	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
204502	chr7	4777251	4777350	+	0	NA	intron (NR_157345, intron 1 of 16)	intron (NR_157345, intron 1 of 16)	1677	NM_014855	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
148692	chr21	6314021	6314280	+	0	NA	Intergenic	Intergenic	-46814	NM_001322036	102724951		NM_001322036	ENSG00000276077	LINC03105	-	long intergenic non-protein coding RNA 3105	ncRNA
136192	chr2	174556301	174557430	+	0	NA	Intergenic	AluJr|SINE|Alu	1207	NR_004394	26827		NR_004394	ENSG00000206625	RNU6-1	RNU6|RNU6A|U6|U6-1	RNA, U6 small nuclear 1	snRNA
191189	chr6	5256661	5257250	+	0	NA	intron (NR_104417, intron 1 of 3)	L2c|LINE|L2	3995	NM_001318782	57128		NM_020408	ENSG00000214113	LYRM4	C6orf149|CGI-203|COXPD19|ISD11	LYR motif containing 4	protein-coding
18836	chr1	167686351	167686650	+	0	NA	intron (NM_052862, intron 3 of 6)	intron (NM_052862, intron 3 of 6)	-35482	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
226738	chr9	76007751	76008050	+	0	NA	intron (NM_006200, intron 3 of 20)	AluJb|SINE|Alu	117227	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
31727	chr10	97689821	97690080	+	0	NA	Intergenic	Intergenic	-2709	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
211259	chr7	102679401	102680380	+	0	NA	non-coding (NR_146066, exon 12 of 12)	non-coding (NR_146066, exon 12 of 12)	-8155	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
2518	chr1	9706921	9707480	+	0	NA	intron (NM_001350234, intron 2 of 23)	L1ME3Cz|LINE|L1	15733	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
4324	chr1	20484971	20485800	+	0	NA	5' UTR (NM_018584, exon 1 of 2)	5' UTR (NM_018584, exon 1 of 2)	825	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
164385	chr3	58305801	58307250	+	0	NA	promoter-TSS (NM_001098783)	promoter-TSS (NM_001098783)	5	NM_001348712	109703458		NM_001348712	ENSG00000255154	HTD2	-	hydroxyacyl-thioester dehydratase type 2	protein-coding
48068	chr12	7128651	7128750	+	0	NA	intron (NM_001329454, intron 3 of 5)	intron (NM_001329454, intron 3 of 5)	189	NM_031491	83758		NM_031491	ENSG00000139194	RBP5	CRBP-III|CRBP3|CRBPIII|HRBPiso	retinol binding protein 5	protein-coding
206047	chr7	27147501	27148300	+	0	NA	promoter-TSS (NM_024014)	promoter-TSS (NM_024014)	-126	NM_024014	3203		NM_024014	ENSG00000106006	HOXA6	HOX1|HOX1.2|HOX1B	homeobox A6	protein-coding
136049	chr2	172554351	172554680	+	0	NA	promoter-TSS (NR_103731)	promoter-TSS (NR_103731)	-858	NR_103731	5163		NM_002610	ENSG00000152256	PDK1	-	pyruvate dehydrogenase kinase 1	protein-coding
14206	chr1	143185951	143186050	+	0	NA	Intergenic	Intergenic	236592	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
198119	chr6	90393071	90393650	+	0	NA	Intergenic	Intergenic	80618	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
229197	chr9	114690671	114691800	+	0	NA	Intergenic	Intergenic	-9043	NM_001371884	100505478		NM_001199233	ENSG00000230601	TEX48	-	testis expressed 48	protein-coding
124711	chr2	3597401	3597800	+	0	NA	intron (NM_024027, intron 1 of 6)	intron (NM_024027, intron 1 of 6)	2488	NM_024027	78989		NM_024027	ENSG00000118004	COLEC11	3MC2|CL-11|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
162506	chr3	48582051	48582350	+	0	NA	intron (NM_000094, intron 47 of 118)	intron (NM_000094, intron 47 of 118)	-3223	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
114913	chr19	13950201	13950600	+	0	NA	intron (NM_001146254, intron 1 of 7)	AluJb|SINE|Alu	-2074	NM_138353	90379		NM_138353	ENSG00000132017	DCAF15	C19orf72	DDB1 and CUL4 associated factor 15	protein-coding
154993	chr22	37309351	37310650	+	0	NA	intron (NM_001318024, intron 9 of 12)	intron (NM_001318024, intron 9 of 12)	27492	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
118053	chr19	34265251	34265730	+	0	NA	intron (NM_014686, intron 1 of 13)	intron (NM_014686, intron 1 of 13)	10936	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
30359	chr10	77865671	77865830	+	0	NA	intron (NM_004747, intron 2 of 31).2	intron (NM_004747, intron 2 of 31).2	61005	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
39931	chr11	62534621	62535100	+	0	NA	intron (NM_001620, intron 4 of 4)	intron (NM_001620, intron 4 of 4)	10804	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
129947	chr2	73907921	73908270	+	0	NA	intron (NM_001615, intron 3 of 8)	LTR33|LTR|ERVL	15087	NM_001615	72		NM_001615	ENSG00000163017	ACTG2	ACT|ACTA3|ACTE|ACTL3|ACTSG|MMIHS5|VSCM|VSCM1	actin gamma 2, smooth muscle	protein-coding
55855	chr12	109156071	109156230	+	0	NA	intron (NM_001093, intron 2 of 52)	FAM|SINE|Alu	39563	NM_001093	32		NM_001093	ENSG00000076555	ACACB	ACACbeta|ACC-beta|ACC2|ACCB|ACCbeta|HACC275	acetyl-CoA carboxylase beta	protein-coding
59966	chr13	31927921	31928500	+	0	NA	intron (NR_027062, intron 1 of 3)	MIRb|SINE|MIR	81427	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
16082	chr1	153532901	153534140	+	0	NA	Intergenic	Intergenic	2471	NM_014624	6277		NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA|S10A6	S100 calcium binding protein A6	protein-coding
99519	chr17	50292351	50292910	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-4775	NR_125805	103752589		NR_125805	ENSG00000251179	TMEM92-AS1	TCONS_00025237|lncRNA-508851	TMEM92 antisense RNA 1	ncRNA
62285	chr13	98910501	98911000	+	0	NA	intron (NM_001318849, intron 9 of 54)	intron (NM_001318849, intron 9 of 54)	67314	NM_001366683	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
156440	chr22	41239071	41239230	+	0	NA	intron (NM_138481, intron 2 of 5)	L2b|LINE|L2	1781	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
174615	chr4	40294471	40294850	+	0	NA	Intergenic	Intergenic	-12525	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
114282	chr19	11595751	11595850	+	0	NA	Intergenic	AluY|SINE|Alu	-1683	NM_001290084	199692		NM_145295	ENSG00000198551	ZNF627	-	zinc finger protein 627	protein-coding
9834	chr1	54121521	54122150	+	0	NA	Intergenic	CpG	31346	NM_201546	200008		NM_201546	ENSG00000157211	CDCP2	-	CUB domain containing protein 2	protein-coding
160928	chr3	36877971	36878650	+	0	NA	intron (NM_014831, intron 7 of 22)	MER1B|DNA|hAT-Charlie	-55810	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
106244	chr18	11983701	11984180	+	0	NA	intron (NM_014214, intron 1 of 7)	intron (NM_014214, intron 1 of 7)	2433	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
66320	chr14	61418071	61418300	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	96742	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
128333	chr2	54704521	54705500	+	0	NA	Intergenic	Intergenic	-20002	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133533	chr2	120231771	120233650	+	0	NA	Intergenic	Intergenic	-9310	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
45813	chr11	119350001	119350980	+	0	NA	Intergenic	Intergenic	-3785	NM_015645	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
119125	chr19	39362901	39363100	+	0	NA	intron (NM_001384588, intron 4 of 13)	intron (NM_001384588, intron 4 of 13)	20579	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
236942	chrX	100685771	100685930	+	0	NA	intron (NM_001370167, intron 16 of 19)	intron (NM_001370167, intron 16 of 19)	41651	NM_014467	27286		NM_014467	ENSG00000102359	SRPX2	BPP|CBPS|PMGX|RESDX|SRPUL	sushi repeat containing protein X-linked 2	protein-coding
6316	chr1	27639001	27639200	+	0	NA	Intergenic	Intergenic	-3915	NM_005248	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
202759	chr6	159043401	159043850	+	0	NA	exon (NM_138810, exon 4 of 8)	exon (NM_138810, exon 4 of 8)	-1272	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
146441	chr20	49671251	49671350	+	0	NA	intron (NM_004776, intron 1 of 8)	AluSx|SINE|Alu	42578	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
132757	chr2	109792521	109793180	+	0	NA	promoter-TSS (NM_001123363)	promoter-TSS (NM_001123363)	92	NM_001037866	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
101960	chr17	74657401	74657950	+	0	NA	Intergenic	Intergenic	-13456	NM_175738	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
178005	chr4	139304401	139304600	+	0	NA	intron (NM_057175, intron 1 of 19)	MER2|DNA|TcMar-Tigger	-1949	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
17472	chr1	156713901	156714580	+	0	NA	Intergenic	AluSx|SINE|Alu	-8424	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
49642	chr12	28250651	28251500	+	0	NA	intron (NM_001352086, intron 3 of 15)	intron (NM_001352086, intron 3 of 15)	-60337	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
174488	chr4	39943951	39944250	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluY|SINE|Alu	33811	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
103669	chr17	78788501	78788700	+	0	NA	intron (NM_001385179, intron 20 of 20)	intron (NM_001385179, intron 20 of 20)	-6258	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
128039	chr2	47401421	47401880	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1417	NM_001258281	4436		NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2|LYNCH1|MMRCS2|MSH-2|hMSH2	mutS homolog 2	protein-coding
233667	chrX	1072751	1073050	+	0	NA	Intergenic	AluSg7|SINE|Alu	139749	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
231856	chr9	132873421	132873800	+	0	NA	intron (NM_001317958, intron 1 of 12)	intron (NM_001317958, intron 1 of 12)	4674	NM_001317958	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
227883	chr9	93947821	93948080	+	0	NA	Intergenic	Intergenic	7405	NM_021570	56033		NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
29207	chr10	68986951	68987350	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1653	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
192810	chr6	26658051	26658150	+	0	NA	intron (NM_001242799, intron 1 of 2)	MIRb|SINE|MIR	1646	NM_024639	79692		NM_024639	ENSG00000181315	ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
35330	chr11	1050851	1051750	+	0	NA	intron (NR_160890, intron 1 of 3)	intron (NR_160890, intron 1 of 3)	1420	NR_160890	101927503		NM_001323425	ENSG00000254872	LINC02688	-	long intergenic non-protein coding RNA 2688	ncRNA
141576	chr2	241573901	241574100	+	0	NA	3' UTR (NM_032515, exon 5 of 5)	3' UTR (NM_032515, exon 5 of 5)	-14857	NR_033346	100379249		NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	ncRNA
109774	chr19	1133221	1134830	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	-1804	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
236024	chrX	55118651	55119030	+	0	NA	Intergenic	Intergenic	29822	NM_207339	203569		NM_207339	ENSG00000234068	PAGE2	CT16.4|GAGEC2|GAGEE2|PAGE-2	PAGE family member 2	protein-coding
72530	chr15	34315251	34315350	+	0	NA	intron (NM_133647, intron 1 of 24)	Tigger1|DNA|TcMar-Tigger	3520	NM_005135	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
140673	chr2	234032171	234033000	+	0	NA	Intergenic	HAL1|LINE|L1	-18117	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
238748	chrX	154335201	154335400	+	0	NA	Intergenic	Intergenic	30130	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
118359	chr19	35658071	35658230	+	0	NA	intron (NM_001863, intron 3 of 3)	L1MC4a|LINE|L1	-8366	NM_001281443	11045		NM_007000	ENSG00000105668	UPK1A	TSPAN21|UP1A|UPIA|UPKA	uroplakin 1A	protein-coding
1407	chr1	2558271	2558630	+	0	NA	exon (NM_003820, exon 3 of 8).2	exon (NM_003820, exon 3 of 8).2	-1439	NR_037844	115110		NR_026927		TNFRSF14-AS1	-	TNFRSF14 antisense RNA 1	ncRNA
24780	chr1	248871301	248871500	+	0	NA	Intergenic	AluY|SINE|Alu	-12315	NM_001350072	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
58875	chr13	18214901	18215180	+	0	NA	intron (NR_027278, intron 1 of 7)	HSATI|Satellite|Satellite	19743	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
103580	chr17	78699021	78699480	+	0	NA	intron (NM_017456, intron 7 of 12)	AluSg|SINE|Alu	17782	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
213081	chr7	131093451	131093990	+	0	NA	intron (NR_109852, intron 2 of 5)	AluSq|SINE|Alu	13310	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
67537	chr14	71078651	71078950	+	0	NA	intron (NM_014982, intron 28 of 35)	L1MEc|LINE|L1	171341	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
28126	chr10	43417601	43418930	+	0	NA	promoter-TSS (NR_145740)	promoter-TSS (NR_145740)	-825	NR_145740	109616985		NR_145740	ENSG00000221400	SNORD3J	-	small nucleolar RNA, C/D box 3J	snoRNA
25103	chr10	3936401	3936800	+	0	NA	Intergenic	Intergenic	-54560	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
200755	chr6	137815721	137816550	+	0	NA	Intergenic	Intergenic	-51124	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
181478	chr5	42889201	42889730	+	0	NA	Intergenic	Intergenic	-77389	NM_001085486	6414		NM_005410	ENSG00000250722	SELENOP	SELP|SEPP|SEPP1|SeP	selenoprotein P	protein-coding
188675	chr5	157268021	157268480	+	0	NA	intron (NM_001291722, intron 1 of 31)	intron (NM_001291722, intron 1 of 31)	-1074	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
96149	chr17	39675801	39676900	+	0	NA	intron (NM_001291726, intron 2 of 6)	intron (NM_001291726, intron 2 of 6)	7897	NM_002686	5409		NM_002686	ENSG00000141744	PNMT	PENT|PNMTase	phenylethanolamine N-methyltransferase	protein-coding
76246	chr15	73991421	73992880	+	0	NA	exon (NM_001256675, exon 1 of 6)	exon (NM_001256675, exon 1 of 6)	145	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
189443	chr5	172982221	172982550	+	0	NA	Intergenic	AluJr|SINE|Alu	-1386	NM_003945	8992		NM_003945	ENSG00000113732	ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase H+ transporting V0 subunit e1	protein-coding
77443	chr15	84231401	84232100	+	0	NA	Intergenic	Intergenic	-1582	NR_027001	388152		NM_203426	ENSG00000290689	GOLGA2P7	-	GOLGA2 pseudogene 7	pseudo
108445	chr18	70167721	70167980	+	0	NA	intron (NM_173630, intron 12 of 48)	intron (NM_173630, intron 12 of 48)	37837	NM_001318520	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
101648	chr17	68257201	68257400	+	0	NA	TTS (NM_001033572)	TTS (NM_001033572)	-1870	NM_001352903	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
162887	chr3	49384401	49385600	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluSx1|SINE|Alu	-26400	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
140774	chr2	235492871	235493030	+	0	NA	Intergenic	Intergenic	-1093	NM_001037131	116987		NM_014914	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
6123	chr1	27350721	27350980	+	0	NA	exon (NM_001193308, exon 11 of 15)	exon (NM_001193308, exon 11 of 15)	8828	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
214312	chr7	149238371	149238750	+	0	NA	Intergenic	L2a|LINE|L2	-1091	NM_012256	7988		NM_012256	ENSG00000170260	ZNF212	C2H2-150|ZNF182|ZNFC150	zinc finger protein 212	protein-coding
127515	chr2	42299121	42299930	+	0	NA	intron (NM_019063, intron 13 of 22)	L1MB7|LINE|L1	60513	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
109673	chr19	1025071	1025600	+	0	NA	Intergenic	Intergenic	-1273	NM_201277	1265		NM_004368	ENSG00000064666	CNN2	-	calponin 2	protein-coding
46414	chr11	126358621	126359080	+	0	NA	intron (NM_001348397, intron 2 of 11)	intron (NM_001348397, intron 2 of 11)	2838	NM_001348397	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
202931	chr6	160461751	160461930	+	0	NA	Intergenic	(TGTG)n|Simple_repeat|Simple_repeat	49284	NR_028092	80350		NM_024492	ENSG00000290613	LPAL2	APOA2|APOAL|APOARGC|apo(a)rg-C	lipoprotein(a) like 2 (pseudogene)	pseudo
85582	chr16	53493071	53493230	+	0	NA	intron (NM_001012398, intron 8 of 9)	AluSg4|SINE|Alu	10059	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
228932	chr9	113273751	113273850	+	0	NA	intron (NM_139286, intron 1 of 3)	AluJr|SINE|Alu	1772	NM_139286	246184		NM_139286	ENSG00000176386	CDC26	ANAPC12|APC12|C9orf17	cell division cycle 26	protein-coding
229222	chr9	114907051	114907580	+	0	NA	intron (NM_001244, intron 2 of 3)	intron (NM_001244, intron 2 of 3)	23276	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
1097	chr1	2027701	2027900	+	0	NA	intron (NM_000815, intron 5 of 8)	intron (NM_000815, intron 5 of 8)	8455	NM_000815	2563		NM_000815	ENSG00000187730	GABRD	EIG10|EJM7|GABAARdelta|GEFSP5	gamma-aminobutyric acid type A receptor subunit delta	protein-coding
197361	chr6	73462941	73464180	+	0	NA	intron (NM_133645, intron 1 of 12)	intron (NM_133645, intron 1 of 12)	1823	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
169397	chr3	160564021	160564280	+	0	NA	intron (NM_002268, intron 1 of 16)	intron (NM_002268, intron 1 of 16)	1421	NM_002268	3840		NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
85318	chr16	49856651	49857200	+	0	NA	promoter-TSS (NM_001379286)	promoter-TSS (NM_001379286)	-813	NM_001379286	23090		NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
136343	chr2	175567701	175567900	+	0	NA	Intergenic	Intergenic	-386090	NM_001002258	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
237473	chrX	119783571	119783980	+	0	NA	Intergenic	Intergenic	3709	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
224185	chr9	5389171	5389680	+	0	NA	intron (NM_018465, intron 3 of 5)	MER90|LTR|ERV1	48500	NM_018465	55848		NM_018465	ENSG00000107020	PLGRKT	AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT)	plasminogen receptor with a C-terminal lysine	protein-coding
165489	chr3	99867951	99868450	+	0	NA	intron (NM_182909, intron 4 of 5)	intron (NM_182909, intron 4 of 5)	7973	NM_001370247	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
98122	chr17	45834001	45834200	+	0	NA	intron (NM_001303018, intron 10 of 10).3	intron (NM_001303018, intron 10 of 10).3	-10781	NM_175882	162540		NM_175882	ENSG00000185294	SPPL2C	IMP5	signal peptide peptidase like 2C	protein-coding
221233	chr8	121725921	121726380	+	0	NA	Intergenic	MIR|SINE|MIR	-84710	NM_005328	3037		NM_005328	ENSG00000170961	HAS2	-	hyaluronan synthase 2	protein-coding
31915	chr10	100484051	100484350	+	0	NA	TTS (NM_003393)	TTS (NM_003393)	21191	NM_003393	7479		NM_003393	ENSG00000075290	WNT8B	-	Wnt family member 8B	protein-coding
217421	chr8	28398621	28398880	+	0	NA	Intergenic	Intergenic	-12290	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
136227	chr2	174592671	174592840	+	0	NA	intron (NM_001077269, intron 1 of 7)	AluSx|SINE|Alu	5049	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
206229	chr7	28956571	28957000	+	0	NA	exon (NM_014817, exon 1 of 1)	exon (NM_014817, exon 1 of 1)	1545	NM_014817	9865		NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
95535	chr17	36598801	36599400	+	0	NA	intron (NM_024308, intron 4 of 6)	intron (NM_024308, intron 4 of 6)	-2483	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
130458	chr2	85524471	85524630	+	0	NA	Intergenic	Intergenic	14336	NR_038942	100630918		NR_038942	ENSG00000286532	PARTICL	PARTICLE	promoter of MAT2A antisense radiation-induced circulating long non-coding RNA	ncRNA
190537	chr5	180673651	180674350	+	0	NA	Intergenic	CpG	-10096	NR_146728	105377765		NR_146728		LINC02222	-	long intergenic non-protein coding RNA 2222	ncRNA
179799	chr5	391751	393230	+	0	NA	intron (NR_165159, intron 6 of 13)	CpG	50670	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
213200	chr7	132577201	132577880	+	0	NA	promoter-TSS (NM_020911)	promoter-TSS (NM_020911)	-976	NM_020911	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
106658	chr18	23049521	23050230	+	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	-84689	NR_023359	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
88796	chr16	87380271	87381250	+	0	NA	intron (NM_001282683, intron 2 of 9)	intron (NM_001282683, intron 2 of 9)	3016	NM_024735	79791		NM_024735	ENSG00000103264	FBXO31	FBX14|FBXO14|Fbx31|MRT45|pp2386	F-box protein 31	protein-coding
188143	chr5	150404571	150404930	+	0	NA	exon (NM_004355, exon 6 of 8)	exon (NM_004355, exon 6 of 8)	8006	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
209995	chr7	92877401	92877600	+	0	NA	intron (NR_110087, intron 2 of 2)	L1M3b|LINE|L1	-40927	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
37292	chr11	14725671	14726030	+	0	NA	intron (NM_001363569, intron 1 of 15)	L2a|LINE|L2	82046	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
225190	chr9	34046151	34047130	+	0	NA	intron (NM_001370059, intron 1 of 28)	AluY|SINE|Alu	2247	NM_001370064	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
36769	chr11	9392871	9393800	+	0	NA	intron (NM_006391, intron 1 of 24)	intron (NM_006391, intron 1 of 24)	8683	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
97391	chr17	43363771	43364450	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	24788	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
223961	chr9	1869971	1870150	+	0	NA	Intergenic	Intergenic	-145287	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
125696	chr2	20346371	20347030	+	0	NA	intron (NM_001352925, intron 1 of 19)	intron (NM_001352925, intron 1 of 19)	4144	NM_001352927	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
212302	chr7	124929351	124930580	+	0	NA	promoter-TSS (NM_015450)	promoter-TSS (NM_015450)	18	NM_001042594	25913		NM_015450	ENSG00000128513	POT1	CMM10|CRMCC3|GLM9|HPOT1|PFBMFT8|TPDS3	protection of telomeres 1	protein-coding
106908	chr18	25953301	25954280	+	0	NA	Intergenic	AluJb|SINE|Alu	136823	NM_001007559	6760		NM_005637	ENSG00000141380	SS18	SMARCL1|SSXT|SYT	SS18 subunit of BAF chromatin remodeling complex	protein-coding
133000	chr2	111546671	111547130	+	0	NA	Intergenic	Intergenic	-51739	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
208354	chr7	66557221	66559000	+	0	NA	intron (NR_111979, intron 3 of 3)	intron (NR_111979, intron 3 of 3)	34297	NR_111978	493754		NR_002933	ENSG00000291136	RABGEF1P1	GS1-124K5.11	RABGEF1 pseudogene 1	pseudo
10680	chr1	71080421	71081880	+	0	NA	promoter-TSS (NR_046217)	promoter-TSS (NR_046217)	-115	NM_005455	9406		NM_005455	ENSG00000132485	ZRANB2	ZIS|ZIS1|ZIS2|ZNF265	zinc finger RANBP2-type containing 2	protein-coding
25436	chr10	6583251	6584330	+	0	NA	non-coding (NR_036502, exon 3 of 3)	non-coding (NR_036502, exon 3 of 3)	-3144	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
36538	chr11	6593651	6594350	+	0	NA	Intergenic	LTR78B|LTR|ERV1	9616	NM_015324	23378		NM_015324	ENSG00000132275	RRP8	KIAA0409|NML	ribosomal RNA processing 8	protein-coding
216027	chr8	9149621	9149930	+	0	NA	intron (NM_001201329, intron 1 of 1).2	intron (NM_001201329, intron 1 of 1).2	883	NM_024607	79660		NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
127386	chr2	41715401	41715980	+	0	NA	Intergenic	AluYa5|SINE|Alu	-161865	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
131353	chr2	96169271	96169580	+	0	NA	Intergenic	L1ME2|LINE|L1	-23985	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
219779	chr8	81132621	81133580	+	0	NA	Intergenic	Intergenic	-21032	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
213664	chr7	139870551	139870650	+	0	NA	intron (NM_030984, intron 1 of 11)	Tigger19b|DNA|TcMar-Tigger	41336	NM_001366538	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
140145	chr2	231597221	231598100	+	0	NA	Intergenic	MIR|SINE|MIR	4796	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
191265	chr6	6012051	6012600	+	0	NA	Intergenic	L1MC4|LINE|L1	-4720	NM_001278710	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
148375	chr20	63887671	63888030	+	0	NA	intron (NM_199360, intron 7 of 8)	intron (NM_199360, intron 7 of 8)	-7276	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
236846	chrX	79268121	79268530	+	0	NA	Intergenic	Intergenic	99009	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
86510	chr16	67100971	67101400	+	0	NA	TTS (NM_001368710)	TTS (NM_001368710)	-8756	NM_001320542	80262		NM_025187	ENSG00000125149	PHAF1	C16orf6|C16orf70|LIN10|MYTHO|lin-10	phagosome assembly factor 1	protein-coding
37561	chr11	18729251	18729550	+	0	NA	intron (NM_032781, intron 14 of 14)	intron (NM_032781, intron 14 of 14)	-3212	NR_160413	283284		NM_173588	ENSG00000179057	IGSF22	IGFN2	immunoglobulin superfamily member 22	protein-coding
153409	chr22	24843101	24843300	+	0	NA	intron (NM_133454, intron 2 of 24)	MIRb|SINE|MIR	36979	NM_133454	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
29867	chr10	72388251	72388350	+	0	NA	intron (NM_006077, intron 10 of 11)	intron (NM_006077, intron 10 of 11)	-33381	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
85485	chr16	50721001	50721200	+	0	NA	intron (NR_163434, intron 8 of 12)	AluSx1|SINE|Alu	-20986	NM_001378744	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
134548	chr2	143731101	143731400	+	0	NA	intron (NM_018460, intron 13 of 13)	intron (NM_018460, intron 13 of 13)	-205817	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
148840	chr21	8403801	8404350	+	0	NA	intron (NR_038958, intron 2 of 6).2	intron (NR_038958, intron 2 of 6).2	7149	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
223855	chr9	103701	103900	+	0	NA	Intergenic	AluSc8|SINE|Alu	14617	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
56043	chr12	110451701	110451900	+	0	NA	TTS (NM_001164373)	TTS (NM_001164373)	-1389	NM_001287222	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
122639	chr19	49834951	49835350	+	0	NA	exon (NM_001378355, exon 14 of 18)	exon (NM_001378355, exon 14 of 18)	3132	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
67952	chr14	74834671	74835030	+	0	NA	intron (NM_019589, intron 19 of 20)	intron (NM_019589, intron 19 of 20)	41295	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
116224	chr19	17520971	17521400	+	0	NA	3' UTR (NM_012088, exon 5 of 5)	3' UTR (NM_012088, exon 5 of 5)	-2116	NM_001098524	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
31845	chr10	99730221	99730480	+	0	NA	intron (NR_164009, intron 1 of 7)	AluSz|SINE|Alu	1777	NM_001320975	1355		NM_004376	ENSG00000014919	COX15	CEMCOX2|HAS|MC4DN6	cytochrome c oxidase assembly homolog COX15	protein-coding
50341	chr12	47088201	47088600	+	0	NA	intron (NM_138371, intron 1 of 3)	intron (NM_138371, intron 1 of 3)	-8441	NM_001370299	347902		NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
95254	chr17	35449601	35449830	+	0	NA	promoter-TSS (NM_144682)	promoter-TSS (NM_144682)	-949	NM_144682	146857		NM_144682	ENSG00000154760	SLFN13	SLFN10|hSLFN13	schlafen family member 13	protein-coding
229008	chr9	113657471	113658350	+	0	NA	Intergenic	(ATATAC)n|Simple_repeat|Simple_repeat	63781	NM_001276262	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
170959	chr3	194465201	194465400	+	0	NA	intron (NR_164666, intron 2 of 32)	L1MEc|LINE|L1	2939	NM_024524	79572		NM_024524	ENSG00000133657	ATP13A3	AFURS1|PPH5	ATPase 13A3	protein-coding
53734	chr12	68633651	68633750	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluSx4|SINE|Alu	-6325	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
57536	chr12	122148471	122148830	+	0	NA	Intergenic	Intergenic	-19069	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
213763	chr7	140640101	140641680	+	0	NA	promoter-TSS (NM_015689)	promoter-TSS (NM_015689)	-77	NM_015689	27147		NM_015689	ENSG00000146966	DENND2A	FAM31D|KIAA1277	DENN domain containing 2A	protein-coding
125940	chr2	25173101	25173300	+	0	NA	Intergenic	AluSq|SINE|Alu	-4349	NM_001035256	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
182075	chr5	55982901	55983600	+	0	NA	intron (NR_157112, intron 1 of 17)	AluJb|SINE|Alu	11713	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
194800	chr6	34234701	34236200	+	0	NA	Intergenic	CpG	-1423	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
72041	chr15	28712071	28712430	+	0	NA	intron (NM_001282468, intron 1 of 18).3	intron (NM_001282468, intron 1 of 18).3	171	NM_001282468	653720		NM_001282468	ENSG00000188626	GOLGA8M	-	golgin A8 family member M	protein-coding
95432	chr17	36120301	36120700	+	0	NA	Intergenic	Intergenic	16673	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
78885	chr15	100849171	100849930	+	0	NA	promoter-TSS (NR_160702)	promoter-TSS (NR_160702)	-202	NR_160702	105369201		NR_160702	ENSG00000272808	GCAWKR	-	gastric cancer associated WDR5 and KAT2A binding lncRNA	ncRNA
195094	chr6	35594621	35595680	+	0	NA	intron (NM_001145775, intron 7 of 11)	MIRb|SINE|MIR	69639	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
126095	chr2	25850221	25851150	+	0	NA	intron (NM_018263, intron 1 of 11)	L1MC5a|LINE|L1	-19784	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
147229	chr20	57404551	57405300	+	0	NA	intron (NM_001291780, intron 4 of 4)	intron (NM_001291780, intron 4 of 4)	-11869	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
158841	chr3	9805701	9806230	+	0	NA	intron (NM_005718, intron 5 of 5)	intron (NM_005718, intron 5 of 5)	-3950	NM_001025930	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
885	chr1	1649901	1650680	+	0	NA	intron (NM_001291345, intron 4 of 19)	A-rich|Low_complexity|Low_complexity	8714	NM_033487	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
109145	chr18	80246931	80247930	+	0	NA	promoter-TSS (NM_032510)	promoter-TSS (NM_032510)	84	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
92929	chr17	16689821	16690500	+	0	NA	promoter-TSS (NR_167766)	promoter-TSS (NR_167766)	-81	NM_001382000	9720		NM_014695	ENSG00000170160	CCDC144A	-	coiled-coil domain containing 144A	protein-coding
180373	chr5	7779251	7779550	+	0	NA	intron (NM_020546, intron 18 of 24)	MamGypsy2-I|LTR|Gypsy	71733	NM_001089584	134121		NM_001089584	ENSG00000215217	CFAP90	C5orf49	cilia and flagella associated protein 90	protein-coding
170609	chr3	186997671	186997830	+	0	NA	intron (NM_173216, intron 2 of 7)	AluJb|SINE|Alu	-24105	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
132328	chr2	105398321	105399600	+	0	NA	promoter-TSS (NM_001318896)	promoter-TSS (NM_001318896)	91	NM_001318895	2274		NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
133281	chr2	113517201	113517600	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	18316	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
231602	chr9	131557501	131557700	+	0	NA	intron (NM_001365666, intron 3 of 3)	intron (NM_001365666, intron 3 of 3)	12077	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
199419	chr6	116679771	116679930	+	0	NA	Intergenic	AluY|SINE|Alu	-1361	NM_001366309	3841		NM_002269	ENSG00000196911	KPNA5	IPOA6|SRP6	karyopherin subunit alpha 5	protein-coding
228497	chr9	100086301	100086650	+	0	NA	intron (NM_015051, intron 1 of 11)	intron (NM_015051, intron 1 of 11)	12525	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
120635	chr19	45066471	45067030	+	0	NA	intron (NM_001278439, intron 12 of 19)	intron (NM_001278439, intron 12 of 19)	-8877	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
112653	chr19	6860321	6860580	+	0	NA	Intergenic	Intergenic	-27129	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
234082	chrX	9003121	9003380	+	0	NA	Intergenic	Intergenic	30877	NM_205849	171483		NM_173696	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9 member B	protein-coding
101254	chr17	66307821	66308180	+	0	NA	intron (NM_002737, intron 2 of 16)	L1ME3Cz|LINE|L1	5387	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
64500	chr14	24333581	24334090	+	0	NA	intron (NM_001198592, intron 2 of 25).2	CpG	1236	NM_139247	196883		NM_139247	ENSG00000129467	ADCY4	AC4	adenylate cyclase 4	protein-coding
151450	chr21	46160101	46162630	+	0	NA	3' UTR (NM_032261, exon 4 of 4)	3' UTR (NM_032261, exon 4 of 4)	-5786	NM_001320412	10841		NM_006657	ENSG00000160282	FTCD	LCHC1	formimidoyltransferase cyclodeaminase	protein-coding
178884	chr4	155759801	155760080	+	0	NA	intron (NM_000857, intron 2 of 13)	CpG-21594	919	NM_001291952	2983		NM_000857	ENSG00000061918	GUCY1B1	GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B3	guanylate cyclase 1 soluble subunit beta 1	protein-coding
40938	chr11	65309251	65309750	+	0	NA	Intergenic	AluY|SINE|Alu	-5366	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
82367	chr16	15993751	15994050	+	0	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	44284	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
172955	chr4	3534101	3534300	+	0	NA	Intergenic	Intergenic	-1778	NM_002337	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
177310	chr4	109655001	109655400	+	0	NA	intron (NM_017918, intron 1 of 7)	MER21C|LTR|ERVL	48245	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
238253	chrX	147915271	147915730	+	0	NA	intron (NR_033699, intron 1 of 15)	intron (NR_033699, intron 1 of 15)	3549	NM_001185075	2332		NM_002024	ENSG00000102081	FMR1	FMRP|FRAXA|POF|POF1	fragile X messenger ribonucleoprotein 1	protein-coding
231952	chr9	133139601	133140200	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	-8743	NM_001271774	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
180079	chr5	1106871	1107280	+	0	NA	intron (NM_006598, intron 1 of 23).2	MER4CL34|LTR|ERV1	4988	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
141451	chr2	241040271	241040580	+	0	NA	intron (NM_001080437, intron 8 of 31)	intron (NM_001080437, intron 8 of 31)	41807	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
38904	chr11	47416121	47416850	+	0	NA	TTS (NM_001128225)	TTS (NM_001128225)	7895	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
70427	chr14	102033401	102033800	+	0	NA	intron (NM_001376, intron 54 of 77)	intron (NM_001376, intron 54 of 77)	53444	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
69967	chr14	99790551	99791080	+	0	NA	intron (NM_001375411, intron 1 of 21)	intron (NM_001375411, intron 1 of 21)	-2598	NM_001008707	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
27852	chr10	40556671	40556830	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1811295	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
112903	chr19	7638821	7639080	+	0	NA	intron (NM_006949, intron 2 of 18)	intron (NM_006949, intron 2 of 18)	1840	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
147047	chr20	53657251	53658130	+	0	NA	Intergenic	Intergenic	49336	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
30217	chr10	74889471	74889780	+	0	NA	intron (NM_012330, intron 3 of 17).2	intron (NM_012330, intron 3 of 17).2	-23161	NR_134476								
40289	chr11	63854451	63854750	+	0	NA	intron (NM_004954, intron 1 of 16)	AluSq2|SINE|Alu	15490	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
227216	chr9	88537701	88538030	+	0	NA	intron (NM_145283, intron 1 of 2)	intron (NM_145283, intron 1 of 2)	2687	NM_145283	158046		NM_145283	ENSG00000130045	NXNL2	C9orf121|RDCVF2|RdCVF2L	nucleoredoxin like 2	protein-coding
43	chr1	196271	197630	+	0	NA	Intergenic	Intergenic	-8992	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
171814	chr4	663071	664880	+	0	NA	intron (NM_001350155, intron 12 of 17)	CpG-20737	10301	NM_007100	521		NM_007100	ENSG00000169020	ATP5ME	ATP5I|ATP5K	ATP synthase membrane subunit e	protein-coding
98274	chr17	46198301	46198700	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluSx|SINE|Alu	4927	NR_034172	644246		NR_034172	ENSG00000214401	KANSL1-AS1	-	KANSL1 antisense RNA 1	ncRNA
89140	chr16	88516301	88516930	+	0	NA	intron (NM_153813, intron 4 of 9)	intron (NM_153813, intron 4 of 9)	14438	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
197617	chr6	82364551	82365400	+	0	NA	exon (NM_006670, exon 3 of 3).2	exon (NM_006670, exon 3 of 3).2	731	NM_001166392	7162		NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
172605	chr4	2501351	2501650	+	0	NA	intron (NM_001185009, intron 5 of 8)	intron (NM_001185009, intron 5 of 8)	32047	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
224269	chr9	6068621	6069600	+	0	NA	Intergenic	Intergenic	-53486	NM_001243203	26953		NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
197789	chr6	87679601	87680500	+	0	NA	intron (NM_018064, intron 2 of 4)	intron (NM_018064, intron 2 of 4)	22183	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
164831	chr3	71010651	71011750	+	0	NA	intron (NM_001244810, intron 12 of 20)	MLT1K|LTR|ERVL-MaLR	53724	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
15010	chr1	148196901	148197430	+	0	NA	Intergenic	Intergenic	34455	NR_135559	100505824		NR_135559	ENSG00000232265	LINC02805	-	long intergenic non-protein coding RNA 2805	ncRNA
172861	chr4	3297671	3297830	+	0	NA	Intergenic	HAL1|LINE|L1	-16397	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
165390	chr3	94083201	94083400	+	0	NA	intron (NM_022072, intron 2 of 5)	MER51A|LTR|ERV1	20239	NM_022072	63899		NM_022072	ENSG00000178694	NSUN3	COXPD48|MST077|MSTP077	NOP2/Sun RNA methyltransferase 3	protein-coding
221581	chr8	125272621	125274130	+	0	NA	intron (NR_146191, intron 6 of 8)	intron (NR_146191, intron 6 of 8)	-156983	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
112754	chr19	7393451	7394030	+	0	NA	intron (NM_001367823, intron 10 of 28)	intron (NM_001367823, intron 10 of 28)	-1405	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
122701	chr19	49926221	49926680	+	0	NA	intron (NM_001193357, intron 1 of 1)	AluSx1|SINE|Alu	-2252	NM_012068	22809		NM_012068	ENSG00000169136	ATF5	ATFX|HMFN0395	activating transcription factor 5	protein-coding
139641	chr2	226652371	226652530	+	0	NA	Intergenic	Charlie13a|DNA|hAT-Charlie	6343	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
108702	chr18	77063251	77064100	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-46620	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
164516	chr3	63818521	63818850	+	0	NA	promoter-TSS (NM_001355236)	promoter-TSS (NM_001355236)	-614	NM_001355236	132200		NM_001355236	ENSG00000163632	C3orf49	-	chromosome 3 open reading frame 49	protein-coding
43374	chr11	77038221	77038480	+	0	NA	intron (NM_138706, intron 1 of 1)	AluJb|SINE|Alu	3952	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
125668	chr2	20135701	20135900	+	0	NA	Intergenic	Intergenic	-84172	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
134989	chr2	152695671	152695830	+	0	NA	intron (NM_001365600, intron 2 of 25)	intron (NM_001365600, intron 2 of 25)	21711	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
118425	chr19	35783871	35784230	+	0	NA	intron (NM_052948, intron 15 of 20)	L2a|LINE|L2	8486	NM_001366178	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
45943	chr11	121326401	121326800	+	0	NA	Intergenic	Intergenic	33732	NM_001024956	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
44038	chr11	95149671	95149830	+	0	NA	promoter-TSS (NR_110303)	promoter-TSS (NR_110303)	-789	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
26691	chr10	22635701	22636680	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	77918	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
142092	chr20	2524071	2525880	+	0	NA	promoter-TSS (NM_001282495)	promoter-TSS (NM_001282495)	-453	NM_001282495	79175		NM_024325	ENSG00000088876	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
111628	chr19	4126151	4126450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2178	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
204987	chr7	6421271	6421630	+	0	NA	intron (NM_139179, intron 9 of 14)	CpG	26504	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
167569	chr3	129427471	129427630	+	0	NA	intron (NM_207307, intron 1 of 8)	intron (NM_207307, intron 1 of 8)	1086	NM_207307	90288		NM_207307	ENSG00000172771	EFCAB12	C3orf25	EF-hand calcium binding domain 12	protein-coding
233311	chr9	137411151	137412200	+	0	NA	intron (NM_017820, intron 1 of 21)	intron (NM_017820, intron 1 of 21)	11487	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
228511	chr9	100351271	100351430	+	0	NA	intron (NM_017746, intron 1 of 14)	intron (NM_017746, intron 1 of 14)	1221	NM_001161584	54881		NM_017746	ENSG00000136891	TEX10	Ipi1|bA208F1.2	testis expressed 10	protein-coding
202512	chr6	158559751	158561250	+	0	NA	intron (NR_164859, intron 1 of 16)	CpG	409	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
170731	chr3	188165301	188165700	+	0	NA	intron (NM_001375462, intron 1 of 11)	intron (NM_001375462, intron 1 of 11)	11343	NM_001375463	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
97856	chr17	44984801	44985000	+	0	NA	Intergenic	CpG	-16597	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
6045	chr1	27123801	27124000	+	0	NA	intron (NM_003047, intron 1 of 11)	AluSx|SINE|Alu	31225	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
207441	chr7	44565321	44566380	+	0	NA	3' UTR (NM_001257189, exon 13 of 13)	3' UTR (NM_001257189, exon 13 of 13)	8688	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
106371	chr18	13279121	13280030	+	0	NA	intron (NM_001378099, intron 2 of 6)	intron (NM_001378099, intron 2 of 6)	2213	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
17575	chr1	156840301	156841830	+	0	NA	exon (NM_014215, exon 22 of 22)	exon (NM_014215, exon 22 of 22)	18052	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
216249	chr8	12375401	12375800	+	0	NA	intron (NR_026789, intron 2 of 4)	intron (NR_026789, intron 2 of 4)	4189	NR_046415	649352		NR_046415		LOC649352	-	ubiquitin carboxyl-terminal hydrolase 17-like protein 2-like	pseudo
82678	chr16	19804851	19805150	+	0	NA	intron (NM_001305121, intron 7 of 8)	intron (NM_001305121, intron 7 of 8)	79848	NM_016235	51704		NM_016235	ENSG00000167191	GPRC5B	MLC3|RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding
201057	chr6	142391371	142391530	+	0	NA	intron (NM_001032394, intron 6 of 24)	(AC)n|Simple_repeat|Simple_repeat	89443	NM_198569	57211		NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
131059	chr2	88624071	88624430	+	0	NA	intron (NM_004836, intron 1 of 16)	AluSq|SINE|Alu	679	NM_001313915	9451		NM_004836	ENSG00000172071	EIF2AK3	PEK|PERK|WRS	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding
65528	chr14	51913451	51913780	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	4956	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
228836	chr9	112170321	112170580	+	0	NA	intron (NM_022486, intron 1 of 16)	intron (NM_022486, intron 1 of 16)	4847	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
14866	chr1	146411101	146411300	+	0	NA	Intergenic	Intergenic	34393	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
142149	chr20	2771621	2771980	+	0	NA	Intergenic	L1MD2|LINE|L1	28827	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
13616	chr1	116403721	116403980	+	0	NA	TTS (NR_024124)	TTS (NR_024124)	14709	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
167680	chr3	130097171	130097530	+	0	NA	TTS (NR_024252)	TTS (NR_024252)	-3046	NR_146710	105374105		NR_146710		LINC02014	-	long intergenic non-protein coding RNA 2014	ncRNA
188392	chr5	152532671	152532900	+	0	NA	Intergenic	Intergenic	-127506	NM_020167	56923		NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
162769	chr3	49079851	49080150	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluSx1|SINE|Alu	13632	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
117554	chr19	21036821	21037080	+	0	NA	intron (NM_025189, intron 4 of 4)	L1MB2|LINE|L1	16293	NM_025189	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
127501	chr2	42279321	42279600	+	0	NA	intron (NM_019063, intron 6 of 22)	L1M3|LINE|L1	80578	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
174739	chr4	44447501	44448030	+	0	NA	exon (NM_198353, exon 1 of 2)	exon (NM_198353, exon 1 of 2)	1044	NM_198353	386617		NM_198353	ENSG00000183783	KCTD8	-	potassium channel tetramerization domain containing 8	protein-coding
179508	chr4	184732221	184732480	+	0	NA	intron (NM_024629, intron 1 of 12)	MER5A|DNA|hAT-Charlie	1746	NM_024629	79682		NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
84932	chr16	31265171	31266280	+	0	NA	intron (NM_000632, intron 3 of 29)	intron (NM_000632, intron 3 of 29)	5750	NM_000632	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
164337	chr3	57998851	57999430	+	0	NA	Intergenic	Intergenic	-9282	NM_001164317	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
173259	chr4	7039001	7040000	+	0	NA	intron (NR_033828, intron 2 of 3)	intron (NR_033828, intron 2 of 3)	3501	NM_153376	257236		NM_153376	ENSG00000173013	CFAP184	CCDC96	cilia and flagella associated protein 184	protein-coding
194214	chr6	32188971	32189480	+	0	NA	intron (NM_002586, intron 1 of 8).6	intron (NM_002586, intron 1 of 8).6	977	NM_002586	5089		NM_002586	ENSG00000204304	PBX2	G17|HOX12|PBX2MHC	PBX homeobox 2	protein-coding
172367	chr4	1747301	1747800	+	0	NA	Intergenic	Intergenic	26029	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
192589	chr6	25966551	25967150	+	0	NA	exon (NM_006355, exon 3 of 8)	exon (NM_006355, exon 3 of 8)	4048	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
55380	chr12	104305571	104305930	+	0	NA	TTS (NM_001008394)	TTS (NM_001008394)	2011	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
160839	chr3	33068751	33069050	+	0	NA	exon (NM_001079811, exon 3 of 16)	exon (NM_001079811, exon 3 of 16)	27932	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
229464	chr9	121744401	121744800	+	0	NA	intron (NM_138709, intron 1 of 13)	intron (NM_138709, intron 1 of 13)	1815	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
146559	chr20	49995621	49996080	+	0	NA	Intergenic	L2a|LINE|L2	12870	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
103819	chr17	79100121	79100380	+	0	NA	intron (NM_001082575, intron 9 of 14)	intron (NM_001082575, intron 9 of 14)	25426	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
130981	chr2	87634221	87634480	+	0	NA	Intergenic	Intergenic	4590	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
33467	chr10	119064151	119064800	+	0	NA	intron (NM_003750, intron 7 of 21)	MSTA|LTR|ERVL-MaLR	-4337	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
233817	chrX	1474571	1475530	+	0	NA	intron (NM_178129, intron 1 of 1)	(GATG)n|Simple_repeat|Simple_repeat	-21288	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
161106	chr3	38175451	38175550	+	0	NA	intron (NM_005109, intron 1 of 17)	AluJb|SINE|Alu	9963	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
85296	chr16	48687551	48687650	+	0	NA	Intergenic	Intergenic	-77420	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
99639	chr17	50621551	50622130	+	0	NA	intron (NM_198377, intron 34 of 36)	intron (NM_198377, intron 34 of 36)	-13041	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
94985	chr17	32340501	32341400	+	0	NA	intron (NM_022344, intron 2 of 9)	AluJb|SINE|Alu	1223	NM_022344	64149		NM_022344	ENSG00000108666	C17orf75	NJMU-R1|SRI2	chromosome 17 open reading frame 75	protein-coding
106877	chr18	24368771	24368930	+	0	NA	intron (NM_080597, intron 2 of 27)	intron (NM_080597, intron 2 of 27)	28974	NM_080597	114876		NM_018030	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein like 1A	protein-coding
207712	chr7	47254151	47254650	+	0	NA	Intergenic	CpG	210403	NR_145813	109623468		NR_145813		SNORD151	-	small nucleolar RNA, C/D box 151	snoRNA
236879	chrX	82087521	82087780	+	0	NA	Intergenic	MER57-int|LTR|ERV1	885548	NM_003022	6451		NM_003022	ENSG00000131171	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate rich protein like	protein-coding
192660	chr6	26196501	26198300	+	0	NA	promoter-TSS (NM_001376937)	promoter-TSS (NM_001376937)	-114	NM_001376937	8351		NM_003530	ENSG00000197409	H3C4	H3/b|H3C1|H3C10|H3C11|H3C12|H3C2|H3C3|H3C6|H3C7|H3C8|H3FB|HIST1H3D	H3 clustered histone 4	protein-coding
63230	chr13	113916651	113917150	+	0	NA	non-coding (NR_164112, exon 5 of 8)	non-coding (NR_164112, exon 5 of 8)	12091	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
49857	chr12	34218621	34219350	+	0	NA	Intergenic	CpG	196489	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
79556	chr16	972371	973050	+	0	NA	intron (NM_001352017, intron 1 of 11)	intron (NM_001352017, intron 1 of 11)	-1711	NM_001352020	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
137682	chr2	197477971	197478130	+	0	NA	Intergenic	LTR47A|LTR|ERVL	8853	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
77949	chr15	89356821	89357430	+	0	NA	Intergenic	Intergenic	-4454	NR_133001	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
219746	chr8	81075801	81076300	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	36018	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
184071	chr5	93573771	93573930	+	0	NA	intron (NR_109818, intron 1 of 6)	intron (NR_109818, intron 1 of 6)	-2507	NR_109825	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
220261	chr8	97681371	97681530	+	0	NA	intron (NM_178812, intron 2 of 11)	intron (NM_178812, intron 2 of 11)	37266	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
11649	chr1	91798751	91799250	+	0	NA	intron (NM_003243, intron 2 of 16)	MIRb|SINE|MIR	87151	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
15641	chr1	150709951	150710050	+	0	NA	intron (NM_001199829, intron 6 of 13)	LTR5A|LTR|ERVK	10895	NM_001199829	84072		NM_032132	ENSG00000143452	HORMAD1	CT46|NOHMA	HORMA domain containing 1	protein-coding
80032	chr16	1947721	1948330	+	0	NA	intron (NM_005061, intron 4 of 9)	AluYf1|SINE|Alu	-4826	NM_001382264	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
157075	chr22	42606471	42606830	+	0	NA	intron (NM_001278657, intron 1 of 8)	AluJo|SINE|Alu	8233	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
226489	chr9	71761301	71761500	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	7113	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
97021	chr17	42304151	42304600	+	0	NA	exon (NM_001288720, exon 10 of 18)	exon (NM_001288720, exon 10 of 18)	16319	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
128206	chr2	53970021	53971880	+	0	NA	promoter-TSS (NM_001320587)	promoter-TSS (NM_001320587)	43	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
76578	chr15	75333401	75334000	+	0	NA	Intergenic	Intergenic	-2363	NM_017828	54939		NM_017828	ENSG00000140365	COMMD4	-	COMM domain containing 4	protein-coding
186930	chr5	139634751	139634930	+	0	NA	Intergenic	Intergenic	-12459	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
120552	chr19	44957251	44957950	+	0	NA	intron (NM_001294, intron 1 of 13)	intron (NM_001294, intron 1 of 13)	2220	NM_001294	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
60692	chr13	43875621	43875880	+	0	NA	intron (NM_144974, intron 1 of 6)	MER89|LTR|ERV1	-3428	NM_001128303	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
82169	chr16	14919821	14920300	+	0	NA	non-coding (NR_146231, exon 7 of 39)	non-coding (NR_146231, exon 7 of 39)	-5877	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
98754	chr17	48097371	48097830	+	0	NA	intron (NM_001127228, intron 1 of 4)	AluSx1|SINE|Alu	3586	NM_006807	10951		NM_006807	ENSG00000108468	CBX1	CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|Hp1beta|M31|MOD1|p25beta	chromobox 1	protein-coding
90085	chr16	90022271	90023750	+	0	NA	intron (NM_001286208, intron 1 of 9)	intron (NM_001286208, intron 1 of 9)	330	NM_001481	2622		NM_001481	ENSG00000141013	GAS8	CILD33|DRC4|GAS11	growth arrest specific 8	protein-coding
151044	chr21	44652301	44652600	+	0	NA	intron (NM_144991, intron 1 of 11)	MER65-int|LTR|ERV1	2209	NM_198698	386684		NM_198698	ENSG00000212933	KRTAP12-4	KRTAP12.4	keratin associated protein 12-4	protein-coding
68384	chr14	79613821	79614080	+	0	NA	intron (NR_158975, intron 17 of 21)	intron (NR_158975, intron 17 of 21)	334570	NM_138970	9369		NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
135392	chr2	160493501	160494580	+	0	NA	promoter-TSS (NM_002897)	promoter-TSS (NM_002897)	-233	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
209482	chr7	76607051	76607150	+	0	NA	intron (NR_029411, intron 2 of 2)	intron (NR_029411, intron 2 of 2)	20203	NM_012230	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
95774	chr17	38676201	38676400	+	0	NA	Intergenic	Intergenic	-1343	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
151922	chr22	19030151	19030880	+	0	NA	intron (NR_110533, intron 5 of 5)	intron (NR_110533, intron 5 of 5)	7891	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
142176	chr20	2867521	2868250	+	0	NA	intron (NM_002836, intron 5 of 27)	intron (NM_002836, intron 5 of 27)	3690	NM_002836	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
20623	chr1	199056551	199056650	+	0	NA	intron (NR_126351, intron 2 of 2)	AluY|SINE|Alu	-37636	NR_110525	102800316		NR_110525		LINC01222	TCONS_00000112	long intergenic non-protein coding RNA 1222	ncRNA
19284	chr1	172764151	172764740	+	0	NA	Intergenic	Intergenic	105342	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
87894	chr16	78770101	78770900	+	0	NA	intron (NM_016373, intron 8 of 8)	LTR41|LTR|ERVL	670846	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
81947	chr16	11814571	11814730	+	0	NA	Intergenic	AluSx|SINE|Alu	14182	NR_131217	400500		NR_024049	ENSG00000262117	BCAR4	-	breast cancer anti-estrogen resistance 4	ncRNA
135143	chr2	157445501	157445730	+	0	NA	Intergenic	Charlie19a|DNA|hAT-Charlie	-1526	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
192948	chr6	27811871	27812300	+	0	NA	Intergenic	Intergenic	2034	NM_003536	8357		NM_003536	ENSG00000278828	H3C10	H3/k|H3C1|H3C11|H3C12|H3C2|H3C3|H3C4|H3C6|H3C7|H3C8|H3F1K|H3FK|HIST1H3H	H3 clustered histone 10	protein-coding
177163	chr4	108144451	108144980	+	0	NA	intron (NM_016269, intron 3 of 11)	MamRTE1|LINE|RTE-BovB	22082	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
61408	chr13	51737671	51737850	+	0	NA	intron (NM_052950, intron 6 of 11)	intron (NM_052950, intron 6 of 11)	65975	NM_001377932	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
95615	chr17	37603821	37604280	+	0	NA	intron (NM_001163544, intron 1 of 20).2	AluSx|SINE|Alu	5368	NM_001163546	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
216276	chr8	12507901	12508100	+	0	NA	intron (NR_040091, intron 5 of 6)	L1PA4|LINE|L1	70987	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
174601	chr4	40262751	40262850	+	0	NA	Intergenic	Intergenic	-44385	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
163002	chr3	49773601	49773800	+	0	NA	intron (NM_153273, intron 1 of 5)	intron (NM_153273, intron 1 of 5)	12494	NM_001242829	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
171081	chr3	195481571	195482500	+	0	NA	Intergenic	Intergenic	-39015	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
61160	chr13	48978871	48979500	+	0	NA	intron (NM_001278438, intron 1 of 25)	intron (NM_001278438, intron 1 of 25)	2523	NR_103528	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
165738	chr3	105686371	105687180	+	0	NA	intron (NM_001321806, intron 12 of 17)	intron (NM_001321806, intron 12 of 17)	180816	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
47862	chr12	6633571	6634130	+	0	NA	intron (NM_020400, intron 1 of 1)	intron (NM_020400, intron 1 of 1)	2109	NM_020400	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
158347	chr22	50458051	50458150	+	0	NA	intron (NM_002972, intron 28 of 40)	AluY|SINE|Alu	16935	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
7431	chr1	32969221	32969480	+	0	NA	Intergenic	L1MB3|LINE|L1	-4541	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
59792	chr13	30313351	30313450	+	0	NA	Intergenic	UCON28a|Unknown|Unknown	-5849	NM_032116	84056		NM_032116	ENSG00000102781	KATNAL1	-	katanin catalytic subunit A1 like 1	protein-coding
53472	chr12	66107421	66107750	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	23165	NM_032338	84298		NM_032338	ENSG00000139233	LLPH	C12orf31|hLLP	LLP homolog, long-term synaptic facilitation factor	protein-coding
174951	chr4	49147221	49148130	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	161033	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
231420	chr9	131178201	131178830	+	0	NA	intron (NM_001318324, intron 24 of 35)	intron (NM_001318324, intron 24 of 35)	-11624	NM_001318325	8021		NM_005085	ENSG00000126883	NUP214	CAIN|CAN|IIAE9	nucleoporin 214	protein-coding
159933	chr3	17033321	17033850	+	0	NA	intron (NM_015184, intron 3 of 5)	intron (NM_015184, intron 3 of 5)	100389	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
178011	chr4	139312771	139313130	+	0	NA	intron (NM_057175, intron 1 of 19)	intron (NM_057175, intron 1 of 19)	-10399	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
158223	chr22	50273271	50273730	+	0	NA	Intergenic	LTR13|LTR|ERVK	-3120	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
61195	chr13	49300921	49301950	+	0	NA	Intergenic	Intergenic	53510	NR_036439	81602		NM_030911	ENSG00000102543	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
67617	chr14	72896951	72897250	+	0	NA	Intergenic	AluJr|SINE|Alu	-2984	NM_001280543	8110		NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4|SMARCG3	double PHD fingers 3	protein-coding
160765	chr3	32686551	32686650	+	0	NA	intron (NR_046352, intron 1 of 16)	L2a|LINE|L2	1412	NM_015442	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
41240	chr11	65782301	65783450	+	0	NA	Intergenic	Intergenic	-1899	NM_138368	91056		NM_138368	ENSG00000254470	AP5B1	AP-5|PP1030	adaptor related protein complex 5 subunit beta 1	protein-coding
171200	chr3	195704771	195704930	+	0	NA	intron (NR_122105, intron 2 of 4)	intron (NR_122105, intron 2 of 4)	5449	NR_030296	693155		NR_030296	ENSG00000207650	MIR570	MIRN570|hsa-mir-570	microRNA 570	ncRNA
195406	chr6	36788821	36789230	+	0	NA	intron (NM_001376889, intron 9 of 21)	intron (NM_001376889, intron 9 of 21)	-23230	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
224137	chr9	4743571	4744130	+	0	NA	Intergenic	Intergenic	-1807	NM_001199853	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
145028	chr20	38057371	38057880	+	0	NA	exon (NM_021215, exon 4 of 7)	exon (NM_021215, exon 4 of 7)	23879	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
52497	chr12	56028821	56029080	+	0	NA	intron (NM_001351091, intron 6 of 8)	intron (NM_001351091, intron 6 of 8)	-3859	NR_135023	105369781		NR_135023		LOC105369781	-	uncharacterized LOC105369781	ncRNA
150177	chr21	39204201	39204500	+	0	NA	intron (NM_033656, intron 37 of 40)	intron (NM_033656, intron 37 of 40)	-20836	NM_203433	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
190585	chr5	181088301	181088580	+	0	NA	Intergenic	MER90|LTR|ERV1	36864	NM_001258283	26693		NM_001258283	ENSG00000185372	OR2V1	OR2V1P|OST265	olfactory receptor family 2 subfamily V member 1	protein-coding
5291	chr1	25120321	25120580	+	0	NA	Intergenic	Intergenic	96947	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
180046	chr5	1072951	1073500	+	0	NA	intron (NM_006598, intron 17 of 23).2	intron (NM_006598, intron 17 of 23).2	-10251	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
59981	chr13	32311071	32311230	+	0	NA	intron (NM_001136571, intron 3 of 5)	intron (NM_001136571, intron 3 of 5)	4213	NM_001136571	646799		NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1 like	protein-coding
174865	chr4	48724451	48724590	+	0	NA	intron (NM_015030, intron 1 of 63)	L2a|LINE|L2	55759	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
46132	chr11	123038751	123039050	+	0	NA	Intergenic	AluSz6|SINE|Alu	19256	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
221306	chr8	123028971	123029130	+	0	NA	intron (NM_001330601, intron 1 of 6)	AluJb|SINE|Alu	-3278	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
162835	chr3	49275371	49275730	+	0	NA	intron (NM_198562, intron 1 of 2)	AluY|SINE|Alu	1430	NR_036233	100422952		NR_036233	ENSG00000264633	MIR4271	-	microRNA 4271	ncRNA
72610	chr15	37098671	37099350	+	0	NA	promoter-TSS (NM_172315)	promoter-TSS (NM_172315)	-314	NM_172315	4212		NM_002399	ENSG00000134138	MEIS2	CPCMR|HsT18361|MRG1	Meis homeobox 2	protein-coding
838	chr1	1594671	1595430	+	0	NA	Intergenic	Intergenic	-4383	NR_147951	105378586		NR_147951		LOC105378586	-	uncharacterized LOC105378586	ncRNA
73585	chr15	44531701	44531900	+	0	NA	Intergenic	AluYc|SINE|Alu	5100	NR_034171	645212		NR_034170	ENSG00000179523	EIF3J-DT	EIF3J-AS1	EIF3J divergent transcript	ncRNA
235993	chrX	54182071	54183780	+	0	NA	exon (NM_198456, exon 1 of 2)	exon (NM_198456, exon 1 of 2)	329	NM_001300788	54954		NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120 member C	protein-coding
124705	chr2	3581471	3582180	+	0	NA	TTS (NM_001011)	TTS (NM_001011)	6565	NM_001011	6201		NM_001011	ENSG00000171863	RPS7	DBA8|S7|eS7	ribosomal protein S7	protein-coding
12802	chr1	109803971	109804330	+	0	NA	Intergenic	Intergenic	-40227	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
236436	chrX	71531651	71532400	+	0	NA	Intergenic	Charlie13a|DNA|hAT-Charlie	-1079	NM_181673	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
176874	chr4	102628851	102629150	+	0	NA	Intergenic	Intergenic	-126514	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
56084	chr12	110659671	110659830	+	0	NA	intron (NM_032369, intron 4 of 7)	FLAM_C|SINE|Alu	29365	NM_032369	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
194857	chr6	34523471	34524350	+	0	NA	intron (NM_001199583, intron 1 of 9)	MIRc|SINE|MIR	9038	NM_001199583	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
62760	chr13	108206971	108207150	+	0	NA	TTS (NM_001352600)	TTS (NM_001352600)	7722	NM_002312	3981		NM_002312	ENSG00000174405	LIG4	LIG4S	DNA ligase 4	protein-coding
119088	chr19	39252601	39252800	+	0	NA	Intergenic	LTR33|LTR|ERVL	-3844	NM_001276254	101180976		NM_001276254	ENSG00000272395	IFNL4	IFNAN	interferon lambda 4 (gene/pseudogene)	protein-coding
148430	chr20	63966301	63966500	+	0	NA	exon (NM_020713, exon 5 of 17)	exon (NM_020713, exon 5 of 17)	3530	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
83892	chr16	28973921	28975700	+	0	NA	promoter-TSS (NM_001142450)	promoter-TSS (NM_001142450)	32	NM_001142451	83985		NM_032038	ENSG00000169682	SPNS1	HSpin1|LAT|PP2030|SLC62A1|SLC63A1|SPIN1|SPINL|nrs	SPNS lysolipid transporter 1, lysophospholipid	protein-coding
14376	chr1	144148751	144149400	+	0	NA	Intergenic	REP522|Satellite|telo	99130	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
175123	chr4	54961401	54961600	+	0	NA	Intergenic	Intergenic	164095	NM_002253	3791		NM_002253	ENSG00000128052	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor	protein-coding
15349	chr1	149937701	149938250	+	0	NA	3' UTR (NM_020205, exon 12 of 12)	3' UTR (NM_020205, exon 12 of 12)	-1096	NM_001145862	10903		NM_006697	ENSG00000014914	MTMR11	CRA	myotubularin related protein 11	protein-coding
160476	chr3	30603021	30603500	+	0	NA	Intergenic	Intergenic	-3242	NM_001024847	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
11341	chr1	89594871	89595030	+	0	NA	3' UTR (NM_001134476, exon 8 of 8)	3' UTR (NM_001134476, exon 8 of 8)	37944	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
103952	chr17	79905801	79906000	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-13457	NR_110851	101928738		NR_110851	ENSG00000262188	LINC01978	-	long intergenic non-protein coding RNA 1978	ncRNA
83923	chr16	29029001	29029880	+	0	NA	Intergenic	Intergenic	44388	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
196121	chr6	42388501	42389330	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	63136	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
102364	chr17	75519801	75520200	+	0	NA	intron (NM_207346, intron 6 of 10)	L2a|LINE|L2	3472	NM_207346	283989		NM_207346	ENSG00000182173	TSEN54	PCH2A|PCH4|PCH5|SEN54L|sen54	tRNA splicing endonuclease subunit 54	protein-coding
57474	chr12	122031171	122031950	+	0	NA	intron (NM_020993, intron 2 of 5)	MIRb|SINE|MIR	9676	NM_001024808	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
233254	chr9	137275071	137275430	+	0	NA	Intergenic	AluY|SINE|Alu	-2476	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
17069	chr1	156111701	156112000	+	0	NA	intron (NM_001282625, intron 3 of 12)	MIRb|SINE|MIR	-2861	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
125647	chr2	19898351	19898780	+	0	NA	intron (NM_001008237, intron 1 of 2)	intron (NM_001008237, intron 1 of 2)	3418	NM_001008237	130502		NM_001008237	ENSG00000183891	TTC32	-	tetratricopeptide repeat domain 32	protein-coding
62795	chr13	109569371	109569530	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	-158824	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
44775	chr11	112321871	112322030	+	0	NA	intron (NR_126004, intron 2 of 3)	intron (NR_126004, intron 2 of 3)	51201	NR_126004	283140		NR_126004	ENSG00000250303	LINC02762	-	long intergenic non-protein coding RNA 2762	ncRNA
173883	chr4	24563221	24563480	+	0	NA	intron (NM_001358, intron 3 of 13)	7SLRNA|srpRNA|srpRNA	21204	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
190359	chr5	179710521	179711150	+	0	NA	intron (NM_001363997, intron 7 of 14).2	AluSz|SINE|Alu	11868	NM_001746	821		NM_001746	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
158431	chr22	50577171	50578880	+	0	NA	promoter-TSS (NM_001145137)	promoter-TSS (NM_001145137)	-8	NM_001145137	1375		NM_004377	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B	protein-coding
234734	chrX	21947071	21947500	+	0	NA	intron (NM_004595, intron 1 of 10)	intron (NM_004595, intron 1 of 10)	6576	NM_004595	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
94059	chr17	27382871	27383030	+	0	NA	Intergenic	Intergenic	-35055	NR_033892	440419		NR_033892	ENSG00000290422	TBC1D3P5	-	TBC1 domain family member 3 pseudogene 5	pseudo
59596	chr13	27595171	27595330	+	0	NA	intron (NM_153371, intron 1 of 9)	L2c|LINE|L2	25279	NM_153371	222484		NM_153371	ENSG00000139517	LNX2	PDZRN1	ligand of numb-protein X 2	protein-coding
205372	chr7	13990001	13990700	+	0	NA	promoter-TSS (NM_001163147)	promoter-TSS (NM_001163147)	-333	NM_001163147	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
103602	chr17	78721251	78721830	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	2190	NM_001365041	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
3363	chr1	15604521	15604850	+	0	NA	Intergenic	Intergenic	-12773	NM_032341	84301		NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
44614	chr11	108659501	108659700	+	0	NA	Intergenic	AluJr4|SINE|Alu	-5469	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
77767	chr15	85792671	85793300	+	0	NA	intron (NM_022480, intron 1 of 2)	L2b|LINE|L2	1940	NM_022480	64410		NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch like family member 25	protein-coding
43864	chr11	88312771	88313330	+	0	NA	intron (NM_001814, intron 2 of 6)	intron (NM_001814, intron 2 of 6)	24686	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
150924	chr21	44242101	44242930	+	0	NA	Intergenic	CpG-18507	-1549	NM_001363770	102723996		NM_001363770	ENSG00000277117	LOC102723996	-	ICOS ligand	protein-coding
203059	chr6	166244101	166245280	+	0	NA	intron (NR_125862, intron 2 of 4)	intron (NR_125862, intron 2 of 4)	7721	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
7198	chr1	32280771	32281130	+	0	NA	intron (NM_001042771, intron 12 of 12)	MIR3|SINE|MIR	6839	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
133057	chr2	112256621	112256880	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-1708	NM_032494	84524		NM_032494	ENSG00000144161	ZC3H8	Fliz1|ZC3HDC8	zinc finger CCCH-type containing 8	protein-coding
39454	chr11	60970151	60970750	+	0	NA	Intergenic	Intergenic	-1230	NM_006725	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
597	chr1	1296251	1296350	+	0	NA	promoter-TSS (NR_106784)	promoter-TSS (NR_106784)	-130	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
147068	chr20	53737471	53737630	+	0	NA	Intergenic	Intergenic	129196	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
152195	chr22	20112521	20113280	+	0	NA	intron (NM_001257994, intron 11 of 11)	intron (NM_001257994, intron 11 of 11)	1851	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
112115	chr19	5593171	5593330	+	0	NA	intron (NM_014649, intron 15 of 20)	intron (NM_014649, intron 15 of 20)	-25216	NR_027064								
25574	chr10	7817971	7819200	+	0	NA	promoter-TSS (NM_031923)	promoter-TSS (NM_031923)	80	NM_031923	83860		NM_031923	ENSG00000165632	TAF3	TAF140|TAFII-140|TAFII140	TATA-box binding protein associated factor 3	protein-coding
1768	chr1	6031001	6031430	+	0	NA	intron (NM_172130, intron 1 of 14)	intron (NM_172130, intron 1 of 14)	-3473	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
118537	chr19	36060221	36060730	+	0	NA	intron (NM_173636, intron 3 of 31)	L2a|LINE|L2	5578	NM_173636	284403		NM_173636	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
101311	chr17	66518751	66519080	+	0	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-102061	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
129892	chr2	73178551	73178730	+	0	NA	Intergenic	Intergenic	-23934	NM_001134462	344022		NM_001134462	ENSG00000214513	NOTO	-	notochord homeobox	protein-coding
34850	chr11	323651	323950	+	0	NA	Intergenic	AluY|SINE|Alu	-2940	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
51680	chr12	53080821	53081150	+	0	NA	Intergenic	Intergenic	-1595	NM_032840	84926		NM_032840	ENSG00000167778	SPRYD3	-	SPRY domain containing 3	protein-coding
234633	chrX	19888301	19888900	+	0	NA	promoter-TSS (NM_001353891)	promoter-TSS (NM_001353891)	-1000	NM_001353892	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
3894	chr1	17055401	17055750	+	0	NA	Intergenic	L2b|LINE|L2	-1543	NM_003000	6390		NM_003000	ENSG00000117118	SDHB	CWS2|IP|MC2DN4|PGL4|PPGL4|SDH|SDH1|SDH2|SDHIP	succinate dehydrogenase complex iron sulfur subunit B	protein-coding
26197	chr10	14551901	14552330	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	-3478	NM_001320739	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
99331	chr17	49844821	49845780	+	0	NA	promoter-TSS (NR_164135)	promoter-TSS (NR_164135)	-586	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
90959	chr17	2685071	2685230	+	0	NA	3' UTR (NM_000430, exon 11 of 11)	3' UTR (NM_000430, exon 11 of 11)	7769	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
108381	chr18	69580101	69580550	+	0	NA	intron (NM_152721, intron 2 of 7)	MLT1E2|LTR|ERVL-MaLR	110394	NR_134579	105372179		NR_134579	ENSG00000293054	LOC105372179	-	uncharacterized LOC105372179	ncRNA
106899	chr18	25033571	25033800	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	-45706	NR_146903	105372030		NR_146903	ENSG00000264345	LINC01894	-	long intergenic non-protein coding RNA 1894	ncRNA
122382	chr19	49403221	49403680	+	0	NA	intron (NM_144688, intron 9 of 19)	intron (NM_144688, intron 9 of 19)	15201	NM_144688	147872		NM_144688	ENSG00000161609	KASH5	CCDC155|POF22|SPGF88	KASH domain containing 5	protein-coding
42009	chr11	67406471	67407580	+	0	NA	intron (NM_001369495, intron 7 of 8)	intron (NM_001369495, intron 7 of 8)	2942	NM_001369496	374403		NM_198517	ENSG00000175463	TBC1D10C	CARABIN|EPI64C	TBC1 domain family member 10C	protein-coding
82877	chr16	21544301	21544500	+	0	NA	Intergenic	AluSx|SINE|Alu	-23956	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
236897	chrX	85243471	85244230	+	0	NA	promoter-TSS (NM_001375433)	promoter-TSS (NM_001375433)	-71	NM_001367858	340562		NM_001012980	ENSG00000184788	SATL1	-	spermidine/spermine N1-acetyl transferase like 1	protein-coding
39232	chr11	57652121	57653150	+	0	NA	Intergenic	AluSx|SINE|Alu	-2691	NM_001363487	219539		NM_145008	ENSG00000166793	YPEL4	-	yippee like 4	protein-coding
217306	chr8	27389921	27390180	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	-43320	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
164441	chr3	59424421	59425200	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	233687	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
606	chr1	1303951	1304050	+	0	NA	TTS (NR_145806)	TTS (NR_145806)	812	NR_145806	109623456		NR_145806		SNORD167	-	small nucleolar RNA, C/D box 167	snoRNA
147096	chr20	53865621	53866500	+	0	NA	Intergenic	Intergenic	9649	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
224028	chr9	3467621	3468180	+	0	NA	intron (NM_001282116, intron 1 of 16)	intron (NM_001282116, intron 1 of 16)	21534	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
212781	chr7	130059701	130060350	+	0	NA	Intergenic	AluSc|SINE|Alu	-8574	NM_001282191	51530		NM_016478	ENSG00000091732	ZC3HC1	HSPC216|NIPA	zinc finger C3HC-type containing 1	protein-coding
42663	chr11	72570071	72570830	+	0	NA	promoter-TSS (NR_126364)	promoter-TSS (NR_126364)	-206	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
218663	chr8	57802351	57802530	+	0	NA	Intergenic	Intergenic	56291	NR_134276	286178		NR_134276	ENSG00000254139	LINC03018	-	long intergenic non-protein coding RNA 3018	ncRNA
67450	chr14	70808021	70808800	+	0	NA	intron (NM_033141, intron 1 of 12)	intron (NM_033141, intron 1 of 12)	761	NM_001284230	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
203353	chr6	170296651	170297930	+	0	NA	intron (NM_001286380, intron 1 of 10)	CpG-24321	1969	NM_001286380	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
28042	chr10	43252651	43253150	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	14165	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
204680	chr7	5499651	5499950	+	0	NA	intron (NM_024963, intron 3 of 4)	AluJo|SINE|Alu	-3883	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
110119	chr19	1570371	1570900	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-2310	NM_001174118	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
150199	chr21	39351521	39351780	+	0	NA	Intergenic	L1ME3A|LINE|L1	-2562	NM_004965	3150		NM_004965	ENSG00000205581	HMGN1	HMG14	high mobility group nucleosome binding domain 1	protein-coding
121554	chr19	47254721	47254980	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1675	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
132263	chr2	102803371	102803730	+	0	NA	intron (NM_144632, intron 4 of 4)	intron (NM_144632, intron 4 of 4)	41519	NM_144632	130827		NM_144632	ENSG00000170417	TMEM182	-	transmembrane protein 182	protein-coding
201000	chr6	139697171	139697530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-73723	NR_038399	100132735		NR_038399	ENSG00000231426	FILNC1	-	FOXO induced long non-coding RNA 1	ncRNA
111501	chr19	3977301	3978400	+	0	NA	exon (NM_001961, exon 12 of 15)	exon (NM_001961, exon 12 of 15)	4722	NR_002602	26812		NR_002602	ENSG00000206775	SNORD37	RNU37|U37	small nucleolar RNA, C/D box 37	snoRNA
45984	chr11	121481421	121483180	+	0	NA	promoter-TSS (NR_169501)	promoter-TSS (NR_169501)	-511	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
104186	chr17	80427951	80428250	+	0	NA	intron (NR_148043, intron 5 of 5)	intron (NR_148043, intron 5 of 5)	8682	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
145137	chr20	38821371	38821530	+	0	NA	intron (NM_001172735, intron 1 of 9)	L3|LINE|CR1	15753	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
72457	chr15	32361121	32361780	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	-18773	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
29377	chr10	69994301	69994500	+	0	NA	Intergenic	Intergenic	-58446	NM_018649	55506		NM_018649	ENSG00000099284	MACROH2A2	H2AFY2	macroH2A.2 histone	protein-coding
54335	chr12	89665571	89666400	+	0	NA	intron (NM_001366524, intron 1 of 21)	intron (NM_001366524, intron 1 of 21)	42853	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
31510	chr10	96700421	96700680	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	19964	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
207831	chr7	50331601	50332300	+	0	NA	intron (NM_001291840, intron 2 of 2)	L3b|LINE|CR1	12902	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
183144	chr5	75037901	75038100	+	0	NA	intron (NM_001366737, intron 3 of 3)	L1ME4a|LINE|L1	14558	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
228446	chr9	99835051	99835830	+	0	NA	intron (NM_173200, intron 6 of 8)	intron (NM_173200, intron 6 of 8)	13555	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
95930	chr17	38923921	38924530	+	0	NA	promoter-TSS (NR_038847)	promoter-TSS (NR_038847)	-943	NR_038847	100505576		NM_001414697	ENSG00000263874	LASP1NB	LINC00672	LASP1 neighbor	protein-coding
150042	chr21	37372221	37372700	+	0	NA	intron (NM_001347723, intron 1 of 10)	AluJb|SINE|Alu	4903	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
204569	chr7	5228601	5229000	+	0	NA	intron (NM_015610, intron 11 of 12)	AluJb|SINE|Alu	14531	NM_001033520	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
167987	chr3	136735301	136735500	+	0	NA	intron (NM_005862, intron 1 of 33)	AluSq|SINE|Alu	16978	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
105973	chr18	5309751	5310580	+	0	NA	Intergenic	MIR|SINE|MIR	-13112	NM_001243704	7541		NM_003409	ENSG00000198081	ZBTB14	ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478	zinc finger and BTB domain containing 14	protein-coding
134567	chr2	144213721	144214400	+	0	NA	intron (NM_001164629, intron 2 of 11)	intron (NM_001164629, intron 2 of 11)	23279	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
207516	chr7	44802621	44803300	+	0	NA	3' UTR (NM_001300981, exon 6 of 6)	3' UTR (NM_001300981, exon 6 of 6)	6279	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
199820	chr6	127593571	127593730	+	0	NA	Intergenic	L1PA2|LINE|L1	16476	NM_001010905	352999		NM_001010905	ENSG00000184530	C6orf58	LEG1	chromosome 6 open reading frame 58	protein-coding
86845	chr16	67926951	67927250	+	0	NA	intron (NM_006742, intron 2 of 2)	intron (NM_006742, intron 2 of 2)	4762	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
28554	chr10	50614521	50615380	+	0	NA	intron (NM_147156, intron 1 of 10)	intron (NM_147156, intron 1 of 10)	9006	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
201281	chr6	144287771	144288280	+	0	NA	Intergenic	Intergenic	-3712	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
81538	chr16	9105171	9105750	+	0	NA	intron (NM_014117, intron 3 of 3)	intron (NM_014117, intron 3 of 3)	13816	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
219542	chr8	76998001	76998230	+	0	NA	intron (NM_001172086, intron 2 of 4)	intron (NM_001172086, intron 2 of 4)	1963	NM_000318	5828		NM_000318	ENSG00000164751	PEX2	PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3	peroxisomal biogenesis factor 2	protein-coding
71903	chr15	22714521	22715350	+	0	NA	Intergenic	CpG	-42922	NR_040057	283683		NR_040057	ENSG00000274253	LOC283683	-	uncharacterized LOC283683	ncRNA
72935	chr15	40434521	40434930	+	0	NA	intron (NR_148925, intron 13 of 13)	intron (NR_148925, intron 13 of 13)	-5032	NM_001301132	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
17603	chr1	156894621	156895830	+	0	NA	intron (NM_001080471, intron 1 of 22)	intron (NM_001080471, intron 1 of 22)	1507	NM_001353683	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
29668	chr10	72034801	72035000	+	0	NA	Intergenic	AluSz6|SINE|Alu	53651	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
26029	chr10	12350301	12350930	+	0	NA	intron (NM_153498, intron 1 of 10)	intron (NM_153498, intron 1 of 10)	1068	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
91315	chr17	4361051	4361880	+	0	NA	intron (NM_003342, intron 1 of 5)	AluSz|SINE|Alu	5209	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
218764	chr8	58966001	58966850	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	152722	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
79752	chr16	1349301	1349930	+	0	NA	TTS (NM_003933)	TTS (NM_003933)	2263	NM_001001410	115939		NM_001001410	ENSG00000007520	TSR3	C16orf42|HsTsr3	TSR3 ribosome maturation factor	protein-coding
24290	chr1	236529301	236529500	+	0	NA	intron (NM_201544, intron 2 of 9)	AluSx1|SINE|Alu	-4892	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
120756	chr19	45414871	45415030	+	0	NA	exon (NM_001983, exon 7 of 10)	exon (NM_001983, exon 7 of 10)	8306	NM_012099	10849		NM_012099	ENSG00000117877	POLR1G	ASE-1|ASE1|CAST|CD3EAP|PAF49|RPA34	RNA polymerase I subunit G	protein-coding
146385	chr20	49286871	49287750	+	0	NA	intron (NR_003604, intron 4 of 4)	LTR10B1|LTR|ERV1	6627	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
98046	chr17	45437251	45438180	+	0	NA	non-coding (NR_027782, exon 11 of 11)	non-coding (NR_027782, exon 11 of 11)	-4845	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
78700	chr15	97875571	97875730	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-1221	NR_024172	91948		NR_024172	ENSG00000251209	LINC00923	-	long intergenic non-protein coding RNA 923	ncRNA
222212	chr8	133062501	133063630	+	0	NA	intron (NM_001045557, intron 1 of 7)	intron (NM_001045557, intron 1 of 7)	-2711	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
208211	chr7	65217351	65217450	+	0	NA	intron (NR_146906, intron 15 of 17)	L2|LINE|L2	76370	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
134710	chr2	144507251	144507700	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-12139	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
6242	chr1	27547301	27547500	+	0	NA	exon (NM_001371928, exon 8 of 9)	exon (NM_001371928, exon 8 of 9)	56094	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
190053	chr5	177581621	177582100	+	0	NA	Intergenic	AluSc8|SINE|Alu	-10343	NM_017510	54732		NM_017510	ENSG00000184840	TMED9	GMP25|HSGP25L2G|p24a2|p24alpha2|p25	transmembrane p24 trafficking protein 9	protein-coding
181926	chr5	54881271	54882050	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	103933	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
197910	chr6	89375551	89376330	+	0	NA	intron (NM_021244, intron 5 of 6)	hAT-N1_Mam|DNA|hAT-Tip100?	-23218	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
192355	chr6	24547201	24547650	+	0	NA	intron (NM_001168377, intron 18 of 18)	intron (NM_001168377, intron 18 of 18)	35802	NM_001252328	9856		NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
81769	chr16	11503451	11504180	+	0	NA	intron (NM_001370704, intron 8 of 66)	intron (NM_001370704, intron 8 of 66)	23432	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
85761	chr16	56862651	56863380	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-2192	NM_001126107	6559		NM_000339	ENSG00000070915	SLC12A3	NCC|NCCT|TSC	solute carrier family 12 member 3	protein-coding
222983	chr8	143220301	143220630	+	0	NA	Intergenic	Intergenic	7247	NM_178172	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
151407	chr21	46005851	46006280	+	0	NA	Intergenic	TAR1|Satellite|telo	24295	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
24265	chr1	236402301	236402700	+	0	NA	intron (NM_080738, intron 1 of 5)	AluJr|SINE|Alu	7087	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
107201	chr18	36064801	36065000	+	0	NA	intron (NM_001303411, intron 1 of 7)	LTR12D|LTR|ERV1	2659	NM_001303411	55197		NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
79272	chr16	523901	524880	+	0	NA	Intergenic	Intergenic	3017	NR_024121	64493		NR_024121		LINC00235	C16orf10|LA16c-356B8.1|NCRNA00235	long intergenic non-protein coding RNA 235	ncRNA
116409	chr19	17998001	17998680	+	0	NA	exon (NM_002248, exon 11 of 11)	exon (NM_002248, exon 11 of 11)	-2784	NM_001025604	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
12961	chr1	110883521	110883780	+	0	NA	intron (NM_001040033, intron 2 of 8)	L1ME1|LINE|L1	10502	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
93163	chr17	17781071	17781230	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	-1621	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
184893	chr5	112757371	112757980	+	0	NA	intron (NM_001354899, intron 2 of 14)	AluJo|SINE|Alu	19790	NM_001354905	324		NM_000038	ENSG00000134982	APC	BTPS2|DESMD|DP2|DP2.5|DP3|GS|PPP1R46	APC regulator of WNT signaling pathway	protein-coding
153224	chr22	23961671	23961830	+	0	NA	promoter-TSS (NR_126445)	promoter-TSS (NR_126445)	249	NM_001355	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
218286	chr8	42326321	42327180	+	0	NA	intron (NM_001190720, intron 19 of 20)	MER5A|DNA|hAT-Charlie	-11744	NM_002690	5423		NM_002690	ENSG00000070501	POLB	-	DNA polymerase beta	protein-coding
103420	chr17	78240321	78240780	+	0	NA	3' UTR (NM_001204211, exon 5 of 5)	3' UTR (NM_001204211, exon 5 of 5)	-7766	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
50649	chr12	48788371	48789080	+	0	NA	promoter-TSS (NR_110020)	promoter-TSS (NR_110020)	364	NM_015270	112		NM_015270	ENSG00000174233	ADCY6	AC6|LCCS8	adenylate cyclase 6	protein-coding
149252	chr21	25756601	25757000	+	0	NA	intron (NM_002040, intron 5 of 9)	HAL1M8|LINE|L1	-21146	NM_001320267	522		NM_001685	ENSG00000154723	ATP5PF	ATP5|ATP5A|ATP5J|ATPM|CF6|F6	ATP synthase peripheral stalk subunit F6	protein-coding
186637	chr5	138553751	138554780	+	0	NA	3' UTR (NM_004134, exon 17 of 17)	3' UTR (NM_004134, exon 17 of 17)	4776	NR_145752	109617013		NR_145752	ENSG00000222937	SNORD63B	-	small nucleolar RNA, C/D box 63B	snoRNA
232180	chr9	134180601	134180800	+	0	NA	Intergenic	Intergenic	-16136	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
230703	chr9	128769001	128769450	+	0	NA	intron (NM_001375956, intron 1 of 15)	intron (NM_001375956, intron 1 of 15)	2702	NM_006336	10444		NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related cell cycle regulator	protein-coding
132686	chr2	108928251	108928800	+	0	NA	intron (NM_022336, intron 4 of 11)	intron (NM_022336, intron 4 of 11)	60695	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
211216	chr7	102628751	102629430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12332	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
129725	chr2	70900871	70902080	+	0	NA	intron (NM_012476, intron 1 of 2)	CpG	899	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
68343	chr14	77614271	77614630	+	0	NA	intron (NM_004863, intron 1 of 11)	AluY|SINE|Alu	2187	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
123015	chr19	51111271	51111630	+	0	NA	Intergenic	Intergenic	-3041	NM_145232	90353		NM_145232	ENSG00000142544	CTU1	ATPBD3|NCS6	cytosolic thiouridylase subunit 1	protein-coding
198156	chr6	90940701	90941350	+	0	NA	Intergenic	Intergenic	-353953	NM_145332	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
194678	chr6	33676651	33676950	+	0	NA	exon (NM_002224, exon 26 of 58)	exon (NM_002224, exon 26 of 58)	-21328	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
23854	chr1	234763971	234764130	+	0	NA	Intergenic	Intergenic	-3994	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
22334	chr1	214303751	214303850	+	0	NA	intron (NM_020197, intron 1 of 11)	intron (NM_020197, intron 1 of 11)	22641	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
147404	chr20	58837801	58838300	+	0	NA	intron (NR_002785, intron 4 of 4)	intron (NR_002785, intron 4 of 4)	-1698	NM_016592	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
139975	chr2	230891651	230891750	+	0	NA	intron (NR_038238, intron 1 of 3)	intron (NR_038238, intron 1 of 3)	5154	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
7367	chr1	32818901	32819580	+	0	NA	intron (NM_022753, intron 1 of 6)	intron (NM_022753, intron 1 of 6)	-1208	NM_003680	8565		NM_003680	ENSG00000134684	YARS1	CMTDIC|IMNEPD2|TYRRS|YARS|YRS|YTS	tyrosyl-tRNA synthetase 1	protein-coding
144190	chr20	34230171	34230400	+	0	NA	intron (NM_001385218, intron 1 of 3)	SVA_F|Retroposon|SVA	-11138	NM_001672	434		NM_001672	ENSG00000101440	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
230604	chr9	128600921	128601700	+	0	NA	intron (NM_001375310, intron 27 of 57)	intron (NM_001375310, intron 27 of 57)	48723	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
165529	chr3	100590221	100590850	+	0	NA	Intergenic	Intergenic	-19066	NM_032787	84873		NM_032787	ENSG00000144820	ADGRG7	GPR128	adhesion G protein-coupled receptor G7	protein-coding
179621	chr4	186069851	186069950	+	0	NA	intron (NM_003265, intron 1 of 4)	intron (NM_003265, intron 1 of 4)	744	NM_003265	7098		NM_003265	ENSG00000164342	TLR3	CD283|IIAE2|IMD83	toll like receptor 3	protein-coding
47372	chr12	2501971	2502130	+	0	NA	intron (NM_199460, intron 7 of 49)	intron (NM_199460, intron 7 of 49)	170170	NR_046579	100874235		NR_046579	ENSG00000256271	CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
127628	chr2	43123951	43124650	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-21855	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
164712	chr3	68007451	68008350	+	0	NA	intron (NM_213609, intron 2 of 4)	CpG	3653	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
108506	chr18	74146921	74149100	+	0	NA	promoter-TSS (NM_152676)	promoter-TSS (NM_152676)	-176	NM_001142958	201456		NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
100252	chr17	59373921	59374350	+	0	NA	intron (NM_001005404, intron 2 of 4)	MIR3|SINE|MIR	8052	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
29179	chr10	68904371	68904530	+	0	NA	intron (NM_024045, intron 1 of 14)	intron (NM_024045, intron 1 of 14)	3135	NM_024045	79009		NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
158368	chr22	50472301	50472500	+	0	NA	intron (NM_002972, intron 1 of 40)	intron (NM_002972, intron 1 of 40)	2635	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
200561	chr6	136277351	136277650	+	0	NA	intron (NM_001301038, intron 4 of 12)	intron (NM_001301038, intron 4 of 12)	12346	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
110060	chr19	1486901	1487930	+	0	NA	intron (NM_017573, intron 6 of 14)	intron (NM_017573, intron 6 of 14)	3035	NM_017573	54760		NM_017573	ENSG00000115257	PCSK4	PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding
47901	chr12	6748451	6748550	+	0	NA	3' UTR (NM_005439, exon 9 of 9)	3' UTR (NM_005439, exon 9 of 9)	4416	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
97699	chr17	44320021	44320480	+	0	NA	non-coding (NR_159401, exon 10 of 11)	non-coding (NR_159401, exon 10 of 11)	4573	NR_159404	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
67818	chr14	73790051	73790430	+	0	NA	intron (NR_109995, intron 2 of 2)	intron (NR_109995, intron 2 of 2)	2880	NR_109995	100506476		NR_109995		MIDEAS-AS1	-	MIDEAS antisense RNA 1	ncRNA
107080	chr18	35006001	35006280	+	0	NA	intron (NM_001143826, intron 2 of 7)	intron (NM_001143826, intron 2 of 7)	27772	NM_001143827	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
217581	chr8	29518871	29519030	+	0	NA	Intergenic	AluY|SINE|Alu	-168266	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
202716	chr6	158852551	158853900	+	0	NA	intron (NR_028496, intron 2 of 2)	(CA)n|Simple_repeat|Simple_repeat	4407	NR_028496	202459		NM_145303	ENSG00000293101	OSTCP1	DC2L|OSTCL	oligosaccharyltransferase complex subunit pseudogene 1	pseudo
36947	chr11	11010571	11010830	+	0	NA	Intergenic	Intergenic	152483	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
2819	chr1	11029701	11030330	+	0	NA	intron (NM_006610, intron 10 of 10)	intron (NM_006610, intron 10 of 10)	17224	NM_139208	10747		NM_006610	ENSG00000009724	MASP2	MAP-2|MAP19|MASP-2|MASP1P1|sMAP	MBL associated serine protease 2	protein-coding
230954	chr9	129422871	129423730	+	0	NA	Intergenic	Intergenic	-65360	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
216138	chr8	11464451	11465330	+	0	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	1863	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
187195	chr5	140662301	140662500	+	0	NA	TTS (NM_006083)	TTS (NM_006083)	-2399	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
53970	chr12	74535271	74536150	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-2125	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
52264	chr12	54482851	54483030	+	0	NA	Intergenic	AluY|SINE|Alu	-9338	NM_144594	121355		NM_144594	ENSG00000170627	GTSF1	Cue110|FAM112B	gametocyte specific factor 1	protein-coding
160449	chr3	29280821	29281350	+	0	NA	promoter-TSS (NM_001177712)	promoter-TSS (NM_001177712)	14	NM_001003793	27303		NM_014483	ENSG00000144642	RBMS3	-	RNA binding motif single stranded interacting protein 3	protein-coding
67111	chr14	68379571	68380330	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	248837	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
192967	chr6	27869801	27870200	+	0	NA	Intergenic	Intergenic	2346	NM_003533	8354		NM_003533	ENSG00000275379	H3C11	H3.f|H3/f|H3C1|H3C10|H3C12|H3C2|H3C3|H3C4|H3C6|H3C7|H3C8|H3FF|HIST1H3I	H3 clustered histone 11	protein-coding
170812	chr3	189324251	189325350	+	0	NA	3' UTR (NM_198485, exon 6 of 6)	3' UTR (NM_198485, exon 6 of 6)	-84206	NR_046722	100874027		NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
142238	chr20	3115301	3115900	+	0	NA	intron (NM_001267584, intron 3 of 4)	intron (NM_001267584, intron 3 of 4)	8689	NR_038395	100134015		NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
154191	chr22	31343901	31344900	+	0	NA	exon (NM_032051, exon 1 of 3)	exon (NM_032051, exon 1 of 3)	1946	NM_032052	23598		NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ/BTB and AT hook containing zinc finger 1	protein-coding
114111	chr19	11133371	11133730	+	0	NA	3' UTR (NM_001195798, exon 18 of 18)	3' UTR (NM_001195798, exon 18 of 18)	20076	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
219797	chr8	81235071	81236000	+	0	NA	Intergenic	Intergenic	-45001	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
137339	chr2	196138351	196139150	+	0	NA	intron (NM_004226, intron 7 of 7)	AluSx4|SINE|Alu	32828	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
207337	chr7	44062621	44063280	+	0	NA	3' UTR (NM_001284313, exon 11 of 11)	3' UTR (NM_001284313, exon 11 of 11)	2617	NM_000290	5224		NM_000290	ENSG00000164708	PGAM2	GSD10|PGAM-M|PGAMM	phosphoglycerate mutase 2	protein-coding
22653	chr1	223756921	223757380	+	0	NA	intron (NM_001748, intron 10 of 20)	intron (NM_001748, intron 10 of 20)	44611	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
101817	chr17	73551901	73552130	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	38332	NR_135635	101928251		NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA
193135	chr6	29552501	29552950	+	0	NA	Intergenic	MER57F|LTR|ERV1	7007	NM_006398	10537		NM_006398	ENSG00000213886	UBD	FAT10|UBD-3	ubiquitin D	protein-coding
231819	chr9	132485451	132485750	+	0	NA	intron (NM_207417, intron 2 of 6)	Tigger19a|DNA|TcMar-Tigger	75389	NM_207417	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
33294	chr10	114703551	114703980	+	0	NA	intron (NM_001322884, intron 1 of 20)	intron (NM_001322884, intron 1 of 20)	-18762	NM_001322882	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
124936	chr2	8576621	8577080	+	0	NA	intron (NR_110257, intron 4 of 5)	intron (NR_110257, intron 4 of 5)	6942	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
118316	chr19	35511471	35512350	+	0	NA	intron (NM_001126057, intron 3 of 10)	intron (NM_001126057, intron 3 of 10)	-1440	NM_001308383	93099		NM_033317	ENSG00000161249	DMKN	UNQ729|ZD52F10	dermokine	protein-coding
158396	chr22	50516771	50517430	+	0	NA	intron (NM_014551, intron 2 of 8)	intron (NM_014551, intron 2 of 8)	8498	NM_005138	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
26399	chr10	17006351	17006850	+	0	NA	intron (NM_001081, intron 28 of 66)	intron (NM_001081, intron 28 of 66)	123211	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
88592	chr16	85581771	85581930	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-29559	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
175770	chr4	77783171	77783680	+	0	NA	intron (NM_001365006, intron 1 of 11)	intron (NM_001365006, intron 1 of 11)	35639	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
79625	chr16	1106121	1107100	+	0	NA	Intergenic	(CCCCTC)n|Simple_repeat|Simple_repeat	-10366	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
89017	chr16	88118901	88119100	+	0	NA	Intergenic	LTR37A|LTR|ERV1	-18015	NR_120310	400553		NR_120310	ENSG00000205037	LOC400553	-	uncharacterized LOC400553	ncRNA
166058	chr3	108824821	108825080	+	0	NA	intron (NM_001317747, intron 1 of 4)	intron (NM_001317747, intron 1 of 4)	2164	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
137033	chr2	190760351	190761330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	101682	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
108887	chr18	79405571	79407050	+	0	NA	intron (NM_001278673, intron 1 of 8)	intron (NM_001278673, intron 1 of 8)	6011	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
238889	chrX	154573071	154573630	+	0	NA	Intergenic	Intergenic	2102	NR_027401	100132967		NR_027401	ENSG00000279245	FAM223A	CXorf52|LINC00204A|NCRNA00204|NCRNA00204A|SPCX	family with sequence similarity 223 member A	ncRNA
236391	chrX	71107601	71108280	+	0	NA	intron (NM_000206, intron 7 of 7)	intron (NM_000206, intron 7 of 7)	-1200	NM_001025265	158830		NM_001025265	ENSG00000204165	CXorf65	-	chromosome X open reading frame 65	protein-coding
162445	chr3	48447971	48448380	+	0	NA	intron (NM_001271023, intron 1 of 12)	AluSx1|SINE|Alu	1049	NM_001271023	84126		NM_032166	ENSG00000164053	ATRIP	-	ATR interacting protein	protein-coding
32975	chr10	110502051	110502480	+	0	NA	intron (NM_004419, intron 1 of 3)	intron (NM_004419, intron 1 of 3)	4358	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
91233	chr17	3937401	3937600	+	0	NA	exon (NM_005173, exon 15 of 21)	exon (NM_005173, exon 15 of 21)	-21035	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
34418	chr10	132404201	132404430	+	0	NA	intron (NM_138499, intron 1 of 2)	intron (NM_138499, intron 1 of 2)	7115	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
199571	chr6	118899851	118900350	+	0	NA	intron (NM_001378365, intron 7 of 7)	intron (NM_001378365, intron 7 of 7)	5948	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
214785	chr7	151120271	151120630	+	0	NA	intron (NM_001281300, intron 8 of 15)	MIR3|SINE|MIR	5812	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
171257	chr3	195857571	195857730	+	0	NA	intron (NR_134939, intron 1 of 1)	(TA)n|Simple_repeat|Simple_repeat	2754	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
92205	chr17	7853021	7853730	+	0	NA	exon (NM_001080424, exon 22 of 22)	exon (NM_001080424, exon 22 of 22)	-1691	NM_203411	92162		NM_203411	ENSG00000167874	TMEM88	-	transmembrane protein 88	protein-coding
74228	chr15	56537801	56538230	+	0	NA	Intergenic	Intergenic	-72878	NM_018365	55329		NM_018365	ENSG00000138587	MNS1	HTX9|SPATA40	meiosis specific nuclear structural 1	protein-coding
30709	chr10	80664171	80664400	+	0	NA	Intergenic	Intergenic	14488	NR_155749	105378386		NR_155749	ENSG00000231082	LINC02655	-	long intergenic non-protein coding RNA 2655	ncRNA
48564	chr12	10251201	10251600	+	0	NA	intron (NM_001351060, intron 2 of 8)	AluSx|SINE|Alu	12439	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
27918	chr10	41902171	41902550	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	465685	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
111386	chr19	3726001	3726200	+	0	NA	intron (NM_001267561, intron 1 of 20)	intron (NM_001267561, intron 1 of 20)	4363	NM_001267561	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
46676	chr11	128730721	128731480	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-35077	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
57732	chr12	122891401	122891600	+	0	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	4624	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
228479	chr9	99905751	99905850	+	0	NA	promoter-TSS (NM_017919)	promoter-TSS (NM_017919)	801	NR_038853	441461		NR_038853		STX17-DT	STX17-AS1	STX17 divergent transcript	ncRNA
19243	chr1	172658771	172659650	+	0	NA	exon (NM_001302746, exon 1 of 3)	exon (NM_001302746, exon 1 of 3)	107	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
84430	chr16	30383851	30383950	+	0	NA	intron (NM_001214907, intron 1 of 1)	intron (NM_001214907, intron 1 of 1)	-1085	NM_052838	1731		NM_052838	ENSG00000180096	SEPTIN1	DIFF6|LARP|PNUTL3|SEP1|SEPT1|Septin-1	septin 1	protein-coding
88261	chr16	82671771	82672180	+	0	NA	intron (NM_001220488, intron 2 of 14)	intron (NM_001220488, intron 2 of 14)	-16956	NR_107025	102465863		NR_107025	ENSG00000277387	MIR8058	hsa-mir-8058	microRNA 8058	ncRNA
174528	chr4	40173451	40173780	+	0	NA	Intergenic	Intergenic	-17465	NM_001278368	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
63954	chr14	22107751	22108050	+	0	NA	Intergenic	Intergenic	324853	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
75200	chr15	64825091	64826500	+	0	NA	promoter-TSS (NM_025049)	promoter-TSS (NM_025049)	-148	NM_001286497	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
147172	chr20	56458151	56458930	+	0	NA	exon (NM_001164116, exon 7 of 7)	exon (NM_001164116, exon 7 of 7)	-10045	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
54213	chr12	79919451	79919850	+	0	NA	intron (NM_001143885, intron 2 of 25)	L2c|LINE|L2	-5739	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
40547	chr11	64316731	64319380	+	0	NA	promoter-TSS (NM_016404)	promoter-TSS (NM_016404)	-65	NM_001372072	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
194351	chr6	32940301	32942330	+	0	NA	promoter-TSS (NM_002118).3	promoter-TSS (NM_002118).3	-287	NM_002118	3109		NM_002118	ENSG00000242574	HLA-DMB	D6S221E|RING7	major histocompatibility complex, class II, DM beta	protein-coding
49658	chr12	29073701	29073980	+	0	NA	Intergenic	Intergenic	-75438	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
70846	chr14	103699851	103700150	+	0	NA	intron (NM_001371232, intron 7 of 9)	intron (NM_001371232, intron 7 of 9)	15451	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
69749	chr14	98966521	98966980	+	0	NA	Intergenic	Intergenic	255137	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
89834	chr16	89583121	89583630	+	0	NA	intron (NM_014427, intron 3 of 16)	intron (NM_014427, intron 3 of 16)	7617	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
15147	chr1	148900001	148900200	+	0	NA	intron (NM_001195260, intron 2 of 4)	MIR3|SINE|MIR	10540	NM_001002810	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
172348	chr4	1715351	1715850	+	0	NA	TTS (NM_001127266)	TTS (NM_001127266)	-3281	NM_001306074	7884		NM_006527	ENSG00000163950	SLBP	HBP	stem-loop histone mRNA binding protein	protein-coding
202133	chr6	154949901	154950450	+	0	NA	Intergenic	L1M1|LINE|L1	-45140	NM_012454	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
180097	chr5	1155051	1155150	+	0	NA	Intergenic	(CCCCCG)n|Simple_repeat|Simple_repeat	23505	NR_109911	101928857		NR_109911	ENSG00000249201	TERLR1	CTD-3080P12.3	TERT regulating lncRNA 1	ncRNA
145269	chr20	40961451	40962130	+	0	NA	Intergenic	Intergenic	-18923	NR_145524	100128988		NR_145524		LOC100128988	-	uncharacterized LOC100128988	ncRNA
16314	chr1	154184851	154185480	+	0	NA	intron (NM_001364680, intron 2 of 8)	AluSz6|SINE|Alu	-1916	NM_001278190	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
372	chr1	1031071	1032000	+	0	NA	intron (NM_198576, intron 2 of 35)	intron (NM_198576, intron 2 of 35)	-2458	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
44255	chr11	101911221	101911650	+	0	NA	intron (NM_178127, intron 1 of 8)	MSTA|LTR|ERVL-MaLR	-3575	NM_020802	57562		NM_020802	ENSG00000110318	CEP126	KIAA1377	centrosomal protein 126	protein-coding
22555	chr1	222589421	222590600	+	0	NA	promoter-TSS (NR_110613)	promoter-TSS (NR_110613)	51	NR_110614	100506161		NR_110613	ENSG00000225265	TAF1A-AS1	-	TAF1A antisense RNA 1	ncRNA
187575	chr5	142799801	142800390	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	28868	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
178711	chr4	152683951	152684050	+	0	NA	Intergenic	Intergenic	-4003	NM_152680	201799		NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding
220531	chr8	100688471	100689030	+	0	NA	Intergenic	AluSg|SINE|Alu	14274	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
123154	chr19	52193921	52194180	+	0	NA	intron (NR_033500, intron 1 of 13)	AluJo|SINE|Alu	3998	NM_014225	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
53402	chr12	64714251	64715130	+	0	NA	3' UTR (NM_002076, exon 14 of 14)	3' UTR (NM_002076, exon 14 of 14)	44716	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
113101	chr19	8284951	8285050	+	0	NA	Intergenic	Intergenic	23358	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
100350	chr17	59909401	59909600	+	0	NA	intron (NM_001272044, intron 2 of 15)	AluSx4|SINE|Alu	16379	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
104998	chr17	82017871	82018430	+	0	NA	TTS (NM_144998)	TTS (NM_144998)	4728	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
10489	chr1	66372371	66372900	+	0	NA	exon (NM_001297442, exon 10 of 10)	exon (NM_001297442, exon 10 of 10)	18100	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
6563	chr1	28687201	28687400	+	0	NA	intron (NM_024482, intron 2 of 9)	AluJo|SINE|Alu	18516	NM_001319674	10691		NM_006582	ENSG00000162419	GMEB1	P96PIF|PIF96	glucocorticoid modulatory element binding protein 1	protein-coding
142825	chr20	17431801	17432050	+	0	NA	intron (NM_002594, intron 7 of 11)	intron (NM_002594, intron 7 of 11)	99454	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
220816	chr8	102804201	102804850	+	0	NA	Intergenic	Intergenic	-2297	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
154571	chr22	36262451	36262750	+	0	NA	intron (NM_145343, intron 6 of 6)	MER96|DNA|hAT-Tip100	9467	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
79523	chr16	808951	809450	+	0	NA	intron (NM_001013638, intron 2 of 2)	AluSz|SINE|Alu	3757	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
44133	chr11	96121751	96122050	+	0	NA	intron (NM_032427, intron 1 of 4)	AluY|SINE|Alu	-197793	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
13897	chr1	119675351	119675780	+	0	NA	Intergenic	Intergenic	-27299	NM_001080470	90874		NM_138366	ENSG00000143067	ZNF697	-	zinc finger protein 697	protein-coding
165038	chr3	71424921	71425200	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	117029	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
8509	chr1	40877471	40877980	+	0	NA	Intergenic	Intergenic	-15362	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
181544	chr5	43086701	43087230	+	0	NA	intron (NR_102752, intron 2 of 2)	SVA_E|Retroposon|SVA	-19526	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
144570	chr20	35769051	35770050	+	0	NA	Intergenic	L2c|LINE|L2	-2465	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
138878	chr2	217223451	217223750	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-59133	NR_133642	105373877		NR_133642		DIRC3-AS1	-	DIRC3 antisense RNA 1	ncRNA
163702	chr3	52272901	52274130	+	0	NA	intron (NM_025222, intron 1 of 8)	intron (NM_025222, intron 1 of 8)	5134	NM_025222	80335		NM_025222	ENSG00000164091	WDR82	MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A	WD repeat domain 82	protein-coding
171781	chr4	224101	224300	+	0	NA	intron (NR_027481, intron 1 of 1)	L1MA9|LINE|L1	11600	NR_027481	642280		NM_001039758	ENSG00000290382	ZNF876P	-	zinc finger protein 876, pseudogene	pseudo
23039	chr1	226486171	226486530	+	0	NA	Intergenic	L1MA4|LINE|L1	-62414	NM_001003665	375057		NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
227367	chr9	89488171	89488600	+	0	NA	intron (NM_001371194, intron 1 of 15)	AluSx|SINE|Alu	7271	NM_001371198	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
61478	chr13	52445521	52445850	+	0	NA	intron (NM_001282168, intron 1 of 13)	AluY|SINE|Alu	4559	NM_001282169	51028		NM_016075	ENSG00000136100	VPS36	C13orf9|CGI-145|EAP45	vacuolar protein sorting 36 homolog	protein-coding
234850	chrX	24647021	24647700	+	0	NA	promoter-TSS (NM_004845)	promoter-TSS (NM_004845)	-13	NM_001163265	9468		NM_004845	ENSG00000102230	PCYT1B	CCTB|CTB	phosphate cytidylyltransferase 1B, choline	protein-coding
73644	chr15	44681851	44682150	+	0	NA	Intergenic	Intergenic	-5112	NM_001145112	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
209844	chr7	90149601	90149800	+	0	NA	intron (NR_110029, intron 2 of 2)	intron (NR_110029, intron 2 of 2)	-4769	NM_012449	26872		NM_012449	ENSG00000164647	STEAP1	PRSS24|STEAP	STEAP family member 1	protein-coding
95704	chr17	38504571	38504930	+	0	NA	intron (NM_001199417, intron 23 of 23).2	intron (NM_001199417, intron 23 of 23).2	76286	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
91155	chr17	3766721	3767530	+	0	NA	intron (NM_002208, intron 2 of 30)	AluSq2|SINE|Alu	34063	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
125403	chr2	11681951	11682500	+	0	NA	intron (NM_001349207, intron 1 of 20)	intron (NM_001349207, intron 1 of 20)	4681	NM_001349208	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
124005	chr19	55459701	55459900	+	0	NA	intron (NM_024710, intron 1 of 5)	intron (NM_024710, intron 1 of 5)	1842	NM_001136201	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
12872	chr1	110198121	110198380	+	0	NA	exon (NM_001010898, exon 12 of 12)	exon (NM_001010898, exon 12 of 12)	11737	NR_046546	100873974		NR_046546		KCNC4-DT	KCNC4-AS1|LINC02586	KCNC4 divergent transcript	ncRNA
128488	chr2	58237771	58238130	+	0	NA	intron (NR_164659, intron 1 of 11)	MLT1F1|LTR|ERVL-MaLR	3357	NR_164659	55120		NM_018062	ENSG00000115392	FANCL	FAAP43|PHF9|POG	FA complementation group L	protein-coding
5419	chr1	25549401	25550600	+	0	NA	intron (NM_015627, intron 1 of 8)	intron (NM_015627, intron 1 of 8)	6394	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
121685	chr19	47516621	47516880	+	0	NA	Intergenic	L1MC3|LINE|L1	-1687	NR_038456	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
59382	chr13	24763851	24764350	+	0	NA	promoter-TSS (NM_001184993)	promoter-TSS (NM_001184993)	-69	NM_001184993	56163		NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
187462	chr5	142127251	142127930	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	18811	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
149350	chr21	29089971	29090430	+	0	NA	intron (NM_001371374, intron 3 of 11)	intron (NM_001371374, intron 3 of 11)	-2054	NM_001286619	56911		NM_020152	ENSG00000156265	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
196890	chr6	52284251	52285730	+	0	NA	promoter-TSS (NM_002388)	promoter-TSS (NM_002388)	-248	NM_001270472	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
180746	chr5	32018021	32018480	+	0	NA	intron (NM_178140, intron 6 of 24)	intron (NM_178140, intron 6 of 24)	-82091	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
162363	chr3	47847871	47848030	+	0	NA	exon (NM_138615, exon 14 of 22)	exon (NM_138615, exon 14 of 22)	-1605	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
121418	chr19	47004901	47005350	+	0	NA	TTS (NM_004491)	TTS (NM_004491)	-14712	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
14548	chr1	144880501	144881050	+	0	NA	intron (NR_104189, intron 2 of 3).2	MER4D1|LTR|ERV1	162604	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
128615	chr2	61175171	61175700	+	0	NA	Intergenic	Intergenic	-1983	NR_152211	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
204148	chr7	2380421	2380680	+	0	NA	3' UTR (NM_001362792, exon 20 of 20)	3' UTR (NM_001362792, exon 20 of 20)	-23061	NM_001243795	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
174333	chr4	38677321	38677980	+	0	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-13022	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
145728	chr20	45054321	45055080	+	0	NA	intron (NM_001352385, intron 11 of 11)	MIRb|SINE|MIR	46427	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
159351	chr3	13233621	13235880	+	0	NA	intron (NM_001376938, intron 1 of 15)	intron (NM_001376938, intron 1 of 15)	48507	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
78934	chr15	101256751	101257350	+	0	NA	Intergenic	Intergenic	-5002	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
59518	chr13	27146121	27146380	+	0	NA	intron (NR_046547, intron 1 of 2)	AluSx1|SINE|Alu	20717	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
160065	chr3	18678971	18679850	+	0	NA	Intergenic	Intergenic	-233818	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
114477	chr19	12746871	12747030	+	0	NA	intron (NM_001371488, intron 5 of 7)	AluSx|SINE|Alu	-4841	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
159678	chr3	15461201	15461800	+	0	NA	intron (NM_080538, intron 12 of 16)	intron (NM_080538, intron 12 of 16)	33902	NM_033083	85403		NM_033083	ENSG00000144597	EAF1	-	ELL associated factor 1	protein-coding
207012	chr7	38362251	38363090	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	21093	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
72843	chr15	40162751	40162850	+	0	NA	intron (NM_001211, intron 1 of 22)	intron (NM_001211, intron 1 of 22)	1731	NM_001211	701		NM_001211	ENSG00000156970	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
112440	chr19	6369501	6370200	+	0	NA	3' UTR (NM_006012, exon 6 of 6)	3' UTR (NM_006012, exon 6 of 6)	-2944	NM_032306	84266		NM_032306	ENSG00000125652	ALKBH7	ABH7|SPATA11|UNQ6002	alkB homolog 7	protein-coding
47124	chr12	689571	689730	+	0	NA	Intergenic	MER51E|LTR|ERV1	-26205	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
150546	chr21	43076301	43077100	+	0	NA	promoter-TSS (NM_001354009).2	promoter-TSS (NM_001354009).2	161	NM_001320298	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
56148	chr12	111328071	111329130	+	0	NA	intron (NM_015267, intron 18 of 21)	(TG)n|Simple_repeat|Simple_repeat	24458	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
68794	chr14	91229511	91230700	+	0	NA	Intergenic	Intergenic	14599	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
185657	chr5	131553121	131553380	+	0	NA	intron (NM_016340, intron 5 of 27)	L1MCc|LINE|L1	81979	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
151643	chr22	16603821	16604130	+	0	NA	intron (NR_001591, intron 1 of 8)	intron (NR_001591, intron 1 of 8)	2064	NR_001591	387590		NR_001591	ENSG00000290418	TPTEP1	psiTPTE22	TPTE pseudogene 1	pseudo
34285	chr10	131918671	131919400	+	0	NA	intron (NM_001291310, intron 3 of 9)	intron (NM_001291310, intron 3 of 9)	18027	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
109829	chr19	1176801	1177200	+	0	NA	Intergenic	AluYh7|SINE|Alu	-2732	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
90652	chr17	1674451	1675030	+	0	NA	intron (NM_006445, intron 20 of 42)	intron (NM_006445, intron 20 of 42)	10127	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
1659	chr1	3883421	3884230	+	0	NA	non-coding (NR_135152, exon 7 of 7)	non-coding (NR_135152, exon 7 of 7)	16447	NM_207356	339448		NM_207356	ENSG00000198912	C1orf174	-	chromosome 1 open reading frame 174	protein-coding
56841	chr12	120242671	120243230	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	7213	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
155426	chr22	38450971	38451130	+	0	NA	intron (NM_152868, intron 1 of 1)	MIRb|SINE|MIR	4149	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
126822	chr2	30622201	30622800	+	0	NA	intron (NM_001304445, intron 7 of 7)	L1PBa|LINE|L1	175254	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
185907	chr5	132813301	132814800	+	0	NA	exon (NM_175873, exon 1 of 1)	exon (NM_175873, exon 1 of 1)	748	NM_175873	134548		NM_175873	ENSG00000198944	SOWAHA	ANKRD43	sosondowah ankyrin repeat domain family member A	protein-coding
174039	chr4	26868571	26868930	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	7909	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
162069	chr3	46867771	46868200	+	0	NA	Intergenic	Intergenic	-4541	NM_000258	4634		NM_000258	ENSG00000160808	MYL3	CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl	myosin light chain 3	protein-coding
147592	chr20	61985821	61986480	+	0	NA	intron (NM_003185, intron 14 of 14)	intron (NM_003185, intron 14 of 14)	-32488	NR_031658	100302168		NR_031658	ENSG00000284193	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
84331	chr16	30181371	30181680	+	0	NA	Intergenic	AluSz|SINE|Alu	-1885	NM_001193333	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
222163	chr8	132774751	132776130	+	0	NA	promoter-TSS (NM_198513)	promoter-TSS (NM_198513)	52	NR_156424	51105		NM_016018	ENSG00000129292	PHF20L1	CGI-72|TDRD20B|URLC1	PHD finger protein 20 like 1	protein-coding
39688	chr11	61731571	61732230	+	0	NA	intron (NM_006133, intron 9 of 19)	intron (NM_006133, intron 9 of 19)	-20736	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
55790	chr12	108631601	108632690	+	0	NA	promoter-TSS (NM_001206609)	promoter-TSS (NM_001206609)	-64	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
3662	chr1	16411771	16411930	+	0	NA	intron (NM_001353349, intron 2 of 10)	L2|LINE|L2	25574	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
191652	chr6	13383501	13384430	+	0	NA	intron (NM_018988, intron 1 of 1)	AluSx|SINE|Alu	24172	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
151744	chr22	17784951	17786280	+	0	NA	Intergenic	Intergenic	8325	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
199191	chr6	111776071	111776330	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-16283	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
132112	chr2	101479901	101480100	+	0	NA	Intergenic	Intergenic	-4888	NM_001367509	731220		NM_207403	ENSG00000196460	RFX8	-	regulatory factor X8	protein-coding
20656	chr1	200139701	200139930	+	0	NA	intron (NM_205860, intron 7 of 7)	MER91C|DNA|hAT-Tip100	96990	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
237917	chrX	131986571	131986730	+	0	NA	Intergenic	Intergenic	-36652	NM_001042453	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
198203	chr6	97186401	97186730	+	0	NA	exon (NM_001350599, exon 15 of 25)	exon (NM_001350599, exon 15 of 25)	96651	NM_198468	253714		NM_198468	ENSG00000146263	MMS22L	C6orf167|dJ39B17.2	MMS22 like, DNA repair protein	protein-coding
107919	chr18	57619271	57619630	+	0	NA	intron (NM_004539, intron 2 of 13)	AluJb|SINE|Alu	2386	NM_004539	4677		NM_004539	ENSG00000134440	NARS1	ASNRS|NARS|NEDMILEG|NEDMILG	asparaginyl-tRNA synthetase 1	protein-coding
142547	chr20	5118321	5118580	+	0	NA	intron (NM_182649, intron 3 of 5)	AluJr4|SINE|Alu	-1136	NR_028370	100302739		NR_028370		PCNA-AS1	PCNA-AS|PCNAAS	PCNA antisense RNA 1	ncRNA
104966	chr17	81967621	81968480	+	0	NA	Intergenic	Intergenic	-6863	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
71062	chr14	104815271	104817050	+	0	NA	Intergenic	CpG	-5041	NR_024396	196872		NM_152646	ENSG00000258701	VESTAR	LINC00638	VEGFC mRNA stability associated lncRNA	ncRNA
140829	chr2	236559221	236559630	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-10400	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
195288	chr6	36519101	36519500	+	0	NA	intron (NM_007271, intron 5 of 13)	intron (NM_007271, intron 5 of 13)	28179	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
76508	chr15	74958321	74958800	+	0	NA	Intergenic	Intergenic	-1788	NM_017793	54913		NM_017793	ENSG00000178718	RPP25	-	ribonuclease P and MRP subunit p25	protein-coding
144327	chr20	34955171	34956800	+	0	NA	promoter-TSS (NM_001322495)	promoter-TSS (NM_001322495)	42	NM_001322494	2937		NM_000178	ENSG00000100983	GSS	GSHS|HEL-S-64p|HEL-S-88n	glutathione synthetase	protein-coding
215158	chr7	155532921	155533480	+	0	NA	intron (NM_001369813, intron 2 of 4)	CpG	662	NR_163158	285888		NM_001103176	ENSG00000146910	CNPY1	-	canopy FGF signaling regulator 1	protein-coding
55765	chr12	108562101	108563100	+	0	NA	promoter-TSS (NM_213595)	promoter-TSS (NM_213595)	4	NM_213595	23479		NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
86933	chr16	68099221	68099680	+	0	NA	intron (NM_173165, intron 1 of 9)	intron (NM_173165, intron 1 of 9)	14080	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
157775	chr22	46748271	46748430	+	0	NA	Intergenic	Intergenic	-10098	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
191902	chr6	15398651	15399480	+	0	NA	intron (NM_001267040, intron 2 of 17)	intron (NM_001267040, intron 2 of 17)	150210	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
167167	chr3	128071951	128072580	+	0	NA	TTS (NM_013336)	TTS (NM_013336)	-3545	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
184771	chr5	110590351	110590450	+	0	NA	intron (NM_001039763, intron 10 of 13)	MER1B|DNA|hAT-Charlie	-76485	NR_031644	100302159		NR_031644	ENSG00000221436	MIR548F3	MIR548F-3|MIRN548F3|hsa-mir-548f-3	microRNA 548f-3	ncRNA
165974	chr3	108067971	108068200	+	0	NA	intron (NM_198793, intron 3 of 8)	intron (NM_198793, intron 3 of 8)	22946	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
219046	chr8	65781171	65781530	+	0	NA	intron (NM_001242318, intron 2 of 12)	L2a|LINE|L2	7707	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
28213	chr10	44996351	44996450	+	0	NA	TTS (NM_032023)	TTS (NM_032023)	4403	NR_126421	220979		NM_145022	ENSG00000165511	ZNF22-AS1	C10orf25	ZNF22 antisense RNA 1	ncRNA
37146	chr11	13486851	13487850	+	0	NA	Intergenic	LTR12D|LTR|ERV1	8647	NM_000315	5741		NM_000315	ENSG00000152266	PTH	FIH1|PTH1	parathyroid hormone	protein-coding
144243	chr20	34499171	34499330	+	0	NA	intron (NM_031483, intron 23 of 24)	AluY|SINE|Alu	-16352	NR_168136	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
89059	chr16	88448151	88448730	+	0	NA	Intergenic	Intergenic	-4840	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
44880	chr11	114320101	114320300	+	0	NA	Intergenic	Intergenic	23801	NM_006169	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
213369	chr7	135901651	135901950	+	0	NA	Intergenic	Intergenic	75559	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
99430	chr17	50113921	50114500	+	0	NA	exon (NM_001257359, exon 8 of 10)	exon (NM_001257359, exon 8 of 10)	15950	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
98204	chr17	46130571	46131030	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	61982	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
42565	chr11	71919771	71919930	+	0	NA	intron (NM_001375847, intron 2 of 5)	AluY|SINE|Alu	8609	NM_001375848	100133315		NM_001375847	ENSG00000254469	XNDC1N	-	XRCC1 N-terminal domain containing 1, N-terminal like	protein-coding
212257	chr7	121547501	121547780	+	0	NA	Intergenic	Intergenic	-151272	NM_001040020	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
154820	chr22	37050171	37050330	+	0	NA	Intergenic	AluSz|SINE|Alu	-1486	NM_001282684	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
147747	chr20	62408551	62409230	+	0	NA	Intergenic	Intergenic	-1607	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
90917	chr17	2593001	2594880	+	0	NA	5' UTR (NM_000430, exon 1 of 11)	5' UTR (NM_000430, exon 1 of 11)	286	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
38974	chr11	47562201	47562630	+	0	NA	intron (NM_001376458, intron 1 of 13)	AluJb|SINE|Alu	-3015	NM_001143984	114971		NM_175732	ENSG00000110536	PTPMT1	DUSP23|MOSP|PLIP|PNAS-129	protein tyrosine phosphatase mitochondrial 1	protein-coding
180779	chr5	32176201	32176930	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2246	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
9049	chr1	44806801	44808900	+	0	NA	promoter-TSS (NM_001377535)	promoter-TSS (NM_001377535)	-499	NM_001377535	343521		NM_001013632	ENSG00000188396	DYNLT4	TCTEX1D4	dynein light chain Tctex-type 4	protein-coding
67896	chr14	74502201	74502400	+	0	NA	intron (NM_000428, intron 34 of 35)	intron (NM_000428, intron 34 of 35)	8535	NM_194279	122961		NM_194279	ENSG00000165898	ISCA2	HBLD1|ISA2|MMDS4|c14_5557	iron-sulfur cluster assembly 2	protein-coding
146157	chr20	48721371	48721530	+	0	NA	intron (NM_020820, intron 5 of 39)	L2a|LINE|L2	106549	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
208659	chr7	73124251	73124350	+	0	NA	intron (NM_001382504, intron 2 of 9)	intron (NM_001382504, intron 2 of 9)	-30624	NR_003580	100093631		NR_003580	ENSG00000293241	GTF2IP4	GTF2I	general transcription factor IIi pseudogene 4	pseudo
191535	chr6	11413871	11414030	+	0	NA	Intergenic	L1MB7|LINE|L1	-31602	NR_073131	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
138657	chr2	212816321	212816580	+	0	NA	intron (NR_131941, intron 2 of 4)	MLT1B|LTR|ERVL-MaLR	21119	NR_131941	102725079		NR_131941	ENSG00000234308	LINC01878	-	long intergenic non-protein coding RNA 1878	ncRNA
214553	chr7	150556471	150557200	+	0	NA	Intergenic	LTR49-int|LTR|ERV1	-10535	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
51037	chr12	49763971	49764130	+	0	NA	3' UTR (NM_003217, exon 10 of 10)	3' UTR (NM_003217, exon 10 of 10)	22241	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
64570	chr14	24674301	24675150	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-40535	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
42590	chr11	72037801	72038850	+	0	NA	intron (NR_104476, intron 2 of 24)	intron (NR_104476, intron 2 of 24)	24034	NR_104178	100128494		NR_104178	ENSG00000251143	LOC100128494	-	uncharacterized LOC100128494	ncRNA
94834	chr17	31438251	31438350	+	0	NA	intron (NM_032932, intron 3 of 14)	intron (NM_032932, intron 3 of 14)	46625	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
49484	chr12	25221101	25221700	+	0	NA	intron (NM_033360, intron 4 of 5)	AluSx1|SINE|Alu	26163	NM_001001660	144363		NM_001001660	ENSG00000205707	ETFRF1	LYRM5	electron transfer flavoprotein regulatory factor 1	protein-coding
193429	chr6	30469451	30470100	+	0	NA	Intergenic	Intergenic	-19734	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
2554	chr1	9736971	9737330	+	0	NA	intron (NM_001302883, intron 10 of 17)	intron (NM_001302883, intron 10 of 17)	45683	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
234782	chrX	23953901	23954180	+	0	NA	Intergenic	L1MC4a|LINE|L1	46034	NM_001169574	254158		NM_152761	ENSG00000165182	CXorf58	-	chromosome X open reading frame 58	protein-coding
122280	chr19	49072621	49073300	+	0	NA	promoter-TSS (NM_031886)	promoter-TSS (NM_031886)	-19	NM_031886	3743		NM_031886	ENSG00000104848	KCNA7	HAK6|KV1.7	potassium voltage-gated channel subfamily A member 7	protein-coding
152575	chr22	21120951	21121250	+	0	NA	non-coding (NR_037566, exon 6 of 6)	non-coding (NR_037566, exon 6 of 6)	18084	NR_037566	400892		NM_207474	ENSG00000291044	BCRP2	BCR-2|BCR2|BCRL2	BCR pseudogene 2	pseudo
144821	chr20	36792551	36792730	+	0	NA	intron (NM_080627, intron 14 of 14)	intron (NM_080627, intron 14 of 14)	-18877	NM_001145318	79980		NM_024918	ENSG00000149636	DSN1	C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3	DSN1 component of MIS12 kinetochore complex	protein-coding
192187	chr6	17689471	17690600	+	0	NA	intron (NM_001278209, intron 1 of 22)	MIR|SINE|MIR	-16095	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
138907	chr2	218067721	218067980	+	0	NA	intron (NR_034176, intron 3 of 13)	intron (NR_034176, intron 3 of 13)	-1165	NM_198483	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
208909	chr7	74028301	74028880	+	0	NA	intron (NM_001278918, intron 1 of 27)	intron (NM_001278918, intron 1 of 27)	417	NM_001278917	2006		NM_000501	ENSG00000049540	ELN	ADCL1|SVAS|WBS|WS	elastin	protein-coding
170304	chr3	184337651	184338030	+	0	NA	promoter-TSS (NM_001366133)	promoter-TSS (NM_001366133)	240	NM_144635	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
211348	chr7	104951521	104951780	+	0	NA	Intergenic	AluSc5|SINE|Alu	-25005	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
239321	chrY	17992351	17992450	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-33387	NM_004825	9426		NM_004825	ENSG00000182415	CDY2A	CDY|CDY2	chromodomain Y-linked 2A	protein-coding
104612	chr17	81418501	81419700	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-18322	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
131759	chr2	98468051	98468150	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	22090	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
201757	chr6	149936751	149937150	+	0	NA	TTS (NR_134598)	TTS (NR_134598)	2437	NR_134598	105378052		NR_134598	ENSG00000293239	LOC105378052	-	uncharacterized LOC105378052	ncRNA
219373	chr8	70377701	70378150	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	25465	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
232960	chr9	136955671	136955980	+	0	NA	TTS (NM_178536)	TTS (NM_178536)	3552	NM_178536	286256		NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
94017	chr17	26938001	26938400	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	151041	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
82608	chr16	18902501	18902950	+	0	NA	intron (NM_015092, intron 1 of 62)	MER77B|LTR|ERVL	23683	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
5744	chr1	26472601	26474000	+	0	NA	intron (NM_005517, intron 1 of 5)	CpG	860	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
17505	chr1	156740501	156742130	+	0	NA	promoter-TSS (NM_145729)	promoter-TSS (NM_145729)	-227	NM_145729	79590		NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24|uL24m	mitochondrial ribosomal protein L24	protein-coding
170031	chr3	181701851	181702230	+	0	NA	intron (NR_075089, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	-9885	NM_003106	6657		NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box transcription factor 2	protein-coding
51814	chr12	53438451	53439050	+	0	NA	Intergenic	AluYa5|SINE|Alu	-2899	NM_001005354	54458		NM_018457	ENSG00000205352	PRR13	TXR1	proline rich 13	protein-coding
142792	chr20	13458971	13459150	+	0	NA	intron (NR_136629, intron 9 of 11)	L2a|LINE|L2	179872	NM_017714	55617		NM_017714	ENSG00000089123	TASP1	C20orf13|SULEHS|dJ585I14.2	taspase 1	protein-coding
11440	chr1	89820621	89822280	+	0	NA	promoter-TSS (NM_018103)	promoter-TSS (NM_018103)	418	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
152462	chr22	20706371	20706830	+	0	NA	Intergenic	AluSx|SINE|Alu	5486	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
43304	chr11	76208731	76209800	+	0	NA	Intergenic	CpG-4722	-2763	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
122001	chr19	48577301	48577700	+	0	NA	intron (NM_177973, intron 2 of 6)	AluSc8|SINE|Alu	1764	NM_004605	6820		NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
8532	chr1	41017271	41017580	+	0	NA	non-coding (NR_037868, exon 1 of 4)	non-coding (NR_037868, exon 1 of 4)	2835	NR_037868	100507178		NR_037868	ENSG00000281207	SLFNL1-AS1	-	SLFNL1 antisense RNA 1	ncRNA
108002	chr18	58692651	58693650	+	0	NA	intron (NM_173844, intron 2 of 15)	Tigger1|DNA|TcMar-Tigger	-21277	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
112054	chr19	5144551	5145050	+	0	NA	exon (NM_015015, exon 21 of 23)	exon (NM_015015, exon 21 of 23)	175687	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
122334	chr19	49155801	49156800	+	0	NA	promoter-TSS (NM_002152)	promoter-TSS (NM_002152)	-904	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
162110	chr3	46913321	46914380	+	0	NA	Intergenic	Intergenic	31601	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
16154	chr1	153706271	153706430	+	0	NA	Intergenic	AluY|SINE|Alu	-16557	NR_107050	102466879		NR_107050	ENSG00000274940	MIR8083	hsa-mir-8083	microRNA 8083	ncRNA
205270	chr7	8190101	8190650	+	0	NA	intron (NR_146926, intron 6 of 13)	intron (NR_146926, intron 6 of 13)	71792	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
197089	chr6	56915001	56915400	+	0	NA	intron (NM_001374736, intron 2 of 103)	intron (NM_001374736, intron 2 of 103)	39630	NM_001374722	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
172216	chr4	1307621	1308280	+	0	NA	intron (NR_123716, intron 1 of 6)	MLT2B2|LTR|ERVL	-1493	NM_001297432	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
167239	chr3	128488701	128489800	+	0	NA	promoter-TSS (NM_001145661)	promoter-TSS (NM_001145661)	47	NR_125398	101927167		NR_125398		GATA2-AS1	-	GATA2 antisense RNA 1	ncRNA
235456	chrX	46546901	46547100	+	0	NA	non-coding (NR_015378, exon 2 of 2)	non-coding (NR_015378, exon 2 of 2)	1510	NR_015378	401588		NR_015378	ENSG00000230844	ZNF674-AS1	-	ZNF674 antisense RNA 1 (head to head)	ncRNA
28335	chr10	46586601	46586900	+	0	NA	intron (NM_181519, intron 7 of 8)	AluSc|SINE|Alu	7622	NM_181519	83849		NM_031912	ENSG00000204176	SYT15	CHR10SYT|SYT15B|sytXV	synaptotagmin 15	protein-coding
200423	chr6	134908951	134909400	+	0	NA	Intergenic	Intergenic	40926	NM_170771	64577		NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding
219079	chr8	65832601	65833450	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	9039	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
227605	chr9	92729301	92729700	+	0	NA	intron (NM_001003800, intron 1 of 6)	intron (NM_001003800, intron 1 of 6)	35333	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
195693	chr6	38658551	38658850	+	0	NA	Intergenic	L1MB8|LINE|L1	-18771	NM_001099272	114781		NM_052893	ENSG00000183826	BTBD9	dJ322I12.1	BTB domain containing 9	protein-coding
54554	chr12	92161101	92161500	+	0	NA	intron (NR_135037, intron 3 of 3)	L2a|LINE|L2	15215	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
216727	chr8	22430101	22430830	+	0	NA	intron (NM_001135154, intron 8 of 8)	L2a|LINE|L2	-10505	NM_001243974	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
133700	chr2	127220901	127221100	+	0	NA	promoter-TSS (NM_001367502)	promoter-TSS (NM_001367502)	-701	NM_001367501	339761		NM_001001665	ENSG00000186684	CYP27C1	-	cytochrome P450 family 27 subfamily C member 1	protein-coding
197383	chr6	73491821	73492080	+	0	NA	intron (NM_133645, intron 10 of 12)	AluSx3|SINE|Alu	26488	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
205543	chr7	20217301	20217580	+	0	NA	promoter-TSS (NM_182762)	promoter-TSS (NM_182762)	-56	NM_182762	346389		NM_182762	ENSG00000183742	MACC1	7A5|SH3BP4L	MET transcriptional regulator MACC1	protein-coding
65294	chr14	50059901	50060100	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	45043	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
102856	chr17	76491601	76492150	+	0	NA	intron (NR_164786, intron 1 of 19)	intron (NR_164786, intron 1 of 19)	9548	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
176691	chr4	101009371	101010080	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	231147	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
18597	chr1	165606601	165606800	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-24534	NM_004528	4259		NM_004528	ENSG00000143198	MGST3	GST-3|GST-III	microsomal glutathione S-transferase 3	protein-coding
222310	chr8	133491321	133492450	+	0	NA	intron (NM_173344, intron 3 of 9)	(GCCCAG)n|Simple_repeat|Simple_repeat	80002	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
185878	chr5	132665321	132665780	+	0	NA	Intergenic	L2a|LINE|L2	7377	NM_002188	3596		NM_002188	ENSG00000169194	IL13	IL-13|P600	interleukin 13	protein-coding
227955	chr9	94839151	94839780	+	0	NA	intron (NM_032823, intron 5 of 14)	AluSc|SINE|Alu	29503	NR_031755	100313780		NR_031755	ENSG00000252153	MIR2278	mir-2278	microRNA 2278	ncRNA
19012	chr1	169623521	169623980	+	0	NA	intron (NM_003005, intron 1 of 16)	intron (NM_003005, intron 1 of 16)	6374	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
96589	chr17	40519001	40519850	+	0	NA	Intergenic	Intergenic	-17802	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
97992	chr17	45284121	45284850	+	0	NA	intron (NM_003954, intron 6 of 15)	intron (NM_003954, intron 6 of 15)	-22391	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
97823	chr17	44897021	44897300	+	0	NA	intron (NM_001258354, intron 1 of 27)	AluY|SINE|Alu	2208	NM_001258353	9343		NM_004247	ENSG00000108883	EFTUD2	MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD	elongation factor Tu GTP binding domain containing 2	protein-coding
159857	chr3	16545951	16546800	+	0	NA	Intergenic	Intergenic	10057	NR_103843	100996597		NR_103843	ENSG00000233570	LINC00690	-	long intergenic non-protein coding RNA 690	ncRNA
54042	chr12	75790301	75790500	+	0	NA	Intergenic	Intergenic	241376	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
72419	chr15	31443501	31444100	+	0	NA	Intergenic	Intergenic	116965	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
25713	chr10	8997471	8997630	+	0	NA	Intergenic	Intergenic	99561	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
64621	chr14	30981521	30981780	+	0	NA	intron (NM_014574, intron 1 of 15)	intron (NM_014574, intron 1 of 15)	33092	NR_030354	693209		NR_030354	ENSG00000207952	MIR624	MIRN624|hsa-mir-624|mir-624	microRNA 624	ncRNA
168819	chr3	152230701	152231100	+	0	NA	Intergenic	L1PA7|LINE|L1	-12732	NM_001376839	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
126795	chr2	30334071	30334230	+	0	NA	Intergenic	Intergenic	-12496	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
195794	chr6	41027821	41028980	+	0	NA	exon (NM_173561, exon 9 of 9)	exon (NM_173561, exon 9 of 9)	-5120	NR_110873	101929555		NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
38627	chr11	46346801	46348400	+	0	NA	5' UTR (NM_003646, exon 1 of 31)	5' UTR (NM_003646, exon 1 of 31)	137	NM_001199268	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
58265	chr12	128820771	128821400	+	0	NA	intron (NM_145648, intron 1 of 7)	MSTB1|LTR|ERVL-MaLR	2873	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
85142	chr16	46383101	46383980	+	0	NA	Intergenic	Intergenic	185557	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
32229	chr10	101826271	101826650	+	0	NA	3' UTR (NM_014591, exon 10 of 10)	3' UTR (NM_014591, exon 10 of 10)	7392	NR_045118	100289509		NR_045118		KCNIP2-AS1	-	KCNIP2 antisense RNA 1	ncRNA
90725	chr17	1976151	1976830	+	0	NA	intron (NM_178568, intron 1 of 1)	intron (NM_178568, intron 1 of 1)	-41226	NR_135642	105371485		NR_135642	ENSG00000228133	LOC105371485	-	uncharacterized LOC105371485	ncRNA
178442	chr4	147933471	147933780	+	0	NA	intron (NM_024605, intron 13 of 22)	L1M3a|LINE|L1	151030	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
119972	chr19	41898101	41898750	+	0	NA	intron (NM_004706, intron 13 of 28)	intron (NM_004706, intron 13 of 28)	13982	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
40666	chr11	64751351	64751450	+	0	NA	exon (NM_005609, exon 16 of 20)	exon (NM_005609, exon 16 of 20)	-5944	NM_153819	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
213063	chr7	131071921	131072250	+	0	NA	intron (NR_109852, intron 2 of 5)	MER41B|LTR|ERV1	34945	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
182775	chr5	68378151	68378650	+	0	NA	Intergenic	Intergenic	85823	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
224539	chr9	19234321	19234580	+	0	NA	intron (NM_001330640, intron 1 of 32)	AluSc8|SINE|Alu	3757	NR_073201	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
88386	chr16	84612551	84612850	+	0	NA	intron (NM_021149, intron 2 of 3)	AluSx|SINE|Alu	5378	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
67351	chr14	69683671	69684450	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	72464	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
229708	chr9	124778721	124778980	+	0	NA	intron (NM_182487, intron 1 of 7)	intron (NM_182487, intron 1 of 7)	1717	NM_182487	169611		NM_182487	ENSG00000185585	OLFML2A	PRO34319	olfactomedin like 2A	protein-coding
232648	chr9	136476801	136477280	+	0	NA	exon (NM_001276418, exon 2 of 29)	exon (NM_001276418, exon 2 of 29)	-5970	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
161889	chr3	45948451	45948550	+	0	NA	TTS (NM_006564)	TTS (NM_006564)	5036	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
34496	chr10	132548601	132548800	+	0	NA	intron (NM_005539, intron 1 of 15)	L1ME1|LINE|L1	10913	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
131931	chr2	99066351	99067300	+	0	NA	intron (NM_025244, intron 15 of 20)	intron (NM_025244, intron 15 of 20)	74355	NR_146001	80705		NM_025244	ENSG00000135951	TSGA10	CEP4L|CT79|SPGF26	testis specific 10	protein-coding
58290	chr12	130760321	130760880	+	0	NA	Intergenic	Intergenic	-44295	NM_001351233	23504		NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
118248	chr19	35236571	35237150	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-8135	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
150579	chr21	43172651	43172830	+	0	NA	TTS (NM_001363766).2	TTS (NM_001363766).2	2504	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
27996	chr10	43129101	43129670	+	0	NA	3' UTR (NM_020975, exon 20 of 20)	3' UTR (NM_020975, exon 20 of 20)	-9060	NR_135077	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
35954	chr11	2698051	2698630	+	0	NA	non-coding (NR_002728, exon 1 of 1)	non-coding (NR_002728, exon 1 of 1)	1658	NR_002728	10984		NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1	ncRNA
227861	chr9	93592621	93592930	+	0	NA	intron (NM_005392, intron 1 of 21)	MIRb|SINE|MIR	-2066	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
97781	chr17	44657151	44657550	+	0	NA	intron (NM_001145080, intron 2 of 7)	intron (NM_001145080, intron 2 of 7)	882	NM_001145080	284071		NM_001033659	ENSG00000180336	MEIOC	C17orf104	meiosis specific with coiled-coil domain	protein-coding
50942	chr12	49368901	49369100	+	0	NA	intron (NM_001293286, intron 1 of 12)	intron (NM_001293286, intron 1 of 12)	1538	NM_001293286	65244		NM_023071	ENSG00000123352	SPATS2	Nbla00526|P59SCR|SCR59|SPATA10	spermatogenesis associated serine rich 2	protein-coding
194933	chr6	35169351	35169850	+	0	NA	Intergenic	(CAC)n|Simple_repeat|Simple_repeat	-28190	NM_001261818	6954		NM_018679	ENSG00000124678	TCP11	D6S230E|FPPR	t-complex 11	protein-coding
200231	chr6	131615351	131615450	+	0	NA	intron (NM_001376518, intron 10 of 29)	A-rich|Low_complexity|Low_complexity	12842	NM_001270521	9439		NM_004830	ENSG00000112282	MED23	ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2	mediator complex subunit 23	protein-coding
20525	chr1	198683871	198684330	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	45060	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
182466	chr5	62334221	62334780	+	0	NA	intron (NM_001243952, intron 2 of 20)	(CTC)n|Simple_repeat|Simple_repeat	28294	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
31933	chr10	100565121	100565730	+	0	NA	Intergenic	Intergenic	29482	NM_017902	55662		NM_017902	ENSG00000166135	HIF1AN	FIH1	hypoxia inducible factor 1 subunit alpha inhibitor	protein-coding
92275	chr17	8065101	8065300	+	0	NA	Intergenic	Intergenic	22516	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
30779	chr10	84344621	84345050	+	0	NA	intron (NM_001284241, intron 1 of 2)	MIRb|SINE|MIR	16246	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
167148	chr3	128051751	128053350	+	0	NA	5' UTR (NM_013336, exon 1 of 12)	5' UTR (NM_013336, exon 1 of 12)	113	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
95513	chr17	36533221	36533480	+	0	NA	intron (NM_025109, intron 2 of 21)	intron (NM_025109, intron 2 of 21)	-1412	NM_001346755	284098		NM_178517	ENSG00000277161	PIGW	Gwt1|HPMRS5	phosphatidylinositol glycan anchor biosynthesis class W	protein-coding
214085	chr7	143563301	143563630	+	0	NA	intron (NM_001363538, intron 8 of 11)	intron (NM_001363538, intron 8 of 11)	-8336	NM_001008747	441294		NM_001008747	ENSG00000271079	CTAGE15	CTAGE15P|cTAGE-15	CTAGE family member 15	protein-coding
32905	chr10	110171951	110172330	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-20160	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
215483	chr7	158341051	158341580	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	191498	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
212814	chr7	130416001	130416200	+	0	NA	intron (NM_001257159, intron 2 of 8)	intron (NM_001257159, intron 2 of 8)	24916	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
218408	chr8	47369201	47369620	+	0	NA	intron (NR_104581, intron 5 of 16)	intron (NR_104581, intron 5 of 16)	108472	NM_001080394	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
211605	chr7	105874801	105875000	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	1685	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
137733	chr2	197807271	197807980	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	3032	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
166758	chr3	122233001	122233200	+	0	NA	intron (NM_001178065, intron 1 of 6)	MER90|LTR|ERV1	48773	NM_001178065	846		NM_000388	ENSG00000036828	CASR	CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR	calcium sensing receptor	protein-coding
39887	chr11	62497101	62497880	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	48174	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
49819	chr12	32015101	32015300	+	0	NA	Intergenic	L1MB8|LINE|L1	55785	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
175070	chr4	54060071	54060680	+	0	NA	intron (NM_012110, intron 1 of 5)	intron (NM_012110, intron 1 of 5)	4230	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
38730	chr11	46826171	46827200	+	0	NA	intron (NM_014756, intron 1 of 42)	intron (NM_014756, intron 1 of 42)	19595	NM_001008938	9793		NM_014756	ENSG00000175216	CKAP5	CHTOG|MSPS|TOG|TOGp|ch-TOG	cytoskeleton associated protein 5	protein-coding
93994	chr17	22322351	22322450	+	0	NA	Intergenic	Intergenic	23636	NR_028336	284123		NM_203392	ENSG00000178130	FAM27E5	FAM27L	family with sequence similarity E5	ncRNA
142568	chr20	5297351	5297750	+	0	NA	Intergenic	LTR64|LTR|ERV1	19404	NM_144773	128674		NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
8162	chr1	39494271	39494430	+	0	NA	intron (NM_181809, intron 1 of 6)	AluJr4|SINE|Alu	2714	NM_181809	353500		NM_181809	ENSG00000183682	BMP8A	OP-2|Op2	bone morphogenetic protein 8a	protein-coding
27581	chr10	32375221	32375480	+	0	NA	TTS (NR_104163)	TTS (NR_104163)	3419	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
56212	chr12	111588701	111588900	+	0	NA	intron (NM_001310121, intron 1 of 25)	AluYj4|SINE|Alu	10515	NM_001372574	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
135290	chr2	160197571	160197730	+	0	NA	intron (NM_001282390, intron 1 of 13)	intron (NM_001282390, intron 1 of 13)	2622	NM_001282390	3694		NM_000888	ENSG00000115221	ITGB6	AI1H	integrin subunit beta 6	protein-coding
211955	chr7	112487551	112488080	+	0	NA	intron (NM_001134468, intron 3 of 3)	intron (NM_001134468, intron 3 of 3)	6824	NM_182597	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
149307	chr21	28992301	28994000	+	0	NA	promoter-TSS (NM_015565)	promoter-TSS (NM_015565)	-273	NM_001320766	26046		NM_015565	ENSG00000198862	LTN1	C21orf10|C21orf98|RNF160|ZNF294	listerin E3 ubiquitin protein ligase 1	protein-coding
138422	chr2	205676001	205676200	+	0	NA	Intergenic	Intergenic	-6400	NM_201264	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
137634	chr2	197378351	197378830	+	0	NA	Intergenic	Intergenic	56438	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
88718	chr16	85962071	85962230	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	43803	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
104809	chr17	81802971	81803130	+	0	NA	Intergenic	L2|LINE|L2	-1100	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
234807	chrX	24046151	24046650	+	0	NA	Intergenic	Intergenic	-8556	NM_001415	1968		NM_001415	ENSG00000130741	EIF2S3	EIF2|EIF2G|EIF2gamma|MEHMO|MRXSBRK|eIF-2gA|eIF2gX	eukaryotic translation initiation factor 2 subunit gamma	protein-coding
80345	chr16	2476451	2476550	+	0	NA	intron (NM_001199107, intron 1 of 7)	intron (NM_001199107, intron 1 of 7)	1373	NM_020705	57465		NM_020705	ENSG00000162065	TBC1D24	DEE16|DFNA65|DFNB86|DOORS|EIEE16|EIM|EPRPDC|FIME|TLDC6	TBC1 domain family member 24	protein-coding
979	chr1	1822971	1823330	+	0	NA	intron (NM_001282539, intron 2 of 10)	AluY|SINE|Alu	-43119	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
180797	chr5	32281771	32282380	+	0	NA	intron (NM_001294344, intron 1 of 13)	intron (NM_001294344, intron 1 of 13)	30864	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
51489	chr12	52092871	52093600	+	0	NA	promoter-TSS (NR_120440)	promoter-TSS (NR_120440)	-334	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
55481	chr12	104720331	104721600	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	129332	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
223181	chr8	143560351	143560450	+	0	NA	intron (NM_001166237, intron 6 of 13).2	intron (NM_001166237, intron 6 of 13).2	2054	NM_024736	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
225821	chr9	37784321	37785630	+	0	NA	promoter-TSS (NM_016042)	promoter-TSS (NM_016042)	89	NM_016042	51010		NM_016042	ENSG00000107371	EXOSC3	CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10	exosome component 3	protein-coding
193204	chr6	29753001	29753700	+	0	NA	Intergenic	Intergenic	-2202	NR_001590	340198		NR_001590	ENSG00000235821	IFITM4P	dJ377H14.5	interferon induced transmembrane protein 4 pseudogene	pseudo
75270	chr15	65031071	65031650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1721	NM_139242	123263		NM_139242	ENSG00000103707	MTFMT	COXPD15|FMT1|MC1DN27	mitochondrial methionyl-tRNA formyltransferase	protein-coding
211861	chr7	111012851	111013900	+	0	NA	intron (NM_032549, intron 3 of 5)	L2b|LINE|L2	-77631	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
94140	chr17	28321571	28321730	+	0	NA	intron (NM_014573, intron 1 of 2)	AluJo|SINE|Alu	2450	NM_014573	27346		NM_014573	ENSG00000109084	TMEM97	MAC30|S2R|sigma2R	transmembrane protein 97	protein-coding
118139	chr19	34992671	34992830	+	0	NA	Intergenic	L1ME3B|LINE|L1	-1977	NM_001320036	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
209434	chr7	76388901	76389330	+	0	NA	TTS (NM_080744)	TTS (NM_080744)	-8407	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
100307	chr17	59809121	59809380	+	0	NA	intron (NM_030938, intron 8 of 11)	AluSz|SINE|Alu	-32016	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
230309	chr9	127958571	127958800	+	0	NA	intron (NM_001035254, intron 1 of 10)	AluJr4|SINE|Alu	-7971	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
73683	chr15	44813221	44813500	+	0	NA	Intergenic	Intergenic	69259	NR_146393	653381		NR_146393	ENSG00000290387	SORD2P	SORD2	sorbitol dehydrogenase 2, pseudogene	pseudo
46606	chr11	128552751	128553280	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	26873	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
26789	chr10	23325171	23325330	+	0	NA	intron (NM_001371909, intron 2 of 15)	AluJr|SINE|Alu	-18707	NR_155752	105376453		NR_155752	ENSG00000224215	C10orf67-AS1	-	C10orf67 antisense RNA 1	ncRNA
162228	chr3	47083901	47084100	+	0	NA	exon (NM_014159, exon 12 of 21)	exon (NM_014159, exon 12 of 21)	72458	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
171302	chr3	195956271	195956530	+	0	NA	Intergenic	Intergenic	33879	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
163381	chr3	50491821	50492080	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	11684	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
78250	chr15	90807321	90807580	+	0	NA	intron (NM_001287248, intron 19 of 21)	AluJo|SINE|Alu	-61138	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
64329	chr14	23831671	23831930	+	0	NA	Intergenic	LTR33|LTR|ERVL	-121970	NM_001282987	10901		NM_021004	ENSG00000157326	DHRS4	CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2	dehydrogenase/reductase 4	protein-coding
45835	chr11	119373401	119373740	+	0	NA	intron (NM_004205, intron 1 of 12)	intron (NM_004205, intron 1 of 12)	8120	NM_004205	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
21424	chr1	205321071	205322130	+	0	NA	exon (NM_030952, exon 1 of 7)	exon (NM_030952, exon 1 of 7)	145	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
123715	chr19	55042801	55043000	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-4636	NM_001256017	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
92622	chr17	10103771	10103950	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-67203	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
137116	chr2	191003371	191003850	+	0	NA	intron (NM_139266, intron 5 of 22)	MSTA|LTR|ERVL-MaLR	10561	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
204167	chr7	2416151	2416450	+	0	NA	intron (NM_018641, intron 1 of 1)	Tigger1|DNA|TcMar-Tigger	12689	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
129025	chr2	64917451	64918730	+	0	NA	intron (NR_036586, intron 1 of 2)	intron (NR_036586, intron 1 of 2)	14357	NR_036586	400958		NR_036586		LINC02245	-	long intergenic non-protein coding RNA 2245	ncRNA
134169	chr2	134252071	134252630	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-1722	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
237610	chrX	123977721	123978180	+	0	NA	intron (NM_001282418, intron 2 of 33)	AluJb|SINE|Alu	16244	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
119294	chr19	39823821	39825080	+	0	NA	TTS (NM_006483).2	TTS (NM_006483).2	5352	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
159214	chr3	12897301	12897930	+	0	NA	3' UTR (NM_001134382, exon 14 of 14)	3' UTR (NM_001134382, exon 14 of 14)	-12404	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
67659	chr14	73104651	73105080	+	0	NA	intron (NM_021239, intron 10 of 18)	intron (NM_021239, intron 10 of 18)	-31642	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
56724	chr12	120114851	120115550	+	0	NA	intron (NM_006861, intron 1 of 5)	intron (NM_006861, intron 1 of 5)	1553	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
47748	chr12	6530571	6531250	+	0	NA	intron (NM_014865, intron 30 of 31)	intron (NM_014865, intron 30 of 31)	-3607	NR_152150	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
109410	chr19	682321	682900	+	0	NA	3' UTR (NM_005860, exon 5 of 5)	3' UTR (NM_005860, exon 5 of 5)	6218	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
230003	chr9	126914271	126915930	+	0	NA	promoter-TSS (NM_001366400)	promoter-TSS (NM_001366400)	318	NM_001190730	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
12362	chr1	101241501	101242630	+	0	NA	TTS (NM_001400)	TTS (NM_001400)	5046	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
145539	chr20	44187351	44187450	+	0	NA	promoter-TSS (NM_020433)	promoter-TSS (NM_020433)	-212	NM_175913	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
234586	chrX	19774371	19774600	+	0	NA	intron (NM_001353892, intron 2 of 17)	AluY|SINE|Alu	25288	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
136888	chr2	189304351	189304650	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-124739	NM_000393	1290		NM_000393	ENSG00000204262	COL5A2	EDSC|EDSCL2	collagen type V alpha 2 chain	protein-coding
110517	chr19	2069551	2070650	+	0	NA	TTS (NM_130807)	TTS (NM_130807)	-18856	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
128153	chr2	48440171	48441400	+	0	NA	promoter-TSS (NR_024188)	promoter-TSS (NR_024188)	16	NM_001193475	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
150597	chr21	43354521	43354780	+	0	NA	Intergenic	LTR33A|LTR|ERVL	7699	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
13698	chr1	116756771	116756930	+	0	NA	intron (NM_001328609, intron 2 of 4)	intron (NM_001328609, intron 2 of 4)	2420	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
232305	chr9	134501371	134501530	+	0	NA	Intergenic	CpG	94890	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
79202	chr16	342871	343680	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	9448	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
96247	chr17	39823621	39824080	+	0	NA	intron (NM_001257408, intron 2 of 6)	THE1D-int|LTR|ERVL-MaLR	40338	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
219097	chr8	65879401	65879800	+	0	NA	Intergenic	Intergenic	-37536	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
182498	chr5	64690571	64690930	+	0	NA	exon (NM_001164442, exon 1 of 3)	exon (NM_001164442, exon 1 of 3)	247	NM_001164442	100132916		NM_001164442	ENSG00000145642	SHISAL2B	FAM159B	shisa like 2B	protein-coding
112830	chr19	7527101	7527300	+	0	NA	intron (NM_020533, intron 4 of 13)	AluJr|SINE|Alu	4576	NM_020533	57192		NM_020533	ENSG00000090674	MCOLN1	LECD|MG-2|ML1|ML4|MLIV|MST080|MSTP080|TRP-ML1|TRPM-L1|TRPML1	mucolipin TRP cation channel 1	protein-coding
72884	chr15	40312271	40312630	+	0	NA	Intergenic	Intergenic	-4515	NM_001284297	5330		NM_004573	ENSG00000137841	PLCB2	PLC-beta-2	phospholipase C beta 2	protein-coding
168602	chr3	149245721	149246000	+	0	NA	Intergenic	Intergenic	-24031	NM_000096	1356		NM_000096	ENSG00000047457	CP	AB073614|CP-2	ceruloplasmin	protein-coding
53900	chr12	71415701	71415980	+	0	NA	Intergenic	Intergenic	-23958	NR_110596	8549		NM_003667	ENSG00000139292	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine rich repeat containing G protein-coupled receptor 5	protein-coding
161253	chr3	39250651	39250950	+	0	NA	Intergenic	Intergenic	29236	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
126478	chr2	28381801	28382000	+	0	NA	Intergenic	MIR3|SINE|MIR	-10958	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
227348	chr9	89469701	89469950	+	0	NA	intron (NM_001371194, intron 1 of 15)	L1ME1|LINE|L1	10065	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
33528	chr10	119231621	119231880	+	0	NA	intron (NM_005308, intron 1 of 15)	L1MA5A|LINE|L1	24179	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
185950	chr5	132966871	132967630	+	0	NA	Intergenic	AluSx|SINE|Alu	-3616	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
150411	chr21	42389071	42389300	+	0	NA	promoter-TSS (NM_032404)	promoter-TSS (NM_032404)	-36	NM_032404	64699		NM_024022	ENSG00000160183	TMPRSS3	DFNB10|DFNB8|ECHOS1|TADG12	transmembrane serine protease 3	protein-coding
202016	chr6	152642971	152643330	+	0	NA	Intergenic	Intergenic	-5788	NM_182961	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
22626	chr1	223670571	223670730	+	0	NA	Intergenic	Intergenic	-4949	NM_001143962	388743		NM_001143962	ENSG00000203697	CAPN8	nCL-2	calpain 8	protein-coding
110491	chr19	2038451	2038580	+	0	NA	3' UTR (NM_199054, exon 14 of 14)	3' UTR (NM_199054, exon 14 of 14)	12729	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
206925	chr7	38223451	38223700	+	0	NA	intron (NM_032016, intron 7 of 8)	MER94|DNA|hAT-Blackjack	45330	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
140410	chr2	233099301	233099500	+	0	NA	intron (NM_001017915, intron 2 of 26).2	L3|LINE|CR1	39058	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
142596	chr20	5576171	5576330	+	0	NA	intron (NM_019593, intron 8 of 19)	AluSx3|SINE|Alu	34756	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
173611	chr4	11066371	11066730	+	0	NA	Intergenic	L1PA2|LINE|L1	-302277	NR_030298	693157		NR_030298	ENSG00000207716	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
107780	chr18	51050971	51051650	+	0	NA	intron (NM_005359, intron 4 of 11)	intron (NM_005359, intron 4 of 11)	21097	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
110760	chr19	2377121	2377730	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-7840	NM_182973	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
74594	chr15	60567621	60568600	+	0	NA	intron (NM_134260, intron 1 of 11)	MER20|DNA|hAT-Charlie	24416	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
47971	chr12	6877721	6878280	+	0	NA	intron (NR_135083, intron 2 of 3)	AluSx|SINE|Alu	-4697	NM_032641	84727		NM_032641	ENSG00000111671	SPSB2	GRCC9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding
29109	chr10	68337801	68338030	+	0	NA	exon (NM_012207, exon 3 of 10)	exon (NM_012207, exon 3 of 10)	-4987	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
168952	chr3	152375401	152375880	+	0	NA	intron (NM_001376837, intron 2 of 9)	AluJb|SINE|Alu	-34650	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
164012	chr3	53186351	53186650	+	0	NA	intron (NM_212539, intron 12 of 17)	intron (NM_212539, intron 12 of 17)	17797	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
47302	chr12	1668851	1669400	+	0	NA	Intergenic	Intergenic	-8745	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
7360	chr1	32798751	32799750	+	0	NA	intron (NM_003680, intron 4 of 12)	L2c|LINE|L2	-18192	NM_001256121	64766		NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding
9574	chr1	51872451	51872550	+	0	NA	intron (NM_002525, intron 1 of 32)	AluJb|SINE|Alu	5540	NM_001242361	4898		NM_002525	ENSG00000078618	NRDC	NRD1|hNRD1|hNRD2	nardilysin convertase	protein-coding
185600	chr5	131412471	131412800	+	0	NA	Intergenic	L1MA9|LINE|L1	148582	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
118267	chr19	35265171	35265600	+	0	NA	intron (NM_205834, intron 5 of 9)	intron (NM_205834, intron 5 of 9)	-3577	NM_001321150	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
150742	chr21	43763971	43764130	+	0	NA	Intergenic	LTR47A|LTR|ERVL	12258	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
190654	chr5	181240071	181240550	+	0	NA	intron (NM_006098, intron 3 of 7)	AluY|SINE|Alu	1579	NR_002592	619571		NR_002592	ENSG00000272296	SNORD96A	U96A	small nucleolar RNA, C/D box 96A	snoRNA
35230	chr11	832301	833950	+	0	NA	intron (NM_139030, intron 1 of 7)	CpG-3790	173	NM_139029	977		NM_004357	ENSG00000177697	CD151	EBS7|GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24	CD151 molecule (Raph blood group)	protein-coding
193810	chr6	31460771	31460930	+	0	NA	Intergenic	MER21-int|LTR|ERVL	-2330	NR_040662	10866		NR_040662	ENSG00000206337	HCP5	6S2650E|D6S2650E|P5-1	HLA complex P5	ncRNA
43122	chr11	75245671	75245830	+	0	NA	Intergenic	L2b|LINE|L2	4976	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
232667	chr9	136506501	136507030	+	0	NA	exon (NM_017617, exon 23 of 34)	exon (NM_017617, exon 23 of 34)	12861	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
10814	chr1	77862051	77862230	+	0	NA	intron (NM_001363586, intron 12 of 15)	AluSz6|SINE|Alu	-26375	NM_001172309	91624		NM_144573	ENSG00000162614	NEXN	CMH20|NELIN	nexilin F-actin binding protein	protein-coding
102669	chr17	76088051	76088480	+	0	NA	intron (NM_001145297, intron 11 of 19)	intron (NM_001145297, intron 11 of 19)	9083	NM_180990	353174		NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding
29307	chr10	69325871	69326350	+	0	NA	intron (NM_000188, intron 1 of 17)	AluSx3|SINE|Alu	7263	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
65467	chr14	51843351	51844000	+	0	NA	Intergenic	Intergenic	-16937	NM_001243773	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
50440	chr12	47705321	47707430	+	0	NA	promoter-TSS (NM_024604)	promoter-TSS (NM_024604)	-314	NM_001146075	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
14937	chr1	147599041	147600650	+	0	NA	intron (NM_004326, intron 1 of 9)	CpG	58344	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
201700	chr6	149699351	149699450	+	0	NA	intron (NM_001350339, intron 2 of 9)	intron (NM_001350339, intron 2 of 9)	17025	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
76346	chr15	74433201	74434900	+	0	NA	promoter-TSS (NM_003612)	promoter-TSS (NM_003612)	-92	NM_001146029	8482		NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|PFIC11|SEMAK1|SEMAL	semaphorin 7A (JohnMiltonHagen blood group)	protein-coding
190904	chr6	2783121	2783650	+	0	NA	intron (NM_020135, intron 4 of 6)	intron (NM_020135, intron 4 of 6)	-13009	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
114499	chr19	12774551	12776280	+	0	NA	exon (NM_001100176, exon 1 of 22)	exon (NM_001100176, exon 1 of 22)	137	NM_001100176	29911		NM_013312	ENSG00000095066	HOOK2	HK2	hook microtubule tethering protein 2	protein-coding
154419	chr22	35337371	35337530	+	0	NA	promoter-TSS (NR_106717)	promoter-TSS (NR_106717)	-651	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
22448	chr1	220874351	220874450	+	0	NA	intron (NR_046901, intron 1 of 2)	intron (NR_046901, intron 1 of 2)	-5043	NM_021958	3142		NM_021958	ENSG00000136630	HLX	HB24|HLX1	H2.0 like homeobox	protein-coding
212081	chr7	115183351	115184050	+	0	NA	intron (NR_126407, intron 1 of 4)	Tigger1|DNA|TcMar-Tigger	47655	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
224728	chr9	21591701	21591900	+	0	NA	Intergenic	Intergenic	-32002	NR_152878	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
102580	chr17	75877501	75878300	+	0	NA	exon (NM_033452, exon 1 of 6)	exon (NM_033452, exon 1 of 6)	681	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
186803	chr5	139378251	139379280	+	0	NA	intron (NM_152685, intron 9 of 14)	intron (NM_152685, intron 9 of 14)	4532	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
147796	chr20	62642001	62643800	+	0	NA	intron (NM_016354, intron 1 of 11)	CpG	397	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
7415	chr1	32954821	32955080	+	0	NA	intron (NM_001127361, intron 1 of 8)	L2c|LINE|L2	9859	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
157466	chr22	45283651	45283950	+	0	NA	Intergenic	L1MC5|LINE|L1	-1149	NM_006953	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
70568	chr14	102595571	102597100	+	0	NA	intron (NM_015156, intron 2 of 11)	AluSp|SINE|Alu	3686	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
83956	chr16	29147471	29147730	+	0	NA	Intergenic	LTR16|LTR|ERVL	72758	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
203931	chr7	1536571	1537330	+	0	NA	intron (NM_002360, intron 1 of 2)	intron (NM_002360, intron 1 of 2)	-2070	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
156101	chr22	40076721	40078030	+	0	NA	intron (NM_001024843, intron 1 of 23)	L1MEc|LINE|L1	32558	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
97465	chr17	43721901	43722100	+	0	NA	Intergenic	L2c|LINE|L2	36791	NM_025237	50964		NM_025237	ENSG00000167941	SOST	CDD|DAND6|SOST1|VBCH	sclerostin	protein-coding
14455	chr1	144414511	144415030	+	0	NA	Intergenic	Intergenic	2194	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
6133	chr1	27362501	27363200	+	0	NA	intron (NM_004672, intron 7 of 28)	intron (NM_004672, intron 7 of 28)	4111	NM_001297609	9064		NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
190753	chr6	434901	435100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	43248	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
38828	chr11	47310051	47310550	+	0	NA	intron (NM_001376633, intron 27 of 32)	AluSx1|SINE|Alu	-38190	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
163887	chr3	52513921	52514430	+	0	NA	exon (NM_015136, exon 33 of 69)	exon (NM_015136, exon 33 of 69)	18837	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
138950	chr2	218253621	218253880	+	0	NA	intron (NM_152862, intron 10 of 10)	intron (NM_152862, intron 10 of 10)	-5746	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
134010	chr2	131010121	131010930	+	0	NA	intron (NM_001375902, intron 2 of 10)	intron (NM_001375902, intron 2 of 10)	46870	NM_001375904	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
23487	chr1	228636701	228638300	+	0	NA	Intergenic	CpG	-6992	NR_023366	100169755		NR_023366	ENSG00000200381	RNA5S4	RN5S4	RNA, 5S ribosomal 4	rRNA
234978	chrX	39450621	39450900	+	0	NA	Intergenic	Intergenic	-58986	NR_110385	101927449		NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
78770	chr15	99249251	99249830	+	0	NA	promoter-TSS (NM_001288615)	promoter-TSS (NM_001288615)	41	NR_109947	64927		NM_022905	ENSG00000103852	TTC23	HCC-8	tetratricopeptide repeat domain 23	protein-coding
120056	chr19	42065721	42066580	+	0	NA	promoter-TSS (NM_002088)	promoter-TSS (NM_002088)	-335	NM_001301030	2901		NM_002088	ENSG00000105737	GRIK5	EAA2|GRIK2|GluK5|KA2	glutamate ionotropic receptor kainate type subunit 5	protein-coding
212200	chr7	117873221	117873680	+	0	NA	promoter-TSS (NM_001363351)	promoter-TSS (NM_001363351)	-9	NM_033427	83992		NM_033427	ENSG00000077063	CTTNBP2	C7orf8|CORTBP2|Orf4	cortactin binding protein 2	protein-coding
10037	chr1	58361271	58361430	+	0	NA	intron (NM_001379461, intron 3 of 20)	intron (NM_001379461, intron 3 of 20)	-110847	NM_001353980	1600		NM_021080	ENSG00000173406	DAB1	SCA37	DAB adaptor protein 1	protein-coding
165127	chr3	71719671	71720080	+	0	NA	intron (NM_173359, intron 2 of 7)	AluJo|SINE|Alu	5527	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
218064	chr8	38913051	38913500	+	0	NA	intron (NM_021623, intron 1 of 11)	AluSx|SINE|Alu	11929	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
208898	chr7	73852621	73852880	+	0	NA	Intergenic	Intergenic	-8409	NM_182504	135886		NM_182504	ENSG00000175877	TMEM270	WBSCR28	transmembrane protein 270	protein-coding
17673	chr1	157700451	157701200	+	0	NA	promoter-TSS (NR_135216)	promoter-TSS (NR_135216)	-56	NM_052939	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
49443	chr12	24839151	24839880	+	0	NA	intron (NM_001178091, intron 6 of 9)	intron (NM_001178091, intron 6 of 9)	62707	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
97490	chr17	43847071	43847230	+	0	NA	promoter-TSS (NM_001168324)	promoter-TSS (NM_001168324)	-26	NM_001168322	146894		NM_145273	ENSG00000161649	CD300LG	CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4	CD300 molecule like family member g	protein-coding
20899	chr1	202158471	202158630	+	0	NA	intron (NM_002832, intron 2 of 9)	AluJo|SINE|Alu	904	NM_001364878	5778		NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase non-receptor type 7	protein-coding
71973	chr15	25436771	25437200	+	0	NA	intron (NM_001354507, intron 1 of 14)	intron (NM_001354507, intron 1 of 14)	1244	NM_001354526	7337		NM_000462	ENSG00000114062	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A|PIX1	ubiquitin protein ligase E3A	protein-coding
70739	chr14	103381851	103382150	+	0	NA	Intergenic	AluJr|SINE|Alu	-3364	NM_001128919	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
85218	chr16	47492721	47493180	+	0	NA	intron (NM_001031835, intron 2 of 31)	MER61A|LTR|ERV1	31619	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
69836	chr14	99234801	99236100	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	36747	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
64127	chr14	22852921	22854000	+	0	NA	Intergenic	Intergenic	16875	NM_004995	4323		NM_004995	ENSG00000157227	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14	protein-coding
146100	chr20	47678751	47679050	+	0	NA	intron (NM_198596, intron 7 of 20)	intron (NM_198596, intron 7 of 20)	107164	NM_018837	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
138600	chr2	208253751	208254600	+	0	NA	5' UTR (NM_001282387, exon 1 of 10)	5' UTR (NM_001282387, exon 1 of 10)	128	NM_001282387	3417		NM_005896	ENSG00000138413	IDH1	HEL-216|HEL-S-26|IDCD|IDH|IDP|IDPC|PICD	isocitrate dehydrogenase (NADP(+)) 1	protein-coding
130161	chr2	75563701	75564050	+	0	NA	intron (NM_032181, intron 1 of 3)	intron (NM_032181, intron 1 of 3)	-2546	NM_001369524	84141		NM_032181	ENSG00000115363	EVA1A	FAM176A|TMEM166	eva-1 homolog A, regulator of programmed cell death	protein-coding
225570	chr9	35945471	35945990	+	0	NA	Intergenic	Intergenic	12424	NM_019897	56656		NM_019897	ENSG00000278889	OR2S2	OR37A|OST715	olfactory receptor family 2 subfamily S member 2	protein-coding
110336	chr19	1871651	1872030	+	0	NA	Intergenic	Intergenic	-8261	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
238106	chrX	136623421	136623680	+	0	NA	Intergenic	Intergenic	-15993	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
38121	chr11	35241551	35241850	+	0	NA	Intergenic	Intergenic	78750	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
105638	chr18	903651	903850	+	0	NA	Intergenic	Intergenic	-1121	NM_001099733	116		NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
234034	chrX	3842451	3843200	+	0	NA	intron (NR_034031, intron 1 of 4)	CpG	1069	NR_034031	389906		NM_001045547	ENSG00000285756	LOC389906	-	zinc finger protein 839 pseudogene	pseudo
165292	chr3	79032851	79032950	+	0	NA	intron (NM_002941, intron 3 of 30)	intron (NM_002941, intron 3 of 30)	-13441	NM_001145845	6091		NM_002941	ENSG00000169855	ROBO1	CPHD8|DUTT1|NORS|NYS8|SAX3	roundabout guidance receptor 1	protein-coding
60999	chr13	47890351	47890650	+	0	NA	Intergenic	Intergenic	42122	NR_047492	100861549		NR_047492	ENSG00000260388	LINC00562	-	long intergenic non-protein coding RNA 562	ncRNA
29936	chr10	73377521	73378250	+	0	NA	intron (NM_001320879, intron 11 of 11)	AluJb|SINE|Alu	-19021	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
44705	chr11	111574301	111575130	+	0	NA	Intergenic	Intergenic	-27734	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
57404	chr12	121828771	121828930	+	0	NA	intron (NM_001353345, intron 16 of 16)	MIR|SINE|MIR	24841	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
191427	chr6	10425651	10426650	+	0	NA	Intergenic	CpG	-6090	NM_001042425	7020		NM_003220	ENSG00000137203	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha	protein-coding
234301	chrX	13697521	13698150	+	0	NA	intron (NM_001195328, intron 1 of 1)	intron (NM_001195328, intron 1 of 1)	8707	NM_004251	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
149665	chr21	33562851	33563150	+	0	NA	intron (NM_138927, intron 6 of 11)	intron (NM_138927, intron 6 of 11)	12338	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
178832	chr4	153576921	153577380	+	0	NA	intron (NM_015196, intron 7 of 34)	L2b|LINE|L2	-63018	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
208866	chr7	73726771	73726930	+	0	NA	Intergenic	MIRb|SINE|MIR	-7181	NM_001165903	6804		NM_004603	ENSG00000106089	STX1A	HPC-1|P35-1|STX1|SYN1A	syntaxin 1A	protein-coding
163506	chr3	51388451	51388780	+	0	NA	intron (NM_006010, intron 3 of 3)	intron (NM_006010, intron 3 of 3)	-2670	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
77642	chr15	85485851	85486350	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	105497	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
100801	chr17	64050901	64052600	+	0	NA	intron (NM_001433, intron 17 of 21)	L1MC4|LINE|L1	-31116	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
4334	chr1	20492601	20493050	+	0	NA	Intergenic	MIRb|SINE|MIR	-6615	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
225243	chr9	34228071	34228230	+	0	NA	intron (NM_001171202, intron 2 of 5)	AluY|SINE|Alu	49107	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
14306	chr1	143804971	143805330	+	0	NA	Intergenic	L1PA17|LINE|L1	11550	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
75750	chr15	68306251	68306900	+	0	NA	intron (NM_001004439, intron 28 of 29)	intron (NM_001004439, intron 28 of 29)	28830	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
225327	chr9	34619871	34621130	+	0	NA	promoter-TSS (NM_001281425)	promoter-TSS (NM_001281425)	-5	NM_001281427	11258		NM_007234	ENSG00000137100	DCTN3	DCTN-22|DCTN22	dynactin subunit 3	protein-coding
119788	chr19	41320801	41321000	+	0	NA	intron (NM_001346100, intron 4 of 4)	intron (NM_001346100, intron 4 of 4)	10423	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
211367	chr7	104997801	104998400	+	0	NA	Intergenic	Intergenic	-6935	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
188290	chr5	151143571	151144250	+	0	NA	intron (NM_001363114, intron 2 of 24)	L2b|LINE|L2	-2226	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
11942	chr1	93844201	93844880	+	0	NA	intron (NM_001261408, intron 2 of 13)	intron (NM_001261408, intron 2 of 13)	-2292	NR_030621	100126348		NR_030621	ENSG00000211575	MIR760	MIRN760|hsa-mir-760|mir-760	microRNA 760	ncRNA
66220	chr14	61321051	61322400	+	0	NA	5' UTR (NM_006255, exon 1 of 14)	5' UTR (NM_006255, exon 1 of 14)	282	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
132533	chr2	106159851	106161550	+	0	NA	promoter-TSS (NM_001377506)	promoter-TSS (NM_001377506)	-63	NM_001377509	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
177983	chr4	139173601	139174250	+	0	NA	intron (NM_001371324, intron 1 of 10)	AluJb|SINE|Alu	3293	NM_001371339	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
64099	chr14	22714851	22715450	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-51538	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
82807	chr16	21472501	21472700	+	0	NA	intron (NR_027155, intron 8 of 28)	intron (NR_027155, intron 8 of 28)	-28926	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
9824	chr1	53959471	53960000	+	0	NA	intron (NM_052940, intron 3 of 7)	intron (NM_052940, intron 3 of 7)	13385	NM_001256409	115353		NM_052940	ENSG00000116212	LRRC42	dJ167A19.4	leucine rich repeat containing 42	protein-coding
42079	chr11	67496121	67496680	+	0	NA	intron (NM_004910, intron 14 of 23)	intron (NM_004910, intron 14 of 23)	6155	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
62385	chr13	99263871	99264730	+	0	NA	intron (NR_026644, intron 4 of 8)	LTR33|LTR|ERVL	-5872	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
185422	chr5	131064801	131065330	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	100191	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
93068	chr17	17505371	17505730	+	0	NA	TTS (NM_001267551)	TTS (NM_001267551)	-9155	NM_001199989	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
159800	chr3	16329501	16330250	+	0	NA	intron (NM_015150, intron 7 of 9)	intron (NM_015150, intron 7 of 9)	64663	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
92755	chr17	14813751	14813850	+	0	NA	Intergenic	LTR41|LTR|ERVL	-201005	NR_135638	101928475		NR_135638	ENSG00000232058	LOC101928475	-	uncharacterized LOC101928475	ncRNA
30259	chr10	75120151	75120650	+	0	NA	intron (NM_144660, intron 1 of 4)	AluY|SINE|Alu	8744	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
99932	chr17	57124151	57124250	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	28711	NM_001370427	8165		NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding
117685	chr19	27793171	27794950	+	0	NA	promoter-TSS (NR_027301)	promoter-TSS (NR_027301)	-120	NR_027301	148189		NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	ncRNA
177212	chr4	108433621	108434600	+	0	NA	Intergenic	Intergenic	-123123	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
100665	chr17	63738751	63739050	+	0	NA	intron (NM_001165970, intron 1 of 10)	AluY|SINE|Alu	2899	NR_156741	92335		NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk	STE20 related adaptor alpha	protein-coding
180542	chr5	14628321	14628650	+	0	NA	Intergenic	Intergenic	23897	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
134237	chr2	134959651	134959950	+	0	NA	TTS (NM_001320748)	TTS (NM_001320748)	40978	NM_001320749	905		NM_001241	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
155315	chr22	38204851	38205480	+	0	NA	intron (NM_001161573, intron 1 of 2)	MIR3|SINE|MIR	2145	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
204239	chr7	2548271	2548630	+	0	NA	intron (NM_001350627, intron 2 of 12)	AluJr|SINE|Alu	7074	NR_146879	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
115395	chr19	15276071	15277000	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	3916	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
149801	chr21	34973951	34975050	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	64926	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
25504	chr10	7184971	7185530	+	0	NA	intron (NM_001029880, intron 16 of 20)	intron (NM_001029880, intron 16 of 20)	1534	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
147768	chr20	62508721	62509730	+	0	NA	Intergenic	Intergenic	-33230	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
157498	chr22	45326651	45327150	+	0	NA	intron (NM_001349915, intron 3 of 7)	AluJb|SINE|Alu	8457	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
117418	chr19	19632521	19633080	+	0	NA	intron (NM_001288998, intron 18 of 19)	L2a|LINE|L2	-4580	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
133757	chr2	127609101	127609500	+	0	NA	intron (NM_001080527, intron 22 of 46)	intron (NM_001080527, intron 22 of 46)	-36564	NM_001161415	2840		NM_005291	ENSG00000144230	GPR17	-	G protein-coupled receptor 17	protein-coding
203759	chr7	1174921	1175450	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	14400	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
168420	chr3	142442651	142442950	+	0	NA	intron (NM_019001, intron 1 of 41)	AluY|SINE|Alu	5237	NM_019001	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
107852	chr18	54713271	54713830	+	0	NA	Intergenic	Intergenic	-4307	NM_001375327	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
89985	chr16	89844201	89844600	+	0	NA	intron (NM_032451, intron 1 of 14)	AluSz|SINE|Alu	15925	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
84639	chr16	30713721	30714630	+	0	NA	intron (NM_006662, intron 16 of 33)	AluY|SINE|Alu	3638	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
11812	chr1	92834701	92834900	+	0	NA	exon (NM_000969, exon 4 of 8)	exon (NM_000969, exon 4 of 8)	-2489	NR_000006	6083		NR_000006	ENSG00000206680	SNORD21	RNU21|U21	small nucleolar RNA, C/D box 21	snoRNA
231364	chr9	130662351	130662450	+	0	NA	Intergenic	CpG	-2194	NM_021619	59335		NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding
36696	chr11	8698871	8699030	+	0	NA	exon (NM_001376505, exon 13 of 17)	exon (NM_001376505, exon 13 of 17)	13511	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
173955	chr4	25915621	25915880	+	0	NA	intron (NM_001145432, intron 1 of 2)	intron (NM_001145432, intron 1 of 2)	1558	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
82267	chr16	15146571	15147900	+	0	NA	Intergenic	Intergenic	7767	NR_037466	100500852		NR_037466	ENSG00000264115	MIR3180-4	mir-3180-4	microRNA 3180-4	ncRNA
108363	chr18	68468071	68468230	+	0	NA	Intergenic	Intergenic	246958	NM_001350517	54495		NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
71600	chr14	106592121	106592830	+	0	NA	Intergenic	Intergenic	110036	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
155586	chr22	38751021	38752850	+	0	NA	intron (NM_001199580, intron 3 of 18)	intron (NM_001199580, intron 3 of 18)	3531	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
88669	chr16	85663771	85663930	+	0	NA	intron (NM_001278184, intron 10 of 14)	intron (NM_001278184, intron 10 of 14)	25104	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
17900	chr1	160102501	160103630	+	0	NA	Intergenic	Intergenic	-4237	NM_001206665	93185		NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
113653	chr19	10364521	10364780	+	0	NA	exon (NM_003331, exon 9 of 25)	exon (NM_003331, exon 9 of 25)	15922	NM_001385207	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
220859	chr8	103394701	103394900	+	0	NA	Intergenic	AluSz|SINE|Alu	20307	NM_030780	81034		NM_030780	ENSG00000164933	SLC25A32	GLYB|MFT|MFTC|RREI	solute carrier family 25 member 32	protein-coding
114380	chr19	12544601	12545000	+	0	NA	intron (NM_144976, intron 1 of 3)	MER54A|LTR|ERVL	6682	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
150405	chr21	42320071	42320230	+	0	NA	Intergenic	Intergenic	-4741	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
56152	chr12	111365871	111366230	+	0	NA	intron (NM_001177996, intron 2 of 3)	intron (NM_001177996, intron 2 of 3)	3045	NM_001177996	144717		NM_144671	ENSG00000198324	PHETA1	FAM109A|IPIP27A|SES1	PH domain containing endocytic trafficking adaptor 1	protein-coding
173605	chr4	10671321	10672080	+	0	NA	intron (NM_052964, intron 1 of 18)	intron (NM_052964, intron 1 of 18)	13068	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
5190	chr1	24951421	24951780	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	13410	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
141168	chr2	239268451	239268780	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-36847	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
136465	chr2	177169751	177169930	+	0	NA	Intergenic	Intergenic	42571	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
121930	chr19	48451621	48451880	+	0	NA	intron (NM_031485, intron 6 of 6)	intron (NM_031485, intron 6 of 6)	-3824	NM_013348	3770		NM_013348	ENSG00000182324	KCNJ14	IRK4|KIR2.4	potassium inwardly rectifying channel subfamily J member 14	protein-coding
40389	chr11	64006201	64006730	+	0	NA	intron (NM_014067, intron 4 of 10)	intron (NM_014067, intron 4 of 10)	20612	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
60075	chr13	33744901	33745130	+	0	NA	Intergenic	MER39|LTR|ERV1	-68221	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
30317	chr10	75402221	75402730	+	0	NA	promoter-TSS (NR_110301)	promoter-TSS (NR_110301)	-422	NR_110301	100131213		NR_024421	ENSG00000237149	ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	ncRNA
224357	chr9	7122201	7122400	+	0	NA	intron (NR_148677, intron 18 of 21)	MSTA|LTR|ERVL-MaLR	364327	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
66421	chr14	61520521	61520980	+	0	NA	intron (NM_006255, intron 10 of 13)	L1ME3G|LINE|L1	49444	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
98374	chr17	46417221	46417480	+	0	NA	intron (NR_033799, intron 4 of 6)	intron (NR_033799, intron 4 of 6)	44537	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
237860	chrX	130173251	130173780	+	0	NA	intron (NM_004794, intron 1 of 1)	intron (NM_004794, intron 1 of 1)	1553	NM_004794	9363		NM_004794	ENSG00000134594	RAB33A	RabS10	RAB33A, member RAS oncogene family	protein-coding
90648	chr17	1669201	1671050	+	0	NA	intron (NM_006445, intron 24 of 42)	L2|LINE|L2	14742	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
99557	chr17	50395501	50395900	+	0	NA	intron (NM_018509, intron 1 of 6)	AluSp|SINE|Alu	1823	NM_018509	55379		NM_018509	ENSG00000108829	LRRC59	PRO1855|p34	leucine rich repeat containing 59	protein-coding
214037	chr7	143310101	143311380	+	0	NA	intron (NM_001363538, intron 8 of 11)	intron (NM_001363538, intron 8 of 11)	-5371	NR_046453	1180		NM_000083	ENSG00000188037	CLCN1	CLC1	chloride voltage-gated channel 1	protein-coding
113903	chr19	10689901	10690330	+	0	NA	3' UTR (NM_017620, exon 20 of 20)	3' UTR (NM_017620, exon 20 of 20)	-11324	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
83571	chr16	28136951	28137880	+	0	NA	intron (NM_001270940, intron 10 of 24)	LTR33A|LTR|ERVL	-73701	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
143092	chr20	23142421	23142880	+	0	NA	Intergenic	Intergenic	-10014	NR_034149	200261		NM_182535	ENSG00000233746	LINC00656	-	long intergenic non-protein coding RNA 656	ncRNA
169120	chr3	155844171	155844330	+	0	NA	intron (NM_001190992, intron 1 of 6)	MIRc|SINE|MIR	10156	NM_001363883	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
123701	chr19	55024171	55024600	+	0	NA	intron (NM_001256017, intron 4 of 6).2	intron (NM_001256017, intron 4 of 6).2	13879	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
113754	chr19	10505321	10505980	+	0	NA	Intergenic	Intergenic	-2294	NM_203500	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
98	chr1	419871	420230	+	0	NA	Intergenic	L1MC5a|LINE|L1	31628	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
42960	chr11	73716121	73716430	+	0	NA	exon (NM_001243719, exon 5 of 8)	exon (NM_001243719, exon 5 of 8)	43818	NM_001243719	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
43274	chr11	75748921	75749180	+	0	NA	Intergenic	L1PA2|LINE|L1	19597	NR_046090	283214		NR_046090	ENSG00000247867	DGAT2-DT	-	DGAT2 divergent transcript	ncRNA
173861	chr4	23305151	23305250	+	0	NA	Intergenic	L2c|LINE|L2	576092	NM_001330753	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
184452	chr5	100053821	100053900	+	0	NA	Intergenic	Intergenic	334394	NR_027503	100133050		NR_027503		GUSBP19	-	GUSB pseudogene 19	pseudo
114234	chr19	11487401	11487950	+	0	NA	exon (NM_138783, exon 4 of 9)	exon (NM_138783, exon 4 of 9)	-6629	NM_001420	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
190248	chr5	178626131	178627630	+	0	NA	intron (NM_020666, intron 1 of 12)	CpG	170	NM_020666	57396		NM_020666	ENSG00000113240	CLK4	-	CDC like kinase 4	protein-coding
229577	chr9	123338871	123339780	+	0	NA	Intergenic	Intergenic	-16872	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
143149	chr20	23984451	23985180	+	0	NA	TTS (NM_178312)	TTS (NM_178312)	2060	NM_178312	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
16526	chr1	154940021	154941350	+	0	NA	intron (NM_001323012, intron 1 of 4)	intron (NM_001323012, intron 1 of 4)	1973	NM_001323012	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
76004	chr15	70891801	70892000	+	0	NA	promoter-TSS (NM_017691)	promoter-TSS (NM_017691)	533	NM_020147	56906		NM_020147	ENSG00000129028	THAP10	-	THAP domain containing 10	protein-coding
8808	chr1	42941721	42942350	+	0	NA	intron (NM_006516, intron 2 of 9)	intron (NM_006516, intron 2 of 9)	16833	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
62418	chr13	99299001	99299280	+	0	NA	intron (NM_004951, intron 1 of 1)	intron (NM_004951, intron 1 of 1)	8259	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
64975	chr14	37451851	37452030	+	0	NA	intron (NM_001195297, intron 13 of 14)	AluYi6|SINE|Alu	143309	NM_004496	3169		NM_004496	ENSG00000129514	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding
42995	chr11	73963921	73966250	+	0	NA	intron (NM_153614, intron 4 of 7)	intron (NM_153614, intron 4 of 7)	14059	NM_001377263	374407		NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
136572	chr2	177780801	177781000	+	0	NA	intron (NM_001077358, intron 8 of 18)	Tigger1|DNA|TcMar-Tigger	107578	NR_136171	105373764		NR_136171	ENSG00000229941	PDE11A-AS1	-	PDE11A antisense RNA 1	ncRNA
206768	chr7	36708651	36709350	+	0	NA	intron (NM_001177506, intron 1 of 21)	L1M4a1|LINE|L1	15494	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
95633	chr17	37744171	37744800	+	0	NA	intron (NM_000458, intron 1 of 8)	CpG	574	NM_001304286	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
189365	chr5	172478971	172479430	+	0	NA	Intergenic	Intergenic	-24675	NM_001017995	285590		NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
203512	chr7	673651	673950	+	0	NA	intron (NM_001164759, intron 4 of 10)	MLT1D|LTR|ERVL-MaLR	38724	NM_002735	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
232311	chr9	134655071	134655230	+	0	NA	intron (NM_001278074, intron 1 of 65)	intron (NM_001278074, intron 1 of 65)	-2307	NR_138049	414316		NR_138049		COL5A1-AS1	C9orf104|bA54A22.4	COL5A1 antisense RNA 1	ncRNA
57698	chr12	122853221	122853530	+	0	NA	intron (NM_001303099, intron 7 of 17)	intron (NM_001303099, intron 7 of 17)	17918	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
97291	chr17	43170901	43172600	+	0	NA	intron (NM_001291571, intron 1 of 20)	intron (NM_001291571, intron 1 of 20)	536	NM_001291572	4077		NM_005899	ENSG00000188554	NBR1	1A1-3B|IAI3B|M17S2|MIG19	NBR1 autophagy cargo receptor	protein-coding
208962	chr7	74188371	74188530	+	0	NA	intron (NM_022170, intron 2 of 6)	intron (NM_022170, intron 2 of 6)	-2748	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
222961	chr8	143183171	143183530	+	0	NA	Intergenic	Intergenic	-22696	NM_001130478	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
59837	chr13	30457071	30457550	+	0	NA	TTS (NM_001313893)	TTS (NM_001313893)	7017	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
54126	chr12	76511051	76511350	+	0	NA	intron (NM_001003712, intron 1 of 22)	L1PREC2|LINE|L1	48571	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
78110	chr15	90293171	90294050	+	0	NA	Intergenic	Intergenic	-27851	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
37392	chr11	17077031	17079230	+	0	NA	promoter-TSS (NM_001017)	promoter-TSS (NM_001017)	-463	NM_001017	6207		NM_001017	ENSG00000110700	RPS13	S13|uS15	ribosomal protein S13	protein-coding
214210	chr7	148703371	148703630	+	0	NA	intron (NM_001370664, intron 1 of 21)	intron (NM_001370664, intron 1 of 21)	3790	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
58780	chr12	132729321	132730000	+	0	NA	intron (NM_015114, intron 11 of 12)	GA-rich|Low_complexity|Low_complexity	18818	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
24875	chr10	926401	926800	+	0	NA	intron (NM_001351277, intron 1 of 17)	intron (NM_001351277, intron 1 of 17)	5105	NM_001351277	23185		NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	La ribonucleoprotein 4B	protein-coding
204494	chr7	4767151	4767450	+	0	NA	3' UTR (NM_001037165, exon 9 of 9)	3' UTR (NM_001037165, exon 9 of 9)	-8323	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
229320	chr9	120891321	120892100	+	0	NA	intron (NM_001286840, intron 1 of 14)	intron (NM_001286840, intron 1 of 14)	3186	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
23764	chr1	232943501	232944330	+	0	NA	Intergenic	MER101B|LTR|ERV1	-6696	NR_138025	84284		NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase|THEP1	nucleoside-triphosphatase, cancer-related	protein-coding
27566	chr10	32356621	32357750	+	0	NA	intron (NR_104163, intron 1 of 1)	intron (NR_104163, intron 1 of 1)	9821	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
51983	chr12	53954801	53955630	+	0	NA	exon (NM_173860, exon 1 of 2)	exon (NM_173860, exon 1 of 2)	312	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
225758	chr9	37211101	37211300	+	0	NA	intron (NM_001289119, intron 2 of 8)	intron (NM_001289119, intron 2 of 8)	90602	NM_001289120	84186		NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
10944	chr1	84159221	84160080	+	0	NA	intron (NM_182948, intron 1 of 9)	L1MB8|LINE|L1	-4534	NM_001242857	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
212664	chr7	129553871	129554550	+	0	NA	Intergenic	Intergenic	51679	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
179226	chr4	173537821	173538280	+	0	NA	non-coding (NR_136193, exon 4 of 4)	non-coding (NR_136193, exon 4 of 4)	7592	NR_003679	79804		NR_003679	ENSG00000237125	HAND2-AS1	DEIN|NBLA00301|UPH	HAND2 antisense RNA 1	ncRNA
761	chr1	1508801	1509000	+	0	NA	Intergenic	Intergenic	-3262	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
138264	chr2	203376251	203376350	+	0	NA	intron (NM_001375722, intron 3 of 10)	MER20|DNA|hAT-Charlie	47906	NM_001375721	10152		NM_005759	ENSG00000138443	ABI2	ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB	abl interactor 2	protein-coding
201263	chr6	144155471	144155900	+	0	NA	intron (NM_003764, intron 1 of 1)	intron (NM_003764, intron 1 of 1)	5168	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
132000	chr2	100584851	100585380	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-18624	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
115672	chr19	16160851	16161450	+	0	NA	TTS (NM_001300922)	TTS (NM_001300922)	12375	NM_054113	117286		NM_054113	ENSG00000141977	CIB3	KIP3	calcium and integrin binding family member 3	protein-coding
213302	chr7	135150271	135151300	+	0	NA	intron (NM_018295, intron 1 of 1)	AluSx3|SINE|Alu	2713	NM_018295	55281		NM_018295	ENSG00000146859	TMEM140	-	transmembrane protein 140	protein-coding
178936	chr4	158905951	158906500	+	0	NA	3' UTR (NM_001323916, exon 17 of 17)	3' UTR (NM_001323916, exon 17 of 17)	100386	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
206796	chr7	36790001	36790500	+	0	NA	Intergenic	Intergenic	-65701	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
239406	chrY	24205501	24205700	+	0	NA	Intergenic	CpG	9231	NR_001555	84559		NR_001555	ENSG00000291016	GOLGA2P2Y	GOLGA2LY|GOLGA2LY1|GOLGA2P2	GOLGA2 pseudogene 2 Y-linked	pseudo
95354	chr17	35844571	35844930	+	0	NA	exon (NM_003487, exon 15 of 16).2	exon (NM_003487, exon 15 of 16).2	24141	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
14552	chr1	144883971	144884650	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	166139	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
50241	chr12	46243301	46243600	+	0	NA	intron (NM_001077484, intron 1 of 16)	intron (NM_001077484, intron 1 of 16)	23066	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
18967	chr1	168603501	168603800	+	0	NA	Intergenic	LTR88a|LTR|Gypsy?	27045	NM_002995	6375		NM_002995	ENSG00000143184	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	X-C motif chemokine ligand 1	protein-coding
222855	chr8	142633121	142633680	+	0	NA	Intergenic	Intergenic	-5196	NR_134305	101928087		NR_134305	ENSG00000277332	LOC101928087	-	uncharacterized LOC101928087	ncRNA
108069	chr18	59898101	59898300	+	0	NA	Intergenic	Intergenic	-1796	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
97562	chr17	44085221	44085680	+	0	NA	intron (NM_001382393, intron 14 of 26)	AluJo|SINE|Alu	14539	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
210833	chr7	100965671	100966830	+	0	NA	intron (NM_005960, intron 8 of 11)	intron (NM_005960, intron 8 of 11)	-3373	NM_001164462	10071		NM_001164462	ENSG00000205277	MUC12	MUC-11|MUC-12|MUC11	mucin 12, cell surface associated	protein-coding
123639	chr19	54633551	54633850	+	0	NA	intron (NR_103518, intron 8 of 13).4	intron (NR_103518, intron 8 of 13).4	3183	NM_001278398	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
228984	chr9	113560071	113560630	+	0	NA	intron (NM_001276261, intron 10 of 14)	intron (NM_001276261, intron 10 of 14)	-4604	NM_134427	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
238067	chrX	135986701	135986900	+	0	NA	intron (NM_001379110, intron 2 of 17)	intron (NM_001379110, intron 2 of 17)	1365	NM_006359	10479		NM_006359	ENSG00000198689	SLC9A6	MRSA|MRXSCH|NHE6	solute carrier family 9 member A6	protein-coding
65784	chr14	54563971	54564500	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2893	NM_015589	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
107956	chr18	58303071	58303630	+	0	NA	intron (NM_001243960, intron 5 of 28)	intron (NM_001243960, intron 5 of 28)	81779	NM_001144966	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
211611	chr7	105878751	105879500	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-2526	NM_001385596	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
152409	chr22	20562601	20562800	+	0	NA	intron (NM_001003891, intron 5 of 17)	L1MEd|LINE|L1	54653	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
83620	chr16	28209751	28210590	+	0	NA	intron (NM_001270940, intron 1 of 24)	(ATATAC)n|Simple_repeat|Simple_repeat	1795	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
166821	chr3	122787901	122788300	+	0	NA	intron (NM_024610, intron 1 of 7)	intron (NM_024610, intron 1 of 7)	5731	NM_024610	79663		NM_024610	ENSG00000169087	HSPBAP1	PASS1	HSPB1 associated protein 1	protein-coding
14044	chr1	120751121	120751380	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	27311	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
85026	chr16	31702751	31703180	+	0	NA	intron (NR_024034, intron 3 of 8)	intron (NR_024034, intron 3 of 8)	2352	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
132281	chr2	104863621	104864080	+	0	NA	Intergenic	CpG	8745	NR_110374	102682016		NR_110373	ENSG00000229743	LINC01159	linc-Brn1b	long intergenic non-protein coding RNA 1159	ncRNA
185786	chr5	132410411	132412880	+	0	NA	intron (NR_161242, intron 1 of 3)	intron (NR_161242, intron 1 of 3)	716	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
55466	chr12	104681951	104682050	+	0	NA	intron (NM_018413, intron 2 of 2)	AluY|SINE|Alu	90367	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
128528	chr2	60765121	60765380	+	0	NA	intron (NM_022894, intron 3 of 21)	AluJr|SINE|Alu	8982	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
133328	chr2	113899201	113899800	+	0	NA	intron (NM_001277140, intron 1 of 11)	intron (NM_001277140, intron 1 of 11)	-8508	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
141196	chr2	239319101	239319500	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	13838	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
88003	chr16	80824771	80825000	+	0	NA	Intergenic	Intergenic	-20287	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
207100	chr7	40052351	40052850	+	0	NA	intron (NM_003718, intron 7 of 13)	intron (NM_003718, intron 7 of 13)	82022	NM_138701	136647		NM_138701	ENSG00000168303	MPLKIP	ABHS|C7orf11|ORF20|TTD4	M-phase specific PLK1 interacting protein	protein-coding
164157	chr3	56773371	56773530	+	0	NA	intron (NM_001289698, intron 3 of 10)	intron (NM_001289698, intron 3 of 10)	2267	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
59014	chr13	20182221	20182580	+	0	NA	Intergenic	Intergenic	10538	NM_004004	2706		NM_004004	ENSG00000165474	GJB2	BAPS|CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein beta 2	protein-coding
218681	chr8	58360901	58361900	+	0	NA	Intergenic	L1MA6|LINE|L1	-49864	NM_001330535	137886		NM_001077619	ENSG00000215114	UBXN2B	p37	UBX domain protein 2B	protein-coding
199993	chr6	128241301	128241500	+	0	NA	intron (NM_001291981, intron 4 of 32).2	MER5A|DNA|hAT-Charlie	213535	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
107606	chr18	48919021	48919780	+	0	NA	TTS (NM_001190823)	TTS (NM_001190823)	23407	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
221914	chr8	129179701	129179900	+	0	NA	Intergenic	Intergenic	61440	NR_033916	728724		NR_033916	ENSG00000229140	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
183075	chr5	73625671	73626830	+	0	NA	promoter-TSS (NM_001080479)	promoter-TSS (NM_001080479)	92	NM_001177693	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
212763	chr7	129947551	129948000	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	5185	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
155807	chr22	39309671	39309900	+	0	NA	Intergenic	Intergenic	4126	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
31439	chr10	95831171	95831600	+	0	NA	intron (NM_001164183, intron 2 of 7)	MIRb|SINE|MIR	75222	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
35431	chr11	1438371	1438900	+	0	NA	intron (NM_001256630, intron 3 of 19)	intron (NM_001256630, intron 3 of 19)	27483	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
162002	chr3	46380751	46381200	+	0	NA	intron (NR_125406, intron 2 of 3)	L4_A_Mam|LINE|RTE-X	10833	NM_001100168	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
130514	chr2	85602141	85604400	+	0	NA	promoter-TSS (NM_001031738)	promoter-TSS (NM_001031738)	409	NR_046347	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
129453	chr2	69556101	69556500	+	0	NA	intron (NM_001371577, intron 3 of 14)	L1ME2|LINE|L1	-36129	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
166327	chr3	112811821	112812280	+	0	NA	intron (NR_149026, intron 2 of 4)	intron (NR_149026, intron 2 of 4)	9572	NR_149026	100129297		NR_149026		CD200R1L-AS1	-	CD200R1L antisense RNA 1	ncRNA
181095	chr5	36901751	36901850	+	0	NA	intron (NM_133433, intron 1 of 46)	AluSp|SINE|Alu	25031	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
179077	chr4	167111701	167111900	+	0	NA	intron (NM_016950, intron 2 of 11)	AluJb|SINE|Alu	122626	NM_001204353	50859		NM_016950	ENSG00000196104	SPOCK3	HSAJ1454|TES-3|TICN3	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	protein-coding
208616	chr7	72960871	72961030	+	0	NA	intron (NM_198924, intron 3 of 4)	intron (NM_198924, intron 3 of 4)	6003	NM_001317815	378108		NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
19384	chr1	174018771	174019130	+	0	NA	intron (NM_172071, intron 1 of 19)	intron (NM_172071, intron 1 of 19)	3407	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
145300	chr20	41046771	41047250	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	18188	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
176729	chr4	101333921	101334250	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	-3671	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
193948	chr6	31670751	31671250	+	0	NA	promoter-TSS (NM_021221)	promoter-TSS (NM_021221)	49	NM_021221	58496		NM_021221	ENSG00000240053	LY6G5B	C6orf19|G5b	lymphocyte antigen 6 family member G5B	protein-coding
54058	chr12	76020001	76021650	+	0	NA	Intergenic	Intergenic	10951	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
166243	chr3	112293301	112294050	+	0	NA	intron (NM_183061, intron 1 of 28)	intron (NM_183061, intron 1 of 28)	541	NM_183061	285335		NM_183061	ENSG00000172139	SLC9C1	NHE|NHE-10|SLC9A10|sperm-NHE	solute carrier family 9 member C1	protein-coding
108110	chr18	62190251	62190750	+	0	NA	intron (NR_144408, intron 1 of 32)	AluSg|SINE|Alu	3245	NR_144403	57614		NM_020854	ENSG00000134444	RELCH	HsT3308|HsT885|KIAA1468	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	protein-coding
67701	chr14	73248851	73249150	+	0	NA	intron (NM_173462, intron 5 of 25)	AluJb|SINE|Alu	-2999	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
143176	chr20	24157151	24157650	+	0	NA	Intergenic	Intergenic	-42367	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
52874	chr12	57182701	57183700	+	0	NA	intron (NM_002332, intron 34 of 88)	intron (NM_002332, intron 34 of 88)	-11304	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
209299	chr7	75993571	75995380	+	0	NA	intron (NR_156695, intron 1 of 10)	CpG	120	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
139297	chr2	219519251	219519550	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	4918	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
217563	chr8	29405451	29406150	+	0	NA	Intergenic	L1PA16|LINE|L1	-55116	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
200583	chr6	136548801	136549000	+	0	NA	intron (NM_003980, intron 1 of 17)	intron (NM_003980, intron 1 of 17)	1919	NM_001198616	9053		NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
3442	chr1	15886851	15887600	+	0	NA	intron (NM_015001, intron 3 of 14)	AluJo|SINE|Alu	-39078	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
149815	chr21	35002071	35002450	+	0	NA	intron (NM_001754, intron 2 of 8)	L2a|LINE|L2	37166	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
155301	chr22	38179651	38180500	+	0	NA	intron (NM_001199562, intron 1 of 15)	intron (NM_001199562, intron 1 of 15)	1755	NM_001199562	8398		NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
7421	chr1	32959351	32959450	+	0	NA	intron (NM_001127361, intron 1 of 8)	intron (NM_001127361, intron 1 of 8)	5409	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
204006	chr7	1875171	1875730	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	-31197	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
155034	chr22	37480471	37480830	+	0	NA	intron (NR_029413, intron 1 of 6)	intron (NR_029413, intron 1 of 6)	5734	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
101180	chr17	65177871	65178230	+	0	NA	intron (NM_003835, intron 9 of 18)	intron (NM_003835, intron 9 of 18)	40680	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
226292	chr9	68325621	68326180	+	0	NA	Intergenic	LTR5A|LTR|ERVK	23033	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
2792	chr1	10906621	10906880	+	0	NA	Intergenic	Intergenic	59937	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
185264	chr5	123666121	123666400	+	0	NA	Intergenic	Intergenic	120843	NM_001044723	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
201686	chr6	149547321	149547580	+	0	NA	Intergenic	L2a|LINE|L2	-1407	NM_139126	85313		NM_139126	ENSG00000131013	PPIL4	HDCME13P	peptidylprolyl isomerase like 4	protein-coding
131716	chr2	97871671	97871830	+	0	NA	intron (NM_015348, intron 4 of 40)	LTR8B|LTR|ERV1	124198	NM_015348	23505		NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
87477	chr16	71737301	71737500	+	0	NA	intron (NM_001128, intron 21 of 22)	AluSz|SINE|Alu	-12699	NM_015020	23035		NM_015020	ENSG00000040199	PHLPP2	PHLPPL|PPM3B	PH domain and leucine rich repeat protein phosphatase 2	protein-coding
184920	chr5	112923141	112924400	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-1543	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
22950	chr1	225996751	225997450	+	0	NA	intron (NM_152608, intron 1 of 6)	LTR65|LTR|ERV1	2243	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
3516	chr1	16057201	16057800	+	0	NA	TTS (NM_182623)	TTS (NM_182623)	8738	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
66509	chr14	61713801	61714200	+	0	NA	intron (NM_001243084, intron 1 of 14)	MER21A|LTR|ERVL	16378	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
170255	chr3	184249401	184250000	+	0	NA	promoter-TSS (NM_005787)	promoter-TSS (NM_005787)	28	NM_014693	110599583		NM_014693	ENSG00000284917	EEF1AKMT4-ECE2	ECE-2|ECE2	EEF1AKMT4-ECE2 readthrough	protein-coding
81859	chr16	11630451	11630550	+	0	NA	Intergenic	L2b|LINE|L2	-37955	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
85851	chr16	57020051	57020650	+	0	NA	intron (NM_001384955, intron 2 of 47)	intron (NM_001384955, intron 2 of 47)	30793	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
50958	chr12	49543151	49543630	+	0	NA	exon (NM_012284, exon 5 of 15)	exon (NM_012284, exon 5 of 15)	4360	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
191969	chr6	16149151	16149250	+	0	NA	TTS (NM_013262)	TTS (NM_013262)	7644	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
234315	chrX	13733901	13735200	+	0	NA	promoter-TSS (NM_003611)	promoter-TSS (NM_003611)	70	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
13404	chr1	113968601	113969250	+	0	NA	intron (NM_181358, intron 11 of 13)	AluSx|SINE|Alu	-10466	NM_001286353	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
41340	chr11	65923421	65923680	+	0	NA	Intergenic	L2a|LINE|L2	4124	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
86087	chr16	57634951	57635050	+	0	NA	intron (NM_001145772, intron 1 of 14)	intron (NM_001145772, intron 1 of 14)	-4492	NM_001145774	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
147925	chr20	62916271	62916430	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	10155	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
78451	chr15	92839771	92840300	+	0	NA	Intergenic	Intergenic	-42808	NR_037600	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
138786	chr2	216083001	216083400	+	0	NA	intron (NM_001142310, intron 2 of 3)	intron (NM_001142310, intron 2 of 3)	1281	NM_138390	92691		NM_138390	ENSG00000163449	TMEM169	-	transmembrane protein 169	protein-coding
100815	chr17	64067801	64068000	+	0	NA	intron (NM_001433, intron 7 of 21)	intron (NM_001433, intron 7 of 21)	-47266	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
79862	chr16	1495721	1496030	+	0	NA	intron (NM_016111, intron 3 of 20)	intron (NM_016111, intron 3 of 20)	2515	NM_016111	9894		NM_016111	ENSG00000100726	TELO2	CLK2|TEL2|YHFS	telomere maintenance 2	protein-coding
163835	chr3	52461801	52462080	+	0	NA	intron (NM_001276294, intron 3 of 13)	intron (NM_001276294, intron 3 of 13)	6336	NM_001276294	11188		NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
110203	chr19	1734071	1734230	+	0	NA	Intergenic	Intergenic	-19356	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
60493	chr13	41310221	41311500	+	0	NA	promoter-TSS (NM_018527)	promoter-TSS (NM_018527)	-407	NM_024561	79612		NM_018527	ENSG00000172766	NAA16	NARG1L	N-alpha-acetyltransferase 16, NatA auxiliary subunit	protein-coding
85158	chr16	46612121	46612630	+	0	NA	intron (NM_001324319, intron 4 of 11)	L2|LINE|L2	9004	NM_024745	79801		NM_024745	ENSG00000171241	SHCBP1	PAL	SHC binding and spindle associated 1	protein-coding
239094	chrY	10480351	10480650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	569702	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
193589	chr6	30689471	30689900	+	0	NA	intron (NM_001270707, intron 2 of 3).6	intron (NM_001270707, intron 2 of 3).6	1044	NR_073072	11270		NM_007243	ENSG00000137404	NRM	NRM29	nurim	protein-coding
173367	chr4	7865501	7866480	+	0	NA	intron (NM_001371091, intron 4 of 17)	AluSq|SINE|Alu	6318	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
75471	chr15	65916871	65917430	+	0	NA	intron (NR_169557, intron 17 of 26)	intron (NR_169557, intron 17 of 26)	47659	NM_001206836	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
71479	chr14	105950471	105950630	+	0	NA	Intergenic	Intergenic	21719	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
105417	chr17	82858351	82858920	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-18613	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
235419	chrX	45765521	45766250	+	0	NA	Intergenic	Intergenic	-18761	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
172259	chr4	1402451	1403130	+	0	NA	TTS (NM_001290079)	TTS (NM_001290079)	3652	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
156115	chr22	40094271	40094930	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	49783	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
116195	chr19	17474051	17474350	+	0	NA	intron (NM_198580, intron 1 of 11)	AluJo|SINE|Alu	3676	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
169674	chr3	171809451	171810550	+	0	NA	intron (NM_001130081, intron 1 of 25)	CpG	483	NM_001130081	5337		NM_002662	ENSG00000075651	PLD1	CVDD|CVDP1	phospholipase D1	protein-coding
88178	chr16	81716491	81716980	+	0	NA	Intergenic	LTR8|LTR|ERV1	51381	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
20422	chr1	198206171	198206330	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	49252	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
77857	chr15	88878721	88878980	+	0	NA	intron (NM_001307952, intron 5 of 5)	intron (NM_001307952, intron 5 of 5)	16694	NM_001307952	145864		NM_178232	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
43754	chr11	86144451	86144900	+	0	NA	Intergenic	Intergenic	-74815	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
47556	chr12	4293501	4294530	+	0	NA	intron (NM_001759, intron 4 of 4)	intron (NM_001759, intron 4 of 4)	-17831	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
84519	chr16	30516371	30516700	+	0	NA	intron (NM_002209, intron 25 of 30)	L2b|LINE|L2	10031	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
49949	chr12	40107001	40108180	+	0	NA	Intergenic	Intergenic	-1509	NM_052885	114134		NM_052885	ENSG00000151229	SLC2A13	HMIT	solute carrier family 2 member 13	protein-coding
163769	chr3	52377771	52378330	+	0	NA	intron (NM_015512, intron 46 of 77)	intron (NM_015512, intron 46 of 77)	31958	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
193660	chr6	30909051	30909250	+	0	NA	exon (NM_001517, exon 2 of 14).4	exon (NM_001517, exon 2 of 14).4	943	NM_001517	2968		NM_001517	ENSG00000213780	GTF2H4	P52|TFB2|TFIIH	general transcription factor IIH subunit 4	protein-coding
219108	chr8	65944071	65945200	+	0	NA	Intergenic	Intergenic	-70343	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
63330	chr13	114014801	114015350	+	0	NA	intron (NM_001320822, intron 14 of 23).2	intron (NM_001320822, intron 14 of 23).2	-40999	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
62850	chr13	110255751	110255850	+	0	NA	intron (NM_001845, intron 1 of 51)	intron (NM_001845, intron 1 of 51)	51357	NM_001303110	1282		NM_001845	ENSG00000187498	COL4A1	BSVD|BSVD1|COL4A1s|PADMAL|RATOR	collagen type IV alpha 1 chain	protein-coding
232817	chr9	136721571	136722150	+	0	NA	intron (NM_152421, intron 2 of 4)	intron (NM_152421, intron 2 of 4)	4377	NR_002975	677824		NR_002975	ENSG00000280496	SNORA17B	ACA43|SNORA43	small nucleolar RNA, H/ACA box 17B	snoRNA
102819	chr17	76455921	76456430	+	0	NA	intron (NM_001166579, intron 1 of 6)	AluSp|SINE|Alu	2824	NM_001166579	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
53673	chr12	68442501	68443000	+	0	NA	intron (NR_120458, intron 1 of 3)	THE1A-int|LTR|ERVL-MaLR	8734	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
224965	chr9	33065721	33065980	+	0	NA	intron (NM_018225, intron 4 of 11)	HAL1|LINE|L1	10824	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
85396	chr16	50300971	50301530	+	0	NA	intron (NM_001114, intron 10 of 25)	intron (NM_001114, intron 10 of 25)	8634	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
141072	chr2	238281951	238282430	+	0	NA	intron (NM_022817, intron 1 of 22)	L2a|LINE|L2	6420	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
55280	chr12	102962021	102962280	+	0	NA	Intergenic	Intergenic	-3709	NM_001354304	5053		NM_000277	ENSG00000171759	PAH	PH|PKU|PKU1	phenylalanine hydroxylase	protein-coding
88871	chr16	87695371	87695730	+	0	NA	intron (NM_020655, intron 4 of 4)	intron (NM_020655, intron 4 of 4)	70436	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
37022	chr11	12099271	12099430	+	0	NA	Intergenic	L2c|LINE|L2	-11226	NM_001282668	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
208134	chr7	63154251	63154600	+	0	NA	Intergenic	L1HS|LINE|L1	149631	NR_003952	643955		NR_003952	ENSG00000290558	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
119439	chr19	40397201	40397780	+	0	NA	exon (NM_181882, exon 7 of 7)	exon (NM_181882, exon 7 of 7)	-7309	NM_144685	147746		NM_144685	ENSG00000160396	HIPK4	-	homeodomain interacting protein kinase 4	protein-coding
1696	chr1	4708921	4709180	+	0	NA	intron (NM_018836, intron 1 of 5)	intron (NM_018836, intron 1 of 5)	54441	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
34760	chr11	193321	193580	+	0	NA	intron (NM_145651, intron 1 of 2)	intron (NM_145651, intron 1 of 2)	372	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
131133	chr2	91498521	91498850	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	161264	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
168856	chr3	152280401	152280830	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-10989	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
166570	chr3	115814721	115815080	+	0	NA	intron (NM_002338, intron 6 of 6)	intron (NM_002338, intron 6 of 6)	90226	NR_145779	109623450		NR_145779		SNORD155	-	small nucleolar RNA, C/D box 155	snoRNA
169773	chr3	172665401	172665980	+	0	NA	intron (NM_001146276, intron 1 of 4)	L1PA6|LINE|L1	45377	NM_001146276	57552		NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
134285	chr2	135840501	135840700	+	0	NA	3' UTR (NM_005915, exon 17 of 17)	3' UTR (NM_005915, exon 17 of 17)	-3416	NM_002299	3938		NM_002299	ENSG00000115850	LCT	LAC|LPH|LPH1	lactase	protein-coding
189607	chr5	175895371	175896330	+	0	NA	Intergenic	Intergenic	24272	NM_001008220	10814		NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
226127	chr9	63122451	63122750	+	0	NA	intron (NR_046175, intron 2 of 3)	AluJr|SINE|Alu	2619	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
90426	chr17	1349901	1350500	+	0	NA	intron (NR_024058, intron 6 of 6)	AluSp|SINE|Alu	50022	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
6782	chr1	30762521	30763030	+	0	NA	Intergenic	Intergenic	-5001	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
230530	chr9	128361801	128362950	+	0	NA	TTS (NM_005094)	TTS (NM_005094)	-8944	NM_001135947	81605		NM_030914	ENSG00000167118	URM1	C9orf74	ubiquitin related modifier 1	protein-coding
161748	chr3	44554721	44555730	+	0	NA	promoter-TSS (NM_025169)	promoter-TSS (NM_025169)	32	NM_001288590	55888		NM_018651	ENSG00000196345	ZKSCAN7	ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39	zinc finger with KRAB and SCAN domains 7	protein-coding
30119	chr10	74007171	74007530	+	0	NA	intron (NM_014000, intron 1 of 21)	intron (NM_014000, intron 1 of 21)	9234	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
40187	chr11	62919251	62919950	+	0	NA	intron (NM_000738, intron 1 of 1)	(TCCCTCC)n|Simple_repeat|Simple_repeat	1763	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
15587	chr1	150581251	150582000	+	0	NA	Intergenic	AluJb|SINE|Alu	-1887	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
155978	chr22	39907171	39908360	+	0	NA	intron (NM_004810, intron 1 of 7)	AluJb|SINE|Alu	6681	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
187409	chr5	141951301	141951730	+	0	NA	exon (NM_016580, exon 2 of 4)	exon (NM_016580, exon 2 of 4)	6687	NM_016580	51294		NM_016580	ENSG00000113555	PCDH12	DMJDS1|VE-cadherin-2|VECAD2	protocadherin 12	protein-coding
34795	chr11	239401	240050	+	0	NA	intron (NM_002817, intron 2 of 12)	intron (NM_002817, intron 2 of 12)	2749	NM_002817	5719		NM_002817	ENSG00000185627	PSMD13	HSPC027|Rpn9|S11|p40.5	proteasome 26S subunit, non-ATPase 13	protein-coding
105591	chr18	515071	515500	+	0	NA	promoter-TSS (NR_136505)	promoter-TSS (NR_136505)	9	NR_136505	105376854		NR_136505	ENSG00000264265	LINC01925	-	long intergenic non-protein coding RNA 1925	ncRNA
68284	chr14	77121001	77122280	+	0	NA	Intergenic	Intergenic	19104	NM_001364172	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
215090	chr7	155069951	155070500	+	0	NA	promoter-TSS (NM_024012)	promoter-TSS (NM_024012)	-99	NM_024012	3361		NM_024012	ENSG00000157219	HTR5A	5-HT5A	5-hydroxytryptamine receptor 5A	protein-coding
189957	chr5	177424601	177424800	+	0	NA	Intergenic	L2c|LINE|L2	-1976	NM_001004106	2870		NM_002082	ENSG00000198055	GRK6	GPRK6	G protein-coupled receptor kinase 6	protein-coding
216945	chr8	22973421	22974080	+	0	NA	Intergenic	Intergenic	-13501	NM_001160036	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
214804	chr7	151194121	151194780	+	0	NA	intron (NM_001304419, intron 13 of 18)	intron (NM_001304419, intron 13 of 18)	-6658	NM_080871	136371		NM_080871	ENSG00000146926	ASB10	GLC1F	ankyrin repeat and SOCS box containing 10	protein-coding
224851	chr9	28117451	28117550	+	0	NA	intron (NM_152570, intron 5 of 6)	L1HS|LINE|L1	-543634	NM_001256054	203228		NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1	C9orf72-SMCR8 complex subunit	protein-coding
117637	chr19	23684201	23684830	+	0	NA	intron (NM_138330, intron 1 of 3)	AluSp|SINE|Alu	2697	NM_138330	171392		NM_138330	ENSG00000197372	ZNF675	TBZF|TIZ	zinc finger protein 675	protein-coding
139122	chr2	218987871	218988230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2866	NM_017521	54738		NM_017521	ENSG00000163497	FEV	HSRNAFEV|PET-1	FEV transcription factor, ETS family member	protein-coding
133263	chr2	113437431	113438630	+	0	NA	intron (NM_172003, intron 1 of 14)	intron (NM_172003, intron 1 of 14)	339	NR_138473	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
47752	chr12	6536151	6536730	+	0	NA	intron (NM_001256799, intron 1 of 7)	intron (NM_001256799, intron 1 of 7)	1176	NM_001256799	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
202353	chr6	157640071	157640230	+	0	NA	intron (NM_024630, intron 5 of 8)	intron (NM_024630, intron 5 of 8)	111018	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
86439	chr16	66910601	66910800	+	0	NA	intron (NM_001204746, intron 13 of 16)	intron (NM_001204746, intron 13 of 16)	8185	NM_001204744	1014		NM_004062	ENSG00000166589	CDH16	-	cadherin 16	protein-coding
200055	chr6	129893801	129894080	+	0	NA	Intergenic	Intergenic	-32625	NM_001010876	253582		NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
59638	chr13	28138901	28140700	+	0	NA	promoter-TSS (NR_029383)	promoter-TSS (NR_029383)	-626	NR_029383	100288730		NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
25173	chr10	5434071	5434900	+	0	NA	intron (NM_001047160, intron 3 of 11)	HAL1M8|LINE|L1	-12066	NR_073040	10276		NM_005863	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
45640	chr11	118995071	118995230	+	0	NA	Intergenic	AluSx|SINE|Alu	-2988	NR_104051	338657		NM_198489	ENSG00000186166	CENATAC	CCDC84|DLNB14|MVA4	centrosomal AT-AC splicing factor	protein-coding
234426	chrX	16826121	16826930	+	0	NA	intron (NM_018360, intron 3 of 9)	intron (NM_018360, intron 3 of 9)	40059	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
213781	chr7	140719921	140720180	+	0	NA	3' UTR (NM_001378467, exon 19 of 19)	3' UTR (NM_001378467, exon 19 of 19)	-22973	NR_024454	100134713		NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
58491	chr12	132159001	132159600	+	0	NA	Intergenic	Intergenic	14843	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
2269	chr1	8926621	8928200	+	0	NA	Intergenic	Intergenic	-18458	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
58805	chr12	132788701	132789100	+	0	NA	intron (NM_005895, intron 13 of 23)	intron (NM_005895, intron 13 of 23)	-27068	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
1400	chr1	2550601	2551000	+	0	NA	intron (NR_037844, intron 5 of 6)	MLT1B|LTR|ERVL-MaLR	-5565	NM_001297605	8764		NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
70998	chr14	104726971	104727530	+	0	NA	intron (NM_152328, intron 1 of 12)	intron (NM_152328, intron 1 of 12)	-2594	NM_199165	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
43046	chr11	74169821	74170080	+	0	NA	intron (NM_015531, intron 1 of 30)	intron (NM_015531, intron 1 of 30)	1052	NM_015531	26005		NM_015531	ENSG00000168014	C2CD3	OFD14	C2 domain containing 3 centriole elongation regulator	protein-coding
238048	chrX	135423171	135423580	+	0	NA	intron (NM_203306, intron 1 of 1)	intron (NM_203306, intron 1 of 1)	1431	NM_203306	399668		NM_203306	ENSG00000178947	SMIM10L2A	LED|LINC00086|LINC00087|LINC0086|NCRNA00086|NCRNA00087|SMIM10L2B	small integral membrane protein 10 like 2A	protein-coding
182144	chr5	56314571	56314800	+	0	NA	Intergenic	Intergenic	-81355	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
236724	chrX	78104801	78105430	+	0	NA	intron (NM_000291, intron 1 of 10)	intron (NM_000291, intron 1 of 10)	867	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
109074	chr18	79918771	79919480	+	0	NA	intron (NM_001146343, intron 3 of 3)	intron (NM_001146343, intron 3 of 3)	32528	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
29277	chr10	69201951	69202830	+	0	NA	intron (NM_001301683, intron 12 of 15)	intron (NM_001301683, intron 12 of 15)	-17942	NM_025130	80201		NM_025130	ENSG00000156510	HKDC1	RP92	hexokinase domain containing 1	protein-coding
194131	chr6	31969671	31970130	+	0	NA	TTS (NM_006929).3	TTS (NM_006929).3	-1275	NR_026717	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
128739	chr2	61890601	61890800	+	0	NA	intron (NM_001321781, intron 1 of 2)	AluSz|SINE|Alu	2000	NM_001321782	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
54235	chr12	81644571	81644830	+	0	NA	intron (NM_001220474, intron 2 of 30)	intron (NM_001220474, intron 2 of 30)	-46329	NM_001220478	8499		NM_003625	ENSG00000139220	PPFIA2	-	PTPRF interacting protein alpha 2	protein-coding
179099	chr4	168482871	168483750	+	0	NA	Intergenic	MLT1D-int|LTR|ERVL-MaLR	-2796	NM_001012967	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
224300	chr9	6484221	6484480	+	0	NA	intron (NR_046386, intron 8 of 16)	AluJr4|SINE|Alu	71151	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
50812	chr12	49083121	49083580	+	0	NA	Intergenic	AluSx1|SINE|Alu	11451	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
24390	chr1	242017701	242017900	+	0	NA	Intergenic	Intergenic	-18702	NM_001004343	440738		NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule associated protein 1 light chain 3 gamma	protein-coding
226974	chr9	81688671	81688900	+	0	NA	promoter-TSS (NR_109772)	promoter-TSS (NR_109772)	750	NM_001303104	7088		NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1|TLE-1	TLE family member 1, transcriptional corepressor	protein-coding
91215	chr17	3923621	3924000	+	0	NA	TTS (NM_005173)	TTS (NM_005173)	-7345	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
209277	chr7	75920221	75920880	+	0	NA	intron (NM_001367562, intron 2 of 16)	intron (NM_001367562, intron 2 of 16)	5353	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
139279	chr2	219495271	219495980	+	0	NA	promoter-TSS (NM_001286811)	promoter-TSS (NM_001286811)	-730	NM_001286811	100996693		NM_001286811	ENSG00000286095	SPEGNB	-	SPEG neighbor	protein-coding
201328	chr6	144415171	144415330	+	0	NA	intron (NM_007124, intron 2 of 73)	Tigger3b|DNA|TcMar-Tigger	9595	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
33024	chr10	110748401	110748800	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	104264	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
223983	chr9	2043301	2043500	+	0	NA	intron (NM_003070, intron 4 of 33)	intron (NM_003070, intron 4 of 33)	21455	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
220698	chr8	101632351	101632730	+	0	NA	intron (NM_024915, intron 11 of 15)	intron (NM_024915, intron 11 of 15)	140101	NM_001330593	79977		NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|PPCD4|TFCP2L3	grainyhead like transcription factor 2	protein-coding
74098	chr15	52793771	52794130	+	0	NA	Intergenic	Intergenic	-3614	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
1090	chr1	1969021	1969280	+	0	NA	intron (NM_001304360, intron 10 of 38)	intron (NM_001304360, intron 10 of 38)	34636	NM_001304360	85452		NM_001003808	ENSG00000142609	CFAP74	C1orf222|CILD49|KIAA1751	cilia and flagella associated protein 74	protein-coding
24365	chr1	241531351	241532150	+	0	NA	promoter-TSS (NM_003679)	promoter-TSS (NM_003679)	-628	NM_003679	8564		NM_003679	ENSG00000117009	KMO	dJ317G22.1	kynurenine 3-monooxygenase	protein-coding
179142	chr4	169604571	169604800	+	0	NA	intron (NR_164631, intron 2 of 14)	MamRep605|LTR?|LTR?	7898	NM_001199400	4750		NM_012224	ENSG00000137601	NEK1	ALS24|NY-REN-55|OFD2|SRPS2|SRPS2A|SRTD6	NIMA related kinase 1	protein-coding
216671	chr8	22147851	22148400	+	0	NA	3' UTR (NM_139278, exon 8 of 8)	3' UTR (NM_139278, exon 8 of 8)	-6218	NM_001316965	80346		NM_025232	ENSG00000168476	REEP4	C8orf20|PP432|Yip2c	receptor accessory protein 4	protein-coding
193355	chr6	30304071	30304230	+	0	NA	intron (NR_102326, intron 1 of 2)	intron (NR_102326, intron 1 of 2)	21984	NR_052012	414778		NR_052012	ENSG00000270604	HCG17	HCG18|LINC00046|NCRNA00046	HLA complex group 17	ncRNA
121637	chr19	47467771	47468500	+	0	NA	intron (NM_015063, intron 1 of 9)	L2a|LINE|L2	3758	NM_015063	6543		NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
174206	chr4	37604771	37605150	+	0	NA	intron (NM_001085399, intron 6 of 6)	L1MC4a|LINE|L1	20727	NM_018302	55286		NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
236623	chrX	74546901	74547530	+	0	NA	Intergenic	Intergenic	67409	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
6551	chr1	28647801	28650500	+	0	NA	TTS (NR_146731)	TTS (NR_146731)	550	NR_004407	26824		NR_004407	ENSG00000274978	RNU11	RNU11-1|U11	RNA, U11 small nuclear	snRNA
223212	chr8	143589671	143590030	+	0	NA	exon (NM_001130053, exon 3 of 10).2	exon (NM_001130053, exon 3 of 10).2	7563	NM_001130057	1936		NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
140074	chr2	231440671	231440830	+	0	NA	Intergenic	AluSx|SINE|Alu	15186	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
216358	chr8	17575901	17576300	+	0	NA	promoter-TSS (NM_006207)	promoter-TSS (NM_006207)	-333	NM_006207	5157		NM_006207	ENSG00000104213	PDGFRL	PDGRL|PRLTS	platelet derived growth factor receptor like	protein-coding
128951	chr2	64612721	64612980	+	0	NA	non-coding (NR_034023, exon 2 of 4)	non-coding (NR_034023, exon 2 of 4)	5538	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
102952	chr17	76685671	76685830	+	0	NA	intron (NM_001008528, intron 2 of 3)	intron (NM_001008528, intron 2 of 3)	2913	NM_001363769	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
124011	chr19	55466601	55466980	+	0	NA	Intergenic	MER51D|LTR|ERV1	-5148	NM_024710	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
118904	chr19	38718471	38718830	+	0	NA	intron (NM_004924, intron 11 of 20)	intron (NM_004924, intron 11 of 20)	25824	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
136749	chr2	181305301	181306050	+	0	NA	promoter-TSS (NR_039637)	promoter-TSS (NR_039637)	-23	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
14276	chr1	143513201	143513730	+	0	NA	Intergenic	Intergenic	-88781	NR_027356	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
206747	chr7	36670701	36671430	+	0	NA	intron (NM_001177506, intron 3 of 21)	intron (NM_001177506, intron 3 of 21)	53429	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
11241	chr1	88937701	88937900	+	0	NA	intron (NM_001349450, intron 14 of 14)	L1MC4|LINE|L1	-46233	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
15249	chr1	149619001	149619280	+	0	NA	intron (NR_111950, intron 1 of 8)	MER77|LTR|ERVL	12128	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
42462	chr11	69638901	69639630	+	0	NA	Intergenic	CpG	-1891	NM_053056	595		NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
210443	chr7	100103571	100103730	+	0	NA	exon (NM_001363671, exon 6 of 15)	exon (NM_001363671, exon 6 of 15)	2002	NM_001363671	9179		NM_004722	ENSG00000221838	AP4M1	CPSQ3|MU-4|MU-ARP2|SPG50	adaptor related protein complex 4 subunit mu 1	protein-coding
155850	chr22	39454771	39454930	+	0	NA	Intergenic	Intergenic	-2162	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
207157	chr7	43590101	43590330	+	0	NA	intron (NM_004760, intron 1 of 6)	AluJb|SINE|Alu	7107	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
164100	chr3	56611871	56612550	+	0	NA	intron (NR_148366, intron 11 of 18)	L1MA4A|LINE|L1	51836	NM_015224	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
137159	chr2	191090521	191090780	+	0	NA	intron (NM_003151, intron 3 of 23)	AluY|SINE|Alu	60344	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
65743	chr14	53155271	53155830	+	0	NA	intron (NR_110062, intron 1 of 2)	intron (NR_110062, intron 1 of 2)	2196	NR_110062	101927620		NR_110062	ENSG00000258731	DDHD1-DT	-	DDHD1 divergent transcript	ncRNA
179393	chr4	183660551	183661400	+	0	NA	intron (NM_021942, intron 1 of 29)	AluSx4|SINE|Alu	1682	NM_021942	60684		NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S|LGMDR18	trafficking protein particle complex subunit 11	protein-coding
226038	chr9	42851971	42852680	+	0	NA	Intergenic	CpG	63925	NR_131213	105500239		NR_131213		XLOC_007697	-	uncharacterized LOC105500239	ncRNA
118654	chr19	37312571	37313530	+	0	NA	non-coding (NR_138103, exon 1 of 9)	non-coding (NR_138103, exon 1 of 9)	213	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
235571	chrX	47390651	47391150	+	0	NA	intron (NM_003446, intron 1 of 3)	intron (NM_003446, intron 1 of 3)	2250	NR_003710	100124540		NR_003710	ENSG00000221459	SNORA11C	-	small nucleolar RNA, H/ACA box 11C	snoRNA
140938	chr2	237736751	237737250	+	0	NA	intron (NM_001137550, intron 10 of 23)	intron (NM_001137550, intron 10 of 23)	44795	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
102602	chr17	75907651	75908150	+	0	NA	Intergenic	AluSx|SINE|Alu	-3016	NM_032478	64978		NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3|mL38	mitochondrial ribosomal protein L38	protein-coding
120160	chr19	42239971	42240130	+	0	NA	exon (NM_019884, exon 2 of 11)	exon (NM_019884, exon 2 of 11)	2552	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
128601	chr2	60973151	60973450	+	0	NA	intron (NM_001322127, intron 4 of 16)	MER52D|LTR|ERV1	43912	NM_001322124	150962		NM_144709	ENSG00000162927	PUS10	CCDC139|DOBI|Hup10	pseudouridine synthase 10	protein-coding
7604	chr1	35268531	35269680	+	0	NA	intron (NM_001375653, intron 1 of 29)	CpG	396	NM_001350139	9202		NM_005095	ENSG00000146463	ZMYM4	CDIR|MYM|ZNF198L3|ZNF262	zinc finger MYM-type containing 4	protein-coding
190267	chr5	179276871	179277680	+	0	NA	intron (NM_014244, intron 2 of 21)	intron (NM_014244, intron 2 of 21)	68186	NM_014244	9509		NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	ADAM metallopeptidase with thrombospondin type 1 motif 2	protein-coding
187224	chr5	141040801	141041400	+	0	NA	Intergenic	Intergenic	-10274	NM_013340	29930		NM_013340	ENSG00000171815	PCDHB1	PCDH-BETA1	protocadherin beta 1	protein-coding
14083	chr1	120855151	120856200	+	0	NA	Intergenic	Intergenic	-4690	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
145851	chr20	45889871	45890500	+	0	NA	promoter-TSS (NM_001127695)	promoter-TSS (NM_001127695)	41	NM_001127695	5476		NM_000308	ENSG00000064601	CTSA	GLB2|GSL|NGBE|PPCA|PPGB	cathepsin A	protein-coding
220666	chr8	101136871	101137950	+	0	NA	Intergenic	Intergenic	32829	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
90847	chr17	2353601	2354680	+	0	NA	intron (NM_001346700, intron 2 of 22)	AluJr4|SINE|Alu	16639	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
221563	chr8	125094821	125095080	+	0	NA	intron (NM_001349485, intron 1 of 6)	AluJb|SINE|Alu	3090	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
232254	chr9	134402171	134402680	+	0	NA	intron (NM_001291920, intron 2 of 9)	intron (NM_001291920, intron 2 of 9)	-4135	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
172883	chr4	3437151	3437250	+	0	NA	intron (NM_198227, intron 15 of 15)	intron (NM_198227, intron 15 of 15)	-4768	NM_001528	3083		NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
175414	chr4	70926051	70926550	+	0	NA	intron (NM_173468, intron 1 of 5)	MIRc|SINE|MIR	23931	NM_173468	92597		NM_173468	ENSG00000173542	MOB1B	MATS2|MOB4A|MOBKL1A	MOB kinase activator 1B	protein-coding
215523	chr7	158738251	158738350	+	0	NA	intron (NM_020728, intron 18 of 21)	AluSz|SINE|Alu	-33496	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
89580	chr16	89267701	89268000	+	0	NA	3' UTR (NM_001256183, exon 13 of 13)	3' UTR (NM_001256183, exon 13 of 13)	-28278	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
103364	chr17	78118851	78119350	+	0	NA	intron (NM_001375353, intron 14 of 19)	intron (NM_001375353, intron 14 of 19)	9655	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
16655	chr1	155170021	155170280	+	0	NA	intron (NM_173852, intron 3 of 4)	AluJo|SINE|Alu	3154	NM_173852	200185		NM_173852	ENSG00000163463	KRTCAP2	KCP2	keratinocyte associated protein 2	protein-coding
82494	chr16	17368301	17369300	+	0	NA	intron (NM_022166, intron 1 of 11)	AluJr|SINE|Alu	102160	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
131512	chr2	96548901	96549100	+	0	NA	intron (NM_001319096, intron 2 of 5)	L2c|LINE|L2	11121	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
98864	chr17	48501201	48501400	+	0	NA	Intergenic	Intergenic	29711	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
113115	chr19	8300851	8301150	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	7358	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
153195	chr22	23850521	23850880	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-6003	NR_104248	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
178705	chr4	152640001	152640600	+	0	NA	intron (NM_152680, intron 6 of 6)	intron (NM_152680, intron 6 of 6)	39697	NM_152680	201799		NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding
17402	chr1	156628571	156628730	+	0	NA	Intergenic	AluY|SINE|Alu	-6722	NR_135113	101928177		NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
132057	chr2	101174021	101174280	+	0	NA	Intergenic	Intergenic	22490	NR_135594	100506286		NR_135594	ENSG00000272902	TBC1D8-AS1	-	TBC1D8 antisense RNA 1	ncRNA
198336	chr6	104671051	104671700	+	0	NA	Intergenic	L1PA7|LINE|L1	188171	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
202059	chr6	154172421	154172700	+	0	NA	intron (NM_001130700, intron 10 of 11)	L1PA6|LINE|L1	82798	NM_001285527	4988		NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor mu 1	protein-coding
128865	chr2	64022371	64022600	+	0	NA	Intergenic	AluY|SINE|Alu	-3057	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
141147	chr2	239231441	239232800	+	0	NA	intron (NM_006037, intron 3 of 26)	intron (NM_006037, intron 3 of 26)	-36663	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
60738	chr13	44434071	44434230	+	0	NA	3' UTR (NM_001243797, exon 3 of 3)	3' UTR (NM_001243797, exon 3 of 3)	2708	NM_006022	8848		NM_006022	ENSG00000102804	TSC22D1	HUCEP-2|Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
61036	chr13	48219521	48220100	+	0	NA	Intergenic	Intergenic	-13396	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
57897	chr12	123450571	123451080	+	0	NA	Intergenic	AluJb|SINE|Alu	-7314	NR_104103	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
39332	chr11	59174151	59174630	+	0	NA	intron (NM_015177, intron 1 of 8)	intron (NM_015177, intron 1 of 8)	2258	NM_015177	23220		NM_015177	ENSG00000110042	DTX4	RNF155	deltex E3 ubiquitin ligase 4	protein-coding
10983	chr1	84442321	84443400	+	0	NA	Intergenic	L1PA7|LINE|L1	34590	NM_058248	58511		NM_021233	ENSG00000137976	DNASE2B	DLAD	deoxyribonuclease 2 beta	protein-coding
167494	chr3	129177521	129178030	+	0	NA	intron (NM_001127196, intron 1 of 4)	intron (NM_001127196, intron 1 of 4)	6121	NM_001127196	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
51944	chr12	53741951	53742050	+	0	NA	Intergenic	AluSg|SINE|Alu	9835	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
109938	chr19	1323251	1323550	+	0	NA	Intergenic	Intergenic	-31559	NM_001369789	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
49767	chr12	31803151	31803700	+	0	NA	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-11127	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
60569	chr13	41563251	41563550	+	0	NA	Intergenic	Intergenic	4995	NR_049803	100847026		NR_049803	ENSG00000284584	MIR5006	-	microRNA 5006	ncRNA
99231	chr17	49674051	49674550	+	0	NA	intron (NM_001007227, intron 1 of 10)	L1M2|LINE|L1	3797	NM_001007228	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
81696	chr16	11235001	11235930	+	0	NA	Intergenic	AluSz6|SINE|Alu	20717	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
108228	chr18	63197171	63198050	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	122159	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
138582	chr2	207769211	207771000	+	0	NA	promoter-TSS (NM_003468)	promoter-TSS (NM_003468)	-199	NM_003468	7855		NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5|MCOPCB11	frizzled class receptor 5	protein-coding
123382	chr19	53909071	53909730	+	0	NA	5' UTR (NM_001384801, exon 1 of 5)	5' UTR (NM_001384801, exon 1 of 5)	122	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
28153	chr10	43461671	43462300	+	0	NA	intron (NM_001355446, intron 2 of 4)	intron (NM_001355446, intron 2 of 4)	24874	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
119876	chr19	41513671	41514230	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-13301	NR_040109	100505495		NR_040109	ENSG00000267107	PCAT19	LINC01190	prostate cancer associated transcript 19	ncRNA
118753	chr19	38359951	38360830	+	0	NA	intron (NM_001330496, intron 13 of 27)	intron (NM_001330496, intron 13 of 27)	-14181	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
145965	chr20	46312601	46313080	+	0	NA	Intergenic	CpG	-4342	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
146012	chr20	46685851	46686180	+	0	NA	3' UTR (NM_033550, exon 2 of 2)	3' UTR (NM_033550, exon 2 of 2)	-1530	NM_001011554	64849		NM_022829	ENSG00000158296	SLC13A3	ARLIAK|NADC3|NaC3|SDCT2	solute carrier family 13 member 3	protein-coding
26299	chr10	14971821	14972180	+	0	NA	intron (NM_001080836, intron 2 of 2)	intron (NM_001080836, intron 2 of 2)	12612	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
27762	chr10	35328321	35328680	+	0	NA	intron (NM_181698, intron 3 of 11)	intron (NM_181698, intron 3 of 11)	-8009	NM_145012	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
77658	chr15	85533771	85534480	+	0	NA	intron (NM_007200, intron 4 of 36)	intron (NM_007200, intron 4 of 36)	-85825	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
24020	chr1	235266021	235266530	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-60941	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
184627	chr5	107296701	107296900	+	0	NA	Intergenic	Intergenic	-285786	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
196642	chr6	44288801	44289380	+	0	NA	intron (NM_182539, intron 1 of 4)	AluSq2|SINE|Alu	8608	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
156754	chr22	41836021	41836350	+	0	NA	intron (NR_103834, intron 1 of 21)	intron (NR_103834, intron 1 of 21)	-1520	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
192135	chr6	16762801	16763500	+	0	NA	non-coding (NR_136240, exon 3 of 3)	non-coding (NR_136240, exon 3 of 3)	-1660	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
33394	chr10	117830821	117831280	+	0	NA	Intergenic	Intergenic	-215771	NR_026939	255082		NM_178816	ENSG00000177640	CASC2	C10orf5	cancer susceptibility 2	ncRNA
11958	chr1	93911301	93911500	+	0	NA	Intergenic	L1PA6|LINE|L1	-1802	NM_001308253	2730		NM_002061	ENSG00000023909	GCLM	GLCLR	glutamate-cysteine ligase modifier subunit	protein-coding
198517	chr6	106521631	106522080	+	0	NA	intron (NM_001371242, intron 4 of 21)	AluSx4|SINE|Alu	10000	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
229599	chr9	123544151	123544250	+	0	NA	intron (NM_024820, intron 13 of 20)	intron (NM_024820, intron 13 of 20)	-58578	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
157144	chr22	42852801	42853000	+	0	NA	intron (NM_001142293, intron 1 of 14)	AluSx1|SINE|Alu	4373	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
56911	chr12	120388971	120389400	+	0	NA	Intergenic	Intergenic	-20021	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
134102	chr2	132267551	132267850	+	0	NA	Intergenic	Intergenic	-9667	NR_152415	554226		NM_001024655	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B like	protein-coding
161767	chr3	44913871	44914230	+	0	NA	3' UTR (NM_003241, exon 14 of 14)	3' UTR (NM_003241, exon 14 of 14)	39442	NM_003241	7047		NM_003241	ENSG00000163810	TGM4	TGP|hTGP	transglutaminase 4	protein-coding
219824	chr8	81683721	81684230	+	0	NA	intron (NM_001144879, intron 1 of 7)	MER39|LTR|ERV1	2350	NM_005536	3612		NM_005536	ENSG00000133731	IMPA1	IMP|IMPA|MRT59	inositol monophosphatase 1	protein-coding
139246	chr2	219382621	219383080	+	0	NA	intron (NR_134970, intron 8 of 12)	L2c|LINE|L2	4512	NM_001319118	23549		NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
220283	chr8	97979151	97979500	+	0	NA	intron (NM_001317748, intron 6 of 17)	intron (NM_001317748, intron 6 of 17)	62892	NR_002581	26775		NR_002581	ENSG00000207067	SNORA72	RNU72|U72	small nucleolar RNA, H/ACA box 72	snoRNA
92305	chr17	8119601	8120000	+	0	NA	promoter-TSS (NM_001165960)	promoter-TSS (NM_001165960)	-884	NM_001165960	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
74328	chr15	58475551	58476000	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	22960	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
91333	chr17	4433321	4434180	+	0	NA	promoter-TSS (NM_182538)	promoter-TSS (NM_182538)	-190	NM_001320449	201305		NM_182538	ENSG00000182557	SPNS3	SLC62A3|SLC63A3	SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)	protein-coding
163445	chr3	50599351	50599650	+	0	NA	Intergenic	Intergenic	12274	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
83737	chr16	28613521	28614250	+	0	NA	intron (NM_177536, intron 2 of 5)	CpG	-3841	NM_177529	6817		NM_001055	ENSG00000196502	SULT1A1	HAST1/HAST2|P-PST|P-PST 1|PST|ST1A1|ST1A3|STP|STP1|TSPST1|ts-PST	sulfotransferase family 1A member 1	protein-coding
72913	chr15	40364301	40364500	+	0	NA	intron (NM_033510, intron 3 of 7)	intron (NM_033510, intron 3 of 7)	6181	NM_033510	85455		NM_033510	ENSG00000140323	DISP2	C15orf36|DISPB|HsT16908|LINC00594	dispatched RND transporter family member 2	protein-coding
191587	chr6	12032371	12032530	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	20138	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
171369	chr3	196078471	196079230	+	0	NA	intron (NM_001313966, intron 1 of 16)	AluSq2|SINE|Alu	3240	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
206592	chr7	35726551	35726850	+	0	NA	Intergenic	Intergenic	10263	NR_108082	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
220912	chr8	106760101	106760400	+	0	NA	3' UTR (NM_139166, exon 2 of 2)	3' UTR (NM_139166, exon 2 of 2)	9994	NM_139166	137735		NM_139166	ENSG00000174429	ABRA	STARS	actin binding Rho activating protein	protein-coding
151175	chr21	44978571	44978730	+	0	NA	Intergenic	Intergenic	15436	NR_033840	727699		NR_033840	ENSG00000234880	LINC00163	C21orf134|NCRNA00163|NLC1-A|NLC1A	long intergenic non-protein coding RNA 163	ncRNA
154456	chr22	35411201	35411480	+	0	NA	intron (NM_006739, intron 7 of 16)	intron (NM_006739, intron 7 of 16)	11200	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
54313	chr12	89506751	89507050	+	0	NA	intron (NM_172240, intron 2 of 11)	LTR30|LTR|ERV1	17896	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
227611	chr9	92758621	92758880	+	0	NA	intron (NM_001003800, intron 1 of 6)	AluSp|SINE|Alu	6083	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
198760	chr6	108627821	108628280	+	0	NA	intron (NM_201559, intron 2 of 3)	MIR|SINE|MIR	67133	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
47625	chr12	6142751	6143250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18330	NM_000552	7450		NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
130963	chr2	87533351	87533780	+	0	NA	Intergenic	Intergenic	63615	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
75300	chr15	65216971	65217130	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-5577	NM_003613	8483		NM_003613	ENSG00000138615	CILP	CILP-1|CILP1|HsT18872	cartilage intermediate layer protein	protein-coding
20920	chr1	202190151	202190600	+	0	NA	TTS (NR_002930)	TTS (NR_002930)	-3615	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
93564	chr17	19088801	19089400	+	0	NA	promoter-TSS (NR_160285)	promoter-TSS (NR_160285)	-343	NR_164158	102724624		NR_164158		LOC102724624	-	uncharacterized protein ENSP00000382042-like	ncRNA
97766	chr17	44500271	44500830	+	0	NA	intron (NM_001304940, intron 1 of 9)	intron (NM_001304940, intron 1 of 9)	2856	NM_001002909	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
14756	chr1	146012751	146013550	+	0	NA	Intergenic	Intergenic	8585	NM_213652	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
156653	chr22	41635301	41635500	+	0	NA	intron (NM_001288977, intron 3 of 12)	MIRc|SINE|MIR	14105	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
32500	chr10	102718101	102718300	+	0	NA	intron (NM_001350989, intron 2 of 12)	intron (NM_001350989, intron 2 of 12)	3564	NM_178858	118980		NM_178858	ENSG00000156398	SFXN2	SLC56A2	sideroflexin 2	protein-coding
76192	chr15	73513901	73514130	+	0	NA	intron (NM_001348772, intron 2 of 4)	L1PA2|LINE|L1	55528	NR_103844	101241892		NR_103844	ENSG00000281183	NPTN-IT1	lncRNA-LET	NPTN intronic transcript 1	ncRNA
88361	chr16	84579801	84580280	+	0	NA	intron (NM_021149, intron 3 of 3)	intron (NM_021149, intron 3 of 3)	38038	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
168580	chr3	149016101	149016300	+	0	NA	intron (NM_001184721, intron 5 of 5)	AluY|SINE|Alu	24660	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
19343	chr1	173842321	173842900	+	0	NA	intron (NM_018122, intron 11 of 16)	intron (NM_018122, intron 11 of 16)	17937	NM_001365213	55157		NM_018122	ENSG00000117593	DARS2	ASPRS|LBSL|MT-ASPRS|mtAspRS	aspartyl-tRNA synthetase 2, mitochondrial	protein-coding
167006	chr3	125990151	125991050	+	0	NA	promoter-TSS (NM_001385064)	promoter-TSS (NM_001385064)	-63	NM_001385064	200810		NM_001015050	ENSG00000291096	ALG1L1P	ALG1L|ALG1L1	ALG1 like 1, pseudogene	pseudo
52928	chr12	57264571	57264730	+	0	NA	intron (NM_001351209, intron 19 of 23)	AluJr|SINE|Alu	-13463	NM_001286257	246329		NM_145064	ENSG00000185482	STAC3	CMYP13|MYPBB|NAM	SH3 and cysteine rich domain 3	protein-coding
185582	chr5	131391271	131391980	+	0	NA	3' UTR (NM_001375635, exon 5 of 5)	3' UTR (NM_001375635, exon 5 of 5)	127572	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
373	chr1	1032671	1034900	+	0	NA	promoter-TSS (NM_001364727)	promoter-TSS (NM_001364727)	-208	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
217914	chr8	37904501	37904900	+	0	NA	Intergenic	Intergenic	-5203	NM_025151	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
25008	chr10	3227451	3228580	+	0	NA	Intergenic	Intergenic	-20999	NR_164118	105376353		NR_164118		LOC105376353	-	mucin-5AC-like	ncRNA
44355	chr11	102448551	102449300	+	0	NA	intron (NM_052932, intron 1 of 4)	intron (NM_052932, intron 1 of 4)	3840	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
40681	chr11	64765451	64766880	+	0	NA	intron (NM_201995, intron 12 of 13)	CpG-4420	-5450	NM_001164716	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
120019	chr19	41942801	41943100	+	0	NA	Intergenic	Intergenic	14130	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
198491	chr6	106327471	106327630	+	0	NA	Intergenic	AluJo|SINE|Alu	-1730	NM_001286107	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
156903	chr22	42215951	42216450	+	0	NA	intron (NM_005650, intron 1 of 5)	AluJo|SINE|Alu	-53553	NR_036498	388906		NR_036498		OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
203133	chr6	166936501	166936900	+	0	NA	intron (NM_003730, intron 6 of 8)	MSTB1|LTR|ERVL-MaLR	19850	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
16214	chr1	153890651	153890950	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	32172	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
168669	chr3	150544721	150544980	+	0	NA	intron (NM_014445, intron 2 of 2)	intron (NM_014445, intron 2 of 2)	1646	NM_014445	27230		NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding
145357	chr20	41149001	41149200	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-11100	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
161510	chr3	42579001	42579200	+	0	NA	intron (NM_001201572, intron 1 of 6)	AluSp|SINE|Alu	-2740	NM_016305	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
173348	chr4	7784921	7785180	+	0	NA	intron (NM_001134647, intron 12 of 17)	intron (NM_001134647, intron 12 of 17)	30960	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
214128	chr7	144236101	144236580	+	0	NA	intron (NR_126022, intron 2 of 4).3	AluJr4|SINE|Alu	-3497	NM_001001802	402317		NM_001001802	ENSG00000212807	OR2A42	-	olfactory receptor family 2 subfamily A member 42	protein-coding
119849	chr19	41409701	41409900	+	0	NA	intron (NM_001164783, intron 1 of 8)	AluSz|SINE|Alu	11982	NM_000709	593		NM_000709	ENSG00000248098	BCKDHA	BCKDE1A|MSU|MSUD1|MSUD1A|OVD1A	branched chain keto acid dehydrogenase E1 subunit alpha	protein-coding
74964	chr15	63826271	63827650	+	0	NA	intron (NM_003922, intron 1 of 77)	L1MC4a|LINE|L1	6988	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
133686	chr2	127093621	127093880	+	0	NA	intron (NM_139345, intron 1 of 15)	MER39|LTR|ERV1	-9200	NM_001320642	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
91654	chr17	5503671	5503830	+	0	NA	intron (NM_001033053, intron 15 of 15)	intron (NM_001033053, intron 15 of 15)	-2744	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
155782	chr22	39253221	39254080	+	0	NA	Intergenic	Intergenic	-8668	NM_002608	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
233180	chr9	137193651	137194050	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	5174	NM_003731	8636		NM_003731	ENSG00000176101	SSNA1	N14|NA-14|NA14	SS nuclear autoantigen 1	protein-coding
45011	chr11	117005601	117005800	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	92728	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
79901	chr16	1611601	1613680	+	0	NA	promoter-TSS (NM_014714)	promoter-TSS (NM_014714)	280	NM_020825	57585		NM_020825	ENSG00000007545	CRAMP1	CRAMP1L|HN1L|TCE4	cramped chromatin regulator homolog 1	protein-coding
31087	chr10	89247221	89247500	+	0	NA	intron (NM_000235, intron 2 of 9)	AluSx|SINE|Alu	4415	NM_000235	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
41019	chr11	65434921	65435400	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	-9298	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
152224	chr22	20146921	20147800	+	0	NA	3' UTR (NM_013373, exon 11 of 11)	3' UTR (NM_013373, exon 11 of 11)	3695	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
44406	chr11	103601271	103601440	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-248551	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
102420	chr17	75632501	75633280	+	0	NA	promoter-TSS (NM_001162995)	promoter-TSS (NM_001162995)	-544	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
1344	chr1	2480421	2480680	+	0	NA	intron (NM_001303013, intron 4 of 21)	intron (NM_001303013, intron 4 of 21)	4235	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
53505	chr12	66688851	66689150	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-9924	NM_001178074	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
126926	chr2	32947621	32947950	+	0	NA	exon (NM_206943, exon 1 of 34)	exon (NM_206943, exon 1 of 34)	832	NM_206943	4052		NM_000627	ENSG00000049323	LTBP1	ARCL2E	latent transforming growth factor beta binding protein 1	protein-coding
22452	chr1	220887601	220887800	+	0	NA	Intergenic	CpG	-7560	NR_046901	100873924		NR_046901	ENSG00000257551	HLX-AS1	-	HLX antisense RNA 1	ncRNA
189900	chr5	177349971	177350350	+	0	NA	intron (NM_006816, intron 2 of 7)	intron (NM_006816, intron 2 of 7)	1508	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
79372	chr16	643551	643850	+	0	NA	intron (NR_138611, intron 1 of 3)	AluSc8|SINE|Alu	646	NR_138611	84331		NM_032371	ENSG00000172366	MCRIP2	C16orf14|FAM195A|c349E10.1	MAPK regulated corepressor interacting protein 2	protein-coding
122015	chr19	48604721	48604980	+	0	NA	intron (NM_017708, intron 5 of 6)	AluSg|SINE|Alu	-1892	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
68243	chr14	76976071	76976230	+	0	NA	Intergenic	Intergenic	16512	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
124884	chr2	8337251	8337750	+	0	NA	Intergenic	Intergenic	-9081	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
78047	chr15	90071021	90071680	+	0	NA	intron (NM_198526, intron 2 of 4)	intron (NM_198526, intron 2 of 4)	10857	NR_146321	109729181		NR_146321	ENSG00000259291	ZNF710-AS1	-	ZNF710 antisense RNA 1	ncRNA
22234	chr1	212603251	212603750	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	-5261	NM_001674	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
60820	chr13	45365201	45365600	+	0	NA	intron (NR_024458, intron 3 of 10)	intron (NR_024458, intron 3 of 10)	24055	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
169218	chr3	157103301	157104000	+	0	NA	intron (NR_034007, intron 1 of 3)	intron (NR_034007, intron 1 of 3)	13769	NR_034008	100498859		NR_034008		LINC00881	LIPTER	long intergenic non-protein coding RNA 881	ncRNA
120313	chr19	43500751	43501050	+	0	NA	intron (NM_198850, intron 4 of 15)	AluJr|SINE|Alu	3933	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
235820	chrX	49270951	49271130	+	0	NA	intron (NM_033215, intron 1 of 3)	intron (NM_033215, intron 1 of 3)	1247	NM_033215	89801		NM_033215	ENSG00000049769	PPP1R3F	HB2E|LL0XNC01-7P3.1|R3F	protein phosphatase 1 regulatory subunit 3F	protein-coding
117930	chr19	33124751	33125250	+	0	NA	intron (NR_135270, intron 18 of 20)	intron (NR_135270, intron 18 of 20)	-7114	NR_135565	126248		NM_173479	ENSG00000166359	WDR88	PQWD	WD repeat domain 88	protein-coding
189650	chr5	176199721	176199980	+	0	NA	promoter-TSS (NR_036494)	promoter-TSS (NR_036494)	-555	NR_036494	643201		NR_036494	ENSG00000248596	CEP192P1	-	CEP192 pseudogene 1	pseudo
18749	chr1	167488401	167488980	+	0	NA	intron (NM_198053, intron 1 of 7)	MER31A|LTR|ERV1	29839	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
36859	chr11	10413321	10413780	+	0	NA	intron (NR_103765, intron 3 of 3)	MER1B|DNA|hAT-Charlie	-36771	NM_001172431	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
134474	chr2	143251851	143252750	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	122881	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
230362	chr9	128063871	128064230	+	0	NA	intron (NM_197956, intron 1 of 1)	intron (NM_197956, intron 1 of 1)	3270	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
70064	chr14	100142701	100143300	+	0	NA	TTS (NM_206918)	TTS (NM_206918)	16645	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
176538	chr4	98259471	98259630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-1834	NM_001100429	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
191806	chr6	14452401	14453500	+	0	NA	Intergenic	Intergenic	-167496	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
92456	chr17	8477401	8478300	+	0	NA	intron (NM_005964, intron 39 of 40)	intron (NM_005964, intron 39 of 40)	41966	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
47272	chr12	1589001	1589900	+	0	NA	intron (NM_152441, intron 1 of 1)	(A)n|Simple_repeat|Simple_repeat	5131	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
190139	chr5	178094321	178094780	+	0	NA	Intergenic	L2|LINE|L2	-18982	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
29757	chr10	72220271	72221030	+	0	NA	intron (NM_001242546, intron 2 of 4)	AluJo|SINE|Alu	-3516	NM_001369099	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
186554	chr5	138462051	138462150	+	0	NA	Intergenic	Intergenic	-3379	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
171063	chr3	195424571	195425130	+	0	NA	intron (NM_012287, intron 1 of 22)	AluJr|SINE|Alu	18170	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
125291	chr2	10520371	10520800	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	70857	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
96050	chr17	39465771	39465930	+	0	NA	intron (NM_016507, intron 1 of 13)	intron (NM_016507, intron 1 of 13)	4364	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
193967	chr6	31702721	31703980	+	0	NA	promoter-TSS (NM_021160).3	promoter-TSS (NM_021160).3	-26	NR_033489	7920		NM_021160	ENSG00000204427	ABHD16A	BAT5|D6S82E|NG26|PP199|SPG86|hBAT5	abhydrolase domain containing 16A, phospholipase	protein-coding
143238	chr20	24994321	24995400	+	0	NA	Intergenic	Intergenic	-2109	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
209026	chr7	74453401	74454680	+	0	NA	5' UTR (NM_005685, exon 1 of 27)	5' UTR (NM_005685, exon 1 of 27)	134	NM_005685	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
144758	chr20	36610601	36612000	+	0	NA	intron (NM_001199534, intron 3 of 3)	intron (NM_001199534, intron 3 of 3)	5521	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
48163	chr12	7937951	7939100	+	0	NA	Intergenic	Charlie5|DNA|hAT-Charlie	-2338	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
136776	chr2	181460901	181461600	+	0	NA	intron (NM_000885, intron 2 of 27)	intron (NM_000885, intron 2 of 27)	3864	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
177181	chr4	108160951	108161780	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	5432	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
129188	chr2	68188871	68189380	+	0	NA	intron (NM_000945, intron 2 of 5)	(TTTCAT)n|Simple_repeat|Simple_repeat	31237	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
52364	chr12	55652001	55652600	+	0	NA	Intergenic	THE1C-int|LTR|ERVL-MaLR	15408	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
73145	chr15	41398821	41399530	+	0	NA	intron (NR_045620, intron 1 of 5)	AluSx|SINE|Alu	3321	NR_045620	51103		NM_016013	ENSG00000137806	NDUFAF1	CGI-65|CGI65|CIA30|MC1DN11	NADH:ubiquinone oxidoreductase complex assembly factor 1	protein-coding
16722	chr1	155247021	155247530	+	0	NA	TTS (NM_001267608)	TTS (NM_001267608)	-2648	NM_001005742	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
203716	chr7	1065421	1066650	+	0	NA	intron (NM_032350, intron 2 of 4)	CpG	10665	NM_001303474	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
104862	chr17	81850601	81850800	+	0	NA	intron (NM_000918, intron 4 of 10)	AluSp|SINE|Alu	9835	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
17254	chr1	156370621	156370880	+	0	NA	intron (NM_020407, intron 1 of 9)	MIR1_Amn|SINE|MIR	1539	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
39971	chr11	62593571	62594780	+	0	NA	intron (NM_001330292, intron 17 of 17)	intron (NM_001330292, intron 17 of 17)	-2652	NM_022830	64852		NM_022830	ENSG00000149016	TUT1	PAPD2|RBM21|STARPAP|TENT1|TUTase|URLC6	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding
171110	chr3	195509251	195509950	+	0	NA	Intergenic	AluJr|SINE|Alu	33725	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
99201	chr17	49523601	49524250	+	0	NA	intron (NR_103773, intron 1 of 2)	intron (NR_103773, intron 1 of 2)	13108	NR_106751	102465141		NR_106751	ENSG00000277478	MIR6165	hsa-mir-6165	microRNA 6165	ncRNA
110424	chr19	1968401	1968600	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	-13951	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
56623	chr12	118307651	118307750	+	0	NA	intron (NM_001346487, intron 1 of 20)	intron (NM_001346487, intron 1 of 20)	52005	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
123082	chr19	51391051	51391150	+	0	NA	promoter-TSS (NM_001193623)	promoter-TSS (NM_001193623)	-509	NR_126530	147646		NM_001193623	ENSG00000262874	C19orf84	-	chromosome 19 open reading frame 84	protein-coding
39302	chr11	58605821	58606180	+	0	NA	intron (NM_053023, intron 2 of 10)	L1MB5|LINE|L1	-16665	NM_000614	1270		NM_000614	ENSG00000242689	CNTF	HCNTF	ciliary neurotrophic factor	protein-coding
128733	chr2	61884151	61884250	+	0	NA	intron (NM_006430, intron 2 of 13)	intron (NM_006430, intron 2 of 13)	-4191	NM_001371765	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
94264	chr17	28696251	28697150	+	0	NA	intron (NM_003170, intron 29 of 36)	AluJo|SINE|Alu	13404	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
178180	chr4	142384701	142385480	+	0	NA	intron (NR_169599, intron 3 of 22)	L1PA13|LINE|L1	18043	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
38350	chr11	44577021	44577680	+	0	NA	intron (NM_002231, intron 1 of 9)	intron (NM_002231, intron 1 of 9)	11687	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
60708	chr13	44088751	44089480	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-21434	NR_104065	101929212		NR_104064	ENSG00000227258	SMIM2-AS1	C13orf44-AS1|C3orf81-AS1	SMIM2 antisense RNA 1	ncRNA
133269	chr2	113498051	113498350	+	0	NA	promoter-TSS (NM_012184)	promoter-TSS (NM_012184)	-884	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
61006	chr13	48043751	48044450	+	0	NA	intron (NR_136687, intron 2 of 4)	intron (NR_136687, intron 2 of 4)	6374	NM_018283	55270		NM_018283	ENSG00000136159	NUDT15	MTH2|NUDT15D	nudix hydrolase 15	protein-coding
203267	chr6	169700401	169700630	+	0	NA	intron (NR_146876, intron 1 of 15)	MLT1D|LTR|ERVL-MaLR	1514	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
202359	chr6	157755471	157756100	+	0	NA	Intergenic	Intergenic	-67461	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
198036	chr6	90169551	90169650	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	127243	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
132357	chr2	105750901	105752030	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	6402	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
48481	chr12	9794621	9795080	+	0	NA	Intergenic	L2a|LINE|L2	-5202	NR_159359	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
21314	chr1	204512201	204512430	+	0	NA	Intergenic	AluSg|SINE|Alu	-4064	NM_001204172	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
17432	chr1	156664601	156665650	+	0	NA	Intergenic	Intergenic	12282	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
64419	chr14	24181951	24182050	+	0	NA	non-coding (NR_051979, exon 26 of 30)	non-coding (NR_051979, exon 26 of 30)	6816	NM_024658	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
72621	chr15	38085251	38085750	+	0	NA	Intergenic	Intergenic	-12510	NR_147199	107984773		NR_147199	ENSG00000236914	LINC01852	-	long intergenic non-protein coding RNA 1852	ncRNA
115544	chr19	15473551	15474050	+	0	NA	intron (NM_001363546, intron 2 of 3)	L1PB4|LINE|L1	5701	NM_052890	114770		NM_052890	ENSG00000161031	PGLYRP2	HMFT0141|PGLYRPL|PGRP-L|PGRPL|TAGL-like|tagL|tagL-alpha|tagl-beta	peptidoglycan recognition protein 2	protein-coding
194472	chr6	33207651	33208930	+	0	NA	promoter-TSS (NM_002931).4	promoter-TSS (NM_002931).4	-210	NM_002931	6015		NM_002931	ENSG00000204227	RING1	RING1A|RNF1	ring finger protein 1	protein-coding
11399	chr1	89692551	89693100	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	59705	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
15391	chr1	150213051	150214550	+	0	NA	Intergenic	Intergenic	20878	NM_001136479	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
103064	chr17	77248451	77248750	+	0	NA	Intergenic	Intergenic	-32899	NM_001293695	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
128634	chr2	61371101	61371700	+	0	NA	intron (NM_014709, intron 8 of 79)	Tigger3b|DNA|TcMar-Tigger	45977	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
153818	chr22	29729571	29729730	+	0	NA	3' UTR (NM_182527, exon 5 of 5)	3' UTR (NM_182527, exon 5 of 5)	9647	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
127422	chr2	42130221	42130680	+	0	NA	Intergenic	Intergenic	-38903	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
223989	chr9	2066921	2067200	+	0	NA	intron (NM_003070, intron 9 of 33)	intron (NM_003070, intron 9 of 33)	45115	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
113898	chr19	10685671	10687080	+	0	NA	TTS (NM_001137673)	TTS (NM_001137673)	-15064	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
39748	chr11	61830471	61830630	+	0	NA	intron (NM_004265, intron 1 of 11)	intron (NM_004265, intron 1 of 11)	2250	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
183430	chr5	78467951	78468050	+	0	NA	intron (NM_004866, intron 8 of 8)	intron (NM_004866, intron 8 of 8)	107383	NM_004866	9522		NM_004866	ENSG00000085365	SCAMP1	SCAMP|SCAMP37	secretory carrier membrane protein 1	protein-coding
18876	chr1	168134751	168135050	+	0	NA	intron (NM_153832, intron 1 of 7)	intron (NM_153832, intron 1 of 7)	1807	NM_001267613	23432		NM_007369	ENSG00000143147	GPR161	RE2	G protein-coupled receptor 161	protein-coding
170885	chr3	193461671	193461900	+	0	NA	intron (NM_032279, intron 13 of 29)	intron (NM_032279, intron 13 of 29)	-83032	NM_198505	344905		NM_198505	ENSG00000187527	ATP13A5	-	ATPase 13A5	protein-coding
106627	chr18	22391451	22392150	+	0	NA	Intergenic	Intergenic	26115	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
236629	chrX	74577101	74577500	+	0	NA	Intergenic	L2a|LINE|L2	37324	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
98555	chr17	47693121	47694400	+	0	NA	Intergenic	CpG	-1504	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
33482	chr10	119079871	119081600	+	0	NA	promoter-TSS (NM_003750)	promoter-TSS (NM_003750)	82	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
131248	chr2	96012071	96012430	+	0	NA	intron (NR_003698, intron 1 of 3)	intron (NR_003698, intron 1 of 3)	1699	NR_003698	729234		NR_003698		FAHD2CP	-	fumarylacetoacetate hydrolase domain containing 2C, pseudogene	pseudo
118931	chr19	38743701	38743900	+	0	NA	intron (NM_144691, intron 1 of 20)	MSR1|Satellite|Satellite	674	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
226338	chr9	69439821	69440280	+	0	NA	intron (NM_001163, intron 11 of 12)	L1PA4|LINE|L1	110725	NM_004816	9413		NM_004816	ENSG00000135063	ENTREP1	C9orf61|ENTREP|FAM189A2|X123	endosomal transmembrane epsin interactor 1	protein-coding
179093	chr4	168477971	168478300	+	0	NA	intron (NM_001378070, intron 1 of 5)	MLT1J2-int|LTR|ERVL-MaLR	2357	NM_001345927	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
57951	chr12	123743071	123743330	+	0	NA	intron (NM_012463, intron 9 of 19)	intron (NM_012463, intron 9 of 19)	-19101	NM_001372106	196385		NM_207437	ENSG00000197653	DNAH10	SPGF56	dynein axonemal heavy chain 10	protein-coding
194565	chr6	33405351	33406630	+	0	NA	intron (NM_002263, intron 7 of 10).3	intron (NM_002263, intron 7 of 10).3	-5024	NR_027692	5252		NM_002636	ENSG00000112511	PHF1	MTF2L2|PCL1|PHF2|TDRD19C|hPHF1	PHD finger protein 1	protein-coding
119221	chr19	39460451	39460750	+	0	NA	intron (NM_001111020, intron 10 of 29)	AluSz|SINE|Alu	-7622	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
212445	chr7	128405171	128406500	+	0	NA	exon (NM_001142575, exon 1 of 13)	exon (NM_001142575, exon 1 of 13)	160	NM_001142575	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
60342	chr13	40776421	40777900	+	0	NA	Intergenic	Intergenic	-5970	NM_005830	10240		NM_005830	ENSG00000102738	MRPS31	IMOGN38|MRP-S31|S31mt|mS31	mitochondrial ribosomal protein S31	protein-coding
139273	chr2	219483251	219483580	+	0	NA	exon (NM_005876, exon 30 of 41)	exon (NM_005876, exon 30 of 41)	-12940	NM_001286811	100996693		NM_001286811	ENSG00000286095	SPEGNB	-	SPEG neighbor	protein-coding
164785	chr3	69235671	69236250	+	0	NA	intron (NM_015123, intron 7 of 22)	intron (NM_015123, intron 7 of 22)	-113365	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
124311	chr19	58021851	58022250	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	-11975	NM_182572	284312		NM_182572	ENSG00000152467	ZSCAN1	MZF-1|ZNF915	zinc finger and SCAN domain containing 1	protein-coding
216058	chr8	10237701	10237900	+	0	NA	intron (NM_001135670, intron 2 of 4).2	L2a|LINE|L2	142149	NM_001199729	4482		NM_012331	ENSG00000175806	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
76618	chr15	75449871	75451300	+	0	NA	intron (NM_001145357, intron 1 of 20)	intron (NM_001145357, intron 1 of 20)	1105	NM_015477	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
19990	chr1	185153821	185154300	+	0	NA	intron (NM_001202423, intron 1 of 14)	L2a|LINE|L2	2893	NM_030934	81627		NM_030934	ENSG00000121486	TRMT1L	C1orf25|MST070|MSTP070|TRM1L|bG120K12.3	tRNA methyltransferase 1 like	protein-coding
70157	chr14	100298101	100298300	+	0	NA	intron (NM_001352820, intron 3 of 6)	intron (NM_001352820, intron 3 of 6)	8244	NM_001291814	123096		NM_152333	ENSG00000197119	SLC25A29	C14orf69|CACL|ORNT3	solute carrier family 25 member 29	protein-coding
167581	chr3	129553651	129554150	+	0	NA	Intergenic	L1ME4a|LINE|L1	5515	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
199808	chr6	127460571	127460930	+	0	NA	intron (NM_001012279, intron 7 of 11)	MIRb|SINE|MIR	-1361	NM_014702	9729		NM_014702	ENSG00000189367	KIAA0408	-	KIAA0408	protein-coding
134961	chr2	152004351	152005050	+	0	NA	intron (NM_000726, intron 2 of 13)	MamRTE1|LINE|RTE-BovB	-30722	NM_001330115	785		NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
111657	chr19	4217771	4217930	+	0	NA	exon (NM_133475, exon 18 of 22)	exon (NM_133475, exon 18 of 22)	-11673	NM_005755	10148		NM_005755	ENSG00000105246	EBI3	IL-27B|IL27B|IL35B	Epstein-Barr virus induced 3	protein-coding
214712	chr7	151006601	151006800	+	0	NA	intron (NM_000603, intron 15 of 26)	intron (NM_000603, intron 15 of 26)	12896	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
140374	chr2	233049301	233050030	+	0	NA	Intergenic	Intergenic	-10677	NM_005541	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
113866	chr19	10658671	10659800	+	0	NA	intron (NM_153464, intron 1 of 17)	AluSx1|SINE|Alu	4889	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
6127	chr1	27354201	27354650	+	0	NA	TTS (NM_001297609)	TTS (NM_001297609)	12403	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
128116	chr2	48312751	48313490	+	0	NA	Intergenic	Intergenic	-1179	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
172889	chr4	3444921	3446050	+	0	NA	intron (NM_001528, intron 9 of 13)	MIRc|SINE|MIR	3517	NM_001297439	3083		NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
221569	chr8	125151801	125152280	+	0	NA	intron (NM_173685, intron 4 of 7)	intron (NM_173685, intron 4 of 7)	60180	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
193055	chr6	28643451	28643750	+	0	NA	Intergenic	Intergenic	10875	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
197761	chr6	87240071	87240300	+	0	NA	intron (NM_015021, intron 5 of 7)	SVA_A|Retroposon|SVA	-82403	NM_020425	57150		NM_020425	ENSG00000111850	SMIM8	C6orf162|dJ102H19.2	small integral membrane protein 8	protein-coding
228610	chr9	105355821	105356190	+	0	NA	intron (NM_001330731, intron 5 of 15)	intron (NM_001330731, intron 5 of 15)	-92029	NM_001287192	83856		NM_031919	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1 like	protein-coding
97010	chr17	42296451	42296550	+	0	NA	intron (NM_001288719, intron 4 of 17)	intron (NM_001288719, intron 4 of 17)	8444	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
34193	chr10	128219451	128219550	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-66450	NR_120619	101927381		NR_120619	ENSG00000280953	LINC01163	TCONS_00017722	long intergenic non-protein coding RNA 1163	ncRNA
1093	chr1	2017571	2017930	+	0	NA	Intergenic	Intergenic	-1595	NM_000815	2563		NM_000815	ENSG00000187730	GABRD	EIG10|EJM7|GABAARdelta|GEFSP5	gamma-aminobutyric acid type A receptor subunit delta	protein-coding
215529	chr7	158768601	158769200	+	0	NA	intron (NM_020728, intron 7 of 21)	intron (NM_020728, intron 7 of 21)	60609	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
19965	chr1	184904971	184905800	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	69123	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
197490	chr6	75608251	75608550	+	0	NA	intron (NM_015571, intron 1 of 23)	AluJo|SINE|Alu	6520	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
186862	chr5	139476921	139477980	+	0	NA	exon (NM_001367258, exon 6 of 7)	exon (NM_001367258, exon 6 of 7)	5308	NM_001367258	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
201028	chr6	141554101	141554700	+	0	NA	Intergenic	AluSg|SINE|Alu	-578759	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
169797	chr3	175787251	175787580	+	0	NA	intron (NM_207015, intron 13 of 13)	L1PA2|LINE|L1	-11082	NR_046714	100874245		NR_046714		NAALADL2-AS1	-	NAALADL2 antisense RNA 1	ncRNA
139540	chr2	224650821	224651100	+	0	NA	Intergenic	Intergenic	-65563	NM_001257197	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
92213	chr17	7861421	7861680	+	0	NA	3' UTR (NM_001330110, exon 4 of 4)	3' UTR (NM_001330110, exon 4 of 4)	3547	NM_001330110	124637		NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
111907	chr19	4685501	4685700	+	0	NA	non-coding (NR_164163, exon 3 of 3)	non-coding (NR_164163, exon 3 of 3)	6318	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
230178	chr9	127789501	127790100	+	0	NA	3' UTR (NM_001261, exon 7 of 7)	3' UTR (NM_001261, exon 7 of 7)	3766	NM_001261	1025		NM_001261	ENSG00000136807	CDK9	C-2k|CDC2L4|CTK1|PITALRE|TAK	cyclin dependent kinase 9	protein-coding
136743	chr2	181287771	181288200	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	17667	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
225894	chr9	39791351	39792350	+	0	NA	Intergenic	CpG	18309	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
175487	chr4	73224001	73224350	+	0	NA	intron (NM_032217, intron 1 of 33)	AluSz|SINE|Alu	-1118	NM_001286771	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
95575	chr17	36944471	36944830	+	0	NA	TTS (NM_005568)	TTS (NM_005568)	-4304	NM_012138	26574		NM_012138	ENSG00000275700	AATF	BFR2|CHE-1|CHE1|DED	apoptosis antagonizing transcription factor	protein-coding
210449	chr7	100107501	100108300	+	0	NA	TTS (NM_001363671)	TTS (NM_001363671)	6252	NM_001363671	9179		NM_004722	ENSG00000221838	AP4M1	CPSQ3|MU-4|MU-ARP2|SPG50	adaptor related protein complex 4 subunit mu 1	protein-coding
221680	chr8	126400271	126400430	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	74855	NR_125421	101927657		NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
104554	chr17	81328821	81329080	+	0	NA	intron (NR_165247, intron 1 of 2)	intron (NR_165247, intron 1 of 2)	1724	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
224000	chr9	2156851	2156950	+	0	NA	promoter-TSS (NM_001289398)	promoter-TSS (NM_001289398)	-762	NM_001289398	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
179399	chr4	183736421	183736880	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-61372	NR_132761	56977		NM_020225	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
137153	chr2	191075001	191075200	+	0	NA	intron (NM_003151, intron 4 of 23)	AluSx1|SINE|Alu	53574	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
166138	chr3	111543831	111544530	+	0	NA	intron (NR_134917, intron 1 of 14)	AluSc|SINE|Alu	1983	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
15856	chr1	151419471	151419630	+	0	NA	intron (NM_015100, intron 10 of 18)	AluJb|SINE|Alu	19977	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
121186	chr19	46495521	46496180	+	0	NA	promoter-TSS (NM_020709)	promoter-TSS (NM_020709)	17	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
54205	chr12	79889271	79889630	+	0	NA	intron (NM_001143885, intron 2 of 25)	intron (NM_001143885, intron 2 of 25)	24461	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
37819	chr11	33040351	33041230	+	0	NA	intron (NM_001145541, intron 1 of 9)	L2c|LINE|L2	775	NM_001145541	55346		NM_018393	ENSG00000176148	TCP11L1	dJ85M6.3	t-complex 11 like 1	protein-coding
109374	chr19	646601	647580	+	0	NA	TTS (NM_001366018)	TTS (NM_001366018)	7195	NM_001300812	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
47887	chr12	6703451	6704130	+	0	NA	Intergenic	Intergenic	-2975	NM_153685	196500		NM_153685	ENSG00000139200	PIANP	C12orf53|LEDA1|PANP|leda-1	PILR alpha associated neural protein	protein-coding
73784	chr15	45684571	45684930	+	0	NA	intron (NM_021199, intron 7 of 9)	intron (NM_021199, intron 7 of 9)	-20445	NR_135680	105370802		NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA
77586	chr15	85168651	85169100	+	0	NA	Intergenic	MIR|SINE|MIR	65906	NR_158179	101929479		NR_158179		LOC101929479	-	golgin A2 pseudogene	pseudo
6012	chr1	27044321	27045150	+	0	NA	Intergenic	Intergenic	-31885	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
53114	chr12	57784851	57785230	+	0	NA	intron (NM_005726, intron 2 of 5)	AluY|SINE|Alu	2253	NM_001172695	10102		NM_005726	ENSG00000123297	TSFM	EFTS|EFTSMT	Ts translation elongation factor, mitochondrial	protein-coding
35370	chr11	1261101	1261550	+	0	NA	intron (NM_002458, intron 48 of 48)	intron (NM_002458, intron 48 of 48)	4720	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
72570	chr15	34567421	34567680	+	0	NA	intron (NM_001023567, intron 1 of 23)	intron (NM_001023567, intron 1 of 23)	16020	NR_027410	440270		NM_001023567	ENSG00000215252	GOLGA8B	GOLGA5	golgin A8 family member B	protein-coding
134855	chr2	148669601	148670000	+	0	NA	intron (NM_015630, intron 1 of 13)	L1ME1|LINE|L1	25049	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
238348	chrX	149552671	149553230	+	0	NA	3' UTR (NM_001324276, exon 6 of 6)	3' UTR (NM_001324276, exon 6 of 6)	-3026	NM_001323079	101928917		NM_001323079	ENSG00000283697	HSFX3	-	heat shock transcription factor family, X-linked member 3	protein-coding
223548	chr8	144184751	144185950	+	0	NA	intron (NM_032450, intron 7 of 43)	intron (NM_032450, intron 7 of 43)	36705	NM_001288814	727957		NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat like repeat family member 1	protein-coding
168286	chr3	141497151	141497830	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	10463	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
80593	chr16	2910071	2910500	+	0	NA	Intergenic	AluJo|SINE|Alu	-1646	NM_001308068	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
1403	chr1	2553101	2553300	+	0	NA	intron (NR_037844, intron 4 of 6)	intron (NR_037844, intron 4 of 6)	-3165	NM_001297605	8764		NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
118759	chr19	38372921	38373430	+	0	NA	Intergenic	AluSz|SINE|Alu	-1396	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
194104	chr6	31946121	31946780	+	0	NA	TTS (NM_001282457).3	TTS (NM_001282457).3	355	NM_001710	629		NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
67577	chr14	71566271	71566650	+	0	NA	intron (NM_001354289, intron 5 of 23)	L1M5|LINE|L1	-19838	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
224281	chr9	6417451	6418030	+	0	NA	intron (NR_046386, intron 1 of 16)	intron (NR_046386, intron 1 of 16)	4541	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
58835	chr12	132858771	132859130	+	0	NA	intron (NM_018223, intron 8 of 17)	intron (NM_018223, intron 8 of 17)	28655	NM_001161346	55743		NM_018223	ENSG00000072609	CHFR	RNF116|RNF196	checkpoint with forkhead and ring finger domains	protein-coding
86409	chr16	66760501	66760730	+	0	NA	intron (NM_001136505, intron 16 of 18)	AluSx4|SINE|Alu	-8787	NM_001323955	1783		NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding
59608	chr13	27790601	27790800	+	0	NA	Intergenic	Intergenic	-1783	NM_145657	219409		NM_145657	ENSG00000169840	GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
200355	chr6	134080221	134080580	+	0	NA	Intergenic	MER72|LTR|ERV1	-27776	NM_145176	154091		NM_145176	ENSG00000146411	SLC2A12	GLUT12|GLUT8	solute carrier family 2 member 12	protein-coding
148144	chr20	63495301	63495500	+	0	NA	intron (NM_001958, intron 3 of 7)	MIRb|SINE|MIR	3683	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
136644	chr2	179440771	179440930	+	0	NA	Intergenic	Intergenic	121738	NM_001113398	151126		NM_152520	ENSG00000144331	ZNF385B	ZNF533	zinc finger protein 385B	protein-coding
202053	chr6	154160921	154161250	+	0	NA	intron (NM_001130700, intron 11 of 11)	intron (NM_001130700, intron 11 of 11)	71323	NM_001285527	4988		NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor mu 1	protein-coding
161216	chr3	39177751	39178730	+	0	NA	Intergenic	Intergenic	14355	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
81074	chr16	4338221	4338480	+	0	NA	3' UTR (NM_032575, exon 7 of 7).2	3' UTR (NM_032575, exon 7 of 7).2	-10010	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
220289	chr8	98039701	98039900	+	0	NA	Intergenic	Intergenic	2417	NR_002581	26775		NR_002581	ENSG00000207067	SNORA72	RNU72|U72	small nucleolar RNA, H/ACA box 72	snoRNA
97641	chr17	44194021	44194280	+	0	NA	3' UTR (NM_001382312, exon 13 of 13)	3' UTR (NM_001382312, exon 13 of 13)	5219	NM_001382315	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
226461	chr9	71728801	71729450	+	0	NA	intron (NM_001135820, intron 9 of 22)	AluJb|SINE|Alu	39388	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
11029	chr1	84936071	84936600	+	0	NA	intron (NM_153259, intron 11 of 13)	intron (NM_153259, intron 11 of 13)	-43129	NM_012152	23566		NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
15021	chr1	148317951	148318930	+	0	NA	Intergenic	Intergenic	16114	NR_049810	100847044		NR_049810	ENSG00000283676	MIR5087	-	microRNA 5087	ncRNA
168764	chr3	151227751	151228600	+	0	NA	intron (NM_014879, intron 1 of 2)	intron (NM_014879, intron 1 of 2)	20816	NM_001081455	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
169542	chr3	170171301	170171730	+	0	NA	intron (NM_001308116, intron 3 of 14)	intron (NM_001308116, intron 3 of 14)	10218	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
198584	chr6	107655351	107655450	+	0	NA	intron (NM_018013, intron 6 of 6)	intron (NM_018013, intron 6 of 6)	76750	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
209326	chr7	76168321	76169400	+	0	NA	Intergenic	AluSc|SINE|Alu	-33036	NM_001291831	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
71727	chr15	20356021	20357180	+	0	NA	Intergenic	Intergenic	73856	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
171363	chr3	196073221	196073900	+	0	NA	intron (NM_001313966, intron 2 of 16)	intron (NM_001313966, intron 2 of 16)	8530	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
29882	chr10	72834221	72834500	+	0	NA	exon (NM_001270680, exon 2 of 8)	exon (NM_001270680, exon 2 of 8)	-59379	NM_152635	170392		NM_152635	ENSG00000138315	OIT3	LZP	oncoprotein induced transcript 3	protein-coding
229593	chr9	123377171	123377650	+	0	NA	non-coding (NR_104603, exon 8 of 9)	non-coding (NR_104603, exon 8 of 9)	8631	NR_104603	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
103408	chr17	78185601	78185800	+	0	NA	intron (NM_001363848, intron 2 of 5)	AluSx1|SINE|Alu	1352	NM_001346663	7083		NM_003258	ENSG00000167900	TK1	TK2	thymidine kinase 1	protein-coding
226790	chr9	76666071	76666250	+	0	NA	intron (NM_001308047, intron 9 of 17)	LTR13|LTR|ERVK	26255	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
230062	chr9	127426151	127426250	+	0	NA	intron (NM_001286696, intron 1 of 4)	L1MB7|LINE|L1	1818	NM_007135	7633		NM_007135	ENSG00000196152	ZNF79	pT7	zinc finger protein 79	protein-coding
191514	chr6	11319371	11319900	+	0	NA	intron (NR_073131, intron 1 of 9)	(CACACA)n|Simple_repeat|Simple_repeat	62713	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
192561	chr6	25410101	25410700	+	0	NA	intron (NM_001173977, intron 2 of 36)	MIR|SINE|MIR	131026	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
50691	chr12	48887151	48887250	+	0	NA	Intergenic	Intergenic	-16933	NM_033124	85478		NM_033124	ENSG00000139537	CCDC65	CFAP250|DRC2|FAP250|NYD-SP28	coiled-coil domain containing 65	protein-coding
52059	chr12	54026871	54027630	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	-1190	NM_004503	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
120013	chr19	41937301	41937700	+	0	NA	Intergenic	Intergenic	8680	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
9138	chr1	45498421	45498680	+	0	NA	intron (NR_033298, intron 2 of 5)	intron (NR_033298, intron 2 of 5)	1523	NM_001358406	126661		NM_001102601	ENSG00000280670	CCDC163	C1orf231|CCDC163P	CCDC163 homolog	protein-coding
168663	chr3	150540401	150540600	+	0	NA	Intergenic	AluJo|SINE|Alu	5996	NM_014445	27230		NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding
127950	chr2	46546851	46547650	+	0	NA	intron (NM_012249, intron 2 of 4)	intron (NM_012249, intron 2 of 4)	-4673	NM_001371283	90423		NM_080653	ENSG00000250565	ATP6V1E2	ATP6E1|ATP6EL2|ATP6V1EL2|VMA4	ATPase H+ transporting V1 subunit E2	protein-coding
122315	chr19	49129301	49129500	+	0	NA	exon (NM_003660, exon 5 of 30)	exon (NM_003660, exon 5 of 30)	9856	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
203139	chr6	166950601	166952250	+	0	NA	intron (NM_003730, intron 2 of 8)	LTR13|LTR|ERVK	5125	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
6175	chr1	27432351	27432930	+	0	NA	intron (NM_006990, intron 1 of 8)	AluY|SINE|Alu	40018	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
156909	chr22	42262821	42263400	+	0	NA	intron (NM_005650, intron 1 of 5)	MIRb|SINE|MIR	-6643	NR_036498	388906		NR_036498		OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
22204	chr1	212458721	212459030	+	0	NA	Intergenic	Intergenic	25955	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
133137	chr2	112669301	112669500	+	0	NA	Intergenic	HAL1|LINE|L1	23461	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
214441	chr7	149961791	149962680	+	0	NA	intron (NM_001351028, intron 6 of 9)	intron (NM_001351028, intron 6 of 9)	-79120	NR_148939	100134040		NR_148939		LOC100134040	-	uncharacterized LOC100134040	ncRNA
162781	chr3	49089371	49089530	+	0	NA	intron (NM_001320584, intron 1 of 9)	L1ME3D|LINE|L1	4182	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
233705	chrX	1246301	1247280	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-22024	NM_172247	1438		NM_006140	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMCSFR-alpha|GMR|GMR-alpha|SMDP4|alphaGMR	colony stimulating factor 2 receptor subunit alpha	protein-coding
86670	chr16	67485071	67485430	+	0	NA	Intergenic	Intergenic	-1703	NM_001138	181		NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related neuropeptide	protein-coding
200967	chr6	139262321	139262850	+	0	NA	exon (NM_153235, exon 5 of 10)	exon (NM_153235, exon 5 of 10)	29413	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
130969	chr2	87547751	87548480	+	0	NA	Intergenic	Intergenic	78165	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
44436	chr11	104731851	104732150	+	0	NA	Intergenic	Intergenic	-122698	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
53535	chr12	67274321	67274580	+	0	NA	intron (NM_001329674, intron 2 of 15)	intron (NM_001329674, intron 2 of 15)	5092	NM_001329676	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
217987	chr8	38377321	38377750	+	0	NA	intron (NM_017778, intron 1 of 9)	AluSz|SINE|Alu	4736	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
99886	chr17	56715701	56716100	+	0	NA	Intergenic	MIRb|SINE|MIR	118020	NM_001085430	339210		NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
127600	chr2	42935871	42936030	+	0	NA	Intergenic	Intergenic	103593	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
64843	chr14	35199321	35199780	+	0	NA	intron (NM_001256678, intron 4 of 6)	MLT1A1|LTR|ERVL-MaLR	76998	NM_001256679	9692		NM_014672	ENSG00000100890	PRORP	COXPD54|KIAA0391|MRPP3	protein only RNase P catalytic subunit	protein-coding
70359	chr14	101877901	101878300	+	0	NA	intron (NM_178587, intron 2 of 11)	MLT1B|LTR|ERVL-MaLR	68237	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
79931	chr16	1740571	1740930	+	0	NA	intron (NM_015133, intron 4 of 31)	intron (NM_015133, intron 4 of 31)	5765	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
156659	chr22	41640551	41641200	+	0	NA	intron (NM_001288976, intron 6 of 12)	MIRb|SINE|MIR	19580	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
112182	chr19	5665301	5665500	+	0	NA	intron (NM_001320571, intron 15 of 18)	MIRb|SINE|MIR	14838	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
190716	chr6	286551	287030	+	0	NA	Intergenic	Intergenic	-5267	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
227106	chr9	85786171	85786430	+	0	NA	Intergenic	Intergenic	-19702	NR_029410	389765		NR_029410		LOC389765	-	kinesin family member 27 pseudogene	pseudo
46712	chr11	128848501	128849180	+	0	NA	intron (NM_153764, intron 1 of 1)	intron (NM_153764, intron 1 of 1)	-6371	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
37443	chr11	17864671	17864830	+	0	NA	intron (NR_104041, intron 9 of 9)	intron (NR_104041, intron 9 of 9)	128802	NM_004976	3746		NM_004976	ENSG00000129159	KCNC1	EPM7|KV3.1|KV4|NGK2	potassium voltage-gated channel subfamily C member 1	protein-coding
105275	chr17	82460271	82460430	+	0	NA	intron (NM_001083608, intron 2 of 9)	AluSz|SINE|Alu	1609	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
145057	chr20	38436221	38436480	+	0	NA	promoter-TSS (NR_027241)	promoter-TSS (NR_027241)	-973	NR_152754	388796		NR_015366	ENSG00000196756	SNHG17	-	small nucleolar RNA host gene 17	ncRNA
173048	chr4	5247101	5247300	+	0	NA	intron (NM_018401, intron 3 of 11)	L1PA4|LINE|L1	195720	NM_018401	55351		NM_018401	ENSG00000152953	STK32B	HSA250839|STK32|STKG6|YANK2	serine/threonine kinase 32B	protein-coding
69791	chr14	99190771	99192690	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	80467	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
86521	chr16	67154821	67155730	+	0	NA	exon (NM_003789, exon 4 of 5)	exon (NM_003789, exon 4 of 5)	-4277	NM_033309	84752		NM_033309	ENSG00000237172	B3GNT9	-	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding
36246	chr11	3757121	3757380	+	0	NA	intron (NM_001365128, intron 10 of 32)	AluSx|SINE|Alu	40296	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
24943	chr10	1255251	1255550	+	0	NA	intron (NM_018702, intron 4 of 9)	intron (NM_018702, intron 4 of 9)	95632	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
25038	chr10	3762821	3763600	+	0	NA	Intergenic	Intergenic	21999	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
120319	chr19	43507301	43507930	+	0	NA	intron (NM_001320869, intron 4 of 4)	MSR1|Satellite|Satellite	-2782	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
63471	chr13	114146421	114146930	+	0	NA	Intergenic	Intergenic	-14052	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
199977	chr6	127981121	127981530	+	0	NA	intron (NM_001291981, intron 27 of 32).2	intron (NM_001291981, intron 27 of 32).2	-46540	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
167306	chr3	128683871	128684830	+	0	NA	Intergenic	AluJb|SINE|Alu	-33532	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
119843	chr19	41381571	41381730	+	0	NA	intron (NM_001369864, intron 3 of 4)	AluY|SINE|Alu	4386	NM_001042595	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
32530	chr10	102994601	102995450	+	0	NA	intron (NM_017649, intron 1 of 7)	intron (NM_017649, intron 1 of 7)	-76690	NR_160733	107984265		NR_160733	ENSG00000286575	LOC107984265	-	uncharacterized LOC107984265	ncRNA
124817	chr2	7611171	7611530	+	0	NA	Intergenic	Intergenic	190089	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
132965	chr2	111472821	111473100	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	22201	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
101936	chr17	74480551	74480850	+	0	NA	intron (NM_007261, intron 4 of 6)	intron (NM_007261, intron 4 of 6)	14066	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
111878	chr19	4654201	4654550	+	0	NA	3' UTR (NM_001167942, exon 2 of 2)	3' UTR (NM_001167942, exon 2 of 2)	14358	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
75330	chr15	65327971	65328530	+	0	NA	3' UTR (NM_004884, exon 14 of 14)	3' UTR (NM_004884, exon 14 of 14)	23573	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
11197	chr1	88595321	88595630	+	0	NA	intron (NR_110682, intron 1 of 3)	intron (NR_110682, intron 1 of 3)	-88669	NM_001320707	5586		NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
90298	chr17	1053351	1053450	+	0	NA	intron (NM_001282149, intron 9 of 17).3	intron (NM_001282149, intron 9 of 17).3	-21569	NM_001256847	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
194	chr1	687971	688130	+	0	NA	Intergenic	Intergenic	-1396	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
171069	chr3	195439851	195439950	+	0	NA	intron (NM_012287, intron 1 of 22)	AluSz|SINE|Alu	3120	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
69982	chr14	99951971	99952450	+	0	NA	Intergenic	(GATGGT)n|Simple_repeat|Simple_repeat	-19212	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
17615	chr1	156922851	156923250	+	0	NA	intron (NM_144702, intron 1 of 14)	intron (NM_144702, intron 1 of 14)	2418	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
82518	chr16	17579221	17579580	+	0	NA	Intergenic	Intergenic	-108440	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
91303	chr17	4258501	4258700	+	0	NA	intron (NM_001330063, intron 1 of 24)	intron (NM_001330063, intron 1 of 24)	5247	NM_001257999	51479		NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
210476	chr7	100154821	100155330	+	0	NA	TTS (NR_134528)	TTS (NR_134528)	1594	NR_039802	100616439		NR_039802	ENSG00000284518	MIR4658	-	microRNA 4658	ncRNA
26341	chr10	15207851	15209400	+	0	NA	Intergenic	Intergenic	-39932	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
222285	chr8	133453071	133454650	+	0	NA	TTS (NM_003033)	TTS (NM_003033)	118027	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
83707	chr16	28495951	28496050	+	0	NA	exon (NM_018690, exon 2 of 4)	exon (NM_018690, exon 2 of 4)	1357	NM_018690	55911		NM_018690	ENSG00000184730	APOBR	APOB100R|APOB48R	apolipoprotein B receptor	protein-coding
71915	chr15	22784851	22785150	+	0	NA	Intergenic	AluJo|SINE|Alu	-1225	NM_001142275	123606		NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
92335	chr17	8157971	8158130	+	0	NA	Intergenic	AluSz|SINE|Alu	4826	NM_001330125	6844		NM_014232	ENSG00000220205	VAMP2	NEDHAHM|SYB2|VAMP-2	vesicle associated membrane protein 2	protein-coding
20043	chr1	185412571	185412730	+	0	NA	Intergenic	Intergenic	-77611	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
93855	chr17	21003851	21004150	+	0	NA	intron (NM_015276, intron 12 of 12)	intron (NM_015276, intron 12 of 12)	39011	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
13576	chr1	116145721	116146380	+	0	NA	Intergenic	LTR12C|LTR|ERV1	34295	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
205451	chr7	17142271	17143100	+	0	NA	Intergenic	Intergenic	-155967	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
17774	chr1	159075401	159075750	+	0	NA	intron (NM_004833, intron 1 of 5)	(AC)n|Simple_repeat|Simple_repeat	1191	NM_004833	9447		NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding
87729	chr16	75110921	75112180	+	0	NA	TTS (NM_194436)	TTS (NM_194436)	5222	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
174500	chr4	39957451	39957900	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluY|SINE|Alu	20236	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
82382	chr16	16073571	16073930	+	0	NA	intron (NM_004996, intron 14 of 30)	AluJr4|SINE|Alu	124134	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
190133	chr5	178066851	178067150	+	0	NA	Intergenic	Intergenic	-46532	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
46224	chr11	124116151	124116400	+	0	NA	intron (NM_014622, intron 1 of 17)	intron (NM_014622, intron 1 of 17)	825	NM_001130142	4013		NM_014622	ENSG00000110002	VWA5A	BCSC-1|BCSC1|LOH11CR2A	von Willebrand factor A domain containing 5A	protein-coding
57248	chr12	121568871	121569680	+	0	NA	intron (NM_001005366, intron 4 of 22)	intron (NM_001005366, intron 4 of 22)	10971	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
132851	chr2	110858121	110859400	+	0	NA	intron (NM_001371254, intron 10 of 18)	intron (NM_001371254, intron 10 of 18)	126187	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
146312	chr20	49189671	49190450	+	0	NA	intron (NM_001319135, intron 1 of 14)	LTR84b|LTR|ERVL	-1690	NM_001037328	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
50399	chr12	47317121	47317630	+	0	NA	Intergenic	AluSx|SINE|Alu	-9976	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
183375	chr5	77465221	77465480	+	0	NA	intron (NM_018268, intron 2 of 12)	intron (NM_018268, intron 2 of 12)	26966	NM_018268	55255		NM_018268	ENSG00000164253	WDR41	MSTP048	WD repeat domain 41	protein-coding
199124	chr6	111699051	111699580	+	0	NA	intron (NM_153048, intron 6 of 10)	intron (NM_153048, intron 6 of 10)	59816	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
35401	chr11	1386451	1386900	+	0	NA	Intergenic	AluYh3|SINE|Alu	-3259	NR_046331	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
31409	chr10	95558921	95559450	+	0	NA	intron (NM_001384456, intron 1 of 27)	intron (NM_001384456, intron 1 of 27)	2186	NM_001384465	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
35895	chr11	2406971	2407750	+	0	NA	intron (NM_014555, intron 19 of 23)	intron (NM_014555, intron 19 of 23)	6610	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
9568	chr1	51767001	51767480	+	0	NA	intron (NM_024586, intron 12 of 23)	AluJb|SINE|Alu	37390	NM_001350210	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
139718	chr2	227826271	227826430	+	0	NA	Intergenic	Intergenic	12508	NM_004591	6364		NM_004591	ENSG00000115009	CCL20	CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38	C-C motif chemokine ligand 20	protein-coding
183840	chr5	86968401	86968680	+	0	NA	Intergenic	Intergenic	146414	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
113909	chr19	10694371	10694730	+	0	NA	Intergenic	AluSg|SINE|Alu	-6889	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
88033	chr16	81366321	81366780	+	0	NA	intron (NM_022041, intron 9 of 10)	intron (NM_022041, intron 9 of 10)	-18468	NR_039871	100616150		NR_039871	ENSG00000284473	MIR4720	-	microRNA 4720	ncRNA
34016	chr10	124703651	124704250	+	0	NA	promoter-TSS (NR_120630)	promoter-TSS (NR_120630)	-78	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
210765	chr7	100690671	100691030	+	0	NA	intron (NR_164719, intron 1 of 26)	intron (NR_164719, intron 1 of 26)	3400	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
122426	chr19	49464001	49464450	+	0	NA	exon (NM_153329, exon 10 of 17)	exon (NM_153329, exon 10 of 17)	-9990	NM_001204502	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
207785	chr7	50218071	50218430	+	0	NA	Intergenic	Intergenic	-85814	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
133028	chr2	111897671	111899780	+	0	NA	5' UTR (NM_006343, exon 1 of 19)	5' UTR (NM_006343, exon 1 of 19)	118	NM_006343	10461		NM_006343	ENSG00000153208	MERTK	MER|RP38|Tyro12|c-Eyk|c-mer	MER proto-oncogene, tyrosine kinase	protein-coding
49146	chr12	14944271	14945100	+	0	NA	intron (NR_135637, intron 3 of 3)	intron (NR_135637, intron 3 of 3)	4211	NR_135637	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
106920	chr18	26176121	26176580	+	0	NA	intron (NM_144662, intron 4 of 6)	intron (NM_144662, intron 4 of 6)	42481	NM_001308188	143471		NM_144662	ENSG00000154611	PSMA8	PSMA7L	proteasome 20S subunit alpha 8	protein-coding
68693	chr14	90403201	90404000	+	0	NA	intron (NM_006888, intron 3 of 5)	intron (NM_006888, intron 3 of 5)	5350	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
127878	chr2	45936171	45936630	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	284725	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
179871	chr5	606551	606850	+	0	NA	intron (NR_103444, intron 2 of 2)	intron (NR_103444, intron 2 of 2)	5510	NR_103444	100996325		NR_103444		CEP72-DT	-	CEP72 divergent transcript	ncRNA
35860	chr11	2376471	2377600	+	0	NA	promoter-TSS (NM_004356)	promoter-TSS (NM_004356)	-275	NM_004356	975		NM_004356	ENSG00000110651	CD81	CVID6|S5.7|TAPA1|TSPAN28	CD81 molecule	protein-coding
12797	chr1	109794971	109795130	+	0	NA	Intergenic	Intergenic	-31127	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
223567	chr8	144264001	144264480	+	0	NA	exon (NM_015201, exon 7 of 16)	exon (NM_015201, exon 7 of 16)	-1503	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
238367	chrX	149926201	149926600	+	0	NA	Intergenic	MER11D|LTR|ERVK	-3173	NM_001351114	101927685		NM_001351114	ENSG00000283463	HSFX4	-	heat shock transcription factor family, X-linked member 4	protein-coding
108369	chr18	68712571	68713400	+	0	NA	intron (NM_019022, intron 2 of 15)	MER76|LTR|ERVL	2123	NM_001350517	54495		NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
74385	chr15	58902571	58902930	+	0	NA	intron (NR_135043, intron 4 of 18)	AluSx1|SINE|Alu	30929	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
70651	chr14	102946601	102947050	+	0	NA	intron (NM_006035, intron 27 of 36)	intron (NM_006035, intron 27 of 36)	24162	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
220853	chr8	103298371	103299240	+	0	NA	promoter-TSS (NR_133921)	promoter-TSS (NR_133921)	13	NR_148214	105369147		NR_148213	ENSG00000247081	LOC105369147	-	uncharacterized LOC105369147	ncRNA
72099	chr15	28923801	28924430	+	0	NA	intron (NM_001353790, intron 2 of 14)	intron (NM_001353790, intron 2 of 14)	2478	NM_001130414	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
113659	chr19	10380121	10381550	+	0	NA	promoter-TSS (NM_003331)	promoter-TSS (NM_003331)	-263	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
212835	chr7	130523651	130523830	+	0	NA	intron (NM_012133, intron 20 of 23)	intron (NM_012133, intron 20 of 23)	-19713	NR_024086	53844		NR_024086		COPG2IT1	CIT1|COPG2AS|DKFZP761N09121|NCRNA00170	COPG2 imprinted transcript 1	ncRNA
213002	chr7	131003421	131003880	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	90186	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
13772	chr1	117070121	117070380	+	0	NA	intron (NM_003594, intron 3 of 22)	Tigger3a|DNA|TcMar-Tigger	9924	NM_003594	8458		NM_003594	ENSG00000116830	TTF2	F2|HuF2|ZGRF6	transcription termination factor 2	protein-coding
132300	chr2	105175071	105175830	+	0	NA	Intergenic	Intergenic	31337	NR_136172	105373984		NR_136172	ENSG00000226508	LINC01918	-	long intergenic non-protein coding RNA 1918	ncRNA
52985	chr12	57491321	57491880	+	0	NA	intron (NM_004990, intron 7 of 20)	L2b|LINE|L2	-2776	NM_001319850	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
143143	chr20	23928521	23929300	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-49162	NM_001900	1473		NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
69266	chr14	93056351	93057000	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	-10777	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
215738	chr8	1791821	1792260	+	0	NA	Intergenic	L1MB8|LINE|L1	-9085	NR_037445	100500912		NR_037445	ENSG00000283858	MIR3674	-	microRNA 3674	ncRNA
166276	chr3	112488051	112488350	+	0	NA	intron (NM_001085357, intron 1 of 3)	L2|LINE|L2	11272	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
97349	chr17	43289901	43290940	+	0	NA	Intergenic	U2|snRNA|snRNA	-6091	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
137488	chr2	197141751	197142980	+	0	NA	intron (NM_153697, intron 3 of 9)	intron (NM_153697, intron 3 of 9)	-55626	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
28275	chr10	46018551	46019050	+	0	NA	intron (NM_001145263, intron 1 of 9)	intron (NM_001145263, intron 1 of 9)	737	NM_001145262	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
47688	chr12	6369071	6369730	+	0	NA	intron (NM_001159575, intron 2 of 12)	intron (NM_001159575, intron 2 of 12)	-5760	NM_001270987	4055		NM_002342	ENSG00000111321	LTBR	D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	lymphotoxin beta receptor	protein-coding
209415	chr7	76352401	76352830	+	0	NA	intron (NM_012479, intron 1 of 1)	intron (NM_012479, intron 1 of 1)	6376	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
230236	chr9	127876751	127876850	+	0	NA	intron (NM_001318121, intron 1 of 6)	intron (NM_001318121, intron 1 of 6)	875	NM_000476	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
194828	chr6	34389351	34390150	+	0	NA	intron (NM_001202470, intron 5 of 8)	AluYj4|SINE|Alu	2919	NM_006703	11165		NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
30916	chr10	87091771	87092570	+	0	NA	intron (NM_001318902, intron 1 of 14)	intron (NM_001318902, intron 1 of 14)	1917	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
19492	chr1	175125301	175125500	+	0	NA	intron (NM_022093, intron 12 of 18)	intron (NM_022093, intron 12 of 18)	57567	NM_022093	63923		NM_022093	ENSG00000120332	TNN	TN-W|TNW	tenascin N	protein-coding
137615	chr2	197302771	197303600	+	0	NA	promoter-TSS (NR_046837)	promoter-TSS (NR_046837)	-666	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
7351	chr1	32771021	32771280	+	0	NA	exon (NM_001198972, exon 6 of 7)	exon (NM_001198972, exon 6 of 7)	5523	NM_001198972	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
229020	chr9	113875951	113876730	+	0	NA	promoter-TSS (NM_001318040)	promoter-TSS (NM_001318040)	31	NM_001318042	114991		NM_133374	ENSG00000157657	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
39124	chr11	48129971	48130130	+	0	NA	intron (NM_002843, intron 7 of 24)	MLT1J|LTR|ERVL-MaLR	33268	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
95069	chr17	32874921	32875180	+	0	NA	intron (NM_015194, intron 1 of 21)	intron (NM_015194, intron 1 of 21)	2074	NM_015194	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
91061	chr17	3010271	3010430	+	0	NA	intron (NM_001100398, intron 16 of 23)	AluSc|SINE|Alu	-44455	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
223710	chr8	144452051	144452350	+	0	NA	intron (NM_138496, intron 4 of 4)	intron (NM_138496, intron 4 of 4)	-7760	NM_013432	4796		NM_013432	ENSG00000160949	TONSL	IKBR|NFKBIL2|SEMDSP	tonsoku like, DNA repair protein	protein-coding
59807	chr13	30382921	30383180	+	0	NA	Intergenic	Intergenic	-9136	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
209688	chr7	81436021	81436480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	125569	NR_136264	105369146		NR_136264		LOC105369146	-	uncharacterized LOC105369146	ncRNA
33980	chr10	124663101	124663300	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-40828	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
98626	chr17	47803371	47803530	+	0	NA	Intergenic	Intergenic	18344	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
232011	chr9	133359101	133359980	+	0	NA	intron (NM_017503, intron 3 of 5)	intron (NM_017503, intron 3 of 5)	2990	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
41822	chr11	67028871	67029030	+	0	NA	intron (NM_177963, intron 1 of 7)	intron (NM_177963, intron 1 of 7)	5816	NM_177963	91683		NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
159235	chr3	12914351	12915130	+	0	NA	intron (NM_014869, intron 8 of 13)	intron (NM_014869, intron 8 of 13)	-29529	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
48765	chr12	11544451	11544900	+	0	NA	Intergenic	Intergenic	-3355	NR_033890	338817		NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
26649	chr10	22573671	22574250	+	0	NA	intron (NM_001330062, intron 4 of 9)	intron (NM_001330062, intron 4 of 9)	-136031	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
41993	chr11	67386651	67387350	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-4986	NM_004584	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
158925	chr3	10023151	10023550	+	0	NA	intron (NR_002786, intron 2 of 2)	intron (NR_002786, intron 2 of 2)	2786	NR_002786	152302		NR_002786	ENSG00000186162	CIDECP1	CICE|CIDECP	CIDEC pseudogene 1	pseudo
72127	chr15	28975401	28976000	+	0	NA	intron (NM_001353793, intron 1 of 12).2	L1MC4|LINE|L1	-19827	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
73743	chr15	45278851	45280080	+	0	NA	promoter-TSS (NR_120335)	promoter-TSS (NR_120335)	-243	NR_120335	101928414		NR_120335	ENSG00000259520	SLC28A2-AS1	-	SLC28A2 antisense RNA 1	ncRNA
189065	chr5	170265601	170265880	+	0	NA	intron (NM_005565, intron 10 of 20)	intron (NM_005565, intron 10 of 20)	32037	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
95603	chr17	37506721	37506980	+	0	NA	intron (NM_007026, intron 1 of 2)	intron (NM_007026, intron 1 of 2)	16959	NM_007026	11072		NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
169746	chr3	172519551	172520000	+	0	NA	intron (NM_001190943, intron 1 of 1)	intron (NM_001190943, intron 1 of 1)	3655	NM_001190943	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
131267	chr2	96061171	96061330	+	0	NA	Intergenic	Intergenic	-25276	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
76034	chr15	72199351	72200630	+	0	NA	intron (NM_182470, intron 10 of 10)	intron (NM_182470, intron 10 of 10)	-2203	NM_001012642	196996		NM_001012642	ENSG00000175318	GRAMD2A	GRAMD2	GRAM domain containing 2A	protein-coding
201269	chr6	144198001	144198400	+	0	NA	Intergenic	Intergenic	47683	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
94497	chr17	29290971	29291610	+	0	NA	intron (NM_020772, intron 1 of 3)	intron (NM_020772, intron 1 of 3)	2858	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
48790	chr12	11770071	11770430	+	0	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	120576	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
9491	chr1	51234801	51235200	+	0	NA	promoter-TSS (NR_147076)	promoter-TSS (NR_147076)	96	NR_147076	105378716		NR_147076	ENSG00000203356	LINC01562	-	long intergenic non-protein coding RNA 1562	ncRNA
123734	chr19	55059901	55060100	+	0	NA	intron (NM_138412, intron 2 of 7).5	LTR5A|LTR|ERVK	3148	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
114201	chr19	11424451	11424750	+	0	NA	intron (NM_001302453, intron 7 of 12)	L1MC4a|LINE|L1	-5286	NM_001035223	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
124254	chr19	57613921	57615300	+	0	NA	intron (NM_003435, intron 1 of 2)	intron (NM_003435, intron 1 of 2)	368	NM_003435	7693		NM_003435	ENSG00000213762	ZNF134	pHZ-15	zinc finger protein 134	protein-coding
18366	chr1	161309801	161310350	+	0	NA	promoter-TSS (NM_000530)	promoter-TSS (NM_000530)	-107	NM_001315491	4359		NM_000530	ENSG00000158887	MPZ	CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0	myelin protein zero	protein-coding
25255	chr10	6065401	6066000	+	0	NA	Intergenic	Intergenic	-3333	NM_001308243	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
67120	chr14	68501871	68502030	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	126837	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
176170	chr4	83280921	83281600	+	0	NA	intron (NM_015697, intron 1 of 6)	intron (NM_015697, intron 1 of 6)	3538	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
84751	chr16	30965851	30966300	+	0	NA	exon (NM_014712, exon 8 of 19)	exon (NM_014712, exon 8 of 19)	8321	NM_014712	9739		NM_014712	ENSG00000099381	SETD1A	EPEDD|EPEO2|KMT2F|NEDSID|Set1|Set1A	SET domain containing 1A, histone lysine methyltransferase	protein-coding
143392	chr20	29218621	29218880	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	138360	NR_132316	102723316		NR_132316		FRG1DP	-	FSHD region gene 1 family member D, pseudogene	pseudo
111950	chr19	4798051	4798880	+	0	NA	3' UTR (NM_018708, exon 1 of 1)	3' UTR (NM_018708, exon 1 of 1)	6731	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
6215	chr1	27488151	27488700	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	1742	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
83219	chr16	23774251	23774350	+	0	NA	Intergenic	AluSz|SINE|Alu	19274	NM_022097	63928		NM_022097	ENSG00000166869	CHP2	-	calcineurin like EF-hand protein 2	protein-coding
107111	chr18	35061851	35062150	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	20587	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
28622	chr10	58337621	58337880	+	0	NA	intron (NM_003338, intron 1 of 6)	intron (NM_003338, intron 1 of 6)	2744	NM_003338	7321		NM_003338	ENSG00000072401	UBE2D1	E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A	ubiquitin conjugating enzyme E2 D1	protein-coding
235295	chrX	42399751	42400000	+	0	NA	Intergenic	Intergenic	378288	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
214337	chr7	149414551	149415680	+	0	NA	Intergenic	Intergenic	45947	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
199999	chr6	128491651	128491950	+	0	NA	intron (NM_001291981, intron 1 of 32).2	intron (NM_001291981, intron 1 of 32).2	28799	NM_001291982	5796		NM_002844	ENSG00000152894	PTPRK	R-PTP-kappa	protein tyrosine phosphatase receptor type K	protein-coding
224057	chr9	3524201	3525100	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	1351	NM_002919	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
228917	chr9	113076471	113076930	+	0	NA	Intergenic	CpG	-19976	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
203248	chr6	169214771	169214930	+	0	NA	TTS (NM_001381939)	TTS (NM_001381939)	1638	NR_134621	101929523		NR_134621		THBS2-AS1	-	THBS2 antisense RNA 1	ncRNA
212769	chr7	129953951	129954500	+	0	NA	Intergenic	Intergenic	-1265	NM_001202498	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
5193	chr1	24954821	24955880	+	0	NA	intron (NM_001031680, intron 1 of 5)	MIRb|SINE|MIR	9660	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
111600	chr19	4095251	4095630	+	0	NA	exon (NM_030662, exon 9 of 11)	exon (NM_030662, exon 9 of 11)	-28541	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
46516	chr11	128449351	128449830	+	0	NA	Intergenic	Intergenic	72720	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
76817	chr15	77084651	77084750	+	0	NA	Intergenic	Intergenic	-13591	NM_198902	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
211106	chr7	102508571	102508900	+	0	NA	intron (NM_001367767, intron 4 of 20)	AluSx1|SINE|Alu	9042	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
17930	chr1	160291101	160292200	+	0	NA	intron (NM_001098398, intron 30 of 32)	intron (NM_001098398, intron 30 of 32)	-6499	NR_036492	5824		NM_002857	ENSG00000162735	PEX19	D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1	peroxisomal biogenesis factor 19	protein-coding
9001	chr1	44696801	44697580	+	0	NA	intron (NM_001145636, intron 3 of 11)	intron (NM_001145636, intron 3 of 11)	22476	NM_001145636	339541		NM_001004307	ENSG00000198520	ARMH1	C1orf228|NCRNA00082|p40	armadillo like helical domain containing 1	protein-coding
114080	chr19	11103521	11104080	+	0	NA	intron (NM_001195800, intron 3 of 15)	MER83|LTR|ERV1	-9674	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
204581	chr7	5289421	5290330	+	0	NA	intron (NM_153247, intron 2 of 10)	ERVL-int|LTR|ERVL	6932	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
123633	chr19	54623921	54624600	+	0	NA	intron (NM_006669, intron 1 of 15).2	L1PA15-16|LINE|L1	-6151	NM_001081639	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
210839	chr7	100999401	101000030	+	0	NA	exon (NM_001164462, exon 2 of 12)	exon (NM_001164462, exon 2 of 12)	17893	NR_120519	102724094		NR_120519	ENSG00000227053	MUC12-AS1	-	MUC12 antisense RNA 1	ncRNA
71630	chr14	106722751	106723880	+	0	NA	Intergenic	Intergenic	127684	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
108063	chr18	59837501	59837800	+	0	NA	Intergenic	Intergenic	-62346	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
152403	chr22	20556071	20556230	+	0	NA	intron (NM_001003891, intron 5 of 17)	L1MD2|LINE|L1	48103	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
190512	chr5	180500401	180500600	+	0	NA	intron (NR_163437, intron 2 of 12)	AluYh3|SINE|Alu	6121	NR_163437	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
231064	chr9	129640321	129640730	+	0	NA	intron (NM_177999, intron 2 of 4)	intron (NM_177999, intron 2 of 4)	1626	NM_177999	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
221987	chr8	129999901	130000680	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	8163	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
130587	chr2	85852821	85854580	+	0	NA	5' UTR (NM_001354248, exon 1 of 6)	5' UTR (NM_001354248, exon 1 of 6)	471	NM_001354248	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
195721	chr6	39114301	39115550	+	0	NA	exon (NM_018322, exon 1 of 2)	exon (NM_018322, exon 1 of 2)	261	NM_018322	55776		NM_018322	ENSG00000112167	SAYSD1	C6orf64	SAYSVFN motif domain containing 1	protein-coding
200589	chr6	136567001	136567200	+	0	NA	intron (NM_005923, intron 26 of 29)	intron (NM_005923, intron 26 of 29)	-16281	NM_003980	9053		NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
116818	chr19	18556571	18556730	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1112	NM_001171948	79036		NM_024069	ENSG00000105700	KXD1	BORCS4|C10orf50|C19orf50|KXDL|MST096|MSTP096	KxDL motif containing 1	protein-coding
156898	chr22	42184901	42185100	+	0	NA	intron (NM_005650, intron 2 of 5)	intron (NM_005650, intron 2 of 5)	-40446	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
217569	chr8	29449651	29449750	+	0	NA	Intergenic	L1PA5|LINE|L1	-99016	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
15699	chr1	150997001	150997400	+	0	NA	3' UTR (NM_001376664, exon 10 of 10)	3' UTR (NM_001376664, exon 10 of 10)	9702	NM_001040217	55793		NM_018379	ENSG00000143409	MINDY1	FAM63A|MINDY-1	MINDY lysine 48 deubiquitinase 1	protein-coding
11691	chr1	91849151	91849450	+	0	NA	intron (NR_036634, intron 2 of 17)	L2a|LINE|L2	36851	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
214516	chr7	150482871	150483100	+	0	NA	Intergenic	L1M4|LINE|L1	-31887	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
106452	chr18	13726021	13727450	+	0	NA	promoter-TSS (NM_003799)	promoter-TSS (NM_003799)	62	NM_001378134	8731		NM_003799	ENSG00000101654	RNMT	CMT1|CMT1c|MET|Met|N7-MTase|RG7MT1|cm1p|hCMT1|hMet	RNA guanine-7 methyltransferase	protein-coding
54929	chr12	96198901	96199500	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	4825	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
233936	chrX	2373771	2373930	+	0	NA	intron (NM_145177, intron 3 of 6)	intron (NM_145177, intron 3 of 6)	126689	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
215390	chr7	157477651	157478150	+	0	NA	intron (NR_110157, intron 2 of 3)	intron (NR_110157, intron 2 of 3)	11669	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
69480	chr14	95462301	95463880	+	0	NA	intron (NM_001384284, intron 4 of 8)	AluSp|SINE|Alu	37450	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
127657	chr2	43158001	43160280	+	0	NA	Intergenic	Intergenic	-56695	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
62594	chr13	100088621	100089880	+	0	NA	promoter-TSS (NR_132422)	promoter-TSS (NR_132422)	157	NR_148027	5095		NM_000282	ENSG00000175198	PCCA	-	propionyl-CoA carboxylase subunit alpha	protein-coding
44574	chr11	108234521	108234780	+	0	NA	intron (NM_000051, intron 4 of 62)	AluJb|SINE|Alu	11121	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
77991	chr15	89474651	89474950	+	0	NA	intron (NM_001321041, intron 9 of 10)	(CCTT)n|Simple_repeat|Simple_repeat	21783	NM_001321041	51458		NM_016321	ENSG00000140519	RHCG	C15orf6|PDRC2|RHGK|SLC42A3	Rh family C glycoprotein	protein-coding
214831	chr7	151252521	151253130	+	0	NA	intron (NM_001003802, intron 2 of 13)	intron (NM_001003802, intron 2 of 13)	-4131	NM_001003801	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
129459	chr2	69567351	69568200	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-47604	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
222102	chr8	130802751	130802850	+	0	NA	intron (NM_001115, intron 14 of 17)	LTR16C|LTR|ERVL	238109	NM_001115	114		NM_001115	ENSG00000155897	ADCY8	AC8|ADCY3|HBAC1	adenylate cyclase 8	protein-coding
200660	chr6	137094451	137095130	+	0	NA	Intergenic	Intergenic	-49610	NM_014432	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
208101	chr7	56374201	56374530	+	0	NA	Intergenic	Intergenic	74010	NR_029420	650226		NR_029420		LOC650226	-	ankyrin repeat domain containing 26 pseudogene	pseudo
217680	chr8	30110971	30111130	+	0	NA	intron (NM_001128208, intron 3 of 3)	intron (NM_001128208, intron 3 of 3)	15642	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
100166	chr17	58622921	58623330	+	0	NA	intron (NM_198393, intron 3 of 32)	intron (NM_198393, intron 3 of 32)	68920	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
117186	chr19	19360871	19361900	+	0	NA	Intergenic	Intergenic	-24458	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
166249	chr3	112303551	112304630	+	0	NA	intron (NR_147411, intron 1 of 4)	HERV3-int|LTR|ERV1	1612	NR_147411	105374042		NR_147411	ENSG00000239482	LOC105374042	-	uncharacterized LOC105374042	ncRNA
179520	chr4	184819171	184819530	+	0	NA	intron (NM_001381885, intron 1 of 21)	AluSx1|SINE|Alu	-4226	NM_001381879	2180		NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long chain family member 1	protein-coding
176723	chr4	101299821	101300280	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	30364	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
64884	chr14	35366321	35366600	+	0	NA	Intergenic	Intergenic	38289	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
209293	chr7	75989651	75989750	+	0	NA	intron (NR_156695, intron 3 of 10)	intron (NR_156695, intron 3 of 10)	4895	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
127907	chr2	46301721	46301980	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	4443	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
80469	chr16	2696301	2696930	+	0	NA	intron (NM_018992, intron 2 of 5)	CpG	14092	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
198262	chr6	99522871	99523230	+	0	NA	intron (NM_001195131, intron 1 of 3)	AluJb|SINE|Alu	2001	NM_001195131	100130890		NM_001195131	ENSG00000279170	TSTD3	-	thiosulfate sulfurtransferase like domain containing 3	protein-coding
141372	chr2	240692771	240692930	+	0	NA	intron (NM_198998, intron 2 of 3)	intron (NM_198998, intron 2 of 3)	984	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
50029	chr12	43760401	43760800	+	0	NA	intron (NM_001351338, intron 1 of 11)	L2a|LINE|L2	1649	NM_016123	51135		NM_016123	ENSG00000198001	IRAK4	IMD67|IPD1|IRAK-4|NY-REN-64|REN64	interleukin 1 receptor associated kinase 4	protein-coding
77782	chr15	86610071	86610430	+	0	NA	intron (NM_152336, intron 22 of 24)	intron (NM_152336, intron 22 of 24)	-293282	NR_046012	727915		NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
57112	chr12	121094901	121095100	+	0	NA	Intergenic	AluSx|SINE|Alu	-37876	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
110209	chr19	1747271	1747900	+	0	NA	Intergenic	Intergenic	-5921	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
63300	chr13	113984451	113985450	+	0	NA	intron (NM_001320822, intron 22 of 23).2	MLT1A0|LTR|ERVL-MaLR	-10874	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
31521	chr10	96829271	96829630	+	0	NA	promoter-TSS (NR_030338)	promoter-TSS (NR_030338)	-686	NR_030338	693192		NR_030338	ENSG00000207976	MIR607	MIRN607|hsa-mir-607	microRNA 607	ncRNA
81246	chr16	4606701	4606900	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	8088	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
35529	chr11	1567201	1567600	+	0	NA	intron (NM_004420, intron 1 of 6)	intron (NM_004420, intron 1 of 6)	4871	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
25775	chr10	11150301	11151600	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-13931	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
84271	chr16	30061601	30062130	+	0	NA	intron (NM_001365304, intron 4 of 13)	intron (NM_001365304, intron 4 of 13)	-2414	NM_184043	226		NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase, fructose-bisphosphate A	protein-coding
98448	chr17	46943751	46944450	+	0	NA	intron (NM_001321133, intron 6 of 6)	intron (NM_001321133, intron 6 of 6)	20940	NM_001321133	9570		NM_004287	ENSG00000108433	GOSR2	Bos1|EPM6|GS27|MYOS	golgi SNAP receptor complex member 2	protein-coding
176624	chr4	99570501	99570700	+	0	NA	intron (NM_001300785, intron 1 of 17)	MLT1D|LTR|ERVL-MaLR	6470	NM_000253	4547		NM_000253	ENSG00000138823	MTTP	ABL|MTP	microsomal triglyceride transfer protein	protein-coding
149166	chr21	17815621	17815880	+	0	NA	intron (NM_017447, intron 2 of 4)	AluSp|SINE|Alu	3606	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
25614	chr10	8070651	8071150	+	0	NA	intron (NM_001002295, intron 5 of 5)	intron (NM_001002295, intron 5 of 5)	16212	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
191963	chr6	16143071	16143230	+	0	NA	exon (NM_013262, exon 4 of 7)	exon (NM_013262, exon 4 of 7)	1594	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
173067	chr4	6172421	6172950	+	0	NA	intron (NM_144720, intron 1 of 12)	intron (NM_144720, intron 1 of 12)	21934	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
72329	chr15	31268001	31268330	+	0	NA	Intergenic	Intergenic	-37303	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
66768	chr14	64539701	64540930	+	0	NA	promoter-TSS (NR_110550)	promoter-TSS (NR_110550)	53	NR_110550	102723809		NR_110550	ENSG00000259116	HSPA2-AS1	-	HSPA2 and ZBTB1 antisense RNA 1	ncRNA
174557	chr4	40216301	40217330	+	0	NA	intron (NM_001278361, intron 2 of 3)	MER113A|DNA|hAT-Charlie	19784	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
239394	chrY	21670571	21670730	+	0	NA	Intergenic	Intergenic	-75984	NR_001537	83868		NM_031931	ENSG00000184991	TTTY13	NCRNA00136|TTY13	testis expressed transcript, Y-linked 13	ncRNA
155280	chr22	38088721	38088980	+	0	NA	exon (NM_025045, exon 10 of 14)	exon (NM_025045, exon 10 of 14)	-4666	NM_013356	23539		NM_013356	ENSG00000100156	SLC16A8	MCT3|REMP	solute carrier family 16 member 8	protein-coding
125575	chr2	16613571	16613730	+	0	NA	intron (NM_030797, intron 2 of 11)	intron (NM_030797, intron 2 of 11)	52184	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
238605	chrX	153927701	153928930	+	0	NA	TTS (NM_001256119)	TTS (NM_001256119)	-2051	NM_001666	393		NM_001666	ENSG00000089820	ARHGAP4	C1|RGC1|RhoGAP4|SrGAP4|p115	Rho GTPase activating protein 4	protein-coding
231408	chr9	131045321	131045850	+	0	NA	exon (NM_006059, exon 8 of 28)	exon (NM_006059, exon 8 of 28)	36411	NM_006059	10319		NM_006059	ENSG00000050555	LAMC3	OCCM	laminin subunit gamma 3	protein-coding
31670	chr10	97428501	97429400	+	0	NA	intron (NM_001317079, intron 1 of 3)	intron (NM_001317079, intron 1 of 3)	1273	NM_001317079	5223		NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
105484	chr17	83075751	83075850	+	0	NA	Intergenic	Intergenic	-3809	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
196574	chr6	44149101	44149300	+	0	NA	intron (NM_001318792, intron 15 of 23)	intron (NM_001318792, intron 15 of 23)	-9620	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
28755	chr10	62020221	62020480	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-29007	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
102813	chr17	76444571	76444830	+	0	NA	intron (NM_022066, intron 1 of 17)	intron (NM_022066, intron 1 of 17)	8452	NM_022066	63893		NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin conjugating enzyme E2 O	protein-coding
45290	chr11	118051251	118052300	+	0	NA	intron (NM_001354434, intron 2 of 5)	intron (NM_001354434, intron 2 of 5)	-25237	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
20084	chr1	186348371	186348530	+	0	NA	intron (NM_003292, intron 21 of 50)	MER11A|LTR|ERVK	26803	NM_003292	7175		NM_003292	ENSG00000047410	TPR	MRT79	translocated promoter region, nuclear basket protein	protein-coding
2224	chr1	8853651	8853950	+	0	NA	Intergenic	L1M3|LINE|L1	12790	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
200948	chr6	139172921	139174800	+	0	NA	intron (NM_016217, intron 2 of 3)	intron (NM_016217, intron 2 of 3)	38780	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
13252	chr1	112708601	112708800	+	0	NA	Intergenic	Intergenic	-1297	NM_001042678	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
112205	chr19	5685901	5688230	+	0	NA	intron (NM_001267868, intron 6 of 8)	CpG-13469	-3230	NM_033643	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
149198	chr21	24046971	24047130	+	0	NA	Intergenic	Intergenic	274327	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
193583	chr6	30683721	30684080	+	0	NA	intron (NM_133471, intron 1 of 2).5	intron (NM_133471, intron 1 of 2).5	2745	NM_133471	170954		NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding
234015	chrX	3704801	3705000	+	0	NA	intron (NM_005044, intron 1 of 8)	L1MA6|LINE|L1	8749	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
238955	chrX	155057251	155057750	+	0	NA	3' UTR (NM_023934, exon 5 of 5)	3' UTR (NM_023934, exon 5 of 5)	13636	NM_001018025	4515		NM_014221	ENSG00000214827	MTCP1	P13MTCP1|TCL1C|p8MTCP1	mature T cell proliferation 1	protein-coding
172253	chr4	1378821	1379480	+	0	NA	intron (NM_001317935, intron 10 of 13)	intron (NM_001317935, intron 10 of 13)	27292	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
232884	chr9	136836401	136836700	+	0	NA	intron (NM_024718, intron 8 of 14)	intron (NM_024718, intron 8 of 14)	5593	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
235413	chrX	45757401	45757600	+	0	NA	Intergenic	L1ME1|LINE|L1	-10376	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
13434	chr1	114334121	114334650	+	0	NA	Intergenic	Intergenic	176818	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
66539	chr14	61775201	61775400	+	0	NA	intron (NM_003082, intron 4 of 9)	AluSx1|SINE|Alu	12880	NM_003082	6617		NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
45265	chr11	118004001	118004200	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	17706	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
145281	chr20	41008301	41009050	+	0	NA	intron (NR_145525, intron 2 of 2)	intron (NR_145525, intron 2 of 2)	-20147	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
97147	chr17	42564671	42564830	+	0	NA	exon (NM_001042529, exon 5 of 10)	exon (NM_001042529, exon 5 of 10)	-2310	NM_198205	6945		NM_013383	ENSG00000108788	MLX	MAD7|MXD7|TCFL4|TF4|bHLHd13	MAX dimerization protein MLX	protein-coding
163763	chr3	52372571	52373700	+	0	NA	intron (NM_015512, intron 44 of 77)	ORSL|DNA|hAT-Tip100	36873	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
146737	chr20	50790351	50791200	+	0	NA	Intergenic	Intergenic	-4119	NM_001010974	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
79045	chr16	81721	82830	+	0	NA	intron (NM_001015054, intron 2 of 3)	intron (NM_001015054, intron 2 of 3)	4050	NM_001015052	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
222474	chr8	140159671	140159900	+	0	NA	intron (NR_164662, intron 16 of 22)	intron (NR_164662, intron 16 of 22)	-59250	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
37484	chr11	18393151	18393250	+	0	NA	Intergenic	MER21C|LTR|ERVL	-1189	NM_001165416	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
202585	chr6	158697951	158698250	+	0	NA	intron (NM_001318745, intron 3 of 14)	intron (NM_001318745, intron 3 of 14)	34697	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
155334	chr22	38220971	38222330	+	0	NA	exon (NM_012264, exon 9 of 9)	exon (NM_012264, exon 9 of 9)	3070	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
156866	chr22	42077951	42078050	+	0	NA	exon (NM_001002034, exon 3 of 3)	exon (NM_001002034, exon 3 of 3)	-1691	NR_146715	91689		NM_033318	ENSG00000183172	SMDT1	C22orf32|DDDD|EMRE	single-pass membrane protein with aspartate rich tail 1	protein-coding
204306	chr7	2690651	2690950	+	0	NA	intron (NM_001321766, intron 1 of 6)	intron (NM_001321766, intron 1 of 6)	2598	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
187403	chr5	141923351	141924750	+	0	NA	intron (NM_014773, intron 1 of 11)	CpG	179	NM_014773	9812		NM_014773	ENSG00000081791	DELE1	DELE|DELE1(L)|KIAA0141	DAP3 binding cell death enhancer 1	protein-coding
8541	chr1	41025021	41025280	+	0	NA	intron (NR_037868, intron 1 of 3)	LTR87|LTR|ERVL?	-3395	NM_001168247	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
155001	chr22	37316621	37317780	+	0	NA	Intergenic	Intergenic	34692	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
111422	chr19	3782771	3783030	+	0	NA	intron (NM_139355, intron 7 of 13)	intron (NM_139355, intron 7 of 13)	3481	NM_139355	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
199670	chr6	122464471	122464830	+	0	NA	intron (NM_020755, intron 1 of 9)	HAL1b|LINE|L1	7157	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
24984	chr10	3091501	3091900	+	0	NA	intron (NM_001345944, intron 2 of 21)	AluSz|SINE|Alu	-12909	NM_001323074	5214		NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
101705	chr17	68496871	68497400	+	0	NA	intron (NM_001278433, intron 1 of 10)	MER58B|DNA|hAT-Charlie	-14645	NM_212471	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
85997	chr16	57464201	57464400	+	0	NA	intron (NM_032940, intron 2 of 8)	L2c|LINE|L2	1621	NM_032940	5432		NM_002694	ENSG00000102978	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	RNA polymerase II subunit C	protein-coding
1965	chr1	6589571	6590500	+	0	NA	TTS (NM_001278648)	TTS (NM_001278648)	10041	NM_001278647	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
125462	chr2	12271171	12271900	+	0	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	72405	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
100198	chr17	59103301	59103700	+	0	NA	intron (NR_148347, intron 1 of 22)	AluSg|SINE|Alu	3380	NM_001353082	4591		NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
119433	chr19	40364971	40365130	+	0	NA	intron (NM_001291311, intron 1 of 12)	intron (NM_001291311, intron 1 of 12)	-4796	NR_106854	102465477		NR_106854	ENSG00000275652	MIR6796	hsa-mir-6796	microRNA 6796	ncRNA
67731	chr14	73538871	73539400	+	0	NA	intron (NM_001037161, intron 1 of 2)	intron (NM_001037161, intron 1 of 2)	1992	NM_001037161	641371		NM_001037161	ENSG00000184227	ACOT1	ACH2|CTE-1|LACH2	acyl-CoA thioesterase 1	protein-coding
36074	chr11	2985351	2985650	+	0	NA	intron (NM_001369380, intron 1 of 14).2	L1MA8|LINE|L1	5603	NM_001369379	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
163664	chr3	52221801	52222700	+	0	NA	exon (NM_017442, exon 2 of 2)	exon (NM_017442, exon 2 of 2)	3913	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
145000	chr20	37526051	37526480	+	0	NA	intron (NM_001167820, intron 1 of 2)	intron (NM_001167820, intron 1 of 2)	1467	NM_001167821	10904		NM_006698	ENSG00000166619	BLCAP	BC10	BLCAP apoptosis inducing factor	protein-coding
169779	chr3	172716671	172716830	+	0	NA	Intergenic	Intergenic	-5683	NM_020792	57552		NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
7881	chr1	36449821	36451200	+	0	NA	promoter-TSS (NM_206837)	promoter-TSS (NM_206837)	-25	NM_001330493	127700		NM_145047	ENSG00000116885	OSCP1	C1orf102|NOR1	organic solute carrier partner 1	protein-coding
65145	chr14	45093401	45093600	+	0	NA	intron (NM_017922, intron 1 of 13)	AluSx3|SINE|Alu	9384	NM_017922	55015		NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
201137	chr6	142900421	142901100	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	44416	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
131139	chr2	91504621	91505680	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	154799	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
130806	chr2	86959421	86959680	+	0	NA	intron (NM_001382344, intron 6 of 22)	AluSc|SINE|Alu	17432	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
181395	chr5	40684421	40685080	+	0	NA	intron (NM_000958, intron 2 of 2)	intron (NM_000958, intron 2 of 2)	4835	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
179377	chr4	183503671	183505400	+	0	NA	promoter-TSS (NR_033995)	promoter-TSS (NR_033995)	-20	NR_033995	389247		NR_033995		ING2-DT	-	ING2 divergent transcript	ncRNA
50197	chr12	46184671	46185700	+	0	NA	3' UTR (NM_001077484, exon 17 of 17)	3' UTR (NM_001077484, exon 17 of 17)	81331	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
166027	chr3	108406621	108407180	+	0	NA	intron (NM_014981, intron 33 of 41)	MamTip2|DNA|hAT-Tip100	95115	NM_001282557	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
171228	chr3	195776651	195776980	+	0	NA	intron (NM_138297, intron 1 of 22)	intron (NM_138297, intron 1 of 22)	35114	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
162302	chr3	47415551	47415650	+	0	NA	intron (NM_001320044, intron 15 of 19)	intron (NM_001320044, intron 15 of 19)	34579	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
144894	chr20	36936271	36936430	+	0	NA	intron (NM_001363733, intron 3 of 15)	AluJo|SINE|Alu	15358	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
238861	chrX	154511171	154512150	+	0	NA	intron (NM_021806, intron 3 of 8)	MLT1C-int|LTR|ERVL-MaLR	4572	NM_001171133	60343		NM_021806	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	FAM3 metabolism regulating signaling molecule A	protein-coding
37767	chr11	32122101	32122530	+	0	NA	Intergenic	Intergenic	21597	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
7363	chr1	32802521	32803130	+	0	NA	intron (NM_003680, intron 4 of 12)	AluSz|SINE|Alu	-14617	NM_001256121	64766		NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding
153647	chr22	28795051	28796180	+	0	NA	exon (NM_001079539, exon 6 of 6)	exon (NM_001079539, exon 6 of 6)	4957	NM_001079539	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
18381	chr1	161386301	161386980	+	0	NA	Intergenic	MER57F|LTR|ERV1	-18764	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
47332	chr12	1804121	1805380	+	0	NA	intron (NM_172364, intron 29 of 37)	MLT1J|LTR|ERVL-MaLR	-15517	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
183918	chr5	87395301	87395800	+	0	NA	intron (NM_001239, intron 7 of 8)	intron (NM_001239, intron 7 of 8)	17354	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
60196	chr13	40390421	40390750	+	0	NA	intron (NR_024506, intron 5 of 5)	MIRc|SINE|MIR	90421	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
107105	chr18	35058101	35058500	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	16887	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
29139	chr10	68576221	68576750	+	0	NA	intron (NM_030625, intron 2 of 11)	AluJo|SINE|Alu	16148	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
212887	chr7	130880451	130881300	+	0	NA	TTS (NR_034120)	TTS (NR_034120)	-3336	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
22	chr1	37421	38350	+	0	NA	Intergenic	Intergenic	-1804	NR_026818	645520		NR_026818	ENSG00000237613	FAM138A	F379|FAM138F	family with sequence similarity 138 member A	ncRNA
164312	chr3	57689301	57689850	+	0	NA	intron (NM_152678, intron 1 of 19)	intron (NM_152678, intron 1 of 19)	3502	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
148498	chr20	64071301	64071850	+	0	NA	intron (NM_198723, intron 9 of 10)	intron (NM_198723, intron 9 of 10)	5435	NR_106871	102466741		NR_106871	ENSG00000274034	MIR6813	hsa-mir-6813	microRNA 6813	ncRNA
141695	chr2	241818301	241818700	+	0	NA	Intergenic	Intergenic	7104	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
158768	chr3	9402471	9403000	+	0	NA	intron (NM_001349451, intron 1 of 25)	intron (NM_001349451, intron 1 of 25)	5120	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
175527	chr4	74446371	74447130	+	0	NA	exon (NM_001657, exon 2 of 6)	exon (NM_001657, exon 2 of 6)	1614	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
202316	chr6	157282621	157282880	+	0	NA	Intergenic	Intergenic	40769	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
163200	chr3	50229451	50229550	+	0	NA	intron (NM_001282620, intron 1 of 8)	intron (NM_001282620, intron 1 of 8)	-1276	NM_001282617	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
194939	chr6	35213471	35214680	+	0	NA	5' UTR (NM_001303136, exon 1 of 22)	5' UTR (NM_001303136, exon 1 of 22)	119	NM_001303136	222663		NM_152753	ENSG00000146197	SCUBE3	CEGF3|SSFSC2	signal peptide, CUB domain and EGF like domain containing 3	protein-coding
53930	chr12	71752871	71753400	+	0	NA	Intergenic	L2c|LINE|L2	-1728	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
167421	chr3	129022301	129023150	+	0	NA	intron (NM_024768, intron 2 of 7)	intron (NM_024768, intron 2 of 7)	-18723	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
122850	chr19	50474271	50475330	+	0	NA	intron (NM_001308429, intron 3 of 4)	intron (NM_001308429, intron 3 of 4)	-1707	NM_206538	284361		NM_175063	ENSG00000161671	EMC10	C19orf63|HSM1|HSS1|NEDDFAS	ER membrane protein complex subunit 10	protein-coding
65644	chr14	52320551	52320850	+	0	NA	intron (NM_000956, intron 1 of 1)	intron (NM_000956, intron 1 of 1)	6388	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
227048	chr9	83972401	83972800	+	0	NA	intron (NM_031263, intron 10 of 16)	intron (NM_031263, intron 10 of 16)	-2743	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
215489	chr7	158376261	158377400	+	0	NA	intron (NM_130842, intron 1 of 21)	LTR1B|LTR|ERV1	155983	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
233832	chrX	1491621	1492760	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-38428	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
170447	chr3	185908721	185909300	+	0	NA	Intergenic	AluSz|SINE|Alu	29004	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
12549	chr1	108658521	108658780	+	0	NA	intron (NM_144584, intron 2 of 7)	MER31B|LTR|ERV1	2443	NM_001102592	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
219397	chr8	70577701	70578100	+	0	NA	intron (NM_001317804, intron 11 of 11)	MER52A|LTR|ERV1	29769	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
137739	chr2	197837371	197837530	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	32857	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
188596	chr5	157179001	157179500	+	0	NA	Intergenic	Intergenic	-1590	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
207737	chr7	48088531	48089980	+	0	NA	promoter-TSS (NM_003364)	promoter-TSS (NM_003364)	1	NM_001287430	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
79232	chr16	377951	378530	+	0	NA	intron (NM_021259, intron 1 of 12)	CpG	3738	NM_021259	58986		NM_021259	ENSG00000129925	PGAP6	GPI-PLA2|M83|TMEM6|TMEM8|TMEM8A	post-GPI attachment to proteins 6	protein-coding
232005	chr9	133355051	133355150	+	0	NA	intron (NM_001280787, intron 1 of 7)	intron (NM_001280787, intron 1 of 7)	1385	NM_001280787	6834		NM_003172	ENSG00000148290	SURF1	CMT4K|MC4DN1|SHY1	SURF1 cytochrome c oxidase assembly factor	protein-coding
7894	chr1	36516251	36516630	+	0	NA	Intergenic	Intergenic	-33126	NM_156039	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
74850	chr15	63523421	63523680	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	18957	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
230303	chr9	127951871	127952800	+	0	NA	intron (NM_001035254, intron 3 of 10)	intron (NM_001035254, intron 3 of 10)	-1621	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
118133	chr19	34962151	34962780	+	0	NA	intron (NM_175872, intron 1 of 3)	MER89|LTR|ERV1	1764	NM_175872	126375		NM_175872	ENSG00000180884	ZNF792	-	zinc finger protein 792	protein-coding
129325	chr2	68734451	68735400	+	0	NA	promoter-TSS (NM_001364821)	promoter-TSS (NM_001364821)	114	NM_001364820	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
104803	chr17	81741451	81741650	+	0	NA	Intergenic	Intergenic	29266	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
187291	chr5	141590621	141591080	+	0	NA	intron (NM_005219, intron 1 of 27)	L2c|LINE|L2	28150	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
197555	chr6	79250301	79250580	+	0	NA	Intergenic	MER106B|DNA|hAT-Charlie	-15758	NM_004242	9324		NM_004242	ENSG00000118418	HMGN3	PNAS-24|PNAS-25|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
79454	chr16	720901	722730	+	0	NA	TTS (NM_001378031)	TTS (NM_001378031)	669	NM_023933	65990		NM_023933	ENSG00000103254	ANTKMT	ANT-KMT|C16orf24|FAM173A	adenine nucleotide translocase lysine methyltransferase	protein-coding
22374	chr1	218283401	218283600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1793	NM_016052	51018		NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
154295	chr22	31755201	31755400	+	0	NA	intron (NR_146296, intron 2 of 42)	intron (NR_146296, intron 2 of 42)	1277	NM_001369903	9681		NM_014662	ENSG00000100150	DEPDC5	DEE111|DEP.5|FFEVF|FFEVF1|FPEVF	DEP domain containing 5, GATOR1 subcomplex subunit	protein-coding
114215	chr19	11440321	11440580	+	0	NA	intron (NM_001001329, intron 5 of 17)	AluY|SINE|Alu	-4668	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
174682	chr4	41934571	41936000	+	0	NA	promoter-TSS (NM_018126)	promoter-TSS (NM_018126)	-144	NM_018126	55161		NM_018126	ENSG00000109133	TMEM33	1600019D15Rik|Pom33|SHINC-3|SHINC3	transmembrane protein 33	protein-coding
3198	chr1	13746751	13746850	+	0	NA	intron (NM_001135610, intron 5 of 7)	AluJb|SINE|Alu	-2615	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
163081	chr3	50085371	50085530	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3469	NR_036627	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
58640	chr12	132509451	132510330	+	0	NA	non-coding (NR_168498, exon 4 of 4)	non-coding (NR_168498, exon 4 of 4)	4484	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171002	chr3	194687401	194688730	+	0	NA	exon (NM_153690, exon 1 of 1)	exon (NM_153690, exon 1 of 1)	2182	NM_153690	131583		NM_153690	ENSG00000185112	FAM43A	-	family with sequence similarity 43 member A	protein-coding
45805	chr11	119341471	119342750	+	0	NA	intron (NM_031433, intron 11 of 14)	intron (NM_031433, intron 11 of 14)	-1227	NM_001278431	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
41499	chr11	66249721	66249980	+	0	NA	Intergenic	L2b|LINE|L2	-7444	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
45491	chr11	118620971	118621950	+	0	NA	intron (NM_001144759, intron 4 of 20)	CpG	13845	NM_001144759	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
57772	chr12	122990001	122990200	+	0	NA	intron (NM_001384662, intron 15 of 23)	intron (NM_001384662, intron 15 of 23)	10040	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
230009	chr9	126985001	126985200	+	0	NA	intron (NM_001190729, intron 4 of 17)	MLT1H|LTR|ERVL-MaLR	22875	NM_001366401	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
100007	chr17	57875401	57875600	+	0	NA	intron (NM_001292025, intron 3 of 10)	intron (NM_001292025, intron 3 of 10)	-25456	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
46636	chr11	128684901	128685350	+	0	NA	intron (NR_135072, intron 1 of 1)	intron (NR_135072, intron 1 of 1)	-1410	NM_001271012	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
193231	chr6	29892101	29892300	+	0	NA	Intergenic	Intergenic	4627	NR_001434	3136		NR_001434		HLA-H	HLAHP	major histocompatibility complex, class I, H (pseudogene)	pseudo
137951	chr2	201133551	201134180	+	0	NA	intron (NR_147241, intron 2 of 4)	AluY|SINE|Alu	1084	NM_001202518	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
21082	chr1	203317471	203317830	+	0	NA	Intergenic	(GTTCACA)n|Simple_repeat|Simple_repeat	12131	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
84470	chr16	30469371	30469930	+	0	NA	Intergenic	L1MB7|LINE|L1	-3092	NM_002209	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
210928	chr7	101234801	101235780	+	0	NA	intron (NM_014343, intron 1 of 4)	AluJo|SINE|Alu	2512	NM_014343	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
145533	chr20	44133471	44133630	+	0	NA	intron (NM_020433, intron 2 of 5)	intron (NM_020433, intron 2 of 5)	53638	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
71510	chr14	106094721	106094980	+	0	NA	Intergenic	Intergenic	-122581	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
194751	chr6	33904121	33906150	+	0	NA	Intergenic	Intergenic	6000	NR_106982	102466816		NR_106982	ENSG00000276824	MIR7159	hsa-mir-7159	microRNA 7159	ncRNA
128159	chr2	48448271	48449380	+	0	NA	intron (NM_001193475, intron 1 of 19)	MER58A|DNA|hAT-Charlie	8056	NM_001193475	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
32457	chr10	102638471	102639030	+	0	NA	Intergenic	AluJo|SINE|Alu	-5729	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
209401	chr7	76326971	76327130	+	0	NA	3' UTR (NM_012479, exon 2 of 2)	3' UTR (NM_012479, exon 2 of 2)	24377	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
172748	chr4	2845301	2845680	+	0	NA	intron (NM_001286645, intron 1 of 17)	intron (NM_001286645, intron 1 of 17)	1340	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
19829	chr1	182843771	182844430	+	0	NA	intron (NM_001357, intron 3 of 27)	AluSz|SINE|Alu	-4509	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
137601	chr2	197289771	197290480	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	12394	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
159287	chr3	12974771	12975330	+	0	NA	intron (NM_001134382, intron 1 of 13)	MIRb|SINE|MIR	-7320	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
181672	chr5	50437171	50437530	+	0	NA	intron (NM_198449, intron 1 of 8)	L1MC4|LINE|L1	3938	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
89874	chr16	89643621	89644380	+	0	NA	TTS (NM_001083314)	TTS (NM_001083314)	13708	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
90123	chr16	90118751	90119050	+	0	NA	intron (NR_126161, intron 3 of 3)	L1MC4|LINE|L1	16636	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
25115	chr10	3971451	3972050	+	0	NA	Intergenic	Intergenic	-19410	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
107564	chr18	48816451	48816550	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	126307	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
102286	chr17	75318651	75319250	+	0	NA	3' UTR (NM_002086, exon 6 of 6)	3' UTR (NM_002086, exon 6 of 6)	-29501	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
134163	chr2	134244851	134244950	+	0	NA	intron (NM_001371457, intron 1 of 16)	MER20|DNA|hAT-Charlie	-9172	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
110584	chr19	2158921	2159450	+	0	NA	Intergenic	AluSc5|SINE|Alu	-4748	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
91086	chr17	3514671	3515230	+	0	NA	intron (NM_145068, intron 16 of 17)	intron (NM_145068, intron 16 of 17)	-1098	NM_001321337	84690		NM_032598	ENSG00000141255	SPATA22	NYD-SP20|NYDSP20	spermatogenesis associated 22	protein-coding
83159	chr16	23461771	23462350	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-8871	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
149007	chr21	14527051	14527950	+	0	NA	intron (NM_001286523, intron 1 of 8)	intron (NM_001286523, intron 1 of 8)	18815	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
90788	chr17	2089271	2090300	+	0	NA	intron (NM_001256827, intron 6 of 11)	intron (NM_001256827, intron 6 of 11)	-1024	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
6221	chr1	27496801	27497000	+	0	NA	Intergenic	Intergenic	-6733	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
224112	chr9	4620121	4620480	+	0	NA	intron (NM_001353491, intron 10 of 14)	intron (NM_001353491, intron 10 of 14)	41923	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
101442	chr17	67434901	67437400	+	0	NA	intron (NM_181671, intron 1 of 9)	AluJr|SINE|Alu	-35339	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
175845	chr4	78769601	78769800	+	0	NA	Intergenic	Intergenic	-6650	NM_017593	55589		NM_017593	ENSG00000138756	BMP2K	BIKE|HRIHFB2017	BMP2 inducible kinase	protein-coding
137865	chr2	200828121	200828880	+	0	NA	Intergenic	Intergenic	16114	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
173106	chr4	6363051	6363150	+	0	NA	intron (NM_001206995, intron 6 of 9)	intron (NM_001206995, intron 6 of 9)	18768	NM_181876	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
148466	chr20	64037501	64038100	+	0	NA	intron (NM_001348090, intron 4 of 6)	intron (NM_001348090, intron 4 of 6)	4073	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
130902	chr2	87457521	87458430	+	0	NA	intron (NR_024206, intron 1 of 1)	intron (NR_024206, intron 1 of 1)	2548	NR_024206	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
158796	chr3	9691271	9691430	+	0	NA	intron (NM_001077526, intron 17 of 17)	intron (NM_001077526, intron 17 of 17)	-12483	NM_001308388	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
118716	chr19	38227851	38228180	+	0	NA	intron (NM_001363579, intron 1 of 11)	intron (NM_001363579, intron 1 of 11)	1680	NM_001363579	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
221935	chr8	129883121	129883380	+	0	NA	intron (NM_001353311, intron 4 of 13)	MER20|DNA|hAT-Charlie	56561	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
175370	chr4	70623421	70623750	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-5159	NM_031889	10117		NM_031889	ENSG00000132464	ENAM	ADAI|AI1C|AIH2	enamelin	protein-coding
236460	chrX	71576771	71577130	+	0	NA	Intergenic	Intergenic	-1074	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
38700	chr11	46618971	46619330	+	0	NA	intron (NM_001205121, intron 2 of 16)	intron (NM_001205121, intron 2 of 16)	1597	NM_001346311	9776		NM_014741	ENSG00000175224	ATG13	KIAA0652|PARATARG8	autophagy related 13	protein-coding
60358	chr13	40910171	40910850	+	0	NA	intron (NR_038259, intron 1 of 5)	AluJb|SINE|Alu	11240	NR_038258	100616668		NR_038258		TPTE2P5	-	TPTE2 pseudogene 5	pseudo
200204	chr6	131203421	131203950	+	0	NA	intron (NR_164834, intron 8 of 9)	L1ME3G|LINE|L1	-46719	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
236791	chrX	79143851	79145150	+	0	NA	promoter-TSS (NM_032553)	promoter-TSS (NM_032553)	-188	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
39752	chr11	61834501	61835200	+	0	NA	intron (NM_004265, intron 1 of 11)	intron (NM_004265, intron 1 of 11)	6550	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
212506	chr7	128666201	128666400	+	0	NA	Intergenic	Intergenic	-5966	NM_001128926	346653		NM_001012454	ENSG00000205085	GARIN1A	FAM137B|FAM71F2|GARI	golgi associated RAB2 interactor 1A	protein-coding
214385	chr7	149775551	149776650	+	0	NA	promoter-TSS (NR_163594)	promoter-TSS (NR_163594)	58	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
127582	chr2	42770601	42770800	+	0	NA	intron (NM_012205, intron 4 of 9)	intron (NM_012205, intron 4 of 9)	-6439	NM_148962	165140		NM_148962	ENSG00000162881	OXER1	GPCR|GPR170|TG1019	oxoeicosanoid receptor 1	protein-coding
32935	chr10	110303501	110303700	+	0	NA	intron (NM_005871, intron 1 of 5)	intron (NM_005871, intron 1 of 5)	1320	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
91273	chr17	4082771	4082930	+	0	NA	intron (NM_015113, intron 16 of 54)	AluSq2|SINE|Alu	60180	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
156962	chr22	42367571	42367930	+	0	NA	intron (NR_120595, intron 1 of 1)	intron (NR_120595, intron 1 of 1)	1458	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
130652	chr2	86190721	86190980	+	0	NA	intron (NM_001100169, intron 1 of 14)	AluSc8|SINE|Alu	2258	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
31903	chr10	100358451	100358550	+	0	NA	intron (NM_005063, intron 5 of 5)	AluYb8|SINE|Alu	11267	NM_005063	6319		NM_005063	ENSG00000099194	SCD	FADS5|MSTP008|SCD1|SCDOS|hSCD1	stearoyl-CoA desaturase	protein-coding
188568	chr5	157107001	157107830	+	0	NA	intron (NM_032782, intron 1 of 6)	intron (NM_032782, intron 1 of 6)	1629	NM_032782	84868		NM_032782	ENSG00000135077	HAVCR2	CD366|HAVcr-2|KIM-3|SPTCL|TIM3|TIMD-3|TIMD3|Tim-3	hepatitis A virus cellular receptor 2	protein-coding
225276	chr9	34441071	34441430	+	0	NA	intron (NM_001184942, intron 1 of 5)	intron (NM_001184942, intron 1 of 5)	17320	NM_001184942	203259		NM_147202	ENSG00000164970	FAM219A	C9orf25	family with sequence similarity 219 member A	protein-coding
161259	chr3	39258821	39259280	+	0	NA	Intergenic	Intergenic	20986	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
69281	chr14	93073471	93073830	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	6198	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
111786	chr19	4443551	4444280	+	0	NA	TTS (NM_005483)	TTS (NM_005483)	-2063	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
195677	chr6	38172101	38172380	+	0	NA	3' UTR (NM_001099272, exon 11 of 11)	3' UTR (NM_001099272, exon 11 of 11)	-309356	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
84609	chr16	30677371	30677730	+	0	NA	Intergenic	L2|LINE|L2	19119	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
116940	chr19	18846051	18846380	+	0	NA	intron (NM_001297549, intron 2 of 23)	intron (NM_001297549, intron 2 of 23)	14256	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
149834	chr21	35034401	35034600	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	4926	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
115095	chr19	14253601	14254000	+	0	NA	Intergenic	Intergenic	-47631	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
155015	chr22	37417821	37418080	+	0	NA	intron (NM_052906, intron 1 of 2)	intron (NM_052906, intron 1 of 2)	9520	NR_110512	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
9484	chr1	51058871	51059050	+	0	NA	promoter-TSS (NR_039617)	promoter-TSS (NR_039617)	-877	NR_039617	100616189		NR_039617	ENSG00000265538	MIR4421	-	microRNA 4421	ncRNA
154413	chr22	35333051	35333350	+	0	NA	intron (NR_156428, intron 8 of 13)	intron (NR_156428, intron 8 of 13)	-2440	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
25534	chr10	7388371	7389000	+	0	NA	intron (NM_001029880, intron 1 of 20)	L2a|LINE|L2	20656	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
114493	chr19	12761551	12761650	+	0	NA	Intergenic	AluSc8|SINE|Alu	9809	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
98950	chr17	48640201	48640780	+	0	NA	Intergenic	Intergenic	-7931	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
101711	chr17	68514151	68514630	+	0	NA	intron (NM_001369390, intron 1 of 10)	intron (NM_001369390, intron 1 of 10)	-1004	NM_001276290	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
186809	chr5	139381801	139382500	+	0	NA	intron (NM_152685, intron 2 of 14)	intron (NM_152685, intron 2 of 14)	1147	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
99902	chr17	56870101	56870530	+	0	NA	TTS (NM_003647)	TTS (NM_003647)	14598	NR_027025	246754		NR_027025		MTVR2	-	mouse mammary tumor virus receptor homolog 2	pseudo
111264	chr19	3537551	3538380	+	0	NA	3' UTR (NM_016263, exon 14 of 14)	3' UTR (NM_016263, exon 14 of 14)	-1192	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
130535	chr2	85648501	85648980	+	0	NA	intron (NR_046347, intron 12 of 12)	intron (NR_046347, intron 12 of 12)	19459	NM_001367281	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
125224	chr2	10331021	10333100	+	0	NA	intron (NM_001258357, intron 1 of 4)	intron (NM_001258357, intron 1 of 4)	1897	NM_001258357	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
221502	chr8	124563301	124563880	+	0	NA	intron (NM_001363300, intron 9 of 12)	intron (NM_001363300, intron 9 of 12)	24467	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
61383	chr13	51451201	51452200	+	0	NA	intron (NM_001039938, intron 2 of 2)	CpG	1336	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
196225	chr6	42791751	42792350	+	0	NA	TTS (NR_134654)	TTS (NR_134654)	8554	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
122782	chr19	50314771	50315330	+	0	NA	3' UTR (NM_004977, exon 5 of 5)	3' UTR (NM_004977, exon 5 of 5)	14021	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
234280	chrX	13569621	13570100	+	0	NA	5' UTR (NM_001167890, exon 1 of 12)	5' UTR (NM_001167890, exon 1 of 12)	259	NM_001167890	25975		NM_015507	ENSG00000198759	EGFL6	MAEG|W80	EGF like domain multiple 6	protein-coding
108781	chr18	77211851	77212150	+	0	NA	Intergenic	Intergenic	-37848	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
83357	chr16	25062121	25062380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4637	NR_135196	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
82837	chr16	21503521	21504180	+	0	NA	Intergenic	Intergenic	-1569	NR_027155	100271836		NR_027155	ENSG00000180747	SMG1P3	-	SMG1 pseudogene 3	pseudo
99371	chr17	49913301	49913700	+	0	NA	Intergenic	MIRb|SINE|MIR	-55690	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
91753	chr17	6829171	6829330	+	0	NA	intron (NM_053285, intron 2 of 7)	intron (NM_053285, intron 2 of 7)	2479	NM_053285	83659		NM_053285	ENSG00000167858	TEKT1	-	tektin 1	protein-coding
102663	chr17	76081371	76081530	+	0	NA	3' UTR (NM_015219, exon 18 of 18)	3' UTR (NM_015219, exon 18 of 18)	2268	NM_180990	353174		NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding
39272	chr11	57800251	57801050	+	0	NA	intron (NM_001331, intron 6 of 18)	intron (NM_001331, intron 6 of 18)	38848	NM_001331	1500		NM_001331	ENSG00000198561	CTNND1	BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
217706	chr8	30137071	30137980	+	0	NA	3' UTR (NM_001128208, exon 4 of 4)	3' UTR (NM_001128208, exon 4 of 4)	7140	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
211067	chr7	102471171	102471980	+	0	NA	TTS (NR_039677)	TTS (NR_039677)	106	NR_039677	100616367		NR_039677	ENSG00000284596	MIR4467	-	microRNA 4467	ncRNA
180218	chr5	1519821	1520300	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	3900	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
160650	chr3	31574871	31575880	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	42450	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
225027	chr9	33145851	33145950	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-21048	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
238611	chrX	153936651	153937450	+	0	NA	intron (NM_002910, intron 9 of 10)	AluJr|SINE|Alu	-2013	NM_003491	8260		NM_003491	ENSG00000102030	NAA10	ARD1|ARD1A|ARD1P|DXS707|LZMS|MAA|MCOPS1|NATD|OGDNS|TE2|hARD1	N-alpha-acetyltransferase 10, NatA catalytic subunit	protein-coding
82014	chr16	11926021	11926400	+	0	NA	Intergenic	Intergenic	-9556	NM_001130007	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
100834	chr17	64115851	64116630	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	13904	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
183692	chr5	80757321	80757580	+	0	NA	intron (NM_002439, intron 12 of 23)	MamRTE1|LINE|RTE-BovB	-102467	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
124960	chr2	8677651	8679580	+	0	NA	intron (NR_110154, intron 1 of 3)	intron (NR_110154, intron 1 of 3)	3246	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
144138	chr20	34020421	34020750	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-26218	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
163814	chr3	52436451	52437230	+	0	NA	intron (NM_020163, intron 15 of 15)	intron (NM_020163, intron 15 of 15)	8263	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
14336	chr1	143943571	143943880	+	0	NA	Intergenic	Intergenic	28281	NM_001346070	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
57252	chr12	121573921	121574380	+	0	NA	intron (NM_001005366, intron 4 of 22)	intron (NM_001005366, intron 4 of 22)	6096	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
152291	chr22	20315271	20315430	+	0	NA	exon (NM_033257, exon 4 of 5)	exon (NM_033257, exon 4 of 5)	4710	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
76947	chr15	78101271	78101830	+	0	NA	exon (NM_001101404, exon 5 of 6)	exon (NM_001101404, exon 5 of 6)	8965	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
112211	chr19	5695551	5696300	+	0	NA	intron (NR_076392, intron 14 of 18)	intron (NR_076392, intron 14 of 18)	5630	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
231681	chr9	131697871	131698030	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	11892	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
102764	chr17	76283521	76284180	+	0	NA	intron (NM_032134, intron 7 of 18)	AluSq2|SINE|Alu	18502	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
142290	chr20	3239891	3241200	+	0	NA	Intergenic	Intergenic	-1355	NR_135000	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
44735	chr11	111931401	111932430	+	0	NA	intron (NM_001278542, intron 2 of 5)	intron (NM_001278542, intron 2 of 5)	4771	NM_001278542	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
29906	chr10	73160071	73160230	+	0	NA	intron (NR_024203, intron 2 of 11)	AluSx|SINE|Alu	7858	NM_007265	11319		NM_007265	ENSG00000122882	ECD	GCR2|HSGT1|SGT1	ecdysoneless cell cycle regulator	protein-coding
160900	chr3	33805751	33806050	+	0	NA	intron (NM_001256192, intron 1 of 5)	AluY|SINE|Alu	7270	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
234001	chrX	3524501	3524830	+	0	NA	Intergenic	(CATCAC)n|Simple_repeat|Simple_repeat	7586	NR_145722	109616969		NR_145722	ENSG00000212214	SNORA48B	-	small nucleolar RNA, H/ACA box 48B	snoRNA
57434	chr12	121892401	121892880	+	0	NA	intron (NM_001261400, intron 1 of 3)	AluY|SINE|Alu	3850	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
216190	chr8	11839671	11840150	+	0	NA	TTS (NM_001287742)	TTS (NM_001287742)	28177	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
234334	chrX	14529001	14529450	+	0	NA	promoter-TSS (NM_002063)	promoter-TSS (NM_002063)	-73	NM_001118885	2742		NM_002063	ENSG00000101958	GLRA2	GLR|MRXSP	glycine receptor alpha 2	protein-coding
190759	chr6	469071	469230	+	0	NA	Intergenic	(GTCTCT)n|Simple_repeat|Simple_repeat	77398	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
116696	chr19	18431771	18432130	+	0	NA	intron (NM_032627, intron 8 of 17)	intron (NM_032627, intron 8 of 17)	5359	NM_001253389	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
156616	chr22	41576571	41577330	+	0	NA	TTS (NM_002676)	TTS (NM_002676)	12890	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
135568	chr2	165779001	165779200	+	0	NA	intron (NM_004482, intron 1 of 10)	LTR41|LTR|ERVL	15147	NM_004482	2591		NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HFTC1|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
177548	chr4	119113271	119113430	+	0	NA	Intergenic	Intergenic	-22482	NM_016599	51778		NM_016599	ENSG00000172399	MYOZ2	C4orf5|CMH16|CS-1|FATZ-2	myozenin 2	protein-coding
129541	chr2	69765871	69766230	+	0	NA	intron (NM_001365496, intron 2 of 13)	intron (NM_001365496, intron 2 of 13)	23916	NM_001320700	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
205772	chr7	23528271	23528950	+	0	NA	intron (NM_001362760, intron 1 of 8)	intron (NM_001362760, intron 1 of 8)	3371	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
3367	chr1	15615551	15615930	+	0	NA	Intergenic	Intergenic	-1718	NM_032341	84301		NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
493	chr1	1175171	1176850	+	0	NA	intron (NM_001371649, intron 3 of 15)	intron (NM_001371649, intron 3 of 15)	2130	NM_001371649	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
110036	chr19	1460721	1461180	+	0	NA	intron (NM_005883, intron 12 of 14)	intron (NM_005883, intron 12 of 14)	7966	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
69806	chr14	99204521	99205550	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	67162	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
34228	chr10	130090671	130090830	+	0	NA	intron (NM_001355042, intron 1 of 3)	L1PA7|LINE|L1	-15259	NR_044994	119437		NR_044994	ENSG00000233122	CTAGE7P	CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5	CTAGE family member 7, pseudogene	pseudo
70709	chr14	103330871	103331230	+	0	NA	Intergenic	AluJr|SINE|Alu	-3187	NM_001969	1983		NM_001969	ENSG00000100664	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
203654	chr7	986771	987730	+	0	NA	intron (NM_017781, intron 6 of 8)	CpG	4069	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
81578	chr16	9258471	9258630	+	0	NA	Intergenic	Intergenic	-97038	NR_135195	101927009		NR_135195	ENSG00000261617	LINC02177	-	long intergenic non-protein coding RNA 2177	ncRNA
225249	chr9	34255171	34255680	+	0	NA	intron (NM_194313, intron 11 of 12)	intron (NM_194313, intron 11 of 12)	73843	NM_194313	347240		NM_194313	ENSG00000186638	KIF24	C9orf48|bA571F15.4	kinesin family member 24	protein-coding
74418	chr15	59051401	59051600	+	0	NA	intron (NM_017610, intron 2 of 13)	AluSz|SINE|Alu	-53646	NM_004701	9133		NM_004701	ENSG00000157456	CCNB2	HsT17299	cyclin B2	protein-coding
200810	chr6	137909621	137909880	+	0	NA	Intergenic	Intergenic	36050	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
218364	chr8	43101601	43102200	+	0	NA	intron (NM_001277971, intron 2 of 3)	LTR65|LTR|ERV1	8385	NM_032237	84197		NM_032237	ENSG00000185900	POMK	MDDGA12|MDDGC12|SGK196	protein O-mannose kinase	protein-coding
55163	chr12	100153401	100153600	+	0	NA	Intergenic	Intergenic	-10626	NM_001006947	23074		NM_015054	ENSG00000111647	BLTP3B	SHIP164|SHIP164A|UHRF1BP1L	bridge-like lipid transfer protein family member 3B	protein-coding
72975	chr15	40573671	40574030	+	0	NA	exon (NM_152260, exon 3 of 3)	exon (NM_152260, exon 3 of 3)	4551	NM_152260	27079		NM_152260	ENSG00000166133	RPUSD2	C15orf19|C18B11|PUS9	RNA pseudouridine synthase domain containing 2	protein-coding
13112	chr1	111628471	111629680	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-8677	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
146785	chr20	50920071	50920230	+	0	NA	intron (NM_001347511, intron 1 of 4)	AluSx4|SINE|Alu	-10359	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
120356	chr19	43593801	43594030	+	0	NA	intron (NM_001007561, intron 2 of 2)	intron (NM_001007561, intron 2 of 2)	2220	NM_001007561	126298		NM_001007561	ENSG00000167378	IRGQ	FKSG27|IRGQ1	immunity related GTPase Q	protein-coding
40824	chr11	64936051	64936500	+	0	NA	promoter-TSS (NM_130769)	promoter-TSS (NM_130769)	-382	NM_130769	170589		NM_130769	ENSG00000149735	GPHA2	A2|GPA2|ZSIG51	glycoprotein hormone subunit alpha 2	protein-coding
133202	chr2	113127471	113127630	+	0	NA	promoter-TSS (NM_001379360)	promoter-TSS (NM_001379360)	-48	NM_173842	3557		NM_000577	ENSG00000136689	IL1RN	CRMO2|DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4	interleukin 1 receptor antagonist	protein-coding
10007	chr1	55201601	55202100	+	0	NA	intron (NM_015306, intron 1 of 67)	intron (NM_015306, intron 1 of 67)	13514	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
39625	chr11	61431751	61433080	+	0	NA	intron (NM_017841, intron 1 of 3)	MER2|DNA|TcMar-Tigger	2291	NM_017841	54949		NM_017841	ENSG00000167985	SDHAF2	C11orf79|PGL2|PPGL2|SDH5|hSDH5	succinate dehydrogenase complex assembly factor 2	protein-coding
6130	chr1	27357201	27358480	+	0	NA	exon (NM_001297609, exon 21 of 28)	exon (NM_001297609, exon 21 of 28)	9121	NM_001297609	9064		NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
156134	chr22	40115751	40116130	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	-61985	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
134310	chr2	135997521	135997780	+	0	NA	intron (NR_110199, intron 1 of 3)	intron (NR_110199, intron 1 of 3)	-11966	NM_001293312	1615		NM_001349	ENSG00000115866	DARS1	DARS|HBSL|aspRS	aspartyl-tRNA synthetase 1	protein-coding
203904	chr7	1498021	1499150	+	0	NA	intron (NM_001080453, intron 9 of 47)	CpG	5804	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
135596	chr2	167135771	167135930	+	0	NA	intron (NR_046665, intron 1 of 1)	intron (NR_046665, intron 1 of 1)	5105	NR_046665	100874011		NR_046665		XIRP2-AS1	-	XIRP2 antisense RNA 1	ncRNA
192755	chr6	26439831	26441130	+	0	NA	promoter-TSS (NM_001242803)	promoter-TSS (NM_001242803)	-24	NM_197974	10384		NM_006994	ENSG00000111801	BTN3A3	BTF3|BTN3.3	butyrophilin subfamily 3 member A3	protein-coding
116668	chr19	18391951	18392250	+	0	NA	exon (NM_145256, exon 2 of 2)	exon (NM_145256, exon 2 of 2)	5522	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
73294	chr15	41873151	41873780	+	0	NA	intron (NM_016642, intron 26 of 67)	intron (NM_016642, intron 26 of 67)	-6914	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
59267	chr13	24182451	24182550	+	0	NA	intron (NM_153023, intron 1 of 11)	MSTB|LTR|ERVL-MaLR	20084	NR_031753	100313842		NR_031753	ENSG00000252695	MIR2276	-	microRNA 2276	ncRNA
197632	chr6	83430701	83431200	+	0	NA	exon (NM_002395, exon 1 of 14)	exon (NM_002395, exon 1 of 14)	101	NM_002395	4199		NM_002395	ENSG00000065833	ME1	HUMNDME|MES	malic enzyme 1	protein-coding
80963	chr16	3876001	3876330	+	0	NA	intron (NM_004380, intron 1 of 30)	AluJr|SINE|Alu	3955	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
198424	chr6	106088901	106089330	+	0	NA	intron (NM_001198, intron 2 of 6)	intron (NM_001198, intron 2 of 6)	2779	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
195858	chr6	41527701	41528150	+	0	NA	intron (NR_126415, intron 1 of 1)	intron (NR_126415, intron 1 of 1)	18318	NR_126417	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
213228	chr7	133481721	133482150	+	0	NA	intron (NM_021807, intron 9 of 17)	intron (NM_021807, intron 9 of 17)	191054	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
212381	chr7	128029771	128030250	+	0	NA	exon (NM_022143, exon 2 of 2)	exon (NM_022143, exon 2 of 2)	1427	NM_022143	64101		NM_022143	ENSG00000128594	LRRC4	NAG14|NGL-2	leucine rich repeat containing 4	protein-coding
19595	chr1	179709621	179710350	+	0	NA	Intergenic	Intergenic	-17791	NM_001329714	148753		NM_173509	ENSG00000143340	FAM163A	C1orf76|NDSP	family with sequence similarity 163 member A	protein-coding
190931	chr6	2879051	2879150	+	0	NA	Intergenic	L1PBa1|LINE|L1	-2590	NR_033851	221756		NM_182544		SERPINB9P1	SERPINB9P	serpin family B member 9 pseudogene 1	pseudo
201185	chr6	143098051	143098150	+	0	NA	intron (NM_001366344, intron 2 of 6)	L2|LINE|L2	-28039	NM_001366358	51390		NM_016108	ENSG00000146416	AIG1	AIG-1|dJ95L4.1	androgen induced 1	protein-coding
772	chr1	1521251	1521350	+	0	NA	intron (NM_018188, intron 7 of 15)	AluY|SINE|Alu	8770	NM_001170536	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
204233	chr7	2540601	2541450	+	0	NA	non-coding (NR_146879, exon 10 of 15)	non-coding (NR_146879, exon 10 of 15)	13951	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
203753	chr7	1168871	1169030	+	0	NA	Intergenic	AluSq2|SINE|Alu	8165	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
66619	chr14	63726821	63728650	+	0	NA	exon (NM_030791, exon 1 of 3)	exon (NM_030791, exon 1 of 3)	330	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
96898	chr17	42123071	42123230	+	0	NA	exon (NM_033194, exon 1 of 1)	exon (NM_033194, exon 1 of 1)	346	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
14907	chr1	147171671	147173650	+	0	NA	promoter-TSS (NM_001348451)	promoter-TSS (NM_001348451)	-87	NM_001348451	9557		NM_004284	ENSG00000131778	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1 like	protein-coding
132539	chr2	106174501	106174700	+	0	NA	intron (NR_165308, intron 1 of 14)	intron (NR_165308, intron 1 of 14)	-13963	NM_001377509	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
54375	chr12	89762401	89762800	+	0	NA	Intergenic	Intergenic	-53234	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
202537	chr6	158631571	158631880	+	0	NA	intron (NR_164859, intron 16 of 16)	intron (NR_164859, intron 16 of 16)	13018	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
30846	chr10	86520151	86520250	+	0	NA	intron (NM_015045, intron 1 of 18)	AluSp|SINE|Alu	1584	NM_001318328	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
19560	chr1	179080201	179083430	+	0	NA	promoter-TSS (NM_022371)	promoter-TSS (NM_022371)	-255	NM_022371	64222		NM_022371	ENSG00000186283	TOR3A	ADIR|ADIR2	torsin family 3 member A	protein-coding
124648	chr2	2557451	2557750	+	0	NA	Intergenic	Intergenic	-226325	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
208115	chr7	58434551	58434730	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	984463	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
29337	chr10	69411921	69412430	+	0	NA	intron (NM_001057, intron 2 of 4)	LTR8|LTR|ERV1	4743	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
219891	chr8	85657851	85658680	+	0	NA	Intergenic	Intergenic	-2589	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
35200	chr11	804471	806830	+	0	NA	promoter-TSS (NM_145887)	promoter-TSS (NM_145887)	-419	NM_145887	55367		NM_018494	ENSG00000177595	PIDD1	LRDD|MRT75|PIDD	p53-induced death domain protein 1	protein-coding
58011	chr12	124381821	124382080	+	0	NA	intron (NM_001077261, intron 19 of 47)	intron (NM_001077261, intron 19 of 47)	-44708	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
177989	chr4	139227771	139228080	+	0	NA	Intergenic	Intergenic	-50707	NM_001371336	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
143675	chr20	32020801	32021130	+	0	NA	intron (NM_080625, intron 5 of 8)	AluSx1|SINE|Alu	10527	NM_080625	140706		NM_080625	ENSG00000101331	CCM2L	C20orf160|dJ310O13.5	CCM2 like scaffold protein	protein-coding
95970	chr17	39152271	39153500	+	0	NA	Intergenic	Intergenic	-1248	NM_020405	57125		NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
84063	chr16	29589251	29589430	+	0	NA	intron (NR_135305, intron 1 of 13)	intron (NR_135305, intron 1 of 13)	5752	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
96191	chr17	39742001	39742830	+	0	NA	exon (NM_001242442, exon 2 of 15)	exon (NM_001242442, exon 2 of 15)	2448	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
54423	chr12	91355321	91355600	+	0	NA	Intergenic	Intergenic	-172643	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
170496	chr3	186125771	186125930	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-16761	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
225138	chr9	33649521	33649880	+	0	NA	Intergenic	Intergenic	25475	NR_003573	304		NR_003573		ANXA2P2	ANX2L2|ANX2P2|LPC2B	annexin A2 pseudogene 2	pseudo
172510	chr4	2263701	2264350	+	0	NA	Intergenic	Intergenic	-1916	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
219346	chr8	70246301	70247000	+	0	NA	intron (NM_001321713, intron 2 of 21)	L1MB2|LINE|L1	156740	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
188547	chr5	156892251	156892500	+	0	NA	Intergenic	Intergenic	42080	NM_206858	153743		NM_206858	ENSG00000231989	PPP1R2B	PPP1R2P3	PPP1R2 family member B	protein-coding
17114	chr1	156159021	156159730	+	0	NA	intron (NM_001370567, intron 5 of 13)	intron (NM_001370567, intron 5 of 13)	4827	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
80072	chr16	1987051	1987830	+	0	NA	3' UTR (NM_005262, exon 3 of 3)	3' UTR (NM_005262, exon 3 of 3)	-2530	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
166894	chr3	124639621	124640300	+	0	NA	intron (NM_007064, intron 4 of 26)	intron (NM_007064, intron 4 of 26)	55301	NM_001322997	8997		NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|KALNC2|TRAD	kalirin RhoGEF kinase	protein-coding
186612	chr5	138527421	138527980	+	0	NA	intron (NM_004730, intron 2 of 10)	intron (NM_004730, intron 2 of 10)	14011	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
144027	chr20	33491651	33492130	+	0	NA	intron (NM_001032999, intron 1 of 10)	AluSq|SINE|Alu	1794	NM_001032999	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
76538	chr15	75179371	75179530	+	0	NA	Intergenic	Intergenic	-22432	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
86903	chr16	68062401	68063400	+	0	NA	intron (NM_001271763, intron 6 of 14)	intron (NM_001271763, intron 6 of 14)	-22470	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
228860	chr9	112327971	112328980	+	0	NA	intron (NM_001375918, intron 1 of 13)	intron (NM_001375918, intron 1 of 13)	4551	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
76769	chr15	76994601	76995730	+	0	NA	promoter-TSS (NM_003978)	promoter-TSS (NM_003978)	39	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
24813	chr10	230701	230950	+	0	NA	intron (NM_212479, intron 4 of 13)	MamGypsy2-I|LTR|Gypsy	50831	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
77292	chr15	82304751	82305250	+	0	NA	intron (NR_045529, intron 6 of 23)	intron (NR_045529, intron 6 of 23)	11717	NR_045529	390660		NR_045529	ENSG00000274376	ADAMTS7P1	ADAMTS7P2	ADAMTS7 pseudogene 1	pseudo
23663	chr1	231215121	231215680	+	0	NA	exon (NM_001004342, exon 10 of 10)	exon (NM_001004342, exon 10 of 10)	25775	NM_001300830	128061		NM_152379	ENSG00000143633	C1orf131	-	chromosome 1 open reading frame 131	protein-coding
135792	chr2	169814821	169815080	+	0	NA	intron (NM_001293186, intron 6 of 7)	AluSx|SINE|Alu	-1329	NR_145754	109617017		NR_145754		SNORD3K	-	small nucleolar RNA, C/D box 3K	snoRNA
213110	chr7	131231001	131231980	+	0	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	96289	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
153696	chr22	29266071	29266230	+	0	NA	intron (NR_138044, intron 2 of 6)	intron (NR_138044, intron 2 of 6)	1831	NR_138044	25807		NM_012265	ENSG00000100263	RHBDD3	C22orf3|HS984G1A|PTAG	rhomboid domain containing 3	protein-coding
16067	chr1	153345571	153346330	+	0	NA	intron (NM_020393, intron 3 of 8)	intron (NM_020393, intron 3 of 8)	2891	NM_020393	57115		NM_020393	ENSG00000163218	PGLYRP4	PGLYRPIbeta|PGRP-Ibeta|PGRPIB|SBBI67	peptidoglycan recognition protein 4	protein-coding
113616	chr19	10310821	10311580	+	0	NA	intron (NM_001031734, intron 3 of 4)	intron (NM_001031734, intron 3 of 4)	-1643	NM_001103167	100125288		NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	zinc finger GATA like protein 1	protein-coding
84301	chr16	30088951	30089350	+	0	NA	exon (NM_004608, exon 4 of 9)	exon (NM_004608, exon 4 of 9)	2774	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
204421	chr7	3108351	3108450	+	0	NA	Intergenic	MIR|SINE|MIR	50173	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
153940	chr22	30338671	30339230	+	0	NA	exon (NM_005877, exon 11 of 16)	exon (NM_005877, exon 11 of 16)	-12009	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
162369	chr3	47853621	47854080	+	0	NA	intron (NM_001384879, intron 17 of 18)	intron (NM_001384879, intron 17 of 18)	4295	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
9869	chr1	54302621	54302880	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	66307	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
122807	chr19	50376121	50377630	+	0	NA	intron (NM_001256647, intron 2 of 8)	CpG-14984	418	NM_007121	7376		NM_007121	ENSG00000131408	NR1H2	LXR-b|LXRB|NER|NER-I|RIP15|UNR	nuclear receptor subfamily 1 group H member 2	protein-coding
163257	chr3	50289951	50290650	+	0	NA	intron (NM_006764, intron 3 of 11)	intron (NM_006764, intron 3 of 11)	2129	NM_006764	7866		NM_006764	ENSG00000214706	IFRD2	IFNRP|SKMc15|SM15	interferon related developmental regulator 2	protein-coding
89364	chr16	88778621	88778980	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	6420	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
38885	chr11	47391151	47391580	+	0	NA	Intergenic	Intergenic	-9605	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
174339	chr4	38686351	38686650	+	0	NA	intron (NM_016531, intron 2 of 5)	intron (NM_016531, intron 2 of 5)	-21872	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
164737	chr3	69015901	69016100	+	0	NA	Intergenic	L1MC5|LINE|L1	-2316	NM_001278689	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
84972	chr16	31427501	31428400	+	0	NA	intron (NM_005205, intron 2 of 2)	CpG	410	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
32041	chr10	101036051	101037850	+	0	NA	intron (NM_030971, intron 7 of 11)	intron (NM_030971, intron 7 of 11)	5711	NM_030971	81855		NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3|SLC56A3	sideroflexin 3	protein-coding
220165	chr8	95090151	95090500	+	0	NA	intron (NR_148914, intron 9 of 11)	intron (NR_148914, intron 9 of 11)	-17143	NR_132986	105375650		NR_132986	ENSG00000245080	MIR3150BHG	-	MIR3150B host gene	ncRNA
172767	chr4	2915671	2915830	+	0	NA	intron (NM_176801, intron 13 of 15)	AluSp|SINE|Alu	18487	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
4418	chr1	21233271	21233830	+	0	NA	intron (NM_001397, intron 14 of 18)	intron (NM_001397, intron 14 of 18)	46065	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
49392	chr12	22443021	22443700	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	100837	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
125409	chr2	11738501	11739000	+	0	NA	intron (NM_001261427, intron 1 of 20)	L1MEc|LINE|L1	-7882	NM_001349206	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
65683	chr14	52697651	52698000	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2267	NM_001382465	30001		NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
71845	chr15	22225401	22225800	+	0	NA	promoter-TSS (NR_031672)	promoter-TSS (NR_031672)	-271	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
99679	chr17	50753621	50755180	+	0	NA	3' UTR (NM_016424, exon 10 of 10)	3' UTR (NM_016424, exon 10 of 10)	13118	NM_001358683	55018		NM_017928	ENSG00000167117	ANKRD40CL	C17orf73|LINC00483	ANKRD40 C-terminal like	protein-coding
170837	chr3	190306451	190306980	+	0	NA	3' UTR (NM_021101, exon 4 of 4)	3' UTR (NM_021101, exon 4 of 4)	15731	NM_021101	9076		NM_021101	ENSG00000163347	CLDN1	CLD1|ILVASC|SEMP1	claudin 1	protein-coding
233442	chr9	137622771	137623500	+	0	NA	intron (NM_001354612, intron 1 of 8)	AluY|SINE|Alu	4130	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
62964	chr13	112287251	112288050	+	0	NA	Intergenic	Intergenic	-14650	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
77561	chr15	84845371	84845880	+	0	NA	intron (NM_020778, intron 5 of 13)	L1MEf|LINE|L1	28269	NM_020778	57538		NM_020778	ENSG00000136383	ALPK3	CMH27|MAK|MIDORI	alpha kinase 3	protein-coding
63270	chr13	113957371	113958330	+	0	NA	intron (NM_001365455, intron 6 of 6)	intron (NM_001365455, intron 6 of 6)	16226	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
27199	chr10	28570671	28571200	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	37817	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
143941	chr20	32765751	32766050	+	0	NA	intron (NM_175849, intron 1 of 19)	AluY|SINE|Alu	3515	NM_006892	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
207312	chr7	44030521	44031080	+	0	NA	non-coding (NR_024116, exon 7 of 9)	non-coding (NR_024116, exon 7 of 9)	-8249	NR_072982	255031		NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
160365	chr3	27876901	27877230	+	0	NA	Intergenic	MER41B|LTR|ERV1	-42929	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
48466	chr12	9757621	9757950	+	0	NA	intron (NM_001781, intron 1 of 4)	L1ME2|LINE|L1	3116	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
101832	chr17	73650271	73650430	+	0	NA	Intergenic	Intergenic	-5905	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
60013	chr13	32530721	32531780	+	0	NA	intron (NM_001278432, intron 2 of 9)	MLT1F2|LTR|ERVL-MaLR	7545	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
70217	chr14	100637501	100637700	+	0	NA	Intergenic	Intergenic	-19668	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
159051	chr3	11606201	11606400	+	0	NA	intron (NM_014667, intron 2 of 5)	THE1B|LTR|ERVL-MaLR	-1719	NM_001284391	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
174033	chr4	26860001	26861200	+	0	NA	promoter-TSS (NM_001169117)	promoter-TSS (NM_001169117)	-1	NR_134673	105374546		NR_134673		STIM2-AS1	-	STIM2 antisense RNA 1	ncRNA
66311	chr14	61410401	61411300	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	89407	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
78904	chr15	101130851	101130950	+	0	NA	Intergenic	L1MB3|LINE|L1	121148	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
30427	chr10	79044951	79045250	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	22348	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
175435	chr4	71110271	71110430	+	0	NA	Intergenic	AluJb|SINE|Alu	-76415	NM_001134742	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
22864	chr1	225480621	225481180	+	0	NA	Intergenic	LTR53|LTR|ERVL	-52045	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
8698	chr1	42173051	42173570	+	0	NA	Intergenic	Intergenic	-8565	NM_033553	2980		NM_033553	ENSG00000197273	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A	protein-coding
222169	chr8	132901351	132901650	+	0	NA	exon (NM_003235, exon 16 of 48)	exon (NM_003235, exon 16 of 48)	34542	NM_003235	7038		NM_003235	ENSG00000042832	TG	AITD3|TGN	thyroglobulin	protein-coding
162063	chr3	46858351	46858850	+	0	NA	intron (NM_000258, intron 4 of 6)	intron (NM_000258, intron 4 of 6)	4844	NM_000258	4634		NM_000258	ENSG00000160808	MYL3	CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl	myosin light chain 3	protein-coding
92153	chr17	7667601	7667800	+	0	NA	TTS (NM_001126114)	TTS (NM_001126114)	7544	NM_001276699	7157		NM_000546	ENSG00000141510	TP53	BCC7|BMFS5|LFS1|P53|TRP53	tumor protein p53	protein-coding
13951	chr1	120351851	120352150	+	0	NA	Intergenic	AluJo|SINE|Alu	-63027	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
46172	chr11	123110421	123110800	+	0	NA	intron (NM_024769, intron 1 of 6)	AluSx|SINE|Alu	-48474	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
149050	chr21	15060871	15061430	+	0	NA	intron (NM_003489, intron 1 of 3)	intron (NM_003489, intron 1 of 3)	3850	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
221706	chr8	127184651	127184950	+	0	NA	Intergenic	Intergenic	12827	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
151649	chr22	16810921	16811190	+	0	NA	intron (NM_001318251, intron 1 of 3)	intron (NM_001318251, intron 1 of 3)	10644	NM_001318251	150165		NM_175878	ENSG00000172967	XKR3	XRG3|XTES	XK related 3	protein-coding
195970	chr6	41960301	41960900	+	0	NA	intron (NM_001136017, intron 1 of 4)	MIRb|SINE|MIR	-18752	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
122586	chr19	49690771	49692100	+	0	NA	promoter-TSS (NM_001378484)	promoter-TSS (NM_001378484)	-61	NM_001378484	126129		NM_152359	ENSG00000169169	CPT1C	CATL1|CPT I-C|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73	carnitine palmitoyltransferase 1C	protein-coding
127264	chr2	38707101	38707500	+	0	NA	intron (NM_138801, intron 4 of 6)	L2|LINE|L2	41186	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
180120	chr5	1309421	1309680	+	0	NA	promoter-TSS (NR_039662)	promoter-TSS (NR_039662)	-173	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
109823	chr19	1172001	1172200	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	2168	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
217502	chr8	29062801	29063000	+	0	NA	Intergenic	Intergenic	171586	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
124305	chr19	57934951	57935480	+	0	NA	5' UTR (NM_001317027, exon 1 of 7)	5' UTR (NM_001317027, exon 1 of 7)	187	NM_001317029	147686		NM_133460	ENSG00000196724	ZNF418	ZFP418	zinc finger protein 418	protein-coding
85567	chr16	53455121	53455500	+	0	NA	intron (NM_001323609, intron 8 of 20)	intron (NM_001323609, intron 8 of 20)	19691	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
27027	chr10	26855171	26855530	+	0	NA	intron (NM_001178116, intron 1 of 11)	intron (NM_001178116, intron 1 of 11)	5608	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
53254	chr12	62633551	62633650	+	0	NA	Intergenic	Intergenic	29914	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
188825	chr5	159094871	159095500	+	0	NA	intron (NM_001364155, intron 4 of 14)	intron (NM_001364155, intron 4 of 14)	2771	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
95734	chr17	38583901	38585350	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	21327	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
170468	chr3	185927151	185928950	+	0	NA	intron (NM_004593, intron 1 of 8)	intron (NM_004593, intron 1 of 8)	9964	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
64913	chr14	35414671	35414830	+	0	NA	Intergenic	Intergenic	-10001	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
227067	chr9	84293201	84293980	+	0	NA	intron (NM_001199633, intron 9 of 17)	intron (NM_001199633, intron 9 of 17)	47168	NR_037638	64078		NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
237984	chrX	134377571	134377750	+	0	NA	exon (NM_032458, exon 2 of 10)	exon (NM_032458, exon 2 of 10)	4348	NM_032335	84295		NM_032335	ENSG00000156531	PHF6	BFLS|BORJ|CENP-31	PHD finger protein 6	protein-coding
23009	chr1	226183621	226184300	+	0	NA	intron (NM_022735, intron 1 of 7)	AluY|SINE|Alu	2781	NM_022735	64746		NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
62328	chr13	99066071	99066830	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	20244	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
165338	chr3	88095801	88096000	+	0	NA	intron (NM_001350134, intron 2 of 8)	intron (NM_001350134, intron 2 of 8)	36645	NM_001366097	55279		NM_018293	ENSG00000175105	ZNF654	-	zinc finger protein 654	protein-coding
144249	chr20	34516101	34517880	+	0	NA	intron (NR_168137, intron 1 of 2)	MIR|SINE|MIR	568	NM_001382367	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
137528	chr2	197207251	197207350	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	9309	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
89928	chr16	89727101	89728400	+	0	NA	intron (NR_110122, intron 5 of 10)	intron (NR_110122, intron 5 of 10)	6213	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
107282	chr18	44682151	44682400	+	0	NA	intron (NM_015559, intron 1 of 5)	intron (NM_015559, intron 1 of 5)	1387	NM_015559	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
158747	chr3	9249251	9249980	+	0	NA	promoter-TSS (NM_001033117)	promoter-TSS (NM_001033117)	31	NM_014850	9901		NM_014850	ENSG00000196220	SRGAP3	ARHGAP14|MEGAP|SRGAP2|WRP	SLIT-ROBO Rho GTPase activating protein 3	protein-coding
44103	chr11	95920021	95920780	+	0	NA	intron (NM_201278, intron 1 of 16)	AluSz6|SINE|Alu	3707	NM_016156	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
110262	chr19	1801421	1801680	+	0	NA	intron (NR_047593, intron 12 of 28)	AluSz|SINE|Alu	10726	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
21553	chr1	206240401	206240600	+	0	NA	intron (NM_001377446, intron 2 of 21)	intron (NM_001377446, intron 2 of 21)	-34727	NM_001385243	729533		NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
210551	chr7	100335551	100337200	+	0	NA	promoter-TSS (NR_003613)	promoter-TSS (NR_003613)	-68	NR_003613	5379		NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
113134	chr19	8324621	8325700	+	0	NA	intron (NM_198471, intron 7 of 10)	intron (NM_198471, intron 7 of 10)	3664	NM_001031	6234		NM_001031	ENSG00000233927	RPS28	DBA15|S28|eS28	ribosomal protein S28	protein-coding
220504	chr8	100577571	100577730	+	0	NA	intron (NM_001363720, intron 9 of 10)	LTR33|LTR|ERVL	-17891	NM_001270377	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
100050	chr17	58088401	58089150	+	0	NA	intron (NM_080677, intron 2 of 2)	intron (NM_080677, intron 2 of 2)	5356	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
45780	chr11	119284471	119284900	+	0	NA	intron (NM_005188, intron 9 of 15)	intron (NM_005188, intron 9 of 15)	28327	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
6560	chr1	28669601	28670750	+	0	NA	intron (NM_024482, intron 1 of 9)	AluSc8|SINE|Alu	1391	NM_001319674	10691		NM_006582	ENSG00000162419	GMEB1	P96PIF|PIF96	glucocorticoid modulatory element binding protein 1	protein-coding
107913	chr18	57580571	57580730	+	0	NA	intron (NM_001371094, intron 1 of 9)	intron (NM_001371094, intron 1 of 9)	6052	NM_001371095	2235		NM_000140	ENSG00000066926	FECH	EPP|EPP1|FCE	ferrochelatase	protein-coding
198209	chr6	97382101	97382300	+	0	NA	intron (NR_110757, intron 1 of 4)	L1PA3|LINE|L1	76614	NR_110757	101927314		NR_110757	ENSG00000271860	LOC101927314	-	uncharacterized LOC101927314	ncRNA
53432	chr12	65126271	65126670	+	0	NA	Intergenic	Intergenic	-5165	NM_007191	11197		NM_007191	ENSG00000156076	WIF1	WIF-1	WNT inhibitory factor 1	protein-coding
153668	chr22	28899251	28899780	+	0	NA	intron (NM_001206998, intron 1 of 8)	intron (NM_001206998, intron 1 of 8)	15943	NM_001206998	84133		NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
140823	chr2	236548371	236548780	+	0	NA	Intergenic	Intergenic	-21250	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
205576	chr7	21357771	21357930	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-70233	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
52580	chr12	56175071	56175230	+	0	NA	intron (NM_003075, intron 15 of 27)	AluSp|SINE|Alu	14333	NM_001130420	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
160957	chr3	36958471	36959100	+	0	NA	Intergenic	Intergenic	-13731	NM_001329998	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
59494	chr13	26606251	26606350	+	0	NA	intron (NM_006646, intron 1 of 9)	AluJb|SINE|Alu	48597	NM_001291965	10810		NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	WASP family member 3	protein-coding
214559	chr7	150566251	150566550	+	0	NA	promoter-TSS (NM_001363532)	promoter-TSS (NM_001363532)	-970	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
148775	chr21	8205801	8206500	+	0	NA	TTS (NR_106782)	TTS (NR_106782)	162	NR_146144	109864279		NR_146144		RNA45SN2	-	RNA, 45S pre-ribosomal N2	rRNA
193423	chr6	30459351	30459930	+	0	NA	Intergenic	L1M1|LINE|L1	-29869	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
53615	chr12	68148551	68149100	+	0	NA	Intergenic	L1MCb|LINE|L1	10915	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
100444	chr17	61389621	61390600	+	0	NA	intron (NM_001353146, intron 25 of 25)	intron (NM_001353146, intron 25 of 25)	9496	NR_125749	103689912		NR_125749	ENSG00000267280	TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
54865	chr12	95548021	95549930	+	0	NA	promoter-TSS (NR_125360)	promoter-TSS (NR_125360)	-173	NR_144947	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
150240	chr21	41366751	41367050	+	0	NA	intron (NM_002463, intron 1 of 13)	intron (NM_002463, intron 1 of 13)	4873	NM_002463	4600		NM_002463	ENSG00000183486	MX2	MXB	MX dynamin like GTPase 2	protein-coding
73467	chr15	43495471	43495830	+	0	NA	intron (NM_005657, intron 1 of 27)	AluY|SINE|Alu	-2494	NM_001355001	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
205988	chr7	26184701	26185250	+	0	NA	exon (NM_004289, exon 4 of 4)	exon (NM_004289, exon 4 of 4)	15771	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
131904	chr2	98770401	98771300	+	0	NA	intron (NR_126337, intron 1 of 3)	AluY|SINE|Alu	1048	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
20588	chr1	198754901	198755530	+	0	NA	intron (NM_002838, intron 32 of 32)	MLT1H|LTR|ERVL-MaLR	103767	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
124667	chr2	3222371	3223950	+	0	NA	intron (NM_001330531, intron 3 of 7)	intron (NM_001330531, intron 3 of 7)	-97134	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
208903	chr7	73886101	73886300	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	25041	NM_182504	135886		NM_182504	ENSG00000175877	TMEM270	WBSCR28	transmembrane protein 270	protein-coding
57576	chr12	122268121	122268530	+	0	NA	Intergenic	Intergenic	-1831	NM_001351021	65082		NM_022916	ENSG00000139719	VPS33A	MPSPS	VPS33A core subunit of CORVET and HOPS complexes	protein-coding
53774	chr12	68804101	68804300	+	0	NA	TTS (NR_073494)	TTS (NR_073494)	1294	NR_073494	100130075		NR_073494		SZRD1P1	-	SZRD1 pseudogene 1	pseudo
160607	chr3	31377001	31377450	+	0	NA	Intergenic	Intergenic	-155700	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
105524	chr17	83116821	83117080	+	0	NA	Intergenic	Intergenic	35804	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
213363	chr7	135800901	135801600	+	0	NA	Intergenic	Intergenic	-52437	NM_001369697	389558		NM_205855	ENSG00000189320	FAM180A	UNQ1940	family with sequence similarity 180 member A	protein-coding
43653	chr11	85668871	85669250	+	0	NA	intron (NR_165401, intron 1 of 3)	L1M5|LINE|L1	-3931	NR_165406	58487		NM_021212	ENSG00000137504	CREBZF	SMILE|ZF	CREB/ATF bZIP transcription factor	protein-coding
201202	chr6	143498501	143498850	+	0	NA	intron (NM_032020, intron 5 of 6)	L2a|LINE|L2	13045	NM_032020	2519		NM_032020	ENSG00000001036	FUCA2	dJ20N2.5	alpha-L-fucosidase 2	protein-coding
54890	chr12	95856951	95857250	+	0	NA	intron (NR_135014, intron 1 of 2)	intron (NR_135014, intron 1 of 2)	1739	NR_135015	105369921		NR_135014	ENSG00000258343	SNRPF-DT	-	SNRPF divergent transcript	ncRNA
95472	chr17	36194871	36195030	+	0	NA	TTS (NM_021006)	TTS (NM_021006)	1356	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
49022	chr12	14283601	14283800	+	0	NA	Intergenic	Intergenic	-81932	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
20312	chr1	197395001	197395200	+	0	NA	intron (NM_201253, intron 5 of 11)	MIR|SINE|MIR	126848	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
129416	chr2	69305221	69305480	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	81877	NM_002056	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
192114	chr6	16733101	16733300	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	26984	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
140241	chr2	231900501	231900900	+	0	NA	Intergenic	CpG	-8402	NR_031717	100302126		NR_031717	ENSG00000222246	MIR1471	MIRN1471|hsa-mir-1471	microRNA 1471	ncRNA
1806	chr1	6204621	6205600	+	0	NA	intron (NR_125997, intron 2 of 2)	intron (NR_125997, intron 2 of 2)	670	NR_125997	102724450		NR_125997	ENSG00000226944	RNF207-AS1	-	RNF207 antisense RNA 1	ncRNA
131654	chr2	97650501	97651280	+	0	NA	Intergenic	Intergenic	4828	NM_001862	1329		NM_001862	ENSG00000135940	COX5B	COXVB	cytochrome c oxidase subunit 5B	protein-coding
13248	chr1	112702421	112703550	+	0	NA	intron (NM_001042678, intron 3 of 4)	intron (NM_001042678, intron 3 of 4)	4071	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
132728	chr2	109210851	109211630	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-69652	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
208653	chr7	73052051	73052230	+	0	NA	intron (NM_001382563, intron 4 of 6).2	intron (NM_001382563, intron 4 of 6).2	4424	NM_001382563	105180390		NM_001382563	ENSG00000286038	SPDYE13	SPDYE13P	speedy/RINGO cell cycle regulator family member E13	protein-coding
180773	chr5	32169171	32169530	+	0	NA	intron (NM_022130, intron 1 of 3)	intron (NM_022130, intron 1 of 3)	4969	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
186998	chr5	139743551	139744200	+	0	NA	intron (NR_105053, intron 2 of 2)	intron (NR_105053, intron 2 of 2)	2348	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
217935	chr8	38101571	38102350	+	0	NA	Intergenic	AluSp|SINE|Alu	-3533	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
96697	chr17	41340451	41340750	+	0	NA	Intergenic	Intergenic	10228	NM_004138	3883		NM_004138	ENSG00000006059	KRT33A	HA3I|Ha-3I|K33A|KRTHA3A|Krt1-3|hHa3-I	keratin 33A	protein-coding
135825	chr2	170435051	170435600	+	0	NA	intron (NR_045682, intron 22 of 35)	MER110A|LTR|ERV1	-84382	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
116647	chr19	18321501	18322030	+	0	NA	intron (NM_012321, intron 1 of 4)	LTR8|LTR|ERV1	1311	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
149444	chr21	31554551	31554850	+	0	NA	intron (NM_001353688, intron 1 of 29)	intron (NM_001353688, intron 1 of 29)	4387	NM_001353689	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
18689	chr1	167425301	167425700	+	0	NA	non-coding (NR_037163, exon 17 of 17)	non-coding (NR_037163, exon 17 of 17)	93029	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
191161	chr6	4802471	4802630	+	0	NA	intron (NM_001368127, intron 1 of 5)	AluJr|SINE|Alu	26146	NM_001368126	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
158592	chr3	4776771	4777130	+	0	NA	intron (NM_002222, intron 43 of 57)	intron (NM_002222, intron 43 of 57)	-25360	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
118512	chr19	35969621	35969930	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	22660	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
222010	chr8	130041851	130043250	+	0	NA	Intergenic	Intergenic	-25421	NM_001353269	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
12287	chr1	100712451	100713670	+	0	NA	Intergenic	LTR12|LTR|ERV1	-6580	NM_080682	7412		NM_001078	ENSG00000162692	VCAM1	CD106|INCAM-100	vascular cell adhesion molecule 1	protein-coding
197083	chr6	56843951	56844380	+	0	NA	promoter-TSS (NM_183380)	promoter-TSS (NM_183380)	179	NR_125866	101930010		NR_125866		DST-AS1	-	DST antisense RNA 1	ncRNA
122978	chr19	50797801	50798450	+	0	NA	TTS (NR_003068)	TTS (NR_003068)	1000	NR_003068	692203		NR_003068	ENSG00000221381	SNORD88B	HBII-180B	small nucleolar RNA, C/D box 88B	snoRNA
180674	chr5	18761571	18762130	+	0	NA	Intergenic	L2|LINE|L2	954576	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
36578	chr11	6670601	6671730	+	0	NA	Intergenic	Intergenic	12175	NM_022061	63875		NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26|bL17m	mitochondrial ribosomal protein L17	protein-coding
25476	chr10	6924951	6925250	+	0	NA	Intergenic	L1M7|LINE|L1	145502	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
212702	chr7	129775451	129776380	+	0	NA	promoter-TSS (NR_029615)	promoter-TSS (NR_029615)	-901	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
208754	chr7	73533221	73533480	+	0	NA	Intergenic	Intergenic	-11057	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
90316	chr17	1112301	1112900	+	0	NA	intron (NM_001322840, intron 2 of 22).2	GA-rich|Low_complexity|Low_complexity	-3498	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
24449	chr1	243803471	243804050	+	0	NA	intron (NM_005465, intron 2 of 13)	intron (NM_005465, intron 2 of 13)	39522	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
131753	chr2	98460821	98462030	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	15415	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
61344	chr13	50893271	50894300	+	0	NA	intron (NR_046552, intron 1 of 2)	intron (NR_046552, intron 1 of 2)	-15893	NM_001142279	79621		NM_024570	ENSG00000136104	RNASEH2B	AGS2|DLEU8	ribonuclease H2 subunit B	protein-coding
202425	chr6	157945201	157945800	+	0	NA	TTS (NM_016224)	TTS (NM_016224)	-36363	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
127786	chr2	44204771	44205300	+	0	NA	intron (NM_002706, intron 2 of 5)	intron (NM_002706, intron 2 of 5)	36160	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
28305	chr10	46229351	46229530	+	0	NA	intron (NR_103828, intron 2 of 2)	L1PB4|LINE|L1	40168	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
133185	chr2	112941771	112942150	+	0	NA	Intergenic	Intergenic	26767	NM_173205	27178		NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-23|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
37949	chr11	34405021	34405500	+	0	NA	Intergenic	MIRb|SINE|MIR	-33674	NM_001752	847		NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
219379	chr8	70392971	70393130	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	10340	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
109241	chr19	506301	508700	+	0	NA	promoter-TSS (NM_033513)	promoter-TSS (NM_033513)	3	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
111582	chr19	4077271	4079080	+	0	NA	Intergenic	Intergenic	-11276	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
39556	chr11	61123771	61124280	+	0	NA	intron (NM_001346456, intron 8 of 10)	intron (NM_001346456, intron 8 of 10)	21536	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
186966	chr5	139669521	139671550	+	0	NA	intron (NM_001317203, intron 2 of 3)	intron (NM_001317203, intron 2 of 3)	-4908	NM_001317208	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
177567	chr4	119366921	119367280	+	0	NA	Intergenic	Intergenic	43560	NR_037596	401149		NR_037596		LINC01061	KIKAT	long intergenic non-protein coding RNA 1061	ncRNA
135547	chr2	162733121	162733380	+	0	NA	intron (NM_173162, intron 2 of 7)	intron (NM_173162, intron 2 of 7)	-35686	NR_110258	101929570		NR_110258	ENSG00000237750	KCNH7-AS1	-	KCNH7 antisense RNA 1	ncRNA
197389	chr6	73498021	73498750	+	0	NA	intron (NM_133645, intron 12 of 12)	intron (NM_133645, intron 12 of 12)	20053	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
205549	chr7	20280171	20280330	+	0	NA	Intergenic	Intergenic	-16458	NR_110117	101927769		NR_110117	ENSG00000226097	LOC101927769	-	uncharacterized LOC101927769	ncRNA
122034	chr19	48630901	48632150	+	0	NA	intron (NM_001352, intron 3 of 3)	intron (NM_001352, intron 3 of 3)	5854	NM_001352	1628		NM_001352	ENSG00000105516	DBP	DABP|taxREB302	D-box binding PAR bZIP transcription factor	protein-coding
165790	chr3	105800221	105800730	+	0	NA	intron (NM_001321811, intron 3 of 16)	MER5B|DNA|hAT-Charlie	67116	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
28456	chr10	49188151	49188680	+	0	NA	promoter-TSS (NM_001288743)	promoter-TSS (NM_001288743)	-24	NM_001288743	170371		NM_001010863	ENSG00000204161	TMEM273	C10orf128	transmembrane protein 273	protein-coding
27397	chr10	31327121	31327380	+	0	NA	intron (NM_001323675, intron 1 of 6)	AluSq2|SINE|Alu	5590	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
42854	chr11	73248671	73248830	+	0	NA	Intergenic	Intergenic	-15755	NM_001277205	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
43334	chr11	76493871	76494230	+	0	NA	intron (NM_001300942, intron 9 of 21)	MER52A|LTR|ERV1	49025	NM_020193	56946		NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY transcriptional repressor, BRCA2 interacting	protein-coding
88987	chr16	87926321	87926580	+	0	NA	intron (NM_001739, intron 2 of 6)	intron (NM_001739, intron 2 of 6)	10079	NM_001367225	763		NM_001739	ENSG00000174990	CA5A	CA5|CA5AD|CAV|CAVA|GS1-21A4.1	carbonic anhydrase 5A	protein-coding
112354	chr19	5955201	5955800	+	0	NA	intron (NM_003624, intron 2 of 16)	intron (NM_003624, intron 2 of 16)	22640	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
3431	chr1	15858101	15858700	+	0	NA	intron (NM_015001, intron 1 of 14)	L1MC4|LINE|L1	-10253	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
108302	chr18	63365151	63365250	+	0	NA	intron (NM_002035, intron 1 of 9)	AluYj4|SINE|Alu	2006	NM_002035	2531		NM_002035	ENSG00000119537	KDSR	DHSR|EKVP4|FVT1|SDR35C1	3-ketodihydrosphingosine reductase	protein-coding
122301	chr19	49108221	49108750	+	0	NA	3' UTR (NM_001301069, exon 10 of 10)	3' UTR (NM_001301069, exon 10 of 10)	-5885	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
44078	chr11	95680401	95681100	+	0	NA	Intergenic	MIR3|SINE|MIR	109032	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
62098	chr13	94710851	94710950	+	0	NA	3' UTR (NM_007084, exon 1 of 1)	3' UTR (NM_007084, exon 1 of 1)	1645	NM_007084	11166		NM_007084	ENSG00000125285	SOX21	SOX25	SRY-box transcription factor 21	protein-coding
40741	chr11	64829651	64830150	+	0	NA	exon (NM_017525, exon 30 of 37)	exon (NM_017525, exon 30 of 37)	14753	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
179480	chr4	184533751	184533850	+	0	NA	intron (NR_147158, intron 1 of 2)	intron (NR_147158, intron 1 of 2)	3783	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
145112	chr20	38778571	38778730	+	0	NA	Intergenic	Intergenic	-27047	NM_001172735	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
63750	chr14	21234951	21235330	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	-28240	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
170331	chr3	184379821	184380930	+	0	NA	promoter-TSS (NM_001290026)	promoter-TSS (NM_001290026)	65	NM_001304473	8646		NM_003741	ENSG00000090539	CHRD	-	chordin	protein-coding
167233	chr3	128483821	128484500	+	0	NA	intron (NM_032638, intron 3 of 5)	intron (NM_032638, intron 3 of 5)	3761	NM_001145662	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
136258	chr2	174634241	174635850	+	0	NA	promoter-TSS (NM_001375833)	promoter-TSS (NM_001375833)	-440	NM_001375839	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
144276	chr20	34581671	34582030	+	0	NA	intron (NM_080476, intron 9 of 11)	intron (NM_080476, intron 9 of 11)	23132	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
233711	chrX	1306701	1306900	+	0	NA	TTS (NM_001161531)	TTS (NM_001161531)	12882	NR_037461	100500894		NR_037461	ENSG00000265658	MIR3690	MIR3690-1|MIR3690-2|hsa-mir-3690-1|hsa-mir-3690-2|mir-3690-1|mir-3690-2	microRNA 3690	ncRNA
219073	chr8	65826701	65827100	+	0	NA	intron (NM_001242318, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	15164	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
113962	chr19	10796121	10796380	+	0	NA	intron (NM_004945, intron 10 of 19)	intron (NM_004945, intron 10 of 19)	15996	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
200429	chr6	135006471	135006830	+	0	NA	intron (NM_006620, intron 4 of 17)	intron (NM_006620, intron 4 of 17)	-27218	NR_037435	100500880		NR_037435	ENSG00000283409	MIR3662	mir-3662	microRNA 3662	ncRNA
17535	chr1	156779971	156780330	+	0	NA	intron (NM_005973, intron 1 of 6)	AluSz|SINE|Alu	12615	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
106771	chr18	23712451	23712900	+	0	NA	intron (NM_198129, intron 1 of 74)	intron (NM_198129, intron 1 of 74)	23222	NM_001127717	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
82638	chr16	19072151	19072530	+	0	NA	intron (NR_163450, intron 2 of 4)	MER106B|DNA|hAT-Charlie	3693	NM_001370491	10229		NM_016138	ENSG00000167186	COQ7	CAT5|CLK-1|CLK1|COQ10D8|HMNR9	coenzyme Q7, hydroxylase	protein-coding
130427	chr2	85352321	85352900	+	0	NA	intron (NM_017750, intron 1 of 10)	AluJr|SINE|Alu	1918	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
165461	chr3	98687671	98687830	+	0	NA	Intergenic	L1PA7|LINE|L1	-44486	NM_001323362	10402		NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
239021	chrY	2949751	2949850	+	0	NA	intron (NM_001369710, intron 1 of 4)	AluJr|SINE|Alu	14419	NM_001369702	7544		NM_003411	ENSG00000067646	ZFY	ZNF911	zinc finger protein Y-linked	protein-coding
195699	chr6	38699551	38699950	+	0	NA	intron (NM_006708, intron 1 of 5)	MER11A|LTR|ERVK	3395	NM_006708	2739		NM_006708	ENSG00000124767	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
93380	chr17	18252121	18252580	+	0	NA	intron (NM_001256265, intron 9 of 28).2	intron (NM_001256265, intron 9 of 28).2	6388	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
188792	chr5	157858581	157859780	+	0	NA	promoter-TSS (NM_001195555)	promoter-TSS (NM_001195555)	-35	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
211048	chr7	102448801	102449200	+	0	NA	3' UTR (NM_001126340, exon 4 of 4)	3' UTR (NM_001126340, exon 4 of 4)	15425	NM_032831	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
170004	chr3	180601701	180602780	+	0	NA	promoter-TSS (NM_001288582)	promoter-TSS (NM_001288582)	77	NM_001288582	151613		NM_133462	ENSG00000163728	TTC14	DRDL5813|PRO19630	tetratricopeptide repeat domain 14	protein-coding
33585	chr10	119504601	119505500	+	0	NA	intron (NM_002925, intron 4 of 4)	intron (NM_002925, intron 4 of 4)	31483	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
224533	chr9	19227571	19227730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3043	NM_001330640	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
98452	chr17	47001001	47001730	+	0	NA	Intergenic	Intergenic	-22112	NM_203400	388394		NM_203400	ENSG00000179673	RPRML	-	reprimo like	protein-coding
151676	chr22	17105621	17105880	+	0	NA	intron (NM_001289905, intron 10 of 11)	intron (NM_001289905, intron 10 of 11)	15610	NM_031890	27439		NM_031890	ENSG00000183307	TMEM121B	CECR6	transmembrane protein 121B	protein-coding
161883	chr3	45942501	45942700	+	0	NA	promoter-TSS (NM_006564)	promoter-TSS (NM_006564)	-864	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
32610	chr10	103605701	103606380	+	0	NA	intron (NM_014631, intron 12 of 13)	intron (NM_014631, intron 12 of 13)	72175	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
150573	chr21	43168451	43168900	+	0	NA	promoter-TSS (NM_001314050).2	promoter-TSS (NM_001314050).2	-333	NM_000394	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
94804	chr17	31287371	31287730	+	0	NA	intron (NM_001042492, intron 36 of 57)	(TG)n|Simple_repeat|Simple_repeat	9689	NM_002544	4974		NM_002544	ENSG00000126861	OMG	OMGP	oligodendrocyte myelin glycoprotein	protein-coding
48280	chr12	8795471	8795630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-27071	NM_144670	144568		NM_144670	ENSG00000166535	A2ML1	CPAMD9|OMS|p170	alpha-2-macroglobulin like 1	protein-coding
177710	chr4	122131501	122132100	+	0	NA	Intergenic	HSMAR2|DNA|TcMar-Mariner	-20531	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
103681	chr17	78797871	78798380	+	0	NA	intron (NR_169582, intron 20 of 21)	(AC)n|Simple_repeat|Simple_repeat	-15783	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
40978	chr11	65379871	65380100	+	0	NA	intron (NR_147972, intron 4 of 8)	intron (NR_147972, intron 4 of 8)	1986	NM_001352384	283130		NM_182556	ENSG00000162241	SLC25A45	-	solute carrier family 25 member 45	protein-coding
51007	chr12	49673801	49674750	+	0	NA	intron (NM_175736, intron 1 of 25)	intron (NM_175736, intron 1 of 25)	33130	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
99861	chr17	55895401	55895600	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	144395	NM_001102402	58488		NM_021213	ENSG00000141179	PCTP	PC-TP|STARD2	phosphatidylcholine transfer protein	protein-coding
168813	chr3	152217621	152218880	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-12821	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
192636	chr6	26136471	26136630	+	0	NA	Intergenic	Intergenic	12378	NM_003512	8334		NM_003512	ENSG00000180573	H2AC6	H2A/l|H2AFL|HIST1H2AC|dJ221C16.4	H2A clustered histone 6	protein-coding
222237	chr8	133136771	133137630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-34598	NM_001045557	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
41563	chr11	66324671	66324830	+	0	NA	Intergenic	Intergenic	-7706	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
99168	chr17	49403221	49403900	+	0	NA	TTS (NM_002634)	TTS (NM_002634)	11298	NM_001281496	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
98234	chr17	46159321	46159580	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	33332	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
213069	chr7	131077711	131078550	+	0	NA	intron (NR_109852, intron 2 of 5)	L1MB3|LINE|L1	28900	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
99400	chr17	49996401	49997250	+	0	NA	Intergenic	CpG	-1601	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
196448	chr6	43504101	43504300	+	0	NA	intron (NM_080604, intron 9 of 9)	AluSc8|SINE|Alu	6143	NM_001012974	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
28890	chr10	62814271	62814430	+	0	NA	exon (NM_001136179, exon 3 of 3)	exon (NM_001136179, exon 3 of 3)	2016	NM_001321037	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
66151	chr14	60328801	60329000	+	0	NA	Intergenic	Intergenic	5704	NR_146481	101927729		NR_146481	ENSG00000258556	LINC02322	-	long intergenic non-protein coding RNA 2322	ncRNA
173889	chr4	24579401	24580000	+	0	NA	intron (NM_001358, intron 1 of 13)	MIR|SINE|MIR	4854	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
56422	chr12	113331301	113331500	+	0	NA	intron (NR_152403, intron 2 of 15)	AluSz6|SINE|Alu	3709	NM_001330466	80024		NM_024959	ENSG00000089060	SLC8B1	NCKX6|NCLX|SLC24A6	solute carrier family 8 member B1	protein-coding
192055	chr6	16526351	16526450	+	0	NA	intron (NM_000332, intron 5 of 8)	intron (NM_000332, intron 5 of 8)	233784	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
86062	chr16	57589151	57590150	+	0	NA	Intergenic	L1ME3F|LINE|L1	-30088	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
6137	chr1	27369001	27370100	+	0	NA	intron (NM_173452, intron 6 of 6)	MIRb|SINE|MIR	-2589	NM_004672	9064		NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
190353	chr5	179700611	179701200	+	0	NA	intron (NM_001363993, intron 2 of 15)	AluY|SINE|Alu	1938	NM_001746	821		NM_001746	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
112866	chr19	7598271	7598630	+	0	NA	intron (NM_020902, intron 1 of 16)	intron (NM_020902, intron 1 of 16)	2587	NM_001080429	57662		NM_020902	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA|PPP1R80	calmodulin regulated spectrin associated protein family member 3	protein-coding
78730	chr15	98700101	98700900	+	0	NA	intron (NM_000875, intron 1 of 20)	MER5A|DNA|hAT-Charlie	-49279	NR_126453	104472848		NR_126453		IRAIN	IGF1R-AS|IGF1RAS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
220985	chr8	115446651	115447150	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	221113	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
79887	chr16	1542421	1542680	+	0	NA	intron (NM_024600, intron 2 of 2)	intron (NM_024600, intron 2 of 2)	8884	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
49586	chr12	27022101	27023350	+	0	NA	non-coding (NR_073464, exon 1 of 4)	non-coding (NR_073464, exon 1 of 4)	167	NM_004264	9412		NM_004264	ENSG00000152944	MED21	SRB7|SURB7|hSrb7	mediator complex subunit 21	protein-coding
10077	chr1	58783501	58786200	+	0	NA	promoter-TSS (NR_034014)	promoter-TSS (NR_034014)	-301	NR_034015	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
237505	chrX	119999351	119999950	+	0	NA	Intergenic	Intergenic	15901	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
46094	chr11	122850031	122850750	+	0	NA	intron (NM_019604, intron 2 of 9)	intron (NM_019604, intron 2 of 9)	11890	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
21722	chr1	206777151	206777550	+	0	NA	intron (NM_153758, intron 1 of 6)	AluYh3|SINE|Alu	-4856	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
135238	chr2	159506801	159507300	+	0	NA	intron (NM_001289975, intron 2 of 35)	intron (NM_001289975, intron 2 of 35)	-108244	NR_110588	643072		NR_110587	ENSG00000224152	BAZ2B-AS1	lnc-BAZ2B	BAZ2B antisense RNA 1	ncRNA
28865	chr10	62688471	62688630	+	0	NA	Intergenic	LTR50|LTR|ERVL	-116170	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
146085	chr20	47544321	47544930	+	0	NA	intron (NM_181659, intron 1 of 22)	L1M8|LINE|L1	42738	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
66858	chr14	64984921	64985180	+	0	NA	intron (NM_001202559, intron 3 of 13)	intron (NM_001202559, intron 3 of 13)	-1845	NM_002028	2342		NM_002028	ENSG00000257365	FNTB	FPTB	farnesyltransferase, CAAX box, subunit beta	protein-coding
72905	chr15	40345671	40345830	+	0	NA	Intergenic	Intergenic	-4783	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
94928	chr17	32005351	32005730	+	0	NA	Intergenic	Intergenic	-1843	NM_001321350	114659		NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
17633	chr1	157126751	157127050	+	0	NA	intron (NM_001145312, intron 4 of 4)	intron (NM_001145312, intron 4 of 4)	-1462	NR_001560	360155		NR_001560	ENSG00000235700	CYCSP52	HC6|HCP2	CYCS pseudogene 52	pseudo
92313	chr17	8129571	8129730	+	0	NA	Intergenic	AluSg|SINE|Alu	-5544	NM_001165967	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
175129	chr4	55336271	55336430	+	0	NA	Intergenic	Intergenic	-9892	NM_024592	79644		NM_024592	ENSG00000128039	SRD5A3	CDG1P|CDG1Q|KRIZI|S5AR|S5AR 3|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
81508	chr16	8961071	8961230	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	2756	NM_003470	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
158172	chr22	50215001	50215800	+	0	NA	intron (NM_031454, intron 5 of 8)	intron (NM_031454, intron 5 of 8)	14389	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
71933	chr15	22949101	22949430	+	0	NA	intron (NM_001287810, intron 1 of 31)	intron (NM_001287810, intron 1 of 31)	31103	NM_001324125	23191		NM_014608	ENSG00000273749	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
69876	chr14	99315471	99316500	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-43788	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
70779	chr14	103512701	103513330	+	0	NA	Intergenic	Intergenic	9815	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
110736	chr19	2324571	2326130	+	0	NA	intron (NM_016199, intron 2 of 3)	intron (NM_016199, intron 2 of 3)	3236	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
185515	chr5	131328001	131328300	+	0	NA	intron (NM_001375633, intron 2 of 5)	MSTD|LTR|ERVL-MaLR	64097	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
156205	chr22	40319221	40319950	+	0	NA	intron (NM_015088, intron 19 of 20)	AluY|SINE|Alu	-26915	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
33683	chr10	119896651	119896750	+	0	NA	intron (NR_037771, intron 1 of 17)	intron (NR_037771, intron 1 of 17)	3970	NM_007190	11196		NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A|iPLA1A|iPLA1beta	SEC23 interacting protein	protein-coding
207804	chr7	50290171	50290330	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-13814	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
222548	chr8	140600351	140600450	+	0	NA	intron (NM_012154, intron 1 of 18)	AluSp|SINE|Alu	35233	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
150342	chr21	42136671	42136830	+	0	NA	intron (NM_173568, intron 20 of 21)	AluSc|SINE|Alu	-28216	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
95900	chr17	38893531	38894730	+	0	NA	intron (NM_006148, intron 3 of 6)	intron (NM_006148, intron 3 of 6)	-20849	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
58449	chr12	132069221	132069480	+	0	NA	intron (NM_015409, intron 50 of 52)	intron (NM_015409, intron 50 of 52)	-14933	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
104637	chr17	81444251	81444550	+	0	NA	exon (NM_001291324, exon 7 of 29)	exon (NM_001291324, exon 7 of 29)	6788	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
234639	chrX	19990491	19991700	+	0	NA	Intergenic	CpG	-1316	NR_024440	729609		NR_024440		LOC729609	-	uncharacterized LOC729609	ncRNA
41690	chr11	66631251	66632100	+	0	NA	intron (NM_001198846, intron 1 of 1)	AluSz|SINE|Alu	-6942	NM_001198843	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
145686	chr20	45003971	45004780	+	0	NA	intron (NM_006282, intron 9 of 10)	AluSz|SINE|Alu	37863	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
106893	chr18	24491901	24492550	+	0	NA	Intergenic	Intergenic	31588	NM_021624	59340		NM_021624	ENSG00000134489	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
35270	chr11	912321	912580	+	0	NA	intron (NM_001142675, intron 1 of 12)	intron (NM_001142675, intron 1 of 12)	-1640	NM_001142674	66005		NM_023947	ENSG00000177830	CHID1	GL008|SI-CLP|SICLP	chitinase domain containing 1	protein-coding
54305	chr12	89461621	89462280	+	0	NA	intron (NR_037659, intron 8 of 11)	intron (NR_037659, intron 8 of 11)	62846	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
201300	chr6	144345851	144346180	+	0	NA	intron (NM_007124, intron 1 of 73)	AluSx|SINE|Alu	54278	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
5374	chr1	25424901	25425200	+	0	NA	Intergenic	AluSx|SINE|Alu	-4136	NM_138617	6006		NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHCe(152N)|RHE|RHIXB|RHNA|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII|SLC42A4	Rh blood group CcEe antigens	protein-coding
14977	chr1	148014301	148015100	+	0	NA	intron (NR_111936, intron 1 of 9)	intron (NR_111936, intron 1 of 9)	256	NR_111936	100034743		NR_003377		PDZK1P1	PDZK1P2	PDZ domain containing 1 pseudogene 1	pseudo
91726	chr17	6649271	6649850	+	0	NA	intron (NM_016060, intron 3 of 3)	L2|LINE|L2	2045	NM_016060	51003		NM_016060	ENSG00000108590	MED31	3110004H13Rik|CGI-125|SEP10|Soh1	mediator complex subunit 31	protein-coding
219218	chr8	66688801	66689300	+	0	NA	intron (NM_001204173, intron 2 of 18)	intron (NM_001204173, intron 2 of 18)	21454	NM_001204173	100533105		NM_001204173	ENSG00000288602	C8orf44-SGK3	-	C8orf44-SGK3 readthrough	protein-coding
41665	chr11	66578971	66579580	+	0	NA	Intergenic	Intergenic	-10669	NM_003793	8722		NM_003793	ENSG00000174080	CTSF	CATSF|CLN13	cathepsin F	protein-coding
90028	chr16	89899251	89899650	+	0	NA	intron (NM_014972, intron 11 of 17)	AluSp|SINE|Alu	-19412	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
203053	chr6	166168251	166168550	+	0	NA	promoter-TSS (NM_001366285)	promoter-TSS (NM_001366285)	255	NM_001366286	6862		NM_003181	ENSG00000164458	TBXT	SAVA|T|TFT	T-box transcription factor T	protein-coding
130265	chr2	84863301	84863780	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	17544	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
111534	chr19	4024951	4026080	+	0	NA	intron (NM_015897, intron 3 of 10)	intron (NM_015897, intron 3 of 10)	17779	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
224328	chr9	6755451	6755750	+	0	NA	intron (NM_001146696, intron 1 of 17)	intron (NM_001146696, intron 1 of 17)	-2373	NM_001353999	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
147396	chr20	58700501	58700700	+	0	NA	intron (NM_001204872, intron 6 of 12)	intron (NM_001204872, intron 6 of 12)	7800	NM_024663	79716		NM_024663	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase like 1	protein-coding
217006	chr8	23165751	23166330	+	0	NA	Intergenic	MER21-int|LTR|ERVL	-2013	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
39202	chr11	57493221	57494080	+	0	NA	intron (NM_003627, intron 8 of 14)	intron (NM_003627, intron 8 of 14)	21259	NM_001198810	8501		NM_003627	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	solute carrier family 43 member 1	protein-coding
83040	chr16	22316151	22317580	+	0	NA	intron (NM_018119, intron 10 of 20).2	intron (NM_018119, intron 10 of 20).2	19456	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
94364	chr17	28913471	28913930	+	0	NA	intron (NM_020889, intron 8 of 8)	intron (NM_020889, intron 8 of 8)	-10621	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
53513	chr12	66755901	66756100	+	0	NA	intron (NM_001379351, intron 1 of 22)	LTR16D|LTR|ERVL	48269	NM_001379347	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
99301	chr17	49798721	49799580	+	0	NA	intron (NM_001199155, intron 4 of 13)	intron (NM_001199155, intron 4 of 13)	10469	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
218580	chr8	55805871	55806230	+	0	NA	intron (NM_001317902, intron 9 of 10)	AluJr|SINE|Alu	32604	NM_024831	96764		NM_024831	ENSG00000137574	TGS1	NCOA6IP|PIMT|PIPMT	trimethylguanosine synthase 1	protein-coding
42039	chr11	67445501	67445730	+	0	NA	Intergenic	L2a|LINE|L2	-1794	NM_001018070	57175		NM_020441	ENSG00000172725	CORO1B	CORONIN-2	coronin 1B	protein-coding
122082	chr19	48733151	48733650	+	0	NA	intron (NM_017805, intron 4 of 11)	intron (NM_017805, intron 4 of 11)	7210	NM_017805	54922		NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
15562	chr1	150553571	150554830	+	0	NA	intron (NM_001288608, intron 6 of 19)	intron (NM_001288608, intron 6 of 19)	2271	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
108081	chr18	59953501	59953900	+	0	NA	Intergenic	AluSq2|SINE|Alu	53704	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
105979	chr18	5629121	5629380	+	0	NA	promoter-TSS (NM_001281535)	promoter-TSS (NM_001281535)	-259	NM_001281535	23136		NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1 like 3	protein-coding
235977	chrX	53733501	53733800	+	0	NA	Intergenic	AluSq2|SINE|Alu	-46931	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
204563	chr7	5188571	5188930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1483	NM_015610	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
237164	chrX	107629651	107629750	+	0	NA	intron (NM_001204402, intron 1 of 3)	intron (NM_001204402, intron 1 of 3)	1190	NM_002764	5631		NM_002764	ENSG00000147224	PRPS1	ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI	phosphoribosyl pyrophosphate synthetase 1	protein-coding
17354	chr1	156498101	156499150	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	2150	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
99972	chr17	57553901	57554300	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	-30503	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
80194	chr16	2140251	2141200	+	0	NA	Intergenic	AluSc5|SINE|Alu	-4596	NR_037467	100500916		NR_037467	ENSG00000264397	MIR3180-5	mir-3180-5	microRNA 3180-5	ncRNA
211510	chr7	105289821	105290080	+	0	NA	intron (NM_001350742, intron 2 of 16)	Tigger1|DNA|TcMar-Tigger	8829	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
101011	chr17	64711421	64711780	+	0	NA	Intergenic	MIRb|SINE|MIR	-49293	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
54456	chr12	91879601	91879800	+	0	NA	Intergenic	Intergenic	262013	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
43555	chr11	82972601	82972800	+	0	NA	TTS (NM_001286061)	TTS (NM_001286061)	61574	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
164128	chr3	56718021	56718480	+	0	NA	Intergenic	HERV9NC-int|LTR|ERV1	-34985	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
218669	chr8	57995551	57995650	+	0	NA	intron (NM_147189, intron 1 of 4)	intron (NM_147189, intron 1 of 4)	1077	NM_147189	90362		NM_147189	ENSG00000169122	FAM110B	C8orf72	family with sequence similarity 110 member B	protein-coding
115795	chr19	16375451	16376000	+	0	NA	intron (NR_047665, intron 21 of 22)	intron (NR_047665, intron 21 of 22)	50899	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
21214	chr1	204087601	204088200	+	0	NA	intron (NM_005686, intron 1 of 13)	MIRc|SINE|MIR	14785	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
155715	chr22	39117201	39118930	+	0	NA	Intergenic	PrimLTR79|LTR|ERV1	20821	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
133357	chr2	117023551	117023650	+	0	NA	Intergenic	Intergenic	-791091	NM_006773	8886		NM_006773	ENSG00000088205	DDX18	Has1|MrDb	DEAD-box helicase 18	protein-coding
128557	chr2	60887771	60887930	+	0	NA	intron (NM_001291746, intron 1 of 9)	intron (NM_001291746, intron 1 of 9)	6276	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
150193	chr21	39318371	39318730	+	0	NA	intron (NR_046655, intron 2 of 2)	intron (NR_046655, intron 2 of 2)	2843	NR_046655	100874093		NR_046655	ENSG00000238141	BRWD1-AS1	-	BRWD1 antisense RNA 1	ncRNA
110113	chr19	1564501	1564700	+	0	NA	intron (NM_203304, intron 1 of 1)	intron (NM_203304, intron 1 of 1)	3458	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
40162	chr11	62881201	62883450	+	0	NA	intron (NM_001012662, intron 5 of 11)	intron (NM_001012662, intron 5 of 11)	626	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
167914	chr3	136166051	136166700	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSx1|SINE|Alu	28093	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
55994	chr12	110293601	110294330	+	0	NA	intron (NM_170665, intron 4 of 19)	AluSx1|SINE|Alu	12718	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
203359	chr6	170305751	170307680	+	0	NA	promoter-TSS (NM_001286381).2	promoter-TSS (NM_001286381).2	-7	NM_001286381	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
147368	chr20	58406171	58406880	+	0	NA	intron (NM_001195677, intron 1 of 2)	intron (NM_001195677, intron 1 of 2)	17296	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
38250	chr11	36507171	36507330	+	0	NA	intron (NM_145803, intron 1 of 7)	intron (NM_145803, intron 1 of 7)	3022	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
84679	chr16	30767751	30768630	+	0	NA	exon (NM_001286572, exon 13 of 20)	exon (NM_001286572, exon 13 of 20)	5868	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
202267	chr6	157020571	157022600	+	0	NA	intron (NM_001371656, intron 6 of 20)	CpG	-14842	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
14624	chr1	145454451	145454750	+	0	NA	Intergenic	CpG	-48822	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
85646	chr16	56041831	56042030	+	0	NA	Intergenic	Intergenic	-85899	NM_001190158	221223		NM_145024	ENSG00000159398	CES5A	CAUXIN|CES4C1|CES5|CES7|HEL126	carboxylesterase 5A	protein-coding
132269	chr2	104843171	104843330	+	0	NA	intron (NR_037883, intron 1 of 3)	CpG	8226	NR_131234	100506421		NR_037883	ENSG00000233639	PANTR1	LINC01158|linc-Brn1a|linc-POU3F3	POU3F3 adjacent non-coding transcript 1	ncRNA
180891	chr5	34043451	34043750	+	0	NA	promoter-TSS (NM_181435)	promoter-TSS (NM_181435)	-387	NM_030945	114899		NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and TNF related 3	protein-coding
3360	chr1	15595021	15595880	+	0	NA	Intergenic	Intergenic	-10399	NM_024758	79814		NM_024758	ENSG00000116771	AGMAT	-	agmatinase (putative)	protein-coding
205072	chr7	6623751	6624550	+	0	NA	3' UTR (NM_017560, exon 3 of 3)	3' UTR (NM_017560, exon 3 of 3)	8540	NM_001353546	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
68965	chr14	91420671	91420830	+	0	NA	Intergenic	Intergenic	-2930	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
26958	chr10	26604351	26604650	+	0	NA	Intergenic	Intergenic	14635	NR_026793	645528		NR_026793	ENSG00000290444	FAM238A	C10orf50|LINC00264|NCRNA00264|bA128B16.2	family with sequence similarity 238 member A	ncRNA
61793	chr13	75324401	75324900	+	0	NA	intron (NM_014832, intron 10 of 20)	intron (NM_014832, intron 10 of 20)	84062	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
190059	chr5	177595601	177596100	+	0	NA	3' UTR (NM_017510, exon 5 of 5)	3' UTR (NM_017510, exon 5 of 5)	3647	NM_017510	54732		NM_017510	ENSG00000184840	TMED9	GMP25|HSGP25L2G|p24a2|p24alpha2|p25	transmembrane p24 trafficking protein 9	protein-coding
93481	chr17	18920771	18921280	+	0	NA	intron (NM_001353102, intron 9 of 11)	AluJb|SINE|Alu	-29651	NM_001282417	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
234701	chrX	20442421	20442950	+	0	NA	Intergenic	Intergenic	-175776	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
108200	chr18	63122471	63122630	+	0	NA	TTS (NM_000633)	TTS (NM_000633)	197219	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
182430	chr5	62223401	62224430	+	0	NA	Intergenic	Intergenic	-82247	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
29976	chr10	73733251	73733550	+	0	NA	Intergenic	CpG	2838	NR_048575	2749		NR_048575	ENSG00000291043	GLUD1P3	C10orf102|GLUDP3	glutamate dehydrogenase 1 pseudogene 3	pseudo
158404	chr22	50522301	50522500	+	0	NA	exon (NM_152299, exon 15 of 20)	exon (NM_152299, exon 15 of 20)	3198	NM_005138	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
15291	chr1	149835721	149835980	+	0	NA	intron (NR_168447, intron 1 of 1)	intron (NR_168447, intron 1 of 1)	3193	NR_168446	554313		NM_001034077	ENSG00000270276	H4C15	H4-16|H4/o|H4C1|H4C11|H4C12|H4C13|H4C14|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST2H4B	H4 clustered histone 15	protein-coding
34594	chr10	133258901	133259840	+	0	NA	Intergenic	Intergenic	-11485	NR_108079	101927671		NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
11299	chr1	89275621	89276030	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-2965	NM_052942	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
112898	chr19	7633851	7634330	+	0	NA	promoter-TSS (NM_174895)	promoter-TSS (NM_174895)	-371	NM_174895	126006		NM_174895	ENSG00000174788	PCP2	GPSM4|PCD5	Purkinje cell protein 2	protein-coding
222989	chr8	143249921	143250580	+	0	NA	exon (NM_001271156, exon 2 of 3)	exon (NM_001271156, exon 2 of 3)	3311	NM_173832	286128		NM_173832	ENSG00000181638	ZFP41	ZNF753|zfp-41	ZFP41 zinc finger protein	protein-coding
152818	chr22	21863371	21863800	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	4060	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
102064	chr17	74919371	74920050	+	0	NA	exon (NM_001282489, exon 2 of 3)	exon (NM_001282489, exon 2 of 3)	3545	NM_173477	124590		NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	USH1 protein network component sans	protein-coding
175994	chr4	81724921	81725350	+	0	NA	Intergenic	Intergenic	-253228	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
68990	chr14	91480901	91481180	+	0	NA	intron (NM_001284281, intron 2 of 12)	AluJr4|SINE|Alu	29270	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
73528	chr15	43803871	43804300	+	0	NA	TTS (NM_005926)	TTS (NM_005926)	3486	NM_016400	25764		NM_016400	ENSG00000242028	HYPK	C15orf63|HSPC136	huntingtin interacting protein K	protein-coding
60242	chr13	40572521	40573230	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	-91869	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
213445	chr7	138720351	138720450	+	0	NA	intron (NM_130840, intron 18 of 20)	intron (NM_130840, intron 18 of 20)	-19038	NM_001139456	136306		NM_174959	ENSG00000157703	SVOPL	SLC22B5	SVOP like	protein-coding
32884	chr10	110149571	110150300	+	0	NA	intron (NR_164121, intron 1 of 2)	intron (NR_164121, intron 1 of 2)	2045	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
225727	chr9	37022471	37022830	+	0	NA	intron (NR_103999, intron 1 of 8)	intron (NR_103999, intron 1 of 8)	11618	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
119388	chr19	40225471	40225630	+	0	NA	intron (NM_024877, intron 1 of 4)	L2b|LINE|L2	1139	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
169824	chr3	177138671	177138830	+	0	NA	intron (NM_001374329, intron 1 of 15)	HAL1ME|LINE|L1	57728	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
211767	chr7	107212701	107213300	+	0	NA	intron (NM_001379514, intron 17 of 19)	L1MA7|LINE|L1	43997	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
3415	chr1	15791821	15792630	+	0	NA	Intergenic	Intergenic	15474	NM_001089591	440567		NM_001089591	ENSG00000233954	UQCRHL	hCG25371	ubiquinol-cytochrome c reductase hinge protein like	protein-coding
58813	chr12	132817051	132817780	+	0	NA	intron (NM_005895, intron 2 of 23)	intron (NM_005895, intron 2 of 23)	10974	NM_005895	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
191981	chr6	16159201	16159400	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	17744	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
200135	chr6	130259351	130260390	+	0	NA	intron (NM_001258275, intron 2 of 13)	L1MD2|LINE|L1	-36919	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
180397	chr5	10307471	10308100	+	0	NA	5' UTR (NM_138809, exon 1 of 6)	5' UTR (NM_138809, exon 1 of 6)	117	NM_138809	134147		NM_138809	ENSG00000164237	CMBL	JS-1	carboxymethylenebutenolidase homolog	protein-coding
36346	chr11	3906151	3906600	+	0	NA	intron (NM_001382571, intron 1 of 9)	L2c|LINE|L2	50313	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
84861	chr16	31145201	31145400	+	0	NA	intron (NM_173502, intron 6 of 14)	AluY|SINE|Alu	4766	NM_173502	146547		NM_173502	ENSG00000178226	PRSS36	-	serine protease 36	protein-coding
176455	chr4	89300371	89301130	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	7050	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
83611	chr16	28197771	28198930	+	0	NA	intron (NM_015171, intron 1 of 23)	L1ME4a|LINE|L1	13615	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
89804	chr16	89533901	89535050	+	0	NA	intron (NM_003119, intron 9 of 16)	intron (NM_003119, intron 9 of 16)	26072	NM_003119	6687		NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7 matrix AAA peptidase subunit, paraplegin	protein-coding
172048	chr4	1013501	1014150	+	0	NA	intron (NM_001370296, intron 2 of 6)	intron (NM_001370296, intron 2 of 6)	1361	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
90398	chr17	1297021	1297280	+	0	NA	intron (NM_172367, intron 2 of 2)	MER5A1|DNA|hAT-Charlie	17488	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
198911	chr6	110020921	110021180	+	0	NA	Intergenic	MER74A|LTR|ERVL	42739	NM_005284	2830		NM_005284	ENSG00000146360	GPR6	-	G protein-coupled receptor 6	protein-coding
116403	chr19	17968501	17968950	+	0	NA	intron (NM_002248, intron 2 of 10)	intron (NM_002248, intron 2 of 10)	17423	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
194051	chr6	31851701	31851900	+	0	NA	Intergenic	LTR24B|LTR|ERV1	11021	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
48855	chr12	12403451	12404350	+	0	NA	intron (NM_058169, intron 2 of 3)	intron (NM_058169, intron 2 of 3)	46822	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
184899	chr5	112866421	112866880	+	0	NA	intron (NM_001204199, intron 4 of 4)	intron (NM_001204199, intron 4 of 4)	5363	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
75230	chr15	64860701	64861300	+	0	NA	intron (NM_001195059, intron 3 of 4)	intron (NM_001195059, intron 3 of 4)	19085	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
84400	chr16	30334101	30336680	+	0	NA	promoter-TSS (NR_002453)	promoter-TSS (NR_002453)	-16	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
133965	chr2	130609201	130609400	+	0	NA	Intergenic	L2a|LINE|L2	-2140	NM_001277083	653781		NM_001277083	ENSG00000222038	POTEJ	POTE2beta	POTE ankyrin domain family member J	protein-coding
84168	chr16	29804601	29807000	+	0	NA	promoter-TSS (NM_002383)	promoter-TSS (NM_002383)	-324	NM_001276275	4150		NM_002383	ENSG00000103495	MAZ	PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87	MYC associated zinc finger protein	protein-coding
207210	chr7	43647751	43648280	+	0	NA	intron (NM_001371315, intron 2 of 5)	intron (NM_001371315, intron 2 of 5)	64907	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
100707	chr17	63841171	63841530	+	0	NA	intron (NM_001098426, intron 1 of 12)	intron (NM_001098426, intron 1 of 12)	1116	NM_001330439	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
217494	chr8	29051551	29052050	+	0	NA	non-coding (NR_136758, exon 11 of 11)	non-coding (NR_136758, exon 11 of 11)	160486	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
57702	chr12	122856871	122857480	+	0	NA	exon (NM_003959, exon 18 of 32)	exon (NM_003959, exon 18 of 32)	21718	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
230709	chr9	128780371	128780530	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-6757	NM_001286772	54662		NM_018201	ENSG00000107021	TBC1D13	-	TBC1 domain family member 13	protein-coding
214100	chr7	143765701	143765980	+	0	NA	intron (NM_001363538, intron 2 of 11)	intron (NM_001363538, intron 2 of 11)	-8144	NM_178561	340307		NM_178561	ENSG00000271321	CTAGE6	CTAGE6P	CTAGE family member 6	protein-coding
78121	chr15	90348851	90349180	+	0	NA	non-coding (NR_028287, exon 1 of 2)	non-coding (NR_028287, exon 1 of 2)	432	NR_028287	23766		NM_032568		GABARAPL3	ATG8D	GABA type A receptor associated protein like 3 (pseudogene)	pseudo
8055	chr1	38857551	38857850	+	0	NA	intron (NM_022157, intron 1 of 6)	AluSz|SINE|Alu	2072	NM_001271851	64121		NM_022157	ENSG00000116954	RRAGC	GTR2|LNGODS|LNGOS|RAGC|TIB929	Ras related GTP binding C	protein-coding
111086	chr19	3182071	3182680	+	0	NA	Intergenic	AluY|SINE|Alu	-3555	NM_001321463	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
160443	chr3	28346871	28347330	+	0	NA	intron (NM_001271650, intron 1 of 8)	intron (NM_001271650, intron 1 of 8)	-1621	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
114606	chr19	12959201	12960130	+	0	NA	Intergenic	AluSz|SINE|Alu	-2442	NM_052850	90480		NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1|mL64	GADD45G interacting protein 1	protein-coding
31973	chr10	100742101	100742600	+	0	NA	intron (NM_001374303, intron 1 of 2)	CpG	-3232	NM_003987	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
30739	chr10	84176471	84176630	+	0	NA	exon (NM_207373, exon 2 of 3)	exon (NM_207373, exon 2 of 3)	2749	NM_207373	387695		NM_207373	ENSG00000188373	GPR15LG	AP-57|AP57|C10orf99|CSBF|GPR15L|UNQ1833	G protein-coupled receptor 15 ligand	protein-coding
92235	chr17	7907671	7908030	+	0	NA	intron (NM_001005271, intron 33 of 39)	intron (NM_001005271, intron 33 of 39)	1727	NR_003000	677763		NR_003000	ENSG00000252835	SCARNA21	ACA68|SCARNA21A	small Cajal body-specific RNA 21	ncRNA
91203	chr17	3910571	3911900	+	0	NA	intron (NM_002558, intron 1 of 11)	AluJb|SINE|Alu	5230	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
55068	chr12	96491571	96491750	+	0	NA	intron (NM_001367885, intron 1 of 68)	L2-3_Crp|LINE|L2	2083	NM_001367885	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
223285	chr8	143738901	143739100	+	0	NA	intron (NM_001381874, intron 2 of 13)	intron (NM_001381874, intron 2 of 13)	4861	NM_001381874	642574		NM_001381874	ENSG00000203499	IQANK1	CACClnc|FAM83H-AS1|FAM83HAS1|onco-lncRNA-3	IQ motif and ankyrin repeat containing 1	protein-coding
205168	chr7	7424421	7424900	+	0	NA	intron (NM_001037763, intron 25 of 34)	intron (NM_001037763, intron 25 of 34)	111213	NM_001037763	340267		NM_001037763	ENSG00000215018	COL28A1	COL28	collagen type XXVIII alpha 1 chain	protein-coding
26241	chr10	14601371	14601530	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	2951	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
85428	chr16	50354871	50355250	+	0	NA	intron (NM_013263, intron 2 of 16)	intron (NM_013263, intron 2 of 16)	13928	NM_001173984	29117		NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4|SMARCI1	bromodomain containing 7	protein-coding
137333	chr2	196132201	196133630	+	0	NA	TTS (NM_004226)	TTS (NM_004226)	38663	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
166358	chr3	112990671	112991650	+	0	NA	exon (NM_014170, exon 1 of 6)	exon (NM_014170, exon 1 of 6)	176	NM_014170	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
236091	chrX	56780901	56781300	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-43516	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
133851	chr2	128281971	128282530	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	36618	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
165523	chr3	100440921	100441180	+	0	NA	intron (NM_001085451, intron 2 of 3)	L2c|LINE|L2	39511	NM_001085451	348801		NM_001085451	ENSG00000206535	LNP1	NP3	leukemia NUP98 fusion partner 1	protein-coding
38770	chr11	47171871	47172950	+	0	NA	intron (NM_032389, intron 7 of 15)	intron (NM_032389, intron 7 of 15)	4469	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
21655	chr1	206686501	206687180	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	1935	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
158096	chr22	50000571	50001050	+	0	NA	exon (NM_001001694, exon 5 of 15)	exon (NM_001001694, exon 5 of 15)	11955	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
220492	chr8	100514851	100515550	+	0	NA	intron (NM_001270379, intron 5 of 5)	intron (NM_001270379, intron 5 of 5)	44559	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
118016	chr19	34177851	34178700	+	0	NA	intron (NM_001384434, intron 1 of 9).2	intron (NM_001384434, intron 1 of 9).2	5771	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
82282	chr16	15434371	15435380	+	0	NA	intron (NM_033201, intron 1 of 5).2	CpG	287	NM_033201	89927		NM_033201	ENSG00000166780	BMERB1	C16orf45|MINP	bMERB domain containing 1	protein-coding
114956	chr19	13993271	13994700	+	0	NA	intron (NM_002918, intron 1 of 20)	intron (NM_002918, intron 1 of 20)	12335	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
57348	chr12	121771221	121771780	+	0	NA	exon (NM_001080825, exon 8 of 12)	exon (NM_001080825, exon 8 of 12)	22188	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
46324	chr11	125348771	125349000	+	0	NA	intron (NR_168080, intron 3 of 10)	intron (NR_168080, intron 3 of 10)	-146329	NR_164146	403312		NM_203452	ENSG00000255537	LOC403312	-	putative uncharacterized protein MGC39545	ncRNA
78828	chr15	99720221	99721580	+	0	NA	Intergenic	L2c|LINE|L2	12537	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
149707	chr21	34024521	34024780	+	0	NA	Intergenic	L2c|LINE|L2	48268	NR_134561	101928126		NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
208830	chr7	73686871	73687430	+	0	NA	intron (NR_045512, intron 5 of 10)	AluJb|SINE|Alu	3553	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
30568	chr10	79862321	79862780	+	0	NA	Intergenic	Intergenic	35811	NM_001355263	283008		NM_001355263	ENSG00000228570	NUTM2E	FAM22E	NUT family member 2E	protein-coding
238883	chrX	154549921	154550180	+	0	NA	intron (NM_003639, intron 1 of 9)	L1MC5|LINE|L1	2203	NM_003639	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
226158	chr9	63819171	63819330	+	0	NA	promoter-TSS (NR_039689).3	promoter-TSS (NR_039689).3	-324	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
207037	chr7	39012971	39013150	+	0	NA	intron (NM_007252, intron 2 of 10)	L1PA2|LINE|L1	507	NR_138047	100689074		NR_138047		POU6F2-AS2	-	POU6F2 antisense RNA 2	ncRNA
137039	chr2	190850321	190851130	+	0	NA	Intergenic	Intergenic	-30096	NM_001256310	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
178254	chr4	143531071	143531850	+	0	NA	intron (NM_003601, intron 9 of 23)	MER20|DNA|hAT-Charlie	-16623	NR_104027	100128055		NR_104027	ENSG00000245112	SMARCA5-AS1	-	SMARCA5 antisense RNA 1	ncRNA
235808	chrX	49192721	49193480	+	0	NA	intron (NM_003179, intron 5 of 6)	intron (NM_003179, intron 5 of 6)	-5739	NR_046649	100873921		NR_046649	ENSG00000237341	SYP-AS1	-	SYP antisense RNA 1	ncRNA
101884	chr17	74328571	74328730	+	0	NA	intron (NM_153209, intron 2 of 19)	intron (NM_153209, intron 2 of 19)	2424	NM_153209	124602		NM_153209	ENSG00000196169	KIF19	KIF19A	kinesin family member 19	protein-coding
35750	chr11	2139071	2139850	+	0	NA	promoter-TSS (NM_000612)	promoter-TSS (NM_000612)	-71	NM_000612	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
23590	chr1	229674171	229674330	+	0	NA	Intergenic	LTR75|LTR|ERVL	48003	NM_014777	9816		NM_014777	ENSG00000135763	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis homolog	protein-coding
227748	chr9	93091451	93092050	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-4467	NM_032310	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
105690	chr18	2663901	2664100	+	0	NA	intron (NM_015295, intron 1 of 47)	AluYm1|SINE|Alu	8274	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
37642	chr11	22337701	22337900	+	0	NA	promoter-TSS (NM_020346)	promoter-TSS (NM_020346)	-581	NM_020346	57084		NM_020346	ENSG00000091664	SLC17A6	DNPI|VGLUT2	solute carrier family 17 member 6	protein-coding
205196	chr7	7709371	7709530	+	0	NA	intron (NM_002947, intron 2 of 7)	intron (NM_002947, intron 2 of 7)	9157	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
47931	chr12	6819301	6819700	+	0	NA	3' UTR (NM_000616, exon 10 of 10)	3' UTR (NM_000616, exon 10 of 10)	-2321	NM_014449	27239		NM_014449	ENSG00000250510	GPR162	A-2|GRCA	G protein-coupled receptor 162	protein-coding
108814	chr18	78642801	78643270	+	0	NA	Intergenic	Intergenic	-337240	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
110360	chr19	1899051	1899630	+	0	NA	Intergenic	Intergenic	-6059	NM_138422	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
18982	chr1	169108871	169110200	+	0	NA	intron (NM_001677, intron 1 of 5)	intron (NM_001677, intron 1 of 5)	2845	NM_001677	481		NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
230631	chr9	128643671	128643830	+	0	NA	intron (NM_052844, intron 1 of 8)	intron (NM_052844, intron 1 of 8)	13100	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
158068	chr22	49958001	49958200	+	0	NA	Intergenic	Intergenic	-2672	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
107380	chr18	46067521	46067780	+	0	NA	intron (NM_024430, intron 1 of 14)	MER57C1|LTR|ERV1	4610	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
189928	chr5	177384651	177384750	+	0	NA	intron (NM_003052, intron 1 of 12)	AluSq2|SINE|Alu	266	NM_003052	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
102408	chr17	75602471	75603600	+	0	NA	exon (NM_001309242, exon 17 of 63)	exon (NM_001309242, exon 17 of 63)	14977	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
23565	chr1	229410271	229410630	+	0	NA	Intergenic	Intergenic	23644	NM_001100	58		NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|CMYP2A|CMYP2B|CMYP2C|MPFD|NEM1|NEM2|NEM3|SHPM	actin alpha 1, skeletal muscle	protein-coding
231813	chr9	132414501	132414700	+	0	NA	intron (NM_001282957, intron 1 of 5)	intron (NM_001282957, intron 1 of 5)	4389	NM_207417	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
188238	chr5	151026401	151026600	+	0	NA	intron (NM_001329790, intron 3 of 5)	intron (NM_001329790, intron 3 of 5)	5909	NM_002084	2878		NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
166671	chr3	120093121	120093450	+	0	NA	intron (NM_001146156, intron 1 of 10)	intron (NM_001146156, intron 1 of 10)	1162	NM_001354596	2932		NM_002093	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding
97587	chr17	44105521	44105800	+	0	NA	intron (NM_001382393, intron 3 of 26)	intron (NM_001382393, intron 3 of 26)	-10252	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
20152	chr1	192601201	192601680	+	0	NA	Intergenic	L3|LINE|CR1	25667	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
46968	chr11	134742221	134742680	+	0	NA	intron (NR_147836, intron 1 of 1)	intron (NR_147836, intron 1 of 1)	6505	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
45875	chr11	119726171	119726630	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	2800	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
186186	chr5	134212671	134212980	+	0	NA	intron (NM_002715, intron 1 of 6)	Tigger1|DNA|TcMar-Tigger	12729	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
163781	chr3	52389301	52389700	+	0	NA	exon (NM_015512, exon 60 of 78)	exon (NM_015512, exon 60 of 78)	20508	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
171702	chr3	197802851	197802950	+	0	NA	intron (NM_001365715, intron 1 of 20)	intron (NM_001365715, intron 1 of 20)	11646	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
138515	chr2	207240121	207240380	+	0	NA	non-coding (NR_146555, exon 2 of 3)	non-coding (NR_146555, exon 2 of 3)	439	NR_146555	105373853		NR_146555	ENSG00000229647	MYOSLID	-	myocardin-induced smooth muscle lncRNA, inducer of differentiation	ncRNA
123315	chr19	53577271	53577630	+	0	NA	exon (NM_001253801, exon 5 of 5)	exon (NM_001253801, exon 5 of 5)	22143	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
145263	chr20	40688721	40689430	+	0	NA	5' UTR (NM_005461, exon 1 of 1)	5' UTR (NM_005461, exon 1 of 1)	161	NM_005461	9935		NM_005461	ENSG00000204103	MAFB	DURS3|KRML|MCTO	MAF bZIP transcription factor B	protein-coding
132137	chr2	101717121	101717830	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	19210	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
22304	chr1	213070171	213070690	+	0	NA	intron (NM_001349665, intron 1 of 10)	intron (NM_001349665, intron 1 of 10)	19189	NM_012424	26750		NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
202139	chr6	155103971	155104150	+	0	NA	intron (NM_001384546, intron 2 of 26)	(C)n|Simple_repeat|Simple_repeat	-2927	NM_001384547	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
237932	chrX	132194701	132194900	+	0	NA	Intergenic	LTR12C|LTR|ERV1	23233	NM_021183	57826		NM_021183	ENSG00000123728	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
115822	chr19	16471271	16472800	+	0	NA	promoter-TSS (NM_001258376)	promoter-TSS (NM_001258376)	-23	NR_047665	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
9128	chr1	45349271	45349430	+	0	NA	intron (NM_007170, intron 5 of 10)	intron (NM_007170, intron 5 of 10)	-8880	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
193561	chr6	30628151	30628450	+	0	NA	intron (NM_001318763, intron 5 of 9).6	intron (NM_001318763, intron 5 of 9).6	1426	NM_001031722	79969		NM_024909	ENSG00000137343	ATAT1	C6orf134|MEC17|Nbla00487|TAT|alpha-TAT|alpha-TAT1	alpha tubulin acetyltransferase 1	protein-coding
684	chr1	1385171	1385580	+	0	NA	TTS (NM_001350499)	TTS (NM_001350499)	-10168	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
121862	chr19	48258301	48258780	+	0	NA	TTS (NR_040599)	TTS (NR_040599)	-2594	NM_001351787	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
147431	chr20	58901301	58901750	+	0	NA	intron (NM_000516, intron 3 of 12)	intron (NM_000516, intron 3 of 12)	9362	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
62016	chr13	84136221	84136900	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-4042	NR_046871	100874128		NR_046871		LINC00333	NCRNA00333	long intergenic non-protein coding RNA 333	ncRNA
157430	chr22	45169771	45170330	+	0	NA	intron (NM_007172, intron 2 of 7)	LTR13A|LTR|ERVK	5379	NM_153645	10762		NM_007172	ENSG00000093000	NUP50	NPAP60|NPAP60L	nucleoporin 50	protein-coding
131585	chr2	96857171	96858780	+	0	NA	promoter-TSS (NM_016466)	promoter-TSS (NM_016466)	41	NM_016466	51239		NM_016466	ENSG00000213337	ANKRD39	-	ankyrin repeat domain 39	protein-coding
107234	chr18	36913021	36913280	+	0	NA	intron (NR_134585, intron 2 of 3)	MLT1D-int|LTR|ERVL-MaLR	10664	NR_134585	105372069		NR_134585	ENSG00000267039	LOC105372069	-	uncharacterized LOC105372069	ncRNA
66410	chr14	61512301	61512500	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	57794	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
105946	chr18	3610351	3610450	+	0	NA	TTS (NR_119377)	TTS (NR_119377)	6663	NR_119377	84777		NM_032691		DLGAP1-AS2	DLPAP1-AS2	DLGAP1 antisense RNA 2	ncRNA
187818	chr5	146751671	146752550	+	0	NA	intron (NM_001271899, intron 2 of 9)	L2a|LINE|L2	126647	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
65585	chr14	52015701	52015900	+	0	NA	intron (NM_007361, intron 14 of 21)	intron (NM_007361, intron 14 of 21)	26254	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
113182	chr19	8405671	8406030	+	0	NA	Intergenic	Intergenic	-7453	NM_001005415	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
228473	chr9	99868801	99869000	+	0	NA	Intergenic	Intergenic	37701	NR_038853	441461		NR_038853		STX17-DT	STX17-AS1	STX17 divergent transcript	ncRNA
18791	chr1	167587371	167587530	+	0	NA	Intergenic	Intergenic	-33688	NM_003851	8804		NM_003851	ENSG00000143162	CREG1	CREG	cellular repressor of E1A stimulated genes 1	protein-coding
70259	chr14	101710101	101710700	+	0	NA	Intergenic	Intergenic	-20037	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
90156	chr17	181051	181150	+	0	NA	intron (NM_003585, intron 1 of 8).2	CpG	550	NM_003585	8447		NM_003585	ENSG00000272636	DOC2B	DOC2BL	double C2 domain beta	protein-coding
232705	chr9	136550451	136551630	+	0	NA	Intergenic	Intergenic	3198	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
229645	chr9	124247551	124247650	+	0	NA	Intergenic	AluSz6|SINE|Alu	-10006	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
211748	chr7	107184601	107185030	+	0	NA	intron (NM_001244262, intron 3 of 10).2	intron (NM_001244262, intron 3 of 10).2	15812	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
170704	chr3	187935371	187936160	+	0	NA	Intergenic	Intergenic	40642	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
33644	chr10	119687851	119688280	+	0	NA	Intergenic	MER41A|LTR|ERV1	36685	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
188092	chr5	150322251	150322350	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-19395	NM_001012301	340075		NM_001012301	ENSG00000183876	ARSI	ASI|SPG66	arylsulfatase family member I	protein-coding
104930	chr17	81924271	81924530	+	0	NA	promoter-TSS (NM_032711)	promoter-TSS (NM_032711)	-934	NM_032711	4097		NM_002359	ENSG00000197063	MAFG	hMAF	MAF bZIP transcription factor G	protein-coding
131359	chr2	96180271	96181850	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-27356	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
201357	chr6	144665121	144665380	+	0	NA	intron (NM_001375323, intron 1 of 24)	intron (NM_001375323, intron 1 of 24)	82102	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
149882	chr21	35923871	35924230	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	37605	NR_144547	54036		NR_144547		PPP1R2P2	-	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2	pseudo
218856	chr8	60396901	60397180	+	0	NA	Intergenic	Intergenic	16778	NR_103854	100505532		NR_103854		LINC01301	-	long intergenic non-protein coding RNA 1301	ncRNA
216570	chr8	21917821	21918800	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-1352	NM_001100161	23039		NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
106071	chr18	9113501	9114380	+	0	NA	intron (NM_021074, intron 1 of 7)	LTR2|LTR|ERV1	11241	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
219773	chr8	81109321	81110100	+	0	NA	intron (NM_018440, intron 1 of 8)	MIR|SINE|MIR	2358	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
233011	chr9	137013151	137013850	+	0	NA	exon (NM_001606, exon 29 of 49)	exon (NM_001606, exon 29 of 49)	-13964	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
120864	chr19	45530701	45531200	+	0	NA	intron (NM_001017989, intron 1 of 1)	(T)n|Simple_repeat|Simple_repeat	23471	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
2196	chr1	8605551	8605880	+	0	NA	intron (NM_012102, intron 5 of 23)	AluSx|SINE|Alu	-110802	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
188149	chr5	150411201	150411900	+	0	NA	intron (NM_001025158, intron 1 of 5)	intron (NM_001025158, intron 1 of 5)	1206	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
39523	chr11	61082101	61082530	+	0	NA	Intergenic	Intergenic	-11648	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
25355	chr10	6382051	6382350	+	0	NA	Intergenic	Intergenic	31884	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
18266	chr1	161090671	161091280	+	0	NA	Intergenic	Intergenic	-1417	NM_030916	81607		NM_030916	ENSG00000143217	NECTIN4	EDSS1|LNIR|PRR4|PVRL4|nectin-4	nectin cell adhesion molecule 4	protein-coding
164804	chr3	69739271	69739450	+	0	NA	promoter-TSS (NM_001354607)	promoter-TSS (NM_001354607)	-104	NM_001354606	4286		NM_000248	ENSG00000187098	MITF	CMM8|COMMAD|MI|MITF-A|WS2|WS2A|bHLHe32	melanocyte inducing transcription factor	protein-coding
166945	chr3	125154651	125155250	+	0	NA	intron (NM_024628, intron 5 of 13)	Tigger7|DNA|TcMar-Tigger	-3398	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
142392	chr20	3819851	3821580	+	0	NA	5' UTR (NM_018347, exon 1 of 3)	5' UTR (NM_018347, exon 1 of 3)	168	NM_001204447	55317		NM_018347	ENSG00000125843	AP5S1	C20orf29	adaptor related protein complex 5 subunit sigma 1	protein-coding
44008	chr11	94768051	94768550	+	0	NA	promoter-TSS (NM_001301007)	promoter-TSS (NM_001301007)	-56	NM_130847	154810		NM_130847	ENSG00000166025	AMOTL1	JEAP	angiomotin like 1	protein-coding
155154	chr22	37673021	37673330	+	0	NA	Intergenic	Intergenic	-2461	NM_002305	3956		NM_002305	ENSG00000100097	LGALS1	GAL1|GBP	galectin 1	protein-coding
122734	chr19	50049751	50049850	+	0	NA	promoter-TSS (NR_027257)	promoter-TSS (NR_027257)	-789	NR_027257	400710		NR_027257	ENSG00000204666	ZNF473CR	-	ZNF473 cis regulating lncRNA	ncRNA
165090	chr3	71490701	71490900	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	51289	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
68492	chr14	88026901	88027300	+	0	NA	promoter-TSS (NR_110121)	promoter-TSS (NR_110121)	-788	NR_110121	101928791		NR_110121		LINC01147	-	long intergenic non-protein coding RNA 1147	ncRNA
99470	chr17	50162551	50163180	+	0	NA	Intergenic	L1MC5|LINE|L1	-3140	NM_000023	6442		NM_000023	ENSG00000108823	SGCA	50DAG|ADL|DAG2|DMDA2|LGMD2D|LGMDR3|SCARMD1|adhalin	sarcoglycan alpha	protein-coding
196838	chr6	47246621	47246880	+	0	NA	intron (NM_014452, intron 4 of 5)	intron (NM_014452, intron 4 of 5)	63155	NM_014452	27242		NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
202248	chr6	156911101	156911700	+	0	NA	intron (NM_001371656, intron 5 of 20)	intron (NM_001371656, intron 5 of 20)	-125027	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
45020	chr11	117017971	117019330	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	79778	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
171506	chr3	196631351	196632970	+	0	NA	intron (NR_132101, intron 1 of 1)	intron (NR_132101, intron 1 of 1)	427	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
213769	chr7	140656251	140657150	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-15240	NM_001318053	27147		NM_015689	ENSG00000146966	DENND2A	FAM31D|KIAA1277	DENN domain containing 2A	protein-coding
19693	chr1	181038071	181038800	+	0	NA	intron (NM_001310213, intron 3 of 6)	intron (NM_001310213, intron 3 of 6)	4452	NM_001385162	3140		NM_001531	ENSG00000153029	MR1	HLALS	major histocompatibility complex, class I-related	protein-coding
60118	chr13	38568471	38568630	+	0	NA	intron (NR_046999, intron 1 of 3)	L1PA16|LINE|L1	826	NR_046999	100874147		NR_046999		LINC00366	-	long intergenic non-protein coding RNA 366	ncRNA
219674	chr8	80510801	80511000	+	0	NA	intron (NM_023929, intron 2 of 6)	intron (NM_023929, intron 2 of 6)	24674	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
147347	chr20	58267571	58267930	+	0	NA	intron (NR_003505, intron 4 of 16)	L2b|LINE|L2	-39097	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
100882	chr17	64383321	64383580	+	0	NA	intron (NM_000442, intron 2 of 15)	intron (NM_000442, intron 2 of 15)	7410	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
117862	chr19	32458771	32459000	+	0	NA	intron (NM_207325, intron 12 of 18)	intron (NM_207325, intron 12 of 18)	52760	NM_207325	147991		NM_207325	ENSG00000178904	DPY19L3	-	dpy-19 like C-mannosyltransferase 3	protein-coding
110905	chr19	2758921	2759580	+	0	NA	intron (NM_003021, intron 9 of 11)	intron (NM_003021, intron 9 of 11)	-19174	NM_213568	29985		NM_144564	ENSG00000141873	SLC39A3	ZIP-3|ZIP3	solute carrier family 39 member 3	protein-coding
147223	chr20	57396351	57396530	+	0	NA	intron (NM_001291780, intron 4 of 4)	intron (NM_001291780, intron 4 of 4)	-3384	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
38934	chr11	47489651	47489950	+	0	NA	intron (NM_001376443, intron 1 of 13)	intron (NM_001376443, intron 1 of 13)	4721	NM_198700	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
83319	chr16	24721821	24722080	+	0	NA	intron (NM_001351850, intron 2 of 23)	L1ME2|LINE|L1	-7701	NM_001330520	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
180379	chr5	7868571	7869880	+	0	NA	promoter-TSS (NM_002454)	promoter-TSS (NM_002454)	77	NR_157174	4552		NM_002454	ENSG00000124275	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
170603	chr3	186959001	186959200	+	0	NA	intron (NM_173216, intron 1 of 7)	intron (NM_173216, intron 1 of 7)	28574	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
93790	chr17	20446921	20447330	+	0	NA	non-coding (NR_144552, exon 5 of 5)	non-coding (NR_144552, exon 5 of 5)	10301	NR_144552	339256		NR_144552	ENSG00000291195	NOS2P3	-	nitric oxide synthase 2 pseudogene 3	pseudo
184877	chr5	112551421	112551850	+	0	NA	Intergenic	Intergenic	-76801	NR_104672	102467214		NR_104672	ENSG00000250358	LINC02200	-	long intergenic non-protein coding RNA 2200	ncRNA
153403	chr22	24805821	24807250	+	0	NA	intron (NM_133454, intron 2 of 24)	CpG-18883	314	NM_133454	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
40908	chr11	65183451	65183750	+	0	NA	intron (NM_001198868, intron 4 of 21)	intron (NM_001198868, intron 4 of 21)	1672	NM_005186	823		NM_005186	ENSG00000014216	CAPN1	CANP|CANP1|CANPL1|SPG76|muCANP|muCL	calpain 1	protein-coding
51077	chr12	49945201	49946100	+	0	NA	Intergenic	LTR85c|LTR|Gypsy?	-5087	NM_000486	359		NM_000486	ENSG00000167580	AQP2	AQP-CD|NDI2|WCH-CD	aquaporin 2	protein-coding
177010	chr4	105808171	105808530	+	0	NA	intron (NM_024751, intron 5 of 11)	L2a|LINE|L2	18822	NR_125927	101929529		NR_125927	ENSG00000251175	GSTCD-AS1	-	GSTCD antisense RNA 1	ncRNA
60811	chr13	45339951	45342280	+	0	NA	promoter-TSS (NM_001286273)	promoter-TSS (NM_001286273)	68	NM_001286273	7178		NM_003295	ENSG00000133112	TPT1	HRF|TCTP|p02|p23	tumor protein, translationally-controlled 1	protein-coding
92058	chr17	7506501	7507330	+	0	NA	intron (NM_000937, intron 19 of 29)	AluSz|SINE|Alu	22549	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
122633	chr19	49827771	49827930	+	0	NA	intron (NM_030973, intron 3 of 17)	intron (NM_030973, intron 3 of 17)	-4168	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
27787	chr10	35459301	35459850	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	122701	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
229971	chr9	126725101	126725350	+	0	NA	Intergenic	AluJb|SINE|Alu	-79781	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
94874	chr17	31524121	31524530	+	0	NA	intron (NM_001346748, intron 7 of 12)	intron (NM_001346748, intron 7 of 12)	-10558	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
64530	chr14	24434801	24435000	+	0	NA	intron (NM_015299, intron 5 of 7)	intron (NM_015299, intron 5 of 7)	4946	NM_015299	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
110655	chr19	2245421	2245680	+	0	NA	exon (NM_007165, exon 5 of 9)	exon (NM_007165, exon 5 of 9)	-3773	NM_000479	268		NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
234382	chrX	15973451	15973630	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-118727	NM_001368994	8905		NM_003916	ENSG00000182287	AP1S2	DC22|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B	adaptor related protein complex 1 subunit sigma 2	protein-coding
43626	chr11	83194201	83196030	+	0	NA	intron (NM_182603, intron 1 of 9)	intron (NM_182603, intron 1 of 9)	1403	NM_001300973	338699		NM_182603	ENSG00000137494	ANKRD42	PPP1R79|SARP	ankyrin repeat domain 42	protein-coding
169108	chr3	155581721	155581980	+	0	NA	intron (NM_001349250, intron 5 of 23)	AluSp|SINE|Alu	94493	NM_001130960	23007		NM_014996	ENSG00000114805	PLCH1	HPE14|PLC eta 1|PLC-L3|PLCL3	phospholipase C eta 1	protein-coding
93765	chr17	20042871	20043730	+	0	NA	intron (NM_001243439, intron 1 of 14)	L1MC4|LINE|L1	33941	NM_001243439	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
170953	chr3	194399371	194399530	+	0	NA	promoter-TSS (NM_004488)	promoter-TSS (NM_004488)	-184	NM_004488	2814		NM_004488	ENSG00000178732	GP5	CD42d|GPV	glycoprotein V platelet	protein-coding
79688	chr16	1261221	1261680	+	0	NA	Intergenic	CpG	5381	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
180073	chr5	1100421	1101300	+	0	NA	intron (NM_006598, intron 1 of 23).2	L1MC3|LINE|L1	11203	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
20911	chr1	202173701	202174500	+	0	NA	intron (NR_002930, intron 6 of 21)	intron (NR_002930, intron 6 of 21)	6049	NR_002930	148713		NR_002930	ENSG00000293457	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase receptor type V, pseudogene	pseudo
123426	chr19	54105351	54105850	+	0	NA	intron (NM_004542, intron 2 of 3).6	intron (NM_004542, intron 2 of 3).6	2745	NM_004542	4696		NM_004542	ENSG00000170906	NDUFA3	B9|CI-B9	NADH:ubiquinone oxidoreductase subunit A3	protein-coding
132028	chr2	100907971	100908130	+	0	NA	intron (NM_002518, intron 2 of 20)	intron (NM_002518, intron 2 of 20)	69111	NR_110213	101927142		NR_110213		NPAS2-AS1	-	NPAS2 antisense RNA 1	ncRNA
195394	chr6	36765821	36766400	+	0	NA	promoter-TSS (NM_001376890)	promoter-TSS (NM_001376890)	-315	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
112909	chr19	7642701	7643000	+	0	NA	intron (NM_006949, intron 11 of 18)	intron (NM_006949, intron 11 of 18)	5740	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
126395	chr2	27582521	27583830	+	0	NA	TTS (NM_032266)	TTS (NM_032266)	133	NM_032434	84450		NM_032434	ENSG00000243943	ZNF512	-	zinc finger protein 512	protein-coding
182840	chr5	69333821	69334150	+	0	NA	Intergenic	Intergenic	-1184	NM_176816	202243		NM_176816	ENSG00000183323	CCDC125	KENAE	coiled-coil domain containing 125	protein-coding
95402	chr17	35982051	35982350	+	0	NA	promoter-TSS (NM_004590)	promoter-TSS (NM_004590)	-703	NM_004590	6360		NM_004590	ENSG00000275152	CCL16	CKb12|HCC-4|ILINCK|LCC-1|LEC|LMC|Mtn-1|NCC-4|NCC4|SCYA16|SCYL4	C-C motif chemokine ligand 16	protein-coding
224263	chr9	6023851	6024450	+	0	NA	Intergenic	Intergenic	-8526	NM_001243203	26953		NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
182375	chr5	60843721	60844430	+	0	NA	intron (NM_001297617, intron 1 of 10)	CpG	194	NM_001297617	79993		NM_024930	ENSG00000164181	ELOVL7	-	ELOVL fatty acid elongase 7	protein-coding
50299	chr12	46392871	46393030	+	0	NA	intron (NR_125381, intron 2 of 2)	intron (NR_125381, intron 2 of 2)	8843	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
178817	chr4	153528621	153529500	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	62700	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
199413	chr6	116662171	116662500	+	0	NA	intron (NM_001361191, intron 1 of 8)	intron (NM_001361191, intron 1 of 8)	6431	NM_145062	221302		NM_145062	ENSG00000153975	ZUP1	C6orf113|DUB|ZUFSP	zinc finger containing ubiquitin peptidase 1	protein-coding
229308	chr9	120868051	120871050	+	0	NA	promoter-TSS (NM_001286842)	promoter-TSS (NM_001286842)	-639	NM_001286842	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
57506	chr12	122104401	122105500	+	0	NA	intron (NM_014938, intron 1 of 16)	L1MC5a|LINE|L1	26194	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
53704	chr12	68553201	68553400	+	0	NA	Intergenic	Intergenic	-57599	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
156182	chr22	40242651	40242950	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	64875	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
112659	chr19	6868351	6868650	+	0	NA	Intergenic	Intergenic	-19079	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
74285	chr15	57705221	57705500	+	0	NA	intron (NR_104371, intron 13 of 16)	intron (NR_104371, intron 13 of 16)	-1161	NM_001018102	81488		NM_015532	ENSG00000255529	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	RNA polymerase II subunit M	protein-coding
213835	chr7	141700171	141701700	+	0	NA	intron (NM_001080392, intron 1 of 8).2	intron (NM_001080392, intron 1 of 8).2	1231	NM_001080392	57189		NM_001080392	ENSG00000257093	DENND11	KIAA1147|LCHN|PRO2561	DENN domain containing 11	protein-coding
221494	chr8	124538421	124539830	+	0	NA	promoter-TSS (NM_001278645)	promoter-TSS (NM_001278645)	2	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
171887	chr4	785301	786630	+	0	NA	3' UTR (NM_006651, exon 4 of 4)	3' UTR (NM_006651, exon 4 of 4)	-4117	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
32843	chr10	110050021	110050680	+	0	NA	intron (NM_016824, intron 1 of 14)	THE1B|LTR|ERVL-MaLR	-41969	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
66657	chr14	63883171	63883330	+	0	NA	intron (NM_015180, intron 1 of 114)	AluSz|SINE|Alu	30246	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
222567	chr8	140620421	140620700	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	15073	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
238259	chrX	148276671	148276830	+	0	NA	Intergenic	L1PA13|LINE|L1	-223867	NM_001169124	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
197684	chr6	85625221	85625730	+	0	NA	intron (NM_001253771, intron 5 of 10)	AluSg|SINE|Alu	15976	NM_001159675	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
148075	chr20	63289551	63290250	+	0	NA	TTS (NM_018209)	TTS (NM_018209)	3092	NR_036220	100422945		NR_036220	ENSG00000266104	MIR4326	mir-4326	microRNA 4326	ncRNA
108257	chr18	63233571	63234030	+	0	NA	intron (NM_000633, intron 2 of 2)	L1ME3Cz|LINE|L1	85969	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
24011	chr1	235257771	235258130	+	0	NA	intron (NM_016374, intron 3 of 23)	intron (NM_016374, intron 3 of 23)	-67834	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
77146	chr15	79920001	79920200	+	0	NA	intron (NR_037653, intron 1 of 2)	HERVIP10FH-int|LTR|ERV1	-2671	NR_028330	283687		NM_175898		ST20-AS1	C15orf37	ST20 antisense RNA 1	ncRNA
216243	chr8	12208151	12208600	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-14242	NR_148876	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
28375	chr10	47285601	47286000	+	0	NA	Intergenic	Intergenic	-14397	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
207128	chr7	42914201	42914400	+	0	NA	Intergenic	AluJb|SINE|Alu	-2210	NM_001099858	79020		NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
135176	chr2	157895621	157896080	+	0	NA	Intergenic	MIRb|SINE|MIR	-19520	NM_001111067	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
28423	chr10	48301321	48301580	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-5189	NM_001278547	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
131053	chr2	88451851	88453130	+	0	NA	exon (NM_001135649, exon 1 of 2)	exon (NM_001135649, exon 1 of 2)	203	NM_001135649	344167		NM_001135649	ENSG00000214336	FOXI3	CFM2	forkhead box I3	protein-coding
56920	chr12	120437421	120438650	+	0	NA	promoter-TSS (NM_004373)	promoter-TSS (NM_004373)	-78	NM_004373	1337		NM_004373	ENSG00000111775	COX6A1	CMTRID|COX6A|COX6AL	cytochrome c oxidase subunit 6A1	protein-coding
127086	chr2	37587721	37588380	+	0	NA	Intergenic	Intergenic	83592	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
216327	chr8	13065421	13065680	+	0	NA	Intergenic	Intergenic	50694	NM_001164271	10395		NM_006094	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
97249	chr17	42995871	42996450	+	0	NA	Intergenic	AluSx|SINE|Alu	-2113	NM_001349921	6155		NM_000988	ENSG00000131469	RPL27	DBA16|L27|eL27	ribosomal protein L27	protein-coding
208054	chr7	56063801	56064700	+	0	NA	promoter-TSS (NM_015411)	promoter-TSS (NM_015411)	-36	NM_001366648	25870		NM_015411	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
235670	chrX	48577871	48578030	+	0	NA	3' UTR (NM_006743, exon 7 of 7)	3' UTR (NM_006743, exon 7 of 7)	3466	NM_006743	5935		NM_006743	ENSG00000102317	RBM3	IS1-RNPL|RNPL	RNA binding motif protein 3	protein-coding
128500	chr2	59885571	59885930	+	0	NA	Intergenic	Intergenic	497286	NR_132991	106660609		NR_132991	ENSG00000228590	MIR4432HG	-	MIR4432 host gene	ncRNA
133300	chr2	113625271	113625650	+	0	NA	intron (NR_024530, intron 2 of 3)	intron (NR_024530, intron 2 of 3)	1678	NR_024531	118433		NR_000029		RPL23AP7	RPL23AL1|RPL23A_6_267|bA395L14.9	ribosomal protein L23a pseudogene 7	pseudo
177237	chr4	108621951	108622650	+	0	NA	intron (NM_033625, intron 3 of 5)	intron (NM_033625, intron 3 of 5)	1671	NM_001319234	6164		NM_000995	ENSG00000109475	RPL34	L34|eL34	ribosomal protein L34	protein-coding
204914	chr7	6159471	6159750	+	0	NA	intron (NM_032172, intron 17 of 17)	intron (NM_032172, intron 17 of 17)	12527	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
212002	chr7	114087371	114087900	+	0	NA	intron (NR_033766, intron 1 of 19)	CpG-26317	1308	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
36508	chr11	6411471	6411830	+	0	NA	intron (NM_145689, intron 1 of 13)	intron (NM_145689, intron 1 of 13)	-5987	NM_001257320	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
69366	chr14	94009901	94010500	+	0	NA	intron (NR_024183, intron 8 of 10).2	AluSx|SINE|Alu	12899	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
142143	chr20	2750271	2751200	+	0	NA	intron (NR_138537, intron 11 of 17)	CpG	49892	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
25406	chr10	6539851	6540050	+	0	NA	intron (NM_001323265, intron 1 of 17)	L3|LINE|CR1	40326	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
31062	chr10	88991301	88992300	+	0	NA	promoter-TSS (NM_001141945)	promoter-TSS (NM_001141945)	369	NR_135315	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
197783	chr6	87674321	87674580	+	0	NA	TTS (NM_018064)	TTS (NM_018064)	27783	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
134212	chr2	134657671	134657850	+	0	NA	intron (NM_030923, intron 2 of 7)	AluSq2|SINE|Alu	61240	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
222710	chr8	141309771	141310600	+	0	NA	Intergenic	Intergenic	-1897	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
82966	chr16	21928751	21929050	+	0	NA	Intergenic	MADE1|DNA|TcMar-Mariner	-24461	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
167563	chr3	129400671	129400830	+	0	NA	TTS (NM_207307)	TTS (NM_207307)	-1311	NR_003111	132241		NR_003111	ENSG00000290993	RPL32P3	-	ribosomal protein L32 pseudogene 3	pseudo
196467	chr6	43522971	43523650	+	0	NA	non-coding (NR_144392, exon 33 of 33)	non-coding (NR_144392, exon 33 of 33)	6221	NM_203290	9533		NM_004875	ENSG00000171453	POLR1C	AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3	RNA polymerase I and III subunit C	protein-coding
7662	chr1	35705701	35706100	+	0	NA	Intergenic	AluJo|SINE|Alu	11011	NM_001348691	127703		NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
134983	chr2	152648321	152648580	+	0	NA	3' UTR (NM_052905, exon 26 of 26)	3' UTR (NM_052905, exon 26 of 26)	69011	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
6186	chr1	27442801	27443000	+	0	NA	intron (NM_006990, intron 1 of 8)	AluSg|SINE|Alu	47267	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
113205	chr19	8449921	8450480	+	0	NA	intron (NM_031203, intron 1 of 16)	intron (NM_031203, intron 1 of 16)	5225	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
161611	chr3	43217051	43217550	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-69212	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
13352	chr1	113858751	113858850	+	0	NA	intron (NM_012411, intron 3 of 18)	AluJb|SINE|Alu	2165	NR_037864	100287722		NR_037864	ENSG00000226167	AP4B1-AS1	-	AP4B1 antisense RNA 1	ncRNA
12832	chr1	110049121	110049380	+	0	NA	intron (NR_073071, intron 17 of 21)	intron (NR_073071, intron 17 of 21)	14626	NM_033088	85369		NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
216821	chr8	22574221	22575730	+	0	NA	3' UTR (NM_001018003, exon 10 of 10)	3' UTR (NM_001018003, exon 10 of 10)	-3766	NM_021630	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
45390	chr11	118319651	118319750	+	0	NA	Intergenic	Intergenic	14970	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
235124	chrX	40734871	40736330	+	0	NA	promoter-TSS (NM_004229)	promoter-TSS (NM_004229)	-58	NM_004229	9282		NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
2234	chr1	8863851	8864150	+	0	NA	exon (NM_001201483, exon 8 of 11)	exon (NM_001201483, exon 8 of 11)	2590	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
160833	chr3	33062871	33063100	+	0	NA	intron (NM_000404, intron 5 of 15)	intron (NM_000404, intron 5 of 15)	33847	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
221006	chr8	115960371	115960530	+	0	NA	intron (NR_046215, intron 11 of 13)	intron (NR_046215, intron 11 of 13)	-291475	NM_001282903	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
149750	chr21	34603071	34603400	+	0	NA	intron (NM_004414, intron 1 of 3)	intron (NM_004414, intron 1 of 3)	10608	NM_001285389	1827		NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
194287	chr6	32664321	32665260	+	0	NA	intron (NM_001243961, intron 2 of 5)	CpG	1867	NM_001243961	3119		NM_002123	ENSG00000179344	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
46102	chr11	122871301	122871500	+	0	NA	3' UTR (NM_001304782, exon 5 of 5)	3' UTR (NM_001304782, exon 5 of 5)	9069	NM_001304782	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
4195	chr1	19441251	19441750	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	42795	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
47045	chr12	464571	465230	+	0	NA	intron (NM_173593, intron 1 of 19)	intron (NM_173593, intron 1 of 19)	4961	NM_173593	283358		NM_173593	ENSG00000139044	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein-coding
15766	chr1	151165151	151167080	+	0	NA	promoter-TSS (NM_024041)	promoter-TSS (NM_024041)	-29	NM_024041	79005		NM_024041	ENSG00000163156	SCNM1	OFD19	sodium channel modifier 1	protein-coding
124180	chr19	56144221	56144780	+	0	NA	intron (NM_018337, intron 1 of 4)	L2b|LINE|L2	3213	NM_001253792	55311		NM_018337	ENSG00000167685	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
103813	chr17	79095151	79095400	+	0	NA	intron (NM_001082575, intron 13 of 14)	intron (NM_001082575, intron 13 of 14)	20451	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
146553	chr20	49989921	49990180	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	7070	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
236873	chrX	81174451	81174550	+	0	NA	intron (NM_030763, intron 1 of 6)	L2c|LINE|L2	27413	NM_030763	79366		NM_030763	ENSG00000198157	HMGN5	NBP-45|NSBP1	high mobility group nucleosome binding domain 5	protein-coding
224686	chr9	21318251	21318580	+	0	NA	Intergenic	L1PA4|LINE|L1	-13102	NM_002169	3442		NM_002169	ENSG00000147873	IFNA5	IFN-alpha-5|IFN-alphaG|INA5|INFA5|leIF G	interferon alpha 5	protein-coding
162763	chr3	49064151	49064730	+	0	NA	intron (NM_001320580, intron 3 of 10)	AluSx1|SINE|Alu	29192	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
180346	chr5	6718001	6718580	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	4858	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
78974	chr15	101640121	101640380	+	0	NA	intron (NM_001307960, intron 4 of 4)	MLT1A0|LTR|ERVL-MaLR	12131	NM_078474	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
45365	chr11	118263921	118264830	+	0	NA	promoter-TSS (NM_005797)	promoter-TSS (NM_005797)	-78	NM_005797	10205		NM_005797	ENSG00000149573	MPZL2	DFNB111|EVA|EVA1	myelin protein zero like 2	protein-coding
214157	chr7	144517721	144517980	+	0	NA	intron (NR_146934, intron 6 of 6)	MamTip2|DNA|hAT-Tip100	-107623	NM_001080413	135935		NM_001080413	ENSG00000106410	NOBOX	OG-2|OG2|OG2X|POF5|TCAG_12042	NOBOX oogenesis homeobox	protein-coding
174733	chr4	42817451	42817780	+	0	NA	Intergenic	Intergenic	-75098	NM_001080476	389207		NM_001080476	ENSG00000215203	GRXCR1	DFNB25|PPP1R88	glutaredoxin and cysteine rich domain containing 1	protein-coding
168681	chr3	150600971	150601330	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-2171	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
159751	chr3	16264271	16265580	+	0	NA	promoter-TSS (NM_001330670)	promoter-TSS (NM_001330670)	18	NM_001047434	285381		NM_206831	ENSG00000154813	DPH3	DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2	diphthamide biosynthesis 3	protein-coding
145328	chr20	41093601	41093800	+	0	NA	intron (NM_003286, intron 9 of 20)	Charlie25|DNA|hAT-Charlie	-43843	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
173253	chr4	7027371	7027730	+	0	NA	intron (NM_020773, intron 13 of 13)	(CA)n|Simple_repeat|Simple_repeat	15451	NM_153376	257236		NM_153376	ENSG00000173013	CFAP184	CCDC96	cilia and flagella associated protein 184	protein-coding
227510	chr9	91346621	91346900	+	0	NA	intron (NM_001351432, intron 4 of 10)	MER21C|LTR|ERVL	15158	NM_001698	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
99063	chr17	48940571	48940930	+	0	NA	intron (NM_001317194, intron 3 of 9)	AluY|SINE|Alu	4092	NR_133679	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
87550	chr16	71927751	71928250	+	0	NA	3' UTR (NM_001270979, exon 6 of 6)	3' UTR (NM_001270979, exon 6 of 6)	32469	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
233884	chrX	1582871	1583730	+	0	NA	Intergenic	Intergenic	-8304	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
66912	chr14	65302851	65303250	+	0	NA	Intergenic	Intergenic	32133	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
208440	chr7	66849071	66849230	+	0	NA	intron (NR_135738, intron 2 of 6)	AluSg7|SINE|Alu	1700	NR_135738	101929580		NR_135738		GTF2IP23	-	general transcription factor IIi pseudogene 23	pseudo
192583	chr6	25959371	25959800	+	0	NA	Intergenic	Intergenic	-3217	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
178311	chr4	145369601	145369800	+	0	NA	Intergenic	L1PA2|LINE|L1	-29281	NR_147156	105377466		NR_147156	ENSG00000272727	LINC02266	-	long intergenic non-protein coding RNA 2266	ncRNA
8252	chr1	39773201	39774080	+	0	NA	intron (NM_001720, intron 3 of 6)	MLT1F1|LTR|ERVL-MaLR	-2292	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
164210	chr3	56888351	56888450	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	28036	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
6567	chr1	28740671	28741580	+	0	NA	intron (NM_016258, intron 3 of 4)	AluSz|SINE|Alu	4185	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
100750	chr17	63947751	63948330	+	0	NA	exon (NM_000334, exon 17 of 24)	exon (NM_000334, exon 17 of 24)	-15709	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
24640	chr1	246784951	246785450	+	0	NA	Intergenic	Intergenic	-4417	NR_015422	149134		NM_207326		LINC01341	-	long intergenic non-protein coding RNA 1341	ncRNA
188176	chr5	150484301	150484500	+	0	NA	intron (NR_105061, intron 2 of 2)	AluSx1|SINE|Alu	1592	NR_105061	102546298		NR_105061	ENSG00000254333	NDST1-AS1	-	NDST1 antisense RNA 1	ncRNA
223474	chr8	144048501	144049700	+	0	NA	promoter-TSS (NR_158554)	promoter-TSS (NR_158554)	-298	NR_158554	392275		NR_158554		SMPD5	MA-nSMase	sphingomyelin phosphodiesterase 5 (pseudogene)	pseudo
62193	chr13	97659671	97659830	+	0	NA	Intergenic	Intergenic	225581	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
184658	chr5	107605071	107605630	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	65587	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
44173	chr11	96235571	96235930	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-105688	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
158047	chr22	49941001	49941400	+	0	NA	Intergenic	Intergenic	-19572	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
203585	chr7	919721	919980	+	0	NA	intron (NM_006869, intron 4 of 10)	GA-rich|Low_complexity|Low_complexity	1039	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
171381	chr3	196143371	196143530	+	0	NA	intron (NR_034088, intron 1 of 2)	AluSx1|SINE|Alu	814	NR_034088	401109		NM_001001699	ENSG00000224652	LINC00885	-	long intergenic non-protein coding RNA 885	ncRNA
163302	chr3	50344671	50344830	+	0	NA	intron (NM_015896, intron 2 of 11)	intron (NM_015896, intron 2 of 11)	982	NM_015896	51364		NM_015896	ENSG00000004838	ZMYND10	BLU|CILD22|DNAAF7|FLU	zinc finger MYND-type containing 10	protein-coding
61438	chr13	51849621	51849980	+	0	NA	Intergenic	Intergenic	-4623	NM_001351006	283521		NM_178515	ENSG00000281106	TMEM272	LINC00282|NCRNA00282	transmembrane protein 272	protein-coding
227767	chr9	93114321	93114930	+	0	NA	Intergenic	Intergenic	18408	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
23079	chr1	226648721	226649180	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	26118	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
226483	chr9	71756551	71756650	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	11913	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
174634	chr4	40316921	40318200	+	0	NA	intron (NR_121640, intron 1 of 2)	intron (NR_121640, intron 1 of 2)	1076	NR_121640	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
184908	chr5	112888271	112888630	+	0	NA	intron (NM_005669, intron 3 of 4)	AluJr|SINE|Alu	27163	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
162664	chr3	48916701	48917300	+	0	NA	TTS (NR_161301)	TTS (NR_161301)	-1842	NM_001349230	10425		NM_006321	ENSG00000177479	ARIH2	ARI2|TRIAD1	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding
18480	chr1	161624721	161625250	+	0	NA	intron (NM_001271037, intron 3 of 3)	intron (NM_001271037, intron 3 of 3)	6062	NM_001271036	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
49782	chr12	31892301	31892500	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-5197	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
135092	chr2	157338151	157338250	+	0	NA	Intergenic	Intergenic	-10488	NM_001009959	57471		NM_020711	ENSG00000136541	ERMN	JN|KIAA1189	ermin	protein-coding
201965	chr6	152173521	152173930	+	0	NA	intron (NM_033071, intron 129 of 145)	intron (NM_033071, intron 129 of 145)	-5438	NM_001347702	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
232936	chr9	136908351	136908650	+	0	NA	intron (NM_021138, intron 5 of 10)	AluSx3|SINE|Alu	21767	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
151344	chr21	45639001	45639400	+	0	NA	Intergenic	Intergenic	-4525	NM_001382287	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
43448	chr11	77820201	77821730	+	0	NA	promoter-TSS (NM_001316962)	promoter-TSS (NM_001316962)	-131	NM_016578	51773		NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
96816	chr17	41933851	41934630	+	0	NA	intron (NM_031421, intron 1 of 11)	AluSz|SINE|Alu	3623	NR_110662	83538		NM_031421	ENSG00000204815	ODAD4	TTC25	outer dynein arm docking complex subunit 4	protein-coding
159939	chr3	17088751	17089300	+	0	NA	intron (NM_015184, intron 5 of 5)	intron (NM_015184, intron 5 of 5)	155829	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
119626	chr19	40790101	40790500	+	0	NA	intron (NR_037791, intron 7 of 11)	L2a|LINE|L2	-8891	NM_080732	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
147841	chr20	62791451	62792280	+	0	NA	Intergenic	Intergenic	-4608	NM_018270	55257		NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG domain binding protein	protein-coding
158229	chr22	50278701	50278900	+	0	NA	intron (NM_001376885, intron 28 of 36)	intron (NM_001376885, intron 28 of 36)	-8420	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
175272	chr4	67524301	67524930	+	0	NA	intron (NR_155754, intron 5 of 18)	L1PA8|LINE|L1	20888	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
219120	chr8	66000951	66002380	+	0	NA	Intergenic	Intergenic	-13313	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
86973	chr16	68151771	68151930	+	0	NA	intron (NM_173165, intron 3 of 9)	AluSx1|SINE|Alu	66480	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
174116	chr4	36208001	36208280	+	0	NA	intron (NR_146894, intron 6 of 32)	L2a|LINE|L2	35799	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
157840	chr22	48097101	48097300	+	0	NA	Intergenic	Intergenic	-177164	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	ncRNA
144727	chr20	36577101	36577500	+	0	NA	intron (NM_001199535, intron 1 of 4)	AluSx|SINE|Alu	2746	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
83117	chr16	22517521	22517780	+	0	NA	intron (NM_001135865, intron 1 of 6)	AluSg|SINE|Alu	4127	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
177169	chr4	108149701	108150530	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	16682	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
135149	chr2	157467651	157467950	+	0	NA	Intergenic	Intergenic	-23711	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
205147	chr7	7188971	7189130	+	0	NA	intron (NM_020156, intron 1 of 3)	intron (NM_020156, intron 1 of 3)	6506	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
157375	chr22	44712451	44712550	+	0	NA	intron (NM_181334, intron 1 of 14)	intron (NM_181334, intron 1 of 14)	10296	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
80002	chr16	1911951	1912880	+	0	NA	intron (NM_001009606, intron 1 of 1)	intron (NM_001009606, intron 1 of 1)	6000	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
184371	chr5	97297251	97297350	+	0	NA	Intergenic	L1MA3|LINE|L1	-114053	NM_001159749	55781		NM_018343	ENSG00000058729	RIOK2	RIO2	RIO kinase 2	protein-coding
22122	chr1	211738421	211739130	+	0	NA	Intergenic	Intergenic	63013	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
115478	chr19	15365221	15366600	+	0	NA	intron (NM_005858, intron 9 of 13)	AluSx1|SINE|Alu	13877	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
21526	chr1	205809801	205810000	+	0	NA	intron (NM_173854, intron 2 of 10)	intron (NM_173854, intron 2 of 10)	3298	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
223102	chr8	143434451	143435850	+	0	NA	Intergenic	Intergenic	-4418	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
110532	chr19	2081701	2082900	+	0	NA	intron (NM_130807, intron 2 of 4)	MER20|DNA|hAT-Charlie	14026	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
6865	chr1	31153571	31154030	+	0	NA	Intergenic	AluJb|SINE|Alu	86087	NM_024522	79570		NM_024522	ENSG00000084628	NKAIN1	FAM77C	sodium/potassium transporting ATPase interacting 1	protein-coding
189551	chr5	174419301	174419760	+	0	NA	intron (NR_125806, intron 1 of 5)	intron (NR_125806, intron 1 of 5)	83176	NR_125806	101928176		NR_125806	ENSG00000249306	LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
199295	chr6	111996001	111996400	+	0	NA	Intergenic	Intergenic	-57904	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
63200	chr13	113802251	113802750	+	0	NA	intron (NM_001348663, intron 7 of 7)	intron (NM_001348663, intron 7 of 7)	-13110	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
75954	chr15	70459821	70460500	+	0	NA	Intergenic	Intergenic	45768	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
49991	chr12	42226871	42227180	+	0	NA	intron (NR_135140, intron 2 of 6)	CpG	11223	NM_005748	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
99609	chr17	50548871	50549350	+	0	NA	exon (NM_001258373, exon 6 of 17)	exon (NM_001258373, exon 6 of 17)	1936	NM_022827	64847		NM_022827	ENSG00000006282	SPATA20	HEL-S-98|SSP411|Tisp78	spermatogenesis associated 20	protein-coding
74496	chr15	60074351	60074730	+	0	NA	Intergenic	Intergenic	70229	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
8984	chr1	44646501	44647130	+	0	NA	intron (NM_001319957, intron 11 of 13)	intron (NM_001319957, intron 11 of 13)	14847	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
26812	chr10	23449851	23450180	+	0	NA	Intergenic	Intergenic	10940	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
201851	chr6	150263821	150264480	+	0	NA	Intergenic	Intergenic	-104862	NM_203395	389434		NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
105997	chr18	7878721	7879000	+	0	NA	intron (NM_002845, intron 2 of 30)	intron (NM_002845, intron 2 of 30)	-68015	NM_001378146	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
235999	chrX	54441451	54441550	+	0	NA	intron (NM_001346790, intron 2 of 4)	L2c|LINE|L2	1096	NM_058163	90121		NM_058163	ENSG00000158526	TSR2	DBA14|DT1P1A10|WGG1	TSR2 ribosome maturation factor	protein-coding
172067	chr4	1028951	1029250	+	0	NA	Intergenic	Intergenic	16636	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
72229	chr15	30386421	30387000	+	0	NA	intron (NM_139320, intron 2 of 9).3	intron (NM_139320, intron 2 of 9).3	6830	NM_139320	89832		NM_139320	ENSG00000166664	CHRFAM7A	CHRNA7|CHRNA7-DR1|D-10|NACHRA7	CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion	protein-coding
84902	chr16	31210501	31210800	+	0	NA	Intergenic	AluJb|SINE|Alu	-3469	NM_001008274	493829		NM_001008274	ENSG00000177238	TRIM72	MG53	tripartite motif containing 72	protein-coding
127534	chr2	42324301	42324530	+	0	NA	intron (NM_019063, intron 19 of 22)	AluJb|SINE|Alu	35623	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
164037	chr3	53273251	53273550	+	0	NA	Intergenic	Intergenic	-17286	NM_001258028	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
88015	chr16	81006351	81008550	+	0	NA	promoter-TSS (NR_147840)	promoter-TSS (NR_147840)	-565	NR_147842	56942		NM_020188	ENSG00000103121	CMC2	2310061C15Rik|C16orf61|DC13	C-X9-C motif containing 2	protein-coding
91522	chr17	4970821	4971150	+	0	NA	promoter-TSS (NR_106925)	promoter-TSS (NR_106925)	-835	NR_106925	102465522		NR_106925	ENSG00000278517	MIR6865	hsa-mir-6865	microRNA 6865	ncRNA
78627	chr15	94239501	94239950	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	8164	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
92126	chr17	7616771	7617480	+	0	NA	intron (NM_001289114, intron 1 of 7)	intron (NM_001289114, intron 1 of 7)	-2228	NM_004860	9513		NM_004860	ENSG00000129245	FXR2	FMR1L2|FXR2P	FMR1 autosomal homolog 2	protein-coding
81346	chr16	4797071	4798050	+	0	NA	intron (NR_046480, intron 9 of 9)	intron (NR_046480, intron 9 of 9)	2191	NM_001253794	440335		NM_001253790	ENSG00000267795	SMIM22	CASIMO1	small integral membrane protein 22	protein-coding
32419	chr10	102475521	102475980	+	0	NA	exon (NM_024789, exon 10 of 10)	exon (NM_024789, exon 10 of 10)	14355	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
42487	chr11	69970051	69970150	+	0	NA	Intergenic	Intergenic	-15807	NM_001378092	55107		NM_018043	ENSG00000131620	ANO1	DOG1|INDMS|MYMY7|ORAOV2|TAOS2|TMEM16A	anoctamin 1	protein-coding
84371	chr16	30244451	30244950	+	0	NA	intron (NM_001321892, intron 3 of 8)	intron (NM_001321892, intron 3 of 8)	1155	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
64610	chr14	30625601	30626200	+	0	NA	intron (NM_001257376, intron 1 of 22)	intron (NM_001257376, intron 1 of 22)	3581	NM_001257376	23256		NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
63860	chr14	21643471	21643630	+	0	NA	Intergenic	Intergenic	-8610	NM_001005466	26534		NM_001005466	ENSG00000255582	OR10G2	OR14-41	olfactory receptor family 10 subfamily G member 2	protein-coding
198360	chr6	105400571	105400930	+	0	NA	intron (NM_002726, intron 1 of 14)	intron (NM_002726, intron 1 of 14)	2332	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
184244	chr5	96665671	96665830	+	0	NA	intron (NM_001375317, intron 1 of 30)	(AC)n|Simple_repeat|Simple_repeat	2725	NM_001330629	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
141270	chr2	239991771	239992200	+	0	NA	intron (NM_004544, intron 8 of 9)	intron (NM_004544, intron 8 of 9)	33357	NR_136158	4705		NM_004544	ENSG00000130414	NDUFA10	CI-42KD|CI-42k|MC1DN22	NADH:ubiquinone oxidoreductase subunit A10	protein-coding
82792	chr16	21460221	21460980	+	0	NA	intron (NR_027155, intron 13 of 28)	AluSz6|SINE|Alu	-26145	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
30998	chr10	88270771	88271850	+	0	NA	Intergenic	Intergenic	312008	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
206841	chr7	37352821	37354100	+	0	NA	5' UTR (NM_001206482, exon 1 of 22)	5' UTR (NM_001206482, exon 1 of 22)	208	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
192231	chr6	18504001	18504230	+	0	NA	Intergenic	Intergenic	-18632	NR_149116	105374956		NR_149116		MIR548A1HG	-	MIR548A1 host gene	ncRNA
103286	chr17	77834101	77835000	+	0	NA	Intergenic	Intergenic	49537	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
218420	chr8	47613651	47613950	+	0	NA	intron (NM_001352944, intron 7 of 13)	L1MB5|LINE|L1	-40288	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
28929	chr10	63192151	63192830	+	0	NA	intron (NM_001322258, intron 15 of 24)	AluSq2|SINE|Alu	59162	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
63895	chr14	21861071	21861700	+	0	NA	Intergenic	Intergenic	-190368	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
63401	chr13	114073901	114074430	+	0	NA	intron (NM_001320821, intron 1 of 25).2	L1MB3|LINE|L1	3790	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
178667	chr4	152500601	152501730	+	0	NA	intron (NM_001349798, intron 2 of 13)	MER103C|DNA|hAT-Charlie	-11749	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
96946	chr17	42183721	42186350	+	0	NA	intron (NM_001524, intron 1 of 1)	MIR|SINE|MIR	417	NM_001524	3060		NM_001524	ENSG00000161610	HCRT	NRCLP1|OX|PPOX	hypocretin neuropeptide precursor	protein-coding
151271	chr21	45438051	45438380	+	0	NA	intron (NM_001379500, intron 2 of 41)	intron (NM_001379500, intron 2 of 41)	-13145	NR_027498	378832		NM_199175	ENSG00000183535	COL18A1-AS1	C21orf123|NCRNA00175|PRED80	COL18A1 antisense RNA 1	ncRNA
42764	chr11	72739851	72740580	+	0	NA	intron (NM_001040118, intron 1 of 34)	MER91A|DNA|hAT-Tip100	12174	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
173748	chr4	16217221	16217550	+	0	NA	intron (NM_153365, intron 1 of 13)	intron (NM_153365, intron 1 of 13)	9086	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
145757	chr20	45293101	45294250	+	0	NA	3' UTR (NM_003833, exon 11 of 11)	3' UTR (NM_003833, exon 11 of 11)	-13165	NM_014276	11317		NM_014276	ENSG00000124232	RBPJL	RBPL|RBPSUHL|SUHL	recombination signal binding protein for immunoglobulin kappa J region like	protein-coding
196929	chr6	52403651	52403950	+	0	NA	exon (NM_133367, exon 2 of 2)	exon (NM_133367, exon 2 of 2)	-16542	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
60258	chr13	40595751	40595850	+	0	NA	intron (NM_002015, intron 1 of 2)	L1MA6|LINE|L1	70841	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
172106	chr4	1082321	1082580	+	0	NA	intron (NM_001131034, intron 5 of 9)	intron (NM_001131034, intron 5 of 9)	31114	NR_159498	285498		NM_194439	ENSG00000178222	RNF212	SPGF62|ZHP3	ring finger protein 212	protein-coding
156354	chr22	40922651	40923380	+	0	NA	intron (NM_022098, intron 8 of 9)	intron (NM_022098, intron 8 of 9)	-28363	NM_014248	9978		NM_014248	ENSG00000100387	RBX1	BA554C12.1|RNF75|ROC1	ring-box 1	protein-coding
25880	chr10	11259071	11259630	+	0	NA	intron (NM_001326346, intron 4 of 11)	intron (NM_001326346, intron 4 of 11)	85324	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
215292	chr7	157276501	157277480	+	0	NA	Intergenic	Intergenic	-60014	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
6231	chr1	27522101	27523630	+	0	NA	Intergenic	Intergenic	-32698	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
82981	chr16	21959071	21959430	+	0	NA	intron (NM_003366, intron 4 of 13)	Tigger1|DNA|TcMar-Tigger	5889	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
34098	chr10	125792401	125793000	+	0	NA	intron (NR_136676, intron 9 of 10)	intron (NR_136676, intron 9 of 10)	-16879	NM_147191	118856		NM_147191	ENSG00000154485	MMP21	HTX7|MMP-21	matrix metallopeptidase 21	protein-coding
144671	chr20	36273471	36273730	+	0	NA	Intergenic	Intergenic	-32739	NM_014902	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
161367	chr3	40483201	40483750	+	0	NA	intron (NM_001145093, intron 4 of 4)	AluSg|SINE|Alu	6353	NM_001363277	285267		NM_173656	ENSG00000177873	ZNF619	-	zinc finger protein 619	protein-coding
154670	chr22	36357021	36358380	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	30267	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
4454	chr1	21333901	21335650	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	10729	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
73024	chr15	40771801	40772000	+	0	NA	3' UTR (NM_001130448, exon 1 of 1)	3' UTR (NM_001130448, exon 1 of 1)	1920	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
121809	chr19	47925571	47925930	+	0	NA	Intergenic	AluYa5|SINE|Alu	1971	NR_024227	100169957		NR_024227		SNAR-A6	-	small NF90 (ILF3) associated RNA A6	snRNA
13506	chr1	114742371	114742730	+	0	NA	intron (NM_001242891, intron 2 of 20)	AluSg|SINE|Alu	15434	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
8991	chr1	44652021	44652350	+	0	NA	TTS (NM_001319956)	TTS (NM_001319956)	18871	NR_145816	109623472		NR_145816		SNORD145	-	small nucleolar RNA, C/D box 145	snoRNA
17704	chr1	158336551	158336650	+	0	NA	Intergenic	L1PA4|LINE|L1	-5069	NM_001764	910		NM_001764	ENSG00000158485	CD1B	CD1|CD1A|R1	CD1b molecule	protein-coding
811	chr1	1558101	1558900	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	16363	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
26942	chr10	26495321	26495580	+	0	NA	intron (NM_019043, intron 3 of 14)	intron (NM_019043, intron 3 of 14)	57109	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
91425	chr17	4720951	4721200	+	0	NA	non-coding (NR_047516, exon 14 of 14)	non-coding (NR_047516, exon 14 of 14)	-10353	NM_001305000	400569		NM_001001683	ENSG00000161920	MED11	HSPC296|NDDRSB	mediator complex subunit 11	protein-coding
69381	chr14	94033601	94033800	+	0	NA	intron (NM_023112, intron 1 of 5)	intron (NM_023112, intron 1 of 5)	7360	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
89497	chr16	89148071	89148230	+	0	NA	intron (NR_147928, intron 11 of 11)	AluSz|SINE|Alu	-11070	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
83777	chr16	28739171	28740230	+	0	NA	Intergenic	Intergenic	-12735	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
91373	chr17	4553851	4553950	+	0	NA	exon (NM_001105538, exon 5 of 27)	exon (NM_001105538, exon 5 of 27)	1484	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
220630	chr8	100940871	100941450	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	9411	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
99751	chr17	50947751	50948830	+	0	NA	Intergenic	Intergenic	-80312	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
213506	chr7	139063671	139064080	+	0	NA	intron (NM_020119, intron 8 of 12)	intron (NM_020119, intron 8 of 12)	-19718	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
120136	chr19	42208771	42209080	+	0	NA	intron (NR_073046, intron 3 of 4)	MIR|SINE|MIR	8752	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
171769	chr4	50771	50930	+	0	NA	Intergenic	LTR70|LTR|ERV1	-2435	NM_001286054	152687		NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding
100578	chr17	63196851	63197380	+	0	NA	intron (NM_025185, intron 5 of 25)	intron (NM_025185, intron 5 of 25)	230880	NM_025185	26115		NM_015623	ENSG00000170921	TANC2	IDDALDS|ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
66842	chr14	64925201	64925600	+	0	NA	intron (NM_001202558, intron 2 of 12)	AluJb|SINE|Alu	10945	NM_001202558	100529261		NM_001202558	ENSG00000125954	CHURC1-FNTB	FNTB|FTase-beta	CHURC1-FNTB readthrough	protein-coding
209140	chr7	75097171	75097330	+	0	NA	intron (NM_001368302, intron 1 of 15)	FLAM_C|SINE|Alu	3218	NM_001368302	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
230762	chr9	128904121	128904800	+	0	NA	intron (NM_019594, intron 2 of 3)	AluSx|SINE|Alu	-16522	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
105432	chr17	82888721	82888980	+	0	NA	intron (NM_005993, intron 15 of 38)	intron (NM_005993, intron 15 of 38)	-48828	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
213887	chr7	142440921	142441280	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-33427	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
226090	chr9	62805071	62805230	+	0	NA	intron (NR_121647, intron 2 of 4)	L1PREC2|LINE|L1	3685	NR_121647	103352539		NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
110911	chr19	2767951	2768400	+	0	NA	intron (NM_003021, intron 2 of 11)	intron (NM_003021, intron 2 of 11)	15098	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
150991	chr21	44350101	44350900	+	0	NA	Intergenic	CpG	-3101	NM_001320351	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
44713	chr11	111601471	111603190	+	0	NA	promoter-TSS (NM_015191)	promoter-TSS (NM_015191)	-119	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
109646	chr19	1003171	1003700	+	0	NA	exon (NM_138690, exon 2 of 9)	exon (NM_138690, exon 2 of 9)	3016	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
47232	chr12	961821	962080	+	0	NA	intron (NM_001297419, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	-12228	NR_123713	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
18281	chr1	161121571	161122400	+	0	NA	TTS (NM_001185094)	TTS (NM_001185094)	3867	NM_001185094	4817		NM_005600	ENSG00000158793	NIT1	-	nitrilase 1	protein-coding
207553	chr7	44849671	44849930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1674	NM_138635	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
152647	chr22	21540371	21540930	+	0	NA	Intergenic	Intergenic	-8797	NM_001256355	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
182918	chr5	70527651	70527950	+	0	NA	intron (NR_033968, intron 1 of 3).4	THE1B-int|LTR|ERVL-MaLR	-26897	NR_033968	100049076		NR_033968		GUSBP17	GUSBP9	GUSB pseudogene 17	pseudo
171835	chr4	686001	686730	+	0	NA	intron (NM_032219, intron 2 of 9)	CpG	2786	NM_001378060	84179		NM_032219	ENSG00000169026	SLC49A3	LP2561|MFSD7	solute carrier family 49 member 3	protein-coding
234154	chrX	10189671	10189900	+	0	NA	intron (NM_001830, intron 4 of 12)	intron (NM_001830, intron 4 of 12)	32810	NM_001830	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
3604	chr1	16243971	16244880	+	0	NA	Intergenic	Intergenic	-7242	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
225945	chr9	40998921	40999350	+	0	NA	intron (NR_156730, intron 2 of 6)	intron (NR_156730, intron 2 of 6)	6874	NR_034006	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
54755	chr12	94007771	94008150	+	0	NA	Intergenic	L1PA7|LINE|L1	-64354	NR_135017	105369911		NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
47454	chr12	3766451	3766550	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-13391	NM_001144958	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
46598	chr11	128527971	128528550	+	0	NA	intron (NR_120581, intron 2 of 3)	intron (NR_120581, intron 2 of 3)	2118	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
232832	chr9	136741171	136741330	+	0	NA	intron (NM_001368089, intron 2 of 4)	intron (NM_001368089, intron 2 of 4)	1690	NR_160514	414332		NM_001001712	ENSG00000187922	LCN10	-	lipocalin 10	protein-coding
9179	chr1	45596151	45596330	+	0	NA	intron (NM_001195193, intron 2 of 12)	L1MB2|LINE|L1	12199	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
120614	chr19	45035151	45035880	+	0	NA	intron (NM_006509, intron 10 of 10)	AluSz|SINE|Alu	-3530	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
65980	chr14	57112271	57112650	+	0	NA	Intergenic	L1PA2|LINE|L1	156445	NM_006544	10640		NM_006544	ENSG00000070367	EXOC5	HSEC10|PRO1912|SEC10|SEC10L1|SEC10P	exocyst complex component 5	protein-coding
215127	chr7	155373371	155373600	+	0	NA	Intergenic	CpG	-5552	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
168064	chr3	137131171	137131330	+	0	NA	Intergenic	Intergenic	173267	NM_144717	53833		NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
136376	chr2	176108501	176109030	+	0	NA	intron (NM_021192, intron 1 of 1)	CpG	1485	NM_021192	3237		NM_021192	ENSG00000128713	HOXD11	HOX4|HOX4F	homeobox D11	protein-coding
237446	chrX	119687151	119687450	+	0	NA	intron (NM_145799, intron 1 of 10)	AluY|SINE|Alu	5868	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
140990	chr2	238058271	238058850	+	0	NA	intron (NR_037904, intron 8 of 18)	intron (NR_037904, intron 8 of 18)	-2441	NM_016510	51540		NM_016510	ENSG00000132330	SCLY	SCL|hSCL	selenocysteine lyase	protein-coding
144358	chr20	35057021	35057280	+	0	NA	intron (NM_199368, intron 4 of 18)	HAL1b|LINE|L1	35657	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
123850	chr19	55241701	55242280	+	0	NA	intron (NM_014931, intron 7 of 23)	intron (NM_014931, intron 7 of 23)	-2014	NR_106860	102465481		NR_106860	ENSG00000278328	MIR6802	hsa-mir-6802	microRNA 6802	ncRNA
81004	chr16	4113971	4114330	+	0	NA	exon (NM_001116, exon 2 of 11)	exon (NM_001116, exon 2 of 11)	2292	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
221167	chr8	120008721	120009150	+	0	NA	intron (NM_001283012, intron 5 of 6)	intron (NM_001283012, intron 5 of 6)	-116167	NM_001384947	7373		NM_021110	ENSG00000187955	COL14A1	UND	collagen type XIV alpha 1 chain	protein-coding
162200	chr3	47007771	47008430	+	0	NA	exon (NM_015175, exon 50 of 54)	exon (NM_015175, exon 50 of 54)	-3442	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
203316	chr6	170153201	170153400	+	0	NA	Intergenic	Intergenic	-7342	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
185628	chr5	131516771	131516930	+	0	NA	intron (NM_016340, intron 7 of 27)	intron (NM_016340, intron 7 of 27)	118379	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
149578	chr21	33244051	33244980	+	0	NA	intron (NM_001385055, intron 3 of 9)	intron (NM_001385055, intron 3 of 9)	14577	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
190016	chr5	177490121	177490700	+	0	NA	3' UTR (NM_213636, exon 8 of 8)	3' UTR (NM_213636, exon 8 of 8)	7194	NR_103804	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
68829	chr14	91273571	91274130	+	0	NA	intron (NM_001080414, intron 29 of 29)	intron (NM_001080414, intron 29 of 29)	-19970	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
140646	chr2	233565621	233567150	+	0	NA	5' UTR (NM_001382298, exon 1 of 30)	5' UTR (NM_001382298, exon 1 of 30)	397	NM_018218	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
23995	chr1	235236601	235237000	+	0	NA	intron (NM_016374, intron 8 of 23)	AluSx1|SINE|Alu	-46684	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
155382	chr22	38311001	38311530	+	0	NA	intron (NM_152221, intron 2 of 10)	MIRb|SINE|MIR	6168	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
141543	chr2	241319621	241319880	+	0	NA	intron (NM_001282973, intron 4 of 16)	AluJb|SINE|Alu	3585	NM_001321033	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
59169	chr13	21673121	21674700	+	0	NA	intron (NM_002010, intron 1 of 2)	CpG	2837	NM_002010	2254		NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
10740	chr1	76267321	76268200	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	193014	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
86600	chr16	67288351	67288880	+	0	NA	TTS (NM_001100915)	TTS (NM_001100915)	9083	NM_001129729	25894		NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
233005	chr9	137008851	137009600	+	0	NA	intron (NM_212533, intron 45 of 48)	intron (NM_212533, intron 45 of 48)	-12657	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
79332	chr16	576271	576530	+	0	NA	intron (NM_004204, intron 4 of 10)	intron (NM_004204, intron 4 of 10)	6432	NM_004204	9091		NM_004204	ENSG00000007541	PIGQ	DEE77|EIEE77|GPI1|GPIBD19|MCAHS4|c407A10.1	phosphatidylinositol glycan anchor biosynthesis class Q	protein-coding
162081	chr3	46883221	46883900	+	0	NA	exon (NM_000316, exon 3 of 16)	exon (NM_000316, exon 3 of 16)	1311	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
189476	chr5	173081621	173082130	+	0	NA	intron (NM_153607, intron 2 of 8)	AluSg|SINE|Alu	25523	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
22274	chr1	212703701	212704880	+	0	NA	Intergenic	L2a|LINE|L2	-4450	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
125195	chr2	10163351	10163450	+	0	NA	intron (NR_164157, intron 11 of 12)	intron (NR_164157, intron 11 of 12)	29271	NR_036222	100422929		NR_036222	ENSG00000265418	MIR4261	-	microRNA 4261	ncRNA
23960	chr1	235156101	235156500	+	0	NA	intron (NR_144491, intron 2 of 9)	AluJb|SINE|Alu	4950	NR_027762	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
90524	chr17	1475121	1475530	+	0	NA	intron (NM_001080779, intron 14 of 31)	AluSg4|SINE|Alu	10076	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
196194	chr6	42740201	42740430	+	0	NA	Intergenic	AluY|SINE|Alu	5788	NM_003192	6903		NM_003192	ENSG00000124659	TBCC	CFC	tubulin folding cofactor C	protein-coding
109990	chr19	1416571	1417330	+	0	NA	intron (NM_170711, intron 1 of 12)	intron (NM_170711, intron 1 of 12)	9364	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
120713	chr19	45250571	45252750	+	0	NA	intron (NM_001199867, intron 1 of 16)	CpG	389	NM_031417	57787		NM_031417	ENSG00000007047	MARK4	MARK4L|MARK4S|MARKL1|MARKL1L|PAR-1D	microtubule affinity regulating kinase 4	protein-coding
58984	chr13	19958101	19959700	+	0	NA	promoter-TSS (NM_001353162)	intron (NM_001190964, intron 1 of 25)	-124	NM_001353162	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
157692	chr22	46357651	46358150	+	0	NA	TTS (NM_001282784)	TTS (NM_001282784)	22186	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
177285	chr4	109563001	109563750	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	3129	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
117612	chr19	22927301	22927700	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	75676	NM_001267716	388523		NM_001267716	ENSG00000269067	ZNF728	-	zinc finger protein 728	protein-coding
52140	chr12	54215971	54216450	+	0	NA	Intergenic	Intergenic	15266	NR_039851	100616400		NR_039851	ENSG00000283803	MIR3198-2	mir-3198-2	microRNA 3198-2	ncRNA
132202	chr2	102004621	102005050	+	0	NA	intron (NR_048564, intron 1 of 8)	intron (NR_048564, intron 1 of 8)	5874	NR_048564	7850		NM_004633	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor type 2	protein-coding
224700	chr9	21381571	21382280	+	0	NA	Intergenic	Intergenic	3473	NM_000605	3440		NM_000605	ENSG00000188379	IFNA2	IFN-alpha-2|IFN-alphaA|IFNA|IFNA2B|leIF A	interferon alpha 2	protein-coding
211253	chr7	102669671	102669830	+	0	NA	intron (NM_032959, intron 1 of 8)	intron (NM_032959, intron 1 of 8)	1985	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
32913	chr10	110207271	110208700	+	0	NA	exon (NM_130439, exon 1 of 6)	exon (NM_130439, exon 1 of 6)	380	NM_130439	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
95505	chr17	36441101	36441500	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-1779	NM_032258	84218		NM_032258	ENSG00000275954	TBC1D3F	TBC1D3|TBC1D3G	TBC1 domain family member 3F	protein-coding
8766	chr1	42737121	42737750	+	0	NA	intron (NM_001185117, intron 2 of 2)	intron (NM_001185117, intron 2 of 2)	2801	NM_148960	149461		NM_148960	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
136043	chr2	172495621	172497180	+	0	NA	intron (NM_001316306, intron 23 of 25)	intron (NM_001316306, intron 23 of 25)	-30378	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
34328	chr10	132167421	132167880	+	0	NA	intron (NM_001323090, intron 22 of 23)	intron (NM_001323090, intron 22 of 23)	-19298	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
218602	chr8	55991771	55992400	+	0	NA	intron (NM_002350, intron 10 of 12)	intron (NM_002350, intron 10 of 12)	81816	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
20148	chr1	192584451	192584750	+	0	NA	Intergenic	L2c|LINE|L2	8827	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
202654	chr6	158775751	158776150	+	0	NA	intron (NM_003379, intron 7 of 12)	intron (NM_003379, intron 7 of 12)	-11197	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
201728	chr6	149791551	149792400	+	0	NA	intron (NM_001360452, intron 4 of 7)	intron (NM_001360452, intron 4 of 7)	42234	NM_001360456	5110		NM_005389	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
492	chr1	1174721	1174980	+	0	NA	intron (NM_001371649, intron 3 of 15)	AluSx1|SINE|Alu	970	NM_001371649	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
169097	chr3	154327351	154327650	+	0	NA	Intergenic	AluJr|SINE|Alu	-3003	NM_001114397	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
198113	chr6	90320051	90320400	+	0	NA	Intergenic	Intergenic	7483	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
197061	chr6	53646971	53647850	+	0	NA	TTS (NM_001003760)	TTS (NM_001003760)	18346	NM_001003760	401265		NM_001003760	ENSG00000124743	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch like family member 31	protein-coding
59367	chr13	24683621	24684300	+	0	NA	intron (NM_001185085, intron 2 of 22)	intron (NM_001185085, intron 2 of 22)	3549	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
149986	chr21	36747551	36747930	+	0	NA	TTS (NM_001352517)	TTS (NM_001352517)	48625	NM_009586	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
193755	chr6	31307871	31308950	+	0	NA	Intergenic	Intergenic	-6773	NR_149115	105375015		NR_149115	ENSG00000256166	LINC02571	-	long intergenic non-protein coding RNA 2571	ncRNA
73394	chr15	42604951	42605580	+	0	NA	intron (NM_020759, intron 3 of 32)	intron (NM_020759, intron 3 of 32)	29659	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
6120	chr1	27347301	27347700	+	0	NA	exon (NM_001193308, exon 3 of 15)	exon (NM_001193308, exon 3 of 15)	5478	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
22754	chr1	224380071	224381030	+	0	NA	Intergenic	Intergenic	17761	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
191183	chr6	5174001	5175630	+	0	NA	intron (NM_001164841, intron 2 of 3)	intron (NM_001164841, intron 2 of 3)	-26493	NR_037462	100500900		NR_037462	ENSG00000265083	MIR3691	mir-3691	microRNA 3691	ncRNA
37658	chr11	22730371	22730530	+	0	NA	intron (NM_001351224, intron 4 of 8)	intron (NM_001351224, intron 4 of 8)	55676	NM_005256	2620		NM_005256	ENSG00000148935	GAS2	GAS-2	growth arrest specific 2	protein-coding
202904	chr6	160015471	160015630	+	0	NA	intron (NM_000876, intron 4 of 47)	intron (NM_000876, intron 4 of 47)	-7886	NR_047514	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
214012	chr7	143252001	143252380	+	0	NA	intron (NM_001363538, intron 8 of 11)	MSTA|LTR|ERVL-MaLR	-11239	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
194235	chr6	32436421	32436680	+	0	NA	Intergenic	Intergenic	-3337	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
218952	chr8	61004001	61004760	+	0	NA	Intergenic	Intergenic	-36632	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
20841	chr1	201709421	201709800	+	0	NA	intron (NR_046696, intron 2 of 2)	intron (NR_046696, intron 2 of 2)	-9898	NR_049823	100847050		NR_049823	ENSG00000264802	MIR5191	-	microRNA 5191	ncRNA
138628	chr2	210170001	210171000	+	0	NA	intron (NM_001307976, intron 1 of 13)	intron (NM_001307976, intron 1 of 13)	909	NM_001307976	151050		NM_152519	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1 like	protein-coding
202753	chr6	159038071	159038650	+	0	NA	TTS (NM_138810)	TTS (NM_138810)	3993	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
131425	chr2	96287971	96288130	+	0	NA	intron (NM_014014, intron 24 of 44)	intron (NM_014014, intron 24 of 44)	17496	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
146128	chr20	48629721	48629980	+	0	NA	intron (NM_020820, intron 36 of 39)	intron (NM_020820, intron 36 of 39)	198149	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
56656	chr12	119669921	119670600	+	0	NA	intron (NM_006253, intron 1 of 6)	intron (NM_006253, intron 1 of 6)	2127	NM_006253	5564		NM_006253	ENSG00000111725	PRKAB1	AMPK|HAMPKb	protein kinase AMP-activated non-catalytic subunit beta 1	protein-coding
63529	chr13	114341161	114341630	+	0	NA	Intergenic	Intergenic	-7447	NR_126391	104355150		NR_126391		LINC01054	-	long intergenic non-protein coding RNA 1054	ncRNA
59678	chr13	29065121	29065380	+	0	NA	intron (NM_001366651, intron 4 of 14)	L1PREC2|LINE|L1	244911	NM_001366651	23281		NM_015233	ENSG00000132938	MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated scaffold protein 2	protein-coding
16424	chr1	154549021	154549280	+	0	NA	3' UTR (NM_017582, exon 13 of 13)	3' UTR (NM_017582, exon 13 of 13)	-4459	NR_046668	100874097		NR_046668	ENSG00000229780	UBE2Q1-AS1	-	UBE2Q1 antisense RNA 1	ncRNA
25133	chr10	4081701	4081900	+	0	NA	intron (NR_120632, intron 1 of 3)	intron (NR_120632, intron 1 of 3)	30074	NR_120632								
86479	chr16	66977321	66978230	+	0	NA	Intergenic	Intergenic	10300	NM_001185176	23491		NM_012122	ENSG00000172828	CES3	ES31	carboxylesterase 3	protein-coding
773	chr1	1521771	1521930	+	0	NA	intron (NM_018188, intron 7 of 15)	AluSz|SINE|Alu	9320	NM_001170536	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
213381	chr7	135964321	135964580	+	0	NA	intron (NM_001128619, intron 1 of 3)	intron (NM_001128619, intron 1 of 3)	12909	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
212228	chr7	120989751	120990000	+	0	NA	intron (NM_001105533, intron 1 of 17)	intron (NM_001105533, intron 1 of 17)	484	NM_001105533	79974		NM_024913	ENSG00000106034	CPED1	C7orf58	cadherin like and PC-esterase domain containing 1	protein-coding
67507	chr14	70955801	70956280	+	0	NA	intron (NM_014982, intron 2 of 35)	MER20|DNA|hAT-Charlie	48581	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
118059	chr19	34277121	34277380	+	0	NA	intron (NM_014686, intron 1 of 13)	L2c|LINE|L2	22696	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
154999	chr22	37314651	37315530	+	0	NA	3' UTR (NM_013385, exon 13 of 13)	3' UTR (NM_013385, exon 13 of 13)	32582	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
114919	chr19	13957321	13957580	+	0	NA	intron (NM_138353, intron 6 of 12)	intron (NM_138353, intron 6 of 12)	-4058	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
236324	chrX	68912241	68912350	+	0	NA	Intergenic	(CAGGC)n|Simple_repeat|Simple_repeat	83274	NM_004429	1947		NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
36192	chr11	3378471	3379650	+	0	NA	promoter-TSS (NM_001130519)	promoter-TSS (NM_001130519)	86	NM_007152	7748		NM_007152	ENSG00000005801	ZNF195	HRF1|ZNFP104	zinc finger protein 195	protein-coding
117966	chr19	33300451	33300750	+	0	NA	3' UTR (NM_004364, exon 1 of 1)	3' UTR (NM_004364, exon 1 of 1)	1934	NM_004364	1050		NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	CCAAT enhancer binding protein alpha	protein-coding
100986	chr17	64608421	64608880	+	0	NA	intron (NM_022739, intron 1 of 18)	intron (NM_022739, intron 1 of 18)	53657	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
72500	chr15	33086521	33086830	+	0	NA	intron (NM_001277313, intron 5 of 20)	intron (NM_001277313, intron 5 of 20)	-18501	NM_001103184	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
35300	chr11	1016671	1017350	+	0	NA	exon (NM_005961, exon 31 of 33)	exon (NM_005961, exon 31 of 33)	19708	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
142675	chr20	6007271	6007750	+	0	NA	intron (NM_001323561, intron 1 of 6)	intron (NM_001323561, intron 1 of 6)	261	NM_001127458	54675		NM_019095	ENSG00000088766	CRLS1	C20orf155|CLS|CLS1|COSPD57|GCD10|dJ967N21.6	cardiolipin synthase 1	protein-coding
87089	chr16	68470121	68471280	+	0	NA	Intergenic	Intergenic	-22192	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
203537	chr7	869651	870350	+	0	NA	intron (NM_001367647, intron 19 of 19)	AluSx|SINE|Alu	-6554	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
128339	chr2	54722851	54724140	+	0	NA	Intergenic	CpG	-1517	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
54275	chr12	89040071	89040900	+	0	NA	Intergenic	Intergenic	-20793	NR_038385	728084		NR_038385	ENSG00000246363	LINC02458	-	long intergenic non-protein coding RNA 2458	ncRNA
133539	chr2	120261471	120261630	+	0	NA	intron (NM_002881, intron 1 of 4)	L2|LINE|L2	8698	NM_001369400	5899		NM_002881	ENSG00000144118	RALB	-	RAS like proto-oncogene B	protein-coding
29237	chr10	69092991	69094130	+	0	NA	intron (NM_001321054, intron 1 of 1)	intron (NM_001321054, intron 1 of 1)	5457	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
76859	chr15	77905801	77906000	+	0	NA	Intergenic	Intergenic	20946	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
68560	chr14	89386051	89386530	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	30943	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
179694	chr4	190111171	190111780	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	46246	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
178305	chr4	145178701	145180000	+	0	NA	intron (NM_001366057, intron 1 of 20)	intron (NM_001366057, intron 1 of 20)	330	NM_001102653	54726		NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
38047	chr11	35161621	35162280	+	0	NA	promoter-TSS (NR_145794)	promoter-TSS (NR_145794)	-1000	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
198736	chr6	108519051	108519230	+	0	NA	intron (NR_136553, intron 7 of 8)	MLT1A1|LTR|ERVL-MaLR	-40685	NM_201559	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
61076	chr13	48319001	48319480	+	0	NA	intron (NM_000321, intron 2 of 26)	CpG	15489	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
189449	chr5	172997801	172998000	+	0	NA	intron (NM_003945, intron 2 of 3)	AluJb|SINE|Alu	14129	NM_003945	8992		NM_003945	ENSG00000113732	ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase H+ transporting V0 subunit e1	protein-coding
64041	chr14	22531251	22532180	+	0	NA	Intergenic	Intergenic	25347	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
60778	chr13	45257571	45258130	+	0	NA	intron (NM_004128, intron 6 of 7)	Charlie7|DNA|hAT-Charlie	-56805	NM_198404	386618		NM_198404	ENSG00000180332	KCTD4	bA321C24.3	potassium channel tetramerization domain containing 4	protein-coding
68595	chr14	89511451	89511850	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	-64566	NR_024620	29018		NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
227889	chr9	93952871	93953430	+	0	NA	exon (NM_021570, exon 2 of 4)	exon (NM_021570, exon 2 of 4)	2205	NM_021570	56033		NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
117998	chr19	33806421	33806680	+	0	NA	intron (NM_024076, intron 4 of 6)	intron (NM_024076, intron 4 of 6)	9680	NM_001129994	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
157918	chr22	49777521	49777980	+	0	NA	exon (NM_001349942, exon 9 of 13)	exon (NM_001349942, exon 9 of 13)	46581	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
187647	chr5	143030301	143030950	+	0	NA	intron (NR_146198, intron 12 of 22)	intron (NR_146198, intron 12 of 22)	-161715	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
15781	chr1	151194571	151194730	+	0	NA	Intergenic	AluJo|SINE|Alu	-3902	NM_001135638	8394		NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein-coding
11789	chr1	92504521	92504980	+	0	NA	Intergenic	Intergenic	-17825	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
39372	chr11	59728701	59729170	+	0	NA	Intergenic	Intergenic	-15090	NM_001005324	390201		NM_001005324	ENSG00000172289	OR10V1	OR11-256	olfactory receptor family 10 subfamily V member 1	protein-coding
128033	chr2	47345251	47345550	+	0	NA	promoter-TSS (NR_110208)	promoter-TSS (NR_110208)	-326	NR_110207	101927043		NR_110207	ENSG00000234690	EPCAM-DT	-	EPCAM divergent transcript	ncRNA
103663	chr17	78781901	78784080	+	0	NA	promoter-TSS (NM_001365037)	promoter-TSS (NM_001365037)	-648	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
83257	chr16	23947051	23947400	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	111242	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
123782	chr19	55114651	55115150	+	0	NA	intron (NM_017607, intron 1 of 21)	G-rich|Low_complexity|Low_complexity	2737	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
27464	chr10	32006871	32007230	+	0	NA	Intergenic	Intergenic	49375	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
99271	chr17	49744671	49745230	+	0	NA	intron (NM_030802, intron 1 of 7)	AluJr|SINE|Alu	19181	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
161861	chr3	45856351	45856750	+	0	NA	intron (NM_001276379, intron 2 of 9)	L1PA10|LINE|L1	-14431	NM_020347	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
39901	chr11	62508351	62508930	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	37024	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
71087	chr14	104867351	104867650	+	0	NA	intron (NM_015005, intron 1 of 17)	L2b|LINE|L2	2186	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
140679	chr2	234101771	234102480	+	0	NA	Intergenic	Intergenic	51423	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
154124	chr22	31158651	31158750	+	0	NA	Intergenic	AluSq2|SINE|Alu	1419	NR_037496	100500901		NR_037496	ENSG00000264141	MIR3928	mir-3928	microRNA 3928	ncRNA
61283	chr13	50130201	50131550	+	0	NA	intron (NR_109974, intron 2 of 6)	CpG	-5334	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
118353	chr19	35646001	35646200	+	0	NA	Intergenic	AluJr|SINE|Alu	-2223	NM_001863	1340		NM_001863	ENSG00000126267	COX6B1	COX6B|COXG|COXVIb1|MC4DN7	cytochrome c oxidase subunit 6B1	protein-coding
34964	chr11	493801	494500	+	0	NA	TTS (NM_203387)	TTS (NM_203387)	12618	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
57352	chr12	121774501	121775550	+	0	NA	intron (NM_001080825, intron 10 of 11)	intron (NM_001080825, intron 10 of 11)	18663	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
113211	chr19	8455101	8455680	+	0	NA	intron (NM_031203, intron 1 of 16)	intron (NM_031203, intron 1 of 16)	10415	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
33145	chr10	112387421	112387680	+	0	NA	intron (NM_016234, intron 1 of 20)	intron (NM_016234, intron 1 of 20)	11352	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
216758	chr8	22472221	22472850	+	0	NA	intron (NM_005605, intron 1 of 13)	Tigger3|DNA|TcMar-Tigger	31457	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
161605	chr3	43193571	43193930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-87671	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
153291	chr22	24168301	24168500	+	0	NA	intron (NM_012295, intron 32 of 36)	intron (NM_012295, intron 32 of 36)	-13087	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
168408	chr3	142268651	142268950	+	0	NA	Intergenic	Intergenic	-43215	NM_001039547	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
164085	chr3	56467221	56467480	+	0	NA	intron (NM_015576, intron 1 of 16)	intron (NM_015576, intron 1 of 16)	1117	NR_132749	26059		NM_015576	ENSG00000187672	ERC2	CAST|CAST1|ELKSL|SPBC110|Spc110	ELKS/RAB6-interacting/CAST family member 2	protein-coding
221239	chr8	122467101	122467330	+	0	NA	intron (NR_131202, intron 2 of 3)	L1PREC2|LINE|L1	101429	NR_131202	105375734		NR_131202		SMILR	-	smooth muscle induced lncRNA, enhancer of proliferation	ncRNA
182692	chr5	68176871	68177300	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-12791	NR_105003	102467655		NR_105003	ENSG00000253787	LINC02219	-	long intergenic non-protein coding RNA 2219	ncRNA
165483	chr3	99819821	99820230	+	0	NA	intron (NR_110821, intron 1 of 2)	AluSg|SINE|Alu	2163	NM_032359	84319		NM_032359	ENSG00000184220	CMSS1	C3orf26	cms1 ribosomal small subunit homolog	protein-coding
14236	chr1	143229001	143229580	+	0	NA	Intergenic	Intergenic	193302	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
136349	chr2	176067621	176067980	+	0	NA	Intergenic	CpG	16162	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
237479	chrX	119788271	119788800	+	0	NA	intron (NM_001000, intron 2 of 2)	AluSg7|SINE|Alu	-1051	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
162814	chr3	49129971	49130330	+	0	NA	intron (NM_002292, intron 9 of 31)	intron (NM_002292, intron 9 of 31)	2900	NM_002292	3913		NM_002292	ENSG00000172037	LAMB2	LAMS|NPHS5|PIERS	laminin subunit beta 2	protein-coding
107477	chr18	47148651	47149080	+	0	NA	intron (NM_032124, intron 1 of 6)	MIR|SINE|MIR	1635	NM_001318765	84064		NM_032124	ENSG00000167220	HDHD2	3110052N05Rik|HEL-S-301	haloacid dehalogenase like hydrolase domain containing 2	protein-coding
206347	chr7	30347651	30348930	+	0	NA	intron (NM_147128, intron 2 of 4)	intron (NM_147128, intron 2 of 4)	-21760	NR_002186	222161		NM_152747		DKFZP586I1420	-	uncharacterized protein DKFZp586I1420	pseudo
55564	chr12	106138471	106139950	+	0	NA	5' UTR (NM_014840, exon 1 of 7)	5' UTR (NM_014840, exon 1 of 7)	823	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
206223	chr7	28749351	28749450	+	0	NA	intron (NM_182899, intron 6 of 9)	intron (NM_182899, intron 6 of 9)	63267	NM_001011666	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
217148	chr8	26044171	26044530	+	0	NA	intron (NM_022659, intron 1 of 15)	CpG	1063	NM_022659	64641		NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	EBF transcription factor 2	protein-coding
60941	chr13	46333871	46334400	+	0	NA	TTS (NM_025113)	TTS (NM_025113)	-36291	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
179793	chr5	371971	372530	+	0	NA	intron (NR_165159, intron 5 of 13)	intron (NR_165159, intron 5 of 13)	49640	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
126672	chr2	29293951	29294130	+	0	NA	intron (NM_004304, intron 9 of 28)	intron (NM_004304, intron 9 of 28)	-70140	NM_001353765	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
176590	chr4	98919021	98919480	+	0	NA	intron (NM_001331017, intron 1 of 7)	AluSc|SINE|Alu	9883	NM_001130678	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
43950	chr11	93655721	93655980	+	0	NA	Intergenic	Intergenic	-5832	NM_033395	85459		NM_033395	ENSG00000166004	CEP295	KIAA1731|SCKL11	centrosomal protein 295	protein-coding
15823	chr1	151323971	151324130	+	0	NA	intron (NM_001198774, intron 1 of 10)	AluSz|SINE|Alu	3366	NM_001198774	5298		NM_002651	ENSG00000143393	PI4KB	DFNA87|NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIII|PI4KIIIBETA|PIK4CB	phosphatidylinositol 4-kinase beta	protein-coding
54622	chr12	92595971	92596330	+	0	NA	Intergenic	Intergenic	-106693	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
161955	chr3	46236321	46236780	+	0	NA	Intergenic	Intergenic	-5831	NM_178328	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
15992	chr1	151984001	151985330	+	0	NA	intron (NM_002966, intron 2 of 2)	intron (NM_002966, intron 2 of 2)	9194	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
159828	chr3	16467351	16467780	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	46134	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
18806	chr1	167636121	167636380	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	6018	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
109679	chr19	1032351	1032780	+	0	NA	exon (NM_001303499, exon 4 of 7)	exon (NM_001303499, exon 4 of 7)	5957	NM_001303501	1265		NM_004368	ENSG00000064666	CNN2	-	calponin 2	protein-coding
143290	chr20	25283401	25283850	+	0	NA	intron (NM_002862, intron 13 of 19)	intron (NM_002862, intron 13 of 19)	35540	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
103764	chr17	78979001	78979280	+	0	NA	intron (NM_005567, intron 1 of 5)	intron (NM_005567, intron 1 of 5)	783	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
30064	chr10	73864951	73866300	+	0	NA	intron (NR_160045, intron 1 of 17)	intron (NR_160045, intron 1 of 17)	8930	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
223169	chr8	143544101	143544680	+	0	NA	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-2943	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
146037	chr20	47321371	47321530	+	0	NA	TTS (NR_024594)	TTS (NR_024594)	2948	NR_024594	100131496		NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
131316	chr2	96123451	96123850	+	0	NA	TTS (NM_001002036)	TTS (NM_001002036)	-7079	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
163063	chr3	49942001	49942200	+	0	NA	intron (NR_146071, intron 1 of 15)	AluJb|SINE|Alu	1950	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
87437	chr16	70739301	70740200	+	0	NA	intron (NM_001351157, intron 12 of 17)	intron (NM_001351157, intron 12 of 17)	-15345	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
66211	chr14	61296751	61297650	+	0	NA	Intergenic	Intergenic	-15862	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
159	chr1	587751	588050	+	0	NA	Intergenic	Intergenic	41109	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
177102	chr4	108080841	108081580	+	0	NA	intron (NM_001130713, intron 5 of 10)	intron (NM_001130713, intron 5 of 10)	76546	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
198532	chr6	106537101	106537630	+	0	NA	intron (NM_001371242, intron 8 of 21)	intron (NM_001371242, intron 8 of 21)	25510	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
70317	chr14	101828201	101829000	+	0	NA	intron (NM_001161725, intron 3 of 15)	intron (NM_001161725, intron 3 of 15)	18737	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
234715	chrX	21382771	21383030	+	0	NA	intron (NM_001168647, intron 1 of 20)	intron (NM_001168647, intron 1 of 20)	8482	NM_001330773	22866		NM_014927	ENSG00000149970	CNKSR2	CNK2|KSR2|MAGUIN|MRXSHG	connector enhancer of kinase suppressor of Ras 2	protein-coding
218819	chr8	59111401	59111800	+	0	NA	intron (NM_014729, intron 1 of 8)	(ACACAC)n|Simple_repeat|Simple_repeat	7547	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
52017	chr12	53984071	53984250	+	0	NA	promoter-TSS (NM_017409)	promoter-TSS (NM_017409)	-986	NM_017409	3226		NM_017409	ENSG00000180818	HOXC10	HOX3I	homeobox C10	protein-coding
123586	chr19	54463401	54465220	+	0	NA	promoter-TSS (NM_001301782).3	promoter-TSS (NM_001301782).3	-532	NM_001301782	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
138386	chr2	204108411	204109180	+	0	NA	Intergenic	Intergenic	172032	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
154977	chr22	37287501	37288000	+	0	NA	intron (NM_013385, intron 1 of 12)	MIRb|SINE|MIR	5242	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
121998	chr19	48574421	48575200	+	0	NA	promoter-TSS (NM_004605)	promoter-TSS (NM_004605)	-926	NM_004605	6820		NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
211889	chr7	111137951	111138500	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	47098	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
12189	chr1	100374351	100375180	+	0	NA	intron (NM_001319210, intron 2 of 16)	intron (NM_001319210, intron 2 of 16)	22259	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
31600	chr10	97362221	97362680	+	0	NA	intron (NM_015179, intron 30 of 33)	intron (NM_015179, intron 30 of 33)	-27721	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
23462	chr1	228555451	228555880	+	0	NA	Intergenic	CpG	-43377	NM_001287262	100129094		NM_001287262		BTNL10P	BTN4|BTNL10|BUTR1	butyrophilin like 10, pseudogene	pseudo
76696	chr15	75752001	75752400	+	0	NA	Intergenic	MIRc|SINE|MIR	10115	NR_036198	100423035		NR_036198	ENSG00000284385	MIR4313	-	microRNA 4313	ncRNA
220937	chr8	108463771	108463930	+	0	NA	intron (NM_014673, intron 5 of 10)	intron (NM_014673, intron 5 of 10)	20226	NM_014673	9694		NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
104418	chr17	81063571	81064130	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	6116	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
170151	chr3	183517471	183517930	+	0	NA	intron (NM_130446, intron 2 of 6)	intron (NM_130446, intron 2 of 6)	-31035	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
221148	chr8	119641401	119642000	+	0	NA	intron (NM_001330600, intron 1 of 25)	MER5A|DNA|hAT-Charlie	-2861	NM_006209	5168		NM_006209	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
166727	chr3	121656101	121656300	+	0	NA	intron (NM_005335, intron 3 of 13)	intron (NM_005335, intron 3 of 13)	4703	NM_005335	3059		NM_005335	ENSG00000180353	HCLS1	CTTNL|HS1|lckBP1|p75	hematopoietic cell-specific Lyn substrate 1	protein-coding
17513	chr1	156749021	156749500	+	0	NA	intron (NM_001319186, intron 1 of 5)	intron (NM_001319186, intron 1 of 5)	2033	NM_001319188	3068		NM_004494	ENSG00000143321	HDGF	HMG1L2	heparin binding growth factor	protein-coding
114852	chr19	13851101	13852030	+	0	NA	Intergenic	Intergenic	-8647	NR_036515	284454		NR_036515		MIR23AHG	Smyca	miR-23a/27a/24-2 cluster host gene	ncRNA
62228	chr13	98519971	98520950	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	1665	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
229173	chr9	114538221	114538580	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-32927	NM_015404	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
145700	chr20	45019721	45019980	+	0	NA	intron (NM_006282, intron 9 of 10)	intron (NM_006282, intron 9 of 10)	53338	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
169079	chr3	153629171	153629330	+	0	NA	intron (NR_146713, intron 3 of 6)	intron (NR_146713, intron 3 of 6)	133276	NR_146713	105374165		NR_146713		LINC02006	-	long intergenic non-protein coding RNA 2006	ncRNA
176329	chr4	88033271	88033630	+	0	NA	intron (NR_156488, intron 2 of 13)	intron (NR_156488, intron 2 of 13)	25815	NM_000297	5311		NM_000297	ENSG00000118762	PKD2	APKD2|PC2|PKD4|Pc-2|TRPP2	polycystin 2, transient receptor potential cation channel	protein-coding
36004	chr11	2895151	2895800	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-4216	NM_183233	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
206431	chr7	32728601	32729330	+	0	NA	non-coding (NR_003502, exon 1 of 1)	non-coding (NR_003502, exon 1 of 1)	1015	NR_003502	441208		NM_001013723		ZNRF2P1	-	zinc and ring finger 2 pseudogene 1	pseudo
52834	chr12	57065251	57065350	+	0	NA	intron (NM_015257, intron 3 of 7)	Tigger1|DNA|TcMar-Tigger	13491	NM_001130963	23306		NM_015257	ENSG00000166881	NEMP1	TMEM194|TMEM194A	nuclear envelope integral membrane protein 1	protein-coding
53354	chr12	64652401	64652600	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJb|SINE|Alu	-29895	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
217239	chr8	26670601	26671030	+	0	NA	Intergenic	Intergenic	92410	NM_001244604	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
101005	chr17	64660001	64660430	+	0	NA	intron (NM_022739, intron 1 of 18)	intron (NM_022739, intron 1 of 18)	2092	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
178960	chr4	159204451	159204750	+	0	NA	intron (NM_001351724, intron 3 of 30)	intron (NM_001351724, intron 3 of 30)	-23032	NM_001351726	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
104685	chr17	81511801	81514200	+	0	NA	promoter-TSS (NR_037688)	promoter-TSS (NR_037688)	-201	NR_037688	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
155701	chr22	39088751	39089380	+	0	NA	Intergenic	Intergenic	-8159	NM_001166004	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
152668	chr22	21587751	21588730	+	0	NA	intron (NR_046082, intron 1 of 3)	L3|LINE|CR1	20526	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
65482	chr14	51867601	51868480	+	0	NA	intron (NM_001243774, intron 1 of 2)	L2c|LINE|L2	7428	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
112134	chr19	5607421	5608300	+	0	NA	intron (NM_014649, intron 9 of 20)	intron (NM_014649, intron 9 of 20)	14916	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
8104	chr1	39186651	39186750	+	0	NA	intron (NM_012090, intron 1 of 92)	AluJr|SINE|Alu	102533	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
87955	chr16	79628251	79628780	+	0	NA	Intergenic	Intergenic	-27778	NM_001031804	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
93466	chr17	18785501	18785900	+	0	NA	intron (NM_001316919, intron 1 of 6)	AluJo|SINE|Alu	-3335	NM_001316920	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
156211	chr22	40330201	40330830	+	0	NA	3' UTR (NM_001162501, exon 23 of 23)	3' UTR (NM_001162501, exon 23 of 23)	-15985	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
237497	chrX	119953521	119953780	+	0	NA	Intergenic	L1MC2|LINE|L1	-9899	NM_024528	79576		NM_024528	ENSG00000101882	NKAP	MRXSHD	NFKB activating protein	protein-coding
116291	chr19	17752721	17753480	+	0	NA	intron (NM_001384394, intron 1 of 28)	intron (NM_001384394, intron 1 of 28)	-1109	NM_001384395	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
22046	chr1	210584401	210584630	+	0	NA	intron (NM_018194, intron 9 of 11).2	intron (NM_018194, intron 9 of 11).2	255149	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
107499	chr18	47911771	47913480	+	0	NA	intron (NM_001135937, intron 1 of 9)	MLT1M|LTR|ERVL-MaLR	18034	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
185501	chr5	131317371	131317830	+	0	NA	intron (NM_001375633, intron 2 of 5)	intron (NM_001375633, intron 2 of 5)	53547	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
361	chr1	1021501	1022150	+	0	NA	intron (NM_198576, intron 1 of 35)	intron (NM_198576, intron 1 of 35)	1705	NM_198576	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
169373	chr3	160437771	160437950	+	0	NA	3' UTR (NM_173084, exon 3 of 3)	3' UTR (NM_173084, exon 3 of 3)	11926	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
176023	chr4	82349471	82349900	+	0	NA	Intergenic	HAL1|LINE|L1	24306	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
120278	chr19	43432821	43433330	+	0	NA	Intergenic	Intergenic	18185	NM_001130011	83639		NM_031451	ENSG00000131126	TEX101	CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP	testis expressed 101	protein-coding
51740	chr12	53231931	53233380	+	0	NA	promoter-TSS (NM_001243731)	promoter-TSS (NM_001243731)	-399	NM_001243730	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
173510	chr4	9602321	9603080	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-46384	NR_031688	100302277		NR_031688	ENSG00000221275	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2	microRNA 548i-2	ncRNA
227253	chr9	89357371	89357530	+	0	NA	exon (NM_001354697, exon 15 of 17)	exon (NM_001354697, exon 15 of 17)	38599	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
231286	chr9	130030671	130032030	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	11839	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
91863	chr17	7231021	7231280	+	0	NA	intron (NM_004422, intron 1 of 14)	intron (NM_004422, intron 1 of 14)	3367	NM_004422	1856		NM_004422	ENSG00000004975	DVL2	-	dishevelled segment polarity protein 2	protein-coding
161348	chr3	40316901	40317480	+	0	NA	Intergenic	Intergenic	7483	NM_005875	10289		NM_005875	ENSG00000114784	EIF1B	GC20	eukaryotic translation initiation factor 1B	protein-coding
21154	chr1	203693121	203693980	+	0	NA	intron (NM_001365783, intron 2 of 20)	intron (NM_001365783, intron 2 of 20)	-36031	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
44504	chr11	106078951	106079150	+	0	NA	intron (NM_015423, intron 1 of 5)	L1ME3G|LINE|L1	-1312	NM_001330359	143879		NM_152433	ENSG00000182359	KBTBD3	BKLHD3	kelch repeat and BTB domain containing 3	protein-coding
1774	chr1	6035451	6036100	+	0	NA	intron (NM_001199860, intron 1 of 15)	L2a|LINE|L2	1087	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
112616	chr19	6751271	6751980	+	0	NA	TTS (NM_004240)	TTS (NM_004240)	11945	NM_001288963	9322		NM_004240	ENSG00000125733	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
152696	chr22	21628671	21629600	+	0	NA	exon (NM_001017964, exon 4 of 5)	exon (NM_001017964, exon 4 of 5)	887	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
212110	chr7	116213101	116213300	+	0	NA	intron (NM_015641, intron 1 of 6)	intron (NM_015641, intron 1 of 6)	2661	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
49561	chr12	26853271	26854200	+	0	NA	Intergenic	LTR81B|LTR|Gypsy	-20541	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
238216	chrX	139905871	139906030	+	0	NA	intron (NM_001353810, intron 2 of 29)	intron (NM_001353810, intron 2 of 29)	18281	NR_030230	574508		NR_030230	ENSG00000207633	MIR505	MIRN505|hsa-mir-505|mir-505	microRNA 505	ncRNA
38110	chr11	35227171	35227600	+	0	NA	intron (NM_001202555, intron 9 of 9)	AluJb|SINE|Alu	64435	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
77392	chr15	83063551	83064080	+	0	NA	intron (NM_025238, intron 1 of 7)	L2a|LINE|L2	3437	NM_001011885	53339		NM_025238	ENSG00000064726	BTBD1	C15orf1|NS5ATP8	BTB domain containing 1	protein-coding
26440	chr10	17250651	17250950	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-20815	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
4369	chr1	20720701	20720900	+	0	NA	3' UTR (NM_001103161, exon 10 of 10)	3' UTR (NM_001103161, exon 10 of 10)	-2793	NM_001122819	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
109697	chr19	1053251	1053750	+	0	NA	exon (NM_019112, exon 24 of 47)	exon (NM_019112, exon 24 of 47)	-12459	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
195021	chr6	35470301	35471180	+	0	NA	TTS (NM_007104)	TTS (NM_007104)	232	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
58943	chr13	19774621	19774880	+	0	NA	intron (NM_001354909, intron 1 of 8)	AluSz6|SINE|Alu	8195	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
146210	chr20	48786921	48787180	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	40949	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
134181	chr2	134294671	134294830	+	0	NA	intron (NM_001371457, intron 3 of 16)	LTR10C|LTR|ERV1	40678	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
71439	chr14	105681451	105681550	+	0	NA	Intergenic	(CCCTGT)n|Simple_repeat|Simple_repeat	-8693	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
75431	chr15	65791301	65792960	+	0	NA	5' UTR (NM_001376920, exon 1 of 31)	5' UTR (NM_001376920, exon 1 of 31)	163	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
173767	chr4	17324321	17324750	+	0	NA	Intergenic	Intergenic	-3653	NR_145770	109616994		NR_145770	ENSG00000206780	SNORA75B	-	small nucleolar RNA, H/ACA box 75B	snoRNA
92042	chr17	7494301	7494780	+	0	NA	intron (NM_000937, intron 1 of 29)	AluSx1|SINE|Alu	10174	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
105842	chr18	2997571	2997900	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	14212	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
171445	chr3	196289401	196289600	+	0	NA	Intergenic	Intergenic	-1774	NM_005017	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
178648	chr4	152400171	152400650	+	0	NA	intron (NM_033632, intron 2 of 11)	AluJo|SINE|Alu	-17881	NM_001013415	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
89264	chr16	88661571	88661730	+	0	NA	intron (NM_002461, intron 1 of 9)	L1MD1|LINE|L1	1441	NM_002461	4597		NM_002461	ENSG00000167508	MVD	FP17780|MDDase|MPD|POROK7	mevalonate diphosphate decarboxylase	protein-coding
88138	chr16	81623121	81623800	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	12112	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
162257	chr3	47288951	47289250	+	0	NA	intron (NM_025010, intron 1 of 9)	intron (NM_025010, intron 1 of 9)	6156	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
163369	chr3	50478251	50478550	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	25234	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
152940	chr22	22822151	22823230	+	0	NA	promoter-TSS (NR_030755)	promoter-TSS (NR_030755)	-86	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
84201	chr16	29865051	29865150	+	0	NA	intron (NR_015396, intron 3 of 5)	intron (NR_015396, intron 3 of 5)	1266	NR_015396	440356		NR_015396	ENSG00000293487	CDIPTOSP	CDIPT-AS1|lnc-CTHCC	CDIP transferase opposite strand, pseudogene	ncRNA
123807	chr19	55164771	55164930	+	0	NA	intron (NM_178837, intron 4 of 11)	MIRb|SINE|MIR	1763	NM_001256715	352909		NM_178837	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	dynein axonemal assembly factor 3	protein-coding
25705	chr10	8987651	8987950	+	0	NA	Intergenic	Intergenic	89811	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
63370	chr13	114050471	114050630	+	0	NA	intron (NM_001320822, intron 3 of 23).2	intron (NM_001320822, intron 3 of 23).2	27405	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
92554	chr17	8961851	8962350	+	0	NA	intron (NM_001142633, intron 1 of 18)	MIR|SINE|MIR	3607	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
237511	chrX	120015301	120016150	+	0	NA	promoter-TSS (NR_131250)	promoter-TSS (NR_131250)	-174	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
142941	chr20	18738021	18738980	+	0	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	-39792	NR_109955	101929526		NR_109955	ENSG00000233993	DTD1-AS1	-	DTD1 antisense RNA 1	ncRNA
53633	chr12	68177271	68177430	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-17610	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
232442	chr9	136114471	136114830	+	0	NA	TTS (NM_001256526)	TTS (NM_001256526)	-3142	NR_165242	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
115926	chr19	16620321	16620950	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	7569	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
177474	chr4	113772271	113772430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-10423	NM_172114	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
237836	chrX	130084921	130085700	+	0	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	25187	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
155639	chr22	38956521	38956780	+	0	NA	promoter-TSS (NM_001270406)	promoter-TSS (NM_001270406)	-872	NM_001193289	100913187		NM_001193289		APOBEC3A_B	A3A|APOBEC3A	APOBEC3A and APOBEC3B deletion hybrid	protein-coding
56899	chr12	120358451	120358950	+	0	NA	intron (NM_002442, intron 7 of 14)	intron (NM_002442, intron 7 of 14)	10464	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
164553	chr3	63975721	63976280	+	0	NA	intron (NM_001128149, intron 1 of 8)	intron (NM_001128149, intron 1 of 8)	8206	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
49292	chr12	20581651	20581750	+	0	NA	intron (NM_001378409, intron 1 of 14)	AluYa5|SINE|Alu	9621	NM_001378409	5139		NM_000921	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB	phosphodiesterase 3A	protein-coding
121966	chr19	48484251	48484550	+	0	NA	TTS (NM_001080434)	TTS (NM_001080434)	15031	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
88831	chr16	87485701	87486250	+	0	NA	intron (NM_015144, intron 1 of 12)	intron (NM_015144, intron 1 of 12)	7049	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
140697	chr2	234291681	234293150	+	0	NA	Intergenic	Intergenic	162180	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
230566	chr9	128502471	128502630	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluJb|SINE|Alu	-2142	NM_001499	2733		NM_001499	ENSG00000119392	GLE1	CAAHC|CAAHD|GLE1L|LCCS|LCCS1|hGLE1	GLE1 RNA export mediator	protein-coding
43234	chr11	75451271	75451750	+	0	NA	5' UTR (NM_001351167, exon 1 of 13)	5' UTR (NM_001351167, exon 1 of 13)	817	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
123301	chr19	53565101	53565530	+	0	NA	intron (NM_001317117, intron 3 of 5)	intron (NM_001317117, intron 3 of 5)	10008	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
138501	chr2	207155601	207157000	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	9648	NM_003709	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
225671	chr9	36468501	36468900	+	0	NA	Intergenic	AluSq|SINE|Alu	-67502	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
3421	chr1	15832901	15833890	+	0	NA	TTS (NR_024279)	TTS (NR_024279)	-14312	NM_015001	23013		NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RATARS|RBM15C|SHARP	spen family transcriptional repressor	protein-coding
113354	chr19	8666871	8667280	+	0	NA	intron (NM_001378601, intron 1 of 2)	intron (NM_001378601, intron 1 of 2)	11498	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
108664	chr18	76820271	76820430	+	0	NA	intron (NR_040024, intron 1 of 2)	AluJb|SINE|Alu	1945	NR_040024	100131655		NR_040024	ENSG00000264278	ZNF236-DT	-	ZNF236 divergent transcript	ncRNA
123034	chr19	51147601	51148000	+	0	NA	intron (NM_014385, intron 6 of 6)	MER58A|DNA|hAT-Charlie	5341	NR_102350	27036		NM_014385	ENSG00000168995	SIGLEC7	AIRM-1|AIRM1|CD328|CDw328|D-siglec|QA79|SIGLEC-7|SIGLEC19P|SIGLECP2|p75|p75/AIRM1	sialic acid binding Ig like lectin 7	protein-coding
7442	chr1	32992251	32992950	+	0	NA	Intergenic	Intergenic	-27791	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
27297	chr10	30431351	30431850	+	0	NA	Intergenic	Intergenic	-2421	NM_001244134	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
15465	chr1	150352501	150352900	+	0	NA	intron (NR_146768, intron 15 of 15)	intron (NR_146768, intron 15 of 15)	-11411	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
231663	chr9	131667511	131668000	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-16352	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
93280	chr17	18106851	18107150	+	0	NA	TTS (NR_164159)	TTS (NR_164159)	-1756	NM_016239	51168		NM_016239	ENSG00000091536	MYO15A	DFNB3|MYO15	myosin XVA	protein-coding
69689	chr14	98166771	98166930	+	0	NA	Intergenic	Intergenic	-188726	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
64935	chr14	35803501	35803980	+	0	NA	intron (NM_014990, intron 1 of 40)	AluSz|SINE|Alu	5555	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
217167	chr8	26296571	26297450	+	0	NA	intron (NM_002717, intron 2 of 9)	MIR3|SINE|MIR	3794	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
215974	chr8	8789771	8789980	+	0	NA	intron (NM_004225, intron 2 of 2)	MER74A|LTR|ERVL	87938	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
169046	chr3	153159901	153161700	+	0	NA	Intergenic	CpG	-1426	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
130189	chr2	84314901	84315180	+	0	NA	Intergenic	Intergenic	24358	NR_003663	388965		NM_001013648		FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
200187	chr6	130848771	130849200	+	0	NA	intron (NM_001350306, intron 17 of 17)	intron (NM_001350306, intron 17 of 17)	21579	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
112962	chr19	7827801	7828300	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2168	NM_001159944	115704		NM_145245	ENSG00000142459	EVI5L	-	ecotropic viral integration site 5 like	protein-coding
206368	chr7	30592951	30593330	+	0	NA	Intergenic	AluSg|SINE|Alu	-1595	NM_001316772	2617		NM_002047	ENSG00000106105	GARS1	CMT2D|DSMAV|GARS|GlyRS|HMN5|HMN5A|HMND5|SMAD1|SMAJI	glycyl-tRNA synthetase 1	protein-coding
95673	chr17	38325401	38325600	+	0	NA	3' UTR (NM_001004334, exon 11 of 11)	3' UTR (NM_001004334, exon 11 of 11)	18456	NM_001004334	440435		NM_001004334	ENSG00000277399	GPR179	CSNB1E|GPR158L|GPR158L1	G protein-coupled receptor 179	protein-coding
154808	chr22	37017371	37017730	+	0	NA	intron (NM_003312, intron 2 of 2)	intron (NM_003312, intron 2 of 2)	1897	NM_003312	7263		NM_003312	ENSG00000128311	TST	RDS	thiosulfate sulfurtransferase	protein-coding
189765	chr5	176644501	176645250	+	0	NA	intron (NM_001375362, intron 6 of 8)	intron (NM_001375362, intron 6 of 8)	-2609	NM_130465	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
15490	chr1	150387151	150387850	+	0	NA	intron (NM_015203, intron 1 of 10)	intron (NM_015203, intron 1 of 10)	23389	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
20724	chr1	200882401	200882800	+	0	NA	Intergenic	L2a|LINE|L2	-8931	NM_018265	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
9219	chr1	45680021	45680500	+	0	NA	intron (NM_021639, intron 2 of 12)	AluSz6|SINE|Alu	6273	NM_021639	60313		NM_021639	ENSG00000159592	GPBP1L1	SP192	GC-rich promoter binding protein 1 like 1	protein-coding
232711	chr9	136572051	136573150	+	0	NA	Intergenic	Intergenic	24758	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
43452	chr11	77992251	77992350	+	0	NA	intron (NM_033547, intron 1 of 22)	AluSz6|SINE|Alu	2368	NM_033547	92105		NM_033547	ENSG00000149262	INTS4	INT4|MST093	integrator complex subunit 4	protein-coding
165158	chr3	72274401	72274900	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	123393	NR_038221	201617		NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
102681	chr17	76110121	76110380	+	0	NA	Intergenic	AluY|SINE|Alu	-6463	NM_001375976	23265		NM_015219	ENSG00000182473	EXOC7	2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|NEDSEBA|YJL085W	exocyst complex component 7	protein-coding
128682	chr2	61507421	61507680	+	0	NA	intron (NM_003400, intron 4 of 24)	AluJr4|SINE|Alu	30806	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
231764	chr9	132235421	132235680	+	0	NA	intron (NM_032536, intron 5 of 7)	intron (NM_032536, intron 5 of 7)	73492	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
48380	chr12	9468951	9469350	+	0	NA	intron (NR_153413, intron 2 of 45)	intron (NR_153413, intron 2 of 45)	20863	NR_153413	408186		NR_153413		LOC408186	OVOS|OVOS1	alpha-2-macroglobulin like 1 pseudogene	pseudo
39862	chr11	62424271	62425180	+	0	NA	Intergenic	AluJo|SINE|Alu	5692	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
108763	chr18	77127921	77129050	+	0	NA	intron (NM_001025100, intron 1 of 3)	L1MD2|LINE|L1	4298	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
6906	chr1	31619051	31620330	+	0	NA	exon (NM_001525, exon 4 of 9)	exon (NM_001525, exon 4 of 9)	2001	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
114780	chr19	13763451	13763550	+	0	NA	TTS (NM_001320568)	TTS (NM_001320568)	-1022	NM_032285	84245		NM_032285	ENSG00000037757	MRI1	M1Pi|MRDI|MTNA|Ypr118w	methylthioribose-1-phosphate isomerase 1	protein-coding
38451	chr11	45355071	45356200	+	0	NA	intron (NR_120558, intron 1 of 1)	CpG	264	NR_120558	101928812		NR_120557	ENSG00000254427	LINC02696	-	long intergenic non-protein coding RNA 2696	ncRNA
64457	chr14	24239351	24239650	+	0	NA	TTS (NM_001351026)	TTS (NM_001351026)	3123	NM_001099274	26277		NM_012461	ENSG00000092330	TINF2	DKCA3|TIN2	TERF1 interacting nuclear factor 2	protein-coding
80695	chr16	3054551	3055280	+	0	NA	intron (NR_123723, intron 4 of 4)	intron (NR_123723, intron 4 of 4)	4455	NR_123723	100507419		NR_123723		MMP25-AS1	-	MMP25 antisense RNA 1	ncRNA
187668	chr5	143209401	143209600	+	0	NA	intron (NR_146198, intron 21 of 22)	AluSx1|SINE|Alu	17000	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
137206	chr2	191202051	191202350	+	0	NA	Intergenic	MIRb|SINE|MIR	-43204	NM_001330237	4430		NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
212069	chr7	115007321	115007900	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	-71348	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
98334	chr17	46271451	46271750	+	0	NA	Intergenic	Intergenic	-23531	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
159104	chr3	12573771	12573930	+	0	NA	intron (NM_014160, intron 4 of 7)	AluY|SINE|Alu	-12851	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
60035	chr13	32645851	32646530	+	0	NA	intron (NM_015032, intron 1 of 34)	AluJb|SINE|Alu	59738	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
121612	chr19	47420351	47421330	+	0	NA	intron (NM_001346148, intron 1 of 12)	(TCTCTC)n|Simple_repeat|Simple_repeat	-1313	NM_001009813	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
224757	chr9	21967071	21967430	+	0	NA	TTS (NM_001363763)	TTS (NM_001363763)	111	NR_024274	51198		NM_016349		CDKN2A-AS1	C9orf53|CDKN2A-DT|bA149I2.3	CDKN2A antisense RNA 1	ncRNA
223237	chr8	143614571	143614730	+	0	NA	exon (NM_001317783, exon 5 of 11)	exon (NM_001317783, exon 5 of 11)	2899	NM_003313	7264		NM_003313	ENSG00000104522	GFUS	FX|P35B|SDR4E1|TSTA3	GDP-L-fucose synthase	protein-coding
83531	chr16	27538871	27539430	+	0	NA	intron (NM_001520, intron 2 of 36)	L2a|LINE|L2	10763	NM_001520	2975		NM_001520	ENSG00000077235	GTF3C1	TFIIIC|TFIIIC220|TFIIICalpha	general transcription factor IIIC subunit 1	protein-coding
80660	chr16	3011951	3013500	+	0	NA	promoter-TSS (NM_020982)	promoter-TSS (NM_020982)	-198	NM_020982	9080		NM_020982	ENSG00000213937	CLDN9	DFNB116	claudin 9	protein-coding
2159	chr1	8422121	8422780	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	1382	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
7516	chr1	33612971	33613130	+	0	NA	intron (NM_052896, intron 40 of 69)	intron (NM_052896, intron 40 of 69)	140405	NM_001377376	7579		NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
14125	chr1	120946351	120946650	+	0	NA	intron (NR_109754, intron 1 of 2)	AluSx|SINE|Alu	3900	NR_104073	101954264		NR_104073	ENSG00000277610	RNVU1-4	RNU1-102|RNU1-50|RNVU1-5|vU1.4|vU1.5	RNA, variant U1 small nuclear 4	snRNA
193636	chr6	30812921	30813630	+	0	NA	non-coding (NR_130726, exon 2 of 2)	non-coding (NR_130726, exon 2 of 2)	17384	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
81192	chr16	4482621	4483080	+	0	NA	intron (NM_001286268, intron 1 of 5).2	AluSx|SINE|Alu	6452	NM_002134	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
159472	chr3	14139901	14140350	+	0	NA	intron (NM_024334, intron 11 of 11)	intron (NM_024334, intron 11 of 11)	15073	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
82596	chr16	18819301	18820730	+	0	NA	intron (NM_015092, intron 55 of 62)	AluSg4|SINE|Alu	-18466	NM_015161	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
187696	chr5	143357001	143357600	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	45983	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
56525	chr12	116676871	116677030	+	0	NA	Intergenic	Intergenic	61119	NM_001353625	79794		NM_024738	ENSG00000111412	SPRING1	C12orf49|LUR1|POST1|SPRING	SREBF pathway regulator in golgi 1	protein-coding
192423	chr6	24877801	24878050	+	0	NA	promoter-TSS (NM_015864)	promoter-TSS (NM_015864)	-560	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
185386	chr5	128082071	128084100	+	0	NA	promoter-TSS (NR_152804)	promoter-TSS (NR_152804)	90	NR_152805	644873		NR_015360	ENSG00000245937	SLC12A2-DT	LINC01184	SLC12A2 divergent transcript	ncRNA
133728	chr2	127385151	127385950	+	0	NA	intron (NM_001371911, intron 1 of 16)	Tigger1|DNA|TcMar-Tigger	2425	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
207085	chr7	39976751	39977050	+	0	NA	intron (NM_003718, intron 1 of 13)	intron (NM_003718, intron 1 of 13)	26540	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
210065	chr7	96075621	96076150	+	0	NA	intron (NM_004411, intron 14 of 16)	intron (NM_004411, intron 14 of 16)	143871	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA
84886	chr16	31190921	31191400	+	0	NA	intron (NR_028388, intron 13 of 13)	intron (NR_028388, intron 13 of 13)	-10725	NR_102400	100652740		NR_102400	ENSG00000261359	PYCARD-AS1	C16orf98|PYCARDOS	PYCARD antisense RNA 1	ncRNA
29551	chr10	71320651	71320750	+	0	NA	intron (NM_001363518, intron 1 of 5)	intron (NM_001363518, intron 1 of 5)	1441	NM_018344	55315		NM_018344	ENSG00000198246	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 member 3	protein-coding
193114	chr6	28949471	28949830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	5866	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
174159	chr4	36256501	36257150	+	0	NA	intron (NR_122080, intron 1 of 2)	intron (NR_122080, intron 1 of 2)	307	NR_122080	439933		NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
41164	chr11	65610571	65611300	+	0	NA	intron (NM_002419, intron 1 of 9)	intron (NM_002419, intron 1 of 9)	3286	NM_002419	4296		NM_002419	ENSG00000173327	MAP3K11	MEKK11|MLK-3|MLK3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding
37857	chr11	33739971	33740630	+	0	NA	TTS (NM_033406)	TTS (NM_033406)	-3821	NM_203329	966		NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
13348	chr1	113844171	113844330	+	0	NA	intron (NM_012411, intron 9 of 18)	AluSg|SINE|Alu	-12385	NR_037864	100287722		NR_037864	ENSG00000226167	AP4B1-AS1	-	AP4B1 antisense RNA 1	ncRNA
20212	chr1	193128901	193129100	+	0	NA	intron (NM_024529, intron 2 of 16)	AluSg4|SINE|Alu	6969	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
139018	chr2	218391221	218391680	+	0	NA	exon (NM_000578, exon 11 of 15)	exon (NM_000578, exon 11 of 15)	-6783	NM_001206878	58190		NM_021198	ENSG00000144579	CTDSP1	NIF3|NLI-IF|NLIIF|SCP1	CTD small phosphatase 1	protein-coding
35471	chr11	1483271	1483430	+	0	NA	intron (NM_001172223, intron 1 of 4)	intron (NM_001172223, intron 1 of 4)	-2464	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
31479	chr10	96578521	96578780	+	0	NA	intron (NM_020123, intron 1 of 14)	MER117|DNA|hAT-Charlie	8362	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
212363	chr7	127651051	127652850	+	0	NA	promoter-TSS (NM_014390)	promoter-TSS (NM_014390)	-244	NM_014390	27044		NM_014390	ENSG00000197157	SND1	TDRD11|TSN|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
191458	chr6	10751421	10752330	+	0	NA	intron (NM_030969, intron 4 of 5)	intron (NM_030969, intron 4 of 5)	4070	NM_030969	81853		NM_030969	ENSG00000137210	TMEM14B	-	transmembrane protein 14B	protein-coding
12387	chr1	101277551	101278280	+	0	NA	Intergenic	AluSz|SINE|Alu	40896	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
201539	chr6	149169871	149170030	+	0	NA	Intergenic	Intergenic	-47974	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
131537	chr2	96637271	96639130	+	0	NA	promoter-TSS (NR_047658)	promoter-TSS (NR_047658)	112	NR_047657	55683		NM_017991	ENSG00000114982	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
198655	chr6	107818821	107819430	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	5188	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
123978	chr19	55433121	55433800	+	0	NA	exon (NM_001145176, exon 4 of 4)	exon (NM_001145176, exon 4 of 4)	9403	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
24835	chr10	356671	356830	+	0	NA	intron (NM_014974, intron 23 of 36)	intron (NM_014974, intron 23 of 36)	176756	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
223010	chr8	143282951	143283050	+	0	NA	Intergenic	Intergenic	-1300	NR_120682	100507316		NR_120682	ENSG00000253716	MINCR	LINC01604	MYC-induced long non-coding RNA	ncRNA
144945	chr20	37051151	37051450	+	0	NA	intron (NM_183404, intron 11 of 20)	AluSq2|SINE|Alu	44697	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
146804	chr20	50981171	50982130	+	0	NA	Intergenic	Intergenic	22832	NM_014484	27304		NM_014484	ENSG00000124217	MOCS3	UBA4	molybdenum cofactor synthesis 3	protein-coding
59877	chr13	30672401	30672600	+	0	NA	Intergenic	Intergenic	38285	NM_001321534	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
230598	chr9	128587301	128588100	+	0	NA	intron (NM_001375310, intron 20 of 57)	intron (NM_001375310, intron 20 of 57)	35113	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
74795	chr15	63402701	63403330	+	0	NA	intron (NR_120375, intron 4 of 6)	intron (NR_120375, intron 4 of 6)	12785	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
229720	chr9	124859501	124860430	+	0	NA	intron (NM_007209, intron 3 of 3)	intron (NM_007209, intron 3 of 3)	1992	NM_007209	11224		NM_007209	ENSG00000136942	RPL35	DBA19|L35|uL29	ribosomal protein L35	protein-coding
189839	chr5	177096121	177096730	+	0	NA	intron (NM_022963, intron 13 of 15)	intron (NM_022963, intron 13 of 15)	6875	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
159565	chr3	14890521	14891180	+	0	NA	intron (NM_152536, intron 4 of 19)	MIRc|SINE|MIR	56655	NR_046252	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
226523	chr9	71898851	71899550	+	0	NA	intron (NM_016014, intron 1 of 4)	intron (NM_016014, intron 1 of 4)	11993	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
98653	chr17	47827051	47827350	+	0	NA	exon (NM_148887, exon 4 of 6)	exon (NM_148887, exon 4 of 6)	4341	NR_037575	124995		NM_145255	ENSG00000159111	MRPL10	L10MT|MRP-L10|MRP-L8|MRPL8|RPML8|uL10m	mitochondrial ribosomal protein L10	protein-coding
198905	chr6	109695551	109695650	+	0	NA	intron (NM_014845, intron 1 of 22)	(AC)n|Simple_repeat|Simple_repeat	4304	NM_014845	9896		NM_014845	ENSG00000112367	FIG4	ALS11|BOP|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1	FIG4 phosphoinositide 5-phosphatase	protein-coding
70119	chr14	100248651	100249300	+	0	NA	intron (NM_003403, intron 1 of 4)	AluY|SINE|Alu	9831	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
225358	chr9	34666901	34667780	+	0	NA	Intergenic	Intergenic	-1284	NM_001320037	730098		NM_001320037	ENSG00000187186	LOC730098	-	uncharacterized LOC730098	protein-coding
50789	chr12	49047571	49047930	+	0	NA	intron (NM_003482, intron 15 of 54)	intron (NM_003482, intron 15 of 54)	13044	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
132185	chr2	101828001	101828830	+	0	NA	intron (NM_001384572, intron 4 of 29)	intron (NM_001384572, intron 4 of 29)	130150	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
28205	chr10	44967701	44969500	+	0	NA	intron (NM_032023, intron 1 of 10)	intron (NM_032023, intron 1 of 10)	8798	NM_032023	83937		NM_032023	ENSG00000107551	RASSF4	AD037	Ras association domain family member 4	protein-coding
187940	chr5	149079901	149080250	+	0	NA	intron (NR_122044, intron 2 of 2)	L1MA9|LINE|L1	16758	NR_122044	255187		NM_001101342	ENSG00000250072	SH3TC2-DT	-	SH3TC2 divergent transcript	ncRNA
203425	chr7	332521	333280	+	0	NA	Intergenic	CpG	41671	NR_164665	100288524		NM_001195127	ENSG00000248767	FOXL3-OT1	FOXL3|WI2-2373I1.2	FOXL3 overlapping transcript 1	ncRNA
61244	chr13	49976551	49976950	+	0	NA	Intergenic	Intergenic	19751	NR_037407	100500908		NR_037407	ENSG00000264864	MIR3613	-	microRNA 3613	ncRNA
74760	chr15	63232461	63233230	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	43239	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
117809	chr19	29944551	29944650	+	0	NA	intron (NR_045557, intron 1 of 9)	intron (NR_045557, intron 1 of 9)	2361	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
827	chr1	1571771	1571930	+	0	NA	intron (NM_014188, intron 1 of 4)	AluY|SINE|Alu	3013	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
77022	chr15	78621751	78622050	+	0	NA	promoter-TSS (NM_000743)	promoter-TSS (NM_000743)	-904	NR_046313	1136		NM_000743	ENSG00000080644	CHRNA3	BAIPRCK|LNCR2|NACHRA3|PAOD2	cholinergic receptor nicotinic alpha 3 subunit	protein-coding
215038	chr7	152461771	152462330	+	0	NA	Intergenic	AluSx|SINE|Alu	-2074	NR_027387	100128822		NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
206396	chr7	30938621	30938900	+	0	NA	Intergenic	Intergenic	-25193	NM_000823	2692		NM_000823	ENSG00000106128	GHRHR	GHRFR|GRFR|IGHD1B|IGHD4	growth hormone releasing hormone receptor	protein-coding
90216	chr17	498471	498630	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-52610	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
213702	chr7	140222621	140223130	+	0	NA	Intergenic	Intergenic	45614	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
13702	chr1	116760601	116761050	+	0	NA	intron (NM_001767, intron 3 of 4)	intron (NM_001767, intron 3 of 4)	6395	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
155279	chr22	38083551	38084280	+	0	NA	TTS (NM_025045)	TTS (NM_025045)	269	NM_013356	23539		NM_013356	ENSG00000100156	SLC16A8	MCT3|REMP	solute carrier family 16 member 8	protein-coding
33235	chr10	114172201	114173100	+	0	NA	intron (NM_018017, intron 1 of 15)	intron (NM_018017, intron 1 of 15)	1529	NR_031747	100302224		NR_031747	ENSG00000284442	MIR2110	hsa-mir-2110|mir-2110	microRNA 2110	ncRNA
178222	chr4	142702721	142702980	+	0	NA	intron (NM_001385336, intron 2 of 26)	intron (NM_001385336, intron 2 of 26)	-142095	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
11171	chr1	87151701	87152300	+	0	NA	intron (NR_026989, intron 2 of 2)	intron (NR_026989, intron 2 of 2)	20074	NR_026985	339524		NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
15179	chr1	149123971	149124550	+	0	NA	Intergenic	Intergenic	-41949	NM_001037675	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
4310	chr1	20255521	20255930	+	0	NA	Intergenic	MIRb|SINE|MIR	12630	NR_147205	105376827		NR_147205	ENSG00000228105	LINC01757	-	long intergenic non-protein coding RNA 1757	ncRNA
85124	chr16	34584751	34585200	+	0	NA	Intergenic	Intergenic	-203495	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
14146	chr1	121080351	121080650	+	0	NA	intron (NR_160941, intron 2 of 2)	MER41B|LTR|ERV1	-6845	NR_164759	2210		NM_001004340	ENSG00000291135	FCGR1BP	CD34|CD64b|FCG1|FCGR1|FCGR1B|FcRI|FcgammaRIa|IGFR1|IGFRB	Fc gamma receptor Ib, pseudogene	pseudo
183507	chr5	79516051	79516400	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2091	NM_004272	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
179932	chr5	764171	764530	+	0	NA	intron (NM_001351303, intron 4 of 13)	LTR12C|LTR|ERV1	20379	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
59116	chr13	21297791	21298800	+	0	NA	promoter-TSS (NM_001365454)	promoter-TSS (NM_001365454)	170	NR_046461	650794		NR_038939	ENSG00000291046	MIPEPP3	-	mitochondrial intermediate peptidase pseudogene 3	pseudo
1635	chr1	3774271	3775030	+	0	NA	intron (NM_001288583, intron 2 of 3)	intron (NM_001288583, intron 2 of 3)	1901	NM_001163724	388588		NM_001163724	ENSG00000235169	SMIM1	Vel	small integral membrane protein 1 (Vel blood group)	protein-coding
48530	chr12	10196151	10196730	+	0	NA	Intergenic	Intergenic	-16437	NM_001363598	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
60889	chr13	46140901	46141350	+	0	NA	intron (NM_002298, intron 13 of 15)	L1MEc|LINE|L1	-36049	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
79786	chr16	1383351	1384250	+	0	NA	intron (NM_001372107, intron 10 of 14)	intron (NM_001372107, intron 10 of 14)	-4148	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
114046	chr19	10968721	10969280	+	0	NA	intron (NM_001374457, intron 1 of 33)	intron (NM_001374457, intron 1 of 33)	7970	NM_001128849	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
6391	chr1	27914001	27915450	+	0	NA	promoter-TSS (NM_001297558)	promoter-TSS (NM_001297558)	72	NM_001355129	6118		NM_002946	ENSG00000117748	RPA2	REPA2|RP-A p32|RP-A p34|RPA32	replication protein A2	protein-coding
228799	chr9	111894451	111894850	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2164	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
50924	chr12	49336951	49338580	+	0	NA	promoter-TSS (NM_001008223)	promoter-TSS (NM_001008223)	-577	NM_001008223	338761		NM_001008223	ENSG00000186897	C1QL4	C1QTNF11|CTRP11	complement C1q like 4	protein-coding
199717	chr6	125363421	125363680	+	0	NA	Intergenic	CpG	-61583	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
125665	chr2	20066351	20066530	+	0	NA	Intergenic	Intergenic	-14812	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
11878	chr1	93147551	93148400	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	32438	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
167410	chr3	129001851	129002600	+	0	NA	promoter-TSS (NM_001348522)	promoter-TSS (NM_001348522)	27	NM_001348520	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
196664	chr6	44384701	44384980	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2866	NM_001253	988		NM_001253	ENSG00000096401	CDC5L	CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1	cell division cycle 5 like	protein-coding
111625	chr19	4121921	4122580	+	0	NA	intron (NM_030662, intron 1 of 10)	intron (NM_030662, intron 1 of 10)	1872	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
83381	chr16	26593821	26594080	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-472977	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
63497	chr13	114213401	114214300	+	0	NA	Intergenic	Intergenic	-20995	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
118428	chr19	35797351	35797450	+	0	NA	intron (NR_104176, intron 1 of 7)	intron (NR_104176, intron 1 of 7)	509	NR_104176	644050		NR_104176	ENSG00000293484	LINC01529	-	long intergenic non-protein coding RNA 1529	ncRNA
98584	chr17	47729501	47729980	+	0	NA	Intergenic	Intergenic	-3496	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
209966	chr7	92691551	92692200	+	0	NA	intron (NM_001145306, intron 4 of 7)	intron (NM_001145306, intron 4 of 7)	-101485	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
69777	chr14	99177001	99177550	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	94922	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
157162	chr22	42893601	42894250	+	0	NA	intron (NM_001349974, intron 1 of 9)	L2b|LINE|L2	-36652	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
193027	chr6	28399071	28400030	+	0	NA	promoter-TSS (NM_001368124)	promoter-TSS (NM_001368124)	197	NM_001163391	9753		NM_014724	ENSG00000158691	ZSCAN12	ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2	zinc finger and SCAN domain containing 12	protein-coding
40579	chr11	64361351	64361450	+	0	NA	intron (NM_003942, intron 5 of 16)	intron (NM_003942, intron 5 of 16)	2238	NM_003942	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
171923	chr4	865421	865680	+	0	NA	intron (NM_001318134, intron 19 of 24)	intron (NM_001318134, intron 19 of 24)	-39421	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
158900	chr3	9942621	9942880	+	0	NA	intron (NM_001374319, intron 7 of 9)	intron (NM_001374319, intron 7 of 9)	-4654	NR_046734	100874032		NR_046734	ENSG00000230082	PRRT3-AS1	-	PRRT3 antisense RNA 1	ncRNA
182934	chr5	70780851	70781150	+	0	NA	intron (NR_146391, intron 3 of 10).3	THE1B-int|LTR|ERVL-MaLR	-1914	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
26517	chr10	21278771	21279000	+	0	NA	intron (NM_001377327, intron 1 of 8)	intron (NM_001377327, intron 1 of 8)	14165	NM_001377327	10529		NM_006393	ENSG00000078114	NEBL	C10orf113|LASP2|LNEBL|bA165O3.1	nebulette	protein-coding
10221	chr1	62528021	62528300	+	0	NA	exon (NM_001272000, exon 30 of 49)	exon (NM_001272000, exon 30 of 49)	-69360	NM_014495	27329		NM_014495	ENSG00000132855	ANGPTL3	ANG-5|ANGPT5|ANL3|FHBL2	angiopoietin like 3	protein-coding
172608	chr4	2504201	2505100	+	0	NA	intron (NM_001185009, intron 5 of 8)	AluYh3|SINE|Alu	-30725	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
126066	chr2	25742301	25742500	+	0	NA	exon (NM_001369346, exon 11 of 11)	exon (NM_001369346, exon 11 of 11)	52291	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
44492	chr11	105107451	105107750	+	0	NA	Intergenic	LTR8|LTR|ERV1	-6169	NM_001007232	440068		NM_001007232		CARD17P	CARD17|INCA	caspase recruitment domain family member 17, pseudogene	pseudo
175761	chr4	77767471	77767780	+	0	NA	intron (NM_144571, intron 4 of 11)	L1ME3E|LINE|L1	51439	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
62472	chr13	99375121	99376750	+	0	NA	intron (NR_026644, intron 8 of 8)	AluJb|SINE|Alu	19804	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
163574	chr3	51944451	51945080	+	0	NA	intron (NM_001003931, intron 4 of 10)	intron (NM_001003931, intron 4 of 10)	2402	NM_001370240	10039		NM_005485	ENSG00000041880	PARP3	ADPRT3|ADPRTL2|ADPRTL3|ARTD3|IRT1|PADPRT-3	poly(ADP-ribose) polymerase family member 3	protein-coding
130329	chr2	84982051	84982350	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	11039	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
137741	chr2	197839401	197839600	+	0	NA	intron (NM_006226, intron 1 of 5)	MER1B|DNA|hAT-Charlie	34907	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
200327	chr6	133893951	133894250	+	0	NA	3' UTR (NM_198392, exon 3 of 3)	3' UTR (NM_198392, exon 3 of 3)	4987	NM_198392	6943		NM_003206	ENSG00000118526	TCF21	POD1|bHLHa23	transcription factor 21	protein-coding
89860	chr16	89616601	89617450	+	0	NA	intron (NM_001128141, intron 1 of 10)	intron (NM_001128141, intron 1 of 10)	-3572	NM_004413	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
68008	chr14	75063051	75064250	+	0	NA	intron (NM_001302617, intron 1 of 2)	intron (NM_001302617, intron 1 of 2)	374	NM_001302616	97		NM_001107	ENSG00000119640	ACYP1	ACYPE	acylphosphatase 1	protein-coding
194941	chr6	35254571	35254930	+	0	NA	Intergenic	AluSq|SINE|Alu	-4985	NM_003427	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
115854	chr19	16539051	16539780	+	0	NA	intron (NM_006387, intron 2 of 16)	AluY|SINE|Alu	3022	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
200243	chr6	131950251	131951050	+	0	NA	intron (NM_001901, intron 2 of 4)	intron (NM_001901, intron 2 of 4)	722	NM_001901	1490		NM_001901	ENSG00000118523	CCN2	CTGF|HCS24|IBP-8|IGFBP8|NOV2	cellular communication network factor 2	protein-coding
125801	chr2	24021401	24021700	+	0	NA	intron (NM_001346880, intron 6 of 13)	intron (NM_001346880, intron 6 of 13)	11465	NM_001346880	388931		NM_001080473	ENSG00000205639	MFSD2B	SLC59A2	MFSD2 lysolipid transporter B, sphingolipid	protein-coding
148651	chr21	6107021	6107380	+	0	NA	Intergenic	Intergenic	-3931	NM_001320643	102724428		NM_001320643	ENSG00000275993	LOC102724428	SIK|SIK-1|SIK1|SIK1B|SNF1LK	salt inducible kinase 1B (putative)	protein-coding
199689	chr6	122848171	122848330	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	58992	NM_006714	10924		NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	sphingomyelin phosphodiesterase acid like 3A	protein-coding
136151	chr2	174332271	174333050	+	0	NA	Intergenic	Intergenic	-2294	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
169780	chr3	172717421	172717880	+	0	NA	Intergenic	Intergenic	-6583	NM_020792	57552		NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
84464	chr16	30456021	30456280	+	0	NA	Intergenic	AluJo|SINE|Alu	-10276	NM_012248	22928		NM_012248	ENSG00000179918	SEPHS2	SPS2	selenophosphate synthetase 2	protein-coding
158650	chr3	5005621	5005900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-25799	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
197487	chr6	75605401	75605700	+	0	NA	intron (NM_015571, intron 1 of 23)	L2a|LINE|L2	3670	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
54024	chr12	75505621	75506180	+	0	NA	intron (NM_007043, intron 5 of 9)	intron (NM_007043, intron 5 of 9)	5709	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
166583	chr3	118884701	118885130	+	0	NA	Intergenic	Intergenic	-58161	NR_046230	100506765		NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
172958	chr4	3765671	3766300	+	0	NA	promoter-TSS (NM_000683)	promoter-TSS (NM_000683)	-400	NM_000683	152		NM_000683	ENSG00000184160	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
91827	chr17	7179171	7179330	+	0	NA	5' UTR (NM_001197216, exon 1 of 8)	5' UTR (NM_001197216, exon 1 of 8)	120	NM_001671	432		NM_001671	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
17285	chr1	156431471	156431900	+	0	NA	Intergenic	Intergenic	-2137	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
89895	chr16	89685401	89685600	+	0	NA	Intergenic	Intergenic	-1189	NR_027703	8558		NM_003674	ENSG00000185324	CDK10	ALSAS|PISSLRE	cyclin dependent kinase 10	protein-coding
89401	chr16	88820351	88820950	+	0	NA	intron (NM_000512, intron 12 of 13)	G-rich|Low_complexity|Low_complexity	-8722	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
134827	chr2	148554351	148554450	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-90351	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
221697	chr8	126991721	126992000	+	0	NA	Intergenic	MIR3|SINE|MIR	-21294	NR_045262	100750225		NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1|PiHL	prostate cancer associated transcript 1	ncRNA
204829	chr7	5698821	5699080	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	12960	NR_106934	102466203		NR_106934	ENSG00000283419	MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
238402	chrX	150545871	150546030	+	0	NA	Intergenic	Intergenic	-22671	NM_001376906	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
175490	chr4	73238401	73238600	+	0	NA	intron (NM_032217, intron 1 of 33)	intron (NM_032217, intron 1 of 33)	-15443	NM_001286771	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
196763	chr6	45445551	45446050	+	0	NA	intron (NM_001278478, intron 3 of 5)	intron (NM_001278478, intron 3 of 5)	23525	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
30662	chr10	80486101	80486680	+	0	NA	intron (NM_001351272, intron 2 of 9)	intron (NM_001351272, intron 2 of 9)	18149	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
199560	chr6	118889101	118889500	+	0	NA	intron (NM_001378357, intron 8 of 13)	intron (NM_001378357, intron 8 of 13)	-4852	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
191296	chr6	6634471	6634630	+	0	NA	intron (NM_004271, intron 3 of 4)	intron (NM_004271, intron 3 of 4)	-11724	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
148901	chr21	8470001	8470550	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	29129	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
120638	chr19	45069651	45069750	+	0	NA	intron (NM_001278439, intron 17 of 19)	intron (NM_001278439, intron 17 of 19)	-5927	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
126098	chr2	25865221	25865680	+	0	NA	intron (NM_018263, intron 1 of 11)	AluSz6|SINE|Alu	13037	NM_018263	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
31190	chr10	91206371	91207050	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-13441	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
200570	chr6	136284751	136285350	+	0	NA	intron (NM_001301038, intron 1 of 12)	L2a|LINE|L2	4796	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
36979	chr11	11844921	11845580	+	0	NA	intron (NM_001372101, intron 1 of 26)	intron (NM_001372101, intron 1 of 26)	3278	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
76106	chr15	72502971	72503480	+	0	NA	intron (NM_005744, intron 1 of 13)	LTR67B|LTR|ERVL	28895	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
132325	chr2	105373751	105374330	+	0	NA	intron (NM_201555, intron 4 of 7)	intron (NM_201555, intron 4 of 7)	25011	NM_001318895	2274		NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
110071	chr19	1499401	1499800	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	8419	NM_138393	92840		NM_138393	ENSG00000115255	REEP6	C19orf32|DP1L1|REEP6.1|REEP6.2|RP77|TB1|TB2L1|Yip2f	receptor accessory protein 6	protein-coding
43183	chr11	75403051	75403630	+	0	NA	intron (NM_001005, intron 4 of 6)	MIRb|SINE|MIR	-1081	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
50368	chr12	47214801	47215030	+	0	NA	intron (NR_026544, intron 2 of 2)	AluSx|SINE|Alu	1528	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
109148	chr18	80257671	80258730	+	0	NA	Intergenic	LTR13|LTR|ERVK	-10686	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
130023	chr2	74267121	74267680	+	0	NA	intron (NM_021196, intron 3 of 25)	L1ME3G|LINE|L1	47625	NM_021196	57835		NM_021196	ENSG00000188687	SLC4A5	NBC4|NBCe2	solute carrier family 4 member 5	protein-coding
25243	chr10	6045071	6045600	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	17032	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
238174	chrX	136869471	136872450	+	0	NA	intron (NM_001164803, intron 7 of 7)	AluSq2|SINE|Alu	8311	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
96209	chr17	39766371	39766730	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	11675	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
182078	chr5	55985301	55985500	+	0	NA	intron (NR_157112, intron 1 of 17)	AluSx|SINE|Alu	9563	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
219477	chr8	73673051	73673230	+	0	NA	exon (NM_014393, exon 5 of 12)	exon (NM_014393, exon 5 of 12)	73700	NM_001164380	27067		NM_014393	ENSG00000040341	STAU2	39K2|39K3	staufen double-stranded RNA binding protein 2	protein-coding
101173	chr17	65138701	65139130	+	0	NA	intron (NM_001165933, intron 1 of 16)	intron (NM_001165933, intron 1 of 16)	1545	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
22360	chr1	214869321	214869580	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-136092	NM_001017424	3776		NM_014217	ENSG00000082482	KCNK2	K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e	potassium two pore domain channel subfamily K member 2	protein-coding
12537	chr1	108586001	108586480	+	0	NA	intron (NM_001010883, intron 1 of 10)	intron (NM_001010883, intron 1 of 10)	26140	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
105056	chr17	82077051	82078330	+	0	NA	TTS (NM_004104)	TTS (NM_004104)	-11886	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
37548	chr11	18701701	18702180	+	0	NA	exon (NM_153347, exon 3 of 3)	exon (NM_153347, exon 3 of 3)	3161	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
4709	chr1	23168301	23169250	+	0	NA	promoter-TSS (NM_001142546)	promoter-TSS (NM_001142546)	81	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
73755	chr15	45430071	45430680	+	0	NA	promoter-TSS (NM_032413)	promoter-TSS (NM_032413)	-235	NM_032413	84419		NM_032413	ENSG00000166920	C15orf48	COXFA4L3|FOAP-11|MIR147BHG|MISTRAV|MOCCI|NMES1	chromosome 15 open reading frame 48	protein-coding
31165	chr10	91007851	91007950	+	0	NA	Intergenic	Intergenic	-25266	NR_134319	105378430		NR_134319		LOC105378430	-	uncharacterized LOC105378430	ncRNA
229005	chr9	113593801	113594100	+	0	NA	promoter-TSS (NM_001276262)	promoter-TSS (NM_001276262)	30	NM_144489	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
217679	chr8	30109801	30110400	+	0	NA	intron (NM_001128208, intron 3 of 3)	intron (NM_001128208, intron 3 of 3)	14692	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
141937	chr20	1264021	1264380	+	0	NA	Intergenic	AluJo|SINE|Alu	-2094	NM_014723	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
148378	chr20	63892521	63892780	+	0	NA	Intergenic	L2c|LINE|L2	-2476	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
191268	chr6	6045371	6045530	+	0	NA	Intergenic	Intergenic	-37845	NM_001278710	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
24089	chr1	235349171	235349550	+	0	NA	Intergenic	AluYa5|SINE|Alu	-18000	NM_001287802	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
22395	chr1	219235771	219236530	+	0	NA	Intergenic	Intergenic	61181	NM_001300772	127018		NM_138794	ENSG00000143353	LYPLAL1	Q96AV0	lysophospholipase like 1	protein-coding
223858	chr9	106471	106630	+	0	NA	Intergenic	SATR1|Satellite|Satellite	11867	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
72068	chr15	28888571	28888800	+	0	NA	intron (NM_001353788, intron 1 of 14).2	intron (NM_001353788, intron 1 of 14).2	2711	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
29147	chr10	68628551	68628980	+	0	NA	intron (NM_030625, intron 3 of 11)	intron (NM_030625, intron 3 of 11)	68428	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
134545	chr2	143728371	143729350	+	0	NA	intron (NM_018460, intron 13 of 13)	intron (NM_018460, intron 13 of 13)	-208207	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
2466	chr1	9653401	9654700	+	0	NA	intron (NR_027045, intron 1 of 1)	FRAM|SINE|Alu	536	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
185126	chr5	119291571	119292150	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	23101	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
52230	chr12	54394071	54394880	+	0	NA	TTS (NM_002205)	TTS (NM_002205)	-3177	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
2381	chr1	9418871	9419230	+	0	NA	Intergenic	Intergenic	9866	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
190976	chr6	2973251	2974050	+	0	NA	Intergenic	L3b|LINE|CR1	-1857	NM_001297700	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
139850	chr2	230472521	230472950	+	0	NA	intron (NM_001080391, intron 15 of 28)	intron (NM_001080391, intron 15 of 28)	55979	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
140148	chr2	231600651	231601100	+	0	NA	Intergenic	Intergenic	8011	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
116882	chr19	18668671	18669180	+	0	NA	exon (NM_001345982, exon 4 of 4)	exon (NM_001345982, exon 4 of 4)	-14755	NM_015321	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
82413	chr16	16235521	16235980	+	0	NA	intron (NM_173614, intron 1 of 30)	AluJo|SINE|Alu	3155	NM_173614	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
20238	chr1	193406721	193407250	+	0	NA	Intergenic	Intergenic	102240	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
106905	chr18	25727371	25727550	+	0	NA	Intergenic	Intergenic	363153	NM_001007559	6760		NM_005637	ENSG00000141380	SS18	SMARCL1|SSXT|SYT	SS18 subunit of BAF chromatin remodeling complex	protein-coding
104844	chr17	81838871	81839030	+	0	NA	Intergenic	Intergenic	-3900	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
153707	chr22	29279471	29279630	+	0	NA	intron (NM_001163286, intron 5 of 15)	intron (NM_001163286, intron 5 of 15)	11282	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
178197	chr4	142406201	142406580	+	0	NA	promoter-TSS (NM_001385351)	promoter-TSS (NM_001385351)	-531	NR_169599	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
43728	chr11	86054301	86055030	+	0	NA	intron (NM_001206947, intron 1 of 18)	L2c|LINE|L2	14419	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
56546	chr12	116880751	116881430	+	0	NA	exon (NM_003806, exon 1 of 2)	exon (NM_003806, exon 1 of 2)	351	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
18159	chr1	160776851	160776950	+	0	NA	Intergenic	Intergenic	-19274	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
230344	chr9	128020751	128021350	+	0	NA	Intergenic	L2a|LINE|L2	-40061	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
193249	chr6	29941801	29943840	+	0	NA	exon (NM_002116, exon 2 of 8)	exon (NM_002116, exon 2 of 8)	288	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
106655	chr18	23012371	23012630	+	0	NA	intron (NM_203292, intron 16 of 17)	Tigger1|DNA|TcMar-Tigger	78624	NM_203291	5932		NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JAWAD|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding
57033	chr12	120708701	120709350	+	0	NA	Intergenic	L2c|LINE|L2	-1433	NM_001080533	84747		NM_032661	ENSG00000175970	UNC119B	POC7B	unc-119 lipid binding chaperone B	protein-coding
209998	chr7	92904271	92905000	+	0	NA	intron (NR_110087, intron 2 of 2)	intron (NR_110087, intron 2 of 2)	-68062	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
50677	chr12	48853141	48854080	+	0	NA	Intergenic	MIRb|SINE|MIR	-1447	NM_004818	9416		NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
183886	chr5	87301951	87302250	+	0	NA	intron (NM_022650, intron 1 of 24)	L1ME3A|LINE|L1	21528	NR_130929	644285		NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
20989	chr1	202656121	202656380	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	-12797	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
95098	chr17	34580001	34580480	+	0	NA	promoter-TSS (NR_160787)	promoter-TSS (NR_160787)	658	NM_001304438	124842		NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding
182162	chr5	56605271	56605630	+	0	NA	intron (NR_161255, intron 1 of 5)	intron (NR_161255, intron 1 of 5)	806	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
67262	chr14	69130521	69130780	+	0	NA	intron (NM_001284208, intron 1 of 6)	L1ME4b|LINE|L1	21949	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
129539	chr2	69755551	69755650	+	0	NA	intron (NM_001320702, intron 1 of 12)	AluJb|SINE|Alu	13466	NM_001320700	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
89529	chr16	89185201	89185800	+	0	NA	intron (NM_004933, intron 5 of 13)	intron (NM_004933, intron 5 of 13)	13752	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
92683	chr17	13017251	13018540	+	0	NA	exon (NM_001165962, exon 1 of 23)	exon (NM_001165962, exon 1 of 23)	132	NM_018127	60528		NM_018127	ENSG00000006744	ELAC2	COXPD17|ELC2|HPC2	elaC ribonuclease Z 2	protein-coding
124708	chr2	3590351	3590450	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-4432	NM_001255983	78989		NM_024027	ENSG00000118004	COLEC11	3MC2|CL-11|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
19574	chr1	179225621	179225980	+	0	NA	intron (NM_007314, intron 1 of 11)	AluY|SINE|Alu	3877	NM_001168238	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
66799	chr14	64719501	64720100	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	15376	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
101720	chr17	68533971	68534480	+	0	NA	TTS (NM_017565)	TTS (NM_017565)	18831	NM_001276290	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
17496	chr1	156730721	156731450	+	0	NA	intron (NM_015997, intron 1 of 7)	L2a|LINE|L2	-2319	NM_001370150	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
18357	chr1	161229151	161229450	+	0	NA	TTS (NM_001077473)	TTS (NM_001077473)	2114	NR_049819	100847090		NR_049819	ENSG00000284035	MIR5187	mir-5187	microRNA 5187	ncRNA
174868	chr4	48727821	48728150	+	0	NA	intron (NM_015030, intron 1 of 63)	L1MCa|LINE|L1	52294	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
162838	chr3	49280051	49280150	+	0	NA	intron (NM_199443, intron 19 of 20)	AluSz6|SINE|Alu	-2868	NM_198562	375341		NM_198562	ENSG00000188315	C3orf62	MAPS	chromosome 3 open reading frame 62	protein-coding
203943	chr7	1545971	1546130	+	0	NA	3' UTR (NM_001097620, exon 9 of 9)	3' UTR (NM_001097620, exon 9 of 9)	10155	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
16293	chr1	154166721	154166980	+	0	NA	3' UTR (NM_152263, exon 10 of 10)	3' UTR (NM_152263, exon 10 of 10)	11354	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
95964	chr17	39101151	39101650	+	0	NA	intron (NM_020405, intron 7 of 13)	intron (NM_020405, intron 7 of 13)	44381	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
106532	chr18	21195171	21195480	+	0	NA	Intergenic	Intergenic	-46917	NM_001142966	80000		NM_024935	ENSG00000141449	GREB1L	C18orf6|DFNA80|KIAA1772|RHDA3	GREB1 like retinoic acid receptor coactivator	protein-coding
145025	chr20	38035371	38036000	+	0	NA	intron (NM_021215, intron 1 of 6)	intron (NM_021215, intron 1 of 6)	1939	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
144423	chr20	35410401	35410850	+	0	NA	intron (NM_199487, intron 1 of 8)	AluSx|SINE|Alu	1348	NM_018244	55245		NM_018244	ENSG00000101019	UQCC1	BFZB|C20orf44|CBP3|UQCC	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding
190588	chr5	181097751	181098380	+	0	NA	Intergenic	CpG	27239	NM_001258283	26693		NM_001258283	ENSG00000185372	OR2V1	OR2V1P|OST265	olfactory receptor family 2 subfamily V member 1	protein-coding
54394	chr12	89935851	89936030	+	0	NA	Intergenic	Intergenic	-11753	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
68173	chr14	75983871	75984230	+	0	NA	Intergenic	L2a|LINE|L2	-1039	NM_001329939	7043		NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
214972	chr7	152026751	152026850	+	0	NA	intron (NM_001304514, intron 1 of 10)	MER4A|LTR|ERV1	1126	NM_001371461	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
176189	chr4	83457201	83457400	+	0	NA	intron (NM_001297770, intron 2 of 3)	intron (NM_001297770, intron 2 of 3)	1242	NM_016067	51023		NM_016067	ENSG00000163319	MRPS18C	CGI-134|MRP-S18-1|MRP-S18-c|MRPS18-1|S18mt-c|bS18m|mrps18-c	mitochondrial ribosomal protein S18C	protein-coding
81602	chr16	10497521	10498200	+	0	NA	Intergenic	MER54A|LTR|ERVL	30338	NR_149081	106144584		NR_149081	ENSG00000260468	LINC01290	-	long intergenic non-protein coding RNA 1290	ncRNA
160768	chr3	32689621	32690030	+	0	NA	intron (NR_046352, intron 1 of 16)	AluJr|SINE|Alu	4637	NM_015442	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
238620	chrX	153950201	153950600	+	0	NA	exon (NM_005334, exon 24 of 26)	exon (NM_005334, exon 24 of 26)	-5757	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
29349	chr10	69506701	69508250	+	0	NA	non-coding (NR_147091, exon 8 of 8)	non-coding (NR_147091, exon 8 of 8)	56008	NR_147091	23555		NM_012339	ENSG00000099282	TSPAN15	2700063A19Rik|NET-7|NET7|TM4SF15	tetraspanin 15	protein-coding
138126	chr2	202295771	202296450	+	0	NA	intron (NM_015934, intron 10 of 14)	intron (NM_015934, intron 10 of 14)	3059	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
2851	chr1	11272271	11274250	+	0	NA	promoter-TSS (NM_001330349)	promoter-TSS (NM_001330349)	62	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
146626	chr20	50178921	50180250	+	0	NA	Intergenic	Intergenic	7015	NR_109943	101927541		NR_109943	ENSG00000231742	LINC01273	-	long intergenic non-protein coding RNA 1273	ncRNA
179164	chr4	169791551	169792080	+	0	NA	Intergenic	Intergenic	-33871	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
47142	chr12	750951	751700	+	0	NA	Intergenic	Intergenic	-1254	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
112220	chr19	5701801	5702500	+	0	NA	intron (NR_076392, intron 9 of 18)	SVA_D|Retroposon|SVA	11855	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
46005	chr11	121572221	121572700	+	0	NA	intron (NM_003105, intron 23 of 47)	intron (NM_003105, intron 23 of 47)	-90671	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
72994	chr15	40600551	40601300	+	0	NA	intron (NM_144508, intron 1 of 25)	MamRep137|DNA|TcMar-Tigger	6676	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
67591	chr14	72401751	72402130	+	0	NA	intron (NM_001370288, intron 3 of 16)	LTR33|LTR|ERVL	-114880	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
114079	chr19	11102021	11103080	+	0	NA	intron (NM_001195799, intron 2 of 16)	AluSx1|SINE|Alu	-10924	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
61840	chr13	76769321	76769580	+	0	NA	Intergenic	Intergenic	116955	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
165735	chr3	105518451	105519080	+	0	NA	intron (NM_001243281, intron 1 of 13)	intron (NM_001243281, intron 1 of 13)	151856	NM_001627	214		NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
103193	chr17	77458111	77460950	+	0	NA	intron (NM_001293698, intron 1 of 9)	MSTB|LTR|ERVL-MaLR	5503	NM_001293698	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
157934	chr22	49786801	49788000	+	0	NA	exon (NM_001349942, exon 8 of 13)	exon (NM_001349942, exon 8 of 13)	36931	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
192945	chr6	27795451	27796280	+	0	NA	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	12064	NM_003519	8340		NM_003519	ENSG00000185130	H2BC13	H2B/c|H2BFC|HIST1H2BL|dJ97D16.4	H2B clustered histone 13	protein-coding
33313	chr10	114874871	114875250	+	0	NA	intron (NM_001135051, intron 16 of 16)	intron (NM_001135051, intron 16 of 16)	53280	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
155246	chr22	37950401	37950600	+	0	NA	intron (NM_001207062, intron 2 of 5)	AluJr|SINE|Alu	3101	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
73275	chr15	41850901	41851230	+	0	NA	exon (NM_016642, exon 65 of 68)	exon (NM_016642, exon 65 of 68)	12252	NM_001114633	100137049		NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2 group IVB	protein-coding
169852	chr3	177191051	177191750	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	5078	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
165869	chr3	106033371	106034030	+	0	NA	Intergenic	Intergenic	-164299	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
125307	chr2	10659771	10660350	+	0	NA	intron (NM_024894, intron 9 of 20)	intron (NM_024894, intron 9 of 20)	29915	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
223677	chr8	144401051	144401900	+	0	NA	exon (NM_013291, exon 4 of 38)	exon (NM_013291, exon 4 of 38)	-1130	NR_106908	102466749		NR_106908	ENSG00000283770	MIR6849	hsa-mir-6849	microRNA 6849	ncRNA
32481	chr10	102667751	102668880	+	0	NA	Intergenic	Intergenic	23820	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
193276	chr6	29976471	29977230	+	0	NA	intron (NR_028032, intron 1 of 2)	CpG	1735	NR_028032	10255		NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9	ncRNA
21940	chr1	207870421	207870880	+	0	NA	Intergenic	L2|LINE|L2	40475	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
15668	chr1	150924551	150924850	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1563	NM_001366417	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
9260	chr1	46245971	46246130	+	0	NA	Intergenic	AluY|SINE|Alu	-1638	NM_001370766	8438		NM_003579	ENSG00000085999	RAD54L	HR54|RAD54A|hHR54|hRAD54	RAD54 like	protein-coding
226619	chr9	73173951	73174850	+	0	NA	Intergenic	L1MC2|LINE|L1	22535	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
42350	chr11	68533771	68534130	+	0	NA	intron (NM_001352348, intron 3 of 24)	intron (NM_001352348, intron 3 of 24)	73198	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
43830	chr11	86818351	86818930	+	0	NA	intron (NR_120591, intron 1 of 4)	intron (NR_120591, intron 1 of 4)	18098	NM_001293179	11098		NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	serine protease 23	protein-coding
132541	chr2	106183201	106183600	+	0	NA	intron (NR_165308, intron 1 of 14)	intron (NR_165308, intron 1 of 14)	10901	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
103342	chr17	78028101	78028430	+	0	NA	intron (NM_001142640, intron 2 of 21)	L2c|LINE|L2	24028	NM_018996	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
82849	chr16	21514871	21515030	+	0	NA	Intergenic	AluSp|SINE|Alu	5494	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
200821	chr6	137949751	137950350	+	0	NA	Intergenic	Intergenic	-4250	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
137412	chr2	196269651	196269950	+	0	NA	intron (NM_001348768, intron 17 of 28)	intron (NM_001348768, intron 17 of 28)	9776	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
157078	chr22	42608571	42608950	+	0	NA	intron (NM_001278657, intron 1 of 8)	intron (NM_001278657, intron 1 of 8)	6123	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
134321	chr2	136056071	136056580	+	0	NA	Intergenic	MIR|SINE|MIR	59910	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
7922	chr1	37490351	37490650	+	0	NA	non-coding (NR_073090, exon 9 of 9)	non-coding (NR_073090, exon 9 of 9)	10270	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
62734	chr13	106531801	106532200	+	0	NA	intron (NM_004093, intron 1 of 4)	intron (NM_004093, intron 1 of 4)	3662	NM_001372057	1948		NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5|ephrin-B2	ephrin B2	protein-coding
162467	chr3	48505801	48506330	+	0	NA	Intergenic	AluSx|SINE|Alu	-1239	NM_001272066	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
209612	chr7	77692271	77692430	+	0	NA	intron (NR_134251, intron 1 of 3)	intron (NR_134251, intron 1 of 3)	3915	NR_134254	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
28743	chr10	61985471	61985630	+	0	NA	intron (NM_032199, intron 3 of 9)	L1MB8|LINE|L1	-63807	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
217990	chr8	38381531	38382700	+	0	NA	5' UTR (NM_023034, exon 1 of 24)	5' UTR (NM_023034, exon 1 of 24)	156	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
174437	chr4	39637621	39639630	+	0	NA	intron (NM_001317896, intron 1 of 5)	CpG	240	NM_001317896	201895		NM_174921	ENSG00000163683	SMIM14	C4orf34	small integral membrane protein 14	protein-coding
34505	chr10	132569851	132569950	+	0	NA	intron (NM_005539, intron 1 of 15)	AluSx|SINE|Alu	32113	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
95328	chr17	35742401	35742600	+	0	NA	3' UTR (NM_033315, exon 4 of 4)	3' UTR (NM_033315, exon 4 of 4)	10739	NM_139285	246176		NM_139285	ENSG00000270765	GAS2L2	CILD41|GAR17	growth arrest specific 2 like 2	protein-coding
39997	chr11	62634551	62635130	+	0	NA	exon (NM_001278194, exon 4 of 23)	exon (NM_001278194, exon 4 of 23)	5378	NM_001329224	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
88112	chr16	81555701	81556100	+	0	NA	intron (NM_030629, intron 1 of 20)	MIRb|SINE|MIR	21998	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
3941	chr1	18452571	18452800	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-28245	NM_152375	127707		NM_152375	ENSG00000179023	KLHDC7A	-	kelch domain containing 7A	protein-coding
161594	chr3	43060421	43060930	+	0	NA	Intergenic	Intergenic	45404	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
114373	chr19	12496571	12496730	+	0	NA	Intergenic	AluJb|SINE|Alu	-11834	NM_152601	163051		NM_152601	ENSG00000242852	ZNF709	-	zinc finger protein 709	protein-coding
93884	chr17	21126601	21128400	+	0	NA	intron (NM_015510, intron 1 of 6)	CpG	572	NM_015510	25979		NM_015510	ENSG00000109016	DHRS7B	CGI-93|SDR32C1	dehydrogenase/reductase 7B	protein-coding
190949	chr6	2904171	2904330	+	0	NA	promoter-TSS (NM_004155)	promoter-TSS (NM_004155)	-941	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
65153	chr14	45250951	45251430	+	0	NA	intron (NM_018353, intron 1 of 16)	Tigger3a|DNA|TcMar-Tigger	2012	NM_018353	55320		NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
80498	chr16	2717471	2718730	+	0	NA	intron (NM_001318395, intron 1 of 4)	intron (NM_001318395, intron 1 of 4)	2124	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
55905	chr12	109730371	109730830	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	16775	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
4465	chr1	21347571	21347730	+	0	NA	Intergenic	Intergenic	-2146	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
119553	chr19	40604801	40606530	+	0	NA	intron (NM_001042544, intron 6 of 32)	CpG-14531	4296	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
116750	chr19	18478801	18479300	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	-40917	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
94300	chr17	28734751	28735050	+	0	NA	exon (NM_178170, exon 3 of 15)	exon (NM_178170, exon 3 of 15)	6112	NM_178170	284086		NM_178170	ENSG00000160602	NEK8	JCK|NEK12A|NPHP9|RHPD2	NIMA related kinase 8	protein-coding
217646	chr8	30072501	30073400	+	0	NA	intron (NM_001284239, intron 1 of 4)	intron (NM_001284239, intron 1 of 4)	10114	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
139782	chr2	230227101	230227850	+	0	NA	intron (NM_001278451, intron 1 of 25)	L1MCb|LINE|L1	1739	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
76288	chr15	74135551	74135650	+	0	NA	3' UTR (NM_020851, exon 3 of 3)	3' UTR (NM_020851, exon 3 of 3)	5014	NM_020851	57611		NM_020851	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine rich repeat 2	protein-coding
117140	chr19	19299921	19300180	+	0	NA	intron (NM_172231, intron 7 of 13)	AluSp|SINE|Alu	20459	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
174896	chr4	48962901	48963530	+	0	NA	Intergenic	Intergenic	-23060	NM_025087	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
73622	chr15	44584071	44584630	+	0	NA	exon (NM_001160227, exon 30 of 38)	exon (NM_001160227, exon 30 of 38)	47203	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
79053	chr16	106951	107480	+	0	NA	intron (NM_001243249, intron 5 of 11)	intron (NM_001243249, intron 5 of 11)	28990	NM_001015052	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
80105	chr16	2019071	2021180	+	0	NA	exon (NM_001099456, exon 1 of 2)	exon (NM_001099456, exon 1 of 2)	340	NM_001099456	283869		NM_001099456	ENSG00000183971	NPW	L8|L8C|PPL8|PPNPW	neuropeptide W	protein-coding
69257	chr14	93025051	93025350	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	11774	NM_001363707	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
227463	chr9	90985201	90985400	+	0	NA	Intergenic	Intergenic	89832	NR_033912	100129316		NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
4732	chr1	23365221	23365680	+	0	NA	intron (NM_001370652, intron 2 of 2).2	AluSz|SINE|Alu	2936	NM_030634	80818		NM_030634	ENSG00000125945	ZNF436	ZNF|Zfp46	zinc finger protein 436	protein-coding
76939	chr15	78074571	78074800	+	0	NA	intron (NM_144572, intron 1 of 12)	L1ME3Cz|LINE|L1	2967	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
226787	chr9	76656901	76657500	+	0	NA	intron (NM_001308047, intron 9 of 17)	intron (NM_001308047, intron 9 of 17)	35215	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
22025	chr1	210311151	210312050	+	0	NA	Intergenic	Intergenic	-16652	NM_001170564	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
225231	chr9	34195621	34196400	+	0	NA	intron (NM_001171201, intron 1 of 5)	FLAM_A|SINE|Alu	16967	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
179505	chr4	184668051	184669180	+	0	NA	intron (NR_144312, intron 6 of 14)	L2c|LINE|L2	18877	NM_001345897	201973		NM_152683	ENSG00000164306	PRIMPOL	CCDC111|MYP22|Primpol1	primase and DNA directed polymerase	protein-coding
15377	chr1	150154101	150154500	+	0	NA	intron (NM_016274, intron 2 of 5)	intron (NM_016274, intron 2 of 5)	3714	NM_001304723	51177		NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding
160796	chr3	32975821	32976300	+	0	NA	Intergenic	Intergenic	24416	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
192358	chr6	24644051	24644150	+	0	NA	intron (NM_001350407, intron 1 of 19)	MER6A|DNA|TcMar-Tigger	1921	NM_001168376	9856		NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
215881	chr8	7798921	7799680	+	0	NA	Intergenic	Intergenic	16351	NM_001040705	503614		NM_001040705	ENSG00000198129	DEFB107B	HsT21816	defensin beta 107B	protein-coding
87835	chr16	75644471	75645750	+	0	NA	intron (NM_001130089, intron 1 of 14)	intron (NM_001130089, intron 1 of 14)	2555	NM_001130089	3735		NM_005548	ENSG00000065427	KARS1	CMTRIB|DEAPLE|DFNB89|KARS|KARS2|KRS|LEPID	lysyl-tRNA synthetase 1	protein-coding
55229	chr12	101826821	101827550	+	0	NA	intron (NM_024312, intron 1 of 20)	AluJb|SINE|Alu	3774	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
143939	chr20	32764701	32765380	+	0	NA	intron (NM_175849, intron 1 of 19)	intron (NM_175849, intron 1 of 19)	2655	NM_006892	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
236184	chrX	65609301	65609500	+	0	NA	Intergenic	Intergenic	-56979	NR_033742	83957		NM_032033	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
51221	chr12	50637601	50638180	+	0	NA	intron (NM_173602, intron 2 of 37)	intron (NM_173602, intron 2 of 37)	-126211	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
158607	chr3	4837271	4837630	+	0	NA	intron (NM_002222, intron 57 of 57)	L2b|LINE|L2	69051	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
29641	chr10	71846921	71847380	+	0	NA	intron (NM_002778, intron 1 of 13)	intron (NM_002778, intron 1 of 13)	4101	NM_002778	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
172521	chr4	2285221	2286000	+	0	NA	intron (NM_020972, intron 8 of 12)	intron (NM_020972, intron 8 of 12)	-23501	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
185242	chr5	123424951	123425250	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1258	NM_001375408	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
167829	chr3	133661351	133662500	+	0	NA	promoter-TSS (NM_001363889)	promoter-TSS (NM_001363889)	16	NM_007027	11073		NM_007027	ENSG00000163781	TOPBP1	Dpb11|TOP2BP1	DNA topoisomerase II binding protein 1	protein-coding
97882	chr17	45063421	45063680	+	0	NA	intron (NM_021079, intron 1 of 11)	intron (NM_021079, intron 1 of 11)	2233	NM_021079	4836		NM_021079	ENSG00000136448	NMT1	HsNMT1|NMT	N-myristoyltransferase 1	protein-coding
85748	chr16	56729371	56730630	+	0	NA	promoter-TSS (NM_014669)	promoter-TSS (NM_014669)	-129	NM_014669	9688		NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
233173	chr9	137186101	137186700	+	0	NA	intron (NM_013366, intron 2 of 12)	intron (NM_013366, intron 2 of 12)	2160	NM_013366	29882		NM_013366	ENSG00000176248	ANAPC2	APC2	anaphase promoting complex subunit 2	protein-coding
168240	chr3	141376221	141376480	+	0	NA	intron (NM_001376119, intron 2 of 3)	intron (NM_001376119, intron 2 of 3)	7846	NM_001376113	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
158957	chr3	10203101	10203700	+	0	NA	intron (NM_001570, intron 3 of 12)	intron (NM_001570, intron 3 of 12)	38481	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
106113	chr18	9176251	9176600	+	0	NA	intron (NM_001204056, intron 1 of 11)	AluJb|SINE|Alu	38862	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
154017	chr22	30434051	30434350	+	0	NA	intron (NR_148046, intron 2 of 3)	MIRb|SINE|MIR	1514	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
52954	chr12	57462121	57463680	+	0	NA	intron (NM_001160045, intron 1 of 9)	intron (NM_001160045, intron 1 of 9)	2749	NM_001167609	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
114097	chr19	11120221	11121030	+	0	NA	intron (NM_001195800, intron 12 of 15)	MIRb|SINE|MIR	7151	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
146388	chr20	49289071	49289230	+	0	NA	non-coding (NR_036659, exon 4 of 4)	non-coding (NR_036659, exon 4 of 4)	8467	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
61134	chr13	48573151	48573450	+	0	NA	Intergenic	Intergenic	7601	NR_051983	100129597		NR_051983	ENSG00000233610	LINC00462	-	long intergenic non-protein coding RNA 462	ncRNA
140167	chr2	231620121	231620580	+	0	NA	Intergenic	Intergenic	27486	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
221990	chr8	130004051	130004400	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	4228	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
213121	chr7	131329871	131330030	+	0	NA	intron (NM_001321316, intron 1 of 17)	intron (NM_001321316, intron 1 of 17)	2074	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
174341	chr4	38687371	38688100	+	0	NA	intron (NM_016531, intron 2 of 5)	L3|LINE|CR1	-23107	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
12251	chr1	100441171	100441400	+	0	NA	intron (NM_001319210, intron 6 of 16)	intron (NM_001319210, intron 6 of 16)	88779	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
221646	chr8	125932771	125932930	+	0	NA	intron (NR_038447, intron 3 of 3)	intron (NR_038447, intron 3 of 3)	18347	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
214294	chr7	149089921	149092630	+	0	NA	promoter-TSS (NM_152411)	promoter-TSS (NM_152411)	-557	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
86165	chr16	57764401	57765150	+	0	NA	intron (NR_134678, intron 11 of 18)	intron (NR_134678, intron 11 of 18)	7577	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
191247	chr6	5878871	5879050	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	125084	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
50171	chr12	45984201	45986200	+	0	NA	intron (NM_004719, intron 1 of 14)	L1MC4|LINE|L1	5374	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
204410	chr7	3090471	3090980	+	0	NA	Intergenic	L2c|LINE|L2	-46858	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
121140	chr19	46260801	46261000	+	0	NA	Intergenic	Intergenic	31158	NM_198541	374918		NM_198541	ENSG00000188293	IGFL1	APRG644|UNQ644	IGF like family member 1	protein-coding
118872	chr19	38666801	38667700	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	19601	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
191323	chr6	6928021	6928280	+	0	NA	Intergenic	Intergenic	-179593	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
169919	chr3	177810371	177810530	+	0	NA	Intergenic	Intergenic	-6415	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
151709	chr22	17626421	17626680	+	0	NA	intron (NM_001696, intron 1 of 8)	AluSx|SINE|Alu	2199	NM_001696	529		NM_001696	ENSG00000131100	ATP6V1E1	ARCL2C|ATP6E|ATP6E2|ATP6V1E|P31|Vma4	ATPase H+ transporting V1 subunit E1	protein-coding
139586	chr2	224970501	224970700	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	11827	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
220543	chr8	100700351	100701480	+	0	NA	Intergenic	Tigger4b|DNA|TcMar-Tigger	2109	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
74354	chr15	58640151	58640250	+	0	NA	intron (NM_001320570, intron 7 of 14)	intron (NM_001320570, intron 7 of 14)	53407	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
11924	chr1	93615351	93616300	+	0	NA	intron (NM_001261409, intron 3 of 11)	intron (NM_001261409, intron 3 of 11)	-1728	NM_001261410	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
80733	chr16	3128971	3130430	+	0	NA	intron (NR_110900, intron 3 of 5)	LTR41|LTR|ERVL	5182	NR_110900	100507458		NR_110900		ZNF213-AS1	-	ZNF213 antisense RNA 1 (head to head)	ncRNA
81979	chr16	11882571	11882730	+	0	NA	intron (NM_001130007, intron 11 of 14)	intron (NM_001130007, intron 11 of 14)	-31108	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
199332	chr6	113860271	113860430	+	0	NA	exon (NM_002356, exon 2 of 2)	exon (NM_002356, exon 2 of 2)	3005	NM_002356	4082		NM_002356	ENSG00000277443	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
183550	chr5	80117451	80118100	+	0	NA	intron (NR_126061, intron 11 of 13)	MLT1D|LTR|ERVL-MaLR	-34110	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
50878	chr12	49191471	49191830	+	0	NA	Intergenic	Intergenic	-2326	NM_001270400	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
85971	chr16	57303771	57304550	+	0	NA	Intergenic	Intergenic	-19488	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
27886	chr10	41873371	41874230	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	494245	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
86190	chr16	57934871	57935030	+	0	NA	intron (NM_001297, intron 16 of 32)	AluSx|SINE|Alu	36178	NM_001135639	1258		NM_001297	ENSG00000070729	CNGB1	CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45	cyclic nucleotide gated channel subunit beta 1	protein-coding
152166	chr22	20078501	20078700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1632	NM_001190326	54487		NM_022720	ENSG00000128191	DGCR8	C22orf12|DGCRK6|Gy1|pasha	DGCR8 microprocessor complex subunit	protein-coding
22870	chr1	225772371	225772550	+	0	NA	Intergenic	Intergenic	-5353	NM_001130440	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
109167	chr19	292801	293250	+	0	NA	Intergenic	Intergenic	-1622	NM_003712	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
224025	chr9	3385871	3386130	+	0	NA	intron (NM_134428, intron 3 of 17)	intron (NM_134428, intron 3 of 17)	103434	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
85302	chr16	49441371	49441800	+	0	NA	Intergenic	Intergenic	67781	NM_144602	123970		NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
239169	chrY	12309271	12309430	+	0	NA	Intergenic	Intergenic	112240	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
225423	chr9	35065921	35066400	+	0	NA	intron (NM_001354927, intron 4 of 16)	FLAM_C|SINE|Alu	6148	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
98543	chr17	47665801	47666000	+	0	NA	intron (NM_002265, intron 9 of 21)	intron (NM_002265, intron 9 of 21)	14835	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
77624	chr15	85407521	85408780	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	27547	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
160592	chr3	31221971	31222530	+	0	NA	Intergenic	Intergenic	-60463	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
211463	chr7	105095201	105095400	+	0	NA	intron (NM_182931, intron 15 of 26)	(ATATTT)n|Simple_repeat|Simple_repeat	81095	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
220270	chr8	97734001	97734200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-41688	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
226802	chr9	77167251	77168250	+	0	NA	Intergenic	Intergenic	-9695	NM_015186	23230		NM_015186	ENSG00000197969	VPS13A	BLTP5A|CHAC|CHOREIN	vacuolar protein sorting 13 homolog A	protein-coding
153750	chr22	29331671	29332080	+	0	NA	exon (NM_001166019, exon 17 of 21)	exon (NM_001166019, exon 17 of 21)	1383	NR_003686	100113380		NR_003686	ENSG00000239127	SNORD125	-	small nucleolar RNA, C/D box 125	snoRNA
67986	chr14	74913721	74914380	+	0	NA	intron (NR_163406, intron 3 of 11)	MIR3|SINE|MIR	8392	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
88951	chr16	87844571	87844730	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-9246	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
191029	chr6	3154351	3154450	+	0	NA	TTS (NM_004332)	TTS (NM_004332)	3144	NM_001310315	7280		NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
235152	chrX	41113151	41113450	+	0	NA	intron (NM_001039590, intron 1 of 44)	AluY|SINE|Alu	27855	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
104434	chr17	81080751	81081050	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	-2089	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
63264	chr13	113953551	113954550	+	0	NA	3' UTR (NM_001365455, exon 7 of 7)	3' UTR (NM_001365455, exon 7 of 7)	20026	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
62970	chr13	112291321	112291800	+	0	NA	Intergenic	Intergenic	-18560	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
44990	chr11	116948301	116948500	+	0	NA	intron (NM_001366686, intron 3 of 24)	AluJo|SINE|Alu	-110450	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
154230	chr22	31549071	31549230	+	0	NA	intron (NM_001007467, intron 5 of 32)	AluJb|SINE|Alu	52614	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
184060	chr5	91499851	91500280	+	0	NA	Intergenic	Intergenic	-116748	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
9871	chr1	54303471	54304030	+	0	NA	intron (NM_145716, intron 4 of 17)	MER33|DNA|hAT-Charlie	67307	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
59093	chr13	21134001	21134400	+	0	NA	Intergenic	Intergenic	-6314	NM_005870	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
106736	chr18	23528521	23529250	+	0	NA	intron (NM_001276342, intron 12 of 17)	AluSp|SINE|Alu	25374	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
77977	chr15	89408201	89408400	+	0	NA	intron (NR_160724, intron 1 of 2)	intron (NR_160724, intron 1 of 2)	8129	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
89370	chr16	88785001	88786150	+	0	NA	promoter-TSS (NM_001142864)	promoter-TSS (NM_001142864)	-355	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
152198	chr22	20115021	20115580	+	0	NA	promoter-TSS (NM_001278639)	promoter-TSS (NM_001278639)	-549	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
112118	chr19	5595701	5595900	+	0	NA	intron (NM_014649, intron 13 of 20)	intron (NM_014649, intron 13 of 20)	26976	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
144231	chr20	34400751	34401050	+	0	NA	intron (NM_001257138, intron 3 of 23)	AluSz6|SINE|Alu	37627	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
209809	chr7	87908921	87909250	+	0	NA	3' UTR (NM_006716, exon 12 of 12)	3' UTR (NM_006716, exon 12 of 12)	-25058	NM_004194	53616		NM_004194	ENSG00000008277	ADAM22	ADAM 22|DEE61|EIEE61|MDC2	ADAM metallopeptidase domain 22	protein-coding
139807	chr2	230330421	230331080	+	0	NA	intron (NM_138402, intron 2 of 18)	MER44C|DNA|TcMar-Tigger	3557	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
170376	chr3	184711271	184712650	+	0	NA	promoter-TSS (NR_160768)	promoter-TSS (NR_160768)	104	NM_022149	64110		NM_022149	ENSG00000177383	MAGEF1	MAGE-F1	MAGE family member F1	protein-coding
44965	chr11	116847071	116847230	+	0	NA	intron (NM_001281748, intron 23 of 24)	intron (NM_001281748, intron 23 of 24)	-9200	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
33126	chr10	112345401	112345600	+	0	NA	intron (NR_028134, intron 5 of 18)	MIRb|SINE|MIR	11095	NR_028134	390003		NR_028134	ENSG00000243316	GUCY2GP	GUCY2G	guanylate cyclase 2G, pseudogene	pseudo
93419	chr17	18411721	18412900	+	0	NA	non-coding (NR_104343, exon 1 of 2)	non-coding (NR_104343, exon 1 of 2)	1151	NR_104343	400579		NR_104343	ENSG00000220161	LINC02076	-	long intergenic non-protein coding RNA 2076	ncRNA
143751	chr20	32369821	32370280	+	0	NA	intron (NM_015338, intron 3 of 11)	MER124|DNA?|DNA?	10985	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
181509	chr5	43025551	43025650	+	0	NA	intron (NR_104651, intron 2 of 2)	MER11C|LTR|ERVK	-5957	NR_104650	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
11677	chr1	91828771	91828930	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	57301	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
147065	chr20	53720671	53721350	+	0	NA	Intergenic	Intergenic	112656	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
180111	chr5	1272871	1273480	+	0	NA	intron (NM_001193376, intron 6 of 14)	CpG	21893	NM_198253	7015		NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
151631	chr22	16403551	16403650	+	0	NA	Intergenic	TAR1|Satellite|telo	189210	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
4903	chr1	23823001	23823500	+	0	NA	intron (NM_001166059, intron 1 of 6)	intron (NM_001166059, intron 1 of 6)	2179	NM_000191	3155		NM_000191	ENSG00000117305	HMGCL	HL|HMGCL1	3-hydroxy-3-methylglutaryl-CoA lyase	protein-coding
110893	chr19	2710351	2710650	+	0	NA	Intergenic	AluJr|SINE|Alu	-7806	NM_052847	2788		NM_052847	ENSG00000176533	GNG7	HG3B	G protein subunit gamma 7	protein-coding
223699	chr8	144432651	144432980	+	0	NA	intron (NM_013432, intron 22 of 25)	intron (NM_013432, intron 22 of 25)	-2353	NR_109770	100287098		NR_109770		TONSL-AS1	-	TONSL antisense RNA 1	ncRNA
150813	chr21	43957401	43957600	+	0	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	32102	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
43144	chr11	75301671	75301830	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	33436	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
11368	chr1	89638221	89638480	+	0	NA	intron (NM_032270, intron 1 of 2)	MER106A|DNA|hAT-Charlie	5230	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
178146	chr4	142314221	142314680	+	0	NA	intron (NM_001385334, intron 7 of 24)	intron (NM_001385334, intron 7 of 24)	-8506	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
154384	chr22	35230801	35231000	+	0	NA	intron (NR_126356, intron 1 of 5)	THE1D|LTR|ERVL-MaLR	156	NR_126356	104310353		NR_126356	ENSG00000293220	LINC01399	-	long intergenic non-protein coding RNA 1399	ncRNA
25284	chr10	6149001	6149580	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-2906	NR_036111	100422989		NR_036111	ENSG00000263628	MIR3155A	MIR3155|hsa-mir-3155a|mir-3155a	microRNA 3155a	ncRNA
40090	chr11	62793271	62793430	+	0	NA	promoter-TSS (NR_106769)	promoter-TSS (NR_106769)	-579	NR_106769	102465257		NR_106769	ENSG00000274066	MIR6514	hsa-mir-6514|mir-6514	microRNA 6514	ncRNA
84297	chr16	30086271	30086850	+	0	NA	exon (NM_004608, exon 8 of 9)	exon (NM_004608, exon 8 of 9)	5364	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
74633	chr15	60795251	60796080	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	114096	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
192671	chr6	26223561	26224680	+	0	NA	promoter-TSS (NM_001381999)	promoter-TSS (NM_001381999)	-58	NM_001381999	8353		NM_003532	ENSG00000274750	H3C6	H3.1|H3/d|H3C1|H3C10|H3C11|H3C12|H3C2|H3C3|H3C4|H3C7|H3C8|H3FD|HIST1H3E	H3 clustered histone 6	protein-coding
40065	chr11	62753271	62754580	+	0	NA	intron (NM_001363109, intron 1 of 1)	CpG	235	NM_001370809	79842		NM_024784	ENSG00000185670	ZBTB3	-	zinc finger and BTB domain containing 3	protein-coding
91628	chr17	5410801	5411400	+	0	NA	intron (NM_002532, intron 3 of 16)	intron (NM_002532, intron 3 of 16)	-8541	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
141630	chr2	241698421	241698900	+	0	NA	intron (NM_001330161, intron 2 of 7)	intron (NM_001330161, intron 2 of 7)	-3379	NM_032329	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
119085	chr19	39244921	39245480	+	0	NA	promoter-TSS (NM_001346937)	promoter-TSS (NM_001346937)	-123	NM_001346937	282617		NM_172139	ENSG00000197110	IFNL3	IFN-lambda-3|IFN-lambda-4|IL-28B|IL-28C|IL28B|IL28C	interferon lambda 3	protein-coding
168573	chr3	148994171	148994680	+	0	NA	intron (NM_001184720, intron 2 of 6)	intron (NM_001184720, intron 2 of 6)	2885	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
239237	chrY	12953371	12953930	+	0	NA	Intergenic	MER66-int|LTR|ERV1	47945	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
109239	chr19	505051	505150	+	0	NA	3' UTR (NM_130762, exon 4 of 4)	3' UTR (NM_130762, exon 4 of 4)	-2397	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
108929	chr18	79465501	79465880	+	0	NA	intron (NM_172389, intron 7 of 9)	intron (NM_172389, intron 7 of 9)	65391	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
170043	chr3	182716271	182716530	+	0	NA	Intergenic	LTR19C|LTR|ERV1	-77104	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
238927	chrX	154741801	154742000	+	0	NA	intron (NR_104114, intron 1 of 8)	THE1D|LTR|ERVL-MaLR	9177	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
172345	chr4	1710201	1710550	+	0	NA	intron (NM_001306075, intron 1 of 6)	L2|LINE|L2	1944	NM_001306075	7884		NM_006527	ENSG00000163950	SLBP	HBP	stem-loop histone mRNA binding protein	protein-coding
60414	chr13	40975751	40975850	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	6482	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
5342	chr1	25260651	25261050	+	0	NA	intron (NR_135788, intron 1 of 3)	AluSx4|SINE|Alu	7075	NR_135777	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
27201	chr10	28573201	28573600	+	0	NA	intron (NM_100486, intron 3 of 12)	L1MB8|LINE|L1	40282	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
8306	chr1	40059051	40060100	+	0	NA	intron (NM_001350483, intron 2 of 12)	intron (NM_001350483, intron 2 of 12)	18549	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
32790	chr10	105781001	105781200	+	0	NA	intron (NR_120625, intron 3 of 3)	L1HS|LINE|L1	39233	NR_120625	101927549		NR_120625		LINC02627	-	long intergenic non-protein coding RNA 2627	ncRNA
15867	chr1	151454651	151455850	+	0	NA	intron (NM_015100, intron 1 of 18)	MIRb|SINE|MIR	4244	NM_001194937	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
88248	chr16	82456551	82456880	+	0	NA	Intergenic	Intergenic	-170254	NM_001257	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
172870	chr4	3327651	3327750	+	0	NA	intron (NM_198229, intron 2 of 17)	L1PB4|LINE|L1	13553	NM_002926	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
94471	chr17	29266771	29267230	+	0	NA	intron (NM_020772, intron 3 of 3)	AluSq2|SINE|Alu	20141	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
165906	chr3	106349401	106349800	+	0	NA	Intergenic	Intergenic	-480199	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
91446	chr17	4786321	4786780	+	0	NA	promoter-TSS (NM_182566)	promoter-TSS (NM_182566)	-186	NM_182566	284013		NM_182566	ENSG00000182853	VMO1	ERGA6350|PRO21055	vitelline membrane outer layer 1 homolog	protein-coding
174525	chr4	40124601	40125500	+	0	NA	intron (NM_001318359, intron 12 of 18)	intron (NM_001318359, intron 12 of 18)	-66030	NM_001278368	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
126232	chr2	27051201	27053450	+	0	NA	intron (NM_001035507, intron 1 of 10)	intron (NM_001035507, intron 1 of 10)	657	NM_021831	60509		NM_021831	ENSG00000084693	AGBL5	CCP5|RP75	AGBL carboxypeptidase 5	protein-coding
70166	chr14	100312901	100313450	+	0	NA	Intergenic	Intergenic	5316	NR_029906	442910		NR_029906	ENSG00000198984	MIR345	MIRN345|hsa-mir-345|mir-345	microRNA 345	ncRNA
215014	chr7	152389151	152389450	+	0	NA	intron (NM_170606, intron 1 of 58)	AluSc|SINE|Alu	46703	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
231342	chr9	130242101	130242300	+	0	NA	TTS (NR_162140)	TTS (NR_162140)	813	NR_162140	113219459		NR_162140		MIR12126	-	microRNA 12126	ncRNA
56308	chr12	112420971	112421130	+	0	NA	intron (NM_002834, intron 1 of 15)	intron (NM_002834, intron 1 of 15)	2103	NM_001330437	5781		NM_002834	ENSG00000179295	PTPN11	BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2	protein tyrosine phosphatase non-receptor type 11	protein-coding
186401	chr5	135377571	135377730	+	0	NA	intron (NM_138610, intron 2 of 8)	L1ME4b|LINE|L1	21581	NM_138610	9555		NM_004893	ENSG00000113648	MACROH2A1	H2A.y|H2A/y|H2AF12M|H2AFY|MACROH2A1.1|mH2A1|macroH2A1.2	macroH2A.1 histone	protein-coding
33058	chr10	110873631	110873900	+	0	NA	intron (NM_145341, intron 1 of 12)	intron (NM_145341, intron 1 of 12)	1837	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
90269	chr17	982021	982430	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2449	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
32765	chr10	104331171	104331980	+	0	NA	intron (NM_001272013, intron 1 of 1)	intron (NM_001272013, intron 1 of 1)	2330	NM_033397	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
69531	chr14	96394521	96394850	+	0	NA	intron (NM_001350891, intron 1 of 16)	intron (NM_001350891, intron 1 of 16)	2557	NM_001350888	122481		NM_152327	ENSG00000140057	AK7	AK 7|CFAP75|FAP75|SPGF27	adenylate kinase 7	protein-coding
106360	chr18	13223201	13223400	+	0	NA	intron (NM_001378100, intron 1 of 6)	intron (NM_001378100, intron 1 of 6)	4540	NM_001378100	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
165656	chr3	101847551	101848200	+	0	NA	intron (NM_001005474, intron 2 of 12)	intron (NM_001005474, intron 2 of 12)	-1639	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
221679	chr8	126396801	126397000	+	0	NA	Intergenic	AluSx1|SINE|Alu	71405	NR_125421	101927657		NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
58729	chr12	132589951	132590480	+	0	NA	Intergenic	Intergenic	8218	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
140239	chr2	231852321	231852800	+	0	NA	Intergenic	Intergenic	39738	NR_031717	100302126		NR_031717	ENSG00000222246	MIR1471	MIRN1471|hsa-mir-1471	microRNA 1471	ncRNA
92644	chr17	10171701	10172400	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	26556	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
115217	chr19	14491901	14492500	+	0	NA	intron (NM_202468, intron 1 of 7)	MIRc|SINE|MIR	3927	NM_202470	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
155297	chr22	38172501	38173630	+	0	NA	intron (NM_001199562, intron 1 of 15)	intron (NM_001199562, intron 1 of 15)	8765	NM_001199562	8398		NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
21442	chr1	205455571	205456130	+	0	NA	promoter-TSS (NR_148934)	promoter-TSS (NR_148934)	-208	NR_148934	284577		NR_148934	ENSG00000224717	LEMD1-DT	-	LEMD1 divergent transcript	ncRNA
184119	chr5	94573271	94573730	+	0	NA	intron (NM_001385723, intron 1 of 4)	AluSz|SINE|Alu	44625	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
37306	chr11	14750471	14751200	+	0	NA	intron (NM_001363569, intron 1 of 15)	L3b|LINE|CR1	107031	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
166055	chr3	108821821	108822780	+	0	NA	promoter-TSS (NM_016388)	promoter-TSS (NM_016388)	-486	NM_001317747	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
208022	chr7	55582621	55582930	+	0	NA	Intergenic	L1PA5|LINE|L1	-10273	NM_001321244	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
187166	chr5	140576621	140576880	+	0	NA	Intergenic	L1MB5|LINE|L1	-12146	NM_133174	10307		NM_006051	ENSG00000113108	APBB3	FE65L2|SRA	amyloid beta precursor protein binding family B member 3	protein-coding
222021	chr8	130081221	130081680	+	0	NA	intron (NM_001362925, intron 25 of 29)	intron (NM_001362925, intron 25 of 29)	3318	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
96925	chr17	42156501	42157650	+	0	NA	3' UTR (NM_012285, exon 17 of 17)	3' UTR (NM_012285, exon 17 of 17)	-2086	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
214788	chr7	151122471	151122630	+	0	NA	intron (NM_001350103, intron 9 of 18)	(CCT)n|Simple_repeat|Simple_repeat	7912	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
64855	chr14	35240001	35240400	+	0	NA	intron (NM_001256678, intron 4 of 6)	intron (NM_001256678, intron 4 of 6)	-38358	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
162448	chr3	48465621	48467650	+	0	NA	TTS (NM_001271022)	TTS (NM_001271022)	405	NM_033629	11277		NM_007248	ENSG00000213689	TREX1	AGS1|CRV|DRN3|HERNS|RVCLS	three prime repair exonuclease 1	protein-coding
139034	chr2	218470971	218471330	+	0	NA	intron (NM_020935, intron 20 of 25)	L2a|LINE|L2	52027	NM_007127	7429		NM_007127	ENSG00000127831	VIL1	D2S1471|VIL	villin 1	protein-coding
83689	chr16	28423271	28423630	+	0	NA	intron (NM_001199142, intron 1 of 21)	AluSx|SINE|Alu	3004	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
228777	chr9	111480871	111481650	+	0	NA	intron (NM_001364929, intron 1 of 49)	AluY|SINE|Alu	2302	NM_001364930	23392		NM_001080398	ENSG00000136813	ECPAS	ECM29|KIAA0368	Ecm29 proteasome adaptor and scaffold	protein-coding
19436	chr1	174349571	174350030	+	0	NA	intron (NM_001366447, intron 11 of 20)	SVA_F|Retroposon|SVA	74700	NM_001366449	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
56742	chr12	120133601	120133800	+	0	NA	intron (NM_006836, intron 53 of 57)	MIR3|SINE|MIR	-16947	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
193138	chr6	29618171	29618350	+	0	NA	intron (NM_021903, intron 6 of 17).7	intron (NM_021903, intron 6 of 17).7	9968	NM_021903	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
139301	chr2	219522071	219522380	+	0	NA	intron (NM_182847, intron 1 of 8)	CR1-L3A_Croc|LINE|CR1	7743	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
142235	chr20	3097371	3097530	+	0	NA	Intergenic	AluY|SINE|Alu	-9461	NR_038395	100134015		NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
79582	chr16	1001871	1002030	+	0	NA	Intergenic	Intergenic	20180	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
212642	chr7	129493951	129494430	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-8341	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
216135	chr8	11459821	11460080	+	0	NA	intron (NM_053279, intron 1 of 2)	AluSq2|SINE|Alu	6803	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
34673	chr10	133353851	133354280	+	0	NA	Intergenic	Intergenic	3954	NM_001301827	282969		NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
187198	chr5	140664301	140666030	+	0	NA	intron (NM_017706, intron 1 of 6)	L3|LINE|CR1	366	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
61515	chr13	54572571	54572830	+	0	NA	Intergenic	L1HS|LINE|L1	-260652	NR_031628	100302187		NR_031628	ENSG00000283126	MIR1297	MIRN1297|hsa-mir-1297|mir-1297	microRNA 1297	ncRNA
96717	chr17	41634471	41634830	+	0	NA	intron (NR_033415, intron 3 of 10)	AluSq2|SINE|Alu	5549	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
153882	chr22	30282451	30283130	+	0	NA	Intergenic	Intergenic	6715	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
40320	chr11	63906351	63907080	+	0	NA	intron (NM_001163296, intron 16 of 16)	intron (NM_001163296, intron 16 of 16)	10449	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
12771	chr1	109641321	109641600	+	0	NA	Intergenic	Intergenic	-14616	NR_024538	2948		NM_000850	ENSG00000168765	GSTM4	GSTM4-4|GTM4	glutathione S-transferase mu 4	protein-coding
29010	chr10	63516471	63516630	+	0	NA	intron (NM_001322258, intron 1 of 24)	intron (NM_001322258, intron 1 of 24)	-4851	NM_001001330	221035		NM_001001330	ENSG00000165476	REEP3	C10orf74|Yip2b	receptor accessory protein 3	protein-coding
138242	chr2	203012121	203012800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2415	NM_001114132	65065		NM_198945	ENSG00000144426	NBEAL1	A530083I02Rik|ALS2CR16|ALS2CR17	neurobeachin like 1	protein-coding
131943	chr2	99180811	99181980	+	0	NA	promoter-TSS (NM_138798)	promoter-TSS (NM_138798)	211	NM_145212	51263		NM_016503	ENSG00000185414	MRPL30	L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28|uL30m	mitochondrial ribosomal protein L30	protein-coding
116707	chr19	18444151	18444250	+	0	NA	3' UTR (NM_006532, exon 12 of 12)	3' UTR (NM_006532, exon 12 of 12)	-6067	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
37455	chr11	18243751	18244150	+	0	NA	intron (NR_169749, intron 3 of 4)	LTR41C|LTR|ERVL	4718	NM_030754	6289		NM_030754	ENSG00000134339	SAA2	SAA|SAA1	serum amyloid A2	protein-coding
178179	chr4	142384271	142384430	+	0	NA	intron (NR_169599, intron 3 of 22)	Tigger3a|DNA|TcMar-Tigger	18783	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
233720	chrX	1336021	1336280	+	0	NA	promoter-TSS (NM_002183).2	promoter-TSS (NM_002183).2	-466	NM_001267713	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
155122	chr22	37630701	37632440	+	0	NA	intron (NM_001172688, intron 15 of 17)	intron (NM_001172688, intron 15 of 17)	-8099	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
208944	chr7	74173521	74175500	+	0	NA	intron (NM_022170, intron 1 of 6)	CpG	154	NM_022170	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
9521	chr1	51439201	51439600	+	0	NA	intron (NM_001981, intron 12 of 24)	MIR|SINE|MIR	-17305	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
444	chr1	1120151	1120650	+	0	NA	Intergenic	Intergenic	-4311	NM_001330306	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
158365	chr22	50468251	50468350	+	0	NA	intron (NM_002972, intron 2 of 40)	intron (NM_002972, intron 2 of 40)	6735	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
13987	chr1	120617501	120617700	+	0	NA	intron (NR_144516, intron 5 of 43)	MamTip2|DNA|hAT-Tip100	47836	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
139978	chr2	230902001	230902600	+	0	NA	intron (NR_038238, intron 3 of 3)	MamGypLTR3a|LTR|Gypsy	15754	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
24955	chr10	1809271	1809430	+	0	NA	Intergenic	Intergenic	-71825	NM_018702	105		NM_018702	ENSG00000185736	ADARB2	ADAR3|RED2	adenosine deaminase RNA specific B2 (inactive)	protein-coding
127625	chr2	43085071	43085630	+	0	NA	Intergenic	Intergenic	17095	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
100403	chr17	60391271	60393700	+	0	NA	promoter-TSS (NM_032582)	promoter-TSS (NM_032582)	-352	NM_032582	84669		NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding
239010	chrY	2858051	2858400	+	0	NA	intron (NM_001008, intron 5 of 6)	L1MB2|LINE|L1	16623	NM_001008	6192		NM_001008	ENSG00000129824	RPS4Y1	RPS4Y|S4	ribosomal protein S4 Y-linked 1	protein-coding
79318	chr16	563521	564380	+	0	NA	exon (NM_145270, exon 2 of 3)	exon (NM_145270, exon 2 of 3)	-3055	NM_001301159	283948		NM_176677	ENSG00000257108	NHLRC4	-	NHL repeat containing 4	protein-coding
194675	chr6	33671201	33671400	+	0	NA	exon (NM_002224, exon 21 of 58)	exon (NM_002224, exon 21 of 58)	-26828	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
132416	chr2	105811171	105811730	+	0	NA	intron (NM_001004722, intron 1 of 3)	LTR32|LTR|ERVL	-40397	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
123018	chr19	51115601	51116080	+	0	NA	Intergenic	Intergenic	-7431	NM_145232	90353		NM_145232	ENSG00000142544	CTU1	ATPBD3|NCS6	cytosolic thiouridylase subunit 1	protein-coding
130590	chr2	85861001	85861700	+	0	NA	intron (NM_001354234, intron 2 of 8)	intron (NM_001354234, intron 2 of 8)	6320	NM_001042437	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
24437	chr1	243598351	243598800	+	0	NA	intron (NM_005465, intron 8 of 13)	intron (NM_005465, intron 8 of 13)	244707	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
160747	chr3	32499621	32500480	+	0	NA	intron (NM_017801, intron 1 of 3)	intron (NM_017801, intron 1 of 3)	2802	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
223970	chr9	2014401	2015900	+	0	NA	promoter-TSS (NM_001289397)	promoter-TSS (NM_001289397)	-197	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
59475	chr13	26220171	26220330	+	0	NA	intron (NM_183043, intron 2 of 4)	intron (NM_183043, intron 2 of 4)	1507	NM_183044	6049		NM_005977	ENSG00000127870	RNF6	-	ring finger protein 6	protein-coding
53795	chr12	69156551	69157530	+	0	NA	Intergenic	LTR50|LTR|ERVL	-82529	NM_007007	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
129728	chr2	70904851	70905150	+	0	NA	intron (NM_012476, intron 1 of 2)	CpG	4424	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
59323	chr13	24328051	24328380	+	0	NA	Intergenic	CpG	-3235	NR_131903	100861547		NR_131903	ENSG00000261498	LINC00566	-	long intergenic non-protein coding RNA 566	ncRNA
215387	chr7	157469671	157470580	+	0	NA	intron (NR_110157, intron 1 of 3)	intron (NR_110157, intron 1 of 3)	3894	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
177721	chr4	122218871	122219750	+	0	NA	intron (NM_001384125, intron 20 of 87)	intron (NM_001384125, intron 20 of 87)	48707	NM_015312	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
231193	chr9	129929451	129930050	+	0	NA	intron (NM_001363755, intron 6 of 15)	intron (NM_001363755, intron 6 of 15)	60145	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
170349	chr3	184561221	184562550	+	0	NA	promoter-TSS (NM_004443)	promoter-TSS (NM_004443)	100	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
36602	chr11	6738901	6739100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17121	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
108194	chr18	63106571	63107030	+	0	NA	Intergenic	Intergenic	212969	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
219499	chr8	73963951	73964050	+	0	NA	intron (NM_001204857, intron 1 of 3)	AluSq2|SINE|Alu	7908	NM_001204861	6921		NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
37937	chr11	34266521	34266780	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	91360	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
12948	chr1	110829901	110830400	+	0	NA	Intergenic	MER21C|LTR|ERVL	-41049	NM_001040033	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
28784	chr10	62062051	62062350	+	0	NA	intron (NM_001244638, intron 4 of 6)	intron (NM_001244638, intron 4 of 6)	12843	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
217697	chr8	30129371	30129530	+	0	NA	intron (NM_001128208, intron 3 of 3)	AluSz|SINE|Alu	15215	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
205816	chr7	24576221	24576630	+	0	NA	intron (NM_001303037, intron 1 of 11)	intron (NM_001303037, intron 1 of 11)	2973	NM_001303037	51678		NM_016447	ENSG00000105926	PALS2	MPP6|VAM-1|VAM1|p55T	protein associated with LIN7 2, MAGUK p55 family member	protein-coding
174847	chr4	48546371	48546550	+	0	NA	intron (NM_015030, intron 41 of 63)	intron (NM_015030, intron 41 of 63)	56208	NM_175619	326340		NM_175619	ENSG00000182223	ZAR1	Z3CXXC6	zygote arrest 1	protein-coding
125350	chr2	10900351	10900530	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	-11494	NM_002236	3754		NM_002236	ENSG00000162975	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel modifier subfamily F member 1	protein-coding
115030	chr19	14093371	14094150	+	0	NA	exon (NM_001304349, exon 9 of 10)	exon (NM_001304349, exon 9 of 10)	-3009	NM_138352	90378		NM_138352	ENSG00000141858	SAMD1	-	sterile alpha motif domain containing 1	protein-coding
47218	chr12	905321	906600	+	0	NA	intron (NM_018979, intron 26 of 27)	intron (NM_018979, intron 26 of 27)	27116	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
53760	chr12	68669301	68670400	+	0	NA	3' UTR (NM_015646, exon 8 of 8)	3' UTR (NM_015646, exon 8 of 8)	17009	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
205531	chr7	19335921	19336000	+	0	NA	Intergenic	Intergenic	-190539	NM_152898	222894		NM_152898	ENSG00000146618	FERD3L	N-TWIST|NATO3|NTWIST|PTFB|bHLHa31	Fer3 like bHLH transcription factor	protein-coding
149403	chr21	31166501	31167100	+	0	NA	intron (NM_001353694, intron 15 of 27)	intron (NM_001353694, intron 15 of 27)	-5860	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
20055	chr1	185561501	185562100	+	0	NA	intron (NR_110793, intron 3 of 3)	intron (NR_110793, intron 3 of 3)	66688	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
93843	chr17	20995401	20995600	+	0	NA	Intergenic	Intergenic	47511	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
171121	chr3	195532551	195532650	+	0	NA	intron (NM_006241, intron 1 of 5)	intron (NM_006241, intron 1 of 5)	10725	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
237793	chrX	129826251	129826350	+	0	NA	intron (NM_016032, intron 4 of 10)	intron (NM_016032, intron 4 of 10)	17299	NM_001008222	51114		NM_016032	ENSG00000188706	ZDHHC9	CGI89|CXorf11|DHHC9|MMSA1|MRXSR|MRXSZ|ZDHHC10|ZNF379|ZNF380	zinc finger DHHC-type palmitoyltransferase 9	protein-coding
197845	chr6	88865301	88865500	+	0	NA	intron (NM_001286428, intron 7 of 13)	intron (NM_001286428, intron 7 of 13)	98218	NM_003800	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
152834	chr22	21960421	21960800	+	0	NA	intron (NM_001349845, intron 14 of 18)	MIRb|SINE|MIR	-7762	NM_014634	9647		NM_014634	ENSG00000100034	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent 1F	protein-coding
188800	chr5	157993951	157995150	+	0	NA	Intergenic	L2b|LINE|L2	-135405	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
16128	chr1	153655951	153656250	+	0	NA	Intergenic	AluJr|SINE|Alu	-2554	NR_052020	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
61412	chr13	51797501	51798030	+	0	NA	intron (NR_165332, intron 2 of 8)	intron (NR_165332, intron 2 of 8)	5970	NM_001377932	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
197370	chr6	73473571	73474650	+	0	NA	intron (NM_133645, intron 4 of 12)	AluSx4|SINE|Alu	12373	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
118949	chr19	38834601	38835250	+	0	NA	Intergenic	AluJb|SINE|Alu	-3131	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
179479	chr4	184532921	184533350	+	0	NA	intron (NR_147158, intron 1 of 2)	AluY|SINE|Alu	4448	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
100291	chr17	59714871	59715030	+	0	NA	intron (NM_001329394, intron 1 of 11)	AluJr|SINE|Alu	7296	NM_001329401	81671		NM_030938	ENSG00000062716	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding
37044	chr11	12196641	12196900	+	0	NA	intron (NR_144415, intron 2 of 26)	intron (NR_144415, intron 2 of 26)	33087	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
136704	chr2	181143651	181145000	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	20488	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
79485	chr16	770001	770200	+	0	NA	promoter-TSS (NR_030384)	promoter-TSS (NR_030384)	-83	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
140494	chr2	233195251	233195350	+	0	NA	intron (NM_001017915, intron 23 of 26).2	MER117|DNA|hAT-Charlie	-56271	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
28467	chr10	49310541	49310880	+	0	NA	intron (NM_001135196, intron 1 of 2)	intron (NM_001135196, intron 1 of 2)	11540	NM_001135196	118461		NM_199459	ENSG00000177354	C10orf71	CEFIP	chromosome 10 open reading frame 71	protein-coding
191874	chr6	15305001	15306050	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	56670	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
35364	chr11	1257301	1257500	+	0	NA	TTS (NR_106802)	TTS (NR_106802)	795	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
16821	chr1	155611251	155611430	+	0	NA	non-coding (NR_024117, exon 4 of 13)	non-coding (NR_024117, exon 4 of 13)	1122	NM_018116	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
4645	chr1	22133421	22134280	+	0	NA	intron (NM_030761, intron 1 of 4)	intron (NM_030761, intron 1 of 4)	9247	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
150764	chr21	43790901	43791100	+	0	NA	intron (NM_003683, intron 1 of 12)	intron (NM_003683, intron 1 of 12)	1423	NM_003683	8568		NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
134406	chr2	138827571	138827730	+	0	NA	Intergenic	Intergenic	-47260	NM_007226	11249		NM_007226	ENSG00000144227	NXPH2	NPH2	neurexophilin 2	protein-coding
235230	chrX	41378551	41378850	+	0	NA	Intergenic	L1ME3A|LINE|L1	44534	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
177677	chr4	121777821	121778150	+	0	NA	Intergenic	Intergenic	-12585	NR_169194	132332		NM_152399	ENSG00000164112	SMIM43	NEMEP|TMEM155	small integral membrane protein 43	protein-coding
37552	chr11	18706701	18707750	+	0	NA	intron (NR_160413, intron 18 of 20)	intron (NR_160413, intron 18 of 20)	8446	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
154152	chr22	31275201	31275600	+	0	NA	intron (NM_005569, intron 15 of 15)	intron (NM_005569, intron 15 of 15)	17088	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
67961	chr14	74852701	74853180	+	0	NA	TTS (NR_169190)	TTS (NR_169190)	23205	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
72564	chr15	34523601	34524200	+	0	NA	Intergenic	Intergenic	4471	NR_036050	100302160		NR_036050	ENSG00000221649	MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
165802	chr3	105810801	105811000	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	56691	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
93913	chr17	21283621	21285890	+	0	NA	promoter-TSS (NM_001316332)	promoter-TSS (NM_001316332)	44	NM_001316332	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
122540	chr19	49641511	49642780	+	0	NA	promoter-TSS (NM_021228)	promoter-TSS (NM_021228)	-64	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
218042	chr8	38799151	38799450	+	0	NA	intron (NR_148050, intron 2 of 4)	intron (NR_148050, intron 2 of 4)	-6150	NM_001352791	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
148103	chr20	63331021	63331480	+	0	NA	3' UTR (NM_020882, exon 36 of 36)	3' UTR (NM_020882, exon 36 of 36)	-28738	NR_110634	100130587		NR_110634	ENSG00000203900	LOC100130587	-	uncharacterized LOC100130587	ncRNA
96177	chr17	39726571	39727200	+	0	NA	TTS (NR_039881)	TTS (NR_039881)	390	NR_039881	100616132		NR_039881	ENSG00000265178	MIR4728	-	microRNA 4728	ncRNA
71853	chr15	22252551	22252850	+	0	NA	Intergenic	AluSz|SINE|Alu	-5914	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
136603	chr2	178480061	178481500	+	0	NA	5' UTR (NM_019091, exon 1 of 8)	5' UTR (NM_019091, exon 1 of 8)	323	NM_019091	65977		NM_019091	ENSG00000116095	PLEKHA3	FAPP1	pleckstrin homology domain containing A3	protein-coding
173463	chr4	8539851	8540200	+	0	NA	Intergenic	Intergenic	-40367	NR_045511	27201		NM_080819	ENSG00000155269	GPR78	-	G protein-coupled receptor 78	protein-coding
181798	chr5	50967421	50968350	+	0	NA	Intergenic	Intergenic	2302	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
20444	chr1	198522371	198522630	+	0	NA	TTS (NM_001376863)	TTS (NM_001376863)	18180	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
105313	chr17	82551601	82552550	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	32343	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
12111	chr1	100042451	100042550	+	0	NA	intron (NM_033055, intron 1 of 11)	intron (NM_033055, intron 1 of 11)	4405	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
145188	chr20	38880551	38880650	+	0	NA	intron (NM_001172735, intron 2 of 9)	AluJb|SINE|Alu	-45817	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
59572	chr13	27428951	27429300	+	0	NA	intron (NM_002097, intron 2 of 8)	intron (NM_002097, intron 2 of 8)	4506	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
73305	chr15	41883121	41883500	+	0	NA	intron (NM_016642, intron 8 of 67)	intron (NM_016642, intron 8 of 67)	-9467	NR_135681	105370792		NR_135681	ENSG00000174171	LOC105370792	-	uncharacterized LOC105370792	ncRNA
66938	chr14	65501421	65501680	+	0	NA	intron (NM_004480, intron 2 of 9)	intron (NM_004480, intron 2 of 9)	30448	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
149291	chr21	28781671	28781830	+	0	NA	Intergenic	MER77|LTR|ERVL	103617	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
237694	chrX	124368851	124368950	+	0	NA	intron (NM_002351, intron 2 of 3)	intron (NM_002351, intron 2 of 3)	22337	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
16783	chr1	155523301	155523700	+	0	NA	intron (NM_018489, intron 1 of 27)	AluJb|SINE|Alu	-38542	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
119210	chr19	39450351	39450900	+	0	NA	intron (NM_001111020, intron 2 of 29)	intron (NM_001111020, intron 2 of 29)	4977	NM_003169	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
151566	chr21	46562651	46562950	+	0	NA	intron (NM_001353942, intron 34 of 37)	intron (NM_001353942, intron 34 of 37)	42282	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
12818	chr1	109983271	109983430	+	0	NA	Intergenic	AluSg4|SINE|Alu	-1415	NM_001242673	10768		NM_006621	ENSG00000168710	AHCYL1	DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA	adenosylhomocysteinase like 1	protein-coding
47026	chr12	387571	388000	+	0	NA	intron (NM_001042603, intron 1 of 27)	intron (NM_001042603, intron 1 of 27)	1535	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
159290	chr3	12980701	12981100	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	6201	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
7474	chr1	33128201	33129200	+	0	NA	Intergenic	Intergenic	46522	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
136953	chr2	190359451	190360530	+	0	NA	intron (NM_001128928, intron 2 of 6)	intron (NM_001128928, intron 2 of 6)	16401	NM_001128928	3628		NM_002194	ENSG00000151689	INPP1	-	inositol polyphosphate-1-phosphatase	protein-coding
167938	chr3	136188551	136189750	+	0	NA	intron (NM_018133, intron 1 of 1)	AluJb|SINE|Alu	5318	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
218199	chr8	42006921	42007180	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-44700	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
109494	chr19	823801	824250	+	0	NA	Intergenic	Intergenic	-2070	NM_001270366	79948		NM_024888	ENSG00000129951	PLPPR3	LPPR3|LPR3|PRG-2|PRG2	phospholipid phosphatase related 3	protein-coding
194143	chr6	32014301	32014500	+	0	NA	promoter-TSS (NM_001002029).4	promoter-TSS (NM_001002029).4	-395	NM_001242823	100293534		NM_001242823		C4B_2	-	complement component 4B (Chido/Rodgers blood group), copy 2	protein-coding
101308	chr17	66493801	66494380	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-77236	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
235384	chrX	45001801	45002000	+	0	NA	intron (NM_001291416, intron 4 of 28)	HERVIP10FH-int|LTR|ERV1	128712	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
14392	chr1	144219921	144220180	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	28155	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
1918	chr1	6469551	6469850	+	0	NA	intron (NM_001042665, intron 16 of 20)	intron (NM_001042665, intron 16 of 20)	-3505	NM_148966	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
83876	chr16	28935351	28935650	+	0	NA	exon (NM_001770, exon 5 of 15)	exon (NM_001770, exon 5 of 15)	3529	NR_169755	930		NM_001770	ENSG00000177455	CD19	B4|CVID3	CD19 molecule	protein-coding
66289	chr14	61388141	61389550	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	67402	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
143828	chr20	32503671	32503830	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	-6209	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
124320	chr19	58099351	58099650	+	0	NA	intron (NM_001145542, intron 1 of 6)	L1MD2|LINE|L1	-1137	NM_023926	65982		NM_023926	ENSG00000121413	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
95594	chr17	37373171	37373830	+	0	NA	intron (NM_198839, intron 1 of 59)	AluSz|SINE|Alu	-2485	NM_001321399	284099		NM_173625	ENSG00000278505	C17orf78	-	chromosome 17 open reading frame 78	protein-coding
150663	chr21	43430071	43431200	+	0	NA	Intergenic	Intergenic	-3504	NM_001320643	102724428		NM_001320643	ENSG00000275993	LOC102724428	SIK|SIK-1|SIK1|SIK1B|SNF1LK	salt inducible kinase 1B (putative)	protein-coding
180105	chr5	1217821	1218080	+	0	NA	intron (NM_001003841, intron 8 of 11)	intron (NM_001003841, intron 8 of 11)	-7431	NM_182632	348932		NM_182632	ENSG00000164363	SLC6A18	Xtrp2	solute carrier family 6 member 18	protein-coding
55500	chr12	104877071	104877400	+	0	NA	intron (NM_001352172, intron 6 of 10)	intron (NM_001352172, intron 6 of 10)	81055	NM_001352170	84102		NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
118588	chr19	36417951	36418930	+	0	NA	intron (NM_133466, intron 1 of 4)	CpG	204	NM_133466	284406		NM_133466	ENSG00000181007	ZFP82	ZNF545	ZFP82 zinc finger protein	protein-coding
35928	chr11	2446951	2447300	+	0	NA	intron (NM_000218, intron 1 of 15)	intron (NM_000218, intron 1 of 15)	2117	NM_000218	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
99397	chr17	49993121	49993930	+	0	NA	exon (NM_005220, exon 2 of 3)	exon (NM_005220, exon 2 of 3)	1699	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
186293	chr5	134560301	134561050	+	0	NA	intron (NM_001289985, intron 5 of 11)	intron (NM_001289985, intron 5 of 11)	34567	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
74513	chr15	60391871	60392030	+	0	NA	intron (NM_001136015, intron 1 of 13)	intron (NM_001136015, intron 1 of 13)	6036	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
181766	chr5	50730121	50730830	+	0	NA	intron (NM_024615, intron 2 of 25)	THE1C|LTR|ERVL-MaLR	63061	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
81325	chr16	4733271	4734400	+	0	NA	promoter-TSS (NM_139170)	promoter-TSS (NM_139170)	436	NM_001324130	124401		NM_133450	ENSG00000168096	ANKS3	-	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding
92145	chr17	7649471	7649630	+	0	NA	intron (NM_001303263, intron 1 of 5)	AluSx3|SINE|Alu	-1376	NM_001678	482		NM_001678	ENSG00000129244	ATP1B2	AMOG	ATPase Na+/K+ transporting subunit beta 2	protein-coding
115503	chr19	15413771	15413930	+	0	NA	intron (NM_014371, intron 1 of 13)	intron (NM_014371, intron 1 of 13)	5138	NM_014371	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
105019	chr17	82043351	82043450	+	0	NA	Intergenic	Intergenic	5482	NR_159948	113523640		NR_159947	ENSG00000264569	DCXR-DT	-	DCXR divergent transcript	ncRNA
81473	chr16	8909851	8909950	+	0	NA	intron (NR_135826, intron 11 of 30)	AluSx4|SINE|Alu	26739	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
194392	chr6	32996951	32997250	+	0	NA	Intergenic	L1MC5a|LINE|L1	12491	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
161045	chr3	38009301	38010030	+	0	NA	exon (NM_001130964, exon 9 of 15)	exon (NM_001130964, exon 9 of 15)	14855	NM_001130964	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
235017	chrX	40005021	40005480	+	0	NA	Intergenic	Intergenic	92708	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
228621	chr9	105656121	105656830	+	0	NA	Intergenic	CpG	-5982	NM_005421	6887		NM_005421	ENSG00000186051	TAL2	-	TAL bHLH transcription factor 2	protein-coding
202622	chr6	158743351	158743930	+	0	NA	intron (NM_001318745, intron 8 of 14)	AluSz|SINE|Alu	21113	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
26131	chr10	13777801	13778500	+	0	NA	intron (NM_018027, intron 6 of 24)	intron (NM_018027, intron 6 of 24)	-70583	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
122273	chr19	49061671	49062100	+	0	NA	exon (NM_006179, exon 2 of 2)	exon (NM_006179, exon 2 of 2)	1982	NM_006179	4909		NM_006179	ENSG00000225950	NTF4	GLC10|GLC1O|NT-4|NT-4/5|NT-5|NT4|NT5|NTF5	neurotrophin 4	protein-coding
101971	chr17	74737501	74739830	+	0	NA	intron (NM_001163990, intron 1 of 7)	intron (NM_001163990, intron 1 of 7)	1409	NM_001006638	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
73456	chr15	43473351	43473850	+	0	NA	intron (NM_001355001, intron 10 of 28)	LTR12C|LTR|ERV1	19556	NM_001141980	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
164626	chr3	66395201	66395400	+	0	NA	intron (NM_001377344, intron 10 of 17)	intron (NM_001377344, intron 10 of 17)	10467	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
76798	chr15	77028351	77028650	+	0	NA	intron (NR_135552, intron 6 of 11)	intron (NR_135552, intron 6 of 11)	33374	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
111518	chr19	4007001	4009130	+	0	NA	intron (NM_015897, intron 1 of 10)	CpG	329	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
151598	chr22	11214051	11214350	+	0	NA	Intergenic	SAR|Satellite|Satellite	-252671	NR_132320	102723780		NR_132320		FRG1FP	-	FSHD region gene 1 family member F, pseudogene	pseudo
30000	chr10	73763121	73764250	+	0	NA	intron (NM_198597, intron 7 of 22)	(T)n|Simple_repeat|Simple_repeat	-8591	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
167074	chr3	126992951	126993850	+	0	NA	intron (NM_032242, intron 2 of 30)	intron (NM_032242, intron 2 of 30)	4806	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
153986	chr22	30385751	30386250	+	0	NA	intron (NM_001017981, intron 3 of 8)	intron (NM_001017981, intron 3 of 8)	1411	NM_001017981	200312		NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
124577	chr2	674501	674900	+	0	NA	intron (NM_001352680, intron 3 of 5)	intron (NM_001352680, intron 3 of 5)	2004	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
218924	chr8	60847421	60847680	+	0	NA	intron (NM_017780, intron 23 of 37)	intron (NM_017780, intron 23 of 37)	63248	NR_168431	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
98088	chr17	45587571	45587830	+	0	NA	Intergenic	AluY|SINE|Alu	14162	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
182109	chr5	56069971	56070130	+	0	NA	Intergenic	Intergenic	74883	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
26838	chr10	24721371	24721880	+	0	NA	intron (NR_160021, intron 2 of 26)	intron (NR_160021, intron 2 of 26)	1123	NM_001367453	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
219234	chr8	66921301	66922180	+	0	NA	TTS (NR_002599)	TTS (NR_002599)	809	NR_002598	641648		NR_002598	ENSG00000254341	SNORD87	HBII-276|U87	small nucleolar RNA, C/D box 87	snoRNA
175555	chr4	75516271	75516430	+	0	NA	intron (NM_144721, intron 2 of 4)	L2a|LINE|L2	1877	NM_001317791	152815		NM_144721	ENSG00000174796	THAP6	-	THAP domain containing 6	protein-coding
210431	chr7	100091071	100092430	+	0	NA	TTS (NM_005916)	TTS (NM_005916)	1893	NR_029498	407014		NR_029498	ENSG00000207547	MIR25	MIRN25|hsa-mir-25|miR-25	microRNA 25	ncRNA
205912	chr7	25519951	25520250	+	0	NA	Intergenic	Intergenic	143040	NR_157819	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
129357	chr2	68772551	68773180	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	-2045	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
69040	chr14	91858201	91858980	+	0	NA	intron (NM_001128596, intron 1 of 11)	intron (NM_001128596, intron 1 of 11)	8946	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
166423	chr3	113743171	113743600	+	0	NA	intron (NM_025146, intron 1 of 4)	intron (NM_025146, intron 1 of 4)	2864	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
180564	chr5	14703371	14703530	+	0	NA	Intergenic	Intergenic	-9244	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
197527	chr6	77462651	77462980	+	0	NA	exon (NM_000863, exon 1 of 1)	exon (NM_000863, exon 1 of 1)	676	NM_000863	3351		NM_000863	ENSG00000135312	HTR1B	5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine receptor 1B	protein-coding
21545	chr1	206080571	206080730	+	0	NA	intron (NM_001007544, intron 1 of 5)	intron (NM_001007544, intron 1 of 5)	-2945	NM_001369490	440712		NM_001007544	ENSG00000263961	RHEX	C1orf186	regulator of hemoglobinization and erythroid cell expansion	protein-coding
205283	chr7	8442671	8443030	+	0	NA	intron (NM_152745, intron 2 of 2)	CpG	9241	NM_152745	30010		NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
68504	chr14	88323401	88323600	+	0	NA	promoter-TSS (NM_138317)	promoter-TSS (NM_138317)	-231	NM_138317	54207		NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
212890	chr7	130883101	130883300	+	0	NA	intron (NR_034120, intron 3 of 3)	AluSc|SINE|Alu	-5661	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
39567	chr11	61132721	61133080	+	0	NA	intron (NM_017966, intron 4 of 4)	intron (NM_017966, intron 4 of 4)	28526	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
15207	chr1	149361301	149361630	+	0	NA	non-coding (NR_158171, exon 5 of 5)	non-coding (NR_158171, exon 5 of 5)	23182	NR_158170	100996517		NR_158170		SEC22B3P	SEC22B3	SEC22 homolog B3, pseudogene	pseudo
208208	chr7	65122901	65123630	+	0	NA	Intergenic	CpG	-17765	NR_146906	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
27861	chr10	40976251	40976350	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1391745	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
119037	chr19	38949501	38950500	+	0	NA	exon (NM_024907, exon 2 of 6)	exon (NM_024907, exon 2 of 6)	2687	NM_148169	115290		NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
54528	chr12	92123571	92124300	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	17778	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
1670	chr1	3907071	3907780	+	0	NA	intron (NR_024455, intron 2 of 3)	intron (NR_024455, intron 2 of 3)	7021	NR_024455	100133612		NR_024455	ENSG00000236423	LINC01134	TLNC1	long intergenic non-protein coding RNA 1134	ncRNA
34900	chr11	389421	389680	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-3046	NM_001303029	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
236352	chrX	70435301	70435830	+	0	NA	Intergenic	Intergenic	-9270	NM_021120	1741		NM_020730	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|PPP1R82|SAP102|XLID90|XLMR	discs large MAGUK scaffold protein 3	protein-coding
75140	chr15	64596571	64598000	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	105996	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
8064	chr1	38973901	38974350	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-17119	NM_001136275	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
135214	chr2	159150251	159150550	+	0	NA	exon (NM_001145909, exon 7 of 27)	exon (NM_001145909, exon 7 of 27)	-36435	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
187007	chr5	139751421	139751680	+	0	NA	Intergenic	MIRb|SINE|MIR	-5327	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
94270	chr17	28702501	28702780	+	0	NA	TTS (NM_001320755)	TTS (NM_001320755)	7464	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
27168	chr10	28531001	28531200	+	0	NA	intron (NR_033805, intron 1 of 2)	intron (NR_033805, intron 1 of 2)	1254	NR_033805	220906		NR_033805		WAC-AS1	-	WAC antisense RNA 1 (head to head)	ncRNA
19103	chr1	171489621	171489880	+	0	NA	intron (NM_015172, intron 1 of 33)	MIR|SINE|MIR	4220	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
90809	chr17	2251651	2251750	+	0	NA	intron (NM_017575, intron 8 of 18)	intron (NM_017575, intron 8 of 18)	14485	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
27400	chr10	31341701	31342150	+	0	NA	intron (NM_001323675, intron 1 of 6)	intron (NM_001323675, intron 1 of 6)	20265	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
219380	chr8	70393301	70394150	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	9665	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
5176	chr1	24939301	24939500	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-9124	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
78663	chr15	94348051	94348350	+	0	NA	intron (NM_001385002, intron 9 of 23)	LTR33A_|LTR|ERVL	-7730	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
43645	chr11	85649051	85649150	+	0	NA	intron (NM_001244735, intron 1 of 3)	AluSx1|SINE|Alu	1133	NM_032273	84233		NM_032273	ENSG00000171202	TMEM126A	OPA7	transmembrane protein 126A	protein-coding
119804	chr19	41336071	41336550	+	0	NA	intron (NM_000660, intron 5 of 6)	intron (NM_000660, intron 5 of 6)	17612	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
17795	chr1	159799901	159800630	+	0	NA	promoter-TSS (NM_001284217)	promoter-TSS (NM_001284217)	-247	NM_001284217	343413		NM_001004310	ENSG00000181036	FCRL6	FcRH6	Fc receptor like 6	protein-coding
129851	chr2	72919551	72919650	+	0	NA	intron (NM_004097, intron 1 of 2)	CpG-16147	2081	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
192727	chr6	26366471	26366730	+	0	NA	intron (NM_001197248, intron 1 of 8)	intron (NM_001197248, intron 1 of 8)	1402	NM_001197247	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
177858	chr4	128280571	128280730	+	0	NA	intron (NM_006320, intron 1 of 2)	AluJo|SINE|Alu	7163	NM_006320	10424		NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
181330	chr5	40390201	40391000	+	0	NA	Intergenic	Intergenic	-289315	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
234122	chrX	9693501	9693700	+	0	NA	intron (NM_001139467, intron 10 of 16)	intron (NM_001139467, intron 10 of 16)	72247	NM_000273	4935		NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
85556	chr16	53436521	53437100	+	0	NA	intron (NM_001323611, intron 1 of 21)	MIRb|SINE|MIR	1191	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
62069	chr13	94322871	94323200	+	0	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	-135044	NR_046535	100873972		NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
203141	chr6	166953171	166954000	+	0	NA	intron (NM_003730, intron 1 of 8)	intron (NM_003730, intron 1 of 8)	2965	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
198071	chr6	90233671	90235150	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	62433	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
239285	chrY	13805571	13805980	+	0	NA	Intergenic	AluSx|SINE|Alu	101876	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
60132	chr13	39259471	39259630	+	0	NA	Intergenic	MER21C|LTR|ERVL	221094	NM_001012754	387921		NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
94750	chr17	30810771	30811200	+	0	NA	intron (NM_015986, intron 1 of 7)	AluJb|SINE|Alu	13707	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
214439	chr7	149950101	149950600	+	0	NA	intron (NM_001351028, intron 6 of 9)	intron (NM_001351028, intron 6 of 9)	76381	NM_001367794	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
47396	chr12	2812101	2813300	+	0	NA	promoter-TSS (NM_018463)	promoter-TSS (NM_018463)	32	NM_018463	55846		NM_018463	ENSG00000111203	ITFG2	FGGAP1|KICS3|MDS028	integrin alpha FG-GAP repeat containing 2	protein-coding
48457	chr12	9748521	9749150	+	0	NA	Intergenic	Intergenic	12066	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
2646	chr1	10418801	10419200	+	0	NA	intron (NM_001304451, intron 10 of 11)	AluSx3|SINE|Alu	-11433	NM_198544	100526739		NM_198544	ENSG00000251503	CENPS-CORT	APITD1|APITD1-CORT|CENP-S|CENPS|FAAP16|MHF1	CENPS-CORT readthrough	protein-coding
107218	chr18	36186321	36186900	+	0	NA	promoter-TSS (NM_017947)	promoter-TSS (NM_017947)	825	NR_134605	101927809		NR_134605	ENSG00000260552	COSMOC	-	cell fate and sterol metabolism associated divergent transcript of MOCOS	ncRNA
17760	chr1	159026401	159026600	+	0	NA	intron (NM_001376587, intron 6 of 11)	AluSq10|SINE|Alu	16593	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
64380	chr14	24144971	24145130	+	0	NA	intron (NM_002818, intron 6 of 10)	intron (NM_002818, intron 6 of 10)	-1485	NR_106990	102465801		NR_106990	ENSG00000283856	MIR7703	hsa-mir-7703	microRNA 7703	ncRNA
195989	chr6	41984321	41984580	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSq2|SINE|Alu	-42602	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
206065	chr7	27164301	27164600	+	0	NA	intron (NR_037940, intron 2 of 2)	CpG	1087	NM_152739	3205		NM_002142	ENSG00000078399	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding
187834	chr5	146893021	146893480	+	0	NA	intron (NM_001271900, intron 2 of 10)	intron (NM_001271900, intron 2 of 10)	-14323	NR_073527	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
14022	chr1	120730201	120730780	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	6551	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
129965	chr2	73978651	73979730	+	0	NA	intron (NR_104030, intron 1 of 1)	intron (NR_104030, intron 1 of 1)	2249	NR_104030	100874048		NR_104029		DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
114108	chr19	11132201	11132400	+	0	NA	3' UTR (NM_001195798, exon 18 of 18)	3' UTR (NM_001195798, exon 18 of 18)	18826	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
9817	chr1	53913701	53913900	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	19613	NM_213593	1733		NM_000792	ENSG00000211452	DIO1	5DI|THMA2|TXDI1	iodothyronine deiodinase 1	protein-coding
69611	chr14	97538601	97539280	+	0	NA	intron (NR_110166, intron 3 of 4)	intron (NR_110166, intron 3 of 4)	80124	NR_110166	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
205666	chr7	22993571	22993930	+	0	NA	intron (NM_001363466, intron 1 of 11)	L1ME3A|LINE|L1	20380	NM_032581	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
181284	chr5	39437351	39437690	+	0	NA	Intergenic	Intergenic	-12287	NM_001244871	1601		NM_001343	ENSG00000153071	DAB2	DOC-2|DOC2	DAB adaptor protein 2	protein-coding
103991	chr17	80036401	80037450	+	0	NA	intron (NM_001330508, intron 1 of 10)	CpG-11790	283	NM_017950	55036		NM_017950	ENSG00000141519	CCDC40	CFAP172|CILD15|FAP172	coiled-coil domain 40 molecular ruler complex subunit	protein-coding
153578	chr22	26670721	26672000	+	0	NA	non-coding (NR_003491, exon 5 of 5)	non-coding (NR_003491, exon 5 of 5)	-1483	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
105160	chr17	82258721	82259180	+	0	NA	intron (NM_139062, intron 2 of 9)	L1M5|LINE|L1	14750	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
63804	chr14	21385571	21386100	+	0	NA	exon (NM_020920, exon 38 of 38)	exon (NM_020920, exon 38 of 38)	-1816	NM_007192	11198		NM_007192	ENSG00000092201	SUPT16H	CDC68|FACTP140|NEDDFAC|SPT16|SPT16/CDC68	SPT16 homolog, facilitates chromatin remodeling subunit	protein-coding
48935	chr12	12716301	12718480	+	0	NA	promoter-TSS (NM_004064)	promoter-TSS (NM_004064)	22	NM_004064	1027		NM_004064	ENSG00000111276	CDKN1B	CDKN4|KIP1|MEN1B|MEN4|P27KIP1	cyclin dependent kinase inhibitor 1B	protein-coding
79296	chr16	543671	544030	+	0	NA	TTS (NR_036137)	TTS (NR_036137)	573	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
210396	chr7	99935201	99935400	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-5680	NM_181538	349149		NM_181538	ENSG00000176402	GJC3	CX29|CX30.2|CX31.3|GJE1	gap junction protein gamma 3	protein-coding
118976	chr19	38872771	38873900	+	0	NA	intron (NM_001195833, intron 4 of 11)	L2a|LINE|L2	4940	NM_198445	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
175632	chr4	76215101	76215300	+	0	NA	intron (NM_001242936, intron 1 of 7)	LTR16B2|LTR|ERVL	1160	NM_001242936	100129583		NM_001136570	ENSG00000189157	FAM47E	-	family with sequence similarity 47 member E	protein-coding
6268	chr1	27588851	27589550	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	14294	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
42700	chr11	72666301	72666800	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	2514	NM_001146209	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
179446	chr4	184413551	184413950	+	0	NA	intron (NM_002199, intron 5 of 8)	intron (NM_002199, intron 5 of 8)	-31444	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
10893	chr1	78673171	78673330	+	0	NA	Intergenic	L1PBb|LINE|L1	23419	NM_006417	10561		NM_006417	ENSG00000137965	IFI44	MTAP44|TLDC5|p44	interferon induced protein 44	protein-coding
57987	chr12	124223951	124224050	+	0	NA	intron (NM_001347902, intron 3 of 4)	L1ME3A|LINE|L1	-65164	NM_181709	144347		NM_181709	ENSG00000178882	RFLNA	CFM2|FAM101A	refilin A	protein-coding
27679	chr10	33112371	33112950	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	4147	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
108838	chr18	79136851	79137050	+	0	NA	intron (NM_198531, intron 5 of 29)	THE1C|LTR|ERVL-MaLR	67556	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
188214	chr5	150707521	150707780	+	0	NA	TTS (NM_016221)	TTS (NM_016221)	-6588	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
10922	chr1	84090421	84091400	+	0	NA	intron (NM_207578, intron 1 of 8)	intron (NM_207578, intron 1 of 8)	12831	NM_001375576	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
99199	chr17	49510571	49510730	+	0	NA	promoter-TSS (NR_106751)	promoter-TSS (NR_106751)	-167	NR_106751	102465141		NR_106751	ENSG00000277478	MIR6165	hsa-mir-6165	microRNA 6165	ncRNA
135800	chr2	169835371	169835980	+	0	NA	intron (NM_172070, intron 1 of 38)	AluSx|SINE|Alu	8221	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
226656	chr9	74942601	74943200	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	10012	NM_017998	55071		NM_017998	ENSG00000135045	C9orf40	-	chromosome 9 open reading frame 40	protein-coding
174274	chr4	38178671	38178830	+	0	NA	Intergenic	Intergenic	58796	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
190428	chr5	179834001	179834400	+	0	NA	intron (NM_003900, intron 7 of 7).2	intron (NM_003900, intron 7 of 7).2	13295	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
144583	chr20	35782771	35782930	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	10835	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
233645	chrX	750351	750650	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	126156	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
19078	chr1	170168471	170168630	+	0	NA	3' UTR (NM_001136107, exon 4 of 4)	3' UTR (NM_001136107, exon 4 of 4)	-5829	NR_146891	105371609		NR_146891	ENSG00000233985	LINC01681	-	long intergenic non-protein coding RNA 1681	ncRNA
126150	chr2	26188321	26189030	+	0	NA	3' UTR (NM_001191033, exon 6 of 6)	3' UTR (NM_001191033, exon 6 of 6)	7959	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
196257	chr6	42918371	42918730	+	0	NA	intron (NM_001243170, intron 1 of 2)	AluSg4|SINE|Alu	2497	NM_138296	171558		NM_138296	ENSG00000171611	PTCRA	PT-ALPHA|PTA	pre T cell antigen receptor alpha	protein-coding
86664	chr16	67476821	67477080	+	0	NA	intron (NM_004691, intron 1 of 7)	AluSx1|SINE|Alu	4207	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
157109	chr22	42639071	42639530	+	0	NA	TTS (NM_001165877)	TTS (NM_001165877)	1301	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
134094	chr2	131681951	131683020	+	0	NA	promoter-TSS (NR_167888)	promoter-TSS (NR_167888)	-14	NR_149016	29798		NM_013310	ENSG00000287151	LINC03124	C2orf27|C2orf27A|C2orf27B	long intergenic non-protein coding RNA 3124	ncRNA
16056	chr1	153243371	153243730	+	0	NA	Intergenic	Intergenic	-16137	NM_000427	4014		NM_000427	ENSG00000203782	LORICRIN	LOR	loricrin cornified envelope precursor protein	protein-coding
127740	chr2	43576951	43577680	+	0	NA	intron (NR_144316, intron 9 of 36)	intron (NR_144316, intron 9 of 36)	18659	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
70181	chr14	100377701	100378200	+	0	NA	intron (NM_001350947, intron 1 of 6)	intron (NM_001350947, intron 1 of 6)	1465	NM_001350947	79446		NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
50711	chr12	48937371	48937530	+	0	NA	3' UTR (NM_001659, exon 5 of 5)	3' UTR (NM_001659, exon 5 of 5)	-11903	NM_001143782	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
140006	chr2	230975701	230976350	+	0	NA	Intergenic	L1MB5|LINE|L1	20007	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
205698	chr7	23287671	23287830	+	0	NA	Intergenic	Intergenic	-11589	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
226906	chr9	79478501	79478700	+	0	NA	Intergenic	Intergenic	-93173	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
9515	chr1	51344651	51345480	+	0	NA	promoter-TSS (NM_001144832)	promoter-TSS (NM_001144832)	51	NM_001144832	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
202400	chr6	157867121	157867530	+	0	NA	intron (NM_016224, intron 1 of 17)	intron (NM_016224, intron 1 of 17)	44079	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
46692	chr11	128759401	128759680	+	0	NA	intron (NM_001271012, intron 2 of 6)	L2|LINE|L2	-63517	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
142287	chr20	3235601	3236100	+	0	NA	intron (NM_001174090, intron 2 of 19)	intron (NM_001174090, intron 2 of 19)	1877	NM_032034	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
210368	chr7	99593271	99593630	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-4817	NM_001195542	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
12450	chr1	107788201	107788480	+	0	NA	intron (NM_006113, intron 2 of 26)	L2|LINE|L2	-99841	NM_001079874	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
207388	chr7	44147471	44147630	+	0	NA	promoter-TSS (NM_001354801)	promoter-TSS (NM_001354801)	-917	NM_001354801	2645		NM_000162	ENSG00000106633	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2|PNDM1	glucokinase	protein-coding
195548	chr6	37478971	37479130	+	0	NA	intron (NM_015050, intron 22 of 23)	intron (NM_015050, intron 22 of 23)	20843	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
96379	chr17	40109471	40109850	+	0	NA	Intergenic	L2c|LINE|L2	-9071	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
183778	chr5	81838421	81838780	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-87347	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
70888	chr14	103873651	103874030	+	0	NA	Intergenic	Intergenic	26119	NR_038436	145216		NR_038436	ENSG00000258735	PPP1R13B-DT	HITT|LINC00637	PPP1R13B divergent transcript	ncRNA
216187	chr8	11820101	11820780	+	0	NA	intron (NM_004462, intron 3 of 7)	L1PA6|LINE|L1	11296	NM_001287751	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
139315	chr2	219539521	219539980	+	0	NA	TTS (NM_018674)	TTS (NM_018674)	3347	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
77125	chr15	79091851	79092350	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-1320	NM_002891	5923		NM_002891	ENSG00000058335	RASGRF1	CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1	Ras protein specific guanine nucleotide releasing factor 1	protein-coding
23904	chr1	234980551	234981150	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	-16851	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
45477	chr11	118594721	118595930	+	0	NA	intron (NM_001142281, intron 7 of 8)	intron (NM_001142281, intron 7 of 8)	-11111	NM_015157	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
81095	chr16	4357651	4358280	+	0	NA	intron (NM_001351729, intron 25 of 27)	intron (NM_001351729, intron 25 of 27)	-6644	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
152007	chr22	19289701	19290200	+	0	NA	intron (NM_001835, intron 1 of 31)	intron (NM_001835, intron 1 of 31)	1769	NM_007098	8218		NM_001835	ENSG00000070371	CLTCL1	CHC22|CLH22|CLTCL|CLTD	clathrin heavy chain like 1	protein-coding
99027	chr17	48854951	48855450	+	0	NA	intron (NM_001261391, intron 10 of 13)	intron (NM_001261391, intron 10 of 13)	24165	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
186688	chr5	138661401	138661850	+	0	NA	Intergenic	Intergenic	-86224	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
156322	chr22	40649371	40649530	+	0	NA	Intergenic	AluJr|SINE|Alu	-12731	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
108467	chr18	70621621	70622250	+	0	NA	Intergenic	LTR33A|LTR|ERVL	29019	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
26720	chr10	22672171	22672400	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	41823	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
238469	chrX	153333871	153335030	+	0	NA	intron (NM_001080485, intron 1 of 4)	CpG	295	NM_001080485	10838		NM_020636	ENSG00000063587	ZNF275	-	zinc finger protein 275	protein-coding
1742	chr1	5994151	5995900	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	2349	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
193894	chr6	31614151	31614650	+	0	NA	promoter-TSS (NM_001623).6	promoter-TSS (NM_001623).6	-834	NM_001318970	199		NM_001623	ENSG00000204472	AIF1	AIF-1|IBA1|IRT-1|IRT1	allograft inflammatory factor 1	protein-coding
47851	chr12	6620401	6622250	+	0	NA	5' UTR (NM_001142961, exon 2 of 2)	5' UTR (NM_001142961, exon 2 of 2)	10324	NM_001142961	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
109006	chr18	79706121	79706530	+	0	NA	intron (NM_001318511, intron 5 of 11)	intron (NM_001318511, intron 5 of 11)	24895	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
232593	chr9	136409701	136411500	+	0	NA	promoter-TSS (NM_006643)	promoter-TSS (NM_006643)	14	NM_001039707	10807		NM_006643	ENSG00000165689	ENTR1	NY-CO-3|SDCCAG3|SDDAG3	endosome associated trafficking regulator 1	protein-coding
81060	chr16	4326001	4326650	+	0	NA	intron (NR_110901, intron 2 of 3)	intron (NR_110901, intron 2 of 3)	2015	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
51420	chr12	52015601	52016480	+	0	NA	TTS (NM_181711)	TTS (NM_181711)	5548	NM_001271856	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
62603	chr13	100451851	100451980	+	0	NA	intron (NM_001178004, intron 21 of 22)	(CT)n|Simple_repeat|Simple_repeat	29100	NR_047686	100885777		NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
186415	chr5	135543301	135544950	+	0	NA	Intergenic	CpG	-8161	NM_006161	4762		NM_006161	ENSG00000181965	NEUROG1	AKA|CCDDRD|Math4C|NEUROD3|bHLHa6|ngn1	neurogenin 1	protein-coding
225055	chr9	33203551	33203650	+	0	NA	Intergenic	Intergenic	35741	NR_108108	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
224453	chr9	15495271	15495430	+	0	NA	intron (NM_001317898, intron 3 of 10)	intron (NM_001317898, intron 3 of 10)	14939	NM_021144	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
18707	chr1	167443871	167444030	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	74579	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
215335	chr7	157363501	157364450	+	0	NA	intron (NM_001363676, intron 3 of 6)	intron (NM_001363676, intron 3 of 6)	26971	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
104299	chr17	80876501	80878180	+	0	NA	intron (NM_001163034, intron 13 of 29)	intron (NM_001163034, intron 13 of 29)	-71708	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
61635	chr13	73832251	73832550	+	0	NA	intron (NM_007249, intron 4 of 7)	intron (NM_007249, intron 4 of 7)	268156	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
234297	chrX	13693521	13694100	+	0	NA	intron (NM_001195328, intron 1 of 1)	intron (NM_001195328, intron 1 of 1)	4682	NM_004251	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
78009	chr15	89750121	89751580	+	0	NA	exon (NM_018670, exon 1 of 2)	exon (NM_018670, exon 1 of 2)	459	NM_018670	55897		NM_018670	ENSG00000166823	MESP1	bHLHc5	mesoderm posterior bHLH transcription factor 1	protein-coding
88576	chr16	85564171	85564800	+	0	NA	Intergenic	L2c|LINE|L2	-46924	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
47158	chr12	768871	769250	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSx3|SINE|Alu	16137	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
150286	chr21	41923571	41923930	+	0	NA	intron (NM_015500, intron 2 of 13)	intron (NM_015500, intron 2 of 13)	2953	NM_199050	25966		NM_015500	ENSG00000157617	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium dependent domain containing 2	protein-coding
213923	chr7	142587601	142587880	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-78559	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
111740	chr19	4358951	4360150	+	0	NA	TTS (NM_003025)	TTS (NM_003025)	15988	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
56278	chr12	112125101	112126530	+	0	NA	5' UTR (NM_001143906, exon 1 of 12)	5' UTR (NM_001143906, exon 1 of 12)	255	NM_006700	10906		NM_006700	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
20483	chr1	198636421	198637200	+	0	NA	Intergenic	Intergenic	-2158	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
204938	chr7	6258651	6259150	+	0	NA	intron (NM_004227, intron 1 of 12)	intron (NM_004227, intron 1 of 12)	13724	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
143472	chr20	31057371	31057530	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-200214	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
106911	chr18	26089711	26091900	+	0	NA	promoter-TSS (NM_001007559)	promoter-TSS (NM_001007559)	-158	NM_005637	6760		NM_005637	ENSG00000141380	SS18	SMARCL1|SSXT|SYT	SS18 subunit of BAF chromatin remodeling complex	protein-coding
214876	chr7	151400171	151401130	+	0	NA	intron (NM_001284261, intron 1 of 4)	AluSz|SINE|Alu	-8511	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
120591	chr19	45011201	45012330	+	0	NA	intron (NM_006509, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	10301	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
6854	chr1	31060501	31060700	+	0	NA	intron (NM_014676, intron 1 of 21)	intron (NM_014676, intron 1 of 21)	5117	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
69319	chr14	93205401	93206400	+	0	NA	intron (NM_032490, intron 1 of 1)	intron (NM_032490, intron 1 of 1)	-1156	NR_038150	55148		NM_175748	ENSG00000012963	UBR7	C14orf130|LICAS	ubiquitin protein ligase E3 component n-recognin 7	protein-coding
59256	chr13	24053371	24053900	+	0	NA	intron (NM_001286792, intron 3 of 14)	intron (NM_001286792, intron 3 of 14)	73833	NR_104595	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
233971	chrX	2695421	2695780	+	0	NA	intron (NR_135623, intron 1 of 10)	AluJr|SINE|Alu	4305	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
116578	chr19	18245921	18246380	+	0	NA	intron (NM_000923, intron 1 of 15)	AluSx1|SINE|Alu	2050	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
96520	chr17	40337821	40338530	+	0	NA	intron (NM_001145302, intron 2 of 6)	intron (NM_001145302, intron 2 of 6)	-3991	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
82919	chr16	21816121	21816380	+	0	NA	intron (NR_003370, intron 3 of 11).2	AluSq2|SINE|Alu	2924	NR_003370	730092		NR_003370		RRN3P1	-	RRN3 pseudogene 1	pseudo
38854	chr11	47334351	47334450	+	0	NA	intron (NM_000256, intron 26 of 33)	intron (NM_000256, intron 26 of 33)	18302	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
27902	chr10	41889071	41889230	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	478895	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
16744	chr1	155279551	155281100	+	0	NA	intron (NM_020897, intron 1 of 7)	AluSz6|SINE|Alu	2862	NM_020897	57657		NM_020897	ENSG00000143630	HCN3	-	hyperpolarization activated cyclic nucleotide gated potassium channel 3	protein-coding
26637	chr10	22491851	22492400	+	0	NA	Intergenic	Intergenic	-54196	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
80604	chr16	2952571	2953150	+	0	NA	Intergenic	Intergenic	-11415	NM_001253726	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
27371	chr10	30789901	30790100	+	0	NA	Intergenic	L2a|LINE|L2	66781	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
13033	chr1	111219501	111220400	+	0	NA	Intergenic	Intergenic	-7709	NM_001025197	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
21810	chr1	207284451	207284550	+	0	NA	Intergenic	Intergenic	-37178	NM_001300903	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
34402	chr10	132387151	132387250	+	0	NA	Intergenic	Intergenic	-10000	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
135351	chr2	160403071	160404830	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	3932	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
466	chr1	1145601	1146430	+	0	NA	Intergenic	Intergenic	8998	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
197435	chr6	73656301	73656600	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2458	NM_001382634	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
143565	chr20	31633351	31633650	+	0	NA	Intergenic	Intergenic	-4412	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
102240	chr17	75251321	75251580	+	0	NA	intron (NM_001291641, intron 1 of 17)	AluSg4|SINE|Alu	10156	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
152444	chr22	20597571	20598300	+	0	NA	Intergenic	AluYj4|SINE|Alu	89888	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
169956	chr3	179147001	179148800	+	0	NA	promoter-TSS (NM_006218)	promoter-TSS (NM_006218)	73	NR_125401	101928739		NR_125401	ENSG00000229102	PIK3CA-DT	-	PIK3CA divergent transcript	ncRNA
37083	chr11	12888721	12889000	+	0	NA	intron (NM_021961, intron 9 of 12)	MIRb|SINE|MIR	100688	NR_038904	100506305		NR_038904	ENSG00000251381	LINC00958	BLACAT2	long intergenic non-protein coding RNA 958	ncRNA
88772	chr16	87163571	87164000	+	0	NA	Intergenic	Intergenic	-48330	NR_110939	101928708		NR_110939	ENSG00000261095	LOC101928708	-	uncharacterized LOC101928708	ncRNA
36325	chr11	3870971	3871660	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	15253	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
176265	chr4	87010871	87011500	+	0	NA	intron (NM_001313960, intron 1 of 17)	intron (NM_001313960, intron 1 of 17)	4184	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
188857	chr5	159262471	159263900	+	0	NA	promoter-TSS (NM_145049)	promoter-TSS (NM_145049)	-105	NM_145049	134510		NM_145049	ENSG00000164332	UBLCP1	CPUB1	ubiquitin like domain containing CTD phosphatase 1	protein-coding
177970	chr4	139034171	139035380	+	0	NA	intron (NM_012118, intron 1 of 2)	AluJb|SINE|Alu	18994	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
32280	chr10	102114101	102115520	+	0	NA	5' UTR (NM_003893, exon 1 of 11)	5' UTR (NM_003893, exon 1 of 11)	192	NM_003893	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
229011	chr9	113682221	113682550	+	0	NA	Intergenic	Intergenic	88256	NM_001276262	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
97906	chr17	45128301	45128700	+	0	NA	intron (NM_133373, intron 1 of 14)	intron (NM_133373, intron 1 of 14)	4015	NM_133373	113026		NM_133373	ENSG00000161714	PLCD3	PLC-delta-3	phospholipase C delta 3	protein-coding
3319	chr1	15413651	15414500	+	0	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	4187	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
37276	chr11	14681971	14682330	+	0	NA	intron (NM_001363569, intron 1 of 15)	Tigger2a|DNA|TcMar-Tigger	38346	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
120417	chr19	43826801	43827630	+	0	NA	promoter-TSS (NM_181845)	promoter-TSS (NM_181845)	-106	NM_001297752	284349		NM_181845	ENSG00000167637	ZNF283	HZF19|HZF41	zinc finger protein 283	protein-coding
169606	chr3	171245821	171246330	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-139316	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
223721	chr8	144461721	144463400	+	0	NA	promoter-TSS (NR_162109)	promoter-TSS (NR_162109)	-21	NR_162109	113218512		NR_162109		MIR10400	-	microRNA 10400	ncRNA
36473	chr11	6228421	6229080	+	0	NA	intron (NM_001098794, intron 1 of 11)	intron (NM_001098794, intron 1 of 11)	5886	NM_032127	84067		NM_032127	ENSG00000051009	FHIP1B	C11orf56|FAM160A2|FHIP	FHF complex subunit HOOK interacting protein 1B	protein-coding
48610	chr12	10360921	10361680	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-2469	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
180913	chr5	34242001	34242650	+	0	NA	intron (NR_146599, intron 1 of 11)	L1PA16|LINE|L1	2399	NR_146599	114899		NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and TNF related 3	protein-coding
210841	chr7	101015721	101016000	+	0	NA	intron (NM_001164462, intron 10 of 11)	intron (NM_001164462, intron 10 of 11)	1748	NR_120519	102724094		NR_120519	ENSG00000227053	MUC12-AS1	-	MUC12 antisense RNA 1	ncRNA
113322	chr19	8587751	8588650	+	0	NA	intron (NM_030957, intron 18 of 25)	AluSz|SINE|Alu	3996	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
2040	chr1	7752571	7753250	+	0	NA	intron (NM_001349613, intron 11 of 11)	intron (NM_001349613, intron 11 of 11)	-18386	NM_004781	9341		NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding
232020	chr9	133367251	133367780	+	0	NA	5' UTR (NM_001280791, exon 2 of 6)	5' UTR (NM_001280791, exon 2 of 6)	8545	NM_033161	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
85752	chr16	56739451	56739980	+	0	NA	intron (NM_014669, intron 1 of 21)	SVA_F|Retroposon|SVA	9586	NM_014669	9688		NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
125815	chr2	24083651	24085230	+	0	NA	promoter-TSS (NM_001206802)	promoter-TSS (NM_001206802)	-109	NM_001206802	9540		NM_004881	ENSG00000115129	TP53I3	PIG3	tumor protein p53 inducible protein 3	protein-coding
180282	chr5	1815471	1815630	+	0	NA	intron (NM_004553, intron 3 of 3)	intron (NM_004553, intron 3 of 3)	14143	NM_004553	4726		NM_004553	ENSG00000145494	NDUFS6	CI-13kA|CI-13kD-A|CI13KDA|MC1DN9	NADH:ubiquinone oxidoreductase subunit S6	protein-coding
196814	chr6	46126771	46127130	+	0	NA	intron (NM_001370650, intron 1 of 6)	intron (NM_001370650, intron 1 of 6)	2869	NM_001370650	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
141985	chr20	1389871	1390030	+	0	NA	intron (NM_000801, intron 2 of 4)	intron (NM_000801, intron 2 of 4)	3011	NR_106929	102465524		NR_106929	ENSG00000284436	MIR6869	hsa-mir-6869	microRNA 6869	ncRNA
5216	chr1	24982851	24983800	+	0	NA	Intergenic	Intergenic	-18315	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
102573	chr17	75869901	75870380	+	0	NA	Intergenic	Intergenic	8441	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
83366	chr16	25110901	25112400	+	0	NA	promoter-TSS (NM_016309)	promoter-TSS (NM_016309)	-92	NM_016309	51451		NM_016015	ENSG00000205629	LCMT1	CGI-68|LCMT|PPMT1	leucine carboxyl methyltransferase 1	protein-coding
87640	chr16	74559051	74559550	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluJo|SINE|Alu	47814	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
187050	chr5	139928121	139928580	+	0	NA	intron (NM_013981, intron 1 of 9)	intron (NM_013981, intron 1 of 9)	114949	NM_004883	9542		NM_004883	ENSG00000158458	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
28294	chr10	46094971	46095430	+	0	NA	Intergenic	LTR14A|LTR|ERVK	-14295	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
172481	chr4	2172251	2172350	+	0	NA	intron (NM_181808, intron 11 of 25)	LTR06|LTR|ERV1	69821	NM_001303143	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
74704	chr15	63044601	63044800	+	0	NA	intron (NM_001018005, intron 2 of 9)	intron (NM_001018005, intron 2 of 9)	1953	NM_001018004	7168		NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA	tropomyosin 1	protein-coding
186326	chr5	134632051	134633230	+	0	NA	intron (NM_001033503, intron 1 of 7)	CpG	188	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
129300	chr2	68515951	68516730	+	0	NA	intron (NM_173545, intron 5 of 9)	intron (NM_173545, intron 5 of 9)	48755	NM_173545	200558		NM_173545	ENSG00000169621	APLF	APFL|C2orf13|PALF|Xip1|ZCCHH1	aprataxin and PNKP like factor	protein-coding
53285	chr12	64390071	64391250	+	0	NA	promoter-TSS (NM_001170633)	promoter-TSS (NM_001170633)	98	NM_001170633	115749		NM_001099676	ENSG00000185306	C12orf56	-	chromosome 12 open reading frame 56	protein-coding
79761	chr16	1360421	1360980	+	0	NA	intron (NM_032520, intron 3 of 10)	MER1B|DNA|hAT-Charlie	8769	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
183495	chr5	79277401	79277800	+	0	NA	intron (NM_152405, intron 1 of 10)	AluJb|SINE|Alu	41469	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
65335	chr14	50224521	50225080	+	0	NA	intron (NM_006939, intron 1 of 22)	AluJr|SINE|Alu	6778	NM_006939	6655		NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
44829	chr11	114060401	114061750	+	0	NA	intron (NM_001018011, intron 1 of 6)	CpG	568	NM_001018011	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
144055	chr20	33666071	33667500	+	0	NA	promoter-TSS (NM_001024675)	promoter-TSS (NM_001024675)	-158	NM_001024675	170487		NM_001024675	ENSG00000288649	ACTL10	C20orf134|dJ63M2.2	actin like 10	protein-coding
104277	chr17	80819621	80820080	+	0	NA	intron (NM_020761, intron 7 of 33)	MER77B|LTR|ERVL	-14218	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
148915	chr21	9070301	9070850	+	0	NA	intron (NR_038328, intron 2 of 3)	intron (NR_038328, intron 2 of 3)	59186	NR_038327	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
234279	chrX	13506571	13506800	+	0	NA	Intergenic	Intergenic	-62916	NM_015507	25975		NM_015507	ENSG00000198759	EGFL6	MAEG|W80	EGF like domain multiple 6	protein-coding
145453	chr20	43655601	43655800	+	0	NA	Intergenic	Intergenic	-11319	NM_001278610	4605		NM_002466	ENSG00000101057	MYBL2	B-MYB|BMYB	MYB proto-oncogene like 2	protein-coding
67802	chr14	73769551	73769650	+	0	NA	intron (NM_001043318, intron 1 of 11)	AluSx4|SINE|Alu	-9297	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
107120	chr18	35075221	35075480	+	0	NA	intron (NR_046177, intron 2 of 6)	intron (NR_046177, intron 2 of 6)	33937	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
35874	chr11	2390501	2392130	+	0	NA	intron (NM_004356, intron 2 of 7)	intron (NM_004356, intron 2 of 7)	-9435	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
207626	chr7	45006871	45007230	+	0	NA	intron (NM_001167934, intron 1 of 8)	intron (NM_001167934, intron 1 of 8)	6849	NM_001363459	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
228508	chr9	100324321	100325130	+	0	NA	intron (NM_001161584, intron 9 of 14)	intron (NM_001161584, intron 9 of 14)	27846	NM_001161584	54881		NM_017746	ENSG00000136891	TEX10	Ipi1|bA208F1.2	testis expressed 10	protein-coding
233308	chr9	137408501	137408700	+	0	NA	intron (NM_017820, intron 1 of 21)	intron (NM_017820, intron 1 of 21)	14562	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
135678	chr2	168594921	168595180	+	0	NA	intron (NM_203463, intron 3 of 9)	intron (NM_203463, intron 3 of 9)	12107	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
61910	chr13	77558771	77559130	+	0	NA	intron (NM_003843, intron 3 of 31)	intron (NM_003843, intron 3 of 31)	23244	NM_144777	8796		NM_003843	ENSG00000136155	SCEL	-	sciellin	protein-coding
225583	chr9	36124971	36125530	+	0	NA	TTS (NM_001316345)	TTS (NM_001316345)	-11286	NR_104638	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
3700	chr1	16565421	16565680	+	0	NA	intron (NM_017940, intron 27 of 28)	intron (NM_017940, intron 27 of 28)	16636	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
204074	chr7	2052471	2052630	+	0	NA	intron (NM_001304524, intron 10 of 16)	intron (NM_001304524, intron 10 of 16)	36502	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
122718	chr19	49984851	49985150	+	0	NA	intron (NM_001308420, intron 12 of 12)	intron (NM_001308420, intron 12 of 12)	15336	NM_001348364	400709		NM_001348364	ENSG00000161643	SIGLEC16	SIGLECP16|Siglec-P16	sialic acid binding Ig like lectin 16	protein-coding
97337	chr17	43273521	43273900	+	0	NA	Intergenic	CpG	4458	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
18219	chr1	161018051	161018450	+	0	NA	intron (NM_001382733, intron 1 of 9)	intron (NM_001382733, intron 1 of 9)	2902	NM_001348091	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
163225	chr3	50256951	50257650	+	0	NA	intron (NM_002070, intron 7 of 8)	intron (NM_002070, intron 7 of 8)	10071	NR_110702	101928931		NR_110702		SEMA3B-AS1	-	SEMA3B antisense RNA 1 (head to head)	ncRNA
178464	chr4	148323251	148323630	+	0	NA	intron (NR_148974, intron 2 of 6)	L1PA2|LINE|L1	118974	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
143104	chr20	23356871	23357030	+	0	NA	non-coding (NR_109884, exon 3 of 3)	non-coding (NR_109884, exon 3 of 3)	1177	NR_109884	100505683		NR_109884	ENSG00000232645	LINC01431	-	long intergenic non-protein coding RNA 1431	ncRNA
41468	chr11	66131871	66132480	+	0	NA	intron (NM_018026, intron 1 of 23)	THE1D|LTR|ERVL-MaLR	61903	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
139426	chr2	222840251	222840350	+	0	NA	Intergenic	Intergenic	-20736	NM_203372	2181		NM_004457	ENSG00000123983	ACSL3	ACS3|FACL3|LACS 3|LACS3|PRO2194	acyl-CoA synthetase long chain family member 3	protein-coding
96671	chr17	40820271	40820630	+	0	NA	intron (NM_001379366, intron 3 of 7)	intron (NM_001379366, intron 3 of 7)	1265	NR_160886	147184		NM_145274	ENSG00000167920	KRT10-AS1	TMEM99	KRT10 antisense RNA 1	ncRNA
174992	chr4	49709241	49710200	+	0	NA	Intergenic	SAR|Satellite|Satellite	723078	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
68713	chr14	90679101	90679300	+	0	NA	intron (NM_001010854, intron 8 of 19)	intron (NM_001010854, intron 8 of 19)	-18133	NR_135190	105370622		NR_135190	ENSG00000258716	LOC105370622	-	uncharacterized LOC105370622	ncRNA
24550	chr1	244859621	244860330	+	0	NA	intron (NM_031844, intron 4 of 13)	FLAM_C|SINE|Alu	4550	NM_004501	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
41100	chr11	65536021	65536450	+	0	NA	intron (NM_020680, intron 11 of 17)	intron (NM_020680, intron 11 of 17)	11152	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
12617	chr1	109098201	109098600	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1793	NR_003023	677766		NR_003023	ENSG00000278249	SCARNA2	HBII-382|mgU2-25/61	small Cajal body-specific RNA 2	ncRNA
60676	chr13	43087921	43088480	+	0	NA	intron (NM_013238, intron 5 of 5)	intron (NM_013238, intron 5 of 5)	-24965	NR_047013	100874159		NR_047013		LINC00400	-	long intergenic non-protein coding RNA 400	ncRNA
104026	chr17	80123851	80123950	+	0	NA	Intergenic	Intergenic	22319	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
76433	chr15	74797371	74797880	+	0	NA	intron (NM_001354988, intron 3 of 14)	L1ME3A|LINE|L1	-8868	NR_039738	100616183		NR_039738	ENSG00000264386	MIR4513	-	microRNA 4513	ncRNA
77236	chr15	81292111	81292880	+	0	NA	intron (NM_172217, intron 11 of 18)	intron (NM_172217, intron 11 of 18)	-4475	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
87011	chr16	68247171	68247580	+	0	NA	intron (NM_001363551, intron 1 of 5)	MIRb|SINE|MIR	2002	NM_012320	23659		NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	phospholipase A2 group XV	protein-coding
181562	chr5	43138251	43138580	+	0	NA	intron (NM_001330716, intron 3 of 7)	AluSp|SINE|Alu	16850	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
195710	chr6	38824271	38824430	+	0	NA	intron (NM_001371, intron 27 of 91)	intron (NM_001371, intron 27 of 91)	109039	NM_001206927	1769		NM_001371	ENSG00000124721	DNAH8	ATPase|SPGF46|hdhc9	dynein axonemal heavy chain 8	protein-coding
130455	chr2	85439471	85439630	+	0	NA	Intergenic	L2|LINE|L2	20619	NM_201594								
36060	chr11	2952051	2952150	+	0	NA	intron (NM_001369382, intron 13 of 15).2	intron (NM_001369382, intron 13 of 15).2	11793	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
107674	chr18	49238501	49238700	+	0	NA	intron (NM_001374431, intron 13 of 16)	L2b|LINE|L2	-188832	NR_039898	100616420		NR_039898	ENSG00000263849	MIR4744	-	microRNA 4744	ncRNA
209862	chr7	90400601	90400800	+	0	NA	Intergenic	L1MA4|LINE|L1	-2761	NM_012129	9069		NM_012129	ENSG00000157224	CLDN12	-	claudin 12	protein-coding
97139	chr17	42553171	42553480	+	0	NA	non-coding (NR_144402, exon 1 of 1)	non-coding (NR_144402, exon 1 of 1)	402	NM_000413	3292		NM_000413	ENSG00000108786	HSD17B1	17-beta-HSD|20-alpha-HSD|E2DH|EDH17B2|EDHB17|HSD17|SDR28C1	hydroxysteroid 17-beta dehydrogenase 1	protein-coding
224188	chr9	5432871	5433030	+	0	NA	intron (NM_018465, intron 2 of 5)	SVA_A|Retroposon|SVA	4975	NM_018465	55848		NM_018465	ENSG00000107020	PLGRKT	AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT)	plasminogen receptor with a C-terminal lysine	protein-coding
66547	chr14	61889621	61890300	+	0	NA	intron (NM_001367657, intron 2 of 6)	MER31B|LTR|ERV1	-37735	NM_001367663	83851		NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r	synaptotagmin 16	protein-coding
91745	chr17	6751651	6752330	+	0	NA	Intergenic	AluJr|SINE|Alu	-3457	NM_001353135	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
179836	chr5	477601	478080	+	0	NA	non-coding (NR_125375, exon 5 of 7)	non-coding (NR_125375, exon 5 of 7)	4604	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
239474	chrY	56733671	56734150	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-220345	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
218177	chr8	41970971	41971820	+	0	NA	intron (NM_001305878, intron 8 of 13)	L2a|LINE|L2	-74654	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
70687	chr14	103100271	103100430	+	0	NA	exon (NM_001077594, exon 1 of 11)	exon (NM_001077594, exon 1 of 11)	206	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
36095	chr11	3021071	3021650	+	0	NA	intron (NR_165428, intron 10 of 22)	intron (NR_165428, intron 10 of 22)	-8034	NR_046580	100852407		NR_046580	ENSG00000247473	CARS1-AS1	CARS-AS1	CARS1 antisense RNA 1	ncRNA
2863	chr1	11320101	11320530	+	0	NA	Intergenic	Intergenic	47117	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
52431	chr12	55827251	55827900	+	0	NA	exon (NM_032364, exon 2 of 7)	exon (NM_032364, exon 2 of 7)	-2033	NR_036479	440104		NM_001013700	ENSG00000293491	TMEM198B	-	transmembrane protein 198B (pseudogene)	pseudo
101645	chr17	68252201	68252730	+	0	NA	intron (NR_144442, intron 4 of 6)	intron (NR_144442, intron 4 of 6)	4422	NM_016627	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
51893	chr12	53568201	53568400	+	0	NA	intron (NR_159377, intron 2 of 14)	intron (NR_159377, intron 2 of 14)	54316	NR_046221	100652999		NR_046221	ENSG00000257550	LOC100652999	-	uncharacterized LOC100652999	ncRNA
108448	chr18	70183251	70183750	+	0	NA	intron (NM_173630, intron 10 of 48)	intron (NM_173630, intron 10 of 48)	22187	NM_001318520	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
165619	chr3	101690751	101691450	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-4382	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
32466	chr10	102649951	102650130	+	0	NA	intron (NM_001345950, intron 1 of 4)	intron (NM_001345950, intron 1 of 4)	5545	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
51922	chr12	53697301	53697930	+	0	NA	Intergenic	Intergenic	-21285	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
127518	chr2	42307671	42308030	+	0	NA	intron (NM_019063, intron 17 of 22)	AluSq2|SINE|Alu	52188	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
179511	chr4	184742051	184742150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8004	NR_104593	79682		NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
226869	chr9	78106651	78107100	+	0	NA	Intergenic	AluSx3|SINE|Alu	-75064	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
1076	chr1	1922871	1923150	+	0	NA	exon (NM_001304360, exon 37 of 39)	exon (NM_001304360, exon 37 of 39)	-3731	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
229884	chr9	126503201	126503600	+	0	NA	3' UTR (NM_033446, exon 10 of 10)	3' UTR (NM_033446, exon 10 of 10)	-92896	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
49336	chr12	22045921	22047080	+	0	NA	exon (NM_018686, exon 1 of 8)	exon (NM_018686, exon 1 of 8)	282	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
166231	chr3	112126271	112126880	+	0	NA	intron (NM_001190259, intron 4 of 5)	L2b|LINE|L2	6673	NM_152785	257144		NM_152785	ENSG00000174500	GCSAM	GCAT2|GCET2|HGAL	germinal center associated signaling and motility	protein-coding
165787	chr3	105793221	105793480	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	74241	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
210223	chr7	99328471	99328830	+	0	NA	intron (NM_001190996, intron 1 of 9)	intron (NM_001190996, intron 1 of 9)	2752	NM_006409	10552		NM_006409	ENSG00000241685	ARPC1A	Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L	actin related protein 2/3 complex subunit 1A	protein-coding
107773	chr18	51029651	51031480	+	0	NA	5' UTR (NM_005359, exon 1 of 12)	5' UTR (NM_005359, exon 1 of 12)	352	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
195567	chr6	37496201	37496400	+	0	NA	intron (NM_138493, intron 1 of 3)	AluSz|SINE|Alu	3593	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
175389	chr4	70734121	70735270	+	0	NA	intron (NM_001345840, intron 1 of 13)	intron (NM_001345840, intron 1 of 13)	285	NM_001345840	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
85272	chr16	48576701	48577100	+	0	NA	intron (NM_153029, intron 1 of 6)	intron (NM_153029, intron 1 of 6)	33280	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
230271	chr9	127919171	127919800	+	0	NA	Intergenic	Intergenic	-2444	NM_175039	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
210347	chr7	99554171	99554930	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-2436	NM_145111	221786		NM_145111	ENSG00000221909	FAM200A	C7orf38	family with sequence similarity 200 member A	protein-coding
188678	chr5	157273001	157273600	+	0	NA	intron (NM_014376, intron 1 of 30)	MIR3|SINE|MIR	3976	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
184156	chr5	95644201	95644830	+	0	NA	Intergenic	Intergenic	-2262	NM_001375394	317671		NM_173362	ENSG00000175449	RFESD	-	Rieske Fe-S domain containing	protein-coding
96869	chr17	42065201	42065600	+	0	NA	intron (NM_001378270, intron 1 of 8)	intron (NM_001378270, intron 1 of 8)	-14799	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
181475	chr5	42756601	42757300	+	0	NA	intron (NM_001134848, intron 1 of 8)	intron (NM_001134848, intron 1 of 8)	132	NM_001134848	100129792		NM_001134848	ENSG00000198865	CCDC152	CH5400	coiled-coil domain containing 152	protein-coding
179497	chr4	184642451	184642750	+	0	NA	intron (NM_032991, intron 1 of 6)	L1MC1|LINE|L1	6847	NM_004346	836		NM_004346	ENSG00000164305	CASP3	CPP32|CPP32B|SCA-1	caspase 3	protein-coding
200758	chr6	137818271	137819050	+	0	NA	Intergenic	Intergenic	-48599	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
238745	chrX	154327051	154327850	+	0	NA	intron (NM_001145933, intron 10 of 12)	intron (NM_001145933, intron 10 of 12)	22280	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
177699	chr4	121938421	121939230	+	0	NA	intron (NM_001366479, intron 1 of 10)	intron (NM_001366479, intron 1 of 10)	-5712	NM_003305	7222		NM_003305	ENSG00000138741	TRPC3	SCA41|TRP3	transient receptor potential cation channel subfamily C member 3	protein-coding
31664	chr10	97422821	97423630	+	0	NA	intron (NR_157582, intron 1 of 1)	intron (NR_157582, intron 1 of 1)	2832	NR_157582	644215		NR_157582		LOC644215	-	uncharacterized LOC644215	ncRNA
198893	chr6	109490821	109491830	+	0	NA	Intergenic	Intergenic	-8088	NM_001164313	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
162929	chr3	49443751	49444630	+	0	NA	Intergenic	LTR23|LTR|ERV1	-14866	NM_032316	84276		NM_032316	ENSG00000145029	NICN1	-	nicolin 1, tubulin polyglutamylase complex subunit	protein-coding
4183	chr1	19430201	19430400	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	53995	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
214849	chr7	151313851	151314280	+	0	NA	Intergenic	Intergenic	-27747	NM_001385355	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
222394	chr8	134039351	134039630	+	0	NA	Intergenic	L1PREC2|LINE|L1	152994	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
12952	chr1	110872351	110873330	+	0	NA	promoter-TSS (NM_001320638)	promoter-TSS (NM_001320638)	-260	NM_001320638	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
19735	chr1	181140851	181141750	+	0	NA	Intergenic	Intergenic	-33184	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
187444	chr5	142111651	142111750	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	2921	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
2394	chr1	9537101	9537580	+	0	NA	Intergenic	AluSx|SINE|Alu	-2125	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
33042	chr10	110849721	110850500	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	20794	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
89200	chr16	88588501	88589880	+	0	NA	intron (NM_001294340, intron 4 of 18)	L1MB8|LINE|L1	18787	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
178008	chr4	139306371	139306730	+	0	NA	intron (NM_057175, intron 1 of 19)	intron (NM_057175, intron 1 of 19)	-3999	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
174485	chr4	39933901	39934200	+	0	NA	intron (NM_001100399, intron 2 of 32)	LTR67B|LTR|ERVL	43861	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
88434	chr16	84758771	84759530	+	0	NA	intron (NM_005153, intron 5 of 13)	intron (NM_005153, intron 5 of 13)	59150	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
175083	chr4	54099571	54100100	+	0	NA	promoter-TSS (NM_133267)	promoter-TSS (NM_133267)	-328	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
143	chr1	521251	521830	+	0	NA	Intergenic	Intergenic	-26095	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
142051	chr20	1803421	1803750	+	0	NA	Intergenic	CpG	-23839	NR_037142	100289473		NR_037142	ENSG00000293374	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
119128	chr19	39365821	39366080	+	0	NA	intron (NM_001384588, intron 4 of 13)	AluSz|SINE|Alu	23529	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
131141	chr2	91507001	91507400	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	152749	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
6384	chr1	27888181	27888930	+	0	NA	Intergenic	AluSp|SINE|Alu	16011	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
160925	chr3	36874351	36874650	+	0	NA	intron (NM_014831, intron 7 of 22)	intron (NM_014831, intron 7 of 22)	-52000	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
10420	chr1	65423051	65423430	+	0	NA	intron (NM_001198681, intron 2 of 4)	L2c|LINE|L2	2524	NM_001198681	54741		NM_017526	ENSG00000213625	LEPROT	LEPR|OB-RGRP|OBRGRP|VPS55	leptin receptor overlapping transcript	protein-coding
174618	chr4	40298521	40299000	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-8425	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
84787	chr16	31029971	31030400	+	0	NA	Intergenic	AluJb|SINE|Alu	-2910	NM_001272096	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
25794	chr10	11175301	11176300	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	10770	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
37756	chr11	31994871	31995250	+	0	NA	Intergenic	Intergenic	46258	NR_120526	100506675		NR_120526	ENSG00000254584	LINC03031	-	long intergenic non-protein coding RNA 3031	ncRNA
33554	chr10	119305701	119307050	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	-71597	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
152050	chr22	19607321	19607850	+	0	NA	Intergenic	Intergenic	-40746	NR_024381	150185		NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
188351	chr5	151686721	151687080	+	0	NA	promoter-TSS (NM_001309444)	promoter-TSS (NM_001309444)	15	NM_001309444	6678		NM_003118	ENSG00000113140	SPARC	BM-40|OI17|ON|ONT	secreted protein acidic and cysteine rich	protein-coding
75834	chr15	69459671	69460100	+	0	NA	Intergenic	MIRc|SINE|MIR	7067	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
162194	chr3	47003751	47003850	+	0	NA	intron (NM_001365116, intron 34 of 52)	intron (NM_001365116, intron 34 of 52)	-7742	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
88252	chr16	82627251	82627950	+	0	NA	intron (NM_001220490, intron 1 of 12)	CpG	631	NM_001220492	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
196081	chr6	42292021	42292680	+	0	NA	intron (NM_033502, intron 4 of 17)	Tigger15a|DNA|TcMar-Tigger	-74489	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
215470	chr7	158330021	158330480	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	202563	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
234246	chrX	13089951	13090550	+	0	NA	Intergenic	Intergenic	-45630	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
164388	chr3	58320821	58321300	+	0	NA	TTS (NM_001348715)	TTS (NM_001348715)	-11830	NM_001349539	54899		NM_017771	ENSG00000168297	PXK	MONAKA|SLOB	PX domain containing serine/threonine kinase like	protein-coding
75017	chr15	64044501	64045080	+	0	NA	intron (NM_014326, intron 1 of 11)	intron (NM_014326, intron 1 of 11)	1695	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
49907	chr12	39605571	39605950	+	0	NA	intron (NM_005164, intron 3 of 9)	intron (NM_005164, intron 3 of 9)	14043	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
132459	chr2	105869021	105869630	+	0	NA	intron (NM_001004722, intron 3 of 3)	MIRb|SINE|MIR	17478	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
85625	chr16	54285451	54285550	+	0	NA	exon (NM_024336, exon 2 of 4)	exon (NM_024336, exon 2 of 4)	1287	NM_024336	79191		NM_024336	ENSG00000177508	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
239102	chrY	11014351	11014530	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1103642	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
202457	chr6	158086501	158086700	+	0	NA	intron (NM_003898, intron 22 of 26)	intron (NM_003898, intron 22 of 26)	69507	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
65213	chr14	49772571	49772930	+	0	NA	intron (NM_014315, intron 2 of 12)	AluSx1|SINE|Alu	4597	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
183213	chr5	76181151	76181880	+	0	NA	intron (NM_014979, intron 2 of 12)	MSTA|LTR|ERVL-MaLR	98132	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
59776	chr13	30155401	30155600	+	0	NA	Intergenic	Intergenic	-2426	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
114824	chr19	13817501	13818630	+	0	NA	intron (NM_023072, intron 8 of 12)	(GCCCC)n|Simple_repeat|Simple_repeat	18294	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
53496	chr12	66300771	66301300	+	0	NA	Intergenic	L2|LINE|L2	-1458	NM_001370285	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
56758	chr12	120154171	120154330	+	0	NA	intron (NM_006836, intron 31 of 57)	intron (NM_006836, intron 31 of 57)	1249	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
62575	chr13	99978451	99978750	+	0	NA	Intergenic	Intergenic	-3184	NM_007129	7546		NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
44595	chr11	108458351	108458450	+	0	NA	intron (NR_147053, intron 3 of 12)	intron (NR_147053, intron 3 of 12)	9129	NM_001330368	160140		NM_152587	ENSG00000166323	C11orf65	MFI	chromosome 11 open reading frame 65	protein-coding
226735	chr9	75893701	75893900	+	0	NA	intron (NM_006200, intron 1 of 20)	intron (NM_006200, intron 1 of 20)	3127	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
183982	chr5	88830651	88830750	+	0	NA	intron (NM_001364330, intron 2 of 11)	intron (NM_001364330, intron 2 of 11)	-3512	NM_001364341	4208		NM_002397	ENSG00000081189	MEF2C	C5DELq14.3|DEL5q14.3|NEDHSIL	myocyte enhancer factor 2C	protein-coding
11711	chr1	91868701	91869100	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	17251	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
15719	chr1	151024121	151024980	+	0	NA	intron (NM_001303243, intron 3 of 5)	intron (NM_001303243, intron 3 of 5)	-12036	NM_138278	149428		NM_138278	ENSG00000163141	BNIPL	BNIP-S|BNIP-Salpha|BNIP-Sbeta|BNIPL-1|BNIPL-2|BNIPL1|BNIPL2|BNIPS|PP753	BCL2 interacting protein like	protein-coding
151762	chr22	17984171	17984550	+	0	NA	intron (NM_015241, intron 1 of 31)	MIRb|SINE|MIR	-3399	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
190872	chr6	2196121	2196400	+	0	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	-20269	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
126107	chr2	25980051	25980350	+	0	NA	intron (NM_002254, intron 1 of 7)	intron (NM_002254, intron 1 of 7)	2297	NM_002254	3797		NM_002254	ENSG00000084731	KIF3C	-	kinesin family member 3C	protein-coding
69117	chr14	92522071	92522230	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	8369	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
141492	chr2	241105071	241105900	+	0	NA	TTS (NM_001252122)	TTS (NM_001252122)	-3153	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
196200	chr6	42745021	42748130	+	0	NA	promoter-TSS (NM_003192)	promoter-TSS (NM_003192)	-412	NM_001318819	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
205859	chr7	24962971	24963630	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	16878	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
135857	chr2	170843651	170843950	+	0	NA	intron (NM_000817, intron 6 of 16)	Plat_L3|LINE|CR1	26913	NM_000817	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
48041	chr12	6963421	6964180	+	0	NA	promoter-TSS (NR_029682)	promoter-TSS (NR_029682)	101	NR_029779	406985		NR_029779	ENSG00000207713	MIR200C	MIRN200C|mir-200c	microRNA 200c	ncRNA
231991	chr9	133342071	133342230	+	0	NA	3' UTR (NM_181491, exon 4 of 4)	3' UTR (NM_181491, exon 4 of 4)	-5962	NM_006753	6838		NM_006753	ENSG00000148296	SURF6	RRP14	surfeit 6	protein-coding
116986	chr19	18887701	18888380	+	0	NA	intron (NM_021267, intron 2 of 7)	intron (NM_021267, intron 2 of 7)	8118	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
44560	chr11	108216851	108217800	+	0	NA	intron (NM_001321307, intron 1 of 17)	MER6A|DNA|TcMar-Tigger	5313	NM_001321307	4863		NM_002519	ENSG00000149308	NPAT	E14|E14/NPAT|p220	nuclear protein, coactivator of histone transcription	protein-coding
21458	chr1	205524001	205524680	+	0	NA	exon (NM_002596, exon 4 of 16)	exon (NM_002596, exon 4 of 16)	19671	NM_212502	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
124599	chr2	868401	869750	+	0	NA	promoter-TSS (NR_033880)	promoter-TSS (NR_033880)	-649	NR_033880	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
42885	chr11	73357171	73357330	+	0	NA	exon (NM_014786, exon 9 of 21)	exon (NM_014786, exon 9 of 21)	-19149	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
23974	chr1	235173901	235174730	+	0	NA	intron (NM_016374, intron 22 of 23)	AluSx3|SINE|Alu	-13065	NR_144491	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
5463	chr1	25627621	25628080	+	0	NA	intron (NM_020379, intron 1 of 11)	AluJb|SINE|Alu	11059	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
22260	chr1	212636401	212637250	+	0	NA	Intergenic	Intergenic	12351	NM_153606	149647		NM_153606	ENSG00000162771	GARIN4	FAM71A|GARI-L4|GARIL4	golgi associated RAB2 interactor family member 4	protein-coding
211481	chr7	105121601	105121800	+	0	NA	intron (NM_001350746, intron 14 of 14)	intron (NM_001350746, intron 14 of 14)	107495	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
25343	chr10	6271571	6271930	+	0	NA	Intergenic	Intergenic	-54794	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
183078	chr5	73692101	73692550	+	0	NA	intron (NM_001177693, intron 2 of 35)	intron (NM_001177693, intron 2 of 35)	66167	NM_001177693	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
96309	chr17	39963951	39964600	+	0	NA	intron (NM_178171, intron 1 of 11)	intron (NM_178171, intron 1 of 11)	1271	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
133325	chr2	113896851	113896950	+	0	NA	intron (NM_001277140, intron 1 of 11)	intron (NM_001277140, intron 1 of 11)	-5908	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128525	chr2	60754421	60754950	+	0	NA	Intergenic	AluSx|SINE|Alu	-1583	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
50268	chr12	46271801	46272150	+	0	NA	Intergenic	Intergenic	-2932	NM_001278388	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
136496	chr2	177232271	177232900	+	0	NA	intron (NM_001313902, intron 2 of 3)	intron (NM_001313902, intron 2 of 3)	19791	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
98728	chr17	48019171	48019330	+	0	NA	Intergenic	Intergenic	-13632	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
22295	chr1	212950271	212951250	+	0	NA	intron (NM_001136475, intron 1 of 6)	CpG	219	NM_024749	79805		NM_024749	ENSG00000143494	VASH2	-	vasohibin 2	protein-coding
140706	chr2	234335671	234336250	+	0	NA	Intergenic	Intergenic	118635	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
127040	chr2	37195071	37195400	+	0	NA	intron (NM_001032377, intron 1 of 8)	AluSx|SINE|Alu	852	NM_001032377	391365		NM_001032377	ENSG00000138068	SULT6B1	ST6B1	sulfotransferase family 6B member 1	protein-coding
222858	chr8	142669201	142670550	+	0	NA	promoter-TSS (NR_033343)	promoter-TSS (NR_033343)	92	NM_001077527	8629		NM_003724	ENSG00000234616	JRK	JH8|jerky	Jrk helix-turn-helix protein	protein-coding
134794	chr2	147867071	147867630	+	0	NA	intron (NM_001278579, intron 2 of 11)	intron (NM_001278579, intron 2 of 11)	22321	NM_001616	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
218411	chr8	47515021	47515280	+	0	NA	intron (NM_001352958, intron 10 of 21)	intron (NM_001352958, intron 10 of 21)	-138938	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
74930	chr15	63736321	63736780	+	0	NA	intron (NM_003922, intron 12 of 77)	HAL1|LINE|L1	97398	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
197994	chr6	90072721	90073380	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	178581	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
27063	chr10	27150351	27151030	+	0	NA	intron (NM_001253866, intron 1 of 17)	MER41B|LTR|ERV1	3694	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
19008	chr1	169601151	169601680	+	0	NA	intron (NM_003005, intron 10 of 16)	MIR3|SINE|MIR	-14934	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
229832	chr9	125763401	125763600	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	15317	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
88506	chr16	85304601	85305200	+	0	NA	Intergenic	MER90|LTR|ERV1	1425	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
78079	chr15	90224921	90225930	+	0	NA	exon (NM_001324034, exon 11 of 14)	exon (NM_001324034, exon 11 of 14)	8516	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
189396	chr5	172756721	172756980	+	0	NA	intron (NR_161233, intron 1 of 3)	intron (NR_161233, intron 1 of 3)	1347	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
218597	chr8	55939451	55939950	+	0	NA	intron (NM_002350, intron 1 of 12)	intron (NM_002350, intron 1 of 12)	-36845	NR_145767	109617001		NR_145767	ENSG00000199405	SNORA1B	-	small nucleolar RNA, H/ACA box 1B	snoRNA
85523	chr16	50801871	50802400	+	0	NA	TTS (NM_001378753)	TTS (NM_001378753)	-4537	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
20338	chr1	197774471	197776100	+	0	NA	non-coding (NR_125340, exon 1 of 20)	non-coding (NR_125340, exon 1 of 20)	195	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
18777	chr1	167515551	167515650	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	2929	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
44693	chr11	111449851	111449950	+	0	NA	Intergenic	Intergenic	-31714	NR_046085	100132078		NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
62673	chr13	102604701	102605200	+	0	NA	intron (NR_160411, intron 2 of 28)	intron (NR_160411, intron 2 of 28)	7964	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
225755	chr9	37187601	37188730	+	0	NA	intron (NM_001289119, intron 2 of 8)	AluJb|SINE|Alu	67567	NM_001289120	84186		NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
52330	chr12	54980121	54980980	+	0	NA	intron (NM_001136030, intron 1 of 10)	MamRep38|DNA|hAT	1381	NM_001098815	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
53850	chr12	69689171	69689430	+	0	NA	promoter-TSS (NM_152439)	promoter-TSS (NM_152439)	-23	NM_152439	144453		NM_032735	ENSG00000127325	BEST3	VMD2L3	bestrophin 3	protein-coding
6519	chr1	28551201	28551600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1617	NR_003109	54952		NM_017846	ENSG00000180098	TRNAU1AP	PRO1902|SECP43|TRSPAP1	tRNA selenocysteine 1 associated protein 1	protein-coding
182886	chr5	70036551	70036650	+	0	NA	intron (NM_022978, intron 2 of 2).5	(AC)n|Simple_repeat|Simple_repeat	11349	NM_021967	8293		NM_021967	ENSG00000172058	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A	protein-coding
30463	chr10	79144921	79145180	+	0	NA	intron (NM_020338, intron 3 of 24)	intron (NM_020338, intron 3 of 24)	76084	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
141504	chr2	241148051	241148150	+	0	NA	intron (NM_001252120, intron 2 of 18)	intron (NM_001252120, intron 2 of 18)	1372	NM_001252122	23178		NM_015148	ENSG00000115687	PASK	PASKIN|STK37	PAS domain containing serine/threonine kinase	protein-coding
109706	chr19	1060821	1061080	+	0	NA	intron (NM_019112, intron 40 of 46)	intron (NM_019112, intron 40 of 46)	-5009	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
136837	chr2	183077201	183077600	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-1347	NR_135688	142679		NM_080876	ENSG00000162999	DUSP19	DUSP17|LMWDSP3|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding
192249	chr6	20207851	20208330	+	0	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	4379	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
206839	chr7	37344271	37344430	+	0	NA	intron (NM_001206480, intron 1 of 21)	L1ME4b|LINE|L1	9318	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
70030	chr14	100099171	100099730	+	0	NA	intron (NM_016337, intron 3 of 13)	intron (NM_016337, intron 3 of 13)	10064	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
9161	chr1	45550321	45551580	+	0	NA	5' UTR (NM_153326, exon 1 of 9)	5' UTR (NM_153326, exon 1 of 9)	124	NM_006066	10327		NM_006066	ENSG00000117448	AKR1A1	ALDR1|ALR|ARM|DD3|HEL-S-6	aldo-keto reductase family 1 member A1	protein-coding
7909	chr1	37473901	37476600	+	0	NA	promoter-TSS (NR_038842)	promoter-TSS (NR_038842)	670	NM_001323550	80149		NM_025079	ENSG00000163874	ZC3H12A	MCPIP|MCPIP-1|MCPIP1|Reg1|dJ423B22.1	zinc finger CCCH-type containing 12A	protein-coding
221823	chr8	128049071	128049850	+	0	NA	TTS (NR_031612)	TTS (NR_031612)	308	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
98183	chr17	46104971	46105130	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSq2|SINE|Alu	87732	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
134693	chr2	144487951	144488250	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-31514	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
152707	chr22	21639551	21639850	+	0	NA	Intergenic	Intergenic	-2602	NM_022044	23753		NM_022044	ENSG00000128228	SDF2L1	-	stromal cell derived factor 2 like 1	protein-coding
45407	chr11	118348521	118348780	+	0	NA	intron (NM_000073, intron 1 of 6)	MER21C|LTR|ERVL	4306	NM_000073	917		NM_000073	ENSG00000160654	CD3G	CD3-GAMMA|CD3GAMMA|IMD17|T3G	CD3 gamma subunit of T-cell receptor complex	protein-coding
215863	chr8	7505101	7505300	+	0	NA	intron (NM_001040705, intron 1 of 1).3	HERVK-int|LTR|ERVK	9289	NM_001040705	503614		NM_001040705	ENSG00000198129	DEFB107B	HsT21816	defensin beta 107B	protein-coding
1625	chr1	3724051	3724800	+	0	NA	intron (NM_001204185, intron 6 of 12)	intron (NM_001204185, intron 6 of 12)	22346	NR_033712	57212		NM_207306	ENSG00000293478	GFOD3P	KIAA0495|PDAM|TP73-AS1	Gfo/Idh/MocA-like oxidoreductase domain containing 3, pseudogene	pseudo
189368	chr5	172637251	172637430	+	0	NA	Intergenic	Intergenic	-3923	NM_001308178	54492		NM_001142651	ENSG00000214357	NEURL1B	NEURL3|RNF67B|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
206765	chr7	36706721	36706980	+	0	NA	intron (NM_001177506, intron 1 of 21)	Tigger1|DNA|TcMar-Tigger	17644	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
69159	chr14	92584321	92585010	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	8431	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
110920	chr19	2778051	2778580	+	0	NA	intron (NM_003021, intron 1 of 11)	intron (NM_003021, intron 1 of 11)	4958	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
182507	chr5	65033501	65033700	+	0	NA	Intergenic	Intergenic	264670	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
198771	chr6	108835171	108835580	+	0	NA	Intergenic	Intergenic	-13041	NM_001286609	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
33335	chr10	116741121	116741380	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	1316	NM_025015	259217		NM_025015	ENSG00000165868	HSPA12A	-	heat shock protein family A (Hsp70) member 12A	protein-coding
32855	chr10	110066301	110066830	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-58184	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
124179	chr19	56142751	56143350	+	0	NA	intron (NM_018337, intron 1 of 4)	intron (NM_018337, intron 1 of 4)	1763	NM_001253792	55311		NM_018337	ENSG00000167685	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
196302	chr6	43050221	43051400	+	0	NA	intron (NM_001374872, intron 4 of 25)	intron (NM_001374872, intron 4 of 25)	3041	NM_001374872	9820		NM_014780	ENSG00000044090	CUL7	3M1|CUL-7|KIAA0076|dJ20C7.5	cullin 7	protein-coding
71051	chr14	104796501	104798400	+	0	NA	Intergenic	Intergenic	-1702	NM_001014432	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
75059	chr15	64229201	64229950	+	0	NA	intron (NM_001329607, intron 4 of 11)	MLT1K|LTR|ERVL-MaLR	-66553	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
192027	chr6	16436461	16437340	+	0	NA	intron (NM_000332, intron 7 of 8)	L2a|LINE|L2	198313	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
190245	chr5	178624101	178624730	+	0	NA	intron (NM_020666, intron 1 of 12)	intron (NM_020666, intron 1 of 12)	2635	NM_020666	57396		NM_020666	ENSG00000113240	CLK4	-	CDC like kinase 4	protein-coding
107891	chr18	56655351	56655650	+	0	NA	intron (NM_001382485, intron 1 of 26)	AluJb|SINE|Alu	3803	NM_001382485	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
83281	chr16	24035021	24035730	+	0	NA	intron (NM_212535, intron 4 of 16)	intron (NM_212535, intron 4 of 16)	-167741	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
184203	chr5	95892801	95893250	+	0	NA	intron (NM_012081, intron 9 of 11)	intron (NM_012081, intron 9 of 11)	40793	NR_026936	202299		NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
15757	chr1	151157201	151157800	+	0	NA	intron (NM_001204848, intron 1 of 6)	intron (NM_001204848, intron 1 of 6)	851	NM_024575	79626		NM_024575	ENSG00000163154	TNFAIP8L2	TIPE2	TNF alpha induced protein 8 like 2	protein-coding
165251	chr3	73055401	73055700	+	0	NA	intron (NM_174907, intron 3 of 8)	intron (NM_174907, intron 3 of 8)	-6109	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
16023	chr1	152168001	152168200	+	0	NA	Intergenic	Intergenic	-8872	NM_001122965	126638		NM_152364	ENSG00000215853	RPTN	-	repetin	protein-coding
47786	chr12	6565221	6565780	+	0	NA	intron (NM_001258309, intron 5 of 16)	AluSx|SINE|Alu	2791	NM_001258309	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
27609	chr10	32894721	32895380	+	0	NA	Intergenic	LTR5A|LTR|ERVK	6422	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
43584	chr11	83115551	83116100	+	0	NA	Intergenic	Intergenic	-41306	NM_001346414	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
82612	chr16	18915001	18915400	+	0	NA	intron (NM_015092, intron 1 of 62)	AluSc|SINE|Alu	11208	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
64790	chr14	34856621	34857100	+	0	NA	intron (NM_013448, intron 3 of 26)	AluSq|SINE|Alu	-17331	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
42770	chr11	72745671	72746400	+	0	NA	intron (NM_001040118, intron 1 of 34)	intron (NM_001040118, intron 1 of 34)	6354	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
141165	chr2	239263571	239263930	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-41712	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
136468	chr2	177193071	177193500	+	0	NA	Intergenic	Intergenic	19126	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
10321	chr1	64891351	64892150	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	74799	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
173608	chr4	10828701	10829130	+	0	NA	Intergenic	L1PA2|LINE|L1	-144147	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
162574	chr3	48665251	48665980	+	0	NA	intron (NR_111921, intron 1 of 2)	AluSz|SINE|Alu	1847	NR_111921	102724368		NR_111921	ENSG00000228350	LINC02585	CELSR3-AS1	long intergenic non-protein coding RNA 2585	ncRNA
183934	chr5	87407751	87407850	+	0	NA	intron (NM_001239, intron 4 of 8)	MER5A|DNA|hAT-Charlie	5104	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
23627	chr1	230278851	230279150	+	0	NA	intron (NM_001291866, intron 15 of 15)	intron (NM_001291866, intron 15 of 15)	147332	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
128847	chr2	63850621	63851330	+	0	NA	intron (NM_001377529, intron 2 of 11)	L2b|LINE|L2	9079	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
93530	chr17	19037501	19038080	+	0	NA	intron (NM_001330148, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	9167	NM_006613	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
63874	chr14	21736771	21736930	+	0	NA	Intergenic	Intergenic	-65833	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
197129	chr6	57432801	57433400	+	0	NA	intron (NM_000947, intron 7 of 13)	MER58A|DNA|hAT-Charlie	42968	NR_036097	100422884		NR_036097	ENSG00000212017	MIR548U	-	microRNA 548u	ncRNA
90661	chr17	1686871	1687630	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2383	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
150408	chr21	42373321	42373580	+	0	NA	intron (NM_024022, intron 12 of 12)	intron (NM_024022, intron 12 of 12)	-6915	NM_003225	7031		NM_003225	ENSG00000160182	TFF1	BCEI|D21S21|HP1.A|HPS2|pNR-2|pS2	trefoil factor 1	protein-coding
9810	chr1	53837621	53839780	+	0	NA	promoter-TSS (NM_001168551)	promoter-TSS (NM_001168551)	-404	NM_001168551	55706		NM_018087	ENSG00000058804	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
173958	chr4	25925821	25926100	+	0	NA	intron (NM_001145432, intron 1 of 2)	intron (NM_001145432, intron 1 of 2)	11768	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
64765	chr14	34613971	34614130	+	0	NA	intron (NR_159357, intron 2 of 12)	AluSg7|SINE|Alu	16098	NR_159358	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
17385	chr1	156599571	156600150	+	0	NA	intron (NM_182679, intron 1 of 7)	intron (NM_182679, intron 1 of 7)	1619	NM_182679	54865		NM_015590	ENSG00000160818	GPATCH4	GPATC4	G-patch domain containing 4 (gene/pseudogene)	protein-coding
145947	chr20	46088221	46088580	+	0	NA	intron (NM_020967, intron 1 of 7)	intron (NM_020967, intron 1 of 7)	1562	NM_001348148	57727		NM_020967	ENSG00000124160	NCOA5	CIA|bA465L10.6	nuclear receptor coactivator 5	protein-coding
42250	chr11	68123251	68123550	+	0	NA	Intergenic	AluJb|SINE|Alu	-2012	NM_001376220	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
21684	chr1	206715871	206716600	+	0	NA	intron (NM_032960, intron 1 of 9)	L3|LINE|CR1	31330	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
167774	chr3	133038251	133038430	+	0	NA	promoter-TSS (NM_001136469)	promoter-TSS (NM_001136469)	-51	NM_023943	66000		NM_023943	ENSG00000144868	TMEM108	CT124|RTLN	transmembrane protein 108	protein-coding
102342	chr17	75489151	75489650	+	0	NA	intron (NM_001321148, intron 7 of 30)	intron (NM_001321148, intron 7 of 30)	-9148	NR_106843	102466911		NR_106843	ENSG00000284595	MIR6785	hsa-mir-6785	microRNA 6785	ncRNA
216948	chr8	22981001	22981850	+	0	NA	Intergenic	Intergenic	-5826	NM_001160036	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
133541	chr2	120287201	120287400	+	0	NA	intron (NM_002881, intron 3 of 4)	intron (NM_002881, intron 3 of 4)	34448	NM_001369400	5899		NM_002881	ENSG00000144118	RALB	-	RAS like proto-oncogene B	protein-coding
128341	chr2	54725951	54726250	+	0	NA	intron (NM_001039753, intron 1 of 40)	intron (NM_001039753, intron 1 of 40)	1088	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
155975	chr22	39904851	39905250	+	0	NA	intron (NM_004810, intron 1 of 7)	L1MC5|LINE|L1	3966	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
30070	chr10	73871471	73871630	+	0	NA	intron (NR_160045, intron 1 of 17)	intron (NR_160045, intron 1 of 17)	3005	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
192276	chr6	20407951	20408200	+	0	NA	intron (NM_001243076, intron 1 of 6)	intron (NM_001243076, intron 1 of 6)	4396	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
57015	chr12	120625651	120626000	+	0	NA	Intergenic	Intergenic	-14794	NM_001033677	9478		NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
92482	chr17	8832751	8832930	+	0	NA	intron (NR_110865, intron 8 of 19)	intron (NR_110865, intron 8 of 19)	-33475	NM_152599	162387		NM_152599	ENSG00000185156	MFSD6L	-	major facilitator superfamily domain containing 6 like	protein-coding
71826	chr15	22172801	22173800	+	0	NA	Intergenic	Intergenic	5296	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
41527	chr11	66274101	66274700	+	0	NA	intron (NM_030981, intron 4 of 5)	MIRb|SINE|MIR	-3775	NM_182553	254263		NM_182553	ENSG00000174871	CNIH2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding
66666	chr14	63899751	63900650	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	47196	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
222677	chr8	141240821	141241550	+	0	NA	intron (NM_001286646, intron 2 of 8)	intron (NM_001286646, intron 2 of 8)	-12611	NM_001080431	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
95228	chr17	35266601	35266830	+	0	NA	3' UTR (NM_001330183, exon 4 of 4)	3' UTR (NM_001330183, exon 4 of 4)	23643	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
161745	chr3	44513501	44513700	+	0	NA	Intergenic	Intergenic	-2983	NM_001287349	285346		NM_001287349	ENSG00000178917	ZNF852	-	zinc finger protein 852	protein-coding
235717	chrX	48907201	48907800	+	0	NA	intron (NM_001282649, intron 1 of 2)	AluSc8|SINE|Alu	4146	NM_005660	7355		NM_005660	ENSG00000102100	SLC35A2	CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL	solute carrier family 35 member A2	protein-coding
105719	chr18	2708421	2709130	+	0	NA	intron (NM_015295, intron 17 of 47)	AluSq2|SINE|Alu	53049	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
81403	chr16	8087951	8088050	+	0	NA	Intergenic	Intergenic	501838	NR_110736	283953		NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
82435	chr16	16324871	16325230	+	0	NA	TTS (NR_106766).2	TTS (NR_106766).2	462	NR_106971	102465684		NR_106971	ENSG00000273613	MIR6511A4	MIR6511A-4|hsa-mir-6511a-4	microRNA 6511a-4	ncRNA
181066	chr5	36507371	36507650	+	0	NA	Intergenic	Intergenic	-98845	NM_001166696	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
134288	chr2	135874871	135875030	+	0	NA	intron (NM_005915, intron 1 of 16)	L1MB3|LINE|L1	1493	NM_005915	4175		NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
163467	chr3	50620251	50620980	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	3464	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
7932	chr1	37510071	37510430	+	0	NA	intron (NR_073091, intron 2 of 7)	AluSx|SINE|Alu	4516	NM_001270876	64769		NM_022756	ENSG00000163875	MEAF6	C1orf149|CENP-28|EAF6|NY-SAR-91	MYST/Esa1 associated factor 6	protein-coding
104522	chr17	81241371	81242350	+	0	NA	TTS (NM_001353403)	TTS (NM_001353403)	1946	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
151236	chr21	45282771	45283400	+	0	NA	intron (NM_133635, intron 3 of 8)	intron (NM_133635, intron 3 of 8)	4810	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
55570	chr12	106245371	106245930	+	0	NA	intron (NM_006825, intron 1 of 1)	AluSx|SINE|Alu	2370	NM_006825	10970		NM_006825	ENSG00000136026	CKAP4	CLIMP-63|CLIMP63|ERGIC-63|p63	cytoskeleton associated protein 4	protein-coding
47053	chr12	545071	545230	+	0	NA	intron (NM_173593, intron 5 of 19)	intron (NM_173593, intron 5 of 19)	41336	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
38039	chr11	35154471	35154630	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	-8400	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
146433	chr20	49620351	49620880	+	0	NA	Intergenic	Intergenic	-52478	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
82957	chr16	21913871	21914300	+	0	NA	Intergenic	AluY|SINE|Alu	-39276	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
76388	chr15	74619221	74619480	+	0	NA	intron (NM_001130028, intron 2 of 12)	intron (NM_001130028, intron 2 of 12)	3514	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
48884	chr12	12485721	12486180	+	0	NA	intron (NM_030640, intron 5 of 6)	AluYf1|SINE|Alu	76913	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
27470	chr10	32041371	32041530	+	0	NA	intron (NM_004521, intron 2 of 25)	intron (NM_004521, intron 2 of 25)	14975	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
90879	chr17	2381951	2382050	+	0	NA	TTS (NM_001098509)	TTS (NM_001098509)	19060	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
19173	chr1	171838651	171838950	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2698	NM_001350205	26052		NM_015569	ENSG00000197959	DNM3	Dyna III	dynamin 3	protein-coding
94200	chr17	28578571	28579350	+	0	NA	intron (NM_006461, intron 19 of 23)	intron (NM_006461, intron 19 of 23)	-2065	NM_005165	230		NM_005165	ENSG00000109107	ALDOC	ALDC	aldolase, fructose-bisphosphate C	protein-coding
187707	chr5	143381771	143381930	+	0	NA	intron (NR_157096, intron 1 of 7)	L1M1|LINE|L1	21433	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
105687	chr18	2661771	2661930	+	0	NA	intron (NM_015295, intron 1 of 47)	A-rich|Low_complexity|Low_complexity	6124	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
235689	chrX	48714611	48715430	+	0	NA	Intergenic	Intergenic	18286	NM_003173	6839		NM_003173	ENSG00000101945	SUV39H1	H3-K9-HMTase 1|KMT1A|MG44|SUV39H	SUV39H1 histone lysine methyltransferase	protein-coding
144636	chr20	35949051	35949350	+	0	NA	3' UTR (NM_016436, exon 18 of 18)	3' UTR (NM_016436, exon 18 of 18)	5302	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
167673	chr3	130012311	130012450	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	37660	NM_007117	7200		NM_007117	ENSG00000170893	TRH	Pro-TRH|TRF	thyrotropin releasing hormone	protein-coding
34970	chr11	498701	499500	+	0	NA	exon (NM_203387, exon 6 of 11)	exon (NM_203387, exon 6 of 11)	7668	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
157886	chr22	49735101	49735880	+	0	NA	Intergenic	Intergenic	-77971	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
219105	chr8	65941901	65942700	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	-72678	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
1677	chr1	3929651	3929830	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-10872	NR_040065	728716		NR_040065		LINC01346	-	long intergenic non-protein coding RNA 1346	ncRNA
224968	chr9	33073251	33073950	+	0	NA	exon (NM_018225, exon 2 of 12)	exon (NM_018225, exon 2 of 12)	3074	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
22486	chr1	221725001	221725300	+	0	NA	intron (NR_111940, intron 1 of 2)	(CCACAG)n|Simple_repeat|Simple_repeat	11750	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
107397	chr18	46099651	46099750	+	0	NA	intron (NM_001001937, intron 1 of 12)	AluJr|SINE|Alu	-1347	NM_001257335	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
119737	chr19	41266821	41267230	+	0	NA	intron (NM_001301016, intron 1 of 14)	MIRb|SINE|MIR	1944	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
237399	chrX	119577451	119578100	+	0	NA	intron (NM_181762, intron 3 of 4)	AluSq2|SINE|Alu	3212	NM_001282161	7319		NM_003336	ENSG00000077721	UBE2A	HHR6A|MRXS30|MRXSN|RAD6A|UBC2	ubiquitin conjugating enzyme E2 A	protein-coding
15277	chr1	149740201	149740600	+	0	NA	Intergenic	Intergenic	38191	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
26080	chr10	13109271	13109650	+	0	NA	intron (NM_001008212, intron 3 of 14)	intron (NM_001008212, intron 3 of 14)	9297	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
68574	chr14	89426871	89427030	+	0	NA	intron (NM_001085471, intron 1 of 6)	AluSx1|SINE|Alu	9596	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
98830	chr17	48416571	48417580	+	0	NA	intron (NM_001075099, intron 1 of 12)	intron (NM_001075099, intron 1 of 12)	13139	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
99787	chr17	51168271	51168630	+	0	NA	intron (NM_001198682, intron 3 of 3)	intron (NM_001198682, intron 3 of 3)	1728	NM_001018138	4831		NM_002512	ENSG00000243678	NME2	NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF	NME/NM23 nucleoside diphosphate kinase 2	protein-coding
120171	chr19	42250771	42251700	+	0	NA	intron (NM_001312656, intron 1 of 3)	intron (NM_001312656, intron 1 of 3)	2664	NM_001308402	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
235560	chrX	47284671	47284830	+	0	NA	Intergenic	AluSx1|SINE|Alu	51741	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
4722	chr1	23336251	23336830	+	0	NA	intron (NM_001102397, intron 3 of 9).2	AluY|SINE|Alu	7744	NM_001297622	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
69357	chr14	94001121	94002380	+	0	NA	intron (NR_024182, intron 6 of 8)	intron (NR_024182, intron 6 of 8)	4449	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
156118	chr22	40098151	40098530	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSx1|SINE|Alu	53523	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
116198	chr19	17476401	17476600	+	0	NA	intron (NM_198580, intron 1 of 11)	AluSx1|SINE|Alu	5976	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
76512	chr15	74994251	74994630	+	0	NA	Intergenic	Intergenic	-1123	NR_033660	192683		NM_138967	ENSG00000198794	SCAMP5	-	secretory carrier membrane protein 5	protein-coding
202943	chr6	160789421	160790080	+	0	NA	Intergenic	MER57A-int|LTR|ERV1	87506	NM_000301	5340		NM_000301	ENSG00000122194	PLG	HAE4	plasminogen	protein-coding
163838	chr3	52469651	52470150	+	0	NA	intron (NM_001276294, intron 3 of 13)	AluSz|SINE|Alu	14296	NM_001276294	11188		NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
65554	chr14	51933001	51933430	+	0	NA	intron (NM_053064, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	-14644	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
79142	chr16	240501	240700	+	0	NA	intron (NM_001284497, intron 1 of 12)	AluSz|SINE|Alu	5779	NM_001284497	83986		NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding
16393	chr1	154412751	154413250	+	0	NA	intron (NM_001206866, intron 1 of 6)	L1ME4b|LINE|L1	-6436	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
144114	chr20	33933451	33933780	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-60296	NM_007367	22913		NM_007367	ENSG00000125970	RALY	HNRPCL2|P542	RALY heterogeneous nuclear ribonucleoprotein	protein-coding
18257	chr1	161065751	161066080	+	0	NA	intron (NM_001025598, intron 1 of 11)	AluSz|SINE|Alu	3976	NM_181720	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
224996	chr9	33114801	33115250	+	0	NA	intron (NM_001378496, intron 3 of 4)	intron (NM_001378496, intron 3 of 4)	6333	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
147928	chr20	62918811	62920150	+	0	NA	intron (NM_022105, intron 1 of 5)	AluSq|SINE|Alu	7025	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
67362	chr14	69718871	69719130	+	0	NA	Intergenic	MIRb|SINE|MIR	-48142	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
110452	chr19	1993721	1994280	+	0	NA	intron (NM_017797, intron 2 of 8)	AluSx1|SINE|Alu	21714	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
53418	chr12	64780251	64780550	+	0	NA	promoter-TSS (NM_001330188)	promoter-TSS (NM_001330188)	-355	NM_001330188	23329		NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
14782	chr1	146076001	146076530	+	0	NA	intron (NM_001302371, intron 77 of 89)	(AC)n|Simple_repeat|Simple_repeat	23669	NR_125967	101928979		NR_125967		LINC01719	-	long intergenic non-protein coding RNA 1719	ncRNA
180234	chr5	1576901	1577130	+	0	NA	intron (NR_003263, intron 4 of 6)	intron (NR_003263, intron 4 of 6)	17516	NR_003263	728609		NR_003263	ENSG00000291055	SDHAP3	SDHACL|SDHAL	SDHA pseudogene 3	pseudo
150064	chr21	37392651	37393330	+	0	NA	intron (NM_001347723, intron 1 of 10)	MLT1A1|LTR|ERVL-MaLR	25433	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
183162	chr5	75176271	75176430	+	0	NA	intron (NM_001164443, intron 10 of 24)	L1PA4|LINE|L1	60528	NM_001372053	256006		NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
100818	chr17	64083771	64084680	+	0	NA	intron (NM_001433, intron 2 of 21)	intron (NM_001433, intron 2 of 21)	45919	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
216589	chr8	22040001	22040200	+	0	NA	Intergenic	Intergenic	-2653	NM_001304478	8822		NM_003867	ENSG00000158815	FGF17	FGF-13|FGF-17|HH20	fibroblast growth factor 17	protein-coding
12659	chr1	109268471	109268630	+	0	NA	intron (NM_001408, intron 17 of 33)	intron (NM_001408, intron 17 of 33)	14594	NM_001350237	84722		NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
10091	chr1	58896751	58896870	+	0	NA	intron (NR_034014, intron 3 of 3)	(GGGA)n|Simple_repeat|Simple_repeat	111659	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
168991	chr3	152416401	152416730	+	0	NA	intron (NM_207295, intron 3 of 8)	intron (NM_207295, intron 3 of 8)	-75575	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
157507	chr22	45333321	45333580	+	0	NA	intron (NR_146323, intron 9 of 11)	AluY|SINE|Alu	15007	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
136004	chr2	172422971	172423530	+	0	NA	Intergenic	Intergenic	-4086	NM_001316306	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
234318	chrX	13742551	13743250	+	0	NA	intron (NM_001330210, intron 6 of 23)	L1MC3|LINE|L1	8152	NM_003611	8481		NM_003611	ENSG00000046651	OFD1	71-7A|CXorf5|JBTS10|RP23|SGBS2	OFD1 centriole and centriolar satellite protein	protein-coding
8148	chr1	39396901	39397500	+	0	NA	intron (NM_012090, intron 52 of 92)	MER47A|DNA|TcMar-Tigger	-11873	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
65042	chr14	39184651	39185580	+	0	NA	Intergenic	AluJr4|SINE|Alu	9861	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
54294	chr12	89349901	89350400	+	0	NA	intron (NM_022652, intron 1 of 1)	intron (NM_022652, intron 1 of 1)	2351	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
116166	chr19	17401871	17402350	+	0	NA	TTS (NM_004335)	TTS (NM_004335)	3520	NM_004335	684		NM_004335	ENSG00000130303	BST2	CD317|HM1.24|TETHERIN	bone marrow stromal cell antigen 2	protein-coding
3584	chr1	16215021	16215380	+	0	NA	Intergenic	Intergenic	-2548	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
176427	chr4	89263321	89263600	+	0	NA	intron (NM_198281, intron 1 of 1)	MER61A|LTR|ERV1	44340	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
136331	chr2	175170621	175171030	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-2619	NM_001256091	1386		NM_001880	ENSG00000115966	ATF2	CRE-BP1|CREB-2|CREB2|HB16|TREB7	activating transcription factor 2	protein-coding
216660	chr8	22133051	22133900	+	0	NA	Intergenic	Intergenic	-2423	NM_018411	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
170258	chr3	184256671	184256830	+	0	NA	intron (NM_014693, intron 1 of 18)	AluSp|SINE|Alu	4803	NM_033259	94032		NM_033259	ENSG00000163888	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin dependent protein kinase II inhibitor 2	protein-coding
237093	chrX	104032471	104032630	+	0	NA	Intergenic	L1PA2|LINE|L1	-7399	NM_001164416	286436		NM_001164416	ENSG00000101812	H2BW2	H2B/s|H2BFM|H2BM	H2B.W histone 2	protein-coding
221241	chr8	122489521	122490180	+	0	NA	intron (NR_131202, intron 2 of 3)	intron (NR_131202, intron 2 of 3)	78794	NR_131202	105375734		NR_131202		SMILR	-	smooth muscle induced lncRNA, enhancer of proliferation	ncRNA
106209	chr18	11741621	11741880	+	0	NA	intron (NM_182978, intron 1 of 11)	intron (NM_182978, intron 1 of 11)	-9722	NM_001261443	2774		NM_002071	ENSG00000141404	GNAL	DYT25|HG1O	G protein subunit alpha L	protein-coding
127454	chr2	42196571	42197030	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-26569	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
236207	chrX	65684901	65685650	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	17621	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
117401	chr19	19616651	19616750	+	0	NA	intron (NM_025245, intron 1 of 7)	AluSg|SINE|Alu	1987	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
113220	chr19	8472171	8472730	+	0	NA	intron (NM_001297418, intron 9 of 13)	intron (NM_001297418, intron 9 of 13)	27475	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
208486	chr7	67276971	67277300	+	0	NA	intron (NR_046299, intron 5 of 5)	AluSq2|SINE|Alu	-1157	NM_001382715	442572		NM_001382715	ENSG00000230358	SPDYE21	SPDYE21P	speedy/RINGO cell cycle regulator family member E21	protein-coding
83806	chr16	28827671	28828030	+	0	NA	intron (NM_148416, intron 6 of 22)	FAM|SINE|Alu	4802	NM_007245	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
58550	chr12	132284301	132284500	+	0	NA	intron (NM_001122636, intron 2 of 10)	MER113|DNA|hAT-Charlie	9009	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
29249	chr10	69104671	69105480	+	0	NA	TTS (NM_001321054)	TTS (NM_001321054)	16972	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
55621	chr12	107014071	107014380	+	0	NA	intron (NM_004075, intron 2 of 12)	intron (NM_004075, intron 2 of 12)	-27059	NM_025198	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
51629	chr12	52980751	52981250	+	0	NA	Intergenic	Intergenic	-25456	NM_001300821	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
180380	chr5	7870801	7871080	+	0	NA	intron (NR_134482, intron 2 of 13)	intron (NR_134482, intron 2 of 13)	1792	NR_157174	4552		NM_002454	ENSG00000124275	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
14991	chr1	148076751	148077530	+	0	NA	intron (NR_146087, intron 1 of 7)	intron (NR_146087, intron 1 of 7)	27838	NR_146087	728920		NR_146087		PDE4DIPP1	PDE4DIP1	PDE4DIP pseudogene 1	pseudo
149818	chr21	35010551	35010650	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	28826	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
219564	chr8	78720301	78720500	+	0	NA	TTS (NR_156423)	TTS (NR_156423)	3974	NR_077236	101241902		NR_077236		C4orf46P3	-	C4orf46 pseudogene 3	pseudo
33213	chr10	114029771	114030330	+	0	NA	Intergenic	Intergenic	-13816	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
193945	chr6	31663521	31664170	+	0	NA	intron (NM_001199240, intron 3 of 3).7	intron (NM_001199240, intron 3 of 3).7	1152	NM_033177	7918		NM_033177	ENSG00000204438	GPANK1	ANKRD59|BAT4|D6S54E|G5|GPATCH10	G-patch domain and ankyrin repeats 1	protein-coding
201416	chr6	146700151	146700330	+	0	NA	intron (NM_024694, intron 12 of 35)	intron (NM_024694, intron 12 of 35)	101268	NM_024694	79747		NM_024694	ENSG00000118492	ADGB	C6orf103|CAPN16	androglobin	protein-coding
124146	chr19	55703621	55704430	+	0	NA	3' UTR (NM_001130072, exon 11 of 11)	3' UTR (NM_001130072, exon 11 of 11)	27400	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
73375	chr15	42546921	42547180	+	0	NA	intron (NM_153260, intron 4 of 5)	intron (NM_153260, intron 4 of 5)	1743	NM_153260	255252		NM_153260	ENSG00000180979	LRRC57	-	leucine rich repeat containing 57	protein-coding
189431	chr5	172881821	172882280	+	0	NA	intron (NM_001031711, intron 1 of 9)	Plat_L3|LINE|CR1	-33033	NR_162113	113218510		NR_162113		MIR10523	-	microRNA 10523	ncRNA
59502	chr13	26785021	26785500	+	0	NA	Intergenic	Intergenic	-24474	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
129202	chr2	68205201	68205530	+	0	NA	intron (NM_000945, intron 2 of 5)	AluSp|SINE|Alu	47167	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
224640	chr9	20616301	20616500	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	5538	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
102193	chr17	75166601	75167130	+	0	NA	3' UTR (NM_001005849, exon 3 of 3)	3' UTR (NM_001005849, exon 3 of 3)	-12353	NM_001002033	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
181098	chr5	36908721	36908980	+	0	NA	intron (NM_133433, intron 1 of 46)	intron (NM_133433, intron 1 of 46)	32081	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
96107	chr17	39631721	39632980	+	0	NA	intron (NM_032192, intron 4 of 6)	intron (NM_032192, intron 4 of 6)	3847	NM_001242464	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
73423	chr15	43104201	43104700	+	0	NA	intron (NM_174916, intron 1 of 46)	intron (NM_174916, intron 1 of 46)	1588	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
218742	chr8	58842151	58842550	+	0	NA	intron (NM_014729, intron 4 of 8)	MLT2B2|LTR|ERVL	-182497	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
225636	chr9	36333271	36333630	+	0	NA	Intergenic	AluSc|SINE|Alu	-56472	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
196781	chr6	45619951	45620380	+	0	NA	Intergenic	Intergenic	197890	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
229442	chr9	121400051	121400430	+	0	NA	Intergenic	Intergenic	-29936	NM_001270527	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
145968	chr20	46317501	46317700	+	0	NA	Intergenic	Intergenic	-9102	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
63364	chr13	114042221	114042500	+	0	NA	intron (NM_001320822, intron 3 of 23).2	intron (NM_001320822, intron 3 of 23).2	35595	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
125130	chr2	9840221	9840880	+	0	NA	Intergenic	AluJo|SINE|Alu	-2892	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
165314	chr3	87271551	87271650	+	0	NA	intron (NM_001122757, intron 2 of 5)	intron (NM_001122757, intron 2 of 5)	4984	NM_001122757	5449		NM_000306	ENSG00000064835	POU1F1	CPHD1|GHF-1|PIT1|POU1F1a|Pit-1	POU class 1 homeobox 1	protein-coding
14586	chr1	145194151	145194550	+	0	NA	intron (NR_156690, intron 1 of 3)	MLT1A|LTR|ERVL-MaLR	-20501	NR_148945	100996740		NR_148945		LOC100996740	-	uncharacterized LOC100996740	ncRNA
195237	chr6	36287621	36287880	+	0	NA	intron (NM_001374623, intron 1 of 8)	intron (NM_001374623, intron 1 of 8)	17290	NM_001145717	285848		NM_173676	ENSG00000180316	PNPLA1	ARCI10|dJ50J22.1	patatin like phospholipase domain containing 1	protein-coding
109935	chr19	1317821	1318250	+	0	NA	Intergenic	L1MB7|LINE|L1	32162	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
152750	chr22	21735121	21737400	+	0	NA	promoter-TSS (NR_130910)	promoter-TSS (NR_130910)	-466	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
108225	chr18	63192801	63193400	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	126669	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
166561	chr3	115672171	115672330	+	0	NA	intron (NM_001130064, intron 2 of 3)	MIRc|SINE|MIR	48740	NM_001130064	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
7703	chr1	36083371	36084830	+	0	NA	promoter-TSS (NM_014466)	promoter-TSS (NM_014466)	6	NM_014466	27285		NM_014466	ENSG00000092850	TEKT2	TEKTB1|TEKTIN-T|h-tektin-t	tektin 2	protein-coding
128868	chr2	64033851	64034550	+	0	NA	Intergenic	L2c|LINE|L2	-14772	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
12896	chr1	110350321	110350830	+	0	NA	Intergenic	Intergenic	11198	NM_022768	64783		NM_014092	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding
169493	chr3	169769021	169770000	+	0	NA	promoter-TSS (NM_032487)	promoter-TSS (NM_032487)	51	NM_032487	84517		NM_032487	ENSG00000184378	ACTRT3	ARP-T3|ARPM1	actin related protein T3	protein-coding
206449	chr7	32882901	32883480	+	0	NA	intron (NM_015483, intron 1 of 3)	AluSz6|SINE|Alu	8570	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
142751	chr20	10453121	10453580	+	0	NA	intron (NM_001009608, intron 1 of 7)	HAL1|LINE|L1	18045	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
107379	chr18	46057351	46057650	+	0	NA	intron (NM_024430, intron 1 of 14)	AluSq2|SINE|Alu	14760	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
217241	chr8	27113901	27114100	+	0	NA	Intergenic	L1HS|LINE|L1	-65037	NR_031680	100313884		NR_031680	ENSG00000221616	MIR548H4	MIR548H-4|MIRN548H4|hsa-mir-548h-4	microRNA 548h-4	ncRNA
237377	chrX	119300371	119300530	+	0	NA	intron (NR_110396, intron 1 of 3)	LTR12C|LTR|ERV1	8921	NR_110396	101928336		NR_110396	ENSG00000230392	LINC03098	-	long intergenic non-protein coding RNA 3098	ncRNA
136447	chr2	176843301	176843750	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	205771	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
175783	chr4	77796201	77796480	+	0	NA	intron (NM_001365006, intron 1 of 11)	MSTA|LTR|ERVL-MaLR	22724	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
98144	chr17	46023321	46023580	+	0	NA	intron (NR_165166, intron 9 of 9)	L1ME4b|LINE|L1	24200	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
187882	chr5	148803651	148803750	+	0	NA	Intergenic	Intergenic	-22911	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
178708	chr4	152678751	152679050	+	0	NA	intron (NM_152680, intron 1 of 6)	intron (NM_152680, intron 1 of 6)	1097	NM_152680	201799		NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding
113118	chr19	8302721	8303350	+	0	NA	intron (NM_016579, intron 3 of 4)	intron (NM_016579, intron 3 of 4)	5323	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
153198	chr22	23852301	23853150	+	0	NA	intron (NR_003082, intron 4 of 4)	L1ME3C|LINE|L1	-3978	NR_104248	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
89270	chr16	88668121	88668400	+	0	NA	intron (NR_024399, intron 1 of 3)	intron (NR_024399, intron 1 of 3)	4887	NR_024399	197187		NM_144986	ENSG00000260630	SNAI3-AS1	-	SNAI3 antisense RNA 1	ncRNA
84397	chr16	30329751	30330130	+	0	NA	intron (NR_002453, intron 1 of 12)	AluSx|SINE|Alu	5434	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
64481	chr14	24299151	24300430	+	0	NA	promoter-TSS (NM_001286367)	promoter-TSS (NM_001286367)	-10	NM_001136050	115817		NM_138452	ENSG00000157379	DHRS1	SDR19C1	dehydrogenase/reductase 1	protein-coding
23828	chr1	234579971	234580200	+	0	NA	Intergenic	Intergenic	29440	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
25384	chr10	6491621	6492590	+	0	NA	intron (NM_001282644, intron 7 of 17)	intron (NM_001282644, intron 7 of 17)	88171	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
38487	chr11	45866251	45866750	+	0	NA	intron (NM_021117, intron 5 of 11)	L2c|LINE|L2	19025	NM_021117	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
48419	chr12	9675131	9675780	+	0	NA	intron (NM_001197317, intron 1 of 3)	AluYk2|SINE|Alu	5742	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
181232	chr5	39190371	39190900	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	28928	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
222699	chr8	141298451	141298780	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	9673	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
11268	chr1	89066371	89066550	+	0	NA	Intergenic	AluSp|SINE|Alu	-1252	NM_002053	2633		NM_002053	ENSG00000117228	GBP1	hGBP1	guanylate binding protein 1	protein-coding
140935	chr2	237731121	237732300	+	0	NA	intron (NM_001137550, intron 8 of 23)	intron (NM_001137550, intron 8 of 23)	39505	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
111454	chr19	3848901	3849450	+	0	NA	intron (NM_015174, intron 1 of 18)	intron (NM_015174, intron 1 of 18)	19863	NM_001145640	23217		NM_015174	ENSG00000105278	ZFR2	KIAA1086	zinc finger RNA binding protein 2	protein-coding
121401	chr19	46954921	46956150	+	0	NA	intron (NM_004491, intron 3 of 6)	Tigger4b|DNA|TcMar-Tigger	-64302	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
90167	chr17	293001	293280	+	0	NA	intron (NM_006987, intron 5 of 9).2	intron (NM_006987, intron 5 of 9).2	-38379	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
177394	chr4	112233371	112233530	+	0	NA	intron (NM_018569, intron 1 of 9)	intron (NM_018569, intron 1 of 9)	1663	NM_001128426	55435		NM_018569	ENSG00000138660	AP1AR	2C18|C4orf16|GBAR|PRO0971|gamma-BAR	adaptor related protein complex 1 associated regulatory protein	protein-coding
151062	chr21	44723051	44723980	+	0	NA	Intergenic	Intergenic	-11943	NM_001272037	54084		NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|ECTD14|STHAG10|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding
4371	chr1	20722501	20722880	+	0	NA	intron (NM_001103160, intron 8 of 8)	intron (NM_001103160, intron 8 of 8)	-4683	NM_001122819	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
34734	chr10	133687401	133687980	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-60895	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
189223	chr5	171660501	171660700	+	0	NA	Intergenic	Intergenic	-125217	NM_001289970	644994		NM_001289970	ENSG00000185662	SMIM23	C5orf50	small integral membrane protein 23	protein-coding
62505	chr13	99438401	99438600	+	0	NA	Intergenic	L1M2|LINE|L1	60806	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
226035	chr9	42725151	42725900	+	0	NA	Intergenic	Intergenic	-62875	NR_131213	105500239		NR_131213		XLOC_007697	-	uncharacterized LOC105500239	ncRNA
23121	chr1	226691201	226692500	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-16782	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
175684	chr4	77031401	77032200	+	0	NA	intron (NM_018243, intron 9 of 9)	intron (NM_018243, intron 9 of 9)	43110	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
71447	chr14	105688071	105688230	+	0	NA	Intergenic	Intergenic	-15343	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
188933	chr5	160465351	160465650	+	0	NA	Intergenic	Intergenic	-2751	NR_132748	107075116		NR_132748	ENSG00000253522	MIR3142HG	-	MIR3142 host gene	ncRNA
59706	chr13	29595301	29596850	+	0	NA	promoter-TSS (NM_003045)	promoter-TSS (NM_003045)	-387	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
193671	chr6	30990321	30990850	+	0	NA	TTS (NM_001322371).5	TTS (NM_001322371).5	6867	NM_001010909	394263		NM_001010909	ENSG00000204544	MUC21	C6orf205|KMQK697|MUC-21	mucin 21, cell surface associated	protein-coding
216355	chr8	17333971	17334130	+	0	NA	TTS (NM_001363172)	TTS (NM_001363172)	79301	NM_004686	9108		NM_004686	ENSG00000003987	MTMR7	-	myotubularin related protein 7	protein-coding
49977	chr12	42118501	42118700	+	0	NA	intron (NM_173601, intron 3 of 7)	THE1D|LTR|ERVL-MaLR	26274	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
171890	chr4	788671	789350	+	0	NA	intron (NM_006651, intron 3 of 3)	intron (NM_006651, intron 3 of 3)	-7162	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
61533	chr13	60162771	60163020	+	0	NA	intron (NM_001042517, intron 1 of 27)	intron (NM_001042517, intron 1 of 27)	1033	NM_001258367	81624		NM_030932	ENSG00000139734	DIAPH3	AN|AUNA1|DIA2|DRF3|NSDAN|diap3|mDia2	diaphanous related formin 3	protein-coding
218546	chr8	54019901	54020430	+	0	NA	intron (NM_006756, intron 1 of 9)	intron (NM_006756, intron 1 of 9)	2283	NM_006756	6917		NM_006756	ENSG00000187735	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A1	protein-coding
189347	chr5	172186451	172186570	+	0	NA	intron (NM_005990, intron 1 of 18)	AluJb|SINE|Alu	1714	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
155641	chr22	38959401	38960000	+	0	NA	intron (NM_145699, intron 2 of 4)	intron (NM_145699, intron 2 of 4)	2091	NM_145699	200315		NM_145699	ENSG00000128383	APOBEC3A	A3A|ARP3|PHRBN|bK150C2.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3A	protein-coding
78565	chr15	93019051	93019350	+	0	NA	intron (NM_001271, intron 37 of 38)	intron (NM_001271, intron 37 of 38)	53956	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
106424	chr18	13548121	13548380	+	0	NA	intron (NM_001378099, intron 4 of 6)	MER52A|LTR|ERV1	-62864	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
43543	chr11	82901201	82902480	+	0	NA	promoter-TSS (NM_001319214)	promoter-TSS (NM_001319214)	-100	NM_001319214	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
156220	chr22	40339771	40339930	+	0	NA	Intergenic	L2|LINE|L2	-6650	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
51321	chr12	51325971	51326280	+	0	NA	Intergenic	AluJb|SINE|Alu	-1457	NM_001290007	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
142939	chr20	18679101	18679300	+	0	NA	intron (NR_109955, intron 2 of 3)	intron (NR_109955, intron 2 of 3)	19508	NR_109955	101929526		NR_109955	ENSG00000233993	DTD1-AS1	-	DTD1 antisense RNA 1	ncRNA
55329	chr12	103940071	103940430	+	0	NA	intron (NM_003299, intron 8 of 17)	Kanga2_a|DNA|TcMar-Tc2	9825	NR_037425	100500842		NR_037425	ENSG00000284503	MIR3652	-	microRNA 3652	ncRNA
173521	chr4	9703421	9703850	+	0	NA	Intergenic	Intergenic	-77999	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
30825	chr10	86366401	86367150	+	0	NA	promoter-TSS (NM_017551)	promoter-TSS (NM_017551)	20	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
220695	chr8	101515821	101516280	+	0	NA	intron (NM_001330593, intron 1 of 15)	MIR|SINE|MIR	23611	NM_001330593	79977		NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|PPCD4|TFCP2L3	grainyhead like transcription factor 2	protein-coding
128437	chr2	55518251	55518350	+	0	NA	Intergenic	AluSx|SINE|Alu	-1295	NM_001282761	112942		NM_080667	ENSG00000163001	CFAP36	BARTL1|CCDC104	cilia and flagella associated protein 36	protein-coding
193358	chr6	30319071	30319230	+	0	NA	intron (NR_024052, intron 1 of 4)	MSTC|LTR|ERVL-MaLR	6984	NR_052012	414778		NR_052012	ENSG00000270604	HCG17	HCG18|LINC00046|NCRNA00046	HLA complex group 17	ncRNA
37188	chr11	14249171	14249700	+	0	NA	intron (NM_006108, intron 7 of 15)	intron (NM_006108, intron 7 of 15)	109050	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
212121	chr7	116226401	116226830	+	0	NA	intron (NM_152829, intron 1 of 6)	intron (NM_152829, intron 1 of 6)	3662	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
63928	chr14	21999401	21999850	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-328608	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
78590	chr15	93044501	93045000	+	0	NA	3' UTR (NM_001166289, exon 4 of 4)	3' UTR (NM_001166289, exon 4 of 4)	28406	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
87449	chr16	71157451	71157550	+	0	NA	intron (NM_017558, intron 6 of 19)	intron (NM_017558, intron 6 of 19)	73222	NM_017558	54768		NM_017558	ENSG00000157423	HYDIN	CILD5|HYDIN1|HYDIN2|PPP1R31	HYDIN axonemal central pair apparatus protein	protein-coding
201325	chr6	144411101	144412230	+	0	NA	intron (NM_007124, intron 2 of 73)	intron (NM_007124, intron 2 of 73)	6010	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
49624	chr12	27975501	27975900	+	0	NA	Intergenic	Intergenic	-2967	NM_198965	5744		NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
195010	chr6	35418671	35419030	+	0	NA	intron (NM_001171820, intron 3 of 5)	intron (NM_001171820, intron 3 of 5)	-33488	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
146221	chr20	48797151	48797250	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	30799	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
37881	chr11	33984871	33985030	+	0	NA	Intergenic	Intergenic	-66781	NM_005898	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
104726	chr17	81638251	81638600	+	0	NA	intron (NM_001290212, intron 1 of 3)	AluSx|SINE|Alu	1229	NM_001290212	83882		NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
232173	chr9	134173151	134173650	+	0	NA	Intergenic	Intergenic	-8836	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
29587	chr10	71730321	71731000	+	0	NA	intron (NM_001171930, intron 30 of 30)	intron (NM_001171930, intron 30 of 30)	7190	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
145640	chr20	44887051	44887750	+	0	NA	intron (NM_139323, intron 1 of 5)	intron (NM_139323, intron 1 of 5)	1695	NM_003404	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
60606	chr13	42055001	42055830	+	0	NA	intron (NM_001204504, intron 2 of 29)	intron (NM_001204504, intron 2 of 29)	6767	NM_178009	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
145996	chr20	46403421	46403700	+	0	NA	intron (NM_001318253, intron 1 of 21)	intron (NM_001318253, intron 1 of 21)	3055	NM_001318253	63916		NM_022086	ENSG00000062598	ELMO2	CED-12|CED12|Ced-12A|ELMO-2|VMPI	engulfment and cell motility 2	protein-coding
74254	chr15	56961901	56962330	+	0	NA	intron (NM_207038, intron 3 of 19)	AluYc3|SINE|Alu	42670	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
176902	chr4	102796021	102796400	+	0	NA	3' UTR (NM_181893, exon 7 of 7)	3' UTR (NM_181893, exon 7 of 7)	19173	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
110627	chr19	2217301	2218100	+	0	NA	intron (NM_032482, intron 21 of 27)	intron (NM_032482, intron 21 of 27)	16449	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
225114	chr9	33458171	33459680	+	0	NA	Intergenic	Intergenic	9010	NR_106910	102465512		NR_106910	ENSG00000275651	MIR6851	hsa-mir-6851	microRNA 6851	ncRNA
39646	chr11	61577151	61578130	+	0	NA	intron (NM_001370211, intron 1 of 7)	intron (NM_001370211, intron 1 of 7)	3232	NM_001252065	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
12351	chr1	101223651	101223750	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	12828	NR_104626	101928370		NR_104626		S1PR1-DT	LISPR1	S1PR1 divergent transcript	ncRNA
13831	chr1	117630371	117631000	+	0	NA	Intergenic	Intergenic	24637	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
238045	chrX	135403351	135403800	+	0	NA	Intergenic	Intergenic	7146	NR_104652	100506790		NR_104652	ENSG00000290806	LOC100506790	-	uncharacterized LOC100506790	ncRNA
76716	chr15	75929051	75929350	+	0	NA	intron (NM_147188, intron 5 of 6)	MLT1C|LTR|ERVL-MaLR	25322	NR_037623	26263		NM_012170	ENSG00000167196	FBXO22	FBX22|FISTC1	F-box protein 22	protein-coding
200058	chr6	130017971	130020000	+	0	NA	promoter-TSS (NM_001346551)	promoter-TSS (NM_001346551)	-75	NM_001346551	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
56186	chr12	111436771	111437250	+	0	NA	intron (NM_001291424, intron 1 of 6)	intron (NM_001291424, intron 1 of 6)	2148	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
85202	chr16	47016651	47017150	+	0	NA	Intergenic	Intergenic	-43226	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
237520	chrX	120213651	120213980	+	0	NA	Intergenic	L1MA4|LINE|L1	31452	NR_027131	158801		NM_173522	ENSG00000293328	NKAPP1	CXorf42	NFKB activating protein pseudogene 1	pseudo
128896	chr2	64139601	64140000	+	0	NA	intron (NM_020651, intron 1 of 6)	MER117|DNA|hAT-Charlie	4620	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
176652	chr4	99944921	99945230	+	0	NA	intron (NM_001031723, intron 1 of 7)	L1MB2|LINE|L1	1543	NM_001278311	79982		NM_024920	ENSG00000164031	DNAJB14	EGNR9427|PRO34683	DnaJ heat shock protein family (Hsp40) member B14	protein-coding
107073	chr18	34788001	34788300	+	0	NA	intron (NM_001198939, intron 4 of 21)	intron (NM_001198939, intron 4 of 21)	-29812	NM_001198943	1837		NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding
74432	chr15	59298271	59298430	+	0	NA	intron (NM_004998, intron 1 of 27)	intron (NM_004998, intron 1 of 27)	74521	NM_004998	4643		NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
165087	chr3	71486751	71487950	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluJr|SINE|Alu	54739	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
37723	chr11	31361501	31361980	+	0	NA	intron (NM_181807, intron 1 of 8)	AluSz|SINE|Alu	7999	NM_001367979	341019		NM_020869	ENSG00000170959	DCDC1	DCDC5	doublecortin domain containing 1	protein-coding
153166	chr22	23797001	23797200	+	0	NA	intron (NM_003073, intron 3 of 8).2	AluYe5|SINE|Alu	10134	NM_001007468	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
13138	chr1	111664771	111665630	+	0	NA	intron (NM_001370217, intron 1 of 7)	intron (NM_001370217, intron 1 of 7)	406	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
182550	chr5	65774471	65774630	+	0	NA	intron (NM_020726, intron 3 of 12)	intron (NM_020726, intron 3 of 12)	52345	NM_020726	57486		NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
5905	chr1	26828451	26829580	+	0	NA	intron (NM_032283, intron 1 of 7)	intron (NM_032283, intron 1 of 7)	2327	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
129185	chr2	68180871	68181230	+	0	NA	intron (NM_000945, intron 5 of 5)	intron (NM_000945, intron 5 of 5)	23162	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
40220	chr11	63539201	63540280	+	0	NA	intron (NM_004585, intron 2 of 3)	AluSp|SINE|Alu	2932	NM_004585	5920		NM_004585	ENSG00000133321	PLAAT4	HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3	phospholipase A and acyltransferase 4	protein-coding
48843	chr12	12369301	12370150	+	0	NA	intron (NM_058169, intron 2 of 3)	AluSx|SINE|Alu	12647	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
144755	chr20	36604371	36607450	+	0	NA	non-coding (NR_026562, exon 1 of 5)	non-coding (NR_026562, exon 1 of 5)	131	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
218579	chr8	55805671	55805830	+	0	NA	intron (NM_001317902, intron 9 of 10)	AluSx|SINE|Alu	32304	NM_024831	96764		NM_024831	ENSG00000137574	TGS1	NCOA6IP|PIMT|PIPMT	trimethylguanosine synthase 1	protein-coding
54467	chr12	92000371	92001130	+	0	NA	intron (NR_132341, intron 1 of 4)	L1MA5A|LINE|L1	140963	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
152882	chr22	22635901	22636630	+	0	NA	intron (NR_024591, intron 5 of 9)	intron (NR_024591, intron 5 of 9)	8276	NR_024591	25812		NM_014348		POM121L1P	POM121L1	POM121 transmembrane nucleoporin like 1, pseudogene	pseudo
73865	chr15	50315921	50316280	+	0	NA	intron (NM_016654, intron 1 of 8)	intron (NM_016654, intron 1 of 8)	-38074	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
74615	chr15	60595251	60595550	+	0	NA	intron (NM_134260, intron 1 of 11)	AluSz|SINE|Alu	-2874	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
84027	chr16	29498601	29499230	+	0	NA	intron (NM_001355401, intron 2 of 7)	AluSx|SINE|Alu	6959	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
213642	chr7	139696621	139697080	+	0	NA	intron (NM_022740, intron 2 of 14)	MIRb|SINE|MIR	81148	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
143235	chr20	24991071	24991430	+	0	NA	intron (NM_020531, intron 1 of 8)	intron (NM_020531, intron 1 of 8)	1501	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
105980	chr18	5629801	5630100	+	0	NA	promoter-TSS (NM_001281535)	promoter-TSS (NM_001281535)	713	NM_001384700	23136		NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1 like 3	protein-coding
74774	chr15	63247951	63248050	+	0	NA	intron (NM_016530, intron 2 of 7)	intron (NM_016530, intron 2 of 7)	-29550	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
68436	chr14	81463701	81463900	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-13643	NR_109999	100506700		NR_109999		LINC02308	-	long intergenic non-protein coding RNA 2308	ncRNA
79218	chr16	363271	363580	+	0	NA	Intergenic	Intergenic	7113	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
187750	chr5	143898501	143899250	+	0	NA	Intergenic	Intergenic	86714	NM_021182	57824		NM_021182	ENSG00000158497	HMHB1	HB-1|HB-1Y|HLA-HB1	histocompatibility minor HB-1	protein-coding
119312	chr19	39877551	39878630	+	0	NA	exon (NM_003890, exon 21 of 29)	exon (NM_003890, exon 21 of 29)	-31711	NM_001436	2091		NM_001436	ENSG00000105202	FBL	FIB|FLRN|Nop1|RNU3IP1	fibrillarin	protein-coding
159392	chr3	13424101	13424500	+	0	NA	Intergenic	L1MC5|LINE|L1	-3978	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
73890	chr15	50557971	50558730	+	0	NA	non-coding (NR_149154, exon 38 of 38)	non-coding (NR_149154, exon 38 of 38)	-11684	NM_203494	373509		NM_203494	ENSG00000170236	USP50	-	ubiquitin specific peptidase 50	protein-coding
232720	chr9	136599951	136600450	+	0	NA	Intergenic	Intergenic	16981	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
124222	chr19	57279551	57281580	+	0	NA	promoter-TSS (NM_006635)	promoter-TSS (NM_006635)	80	NM_006635	10794		NM_006635	ENSG00000197714	ZNF460	HZF8|ZNF272	zinc finger protein 460	protein-coding
23730	chr1	232452251	232452350	+	0	NA	intron (NM_001377488, intron 10 of 21)	intron (NM_001377488, intron 10 of 21)	177833	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
2047	chr1	7785921	7786430	+	0	NA	intron (NM_001289863, intron 3 of 22)	AluY|SINE|Alu	1746	NM_001289862	8863		NM_016831	ENSG00000049246	PER3	FASPS3|GIG13	period circadian regulator 3	protein-coding
9531	chr1	51488221	51489280	+	0	NA	intron (NM_001981, intron 1 of 24)	MLT1J|LTR|ERVL-MaLR	30516	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
186140	chr5	134161271	134161430	+	0	NA	intron (NM_170679, intron 3 of 5)	intron (NM_170679, intron 3 of 5)	15600	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
204673	chr7	5491221	5491680	+	0	NA	intron (NM_024963, intron 3 of 4)	intron (NM_024963, intron 3 of 4)	4467	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
39428	chr11	60890771	60891130	+	0	NA	3' UTR (NM_014502, exon 16 of 16)	3' UTR (NM_014502, exon 16 of 16)	15635	NM_014502	27339		NM_014502	ENSG00000110107	PRPF19	NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4	pre-mRNA processing factor 19	protein-coding
176535	chr4	98151321	98151580	+	0	NA	Intergenic	7SK|RNA|RNA	-7974	NM_174952	285555		NM_174952	ENSG00000163116	STPG2	C4orf37	sperm tail PG-rich repeat containing 2	protein-coding
41170	chr11	65618451	65618550	+	0	NA	exon (NM_032223, exon 6 of 35)	exon (NM_032223, exon 6 of 35)	2188	NM_032223	399909		NM_032223	ENSG00000197136	PCNX3	PCNXL3	pecanex 3	protein-coding
169215	chr3	157086671	157087300	+	0	NA	intron (NR_034007, intron 3 of 3)	intron (NR_034007, intron 3 of 3)	-2896	NR_034008	100498859		NR_034008		LINC00881	LIPTER	long intergenic non-protein coding RNA 881	ncRNA
3648	chr1	16398421	16399030	+	0	NA	TTS (NR_073501)	TTS (NR_073501)	31483	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
197272	chr6	70673601	70674050	+	0	NA	intron (NM_001281440, intron 1 of 10)	intron (NM_001281440, intron 1 of 10)	5295	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
59223	chr13	23488301	23488880	+	0	NA	Intergenic	Intergenic	19078	NR_038995	100506697		NR_038995	ENSG00000232977	LINC00327	NCRNA00327	long intergenic non-protein coding RNA 327	ncRNA
96601	chr17	40538151	40538750	+	0	NA	Intergenic	Intergenic	21944	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
80927	chr16	3806721	3806980	+	0	NA	intron (NM_004380, intron 3 of 30)	intron (NM_004380, intron 3 of 30)	73270	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
46999	chr12	140751	141050	+	0	NA	intron (NR_033859, intron 5 of 9)	intron (NR_033859, intron 5 of 9)	8269	NR_033859	574538		NR_033859	ENSG00000249695	LOC574538	-	uncharacterized LOC574538	ncRNA
21643	chr1	206636921	206637850	+	0	NA	intron (NM_001004023, intron 2 of 3)	intron (NM_001004023, intron 2 of 3)	1849	NM_001004023	8444		NM_003582	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual specificity tyrosine phosphorylation regulated kinase 3	protein-coding
47582	chr12	4604621	4605170	+	0	NA	promoter-TSS (NM_001282286)	promoter-TSS (NM_001282286)	32	NM_001282285	8798		NM_003845	ENSG00000010219	DYRK4	-	dual specificity tyrosine phosphorylation regulated kinase 4	protein-coding
18531	chr1	162023601	162024230	+	0	NA	5' UTR (NM_001297713, exon 1 of 8)	5' UTR (NM_001297713, exon 1 of 8)	550	NM_001347700	25903		NM_015441	ENSG00000162745	OLFML2B	-	olfactomedin like 2B	protein-coding
206476	chr7	33041871	33042400	+	0	NA	intron (NM_001374336, intron 1 of 10)	AluSq|SINE|Alu	-1229	NM_001166118	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
107346	chr18	45840351	45840450	+	0	NA	intron (NM_213602, intron 5 of 5)	intron (NM_213602, intron 5 of 5)	14725	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
222970	chr8	143203551	143204230	+	0	NA	Intergenic	Intergenic	-9328	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
122018	chr19	48609921	48611000	+	0	NA	intron (NM_017708, intron 4 of 6)	intron (NM_017708, intron 4 of 6)	3718	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
133416	chr2	118857551	118858350	+	0	NA	Intergenic	CpG	-10302	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
3707	chr1	16584951	16585050	+	0	NA	intron (NM_017940, intron 12 of 28)	intron (NM_017940, intron 12 of 28)	28564	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
204774	chr7	5608871	5609050	+	0	NA	Intergenic	Intergenic	16144	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
55127	chr12	98599871	98600030	+	0	NA	TTS (NR_003015)	TTS (NR_003015)	315	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
235332	chrX	43813951	43814130	+	0	NA	intron (NM_000898, intron 3 of 14)	L2a|LINE|L2	68410	NM_000898	4129		NM_000898	ENSG00000069535	MAOB	-	monoamine oxidase B	protein-coding
47318	chr12	1733151	1733250	+	0	NA	intron (NM_001375365, intron 1 of 7).2	intron (NM_001375365, intron 1 of 7).2	42130	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
35804	chr11	2203971	2204130	+	0	NA	Intergenic	Intergenic	30987	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
67872	chr14	74257221	74258780	+	0	NA	intron (NM_182894, intron 3 of 4)	CpG	18551	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
146843	chr20	51422951	51423530	+	0	NA	intron (NM_012340, intron 9 of 10)	AluJo|SINE|Alu	29737	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
195169	chr6	35883801	35884000	+	0	NA	intron (NR_034069, intron 6 of 15)	AluY|SINE|Alu	37198	NM_003137	6732		NM_003137	ENSG00000096063	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
199152	chr6	111730171	111730830	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	28631	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
161469	chr3	42263401	42263800	+	0	NA	exon (NM_000729, exon 4 of 5)	exon (NM_000729, exon 4 of 5)	347	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
173870	chr4	24472351	24473450	+	0	NA	promoter-TSS (NM_001330752)	promoter-TSS (NM_001330752)	5	NM_001330751	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
80715	chr16	3087851	3087950	+	0	NA	TTS (NM_001282415)	TTS (NM_001282415)	11394	NM_001282415	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
191691	chr6	13612351	13612650	+	0	NA	non-coding (NR_164853, exon 7 of 7)	non-coding (NR_164853, exon 7 of 7)	-2827	NM_001317724	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
214125	chr7	144204001	144204400	+	0	NA	intron (NR_126022, intron 1 of 4).3	intron (NR_126022, intron 1 of 4).3	-8321	NM_001368318	445328		NM_001003702	ENSG00000213214	ARHGEF35	ARHGEF5L	Rho guanine nucleotide exchange factor 35	protein-coding
34472	chr10	132457401	132457880	+	0	NA	Intergenic	Intergenic	12451	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
173345	chr4	7771001	7771800	+	0	NA	intron (NM_001371091, intron 16 of 17)	(TTATATA)n|Simple_repeat|Simple_repeat	17310	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
88348	chr16	84551751	84553000	+	0	NA	Intergenic	Intergenic	-47716	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
27301	chr10	30438601	30439030	+	0	NA	intron (NM_005204, intron 2 of 8)	intron (NM_005204, intron 2 of 8)	4169	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
80674	chr16	3026071	3027430	+	0	NA	TTS (NM_001103175)	TTS (NM_001103175)	-2464	NM_001002018	54985		NM_017885	ENSG00000103145	HCFC1R1	HPIP	host cell factor C1 regulator 1	protein-coding
227481	chr9	91160421	91161250	+	0	NA	intron (NR_135306, intron 2 of 2)	intron (NR_135306, intron 2 of 2)	41773	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
10629	chr1	69675851	69675950	+	0	NA	intron (NM_001366842, intron 1 of 7)	intron (NM_001366842, intron 1 of 7)	106559	NM_001366842	57554		NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
27972	chr10	42637451	42639350	+	0	NA	intron (NM_001305039, intron 1 of 5)	CpG	170	NM_001305037	7582		NM_006955	ENSG00000196693	ZNF33B	KOX2|KOX31|ZNF11B	zinc finger protein 33B	protein-coding
140502	chr2	233202251	233202900	+	0	NA	intron (NM_001017915, intron 25 of 26).2	intron (NM_001017915, intron 25 of 26).2	-48996	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
224947	chr9	33038701	33039530	+	0	NA	3' UTR (NM_001539, exon 9 of 9)	3' UTR (NM_001539, exon 9 of 9)	13842	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
148256	chr20	63656401	63656950	+	0	NA	Intergenic	Intergenic	-1135	NM_001283010	51750		NM_015647	ENSG00000258366	RTEL1	C20orf41|DKCA4|DKCB5|NHL|PFBMFT3|RTEL	regulator of telomere elongation helicase 1	protein-coding
219913	chr8	86160751	86161300	+	0	NA	Intergenic	Intergenic	62115	NM_152565	245972		NM_152565	ENSG00000147614	ATP6V0D2	ATP6D2|VMA6	ATPase H+ transporting V0 subunit d2	protein-coding
75985	chr15	70533771	70534130	+	0	NA	Intergenic	Intergenic	-28022	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
90369	chr17	1249971	1250130	+	0	NA	Intergenic	Intergenic	-20328	NM_001322841	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
189841	chr5	177098601	177099050	+	0	NA	TTS (NM_002011)	TTS (NM_002011)	9275	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
236250	chrX	65747101	65747700	+	0	NA	Intergenic	L2a|LINE|L2	79746	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
201541	chr6	149175071	149175230	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-42774	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
84199	chr16	29862571	29864180	+	0	NA	promoter-TSS (NR_024370)	promoter-TSS (NR_024370)	-149	NM_001286586	10423		NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
56208	chr12	111529421	111530280	+	0	NA	intron (NM_002973, intron 5 of 24)	intron (NM_002973, intron 5 of 24)	69465	NM_001372574	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
111040	chr19	3094801	3095330	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	703	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
219282	chr8	67602451	67602950	+	0	NA	intron (NM_020361, intron 2 of 10)	intron (NM_020361, intron 2 of 10)	143660	NM_020361	57094		NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
223021	chr8	143306521	143306980	+	0	NA	Intergenic	Intergenic	15333	NM_030895	79943		NM_030895	ENSG00000185730	ZNF696	-	zinc finger protein 696	protein-coding
36403	chr11	4072371	4073100	+	0	NA	intron (NR_168436, intron 6 of 7)	intron (NR_168436, intron 6 of 7)	-21950	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
163448	chr3	50600571	50601700	+	0	NA	Intergenic	Intergenic	10639	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
151178	chr21	45017821	45018080	+	0	NA	Intergenic	L1MB3|LINE|L1	-13223	NR_024089	378825		NR_024089	ENSG00000275874	PICSAR	C21orf113|LINC00162|NCRNA00162|NLC1-C|NLC1C|PRED74	P38 inhibited cutaneous squamous cell carcinoma associated lincRNA	ncRNA
157550	chr22	45639801	45640380	+	0	NA	Intergenic	L2c|LINE|L2	-31708	NM_001167621	25814		NM_013236	ENSG00000130638	ATXN10	ATX10|E46L|HUMEEP|SCA10	ataxin 10	protein-coding
92980	chr17	17127171	17127780	+	0	NA	intron (NM_015134, intron 4 of 22)	intron (NM_015134, intron 4 of 22)	78858	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
37206	chr11	14328851	14329150	+	0	NA	intron (NM_001177314, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	29485	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
126509	chr2	28417321	28417580	+	0	NA	TTS (NM_005253)	TTS (NM_005253)	-22778	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
28528	chr10	50421321	50421730	+	0	NA	intron (NM_147156, intron 6 of 10)	MER54B|LTR|ERVL	-170009	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
97976	chr17	45257501	45257700	+	0	NA	intron (NM_152343, intron 1 of 4)	MIRc|SINE|MIR	-4480	NR_024435	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
124197	chr19	56333601	56333830	+	0	NA	intron (NM_001322072, intron 2 of 6)	L1PA16|LINE|L1	-18876	NM_001322078	79149		NM_024303	ENSG00000131848	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
229711	chr9	124838451	124839050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14667	NM_001276374	401551		NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
194290	chr6	32667921	32668650	+	0	NA	Intergenic	Intergenic	-1628	NM_002123	3119		NM_002123	ENSG00000179344	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
51091	chr12	49969171	49969330	+	0	NA	Intergenic	Intergenic	-3697	NM_001652	363		NM_001652	ENSG00000086159	AQP6	AQP2L|KID	aquaporin 6	protein-coding
55099	chr12	98456771	98457230	+	0	NA	non-coding (NR_033801, exon 1 of 1)	non-coding (NR_033801, exon 1 of 1)	145	NR_033801	121456		NR_033801	ENSG00000293147	SLC9A7P1	-	solute carrier family 9 member 7 pseudogene 1	pseudo
159143	chr3	12660051	12660350	+	0	NA	intron (NM_001354691, intron 1 of 16)	intron (NM_001354691, intron 1 of 16)	3308	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
88702	chr16	85829971	85830130	+	0	NA	Intergenic	Intergenic	30355	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
42934	chr11	73405951	73406250	+	0	NA	3' UTR (NM_001286051, exon 6 of 6)	3' UTR (NM_001286051, exon 6 of 6)	29432	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
87813	chr16	75568521	75568780	+	0	NA	intron (NM_007285, intron 3 of 3)	intron (NM_007285, intron 3 of 3)	2271	NM_007285	11345		NM_007285	ENSG00000034713	GABARAPL2	ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2	GABA type A receptor associated protein like 2	protein-coding
109502	chr19	828871	829630	+	0	NA	intron (NM_001700, intron 2 of 4)	intron (NM_001700, intron 2 of 4)	1413	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
217823	chr8	37275271	37275900	+	0	NA	Intergenic	Intergenic	218328	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
89750	chr16	89444901	89445450	+	0	NA	intron (NR_110931, intron 2 of 2)	intron (NR_110931, intron 2 of 2)	14257	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
192138	chr6	16767151	16767800	+	0	NA	TTS (NR_136240)	TTS (NR_136240)	-5985	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
135933	chr2	171920251	171920550	+	0	NA	Intergenic	Intergenic	-2025	NR_027862	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
216967	chr8	23020451	23020750	+	0	NA	TTS (NM_001374791)	TTS (NM_001374791)	21052	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
30599	chr10	80160921	80161180	+	0	NA	intron (NM_145868, intron 12 of 15)	L2a|LINE|L2	28320	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
147551	chr20	59955351	59955450	+	0	NA	Intergenic	Intergenic	-3023	NM_177980	60437		NM_021810	ENSG00000124215	CDH26	VR20	cadherin 26	protein-coding
237871	chrX	130401421	130402380	+	0	NA	promoter-TSS (NM_016024)	promoter-TSS (NM_016024)	-87	NM_016024	51634		NM_016024	ENSG00000134597	RBMX2	CGI-79|Snu17	RNA binding motif protein X-linked 2	protein-coding
37866	chr11	33801401	33801600	+	0	NA	Intergenic	LTR65|LTR|ERV1	26801	NR_120550	101928440		NR_120550	ENSG00000254508	FBXO3-DT	FBXO3-AS1	FBXO3 divergent transcript	ncRNA
123273	chr19	53511901	53512330	+	0	NA	Intergenic	Intergenic	-8899	NM_018555	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
203622	chr7	955971	956580	+	0	NA	promoter-TSS (NM_001284308)	promoter-TSS (NM_001284308)	-868	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
99297	chr17	49793421	49793930	+	0	NA	intron (NM_001199156, intron 2 of 12)	AluSc|SINE|Alu	4994	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
24729	chr1	247893801	247893950	+	0	NA	Intergenic	L1PA2|LINE|L1	-1712	NM_001001957	343171		NM_001001957	ENSG00000238243	OR2W3	OR2W3P|OR2W8P|OST718	olfactory receptor family 2 subfamily W member 3	protein-coding
215155	chr7	155490451	155491400	+	0	NA	Intergenic	Intergenic	18949	NM_001369821	285888		NM_001103176	ENSG00000146910	CNPY1	-	canopy FGF signaling regulator 1	protein-coding
34575	chr10	133235121	133235850	+	0	NA	Intergenic	CpG	-2370	NM_014468	27287		NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
61613	chr13	73632671	73632830	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	68506	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
6818	chr1	30949121	30949450	+	0	NA	promoter-TSS (NR_004054).2	promoter-TSS (NR_004054).2	-80	NR_033295	692235		NR_033295		SNORD103B	U103B	small nucleolar RNA, C/D box 103B	snoRNA
81225	chr16	4530971	4531330	+	0	NA	intron (NM_001199055, intron 1 of 5)	AluY|SINE|Alu	7279	NM_001199054	29965		NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
57831	chr12	123239771	123239930	+	0	NA	intron (NM_001194995, intron 1 of 2)	intron (NM_001194995, intron 1 of 2)	6106	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
157778	chr22	46750901	46751200	+	0	NA	Intergenic	Intergenic	-11567	NM_001284303	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
42047	chr11	67454771	67454930	+	0	NA	promoter-TSS (NM_001300895)	promoter-TSS (NM_001300895)	-504	NM_145200	57010		NM_145200	ENSG00000175544	CABP4	CRSD|CSNB2B	calcium binding protein 4	protein-coding
183109	chr5	74639071	74639450	+	0	NA	promoter-TSS (NM_001292004)	promoter-TSS (NM_001292004)	-763	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
195285	chr6	36513471	36513630	+	0	NA	intron (NM_007271, intron 7 of 13)	AluSc|SINE|Alu	33929	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
152986	chr22	23144801	23146600	+	0	NA	intron (NR_146295, intron 1 of 9)	CpG	223	NR_146295	9609		NM_004914	ENSG00000100228	RAB36	-	RAB36, member RAS oncogene family	protein-coding
126284	chr2	27201771	27202450	+	0	NA	intron (NR_028323, intron 11 of 16)	intron (NR_028323, intron 11 of 16)	10158	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
9267	chr1	46300601	46300980	+	0	NA	intron (NM_006369, intron 1 of 9)	intron (NM_006369, intron 1 of 9)	2826	NM_006369	10489		NM_006369	ENSG00000132128	LRRC41	MUF1|PP7759	leucine rich repeat containing 41	protein-coding
57138	chr12	121228851	121229150	+	0	NA	exon (NM_001261397, exon 8 of 12)	exon (NM_001261397, exon 8 of 12)	18871	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
109987	chr19	1413021	1413580	+	0	NA	intron (NM_170711, intron 1 of 12)	intron (NM_170711, intron 1 of 12)	5714	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
234641	chrX	20061371	20061600	+	0	NA	intron (NM_152780, intron 3 of 15)	(GCCCT)n|Simple_repeat|Simple_repeat	-44298	NR_037414	100500809		NR_037414	ENSG00000264566	MIR23C	hsa-mir-23c|mir-23c	microRNA 23c	ncRNA
198452	chr6	106118901	106119100	+	0	NA	Intergenic	L1MB2|LINE|L1	20059	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
95193	chr17	35217071	35217430	+	0	NA	Intergenic	MER65C|LTR|ERV1	-22857	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
160096	chr3	18936101	18936300	+	0	NA	Intergenic	L1PA2|LINE|L1	-212310	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
15307	chr1	149856071	149856700	+	0	NA	intron (NR_168447, intron 1 of 1).2	L2c|LINE|L2	3777	NM_001005464	333932		NM_001005464	ENSG00000203852	H3C15	H3/n|H3/o|H3C13|H3C14|HIST2H3A	H3 clustered histone 15	protein-coding
117326	chr19	19517271	19517530	+	0	NA	intron (NM_015965, intron 1 of 4)	AluJb|SINE|Alu	1175	NM_015965	51079		NM_015965	ENSG00000186010	NDUFA13	B16.6|CDA016|CGI-39|GRIM-19|GRIM19|MC1DN28	NADH:ubiquinone oxidoreductase subunit A13	protein-coding
236964	chrX	101357301	101357500	+	0	NA	intron (NM_001287344, intron 13 of 18)	intron (NM_001287344, intron 13 of 18)	-8658	NM_004085	1678		NM_004085	ENSG00000126953	TIMM8A	DDP|DDP1|DFN1|MTS|TIM8	translocase of inner mitochondrial membrane 8A	protein-coding
36136	chr11	3124851	3125150	+	0	NA	intron (NM_145638, intron 3 of 20)	intron (NM_145638, intron 3 of 20)	40310	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
226087	chr9	62800701	62801650	+	0	NA	promoter-TSS (NR_121647)	promoter-TSS (NR_121647)	-290	NR_121647	103352539		NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
213890	chr7	142451321	142451580	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-23077	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
43088	chr11	74770351	74770950	+	0	NA	intron (NM_001098638, intron 1 of 5)	intron (NM_001098638, intron 1 of 5)	21801	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
80175	chr16	2119521	2120330	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-13172	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
56161	chr12	111400721	111400980	+	0	NA	Intergenic	AluSx|SINE|Alu	-5073	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
129269	chr2	68401151	68401450	+	0	NA	Intergenic	L1PA7|LINE|L1	36018	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
87943	chr16	79497851	79498350	+	0	NA	Intergenic	Intergenic	102637	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
158443	chr22	50608121	50608850	+	0	NA	intron (NM_012324, intron 10 of 11)	intron (NM_012324, intron 10 of 11)	7692	NM_012324	23542		NM_012324	ENSG00000008735	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
139082	chr2	218872621	218872880	+	0	NA	intron (NM_006522, intron 3 of 3)	intron (NM_006522, intron 3 of 3)	-8102	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
166114	chr3	111076751	111077250	+	0	NA	intron (NM_001243288, intron 1 of 8)	intron (NM_001243288, intron 1 of 8)	5184	NM_001243288	25945		NM_015480	ENSG00000177707	NECTIN3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3	nectin cell adhesion molecule 3	protein-coding
231240	chr9	129980071	129980950	+	0	NA	intron (NM_001363755, intron 2 of 15)	intron (NM_001363755, intron 2 of 15)	62679	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
126330	chr2	27364151	27364650	+	0	NA	TTS (NM_001318969)	TTS (NM_001318969)	5652	NM_001318965	8890		NM_015636	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta|VWM4	eukaryotic translation initiation factor 2B subunit delta	protein-coding
94370	chr17	28922821	28923330	+	0	NA	intron (NM_020889, intron 4 of 8)	L1ME4b|LINE|L1	-3200	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
206551	chr7	35645401	35645900	+	0	NA	intron (NM_022373, intron 5 of 8)	MER6B|DNA|TcMar-Tigger	49485	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
116050	chr19	17212571	17212730	+	0	NA	3' UTR (NM_001130065, exon 40 of 40)	3' UTR (NM_001130065, exon 40 of 40)	-2707	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
140987	chr2	238025051	238025350	+	0	NA	intron (NM_001278306, intron 4 of 8)	intron (NM_001278306, intron 4 of 8)	-35801	NM_016510	51540		NM_016510	ENSG00000132330	SCLY	SCL|hSCL	selenocysteine lyase	protein-coding
159675	chr3	15428411	15429180	+	0	NA	intron (NM_033083, intron 1 of 5)	UCON29|DNA|PiggyBac?	1197	NM_033083	85403		NM_033083	ENSG00000144597	EAF1	-	ELL associated factor 1	protein-coding
55975	chr12	110120971	110121880	+	0	NA	Intergenic	MamGypsy2-I|LTR|Gypsy	-2932	NM_031473	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
56868	chr12	120285501	120285850	+	0	NA	Intergenic	AluSz|SINE|Alu	-6105	NM_001385735	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
106262	chr18	12375371	12375530	+	0	NA	intron (NM_006796, intron 1 of 16)	AluJr|SINE|Alu	1777	NM_006796	10939		NM_006796	ENSG00000141385	AFG3L2	OPA12|SCA28|SPAX5	AFG3 like matrix AAA peptidase subunit 2	protein-coding
72163	chr15	29115771	29116230	+	0	NA	intron (NM_001353793, intron 12 of 12).2	CpG	45342	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
160068	chr3	18715851	18716830	+	0	NA	Intergenic	L2b|LINE|L2	-270748	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
81672	chr16	11093351	11093650	+	0	NA	intron (NM_001243403, intron 18 of 20)	intron (NM_001243403, intron 18 of 20)	148936	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
128618	chr2	61180251	61180950	+	0	NA	intron (NR_152210, intron 1 of 5)	intron (NR_152210, intron 1 of 5)	3182	NR_152212	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
204145	chr7	2379151	2379250	+	0	NA	exon (NM_001362792, exon 18 of 20)	exon (NM_001362792, exon 18 of 20)	24373	NM_001362791	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
121415	chr19	47001901	47002100	+	0	NA	3' UTR (NM_004491, exon 7 of 7)	3' UTR (NM_004491, exon 7 of 7)	-17837	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
153834	chr22	29948971	29949200	+	0	NA	intron (NM_153051, intron 1 of 18)	AluJb|SINE|Alu	-57964	NR_106876	102466742		NR_106876	ENSG00000275818	MIR6818	hsa-mir-6818	microRNA 6818	ncRNA
68103	chr14	75305121	75305480	+	0	NA	Intergenic	AluJo|SINE|Alu	10896	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
58955	chr13	19784421	19784680	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1514	NR_149053	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
41710	chr11	66649071	66649250	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluSx1|SINE|Alu	10457	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
145725	chr20	45049571	45050380	+	0	NA	intron (NM_006282, intron 10 of 10)	intron (NM_006282, intron 10 of 10)	51152	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
65126	chr14	44959351	44959650	+	0	NA	intron (NM_017658, intron 1 of 4)	intron (NM_017658, intron 1 of 4)	1985	NM_001308112	54813		NM_017658	ENSG00000179454	KLHL28	BTBD5	kelch like family member 28	protein-coding
18040	chr1	160608401	160608600	+	0	NA	non-coding (NR_104399, exon 6 of 6)	non-coding (NR_104399, exon 6 of 6)	-28984	NM_001184882	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
97551	chr17	44076001	44076680	+	0	NA	TTS (NM_001384167)	TTS (NM_001384167)	5429	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
225561	chr9	35911821	35912080	+	0	NA	TTS (NM_001348107)	TTS (NM_001348107)	2460	NM_001348107	158376		NM_001348107	ENSG00000235387	SPAAR	LINC00961|SPAR	small regulatory polypeptide of amino acid response	protein-coding
130170	chr2	76781221	76781350	+	0	NA	intron (NR_146416, intron 1 of 1)	L1PA2|LINE|L1	-204680	NR_110284	101927907		NR_110284	ENSG00000234653	LRRTM4-AS1	-	LRRTM4 antisense RNA 1	ncRNA
125252	chr2	10425021	10425280	+	0	NA	intron (NM_134421, intron 5 of 5)	intron (NM_134421, intron 5 of 5)	21699	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
211521	chr7	105310901	105311100	+	0	NA	intron (NM_001350742, intron 2 of 16)	intron (NM_001350742, intron 2 of 16)	-12221	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
101020	chr17	64775521	64775780	+	0	NA	intron (NR_026899, intron 3 of 12)	intron (NR_026899, intron 3 of 12)	-5109	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
230676	chr9	128718971	128719330	+	0	NA	intron (NM_001317926, intron 18 of 21)	AluSc8|SINE|Alu	4977	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
124008	chr19	55463221	55463480	+	0	NA	Intergenic	Intergenic	-1708	NM_024710	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
226314	chr9	68979601	68980000	+	0	NA	intron (NM_001278253, intron 13 of 13)	intron (NM_001278253, intron 13 of 13)	-3959	NR_110647	101927069		NR_110647		LOC101927069	-	uncharacterized LOC101927069	ncRNA
19504	chr1	175190971	175191130	+	0	NA	intron (NM_001162894, intron 1 of 3)	L2c|LINE|L2	1726	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
79026	chr16	65401	66050	+	0	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	6906	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
231573	chr9	131502401	131503600	+	0	NA	promoter-TSS (NM_001136114)	promoter-TSS (NM_001136114)	82	NM_001353196	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
48913	chr12	12611271	12612670	+	0	NA	promoter-TSS (NM_001310)	promoter-TSS (NM_001310)	94	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
108574	chr18	75025851	75025950	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	179613	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
14561	chr1	144947571	144947750	+	0	NA	intron (NM_001385228, intron 3 of 8)	intron (NM_001385228, intron 3 of 8)	-146636	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
121688	chr19	47519221	47519480	+	0	NA	Intergenic	Intergenic	-4287	NR_038456	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
141853	chr20	561671	562050	+	0	NA	Intergenic	Intergenic	-18070	NM_177560	1457		NM_001895	ENSG00000101266	CSNK2A1	CK2A1|CKII|Cka1|Cka2|OCNDS	casein kinase 2 alpha 1	protein-coding
166636	chr3	119676721	119677880	+	0	NA	promoter-TSS (NR_167772)	promoter-TSS (NR_167772)	106	NR_167771	10063		NM_005694	ENSG00000138495	COX17	-	cytochrome c oxidase copper chaperone COX17	protein-coding
35264	chr11	865521	866250	+	0	NA	intron (NM_001025235, intron 7 of 8)	intron (NM_001025235, intron 7 of 8)	21439	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
128485	chr2	58066671	58067030	+	0	NA	intron (NM_001288836, intron 3 of 13)	MLT2A2|LTR|ERVL	20044	NM_006296	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
73205	chr15	41550521	41550980	+	0	NA	Intergenic	AluSz|SINE|Alu	-6493	NM_015540	26015		NM_015540	ENSG00000103932	RPAP1	-	RNA polymerase II associated protein 1	protein-coding
47485	chr12	3936171	3936330	+	0	NA	Intergenic	L1MB1|LINE|L1	-62802	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
178599	chr4	151941121	151941380	+	0	NA	Intergenic	Intergenic	-159503	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
74114	chr15	54611921	54612050	+	0	NA	intron (NM_001080534, intron 29 of 31)	intron (NM_001080534, intron 29 of 31)	-444762	NR_135679	105370829		NR_135679	ENSG00000260937	LOC105370829	-	uncharacterized LOC105370829	ncRNA
54784	chr12	94205801	94206650	+	0	NA	intron (NM_005761, intron 4 of 30)	intron (NM_005761, intron 4 of 30)	-56394	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
15936	chr1	151822171	151822850	+	0	NA	intron (NM_005060, intron 2 of 10)	intron (NM_005060, intron 2 of 10)	3586	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
164433	chr3	59235371	59236130	+	0	NA	Intergenic	Intergenic	-185718	NM_001351534	200844		NM_198463	ENSG00000163689	CFAP20DC	C3orf67	CFAP20 domain containing	protein-coding
147476	chr20	59137651	59137750	+	0	NA	intron (NM_001384354, intron 1 of 7)	intron (NM_001384354, intron 1 of 7)	14312	NM_001384354	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
138875	chr2	217090071	217090230	+	0	NA	Intergenic	LTR103_Mam|LTR|ERV1?	-192583	NR_133642	105373877		NR_133642		DIRC3-AS1	-	DIRC3 antisense RNA 1	ncRNA
165035	chr3	71418801	71419630	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluSx1|SINE|Alu	-114444	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
114779	chr19	13762121	13763280	+	0	NA	exon (NM_001320568, exon 9 of 9)	exon (NM_001320568, exon 9 of 9)	-1822	NM_032285	84245		NM_032285	ENSG00000037757	MRI1	M1Pi|MRDI|MTNA|Ypr118w	methylthioribose-1-phosphate isomerase 1	protein-coding
123540	chr19	54362651	54363550	+	0	NA	intron (NM_001289027, intron 1 of 8).3	intron (NM_001289027, intron 1 of 8).3	1831	NR_110279	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
138340	chr2	203859101	203859750	+	0	NA	Intergenic	MIR3|SINE|MIR	-8346	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
172463	chr4	2040121	2040680	+	0	NA	Intergenic	CpG	-1593	NM_001168243	401115		NM_001141936	ENSG00000243449	NICOL1	C4orf48|CHR4_55|NICOL	NELL2 interacting cell ontogeny regulator 1	protein-coding
58437	chr12	131949391	131951380	+	0	NA	intron (NM_015409, intron 1 of 52)	CpG	443	NM_015409	57634		NM_015409	ENSG00000183495	EP400	CAGH32|P400|TNRC12	E1A binding protein p400	protein-coding
104995	chr17	82015321	82015580	+	0	NA	intron (NM_001251888, intron 13 of 16)	intron (NM_001251888, intron 13 of 16)	7428	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
66389	chr14	61493401	61494080	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	76454	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
46075	chr11	122795971	122796480	+	0	NA	exon (NM_001363365, exon 8 of 14)	exon (NM_001363365, exon 8 of 14)	-42275	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
14292	chr1	143787851	143787950	+	0	NA	Intergenic	Intergenic	-4595	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
40421	chr11	64167771	64168150	+	0	NA	Intergenic	Intergenic	-1847	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
1085	chr1	1934451	1934950	+	0	NA	intron (NM_001304360, intron 25 of 38)	intron (NM_001304360, intron 25 of 38)	-15421	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
142828	chr20	17504601	17505890	+	0	NA	intron (NM_001195, intron 5 of 7)	intron (NM_001195, intron 5 of 7)	26134	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
187578	chr5	142816521	142816900	+	0	NA	intron (NM_001349547, intron 1 of 21)	L2c|LINE|L2	45483	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
181150	chr5	38831951	38832150	+	0	NA	intron (NR_109951, intron 1 of 3)	(CT)n|Simple_repeat|Simple_repeat	13779	NR_109951	101929768		NR_109951		OSMR-DT	CTD-2127H9.1|OSMR-AS1	OSMR divergent transcript	ncRNA
96759	chr17	41708101	41708500	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-4031	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
64466	chr14	24262901	24263900	+	0	NA	promoter-TSS (NM_000359)	promoter-TSS (NM_000359)	-223	NM_000359	7051		NM_000359	ENSG00000092295	TGM1	ARCI1|ICR2|KTG|LI|LI1|TGASE|TGK	transglutaminase 1	protein-coding
207843	chr7	50345521	50346750	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	27087	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
65058	chr14	39275071	39275430	+	0	NA	intron (NM_203355, intron 1 of 22)	AluSx1|SINE|Alu	7865	NM_001354144	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
118245	chr19	35223201	35223600	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	5325	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
79851	chr16	1469921	1470180	+	0	NA	intron (NM_001287, intron 1 of 24)	L1MB2|LINE|L1	4978	NM_001287	1186		NM_001287	ENSG00000103249	CLCN7	CLC-7|CLC7|HOD|OPTA2|OPTB4|PPP1R63	chloride voltage-gated channel 7	protein-coding
45894	chr11	120248751	120249050	+	0	NA	TTS (NR_038829)	TTS (NR_038829)	8760	NM_014352	25833		NM_014352	ENSG00000137709	POU2F3	Epoc-1|OCT-11|OCT11|OTF-11|PLA-1|PLA1|Skn-1a	POU class 2 homeobox 3	protein-coding
236132	chrX	57907821	57908500	+	0	NA	exon (NM_007156, exon 1 of 1)	exon (NM_007156, exon 1 of 1)	2298	NM_007156	7789		NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger X-linked duplicated A	protein-coding
229705	chr9	124773051	124773350	+	0	NA	Intergenic	AluSp|SINE|Alu	-1889	NM_001489	2649		NM_001489	ENSG00000148200	NR6A1	CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR	nuclear receptor subfamily 6 group A member 1	protein-coding
232645	chr9	136474101	136474500	+	0	NA	exon (NM_001276418, exon 2 of 29)	exon (NM_001276418, exon 2 of 29)	-8710	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
196369	chr6	43244901	43245100	+	0	NA	intron (NM_032538, intron 1 of 14)	intron (NM_032538, intron 1 of 14)	1519	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
176587	chr4	98910751	98911050	+	0	NA	intron (NM_001331017, intron 1 of 7)	AluSz|SINE|Alu	18233	NM_001130678	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
187986	chr5	149519521	149520080	+	0	NA	intron (NM_001025105, intron 4 of 10)	intron (NM_001025105, intron 4 of 10)	30565	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
66187	chr14	60726021	60726430	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1874	NM_017420	51804		NM_017420	ENSG00000100625	SIX4	AREC3	SIX homeobox 4	protein-coding
78462	chr15	92884901	92885730	+	0	NA	intron (NR_037601, intron 2 of 5)	intron (NR_037601, intron 2 of 5)	2019	NR_037602	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
160172	chr3	23324751	23325050	+	0	NA	intron (NM_001370225, intron 3 of 5)	intron (NM_001370225, intron 3 of 5)	121573	NM_001370228	7325		NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
105756	chr18	2762521	2763130	+	0	NA	intron (NM_015295, intron 36 of 47)	intron (NM_015295, intron 36 of 47)	-84181	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
199230	chr6	111818321	111819230	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	54296	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
129137	chr2	65366571	65366850	+	0	NA	promoter-TSS (NM_001128210)	promoter-TSS (NM_001128210)	68	NM_001128210	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
85862	chr16	57031671	57032250	+	0	NA	intron (NM_001384955, intron 11 of 47)	intron (NM_001384955, intron 11 of 47)	42403	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
198920	chr6	110185651	110186330	+	0	NA	intron (NM_015891, intron 1 of 14)	L1MEg|LINE|L1	5563	NM_015891	51362		NM_015891	ENSG00000168438	CDC40	EHB3|PCH15|PRP17|PRPF17	cell division cycle 40	protein-coding
182778	chr5	68392651	68392950	+	0	NA	Intergenic	Intergenic	100223	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
79158	chr16	279751	279850	+	0	NA	promoter-TSS (NM_001176)	promoter-TSS (NM_001176)	-791	NM_001176	398		NM_001176	ENSG00000242173	ARHGDIG	RHOGDI-3	Rho GDP dissociation inhibitor gamma	protein-coding
96279	chr17	39917221	39917480	+	0	NA	5' UTR (NM_018530, exon 1 of 8)	5' UTR (NM_018530, exon 1 of 8)	190	NM_001369402	55876		NM_018530	ENSG00000073605	GSDMB	GSDMB-1|GSDML|PP4052|PRO2521	gasdermin B	protein-coding
171642	chr3	197612851	197613930	+	0	NA	TTS (NR_003266)	TTS (NR_003266)	14491	NR_003266	220729		NR_003266	ENSG00000291091	SDHAP4	-	SDHA pseudogene 4	pseudo
130723	chr2	86748151	86748330	+	0	NA	intron (NM_022780, intron 2 of 8)	intron (NM_022780, intron 2 of 8)	-27118	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
82736	chr16	21301451	21301850	+	0	NA	intron (NR_026675, intron 1 of 2)	CpG	801	NR_026675	400508		NM_001101368		CRYM-AS1	NCRNA00169	CRYM antisense RNA 1	ncRNA
216429	chr8	19438501	19438700	+	0	NA	intron (NR_148900, intron 5 of 9)	MER58A|DNA|hAT-Charlie	124624	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
110771	chr19	2417021	2417280	+	0	NA	intron (NM_001385642, intron 12 of 17)	MER58A|DNA|hAT-Charlie	10436	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
18611	chr1	165768471	165769900	+	0	NA	promoter-TSS (NM_019026)	promoter-TSS (NM_019026)	256	NR_125374	100147773		NR_125374		TMCO1-AS1	-	TMCO1 antisense RNA 1	ncRNA
207221	chr7	43660721	43661100	+	0	NA	intron (NM_001371313, intron 1 of 8)	L2c|LINE|L2	68613	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
36909	chr11	10792271	10793200	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	8873	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
76176	chr15	73127321	73127600	+	0	NA	intron (NM_001172623, intron 4 of 27)	MER20|DNA|hAT-Charlie	74976	NM_001172623	4756		NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
203400	chr7	16521	16970	+	0	NA	Intergenic	(ACCCTA)n|Simple_repeat|Simple_repeat	132693	NR_134325	102723672		NR_134325		LINC03015	-	long intergenic non-protein coding RNA 3015	ncRNA
143287	chr20	25281351	25282280	+	0	NA	intron (NM_002862, intron 11 of 19)	intron (NM_002862, intron 11 of 19)	33730	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
126798	chr2	30337051	30338080	+	0	NA	Intergenic	Intergenic	-9081	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
233593	chrX	320301	320850	+	0	NA	non-coding (NR_027231, exon 2 of 2)	non-coding (NR_027231, exon 2 of 2)	1430	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
228393	chr9	99129971	99130130	+	0	NA	intron (NM_001130916, intron 2 of 7)	L1M6B|LINE|L1	24937	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
50607	chr12	48675021	48675650	+	0	NA	intron (NM_017822, intron 4 of 9)	AluSx|SINE|Alu	6903	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
161927	chr3	46076671	46076830	+	0	NA	intron (NM_001381860, intron 1 of 3)	intron (NM_001381860, intron 1 of 3)	9094	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
192894	chr6	27505471	27506400	+	0	NA	Intergenic	Intergenic	-32817	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
120973	chr19	45714151	45714450	+	0	NA	intron (NM_001329633, intron 1 of 1)	intron (NM_001329633, intron 1 of 1)	978	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
185340	chr5	126852271	126852700	+	0	NA	Intergenic	AluSz|SINE|Alu	75349	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
185875	chr5	132662051	132662400	+	0	NA	Intergenic	Intergenic	4052	NM_002188	3596		NM_002188	ENSG00000169194	IL13	IL-13|P600	interleukin 13	protein-coding
227958	chr9	94864001	94864400	+	0	NA	intron (NM_032823, intron 5 of 14)	L2b|LINE|L2	54238	NR_031755	100313780		NR_031755	ENSG00000252153	MIR2278	mir-2278	microRNA 2278	ncRNA
22785	chr1	224426751	224428030	+	0	NA	intron (NM_001115113, intron 3 of 13)	intron (NM_001115113, intron 3 of 13)	-7250	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
153007	chr22	23188221	23188480	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	7841	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
199384	chr6	116275171	116276650	+	0	NA	3' UTR (NM_003309, exon 1 of 1)	3' UTR (NM_003309, exon 1 of 1)	4020	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
168342	chr3	141879601	141879880	+	0	NA	intron (NM_001679, intron 1 of 6)	AluSz|SINE|Alu	3097	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
208526	chr7	70577851	70577950	+	0	NA	intron (NM_015570, intron 5 of 18)	AluY|SINE|Alu	-554244	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
49125	chr12	14883621	14883880	+	0	NA	intron (NM_001190839, intron 3 of 4)	AluSz6|SINE|Alu	2104	NM_000900	4256		NM_000900	ENSG00000111341	MGP	GIG36|MGLAP|NTI	matrix Gla protein	protein-coding
74535	chr15	60487821	60488080	+	0	NA	TTS (NM_002943)	TTS (NM_002943)	8772	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
130624	chr2	86033871	86034030	+	0	NA	intron (NM_015425, intron 27 of 33)	intron (NM_015425, intron 27 of 33)	71936	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
227608	chr9	92740851	92740950	+	0	NA	intron (NM_001003800, intron 1 of 6)	intron (NM_001003800, intron 1 of 6)	23933	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
83982	chr16	29339151	29339450	+	0	NA	intron (NR_002939, intron 5 of 8)	intron (NR_002939, intron 5 of 8)	37013	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
169201	chr3	156815471	156815630	+	0	NA	intron (NR_038387, intron 1 of 2)	intron (NR_038387, intron 1 of 2)	1512	NR_038387	730091		NR_038387	ENSG00000240875	LINC00886	-	long intergenic non-protein coding RNA 886	ncRNA
193727	chr6	31205551	31205650	+	0	NA	Intergenic	AluSp|SINE|Alu	7840	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
40509	chr11	64274901	64275300	+	0	NA	intron (NM_032989, intron 2 of 3)	intron (NM_032989, intron 2 of 3)	4569	NM_001378084	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
38764	chr11	47162651	47163300	+	0	NA	TTS (NM_001278222)	TTS (NM_001278222)	13904	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
69707	chr14	98190921	98191180	+	0	NA	Intergenic	Intergenic	-212926	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
149647	chr21	33547501	33548030	+	0	NA	intron (NM_001291412, intron 2 of 10)	AluY|SINE|Alu	-2897	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
217374	chr8	28078551	28080450	+	0	NA	intron (NM_001010906, intron 1 of 18)	AluSg|SINE|Alu	4436	NM_001010906	389643		NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC|SLIPGC	nuclear GTPase, germinal center associated	protein-coding
116444	chr19	18044571	18046230	+	0	NA	Intergenic	MIRb|SINE|MIR	37230	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
104482	chr17	81127001	81127200	+	0	NA	intron (NM_001080395, intron 6 of 13)	intron (NM_001080395, intron 6 of 13)	-1151	NR_029897	442906		NR_029897	ENSG00000283604	MIR338	MIRN338|hsa-mir-338|mir-338	microRNA 338	ncRNA
168193	chr3	141049771	141050130	+	0	NA	Intergenic	L2c|LINE|L2	-1397	NM_080862	92369		NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
11808	chr1	92830151	92830250	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1786	NR_146333	6125		NM_000969	ENSG00000122406	RPL5	L5|MSTP030|PPP1R135|uL18	ribosomal protein L5	protein-coding
199017	chr6	111105771	111105930	+	0	NA	intron (NM_018593, intron 1 of 5)	intron (NM_018593, intron 1 of 5)	-7984	NR_145796	109623478		NR_145796		SNORD166	-	small nucleolar RNA, C/D box 166	snoRNA
228099	chr9	96447171	96447530	+	0	NA	Intergenic	Intergenic	-2819	NM_014282	22927		NM_014282	ENSG00000130956	HABP4	IHABP-4|IHABP4|Ki-1/57|SERBP1L	hyaluronan binding protein 4	protein-coding
114746	chr19	13247871	13248130	+	0	NA	intron (NM_023035, intron 30 of 46)	LTR16C|LTR|ERVL	97589	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
93935	chr17	21307051	21307350	+	0	NA	intron (NM_145109, intron 9 of 11)	MER21C|LTR|ERVL	19164	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
147449	chr20	58982621	58983950	+	0	NA	intron (NM_198976, intron 1 of 14)	AluSx1|SINE|Alu	2029	NM_198976	51497		NM_016397	ENSG00000101158	NELFCD	HSPC130|NELF-C|NELF-D|TH1|TH1L	negative elongation factor complex member C/D	protein-coding
64280	chr14	23366351	23366450	+	0	NA	Intergenic	CpG	-1228	NM_001385607	10278		NM_005864	ENSG00000100842	EFS	CAS3|CASS3|EFS1|EFS2|HEFS|SIN	embryonal Fyn-associated substrate	protein-coding
211345	chr7	104947351	104947650	+	0	NA	Intergenic	AluSz6|SINE|Alu	-20855	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
4317	chr1	20430401	20430600	+	0	NA	Intergenic	Intergenic	-1706	NR_033887	339505		NR_033887		LINC01141	-	long intergenic non-protein coding RNA 1141	ncRNA
47296	chr12	1664601	1664800	+	0	NA	Intergenic	AluJb|SINE|Alu	-4320	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
11101	chr1	85580451	85581430	+	0	NA	5' UTR (NM_001554, exon 1 of 5)	5' UTR (NM_001554, exon 1 of 5)	179	NM_001554	3491		NM_001554	ENSG00000142871	CCN1	CYR61|GIG1|IGFBP10	cellular communication network factor 1	protein-coding
15109	chr1	148628451	148629050	+	0	NA	intron (NM_001364008, intron 2 of 4)	intron (NM_001364008, intron 2 of 4)	-33033	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
228142	chr9	96853071	96855980	+	0	NA	promoter-TSS (NM_001001662)	promoter-TSS (NM_001001662)	-11	NM_001346995	158431		NM_001001662	ENSG00000196597	ZNF782	-	zinc finger protein 782	protein-coding
46493	chr11	128344071	128344430	+	0	NA	Intergenic	L2|LINE|L2	135484	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
211870	chr7	111026721	111027500	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-63896	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
202141	chr6	155106771	155107130	+	0	NA	promoter-TSS (NM_001384547)	promoter-TSS (NM_001384547)	-37	NM_001384547	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
180477	chr5	12745501	12745700	+	0	NA	intron (NR_033383, intron 3 of 3)	(T)n|Simple_repeat|Simple_repeat	77741	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
196063	chr6	42198101	42198500	+	0	NA	Intergenic	L2a|LINE|L2	-3344	NM_002098	2979		NM_002098	ENSG00000112599	GUCA1B	GCAP 2|GCAP-2|GCAP-II|GCAP2|GUCA2|RP48	guanylate cyclase activator 1B	protein-coding
124464	chr19	58523801	58524630	+	0	NA	intron (NM_001316980, intron 1 of 2)	AluSq2|SINE|Alu	-4405	NM_001316979	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
2173	chr1	8496151	8497350	+	0	NA	intron (NM_012102, intron 10 of 23)	intron (NM_012102, intron 10 of 23)	-1837	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
152578	chr22	21123101	21123300	+	0	NA	TTS (NR_037566)	TTS (NR_037566)	20184	NR_037566	400892		NM_207474	ENSG00000291044	BCRP2	BCR-2|BCR2|BCRL2	BCR pseudogene 2	pseudo
220372	chr8	99888351	99888650	+	0	NA	intron (NM_004374, intron 2 of 3)	AluSg|SINE|Alu	5207	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
128992	chr2	64749551	64752330	+	0	NA	Intergenic	Intergenic	-97027	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
102991	chr17	76736801	76738900	+	0	NA	promoter-TSS (NM_003016)	promoter-TSS (NM_003016)	172	NM_001242532	79157		NM_024311	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
83791	chr16	28756871	28757030	+	0	NA	intron (NM_001287250, intron 1 of 6)	MER113|DNA|hAT-Charlie	4515	NM_001287250	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
154332	chr22	32175801	32176400	+	0	NA	Intergenic	CpG	-16797	NM_001010859	150297		NM_001010859	ENSG00000205856	C22orf42	dJ90G24.6	chromosome 22 open reading frame 42	protein-coding
89471	chr16	89093651	89094650	+	0	NA	intron (NM_001127214, intron 1 of 9)	CpG	298	NM_001284316	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
100647	chr17	63693401	63694000	+	0	NA	exon (NM_203351, exon 17 of 17)	exon (NM_203351, exon 17 of 17)	6425	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
230649	chr9	128695771	128696130	+	0	NA	3' UTR (NM_003011, exon 8 of 8)	3' UTR (NM_003011, exon 8 of 8)	5976	NM_001248001	6418		NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|MRD58|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
93457	chr17	18697551	18698650	+	0	NA	5' UTR (NM_001353221, exon 1 of 8)	5' UTR (NM_001353221, exon 1 of 8)	102	NM_001353226	147166		NM_001037330	ENSG00000291110	TRIM16L	TRIM70	tripartite motif containing 16 like (pseudogene)	pseudo
7189	chr1	32270951	32271550	+	0	NA	intron (NM_005356, intron 1 of 12)	AluJo|SINE|Alu	-2861	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
169080	chr3	153643321	153643930	+	0	NA	intron (NR_146713, intron 3 of 6)	L1PBa1|LINE|L1	118901	NR_146713	105374165		NR_146713		LINC02006	-	long intergenic non-protein coding RNA 2006	ncRNA
30747	chr10	84193321	84193600	+	0	NA	Intergenic	Intergenic	-1077	NM_001171971	92211		NM_033100	ENSG00000148600	CDHR1	CORD15|PCDH21|PRCAD|RP65	cadherin related family member 1	protein-coding
145892	chr20	45955951	45956380	+	0	NA	intron (NM_022095, intron 17 of 27)	intron (NM_022095, intron 17 of 27)	16038	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
191538	chr6	11416551	11417080	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-34467	NR_073131	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
201459	chr6	148700921	148701600	+	0	NA	Intergenic	Intergenic	-45770	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
131457	chr2	96340021	96340550	+	0	NA	intron (NM_001281712, intron 1 of 16)	L2|LINE|L2	4519	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
68078	chr14	75272151	75272530	+	0	NA	Intergenic	L2a|LINE|L2	-6488	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
176806	chr4	102530921	102531580	+	0	NA	intron (NM_001382628, intron 2 of 22)	intron (NM_001382628, intron 2 of 22)	-28764	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
5643	chr1	26275151	26277050	+	0	NA	intron (NM_001319944, intron 12 of 13)	intron (NM_001319944, intron 12 of 13)	-3986	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
175061	chr4	54016621	54016880	+	0	NA	intron (NM_012110, intron 3 of 5)	intron (NM_012110, intron 3 of 5)	-29468	NR_027153	402176		NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo
62402	chr13	99284521	99284780	+	0	NA	intron (NR_026644, intron 4 of 8)	L1MC4|LINE|L1	22749	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
121293	chr19	46726071	46726430	+	0	NA	intron (NM_001039877, intron 9 of 17)	intron (NM_001039877, intron 9 of 17)	-9123	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
137041	chr2	190863701	190864130	+	0	NA	Intergenic	Intergenic	-16906	NM_001256310	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
126766	chr2	30247821	30248280	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	16516	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
98645	chr17	47818551	47818850	+	0	NA	intron (NM_145798, intron 5 of 22)	intron (NM_145798, intron 5 of 22)	3094	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
79396	chr16	665471	665830	+	0	NA	intron (NM_145294, intron 34 of 40)	intron (NM_145294, intron 34 of 40)	-2433	NM_001352287	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
160404	chr3	28234171	28234830	+	0	NA	Intergenic	Intergenic	-7119	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
221374	chr8	123387821	123388080	+	0	NA	intron (NM_014109, intron 1 of 27)	intron (NM_014109, intron 1 of 27)	8497	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
83266	chr16	23975401	23975800	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	139617	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
35497	chr11	1523471	1523630	+	0	NA	Intergenic	Intergenic	-36771	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
28394	chr10	47557821	47558250	+	0	NA	Intergenic	Intergenic	-4512	NR_024495	642826		NR_024495		BMS1P2	BMS1LP2|BMS1LP6|BMS1P6|bA144G6.1	BMS1 pseudogene 2	pseudo
150681	chr21	43646501	43647000	+	0	NA	intron (NM_007031, intron 3 of 8)	intron (NM_007031, intron 3 of 8)	12738	NM_007031	11077		NM_007031	ENSG00000160207	HSF2BP	MEILB2|POF19	heat shock transcription factor 2 binding protein	protein-coding
236513	chrX	72021951	72022250	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	-22309	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
103573	chr17	78688921	78689700	+	0	NA	intron (NM_017456, intron 10 of 12)	Charlie3|DNA|hAT-Charlie	27722	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
3591	chr1	16226251	16226750	+	0	NA	Intergenic	Intergenic	10683	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
20682	chr1	200487751	200488050	+	0	NA	Intergenic	Intergenic	-77864	NM_001281293	23528		NM_012482	ENSG00000162702	ZNF281	GZP1|ZBP-99|ZBP99|ZNP-99	zinc finger protein 281	protein-coding
233020	chr9	137018601	137020130	+	0	NA	intron (NM_212533, intron 10 of 48)	intron (NM_212533, intron 10 of 48)	-8099	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
9153	chr1	45523251	45523350	+	0	NA	promoter-TSS (NM_001202431)	promoter-TSS (NM_001202431)	-410	NM_001202431	5052		NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
206928	chr7	38227521	38227780	+	0	NA	intron (NM_032016, intron 7 of 8)	intron (NM_032016, intron 7 of 8)	45997	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
112322	chr19	5903351	5905170	+	0	NA	promoter-TSS (NM_001193375)	promoter-TSS (NM_001193375)	-470	NM_001193375	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
140569	chr2	233326721	233327830	+	0	NA	intron (NM_000541, intron 7 of 15)	intron (NM_000541, intron 7 of 15)	19459	NM_000541	6295		NM_000541	ENSG00000130561	SAG	RP47|RP96|S-AG	S-antigen visual arrestin	protein-coding
87984	chr16	80650171	80650530	+	0	NA	intron (NM_152342, intron 2 of 6)	L1MA2|LINE|L1	-77542	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
46738	chr11	128964701	128964900	+	0	NA	TTS (NM_014715)	TTS (NM_014715)	-21401	NM_022112	63970		NM_022112	ENSG00000120471	TP53AIP1	P53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein-coding
116007	chr19	17121951	17122250	+	0	NA	intron (NM_004145, intron 2 of 39)	Tigger18a|DNA|TcMar-Tigger	29865	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
126475	chr2	28377951	28378250	+	0	NA	Intergenic	Intergenic	-14758	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
227345	chr9	89465721	89466080	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	13990	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
114542	chr19	12868821	12869450	+	0	NA	exon (NM_014975, exon 22 of 26)	exon (NM_014975, exon 22 of 26)	12314	NM_001375	1777		NM_001375	ENSG00000105612	DNASE2	AIPCS|DNASE2A|DNL|DNL2	deoxyribonuclease 2, lysosomal	protein-coding
158833	chr3	9787821	9788280	+	0	NA	intron (NM_133480, intron 4 of 7)	intron (NM_133480, intron 4 of 7)	-4445	NM_001024959	10093		NM_005718	ENSG00000241553	ARPC4	ARC20|DEVLO|P20-ARC	actin related protein 2/3 complex subunit 4	protein-coding
106584	chr18	22168021	22168530	+	0	NA	non-coding (NR_102763, exon 2 of 2)	non-coding (NR_102763, exon 2 of 2)	693	NR_102763	100128893		NR_102763	ENSG00000266010	GATA6-AS1	BM742401|locus5689	GATA6 antisense RNA 1 (head to head)	ncRNA
195474	chr6	37055371	37055730	+	0	NA	Intergenic	Intergenic	49895	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
12701	chr1	109489701	109490030	+	0	NA	intron (NM_001350177, intron 8 of 11)	intron (NM_001350177, intron 8 of 11)	-4171	NM_001134402	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
227870	chr9	93670521	93670980	+	0	NA	intron (NM_005392, intron 17 of 21)	intron (NM_005392, intron 17 of 21)	75909	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
65235	chr14	49866551	49866980	+	0	NA	Intergenic	AluSx|SINE|Alu	-3916	NR_027260	378706		NR_027260	ENSG00000274012	RN7SL2	7L1C|7L30.1|7SL1c|RNSRP2	RNA component of signal recognition particle 7SL2	scRNA
46569	chr11	128498621	128499180	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	23410	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
34603	chr10	133267351	133268280	+	0	NA	intron (NM_001164490, intron 18 of 19)	intron (NM_001164490, intron 18 of 19)	9053	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
182495	chr5	62804521	62804780	+	0	NA	Intergenic	L1PA2|LINE|L1	225831	NM_181506	100130733		NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
53385	chr12	64688851	64689150	+	0	NA	intron (NM_178169, intron 3 of 4)	intron (NM_178169, intron 3 of 4)	-66395	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
140680	chr2	234128651	234128830	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	78038	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
173481	chr4	9151951	9154080	+	0	NA	Intergenic	CpG	-20158	NM_001358418	100287045		NM_001358418	ENSG00000229924	FAM90A26	FAM90A26P	family with sequence similarity 90 member A26	protein-coding
161402	chr3	41219051	41219650	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	19845	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
237480	chrX	119789301	119789750	+	0	NA	intron (NM_001000, intron 2 of 2)	AluSz|SINE|Alu	-2041	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
232308	chr9	134642271	134642580	+	0	NA	intron (NM_001278074, intron 1 of 65)	CpG	620	NM_001278074	1289		NM_000093	ENSG00000130635	COL5A1	EDSC|EDSCL1|FMDMF	collagen type V alpha 1 chain	protein-coding
115730	chr19	16256521	16257580	+	0	NA	Intergenic	Intergenic	59139	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
136885	chr2	189300701	189301250	+	0	NA	Intergenic	AluJb|SINE|Alu	-121214	NM_000393	1290		NM_000393	ENSG00000204262	COL5A2	EDSC|EDSCL2	collagen type V alpha 2 chain	protein-coding
188131	chr5	150395871	150396130	+	0	NA	intron (NM_001371623, intron 23 of 26)	intron (NM_001371623, intron 23 of 26)	16756	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
2213	chr1	8726471	8726900	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	90955	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
90686	chr17	1727101	1727530	+	0	NA	exon (NM_001163809, exon 1 of 10)	exon (NM_001163809, exon 1 of 10)	2611	NM_001163809	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
109569	chr19	894571	894730	+	0	NA	Intergenic	Intergenic	1166	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
59198	chr13	22161751	22162380	+	0	NA	Intergenic	L1MB7|LINE|L1	-48220	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
157213	chr22	43184351	43184750	+	0	NA	intron (NM_015140, intron 1 of 13)	L2c|LINE|L2	2584	NM_015140	23170		NM_015140	ENSG00000100304	TTLL12	dJ526I14.2	tubulin tyrosine ligase like 12	protein-coding
117293	chr19	19486121	19486380	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	29298	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
5451	chr1	25613571	25613930	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-3041	NM_020379	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
36672	chr11	8225451	8225950	+	0	NA	intron (NM_001270428, intron 3 of 3)	intron (NM_001270428, intron 3 of 3)	38178	NR_073006	4004		NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
177021	chr4	106502251	106502350	+	0	NA	Intergenic	Intergenic	68676	NR_147150	105377355		NR_147150	ENSG00000249613	LINC02173	-	long intergenic non-protein coding RNA 2173	ncRNA
142104	chr20	2654321	2654580	+	0	NA	promoter-TSS (NR_002981)	promoter-TSS (NR_002981)	238	NR_003078	692213		NR_003078	ENSG00000221116	SNORD110	HBII-55	small nucleolar RNA, C/D box 110	snoRNA
129028	chr2	64946121	64946830	+	0	NA	Intergenic	Intergenic	-14028	NR_036586	400958		NR_036586		LINC02245	-	long intergenic non-protein coding RNA 2245	ncRNA
59405	chr13	25243971	25244450	+	0	NA	Intergenic	LTR12|LTR|ERV1	43278	NM_001385233	9107		NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
1954	chr1	6576751	6577250	+	0	NA	exon (NM_177540, exon 4 of 5)	exon (NM_177540, exon 4 of 5)	-2994	NM_001278648	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
157982	chr22	49834551	49835330	+	0	NA	Intergenic	AluY|SINE|Alu	-7067	NM_001304808	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
59891	chr13	30736501	30736800	+	0	NA	intron (NM_001629, intron 1 of 4)	intron (NM_001629, intron 1 of 4)	1107	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
18319	chr1	161176771	161178050	+	0	NA	promoter-TSS (NM_003779)	promoter-TSS (NM_003779)	97	NM_003779	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
209186	chr7	75408771	75408930	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1472	NR_104013	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
160047	chr3	18442851	18443350	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	1018	NM_001322875	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
162225	chr3	47058471	47059030	+	0	NA	intron (NR_146158, intron 15 of 21)	L1ME1|LINE|L1	47208	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
126562	chr2	28626051	28626580	+	0	NA	intron (NM_153021, intron 50 of 57)	intron (NM_153021, intron 50 of 57)	59958	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
216204	chr8	11867501	11868780	+	0	NA	promoter-TSS (NM_001908)	promoter-TSS (NM_001908)	-53	NM_001384723	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
97237	chr17	42849071	42849430	+	0	NA	exon (NM_009590, exon 2 of 4)	exon (NM_009590, exon 2 of 4)	-1934	NM_001277731	8639		NM_003734	ENSG00000131471	AOC3	HPAO|SSAO|VAP-1|VAP1	amine oxidase copper containing 3	protein-coding
226251	chr9	67716621	67716880	+	0	NA	TTS (NR_103833)	TTS (NR_103833)	-1438	NR_144466	105379807		NR_144466		LOC105379807	-	uncharacterized LOC105379807	ncRNA
123718	chr19	55045501	55046100	+	0	NA	intron (NM_001145971, intron 6 of 6).10	AluSq2|SINE|Alu	-7536	NM_001256017	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
47761	chr12	6543971	6544330	+	0	NA	intron (NM_001039670, intron 8 of 9)	intron (NM_001039670, intron 8 of 9)	8886	NM_001256799	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
109680	chr19	1033421	1034180	+	0	NA	intron (NM_201277, intron 4 of 5)	CpG	-6307	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
139633	chr2	225986421	225986680	+	0	NA	Intergenic	L1MB7|LINE|L1	-156244	NR_046102	646736		NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
232971	chr9	136968921	136969400	+	0	NA	promoter-TSS (NR_157392)	promoter-TSS (NR_157392)	-252	NR_157392	101928638		NM_001101674		LINC02692	C9orf141|PRR31	long intergenic non-protein coding RNA 2692	ncRNA
94860	chr17	31510221	31510880	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	22442	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
93610	chr17	19145521	19145780	+	0	NA	intron (NM_001353418, intron 3 of 3)	intron (NM_001353418, intron 3 of 3)	16974	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
142472	chr20	4169671	4170300	+	0	NA	intron (NM_175840, intron 1 of 7)	intron (NM_175840, intron 1 of 7)	21157	NM_175839	54498		NM_019025	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
54743	chr12	93781001	93781200	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	-43277	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
59356	chr13	24622751	24623250	+	0	NA	Intergenic	LTR12D|LTR|ERV1	42792	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
69219	chr14	92727521	92727980	+	0	NA	intron (NM_001008530, intron 3 of 14)	intron (NM_001008530, intron 3 of 14)	20877	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
92585	chr17	9239301	9240850	+	0	NA	3' UTR (NM_004822, exon 7 of 7)	3' UTR (NM_004822, exon 7 of 7)	-60957	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
1611	chr1	3672471	3672630	+	0	NA	intron (NM_001204185, intron 1 of 12)	intron (NM_001204185, intron 1 of 12)	-18122	NM_001204190	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
56378	chr12	113162621	113163280	+	0	NA	exon (NM_001111322, exon 17 of 20)	exon (NM_001111322, exon 17 of 20)	-3773	NR_106956	102466222		NR_106956	ENSG00000276908	MIR7106	hsa-mir-7106	microRNA 7106	ncRNA
215714	chr8	1536971	1537130	+	0	NA	intron (NM_001346810, intron 4 of 14)	intron (NM_001346810, intron 4 of 14)	84614	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
30969	chr10	87867571	87867930	+	0	NA	intron (NM_001304717, intron 2 of 9)	intron (NM_001304717, intron 2 of 9)	4125	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
164843	chr3	71035001	71035400	+	0	NA	intron (NM_001244810, intron 11 of 20)	MER5A1|DNA|hAT-Charlie	29724	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
212923	chr7	130917151	130917250	+	0	NA	intron (NR_109780, intron 3 of 3)	AluJo|SINE|Alu	3736	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
17850	chr1	159920421	159920680	+	0	NA	intron (NM_003564, intron 1 of 4)	intron (NM_003564, intron 1 of 4)	3184	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
181107	chr5	36992871	36993250	+	0	NA	intron (NM_133433, intron 10 of 46)	intron (NM_133433, intron 10 of 46)	116291	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
19713	chr1	181094771	181094930	+	0	NA	Intergenic	Intergenic	6150	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
105552	chr17	83203321	83203830	+	0	NA	Intergenic	Intergenic	-23322	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
81136	chr16	4398071	4398230	+	0	NA	intron (NM_001351729, intron 6 of 27)	AluJr|SINE|Alu	17747	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
94401	chr17	28977571	28978000	+	0	NA	intron (NM_178860, intron 3 of 16)	intron (NM_178860, intron 3 of 16)	-26267	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
94895	chr17	31551771	31552130	+	0	NA	Intergenic	AluSz|SINE|Alu	-8046	NR_029710	406968		NR_029710	ENSG00000207614	MIR193A	MIRN193|MIRN193A|mir-193a	microRNA 193a	ncRNA
3468	chr1	15950851	15952000	+	0	NA	intron (NM_001324138, intron 2 of 14)	intron (NM_001324138, intron 2 of 14)	24676	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
99464	chr17	50150701	50153130	+	0	NA	Intergenic	Intergenic	-1238	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
82532	chr16	18345971	18346130	+	0	NA	intron (NR_146336, intron 12 of 34).2	intron (NR_146336, intron 12 of 34).2	-1971	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
27271	chr10	30028971	30029130	+	0	NA	exon (NM_001350021, exon 4 of 5)	exon (NM_001350021, exon 4 of 5)	30536	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
205261	chr7	8133971	8134900	+	0	NA	intron (NR_146926, intron 12 of 13)	intron (NR_146926, intron 12 of 13)	127732	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
5185	chr1	24948171	24948730	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	16560	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
128274	chr2	54586351	54586650	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	28106	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
160229	chr3	23952871	23953550	+	0	NA	intron (NM_001145425, intron 1 of 7)	AluSx|SINE|Alu	-6648	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
170743	chr3	188322871	188323630	+	0	NA	intron (NR_164692, intron 2 of 9)	intron (NR_164692, intron 2 of 9)	110354	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
131622	chr2	96960051	96960800	+	0	NA	exon (NM_001122646, exon 6 of 17)	exon (NM_001122646, exon 6 of 17)	26155	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
224892	chr9	32427171	32427330	+	0	NA	intron (NM_001362840, intron 12 of 21)	intron (NM_001362840, intron 12 of 21)	42607	NM_001362840	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
95016	chr17	32397371	32397730	+	0	NA	Intergenic	AluJb|SINE|Alu	-46960	NM_002815	5717		NM_002815	ENSG00000108671	PSMD11	Rpn6|S9|p44.5	proteasome 26S subunit, non-ATPase 11	protein-coding
207433	chr7	44534501	44534880	+	0	NA	intron (NM_001101648, intron 5 of 18)	intron (NM_001101648, intron 5 of 18)	6640	NM_001101648	29881		NM_013389	ENSG00000015520	NPC1L1	LDLCQ7|NPC11L1|SLC65A2	NPC1 like intracellular cholesterol transporter 1	protein-coding
184336	chr5	96952321	96952580	+	0	NA	intron (NM_005575, intron 1 of 17)	intron (NM_005575, intron 1 of 17)	-5983	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
195102	chr6	35606151	35607250	+	0	NA	intron (NM_001145775, intron 6 of 11)	L1PA17|LINE|L1	58089	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
211958	chr7	112493321	112493580	+	0	NA	Intergenic	Intergenic	12459	NM_182597	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
215613	chr7	159192071	159192500	+	0	NA	Intergenic	Intergenic	-47328	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
21185	chr1	203801821	203802180	+	0	NA	TTS (NM_001174108)	TTS (NM_001174108)	4477	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
34069	chr10	124940451	124940550	+	0	NA	Intergenic	Intergenic	-1623	NM_017580	54764		NM_017580	ENSG00000019995	ZRANB1	TRABID	zinc finger RANBP2-type containing 1	protein-coding
103240	chr17	77507221	77507480	+	0	NA	Intergenic	Intergenic	-19651	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
228077	chr9	96382321	96382630	+	0	NA	intron (NR_104627, intron 1 of 12)	(AC)n|Simple_repeat|Simple_repeat	1235	NR_104627	11046		NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	solute carrier family 35 member D2	protein-coding
153444	chr22	25086121	25086550	+	0	NA	intron (NM_001145206, intron 4 of 10)	L2a|LINE|L2	26357	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
161174	chr3	39111151	39111250	+	0	NA	intron (NM_001105513, intron 4 of 27)	intron (NM_001105513, intron 4 of 27)	-2837	NM_031899	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
139734	chr2	229831551	229831880	+	0	NA	TTS (NM_001348334)	TTS (NM_001348334)	89964	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
142565	chr20	5266401	5266600	+	0	NA	Intergenic	AluSz6|SINE|Alu	50454	NM_144773	128674		NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
76415	chr15	74776521	74778130	+	0	NA	Intergenic	Intergenic	-4755	NM_001127190	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
208722	chr7	73358151	73358450	+	0	NA	3' UTR (NM_001135211, exon 9 of 9)	3' UTR (NM_001135211, exon 9 of 9)	30139	NM_001135211	8468		NM_003602	ENSG00000077800	FKBP6	FKBP36|SPGF77	FKBP prolyl isomerase family member 6 (inactive)	protein-coding
222721	chr8	141335071	141335230	+	0	NA	Intergenic	Intergenic	-5399	NR_024441	731779		NR_024441	ENSG00000253595	LINC01300	-	long intergenic non-protein coding RNA 1300	ncRNA
214088	chr7	143619201	143619400	+	0	NA	intron (NM_001363538, intron 8 of 11)	AluSx|SINE|Alu	-1674	NM_001365429	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
42451	chr11	69324901	69325100	+	0	NA	Intergenic	(TGGTGG)n|Simple_repeat|Simple_repeat	30845	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
56667	chr12	119992121	119992500	+	0	NA	intron (NR_147894, intron 1 of 8)	intron (NR_147894, intron 1 of 8)	2466	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
1282	chr1	2324001	2324300	+	0	NA	intron (NM_024848, intron 12 of 13)	intron (NM_024848, intron 12 of 13)	28511	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
37376	chr11	16788371	16788830	+	0	NA	3' UTR (NM_001329631, exon 23 of 23)	3' UTR (NM_001329631, exon 23 of 23)	49953	NM_014267	10944		NM_014267	ENSG00000110696	C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
211608	chr7	105876271	105877680	+	0	NA	promoter-TSS (NM_152749)	promoter-TSS (NM_152749)	-376	NM_001385596	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
170644	chr3	187062501	187062700	+	0	NA	intron (NM_173216, intron 5 of 7)	(CA)n|Simple_repeat|Simple_repeat	23882	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
166755	chr3	122092451	122092780	+	0	NA	intron (NM_001206924, intron 2 of 5)	MIR3|SINE|MIR	14766	NM_176892	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
218405	chr8	47358321	47358580	+	0	NA	intron (NR_104581, intron 5 of 16)	intron (NR_104581, intron 5 of 16)	97512	NM_001080394	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
75580	chr15	67080701	67081530	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	15513	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
25012	chr10	3324601	3325000	+	0	NA	intron (NR_131187, intron 1 of 1)	intron (NR_131187, intron 1 of 1)	6105	NR_131187	105376360		NR_131187		LOC105376360	-	uncharacterized LOC105376360	ncRNA
32380	chr10	102410271	102411930	+	0	NA	exon (NM_002779, exon 9 of 17)	exon (NM_002779, exon 9 of 17)	-1823	NR_073110	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
180499	chr5	14256351	14256650	+	0	NA	intron (NR_134469, intron 1 of 56)	L1ME3E|LINE|L1	113158	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
36225	chr11	3614401	3614830	+	0	NA	non-coding (NR_164660, exon 4 of 4)	non-coding (NR_164660, exon 4 of 4)	4291	NR_164660	115995503		NR_164660	ENSG00000293282	XNDC1CP	-	XRCC1 N-terminal domain containing 1, C-terminal like pseudogene	pseudo
167145	chr3	127831871	127832050	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-8710	NM_001003794	11343		NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
157495	chr22	45324221	45324980	+	0	NA	intron (NM_001349915, intron 3 of 7)	intron (NM_001349915, intron 3 of 7)	6157	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
117415	chr19	19630571	19630730	+	0	NA	intron (NM_001288998, intron 18 of 19)	L2|LINE|L2	-2430	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
42110	chr11	67600321	67600580	+	0	NA	Intergenic	Intergenic	6256	NR_130935	100505621		NM_173578	ENSG00000184224	NDUFV1-DT	C11orf72	NDUFV1 divergent transcript	ncRNA
11607	chr1	91698771	91699130	+	0	NA	intron (NR_036634, intron 15 of 17)	L2c|LINE|L2	187201	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
147765	chr20	62498621	62499080	+	0	NA	Intergenic	Intergenic	-22855	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
143051	chr20	21395651	21396330	+	0	NA	exon (NM_033176, exon 2 of 2)	exon (NM_033176, exon 2 of 2)	1536	NM_033176	644524		NM_033176	ENSG00000125816	NKX2-4	NKX2.4|NKX2D	NK2 homeobox 4	protein-coding
142	chr1	520101	520680	+	0	NA	Intergenic	L1MC5a|LINE|L1	-24945	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
179984	chr5	879571	879930	+	0	NA	intron (NM_001375861, intron 11 of 16)	intron (NM_001375861, intron 11 of 16)	12772	NR_134296								
216810	chr8	22561651	22562550	+	0	NA	intron (NM_005775, intron 7 of 20)	intron (NM_005775, intron 7 of 20)	-3629	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
73929	chr15	50908101	50909780	+	0	NA	intron (NM_001252127, intron 1 of 20)	CpG	257	NM_001252127	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
161620	chr3	43225471	43225660	+	0	NA	Intergenic	L1MA9|LINE|L1	-60947	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
93041	chr17	17306671	17306830	+	0	NA	intron (NM_020201, intron 2 of 4)	intron (NM_020201, intron 2 of 4)	3377	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
89300	chr16	88712171	88712330	+	0	NA	exon (NM_001318507, exon 6 of 15)	exon (NM_001318507, exon 6 of 15)	4087	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
155318	chr22	38208471	38209800	+	0	NA	intron (NM_001161573, intron 1 of 2)	AluY|SINE|Alu	6115	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
68735	chr14	90969421	90969680	+	0	NA	intron (NM_001322238, intron 1 of 14)	intron (NM_001322238, intron 1 of 14)	90574	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
77907	chr15	89205071	89205630	+	0	NA	Intergenic	AluJr|SINE|Alu	16229	NM_000326	6017		NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
115398	chr19	15279471	15280680	+	0	NA	intron (NM_001379291, intron 1 of 19)	MIR|SINE|MIR	376	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
106036	chr18	8703071	8703230	+	0	NA	intron (NR_120598, intron 1 of 1)	intron (NR_120598, intron 1 of 1)	-2406	NM_001378205	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
76632	chr15	75577571	75577980	+	0	NA	intron (NM_002833, intron 1 of 12)	(T)n|Simple_repeat|Simple_repeat	1540	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
184491	chr5	100855321	100855650	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-38920	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
26559	chr10	21660401	21660800	+	0	NA	intron (NR_136736, intron 10 of 25)	AluSz|SINE|Alu	126368	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
88352	chr16	84559351	84559650	+	0	NA	Intergenic	Intergenic	-54841	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
184760	chr5	109921551	109922850	+	0	NA	Intergenic	Intergenic	39018	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
100668	chr17	63744351	63744830	+	0	NA	TTS (NM_020198)	TTS (NM_020198)	-2604	NM_001165970	92335		NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk	STE20 related adaptor alpha	protein-coding
62900	chr13	110839151	110839250	+	0	NA	Intergenic	(TCTCC)n|Simple_repeat|Simple_repeat	25495	NR_158538	105370362		NR_158538		LOC105370362	-	uncharacterized LOC105370362	ncRNA
117688	chr19	28270151	28270250	+	0	NA	Intergenic	L1PA3|LINE|L1	-336488	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
163194	chr3	50213121	50213580	+	0	NA	intron (NM_006841, intron 1 of 15)	intron (NM_006841, intron 1 of 15)	8079	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
191729	chr6	13705621	13706350	+	0	NA	intron (NM_005493, intron 1 of 13)	intron (NM_005493, intron 1 of 13)	5850	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
153050	chr22	23277571	23277930	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	14983	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
151303	chr21	45540521	45540780	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	1196	NM_001352512	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
227521	chr9	91416271	91416430	+	0	NA	intron (NM_001290000, intron 1 of 1)	intron (NM_001290000, intron 1 of 1)	7482	NM_005384	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
178320	chr4	145622201	145622400	+	0	NA	intron (NM_001375644, intron 1 of 6)	THE1B|LTR|ERVL-MaLR	2915	NM_172250	166785		NM_172250	ENSG00000151611	MMAA	cblA	metabolism of cobalamin associated A	protein-coding
119785	chr19	41316351	41318030	+	0	NA	intron (NM_001346100, intron 2 of 4)	L1M5|LINE|L1	6713	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
182982	chr5	71782601	71783030	+	0	NA	Intergenic	Intergenic	63540	NM_004291	9607		NM_004291	ENSG00000164326	CARTPT	CART	CART prepropeptide	protein-coding
28024	chr10	43208151	43208450	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	21439	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
203457	chr7	420771	421450	+	0	NA	Intergenic	Intergenic	-4352	NR_165239	116435278		NR_165237	ENSG00000286710	LOC116435278	-	uncharacterized LOC116435278	ncRNA
133459	chr2	119756901	119757300	+	0	NA	Intergenic	Intergenic	-2822	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
182213	chr5	56844071	56844430	+	0	NA	intron (NM_005921, intron 1 of 19)	AluY|SINE|Alu	28701	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
17418	chr1	156650121	156650900	+	0	NA	intron (NM_198427, intron 6 of 7)	intron (NM_198427, intron 6 of 7)	8393	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
65313	chr14	50094351	50094800	+	0	NA	intron (NR_131171, intron 1 of 8)	AluJr|SINE|Alu	10468	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
164221	chr3	56923601	56924830	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	-7779	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
83480	chr16	27398471	27398630	+	0	NA	Intergenic	Intergenic	-3624	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
198627	chr6	107782771	107783530	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	41163	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
229936	chr9	126643101	126643530	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	29387	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
228226	chr9	97906231	97907830	+	0	NA	intron (NM_001371657, intron 4 of 5)	intron (NM_001371657, intron 4 of 5)	15151	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
46820	chr11	130439001	130439400	+	0	NA	Intergenic	Intergenic	-9774	NM_139055	170689		NM_139055	ENSG00000166106	ADAMTS15	DA12	ADAM metallopeptidase with thrombospondin type 1 motif 15	protein-coding
149668	chr21	33580121	33580980	+	0	NA	intron (NM_017613, intron 8 of 9)	AluJb|SINE|Alu	8134	NM_017613	29980		NM_017613	ENSG00000159147	DONSON	B17|C21orf60|MIMIS|MISSLA	DNA replication fork stabilization factor DONSON	protein-coding
176969	chr4	104491021	104491750	+	0	NA	exon (NM_025212, exon 2 of 3)	exon (NM_025212, exon 2 of 3)	420	NR_125926	101929468		NR_125926	ENSG00000245384	CXXC4-AS1	-	CXXC4 antisense RNA 1	ncRNA
27751	chr10	35197671	35197830	+	0	NA	intron (NM_001352446, intron 1 of 2)	AluY|SINE|Alu	1848	NM_182724	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
105635	chr18	843151	843450	+	0	NA	Intergenic	AluSq|SINE|Alu	-31058	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
184517	chr5	100908101	100908300	+	0	NA	Intergenic	L1MC1|LINE|L1	-4918	NM_175052	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
131400	chr2	96270471	96270630	+	0	NA	intron (NM_004804, intron 6 of 6)	AluSz|SINE|Alu	4325	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
80416	chr16	2618701	2619100	+	0	NA	intron (NR_015441, intron 3 of 3)	intron (NR_015441, intron 3 of 3)	15516	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
141289	chr2	240217601	240218000	+	0	NA	Intergenic	Intergenic	-77142	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
18117	chr1	160711401	160712500	+	0	NA	promoter-TSS (NM_001778)	promoter-TSS (NM_001778)	-99	NM_001256030	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
178577	chr4	151138321	151138580	+	0	NA	intron (NM_001378121, intron 14 of 20)	AluJr4|SINE|Alu	34623	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
77336	chr15	82525701	82526180	+	0	NA	intron (NR_111962, intron 7 of 8)	intron (NR_111962, intron 7 of 8)	6350	NR_111962	642402		NR_111962		GOLGA6L17P	GOLGA6L21P	golgin A6 family like 17, pseudogene	pseudo
219111	chr8	65948151	65949250	+	0	NA	Intergenic	Intergenic	-66278	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
154717	chr22	36436951	36437250	+	0	NA	Intergenic	AluSz|SINE|Alu	44540	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
114797	chr19	13786451	13786750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8843	NM_001367834	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
58089	chr12	124610471	124611830	+	0	NA	Intergenic	Intergenic	-43538	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
70541	chr14	102514701	102515680	+	0	NA	Intergenic	Intergenic	-5414	NM_001348652	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
208895	chr7	73849771	73849930	+	0	NA	Intergenic	AluSz6|SINE|Alu	-7334	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
100940	chr17	64480751	64481330	+	0	NA	intron (NM_007215, intron 6 of 7)	intron (NM_007215, intron 6 of 7)	16014	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
149696	chr21	33952671	33952830	+	0	NA	intron (NR_038883, intron 2 of 2)	L1M5|LINE|L1	21536	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
148219	chr20	63587021	63587280	+	0	NA	TTS (NM_012384)	TTS (NM_012384)	-12911	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
234975	chrX	39427351	39427650	+	0	NA	Intergenic	Intergenic	-35726	NR_110385	101927449		NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
66681	chr14	63944501	63944700	+	0	NA	intron (NM_015180, intron 6 of 114)	AluSx4|SINE|Alu	91596	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
94529	chr17	29571151	29571880	+	0	NA	intron (NM_001346079, intron 3 of 5)	intron (NM_001346079, intron 3 of 5)	2814	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
78960	chr15	101372901	101373300	+	0	NA	intron (NM_001291309, intron 9 of 19)	intron (NM_001291309, intron 9 of 19)	38663	NR_132373	105371027		NR_132373	ENSG00000259764	PCSK6-AS1	-	PCSK6 antisense RNA 1	ncRNA
154560	chr22	36237501	36238800	+	0	NA	intron (NM_145637, intron 2 of 5)	intron (NM_145637, intron 2 of 5)	1377	NM_030882	23780		NM_030882	ENSG00000128335	APOL2	APOL-II|APOL3	apolipoprotein L2	protein-coding
85372	chr16	50273271	50273430	+	0	NA	intron (NM_001114, intron 1 of 25)	MIR|SINE|MIR	6799	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
22800	chr1	224503321	224503800	+	0	NA	intron (NM_001322302, intron 2 of 6)	intron (NM_001322302, intron 2 of 6)	68711	NR_136293	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
224725	chr9	21577571	21577980	+	0	NA	Intergenic	L3|LINE|CR1	-17977	NR_152878	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
13015	chr1	111194671	111195250	+	0	NA	intron (NM_001271833, intron 6 of 11)	L2a|LINE|L2	5686	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
115366	chr19	15230071	15230230	+	0	NA	intron (NM_024794, intron 4 of 6)	MIRc|SINE|MIR	2298	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
116834	chr19	18575971	18576800	+	0	NA	3' UTR (NM_001033930, exon 5 of 5)	3' UTR (NM_001033930, exon 5 of 5)	3545	NM_001321021	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
81909	chr16	11735051	11735350	+	0	NA	intron (NR_136674, intron 2 of 8)	MER20B|DNA|hAT-Charlie	7657	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
50808	chr12	49068201	49068530	+	0	NA	intron (NM_144593, intron 2 of 7)	AluSq|SINE|Alu	1614	NM_144593	121268		NM_144593	ENSG00000167550	RHEBL1	RHEBL1c	RHEB like 1	protein-coding
85901	chr16	57069771	57070580	+	0	NA	intron (NM_001384955, intron 36 of 47)	MIRc|SINE|MIR	-22408	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
149940	chr21	36319051	36319150	+	0	NA	Intergenic	AluJb|SINE|Alu	-1089	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
135131	chr2	157432721	157433030	+	0	NA	intron (NM_004288, intron 3 of 7)	intron (NM_004288, intron 3 of 7)	11214	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
121326	chr19	46775051	46775350	+	0	NA	3' UTR (NM_001145145, exon 7 of 7)	3' UTR (NM_001145145, exon 7 of 7)	9614	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
49236	chr12	19365951	19366250	+	0	NA	exon (NM_019012, exon 24 of 26)	exon (NM_019012, exon 24 of 26)	-73392	NM_153207	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
100696	chr17	63830821	63831080	+	0	NA	intron (NM_001199163, intron 7 of 11)	intron (NM_001199163, intron 7 of 11)	3266	NM_001199163	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
78995	chr15	101958721	101959050	+	0	NA	Intergenic	Intergenic	1711	NR_036267	100422834		NR_036267	ENSG00000284557	MIR1302-10	-	microRNA 1302-10	ncRNA
159941	chr3	17151501	17152750	+	0	NA	Intergenic	Intergenic	218929	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
151009	chr21	44450521	44451230	+	0	NA	TTS (NR_047476)	TTS (NR_047476)	4409	NR_047476	100861510		NR_047476	ENSG00000229356	LRRC3-DT	LRRC3-AS1	LRRC3 divergent transcript	ncRNA
200190	chr6	130913101	130913430	+	0	NA	intron (NM_001350306, intron 4 of 17)	intron (NM_001350306, intron 4 of 17)	57218	NM_001350313	2037		NM_001431	ENSG00000079819	EPB41L2	4.1-G|4.1G	erythrocyte membrane protein band 4.1 like 2	protein-coding
154689	chr22	36379071	36380580	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	8142	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
33153	chr10	112455071	112455330	+	0	NA	intron (NM_001365710, intron 1 of 7)	intron (NM_001365710, intron 1 of 7)	-7597	NM_001351082	64429		NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|DHHC6|ZNF376	zinc finger DHHC-type palmitoyltransferase 6	protein-coding
71763	chr15	21111271	21111680	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	108198	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
5866	chr1	26742551	26742650	+	0	NA	intron (NM_139135, intron 4 of 19)	MER5A1|DNA|hAT-Charlie	-44454	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
22461	chr1	221688571	221688730	+	0	NA	Intergenic	Intergenic	48250	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
147839	chr20	62779071	62779730	+	0	NA	Intergenic	Intergenic	-2544	NR_046225	100652730		NR_046224	ENSG00000228705	LINC00659	-	long intergenic non-protein coding RNA 659	ncRNA
50101	chr12	44854401	44854600	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	21161	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
238594	chrX	153905901	153906800	+	0	NA	non-coding (NR_027419, exon 3 of 4)	non-coding (NR_027419, exon 3 of 4)	1636	NM_001146151	554		NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|NDI1|V2R	arginine vasopressin receptor 2	protein-coding
223394	chr8	143919321	143919580	+	0	NA	exon (NM_000445, exon 33 of 33)	exon (NM_000445, exon 33 of 33)	20147	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
144561	chr20	35743901	35744950	+	0	NA	Intergenic	Intergenic	-2089	NR_136587	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
101593	chr17	68089901	68090130	+	0	NA	Intergenic	L3b|LINE|CR1	-11540	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
163929	chr3	52691671	52691830	+	0	NA	promoter-TSS (NR_003057)	promoter-TSS (NR_003057)	372	NR_145744	109616991		NR_145744	ENSG00000222345	SNORD19C	-	small nucleolar RNA, C/D box 19C	snoRNA
158839	chr3	9796951	9797450	+	0	NA	intron (NM_001198780, intron 1 of 5)	L2c|LINE|L2	4118	NM_001198780	10093		NM_005718	ENSG00000241553	ARPC4	ARC20|DEVLO|P20-ARC	actin related protein 2/3 complex subunit 4	protein-coding
26711	chr10	22660371	22661650	+	0	NA	intron (NM_005028, intron 1 of 9)	L1MC1|LINE|L1	53098	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
188565	chr5	157046171	157046330	+	0	NA	intron (NM_012206, intron 4 of 7)	intron (NM_012206, intron 4 of 7)	11991	NM_012206	26762		NM_012206	ENSG00000113249	HAVCR1	CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
4612	chr1	22097051	22097630	+	0	NA	3' UTR (NM_001039802, exon 7 of 7)	3' UTR (NM_001039802, exon 7 of 7)	44631	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
112944	chr19	7718671	7719130	+	0	NA	Intergenic	Intergenic	13271	NM_198492	339390		NM_198492	ENSG00000182566	CLEC4G	DTTR431|LP2698|LSECtin|UNQ431	C-type lectin domain family 4 member G	protein-coding
49723	chr12	31321271	31322250	+	0	NA	intron (NM_021238, intron 1 of 6)	intron (NM_021238, intron 1 of 6)	-2556	NR_026806	79857		NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
214388	chr7	149778221	149779200	+	0	NA	intron (NR_163594, intron 6 of 102)	intron (NR_163594, intron 6 of 102)	2668	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
57962	chr12	123908871	123909030	+	0	NA	intron (NM_207437, intron 56 of 77)	MER5B|DNA|hAT-Charlie	63109	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
43395	chr11	77101221	77101480	+	0	NA	intron (NM_004055, intron 3 of 12)	intron (NM_004055, intron 3 of 12)	-1490	NM_006189	4975		NM_006189	ENSG00000254550	OMP	-	olfactory marker protein	protein-coding
236519	chrX	72069221	72069900	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	25151	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
16458	chr1	154589201	154589400	+	0	NA	intron (NM_001111, intron 9 of 14)	intron (NM_001111, intron 9 of 14)	16953	NM_001193495	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
143857	chr20	32535911	32537900	+	0	NA	intron (NM_001256798, intron 1 of 10)	CpG	26946	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
13796	chr1	117387371	117387750	+	0	NA	intron (NM_006699, intron 1 of 12)	intron (NM_006699, intron 1 of 12)	20111	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
106517	chr18	21076351	21076650	+	0	NA	intron (NM_005406, intron 1 of 32)	AluSx1|SINE|Alu	35313	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
17594	chr1	156865971	156867200	+	0	NA	intron (NM_002529, intron 3 of 16)	intron (NM_002529, intron 3 of 16)	5706	NM_002529	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
120997	chr19	45767871	45768800	+	0	NA	exon (NM_175875, exon 1 of 3)	exon (NM_175875, exon 1 of 3)	539	NR_147193	109729182		NR_147193	ENSG00000267395	DM1-AS	-	DM1 locus antisense RNA	ncRNA
175848	chr4	78864271	78864680	+	0	NA	intron (NM_017593, intron 9 of 13)	intron (NM_017593, intron 9 of 13)	74963	NR_146464	152559		NM_177453	ENSG00000163291	PAQR3	RKTG	progestin and adipoQ receptor family member 3	protein-coding
137868	chr2	200829651	200830400	+	0	NA	Intergenic	U6|snRNA|snRNA	17639	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
141666	chr2	241775621	241775880	+	0	NA	Intergenic	Intergenic	-1072	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
228377	chr9	99110471	99111100	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	5672	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233577	chrX	303821	304480	+	0	NA	TTS (NM_012227)	TTS (NM_012227)	14669	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
22183	chr1	212311301	212311500	+	0	NA	intron (NM_001199756, intron 1 of 12)	AluYm1|SINE|Alu	9542	NM_001199756	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
103579	chr17	78697521	78698380	+	0	NA	intron (NM_001292019, intron 9 of 12)	intron (NM_001292019, intron 9 of 12)	19082	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
55419	chr12	104490051	104490450	+	0	NA	intron (NM_018413, intron 1 of 2)	LTR82B|LTR|ERVL	33302	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
51411	chr12	52005451	52007200	+	0	NA	promoter-TSS (NM_181711)	promoter-TSS (NM_181711)	-621	NM_181711	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
221938	chr8	129886701	129887450	+	0	NA	intron (NM_001353311, intron 4 of 13)	MSTA-int|LTR|ERVL-MaLR	52736	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
108642	chr18	76496121	76496680	+	0	NA	non-coding (NR_164145, exon 2 of 2)	non-coding (NR_164145, exon 2 of 2)	1061	NR_164145	400658		NM_207460	ENSG00000275763	ZNF516-DT	C18orf65	ZNF516 divergent transcript	ncRNA
139701	chr2	227479851	227481030	+	0	NA	intron (NM_001135189, intron 1 of 11)	AluSx|SINE|Alu	8284	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
122641	chr19	49836821	49837080	+	0	NA	TTS (NM_030973)	TTS (NM_030973)	4932	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
47646	chr12	6279951	6280250	+	0	NA	Intergenic	MIRb|SINE|MIR	-30232	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
43360	chr11	76798221	76798480	+	0	NA	TTS (NM_001318477)	TTS (NM_001318477)	6598	NM_001318477	25987		NM_015516	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
19476	chr1	174988971	174989430	+	0	NA	intron (NM_001243764, intron 6 of 6)	intron (NM_001243764, intron 6 of 6)	-10235	NM_001007214	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
140563	chr2	233299121	233299380	+	0	NA	Intergenic	(GCAA)n|Simple_repeat|Simple_repeat	-8566	NM_000541	6295		NM_000541	ENSG00000130561	SAG	RP47|RP96|S-AG	S-antigen visual arrestin	protein-coding
22728	chr1	224204421	224205130	+	0	NA	Intergenic	Intergenic	8504	NR_110669	101927143		NR_110669	ENSG00000232628	LOC101927143	-	uncharacterized LOC101927143	ncRNA
37624	chr11	20362401	20362780	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-1095	NM_006410	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
117299	chr19	19492171	19492550	+	0	NA	exon (NM_001384511, exon 4 of 13)	exon (NM_001384511, exon 4 of 13)	23188	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
157219	chr22	43190951	43191400	+	0	NA	Intergenic	AluJb|SINE|Alu	-4041	NM_015140	23170		NM_015140	ENSG00000100304	TTLL12	dJ526I14.2	tubulin tyrosine ligase like 12	protein-coding
106491	chr18	14612371	14613250	+	0	NA	Intergenic	Intergenic	-69210	NR_134878	388468		NM_001137671	ENSG00000183206	POTEC	A26B2|CT104.6|POTE-18|POTE18	POTE ankyrin domain family member C	protein-coding
184036	chr5	91370371	91370530	+	0	NA	non-coding (NR_138072, exon 8 of 8)	non-coding (NR_138072, exon 8 of 8)	9647	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
154266	chr22	31626651	31626930	+	0	NA	intron (NM_001326417, intron 3 of 9)	intron (NM_001326417, intron 3 of 9)	4034	NM_014338	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
188472	chr5	154756231	154757610	+	0	NA	promoter-TSS (NM_001367719)	promoter-TSS (NM_001367719)	-234	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
82502	chr16	17414521	17414780	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	56310	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
172745	chr4	2839771	2839930	+	0	NA	3' UTR (NM_003023, exon 13 of 13)	3' UTR (NM_003023, exon 13 of 13)	-3994	NM_001354759	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
27519	chr10	32303471	32303630	+	0	NA	intron (NR_168511, intron 2 of 13)	L1MD2|LINE|L1	43608	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
220147	chr8	94943421	94943950	+	0	NA	intron (NM_033285, intron 1 of 3)	intron (NM_033285, intron 1 of 3)	5693	NM_001135733	94241		NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
50720	chr12	48967021	48967280	+	0	NA	intron (NM_003394, intron 4 of 4)	AluSx|SINE|Alu	4585	NM_003394	7480		NM_003394	ENSG00000169884	WNT10B	SHFM6|STHAG8|WNT-12	Wnt family member 10B	protein-coding
135	chr1	511751	512250	+	0	NA	Intergenic	MER21C|LTR|ERVL	-16555	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
173594	chr4	10461071	10462050	+	0	NA	Intergenic	CpG	-4134	NM_001375817	85460		NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
49881	chr12	38921071	38921250	+	0	NA	Intergenic	(TAGA)n|Simple_repeat|Simple_repeat	-15569	NM_153634	144402		NM_153634	ENSG00000139117	CPNE8	-	copine 8	protein-coding
81106	chr16	4368571	4369350	+	0	NA	intron (NM_001351729, intron 9 of 27)	intron (NM_001351729, intron 9 of 27)	-2888	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
94431	chr17	29143701	29144380	+	0	NA	intron (NM_001346765, intron 2 of 42)	Tigger15a|DNA|TcMar-Tigger	-3651	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
98260	chr17	46184301	46185050	+	0	NA	intron (NM_001193465, intron 2 of 15)	L2b|LINE|L2	8107	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
165470	chr3	98817501	98817850	+	0	NA	intron (NM_080927, intron 9 of 15)	intron (NM_080927, intron 9 of 15)	54368	NM_001323367	10402		NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
34354	chr10	132205651	132206150	+	0	NA	TTS (NM_006426)	TTS (NM_006426)	18952	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
4281	chr1	19715321	19716350	+	0	NA	intron (NM_001349112, intron 12 of 14)	intron (NM_001349112, intron 12 of 14)	50960	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
91583	chr17	5222901	5223100	+	0	NA	intron (NM_001271842, intron 2 of 4)	intron (NM_001271842, intron 2 of 4)	11860	NM_001319190	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
231742	chr9	132082271	132082430	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-2483	NM_004269	9442		NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|NEDSCAC|TRAP37	mediator complex subunit 27	protein-coding
212194	chr7	117110421	117111130	+	0	NA	intron (NM_001369606, intron 3 of 16)	intron (NM_001369606, intron 3 of 16)	-19994	NR_109980	93654		NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
69571	chr14	96987151	96987450	+	0	NA	Intergenic	Intergenic	43721	NR_104113	145249		NR_104113		LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
49188	chr12	15546171	15547080	+	0	NA	promoter-TSS (NM_030669)	promoter-TSS (NM_030669)	14	NM_030668	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
210925	chr7	101232021	101233180	+	0	NA	intron (NM_014343, intron 4 of 4)	CpG	5202	NM_014343	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
109563	chr19	887651	887750	+	0	NA	intron (NM_005481, intron 4 of 15)	L1MB7|LINE|L1	5487	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
98295	chr17	46231821	46232080	+	0	NA	Intergenic	L2c|LINE|L2	-6583	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
146294	chr20	49144151	49144450	+	0	NA	intron (NM_017453, intron 5 of 13)	Looper|DNA|PiggyBac	44034	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
106760	chr18	23584171	23584330	+	0	NA	intron (NM_000271, intron 1 of 24)	intron (NM_000271, intron 1 of 24)	2256	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
154298	chr22	31903271	31903630	+	0	NA	intron (NR_146296, intron 41 of 42)	intron (NR_146296, intron 41 of 42)	35004	NM_001302819	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
114218	chr19	11448671	11449330	+	0	NA	intron (NM_001001329, intron 15 of 17)	intron (NM_001001329, intron 15 of 17)	-13218	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
97207	chr17	42744221	42745750	+	0	NA	promoter-TSS (NM_001991)	promoter-TSS (NM_001991)	55	NM_001321079	2145		NM_001991	ENSG00000108799	EZH1	KMT6B	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding
59435	chr13	25846851	25847800	+	0	NA	intron (NM_016529, intron 30 of 36)	intron (NM_016529, intron 30 of 36)	204691	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
24477	chr1	244077301	244077700	+	0	NA	Intergenic	Intergenic	24295	NM_006352	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
160347	chr3	27723501	27724700	+	0	NA	Intergenic	CpG	-1385	NM_001278183	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
73126	chr15	41287171	41287830	+	0	NA	intron (NR_152821, intron 2 of 4)	L1MA9|LINE|L1	2158	NR_152821	729082		NR_026757	ENSG00000247556	OIP5-AS1	cyrano|linc-OIP5	OIP5 antisense RNA 1	ncRNA
142131	chr20	2729221	2729950	+	0	NA	intron (NR_138537, intron 7 of 17)	intron (NR_138537, intron 7 of 17)	36707	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
93229	chr17	17845101	17846180	+	0	NA	3' UTR (NM_001288787, exon 14 of 14)	3' UTR (NM_001288787, exon 14 of 14)	-8629	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
170749	chr3	188361821	188362150	+	0	NA	intron (NM_001167671, intron 3 of 11)	L2c|LINE|L2	149089	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
177321	chr4	109705621	109705880	+	0	NA	Intergenic	AluJr|SINE|Alu	-2305	NM_001226	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
129328	chr2	68738801	68739230	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	3638	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
215787	chr8	2162701	2163330	+	0	NA	Intergenic	L1ME3G|LINE|L1	86426	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
160223	chr3	23947271	23947430	+	0	NA	promoter-TSS (NM_001377380)	promoter-TSS (NM_001377380)	-788	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
121277	chr19	46711971	46712330	+	0	NA	intron (NM_001079881, intron 3 of 18)	AluJb|SINE|Alu	2170	NM_001079882	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
69620	chr14	97634651	97635150	+	0	NA	intron (NR_033943, intron 3 of 3)	intron (NR_033943, intron 3 of 3)	51758	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
207439	chr7	44564101	44564300	+	0	NA	Intergenic	Intergenic	10338	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
197558	chr6	79570771	79571000	+	0	NA	Intergenic	Intergenic	-33455	NM_001122769	167691		NM_181714	ENSG00000135338	LCA5	C6orf152	lebercilin LCA5	protein-coding
216231	chr8	12190221	12190550	+	0	NA	intron (NR_003494, intron 2 of 5)	intron (NR_003494, intron 2 of 5)	3744	NR_003494	85002		NM_001083537	ENSG00000186523	FAM86B1	-	family with sequence similarity 86 member B1	protein-coding
191170	chr6	4935521	4935980	+	0	NA	exon (NM_001368127, exon 2 of 6)	exon (NM_001368127, exon 2 of 6)	45710	NM_001143971	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
137437	chr2	196914851	196915750	+	0	NA	intron (NM_024989, intron 3 of 26)	L2|LINE|L2	11407	NM_001321099	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
37977	chr11	34929871	34930030	+	0	NA	intron (NM_003477, intron 1 of 10)	LTR79|LTR|ERVL	-11887	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
209637	chr7	77742671	77743030	+	0	NA	intron (NM_198467, intron 2 of 7)	MER68|LTR|ERVL	-45505	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
139639	chr2	226423451	226423950	+	0	NA	Intergenic	Intergenic	235093	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
125750	chr2	20821471	20822400	+	0	NA	intron (NM_001282719, intron 1 of 5)	intron (NM_001282719, intron 1 of 5)	1166	NM_021925	60526		NM_021925	ENSG00000118961	LDAH	C2orf43|hLDAH	lipid droplet associated hydrolase	protein-coding
2210	chr1	8704851	8705550	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	112440	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
174412	chr4	39443101	39443300	+	0	NA	intron (NM_175737, intron 3 of 4)	L1MC4|LINE|L1	15722	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
232008	chr9	133358251	133358350	+	0	NA	intron (NM_017503, intron 3 of 5)	intron (NM_017503, intron 3 of 5)	1750	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
164849	chr3	71047101	71047500	+	0	NA	intron (NM_001244812, intron 4 of 15)	intron (NM_001244812, intron 4 of 15)	17624	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
223406	chr8	143927301	143927500	+	0	NA	intron (NM_201383, intron 27 of 31)	CpG-27762	12197	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
152130	chr22	19966021	19967030	+	0	NA	intron (NM_007310, intron 3 of 3)	AluJr4|SINE|Alu	2772	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
8002	chr1	38000571	38000730	+	0	NA	intron (NM_004468, intron 1 of 5)	intron (NM_004468, intron 1 of 5)	4864	NM_004468	2275		NM_004468	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
46342	chr11	125569161	125570530	+	0	NA	TTS (NR_132372)	TTS (NR_132372)	368	NM_001290135	9538		NM_004879	ENSG00000149547	EI24	EPG4|PIG8|TP53I8	EI24 autophagy associated transmembrane protein	protein-coding
188104	chr5	150371171	150371530	+	0	NA	intron (NM_000356, intron 6 of 25)	intron (NM_000356, intron 6 of 25)	13653	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
5046	chr1	24536371	24537300	+	0	NA	3' UTR (NM_001251985, exon 2 of 2)	3' UTR (NM_001251985, exon 2 of 2)	19189	NR_109781	100506985		NR_109781		NCMAP-DT	-	NCMAP divergent transcript	ncRNA
212929	chr7	130923721	130924300	+	0	NA	Intergenic	Intergenic	10546	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
65205	chr14	49691201	49691830	+	0	NA	Intergenic	Intergenic	-1605	NM_172193	122773		NM_172193	ENSG00000197776	KLHDC1	MST025	kelch domain containing 1	protein-coding
34633	chr10	133311801	133312200	+	0	NA	non-coding (NR_046330, exon 1 of 18)	non-coding (NR_046330, exon 1 of 18)	337	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
180493	chr5	14208221	14208700	+	0	NA	intron (NR_134469, intron 1 of 56)	L1ME1|LINE|L1	65118	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
227045	chr9	83969801	83970000	+	0	NA	promoter-TSS (NR_029605)	promoter-TSS (NR_029605)	-43	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
88616	chr16	85609851	85611200	+	0	NA	promoter-TSS (NM_001134473)	promoter-TSS (NM_001134473)	-884	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
12731	chr1	109548021	109549380	+	0	NA	promoter-TSS (NM_006496)	promoter-TSS (NM_006496)	85	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
116307	chr19	17784001	17784750	+	0	NA	intron (NM_001384391, intron 25 of 27)	intron (NM_001384391, intron 25 of 27)	-10763	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
46708	chr11	128837551	128838250	+	0	NA	TTS (NM_000220)	TTS (NM_000220)	4569	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
215619	chr7	159206901	159207380	+	0	NA	Intergenic	Intergenic	-62183	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
158765	chr3	9397301	9398400	+	0	NA	promoter-TSS (NR_027007)	promoter-TSS (NR_027007)	235	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
141698	chr2	241821221	241822030	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	10229	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
137896	chr2	200857751	200858250	+	0	NA	exon (NM_004071, exon 6 of 13)	exon (NM_004071, exon 6 of 13)	6561	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
112022	chr19	5048051	5048780	+	0	NA	intron (NM_001370093, intron 6 of 11)	CpG	79302	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
9150	chr1	45519721	45520000	+	0	NA	intron (NM_001202431, intron 1 of 5)	AluSp|SINE|Alu	2024	NM_181697	5052		NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
233320	chr9	137428771	137428930	+	0	NA	intron (NM_001256068, intron 3 of 11)	intron (NM_001256068, intron 3 of 11)	5455	NM_001256068	10811		NM_006647	ENSG00000188747	NOXA1	NY-CO-31|SDCCAG31|p51NOX	NADPH oxidase activator 1	protein-coding
228520	chr9	100413151	100413650	+	0	NA	Intergenic	Intergenic	-13743	NM_080655	91283		NM_080655	ENSG00000066697	MSANTD3	C9orf30|L8	Myb/SANT DNA binding domain containing 3	protein-coding
148495	chr20	64069151	64069250	+	0	NA	intron (NM_198723, intron 5 of 10)	intron (NM_198723, intron 5 of 10)	6002	NM_003195	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
168177	chr3	140773151	140773450	+	0	NA	Intergenic	(AAAC)n|Simple_repeat|Simple_repeat	95236	NM_152616	287015		NM_152616	ENSG00000155890	TRIM42	PPP1R40|T4A1	tripartite motif containing 42	protein-coding
48329	chr12	9040371	9040830	+	0	NA	Intergenic	Kanga1a|DNA|TcMar-Tc2	24470	NR_034140	253128		NM_182550	ENSG00000214851	LINC00612	C12orf33	long intergenic non-protein coding RNA 612	ncRNA
8492	chr1	40825251	40826300	+	0	NA	intron (NM_004700, intron 9 of 13)	intron (NM_004700, intron 9 of 13)	36588	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
107108	chr18	35059801	35060000	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	18487	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
80253	chr16	2216671	2216830	+	0	NA	Intergenic	L1ME3|LINE|L1	-1910	NM_001042371	283871		NM_001042371	ENSG00000184207	PGP	AUM|G3PP|PGPase	phosphoglycolate phosphatase	protein-coding
221074	chr8	116881821	116882080	+	0	NA	Intergenic	MIRb|SINE|MIR	-7150	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
59957	chr13	31846321	31847580	+	0	NA	intron (NR_027062, intron 1 of 3)	CpG	167	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
183915	chr5	87392671	87393000	+	0	NA	TTS (NM_002890)	TTS (NM_002890)	20069	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
98486	chr17	47222101	47222480	+	0	NA	intron (NM_001002841, intron 5 of 7)	intron (NM_001002841, intron 5 of 7)	12942	NM_002476	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
48127	chr12	7897351	7898230	+	0	NA	Intergenic	AluY|SINE|Alu	-6594	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
81288	chr16	4673751	4674450	+	0	NA	intron (NR_102267, intron 10 of 14)	AluSz6|SINE|Alu	2782	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
72765	chr15	39716401	39716800	+	0	NA	intron (NM_001324338, intron 9 of 11)	L1ME4a|LINE|L1	66241	NM_001324338	161835		NM_152597	ENSG00000150667	FSIP1	HSD10	fibrous sheath interacting protein 1	protein-coding
179917	chr5	701101	701300	+	0	NA	Intergenic	L1MEc|LINE|L1	-7848	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
223094	chr8	143425471	143426030	+	0	NA	Intergenic	Intergenic	4982	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
50131	chr12	45611201	45611400	+	0	NA	Intergenic	(GGGGCT)n|Simple_repeat|Simple_repeat	116621	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
124645	chr2	2057101	2057700	+	0	NA	intron (NM_001329845, intron 3 of 24)	intron (NM_001329845, intron 3 of 24)	-261832	NR_024468	730811		NR_024468	ENSG00000225619	MYT1L-AS1	-	MYT1L antisense RNA 1	ncRNA
208118	chr7	58699471	58699630	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1249373	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
73058	chr15	40900171	40901400	+	0	NA	exon (NM_020857, exon 4 of 5)	exon (NM_020857, exon 4 of 5)	-6024	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
30166	chr10	74189851	74190750	+	0	NA	intron (NM_001369124, intron 1 of 9)	L1M4|LINE|L1	13537	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
191723	chr6	13689971	13690330	+	0	NA	intron (NM_005493, intron 2 of 13)	intron (NM_005493, intron 2 of 13)	21685	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
143678	chr20	32040371	32040530	+	0	NA	Intergenic	Intergenic	-11792	NM_001172129	3055		NM_002110	ENSG00000101336	HCK	AIPCV|JTK9|p59Hck|p61Hck	HCK proto-oncogene, Src family tyrosine kinase	protein-coding
67797	chr14	73765171	73765330	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-4947	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
151309	chr21	45546271	45546430	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	-3910	NM_001205206	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
80773	chr16	3184201	3184700	+	0	NA	Intergenic	Intergenic	-3754	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
85931	chr16	57130201	57130780	+	0	NA	intron (NM_152727, intron 12 of 15)	intron (NM_152727, intron 12 of 15)	37907	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
50838	chr12	49113851	49114150	+	0	NA	Intergenic	Intergenic	-3100	NM_001300751	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
199732	chr6	125759051	125759400	+	0	NA	exon (NM_012259, exon 5 of 5)	exon (NM_012259, exon 5 of 5)	9593	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
81939	chr16	11792521	11793230	+	0	NA	intron (NM_014153, intron 1 of 22)	intron (NM_014153, intron 1 of 22)	4383	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
49206	chr12	15885351	15885650	+	0	NA	intron (NM_007178, intron 2 of 9)	(T)n|Simple_repeat|Simple_repeat	3113	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
121026	chr19	45800251	45801080	+	0	NA	intron (NM_030785, intron 4 of 5)	intron (NM_030785, intron 4 of 5)	-7820	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
72790	chr15	40035021	40035630	+	0	NA	TTS (NM_003134)	TTS (NM_003134)	3856	NM_003134	6727		NM_003134	ENSG00000140319	SRP14	ALURBP	signal recognition particle 14	protein-coding
115066	chr19	14197621	14197880	+	0	NA	intron (NM_001008701, intron 1 of 23)	L2b|LINE|L2	8419	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
116801	chr19	18530721	18531000	+	0	NA	TTS (NM_001308373)	TTS (NM_001308373)	-8790	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
126854	chr2	31922971	31923130	+	0	NA	intron (NM_001371916, intron 3 of 8)	L1PA15|LINE|L1	87714	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
22830	chr1	225413901	225414380	+	0	NA	intron (NM_194442, intron 7 of 13)	intron (NM_194442, intron 7 of 13)	13898	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
23350	chr1	228145151	228145250	+	0	NA	intron (NM_001159391, intron 1 of 7)	intron (NM_001159391, intron 1 of 7)	504	NM_001159391	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
195855	chr6	41502951	41503680	+	0	NA	intron (NR_120347, intron 2 of 2)	intron (NR_120347, intron 2 of 2)	871	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
60224	chr13	40517371	40517850	+	0	NA	Intergenic	Intergenic	-36604	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
5321	chr1	25236151	25236730	+	0	NA	Intergenic	AluJb|SINE|Alu	-3938	NM_207170	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
213225	chr7	133478671	133478830	+	0	NA	intron (NM_021807, intron 8 of 17)	intron (NM_021807, intron 8 of 17)	187869	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
135104	chr2	157395351	157396400	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-15366	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
201188	chr6	143232951	143233050	+	0	NA	intron (NM_001366352, intron 4 of 5)	intron (NM_001366352, intron 4 of 5)	68218	NM_001366361	51390		NM_016108	ENSG00000146416	AIG1	AIG-1|dJ95L4.1	androgen induced 1	protein-coding
87875	chr16	78098821	78100280	+	0	NA	promoter-TSS (NR_120436)	promoter-TSS (NR_120436)	-104	NR_120435	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
177827	chr4	124322271	124322430	+	0	NA	Intergenic	Intergenic	236084	NR_110838	101927087		NR_110838	ENSG00000261083	LINC02516	-	long intergenic non-protein coding RNA 2516	ncRNA
192758	chr6	26444801	26445250	+	0	NA	intron (NM_001242803, intron 2 of 5)	MER90|LTR|ERV1	4521	NM_001242803	10384		NM_006994	ENSG00000111801	BTN3A3	BTF3|BTN3.3	butyrophilin subfamily 3 member A3	protein-coding
116665	chr19	18387001	18387430	+	0	NA	TTS (NR_036156)	TTS (NR_036156)	653	NR_036156	100422943		NR_036156	ENSG00000264175	MIR3189	mir-3189	microRNA 3189	ncRNA
191624	chr6	12289151	12289600	+	0	NA	promoter-TSS (NM_001955)	promoter-TSS (NM_001955)	-986	NM_001955	1906		NM_001955	ENSG00000078401	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
28482	chr10	49606871	49607280	+	0	NA	Intergenic	Intergenic	-2020	NM_020984	1103		NM_020549	ENSG00000070748	CHAT	CHOACTASE|CMS1A|CMS1A2|CMS6	choline O-acetyltransferase	protein-coding
95795	chr17	38721771	38722330	+	0	NA	exon (NM_005937, exon 17 of 20)	exon (NM_005937, exon 17 of 20)	2359	NR_039879	100616153		NR_039879	ENSG00000273627	MIR4726	-	microRNA 4726	ncRNA
84566	chr16	30611421	30611680	+	0	NA	promoter-TSS (NR_073481)	promoter-TSS (NR_073481)	-775	NR_073481	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
43025	chr11	74003921	74004250	+	0	NA	intron (NM_022803, intron 5 of 5)	intron (NM_022803, intron 5 of 5)	5000	NM_003356	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
103546	chr17	78662621	78662880	+	0	NA	Intergenic	AluSx1|SINE|Alu	-30693	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
176963	chr4	103197701	103199050	+	0	NA	promoter-TSS (NM_001813)	promoter-TSS (NM_001813)	-32	NM_001813	1062		NM_001813	ENSG00000138778	CENPE	CENP-E|KIF10|MCPH13|PPP1R61	centromere protein E	protein-coding
160841	chr3	33071171	33071930	+	0	NA	intron (NM_000404, intron 2 of 15)	intron (NM_000404, intron 2 of 15)	25282	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
195961	chr6	41947401	41947800	+	0	NA	intron (NM_001136017, intron 1 of 4)	L2a|LINE|L2	-5752	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
14642	chr1	145504371	145504530	+	0	NA	Intergenic	Intergenic	-98672	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
55843	chr12	109091321	109091780	+	0	NA	intron (NM_001145374, intron 2 of 3)	AluSz|SINE|Alu	1922	NM_001145374	121642		NM_001001655	ENSG00000189046	ALKBH2	ABH2	alkB homolog 2, alpha-ketoglutarate dependent dioxygenase	protein-coding
95760	chr17	38657271	38657650	+	0	NA	Intergenic	Intergenic	17497	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
193190	chr6	29734071	29734230	+	0	NA	intron (NR_026972, intron 4 of 5).3	intron (NR_026972, intron 4 of 5).3	10716	NM_001098478	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
77306	chr15	82355831	82356480	+	0	NA	intron (NR_004847, intron 1 of 4)	intron (NR_004847, intron 1 of 4)	1019	NR_004847	100134869		NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	UBE2Q2 pseudogene 2	pseudo
123297	chr19	53561721	53562050	+	0	NA	intron (NM_001317116, intron 2 of 4)	AluSx|SINE|Alu	6578	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
146788	chr20	50922071	50923300	+	0	NA	intron (NM_001347511, intron 1 of 4)	AluSx3|SINE|Alu	-8299	NR_110007	101927631		NR_110007	ENSG00000259456	ADNP-AS1	-	ADNP antisense RNA 1	ncRNA
182219	chr5	56851521	56851780	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	36101	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
59612	chr13	27829851	27830300	+	0	NA	intron (NR_047484, intron 3 of 4)	intron (NR_047484, intron 3 of 4)	37592	NM_145657	219409		NM_145657	ENSG00000169840	GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
61174	chr13	49125151	49125450	+	0	NA	intron (NM_001079673, intron 4 of 25)	intron (NM_001079673, intron 4 of 25)	14983	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
133453	chr2	119695051	119696150	+	0	NA	intron (NR_148341, intron 6 of 16)	intron (NR_148341, intron 6 of 16)	16399	NM_030577	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
174741	chr4	44629251	44629950	+	0	NA	intron (NM_182592, intron 3 of 5)	A-rich|Low_complexity|Low_complexity	22041	NM_182592	285525		NM_182592	ENSG00000177752	YIPF7	FinGER9|YIPFalpha1b|Yip1b	Yip1 domain family member 7	protein-coding
184584	chr5	102860901	102861300	+	0	NA	intron (NM_001364582, intron 1 of 24)	MLT1F|LTR|ERVL-MaLR	-4723	NM_138821	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
39318	chr11	59058071	59058880	+	0	NA	promoter-TSS (NR_033853)	promoter-TSS (NR_033853)	-23	NR_033853	283194		NR_033853	ENSG00000255240	LOC283194	-	uncharacterized LOC283194	ncRNA
219956	chr8	89725771	89726130	+	0	NA	intron (NR_125822, intron 1 of 4)	intron (NR_125822, intron 1 of 4)	31761	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
12120	chr1	100049501	100049700	+	0	NA	intron (NM_033055, intron 1 of 11)	L2c|LINE|L2	11505	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
187130	chr5	140429051	140429350	+	0	NA	intron (NM_020690, intron 1 of 35)	AluSg4|SINE|Alu	27367	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
9542	chr1	51512421	51513550	+	0	NA	intron (NM_001981, intron 1 of 24)	AluJr4|SINE|Alu	6281	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
135565	chr2	165610571	165610830	+	0	NA	intron (NM_024969, intron 2 of 4)	intron (NM_024969, intron 2 of 4)	38364	NM_024969	80034		NM_024969	ENSG00000178662	CSRNP3	FAM130A2|MBU1|PPP1R73|TAIP-2|TAIP2	cysteine and serine rich nuclear protein 3	protein-coding
177545	chr4	119041921	119042200	+	0	NA	3' UTR (NM_001128933, exon 4 of 4)	3' UTR (NM_001128933, exon 4 of 4)	-93772	NM_016599	51778		NM_016599	ENSG00000172399	MYOZ2	C4orf5|CMH16|CS-1|FATZ-2	myozenin 2	protein-coding
4907	chr1	23835271	23835630	+	0	NA	Intergenic	AluY|SINE|Alu	-9991	NM_001166059	3155		NM_000191	ENSG00000117305	HMGCL	HL|HMGCL1	3-hydroxy-3-methylglutaryl-CoA lyase	protein-coding
123122	chr19	51705171	51705330	+	0	NA	TTS (NM_001316972)	TTS (NM_001316972)	-11794	NR_108100	102238594		NR_108100	ENSG00000269959	SPACA6-AS1	LINC01129|SPACA6P-AS	SPACA6 antisense RNA 1	ncRNA
148213	chr20	63572571	63572730	+	0	NA	5' UTR (NM_001037335, exon 2 of 20)	5' UTR (NM_001037335, exon 2 of 20)	1589	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
154784	chr22	36756351	36756650	+	0	NA	intron (NR_134623, intron 2 of 3)	intron (NR_134623, intron 2 of 3)	19619	NM_006860	11020		NM_006860	ENSG00000100360	IFT27	BBS19|CFAP156|FAP156|RABL4|RAYL	intraflagellar transport 27	protein-coding
238481	chrX	153470001	153471550	+	0	NA	promoter-TSS (NM_017518)	promoter-TSS (NM_017518)	-144	NM_017518	55559		NM_017518	ENSG00000213397	HAUS7	UCHL5IP|UIP1	HAUS augmin like complex subunit 7	protein-coding
77455	chr15	84356021	84356300	+	0	NA	Intergenic	Intergenic	-66359	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
99647	chr17	50633901	50634100	+	0	NA	promoter-TSS (NM_003786)	promoter-TSS (NM_003786)	-881	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
90558	chr17	1507601	1508380	+	0	NA	intron (NM_016532, intron 6 of 11)	intron (NM_016532, intron 6 of 11)	8622	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
148982	chr21	14028701	14028900	+	0	NA	Intergenic	Intergenic	-48356	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
219606	chr8	80054901	80055500	+	0	NA	intron (NR_105034, intron 1 of 4)	intron (NR_105034, intron 1 of 4)	-24941	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
156486	chr22	41277271	41277430	+	0	NA	intron (NM_001278651, intron 3 of 16)	AluYa5|SINE|Alu	8837	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
141283	chr2	240150201	240150700	+	0	NA	Intergenic	Intergenic	-9792	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
144135	chr20	34016921	34017380	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-22783	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
119100	chr19	39320301	39321230	+	0	NA	promoter-TSS (NM_020862)	promoter-TSS (NM_020862)	98	NM_020862	57622		NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
74673	chr15	62047271	62047800	+	0	NA	intron (NM_017684, intron 1 of 82)	intron (NM_017684, intron 1 of 82)	12912	NM_017684	54832		NM_017684	ENSG00000129003	VPS13C	BLTP5C|PARK23	vacuolar protein sorting 13 homolog C	protein-coding
171574	chr3	196978251	196978970	+	0	NA	Intergenic	MIR|SINE|MIR	-9777	NM_025163	80235		NM_025163	ENSG00000119227	PIGZ	GPI-MT-IV|PIG-Z|SMP3	phosphatidylinositol glycan anchor biosynthesis class Z	protein-coding
141912	chr20	1002271	1002430	+	0	NA	promoter-TSS (NM_001040007)	promoter-TSS (NM_001040007)	-39	NM_001040007	343637		NM_001029871	ENSG00000101282	RSPO4	C20orf182|CRISTIN4	R-spondin 4	protein-coding
125882	chr2	24623421	24623680	+	0	NA	intron (NM_147233, intron 1 of 20)	Charlie1a|DNA|hAT-Charlie	39073	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
180215	chr5	1516401	1516800	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	-5744	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
231411	chr9	131057551	131058450	+	0	NA	intron (NM_006059, intron 12 of 27)	MIRb|SINE|MIR	-38476	NR_033701	83543		NM_031426	ENSG00000126878	AIF1L	C9orf58|IBA2	allograft inflammatory factor 1 like	protein-coding
39582	chr11	61172071	61172430	+	0	NA	Intergenic	Intergenic	-10824	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
60712	chr13	44139371	44139730	+	0	NA	intron (NR_132368, intron 1 of 3)	intron (NR_132368, intron 1 of 3)	-2778	NR_104064	101929212		NR_104064	ENSG00000227258	SMIM2-AS1	C13orf44-AS1|C3orf81-AS1	SMIM2 antisense RNA 1	ncRNA
178020	chr4	139371471	139371630	+	0	NA	intron (NM_057175, intron 15 of 19)	intron (NM_057175, intron 15 of 19)	-68999	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
48099	chr12	7608451	7608750	+	0	NA	Intergenic	L1PA13|LINE|L1	57308	NM_001644	339		NM_001644	ENSG00000111701	APOBEC1	APO1|APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme catalytic subunit 1	protein-coding
151003	chr21	44417601	44417800	+	0	NA	intron (NR_109964, intron 2 of 2)	intron (NR_109964, intron 2 of 2)	-7829	NM_001320352	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
232464	chr9	136197551	136198180	+	0	NA	intron (NM_178138, intron 5 of 5)	intron (NM_178138, intron 5 of 5)	3809	NM_001363746	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
147833	chr20	62742801	62743000	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	33956	NR_046224	100652730		NR_046224	ENSG00000228705	LINC00659	-	long intergenic non-protein coding RNA 659	ncRNA
164876	chr3	71079821	71080180	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-15076	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
154683	chr22	36370901	36371930	+	0	NA	intron (NM_002473, intron 1 of 40)	MLT1B|LTR|ERVL-MaLR	16552	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
51150	chr12	50133551	50133650	+	0	NA	non-coding (NR_138536, exon 10 of 11)	non-coding (NR_138536, exon 10 of 11)	21364	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
153350	chr22	24420471	24420630	+	0	NA	intron (NR_103546, intron 18 of 19)	intron (NR_103546, intron 18 of 19)	-3047	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
188	chr1	683321	683730	+	0	NA	Intergenic	L1MA7|LINE|L1	3129	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
130538	chr2	85659301	85659630	+	0	NA	3' UTR (NM_000542, exon 11 of 11)	3' UTR (NM_000542, exon 11 of 11)	8734	NM_001367281	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
190457	chr5	180069501	180070300	+	0	NA	intron (NM_001280801, intron 1 of 7)	intron (NM_001280801, intron 1 of 7)	1859	NM_018434	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
56444	chr12	113695951	113696050	+	0	NA	Intergenic	Intergenic	77683	NR_110026	100506465		NR_110025	ENSG00000249550	LINC01234	LCAL84|MBOP|onco-lncRNA-32	long intergenic non-protein coding RNA 1234	ncRNA
47428	chr12	3135501	3135900	+	0	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	58321	NM_006675	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
62930	chr13	111185801	111186230	+	0	NA	promoter-TSS (NM_001113513)	promoter-TSS (NM_001113513)	-779	NM_001113513	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
163923	chr3	52683471	52684300	+	0	NA	intron (NM_181042, intron 1 of 29)	intron (NM_181042, intron 1 of 29)	1714	NM_001350074	55193		NM_018313	ENSG00000163939	PBRM1	BAF180|PB1|RCC|SMARCH1	polybromo 1	protein-coding
135472	chr2	161357051	161357230	+	0	NA	intron (NM_005805, intron 3 of 11)	intron (NM_005805, intron 3 of 11)	48715	NM_005805	10213		NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	proteasome 26S subunit, non-ATPase 14	protein-coding
196228	chr6	42813901	42814100	+	0	NA	intron (NM_001318819, intron 3 of 13)	intron (NM_001318819, intron 3 of 13)	-7056	NM_015349	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
231597	chr9	131553451	131553750	+	0	NA	intron (NM_001365666, intron 1 of 3)	intron (NM_001365666, intron 1 of 3)	8077	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
101599	chr17	68104201	68105050	+	0	NA	intron (NR_027418, intron 2 of 5)	(AC)n|Simple_repeat|Simple_repeat	3070	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
89330	chr16	88742751	88743130	+	0	NA	non-coding (NR_120387, exon 1 of 3)	non-coding (NR_120387, exon 1 of 3)	173	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
76602	chr15	75362801	75363000	+	0	NA	intron (NM_001256494, intron 6 of 25)	intron (NM_001256494, intron 6 of 25)	5707	NM_006715	4123		NM_006715	ENSG00000140400	MAN2C1	CDDG2|MAN6A8|MANA|MANA1	mannosidase alpha class 2C member 1	protein-coding
105864	chr18	3073121	3073650	+	0	NA	intron (NM_019856, intron 35 of 36)	intron (NM_019856, intron 35 of 36)	-60241	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
106336	chr18	12990821	12992280	+	0	NA	intron (NM_032142, intron 1 of 44)	CpG	188	NM_032142	55125		NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
77937	chr15	89329301	89330230	+	0	NA	intron (NM_002693, intron 3 of 22)	MIRb|SINE|MIR	-2955	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
115098	chr19	14277171	14277330	+	0	NA	Intergenic	Intergenic	-56493	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
68705	chr14	90483421	90483880	+	0	NA	Intergenic	Intergenic	28420	NR_033986	400238		NR_033986	ENSG00000233208	LINC00642	-	long intergenic non-protein coding RNA 642	ncRNA
9416	chr1	47709301	47709880	+	0	NA	Intergenic	CpG	271546	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
155018	chr22	37421171	37421330	+	0	NA	intron (NM_052906, intron 1 of 2)	intron (NM_052906, intron 1 of 2)	6220	NR_110512	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
170776	chr3	188689301	188689500	+	0	NA	TTS (NR_029502)	TTS (NR_029502)	619	NR_029502	407020		NR_029502	ENSG00000207651	MIR28	MIRN28|hsa-mir-28|miR-28	microRNA 28	ncRNA
16810	chr1	155567621	155568200	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5107	NM_001366177	55870		NM_018489	ENSG00000116539	ASH1L	ASH1|ASH1L1|KMT2H|MRD52	ASH1 like histone lysine methyltransferase	protein-coding
143351	chr20	25862351	25862450	+	0	NA	Intergenic	SST1|Satellite|centr	-8379	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
1715	chr1	5514571	5514800	+	0	NA	Intergenic	Intergenic	348056	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
228871	chr9	112376751	112377750	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2659	NR_036651	84263		NM_032303	ENSG00000119471	HSDL2	C9orf99|SDR13C1	hydroxysteroid dehydrogenase like 2	protein-coding
202872	chr6	159931221	159931680	+	0	NA	Intergenic	L1MB3|LINE|L1	-37632	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
11637	chr1	91753731	91755050	+	0	NA	intron (NR_036634, intron 5 of 17)	intron (NR_036634, intron 5 of 17)	131761	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
21744	chr1	206829971	206830280	+	0	NA	intron (NM_013371, intron 1 of 6)	MIR3|SINE|MIR	1248	NM_013371	29949		NM_013371	ENSG00000142224	IL19	IL-10C|MDA1|NG.1|ZMDA1	interleukin 19	protein-coding
8039	chr1	38489871	38490050	+	0	NA	Intergenic	LTR79|LTR|ERVL	14764	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
239212	chrY	12925251	12926150	+	0	NA	Intergenic	HUERS-P2-int|LTR|ERV1	19995	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
153665	chr22	28880921	28881250	+	0	NA	Intergenic	L1MB7|LINE|L1	-2487	NM_001206998	84133		NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
183103	chr5	74631451	74632420	+	0	NA	intron (NR_046318, intron 1 of 1)	intron (NR_046318, intron 1 of 1)	-8088	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
91052	chr17	2930971	2931350	+	0	NA	intron (NM_001100398, intron 3 of 23)	AluSz|SINE|Alu	34735	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
11720	chr1	91877721	91878700	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	7941	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
137525	chr2	197202171	197202950	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	4569	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
120946	chr19	45685201	45685400	+	0	NA	Intergenic	Intergenic	6653	NM_001369752	6633		NM_004597	ENSG00000125743	SNRPD2	SMD2|SNRPD1|Sm-D2	small nuclear ribonucleoprotein D2 polypeptide	protein-coding
58407	chr12	131910771	131910930	+	0	NA	intron (NM_003565, intron 12 of 27)	intron (NM_003565, intron 12 of 27)	16228	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
5772	chr1	26499771	26501800	+	0	NA	Intergenic	CpG	28345	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
60516	chr13	41355351	41356400	+	0	NA	intron (NM_024561, intron 10 of 19)	intron (NM_024561, intron 10 of 19)	-43837	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
123279	chr19	53539971	53541300	+	0	NA	intron (NM_001317113, intron 2 of 4)	AluSx|SINE|Alu	1847	NM_001253800	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
138040	chr2	201363701	201364280	+	0	NA	Intergenic	L1PA16|LINE|L1	-6592	NM_139163	130540		NM_139163	ENSG00000155749	FLACC1	ALS2CR12	flagellum associated containing coiled-coil domains 1	protein-coding
39786	chr11	61951451	61952380	+	0	NA	exon (NM_004183, exon 2 of 11)	exon (NM_004183, exon 2 of 11)	1564	NM_004183	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
126217	chr2	26922721	26923050	+	0	NA	intron (NM_020134, intron 2 of 12)	intron (NM_020134, intron 2 of 12)	-47752	NM_012326	22924		NM_012326	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule associated protein RP/EB family member 3	protein-coding
91544	chr17	5019551	5019900	+	0	NA	intron (NR_120665, intron 1 of 1)	intron (NR_120665, intron 1 of 1)	368	NR_120665	102724009		NR_120665	ENSG00000227495	KIF1C-AS1	-	KIF1C antisense RNA 1	ncRNA
165335	chr3	88057321	88057580	+	0	NA	intron (NM_001008390, intron 2 of 3)	intron (NM_001008390, intron 2 of 3)	1546	NM_003663	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
196110	chr6	42372701	42372900	+	0	NA	intron (NM_033502, intron 2 of 17)	L2c|LINE|L2	79251	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
18892	chr1	168234071	168234230	+	0	NA	intron (NM_199344, intron 3 of 7)	AluSc|SINE|Alu	8146	NM_199344	375035		NM_199344	ENSG00000213064	SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
109914	chr19	1291501	1292000	+	0	NA	intron (NM_001405, intron 1 of 3)	intron (NM_001405, intron 1 of 3)	5877	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
188828	chr5	159097821	159098300	+	0	NA	promoter-TSS (NM_001364159)	promoter-TSS (NM_001364159)	-104	NM_001364159	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
15906	chr1	151613601	151613800	+	0	NA	intron (NM_030918, intron 1 of 11)	intron (NM_030918, intron 1 of 11)	1650	NM_030918	81609		NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin 27	protein-coding
73235	chr15	41666801	41667000	+	0	NA	intron (NM_001164273, intron 1 of 23)	L1ME4b|LINE|L1	6488	NM_001080541	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
18923	chr1	168440771	168440930	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	-18194	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
170465	chr3	185924301	185924800	+	0	NA	intron (NM_001243879, intron 2 of 7)	AluJr|SINE|Alu	13464	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
158449	chr22	50622301	50623600	+	0	NA	3' UTR (NM_001085425, exon 9 of 9)	3' UTR (NM_001085425, exon 9 of 9)	5202	NM_000487	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
70662	chr14	103070771	103070930	+	0	NA	Intergenic	LTR33|LTR|ERVL	-13301	NM_006035	9578		NM_006035	ENSG00000198752	CDC42BPB	CHOCNS|MRCKB	CDC42 binding protein kinase beta	protein-coding
20758	chr1	200994801	200995200	+	0	NA	intron (NM_017596, intron 15 of 33)	intron (NM_017596, intron 15 of 33)	28714	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
19534	chr1	178093651	178094150	+	0	NA	promoter-TSS (NR_027982)	promoter-TSS (NR_027982)	93	NR_027982	100302401		NR_027982	ENSG00000224687	RASAL2-AS1	-	RASAL2 antisense RNA 1	ncRNA
226014	chr9	41648251	41649080	+	0	NA	non-coding (NR_103714, exon 1 of 1)	non-coding (NR_103714, exon 1 of 1)	991	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
185454	chr5	131265451	131265830	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	1587	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
124308	chr19	58002251	58003450	+	0	NA	promoter-TSS (NM_001348025)	promoter-TSS (NM_001348025)	-30	NM_001348022	80095		NM_025027	ENSG00000166704	ZNF606	ZNF328	zinc finger protein 606	protein-coding
143800	chr20	32459171	32459330	+	0	NA	intron (NM_080616, intron 2 of 7)	AluJo|SINE|Alu	24240	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
21056	chr1	203278051	203278730	+	0	NA	Intergenic	Intergenic	-8762	NR_117097	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
115232	chr19	14507951	14508050	+	0	NA	Intergenic	Intergenic	9862	NM_001300914	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
101320	chr17	66655851	66656150	+	0	NA	intron (NM_002737, intron 5 of 16)	intron (NM_002737, intron 5 of 16)	-131072	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
52750	chr12	56645641	56647000	+	0	NA	promoter-TSS (NM_001686)	promoter-TSS (NM_001686)	-336	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
175438	chr4	71125121	71125450	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-61480	NM_001134742	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
220196	chr8	95557721	95558000	+	0	NA	intron (NR_038207, intron 2 of 2)	L1PA2|LINE|L1	-288659	NM_177965	157657		NM_177965	ENSG00000156172	CFAP418	BBS21|C8orf37|CORD16|FAP418|MOT25|RP64|smalltalk	cilia and flagella associated protein 418	protein-coding
53098	chr12	57757651	57757750	+	0	NA	intron (NM_138396, intron 2 of 3)	intron (NM_138396, intron 2 of 3)	2597	NM_138396	92979		NM_138396	ENSG00000139266	MARCHF9	MARCH-IX|MARCH9|RNF179	membrane associated ring-CH-type finger 9	protein-coding
68133	chr14	75526001	75526800	+	0	NA	intron (NM_006399, intron 2 of 2)	intron (NM_006399, intron 2 of 2)	3931	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
170572	chr3	186812271	186812430	+	0	NA	intron (NR_125409, intron 3 of 3)	SVA_D|Retroposon|SVA	-5655	NM_181573	5984		NM_002916	ENSG00000163918	RFC4	A1|RFC37	replication factor C subunit 4	protein-coding
120690	chr19	45159721	45159980	+	0	NA	intron (NM_198478, intron 1 of 3)	intron (NM_198478, intron 1 of 3)	300	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
22144	chr1	212037921	212038380	+	0	NA	intron (NM_001286229, intron 1 of 12)	MER6|DNA|TcMar-Tigger	2402	NM_016448	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
166187	chr3	111695401	111696130	+	0	NA	intron (NM_153268, intron 1 of 3)	MER44D|DNA|TcMar-Tigger	-18332	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
10411	chr1	65260921	65261180	+	0	NA	Intergenic	Intergenic	-3644	NM_001256865	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
129263	chr2	68384571	68384730	+	0	NA	intron (NM_002664, intron 4 of 8)	intron (NM_002664, intron 4 of 8)	19368	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
160368	chr3	27885601	27885800	+	0	NA	Intergenic	Intergenic	-51564	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
153801	chr22	29641301	29641500	+	0	NA	intron (NM_181825, intron 3 of 15)	intron (NM_181825, intron 3 of 15)	37767	NM_181829	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
140914	chr2	237707121	237708550	+	0	NA	intron (NM_001137551, intron 1 of 11)	L3|LINE|CR1	15630	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
107824	chr18	54209751	54210050	+	0	NA	intron (NM_003927, intron 1 of 6)	intron (NM_003927, intron 1 of 6)	12512	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
32068	chr10	101088821	101089080	+	0	NA	TTS (NR_130722)	TTS (NR_130722)	22567	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
124971	chr2	8835001	8835200	+	0	NA	intron (NR_145965, intron 1 of 29)	AluJr|SINE|Alu	2513	NM_001348740	57498		NM_020738	ENSG00000134313	KIDINS220	ARMS|SINO|VENARG	kinase D interacting substrate 220	protein-coding
116350	chr19	17864071	17864780	+	0	NA	Intergenic	Intergenic	1837	NR_000012	26780		NR_000012	ENSG00000207166	SNORA68	RNU68|SNORA68A|U68	small nucleolar RNA, H/ACA box 68	snoRNA
190622	chr5	181190601	181191100	+	0	NA	TTS (NR_108031)	TTS (NR_108031)	1058	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
231579	chr9	131516921	131517180	+	0	NA	intron (NR_148392, intron 13 of 20)	intron (NR_148392, intron 13 of 20)	14132	NM_001353196	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
101577	chr17	68052121	68052570	+	0	NA	Intergenic	LTR12C|LTR|ERV1	16385	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
126030	chr2	25348301	25348500	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-5810	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
205492	chr7	17906321	17906700	+	0	NA	intron (NM_015132, intron 1 of 25)	intron (NM_015132, intron 1 of 25)	33984	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
33755	chr10	122462821	122463300	+	0	NA	intron (NM_002775, intron 1 of 8)	intron (NM_002775, intron 1 of 8)	1507	NM_002775	5654		NM_002775	ENSG00000166033	HTRA1	ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11	HtrA serine peptidase 1	protein-coding
141859	chr20	641001	641250	+	0	NA	Intergenic	MIR|SINE|MIR	12075	NM_080725	140809		NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
71165	chr14	105033371	105033950	+	0	NA	Intergenic	CpG	-12577	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
25595	chr10	8050521	8051630	+	0	NA	non-coding (NR_024256, exon 2 of 2)	non-coding (NR_024256, exon 2 of 2)	1416	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
139382	chr2	221573201	221574400	+	0	NA	intron (NM_001304536, intron 1 of 18)	CpG-17047	402	NM_001304536	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
199536	chr6	118796171	118797100	+	0	NA	Intergenic	L1PA4|LINE|L1	13927	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
77548	chr15	84754571	84755130	+	0	NA	intron (NM_014630, intron 1 of 10)	intron (NM_014630, intron 1 of 10)	6258	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
114674	chr19	13090671	13090980	+	0	NA	intron (NM_001271043, intron 10 of 10)	intron (NM_001271043, intron 10 of 10)	12033	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
220168	chr8	95115601	95115800	+	0	NA	non-coding (NR_148913, exon 10 of 11)	non-coding (NR_148913, exon 10 of 11)	-18085	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
90445	chr17	1368001	1368730	+	0	NA	intron (NM_006761, intron 1 of 5)	AluSp|SINE|Alu	31857	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
226387	chr9	70393901	70394100	+	0	NA	intron (NM_001206, intron 1 of 1)	AluJb|SINE|Alu	20657	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
76979	chr15	78245771	78245930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11285	NM_001199377	23205		NM_015162	ENSG00000103740	ACSBG1	BG|BG1|BGM|GR-LACS|LPD	acyl-CoA synthetase bubblegum family member 1	protein-coding
36106	chr11	3055421	3055680	+	0	NA	intron (NM_001378136, intron 1 of 22).2	intron (NM_001378136, intron 1 of 22).2	1873	NM_001751	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
199811	chr6	127483901	127484680	+	0	NA	intron (NM_001012279, intron 4 of 11)	intron (NM_001012279, intron 4 of 11)	-24901	NM_014702	9729		NM_014702	ENSG00000189367	KIAA0408	-	KIAA0408	protein-coding
117026	chr19	18922301	18922800	+	0	NA	intron (NM_019070, intron 5 of 12)	intron (NM_019070, intron 5 of 12)	2835	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
132892	chr2	111346151	111346650	+	0	NA	intron (NR_136165, intron 1 of 3)	intron (NR_136165, intron 1 of 3)	-25309	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
71190	chr14	105057221	105057980	+	0	NA	intron (NM_001278695, intron 1 of 2)	AluSx1|SINE|Alu	7830	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
25560	chr10	7512221	7512800	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-101024	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
160396	chr3	28150921	28151230	+	0	NA	Intergenic	Intergenic	-90544	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
15337	chr1	149918571	149918880	+	0	NA	promoter-TSS (NM_001328674)	promoter-TSS (NM_001328674)	-881	NM_014849	9900		NM_014849	ENSG00000159164	SV2A	DEE113|SLC22B1|SV2	synaptic vesicle glycoprotein 2A	protein-coding
8205	chr1	39639201	39640030	+	0	NA	promoter-TSS (NM_014571)	promoter-TSS (NM_014571)	28	NM_014571	26508		NM_014571	ENSG00000163909	HEYL	HESR3|HEY3|HRT3|bHLHb33	hes related family bHLH transcription factor with YRPW motif like	protein-coding
57460	chr12	121937701	121937900	+	0	NA	intron (NM_144668, intron 5 of 21)	L2|LINE|L2	19208	NM_001178003	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
125707	chr2	20439571	20439800	+	0	NA	Intergenic	Intergenic	-7389	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
87020	chr16	68261371	68262350	+	0	NA	TTS (NM_012320)	TTS (NM_012320)	-2666	NM_003983	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
84762	chr16	30980171	30980330	+	0	NA	intron (NM_014712, intron 14 of 18)	intron (NM_014712, intron 14 of 18)	-4957	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
57108	chr12	121090001	121090230	+	0	NA	Intergenic	Intergenic	-42761	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
186482	chr5	138081071	138081600	+	0	NA	Intergenic	Intergenic	-2557	NM_058244	7478		NM_031933	ENSG00000061492	WNT8A	WNT8D	Wnt family member 8A	protein-coding
103742	chr17	78892751	78892850	+	0	NA	intron (NM_001243541, intron 2 of 2)	MER20|DNA|hAT-Charlie	10401	NM_001243540	100653515		NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
43870	chr11	88329551	88330050	+	0	NA	intron (NM_148170, intron 2 of 3)	AluSx|SINE|Alu	7936	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
137847	chr2	200765221	200765600	+	0	NA	intron (NR_135012, intron 21 of 30)	intron (NR_135012, intron 21 of 30)	-30233	NR_037886	100507140		NR_037886		LINC01792	-	long intergenic non-protein coding RNA 1792	ncRNA
175867	chr4	80005821	80006150	+	0	NA	intron (NM_001145794, intron 12 of 15)	intron (NM_001145794, intron 12 of 15)	67244	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
207849	chr7	50353201	50353500	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	34302	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
57801	chr12	123112601	123112800	+	0	NA	intron (NM_001300801, intron 1 of 25)	AluY|SINE|Alu	-7184	NM_001384660	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
57495	chr12	122092121	122092650	+	0	NA	intron (NM_014938, intron 1 of 16)	AluJb|SINE|Alu	13629	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
44794	chr11	113363651	113363750	+	0	NA	intron (NR_165392, intron 21 of 23)	intron (NR_165392, intron 21 of 23)	-24079	NM_178510	255239		NM_178510	ENSG00000170209	ANKK1	PKK2|sgK288	ankyrin repeat and kinase domain containing 1	protein-coding
62774	chr13	108326321	108326580	+	0	NA	Intergenic	Intergenic	56732	NM_006573	10673		NM_006573	ENSG00000102524	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4	TNF superfamily member 13b	protein-coding
113486	chr19	10044351	10044650	+	0	NA	intron (NR_027300, intron 6 of 29)	intron (NR_027300, intron 6 of 29)	3144	NR_027300	388503		NM_001013640	ENSG00000291164	C3P1	CPLP	complement component 3 precursor pseudogene	pseudo
208220	chr7	65251921	65252540	+	0	NA	Intergenic	CpG	111200	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
134721	chr2	144519921	144520850	+	0	NA	promoter-TSS (NR_033258)	promoter-TSS (NR_033258)	-266	NM_014795	9839		NM_014795	ENSG00000169554	ZEB2	HSPC082|SIP-1|SIP1|SMADIP1|ZFHX1B	zinc finger E-box binding homeobox 2	protein-coding
178593	chr4	151760571	151761600	+	0	NA	promoter-TSS (NM_001363341)	promoter-TSS (NM_001363341)	-62	NM_001363341	5188		NM_004564	ENSG00000059691	GATB	COXPD41|HSPC199|PET112|PET112L	glutamyl-tRNA amidotransferase subunit B	protein-coding
209930	chr7	92573251	92573550	+	0	NA	intron (NM_001040057, intron 9 of 11)	AluJr4|SINE|Alu	16649	NM_001288584	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
82223	chr16	15024651	15025550	+	0	NA	intron (NM_001324019, intron 13 of 22)	intron (NM_001324019, intron 13 of 22)	-14703	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
1146	chr1	2183771	2184130	+	0	NA	promoter-TSS (NR_146290)	promoter-TSS (NR_146290)	-75	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
225135	chr9	33629671	33629830	+	0	NA	Intergenic	Intergenic	5525	NR_003573	304		NR_003573		ANXA2P2	ANX2L2|ANX2P2|LPC2B	annexin A2 pseudogene 2	pseudo
164439	chr3	59388601	59388880	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	269757	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
62615	chr13	100584871	100585750	+	0	NA	intron (NM_001195087, intron 1 of 2)	MER58A|DNA|hAT-Charlie	3482	NM_001195087	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
197921	chr6	89475551	89476100	+	0	NA	intron (NM_014942, intron 1 of 15)	L1M5|LINE|L1	42647	NM_014942	22881		NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
172469	chr4	2046451	2047300	+	0	NA	Intergenic	Intergenic	4880	NM_001141936	401115		NM_001141936	ENSG00000243449	NICOL1	C4orf48|CHR4_55|NICOL	NELL2 interacting cell ontogeny regulator 1	protein-coding
114773	chr19	13750521	13750780	+	0	NA	intron (NM_001320569, intron 1 of 8)	AluSx1|SINE|Alu	2755	NM_001320569	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
63580	chr14	20467801	20468250	+	0	NA	Intergenic	MER119|DNA|hAT-Charlie	-1381	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
146972	chr20	52886451	52886550	+	0	NA	Intergenic	Intergenic	-85858	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
103411	chr17	78198721	78199380	+	0	NA	intron (NM_001010982, intron 2 of 10)	L1ME4b|LINE|L1	11733	NR_027083	125061		NM_001010982	ENSG00000183077	AFMID	FKF|KF|KFA	arylformamidase	protein-coding
99848	chr17	55424721	55424980	+	0	NA	Intergenic	Intergenic	-3015	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
236471	chrX	71608951	71609450	+	0	NA	intron (NM_052957, intron 10 of 12)	intron (NM_052957, intron 10 of 12)	9311	NM_001142797	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
130729	chr2	86770751	86771050	+	0	NA	intron (NM_022780, intron 7 of 8)	intron (NM_022780, intron 7 of 8)	20013	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
137341	chr2	196141321	196141600	+	0	NA	intron (NM_004226, intron 5 of 7)	AluSx|SINE|Alu	30118	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
62432	chr13	99313321	99313900	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-6211	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
175361	chr4	70505171	70505400	+	0	NA	Intergenic	Intergenic	-13284	NM_212557	401138		NM_212557	ENSG00000187689	AMTN	AI3B|UNQ689	amelotin	protein-coding
117277	chr19	19472551	19473330	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	37877	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
200727	chr6	137698671	137699550	+	0	NA	Intergenic	Intergenic	33464	NR_125867	102723649		NR_125867	ENSG00000230533	LINC03004	-	long intergenic non-protein coding RNA 3004	ncRNA
162890	chr3	49387651	49388900	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluJb|SINE|Alu	23701	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
216423	chr8	19388221	19388880	+	0	NA	intron (NM_001174160, intron 7 of 8)	MIR|SINE|MIR	74574	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
5640	chr1	26235301	26235980	+	0	NA	intron (NM_001319944, intron 1 of 13)	AluSp|SINE|Alu	1440	NM_022778	64793		NM_022778	ENSG00000130695	CEP85	CCDC21	centrosomal protein 85	protein-coding
16545	chr1	154958671	154958830	+	0	NA	3' UTR (NM_138300, exon 3 of 3)	3' UTR (NM_138300, exon 3 of 3)	-2651	NM_001317735	57326		NM_020524	ENSG00000163346	PBXIP1	HPIP	PBX homeobox interacting protein 1	protein-coding
160431	chr3	28315651	28316050	+	0	NA	intron (NM_001331186, intron 3 of 4)	Tigger3a|DNA|TcMar-Tigger	-32871	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
61921	chr13	77810471	77810630	+	0	NA	Intergenic	Intergenic	-8387	NR_103853	100505518		NR_103853		EDNRB-AS1	-	EDNRB antisense RNA 1	ncRNA
176514	chr4	94610851	94610950	+	0	NA	intron (NM_001256426, intron 10 of 16)	intron (NM_001256426, intron 10 of 16)	146633	NR_121610	100507012		NR_121610	ENSG00000249599	BMPR1B-DT	BMPR1B-AS1	BMPR1B divergent transcript	ncRNA
65929	chr14	55337511	55338680	+	0	NA	intron (NM_152231, intron 1 of 1)	AluSc8|SINE|Alu	65941	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
55884	chr12	109711901	109712530	+	0	NA	Intergenic	Intergenic	-1610	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
169380	chr3	160447451	160447780	+	0	NA	intron (NR_148403, intron 1 of 20)	intron (NR_148403, intron 1 of 20)	2171	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
184262	chr5	96714021	96714280	+	0	NA	intron (NM_173060, intron 1 of 28)	MIRb|SINE|MIR	11490	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
53328	chr12	64620971	64622000	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-1024	NR_030347	693129		NR_030347	ENSG00000207546	MIR548C	MIRN548C	microRNA 548c	ncRNA
99141	chr17	49338001	49338280	+	0	NA	intron (NR_135579, intron 1 of 7)	AluJr|SINE|Alu	-23025	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
154032	chr22	30456801	30457380	+	0	NA	intron (NM_001376914, intron 12 of 12)	intron (NM_001376914, intron 12 of 12)	14927	NM_174975	266629		NM_174975	ENSG00000100012	SEC14L3	TAP2	SEC14 like lipid binding 3	protein-coding
143214	chr20	24963921	24964180	+	0	NA	intron (NM_020531, intron 8 of 8)	intron (NM_020531, intron 8 of 8)	14781	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
220072	chr8	93960971	93961200	+	0	NA	Intergenic	Intergenic	44138	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
158476	chr22	50758171	50758330	+	0	NA	intron (NR_026981, intron 1 of 3)	AluSq|SINE|Alu	1164	NR_026981	284942		NM_203302	ENSG00000291064	RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
62254	chr13	98556651	98558750	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	19407	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
2170	chr1	8463101	8463880	+	0	NA	intron (NM_012102, intron 12 of 23)	intron (NM_012102, intron 12 of 23)	31423	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
196363	chr6	43232221	43232680	+	0	NA	Intergenic	Intergenic	-2969	NM_006443	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
33275	chr10	114526161	114527880	+	0	NA	promoter-TSS (NM_001322890)	promoter-TSS (NM_001322890)	-107	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
40768	chr11	64860501	64862600	+	0	NA	intron (NM_001282444, intron 4 of 6)	intron (NM_001282444, intron 4 of 6)	-16897	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
179610	chr4	185534971	185535680	+	0	NA	intron (NR_047562, intron 1 of 5)	CpG	182	NM_001114107	27295		NM_014476	ENSG00000154553	PDLIM3	ALP	PDZ and LIM domain 3	protein-coding
73313	chr15	41896251	41896350	+	0	NA	non-coding (NR_135681, exon 3 of 4)	non-coding (NR_135681, exon 3 of 4)	-2247	NM_016642	51332		NM_016642	ENSG00000137877	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin beta, non-erythrocytic 5	protein-coding
41066	chr11	65496401	65498170	+	0	NA	promoter-TSS (NR_002819)	promoter-TSS (NR_002819)	-453	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
211045	chr7	102435401	102435980	+	0	NA	intron (NM_032831, intron 1 of 2)	AluSx1|SINE|Alu	2115	NM_032831	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
15139	chr1	148791421	148792200	+	0	NA	intron (NR_158171, intron 1 of 4).2	intron (NR_158171, intron 1 of 4).2	159	NR_158171	100996716		NR_158171		SEC22B2P	CH17-189H20.1|SEC22B2	SEC22 homolog B2, pseudogene	pseudo
11131	chr1	86616951	86617250	+	0	NA	intron (NR_135837, intron 4 of 4)	THE1D|LTR|ERVL-MaLR	-17176	NR_024604	9629		NM_004921	ENSG00000291014	CLCA3P	CLCA3	chloride channel accessory 3, pseudogene	pseudo
136255	chr2	174631371	174631930	+	0	NA	intron (NM_001375832, intron 1 of 8)	intron (NM_001375832, intron 1 of 8)	2955	NM_001375837	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
123246	chr19	53189701	53189900	+	0	NA	intron (NM_024733, intron 1 of 3)	LTR13|LTR|ERVK	3558	NM_024733	79788		NM_024733	ENSG00000197497	ZNF665	ZFP160L	zinc finger protein 665	protein-coding
93905	chr17	21267851	21268980	+	0	NA	Intergenic	MIR3|SINE|MIR	-15005	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
48570	chr12	10285871	10286980	+	0	NA	intron (NM_001351060, intron 2 of 8)	MIR|SINE|MIR	-18021	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
11838	chr1	92953401	92954230	+	0	NA	intron (NM_001006605, intron 1 of 4)	L1MB2|LINE|L1	7647	NM_001006605	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
32994	chr10	110534621	110534880	+	0	NA	Intergenic	Intergenic	-32945	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
226881	chr9	78213571	78213950	+	0	NA	Intergenic	Intergenic	-22315	NM_001098802	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
233599	chrX	328671	329350	+	0	NA	Intergenic	(TCCCCCC)n|Simple_repeat|Simple_repeat	9865	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
228399	chr9	99140651	99140990	+	0	NA	intron (NM_001130916, intron 3 of 7)	intron (NM_001130916, intron 3 of 7)	35707	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
169234	chr3	157140601	157140800	+	0	NA	Intergenic	Intergenic	-17698	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
103597	chr17	78716201	78716400	+	0	NA	intron (NM_017456, intron 1 of 12)	HAL1ME|LINE|L1	732	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
199317	chr6	112296271	112296430	+	0	NA	intron (NR_121193, intron 2 of 2)	L2a|LINE|L2	-41635	NM_001105209	3910		NM_002290	ENSG00000112769	LAMA4	CMD1JJ|LAMA3|LAMA4*-1	laminin subunit alpha 4	protein-coding
217074	chr8	23681171	23681330	+	0	NA	exon (NM_001256339, exon 3 of 3)	exon (NM_001256339, exon 3 of 3)	1639	NM_001256339	4824		NM_006167	ENSG00000167034	NKX3-1	BAPX2|NKX3|NKX3.1|NKX3A	NK3 homeobox 1	protein-coding
120979	chr19	45721371	45721880	+	0	NA	intron (NM_001329633, intron 1 of 1)	AluSc8|SINE|Alu	1871	NM_001329634	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
168924	chr3	152351701	152351900	+	0	NA	intron (NM_001376837, intron 2 of 9)	MIR|SINE|MIR	-10810	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
69737	chr14	98711571	98711730	+	0	NA	promoter-TSS (NR_161369)	promoter-TSS (NR_161369)	37	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
40539	chr11	64308271	64308530	+	0	NA	intron (NM_004451, intron 2 of 6)	AluSx|SINE|Alu	2173	NM_001282450	2101		NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen related receptor alpha	protein-coding
68880	chr14	91326271	91326530	+	0	NA	intron (NM_001080414, intron 10 of 29)	AluSx1|SINE|Alu	-72520	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
114120	chr19	11154151	11154330	+	0	NA	intron (NM_001317033, intron 1 of 4)	L1MB3|LINE|L1	1542	NM_001317033								
214626	chr7	150734371	150734600	+	0	NA	intron (NM_001199577, intron 3 of 5)	MER81|DNA|hAT-Blackjack	-2863	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
52270	chr12	54505051	54505150	+	0	NA	intron (NM_001184976, intron 3 of 30)	MIRc|SINE|MIR	6322	NM_001184976	3071		NM_005337	ENSG00000123338	NCKAP1L	HEM1|IMD72	NCK associated protein 1 like	protein-coding
53964	chr12	73400621	73400700	+	0	NA	Intergenic	L1PA2|LINE|L1	241470	NR_110130	101928137		NR_110130	ENSG00000258123	LINC02444	-	long intergenic non-protein coding RNA 2444	ncRNA
7941	chr1	37545101	37545500	+	0	NA	intron (NM_024700, intron 2 of 3)	intron (NM_024700, intron 2 of 3)	8993	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
97719	chr17	44352701	44352900	+	0	NA	TTS (NM_198475)	TTS (NM_198475)	7498	NM_002087	2896		NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin precursor	protein-coding
133188	chr2	112984651	112985550	+	0	NA	3' UTR (NM_001278568, exon 4 of 4)	3' UTR (NM_001278568, exon 4 of 4)	7094	NM_019618	56300		NM_019618	ENSG00000136688	IL36G	IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2	interleukin 36 gamma	protein-coding
87390	chr16	70475451	70475750	+	0	NA	intron (NM_145059, intron 19 of 23)	intron (NM_145059, intron 19 of 23)	21005	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
10150	chr1	60832401	60832800	+	0	NA	Intergenic	Intergenic	-7016	NR_110628	101926964		NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
79997	chr16	1872101	1872880	+	0	NA	promoter-TSS (NM_152764)	promoter-TSS (NM_152764)	-326	NM_001163560	254528		NM_152764	ENSG00000162039	MEIOB	C16orf73|POF23|SPGF22|gs129	meiosis specific with OB-fold	protein-coding
147443	chr20	58913671	58914080	+	0	NA	Intergenic	Intergenic	21712	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
92528	chr17	8929671	8930230	+	0	NA	intron (NM_001142633, intron 1 of 18)	L1PB3|LINE|L1	-17433	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
74505	chr15	60349871	60350150	+	0	NA	intron (NM_001002857, intron 12 of 13)	intron (NM_001002857, intron 12 of 13)	47976	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
56483	chr12	116210901	116211100	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	-62346	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
20278	chr1	195499921	195500000	+	0	NA	Intergenic	Intergenic	588755	NR_146895	105371673		NR_146895		LINC01724	-	long intergenic non-protein coding RNA 1724	ncRNA
28980	chr10	63256771	63257780	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSz|SINE|Alu	11948	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
85045	chr16	31877351	31878550	+	0	NA	intron (NM_001265588, intron 2 of 4)	MER21C|LTR|ERVL	4143	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
168042	chr3	136917751	136917850	+	0	NA	intron (NM_001291999, intron 1 of 3)	intron (NM_001291999, intron 1 of 3)	-12702	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
199084	chr6	111661551	111662050	+	0	NA	exon (NM_153048, exon 11 of 11)	exon (NM_153048, exon 11 of 11)	-55526	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
3922	chr1	17429301	17429500	+	0	NA	intron (NM_018715, intron 2 of 12).2	intron (NM_018715, intron 2 of 12).2	9136	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
202428	chr6	157953801	157954000	+	0	NA	Intergenic	Intergenic	-27963	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
57286	chr12	121640471	121641480	+	0	NA	intron (NM_032790, intron 2 of 2)	MIRc|SINE|MIR	14425	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
207876	chr7	50382221	50382700	+	0	NA	intron (NM_001220771, intron 3 of 3)	intron (NM_001220771, intron 3 of 3)	63412	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
153307	chr22	24186701	24187030	+	0	NA	intron (NM_019601, intron 10 of 14)	intron (NM_019601, intron 10 of 14)	5378	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
185040	chr5	115634171	115634930	+	0	NA	Intergenic	Intergenic	-8371	NM_001164469	100302736		NM_001164468	ENSG00000251201	TMED7-TICAM2	MyD88-4|TICAM-2|TICAM2|TIRAP3|TIRP|TRAM	TMED7-TICAM2 readthrough	protein-coding
122975	chr19	50794251	50795300	+	0	NA	intron (NM_033068, intron 9 of 10)	intron (NM_033068, intron 9 of 10)	4350	NR_003068	692203		NR_003068	ENSG00000221381	SNORD88B	HBII-180B	small nucleolar RNA, C/D box 88B	snoRNA
87365	chr16	70410021	70410480	+	0	NA	intron (NM_006927, intron 1 of 6)	AluY|SINE|Alu	28850	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
230744	chr9	128880671	128881300	+	0	NA	intron (NM_001352995, intron 1 of 14)	L1ME4b|LINE|L1	965	NM_004059	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
45550	chr11	118776601	118777000	+	0	NA	intron (NM_004397, intron 4 of 13)	AluSc8|SINE|Alu	14148	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
57073	chr12	121018301	121019200	+	0	NA	Intergenic	AluSg4|SINE|Alu	-2263	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
48621	chr12	10375551	10376200	+	0	NA	intron (NR_120430, intron 2 of 3)	intron (NR_120430, intron 2 of 3)	12106	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
13592	chr1	116345301	116346280	+	0	NA	Intergenic	MIRb|SINE|MIR	-27454	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
228093	chr9	96422801	96423300	+	0	NA	Intergenic	AluSz|SINE|Alu	-4680	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
21783	chr1	206932501	206932730	+	0	NA	intron (NM_002644, intron 7 of 10)	intron (NM_002644, intron 7 of 10)	-10674	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
190400	chr5	179805671	179806250	+	0	NA	promoter-TSS (NM_001142298).2	promoter-TSS (NM_001142298).2	-433	NM_001142298	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
72481	chr15	32594821	32595080	+	0	NA	intron (NM_001282494, intron 1 of 18).3	intron (NM_001282494, intron 1 of 18).3	1494	NM_001282494	643699		NM_001282494	ENSG00000232653	GOLGA8N	GOLGA8R	golgin A8 family member N	protein-coding
135828	chr2	170505951	170506250	+	0	NA	intron (NR_045682, intron 28 of 35)	intron (NR_045682, intron 28 of 35)	-155157	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
168199	chr3	141193271	141193430	+	0	NA	Intergenic	L1PA13|LINE|L1	-38475	NM_152282	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
186995	chr5	139741421	139741880	+	0	NA	intron (NR_105053, intron 2 of 2)	intron (NR_105053, intron 2 of 2)	4573	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
217938	chr8	38104151	38104250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1293	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
50637	chr12	48714151	48714600	+	0	NA	intron (NM_001240, intron 2 of 8)	intron (NM_001240, intron 2 of 8)	2332	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
119157	chr19	39393171	39393330	+	0	NA	intron (NM_017592, intron 2 of 3)	AluSx|SINE|Alu	1872	NM_001317770	55588		NM_017592	ENSG00000063322	MED29	IXL|MED2	mediator complex subunit 29	protein-coding
138454	chr2	206245301	206245580	+	0	NA	intron (NR_104359, intron 2 of 5).2	intron (NR_104359, intron 2 of 5).2	-27393	NM_001261453	2825		NM_005279	ENSG00000183671	CMKLR2	GPR1	chemerin chemokine-like receptor 2	protein-coding
82706	chr16	20804921	20805380	+	0	NA	intron (NM_080663, intron 1 of 10)	AluSp|SINE|Alu	1322	NM_080663	112479		NM_080663	ENSG00000196678	ERI2	EXOD1|ZGRF5	ERI1 exoribonuclease family member 2	protein-coding
36939	chr11	10909551	10909650	+	0	NA	Intergenic	Intergenic	51383	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
201453	chr6	148557721	148558050	+	0	NA	Intergenic	L2a|LINE|L2	48734	NM_001346509	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
132725	chr2	109174221	109174480	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-32762	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
21128	chr1	203647671	203648700	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	20248	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
96511	chr17	40325351	40328380	+	0	NA	intron (NM_001145301, intron 1 of 8)	intron (NM_001145301, intron 1 of 8)	8620	NM_001145302	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
39053	chr11	47917601	47919030	+	0	NA	Intergenic	Intergenic	-62244	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
121299	chr19	46731121	46731850	+	0	NA	intron (NM_001039877, intron 5 of 17)	intron (NM_001039877, intron 5 of 17)	-14358	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
12577	chr1	108827971	108828430	+	0	NA	intron (NM_152763, intron 10 of 15)	intron (NM_152763, intron 10 of 15)	28894	NM_152763	254268		NM_152763	ENSG00000162641	AKNAD1	C1orf62	AKNA domain containing 1	protein-coding
33622	chr10	119625821	119626150	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-25395	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
215802	chr8	2220471	2220630	+	0	NA	Intergenic	AluSx1|SINE|Alu	143961	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
196069	chr6	42223821	42224080	+	0	NA	TTS (NM_001297573)	TTS (NM_001297573)	-6089	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
205985	chr7	26180971	26181550	+	0	NA	intron (NM_004289, intron 2 of 3)	AluJb|SINE|Alu	19486	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
36288	chr11	3810471	3810830	+	0	NA	intron (NR_144430, intron 1 of 3)	intron (NR_144430, intron 1 of 3)	2090	NR_104272	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
231546	chr9	131475251	131475350	+	0	NA	exon (NM_001384822, exon 16 of 31)	exon (NM_001384822, exon 16 of 31)	-10365	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
19115	chr1	171500871	171501430	+	0	NA	intron (NM_015172, intron 1 of 33)	AluJb|SINE|Alu	15620	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
13261	chr1	112716201	112716830	+	0	NA	Intergenic	Intergenic	-1187	NM_005167	333926		NM_005167	ENSG00000155367	PPM1J	PP2C-zeta|PP2CZ|PP2Czeta|PPP2CZ	protein phosphatase, Mg2+/Mn2+ dependent 1J	protein-coding
230643	chr9	128686021	128687250	+	0	NA	intron (NM_001248000, intron 1 of 7)	intron (NM_001248000, intron 1 of 7)	1563	NM_001248000	6418		NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|MRD58|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
148778	chr21	8209501	8210600	+	0	NA	non-coding (NR_003286, exon 1 of 1)	non-coding (NR_003286, exon 1 of 1)	419	NR_145820	106631781		NR_145820		RNA18SN1	RNA18S4	RNA, 18S ribosomal N1	rRNA
129686	chr2	70475301	70475530	+	0	NA	intron (NR_046798, intron 1 of 2)	MIRb|SINE|MIR	6225	NR_046798	100874273		NR_046798	ENSG00000224606	TGFA-IT1	-	TGFA intronic transcript 1	ncRNA
25829	chr10	11211971	11212650	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	47280	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
229180	chr9	114594121	114595050	+	0	NA	intron (NM_004888, intron 2 of 2)	AluSg|SINE|Alu	6816	NM_004888	9550		NM_004888	ENSG00000136888	ATP6V1G1	ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10	ATPase H+ transporting V1 subunit G1	protein-coding
21821	chr1	207327471	207328600	+	0	NA	intron (NM_001300904, intron 5 of 10)	intron (NM_001300904, intron 5 of 10)	6357	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
54145	chr12	76550501	76550900	+	0	NA	intron (NM_001319652, intron 1 of 25)	MER30|DNA|hAT-Charlie	9071	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
169499	chr3	169831321	169831600	+	0	NA	intron (NM_001080460, intron 3 of 4)	(T)n|Simple_repeat|Simple_repeat	9569	NM_001080460	344657		NM_001080460	ENSG00000188306	LRRIQ4	LRRC64	leucine rich repeats and IQ motif containing 4	protein-coding
49376	chr12	22408851	22411330	+	0	NA	Intergenic	Intergenic	-75376	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
13460	chr1	114513071	114513230	+	0	NA	Intergenic	L2a|LINE|L2	-1947	NM_033020	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
199661	chr6	122444251	122444550	+	0	NA	3' UTR (NM_020755, exon 10 of 10)	3' UTR (NM_020755, exon 10 of 10)	27407	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
165387	chr3	94068921	94069430	+	0	NA	intron (NM_022072, intron 2 of 5)	intron (NM_022072, intron 2 of 5)	6114	NM_022072	63899		NM_022072	ENSG00000178694	NSUN3	COXPD48|MST077|MSTP077	NOP2/Sun RNA methyltransferase 3	protein-coding
206443	chr7	32875351	32875650	+	0	NA	intron (NM_015483, intron 2 of 3)	AluJo|SINE|Alu	16260	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
6158	chr1	27402171	27402580	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	9753	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
107373	chr18	46040371	46041050	+	0	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	31550	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
74402	chr15	58931951	58932330	+	0	NA	intron (NR_135043, intron 1 of 18)	intron (NR_135043, intron 1 of 18)	1539	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
13108	chr1	111625851	111625950	+	0	NA	intron (NM_001291896, intron 1 of 7)	BC200|scRNA|scRNA	-5502	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
210747	chr7	100669951	100670250	+	0	NA	Intergenic	L2a|LINE|L2	-3640	NM_005273	2783		NM_005273	ENSG00000172354	GNB2	HG2C1|SSS4|SSS4; NEDHYDF	G protein subunit beta 2	protein-coding
85232	chr16	48164701	48165180	+	0	NA	TTS (NM_033151)	TTS (NM_033151)	-18170	NM_033226	94160		NM_033226	ENSG00000140798	ABCC12	MRP9	ATP binding cassette subfamily C member 12	protein-coding
175789	chr4	77800251	77800350	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluJr4|SINE|Alu	18764	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
204990	chr7	6434201	6434400	+	0	NA	intron (NM_001142936, intron 3 of 12)	intron (NM_001142936, intron 3 of 12)	13654	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
158551	chr3	4394001	4394600	+	0	NA	intron (NM_182760, intron 7 of 8)	AluJb|SINE|Alu	72969	NM_182760	285362		NM_182760	ENSG00000144455	SUMF1	AAPA3037|FGE|UNQ3037	sulfatase modifying factor 1	protein-coding
200358	chr6	134123521	134124150	+	0	NA	Intergenic	Intergenic	-6155	NR_037938	387065		NR_037938		HMGA1P7	HMGA1L7	high mobility group AT-hook 1 pseudogene 7	pseudo
46358	chr11	126059271	126059430	+	0	NA	intron (NM_001243597, intron 1 of 19)	intron (NM_001243597, intron 1 of 19)	3516	NM_001378964	50937		NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|Ihog|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
78854	chr15	100331801	100332000	+	0	NA	intron (NM_139057, intron 2 of 21)	MER5A|DNA|hAT-Charlie	10075	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
13801	chr1	117537251	117537650	+	0	NA	Intergenic	L2-3_Crp|LINE|L2	68320	NR_121626	100996263		NR_121626	ENSG00000236866	TENT5C-DT	-	TENT5C divergent transcript	ncRNA
13495	chr1	114723921	114724180	+	0	NA	intron (NM_001242891, intron 16 of 20)	intron (NM_001242891, intron 16 of 20)	-7279	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
4187	chr1	19434621	19434880	+	0	NA	intron (NM_001313932, intron 1 of 4)	AluJb|SINE|Alu	49545	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
223545	chr8	144149721	144150100	+	0	NA	intron (NM_001288814, intron 1 of 41)	intron (NM_001288814, intron 1 of 41)	1265	NM_001288814	727957		NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat like repeat family member 1	protein-coding
238345	chrX	149549051	149549350	+	0	NA	TTS (NM_001324280)	TTS (NM_001324280)	724	NM_001323079	101928917		NM_001323079	ENSG00000283697	HSFX3	-	heat shock transcription factor family, X-linked member 3	protein-coding
146876	chr20	51499121	51499550	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	43384	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
148550	chr20	64231721	64232180	+	0	NA	intron (NM_004535, intron 18 of 22)	intron (NM_004535, intron 18 of 22)	-23745	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
85454	chr16	50627151	50627880	+	0	NA	intron (NM_033119, intron 6 of 9)	intron (NM_033119, intron 6 of 9)	-41340	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
134858	chr2	148678051	148678880	+	0	NA	intron (NM_015630, intron 1 of 13)	LTR12C|LTR|ERV1	33714	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
222794	chr8	142303901	142304480	+	0	NA	intron (NM_001366903, intron 9 of 9)	intron (NM_001366903, intron 9 of 9)	98992	NM_001366901	203062		NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
236556	chrX	72265351	72265680	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	11733	NM_001007	6191		NM_001007	ENSG00000198034	RPS4X	CCG2|DXS306|RPS4|S4|SCAR|SCR10|eS4	ribosomal protein S4 X-linked	protein-coding
238870	chrX	154531721	154532250	+	0	NA	3' UTR (NM_001360016, exon 13 of 13)	3' UTR (NM_001360016, exon 13 of 13)	-9253	NM_001377312	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
19614	chr1	179894071	179894230	+	0	NA	intron (NM_015602, intron 3 of 9)	AluYc|SINE|Alu	11865	NM_001267578	26092		NM_015602	ENSG00000143337	TOR1AIP1	LAP1|LAP1B|LAP1C|LGMD2Y	torsin 1A interacting protein 1	protein-coding
84996	chr16	31472701	31473830	+	0	NA	promoter-TSS (NM_015927)	promoter-TSS (NM_015927)	60	NM_015927	7041		NM_015927	ENSG00000140682	TGFB1I1	ARA55|HIC-5|HIC5|TSC-5	transforming growth factor beta 1 induced transcript 1	protein-coding
95285	chr17	35521171	35522550	+	0	NA	intron (NM_001363830, intron 2 of 4)	AluJb|SINE|Alu	16001	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
167697	chr3	130744501	130744700	+	0	NA	exon (NM_014602, exon 2 of 20)	exon (NM_014602, exon 2 of 20)	2229	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
54644	chr12	92931021	92931800	+	0	NA	Intergenic	L2a|LINE|L2	-2115	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
19775	chr1	182236301	182236500	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	77661	NR_104175	400799		NR_104175		LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
172927	chr4	3509421	3509900	+	0	NA	non-coding (NR_110005, exon 8 of 8)	non-coding (NR_110005, exon 8 of 8)	22489	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
228480	chr9	99906401	99908200	+	0	NA	promoter-TSS (NR_038853)	promoter-TSS (NR_038853)	646	NM_017919	55014		NM_017919	ENSG00000136874	STX17	-	syntaxin 17	protein-coding
76473	chr15	74864901	74865580	+	0	NA	intron (NM_001320778, intron 1 of 9)	AluSx|SINE|Alu	8125	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
189229	chr5	171913201	171913700	+	0	NA	intron (NM_033645, intron 1 of 11)	intron (NM_033645, intron 1 of 11)	93188	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
60636	chr13	42377701	42378550	+	0	NA	Intergenic	Intergenic	-46767	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
188939	chr5	160471771	160472300	+	0	NA	intron (NR_132748, intron 1 of 1)	MER20|DNA|hAT-Charlie	-2367	NR_036095	100422938		NR_036095		MIR3142	-	microRNA 3142	ncRNA
157256	chr22	43499801	43500200	+	0	NA	intron (NM_001362786, intron 5 of 6)	(TGGTGG)n|Simple_repeat|Simple_repeat	-16254	NR_046563	100874197		NR_046563		EFCAB6-AS1	-	EFCAB6 antisense RNA 1	ncRNA
166135	chr3	111539301	111540350	+	0	NA	Intergenic	Intergenic	-2372	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
195310	chr6	36591571	36592630	+	0	NA	Intergenic	AluJb|SINE|Alu	-2213	NR_036610	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
7319	chr1	32647501	32647930	+	0	NA	intron (NM_001366257, intron 1 of 6)	MER1A|DNA|hAT-Charlie	2835	NM_001366278	339487		NM_178547	ENSG00000176261	ZBTB8OS	ARCH|ARCH2	zinc finger and BTB domain containing 8 opposite strand	protein-coding
77276	chr15	82043421	82043730	+	0	NA	exon (NM_032246, exon 2 of 2)	exon (NM_032246, exon 2 of 2)	2443	NM_032246	84206		NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
201025	chr6	141495821	141496080	+	0	NA	Intergenic	L1MD3|LINE|L1	-637209	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
97179	chr17	42672921	42673280	+	0	NA	intron (NM_024927, intron 6 of 12)	intron (NM_024927, intron 6 of 12)	2911	NR_073574	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
72280	chr15	30841901	30842330	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	24079	NR_072991	390561		NR_072991		HERC2P10	-	HERC2 pseudogene 10	pseudo
162642	chr3	48835601	48835800	+	0	NA	intron (NM_004157, intron 1 of 10)	AluSz|SINE|Alu	12174	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
194596	chr6	33452251	33452350	+	0	NA	3' UTR (NM_001130066, exon 18 of 18)	3' UTR (NM_001130066, exon 18 of 18)	-2276	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
230175	chr9	127784511	127785600	+	0	NA	promoter-TSS (NM_001261)	promoter-TSS (NM_001261)	-778	NR_039767	100616250		NR_039767	ENSG00000283863	MIR3960	-	microRNA 3960	ncRNA
29699	chr10	72060801	72062060	+	0	NA	3' UTR (NM_001244950, exon 11 of 11)	3' UTR (NM_001244950, exon 11 of 11)	27121	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
76325	chr15	74399621	74400500	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	11372	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
77083	chr15	78907521	78908300	+	0	NA	Intergenic	LTR50|LTR|ERVL	34921	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
193058	chr6	28658971	28659130	+	0	NA	Intergenic	Intergenic	-4575	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
67287	chr14	69395121	69395600	+	0	NA	intron (NM_004450, intron 1 of 3)	intron (NM_004450, intron 1 of 3)	2939	NM_004450	2079		NM_004450	ENSG00000100632	ERH	DROER	ERH mRNA splicing and mitosis factor	protein-coding
204646	chr7	5419951	5421950	+	0	NA	intron (NM_001080495, intron 2 of 29)	CpG	2596	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
175617	chr4	76042621	76043480	+	0	NA	intron (NM_001377181, intron 1 of 5)	LTR12C|LTR|ERV1	-6980	NM_005409	6373		NM_005409	ENSG00000169248	CXCL11	H174|I-TAC|IP-9|IP9|SCYB11|SCYB9B|b-R1	C-X-C motif chemokine ligand 11	protein-coding
52471	chr12	55965121	55965380	+	0	NA	intron (NM_001200054, intron 1 of 10)	intron (NM_001200054, intron 1 of 10)	792	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
2867	chr1	11338501	11338700	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	65402	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
221410	chr8	123534421	123535430	+	0	NA	intron (NM_001242463, intron 1 of 6)	intron (NM_001242463, intron 1 of 6)	-2782	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
104140	chr17	80381101	80381300	+	0	NA	intron (NM_001256071, intron 56 of 67)	intron (NM_001256071, intron 56 of 67)	-33967	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
80096	chr16	2011271	2011430	+	0	NA	Intergenic	AluY|SINE|Alu	-1529	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
199805	chr6	127341451	127341930	+	0	NA	intron (NM_018479, intron 1 of 4)	intron (NM_018479, intron 1 of 4)	717	NM_001139510	55862		NM_018479	ENSG00000093144	ECHDC1	HEL-S-76|MMCD|dJ351K20.2	ethylmalonyl-CoA decarboxylase 1	protein-coding
81798	chr16	11539751	11540400	+	0	NA	Intergenic	Intergenic	-12828	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
222693	chr8	141272301	141272630	+	0	NA	intron (NM_001286646, intron 1 of 8)	L2|LINE|L2	17898	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
118457	chr19	35871971	35872330	+	0	NA	intron (NM_001024807, intron 6 of 16)	intron (NM_001024807, intron 6 of 16)	3576	NM_001024807	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
139154	chr2	219155121	219155750	+	0	NA	intron (NR_165304, intron 3 of 8)	intron (NR_165304, intron 3 of 8)	5120	NM_001377498	79840		NM_024782	ENSG00000187736	NHEJ1	XLF	non-homologous end joining factor 1	protein-coding
159176	chr3	12823001	12823330	+	0	NA	intron (NM_012298, intron 9 of 12)	L1MC4|LINE|L1	17285	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
164788	chr3	69280771	69281130	+	0	NA	intron (NM_015123, intron 5 of 22)	AluSp|SINE|Alu	105138	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
189047	chr5	169805421	169805880	+	0	NA	intron (NR_156756, intron 26 of 52)	intron (NR_156756, intron 26 of 52)	168375	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
212448	chr7	128408421	128408700	+	0	NA	intron (NM_183243, intron 1 of 14)	intron (NM_183243, intron 1 of 14)	1422	NM_001142576	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
2565	chr1	9785471	9785630	+	0	NA	intron (NM_014944, intron 1 of 17)	MER20|DNA|hAT-Charlie	38415	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
207972	chr7	55308471	55310700	+	0	NA	Intergenic	Intergenic	-53950	NR_110426	102725541		NR_110426		ELDR	Fabl|LINC01156	EGFR long non-coding downstream RNA	ncRNA
59736	chr13	29901851	29903030	+	0	NA	Intergenic	Intergenic	-14035	NR_046510	100874059		NR_046510	ENSG00000224329	LINC00297	NCRNA00297	long intergenic non-protein coding RNA 297	ncRNA
61503	chr13	52655851	52656150	+	0	NA	intron (NM_006704, intron 2 of 12)	intron (NM_006704, intron 2 of 12)	3164	NM_001130912	10910		NM_006704	ENSG00000165416	SUGT1	SGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein-coding
216055	chr8	10052651	10052950	+	0	NA	Intergenic	Intergenic	-1492	NM_001135670	4482		NM_012331	ENSG00000175806	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
16442	chr1	154575071	154575300	+	0	NA	intron (NM_000748, intron 5 of 5)	L2c|LINE|L2	7407	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
39761	chr11	61895821	61896250	+	0	NA	Intergenic	Intergenic	-4490	NM_021727	3995		NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
226335	chr9	69192971	69193350	+	0	NA	intron (NM_001369871, intron 3 of 24)	AluJb|SINE|Alu	-11851	NM_001170415	9414		NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|FHCA1|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
62535	chr13	99578771	99578930	+	0	NA	intron (NR_126390, intron 2 of 3)	intron (NR_126390, intron 2 of 3)	1738	NR_126390	104355149		NR_126390		LINC01039	-	long intergenic non-protein coding RNA 1039	ncRNA
86853	chr16	67933021	67934200	+	0	NA	TTS (NM_002801)	TTS (NM_002801)	-1748	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
131245	chr2	95994971	95995330	+	0	NA	Intergenic	Intergenic	-3326	NM_001310154	400986		NM_001010914	ENSG00000174501	ANKRD36C	-	ankyrin repeat domain 36C	protein-coding
102177	chr17	75144021	75144600	+	0	NA	intron (NM_001002032, intron 3 of 3)	AluJo|SINE|Alu	8983	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
194568	chr6	33409371	33411490	+	0	NA	promoter-TSS (NR_027692).2	promoter-TSS (NR_027692).2	-584	NR_027692	5252		NM_002636	ENSG00000112511	PHF1	MTF2L2|PCL1|PHF2|TDRD19C|hPHF1	PHD finger protein 1	protein-coding
34704	chr10	133442351	133442830	+	0	NA	Intergenic	MIR3|SINE|MIR	-11338	NR_149718	619207		NM_001033584	ENSG00000214279	SCART1	-	scavenger receptor family member expressed on T cells 1	protein-coding
232179	chr9	134179971	134180350	+	0	NA	Intergenic	Intergenic	-15596	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
170888	chr3	193594921	193595180	+	0	NA	intron (NM_130832, intron 1 of 28)	intron (NM_130832, intron 1 of 28)	1842	NM_001354664	4976		NM_015560	ENSG00000198836	OPA1	BERHS|MGM1|MTDPS14|NPG|NTG|largeG	OPA1 mitochondrial dynamin like GTPase	protein-coding
151362	chr21	45815651	45815980	+	0	NA	intron (NM_001348243, intron 3 of 15)	(GTGAGTG)n|Simple_repeat|Simple_repeat	20604	NR_038876	100129027		NR_038876		PCBP3-AS1	-	PCBP3 antisense RNA 1	ncRNA
177094	chr4	108070701	108071180	+	0	NA	intron (NM_016269, intron 8 of 11)	intron (NM_016269, intron 8 of 11)	66276	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
17098	chr1	156145601	156146600	+	0	NA	Intergenic	AluJb|SINE|Alu	-3844	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
121434	chr19	47027271	47027650	+	0	NA	intron (NM_002517, intron 3 of 11)	intron (NM_002517, intron 3 of 11)	7623	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
153815	chr22	29722351	29722650	+	0	NA	intron (NM_182527, intron 1 of 4)	intron (NM_182527, intron 1 of 4)	2497	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
113895	chr19	10681201	10682050	+	0	NA	intron (NM_153464, intron 11 of 17)	intron (NM_153464, intron 11 of 17)	-19814	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
142933	chr20	18578751	18578850	+	0	NA	Intergenic	MIRb|SINE|MIR	-9254	NM_001318043	92675		NM_080820	ENSG00000125821	DTD1	C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68	D-aminoacyl-tRNA deacylase 1	protein-coding
137274	chr2	195368151	195368980	+	0	NA	Intergenic	Intergenic	-288393	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
63059	chr13	113129821	113130300	+	0	NA	promoter-TSS (NR_126424)	promoter-TSS (NR_126424)	-14	NR_126424	104413892		NR_126424		F10-AS1	-	F10 antisense RNA 1	ncRNA
99918	chr17	56960101	56961280	+	0	NA	intron (NM_004645, intron 1 of 6)	intron (NM_004645, intron 1 of 6)	360	NM_004645	8161		NM_004645	ENSG00000121058	COIL	CLN80|p80-coilin	coilin	protein-coding
215906	chr8	8150001	8150600	+	0	NA	intron (NR_147089, intron 2 of 3)	intron (NR_147089, intron 2 of 3)	-61211	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
88474	chr16	85057401	85058000	+	0	NA	intron (NM_001286566, intron 1 of 11)	intron (NM_001286566, intron 1 of 11)	-5512	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
18429	chr1	161466501	161466700	+	0	NA	Intergenic	CpG	-38857	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
46196	chr11	123456221	123456480	+	0	NA	intron (NM_001367421, intron 2 of 20)	MIR3|SINE|MIR	26081	NM_001354837	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
225187	chr9	34039371	34039530	+	0	NA	intron (NM_001370059, intron 1 of 28)	SVA_C|Retroposon|SVA	9437	NM_001370064	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
237077	chrX	103681971	103682430	+	0	NA	intron (NM_001142419, intron 2 of 3)	L1ME3G|LINE|L1	4499	NM_012286	9643		NM_012286	ENSG00000123562	MORF4L2	MORFL2|MRGX	mortality factor 4 like 2	protein-coding
107079	chr18	34978801	34980080	+	0	NA	intron (NM_001143827, intron 1 of 7)	intron (NM_001143827, intron 1 of 7)	1072	NM_001143827	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
1372	chr1	2521821	2522080	+	0	NA	intron (NM_018216, intron 1 of 18).2	intron (NM_018216, intron 1 of 18).2	4646	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
215656	chr8	434101	434300	+	0	NA	intron (NM_183420, intron 4 of 9)	intron (NM_183420, intron 4 of 9)	27242	NM_183420	26260		NM_012173	ENSG00000147364	FBXO25	FBX25	F-box protein 25	protein-coding
7700	chr1	35947421	35947880	+	0	NA	intron (NM_177422, intron 2 of 16)	intron (NM_177422, intron 2 of 16)	16545	NM_177422	192669		NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
223827	chr8	144901001	144903400	+	0	NA	promoter-TSS (NM_001363099)	promoter-TSS (NM_001363099)	-23	NM_001363105	58500		NM_021061	ENSG00000196150	ZNF250	ZFP647|ZNF647	zinc finger protein 250	protein-coding
115150	chr19	14400951	14401900	+	0	NA	exon (NM_078481, exon 10 of 20)	exon (NM_078481, exon 10 of 20)	17916	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
75874	chr15	69718371	69719980	+	0	NA	Intergenic	Intergenic	-116059	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
200671	chr6	137215901	137216100	+	0	NA	intron (NM_001363526, intron 1 of 7)	AluJb|SINE|Alu	3196	NM_001363526	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
188751	chr5	157566901	157567380	+	0	NA	intron (NM_033274, intron 2 of 22)	intron (NM_033274, intron 2 of 22)	8635	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
165014	chr3	71388901	71389300	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-84329	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
98785	chr17	48142721	48142980	+	0	NA	intron (NM_001075099, intron 11 of 12)	AluJo|SINE|Alu	13661	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
25492	chr10	7030001	7031030	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	156269	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
72466	chr15	32440171	32440700	+	0	NA	intron (NR_135833, intron 1 of 1).2	intron (NR_135833, intron 1 of 1).2	-4692	NR_157596	102725021		NR_157593		ARHGAP11B-DT	-	ARHGAP11B divergent transcript	ncRNA
156526	chr22	41415871	41416430	+	0	NA	Intergenic	AluY|SINE|Alu	30651	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
76095	chr15	72492851	72493580	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	18885	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
26368	chr10	16438871	16439030	+	0	NA	intron (NM_001261837, intron 2 of 4)	intron (NM_001261837, intron 2 of 4)	2007	NM_001001484	9317		NM_030664	ENSG00000165983	PTER	HPHRP|RPR-1	phosphotriesterase related	protein-coding
40619	chr11	64690151	64690780	+	0	NA	exon (NM_001376262, exon 5 of 23)	exon (NM_001376262, exon 5 of 23)	32732	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
30687	chr10	80520601	80521000	+	0	NA	3' UTR (NM_001351267, exon 11 of 11)	3' UTR (NM_001351267, exon 11 of 11)	15142	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
177406	chr4	112283951	112284400	+	0	NA	intron (NM_052864, intron 1 of 1)	intron (NM_052864, intron 1 of 1)	1729	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
42904	chr11	73379971	73381100	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	3867	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
68355	chr14	77711351	77711750	+	0	NA	intron (NR_052025, intron 3 of 4)	AluJb|SINE|Alu	3447	NM_031210	81892		NM_031210	ENSG00000119705	SLIRP	C14orf156|DC50|PD04872	SRA stem-loop interacting RNA binding protein	protein-coding
134677	chr2	144476051	144476150	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-43514	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
90054	chr16	89934171	89934980	+	0	NA	intron (NM_001197181, intron 3 of 3)	intron (NM_001197181, intron 3 of 3)	11233	NM_006086	10381		NM_006086	ENSG00000258947	TUBB3	CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4	tubulin beta 3 class III	protein-coding
204679	chr7	5497171	5499330	+	0	NA	intron (NM_024963, intron 3 of 4)	AluY|SINE|Alu	-2333	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
218573	chr8	55774821	55775300	+	0	NA	intron (NM_001363184, intron 1 of 11)	AluJo|SINE|Alu	1614	NM_024831	96764		NM_024831	ENSG00000137574	TGS1	NCOA6IP|PIMT|PIPMT	trimethylguanosine synthase 1	protein-coding
88732	chr16	86045171	86045830	+	0	NA	Intergenic	Intergenic	127153	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
57261	chr12	121585051	121585350	+	0	NA	Intergenic	AluSx|SINE|Alu	-4177	NM_032590	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
120842	chr19	45513021	45513530	+	0	NA	intron (NM_003370, intron 1 of 12)	AluJb|SINE|Alu	5796	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
62114	chr13	95403851	95404600	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-29374	NM_001160100	9071		NM_006984	ENSG00000134873	CLDN10	CPETRL3|HELIX|OSP-L|OSPL	claudin 10	protein-coding
76060	chr15	72341301	72341850	+	0	NA	3' UTR (NM_001318825, exon 14 of 14)	3' UTR (NM_001318825, exon 14 of 14)	-21418	NM_052840	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
90542	chr17	1495351	1495800	+	0	NA	3' UTR (NM_001135642, exon 14 of 14)	3' UTR (NM_001135642, exon 14 of 14)	-2889	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
37236	chr11	14519761	14521380	+	0	NA	promoter-TSS (NM_001143937)	promoter-TSS (NM_001143937)	-125	NM_001143937	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
222288	chr8	133456751	133457050	+	0	NA	3' UTR (NM_003033, exon 9 of 9)	3' UTR (NM_003033, exon 9 of 9)	114987	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
238521	chrX	153689671	153690130	+	0	NA	intron (NM_001142806, intron 1 of 12)	intron (NM_001142806, intron 1 of 12)	389	NM_001142806	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
36433	chr11	4610051	4610780	+	0	NA	Intergenic	Intergenic	-2184	NM_018073	55128		NM_018073	ENSG00000167333	TRIM68	GC109|RNF137|SS-56|SS56	tripartite motif containing 68	protein-coding
223321	chr8	143819871	143820030	+	0	NA	intron (NM_001362897, intron 5 of 11)	intron (NM_001362897, intron 5 of 11)	-4177	NM_015356	23513		NM_015356	ENSG00000180900	SCRIB	CRIB1|SCRB1|SCRIB1|Vartul|oSCRIB	scribble planar cell polarity protein	protein-coding
80326	chr16	2439901	2440730	+	0	NA	intron (NM_001323538, intron 7 of 15)	intron (NM_001323538, intron 7 of 15)	-5077	NR_106825	102465459		NR_106825	ENSG00000283180	MIR6767	hsa-mir-6767	microRNA 6767	ncRNA
111875	chr19	4651921	4652380	+	0	NA	exon (NM_001167942, exon 2 of 2)	exon (NM_001167942, exon 2 of 2)	12133	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
17964	chr1	160437421	160438750	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	37521	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
95496	chr17	36263871	36264200	+	0	NA	intron (NM_001291463, intron 1 of 13).13	intron (NM_001291463, intron 1 of 13).13	478	NM_001291465	101060389		NM_001123390	ENSG00000274419	TBC1D3D	PRC17|TBC1D3|TBC1D3A|TBC1D3H	TBC1 domain family member 3D	protein-coding
111340	chr19	3646551	3646650	+	0	NA	intron (NM_001300849, intron 10 of 16)	intron (NM_001300849, intron 10 of 16)	-19785	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
56238	chr12	111846801	111847200	+	0	NA	intron (NM_001371479, intron 1 of 15)	Tigger7|DNA|TcMar-Tigger	-3995	NR_015404	51275		NR_015404	ENSG00000234608	MAPKAPK5-AS1	C12orf47|MAAS	MAPKAPK5 antisense RNA 1	ncRNA
94954	chr17	32107351	32107850	+	0	NA	Intergenic	Intergenic	-34854	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
66824	chr14	64760071	64760830	+	0	NA	intron (NM_001355436, intron 32 of 35)	intron (NM_001355436, intron 32 of 35)	25236	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
195163	chr6	35764371	35764530	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-12148	NM_207409	389383		NM_207409	ENSG00000196748	CLPSL2	AAAL3045|C6orf126|UNQ3045|dJ510O8.5	colipase like 2	protein-coding
132968	chr2	111475801	111476900	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	18811	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
71664	chr14	106883151	106883510	+	0	NA	Intergenic	TAR1|Satellite|telo	-32331	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
13286	chr1	112954821	112958130	+	0	NA	promoter-TSS (NR_103744)	promoter-TSS (NR_103744)	60	NR_103744	100506392		NR_103743	ENSG00000226419	SLC16A1-AS1	-	SLC16A1 antisense RNA 1	ncRNA
146849	chr20	51431071	51431750	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	21567	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
26677	chr10	22621771	22621930	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	92258	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
56989	chr12	120558651	120558950	+	0	NA	intron (NM_001330474, intron 6 of 16)	AluSx1|SINE|Alu	22598	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
117844	chr19	31355121	31355780	+	0	NA	Intergenic	Intergenic	-6014	NR_138035	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
237226	chrX	109727371	109727730	+	0	NA	intron (NM_022977, intron 1 of 16)	intron (NM_022977, intron 1 of 16)	-4961	NR_158569	105373311		NR_158569		LOC105373311	-	uncharacterized LOC105373311	ncRNA
176161	chr4	83251951	83252050	+	0	NA	Intergenic	LTR41B|LTR|ERVL	32798	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
13073	chr1	111505571	111506200	+	0	NA	intron (NM_001081976, intron 1 of 5)	intron (NM_001081976, intron 1 of 5)	-2252	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
173045	chr4	4995171	4995330	+	0	NA	Intergenic	Intergenic	24208	NM_018659	54360		NM_018659	ENSG00000170891	CYTL1	C17|C4orf4	cytokine like 1	protein-coding
27331	chr10	30533401	30533930	+	0	NA	Intergenic	Intergenic	96088	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
105278	chr17	82462871	82463180	+	0	NA	intron (NM_001083608, intron 2 of 9)	MER5A1|DNA|hAT-Charlie	4284	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
57592	chr12	122417351	122417850	+	0	NA	intron (NM_001247997, intron 1 of 25)	AluY|SINE|Alu	4969	NM_001247997	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
20546	chr1	198702051	198702680	+	0	NA	intron (NM_002838, intron 5 of 32)	intron (NM_002838, intron 5 of 32)	63325	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
182256	chr5	57187671	57188550	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluSz|SINE|Alu	12662	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
135751	chr2	169574771	169574930	+	0	NA	promoter-TSS (NM_001281476)	promoter-TSS (NM_001281476)	-929	NM_001322049	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
10210	chr1	62319071	62319230	+	0	NA	5' UTR (NM_181712, exon 1 of 10)	5' UTR (NM_181712, exon 1 of 10)	284	NM_181712	163782		NM_181712	ENSG00000132854	KANK4	ANKRD38|dJ1078M7.1	KN motif and ankyrin repeat domains 4	protein-coding
64163	chr14	22916721	22917330	+	0	NA	intron (NM_001352764, intron 1 of 14)	AluSp|SINE|Alu	2124	NM_001352765	55147		NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding
35834	chr11	2297121	2298050	+	0	NA	non-coding (NR_138249, exon 3 of 3)	non-coding (NR_138249, exon 3 of 3)	4333	NM_001329958	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
4566	chr1	22054951	22056030	+	0	NA	intron (NM_044472, intron 1 of 5)	intron (NM_044472, intron 1 of 5)	2781	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
219919	chr8	86341951	86343600	+	0	NA	5' UTR (NM_007013, exon 1 of 25)	5' UTR (NM_007013, exon 1 of 25)	228	NM_007013	11059		NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
132996	chr2	111533601	111534130	+	0	NA	Intergenic	Intergenic	-38704	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
164294	chr3	57600871	57601030	+	0	NA	TTS (NR_132369)	TTS (NR_132369)	3161	NR_132369	106144532		NR_132369	ENSG00000272146	ARF4-AS1	-	ARF4 antisense RNA 1	ncRNA
235032	chrX	40065451	40066130	+	0	NA	intron (NM_001123384, intron 5 of 13)	intron (NM_001123384, intron 5 of 13)	32168	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
233708	chrX	1268621	1269200	+	0	NA	promoter-TSS (NM_001161531)	promoter-TSS (NM_001161531)	96	NM_001379166	1438		NM_006140	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMCSFR-alpha|GMR|GMR-alpha|SMDP4|alphaGMR	colony stimulating factor 2 receptor subunit alpha	protein-coding
77756	chr15	85756901	85757500	+	0	NA	intron (NR_120366, intron 3 of 5)	intron (NR_120366, intron 3 of 5)	1525	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
73554	chr15	44286271	44286430	+	0	NA	Intergenic	AluY|SINE|Alu	-2369	NR_157849	113201		NM_138423	ENSG00000166734	GOLM2	CASC4|H63	golgi membrane protein 2	protein-coding
210592	chr7	100374621	100375150	+	0	NA	intron (NM_178273, intron 2 of 4)	intron (NM_178273, intron 2 of 4)	1398	NM_013439	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
161463	chr3	42218501	42218900	+	0	NA	intron (NM_001042646, intron 14 of 15)	intron (NM_001042646, intron 14 of 15)	45247	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
122318	chr19	49131521	49131830	+	0	NA	intron (NR_103842, intron 7 of 28)	AluSx3|SINE|Alu	12131	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
97377	chr17	43322251	43323830	+	0	NA	Intergenic	MER96B|DNA|hAT-Tip100	-22809	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
22645	chr1	223724321	223724880	+	0	NA	intron (NM_001748, intron 2 of 20)	intron (NM_001748, intron 2 of 20)	12061	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
18501	chr1	161738571	161739400	+	0	NA	Intergenic	L3|LINE|CR1	-10801	NM_007240	11266		NM_007240	ENSG00000081721	DUSP12	DUSP1|YVH1	dual specificity phosphatase 12	protein-coding
107046	chr18	32135601	32135800	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	43094	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
96631	chr17	40587421	40587880	+	0	NA	Intergenic	L1PB1|LINE|L1	-22178	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
26924	chr10	26474851	26476280	+	0	NA	intron (NM_019043, intron 2 of 14)	MIRb|SINE|MIR	37224	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
73042	chr15	40871401	40871800	+	0	NA	TTS (NM_133639)	TTS (NM_133639)	2634	NM_133639	171177		NM_133639	ENSG00000104140	RHOV	ARHV|CHP|WRCH2	ras homolog family member V	protein-coding
135939	chr2	171927101	171927300	+	0	NA	intron (NR_027862, intron 2 of 9)	L1MB8|LINE|L1	4739	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
217829	chr8	37390471	37390730	+	0	NA	Intergenic	Intergenic	103313	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
205937	chr7	25952551	25953530	+	0	NA	Intergenic	Intergenic	-3054	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
103405	chr17	78182451	78182750	+	0	NA	exon (NM_003258, exon 4 of 7)	exon (NM_003258, exon 4 of 7)	4452	NM_001346663	7083		NM_003258	ENSG00000167900	TK1	TK2	thymidine kinase 1	protein-coding
113722	chr19	10462501	10462900	+	0	NA	intron (NM_001111307, intron 13 of 14)	intron (NM_001111307, intron 13 of 14)	9768	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
23700	chr1	231611901	231612130	+	0	NA	promoter-TSS (NR_034037)	promoter-TSS (NR_034037)	75	NR_034037	100287814		NR_034037	ENSG00000229228	LINC00582	SMILO	long intergenic non-protein coding RNA 582	ncRNA
14658	chr1	145718021	145718280	+	0	NA	Intergenic	Intergenic	-1349	NR_103845	11126		NM_007053	ENSG00000117281	CD160	BY55|NK1|NK28	CD160 molecule	protein-coding
97668	chr17	44215221	44215630	+	0	NA	intron (NM_001076683, intron 5 of 19)	intron (NM_001076683, intron 5 of 19)	4250	NM_001076684	7343		NM_014233	ENSG00000108312	UBTF	CONDBA|NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor	protein-coding
184424	chr5	98931251	98931350	+	0	NA	TTS (NR_036530)	TTS (NR_036530)	2166	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
165881	chr3	106177971	106178280	+	0	NA	Intergenic	MLT2A2|LTR|ERVL	-308724	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
50517	chr12	47827351	47827850	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7697	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
159092	chr3	12471221	12471550	+	0	NA	Intergenic	Intergenic	-13047	NM_001321277	80746		NM_025265	ENSG00000154743	TSEN2	PCH2B|SEN2|SEN2L	tRNA splicing endonuclease subunit 2	protein-coding
119012	chr19	38902971	38903580	+	0	NA	intron (NR_040515, intron 1 of 4).2	intron (NR_040515, intron 1 of 4).2	3306	NR_040515	4793		NM_002503	ENSG00000104825	NFKBIB	IKBB|TRIP9	NFKB inhibitor beta	protein-coding
44243	chr11	97671221	97671300	+	0	NA	Intergenic	AluYf1|SINE|Alu	1162835	NR_135097	105369443		NR_135097	ENSG00000256684	LINC02737	-	long intergenic non-protein coding RNA 2737	ncRNA
186726	chr5	139273521	139274830	+	0	NA	intron (NM_199189, intron 1 of 17)	intron (NM_199189, intron 1 of 17)	423	NM_199189	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
163121	chr3	50126371	50126530	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-25462	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
19255	chr1	172679171	172679550	+	0	NA	Intergenic	MER50|LTR|ERV1	20257	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
68406	chr14	80987301	80987900	+	0	NA	intron (NM_001142626, intron 1 of 8)	intron (NM_001142626, intron 1 of 8)	31979	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
232146	chr9	134049201	134049400	+	0	NA	intron (NM_007371, intron 5 of 11)	intron (NM_007371, intron 5 of 11)	-4990	NR_135126	100130548		NR_135126	ENSG00000235138	LOC100130548	-	uncharacterized LOC100130548	ncRNA
65423	chr14	50861601	50861800	+	0	NA	Intergenic	Intergenic	-10353	NM_001206673	145447		NM_181533	ENSG00000131969	ABHD12B	BEM46L3|C14orf29|c14_5314	abhydrolase domain containing 12B	protein-coding
126503	chr2	28408821	28409800	+	0	NA	intron (NM_005253, intron 3 of 3)	intron (NM_005253, intron 3 of 3)	-14638	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
17328	chr1	156473271	156474180	+	0	NA	intron (NM_001271629, intron 8 of 10)	intron (NM_001271629, intron 8 of 10)	16962	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
132640	chr2	108721171	108721330	+	0	NA	intron (NM_006267, intron 1 of 28)	intron (NM_006267, intron 1 of 28)	1768	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
129700	chr2	70655201	70655850	+	0	NA	Intergenic	AluSp|SINE|Alu	-101699	NM_003236	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
227594	chr9	92666971	92667330	+	0	NA	intron (NM_022755, intron 1 of 12)	intron (NM_022755, intron 1 of 12)	2981	NM_022755	64768		NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
41081	chr11	65514121	65514380	+	0	NA	Intergenic	AluY|SINE|Alu	-6818	NR_145459	109136579		NR_145459	ENSG00000289740	TALAM1	-	TALAM1 transcript, MALAT1 antisense RNA	ncRNA
35017	chr11	551501	551780	+	0	NA	intron (NM_198075, intron 9 of 13)	intron (NM_198075, intron 9 of 13)	-7622	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
65375	chr14	50667071	50668950	+	0	NA	5' UTR (NM_021818, exon 1 of 5)	5' UTR (NM_021818, exon 1 of 5)	296	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
45089	chr11	117081651	117082500	+	0	NA	intron (NM_001281748, intron 1 of 24)	L1MB8|LINE|L1	16353	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
179860	chr5	542671	543030	+	0	NA	Intergenic	Intergenic	-6968	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
159149	chr3	12706451	12706950	+	0	NA	Intergenic	LTR16|LTR|ERVL	-42583	NM_002880	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
218240	chr8	42139671	42141100	+	0	NA	Intergenic	CpG	-12561	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
32564	chr10	103394401	103394600	+	0	NA	promoter-TSS (NR_031707)	promoter-TSS (NR_031707)	-99	NR_031707	100302174		NR_031707	ENSG00000283867	MIR1307	MIRN1307|hsa-mir-1307|mir-1307	microRNA 1307	ncRNA
9813	chr1	53845851	53846750	+	0	NA	Intergenic	AluSx|SINE|Alu	-8004	NM_001168551	55706		NM_018087	ENSG00000058804	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
77552	chr15	84760451	84760750	+	0	NA	intron (NM_014630, intron 1 of 10)	L2a|LINE|L2	12008	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
167646	chr3	129614621	129615130	+	0	NA	Intergenic	L2c|LINE|L2	-8199	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
152252	chr22	20228851	20229150	+	0	NA	Intergenic	Intergenic	20211	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
118400	chr19	35742001	35743130	+	0	NA	promoter-TSS (NR_144339)	promoter-TSS (NR_144339)	-113	NM_024660	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
93500	chr17	18988651	18988950	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	15964	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
75364	chr15	65607821	65608080	+	0	NA	intron (NR_045901, intron 1 of 10)	Tigger8|DNA|TcMar-Tigger	3181	NM_001207058	81556		NM_030800	ENSG00000138614	INTS14	C15orf44|VWA9	integrator complex subunit 14	protein-coding
48975	chr12	12999821	13000800	+	0	NA	promoter-TSS (NR_002774)	promoter-TSS (NR_002774)	-45	NM_015987	50865		NM_015987	ENSG00000013583	HEBP1	HBP|HEBP	heme binding protein 1	protein-coding
183651	chr5	80255291	80257300	+	0	NA	promoter-TSS (NR_126061)	promoter-TSS (NR_126061)	-247	NR_126060	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
175910	chr4	80183481	80185700	+	0	NA	promoter-TSS (NM_020226)	promoter-TSS (NM_020226)	-680	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
39485	chr11	61012071	61012530	+	0	NA	intron (NM_006725, intron 6 of 12)	intron (NM_006725, intron 6 of 12)	40620	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
210796	chr7	100851751	100854300	+	0	NA	promoter-TSS (NR_146550)	promoter-TSS (NR_146550)	306	NM_001267812	56996		NM_020246	ENSG00000146828	SLC12A9	CCC6|CIP1|WO3.3|hCCC6	solute carrier family 12 member 9	protein-coding
77044	chr15	78808571	78809250	+	0	NA	intron (NM_014272, intron 1 of 23)	intron (NM_014272, intron 1 of 23)	2554	NM_014272	11173		NM_014272	ENSG00000136378	ADAMTS7	ADAM-TS 7|ADAM-TS7|ADAMTS-7	ADAM metallopeptidase with thrombospondin type 1 motif 7	protein-coding
239181	chrY	12552601	12553000	+	0	NA	Intergenic	Intergenic	-109567	NR_001545	64595		NR_001545	ENSG00000114374	TTTY15	NCRNA00138	testis expressed transcript, Y-linked 15	ncRNA
203245	chr6	169186501	169186900	+	0	NA	Intergenic	Intergenic	-3960	NR_125863	101929504		NR_125863	ENSG00000261039	LINC02544	-	long intergenic non-protein coding RNA 2544	ncRNA
61222	chr13	49584801	49586250	+	0	NA	promoter-TSS (NR_148016)	promoter-TSS (NR_148016)	33	NM_001352500	55213		NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RDEOA	RCC1 and BTB domain containing protein 1	protein-coding
27639	chr10	32956221	32956730	+	0	NA	intron (NM_002211, intron 1 of 15)	AluJb|SINE|Alu	1419	NM_133376	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
235298	chrX	42474071	42474430	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	303913	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
183901	chr5	87380301	87380900	+	0	NA	intron (NM_022650, intron 20 of 24)	intron (NM_022650, intron 20 of 24)	32304	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
46013	chr11	121634471	121635100	+	0	NA	Intergenic	Intergenic	-152996	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
113526	chr19	10121901	10122300	+	0	NA	Intergenic	Intergenic	-2201	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
206833	chr7	37332301	37332700	+	0	NA	intron (NM_014800, intron 2 of 21)	L2c|LINE|L2	21168	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
192243	chr6	20173821	20174300	+	0	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	38409	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
148507	chr20	64082221	64082700	+	0	NA	TTS (NM_001007125)	TTS (NM_001007125)	1899	NM_001007125	198437		NM_001007125	ENSG00000171695	LKAAEAR1	C20orf201	LKAAEAR motif containing 1	protein-coding
16940	chr1	155913821	155914380	+	0	NA	3' UTR (NM_014949, exon 14 of 14)	3' UTR (NM_014949, exon 14 of 14)	-2751	NM_001256820	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
181730	chr5	50688671	50689930	+	0	NA	intron (NM_024615, intron 2 of 25)	MLT1I|LTR|ERVL-MaLR	21886	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
134699	chr2	144495251	144496050	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-23964	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
204697	chr7	5515501	5516250	+	0	NA	intron (NR_126168, intron 1 of 3)	AluY|SINE|Alu	2021	NR_126168	221946		NR_126168		LOC221946	-	uncharacterized LOC221946	ncRNA
221829	chr8	128076371	128077200	+	0	NA	intron (NR_003367, intron 6 of 8)	intron (NR_003367, intron 6 of 8)	27633	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
29021	chr10	63632351	63632450	+	0	NA	Intergenic	Intergenic	-110510	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
40311	chr11	63887001	63887580	+	0	NA	intron (NM_004954, intron 1 of 16)	MIRc|SINE|MIR	-1247	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
192327	chr6	22053671	22053830	+	0	NA	intron (NR_015410, intron 7 of 11)	intron (NR_015410, intron 7 of 11)	93443	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
215869	chr8	7610951	7611950	+	0	NA	Intergenic	CpG	-37052	NR_046343								
196002	chr6	42003471	42004530	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	44894	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
92394	chr17	8294021	8294530	+	0	NA	intron (NM_001320870, intron 1 of 4)	intron (NM_001320870, intron 1 of 4)	1068	NR_135484	399512		NM_201520	ENSG00000125434	SLC25A35	-	solute carrier family 25 member 35	protein-coding
3474	chr1	15963851	15964780	+	0	NA	intron (NM_001324138, intron 2 of 14)	L1ME3F|LINE|L1	11786	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
194547	chr6	33322601	33324280	+	0	NA	promoter-TSS (NM_001141970).3	promoter-TSS (NM_001141970).3	-424	NM_001254717	1616		NM_001350	ENSG00000204209	DAXX	BING2|DAP6|EAP1|SMIM40	death domain associated protein	protein-coding
211594	chr7	105807751	105808050	+	0	NA	intron (NM_001385596, intron 2 of 11)	MLT1H2|LTR|ERVL-MaLR	68685	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
186522	chr5	138357301	138357500	+	0	NA	intron (NM_016604, intron 1 of 23)	AluJb|SINE|Alu	4715	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
56055	chr12	110559101	110559500	+	0	NA	intron (NM_139283, intron 1 of 5)	AluJo|SINE|Alu	24018	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
33305	chr10	114823421	114823680	+	0	NA	intron (NM_001135051, intron 1 of 16)	AluSx1|SINE|Alu	1770	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
60172	chr13	40190701	40191400	+	0	NA	Intergenic	Intergenic	9241	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
167990	chr3	136744621	136744880	+	0	NA	intron (NM_005862, intron 1 of 33)	AluSz6|SINE|Alu	7628	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
159238	chr3	12918851	12918950	+	0	NA	intron (NM_014869, intron 6 of 13)	intron (NM_014869, intron 6 of 13)	-33689	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
172620	chr4	2516971	2517200	+	0	NA	Intergenic	AluSz|SINE|Alu	-18290	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
31853	chr10	99845801	99846400	+	0	NA	intron (NM_000392, intron 29 of 31)	intron (NM_000392, intron 29 of 31)	63460	NM_000392	1244		NM_000392	ENSG00000023839	ABCC2	ABC30|CMOAT|DJS|MRP2|cMRP	ATP binding cassette subfamily C member 2	protein-coding
15882	chr1	151507571	151508380	+	0	NA	Intergenic	Intergenic	-3412	NM_020770	57530		NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
212467	chr7	128475421	128475680	+	0	NA	Intergenic	AluSz|SINE|Alu	-1198	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
189068	chr5	170268871	170269200	+	0	NA	intron (NM_005565, intron 7 of 20)	intron (NM_005565, intron 7 of 20)	28742	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
54683	chr12	93407001	93407700	+	0	NA	3' UTR (NM_199040, exon 5 of 5)	3' UTR (NM_199040, exon 5 of 5)	28772	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
158928	chr3	10024801	10025000	+	0	NA	intron (NR_002786, intron 1 of 2)	intron (NR_002786, intron 1 of 2)	1236	NR_002786	152302		NR_002786	ENSG00000186162	CIDECP1	CICE|CIDECP	CIDEC pseudogene 1	pseudo
141531	chr2	241297771	241297930	+	0	NA	intron (NM_005336, intron 1 of 27)	AluSx|SINE|Alu	-17337	NM_006155	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
209685	chr7	80312171	80312530	+	0	NA	Intergenic	Intergenic	62089	NR_110075	101927269		NR_110075		LOC101927269	-	uncharacterized LOC101927269	ncRNA
115107	chr19	14337201	14337830	+	0	NA	intron (NR_134916, intron 1 of 1)	intron (NR_134916, intron 1 of 1)	3772	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
45437	chr11	118433271	118433430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3142	NM_001197104	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
156722	chr22	41793251	41793550	+	0	NA	intron (NM_152513, intron 26 of 30)	AluSx|SINE|Alu	-7279	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
70000	chr14	100063501	100064000	+	0	NA	intron (NM_001330221, intron 1 of 13)	L1M5|LINE|L1	-1672	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
192570	chr6	25710101	25710300	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	16362	NM_170745	221613		NM_170745	ENSG00000164508	H2AC1	H2AA|H2AFR|HIST1H2AA|HISTH2AA|TH2A|bA317E16.2	H2A clustered histone 1	protein-coding
125986	chr2	25290871	25291800	+	0	NA	intron (NR_135490, intron 3 of 23)	intron (NR_135490, intron 3 of 23)	37386	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
137618	chr2	197306321	197307080	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	4080	NM_153697	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
141816	chr20	346751	347260	+	0	NA	promoter-TSS (NM_024958)	promoter-TSS (NM_024958)	-106	NM_001323684	80023		NM_024958	ENSG00000125841	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
33456	chr10	119046871	119047380	+	0	NA	intron (NM_003750, intron 17 of 21)	AluSg|SINE|Alu	13013	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
575	chr1	1270201	1270500	+	0	NA	intron (NM_194458, intron 1 of 6)	intron (NM_194458, intron 1 of 6)	3504	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
36798	chr11	9565801	9566550	+	0	NA	Intergenic	Intergenic	-7495	NM_003390	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
184209	chr5	95954271	95955080	+	0	NA	intron (NM_012081, intron 1 of 11)	AluY|SINE|Alu	7176	NM_012081	22936		NM_012081	ENSG00000118985	ELL2	MRCCAT1	elongation factor for RNA polymerase II 2	protein-coding
52300	chr12	54723671	54724050	+	0	NA	Intergenic	MER41B|LTR|ERV1	-75495	NM_001300854	117159		NM_053283	ENSG00000161634	DCD	AIDD|DCD-1|DSEP|HCAP|PIF	dermcidin	protein-coding
61714	chr13	74096921	74097380	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	36779	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
219852	chr8	83403451	83403550	+	0	NA	promoter-TSS (NR_122034)	promoter-TSS (NR_122034)	-258	NR_122034	103352670		NR_122034	ENSG00000253898	LINC01419	LVCAT7|PRLH1|TCONS_00014497	long intergenic non-protein coding RNA 1419	ncRNA
91048	chr17	2906821	2907280	+	0	NA	intron (NM_001100398, intron 3 of 23)	MLT1K|LTR|ERVL-MaLR	58845	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
209418	chr7	76353721	76353980	+	0	NA	intron (NM_012479, intron 1 of 1)	AluJb|SINE|Alu	5141	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
194825	chr6	34316871	34317530	+	0	NA	intron (NM_006703, intron 2 of 4)	L2|LINE|L2	-68092	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
90746	chr17	2037221	2038180	+	0	NA	intron (NR_144476, intron 6 of 12)	intron (NR_144476, intron 6 of 12)	-4322	NM_080822	124641		NM_080822	ENSG00000262664	OVCA2	-	OVCA2 serine hydrolase domain containing	protein-coding
236880	chrX	82091951	82092550	+	0	NA	Intergenic	MER4B|LTR|ERV1	890148	NM_003022	6451		NM_003022	ENSG00000131171	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate rich protein like	protein-coding
189096	chr5	170301051	170301450	+	0	NA	Intergenic	Intergenic	-3473	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
34513	chr10	132611121	132611780	+	0	NA	intron (NM_005539, intron 2 of 15)	intron (NM_005539, intron 2 of 15)	-69825	NM_001321042	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
61675	chr13	73989421	73989880	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	144279	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
215735	chr8	1785671	1786450	+	0	NA	3' UTR (NM_018941, exon 3 of 3)	3' UTR (NM_018941, exon 3 of 3)	-15065	NR_037445	100500912		NR_037445	ENSG00000283858	MIR3674	-	microRNA 3674	ncRNA
75928	chr15	70140401	70142000	+	0	NA	Intergenic	L2c|LINE|L2	-43283	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
20308	chr1	197374421	197374880	+	0	NA	intron (NM_201253, intron 5 of 11)	HERVL40-int|LTR|ERVL	106398	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
137485	chr2	197137821	197139100	+	0	NA	intron (NM_153697, intron 3 of 9)	intron (NM_153697, intron 3 of 9)	-59531	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
124173	chr19	56118901	56119590	+	0	NA	intron (NM_001351682, intron 1 of 1)	intron (NM_001351682, intron 1 of 1)	2050	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
148886	chr21	8456851	8456950	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	15754	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
88536	chr16	85427921	85428600	+	0	NA	Intergenic	Intergenic	-121935	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
151530	chr21	46468251	46468550	+	0	NA	intron (NR_046400, intron 3 of 3)	AluJb|SINE|Alu	5929	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
197123	chr6	57352651	57352790	+	0	NA	intron (NM_000947, intron 5 of 13)	intron (NM_000947, intron 5 of 13)	35090	NM_000947	5558		NM_000947	ENSG00000146143	PRIM2	PRIM2A|p58	DNA primase subunit 2	protein-coding
212838	chr7	130577821	130577900	+	0	NA	intron (NM_001290033, intron 9 of 19)	L1PA2|LINE|L1	34407	NR_024086	53844		NR_024086		COPG2IT1	CIT1|COPG2AS|DKFZP761N09121|NCRNA00170	COPG2 imprinted transcript 1	ncRNA
21293	chr1	204454251	204454350	+	0	NA	intron (NM_001377335, intron 14 of 35)	AluY|SINE|Alu	40505	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
4136	chr1	19332801	19333400	+	0	NA	TTS (NR_109848)	TTS (NR_109848)	20774	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
19038	chr1	169691171	169691550	+	0	NA	non-coding (NR_029467, exon 7 of 7)	non-coding (NR_029467, exon 7 of 7)	17497	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
28585	chr10	51879101	51879500	+	0	NA	intron (NM_001098512, intron 4 of 17)	intron (NM_001098512, intron 4 of 17)	-167456	NM_001374781	5592		NM_006258	ENSG00000185532	PRKG1	AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha	protein kinase cGMP-dependent 1	protein-coding
35140	chr11	719451	719880	+	0	NA	intron (NM_022772, intron 4 of 20)	intron (NM_022772, intron 4 of 20)	-12582	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
74900	chr15	63604301	63604850	+	0	NA	Intergenic	Intergenic	-3748	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
127875	chr2	45890571	45891200	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	239210	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
55913	chr12	109739771	109740330	+	0	NA	intron (NR_026662, intron 1 of 2)	intron (NR_026662, intron 1 of 2)	26225	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
226470	chr9	71740921	71741200	+	0	NA	intron (NM_001135820, intron 4 of 22)	intron (NM_001135820, intron 4 of 22)	27453	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
127340	chr2	39112321	39113300	+	0	NA	intron (NM_001382394, intron 1 of 22)	AluSx|SINE|Alu	8241	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
13962	chr1	120395271	120395430	+	0	NA	Intergenic	AluJb|SINE|Alu	-19677	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
202976	chr6	161272251	161272550	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	1661	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
254	chr1	915771	916530	+	0	NA	TTS (NR_026874)	TTS (NR_026874)	3542	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
57796	chr12	123080551	123080850	+	0	NA	promoter-TSS (NR_038290)	promoter-TSS (NR_038290)	-684	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
53594	chr12	68011051	68011500	+	0	NA	intron (NR_104125, intron 3 of 3)	intron (NR_104125, intron 3 of 3)	21830	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
20742	chr1	200971851	200972730	+	0	NA	3' UTR (NM_001252103, exon 34 of 34)	3' UTR (NM_001252103, exon 34 of 34)	43346	NR_147176	647215		NR_147176	ENSG00000293444	MROH3P	C1orf81	maestro heat like repeat family member 3, pseudogene	pseudo
79567	chr16	983501	983700	+	0	NA	intron (NM_014587, intron 1 of 2)	CpG	1830	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
207788	chr7	50229901	50230380	+	0	NA	Intergenic	Intergenic	-73924	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
133025	chr2	111850601	111850980	+	0	NA	exon (NM_022662, exon 14 of 48)	exon (NM_022662, exon 14 of 48)	33403	NM_022662	64682		NM_022662	ENSG00000153107	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
49866	chr12	37144951	37145050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1171774	NM_001308340	144245		NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10 alpha-1,2-glucosyltransferase B	protein-coding
210768	chr7	100693251	100694780	+	0	NA	5' UTR (NM_001375761, exon 1 of 26)	5' UTR (NM_001375761, exon 1 of 26)	235	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
164972	chr3	71297651	71298150	+	0	NA	intron (NR_126463, intron 3 of 4)	AluSx1|SINE|Alu	6871	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
235266	chrX	41759871	41760130	+	0	NA	intron (NM_001126055, intron 3 of 24)	intron (NM_001126055, intron 3 of 24)	35819	NM_080817	27197		NM_080817	ENSG00000171657	GPR82	-	G protein-coupled receptor 82	protein-coding
96339	chr17	40056221	40056480	+	0	NA	Intergenic	Intergenic	-1942	NR_052017	9862		NM_014815	ENSG00000008838	MED24	ARC100|CRSP100|CRSP4|DRIP100|MED5|THRAP4|TRAP100	mediator complex subunit 24	protein-coding
45955	chr11	121417171	121417850	+	0	NA	Intergenic	Intergenic	-34804	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
80113	chr16	2029471	2029830	+	0	NA	exon (NM_004785, exon 2 of 7)	exon (NM_004785, exon 2 of 7)	2748	NM_001130012	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
183378	chr5	77512351	77512450	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-20084	NM_018268	55255		NM_018268	ENSG00000164253	WDR41	MSTP048	WD repeat domain 41	protein-coding
121844	chr19	48190221	48190880	+	0	NA	intron (NM_199341, intron 3 of 3)	MLT1I|LTR|ERVL-MaLR	19870	NM_199341	374920		NM_199341	ENSG00000185453	ZSWIM9	C19orf68	zinc finger SWIM-type containing 9	protein-coding
5460	chr1	25623421	25623700	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	6769	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
139715	chr2	227805621	227806080	+	0	NA	Intergenic	LTR2C|LTR|ERV1	-7992	NM_001130046	6364		NM_004591	ENSG00000115009	CCL20	CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38	C-C motif chemokine ligand 20	protein-coding
69956	chr14	99685701	99685950	+	0	NA	intron (NM_006668, intron 1 of 14)	intron (NM_006668, intron 1 of 14)	1527	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
96137	chr17	39663801	39664250	+	0	NA	3' UTR (NM_006804, exon 15 of 15)	3' UTR (NM_006804, exon 15 of 15)	-1324	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
181398	chr5	40686331	40686990	+	0	NA	intron (NM_000958, intron 2 of 2)	intron (NM_000958, intron 2 of 2)	6745	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
102924	chr17	76581171	76581930	+	0	NA	intron (NM_006456, intron 1 of 8)	intron (NM_006456, intron 1 of 8)	4310	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
105713	chr18	2695571	2695730	+	0	NA	intron (NM_015295, intron 8 of 47)	intron (NM_015295, intron 8 of 47)	39924	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
67549	chr14	71250201	71250600	+	0	NA	Intergenic	Intergenic	-70076	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
171225	chr3	195775071	195775230	+	0	NA	intron (NM_138297, intron 1 of 22)	intron (NM_138297, intron 1 of 22)	36779	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
189404	chr5	172763301	172764300	+	0	NA	Intergenic	Intergenic	7395	NM_004417	1843		NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
59532	chr13	27252971	27253900	+	0	NA	intron (NM_000982, intron 1 of 5)	intron (NM_000982, intron 1 of 5)	-1629	NR_002574	26771		NR_002574	ENSG00000207500	SNORD102	RNU102|Z18	small nucleolar RNA, C/D box 102	snoRNA
92024	chr17	7474521	7475200	+	0	NA	intron (NM_020899, intron 1 of 3)	AluSz|SINE|Alu	4771	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
100195	chr17	59001171	59002400	+	0	NA	intron (NR_148346, intron 22 of 23)	intron (NR_148346, intron 22 of 23)	105095	NM_001353082	4591		NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
146439	chr20	49668451	49669200	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	45053	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
66978	chr14	66496371	66496530	+	0	NA	intron (NR_024338, intron 8 of 10)	intron (NR_024338, intron 8 of 10)	10079	NR_024338	440184		NM_001004331	ENSG00000196553	CCDC196	C14orf53|LINC00238|NCRNA00238	coiled-coil domain containing 196	protein-coding
29391	chr10	70131901	70133280	+	0	NA	intron (NM_001198696, intron 1 of 8)	CpG	235	NM_032797	84883		NM_032797	ENSG00000042286	AIFM2	AMID|FSP1|PRG3	apoptosis inducing factor mitochondria associated 2	protein-coding
65865	chr14	55063751	55064050	+	0	NA	intron (NM_144578, intron 3 of 3)	L4_A_Mam|LINE|RTE-X	12253	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
117434	chr19	19648771	19649130	+	0	NA	intron (NM_020410, intron 19 of 25)	AluSz|SINE|Alu	-5293	NM_001288999	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
118622	chr19	37077851	37079600	+	0	NA	intron (NM_001329519, intron 1 of 4)	intron (NM_001329519, intron 1 of 4)	292	NM_001329524	147923		NM_144689	ENSG00000197050	ZNF420	APAK	zinc finger protein 420	protein-coding
187252	chr5	141417521	141417850	+	0	NA	promoter-TSS (NM_018927)	promoter-TSS (NM_018927)	8	NM_032101	56099		NM_018927	ENSG00000254122	PCDHGB7	ME6|PCDH-GAMMA-B7	protocadherin gamma subfamily B, 7	protein-coding
235784	chrX	49123351	49124430	+	0	NA	promoter-TSS (NM_015698)	promoter-TSS (NM_015698)	-155	NM_015698	27238		NM_015698	ENSG00000068394	GPKOW	GPATC5|GPATCH5|Mos2|Spp2|T54	G-patch domain and KOW motifs	protein-coding
180080	chr5	1107871	1108500	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	3878	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
101708	chr17	68509651	68510450	+	0	NA	intron (NM_001278433, intron 1 of 10)	intron (NM_001278433, intron 1 of 10)	-1730	NM_212471	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
124720	chr2	3656821	3657080	+	0	NA	Intergenic	Intergenic	-1250	NM_018436	55821		NM_018436	ENSG00000151360	ALLC	ALC	allantoicase	protein-coding
232222	chr9	134373251	134373750	+	0	NA	intron (NM_002957, intron 1 of 9)	MIRb|SINE|MIR	-5795	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
202588	chr6	158700251	158700550	+	0	NA	intron (NM_001318745, intron 3 of 14)	AluJo|SINE|Alu	36997	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
82356	chr16	15968171	15968330	+	0	NA	intron (NM_004996, intron 1 of 30)	AluSx|SINE|Alu	18634	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
83836	chr16	28865401	28865600	+	0	NA	5' UTR (NM_015503, exon 1 of 9)	5' UTR (NM_015503, exon 1 of 9)	1507	NM_015503	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
5315	chr1	25229421	25229980	+	0	NA	intron (NM_015484, intron 2 of 6)	AluSx|SINE|Alu	2802	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
38663	chr11	46386751	46387230	+	0	NA	intron (NM_001366692, intron 1 of 1)	L2b|LINE|L2	4678	NM_001366692	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
65890	chr14	55184471	55184630	+	0	NA	intron (NM_014750, intron 2 of 18)	MLT1F|LTR|ERVL-MaLR	7035	NM_001146015	9787		NM_014750	ENSG00000126787	DLGAP5	DLG7|HURP	DLG associated protein 5	protein-coding
172402	chr4	1789301	1789700	+	0	NA	Intergenic	Intergenic	-3793	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
136031	chr2	172462801	172464450	+	0	NA	TTS (NR_157573)	TTS (NR_157573)	2397	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
237393	chrX	119512551	119512650	+	0	NA	Intergenic	Intergenic	-43480	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
197770	chr6	87573851	87574550	+	0	NA	intron (NR_146756, intron 1 of 19)	intron (NR_146756, intron 1 of 19)	15787	NM_020320	57038		NM_014107	ENSG00000146282	RARS2	ArgRS|DALRD2|PCH6|PRO1992|RARSL	arginyl-tRNA synthetase 2, mitochondrial	protein-coding
97867	chr17	45020451	45021030	+	0	NA	Intergenic	Intergenic	30892	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
169477	chr3	169662271	169663700	+	0	NA	intron (NM_004991, intron 1 of 16)	CpG	727	NM_001205194	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
149195	chr21	23950401	23950600	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	370877	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
14857	chr1	146392551	146392850	+	0	NA	Intergenic	L1MEc|LINE|L1	15893	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
105614	chr18	730151	730400	+	0	NA	intron (NM_005433, intron 11 of 11)	L1MEg|LINE|L1	-17611	NR_148711	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
134970	chr2	152172501	152172900	+	0	NA	intron (NM_005843, intron 1 of 13)	AluSz|SINE|Alu	3063	NM_005843	10254		NM_005843	ENSG00000115145	STAM2	Hbp|STAM2A|STAM2B	signal transducing adaptor molecule 2	protein-coding
23885	chr1	234912671	234912850	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	51239	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
66741	chr14	64508451	64508630	+	0	NA	intron (NM_001123329, intron 1 of 1)	intron (NM_001123329, intron 1 of 1)	-3327	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
238958	chrX	155070851	155072380	+	0	NA	promoter-TSS (NM_001018025)	promoter-TSS (NM_001018025)	107	NM_001018055	79184		NM_024332	ENSG00000185515	BRCC3	BRCC36|C6.1A|CXorf53	BRCA1/BRCA2-containing complex subunit 3	protein-coding
234018	chrX	3707521	3708330	+	0	NA	intron (NM_005044, intron 1 of 8)	intron (NM_005044, intron 1 of 8)	5724	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
136304	chr2	174830521	174830780	+	0	NA	intron (NM_001025201, intron 7 of 12)	MamRTE1|LINE|RTE-BovB	16905	NM_001206602	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
39296	chr11	58579601	58580350	+	0	NA	intron (NM_053023, intron 1 of 10)	intron (NM_053023, intron 1 of 10)	861	NR_024091	386607		NM_170768		ZFP91-CNTF	ZFP91|ZNF757|Zfp-91	ZFP91-CNTF readthrough (NMD candidate)	ncRNA
200945	chr6	139170451	139171030	+	0	NA	intron (NM_016217, intron 2 of 3)	intron (NM_016217, intron 2 of 3)	35660	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
150364	chr21	42216021	42216280	+	0	NA	promoter-TSS (NM_207629)	promoter-TSS (NM_207629)	73	NM_207629	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
108890	chr18	79411901	79412750	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	12026	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
58894	chr13	19564771	19565230	+	0	NA	Intergenic	CpG	-3426	NR_073485	93492		NM_130785	ENSG00000132958	TPTE2	TPIP	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2	protein-coding
112208	chr19	5689911	5692790	+	0	NA	TTS (NM_004793)	TTS (NM_004793)	1055	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
180201	chr5	1499701	1500230	+	0	NA	intron (NM_024830, intron 2 of 13)	intron (NM_024830, intron 2 of 13)	10891	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
167679	chr3	130096651	130096750	+	0	NA	intron (NM_001136152, intron 6 of 7)	intron (NM_001136152, intron 6 of 7)	-2396	NR_146710	105374105		NR_146710		LINC02014	-	long intergenic non-protein coding RNA 2014	ncRNA
235683	chrX	48676051	48677380	+	0	NA	Intergenic	CpG	-7084	NM_000377	7454		NM_000377	ENSG00000015285	WAS	IMD2|SCNX|THC|THC1|WASP|WASPA	WASP actin nucleation promoting factor	protein-coding
120432	chr19	44095001	44095590	+	0	NA	intron (NM_001321645, intron 1 of 5)	MIR|SINE|MIR	934	NM_001321645	7767		NM_013398	ENSG00000267680	ZNF224	BMZF-2|BMZF2|KOX22|ZNF233|ZNF255|ZNF27	zinc finger protein 224	protein-coding
231405	chr9	130995471	130995830	+	0	NA	Intergenic	Intergenic	-13524	NM_006059	10319		NM_006059	ENSG00000050555	LAMC3	OCCM	laminin subunit gamma 3	protein-coding
125578	chr2	16628201	16628800	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	37334	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
238608	chrX	153933621	153933880	+	0	NA	intron (NM_001256120, intron 3 of 7)	L1MC2|LINE|L1	1287	NM_001256119	8260		NM_003491	ENSG00000102030	NAA10	ARD1|ARD1A|ARD1P|DXS707|LZMS|MAA|MCOPS1|NATD|OGDNS|TE2|hARD1	N-alpha-acetyltransferase 10, NatA catalytic subunit	protein-coding
105136	chr17	82235271	82235690	+	0	NA	promoter-TSS (NM_001206952)	promoter-TSS (NM_001206952)	-294	NM_001206952	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
37125	chr11	13333601	13334580	+	0	NA	intron (NM_001351821, intron 3 of 19)	MIR|SINE|MIR	56300	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
144187	chr20	34205401	34205800	+	0	NA	intron (NM_001385218, intron 1 of 3)	LTR12D|LTR|ERV1	11038	NM_001385218	434		NM_001672	ENSG00000101440	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
129757	chr2	71000801	71001830	+	0	NA	Intergenic	Intergenic	-6442	NM_144582	113419		NM_144582	ENSG00000144043	TEX261	TEG-261	testis expressed 261	protein-coding
192821	chr6	27078821	27079100	+	0	NA	Intergenic	MER61B|LTR|ERV1	53835	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
205630	chr7	22550371	22550530	+	0	NA	Intergenic	Intergenic	-12887	NR_038393	100506178		NR_038393	ENSG00000232759	STEAP1B-AS1	-	STEAP1B antisense RNA 1	ncRNA
30888	chr10	86964071	86964430	+	0	NA	TTS (NM_001330120)	TTS (NM_001330120)	-4232	NM_006829	10974		NM_006829	ENSG00000148671	ADIRF	AFRO|APM2|C10orf116|apM-2	adipogenesis regulatory factor	protein-coding
98800	chr17	48259851	48259950	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-34447	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
213574	chr7	139344501	139344900	+	0	NA	intron (NM_197964, intron 1 of 1)	AluY|SINE|Alu	3363	NM_197964	154791		NM_197964	ENSG00000164898	FMC1	C7orf55|HSPC268	formation of mitochondrial complex V assembly factor 1 homolog	protein-coding
44284	chr11	102305771	102306130	+	0	NA	Intergenic	Intergenic	-11534	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
11517	chr1	90967151	90967450	+	0	NA	intron (NM_201269, intron 2 of 5)	L2c|LINE|L2	54208	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
237099	chrX	104112151	104113000	+	0	NA	promoter-TSS (NR_026694)	promoter-TSS (NR_026694)	52	NM_001143978	644353		NM_001143978	ENSG00000166707	ZCCHC18	PNMA7B|SIZN2	zinc finger CCHC-type containing 18	protein-coding
107097	chr18	35049101	35049380	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	7827	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
172174	chr4	1230021	1230700	+	0	NA	intron (NM_001377193, intron 3 of 9)	intron (NM_001377193, intron 3 of 9)	18368	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
132947	chr2	111456671	111456830	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	38411	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
202949	chr6	161050101	161050500	+	0	NA	intron (NM_006724, intron 3 of 25)	Plat_L3|LINE|CR1	58531	NM_005922	4216		NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
30181	chr10	74306371	74306530	+	0	NA	intron (NM_001369123, intron 3 of 9)	L1MEf|LINE|L1	129687	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
99852	chr17	55514021	55514350	+	0	NA	Intergenic	Intergenic	-92350	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
236752	chrX	78516821	78517580	+	0	NA	Intergenic	L1MA10|LINE|L1	142128	NM_152694	203430		NM_152694	ENSG00000179300	RTL3	Mar3|Mart3|SIRH9|ZCCHC5|ZHC5	retrotransposon Gag like 3	protein-coding
98461	chr17	47097521	47098000	+	0	NA	Intergenic	AluSz|SINE|Alu	91535	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
94230	chr17	28657151	28657730	+	0	NA	intron (NR_045585, intron 1 of 2)	AluJb|SINE|Alu	4466	NM_006923	6388		NM_006923	ENSG00000132581	SDF2	-	stromal cell derived factor 2	protein-coding
219780	chr8	81134271	81134750	+	0	NA	Intergenic	L2b|LINE|L2	-22442	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
63985	chr14	22272551	22272650	+	0	NA	Intergenic	Intergenic	160153	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
130691	chr2	86552701	86553360	+	0	NA	intron (NM_001198954, intron 3 of 7)	L1PA11|LINE|L1	10413	NM_001193517	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
216583	chr8	22009851	22010760	+	0	NA	Intergenic	CpG	-13829	NM_001286680	10361		NM_182795	ENSG00000158806	NPM2	-	nucleophosmin/nucleoplasmin 2	protein-coding
237142	chrX	107000001	107000480	+	0	NA	promoter-TSS (NM_001085354)	promoter-TSS (NM_001085354)	-28	NM_024657	79710		NM_024657	ENSG00000133131	MORC4	ZCW4|ZCWCC2|dJ75H8.2	MORC family CW-type zinc finger 4	protein-coding
2135	chr1	8350201	8350400	+	0	NA	Intergenic	Intergenic	32186	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
51210	chr12	50531001	50531650	+	0	NA	intron (NM_173602, intron 1 of 37)	AluY|SINE|Alu	26340	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
38009	chr11	35081671	35083100	+	0	NA	Intergenic	Intergenic	55647	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
181366	chr5	40578571	40579330	+	0	NA	Intergenic	L1PA8|LINE|L1	-100965	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
82891	chr16	21608071	21608230	+	0	NA	intron (NM_016025, intron 1 of 4).2	AluSx1|SINE|Alu	8573	NM_016025	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
137992	chr2	201247001	201247430	+	0	NA	intron (NM_033355, intron 2 of 9)	AluSg4|SINE|Alu	-10820	NM_001080125	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
82405	chr16	16222821	16224400	+	0	NA	promoter-TSS (NM_001171)	promoter-TSS (NM_001171)	-116	NM_001171	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
102199	chr17	75174221	75174480	+	0	NA	intron (NM_001005849, intron 2 of 2)	AluSz|SINE|Alu	8609	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
232197	chr9	134322321	134323380	+	0	NA	Intergenic	(TCCTC)n|Simple_repeat|Simple_repeat	-3605	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
26171	chr10	14508201	14508850	+	0	NA	Intergenic	Intergenic	24189	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
81433	chr16	8860451	8861230	+	0	NA	TTS (NR_147908)	TTS (NR_147908)	970	NM_001278265	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
194792	chr6	34225651	34226050	+	0	NA	Intergenic	Intergenic	-11023	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
4294	chr1	20058501	20059200	+	0	NA	Intergenic	Intergenic	-11344	NM_000929	5322		NM_000929	ENSG00000127472	PLA2G5	FRFB|GV-PLA2|PLA2-10|hVPLA(2)	phospholipase A2 group V	protein-coding
25990	chr10	11995321	11995580	+	0	NA	intron (NM_080599, intron 8 of 21)	L2a|LINE|L2	47359	NM_015542	26019		NM_015542	ENSG00000151461	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense mediated mRNA decay	protein-coding
84581	chr16	30637851	30638550	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-12578	NM_001320464	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
106203	chr18	11628451	11629100	+	0	NA	Intergenic	Intergenic	19217	NM_001282300	646000		NM_001282300	ENSG00000236396	SLC35G4	AMAC1L1|SLC35G4P	solute carrier family 35 member G4	protein-coding
29856	chr10	72357101	72357300	+	0	NA	Intergenic	L2a|LINE|L2	-2281	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
82198	chr16	14977171	14977930	+	0	NA	intron (NM_001324019, intron 1 of 22)	AluSg|SINE|Alu	2524	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
189172	chr5	171403401	171404280	+	0	NA	intron (NM_002520, intron 8 of 10)	SVA_F|Retroposon|SVA	-15807	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
116815	chr19	18554851	18554950	+	0	NA	Intergenic	AluSx|SINE|Alu	-2862	NM_001171948	79036		NM_024069	ENSG00000105700	KXD1	BORCS4|C10orf50|C19orf50|KXDL|MST096|MSTP096	KxDL motif containing 1	protein-coding
128041	chr2	47487151	47487450	+	0	NA	Intergenic	Intergenic	-40237	NR_120602	644093		NR_120602	ENSG00000235760	MSH2-OT1	HCG2040054	MSH2 overlapping transcript 1	ncRNA
156895	chr22	42182501	42182700	+	0	NA	intron (NM_005650, intron 2 of 5)	intron (NM_005650, intron 2 of 5)	-38046	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
102042	chr17	74865751	74865950	+	0	NA	intron (NM_001258012, intron 5 of 11)	intron (NM_001258012, intron 5 of 11)	2903	NM_001258016	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
1721	chr1	5688601	5688800	+	0	NA	Intergenic	Intergenic	174041	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
207294	chr7	44004671	44005200	+	0	NA	intron (NM_175064, intron 3 of 6)	intron (NM_175064, intron 3 of 6)	3995	NM_175064	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
217410	chr8	28370221	28370680	+	0	NA	intron (NM_018660, intron 1 of 9)	CR1_Mam|LINE|CR1	16010	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
25965	chr10	11673871	11674230	+	0	NA	Intergenic	Intergenic	-62261	NR_125732	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
26878	chr10	25726071	25726230	+	0	NA	intron (NR_108068, intron 2 of 2)	MamRep1527|LTR|LTR	74438	NR_108067	101929052		NR_108067	ENSG00000280809	LINC00836	-	long intergenic non-protein coding RNA 836	ncRNA
106156	chr18	9916271	9916650	+	0	NA	intron (NM_194434, intron 1 of 5)	intron (NM_194434, intron 1 of 5)	2444	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
41130	chr11	65573601	65575200	+	0	NA	TTS (NM_001098785)	TTS (NM_001098785)	-1638	NM_001351087	254102		NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1 like 1	protein-coding
93329	chr17	18190651	18191230	+	0	NA	intron (NM_017758, intron 1 of 3)	intron (NM_017758, intron 1 of 3)	7112	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
206650	chr7	36202071	36202630	+	0	NA	intron (NM_030636, intron 2 of 7)	intron (NM_030636, intron 2 of 7)	49096	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
177288	chr4	109576651	109576950	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	16554	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
129281	chr2	68426951	68427850	+	0	NA	Intergenic	Intergenic	39894	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
107746	chr18	50286371	50286900	+	0	NA	exon (NM_014593, exon 3 of 15)	exon (NM_014593, exon 3 of 15)	1687	NM_014593	30827		NM_014593	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
143131	chr20	23637371	23638200	+	0	NA	exon (NM_001288614, exon 1 of 4)	exon (NM_001288614, exon 1 of 4)	170	NM_001288614	1471		NM_000099	ENSG00000101439	CST3	ARMD11|HEL-S-2	cystatin C	protein-coding
18571	chr1	163071851	163072030	+	0	NA	promoter-TSS (NM_001113380)	promoter-TSS (NM_001113380)	35	NM_001113380	5999		NM_005613	ENSG00000117152	RGS4	RGP4|SCZD9	regulator of G protein signaling 4	protein-coding
97307	chr17	43232201	43232680	+	0	NA	Intergenic	MER96B|DNA|hAT-Tip100	1537	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
130874	chr2	87409951	87410580	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-45162	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
125198	chr2	10234071	10234430	+	0	NA	Intergenic	Intergenic	-41579	NR_036222	100422929		NR_036222	ENSG00000265418	MIR4261	-	microRNA 4261	ncRNA
204374	chr7	2977151	2977250	+	0	NA	intron (NM_032415, intron 1 of 24)	L1MB5|LINE|L1	66667	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
3703	chr1	16579471	16579630	+	0	NA	intron (NM_017940, intron 16 of 28)	intron (NM_017940, intron 16 of 28)	30636	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
100462	chr17	61406771	61407200	+	0	NA	intron (NM_005994, intron 6 of 6)	intron (NM_005994, intron 6 of 6)	-4766	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
213929	chr7	142618621	142618980	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-47499	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
117482	chr19	19782001	19782200	+	0	NA	intron (NM_001355194, intron 1 of 2)	Harlequin-int|LTR|ERV1	5526	NM_001355194	7608		NM_001355194	ENSG00000291177	ZNF56P	ZNF56|ZNF742	zinc finger protein 56, pseudogene	pseudo
59849	chr13	30474701	30475130	+	0	NA	intron (NM_001370340, intron 1 of 4)	AluYh7|SINE|Alu	-8938	NM_001363661	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
46242	chr11	124719651	124720030	+	0	NA	Intergenic	Intergenic	-20102	NM_006176	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
206900	chr7	37832271	37832630	+	0	NA	Intergenic	Intergenic	-16147	NM_016616	51314		NM_016616	ENSG00000086288	NME8	CILD6|DNAI8|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2	NME/NM23 family member 8	protein-coding
222406	chr8	134324351	134325180	+	0	NA	Intergenic	LTR101_Mam|LTR|ERVL	-273306	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
233008	chr9	137011471	137011630	+	0	NA	exon (NM_001606, exon 37 of 49)	exon (NM_001606, exon 37 of 49)	-14982	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
153130	chr22	23736271	23736430	+	0	NA	Intergenic	Intergenic	14762	NM_021916	7621		NM_021916	ENSG00000187792	ZNF70	Cos17	zinc finger protein 70	protein-coding
235732	chrX	48923701	48924030	+	0	NA	exon (NM_017602, exon 7 of 9)	exon (NM_017602, exon 7 of 9)	-4841	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
91184	chr17	3865401	3865600	+	0	NA	3' UTR (NM_172207, exon 16 of 16)	3' UTR (NM_172207, exon 16 of 16)	-19254	NM_001114118	55421		NM_018553	ENSG00000074356	NCBP3	C17orf85|ELG|HSA277841	nuclear cap binding subunit 3	protein-coding
13669	chr1	116563971	116564130	+	0	NA	intron (NR_026665, intron 1 of 5)	THE1B-int|LTR|ERVL-MaLR	-3939	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
14819	chr1	146296101	146296300	+	0	NA	Intergenic	L1PB3|LINE|L1	-1573	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
149575	chr21	33240351	33241150	+	0	NA	intron (NM_001385055, intron 1 of 9)	AluJb|SINE|Alu	10812	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
185625	chr5	131514371	131514530	+	0	NA	intron (NM_016340, intron 7 of 27)	L1MEf|LINE|L1	120779	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
67832	chr14	73886051	73888530	+	0	NA	intron (NM_001242924, intron 1 of 13)	intron (NM_001242924, intron 1 of 13)	431	NM_001242927	57862		NM_021188	ENSG00000119725	ZNF410	APA-1|APA1	zinc finger protein 410	protein-coding
234540	chrX	19682171	19683540	+	0	NA	intron (NM_001353892, intron 7 of 17)	intron (NM_001353892, intron 7 of 17)	-11856	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
144355	chr20	35013921	35014180	+	0	NA	intron (NM_199368, intron 10 of 18)	intron (NM_199368, intron 10 of 18)	-23578	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
24894	chr10	1020351	1020650	+	0	NA	TTS (NM_012341)	TTS (NM_012341)	-2137	NR_027709	55853		NM_018470	ENSG00000232656	IDI2-AS1	C10orf110|HT009|IDI2-AS	IDI2 antisense RNA 1	ncRNA
169111	chr3	155745921	155746480	+	0	NA	Intergenic	Intergenic	-1129	NM_001349251	23007		NM_014996	ENSG00000114805	PLCH1	HPE14|PLC eta 1|PLC-L3|PLCL3	phospholipase C eta 1	protein-coding
1308	chr1	2394871	2395030	+	0	NA	intron (NM_007033, intron 1 of 6)	intron (NM_007033, intron 1 of 6)	3109	NM_007033	11079		NM_007033	ENSG00000157916	RER1	-	retention in endoplasmic reticulum sorting receptor 1	protein-coding
65305	chr14	50084751	50085050	+	0	NA	intron (NR_131171, intron 2 of 8)	MLT1F2|LTR|ERVL-MaLR	20143	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
181854	chr5	53112371	53112530	+	0	NA	non-coding (NR_034107, exon 2 of 3)	non-coding (NR_034107, exon 2 of 3)	2608	NR_104654	257396		NR_034107	ENSG00000247796	MOCS2-DT	-	MOCS2 divergent transcript	ncRNA
85887	chr16	57056401	57056600	+	0	NA	intron (NM_001384959, intron 27 of 46)	AluJo|SINE|Alu	-36083	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
29465	chr10	70540421	70540900	+	0	NA	intron (NM_014431, intron 15 of 19)	intron (NM_014431, intron 15 of 19)	61893	NM_014431	27143		NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	phosphatase domain containing paladin 1	protein-coding
209554	chr7	77328021	77328950	+	0	NA	intron (NR_146938, intron 21 of 29)	intron (NR_146938, intron 21 of 29)	-86713	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
31447	chr10	95864921	95865500	+	0	NA	intron (NM_001320916, intron 9 of 9)	intron (NM_001320916, intron 9 of 9)	-42765	NM_001349008	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
129000	chr2	64818651	64818980	+	0	NA	Intergenic	Intergenic	44816	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
74734	chr15	63198321	63198930	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	9019	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
68476	chr14	87989421	87989680	+	0	NA	intron (NM_001201402, intron 1 of 16)	intron (NM_001201402, intron 1 of 16)	3632	NM_000153	2581		NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
186026	chr5	134000171	134001080	+	0	NA	intron (NM_003374, intron 1 of 8)	MIRb|SINE|MIR	4143	NR_036624								
182915	chr5	70493351	70493750	+	0	NA	intron (NR_034021, intron 10 of 10)	MLT1A|LTR|ERVL-MaLR	7049	NR_073404	441081		NR_073404		LOC441081	-	POM121 membrane glycoprotein (rat) pseudogene	pseudo
187350	chr5	141684601	141684950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2545	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
171838	chr4	688071	688230	+	0	NA	intron (NM_032219, intron 1 of 9)	intron (NM_032219, intron 1 of 9)	1001	NM_001378060	84179		NM_032219	ENSG00000169026	SLC49A3	LP2561|MFSD7	solute carrier family 49 member 3	protein-coding
80353	chr16	2507871	2508500	+	0	NA	Intergenic	L1MB5|LINE|L1	-5541	NM_001198569	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
159792	chr3	16323421	16323680	+	0	NA	non-coding (NR_148219, exon 12 of 12)	non-coding (NR_148219, exon 12 of 12)	58338	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
119712	chr19	41144371	41144760	+	0	NA	Intergenic	MIRb|SINE|MIR	30133	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
17193	chr1	156243851	156244650	+	0	NA	TTS (NM_199173)	TTS (NM_199173)	2066	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
196506	chr6	43670771	43671130	+	0	NA	TTS (NM_001193343)	TTS (NM_001193343)	16841	NM_018135	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
149462	chr21	31708901	31709300	+	0	NA	intron (NM_001145444, intron 1 of 18)	intron (NM_001145444, intron 1 of 18)	23018	NM_001145445	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
29490	chr10	70585271	70585630	+	0	NA	Intergenic	Intergenic	17291	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
225948	chr9	41033451	41033550	+	0	NA	intron (NR_156730, intron 5 of 6)	LTR33|LTR|ERVL	41125	NR_002836	595135		NR_002836	ENSG00000290923	PGM5P2	-	phosphoglucomutase 5 pseudogene 2	pseudo
48229	chr12	8233301	8233980	+	0	NA	intron (NR_024254, intron 4 of 4)	intron (NR_024254, intron 4 of 4)	-1775	NR_120455	101927905		NR_120454	ENSG00000215241	LINC02449	-	long intergenic non-protein coding RNA 2449	ncRNA
22584	chr1	223008121	223008200	+	0	NA	Intergenic	Intergenic	79736	NM_001369594	84976		NM_032890	ENSG00000154309	DISP1	DISPA	dispatched RND transporter family member 1	protein-coding
66162	chr14	60510001	60511050	+	0	NA	intron (NM_007374, intron 1 of 1)	CpG	1379	NM_007374	4990		NM_007374	ENSG00000184302	SIX6	MCOPCT2|ODRMD|OPTX2|Six9	SIX homeobox 6	protein-coding
78487	chr15	92916151	92916730	+	0	NA	intron (NM_001042572, intron 2 of 12)	L1ME3C|LINE|L1	12041	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
120484	chr19	44751971	44752400	+	0	NA	intron (NM_005178, intron 2 of 8)	intron (NM_005178, intron 2 of 8)	3477	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
232320	chr9	134848571	134848730	+	0	NA	TTS (NR_037460)	TTS (NR_037460)	719	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	ncRNA
100575	chr17	62968221	62968930	+	0	NA	intron (NM_025185, intron 1 of 25)	intron (NM_025185, intron 1 of 25)	2340	NM_025185	26115		NM_015623	ENSG00000170921	TANC2	IDDALDS|ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
23770	chr1	233010121	233010200	+	0	NA	intron (NM_014801, intron 28 of 33)	intron (NM_014801, intron 28 of 33)	59318	NR_138027	84284		NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase|THEP1	nucleoside-triphosphatase, cancer-related	protein-coding
2043	chr1	7781221	7781680	+	0	NA	TTS (NM_004781)	TTS (NM_004781)	-2841	NM_001289863	8863		NM_016831	ENSG00000049246	PER3	FASPS3|GIG13	period circadian regulator 3	protein-coding
113022	chr19	7927671	7928350	+	0	NA	intron (NM_006351, intron 11 of 12)	intron (NM_006351, intron 11 of 12)	-1875	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
86051	chr16	57576121	57576980	+	0	NA	3' UTR (NM_001304376, exon 12 of 12)	3' UTR (NM_001304376, exon 12 of 12)	33907	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
42627	chr11	72235851	72236150	+	0	NA	intron (NM_001567, intron 25 of 27)	intron (NM_001567, intron 25 of 27)	8176	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
113944	chr19	10753201	10753600	+	0	NA	intron (NM_001005362, intron 1 of 19)	(CTTTCC)n|Simple_repeat|Simple_repeat	-26854	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
43295	chr11	76200321	76200580	+	0	NA	intron (NM_004626, intron 1 of 4)	intron (NM_004626, intron 1 of 4)	6052	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
214221	chr7	148838851	148839580	+	0	NA	intron (NM_001203248, intron 3 of 19)	intron (NM_001203248, intron 3 of 19)	44270	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
189592	chr5	175654751	175655200	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-3096	NR_160284	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
77881	chr15	89041021	89041280	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-47306	NM_007011	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
229311	chr9	120874501	120874900	+	0	NA	exon (NM_001286843, exon 2 of 5)	exon (NM_001286843, exon 2 of 5)	2488	NM_001009936	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
196887	chr6	52262721	52263180	+	0	NA	Intergenic	Intergenic	-18450	NM_052872	112744		NM_052872	ENSG00000112116	IL17F	CANDF6|IL-17F|IL17A|ML-1|ML1	interleukin 17F	protein-coding
97936	chr17	45165121	45165430	+	0	NA	intron (NM_144608, intron 3 of 3)	(AC)n|Simple_repeat|Simple_repeat	3416	NM_001303444	124790		NM_144608	ENSG00000168517	HEXIM2	L3	HEXIM P-TEFb complex subunit 2	protein-coding
201892	chr6	151006121	151006400	+	0	NA	promoter-TSS (NM_001350490)	promoter-TSS (NM_001350490)	-748	NM_001350490	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
145459	chr20	43668671	43669350	+	0	NA	intron (NM_001278610, intron 1 of 12)	AluSx3|SINE|Alu	1896	NM_002466	4605		NM_002466	ENSG00000101057	MYBL2	B-MYB|BMYB	MYB proto-oncogene like 2	protein-coding
38590	chr11	46242921	46243730	+	0	NA	Intergenic	Intergenic	-34337	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
234273	chrX	13428501	13428780	+	0	NA	Intergenic	LTR16C|LTR|ERVL	93399	NR_045260	100133123		NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA
123641	chr19	54653201	54653400	+	0	NA	Intergenic	Intergenic	7991	NR_107028	102466251		NR_107028	ENSG00000277636	MIR8061	hsa-mir-8061	microRNA 8061	ncRNA
77188	chr15	80455721	80456150	+	0	NA	intron (NM_014862, intron 2 of 18)	intron (NM_014862, intron 2 of 18)	51553	NM_014862	9915		NM_014862	ENSG00000172379	ARNT2	WEDAS|bHLHe1	aryl hydrocarbon receptor nuclear translocator 2	protein-coding
57718	chr12	122873171	122873330	+	0	NA	intron (NM_024667, intron 1 of 3)	L1MD1|LINE|L1	22874	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
43260	chr11	75561751	75563050	+	0	NA	intron (NM_001235, intron 1 of 4)	CpG	147	NM_001235	871		NM_001235	ENSG00000149257	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46	serpin family H member 1	protein-coding
42974	chr11	73776171	73776330	+	0	NA	Intergenic	Intergenic	-11624	NR_134658	51642		NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48|mL48	mitochondrial ribosomal protein L48	protein-coding
180919	chr5	34415871	34416050	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-171236	NR_146599	114899		NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and TNF related 3	protein-coding
64994	chr14	38088271	38088750	+	0	NA	Intergenic	Intergenic	-119394	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
70825	chr14	103624071	103624450	+	0	NA	Intergenic	Intergenic	-4928	NM_005552	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
102579	chr17	75875421	75877200	+	0	NA	exon (NM_033452, exon 3 of 6)	exon (NM_033452, exon 3 of 6)	2271	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
52529	chr12	56112771	56113130	+	0	NA	3' UTR (NM_006191, exon 13 of 13)	3' UTR (NM_006191, exon 13 of 13)	-3683	NM_001035267	6171		NM_021104	ENSG00000229117	RPL41	L41|eL41	ribosomal protein L41	protein-coding
232577	chr9	136383321	136383580	+	0	NA	exon (NM_003086, exon 15 of 23)	exon (NM_003086, exon 15 of 23)	-9781	NM_052813	64170		NM_022352	ENSG00000187796	CARD9	CANDF2|IMD103|hCARD9	caspase recruitment domain family member 9	protein-coding
65456	chr14	51746771	51747750	+	0	NA	Intergenic	SATR1|Satellite|Satellite	29977	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
38565	chr11	45967171	45967530	+	0	NA	intron (NR_147890, intron 8 of 18)	AluSz6|SINE|Alu	44694	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
142857	chr20	17620671	17620830	+	0	NA	exon (NM_001365613, exon 17 of 25)	exon (NM_001365613, exon 17 of 25)	50675	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
135051	chr2	156345601	156345800	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-3580	NR_147695	440918		NR_147695		FLJ46875	-	uncharacterized LOC440918	ncRNA
172594	chr4	2482571	2483530	+	0	NA	intron (NM_001185009, intron 2 of 8)	intron (NM_001185009, intron 2 of 8)	13597	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
98360	chr17	46359621	46360030	+	0	NA	intron (NM_001039083, intron 1 of 3).5	AluSx|SINE|Alu	1941	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
40151	chr11	62859621	62859880	+	0	NA	intron (NM_001012664, intron 1 of 9)	intron (NM_001012664, intron 1 of 9)	3641	NM_001012664	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
77723	chr15	85703161	85703800	+	0	NA	intron (NM_007200, intron 17 of 36)	intron (NM_007200, intron 17 of 36)	55245	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
34432	chr10	132414721	132414980	+	0	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	17650	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
13003	chr1	111183901	111184300	+	0	NA	intron (NR_138485, intron 9 of 9)	intron (NR_138485, intron 9 of 9)	16546	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
173745	chr4	16212171	16212530	+	0	NA	intron (NM_153365, intron 2 of 13)	intron (NM_153365, intron 2 of 13)	14121	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
166810	chr3	122609701	122610500	+	0	NA	intron (NM_001113523, intron 2 of 11)	(CTGTCT)n|Simple_repeat|Simple_repeat	-5515	NM_152615	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
125166	chr2	10042801	10043700	+	0	NA	promoter-TSS (NM_001177716)	promoter-TSS (NM_001177716)	151	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
80634	chr16	2989051	2989800	+	0	NA	non-coding (NR_033861, exon 1 of 5)	non-coding (NR_033861, exon 1 of 5)	371	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
211620	chr7	106014821	106015280	+	0	NA	intron (NM_001301161, intron 8 of 17)	L1ME4c|LINE|L1	51786	NM_152750	222256		NM_152750	ENSG00000128536	CDHR3	CDH28	cadherin related family member 3	protein-coding
171467	chr3	196423901	196424100	+	0	NA	intron (NM_015562, intron 1 of 10)	AluSx1|SINE|Alu	-7385	NR_046745	100874034		NR_046745		UBXN7-AS1	-	UBXN7 antisense RNA 1	ncRNA
225660	chr9	36444171	36444650	+	0	NA	Intergenic	L1PA11|LINE|L1	-43212	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
26607	chr10	22315071	22315230	+	0	NA	Intergenic	Intergenic	-1233	NM_001204062	100532731		NM_001204062	ENSG00000269897	COMMD3-BMI1	BMI1|PCGF4|RNF51	COMMD3-BMI1 readthrough	protein-coding
36716	chr11	9005851	9006600	+	0	NA	Intergenic	Intergenic	-2224	NM_020645	56675		NM_020645	ENSG00000175352	NRIP3	C11orf14|NY-SAR-105	nuclear receptor interacting protein 3	protein-coding
27932	chr10	42067321	42067780	+	0	NA	Intergenic	Intergenic	300495	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
111126	chr19	3243821	3244430	+	0	NA	intron (NR_033342, intron 1 of 12)	intron (NR_033342, intron 1 of 12)	18847	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
150856	chr21	44080821	44081750	+	0	NA	intron (NM_003274, intron 13 of 22)	AluJo|SINE|Alu	6961	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
60094	chr13	36431551	36432230	+	0	NA	promoter-TSS (NM_001111046)	promoter-TSS (NM_001111046)	60	NM_001111047	8900		NM_003914	ENSG00000133101	CCNA1	CT146	cyclin A1	protein-coding
98395	chr17	46560051	46560150	+	0	NA	intron (NM_001039083, intron 3 of 3).2	intron (NM_001039083, intron 3 of 3).2	19591	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
79646	chr16	1188351	1189200	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	35534	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
40858	chr11	65081971	65082550	+	0	NA	intron (NM_080668, intron 4 of 5)	L2c|LINE|L2	1780	NM_080668	113130		NM_080668	ENSG00000146670	CDCA5	SORORIN	cell division cycle associated 5	protein-coding
83967	chr16	29213851	29213950	+	0	NA	Intergenic	L1ME1|LINE|L1	-88387	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
213194	chr7	132509471	132509930	+	0	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	66770	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
34254	chr10	131311451	131312050	+	0	NA	promoter-TSS (NM_174937)	promoter-TSS (NM_174937)	-29	NM_174937	256536		NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1 like	protein-coding
11559	chr1	91166101	91166330	+	0	NA	Intergenic	Intergenic	-143960	NM_032186	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
15551	chr1	150543201	150543600	+	0	NA	Intergenic	AluSg7|SINE|Alu	-6008	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
18620	chr1	165897171	165897650	+	0	NA	intron (NM_001363568, intron 5 of 7)	intron (NM_001363568, intron 5 of 7)	-10511	NR_037431	100500832		NR_037431	ENSG00000283936	MIR3658	-	microRNA 3658	ncRNA
225589	chr9	36136301	36137880	+	0	NA	intron (NM_001287014, intron 1 of 1)	CpG	305	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
63140	chr13	113506101	113506300	+	0	NA	intron (NM_001349743, intron 5 of 9)	intron (NM_001349743, intron 5 of 9)	15179	NR_146221	55002		NM_017905	ENSG00000150403	TMCO3	C13orf11	transmembrane and coiled-coil domains 3	protein-coding
79428	chr16	701821	702280	+	0	NA	intron (NM_153350, intron 1 of 5)	intron (NM_153350, intron 1 of 5)	3751	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
60968	chr13	46600071	46600230	+	0	NA	intron (NM_015116, intron 1 of 18)	AluSx|SINE|Alu	46980	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
211174	chr7	102588171	102588330	+	0	NA	intron (NM_001079877, intron 16 of 19)	intron (NM_001079877, intron 16 of 19)	-15629	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
227927	chr9	94311851	94312480	+	0	NA	Intergenic	AluSq4|SINE|Alu	16479	NM_017561	54754		NM_017561	ENSG00000130950	NUTM2F	FAM22F|NUTMF	NUT family member 2F	protein-coding
161958	chr3	46268601	46268850	+	0	NA	Intergenic	Intergenic	26265	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
33890	chr10	124464451	124464750	+	0	NA	intron (NM_001167880, intron 1 of 5)	intron (NM_001167880, intron 1 of 5)	2777	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
108121	chr18	62326971	62327130	+	0	NA	intron (NM_001270950, intron 1 of 7)	MER34C2|LTR|ERV1	1740	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
9251	chr1	46184971	46185880	+	0	NA	intron (NM_005727, intron 8 of 8)	intron (NM_005727, intron 8 of 8)	-8937	NM_001303427	110117499		NM_001303427	ENSG00000278139	P3R3URF-PIK3R3	LOC110117498-PIK3R3	P3R3URF-PIK3R3 readthrough	protein-coding
165613	chr3	101684651	101685330	+	0	NA	intron (NM_000986, intron 3 of 5)	L1MB4|LINE|L1	1728	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
16185	chr1	153800351	153800980	+	0	NA	Intergenic	Intergenic	6718	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
122122	chr19	48813821	48814180	+	0	NA	intron (NM_016246, intron 6 of 8)	AluSz6|SINE|Alu	-2971	NM_001190	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
177794	chr4	123391921	123392200	+	0	NA	Intergenic	Intergenic	-4735	NM_001258038	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
39218	chr11	57571671	57571830	+	0	NA	Intergenic	Intergenic	-3420	NM_198183	9246		NM_004223	ENSG00000156587	UBE2L6	RIG-B|UBCH8	ubiquitin conjugating enzyme E2 L6	protein-coding
226863	chr9	78054001	78054600	+	0	NA	Intergenic	L1PA6|LINE|L1	-22489	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
41883	chr11	67246301	67246750	+	0	NA	intron (NM_012308, intron 15 of 20)	intron (NM_012308, intron 15 of 20)	6511	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
159825	chr3	16404551	16404880	+	0	NA	intron (NM_015150, intron 4 of 9)	intron (NM_015150, intron 4 of 9)	108984	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
217145	chr8	25735801	25736030	+	0	NA	Intergenic	L1PA2|LINE|L1	276682	NM_152562	157313		NM_152562	ENSG00000184661	CDCA2	PPP1R81|Repo-Man	cell division cycle associated 2	protein-coding
34774	chr11	206451	208100	+	0	NA	promoter-TSS (NM_021932)	promoter-TSS (NM_021932)	147	NM_001098787	51272		NM_016465	ENSG00000177951	BET1L	BET1L1|GOLIM3|GS15|HSPC197	Bet1 golgi vesicular membrane trafficking protein like	protein-coding
40410	chr11	64125871	64126030	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	40163	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
99581	chr17	50487271	50487630	+	0	NA	Intergenic	Intergenic	8590	NM_018346	55316		NM_018346	ENSG00000136444	RSAD1	HemW	radical S-adenosyl methionine domain containing 1	protein-coding
168405	chr3	142226651	142226950	+	0	NA	Intergenic	Intergenic	-1215	NM_001039547	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
33865	chr10	124406921	124407180	+	0	NA	intron (NM_001322971, intron 2 of 7)	intron (NM_001322971, intron 2 of 7)	11873	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
34615	chr10	133278141	133279330	+	0	NA	TTS (NM_006659)	TTS (NM_006659)	-1867	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
61573	chr13	71864701	71865100	+	0	NA	intron (NM_001366712, intron 1 of 11)	intron (NM_001366712, intron 1 of 11)	2292	NM_004392	1602		NM_004392	ENSG00000276644	DACH1	DACH	dachshund family transcription factor 1	protein-coding
49937	chr12	39723871	39724180	+	0	NA	intron (NR_135051, intron 12 of 18)	LTR16C|LTR|ERVL	97842	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
216755	chr8	22469471	22469850	+	0	NA	intron (NM_005605, intron 1 of 13)	MLT1G3|LTR|ERVL-MaLR	28582	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
161608	chr3	43198301	43198700	+	0	NA	Intergenic	L1MEc|LINE|L1	-88012	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
189747	chr5	176607901	176608730	+	0	NA	intron (NM_052899, intron 1 of 1)	intron (NM_052899, intron 1 of 1)	1841	NM_052899	114787		NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
164088	chr3	56494601	56495100	+	0	NA	Intergenic	Intergenic	-26383	NM_015576	26059		NM_015576	ENSG00000187672	ERC2	CAST|CAST1|ELKSL|SPBC110|Spc110	ELKS/RAB6-interacting/CAST family member 2	protein-coding
229817	chr9	125649471	125649630	+	0	NA	intron (NM_024117, intron 4 of 10)	intron (NM_024117, intron 4 of 10)	57658	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
198899	chr6	109606471	109606780	+	0	NA	intron (NM_001145128, intron 17 of 40)	intron (NM_001145128, intron 17 of 40)	84587	NR_138057	221264		NM_145025	ENSG00000155085	AK9	AK 9|AKD1|AKD2|C6orf199|C6orf224|SPGF89|dJ70A9.1	adenylate kinase 9	protein-coding
196381	chr6	43264751	43265250	+	0	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	21519	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
49455	chr12	25050051	25050350	+	0	NA	intron (NM_001321724, intron 17 of 17)	L1MB1|LINE|L1	-2028	NR_159367	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
162923	chr3	49427251	49427550	+	0	NA	intron (NM_032316, intron 1 of 5)	AluSz|SINE|Alu	1924	NM_032316	84276		NM_032316	ENSG00000145029	NICN1	-	nicolin 1, tubulin polyglutamylase complex subunit	protein-coding
64068	chr14	22560521	22561200	+	0	NA	Intergenic	Intergenic	-3798	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
177693	chr4	121871451	121871550	+	0	NA	Intergenic	L1PB2|LINE|L1	-1003	NM_018190	55212		NM_018190	ENSG00000138686	BBS7	BBS2L1	Bardet-Biedl syndrome 7	protein-coding
93099	chr17	17667171	17667530	+	0	NA	Intergenic	MIRb|SINE|MIR	10338	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
188051	chr5	149959071	149959900	+	0	NA	Intergenic	MIRc|SINE|MIR	-1273	NM_000112	1836		NM_000112	ENSG00000155850	SLC26A2	D5S1708|DTD|DTDST|EDM4|MST153|MSTP157	solute carrier family 26 member 2	protein-coding
165714	chr3	102228951	102229490	+	0	NA	Intergenic	Intergenic	65515	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
184911	chr5	112907101	112907300	+	0	NA	intron (NM_005669, intron 2 of 4)	intron (NM_005669, intron 2 of 4)	15027	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
214843	chr7	151303321	151304080	+	0	NA	Intergenic	CpG	-26551	NM_003078	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
75804	chr15	68924921	68925230	+	0	NA	Intergenic	Intergenic	-5450	NM_145658	246777		NM_145658	ENSG00000258484	SPESP1	ESP|SP-ESP	sperm equatorial segment protein 1	protein-coding
28683	chr10	60729321	60729930	+	0	NA	intron (NM_001204403, intron 1 of 43)	intron (NM_001204403, intron 1 of 43)	3903	NM_001204403	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
2111	chr1	8145521	8146250	+	0	NA	Intergenic	Intergenic	-62787	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
152350	chr22	20437601	20438630	+	0	NA	promoter-TSS (NM_153334)	promoter-TSS (NM_153334)	-290	NM_182895	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
299	chr1	961971	962130	+	0	NA	intron (NM_198317, intron 4 of 11)	CpG-23	1466	NM_198317	339451		NM_198317	ENSG00000187961	KLHL17	AF	kelch like family member 17	protein-coding
117995	chr19	33795321	33795680	+	0	NA	Intergenic	CpG	-1370	NM_001129995	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
157915	chr22	49775021	49775430	+	0	NA	intron (NR_146335, intron 13 of 13)	G-rich|Low_complexity|Low_complexity	49106	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
7707	chr1	36087651	36087750	+	0	NA	intron (NM_014466, intron 8 of 9)	intron (NM_014466, intron 8 of 9)	-1192	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
45729	chr11	119109351	119109550	+	0	NA	intron (NM_001382611, intron 1 of 12)	intron (NM_001382611, intron 1 of 12)	2106	NM_014807	9854		NM_014807	ENSG00000172375	C2CD2L	DLNB23|TMEM24	C2CD2 like	protein-coding
41721	chr11	66657001	66657430	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluJr|SINE|Alu	18512	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
233464	chr9	137695201	137695400	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	76295	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
84852	chr16	31135251	31135350	+	0	NA	intron (NM_002773, intron 1 of 5)	intron (NM_002773, intron 1 of 5)	427	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
203872	chr7	1472271	1472430	+	0	NA	exon (NM_001080453, exon 44 of 48)	exon (NM_001080453, exon 44 of 48)	-12880	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
8029	chr1	38046341	38047850	+	0	NA	promoter-TSS (NR_168387)	promoter-TSS (NR_168387)	-39	NR_168386	105378653		NR_168386		MIR3659HG	-	MIR3659 host gene	ncRNA
107779	chr18	51050171	51050500	+	0	NA	intron (NM_005359, intron 4 of 11)	AluSq2|SINE|Alu	20122	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
136812	chr2	181790821	181791350	+	0	NA	Intergenic	Intergenic	-100645	NM_001287504	6744		NM_006751	ENSG00000138434	ITPRID2	CS-1|CS1|KRAP|SPAG13|SSFA2	ITPR interacting domain containing 2	protein-coding
142351	chr20	3754051	3754150	+	0	NA	TTS (NM_052970)	TTS (NM_052970)	13653	NM_001258430	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
237777	chrX	129775051	129775650	+	0	NA	Intergenic	Intergenic	-4599	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
210229	chr7	99365371	99365930	+	0	NA	intron (NM_001190996, intron 9 of 9)	intron (NM_001190996, intron 9 of 9)	-9080	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
59413	chr13	25289151	25289250	+	0	NA	Intergenic	Intergenic	-1712	NM_001385234	9107		NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
175383	chr4	70703921	70706600	+	0	NA	exon (NM_001130709, exon 1 of 12)	exon (NM_001130709, exon 1 of 12)	323	NM_001130709	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
88404	chr16	84650171	84650530	+	0	NA	intron (NM_024731, intron 1 of 4)	MIRb|SINE|MIR	1839	NM_024731	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
14443	chr1	144401371	144401980	+	0	NA	Intergenic	Intergenic	-10901	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
89230	chr16	88631651	88632150	+	0	NA	TTS (NM_001294340)	TTS (NM_001294340)	-6672	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
7648	chr1	35592401	35592600	+	0	NA	intron (NM_178548, intron 6 of 6)	AluSx1|SINE|Alu	19186	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
178308	chr4	145234101	145234330	+	0	NA	Intergenic	Intergenic	-53626	NM_001366058	54726		NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
142678	chr20	6030671	6031030	+	0	NA	intron (NR_136617, intron 3 of 5)	intron (NR_136617, intron 3 of 5)	23210	NM_152611	164312		NM_152611	ENSG00000125872	LRRN4	C20orf75|NLRR-4|NLRR4|dJ1056H1.1	leucine rich repeat neuronal 4	protein-coding
19705	chr1	181086071	181086550	+	0	NA	Intergenic	Intergenic	-2390	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
81388	chr16	5093271	5093580	+	0	NA	intron (NM_201400, intron 3 of 7)	intron (NM_201400, intron 3 of 7)	4370	NM_201400	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
35985	chr11	2869451	2869930	+	0	NA	promoter-TSS (NR_024627)	promoter-TSS (NR_024627)	-343	NR_024627	55539		NM_018722	ENSG00000237941	KCNQ1DN	BWRT|HSA404617	KCNQ1 downstream neighbor	ncRNA
222094	chr8	130442201	130442400	+	0	NA	intron (NM_001362924, intron 1 of 30)	MIR3|SINE|MIR	1360	NM_001362924	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
127242	chr2	38671451	38671750	+	0	NA	intron (NM_138801, intron 1 of 6)	THE1D|LTR|ERVL-MaLR	5486	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
4180	chr1	19426001	19426600	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	57995	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
13871	chr1	117784771	117784930	+	0	NA	Intergenic	LTR81C|LTR|Gypsy	144771	NM_001135589	54834		NM_017686	ENSG00000196505	GDAP2	MACROD3|SCAR27	ganglioside induced differentiation associated protein 2	protein-coding
166204	chr3	111967651	111968280	+	0	NA	intron (NM_145753, intron 14 of 16)	intron (NM_145753, intron 14 of 16)	-11061	NR_073570	55347		NM_018394	ENSG00000144827	ABHD10	-	abhydrolase domain containing 10, depalmitoylase	protein-coding
82116	chr16	14687971	14688680	+	0	NA	intron (NM_003561, intron 2 of 3).2	intron (NM_003561, intron 2 of 3).2	5983	NM_003561	8399		NM_003561	ENSG00000069764	PLA2G10	GXPLA2|GXSPLA2|SPLA2|sPLA2-X	phospholipase A2 group X	protein-coding
81512	chr16	8966621	8967280	+	0	NA	Intergenic	Intergenic	-3044	NM_003470	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
175089	chr4	54107251	54107580	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	7252	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
98025	chr17	45404451	45404830	+	0	NA	exon (NM_199282, exon 4 of 17).2	exon (NM_199282, exon 4 of 17).2	5746	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
5331	chr1	25249201	25249800	+	0	NA	intron (NR_135788, intron 1 of 3)	AluSz|SINE|Alu	-1981	NR_135143	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
212225	chr7	120960171	120960330	+	0	NA	intron (NM_019071, intron 4 of 11)	L2a|LINE|L2	9473	NM_019071	54556		NM_019071	ENSG00000071243	ING3	Eaf4|ING2|MEAF4|p47ING3	inhibitor of growth family member 3	protein-coding
210047	chr7	94657301	94658800	+	0	NA	intron (NM_001172438, intron 1 of 1)	intron (NM_001172438, intron 1 of 1)	1680	NM_001040152	23089		NM_015068	ENSG00000242265	PEG10	EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1	paternally expressed 10	protein-coding
60324	chr13	40662001	40662580	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	4351	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
23250	chr1	227808751	227808930	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-6845	NM_001374657	339501		NM_183062	ENSG00000185888	PRSS38	MPN2	serine protease 38	protein-coding
119441	chr19	40400721	40400980	+	0	NA	intron (NM_020956, intron 5 of 5)	L2a|LINE|L2	-10669	NM_144685	147746		NM_144685	ENSG00000160396	HIPK4	-	homeodomain interacting protein kinase 4	protein-coding
13178	chr1	112400551	112400850	+	0	NA	intron (NM_018704, intron 1 of 5)	AluSp|SINE|Alu	4486	NM_018704	55917		NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
698	chr1	1403001	1403500	+	0	NA	intron (NM_001318485, intron 3 of 3)	AluY|SINE|Alu	3720	NR_015434	148413		NR_015434	ENSG00000224870	MRPL20-AS1	-	MRPL20 antisense RNA 1	ncRNA
74472	chr15	59798501	59799250	+	0	NA	Intergenic	L1M7|LINE|L1	-109555	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
178971	chr4	160660351	160660550	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-882666	NR_146278	109729132		NR_146278		LINC02233	-	long intergenic non-protein coding RNA 2233	ncRNA
131428	chr2	96289771	96290350	+	0	NA	intron (NM_014014, intron 20 of 44)	intron (NM_014014, intron 20 of 44)	15486	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
146125	chr20	48625421	48626150	+	0	NA	3' UTR (NM_020820, exon 40 of 40)	3' UTR (NM_020820, exon 40 of 40)	202214	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138625	chr2	210013171	210013330	+	0	NA	intron (NM_001278283, intron 3 of 7)	Charlie1a|DNA|hAT-Charlie	10612	NM_199229	6120		NM_006916	ENSG00000197713	RPE	RPE2-1	ribulose-5-phosphate-3-epimerase	protein-coding
49306	chr12	21457671	21458180	+	0	NA	intron (NM_001350913, intron 6 of 10)	Tigger1|DNA|TcMar-Tigger	20010	NM_001350912	79912		NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
230826	chr9	129061351	129061450	+	0	NA	intron (NR_138422, intron 9 of 13)	intron (NR_138422, intron 9 of 13)	-19711	NM_020438	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
194238	chr6	32438871	32439030	+	0	NA	promoter-TSS (NM_019111).6	promoter-TSS (NM_019111).6	-937	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
144967	chr20	37191301	37191500	+	0	NA	intron (NM_001324306, intron 2 of 15)	AluSz6|SINE|Alu	-11852	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
102546	chr17	75837801	75838380	+	0	NA	intron (NM_199242, intron 12 of 31)	intron (NM_199242, intron 12 of 31)	6314	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
86826	chr16	67883471	67884230	+	0	NA	intron (NM_014329, intron 28 of 28)	intron (NM_014329, intron 28 of 28)	-1035	NM_001348682	123904		NM_198443	ENSG00000188038	NRN1L	MRCC2446|UNQ2446|cpg15-2	neuritin 1 like	protein-coding
205853	chr7	24924471	24925050	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	-32139	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
70599	chr14	102784821	102785280	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	7571	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
20161	chr1	192806971	192807670	+	0	NA	Intergenic	MIRc|SINE|MIR	-1719	NM_002923	5997		NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G protein signaling 2	protein-coding
110244	chr19	1781601	1781800	+	0	NA	TTS (NM_138813)	TTS (NM_138813)	28194	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
52401	chr12	55742871	55744430	+	0	NA	exon (NM_005811, exon 1 of 3)	exon (NM_005811, exon 1 of 3)	528	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
159547	chr3	14633771	14634330	+	0	NA	Intergenic	Intergenic	-17696	NR_135523	51244		NM_016474	ENSG00000154781	CCDC174	C3orf19|HSPC212|IHPM|IHPMR|ctr1	coiled-coil domain containing 174	protein-coding
2860	chr1	11291601	11291950	+	0	NA	intron (NM_001330349, intron 2 of 2)	intron (NM_001330349, intron 2 of 2)	18577	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
52895	chr12	57211771	57212130	+	0	NA	exon (NM_002332, exon 87 of 89)	exon (NM_002332, exon 87 of 89)	-4844	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
124593	chr2	862921	863180	+	0	NA	intron (NR_033880, intron 1 of 3)	(CCTT)n|Simple_repeat|Simple_repeat	5376	NR_111963	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
193758	chr6	31343751	31344550	+	0	NA	Intergenic	MER21-int|LTR|ERVL	11166	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
186277	chr5	134539621	134540200	+	0	NA	intron (NM_001289985, intron 3 of 11)	intron (NM_001289985, intron 3 of 11)	13802	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
211402	chr7	105031051	105031350	+	0	NA	intron (NM_182931, intron 1 of 26)	AluSq2|SINE|Alu	16995	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
20868	chr1	202127771	202127930	+	0	NA	exon (NM_004767, exon 2 of 2)	exon (NM_004767, exon 2 of 2)	4933	NM_004767	9283		NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2|ETBRLP2	G protein-coupled receptor 37 like 1	protein-coding
183219	chr5	76299271	76299830	+	0	NA	intron (NM_014979, intron 10 of 12)	MIRb|SINE|MIR	-103735	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
97109	chr17	42491351	42491450	+	0	NA	intron (NM_001378535, intron 11 of 22)	AluY|SINE|Alu	-3373	NR_049845	100847030		NR_049845	ENSG00000264314	MIR548AT	-	microRNA 548at	ncRNA
132453	chr2	105860351	105860680	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	8668	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
201725	chr6	149787271	149787430	+	0	NA	intron (NM_001252050, intron 3 of 6)	intron (NM_001252050, intron 3 of 6)	37609	NM_001360456	5110		NM_005389	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
192190	chr6	17693271	17693830	+	0	NA	intron (NM_001278209, intron 1 of 22)	intron (NM_001278209, intron 1 of 22)	-12580	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
77206	chr15	80977571	80977830	+	0	NA	3' UTR (NM_015154, exon 3 of 3)	3' UTR (NM_015154, exon 3 of 3)	12119	NR_126327	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
52860	chr12	57125371	57126500	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2548	NM_002332	4035		NM_002332	ENSG00000123384	LRP1	A2MR|APOER|APR|CD91|DDH3|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5	LDL receptor related protein 1	protein-coding
122297	chr19	49103571	49104150	+	0	NA	intron (NM_003089, intron 7 of 9)	intron (NM_003089, intron 7 of 9)	-10510	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
43486	chr11	78325221	78325950	+	0	NA	intron (NM_080491, intron 1 of 9)	L3|LINE|CR1	16295	NM_012296	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
92743	chr17	14321251	14321780	+	0	NA	intron (NM_006041, intron 1 of 1)	intron (NM_006041, intron 1 of 1)	17775	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
76403	chr15	74633851	74634150	+	0	NA	intron (NM_001351378, intron 8 of 8)	MIR3|SINE|MIR	18164	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
93127	chr17	17721971	17722840	+	0	NA	intron (NM_030665, intron 1 of 5)	CpG	40947	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
104326	chr17	80957601	80958200	+	0	NA	intron (NM_020761, intron 29 of 33)	intron (NM_020761, intron 29 of 33)	13313	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
54585	chr12	92405621	92406850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-15296	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
27430	chr10	31707501	31707980	+	0	NA	Intergenic	Intergenic	201186	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
90839	chr17	2341171	2341330	+	0	NA	intron (NM_001346700, intron 1 of 22)	AluSq|SINE|Alu	3749	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
219080	chr8	65833651	65834000	+	0	NA	intron (NM_001242318, intron 1 of 12)	AluJb|SINE|Alu	8239	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
109581	chr19	905371	906300	+	0	NA	intron (NM_138774, intron 1 of 7)	intron (NM_138774, intron 1 of 7)	7384	NM_138774	91300		NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
187307	chr5	141609671	141609830	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	9250	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
111242	chr19	3519871	3520030	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	-3006	NM_001136197	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
19133	chr1	171537571	171538230	+	0	NA	intron (NM_015172, intron 15 of 33)	AluY|SINE|Alu	52370	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
198877	chr6	109451571	109452400	+	0	NA	intron (NM_022765, intron 6 of 24)	intron (NM_022765, intron 6 of 24)	3787	NM_022765	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
236052	chrX	56233621	56233880	+	0	NA	intron (NM_001324099, intron 1 of 3)	intron (NM_001324099, intron 1 of 3)	592	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
34930	chr11	430971	431850	+	0	NA	intron (NM_001347882, intron 6 of 21)	CpG	10601	NM_001347882	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
1673	chr1	3912771	3913130	+	0	NA	intron (NR_024455, intron 2 of 3)	intron (NR_024455, intron 2 of 3)	12546	NR_024455	100133612		NR_024455	ENSG00000236423	LINC01134	TLNC1	long intergenic non-protein coding RNA 1134	ncRNA
15237	chr1	149588451	149588750	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	4777	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
107797	chr18	51178421	51178680	+	0	NA	intron (NM_016626, intron 1 of 1)	intron (NM_016626, intron 1 of 1)	19131	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
220451	chr8	100383401	100383600	+	0	NA	TTS (NR_039681)	TTS (NR_039681)	737	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
178645	chr4	152385621	152385880	+	0	NA	intron (NM_033632, intron 2 of 11)	intron (NM_033632, intron 2 of 11)	-3221	NM_001013415	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
210404	chr7	99999551	100000230	+	0	NA	intron (NR_159960, intron 2 of 2)	AluJo|SINE|Alu	2200	NR_159959	105375423		NR_159959	ENSG00000286923	LOC105375423	-	uncharacterized LOC105375423	ncRNA
171448	chr3	196315171	196315330	+	0	NA	TTS (NR_037950)	TTS (NR_037950)	2990	NM_001351628	255758		NM_152773	ENSG00000213123	DYNLT2B	SRTD17|TCTEX1D2	dynein light chain Tctex-type 2B	protein-coding
237799	chrX	129905671	129906480	+	0	NA	promoter-TSS (NM_006649)	promoter-TSS (NM_006649)	-46	NM_001166221	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
119337	chr19	39954821	39955100	+	0	NA	Intergenic	L1MC5a|LINE|L1	-16045	NM_153001	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
22543	chr1	222466601	222466800	+	0	NA	Intergenic	AluSz6|SINE|Alu	81404	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
133892	chr2	130154051	130154450	+	0	NA	intron (NM_017951, intron 16 of 19)	intron (NM_017951, intron 16 of 19)	-9138	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
98870	chr17	48526751	48527730	+	0	NA	Intergenic	CpG	3771	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
68534	chr14	89201771	89201930	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	215383	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
179473	chr4	184476521	184477500	+	0	NA	Intergenic	Intergenic	-2460	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
81716	chr16	11258521	11259630	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-2893	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
80018	chr16	1929021	1930380	+	0	NA	Intergenic	CpG	-11285	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
118943	chr19	38822221	38822480	+	0	NA	intron (NM_001398, intron 3 of 9).2	LTR12C|LTR|ERV1	-9405	NM_006149	3960		NM_006149	ENSG00000171747	LGALS4	GAL4|L36LBP	galectin 4	protein-coding
129057	chr2	65069401	65070230	+	0	NA	intron (NM_015147, intron 2 of 6)	intron (NM_015147, intron 2 of 6)	13399	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
218193	chr8	42001371	42002150	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-49990	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
26808	chr10	23442621	23443230	+	0	NA	TTS (NM_001145373)	TTS (NM_001145373)	3850	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
206957	chr7	38264651	38265150	+	0	NA	intron (NM_001003806, intron 2 of 3)	intron (NM_001003806, intron 2 of 3)	8747	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
136959	chr2	190404251	190405250	+	0	NA	Intergenic	L2|LINE|L2	-2826	NM_001375989	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
140581	chr2	233358171	233358690	+	0	NA	intron (NM_152879, intron 1 of 29)	intron (NM_152879, intron 1 of 29)	3936	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
3909	chr1	17239471	17239730	+	0	NA	intron (NM_013358, intron 13 of 15).2	intron (NM_013358, intron 13 of 15).2	-9498	NM_016233	51702		NM_016233	ENSG00000142619	PADI3	PAD3|PDI3|UHS1	peptidyl arginine deiminase 3	protein-coding
128741	chr2	61905271	61906250	+	0	NA	exon (NM_152516, exon 1 of 3)	exon (NM_152516, exon 1 of 3)	118	NM_152516	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
102742	chr17	76259071	76259230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6198	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
167374	chr3	128791701	128792400	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	-54758	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
194149	chr6	32035401	32036300	+	0	NA	TTS (NM_001002029).4	TTS (NM_001002029).4	-2565	NM_001368144	1589		NM_000500	ENSG00000231852	CYP21A2	CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B	cytochrome P450 family 21 subfamily A member 2	protein-coding
69892	chr14	99415651	99415980	+	0	NA	intron (NM_032233, intron 6 of 12)	intron (NM_032233, intron 6 of 12)	65044	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
30030	chr10	73795651	73796200	+	0	NA	TTS (NR_038357)	TTS (NR_038357)	5474	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
219201	chr8	66651801	66652400	+	0	NA	intron (NM_025054, intron 1 of 2)	AluJb|SINE|Alu	15131	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
229254	chr9	116688721	116689180	+	0	NA	intron (NM_001379050, intron 1 of 1)	MER20|DNA|hAT-Charlie	1381	NM_001379050	22954		NM_012210	ENSG00000119401	TRIM32	BBS11|HT2A|LGMD2H|LGMDR8|TATIP	tripartite motif containing 32	protein-coding
150669	chr21	43443271	43443430	+	0	NA	Intergenic	Intergenic	-3251	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
69923	chr14	99522571	99522750	+	0	NA	intron (NM_001144995, intron 2 of 5)	intron (NM_001144995, intron 2 of 5)	41251	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
70463	chr14	102064401	102065030	+	0	NA	Intergenic	AluSz6|SINE|Alu	22329	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
173469	chr4	8857321	8857780	+	0	NA	intron (NM_001306142, intron 1 of 1)	CpG	14289	NM_018942	3166		NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
136609	chr2	178530701	178530900	+	0	NA	exon (NM_001267550, exon 358 of 363)	exon (NM_001267550, exon 358 of 363)	7609	NR_038271	100506866		NR_038271	ENSG00000237298	TTN-AS1	-	TTN antisense RNA 1	ncRNA
161870	chr3	45889321	45889780	+	0	NA	intron (NM_006641, intron 1 of 1)	intron (NM_006641, intron 1 of 1)	3007	NM_006641	10803		NM_006641	ENSG00000173585	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	C-C motif chemokine receptor 9	protein-coding
148109	chr20	63409521	63409980	+	0	NA	intron (NM_172106, intron 14 of 15)	intron (NM_172106, intron 14 of 15)	-48401	NR_046317	1137		NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	cholinergic receptor nicotinic alpha 4 subunit	protein-coding
206607	chr7	35814801	35815000	+	0	NA	intron (NM_001788, intron 1 of 12)	AluY|SINE|Alu	13681	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
235317	chrX	42945721	42946080	+	0	NA	Intergenic	L2a|LINE|L2	-167737	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
161345	chr3	40313551	40313850	+	0	NA	Intergenic	Intergenic	3993	NM_005875	10289		NM_005875	ENSG00000114784	EIF1B	GC20	eukaryotic translation initiation factor 1B	protein-coding
82323	chr16	15727871	15728230	+	0	NA	intron (NM_022844, intron 27 of 41).2	AluSz|SINE|Alu	77805	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
91143	chr17	3752251	3752680	+	0	NA	intron (NM_002208, intron 14 of 30)	MIRc|SINE|MIR	28562	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
194092	chr6	31900851	31900950	+	0	NA	promoter-TSS (NM_001178063).7	promoter-TSS (NM_001178063).7	-99	NM_001178063	717		NM_000063	ENSG00000166278	C2	ARMD14|CO2	complement C2	protein-coding
105319	chr17	82579621	82580550	+	0	NA	intron (NM_004514, intron 4 of 8)	intron (NM_004514, intron 4 of 8)	60353	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
26101	chr10	13301571	13303080	+	0	NA	Intergenic	CpG	-2195	NM_001323083	5264		NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
227402	chr9	89532471	89533180	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	-34712	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
84918	chr16	31225921	31227030	+	0	NA	3' UTR (NM_001008274, exon 7 of 7)	3' UTR (NM_001008274, exon 7 of 7)	-9340	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
82475	chr16	17224621	17225280	+	0	NA	intron (NM_022166, intron 3 of 11)	MER58A|DNA|hAT-Charlie	90446	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
40657	chr11	64740471	64740930	+	0	NA	intron (NM_001098670, intron 5 of 16)	intron (NM_001098670, intron 5 of 16)	3442	NM_001098671	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
49548	chr12	26748721	26749000	+	0	NA	intron (NM_002223, intron 2 of 56)	intron (NM_002223, intron 2 of 56)	84334	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
55530	chr12	105324951	105325280	+	0	NA	intron (NR_131986, intron 1 of 2)	LTR16B1|LTR|ERVL	1902	NR_131986	105369954		NR_131986	ENSG00000257642	C12orf75-AS1	KCCAT198	C12orf75 antisense RNA 1	ncRNA
38079	chr11	35197071	35197700	+	0	NA	intron (NM_000610, intron 6 of 17)	intron (NM_000610, intron 6 of 17)	34435	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
120275	chr19	43333071	43333230	+	0	NA	Intergenic	Intergenic	-15906	NR_026881	23574		NR_026881		PRG1	-	p53-responsive gene 1	ncRNA
150580	chr21	43173101	43173850	+	0	NA	TTS (NM_001363766).2	TTS (NM_001363766).2	3239	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
112486	chr19	6420571	6422450	+	0	NA	intron (NM_001366300, intron 3 of 19)	intron (NM_001366300, intron 3 of 19)	3301	NM_003685	8570		NM_003685	ENSG00000088247	KHSRP	FBP2|FUBP2|KSRP|p75	KH-type splicing regulatory protein	protein-coding
46118	chr11	122978921	122979400	+	0	NA	intron (NM_001098169, intron 2 of 2)	intron (NM_001098169, intron 2 of 2)	2674	NM_001098169	390259		NM_001098169	ENSG00000188909	BSX	BSX1	brain specific homeobox	protein-coding
124020	chr19	55478871	55479350	+	0	NA	intron (NM_033113, intron 1 of 2)	L2a|LINE|L2	2493	NM_033113	89887		NM_033113	ENSG00000197483	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
101008	chr17	64708551	64709650	+	0	NA	Intergenic	Intergenic	-46793	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
180780	chr5	32177301	32177500	+	0	NA	Intergenic	AluSx|SINE|Alu	-3081	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
227174	chr9	87324651	87324830	+	0	NA	Intergenic	Intergenic	-172488	NM_001288731	1612		NM_004938	ENSG00000196730	DAPK1	DAPK|ROCO3	death associated protein kinase 1	protein-coding
31051	chr10	88973821	88974080	+	0	NA	intron (NM_001320855, intron 1 of 8)	AluSx|SINE|Alu	-16848	NR_028035	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
35059	chr11	599401	599800	+	0	NA	intron (NM_001286582, intron 9 of 17)	intron (NM_001286582, intron 9 of 17)	16350	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
235084	chrX	40201271	40201880	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-24246	NM_001123383	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
225967	chr9	41124521	41124830	+	0	NA	non-coding (NR_147036, exon 1 of 7)	non-coding (NR_147036, exon 1 of 7)	139	NR_147036	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
152665	chr22	21582871	21583680	+	0	NA	intron (NR_046082, intron 1 of 3)	intron (NR_046082, intron 1 of 3)	15561	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
104688	chr17	81517251	81518450	+	0	NA	Intergenic	Intergenic	-5051	NR_037688	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
211927	chr7	112458451	112459150	+	0	NA	intron (NR_120333, intron 4 of 11)	intron (NR_120333, intron 4 of 11)	6742	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
182103	chr5	56056051	56056430	+	0	NA	Intergenic	Intergenic	61073	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
72855	chr15	40255251	40255550	+	0	NA	intron (NM_001128628, intron 3 of 10)	intron (NM_001128628, intron 3 of 10)	2222	NM_001276717	56924		NM_020168	ENSG00000137843	PAK6	PAK5	p21 (RAC1) activated kinase 6	protein-coding
73335	chr15	41971221	41971900	+	0	NA	intron (NM_139265, intron 1 of 5)	intron (NM_139265, intron 1 of 5)	997	NM_139265	30844		NM_139265	ENSG00000103966	EHD4	PAST4	EH domain containing 4	protein-coding
66908	chr14	65290701	65291100	+	0	NA	Intergenic	L2a|LINE|L2	44283	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
46811	chr11	130339151	130339650	+	0	NA	intron (NR_148980, intron 1 of 6)	LTR49-int|LTR|ERV1	24407	NR_148980	646383		NM_001039787	ENSG00000175773	ZBTB44-DT	-	ZBTB44 divergent transcript	ncRNA
115509	chr19	15420801	15421000	+	0	NA	3' UTR (NM_001330395, exon 8 of 8)	3' UTR (NM_001330395, exon 8 of 8)	-1912	NM_001291478	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
186299	chr5	134568421	134569000	+	0	NA	intron (NM_001289985, intron 9 of 11)	intron (NM_001289985, intron 9 of 11)	42602	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
221145	chr8	119509671	119509850	+	0	NA	Intergenic	LTR16A|LTR|ERVL	83219	NR_045555	5168		NM_006209	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
104415	chr17	81060701	81060900	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	3066	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
29992	chr10	73756071	73756230	+	0	NA	intron (NM_198597, intron 3 of 22)	AluSx|SINE|Alu	11778	NM_198597	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
105013	chr17	82035701	82036380	+	0	NA	exon (NM_001195218, exon 8 of 8)	exon (NM_001195218, exon 8 of 8)	1657	NM_016286	51181		NM_016286	ENSG00000169738	DCXR	DCR|HCR2|HCRII|KIDCR|P34H|PNTSU|SDR20C1|XR	dicarbonyl and L-xylulose reductase	protein-coding
218342	chr8	42895551	42898150	+	0	NA	promoter-TSS (NM_001160223)	promoter-TSS (NM_001160223)	-127	NM_001160223	81790		NM_030954	ENSG00000120925	RNF170	ADSA|SNAX1|SPG85	ring finger protein 170	protein-coding
50559	chr12	48105421	48106980	+	0	NA	promoter-TSS (NR_051992)	promoter-TSS (NR_051992)	84	NM_001354736	5213		NM_000289	ENSG00000152556	PFKM	ATP-PFK|GSD7|PFK-1|PFK-A|PFK1|PFKA|PFKX|PPP1R122	phosphofructokinase, muscle	protein-coding
122279	chr19	49071271	49072130	+	0	NA	intron (NM_031886, intron 1 of 1)	intron (NM_031886, intron 1 of 1)	1241	NM_031886	3743		NM_031886	ENSG00000104848	KCNA7	HAK6|KV1.7	potassium voltage-gated channel subfamily A member 7	protein-coding
29823	chr10	72318171	72318700	+	0	NA	Intergenic	L2b|LINE|L2	36484	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
86447	chr16	66924801	66926080	+	0	NA	promoter-TSS (NM_001128850)	promoter-TSS (NM_001128850)	95	NM_004165	6236		NM_004165	ENSG00000166592	RRAD	RAD|RAD1|REM3	RRAD, Ras related glycolysis inhibitor and calcium channel regulator	protein-coding
95850	chr17	38822621	38823480	+	0	NA	intron (NM_017748, intron 1 of 9)	AluY|SINE|Alu	2271	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
2271	chr1	8929251	8929550	+	0	NA	Intergenic	AluJr|SINE|Alu	-16468	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
210172	chr7	98420951	98421280	+	0	NA	Intergenic	Intergenic	-20025	NM_018842	55971		NM_018842	ENSG00000006453	BAIAP2L1	IRTKS	BAR/IMD domain containing adaptor protein 2 like 1	protein-coding
121995	chr19	48516401	48516830	+	0	NA	Intergenic	L2c|LINE|L2	-3426	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
42121	chr11	67613501	67614830	+	0	NA	intron (NR_033791, intron 4 of 4)	intron (NR_033791, intron 4 of 4)	1499	NR_033791	390213		NR_033791		DOC2GP	-	double C2 domain gamma, pseudogene	pseudo
142800	chr20	13786151	13786250	+	0	NA	intron (NM_024120, intron 1 of 10)	intron (NM_024120, intron 1 of 10)	1172	NR_147982	79133		NM_024120	ENSG00000101247	NDUFAF5	C20orf7|MC1DN16|bA526K24.2|dJ842G6.1	NADH:ubiquinone oxidoreductase complex assembly factor 5	protein-coding
85688	chr16	56449151	56449450	+	0	NA	intron (NM_007006, intron 1 of 6)	L2b|LINE|L2	2032	NM_007006	11051		NM_007006	ENSG00000167005	NUDT21	CFIM25|CPSF5	nudix hydrolase 21	protein-coding
17016	chr1	156044851	156045550	+	0	NA	intron (NM_020131, intron 5 of 10)	intron (NM_020131, intron 5 of 10)	8598	NM_001304342	56893		NM_020131	ENSG00000160803	UBQLN4	A1U|A1Up|C1orf6|CIP75|UBIN	ubiquilin 4	protein-coding
234718	chrX	21590051	21590640	+	0	NA	intron (NM_001168647, intron 12 of 20)	MIRc|SINE|MIR	67985	NM_153270	257240		NM_153270	ENSG00000185915	KLHL34	-	kelch like family member 34	protein-coding
42828	chr11	72838421	72838880	+	0	NA	3' UTR (NM_014824, exon 20 of 20)	3' UTR (NM_014824, exon 20 of 20)	24239	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
166429	chr3	113750121	113750380	+	0	NA	intron (NM_001690, intron 1 of 14)	AluSc8|SINE|Alu	3215	NM_001690	523		NM_001690	ENSG00000114573	ATP6V1A	ARCL2D|ATP6A1|ATP6V1A1|DEE93|HO68|IECEE3|VA68|VPP2|Vma1	ATPase H+ transporting V1 subunit A	protein-coding
152801	chr22	21841551	21841850	+	0	NA	intron (NM_138957, intron 1 of 7)	L1MC3|LINE|L1	25945	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
135287	chr2	160115051	160115150	+	0	NA	intron (NM_001282355, intron 10 of 12)	L1HS|LINE|L1	-52485	NM_007366	22925		NM_007366	ENSG00000153246	PLA2R1	CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R	phospholipase A2 receptor 1	protein-coding
205289	chr7	10888871	10889550	+	0	NA	Intergenic	Intergenic	50943	NM_002489	4697		NM_002489	ENSG00000189043	NDUFA4	CI-9k|CI-MLRQ|COXFA4|MC4DN21|MISTR1|MLRQ|MRCAF1	NDUFA4 mitochondrial complex associated	protein-coding
197070	chr6	53735801	53736030	+	0	NA	Intergenic	L2b|LINE|L2	-59090	NM_018214	55227		NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
29781	chr10	72271801	72272000	+	0	NA	Intergenic	AluY|SINE|Alu	-2024	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
136731	chr2	181235301	181235500	+	0	NA	intron (NR_130784, intron 2 of 4)	intron (NR_130784, intron 2 of 4)	70252	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
99996	chr17	57794671	57794850	+	0	NA	Intergenic	AluSq2|SINE|Alu	-49461	NM_001282544	101927581		NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
78039	chr15	90031101	90031780	+	0	NA	intron (NM_198526, intron 1 of 4)	MER5A1|DNA|hAT-Charlie	24685	NR_036135	100422841		NR_036135	ENSG00000265871	MIR3174	-	microRNA 3174	ncRNA
57386	chr12	121814321	121814900	+	0	NA	exon (NM_001353345, exon 7 of 17)	exon (NM_001353345, exon 7 of 17)	10601	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
3932	chr1	17477301	17477650	+	0	NA	Intergenic	Intergenic	-37798	NM_018715	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
203428	chr7	337251	337600	+	0	NA	Intergenic	Intergenic	-42000	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
20378	chr1	198102401	198103150	+	0	NA	Intergenic	Intergenic	-54223	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
214433	chr7	149869301	149870450	+	0	NA	intron (NR_027040, intron 3 of 3)	intron (NR_027040, intron 3 of 3)	-3089	NM_001367792	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
95418	chr17	36088051	36088980	+	0	NA	non-coding (NR_111964, exon 3 of 3)	non-coding (NR_111964, exon 3 of 3)	1183	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
189796	chr5	176814201	176814400	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	3741	NM_133369	90249		NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
61605	chr13	73230751	73231050	+	0	NA	Intergenic	Intergenic	171895	NM_001730	688		NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	KLF transcription factor 5	protein-coding
215035	chr7	152453221	152453650	+	0	NA	Intergenic	AluY|SINE|Alu	-10689	NR_027387	100128822		NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
195212	chr6	36126721	36127430	+	0	NA	Intergenic	MER90a|LTR|ERV1	-3438	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
225355	chr9	34662821	34663610	+	0	NA	promoter-TSS (NM_006664)	promoter-TSS (NM_006664)	-558	NM_006664	10850		NM_006664	ENSG00000213927	CCL27	ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27	C-C motif chemokine ligand 27	protein-coding
62633	chr13	101127721	101128030	+	0	NA	intron (NM_052867, intron 17 of 43)	intron (NM_052867, intron 17 of 43)	-183511	NR_047015	100874161		NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA
87290	chr16	70061601	70061800	+	0	NA	intron (NR_003610, intron 1 of 25)	intron (NR_003610, intron 1 of 25)	4248	NR_003610	283970		NM_199134	ENSG00000196696	PDXDC2P-NPIPB14P	-	PDXDC2P-NPIPB14P readthrough, transcribed pseudogene	pseudo
19880	chr1	183628371	183628730	+	0	NA	intron (NM_005717, intron 3 of 3)	L2c|LINE|L2	7233	NM_005717	10092		NM_005717	ENSG00000162704	ARPC5	ARC16|IMD113|dJ127C7.3|p16-Arc	actin related protein 2/3 complex subunit 5	protein-coding
28644	chr10	59872301	59872500	+	0	NA	intron (NM_005436, intron 1 of 8)	intron (NM_005436, intron 1 of 8)	34156	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
18737	chr1	167477221	167477530	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	41154	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
198908	chr6	109753151	109753250	+	0	NA	intron (NM_014845, intron 10 of 22)	5S|rRNA|rRNA	61904	NM_014845	9896		NM_014845	ENSG00000112367	FIG4	ALS11|BOP|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1	FIG4 phosphoinositide 5-phosphatase	protein-coding
132188	chr2	101832071	101832430	+	0	NA	intron (NM_001384572, intron 6 of 29)	intron (NM_001384572, intron 6 of 29)	133985	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
195983	chr6	41975351	41975880	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-33767	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
52370	chr12	55681221	55681680	+	0	NA	promoter-TSS (NM_152637)	promoter-TSS (NM_152637)	-286	NM_152637	196410		NM_152637	ENSG00000170439	TMT1B	ALDI|METTL7B	thiol methyltransferase 1B	protein-coding
109306	chr19	571901	573800	+	0	NA	intron (NM_001322243, intron 1 of 7)	CpG	254	NM_198589	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
31826	chr10	99530901	99531300	+	0	NA	promoter-TSS (NR_120618)	promoter-TSS (NR_120618)	77	NR_120618	101927324		NR_120618	ENSG00000257582	LINC01475	-	long intergenic non-protein coding RNA 1475	ncRNA
82093	chr16	14354121	14354880	+	0	NA	Intergenic	Intergenic	15766	NR_131191	105447648		NR_131191	ENSG00000260009	LINC02130	-	long intergenic non-protein coding RNA 2130	ncRNA
176981	chr4	104942951	104943750	+	0	NA	Intergenic	MER74B|LTR|ERVL	-202525	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
159568	chr3	14922171	14922330	+	0	NA	intron (NM_152536, intron 14 of 19)	intron (NM_152536, intron 14 of 19)	25255	NR_046252	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
70070	chr14	100148921	100149530	+	0	NA	exon (NM_206918, exon 2 of 3)	exon (NM_206918, exon 2 of 3)	10420	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
87265	chr16	69986971	69987330	+	0	NA	intron (NR_003610, intron 20 of 25)	AluSx1|SINE|Alu	36037	NM_001370523	348174		NM_182619	ENSG00000157322	CLEC18A	MRCL|MRCL1|MRLP2	C-type lectin domain family 18 member A	protein-coding
123975	chr19	55421051	55422130	+	0	NA	Intergenic	L1MC4|LINE|L1	-13802	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
156022	chr22	39951571	39953150	+	0	NA	intron (NM_001291826, intron 2 of 6)	intron (NM_001291826, intron 2 of 6)	5543	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
198658	chr6	107822971	107823450	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	1103	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
191455	chr6	10741601	10741800	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-6059	NM_001127711	81853		NM_030969	ENSG00000137210	TMEM14B	-	transmembrane protein 14B	protein-coding
194176	chr6	32114051	32114880	+	0	NA	TTS (NM_004381)	TTS (NM_004381)	-5127	NM_001365276	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
230595	chr9	128573701	128573930	+	0	NA	intron (NM_001375310, intron 3 of 57)	AluSg|SINE|Alu	21228	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
144948	chr20	37071221	37072430	+	0	NA	intron (NM_183404, intron 2 of 20)	MSTB|LTR|ERVL-MaLR	24172	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
152307	chr22	20335271	20335830	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-2480	NR_165637	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
14484	chr1	144533321	144533680	+	0	NA	Intergenic	LTR51|LTR|ERV1	18443	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
139015	chr2	218386971	218388030	+	0	NA	intron (NM_000578, intron 6 of 14)	MIR|SINE|MIR	5227	NM_000578	6556		NM_000578	ENSG00000018280	SLC11A1	LSH|NRAMP|NRAMP1	solute carrier family 11 member 1	protein-coding
5467	chr1	25634271	25634630	+	0	NA	intron (NM_020379, intron 1 of 11)	L1ME2|LINE|L1	17659	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
23934	chr1	235098751	235099050	+	0	NA	Intergenic	AluJr|SINE|Alu	29037	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
227620	chr9	92770151	92770650	+	0	NA	Intergenic	Intergenic	-5567	NM_001003800	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
36512	chr11	6416671	6416980	+	0	NA	intron (NM_145689, intron 1 of 13)	AluSx|SINE|Alu	2269	NM_001164	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
93621	chr17	19157851	19158580	+	0	NA	intron (NR_160286, intron 3 of 3).2	intron (NR_160286, intron 3 of 3).2	4409	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
127126	chr2	37658901	37659100	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	12642	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
4741	chr1	23426171	23426330	+	0	NA	Intergenic	Intergenic	-1502	NM_003196	6920		NM_003196	ENSG00000204219	TCEA3	TFIIS|TFIIS.H	transcription elongation factor A3	protein-coding
200894	chr6	139030151	139030300	+	0	NA	intron (NM_021243, intron 1 of 2)	L1MA6|LINE|L1	1480	NM_021243	58527		NM_021243	ENSG00000146386	ABRACL	C6orf115|Costars|HSPC280|PRO2013	ABRA C-terminal like	protein-coding
181217	chr5	39174771	39175530	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	44413	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
210068	chr7	96304201	96304400	+	0	NA	intron (NM_001160210, intron 1 of 17)	intron (NM_001160210, intron 1 of 17)	17798	NM_014251	10165		NM_014251	ENSG00000004864	SLC25A13	ARALAR2|CITRIN|CTLN2|NICCD	solute carrier family 25 member 13	protein-coding
133725	chr2	127382721	127383280	+	0	NA	intron (NM_001371911, intron 1 of 16)	MSTB|LTR|ERVL-MaLR	4975	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
207088	chr7	39979471	39980250	+	0	NA	intron (NM_003718, intron 1 of 13)	MLT1D|LTR|ERVL-MaLR	29500	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
47997	chr12	6917821	6918900	+	0	NA	intron (NM_001975, intron 7 of 11)	AluYc|SINE|Alu	3780	NM_001975	2026		NM_001975	ENSG00000111674	ENO2	HEL-S-279|NSE	enolase 2	protein-coding
41844	chr11	67122271	67123400	+	0	NA	intron (NM_012308, intron 2 of 20)	AluY|SINE|Alu	3572	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
140306	chr2	232447151	232447330	+	0	NA	Intergenic	Intergenic	-8913	NM_001631	248		NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
216636	chr8	22108841	22110630	+	0	NA	promoter-TSS (NM_024815)	promoter-TSS (NM_024815)	-316	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
74970	chr15	63833171	63835280	+	0	NA	promoter-TSS (NM_003922)	promoter-TSS (NM_003922)	-277	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
134394	chr2	136422671	136422830	+	0	NA	Intergenic	L1MB2|LINE|L1	-304601	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
116130	chr19	17331201	17331880	+	0	NA	intron (NM_020959, intron 5 of 17)	intron (NM_020959, intron 5 of 17)	3315	NM_020959	57719		NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
13361	chr1	113871511	113872730	+	0	NA	promoter-TSS (NM_001193431)	promoter-TSS (NM_001193431)	-361	NM_001193431	26191		NM_012411	ENSG00000134242	PTPN22	LYP|LYP1|LYP2|PEP|PTPN22.5|PTPN22.6|PTPN8	protein tyrosine phosphatase non-receptor type 22	protein-coding
161521	chr3	42598871	42599050	+	0	NA	intron (NM_001201572, intron 1 of 6)	(TATAGATC)n|Simple_repeat|Simple_repeat	-1726	NM_005385	4820		NM_005385	ENSG00000114857	NKTR	CypNK|p104	natural killer cell triggering receptor	protein-coding
188287	chr5	151138751	151140330	+	0	NA	intron (NM_001193544, intron 2 of 24)	intron (NM_001193544, intron 2 of 24)	2144	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
36388	chr11	4000051	4000150	+	0	NA	intron (NM_001382568, intron 2 of 11)	L1PA3|LINE|L1	-94585	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
20667	chr1	200302121	200302880	+	0	NA	Intergenic	Intergenic	71292	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
56682	chr12	120010621	120011180	+	0	NA	intron (NR_147894, intron 3 of 8)	intron (NR_147894, intron 3 of 8)	21056	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
180852	chr5	32592801	32593250	+	0	NA	intron (NM_006713, intron 3 of 4)	AluJb|SINE|Alu	7468	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
68115	chr14	75487071	75487980	+	0	NA	Intergenic	Intergenic	-34944	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
7584	chr1	35182001	35182480	+	0	NA	TTS (NM_005066)	TTS (NM_005066)	10905	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
144660	chr20	36153221	36153480	+	0	NA	intron (NR_147703, intron 2 of 3)	intron (NR_147703, intron 2 of 3)	-1390	NM_012156	2036		NM_012156	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1 like 1	protein-coding
89954	chr16	89763251	89763700	+	0	NA	intron (NM_001286167, intron 28 of 42)	AluYg6|SINE|Alu	41938	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
107542	chr18	48675251	48675930	+	0	NA	intron (NM_014772, intron 6 of 11)	intron (NM_014772, intron 6 of 11)	4990	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
163890	chr3	52515901	52516100	+	0	NA	intron (NM_015136, intron 37 of 68)	intron (NM_015136, intron 37 of 68)	17857	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
42730	chr11	72693521	72694080	+	0	NA	exon (NM_001135190, exon 25 of 31)	exon (NM_001135190, exon 25 of 31)	-6674	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
210096	chr7	97145171	97145330	+	0	NA	intron (NM_020186, intron 1 of 1)	intron (NM_020186, intron 1 of 1)	27552	NM_020186	57001		NM_020186	ENSG00000196636	SDHAF3	ACN9|DC11|LYRM10|Sdh7	succinate dehydrogenase complex assembly factor 3	protein-coding
102411	chr17	75621171	75621530	+	0	NA	exon (NM_001309242, exon 50 of 63)	exon (NM_001309242, exon 50 of 63)	-12084	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
128412	chr2	55235901	55236450	+	0	NA	TTS (NM_001321005)	TTS (NM_001321005)	2011	NR_039624	100616345		NR_039624	ENSG00000283795	MIR4426	-	microRNA 4426	ncRNA
83749	chr16	28688251	28688880	+	0	NA	promoter-TSS (NM_001199142).2	promoter-TSS (NM_001199142).2	7	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
142214	chr20	3051301	3052100	+	0	NA	Intergenic	Intergenic	5648	NM_030811	64949		NM_030811	ENSG00000125901	MRPS26	C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3|mS26	mitochondrial ribosomal protein S26	protein-coding
190141	chr5	178106101	178106500	+	0	NA	Intergenic	AluJo|SINE|Alu	-7232	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
48905	chr12	12560771	12561780	+	0	NA	intron (NM_030640, intron 1 of 6)	intron (NM_030640, intron 1 of 6)	1588	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
62354	chr13	99203471	99203930	+	0	NA	intron (NR_026644, intron 1 of 8)	L2a|LINE|L2	2846	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
63834	chr14	21502021	21502480	+	0	NA	intron (NM_019852, intron 3 of 10)	AluJr|SINE|Alu	9090	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
93570	chr17	19094451	19094750	+	0	NA	intron (NR_164158, intron 3 of 3)	intron (NR_164158, intron 3 of 3)	5139	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
157103	chr22	42636101	42636300	+	0	NA	intron (NM_001129819, intron 2 of 8)	AluJb|SINE|Alu	4401	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
187665	chr5	143197451	143197550	+	0	NA	intron (NM_001349547, intron 20 of 21)	L1ME3B|LINE|L1	5000	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
235536	chrX	47231701	47232080	+	0	NA	Intergenic	Intergenic	-1119	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
144589	chr20	35793051	35793350	+	0	NA	intron (NM_016436, intron 1 of 17)	L2c|LINE|L2	21185	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
154661	chr22	36349771	36349930	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	38117	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
53228	chr12	62330551	62331250	+	0	NA	intron (NM_001351164, intron 6 of 21)	AluJo|SINE|Alu	70496	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
216114	chr8	11282721	11282980	+	0	NA	Intergenic	Intergenic	-1966	NM_015458	66036		NM_015458	ENSG00000104643	MTMR9	C8orf9|LIP-STYX|MTMR8	myotubularin related protein 9	protein-coding
121482	chr19	47124421	47124680	+	0	NA	Intergenic	AluYm1|SINE|Alu	-6285	NM_001145713	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
8844	chr1	43352271	43352430	+	0	NA	intron (NM_005373, intron 11 of 11)	intron (NM_005373, intron 11 of 11)	-6631	NM_001255	991		NM_001255	ENSG00000117399	CDC20	CDC20A|OOMD14|OZEMA14|bA276H19.3|p55CDC	cell division cycle 20	protein-coding
235811	chrX	49209571	49209930	+	0	NA	exon (NM_005183, exon 41 of 48)	exon (NM_005183, exon 41 of 48)	-9557	NM_003179	6855		NM_003179	ENSG00000102003	SYP	MRX96|MRXSYP|XLID96	synaptophysin	protein-coding
39142	chr11	50297871	50298430	+	0	NA	intron (NR_003034, intron 1 of 5)	CpG	312	NR_003034	441601		NR_003034	ENSG00000291108	SEPTIN7P11	-	septin 7 pseudogene 11	pseudo
92784	chr17	15833021	15833280	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-15408	NR_110839	101928567		NR_110839		LINC02087	-	long intergenic non-protein coding RNA 2087	ncRNA
44012	chr11	94897371	94897630	+	0	NA	Intergenic	Intergenic	76056	NM_016403	51503		NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
122246	chr19	49020451	49020550	+	0	NA	Intergenic	Intergenic	-1016	NR_073552	101059948		NM_001396011	ENSG00000268655	SAXO3	-	stabilizer of axonemal microtubules 3	protein-coding
154805	chr22	36976701	36977700	+	0	NA	Intergenic	LTR78B|LTR|ERV1	11952	NR_038954	100506241		NR_038954	ENSG00000215403	LL22NC01-81G9.3	-	uncharacterized protein FLJ39582-like	ncRNA
189768	chr5	176650451	176651200	+	0	NA	intron (NM_001366492, intron 1 of 6)	intron (NM_001366492, intron 1 of 6)	3341	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
156944	chr22	42328001	42328200	+	0	NA	Intergenic	Intergenic	41108	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
206365	chr7	30548801	30549150	+	0	NA	non-coding (NR_038889, exon 7 of 7)	non-coding (NR_038889, exon 7 of 7)	28804	NR_038889	401320		NR_038889		GARS1-DT	GARS-DT	GARS1 divergent transcript	ncRNA
33423	chr10	118731971	118732130	+	0	NA	intron (NM_153810, intron 1 of 8)	L2|LINE|L2	22920	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
165155	chr3	72177621	72177880	+	0	NA	Intergenic	Intergenic	26493	NR_038221	201617		NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
224459	chr9	15507001	15507600	+	0	NA	intron (NM_001317898, intron 2 of 10)	MER113|DNA|hAT-Charlie	2989	NM_021144	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
60102	chr13	36848671	36848830	+	0	NA	exon (NM_001378621, exon 6 of 6)	exon (NM_001378621, exon 6 of 6)	29528	NM_000538	5994		NM_000538	ENSG00000133111	RFXAP	-	regulatory factor X associated protein	protein-coding
104293	chr17	80870071	80870780	+	0	NA	intron (NM_001163034, intron 13 of 29)	intron (NM_001163034, intron 13 of 29)	-64793	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
187801	chr5	146340571	146340750	+	0	NA	3' UTR (NM_002700, exon 2 of 2)	3' UTR (NM_002700, exon 2 of 2)	1821	NM_002700	5459		NM_002700	ENSG00000091010	POU4F3	BRN3C|DFNA15|DFNA42|DFNA52	POU class 4 homeobox 3	protein-coding
131872	chr2	98713651	98714050	+	0	NA	intron (NM_012214, intron 2 of 15)	L1MC4a|LINE|L1	17282	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
33375	chr10	117371821	117372180	+	0	NA	intron (NM_173791, intron 1 of 4)	L2a|LINE|L2	3440	NM_173791	118987		NM_173791	ENSG00000165650	PDZD8	IDDADF|PDZK8	PDZ domain containing 8	protein-coding
63017	chr13	112725421	112725880	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	29081	NR_109811	100874205		NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
141261	chr2	239929251	239929730	+	0	NA	intron (NR_136158, intron 7 of 10)	intron (NR_136158, intron 7 of 10)	13604	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
198371	chr6	105458851	105459850	+	0	NA	Intergenic	Intergenic	-56268	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
73213	chr15	41567501	41568230	+	0	NA	intron (NM_006293, intron 7 of 18)	L2a|LINE|L2	7893	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
159596	chr3	15118521	15119400	+	0	NA	Intergenic	AluY|SINE|Alu	-19803	NR_126155	64145		NM_022340	ENSG00000131381	RBSN	Rabenosyn-5|ZFYVE20	rabenosyn, RAB effector	protein-coding
119516	chr19	40530321	40530850	+	0	NA	promoter-TSS (NM_025213)	promoter-TSS (NM_025213)	94	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
151260	chr21	45326151	45326450	+	0	NA	Intergenic	Intergenic	15690	NR_103811	388830		NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
196702	chr6	44929571	44929730	+	0	NA	intron (NM_001350324, intron 10 of 11)	intron (NM_001350324, intron 10 of 11)	268120	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
101464	chr17	67464721	67464980	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSx|SINE|Alu	-6639	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
238463	chrX	153056221	153056680	+	0	NA	promoter-TSS (NM_013364)	promoter-TSS (NM_013364)	-20	NM_013364	29944		NM_013364	ENSG00000183837	PNMA3	MA3|MA5	PNMA family member 3	protein-coding
181030	chr5	35880501	35880900	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	23809	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
119831	chr19	41361051	41361350	+	0	NA	intron (NM_030578, intron 2 of 3)	intron (NM_030578, intron 2 of 3)	-2747	NM_001369864	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
40912	chr11	65188201	65188400	+	0	NA	intron (NM_001198868, intron 8 of 21)	intron (NM_001198868, intron 8 of 21)	6372	NM_005186	823		NM_005186	ENSG00000014216	CAPN1	CANP|CANP1|CANPL1|SPG76|muCANP|muCL	calpain 1	protein-coding
102597	chr17	75902821	75903230	+	0	NA	intron (NM_032478, intron 2 of 8)	intron (NM_032478, intron 2 of 8)	1859	NM_032478	64978		NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3|mL38	mitochondrial ribosomal protein L38	protein-coding
232599	chr9	136424421	136424880	+	0	NA	TTS (NM_001282946)	TTS (NM_001282946)	13992	NM_015160	23203		NM_015160	ENSG00000165688	PMPCA	Alpha-MPP|CLA1|CPD3|INPP5E|MAS2|P-55|SCAR2	peptidase, mitochondrial processing subunit alpha	protein-coding
88897	chr16	87765201	87766880	+	0	NA	promoter-TSS (NM_001351938)	promoter-TSS (NM_001351938)	-54	NM_001184856	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
119385	chr19	40223301	40224100	+	0	NA	intron (NM_024877, intron 3 of 4)	MIRb|SINE|MIR	2989	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
151954	chr22	19125871	19126650	+	0	NA	Intergenic	Intergenic	-3806	NM_001173533	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
99762	chr17	51029351	51031300	+	0	NA	intron (NM_001130527, intron 5 of 29)	intron (NM_001130527, intron 5 of 29)	16553	NM_001251971	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
178720	chr4	152784871	152785350	+	0	NA	intron (NM_001025593, intron 1 of 7)	intron (NM_001025593, intron 1 of 7)	5156	NM_001025595	27236		NM_014447	ENSG00000164144	ARFIP1	HSU52521	ADP ribosylation factor interacting protein 1	protein-coding
233179	chr9	137192571	137192930	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	4074	NM_003731	8636		NM_003731	ENSG00000176101	SSNA1	N14|NA-14|NA14	SS nuclear autoantigen 1	protein-coding
103177	chr17	77440811	77442150	+	0	NA	intron (NM_001293696, intron 1 of 9)	MIRc|SINE|MIR	-9269	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
236117	chrX	57313721	57314050	+	0	NA	intron (NM_001353841, intron 3 of 9)	L1PA7|LINE|L1	27031	NR_148564	158584		NM_174912	ENSG00000165591	FAAH2	AMDD	fatty acid amide hydrolase 2	protein-coding
106119	chr18	9189551	9189650	+	0	NA	intron (NM_001204056, intron 2 of 11)	Tigger1|DNA|TcMar-Tigger	52037	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
74603	chr15	60580301	60581430	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	11661	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
8078	chr1	39024801	39025000	+	0	NA	Intergenic	Intergenic	-1395	NM_001184979	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
610	chr1	1310871	1311230	+	0	NA	TTS (NM_017871)	TTS (NM_017871)	1516	NR_106785	102465435		NR_106785	ENSG00000283712	MIR6727	hsa-mir-6727	microRNA 6727	ncRNA
55610	chr12	106951801	106952000	+	0	NA	Intergenic	MER90|LTR|ERV1	-3822	NM_001319666	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
213448	chr7	138748771	138749280	+	0	NA	intron (NM_130840, intron 11 of 20)	intron (NM_130840, intron 11 of 20)	25012	NM_130841	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
53016	chr12	57543451	57544330	+	0	NA	intron (NM_001348066, intron 2 of 15)	intron (NM_001348066, intron 2 of 15)	2969	NM_001348065	10540		NM_006400	ENSG00000175203	DCTN2	DCTN50|DYNAMITIN|HEL-S-77|RBP50	dynactin subunit 2	protein-coding
151604	chr22	11706951	11707330	+	0	NA	Intergenic	TAR1|Satellite|telo	-190266	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
129112	chr2	65159871	65160230	+	0	NA	Intergenic	L2a|LINE|L2	-29749	NM_015543	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
166967	chr3	125437821	125438150	+	0	NA	Intergenic	Intergenic	-62631	NM_001348430	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
112895	chr19	7632721	7633280	+	0	NA	promoter-TSS (NM_001271830)	promoter-TSS (NM_001271830)	-8	NM_001271830	126006		NM_174895	ENSG00000174788	PCP2	GPSM4|PCD5	Purkinje cell protein 2	protein-coding
152815	chr22	21860851	21861230	+	0	NA	intron (NM_138957, intron 1 of 7)	MER20B|DNA|hAT-Charlie	6605	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
154084	chr22	30921201	30921400	+	0	NA	intron (NR_146603, intron 1 of 2)	L2|LINE|L2	479	NR_146603	107985544		NR_146603		LOC107985544	-	uncharacterized LOC107985544	ncRNA
143933	chr20	32742911	32744350	+	0	NA	promoter-TSS (NM_001099339)	promoter-TSS (NM_001099339)	-163	NM_053041	149951		NM_053041	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
4900	chr1	23803971	23804700	+	0	NA	intron (NM_001166059, intron 6 of 6)	intron (NM_001166059, intron 6 of 6)	-3581	NM_001008216	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
7591	chr1	35188071	35189050	+	0	NA	intron (NR_136702, intron 6 of 11)	AluJo|SINE|Alu	4585	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
75497	chr15	66389401	66390030	+	0	NA	intron (NM_002755, intron 1 of 10)	AluSg|SINE|Alu	2803	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
167823	chr3	133595001	133595600	+	0	NA	Intergenic	Intergenic	20866	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
147365	chr20	58402221	58402680	+	0	NA	intron (NM_001195677, intron 1 of 2)	intron (NM_001195677, intron 1 of 2)	13221	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
40842	chr11	65026121	65026580	+	0	NA	intron (NR_037650, intron 3 of 10)	intron (NR_037650, intron 3 of 10)	-1089	NM_013306	29907		NM_013306	ENSG00000110025	SNX15	HSAF001435	sorting nexin 15	protein-coding
130296	chr2	84908231	84908350	+	0	NA	Intergenic	Intergenic	2634	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
68614	chr14	89622371	89622730	+	0	NA	Intergenic	Intergenic	-3385	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
29766	chr10	72250501	72251100	+	0	NA	Intergenic	Intergenic	-23124	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
144204	chr20	34312621	34313430	+	0	NA	Intergenic	Intergenic	-1223	NM_001161766	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
164125	chr3	56707471	56708030	+	0	NA	Intergenic	L1MEc|LINE|L1	-24485	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
225429	chr9	35070971	35071180	+	0	NA	intron (NM_007126, intron 1 of 16)	L3b|LINE|CR1	1233	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
170076	chr3	182948071	182948300	+	0	NA	intron (NM_020640, intron 4 of 6)	intron (NM_020640, intron 4 of 6)	32353	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
239163	chrY	11734771	11734950	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	686730	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
211469	chr7	105100151	105100850	+	0	NA	intron (NM_182931, intron 15 of 26)	intron (NM_182931, intron 15 of 26)	86295	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
115798	chr19	16378301	16378700	+	0	NA	intron (NM_021235, intron 21 of 22)	intron (NM_021235, intron 21 of 22)	53674	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
68775	chr14	91118851	91119150	+	0	NA	intron (NM_001286471, intron 1 of 13)	intron (NM_001286471, intron 1 of 13)	4300	NM_001286471	80017		NM_024952	ENSG00000133943	DGLUCY	C14orf159	D-glutamate cyclase	protein-coding
155718	chr22	39123301	39123700	+	0	NA	Intergenic	AluJb|SINE|Alu	26256	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
76672	chr15	75699901	75701350	+	0	NA	intron (NM_001897, intron 1 of 9)	intron (NM_001897, intron 1 of 9)	12223	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
169282	chr3	158105501	158106000	+	0	NA	exon (NM_006884, exon 1 of 5)	exon (NM_006884, exon 1 of 5)	413	NM_006884	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
198244	chr6	99396001	99396430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2020	NM_017421	51805		NM_017421	ENSG00000132423	COQ3	DHHBMT|DHHBMTASE|UG0215E05|bA9819.1	coenzyme Q3, methyltransferase	protein-coding
184360	chr5	97021621	97022080	+	0	NA	intron (NM_175920, intron 13 of 17)	intron (NM_175920, intron 13 of 17)	63417	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
60598	chr13	42038201	42038680	+	0	NA	Intergenic	Intergenic	-1596	NM_001204504	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
222827	chr8	142481901	142482600	+	0	NA	intron (NM_001702, intron 11 of 30)	intron (NM_001702, intron 11 of 30)	32601	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
169913	chr3	177682871	177683030	+	0	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-133915	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
191329	chr6	7084501	7085080	+	0	NA	Intergenic	Intergenic	-22953	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
104401	chr17	81046651	81047380	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	-10719	NM_001385147	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
92467	chr17	8634521	8634780	+	0	NA	Intergenic	Intergenic	-3889	NM_001256095	4628		NM_005964	ENSG00000133026	MYH10	NMMHC-IIB|NMMHCB	myosin heavy chain 10	protein-coding
220549	chr8	100707171	100707930	+	0	NA	intron (NM_002568, intron 9 of 14)	LTR13|LTR|ERVK	-4526	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
151703	chr22	17366971	17367600	+	0	NA	intron (NM_001290046, intron 1 of 18)	intron (NM_001290046, intron 1 of 18)	-2175	NM_001290047	27443		NM_031413	ENSG00000099954	CECR2	-	CECR2 histone acetyl-lysine reader	protein-coding
23047	chr1	226605501	226606100	+	0	NA	3' UTR (NM_001003665, exon 4 of 4)	3' UTR (NM_001003665, exon 4 of 4)	57036	NM_001003665	375057		NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
46258	chr11	124751201	124752180	+	0	NA	intron (NM_014312, intron 1 of 6)	intron (NM_014312, intron 1 of 6)	565	NM_001329920	23584		NM_014312	ENSG00000019102	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
85332	chr16	50121721	50122250	+	0	NA	Intergenic	Intergenic	-30926	NM_001040285	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
180606	chr5	16462571	16462950	+	0	NA	intron (NM_033414, intron 3 of 5)	intron (NM_033414, intron 3 of 5)	3040	NM_033414	90441		NM_033414	ENSG00000173545	ZNF622	ZPR9	zinc finger protein 622	protein-coding
224325	chr9	6750101	6751230	+	0	NA	intron (NM_001146696, intron 1 of 17)	intron (NM_001146696, intron 1 of 17)	-7308	NM_001353999	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
117522	chr19	20244221	20244880	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	77336	NM_052852	90649		NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
209803	chr7	87875771	87877700	+	0	NA	promoter-TSS (NM_018843)	promoter-TSS (NM_018843)	242	NM_006716	10926		NM_006716	ENSG00000006634	DBF4	ASK|CHIF|DBF4A|ZDBF1	DBF4-CDC7 kinase regulatory subunit	protein-coding
130268	chr2	84866171	84866530	+	0	NA	intron (NM_001307978, intron 2 of 4)	MER102b|DNA|hAT-Charlie	14734	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
181503	chr5	43015271	43015700	+	0	NA	TTS (NR_034085)	TTS (NR_034085)	3326	NR_034086	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
115766	chr19	16336751	16337700	+	0	NA	Intergenic	AluSq2|SINE|Alu	12399	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
7468	chr1	33098651	33098750	+	0	NA	intron (NM_001376724, intron 8 of 9)	intron (NM_001376724, intron 8 of 9)	16522	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
145416	chr20	42620451	42620550	+	0	NA	intron (NM_007050, intron 7 of 30)	L1PA2|LINE|L1	-64983	NR_110004	101927159		NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
16643	chr1	155132751	155133050	+	0	NA	intron (NM_182685, intron 2 of 3)	intron (NM_182685, intron 2 of 3)	-2475	NM_001287590	55974		NM_018845	ENSG00000169241	SLC50A1	HsSWEET1|RAG1AP1|SCP|SWEET1|slv	solute carrier family 50 member 1	protein-coding
121726	chr19	47706871	47707630	+	0	NA	Intergenic	L2a|LINE|L2	-6172	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
49276	chr12	19620201	19620450	+	0	NA	Intergenic	Intergenic	179726	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
219215	chr8	66678771	66679300	+	0	NA	TTS (NR_161218)	TTS (NR_161218)	11439	NM_001204173	100533105		NM_001204173	ENSG00000288602	C8orf44-SGK3	-	C8orf44-SGK3 readthrough	protein-coding
199032	chr6	111271901	111272180	+	0	NA	3' UTR (NM_153369, exon 4 of 4)	3' UTR (NM_153369, exon 4 of 4)	12701	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
80703	chr16	3067101	3068500	+	0	NA	intron (NM_001012636, intron 3 of 4)	intron (NM_001012636, intron 3 of 4)	2016	NM_001012636	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
173927	chr4	25374971	25375480	+	0	NA	Intergenic	Intergenic	-2038	NM_001286756	29945		NM_013367	ENSG00000053900	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
70969	chr14	104698801	104699000	+	0	NA	intron (NM_032714, intron 1 of 4)	intron (NM_032714, intron 1 of 4)	9282	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
69429	chr14	94079221	94079480	+	0	NA	exon (NM_020414, exon 2 of 9).2	exon (NM_020414, exon 2 of 9).2	1852	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
191023	chr6	3117951	3119380	+	0	NA	promoter-TSS (NM_004332)	promoter-TSS (NM_004332)	-46	NM_004332	670		NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase like	protein-coding
180956	chr5	35651151	35651500	+	0	NA	intron (NM_144722, intron 6 of 9)	intron (NM_144722, intron 6 of 9)	33462	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
95385	chr17	35893671	35894030	+	0	NA	Intergenic	MER21A|LTR|ERVL	-13490	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
223794	chr8	144754601	144756180	+	0	NA	intron (NM_138367, intron 1 of 4)	CpG	141	NM_138367	90987		NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
156208	chr22	40323571	40326200	+	0	NA	3' UTR (NM_001162501, exon 23 of 23)	3' UTR (NM_001162501, exon 23 of 23)	-21615	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
49083	chr12	14435151	14435250	+	0	NA	intron (NM_181352, intron 3 of 14)	intron (NM_181352, intron 3 of 14)	49919	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
65755	chr14	53955821	53956080	+	0	NA	promoter-TSS (NM_001347917)	promoter-TSS (NM_001347917)	875	NM_001202	652		NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
185518	chr5	131329371	131330130	+	0	NA	intron (NM_001375633, intron 2 of 5)	AluSq2|SINE|Alu	65697	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
54980	chr12	96327921	96328500	+	0	NA	intron (NM_002595, intron 2 of 16)	MER1A|DNA|hAT-Charlie	72229	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
222545	chr8	140596451	140598200	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	38308	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
174041	chr4	26870721	26871180	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	10109	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
76225	chr15	73930001	73930200	+	0	NA	intron (NM_005576, intron 1 of 6)	intron (NM_005576, intron 1 of 6)	-1852	NR_040068	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
61104	chr13	48448901	48449400	+	0	NA	intron (NM_000321, intron 17 of 26)	HAL1|LINE|L1	-4481	NM_005767	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
163642	chr3	52122771	52123730	+	0	NA	intron (NM_001161580, intron 8 of 9)	intron (NM_001161580, intron 8 of 9)	31173	NM_015426	25886		NM_015426	ENSG00000164087	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
72380	chr15	31370671	31370980	+	0	NA	intron (NM_001302461, intron 1 of 1).3	HAL1ME|LINE|L1	43990	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
28145	chr10	43446321	43447100	+	0	NA	intron (NM_001355444, intron 1 of 3)	SVA_B|Retroposon|SVA	9599	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
146088	chr20	47575871	47576100	+	0	NA	intron (NM_181659, intron 1 of 22)	intron (NM_181659, intron 1 of 22)	74098	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
35580	chr11	1694951	1695280	+	0	NA	Intergenic	Intergenic	-2080	NM_001012416	440023		NM_001012416	ENSG00000205864	KRTAP5-6	KRTAP5.6	keratin associated protein 5-6	protein-coding
114397	chr19	12616251	12617130	+	0	NA	intron (NM_153358, intron 1 of 3)	AluSc8|SINE|Alu	5770	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
154317	chr22	31973021	31973630	+	0	NA	intron (NR_149128, intron 1 of 4)	MER33|DNA|hAT-Charlie	2502	NR_149128	105372999		NR_149128		LINC02558	-	long intergenic non-protein coding RNA 2558	ncRNA
135235	chr2	159471401	159471600	+	0	NA	intron (NM_001289975, intron 3 of 35)	AluJb|SINE|Alu	-143794	NR_110588	643072		NR_110587	ENSG00000224152	BAZ2B-AS1	lnc-BAZ2B	BAZ2B antisense RNA 1	ncRNA
77376	chr15	82835271	82835780	+	0	NA	3' UTR (NM_001080435, exon 10 of 10)	3' UTR (NM_001080435, exon 10 of 10)	25897	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
237508	chrX	120001071	120001230	+	0	NA	Intergenic	(CCT)n|Simple_repeat|Simple_repeat	14401	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
168579	chr3	149013171	149013330	+	0	NA	intron (NM_001184721, intron 5 of 5)	intron (NM_001184721, intron 5 of 5)	21710	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
36415	chr11	4097001	4098000	+	0	NA	intron (NM_001033, intron 1 of 18)	intron (NM_001033, intron 1 of 18)	2701	NM_001033	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
120524	chr19	44876901	44877500	+	0	NA	intron (NM_001042724, intron 5 of 8)	intron (NM_001042724, intron 5 of 8)	-14020	NM_001128916	10452		NM_006114	ENSG00000130204	TOMM40	C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40	translocase of outer mitochondrial membrane 40	protein-coding
41914	chr11	67281851	67282230	+	0	NA	intron (NM_001619, intron 11 of 20)	intron (NM_001619, intron 11 of 20)	-7263	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
97757	chr17	44482121	44482380	+	0	NA	intron (NM_001304940, intron 1 of 9)	L1PA8|LINE|L1	21156	NM_001002909	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
22088	chr1	211476121	211476650	+	0	NA	TTS (NM_001164688)	TTS (NM_001164688)	15777	NM_001164688	343035		NM_183059	ENSG00000198570	RD3	C1orf36|LCA12	RD3 regulator of GUCY2D	protein-coding
150819	chr21	43974421	43975800	+	0	NA	intron (NM_020132, intron 7 of 9)	intron (NM_020132, intron 7 of 9)	-37199	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
74069	chr15	52570271	52570950	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1164	NM_001306191	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
223693	chr8	144424301	144424850	+	0	NA	intron (NM_016208, intron 7 of 9)	intron (NM_016208, intron 7 of 9)	3973	NM_016208	51160		NM_016208	ENSG00000160948	VPS28	CIIA	VPS28 subunit of ESCRT-I	protein-coding
110899	chr19	2723071	2723430	+	0	NA	Intergenic	CpG	-1878	NM_145173	148252		NM_145173	ENSG00000176490	DIRAS1	Di-Ras1|GBTS1|RIG	DIRAS family GTPase 1	protein-coding
220988	chr8	115494951	115495370	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	172853	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
196445	chr6	43501701	43502280	+	0	NA	intron (NM_080604, intron 6 of 9)	MIR3|SINE|MIR	8353	NM_001012974	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
125444	chr2	12044651	12045250	+	0	NA	intron (NR_110196, intron 2 of 5)	intron (NR_110196, intron 2 of 5)	37834	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
192058	chr6	16585951	16586330	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	174044	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
14767	chr1	146035071	146036300	+	0	NA	Intergenic	Intergenic	-13950	NM_145277	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
87491	chr16	71800301	71800980	+	0	NA	intron (NM_001128, intron 1 of 22)	AluY|SINE|Alu	8194	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
131976	chr2	100218621	100218880	+	0	NA	intron (NR_103730, intron 1 of 2)	intron (NR_103730, intron 1 of 2)	10496	NR_103730	150577		NM_001102655	ENSG00000232084	LINC01104	-	long intergenic non-protein coding RNA 1104	ncRNA
67387	chr14	69782271	69782950	+	0	NA	intron (NM_003049, intron 2 of 4)	AluY|SINE|Alu	14631	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
87805	chr16	75521321	75521630	+	0	NA	Intergenic	Intergenic	14633	NM_024533	23563		NM_012126	ENSG00000135702	CHST5	I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST	carbohydrate sulfotransferase 5	protein-coding
50080	chr12	44829851	44830150	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	45661	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
220576	chr8	100825001	100825400	+	0	NA	Intergenic	Intergenic	-103112	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
114891	chr19	13904651	13904750	+	0	NA	intron (NM_001345844, intron 2 of 7)	AluSg|SINE|Alu	1417	NM_024323	79173		NM_024323	ENSG00000132016	BRME1	C19orf57|MEIOK21	break repair meiotic recombinase recruitment factor 1	protein-coding
154811	chr22	37018401	37018600	+	0	NA	exon (NM_001270483, exon 2 of 3)	exon (NM_001270483, exon 2 of 3)	947	NM_003312	7263		NM_003312	ENSG00000128311	TST	RDS	thiosulfate sulfurtransferase	protein-coding
8689	chr1	42034221	42034480	+	0	NA	intron (NR_038261, intron 1 of 3)	intron (NR_038261, intron 1 of 3)	1584	NR_038261	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
235661	chrX	48535501	48535900	+	0	NA	Intergenic	MIR|SINE|MIR	-3919	NM_001348262	4943		NM_002536	ENSG00000068354	TBC1D25	MG81|OATL1	TBC1 domain family member 25	protein-coding
170192	chr3	183826651	183827230	+	0	NA	Intergenic	Intergenic	-1363	NM_024871	79929		NM_024871	ENSG00000180834	MAP6D1	MAPO6D1|SL21	MAP6 domain containing 1	protein-coding
115330	chr19	15121771	15122150	+	0	NA	intron (NM_006844, intron 6 of 15)	AluY|SINE|Alu	3826	NM_006844	10994		NM_006844	ENSG00000105135	ILVBL	209L8|AHAS|HACL1L|HACL2|ILV2H	ilvB acetolactate synthase like	protein-coding
133996	chr2	130838101	130838300	+	0	NA	intron (NM_001375900, intron 1 of 12)	MIRc|SINE|MIR	1286	NM_001375901	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
67189	chr14	68843651	68844290	+	0	NA	Intergenic	Intergenic	-47727	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
232708	chr9	136564351	136564850	+	0	NA	Intergenic	Intergenic	16758	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
229648	chr9	124260151	124260450	+	0	NA	intron (NR_149024, intron 1 of 1)	MIRb|SINE|MIR	868	NR_149024	613206		NM_001033016	ENSG00000235204	LOC613206	-	uncharacterized LOC613206	ncRNA
101222	chr17	65594651	65595350	+	0	NA	Intergenic	Intergenic	-33352	NM_004655	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
2217	chr1	8816971	8818530	+	0	NA	promoter-TSS (NM_001042681)	promoter-TSS (NM_001042681)	-110	NM_001042681	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
131588	chr2	96861821	96862330	+	0	NA	intron (NM_017789, intron 12 of 14)	intron (NM_017789, intron 12 of 14)	-4059	NM_016466	51239		NM_016466	ENSG00000213337	ANKRD39	-	ankyrin repeat domain 39	protein-coding
125050	chr2	9614601	9614800	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	16297	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
205504	chr7	18064371	18064530	+	0	NA	Intergenic	Intergenic	-22375	NM_001321869	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
154536	chr22	36154721	36155150	+	0	NA	intron (NM_030644, intron 1 of 4)	MER90|LTR|ERV1	5820	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
221673	chr8	126249051	126249350	+	0	NA	Intergenic	L1MCc|LINE|L1	-76295	NR_125421	101927657		NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
25693	chr10	8892971	8893930	+	0	NA	Intergenic	Intergenic	-4539	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
46941	chr11	134399451	134399550	+	0	NA	intron (NM_054025, intron 1 of 5)	intron (NM_054025, intron 1 of 5)	12418	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
10310	chr1	64865851	64866150	+	0	NA	intron (NM_001321857, intron 7 of 24)	AluJb|SINE|Alu	100549	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
187815	chr5	146662201	146662450	+	0	NA	intron (NR_073526, intron 4 of 8)	intron (NR_073526, intron 4 of 8)	-146135	NM_194251	134391		NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|GPCR-2037|PGR7	G protein-coupled receptor 151	protein-coding
37907	chr11	34086401	34087300	+	0	NA	intron (NM_203364, intron 11 of 17)	intron (NM_203364, intron 11 of 17)	-18779	NM_001144030	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
36632	chr11	7536021	7536480	+	0	NA	intron (NM_001351855, intron 1 of 24)	intron (NM_001351855, intron 1 of 24)	22251	NM_001351856	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
231924	chr9	133109471	133109630	+	0	NA	intron (NM_001271775, intron 4 of 17)	intron (NM_001271775, intron 4 of 17)	11690	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
109233	chr19	500371	500830	+	0	NA	intron (NM_130762, intron 3 of 3)	AluSg|SINE|Alu	4114	NM_130760	8174		NM_130760	ENSG00000099866	MADCAM1	MACAM1	mucosal vascular addressin cell adhesion molecule 1	protein-coding
215087	chr7	155004551	155004850	+	0	NA	non-coding (NR_028090, exon 1 of 1)	non-coding (NR_028090, exon 1 of 1)	1267	NR_028090	202781		NR_028090	ENSG00000273344	PAXIP1-DT	PAXIP1-AS1	PAXIP1 divergent transcript	ncRNA
170049	chr3	182795121	182795980	+	0	NA	intron (NM_014616, intron 1 of 29)	intron (NM_014616, intron 1 of 29)	2046	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
108923	chr18	79447851	79448350	+	0	NA	intron (NM_172389, intron 3 of 9)	intron (NM_172389, intron 3 of 9)	47801	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
33929	chr10	124608001	124608330	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-95863	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
24407	chr1	243252251	243252550	+	0	NA	intron (NM_001042405, intron 1 of 18).2	intron (NM_001042405, intron 1 of 18).2	2881	NM_014812	9859		NM_014812	ENSG00000143702	CEP170	FAM68A|KAB|KIAA0470	centrosomal protein 170	protein-coding
97277	chr17	43029071	43029230	+	0	NA	3' UTR (NM_005440, exon 5 of 5)	3' UTR (NM_005440, exon 5 of 5)	3919	NM_005440	8153		NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
138518	chr2	207308621	207308930	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-39351	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA
123318	chr19	53578951	53579250	+	0	NA	3' UTR (NM_001253801, exon 5 of 5)	3' UTR (NM_001253801, exon 5 of 5)	23793	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
144810	chr20	36743671	36743830	+	0	NA	intron (NR_038370, intron 1 of 13)	AluY|SINE|Alu	2340	NM_022477	57446		NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
49756	chr12	31746721	31747080	+	0	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-17726	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
239310	chrY	17077551	17077650	+	0	NA	Intergenic	AluY|SINE|Alu	-423358	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
44343	chr11	102422801	102423650	+	0	NA	intron (NM_052932, intron 2 of 4)	MLT1F1|LTR|ERVL-MaLR	29540	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
221774	chr8	127920921	127921530	+	0	NA	intron (NR_003367, intron 2 of 8)	L2b|LINE|L2	27498	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
115284	chr19	14563321	14563730	+	0	NA	intron (NM_138501, intron 3 of 12)	intron (NM_138501, intron 3 of 12)	8541	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
189925	chr5	177382651	177383150	+	0	NA	Intergenic	Intergenic	-1534	NM_001167579	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
112722	chr19	7200521	7201180	+	0	NA	intron (NM_001079817, intron 2 of 20)	AluJo|SINE|Alu	93564	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
9157	chr1	45545121	45545580	+	0	NA	Intergenic	Intergenic	-5433	NM_001202413	10327		NM_006066	ENSG00000117448	AKR1A1	ALDR1|ALR|ARM|DD3|HEL-S-6	aldo-keto reductase family 1 member A1	protein-coding
158065	chr22	49955721	49956850	+	0	NA	Intergenic	Intergenic	-4487	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
188235	chr5	151020401	151021680	+	0	NA	intron (NM_001329790, intron 2 of 5)	intron (NM_001329790, intron 2 of 5)	449	NM_002084	2878		NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
102405	chr17	75595121	75595730	+	0	NA	intron (NM_001309242, intron 11 of 62)	MIRb|SINE|MIR	7367	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
46778	chr11	129994271	129994630	+	0	NA	intron (NM_199437, intron 1 of 20)	AluSx1|SINE|Alu	-8174	NR_024233	440072		NM_001007543		PRDM10-DT	C11orf37|LINC00167|NCRNA00167	PRDM10 divergent transcript	ncRNA
140233	chr2	231780551	231782180	+	0	NA	promoter-TSS (NM_001282951)	promoter-TSS (NM_001282951)	-38	NM_001291018	5147		NM_002601	ENSG00000156973	PDE6D	JBTS22|PDED	phosphodiesterase 6D	protein-coding
227745	chr9	93087151	93087450	+	0	NA	Intergenic	Intergenic	-8917	NM_032310	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
65275	chr14	50000421	50001090	+	0	NA	non-coding (NR_126500, exon 3 of 3)	non-coding (NR_126500, exon 3 of 3)	5764	NR_126496	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
184113	chr5	94109851	94110580	+	0	NA	intron (NR_028080, intron 1 of 8)	L2a|LINE|L2	1448	NM_032042	83989		NM_032042	ENSG00000113391	ARB2A	C5orf21|FAM172A|Toupee	ARB2 cotranscriptional regulator A	protein-coding
17228	chr1	156285901	156286100	+	0	NA	intron (NM_032323, intron 2 of 3)	intron (NM_032323, intron 2 of 3)	1675	NM_032323	84283		NM_032323	ENSG00000163472	TMEM79	MATT	transmembrane protein 79	protein-coding
226155	chr9	63814221	63814480	+	0	NA	non-coding (NR_146625, exon 1 of 2)	non-coding (NR_146625, exon 1 of 2)	1409	NR_146626	203274		NR_146625		LINC00537	-	long intergenic non-protein coding RNA 537	ncRNA
62513	chr13	99495321	99497200	+	0	NA	intron (NR_110731, intron 3 of 4)	MER51A|LTR|ERV1	3046	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
133640	chr2	127025151	127026080	+	0	NA	Intergenic	CpG	56450	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
162121	chr3	46933521	46933780	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	42851	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
235805	chrX	49189401	49189600	+	0	NA	intron (NM_003179, intron 6 of 6)	intron (NM_003179, intron 6 of 6)	-3127	NM_006150	4007		NM_006150	ENSG00000012211	PRICKLE3	LMO6|LOAM|LOAS|Pk3	prickle planar cell polarity protein 3	protein-coding
233146	chr9	137165001	137165430	+	0	NA	exon (NM_001185090, exon 20 of 21)	exon (NM_001185090, exon 20 of 21)	4055	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
19355	chr1	173855071	173855680	+	0	NA	intron (NM_018122, intron 15 of 16)	AluSz|SINE|Alu	-7873	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
68255	chr14	77025071	77025300	+	0	NA	3' UTR (NM_024496, exon 1 of 1)	3' UTR (NM_024496, exon 1 of 1)	3523	NM_024496	64207		NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1|NEDAMSS	interferon regulatory factor 2 binding protein like	protein-coding
19406	chr1	174166771	174167350	+	0	NA	intron (NM_001366447, intron 1 of 20)	intron (NM_001366447, intron 1 of 20)	7540	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
201947	chr6	151701821	151702400	+	0	NA	intron (NM_001385570, intron 2 of 8)	intron (NM_001385570, intron 2 of 8)	11583	NM_001385570	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
139001	chr2	218333101	218333300	+	0	NA	intron (NR_125777, intron 2 of 3)	L2a|LINE|L2	-8711	NR_106868	102466197		NR_106868	ENSG00000278524	MIR6810	hsa-mir-6810	microRNA 6810	ncRNA
131949	chr2	99338971	99339300	+	0	NA	intron (NM_015904, intron 1 of 23)	AluSp|SINE|Alu	1746	NM_015904	9669		NM_015904	ENSG00000158417	EIF5B	IF2	eukaryotic translation initiation factor 5B	protein-coding
55041	chr12	96394451	96395900	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	5264	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
83597	chr16	28180501	28181180	+	0	NA	intron (NM_001270940, intron 3 of 24)	intron (NM_001270940, intron 3 of 24)	31125	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
51049	chr12	49792571	49793000	+	0	NA	exon (NM_001368048, exon 12 of 14)	exon (NM_001368048, exon 12 of 14)	35628	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
178173	chr4	142375771	142375930	+	0	NA	intron (NM_001385334, intron 6 of 24)	MLT1L|LTR|ERVL-MaLR	27283	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
26268	chr10	14757501	14757730	+	0	NA	intron (NM_001282695, intron 1 of 5)	intron (NM_001282695, intron 1 of 5)	17282	NM_001282695	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
224541	chr9	19259801	19260200	+	0	NA	intron (NM_001330640, intron 1 of 32)	L1PA5|LINE|L1	29307	NR_073201	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
230407	chr9	128114721	128114980	+	0	NA	intron (NR_033374, intron 3 of 4)	MIRb|SINE|MIR	3884	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
139334	chr2	219561401	219561780	+	0	NA	TTS (NM_001173408)	TTS (NM_001173408)	9949	NM_001173408	23363		NM_015311	ENSG00000124006	OBSL1	-	obscurin like cytoskeletal adaptor 1	protein-coding
6274	chr1	27593401	27593800	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	9894	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
100409	chr17	60518051	60518730	+	0	NA	intron (NM_006380, intron 1 of 12)	(GT)n|Simple_repeat|Simple_repeat	7850	NM_001282476	10513		NM_006380	ENSG00000062725	APPBP2	APP-BP2|HS.84084|PAT1	amyloid beta precursor protein binding protein 2	protein-coding
222321	chr8	133505051	133506230	+	0	NA	intron (NM_173344, intron 2 of 9)	AluSg|SINE|Alu	66247	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
208322	chr7	66146701	66147300	+	0	NA	intron (NM_001142414, intron 4 of 4)	intron (NM_001142414, intron 4 of 4)	32153	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
205165	chr7	7260151	7260250	+	0	NA	intron (NR_108073, intron 2 of 3)	intron (NR_108073, intron 2 of 3)	5046	NR_108073	101927354		NR_108073	ENSG00000230825	LINC03016	-	long intergenic non-protein coding RNA 3016	ncRNA
223288	chr8	143741371	143741730	+	0	NA	intron (NM_001381874, intron 3 of 13)	intron (NM_001381874, intron 3 of 13)	7411	NM_001381874	642574		NM_001381874	ENSG00000203499	IQANK1	CACClnc|FAM83H-AS1|FAM83HAS1|onco-lncRNA-3	IQ motif and ankyrin repeat containing 1	protein-coding
168546	chr3	146513171	146513530	+	0	NA	Intergenic	Intergenic	-17359	NM_001199979	57047		NM_020359	ENSG00000163746	PLSCR2	-	phospholipid scramblase 2	protein-coding
80226	chr16	2186221	2186680	+	0	NA	intron (NM_020764, intron 10 of 19)	intron (NM_020764, intron 10 of 19)	10155	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
30541	chr10	79487451	79487830	+	0	NA	Intergenic	Intergenic	23342	NR_136624	729815		NR_136624	ENSG00000293221	LOC729815	-	uncharacterized LOC729815	ncRNA
166355	chr3	112987151	112987450	+	0	NA	Intergenic	L2a|LINE|L2	-3653	NM_138485	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
37336	chr11	14856071	14856230	+	0	NA	intron (NM_001363569, intron 12 of 15)	THE1D|LTR|ERVL-MaLR	35521	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
57361	chr12	121783351	121783450	+	0	NA	intron (NM_019034, intron 2 of 4)	AluSx1|SINE|Alu	10288	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
229960	chr9	126703751	126703850	+	0	NA	Intergenic	Intergenic	89872	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
216561	chr8	21907421	21907880	+	0	NA	Intergenic	AluSg7|SINE|Alu	6040	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
133968	chr2	130693751	130693850	+	0	NA	Intergenic	CpG	13750	NR_023391	100132708		NM_032248	ENSG00000290699	CYP4F30P	C2orf14	cytochrome P450 family 4 subfamily F member 30, pseudogene	pseudo
64564	chr14	24645721	24645980	+	0	NA	Intergenic	L1PA12|LINE|L1	-11660	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
106060	chr18	9100851	9100950	+	0	NA	Intergenic	L2a|LINE|L2	-1799	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
13386	chr1	113937221	113937930	+	0	NA	intron (NM_001369806, intron 1 of 15)	L2b|LINE|L2	7731	NM_001369807	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
147957	chr20	62967021	62967480	+	0	NA	intron (NM_022082, intron 12 of 12)	intron (NM_022082, intron 12 of 12)	14541	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
186434	chr5	136030121	136030580	+	0	NA	intron (NM_000358, intron 1 of 16)	intron (NM_000358, intron 1 of 16)	1362	NM_000358	7045		NM_000358	ENSG00000120708	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor beta induced	protein-coding
84848	chr16	31131551	31131650	+	0	NA	TTS (NM_182958)	TTS (NM_182958)	4127	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
69501	chr14	95527171	95527880	+	0	NA	Intergenic	Intergenic	6104	NR_003002	677768		NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA
116252	chr19	17605651	17606800	+	0	NA	exon (NM_001080421, exon 42 of 42)	exon (NM_001080421, exon 42 of 42)	50576	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
73153	chr15	41425851	41426150	+	0	NA	intron (NM_015138, intron 1 of 17)	intron (NM_015138, intron 1 of 17)	8896	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
31763	chr10	98028221	98028700	+	0	NA	intron (NM_001206528, intron 1 of 14)	intron (NM_001206528, intron 1 of 14)	2161	NM_018058	55118		NM_018058	ENSG00000095713	CRTAC1	ASPIC|ASPIC1|CEP-68|CEP68|LOTUS	cartilage acidic protein 1	protein-coding
231042	chr9	129619751	129620980	+	0	NA	exon (NM_199350, exon 1 of 7)	exon (NM_199350, exon 1 of 7)	152	NM_001286797	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
56338	chr12	112937701	112939000	+	0	NA	promoter-TSS (NM_006187)	promoter-TSS (NM_006187)	-124	NM_006187	4940		NM_006187	ENSG00000111331	OAS3	p100|p100OAS	2'-5'-oligoadenylate synthetase 3	protein-coding
215314	chr7	157343171	157343550	+	0	NA	intron (NM_001363676, intron 1 of 6)	AluSx1|SINE|Alu	6356	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
139280	chr2	219496601	219497000	+	0	NA	intron (NM_001286811, intron 1 of 3)	CpG	445	NM_001286811	100996693		NM_001286811	ENSG00000286095	SPEGNB	-	SPEG neighbor	protein-coding
38995	chr11	47641971	47643880	+	0	NA	promoter-TSS (NM_001317231)	promoter-TSS (NM_001317231)	-271	NM_001317232	23788		NM_014342	ENSG00000109919	MTCH2	HSPC032|MIMP|SLC25A50	mitochondrial carrier 2	protein-coding
149409	chr21	31181251	31181710	+	0	NA	intron (NM_001353694, intron 15 of 27)	L2c|LINE|L2	-20540	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
84141	chr16	29733771	29734130	+	0	NA	Intergenic	MER21B|LTR|ERVL	12040	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
176458	chr4	89303051	89303580	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	4485	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
81176	chr16	4463771	4463930	+	0	NA	exon (NM_001351995, exon 5 of 6)	exon (NM_001351995, exon 5 of 6)	10775	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
183256	chr5	76424921	76425550	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	21950	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
147607	chr20	62117071	62118180	+	0	NA	Intergenic	Intergenic	-4850	NM_144703	149986		NM_014054	ENSG00000149657	LSM14B	C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3	LSM family member 14B	protein-coding
170227	chr3	184178251	184178750	+	0	NA	intron (NM_001311198, intron 3 of 12)	intron (NM_001311198, intron 3 of 12)	3645	NM_004068	1173		NM_004068	ENSG00000161203	AP2M1	AP50|CLAPM1|MRD60|mu2	adaptor related protein complex 2 subunit mu 1	protein-coding
172045	chr4	1008701	1010200	+	0	NA	Intergenic	CpG	-2176	NM_001004356	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
82572	chr16	18781221	18781930	+	0	NA	3' UTR (NM_001030009, exon 5 of 5)	3' UTR (NM_001030009, exon 5 of 5)	8759	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
27231	chr10	29392401	29392700	+	0	NA	Intergenic	L1MC4|LINE|L1	-16984	NR_110925	102724316		NR_003930	ENSG00000291093	SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
65622	chr14	52281821	52282280	+	0	NA	Intergenic	PRIMA4-int|LTR|ERV1	14352	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
170343	chr3	184523951	184524050	+	0	NA	Intergenic	L1ME4a|LINE|L1	32918	NR_046593	100874079		NR_046593	ENSG00000230215	LINC01840	EIF2B5-AS1	long intergenic non-protein coding RNA 1840	ncRNA
231199	chr9	129938551	129938950	+	0	NA	intron (NM_001363755, intron 6 of 15)	intron (NM_001363755, intron 6 of 15)	69145	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
101197	chr17	65455971	65456230	+	0	NA	Intergenic	AmnSINE2|SINE|tRNA-Deu	-1441	NR_131984	105827617		NR_131984	ENSG00000263520	LINC02563	CRAT40	long intergenic non-protein coding RNA 2563	ncRNA
167241	chr3	128491101	128491330	+	0	NA	intron (NR_125398, intron 2 of 2)	CpG-20230	1986	NM_032638	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
43785	chr11	86275851	86275950	+	0	NA	intron (NM_001308007, intron 10 of 12)	intron (NM_001308007, intron 10 of 12)	-2433	NR_106813	102465452		NR_106813	ENSG00000283744	MIR6755	hsa-mir-6755	microRNA 6755	ncRNA
184736	chr5	109693921	109694500	+	0	NA	intron (NM_002372, intron 1 of 21)	intron (NM_002372, intron 1 of 21)	4844	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
38960	chr11	47539821	47540600	+	0	NA	intron (NM_001376458, intron 1 of 13)	intron (NM_001376458, intron 1 of 13)	12922	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
219493	chr8	73894101	73894400	+	0	NA	Intergenic	AluJr|SINE|Alu	15268	NR_147034	101926947		NR_147034		LINC01617	C8orf23|NCRNA00249|XLOC_006844	long intergenic non-protein coding RNA 1617	ncRNA
200138	chr6	130263971	130264130	+	0	NA	intron (NM_001258275, intron 2 of 13)	Harlequin-int|LTR|ERV1	-41099	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
228793	chr9	111760021	111760300	+	0	NA	promoter-TSS (NM_001080551)	promoter-TSS (NM_001080551)	-624	NM_001080551	158401		NM_173521	ENSG00000165181	SHOC1	C9orf84|MZIP2|SPGF75|ZIP2|ZIP2H	shortage in chiasmata 1	protein-coding
193570	chr6	30666371	30666530	+	0	NA	intron (NM_001164239, intron 4 of 19).6	intron (NM_001164239, intron 4 of 19).6	6556	NM_003587	8449		NM_003587	ENSG00000204560	DHX16	DBP2|DDX16|NMOAS|PRO2014|PRP8|PRPF2|Prp2	DEAH-box helicase 16	protein-coding
6114	chr1	27340201	27340630	+	0	NA	Intergenic	Intergenic	-1607	NM_032872	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
118141	chr19	34996651	34998300	+	0	NA	intron (NM_001320036, intron 2 of 19)	intron (NM_001320036, intron 2 of 19)	2748	NM_001320036	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
57003	chr12	120576651	120577250	+	0	NA	3' UTR (NM_014868, exon 17 of 17)	3' UTR (NM_014868, exon 17 of 17)	4448	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
230044	chr9	127392571	127392950	+	0	NA	intron (NR_104591, intron 26 of 26)	intron (NR_104591, intron 26 of 26)	-4378	NM_001271711	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
185740	chr5	132100271	132100430	+	0	NA	Intergenic	L2a|LINE|L2	26561	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
171929	chr4	869071	869430	+	0	NA	intron (NM_001318134, intron 16 of 24)	(CACA)n|Simple_repeat|Simple_repeat	-43121	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
155273	chr22	38077671	38078230	+	0	NA	TTS (NM_013356)	TTS (NM_013356)	6234	NM_013356	23539		NM_013356	ENSG00000100156	SLC16A8	MCT3|REMP	solute carrier family 16 member 8	protein-coding
168742	chr3	151135501	151136180	+	0	NA	intron (NM_053002, intron 4 of 42)	intron (NM_053002, intron 4 of 42)	49042	NM_053002	116931		NM_053002	ENSG00000144893	MED12L	NIZIDS|NOPAR|TNRC11L|TRALP|TRALPUSH	mediator complex subunit 12L	protein-coding
199784	chr6	125994971	125995330	+	0	NA	intron (NM_001350597, intron 2 of 13)	L1PA11|LINE|L1	8610	NM_001031712	60487		NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
20208	chr1	193125151	193125330	+	0	NA	intron (NM_024529, intron 2 of 16)	intron (NM_024529, intron 2 of 16)	3209	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
74575	chr15	60546601	60547300	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	45576	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
81415	chr16	8673221	8673500	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1257	NM_020686	18		NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
207125	chr7	42910371	42910600	+	0	NA	exon (NM_001099858, exon 2 of 2)	exon (NM_001099858, exon 2 of 2)	1358	NM_001363436	79020		NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
52200	chr12	54364021	54364930	+	0	NA	promoter-TSS (NM_020370)	promoter-TSS (NM_020370)	11	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
169564	chr3	170353821	170354080	+	0	NA	Intergenic	Intergenic	-3765	NM_001145098	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
47567	chr12	4324221	4324480	+	0	NA	intron (NM_020375, intron 1 of 5)	intron (NM_020375, intron 1 of 5)	3137	NM_020375	57103		NM_020375	ENSG00000078237	TIGAR	C12orf5|FR2BP	TP53 induced glycolysis regulatory phosphatase	protein-coding
77866	chr15	88901651	88901950	+	0	NA	intron (NM_001114614, intron 5 of 6)	intron (NM_001114614, intron 5 of 6)	-6256	NM_178232	145864		NM_178232	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
9992	chr1	55128701	55129230	+	0	NA	intron (NM_015306, intron 32 of 67)	AluJb|SINE|Alu	86399	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
23451	chr1	228464131	228465100	+	0	NA	Intergenic	CpG	2541	NR_039812	100616308		NR_039812	ENSG00000266174	MIR4666A	MIR4666|hsa-mir-4666a	microRNA 4666a	ncRNA
166589	chr3	118955771	118956530	+	0	NA	intron (NM_001353326, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	13074	NR_046230	100506765		NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
32163	chr10	101467251	101467660	+	0	NA	intron (NM_033637, intron 3 of 14)	intron (NM_033637, intron 3 of 14)	113290	NM_003939	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
96988	chr17	42275551	42277980	+	0	NA	promoter-TSS (NM_012448)	promoter-TSS (NM_012448)	-374	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
203976	chr7	1663051	1663850	+	0	NA	Intergenic	Intergenic	-24669	NM_001128636	392617		NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
148078	chr20	63292271	63292900	+	0	NA	promoter-TSS (NM_020882)	promoter-TSS (NM_020882)	-601	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
136916	chr2	189685651	189685980	+	0	NA	intron (NM_001378068, intron 2 of 22)	HAL1|LINE|L1	9830	NM_144708	150709		NM_144708	ENSG00000151687	ANKAR	-	ankyrin and armadillo repeat containing	protein-coding
4126	chr1	19326401	19326600	+	0	NA	intron (NR_109848, intron 6 of 9)	intron (NR_109848, intron 6 of 9)	14174	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
204823	chr7	5692321	5692780	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-12089	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
229305	chr9	120866201	120866600	+	0	NA	intron (NM_001286840, intron 7 of 14)	intron (NM_001286840, intron 7 of 14)	2511	NR_104601	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
213838	chr7	141710271	141710450	+	0	NA	intron (NM_001105558, intron 1 of 11).2	intron (NM_001105558, intron 1 of 11).2	2007	NM_001105558	494551		NM_001105558	ENSG00000214102	WEE2	OOMD5|OZEMA5|WEE1B	WEE2 oocyte meiosis inhibiting kinase	protein-coding
228694	chr9	108872651	108872750	+	0	NA	intron (NM_001318360, intron 36 of 36)	AluYi6|SINE|Alu	10434	NM_006687	10881		NM_006687	ENSG00000187003	ACTL7A	SPGF86	actin like 7A	protein-coding
21393	chr1	205273201	205274250	+	0	NA	TTS (NM_001297613)	TTS (NM_001297613)	16528	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
196769	chr6	45478051	45478750	+	0	NA	intron (NM_001278478, intron 3 of 5)	MIRc|SINE|MIR	56125	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
12507	chr1	108107621	108107930	+	0	NA	Intergenic	Intergenic	85060	NM_213651	29957		NM_013386	ENSG00000085491	SLC25A24	APC1|SCAMC-1|SCAMC1	solute carrier family 25 member 24	protein-coding
166660	chr3	120053001	120053730	+	0	NA	intron (NM_001146156, intron 1 of 10)	intron (NM_001146156, intron 1 of 10)	31283	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
197414	chr6	73525151	73525480	+	0	NA	Intergenic	L1ME4b|LINE|L1	-4283	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
54482	chr12	92039951	92040050	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	101713	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
13718	chr1	116788701	116789100	+	0	NA	Intergenic	L1PB1|LINE|L1	34470	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
105356	chr17	82642171	82642330	+	0	NA	intron (NM_019613, intron 2 of 9)	MER1B|DNA|hAT-Charlie	6194	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
130323	chr2	84975671	84976680	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	5014	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
182378	chr5	60960621	60960980	+	0	NA	intron (NM_174889, intron 1 of 3)	intron (NM_174889, intron 1 of 3)	15595	NM_174889	91942		NM_174889	ENSG00000164182	NDUFAF2	B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin	NADH:ubiquinone oxidoreductase complex assembly factor 2	protein-coding
225810	chr9	37649571	37649950	+	0	NA	intron (NM_001371224, intron 2 of 16)	intron (NM_001371224, intron 2 of 16)	-1194	NM_014907	22844		NM_014907	ENSG00000070601	FRMPD1	FRMD2	FERM and PDZ domain containing 1	protein-coding
96239	chr17	39807051	39807600	+	0	NA	intron (NM_001257408, intron 2 of 6)	L1MB7|LINE|L1	-29100	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
87780	chr16	75429721	75429980	+	0	NA	intron (NM_006324, intron 1 of 6)	MER4B|LTR|ERV1	3653	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
110371	chr19	1911001	1911880	+	0	NA	intron (NM_001329539, intron 1 of 5)	AluJo|SINE|Alu	6041	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
130247	chr2	84845051	84845150	+	0	NA	intron (NM_001307978, intron 2 of 4)	AluSx1|SINE|Alu	35984	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
132025	chr2	100818421	100819080	+	0	NA	Intergenic	CpG	-1389	NM_002518	4862		NM_002518	ENSG00000170485	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
200249	chr6	132357171	132357350	+	0	NA	intron (NM_015529, intron 4 of 11)	intron (NM_015529, intron 4 of 11)	44215	NM_015529	26002		NM_015529	ENSG00000079931	MOXD1	MOX|PRO5780|dJ248E1.1	monooxygenase DBH like 1	protein-coding
76136	chr15	72547021	72547430	+	0	NA	intron (NM_005744, intron 3 of 13)	AluY|SINE|Alu	-39992	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
82776	chr16	21443571	21443950	+	0	NA	Intergenic	L2a|LINE|L2	-9305	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
199683	chr6	122530501	122530800	+	0	NA	intron (NM_001270393, intron 3 of 7)	intron (NM_001270393, intron 3 of 7)	58733	NM_181794	5570		NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
218991	chr8	63063771	63063950	+	0	NA	intron (NM_000370, intron 4 of 4)	intron (NM_000370, intron 4 of 4)	22193	NM_000370	7274		NM_000370	ENSG00000137561	TTPA	ATTP|AVED|TTP1|alphaTTP	alpha tocopherol transfer protein	protein-coding
184532	chr5	102290021	102290280	+	0	NA	intron (NM_180991, intron 2 of 12)	MSTB1|LTR|ERVL-MaLR	6134	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
126398	chr2	27627001	27627400	+	0	NA	exon (NM_001142683, exon 2 of 2)	exon (NM_001142683, exon 2 of 2)	-1448	NM_001145048	11321		NM_007266	ENSG00000198522	GPN1	ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1	GPN-loop GTPase 1	protein-coding
75264	chr15	64992371	64992530	+	0	NA	Intergenic	AluSc|SINE|Alu	-2536	NM_001127890	51324		NM_016630	ENSG00000090487	SPG21	ABHD21|ACP33|BM-019|GL010|MAST	SPG21 abhydrolase domain containing, maspardin	protein-coding
220772	chr8	102412301	102413680	+	0	NA	promoter-TSS (NM_015902)	promoter-TSS (NM_015902)	-290	NM_015902	51366		NM_015902	ENSG00000104517	UBR5	DD5|EDD|EDD1|HYD	ubiquitin protein ligase E3 component n-recognin 5	protein-coding
2177	chr1	8511501	8512380	+	0	NA	intron (NM_012102, intron 8 of 23)	intron (NM_012102, intron 8 of 23)	-17027	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
182651	chr5	67187401	67187800	+	0	NA	intron (NM_005582, intron 1 of 2)	intron (NM_005582, intron 1 of 2)	9199	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
217673	chr8	30104821	30105180	+	0	NA	intron (NM_001128208, intron 3 of 3)	AluY|SINE|Alu	9592	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
5708	chr1	26379921	26380180	+	0	NA	Intergenic	AluSx|SINE|Alu	-7256	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
153252	chr22	24064021	24064430	+	0	NA	intron (NM_012295, intron 15 of 36)	AluSq2|SINE|Alu	52855	NM_001199281	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
39026	chr11	47757101	47758600	+	0	NA	intron (NM_015308, intron 2 of 16)	AluJr|SINE|Alu	9491	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
169105	chr3	155469321	155469730	+	0	NA	Intergenic	L1PA2|LINE|L1	-16278	NR_146955	100874036		NR_146955	ENSG00000242925	PLCH1-AS2	-	PLCH1 antisense RNA 2	ncRNA
149224	chr21	25509921	25510180	+	0	NA	Intergenic	Intergenic	-52095	NR_001458	114614		NR_001458	ENSG00000234883	MIR155HG	BIC|BIC-155|MIRHG2|NCRNA00172|miPEP155	MIR155 host gene	ncRNA
237621	chrX	124011851	124011950	+	0	NA	intron (NM_001282418, intron 2 of 33)	MSTC|LTR|ERVL-MaLR	50194	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
89431	chr16	88940071	88940580	+	0	NA	non-coding (NR_168285, exon 1 of 2)	non-coding (NR_168285, exon 1 of 2)	1025	NM_175931	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
154732	chr22	36466501	36467180	+	0	NA	TTS (NM_012473)	TTS (NM_012473)	14800	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
148934	chr21	9821271	9821630	+	0	NA	promoter-TSS (NR_038377)	promoter-TSS (NR_038377)	-389	NR_038377	441058		NM_001004347		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
110658	chr19	2247871	2248400	+	0	NA	exon (NM_007165, exon 9 of 9)	exon (NM_007165, exon 9 of 9)	-1188	NM_000479	268		NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
88698	chr16	85821151	85821730	+	0	NA	Intergenic	Intergenic	21745	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
53193	chr12	62190751	62191780	+	0	NA	5' UTR (NM_178539, exon 1 of 5)	5' UTR (NM_178539, exon 1 of 5)	1574	NM_178539	338811		NM_178539	ENSG00000198673	TAFA2	FAM19A2|TAFA-2	TAFA chemokine like family member 2	protein-coding
182901	chr5	70288951	70289250	+	0	NA	intron (NR_029426, intron 1 of 9).3	L1PA16|LINE|L1	1077	NR_029426	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
109421	chr19	699921	701050	+	0	NA	Intergenic	AluY|SINE|Alu	-5033	NM_214710	400668		NM_214710	ENSG00000185198	PRSS57	NSP4|PRSSL1|UNQ782	serine protease 57	protein-coding
5647	chr1	26279321	26280730	+	0	NA	promoter-TSS (NM_031286)	promoter-TSS (NM_031286)	-61	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
68038	chr14	75192921	75193600	+	0	NA	Intergenic	MSTD-int|LTR|ERVL-MaLR	-16648	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
126366	chr2	27439851	27440030	+	0	NA	intron (NM_001321361, intron 12 of 18)	intron (NM_001321361, intron 12 of 18)	-2426	NM_001168364	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
125834	chr2	24361571	24361730	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1114	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
80514	chr16	2750921	2751380	+	0	NA	intron (NR_027275, intron 1 of 5)	intron (NR_027275, intron 1 of 5)	1450	NR_027275	100128788		NR_027274	ENSG00000205913	SRRM2-AS1	-	SRRM2 antisense RNA 1	ncRNA
61322	chr13	50421821	50422680	+	0	NA	intron (NR_109974, intron 3 of 6)	MIRb|SINE|MIR	105199	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
196835	chr6	47203171	47203930	+	0	NA	Intergenic	Intergenic	106355	NM_014452	27242		NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
202245	chr6	156883571	156883950	+	0	NA	intron (NM_001371656, intron 4 of 20)	intron (NM_001371656, intron 4 of 20)	-104029	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
200027	chr6	129677451	129677750	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	32577	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
130029	chr2	74380071	74381050	+	0	NA	promoter-TSS (NM_001135040)	promoter-TSS (NM_001135040)	-249	NM_004082	1639		NM_004082	ENSG00000204843	DCTN1	DAP-150|DP-150|HMND14|P135	dynactin subunit 1	protein-coding
110908	chr19	2762401	2763130	+	0	NA	intron (NM_003021, intron 6 of 11)	intron (NM_003021, intron 6 of 11)	20508	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
231177	chr9	129901401	129901800	+	0	NA	intron (NM_001363755, intron 13 of 15)	intron (NM_001363755, intron 13 of 15)	31995	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
11080	chr1	85256121	85256380	+	0	NA	intron (NR_024113, intron 3 of 3)	MIRc|SINE|MIR	3412	NR_024113	148423		NM_198077	ENSG00000162642	C1orf52	gm117	chromosome 1 open reading frame 52	protein-coding
101179	chr17	65176101	65176300	+	0	NA	intron (NM_001165933, intron 8 of 16)	intron (NM_001165933, intron 8 of 16)	38830	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
92294	chr17	8095071	8095230	+	0	NA	TTS (NM_001369446)	TTS (NM_001369446)	7094	NR_036201	100422983		NR_036201	ENSG00000264005	MIR4314	-	microRNA 4314	ncRNA
145541	chr20	44188721	44189480	+	0	NA	Intergenic	Intergenic	-1912	NM_175913	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
40211	chr11	63505971	63506330	+	0	NA	promoter-TSS (NM_033101)	promoter-TSS (NM_033101)	66	NM_001142536	85329		NM_033101	ENSG00000133317	LGALS12	GAL12|GRIP1	galectin 12	protein-coding
193327	chr6	30171621	30172880	+	0	NA	exon (NM_033229, exon 7 of 7).6	exon (NM_033229, exon 7 of 7).6	8704	NM_033229	89870		NM_033229	ENSG00000204610	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
171194	chr3	195695971	195696230	+	0	NA	intron (NR_122105, intron 2 of 4)	L1PA7|LINE|L1	-3301	NR_030296	693155		NR_030296	ENSG00000207650	MIR570	MIRN570|hsa-mir-570	microRNA 570	ncRNA
16684	chr1	155197101	155197450	+	0	NA	intron (NM_007112, intron 20 of 22)	intron (NM_007112, intron 20 of 22)	2098	NR_030281	693235		NR_030281	ENSG00000284586	MIR92B	MIRN92B|hsa-mir-92b|mir-92b	microRNA 92b	ncRNA
112526	chr19	6513851	6514480	+	0	NA	Intergenic	Intergenic	-11317	NM_001289123	10382		NM_006087	ENSG00000104833	TUBB4A	DYT4|TUBB4|beta-5	tubulin beta 4A class IVa	protein-coding
150420	chr21	42406121	42407450	+	0	NA	intron (NM_001243467, intron 2 of 11)	intron (NM_001243467, intron 2 of 11)	2883	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
217774	chr8	33321151	33321250	+	0	NA	Intergenic	MLT1H1-int|LTR|ERVL-MaLR	151946	NM_032664	84750		NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
166948	chr3	125212501	125213100	+	0	NA	promoter-TSS (NM_024628)	promoter-TSS (NM_024628)	-52	NM_024628	84561		NM_024628	ENSG00000221955	SLC12A8	CCC9	solute carrier family 12 member 8	protein-coding
193243	chr6	29931421	29931900	+	0	NA	Intergenic	L2a|LINE|L2	-4445	NR_001317	80868		NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B	ncRNA
100224	chr17	59259871	59260030	+	0	NA	intron (NM_001165993, intron 6 of 9)	AluJb|SINE|Alu	39439	NM_182569	284161		NM_182569	ENSG00000153982	GDPD1	GDE4	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding
49552	chr12	26829701	26829900	+	0	NA	intron (NM_002223, intron 1 of 56)	intron (NM_002223, intron 1 of 56)	3394	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
48500	chr12	9858671	9858830	+	0	NA	intron (NM_005127, intron 2 of 4)	(AT)n|Simple_repeat|Simple_repeat	11109	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
213467	chr7	138980901	138982400	+	0	NA	promoter-TSS (NM_020910)	promoter-TSS (NM_020910)	-261	NM_020910	57670		NM_020910	ENSG00000122778	KIAA1549	RP86	KIAA1549	protein-coding
93975	chr17	21771951	21772050	+	0	NA	Intergenic	Intergenic	79477	NM_001194958	100134444		NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium inwardly rectifying channel subfamily J member 18	protein-coding
114346	chr19	12190571	12190930	+	0	NA	TTS (NM_003437)	TTS (NM_003437)	-4265	NR_104179	100289333		NR_104179		LOC100289333	-	uncharacterized LOC100289333	pseudo
230922	chr9	129335451	129335550	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1423	NR_120686	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
140421	chr2	233109921	233110230	+	0	NA	intron (NM_001017915, intron 2 of 26).2	AluSz6|SINE|Alu	49733	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
173620	chr4	11471221	11471980	+	0	NA	Intergenic	AluSz|SINE|Alu	-42706	NM_005114	9957		NM_005114	ENSG00000002587	HS3ST1	3OST|3OST1	heparan sulfate-glucosamine 3-sulfotransferase 1	protein-coding
4313	chr1	20343071	20343950	+	0	NA	intron (NM_001039500, intron 16 of 21)	CpG-589	52635	NM_001039500	127731		NM_144623	ENSG00000158816	VWA5B1	-	von Willebrand factor A domain containing 5B1	protein-coding
57669	chr12	122771901	122772730	+	0	NA	Intergenic	AluJr|SINE|Alu	-2257	NR_027918	84660		NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|SPGF67|TSP-NY	coiled-coil domain containing 62	protein-coding
49044	chr12	14387901	14388100	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	2719	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
211745	chr7	107179471	107179880	+	0	NA	intron (NM_012257, intron 1 of 10)	AluSz|SINE|Alu	10672	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
34114	chr10	126469271	126469630	+	0	NA	intron (NM_001350921, intron 4 of 9)	intron (NM_001350921, intron 4 of 9)	43520	NR_148989	728158		NR_148989	ENSG00000287326	LOC728158	-	uncharacterized LOC728158	ncRNA
155540	chr22	38710771	38711200	+	0	NA	intron (NM_004286, intron 2 of 11)	intron (NM_004286, intron 2 of 11)	5041	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
33205	chr10	113856601	113857000	+	0	NA	intron (NM_198514, intron 1 of 10)	intron (NM_198514, intron 1 of 10)	2139	NM_198514	374354		NM_198514	ENSG00000196865	NHLRC2	FINCA	NHL repeat containing 2	protein-coding
144429	chr20	35446601	35447750	+	0	NA	intron (NM_001319138, intron 1 of 3)	L1PA5|LINE|L1	6922	NR_031620	100302125		NR_031620	ENSG00000221763	MIR1289-1	MIRN1289-1|hsa-mir-1289-1	microRNA 1289-1	ncRNA
44384	chr11	102664371	102664630	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-39168	NM_004771	9313		NM_004771	ENSG00000137674	MMP20	AI2A2|MMP-20	matrix metallopeptidase 20	protein-coding
117726	chr19	29530121	29530580	+	0	NA	intron (NM_001384641, intron 4 of 4)	CpG-14189	1450	NM_001384643	342865		NM_001146339	ENSG00000187135	VSTM2B	-	V-set and transmembrane domain containing 2B	protein-coding
36176	chr11	3169251	3170130	+	0	NA	Intergenic	Intergenic	-4380	NM_145638	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
200276	chr6	132746171	132746330	+	0	NA	intron (NM_078488, intron 7 of 7)	intron (NM_078488, intron 7 of 7)	-11485	NM_001368154	55350		NM_018399	ENSG00000293493	VNN3P	HSA238982|VNN3	vanin 3, pseudogene	pseudo
76909	chr15	78033851	78036100	+	0	NA	intron (NM_144572, intron 3 of 12)	intron (NM_144572, intron 3 of 12)	-40750	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
212574	chr7	128912401	128912600	+	0	NA	Intergenic	Intergenic	-1791	NM_199349	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
80135	chr16	2081901	2082100	+	0	NA	intron (NM_001318832, intron 30 of 39)	intron (NM_001318832, intron 30 of 39)	8284	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
176183	chr4	83388251	83388550	+	0	NA	Intergenic	Intergenic	-53247	NM_001166498	10855		NM_006665	ENSG00000173083	HPSE	HPA|HPA1|HPR1|HPSE1|HSE1	heparanase	protein-coding
115562	chr19	15629071	15629700	+	0	NA	3' UTR (NM_007253, exon 13 of 13)	3' UTR (NM_007253, exon 13 of 13)	-11512	NM_001199208	4051		NM_000896	ENSG00000186529	CYP4F3	CPF3|CYP4F|CYPIVF3|LTB4H	cytochrome P450 family 4 subfamily F member 3	protein-coding
21023	chr1	202960721	202961180	+	0	NA	TTS (NM_016243)	TTS (NM_016243)	-2378	NM_001290629	51094		NM_015999	ENSG00000159346	ADIPOR1	ACDCR1|CGI-45|CGI45|PAQR1|TESBP1A	adiponectin receptor 1	protein-coding
39158	chr11	57321401	57322450	+	0	NA	5' UTR (NM_033396, exon 2 of 12)	5' UTR (NM_033396, exon 2 of 12)	3027	NM_033396	85456		NM_033396	ENSG00000149115	TNKS1BP1	CNOT12|TAB182	tankyrase 1 binding protein 1	protein-coding
121522	chr19	47222821	47223300	+	0	NA	intron (NM_001127242, intron 1 of 1)	AluY|SINE|Alu	-3882	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
215251	chr7	156929751	156930450	+	0	NA	Intergenic	L2|LINE|L2	-19612	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
193821	chr6	31474771	31475530	+	0	NA	Intergenic	Intergenic	3921	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
225204	chr9	34122301	34122900	+	0	NA	intron (NM_015397, intron 2 of 8)	AluSx1|SINE|Alu	4098	NM_015397	25853		NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
38462	chr11	45655101	45655500	+	0	NA	intron (NM_003654, intron 1 of 3)	intron (NM_003654, intron 1 of 3)	10322	NM_003654	8534		NM_003654	ENSG00000175264	CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate sulfotransferase 1	protein-coding
195181	chr6	36030321	36030580	+	0	NA	intron (NM_139014, intron 1 of 10)	AluY|SINE|Alu	2642	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
126730	chr2	30191451	30192430	+	0	NA	Intergenic	Intergenic	4506	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
94330	chr17	28791901	28792300	+	0	NA	intron (NM_001288635, intron 1 of 3)	AluY|SINE|Alu	20371	NM_001288634	55731		NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding
8916	chr1	43982751	43983050	+	0	NA	intron (NM_003780, intron 3 of 6)	L2c|LINE|L2	2395	NM_001005417	8704		NM_003780	ENSG00000117411	B4GALT2	B4Gal-T2|B4Gal-T3|beta4Gal-T2	beta-1,4-galactosyltransferase 2	protein-coding
129533	chr2	69724271	69725000	+	0	NA	intron (NM_001320698, intron 3 of 14)	intron (NM_001320698, intron 3 of 14)	-17499	NM_001320702	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
27557	chr10	32345351	32345450	+	0	NA	non-coding (NR_168506, exon 2 of 2)	non-coding (NR_168506, exon 2 of 2)	1758	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
199298	chr6	112016101	112016500	+	0	NA	Intergenic	L2a|LINE|L2	-37804	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
90182	chr17	356321	356670	+	0	NA	Intergenic	CpG	-3653	NM_001190411	9501		NM_006987	ENSG00000181031	RPH3AL	NOC2	rabphilin 3A like (without C2 domains)	protein-coding
39851	chr11	62378501	62378980	+	0	NA	intron (NM_001083926, intron 4 of 6)	HERVK-int|LTR|ERVK	-40293	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
173174	chr4	6706521	6706780	+	0	NA	Intergenic	Intergenic	3215	NM_203462	114932		NM_152301	ENSG00000178988	MRFAP1L1	PP784	Morf4 family associated protein 1 like 1	protein-coding
203949	chr7	1551771	1551930	+	0	NA	intron (NM_001097620, intron 2 of 8)	AluSz|SINE|Alu	4355	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
86763	chr16	67663351	67664000	+	0	NA	TTS (NM_001037281)	TTS (NM_001037281)	2715	NM_001037281	50855		NM_016948	ENSG00000102981	PARD6A	PAR-6A|PAR6|PAR6C|PAR6alpha|TAX40|TIP-40	par-6 family cell polarity regulator alpha	protein-coding
55935	chr12	109910971	109911200	+	0	NA	exon (NM_032300, exon 9 of 13)	exon (NM_032300, exon 9 of 13)	10508	NM_032300	84260		NM_032300	ENSG00000139437	TCHP	TpMs	trichoplein keratin filament binding	protein-coding
133947	chr2	130563901	130564580	+	0	NA	Intergenic	Intergenic	-6589	NR_033930	646743		NR_033930	ENSG00000290610	PRSS40B	-	serine protease 40B (pseudogene)	pseudo
114073	chr19	11097451	11098100	+	0	NA	intron (NM_001195800, intron 1 of 15)	AluSz|SINE|Alu	-8116	NR_163945	115271120		NR_163945		LDLR-AS1	-	LDLR antisense RNA 1	ncRNA
115475	chr19	15362971	15363930	+	0	NA	intron (NM_005858, intron 9 of 13)	SVA_C|Retroposon|SVA	16337	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
43461	chr11	78079251	78080180	+	0	NA	exon (NM_001203262, exon 1 of 3)	exon (NM_001203262, exon 1 of 3)	147	NM_001203262	100532726		NM_001203260	ENSG00000259112	NDUFC2-KCTD14	-	NDUFC2-KCTD14 readthrough	protein-coding
233197	chr9	137212871	137213030	+	0	NA	intron (NM_014434, intron 3 of 13)	intron (NM_014434, intron 3 of 13)	7250	NM_001144028	27158		NM_014434	ENSG00000188566	NDOR1	CIAE1|NR1|bA350O14.9	NADPH dependent diflavin oxidoreductase 1	protein-coding
103199	chr17	77467221	77467700	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	-8175	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
55457	chr12	104644201	104644930	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	52932	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
84647	chr16	30723651	30723750	+	0	NA	exon (NM_006662, exon 25 of 34)	exon (NM_006662, exon 25 of 34)	13163	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
34535	chr10	132904301	132904900	+	0	NA	intron (NM_001200049, intron 22 of 57)	intron (NM_001200049, intron 22 of 57)	37970	NM_001200049	54777		NM_017609	ENSG00000171811	CFAP46	C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	cilia and flagella associated protein 46	protein-coding
51310	chr12	51307451	51308150	+	0	NA	intron (NM_016293, intron 2 of 12)	intron (NM_016293, intron 2 of 12)	16374	NM_001290009	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
2125	chr1	8276521	8277080	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	-41314	NM_001379614	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
62704	chr13	102847551	102848000	+	0	NA	intron (NM_000123, intron 1 of 14)	intron (NM_000123, intron 1 of 14)	1743	NM_000123	2073		NM_000123	ENSG00000134899	ERCC5	COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC	ERCC excision repair 5, endonuclease	protein-coding
134021	chr2	131043371	131043680	+	0	NA	exon (NM_001375901, exon 13 of 16)	exon (NM_001375901, exon 13 of 16)	49637	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
157378	chr22	44714651	44715150	+	0	NA	intron (NM_001017530, intron 2 of 7)	intron (NM_001017530, intron 2 of 7)	12696	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
57871	chr12	123380921	123381750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2797	NM_001324505	387893		NM_020382	ENSG00000183955	KMT5A	PR-Set7|PR/SET07|SET07|SET8|SETD8	lysine methyltransferase 5A	protein-coding
18956	chr1	168545651	168546130	+	0	NA	Intergenic	L2b|LINE|L2	-1893	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
43800	chr11	86448071	86448230	+	0	NA	exon (NM_001351934, exon 11 of 15)	exon (NM_001351934, exon 11 of 15)	73263	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
1731	chr1	5955021	5955280	+	0	NA	intron (NR_111987, intron 6 of 32)	L1MA6|LINE|L1	37275	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
103042	chr17	77129501	77129900	+	0	NA	intron (NM_001204410, intron 3 of 18)	intron (NM_001204410, intron 3 of 18)	-11269	NM_001143999	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
9263	chr1	46285901	46286600	+	0	NA	exon (NM_006369, exon 4 of 10)	exon (NM_006369, exon 4 of 10)	17366	NM_006369	10489		NM_006369	ENSG00000132128	LRRC41	MUF1|PP7759	leucine rich repeat containing 41	protein-coding
57178	chr12	121434021	121434680	+	0	NA	intron (NM_001005366, intron 21 of 22)	AluSx|SINE|Alu	10002	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
201968	chr6	152181401	152182000	+	0	NA	intron (NM_033071, intron 127 of 145)	L1MB8|LINE|L1	3678	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
125007	chr2	9548251	9549350	+	0	NA	intron (NM_001382778, intron 1 of 18)	intron (NM_001382778, intron 1 of 18)	7030	NM_003183	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
20186	chr1	193065651	193066480	+	0	NA	intron (NM_001042370, intron 1 of 9)	intron (NM_001042370, intron 1 of 9)	-5989	NM_001350852	51377		NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
29291	chr10	69233921	69234180	+	0	NA	intron (NM_025130, intron 4 of 17)	MIR3|SINE|MIR	-1560	NR_120648	101928994		NR_120648	ENSG00000229261	LOC101928994	-	uncharacterized LOC101928994	ncRNA
15976	chr1	151911651	151911950	+	0	NA	Intergenic	Intergenic	-2289	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
186844	chr5	139452071	139452600	+	0	NA	intron (NM_001293739, intron 8 of 9)	(TG)n|Simple_repeat|Simple_repeat	10408	NM_001293739	641700		NM_001077693	ENSG00000249751	ECSCR	ARIA|ECSM2	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding
184905	chr5	112880301	112880780	+	0	NA	intron (NM_005669, intron 4 of 4)	intron (NM_005669, intron 4 of 4)	19253	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
147650	chr20	62217751	62218150	+	0	NA	intron (NM_007232, intron 2 of 2)	intron (NM_007232, intron 2 of 2)	2328	NM_007232	11255		NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
14949	chr1	147670031	147671400	+	0	NA	promoter-TSS (NR_136633)	promoter-TSS (NR_136633)	-191	NR_136635	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
168597	chr3	149145671	149146380	+	0	NA	intron (NM_032383, intron 5 of 16)	MIR3|SINE|MIR	16387	NM_032383	84343		NM_032383	ENSG00000163755	HPS3	BLOC2S1|SUTAL	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding
157901	chr22	49760301	49760700	+	0	NA	Intergenic	L1M2a1|LINE|L1	63831	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
190943	chr6	2894401	2894600	+	0	NA	intron (NM_004155, intron 4 of 6)	intron (NM_004155, intron 4 of 6)	8809	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
103924	chr17	79826401	79826780	+	0	NA	non-coding (NR_146504, exon 3 of 3)	non-coding (NR_146504, exon 3 of 3)	3138	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
59919	chr13	31039101	31039500	+	0	NA	Intergenic	L2a|LINE|L2	106644	NM_001353389	122046		NM_152325	ENSG00000175664	TEX26	C13orf26	testis expressed 26	protein-coding
99566	chr17	50466521	50466780	+	0	NA	intron (NM_001267, intron 1 of 3)	intron (NM_001267, intron 1 of 3)	-1679	NR_110232	80221		NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
114379	chr19	12544121	12544580	+	0	NA	intron (NM_144976, intron 1 of 3)	intron (NM_144976, intron 1 of 3)	7132	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
138740	chr2	214737171	214737550	+	0	NA	intron (NM_001282549, intron 3 of 4)	MIR3|SINE|MIR	72323	NM_001282549	580		NM_000465	ENSG00000138376	BARD1	-	BRCA1 associated RING domain 1	protein-coding
204241	chr7	2551371	2551730	+	0	NA	intron (NM_001350627, intron 2 of 12)	AluJb|SINE|Alu	3974	NR_146879	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
110877	chr19	2632421	2632880	+	0	NA	intron (NM_052847, intron 2 of 4)	MER20|DNA|hAT-Charlie	1935	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
23110	chr1	226679851	226681030	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-5372	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
58477	chr12	132146901	132148000	+	0	NA	intron (NM_024078, intron 4 of 14)	intron (NM_024078, intron 4 of 14)	2993	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
165863	chr3	105930871	105931030	+	0	NA	Intergenic	Intergenic	-61549	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
203588	chr7	922701	924400	+	0	NA	intron (NM_006869, intron 3 of 10)	intron (NM_006869, intron 3 of 10)	-2661	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
226613	chr9	73169451	73169550	+	0	NA	intron (NM_000700, intron 12 of 12)	intron (NM_000700, intron 12 of 12)	17635	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
233222	chr9	137234701	137234930	+	0	NA	intron (NM_080877, intron 12 of 12)	intron (NM_080877, intron 12 of 12)	3882	NM_080877	142680		NM_080877	ENSG00000198569	SLC34A3	HHRH|NPT2C|NPTIIc	solute carrier family 34 member 3	protein-coding
46035	chr11	122670101	122670680	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	14668	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
82256	chr16	15132051	15133750	+	0	NA	non-coding (NR_123721, exon 10 of 29)	non-coding (NR_123721, exon 10 of 29)	1245	NR_106965	102465985		NR_106965	ENSG00000283346	MIR6511B2	MIR6511B-2|hsa-mir-6511b-2	microRNA 6511b-2	ncRNA
147900	chr20	62889101	62889580	+	0	NA	3' UTR (NM_080797, exon 15 of 15)	3' UTR (NM_080797, exon 15 of 15)	-6437	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
184655	chr5	107539701	107539980	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	131097	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
201996	chr6	152485721	152486000	+	0	NA	intron (NM_033071, intron 12 of 145)	intron (NM_033071, intron 12 of 145)	105330	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
157651	chr22	46125701	46126100	+	0	NA	Intergenic	Intergenic	12214	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
78764	chr15	99156071	99156230	+	0	NA	exon (NM_001353869, exon 11 of 13)	exon (NM_001353869, exon 11 of 13)	51070	NM_145728	23336		NM_015286	ENSG00000182253	SYNM	DMN|SYN	synemin	protein-coding
39396	chr11	60532621	60532750	+	0	NA	intron (NM_001100909, intron 5 of 5)	L1PA2|LINE|L1	17293	NM_001012417	503497		NM_001012417	ENSG00000204979	MS4A13	-	membrane spanning 4-domains A13	protein-coding
224416	chr9	15126771	15127130	+	0	NA	Intergenic	LTR8A|LTR|ERV1	123268	NM_001168342	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
101146	chr17	65050201	65050630	+	0	NA	intron (NM_001282425, intron 2 of 3)	L2a|LINE|L2	5359	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
150952	chr21	44304821	44305550	+	0	NA	intron (NM_001002021, intron 2 of 24)	MIRc|SINE|MIR	5132	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
227469	chr9	91099771	91100780	+	0	NA	Intergenic	Intergenic	-18787	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
10049	chr1	58624571	58624730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-47398	NM_002353	4070		NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor associated calcium signal transducer 2	protein-coding
81632	chr16	10880351	10880450	+	0	NA	intron (NM_001379334, intron 1 of 19)	intron (NM_001379334, intron 1 of 19)	1433	NM_001379334	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
201640	chr6	149468021	149468480	+	0	NA	intron (NM_207360, intron 2 of 5)	AluSp|SINE|Alu	16764	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
29562	chr10	71531651	71531750	+	0	NA	intron (NM_001171931, intron 6 of 24)	intron (NM_001171931, intron 6 of 24)	-19780	NR_120672	102723377		NR_120672	ENSG00000223817	CDH23-AS1	C10orf106|NCRNA00223|bA327E2.3	CDH23 antisense RNA 1	ncRNA
173402	chr4	8046701	8047300	+	0	NA	intron (NM_001286688, intron 3 of 14)	MLT1B|LTR|ERVL-MaLR	24988	NM_001286688	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
136662	chr2	180604251	180604350	+	0	NA	Intergenic	Intergenic	-87804	NR_104323	101669767		NR_104319	ENSG00000281131	SCHLAP1	LINC00913|PCAT11|PCAT114	SWI/SNF complex antagonist associated with prostate cancer 1	ncRNA
145325	chr20	41089151	41089450	+	0	NA	intron (NM_003286, intron 8 of 20)	AluSx1|SINE|Alu	-48243	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
161481	chr3	42443601	42444150	+	0	NA	Intergenic	MIR|SINE|MIR	-33265	NM_001304386	131375		NM_144634	ENSG00000157093	LYZL4	LYC4|LYZA	lysozyme like 4	protein-coding
148162	chr20	63524521	63525180	+	0	NA	Intergenic	AluSz6|SINE|Alu	4085	NM_024299	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
70747	chr14	103392971	103393400	+	0	NA	intron (NM_002376, intron 1 of 15)	AluSq4|SINE|Alu	7770	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
150602	chr21	43359001	43359200	+	0	NA	non-coding (NR_131902, exon 2 of 2)	non-coding (NR_131902, exon 2 of 2)	3249	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
3189	chr1	13724671	13725080	+	0	NA	intron (NM_001135610, intron 2 of 7)	intron (NM_001135610, intron 2 of 7)	20020	NM_012231	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
91685	chr17	5771851	5771950	+	0	NA	promoter-TSS (NR_040000)	promoter-TSS (NR_040000)	-334	NR_040000	339166		NR_040000	ENSG00000284837	LOC339166	-	uncharacterized LOC339166	ncRNA
119559	chr19	40614701	40615550	+	0	NA	intron (NM_001042544, intron 22 of 32)	intron (NM_001042544, intron 22 of 32)	13756	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
229667	chr9	124403371	124403930	+	0	NA	intron (NM_002799, intron 5 of 7)	MIRb|SINE|MIR	11792	NM_002799	5695		NM_002799	ENSG00000136930	PSMB7	-	proteasome 20S subunit beta 7	protein-coding
230450	chr9	128173051	128173350	+	0	NA	intron (NM_001257975, intron 11 of 17)	AluY|SINE|Alu	12935	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
168411	chr3	142275371	142275530	+	0	NA	Intergenic	Intergenic	-49865	NM_001039547	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
226714	chr9	75144171	75144330	+	0	NA	intron (NM_012383, intron 9 of 9)	intron (NM_012383, intron 9 of 9)	55736	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
113208	chr19	8452751	8453150	+	0	NA	intron (NM_031203, intron 1 of 16)	AluJr|SINE|Alu	7975	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
61092	chr13	48412951	48413630	+	0	NA	promoter-TSS (NM_001162498)	promoter-TSS (NM_001162498)	-177	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
191590	chr6	12039871	12040250	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	27748	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
199266	chr6	111858851	111858950	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	14171	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
9618	chr1	52405721	52406630	+	0	NA	intron (NM_032864, intron 2 of 9)	AluSx|SINE|Alu	1573	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
12515	chr1	108272651	108272980	+	0	NA	Intergenic	CpG	-28734	NM_001143989	148545		NM_152488	ENSG00000196427	NBPF4	-	NBPF member 4	protein-coding
101353	chr17	67152971	67153130	+	0	NA	intron (NM_001330447, intron 17 of 32)	L2|LINE|L2	-91726	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
116029	chr19	17178121	17178380	+	0	NA	intron (NM_004145, intron 14 of 39)	intron (NM_004145, intron 14 of 39)	-37107	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
87618	chr16	74382221	74383230	+	0	NA	intron (NM_001306094, intron 2 of 6)	intron (NM_001306094, intron 2 of 6)	4773	NM_001306094	440348		NM_001018059	ENSG00000196436	NPIPB15	A-761H5.4|NPIPL2	nuclear pore complex interacting protein family member B15	protein-coding
65779	chr14	54487651	54487750	+	0	NA	intron (NM_004124, intron 1 of 6)	AluSq2|SINE|Alu	1280	NM_004124	2764		NM_004124	ENSG00000197045	GMFB	GMF	glia maturation factor beta	protein-coding
13680	chr1	116595251	116595650	+	0	NA	intron (NM_001007237, intron 7 of 10)	intron (NM_001007237, intron 7 of 10)	-24357	NM_001144822	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
61771	chr13	74555521	74555780	+	0	NA	non-coding (NR_034024, exon 3 of 3)	non-coding (NR_034024, exon 3 of 3)	2807	NR_034025	338864		NR_034024	ENSG00000236678	LINC00347	-	long intergenic non-protein coding RNA 347	ncRNA
69353	chr14	93988471	93988830	+	0	NA	Intergenic	Intergenic	-8620	NR_024182	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
136908	chr2	189655971	189656330	+	0	NA	Intergenic	L1MCc|LINE|L1	-5249	NM_001353494	110599588		NM_001353493	ENSG00000286053	ASDURF	ASNSD1|ASNSD1-SEP|NS3TP1	ASNSD1 upstream open reading frame	protein-coding
213501	chr7	139059801	139060230	+	0	NA	TTS (NM_024625)	TTS (NM_024625)	-15858	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
64746	chr14	34550901	34551730	+	0	NA	Intergenic	AluSx1|SINE|Alu	4601	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
238354	chrX	149746501	149746730	+	0	NA	Intergenic	Intergenic	-27453	NM_016153	100506164		NM_016153	ENSG00000171116	HSFX1	LW-1	heat shock transcription factor family, X-linked 1	protein-coding
120131	chr19	42204971	42205130	+	0	NA	intron (NR_073046, intron 3 of 4)	L1MC5|LINE|L1	12627	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
223554	chr8	144234551	144234650	+	0	NA	intron (NM_032450, intron 14 of 43)	AluSx1|SINE|Alu	28137	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
103000	chr17	76759301	76759500	+	0	NA	intron (NR_148239, intron 8 of 12)	AluSx1|SINE|Alu	21722	NM_001242532	79157		NM_024311	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
99783	chr17	51152901	51154900	+	0	NA	intron (NM_001018136, intron 1 of 7)	L2c|LINE|L2	341	NM_198175	4830		NM_000269	ENSG00000239672	NME1	AWD|GAAD|NB|NBS|NDKA|NDPK-A|NDPKA|NM23|NM23-H1	NME/NM23 nucleoside diphosphate kinase 1	protein-coding
15273	chr1	149697651	149697750	+	0	NA	Intergenic	Intergenic	-3404	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
119777	chr19	41309701	41310980	+	0	NA	promoter-TSS (NM_001346100)	promoter-TSS (NM_001346100)	-137	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
148158	chr20	63519761	63521450	+	0	NA	promoter-TSS (NM_001353423)	promoter-TSS (NM_001353423)	-136	NR_148427	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
144676	chr20	36399621	36399900	+	0	NA	intron (NM_001365621, intron 2 of 12)	intron (NM_001365621, intron 2 of 12)	-61708	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
136658	chr2	180358871	180359030	+	0	NA	Intergenic	L1PBb|LINE|L1	-333154	NR_104323	101669767		NR_104319	ENSG00000281131	SCHLAP1	LINC00913|PCAT11|PCAT114	SWI/SNF complex antagonist associated with prostate cancer 1	ncRNA
167633	chr3	129597951	129598900	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	8251	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
150968	chr21	44322851	44323130	+	0	NA	exon (NM_002626, exon 15 of 22)	exon (NM_002626, exon 15 of 22)	15348	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
19177	chr1	171851051	171851150	+	0	NA	intron (NM_001350204, intron 1 of 20)	intron (NM_001350204, intron 1 of 20)	9602	NM_001350204	26052		NM_015569	ENSG00000197959	DNM3	Dyna III	dynamin 3	protein-coding
15086	chr1	148517071	148517630	+	0	NA	Intergenic	Intergenic	-34048	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
172101	chr4	1056951	1057050	+	0	NA	exon (NM_001366919, exon 11 of 12)	exon (NM_001366919, exon 11 of 12)	44536	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
147024	chr20	53595821	53596480	+	0	NA	Intergenic	Intergenic	-2311	NM_006526	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
82953	chr16	21888821	21889300	+	0	NA	Intergenic	Intergenic	-22325	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
195299	chr6	36539921	36541000	+	0	NA	intron (NM_007271, intron 1 of 13)	L1ME5|LINE|L1	7019	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
151276	chr21	45455351	45455650	+	0	NA	promoter-TSS (NM_130444)	promoter-TSS (NM_130444)	-22	NM_030582	80781		NM_030582	ENSG00000182871	COL18A1	GLCC|KNO|KNO1|KS	collagen type XVIII alpha 1 chain	protein-coding
47057	chr12	548621	549080	+	0	NA	intron (NM_173593, intron 9 of 19)	AluJo|SINE|Alu	37636	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
146473	chr20	49768501	49769130	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-43898	NM_001260491	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
61948	chr13	78662551	78662730	+	0	NA	Intergenic	Intergenic	-3485	NM_024546	79596		NM_024546	ENSG00000152193	OBI1	C13orf7|RNF219	ORC ubiquitin ligase 1	protein-coding
181994	chr5	55227121	55228950	+	0	NA	promoter-TSS (NM_001190787)	promoter-TSS (NM_001190787)	-720	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
216922	chr8	22717151	22717880	+	0	NA	intron (NM_001363233, intron 6 of 6)	intron (NM_001363233, intron 6 of 6)	-24035	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
102328	chr17	75402751	75403050	+	0	NA	intron (NM_203506, intron 1 of 4)	AluSp|SINE|Alu	2778	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
103281	chr17	77782871	77783030	+	0	NA	Intergenic	Intergenic	-54391	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
81407	chr16	8591171	8591480	+	0	NA	promoter-TSS (NM_001290097)	promoter-TSS (NM_001290097)	-814	NM_001290097	283953		NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
139145	chr2	219056571	219057180	+	0	NA	intron (NM_002181, intron 2 of 2)	intron (NM_002181, intron 2 of 2)	1875	NR_036081	100422957		NR_036081	ENSG00000264755	MIR3131	mir-3131	microRNA 3131	ncRNA
99821	chr17	54967851	54969550	+	0	NA	promoter-TSS (NM_004375)	promoter-TSS (NM_004375)	-46	NR_135677	1353		NM_004375	ENSG00000166260	COX11	COX11P|MC4DN23	cytochrome c oxidase copper chaperone COX11	protein-coding
222637	chr8	141124271	141124430	+	0	NA	Intergenic	MIRc|SINE|MIR	-4239	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
37630	chr11	20385951	20386250	+	0	NA	Intergenic	Intergenic	-1430	NM_001145166	10196		NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
104548	chr17	81304921	81305180	+	0	NA	non-coding (NR_038080, exon 4 of 4)	non-coding (NR_038080, exon 4 of 4)	4198	NR_038080	284185		NM_178519		LINC00482	C17orf55	long intergenic non-protein coding RNA 482	ncRNA
41523	chr11	66268201	66269780	+	0	NA	intron (NM_030981, intron 1 of 5)	CpG	351	NM_030981	81876		NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
143484	chr20	31066671	31067250	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-190704	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
155935	chr22	39661921	39663880	+	0	NA	intron (NM_001003406, intron 17 of 35)	intron (NM_001003406, intron 17 of 35)	92147	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
206846	chr7	37365271	37365780	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	-11857	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
192236	chr6	19660121	19660200	+	0	NA	Intergenic	Intergenic	144599	NR_134650	100506885		NR_134649	ENSG00000228412	LNC-LBCS	LBCS	lncRNA bladder and prostate cancer suppressor, hnRNPK interacting	ncRNA
167734	chr3	131361371	131362200	+	0	NA	promoter-TSS (NR_002949)	promoter-TSS (NR_002949)	-60	NR_002949	152195		NM_194289	ENSG00000293492	NUDT16L2P	NUDT16P|NUDT16P1	nudix hydrolase 16 like 2, pseudogene	pseudo
50734	chr12	48986071	48987130	+	0	NA	Intergenic	Intergenic	8278	NM_005430	7471		NM_005430	ENSG00000125084	WNT1	BMND16|INT1|OI15	Wnt family member 1	protein-coding
53341	chr12	64637221	64637800	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSz6|SINE|Alu	-14905	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
99128	chr17	49230171	49231400	+	0	NA	promoter-TSS (NM_178500)	promoter-TSS (NM_178500)	2	NM_178500	162466		NM_178500	ENSG00000173868	PHOSPHO1	-	phosphoethanolamine/phosphocholine phosphatase 1	protein-coding
25149	chr10	4656601	4656850	+	0	NA	intron (NR_015425, intron 1 of 2)	intron (NR_015425, intron 1 of 2)	569	NR_015425	338588		NR_015425	ENSG00000225269	LINC00705	-	long intergenic non-protein coding RNA 705	ncRNA
21141	chr1	203670351	203670650	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	42563	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
54825	chr12	94818451	94818550	+	0	NA	Intergenic	MER50|LTR|ERV1	-15898	NR_030171	574449		NR_030171	ENSG00000283998	MIR492	MIRN492|hsa-mir-492	microRNA 492	ncRNA
181129	chr5	37722701	37723350	+	0	NA	intron (NM_018034, intron 15 of 17)	intron (NM_018034, intron 15 of 17)	111797	NM_001278098	2668		NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
24176	chr1	235879951	235880550	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	3458	NM_001301365	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
150640	chr21	43401521	43401780	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	25481	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
96103	chr17	39627021	39628450	+	0	NA	promoter-TSS (NM_001242464)	promoter-TSS (NM_001242464)	-768	NM_181505	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
73427	chr15	43108101	43108300	+	0	NA	Intergenic	Intergenic	-2162	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
89094	chr16	88482071	88482330	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	13282	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
201952	chr6	151807201	151807400	+	0	NA	promoter-TSS (NM_000125)	promoter-TSS (NM_000125)	104	NM_001122740	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
124267	chr19	57768571	57768730	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-1002	NM_001204814	54807		NM_017652	ENSG00000083828	ZNF586	-	zinc finger protein 586	protein-coding
162086	chr3	46889701	46890280	+	0	NA	intron (NM_001184744, intron 2 of 14)	intron (NM_001184744, intron 2 of 14)	7741	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
189471	chr5	173064221	173064600	+	0	NA	intron (NM_001168393, intron 1 of 3)	AluJb|SINE|Alu	8058	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
9970	chr1	54810151	54810800	+	0	NA	intron (NM_001110533, intron 4 of 9)	intron (NM_001110533, intron 4 of 9)	4412	NM_001110533	163747		NM_152607	ENSG00000162398	CIMAP2	C1orf177|LEM|LEXM	ciliary microtubule associated protein 2	protein-coding
194160	chr6	32049251	32049550	+	0	NA	exon (NM_001365276, exon 28 of 44).4	exon (NM_001365276, exon 28 of 44).4	-3272	NM_032470	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
77409	chr15	83208971	83209350	+	0	NA	Intergenic	CR1_Mam|LINE|CR1	-1337	NM_016073	50810		NM_016073	ENSG00000166503	HDGFL3	CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3	HDGF like 3	protein-coding
40	chr1	192971	193580	+	0	NA	Intergenic	Intergenic	-5317	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
43289	chr11	76132471	76132630	+	0	NA	intron (NM_003369, intron 14 of 14)	intron (NM_003369, intron 14 of 14)	73952	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
33217	chr10	114045251	114046050	+	0	NA	3' UTR (NM_000684, exon 1 of 1)	3' UTR (NM_000684, exon 1 of 1)	1784	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
142997	chr20	20360451	20360950	+	0	NA	TTS (NM_015585)	TTS (NM_015585)	-7404	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
218728	chr8	58723921	58724200	+	0	NA	Intergenic	Intergenic	-64207	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
204082	chr7	2099071	2100330	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-10648	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
49062	chr12	14407951	14408880	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	23134	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
216044	chr8	9665151	9665250	+	0	NA	intron (NM_003747, intron 3 of 26)	intron (NM_003747, intron 3 of 26)	-76472	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
160207	chr3	23914371	23914530	+	0	NA	intron (NM_001377358, intron 1 of 5)	intron (NM_001377358, intron 1 of 5)	-2095	NM_001253379	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
128499	chr2	59354221	59354350	+	0	NA	Intergenic	Intergenic	136577	NR_110219	101927285		NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
21848	chr1	207364801	207365200	+	0	NA	Intergenic	L1MC4a|LINE|L1	43322	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
201602	chr6	149358551	149358850	+	0	NA	intron (NM_001369506, intron 2 of 7)	L1MEd|LINE|L1	40400	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
208253	chr7	65571971	65572130	+	0	NA	Intergenic	L2a|LINE|L2	-16985	NR_157838	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
43938	chr11	93525851	93526150	+	0	NA	intron (NM_020179, intron 1 of 2)	intron (NM_020179, intron 1 of 2)	17391	NM_020179	56935		NM_020179	ENSG00000166002	SMCO4	C11orf75|FN5	single-pass membrane protein with coiled-coil domains 4	protein-coding
190011	chr5	177478921	177479700	+	0	NA	Intergenic	Intergenic	-5676	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
86586	chr16	67243171	67243330	+	0	NA	intron (NM_001318202, intron 1 of 23)	intron (NM_001318202, intron 1 of 23)	4231	NM_001318202	29109		NM_013241	ENSG00000135723	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
173440	chr4	8237001	8237400	+	0	NA	intron (NM_001318480, intron 16 of 17)	intron (NM_001318480, intron 16 of 17)	-32554	NM_053044	94031		NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
140641	chr2	233474221	233474480	+	0	NA	Intergenic	Intergenic	15548	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
1802	chr1	6198721	6200450	+	0	NA	promoter-TSS (NM_000983)	promoter-TSS (NM_000983)	10	NM_000983	6146		NM_000983	ENSG00000116251	RPL22	EAP|HBP15|HBP15/L22|L22|eL22	ribosomal protein L22	protein-coding
69634	chr14	97718701	97719150	+	0	NA	Intergenic	Intergenic	-32267	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
122563	chr19	49663251	49665000	+	0	NA	intron (NM_001197127, intron 1 of 5)	FLAM_C|SINE|Alu	-1017	NM_001282519	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
131254	chr2	96025521	96025780	+	0	NA	intron (NM_207328, intron 12 of 21)	intron (NM_207328, intron 12 of 21)	9595	NM_001321530	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
92541	chr17	8947601	8947800	+	0	NA	intron (NM_001142633, intron 1 of 18)	L3|LINE|CR1	18007	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
237441	chrX	119682051	119683150	+	0	NA	intron (NM_145799, intron 1 of 10)	intron (NM_145799, intron 1 of 10)	10568	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
136371	chr2	176104271	176104850	+	0	NA	Intergenic	CpG	-2720	NM_021192	3237		NM_021192	ENSG00000128713	HOXD11	HOX4|HOX4F	homeobox D11	protein-coding
116247	chr19	17579671	17580530	+	0	NA	intron (NM_024656, intron 10 of 11)	intron (NM_024656, intron 10 of 11)	24451	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
6345	chr1	27727571	27727730	+	0	NA	intron (NM_001143914, intron 2 of 7)	intron (NM_001143914, intron 2 of 7)	1689	NM_001143915	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
147942	chr20	62939851	62940500	+	0	NA	intron (NM_017896, intron 1 of 4)	AluYh3|SINE|Alu	2028	NM_017896	54994		NM_017896	ENSG00000101193	GID8	C20orf11|TWA1	GID complex subunit 8 homolog	protein-coding
94172	chr17	28416751	28417150	+	0	NA	Intergenic	Intergenic	-10738	NM_080669	113235		NM_080669	ENSG00000076351	SLC46A1	G21|HCP1|HsPCFT|PCFT|hPCFT	solute carrier family 46 member 1	protein-coding
232512	chr9	136307821	136308080	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-1049	NM_001291516	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
203311	chr6	170147151	170147250	+	0	NA	Intergenic	Intergenic	-13442	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
75242	chr15	64891751	64892690	+	0	NA	Intergenic	Intergenic	-19682	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
10616	chr1	67831921	67832180	+	0	NA	promoter-TSS (NR_040077)	promoter-TSS (NR_040077)	-238	NR_040077	100289178		NR_040077	ENSG00000232284	GNG12-AS1	-	GNG12, DIRAS3 and WLS antisense RNA 1	ncRNA
26535	chr10	21515721	21516310	+	0	NA	exon (NM_207371, exon 4 of 4)	exon (NM_207371, exon 4 of 4)	9667	NM_207371	387640		NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
178585	chr4	151362621	151363030	+	0	NA	Intergenic	Intergenic	-37220	NM_001378122	152503		NM_001009555	ENSG00000109686	SH3D19	EBP|EVE1|Eve-1|Kryn|SH3P19	SH3 domain containing 19	protein-coding
231057	chr9	129634721	129635000	+	0	NA	3' UTR (NM_001202403, exon 5 of 5)	3' UTR (NM_001202403, exon 5 of 5)	7291	NM_177999	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
101059	chr17	64832501	64832700	+	0	NA	intron (NR_024386, intron 1 of 10)	AluSz|SINE|Alu	4584	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
116323	chr19	17824451	17824900	+	0	NA	TTS (NM_000215)	TTS (NM_000215)	-3156	NM_001265587	3640		NM_005543	ENSG00000248099	INSL3	RLF|RLNL|ley-I-L	insulin like 3	protein-coding
48648	chr12	10412551	10412850	+	0	NA	intron (NM_002261, intron 6 of 6)	AluJb|SINE|Alu	-2554	NM_001199805	100528032		NM_001199805		KLRC4-KLRK1	-	KLRC4-KLRK1 readthrough	protein-coding
68759	chr14	91057851	91058250	+	0	NA	intron (NM_001322235, intron 1 of 17)	intron (NM_001322235, intron 1 of 17)	2074	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
115558	chr19	15555741	15557100	+	0	NA	Intergenic	Intergenic	47895	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
180274	chr5	1795821	1796080	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	3887	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
171515	chr3	196640711	196641080	+	0	NA	intron (NM_198565, intron 1 of 2)	intron (NM_198565, intron 1 of 2)	1201	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
104989	chr17	82010601	82011350	+	0	NA	intron (NR_045351, intron 9 of 14)	(CTCCAGGC)n|Simple_repeat|Simple_repeat	11903	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
234987	chrX	39688621	39689130	+	0	NA	Intergenic	CpG	27659	NR_037501	100500822		NR_037501	ENSG00000263730	MIR3937	-	microRNA 3937	ncRNA
224064	chr9	3647751	3647850	+	0	NA	Intergenic	Intergenic	-20286	NR_121586	101929302		NR_121586	ENSG00000232104	RFX3-DT	CVAT7|RFX3-AS1	RFX3 divergent transcript	ncRNA
18253	chr1	161061301	161061580	+	0	NA	intron (NM_001025598, intron 1 of 11)	AluSx|SINE|Alu	8451	NM_181720	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
40374	chr11	63993001	63993600	+	0	NA	intron (NR_003089, intron 3 of 5)	L2a|LINE|L2	7447	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
110916	chr19	2774471	2774630	+	0	NA	intron (NM_003021, intron 1 of 11)	CpG	8723	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
150996	chr21	44359571	44359730	+	0	NA	intron (NM_001320350, intron 2 of 32)	LTR12_|LTR|ERV1	6049	NM_001320350	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
16397	chr1	154420251	154420880	+	0	NA	intron (NM_001206866, intron 1 of 6)	AluSz|SINE|Alu	-14001	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
98389	chr17	46555951	46556430	+	0	NA	TTS (NM_001006607).2	TTS (NM_001006607).2	23501	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
138702	chr2	213108371	213108530	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	41987	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
163878	chr3	52505121	52505380	+	0	NA	intron (NM_015136, intron 13 of 68)	intron (NM_015136, intron 13 of 68)	9912	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
109641	chr19	998901	999430	+	0	NA	Intergenic	Intergenic	-1254	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
45403	chr11	118343971	118344800	+	0	NA	promoter-TSS (NM_000073)	promoter-TSS (NM_000073)	41	NM_000073	917		NM_000073	ENSG00000160654	CD3G	CD3-GAMMA|CD3GAMMA|IMD17|T3G	CD3 gamma subunit of T-cell receptor complex	protein-coding
72686	chr15	38556001	38556630	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	8499	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
11970	chr1	94073001	94073200	+	0	NA	intron (NM_000350, intron 11 of 49)	intron (NM_000350, intron 11 of 49)	48048	NM_000350	24		NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
98187	chr17	46108801	46109300	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluJo|SINE|Alu	83732	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
161898	chr3	45967121	45967380	+	0	NA	exon (NM_024513, exon 8 of 18)	exon (NM_024513, exon 8 of 18)	23786	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
6929	chr1	31669801	31670550	+	0	NA	intron (NM_001856, intron 49 of 70)	intron (NM_001856, intron 49 of 70)	-25299	NM_012392	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
48426	chr12	9682821	9683150	+	0	NA	intron (NM_013269, intron 2 of 4)	L1PA7|LINE|L1	13272	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
16199	chr1	153848871	153849050	+	0	NA	intron (NM_020699, intron 1 of 10)	AluSg7|SINE|Alu	55013	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
174105	chr4	36189421	36190180	+	0	NA	intron (NR_146894, intron 7 of 32)	intron (NR_146894, intron 7 of 32)	54139	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
22824	chr1	225319001	225319230	+	0	NA	intron (NM_001367479, intron 61 of 85)	intron (NM_001367479, intron 61 of 85)	108923	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
60230	chr13	40553121	40553580	+	0	NA	Intergenic	Intergenic	-72344	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
136877	chr2	189094321	189094620	+	0	NA	intron (NM_000393, intron 6 of 53)	intron (NM_000393, intron 6 of 53)	38641	NR_036076	100422908		NR_036076	ENSG00000264725	MIR3129	mir-3129	microRNA 3129	ncRNA
206879	chr7	37659801	37660400	+	0	NA	Intergenic	Intergenic	-23666	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
237712	chrX	124725301	124725700	+	0	NA	intron (NM_001163279, intron 4 of 31)	intron (NM_001163279, intron 4 of 31)	238317	NM_001163279	10178		NM_014253	ENSG00000009694	TENM1	ODZ1|ODZ3|TEN-M1|TEN1|TNM|TNM1|ten-1	teneurin transmembrane protein 1	protein-coding
77670	chr15	85585071	85585500	+	0	NA	intron (NM_007200, intron 7 of 36)	intron (NM_007200, intron 7 of 36)	-34665	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
117961	chr19	33286701	33287200	+	0	NA	Intergenic	LTR33|LTR|ERVL	15584	NM_004364	1050		NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	CCAAT enhancer binding protein alpha	protein-coding
133819	chr2	127853601	127853800	+	0	NA	intron (NM_004805, intron 1 of 3)	AluJb|SINE|Alu	4455	NM_004805	5433		NM_004805	ENSG00000144231	POLR2D	HSRBP4|HSRPB4|RBP4|RPB16|RPB4	RNA polymerase II subunit D	protein-coding
100981	chr17	64542721	64542980	+	0	NA	3' UTR (NM_022739, exon 19 of 19)	3' UTR (NM_022739, exon 19 of 19)	35873	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
30467	chr10	79148971	79149130	+	0	NA	intron (NM_020338, intron 3 of 24)	intron (NM_020338, intron 3 of 24)	80084	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
203817	chr7	1370121	1370380	+	0	NA	Intergenic	Intergenic	89220	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
114153	chr19	11339051	11339930	+	0	NA	5' UTR (NM_004283, exon 1 of 5)	5' UTR (NM_004283, exon 1 of 5)	167	NM_004283	9545		NM_004283	ENSG00000105514	RAB3D	D2-2|GOV|RAB16|RAD3D	RAB3D, member RAS oncogene family	protein-coding
62677	chr13	102609801	102610200	+	0	NA	intron (NR_160411, intron 2 of 28)	intron (NR_160411, intron 2 of 28)	13014	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
44697	chr11	111526451	111526820	+	0	NA	intron (NM_207430, intron 4 of 6)	L2b|LINE|L2	11850	NM_207430	399949		NM_207430	ENSG00000183644	HOATZ	C11orf88	HOATZ cilia and flagella associated protein	protein-coding
191707	chr6	13673221	13673480	+	0	NA	intron (NM_005493, intron 2 of 13)	L1MCa|LINE|L1	38485	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
213386	chr7	135974471	135974630	+	0	NA	intron (NM_001128619, intron 1 of 3)	intron (NM_001128619, intron 1 of 3)	2809	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
18773	chr1	167511771	167512000	+	0	NA	intron (NM_001378515, intron 1 of 8)	MIRc|SINE|MIR	6644	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
158324	chr22	50438271	50439380	+	0	NA	intron (NM_001351641, intron 19 of 23)	intron (NM_001351641, intron 19 of 23)	31383	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
5797	chr1	26553021	26553280	+	0	NA	intron (NM_001006665, intron 5 of 20)	L1MC5a|LINE|L1	-1392	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
85527	chr16	51577601	51577850	+	0	NA	Intergenic	Intergenic	-184794	NR_110916	101927364		NR_110916		LINC01571	-	long intergenic non-protein coding RNA 1571	ncRNA
151249	chr21	45301801	45303180	+	0	NA	Intergenic	Intergenic	14438	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
127664	chr2	43169801	43171330	+	0	NA	Intergenic	Intergenic	56041	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
229872	chr9	126489121	126489380	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-78746	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
68279	chr14	77094651	77095280	+	0	NA	Intergenic	Intergenic	-3293	NM_033426	85457		NM_033426	ENSG00000198894	CIPC	KIAA1737	CLOCK interacting pacemaker	protein-coding
216450	chr8	19513801	19514200	+	0	NA	intron (NM_001354497, intron 1 of 7)	intron (NM_001354497, intron 1 of 7)	88545	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
168700	chr3	150630671	150630830	+	0	NA	TTS (NM_016275)	TTS (NM_016275)	27429	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
27067	chr10	27153801	27154700	+	0	NA	5' UTR (NM_014263, exon 1 of 19)	5' UTR (NM_014263, exon 1 of 19)	134	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
117855	chr19	32345171	32346780	+	0	NA	intron (NM_014910, intron 1 of 5)	intron (NM_014910, intron 1 of 5)	365	NM_001136156	22847		NM_014910	ENSG00000168813	ZNF507	Zfp507	zinc finger protein 507	protein-coding
63692	chr14	21092121	21093180	+	0	NA	exon (NM_001102454, exon 3 of 5)	exon (NM_001102454, exon 3 of 5)	6005	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
239482	chrY	56742521	56743200	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-211395	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
3995	chr1	18917171	18917730	+	0	NA	intron (NM_001136265, intron 4 of 8)	intron (NM_001136265, intron 4 of 8)	-14651	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
197066	chr6	53718821	53719230	+	0	NA	Intergenic	Intergenic	-53269	NM_001003760	401265		NM_001003760	ENSG00000124743	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch like family member 31	protein-coding
71484	chr14	105981221	105982530	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-9606	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
144649	chr20	36052451	36052750	+	0	NA	Intergenic	AluSg4|SINE|Alu	-1640	NR_027451	647979		NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
149981	chr21	36705251	36705350	+	0	NA	intron (NM_005069, intron 1 of 10)	CpG	6185	NM_009586	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
198959	chr6	110878701	110879930	+	0	NA	intron (NM_001287216, intron 1 of 4)	AluJb|SINE|Alu	4531	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
194019	chr6	31819321	31819980	+	0	NA	Intergenic	Intergenic	4107	NM_005345	3303		NM_005345	ENSG00000204389	HSPA1A	HEL-S-103|HSP70|HSP70-1|HSP70-1A|HSP70-2|HSP70.1|HSP70.2|HSP70I|HSP72|HSPA1	heat shock protein family A (Hsp70) member 1A	protein-coding
173054	chr4	5812901	5813100	+	0	NA	3' UTR (NM_001306090, exon 21 of 21)	3' UTR (NM_001306090, exon 21 of 21)	74813	NM_001288662	1400		NM_001313	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding
105392	chr17	82735071	82736100	+	0	NA	promoter-TSS (NM_022158)	promoter-TSS (NM_022158)	-30	NM_022158	64122		NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
93085	chr17	17628171	17629230	+	0	NA	Intergenic	Intergenic	-36992	NM_001267551	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
62368	chr13	99226321	99227150	+	0	NA	intron (NR_026644, intron 1 of 8)	L2a|LINE|L2	25881	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
159980	chr3	17964171	17964330	+	0	NA	intron (NR_161333, intron 1 of 4)	intron (NR_161333, intron 1 of 4)	1698	NR_161333	339862		NR_046199		BALR6	BALR-6	B-cell acute lymphoblastic leukemia associated long RNA 6	ncRNA
127763	chr2	44044241	44044930	+	0	NA	Intergenic	Intergenic	-48596	NM_133259	10128		NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC|MC4DN5	leucine rich pentatricopeptide repeat containing	protein-coding
89968	chr16	89816051	89817180	+	0	NA	promoter-TSS (NM_000135)	promoter-TSS (NM_000135)	32	NM_001286167	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
107682	chr18	49412751	49413050	+	0	NA	intron (NM_001374431, intron 2 of 16)	intron (NM_001374431, intron 2 of 16)	47745	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
110662	chr19	2251321	2252270	+	0	NA	TTS (NM_144616)	TTS (NM_144616)	1156	NR_036207	100423031		NR_036207	ENSG00000284272	MIR4321	-	microRNA 4321	ncRNA
183038	chr5	73296871	73297050	+	0	NA	Intergenic	Intergenic	-40946	NR_146627	105379033		NR_146627		LINC02230	-	long intergenic non-protein coding RNA 2230	ncRNA
25347	chr10	6274071	6274230	+	0	NA	Intergenic	AluJo|SINE|Alu	-52394	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
38444	chr11	45280471	45280850	+	0	NA	intron (NM_001247987, intron 1 of 7)	L1ME3A|LINE|L1	5681	NM_001247987	57586		NM_020826	ENSG00000019505	SYT13	-	synaptotagmin 13	protein-coding
185702	chr5	132007601	132008350	+	0	NA	intron (NM_001205250, intron 1 of 20)	intron (NM_001205250, intron 1 of 20)	3683	NM_001205247	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
83032	chr16	22309001	22309600	+	0	NA	intron (NM_018119, intron 5 of 20).2	intron (NM_018119, intron 5 of 20).2	11891	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
26114	chr10	13383451	13383550	+	0	NA	Intergenic	Intergenic	-35202	NM_001195602	22929		NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
126487	chr2	28396851	28397350	+	0	NA	intron (NM_005253, intron 1 of 3)	intron (NM_005253, intron 1 of 3)	-2428	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
198609	chr6	107726101	107727980	+	0	NA	intron (NM_001286408, intron 4 of 6)	L1MB8|LINE|L1	5110	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
177803	chr4	123413301	123413900	+	0	NA	Intergenic	Intergenic	14060	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
153268	chr22	24141501	24142480	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-39497	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
4548	chr1	22028671	22028830	+	0	NA	intron (NR_109762, intron 2 of 2)	AluJb|SINE|Alu	-2702	NR_110692	101928043		NR_110692	ENSG00000228397	LINC01635	-	long intergenic non-protein coding RNA 1635	ncRNA
194313	chr6	32828721	32829250	+	0	NA	exon (NM_001290043, exon 12 of 12).2	exon (NM_001290043, exon 12 of 12).2	9754	NM_001290043	6891		NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
29544	chr10	71217471	71218280	+	0	NA	intron (NR_038453, intron 1 of 1)	CpG	353	NR_038453	728978		NR_038453	ENSG00000237512	UNC5B-AS1	TP53LC05|UASR1	UNC5B antisense RNA 1	ncRNA
224408	chr9	14768671	14768830	+	0	NA	intron (NR_163242, intron 3 of 11)	intron (NR_163242, intron 3 of 11)	11681	NM_001370061	158326		NM_144966	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
228085	chr9	96412371	96412680	+	0	NA	intron (NM_153695, intron 1 of 4)	intron (NM_153695, intron 1 of 4)	5845	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
35999	chr11	2890221	2890850	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-4760	NM_001362474	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
186983	chr5	139702171	139702330	+	0	NA	Intergenic	L2a|LINE|L2	26807	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
31991	chr10	100872271	100872440	+	0	NA	Intergenic	Intergenic	-40608	NM_018121	55719		NM_018121	ENSG00000119906	SLF2	ATELS1|C10orf6|FAM178A	SMC5-SMC6 complex localization factor 2	protein-coding
28000	chr10	43141801	43142580	+	0	NA	intron (NR_135077, intron 1 of 8)	AluSg|SINE|Alu	3745	NM_018590	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
201420	chr6	146851951	146852450	+	0	NA	intron (NR_034115, intron 8 of 10)	MLT1A0|LTR|ERVL-MaLR	-48376	NR_003954	729176		NR_003954		KATNBL1P6	-	katanin regulatory subunit B1 like 1 pseudogene 6	pseudo
155502	chr22	38658421	38658930	+	0	NA	intron (NM_015373, intron 1 of 4)	AluY|SINE|Alu	2022	NM_001002880	25776		NM_015373	ENSG00000100211	CBY1	C22orf2|CBY|Chibby1|HS508I15A|PGEA1|PIGEA-14|PIGEA14|arb1	chibby 1, beta catenin antagonist	protein-coding
190884	chr6	2634101	2634800	+	0	NA	promoter-TSS (NR_149118)	promoter-TSS (NR_149118)	-50	NR_149119	105374885		NR_149118		LINC02521	-	long intergenic non-protein coding RNA 2521	ncRNA
186212	chr5	134375351	134375950	+	0	NA	intron (NM_003337, intron 2 of 5)	AluYe5|SINE|Alu	4081	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
197098	chr6	57047621	57047980	+	0	NA	intron (NM_001286274, intron 2 of 2)	intron (NM_001286274, intron 2 of 2)	1053	NM_001286276	57691		NM_020931	ENSG00000168116	KIAA1586	-	KIAA1586	protein-coding
50472	chr12	47771701	47771900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1438	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
12134	chr1	100071501	100071700	+	0	NA	intron (NM_033055, intron 8 of 11)	L1M5|LINE|L1	33505	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
76729	chr15	76192001	76192530	+	0	NA	intron (NM_152335, intron 9 of 10)	intron (NM_152335, intron 9 of 10)	-10779	NR_120360	101929439		NR_120360	ENSG00000259422	LOC101929439	-	uncharacterized LOC101929439	ncRNA
105143	chr17	82244221	82244930	+	0	NA	non-coding (NR_110578, exon 9 of 9)	non-coding (NR_110578, exon 9 of 9)	7907	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
221015	chr8	116437451	116438350	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-112841	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
183974	chr5	88690701	88691350	+	0	NA	promoter-TSS (NR_152233)	promoter-TSS (NR_152233)	16	NR_152233	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
174564	chr4	40222951	40223650	+	0	NA	intron (NM_001278360, intron 2 of 3)	Tigger1|DNA|TcMar-Tigger	26269	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
23623	chr1	230273071	230273430	+	0	NA	intron (NM_001291866, intron 14 of 15)	intron (NM_001291866, intron 14 of 15)	153082	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
162534	chr3	48615651	48615750	+	0	NA	Intergenic	AluYa5|SINE|Alu	-6054	NM_003365	7384		NM_003365	ENSG00000010256	UQCRC1	D3S3191|PKNPY|QCR1|UQCR1	ubiquinol-cytochrome c reductase core protein 1	protein-coding
29052	chr10	67847621	67847980	+	0	NA	Intergenic	L1ME4b|LINE|L1	-9612	NM_021800	56521		NM_021800	ENSG00000108176	DNAJC12	HPANBH4|JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
46804	chr11	130279251	130279550	+	0	NA	intron (NR_163264, intron 1 of 10)	AluSz6|SINE|Alu	35312	NM_001301099	29068		NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
78308	chr15	90927071	90928050	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2620	NM_001039675	55898		NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|OOHE|SMAP-1|SMAP1|UNC-45A	unc-45 myosin chaperone A	protein-coding
113216	chr19	8460851	8461400	+	0	NA	intron (NM_001297418, intron 3 of 13)	intron (NM_001297418, intron 3 of 13)	16150	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
153296	chr22	24176351	24176650	+	0	NA	intron (NM_012295, intron 35 of 36)	intron (NM_012295, intron 35 of 36)	-4987	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
16027	chr1	152189751	152190150	+	0	NA	Intergenic	Intergenic	-30722	NM_001122965	126638		NM_152364	ENSG00000215853	RPTN	-	repetin	protein-coding
161866	chr3	45880801	45881600	+	0	NA	intron (NM_001276379, intron 2 of 9)	intron (NM_001276379, intron 2 of 9)	-5304	NM_001256369	10803		NM_006641	ENSG00000173585	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	C-C motif chemokine receptor 9	protein-coding
19379	chr1	174003321	174003580	+	0	NA	intron (NM_172071, intron 1 of 19)	L2|LINE|L2	-10378	NM_001300851	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
31782	chr10	98242951	98243050	+	0	NA	intron (NM_138469, intron 9 of 9)	intron (NM_138469, intron 9 of 9)	25194	NM_032211	84171		NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
15753	chr1	151145071	151145230	+	0	NA	intron (NM_001178061, intron 1 of 19)	intron (NM_001178061, intron 1 of 19)	1481	NM_030913	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
89324	chr16	88735801	88736630	+	0	NA	exon (NM_001142864, exon 12 of 51)	exon (NM_001142864, exon 12 of 51)	5035	NR_103774	100289580		NM_207451		HSALR1	-	HSP90AB1 associated lncRNA 1	ncRNA
163657	chr3	52197521	52198980	+	0	NA	promoter-TSS (NM_000688)	promoter-TSS (NM_000688)	90	NM_000688	211		NM_000688	ENSG00000023330	ALAS1	ALAS|ALAS-H|ALAS3|ALASH|MIG4	5'-aminolevulinate synthase 1	protein-coding
52889	chr12	57207451	57207750	+	0	NA	intron (NM_002332, intron 76 of 88)	intron (NM_002332, intron 76 of 88)	-9194	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
55316	chr12	103907371	103908130	+	0	NA	intron (NR_027249, intron 3 of 15)	L2b|LINE|L2	22461	NR_027249	253724		NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
61251	chr13	50009821	50010080	+	0	NA	intron (NM_001007278, intron 3 of 3)	AluJr|SINE|Alu	-5494	NM_199464	283518		NM_173605	ENSG00000198553	KCNRG	DLTET	potassium channel regulator	protein-coding
65259	chr14	49940551	49942150	+	0	NA	Intergenic	Intergenic	-25049	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
205993	chr7	26190521	26191430	+	0	NA	3' UTR (NM_031243, exon 12 of 12)	3' UTR (NM_031243, exon 12 of 12)	9771	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
70585	chr14	102622221	102622680	+	0	NA	intron (NM_015156, intron 2 of 11)	L2a|LINE|L2	29801	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
97488	chr17	43842351	43842800	+	0	NA	Intergenic	Intergenic	-4601	NM_001168322	146894		NM_145273	ENSG00000161649	CD300LG	CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4	CD300 molecule like family member g	protein-coding
808	chr1	1555521	1556050	+	0	NA	intron (NM_014188, intron 2 of 4)	AluJr|SINE|Alu	-15161	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
78742	chr15	98854871	98855030	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	70524	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
124139	chr19	55694301	55694500	+	0	NA	intron (NM_001321263, intron 9 of 10)	intron (NM_001321263, intron 9 of 10)	17775	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
66645	chr14	63868351	63869200	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	15771	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
54599	chr12	92524201	92524900	+	0	NA	Intergenic	L1MEf|LINE|L1	57871	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
163907	chr3	52532251	52532700	+	0	NA	intron (NM_022908, intron 1 of 13)	intron (NM_022908, intron 1 of 13)	1382	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
99056	chr17	48914701	48914900	+	0	NA	intron (NM_023079, intron 3 of 6)	AluSz6|SINE|Alu	-5817	NR_135674	105371814		NR_135674	ENSG00000293025	LOC105371814	-	uncharacterized LOC105371814	ncRNA
198731	chr6	108294571	108295730	+	0	NA	promoter-TSS (NM_145315)	promoter-TSS (NM_145315)	96	NM_145315	246269		NM_145315	ENSG00000135537	AFG1L	AFG1|LACE1|c222389	AFG1 like ATPase	protein-coding
1839	chr1	6260901	6262950	+	0	NA	promoter-TSS (NM_207370)	promoter-TSS (NM_207370)	-827	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
62924	chr13	111176001	111176200	+	0	NA	intron (NM_001354057, intron 3 of 18)	THE1C|LTR|ERVL-MaLR	-10694	NM_001113513	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
77521	chr15	84699051	84699350	+	0	NA	intron (NM_001271920, intron 1 of 6)	AluSz6|SINE|Alu	16939	NM_014300	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
96078	chr17	39603971	39604630	+	0	NA	3' UTR (NM_006160, exon 2 of 2)	3' UTR (NM_006160, exon 2 of 2)	3620	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
151027	chr21	44512371	44512530	+	0	NA	intron (NR_103707, intron 6 of 6)	intron (NR_103707, intron 6 of 6)	-4765	NR_026547	114043		NM_153204		TSPEAR-AS2	C21orf90	TSPEAR antisense RNA 2	ncRNA
185887	chr5	132714671	132715050	+	0	NA	intron (NM_001300791, intron 8 of 18)	intron (NM_001300791, intron 8 of 18)	22686	NM_001300792	11127		NM_007054	ENSG00000131437	KIF3A	FLA10|KLP-20	kinesin family member 3A	protein-coding
34268	chr10	131884221	131884630	+	0	NA	Intergenic	Intergenic	-16583	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
225649	chr9	36393371	36393950	+	0	NA	intron (NM_194330, intron 1 of 11)	MLT1E1A|LTR|ERVL-MaLR	6609	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
203254	chr6	169424971	169425770	+	0	NA	Intergenic	Intergenic	-171524	NR_167745	7058		NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
39690	chr11	61732671	61732830	+	0	NA	intron (NM_006133, intron 9 of 19)	intron (NM_006133, intron 9 of 19)	-19886	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
132364	chr2	105758921	105759180	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	13987	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
40864	chr11	65088571	65088730	+	0	NA	TTS (NM_006782)	TTS (NM_006782)	460	NM_001242631	100130348		NM_001242631	ENSG00000187066	TMEM262	-	transmembrane protein 262	protein-coding
58106	chr12	124766851	124767450	+	0	NA	Intergenic	Intergenic	72521	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
176462	chr4	89306571	89307100	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	965	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
133602	chr2	121902271	121902650	+	0	NA	Intergenic	Intergenic	146809	NM_004622	7247		NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
235372	chrX	44907451	44907750	+	0	NA	intron (NM_001291416, intron 2 of 28)	AluSz|SINE|Alu	34412	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
3063	chr1	12170401	12170900	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	3659	NM_001066	7133		NM_001066	ENSG00000028137	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	TNF receptor superfamily member 1B	protein-coding
204734	chr7	5563311	5564230	+	0	NA	Intergenic	Intergenic	-29046	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
55123	chr12	98596671	98598350	+	0	NA	intron (NM_213611, intron 2 of 6)	AluSx|SINE|Alu	-2125	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
155706	chr22	39096871	39097550	+	0	NA	promoter-TSS (NM_001166002)	promoter-TSS (NM_001166002)	-14	NM_001166004	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
182489	chr5	62513121	62513380	+	0	NA	intron (NM_016338, intron 19 of 29)	SVA_D|Retroposon|SVA	-65485	NR_073584	101180901		NR_073584	ENSG00000086200	IPO11-LRRC70	-	IPO11-LRRC70 readthrough	ncRNA
206436	chr7	32862971	32863330	+	0	NA	Intergenic	Intergenic	28610	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
222930	chr8	143013951	143014350	+	0	NA	intron (NR_026913, intron 1 of 1)	intron (NR_026913, intron 1 of 1)	4240	NR_026913	100133669		NR_026913		LY6E-DT	-	LY6E divergent transcript	ncRNA
39665	chr11	61684151	61684980	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	4174	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
21647	chr1	206663871	206664580	+	0	NA	Intergenic	Intergenic	-20680	NM_032960	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
11734	chr1	91895951	91896050	+	0	NA	intron (NM_001195684, intron 2 of 17)	L2a|LINE|L2	-9849	NM_003243	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
197232	chr6	69495851	69495950	+	0	NA	Intergenic	L1HS|LINE|L1	300566	NM_001363722	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
217015	chr8	23201701	23201900	+	0	NA	intron (NM_003844, intron 4 of 9)	intron (NM_003844, intron 4 of 9)	23302	NM_003844	8797		NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
59227	chr13	23570851	23570950	+	0	NA	intron (NM_001204459, intron 1 of 7)	intron (NM_001204459, intron 1 of 7)	488	NM_148957	55504		NM_018647	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	TNF receptor superfamily member 19	protein-coding
170156	chr3	183541501	183542300	+	0	NA	intron (NM_130446, intron 1 of 6)	intron (NM_130446, intron 1 of 6)	-6835	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
133952	chr2	130574221	130574480	+	0	NA	intron (NR_027314, intron 1 of 1)	intron (NR_027314, intron 1 of 1)	3501	NR_027314	150527		NR_027313	ENSG00000290614	PRSS40A	TISP43	serine protease 40A (pseudogene)	pseudo
80923	chr16	3799721	3799980	+	0	NA	intron (NM_004380, intron 3 of 30)	intron (NM_004380, intron 3 of 30)	80270	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
8425	chr1	40478871	40479030	+	0	NA	intron (NM_001320178, intron 1 of 5)	intron (NM_001320178, intron 1 of 5)	1660	NM_001320178	339559		NM_198494	ENSG00000187815	ZFP69	ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
183127	chr5	74853051	74853500	+	0	NA	intron (NM_015566, intron 1 of 12)	intron (NM_015566, intron 1 of 12)	-12618	NR_134288	441086		NR_134288		FAM169A-AS1	TP53LC02	FAM169A antisense RNA 1	ncRNA
116268	chr19	17685871	17686250	+	0	NA	intron (NM_001080421, intron 1 of 41)	intron (NM_001080421, intron 1 of 41)	2139	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
80892	chr16	3716571	3718000	+	0	NA	intron (NM_016292, intron 1 of 17)	CpG	239	NM_001272049	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
176575	chr4	98661651	98662030	+	0	NA	intron (NR_148380, intron 2 of 2)	L2c|LINE|L2	2938	NR_148380	105377342		NR_148380		TSPAN5-DT	-	TSPAN5 divergent transcript	ncRNA
204633	chr7	5399821	5400350	+	0	NA	intron (NM_001080495, intron 2 of 29)	AluJb|SINE|Alu	23461	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
213628	chr7	139626701	139627650	+	0	NA	intron (NM_022740, intron 5 of 14)	L1MB2|LINE|L1	103490	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
32182	chr10	101585971	101586130	+	0	NA	exon (NM_001174085, exon 3 of 9)	exon (NM_001174085, exon 3 of 9)	2207	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
99744	chr17	50940071	50940430	+	0	NA	Intergenic	Intergenic	-72272	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
31586	chr10	97348771	97348930	+	0	NA	Intergenic	L2b|LINE|L2	-14121	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
123581	chr19	54459671	54459830	+	0	NA	3' UTR (NM_001375641, exon 15 of 15).2	3' UTR (NM_001375641, exon 15 of 15).2	4028	NM_198988	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
136899	chr2	189466621	189467030	+	0	NA	intron (NM_032168, intron 13 of 20)	intron (NM_032168, intron 13 of 20)	25351	NM_032168	84128		NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
138381	chr2	204022671	204023240	+	0	NA	Intergenic	LTR83|LTR|ERVL	86192	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
206897	chr7	37793751	37794250	+	0	NA	Intergenic	Intergenic	-54597	NM_016616	51314		NM_016616	ENSG00000086288	NME8	CILD6|DNAI8|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2	NME/NM23 family member 8	protein-coding
75811	chr15	69107251	69107550	+	0	NA	Intergenic	Intergenic	26550	NR_026949	283673		NM_173610	ENSG00000212766	EWSAT1	LINC00277|NCRNA00277|TMEM84	Ewing sarcoma associated transcript 1	ncRNA
71819	chr15	22155151	22155800	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	5455	NR_135695	102724760		NR_135695		LOC102724760	-	immunoglobulin heavy variable 1/OR15-1 pseudogene	pseudo
93959	chr17	21458571	21459130	+	0	NA	Intergenic	Intergenic	82493	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
69018	chr14	91509321	91511050	+	0	NA	non-coding (NR_169192, exon 1 of 16)	non-coding (NR_169192, exon 1 of 16)	125	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
191882	chr6	15325801	15326430	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	77260	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
88411	chr16	84656601	84657430	+	0	NA	exon (NM_001303451, exon 3 of 4)	exon (NM_001303451, exon 3 of 4)	8504	NM_024731	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
233059	chr9	137074471	137074930	+	0	NA	Intergenic	L2b|LINE|L2	-2817	NM_207309	91373		NM_207309	ENSG00000197355	UAP1L1	-	UDP-N-acetylglucosamine pyrophosphorylase 1 like 1	protein-coding
103057	chr17	77188871	77189530	+	0	NA	intron (NM_001144001, intron 1 of 14)	LTR54|LTR|ERV1	3987	NM_001144001	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
143275	chr20	25223201	25223400	+	0	NA	intron (NM_001322380, intron 10 of 12)	intron (NM_001322380, intron 10 of 12)	-24785	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
124248	chr19	57499401	57500650	+	0	NA	promoter-TSS (NM_001304335)	promoter-TSS (NM_001304335)	87	NM_001304337	374928		NM_198542	ENSG00000152439	ZNF773	ZNF419B	zinc finger protein 773	protein-coding
19520	chr1	175757551	175757650	+	0	NA	Intergenic	Intergenic	-14005	NM_003285	7143		NM_003285	ENSG00000116147	TNR	NEDSTO|TN-R	tenascin R	protein-coding
55788	chr12	108627901	108630460	+	0	NA	intron (NM_003006, intron 1 of 1)	intron (NM_003006, intron 1 of 1)	2901	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
198812	chr6	109036171	109036930	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	-26995	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
84023	chr16	29482271	29482750	+	0	NA	Intergenic	Intergenic	-14932	NR_002556	388242		NR_002556	ENSG00000290678	LOC388242	-	SAGA complex associated factor 29 pseudogene	pseudo
54463	chr12	91983051	91983150	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	158613	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
131311	chr2	96119671	96119830	+	0	NA	Intergenic	Intergenic	-3179	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
75118	chr15	64511371	64511730	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	50972	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
48847	chr12	12374801	12375580	+	0	NA	intron (NM_058169, intron 2 of 3)	AluSx1|SINE|Alu	18112	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
218539	chr8	53881721	53882580	+	0	NA	intron (NR_104579, intron 1 of 3)	CpG-27258	1278	NR_104578	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
78546	chr15	92976401	92976800	+	0	NA	intron (NM_001271, intron 20 of 38)	FLAM_C|SINE|Alu	72201	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
115921	chr19	16616451	16617330	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	11314	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
237831	chrX	130059951	130061430	+	0	NA	Intergenic	CpG	49807	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
47441	chr12	3492121	3492580	+	0	NA	intron (NM_019854, intron 1 of 9)	CpG	469	NR_126055	100129223		NR_126055	ENSG00000287243	THCAT155	-	thyroid cancer-associated transcript 155	ncRNA
19671	chr1	180863201	180863480	+	0	NA	intron (NM_004736, intron 11 of 14)	intron (NM_004736, intron 11 of 14)	-49557	NM_020950	57710		NM_020950	ENSG00000135835	KIAA1614	-	KIAA1614	protein-coding
121961	chr19	48477371	48478700	+	0	NA	intron (NM_017457, intron 8 of 11)	intron (NM_017457, intron 8 of 11)	8666	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
74559	chr15	60528301	60529130	+	0	NA	non-coding (NR_120340, exon 4 of 5)	non-coding (NR_120340, exon 4 of 5)	49537	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
51616	chr12	52884401	52885100	+	0	NA	Intergenic	LTR24|LTR|ERV1	14234	NR_162090	113218482		NR_162090		MIR9898	-	microRNA 9898	ncRNA
237516	chrX	120093021	120093100	+	0	NA	intron (NR_131238, intron 1 of 4)	intron (NR_131238, intron 1 of 4)	-15370	NM_032498	84528		NM_032498	ENSG00000131721	RHOXF2	CT107|PEPP-2|PEPP2|THG1	Rhox homeobox family member 2	protein-coding
142946	chr20	18793371	18795050	+	0	NA	promoter-TSS (NR_026884)	promoter-TSS (NR_026884)	161	NR_026885	100270804		NR_026885	ENSG00000273148	LCDR	LINC00653	lysosome cell death regulator	ncRNA
234569	chrX	19749021	19749280	+	0	NA	intron (NM_001353892, intron 2 of 17)	L1MB4|LINE|L1	50623	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
104567	chr17	81349821	81350280	+	0	NA	Intergenic	Intergenic	-19376	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
163422	chr3	50565571	50565880	+	0	NA	5' UTR (NM_001171741, exon 2 of 5)	5' UTR (NM_001171741, exon 2 of 5)	2022	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
192178	chr6	17667601	17668000	+	0	NA	intron (NM_001278209, intron 8 of 22)	intron (NM_001278209, intron 8 of 22)	-38330	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
135973	chr2	172099921	172100800	+	0	NA	3' UTR (NM_004405, exon 3 of 3)	3' UTR (NM_004405, exon 3 of 3)	2540	NM_004405	1746		NM_004405	ENSG00000115844	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
87817	chr16	75579401	75579600	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	13121	NM_007285	11345		NM_007285	ENSG00000034713	GABARAPL2	ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2	GABA type A receptor associated protein like 2	protein-coding
125624	chr2	19352771	19352930	+	0	NA	intron (NM_145260, intron 2 of 2)	MER3|DNA|hAT-Charlie	4421	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
196625	chr6	44266601	44266800	+	0	NA	Intergenic	Intergenic	-1149	NM_004556	4794		NM_004556	ENSG00000146232	NFKBIE	IKBE	NFKB inhibitor epsilon	protein-coding
111664	chr19	4249871	4250030	+	0	NA	intron (NM_018074, intron 2 of 7)	AluSx|SINE|Alu	2870	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
24632	chr1	246642301	246642950	+	0	NA	intron (NM_001139459, intron 8 of 8)	intron (NM_001139459, intron 8 of 8)	76169	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
636	chr1	1338701	1339950	+	0	NA	TTS (NR_106866)	TTS (NR_106866)	383	NR_106866	102466740		NR_106866	ENSG00000284372	MIR6808	hsa-mir-6808	microRNA 6808	ncRNA
134186	chr2	134319701	134320250	+	0	NA	intron (NM_001371457, intron 5 of 16)	intron (NM_001371457, intron 5 of 16)	65903	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
151138	chr21	44903271	44903630	+	0	NA	exon (NM_001303238, exon 5 of 16)	exon (NM_001303238, exon 5 of 16)	17449	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
231000	chr9	129501771	129501930	+	0	NA	intron (NR_038955, intron 2 of 4)	L2c|LINE|L2	13190	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
102263	chr17	75281871	75282030	+	0	NA	intron (NM_001126121, intron 5 of 7)	intron (NM_001126121, intron 5 of 7)	7483	NM_001126121	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
210117	chr7	98113901	98114150	+	0	NA	intron (NM_014916, intron 1 of 13)	intron (NM_014916, intron 1 of 13)	7163	NM_014916	22853		NM_014916	ENSG00000164715	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK	lemur tyrosine kinase 2	protein-coding
234680	chrX	20264721	20266100	+	0	NA	intron (NM_004586, intron 1 of 21)	intron (NM_004586, intron 1 of 21)	1499	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
233353	chr9	137456701	137456900	+	0	NA	intron (NM_001130969, intron 3 of 15)	intron (NM_001130969, intron 3 of 15)	2534	NM_001130971	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228553	chr9	101536871	101537230	+	0	NA	intron (NM_019592, intron 2 of 19)	intron (NM_019592, intron 2 of 19)	3197	NM_019592	56254		NM_019592	ENSG00000155827	RNF20	BRE1|BRE1A|hBRE1	ring finger protein 20	protein-coding
36407	chr11	4086571	4087330	+	0	NA	intron (NM_001277961, intron 11 of 11)	intron (NM_001277961, intron 11 of 11)	-7735	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
52414	chr12	55768151	55768550	+	0	NA	intron (NM_033082, intron 9 of 10)	AluSx1|SINE|Alu	25228	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
160250	chr3	24094851	24095030	+	0	NA	Intergenic	L1PA2|LINE|L1	8307	NR_026834	152024		NR_026834	ENSG00000224074	LINC00691	-	long intergenic non-protein coding RNA 691	ncRNA
104710	chr17	81548821	81549130	+	0	NA	intron (NR_033338, intron 4 of 8)	AluY|SINE|Alu	3378	NR_033338	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
238211	chrX	139738921	139739490	+	0	NA	intron (NM_173694, intron 27 of 29)	intron (NM_173694, intron 27 of 29)	-30983	NM_001099855	4168		NM_005369	ENSG00000101977	MCF2	ARHGEF21|DBL	MCF.2 cell line derived transforming sequence	protein-coding
41202	chr11	65651421	65651800	+	0	NA	TTS (NM_006747)	TTS (NM_006747)	2418	NR_039709	100616284		NR_039709	ENSG00000265874	MIR4489	mir-4489	microRNA 4489	ncRNA
167082	chr3	127108801	127109000	+	0	NA	Intergenic	(TCTGG)n|Simple_repeat|Simple_repeat	-84231	NM_001007534	285311		NM_001007534	ENSG00000214324	PRR23E	C3orf56	PRR23 family member E	protein-coding
180618	chr5	16615351	16615450	+	0	NA	promoter-TSS (NR_109946)	promoter-TSS (NR_109946)	-526	NR_109946	101929524		NR_109946	ENSG00000246214	RETREG1-AS1	-	RETREG1 antisense RNA 1	ncRNA
195026	chr6	35473151	35473450	+	0	NA	TTS (NM_003214)	TTS (NM_003214)	2792	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
150947	chr21	44297421	44298700	+	0	NA	3' UTR (NM_000383, exon 14 of 14)	3' UTR (NM_000383, exon 14 of 14)	-1993	NM_002626	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
145408	chr20	41632851	41633150	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-14623	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
67694	chr14	73241021	73241280	+	0	NA	intron (NM_173462, intron 2 of 25)	intron (NM_173462, intron 2 of 25)	1377	NM_001365907	89932		NM_173462	ENSG00000100767	PAPLN	PPN	papilin, proteoglycan like sulfated glycoprotein	protein-coding
112611	chr19	6742401	6742900	+	0	NA	intron (NR_110231, intron 3 of 14)	AluJr|SINE|Alu	2970	NM_001288963	9322		NM_004240	ENSG00000125733	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
152691	chr22	21625701	21626200	+	0	NA	Intergenic	AluJb|SINE|Alu	4072	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
183292	chr5	76547221	76549280	+	0	NA	intron (NM_001285460, intron 1 of 34)	MIRc|SINE|MIR	841	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
121855	chr19	48249271	48250230	+	0	NA	promoter-TSS (NM_001184901)	promoter-TSS (NM_001184901)	78	NM_001365950	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
148483	chr20	64053021	64053480	+	0	NA	Intergenic	Intergenic	-3611	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
87034	chr16	68278551	68278850	+	0	NA	intron (NM_001076785, intron 4 of 11)	SVA_C|Retroposon|SVA	14174	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
180485	chr5	14108501	14108780	+	0	NA	Intergenic	Intergenic	-34702	NM_007118	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
94636	chr17	30095551	30096080	+	0	NA	intron (NM_198529, intron 22 of 22)	intron (NM_198529, intron 22 of 22)	-20992	NM_001261467	84081		NM_032141	ENSG00000126653	NSRP1	CCDC55|HSPC095|NEDSSBA|NSrp70	nuclear speckle splicing regulatory protein 1	protein-coding
142690	chr20	8017921	8018600	+	0	NA	intron (NM_021156, intron 1 of 7)	intron (NM_021156, intron 1 of 7)	1501	NM_021156	56255		NM_021156	ENSG00000125827	TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin related transmembrane protein 4	protein-coding
231281	chr9	130024451	130024550	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	18689	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
156216	chr22	40334151	40334250	+	0	NA	3' UTR (NM_001162501, exon 23 of 23)	3' UTR (NM_001162501, exon 23 of 23)	-12300	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
116296	chr19	17762501	17762980	+	0	NA	intron (NM_001384386, intron 4 of 28)	intron (NM_001384386, intron 4 of 28)	8531	NR_169258	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
141413	chr2	240925971	240926130	+	0	NA	intron (NM_001351305, intron 5 of 31)	intron (NM_001351305, intron 5 of 31)	19714	NM_001351305	728763		NM_001351305	ENSG00000226321	CROCC2	-	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding
185506	chr5	131321021	131321480	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1ME4b|LINE|L1	57197	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
111763	chr19	4388851	4389150	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	11547	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
122914	chr19	50637971	50638330	+	0	NA	promoter-TSS (NM_032298)	promoter-TSS (NM_032298)	-105	NM_032298	84258		NM_032298	ENSG00000213023	SYT3	SytIII	synaptotagmin 3	protein-coding
12840	chr1	110059671	110060830	+	0	NA	3' UTR (NM_006492, exon 4 of 4)	3' UTR (NM_006492, exon 4 of 4)	10422	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
125723	chr2	20635801	20636150	+	0	NA	intron (NM_022460, intron 4 of 6)	intron (NM_022460, intron 4 of 6)	15123	NM_022460	64342		NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
173830	chr4	19083251	19083430	+	0	NA	Intergenic	L1HS|LINE|L1	-1061465	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
54070	chr12	76036971	76037700	+	0	NA	3' UTR (NM_004537, exon 15 of 15)	3' UTR (NM_004537, exon 15 of 15)	-5559	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
96735	chr17	41680501	41681000	+	0	NA	Intergenic	Intergenic	-8135	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
49973	chr12	42097721	42098480	+	0	NA	intron (NM_173601, intron 5 of 7)	intron (NM_173601, intron 5 of 7)	46774	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
61537	chr13	60335671	60335830	+	0	NA	Intergenic	Intergenic	-60707	NM_001146071	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
193631	chr6	30788851	30789150	+	0	NA	intron (NR_138037, intron 2 of 3)	MER63D|DNA|hAT-Blackjack	22175	NR_138037	105375013		NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20	ncRNA
192062	chr6	16603801	16604400	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	156084	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
22741	chr1	224348171	224348530	+	0	NA	Intergenic	Intergenic	-8529	NR_102347	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
71443	chr14	105683171	105683330	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-10443	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
188973	chr5	163489021	163489380	+	0	NA	intron (NM_012484, intron 16 of 17)	MER1B|DNA|hAT-Charlie	4858	NR_109892	101927813		NR_109892		HMMR-AS1	-	HMMR antisense RNA 1	ncRNA
157489	chr22	45316421	45316880	+	0	NA	intron (NM_001349915, intron 1 of 7)	intron (NM_001349915, intron 1 of 7)	-1793	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
226075	chr9	62443671	62443850	+	0	NA	Intergenic	TAR1|Satellite|telo	-8730	NR_046203	643648		NR_046203		LINC01189	-	long intergenic non-protein coding RNA 1189	ncRNA
20854	chr1	201894701	201895300	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	6102	NM_198149	149345		NM_198149	ENSG00000198892	SHISA4	C1orf40|TMEM58	shisa family member 4	protein-coding
133420	chr2	118881571	118882030	+	0	NA	Intergenic	Intergenic	-34152	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
90163	chr17	221371	221830	+	0	NA	intron (NM_006987, intron 7 of 9).2	intron (NM_006987, intron 7 of 9).2	-34349	NR_104420	100506371		NR_104420		LINC02091	-	long intergenic non-protein coding RNA 2091	ncRNA
140975	chr2	237966171	237967900	+	0	NA	promoter-TSS (NM_001278308)	promoter-TSS (NM_001278308)	21	NM_080678	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
19869	chr1	183477951	183479030	+	0	NA	intron (NM_001174061, intron 1 of 21)	AmnSINE1|SINE|5S-Deu-L2	5991	NM_001375585	9887		NM_014837	ENSG00000116698	SMG7	C1orf16|EST1C|SGA56M	SMG7 nonsense mediated mRNA decay factor	protein-coding
181272	chr5	39267771	39268450	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	2539	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
216407	chr8	18209651	18210950	+	0	NA	intron (NM_000662, intron 1 of 2)	intron (NM_000662, intron 1 of 2)	191	NM_001160175	9		NM_000662	ENSG00000171428	NAT1	AAC1|MNAT|NAT-1|NATI	N-acetyltransferase 1	protein-coding
86782	chr16	67781401	67782030	+	0	NA	intron (NM_001320238, intron 1 of 12)	intron (NM_001320238, intron 1 of 12)	24845	NM_020850	57610		NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
137201	chr2	191170871	191171380	+	0	NA	Intergenic	Intergenic	-19529	NM_001243835	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
159687	chr3	15535771	15536230	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-14294	NM_080539	8292		NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
168757	chr3	151206401	151207500	+	0	NA	intron (NM_053002, intron 14 of 42)	intron (NM_053002, intron 14 of 42)	-3734	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
102686	chr17	76127171	76127530	+	0	NA	Intergenic	HAL1|LINE|L1	-13206	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
178359	chr4	146177751	146177850	+	0	NA	intron (NM_007080, intron 1 of 3)	MER20|DNA|hAT-Charlie	2082	NM_007080	11157		NM_007080	ENSG00000164167	LSM6	YDR378C	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
38483	chr11	45846831	45848430	+	0	NA	exon (NM_021117, exon 1 of 12)	exon (NM_021117, exon 1 of 12)	155	NM_021117	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
200703	chr6	137400021	137400380	+	0	NA	Intergenic	Intergenic	94194	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
202180	chr6	155974101	155974300	+	0	NA	Intergenic	Intergenic	27403	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
84393	chr16	30323521	30324050	+	0	NA	intron (NR_002453, intron 1 of 12)	intron (NR_002453, intron 1 of 12)	11589	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
53649	chr12	68317071	68317300	+	0	NA	intron (NM_001368282, intron 6 of 13)	intron (NM_001368282, intron 6 of 13)	15177	NM_001368282	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
37915	chr11	34154771	34155100	+	0	NA	intron (NM_145804, intron 14 of 16)	intron (NM_145804, intron 14 of 16)	49306	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
191750	chr6	13813451	13814900	+	0	NA	exon (NM_001031713, exon 1 of 9)	exon (NM_001031713, exon 1 of 9)	385	NM_001031713	63933		NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
50970	chr12	49553221	49554150	+	0	NA	intron (NM_001314030, intron 10 of 14)	Kanga1c|DNA|TcMar-Tc2	12754	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
153029	chr22	23241871	23242030	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-20817	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
2950	chr1	11905221	11906250	+	0	NA	Intergenic	Intergenic	-2419	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
58288	chr12	130748021	130748340	+	0	NA	Intergenic	Intergenic	-31875	NM_001351233	23504		NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
200954	chr6	139182751	139182850	+	0	NA	Intergenic	Intergenic	47720	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
232716	chr9	136586921	136587400	+	0	NA	Intergenic	Intergenic	30021	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
107339	chr18	45775201	45775750	+	0	NA	Intergenic	CpG	48522	NM_001146037	6563		NM_015865	ENSG00000141469	SLC14A1	HUT11|HUT11A|HsT1341|JK|Jk(a)|Jk(b)|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 member 1 (Kidd blood group)	protein-coding
159719	chr3	15744301	15744500	+	0	NA	intron (NM_001349280, intron 3 of 26)	AluSq2|SINE|Alu	12147	NM_001195099	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
24415	chr1	243415901	243416500	+	0	NA	intron (NM_001350251, intron 17 of 20).2	intron (NM_001350251, intron 17 of 20).2	70024	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
237337	chrX	118523671	118525130	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	28491	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
119799	chr19	41330531	41331850	+	0	NA	exon (NM_000660, exon 7 of 7)	exon (NM_000660, exon 7 of 7)	20713	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
22978	chr1	226081621	226082030	+	0	NA	Intergenic	AluJo|SINE|Alu	-1750	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
229428	chr9	121358071	121358230	+	0	NA	intron (NM_001270526, intron 1 of 6)	FLAM_C|SINE|Alu	12100	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
169041	chr3	153058151	153058450	+	0	NA	Intergenic	Intergenic	-103926	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
161909	chr3	45981451	45981550	+	0	NA	intron (NM_024513, intron 3 of 17)	intron (NM_024513, intron 3 of 17)	14324	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
86991	chr16	68228271	68228730	+	0	NA	TTS (NM_024939)	TTS (NM_024939)	4999	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
6723	chr1	30180021	30180280	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-142538	NR_110790	101929406		NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
200604	chr6	136749201	136749600	+	0	NA	intron (NM_005923, intron 1 of 29)	intron (NM_005923, intron 1 of 29)	-34647	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
85170	chr16	46789371	46790580	+	0	NA	Intergenic	CpG	-26729	NM_001308301	91807		NM_182493	ENSG00000140795	MYLK3	MLCK|MLCK2|caMLCK	myosin light chain kinase 3	protein-coding
109975	chr19	1398701	1399180	+	0	NA	exon (NM_138924, exon 5 of 5)	exon (NM_138924, exon 5 of 5)	2602	NM_138924	2593		NM_000156	ENSG00000130005	GAMT	CCDS2|HEL-S-20|PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
58939	chr13	19770771	19770930	+	0	NA	intron (NM_001354909, intron 2 of 8)	AluSz|SINE|Alu	12095	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
7067	chr1	32012321	32012580	+	0	NA	Intergenic	AluSx|SINE|Alu	-1418	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
4684	chr1	22885051	22885550	+	0	NA	intron (NM_017449, intron 6 of 15)	intron (NM_017449, intron 6 of 15)	-22074	NR_036214	100422914		NR_036214	ENSG00000264014	MIR4253	-	microRNA 4253	ncRNA
137080	chr2	190916701	190917430	+	0	NA	intron (NM_014905, intron 7 of 17)	Tigger1|DNA|TcMar-Tigger	36244	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
195277	chr6	36492601	36493200	+	0	NA	TTS (NM_001305102)	TTS (NM_001305102)	49900	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
230561	chr9	128455551	128457280	+	0	NA	promoter-TSS (NM_153440)	promoter-TSS (NM_153440)	15	NM_153440	4957		NM_002540	ENSG00000136811	ODF2	CT134|ODF2/1|ODF2/2|ODF84	outer dense fiber of sperm tails 2	protein-coding
125170	chr2	10048401	10049400	+	0	NA	intron (NM_001177718, intron 3 of 3)	intron (NM_001177718, intron 3 of 3)	4655	NM_001177718	8462		NM_003597	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	KLF transcription factor 11	protein-coding
130252	chr2	84851101	84851550	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	29759	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
138506	chr2	207165701	207167780	+	0	NA	promoter-TSS (NM_003709)	promoter-TSS (NM_003709)	116	NM_001270942	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
123306	chr19	53571171	53572200	+	0	NA	exon (NM_001253801, exon 4 of 5)	exon (NM_001253801, exon 4 of 5)	16378	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
225676	chr9	36474021	36474480	+	0	NA	Intergenic	AluY|SINE|Alu	-73052	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
161659	chr3	43328351	43328450	+	0	NA	intron (NM_017719, intron 3 of 6)	FAM|SINE|Alu	23562	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
153247	chr22	24035821	24036080	+	0	NA	intron (NM_012295, intron 2 of 36)	intron (NM_012295, intron 2 of 36)	24580	NM_001199281	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
88150	chr16	81634821	81635080	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	23602	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
37727	chr11	31378701	31378900	+	0	NA	intron (NM_181706, intron 2 of 4)	intron (NM_181706, intron 2 of 4)	8940	NM_181706	120526		NM_181706	ENSG00000170946	DNAJC24	DPH4|JJJ3|ZCSL3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding
138887	chr2	217755321	217755780	+	0	NA	intron (NR_026597, intron 1 of 12)	intron (NR_026597, intron 1 of 12)	1043	NR_026597	729582		NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
206391	chr7	30756451	30756550	+	0	NA	3' UTR (NM_006774, exon 3 of 3)	3' UTR (NM_006774, exon 3 of 3)	4365	NR_037598	100526825		NR_037598	ENSG00000254959	INMT-MINDY4	INMT-FAM188B	INMT-MINDY4 readthrough (NMD candidate)	ncRNA
208889	chr7	73840901	73841280	+	0	NA	exon (NM_152559, exon 3 of 6)	exon (NM_152559, exon 3 of 6)	1426	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
107033	chr18	32103901	32104500	+	0	NA	intron (NM_198128, intron 1 of 4)	AluSz|SINE|Alu	11594	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
163950	chr3	52890951	52891650	+	0	NA	intron (NM_001198974, intron 1 of 9)	MIRb|SINE|MIR	6248	NM_198563	375346		NM_198563	ENSG00000213533	STIMATE	TMEM110	STIM activating enhancer	protein-coding
193709	chr6	31160771	31162130	+	0	NA	exon (NM_007109, exon 3 of 4)	exon (NM_007109, exon 3 of 4)	2861	NM_001318908	6941		NM_007109	ENSG00000137310	TCF19	SC1|TCF-19	transcription factor 19	protein-coding
141295	chr2	240385601	240385800	+	0	NA	Intergenic	Intergenic	-49963	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
64542	chr14	24464451	24464850	+	0	NA	intron (NR_110032, intron 2 of 2)	intron (NR_110032, intron 2 of 2)	21697	NR_110032	101927045		NR_110032		LOC101927045	-	uncharacterized LOC101927045	ncRNA
180992	chr5	35812951	35813250	+	0	NA	intron (NM_024867, intron 36 of 36)	intron (NM_024867, intron 36 of 36)	-43791	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
62171	chr13	97340151	97340630	+	0	NA	intron (NM_001382653, intron 5 of 8)	intron (NM_001382653, intron 5 of 8)	-93779	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
44191	chr11	96265271	96265630	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-75988	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
33709	chr10	121597251	121597550	+	0	NA	promoter-TSS (NM_001144915)	promoter-TSS (NM_001144915)	-755	NM_001144915	2263		NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
153323	chr22	24272151	24272450	+	0	NA	intron (NM_001254732, intron 1 of 14)	AluSx|SINE|Alu	1469	NM_001254732	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
42588	chr11	72012971	72013330	+	0	NA	exon (NM_006185, exon 15 of 27)	exon (NM_006185, exon 15 of 27)	-1141	NR_104178	100128494		NR_104178	ENSG00000251143	LOC100128494	-	uncharacterized LOC100128494	ncRNA
145064	chr20	38471321	38471650	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-1358	NM_020336	57148		NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta	Ral GTPase activating protein non-catalytic subunit beta	protein-coding
131817	chr2	98622371	98622930	+	0	NA	3' UTR (NM_012214, exon 16 of 16)	3' UTR (NM_012214, exon 16 of 16)	14061	NM_001330353	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
201819	chr6	150021101	150021300	+	0	NA	intron (NM_130900, intron 2 of 4)	intron (NM_130900, intron 2 of 4)	4332	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
42312	chr11	68467401	68467800	+	0	NA	intron (NM_001352362, intron 2 of 24)	intron (NM_001352362, intron 2 of 24)	6848	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
30294	chr10	75226601	75227450	+	0	NA	intron (NM_003375, intron 9 of 10)	MER21B|LTR|ERVL	8932	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
163600	chr3	51984401	51984600	+	0	NA	intron (NM_001198898, intron 2 of 13)	intron (NM_001198898, intron 2 of 13)	965	NM_000666	95		NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
62878	chr13	110656671	110656830	+	0	NA	intron (NM_001352252, intron 10 of 15)	AluY|SINE|Alu	41122	NM_001242881	55739		NM_018210	ENSG00000213995	NAXD	CARKD|LP3298|PEBEL2	NAD(P)HX dehydratase	protein-coding
3840	chr1	16909921	16910250	+	0	NA	Intergenic	L1MEc|LINE|L1	-11846	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
44898	chr11	114805501	114805700	+	0	NA	Intergenic	L1PA4|LINE|L1	127073	NM_182495	120406		NM_182495	ENSG00000204361	NXPE2	FAM55B	neurexophilin and PC-esterase domain family member 2	protein-coding
98681	chr17	47864721	47864980	+	0	NA	Intergenic	Intergenic	-9153	NM_199262	80320		NM_199262	ENSG00000189120	SP6	AI1K|EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
89102	chr16	88488621	88489080	+	0	NA	intron (NM_153813, intron 2 of 9)	intron (NM_153813, intron 2 of 9)	19932	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
189519	chr5	173615521	173617100	+	0	NA	exon (NM_138369, exon 1 of 4)	exon (NM_138369, exon 1 of 4)	340	NR_164700	91272		NM_138369	ENSG00000145919	BOD1	FAM44B	biorientation of chromosomes in cell division 1	protein-coding
64054	chr14	22542671	22543030	+	0	NA	Intergenic	Intergenic	14212	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
29583	chr10	71724951	71725330	+	0	NA	intron (NM_001171930, intron 28 of 30)	intron (NM_001171930, intron 28 of 30)	-5362	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
232133	chr9	134022371	134022530	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	-3026	NR_149319	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
179125	chr4	168943071	168943230	+	0	NA	Intergenic	L1M2c|LINE|L1	67105	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
185381	chr5	127875571	127875880	+	0	NA	intron (NM_001317938, intron 6 of 6)	intron (NM_001317938, intron 6 of 6)	172334	NM_001317938	728586		NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
114488	chr19	12755051	12755550	+	0	NA	intron (NM_017682, intron 5 of 9)	intron (NM_017682, intron 5 of 9)	3509	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
11472	chr1	90046001	90046200	+	0	NA	Intergenic	Intergenic	50990	NM_001320185	284695		NM_181781	ENSG00000162664	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
118005	chr19	34118971	34119330	+	0	NA	Intergenic	Intergenic	-53354	NR_169265	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
187691	chr5	143345821	143346080	+	0	NA	intron (NR_157096, intron 1 of 7)	MER6|DNA|TcMar-Tigger	57333	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
8477	chr1	40803531	40805130	+	0	NA	intron (NM_172163, intron 1 of 12)	MIR3|SINE|MIR	20543	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
128477	chr2	57908851	57909150	+	0	NA	intron (NM_001288837, intron 1 of 15)	MER57F|LTR|ERV1	1349	NM_001288837	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
178053	chr4	139813551	139813650	+	0	NA	intron (NM_018717, intron 2 of 4)	HAL1|LINE|L1	147781	NM_001204368	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
142979	chr20	20020621	20021330	+	0	NA	intron (NM_181527, intron 1 of 5)	intron (NM_181527, intron 1 of 5)	3180	NM_181527	51126		NM_016100	ENSG00000173418	NAA20	MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein-coding
174913	chr4	49105471	49106250	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	119218	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
43547	chr11	82927371	82928000	+	0	NA	intron (NM_145018, intron 3 of 5)	intron (NM_145018, intron 3 of 5)	-25945	NM_001319214	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
73846	chr15	49783951	49784130	+	0	NA	Intergenic	L1PA2|LINE|L1	162992	NM_020234	56986		NM_020234	ENSG00000104047	DTWD1	MDS009	DTW domain containing 1	protein-coding
60954	chr13	46555601	46556130	+	0	NA	intron (NM_015116, intron 1 of 18)	intron (NM_015116, intron 1 of 18)	2695	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
174282	chr4	38318501	38319400	+	0	NA	Intergenic	Intergenic	-47964	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
114615	chr19	12969601	12970000	+	0	NA	exon (NM_152654, exon 1 of 2)	exon (NM_152654, exon 1 of 2)	182	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
154695	chr22	36387401	36389350	+	0	NA	promoter-TSS (NM_002473)	promoter-TSS (NM_002473)	-408	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
238205	chrX	137316801	137317200	+	0	NA	Intergenic	MIR|SINE|MIR	-249127	NM_003413	7547		NM_003413	ENSG00000156925	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
172903	chr4	3486351	3487080	+	0	NA	intron (NM_001256896, intron 2 of 3)	intron (NM_001256896, intron 2 of 3)	2171	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
155680	chr22	39045171	39045330	+	0	NA	TTS (NM_001006666)	TTS (NM_001006666)	4386	NM_001006666	200316		NM_145298	ENSG00000128394	APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	apolipoprotein B mRNA editing enzyme catalytic subunit 3F	protein-coding
21852	chr1	207414621	207414880	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	-39578	NM_001877	1380		NM_001877	ENSG00000117322	CR2	C3DR|CD21|CR|CVID7|SLEB9	complement C3d receptor 2	protein-coding
66728	chr14	64467201	64467880	+	0	NA	intron (NM_004857, intron 1 of 1)	intron (NM_004857, intron 1 of 1)	2041	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
64445	chr14	24223451	24223830	+	0	NA	intron (NR_137631, intron 1 of 6)	AluJr|SINE|Alu	-7570	NM_001199821	145553		NM_138476	ENSG00000213920	MDP1	FN6PASE|MDP-1	magnesium dependent phosphatase 1	protein-coding
147391	chr20	58688501	58688700	+	0	NA	promoter-TSS (NM_001204873)	promoter-TSS (NM_001204873)	-531	NM_001204873	79716		NM_024663	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase like 1	protein-coding
89598	chr16	89288001	89288500	+	0	NA	intron (NR_045839, intron 9 of 9)	intron (NR_045839, intron 9 of 9)	-7878	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
112605	chr19	6735571	6736800	+	0	NA	TTS (NR_106849)	TTS (NR_106849)	593	NR_106849	102465474		NR_106849	ENSG00000283950	MIR6791	hsa-mir-6791	microRNA 6791	ncRNA
68309	chr14	77319971	77320500	+	0	NA	promoter-TSS (NM_001312660)	promoter-TSS (NM_001312660)	648	NM_013382	29954		NM_013382	ENSG00000009830	POMT2	LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2	protein O-mannosyltransferase 2	protein-coding
111814	chr19	4475471	4476100	+	0	NA	intron (NM_032631, intron 3 of 15)	MER20|DNA|hAT-Charlie	1831	NM_001348169	84717		NM_032631	ENSG00000167674	HDGFL2	HDGF-2|HDGF2|HDGFRP2|HRP-2|HRP2	HDGF like 2	protein-coding
151894	chr22	18897001	18897200	+	0	NA	Intergenic	L1PA16|LINE|L1	-2669	NR_136571	100996432		NR_136571		FAM230F	LINC01663	family with sequence similarity 230 member F	ncRNA
155569	chr22	38735311	38736400	+	0	NA	3' UTR (NM_015374, exon 18 of 18)	3' UTR (NM_015374, exon 18 of 18)	19611	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
33651	chr10	119724451	119724730	+	0	NA	Intergenic	Intergenic	-1457	NM_001243195	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
172653	chr4	2602971	2603330	+	0	NA	intron (NM_001366318, intron 2 of 20)	AluY|SINE|Alu	-22282	NM_003704	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
185835	chr5	132465091	132465550	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	25453	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
117310	chr19	19501921	19502530	+	0	NA	intron (NM_001384516, intron 11 of 12)	intron (NM_001384516, intron 11 of 12)	13323	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
112955	chr19	7789501	7790200	+	0	NA	non-coding (NR_002931, exon 7 of 7)	non-coding (NR_002931, exon 7 of 7)	2366	NR_002931	440508		NR_002931		CLEC4GP1	-	C-type lectin domain family 4 member G pseudogene 1	pseudo
157390	chr22	44734521	44735030	+	0	NA	intron (NM_001017530, intron 6 of 7)	intron (NM_001017530, intron 6 of 7)	-17783	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
189752	chr5	176614151	176614250	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4044	NM_052899	114787		NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
120933	chr19	45666971	45668460	+	0	NA	promoter-TSS (NM_001308418)	promoter-TSS (NM_001308418)	-506	NM_001308418	2696		NM_000164	ENSG00000010310	GIPR	PGQTL2	gastric inhibitory polypeptide receptor	protein-coding
8411	chr1	40413401	40415000	+	0	NA	exon (NM_001198979, exon 6 of 10)	exon (NM_001198979, exon 6 of 10)	17400	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
118884	chr19	38679421	38680230	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	32176	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
50603	chr12	48671351	48672000	+	0	NA	intron (NM_017822, intron 5 of 9)	Tigger3b|DNA|TcMar-Tigger	-4082	NR_002951	677794		NR_002951	ENSG00000207313	SNORA2B	ACA2b	small nucleolar RNA, H/ACA box 2B	snoRNA
45225	chr11	117932001	117932880	+	0	NA	Intergenic	Intergenic	-2987	NM_001206790	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
168328	chr3	141740401	141740850	+	0	NA	intron (NM_001201370, intron 1 of 1)	intron (NM_001201370, intron 1 of 1)	2327	NM_014245	9616		NM_014245	ENSG00000114125	RNF7	CKBBP1|ROC2|SAG|rbx2	ring finger protein 7	protein-coding
145681	chr20	44992451	44992830	+	0	NA	intron (NM_006282, intron 5 of 10)	AluJr4|SINE|Alu	26128	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
11575	chr1	91532371	91532900	+	0	NA	Intergenic	Intergenic	31527	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
91856	chr17	7223701	7224450	+	0	NA	promoter-TSS (NR_029896)	promoter-TSS (NR_029896)	-696	NR_029896	442898		NR_029896	ENSG00000199053	MIR324	MIRN324|hsa-mir-324|mir-324	microRNA 324	ncRNA
110731	chr19	2320951	2321450	+	0	NA	TTS (NM_016199)	TTS (NM_016199)	7386	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
48652	chr12	10423651	10423980	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3220	NM_007333	3823		NM_002261	ENSG00000205810	KLRC3	NKG2-E|NKG2E	killer cell lectin like receptor C3	protein-coding
62711	chr13	104571671	104571830	+	0	NA	Intergenic	Intergenic	-894117	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
73916	chr15	50777101	50777300	+	0	NA	Intergenic	Intergenic	-11494	NM_032802	84888		NM_032802	ENSG00000138600	SPPL2A	IMD86|IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
182738	chr5	68270621	68271380	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-17519	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
129177	chr2	68168371	68168880	+	0	NA	intron (NM_001329916, intron 5 of 5)	MER49|LTR|ERV1	10737	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
5501	chr1	25763401	25763600	+	0	NA	intron (NM_001385183, intron 6 of 11)	AluSx|SINE|Alu	-36693	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
199270	chr6	111861201	111861980	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	11481	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
66183	chr14	60721021	60721930	+	0	NA	intron (NM_017420, intron 1 of 2)	CpG	2876	NM_017420	51804		NM_017420	ENSG00000100625	SIX4	AREC3	SIX homeobox 4	protein-coding
160132	chr3	20047501	20048030	+	0	NA	intron (NM_003884, intron 1 of 17)	AluSz|SINE|Alu	7319	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
112861	chr19	7578201	7578400	+	0	NA	Intergenic	MER66A|LTR|ERV1	-17563	NM_020902	57662		NM_020902	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA|PPP1R80	calmodulin regulated spectrin associated protein family member 3	protein-coding
9935	chr1	54486771	54487180	+	0	NA	Intergenic	Intergenic	-61253	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
163264	chr3	50296751	50297050	+	0	NA	exon (NM_012191, exon 2 of 2)	exon (NM_012191, exon 2 of 2)	1960	NM_001200018	24142		NM_012191	ENSG00000243477	NAA80	FUS-2|FUS2|HsNAAA80|NAT6	N-alpha-acetyltransferase 80, NatH catalytic subunit	protein-coding
6978	chr1	31792151	31792250	+	0	NA	intron (NM_144569, intron 15 of 15)	intron (NM_144569, intron 15 of 15)	23851	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
171628	chr3	197516521	197519010	+	0	NA	intron (NM_203315, intron 5 of 6)	intron (NM_203315, intron 5 of 6)	-8104	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
236172	chrX	65519171	65519550	+	0	NA	intron (NM_001375328, intron 11 of 13)	L2|LINE|L2	15427	NM_001375329	81887		NM_031206	ENSG00000001497	LAS1L	Las1|Las1-like|MRXSWTS|WTS|dJ475B7.2	LAS1 like ribosome biogenesis factor	protein-coding
178425	chr4	147786151	147786650	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	3805	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
3051	chr1	12158371	12158980	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-8268	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
49600	chr12	27332601	27333560	+	0	NA	exon (NM_001248005, exon 1 of 14)	exon (NM_001248005, exon 1 of 14)	244	NM_020183	56938		NM_020183	ENSG00000029153	BMAL2	ARNTL2|CLIF|MOP9|PASD9|bHLHe6	basic helix-loop-helix ARNT like 2	protein-coding
75258	chr15	64950151	64950250	+	0	NA	intron (NM_182703, intron 14 of 14)	MIR3|SINE|MIR	38298	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
103112	chr17	77366901	77367300	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	-6237	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
180868	chr5	32711051	32711350	+	0	NA	promoter-TSS (NM_000908)	promoter-TSS (NM_000908)	-121	NM_000908	4883		NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|BOMOS|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor 3	protein-coding
18096	chr1	160691421	160691880	+	0	NA	intron (NM_001256030, intron 1 of 2)	LTR5|LTR|ERVK	20172	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
172754	chr4	2849451	2850580	+	0	NA	intron (NM_001286645, intron 1 of 17)	L1MB7|LINE|L1	5865	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
94516	chr17	29446751	29447050	+	0	NA	intron (NM_025142, intron 1 of 17)	AluSq2|SINE|Alu	55975	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
54969	chr12	96307171	96307400	+	0	NA	intron (NM_002595, intron 5 of 16)	AluSp|SINE|Alu	51787	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
199543	chr6	118812871	118813300	+	0	NA	TTS (NM_001378359)	TTS (NM_001378359)	30377	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
196740	chr6	45333171	45333330	+	0	NA	intron (NM_001024630, intron 2 of 8)	intron (NM_001024630, intron 2 of 8)	4920	NR_103532	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
137493	chr2	197148171	197148530	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-49641	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
70980	chr14	104707851	104708100	+	0	NA	exon (NM_001031714, exon 8 of 22)	exon (NM_001031714, exon 8 of 22)	-16254	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
127257	chr2	38701401	38701900	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	35536	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
236404	chrX	71159221	71159730	+	0	NA	intron (NM_181303, intron 5 of 7)	intron (NM_181303, intron 5 of 7)	14634	NM_001321276	54413		NM_018977	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
191578	chr6	12014171	12014330	+	0	NA	intron (NM_002114, intron 1 of 8)	intron (NM_002114, intron 1 of 8)	1938	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
197150	chr6	59546271	59546830	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1585104	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
78278	chr15	90874171	90874600	+	0	NA	intron (NM_001289824, intron 1 of 15)	intron (NM_001289824, intron 1 of 15)	1531	NM_001382621	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
30743	chr10	84180821	84181080	+	0	NA	intron (NM_207373, intron 2 of 2)	SVA_B|Retroposon|SVA	7149	NM_207373	387695		NM_207373	ENSG00000188373	GPR15LG	AP-57|AP57|C10orf99|CSBF|GPR15L|UNQ1833	G protein-coupled receptor 15 ligand	protein-coding
234706	chrX	20459421	20459680	+	0	NA	Intergenic	Intergenic	-192641	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
210052	chr7	95395851	95396580	+	0	NA	intron (NM_000940, intron 1 of 8)	intron (NM_000940, intron 1 of 8)	160	NM_000940	5446		NM_000940	ENSG00000105852	PON3	-	paraoxonase 3	protein-coding
45672	chr11	119029001	119029200	+	0	NA	intron (NM_001164279, intron 2 of 10)	intron (NM_001164279, intron 2 of 10)	380	NM_001164280	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
200260	chr6	132496771	132496930	+	0	NA	intron (NR_137169, intron 2 of 8)	intron (NR_137169, intron 2 of 8)	15933	NM_001326578	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
93453	chr17	18680401	18680600	+	0	NA	intron (NM_001368134, intron 3 of 3)	intron (NM_001368134, intron 3 of 3)	1814	NM_001368135	2310		NM_001368134	ENSG00000240445	FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B	protein-coding
154372	chr22	33919471	33919930	+	0	NA	intron (NM_001362949, intron 1 of 15)	intron (NM_001362949, intron 1 of 15)	776	NM_001378628	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
217280	chr8	27353451	27353950	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	28136	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
180896	chr5	34180501	34180730	+	0	NA	intron (NR_146599, intron 3 of 11)	L2c|LINE|L2	-8966	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
131305	chr2	96113151	96113950	+	0	NA	3' UTR (NM_000682, exon 1 of 1)	3' UTR (NM_000682, exon 1 of 1)	3021	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
209693	chr7	82677271	82677900	+	0	NA	Intergenic	Intergenic	-233629	NM_001366867	781		NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|DEE110|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding
91391	chr17	4586601	4586800	+	0	NA	intron (NM_001375361, intron 1 of 6)	intron (NM_001375361, intron 1 of 6)	2171	NM_001375361	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
95399	chr17	35946871	35947480	+	0	NA	Intergenic	Intergenic	-3462	NM_020426	57151		NM_020426	ENSG00000275722	LYZL6	HEL-S-6a|LYC1|LYZB|PRO1485|TKAL754|UNQ754	lysozyme like 6	protein-coding
166649	chr3	119911751	119912280	+	0	NA	intron (NM_001146156, intron 6 of 10)	Tigger1|DNA|TcMar-Tigger	129305	NM_022002	8856		NM_003889	ENSG00000144852	NR1I2	BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR	nuclear receptor subfamily 1 group I member 2	protein-coding
85710	chr16	56610201	56610880	+	0	NA	Intergenic	Intergenic	1956	NM_005953	4502		NM_005953	ENSG00000125148	MT2A	MT-2|MT-II|MT2	metallothionein 2A	protein-coding
220332	chr8	98948221	98949050	+	0	NA	intron (NM_001286841, intron 2 of 4)	CpG	4193	NM_001142462	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
152538	chr22	20990871	20991730	+	0	NA	intron (NM_006767, intron 8 of 20)	intron (NM_006767, intron 8 of 20)	9003	NM_006767	8216		NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|NS2|SWNTS2	leucine zipper like post translational regulator 1	protein-coding
31292	chr10	92572371	92572530	+	0	NA	intron (NM_001322795, intron 1 of 25)	intron (NM_001322795, intron 1 of 25)	1056	NM_001322796	3416		NM_004969	ENSG00000119912	IDE	INSULYSIN	insulin degrading enzyme	protein-coding
5068	chr1	24667971	24668330	+	0	NA	intron (NR_159382, intron 14 of 17)	AluSx1|SINE|Alu	24571	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
80429	chr16	2636671	2637480	+	0	NA	Intergenic	Intergenic	-1907	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
198662	chr6	107827571	107828380	+	0	NA	Intergenic	Intergenic	-3662	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
180437	chr5	10533271	10533500	+	0	NA	Intergenic	(CTCCC)n|Simple_repeat|Simple_repeat	-11301	NR_134289	389273		NR_134289	ENSG00000249160	LINC02213	-	long intergenic non-protein coding RNA 2213	ncRNA
10474	chr1	66343901	66344200	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	-10485	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
46497	chr11	128351201	128351400	+	0	NA	Intergenic	Intergenic	142534	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
211830	chr7	108462651	108462950	+	0	NA	Intergenic	L1MB2|LINE|L1	-6080	NM_001371122	4897		NM_005010	ENSG00000091129	NRCAM	NEDNMS	neuronal cell adhesion molecule	protein-coding
50069	chr12	44814371	44814930	+	0	NA	intron (NM_001145108, intron 3 of 19)	intron (NM_001145108, intron 3 of 19)	61011	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
143524	chr20	31555571	31555930	+	0	NA	intron (NM_178580, intron 8 of 12)	AluJr|SINE|Alu	17513	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
24512	chr1	244652551	244654430	+	0	NA	intron (NM_001297746, intron 1 of 3)	CpG	364	NM_001297746	51029		NM_016076	ENSG00000121644	DESI2	C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
4691	chr1	23030471	23030630	+	0	NA	exon (NM_001009999, exon 2 of 21)	exon (NM_001009999, exon 2 of 21)	11082	NM_001009999	23028		NM_015013	ENSG00000004487	KDM1A	AOF2|BHC110|CPRF|KDM1|LSD1	lysine demethylase 1A	protein-coding
185769	chr5	132369471	132370650	+	0	NA	promoter-TSS (NR_110997)	promoter-TSS (NR_110997)	-144	NR_110997	553103		NR_110997	ENSG00000233006	MIR3936HG	SLC22A5-AS1	MIR3936 host gene	ncRNA
101016	chr17	64773121	64773380	+	0	NA	intron (NR_026899, intron 3 of 12)	intron (NR_026899, intron 3 of 12)	-7509	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
74080	chr15	52677271	52678800	+	0	NA	non-coding (NR_104457, exon 2 of 13)	non-coding (NR_104457, exon 2 of 13)	722	NR_169545	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
110609	chr19	2190801	2191150	+	0	NA	intron (NM_032482, intron 4 of 27)	intron (NM_032482, intron 4 of 27)	27042	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
223803	chr8	144790321	144790830	+	0	NA	intron (NM_033301, intron 4 of 5)	intron (NM_033301, intron 4 of 5)	1416	NR_106909	102465978		NR_106909	ENSG00000283764	MIR6850	hsa-mir-6850	microRNA 6850	ncRNA
35738	chr11	2096301	2096900	+	0	NA	Intergenic	Intergenic	37609	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
159552	chr3	14653451	14653750	+	0	NA	intron (NM_016474, intron 1 of 10)	intron (NM_016474, intron 1 of 10)	1838	NM_016474	51244		NM_016474	ENSG00000154781	CCDC174	C3orf19|HSPC212|IHPM|IHPMR|ctr1	coiled-coil domain containing 174	protein-coding
176224	chr4	84582351	84583730	+	0	NA	promoter-TSS (NM_001263)	promoter-TSS (NM_001263)	-87	NM_001263	1040		NM_001263	ENSG00000163624	CDS1	CDS 1	CDP-diacylglycerol synthase 1	protein-coding
61952	chr13	79374121	79374380	+	0	NA	intron (NM_022118, intron 3 of 20)	AluSz|SINE|Alu	31971	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
19209	chr1	172448921	172449230	+	0	NA	intron (NM_139240, intron 3 of 6)	intron (NM_139240, intron 3 of 6)	-3818	NM_001300760	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
228128	chr9	96656451	96656550	+	0	NA	Intergenic	AluJo|SINE|Alu	-1183	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
6610	chr1	28876571	28877650	+	0	NA	Intergenic	Intergenic	-9981	NM_203342	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
35569	chr11	1685071	1685230	+	0	NA	intron (NR_026642, intron 1 of 2).5	intron (NR_026642, intron 1 of 2).5	479	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
31561	chr10	97275851	97276400	+	0	NA	intron (NM_001204300, intron 1 of 10)	SVA_F|Retroposon|SVA	-5468	NM_001256423	84986		NM_032900	ENSG00000213390	ARHGAP19	-	Rho GTPase activating protein 19	protein-coding
217334	chr8	27581921	27582380	+	0	NA	Intergenic	Intergenic	28601	NR_106902	102465508		NR_106902	ENSG00000284280	MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
209794	chr7	87631351	87631450	+	0	NA	intron (NM_138290, intron 1 of 11)	AluY|SINE|Alu	3002	NM_001134405	154661		NM_138290	ENSG00000105784	RUNDC3B	RPIB9|RPIP9	RUN domain containing 3B	protein-coding
217001	chr8	23159571	23160250	+	0	NA	intron (NM_003840, intron 1 of 8)	MER34|LTR|ERV1	4117	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
51536	chr12	52349051	52349550	+	0	NA	Intergenic	L1ME3G|LINE|L1	15322	NM_001300810	3891		NM_002283	ENSG00000135443	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
24388	chr1	241918271	241918830	+	0	NA	Intergenic	Intergenic	-39217	NM_001290693	441925		NM_001290693	ENSG00000196289	BECN2	BECN1L1|BECN1P1	beclin 2	protein-coding
227054	chr9	83977171	83977650	+	0	NA	intron (NM_031263, intron 4 of 16)	intron (NM_031263, intron 4 of 16)	2805	NM_031263	3190		NM_002140	ENSG00000165119	HNRNPK	AUKS|CSBP|HNRPK|TUNP	heterogeneous nuclear ribonucleoprotein K	protein-coding
107500	chr18	47914101	47914500	+	0	NA	intron (NM_001135937, intron 1 of 9)	intron (NM_001135937, intron 1 of 9)	16359	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
110959	chr19	2941221	2941950	+	0	NA	intron (NM_021217, intron 1 of 3)	intron (NM_021217, intron 1 of 3)	3386	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
72369	chr15	31356801	31358200	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	30665	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
69703	chr14	98184971	98186300	+	0	NA	Intergenic	Intergenic	-207511	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
52132	chr12	54207551	54208100	+	0	NA	Intergenic	Intergenic	-18831	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
37845	chr11	33698121	33698530	+	0	NA	3' UTR (NM_001166692, exon 2 of 2)	3' UTR (NM_001166692, exon 2 of 2)	2415	NM_001166692	100131378		NM_001166692	ENSG00000205177	C11orf91	-	chromosome 11 open reading frame 91	protein-coding
108086	chr18	61551521	61551780	+	0	NA	intron (NM_031891, intron 11 of 11)	intron (NM_031891, intron 11 of 11)	-196526	NR_103449	100996669		NR_103449		LINC01544	-	long intergenic non-protein coding RNA 1544	ncRNA
29048	chr10	67785001	67785400	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	52979	NM_201262	56521		NM_021800	ENSG00000108176	DNAJC12	HPANBH4|JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
72167	chr15	29119751	29120050	+	0	NA	TTS (NM_015307)	TTS (NM_015307)	49242	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
182390	chr5	61280151	61280550	+	0	NA	Intergenic	Intergenic	-15421	NR_146624	105378992		NR_146624	ENSG00000249279	LINC02057	-	long intergenic non-protein coding RNA 2057	ncRNA
230114	chr9	127699151	127700050	+	0	NA	Intergenic	U6|snRNA|snRNA	-7388	NM_001012502	286207		NM_001012502	ENSG00000160401	CFAP157	C9orf117	cilia and flagella associated protein 157	protein-coding
98666	chr17	47839351	47839650	+	0	NA	exon (NM_001145023, exon 4 of 7)	exon (NM_001145023, exon 4 of 7)	1773	NM_001145023	90507		NM_138355	ENSG00000141295	SCRN2	Ses2	secernin 2	protein-coding
41862	chr11	67190151	67190450	+	0	NA	intron (NM_012308, intron 5 of 20)	AluSq2|SINE|Alu	-49714	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
159635	chr3	15300521	15301230	+	0	NA	intron (NM_004844, intron 3 of 8)	intron (NM_004844, intron 3 of 8)	31711	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
48725	chr12	10705021	10706380	+	0	NA	intron (NM_001145426, intron 5 of 8)	L1MC4|LINE|L1	17623	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
133856	chr2	128316301	128316800	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	2318	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
67195	chr14	68898621	68899680	+	0	NA	intron (NM_001130004, intron 8 of 21)	(CCCACAC)n|Simple_repeat|Simple_repeat	80152	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
126370	chr2	27444371	27445150	+	0	NA	TTS (NM_001321325)	TTS (NM_001321325)	2379	NM_001321325	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
227440	chr9	90149821	90150200	+	0	NA	Intergenic	L1HS|LINE|L1	-108511	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
131667	chr2	97666421	97666880	+	0	NA	Intergenic	AluJb|SINE|Alu	-2606	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
201669	chr6	149505951	149506050	+	0	NA	intron (NM_139126, intron 12 of 12)	intron (NM_139126, intron 12 of 12)	-20986	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
158091	chr22	49995721	49995980	+	0	NA	3' UTR (NM_001001694, exon 15 of 15)	3' UTR (NM_001001694, exon 15 of 15)	16915	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
118011	chr19	34145501	34146100	+	0	NA	Intergenic	Intergenic	-26704	NR_169265	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
124904	chr2	8477421	8478650	+	0	NA	Intergenic	Intergenic	105757	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
126845	chr2	31413971	31414130	+	0	NA	intron (NM_000379, intron 1 of 35)	intron (NM_000379, intron 1 of 35)	692	NM_000379	7498		NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
208510	chr7	69696021	69696380	+	0	NA	intron (NM_001127232, intron 1 of 4)	intron (NM_001127232, intron 1 of 4)	97725	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
114951	chr19	13988051	13988750	+	0	NA	intron (NM_002918, intron 2 of 20)	intron (NM_002918, intron 2 of 20)	17920	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
195844	chr6	41426151	41426850	+	0	NA	Intergenic	Intergenic	-75944	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
160964	chr3	36992351	36993980	+	0	NA	promoter-TSS (NM_001354623)	promoter-TSS (NM_001354623)	-34	NM_014805	9852		NM_014805	ENSG00000178567	EPM2AIP1	-	EPM2A interacting protein 1	protein-coding
117163	chr19	19334551	19334850	+	0	NA	intron (NM_015329, intron 1 of 18)	intron (NM_015329, intron 1 of 18)	13871	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
87947	chr16	79590671	79590830	+	0	NA	Intergenic	Intergenic	9987	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
81894	chr16	11714201	11715100	+	0	NA	intron (NM_001303447, intron 5 of 12)	AluY|SINE|Alu	28207	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
140318	chr2	232506551	232507050	+	0	NA	Intergenic	Intergenic	-13588	NM_001195129	646960		NM_001195129	ENSG00000237412	PRSS56	MCOP6	serine protease 56	protein-coding
79340	chr16	584001	584700	+	0	NA	TTS (NM_148920)	TTS (NM_148920)	-5007	NM_001172663	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
148090	chr20	63306621	63307130	+	0	NA	intron (NM_020882, intron 5 of 35)	intron (NM_020882, intron 5 of 35)	13689	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
100183	chr17	58658401	58659980	+	0	NA	intron (NM_198393, intron 1 of 32)	U1|snRNA|snRNA	32855	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
10732	chr1	76095951	76096050	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	21254	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
102700	chr17	76140901	76142100	+	0	NA	promoter-TSS (NM_001454)	promoter-TSS (NM_001454)	-255	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
236096	chrX	56799751	56799850	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-62216	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
189880	chr5	177315321	177315780	+	0	NA	Intergenic	Intergenic	-3652	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
18326	chr1	161184001	161184330	+	0	NA	TTS (NM_005099)	TTS (NM_005099)	-6197	NM_001199873	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
67160	chr14	68780801	68781700	+	0	NA	Intergenic	Intergenic	11817	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
111081	chr19	3175671	3176500	+	0	NA	Intergenic	LTR3B_|LTR|ERVK	-2684	NM_003775	8698		NM_003775	ENSG00000125910	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
201580	chr6	149335251	149335750	+	0	NA	intron (NM_015093, intron 1 of 8)	AluJo|SINE|Alu	17200	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
114601	chr19	12952401	12953050	+	0	NA	TTS (NM_052850)	TTS (NM_052850)	4498	NM_052850	90480		NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1|mL64	GADD45G interacting protein 1	protein-coding
124654	chr2	2686001	2686400	+	0	NA	Intergenic	Intergenic	-354925	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
15303	chr1	149850061	149851300	+	0	NA	promoter-TSS (NR_036461)	promoter-TSS (NR_036461)	93	NR_036461	337873		NR_036461	ENSG00000261716	H2BC20P	H2B/t|HIST2H2BC|HIST2H2BD|LETN	H2B clustered histone 20, pseudogene	pseudo
67408	chr14	69802521	69802980	+	0	NA	Intergenic	L1M7|LINE|L1	-5509	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
95197	chr17	35220771	35220930	+	0	NA	Intergenic	Intergenic	-22222	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
28662	chr10	60100121	60100400	+	0	NA	intron (NM_001149, intron 6 of 20)	intron (NM_001149, intron 6 of 20)	40756	NM_001149	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
12910	chr1	110606251	110608450	+	0	NA	promoter-TSS (NM_004974)	promoter-TSS (NM_004974)	-992	NM_004974	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
235695	chrX	48737051	48737980	+	0	NA	Intergenic	CpG	-24232	NM_001080489	392465		NM_001080489	ENSG00000171433	GLOD5	-	glyoxalase domain containing 5	protein-coding
208767	chr7	73547871	73548230	+	0	NA	intron (NM_001707, intron 2 of 5)	AluSz|SINE|Alu	9186	NR_036682	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
138769	chr2	216004301	216004500	+	0	NA	intron (NM_001372189, intron 1 of 4)	L2a|LINE|L2	9151	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
114865	chr19	13867171	13867330	+	0	NA	intron (NR_146097, intron 1 of 1)	AluJb|SINE|Alu	2047	NR_146096	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
78758	chr15	99100401	99100790	+	0	NA	Intergenic	CpG	-4485	NM_015286	23336		NM_015286	ENSG00000182253	SYNM	DMN|SYN	synemin	protein-coding
203648	chr7	981671	981830	+	0	NA	intron (NR_156697, intron 4 of 4)	AluJo|SINE|Alu	-1431	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
198916	chr6	110178651	110179400	+	0	NA	intron (NM_001024934, intron 1 of 9)	CpG	645	NM_003931	8936		NM_003931	ENSG00000112290	WASF1	NEDALVS|SCAR1|WAVE|WAVE1	WASP family member 1	protein-coding
194056	chr6	31856521	31856850	+	0	NA	TTS (NM_000434).3	TTS (NM_000434).3	6136	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
42043	chr11	67448501	67449700	+	0	NA	Intergenic	AluY|SINE|Alu	-3303	NM_001379183	57010		NM_145200	ENSG00000175544	CABP4	CRSD|CSNB2B	calcium binding protein 4	protein-coding
109318	chr19	584321	585180	+	0	NA	Intergenic	Intergenic	-5131	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
193598	chr6	30722451	30723380	+	0	NA	intron (NR_120608, intron 2 of 3)	intron (NR_120608, intron 2 of 3)	1277	NM_001293215	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
157738	chr22	46605571	46605950	+	0	NA	intron (NM_001366660, intron 1 of 17)	intron (NM_001366660, intron 1 of 17)	-14626	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
149183	chr21	20999671	20999930	+	0	NA	intron (NM_001352595, intron 1 of 14)	intron (NM_001352595, intron 1 of 14)	1391	NM_001352594	4685		NM_004540	ENSG00000154654	NCAM2	NCAM21	neural cell adhesion molecule 2	protein-coding
124753	chr2	6920021	6920600	+	0	NA	intron (NM_001349184, intron 1 of 8)	intron (NM_001349184, intron 1 of 8)	1516	NM_001349184	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
111200	chr19	3465551	3465730	+	0	NA	3' UTR (NM_001245005, exon 10 of 10)	3' UTR (NM_001245005, exon 10 of 10)	14885	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
47240	chr12	1085371	1085530	+	0	NA	intron (NM_178039, intron 3 of 17)	intron (NM_178039, intron 3 of 17)	57702	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
99293	chr17	49790871	49791030	+	0	NA	intron (NM_001199155, intron 1 of 13)	intron (NM_001199155, intron 1 of 13)	2269	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
61617	chr13	73702201	73703150	+	0	NA	intron (NM_007249, intron 7 of 7)	intron (NM_007249, intron 7 of 7)	138431	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
237385	chrX	119471571	119472400	+	0	NA	TTS (NM_001152)	TTS (NM_001152)	-2865	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
191986	chr6	16168901	16169150	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	27469	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
123233	chr19	52940151	52940480	+	0	NA	intron (NM_001202473, intron 3 of 3)	intron (NM_001202473, intron 3 of 3)	2279	NR_037805	399669		NM_203307	ENSG00000293246	ZNF321P	ZNF321	zinc finger protein 321, pseudogene	pseudo
96574	chr17	40484021	40484800	+	0	NA	intron (NM_032865, intron 6 of 12)	MIR1_Amn|SINE|MIR	17213	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
66830	chr14	64771251	64771750	+	0	NA	intron (NM_001355436, intron 26 of 35)	MIR|SINE|MIR	14186	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
187538	chr5	142733801	142735200	+	0	NA	Intergenic	AluSc|SINE|Alu	-11100	NR_110558	101926975		NR_110558	ENSG00000236714	LINC01844	-	long intergenic non-protein coding RNA 1844	ncRNA
216595	chr8	22044071	22044550	+	0	NA	intron (NM_001304478, intron 2 of 4)	intron (NM_001304478, intron 2 of 4)	1490	NM_003867	8822		NM_003867	ENSG00000158815	FGF17	FGF-13|FGF-17|HH20	fibroblast growth factor 17	protein-coding
88210	chr16	81830121	81830380	+	0	NA	intron (NM_002661, intron 2 of 32)	AluJb|SINE|Alu	50959	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
105941	chr18	3599471	3599830	+	0	NA	intron (NM_001242765, intron 4 of 8)	AluSc|SINE|Alu	-4087	NR_119377	84777		NM_032691		DLGAP1-AS2	DLPAP1-AS2	DLGAP1 antisense RNA 2	ncRNA
58433	chr12	131932971	131933330	+	0	NA	intron (NM_025215, intron 3 of 5)	THE1D|LTR|ERVL-MaLR	3874	NM_001002020	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
26930	chr10	26480971	26481130	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	42709	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
75778	chr15	68790351	68790650	+	0	NA	intron (NM_006305, intron 1 of 6)	intron (NM_006305, intron 1 of 6)	11425	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
119508	chr19	40521501	40522000	+	0	NA	intron (NM_020971, intron 16 of 35)	intron (NM_020971, intron 16 of 35)	-8741	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
114739	chr19	13212621	13213330	+	0	NA	intron (NM_023035, intron 40 of 46)	L2a|LINE|L2	62564	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
80501	chr16	2720841	2722430	+	0	NA	Intergenic	Intergenic	-1411	NM_031948	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
177554	chr4	119209901	119210100	+	0	NA	intron (NR_125931, intron 1 of 2)	intron (NR_125931, intron 1 of 2)	-2627	NM_019050	54532		NM_019050	ENSG00000145390	USP53	PFIC7	ubiquitin specific peptidase 53	protein-coding
165075	chr3	71467501	71467700	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	74489	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
193566	chr6	30646421	30648830	+	0	NA	TTS (NR_033823).2	TTS (NR_033823).2	492	NM_001161376	221545		NM_145029	ENSG00000204564	C6orf136	-	chromosome 6 open reading frame 136	protein-coding
164473	chr3	59957221	59957480	+	0	NA	intron (NR_135491, intron 4 of 6)	MLT1B|LTR|ERVL-MaLR	123559	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
35820	chr11	2262501	2262700	+	0	NA	Intergenic	Intergenic	7988	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
147436	chr20	58906671	58907150	+	0	NA	intron (NM_001077488, intron 6 of 12)	intron (NM_001077488, intron 6 of 12)	14747	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
138835	chr2	216422871	216423230	+	0	NA	intron (NM_014140, intron 5 of 17)	MIR|SINE|MIR	10285	NM_001127207	50485		NM_014140	ENSG00000138375	SMARCAL1	HARP|HHARP	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1	protein-coding
862	chr1	1620801	1621130	+	0	NA	intron (NM_001170687, intron 2 of 19)	intron (NM_001170687, intron 2 of 19)	5110	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
142842	chr20	17572321	17572580	+	0	NA	intron (NM_006870, intron 1 of 3)	MamSINE1|SINE|tRNA-RTE	2375	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
186181	chr5	134207971	134208150	+	0	NA	intron (NM_002715, intron 1 of 6)	intron (NM_002715, intron 1 of 6)	17494	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
163786	chr3	52393651	52393950	+	0	NA	intron (NM_015512, intron 66 of 77)	AluSz6|SINE|Alu	16208	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
112367	chr19	5981021	5981480	+	0	NA	intron (NR_046376, intron 1 of 3)	AluSx3|SINE|Alu	2847	NR_046376	100128568		NR_046376	ENSG00000266983	RANBP3-DT	-	RANBP3 divergent transcript	ncRNA
113259	chr19	8508621	8509330	+	0	NA	TTS (NM_001146175)	TTS (NM_001146175)	5192	NM_032370	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
1538	chr1	3373271	3373430	+	0	NA	intron (NM_199454, intron 3 of 16)	intron (NM_199454, intron 3 of 16)	-81315	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
63005	chr13	112586151	112586800	+	0	NA	intron (NM_001286278, intron 1 of 20)	intron (NM_001286278, intron 1 of 20)	1678	NM_006322	10426		NM_006322	ENSG00000126216	TUBGCP3	104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex component 3	protein-coding
166676	chr3	120244221	120244550	+	0	NA	5' UTR (NM_153002, exon 2 of 10)	5' UTR (NM_153002, exon 2 of 10)	40837	NM_001168271	165829		NM_153002	ENSG00000175697	GPR156	DFNB121|GABABL|PGR28	G protein-coupled receptor 156	protein-coding
156883	chr22	42140771	42140930	+	0	NA	intron (NR_111920, intron 8 of 9)	intron (NR_111920, intron 8 of 9)	3633	NR_002570	1564		NM_001002910		CYP2D7	CYP2D|CYP2D6|CYP2D7AP|CYP2D7P|CYP2D7P1|CYP2D@|P450C2D|P450DB1|RNA40057	cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)	protein-coding
48917	chr12	12616551	12617800	+	0	NA	intron (NM_001310, intron 1 of 3)	intron (NM_001310, intron 1 of 3)	5299	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
38989	chr11	47593501	47593830	+	0	NA	intron (NM_031909, intron 1 of 1)	intron (NM_031909, intron 1 of 1)	746	NM_031909	114900		NM_031909	ENSG00000172247	C1QTNF4	CTRP4|ZACRP4	C1q and TNF related 4	protein-coding
108534	chr18	74456971	74457600	+	0	NA	promoter-TSS (NM_001044369)	promoter-TSS (NM_001044369)	23	NM_001044369	125704		NM_001044369	ENSG00000187773	DIPK1C	C18orf51|FAM69C|FNCAD	divergent protein kinase domain 1C	protein-coding
231533	chr9	131441201	131441800	+	0	NA	intron (NM_013318, intron 5 of 31)	AluJr4|SINE|Alu	-44165	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
4849	chr1	23693701	23694100	+	0	NA	exon (NM_001199802, exon 3 of 6)	exon (NM_001199802, exon 3 of 6)	2094	NM_000975	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
34808	chr11	280001	280420	+	0	NA	exon (NM_001276700, exon 4 of 8)	exon (NM_001276700, exon 4 of 8)	1640	NM_138329	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
69226	chr14	92750071	92751400	+	0	NA	Intergenic	LTR12|LTR|ERV1	-2108	NM_001008530	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
230636	chr9	128656051	128657580	+	0	NA	promoter-TSS (NM_052844)	promoter-TSS (NM_052844)	35	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
126527	chr2	28541971	28542330	+	0	NA	intron (NM_153021, intron 13 of 57)	intron (NM_153021, intron 13 of 57)	-24207	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
218300	chr8	42497671	42497830	+	0	NA	intron (NM_006749, intron 1 of 10)	intron (NM_006749, intron 1 of 10)	3481	NM_001257180	6575		NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC2|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
130130	chr2	74690751	74690930	+	0	NA	Intergenic	Intergenic	36593	NM_004263	10505		NM_004263	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	ssemaphorin 4F	protein-coding
40204	chr11	63242121	63242380	+	0	NA	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-12598	NM_199352	387601		NM_199352	ENSG00000196600	SLC22A25	HIMTP|UST6	solute carrier family 22 member 25	protein-coding
147897	chr20	62886421	62886830	+	0	NA	TTS (NM_080797)	TTS (NM_080797)	-3722	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
43799	chr11	86446571	86446730	+	0	NA	intron (NR_147830, intron 11 of 13)	intron (NR_147830, intron 11 of 13)	71763	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
34101	chr10	125822621	125824250	+	0	NA	promoter-TSS (NR_136678)	promoter-TSS (NR_136678)	-111	NM_078469	56647		NM_016567	ENSG00000107949	BCCIP	TOK-1|TOK1	BRCA2 and CDKN1A interacting protein	protein-coding
203960	chr7	1560571	1561030	+	0	NA	Intergenic	Intergenic	-4595	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
71949	chr15	23050571	23051280	+	0	NA	Intergenic	L1M1|LINE|L1	-11252	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
75941	chr15	70259871	70260550	+	0	NA	Intergenic	MIR3|SINE|MIR	-162293	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
236068	chrX	56569701	56570100	+	0	NA	Intergenic	Intergenic	6273	NM_013444	29978		NM_013444	ENSG00000188021	UBQLN2	ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2	ubiquilin 2	protein-coding
137215	chr2	191355101	191355620	+	0	NA	intron (NM_001161819, intron 7 of 30)	MLT1H2|LTR|ERVL-MaLR	109956	NM_001330238	4430		NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
153874	chr22	30262501	30264000	+	0	NA	3' UTR (NM_001319108, exon 3 of 3)	3' UTR (NM_001319108, exon 3 of 3)	2990	NM_001319108	5008		NM_020530	ENSG00000099985	OSM	-	oncostatin M	protein-coding
205191	chr7	7677171	7678230	+	0	NA	intron (NM_001302350, intron 3 of 4)	AluYa5|SINE|Alu	36948	NM_001302348	729852		NM_001302348	ENSG00000219545	UMAD1	RPA3-AS1|RPA3OS	UBAP1-MVB12-associated (UMA) domain containing 1	protein-coding
39164	chr11	57334771	57336550	+	0	NA	intron (NM_003146, intron 1 of 16)	CpG	232	NM_003146	6749		NM_003146	ENSG00000149136	SSRP1	FACT|FACT80|T160	structure specific recognition protein 1	protein-coding
38238	chr11	36467221	36467480	+	0	NA	Intergenic	Intergenic	42922	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
68107	chr14	75332701	75333100	+	0	NA	Intergenic	Intergenic	38496	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
91021	chr17	2808971	2809330	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	12712	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
95029	chr17	32485101	32485580	+	0	NA	Intergenic	Intergenic	-1653	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
17649	chr1	157170851	157171600	+	0	NA	Intergenic	Intergenic	-32634	NM_005240	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
209288	chr7	75984821	75985600	+	0	NA	intron (NM_001382659, intron 12 of 15)	intron (NM_001382659, intron 12 of 15)	9385	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
49479	chr12	25202021	25202630	+	0	NA	intron (NM_001001660, intron 1 of 2)	intron (NM_001001660, intron 1 of 2)	7088	NM_001001660	144363		NM_001001660	ENSG00000205707	ETFRF1	LYRM5	electron transfer flavoprotein regulatory factor 1	protein-coding
239522	chrY	56842201	56842430	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-111940	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
50575	chr12	48286071	48286830	+	0	NA	Intergenic	Intergenic	-42530	NM_181788	341567		NM_181788	ENSG00000187166	H1-7	H1.7|H1FNT|H1T2	H1.7 linker histone	protein-coding
37510	chr11	18524621	18524880	+	0	NA	intron (NM_006292, intron 1 of 9)	intron (NM_006292, intron 1 of 9)	2192	NM_006292	7251		NM_006292	ENSG00000074319	TSG101	TSG10|VPS23	tumor susceptibility 101	protein-coding
86561	chr16	67200571	67201200	+	0	NA	intron (NM_024712, intron 7 of 19)	intron (NM_024712, intron 7 of 19)	1510	NR_029887	442901		NR_029887	ENSG00000207948	MIR328	MIRN328|hsa-mir-328|mir-328	microRNA 328	ncRNA
105675	chr18	2640371	2640700	+	0	NA	Intergenic	AluJb|SINE|Alu	14860	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
203305	chr6	170086751	170086850	+	0	NA	Intergenic	CpG	-73842	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
229976	chr9	126781421	126782180	+	0	NA	Intergenic	Intergenic	-23206	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
72879	chr15	40306271	40307130	+	0	NA	intron (NM_001284299, intron 1 of 7)	intron (NM_001284299, intron 1 of 7)	1235	NM_004573	5330		NM_004573	ENSG00000137841	PLCB2	PLC-beta-2	phospholipase C beta 2	protein-coding
196518	chr6	43768151	43768450	+	0	NA	Intergenic	Intergenic	-1909	NM_001171628	7422		NM_003376	ENSG00000112715	VEGFA	L-VEGF|MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
66144	chr14	60257871	60258030	+	0	NA	intron (NM_177951, intron 2 of 3)	intron (NM_177951, intron 2 of 3)	8729	NM_021003	5494		NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
193762	chr6	31346721	31346980	+	0	NA	Intergenic	AluJr4|SINE|Alu	8466	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
65317	chr14	50100201	50100400	+	0	NA	intron (NR_131171, intron 1 of 8)	intron (NR_131171, intron 1 of 8)	4743	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
35075	chr11	613121	614750	+	0	NA	intron (NM_004029, intron 6 of 9).2	intron (NM_004029, intron 6 of 9).2	2015	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
163582	chr3	51959371	51959530	+	0	NA	intron (NM_033010, intron 8 of 12)	intron (NM_033010, intron 8 of 12)	3442	NM_033010	57060		NM_020418	ENSG00000090097	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding
171501	chr3	196623271	196623680	+	0	NA	Intergenic	Intergenic	9112	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
218965	chr8	61563321	61563580	+	0	NA	intron (NM_001164750, intron 17 of 24)	intron (NM_001164750, intron 17 of 24)	126361	NM_020164	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
170119	chr3	183202171	183202630	+	0	NA	intron (NM_015078, intron 25 of 29)	L1MB7|LINE|L1	-39666	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
58798	chr12	132772371	132772880	+	0	NA	3' UTR (NM_005895, exon 24 of 24)	3' UTR (NM_005895, exon 24 of 24)	-10793	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
61450	chr13	52000821	52001480	+	0	NA	intron (NM_001330579, intron 1 of 18)	L2a|LINE|L2	10300	NM_000053	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
222685	chr8	141264001	141264200	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	9533	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
180525	chr5	14496001	14496200	+	0	NA	intron (NR_134469, intron 49 of 56)	Tigger1|DNA|TcMar-Tigger	32117	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
155987	chr22	39916951	39917430	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	-9414	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
70482	chr14	102082051	102082250	+	0	NA	exon (NM_005348, exon 10 of 11)	exon (NM_005348, exon 10 of 11)	4894	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
86292	chr16	58623421	58624330	+	0	NA	intron (NM_206999, intron 1 of 30)	AluSz|SINE|Alu	5951	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
87769	chr16	75288271	75289230	+	0	NA	Intergenic	(CACAC)n|Simple_repeat|Simple_repeat	-20743	NM_001170715	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
185445	chr5	131254701	131255600	+	0	NA	Intergenic	Intergenic	-8903	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
218851	chr8	60160751	60160950	+	0	NA	Intergenic	L1PA3|LINE|L1	120550	NM_001321837	767		NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
77903	chr15	89177571	89178130	+	0	NA	intron (NM_152924, intron 6 of 10)	intron (NM_152924, intron 6 of 10)	43729	NM_000326	6017		NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
228804	chr9	111910171	111911080	+	0	NA	intron (NM_003358, intron 1 of 8)	L1MEd|LINE|L1	13811	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
106076	chr18	9120151	9120250	+	0	NA	intron (NM_021074, intron 4 of 7)	intron (NM_021074, intron 4 of 7)	16520	NR_110771	101927275		NR_110771	ENSG00000266053	NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
152729	chr22	21680921	21681380	+	0	NA	intron (NM_148175, intron 6 of 20)	intron (NM_148175, intron 6 of 20)	15138	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
12635	chr1	109199671	109200050	+	0	NA	exon (NM_001284352, exon 18 of 21)	exon (NM_001284352, exon 18 of 21)	13311	NM_001284353	57535		NM_020775	ENSG00000116299	ELAPOR1	EIG121|KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein-coding
184043	chr5	91376871	91377230	+	0	NA	intron (NR_138071, intron 2 of 7)	intron (NR_138071, intron 2 of 7)	3047	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
87538	chr16	71907601	71908330	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluSg7|SINE|Alu	12434	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
192303	chr6	21551251	21551550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-39508	NR_103790	100874531		NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
222418	chr8	134601901	134602100	+	0	NA	exon (NM_001174158, exon 6 of 14)	exon (NM_001174158, exon 6 of 14)	3929	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
233016	chr9	137016321	137016580	+	0	NA	exon (NM_001606, exon 21 of 49)	exon (NM_001606, exon 21 of 49)	-11014	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
148523	chr20	64098771	64099130	+	0	NA	3' UTR (NM_182647, exon 5 of 5)	3' UTR (NM_182647, exon 5 of 5)	6262	NM_001318854	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
190005	chr5	177474771	177474930	+	0	NA	Intergenic	Intergenic	-1216	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
97315	chr17	43244511	43246200	+	0	NA	TTS (NR_002716).4	TTS (NR_002716).4	509	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
11603	chr1	91684621	91685480	+	0	NA	intron (NR_036634, intron 17 of 17)	intron (NR_036634, intron 17 of 17)	183942	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
46264	chr11	124757851	124759000	+	0	NA	promoter-TSS (NR_120577)	promoter-TSS (NR_120577)	-709	NR_120577	101929340		NR_120577	ENSG00000250073	ESAM-AS1	-	ESAM antisense RNA 1	ncRNA
220689	chr8	101326951	101327300	+	0	NA	Intergenic	Intergenic	-41768	NR_002182	83955		NM_032031	ENSG00000228224	NACA4P	FKSG17|NACAP1	NACA family member 4, pseudogene	pseudo
113883	chr19	10673021	10673500	+	0	NA	intron (NM_153464, intron 4 of 17)	AluSx3|SINE|Alu	18914	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
211440	chr7	105070451	105070830	+	0	NA	intron (NM_182931, intron 6 of 26)	AluSz6|SINE|Alu	56435	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
15061	chr1	148446151	148446650	+	0	NA	intron (NR_027468, intron 1 of 4)	intron (NR_027468, intron 1 of 4)	13520	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
180847	chr5	32587171	32587700	+	0	NA	intron (NM_006713, intron 1 of 4)	intron (NM_006713, intron 1 of 4)	1878	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
11069	chr1	85180451	85180550	+	0	NA	intron (NM_032184, intron 3 of 6)	AluSg|SINE|Alu	20516	NM_032184	84144		NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
51474	chr12	52065451	52065750	+	0	NA	Intergenic	Intergenic	-4374	NM_021934	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
45136	chr11	117193271	117193430	+	0	NA	intron (NM_001040455, intron 23 of 25)	intron (NM_001040455, intron 23 of 25)	-5944	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
182529	chr5	65585171	65585330	+	0	NA	intron (NM_001278926, intron 10 of 11)	intron (NM_001278926, intron 10 of 11)	21954	NM_015342	23398		NM_015342	ENSG00000113593	PPWD1	-	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding
33157	chr10	112526171	112526530	+	0	NA	intron (NM_001365710, intron 3 of 7)	intron (NM_001365710, intron 3 of 7)	-78747	NM_001351082	64429		NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|DHHC6|ZNF376	zinc finger DHHC-type palmitoyltransferase 6	protein-coding
71767	chr15	21154571	21154830	+	0	NA	Intergenic	TAR1|Satellite|telo	143129	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
147879	chr20	62838271	62838430	+	0	NA	intron (NM_001853, intron 30 of 31)	Tigger3a|DNA|TcMar-Tigger	-6216	NM_080750	100132911		NM_080750		DPH3P1	C20orf143|DPH3B|ZCSL1	diphthamide biosynthesis 3 pseudogene 1	pseudo
237559	chrX	120696671	120697380	+	0	NA	Intergenic	L1PA14|LINE|L1	-66875	NM_152692	29071		NM_152692	ENSG00000171155	C1GALT1C1	AHUS8|C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS	C1GALT1 specific chaperone 1	protein-coding
107557	chr18	48805121	48805630	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	134775	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
135171	chr2	157873401	157873800	+	0	NA	intron (NM_001347666, intron 1 of 11)	intron (NM_001347666, intron 1 of 11)	1399	NM_001105	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
220560	chr8	100717871	100718430	+	0	NA	exon (NM_002568, exon 2 of 15)	exon (NM_002568, exon 2 of 15)	3938	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
179088	chr4	168450001	168450600	+	0	NA	intron (NM_001291510, intron 8 of 29)	LTR8|LTR|ERV1	30192	NM_001345927	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
150725	chr21	43742921	43743580	+	0	NA	intron (NM_001331030, intron 2 of 9)	intron (NM_001331030, intron 2 of 9)	1764	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
127081	chr2	37582501	37583530	+	0	NA	Intergenic	Intergenic	88627	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
116874	chr19	18657701	18658400	+	0	NA	intron (NM_001345983, intron 1 of 2)	intron (NM_001345983, intron 1 of 2)	13412	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
26774	chr10	22927601	22928280	+	0	NA	promoter-TSS (NM_001282746)	promoter-TSS (NM_001282746)	-84	NM_001282747	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
121163	chr19	46396851	46397150	+	0	NA	Intergenic	AluY|SINE|Alu	16564	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
10536	chr1	66969401	66970230	+	0	NA	intron (NM_001077702, intron 9 of 15)	L2|LINE|L2	39559	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
192009	chr6	16339171	16339330	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	100663	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
17341	chr1	156483301	156483900	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	7087	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
184349	chr5	96972201	96972600	+	0	NA	intron (NM_175920, intron 1 of 17)	L1MEf|LINE|L1	13967	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
115123	chr19	14365551	14365930	+	0	NA	Intergenic	AluJo|SINE|Alu	-1750	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
26615	chr10	22334751	22335990	+	0	NA	Intergenic	CpG	-10075	NM_001253855	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
231112	chr9	129821621	129822080	+	0	NA	intron (NM_000113, intron 2 of 4)	AluSz|SINE|Alu	2286	NM_000113	1861		NM_000113	ENSG00000136827	TOR1A	AMC5|DQ2|DYT1	torsin family 1 member A	protein-coding
38055	chr11	35172201	35172550	+	0	NA	intron (NM_001202557, intron 1 of 8)	HSMAR2|DNA|TcMar-Mariner	9425	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
213515	chr7	139071571	139072930	+	0	NA	intron (NM_020119, intron 7 of 12)	AluSx|SINE|Alu	-28093	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
57680	chr12	122838871	122839030	+	0	NA	intron (NM_001303097, intron 1 of 17)	MLT1D|LTR|ERVL-MaLR	3493	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
82459	chr16	16755171	16755530	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	376105	NM_001282507	101059938		NM_001282507	ENSG00000214967	NPIPA7	NPIPA8	nuclear pore complex interacting protein family member A7	protein-coding
52676	chr12	56359921	56361380	+	0	NA	promoter-TSS (NM_005419)	promoter-TSS (NM_005419)	-543	NM_198332	6773		NM_005419	ENSG00000170581	STAT2	IMD44|ISGF-3|P113|PTORCH3|STAT113	signal transducer and activator of transcription 2	protein-coding
234935	chrX	38326701	38328200	+	0	NA	promoter-TSS (NM_001367246)	promoter-TSS (NM_001367246)	59	NM_001367245	6103		NM_000328	ENSG00000156313	RPGR	COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15	retinitis pigmentosa GTPase regulator	protein-coding
69514	chr14	96100521	96100900	+	0	NA	Intergenic	Intergenic	61348	NM_001282463	56967		NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
168263	chr3	141439721	141439980	+	0	NA	intron (NM_001376165, intron 4 of 4)	intron (NM_001376165, intron 4 of 4)	36836	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
30784	chr10	84355601	84356230	+	0	NA	intron (NM_001284241, intron 1 of 2)	AluSq2|SINE|Alu	27326	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
7798	chr1	36248071	36248950	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluJr|SINE|Alu	24067	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
161962	chr3	46278351	46278450	+	0	NA	Intergenic	AluSp|SINE|Alu	35940	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
238182	chrX	136877951	136878050	+	0	NA	non-coding (NR_028477, exon 4 of 9)	non-coding (NR_028477, exon 4 of 9)	1271	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
123421	chr19	54097971	54098130	+	0	NA	intron (NM_001282350, intron 2 of 3).8	L1M5|LINE|L1	4636	NM_001282350	126014		NM_130771	ENSG00000170909	OSCAR	PIGR3|PIgR-3	osteoclast associated Ig-like receptor	protein-coding
127200	chr2	38553801	38554400	+	0	NA	Intergenic	AluJb|SINE|Alu	-38360	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
18113	chr1	160708271	160708500	+	0	NA	intron (NM_001256030, intron 1 of 2)	intron (NM_001256030, intron 1 of 2)	3437	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
178537	chr4	151017251	151017350	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1573	NM_001367550	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
83245	chr16	23877921	23878380	+	0	NA	intron (NM_212535, intron 2 of 16)	Tigger17a|DNA|TcMar-Tigger	42167	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
156259	chr22	40410051	40410750	+	0	NA	TTS (NM_001350041)	TTS (NM_001350041)	39806	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
1168	chr1	2214621	2214880	+	0	NA	Intergenic	Intergenic	-2030	NM_001282670	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
60431	chr13	40996571	40996730	+	0	NA	intron (NM_001370329, intron 1 of 9)	L1MC1|LINE|L1	-13751	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
172115	chr4	1164321	1164780	+	0	NA	Intergenic	Intergenic	8033	NM_012445	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
197107	chr6	57138141	57138480	+	0	NA	intron (NM_015555, intron 7 of 13)	AluSx3|SINE|Alu	33903	NR_110742	101927211		NR_110742		ZNF451-AS1	-	ZNF451 regulatory antisense RNA 1	ncRNA
220717	chr8	101970351	101970650	+	0	NA	intron (NM_001040625, intron 3 of 6)	intron (NM_001040625, intron 3 of 6)	-13932	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
111257	chr19	3532551	3533130	+	0	NA	intron (NM_001136198, intron 10 of 12)	intron (NM_001136198, intron 10 of 12)	-6317	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
97233	chr17	42835351	42835980	+	0	NA	intron (NR_049772, intron 4 of 9)	AluY|SINE|Alu	2268	NR_049772	10197		NM_005789	ENSG00000131467	PSME3	HEL-S-283|Ki|PA28-gamma|PA28G|PA28gamma|REG-GAMMA	proteasome activator subunit 3	protein-coding
96436	chr17	40189851	40189950	+	0	NA	intron (NM_001303534, intron 6 of 14)	AluSq|SINE|Alu	-3697	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
55298	chr12	103482301	103482680	+	0	NA	intron (NR_103526, intron 1 of 10)	L1MEd|LINE|L1	13478	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
171386	chr3	196160051	196160700	+	0	NA	non-coding (NR_034088, exon 3 of 3)	non-coding (NR_034088, exon 3 of 3)	17739	NR_034088	401109		NM_001001699	ENSG00000224652	LINC00885	-	long intergenic non-protein coding RNA 885	ncRNA
228210	chr9	97850921	97851350	+	0	NA	intron (NR_147055, intron 1 of 10)	FAM|SINE|Alu	1945	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
21918	chr1	207836321	207836580	+	0	NA	Intergenic	Intergenic	-13747	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
129199	chr2	68202521	68202800	+	0	NA	intron (NM_000945, intron 2 of 5)	AluSx1|SINE|Alu	44772	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
236047	chrX	55717471	55718400	+	0	NA	non-coding (NR_148689, exon 1 of 12)	non-coding (NR_148689, exon 1 of 12)	186	NR_148687	10325		NM_006064	ENSG00000083750	RRAGB	RAGB|bA465E19.1	Ras related GTP binding B	protein-coding
94712	chr17	30709901	30711030	+	0	NA	intron (NR_144394, intron 1 of 8)	CpG-10940	857	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
42084	chr11	67501171	67501750	+	0	NA	intron (NM_001130848, intron 5 of 23)	intron (NM_001130848, intron 5 of 23)	3903	NM_004910	9600		NM_004910	ENSG00000110697	PITPNM1	DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9	phosphatidylinositol transfer protein membrane associated 1	protein-coding
106049	chr18	8988321	8988630	+	0	NA	Intergenic	Intergenic	-114224	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
4024	chr1	18938651	18939400	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	17651	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
234502	chrX	19335101	19335330	+	0	NA	Intergenic	Intergenic	-8712	NM_001173455	5160		NM_000284	ENSG00000131828	PDHA1	E1alpha|PDHA|PDHAD|PDHCE1A|PHE1A	pyruvate dehydrogenase E1 subunit alpha 1	protein-coding
188171	chr5	150477351	150477650	+	0	NA	intron (NR_105061, intron 2 of 2)	intron (NR_105061, intron 2 of 2)	8492	NR_105061	102546298		NR_105061	ENSG00000254333	NDST1-AS1	-	NDST1 antisense RNA 1	ncRNA
19925	chr1	184453521	184453780	+	0	NA	intron (NM_030806, intron 1 of 5)	intron (NM_030806, intron 1 of 5)	66621	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
129042	chr2	65054151	65054250	+	0	NA	Intergenic	Intergenic	-2216	NM_001319101	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
92030	chr17	7480851	7480950	+	0	NA	promoter-TSS (NM_001102614)	promoter-TSS (NM_001102614)	-502	NM_001102614	643664		NM_001102614	ENSG00000259224	SLC35G6	AMAC1L3|TMEM21B	solute carrier family 35 member G6	protein-coding
115770	chr19	16340771	16341330	+	0	NA	Intergenic	L1MB5|LINE|L1	16224	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
64558	chr14	24628921	24629180	+	0	NA	Intergenic	Intergenic	5140	NM_004131	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
221280	chr8	122838001	122838200	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	56445	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
178316	chr4	145616921	145617380	+	0	NA	Intergenic	Intergenic	-2235	NM_001375644	166785		NM_172250	ENSG00000151611	MMAA	cblA	metabolism of cobalamin associated A	protein-coding
106192	chr18	10787321	10787700	+	0	NA	intron (NM_001378183, intron 15 of 55)	MIRb|SINE|MIR	-27861	NR_106846	102466735		NR_106846	ENSG00000274838	MIR6788	hsa-mir-6788	microRNA 6788	ncRNA
232759	chr9	136669101	136669700	+	0	NA	intron (NR_046367, intron 4 of 9)	intron (NR_046367, intron 4 of 9)	-1202	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
102757	chr17	76276221	76276830	+	0	NA	intron (NM_032134, intron 17 of 18)	intron (NM_032134, intron 17 of 18)	11177	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
26432	chr10	17239921	17240350	+	0	NA	Intergenic	AluSz6|SINE|Alu	-10150	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
6016	chr1	27095971	27096130	+	0	NA	Intergenic	LTR33|LTR|ERVL	59075	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
112348	chr19	5948471	5949280	+	0	NA	intron (NM_007320, intron 2 of 15)	intron (NM_007320, intron 2 of 15)	29265	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
206942	chr7	38240601	38241100	+	0	NA	Intergenic	Intergenic	32797	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
214984	chr7	152131751	152132250	+	0	NA	Intergenic	Intergenic	56963	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
75035	chr15	64145921	64146380	+	0	NA	Intergenic	Intergenic	-5581	NR_073534	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
24716	chr1	247373751	247374090	+	0	NA	intron (NR_168397, intron 2 of 3)	intron (NR_168397, intron 2 of 3)	41866	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
34607	chr10	133271101	133271300	+	0	NA	exon (NM_001164489, exon 13 of 22)	exon (NM_001164489, exon 13 of 22)	5668	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
180341	chr5	6711701	6714100	+	0	NA	promoter-TSS (NM_006999)	promoter-TSS (NM_006999)	-532	NM_001171805	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
187729	chr5	143428201	143428600	+	0	NA	intron (NM_001018075, intron 1 of 8)	L2|LINE|L2	6409	NM_001364183	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
227830	chr9	93455251	93455630	+	0	NA	intron (NM_001286723, intron 1 of 9)	L1MD2|LINE|L1	-1839	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
158873	chr3	9861801	9862000	+	0	NA	Intergenic	Intergenic	16912	NM_001199623	63924		NM_022094	ENSG00000187288	CIDEC	CIDE-3|CIDE3|FPLD5|FSP27	cell death inducing DFFA like effector c	protein-coding
195434	chr6	36959871	36960200	+	0	NA	intron (NM_153370, intron 2 of 6)	intron (NM_153370, intron 2 of 6)	5297	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
168686	chr3	150608051	150608250	+	0	NA	intron (NM_016275, intron 1 of 5)	intron (NM_016275, intron 1 of 5)	4829	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
159756	chr3	16284571	16284930	+	0	NA	intron (NM_001352980, intron 5 of 9)	MIR|SINE|MIR	19538	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
126435	chr2	27920271	27920880	+	0	NA	intron (NM_199193, intron 3 of 13)	intron (NM_199193, intron 3 of 13)	-29461	NR_028308	100302650		NR_028308		BABAM2-AS1	BRE-AS1	BABAM2 antisense RNA 1	ncRNA
68601	chr14	89598571	89599000	+	0	NA	intron (NM_001085471, intron 1 of 6)	L1MEg|LINE|L1	20380	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
312	chr1	974051	974950	+	0	NA	TTS (NM_001291367)	TTS (NM_001291367)	6673	NM_001369898	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
131960	chr2	99486601	99487230	+	0	NA	intron (NM_001321460, intron 1 of 23)	L2a|LINE|L2	3102	NM_001321455	51455		NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1 DNA directed polymerase	protein-coding
221001	chr8	115665221	115665480	+	0	NA	intron (NM_001282903, intron 1 of 6)	intron (NM_001282903, intron 1 of 6)	2663	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
229949	chr9	126680901	126681500	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	67272	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
211054	chr7	102460121	102460530	+	0	NA	intron (NM_017621, intron 1 of 2)	AluJr|SINE|Alu	4538	NM_017621	54784		NM_017621	ENSG00000160993	ALKBH4	ABH4	alkB homolog 4, lysine demethylase	protein-coding
56009	chr12	110314351	110314650	+	0	NA	intron (NM_170665, intron 5 of 19)	intron (NM_170665, intron 5 of 19)	33253	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
33359	chr10	117175901	117176280	+	0	NA	Intergenic	Intergenic	-7035	NR_121650	101927704		NR_121650	ENSG00000234474	MIR3663HG	-	MIR3663 host gene	ncRNA
32839	chr10	110035471	110036230	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-27469	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
160513	chr3	30638701	30639280	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	32389	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
51732	chr12	53223301	53223700	+	0	NA	intron (NM_001243730, intron 2 of 8)	intron (NM_001243730, intron 2 of 8)	-3138	NM_001243732	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
224681	chr9	21195051	21195600	+	0	NA	Intergenic	Intergenic	6880	NM_021057	3444		NM_021057	ENSG00000214042	IFNA7	IFN-alphaJ|IFNA-J	interferon alpha 7	protein-coding
103533	chr17	78629821	78630330	+	0	NA	non-coding (NR_110848, exon 2 of 5)	non-coding (NR_110848, exon 2 of 5)	1982	NR_110848	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
161616	chr3	43221651	43221950	+	0	NA	Intergenic	LTR33|LTR|ERVL	-64712	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
26254	chr10	14655871	14656230	+	0	NA	intron (NM_001282695, intron 2 of 5)	MamRep488|DNA|hAT-Tip100	-51649	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
216826	chr8	22581521	22582650	+	0	NA	intron (NM_198042, intron 2 of 7)	intron (NM_198042, intron 2 of 7)	1610	NM_001368120	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
35493	chr11	1518501	1518700	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-31821	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
69135	chr14	92542851	92543550	+	0	NA	intron (NM_024832, intron 1 of 9)	L3|LINE|CR1	29419	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
136244	chr2	174610621	174611180	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-12669	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
221334	chr8	123130171	123130330	+	0	NA	exon (NM_001145088, exon 16 of 20)	exon (NM_001145088, exon 16 of 20)	-48797	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
114528	chr19	12832051	12832980	+	0	NA	intron (NM_031429, intron 2 of 6)	intron (NM_031429, intron 2 of 6)	-1840	NM_001270444	83546		NM_031429	ENSG00000132026	RTBDN	-	retbindin	protein-coding
230755	chr9	128894451	128895380	+	0	NA	intron (NM_019594, intron 2 of 3)	L1MB3|LINE|L1	-12392	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
127814	chr2	44802701	44803100	+	0	NA	Intergenic	Intergenic	135988	NR_147194	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
133580	chr2	121634701	121634900	+	0	NA	intron (NM_001142274, intron 1 of 37)	intron (NM_001142274, intron 1 of 37)	14662	NM_001378005	23332		NM_015282	ENSG00000074054	CLASP1	MAST1	cytoplasmic linker associated protein 1	protein-coding
128380	chr2	55029371	55029530	+	0	NA	intron (NM_001321904, intron 2 of 9)	intron (NM_001321904, intron 2 of 9)	17876	NM_001321863	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
149458	chr21	31665521	31666250	+	0	NA	intron (NM_000454, intron 2 of 4)	MIR3|SINE|MIR	6192	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
94224	chr17	28649601	28650200	+	0	NA	intron (NM_006923, intron 2 of 2)	AluJb|SINE|Alu	-4741	NM_001363827	9703		NM_014680	ENSG00000007202	BLTP2	BCOX|BCOX1|CT101|FMP27|Hob|KIAA0100	bridge-like lipid transfer protein family member 2	protein-coding
56663	chr12	119928871	119929250	+	0	NA	Intergenic	AluSz|SINE|Alu	-51740	NM_007174	11113		NM_007174	ENSG00000122966	CIT	CITK|CRIK|MCPH17|STK21	citron rho-interacting serine/threonine kinase	protein-coding
12412	chr1	101337801	101338230	+	0	NA	intron (NR_126402, intron 1 of 4)	ERVL-B4-int|LTR|ERVL	14178	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
139774	chr2	230218321	230218900	+	0	NA	intron (NM_001378444, intron 2 of 19)	intron (NM_001378444, intron 2 of 19)	1374	NM_001378443	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
121310	chr19	46745021	46745280	+	0	NA	promoter-TSS (NM_024301)	promoter-TSS (NM_024301)	-907	NM_024301	79147		NM_024301	ENSG00000181027	FKRP	FKTR|LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
161134	chr3	38521201	38521750	+	0	NA	intron (NR_134938, intron 6 of 7)	intron (NR_134938, intron 6 of 7)	25135	NM_005107	9941		NM_005107	ENSG00000157036	EXOG	ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB	exo/endonuclease G	protein-coding
201856	chr6	150343421	150343500	+	0	NA	Intergenic	LTR49-int|LTR|ERV1	-25552	NM_203395	389434		NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
133669	chr2	127071721	127071980	+	0	NA	intron (NM_139345, intron 2 of 15)	MIRb|SINE|MIR	10215	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
176409	chr4	89109221	89109630	+	0	NA	Intergenic	AluJo|SINE|Alu	-1744	NM_001382380	166815		NM_145715	ENSG00000180346	TIGD2	HEL106	tigger transposable element derived 2	protein-coding
203667	chr7	1001151	1002580	+	0	NA	intron (NR_156697, intron 2 of 4)	intron (NR_156697, intron 2 of 4)	18684	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
228037	chr9	95981671	95982230	+	0	NA	3' UTR (NM_001375294, exon 18 of 18)	3' UTR (NM_001375294, exon 18 of 18)	39861	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
189556	chr5	174793751	174794000	+	0	NA	Intergenic	Intergenic	42141	NR_039777	100616202		NR_039777	ENSG00000266890	MIR4634	-	microRNA 4634	ncRNA
218357	chr8	43060371	43060730	+	0	NA	intron (NM_002027, intron 2 of 8)	AluSq2|SINE|Alu	4227	NM_002027	2339		NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, subunit alpha	protein-coding
72661	chr15	38532571	38532880	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	32089	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
157529	chr22	45416451	45416750	+	0	NA	intron (NM_015653, intron 2 of 6)	AluSc|SINE|Alu	2907	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
208748	chr7	73523871	73524380	+	0	NA	Intergenic	Intergenic	-1832	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
206024	chr7	26500851	26500950	+	0	NA	non-coding (NR_148504, exon 8 of 8)	non-coding (NR_148504, exon 8 of 8)	37925	NR_022006	9808		NM_014769	ENSG00000122548	KIAA0087	-	KIAA0087 lncRNA	ncRNA
184376	chr5	98769021	98769990	+	0	NA	promoter-TSS (NM_001366511)	promoter-TSS (NM_001366511)	69	NM_001012761	285704		NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule BMP co-receptor b	protein-coding
129924	chr2	73296751	73297400	+	0	NA	Intergenic	Intergenic	-3527	NM_001965	1961		NM_001965	ENSG00000135625	EGR4	AT133|NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
207473	chr7	44622551	44623170	+	0	NA	intron (NM_001363523, intron 1 of 23)	intron (NM_001363523, intron 1 of 23)	16233	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
106343	chr18	13113151	13113250	+	0	NA	intron (NM_032142, intron 40 of 44)	intron (NM_032142, intron 40 of 44)	-104482	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
36894	chr11	10770471	10770830	+	0	NA	intron (NM_001346279, intron 18 of 23)	intron (NM_001346279, intron 18 of 23)	19404	NM_014633	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
128234	chr2	54394371	54394900	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-61692	NM_003128	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
174111	chr4	36196321	36196930	+	0	NA	intron (NR_146894, intron 6 of 32)	intron (NR_146894, intron 6 of 32)	47314	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
100458	chr17	61404051	61404580	+	0	NA	intron (NM_005994, intron 3 of 6)	CpG-11509	4472	NM_005994	6909		NM_005994	ENSG00000121068	TBX2	VETD	T-box transcription factor 2	protein-coding
150892	chr21	44142171	44142450	+	0	NA	TTS (NM_001320384).2	TTS (NM_001320384).2	8627	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
106227	chr18	11905801	11906600	+	0	NA	intron (NM_001242904, intron 1 of 7)	intron (NM_001242904, intron 1 of 7)	2117	NR_040243	65258		NM_023075	ENSG00000154889	MPPE1	Cdc1|PGAP5	metallophosphoesterase 1	protein-coding
110812	chr19	2473371	2473830	+	0	NA	Intergenic	FRAM|SINE|Alu	-2527	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
65119	chr14	44912901	44913100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1083	NR_110050	101927418		NR_110050	ENSG00000258949	LOC101927418	-	uncharacterized LOC101927418	ncRNA
61111	chr13	48488451	48488550	+	0	NA	TTS (NM_001352424)	TTS (NM_001352424)	-43831	NM_005767	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
236229	chrX	65715001	65715200	+	0	NA	intron (NM_002444, intron 1 of 12)	L1PA13|LINE|L1	47446	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
41372	chr11	65980851	65981350	+	0	NA	TTS (NM_005146)	TTS (NM_005146)	19366	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
19717	chr1	181098121	181098580	+	0	NA	Intergenic	Intergenic	9650	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
119621	chr19	40786771	40786930	+	0	NA	non-coding (NR_037775, exon 9 of 10)	non-coding (NR_037775, exon 9 of 10)	8603	NM_016154	53916		NM_016154	ENSG00000167578	RAB4B	-	RAB4B, member RAS oncogene family	protein-coding
138445	chr2	206088651	206088950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2626	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
147846	chr20	62799701	62800100	+	0	NA	TTS (NR_102430)	TTS (NR_102430)	3427	NR_136405	55257		NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG domain binding protein	protein-coding
131648	chr2	97618951	97619530	+	0	NA	Intergenic	Intergenic	-26822	NM_001862	1329		NM_001862	ENSG00000135940	COX5B	COXVB	cytochrome c oxidase subunit 5B	protein-coding
95691	chr17	38427701	38429200	+	0	NA	promoter-TSS (NM_001199417).2	promoter-TSS (NM_001199417).2	-14	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
61818	chr13	75733201	75733350	+	0	NA	intron (NM_001306080, intron 3 of 30)	L1PA3|LINE|L1	-27045	NM_001366633	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
91699	chr17	6443601	6445000	+	0	NA	promoter-TSS (NM_001195228)	promoter-TSS (NM_001195228)	-155	NM_019013	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
41901	chr11	67269251	67269350	+	0	NA	intron (NM_001619, intron 1 of 20)	MIRc|SINE|MIR	2827	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
79019	chr16	56301	56900	+	0	NA	exon (NM_024571, exon 4 of 5)	exon (NM_024571, exon 4 of 5)	2772	NM_024571	79622		NM_024571	ENSG00000161981	SNRNP25	C16orf33	small nuclear ribonucleoprotein U11/U12 subunit 25	protein-coding
45909	chr11	120512921	120513380	+	0	NA	intron (NM_014619, intron 1 of 20)	intron (NM_014619, intron 1 of 20)	1402	NM_014619	2900		NM_014619	ENSG00000149403	GRIK4	EAA1|GRIK|GluK4|GluK4-2|KA1	glutamate ionotropic receptor kainate type subunit 4	protein-coding
170060	chr3	182861201	182861400	+	0	NA	intron (NM_014616, intron 12 of 29)	AluSp|SINE|Alu	67796	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
229588	chr9	123374051	123374400	+	0	NA	intron (NM_173689, intron 10 of 12)	intron (NM_173689, intron 10 of 12)	5446	NR_104603	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
142432	chr20	3924051	3924150	+	0	NA	non-coding (NR_136715, exon 7 of 7)	non-coding (NR_136715, exon 7 of 7)	-6537	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
1397	chr1	2546901	2547600	+	0	NA	Intergenic	Intergenic	-9115	NM_001297605	8764		NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
54747	chr12	93789501	93789700	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	-51777	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
139673	chr2	226984421	226985380	+	0	NA	intron (NM_001349069, intron 8 of 8)	intron (NM_001349069, intron 8 of 8)	148846	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
232931	chr9	136900271	136900680	+	0	NA	exon (NM_021138, exon 4 of 11)	exon (NM_021138, exon 4 of 11)	13742	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
181487	chr5	42960771	42961400	+	0	NA	Intergenic	AluSp|SINE|Alu	32248	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
207860	chr7	50361701	50361900	+	0	NA	intron (NM_001291840, intron 2 of 2)	AluSc|SINE|Alu	42752	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
63075	chr13	113170621	113171080	+	0	NA	intron (NM_001256134, intron 8 of 8)	intron (NM_001256134, intron 8 of 8)	12196	NM_001256134	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
210880	chr7	101160001	101160400	+	0	NA	TTS (NR_039797)	TTS (NR_039797)	727	NR_039797	100616117		NR_039797	ENSG00000264425	MIR4653	-	microRNA 4653	ncRNA
33317	chr10	114935351	114935600	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-2720	NM_139169	142940		NM_139169	ENSG00000165832	TRUB1	PUS4	TruB pseudouridine synthase family member 1	protein-coding
124359	chr19	58351301	58351900	+	0	NA	promoter-TSS (NR_015380)	promoter-TSS (NR_015380)	-370	NR_015380	503538		NR_015380	ENSG00000268895	A1BG-AS1	A1BG-AS|A1BGAS|NCRNA00181	A1BG antisense RNA 1	ncRNA
43389	chr11	77072941	77074080	+	0	NA	intron (NM_004055, intron 1 of 12)	intron (NM_004055, intron 1 of 12)	6539	NM_004055	726		NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
163086	chr3	50092251	50094030	+	0	NA	intron (NR_036627, intron 3 of 23)	AluJb|SINE|Alu	4221	NM_005778	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
157974	chr22	49823501	49823850	+	0	NA	non-coding (NR_146334, exon 1 of 13)	non-coding (NR_146334, exon 1 of 13)	656	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
106465	chr18	14127921	14128180	+	0	NA	intron (NM_145287, intron 1 of 2)	AluY|SINE|Alu	4385	NM_145287	162655		NM_145287	ENSG00000175322	ZNF519	HsT2362	zinc finger protein 519	protein-coding
155167	chr22	37688851	37689330	+	0	NA	intron (NM_024313, intron 4 of 5)	intron (NM_024313, intron 4 of 5)	2747	NM_024313	79159		NM_024313	ENSG00000273899	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
165775	chr3	105775501	105776300	+	0	NA	intron (NR_135806, intron 4 of 20)	L2c|LINE|L2	91691	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
187296	chr5	141597321	141598030	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	21325	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
56565	chr12	117098251	117098700	+	0	NA	promoter-TSS (NR_120464)	promoter-TSS (NR_120464)	941	NR_031766	54997		NM_017899	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
114039	chr19	10957351	10957650	+	0	NA	Intergenic	AluSp|SINE|Alu	-3530	NM_001374457	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
80571	chr16	2855971	2856700	+	0	NA	intron (NM_022119, intron 2 of 5)	intron (NM_022119, intron 2 of 5)	1835	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
93648	chr17	19185051	19185430	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2776	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
75708	chr15	68060321	68060580	+	0	NA	intron (NM_001320687, intron 2 of 14)	AluSg|SINE|Alu	5874	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
41124	chr11	65564671	65565410	+	0	NA	Intergenic	Intergenic	5373	NR_038923	254100		NR_038923		ZNRD2-DT	SSSCA1-AS1|ZNRD2-AS1	ZNRD2 divergent transcript	ncRNA
172440	chr4	1895851	1896150	+	0	NA	intron (NM_007331, intron 2 of 10)	intron (NM_007331, intron 2 of 10)	3218	NM_133330	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
123563	chr19	54435551	54435830	+	0	NA	intron (NM_001005367, intron 11 of 12).4	intron (NM_001005367, intron 11 of 12).4	13348	NR_126418	104355426		NR_126418	ENSG00000226696	LENG8-AS1	-	LENG8 antisense RNA 1	ncRNA
138363	chr2	203945171	203945950	+	0	NA	intron (NM_012092, intron 1 of 4)	Tigger3a|DNA|TcMar-Tigger	8797	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
201364	chr6	144697301	144697500	+	0	NA	intron (NM_001375323, intron 2 of 24)	intron (NM_001375323, intron 2 of 24)	114252	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
151945	chr22	19119451	19119550	+	0	NA	intron (NM_001184781, intron 1 of 9)	AluSx|SINE|Alu	2912	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
188417	chr5	154191771	154192430	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	1367	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
120857	chr19	45526021	45526580	+	0	NA	3' UTR (NM_003370, exon 13 of 13)	3' UTR (NM_003370, exon 13 of 13)	18821	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
143997	chr20	32993501	32993900	+	0	NA	intron (NM_080675, intron 8 of 12)	MER5A|DNA|hAT-Charlie	10733	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
56590	chr12	117875801	117876280	+	0	NA	intron (NM_173598, intron 1 of 19)	intron (NM_173598, intron 1 of 19)	92950	NM_173598	283455		NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
49409	chr12	22626401	22628050	+	0	NA	intron (NM_001039481, intron 1 of 2)	intron (NM_001039481, intron 1 of 2)	2054	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
188591	chr5	157169021	157169280	+	0	NA	Intergenic	Intergenic	-2886	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
214932	chr7	151624601	151624880	+	0	NA	intron (NM_016203, intron 5 of 15)	intron (NM_016203, intron 5 of 15)	7518	NM_024429	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
198255	chr6	99434921	99435330	+	0	NA	non-coding (NR_144346, exon 17 of 17)	non-coding (NR_144346, exon 17 of 17)	-9780	NM_001322413	25957		NM_015491	ENSG00000132424	PNISR	C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2	PNN interacting serine and arginine rich protein	protein-coding
75342	chr15	65400251	65400350	+	0	NA	intron (NM_020962, intron 5 of 19)	L2b|LINE|L2	-22298	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
98938	chr17	48628571	48629280	+	0	NA	Intergenic	Intergenic	-2567	NM_024017	3219		NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
68177	chr14	76050821	76051100	+	0	NA	intron (NR_045664, intron 3 of 7)	intron (NR_045664, intron 3 of 7)	65197	NM_001255995	112752		NM_052873	ENSG00000119650	IFT43	C14orf179|CED3|RP81|SRTD18	intraflagellar transport 43	protein-coding
32542	chr10	103195701	103196100	+	0	NA	Intergenic	AluSg|SINE|Alu	-2594	NM_001351197	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
202311	chr6	157272551	157272650	+	0	NA	Intergenic	MIRc|SINE|MIR	50919	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
228312	chr9	98163821	98164550	+	0	NA	intron (NM_052820, intron 1 of 11)	intron (NM_052820, intron 1 of 11)	8707	NM_003389	7464		NM_003389	ENSG00000106789	CORO2A	CLIPINB|IR10|WDR2	coronin 2A	protein-coding
233512	chrM	2201	3000	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	4914	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
31146	chr10	89861871	89862100	+	0	NA	intron (NR_149080, intron 1 of 1)	intron (NR_149080, intron 1 of 1)	8079	NR_149080	105378425		NR_149079	ENSG00000280560	LINC01374	TCONS_00018278	long intergenic non-protein coding RNA 1374	ncRNA
236768	chrX	78956401	78957250	+	0	NA	intron (NM_014499, intron 3 of 3)	MIRb|SINE|MIR	11434	NM_001324225	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
167426	chr3	129026501	129027830	+	0	NA	intron (NM_024768, intron 2 of 7)	CpG	-23163	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
211115	chr7	102516881	102519080	+	0	NA	promoter-TSS (NM_001277335)	promoter-TSS (NM_001277335)	-203	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
34171	chr10	128095271	128096380	+	0	NA	TTS (NM_002417)	TTS (NM_002417)	30598	NM_002417	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
195482	chr6	37102451	37103580	+	0	NA	Intergenic	Intergenic	-67137	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
1579	chr1	3592251	3592550	+	0	NA	intron (NM_001409, intron 3 of 36)	intron (NM_001409, intron 3 of 36)	19108	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
106572	chr18	21742571	21742930	+	0	NA	intron (NM_020774, intron 1 of 20)	intron (NM_020774, intron 1 of 20)	1958	NM_020774	57534		NM_020774	ENSG00000101752	MIB1	DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6	MIB E3 ubiquitin protein ligase 1	protein-coding
16297	chr1	154170651	154171350	+	0	NA	intron (NM_153649, intron 5 of 7)	intron (NM_153649, intron 5 of 7)	7204	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
40274	chr11	63832171	63832750	+	0	NA	Intergenic	Intergenic	-6468	NM_001039469	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
162878	chr3	49375801	49376000	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluSx|SINE|Alu	-17300	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
98289	chr17	46223771	46223930	+	0	NA	intron (NM_001193465, intron 1 of 15)	intron (NM_001193465, intron 1 of 15)	1517	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
18353	chr1	161224371	161224530	+	0	NA	promoter-TSS (NM_001643)	promoter-TSS (NM_001643)	-822	NM_001643	336		NM_001643	ENSG00000158874	APOA2	Apo-AII|ApoA-II|apoAII	apolipoprotein A2	protein-coding
92687	chr17	13031651	13032200	+	0	NA	Intergenic	Intergenic	-13861	NM_001165962	60528		NM_018127	ENSG00000006744	ELAC2	COXPD17|ELC2|HPC2	elaC ribonuclease Z 2	protein-coding
34878	chr11	363071	363730	+	0	NA	Intergenic	Intergenic	-6099	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
218185	chr8	41993221	41993480	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-58400	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
77062	chr15	78881151	78881800	+	0	NA	intron (NM_001265604, intron 3 of 11)	AluSq2|SINE|Alu	8486	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
129579	chr2	70044551	70044850	+	0	NA	intron (NR_033872, intron 6 of 10)	AluSp|SINE|Alu	42315	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
221382	chr8	123393051	123393150	+	0	NA	intron (NM_014109, intron 1 of 27)	AluY|SINE|Alu	3347	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
32054	chr10	101060501	101061810	+	0	NA	promoter-TSS (NM_030929)	promoter-TSS (NM_030929)	-834	NR_135067	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
78186	chr15	90561101	90561300	+	0	NA	intron (NM_001042574, intron 2 of 14)	MIR|SINE|MIR	31277	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
58716	chr12	132574371	132574730	+	0	NA	exon (NM_001142641, exon 12 of 17)	exon (NM_001142641, exon 12 of 17)	-7447	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
74720	chr15	63156721	63158300	+	0	NA	promoter-TSS (NM_015920)	promoter-TSS (NM_015920)	-33	NM_015920	51065		NM_015920	ENSG00000185088	RPS27L	-	ribosomal protein S27 like	protein-coding
15373	chr1	150146821	150147480	+	0	NA	Intergenic	Intergenic	-2284	NM_001304722	51177		NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding
67478	chr14	70911151	70911550	+	0	NA	intron (NM_014982, intron 1 of 35)	intron (NM_014982, intron 1 of 35)	3891	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
19759	chr1	182029071	182030550	+	0	NA	Intergenic	CpG	31902	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
225271	chr9	34403571	34404130	+	0	NA	intron (NM_001184943, intron 2 of 5)	intron (NM_001184943, intron 2 of 5)	-6040	NM_032596	84688		NM_032596	ENSG00000164972	SPMIP6	C9orf24|CBE1|NYD-SP22|SMRP1|bA573M23.4	sperm microtubule inner protein 6	protein-coding
13944	chr1	120340671	120341770	+	0	NA	Intergenic	CpG	-73807	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
111781	chr19	4436601	4437000	+	0	NA	intron (NM_005483, intron 13 of 14)	intron (NM_005483, intron 13 of 14)	-9178	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
168112	chr3	138689001	138689250	+	0	NA	intron (NM_006219, intron 15 of 23)	AluSx3|SINE|Alu	18496	NM_001256045	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
69253	chr14	92952971	92953280	+	0	NA	intron (NM_014216, intron 8 of 10).2	intron (NM_014216, intron 8 of 10).2	29975	NM_001301690	1113		NM_001275	ENSG00000100604	CHGA	CGA|PHE5|PHES	chromogranin A	protein-coding
236796	chrX	79148651	79149000	+	0	NA	intron (NM_032553, intron 1 of 2)	intron (NM_032553, intron 1 of 2)	4137	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
79057	chr16	136321	136600	+	0	NA	intron (NM_001243249, intron 1 of 11)	AluSc5|SINE|Alu	2213	NM_001077350	8131		NM_012075	ENSG00000103148	NPRL3	C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11	NPR3 like, GATOR1 complex subunit	protein-coding
102000	chr17	74769701	74769900	+	0	NA	TTS (NR_130954)	TTS (NR_130954)	6545	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
222554	chr8	140607771	140608180	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	27658	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
231263	chr9	130002421	130002880	+	0	NA	intron (NM_001363755, intron 1 of 15)	MSTB1|LTR|ERVL-MaLR	40539	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
212501	chr7	128655151	128655450	+	0	NA	non-coding (NR_024368, exon 5 of 5)	non-coding (NR_024368, exon 5 of 5)	14059	NR_024368	402483		NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
148790	chr21	8226271	8227790	+	0	NA	intron (NR_038958, intron 6 of 6)	intron (NR_038958, intron 6 of 6)	13142	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
108264	chr18	63253771	63254350	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	65709	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
15425	chr1	150266071	150266580	+	0	NA	non-coding (NR_045033, exon 6 of 6)	non-coding (NR_045033, exon 6 of 6)	2691	NM_001077628	51107		NM_016022	ENSG00000117362	APH1A	6530402N02Rik|APH-1|APH-1A|CGI-78	aph-1 homolog A, gamma-secretase subunit	protein-coding
7446	chr1	33035071	33035430	+	0	NA	intron (NM_001319140, intron 1 of 6)	intron (NM_001319140, intron 1 of 6)	1633	NM_001625	204		NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
158460	chr22	50643671	50644430	+	0	NA	Intergenic	LTR8|LTR|ERV1	-15898	NM_001085427	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
161182	chr3	39130051	39130650	+	0	NA	exon (NM_001105513, exon 16 of 28)	exon (NM_001105513, exon 16 of 28)	-7856	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
173101	chr4	6330221	6330480	+	0	NA	intron (NM_001206995, intron 8 of 9)	L2a|LINE|L2	51518	NM_181876	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
148461	chr20	64032601	64032880	+	0	NA	promoter-TSS (NM_001348090)	promoter-TSS (NM_001348090)	-987	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
234494	chrX	18953971	18954130	+	0	NA	intron (NM_000292, intron 2 of 32)	intron (NM_000292, intron 2 of 32)	30064	NM_000292	5256		NM_000292	ENSG00000044446	PHKA2	GSD9A|PHK|PYK|PYKL|XLG|XLG2	phosphorylase kinase regulatory subunit alpha 2	protein-coding
66088	chr14	59444221	59444500	+	0	NA	Intergenic	Intergenic	21020	NM_022571	64582		NM_022571	ENSG00000181619	GPR135	HUMNPIIY20	G protein-coupled receptor 135	protein-coding
158791	chr3	9647471	9647830	+	0	NA	Intergenic	AluJo|SINE|Alu	-1855	NM_001077526	64419		NM_022485	ENSG00000163719	MTMR14	C3orf29	myotubularin related protein 14	protein-coding
118711	chr19	38223751	38224880	+	0	NA	promoter-TSS (NM_004647)	promoter-TSS (NM_004647)	-93	NM_004647	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
238962	chrX	155148971	155149230	+	0	NA	Intergenic	L2c|LINE|L2	-47907	NM_001303544	7411		NM_003372	ENSG00000155959	VBP1	HIBBJ46|PFD3|PFDN3|VBP-1	VHL binding protein 1	protein-coding
20764	chr1	201005171	201005530	+	0	NA	exon (NM_001252103, exon 5 of 34)	exon (NM_001252103, exon 5 of 34)	18364	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
185110	chr5	119275671	119276380	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	7266	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
65157	chr14	45389501	45389900	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-136498	NM_018353	55320		NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
96504	chr17	40314371	40315030	+	0	NA	intron (NM_000964, intron 1 of 8)	intron (NM_000964, intron 1 of 8)	-3545	NM_001145301	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
39822	chr11	62034451	62034950	+	0	NA	Intergenic	Intergenic	-67066	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
114333	chr19	12139171	12139330	+	0	NA	intron (NM_021143, intron 1 of 3)	MER51B|LTR|ERV1	1100	NM_001203250	7568		NM_021143	ENSG00000132010	ZNF20	KOX13	zinc finger protein 20	protein-coding
128282	chr2	54593551	54594350	+	0	NA	intron (NM_178313, intron 1 of 30)	AluSg|SINE|Alu	35556	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
102281	chr17	75315501	75315700	+	0	NA	Intergenic	Intergenic	-26151	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
103328	chr17	77965621	77966080	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-38387	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
39993	chr11	62626201	62626580	+	0	NA	exon (NM_001278194, exon 21 of 23)	exon (NM_001278194, exon 21 of 23)	-4404	NM_001288723	26229		NM_012200	ENSG00000149541	B3GAT3	GLCATI|JDSCD|glcUAT-I	beta-1,3-glucuronyltransferase 3	protein-coding
174477	chr4	39829751	39830050	+	0	NA	intron (NM_001100399, intron 32 of 32)	AluY|SINE|Alu	131764	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
14190	chr1	121854971	121855430	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	336088	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
187268	chr5	141512001	141513430	+	0	NA	3' UTR (NM_018926, exon 4 of 4)	3' UTR (NM_018926, exon 4 of 4)	23474	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
137606	chr2	197295171	197295430	+	0	NA	intron (NR_046837, intron 5 of 5)	MER58B|DNA|hAT-Charlie	7219	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
141808	chr20	323351	323450	+	0	NA	intron (NR_109990, intron 1 of 2)	MamTip1|DNA|hAT-Tip100	1852	NR_109990	100507459		NR_109990	ENSG00000225377	NRSN2-AS1	-	NRSN2 antisense RNA 1	ncRNA
196454	chr6	43509511	43511480	+	0	NA	promoter-TSS (NM_001012974)	promoter-TSS (NM_001012974)	-149	NM_001271882	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
28747	chr10	61989871	61990430	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	-59207	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
18634	chr1	166841021	166841280	+	0	NA	intron (NM_001314014, intron 2 of 3)	intron (NM_001314014, intron 2 of 3)	1675	NM_001314014	57645		NM_017542	ENSG00000143157	POGK	BASS2|KRBOX2|LST003	pogo transposable element derived with KRAB domain	protein-coding
6902	chr1	31615321	31615650	+	0	NA	Intergenic	Intergenic	-2204	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
124053	chr19	55584801	55585000	+	0	NA	Intergenic	AluJb|SINE|Alu	-4052	NM_152600	163033		NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding
128913	chr2	64277301	64277500	+	0	NA	Intergenic	Intergenic	48999	NR_120420	100507006		NR_120420		LOC100507006	-	uncharacterized LOC100507006	ncRNA
125455	chr2	12169371	12169980	+	0	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	-29455	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
237100	chrX	104113301	104113830	+	0	NA	non-coding (NR_026694, exon 3 of 4)	non-coding (NR_026694, exon 3 of 4)	1042	NM_001143978	644353		NM_001143978	ENSG00000166707	ZCCHC18	PNMA7B|SIZN2	zinc finger CCHC-type containing 18	protein-coding
157038	chr22	42568251	42568350	+	0	NA	intron (NM_014509, intron 9 of 11)	AluJo|SINE|Alu	13711	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
53241	chr12	62469821	62470080	+	0	NA	intron (NM_015026, intron 1 of 34)	AluJb|SINE|Alu	3124	NM_015026	23041		NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
121212	chr19	46613371	46613530	+	0	NA	Intergenic	AluSx1|SINE|Alu	11378	NM_001329922	808		NM_005184	ENSG00000160014	CALM3	CALM|CAM1|CAM2|CAMB|CPVT6|CaM|CaMIII|HEL-S-72|LQT16|PHKD|PHKD3	calmodulin 3	protein-coding
194756	chr6	33975751	33976250	+	0	NA	Intergenic	Intergenic	24051	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275|mir-1275	microRNA 1275	ncRNA
97155	chr17	42575371	42575530	+	0	NA	intron (NM_001256016, intron 3 of 8)	MER58A|DNA|hAT-Charlie	2266	NR_045671	29893		NM_013290	ENSG00000131470	PSMC3IP	GT198|HOP2|HUMGT198A|ODG3|TBPIP	PSMC3 interacting protein	protein-coding
209406	chr7	76340871	76341530	+	0	NA	intron (NM_012479, intron 1 of 1)	AluSz|SINE|Alu	17791	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
80620	chr16	2973001	2973400	+	0	NA	exon (NM_001258451, exon 8 of 9)	exon (NM_001258451, exon 8 of 9)	3852	NM_001284511	124222		NM_152341	ENSG00000162073	PAQR4	-	progestin and adipoQ receptor family member 4	protein-coding
14165	chr1	121365671	121366130	+	0	NA	intron (NM_001271872, intron 5 of 9)	intron (NM_001271872, intron 5 of 9)	32005	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
7512	chr1	33455721	33456130	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	-16720	NM_001377378	7579		NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
142484	chr20	4665651	4666480	+	0	NA	Intergenic	LTR8|LTR|ERV1	-20391	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
145813	chr20	45445921	45446280	+	0	NA	intron (NR_159957, intron 2 of 3)	L2a|LINE|L2	18678	NR_159957	105372631		NR_159957		LOC105372631	-	uncharacterized LOC105372631	ncRNA
193236	chr6	29923901	29924100	+	0	NA	TTS (NR_001317)	TTS (NR_001317)	3215	NR_001317	80868		NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B	ncRNA
121983	chr19	48501121	48504100	+	0	NA	intron (NM_001080434, intron 7 of 15)	intron (NM_001080434, intron 7 of 15)	10579	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
137956	chr2	201138601	201138800	+	0	NA	3' UTR (NM_001308043, exon 5 of 5)	3' UTR (NM_001308043, exon 5 of 5)	-1575	NM_001202515	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
138069	chr2	201782821	201783080	+	0	NA	Intergenic	MER4D|LTR|ERV1	-2017	NM_020919	57679		NM_020919	ENSG00000003393	ALS2	ALS2CR6|ALSJ|IAHSP|PLSJ	alsin Rho guanine nucleotide exchange factor ALS2	protein-coding
208067	chr7	56083301	56083700	+	0	NA	intron (NR_047689, intron 4 of 8)	intron (NR_047689, intron 4 of 8)	9452	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
223637	chr8	144336521	144337000	+	0	NA	promoter-TSS (NM_031309)	promoter-TSS (NM_031309)	-278	NM_031309	83482		NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding
120678	chr19	45118171	45118330	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	25071	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
116691	chr19	18424421	18424900	+	0	NA	intron (NM_032627, intron 1 of 17)	L2a|LINE|L2	5262	NM_032627	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
230583	chr9	128561201	128561780	+	0	NA	intron (NM_001375312, intron 2 of 57)	AluYf1|SINE|Alu	8903	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
156611	chr22	41566421	41566830	+	0	NA	intron (NM_014460, intron 1 of 3)	AluSx1|SINE|Alu	5615	NM_014460	27254		NM_014460	ENSG00000172346	CSDC2	PIPPIN|dJ347H13.2	cold shock domain containing C2	protein-coding
74838	chr15	63506471	63507280	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	2282	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
214164	chr7	144808101	144808330	+	0	NA	intron (NR_146934, intron 1 of 6)	intron (NR_146934, intron 1 of 6)	27725	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
129546	chr2	69789851	69790480	+	0	NA	intron (NR_164155, intron 2 of 2)	LTR19C|LTR|ERV1	8833	NR_164155	107985770		NR_164153	ENSG00000288869	SMANTIS	ANXA4-AS|n342419	SMARCA4 interacting SWI/SNF chromatin remodeling complex scaffold lncRNA	ncRNA
231686	chr9	131705551	131706180	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	3977	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
227653	chr9	92967171	92967630	+	0	NA	intron (NM_001369951, intron 1 of 17)	L1MB3|LINE|L1	3393	NM_001369951	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
24798	chr10	35701	36030	+	0	NA	Intergenic	L1PA3|LINE|L1	13431	NM_177987	347688		NM_177987	ENSG00000261456	TUBB8	OOMD|OOMD2|OZEMA2|bA631M21.2	tubulin beta 8 class VIII	protein-coding
91823	chr17	7174001	7175050	+	0	NA	intron (NM_001671, intron 5 of 8)	CpG-10596	4845	NM_001671	432		NM_001671	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
131180	chr2	94586071	94586250	+	0	NA	intron (NR_024443, intron 1 of 3)	intron (NR_024443, intron 1 of 3)	1023	NR_024443	100133920		NR_024443	ENSG00000290941	LOC100133920	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
45602	chr11	118899051	118899500	+	0	NA	non-coding (NR_165445, exon 7 of 7)	non-coding (NR_165445, exon 7 of 7)	5883	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
210752	chr7	100678571	100679530	+	0	NA	TTS (NM_001375766)	TTS (NM_001375766)	5310	NM_005273	2783		NM_005273	ENSG00000172354	GNB2	HG2C1|SSS4|SSS4; NEDHYDF	G protein subunit beta 2	protein-coding
234006	chrX	3651071	3651650	+	0	NA	intron (NM_005044, intron 3 of 8)	intron (NM_005044, intron 3 of 8)	-8127	NR_046643	100873944		NR_046643	ENSG00000236188	PRKX-AS1	-	PRKX antisense RNA 1	ncRNA
91992	chr17	7434771	7436300	+	0	NA	promoter-TSS (NM_001320444)	promoter-TSS (NM_001320444)	62	NM_001320444	284114		NM_178518	ENSG00000181284	TMEM102	CBAP|D2B	transmembrane protein 102	protein-coding
74131	chr15	55231421	55231680	+	0	NA	intron (NM_183236, intron 3 of 6)	L1MB7|LINE|L1	-34609	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
49521	chr12	25429721	25430000	+	0	NA	Intergenic	AluSc|SINE|Alu	123423	NM_001256266	160492		NM_152590	ENSG00000152936	LMNTD1	IFLTD1|LMNARS1|PAS1C1	lamin tail domain containing 1	protein-coding
78208	chr15	90595471	90595800	+	0	NA	intron (NM_001042574, intron 3 of 14)	intron (NM_001042574, intron 3 of 14)	-64599	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
126994	chr2	36793021	36793280	+	0	NA	intron (NM_053276, intron 12 of 15)	intron (NM_053276, intron 12 of 15)	96443	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
100514	chr17	62098801	62099000	+	0	NA	Intergenic	L2|LINE|L2	-33622	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
195995	chr6	41993621	41994080	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx3|SINE|Alu	-52002	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
152296	chr22	20318501	20318700	+	0	NA	intron (NM_033257, intron 2 of 4)	intron (NM_033257, intron 2 of 4)	1460	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
112216	chr19	5698171	5698780	+	0	NA	intron (NR_076392, intron 11 of 18)	intron (NR_076392, intron 11 of 18)	8180	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
163534	chr3	51665951	51666250	+	0	NA	3' UTR (NM_001322257, exon 22 of 22)	3' UTR (NM_001322257, exon 22 of 22)	-5075	NM_001129884	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
239299	chrY	14834101	14834330	+	0	NA	intron (NM_001365590, intron 7 of 7)	intron (NM_001365590, intron 7 of 7)	-30182	NR_046504	100874056		NR_046504	ENSG00000228787	NLGN4Y-AS1	NLGN4Y-AS|NLGN4YAS	NLGN4Y antisense RNA 1	ncRNA
227903	chr9	94065451	94065780	+	0	NA	intron (NM_177995, intron 2 of 9)	intron (NM_177995, intron 2 of 9)	-18814	NM_152422	138639		NM_152422	ENSG00000158079	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
109297	chr19	559351	560050	+	0	NA	Intergenic	L1MB7|LINE|L1	-11583	NM_198591	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
138110	chr2	202277971	202279450	+	0	NA	TTS (NR_145774)	TTS (NR_145774)	597	NR_145774	109616995		NR_145774	ENSG00000212309	SNORD70B	-	small nucleolar RNA, C/D box 70B	snoRNA
146610	chr20	50149501	50150550	+	0	NA	intron (NM_199129, intron 1 of 5)	intron (NM_199129, intron 1 of 5)	3698	NM_001162505	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
196040	chr6	42043551	42044630	+	0	NA	intron (NM_001287434, intron 1 of 4)	intron (NM_001287434, intron 1 of 4)	4804	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
238616	chrX	153945571	153945730	+	0	NA	Intergenic	AluSg|SINE|Alu	-1007	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
182974	chr5	71533471	71533880	+	0	NA	intron (NM_018429, intron 26 of 38).3	AluJr|SINE|Alu	-53665	NM_001363147	64087		NM_022132	ENSG00000131844	MCCC2	MCCB|MCCCbeta	methylcrotonyl-CoA carboxylase subunit 2	protein-coding
26513	chr10	20609921	20610000	+	0	NA	Intergenic	(AACTG)n|Simple_repeat|Simple_repeat	57990	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	ncRNA
130815	chr2	87056321	87057080	+	0	NA	intron (NR_026846, intron 1 of 10)	MER1B|DNA|hAT-Charlie	19713	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
108786	chr18	77251551	77251930	+	0	NA	intron (NM_001480, intron 1 of 2)	CpG	1892	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
69773	chr14	99173821	99174500	+	0	NA	exon (NM_138576, exon 4 of 4)	exon (NM_138576, exon 4 of 4)	98037	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
65359	chr14	50521351	50522480	+	0	NA	intron (NM_198794, intron 2 of 31)	intron (NM_198794, intron 2 of 31)	10654	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
61351	chr13	50914721	50915180	+	0	NA	intron (NM_001142279, intron 1 of 9)	intron (NM_001142279, intron 1 of 9)	-4238	NR_046552	100874255		NR_046552		RNASEH2B-AS1	-	RNASEH2B antisense RNA 1	ncRNA
55216	chr12	101801021	101801280	+	0	NA	intron (NM_024312, intron 1 of 20)	AluJr|SINE|Alu	29809	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
227754	chr9	93099771	93100600	+	0	NA	intron (NR_160511, intron 1 of 4)	intron (NR_160511, intron 1 of 4)	3968	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
217701	chr8	30131951	30132450	+	0	NA	exon (NM_001100916, exon 3 of 3)	exon (NM_001100916, exon 3 of 3)	12465	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
209094	chr7	74874771	74875330	+	0	NA	Intergenic	Intergenic	15562	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
95789	chr17	38711051	38711650	+	0	NA	intron (NM_005937, intron 6 of 19)	intron (NM_005937, intron 6 of 19)	6077	NM_005937	4302		NM_005937	ENSG00000275023	MLLT6	AF17	MLLT6, PHD finger containing	protein-coding
91781	chr17	7008871	7009350	+	0	NA	intron (NM_000697, intron 11 of 13)	AluY|SINE|Alu	3224	NR_040089	100506713		NR_040089	ENSG00000215067	ALOX12-AS1	-	ALOX12 antisense RNA 1	ncRNA
219868	chr8	85179471	85179700	+	0	NA	intron (NM_001951, intron 1 of 7)	(AT)n|Simple_repeat|Simple_repeat	2431	NM_001951	1875		NM_001951	ENSG00000133740	E2F5	E2F-5	E2F transcription factor 5	protein-coding
63493	chr13	114199451	114200430	+	0	NA	Intergenic	CpG	-34905	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
21996	chr1	209765901	209766500	+	0	NA	intron (NM_025228, intron 8 of 16)	intron (NM_025228, intron 8 of 16)	-2365	NM_001287754	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
6617	chr1	28884601	28885780	+	0	NA	Intergenic	Intergenic	-1901	NM_203342	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
19279	chr1	172742601	172743050	+	0	NA	Intergenic	Intergenic	83722	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
178248	chr4	143515821	143516730	+	0	NA	intron (NM_003601, intron 1 of 23)	intron (NM_003601, intron 1 of 23)	-1438	NR_104027	100128055		NR_104027	ENSG00000245112	SMARCA5-AS1	-	SMARCA5 antisense RNA 1	ncRNA
162657	chr3	48902271	48902850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3678	NM_000387	788		NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	solute carrier family 25 member 20	protein-coding
89224	chr16	88628151	88628250	+	0	NA	intron (NM_144604, intron 15 of 17)	intron (NM_144604, intron 15 of 17)	-10372	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
226144	chr9	63448901	63449450	+	0	NA	Intergenic	CpG	114637	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
1829	chr1	6248301	6248500	+	0	NA	3' UTR (NM_207370, exon 6 of 6)	3' UTR (NM_207370, exon 6 of 6)	4221	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
101716	chr17	68519101	68519400	+	0	NA	intron (NM_212471, intron 2 of 10)	THE1C|LTR|ERVL-MaLR	3856	NM_001276290	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
149514	chr21	32731251	32732300	+	0	NA	intron (NR_038879, intron 1 of 3)	intron (NR_038879, intron 1 of 3)	3661	NR_038880	100506215		NR_038879	ENSG00000238197	PAXBP1-AS1	GCFC1-AS1	PAXBP1 antisense RNA 1	ncRNA
185069	chr5	116145501	116145730	+	0	NA	intron (NM_016144, intron 5 of 6)	THE1C|LTR|ERVL-MaLR	60153	NM_001308080	51397		NM_016144	ENSG00000145781	COMMD10	PTD002	COMM domain containing 10	protein-coding
179972	chr5	853721	853980	+	0	NA	Intergenic	Intergenic	-2864	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
118442	chr19	35856501	35857500	+	0	NA	promoter-TSS (NM_199180)	promoter-TSS (NM_199180)	89	NM_001329530	84063		NM_032123	ENSG00000126259	KIRREL2	FILTRIN|NEPH3|NLG1	kirre like nephrin family adhesion molecule 2	protein-coding
140297	chr2	232420651	232421250	+	0	NA	Intergenic	CpG	14106	NM_031313	251		NM_031313	ENSG00000163286	ALPG	ALPPL|ALPPL2|GCAP	alkaline phosphatase, germ cell	protein-coding
10404	chr1	65215651	65215950	+	0	NA	intron (NM_203464, intron 3 of 5)	intron (NM_203464, intron 3 of 5)	-48894	NM_001256865	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
53958	chr12	71924621	71924880	+	0	NA	non-coding (NR_027449, exon 16 of 16)	non-coding (NR_027449, exon 16 of 16)	-14095	NM_173353	121278		NM_173353	ENSG00000139287	TPH2	ADHD7|NTPH	tryptophan hydroxylase 2	protein-coding
162907	chr3	49404421	49404680	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluSx3|SINE|Alu	7426	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
204315	chr7	2701521	2701800	+	0	NA	intron (NM_001321766, intron 2 of 6)	intron (NM_001321766, intron 2 of 6)	13458	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
155239	chr22	37933021	37933280	+	0	NA	intron (NM_033386, intron 13 of 15)	intron (NM_033386, intron 13 of 15)	20451	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
202817	chr6	159686701	159686930	+	0	NA	intron (NM_001024466, intron 2 of 4)	intron (NM_001024466, intron 2 of 4)	6426	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
50673	chr12	48847401	48847600	+	0	NA	intron (NM_004818, intron 1 of 16)	AluSc|SINE|Alu	4663	NM_004818	9416		NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
132819	chr2	110563221	110564130	+	0	NA	intron (NM_032260, intron 5 of 19).2	L2|LINE|L2	13225	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
166344	chr3	112971351	112971850	+	0	NA	intron (NM_138939, intron 1 of 3)	intron (NM_138939, intron 1 of 3)	3503	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
60330	chr13	40669771	40669930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3209	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
57037	chr12	120727051	120727430	+	0	NA	intron (NM_001302554, intron 2 of 9)	intron (NM_001302554, intron 2 of 9)	1414	NM_001302554	35		NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	acyl-CoA dehydrogenase short chain	protein-coding
189052	chr5	170070801	170071130	+	0	NA	intron (NR_156756, intron 47 of 52)	intron (NR_156756, intron 47 of 52)	-34932	NM_144769	2299		NM_012188	ENSG00000168269	FOXI1	FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3	forkhead box I1	protein-coding
140122	chr2	231526551	231526650	+	0	NA	intron (NM_006056, intron 2 of 2)	intron (NM_006056, intron 2 of 2)	3845	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
64182	chr14	22979871	22980030	+	0	NA	intron (NM_001289097, intron 1 of 1)	intron (NM_001289097, intron 1 of 1)	2601	NM_001289097	84962		NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
6939	chr1	31738951	31740000	+	0	NA	exon (NM_001294335, exon 15 of 33)	exon (NM_001294335, exon 15 of 33)	19260	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
219896	chr8	85714721	85715330	+	0	NA	non-coding (NR_003594, exon 1 of 1).3	non-coding (NR_003594, exon 1 of 1).3	181	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
42148	chr11	67667421	67667680	+	0	NA	5' UTR (NM_001354345, exon 3 of 11)	5' UTR (NM_001354345, exon 3 of 11)	7181	NM_001354345	222		NM_000695	ENSG00000132746	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family member B2	protein-coding
8299	chr1	40050821	40051080	+	0	NA	intron (NM_001350484, intron 2 of 13)	intron (NM_001350484, intron 2 of 13)	9924	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
68379	chr14	78566501	78566750	+	0	NA	intron (NM_004796, intron 1 of 16)	intron (NM_004796, intron 1 of 16)	162906	NM_004796	9369		NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
135417	chr2	161136301	161137280	+	0	NA	promoter-TSS (NM_004180)	promoter-TSS (NM_004180)	-165	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
48085	chr12	7188201	7188900	+	0	NA	promoter-TSS (NM_001131026)	promoter-TSS (NM_001131026)	-103	NM_001351124	5830		NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
205419	chr7	16648501	16649180	+	0	NA	intron (NM_001159767, intron 1 of 11)	intron (NM_001159767, intron 1 of 11)	2659	NM_014038	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
82417	chr16	16271651	16271900	+	0	NA	intron (NM_173614, intron 18 of 30)	intron (NM_173614, intron 18 of 30)	-28384	NR_036145	100423006		NR_036145	ENSG00000266454	MIR3179-3	-	microRNA 3179-3	ncRNA
185363	chr5	127517051	127518480	+	0	NA	5' UTR (NM_130809, exon 1 of 9)	5' UTR (NM_130809, exon 1 of 9)	125	NM_001286808	133619		NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
42841	chr11	73139521	73139830	+	0	NA	intron (NM_014824, intron 2 of 19)	intron (NM_014824, intron 2 of 19)	2643	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
212386	chr7	128057751	128058200	+	0	NA	intron (NM_014390, intron 16 of 23)	intron (NM_014390, intron 16 of 23)	-23886	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
61896	chr13	77318751	77319250	+	0	NA	intron (NM_015057, intron 1 of 82)	MER119|DNA|hAT-Charlie	8094	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
190936	chr6	2887751	2888050	+	0	NA	3' UTR (NM_004155, exon 7 of 7)	3' UTR (NM_004155, exon 7 of 7)	3912	NR_110841	101927730		NR_110841		SERPINB9-AS1	-	SERPINB9 antisense RNA 1	ncRNA
40754	chr11	64840421	64840680	+	0	NA	intron (NM_017525, intron 4 of 36)	intron (NM_017525, intron 4 of 36)	4103	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
127302	chr2	38755871	38756650	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-4766	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
214505	chr7	150464671	150465700	+	0	NA	intron (NM_175571, intron 1 of 4)	intron (NM_175571, intron 1 of 4)	14555	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
23422	chr1	228393371	228393880	+	0	NA	TTS (NM_145214)	TTS (NM_145214)	3484	NR_106800	102465444		NR_106800	ENSG00000284311	MIR6742	hsa-mir-6742	microRNA 6742	ncRNA
135591	chr2	166610671	166610830	+	0	NA	Intergenic	Intergenic	-116501	NM_002976	6332		NM_002976	ENSG00000136546	SCN7A	NaG|Nav2.1|Nav2.2|SCN6A	sodium voltage-gated channel alpha subunit 7	protein-coding
172054	chr4	1018071	1018230	+	0	NA	intron (NM_001370296, intron 2 of 6)	intron (NM_001370296, intron 2 of 6)	5686	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
29143	chr10	68600001	68600900	+	0	NA	intron (NM_030625, intron 2 of 11)	intron (NM_030625, intron 2 of 11)	40113	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
62268	chr13	98573721	98573980	+	0	NA	intron (NM_001286649, intron 1 of 9)	MIRc|SINE|MIR	3257	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
148338	chr20	63795021	63795480	+	0	NA	intron (NM_001369741, intron 1 of 4)	intron (NM_001369741, intron 1 of 4)	10253	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
141977	chr20	1346201	1346600	+	0	NA	intron (NR_040047, intron 1 of 2)	L1MC2|LINE|L1	-17261	NM_080489	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
17440	chr1	156676601	156677380	+	0	NA	exon (NM_006617, exon 1 of 4)	exon (NM_006617, exon 1 of 4)	417	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
49670	chr12	29390351	29390900	+	0	NA	intron (NR_073172, intron 1 of 1)	intron (NR_073172, intron 1 of 1)	1331	NR_073170	101055625		NR_073170	ENSG00000257599	OVCH1-AS1	-	OVCH1 antisense RNA 1	ncRNA
2674	chr1	10521821	10522080	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	47000	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
109122	chr18	80136421	80136750	+	0	NA	exon (NM_014913, exon 4 of 4)	exon (NM_014913, exon 4 of 4)	-11339	NR_028339	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
217639	chr8	30065951	30066450	+	0	NA	intron (NM_016127, intron 4 of 5)	intron (NM_016127, intron 4 of 5)	16864	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
89712	chr16	89409061	89410000	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-21388	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
104285	chr17	80845501	80846050	+	0	NA	intron (NM_020761, intron 10 of 33)	L2|LINE|L2	-40143	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
101133	chr17	65037451	65037980	+	0	NA	intron (NM_001282425, intron 2 of 3)	FLAM_C|SINE|Alu	18059	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
152268	chr22	20268221	20268830	+	0	NA	promoter-TSS (NM_023004)	promoter-TSS (NM_023004)	-207	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
12533	chr1	108570071	108570630	+	0	NA	intron (NM_001010883, intron 1 of 10)	intron (NM_001010883, intron 1 of 10)	10250	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
238134	chrX	136697871	136698030	+	0	NA	intron (NM_004840, intron 9 of 21)	L1M4b|LINE|L1	49792	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
120351	chr19	43589671	43590300	+	0	NA	3' UTR (NM_001007561, exon 3 of 3)	3' UTR (NM_001007561, exon 3 of 3)	6150	NM_001007561	126298		NM_001007561	ENSG00000167378	IRGQ	FKSG27|IRGQ1	immunity related GTPase Q	protein-coding
110304	chr19	1839451	1839980	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	8768	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
182038	chr5	55711571	55712880	+	0	NA	promoter-TSS (NM_173514)	promoter-TSS (NM_173514)	99	NM_173514	153129		NM_173514	ENSG00000177058	SLC38A9	SNAT9|URLC11	solute carrier family 38 member 9	protein-coding
219437	chr8	72007271	72007430	+	0	NA	intron (NR_033652, intron 4 of 4)	intron (NR_033652, intron 4 of 4)	68234	NM_007332	8989		NM_007332	ENSG00000104321	TRPA1	ANKTM1|FEPS|FEPS1|p120	transient receptor potential cation channel subfamily A member 1	protein-coding
25247	chr10	6050171	6051630	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	11467	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
43187	chr11	75405851	75406800	+	0	NA	3' UTR (NM_001260506, exon 7 of 7)	3' UTR (NM_001260506, exon 7 of 7)	1904	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
33119	chr10	112137321	112137700	+	0	NA	Intergenic	Intergenic	46255	NM_020918	57678		NM_020918	ENSG00000119927	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
57814	chr12	123147521	123147780	+	0	NA	intron (NM_001300801, intron 1 of 25)	L4_B_Mam|LINE|RTE-X	3440	NM_020845	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
200530	chr6	136247751	136247850	+	0	NA	intron (NM_001318738, intron 2 of 8)	intron (NM_001318738, intron 2 of 8)	2511	NM_001318738	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
93426	chr17	18442121	18442830	+	0	NA	non-coding (NR_073414, exon 7 of 7)	non-coding (NR_073414, exon 7 of 7)	2567	NR_073414	729252		NR_073414		KRT16P1	KRT14P|KRT16P	keratin 16 pseudogene 1	pseudo
110031	chr19	1457121	1457900	+	0	NA	intron (NM_005883, intron 9 of 14)	intron (NM_005883, intron 9 of 14)	4526	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
11505	chr1	90919371	90919980	+	0	NA	intron (NM_032186, intron 2 of 3)	intron (NM_032186, intron 2 of 3)	67916	NR_146610	105378854		NR_146610		LINC01763	-	long intergenic non-protein coding RNA 1763	ncRNA
5144	chr1	24902971	24903380	+	0	NA	intron (NM_001031680, intron 5 of 5)	intron (NM_001031680, intron 5 of 5)	16241	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
126129	chr2	26069901	26070250	+	0	NA	intron (NM_016131, intron 1 of 5)	intron (NM_016131, intron 1 of 5)	35991	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
9654	chr1	52629351	52629850	+	0	NA	Intergenic	Intergenic	-3568	NR_135156	348378		NM_001042693	ENSG00000182183	SHISAL2A	FAM159A|PRO7171|WWLS2783	shisa like 2A	protein-coding
193178	chr6	29721651	29721750	+	0	NA	Intergenic	Intergenic	-1640	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
206724	chr7	36600471	36600630	+	0	NA	promoter-TSS (NR_046764)	promoter-TSS (NR_046764)	-430	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
162422	chr3	48400771	48401380	+	0	NA	Intergenic	Intergenic	28388	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
208048	chr7	56033701	56034500	+	0	NA	5' UTR (NM_001370504, exon 2 of 8)	5' UTR (NM_001370504, exon 2 of 8)	17344	NM_001370506	5723		NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
73998	chr15	52045451	52046580	+	0	NA	5' UTR (NM_002748, exon 2 of 6)	5' UTR (NM_002748, exon 2 of 6)	26796	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
68520	chr14	88791721	88793550	+	0	NA	5' UTR (NM_183387, exon 1 of 43)	5' UTR (NM_183387, exon 1 of 43)	318	NM_001385116	161436		NM_183387	ENSG00000165521	EML5	EMAP-2|EMAP-5|FAP16	EMAP like 5	protein-coding
40046	chr11	62711471	62712130	+	0	NA	TTS (NM_001079559)	TTS (NM_001079559)	-2181	NR_037949								
41748	chr11	66681251	66681350	+	0	NA	Intergenic	AluJr4|SINE|Alu	-3413	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
143946	chr20	32790051	32791000	+	0	NA	intron (NM_175849, intron 7 of 19)	intron (NM_175849, intron 7 of 19)	10673	NM_175850	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
61659	chr13	73943251	73944080	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	190264	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
65651	chr14	52329651	52330280	+	0	NA	Intergenic	Intergenic	15653	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
179294	chr4	177318201	177318600	+	0	NA	intron (NM_018248, intron 1 of 9)	intron (NM_018248, intron 1 of 9)	8526	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
228737	chr9	109640901	109641100	+	0	NA	intron (NM_001037293, intron 1 of 6)	CpG	212	NM_001037293	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
170517	chr3	186529201	186529400	+	0	NA	Intergenic	Intergenic	15080	NM_017541	1427		NM_017541	ENSG00000213139	CRYGS	CRYG8|CTRCT20	crystallin gamma S	protein-coding
139074	chr2	218863401	218863600	+	0	NA	intron (NM_006522, intron 1 of 3)	intron (NM_006522, intron 1 of 3)	3695	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
232353	chr9	135602771	135603230	+	0	NA	Intergenic	Intergenic	-11183	NM_001375657	102723971		NM_001375657	ENSG00000236543	LOC102723971	-	lipocalin 1-like	protein-coding
128105	chr2	48111321	48112480	+	0	NA	Intergenic	Intergenic	-202399	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
27424	chr10	31586851	31587350	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-187345	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
187247	chr5	141402751	141403050	+	0	NA	promoter-TSS (NM_018921)	promoter-TSS (NM_018921)	-53	NM_018921	56107		NM_018921	ENSG00000261934	PCDHGA9	PCDH-GAMMA-A9	protocadherin gamma subfamily A, 9	protein-coding
111302	chr19	3602201	3602400	+	0	NA	intron (NM_201636, intron 1 of 3)	intron (NM_201636, intron 1 of 3)	4575	NM_201636	6915		NM_001060	ENSG00000006638	TBXA2R	BDPLT13|TXA2-R	thromboxane A2 receptor	protein-coding
103263	chr17	77665671	77665830	+	0	NA	Intergenic	Intergenic	62809	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
204426	chr7	3115601	3115800	+	0	NA	Intergenic	Intergenic	42873	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
187323	chr5	141638001	141639350	+	0	NA	TTS (NM_033449)	TTS (NM_033449)	1678	NM_173828	285613		NM_173828	ENSG00000164620	RELL2	C5orf16	RELT like 2	protein-coding
34924	chr11	420501	420700	+	0	NA	exon (NM_001012302, exon 19 of 23)	exon (NM_001012302, exon 19 of 23)	-3203	NM_001135053	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
18018	chr1	160567371	160568700	+	0	NA	intron (NM_003874, intron 1 of 6)	intron (NM_003874, intron 1 of 6)	11461	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
230055	chr9	127416771	127416930	+	0	NA	Intergenic	Intergenic	-7524	NM_001286696	7633		NM_007135	ENSG00000196152	ZNF79	pT7	zinc finger protein 79	protein-coding
140279	chr2	232328021	232328280	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-50601	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
182292	chr5	57495271	57495630	+	0	NA	Intergenic	Intergenic	-12639	NM_001017992	345651		NM_001017992	ENSG00000169067	ACTBL2	ACT	actin beta like 2	protein-coding
221639	chr8	125925871	125926250	+	0	NA	intron (NR_038447, intron 3 of 3)	L1MEc|LINE|L1	25137	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
89516	chr16	89169821	89170280	+	0	NA	TTS (NR_046200)	TTS (NR_046200)	-1698	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
1390	chr1	2540251	2540350	+	0	NA	Intergenic	Intergenic	-10037	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
41971	chr11	67365871	67366300	+	0	NA	intron (NM_013246, intron 2 of 2)	L2|LINE|L2	7513	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
170760	chr3	188440621	188440880	+	0	NA	intron (NR_164692, intron 3 of 9)	intron (NR_164692, intron 3 of 9)	127916	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
45979	chr11	121469351	121469750	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	12239	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
153691	chr22	29204571	29204930	+	0	NA	Intergenic	Intergenic	-1146	NM_133455	129080		NM_133455	ENSG00000186998	EMID1	EMI5|EMU1	EMI domain containing 1	protein-coding
161205	chr3	39154701	39155330	+	0	NA	promoter-TSS (NM_001320560)	promoter-TSS (NM_001320560)	-374	NM_001320560	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
113611	chr19	10302551	10302850	+	0	NA	Intergenic	AluSx|SINE|Alu	6857	NM_001103167	100125288		NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	zinc finger GATA like protein 1	protein-coding
44946	chr11	116784151	116784250	+	0	NA	intron (NM_001317086, intron 8 of 12)	L3|LINE|CR1	3823	NM_003904	8882		NM_003904	ENSG00000109917	ZPR1	GKAF|ZNF259	ZPR1 zinc finger	protein-coding
120800	chr19	45460271	45460580	+	0	NA	Intergenic	AluJr4|SINE|Alu	-7571	NM_001114171	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
79441	chr16	709501	710200	+	0	NA	Intergenic	Intergenic	-4049	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
141124	chr2	239035201	239035830	+	0	NA	Intergenic	Intergenic	33399	NR_039642	100616397		NR_039642	ENSG00000266109	MIR4440	mir-4440	microRNA 4440	ncRNA
126272	chr2	27177651	27178150	+	0	NA	Intergenic	Intergenic	28896	NM_175769	150921		NM_175769	ENSG00000163792	TCF23	OUT|TCF-23|bHLHa24	transcription factor 23	protein-coding
206623	chr7	35858251	35858550	+	0	NA	intron (NM_001788, intron 2 of 12)	AluSc5|SINE|Alu	57181	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
55524	chr12	105279521	105279800	+	0	NA	Intergenic	MIR|SINE|MIR	-43430	NM_001251904	55198		NM_018171	ENSG00000136044	APPL2	DIP13B	adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2	protein-coding
41302	chr11	65873001	65874630	+	0	NA	Intergenic	CpG-4489	-1015	NR_037718	30008		NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin extracellular matrix protein 2	protein-coding
172830	chr4	3174451	3174750	+	0	NA	intron (NM_002111, intron 31 of 66)	intron (NM_002111, intron 31 of 66)	-69769	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
164860	chr3	71062471	71063700	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	1839	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
15863	chr1	151445501	151446050	+	0	NA	intron (NM_015100, intron 1 of 18)	intron (NM_015100, intron 1 of 18)	-3570	NM_207171	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
123914	chr19	55351871	55352450	+	0	NA	3' UTR (NM_001369798, exon 7 of 8)	3' UTR (NM_001369798, exon 7 of 8)	2559	NM_144613	125965		NM_144613	ENSG00000160471	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit 6B2	protein-coding
54662	chr12	93378401	93379150	+	0	NA	5' UTR (NM_001301022, exon 1 of 5)	5' UTR (NM_001301022, exon 1 of 5)	197	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
53812	chr12	69253771	69254400	+	0	NA	intron (NM_001300947, intron 3 of 10)	L2a|LINE|L2	14516	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
170491	chr3	186110151	186110630	+	0	NA	Intergenic	Intergenic	-1301	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
231328	chr9	130140851	130141150	+	0	NA	TTS (NM_020960)	TTS (NM_020960)	3219	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
30024	chr10	73791971	73792350	+	0	NA	non-coding (NR_160292, exon 10 of 27)	non-coding (NR_160292, exon 10 of 27)	6536	NM_015037	23053		NM_015037	ENSG00000214655	ZSWIM8	KIAA0913	zinc finger SWIM-type containing 8	protein-coding
143690	chr20	32116951	32117250	+	0	NA	intron (NM_001363731, intron 1 of 17)	AluSx1|SINE|Alu	7372	NM_001363731	9777		NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
219341	chr8	70226921	70227530	+	0	NA	intron (NM_001321713, intron 2 of 21)	L2|LINE|L2	-155973	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
239277	chrY	13738701	13738900	+	0	NA	Intergenic	Intergenic	34901	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
109279	chr19	546321	546580	+	0	NA	intron (NM_001258351, intron 1 of 4)	AluSx|SINE|Alu	2397	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
211653	chr7	106263551	106264180	+	0	NA	intron (NM_005746, intron 6 of 10)	intron (NM_005746, intron 6 of 10)	21118	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
93847	chr17	20998471	20998630	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	44461	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
25589	chr10	8044721	8045580	+	0	NA	Intergenic	Intergenic	7341	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
21581	chr1	206478671	206478930	+	0	NA	intron (NM_001193322, intron 9 of 20)	intron (NM_001193322, intron 9 of 20)	3997	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
141999	chr20	1440671	1440830	+	0	NA	Intergenic	Intergenic	26942	NM_018839	55968		NM_016143	ENSG00000088833	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 cofactor	protein-coding
215918	chr8	8230251	8230680	+	0	NA	intron (NR_024363, intron 1 of 5)	intron (NR_024363, intron 1 of 5)	1895	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
8762	chr1	42734451	42734750	+	0	NA	3' UTR (NM_001185117, exon 3 of 3)	3' UTR (NM_001185117, exon 3 of 3)	5636	NM_148960	149461		NM_148960	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
115070	chr19	14201801	14202000	+	0	NA	intron (NM_001008701, intron 1 of 23)	L2a|LINE|L2	4269	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
129742	chr2	70964651	70965830	+	0	NA	3' UTR (NM_001692, exon 14 of 14)	3' UTR (NM_001692, exon 14 of 14)	-13205	NM_001369683	79998		NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
132602	chr2	108533671	108535130	+	0	NA	promoter-TSS (NR_135290)	promoter-TSS (NR_135290)	-70	NM_001193483	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
205571	chr7	21352521	21353190	+	0	NA	Intergenic	Intergenic	-75228	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
128564	chr2	60892221	60892830	+	0	NA	intron (NM_001291746, intron 2 of 9)	AluSq2|SINE|Alu	10951	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133364	chr2	117814321	117815750	+	0	NA	intron (NM_006773, intron 1 of 13)	CpG	344	NM_006773	8886		NM_006773	ENSG00000088205	DDX18	Has1|MrDb	DEAD-box helicase 18	protein-coding
210556	chr7	100341101	100341930	+	0	NA	TTS (NR_103720)	TTS (NR_103720)	-5208	NR_003613	5379		NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
34368	chr10	132251351	132252450	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	-2792	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
218202	chr8	42011271	42011680	+	0	NA	intron (NM_001305878, intron 2 of 13)	AluSp|SINE|Alu	-40275	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
202254	chr6	156947521	156947780	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-88777	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
8435	chr1	40640351	40640900	+	0	NA	intron (NM_014747, intron 3 of 7)	intron (NM_014747, intron 3 of 7)	25057	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
182127	chr5	56126321	56126980	+	0	NA	intron (NM_024669, intron 8 of 11)	intron (NM_024669, intron 8 of 11)	106680	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
211903	chr7	112255351	112255450	+	0	NA	intron (NM_021994, intron 1 of 11)	intron (NM_021994, intron 1 of 11)	48705	NM_021994	11179		NM_021994	ENSG00000198839	ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
106749	chr18	23575101	23575700	+	0	NA	intron (NM_000271, intron 1 of 24)	intron (NM_000271, intron 1 of 24)	11106	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
48959	chr12	12845801	12846200	+	0	NA	Intergenic	Intergenic	-29477	NR_003932	387841		NR_003932	ENSG00000234498	RPL13AP20	HANR|RPL13A_9_1211	ribosomal protein L13a pseudogene 20	pseudo
37933	chr11	34246571	34246730	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	111360	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
236747	chrX	78329301	78329900	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-1909	NM_001282186	10800		NM_006639	ENSG00000173198	CYSLTR1	CYSLT1|CYSLT1R|CYSLTR|HMTMF81	cysteinyl leukotriene receptor 1	protein-coding
132952	chr2	111462501	111462700	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	32561	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
59327	chr13	24459301	24459580	+	0	NA	intron (NM_006437, intron 18 of 33)	intron (NM_006437, intron 18 of 33)	53338	NM_006437	143		NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	poly(ADP-ribose) polymerase family member 4	protein-coding
223930	chr9	642021	642280	+	0	NA	intron (NM_001256877, intron 2 of 12)	intron (NM_001256877, intron 2 of 12)	-44617	NM_001354336	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
24433	chr1	243592101	243592300	+	0	NA	intron (NM_005465, intron 8 of 13)	AluY|SINE|Alu	246024	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
237157	chrX	107466071	107466230	+	0	NA	Intergenic	Intergenic	-56300	NM_032428	84443		NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
107159	chr18	35289471	35291550	+	0	NA	promoter-TSS (NM_001288711)	promoter-TSS (NM_001288711)	238	NR_024566	10778		NM_006629	ENSG00000293516	ZNF271P	CT-ZFP48|HZF7|ZNF-EB|ZNF-dp|ZNF271|ZNFEB	zinc finger protein 271, pseudogene	pseudo
86146	chr16	57738271	57738430	+	0	NA	intron (NM_005886, intron 2 of 19)	AluSx1|SINE|Alu	2580	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
183489	chr5	79270971	79271330	+	0	NA	intron (NM_152405, intron 1 of 10)	AluJb|SINE|Alu	35019	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
194635	chr6	33579601	33580830	+	0	NA	promoter-TSS (NM_001188)	promoter-TSS (NM_001188)	61	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
92181	chr17	7718151	7718400	+	0	NA	5' UTR (NM_020877, exon 1 of 86)	5' UTR (NM_020877, exon 1 of 86)	531	NM_001303270	146754		NM_020877	ENSG00000183914	DNAH2	DNAHC2|DNHD3|SPGF45	dynein axonemal heavy chain 2	protein-coding
138228	chr2	202763971	202764530	+	0	NA	intron (NM_173511, intron 7 of 7)	intron (NM_173511, intron 7 of 7)	64984	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
122581	chr19	49687401	49687630	+	0	NA	intron (NM_001536, intron 10 of 10)	intron (NM_001536, intron 10 of 10)	-1170	NM_001101340	199800		NM_001101340	ENSG00000224420	ADM5	AM5|C19orf76	adrenomedullin 5 (putative)	protein-coding
108582	chr18	75198151	75198630	+	0	NA	3' UTR (NM_001306093, exon 2 of 2)	3' UTR (NM_001306093, exon 2 of 2)	7123	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
94598	chr17	29732951	29733050	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	28432	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
63569	chr14	20428821	20429130	+	0	NA	exon (NM_001109997, exon 4 of 4)	exon (NM_001109997, exon 4 of 4)	6855	NM_001109997	123103		NM_001109997	ENSG00000185271	KLHL33	-	kelch like family member 33	protein-coding
139938	chr2	230797621	230798180	+	0	NA	intron (NM_016289, intron 4 of 8)	intron (NM_016289, intron 4 of 8)	-66285	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
13983	chr1	120603771	120604380	+	0	NA	intron (NR_144516, intron 5 of 43)	L1PB1|LINE|L1	45390	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
212628	chr7	129368671	129368830	+	0	NA	intron (NM_001130723, intron 1 of 16)	intron (NM_001130723, intron 1 of 16)	370	NM_001130723	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
197509	chr6	75748701	75750030	+	0	NA	non-coding (NR_160539, exon 1 of 10)	non-coding (NR_160539, exon 1 of 10)	126	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
178139	chr4	142284221	142284650	+	0	NA	intron (NR_169617, intron 7 of 22)	L2a|LINE|L2	21397	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
16464	chr1	154606371	154606730	+	0	NA	promoter-TSS (NM_001193495)	promoter-TSS (NM_001193495)	-297	NM_001193495	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
56079	chr12	110619621	110619880	+	0	NA	intron (NM_001173976, intron 2 of 14)	intron (NM_001173976, intron 2 of 14)	5621	NM_001082537	79600		NM_024549	ENSG00000204852	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
211754	chr7	107196021	107197730	+	0	NA	intron (NM_001244262, intron 9 of 10).2	AluJb|SINE|Alu	27872	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
221701	chr8	127169821	127170750	+	0	NA	Intergenic	Intergenic	27342	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
159056	chr3	11641501	11642200	+	0	NA	intron (NM_014667, intron 2 of 5)	intron (NM_014667, intron 2 of 5)	2065	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
68671	chr14	90276821	90277200	+	0	NA	3' UTR (NM_017970, exon 14 of 14)	3' UTR (NM_017970, exon 14 of 14)	19071	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
187029	chr5	139791551	139791650	+	0	NA	Intergenic	AluJb|SINE|Alu	-4208	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
216175	chr8	11773851	11774150	+	0	NA	intron (NM_001135748, intron 3 of 4)	THE1B|LTR|ERVL-MaLR	4290	NM_001135748	252969		NM_145043	ENSG00000154328	NEIL2	NEH2|NEI2	nei like DNA glycosylase 2	protein-coding
34677	chr10	133357181	133358680	+	0	NA	promoter-TSS (NM_001098483)	promoter-TSS (NM_001098483)	89	NM_001301827	282969		NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
92888	chr17	16436871	16437630	+	0	NA	TTS (NM_016113)	TTS (NM_016113)	-1737	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
101512	chr17	67751651	67751950	+	0	NA	Intergenic	AluJo|SINE|Alu	11130	NR_003706	100124536		NR_003706	ENSG00000200394	SNORA38B	-	small nucleolar RNA, H/ACA box 38B	snoRNA
96713	chr17	41598151	41598450	+	0	NA	Intergenic	(TGGTGG)n|Simple_repeat|Simple_repeat	-11405	NM_000526	3861		NM_000526	ENSG00000186847	KRT14	CK14|EBS1|EBS1A|EBS1B|EBS1C|EBS1D|EBS3|EBS4|K14|NFJ	keratin 14	protein-coding
155148	chr22	37665771	37665930	+	0	NA	exon (NM_020315, exon 2 of 2)	exon (NM_020315, exon 2 of 2)	7127	NM_020315	57026		NM_020315	ENSG00000241360	PDXP	CIN|PLP|dJ37E16.5	pyridoxal phosphatase	protein-coding
63738	chr14	21221821	21222150	+	0	NA	intron (NM_001077443, intron 4 of 7)	AluY|SINE|Alu	-15085	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
57489	chr12	122086971	122087130	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	8294	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
82650	chr16	19180051	19180230	+	0	NA	intron (NM_016524, intron 3 of 7)	intron (NM_016524, intron 3 of 7)	7805	NM_001308157	51760		NM_016524	ENSG00000103528	SYT17	Syt-17|sytXVII	synaptotagmin 17	protein-coding
142275	chr20	3203961	3205350	+	0	NA	promoter-TSS (NM_023935)	promoter-TSS (NM_023935)	27	NM_023935	65992		NM_023935	ENSG00000198171	DDRGK1	C20orf116|SEMDSH|UFBP1|dJ1187M17.3	DDRGK domain containing 1	protein-coding
919	chr1	1704071	1704830	+	0	NA	intron (NR_132739, intron 14 of 19)	intron (NR_132739, intron 14 of 19)	4511	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
102057	chr17	74880751	74881250	+	0	NA	intron (NM_178128, intron 4 of 5)	intron (NM_178128, intron 4 of 5)	-8006	NM_001258013	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
232059	chr9	133470321	133470780	+	0	NA	TTS (NM_001145099).2	TTS (NM_001145099).2	8549	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
9911	chr1	54408771	54408930	+	0	NA	Intergenic	Intergenic	-2456	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
152323	chr22	20391471	20391630	+	0	NA	Intergenic	(ACACAT)n|Simple_repeat|Simple_repeat	-2565	NM_001256524	7625		NM_003426	ENSG00000185252	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
109246	chr19	514121	514780	+	0	NA	intron (NM_033513, intron 1 of 1)	intron (NM_033513, intron 1 of 1)	6953	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
71642	chr14	106769951	106771330	+	0	NA	Intergenic	Intergenic	80359	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
98547	chr17	47680651	47680750	+	0	NA	intron (NM_002265, intron 21 of 21)	intron (NM_002265, intron 21 of 21)	-14564	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
192709	chr6	26326171	26326330	+	0	NA	Intergenic	Intergenic	-38909	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
165498	chr3	100068821	100069230	+	0	NA	intron (NM_182909, intron 1 of 5)	intron (NM_182909, intron 1 of 5)	45488	NM_001042459	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
104102	chr17	80273121	80273380	+	0	NA	exon (NM_001256071, exon 3 of 68)	exon (NM_001256071, exon 3 of 68)	12398	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
236592	chrX	73567601	73568100	+	0	NA	intron (NM_001039840, intron 1 of 5)	intron (NM_001039840, intron 1 of 5)	4702	NM_001039840	53344		NM_001039840	ENSG00000204116	CHIC1	BRX	cysteine rich hydrophobic domain 1	protein-coding
26704	chr10	22649371	22650780	+	0	NA	intron (NM_005028, intron 1 of 9)	L2c|LINE|L2	64033	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
17942	chr1	160340171	160340330	+	0	NA	exon (NM_004371, exon 2 of 33)	exon (NM_004371, exon 2 of 33)	3000	NM_001098398	1314		NM_004371	ENSG00000122218	COPA	AILJK|HEP-COP|alpha-COP	COPI coat complex subunit alpha	protein-coding
162950	chr3	49555821	49556080	+	0	NA	intron (NM_003458, intron 1 of 11)	intron (NM_003458, intron 1 of 11)	1473	NM_003458	8927		NM_003458	ENSG00000164061	BSN	ZNF231	bassoon presynaptic cytomatrix protein	protein-coding
167315	chr3	128728471	128728900	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSp|SINE|Alu	2502	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
80737	chr16	3134151	3136100	+	0	NA	promoter-TSS (NR_110900)	promoter-TSS (NR_110900)	96	NM_004220	7760		NM_004220	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
150025	chr21	37259701	37259900	+	0	NA	intron (NM_006052, intron 1 of 7)	intron (NM_006052, intron 1 of 7)	7534	NM_006052	10311		NM_006052	ENSG00000157538	VPS26C	DCRA|DSCR3|DSCRA	VPS26 endosomal protein sorting factor C	protein-coding
199372	chr6	116256001	116256380	+	0	NA	non-coding (NR_136520, exon 2 of 2)	non-coding (NR_136520, exon 2 of 2)	2019	NM_001322938	29940		NM_013352	ENSG00000111817	DSE	DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
152247	chr22	20209471	20210400	+	0	NA	Intergenic	Intergenic	3603	NR_026919	150197		NM_152508	ENSG00000236499	LINC00896	-	long intergenic non-protein coding RNA 896	ncRNA
127781	chr2	44188521	44188780	+	0	NA	intron (NM_177969, intron 1 of 4)	AluJr|SINE|Alu	19775	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
179788	chr5	351621	352200	+	0	NA	intron (NR_165159, intron 4 of 13)	intron (NR_165159, intron 4 of 13)	29300	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
120214	chr19	42299351	42300330	+	0	NA	intron (NM_002573, intron 4 of 4)	intron (NM_002573, intron 4 of 4)	-2292	NM_199285	284338		NM_199285	ENSG00000188368	PRR19	-	proline rich 19	protein-coding
149963	chr21	36388671	36389050	+	0	NA	intron (NM_005441, intron 3 of 13)	intron (NM_005441, intron 3 of 13)	3468	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
38682	chr11	46555401	46555730	+	0	NA	intron (NM_001367471, intron 1 of 18)	intron (NM_001367471, intron 1 of 18)	31879	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
118832	chr19	38596101	38596930	+	0	NA	intron (NM_007181, intron 25 of 31)	CpG	168	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
154543	chr22	36163421	36163830	+	0	NA	intron (NM_145641, intron 1 of 4)	intron (NM_145641, intron 1 of 4)	2552	NM_145642	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
162600	chr3	48694871	48695600	+	0	NA	non-coding (NR_027438, exon 2 of 4)	non-coding (NR_027438, exon 2 of 4)	-9320	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
129597	chr2	70089501	70090400	+	0	NA	TTS (NM_006196)	TTS (NM_006196)	2473	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
51404	chr12	51994151	51994600	+	0	NA	3' UTR (NM_004302, exon 9 of 9)	3' UTR (NM_004302, exon 9 of 9)	-12571	NM_181711	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
30394	chr10	78230301	78230500	+	0	NA	Intergenic	(CACCAC)n|Simple_repeat|Simple_repeat	-18225	NR_038985	100132987		NR_038985	ENSG00000230417	LINC00856	-	long intergenic non-protein coding RNA 856	ncRNA
42212	chr11	68029871	68031430	+	0	NA	promoter-TSS (NM_002496)	promoter-TSS (NM_002496)	-31	NM_002496	4728		NM_002496	ENSG00000110717	NDUFS8	CI-23k|CI23KD|MC1DN2|TYKY	NADH:ubiquinone oxidoreductase core subunit S8	protein-coding
191166	chr6	4913851	4914150	+	0	NA	intron (NM_001368126, intron 2 of 6)	L1MCc|LINE|L1	23960	NM_001143971	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
43681	chr11	85810701	85811980	+	0	NA	promoter-TSS (NM_001365826)	promoter-TSS (NM_001365826)	-181	NM_001289608	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
220017	chr8	90637151	90637250	+	0	NA	intron (NM_001008495, intron 1 of 2)	intron (NM_001008495, intron 1 of 2)	8705	NM_001146273	169200		NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
140246	chr2	231961171	231962450	+	0	NA	promoter-TSS (NM_152383)	promoter-TSS (NM_152383)	97	NM_152383	129563		NM_152383	ENSG00000144535	DIS3L2	FAM6A|PRLMNS|hDIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein-coding
175395	chr4	70801101	70801500	+	0	NA	intron (NM_001037442, intron 15 of 17)	L1MC1|LINE|L1	37961	NM_001098477	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
185228	chr5	122844221	122844500	+	0	NA	Intergenic	Intergenic	-1089	NR_146145	28966		NM_014035	ENSG00000064652	SNX24	PRO1284|SBBI31	sorting nexin 24	protein-coding
68869	chr14	91311201	91311750	+	0	NA	intron (NM_001080414, intron 15 of 29)	MLT1J2|LTR|ERVL-MaLR	-57595	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
76550	chr15	75206951	75207050	+	0	NA	exon (NM_015492, exon 2 of 3)	exon (NM_015492, exon 2 of 3)	5118	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
151358	chr21	45767151	45767650	+	0	NA	intron (NM_001348243, intron 3 of 15)	L1MB5|LINE|L1	19386	NM_001382277	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
177418	chr4	112321851	112322380	+	0	NA	intron (NM_001253884, intron 2 of 14)	intron (NM_001253884, intron 2 of 14)	24746	NM_001102406	80216		NM_025144	ENSG00000073331	ALPK1	8430410J10Rik|LAK|ROSAH	alpha kinase 1	protein-coding
59129	chr13	21395971	21396630	+	0	NA	intron (NM_153251, intron 7 of 11)	intron (NM_153251, intron 7 of 11)	-51441	NR_103841	100652865		NR_103840	ENSG00000224429	LINC00539	LINC00422	long intergenic non-protein coding RNA 539	ncRNA
129411	chr2	68971671	68971860	+	0	NA	Intergenic	Intergenic	-2871	NM_019617	56287		NM_019617	ENSG00000169605	GKN1	AMP18|BRICD1|CA11|FOV|foveolin	gastrokine 1	protein-coding
233133	chr9	137150251	137152250	+	0	NA	intron (NM_007327, intron 4 of 19)	intron (NM_007327, intron 4 of 19)	12096	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
23920	chr1	235043171	235043530	+	0	NA	Intergenic	Intergenic	26468	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
100963	chr17	64509701	64510050	+	0	NA	intron (NR_133644, intron 2 of 19)	intron (NR_133644, intron 2 of 19)	2898	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
219525	chr8	74866951	74867050	+	0	NA	Intergenic	L1PA2|LINE|L1	42466	NM_015886	51050		NM_015886	ENSG00000137558	PI15	CRISP8|P24TI|P25TI	peptidase inhibitor 15	protein-coding
90564	chr17	1512251	1512700	+	0	NA	intron (NM_016532, intron 3 of 11)	intron (NM_016532, intron 3 of 11)	4137	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
117983	chr19	33429001	33429400	+	0	NA	intron (NM_001166056, intron 7 of 12)	MLT1I|LTR|ERVL-MaLR	54676	NM_001252296	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
160184	chr3	23758201	23758800	+	0	NA	Intergenic	Tigger18a|DNA|TcMar-Tigger	-47455	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
194552	chr6	33342771	33342930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13571	NM_001369203	113523636		NM_001369203	ENSG00000286920	SMIM40	-	small integral membrane protein 40	protein-coding
52606	chr12	56233371	56234250	+	0	NA	intron (NM_173596, intron 5 of 12)	L3|LINE|CR1	3093	NM_001135195	283375		NM_173596	ENSG00000139540	SLC39A5	LZT-Hs7|MYP24|ZIP5	solute carrier family 39 member 5	protein-coding
177685	chr4	121810801	121811350	+	0	NA	intron (NM_005033, intron 7 of 11)	MIR|SINE|MIR	9752	NM_001034194	5393		NM_005033	ENSG00000123737	EXOSC9	PCH1D|PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
117212	chr19	19404051	19404150	+	0	NA	intron (NM_001384535, intron 1 of 10)	intron (NM_001384535, intron 1 of 10)	-1575	NM_001384527	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
143979	chr20	32856701	32857250	+	0	NA	Intergenic	AluSg|SINE|Alu	-1948	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
157292	chr22	44329071	44329930	+	0	NA	Intergenic	Intergenic	-16549	NM_001099294	85352		NM_001099294	ENSG00000138944	SHISAL1	KIAA1644	shisa like 1	protein-coding
146917	chr20	51608801	51609030	+	0	NA	intron (NM_006045, intron 24 of 27)	L2a|LINE|L2	-46076	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
63820	chr14	21453001	21453400	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	2923	NM_001170629	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
184644	chr5	107472301	107473100	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	198237	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
29184	chr10	68956801	68957700	+	0	NA	intron (NM_001256910, intron 1 of 14)	intron (NM_001256910, intron 1 of 14)	810	NM_001256910	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
141670	chr2	241798051	241799050	+	0	NA	intron (NM_022134, intron 1 of 3)	MLT1A|LTR|ERVL-MaLR	-10643	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
168533	chr3	144200401	144200600	+	0	NA	Intergenic	Intergenic	227419	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
74637	chr15	60806421	60807280	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	125281	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
35005	chr11	533951	534130	+	0	NA	intron (NM_176795, intron 2 of 5)	intron (NM_176795, intron 2 of 5)	1527	NM_176795	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
193062	chr6	28686401	28686700	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-32075	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
192631	chr6	26130551	26130800	+	0	NA	Intergenic	AluY|SINE|Alu	6503	NM_003512	8334		NM_003512	ENSG00000180573	H2AC6	H2A/l|H2AFL|HIST1H2AC|dJ221C16.4	H2A clustered histone 6	protein-coding
157127	chr22	42671251	42671650	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-22058	NM_000398	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
205820	chr7	24665671	24665930	+	0	NA	intron (NM_001303037, intron 7 of 11)	intron (NM_001303037, intron 7 of 11)	91664	NM_001127453	1687		NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
174499	chr4	39956621	39956880	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluJb|SINE|Alu	21161	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
224813	chr9	26856551	26856650	+	0	NA	intron (NM_024828, intron 5 of 5)	L3|LINE|CR1	36202	NM_024828	79886		NM_024828	ENSG00000120159	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
72809	chr15	40098221	40099350	+	0	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	7301	NM_001003942	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
203180	chr6	167122001	167122830	+	0	NA	promoter-TSS (NM_031409)	promoter-TSS (NM_031409)	-338	NM_031409	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
178267	chr4	143774071	143774300	+	0	NA	Intergenic	L1PA16|LINE|L1	55163	NR_134680	105377458		NR_134680		LOC105377458	-	uncharacterized LOC105377458	ncRNA
186855	chr5	139470571	139471630	+	0	NA	promoter-TSS (NM_001365197)	promoter-TSS (NM_001365197)	96	NM_001365197	111064649		NM_001365197	ENSG00000283288	SMIM33	-	small integral membrane protein 33	protein-coding
84293	chr16	30083621	30083880	+	0	NA	exon (NM_001303503, exon 7 of 9)	exon (NM_001303503, exon 7 of 9)	7756	NM_001303507	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
103686	chr17	78804501	78804780	+	0	NA	intron (NR_169585, intron 15 of 19)	L1PA10|LINE|L1	-22298	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
219847	chr8	81890551	81890770	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-48374	NM_022133	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
28969	chr10	63245651	63246150	+	0	NA	intron (NM_001322252, intron 2 of 24)	THE1B|LTR|ERVL-MaLR	23323	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
42724	chr11	72689221	72689680	+	0	NA	intron (NR_161388, intron 25 of 29)	intron (NR_161388, intron 25 of 29)	-11024	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
151671	chr22	17097121	17097380	+	0	NA	intron (NM_014339, intron 2 of 12)	intron (NM_014339, intron 2 of 12)	12250	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
132420	chr2	105820401	105820800	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-31247	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
50505	chr12	47812621	47814200	+	0	NA	intron (NR_160436, intron 1 of 25)	intron (NR_160436, intron 1 of 25)	6493	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
1044	chr1	1884421	1885030	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluY|SINE|Alu	6362	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
220384	chr8	100212911	100213800	+	0	NA	exon (NM_003114, exon 11 of 19)	exon (NM_003114, exon 11 of 19)	54768	NM_003114	6674		NM_003114	ENSG00000104450	SPAG1	CILD28|CT140|DNAAF13|HEL-S-268|HSD-3.8|SP75|TPIS	sperm associated antigen 1	protein-coding
165466	chr3	98732551	98733250	+	0	NA	promoter-TSS (NR_046683)	promoter-TSS (NR_046683)	196	NM_001323364	10402		NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
91490	chr17	4901601	4902270	+	0	NA	exon (NM_000080, exon 5 of 12)	exon (NM_000080, exon 5 of 12)	1163	NM_000080	1145		NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1A1|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|FIM1|FIMG|FIMG1|MGI|SCCMS	cholinergic receptor nicotinic epsilon subunit	protein-coding
239026	chrY	3003601	3005030	+	0	NA	intron (NR_046502, intron 1 of 3)	HERV3-int|LTR|ERV1	1319	NR_046502	100873962		NR_046502	ENSG00000231535	LINC00278	NCRNA00278|YY1BM	long intergenic non-protein coding RNA 278	ncRNA
11673	chr1	91823871	91824030	+	0	NA	intron (NR_036634, intron 2 of 17)	AluJb|SINE|Alu	62201	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
32746	chr10	104315351	104315450	+	0	NA	exon (NM_001272013, exon 2 of 2)	exon (NM_001272013, exon 2 of 2)	-7964	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
190705	chr6	234421	235280	+	0	NA	Intergenic	Intergenic	-29366	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
227115	chr9	85937101	85937700	+	0	NA	Intergenic	MER61F|LTR|ERV1	-3742	NM_001321881	60560		NM_021929	ENSG00000135040	NAA35	EGAP|MAK10|MAK10P|bA379P1.1	N-alpha-acetyltransferase 35, NatC auxiliary subunit	protein-coding
134862	chr2	148712721	148713080	+	0	NA	intron (NM_015630, intron 2 of 13)	intron (NM_015630, intron 2 of 13)	68149	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
170336	chr3	184417751	184418200	+	0	NA	intron (NR_161198, intron 1 of 2)	intron (NR_161198, intron 1 of 2)	16438	NR_161198	105374250		NR_161198	ENSG00000224153	LINC02054	-	long intergenic non-protein coding RNA 2054	ncRNA
70145	chr14	100283801	100284000	+	0	NA	Intergenic	AluJo|SINE|Alu	6543	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
144271	chr20	34565621	34566350	+	0	NA	intron (NM_080476, intron 11 of 11)	(CA)n|Simple_repeat|Simple_repeat	7267	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
233716	chrX	1327771	1328400	+	0	NA	Intergenic	Intergenic	-8531	NM_001267713	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
215692	chr8	902651	902830	+	0	NA	intron (NR_073397, intron 2 of 3)	CpG	-19514	NR_160729	105377777		NR_160729		LOC105377777	-	uncharacterized LOC105377777	ncRNA
184743	chr5	109709621	109709880	+	0	NA	intron (NM_002372, intron 1 of 21)	Tigger10|DNA|TcMar-Tigger	20384	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
58388	chr12	131860721	131861200	+	0	NA	Intergenic	Intergenic	32567	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
106776	chr18	23826771	23826930	+	0	NA	intron (NM_198129, intron 22 of 74)	intron (NM_198129, intron 22 of 74)	-46170	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
152029	chr22	19445721	19445980	+	0	NA	intron (NM_173793, intron 2 of 2)	AluSx1|SINE|Alu	1861	NM_001166242	128977		NM_173793	ENSG00000242259	C22orf39	Pants	chromosome 22 open reading frame 39	protein-coding
77973	chr15	89401721	89402180	+	0	NA	intron (NR_160724, intron 1 of 2)	intron (NR_160724, intron 1 of 2)	1779	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
91465	chr17	4835501	4836350	+	0	NA	intron (NM_015716, intron 1 of 30)	intron (NM_015716, intron 1 of 30)	2585	NM_001024937	50488		NM_015716	ENSG00000141503	MINK1	B55|MAP4K6|MEKKK 6|MINK|YSK2|ZC3	misshapen like kinase 1	protein-coding
59097	chr13	21139821	21141250	+	0	NA	promoter-TSS (NM_005870)	promoter-TSS (NM_005870)	-11	NM_001366643	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
58512	chr12	132180451	132180550	+	0	NA	Intergenic	L1MB3|LINE|L1	9195	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
122306	chr19	49116171	49116930	+	0	NA	intron (NM_022165, intron 4 of 5)	L2b|LINE|L2	2180	NM_001308419	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
154270	chr22	31628871	31629600	+	0	NA	intron (NM_014338, intron 1 of 8)	intron (NM_014338, intron 1 of 8)	1589	NM_014338	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
124585	chr2	740021	740880	+	0	NA	Intergenic	Intergenic	-63044	NM_152834	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
217382	chr8	28094521	28094980	+	0	NA	intron (NM_001284220, intron 1 of 13)	AluSx1|SINE|Alu	1611	NM_001284224	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
73064	chr15	40909501	40909930	+	0	NA	TTS (NR_135836)	TTS (NR_135836)	2906	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
104474	chr17	81122501	81122700	+	0	NA	exon (NM_004920, exon 10 of 13)	exon (NM_004920, exon 10 of 13)	2773	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
200362	chr6	134167201	134167400	+	0	NA	Intergenic	Intergenic	7566	NM_005627	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
186961	chr5	139664151	139664630	+	0	NA	intron (NM_001317207, intron 1 of 2)	intron (NM_001317207, intron 1 of 2)	4835	NM_001317206	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
191198	chr6	5303171	5303530	+	0	NA	intron (NM_001374876, intron 2 of 7)	intron (NM_001374876, intron 2 of 7)	41837	NM_001374879	10667		NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
6733	chr1	30685071	30685880	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-33297	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
220230	chr8	96336721	96336980	+	0	NA	3' UTR (NM_001290225, exon 11 of 11)	3' UTR (NM_001290225, exon 11 of 11)	49798	NR_125829	102724804		NR_125828		LOC102724804	-	uncharacterized LOC102724804	ncRNA
167807	chr3	133577821	133578130	+	0	NA	intron (NM_001282764, intron 2 of 4)	intron (NM_001282764, intron 2 of 4)	3541	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
204850	chr7	5783851	5784680	+	0	NA	Intergenic	AluY|SINE|Alu	-2602	NM_207116	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
127369	chr2	39265471	39265630	+	0	NA	intron (NM_003618, intron 27 of 33)	intron (NM_003618, intron 27 of 33)	-21567	NR_144521	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
20039	chr1	185346071	185346680	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	-11336	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
108878	chr18	79394701	79395270	+	0	NA	promoter-TSS (NM_001278670)	promoter-TSS (NM_001278670)	-945	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
124316	chr19	58094851	58095550	+	0	NA	intron (NM_001145542, intron 1 of 6)	intron (NM_001145542, intron 1 of 6)	3031	NM_001145543	65982		NM_023926	ENSG00000121413	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
10897	chr1	82777301	82777500	+	0	NA	Intergenic	MER66C|LTR|ERV1	-125783	NR_147074	103283057		NR_147074	ENSG00000230817	LINC01362	-	long intergenic non-protein coding RNA 1362	ncRNA
78378	chr15	91660151	91660450	+	0	NA	Intergenic	Intergenic	-193408	NM_013272	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
46874	chr11	133953751	133954380	+	0	NA	intron (NM_001277285, intron 1 of 19)	intron (NM_001277285, intron 1 of 19)	2903	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
57983	chr12	124044851	124045150	+	0	NA	intron (NM_001347902, intron 2 of 4)	intron (NM_001347902, intron 2 of 4)	71785	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
70644	chr14	102922471	102924700	+	0	NA	intron (NM_030943, intron 1 of 11)	CpG	922	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
158629	chr3	4973051	4973380	+	0	NA	intron (NR_125915, intron 1 of 3)	AluSx1|SINE|Alu	-6222	NM_003670	8553		NM_003670	ENSG00000134107	BHLHE40	BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14	basic helix-loop-helix family member e40	protein-coding
118936	chr19	38774121	38774380	+	0	NA	promoter-TSS (NM_002307)	promoter-TSS (NM_002307)	-733	NM_002307	3963		NM_002307	ENSG00000205076	LGALS7	GAL7|LGALS7A	galectin 7	protein-coding
125590	chr2	16665451	16666880	+	0	NA	promoter-TSS (NM_030797)	promoter-TSS (NM_030797)	-331	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
175672	chr4	76984101	76984880	+	0	NA	intron (NM_018243, intron 1 of 9)	intron (NM_018243, intron 1 of 9)	34738	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
1878	chr1	6428571	6428730	+	0	NA	intron (NM_031475, intron 2 of 12)	intron (NM_031475, intron 2 of 12)	1246	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
221715	chr8	127208871	127209030	+	0	NA	non-coding (NR_108049, exon 2 of 2)	non-coding (NR_108049, exon 2 of 2)	10318	NR_108049	100507056		NR_108049		CCAT1	CARLO5|CARLo-5|onco-lncRNA-40	colon cancer associated transcript 1	ncRNA
69096	chr14	92258471	92259050	+	0	NA	Intergenic	MIRb|SINE|MIR	-63821	NM_153648	123041		NM_153646	ENSG00000140090	SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 member 4	protein-coding
119226	chr19	39462521	39463180	+	0	NA	intron (NM_001111020, intron 10 of 29)	AluSx1|SINE|Alu	-5372	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
50402	chr12	47328821	47329180	+	0	NA	Intergenic	Intergenic	-21601	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
153538	chr22	26580921	26581180	+	0	NA	intron (NM_001362923, intron 1 of 7)	(AC)n|Simple_repeat|Simple_repeat	9082	NM_003595	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
197798	chr6	87692271	87692980	+	0	NA	intron (NM_018064, intron 1 of 4)	AluSx|SINE|Alu	9608	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
31392	chr10	95183471	95184130	+	0	NA	Intergenic	CpG	-10400	NM_207321	142827		NM_207321	ENSG00000173124	ACSM6	C10orf129|bA310E22.3	acyl-CoA synthetase medium chain family member 6	protein-coding
66584	chr14	63507001	63507200	+	0	NA	intron (NM_006246, intron 2 of 13)	intron (NM_006246, intron 2 of 13)	1138	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
28070	chr10	43307301	43307700	+	0	NA	Intergenic	Intergenic	-40435	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
95299	chr17	35536451	35537200	+	0	NA	intron (NM_001363830, intron 1 of 4)	AluJb|SINE|Alu	1036	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
89636	chr16	89328521	89329300	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	8458	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
91291	chr17	4161621	4161880	+	0	NA	Intergenic	Intergenic	18053	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
75196	chr15	64809701	64810400	+	0	NA	Intergenic	Intergenic	15597	NM_001286496	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
21566	chr1	206461301	206462300	+	0	NA	3' UTR (NM_001377444, exon 24 of 24)	3' UTR (NM_001377444, exon 24 of 24)	-8676	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
228785	chr9	111630751	111631980	+	0	NA	promoter-TSS (NM_001015882)	promoter-TSS (NM_001015882)	13	NR_037148	548645		NM_001015882	ENSG00000059769	DNAJC25	bA16L21.2.1	DnaJ heat shock protein family (Hsp40) member C25	protein-coding
13489	chr1	114719451	114720030	+	0	NA	exon (NM_001007553, exon 18 of 20)	exon (NM_001007553, exon 18 of 20)	-2969	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
22162	chr1	212225201	212226200	+	0	NA	intron (NR_125984, intron 3 of 3)	intron (NR_125984, intron 3 of 3)	9036	NR_125983	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
134998	chr2	152740001	152740200	+	0	NA	intron (NM_001371972, intron 3 of 3)	AluJb|SINE|Alu	21151	NM_001350068	151188		NM_152522	ENSG00000177917	ARL6IP6	AIP-6|AIP6|PFAAP1	ADP ribosylation factor like GTPase 6 interacting protein 6	protein-coding
130350	chr2	85008951	85009580	+	0	NA	intron (NM_020122, intron 1 of 6)	MSTA|LTR|ERVL-MaLR	38104	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
151727	chr22	17767271	17768700	+	0	NA	intron (NM_001244567, intron 1 of 5)	L1MB7|LINE|L1	-3726	NR_036168	100423025		NR_036168	ENSG00000264757	MIR3198-1	MIR3198|mir-3198-1	microRNA 3198-1	ncRNA
187874	chr5	148457201	148457540	+	0	NA	intron (NM_001040169, intron 5 of 5)	intron (NM_001040169, intron 5 of 5)	73412	NM_030793	81545		NM_030793	ENSG00000145868	FBXO38	Fbx38|HMN2D|HMND6|MOKA|SP329	F-box protein 38	protein-coding
29685	chr10	72050171	72051300	+	0	NA	Intergenic	Intergenic	37816	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
24939	chr10	1237621	1238330	+	0	NA	intron (NM_018702, intron 5 of 9)	intron (NM_018702, intron 5 of 9)	78207	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
96008	chr17	39222701	39223600	+	0	NA	intron (NM_001351360, intron 1 of 10)	intron (NM_001351360, intron 1 of 10)	2795	NM_198993	342667		NM_198993	ENSG00000141750	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
198304	chr6	100464621	100465150	+	0	NA	promoter-TSS (NM_001374769)	promoter-TSS (NM_001374769)	36	NM_005068	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
234148	chrX	10108401	10108780	+	0	NA	intron (NM_015691, intron 8 of 22)	MER117|DNA|hAT-Charlie	-48355	NM_001256944	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
199695	chr6	123803521	123804030	+	0	NA	promoter-TSS (NM_001300737)	promoter-TSS (NM_001300737)	-71	NM_001300737	154215		NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	sodium/potassium transporting ATPase interacting 2	protein-coding
222803	chr8	142447371	142448330	+	0	NA	Intergenic	Intergenic	-1799	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
214479	chr7	150377271	150377430	+	0	NA	Intergenic	LTR39|LTR|ERV1	-1980	NM_173680	285971		NM_173680	ENSG00000196456	ZNF775	-	zinc finger protein 775	protein-coding
37439	chr11	17544071	17544530	+	0	NA	exon (NM_001297764, exon 1 of 20)	exon (NM_001297764, exon 1 of 20)	116	NR_123738	10083		NM_005709	ENSG00000006611	USH1C	AIE-75|DFNB18|DFNB18A|NY-CO-37|NY-CO-38|PDZ-45|PDZ-73|PDZ-73/NY-CO-38|PDZ73|PDZD7C|ush1cpst	USH1 protein network component harmonin	protein-coding
48453	chr12	9740451	9740930	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-7391	NM_001253750	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
198031	chr6	90158351	90158850	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	138243	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
142524	chr20	4973451	4973950	+	0	NA	intron (NM_203327, intron 1 of 16)	intron (NM_203327, intron 1 of 16)	27810	NM_005116	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
181845	chr5	53031521	53032200	+	0	NA	intron (NR_073104, intron 2 of 28)	intron (NR_073104, intron 2 of 28)	42508	NM_002203	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
144344	chr20	34996551	34996750	+	0	NA	exon (NM_020884, exon 30 of 45)	exon (NM_020884, exon 30 of 45)	-6178	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
181370	chr5	40599821	40600080	+	0	NA	Intergenic	Intergenic	-79965	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
24288	chr1	236527471	236527830	+	0	NA	intron (NM_201544, intron 2 of 9)	intron (NM_201544, intron 2 of 9)	-3142	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
72269	chr15	30685801	30686000	+	0	NA	intron (NR_038255, intron 1 of 3)	L2b|LINE|L2	27183	NR_038254	100288637		NR_038253	ENSG00000187951	LOC100288637	-	OTU deubiquitinase 7A pseudogene	pseudo
92166	chr17	7707251	7707550	+	0	NA	intron (NM_001406, intron 1 of 4)	intron (NM_001406, intron 1 of 4)	2198	NM_001406	1949		NM_001406	ENSG00000108947	EFNB3	EFL6|EPLG8|LERK8	ephrin B3	protein-coding
78667	chr15	94584621	94585230	+	0	NA	Intergenic	Intergenic	228995	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
91562	chr17	5077971	5079150	+	0	NA	promoter-TSS (NM_153018)	promoter-TSS (NM_153018)	93	NM_153018	124961		NM_153018	ENSG00000180787	ZFP3	ZNF752	ZFP3 zinc finger protein	protein-coding
209545	chr7	77222571	77223200	+	0	NA	intron (NM_020879, intron 2 of 18)	intron (NM_020879, intron 2 of 18)	-23066	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
58415	chr12	131916971	131917830	+	0	NA	intron (NM_003565, intron 21 of 27)	intron (NM_003565, intron 21 of 27)	-11876	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
19309	chr1	173196471	173196630	+	0	NA	intron (NM_003326, intron 1 of 2)	intron (NM_003326, intron 1 of 2)	8982	NM_001297562	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
215840	chr8	6835301	6835650	+	0	NA	promoter-TSS (NM_001289973)	promoter-TSS (NM_001289973)	49	NM_207411	389610		NM_207411	ENSG00000275591	XKR5	HARL2754|UNQ2754|XRG5A|XRG5BM	XK related 5	protein-coding
356	chr1	1014301	1015850	+	0	NA	TTS (NM_005101)	TTS (NM_005101)	1578	NM_005101	9636		NM_005101	ENSG00000187608	ISG15	G1P2|IFI15|IMD38|IP17|UCRP|hUCRP	ISG15 ubiquitin like modifier	protein-coding
68209	chr14	76894071	76894450	+	0	NA	Intergenic	Intergenic	-65378	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
150453	chr21	42493801	42494200	+	0	NA	intron (NM_080860, intron 1 of 8)	AluJr|SINE|Alu	2224	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
161211	chr3	39174721	39175250	+	0	NA	Intergenic	L2a|LINE|L2	17610	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
215375	chr7	157408521	157408850	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	-57546	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
5790	chr1	26541651	26543180	+	0	NA	promoter-TSS (NM_001330441)	promoter-TSS (NM_001330441)	-697	NM_001330441	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
113605	chr19	10295461	10296750	+	0	NA	intron (NM_003259, intron 10 of 10)	intron (NM_003259, intron 10 of 10)	6153	NM_003259	7087		NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	intercellular adhesion molecule 5	protein-coding
18703	chr1	167440401	167440750	+	0	NA	intron (NM_198053, intron 2 of 7)	intron (NM_198053, intron 2 of 7)	77954	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
224286	chr9	6425101	6425300	+	0	NA	intron (NR_046386, intron 2 of 16)	L1MC3|LINE|L1	12001	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
62607	chr13	100506071	100506980	+	0	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	-25510	NR_047686	100885777		NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
156348	chr22	40853921	40854600	+	0	NA	intron (NM_001278589, intron 1 of 11)	intron (NM_001278589, intron 1 of 11)	2379	NM_003932	6767		NM_003932	ENSG00000100380	ST13	AAG2|FAM10A1|FAM10A4|HIP|HOP|HSPABP|HSPABP1|P48|PRO0786|SNC6	ST13 Hsp70 interacting protein	protein-coding
191007	chr6	3073571	3074200	+	0	NA	intron (NM_001317061, intron 2 of 12)	intron (NM_001317061, intron 2 of 12)	5391	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
173903	chr4	25159841	25161450	+	0	NA	promoter-TSS (NM_016955)	promoter-TSS (NM_016955)	-27	NR_037934	285540		NR_037934		SEPSECS-AS1	-	SEPSECS antisense RNA 1 (head to head)	ncRNA
194687	chr6	33685371	33685880	+	0	NA	intron (NM_002224, intron 40 of 57)	intron (NM_002224, intron 40 of 57)	-12503	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
15726	chr1	151051701	151052500	+	0	NA	TTS (NM_017860)	TTS (NM_017860)	4349	NM_017860	54964		NM_017860	ENSG00000143443	C1orf56	MENT	chromosome 1 open reading frame 56	protein-coding
84744	chr16	30953321	30954380	+	0	NA	3' UTR (NM_152288, exon 2 of 2)	3' UTR (NM_152288, exon 2 of 2)	-3904	NM_014712	9739		NM_014712	ENSG00000099381	SETD1A	EPEDD|EPEO2|KMT2F|NEDSID|Set1|Set1A	SET domain containing 1A, histone lysine methyltransferase	protein-coding
45325	chr11	118202121	118203350	+	0	NA	intron (NR_104479, intron 5 of 8)	intron (NR_104479, intron 5 of 8)	10211	NM_001286571	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
64839	chr14	35155951	35156380	+	0	NA	intron (NM_001256678, intron 3 of 6)	intron (NM_001256678, intron 3 of 6)	33613	NM_001256679	9692		NM_014672	ENSG00000100890	PRORP	COXPD54|KIAA0391|MRPP3	protein only RNase P catalytic subunit	protein-coding
168281	chr3	141491621	141491880	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	4723	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
77600	chr15	85289621	85290130	+	0	NA	Intergenic	Intergenic	49524	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
237012	chrX	102494671	102494830	+	0	NA	Intergenic	MER76-int|LTR|ERVL	21989	NM_021992	11013		NM_021992	ENSG00000158164	TMSB15A	TMSB15|TMSB15B|TMSL8|TMSNB|Tb15|TbNB	thymosin beta 15A	protein-coding
113955	chr19	10764321	10765050	+	0	NA	intron (NM_001005362, intron 2 of 19)	L2|LINE|L2	-15569	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
181527	chr5	43060971	43061330	+	0	NA	intron (NR_104651, intron 2 of 2)	intron (NR_104651, intron 2 of 2)	5821	NR_034127	100132356		NM_175919		LOC100132356	-	uncharacterized LOC100132356	ncRNA
17812	chr1	159851551	159851650	+	0	NA	intron (NR_147123, intron 1 of 3)	intron (NR_147123, intron 1 of 3)	3437	NR_147124	284677		NM_001134233	ENSG00000188004	SNHG28	C1orf204|VSIG8-OT1	small nucleolar RNA host gene 28	ncRNA
93652	chr17	19189301	19189700	+	0	NA	TTS (NR_006881)	TTS (NR_006881)	745	NR_006881	780853		NR_006881		SNORD3C	RNU3-3|U3-3	small nucleolar RNA, C/D box 3C	snoRNA
209827	chr7	88221501	88221700	+	0	NA	intron (NM_001256892, intron 1 of 6)	intron (NM_001256892, intron 1 of 6)	-1516	NM_001256891	6717		NM_003130	ENSG00000075142	SRI	CP-22|CP22|SCN|V19	sorcin	protein-coding
139829	chr2	230419001	230419750	+	0	NA	intron (NM_001080391, intron 2 of 28)	MER44C|DNA|TcMar-Tigger	2619	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
99023	chr17	48840271	48840430	+	0	NA	intron (NM_001261395, intron 1 of 11)	AluJb|SINE|Alu	9315	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
174380	chr4	39026101	39026500	+	0	NA	intron (NM_001303228, intron 1 of 6)	FLAM_C|SINE|Alu	6109	NM_024943	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
173653	chr4	13543971	13544400	+	0	NA	exon (NM_001189, exon 1 of 2)	exon (NM_001189, exon 1 of 2)	323	NM_001189	579		NM_001189	ENSG00000109705	NKX3-2	BAPX1|NKX3.2|NKX3B|SMMD	NK3 homeobox 2	protein-coding
45473	chr11	118575921	118576300	+	0	NA	intron (NM_001142281, intron 1 of 8)	MIR3|SINE|MIR	3701	NM_001655	372		NM_001655	ENSG00000095139	ARCN1	COPD|SRMMD|SSMG	archain 1	protein-coding
11900	chr1	93304701	93304930	+	0	NA	Intergenic	Intergenic	40996	NR_034089	100131564		NR_034089		CCDC18-AS1	-	CCDC18 antisense RNA 1	ncRNA
25050	chr10	3775131	3776400	+	0	NA	TTS (NM_001160125)	TTS (NM_001160125)	9444	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
8256	chr1	39784871	39785030	+	0	NA	intron (NM_001720, intron 1 of 6)	MIR1_Amn|SINE|MIR	3915	NM_001720	656		NM_001720	ENSG00000116985	BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
185002	chr5	115179001	115179300	+	0	NA	intron (NM_001017398, intron 1 of 1)	CpG	1144	NM_001300752	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
121181	chr19	46491301	46492500	+	0	NA	3' UTR (NM_020709, exon 1 of 1)	3' UTR (NM_020709, exon 1 of 1)	3967	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
183738	chr5	81234521	81235250	+	0	NA	intron (NM_001099736, intron 1 of 9)	intron (NM_001099736, intron 1 of 9)	1563	NM_001099735	1160		NM_001825	ENSG00000131730	CKMT2	SMTCK	creatine kinase, mitochondrial 2	protein-coding
184258	chr5	96707121	96707730	+	0	NA	intron (NM_173060, intron 1 of 28)	AluSc|SINE|Alu	4765	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
51698	chr12	53182201	53182400	+	0	NA	intron (NM_001004304, intron 2 of 6)	intron (NM_001004304, intron 2 of 6)	-1375	NM_001244705	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
164610	chr3	66306121	66306400	+	0	NA	intron (NR_028475, intron 5 of 9)	AluSx3|SINE|Alu	85257	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
127063	chr2	37367801	37368330	+	0	NA	intron (NM_012413, intron 4 of 6)	intron (NM_012413, intron 4 of 6)	23435	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
190442	chr5	179845221	179845680	+	0	NA	intron (NM_016175, intron 3 of 6)	L1MEd|LINE|L1	13367	NM_016175	51149		NM_016175	ENSG00000161010	MRNIP	C5orf45	MRN complex interacting protein	protein-coding
128111	chr2	48145551	48145650	+	0	NA	Intergenic	L1MEd|LINE|L1	-168699	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
102112	chr17	75012251	75013830	+	0	NA	intron (NM_001303265, intron 1 of 5)	CpG	370	NM_001545	3396		NM_001545	ENSG00000167862	MRPL58	DS-1|DS1|ICT1|MRP-L58|mL62	mitochondrial ribosomal protein L58	protein-coding
75358	chr15	65533471	65533630	+	0	NA	intron (NM_016395, intron 1 of 10)	MER90|LTR|ERV1	3087	NM_016395	51495		NM_016395	ENSG00000074696	HACD3	B-IND1|BIND1|HSPC121|PTPLAD1	3-hydroxyacyl-CoA dehydratase 3	protein-coding
194719	chr6	33773821	33774350	+	0	NA	intron (NM_001348709, intron 8 of 8)	intron (NM_001348709, intron 8 of 8)	12857	NM_001143944	221496		NM_181336	ENSG00000161904	LEMD2	CTRCT42|LEM2|MARUPS|NET25|dJ482C21.1	LEM domain nuclear envelope protein 2	protein-coding
173754	chr4	16230001	16230480	+	0	NA	intron (NR_027697, intron 1 of 2)	intron (NR_027697, intron 1 of 2)	3577	NR_027696	202020		NM_152684	ENSG00000263327	TAPT1-AS1	-	TAPT1 antisense RNA 1 (head to head)	ncRNA
197766	chr6	87407821	87408830	+	0	NA	intron (NM_001031743, intron 1 of 12)	CpG	353	NM_001031743	154313		NM_178823	ENSG00000272514	CFAP206	C6orf165|dJ382I10.1	cilia and flagella associated protein 206	protein-coding
195522	chr6	37257051	37258470	+	0	NA	promoter-TSS (NM_145316)	promoter-TSS (NM_145316)	-12	NR_130108	55633		NM_017772	ENSG00000065491	TBC1D22B	C6orf197	TBC1 domain family member 22B	protein-coding
9925	chr1	54472501	54472700	+	0	NA	Intergenic	Intergenic	-66206	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
167586	chr3	129556471	129556830	+	0	NA	exon (NM_015103, exon 35 of 36)	exon (NM_015103, exon 35 of 36)	8265	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
162264	chr3	47295101	47296430	+	0	NA	intron (NM_025010, intron 1 of 9)	AluJr|SINE|Alu	12821	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
134966	chr2	152098851	152099400	+	0	NA	promoter-TSS (NM_001145798)	promoter-TSS (NM_001145798)	42	NM_001145798	785		NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
174234	chr4	37872401	37872680	+	0	NA	Intergenic	MIR|SINE|MIR	-18544	NM_015173	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
207917	chr7	50659671	50660700	+	0	NA	intron (NM_001371008, intron 4 of 15)	intron (NM_001371008, intron 4 of 15)	45116	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
168000	chr3	136786801	136787000	+	0	NA	Intergenic	Intergenic	-32119	NM_001097600	80723		NM_025246	ENSG00000168917	SLC35G2	TMEM22	solute carrier family 35 member G2	protein-coding
23656	chr1	231039121	231043000	+	0	NA	promoter-TSS (NM_198552)	promoter-TSS (NM_198552)	-806	NM_198552	375061		NM_198552	ENSG00000182118	FAM89A	C1orf153	family with sequence similarity 89 member A	protein-coding
137919	chr2	200962851	200964430	+	0	NA	promoter-TSS (NR_033915)	promoter-TSS (NR_033915)	20	NR_033915	4999		NM_006190	ENSG00000115942	ORC2	ORC2L	origin recognition complex subunit 2	protein-coding
113861	chr19	10651401	10651600	+	0	NA	TTS (NR_024333)	TTS (NR_024333)	2372	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
32558	chr10	103365551	103365800	+	0	NA	Intergenic	AluSp|SINE|Alu	-2301	NM_139052	6877		NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
190711	chr6	255451	256150	+	0	NA	Intergenic	Intergenic	-36257	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
227101	chr9	85739771	85740230	+	0	NA	intron (NM_001330701, intron 1 of 25)	AluSx|SINE|Alu	1954	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
217154	chr8	26088701	26089150	+	0	NA	Intergenic	Intergenic	-43512	NM_022659	64641		NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	EBF transcription factor 2	protein-coding
76089	chr15	72487701	72488380	+	0	NA	intron (NM_005744, intron 1 of 13)	AluJr|SINE|Alu	13710	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
108907	chr18	79430871	79431030	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	30651	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
224663	chr9	21039401	21039830	+	0	NA	Intergenic	Intergenic	-7975	NM_001321903	401494		NM_001010915	ENSG00000188921	HACD4	PTPLAD2	3-hydroxyacyl-CoA dehydratase 4	protein-coding
238909	chrX	154712351	154713290	+	0	NA	intron (NM_080612, intron 3 of 9)	intron (NM_080612, intron 3 of 9)	38257	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
88310	chr16	84175201	84176150	+	0	NA	intron (NM_178452, intron 10 of 11)	intron (NM_178452, intron 10 of 11)	11382	NM_001243160	9013		NM_005679	ENSG00000103168	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	TATA-box binding protein associated factor, RNA polymerase I subunit C	protein-coding
216744	chr8	22457721	22458200	+	0	NA	intron (NM_005605, intron 1 of 13)	AluSq2|SINE|Alu	16882	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
167978	chr3	136723401	136723800	+	0	NA	intron (NM_005862, intron 1 of 33)	SVA_D|Retroposon|SVA	28778	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
98799	chr17	48244251	48244930	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-49757	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
218028	chr8	38766921	38767530	+	0	NA	intron (NM_001352804, intron 1 of 10)	intron (NM_001352804, intron 1 of 10)	9950	NM_001352790	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
16787	chr1	155535921	155538030	+	0	NA	intron (NM_018489, intron 1 of 27)	AluY|SINE|Alu	-25067	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
204782	chr7	5614271	5614900	+	0	NA	Intergenic	Intergenic	21769	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
176195	chr4	83490671	83491150	+	0	NA	Intergenic	Intergenic	-5810	NM_001345962	84142		NM_139076	ENSG00000163322	ABRAXAS1	ABRA1|CCDC98|FAM175A	abraxas 1, BRCA1 A complex subunit	protein-coding
1528	chr1	3071051	3071150	+	0	NA	intron (NM_199454, intron 1 of 16)	CpG	1897	NM_199454	63976		NM_022114	ENSG00000142611	PRDM16	CMD1LL|KMT8F|LVNC8|MEL1|PFM13	PR/SET domain 16	protein-coding
112259	chr19	5788871	5789700	+	0	NA	exon (NM_020175, exon 3 of 13)	exon (NM_020175, exon 3 of 13)	1878	NM_020175	56931		NM_020175	ENSG00000141994	DUS3L	DUS3	dihydrouridine synthase 3 like	protein-coding
214446	chr7	150049901	150050100	+	0	NA	intron (NM_001351028, intron 6 of 9)	intron (NM_001351028, intron 6 of 9)	-2285	NR_147022	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
9977	chr1	54950401	54950880	+	0	NA	Intergenic	Intergenic	-29988	NM_182532	199964		NM_182532	ENSG00000143001	TMEM61	-	transmembrane protein 61	protein-coding
77479	chr15	84547701	84547950	+	0	NA	intron (NR_003661, intron 2 of 5)	intron (NR_003661, intron 2 of 5)	-22824	NR_038274	100506874		NR_038273		LINC00933	-	long intergenic non-protein coding RNA 933	ncRNA
143842	chr20	32522601	32523730	+	0	NA	intron (NM_001256798, intron 2 of 10)	intron (NM_001256798, intron 2 of 10)	13206	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
863	chr1	1621471	1621630	+	0	NA	intron (NM_001170687, intron 2 of 19)	intron (NM_001170687, intron 2 of 19)	5695	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
113367	chr19	8750671	8751300	+	0	NA	Intergenic	Intergenic	20031	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
162786	chr3	49095771	49096450	+	0	NA	intron (NM_001272073, intron 23 of 23)	intron (NM_001272073, intron 23 of 23)	-1737	NM_001320585	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
197284	chr6	70884321	70884680	+	0	NA	intron (NM_080742, intron 2 of 3)	L2c|LINE|L2	72560	NM_080742	135152		NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
192566	chr6	25556451	25556750	+	0	NA	intron (NM_001173977, intron 28 of 36)	intron (NM_001173977, intron 28 of 36)	-95615	NM_006998	10590		NM_006998	ENSG00000079689	SCGN	CALBL|DJ501N12.8|SECRET|SEGN|setagin	secretagogin, EF-hand calcium binding protein	protein-coding
238659	chrX	154017551	154018800	+	0	NA	intron (NM_001025242, intron 6 of 13)	intron (NM_001025242, intron 6 of 13)	1727	NM_001025242	3654		NM_001569	ENSG00000184216	IRAK1	IRAK|pelle	interleukin 1 receptor associated kinase 1	protein-coding
108657	chr18	76740401	76740730	+	0	NA	Intergenic	Intergenic	50536	NR_122073	400661		NR_122073	ENSG00000276397	LINC01879	-	long intergenic non-protein coding RNA 1879	ncRNA
42152	chr11	67727401	67728000	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-46476	NM_001031615	222		NM_000695	ENSG00000132746	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family member B2	protein-coding
9349	chr1	46718551	46719750	+	0	NA	promoter-TSS (NM_014774)	promoter-TSS (NM_014774)	-36	NM_014774	9813		NM_014774	ENSG00000159658	EFCAB14	KIAA0494	EF-hand calcium binding domain 14	protein-coding
41556	chr11	66320921	66321180	+	0	NA	Intergenic	L1PA4|LINE|L1	-4006	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
96173	chr17	39722651	39722950	+	0	NA	intron (NM_001382797, intron 16 of 25)	AluSx3|SINE|Alu	-3695	NR_039881	100616132		NR_039881	ENSG00000265178	MIR4728	-	microRNA 4728	ncRNA
24106	chr1	235503851	235505460	+	0	NA	promoter-TSS (NM_001277155)	promoter-TSS (NM_001277155)	-203	NM_152490	148789		NM_152490	ENSG00000162885	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
71857	chr15	22258821	22259080	+	0	NA	intron (NR_033735, intron 1 of 2)	CpG-7952	336	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
93917	chr17	21289551	21289650	+	0	NA	intron (NM_002756, intron 1 of 11)	intron (NM_002756, intron 1 of 11)	1564	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
138002	chr2	201260151	201260900	+	0	NA	promoter-TSS (NM_001372051)	promoter-TSS (NM_001372051)	-11	NM_001372051	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
216643	chr8	22116871	22117130	+	0	NA	exon (NM_005144, exon 17 of 19)	exon (NM_005144, exon 17 of 19)	-7581	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
40304	chr11	63877971	63878330	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	-10387	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
224764	chr9	21976451	21976750	+	0	NA	intron (NM_001363763, intron 1 of 2)	AluSq2|SINE|Alu	-1743	NM_058197	1029		NM_000077	ENSG00000147889	CDKN2A	ARF|CAI2|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
235270	chrX	41798201	41798750	+	0	NA	intron (NM_001126055, intron 2 of 24)	MIR|SINE|MIR	74294	NM_080817	27197		NM_080817	ENSG00000171657	GPR82	-	G protein-coupled receptor 82	protein-coding
177637	chr4	121213901	121214580	+	0	NA	intron (NM_001128843, intron 2 of 12)	intron (NM_001128843, intron 2 of 12)	2387	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
69326	chr14	93319921	93320180	+	0	NA	intron (NM_018167, intron 1 of 3).2	intron (NM_018167, intron 1 of 3).2	12986	NM_018167	55727		NM_018167	ENSG00000011114	BTBD7	FUP1	BTB domain containing 7	protein-coding
28463	chr10	49263671	49263830	+	0	NA	Intergenic	AluJb|SINE|Alu	35143	NR_108038	100506769		NR_108038		C10orf71-AS1	-	C10orf71 antisense RNA 1	ncRNA
191834	chr6	14861321	14861780	+	0	NA	Intergenic	LTR79|LTR|ERVL	-384519	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
56960	chr12	120528751	120530130	+	0	NA	promoter-TSS (NM_032314)	promoter-TSS (NM_032314)	-282	NM_032314	84274		NM_032314	ENSG00000110871	COQ5	COQ10D9	coenzyme Q5, methyltransferase	protein-coding
220152	chr8	94948801	94950680	+	0	NA	promoter-TSS (NM_001135733)	promoter-TSS (NM_001135733)	180	NR_148909	137682		NM_152416	ENSG00000156170	NDUFAF6	C8orf38|FRTS5|MC1DN17	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein-coding
101759	chr17	72617501	72618500	+	0	NA	intron (NR_033876, intron 3 of 4)	intron (NR_033876, intron 3 of 4)	22472	NR_033876	400619		NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
134612	chr2	144386601	144386800	+	0	NA	3' UTR (NM_001171653, exon 9 of 9)	3' UTR (NM_001171653, exon 9 of 9)	-53631	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
82926	chr16	21822101	21822380	+	0	NA	Intergenic	AluJo|SINE|Alu	-1755	NM_001301064	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
231757	chr9	132231521	132231780	+	0	NA	intron (NM_032536, intron 5 of 7)	intron (NM_032536, intron 5 of 7)	69592	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
209321	chr7	76163721	76164180	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-37946	NM_001291831	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
179439	chr4	184397001	184397200	+	0	NA	intron (NM_002199, intron 7 of 8)	intron (NM_002199, intron 7 of 8)	-14794	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
31022	chr10	88827251	88827350	+	0	NA	intron (NM_144590, intron 3 of 5)	intron (NM_144590, intron 3 of 5)	24544	NM_144590	118932		NM_144590	ENSG00000152766	ANKRD22	-	ankyrin repeat domain 22	protein-coding
94102	chr17	27794801	27795080	+	0	NA	intron (NM_000625, intron 2 of 26)	intron (NM_000625, intron 2 of 26)	5589	NM_000625	4843		NM_000625	ENSG00000007171	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2	protein-coding
197330	chr6	73390051	73390150	+	0	NA	Intergenic	AluSz|SINE|Alu	-4728	NM_018665	55510		NM_018665	ENSG00000080007	DDX43	CT13|HAGE	DEAD-box helicase 43	protein-coding
7666	chr1	35718251	35719600	+	0	NA	promoter-TSS (NM_152374)	promoter-TSS (NM_152374)	-41	NM_152374	127703		NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
38338	chr11	44559371	44560130	+	0	NA	Intergenic	Intergenic	-5913	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
152874	chr22	22557801	22558400	+	0	NA	promoter-TSS (NM_001291716)	promoter-TSS (NM_001291716)	-468	NM_001291719	23532		NM_006115	ENSG00000185686	PRAME	CT130|MAPE|OIP-4|OIP4	PRAME nuclear receptor transcriptional regulator	protein-coding
6182	chr1	27438021	27438480	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	45628	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
226466	chr9	71737771	71737930	+	0	NA	intron (NM_013390, intron 5 of 23)	(AAT)n|Simple_repeat|Simple_repeat	30663	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
202960	chr6	161229201	161229600	+	0	NA	intron (NM_020133, intron 2 of 8)	intron (NM_020133, intron 2 of 8)	44661	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
56995	chr12	120569871	120570750	+	0	NA	intron (NM_001330474, intron 13 of 16)	AluSx1|SINE|Alu	11088	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
58632	chr12	132503671	132504280	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	-1431	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
147724	chr20	62384901	62385100	+	0	NA	Intergenic	AluSg|SINE|Alu	-2103	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
160352	chr3	27731171	27731330	+	0	NA	Intergenic	Intergenic	-8535	NM_001278183	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
19107	chr1	171492271	171492930	+	0	NA	intron (NM_015172, intron 1 of 33)	7SLRNA|srpRNA|srpRNA	7070	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
132856	chr2	110874151	110874450	+	0	NA	intron (NM_001371254, intron 10 of 18)	intron (NM_001371254, intron 10 of 18)	141727	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
235543	chrX	47238121	47238380	+	0	NA	intron (NM_001371072, intron 1 of 20)	AluSx|SINE|Alu	5241	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
2192	chr1	8590951	8591050	+	0	NA	intron (NM_012102, intron 5 of 23)	intron (NM_012102, intron 5 of 23)	-96087	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
129405	chr2	68911121	68911830	+	0	NA	Intergenic	Intergenic	-40078	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
183390	chr5	77648051	77648150	+	0	NA	Intergenic	Intergenic	-9387	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
119077	chr19	39198051	39198350	+	0	NA	intron (NM_001001414, intron 2 of 5)	intron (NM_001001414, intron 2 of 5)	1236	NM_001001414	342897		NM_001001414	ENSG00000188505	NCCRP1	FBXO50|NCCRP-1	NCCRP1, F-box associated domain containing	protein-coding
15203	chr1	149284771	149284930	+	0	NA	Intergenic	Intergenic	-53433	NR_158171	100996716		NR_158171		SEC22B2P	CH17-189H20.1|SEC22B2	SEC22 homolog B2, pseudogene	pseudo
230423	chr9	128135771	128135930	+	0	NA	Intergenic	Intergenic	7321	NR_024425	389791		NM_001013652	ENSG00000232850	PTGES2-AS1	-	PTGES2 antisense RNA 1 (head to head)	ncRNA
39563	chr11	61128771	61129080	+	0	NA	Intergenic	Intergenic	26436	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
18226	chr1	161032771	161033130	+	0	NA	Intergenic	L2c|LINE|L2	6014	NM_001113207	100131187		NM_001113205	ENSG00000215845	TSTD1	KAT|TST	thiosulfate sulfurtransferase like domain containing 1	protein-coding
205456	chr7	17162751	17163050	+	0	NA	Intergenic	L1PA4|LINE|L1	-135752	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
103700	chr17	78818751	78820080	+	0	NA	intron (NR_169585, intron 9 of 19)	AluSx|SINE|Alu	21399	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
65709	chr14	52794751	52795050	+	0	NA	Intergenic	AluSc|SINE|Alu	-3293	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
226498	chr9	71773601	71773800	+	0	NA	Intergenic	Intergenic	-5187	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
61701	chr13	74068501	74068900	+	0	NA	intron (NM_007249, intron 1 of 7)	AluSz|SINE|Alu	65229	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
210471	chr7	100150871	100151630	+	0	NA	intron (NR_134530, intron 2 of 3)	AluSg|SINE|Alu	2272	NR_134530								
116729	chr19	18460321	18461000	+	0	NA	intron (NM_006532, intron 5 of 11)	intron (NM_006532, intron 5 of 11)	-22527	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
79240	chr16	387901	388500	+	0	NA	intron (NR_024453, intron 2 of 2)	LTR5B|LTR|ERVK	5959	NR_024453	100134368		NR_024453	ENSG00000293232	LOC100134368	-	uncharacterized LOC100134368	ncRNA
219274	chr8	67435921	67436180	+	0	NA	intron (NM_020361, intron 8 of 10)	intron (NM_020361, intron 8 of 10)	92216	NR_136224	102724708		NR_136223		ARFGEF1-DT	-	ARFGEF1 divergent transcript	ncRNA
202648	chr6	158770001	158770480	+	0	NA	intron (NM_003379, intron 9 of 12)	intron (NM_003379, intron 9 of 12)	-5487	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
167034	chr3	126497121	126497380	+	0	NA	intron (NM_144639, intron 14 of 19)	intron (NM_144639, intron 14 of 19)	20523	NM_144639	131669		NM_144639	ENSG00000159650	UROC1	HMFN0320|UROCD	urocanate hydratase 1	protein-coding
45060	chr11	117055401	117055930	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	42763	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
124537	chr2	287471	288980	+	0	NA	promoter-TSS (NM_001002919)	promoter-TSS (NM_001002919)	-134	NM_001002919	285016		NM_001002919	ENSG00000189292	ALKAL2	AUGA|FAM150B|PRO1097|RGPG542	ALK and LTK ligand 2	protein-coding
167301	chr3	128679251	128679800	+	0	NA	Intergenic	MIR|SINE|MIR	-28707	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
53942	chr12	71837971	71838380	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	-1584	NM_001146214	64786		NM_022771	ENSG00000121749	TBC1D15	RAB7-GAP	TBC1 domain family member 15	protein-coding
170203	chr3	184016971	184018330	+	0	NA	intron (NM_001320032, intron 1 of 29)	CpG	234	NR_135125	10057		NM_005688	ENSG00000114770	ABCC5	ABC33|EST277145|MOAT-C|MOATC|MRP5|SMRP|pABC11	ATP binding cassette subfamily C member 5	protein-coding
147623	chr20	62145451	62145550	+	0	NA	intron (NM_198935, intron 1 of 10)	intron (NM_198935, intron 1 of 10)	1731	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
101931	chr17	74473051	74473350	+	0	NA	intron (NM_001256841, intron 1 of 5)	intron (NM_001256841, intron 1 of 5)	6566	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
122233	chr19	48992571	48995050	+	0	NA	promoter-TSS (NM_006666)	promoter-TSS (NM_006666)	-77	NM_001321190	10856		NM_006666	ENSG00000183207	RUVBL2	CGI-46|ECP-51|ECP51|INO80J|REPTIN|RVB2|TAP54-beta|TIH2|TIP48|TIP49B	RuvB like AAA ATPase 2	protein-coding
110255	chr19	1793071	1793230	+	0	NA	intron (NR_047593, intron 18 of 28)	AluJo|SINE|Alu	19126	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
81477	chr16	8919571	8920130	+	0	NA	intron (NR_135826, intron 5 of 30)	intron (NR_135826, intron 5 of 30)	16789	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
45095	chr11	117086401	117086880	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSx3|SINE|Alu	11788	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
74517	chr15	60395201	60395400	+	0	NA	intron (NM_001136015, intron 1 of 13)	L2a|LINE|L2	2686	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
47340	chr12	1820121	1820380	+	0	NA	promoter-TSS (NM_001163926)	promoter-TSS (NM_001163926)	-17	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
43666	chr11	85752301	85753930	+	0	NA	intron (NM_001365827, intron 1 of 17)	intron (NM_001365827, intron 1 of 17)	4954	NM_001162951	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
44816	chr11	113874451	113876450	+	0	NA	exon (NM_001346259, exon 1 of 23)	exon (NM_001346259, exon 1 of 23)	122	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
93725	chr17	19534551	19535000	+	0	NA	intron (NM_018242, intron 1 of 16)	intron (NM_018242, intron 1 of 16)	921	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
99393	chr17	49989271	49989630	+	0	NA	TTS (NM_005220)	TTS (NM_005220)	5774	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
192598	chr6	26002971	26003400	+	0	NA	Intergenic	Intergenic	14602	NM_005325	3024		NM_005325	ENSG00000124610	H1-1	H1.1|H1A|H1F1|HIST1|HIST1H1A	H1.1 linker histone, cluster member	protein-coding
87859	chr16	77193401	77193830	+	0	NA	exon (NM_014940, exon 3 of 6)	exon (NM_014940, exon 3 of 6)	2425	NM_001286639	22879		NM_014940	ENSG00000103111	MON1B	HSRG1|SAND2|SRG1	MON1 homolog B, secretory trafficking associated	protein-coding
90994	chr17	2749321	2750530	+	0	NA	promoter-TSS (NM_001355573)	promoter-TSS (NM_001355573)	-273	NM_001355573	101928991		NM_001355573	ENSG00000277200	CCDC92B	-	coiled-coil domain containing 92B	protein-coding
89172	chr16	88544901	88545500	+	0	NA	Intergenic	Intergenic	-14147	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
3847	chr1	16918551	16919100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3106	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
76955	chr15	78112821	78113680	+	0	NA	intron (NM_001271888, intron 1 of 4)	intron (NM_001271888, intron 1 of 4)	18195	NM_006383	10518		NM_006383	ENSG00000136425	CIB2	DFNB48|KIP2|USH1J	calcium and integrin binding family member 2	protein-coding
62808	chr13	109751801	109752400	+	0	NA	TTS (NM_003749)	TTS (NM_003749)	23826	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
42911	chr11	73386151	73386330	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	9572	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
178654	chr4	152456271	152456630	+	0	NA	intron (NM_001349798, intron 2 of 13)	AluJr|SINE|Alu	32966	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
183529	chr5	79857971	79858380	+	0	NA	Intergenic	Intergenic	-78404	NR_131226	105616916		NR_131226	ENSG00000250888	LINC01455	MDONA|TCONS_00009433	long intergenic non-protein coding RNA 1455	ncRNA
115414	chr19	15296601	15297880	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-16789	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
112883	chr19	7619671	7620250	+	0	NA	exon (NM_020196, exon 17 of 19)	exon (NM_020196, exon 17 of 19)	2521	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
155494	chr22	38569751	38571000	+	0	NA	promoter-TSS (NM_001363017)	promoter-TSS (NM_001363017)	-125	NR_134627	105373031		NR_134627		LOC105373031	-	uncharacterized LOC105373031	ncRNA
145764	chr20	45319271	45320130	+	0	NA	Intergenic	Intergenic	-11171	NM_003833	8785		NM_003833	ENSG00000124159	MATN4	-	matrilin 4	protein-coding
105290	chr17	82492221	82492480	+	0	NA	Intergenic	Intergenic	-27382	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
17241	chr1	156336221	156336680	+	0	NA	promoter-TSS (NM_144627)	promoter-TSS (NM_144627)	-864	NM_144627	128229		NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding
188638	chr5	157224521	157224980	+	0	NA	intron (NM_005546, intron 6 of 16)	AluSx1|SINE|Alu	-41373	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
23525	chr1	229129151	229129680	+	0	NA	Intergenic	Intergenic	45386	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
62101	chr13	94713471	94713630	+	0	NA	promoter-TSS (NR_158368)	promoter-TSS (NR_158368)	-107	NR_158368	112268114		NR_158368		LOC112268114	-	uncharacterized LOC112268114	ncRNA
33779	chr10	122989351	122989650	+	0	NA	intron (NM_153336, intron 6 of 6)	AluSx|SINE|Alu	9099	NM_153336	118672		NM_153336	ENSG00000179988	PSTK	C10orf89	phosphoseryl-tRNA kinase	protein-coding
181435	chr5	40831751	40832600	+	0	NA	TTS (NR_002583)	TTS (NR_002583)	560	NR_002583	619564		NR_002583	ENSG00000212296	SNORD72	HBII-240	small nucleolar RNA, C/D box 72	snoRNA
230231	chr9	127873421	127873930	+	0	NA	promoter-TSS (NM_001318122)	promoter-TSS (NM_001318122)	-195	NM_001318122	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
178904	chr4	158624901	158625200	+	0	NA	intron (NR_045579, intron 10 of 17)	intron (NR_045579, intron 10 of 17)	46837	NM_001008393	201725		NM_001008393	ENSG00000205208	C4orf46	RCDG1	chromosome 4 open reading frame 46	protein-coding
193009	chr6	28225021	28225730	+	0	NA	promoter-TSS (NM_006299)	promoter-TSS (NM_006299)	100	NM_006299	7746		NM_006299	ENSG00000137185	ZSCAN9	PRD51|ZNF193	zinc finger and SCAN domain containing 9	protein-coding
159313	chr3	13008971	13009930	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-22349	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
119393	chr19	40229601	40230000	+	0	NA	TTS (NM_001330511)	TTS (NM_001330511)	-3111	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
107733	chr18	50194801	50195300	+	0	NA	promoter-TSS (NM_001080467)	promoter-TSS (NM_001080467)	97	NM_001080467	4645		NM_001080467	ENSG00000167306	MYO5B	DIAR2|MVID1|PFIC10	myosin VB	protein-coding
4998	chr1	24384251	24384650	+	0	NA	intron (NM_178122, intron 2 of 7)	intron (NM_178122, intron 2 of 7)	-29037	NM_001322854	57185		NM_020448	ENSG00000001461	NIPAL3	DJ462O23.2|NPAL3|SLC57A5	NIPA like domain containing 3	protein-coding
39499	chr11	61028451	61029150	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	57120	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
166271	chr3	112474601	112474800	+	0	NA	intron (NM_181780, intron 2 of 4)	L2c|LINE|L2	24772	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
94094	chr17	27632301	27632500	+	0	NA	intron (NM_009587, intron 1 of 10)	intron (NM_009587, intron 1 of 10)	1212	NM_009587	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
145663	chr20	44965821	44967100	+	0	NA	promoter-TSS (NM_001352385)	promoter-TSS (NM_001352385)	-2	NR_038341	100505826		NR_038341	ENSG00000227477	STK4-DT	STK4-AS1	STK4 divergent transcript	ncRNA
161354	chr3	40455771	40455930	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1489	NM_003973	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
87696	chr16	74698071	74698830	+	0	NA	intron (NM_001142497, intron 1 of 5)	intron (NM_001142497, intron 1 of 5)	2412	NM_001142497	197259		NM_152649	ENSG00000168404	MLKL	hMLKL	mixed lineage kinase domain like pseudokinase	protein-coding
46928	chr11	134329551	134329730	+	0	NA	Intergenic	AluYm1|SINE|Alu	-2234	NM_138342	89944		NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	galactosidase beta 1 like 2	protein-coding
57944	chr12	123710571	123710730	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1703	NM_012463	23545		NM_012463	ENSG00000185344	ATP6V0A2	A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS|a2V	ATPase H+ transporting V0 subunit a2	protein-coding
51897	chr12	53617071	53617700	+	0	NA	intron (NR_159377, intron 1 of 14)	AluSx1|SINE|Alu	8605	NM_001366562	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
212515	chr7	128787601	128788000	+	0	NA	Intergenic	L1MEd|LINE|L1	-3638	NM_001367762	64753		NM_022742	ENSG00000128596	CCDC136	NAG6	coiled-coil domain containing 136	protein-coding
178753	chr4	153221821	153222500	+	0	NA	intron (NM_001375489, intron 1 of 12)	intron (NM_001375489, intron 1 of 12)	17717	NM_001375512	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
130307	chr2	84937721	84939000	+	0	NA	Intergenic	AluJr|SINE|Alu	32704	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
179876	chr5	611661	613350	+	0	NA	promoter-TSS (NR_103444)	promoter-TSS (NR_103444)	165	NM_018140	55722		NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72	protein-coding
239434	chrY	56696251	56696430	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-257915	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
218137	chr8	41653221	41654280	+	0	NA	3' UTR (NM_020480, exon 3 of 3)	3' UTR (NM_020480, exon 3 of 3)	-2933	NM_001364841	157848		NM_152568	ENSG00000165066	NKX6-3	NKX6.3	NK6 homeobox 3	protein-coding
200309	chr6	132891621	132891750	+	0	NA	Intergenic	AluYa5|SINE|Alu	74466	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
70683	chr14	103096671	103096830	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	-3394	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
8470	chr1	40795241	40796250	+	0	NA	intron (NM_172163, intron 1 of 12)	intron (NM_172163, intron 1 of 12)	11958	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
66543	chr14	61812371	61813030	+	0	NA	promoter-TSS (NM_001367661)	promoter-TSS (NM_001367661)	-3	NM_001367657	83851		NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r	synaptotagmin 16	protein-coding
11402	chr1	89694471	89695250	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	61740	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
118705	chr19	38215501	38215700	+	0	NA	intron (NM_001363579, intron 9 of 11)	AluJb|SINE|Alu	8622	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
173115	chr4	6546521	6546900	+	0	NA	intron (NM_001206994, intron 1 of 9)	intron (NM_001206994, intron 1 of 9)	8905	NM_001206995	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
83345	chr16	25031331	25032430	+	0	NA	non-coding (NR_038379, exon 1 of 1)	non-coding (NR_038379, exon 1 of 1)	139	NR_038379	554206		NR_038379	ENSG00000291179	LOC554206	-	leucine carboxyl methyltransferase 1 pseudogene	pseudo
167850	chr3	134217151	134217250	+	0	NA	intron (NM_001005861, intron 2 of 14)	LTR90B|LTR|LTR	33544	NM_001005861	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
156367	chr22	41024551	41024850	+	0	NA	Intergenic	AluSp|SINE|Alu	49021	NR_132979	106635682		NR_132979		SNORD140	-	small nucleolar RNA, C/D box 140	snoRNA
134809	chr2	148508971	148509790	+	0	NA	intron (NM_018328, intron 13 of 14)	intron (NM_018328, intron 13 of 14)	-135371	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
204807	chr7	5661901	5662600	+	0	NA	TTS (NR_046834)	TTS (NR_046834)	18211	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
122421	chr19	49452701	49454880	+	0	NA	intron (NM_001145396, intron 1 of 15)	intron (NM_001145396, intron 1 of 15)	565	NM_001145396	126133		NM_153329	ENSG00000161618	ALDH16A1	-	aldehyde dehydrogenase 16 family member A1	protein-coding
108422	chr18	69946771	69946930	+	0	NA	exon (NM_001303618, exon 2 of 6)	exon (NM_001303618, exon 2 of 6)	1023	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
107634	chr18	48947501	48947830	+	0	NA	intron (NM_005904, intron 2 of 3)	intron (NM_005904, intron 2 of 3)	1668	NM_001190822	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
229245	chr9	115013801	115014400	+	0	NA	Intergenic	Intergenic	-83505	NM_001252290	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
67036	chr14	67621171	67621330	+	0	NA	intron (NM_001172, intron 2 of 7)	intron (NM_001172, intron 2 of 7)	1330	NM_001172	384		NM_001172	ENSG00000081181	ARG2	-	arginase 2	protein-coding
150188	chr21	39310321	39310900	+	0	NA	intron (NM_033656, intron 4 of 40)	intron (NM_033656, intron 4 of 40)	3022	NM_033656	54014		NM_018963	ENSG00000185658	BRWD1	C21orf107|CILD51|DCAF19|N143|WDR9|WRD9	bromodomain and WD repeat domain containing 1	protein-coding
76437	chr15	74801851	74802680	+	0	NA	intron (NM_001127190, intron 13 of 13)	intron (NM_001127190, intron 13 of 13)	-10570	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
139410	chr2	222561801	222562030	+	0	NA	3' UTR (NM_001320834, exon 5 of 5)	3' UTR (NM_001320834, exon 5 of 5)	94177	NM_005687	10056		NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC|RILDBC1|RJBS	phenylalanyl-tRNA synthetase subunit beta	protein-coding
200003	chr6	128520101	128521230	+	0	NA	promoter-TSS (NM_001291983)	promoter-TSS (NM_001291983)	-66	NM_001291984	5796		NM_002844	ENSG00000152894	PTPRK	R-PTP-kappa	protein tyrosine phosphatase receptor type K	protein-coding
6671	chr1	29132551	29133050	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-8897	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
202305	chr6	157237271	157237600	+	0	NA	Intergenic	Intergenic	86084	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
168057	chr3	136955071	136955600	+	0	NA	Intergenic	Intergenic	-2648	NM_144717	53833		NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
10698	chr1	74763971	74764130	+	0	NA	non-coding (NR_027962, exon 6 of 6)	non-coding (NR_027962, exon 6 of 6)	-30642	NM_001130042	1429		NM_001889	ENSG00000116791	CRYZ	-	crystallin zeta	protein-coding
164917	chr3	71153001	71153200	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	-20903	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
210519	chr7	100220801	100222600	+	0	NA	TTS (NM_024070)	TTS (NM_024070)	2452	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
106888	chr18	24462121	24462780	+	0	NA	intron (NM_001143828, intron 1 of 1)	intron (NM_001143828, intron 1 of 1)	1813	NM_021624	59340		NM_021624	ENSG00000134489	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
211101	chr7	102505071	102505430	+	0	NA	intron (NM_001367767, intron 5 of 20)	intron (NM_001367767, intron 5 of 20)	12527	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
221154	chr8	119825301	119825900	+	0	NA	intron (NM_003184, intron 2 of 25)	THE1B|LTR|ERVL-MaLR	7241	NM_003184	6873		NM_003184	ENSG00000064313	TAF2	CIF150|MRT40|TAF2B|TAFII150	TATA-box binding protein associated factor 2	protein-coding
84821	chr16	31092151	31092450	+	0	NA	intron (NM_206824, intron 1 of 1)	AluJr4|SINE|Alu	2497	NM_024006	79001		NM_024006	ENSG00000167397	VKORC1	EDTP308|MST134|MST576|VKCFD2|VKOR	vitamin K epoxide reductase complex subunit 1	protein-coding
190832	chr6	1594921	1595450	+	0	NA	Intergenic	Intergenic	-10346	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
69113	chr14	92516901	92517850	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	3594	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
204586	chr7	5294851	5295430	+	0	NA	intron (NM_153247, intron 6 of 10)	intron (NM_153247, intron 6 of 10)	12197	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
41752	chr11	66685471	66685630	+	0	NA	3' UTR (NM_006946, exon 38 of 38)	3' UTR (NM_006946, exon 38 of 38)	-7663	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
226775	chr9	76530471	76530950	+	0	NA	Intergenic	ORSL|DNA|hAT-Tip100	30077	NM_001097636	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
162582	chr3	48680321	48680580	+	0	NA	intron (NM_184231, intron 5 of 12)	intron (NM_184231, intron 5 of 12)	5465	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
65217	chr14	49776201	49776400	+	0	NA	intron (NM_014315, intron 3 of 12)	intron (NM_014315, intron 3 of 12)	8147	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
84128	chr16	29691801	29692850	+	0	NA	intron (NM_001318249, intron 1 of 2)	AluY|SINE|Alu	13145	NR_134536	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
207610	chr7	44980431	44981700	+	0	NA	Intergenic	Intergenic	-2050	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
192762	chr6	26457171	26459380	+	0	NA	intron (NM_001197233, intron 1 of 6)	CpG	320	NM_078476	11120		NM_007049	ENSG00000112763	BTN2A1	BK14H9.1|BT2.1|BTF1|BTN2.1|DJ3E1.1	butyrophilin subfamily 2 member A1	protein-coding
75013	chr15	64029401	64030400	+	0	NA	intron (NM_001385000, intron 2 of 11)	intron (NM_001385000, intron 2 of 11)	16585	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
49903	chr12	39445151	39445450	+	0	NA	Intergenic	AluSz|SINE|Alu	-2180	NM_017641	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
234167	chrX	11755951	11756330	+	0	NA	Intergenic	MIR|SINE|MIR	-2019	NM_001282174	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
104169	chr17	80412671	80412830	+	0	NA	intron (NR_029376, intron 1 of 1)	Harlequin-int|LTR|ERV1	-2417	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
107116	chr18	35067551	35068050	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	26387	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
54000	chr12	75437571	75437930	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-43005	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
18514	chr1	161771101	161771600	+	0	NA	intron (NM_007348, intron 1 of 15)	L2|LINE|L2	5030	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
219992	chr8	89974651	89975350	+	0	NA	intron (NM_001024688, intron 6 of 16)	Kanga2_a|DNA|TcMar-Tc2	9667	NM_002485	4683		NM_002485	ENSG00000104320	NBN	AT-V1|AT-V2|ATV|NBS|NBS1|P95	nibrin	protein-coding
114206	chr19	11433451	11434000	+	0	NA	intron (NM_001302453, intron 1 of 12)	AluJo|SINE|Alu	1396	NM_001302454	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
215430	chr7	157683701	157683900	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	-109378	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
119142	chr19	39378471	39379300	+	0	NA	intron (NM_001384588, intron 10 of 13)	AluY|SINE|Alu	12221	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
86392	chr16	66650701	66651380	+	0	NA	intron (NM_178818, intron 1 of 4)	intron (NM_178818, intron 1 of 4)	45703	NM_181521	146223		NM_178818	ENSG00000183723	CMTM4	CKLFSF4	CKLF like MARVEL transmembrane domain containing 4	protein-coding
78161	chr15	90421321	90421830	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	33333	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
28599	chr10	55899921	55900180	+	0	NA	Intergenic	L1PA3|LINE|L1	-272108	NM_001354404	65217		NM_033056	ENSG00000150275	PCDH15	CDHR15|DFNB23|USH1F	protocadherin related 15	protein-coding
236925	chrX	96684151	96686030	+	0	NA	exon (NM_006729, exon 1 of 27)	exon (NM_006729, exon 1 of 27)	248	NM_006729	1730		NM_006729	ENSG00000147202	DIAPH2	DIA|DIA2|DRF2|POF|POF2|POF2A	diaphanous related formin 2	protein-coding
137780	chr2	199464871	199465030	+	0	NA	5' UTR (NM_001172517, exon 1 of 12)	5' UTR (NM_001172517, exon 1 of 12)	158	NM_001172517	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
7060	chr1	31982001	31983130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-31303	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
194980	chr6	35351351	35351650	+	0	NA	intron (NM_001171819, intron 2 of 6)	Charlie1a|DNA|hAT-Charlie	8942	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
85100	chr16	33656101	33656700	+	0	NA	Intergenic	Intergenic	-112977	NR_130771	104644205		NR_130771		ENPP7P13	DUNQU1	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13	pseudo
186310	chr5	134577671	134578580	+	0	NA	intron (NM_001289985, intron 11 of 11)	MER45A|DNA|hAT-Tip100	52017	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
55028	chr12	96385071	96385630	+	0	NA	intron (NM_002595, intron 1 of 16)	L1PA16|LINE|L1	15089	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
84783	chr16	31010071	31011300	+	0	NA	promoter-TSS (NM_052874)	promoter-TSS (NM_052874)	-47	NM_052874	112755		NM_052874	ENSG00000099365	STX1B	GEFSP9|STX1B1|STX1B2	syntaxin 1B	protein-coding
223685	chr8	144414821	144415530	+	0	NA	intron (NM_001374839, intron 2 of 10)	intron (NM_001374839, intron 2 of 10)	1274	NM_017767	55630		NM_017767	ENSG00000147804	SLC39A4	AEZ|AWMS2|ZIP4	solute carrier family 39 member 4	protein-coding
85468	chr16	50679871	50680030	+	0	NA	intron (NM_001144972, intron 1 of 3)	intron (NM_001144972, intron 1 of 3)	1362	NM_182854	124460		NM_153337	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
97215	chr17	42779671	42779830	+	0	NA	promoter-TSS (NM_001321299)	promoter-TSS (NM_001321299)	-860	NM_001321299	65266		NM_032387	ENSG00000126562	WNK4	PHA2B|PRKWNK4	WNK lysine deficient protein kinase 4	protein-coding
169741	chr3	172513371	172514030	+	0	NA	intron (NM_003810, intron 2 of 4)	Tigger16b|DNA|TcMar-Tigger	9730	NM_001190943	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
46364	chr11	126194101	126194310	+	0	NA	Intergenic	Intergenic	17445	NM_032795	84881		NM_032795	ENSG00000165526	RPUSD4	-	RNA pseudouridine synthase D4	protein-coding
3545	chr1	16126251	16126350	+	0	NA	intron (NM_004431, intron 16 of 16)	intron (NM_004431, intron 16 of 16)	29769	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
78868	chr15	100544321	100544780	+	0	NA	promoter-TSS (NM_001290342)	promoter-TSS (NM_001290342)	133	NM_178842	204219		NM_178842	ENSG00000154227	CERS3	ARCI9|LASS3	ceramide synthase 3	protein-coding
22908	chr1	225887371	225887730	+	0	NA	exon (NM_020997, exon 3 of 4)	exon (NM_020997, exon 3 of 4)	1596	NM_020997	10637		NM_020997	ENSG00000243709	LEFTY1	LEFTB|LEFTYB	left-right determination factor 1	protein-coding
159019	chr3	10594901	10595180	+	0	NA	intron (NM_001353564, intron 1 of 20)	intron (NM_001353564, intron 1 of 20)	24921	NM_001353564	491		NM_001683	ENSG00000157087	ATP2B2	DFNA82|PMCA2|PMCA2a|PMCA2i	ATPase plasma membrane Ca2+ transporting 2	protein-coding
119099	chr19	39319121	39319730	+	0	NA	intron (NM_020862, intron 1 of 4)	intron (NM_020862, intron 1 of 4)	1438	NM_020862	57622		NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
223418	chr8	143943501	143944700	+	0	NA	promoter-TSS (NM_201382)	promoter-TSS (NM_201382)	-115	NM_201382	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
232016	chr9	133363321	133363580	+	0	NA	3' UTR (NM_001280789, exon 6 of 6).2	3' UTR (NM_001280789, exon 6 of 6).2	6900	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
193303	chr6	30095921	30096630	+	0	NA	Intergenic	AluYm1|SINE|Alu	-8965	NR_126470	104533120		NR_126470	ENSG00000231226	TRIM31-AS1	-	TRIM31 antisense RNA 1	ncRNA
30528	chr10	79361671	79362030	+	0	NA	Intergenic	L1MB8|LINE|L1	14381	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
153729	chr22	29302651	29303100	+	0	NA	Intergenic	Intergenic	-4148	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
2957	chr1	11912901	11913300	+	0	NA	Intergenic	LTR13A|LTR|ERVK	4946	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
191050	chr6	3252971	3253130	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-5897	NM_001135750	389362		NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
50900	chr12	49283671	49284050	+	0	NA	Intergenic	Intergenic	-11287	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
36477	chr11	6233021	6233280	+	0	NA	intron (NM_001098794, intron 1 of 11)	intron (NM_001098794, intron 1 of 11)	1486	NM_032127	84067		NM_032127	ENSG00000051009	FHIP1B	C11orf56|FAM160A2|FHIP	FHF complex subunit HOOK interacting protein 1B	protein-coding
15522	chr1	150510351	150510650	+	0	NA	intron (NM_022664, intron 5 of 8)	intron (NM_022664, intron 5 of 8)	2391	NM_004425	1893		NM_004425	ENSG00000143369	ECM1	URBWD	extracellular matrix protein 1	protein-coding
231700	chr9	131720301	131720610	+	0	NA	intron (NM_001377935, intron 1 of 26)	MER5A|DNA|hAT-Charlie	-10613	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
53440	chr12	65172721	65173100	+	0	NA	intron (NM_001167614, intron 1 of 12)	AluSc|SINE|Alu	3327	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
94324	chr17	28777171	28777580	+	0	NA	intron (NM_001288636, intron 3 of 5)	intron (NM_001288636, intron 3 of 5)	33364	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
132580	chr2	106511471	106512300	+	0	NA	TTS (NM_001349727)	TTS (NM_001349727)	24521	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
177930	chr4	132944671	132944830	+	0	NA	Intergenic	L1PA2|LINE|L1	204366	NR_125885	101927359		NR_125885	ENSG00000250241	PCDH10-DT	-	PCDH10 divergent transcript	ncRNA
18135	chr1	160744151	160744850	+	0	NA	intron (NM_001282590, intron 1 of 5)	intron (NM_001282590, intron 1 of 5)	5253	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
214497	chr7	150447551	150447900	+	0	NA	non-coding (NR_034033, exon 4 of 4)	non-coding (NR_034033, exon 4 of 4)	-2905	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
191444	chr6	10683721	10683980	+	0	NA	intron (NR_148870, intron 2 of 3).2	intron (NR_148870, intron 2 of 3).2	10759	NM_001145020	347744		NM_001145020	ENSG00000137434	C6orf52	-	chromosome 6 open reading frame 52	protein-coding
149161	chr21	17808121	17808750	+	0	NA	intron (NM_017447, intron 2 of 4)	MSTA-int|LTR|ERVL-MaLR	10921	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
47019	chr12	366921	367380	+	0	NA	intron (NM_001042603, intron 3 of 27)	intron (NM_001042603, intron 3 of 27)	22170	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
159160	chr3	12798121	12798800	+	0	NA	intron (NM_012298, intron 1 of 12)	L2c|LINE|L2	1780	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
37087	chr11	13055171	13055530	+	0	NA	Intergenic	Intergenic	46034	NM_001080521	644943		NM_001080521	ENSG00000189431	RASSF10	-	Ras association domain family member 10	protein-coding
218269	chr8	42255251	42255830	+	0	NA	intron (NR_125823, intron 2 of 2)	MER31-int|LTR|ERV1	15421	NR_125823	101929897		NR_125823	ENSG00000253408	IKBKB-DT	ALAL-1|IKBKBAS	IKBKB divergent transcript	ncRNA
97654	chr17	44205301	44205580	+	0	NA	non-coding (NR_045058, exon 21 of 21)	non-coding (NR_045058, exon 21 of 21)	2399	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
179849	chr5	502251	502550	+	0	NA	intron (NM_001284351, intron 1 of 16)	intron (NM_001284351, intron 1 of 16)	22049	NM_001284351	6550		NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
84056	chr16	29583971	29584600	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSc|SINE|Alu	10807	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
169412	chr3	160980901	160981500	+	0	NA	intron (NM_139245, intron 2 of 3)	MLT1F|LTR|ERVL-MaLR	110602	NR_134243	151742		NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
13814	chr1	117614051	117614530	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	8242	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
202667	chr6	158783721	158784330	+	0	NA	intron (NM_003379, intron 5 of 12)	intron (NM_003379, intron 5 of 12)	-19272	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
132669	chr2	108772951	108773750	+	0	NA	intron (NM_006267, intron 23 of 28)	AluSq2|SINE|Alu	-13400	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
14664	chr1	145773551	145773850	+	0	NA	intron (NM_014455, intron 3 of 8)	L1M4|LINE|L1	50395	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
40122	chr11	62824601	62825430	+	0	NA	intron (NM_001244666, intron 8 of 10)	intron (NM_001244666, intron 8 of 10)	7036	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
19601	chr1	179814501	179815600	+	0	NA	3' UTR (NM_001329717, exon 6 of 6)	3' UTR (NM_001329717, exon 6 of 6)	11126	NR_162130	113219451		NR_162130		MIR12116	-	microRNA 12116	ncRNA
225344	chr9	34642871	34643030	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-3639	NM_001258332	2592		NM_000155	ENSG00000213930	GALT	-	galactose-1-phosphate uridylyltransferase	protein-coding
197475	chr6	75526421	75526760	+	0	NA	Intergenic	Intergenic	-32790	NM_001300866	27145		NM_015687	ENSG00000118407	FILIP1	FILIP|NMDF	filamin A interacting protein 1	protein-coding
23899	chr1	234971021	234971810	+	0	NA	Intergenic	Intergenic	-7416	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
125023	chr2	9579921	9580300	+	0	NA	Intergenic	AluJb|SINE|Alu	-24280	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
55156	chr12	99717941	99718050	+	0	NA	intron (NM_001352186, intron 8 of 26)	AluY|SINE|Alu	70242	NM_153364	196472		NM_153364	ENSG00000180219	GARIN6	FAM71C	golgi associated RAB2 interactor family member 6	protein-coding
124425	chr19	58468771	58468930	+	0	NA	intron (NM_014347, intron 1 of 3)	intron (NM_014347, intron 1 of 3)	1770	NM_014347	25799		NM_014347	ENSG00000083812	ZNF324	ZF5128|ZNF324A	zinc finger protein 324	protein-coding
238898	chrX	154619301	154619730	+	0	NA	promoter-TSS (NM_001327).2	promoter-TSS (NM_001327).2	-223	NM_139250	246100		NM_139250	ENSG00000268651	CTAG1A	CT6.1|ESO1|LAGE-2|LAGE2A|NY-ESO-1	cancer/testis antigen 1A	protein-coding
111063	chr19	3135951	3136980	+	0	NA	exon (NM_002068, exon 1 of 7)	exon (NM_002068, exon 1 of 7)	432	NM_002068	2769		NM_002068	ENSG00000060558	GNA15	GNA16|HG1L	G protein subunit alpha 15	protein-coding
13037	chr1	111225451	111226750	+	0	NA	Intergenic	Intergenic	-1559	NM_001025197	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
8583	chr1	41380821	41381300	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	-5391	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
68925	chr14	91373401	91374310	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	43965	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
208106	chr7	56843951	56844090	+	0	NA	Intergenic	L1PA3|LINE|L1	-31284	NR_130727	401357		NR_130727		LOC401357	-	uncharacterized LOC401357	ncRNA
108600	chr18	75227621	75227880	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	16953	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
26633	chr10	22477401	22477780	+	0	NA	Intergenic	CpG	-39661	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
100161	chr17	58615851	58616430	+	0	NA	intron (NM_198393, intron 7 of 32)	intron (NM_198393, intron 7 of 32)	-71812	NM_001368771	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
117181	chr19	19356901	19357600	+	0	NA	3' UTR (NM_015329, exon 19 of 19)	3' UTR (NM_015329, exon 19 of 19)	-28593	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
73739	chr15	45204971	45205580	+	0	NA	Intergenic	Intergenic	-4159	NM_138356	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
35692	chr11	1916571	1916930	+	0	NA	Intergenic	Intergenic	-2953	NM_001042781	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
233931	chrX	2265801	2266900	+	0	NA	intron (NM_145177, intron 5 of 6)	intron (NM_145177, intron 5 of 6)	234189	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
116538	chr19	18201771	18202330	+	0	NA	intron (NM_002866, intron 2 of 4)	AluJb|SINE|Alu	1992	NM_002866	5864		NM_002866	ENSG00000105649	RAB3A	-	RAB3A, member RAS oncogene family	protein-coding
80956	chr16	3869801	3870200	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	10120	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
197562	chr6	79657171	79657530	+	0	NA	intron (NM_031469, intron 1 of 3)	intron (NM_031469, intron 1 of 3)	26021	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
143432	chr20	30168071	30168530	+	0	NA	Intergenic	SST1|Satellite|centr	118237	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
73568	chr15	44430251	44430350	+	0	NA	intron (NM_016396, intron 1 of 12)	AluJr|SINE|Alu	2671	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
214836	chr7	151271801	151272630	+	0	NA	intron (NM_001003802, intron 2 of 13)	L4_A_Mam|LINE|RTE-X	4519	NM_001003802	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
195726	chr6	39215121	39215380	+	0	NA	intron (NM_003740, intron 1 of 4)	intron (NM_003740, intron 1 of 4)	14225	NM_003740	8645		NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding
204978	chr7	6386671	6387480	+	0	NA	intron (NM_018890, intron 1 of 6)	intron (NM_018890, intron 1 of 6)	12548	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
7843	chr1	36339271	36339830	+	0	NA	TTS (NM_001282546)	TTS (NM_001282546)	-15396	NM_018166	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
167782	chr3	133425471	133425630	+	0	NA	TTS (NR_135277)	TTS (NR_135277)	25494	NM_003571	8419		NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding
20487	chr1	198639881	198640700	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	1250	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
108950	chr18	79509071	79509430	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-70032	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
214511	chr7	150478151	150478250	+	0	NA	3' UTR (NM_175571, exon 5 of 5)	3' UTR (NM_175571, exon 5 of 5)	27570	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
104010	chr17	80107451	80108230	+	0	NA	exon (NM_001079804, exon 5 of 20)	exon (NM_001079804, exon 5 of 20)	6259	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
41272	chr11	65845551	65845850	+	0	NA	intron (NM_152760, intron 1 of 12)	AluSq2|SINE|Alu	11737	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
56462	chr12	116050471	116050630	+	0	NA	intron (NM_015335, intron 4 of 30)	intron (NM_015335, intron 4 of 30)	98104	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
12613	chr1	109091951	109092480	+	0	NA	intron (NR_136242, intron 2 of 3)	intron (NR_136242, intron 2 of 3)	1451	NR_136242	56900		NM_020141	ENSG00000215717	TMEM167B	AD-020|C1orf119	transmembrane protein 167B	protein-coding
130801	chr2	86942721	86943130	+	0	NA	intron (NM_001382344, intron 1 of 22)	CpG	807	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
86022	chr16	57487751	57488050	+	0	NA	Intergenic	Intergenic	-1407	NM_018110	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
68717	chr14	90757951	90759350	+	0	NA	intron (NM_001010854, intron 3 of 19)	CpG	57767	NM_001320421	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
4034	chr1	18946171	18946350	+	0	NA	intron (NM_001136265, intron 1 of 8)	MIRc|SINE|MIR	10416	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
146860	chr20	51456571	51457730	+	0	NA	intron (NM_173091, intron 5 of 9)	intron (NM_173091, intron 5 of 9)	-4173	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
217715	chr8	30157501	30158030	+	0	NA	intron (NM_006571, intron 1 of 6)	intron (NM_006571, intron 1 of 6)	1396	NM_006571	10671		NM_006571	ENSG00000104671	DCTN6	WS-3|WS3|p27	dynactin subunit 6	protein-coding
34711	chr10	133497401	133497600	+	0	NA	Intergenic	LTR13|LTR|ERVK	-29863	NM_000773	1571		NM_000773	ENSG00000130649	CYP2E1	CPE1|CYP2E|P450-J|P450C2E	cytochrome P450 family 2 subfamily E member 1	protein-coding
238866	chrX	154527021	154527850	+	0	NA	Intergenic	Intergenic	-11193	NM_001171134	60343		NM_021806	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	FAM3 metabolism regulating signaling molecule A	protein-coding
189117	chr5	170416271	170416630	+	0	NA	intron (NR_109899, intron 1 of 2)	intron (NR_109899, intron 1 of 2)	26957	NR_109899	101928033		NR_109899	ENSG00000253647	KCNIP1-OT1	CTD-2270F17.1	KCNIP1 overlapping transcript 1	ncRNA
111369	chr19	3697271	3697730	+	0	NA	intron (NM_001300849, intron 1 of 16)	(GGACCGAGCT)n|Simple_repeat|Simple_repeat	2968	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
55398	chr12	104466371	104466780	+	0	NA	intron (NM_018413, intron 1 of 2)	LTR67B|LTR|ERVL	9627	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
125329	chr2	10794171	10794530	+	0	NA	intron (NM_001282706, intron 5 of 13)	AluSx1|SINE|Alu	18435	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
97333	chr17	43268301	43268580	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1617	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
63999	chr14	22490221	22490850	+	0	NA	Intergenic	Intergenic	-7576	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
94968	chr17	32203401	32203630	+	0	NA	intron (NR_110083, intron 15 of 20)	AluJb|SINE|Alu	-51944	NR_002222	503640		NR_002222		ARGFXP2	-	arginine-fifty homeobox pseudogene 2	pseudo
155006	chr22	37328751	37329630	+	0	NA	Intergenic	Intergenic	25649	NR_110515	100506271		NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA
71658	chr14	106845501	106846080	+	0	NA	Intergenic	LTR76|LTR|ERV1	5209	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
204034	chr7	1933301	1933500	+	0	NA	intron (NM_001304524, intron 15 of 16)	HAL1|LINE|L1	7171	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
58176	chr12	124987701	124988290	+	0	NA	intron (NM_032656, intron 1 of 26)	AluSx1|SINE|Alu	1136	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
21762	chr1	206912371	206913000	+	0	NA	intron (NM_001193338, intron 3 of 6)	intron (NM_001193338, intron 3 of 6)	9256	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
28825	chr10	62368201	62368780	+	0	NA	intron (NR_104162, intron 1 of 3)	L2a|LINE|L2	-5667	NM_199450	22891		NM_014951	ENSG00000138311	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
135638	chr2	168242951	168243630	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	4305	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
156861	chr22	42073871	42075200	+	0	NA	intron (NM_001002034, intron 1 of 2)	CpG	287	NM_001002034	150368		NM_001002034	ENSG00000177096	PHETA2	FAM109B|IPIP27B|Ses2	PH domain containing endocytic trafficking adaptor 2	protein-coding
204301	chr7	2679121	2679850	+	0	NA	promoter-TSS (NM_133463)	promoter-TSS (NM_133463)	-37	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
17958	chr1	160428551	160429300	+	0	NA	TTS (NM_020335)	TTS (NM_020335)	28361	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
104237	chr17	80708451	80709050	+	0	NA	intron (NM_020761, intron 4 of 33)	intron (NM_020761, intron 4 of 33)	96882	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
313	chr1	975351	975450	+	0	NA	3' UTR (NM_032129, exon 16 of 16)	3' UTR (NM_032129, exon 16 of 16)	5773	NM_001369898	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
234239	chrX	13078171	13078330	+	0	NA	Intergenic	L2a|LINE|L2	-33630	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
88049	chr16	81449621	81450830	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	5055	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
145286	chr20	41030701	41031750	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	2403	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
186163	chr5	134185921	134186530	+	0	NA	Intergenic	L2a|LINE|L2	-9192	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
32445	chr10	102612871	102613580	+	0	NA	intron (NM_001178133, intron 8 of 10)	MIR3|SINE|MIR	-31254	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
219485	chr8	73858771	73859100	+	0	NA	intron (NR_073119, intron 1 of 5)	intron (NR_073119, intron 1 of 5)	19927	NR_073120	55284		NM_018299	ENSG00000104343	UBE2W	UBC-16|UBC16	ubiquitin conjugating enzyme E2 W	protein-coding
156605	chr22	41546571	41546730	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2044	NM_001282884	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
137852	chr2	200813971	200814850	+	0	NA	intron (NM_001321693, intron 2 of 10)	MER81|DNA|hAT-Blackjack	2024	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
113348	chr19	8658671	8658830	+	0	NA	intron (NM_001378601, intron 1 of 2)	L2b|LINE|L2	3173	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
103757	chr17	78933351	78934100	+	0	NA	Intergenic	Intergenic	-8338	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
233759	chrX	1398471	1398630	+	0	NA	intron (NR_130733, intron 1 of 2)	intron (NR_130733, intron 1 of 2)	1525	NR_130733	751580		NR_130733	ENSG00000236871	LINC00106	CXYorf8|NCRNA00106	long intergenic non-protein coding RNA 106	ncRNA
91766	chr17	6893821	6894330	+	0	NA	intron (NR_120453, intron 1 of 12)	intron (NR_120453, intron 1 of 12)	298	NR_120453	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
219618	chr8	80105401	80105600	+	0	NA	intron (NM_001287144, intron 1 of 5)	LTR2|LTR|ERV1	-24669	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
165144	chr3	71788451	71788750	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-3452	NM_021935	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
41625	chr11	66464851	66465300	+	0	NA	Intergenic	Intergenic	-1252	NM_001243135	246330		NM_145065	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
90068	chr16	89987351	89987530	+	0	NA	intron (NR_003227, intron 6 of 9)	intron (NR_003227, intron 6 of 9)	-14608	NM_145039	92806		NM_145039	ENSG00000293473	CENPBD1P	CENPBD1	CENPB DNA-binding domain containing 1, pseudogene	pseudo
102533	chr17	75821671	75823280	+	0	NA	intron (NM_001080419, intron 13 of 15)	intron (NM_001080419, intron 13 of 15)	21929	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
26354	chr10	15434121	15434750	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-63146	NM_001010924	221061		NM_001010924	ENSG00000148468	FAM171A1	APCN|C10orf38	family with sequence similarity 171 member A1	protein-coding
156955	chr22	42347001	42347200	+	0	NA	Intergenic	L2a|LINE|L2	22108	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
130665	chr2	86225571	86226100	+	0	NA	intron (NM_001371279, intron 7 of 8)	intron (NM_001371279, intron 7 of 8)	26378	NM_016622	51318		NM_016622	ENSG00000132313	MRPL35	L35mt|MRP-L35|bL35m	mitochondrial ribosomal protein L35	protein-coding
33259	chr10	114508821	114509280	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	17863	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
50930	chr12	49345071	49345800	+	0	NA	Intergenic	CpG	-1453	NM_024902	79962		NM_024902	ENSG00000178401	DNAJC22	wus	DnaJ heat shock protein family (Hsp40) member C22	protein-coding
14447	chr1	144406401	144406630	+	0	NA	Intergenic	Intergenic	-6061	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
191350	chr6	7140551	7141700	+	0	NA	intron (NM_001003698, intron 1 of 11)	CpG	33164	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
171907	chr4	828571	829500	+	0	NA	Intergenic	Intergenic	-2906	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
193003	chr6	28207571	28208250	+	0	NA	Intergenic	Intergenic	11019	NR_002936	222699		NR_002936		TOB2P1	TOB2P|TOB4p|p373c6.3	transducer of ERBB2, 2 pseudogene 1	pseudo
232316	chr9	134711871	134712230	+	0	NA	intron (NM_001278074, intron 4 of 65)	(CTCCTT)n|Simple_repeat|Simple_repeat	-59207	NR_138049	414316		NR_138049		COL5A1-AS1	C9orf104|bA54A22.4	COL5A1 antisense RNA 1	ncRNA
59417	chr13	25303351	25303850	+	0	NA	intron (NM_001008564, intron 1 of 14)	L2c|LINE|L2	1975	NM_001008564	9818		NM_014089	ENSG00000139496	NUP58	NUP45|NUPL1|PRO2463	nucleoporin 58	protein-coding
22938	chr1	225975821	225976730	+	0	NA	Intergenic	Intergenic	23068	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
107739	chr18	50280101	50280300	+	0	NA	intron (NM_001204143, intron 1 of 13)	intron (NM_001204143, intron 1 of 13)	1323	NM_001323949	4152		NM_002384	ENSG00000141644	MBD1	CXXC3|PCM1|RFT	methyl-CpG binding domain protein 1	protein-coding
119399	chr19	40233001	40234130	+	0	NA	3' UTR (NM_001330511, exon 12 of 12)	3' UTR (NM_001330511, exon 12 of 12)	-6876	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
237737	chrX	129352251	129352350	+	0	NA	Intergenic	L1PA5|LINE|L1	171190	NM_003069	6594		NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
159319	chr3	13016201	13016980	+	0	NA	intron (NM_001134382, intron 1 of 13)	L2a|LINE|L2	-29489	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
79665	chr16	1230721	1231480	+	0	NA	promoter-TSS (NM_024164)	promoter-TSS (NM_024164)	-916	NM_024164	64499		NM_024164	ENSG00000197253	TPSB2	TPS2|tryptaseB|tryptaseC	tryptase beta 2	protein-coding
5999	chr1	26998801	26999000	+	0	NA	intron (NM_001013642, intron 1 of 1)	intron (NM_001013642, intron 1 of 1)	5208	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
203832	chr7	1424901	1425100	+	0	NA	Intergenic	AluJr|SINE|Alu	34470	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
115487	chr19	15372771	15373350	+	0	NA	exon (NM_005858, exon 5 of 14)	exon (NM_005858, exon 5 of 14)	6727	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
6727	chr1	30192521	30192780	+	0	NA	Intergenic	Intergenic	-155038	NR_110790	101929406		NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
186010	chr5	133959301	133959700	+	0	NA	exon (NM_020199, exon 2 of 3)	exon (NM_020199, exon 2 of 3)	9125	NM_020199	56951		NM_020199	ENSG00000113583	C5orf15	HTGN29|KCT2	chromosome 5 open reading frame 15	protein-coding
225450	chr9	35109171	35109600	+	0	NA	intron (NM_025182, intron 1 of 8)	intron (NM_025182, intron 1 of 8)	2067	NM_001317991	80256		NM_025182	ENSG00000005238	ATOSB	FAM214B|KIAA1539	atos homolog B	protein-coding
63196	chr13	113788201	113788700	+	0	NA	intron (NM_001348663, intron 3 of 7)	intron (NM_001348663, intron 3 of 7)	-27160	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
173866	chr4	24419451	24419650	+	0	NA	intron (NR_148983, intron 1 of 15)	intron (NR_148983, intron 1 of 15)	53355	NM_001330751	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
137105	chr2	190979821	190980750	+	0	NA	intron (NM_139266, intron 19 of 22)	intron (NM_139266, intron 19 of 22)	33886	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
171657	chr3	197659721	197660030	+	0	NA	Intergenic	Intergenic	14701	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
58979	chr13	19926971	19927400	+	0	NA	Intergenic	Intergenic	-30238	NM_001353164	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
85130	chr16	34592471	34592950	+	0	NA	Intergenic	(TTCCATTCGAG)n|Simple_repeat|Simple_repeat	-211230	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
7063	chr1	31989321	31989850	+	0	NA	Intergenic	MIRb|SINE|MIR	-24283	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
28687	chr10	60777551	60777650	+	0	NA	promoter-TSS (NM_001170407)	promoter-TSS (NM_001170407)	-731	NM_001170406	983		NM_001786	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin dependent kinase 1	protein-coding
197854	chr6	88983651	88983900	+	0	NA	Intergenic	Intergenic	-20157	NM_001286428	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
183523	chr5	79702971	79703280	+	0	NA	intron (NM_153610, intron 1 of 12)	intron (NM_153610, intron 1 of 12)	13289	NM_153610	202333		NM_153610	ENSG00000164309	CMYA5	C5orf10|SPRYD2|TRIM76	cardiomyopathy associated 5	protein-coding
91010	chr17	2791421	2792100	+	0	NA	intron (NM_001330058, intron 1 of 24)	intron (NM_001330058, intron 1 of 24)	-4678	NM_001100398	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
79690	chr16	1278571	1278930	+	0	NA	Intergenic	Intergenic	22681	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
123706	chr19	55030651	55031150	+	0	NA	intron (NM_001083899, intron 3 of 7).8	AluJb|SINE|Alu	7364	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
22289	chr1	212791421	212792850	+	0	NA	promoter-TSS (NM_015471)	promoter-TSS (NM_015471)	241	NM_001042552	128387		NM_001042552	ENSG00000203705	TATDN3	-	TatD DNase domain containing 3	protein-coding
112889	chr19	7626071	7626630	+	0	NA	intron (NM_020196, intron 4 of 18)	intron (NM_020196, intron 4 of 18)	3195	NM_020196	56949		NM_020196	ENSG00000076924	XAB2	HCNP|HCRN|NTC90|SYF1	XPA binding protein 2	protein-coding
222998	chr8	143270651	143270750	+	0	NA	intron (NM_138465, intron 2 of 3)	intron (NM_138465, intron 2 of 3)	3255	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
74268	chr15	57146401	57146650	+	0	NA	intron (NM_207038, intron 5 of 19)	intron (NM_207038, intron 5 of 19)	-72905	NM_001306220	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
48524	chr12	10153221	10153900	+	0	NA	Intergenic	L1PA16|LINE|L1	-16953	NM_001384894	120939		NM_153022	ENSG00000165685	TMEM52B	C12orf59	transmembrane protein 52B	protein-coding
54030	chr12	75526821	75527180	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-15391	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
145580	chr20	44514171	44514530	+	0	NA	intron (NM_006811, intron 1 of 9)	MIR|SINE|MIR	7720	NM_006811	10955		NM_006811	ENSG00000132824	SERINC3	AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1	serine incorporator 3	protein-coding
88221	chr16	81860901	81861200	+	0	NA	intron (NM_002661, intron 5 of 32)	(AAAACC)n|Simple_repeat|Simple_repeat	81759	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
38546	chr11	45912221	45912630	+	0	NA	intron (NM_057174, intron 9 of 10)	AluY|SINE|Alu	-5154	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
122148	chr19	48869971	48870130	+	0	NA	Intergenic	AluYh3|SINE|Alu	-1433	NM_001161354	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
35118	chr11	688371	688530	+	0	NA	exon (NM_001293634, exon 3 of 11)	exon (NM_001293634, exon 3 of 11)	6772	NM_021008	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
96775	chr17	41780651	41780830	+	0	NA	intron (NM_001352776, intron 1 of 15)	intron (NM_001352776, intron 1 of 15)	5355	NM_001352777	3728		NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PG|PKGB	junction plakoglobin	protein-coding
134803	chr2	148023651	148024630	+	0	NA	intron (NM_018328, intron 2 of 14)	intron (NM_018328, intron 2 of 14)	-2536	NM_181742	5000		NM_002552	ENSG00000115947	ORC4	ORC4L|ORC4P	origin recognition complex subunit 4	protein-coding
61577	chr13	71879271	71879430	+	0	NA	Intergenic	Intergenic	-12146	NM_001366712	1602		NM_004392	ENSG00000276644	DACH1	DACH	dachshund family transcription factor 1	protein-coding
49933	chr12	39711251	39711350	+	0	NA	intron (NR_135051, intron 11 of 18)	(TA)n|Simple_repeat|Simple_repeat	85117	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
46059	chr11	122728671	122728830	+	0	NA	intron (NM_032873, intron 1 of 13)	L2a|LINE|L2	73028	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
96614	chr17	40555021	40555280	+	0	NA	exon (NM_001301716, exon 3 of 3)	exon (NM_001301716, exon 3 of 3)	5244	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
71586	chr14	106508321	106508880	+	0	NA	Intergenic	Intergenic	26161	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
145669	chr20	44978401	44980080	+	0	NA	intron (NM_006282, intron 3 of 10)	intron (NM_006282, intron 3 of 10)	12728	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
41887	chr11	67250271	67251250	+	0	NA	exon (NM_001256405, exon 6 of 10)	exon (NM_001256405, exon 6 of 10)	10746	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
35811	chr11	2214571	2214930	+	0	NA	Intergenic	Intergenic	41687	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
31819	chr10	99330121	99330380	+	0	NA	exon (NM_020348, exon 1 of 11)	exon (NM_020348, exon 1 of 11)	894	NM_020348	26507		NM_020348	ENSG00000119946	CNNM1	ACDP1|CLP-1	cyclin and CBS domain divalent metal cation transport mediator 1	protein-coding
52712	chr12	56591171	56591580	+	0	NA	3' UTR (NM_002898, exon 14 of 14)	3' UTR (NM_002898, exon 14 of 14)	38951	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
168357	chr3	141889621	141890180	+	0	NA	intron (NM_001679, intron 1 of 6)	L1ME3G|LINE|L1	13257	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
202005	chr6	152588301	152588500	+	0	NA	intron (NM_033071, intron 2 of 145)	L2c|LINE|L2	48451	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
72182	chr15	29267321	29268130	+	0	NA	3' UTR (NM_138704, exon 1 of 1)	3' UTR (NM_138704, exon 1 of 1)	2097	NM_138704	56160		NM_138704	ENSG00000185115	NSMCE3	HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3	NSE3 homolog, SMC5-SMC6 complex component	protein-coding
200303	chr6	132825571	132825930	+	0	NA	Intergenic	AluSx|SINE|Alu	8531	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
178759	chr4	153248451	153249600	+	0	NA	intron (NM_001375516, intron 2 of 12)	intron (NM_001375516, intron 2 of 12)	-8334	NM_001302694	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
155581	chr22	38746051	38747250	+	0	NA	intron (NM_001199580, intron 8 of 18)	MIRc|SINE|MIR	8816	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
211134	chr7	102538351	102538730	+	0	NA	intron (NM_001097615, intron 8 of 8)	intron (NM_001097615, intron 8 of 8)	6248	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
93123	chr17	17713851	17714150	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	32542	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
76407	chr15	74723951	74724550	+	0	NA	intron (NM_001319217, intron 1 of 6)	intron (NM_001319217, intron 1 of 6)	1278	NM_001319217	1543		NM_000499	ENSG00000140465	CYP1A1	AHH|AHRR|CP11|CYP1|CYPIA1|P1-450|P450-C|P450DX	cytochrome P450 family 1 subfamily A member 1	protein-coding
153624	chr22	28675271	28675750	+	0	NA	intron (NM_001145418, intron 1 of 22)	AluJb|SINE|Alu	4355	NM_001145418	23331		NM_015281	ENSG00000100154	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
218686	chr8	58411021	58412830	+	0	NA	intron (NR_156456, intron 1 of 8)	intron (NR_156456, intron 1 of 8)	564	NM_001077619	137886		NM_001077619	ENSG00000215114	UBXN2B	p37	UBX domain protein 2B	protein-coding
92747	chr17	14341021	14341430	+	0	NA	intron (NM_006041, intron 1 of 1)	intron (NM_006041, intron 1 of 1)	37485	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
67006	chr14	67464101	67464900	+	0	NA	Intergenic	L2c|LINE|L2	-22570	NR_049879	100847064		NR_049879	ENSG00000265993	MIR5694	-	microRNA 5694	ncRNA
107601	chr18	48915671	48915830	+	0	NA	Intergenic	Intergenic	27057	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
118180	chr19	35055551	35055980	+	0	NA	intron (NM_182983, intron 4 of 12)	intron (NM_182983, intron 4 of 12)	14044	NM_001384133	3249		NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
12921	chr1	110642921	110643330	+	0	NA	Intergenic	Intergenic	-11685	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
104163	chr17	80407701	80408100	+	0	NA	intron (NR_029376, intron 1 of 1)	LTR7B|LTR|ERV1	-7267	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
156067	chr22	40006351	40006650	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	11546	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
132286	chr2	105039401	105039800	+	0	NA	intron (NM_182640, intron 1 of 10)	intron (NM_182640, intron 1 of 10)	-1104	NR_110603	102724691		NR_110603	ENSG00000224509	MRPS9-AS2	-	MRPS9 antisense RNA 2	ncRNA
175544	chr4	74874771	74875030	+	0	NA	Intergenic	Intergenic	-58216	NM_015393	25849		NM_015393	ENSG00000169116	PARM1	Cipar1|DKFZP564O0823|PARM-1|WSC4	prostate androgen-regulated mucin-like protein 1	protein-coding
137564	chr2	197247671	197248000	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	49844	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
185781	chr5	132405451	132405750	+	0	NA	Intergenic	L1M4|LINE|L1	-5329	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
164984	chr3	71312671	71313030	+	0	NA	intron (NM_001349340, intron 3 of 19)	AluSz|SINE|Alu	-8079	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
149652	chr21	33550671	33551300	+	0	NA	TTS (NR_106756)	TTS (NR_106756)	323	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
11432	chr1	89759021	89759300	+	0	NA	Intergenic	Intergenic	-61872	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
27314	chr10	30496621	30497100	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	62214	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
186237	chr5	134402421	134402880	+	0	NA	3' UTR (NM_080656, exon 3 of 3)	3' UTR (NM_080656, exon 3 of 3)	9231	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
141191	chr2	239303251	239303350	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-2162	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
151190	chr21	45084971	45085580	+	0	NA	intron (NM_001346688, intron 1 of 11)	intron (NM_001346688, intron 1 of 11)	10224	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
111110	chr19	3210551	3211500	+	0	NA	Intergenic	Intergenic	-13636	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
8473	chr1	40799271	40799630	+	0	NA	intron (NM_172163, intron 1 of 12)	intron (NM_172163, intron 1 of 12)	15663	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
107951	chr18	58213601	58214000	+	0	NA	intron (NM_001144970, intron 1 of 28)	intron (NM_001144970, intron 1 of 28)	-7771	NM_001144966	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
211616	chr7	105924651	105925530	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-38174	NM_001301161	222256		NM_152750	ENSG00000128536	CDHR3	CDH28	cadherin related family member 3	protein-coding
200009	chr6	129280821	129281500	+	0	NA	intron (NM_000426, intron 18 of 64)	intron (NM_000426, intron 18 of 64)	398022	NM_001079823	3908		NM_000426	ENSG00000196569	LAMA2	LAMM|MDC1A	laminin subunit alpha 2	protein-coding
11254	chr1	89016351	89016650	+	0	NA	intron (NM_001319181, intron 2 of 9)	AluSc|SINE|Alu	6366	NM_018284	2635		NM_018284	ENSG00000117226	GBP3	-	guanylate binding protein 3	protein-coding
34559	chr10	133139921	133140180	+	0	NA	Intergenic	Intergenic	-20169	NM_001347864	85442		NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND	kinase non-catalytic C-lobe domain containing 1	protein-coding
166826	chr3	122794701	122795880	+	0	NA	exon (NM_032839, exon 1 of 9)	exon (NM_032839, exon 1 of 9)	221	NM_032839	84925		NM_032839	ENSG00000138463	SLC49A4	DIRC2|RCC4	solute carrier family 49 member 4	protein-coding
130007	chr2	74161501	74161700	+	0	NA	intron (NM_001317110, intron 4 of 5)	AluY|SINE|Alu	13619	NR_045636	100507171		NR_045634	ENSG00000225439	BOLA3-DT	BOLA3-AS1	BOLA3 divergent transcript	ncRNA
228157	chr9	96937921	96938330	+	0	NA	intron (NM_001045477, intron 6 of 6)	intron (NM_001045477, intron 6 of 6)	9282	NM_001045477	441457		NM_001024597	ENSG00000188152	NUTM2G	FAM22G|NUTMG	NUT family member 2G	protein-coding
210513	chr7	100212921	100213630	+	0	NA	intron (NR_028038, intron 5 of 6)	MLT1A0|LTR|ERVL-MaLR	-5973	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
239401	chrY	22888051	22888150	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	36516	NR_002180	474151		NR_002180	ENSG00000227439	TTTY17B	NCRNA00141	testis expressed transcript, Y-linked 17B	ncRNA
29446	chr10	70406771	70406930	+	0	NA	intron (NM_004096, intron 1 of 2)	intron (NM_004096, intron 1 of 2)	2705	NM_004096	1979		NM_004096	ENSG00000148730	EIF4EBP2	4EBP2|PHASII	eukaryotic translation initiation factor 4E binding protein 2	protein-coding
161054	chr3	38021701	38022300	+	0	NA	intron (NM_006225, intron 1 of 14)	intron (NM_006225, intron 1 of 14)	2520	NM_001130964	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
149902	chr21	36127001	36127200	+	0	NA	promoter-TSS (NR_040084)	promoter-TSS (NR_040084)	-460	NR_040084	100133286		NR_040084	ENSG00000230212	CBR1-AS1	-	CBR1 antisense RNA 1	ncRNA
170424	chr3	185631221	185632250	+	0	NA	3' UTR (NM_021627, exon 17 of 17)	3' UTR (NM_021627, exon 17 of 17)	45440	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
194278	chr6	32638521	32639000	+	0	NA	intron (NM_002122, intron 1 of 4)	GA-rich|Low_complexity|Low_complexity	1354	NM_002122	3117		NM_002122	ENSG00000196735	HLA-DQA1	CELIAC1|DQ-A1|DQA1|HLA-DQA|HLA-DQA1*|HLA-DQB1	major histocompatibility complex, class II, DQ alpha 1	protein-coding
179221	chr4	173527351	173527650	+	0	NA	intron (NM_021973, intron 1 of 1)	intron (NM_021973, intron 1 of 1)	-1100	NR_136197	79804		NR_003679	ENSG00000237125	HAND2-AS1	DEIN|NBLA00301|UPH	HAND2 antisense RNA 1	ncRNA
55959	chr12	110039171	110039800	+	0	NA	3' UTR (NM_033121, exon 15 of 15)	3' UTR (NM_033121, exon 15 of 15)	9162	NR_148516								
127228	chr2	38626371	38627080	+	0	NA	Intergenic	MLT2A2|LTR|ERVL	-23689	NM_001142650	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
51951	chr12	53748501	53749330	+	0	NA	Intergenic	Intergenic	2920	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
119093	chr19	39296321	39296780	+	0	NA	exon (NM_172140, exon 1 of 5)	exon (NM_172140, exon 1 of 5)	143	NM_172140	282618		NM_172140	ENSG00000182393	IFNL1	IL-29|IL29	interferon lambda 1	protein-coding
178931	chr4	158864021	158864280	+	0	NA	intron (NM_001366843, intron 13 of 17)	AluJb|SINE|Alu	58311	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
159013	chr3	10460071	10460550	+	0	NA	intron (NM_001353564, intron 2 of 20)	intron (NM_001353564, intron 2 of 20)	45274	NM_001363862	491		NM_001683	ENSG00000157087	ATP2B2	DFNA82|PMCA2|PMCA2a|PMCA2i	ATPase plasma membrane Ca2+ transporting 2	protein-coding
16918	chr1	155892401	155892830	+	0	NA	Intergenic	(CTAT)n|Simple_repeat|Simple_repeat	18303	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
230204	chr9	127815501	127816400	+	0	NA	promoter-TSS (NR_136302)	promoter-TSS (NR_136302)	-116	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
206791	chr7	36780621	36781440	+	0	NA	Intergenic	Intergenic	-56481	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
193309	chr6	30101671	30102410	+	0	NA	TTS (NM_007028).3	TTS (NM_007028).3	-3200	NR_126470	104533120		NR_126470	ENSG00000231226	TRIM31-AS1	-	TRIM31 antisense RNA 1	ncRNA
62131	chr13	95681301	95681500	+	0	NA	intron (NM_006260, intron 1 of 11)	AluJr|SINE|Alu	4261	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
100652	chr17	63698801	63699700	+	0	NA	intron (NM_030576, intron 2 of 4)	intron (NM_030576, intron 2 of 4)	875	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
153723	chr22	29297451	29297550	+	0	NA	intron (NM_001163286, intron 11 of 15)	AluJo|SINE|Alu	-9523	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
131442	chr2	96317471	96318480	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7342	NM_001008949	150771		NM_178495	ENSG00000198885	ITPRIPL1	D1B|KIAA1754L	ITPRIP like 1	protein-coding
52224	chr12	54388821	54389400	+	0	NA	intron (NM_001130968, intron 1 of 6)	intron (NM_001130968, intron 1 of 6)	2188	NM_001130968	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
173898	chr4	24658071	24658230	+	0	NA	Intergenic	Intergenic	-73596	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
93788	chr17	20320551	20321180	+	0	NA	promoter-TSS (NR_023380)	promoter-TSS (NR_023380)	-309	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
80159	chr16	2106301	2106800	+	0	NA	TTS (NR_106775)	TTS (NR_106775)	198	NR_106965	102465985		NR_106965	ENSG00000283346	MIR6511B2	MIR6511B-2|hsa-mir-6511b-2	microRNA 6511b-2	ncRNA
17399	chr1	156624171	156625300	+	0	NA	exon (NM_021817, exon 6 of 7)	exon (NM_021817, exon 6 of 7)	-2807	NR_135113	101928177		NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
62838	chr13	109781851	109782380	+	0	NA	exon (NM_003749, exon 1 of 2)	exon (NM_003749, exon 1 of 2)	4468	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
63358	chr13	114038221	114038680	+	0	NA	intron (NM_001320822, intron 4 of 23).2	intron (NM_001320822, intron 4 of 23).2	39505	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
206460	chr7	32904901	32906330	+	0	NA	Intergenic	MER66B|LTR|ERV1	-13855	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
222966	chr8	143192701	143193430	+	0	NA	Intergenic	L1MC5a|LINE|L1	-20153	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
110885	chr19	2640071	2640230	+	0	NA	intron (NM_052847, intron 2 of 4)	G-rich|Low_complexity|Low_complexity	9435	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
107865	chr18	54950301	54950500	+	0	NA	intron (NM_025214, intron 1 of 11)	intron (NM_025214, intron 1 of 11)	7648	NM_001143829	80323		NM_025214	ENSG00000166510	CCDC68	SE57-1	coiled-coil domain containing 68	protein-coding
99442	chr17	50127501	50128180	+	0	NA	intron (NM_174920, intron 1 of 10)	intron (NM_174920, intron 1 of 10)	2320	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
100902	chr17	64411251	64411650	+	0	NA	Intergenic	Intergenic	-20590	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
142638	chr20	5716251	5716550	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-33987	NM_001303478	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
42623	chr11	72226671	72227030	+	0	NA	intron (NM_001567, intron 1 of 27)	intron (NM_001567, intron 1 of 27)	2083	NM_001567	3636		NM_001567	ENSG00000165458	INPPL1	OPSMD|SHIP2	inositol polyphosphate phosphatase like 1	protein-coding
218263	chr8	42181471	42182030	+	0	NA	intron (NM_033011, intron 8 of 12)	intron (NM_033011, intron 8 of 12)	25815	NM_000930	5327		NM_000930	ENSG00000104368	PLAT	T-PA|TPA	plasminogen activator, tissue type	protein-coding
179843	chr5	488721	488980	+	0	NA	intron (NM_001284351, intron 2 of 16)	intron (NM_001284351, intron 2 of 16)	15614	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
100535	chr17	62503821	62504280	+	0	NA	intron (NM_001375269, intron 2 of 20)	intron (NM_001375269, intron 2 of 20)	22937	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
78483	chr15	92910571	92911180	+	0	NA	intron (NM_001042572, intron 2 of 12)	Tigger3a|DNA|TcMar-Tigger	6476	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
132663	chr2	108749521	108749980	+	0	NA	intron (NM_006267, intron 9 of 28)	AluJo|SINE|Alu	30268	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
163515	chr3	51403421	51403880	+	0	NA	intron (NR_146065, intron 22 of 25)	intron (NR_146065, intron 22 of 25)	12365	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
17197	chr1	156247701	156247900	+	0	NA	intron (NM_001272105, intron 1 of 8)	intron (NM_001272105, intron 1 of 8)	256	NM_001272104	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
144407	chr20	35280501	35280900	+	0	NA	non-coding (NR_052023, exon 4 of 7)	non-coding (NR_052023, exon 4 of 7)	-2578	NM_001355008	111089941		NM_001355008		MMP24-AS1-EDEM2	-	MMP24-AS1-EDEM2 readthrough	protein-coding
138781	chr2	216034051	216034930	+	0	NA	promoter-TSS (NM_001372190)	promoter-TSS (NM_001372190)	-394	NM_001372189	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
204280	chr7	2656451	2656780	+	0	NA	intron (NM_025250, intron 11 of 13)	intron (NM_025250, intron 11 of 13)	-22907	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
171878	chr4	775101	775830	+	0	NA	Intergenic	AluJr|SINE|Alu	6383	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
80357	chr16	2510921	2511180	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2676	NM_001198569	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
2668	chr1	10508451	10508550	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	33550	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
113048	chr19	8049471	8049630	+	0	NA	Intergenic	Intergenic	-3212	NM_001201359	6370		NM_005624	ENSG00000131142	CCL25	Ck beta-15|Ckb15|SCYA25|TECK|TECKvar	C-C motif chemokine ligand 25	protein-coding
31443	chr10	95835401	95835750	+	0	NA	intron (NM_001164183, intron 2 of 7)	L1PA17|LINE|L1	-72400	NM_001349008	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
131711	chr2	97768221	97768480	+	0	NA	intron (NM_015348, intron 33 of 40)	intron (NM_015348, intron 33 of 40)	35050	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
198447	chr6	106113301	106113800	+	0	NA	Intergenic	Intergenic	14609	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
225922	chr9	40502401	40502680	+	0	NA	intron (NR_160670, intron 2 of 3)	intron (NR_160670, intron 2 of 3)	2559	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
85883	chr16	57053301	57053500	+	0	NA	intron (NM_001384955, intron 24 of 47)	L2a|LINE|L2	-39183	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
211962	chr7	112556621	112556880	+	0	NA	Intergenic	Intergenic	-61315	NR_110160	100996249		NR_110159		LINC03076	-	long intergenic non-protein coding RNA 3076	ncRNA
204001	chr7	1854371	1855250	+	0	NA	intron (NM_001304524, intron 16 of 16)	MLT1A0-int|LTR|ERVL-MaLR	-10557	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
114500	chr19	12776701	12776980	+	0	NA	Intergenic	AluJb|SINE|Alu	-1288	NM_013312	29911		NM_013312	ENSG00000095066	HOOK2	HK2	hook microtubule tethering protein 2	protein-coding
132764	chr2	109798801	109799700	+	0	NA	intron (NM_001384364, intron 1 of 22).2	AluSc|SINE|Alu	4641	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
201681	chr6	149542571	149543280	+	0	NA	intron (NM_139126, intron 1 of 12)	intron (NM_139126, intron 1 of 12)	3118	NM_139126	85313		NM_139126	ENSG00000131013	PPIL4	HDCME13P	peptidylprolyl isomerase like 4	protein-coding
149535	chr21	33023771	33023930	+	0	NA	Intergenic	CpG	-2085	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
235772	chrX	49067301	49067700	+	0	NA	exon (NM_001163321, exon 10 of 11)	exon (NM_001163321, exon 10 of 11)	6502	NM_007213	11230		NM_007213	ENSG00000243279	PRAF2	JM4|Yip6a	PRA1 domain family member 2	protein-coding
3067	chr1	12176521	12176850	+	0	NA	intron (NM_001066, intron 1 of 9)	L2|LINE|L2	9694	NM_001066	7133		NM_001066	ENSG00000028137	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	TNF receptor superfamily member 1B	protein-coding
105568	chr18	92551	92850	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-16365	NR_033770	727758		NR_033770	ENSG00000290877	ROCK1P1	ROCK1P	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
153170	chr22	23807971	23808550	+	0	NA	intron (NR_003082, intron 4 of 4)	AluY|SINE|Alu	21294	NM_001007468	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
51248	chr12	51013021	51013480	+	0	NA	intron (NM_001174125, intron 1 of 15)	Tigger15a|DNA|TcMar-Tigger	-4035	NM_001379448	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
161440	chr3	42026271	42026430	+	0	NA	Intergenic	Intergenic	-60850	NM_001349245	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
29628	chr10	71797301	71797930	+	0	NA	intron (NM_001171933, intron 2 of 22)	intron (NM_001171933, intron 2 of 22)	1844	NM_001171934	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
204334	chr7	2738221	2738480	+	0	NA	intron (NM_001282441, intron 3 of 4)	intron (NM_001282441, intron 3 of 4)	24790	NM_001282440	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
155306	chr22	38184821	38185180	+	0	NA	Intergenic	Intergenic	-3170	NM_001349866	8398		NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
26069	chr10	12902151	12902330	+	0	NA	intron (NM_001282658, intron 6 of 6)	intron (NM_001282658, intron 6 of 6)	99473	NM_031455	83643		NM_031455	ENSG00000151468	CCDC3	-	coiled-coil domain containing 3	protein-coding
208611	chr7	72956271	72956450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1597	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
222612	chr8	141037821	141038080	+	0	NA	Intergenic	Intergenic	-35871	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
130834	chr2	87092621	87092880	+	0	NA	Intergenic	AluSc|SINE|Alu	-16337	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
97303	chr17	43228551	43229150	+	0	NA	promoter-TSS (NM_001363254)	promoter-TSS (NM_001363254)	161	NR_047479	100874261		NM_001363254	ENSG00000236383	CCDC200	LINC00854|TMEM106A-AS1	coiled-coil domain containing 200	protein-coding
125029	chr2	9592521	9592780	+	0	NA	intron (NM_006826, intron 2 of 5)	AluSx3|SINE|Alu	-36820	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
6246	chr1	27554651	27554950	+	0	NA	intron (NM_001029882, intron 3 of 6)	intron (NM_001029882, intron 3 of 6)	48694	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
11615	chr1	91709951	91710250	+	0	NA	intron (NR_036634, intron 14 of 17)	intron (NR_036634, intron 14 of 17)	176051	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
143171	chr20	24143101	24143300	+	0	NA	Intergenic	Intergenic	-56567	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
111069	chr19	3154851	3155700	+	0	NA	promoter-TSS (NR_110670)	promoter-TSS (NR_110670)	-100	NR_110670	100996351		NR_110670	ENSG00000267551	GNA15-DT	-	GNA15 divergent transcript	ncRNA
85721	chr16	56634201	56634550	+	0	NA	TTS (NM_176870)	TTS (NM_176870)	-1364	NR_036677	4498		NM_175622	ENSG00000290662	MT1JP	MT1|MT1J|MT1NP|MTB	metallothionein 1J, pseudogene	pseudo
81729	chr16	11308871	11309730	+	0	NA	Intergenic	AluJo|SINE|Alu	-2773	NR_031678	100313773		NR_031678	ENSG00000221801	MIR548H2	MIR548H-2|MIRN548H2	microRNA 548h-2	ncRNA
11774	chr1	92467751	92467850	+	0	NA	Intergenic	AluJb|SINE|Alu	16154	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
24225	chr1	236144201	236144500	+	0	NA	intron (NM_003272, intron 1 of 6)	AluJb|SINE|Alu	1811	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
77915	chr15	89243301	89244830	+	0	NA	promoter-TSS (NM_001376910)	promoter-TSS (NM_001376910)	86	NM_001376910	55215		NM_018193	ENSG00000140525	FANCI	KIAA1794	FA complementation group I	protein-coding
126558	chr2	28621101	28622480	+	0	NA	intron (NM_153021, intron 49 of 57)	intron (NM_153021, intron 49 of 57)	55433	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
104310	chr17	80900801	80901200	+	0	NA	intron (NM_020761, intron 20 of 33)	intron (NM_020761, intron 20 of 33)	70213	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
233904	chrX	1605671	1606030	+	0	NA	intron (NM_004043, intron 1 of 9)	AluSp|SINE|Alu	-9209	NM_001171038	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
62720	chr13	104922651	104922750	+	0	NA	Intergenic	L1PB1|LINE|L1	-543167	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
45512	chr11	118695051	118695150	+	0	NA	Intergenic	Intergenic	-15450	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
86484	chr16	66997971	66998500	+	0	NA	intron (NM_173815, intron 2 of 11)	L2|LINE|L2	-2304	NM_001190202	283848		NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
7840	chr1	36320221	36320480	+	0	NA	exon (NM_001162530, exon 14 of 16)	exon (NM_001162530, exon 14 of 16)	3295	NM_001304762	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
224856	chr9	29866071	29866500	+	0	NA	Intergenic	MER51A|LTR|ERV1	542169	NR_046204	401497		NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
83963	chr16	29156921	29157580	+	0	NA	Intergenic	Intergenic	82408	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
96255	chr17	39845451	39846230	+	0	NA	intron (NM_183231, intron 1 of 5)	intron (NM_183231, intron 1 of 5)	18348	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
189184	chr5	171415071	171415230	+	0	NA	Intergenic	AluSz|SINE|Alu	-4497	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
70294	chr14	101768821	101769080	+	0	NA	intron (NM_001352915, intron 2 of 14)	AluY|SINE|Alu	6580	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
105596	chr18	650371	650550	+	0	NA	TTS (NM_001289036)	TTS (NM_001289036)	-7193	NM_001354867	7298		NM_001071	ENSG00000176890	TYMS	DKCD|HST422|TMS|TS	thymidylate synthetase	protein-coding
26603	chr10	22258421	22258680	+	0	NA	TTS (NR_038921)	TTS (NR_038921)	6478	NR_038921	100130992		NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
233654	chrX	991351	991450	+	0	NA	Intergenic	Intergenic	221249	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
125247	chr2	10407651	10408700	+	0	NA	intron (NM_001258358, intron 2 of 4)	intron (NM_001258358, intron 2 of 4)	38674	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
17029	chr1	156066101	156066700	+	0	NA	intron (NM_020387, intron 2 of 4)	MIR|SINE|MIR	5240	NR_133653	57111		NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
94676	chr17	30383101	30383450	+	0	NA	intron (NM_001199775, intron 1 of 20)	MIRb|SINE|MIR	2797	NM_001199775	1362		NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
195140	chr6	35688401	35690130	+	0	NA	promoter-TSS (NM_001145777)	promoter-TSS (NM_001145777)	-323	NM_001145777	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
73709	chr15	45128321	45128580	+	0	NA	intron (NM_001276268, intron 1 of 5)	intron (NM_001276268, intron 1 of 5)	1429	NM_001276266	90527		NM_144565	ENSG00000140254	DUOXA1	NIP|NUMBIP|mol	dual oxidase maturation factor 1	protein-coding
87074	chr16	68396321	68396980	+	0	NA	intron (NM_018667, intron 1 of 8)	intron (NM_018667, intron 1 of 8)	51858	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
91641	chr17	5435821	5436400	+	0	NA	intron (NM_001212, intron 2 of 5)	intron (NM_001212, intron 2 of 5)	3045	NM_001212	708		NM_001212	ENSG00000108561	C1QBP	COXPD33|GC1QBP|HABP1|SF2AP32|SF2p32|gC1Q-R|gC1qR|p32	complement C1q binding protein	protein-coding
95649	chr17	38011851	38012280	+	0	NA	intron (NM_001369499, intron 10 of 12).2	intron (NM_001369499, intron 10 of 12).2	8032	NM_001291465	101060389		NM_001123390	ENSG00000274419	TBC1D3D	PRC17|TBC1D3|TBC1D3A|TBC1D3H	TBC1 domain family member 3D	protein-coding
8580	chr1	41379771	41379930	+	0	NA	intron (NM_001291281, intron 1 of 2)	MIRb|SINE|MIR	-4181	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
103202	chr17	77469251	77469830	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	-6095	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
13007	chr1	111186351	111186650	+	0	NA	3' UTR (NM_024901, exon 12 of 12)	3' UTR (NM_024901, exon 12 of 12)	14146	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
111363	chr19	3691271	3691630	+	0	NA	intron (NM_001300849, intron 1 of 16)	MER74B|LTR|ERVL	9018	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
77727	chr15	85709271	85709730	+	0	NA	intron (NM_001270546, intron 10 of 28)	MER102c|DNA|hAT-Charlie	49225	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
43824	chr11	86799971	86801280	+	0	NA	promoter-TSS (NM_007173)	promoter-TSS (NM_007173)	83	NM_001293179	11098		NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	serine protease 23	protein-coding
125323	chr2	10776401	10776830	+	0	NA	intron (NM_144583, intron 10 of 12)	intron (NM_144583, intron 10 of 12)	36170	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
168851	chr3	152276501	152277450	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-7349	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
10112	chr1	59057351	59057450	+	0	NA	intron (NR_110626, intron 2 of 2)	intron (NR_110626, intron 2 of 2)	36924	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
230810	chr9	129026551	129026930	+	0	NA	intron (NM_001369914, intron 1 of 10)	intron (NM_001369914, intron 1 of 10)	1591	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
45388	chr11	118318371	118318530	+	0	NA	Intergenic	AluSg|SINE|Alu	13720	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
225044	chr9	33162651	33162750	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-4248	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
19631	chr1	180168701	180169180	+	0	NA	intron (NM_001004128, intron 2 of 12)	intron (NM_001004128, intron 2 of 12)	14071	NM_002826	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
18498	chr1	161726051	161728130	+	0	NA	intron (NM_001288831, intron 5 of 5)	CpG-1909	4437	NM_001288830	127943		NM_152378	ENSG00000162746	FCRLB	FCRL2|FCRLM2|FCRLY|FREB-2|FREB2|FcRY	Fc receptor like B	protein-coding
238115	chrX	136646601	136647230	+	0	NA	Intergenic	Intergenic	-1243	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
102539	chr17	75827521	75828830	+	0	NA	intron (NM_199242, intron 31 of 31)	intron (NM_199242, intron 31 of 31)	16229	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
184888	chr5	112707121	112708500	+	0	NA	exon (NM_001127511, exon 1 of 14)	exon (NM_001127511, exon 1 of 14)	312	NM_001354902	324		NM_000038	ENSG00000134982	APC	BTPS2|DESMD|DP2|DP2.5|DP3|GS|PPP1R46	APC regulator of WNT signaling pathway	protein-coding
33846	chr10	124229401	124230350	+	0	NA	Intergenic	Intergenic	-136277	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
232537	chr9	136339021	136339550	+	0	NA	intron (NM_015597, intron 7 of 8)	L1MB5|LINE|L1	11746	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
172182	chr4	1237271	1237680	+	0	NA	intron (NM_001377193, intron 3 of 9)	intron (NM_001377193, intron 3 of 9)	11253	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
234233	chrX	13027001	13027700	+	0	NA	Intergenic	Intergenic	17270	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
9738	chr1	53236871	53237180	+	0	NA	intron (NM_002370, intron 1 of 4)	AluSx1|SINE|Alu	1493	NM_002370	4116		NM_002370	ENSG00000162385	MAGOH	MAGOH1|MAGOHA	mago homolog, exon junction complex subunit	protein-coding
231185	chr9	129911301	129911500	+	0	NA	intron (NM_001363755, intron 11 of 15)	MER21A|LTR|ERVL	41795	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
18105	chr1	160701721	160701980	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK11-int|LTR|ERVK	9972	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
24672	chr1	247120021	247120830	+	0	NA	Intergenic	Intergenic	-8008	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
168965	chr3	152388121	152388580	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-47360	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
213582	chr7	139368621	139369030	+	0	NA	intron (NM_016019, intron 1 of 9)	L1ME3C|LINE|L1	8931	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
186169	chr5	134191501	134192250	+	0	NA	Intergenic	Intergenic	-14842	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
6775	chr1	30753571	30754150	+	0	NA	intron (NM_006762, intron 1 of 7)	L1MC3|LINE|L1	3914	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
233753	chrX	1390251	1390650	+	0	NA	intron (NM_001636, intron 1 of 3)	AluY|SINE|Alu	1663	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
20663	chr1	200258451	200258750	+	0	NA	Intergenic	Intergenic	115192	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
168300	chr3	141529471	141530430	+	0	NA	intron (NM_006506, intron 4 of 23)	intron (NM_006506, intron 4 of 23)	42923	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
116170	chr19	17406871	17407950	+	0	NA	intron (NR_130765, intron 3 of 4)	LTR13|LTR|ERVK	1669	NM_001304547	93343		NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
61120	chr13	48498801	48499230	+	0	NA	intron (NR_147985, intron 10 of 11)	L2|LINE|L2	34065	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
216676	chr8	22153301	22154050	+	0	NA	intron (NM_139278, intron 5 of 7)	AluSx3|SINE|Alu	3131	NM_139278	203190		NM_139278	ENSG00000168481	LGI3	IDDMDS|LGIL4	leucine rich repeat LGI family member 3	protein-coding
105792	chr18	2903201	2903600	+	0	NA	intron (NM_032048, intron 4 of 7)	HAL1|LINE|L1	43223	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
174201	chr4	37452921	37453220	+	0	NA	promoter-TSS (NM_001104629)	promoter-TSS (NM_001104629)	-855	NM_001104629	55286		NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
45716	chr11	119090051	119090150	+	0	NA	intron (NM_000190, intron 7 of 13)	intron (NM_000190, intron 7 of 13)	2113	NM_001024382	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
99940	chr17	57257531	57258850	+	0	NA	intron (NM_170721, intron 2 of 9)	intron (NM_170721, intron 2 of 9)	1171	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
127363	chr2	39219651	39220150	+	0	NA	intron (NM_001009565, intron 2 of 7)	ERVL-E-int|LTR|ERVL	9688	NM_001346911	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
15315	chr1	149865301	149865800	+	0	NA	Intergenic	AluSx|SINE|Alu	-4391	NM_003548	8370		NM_003548	ENSG00000270882	H4C14	FO108|H4|H4-16|H4/n|H4C1|H4C11|H4C12|H4C13|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2|H4FN|HIST2H4|HIST2H4A	H4 clustered histone 14	protein-coding
47993	chr12	6912871	6913230	+	0	NA	intron (NM_001135217, intron 7 of 7)	intron (NM_001135217, intron 7 of 7)	-1530	NM_001975	2026		NM_001975	ENSG00000111674	ENO2	HEL-S-279|NSE	enolase 2	protein-coding
47822	chr12	6591621	6591880	+	0	NA	exon (NM_001363606, exon 21 of 40)	exon (NM_001363606, exon 21 of 40)	-10141	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
185302	chr5	126699701	126699900	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	68095	NM_207408	389320		NM_207408	ENSG00000196900	SPMIP10	C5orf48|TEX43|Tseg7	sperm microtubule inner protein 10	protein-coding
158623	chr3	4904901	4905500	+	0	NA	intron (NR_125916, intron 1 of 2)	intron (NR_125916, intron 1 of 2)	1301	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
83072	chr16	22359871	22360380	+	0	NA	intron (NM_001802, intron 2 of 4)	intron (NM_001802, intron 2 of 4)	14494	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
174080	chr4	27048301	27048830	+	0	NA	Intergenic	Intergenic	-168914	NR_125921	101929199		NR_125921	ENSG00000249699	LINC02261	-	long intergenic non-protein coding RNA 2261	ncRNA
11930	chr1	93708001	93708200	+	0	NA	intron (NM_001261408, intron 2 of 13)	intron (NM_001261408, intron 2 of 13)	-26263	NM_003567	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
225407	chr9	35053501	35053950	+	0	NA	Intergenic	AluSx|SINE|Alu	11485	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
194136	chr6	31975851	31976480	+	0	NA	intron (NM_004197, intron 2 of 6)	SVA_D|Retroposon|SVA	3802	NM_004197	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
123935	chr19	55374501	55375350	+	0	NA	Intergenic	MSR1|Satellite|Satellite	-1901	NM_139172	147744		NM_139172	ENSG00000160472	TMEM190	MDAC1	transmembrane protein 190	protein-coding
171600	chr3	197260601	197261000	+	0	NA	intron (NM_001204386, intron 4 of 24)	intron (NM_001204386, intron 4 of 24)	33148	NR_039960	100616216		NR_039960	ENSG00000265850	MIR4797	-	microRNA 4797	ncRNA
68988	chr14	91479151	91479930	+	0	NA	intron (NM_001284281, intron 2 of 12)	AluJr|SINE|Alu	30770	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
237312	chrX	118116371	118117130	+	0	NA	5' UTR (NM_001168302, exon 1 of 8)	5' UTR (NM_001168302, exon 1 of 8)	115	NM_001168303	90293		NM_033495	ENSG00000003096	KLHL13	BKLHD2	kelch like family member 13	protein-coding
60270	chr13	40610901	40611230	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	55576	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
166595	chr3	119149551	119149880	+	0	NA	intron (NM_152539, intron 2 of 2)	Tigger3b|DNA|TcMar-Tigger	3550	NM_152539	152405		NM_152539	ENSG00000163424	TEX55	C3orf30|TSCPA	testis expressed 55	protein-coding
203442	chr7	362301	363100	+	0	NA	Intergenic	L1M5|LINE|L1	-16725	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
64809	chr14	34981001	34981600	+	0	NA	intron (NR_151701, intron 1 of 4)	intron (NR_151701, intron 1 of 4)	1266	NR_151701	100506157		NR_151701		SRP54-AS1	-	SRP54 antisense RNA 1	ncRNA
82097	chr16	14487001	14487200	+	0	NA	intron (NM_002582, intron 21 of 23)	intron (NM_002582, intron 21 of 23)	-116834	NR_131191	105447648		NR_131191	ENSG00000260009	LINC02130	-	long intergenic non-protein coding RNA 2130	ncRNA
77630	chr15	85440321	85440980	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	60047	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
152455	chr22	20695321	20696180	+	0	NA	Intergenic	Intergenic	-5364	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
144922	chr20	36976401	36976600	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-24792	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
158724	chr3	8503771	8504330	+	0	NA	intron (NM_001278233, intron 1 of 4)	intron (NM_001278233, intron 1 of 4)	2227	NM_014583	29995		NM_014583	ENSG00000071282	LMCD1	-	LIM and cysteine rich domains 1	protein-coding
18733	chr1	167471551	167472050	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	46729	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
222809	chr8	142457471	142457630	+	0	NA	intron (NM_001702, intron 1 of 30)	intron (NM_001702, intron 1 of 30)	7901	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
234421	chrX	16804751	16805230	+	0	NA	intron (NM_001168683, intron 1 of 7)	AluJo|SINE|Alu	18524	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
213786	chr7	140810901	140811450	+	0	NA	intron (NM_001378475, intron 2 of 17)	Tigger17a|DNA|TcMar-Tigger	113093	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
171950	chr4	891671	892230	+	0	NA	intron (NM_001318134, intron 6 of 24)	intron (NM_001318134, intron 6 of 24)	40366	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
191307	chr6	6702601	6703000	+	0	NA	Intergenic	Intergenic	-79974	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
156048	chr22	39978201	39978500	+	0	NA	Intergenic	L1MC1|LINE|L1	-16604	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
62637	chr13	101289771	101289930	+	0	NA	intron (NM_052867, intron 9 of 43)	intron (NM_052867, intron 9 of 43)	126658	NM_001350748	259232		NM_052867	ENSG00000102452	NALCN	CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding
5793	chr1	26545251	26546950	+	0	NA	intron (NM_001006665, intron 1 of 20)	intron (NM_001006665, intron 1 of 20)	258	NM_001006665	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
215075	chr7	154146051	154146350	+	0	NA	intron (NM_130797, intron 1 of 25)	intron (NM_130797, intron 1 of 25)	-85630	NR_136254	101929998		NR_136254		LOC101929998	-	uncharacterized LOC101929998	ncRNA
214473	chr7	150370501	150371200	+	0	NA	5' UTR (NM_013400, exon 3 of 4)	5' UTR (NM_013400, exon 3 of 4)	2028	NM_001362745	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
68239	chr14	76963401	76963600	+	0	NA	intron (NR_133913, intron 2 of 2)	MER4B|LTR|ERV1	3862	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
19339	chr1	173823871	173825800	+	0	NA	promoter-TSS (NM_001171182)	promoter-TSS (NM_001171182)	162	NM_001365213	55157		NM_018122	ENSG00000117593	DARS2	ASPRS|LBSL|MT-ASPRS|mtAspRS	aspartyl-tRNA synthetase 2, mitochondrial	protein-coding
10951	chr1	84167921	84168180	+	0	NA	intron (NM_001375580, intron 1 of 8)	intron (NM_001375580, intron 1 of 8)	3356	NM_001375577	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
188524	chr5	155773621	155774180	+	0	NA	Intergenic	Intergenic	-553264	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
86819	chr16	67871601	67874780	+	0	NA	TTS (NM_001322040)	TTS (NM_001322040)	138	NM_014329	23644		NM_014329	ENSG00000038358	EDC4	GE1|Ge-1|HEDL5|HEDLS|RCD-8|RCD8	enhancer of mRNA decapping 4	protein-coding
119871	chr19	41449201	41449950	+	0	NA	Intergenic	Intergenic	6419	NM_001130514	100170765		NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
139823	chr2	230413071	230413430	+	0	NA	Intergenic	Intergenic	-2906	NM_001206703	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
144044	chr20	33647351	33648000	+	0	NA	3' UTR (NM_001039709, exon 11 of 11)	3' UTR (NM_001039709, exon 11 of 11)	-14652	NM_080825	128864		NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
181070	chr5	36692851	36693400	+	0	NA	Intergenic	Intergenic	86519	NM_004172	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
194614	chr6	33550901	33551500	+	0	NA	Intergenic	AluSg|SINE|Alu	29076	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
28181	chr10	44030251	44030430	+	0	NA	Intergenic	Intergenic	117938	NR_136148	283033		NR_033846		LINC00841	-	long intergenic non-protein coding RNA 841	ncRNA
173659	chr4	13647171	13647330	+	0	NA	Intergenic	Intergenic	-7929	NR_121681	101929071		NR_121681	ENSG00000250634	LINC01182	-	long intergenic non-protein coding RNA 1182	ncRNA
198331	chr6	102170151	102170250	+	0	NA	Intergenic	L1PA2|LINE|L1	771215	NM_001166247	2898		NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6|NEDLAS	glutamate ionotropic receptor kainate type subunit 2	protein-coding
150459	chr21	42511521	42511780	+	0	NA	intron (NM_018964, intron 2 of 20)	AluJo|SINE|Alu	-2202	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
73217	chr15	41586601	41586800	+	0	NA	Intergenic	MER41A|LTR|ERV1	26728	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
131832	chr2	98657821	98658180	+	0	NA	intron (NM_001160154, intron 3 of 12)	intron (NM_001160154, intron 3 of 12)	5473	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
63013	chr13	112689101	112691130	+	0	NA	promoter-TSS (NM_015205)	promoter-TSS (NM_015205)	-214	NM_032189	23250		NM_015205	ENSG00000068650	ATP11A	ATPIH|ATPIS|AUNA2|DFNA84|HLD24	ATPase phospholipid transporting 11A	protein-coding
37409	chr11	17267651	17267950	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-8914	NM_001352666	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
227962	chr9	94909701	94909900	+	0	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	35754	NR_147613	101928119		NR_147613		LOC101928119	-	uncharacterized LOC101928119	ncRNA
220805	chr8	102737971	102738130	+	0	NA	Intergenic	Intergenic	-68772	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
192260	chr6	20318801	20321130	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-81914	NM_001949	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
28888	chr10	62812521	62812930	+	0	NA	3' UTR (NM_001136179, exon 3 of 3)	3' UTR (NM_001136179, exon 3 of 3)	3641	NM_001321037	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
122167	chr19	48895121	48895530	+	0	NA	intron (NM_003323, intron 5 of 12)	MSR1|Satellite|Satellite	3419	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
24909	chr10	1054971	1055130	+	0	NA	intron (NM_001317955, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	-1335	NM_014023	22884		NM_014023	ENSG00000047056	WDR37	NOCGUS	WD repeat domain 37	protein-coding
33427	chr10	118735371	118735600	+	0	NA	intron (NM_153810, intron 1 of 8)	MER5A|DNA|hAT-Charlie	19485	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
173909	chr4	25232151	25232580	+	0	NA	Intergenic	LTR34|LTR|ERV1	-1668	NR_144633	55300		NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
96038	chr17	39447751	39447850	+	0	NA	exon (NM_004774, exon 2 of 17)	exon (NM_004774, exon 2 of 17)	3463	NM_004774	5469		NM_004774	ENSG00000125686	MED1	CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2	mediator complex subunit 1	protein-coding
198004	chr6	90093771	90094130	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	199481	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
14051	chr1	120769151	120769630	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-36166	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
194713	chr6	33761971	33762380	+	0	NA	Intergenic	Intergenic	-15190	NM_001142883	117283		NM_054111	ENSG00000161896	IP6K3	IHPK3|INSP6K3	inositol hexakisphosphate kinase 3	protein-coding
130050	chr2	74436121	74436380	+	0	NA	intron (NM_001015055, intron 1 of 11)	CpG	4333	NM_033046	6242		NM_033046	ENSG00000114993	RTKN	RTKN-1	rhotekin	protein-coding
107528	chr18	48410171	48410700	+	0	NA	intron (NM_001371287, intron 1 of 5)	CpG-12532	-1052	NM_001371286	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
137282	chr2	195516471	195517030	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-140208	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
235576	chrX	47512851	47513700	+	0	NA	Intergenic	CpG	-30006	NM_001324145	7592		NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
128606	chr2	61044371	61044730	+	0	NA	intron (NM_002618, intron 2 of 3)	AluJb|SINE|Alu	-21320	NM_001330432	84542		NM_032506	ENSG00000162929	SANBR	KIAA1841	SANT and BTB domain regulator of CSR	protein-coding
89606	chr16	89295801	89296800	+	0	NA	non-coding (NR_136339, exon 1 of 3)	non-coding (NR_136339, exon 1 of 3)	172	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
145856	chr20	45899571	45900130	+	0	NA	exon (NM_182676, exon 12 of 15)	exon (NM_182676, exon 12 of 15)	8515	NM_000308	5476		NM_000308	ENSG00000064601	CTSA	GLB2|GSL|NGBE|PPCA|PPGB	cathepsin A	protein-coding
50432	chr12	47632351	47632900	+	0	NA	Intergenic	Intergenic	73405	NM_024604	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
228100	chr9	96449421	96451880	+	0	NA	intron (NM_014282, intron 1 of 7)	CpG	481	NM_014282	22927		NM_014282	ENSG00000130956	HABP4	IHABP-4|IHABP4|Ki-1/57|SERBP1L	hyaluronan binding protein 4	protein-coding
220661	chr8	101132901	101133300	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	37139	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
137913	chr2	200891401	200892300	+	0	NA	promoter-TSS (NM_001142356)	promoter-TSS (NM_001142356)	-68	NM_001142356	60491		NM_021824	ENSG00000196290	NIF3L1	ALS2CR1|CALS-7|MDS015	NGG1 interacting factor 3 like 1	protein-coding
97061	chr17	42371201	42371400	+	0	NA	intron (NM_001369516, intron 1 of 23)	L2|LINE|L2	17142	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
82129	chr16	14723921	14724800	+	0	NA	exon (NM_001277323, exon 6 of 8)	exon (NM_001277323, exon 6 of 8)	12671	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
95341	chr17	35766671	35767280	+	0	NA	3' UTR (NM_032950, exon 8 of 9).2	3' UTR (NM_032950, exon 8 of 9).2	6088	NM_145272	146853		NM_145272	ENSG00000270806	C17orf50	-	chromosome 17 open reading frame 50	protein-coding
91349	chr17	4499701	4500580	+	0	NA	intron (NM_001124758, intron 1 of 12)	intron (NM_001124758, intron 1 of 12)	1259	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
12174	chr1	100359151	100359550	+	0	NA	intron (NM_001319210, intron 2 of 16)	MIR|SINE|MIR	6844	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
35242	chr11	844511	845430	+	0	NA	intron (NM_001025237, intron 1 of 8)	intron (NM_001025237, intron 1 of 8)	524	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
50254	chr12	46255421	46256080	+	0	NA	intron (NM_001278387, intron 1 of 17)	MER41-int|LTR|ERV1	10766	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
128956	chr2	64626271	64626430	+	0	NA	Intergenic	Intergenic	19038	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
124016	chr19	55474571	55474930	+	0	NA	Intergenic	AluJb|SINE|Alu	-1867	NM_033113	89887		NM_033113	ENSG00000197483	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
210964	chr7	101602321	101602780	+	0	NA	Intergenic	Intergenic	26746	NM_138403	93408		NM_138403	ENSG00000106436	MYL10	MYLC2PL|PLRLC	myosin light chain 10	protein-coding
41688	chr11	66629901	66630100	+	0	NA	TTS (NM_006328)	TTS (NM_006328)	-8617	NM_001198843	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
20009	chr1	185294101	185294850	+	0	NA	Intergenic	L1ME1|LINE|L1	22768	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
207984	chr7	55438601	55439000	+	0	NA	Intergenic	L2a|LINE|L2	73463	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
127069	chr2	37453021	37453380	+	0	NA	Intergenic	Intergenic	108570	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
120235	chr19	42351401	42351600	+	0	NA	TTS (NR_107044)	TTS (NR_107044)	369	NR_107044	102465875		NR_107044	ENSG00000277533	MIR8077	hsa-mir-8077	microRNA 8077	ncRNA
23312	chr1	228085301	228085800	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	2400	NM_001024227	375		NM_001658	ENSG00000143761	ARF1	PVNH8	ADP ribosylation factor 1	protein-coding
198496	chr6	106360401	106361450	+	0	NA	exon (NM_001371242, exon 1 of 22)	exon (NM_001371242, exon 1 of 22)	208	NM_001371242	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
112253	chr19	5784871	5785400	+	0	NA	promoter-TSS (NM_001134316)	promoter-TSS (NM_001134316)	-389	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
231202	chr9	129942301	129943280	+	0	NA	intron (NM_001363755, intron 6 of 15)	intron (NM_001363755, intron 6 of 15)	73185	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
40653	chr11	64736321	64737230	+	0	NA	exon (NM_001318398, exon 9 of 17)	exon (NM_001318398, exon 9 of 17)	7367	NM_001098671	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
135524	chr2	162123921	162124480	+	0	NA	intron (NR_110255, intron 1 of 3)	intron (NR_110255, intron 1 of 3)	9759	NR_110255	101929532		NR_110255	ENSG00000236841	LOC101929532	-	uncharacterized LOC101929532	ncRNA
102728	chr17	76202251	76202750	+	0	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	37993	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
82327	chr16	15756371	15756800	+	0	NA	intron (NM_022844, intron 13 of 41).2	intron (NM_022844, intron 13 of 41).2	100443	NM_001040113	4629		NM_002474	ENSG00000133392	MYH11	AAT4|FAA4|SMHC|SMMHC|SMMS-1|VSCM2	myosin heavy chain 11	protein-coding
91147	chr17	3757121	3757580	+	0	NA	intron (NM_002208, intron 9 of 30)	L2b|LINE|L2	33447	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
238653	chrX	154011471	154011830	+	0	NA	3' UTR (NM_001025243, exon 13 of 13)	3' UTR (NM_001025243, exon 13 of 13)	8252	NM_001025242	3654		NM_001569	ENSG00000184216	IRAK1	IRAK|pelle	interleukin 1 receptor associated kinase 1	protein-coding
224580	chr9	20144371	20144530	+	0	NA	Intergenic	Intergenic	266788	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
10248	chr1	63691901	63692130	+	0	NA	Intergenic	Intergenic	68799	NM_001172818	5236		NM_002633	ENSG00000079739	PGM1	CDG1T|GSD14	phosphoglucomutase 1	protein-coding
101654	chr17	68265601	68265800	+	0	NA	intron (NM_014960, intron 1 of 11)	MER58B|DNA|hAT-Charlie	6518	NM_001352904	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
161830	chr3	45658001	45658580	+	0	NA	intron (NM_014240, intron 2 of 7)	intron (NM_014240, intron 2 of 7)	30592	NR_033947	644714		NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
69927	chr14	99526571	99527550	+	0	NA	intron (NM_001144995, intron 2 of 5)	(GCAGG)n|Simple_repeat|Simple_repeat	45651	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
70467	chr14	102067021	102067280	+	0	NA	Intergenic	L2b|LINE|L2	19894	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
37670	chr11	26741321	26741400	+	0	NA	Intergenic	Intergenic	-19300	NM_178498	159963		NM_178498	ENSG00000148942	SLC5A12	SMCT2	solute carrier family 5 member 12	protein-coding
50615	chr12	48683701	48683900	+	0	NA	Intergenic	Intergenic	-1562	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
130444	chr2	85421771	85421950	+	0	NA	intron (NM_201594, intron 1 of 20)	L2b|LINE|L2	2929	NM_201594								
48216	chr12	8154401	8155000	+	0	NA	Intergenic	Intergenic	-17854	NM_001004328	440077		NM_001004328	ENSG00000196946	ZNF705A	-	zinc finger protein 705A	protein-coding
167001	chr3	125968001	125968300	+	0	NA	intron (NM_001385066, intron 1 of 6)	AluJb|SINE|Alu	-1028	NM_001012337	152015		NM_001012337	ENSG00000114547	ROPN1B	-	rhophilin associated tail protein 1B	protein-coding
114557	chr19	12892571	12892730	+	0	NA	intron (NR_102316, intron 5 of 11)	AluSq|SINE|Alu	1490	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
127110	chr2	37643121	37643600	+	0	NA	3' UTR (NM_001270438, exon 2 of 2)	3' UTR (NM_001270438, exon 2 of 2)	28282	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
172205	chr4	1291571	1291730	+	0	NA	intron (NR_123716, intron 1 of 6)	intron (NR_123716, intron 1 of 6)	1759	NM_001297431	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
197217	chr6	63664151	63664250	+	0	NA	intron (NM_001370348, intron 2 of 15)	intron (NM_001370348, intron 2 of 15)	17674	NM_015153	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
238903	chrX	154644501	154644900	+	0	NA	Intergenic	Intergenic	8879	NM_172377	30848		NM_020994	ENSG00000126890	CTAG2	CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B	cancer/testis antigen 2	protein-coding
50774	chr12	49032871	49034000	+	0	NA	exon (NM_003482, exon 40 of 55)	exon (NM_003482, exon 40 of 55)	-14659	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
224669	chr9	21092451	21092900	+	0	NA	Intergenic	L1MCa|LINE|L1	-14733	NM_002176	3456		NM_002176	ENSG00000171855	IFNB1	IFB|IFF|IFN-beta|IFNB	interferon beta 1	protein-coding
167334	chr3	128746471	128746630	+	0	NA	intron (NM_004637, intron 1 of 5)	AluY|SINE|Alu	20367	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
101904	chr17	74431971	74433050	+	0	NA	5' UTR (NM_001366261, exon 1 of 5)	5' UTR (NM_001366261, exon 1 of 5)	422	NM_022036	55890		NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding
227616	chr9	92761871	92762030	+	0	NA	intron (NM_001003800, intron 1 of 6)	intron (NM_001003800, intron 1 of 6)	2883	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
23588	chr1	229661271	229661730	+	0	NA	Intergenic	Intergenic	35253	NM_014777	9816		NM_014777	ENSG00000135763	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis homolog	protein-coding
32686	chr10	103966321	103967980	+	0	NA	promoter-TSS (NM_001304743)	promoter-TSS (NM_001304743)	10	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
235988	chrX	54042551	54043160	+	0	NA	intron (NM_001184896, intron 1 of 21)	intron (NM_001184896, intron 1 of 21)	292	NM_001184898	23133		NM_015107	ENSG00000172943	PHF8	JHDM1F|KDM7B|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
59650	chr13	28355751	28356130	+	0	NA	intron (NM_002019, intron 15 of 29)	intron (NM_002019, intron 15 of 29)	139188	NM_002019	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
232425	chr9	136093621	136094900	+	0	NA	intron (NM_144653, intron 1 of 5)	CpG	1029	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
101753	chr17	72556971	72557580	+	0	NA	intron (NR_036488, intron 1 of 3)	intron (NR_036488, intron 1 of 3)	35529	NR_036488	100499467		NR_036488	ENSG00000227036	LINC00673	ERRLR01|HI-LNC75|HILNC75|LUCAIR1|RASON|SLNCR|SLNCR1	long intergenic non-protein coding RNA 673	ncRNA
78444	chr15	92819801	92820980	+	0	NA	Intergenic	Intergenic	24906	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
93316	chr17	18178121	18178580	+	0	NA	intron (NM_016239, intron 64 of 64)	AluSc|SINE|Alu	-5478	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
238754	chrX	154340671	154342700	+	0	NA	Intergenic	CpG	32949	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
61731	chr13	74128201	74128700	+	0	NA	intron (NM_007249, intron 1 of 7)	MIRc|SINE|MIR	5479	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
179433	chr4	184347451	184347750	+	0	NA	intron (NR_040108, intron 2 of 2)	intron (NR_040108, intron 2 of 2)	6377	NR_040108	728175		NR_040108	ENSG00000180712	LINC02363	-	long intergenic non-protein coding RNA 2363	ncRNA
65739	chr14	53150921	53151200	+	0	NA	intron (NM_030637, intron 1 of 11)	intron (NM_030637, intron 1 of 11)	2263	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
154451	chr22	35396171	35396730	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-3690	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
187455	chr5	142120121	142120800	+	0	NA	intron (NM_030571, intron 1 of 7)	HAL1|LINE|L1	11681	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
111228	chr19	3509871	3510250	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	3749	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
46985	chr12	27951	28150	+	0	NA	intron (NR_130745, intron 1 of 10)	intron (NR_130745, intron 1 of 10)	3965	NR_130745	100288778		NR_130745	ENSG00000226210	WASH8P	-	WAS protein family homolog 8, pseudogene	pseudo
22547	chr1	222474001	222474200	+	0	NA	Intergenic	Intergenic	74004	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
139241	chr2	219358051	219358800	+	0	NA	Intergenic	CpG	-25248	NM_001007089	389075		NM_001007089	ENSG00000182698	RESP18	-	regulated endocrine specific protein 18	protein-coding
119377	chr19	40193151	40193250	+	0	NA	intron (NM_002446, intron 1 of 9)	MER20|DNA|hAT-Charlie	1774	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
125268	chr2	10443121	10443630	+	0	NA	intron (NM_001287190, intron 7 of 11)	intron (NM_001287190, intron 7 of 11)	3474	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
103185	chr17	77450101	77450600	+	0	NA	promoter-TSS (NM_001113496)	promoter-TSS (NM_001113496)	-399	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
15233	chr1	149562971	149563150	+	0	NA	Intergenic	L2|LINE|L2	-20763	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
216649	chr8	22123971	22124130	+	0	NA	intron (NM_018411, intron 5 of 17)	intron (NM_018411, intron 5 of 17)	6960	NM_005144	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
105825	chr18	2972001	2973280	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	-26017	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
183090	chr5	74394771	74394930	+	0	NA	intron (NR_126354, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	72364	NR_105010	101929082		NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA
31484	chr10	96586301	96588180	+	0	NA	promoter-TSS (NM_020123)	promoter-TSS (NM_020123)	-228	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
7995	chr1	37975021	37975400	+	0	NA	intron (NM_006802, intron 12 of 16)	intron (NM_006802, intron 12 of 16)	14812	NM_001320830	10946		NM_006802	ENSG00000183431	SF3A3	PRP9|PRPF9|SAP61|SF3a60	splicing factor 3a subunit 3	protein-coding
144450	chr20	35518801	35519000	+	0	NA	3' UTR (NM_007186, exon 35 of 35)	3' UTR (NM_007186, exon 35 of 35)	10752	NR_026933	140873		NM_080828	ENSG00000125975	C20orf173	dJ477O4.4	chromosome 20 open reading frame 173	protein-coding
85844	chr16	57013271	57013700	+	0	NA	intron (NR_169520, intron 1 of 47)	intron (NR_169520, intron 1 of 47)	23928	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
14826	chr1	146306401	146307100	+	0	NA	Intergenic	Intergenic	8759	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
19137	chr1	171542401	171542930	+	0	NA	intron (NM_015172, intron 16 of 33)	intron (NM_015172, intron 16 of 33)	57135	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
198837	chr6	109237001	109237330	+	0	NA	intron (NR_152435, intron 14 of 45)	intron (NR_152435, intron 14 of 45)	71334	NR_152435	221262		NM_173671	ENSG00000203799	CCDC162P	C6orf183|C6orf184|C6orf185|CCDC162	coiled-coil domain containing 162, pseudogene	pseudo
167280	chr3	128625321	128625580	+	0	NA	intron (NM_002950, intron 8 of 9)	intron (NM_002950, intron 8 of 9)	25368	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
58602	chr12	132478401	132478650	+	0	NA	Intergenic	Intergenic	-11626	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171422	chr3	196228201	196228400	+	0	NA	intron (NM_152672, intron 5 of 8)	intron (NM_152672, intron 5 of 8)	11766	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
65568	chr14	51959001	51959200	+	0	NA	intron (NM_053064, intron 3 of 3)	L2a|LINE|L2	-30446	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
160052	chr3	18457751	18458050	+	0	NA	intron (NR_125803, intron 1 of 6)	(TTTTCTG)n|Simple_repeat|Simple_repeat	-12308	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
136771	chr2	181444671	181444830	+	0	NA	Intergenic	Intergenic	-12142	NM_001316312	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
230429	chr9	128150471	128151130	+	0	NA	intron (NM_005564, intron 2 of 6)	intron (NM_005564, intron 2 of 6)	1347	NM_005564	3934		NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL|p25	lipocalin 2	protein-coding
100427	chr17	60673451	60673950	+	0	NA	Intergenic	AluJo|SINE|Alu	-4151	NM_001320470	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
177186	chr4	108168201	108169730	+	0	NA	promoter-TSS (NM_001130714)	promoter-TSS (NM_001130714)	-9	NM_001130714	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
203711	chr7	1056271	1056630	+	0	NA	intron (NM_001303474, intron 2 of 2)	intron (NM_001303474, intron 2 of 2)	1080	NM_001303474	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
197030	chr6	53339171	53339730	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	-1833	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
94132	chr17	28274901	28275100	+	0	NA	TTS (NR_028334)	TTS (NR_028334)	27556	NR_002181	23614		NM_021092	ENSG00000290672	PPY2P	PPY2	pancreatic polypeptide 2, pseudogene	pseudo
106258	chr18	12371551	12372050	+	0	NA	intron (NM_006796, intron 1 of 16)	intron (NM_006796, intron 1 of 16)	5427	NM_006796	10939		NM_006796	ENSG00000141385	AFG3L2	OPA12|SCA28|SPAX5	AFG3 like matrix AAA peptidase subunit 2	protein-coding
60750	chr13	44593671	44594330	+	0	NA	Intergenic	LTR12|LTR|ERV1	-17435	NM_001243799	8848		NM_006022	ENSG00000102804	TSC22D1	HUCEP-2|Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
38308	chr11	43852021	43852300	+	0	NA	intron (NM_016142, intron 9 of 10)	intron (NM_016142, intron 9 of 10)	-28671	NM_139178	221120		NM_139178	ENSG00000166199	ALKBH3	ABH3|DEPC-1|DEPC1|PCA1|hABH3	alkB homolog 3, alpha-ketoglutarate dependent dioxygenase	protein-coding
90380	chr17	1266621	1267030	+	0	NA	Intergenic	Intergenic	-3619	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
125296	chr2	10544121	10544950	+	0	NA	Intergenic	Intergenic	94807	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
116723	chr19	18455271	18455430	+	0	NA	intron (NM_006532, intron 6 of 11)	AluSg7|SINE|Alu	-17217	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
26575	chr10	21889901	21890380	+	0	NA	intron (NM_022365, intron 7 of 11)	AluSx|SINE|Alu	113590	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
119520	chr19	40549101	40549750	+	0	NA	intron (NM_025213, intron 4 of 9)	CpG	18934	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
209021	chr7	74400921	74401580	+	0	NA	intron (NM_032421, intron 14 of 15)	intron (NM_032421, intron 14 of 15)	-52656	NM_001199207	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
36729	chr11	9231001	9231880	+	0	NA	intron (NM_001243254, intron 1 of 22)	AluSp|SINE|Alu	33886	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
105547	chr17	83201471	83201630	+	0	NA	Intergenic	(CACATG)n|Simple_repeat|Simple_repeat	-25347	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
17691	chr1	158113251	158113750	+	0	NA	Intergenic	CpG	27140	NR_033946	646268		NR_033946	ENSG00000231666	LINC01704	-	long intergenic non-protein coding RNA 1704	ncRNA
235549	chrX	47244721	47245500	+	0	NA	intron (NM_001371072, intron 16 of 20)	intron (NM_001371072, intron 16 of 20)	12101	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
176818	chr4	102552001	102552280	+	0	NA	intron (NM_001382625, intron 6 of 24)	CR1-3_Croc|LINE|CR1	-49654	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
84185	chr16	29826301	29826500	+	0	NA	intron (NM_005115, intron 1 of 14)	AluJr|SINE|Alu	-4115	NM_001293205	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
75999	chr15	70762771	70763800	+	0	NA	intron (NM_018003, intron 1 of 18)	CpG	273	NM_018003	55075		NM_018003	ENSG00000137831	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
71991	chr15	25821251	25821550	+	0	NA	intron (NM_024490, intron 1 of 20)	AluJo|SINE|Alu	27425	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
213264	chr7	134637971	134638150	+	0	NA	Intergenic	Intergenic	-8719	NM_001293085	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
43741	chr11	86066571	86066880	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	2359	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
210132	chr7	98212071	98213130	+	0	NA	exon (NM_177455, exon 2 of 2)	exon (NM_177455, exon 2 of 2)	1161	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
123502	chr19	54206471	54207030	+	0	NA	intron (NR_135763, intron 5 of 5).9	intron (NR_135763, intron 5 of 5).9	5892	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
138302	chr2	203730051	203731030	+	0	NA	intron (NM_001243078, intron 2 of 2)	intron (NM_001243078, intron 2 of 2)	23901	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
191801	chr6	14278221	14278480	+	0	NA	Intergenic	Intergenic	7104	NR_108097	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
40334	chr11	63919451	63919550	+	0	NA	Intergenic	Intergenic	-2336	NM_173587	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
29827	chr10	72323801	72324600	+	0	NA	Intergenic	Intergenic	30719	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
24136	chr1	235835321	235835580	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	17610	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
86443	chr16	66920871	66921280	+	0	NA	TTS (NM_001128850)	TTS (NM_001128850)	-2190	NM_001204746	1014		NM_004062	ENSG00000166589	CDH16	-	cadherin 16	protein-coding
55085	chr12	96911401	96911600	+	0	NA	intron (NM_152905, intron 3 of 15)	intron (NM_152905, intron 3 of 15)	4034	NM_001135175	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
149427	chr21	31342521	31342780	+	0	NA	intron (NM_001353690, intron 1 of 27)	intron (NM_001353690, intron 1 of 27)	1704	NM_001353694	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
116624	chr19	18294101	18295750	+	0	NA	Intergenic	Intergenic	12848	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
122239	chr19	49009751	49010100	+	0	NA	promoter-TSS (NR_106856)	promoter-TSS (NR_106856)	19	NR_106856	102466738		NR_106856	ENSG00000273898	MIR6798	hsa-mir-6798	microRNA 6798	ncRNA
191665	chr6	13434671	13435120	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	-26758	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
198468	chr6	106180051	106180430	+	0	NA	Intergenic	L2a|LINE|L2	81299	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
37521	chr11	18617651	18618750	+	0	NA	intron (NM_194285, intron 1 of 5)	intron (NM_194285, intron 1 of 5)	16142	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
87246	chr16	69760871	69761030	+	0	NA	Intergenic	AluSq|SINE|Alu	-1382	NM_001270455	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
113067	chr19	8208551	8210630	+	0	NA	intron (NM_024552, intron 1 of 11)	CpG	220	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
16852	chr1	155708721	155708980	+	0	NA	intron (NM_033657, intron 1 of 12)	AluYj4|SINE|Alu	19756	NM_033657	7818		NM_004632	ENSG00000132676	DAP3	DAP-3|MRP-S29|MRPS29|S29mt|bMRP-10|mS29	death associated protein 3	protein-coding
38742	chr11	46929901	46930400	+	0	NA	Intergenic	Intergenic	-6539	NM_001003676	79096		NM_024113	ENSG00000149179	CSTPP1	C11orf49	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	protein-coding
126921	chr2	32862401	32863000	+	0	NA	intron (NR_027098, intron 2 of 5)	intron (NR_027098, intron 2 of 5)	37267	NR_027098	285045		NR_027098	ENSG00000230876	LINC00486	-	long intergenic non-protein coding RNA 486	ncRNA
218328	chr8	42797201	42798000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-28814	NM_001199279	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
30585	chr10	80143271	80145450	+	0	NA	intron (NR_138551, intron 3 of 3)	intron (NR_138551, intron 3 of 3)	11630	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
69715	chr14	98202601	98202800	+	0	NA	Intergenic	L2b|LINE|L2	-224576	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
227134	chr9	86275221	86275530	+	0	NA	intron (NM_030940, intron 1 of 3)	intron (NM_030940, intron 1 of 3)	7163	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
43978	chr11	94126971	94127130	+	0	NA	Intergenic	L2b|LINE|L2	-1791	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
52516	chr12	56077571	56077980	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2333	NM_001005915	2065		NM_001982	ENSG00000065361	ERBB3	ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|VSCN1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3	erb-b2 receptor tyrosine kinase 3	protein-coding
92969	chr17	17112471	17112830	+	0	NA	intron (NM_015134, intron 3 of 22)	intron (NM_015134, intron 3 of 22)	70193	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
170209	chr3	184145251	184145880	+	0	NA	TTS (NM_003907)	TTS (NM_003907)	-9812	NM_004423	1857		NM_004423	ENSG00000161202	DVL3	DRS3	dishevelled segment polarity protein 3	protein-coding
133681	chr2	127081501	127083030	+	0	NA	promoter-TSS (NM_001320634)	promoter-TSS (NM_001320634)	-200	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
69674	chr14	98135801	98136830	+	0	NA	Intergenic	Intergenic	-158191	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
51112	chr12	50072901	50073300	+	0	NA	promoter-TSS (NM_001256830)	promoter-TSS (NM_001256830)	-485	NM_001256830	41		NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding
71782	chr15	21655701	21655900	+	0	NA	Intergenic	L1P4b|LINE|L1	17221	NM_001365389	105369274		NM_001365389	ENSG00000279408	OR4N4C	-	olfactory receptor family 4 subfamily N member 4C	protein-coding
147629	chr20	62148171	62148530	+	0	NA	intron (NM_198935, intron 1 of 10)	intron (NM_198935, intron 1 of 10)	4581	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
232359	chr9	135714521	135714880	+	0	NA	exon (NM_020822, exon 2 of 31)	exon (NM_020822, exon 2 of 31)	12515	NM_020822	57582		NM_020822	ENSG00000107147	KCNT1	DEE14|EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
26472	chr10	17648021	17649280	+	0	NA	intron (NM_001324286, intron 1 of 10)	L2a|LINE|L2	4499	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
102357	chr17	75512201	75512400	+	0	NA	intron (NM_020753, intron 2 of 19)	intron (NM_020753, intron 2 of 19)	-2410	NM_001142643	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
62517	chr13	99504601	99504800	+	0	NA	intron (NM_004800, intron 1 of 16)	intron (NM_004800, intron 1 of 16)	3228	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
103269	chr17	77696821	77697080	+	0	NA	Intergenic	Intergenic	31609	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
233267	chr9	137293271	137293430	+	0	NA	Intergenic	Intergenic	8921	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
63708	chr14	21193301	21193500	+	0	NA	Intergenic	MER52A|LTR|ERV1	12103	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
112748	chr19	7387321	7388200	+	0	NA	intron (NM_001367823, intron 10 of 28)	AluSx1|SINE|Alu	-7385	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
170584	chr3	186871271	186871630	+	0	NA	Intergenic	Intergenic	-10082	NR_046662	100874095		NR_046662	ENSG00000226482	ADIPOQ-AS1	-	ADIPOQ antisense RNA 1	ncRNA
187329	chr5	141644871	141645230	+	0	NA	exon (NM_033449, exon 14 of 20)	exon (NM_033449, exon 14 of 20)	6368	NM_033449	89848		NM_033449	ENSG00000197948	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
180741	chr5	31908471	31908630	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	27609	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
75075	chr15	64373471	64373730	+	0	NA	intron (NM_001029989, intron 2 of 2)	intron (NM_001029989, intron 2 of 2)	7841	NM_001029989	9768		NM_014736	ENSG00000166803	PCLAF	KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF	PCNA clamp associated factor	protein-coding
159356	chr3	13281201	13281530	+	0	NA	intron (NM_001376938, intron 1 of 15)	intron (NM_001376938, intron 1 of 15)	1892	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
140273	chr2	232321351	232322330	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-56911	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
32879	chr10	110138151	110138600	+	0	NA	Intergenic	Intergenic	13605	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
27082	chr10	27256051	27256350	+	0	NA	Intergenic	AluSz|SINE|Alu	-2562	NR_138082	101060171		NR_138082		ODAD2P1	ARMC4P1	outer dynein arm docking complex subunit 2 pseudogene 1	pseudo
188275	chr5	151100321	151100580	+	0	NA	TTS (NM_001155)	TTS (NM_001155)	-12765	NM_001252390	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
28166	chr10	43647201	43647400	+	0	NA	intron (NR_047558, intron 2 of 2)	AluJr4|SINE|Alu	1358	NR_047558	414208		NR_047558	ENSG00000230565	ZNF32-AS2	ZNF32OS2|b402L1.7	ZNF32 antisense RNA 2	ncRNA
194864	chr6	34529451	34529950	+	0	NA	exon (NM_020804, exon 6 of 10)	exon (NM_020804, exon 6 of 10)	14828	NM_001199583	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
51772	chr12	53327921	53328630	+	0	NA	exon (NM_001173467, exon 3 of 3)	exon (NM_001173467, exon 3 of 3)	-6665	NM_001173466	8086		NM_015665	ENSG00000094914	AAAS	AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003	aladin WD repeat nucleoporin	protein-coding
44347	chr11	102426621	102427080	+	0	NA	intron (NM_052932, intron 2 of 4)	intron (NM_052932, intron 2 of 4)	25915	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
77510	chr15	84661201	84661480	+	0	NA	Intergenic	Intergenic	-3141	NM_021077	4828		NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
221734	chr8	127647671	127648030	+	0	NA	Intergenic	L1MD2|LINE|L1	86117	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
69175	chr14	92632971	92633130	+	0	NA	intron (NM_024832, intron 4 of 9)	intron (NM_024832, intron 4 of 9)	56816	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
97273	chr17	43023551	43023850	+	0	NA	Intergenic	Intergenic	-1315	NM_006373	10493		NM_006373	ENSG00000108828	VAT1	VATI	vesicle amine transport 1	protein-coding
96476	chr17	40250121	40250380	+	0	NA	intron (NM_133264, intron 1 of 7)	AluY|SINE|Alu	30946	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
101248	chr17	66299451	66299750	+	0	NA	Intergenic	Intergenic	-3013	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
24403	chr1	243179721	243180030	+	0	NA	intron (NM_001042405, intron 9 of 18).2	intron (NM_001042405, intron 9 of 18).2	75406	NM_014812	9859		NM_014812	ENSG00000143702	CEP170	FAM68A|KAB|KIAA0470	centrosomal protein 170	protein-coding
99458	chr17	50144621	50145280	+	0	NA	intron (NM_032595, intron 2 of 9)	intron (NM_032595, intron 2 of 9)	5727	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
229622	chr9	124016551	124017050	+	0	NA	intron (NM_004789, intron 3 of 4)	CpG	5032	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
213950	chr7	142713321	142713580	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-36022	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
171786	chr4	335071	335430	+	0	NA	Intergenic	Intergenic	-2564	NM_001348280	7700		NM_003441	ENSG00000131127	ZNF141	D4S90|pHZ-44	zinc finger protein 141	protein-coding
186102	chr5	134122121	134123230	+	0	NA	promoter-TSS (NM_001366502)	promoter-TSS (NM_001366502)	-943	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
109273	chr19	540621	541030	+	0	NA	intron (NM_004359, intron 4 of 4)	CpG	-3228	NM_005317	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
37903	chr11	34068371	34068930	+	0	NA	intron (NM_203364, intron 2 of 17)	intron (NM_203364, intron 2 of 17)	16919	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
63342	chr13	114024521	114025300	+	0	NA	intron (NM_001320822, intron 7 of 23).2	intron (NM_001320822, intron 7 of 23).2	-50834	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
221633	chr8	125908951	125909450	+	0	NA	Intergenic	Intergenic	41997	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
98162	chr17	46052601	46053580	+	0	NA	intron (NM_015443, intron 6 of 14).2	AluSq|SINE|Alu	53840	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
25697	chr10	8912271	8912630	+	0	NA	intron (NR_131944, intron 2 of 3)	intron (NR_131944, intron 2 of 3)	14461	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
123987	chr19	55442251	55442880	+	0	NA	exon (NM_001145176, exon 1 of 4)	exon (NM_001145176, exon 1 of 4)	298	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
133064	chr2	112406721	112406980	+	0	NA	intron (NM_005054, intron 7 of 22).3	AluSz|SINE|Alu	26764	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
84684	chr16	30773051	30773500	+	0	NA	intron (NM_014771, intron 19 of 19)	intron (NM_014771, intron 19 of 19)	10953	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
220811	chr8	102784251	102784350	+	0	NA	Intergenic	AluSx|SINE|Alu	-22522	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
154576	chr22	36266721	36267700	+	0	NA	3' UTR (NM_003661, exon 6 of 6)	3' UTR (NM_003661, exon 6 of 6)	14077	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
97086	chr17	42408801	42409000	+	0	NA	intron (NM_012232, intron 1 of 1)	AluSz|SINE|Alu	14356	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
30482	chr10	79247401	79247850	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-99844	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
92070	chr17	7518201	7518430	+	0	NA	Intergenic	AluSc8|SINE|Alu	-30743	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
213600	chr7	139392971	139393330	+	0	NA	intron (NM_016019, intron 2 of 9)	AluSx|SINE|Alu	33256	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
199168	chr6	111747051	111748200	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	11506	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
115370	chr19	15234451	15235280	+	0	NA	TTS (NM_001379291)	TTS (NM_001379291)	-1818	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
178716	chr4	152778021	152778280	+	0	NA	intron (NM_145720, intron 1 of 1)	intron (NM_145720, intron 1 of 1)	1580	NM_145720	201798		NM_145720	ENSG00000169989	TIGD4	-	tigger transposable element derived 4	protein-coding
136627	chr2	179044751	179045050	+	0	NA	intron (NM_173648, intron 2 of 23)	intron (NM_173648, intron 2 of 23)	5237	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
148127	chr20	63461421	63462080	+	0	NA	intron (NM_001382235, intron 1 of 16)	intron (NM_001382235, intron 1 of 16)	10905	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
206629	chr7	35916921	35917400	+	0	NA	Intergenic	Intergenic	115941	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
220536	chr8	100693721	100693980	+	0	NA	Intergenic	Intergenic	9174	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
113106	chr19	8291071	8291800	+	0	NA	Intergenic	Intergenic	16923	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
115845	chr19	16525101	16525300	+	0	NA	intron (NM_006387, intron 10 of 16)	CpG	17237	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
106743	chr18	23541801	23542250	+	0	NA	intron (NM_000271, intron 14 of 24)	Charlie8|DNA|hAT-Charlie	38514	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
200178	chr6	130744771	130744930	+	0	NA	Intergenic	Intergenic	-82556	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
211909	chr7	112383551	112384030	+	0	NA	Intergenic	Intergenic	-39354	NM_001197080	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
109540	chr19	867571	868850	+	0	NA	exon (NM_005481, exon 16 of 16)	exon (NM_005481, exon 16 of 16)	8546	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
184776	chr5	110738461	110739680	+	0	NA	promoter-TSS (NM_138773)	promoter-TSS (NM_138773)	63	NM_138773	91137		NM_138773	ENSG00000164209	SLC25A46	HMSN6B|PCH1E	solute carrier family 25 member 46	protein-coding
219041	chr8	65744851	65745200	+	0	NA	intron (NM_001242318, intron 5 of 12)	THE1A|LTR|ERVL-MaLR	44032	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
231028	chr9	129602971	129603730	+	0	NA	Intergenic	MIR|SINE|MIR	-5534	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
107153	chr18	35265001	35265200	+	0	NA	intron (NM_001112734, intron 1 of 3)	AluY|SINE|Alu	24066	NM_001135178	84307		NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
134554	chr2	144097751	144098050	+	0	NA	intron (NR_164809, intron 5 of 11)	intron (NR_164809, intron 5 of 11)	139439	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
148292	chr20	63707201	63709480	+	0	NA	promoter-TSS (NM_001134758)	promoter-TSS (NM_001134758)	301	NM_181485	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
110447	chr19	1986821	1987280	+	0	NA	intron (NM_017797, intron 7 of 8)	intron (NM_017797, intron 7 of 8)	28664	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
183483	chr5	79263201	79264330	+	0	NA	intron (NM_152405, intron 1 of 10)	AluJo|SINE|Alu	27634	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
122494	chr19	49568941	49569500	+	0	NA	intron (NM_001270960, intron 1 of 8)	AluY|SINE|Alu	11336	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
41332	chr11	65916601	65916800	+	0	NA	TTS (NM_031450)	TTS (NM_031450)	2362	NM_031450	83638		NM_031450	ENSG00000175573	C11orf68	BLES03|P5326	chromosome 11 open reading frame 68	protein-coding
141993	chr20	1423671	1424050	+	0	NA	Intergenic	Intergenic	-30688	NM_054014	2280		NM_000801	ENSG00000088832	FKBP1A	FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE	FKBP prolyl isomerase 1A	protein-coding
211659	chr7	106268421	106268680	+	0	NA	exon (NM_005746, exon 6 of 11)	exon (NM_005746, exon 6 of 11)	16433	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
104961	chr17	81964201	81964400	+	0	NA	Intergenic	Intergenic	-3113	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
73157	chr15	41429021	41429900	+	0	NA	intron (NM_015138, intron 1 of 17)	intron (NM_015138, intron 1 of 17)	12356	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
31767	chr10	98041421	98041730	+	0	NA	Intergenic	Intergenic	-10747	NM_001206528	55118		NM_018058	ENSG00000095713	CRTAC1	ASPIC|ASPIC1|CEP-68|CEP68|LOTUS	cartilage acidic protein 1	protein-coding
115527	chr19	15446751	15447050	+	0	NA	intron (NM_001371589, intron 2 of 12)	intron (NM_001371589, intron 2 of 12)	-2648	NR_031716	100302127		NR_031716	ENSG00000269782	MIR1470	MIRN1470|hsa-mir-1470	microRNA 1470	ncRNA
1393	chr1	2542471	2542630	+	0	NA	Intergenic	Intergenic	-12287	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
29745	chr10	72171521	72171780	+	0	NA	intron (NM_001369102, intron 6 of 11)	AluSx1|SINE|Alu	44306	NM_001369106	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
186474	chr5	138031401	138031650	+	0	NA	intron (NM_016603, intron 1 of 22)	AluSx1|SINE|Alu	-1249	NR_037900	100130172		NR_037900		FAM13B-AS1	-	FAM13B antisense RNA 1	ncRNA
48028	chr12	6948851	6949750	+	0	NA	intron (NM_080548, intron 1 of 15)	intron (NM_080548, intron 1 of 15)	-1971	NM_080549	5777		NM_002831	ENSG00000111679	PTPN6	HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1	protein tyrosine phosphatase non-receptor type 6	protein-coding
121567	chr19	47266851	47266950	+	0	NA	intron (NM_015603, intron 8 of 11)	intron (NM_015603, intron 8 of 11)	-7523	NR_037675	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
199196	chr6	111781061	111781850	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-21538	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
140540	chr2	233253171	233253750	+	0	NA	intron (NM_198890, intron 1 of 13).2	AluSx|SINE|Alu	1787	NM_017974	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
230355	chr9	128041571	128041730	+	0	NA	Intergenic	MER21A|LTR|ERVL	25670	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
2448	chr1	9632671	9633030	+	0	NA	Intergenic	Intergenic	-18881	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
128780	chr2	62222471	62223130	+	0	NA	exon (NM_001319075, exon 2 of 2)	exon (NM_001319075, exon 2 of 2)	7279	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
187023	chr5	139765441	139766250	+	0	NA	Intergenic	CpG	-19622	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
85914	chr16	57083541	57083650	+	0	NA	TTS (NR_169515)	TTS (NR_169515)	-8988	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
66360	chr14	61466071	61466230	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	104044	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
47499	chr12	4005251	4005350	+	0	NA	Intergenic	AluJb|SINE|Alu	-131852	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
155421	chr22	38413721	38413980	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-14924	NR_002821	400927		NM_001034843		TPTEP2	Z98749.2	TPTE pseudogene 2	pseudo
111002	chr19	3043601	3043800	+	0	NA	intron (NM_001144761, intron 2 of 19)	AluSx1|SINE|Alu	3935	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
59926	chr13	31136771	31136930	+	0	NA	3' UTR (NM_001286505, exon 16 of 16)	3' UTR (NM_001286505, exon 16 of 16)	25054	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
232053	chr9	133463151	133463680	+	0	NA	intron (NM_017586, intron 1 of 4)	intron (NM_017586, intron 1 of 4)	3437	NM_017586	11094		NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
114682	chr19	13102371	13103300	+	0	NA	promoter-TSS (NM_005583)	promoter-TSS (NM_005583)	23	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
174215	chr4	37684901	37685800	+	0	NA	intron (NM_001085400, intron 1 of 6)	intron (NM_001085400, intron 1 of 6)	1026	NM_001085399	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
3798	chr1	16717151	16717680	+	0	NA	intron (NR_026567, intron 1 of 10)	AluSp|SINE|Alu	2742	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
106644	chr18	22813671	22813830	+	0	NA	Intergenic	Intergenic	-26913	NR_110782	101927571		NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
50114	chr12	44930951	44931430	+	0	NA	Intergenic	Intergenic	-17262	NM_001145110	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
6312	chr1	27635621	27636030	+	0	NA	promoter-TSS (NM_005248)	promoter-TSS (NM_005248)	-640	NM_005248	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
1864	chr1	6414171	6414950	+	0	NA	TTS (NM_019089)	TTS (NM_019089)	5359	NM_019089	54626		NM_019089	ENSG00000069812	HES2	bHLHb40	hes family bHLH transcription factor 2	protein-coding
121710	chr19	47599151	47599250	+	0	NA	Intergenic	Intergenic	-8996	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
139374	chr2	221563321	221563780	+	0	NA	intron (NM_004438, intron 3 of 17)	intron (NM_004438, intron 3 of 17)	8754	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
70784	chr14	103519851	103519950	+	0	NA	exon (NM_001362531, exon 7 of 7)	exon (NM_001362531, exon 7 of 7)	2930	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
145420	chr20	43454621	43455200	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-2986	NR_034009	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
225595	chr9	36144001	36145650	+	0	NA	intron (NR_104637, intron 2 of 6)	intron (NR_104637, intron 2 of 6)	8040	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
178133	chr4	142261301	142261500	+	0	NA	intron (NM_001385459, intron 3 of 18)	intron (NM_001385459, intron 3 of 18)	44432	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
66395	chr14	61497601	61497800	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	72494	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
197503	chr6	75619151	75619500	+	0	NA	intron (NM_015571, intron 1 of 23)	L1MC3|LINE|L1	17445	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
83593	chr16	28172401	28172800	+	0	NA	intron (NM_001270940, intron 5 of 24)	intron (NM_001270940, intron 5 of 24)	39365	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
218757	chr8	58954671	58955030	+	0	NA	intron (NM_014729, intron 2 of 8)	intron (NM_014729, intron 2 of 8)	164297	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
166407	chr3	113626871	113627050	+	0	NA	intron (NR_136280, intron 25 of 25)	intron (NR_136280, intron 25 of 25)	32084	NR_039648	100616476		NR_039648	ENSG00000265253	MIR4446	mir-4446	microRNA 4446	ncRNA
78055	chr15	90095251	90095830	+	0	NA	intron (NM_002168, intron 1 of 10)	intron (NM_002168, intron 1 of 10)	5081	NM_001289910	3418		NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDH-2|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2	protein-coding
104855	chr17	81846701	81847230	+	0	NA	exon (NM_000918, exon 6 of 11)	exon (NM_000918, exon 6 of 11)	-11915	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
208348	chr7	66503551	66504450	+	0	NA	Intergenic	Intergenic	10309	NR_134571	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
150541	chr21	43044671	43044830	+	0	NA	Intergenic	Intergenic	23654	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
149969	chr21	36504271	36504500	+	0	NA	intron (NM_001146077, intron 2 of 2)	intron (NM_001146077, intron 2 of 2)	-24263	NM_001146079	23562		NM_012130	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
92463	chr17	8629421	8630050	+	0	NA	intron (NM_005964, intron 1 of 40)	CpG	990	NM_001375266	4628		NM_005964	ENSG00000133026	MYH10	NMMHC-IIB|NMMHCB	myosin heavy chain 10	protein-coding
6730	chr1	30517951	30518050	+	0	NA	Intergenic	Intergenic	-200772	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
154549	chr22	36194951	36195600	+	0	NA	intron (NM_145660, intron 4 of 4)	intron (NM_145660, intron 4 of 4)	9558	NM_030643	80832		NM_030643	ENSG00000100336	APOL4	APOL-IV|APOLIV	apolipoprotein L4	protein-coding
217082	chr8	23726701	23727300	+	0	NA	Intergenic	CpG	-20244	NM_001136271	137814		NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
200062	chr6	130027901	130028630	+	0	NA	intron (NM_001007102, intron 2 of 21)	intron (NM_001007102, intron 2 of 21)	8621	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
210250	chr7	99389751	99390350	+	0	NA	intron (NM_005720, intron 5 of 9)	intron (NM_005720, intron 5 of 9)	15320	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
133408	chr2	118846771	118847180	+	0	NA	exon (NM_001426, exon 1 of 2)	exon (NM_001426, exon 1 of 2)	673	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
176668	chr4	100147321	100147580	+	0	NA	Intergenic	Intergenic	-42583	NR_125924	101929353		NR_125924	ENSG00000249710	DDIT4L-AS1	-	DDIT4L antisense RNA 1	ncRNA
122006	chr19	48591001	48591400	+	0	NA	intron (NM_177973, intron 3 of 6)	L2b|LINE|L2	15464	NM_004605	6820		NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
12675	chr1	109423071	109423230	+	0	NA	intron (NM_001199774, intron 1 of 8)	intron (NM_001199774, intron 1 of 8)	3298	NM_001199772	5686		NM_002790	ENSG00000143106	PSMA5	PSC5|ZETA	proteasome 20S subunit alpha 5	protein-coding
190180	chr5	178193101	178193580	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-5969	NM_001358008	64396		NM_001358008	ENSG00000244234	GMCL2	GCL|GMCL1L|GMCL1P1	germ cell-less 2, spermatogenesis associated	protein-coding
87578	chr16	72787501	72788330	+	0	NA	exon (NM_001164766, exon 9 of 9)	exon (NM_001164766, exon 9 of 9)	-122945	NR_159372	101927957		NR_126330	ENSG00000261008	LINC01572	-	long intergenic non-protein coding RNA 1572	ncRNA
152329	chr22	20403121	20403980	+	0	NA	intron (NR_046282, intron 5 of 5)	L2c|LINE|L2	9399	NR_046282	7625		NM_003426	ENSG00000185252	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
48156	chr12	7930751	7931500	+	0	NA	intron (NM_006931, intron 4 of 9)	intron (NM_006931, intron 4 of 9)	5062	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
120287	chr19	43446801	43447600	+	0	NA	Intergenic	Intergenic	18408	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
170036	chr3	181712621	181713130	+	0	NA	exon (NM_003106, exon 1 of 1)	exon (NM_003106, exon 1 of 1)	950	NM_003106	6657		NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box transcription factor 2	protein-coding
192703	chr6	26310771	26311300	+	0	NA	Intergenic	Intergenic	-25501	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
12714	chr1	109505021	109505600	+	0	NA	3' UTR (NM_020703, exon 2 of 2)	3' UTR (NM_020703, exon 2 of 2)	4417	NM_020703	57463		NM_020703	ENSG00000181754	AMIGO1	ALI2|AMIGO|AMIGO-1	adhesion molecule with Ig like domain 1	protein-coding
86949	chr16	68116001	68117130	+	0	NA	intron (NM_173165, intron 1 of 9)	intron (NM_173165, intron 1 of 9)	31195	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
239326	chrY	18421271	18421750	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	-16464	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
227898	chr9	94002601	94002800	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-28113	NM_177995	138639		NM_152422	ENSG00000158079	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
117989	chr19	33521001	33522830	+	0	NA	promoter-TSS (NM_001166056)	promoter-TSS (NM_001166056)	-124	NM_000285	5184		NM_000285	ENSG00000124299	PEPD	PROLIDASE	peptidase D	protein-coding
213422	chr7	138003151	138003500	+	0	NA	Intergenic	Intergenic	-1239	NM_001253775	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
50535	chr12	47901871	47902200	+	0	NA	intron (NM_001017535, intron 1 of 10)	intron (NM_001017535, intron 1 of 10)	2959	NM_001374661	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
144826	chr20	36838251	36838550	+	0	NA	intron (NM_080627, intron 2 of 14)	AluJo|SINE|Alu	21473	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
220084	chr8	94119721	94120570	+	0	NA	Intergenic	MER52A|LTR|ERV1	88410	NM_004063	1015		NM_004063	ENSG00000079112	CDH17	CDH16|HPT-1|HPT1	cadherin 17	protein-coding
230967	chr9	129457751	129458790	+	0	NA	Intergenic	AluJb|SINE|Alu	-30390	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
75493	chr15	66356121	66357780	+	0	NA	promoter-TSS (NM_017858)	promoter-TSS (NM_017858)	-234	NM_001289986	54962		NM_017858	ENSG00000075131	TIPIN	-	TIMELESS interacting protein	protein-coding
22799	chr1	224497921	224499030	+	0	NA	intron (NM_001322302, intron 2 of 6)	intron (NM_001322302, intron 2 of 6)	63626	NR_136293	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
100969	chr17	64516071	64516630	+	0	NA	intron (NM_001316990, intron 4 of 18)	intron (NM_001316990, intron 4 of 18)	9373	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
203705	chr7	1043801	1045400	+	0	NA	promoter-TSS (NM_001303473)	promoter-TSS (NM_001303473)	54	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
143973	chr20	32846971	32847130	+	0	NA	intron (NM_012325, intron 6 of 6)	intron (NM_012325, intron 6 of 6)	-11873	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
192954	chr6	27826721	27826980	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	2758	NM_021968	8363		NM_021968	ENSG00000197238	H4C11	H4-16|H4/e|H4C1|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2iv|H4FE|HIST1H4J|TEBIVANED2|TEVANED2|dJ160A22.2	H4 clustered histone 11	protein-coding
198885	chr6	109477551	109478200	+	0	NA	intron (NM_014797, intron 2 of 6)	HAL1|LINE|L1	5344	NM_014797	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
72839	chr15	40137151	40137250	+	0	NA	Intergenic	Intergenic	-23869	NM_001211	701		NM_001211	ENSG00000156970	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
73359	chr15	42275071	42275880	+	0	NA	intron (NM_198141, intron 1 of 23)	intron (NM_198141, intron 1 of 23)	1307	NM_001301410	2595		NM_198141	ENSG00000214013	GANC	-	glucosidase alpha, neutral C	protein-coding
160117	chr3	19953601	19954000	+	0	NA	intron (NM_001292048, intron 2 of 5)	intron (NM_001292048, intron 2 of 5)	6703	NM_004162	5868		NM_004162	ENSG00000144566	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
712	chr1	1429071	1429480	+	0	NA	TTS (NR_125994)	TTS (NR_125994)	3147	NM_001146685	643965		NM_001146685	ENSG00000205116	TMEM88B	-	transmembrane protein 88B	protein-coding
229400	chr9	121192471	121192630	+	0	NA	intron (NM_016322, intron 2 of 7)	intron (NM_016322, intron 2 of 7)	-8933	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
53691	chr12	68487871	68488030	+	0	NA	Intergenic	MIRc|SINE|MIR	-36466	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
193362	chr6	30322571	30323330	+	0	NA	intron (NR_024052, intron 1 of 4)	AluSq2|SINE|Alu	3184	NR_052012	414778		NR_052012	ENSG00000270604	HCG17	HCG18|LINC00046|NCRNA00046	HLA complex group 17	ncRNA
35035	chr11	571571	572200	+	0	NA	Intergenic	Intergenic	-3428	NR_038262	100506211		NR_038262	ENSG00000247095	MIR210HG	-	MIR210 host gene	ncRNA
74607	chr15	60587251	60587500	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	5151	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
192604	chr6	26023671	26023830	+	0	NA	Intergenic	Intergenic	2101	NM_003538	8359		NM_003538	ENSG00000278637	H4C1	H4-16|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4FA|HIST1H4A	H4 clustered histone 1	protein-coding
88922	chr16	87822871	87823030	+	0	NA	Intergenic	Intergenic	11710	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
233139	chr9	137158051	137158450	+	0	NA	intron (NM_007327, intron 6 of 19)	intron (NM_007327, intron 6 of 19)	11020	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
191815	chr6	14661071	14661630	+	0	NA	Intergenic	L2c|LINE|L2	-375896	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
146984	chr20	53070521	53070780	+	0	NA	intron (NM_173485, intron 1 of 2)	(GT)n|Simple_repeat|Simple_repeat	98292	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
103137	chr17	77397901	77398300	+	0	NA	intron (NM_001113494, intron 1 of 10)	AluJo|SINE|Alu	-1046	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
88893	chr16	87760771	87761130	+	0	NA	intron (NM_001351937, intron 2 of 11)	AluSx1|SINE|Alu	5036	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
5956	chr1	26897921	26898580	+	0	NA	intron (NM_022078, intron 1 of 6)	intron (NM_022078, intron 1 of 6)	2217	NM_022078	63906		NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
102965	chr17	76708651	76709700	+	0	NA	intron (NM_001008528, intron 1 of 3)	intron (NM_001008528, intron 1 of 3)	422	NR_130926	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
67383	chr14	69778321	69778650	+	0	NA	exon (NM_003049, exon 4 of 5)	exon (NM_003049, exon 4 of 5)	-10772	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
131936	chr2	99140841	99142150	+	0	NA	promoter-TSS (NR_146001)	promoter-TSS (NR_146001)	-66	NM_001349012	80705		NM_025244	ENSG00000135951	TSGA10	CEP4L|CT79|SPGF26	testis specific 10	protein-coding
15488	chr1	150385701	150386180	+	0	NA	intron (NM_015203, intron 1 of 10)	intron (NM_015203, intron 1 of 10)	21829	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
154988	chr22	37303771	37304900	+	0	NA	intron (NM_001318024, intron 8 of 12)	intron (NM_001318024, intron 8 of 12)	21827	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
224819	chr9	26940371	26940530	+	0	NA	intron (NM_001321546, intron 1 of 12)	L1MB3|LINE|L1	-6540	NM_001099223	80173		NM_025103	ENSG00000096872	IFT74	BBS22|CCDC2|CMG-1|CMG1|JBTS40|SPGF58	intraflagellar transport 74	protein-coding
14763	chr1	146028151	146028650	+	0	NA	Intergenic	AluSx|SINE|Alu	-6665	NM_145277	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
227866	chr9	93623051	93623350	+	0	NA	intron (NM_005392, intron 1 of 21)	(TGTGGA)n|Simple_repeat|Simple_repeat	28359	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
171264	chr3	195867051	195867630	+	0	NA	intron (NM_001382273, intron 13 of 15)	intron (NM_001382273, intron 13 of 15)	-6936	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
32661	chr10	103847901	103848250	+	0	NA	intron (NM_014631, intron 1 of 13)	intron (NM_014631, intron 1 of 13)	7331	NM_014631	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
163628	chr3	52054601	52055300	+	0	NA	intron (NM_001947, intron 1 of 2)	intron (NM_001947, intron 1 of 2)	1621	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
64269	chr14	23307401	23307800	+	0	NA	intron (NM_001199864, intron 2 of 8)	intron (NM_001199864, intron 2 of 8)	740	NM_001199839	599		NM_004050	ENSG00000129473	BCL2L2	BCL-W|BCL2-L-2|BCLW|PPP1R51	BCL2 like 2	protein-coding
52636	chr12	56277071	56277780	+	0	NA	intron (NM_004077, intron 6 of 10)	AluY|SINE|Alu	10099	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
93298	chr17	18152421	18152680	+	0	NA	intron (NM_016239, intron 41 of 64)	MIR|SINE|MIR	-31278	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
97753	chr17	44438651	44439430	+	0	NA	intron (NM_001304942, intron 2 of 6)	intron (NM_001304942, intron 2 of 6)	-2189	NM_001304943	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
99810	chr17	51461521	51461780	+	0	NA	Intergenic	LTR50|LTR|ERVL	26223	NR_146897	105371828		NR_146897	ENSG00000267452	LINC02073	-	long intergenic non-protein coding RNA 2073	ncRNA
168539	chr3	146160851	146161350	+	0	NA	promoter-TSS (NM_182943)	promoter-TSS (NM_182943)	84	NM_182943	5352		NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
176940	chr4	102889951	102890050	+	0	NA	3' UTR (NM_001008388, exon 3 of 3)	3' UTR (NM_001008388, exon 3 of 3)	21008	NM_001008388	493856		NM_001008388	ENSG00000145354	CISD2	ERIS|Miner1|NAF-1|WFS2|ZCD2	CDGSH iron sulfur domain 2	protein-coding
151058	chr21	44707821	44708700	+	0	NA	intron (NM_001272037, intron 1 of 12)	intron (NM_001272037, intron 1 of 12)	3312	NM_144991	54084		NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|ECTD14|STHAG10|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding
135275	chr2	159873001	159873430	+	0	NA	intron (NM_001198760, intron 12 of 37)	intron (NM_001198760, intron 12 of 37)	31541	NM_002349	4065		NM_002349	ENSG00000054219	LY75	CD205|CLEC13B|DEC-205|GP200-MR6|LY-75	lymphocyte antigen 75	protein-coding
94414	chr17	29073801	29074000	+	0	NA	exon (NM_004740, exon 1 of 1)	exon (NM_004740, exon 1 of 1)	1709	NM_004740	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
60471	chr13	41131271	41131630	+	0	NA	exon (NM_152903, exon 1 of 1)	exon (NM_152903, exon 1 of 1)	1352	NM_152903	89890		NM_152903	ENSG00000165572	KBTBD6	-	kelch repeat and BTB domain containing 6	protein-coding
174493	chr4	39948001	39948300	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluJr4|SINE|Alu	29761	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
220317	chr8	98827951	98828750	+	0	NA	intron (NM_001256312, intron 3 of 12)	AluJb|SINE|Alu	-2662	NM_006281	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
66025	chr14	58273451	58273880	+	0	NA	intron (NR_029434, intron 4 of 4)	AluSx4|SINE|Alu	-14368	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
175095	chr4	54145001	54145200	+	0	NA	Intergenic	Intergenic	44937	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
12222	chr1	100406921	100407500	+	0	NA	intron (NM_001319210, intron 4 of 16)	L1PA11|LINE|L1	54704	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
180412	chr5	10364351	10365180	+	0	NA	intron (NM_001270661, intron 1 of 22)	intron (NM_001270661, intron 1 of 22)	11070	NM_001270661	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
51434	chr12	52030551	52031000	+	0	NA	intron (NM_001202233, intron 1 of 7)	MIR|SINE|MIR	-6940	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
49087	chr12	14451951	14452700	+	0	NA	intron (NM_181352, intron 6 of 14)	L1M4|LINE|L1	67044	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
45176	chr11	117234121	117234750	+	0	NA	intron (NM_207343, intron 2 of 14)	intron (NM_207343, intron 2 of 14)	1699	NM_001077239	257160		NM_207343	ENSG00000167257	RNF214	-	ring finger protein 214	protein-coding
39019	chr11	47747901	47748100	+	0	NA	intron (NM_015308, intron 6 of 16)	AluSx1|SINE|Alu	19341	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
44149	chr11	96183551	96183650	+	0	NA	intron (NM_032427, intron 1 of 4)	AluJo|SINE|Alu	-157838	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
117548	chr19	21022801	21023430	+	0	NA	intron (NM_025189, intron 2 of 4)	intron (NM_025189, intron 2 of 4)	2458	NM_025189	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
102851	chr17	76485851	76486350	+	0	NA	intron (NR_164787, intron 2 of 18)	(AC)n|Simple_repeat|Simple_repeat	15323	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
176696	chr4	101017021	101017480	+	0	NA	Intergenic	AluY|SINE|Alu	223622	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
128852	chr2	63855901	63857130	+	0	NA	intron (NM_001377524, intron 3 of 10)	intron (NM_001377524, intron 3 of 10)	14619	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
145602	chr20	44616171	44616600	+	0	NA	intron (NM_007066, intron 3 of 3)	L2c|LINE|L2	33806	NM_001281445	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
150325	chr21	42058121	42058380	+	0	NA	Intergenic	L2b|LINE|L2	-4627	NM_001199527	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
199072	chr6	111647971	111648330	+	0	NA	Intergenic	Intergenic	-41876	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
80707	chr16	3071701	3073500	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	6816	NM_001012636	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
16647	chr1	155137751	155137850	+	0	NA	intron (NM_001287588, intron 3 of 4)	intron (NM_001287588, intron 3 of 4)	1948	NM_001287587	55974		NM_018845	ENSG00000169241	SLC50A1	HsSWEET1|RAG1AP1|SCP|SWEET1|slv	solute carrier family 50 member 1	protein-coding
26734	chr10	22685551	22685880	+	0	NA	intron (NM_005028, intron 1 of 9)	AluJr|SINE|Alu	28393	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
167015	chr3	126134121	126134400	+	0	NA	intron (NM_001270365, intron 10 of 20)	intron (NM_001270365, intron 10 of 20)	30620	NR_046602	100874204		NR_046602	ENSG00000250012	ALDH1L1-AS1	SLC41A3-AS1	ALDH1L1 antisense RNA 1	ncRNA
172211	chr4	1296651	1296750	+	0	NA	intron (NR_123716, intron 1 of 6)	L2a|LINE|L2	6809	NM_001297431	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
48398	chr12	9647251	9648870	+	0	NA	promoter-TSS (NR_002814)	promoter-TSS (NR_002814)	13	NR_002814	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
235451	chrX	46485921	46486180	+	0	NA	Intergenic	L1PA6|LINE|L1	38753	NM_001129898	55634		NM_017776	ENSG00000147121	KRBOX4	ZNF673	KRAB box domain containing 4	protein-coding
51252	chr12	51021451	51022180	+	0	NA	intron (NM_001174125, intron 1 of 15)	intron (NM_001174125, intron 1 of 15)	4326	NM_001174129	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
76894	chr15	77989451	77989550	+	0	NA	Intergenic	MIRb|SINE|MIR	4725	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
10576	chr1	67335821	67336430	+	0	NA	intron (NM_001374259, intron 8 of 16)	intron (NM_001374259, intron 8 of 16)	28252	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
23043	chr1	226549801	226550900	+	0	NA	intron (NM_001003665, intron 1 of 3)	intron (NM_001003665, intron 1 of 3)	1586	NM_001003665	375057		NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
90855	chr17	2365571	2365950	+	0	NA	intron (NM_001346700, intron 11 of 22)	AluSg|SINE|Alu	28259	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
152023	chr22	19434251	19435430	+	0	NA	exon (NM_001318152, exon 2 of 3)	exon (NM_001318152, exon 2 of 3)	1901	NM_001318152	64976		NM_003776	ENSG00000185608	MRPL40	L40mt|MRP-L22|MRP-L40|MRPL22|NLVCF|URIM|mL40	mitochondrial ribosomal protein L40	protein-coding
184749	chr5	109832371	109833000	+	0	NA	intron (NM_002372, intron 16 of 21)	SVA_B|Retroposon|SVA	-50497	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
145952	chr20	46111451	46111550	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-6814	NM_152854	958		NM_001250	ENSG00000101017	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule	protein-coding
208367	chr7	66630721	66630980	+	0	NA	intron (NM_153033, intron 1 of 3)	MIR1_Amn|SINE|MIR	1969	NM_153033	154881		NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
138369	chr2	203950671	203952150	+	0	NA	intron (NM_012092, intron 1 of 4)	MIR3|SINE|MIR	14647	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123569	chr19	54448151	54449880	+	0	NA	promoter-TSS (NR_126418)	promoter-TSS (NR_126418)	23	NR_126418	104355426		NR_126418	ENSG00000226696	LENG8-AS1	-	LENG8 antisense RNA 1	ncRNA
181414	chr5	40736321	40737180	+	0	NA	intron (NM_012382, intron 2 of 4)	MIR|SINE|MIR	19211	NM_012382	23548		NM_012382	ENSG00000113638	TTC33	OSRF	tetratricopeptide repeat domain 33	protein-coding
225826	chr9	37903351	37904950	+	0	NA	promoter-TSS (NM_033412)	promoter-TSS (NM_033412)	-23	NM_033412	92014		NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
46580	chr11	128508011	128508380	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	14115	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
211866	chr7	111018401	111018600	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-72506	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
65998	chr14	58236921	58237180	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-7755	NR_038123	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
73651	chr15	44707371	44708230	+	0	NA	Intergenic	L1MA3|LINE|L1	-3717	NM_004048	567		NM_004048	ENSG00000166710	B2M	IMD43	beta-2-microglobulin	protein-coding
45415	chr11	118357471	118357830	+	0	NA	Intergenic	L1MB4|LINE|L1	-1950	NM_001204077	9354		NM_004788	ENSG00000110344	UBE4A	E4|NEDHMS|UBOX2|UFD2	ubiquitination factor E4A	protein-coding
213657	chr7	139813771	139813930	+	0	NA	intron (NM_001166254, intron 3 of 14)	intron (NM_001166254, intron 3 of 14)	-15414	NM_030984	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
18604	chr1	165686201	165687330	+	0	NA	intron (NM_000696, intron 2 of 10)	L1MEc|LINE|L1	11797	NM_001365774	223		NM_000696	ENSG00000143149	ALDH9A1	ALDH4|ALDH7|ALDH9|E3|TMABA-DH|TMABADH|TMABALDH	aldehyde dehydrogenase 9 family member A1	protein-coding
124353	chr19	58344871	58345030	+	0	NA	TTS (NM_130786)	TTS (NM_130786)	-7020	NR_015380	503538		NR_015380	ENSG00000268895	A1BG-AS1	A1BG-AS|A1BGAS|NCRNA00181	A1BG antisense RNA 1	ncRNA
123680	chr19	55005551	55006380	+	0	NA	Intergenic	AluSx|SINE|Alu	32299	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
109718	chr19	1076071	1076230	+	0	NA	promoter-TSS (NM_001282334)	promoter-TSS (NM_001282334)	-484	NM_001282334	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
157338	chr22	44663471	44664500	+	0	NA	Intergenic	Intergenic	-4562	NM_001017529	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
188484	chr5	154769951	154770500	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	13071	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
223186	chr8	143563151	143564830	+	0	NA	TTS (NM_024736)	TTS (NM_024736)	5644	NM_024736	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
84643	chr16	30719501	30720100	+	0	NA	intron (NM_006662, intron 18 of 33)	AluJo|SINE|Alu	9263	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
53399	chr12	64700401	64701830	+	0	NA	Intergenic	Intergenic	58291	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
237785	chrX	129785301	129786100	+	0	NA	intron (NM_018990, intron 1 of 7)	intron (NM_018990, intron 1 of 7)	5751	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
55453	chr12	104603921	104604900	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	12777	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
103028	chr17	77066671	77067030	+	0	NA	Intergenic	Intergenic	-21793	NR_027058	654434		NR_027058	ENSG00000234912	SNHG20	C17orf86|LINC00338|NCRNA00338|SCARNA16HG	small nucleolar RNA host gene 20	ncRNA
136920	chr2	189762361	189763750	+	0	NA	promoter-TSS (NM_001376080)	promoter-TSS (NM_001376080)	142	NM_001354347	64172		NM_022353	ENSG00000128694	OSGEPL1	OSGEPL|Qri7	O-sialoglycoprotein endopeptidase like 1	protein-coding
115435	chr19	15315701	15316180	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluY|SINE|Alu	16599	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
66870	chr14	65077471	65078030	+	0	NA	intron (NM_145113, intron 4 of 5)	intron (NM_145113, intron 4 of 5)	-12168	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
96534	chr17	40352401	40352600	+	0	NA	exon (NM_001024809, exon 5 of 8)	exon (NM_001024809, exon 5 of 8)	-9364	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
213907	chr7	142496171	142496950	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	22033	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
114033	chr19	10936471	10937230	+	0	NA	Intergenic	Intergenic	8039	NM_138358	90580		NM_138358	ENSG00000142444	TIMM29	C19orf52|TIM29	translocase of inner mitochondrial membrane 29	protein-coding
86767	chr16	67669521	67669980	+	0	NA	TTS (NM_001012984)	TTS (NM_001012984)	2936	NM_001012984	388284		NM_001012984	ENSG00000159761	C16orf86	-	chromosome 16 open reading frame 86	protein-coding
182790	chr5	68464451	68465350	+	0	NA	Intergenic	Intergenic	172323	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
35258	chr11	860321	860680	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	16054	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
121548	chr19	47250471	47250630	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-5975	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
173134	chr4	6639871	6642400	+	0	NA	exon (NM_033296, exon 1 of 2)	exon (NM_033296, exon 1 of 2)	1044	NM_001272053	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
27553	chr10	32342351	32342450	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	4758	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
170262	chr3	184259801	184260800	+	0	NA	intron (NM_033259, intron 1 of 1)	CpG	1253	NM_033259	94032		NM_033259	ENSG00000163888	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin dependent protein kinase II inhibitor 2	protein-coding
107615	chr18	48928051	48928150	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	14707	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
7051	chr1	31957051	31957150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18732	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
129573	chr2	69976021	69976480	+	0	NA	intron (NR_033872, intron 9 of 10)	intron (NR_033872, intron 9 of 10)	-13985	NM_152792	151516		NM_152792	ENSG00000244617	ASPRV1	ADLI|MUNO|SASP|SASPase|Taps	aspartic peptidase retroviral like 1	protein-coding
126770	chr2	30251921	30252180	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	20516	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
140718	chr2	234424001	234424400	+	0	NA	Intergenic	L2c|LINE|L2	30395	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
107488	chr18	47254571	47254730	+	0	NA	Intergenic	Intergenic	-2990	NM_001278063	652991		NM_001037802	ENSG00000215474	SKOR2	CH18515|CORL2|FUSSEL18	SKI family transcriptional corepressor 2	protein-coding
110468	chr19	2012801	2013580	+	0	NA	intron (NM_017797, intron 1 of 8)	intron (NM_017797, intron 1 of 8)	2524	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
10772	chr1	77303551	77303650	+	0	NA	intron (NM_174858, intron 5 of 13)	Charlie1b|DNA|hAT-Charlie	20513	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
183158	chr5	75095451	75095550	+	0	NA	intron (NM_001164443, intron 21 of 24)	MER44B|DNA|TcMar-Tigger	-42942	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
102300	chr17	75344721	75345080	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	-55451	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
21027	chr1	202968951	202969350	+	0	NA	Intergenic	Intergenic	-1893	NM_016243	51706		NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
212534	chr7	128842071	128843280	+	0	NA	exon (NM_001127487, exon 15 of 47)	exon (NM_001127487, exon 15 of 47)	12269	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
33916	chr10	124599171	124599530	+	0	NA	intron (NM_022126, intron 6 of 6)	MIRb|SINE|MIR	-104678	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
200236	chr6	131782871	131783030	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-9222	NR_039610	100616455		NR_039610	ENSG00000266807	MIR548H5	-	microRNA 548h-5	ncRNA
239415	chrY	56675601	56675800	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-278555	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
182461	chr5	62328521	62329130	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	22619	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
8526	chr1	41003221	41004530	+	0	NA	intron (NR_125440, intron 12 of 17)	MLT1H2|LTR|ERVL-MaLR	-10715	NR_037868	100507178		NR_037868	ENSG00000281207	SLFNL1-AS1	-	SLFNL1 antisense RNA 1	ncRNA
71292	chr14	105291851	105292230	+	0	NA	intron (NM_001242787, intron 1 of 17)	AluJb|SINE|Alu	-8734	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
56854	chr12	120257201	120257800	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	-7337	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
221082	chr8	117304101	117304330	+	0	NA	Intergenic	Intergenic	169220	NM_173851	169026		NM_173851	ENSG00000164756	SLC30A8	ZNT8|ZnT-8	solute carrier family 30 member 8	protein-coding
199147	chr6	111725521	111726030	+	0	NA	intron (NM_002037, intron 3 of 13)	MLT1E1|LTR|ERVL-MaLR	33356	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
224602	chr9	20376801	20377000	+	0	NA	intron (NM_001286691, intron 5 of 10)	intron (NM_001286691, intron 5 of 10)	34338	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
129240	chr2	68355571	68355730	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-9632	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
142591	chr20	5557051	5557450	+	0	NA	intron (NM_019593, intron 19 of 19)	L2a|LINE|L2	-47248	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
173616	chr4	11368671	11369430	+	0	NA	TTS (NR_030298)	TTS (NR_030298)	223	NR_030298	693157		NR_030298	ENSG00000207716	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
92599	chr17	9562371	9562730	+	0	NA	intron (NM_004853, intron 2 of 7)	L1MC5a|LINE|L1	13270	NM_004853	9482		NM_004853	ENSG00000170310	STX8	CARB	syntaxin 8	protein-coding
218700	chr8	58572951	58573050	+	0	NA	intron (NM_001348339, intron 4 of 7)	AluSx3|SINE|Alu	19739	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
166450	chr3	114152301	114153350	+	0	NA	intron (NM_033663, intron 3 of 7)	CpG	25951	NM_001290809	1814		NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
70743	chr14	103388251	103388850	+	0	NA	intron (NM_002376, intron 1 of 15)	L1ME1|LINE|L1	3135	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
11114	chr1	86392401	86392600	+	0	NA	intron (NM_020729, intron 1 of 17)	L1PB1|LINE|L1	3561	NM_001366784	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
38278	chr11	42134851	42134950	+	0	NA	Intergenic	AluYa5|SINE|Alu	-49442	NR_135065	101928591		NR_135065		LINC02745	-	long intergenic non-protein coding RNA 2745	ncRNA
224952	chr9	33042131	33043550	+	0	NA	3' UTR (NM_018225, exon 12 of 12)	3' UTR (NM_018225, exon 12 of 12)	17567	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
30980	chr10	88028321	88029000	+	0	NA	Intergenic	Intergenic	165035	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
112510	chr19	6478101	6478650	+	0	NA	intron (NM_024898, intron 6 of 22)	AluSq2|SINE|Alu	3412	NM_001290331	79958		NM_024898	ENSG00000205744	DENND1C	FAM31C	DENN domain containing 1C	protein-coding
152590	chr22	21207371	21207730	+	0	NA	TTS (NM_001351304)	TTS (NM_001351304)	39685	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
228012	chr9	95705851	95705950	+	0	NA	Intergenic	(CAC)n|Simple_repeat|Simple_repeat	-169791	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
150416	chr21	42401521	42402400	+	0	NA	Intergenic	L1ME3|LINE|L1	-1942	NM_018961	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
110496	chr19	2043721	2044800	+	0	NA	intron (NM_199054, intron 5 of 13)	intron (NM_199054, intron 5 of 13)	6984	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
202011	chr6	152633501	152633900	+	0	NA	intron (NM_033071, intron 1 of 145)	intron (NM_033071, intron 1 of 145)	3151	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
101267	chr17	66332521	66332780	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	30037	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
231269	chr9	130011821	130012530	+	0	NA	intron (NM_001363755, intron 1 of 15)	MIR|SINE|MIR	31014	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
98908	chr17	48597521	48598630	+	0	NA	exon (NM_018952, exon 3 of 4)	exon (NM_018952, exon 3 of 4)	2117	NR_033205	404266		NR_033201	ENSG00000233101	HOXB-AS3	-	HOXB cluster antisense RNA 3	ncRNA
49439	chr12	24814601	24815000	+	0	NA	3' UTR (NM_001178093, exon 11 of 11)	3' UTR (NM_001178093, exon 11 of 11)	87422	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
186285	chr5	134549701	134549980	+	0	NA	intron (NM_001289985, intron 3 of 11)	intron (NM_001289985, intron 3 of 11)	23732	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
94889	chr17	31540051	31540850	+	0	NA	Intergenic	L2c|LINE|L2	5567	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
77845	chr15	88655271	88655430	+	0	NA	intron (NM_001303233, intron 3 of 3)	intron (NM_001303233, intron 3 of 3)	16334	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
234581	chrX	19765471	19766030	+	0	NA	intron (NM_001353892, intron 2 of 17)	L1MB4|LINE|L1	34023	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
58325	chr12	131229901	131230100	+	0	NA	Intergenic	Intergenic	64989	NR_026670	116437		NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
9301	chr1	46485621	46486080	+	0	NA	Intergenic	CpG	-3986	NM_172225	127343		NM_147192	ENSG00000197587	DMBX1	Atx|MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
32369	chr10	102398221	102398480	+	0	NA	intron (NM_001288724, intron 10 of 22)	intron (NM_001288724, intron 10 of 22)	2645	NM_001261403	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
121989	chr19	48508751	48509130	+	0	NA	exon (NM_001080434, exon 6 of 16)	exon (NM_001080434, exon 6 of 16)	4249	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
211898	chr7	111752221	111752630	+	0	NA	intron (NM_014705, intron 41 of 51)	L2c|LINE|L2	-56080	NR_103806	100506413		NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
201064	chr6	142566701	142567130	+	0	NA	intron (NR_027312, intron 1 of 2)	intron (NR_027312, intron 1 of 2)	70921	NR_027311	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
21199	chr1	203871021	203871350	+	0	NA	TTS (NM_003094)	TTS (NM_003094)	9338	NM_001328638	6635		NM_003094	ENSG00000182004	SNRPE	HYPT11|SME|Sm-E|snRNP-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
145819	chr20	45592671	45593000	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-13551	NM_130896	90199		NM_130896	ENSG00000158901	WFDC8	C20orf170|HEL-S-292|WAP8|dJ461P17.1	WAP four-disulfide core domain 8	protein-coding
75569	chr15	67062851	67063280	+	0	NA	intron (NR_135686, intron 1 of 5)	intron (NR_135686, intron 1 of 5)	1117	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
71561	chr14	106359351	106360300	+	0	NA	Intergenic	Intergenic	72151	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
25191	chr10	5629701	5630330	+	0	NA	Intergenic	MER91C|DNA|hAT-Tip100	-33897	NR_134491	105376382		NR_134491	ENSG00000242147	LASTR	LINC02657	lncRNA associated with SART3 regulation of splicing	ncRNA
26970	chr10	26706151	26706450	+	0	NA	intron (NM_001321978, intron 4 of 9)	AluYk11|SINE|Alu	8599	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
110837	chr19	2507101	2507700	+	0	NA	Intergenic	Intergenic	31273	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
138063	chr2	201660471	201660830	+	0	NA	intron (NM_033066, intron 14 of 21)	intron (NM_033066, intron 14 of 21)	-17147	NM_001044385	65062		NM_152388	ENSG00000155755	TMEM237	ALS2CR4|JBTS14	transmembrane protein 237	protein-coding
58473	chr12	132142201	132142730	+	0	NA	intron (NM_175066, intron 3 of 14)	intron (NM_175066, intron 3 of 14)	1854	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
205295	chr7	10995251	10995350	+	0	NA	intron (NM_014660, intron 4 of 16)	LTR12C|LTR|ERV1	21428	NR_033436	9678		NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
114339	chr19	12159171	12160150	+	0	NA	Intergenic	AluJr|SINE|Alu	-2926	NR_037801	90589		NM_145233	ENSG00000257591	ZNF625	-	zinc finger protein 625	protein-coding
75738	chr15	68277121	68279180	+	0	NA	5' UTR (NM_015322, exon 1 of 2)	5' UTR (NM_015322, exon 1 of 2)	405	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
80219	chr16	2175851	2176550	+	0	NA	TTS (NM_020764)	TTS (NM_020764)	20405	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
137111	chr2	190986821	190987280	+	0	NA	exon (NM_001384880, exon 12 of 24)	exon (NM_001384880, exon 12 of 24)	27121	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
34080	chr10	125064901	125065330	+	0	NA	intron (NM_001321013, intron 1 of 9)	intron (NM_001321013, intron 1 of 9)	-32245	NR_036178	100423041		NR_036178	ENSG00000264572	MIR4296	-	microRNA 4296	ncRNA
112767	chr19	7428221	7429130	+	0	NA	intron (NM_015318, intron 1 of 20)	AluJo|SINE|Alu	-11013	NM_001130955	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
163386	chr3	50498121	50498680	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	5234	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
233248	chr9	137262971	137263130	+	0	NA	exon (NM_015456, exon 5 of 13)	exon (NM_015456, exon 5 of 13)	7723	NM_015456	25920		NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
142417	chr20	3894771	3895750	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluSz|SINE|Alu	5444	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
25898	chr10	11276721	11276980	+	0	NA	intron (NM_001326330, intron 8 of 12)	intron (NM_001326330, intron 8 of 12)	67824	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
128919	chr2	64327321	64328300	+	0	NA	Intergenic	Intergenic	-12949	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
124059	chr19	55594501	55594850	+	0	NA	intron (NM_032836, intron 2 of 2)	AluY|SINE|Alu	4842	NM_032836	84922		NM_032836	ENSG00000179943	FIZ1	ZNF798	FLT3 interacting zinc finger 1	protein-coding
11535	chr1	91004221	91004480	+	0	NA	intron (NM_032186, intron 1 of 3)	L1M4|LINE|L1	17158	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
173962	chr4	25988121	25988450	+	0	NA	Intergenic	Intergenic	74093	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
130166	chr2	75677271	75677800	+	0	NA	intron (NM_003203, intron 12 of 16)	MER20|DNA|hAT-Charlie	30752	NM_014763	9801		NM_014763	ENSG00000115364	MRPL19	L15mt|L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15|bL19m	mitochondrial ribosomal protein L19	protein-coding
184572	chr5	102802451	102802750	+	0	NA	intron (NM_001364588, intron 1 of 24)	intron (NM_001364588, intron 1 of 24)	-5598	NM_001364582	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
110331	chr19	1867751	1867950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4271	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
230660	chr9	128704951	128705350	+	0	NA	intron (NM_001317926, intron 1 of 21)	intron (NM_001317926, intron 1 of 21)	2647	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
238101	chrX	136603751	136604250	+	0	NA	Intergenic	Intergenic	-35543	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
229457	chr9	121698771	121700730	+	0	NA	intron (NM_032552, intron 3 of 16)	CpG-28718	-43035	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
182338	chr5	59127221	59128330	+	0	NA	intron (NM_001364603, intron 5 of 15)	intron (NM_001364603, intron 5 of 15)	-88299	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
110004	chr19	1428001	1428200	+	0	NA	intron (NM_170711, intron 7 of 12)	intron (NM_170711, intron 7 of 12)	-10296	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
120051	chr19	42000271	42000490	+	0	NA	intron (NM_002088, intron 18 of 18)	L2|LINE|L2	-6150	NM_152296	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
227909	chr9	94167951	94168250	+	0	NA	Intergenic	Intergenic	-7857	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
239293	chrY	14344401	14345450	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-177691	NM_001365591	22829		NM_014893	ENSG00000165246	NLGN4Y	HNL4Y	neuroligin 4 Y-linked	protein-coding
39340	chr11	59247551	59248050	+	0	NA	Intergenic	Intergenic	-34873	NM_001039396	219972		NM_001039396	ENSG00000197629	MPEG1	IMD77|MPG1|MPS1|Mpg-1|P-2	macrophage expressed 1	protein-coding
12503	chr1	108077921	108078800	+	0	NA	Intergenic	Intergenic	-113180	NM_006113	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
21397	chr1	205279751	205280450	+	0	NA	Intergenic	Intergenic	22903	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
213878	chr7	142385501	142386000	+	0	NA	Intergenic	Intergenic	-88777	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
136452	chr2	176854821	176855080	+	0	NA	Intergenic	Intergenic	217196	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
117567	chr19	21328701	21329800	+	0	NA	5' UTR (NM_001297561, exon 1 of 3)	5' UTR (NM_001297561, exon 1 of 3)	160	NM_021269	7562		NM_021269	ENSG00000182141	ZNF708	KOX8|ZNF15|ZNF15L1	zinc finger protein 708	protein-coding
100587	chr17	63429201	63429530	+	0	NA	Intergenic	AluSx1|SINE|Alu	10902	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
230589	chr9	128565621	128566430	+	0	NA	intron (NM_001375312, intron 2 of 57)	intron (NM_001375312, intron 2 of 57)	13438	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
148038	chr20	63183101	63183730	+	0	NA	Intergenic	Intergenic	4915	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
119480	chr19	40445971	40447180	+	0	NA	Intergenic	Intergenic	-2240	NM_203344	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
227659	chr9	92972871	92973780	+	0	NA	intron (NM_001369951, intron 1 of 17)	AluSz|SINE|Alu	-1111	NM_033086	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
203936	chr7	1539471	1539880	+	0	NA	intron (NM_002360, intron 2 of 2)	intron (NM_002360, intron 2 of 2)	-4795	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
156106	chr22	40084501	40085080	+	0	NA	intron (NM_001024843, intron 1 of 23)	L2b|LINE|L2	39973	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
172354	chr4	1722941	1724030	+	0	NA	exon (NM_006342, exon 2 of 16)	exon (NM_006342, exon 2 of 16)	1964	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
32167	chr10	101563701	101563900	+	0	NA	Intergenic	Intergenic	24457	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
47563	chr12	4320371	4321850	+	0	NA	promoter-TSS (NM_020375)	promoter-TSS (NM_020375)	-103	NM_020375	57103		NM_020375	ENSG00000078237	TIGAR	C12orf5|FR2BP	TP53 induced glycolysis regulatory phosphatase	protein-coding
127002	chr2	36805071	36805230	+	0	NA	intron (NM_053276, intron 13 of 15)	AluJb|SINE|Alu	108443	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
8876	chr1	43565651	43566150	+	0	NA	intron (NM_001329139, intron 5 of 32)	CpG	35017	NM_002840	5792		NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase receptor type F	protein-coding
212086	chr7	115340801	115341000	+	0	NA	Intergenic	MIR|SINE|MIR	-109545	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
147791	chr20	62623401	62624600	+	0	NA	Intergenic	Intergenic	-18503	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
157461	chr22	45268601	45269850	+	0	NA	Intergenic	Intergenic	-15724	NM_006953	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
184465	chr5	100694021	100694280	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	122415	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
185063	chr5	116086351	116086750	+	0	NA	intron (NM_001308080, intron 1 of 6)	AluSq2|SINE|Alu	1088	NM_001308080	51397		NM_016144	ENSG00000145781	COMMD10	PTD002	COMM domain containing 10	protein-coding
155233	chr22	37922151	37922750	+	0	NA	intron (NM_033386, intron 6 of 15)	intron (NM_033386, intron 6 of 15)	16153	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
16141	chr1	153668171	153668330	+	0	NA	intron (NM_004515, intron 4 of 13)	intron (NM_004515, intron 4 of 13)	2743	NM_004515	3608		NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
53029	chr12	57602071	57602500	+	0	NA	3' UTR (NM_024779, exon 10 of 10)	3' UTR (NM_024779, exon 10 of 10)	-2539	NM_001286245	196403		NM_178502	ENSG00000178498	DTX3	RNF154|deltex3	deltex E3 ubiquitin ligase 3	protein-coding
83469	chr16	27369921	27370380	+	0	NA	Intergenic	Intergenic	-32024	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
99545	chr17	50367501	50368100	+	0	NA	TTS (NM_016504)	TTS (NM_016504)	5384	NM_016504	51264		NM_016504	ENSG00000108826	MRPL27	L27mt|bL27m	mitochondrial ribosomal protein L27	protein-coding
149587	chr21	33261351	33262280	+	0	NA	intron (NM_001385055, intron 8 of 9)	AluJb|SINE|Alu	4445	NR_038974	100288432		NR_038974		IL10RB-DT	IFNAR2-AS1|IL10RB-AS1	IL10RB divergent transcript	ncRNA
147460	chr20	59017951	59018250	+	0	NA	Intergenic	Intergenic	-1329	NM_030773	81027		NM_030773	ENSG00000101162	TUBB1	MACTHC1	tubulin beta 1 class VI	protein-coding
210207	chr7	99135801	99136000	+	0	NA	intron (NM_181349, intron 1 of 17)	L1ME4b|LINE|L1	8208	NM_181349	57154		NM_020429	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
57007	chr12	120578251	120578550	+	0	NA	TTS (NM_198202)	TTS (NM_198202)	2998	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
38758	chr11	47156821	47157200	+	0	NA	intron (NM_001003676, intron 5 of 7)	intron (NM_001003676, intron 5 of 7)	19869	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
60300	chr13	40640221	40640550	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	26256	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
157790	chr22	46771451	46772000	+	0	NA	intron (NR_104292, intron 2 of 13)	AluSz|SINE|Alu	-2202	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
117710	chr19	29260421	29260730	+	0	NA	Intergenic	Intergenic	-47424	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
16848	chr1	155690621	155691030	+	0	NA	intron (NM_033657, intron 1 of 12)	AluJr|SINE|Alu	1731	NM_033657	7818		NM_004632	ENSG00000132676	DAP3	DAP-3|MRP-S29|MRPS29|S29mt|bMRP-10|mS29	death associated protein 3	protein-coding
189352	chr5	172283341	172285380	+	0	NA	promoter-TSS (NM_152277)	promoter-TSS (NM_152277)	-596	NM_152277	92181		NM_152277	ENSG00000168246	UBTD2	DCUBP	ubiquitin domain containing 2	protein-coding
193530	chr6	30593351	30593450	+	0	NA	Intergenic	MIR|SINE|MIR	9068	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
168728	chr3	150759051	150759350	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	3969	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
166044	chr3	108605471	108605900	+	0	NA	intron (NM_014648, intron 2 of 32)	MER1B|DNA|hAT-Charlie	15963	NM_014648	9666		NM_014648	ENSG00000198919	DZIP3	PPP1R66|UURF2|hRUL138	DAZ interacting zinc finger protein 3	protein-coding
10434	chr1	66239971	66240130	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-92058	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
205413	chr7	16620071	16620380	+	0	NA	intron (NM_020319, intron 4 of 9)	intron (NM_020319, intron 4 of 9)	25529	NM_020319	57037		NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
202884	chr6	159976101	159976300	+	0	NA	intron (NM_000876, intron 1 of 47)	L1M5|LINE|L1	7118	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
204015	chr7	1909821	1910080	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	30621	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
208955	chr7	74183571	74184350	+	0	NA	intron (NM_022170, intron 1 of 6)	intron (NM_022170, intron 1 of 6)	-7238	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
166922	chr3	125051601	125052850	+	0	NA	intron (NM_020733, intron 1 of 16)	intron (NM_020733, intron 1 of 16)	3772	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
185369	chr5	127572901	127573100	+	0	NA	Intergenic	L2b|LINE|L2	55360	NM_001286808	133619		NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
58095	chr12	124694121	124694580	+	0	NA	Intergenic	Intergenic	-126738	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
75820	chr15	69410351	69410750	+	0	NA	intron (NR_132969, intron 1 of 1)	intron (NR_132969, intron 1 of 1)	-3799	NR_160295	9493		NM_004856	ENSG00000137807	KIF23	CDA3|CDAIII|CDAN3|CDAN3A|CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
96115	chr17	39641421	39641680	+	0	NA	intron (NM_001165938, intron 1 of 13)	intron (NM_001165938, intron 1 of 13)	4406	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
187590	chr5	142844201	142844400	+	0	NA	intron (NM_001349547, intron 1 of 21)	AluSx1|SINE|Alu	24610	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
1258	chr1	2302821	2303080	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	49711	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
35778	chr11	2166001	2166650	+	0	NA	intron (NM_000360, intron 9 of 12)	CpG	-5116	NM_001291897	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
149806	chr21	34989171	34989330	+	0	NA	intron (NM_001754, intron 2 of 8)	AluSx1|SINE|Alu	50176	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
132813	chr2	110555301	110556030	+	0	NA	intron (NM_032260, intron 8 of 19).2	AluY|SINE|Alu	21235	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
135484	chr2	161426871	161427880	+	0	NA	Intergenic	CpG	11078	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
208605	chr7	72951701	72952180	+	0	NA	TTS (NM_001257190)	TTS (NM_001257190)	2823	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
19511	chr1	175211801	175212250	+	0	NA	Intergenic	Intergenic	-19038	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
201408	chr6	145958151	145958250	+	0	NA	intron (NM_001370328, intron 1 of 31)	L1ME1|LINE|L1	5897	NM_173082	257218		NM_173082	ENSG00000146414	SHPRH	RAD5|bA545I5.2	SNF2 histone linker PHD RING helicase	protein-coding
217734	chr8	30657201	30659180	+	0	NA	promoter-TSS (NM_002095)	promoter-TSS (NM_002095)	46	NM_002095	2961		NM_002095	ENSG00000197265	GTF2E2	FE|TF2E2|TFIIE-B|TTD6	general transcription factor IIE subunit 2	protein-coding
88420	chr16	84713771	84714200	+	0	NA	intron (NM_001272075, intron 2 of 14)	intron (NM_001272075, intron 2 of 14)	13985	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
209394	chr7	76320971	76321130	+	0	NA	Intergenic	AluJr|SINE|Alu	18377	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
58060	chr12	124508601	124509030	+	0	NA	intron (NM_001077261, intron 2 of 47)	intron (NM_001077261, intron 2 of 47)	58797	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
54541	chr12	92137201	92137800	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	4213	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
1489	chr1	2756521	2756850	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	44183	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
10252	chr1	64137101	64137330	+	0	NA	intron (NM_001083592, intron 4 of 6)	intron (NM_001083592, intron 4 of 6)	-23424	NR_110665	101927034		NR_110665	ENSG00000223949	ROR1-AS1	-	ROR1 antisense RNA 1	ncRNA
51576	chr12	52613401	52614000	+	0	NA	non-coding (NR_126005, exon 3 of 3)	non-coding (NR_126005, exon 3 of 3)	3849	NR_126005	100127967		NR_126005	ENSG00000257495	KRT73-AS1	-	KRT73 antisense RNA 1	ncRNA
144595	chr20	35799401	35799850	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	27610	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
224420	chr9	15211501	15211800	+	0	NA	intron (NM_001168341, intron 2 of 17)	intron (NM_001168341, intron 2 of 17)	38568	NM_001168342	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
230948	chr9	129419021	129419280	+	0	NA	Intergenic	AluSp|SINE|Alu	-69510	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
23084	chr1	226651451	226652230	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	23228	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
52172	chr12	54296721	54297280	+	0	NA	intron (NM_001136023, intron 1 of 2)	intron (NM_001136023, intron 1 of 2)	-1221	NM_006163	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
231137	chr9	129849101	129849300	+	0	NA	intron (NM_001008563, intron 1 of 25)	intron (NM_001008563, intron 1 of 25)	13742	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
196340	chr6	43178121	43178580	+	0	NA	exon (NM_003131, exon 5 of 7)	exon (NM_003131, exon 5 of 7)	-3846	NM_015089	23113		NM_015089	ENSG00000112659	CUL9	H7AP1|PARC	cullin 9	protein-coding
101139	chr17	65042151	65042900	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluSz|SINE|Alu	13249	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
67344	chr14	69668951	69669600	+	0	NA	intron (NM_014734, intron 2 of 5)	AluSc|SINE|Alu	57679	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
196875	chr6	50816071	50816300	+	0	NA	Intergenic	Intergenic	-2686	NM_003221	7021		NM_003221	ENSG00000008196	TFAP2B	AP-2B|AP-2beta|AP2-B|PDA2	transcription factor AP-2 beta	protein-coding
125874	chr2	24576171	24576830	+	0	NA	intron (NM_001362955, intron 3 of 23)	L1MEc|LINE|L1	-7977	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
130198	chr2	84511001	84511400	+	0	NA	Intergenic	L1PA4|LINE|L1	-5298	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
222862	chr8	142710151	142710480	+	0	NA	intron (NR_038925, intron 1 of 2)	LTR13|LTR|ERVK	10204	NM_017527	54742		NM_017527	ENSG00000160886	LY6K	CT97|HSJ001348|URLC10|ly-6K	lymphocyte antigen 6 family member K	protein-coding
208861	chr7	73720821	73721200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1341	NM_001165903	6804		NM_004603	ENSG00000106089	STX1A	HPC-1|P35-1|STX1|SYN1A	syntaxin 1A	protein-coding
79164	chr16	285771	286330	+	0	NA	intron (NM_006849, intron 7 of 10)	intron (NM_006849, intron 7 of 10)	2886	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
78238	chr15	90667221	90667680	+	0	NA	intron (NR_120372, intron 2 of 3)	L1MC1|LINE|L1	7216	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
163501	chr3	51383301	51383630	+	0	NA	3' UTR (NM_004947, exon 53 of 53)	3' UTR (NM_004947, exon 53 of 53)	-1826	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
171582	chr3	197022951	197023630	+	0	NA	intron (NM_033316, intron 4 of 6)	intron (NM_033316, intron 4 of 6)	6527	NM_033316	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
53197	chr12	62256821	62257150	+	0	NA	Intergenic	Intergenic	-3355	NM_001351162	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
100806	chr17	64057551	64057850	+	0	NA	intron (NM_001433, intron 12 of 21)	intron (NM_001433, intron 12 of 21)	-37066	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
31949	chr10	100668651	100668950	+	0	NA	Intergenic	Intergenic	-66596	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
35941	chr11	2467151	2468150	+	0	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	6196	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
126123	chr2	26052621	26053050	+	0	NA	intron (NM_016131, intron 1 of 5)	intron (NM_016131, intron 1 of 5)	18751	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
74101	chr15	52795421	52795750	+	0	NA	Intergenic	Intergenic	-5249	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
45632	chr11	118932371	118932530	+	0	NA	Intergenic	AluSg|SINE|Alu	-6524	NM_001378213	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
176647	chr4	99938251	99938800	+	0	NA	intron (NM_001031723, intron 1 of 7)	L1MB8|LINE|L1	8093	NM_001278311	79982		NM_024920	ENSG00000164031	DNAJB14	EGNR9427|PRO34683	DnaJ heat shock protein family (Hsp40) member B14	protein-coding
148974	chr21	13950471	13950630	+	0	NA	intron (NR_027270, intron 4 of 5)	intron (NR_027270, intron 4 of 5)	-16671	NR_146644	110091776		NR_146644		LOC110091776	-	ankyrin repeat domain 18B pseudogene	pseudo
234306	chrX	13716751	13717450	+	0	NA	intron (NM_001128835, intron 3 of 5)	intron (NM_001128835, intron 3 of 5)	17520	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
232585	chr9	136399301	136400950	+	0	NA	Intergenic	CpG	-1688	NM_003086	6621		NM_003086	ENSG00000165684	SNAPC4	NEDRSO|PTFalpha|SNAP190	small nuclear RNA activating complex polypeptide 4	protein-coding
154772	chr22	36525451	36525750	+	0	NA	intron (NR_156418, intron 3 of 14)	intron (NR_156418, intron 3 of 14)	3566	NM_003753	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
69416	chr14	94064901	94065500	+	0	NA	intron (NM_020414, intron 2 of 8).2	AluSc|SINE|Alu	16002	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
92825	chr17	16194321	16194980	+	0	NA	promoter-TSS (NM_001190438)	promoter-TSS (NM_001190438)	-11	NM_001190438	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
74808	chr15	63447421	63447680	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-56961	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
131705	chr2	97745401	97746380	+	0	NA	Intergenic	L1MB4|LINE|L1	12590	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
217633	chr8	30058851	30059030	+	0	NA	Intergenic	AluSz6|SINE|Alu	24124	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
65064	chr14	39382851	39383850	+	0	NA	intron (NM_001354154, intron 23 of 23)	Tigger1|DNA|TcMar-Tigger	49150	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
78989	chr15	101743701	101743900	+	0	NA	intron (NR_168283, intron 2 of 2)	intron (NR_168283, intron 2 of 2)	1938	NR_168283	100128108		NM_001321551	ENSG00000290760	UBE2Q2P13	-	UBE2Q2 pseudogene 13	pseudo
178512	chr4	150830171	150830530	+	0	NA	intron (NM_001367550, intron 29 of 56)	MLT1G|LTR|ERVL-MaLR	184917	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
220732	chr8	102105971	102106130	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	18284	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
27214	chr10	28628101	28629100	+	0	NA	Intergenic	Intergenic	-48921	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
175795	chr4	77806001	77806600	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluSp|SINE|Alu	12764	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
60895	chr13	46157671	46158050	+	0	NA	intron (NM_002298, intron 4 of 15)	AluSx|SINE|Alu	24317	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
60401	chr13	40961351	40961980	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	20617	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
158846	chr3	9809501	9811080	+	0	NA	promoter-TSS (NR_037162)	promoter-TSS (NR_037162)	28	NR_037162	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
74924	chr15	63712451	63713350	+	0	NA	intron (NM_003922, intron 23 of 77)	intron (NM_003922, intron 23 of 77)	-112073	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
133286	chr2	113553671	113553830	+	0	NA	intron (NR_146439, intron 1 of 3)	intron (NR_146439, intron 1 of 3)	-11060	NR_121187	103344932		NR_121185	ENSG00000231943	PGM5P4-AS1	FAM233C	PGM5P4 antisense RNA 1	ncRNA
48788	chr12	11762221	11762680	+	0	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	112776	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
169485	chr3	169744671	169744830	+	0	NA	Intergenic	Intergenic	20310	NR_001566	7012		NR_001566	ENSG00000277925	TERC	DKCA1|PFBMFT2|SCARNA19|TER|TR|TRC3|hTR	telomerase RNA component	ncRNA
151758	chr22	17920151	17920450	+	0	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-13414	NM_001122731	57553		NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
152624	chr22	21436801	21437100	+	0	NA	intron (NM_015094, intron 1 of 2)	(GGTGGAG)n|Simple_repeat|Simple_repeat	19579	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
55847	chr12	109097321	109098680	+	0	NA	promoter-TSS (NM_003362)	promoter-TSS (NM_003362)	-172	NM_003362	7374		NM_003362	ENSG00000076248	UNG	DGU|HIGM4|HIGM5|UDG|UNG1|UNG15|UNG2	uracil DNA glycosylase	protein-coding
170113	chr3	183180371	183180680	+	0	NA	intron (NM_015078, intron 27 of 29)	(CCTCC)n|Simple_repeat|Simple_repeat	-17791	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
60860	chr13	45701471	45701830	+	0	NA	promoter-TSS (NR_125786)	promoter-TSS (NR_125786)	-466	NR_125786	103752581		NR_125786		LINC01055	-	long intergenic non-protein coding RNA 1055	ncRNA
189250	chr5	172008871	172009030	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-2312	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
236841	chrX	79258851	79259780	+	0	NA	Intergenic	Intergenic	108019	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
33998	chr10	124682371	124682730	+	0	NA	intron (NM_014661, intron 3 of 4)	MIR3|SINE|MIR	-21478	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
11354	chr1	89615821	89616280	+	0	NA	Intergenic	Intergenic	16844	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
169618	chr3	171263751	171264050	+	0	NA	intron (NM_001161560, intron 2 of 31)	L2c|LINE|L2	-157141	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
215144	chr7	155458571	155459250	+	0	NA	exon (NM_001427, exon 1 of 2)	exon (NM_001427, exon 1 of 2)	781	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
184049	chr5	91382551	91383980	+	0	NA	promoter-TSS (NM_020801)	promoter-TSS (NM_020801)	52	NM_001329672	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
152723	chr22	21659721	21659980	+	0	NA	intron (NR_169734, intron 3 of 4)	AluJr4|SINE|Alu	2090	NR_169733	107985532		NR_169729		LOC107985532	-	uncharacterized LOC107985532	pseudo
10506	chr1	66752021	66752650	+	0	NA	promoter-TSS (NM_152665)	promoter-TSS (NM_152665)	-124	NM_152665	200132		NM_152665	ENSG00000152760	DYNLT5	TCTEX1D1	dynein light chain Tctex-type family member 5	protein-coding
221807	chr8	127989021	127989280	+	0	NA	intron (NR_003367, intron 4 of 8)	intron (NR_003367, intron 4 of 8)	-19748	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
70024	chr14	100093021	100094030	+	0	NA	intron (NM_016337, intron 2 of 13)	intron (NM_016337, intron 2 of 13)	15989	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
155914	chr22	39566001	39566400	+	0	NA	Intergenic	(TGATGG)n|Simple_repeat|Simple_repeat	-4553	NM_021096	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
115994	chr19	17094501	17094900	+	0	NA	intron (NM_004145, intron 1 of 39)	AluJb|SINE|Alu	2465	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
192309	chr6	21594401	21594680	+	0	NA	exon (NM_003107, exon 1 of 1)	exon (NM_003107, exon 1 of 1)	789	NM_003107	6659		NM_003107	ENSG00000124766	SOX4	CSS10|EVI16	SRY-box transcription factor 4	protein-coding
167715	chr3	130922471	130922830	+	0	NA	intron (NM_001001487, intron 2 of 28)	L1MB1|LINE|L1	28100	NM_014382	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
148529	chr20	64105571	64105730	+	0	NA	3' UTR (NM_005286, exon 2 of 2)	3' UTR (NM_005286, exon 2 of 2)	1915	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
179388	chr4	183642601	183642800	+	0	NA	intron (NM_152682, intron 6 of 6)	Charlie1|DNA|hAT-Charlie	16485	NM_152682	201965		NM_152682	ENSG00000182552	RWDD4	FAM28A|RWDD4A	RWD domain containing 4	protein-coding
65916	chr14	55301671	55301830	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	29596	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
80777	chr16	3188971	3189980	+	0	NA	intron (NM_012360, intron 1 of 2)	CpG	353	NM_012360	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
127381	chr2	39778621	39779980	+	0	NA	promoter-TSS (NM_001321480)	promoter-TSS (NM_001321480)	-24	NM_001321477	80745		NM_025264	ENSG00000138050	THUMPD2	C2orf8	THUMP domain containing 2	protein-coding
199772	chr6	125954621	125955080	+	0	NA	Intergenic	LTR15|LTR|ERV1	-1920	NM_138571	135114		NM_138571	ENSG00000111911	HINT3	HINT4	histidine triad nucleotide binding protein 3	protein-coding
143638	chr20	31845171	31845530	+	0	NA	exon (NM_004118, exon 1 of 1)	exon (NM_004118, exon 1 of 1)	254	NM_004118	2307		NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
67793	chr14	73762201	73763480	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-2537	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
184192	chr5	95842971	95843730	+	0	NA	intron (NR_157807, intron 2 of 2)	MIRb|SINE|MIR	8523	NR_157807	102724720		NR_157807		LOC102724720	-	uncharacterized LOC102724720	ncRNA
63258	chr13	113948971	113949250	+	0	NA	Intergenic	MER21C|LTR|ERVL	-20119	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
223966	chr9	2009471	2009630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5797	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
39441	chr11	60926851	60927600	+	0	NA	exon (NM_178031, exon 2 of 11)	exon (NM_178031, exon 2 of 11)	2765	NM_178031	54972		NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
125691	chr2	20340721	20341180	+	0	NA	intron (NM_001352925, intron 1 of 19)	MIRb|SINE|MIR	9894	NM_001352927	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
16762	chr1	155330171	155330930	+	0	NA	exon (NM_001278229, exon 9 of 9)	exon (NM_001278229, exon 9 of 9)	6043	NM_001278230	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
172898	chr4	3481771	3482180	+	0	NA	intron (NM_001301071, intron 4 of 9)	intron (NM_001301071, intron 4 of 9)	-2569	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
17299	chr1	156444351	156444850	+	0	NA	Intergenic	Intergenic	-15052	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
89889	chr16	89668271	89668830	+	0	NA	intron (NM_001271910, intron 2 of 2)	intron (NM_001271910, intron 2 of 2)	10482	NR_073515	124045		NM_153025	ENSG00000167523	SPATA33	C16orf55	spermatogenesis associated 33	protein-coding
45106	chr11	117097501	117099180	+	0	NA	promoter-TSS (NM_001281749)	promoter-TSS (NM_001281749)	88	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
48123	chr12	7892001	7892200	+	0	NA	promoter-TSS (NM_001286237)	promoter-TSS (NM_001286237)	-904	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
52324	chr12	54967301	54967700	+	0	NA	intron (NM_014796, intron 2 of 8)	intron (NM_014796, intron 2 of 8)	6232	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
24060	chr1	235307451	235307830	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-19576	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
11633	chr1	91751201	91751400	+	0	NA	intron (NR_036634, intron 5 of 17)	intron (NR_036634, intron 5 of 17)	134851	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
196242	chr6	42887401	42887600	+	0	NA	non-coding (NR_134563, exon 6 of 6)	non-coding (NR_134563, exon 6 of 6)	3321	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
228831	chr9	112094821	112095530	+	0	NA	intron (NM_022486, intron 10 of 16)	intron (NM_022486, intron 10 of 16)	80122	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
184227	chr5	96538721	96539180	+	0	NA	intron (NR_130776, intron 4 of 4)	MamGypsy2-I|LTR|Gypsy	-105702	NM_000439	5122		NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC1/3|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
202832	chr6	159730551	159730650	+	0	NA	intron (NM_001270531, intron 1 of 7)	intron (NM_001270531, intron 1 of 7)	3094	NM_001270533	9589		NM_004906	ENSG00000146457	WTAP	Mum2	WT1 associated protein	protein-coding
190305	chr5	179600921	179601400	+	0	NA	intron (NR_110560, intron 3 of 8).2	AluSx1|SINE|Alu	2581	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
27722	chr10	34349051	34349150	+	0	NA	intron (NM_019619, intron 14 of 24)	intron (NM_019619, intron 14 of 24)	466196	NM_001184794	56288		NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
233316	chr9	137425001	137425750	+	0	NA	intron (NM_001256068, intron 1 of 11)	intron (NM_001256068, intron 1 of 11)	1980	NM_001256068	10811		NM_006647	ENSG00000188747	NOXA1	NY-CO-31|SDCCAG31|p51NOX	NADPH oxidase activator 1	protein-coding
228516	chr9	100409401	100409600	+	0	NA	Intergenic	L2b|LINE|L2	-17643	NM_080655	91283		NM_080655	ENSG00000066697	MSANTD3	C9orf30|L8	Myb/SANT DNA binding domain containing 3	protein-coding
192003	chr6	16324721	16325050	+	0	NA	intron (NM_000332, intron 8 of 8)	MER74A|LTR|ERVL	86298	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
170736	chr3	188188951	188189250	+	0	NA	intron (NM_001375462, intron 1 of 11)	AluJb|SINE|Alu	10557	NR_024413	401105		NM_207488	ENSG00000279891	FLJ42393	AVPC1948	uncharacterized LOC401105	ncRNA
121169	chr19	46412801	46413750	+	0	NA	5' UTR (NM_032040, exon 1 of 1)	5' UTR (NM_032040, exon 1 of 1)	289	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
106376	chr18	13289751	13290050	+	0	NA	intron (NM_001378099, intron 2 of 6)	intron (NM_001378099, intron 2 of 6)	12538	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207446	chr7	44572451	44572750	+	0	NA	exon (NM_001257189, exon 4 of 13)	exon (NM_001257189, exon 4 of 13)	1938	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
77933	chr15	89324371	89324530	+	0	NA	intron (NM_002693, intron 10 of 22)	intron (NM_002693, intron 10 of 22)	2360	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
87508	chr16	71850021	71850280	+	0	NA	exon (NM_001137675, exon 3 of 3)	exon (NM_001137675, exon 3 of 3)	4174	NM_001137675	342371		NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1 like	protein-coding
115129	chr19	14373751	14374100	+	0	NA	Intergenic	AluJo|SINE|Alu	-7219	NM_001784	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
184343	chr5	96959771	96960180	+	0	NA	intron (NM_175920, intron 1 of 17)	AluSx|SINE|Alu	1542	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
28541	chr10	50540101	50540700	+	0	NA	intron (NM_147156, intron 2 of 10)	intron (NM_147156, intron 2 of 10)	83556	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
12605	chr1	109073371	109073530	+	0	NA	intron (NM_005645, intron 2 of 3)	SVA_B|Retroposon|SVA	2553	NM_005645	6884		NM_005645	ENSG00000197780	TAF13	MRT60|TAF(II)18|TAF2K|TAFII-18|TAFII18	TATA-box binding protein associated factor 13	protein-coding
22389	chr1	218377171	218377580	+	0	NA	intron (NR_138149, intron 2 of 7)	intron (NR_138149, intron 2 of 7)	-31697	NR_046268	728463		NR_046268		TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
122706	chr19	49933751	49933930	+	0	NA	TTS (NM_001290746)	TTS (NM_001290746)	776	NR_039906	100616483		NR_039906	ENSG00000283842	MIR4751	-	microRNA 4751	ncRNA
24095	chr1	235411501	235412850	+	0	NA	intron (NM_001287801, intron 3 of 17).2	(TCCCC)n|Simple_repeat|Simple_repeat	44748	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
164511	chr3	63136671	63136930	+	0	NA	Intergenic	L1PA2|LINE|L1	34112	NR_027104	285401		NR_027104	ENSG00000244342	LINC00698	-	long intergenic non-protein coding RNA 698	ncRNA
139646	chr2	226772371	226773180	+	0	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	27045	NM_005544	3667		NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
135432	chr2	161167971	161168130	+	0	NA	intron (NM_001199135, intron 1 of 7)	LTR56|LTR|ERV1	7622	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
74368	chr15	58752221	58752850	+	0	NA	Intergenic	Intergenic	-2828	NM_001320570	102		NM_001110	ENSG00000137845	ADAM10	AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz	ADAM metallopeptidase domain 10	protein-coding
223998	chr9	2154901	2155600	+	0	NA	intron (NM_003070, intron 27 of 33)	intron (NM_003070, intron 27 of 33)	-2412	NM_001289398	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
113889	chr19	10676051	10676750	+	0	NA	intron (NM_153464, intron 4 of 17)	AluY|SINE|Alu	22054	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
220683	chr8	101223851	101224550	+	0	NA	Intergenic	CpG	-18136	NM_001267709	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
182523	chr5	65483691	65484280	+	0	NA	Intergenic	Intergenic	-2065	NM_197941	11174		NM_014273	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein-coding
200762	chr6	137822351	137823080	+	0	NA	TTS (NR_049793)	TTS (NR_049793)	-44544	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
239140	chrY	11320671	11321350	+	0	NA	Intergenic	Intergenic	1100580	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
217782	chr8	33482171	33482880	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2657	NM_032509	84549		NM_032509	ENSG00000198042	MAK16	MAK16L|RBM13	MAK16 homolog	protein-coding
130578	chr2	85827251	85828100	+	0	NA	TTS (NR_038888)	TTS (NR_038888)	12545	NR_038888	284950		NR_038888		LOC284950	-	uncharacterized LOC284950	ncRNA
147873	chr20	62826351	62827280	+	0	NA	exon (NM_001853, exon 15 of 32)	exon (NM_001853, exon 15 of 32)	9765	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
164836	chr3	71022751	71023050	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	42024	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
172866	chr4	3301921	3303450	+	0	NA	Intergenic	Intergenic	-11462	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
204154	chr7	2387201	2387600	+	0	NA	Intergenic	Intergenic	-16211	NM_001243795	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
6737	chr1	30710321	30710580	+	0	NA	TTS (NM_002379)	TTS (NM_002379)	-8322	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
237553	chrX	120628301	120628850	+	0	NA	intron (NM_152692, intron 1 of 2)	MIR3|SINE|MIR	1479	NM_001011551	29071		NM_152692	ENSG00000171155	C1GALT1C1	AHUS8|C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS	C1GALT1 specific chaperone 1	protein-coding
25816	chr10	11198751	11199400	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	34045	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
221586	chr8	125425321	125425580	+	0	NA	Intergenic	L2b|LINE|L2	-4908	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
47665	chr12	6329471	6329830	+	0	NA	intron (NR_144351, intron 8 of 8)	CpG	12426	NM_001346091	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
227211	chr9	88387201	88389300	+	0	NA	promoter-TSS (NM_006717)	promoter-TSS (NM_006717)	-194	NM_006717	10927		NM_006717	ENSG00000106723	SPIN1	SPIN|TDRD24	spindlin 1	protein-coding
20960	chr1	202339621	202340200	+	0	NA	intron (NM_014176, intron 1 of 6)	intron (NM_014176, intron 1 of 6)	2026	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
97726	chr17	44361371	44362000	+	0	NA	intron (NM_198475, intron 1 of 7)	intron (NM_198475, intron 1 of 7)	2168	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
164497	chr3	60160371	60160730	+	0	NA	intron (NM_001166243, intron 5 of 9)	intron (NM_001166243, intron 5 of 9)	-79641	NM_001320901	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
93524	chr17	19024771	19024930	+	0	NA	intron (NM_006613, intron 3 of 4)	intron (NM_006613, intron 3 of 4)	-20086	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
74677	chr15	62056521	62056980	+	0	NA	intron (NM_017684, intron 1 of 82)	LTR13|LTR|ERVK	3697	NM_017684	54832		NM_017684	ENSG00000129003	VPS13C	BLTP5C|PARK23	vacuolar protein sorting 13 homolog C	protein-coding
123148	chr19	52170151	52170630	+	0	NA	intron (NM_001102657, intron 1 of 4)	intron (NM_001102657, intron 1 of 4)	1231	NM_001102657	162962		NM_001102657	ENSG00000196267	ZNF836	-	zinc finger protein 836	protein-coding
171534	chr3	196738151	196738450	+	0	NA	Intergenic	L1MEd|LINE|L1	-1557	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
52968	chr12	57473371	57473530	+	0	NA	intron (NM_001367424, intron 14 of 14)	intron (NM_001367424, intron 14 of 14)	4417	NM_001319851	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
141456	chr2	241052651	241053650	+	0	NA	intron (NM_001080437, intron 15 of 31)	CpG	49137	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
144175	chr20	34087771	34088130	+	0	NA	TTS (NM_001316363)	TTS (NM_001316363)	24293	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
156253	chr22	40405971	40406430	+	0	NA	exon (NM_001350041, exon 9 of 22)	exon (NM_001350041, exon 9 of 22)	35606	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
88321	chr16	84308251	84308350	+	0	NA	intron (NM_021197, intron 1 of 6)	intron (NM_021197, intron 1 of 6)	13422	NM_001282467	58189		NM_021197	ENSG00000103175	WFDC1	PS20	WAP four-disulfide core domain 1	protein-coding
139990	chr2	230928351	230928830	+	0	NA	Intergenic	Intergenic	-3348	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
47690	chr12	6372451	6372830	+	0	NA	intron (NM_001159575, intron 2 of 12)	intron (NM_001159575, intron 2 of 12)	-2520	NM_001270987	4055		NM_002342	ENSG00000111321	LTBR	D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	lymphotoxin beta receptor	protein-coding
209858	chr7	90345821	90347350	+	0	NA	promoter-TSS (NM_001042717)	promoter-TSS (NM_001042717)	-131	NM_033107	85865		NM_033107	ENSG00000105793	GTPBP10	ObgH2|UG0751c10	GTP binding protein 10	protein-coding
99643	chr17	50627701	50628680	+	0	NA	TTS (NM_001256330)	TTS (NM_001256330)	-6691	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
20995	chr1	202730451	202730550	+	0	NA	intron (NM_006618, intron 25 of 26)	intron (NM_006618, intron 25 of 26)	-20046	NM_177402	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
219412	chr8	70651501	70652100	+	0	NA	intron (NM_016027, intron 3 of 6)	intron (NM_016027, intron 3 of 6)	17385	NM_016027	51110		NM_016027	ENSG00000147592	LACTB2	CGI-83	lactamase beta 2	protein-coding
203005	chr6	163410821	163411580	+	0	NA	Intergenic	MIRb|SINE|MIR	2750	NR_037593	100526820		NR_037593	ENSG00000270419	CAHM	LINC00468	colon adenocarcinoma hypermethylated	ncRNA
95812	chr17	38743601	38744380	+	0	NA	intron (NM_001369614, intron 1 of 9)	intron (NM_001369614, intron 1 of 9)	2638	NM_001369615	7703		NM_007144	ENSG00000277258	PCGF2	MEL-18|RNF110|TPFS|ZNF144	polycomb group ring finger 2	protein-coding
181558	chr5	43130821	43131080	+	0	NA	intron (NM_001330710, intron 3 of 5)	AluSx1|SINE|Alu	9385	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
220784	chr8	102591951	102592130	+	0	NA	Intergenic	AluY|SINE|Alu	40451	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
64686	chr14	32254821	32255250	+	0	NA	Intergenic	Intergenic	-51766	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
187170	chr5	140634551	140635500	+	0	NA	Intergenic	AluSp|SINE|Alu	-1324	NM_001040021	929		NM_000591	ENSG00000170458	CD14	-	CD14 molecule	protein-coding
168269	chr3	141459921	141461080	+	0	NA	Intergenic	Intergenic	-26527	NM_001303246	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
13740	chr1	116847921	116848350	+	0	NA	Intergenic	Intergenic	-61781	NM_020440	5738		NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
70394	chr14	101962101	101962700	+	0	NA	Intergenic	Intergenic	-2173	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
45939	chr11	121292071	121293450	+	0	NA	promoter-TSS (NM_006918)	promoter-TSS (NM_006918)	-11	NM_006918	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
96355	chr17	40074571	40074730	+	0	NA	intron (NM_199334, intron 2 of 8)	intron (NM_199334, intron 2 of 8)	11685	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
170360	chr3	184582251	184582550	+	0	NA	TTS (NM_004443)	TTS (NM_004443)	20615	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
41931	chr11	67297101	67297300	+	0	NA	intron (NM_207354, intron 6 of 14)	L1MB7|LINE|L1	-6330	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
66785	chr14	64696401	64697380	+	0	NA	Intergenic	Intergenic	-7534	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
91587	chr17	5234501	5234900	+	0	NA	non-coding (NR_034082, exon 7 of 8)	non-coding (NR_034082, exon 7 of 8)	160	NM_001319190	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
78682	chr15	95856551	95856850	+	0	NA	Intergenic	Intergenic	271141	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
23841	chr1	234610701	234612100	+	0	NA	Intergenic	Intergenic	-1875	NM_182972	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
42422	chr11	69080051	69081050	+	0	NA	intron (NM_139075, intron 17 of 24)	intron (NM_139075, intron 17 of 24)	-2626	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
232904	chr9	136856251	136856350	+	0	NA	intron (NM_206920, intron 14 of 26)	intron (NM_206920, intron 14 of 26)	3954	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
165430	chr3	98521921	98523830	+	0	NA	promoter-TSS (NM_001040181)	promoter-TSS (NM_001040181)	27	NM_001040181	56650		NM_019895	ENSG00000080822	CLDND1	C3orf4|GENX-3745|Z38	claudin domain containing 1	protein-coding
220266	chr8	97708701	97708900	+	0	NA	intron (NM_178812, intron 8 of 11)	AluSz|SINE|Alu	64616	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
45288	chr11	118050151	118050530	+	0	NA	intron (NM_001354434, intron 2 of 5)	intron (NM_001354434, intron 2 of 5)	-26672	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
118254	chr19	35252421	35252880	+	0	NA	intron (NM_001260490, intron 2 of 6)	AluSx|SINE|Alu	3648	NM_001385215	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
128201	chr2	53966671	53966830	+	0	NA	intron (NM_014614, intron 1 of 46)	AluSg|SINE|Alu	4243	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
102202	chr17	75178271	75179230	+	0	NA	intron (NM_006937, intron 2 of 3)	AluJb|SINE|Alu	4209	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
188432	chr5	154404101	154404480	+	0	NA	intron (NM_198321, intron 8 of 11)	intron (NM_198321, intron 8 of 11)	41532	NR_037897	386627		NR_037897	ENSG00000245275	SAP30L-AS1	GALNT10-AS1	SAP30L antisense RNA 1 (head to head)	ncRNA
190667	chr5	181258271	181258430	+	0	NA	TTS (NR_109909)	TTS (NR_109909)	2793	NM_001346048	84851		NM_032765	ENSG00000183718	TRIM52	RNF102	tripartite motif containing 52	protein-coding
187624	chr5	142981601	142982380	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-113080	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
52094	chr12	54114801	54115000	+	0	NA	intron (NR_026655, intron 1 of 1)	intron (NR_026655, intron 1 of 1)	-11171	NR_026656	400043		NR_026656	ENSG00000250742	LINC02381	HMS|lncEPAT	long intergenic non-protein coding RNA 2381	ncRNA
129193	chr2	68196021	68197130	+	0	NA	intron (NM_000945, intron 2 of 5)	intron (NM_000945, intron 2 of 5)	38687	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
231728	chr9	131799071	131799430	+	0	NA	Intergenic	Intergenic	-59174	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
31642	chr10	97395051	97395580	+	0	NA	intron (NM_015179, intron 3 of 33)	AluSx|SINE|Alu	6025	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
219741	chr8	81070821	81072500	+	0	NA	intron (NM_018440, intron 1 of 8)	L2c|LINE|L2	40408	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
23148	chr1	226720471	226720630	+	0	NA	intron (NM_002221, intron 2 of 7)	MIRb|SINE|MIR	18625	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
232654	chr9	136481521	136481780	+	0	NA	intron (NM_014866, intron 1 of 31)	intron (NM_014866, intron 1 of 31)	-1360	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
184076	chr5	93579951	93580500	+	0	NA	intron (NR_109818, intron 1 of 6)	CpG	1095	NR_109824	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
106043	chr18	8745701	8745900	+	0	NA	intron (NM_015210, intron 4 of 16)	L1MB3|LINE|L1	28419	NM_015210	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
154147	chr22	31271571	31272000	+	0	NA	intron (NM_005569, intron 12 of 15)	L3|LINE|CR1	20703	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
130986	chr2	87704301	87704900	+	0	NA	non-coding (NR_160651, exon 2 of 15)	non-coding (NR_160651, exon 2 of 15)	3617	NR_160651	730268		NR_160651	ENSG00000234231	ANAPC1P4	-	ANAPC1 pseudogene 4	pseudo
161101	chr3	38167471	38167700	+	0	NA	intron (NM_005109, intron 1 of 17)	intron (NM_005109, intron 1 of 17)	2048	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
173182	chr4	6750871	6751030	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-31777	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
206324	chr7	30294721	30295350	+	0	NA	intron (NM_147128, intron 1 of 4)	(AG)n|Simple_repeat|Simple_repeat	-5145	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
229943	chr9	126665351	126665730	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	51612	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
214917	chr7	151481871	151482230	+	0	NA	intron (NM_005614, intron 3 of 7)	intron (NM_005614, intron 3 of 7)	37845	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
218057	chr8	38898671	38899130	+	0	NA	Intergenic	AluJr|SINE|Alu	-2446	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
98824	chr17	48410621	48411350	+	0	NA	intron (NM_001075099, intron 1 of 12)	L1MC3|LINE|L1	19229	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
160519	chr3	30644701	30645630	+	0	NA	intron (NM_001024847, intron 3 of 7)	intron (NM_001024847, intron 3 of 7)	38564	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
221978	chr8	129990601	129991000	+	0	NA	intron (NM_001353269, intron 1 of 10)	AluJr|SINE|Alu	17653	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
233537	chrX	228921	229380	+	0	NA	Intergenic	Intergenic	-47206	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228337	chr9	98848521	98848880	+	0	NA	intron (NM_024642, intron 9 of 9)	Tigger16a|DNA|TcMar-Tigger	41030	NM_024642	79695		NM_024642	ENSG00000119514	GALNT12	CRCS1|GalNAc-T12	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding
22187	chr1	212320621	212321280	+	0	NA	intron (NM_001199756, intron 1 of 12)	SVA_D|Retroposon|SVA	19092	NM_001199756	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
103539	chr17	78651451	78652150	+	0	NA	Intergenic	L1M5|LINE|L1	-19743	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
121010	chr19	45783521	45783850	+	0	NA	3' UTR (NM_004943, exon 5 of 5)	3' UTR (NM_004943, exon 5 of 5)	-1195	NM_001081560	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
49727	chr12	31327551	31328550	+	0	NA	Intergenic	AluSx|SINE|Alu	-1863	NM_001135811	58516		NM_021238	ENSG00000139146	SINHCAF	C12orf14|FAM60A|L4|TERA	SIN3-HDAC complex associated factor	protein-coding
60529	chr13	41449801	41450000	+	0	NA	Intergenic	SATR2|Satellite|Satellite	7336	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
169992	chr3	179650551	179650650	+	0	NA	Intergenic	Intergenic	-2440	NM_003940	8975		NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13	protein-coding
108628	chr18	76401621	76401930	+	0	NA	intron (NM_014643, intron 3 of 6)	CpG	-89877	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
101425	chr17	67401971	67403230	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	25319	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
232753	chr9	136662201	136663150	+	0	NA	promoter-TSS (NR_045111)	promoter-TSS (NR_045111)	-241	NR_045111	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
111702	chr19	4298401	4299180	+	0	NA	intron (NM_144615, intron 1 of 4)	MIRb|SINE|MIR	3641	NM_144615	126259		NM_144615	ENSG00000167664	TMIGD2	CD28H|IGPR-1|IGPR1	transmembrane and immunoglobulin domain containing 2	protein-coding
36550	chr11	6614251	6615030	+	0	NA	exon (NM_000391, exon 13 of 13)	exon (NM_000391, exon 13 of 13)	-2424	NM_006284	6881		NM_006284	ENSG00000166337	TAF10	TAF2A|TAF2H|TAFII30	TATA-box binding protein associated factor 10	protein-coding
187723	chr5	143409801	143410400	+	0	NA	intron (NM_001018075, intron 1 of 8)	intron (NM_001018075, intron 1 of 8)	-4745	NM_001364180	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
212582	chr7	128940051	128940150	+	0	NA	promoter-TSS (NM_001098627)	promoter-TSS (NM_001098627)	-570	NM_001098627	3663		NM_032643	ENSG00000128604	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
128080	chr2	47886251	47886350	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluSg|SINE|Alu	2419	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
9728	chr1	53183451	53184150	+	0	NA	Intergenic	L2a|LINE|L2	-13024	NM_001330589	1376		NM_000098	ENSG00000157184	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
175822	chr4	77877271	77877650	+	0	NA	intron (NM_020236, intron 2 of 8)	L1MCc|LINE|L1	14630	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
127506	chr2	42290501	42290730	+	0	NA	intron (NM_019063, intron 11 of 22)	AluJr|SINE|Alu	69423	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
158879	chr3	9888551	9888950	+	0	NA	Intergenic	AluJr|SINE|Alu	-1860	NM_032492	84522		NM_032492	ENSG00000171135	JAGN1	GL009|SCN6	jagunal homolog 1	protein-coding
69105	chr14	92442171	92442930	+	0	NA	intron (NM_153647, intron 6 of 17)	intron (NM_153647, intron 6 of 17)	-71231	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
80257	chr16	2218871	2219230	+	0	NA	Intergenic	AluSg|SINE|Alu	-4210	NM_001042371	283871		NM_001042371	ENSG00000184207	PGP	AUM|G3PP|PGPase	phosphoglycolate phosphatase	protein-coding
59953	chr13	31742121	31742430	+	0	NA	intron (NM_001166058, intron 1 of 16)	intron (NM_001166058, intron 1 of 16)	2733	NM_001166058	122042		NM_130806	ENSG00000133105	RXFP2	GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2	relaxin family peptide receptor 2	protein-coding
221034	chr8	116706171	116706700	+	0	NA	intron (NM_003756, intron 2 of 7)	L2b|LINE|L2	49388	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
44050	chr11	95201671	95201830	+	0	NA	intron (NM_001271594, intron 1 of 8)	intron (NM_001271594, intron 1 of 8)	-28436	NR_110295	100129203		NR_110295	ENSG00000245552	LOC100129203	-	uncharacterized LOC100129203	ncRNA
162515	chr3	48587751	48587850	+	0	NA	exon (NM_000094, exon 22 of 119)	exon (NM_000094, exon 22 of 119)	7529	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
176403	chr4	88940521	88940850	+	0	NA	intron (NM_014883, intron 4 of 23)	MLT1E1A-int|LTR|ERVL-MaLR	116500	NM_014883	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
133663	chr2	127063471	127063630	+	0	NA	intron (NM_139345, intron 9 of 15)	intron (NM_139345, intron 9 of 15)	18515	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
168137	chr3	138941051	138941750	+	0	NA	intron (NR_121649, intron 2 of 2)	intron (NR_121649, intron 2 of 2)	2620	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
127887	chr2	46174521	46174830	+	0	NA	intron (NM_005400, intron 14 of 14)	intron (NM_005400, intron 14 of 14)	-122732	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
51702	chr12	53188221	53188480	+	0	NA	3' UTR (NM_001004304, exon 7 of 7)	3' UTR (NM_001004304, exon 7 of 7)	-7425	NM_001244705	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
88091	chr16	81514971	81515130	+	0	NA	intron (NM_030629, intron 1 of 20)	MIRb|SINE|MIR	-18852	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
211354	chr7	104956201	104956400	+	0	NA	Intergenic	Intergenic	-29655	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
221301	chr8	123022301	123022780	+	0	NA	intron (NM_001363963, intron 4 of 6)	intron (NM_001363963, intron 4 of 6)	3232	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
157523	chr22	45372721	45372800	+	0	NA	intron (NM_148674, intron 12 of 24)	AluY|SINE|Alu	40839	NM_148674	27127		NM_148674	ENSG00000077935	SMC1B	SMC1BETA|SMC1L2	structural maintenance of chromosomes 1B	protein-coding
32809	chr10	109914751	109915850	+	0	NA	intron (NM_020383, intron 1 of 20)	intron (NM_020383, intron 1 of 20)	7946	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
56039	chr12	110447351	110447650	+	0	NA	intron (NM_001287222, intron 1 of 6)	AluSc|SINE|Alu	2837	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
68631	chr14	89722251	89722750	+	0	NA	Intergenic	AluSx|SINE|Alu	-103335	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
34637	chr10	133314871	133315230	+	0	NA	Intergenic	Intergenic	-2713	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
49915	chr12	39617851	39618530	+	0	NA	intron (NM_005164, intron 1 of 9)	intron (NM_005164, intron 1 of 9)	1613	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
75005	chr15	63998201	63998600	+	0	NA	intron (NM_001385000, intron 2 of 11)	intron (NM_001385000, intron 2 of 11)	48085	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
69498	chr14	95523901	95524630	+	0	NA	Intergenic	Intergenic	-7615	NM_001384284	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
180041	chr5	1067051	1067550	+	0	NA	intron (NM_006598, intron 17 of 23).2	intron (NM_006598, intron 17 of 23).2	-4326	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
84545	chr16	30556371	30556530	+	0	NA	intron (NM_033410, intron 2 of 2)	intron (NM_033410, intron 2 of 2)	1924	NM_033410	92595		NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
217850	chr8	37764371	37764530	+	0	NA	intron (NM_007198, intron 1 of 7)	AluSx1|SINE|Alu	1805	NM_007198	11212		NM_007198	ENSG00000147471	PLPBP	EPEO1|EPVB6D|PROSC	pyridoxal phosphate binding protein	protein-coding
63778	chr14	21262501	21262930	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	6727	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
112048	chr19	5137451	5138100	+	0	NA	intron (NM_015015, intron 17 of 22)	intron (NM_015015, intron 17 of 22)	168662	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
26402	chr10	17021751	17022050	+	0	NA	intron (NM_001081, intron 27 of 66)	L2c|LINE|L2	107911	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
116455	chr19	18062071	18062430	+	0	NA	exon (NM_001290024, exon 15 of 18)	exon (NM_001290024, exon 15 of 18)	24684	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
195401	chr6	36774701	36774900	+	0	NA	intron (NM_001376889, intron 11 of 21)	intron (NM_001376889, intron 11 of 21)	-9005	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
51348	chr12	51424401	51425580	+	0	NA	promoter-TSS (NM_001258403)	promoter-TSS (NM_001258403)	-127	NM_001258403	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
174956	chr4	49153071	49153730	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	166758	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
178016	chr4	139315601	139316200	+	0	NA	intron (NM_057175, intron 1 of 19)	L1MD2|LINE|L1	-13349	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
27655	chr10	33012501	33012700	+	0	NA	Intergenic	Intergenic	-54370	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
92000	chr17	7445401	7446400	+	0	NA	TTS (NM_001303460)	TTS (NM_001303460)	839	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
129342	chr2	68751451	68752350	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	16523	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
152170	chr22	20083301	20083930	+	0	NA	intron (NM_022720, intron 1 of 13)	intron (NM_022720, intron 1 of 13)	-2131	NR_037412	100500860		NR_037412	ENSG00000284140	MIR3618	-	microRNA 3618	ncRNA
40950	chr11	65329501	65330550	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-3827	NM_006268	5977		NM_006268	ENSG00000133884	DPF2	CSS7|REQ|SMARCG2|UBID4|ubi-d4	double PHD fingers 2	protein-coding
33064	chr10	110879071	110879700	+	0	NA	intron (NM_145341, intron 3 of 12)	AluY|SINE|Alu	7457	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
133764	chr2	127639771	127640730	+	0	NA	intron (NM_001136037, intron 9 of 10)	intron (NM_001136037, intron 9 of 10)	-5614	NM_001161415	2840		NM_005291	ENSG00000144230	GPR17	-	G protein-coupled receptor 17	protein-coding
209677	chr7	80134451	80135200	+	0	NA	promoter-TSS (NM_001256414)	promoter-TSS (NM_001256414)	-6	NM_002069	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
139679	chr2	227164821	227165130	+	0	NA	promoter-TSS (NM_000092)	promoter-TSS (NM_000092)	351	NM_000091	1285		NM_000091	ENSG00000169031	COL4A3	ATS2|ATS3|ATS3A|ATS3B|BFH2	collagen type IV alpha 3 chain	protein-coding
106349	chr18	13139821	13140880	+	0	NA	Intergenic	Intergenic	-77332	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207479	chr7	44633271	44634230	+	0	NA	intron (NM_001363523, intron 2 of 23)	intron (NM_001363523, intron 2 of 23)	27123	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
216271	chr8	12487851	12488230	+	0	NA	intron (NR_040092, intron 4 of 5)	HERVE-int|LTR|ERV1	51027	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
236347	chrX	70134971	70135130	+	0	NA	intron (NM_001370194, intron 2 of 3)	intron (NM_001370194, intron 2 of 3)	1115	NM_001370194	3476		NM_001551	ENSG00000089289	IGBP1	ALPHA-4|IBP1|MRXS28|alpha4	immunoglobulin binding protein 1	protein-coding
191130	chr6	4065201	4065730	+	0	NA	TTS (NR_146784)	TTS (NR_146784)	13672	NM_173563	222826		NM_173563	ENSG00000145975	FAM217A	C6orf146	family with sequence similarity 217 member A	protein-coding
137477	chr2	197116121	197116780	+	0	NA	intron (NM_153697, intron 8 of 9)	intron (NM_153697, intron 8 of 9)	-81541	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
37973	chr11	34898901	34899100	+	0	NA	intron (NM_015957, intron 1 of 6)	AluYk2|SINE|Alu	-17130	NM_001166158	8050		NM_003477	ENSG00000110435	PDHX	DLDBP|E3BP|OPDX|PDHXD|PDX1|proX	pyruvate dehydrogenase complex component X	protein-coding
121237	chr19	46651401	46651800	+	0	NA	intron (NM_001301046, intron 3 of 3)	intron (NM_001301046, intron 3 of 3)	3118	NM_001301046	147906		NM_145056	ENSG00000197380	DACT3	DAPPER3|RRR1	dishevelled binding antagonist of beta catenin 3	protein-coding
174606	chr4	40267801	40268000	+	0	NA	Intergenic	UCON105|Unknown|Unknown	-39285	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
220298	chr8	98115221	98115630	+	0	NA	intron (NM_005836, intron 1 of 5)	MIRb|SINE|MIR	1746	NM_005836	10247		NM_005836	ENSG00000132541	RIDA	HRSP12|P14.5|PSP|UK114|hp14.5	reactive intermediate imine deaminase A homolog	protein-coding
30145	chr10	74119001	74119200	+	0	NA	3' UTR (NM_003373, exon 21 of 21)	3' UTR (NM_003373, exon 21 of 21)	31728	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
171086	chr3	195486551	195486650	+	0	NA	Intergenic	Intergenic	-43580	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
24325	chr1	237737621	237737880	+	0	NA	intron (NM_001035, intron 79 of 104)	intron (NM_001035, intron 79 of 104)	-124425	NR_027247	100130331		NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
24473	chr1	244054401	244055180	+	0	NA	exon (NM_006352, exon 1 of 1)	exon (NM_006352, exon 1 of 1)	1585	NM_006352	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
96406	chr17	40152021	40152280	+	0	NA	intron (NM_007359, intron 3 of 13)	L1MA9|LINE|L1	-9783	NR_106926	102466986		NR_106926	ENSG00000284144	MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
142171	chr20	2850551	2851180	+	0	NA	intron (NM_022575, intron 1 of 23)	AluJb|SINE|Alu	-9714	NM_001271168	64773		NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
63941	chr14	22070271	22070720	+	0	NA	Intergenic	Intergenic	362258	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
72746	chr15	39583451	39583950	+	0	NA	intron (NM_003246, intron 4 of 21)	intron (NM_003246, intron 4 of 21)	2621	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
236223	chrX	65706201	65707330	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	39111	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
223612	chr8	144315921	144316600	+	0	NA	TTS (NR_106907)	TTS (NR_106907)	1055	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
97203	chr17	42706451	42707350	+	0	NA	intron (NM_001321082, intron 14 of 19)	intron (NM_001321082, intron 14 of 19)	1251	NR_106838	102466195		NR_106838	ENSG00000275273	MIR6780A	hsa-mir-6780a	microRNA 6780a	ncRNA
52102	chr12	54152621	54152880	+	0	NA	Intergenic	Intergenic	26679	NR_026656	400043		NR_026656	ENSG00000250742	LINC02381	HMS|lncEPAT	long intergenic non-protein coding RNA 2381	ncRNA
108386	chr18	69755951	69756450	+	0	NA	intron (NM_152721, intron 6 of 7)	MER61D|LTR|ERV1	191673	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
172659	chr4	2652401	2653130	+	0	NA	intron (NM_001256668, intron 5 of 19)	intron (NM_001256668, intron 5 of 19)	27333	NM_001256668	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
155563	chr22	38729101	38729680	+	0	NA	intron (NM_004286, intron 10 of 11)	intron (NM_004286, intron 10 of 11)	23446	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
227354	chr9	89474851	89474950	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	4990	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
217301	chr8	27381371	27381530	+	0	NA	intron (NM_173174, intron 6 of 35)	L1MA5|LINE|L1	-51920	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
51506	chr12	52150871	52151030	+	0	NA	Intergenic	Intergenic	41064	NM_001081492	144501		NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
69733	chr14	98580221	98580600	+	0	NA	Intergenic	Intergenic	-131203	NR_161367	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
120939	chr19	45675621	45676080	+	0	NA	promoter-TSS (NR_037512)	promoter-TSS (NR_037512)	-842	NR_037512	100500845		NR_037512	ENSG00000283212	MIR642B	mir-642b	microRNA 642b	ncRNA
217034	chr8	23248951	23249250	+	0	NA	intron (NM_001363183, intron 1 of 8)	MIRb|SINE|MIR	2459	NM_001317899	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
169274	chr3	158094171	158095450	+	0	NA	Intergenic	CpG	11353	NM_006884	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
20462	chr1	198597621	198598130	+	0	NA	Intergenic	Intergenic	-41093	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
6613	chr1	28880801	28881380	+	0	NA	Intergenic	AluSx|SINE|Alu	-6001	NM_203342	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
111887	chr19	4664651	4665150	+	0	NA	exon (NM_019107, exon 3 of 6)	exon (NM_019107, exon 3 of 6)	5442	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
19239	chr1	172643171	172644280	+	0	NA	Intergenic	Intergenic	-15283	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
35708	chr11	1935471	1936180	+	0	NA	intron (NM_001363561, intron 15 of 16)	intron (NM_001363561, intron 15 of 16)	-11507	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
221850	chr8	128273171	128273330	+	0	NA	Intergenic	L2a|LINE|L2	123134	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
172909	chr4	3493501	3493700	+	0	NA	3' UTR (NM_001164673, exon 7 of 7)	3' UTR (NM_001164673, exon 7 of 7)	9056	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
101316	chr17	66567051	66567480	+	0	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-150411	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
193260	chr6	29955151	29955830	+	0	NA	Intergenic	Intergenic	12958	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
123167	chr19	52225801	52226000	+	0	NA	intron (NR_033500, intron 13 of 13)	intron (NR_033500, intron 13 of 13)	3880	NR_106859	102466984		NR_106859	ENSG00000274380	MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
199988	chr6	127999001	127999400	+	0	NA	TTS (NM_001291983)	TTS (NM_001291983)	-28665	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
118817	chr19	38551401	38552130	+	0	NA	intron (NM_000540, intron 89 of 105)	L2|LINE|L2	-44582	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
158897	chr3	9932151	9933200	+	0	NA	exon (NM_001367280, exon 16 of 17)	exon (NM_001367280, exon 16 of 17)	-1159	NM_001374319	78987		NM_015513	ENSG00000163703	CRELD1	AVSD2|CIRRIN|JELANS	cysteine rich with EGF like domains 1	protein-coding
19988	chr1	185043701	185044080	+	0	NA	Intergenic	AluSz|SINE|Alu	-1668	NM_007212	6045		NM_007212	ENSG00000121481	RNF2	BAP-1|BAP1|DING|HIPI3|LUSYAM|RING1B|RING2	ring finger protein 2	protein-coding
73317	chr15	41897821	41898280	+	0	NA	3' UTR (NM_139265, exon 6 of 6)	3' UTR (NM_139265, exon 6 of 6)	-3997	NM_016642	51332		NM_016642	ENSG00000137877	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin beta, non-erythrocytic 5	protein-coding
204715	chr7	5541471	5542250	+	0	NA	Intergenic	Intergenic	-11259	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
220032	chr8	91048951	91049050	+	0	NA	Intergenic	AluSx3|SINE|Alu	-8141	NM_018710	55529		NM_018710	ENSG00000155099	PIP4P2	TMEM55A	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2	protein-coding
158436	chr22	50600151	50601050	+	0	NA	promoter-TSS (NM_012324)	promoter-TSS (NM_012324)	-193	NM_012324	23542		NM_012324	ENSG00000008735	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
34720	chr10	133608821	133609130	+	0	NA	Intergenic	HERVK14C-int|LTR|ERVK	17820	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
72054	chr15	28833301	28833500	+	0	NA	intron (NR_037599, intron 11 of 13)	intron (NR_037599, intron 11 of 13)	15285	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
38186	chr11	36364751	36365050	+	0	NA	intron (NM_001160167, intron 1 of 8)	(CTCC)n|Simple_repeat|Simple_repeat	-11085	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
134685	chr2	144480401	144480600	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-39114	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
131005	chr2	87819601	87820280	+	0	NA	intron (NM_001024457, intron 1 of 22).2	AluSz6|SINE|Alu	5827	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
74878	chr15	63580851	63581150	+	0	NA	intron (NR_046342, intron 12 of 15)	AluSz|SINE|Alu	-16387	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
37062	chr11	12331051	12331500	+	0	NA	intron (NM_032867, intron 6 of 8)	intron (NM_032867, intron 6 of 8)	44375	NM_032867	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
1692	chr1	4654421	4654880	+	0	NA	promoter-TSS (NM_001042478)	promoter-TSS (NM_001042478)	41	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
6786	chr1	30765921	30766580	+	0	NA	Intergenic	Intergenic	-8476	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
90466	chr17	1384971	1385550	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	14962	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
196126	chr6	42396501	42396930	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	55336	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
154072	chr22	30740721	30740980	+	0	NA	intron (NM_030758, intron 1 of 13)	intron (NM_030758, intron 1 of 13)	9293	NR_036171	100422912		NR_036171	ENSG00000264661	MIR3200	mir-3200	microRNA 3200	ncRNA
189207	chr5	171433901	171434300	+	0	NA	intron (NM_003862, intron 2 of 4)	MIR|SINE|MIR	14453	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
210352	chr7	99562201	99562550	+	0	NA	exon (NM_001085367, exon 4 of 5)	exon (NM_001085367, exon 4 of 5)	3541	NM_001363334	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
74171	chr15	55318351	55319950	+	0	NA	promoter-TSS (NM_001308423)	promoter-TSS (NM_001308423)	-27	NM_001308421	101928527		NM_001308421	ENSG00000225973	PIGBOS1	HP06981	PIGB opposite strand 1	protein-coding
71146	chr14	105005871	105006230	+	0	NA	Intergenic	Intergenic	15033	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
160471	chr3	30496571	30496930	+	0	NA	Intergenic	Intergenic	-22118	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
134418	chr2	143083501	143084430	+	0	NA	Intergenic	Intergenic	-45454	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
72542	chr15	34335271	34335700	+	0	NA	intron (NM_133647, intron 1 of 24)	intron (NM_133647, intron 1 of 24)	1359	NM_133647	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
35342	chr11	1152371	1152830	+	0	NA	Intergenic	Intergenic	-5353	NM_001304359	4586		NM_017511	ENSG00000215182	MUC5AC	MUC5|TBM|leB|mucin	mucin 5AC, oligomeric mucus/gel-forming	protein-coding
236431	chrX	71365841	71367500	+	0	NA	intron (NR_104387, intron 1 of 39)	CpG	313	NR_104388	6872		NM_004606	ENSG00000147133	TAF1	BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|MRXS33|N-TAF1|NSCL2|OF|P250|TAF(II)250|TAF2A|TAFII-250|TAFII250|XDP	TATA-box binding protein associated factor 1	protein-coding
50354	chr12	47193021	47193500	+	0	NA	intron (NM_001281429, intron 2 of 2)	MIR|SINE|MIR	5448	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
117237	chr19	19428601	19428850	+	0	NA	intron (NM_001384517, intron 2 of 12)	intron (NM_001384517, intron 2 of 12)	-6338	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
91249	chr17	3959701	3960680	+	0	NA	intron (NM_174953, intron 1 of 22)	intron (NM_174953, intron 1 of 22)	4247	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
95241	chr17	35371201	35371400	+	0	NA	intron (NM_001376008, intron 1 of 6)	L1MA1|LINE|L1	2321	NM_001376010	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
146932	chr20	51773401	51773800	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-5210	NM_006045	10079		NM_006045	ENSG00000054793	ATP9A	ATPIIA|NEDGBA	ATPase phospholipid transporting 9A (putative)	protein-coding
55648	chr12	107287601	107288130	+	0	NA	Intergenic	L2a|LINE|L2	-30569	NM_001347943	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
49630	chr12	28194951	28195250	+	0	NA	intron (NM_001352087, intron 1 of 10)	LTR12D|LTR|ERV1	-4362	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
148738	chr21	7430501	7430700	+	0	NA	promoter-TSS (NM_001322036)	promoter-TSS (NM_001322036)	-37	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
209699	chr7	83976321	83976580	+	0	NA	intron (NM_006080, intron 15 of 16)	intron (NM_006080, intron 15 of 16)	218339	NM_006080	10371		NM_006080	ENSG00000075213	SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	semaphorin 3A	protein-coding
139697	chr2	227467101	227467680	+	0	NA	Intergenic	Intergenic	-4742	NR_049888	100847081		NR_049888	ENSG00000284092	MIR5703	mir-5703	microRNA 5703	ncRNA
4069	chr1	19067771	19068030	+	0	NA	Intergenic	Intergenic	-111224	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
208216	chr7	65230321	65230580	+	0	NA	intron (NR_146906, intron 15 of 17)	AluSz6|SINE|Alu	89420	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
84458	chr16	30443251	30443780	+	0	NA	TTS (NM_012248)	TTS (NM_012248)	2359	NM_012248	22928		NM_012248	ENSG00000179918	SEPHS2	SPS2	selenophosphate synthetase 2	protein-coding
181921	chr5	54832971	54833330	+	0	NA	Intergenic	Intergenic	-88892	NR_104658	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
166643	chr3	119703951	119704050	+	0	NA	intron (NM_001320316, intron 1 of 17)	intron (NM_001320316, intron 1 of 17)	978	NM_001320316	89876		NM_033364	ENSG00000183833	CFAP91	AAT1|AAT1alpha|C3orf15|CaM-IP2|MAATS1|SPATA26|SPGF51	cilia and flagella associated protein 91	protein-coding
3446	chr1	15905471	15905630	+	0	NA	intron (NM_015001, intron 3 of 14)	intron (NM_015001, intron 3 of 14)	-57403	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
99684	chr17	50760221	50760880	+	0	NA	TTS (NM_001358683)	TTS (NM_001358683)	6968	NM_001358683	55018		NM_017928	ENSG00000167117	ANKRD40CL	C17orf73|LINC00483	ANKRD40 C-terminal like	protein-coding
12573	chr1	108746341	108747480	+	0	NA	intron (NM_007269, intron 1 of 18)	CpG	236	NM_007269	6814		NM_007269	ENSG00000116266	STXBP3	MUNC18-3|MUNC18C|PSP|UNC-18C	syntaxin binding protein 3	protein-coding
199549	chr6	118844851	118845350	+	0	NA	intron (NR_165493, intron 7 of 11)	intron (NR_165493, intron 7 of 11)	-49052	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
39057	chr11	47950001	47951600	+	0	NA	Intergenic	Intergenic	-29759	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
207497	chr7	44750901	44751880	+	0	NA	intron (NM_031449, intron 1 of 18)	MER5A|DNA|hAT-Charlie	2543	NM_031449	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
120751	chr19	45403701	45404500	+	0	NA	intron (NM_001142502, intron 1 of 12)	intron (NM_001142502, intron 1 of 12)	969	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
137499	chr2	197153851	197153950	+	0	NA	intron (NM_153697, intron 2 of 9)	GA-rich|Low_complexity|Low_complexity	-44091	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
110704	chr19	2299001	2299830	+	0	NA	intron (NM_001101391, intron 1 of 1)	AluY|SINE|Alu	8739	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
2796	chr1	10916871	10917030	+	0	NA	Intergenic	Intergenic	49737	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
201286	chr6	144304251	144305000	+	0	NA	intron (NM_007124, intron 1 of 73)	L2c|LINE|L2	12888	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
185664	chr5	131605821	131606480	+	0	NA	intron (NM_016340, intron 1 of 27)	AluJb|SINE|Alu	29079	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
15215	chr1	149412901	149413300	+	0	NA	intron (NM_001364013, intron 1 of 4)	AluSz|SINE|Alu	22462	NM_001364013	100996717		NM_001364012	ENSG00000286219	NOTCH2NLC	ETM6|N2N|NIID|NOTCH2NL|NOTCH2NLA|OPDM3	notch 2 N-terminal like C	protein-coding
226692	chr9	75102671	75103030	+	0	NA	intron (NM_012383, intron 1 of 9)	intron (NM_012383, intron 1 of 9)	14336	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
202442	chr6	158002821	158003630	+	0	NA	TTS (NR_046796)	TTS (NR_046796)	2118	NR_046796	100874300		NR_046796	ENSG00000233496	SYNJ2-IT1	-	SYNJ2 intronic transcript 1	ncRNA
166744	chr3	122022001	122022300	+	0	NA	promoter-TSS (NM_001199800)	promoter-TSS (NM_001199800)	97	NM_001199799	286676		NM_175924	ENSG00000145103	ILDR1	DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta	immunoglobulin like domain containing receptor 1	protein-coding
170655	chr3	187150301	187150840	+	0	NA	Intergenic	L1PB1|LINE|L1	-11074	NM_052969	116832		NM_052969	ENSG00000163923	RPL39L	L39-2|RPL39L1	ribosomal protein L39 like	protein-coding
217978	chr8	38362721	38364150	+	0	NA	intron (NM_017778, intron 1 of 9)	AluSz|SINE|Alu	18836	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
228441	chr9	99831871	99832030	+	0	NA	intron (NM_173200, intron 4 of 8)	intron (NM_173200, intron 4 of 8)	10065	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
50633	chr12	48711671	48711900	+	0	NA	intron (NM_001240, intron 2 of 8)	intron (NM_001240, intron 2 of 8)	4922	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
168028	chr3	136897101	136897480	+	0	NA	intron (NM_001291999, intron 1 of 3)	AluSz6|SINE|Alu	-33212	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
21787	chr1	206946721	206946980	+	0	NA	promoter-TSS (NM_002644)	promoter-TSS (NM_002644)	-384	NM_002644	5284		NM_002644	ENSG00000162896	PIGR	-	polymeric immunoglobulin receptor	protein-coding
207511	chr7	44795801	44797000	+	0	NA	promoter-TSS (NM_001300981)	promoter-TSS (NM_001300981)	-281	NM_001300981	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
157090	chr22	42623871	42624430	+	0	NA	intron (NM_001129819, intron 7 of 8)	intron (NM_001129819, intron 7 of 8)	8905	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
117010	chr19	18908751	18908850	+	0	NA	intron (NM_007263, intron 3 of 9)	AluY|SINE|Alu	10587	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
57077	chr12	121021771	121021930	+	0	NA	intron (NM_001261825, intron 3 of 3)	intron (NM_001261825, intron 3 of 3)	-5363	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
60370	chr13	40929021	40930980	+	0	NA	Intergenic	AluJb|SINE|Alu	-8226	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
3512	chr1	16051301	16051700	+	0	NA	exon (NM_001165945, exon 6 of 13)	exon (NM_001165945, exon 6 of 13)	2738	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
167154	chr3	128056251	128056550	+	0	NA	intron (NM_013336, intron 4 of 11)	intron (NM_013336, intron 4 of 11)	3963	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
110953	chr19	2898171	2898550	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2568	NM_173480	126295		NM_173480	ENSG00000171970	ZNF57	ZNF424	zinc finger protein 57	protein-coding
122935	chr19	50694021	50694280	+	0	NA	intron (NM_016148, intron 15 of 23)	intron (NM_016148, intron 15 of 23)	25652	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
207836	chr7	50337041	50337800	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	18372	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
170905	chr3	194058151	194058450	+	0	NA	intron (NR_136181, intron 1 of 3)	intron (NR_136181, intron 1 of 3)	11229	NR_136181	285389		NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
68339	chr14	77605521	77605780	+	0	NA	intron (NM_004863, intron 1 of 11)	L1MEg2|LINE|L1	10987	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
135842	chr2	170770201	170771410	+	0	NA	promoter-TSS (NR_110185)	promoter-TSS (NR_110185)	-39	NR_110185	101926913		NR_110185	ENSG00000234350	ERICH2-DT	-	ERICH2 divergent transcript	ncRNA
177862	chr4	128286221	128286890	+	0	NA	intron (NM_006320, intron 1 of 2)	intron (NM_006320, intron 1 of 2)	1258	NM_006320	10424		NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
185763	chr5	132272001	132272200	+	0	NA	exon (NM_003687, exon 7 of 7)	exon (NM_003687, exon 7 of 7)	14404	NM_003687	8572		NM_003687	ENSG00000131435	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
111506	chr19	3984601	3985900	+	0	NA	intron (NM_001961, intron 1 of 14)	CpG	213	NM_001961	1938		NM_001961	ENSG00000167658	EEF2	EEF-2|EF-2|EF2|SCA26	eukaryotic translation elongation factor 2	protein-coding
104181	chr17	80424171	80424950	+	0	NA	intron (NM_001164638, intron 4 of 7)	intron (NM_001164638, intron 4 of 7)	5142	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
56487	chr12	116243751	116244730	+	0	NA	intron (NM_015335, intron 1 of 30)	intron (NM_015335, intron 1 of 30)	33453	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
223809	chr8	144798401	144799630	+	0	NA	5' UTR (NM_001384904, exon 1 of 5)	5' UTR (NM_001384904, exon 1 of 5)	102	NM_213605	340385		NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
110603	chr19	2180601	2180800	+	0	NA	intron (NM_032482, intron 1 of 27)	intron (NM_032482, intron 1 of 27)	16767	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
164446	chr3	59449801	59450500	+	0	NA	Intergenic	MIRb|SINE|MIR	208347	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
79993	chr16	1824601	1824800	+	0	NA	intron (NM_001286249, intron 1 of 7)	intron (NM_001286249, intron 1 of 7)	2125	NM_005326	3029		NM_005326	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
147091	chr20	53846201	53846550	+	0	NA	Intergenic	L1MC1|LINE|L1	29334	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
212786	chr7	130084101	130084380	+	0	NA	intron (NM_014997, intron 1 of 9)	L2|LINE|L2	13706	NM_014997	23008		NM_014997	ENSG00000128607	KLHDC10	PNAS-138|slim	kelch domain containing 10	protein-coding
79822	chr16	1423821	1424430	+	0	NA	Intergenic	AluSp|SINE|Alu	-3378	NM_001272051	283951		NM_001010878	ENSG00000174109	UQCC4	C16orf91|CCSMST1|URLC5|gs103	ubiquinol-cytochrome c reductase complex assembly factor 4	protein-coding
127702	chr2	43222971	43223130	+	0	NA	3' UTR (NM_006887, exon 2 of 2)	3' UTR (NM_006887, exon 2 of 2)	3556	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
153455	chr22	25235751	25236100	+	0	NA	Intergenic	Intergenic	16286	NM_000496	1415		NM_000496	ENSG00000244752	CRYBB2	CCA2|CRYB2|CRYB2A|CTRCT3|D22S665	crystallin beta B2	protein-coding
100189	chr17	58692071	58693080	+	0	NA	promoter-TSS (NR_103872)	promoter-TSS (NR_103872)	2	NR_103873	5889		NM_002876	ENSG00000108384	RAD51C	BROVCA3|FANCO|R51H3|RAD51L2	RAD51 paralog C	protein-coding
54166	chr12	76763551	76765430	+	0	NA	intron (NM_015336, intron 1 of 16)	CpG	232	NM_001359626	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
214610	chr7	150713751	150713850	+	0	NA	Intergenic	L1PA8|LINE|L1	-2757	NM_001199577	100527949		NM_001199577	ENSG00000281887	GIMAP1-GIMAP5	-	GIMAP1-GIMAP5 readthrough	protein-coding
230187	chr9	127796501	127796700	+	0	NA	Intergenic	Intergenic	-6258	NM_001288803	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
117169	chr19	19344651	19345680	+	0	NA	intron (NM_015329, intron 11 of 18)	intron (NM_015329, intron 11 of 18)	24336	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
98978	chr17	48729871	48730300	+	0	NA	Intergenic	Intergenic	-1335	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
154196	chr22	31393871	31394330	+	0	NA	Intergenic	LTR12|LTR|ERV1	-5504	NM_004147	4733		NM_004147	ENSG00000185721	DRG1	NEDD3|TANALS	developmentally regulated GTP binding protein 1	protein-coding
114116	chr19	11140771	11141400	+	0	NA	Intergenic	Intergenic	14697	NM_001317033								
90280	chr17	1006701	1006900	+	0	NA	intron (NM_001282149, intron 17 of 17).3	CpG	9671	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
228712	chr9	109098121	109098400	+	0	NA	intron (NM_032012, intron 3 of 17)	intron (NM_032012, intron 3 of 17)	21687	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
202711	chr6	158839701	158840100	+	0	NA	Intergenic	Intergenic	17732	NR_028496	202459		NM_145303	ENSG00000293101	OSTCP1	DC2L|OSTCL	oligosaccharyltransferase complex subunit pseudogene 1	pseudo
40452	chr11	64212021	64212280	+	0	NA	intron (NM_001382363, intron 5 of 13)	L2b|LINE|L2	4444	NM_001382364	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
170532	chr3	186616751	186617580	+	0	NA	intron (NM_001622, intron 3 of 6)	intron (NM_001622, intron 3 of 6)	4105	NM_001622	197		NM_001622	ENSG00000145192	AHSG	A2HS|AHS|APMR1|FETUA|HSGA	alpha 2-HS glycoprotein	protein-coding
68137	chr14	75531971	75532130	+	0	NA	intron (NM_006399, intron 2 of 2)	MIRb|SINE|MIR	9581	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
38208	chr11	36395021	36395280	+	0	NA	intron (NM_024841, intron 2 of 9)	L1ME4b|LINE|L1	-5847	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
27526	chr10	32311201	32312000	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	35558	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
23724	chr1	232082271	232082430	+	0	NA	Intergenic	L1PA5|LINE|L1	156516	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
34131	chr10	128035551	128036200	+	0	NA	intron (NM_001323354, intron 1 of 19)	intron (NM_001323354, intron 1 of 19)	-11737	NM_130435	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
236368	chrX	70916371	70916930	+	0	NA	Intergenic	AluJb|SINE|Alu	-7939	NM_031276	56159		NM_031276	ENSG00000120498	TEX11	MZIP4|SPGFX2|Spo22|TGC1|TSGA3|ZIP4|ZIP4H	testis expressed 11	protein-coding
175478	chr4	73086251	73087050	+	0	NA	intron (NM_032217, intron 29 of 33)	AluJo|SINE|Alu	-16891	NM_001300729	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
122502	chr19	49582801	49583780	+	0	NA	exon (NM_000951, exon 2 of 7)	exon (NM_000951, exon 2 of 7)	1974	NM_001316335	5639		NM_000951	ENSG00000126460	PRRG2	PRGP2	proline rich and Gla domain 2	protein-coding
108501	chr18	74082321	74083280	+	0	NA	intron (NM_001142958, intron 8 of 9)	intron (NM_001142958, intron 8 of 9)	65034	NM_152676	201456		NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
218000	chr8	38397051	38397350	+	0	NA	intron (NM_001199660, intron 4 of 10)	AluSx1|SINE|Alu	10069	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
40234	chr11	63572601	63573100	+	0	NA	Intergenic	Intergenic	-9471	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
200566	chr6	136280151	136280750	+	0	NA	intron (NM_001301038, intron 2 of 12)	intron (NM_001301038, intron 2 of 12)	9396	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
217586	chr8	29528901	29530480	+	0	NA	Intergenic	Intergenic	-179006	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
212264	chr7	122305231	122305350	+	0	NA	promoter-TSS (NM_001160264)	promoter-TSS (NM_001160264)	-540	NM_001024613	389549		NM_001024613	ENSG00000128610	FEZF1	FEZ|HH22|ZNF312B	FEZ family zinc finger 1	protein-coding
201663	chr6	149498521	149498780	+	0	NA	Intergenic	AluJr|SINE|Alu	-13636	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
115272	chr19	14553051	14553600	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	18741	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
34838	chr11	307701	309700	+	0	NA	intron (NM_006435, intron 1 of 1)	intron (NM_006435, intron 1 of 1)	593	NM_006435	10581		NM_006435	ENSG00000185201	IFITM2	1-8D|DSPA2c	interferon induced transmembrane protein 2	protein-coding
179626	chr4	186136951	186137050	+	0	NA	intron (NM_001367768, intron 1 of 13)	(TC)n|Simple_repeat|Simple_repeat	-7287	NM_001006655	25854		NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
221782	chr8	127944571	127944730	+	0	NA	intron (NR_003367, intron 3 of 8)	intron (NR_003367, intron 3 of 8)	4073	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
138664	chr2	212958501	212959300	+	0	NA	Intergenic	Eulor8|DNA|TcMar?	-32564	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
146164	chr20	48728101	48729180	+	0	NA	intron (NM_020820, intron 4 of 39)	intron (NM_020820, intron 4 of 39)	99359	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
124759	chr2	6930751	6931050	+	0	NA	intron (NM_001349184, intron 1 of 8)	(TA)n|Simple_repeat|Simple_repeat	-2184	NM_001349182	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
63035	chr13	112944771	112945100	+	0	NA	Intergenic	Intergenic	23703	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
149189	chr21	23853871	23854100	+	0	NA	Intergenic	L2c|LINE|L2	467392	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
198151	chr6	90586221	90587750	+	0	NA	promoter-TSS (NM_003188)	promoter-TSS (NM_003188)	87	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
18927	chr1	168465901	168466700	+	0	NA	intron (NR_125956, intron 4 of 4)	intron (NR_125956, intron 4 of 4)	29344	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
112067	chr19	5170271	5170700	+	0	NA	Intergenic	L2a|LINE|L2	170327	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
98741	chr17	48039971	48040130	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2253	NM_016429	51226		NM_016429	ENSG00000005243	COPZ2	zeta2-COP	COPI coat complex subunit zeta 2	protein-coding
211211	chr7	102625601	102626580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9332	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
165375	chr3	93974771	93974930	+	0	NA	promoter-TSS (NM_000313)	promoter-TSS (NM_000313)	-954	NM_001314077	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
83660	chr16	28325321	28325780	+	0	NA	Intergenic	Intergenic	33025	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
87346	chr16	70346401	70347730	+	0	NA	promoter-TSS (NR_039997)	promoter-TSS (NR_039997)	162	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
84810	chr16	31076171	31076330	+	0	NA	5' UTR (NM_014699, exon 2 of 3)	5' UTR (NM_014699, exon 2 of 3)	1828	NM_014699	9726		NM_014699	ENSG00000167395	ZNF646	-	zinc finger protein 646	protein-coding
165840	chr3	105848071	105848230	+	0	NA	intron (NR_135807, intron 3 of 20)	intron (NR_135807, intron 3 of 20)	19441	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
123239	chr19	52992821	52994000	+	0	NA	intron (NR_003578, intron 1 of 3)	intron (NR_003578, intron 1 of 3)	121	NR_003578	79986		NM_024924	ENSG00000293317	ZNF702P	ZNF702	zinc finger protein 702, pseudogene	pseudo
97522	chr17	44000201	44000400	+	0	NA	intron (NM_004160, intron 1 of 6)	L2|LINE|L2	4145	NM_004160	5697		NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
80531	chr16	2766651	2766950	+	0	NA	exon (NM_016333, exon 11 of 15)	exon (NM_016333, exon 11 of 15)	10480	NM_207013	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
138763	chr2	215979801	215980530	+	0	NA	intron (NM_001372188, intron 2 of 5)	intron (NM_001372188, intron 2 of 5)	33386	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
58403	chr12	131906671	131907030	+	0	NA	intron (NM_003565, intron 3 of 27)	intron (NM_003565, intron 3 of 27)	12228	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
190960	chr6	2936751	2938350	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	24580	NM_001271825	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
26900	chr10	26443921	26444330	+	0	NA	intron (NM_019043, intron 2 of 14)	L2a|LINE|L2	5784	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
85066	chr16	32115451	32115550	+	0	NA	Intergenic	Intergenic	72613	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
62559	chr13	99916201	99916800	+	0	NA	intron (NR_120421, intron 1 of 4)	intron (NR_120421, intron 1 of 4)	40665	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
188842	chr5	159179001	159179430	+	0	NA	intron (NM_001199383, intron 4 of 10)	intron (NM_001199383, intron 4 of 10)	28433	NM_001199382	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
201764	chr6	149946951	149947250	+	0	NA	intron (NM_025217, intron 3 of 4)	intron (NM_025217, intron 3 of 4)	5086	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
132681	chr2	108788201	108788500	+	0	NA	intron (NR_147236, intron 2 of 14)	AluSq|SINE|Alu	1579	NR_147236	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
55426	chr12	104503151	104503600	+	0	NA	intron (NM_018413, intron 1 of 2)	MIRb|SINE|MIR	46427	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
107206	chr18	36093321	36093580	+	0	NA	Intergenic	L2a|LINE|L2	-25856	NM_001303413	55197		NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
15654	chr1	150865471	150865830	+	0	NA	intron (NM_001350224, intron 1 of 22)	HAL1|LINE|L1	10949	NM_001197325	405		NM_001668	ENSG00000143437	ARNT	ARNT1|HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2	aryl hydrocarbon receptor nuclear translocator	protein-coding
83695	chr16	28435821	28436080	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-9496	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
89414	chr16	88870551	88871400	+	0	NA	promoter-TSS (NM_001080487)	promoter-TSS (NM_001080487)	-823	NM_001294328	390748		NM_001080487	ENSG00000205022	PABPN1L	PABPNL1|ePABP2	PABPN1 like, cytoplasmic	protein-coding
218281	chr8	42292221	42293490	+	0	NA	intron (NM_001190720, intron 3 of 20)	MIRb|SINE|MIR	21553	NM_001242778	3551		NM_001556	ENSG00000104365	IKBKB	IKK-2|IKK-beta|IKK2|IKKB|IMD15|IMD15A|IMD15B|NFKBIKB	inhibitor of nuclear factor kappa B kinase subunit beta	protein-coding
10348	chr1	64926571	64927030	+	0	NA	intron (NM_001321852, intron 1 of 24)	MIR|SINE|MIR	39749	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
114733	chr19	13207021	13207400	+	0	NA	3' UTR (NM_001174080, exon 47 of 47)	3' UTR (NM_001174080, exon 47 of 47)	56799	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
66800	chr14	64720671	64720830	+	0	NA	intron (NM_001308147, intron 1 of 16)	MLT1D|LTR|ERVL-MaLR	16326	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
146505	chr20	49905671	49906350	+	0	NA	exon (NM_006038, exon 3 of 3)	exon (NM_006038, exon 3 of 3)	7729	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
225175	chr9	33860571	33860930	+	0	NA	intron (NM_017811, intron 1 of 4)	AluJr|SINE|Alu	43590	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
164479	chr3	59988721	59988980	+	0	NA	intron (NR_135491, intron 4 of 6)	L2b|LINE|L2	92059	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
82227	chr16	15029451	15029550	+	0	NA	3' UTR (NM_001285450, exon 14 of 14).2	3' UTR (NM_001285450, exon 14 of 14).2	-19103	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
237085	chrX	103831601	103832330	+	0	NA	intron (NM_016370, intron 1 of 2)	intron (NM_016370, intron 1 of 2)	292	NM_016370	51209		NM_016370	ENSG00000123570	RAB9B	RAB9L|Rab-9L	RAB9B, member RAS oncogene family	protein-coding
18715	chr1	167452201	167453750	+	0	NA	intron (NM_198053, intron 1 of 7)	(ACAT)n|Simple_repeat|Simple_repeat	65554	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
103728	chr17	78844371	78844950	+	0	NA	Intergenic	Intergenic	-3221	NM_001385176	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
209970	chr7	92793721	92793980	+	0	NA	intron (NM_001145306, intron 2 of 7)	L1MB8|LINE|L1	40109	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
88629	chr16	85625221	85625880	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	12228	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
159864	chr3	16788971	16790050	+	0	NA	Intergenic	MSTD-int|LTR|ERVL-MaLR	-95445	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
23212	chr1	227563151	227564500	+	0	NA	intron (NM_001367911, intron 1 of 2)	CpG	269	NM_001367911	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
109018	chr18	79718821	79719300	+	0	NA	intron (NM_048368, intron 10 of 11)	intron (NM_048368, intron 10 of 11)	37630	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
18674	chr1	167219701	167221550	+	0	NA	promoter-TSS (NR_037163)	promoter-TSS (NR_037163)	-260	NM_001365849	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
81550	chr16	9114071	9115200	+	0	NA	intron (NM_014117, intron 3 of 3)	intron (NM_014117, intron 3 of 3)	22991	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
113253	chr19	8503351	8503650	+	0	NA	promoter-TSS (NM_032152)	promoter-TSS (NM_032152)	-860	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
66461	chr14	61554001	61554750	+	0	NA	Intergenic	Intergenic	15819	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
194356	chr6	32949821	32950480	+	0	NA	intron (NM_006120, intron 2 of 4)	intron (NM_006120, intron 2 of 4)	2947	NM_006120	3108		NM_006120	ENSG00000204257	HLA-DMA	D6S222E|DMA|HLADM|RING6	major histocompatibility complex, class II, DM alpha	protein-coding
173205	chr4	6825071	6826030	+	0	NA	intron (NM_014743, intron 3 of 9)	AluJr|SINE|Alu	42818	NM_001100590	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
48316	chr12	9007321	9007780	+	0	NA	intron (NM_005810, intron 3 of 4)	AluSx1|SINE|Alu	17925	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
4795	chr1	23575551	23576050	+	0	NA	Intergenic	Intergenic	-16299	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
41045	chr11	65468721	65469450	+	0	NA	Intergenic	Intergenic	13799	NR_160547	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
154168	chr22	31296621	31297080	+	0	NA	Intergenic	Intergenic	-4316	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
67438	chr14	70653651	70653950	+	0	NA	intron (NM_015351, intron 1 of 2)	intron (NM_015351, intron 1 of 2)	11884	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
15333	chr1	149904801	149905180	+	0	NA	3' UTR (NM_001328674, exon 13 of 13)	3' UTR (NM_001328674, exon 13 of 13)	2001	NM_001278719	9900		NM_014849	ENSG00000159164	SV2A	DEE113|SLC22B1|SV2	synaptic vesicle glycoprotein 2A	protein-coding
102185	chr17	75151501	75152280	+	0	NA	intron (NM_001002033, intron 1 of 5)	AluSp|SINE|Alu	1403	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
42920	chr11	73393371	73394230	+	0	NA	intron (NM_152222, intron 6 of 10)	intron (NM_152222, intron 6 of 10)	17132	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
53789	chr12	68863871	68864230	+	0	NA	intron (NM_198320, intron 7 of 8)	intron (NM_198320, intron 7 of 8)	55026	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
73119	chr15	41230451	41232330	+	0	NA	promoter-TSS (NM_001286441)	promoter-TSS (NM_001286441)	122	NM_007236	11261		NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|SPAX9|Sid470p|p22|p24	calcineurin like EF-hand protein 1	protein-coding
111381	chr19	3720201	3720600	+	0	NA	intron (NM_001267560, intron 1 of 20)	L2c|LINE|L2	-1337	NM_001267561	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
93216	chr17	17830521	17831100	+	0	NA	intron (NM_001005291, intron 1 of 19)	intron (NM_001005291, intron 1 of 19)	6176	NM_001005291	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
190648	chr5	181234121	181234930	+	0	NA	exon (NM_033549, exon 6 of 6)	exon (NM_033549, exon 6 of 6)	7364	NR_002592	619571		NR_002592	ENSG00000272296	SNORD96A	U96A	small nucleolar RNA, C/D box 96A	snoRNA
10702	chr1	75265751	75266050	+	0	NA	intron (NM_152697, intron 6 of 23)	intron (NM_152697, intron 6 of 23)	131512	NM_001256114	431707		NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
236396	chrX	71118001	71119550	+	0	NA	exon (NM_005120, exon 1 of 45)	exon (NM_005120, exon 1 of 45)	179	NM_005120	9968		NM_005120	ENSG00000184634	MED12	ARC240|CAGH45|FGS1|HDKR|HOPA|Kto|MED12S|OHDOX|OKS|OPA1|TNRC11|TRAP230	mediator complex subunit 12	protein-coding
2961	chr1	11916571	11917530	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	8896	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
86642	chr16	67445901	67446300	+	0	NA	intron (NM_004691, intron 2 of 7)	intron (NM_004691, intron 2 of 7)	14979	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
217807	chr8	33590871	33591630	+	0	NA	TTS (NM_001305115)	TTS (NM_001305115)	6547	NM_001305116	78986		NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding
148390	chr20	63919501	63919700	+	0	NA	promoter-TSS (NR_040032)	promoter-TSS (NR_040032)	39	NR_040032	100126330		NR_040032	ENSG00000216195	MIR941-4	MIRN941-4	microRNA 941-4	ncRNA
233425	chr9	137602651	137603400	+	0	NA	Intergenic	MER74B|LTR|ERVL	-2615	NM_001317968	92714		NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
199576	chr6	118933121	118933600	+	0	NA	intron (NR_165494, intron 1 of 8)	AluY|SINE|Alu	1799	NM_001378372	254394		NM_017696	ENSG00000111877	MCM9	C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3	minichromosome maintenance 9 homologous recombination repair factor	protein-coding
114634	chr19	12991451	12992380	+	0	NA	Intergenic	AluSz|SINE|Alu	-3560	NM_002501	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
140018	chr2	231033421	231033680	+	0	NA	Intergenic	Intergenic	-3973	NM_001144994	257407		NM_001144994	ENSG00000204128	C2orf72	-	chromosome 2 open reading frame 72	protein-coding
226918	chr9	79578051	79578630	+	0	NA	intron (NM_001351556, intron 4 of 18)	intron (NM_001351556, intron 4 of 18)	5163	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
200598	chr6	136700151	136700630	+	0	NA	intron (NM_005923, intron 3 of 29)	intron (NM_005923, intron 3 of 29)	71276	NR_125858	101928461		NR_125858	ENSG00000234263	MAP3K5-AS1	-	MAP3K5 antisense RNA 1	ncRNA
118311	chr19	35484651	35484950	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	5664	NM_001244847	388533		NM_207392	ENSG00000188508	KRTDAP	KDAP|UNQ467	keratinocyte differentiation associated protein	protein-coding
158391	chr22	50510771	50511100	+	0	NA	intron (NM_014551, intron 1 of 8)	AluY|SINE|Alu	2711	NM_001185011	29781		NM_014551	ENSG00000025770	NCAPH2	CAPH2	non-SMC condensin II complex subunit H2	protein-coding
156889	chr22	42152271	42152430	+	0	NA	Intergenic	CpG	-7796	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
5848	chr1	26719901	26721100	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	24485	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
95958	chr17	39092151	39093200	+	0	NA	intron (NM_020405, intron 7 of 13)	MIRc|SINE|MIR	35656	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
22681	chr1	223835871	223836530	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	9747	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
16566	chr1	154984701	154985750	+	0	NA	intron (NM_025207, intron 1 of 6)	intron (NM_025207, intron 1 of 6)	1881	NM_001184891	80308		NM_025207	ENSG00000160688	FLAD1	FAD1|FADS|LSMFLAD|PP591	flavin adenine dinucleotide synthetase 1	protein-coding
126070	chr2	25789351	25789530	+	0	NA	intron (NM_001369347, intron 1 of 9)	L1ME3A|LINE|L1	5251	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
231539	chr9	131463451	131463800	+	0	NA	intron (NM_013318, intron 11 of 31)	intron (NM_013318, intron 11 of 31)	-22040	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
101537	chr17	67925651	67926230	+	0	NA	intron (NM_182641, intron 15 of 27)	Kanga2_a|DNA|TcMar-Tc2	67666	NM_181656	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
182090	chr5	55997701	55998130	+	0	NA	intron (NR_102755, intron 1 of 1)	L2|LINE|L2	2748	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
124931	chr2	8551721	8552550	+	0	NA	Intergenic	Intergenic	31657	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
165692	chr3	101940601	101941000	+	0	NA	promoter-TSS (NR_026934)	promoter-TSS (NR_026934)	-59	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
182483	chr5	62402421	62402680	+	0	NA	intron (NM_001348077, intron 2 of 11)	intron (NM_001348077, intron 2 of 11)	1355	NM_014473	27292		NM_014473	ENSG00000086189	DIMT1	DIM1|DIMT1L|HSA9761|HUSSY5	DIM1 rRNA methyltransferase and ribosome maturation factor	protein-coding
79499	chr16	785001	786250	+	0	NA	3' UTR (NM_001324411, exon 5 of 5)	3' UTR (NM_001324411, exon 5 of 5)	2756	NM_001369658	113000		NM_058192	ENSG00000007376	RPUSD1	C16orf40|RLUCL	RNA pseudouridine synthase domain containing 1	protein-coding
9779	chr1	53509221	53509850	+	0	NA	intron (NM_147193, intron 8 of 9)	intron (NM_147193, intron 8 of 9)	50136	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
185814	chr5	132443951	132444450	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	33271	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
105238	chr17	82385051	82386330	+	0	NA	Intergenic	Intergenic	13925	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
41454	chr11	66107621	66108750	+	0	NA	intron (NM_018026, intron 1 of 23)	MLT1B|LTR|ERVL-MaLR	37913	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
13077	chr1	111511201	111511950	+	0	NA	intron (NM_001081976, intron 1 of 5)	intron (NM_001081976, intron 1 of 5)	-7942	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
207505	chr7	44769621	44770550	+	0	NA	TTS (NM_031449)	TTS (NM_031449)	13897	NM_174929	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
8587	chr1	41385471	41386030	+	0	NA	Intergenic	Intergenic	-10081	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
221426	chr8	123770851	123771430	+	0	NA	intron (NM_001317918, intron 1 of 22)	intron (NM_001317918, intron 1 of 22)	2701	NM_001317918	157769		NM_144963	ENSG00000176853	FAM91A1	-	family with sequence similarity 91 member A1	protein-coding
149265	chr21	26147771	26148400	+	0	NA	intron (NM_001136131, intron 1 of 15)	intron (NM_001136131, intron 1 of 15)	-7695	NM_001136016	351		NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|alpha-sAPP|preA4	amyloid beta precursor protein	protein-coding
46140	chr11	123045801	123046200	+	0	NA	Intergenic	AluYj4|SINE|Alu	12156	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
87004	chr16	68241601	68242200	+	0	NA	Intergenic	AluY|SINE|Alu	-3473	NM_001363551	23659		NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	phospholipase A2 group XV	protein-coding
215466	chr7	158148871	158149030	+	0	NA	intron (NM_130842, intron 5 of 21)	intron (NM_130842, intron 5 of 21)	294365	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
73779	chr15	45633121	45633780	+	0	NA	intron (NM_001271213, intron 2 of 10)	AluSx1|SINE|Alu	-1579	NM_021199	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
94606	chr17	29746051	29746350	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	15232	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
26673	chr10	22619401	22619600	+	0	NA	intron (NM_005028, intron 1 of 9)	AluSx|SINE|Alu	94608	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
225643	chr9	36381521	36381780	+	0	NA	intron (NM_194332, intron 1 of 10)	MER49|LTR|ERV1	18619	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
170911	chr3	194132151	194132250	+	0	NA	Intergenic	Intergenic	-3948	NM_005524	3280		NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
188690	chr5	157288571	157289330	+	0	NA	intron (NM_001291721, intron 3 of 29)	MIRc|SINE|MIR	19626	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
167382	chr3	128802451	128802750	+	0	NA	intron (NM_004637, intron 3 of 5)	AluSc8|SINE|Alu	-44208	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
7847	chr1	36350501	36351300	+	0	NA	intron (NM_032017, intron 7 of 11)	intron (NM_032017, intron 7 of 11)	-26746	NM_018166	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
195326	chr6	36610771	36611750	+	0	NA	Intergenic	Intergenic	11252	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
36955	chr11	11157201	11157480	+	0	NA	Intergenic	Intergenic	195910	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
111835	chr19	4534801	4535630	+	0	NA	promoter-TSS (NM_001013706)	promoter-TSS (NM_001013706)	9	NM_001013706	440503		NM_001013706	ENSG00000214456	PLIN5	LSDA5|LSDP5|MLDP|OXPAT	perilipin 5	protein-coding
123494	chr19	54197171	54197530	+	0	NA	Intergenic	Intergenic	-3508	NM_001321701	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
41232	chr11	65718621	65719330	+	0	NA	3' UTR (NM_032193, exon 4 of 4)	3' UTR (NM_032193, exon 4 of 4)	1823	NM_032193	84153		NM_032193	ENSG00000172922	RNASEH2C	AGS3|AYP1	ribonuclease H2 subunit C	protein-coding
233053	chr9	137067521	137068600	+	0	NA	intron (NM_178448, intron 1 of 5)	intron (NM_178448, intron 1 of 5)	2497	NM_178448	89958		NM_178448	ENSG00000186193	SAPCD2	C9orf140|p42.3	suppressor APC domain containing 2	protein-coding
93028	chr17	17257971	17258130	+	0	NA	intron (NM_001316355, intron 7 of 10)	intron (NM_001316355, intron 7 of 10)	-20882	NM_144606	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
36437	chr11	4654701	4654950	+	0	NA	3' UTR (NM_152430, exon 2 of 2)	3' UTR (NM_152430, exon 2 of 2)	10843	NM_152430	143503		NM_152430	ENSG00000180785	OR51E1	D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2	olfactory receptor family 51 subfamily E member 1	protein-coding
5074	chr1	24675671	24676700	+	0	NA	Intergenic	AluSx1|SINE|Alu	32606	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
66260	chr14	61362201	61362400	+	0	NA	intron (NM_006255, intron 1 of 13)	AluJo|SINE|Alu	40857	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
188946	chr5	160478951	160479330	+	0	NA	intron (NR_132748, intron 1 of 1)	L1PA8|LINE|L1	4738	NR_036095	100422938		NR_036095		MIR3142	-	microRNA 3142	ncRNA
231300	chr9	130047201	130047700	+	0	NA	Intergenic	AluSg|SINE|Alu	-4261	NM_001363755	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
177612	chr4	121129971	121130130	+	0	NA	Intergenic	Intergenic	34271	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
117285	chr19	19480701	19481700	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	34348	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
100265	chr17	59564971	59566230	+	0	NA	promoter-TSS (NM_001166301)	promoter-TSS (NM_001166301)	-10	NM_001166301	79665		NM_024612	ENSG00000108406	DHX40	ARG147|DDX40|PAD	DEAH-box helicase 40	protein-coding
24602	chr1	246450771	246450930	+	0	NA	intron (NM_001167740, intron 1 of 11)	intron (NM_001167740, intron 1 of 11)	-33438	NM_022743	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
45798	chr11	119325421	119325680	+	0	NA	Intergenic	AluJb|SINE|Alu	-8420	NM_006500	4162		NM_006500	ENSG00000076706	MCAM	CD146|HEMCAM|METCAM|MUC18|MelCAM	melanoma cell adhesion molecule	protein-coding
18175	chr1	160803601	160804230	+	0	NA	intron (NM_001261456, intron 2 of 9)	AluJb|SINE|Alu	7741	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
218533	chr8	53876601	53877000	+	0	NA	intron (NM_001286674, intron 1 of 2)	intron (NM_001286674, intron 1 of 2)	-4072	NR_104579	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
42656	chr11	72482301	72482730	+	0	NA	Intergenic	Intergenic	-47831	NM_001258394	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
134637	chr2	144429271	144429830	+	0	NA	intron (NM_014795, intron 3 of 9)	intron (NM_014795, intron 3 of 9)	-90064	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
204639	chr7	5414401	5414600	+	0	NA	intron (NM_001080495, intron 2 of 29)	AluY|SINE|Alu	9046	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
237804	chrX	129930801	129933600	+	0	NA	Intergenic	CpG	26036	NM_006649	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
66295	chr14	61394951	61395500	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	73782	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
12092	chr1	99820501	99821150	+	0	NA	Intergenic	Charlie2a|DNA|hAT-Charlie	-29536	NM_000642	178		NM_000028	ENSG00000162688	AGL	GDE	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein-coding
30683	chr10	80517901	80518100	+	0	NA	3' UTR (NM_001351267, exon 11 of 11)	3' UTR (NM_001351267, exon 11 of 11)	17942	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
120828	chr19	45498001	45499000	+	0	NA	promoter-TSS (NM_001080401)	promoter-TSS (NM_001080401)	27	NM_001080401	147699		NM_178494	ENSG00000213889	PPM1N	-	protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)	protein-coding
169847	chr3	177187651	177187950	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	8678	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
225744	chr9	37042021	37042280	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-7882	NM_001280556	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
136893	chr2	189438671	189438830	+	0	NA	Intergenic	L1ME1|LINE|L1	-2683	NM_001303096	84128		NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
118667	chr19	37513551	37513660	+	0	NA	intron (NM_001013659, intron 2 of 7)	intron (NM_001013659, intron 2 of 7)	-6518	NR_110723	101927720		NR_110723	ENSG00000266916	ZNF793-AS1	-	ZNF793 antisense RNA 1 (head to head)	ncRNA
190254	chr5	178796951	178797250	+	0	NA	intron (NR_135095, intron 4 of 10)	intron (NR_135095, intron 4 of 10)	21335	NR_024035	729522		NR_024035	ENSG00000291019	AACSP1	AACSL	acetoacetyl-CoA synthetase pseudogene 1	pseudo
6964	chr1	31769851	31769950	+	0	NA	Intergenic	Intergenic	-5560	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
35013	chr11	548871	549030	+	0	NA	intron (NM_198075, intron 6 of 13)	L1M7|LINE|L1	-10312	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
40555	chr11	64329221	64329680	+	0	NA	Intergenic	Intergenic	-10754	NM_032251	283234		NM_032251	ENSG00000168071	CCDC88B	BRLZ|CCDC88|HKRP3|gipie	coiled-coil domain containing 88B	protein-coding
131011	chr2	87825691	87826400	+	0	NA	promoter-TSS (NM_001078170)	promoter-TSS (NM_001078170)	-197	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
232267	chr9	134418701	134418900	+	0	NA	intron (NM_001291921, intron 4 of 8)	intron (NM_001291921, intron 4 of 8)	12240	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
102269	chr17	75288671	75291030	+	0	NA	promoter-TSS (NM_001126122)	promoter-TSS (NM_001126122)	-401	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
65427	chr14	50943751	50945150	+	0	NA	promoter-TSS (NM_001163940)	promoter-TSS (NM_001163940)	33	NM_002863	5836		NM_002863	ENSG00000100504	PYGL	GSD6	glycogen phosphorylase L	protein-coding
113748	chr19	10497101	10497730	+	0	NA	intron (NM_012289, intron 2 of 5)	FordPrefect_a|DNA|hAT-Tip100	5356	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
43162	chr11	75344301	75345130	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	6946	NM_004041	408		NM_004041	ENSG00000137486	ARRB1	ARB1|ARR1	arrestin beta 1	protein-coding
103357	chr17	78111051	78111150	+	0	NA	3' UTR (NM_001374593, exon 19 of 19)	3' UTR (NM_001374593, exon 19 of 19)	17655	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
233359	chr9	137461101	137463000	+	0	NA	intron (NM_001098537, intron 31 of 34)	CpG-29240	-2716	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228559	chr9	101572251	101572750	+	0	NA	3' UTR (NM_133445, exon 9 of 9)	3' UTR (NM_133445, exon 9 of 9)	22469	NM_147180	5535		NM_147180	ENSG00000188386	PPP3R2	PPP3RL	protein phosphatase 3 regulatory subunit B, beta	protein-coding
138081	chr2	202032351	202034600	+	0	NA	Intergenic	CpG	-1112	NM_003507	8324		NM_003507	ENSG00000155760	FZD7	FzE3	frizzled class receptor 7	protein-coding
44247	chr11	100584321	100584400	+	0	NA	Intergenic	L2b|LINE|L2	-102928	NM_001367945	143872		NM_032021	ENSG00000165895	ARHGAP42	AD031|GRAF3|TMEM133	Rho GTPase activating protein 42	protein-coding
50513	chr12	47823851	47824680	+	0	NA	Intergenic	Intergenic	-4362	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
80040	chr16	1955771	1955930	+	0	NA	Intergenic	Intergenic	-1161	NM_005061	6123		NM_005061	ENSG00000140986	RPL3L	CMD2D	ribosomal protein L3 like	protein-coding
83194	chr16	23504001	23504300	+	0	NA	intron (NM_015044, intron 1 of 16)	MIR|SINE|MIR	6344	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
15155	chr1	148948621	148949380	+	0	NA	intron (NM_001198834, intron 5 of 43)	L1ME1|LINE|L1	-3124	NM_001002811	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
169525	chr3	170144451	170144850	+	0	NA	intron (NM_001308116, intron 6 of 14)	L1ME2|LINE|L1	37083	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
207164	chr7	43596401	43596850	+	0	NA	intron (NM_004760, intron 2 of 6)	AluSx|SINE|Alu	13517	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
135979	chr2	172109351	172109650	+	0	NA	intron (NR_126376, intron 4 of 4)	intron (NR_126376, intron 4 of 4)	6494	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
210184	chr7	98841601	98842070	+	0	NA	Intergenic	Intergenic	28179	NM_152913	222865		NM_152913	ENSG00000166448	TMEM130	-	transmembrane protein 130	protein-coding
234563	chrX	19740951	19741400	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	58598	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
205977	chr7	26174021	26174680	+	0	NA	intron (NM_004289, intron 1 of 3)	L2a|LINE|L2	22152	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
63242	chr13	113937271	113937430	+	0	NA	Intergenic	Intergenic	-8359	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
97425	chr17	43508551	43508930	+	0	NA	intron (NR_136225, intron 16 of 23)	AluY|SINE|Alu	21695	NM_001261439	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
871	chr1	1626571	1626730	+	0	NA	exon (NM_001170686, exon 9 of 20)	exon (NM_001170686, exon 9 of 20)	-5523	NM_006983	8510		NM_006983	ENSG00000189409	MMP23B	MIFR|MIFR-1|MMP22|MMP23A	matrix metallopeptidase 23B	protein-coding
70528	chr14	102437951	102438350	+	0	NA	exon (NM_014844, exon 10 of 20)	exon (NM_014844, exon 10 of 20)	71626	NM_152326	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
11704	chr1	91859821	91860280	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	26101	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
124512	chr2	28601	28800	+	0	NA	Intergenic	MER34A|LTR|ERV1	17805	NM_001077710	642273		NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
212950	chr7	130945001	130945780	+	0	NA	non-coding (NR_109851, exon 6 of 6)	non-coding (NR_109851, exon 6 of 6)	31926	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
217315	chr8	27408221	27408480	+	0	NA	intron (NM_173174, intron 7 of 35)	MER39B|LTR|ERV1	-25020	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
111769	chr19	4397471	4398380	+	0	NA	intron (NM_001199943, intron 1 of 8)	AluJo|SINE|Alu	2622	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
215498	chr7	158590721	158591380	+	0	NA	promoter-TSS (NR_049893)	promoter-TSS (NR_049893)	421	NR_132379	105375616		NR_132379		LINC01022	-	long intergenic non-protein coding RNA 1022	ncRNA
141419	chr2	240980051	240980350	+	0	NA	intron (NM_001351305, intron 27 of 31)	intron (NM_001351305, intron 27 of 31)	-12749	NR_033841	200772		NR_033841	ENSG00000233392	UICLM	CROCC2-AS1	up-regulated in colorectal cancer liver metastasis	ncRNA
7545	chr1	34968171	34968780	+	0	NA	Intergenic	AluJb|SINE|Alu	10231	NR_037869	653160		NR_037869	ENSG00000293382	GPR199P	-	G protein-coupled receptor 199, pseudogene	ncRNA
125729	chr2	20650451	20651950	+	0	NA	promoter-TSS (NM_022460)	promoter-TSS (NM_022460)	-102	NM_022460	64342		NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
97373	chr17	43319501	43320350	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-19694	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
38868	chr11	47344471	47344630	+	0	NA	intron (NM_000256, intron 12 of 33)	intron (NM_000256, intron 12 of 33)	8152	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
8885	chr1	43704671	43705230	+	0	NA	3' UTR (NM_014663, exon 22 of 22)	3' UTR (NM_014663, exon 22 of 22)	2391	NR_033827	100132774		NR_033827		KDM4A-AS1	-	KDM4A antisense RNA 1	ncRNA
90481	chr17	1394601	1395530	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	5157	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
112106	chr19	5581971	5582450	+	0	NA	Intergenic	Intergenic	-14176	NR_027064								
84940	chr16	31338101	31338850	+	0	NA	Intergenic	L1PA4|LINE|L1	-16701	NM_001286375	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
227182	chr9	87759551	87759850	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-13215	NR_027917	392360		NM_001023564	ENSG00000290757	CTSL3P	CTSL3|HCTSL-s	cathepsin L family member 3, pseudogene	pseudo
3060	chr1	12168871	12169730	+	0	NA	intron (NM_001066, intron 1 of 9)	MIRb|SINE|MIR	2309	NM_001066	7133		NM_001066	ENSG00000028137	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	TNF receptor superfamily member 1B	protein-coding
49510	chr12	25364351	25364450	+	0	NA	Intergenic	AluY|SINE|Alu	-113471	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
212600	chr7	129094801	129095550	+	0	NA	Intergenic	Intergenic	-31096	NR_002144	407835		NR_002144		LOC407835	-	mitogen-activated protein kinase kinase 2 pseudogene	pseudo
235072	chrX	40169401	40170360	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	7397	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
58136	chr12	124903401	124903600	+	0	NA	Intergenic	AluSx|SINE|Alu	11150	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
122987	chr19	50812351	50812800	+	0	NA	Intergenic	Intergenic	-5106	NR_038359	284365		NR_038359	ENSG00000293414	LINC01869	-	long intergenic non-protein coding RNA 1869	ncRNA
132064	chr2	101255621	101256030	+	0	NA	intron (NM_017546, intron 1 of 6)	intron (NM_017546, intron 1 of 6)	2939	NM_017546	55571		NM_017546	ENSG00000158435	CNOT11	C2orf29|C40	CCR4-NOT transcription complex subunit 11	protein-coding
38161	chr11	35943801	35944230	+	0	NA	promoter-TSS (NM_001304263)	promoter-TSS (NM_001304263)	34	NM_001304263	143458		NM_174902	ENSG00000179241	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding
199451	chr6	117600771	117600930	+	0	NA	intron (NM_020399, intron 1 of 8)	intron (NM_020399, intron 1 of 8)	1661	NM_001017408	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
148489	chr20	64059271	64060550	+	0	NA	intron (NM_198723, intron 1 of 10)	intron (NM_198723, intron 1 of 10)	2938	NM_198723	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
64167	chr14	22921651	22921950	+	0	NA	intron (NR_120600, intron 1 of 1)	AluY|SINE|Alu	2344	NR_120599	100505758		NR_120599	ENSG00000237054	PRMT5-AS1	-	PRMT5 antisense RNA 1	ncRNA
204701	chr7	5520231	5521530	+	0	NA	intron (NR_126168, intron 1 of 3)	AluSx|SINE|Alu	7026	NR_126168	221946		NR_126168		LOC221946	-	uncharacterized LOC221946	ncRNA
138200	chr2	202672271	202672430	+	0	NA	intron (NM_173511, intron 1 of 7)	AluSz|SINE|Alu	37381	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
21464	chr1	205582301	205582900	+	0	NA	intron (NM_181644, intron 3 of 9)	intron (NM_181644, intron 3 of 9)	-13295	NR_152721	284578		NR_027086		MFSD4A-AS1	-	MFSD4A antisense RNA 1	ncRNA
161754	chr3	44685201	44685750	+	0	NA	intron (NR_157564, intron 1 of 2)	CpG	178	NR_157564	112840933		NR_157564		ZKSCAN7-AS1	-	ZKSCAN7 ZNF cluster antisense RNA 1	ncRNA
129991	chr2	74032001	74033050	+	0	NA	intron (NM_001366022, intron 2 of 10)	intron (NM_001366022, intron 2 of 10)	29833	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
162628	chr3	48739821	48740550	+	0	NA	Intergenic	Intergenic	-22907	NM_001190316	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
17789	chr1	159783571	159783930	+	0	NA	Intergenic	Intergenic	2788	NM_001319659	54935		NM_017823	ENSG00000158716	DUSP23	DUSP25|LDP-3|LDP3|MOSP|VHZ	dual specificity phosphatase 23	protein-coding
93398	chr17	18322721	18323180	+	0	NA	exon (NM_144775, exon 2 of 2)	exon (NM_144775, exon 2 of 2)	7657	NM_144775	140775		NM_144775	ENSG00000176994	SMCR8	DENND8A	SMCR8-C9orf72 complex subunit	protein-coding
177998	chr4	139294601	139295110	+	0	NA	intron (NM_001184987, intron 3 of 4)	intron (NM_001184987, intron 3 of 4)	6355	NM_001184991	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
64369	chr14	24130901	24131300	+	0	NA	promoter-TSS (NM_203402)	promoter-TSS (NM_203402)	-366	NM_203402	161247		NM_203402	ENSG00000139914	FITM1	FIT1	fat storage inducing transmembrane protein 1	protein-coding
130707	chr2	86717901	86718100	+	0	NA	intron (NM_001198954, intron 1 of 7)	intron (NM_001198954, intron 1 of 7)	-2291	NM_022780	64795		NM_022780	ENSG00000153561	RMND5A	CTLH|GID2|GID2A|RMD5|p44CTLH	required for meiotic nuclear division 5 homolog A	protein-coding
200709	chr6	137490521	137490980	+	0	NA	Intergenic	Intergenic	3644	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
66486	chr14	61661421	61661780	+	0	NA	Intergenic	Intergenic	-33913	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
237210	chrX	108277551	108277650	+	0	NA	intron (NM_033641, intron 3 of 44)	L1PA3|LINE|L1	160822	NM_033641	1288		NM_001847	ENSG00000197565	COL4A6	CXDELq22.3|DELXq22.3|DFNX6	collagen type IV alpha 6 chain	protein-coding
178353	chr4	145939701	145940630	+	0	NA	Intergenic	Intergenic	-1342	NM_178835	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
67283	chr14	69335351	69336050	+	0	NA	intron (NM_020692, intron 9 of 15)	intron (NM_020692, intron 9 of 15)	62599	NM_004450	2079		NM_004450	ENSG00000100632	ERH	DROER	ERH mRNA splicing and mitosis factor	protein-coding
103965	chr17	79937671	79938250	+	0	NA	3' UTR (NM_001271844, exon 8 of 8)	3' UTR (NM_001271844, exon 8 of 8)	-11235	NR_110850	101928766		NR_110850	ENSG00000262585	LINC01979	-	long intergenic non-protein coding RNA 1979	ncRNA
92662	chr17	10702371	10702750	+	0	NA	intron (NM_020233, intron 1 of 3)	MLT1K|LTR|ERVL-MaLR	4966	NM_020233	56985		NM_020233	ENSG00000170222	ADPRM	C17orf48|MDS006|NBLA03831	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding
77087	chr15	78912451	78912750	+	0	NA	Intergenic	Intergenic	32446	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
230135	chr9	127731351	127731850	+	0	NA	TTS (NM_001317037)	TTS (NM_001317037)	3694	NM_001252018	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
12322	chr1	100952701	100953100	+	0	NA	intron (NM_133496, intron 8 of 10)	intron (NM_133496, intron 8 of 10)	56810	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
118305	chr19	35451051	35451950	+	0	NA	3' UTR (NM_001370087, exon 2 of 2)	3' UTR (NM_001370087, exon 2 of 2)	3243	NM_001370087	2867		NM_005306	ENSG00000126262	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
159614	chr3	15264721	15265750	+	0	NA	TTS (NR_046084)	TTS (NR_046084)	11051	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
146497	chr20	49888421	49889280	+	0	NA	non-coding (NR_048538, exon 14 of 14)	non-coding (NR_048538, exon 14 of 14)	24889	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
119694	chr19	41117101	41117300	+	0	NA	intron (NR_135528, intron 3 of 9)	AluSx|SINE|Alu	2768	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
185081	chr5	118792171	118792330	+	0	NA	Intergenic	Intergenic	-182336	NR_036262	100422885		NR_036262	ENSG00000283498	MIR1244-2	-	microRNA 1244-2	ncRNA
56764	chr12	120159451	120159750	+	0	NA	intron (NM_006836, intron 24 of 57)	intron (NM_006836, intron 24 of 57)	-4101	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
156767	chr22	41857101	41858000	+	0	NA	intron (NR_103834, intron 1 of 21)	intron (NR_103834, intron 1 of 21)	-22885	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
62080	chr13	94429151	94429300	+	0	NA	Intergenic	Intergenic	50457	NM_001922	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
121102	chr19	45925421	45926180	+	0	NA	Intergenic	Intergenic	-11022	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
157483	chr22	45309001	45310730	+	0	NA	promoter-TSS (NM_001349916)	promoter-TSS (NM_001349916)	27	NM_001349914	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
188979	chr5	163510351	163510680	+	0	NA	intron (NM_013283, intron 1 of 6)	AluSq|SINE|Alu	4896	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
166175	chr3	111673451	111673550	+	0	NA	Intergenic	Intergenic	-1176	NM_153268	257068		NM_153268	ENSG00000240891	PLCXD2	-	phosphatidylinositol specific phospholipase C X domain containing 2	protein-coding
67076	chr14	68089251	68089350	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	265708	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
80611	chr16	2961601	2962500	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-2225	NM_001253726	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
76477	chr15	74868851	74868950	+	0	NA	intron (NM_001320778, intron 1 of 9)	AluSq2|SINE|Alu	4465	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
89132	chr16	88510521	88510850	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	20368	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
160556	chr3	30684401	30684630	+	0	NA	intron (NM_001024847, intron 6 of 7)	intron (NM_001024847, intron 6 of 7)	77914	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
168202	chr3	141230971	141233380	+	0	NA	intron (NM_001282728, intron 1 of 6)	CpG	350	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
146511	chr20	49909871	49910030	+	0	NA	intron (NM_006038, intron 1 of 2)	intron (NM_006038, intron 1 of 2)	3789	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
103851	chr17	79715901	79716100	+	0	NA	Intergenic	Intergenic	8734	NR_109783	100652929		NR_109783	ENSG00000267719	LINC02078	HP09025	long intergenic non-protein coding RNA 2078	ncRNA
3843	chr1	16915351	16915450	+	0	NA	Intergenic	AluJb|SINE|Alu	-6531	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
238830	chrX	154441321	154441980	+	0	NA	exon (NM_001493, exon 8 of 11)	exon (NM_001493, exon 8 of 11)	-2491	NM_004699	9130		NM_004699	ENSG00000071859	FAM50A	9F|DXS9928E|HXC-26|HXC26|MRXSA|XAP5	family with sequence similarity 50 member A	protein-coding
33568	chr10	119442121	119442780	+	0	NA	intron (NM_005308, intron 11 of 15)	intron (NM_005308, intron 11 of 15)	64478	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
22666	chr1	223780851	223781230	+	0	NA	intron (NM_001031685, intron 17 of 17)	intron (NM_001031685, intron 17 of 17)	64907	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
145364	chr20	41155971	41156130	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-12973	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
146836	chr20	51414681	51415500	+	0	NA	intron (NM_012340, intron 9 of 10)	AluJo|SINE|Alu	37887	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
161653	chr3	43322801	43323350	+	0	NA	intron (NM_017719, intron 3 of 6)	L1MD|LINE|L1	28887	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
16581	chr1	155012551	155012980	+	0	NA	intron (NM_001377451, intron 4 of 5)	intron (NM_001377451, intron 4 of 5)	9963	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
75692	chr15	67836361	67837050	+	0	NA	intron (NR_120345, intron 2 of 2)	intron (NR_120345, intron 2 of 2)	2174	NR_120345	101929076		NR_120345	ENSG00000245719	SKOR1-AS1	-	SKOR1 antisense RNA 1	ncRNA
165918	chr3	107240101	107241230	+	0	NA	promoter-TSS (NR_028301)	promoter-TSS (NR_028301)	-27	NR_028303	100302640		NR_028303		LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
153023	chr22	23234671	23235030	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-27917	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
33739	chr10	122402671	122403030	+	0	NA	intron (NR_165162, intron 5 of 11)	HAL1|LINE|L1	-14115	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
99185	chr17	49471471	49471630	+	0	NA	Intergenic	L2a|LINE|L2	-9801	NR_110805	101927207		NR_110805	ENSG00000249497	LINC02075	-	long intergenic non-protein coding RNA 2075	ncRNA
8355	chr1	40251021	40251700	+	0	NA	exon (NM_001008740, exon 2 of 2)	exon (NM_001008740, exon 2 of 2)	3423	NM_001008740	127391		NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
173211	chr4	6889321	6889580	+	0	NA	Intergenic	Intergenic	-19994	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
51352	chr12	51568051	51568350	+	0	NA	Intergenic	L1HS|LINE|L1	-23033	NM_001330260	6334		NM_014191	ENSG00000196876	SCN8A	BFIS5|CERIII|CIAT|DEE13|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4	sodium voltage-gated channel alpha subunit 8	protein-coding
48298	chr12	8985251	8985630	+	0	NA	intron (NR_137427, intron 1 of 2)	MER21A|LTR|ERVL	-4106	NM_005810	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
206091	chr7	27192521	27193380	+	0	NA	Intergenic	CpG	7141	NM_000522	3209		NM_000522	ENSG00000106031	HOXA13	HOX1|HOX1J	homeobox A13	protein-coding
116590	chr19	18256551	18256850	+	0	NA	TTS (NM_025249)	TTS (NM_025249)	-1281	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
156510	chr22	41367021	41367880	+	0	NA	5' UTR (NM_001145398, exon 1 of 4)	5' UTR (NM_001145398, exon 1 of 4)	117	NM_001145398	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
119793	chr19	41324451	41324550	+	0	NA	3' UTR (NM_052848, exon 5 of 5)	3' UTR (NM_052848, exon 5 of 5)	14023	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
159713	chr3	15686021	15686680	+	0	NA	intron (NM_001349277, intron 18 of 27)	intron (NM_001349277, intron 18 of 27)	11021	NR_036085	100422990		NR_036085	ENSG00000264354	MIR3134	-	microRNA 3134	ncRNA
185200	chr5	119399371	119399730	+	0	NA	3' UTR (NM_001286813, exon 3 of 3)	3' UTR (NM_001286813, exon 3 of 3)	43531	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
107333	chr18	45686501	45687980	+	0	NA	Intergenic	Intergenic	-36941	NM_001308278	6563		NM_015865	ENSG00000141469	SLC14A1	HUT11|HUT11A|HsT1341|JK|Jk(a)|Jk(b)|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 member 1 (Kidd blood group)	protein-coding
235168	chrX	41176401	41177050	+	0	NA	intron (NM_001039590, intron 21 of 44)	intron (NM_001039590, intron 21 of 44)	91280	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
161903	chr3	45975421	45976100	+	0	NA	intron (NM_024513, intron 4 of 17)	intron (NM_024513, intron 4 of 17)	20064	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
229141	chr9	114482451	114483080	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	20450	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
201813	chr6	150014251	150014800	+	0	NA	Intergenic	CpG	-9381	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
20565	chr1	198720771	198721150	+	0	NA	intron (NM_002838, intron 14 of 32)	intron (NM_002838, intron 14 of 32)	81920	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
132408	chr2	105801091	105801600	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	-50502	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
123006	chr19	51018451	51019550	+	0	NA	intron (NM_145888, intron 2 of 5)	CpG	709	NM_145888	5655		NM_002776	ENSG00000129451	KLK10	NES1|PRSSL1	kallikrein related peptidase 10	protein-coding
137380	chr2	196196701	196196900	+	0	NA	3' UTR (NM_020760, exon 29 of 29)	3' UTR (NM_020760, exon 29 of 29)	-25222	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
138814	chr2	216222651	216223180	+	0	NA	Intergenic	Intergenic	6026	NR_037701	150967		NM_001199924	ENSG00000260804	LINC01963	PKI55	long intergenic non-protein coding RNA 1963	ncRNA
200631	chr6	136822021	136823280	+	0	NA	promoter-TSS (NM_000288)	promoter-TSS (NM_000288)	58	NM_000288	5191		NM_000288	ENSG00000112357	PEX7	PBD9B|PTS2R|RCDP1|RD	peroxisomal biogenesis factor 7	protein-coding
23152	chr1	226725471	226725900	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	13490	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
211205	chr7	102620301	102620580	+	0	NA	Intergenic	Intergenic	-3682	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
58909	chr13	19673721	19673980	+	0	NA	TTS (NR_003272)	TTS (NR_003272)	40191	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
95440	chr17	36132421	36132680	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	28723	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
189513	chr5	173331701	173332210	+	0	NA	Intergenic	Intergenic	-2452	NM_003714	8614		NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
31658	chr10	97414711	97415630	+	0	NA	Intergenic	Intergenic	10887	NR_157582	644215		NR_157582		LOC644215	-	uncharacterized LOC644215	ncRNA
1214	chr1	2263551	2263850	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	35381	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
186710	chr5	138900771	138900930	+	0	NA	intron (NM_001324013, intron 4 of 12)	intron (NM_001324013, intron 4 of 12)	25450	NM_001324008	1495		NM_001903	ENSG00000044115	CTNNA1	CAP102|MDBS2|MDPT2	catenin alpha 1	protein-coding
54888	chr12	95852351	95852450	+	0	NA	intron (NR_135014, intron 1 of 2)	intron (NR_135014, intron 1 of 2)	6439	NR_135015	105369921		NR_135014	ENSG00000258343	SNRPF-DT	-	SNRPF divergent transcript	ncRNA
6720	chr1	29849071	29849330	+	0	NA	Intergenic	Intergenic	188412	NR_110790	101929406		NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
8166	chr1	39515551	39515800	+	0	NA	non-coding (NR_132962, exon 1 of 1)	non-coding (NR_132962, exon 1 of 1)	809	NR_132962	192217		NR_132962	ENSG00000237624	OXCT2P1	OXCT2P	3-oxoacid CoA-transferase 2 pseudogene 1	pseudo
131884	chr2	98730071	98731860	+	0	NA	intron (NM_012214, intron 1 of 15)	CpG	167	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
20590	chr1	198756321	198757580	+	0	NA	3' UTR (NM_080921, exon 30 of 30)	3' UTR (NM_080921, exon 30 of 30)	102032	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
169341	chr3	160061401	160061600	+	0	NA	intron (NR_108088, intron 3 of 9)	LTR12C|LTR|ERV1	40851	NR_104132	730109		NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
205808	chr7	24406221	24406830	+	0	NA	Intergenic	Intergenic	122335	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
237037	chrX	102934701	102935070	+	0	NA	intron (NR_146589, intron 10 of 11)	intron (NR_146589, intron 10 of 11)	-2387	NM_001031834	282808		NM_001031834	ENSG00000102128	RAB40AL	MRXSMP|RAR2|RLGP	RAB40A like	protein-coding
107039	chr18	32108801	32109600	+	0	NA	intron (NM_198128, intron 1 of 4)	AluJb|SINE|Alu	16594	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
208883	chr7	73837551	73838100	+	0	NA	intron (NM_152559, intron 5 of 5)	AluSx|SINE|Alu	4691	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
54181	chr12	77066851	77066950	+	0	NA	Intergenic	Intergenic	-1331	NM_203394	144455		NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
214860	chr7	151365071	151365430	+	0	NA	intron (NM_016118, intron 8 of 14)	Charlie6|DNA|hAT-Charlie	23438	NM_016118	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
235196	chrX	41343201	41343600	+	0	NA	intron (NM_001193417, intron 6 of 15)	MER58A|DNA|hAT-Charlie	9234	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
52598	chr12	56205451	56205900	+	0	NA	non-coding (NR_040053, exon 9 of 9)	non-coding (NR_040053, exon 9 of 9)	16026	NM_001242826	10193		NM_005785	ENSG00000181852	RNF41	FLRF|NRDP1|SBBI03	ring finger protein 41	protein-coding
193703	chr6	31137171	31138150	+	0	NA	3' UTR (NM_014069, exon 2 of 2)	3' UTR (NM_014069, exon 2 of 2)	1406	NM_014069	170680		NM_014069	ENSG00000204538	PSORS1C2	C6orf17|SPR1	psoriasis susceptibility 1 candidate 2	protein-coding
74711	chr15	63119951	63120600	+	0	NA	Intergenic	LOR1a|LTR|ERV1	-1586	NM_032857	114294		NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
135690	chr2	168773701	168773930	+	0	NA	non-coding (NR_045786, exon 4 of 4)	non-coding (NR_045786, exon 4 of 4)	12614	NR_045786	100861402		NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
2953	chr1	11909401	11910530	+	0	NA	Intergenic	Intergenic	1811	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
153329	chr22	24300221	24300750	+	0	NA	intron (NR_103546, intron 2 of 19)	L1PA8A|LINE|L1	29654	NM_001254732	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
73259	chr15	41825621	41826230	+	0	NA	non-coding (NR_049761, exon 30 of 30)	non-coding (NR_049761, exon 30 of 30)	-2160	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
186567	chr5	138477771	138478480	+	0	NA	Intergenic	AluSx1|SINE|Alu	12646	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
177966	chr4	139026051	139026350	+	0	NA	intron (NM_012118, intron 1 of 2)	AluSx|SINE|Alu	10419	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
135946	chr2	171957101	171957330	+	0	NA	intron (NR_027862, intron 3 of 9)	MLT1D-int|LTR|ERVL-MaLR	34754	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
174919	chr4	49111501	49111700	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	124958	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
193954	chr6	31683771	31683930	+	0	NA	Intergenic	Intergenic	-3477	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
142973	chr20	19995151	19995600	+	0	NA	intron (NM_001242581, intron 10 of 11)	intron (NM_001242581, intron 10 of 11)	-21915	NM_181528	51126		NM_016100	ENSG00000173418	NAA20	MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein-coding
101585	chr17	68074971	68075230	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26455	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
178059	chr4	140012621	140012880	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-115265	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
137234	chr2	191675571	191676450	+	0	NA	Intergenic	Intergenic	-2062	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
121474	chr19	47106471	47106630	+	0	NA	intron (NM_015168, intron 2 of 14)	intron (NM_015168, intron 2 of 14)	7226	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
202705	chr6	158816871	158817600	+	0	NA	promoter-TSS (NR_102425)	promoter-TSS (NR_102425)	-744	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
81089	chr16	4350621	4353480	+	0	NA	promoter-TSS (NM_016069)	promoter-TSS (NM_016069)	-729	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
85081	chr16	32933551	32933650	+	0	NA	Intergenic	Intergenic	-48458	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
212422	chr7	128271621	128271880	+	0	NA	Intergenic	CpG	30472	NM_000230	3952		NM_000230	ENSG00000174697	LEP	LEPD|OB|OBS	leptin	protein-coding
93156	chr17	17762621	17763080	+	0	NA	intron (NR_130894, intron 1 of 1)	(CCCCCCT)n|Simple_repeat|Simple_repeat	3452	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
102137	chr17	75085801	75086400	+	0	NA	Intergenic	L2b|LINE|L2	-1665	NM_001271765	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
232139	chr9	134032301	134032500	+	0	NA	TTS (NM_001355256)	TTS (NM_001355256)	6919	NM_001355256	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
108515	chr18	74291251	74292600	+	0	NA	promoter-TSS (NM_001190807)	promoter-TSS (NM_001190807)	38	NM_148923	1528		NM_001914	ENSG00000166347	CYB5A	CYB5|MCB5|METAG	cytochrome b5 type A	protein-coding
226840	chr9	77957671	77957860	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	74046	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
86857	chr16	67938001	67938200	+	0	NA	Intergenic	AluSx|SINE|Alu	-1250	NM_002801	5699		NM_002801	ENSG00000205220	PSMB10	LMP10|MECL1|PRAAS5|beta2i	proteasome 20S subunit beta 10	protein-coding
193604	chr6	30726601	30726800	+	0	NA	Intergenic	AluSx1|SINE|Alu	5062	NM_001293215	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
127445	chr2	42182221	42183030	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-12394	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226375	chr9	70262321	70263430	+	0	NA	intron (NM_015110, intron 1 of 24)	intron (NM_015110, intron 1 of 24)	3897	NM_015110	23137		NM_015110	ENSG00000198887	SMC5	ATELS2|SMC5L1	structural maintenance of chromosomes 5	protein-coding
61507	chr13	52846171	52846580	+	0	NA	exon (NM_032949, exon 1 of 3)	exon (NM_032949, exon 1 of 3)	2265	NM_002590	5100		NM_002590	ENSG00000136099	PCDH8	ARCADLIN|PAPC	protocadherin 8	protein-coding
96705	chr17	41527421	41528430	+	0	NA	exon (NM_002276, exon 1 of 6)	exon (NM_002276, exon 1 of 6)	383	NM_002276	3880		NM_002276	ENSG00000171345	KRT19	CK19|K19|K1CS	keratin 19	protein-coding
72445	chr15	31975921	31976380	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	-54333	NR_046324	1139		NM_000746	ENSG00000175344	CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor nicotinic alpha 7 subunit	protein-coding
192362	chr6	24666391	24667650	+	0	NA	promoter-TSS (NM_001160094)	promoter-TSS (NM_001160094)	-15	NM_001160094	55856		NM_018473	ENSG00000112304	ACOT13	HT012|PNAS-27|THEM2	acyl-CoA thioesterase 13	protein-coding
713	chr1	1429721	1430200	+	0	NA	TTS (NR_125994)	TTS (NR_125994)	3832	NM_001146685	643965		NM_001146685	ENSG00000205116	TMEM88B	-	transmembrane protein 88B	protein-coding
207932	chr7	50782401	50783330	+	0	NA	promoter-TSS (NM_001350814)	promoter-TSS (NM_001350814)	31	NM_001350814	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
159136	chr3	12648471	12648900	+	0	NA	intron (NM_001354691, intron 1 of 16)	AluSz6|SINE|Alu	14823	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
125538	chr2	15141371	15141530	+	0	NA	Intergenic	MIRc|SINE|MIR	419884	NM_015909	51594		NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	NBAS subunit of NRZ tethering complex	protein-coding
227205	chr9	88312301	88312780	+	0	NA	Intergenic	Intergenic	-75904	NM_006717	10927		NM_006717	ENSG00000106723	SPIN1	SPIN|TDRD24	spindlin 1	protein-coding
167639	chr3	129603301	129603500	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	3276	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
224364	chr9	7626451	7627010	+	0	NA	Intergenic	L1PA7|LINE|L1	173048	NM_033428	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
172616	chr4	2513371	2513730	+	0	NA	intron (NM_001185009, intron 8 of 8)	intron (NM_001185009, intron 8 of 8)	-21825	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
143591	chr20	31691021	31691280	+	0	NA	intron (NR_134257, intron 1 of 2)	AluSx|SINE|Alu	-30357	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
1174	chr1	2223221	2223680	+	0	NA	Intergenic	AluSx|SINE|Alu	-4869	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
120472	chr19	44738871	44739030	+	0	NA	Intergenic	Intergenic	-9758	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
35196	chr11	801751	802380	+	0	NA	exon (NM_145887, exon 7 of 16)	exon (NM_145887, exon 7 of 16)	3166	NM_145886	55367		NM_018494	ENSG00000177595	PIDD1	LRDD|MRT75|PIDD	p53-induced death domain protein 1	protein-coding
27154	chr10	28365751	28366280	+	0	NA	Intergenic	LTR48B|LTR|ERV1	-62951	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
49845	chr12	32677751	32678180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1235	NM_001278463	10059		NM_005690	ENSG00000087470	DNM1L	DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5	dynamin 1 like	protein-coding
195293	chr6	36534401	36534600	+	0	NA	intron (NM_007271, intron 2 of 13)	AluJr|SINE|Alu	12979	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
71392	chr14	105519621	105519880	+	0	NA	Intergenic	AluSz|SINE|Alu	-6833	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
209721	chr7	87004251	87004700	+	0	NA	intron (NM_001142749, intron 1 of 21)	intron (NM_001142749, intron 1 of 21)	35759	NM_001291990	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
26505	chr10	18651321	18652650	+	0	NA	promoter-TSS (NM_001351117)	promoter-TSS (NM_001351117)	-398	NM_001351117	221078		NM_182543	ENSG00000241058	NSUN6	4933414E04Rik|ARL5B-AS1|MRT82|NOPD1	NOP2/Sun RNA methyltransferase 6	protein-coding
116023	chr19	17162071	17162430	+	0	NA	intron (NM_004145, intron 8 of 39)	AluSx|SINE|Alu	-53107	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
101359	chr17	67206671	67207230	+	0	NA	intron (NM_001330447, intron 5 of 32)	AluSp|SINE|Alu	-37826	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
231357	chr9	130537501	130537730	+	0	NA	Intergenic	CpG	41879	NR_027440	100272217		NR_027440		LOC100272217	-	uncharacterized LOC100272217	ncRNA
55652	chr12	107319831	107320600	+	0	NA	promoter-TSS (NM_001347944)	promoter-TSS (NM_001347944)	-373	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
134930	chr2	151407601	151407800	+	0	NA	Intergenic	Intergenic	-2202	NM_001177664	55183		NM_018151	ENSG00000080345	RIF1	-	replication timing regulatory factor 1	protein-coding
30644	chr10	80462501	80462700	+	0	NA	intron (NM_001351270, intron 1 of 9)	intron (NM_001351270, intron 1 of 9)	3315	NM_001351270	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
176291	chr4	87226271	87226430	+	0	NA	Intergenic	AluSz|SINE|Alu	-5732	NM_001292006	57563		NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
14853	chr1	146386501	146388150	+	0	NA	Intergenic	Intergenic	10518	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
97863	chr17	45006051	45006150	+	0	NA	Intergenic	Intergenic	-37797	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
38378	chr11	44694351	44694850	+	0	NA	Intergenic	Intergenic	-32362	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
169437	chr3	162134651	162134750	+	0	NA	Intergenic	Intergenic	637892	NM_001080440	131149		NM_001080440	ENSG00000182447	OTOL1	C1QTNF15|C1QTNF16	otolin 1	protein-coding
203011	chr6	163420021	163420280	+	0	NA	intron (NM_206854, intron 1 of 6)	(CTTTT)n|Simple_repeat|Simple_repeat	5432	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
84442	chr16	30406821	30408100	+	0	NA	promoter-TSS (NM_001142305)	promoter-TSS (NM_001142305)	46	NM_016643	51333		NM_016643	ENSG00000179965	ZNF771	DSC43	zinc finger protein 771	protein-coding
197730	chr6	87145821	87146080	+	0	NA	Intergenic	Intergenic	-9615	NM_015021	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
153590	chr22	26772951	26773250	+	0	NA	intron (NR_110543, intron 2 of 5)	SVA_F|Retroposon|SVA	-87111	NR_146604	110091768		NR_146604		LOC110091768	-	uncharacterized LOC110091768	ncRNA
113510	chr19	10105601	10106950	+	0	NA	promoter-TSS (NM_020230)	promoter-TSS (NM_020230)	52	NM_001346139	56342		NM_020230	ENSG00000130810	PPAN	BXDC3|SSF|SSF-1|SSF1|SSF2	peter pan homolog	protein-coding
57740	chr12	122901001	122902090	+	0	NA	Intergenic	Intergenic	-5421	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
4801	chr1	23590471	23590950	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-31209	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
136071	chr2	173075761	173076730	+	0	NA	intron (NM_133646, intron 1 of 11)	CpG	399	NM_016653	51776		NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
169896	chr3	177600901	177601180	+	0	NA	intron (NR_047568, intron 2 of 3)	MIRc|SINE|MIR	159119	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
38667	chr11	46390451	46390750	+	0	NA	intron (NM_001366692, intron 1 of 1)	CpG	1068	NM_001366692	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
69604	chr14	97442001	97442600	+	0	NA	Intergenic	Intergenic	-16516	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
63811	chr14	21442551	21442850	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	-5425	NM_020920	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
64661	chr14	31561071	31562330	+	0	NA	intron (NM_025152, intron 1 of 10)	intron (NM_025152, intron 1 of 10)	296	NR_120408	80224		NM_025152	ENSG00000151413	NUBPL	C14orf127|IND1|MC1DN21|huInd1	NUBP iron-sulfur cluster assembly factor, mitochondrial	protein-coding
190311	chr5	179606121	179606630	+	0	NA	intron (NM_001040452, intron 16 of 17).2	intron (NM_001040452, intron 16 of 17).2	-2634	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
43908	chr11	88987451	88987550	+	0	NA	intron (NM_001143831, intron 2 of 9)	L1PA4|LINE|L1	76159	NM_000842	2915		NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
32269	chr10	102068701	102069100	+	0	NA	TTS (NM_024747)	TTS (NM_024747)	3551	NM_024747	79803		NM_024747	ENSG00000166189	HPS6	BLOC2S3	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding
90765	chr17	2058321	2059930	+	0	NA	TTS (NM_001256828)	TTS (NM_001256828)	2815	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
40626	chr11	64709421	64710130	+	0	NA	intron (NM_015080, intron 2 of 22)	L2a|LINE|L2	13422	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
204382	chr7	2984201	2984400	+	0	NA	intron (NM_001324281, intron 1 of 25)	MLT2B2|LTR|ERVL	59567	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
58225	chr12	128535051	128535150	+	0	NA	intron (NM_001136103, intron 2 of 8)	intron (NM_001136103, intron 2 of 8)	241008	NR_037406	100500817		NR_037406	ENSG00000265635	MIR3612	-	microRNA 3612	ncRNA
216344	chr8	16604001	16604230	+	0	NA	Intergenic	L1M6|LINE|L1	398230	NM_019851	26281		NM_019851	ENSG00000078579	FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
117474	chr19	19755071	19755230	+	0	NA	Intergenic	HSAT5|Satellite|Satellite	21263	NR_026956	284440		NM_182576		LINC00663	-	long intergenic non-protein coding RNA 663	ncRNA
120565	chr19	44988051	44988500	+	0	NA	intron (NM_001282175, intron 9 of 13)	intron (NM_001282175, intron 9 of 13)	-13189	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
175926	chr4	80303471	80303630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-32170	NM_001206997	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
146479	chr20	49804951	49805730	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-7373	NM_001260491	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
63118	chr13	113361421	113361850	+	0	NA	non-coding (NR_046541, exon 3 of 3)	non-coding (NR_046541, exon 3 of 3)	2495	NM_024719	79774		NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
130882	chr2	87417101	87417700	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-38027	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
164505	chr3	62188871	62189180	+	0	NA	intron (NM_001375471, intron 8 of 28)	intron (NM_001375471, intron 8 of 28)	129922	NR_038282	100506994		NR_038281	ENSG00000241472	PTPRG-AS1	-	PTPRG antisense RNA 1	ncRNA
162386	chr3	48088501	48089780	+	0	NA	promoter-TSS (NM_002375)	promoter-TSS (NM_002375)	-292	NM_001384844	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
113767	chr19	10520001	10520200	+	0	NA	Intergenic	Intergenic	-2135	NM_001166215	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
143417	chr20	29689071	29689900	+	0	NA	Intergenic	SST1|Satellite|centr	140766	NR_133643	105379478		NR_133643		FAM242B	-	family with sequence similarity 242 member B	ncRNA
77439	chr15	84217051	84217150	+	0	NA	intron (NR_158192, intron 1 of 6)	HERVIP10B3-int|LTR|ERV1	13036	NR_158192	102724135		NR_158192		LOC102724135	-	uncharacterized LOC102724135	pseudo
9973	chr1	54886571	54887750	+	0	NA	promoter-TSS (NM_014762)	promoter-TSS (NM_014762)	35	NM_014762	1718		NM_014762	ENSG00000116133	DHCR24	DCE|Nbla03646|SELADIN1|seladin-1	24-dehydrocholesterol reductase	protein-coding
232248	chr9	134396801	134397930	+	0	NA	intron (NM_001291920, intron 1 of 9)	L3|LINE|CR1	-9195	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
90790	chr17	2092571	2092730	+	0	NA	intron (NM_001256827, intron 6 of 11)	intron (NM_001256827, intron 6 of 11)	-3889	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
188997	chr5	168228021	168228350	+	0	NA	intron (NM_001080428, intron 21 of 24)	intron (NM_001080428, intron 21 of 24)	4187	NR_109894	101927862		NR_109894	ENSG00000253978	TENM2-AS1	CTB-178M22.2	TENM2 antisense RNA 2	ncRNA
118648	chr19	37301001	37301280	+	0	NA	Intergenic	CpG	-11697	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
96133	chr17	39661151	39661650	+	0	NA	intron (NM_001165938, intron 12 of 13)	intron (NM_001165938, intron 12 of 13)	-3949	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
111445	chr19	3812051	3812880	+	0	NA	intron (NM_015174, intron 14 of 18)	intron (NM_015174, intron 14 of 18)	-10666	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
80319	chr16	2424071	2424230	+	0	NA	intron (NR_003574, intron 14 of 16)	intron (NR_003574, intron 14 of 16)	-5297	NM_001761	899		NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1|FTDALS5	cyclin F	protein-coding
42525	chr11	70703251	70703350	+	0	NA	intron (NM_001379226, intron 4 of 15)	intron (NM_001379226, intron 4 of 15)	-41459	NM_133266	22941		NM_012309	ENSG00000162105	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
212657	chr7	129530821	129531730	+	0	NA	Intergenic	AluJb|SINE|Alu	28744	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
50704	chr12	48927171	48927700	+	0	NA	Intergenic	L1ME2|LINE|L1	-1888	NM_001143782	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
169868	chr3	177281301	177281550	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-13017	NR_047465	100820709		NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
16996	chr1	156004871	156005850	+	0	NA	Intergenic	Intergenic	15591	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
128493	chr2	58350571	58350730	+	0	NA	Intergenic	Intergenic	74773	NR_147010	105374744		NR_147010		LINC01795	-	long intergenic non-protein coding RNA 1795	ncRNA
189132	chr5	171089451	171089550	+	0	NA	intron (NM_022897, intron 14 of 27)	L1PA2|LINE|L1	-219748	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
167701	chr3	130749321	130750130	+	0	NA	Intergenic	L2a|LINE|L2	-2896	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
208259	chr7	65731571	65732100	+	0	NA	intron (NR_038378, intron 2 of 7)	intron (NR_038378, intron 2 of 7)	19089	NR_103527	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
138257	chr2	203252571	203253150	+	0	NA	intron (NM_001371700, intron 2 of 8)	HERV3-int|LTR|ERV1	13519	NM_001371698	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
122569	chr19	49671951	49673050	+	0	NA	intron (NM_138639, intron 6 of 6)	L2c|LINE|L2	-4771	NM_198318	3276		NM_001536	ENSG00000126457	PRMT1	ANM1|HCP1|HRMT1L2|IR1B4	protein arginine methyltransferase 1	protein-coding
37600	chr11	19777071	19777750	+	0	NA	intron (NM_145117, intron 1 of 37)	intron (NM_145117, intron 1 of 37)	-17327	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	ncRNA
181123	chr5	37373051	37373580	+	0	NA	Intergenic	LTR64|LTR|ERV1	-2209	NM_004298	9631		NM_004298	ENSG00000113569	NUP155	ATFB15|N155	nucleoporin 155	protein-coding
212907	chr7	130898291	130899150	+	0	NA	intron (NR_110472, intron 2 of 3)	AluSx1|SINE|Alu	14590	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
81437	chr16	8863701	8864830	+	0	NA	intron (NM_001278260, intron 1 of 4)	intron (NM_001278260, intron 1 of 4)	-2455	NM_001278266	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
102028	chr17	74855921	74856200	+	0	NA	intron (NM_001278553, intron 1 of 11)	L3|LINE|CR1	3824	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
23911	chr1	235009901	235010180	+	0	NA	Intergenic	Intergenic	-46041	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
222186	chr8	133033351	133033450	+	0	NA	intron (NM_003235, intron 41 of 47)	intron (NM_003235, intron 41 of 47)	13181	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
53299	chr12	64460621	64460900	+	0	NA	intron (NM_013254, intron 3 of 20)	AluSc|SINE|Alu	8640	NM_013254	29110		NM_013254	ENSG00000183735	TBK1	FTDALS4|IIAE8|NAK|T2K	TANK binding kinase 1	protein-coding
122680	chr19	49884051	49884430	+	0	NA	intron (NM_024682, intron 10 of 16)	intron (NM_024682, intron 10 of 16)	-3935	NR_039905	100616314		NR_039905	ENSG00000284394	MIR4750	mir-4750	microRNA 4750	ncRNA
756	chr1	1501201	1502000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10562	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
117102	chr19	19191601	19193800	+	0	NA	promoter-TSS (NM_001278728)	promoter-TSS (NM_001278728)	-66	NM_001278728	8625		NM_003721	ENSG00000064490	RFXANK	ANKRA1|BLS|F14150_1|RFX-B	regulatory factor X associated ankyrin containing protein	protein-coding
147324	chr20	57856621	57857030	+	0	NA	Intergenic	Intergenic	-145289	NM_199171	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
160752	chr3	32567221	32567480	+	0	NA	intron (NM_016141, intron 2 of 12)	intron (NM_016141, intron 2 of 12)	3508	NM_016141	51143		NM_016141	ENSG00000144635	DYNC1LI1	DLC-A|DLIC-1|DNCLI1|LIC1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding
72558	chr15	34489251	34489550	+	0	NA	Intergenic	Intergenic	38971	NR_036050	100302160		NR_036050	ENSG00000221649	MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
104212	chr17	80543201	80543600	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1438	NM_001163034	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
58672	chr12	132537651	132537750	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	32294	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
118960	chr19	38845451	38846550	+	0	NA	exon (NM_001005335, exon 3 of 13).2	exon (NM_001005335, exon 3 of 13).2	3986	NM_001533	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
164164	chr3	56780821	56781280	+	0	NA	intron (NM_001289698, intron 2 of 10)	MLT1C|LTR|ERVL-MaLR	-5333	NM_001377413	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
151821	chr22	18404351	18404650	+	0	NA	Intergenic	CpG	-16884	NR_165629	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
104983	chr17	81995371	81995530	+	0	NA	intron (NR_045351, intron 4 of 14)	intron (NR_045351, intron 4 of 14)	17821	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
183790	chr5	82106321	82106580	+	0	NA	intron (NM_031482, intron 3 of 7)	intron (NM_031482, intron 3 of 7)	134427	NM_031482	83734		NM_031482	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
8704	chr1	42259421	42259880	+	0	NA	intron (NM_001198850, intron 4 of 12)	intron (NM_001198850, intron 4 of 12)	75305	NM_001198851	22887		NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
81955	chr16	11849901	11850100	+	0	NA	intron (NM_015659, intron 2 of 8)	AluSx1|SINE|Alu	1542	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
172134	chr4	1191371	1191530	+	0	NA	intron (NM_001199021, intron 1 of 7)	L1M4|LINE|L1	17512	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
35358	chr11	1243701	1243900	+	0	NA	exon (NM_002458, exon 31 of 49)	exon (NM_002458, exon 31 of 49)	5876	NR_157183	112577518		NR_157183	ENSG00000255177	MUC5B-AS1	-	MUC5B antisense RNA 1	ncRNA
237128	chrX	106611581	106613430	+	0	NA	exon (NM_001184782, exon 1 of 13)	exon (NM_001184782, exon 1 of 13)	527	NM_018015	55086		NM_018015	ENSG00000147231	RADX	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein-coding
183461	chr5	79241521	79241780	+	0	NA	intron (NM_152405, intron 1 of 10)	Tigger1|DNA|TcMar-Tigger	5519	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
174852	chr4	48653471	48654650	+	0	NA	intron (NM_015030, intron 3 of 63)	intron (NM_015030, intron 3 of 63)	126219	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
8536	chr1	41020771	41020930	+	0	NA	5' UTR (NM_001377532, exon 1 of 4)	5' UTR (NM_001377532, exon 1 of 4)	875	NM_001377532	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
11513	chr1	90964601	90965100	+	0	NA	intron (NM_201269, intron 2 of 5)	intron (NM_201269, intron 2 of 5)	56658	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
120104	chr19	42148151	42148700	+	0	NA	Intergenic	Intergenic	-14912	NR_036208	100422980		NR_036208	ENSG00000266226	MIR4323	-	microRNA 4323	ncRNA
213534	chr7	139087351	139087450	+	0	NA	intron (NM_020119, intron 2 of 12)	(GAGA)n|Simple_repeat|Simple_repeat	22320	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
141820	chr20	354251	355450	+	0	NA	TTS (NM_024958)	TTS (NM_024958)	6945	NM_001323685	80023		NM_024958	ENSG00000125841	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
110151	chr19	1621921	1622180	+	0	NA	intron (NM_003200, intron 10 of 18)	intron (NM_003200, intron 10 of 18)	-16588	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
103300	chr17	77869521	77870080	+	0	NA	Intergenic	MIRc|SINE|MIR	14287	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
238054	chrX	135523251	135523780	+	0	NA	intron (NM_001351601, intron 2 of 17)	intron (NM_001351601, intron 2 of 17)	-2841	NR_046740	100874118		NR_046740	ENSG00000225235	INTS6L-AS1	DDX26B-AS1	INTS6L antisense RNA 1	ncRNA
205670	chr7	23009571	23009930	+	0	NA	intron (NM_001363466, intron 1 of 11)	LTR84a|LTR|ERVL	4380	NM_032581	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
182158	chr5	56586321	56586580	+	0	NA	intron (NR_161255, intron 1 of 5)	intron (NR_161255, intron 1 of 5)	19806	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
234914	chrX	36470701	36470900	+	0	NA	Intergenic	L1PA2|LINE|L1	-30508	NR_110412	101928627		NR_110412	ENSG00000226484	LOC101928627	-	uncharacterized LOC101928627	ncRNA
101053	chr17	64815801	64816400	+	0	NA	intron (NR_024386, intron 4 of 10)	intron (NR_024386, intron 4 of 10)	6002	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
116329	chr19	17834271	17834830	+	0	NA	intron (NM_000215, intron 17 of 23)	intron (NM_000215, intron 17 of 23)	-13031	NM_001265587	3640		NM_005543	ENSG00000248099	INSL3	RLF|RLNL|ley-I-L	insulin like 3	protein-coding
105176	chr17	82275221	82275900	+	0	NA	Intergenic	Intergenic	-1810	NR_110578	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
54687	chr12	93413401	93413850	+	0	NA	intron (NM_003348, intron 1 of 3)	L2a|LINE|L2	28322	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
198704	chr6	108123571	108124080	+	0	NA	intron (NR_145458, intron 1 of 1)	intron (NR_145458, intron 1 of 1)	192	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
25946	chr10	11425721	11425980	+	0	NA	Intergenic	Tigger1a_Art|DNA|TcMar-Tigger	-81176	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
151327	chr21	45596471	45597400	+	0	NA	non-coding (NR_146912, exon 2 of 2)	non-coding (NR_146912, exon 2 of 2)	3281	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
24979	chr10	3066911	3067800	+	0	NA	promoter-TSS (NM_002627)	promoter-TSS (NM_002627)	-193	NM_001323069	5214		NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
31857	chr10	99937671	99937830	+	0	NA	intron (NR_024130, intron 2 of 4)	intron (NR_024130, intron 2 of 4)	-6843	NM_001318326	23268		NM_015221	ENSG00000107554	DNMBP	ARHGEF36|CTRCT48|TUBA	dynamin binding protein	protein-coding
114159	chr19	11346101	11347550	+	0	NA	promoter-TSS (NM_198536)	promoter-TSS (NM_198536)	306	NM_001080503	126075		NM_001080503	ENSG00000183401	CCDC159	-	coiled-coil domain containing 159	protein-coding
47164	chr12	775321	775800	+	0	NA	intron (NM_018979, intron 1 of 27)	AluJr|SINE|Alu	22637	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
159278	chr3	12965671	12966030	+	0	NA	intron (NM_001134382, intron 1 of 13)	L2a|LINE|L2	1880	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
37479	chr11	18380671	18380830	+	0	NA	Intergenic	LTR103_Mam|LTR|ERV1?	-7037	NR_036116	100423016		NR_036116	ENSG00000264603	MIR3159	-	microRNA 3159	ncRNA
238440	chrX	151392721	151392980	+	0	NA	Intergenic	Intergenic	-3745	NM_001363810	203547		NM_001017980	ENSG00000160131	VMA21	MEAX|XMEA	vacuolar ATPase assembly factor VMA21	protein-coding
203884	chr7	1480771	1481150	+	0	NA	intron (NM_001080453, intron 28 of 47)	intron (NM_001080453, intron 28 of 47)	-21490	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
146446	chr20	49676481	49677700	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	36788	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
151243	chr21	45289171	45289430	+	0	NA	intron (NR_026943, intron 1 of 2)	MER4D1|LTR|ERV1	1248	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
185257	chr5	123539201	123539400	+	0	NA	intron (NM_001364141, intron 2 of 14)	AluJb|SINE|Alu	-6117	NM_001270572	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
158942	chr3	10148071	10148430	+	0	NA	intron (NM_000551, intron 2 of 2)	intron (NM_000551, intron 2 of 2)	6472	NM_198156	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
205124	chr7	6965021	6965530	+	0	NA	Intergenic	MER91C|DNA|hAT-Tip100	101770	NR_037454	100500886		NR_037454	ENSG00000266287	MIR3683	-	microRNA 3683	ncRNA
87192	chr16	69395971	69396680	+	0	NA	Intergenic	Intergenic	-10318	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
144744	chr20	36593951	36594250	+	0	NA	TTS (NM_021809)	TTS (NM_021809)	-11679	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
181770	chr5	50740021	50740480	+	0	NA	intron (NM_024615, intron 2 of 25)	L2b|LINE|L2	72836	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
10352	chr1	64931201	64931680	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	35109	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
206873	chr7	37641501	37641700	+	0	NA	Intergenic	L1PA11|LINE|L1	-42166	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
46017	chr11	122202971	122203130	+	0	NA	promoter-TSS (NR_137182)	promoter-TSS (NR_137182)	59	NR_137182	399959		NR_024430	ENSG00000255248	MIR100HG	AGD1|linc-NeD125|lncRNA-N2	mir-100-let-7a-2-mir-125b-1 cluster host gene	ncRNA
36089	chr11	3012301	3012700	+	0	NA	intron (NR_165428, intron 17 of 22)	intron (NR_165428, intron 17 of 22)	-16894	NR_046580	100852407		NR_046580	ENSG00000247473	CARS1-AS1	CARS-AS1	CARS1 antisense RNA 1	ncRNA
133813	chr2	127813271	127813430	+	0	NA	Intergenic	Intergenic	-2163	NM_001006622	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
186548	chr5	138457051	138457550	+	0	NA	Intergenic	Intergenic	-8179	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
127769	chr2	44166051	44166680	+	0	NA	Intergenic	THE1D-int|LTR|ERVL-MaLR	-2438	NM_177969	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
191252	chr6	5994251	5995030	+	0	NA	Intergenic	Intergenic	9404	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
20079	chr1	186307371	186308380	+	0	NA	exon (NM_001127709, exon 5 of 11)	exon (NM_001127709, exon 5 of 11)	11596	NM_005807	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
78338	chr15	91020401	91020950	+	0	NA	intron (NM_018668, intron 1 of 22)	AluSx|SINE|Alu	1919	NM_018668	26276		NM_018668	ENSG00000184056	VPS33B	KDIDAR|PFIC12	VPS33B late endosome and lysosome associated	protein-coding
95942	chr17	38966301	38966500	+	0	NA	intron (NM_001008777, intron 1 of 10)	AluSg|SINE|Alu	1003	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
46834	chr11	131694871	131695050	+	0	NA	intron (NM_001352006, intron 2 of 9)	intron (NM_001352006, intron 2 of 9)	-31404	NR_126159	101929637		NM_207432		NTM-AS1	C11orf39	NTM antisense RNA 1	ncRNA
223862	chr9	113321	115030	+	0	NA	Intergenic	CpG	4242	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
124716	chr2	3608951	3609550	+	0	NA	intron (NM_001255989, intron 1 of 3)	intron (NM_001255989, intron 1 of 3)	3198	NM_001255986	78989		NM_024027	ENSG00000118004	COLEC11	3MC2|CL-11|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
162501	chr3	48574571	48575130	+	0	NA	exon (NM_000094, exon 77 of 119)	exon (NM_000094, exon 77 of 119)	4127	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
3666	chr1	16439921	16441950	+	0	NA	intron (NM_018090, intron 1 of 7)	CpG	211	NM_018090	55707		NM_018090	ENSG00000157191	NECAP2	-	NECAP endocytosis associated 2	protein-coding
195688	chr6	38636201	38636700	+	0	NA	intron (NM_052893, intron 1 of 11)	L2b|LINE|L2	3479	NM_052893	114781		NM_052893	ENSG00000183826	BTBD9	dJ322I12.1	BTB domain containing 9	protein-coding
218112	chr8	41489671	41491500	+	0	NA	promoter-TSS (NM_001362980)	promoter-TSS (NM_001362980)	3	NM_001002296	51125		NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
71022	chr14	104769851	104770250	+	0	NA	3' UTR (NM_005163, exon 14 of 14)	3' UTR (NM_005163, exon 14 of 14)	16903	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
177809	chr4	123423301	123423700	+	0	NA	Intergenic	Intergenic	23960	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
12104	chr1	100035651	100036430	+	0	NA	TTS (NM_012243)	TTS (NM_012243)	-2055	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
198603	chr6	107719071	107719230	+	0	NA	intron (NM_001286409, intron 2 of 3)	intron (NM_001286409, intron 2 of 3)	13000	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
221315	chr8	123037401	123038930	+	0	NA	intron (NM_024295, intron 1 of 7)	intron (NM_024295, intron 1 of 7)	4137	NM_024295	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
67244	chr14	68974521	68974980	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	4552	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
96880	chr17	42097651	42098950	+	0	NA	intron (NM_001378270, intron 1 of 8)	CpG	173	NM_001378270	201181		NM_001013624	ENSG00000187595	ZNF385C	-	zinc finger protein 385C	protein-coding
197398	chr6	73507651	73508200	+	0	NA	3' UTR (NM_001123226, exon 13 of 13)	3' UTR (NM_001123226, exon 13 of 13)	10513	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
89676	chr16	89377151	89377900	+	0	NA	intron (NR_045839, intron 2 of 9)	Tigger2|DNA|TcMar-Tigger	-53393	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
28030	chr10	43225471	43226530	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	3739	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
55725	chr12	108304001	108304400	+	0	NA	intron (NM_001142344, intron 1 of 2)	LTR33|LTR|ERVL	16462	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
144643	chr20	35991221	35991730	+	0	NA	intron (NM_001207076, intron 7 of 10)	intron (NM_001207076, intron 7 of 10)	22885	NM_001365709	140894		NM_080834	ENSG00000149646	CNBD2	C20orf152|CNMPD1	cyclic nucleotide binding domain containing 2	protein-coding
59459	chr13	26010171	26010530	+	0	NA	intron (NM_016529, intron 35 of 36)	intron (NM_016529, intron 35 of 36)	41666	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
228385	chr9	99122001	99122200	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	16987	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233585	chrX	311551	311650	+	0	NA	exon (NM_012227, exon 7 of 10)	exon (NM_012227, exon 7 of 10)	7219	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
86658	chr16	67465601	67466600	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	15057	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
130750	chr2	86808201	86809100	+	0	NA	promoter-TSS (NR_168479)	promoter-TSS (NR_168479)	-254	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
195415	chr6	36873971	36875500	+	0	NA	promoter-TSS (NM_016059)	promoter-TSS (NM_016059)	68	NM_016059	51645		NM_016059	ENSG00000137168	PPIL1	CGI-124|CYPL1|PCH14|PPIase|hCyPX	peptidylprolyl isomerase like 1	protein-coding
211182	chr7	102595001	102595400	+	0	NA	intron (NM_001079877, intron 11 of 19)	intron (NM_001079877, intron 11 of 19)	21556	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
126414	chr2	27683271	27684150	+	0	NA	intron (NM_018158, intron 9 of 13)	intron (NM_018158, intron 9 of 13)	-19870	NM_001282730	9913		NM_014860	ENSG00000119760	SUPT7L	SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H	SPT7 like, STAGA complex subunit gamma	protein-coding
194013	chr6	31806201	31807430	+	0	NA	5' UTR (NM_021177, exon 1 of 5).3	5' UTR (NM_021177, exon 1 of 5).3	151	NM_021177	57819		NM_021177	ENSG00000204392	LSM2	C6orf28|G7B|YBL026W|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
198953	chr6	110859171	110859550	+	0	NA	intron (NM_001287215, intron 1 of 8)	intron (NM_001287215, intron 1 of 8)	10814	NR_145728	109616968		NR_145728	ENSG00000212587	SNORA40C	-	small nucleolar RNA, H/ACA box 40C	snoRNA
217426	chr8	28404001	28404550	+	0	NA	Intergenic	MER66B|LTR|ERV1	-17815	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
39240	chr11	57663121	57663580	+	0	NA	Intergenic	AluSq|SINE|Alu	-4764	NM_015457	25921		NM_015457	ENSG00000156599	ZDHHC5	DHHC5|ZNF375	zinc finger DHHC-type palmitoyltransferase 5	protein-coding
83002	chr16	22193971	22194230	+	0	NA	Intergenic	L2a|LINE|L2	-12178	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
105149	chr17	82249051	82249150	+	0	NA	intron (NM_139062, intron 7 of 9)	intron (NM_139062, intron 7 of 9)	12432	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
161115	chr3	38243301	38243500	+	0	NA	intron (NM_005109, intron 12 of 17)	intron (NM_005109, intron 12 of 17)	-22412	NM_004256	9390		NM_004256	ENSG00000172940	SLC22A13	OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3	solute carrier family 22 member 13	protein-coding
235147	chrX	41104971	41105550	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	19815	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
80117	chr16	2032221	2032480	+	0	NA	promoter-TSS (NM_001252073)	promoter-TSS (NM_001252073)	-944	NM_001252073	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
120	chr1	493771	493930	+	0	NA	non-coding (NR_028322, exon 3 of 3)	non-coding (NR_028322, exon 3 of 3)	1595	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
183338	chr5	76738521	76739850	+	0	NA	Intergenic	Intergenic	23059	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
18416	chr1	161447051	161447900	+	0	NA	Intergenic	CpG	-57982	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
164932	chr3	71209421	71209680	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	35527	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
79563	chr16	979251	979700	+	0	NA	non-coding (NR_164337, exon 1 of 2)	non-coding (NR_164337, exon 1 of 2)	2138	NR_164339	115804232		NR_036442	ENSG00000260807	CEROX1	-	cytoplasmic endogenous regulator of oxidative phosphorylation 1	ncRNA
190817	chr6	1424301	1424530	+	0	NA	Intergenic	Intergenic	-34004	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
172962	chr4	3815101	3815500	+	0	NA	Intergenic	(ACTCT)n|Simple_repeat|Simple_repeat	48915	NM_000683	152		NM_000683	ENSG00000184160	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
231965	chr9	133153471	133153630	+	0	NA	3' UTR (NM_001288573, exon 7 of 7)	3' UTR (NM_001288573, exon 7 of 7)	-4340	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
105092	chr17	82121621	82121880	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-23514	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
226430	chr9	71096551	71096650	+	0	NA	intron (NM_001366141, intron 1 of 24)	(CT)n|Simple_repeat|Simple_repeat	25021	NM_001366146	80036		NM_020952	ENSG00000083067	TRPM3	CTRCT50|GON-2|LTRPC3|MLSN2|NEDFSS	transient receptor potential cation channel subfamily M member 3	protein-coding
194319	chr6	32835151	32835550	+	0	NA	exon (NM_001290043, exon 5 of 12).2	exon (NM_001290043, exon 5 of 12).2	3389	NM_001290043	6891		NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
173354	chr4	7831201	7832230	+	0	NA	intron (NM_001371091, intron 7 of 17)	intron (NM_001371091, intron 7 of 17)	40593	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
202936	chr6	160519171	160520900	+	0	NA	Intergenic	Intergenic	-8911	NR_028093	80350		NM_024492	ENSG00000290613	LPAL2	APOA2|APOAL|APOARGC|apo(a)rg-C	lipoprotein(a) like 2 (pseudogene)	pseudo
55917	chr12	109775221	109775600	+	0	NA	Intergenic	Intergenic	-1923	NR_026661	84983		NM_032897	ENSG00000255650	FAM222A-AS1	-	FAM222A antisense RNA 1	ncRNA
186989	chr5	139709201	139710100	+	0	NA	Intergenic	CpG	34207	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
127835	chr2	45002051	45002150	+	0	NA	Intergenic	Intergenic	7352	NM_016932	10736		NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
168185	chr3	140943871	140944230	+	0	NA	intron (NM_018155, intron 1 of 6)	intron (NM_018155, intron 1 of 6)	2214	NM_001104647	55186		NM_018155	ENSG00000114120	SLC25A36	HHF8|PNC2	solute carrier family 25 member 36	protein-coding
5549	chr1	25874851	25876200	+	0	NA	5' UTR (NM_178422, exon 1 of 3)	5' UTR (NM_178422, exon 1 of 3)	183	NM_178422	164091		NM_178422	ENSG00000182749	PAQR7	MPRA|PGLP|mSR	progestin and adipoQ receptor family member 7	protein-coding
197366	chr6	73470171	73470330	+	0	NA	intron (NM_133645, intron 3 of 12)	AluSc8|SINE|Alu	8513	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
21297	chr1	204464171	204464700	+	0	NA	intron (NM_001377335, intron 6 of 35)	intron (NM_001377335, intron 6 of 35)	30370	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
40448	chr11	64207401	64209830	+	0	NA	intron (NM_001382363, intron 1 of 13)	intron (NM_001382363, intron 1 of 13)	909	NM_001382364	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
212878	chr7	130872451	130873200	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	3985	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
68511	chr14	88558671	88559030	+	0	NA	Intergenic	Intergenic	-3843	NM_007039	11099		NM_007039	ENSG00000070778	PTPN21	PTPD1|PTPRL10	protein tyrosine phosphatase non-receptor type 21	protein-coding
157158	chr22	42887801	42888400	+	0	NA	intron (NM_001349972, intron 5 of 10)	intron (NM_001349972, intron 5 of 10)	-30827	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
151570	chr21	46603351	46603450	+	0	NA	intron (NM_006272, intron 1 of 2)	intron (NM_006272, intron 1 of 2)	1682	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
121285	chr19	46721151	46721930	+	0	NA	intron (NM_001039877, intron 16 of 17)	intron (NM_001039877, intron 16 of 17)	-4413	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
124133	chr19	55688101	55689080	+	0	NA	intron (NM_001321263, intron 3 of 10)	intron (NM_001321263, intron 3 of 10)	11965	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
34517	chr10	132627551	132628500	+	0	NA	intron (NM_005539, intron 2 of 15)	intron (NM_005539, intron 2 of 15)	-53250	NM_001321042	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
215775	chr8	2129271	2129430	+	0	NA	intron (NM_003970, intron 32 of 36).2	intron (NM_003970, intron 32 of 36).2	52761	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
44589	chr11	108278551	108278850	+	0	NA	intron (NM_000051, intron 22 of 62)	MSTB1|LTR|ERVL-MaLR	55171	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
213086	chr7	131100301	131102300	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	5730	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
189964	chr5	177434251	177435580	+	0	NA	exon (NM_002082, exon 10 of 16)	exon (NM_002082, exon 10 of 16)	8229	NM_002082	2870		NM_002082	ENSG00000198055	GRK6	GPRK6	G protein-coupled receptor kinase 6	protein-coding
156748	chr22	41828951	41829550	+	0	NA	non-coding (NR_157279, exon 2 of 2)	non-coding (NR_157279, exon 2 of 2)	-3855	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
2759	chr1	10688721	10688980	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	107796	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
158024	chr22	49916321	49916980	+	0	NA	intron (NM_024105, intron 1 of 9)	AluJr|SINE|Alu	1788	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
160880	chr3	33645001	33646030	+	0	NA	promoter-TSS (NM_001375716)	promoter-TSS (NM_001375716)	-41	NM_001375718	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
65846	chr14	54979151	54979250	+	0	NA	intron (NM_007086, intron 16 of 25)	AluJr|SINE|Alu	47899	NM_007086	11169		NM_007086	ENSG00000198554	WDHD1	AND-1|AND1|CHTF4|CTF4	WD repeat and HMG-box DNA binding protein 1	protein-coding
64879	chr14	35341251	35342100	+	0	NA	Intergenic	Intergenic	49293	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
42899	chr11	73375421	73377750	+	0	NA	promoter-TSS (NM_032871)	promoter-TSS (NM_032871)	-83	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
60200	chr13	40432221	40432480	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	48656	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
192530	chr6	25053621	25054530	+	0	NA	Intergenic	Intergenic	-11787	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
128215	chr2	54012651	54013280	+	0	NA	intron (NM_001320587, intron 2 of 5)	L2a|LINE|L2	41852	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
135997	chr2	172285551	172285880	+	0	NA	Intergenic	Intergenic	-141621	NM_001316306	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
205999	chr7	26198211	26198850	+	0	NA	intron (NM_031243, intron 1 of 11)	intron (NM_031243, intron 1 of 11)	2216	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
231851	chr9	132824051	132824350	+	0	NA	intron (NM_001371771, intron 8 of 12)	intron (NM_001371771, intron 8 of 12)	54084	NM_001317958	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
45433	chr11	118408771	118409130	+	0	NA	intron (NR_033759, intron 3 of 3)	(AT)n|Simple_repeat|Simple_repeat	7344	NM_006476	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
141571	chr2	241562901	241563100	+	0	NA	intron (NM_032515, intron 3 of 4)	MLT1G1|LTR|ERVL-MaLR	-3857	NR_033346	100379249		NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	ncRNA
174780	chr4	47912201	47912600	+	0	NA	intron (NM_152995, intron 2 of 22)	intron (NM_152995, intron 2 of 22)	-1827	NR_125879	101927157		NR_125879		LOC101927157	-	uncharacterized LOC101927157	ncRNA
169433	chr3	161395021	161395600	+	0	NA	Intergenic	MER104|DNA|TcMar-Tc2	-22360	NM_001320679	165679		NM_145035	ENSG00000196542	SPTSSB	ADMP|C3orf57|SSSPTB	serine palmitoyltransferase small subunit B	protein-coding
113664	chr19	10385551	10385650	+	0	NA	Intergenic	AluJb|SINE|Alu	-5028	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
31074	chr10	89018071	89018550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-25335	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
52688	chr12	56486651	56486950	+	0	NA	intron (NM_013267, intron 1 of 17)	AluSx|SINE|Alu	1361	NM_013267	27165		NM_013267	ENSG00000135423	GLS2	GA|GLS|LGA|hLGA	glutaminase 2	protein-coding
119779	chr19	41311421	41311680	+	0	NA	intron (NM_001346100, intron 1 of 4)	AluSz6|SINE|Alu	1073	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
231353	chr9	130444371	130445050	+	0	NA	promoter-TSS (NM_054012)	promoter-TSS (NM_054012)	3	NM_000050	445		NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
227386	chr9	89510521	89511100	+	0	NA	Intergenic	HAL1|LINE|L1	-12697	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
116027	chr19	17172001	17172200	+	0	NA	intron (NM_004145, intron 11 of 39)	intron (NM_004145, intron 11 of 39)	-43257	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
108354	chr18	67451951	67452230	+	0	NA	Intergenic	Intergenic	-64456	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
233000	chr9	137004201	137004830	+	0	NA	Intergenic	LTR13|LTR|ERVK	-7947	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
47985	chr12	6906071	6906580	+	0	NA	intron (NM_006992, intron 3 of 6)	intron (NM_006992, intron 3 of 6)	1503	NM_201650	10233		NM_006992	ENSG00000010626	LRRC23	LRPB7	leucine rich repeat containing 23	protein-coding
153138	chr22	23762971	23764350	+	0	NA	intron (NM_001331041, intron 1 of 5)	MER5A|DNA|hAT-Charlie	670	NM_001376903	150248		NM_182520	ENSG00000169314	C22orf15	N27C7-3	chromosome 22 open reading frame 15	protein-coding
206908	chr7	38105821	38106210	+	0	NA	Intergenic	Intergenic	-72230	NM_001363347	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
112302	chr19	5873971	5874130	+	0	NA	Intergenic	Intergenic	-3510	NM_002034	2527		NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding
15436	chr1	150291771	150292130	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-1892	NM_018997	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
20680	chr1	200473401	200474600	+	0	NA	Intergenic	Intergenic	-63964	NM_001281293	23528		NM_012482	ENSG00000162702	ZNF281	GZP1|ZBP-99|ZBP99|ZNP-99	zinc finger protein 281	protein-coding
64966	chr14	36505551	36505850	+	0	NA	intron (NR_161364, intron 1 of 4)	CpG	7835	NR_161363	253970		NM_001101341	ENSG00000257520	SFTA3	NANCI|PAHRF|SFTPH|SP-H|SPH	surfactant associated 3	ncRNA
225696	chr9	36571671	36571830	+	0	NA	Intergenic	AluSz|SINE|Alu	-1112	NR_046337	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
123961	chr19	55404551	55404850	+	0	NA	intron (NM_014501, intron 2 of 3)	AluJo|SINE|Alu	-2043	NR_145781	109623451		NR_145781		SNORD157	-	small nucleolar RNA, C/D box 157	snoRNA
195297	chr6	36538351	36538730	+	0	NA	intron (NM_007271, intron 2 of 13)	L1ME2z|LINE|L1	8939	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
125190	chr2	10125601	10126030	+	0	NA	intron (NR_164157, intron 5 of 12)	intron (NR_164157, intron 5 of 12)	3076	NM_001034	6241		NM_001034	ENSG00000171848	RRM2	C2orf48|R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
170052	chr3	182797951	182798500	+	0	NA	intron (NM_014616, intron 1 of 29)	L2c|LINE|L2	4721	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
109995	chr19	1420801	1421130	+	0	NA	intron (NM_001352033, intron 4 of 11)	intron (NM_001352033, intron 4 of 11)	13379	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
58937	chr13	19769001	19769500	+	0	NA	intron (NM_001354909, intron 2 of 8)	AluSp|SINE|Alu	13695	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
161422	chr3	41424601	41425000	+	0	NA	intron (NM_017886, intron 34 of 36)	L1PA10|LINE|L1	225295	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
177280	chr4	109552271	109552430	+	0	NA	Intergenic	L2a|LINE|L2	-7896	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
206658	chr7	36284701	36285150	+	0	NA	intron (NM_030636, intron 5 of 7)	intron (NM_030636, intron 5 of 7)	82315	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
40921	chr11	65215001	65215200	+	0	NA	intron (NR_033396, intron 2 of 9)	AluJo|SINE|Alu	1260	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
209145	chr7	75144901	75145300	+	0	NA	intron (NM_001003795, intron 15 of 15)	MamRep38|DNA|hAT	26898	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
233281	chr9	137309251	137310130	+	0	NA	exon (NM_017820, exon 20 of 22)	exon (NM_017820, exon 20 of 22)	-7419	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
58455	chr12	132086401	132087200	+	0	NA	intron (NR_003290, intron 2 of 9)	intron (NR_003290, intron 2 of 9)	2517	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
232328	chr9	135197301	135197650	+	0	NA	Intergenic	Intergenic	15866	NR_046107	401557		NR_046107		LOC401557	-	uncharacterized LOC401557	ncRNA
188993	chr5	167799021	167799100	+	0	NA	intron (NM_001080428, intron 1 of 24)	intron (NM_001080428, intron 1 of 24)	44131	NM_001080428	57451		NM_001080428	ENSG00000145934	TENM2	ODZ2|TEN-M2|TEN2|TNM2|ten-2	teneurin transmembrane protein 2	protein-coding
226095	chr9	62832021	62832280	+	0	NA	Intergenic	L1PA17|LINE|L1	6196	NR_135128	100132249		NR_135128		LOC100132249	-	uncharacterized LOC100132249	ncRNA
65531	chr14	51915821	51916080	+	0	NA	TTS (NR_126331)	TTS (NR_126331)	2621	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
171830	chr4	680901	682480	+	0	NA	TTS (NM_001378061)	TTS (NM_001378061)	3768	NM_002477	4636		NM_002477	ENSG00000215375	MYL5	MYLC2	myosin light chain 5	protein-coding
187358	chr5	141704151	141704250	+	0	NA	Intergenic	L2b|LINE|L2	-21970	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
61539	chr13	60370251	60370630	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-26017	NM_001146071	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
113763	chr19	10513251	10513350	+	0	NA	3' UTR (NM_001166215, exon 2 of 2)	3' UTR (NM_001166215, exon 2 of 2)	4147	NM_030760	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
225940	chr9	40993851	40994400	+	0	NA	intron (NR_034006, intron 2 of 5)	L1MB7|LINE|L1	1864	NR_034006	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
143413	chr20	29493071	29493230	+	0	NA	intron (NR_146067, intron 2 of 6)	L1M4|LINE|L1	4184	NR_146067	102723390		NR_146067		FRG1EP	-	FSHD region gene 1 family member E, pseudogene	pseudo
61768	chr13	74305971	74306800	+	0	NA	Intergenic	Intergenic	74941	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
129008	chr2	64839651	64840180	+	0	NA	Intergenic	Kanga1c|DNA|TcMar-Tc2	23716	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
177001	chr4	105443521	105443780	+	0	NA	intron (NM_176869, intron 5 of 11)	(CT)n|Simple_repeat|Simple_repeat	30412	NM_176869	27068		NM_006903	ENSG00000138777	PPA2	HSPC124|SCFAI|SCFI|SID6-306	inorganic pyrophosphatase 2	protein-coding
60066	chr13	33543971	33544680	+	0	NA	intron (NM_001243476, intron 3 of 17)	intron (NM_001243476, intron 3 of 17)	132469	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
142124	chr20	2692101	2692800	+	0	NA	promoter-TSS (NM_001110514)	promoter-TSS (NM_001110514)	-330	NR_138537	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
53647	chr12	68288471	68288630	+	0	NA	Intergenic	L1PA5|LINE|L1	-34946	NM_020525	50616		NM_020525	ENSG00000127318	IL22	IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18	interleukin 22	protein-coding
36670	chr11	8206471	8206830	+	0	NA	Intergenic	Intergenic	-37625	NM_001346693	79608		NM_024557	ENSG00000166405	RIC3	AYST720|PRO1385|RIC-3	RIC3 acetylcholine receptor chaperone	protein-coding
48413	chr12	9668171	9668330	+	0	NA	Intergenic	L1MEg1|LINE|L1	-1463	NM_001197318	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
140995	chr2	238098171	238099300	+	0	NA	non-coding (NR_037904, exon 19 of 19)	non-coding (NR_037904, exon 19 of 19)	-1605	NM_194312	339768		NM_194312	ENSG00000144488	ESPNL	-	espin like	protein-coding
123855	chr19	55249651	55250150	+	0	NA	intron (NM_014931, intron 1 of 23)	intron (NM_014931, intron 1 of 23)	-4650	NR_106861	102466739		NR_106861	ENSG00000278264	MIR6803	hsa-mir-6803	microRNA 6803	ncRNA
19867	chr1	183476071	183476530	+	0	NA	intron (NM_001174061, intron 1 of 21)	intron (NM_001174061, intron 1 of 21)	3801	NM_001375585	9887		NM_014837	ENSG00000116698	SMG7	C1orf16|EST1C|SGA56M	SMG7 nonsense mediated mRNA decay factor	protein-coding
234548	chrX	19716021	19716480	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	-45251	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
216224	chr8	12115571	12116150	+	0	NA	promoter-TSS (NR_027425)	promoter-TSS (NR_027425)	78	NR_027425	100132923		NR_027425		FAM66D	-	family with sequence similarity 66 member D	ncRNA
181292	chr5	39714101	39714330	+	0	NA	Intergenic	Intergenic	193784	NR_104632	101926940		NR_104632	ENSG00000271334	LINC02104	-	long intergenic non-protein coding RNA 2104	ncRNA
222639	chr8	141127971	141129400	+	0	NA	promoter-TSS (NM_001362798)	promoter-TSS (NM_001362798)	96	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
136846	chr2	185738951	185739150	+	0	NA	promoter-TSS (NR_110215)	promoter-TSS (NR_110215)	43	NR_110214	101927196		NR_110214	ENSG00000226747	FSIP2-AS2	-	FSIP2 antisense RNA 2	ncRNA
177334	chr4	109814851	109816580	+	0	NA	promoter-TSS (NM_018983)	promoter-TSS (NM_018983)	-47	NM_018983	54433		NM_018983	ENSG00000109534	GAR1	NOLA1	GAR1 ribonucleoprotein	protein-coding
162205	chr3	47012551	47013380	+	0	NA	non-coding (NR_024046, exon 4 of 4)	non-coding (NR_024046, exon 4 of 4)	1423	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
44021	chr11	94972951	94974330	+	0	NA	promoter-TSS (NM_016403)	promoter-TSS (NM_016403)	-28	NM_001363372	51503		NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
86246	chr16	58249601	58250850	+	0	NA	intron (NM_001142302, intron 1 of 7)	intron (NM_001142302, intron 1 of 7)	289	NM_001142302	29070		NM_014157	ENSG00000103021	CFAP263	CCDC113|HSPC065	cilia and flagella associated protein 263	protein-coding
36521	chr11	6475171	6476900	+	0	NA	TTS (NM_001370409)	TTS (NM_001370409)	-1576	NM_001248006	10612		NM_006458	ENSG00000110171	TRIM3	BERP|HAC1|RNF22|RNF97	tripartite motif containing 3	protein-coding
124269	chr19	57770901	57771100	+	0	NA	intron (NM_001077426, intron 1 of 1)	AluJb|SINE|Alu	1324	NM_017652	54807		NM_017652	ENSG00000083828	ZNF586	-	zinc finger protein 586	protein-coding
127216	chr2	38595751	38595850	+	0	NA	intron (NM_138394, intron 1 of 12)	AluSx1|SINE|Alu	7128	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
94862	chr17	31512471	31513200	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	-22048	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
93612	chr17	19148651	19148950	+	0	NA	intron (NM_001353418, intron 3 of 3)	AluYk3|SINE|Alu	13824	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
87443	chr16	70746971	70747930	+	0	NA	intron (NM_001351157, intron 11 of 17)	L1MB7|LINE|L1	-7645	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
212903	chr7	130893001	130893250	+	0	NA	intron (NR_110472, intron 2 of 3)	AluSx1|SINE|Alu	-15586	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
17852	chr1	159922801	159924900	+	0	NA	promoter-TSS (NM_001277224)	promoter-TSS (NM_001277224)	-116	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
181127	chr5	37672071	37672480	+	0	NA	intron (NM_018034, intron 10 of 17)	LTR5B|LTR|ERVK	162547	NM_001278098	2668		NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
131952	chr2	99350271	99350430	+	0	NA	intron (NM_015904, intron 1 of 23)	L1MA6|LINE|L1	12961	NM_015904	9669		NM_015904	ENSG00000158417	EIF5B	IF2	eukaryotic translation initiation factor 5B	protein-coding
138253	chr2	203241251	203242080	+	0	NA	intron (NM_001371705, intron 1 of 9)	AluJr4|SINE|Alu	2324	NM_001371698	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
154675	chr22	36362901	36363780	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	24627	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
82530	chr16	18344701	18344900	+	0	NA	promoter-TSS (NR_106766).4	promoter-TSS (NR_106766).4	-721	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
43549	chr11	82955851	82956650	+	0	NA	Intergenic	L1PA6|LINE|L1	-54510	NM_001319214	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
201254	chr6	144104621	144105180	+	0	NA	Intergenic	Intergenic	-9327	NM_031287	83443		NM_031287	ENSG00000169976	SF3B5	SF3b10|Ysf3	splicing factor 3b subunit 5	protein-coding
55475	chr12	104695221	104696130	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	104042	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
220635	chr8	100947001	100947280	+	0	NA	intron (NM_001135702, intron 2 of 5)	AluYm1|SINE|Alu	3431	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
134082	chr2	131521501	131522000	+	0	NA	TTS (NR_026922)	TTS (NR_026922)	-5925	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
212653	chr7	129516321	129516580	+	0	NA	Intergenic	AluSz|SINE|Alu	13919	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
142999	chr20	20363721	20363980	+	0	NA	Intergenic	CpG	-4254	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
55323	chr12	103934101	103934630	+	0	NA	intron (NM_003299, intron 5 of 17)	MIR3|SINE|MIR	3940	NR_037425	100500842		NR_037425	ENSG00000284503	MIR3652	-	microRNA 3652	ncRNA
187671	chr5	143218551	143219050	+	0	NA	intron (NR_146198, intron 22 of 22)	intron (NR_146198, intron 22 of 22)	26300	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
131602	chr2	96875551	96875800	+	0	NA	TTS (NM_001122646)	TTS (NM_001122646)	-5595	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
58306	chr12	130873851	130874500	+	0	NA	intron (NM_001300796, intron 3 of 5)	intron (NM_001300796, intron 3 of 5)	2109	NM_006325	5901		NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
128497	chr2	59301871	59302030	+	0	NA	Intergenic	Intergenic	84242	NR_110219	101927285		NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
160209	chr3	23916471	23918180	+	0	NA	promoter-TSS (NM_001377368)	promoter-TSS (NM_001377368)	193	NM_001253383	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
23616	chr1	230208601	230209650	+	0	NA	intron (NM_001291866, intron 3 of 15)	intron (NM_001291866, intron 3 of 15)	141887	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
33707	chr10	121516521	121516780	+	0	NA	intron (NM_001144914, intron 5 of 14)	intron (NM_001144914, intron 5 of 14)	14664	NM_001320654	2263		NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
24866	chr10	744251	744350	+	0	NA	Intergenic	Intergenic	-54632	NM_014974	22982		NM_014974	ENSG00000151240	DIP2C	KIAA0934	disco interacting protein 2 homolog C	protein-coding
32518	chr10	102785871	102786130	+	0	NA	intron (NM_017787, intron 1 of 3)	intron (NM_017787, intron 1 of 3)	9779	NM_017787	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
9921	chr1	54464701	54464900	+	0	NA	Intergenic	Intergenic	-58406	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
231059	chr9	129635571	129636300	+	0	NA	non-coding (NR_104596, exon 4 of 4)	non-coding (NR_104596, exon 4 of 4)	6216	NM_177999	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
195122	chr6	35667451	35668280	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluSx1|SINE|Alu	-3076	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
101057	chr17	64830621	64830900	+	0	NA	intron (NR_024386, intron 1 of 10)	MER4D|LTR|ERV1	6424	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
198365	chr6	105452871	105454100	+	0	NA	Intergenic	Intergenic	-50403	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
141275	chr2	240027771	240027930	+	0	NA	Intergenic	L1MD|LINE|L1	-2448	NM_001322019	4705		NM_004544	ENSG00000130414	NDUFA10	CI-42KD|CI-42k|MC1DN22	NADH:ubiquinone oxidoreductase subunit A10	protein-coding
167186	chr3	128151571	128152180	+	0	NA	intron (NM_001319086, intron 1 of 9)	intron (NM_001319086, intron 1 of 9)	-1606	NM_021937	60678		NM_021937	ENSG00000132394	EEFSEC	EFSEC|SELB	eukaryotic elongation factor, selenocysteine-tRNA specific	protein-coding
128836	chr2	63588001	63589580	+	0	NA	promoter-TSS (NM_001199111)	promoter-TSS (NM_001199111)	-173	NM_005917	4190		NM_005917	ENSG00000014641	MDH1	DEE88|EIEE88|HEL-S-32|KAR|MDH-s|MDHA|MGC:1375|MOR2	malate dehydrogenase 1	protein-coding
180972	chr5	35777421	35778150	+	0	NA	intron (NM_024867, intron 29 of 36)	intron (NM_024867, intron 29 of 36)	-79106	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
116249	chr19	17601551	17602450	+	0	NA	3' UTR (NM_001080421, exon 42 of 42)	3' UTR (NM_001080421, exon 42 of 42)	46351	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
37729	chr11	31487871	31488130	+	0	NA	intron (NM_144981, intron 1 of 6)	intron (NM_144981, intron 1 of 6)	21622	NM_144981	196294		NM_144981	ENSG00000148950	IMMP1L	IMMP1|IMP1|IMP1-LIKE	inner mitochondrial membrane peptidase subunit 1	protein-coding
206371	chr7	30597771	30597930	+	0	NA	intron (NM_002047, intron 1 of 16)	intron (NM_002047, intron 1 of 16)	2972	NM_002047	2617		NM_002047	ENSG00000106105	GARS1	CMT2D|DSMAV|GARS|GlyRS|HMN5|HMN5A|HMND5|SMAD1|SMAJI	glycyl-tRNA synthetase 1	protein-coding
27575	chr10	32366771	32367130	+	0	NA	intron (NR_104163, intron 1 of 1)	intron (NR_104163, intron 1 of 1)	11819	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
107441	chr18	46250071	46251230	+	0	NA	intron (NM_145055, intron 3 of 4)	L2b|LINE|L2	76616	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
102512	chr17	75782751	75783800	+	0	NA	Intergenic	MIR3|SINE|MIR	1332	NR_039892	100616282		NR_039892	ENSG00000283853	MIR4738	-	microRNA 4738	ncRNA
133311	chr2	113755751	113757450	+	0	NA	promoter-TSS (NM_001330316)	promoter-TSS (NM_001330316)	42	NM_001330316	80255		NM_025181	ENSG00000115084	SLC35F5	-	solute carrier family 35 member F5	protein-coding
128511	chr2	60551551	60552880	+	0	NA	intron (NM_022893, intron 1 of 3)	intron (NM_022893, intron 1 of 3)	1283	NM_001363864	53335		NM_018014	ENSG00000119866	BCL11A	CTIP1|DILOS|EVI9|HBFQTL5|SMARCM1|ZNF856	BCL11 transcription factor A	protein-coding
75318	chr15	65303871	65305700	+	0	NA	TTS (NR_002757)	TTS (NR_002757)	108	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
75582	chr15	67083071	67084350	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	18108	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
166818	chr3	122683921	122684180	+	0	NA	intron (NM_017554, intron 1 of 16)	intron (NM_017554, intron 1 of 16)	3211	NM_017554	54625		NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	poly(ADP-ribose) polymerase family member 14	protein-coding
104987	chr17	82008051	82008550	+	0	NA	intron (NR_045351, intron 6 of 14)	intron (NR_045351, intron 6 of 14)	14578	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
211628	chr7	106062251	106062550	+	0	NA	Intergenic	Intergenic	49912	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
218425	chr8	47702051	47702150	+	0	NA	intron (NM_001352944, intron 11 of 13)	(AC)n|Simple_repeat|Simple_repeat	36064	NM_005195	1052		NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT enhancer binding protein delta	protein-coding
16691	chr1	155204301	155204500	+	0	NA	intron (NM_001252608, intron 2 of 20)	AluSq|SINE|Alu	3497	NM_001252608	7059		NM_007112	ENSG00000169231	THBS3	TSP3	thrombospondin 3	protein-coding
145936	chr20	46028071	46028230	+	0	NA	intron (NM_001134771, intron 1 of 25)	intron (NM_001134771, intron 1 of 25)	-1065	NM_020708	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
234989	chrX	39730701	39731050	+	0	NA	Intergenic	Intergenic	69659	NR_037501	100500822		NR_037501	ENSG00000263730	MIR3937	-	microRNA 3937	ncRNA
208702	chr7	73284901	73285100	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	23826	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
147244	chr20	57418051	57418850	+	0	NA	Intergenic	Intergenic	-25394	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
222701	chr8	141300251	141300550	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	7888	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
212754	chr7	129926621	129926880	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	26210	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
225668	chr9	36463201	36463400	+	0	NA	Intergenic	Intergenic	-62102	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
193882	chr6	31584121	31584580	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1925	NM_009588	4050		NM_002341	ENSG00000227507	LTB	TNFC|TNFSF3|TNLG1C|p33	lymphotoxin beta	protein-coding
121581	chr19	47280121	47280780	+	0	NA	Intergenic	L2a|LINE|L2	5565	NM_178511	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
92281	chr17	8074701	8075280	+	0	NA	intron (NM_001139, intron 12 of 14)	L2b|LINE|L2	12726	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
25010	chr10	3314251	3314950	+	0	NA	Intergenic	Intergenic	-4095	NR_131187	105376360		NR_131187		LOC105376360	-	uncharacterized LOC105376360	ncRNA
32382	chr10	102412301	102412530	+	0	NA	exon (NM_002779, exon 6 of 17)	exon (NM_002779, exon 6 of 17)	-3138	NR_073110	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
107712	chr18	49751651	49752080	+	0	NA	Intergenic	MIRb|SINE|MIR	61668	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
41516	chr11	66263301	66263500	+	0	NA	intron (NM_001134774, intron 4 of 14)	L2b|LINE|L2	-5239	NM_030981	81876		NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
136879	chr2	189143171	189143480	+	0	NA	intron (NM_000393, intron 1 of 53)	intron (NM_000393, intron 1 of 53)	-10214	NR_036076	100422908		NR_036076	ENSG00000264725	MIR3129	mir-3129	microRNA 3129	ncRNA
161600	chr3	43161801	43162310	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-55976	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
89971	chr16	89821221	89822280	+	0	NA	Intergenic	Intergenic	-5103	NM_000135	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
206877	chr7	37656751	37657500	+	0	NA	Intergenic	Intergenic	-26641	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
140482	chr2	233185751	233185850	+	0	NA	intron (NM_001017915, intron 20 of 26).2	intron (NM_001017915, intron 20 of 26).2	-65771	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
159332	chr3	13067171	13067430	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	6129	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
71817	chr15	22141251	22141350	+	0	NA	Intergenic	HERVL74-int|LTR|ERVL	15789	NR_028067	390539		NR_028067	ENSG00000259435	OR4N3P	OR15-2	olfactory receptor family 4 subfamily N member 3 pseudogene	pseudo
93957	chr17	21455851	21456150	+	0	NA	Intergenic	Intergenic	79643	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
192166	chr6	17598571	17598980	+	0	NA	Intergenic	MER39B|LTR|ERV1	-1527	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
133817	chr2	127829451	127830780	+	0	NA	Intergenic	Intergenic	-18928	NM_001006622	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
230981	chr9	129481501	129481700	+	0	NA	Intergenic	Intergenic	-7060	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
203819	chr7	1404451	1405450	+	0	NA	Intergenic	Intergenic	54520	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
42112	chr11	67604651	67604950	+	0	NA	non-coding (NR_130935, exon 3 of 3)	non-coding (NR_130935, exon 3 of 3)	1906	NR_130935	100505621		NM_173578	ENSG00000184224	NDUFV1-DT	C11orf72	NDUFV1 divergent transcript	ncRNA
164080	chr3	55488351	55488650	+	0	NA	Intergenic	Intergenic	-1194	NM_003392	7474		NM_003392	ENSG00000114251	WNT5A	hWNT5A	Wnt family member 5A	protein-coding
76630	chr15	75576471	75576630	+	0	NA	intron (NM_002833, intron 1 of 12)	AluSx1|SINE|Alu	2765	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
129464	chr2	69572671	69573200	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-52764	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
89302	chr16	88713971	88714830	+	0	NA	TTS (NM_001142864)	TTS (NM_001142864)	1937	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
176595	chr4	98931771	98932180	+	0	NA	Intergenic	AluY|SINE|Alu	-1338	NM_001968	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
62902	chr13	110869871	110870230	+	0	NA	non-coding (NR_027701, exon 1 of 1)	non-coding (NR_027701, exon 1 of 1)	258	NR_027701	283487		NM_178514	ENSG00000255874	PRECSIT	C13orf29|LINC00346|NCRNA00346	p53 regulated carcinoma associated Stat3 activating long intergenic non-protein coding transcript	ncRNA
48849	chr12	12378421	12378950	+	0	NA	intron (NM_058169, intron 2 of 3)	L1MC4a|LINE|L1	21607	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
161950	chr3	46210001	46210200	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-1787	NM_001295	1230		NM_001295	ENSG00000163823	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	C-C motif chemokine receptor 1	protein-coding
151247	chr21	45294851	45295150	+	0	NA	non-coding (NR_026943, exon 3 of 3)	non-coding (NR_026943, exon 3 of 3)	6948	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
185253	chr5	123514221	123515030	+	0	NA	intron (NM_001364146, intron 1 of 10)	intron (NM_001364146, intron 1 of 10)	2448	NM_001270574	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
88350	chr16	84555551	84556030	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-51131	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
227501	chr9	91211651	91212650	+	0	NA	Intergenic	Intergenic	93088	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
217554	chr8	29347071	29348050	+	0	NA	intron (NM_057158, intron 1 of 4)	intron (NM_057158, intron 1 of 4)	1245	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
62371	chr13	99229901	99230100	+	0	NA	intron (NR_026644, intron 1 of 8)	Tigger6a|DNA|TcMar-Tigger	28428	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
44391	chr11	103067071	103067780	+	0	NA	intron (NM_001318741, intron 3 of 6)	intron (NM_001318741, intron 3 of 6)	24735	NM_032299	84259		NM_032299	ENSG00000137692	DCUN1D5	DCNL5|SCCRO5	defective in cullin neddylation 1 domain containing 5	protein-coding
151323	chr21	45579051	45579350	+	0	NA	Intergenic	Intergenic	-14454	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
5693	chr1	26366021	26366280	+	0	NA	intron (NM_173574, intron 3 of 5)	AluSp|SINE|Alu	6600	NM_001114759	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
191709	chr6	13674001	13674200	+	0	NA	intron (NM_005493, intron 2 of 13)	L1MCa|LINE|L1	37735	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
143295	chr20	25294301	25294950	+	0	NA	TTS (NM_015600)	TTS (NM_015600)	46540	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
144647	chr20	36049201	36049730	+	0	NA	non-coding (NR_027451, exon 1 of 1)	non-coding (NR_027451, exon 1 of 1)	1495	NR_027451	647979		NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
89748	chr16	89442471	89443900	+	0	NA	intron (NR_110932, intron 1 of 2)	AluSz|SINE|Alu	12267	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109482	chr19	813711	814590	+	0	NA	TTS (NR_036154)	TTS (NR_036154)	566	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	mir-3187	microRNA 3187	ncRNA
198957	chr6	110875401	110877430	+	0	NA	intron (NM_001287216, intron 1 of 4)	intron (NM_001287216, intron 1 of 4)	1631	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
235392	chrX	45073321	45073580	+	0	NA	intron (NM_001291416, intron 17 of 28)	L1PA6|LINE|L1	127426	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
178300	chr4	145137601	145138000	+	0	NA	exon (NM_001366057, exon 21 of 21)	exon (NM_001366057, exon 21 of 21)	-39259	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
194017	chr6	31816501	31817300	+	0	NA	exon (NM_005345, exon 1 of 1)	exon (NM_005345, exon 1 of 1)	1357	NM_005345	3303		NM_005345	ENSG00000204389	HSPA1A	HEL-S-103|HSP70|HSP70-1|HSP70-1A|HSP70-2|HSP70.1|HSP70.2|HSP70I|HSP72|HSPA1	heat shock protein family A (Hsp70) member 1A	protein-coding
164201	chr3	56863921	56864180	+	0	NA	intron (NM_001289698, intron 2 of 10)	L2c|LINE|L2	52386	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
83482	chr16	27401271	27403850	+	0	NA	5' UTR (NM_181079, exon 1 of 10)	5' UTR (NM_181079, exon 1 of 10)	386	NM_181078	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
228206	chr9	97846001	97846800	+	0	NA	intron (NR_147055, intron 1 of 10)	intron (NR_147055, intron 1 of 10)	6680	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
46822	chr11	130449451	130449550	+	0	NA	exon (NM_139055, exon 1 of 8)	exon (NM_139055, exon 1 of 8)	526	NM_139055	170689		NM_139055	ENSG00000166106	ADAMTS15	DA12	ADAM metallopeptidase with thrombospondin type 1 motif 15	protein-coding
152358	chr22	20469421	20470080	+	0	NA	intron (NR_033825, intron 2 of 5)	intron (NR_033825, intron 2 of 5)	26045	NM_032775	84861		NM_032775	ENSG00000099910	KLHL22	KELCHL	kelch like family member 22	protein-coding
220552	chr8	100710171	100710500	+	0	NA	intron (NM_002568, intron 7 of 14)	intron (NM_002568, intron 7 of 14)	-7311	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
46993	chr12	77701	78250	+	0	NA	intron (NM_015232, intron 1 of 12).2	CpG	599	NM_015232	440073		NM_015232	ENSG00000120645	IQSEC3	-	IQ motif and Sec7 domain ArfGEF 3	protein-coding
25641	chr10	8229221	8229480	+	0	NA	Intergenic	Intergenic	38955	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
120261	chr19	42529221	42529630	+	0	NA	promoter-TSS (NM_001184813)	promoter-TSS (NM_001184813)	-944	NM_001184813	634		NM_001712	ENSG00000079385	CEACAM1	BGP|BGP1|BGPI	CEA cell adhesion molecule 1	protein-coding
21649	chr1	206678371	206678850	+	0	NA	Intergenic	Intergenic	-6295	NM_032960	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
126489	chr2	28398151	28398700	+	0	NA	intron (NM_005253, intron 1 of 3)	intron (NM_005253, intron 1 of 3)	-3753	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
59229	chr13	23578521	23580230	+	0	NA	promoter-TSS (NM_001354985)	promoter-TSS (NM_001354985)	15	NM_001204458	55504		NM_018647	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	TNF receptor superfamily member 19	protein-coding
198607	chr6	107723451	107723750	+	0	NA	intron (NM_001286408, intron 4 of 6)	L1MB8|LINE|L1	8550	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
119746	chr19	41276001	41276400	+	0	NA	exon (NM_007040, exon 5 of 15)	exon (NM_007040, exon 5 of 15)	11119	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
93435	chr17	18572851	18572950	+	0	NA	intron (NR_036647, intron 12 of 16)	CpG	-46054	NM_024974	80039		NM_024974	ENSG00000273018	FAM106A	-	family with sequence similarity 106 member A	ncRNA
237682	chrX	124356571	124357200	+	0	NA	intron (NM_002351, intron 1 of 3)	L1MA8|LINE|L1	10322	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
71034	chr14	104780401	104781050	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	12876	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
183272	chr5	76473421	76474180	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	70515	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
6452	chr1	28250051	28250150	+	0	NA	Intergenic	MIRb|SINE|MIR	-9418	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
92806	chr17	16007401	16008050	+	0	NA	intron (NM_017775, intron 7 of 9)	MER44C|DNA|TcMar-Tigger	7901	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
90363	chr17	1233301	1233500	+	0	NA	Intergenic	(TTCT)n|Simple_repeat|Simple_repeat	-3678	NM_001322841	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
131420	chr2	96285771	96286300	+	0	NA	intron (NM_014014, intron 29 of 44)	intron (NM_014014, intron 29 of 44)	19511	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
152671	chr22	21591801	21592000	+	0	NA	intron (NR_046082, intron 1 of 3)	intron (NR_046082, intron 1 of 3)	24186	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
96061	chr17	39573371	39574430	+	0	NA	Intergenic	CpG	34020	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
84193	chr16	29851221	29851730	+	0	NA	Intergenic	AluSx|SINE|Alu	11751	NM_006319	10423		NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
191631	chr6	13013601	13014000	+	0	NA	5' UTR (NM_001322314, exon 1 of 13)	5' UTR (NM_001322314, exon 1 of 13)	246	NM_001322314	221692		NM_030948	ENSG00000112137	PHACTR1	DEE70|EIEE70|RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
116276	chr19	17718801	17720580	+	0	NA	promoter-TSS (NM_001308363)	promoter-TSS (NM_001308363)	210	NM_018174	55201		NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule associated protein 1S	protein-coding
4503	chr1	21668071	21668600	+	0	NA	intron (NM_001350526, intron 2 of 28)	intron (NM_001350526, intron 2 of 28)	1022	NM_001350526	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
190813	chr6	1393071	1393430	+	0	NA	intron (NM_001452, intron 1 of 1)	CpG	-2839	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
29284	chr10	69224921	69226050	+	0	NA	intron (NR_120648, intron 2 of 4)	intron (NR_120648, intron 2 of 4)	5153	NM_025130	80201		NM_025130	ENSG00000156510	HKDC1	RP92	hexokinase domain containing 1	protein-coding
142670	chr20	5949801	5951180	+	0	NA	promoter-TSS (NM_001281467)	promoter-TSS (NM_001281467)	43	NM_015939	51605		NM_015939	ENSG00000089195	TRMT6	CGI-09|GCD10|Gcd10p	tRNA methyltransferase 6 non-catalytic subunit	protein-coding
10623	chr1	69567051	69567950	+	0	NA	promoter-TSS (NM_001366839)	promoter-TSS (NM_001366839)	-422	NM_001370785	57554		NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
194384	chr6	32989051	32989700	+	0	NA	Intergenic	L1PB3|LINE|L1	16291	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
235143	chrX	41095951	41096580	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	10820	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
186914	chr5	139590751	139591250	+	0	NA	intron (NM_181838, intron 2 of 7)	AluSx|SINE|Alu	29661	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
85370	chr16	50272671	50272830	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	6199	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
22802	chr1	224542801	224543250	+	0	NA	intron (NM_001322304, intron 2 of 6)	MER21C|LTR|ERVL	-73292	NM_152495	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
224705	chr9	21396001	21396490	+	0	NA	Intergenic	CpG	-10847	NM_000605	3440		NM_000605	ENSG00000188379	IFNA2	IFN-alpha-2|IFN-alphaA|IFNA|IFNA2B|leIF A	interferon alpha 2	protein-coding
135993	chr2	172234751	172235650	+	0	NA	Intergenic	Intergenic	132194	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
192198	chr6	17701721	17702550	+	0	NA	intron (NM_001278209, intron 1 of 22)	intron (NM_001278209, intron 1 of 22)	-3995	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
87819	chr16	75616371	75617030	+	0	NA	intron (NM_001324446, intron 6 of 10)	L2a|LINE|L2	6581	NM_001324452	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
74557	chr15	60526071	60526680	+	0	NA	intron (NR_120339, intron 4 of 5)	intron (NR_120339, intron 4 of 5)	47197	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
44856	chr11	114161671	114162000	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	-95971	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
78962	chr15	101378521	101378980	+	0	NA	intron (NM_001291309, intron 9 of 19)	intron (NM_001291309, intron 9 of 19)	44313	NR_132373	105371027		NR_132373	ENSG00000259764	PCSK6-AS1	-	PCSK6 antisense RNA 1	ncRNA
163659	chr3	52201401	52201600	+	0	NA	intron (NM_000688, intron 3 of 11)	AluJo|SINE|Alu	3340	NM_000688	211		NM_000688	ENSG00000023330	ALAS1	ALAS|ALAS-H|ALAS3|ALASH|MIG4	5'-aminolevulinate synthase 1	protein-coding
121306	chr19	46738451	46738900	+	0	NA	intron (NM_001039877, intron 2 of 17)	intron (NM_001039877, intron 2 of 17)	-7382	NM_024301	79147		NM_024301	ENSG00000181027	FKRP	FKTR|LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
30593	chr10	80151171	80151330	+	0	NA	3' UTR (NM_001157, exon 15 of 15)	3' UTR (NM_001157, exon 15 of 15)	18520	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
70245	chr14	101499421	101499500	+	0	NA	Intergenic	Intergenic	57384	NR_135240	100507277		NR_135240	ENSG00000259082	LINC02314	-	long intergenic non-protein coding RNA 2314	ncRNA
36409	chr11	4088101	4088780	+	0	NA	intron (NM_001277961, intron 11 of 11)	intron (NM_001277961, intron 11 of 11)	-6245	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
151029	chr21	44523451	44523850	+	0	NA	intron (NM_144991, intron 8 of 11)	(AGTC)n|Simple_repeat|Simple_repeat	6435	NR_026548	114043		NM_153204		TSPEAR-AS2	C21orf90	TSPEAR antisense RNA 2	ncRNA
193750	chr6	31272901	31273580	+	0	NA	Intergenic	Intergenic	-1104	NM_001243042	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
194230	chr6	32271421	32271700	+	0	NA	intron (NR_136244, intron 2 of 3)	L1PB1|LINE|L1	16387	NR_136244	101929163		NM_001013681	ENSG00000225914	TSBP1-AS1	-	TSBP1 and BTNL2 antisense RNA 1	ncRNA
97038	chr17	42318101	42318500	+	0	NA	intron (NM_001369519, intron 21 of 23)	AluSx1|SINE|Alu	30244	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
163909	chr3	52534901	52535200	+	0	NA	promoter-TSS (NM_022908)	promoter-TSS (NM_022908)	-23	NM_022908	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
124137	chr19	55692201	55692400	+	0	NA	intron (NM_001321263, intron 7 of 10)	intron (NM_001321263, intron 7 of 10)	15675	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
55093	chr12	98126851	98127150	+	0	NA	Intergenic	Intergenic	-131552	NR_036189	100422924		NR_036189	ENSG00000263890	MIR4303	-	microRNA 4303	ncRNA
203602	chr7	936351	937250	+	0	NA	intron (NM_001284308, intron 1 of 10)	intron (NM_001284308, intron 1 of 10)	9016	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
105372	chr17	82672021	82672300	+	0	NA	intron (NM_006822, intron 1 of 5)	intron (NM_006822, intron 1 of 5)	-3853	NR_039751	100616196		NR_039751	ENSG00000266107	MIR4525	-	microRNA 4525	ncRNA
134734	chr2	144584051	144584480	+	0	NA	Intergenic	Intergenic	-59821	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
197934	chr6	89818771	89820530	+	0	NA	5' UTR (NM_014611, exon 1 of 102)	5' UTR (NM_014611, exon 1 of 102)	144	NM_014611	23195		NM_014611	ENSG00000112159	MDN1	Rea1	midasin AAA ATPase 1	protein-coding
225647	chr9	36387821	36388080	+	0	NA	intron (NM_194332, intron 1 of 10)	L1ME3E|LINE|L1	12319	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
27069	chr10	27155901	27157100	+	0	NA	intron (NM_001172303, intron 1 of 11)	intron (NM_001172303, intron 1 of 11)	1148	NM_001320757	84930		NM_032844	ENSG00000120539	MASTL	GREATWALL|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase like	protein-coding
133254	chr2	113342721	113343000	+	0	NA	Intergenic	Intergenic	-63939	NM_003466	7849		NM_003466	ENSG00000125618	PAX8	PAX-8	paired box 8	protein-coding
171440	chr3	196281951	196282250	+	0	NA	intron (NM_001312673, intron 1 of 8)	intron (NM_001312673, intron 1 of 8)	5626	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
185889	chr5	132736951	132738180	+	0	NA	promoter-TSS (NM_001300792)	promoter-TSS (NM_001300792)	-19	NM_001300791	11127		NM_007054	ENSG00000131437	KIF3A	FLA10|KLP-20	kinesin family member 3A	protein-coding
41224	chr11	65710501	65710730	+	0	NA	Intergenic	MER51B|LTR|ERV1	-1637	NM_182710	10524		NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|NEDFASB|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
152945	chr22	22855501	22856080	+	0	NA	Intergenic	Intergenic	-30477	NR_049835	100847006		NR_049835	ENSG00000264824	MIR5571	-	microRNA 5571	ncRNA
195246	chr6	36363621	36363880	+	0	NA	intron (NM_001207039, intron 6 of 6)	LTR12C|LTR|ERV1	23919	NM_001207038	51513		NM_016135	ENSG00000010030	ETV7	TEL-2|TEL2|TELB	ETS variant transcription factor 7	protein-coding
202364	chr6	157763321	157763580	+	0	NA	Intergenic	Intergenic	-59796	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
203952	chr7	1553851	1554300	+	0	NA	intron (NM_001097620, intron 2 of 8)	L2b|LINE|L2	2130	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
24376	chr1	241642651	241642750	+	0	NA	Intergenic	L2a|LINE|L2	-2331	NM_001381854	1122		NM_001821	ENSG00000203668	CHML	REP2	CHM like Rab escort protein	protein-coding
96303	chr17	39957321	39957930	+	0	NA	Intergenic	AluSq|SINE|Alu	-5379	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
21341	chr1	204565671	204566430	+	0	NA	Intergenic	Intergenic	49644	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
25349	chr10	6291571	6292400	+	0	NA	Intergenic	AluSz|SINE|Alu	-34559	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
183129	chr5	74864751	74865050	+	0	NA	promoter-TSS (NR_134288)	promoter-TSS (NR_134288)	-993	NR_134288	441086		NR_134288		FAM169A-AS1	TP53LC02	FAM169A antisense RNA 1	ncRNA
76915	chr15	78042621	78043450	+	0	NA	intron (NM_144572, intron 3 of 12)	intron (NM_144572, intron 3 of 12)	34617	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
90001	chr16	89878771	89879580	+	0	NA	intron (NM_014972, intron 1 of 17)	CpG	5583	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
42951	chr11	73634001	73634400	+	0	NA	Intergenic	Intergenic	-12381	NM_021200	58473		NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding
219088	chr8	65839471	65839630	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	2514	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
182487	chr5	62443651	62444150	+	0	NA	intron (NM_016338, intron 3 of 29)	intron (NM_016338, intron 3 of 29)	25016	NM_001134779	51194		NM_016338	ENSG00000086200	IPO11	RanBP11	importin 11	protein-coding
136436	chr2	176650251	176650430	+	0	NA	intron (NR_110599, intron 2 of 3)	intron (NR_110599, intron 2 of 3)	12586	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
117306	chr19	19498701	19499030	+	0	NA	intron (NM_017660, intron 8 of 11)	intron (NM_017660, intron 8 of 11)	16683	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
169843	chr3	177183821	177184080	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	12528	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
30469	chr10	79178551	79178980	+	0	NA	intron (NM_020338, intron 4 of 24)	intron (NM_020338, intron 4 of 24)	109799	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
136897	chr2	189443601	189443800	+	0	NA	intron (NM_032168, intron 1 of 20)	intron (NM_032168, intron 1 of 20)	2226	NM_032168	84128		NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
78286	chr15	90883271	90883780	+	0	NA	promoter-TSS (NM_002005)	promoter-TSS (NM_002005)	-979	NM_002005	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
150588	chr21	43281251	43281550	+	0	NA	Intergenic	Intergenic	50639	NR_103713	100126693		NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
222382	chr8	133693521	133694600	+	0	NA	Intergenic	Intergenic	-9994	NR_134463	105375773		NR_134462	ENSG00000289906	LINC03024	-	long intergenic non-protein coding RNA 3024	ncRNA
206899	chr7	37825051	37825350	+	0	NA	Intergenic	L2|LINE|L2	-23397	NM_016616	51314		NM_016616	ENSG00000086288	NME8	CILD6|DNAI8|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2	NME/NM23 family member 8	protein-coding
208381	chr7	66659351	66659650	+	0	NA	intron (NM_001367722, intron 1 of 7)	AluJb|SINE|Alu	4933	NM_001367727	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
98189	chr17	46113501	46113700	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	79182	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
134633	chr2	144424771	144425130	+	0	NA	intron (NM_014795, intron 3 of 9)	intron (NM_014795, intron 3 of 9)	-91881	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
161878	chr3	45921801	45922000	+	0	NA	intron (NM_024513, intron 17 of 17)	intron (NM_024513, intron 17 of 17)	-6176	NM_001276379	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
40174	chr11	62891151	62891900	+	0	NA	Intergenic	Intergenic	9826	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
16197	chr1	153821021	153821630	+	0	NA	intron (NM_020699, intron 2 of 10)	intron (NM_020699, intron 2 of 10)	27378	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
173515	chr4	9691051	9692380	+	0	NA	Intergenic	(GCCCCA)n|Simple_repeat|Simple_repeat	-89919	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
201311	chr6	144359151	144359700	+	0	NA	intron (NM_007124, intron 1 of 73)	L1ME4c|LINE|L1	-46230	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
94372	chr17	28923701	28924250	+	0	NA	exon (NM_001290131, exon 4 of 11)	exon (NM_001290131, exon 4 of 11)	-2300	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
78073	chr15	90200921	90202180	+	0	NA	exon (NM_001324031, exon 2 of 15)	exon (NM_001324031, exon 2 of 15)	220	NM_001324033								
229892	chr9	126515971	126516450	+	0	NA	Intergenic	Intergenic	-97718	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
68277	chr14	77086051	77087080	+	0	NA	Intergenic	Intergenic	-10374	NR_110553	102724190		NR_110553	ENSG00000258819	LINC02289	-	long intergenic non-protein coding RNA 2289	ncRNA
2768	chr1	10698921	10699400	+	0	NA	intron (NM_017766, intron 3 of 15)	intron (NM_017766, intron 3 of 15)	97486	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
212115	chr7	116216471	116216630	+	0	NA	intron (NM_015641, intron 1 of 6)	intron (NM_015641, intron 1 of 6)	6011	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
15574	chr1	150565251	150565350	+	0	NA	intron (NR_104133, intron 2 of 3)	AluSq2|SINE|Alu	9252	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
34271	chr10	131895901	131896830	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	-4643	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
31246	chr10	91926501	91927350	+	0	NA	intron (NR_165098, intron 1 of 38)	intron (NR_165098, intron 1 of 38)	3155	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
81521	chr16	9072821	9073230	+	0	NA	Intergenic	Intergenic	-18619	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
218537	chr8	53879021	53879280	+	0	NA	intron (NM_001286674, intron 1 of 2)	intron (NM_001286674, intron 1 of 2)	-1722	NR_104579	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
85529	chr16	53053401	53053600	+	0	NA	promoter-TSS (NR_136518)	promoter-TSS (NR_136518)	-627	NR_147075	105371267		NM_001396020	ENSG00000277639	CHD9NB	PR-lncRNA-1	CHD9 neighbor	protein-coding
189336	chr5	172172771	172174200	+	0	NA	intron (NM_005990, intron 1 of 18)	intron (NM_005990, intron 1 of 18)	14739	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
62679	chr13	102624201	102624400	+	0	NA	intron (NR_160411, intron 6 of 28)	intron (NR_160411, intron 6 of 28)	27314	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
233057	chr9	137072271	137072830	+	0	NA	Intergenic	Intergenic	-1993	NM_178448	89958		NM_178448	ENSG00000186193	SAPCD2	C9orf140|p42.3	suppressor APC domain containing 2	protein-coding
44699	chr11	111531771	111532350	+	0	NA	intron (NM_207430, intron 4 of 6)	L2c|LINE|L2	-8220	NM_001318799	143903		NM_178834	ENSG00000204381	LAYN	-	layilin	protein-coding
103059	chr17	77214721	77215130	+	0	NA	3' UTR (NM_001143998, exon 17 of 17)	3' UTR (NM_001143998, exon 17 of 17)	29712	NM_001144001	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
94901	chr17	31563851	31563950	+	0	NA	Intergenic	Intergenic	3904	NR_029710	406968		NR_029710	ENSG00000207614	MIR193A	MIRN193|MIRN193A|mir-193a	microRNA 193a	ncRNA
99964	chr17	57480401	57480800	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	42997	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
146215	chr20	48790121	48790480	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	37699	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
107516	chr18	48003801	48004030	+	0	NA	Intergenic	Intergenic	-72769	NM_001135937	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
18554	chr1	162566351	162566450	+	0	NA	intron (NM_001324114, intron 2 of 9)	intron (NM_001324114, intron 2 of 9)	4501	NM_001324114	6675		NM_003115	ENSG00000117143	UAP1	AGX|AGX1|AGX2|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
81670	chr16	11079571	11079930	+	0	NA	intron (NM_001243403, intron 18 of 20)	intron (NM_001243403, intron 18 of 20)	135186	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
128446	chr2	55601451	55601550	+	0	NA	intron (NM_020463, intron 3 of 14)	AluY|SINE|Alu	16122	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
65257	chr14	49920301	49920700	+	0	NA	Intergenic	Intergenic	27418	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
234567	chrX	19746121	19746800	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	53313	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
75053	chr15	64160771	64160930	+	0	NA	intron (NM_000942, intron 2 of 4)	AluSq2|SINE|Alu	2172	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
205973	chr7	26170301	26170700	+	0	NA	intron (NM_004289, intron 1 of 3)	L1ME4c|LINE|L1	18302	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
104569	chr17	81357451	81357950	+	0	NA	Intergenic	AluSx3|SINE|Alu	-27026	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
145705	chr20	45027101	45027550	+	0	NA	intron (NM_006282, intron 10 of 10)	AluSp|SINE|Alu	60813	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
52887	chr12	57205171	57205530	+	0	NA	intron (NM_002332, intron 73 of 88)	intron (NM_002332, intron 73 of 88)	10846	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
107831	chr18	54222021	54222380	+	0	NA	TTS (NR_002970)	TTS (NR_002970)	212	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
162182	chr3	46995701	46996230	+	0	NA	exon (NM_015175, exon 15 of 54)	exon (NM_015175, exon 15 of 54)	7975	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
19377	chr1	173998771	173999130	+	0	NA	intron (NM_172071, intron 1 of 19)	AluJr|SINE|Alu	-5878	NM_001300851	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
41712	chr11	66649801	66650580	+	0	NA	intron (NM_001198844, intron 2 of 2)	intron (NM_001198844, intron 2 of 2)	11487	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
180788	chr5	32240851	32241800	+	0	NA	intron (NM_001294344, intron 12 of 13)	intron (NM_001294344, intron 12 of 13)	-67006	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
211501	chr7	105256321	105256780	+	0	NA	intron (NM_001350741, intron 2 of 16)	AluJr4|SINE|Alu	12527	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
101000	chr17	64650101	64650480	+	0	NA	intron (NM_022739, intron 1 of 18)	FLAM_C|SINE|Alu	12017	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
178965	chr4	159315951	159316050	+	0	NA	intron (NM_001351728, intron 3 of 24)	LTR13|LTR|ERVK	48191	NM_014247	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
232263	chr9	134412871	134413600	+	0	NA	intron (NM_001291921, intron 3 of 8)	intron (NM_001291921, intron 3 of 8)	6675	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
221554	chr8	124972951	124974100	+	0	NA	intron (NM_152412, intron 1 of 2)	intron (NM_152412, intron 1 of 2)	230	NM_152412	137209		NM_152412	ENSG00000180938	ZNF572	-	zinc finger protein 572	protein-coding
59905	chr13	30795921	30796730	+	0	NA	Intergenic	Intergenic	-6881	NR_047012	100874158		NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
204186	chr7	2476101	2476780	+	0	NA	promoter-TSS (NM_001291784)	promoter-TSS (NM_001291784)	-57	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
69153	chr14	92574171	92574930	+	0	NA	intron (NM_024832, intron 2 of 9)	LTR9D|LTR|ERV1	-1684	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
210119	chr7	98133021	98133880	+	0	NA	intron (NM_014916, intron 1 of 13)	intron (NM_014916, intron 1 of 13)	26588	NM_014916	22853		NM_014916	ENSG00000164715	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK	lemur tyrosine kinase 2	protein-coding
9638	chr1	52552801	52554000	+	0	NA	promoter-TSS (NM_001009881)	promoter-TSS (NM_001009881)	-308	NM_001009881	23318		NM_015269	ENSG00000134744	TUT4	PAPD3|TENT3A|ZCCHC11	terminal uridylyl transferase 4	protein-coding
104680	chr17	81504351	81504650	+	0	NA	Intergenic	AluY|SINE|Alu	8299	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
18042	chr1	160614171	160614730	+	0	NA	intron (NR_104400, intron 3 of 4)	AluSc5|SINE|Alu	32594	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
103353	chr17	78108001	78108200	+	0	NA	TTS (NM_001374593)	TTS (NM_001374593)	20655	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
118663	chr19	37466651	37467750	+	0	NA	promoter-TSS (NM_001300993)	promoter-TSS (NM_001300993)	244	NM_152484	148266		NM_152484	ENSG00000196437	ZNF569	ZAP1|ZNF|Zfp74	zinc finger protein 569	protein-coding
6675	chr1	29135751	29135850	+	0	NA	Intergenic	Intergenic	-11897	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
73501	chr15	43759921	43760180	+	0	NA	intron (NM_005313, intron 3 of 12)	AluSq2|SINE|Alu	13612	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
124028	chr19	55486821	55488600	+	0	NA	promoter-TSS (NM_001195267)	promoter-TSS (NM_001195267)	-726	NM_001144950	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
112781	chr19	7474471	7475030	+	0	NA	Intergenic	Intergenic	14285	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
54597	chr12	92504371	92504600	+	0	NA	Intergenic	Intergenic	37806	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
122983	chr19	50802121	50802580	+	0	NA	promoter-TSS (NR_003069)	promoter-TSS (NR_003069)	71	NR_003069	692204		NR_003069	ENSG00000220988	SNORD88C	HBII-180C	small nucleolar RNA, C/D box 88C	snoRNA
14265	chr1	143270571	143270750	+	0	NA	Intergenic	Intergenic	151932	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
7522	chr1	34367351	34367450	+	0	NA	Intergenic	ORSL-2b|DNA|hAT-Tip100	190493	NM_001134734	84970		NM_032884	ENSG00000142698	C1orf94	-	chromosome 1 open reading frame 94	protein-coding
141484	chr2	241091521	241091980	+	0	NA	3' UTR (NM_001080437, exon 32 of 32)	3' UTR (NM_001080437, exon 32 of 32)	10537	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
197078	chr6	56542401	56543080	+	0	NA	intron (NM_015548, intron 42 of 83)	CpG	100149	NM_001723	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
87484	chr16	71790171	71790900	+	0	NA	intron (NM_001128, intron 1 of 22)	AluSp|SINE|Alu	18299	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
234710	chrX	20523871	20524250	+	0	NA	Intergenic	L1MEd|LINE|L1	-257151	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
108211	chr18	63154271	63156230	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	164519	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
122212	chr19	48967721	48968180	+	0	NA	TTS (NM_001161587)	TTS (NM_001161587)	2641	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
53141	chr12	57850971	57851500	+	0	NA	Intergenic	Intergenic	-4506	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
35997	chr11	2889571	2889880	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-3950	NM_001362474	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
99328	chr17	49841001	49841200	+	0	NA	intron (NM_001077503, intron 2 of 3)	AluSx1|SINE|Alu	-4786	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
150949	chr21	44301921	44302880	+	0	NA	intron (NM_002626, intron 1 of 21)	intron (NM_002626, intron 1 of 21)	2347	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
97255	chr17	43001651	43001950	+	0	NA	intron (NM_001349921, intron 3 of 4)	intron (NM_001349921, intron 3 of 4)	3381	NM_001349922	6155		NM_000988	ENSG00000131469	RPL27	DBA16|L27|eL27	ribosomal protein L27	protein-coding
3541	chr1	16121171	16121330	+	0	NA	Intergenic	L1MC3|LINE|L1	34819	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
142808	chr20	15895551	15895960	+	0	NA	intron (NR_130924, intron 1 of 1)	LTR32|LTR|ERVL	27559	NR_130925	613266		NR_130924	ENSG00000286546	LOC613266	-	uncharacterized LOC613266	ncRNA
220756	chr8	102368371	102368530	+	0	NA	intron (NM_001282873, intron 1 of 58)	AluJr|SINE|Alu	-43889	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
14290	chr1	143787201	143787400	+	0	NA	Intergenic	Intergenic	-5195	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
86074	chr16	57611121	57611580	+	0	NA	Intergenic	Tigger3d|DNA|TcMar-Tigger	-8388	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
148414	chr20	63949101	63950080	+	0	NA	intron (NR_148442, intron 1 of 15)	intron (NR_148442, intron 1 of 15)	1597	NM_001193379	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
118764	chr19	38378321	38378580	+	0	NA	intron (NM_002812, intron 3 of 6)	AluY|SINE|Alu	3879	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
153276	chr22	24154901	24155100	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-26487	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
16029	chr1	152215611	152216350	+	0	NA	exon (NM_001009931, exon 3 of 3)	exon (NM_001009931, exon 3 of 3)	8213	NM_001009931	388697		NM_001009931	ENSG00000197915	HRNR	FLG3|S100A16|S100a18	hornerin	protein-coding
19668	chr1	180646271	180646780	+	0	NA	intron (NR_137330, intron 1 of 12)	Charlie3|DNA|hAT-Charlie	14503	NR_137330	9213		NM_004736	ENSG00000143324	XPR1	IBGC6|SLC53A1|SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
27603	chr10	32888501	32888700	+	0	NA	Intergenic	L1ME1|LINE|L1	12872	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
119542	chr19	40591551	40591650	+	0	NA	TTS (NM_138392)	TTS (NM_138392)	-1566	NM_003573	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
178851	chr4	153792351	153792880	+	0	NA	Intergenic	CpG	-3532	NM_003013	6423		NM_003013	ENSG00000145423	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled related protein 2	protein-coding
53848	chr12	69603121	69603380	+	0	NA	Intergenic	Intergenic	7657	NM_201550	376132		NM_201550	ENSG00000198812	LRRC10	HRLRRP|LRRC10A	leucine rich repeat containing 10	protein-coding
76727	chr15	76185701	76186080	+	0	NA	intron (NM_152335, intron 8 of 10)	MIR3|SINE|MIR	-4404	NR_120360	101929439		NR_120360	ENSG00000259422	LOC101929439	-	uncharacterized LOC101929439	ncRNA
183994	chr5	90473301	90473500	+	0	NA	promoter-TSS (NM_001370354)	promoter-TSS (NM_001370354)	-529	NM_001370354	10622		NM_006467	ENSG00000113356	POLR3G	C31|RPC32|RPC7	RNA polymerase III subunit G	protein-coding
101281	chr17	66393221	66393680	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	23404	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
157487	chr22	45314201	45314800	+	0	NA	intron (NM_001349915, intron 1 of 7)	intron (NM_001349915, intron 1 of 7)	-3943	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
97775	chr17	44568271	44569400	+	0	NA	Intergenic	LTR12C|LTR|ERV1	11351	NM_001466	2535		NM_001466	ENSG00000180340	FZD2	Fz2|OMOD2|fz-2|fzE2|hFz2	frizzled class receptor 2	protein-coding
198650	chr6	107813851	107814150	+	0	NA	intron (NM_198081, intron 1 of 7)	MLT1H1|LTR|ERVL-MaLR	10313	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
144940	chr20	37033271	37033430	+	0	NA	intron (NM_183404, intron 15 of 20)	AluSc8|SINE|Alu	62647	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
223015	chr8	143288651	143288750	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2717	NM_030895	79943		NM_030895	ENSG00000185730	ZNF696	-	zinc finger protein 696	protein-coding
181974	chr5	55159651	55160030	+	0	NA	promoter-TSS (NR_131340)	promoter-TSS (NR_131340)	-331	NR_131338	493869		NM_001008397	ENSG00000164294	GPX8	EPLA847|GPx-8|GSHPx-8|UNQ847	glutathione peroxidase 8 (putative)	protein-coding
85895	chr16	57065301	57065800	+	0	NA	intron (NM_001384952, intron 33 of 48)	intron (NM_001384952, intron 33 of 48)	-27033	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
85401	chr16	50305521	50306100	+	0	NA	exon (NM_001286057, exon 14 of 19)	exon (NM_001286057, exon 14 of 19)	13194	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
81409	chr16	8620501	8620700	+	0	NA	Intergenic	Intergenic	-1098	NM_024109	79091		NM_024109	ENSG00000067365	METTL22	C16orf68	methyltransferase 22, Kin17 lysine	protein-coding
12334	chr1	101064621	101064880	+	0	NA	intron (NR_109849, intron 1 of 4)	intron (NR_109849, intron 1 of 4)	38904	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
13854	chr1	117662801	117663230	+	0	NA	Intergenic	MSTB-int|LTR|ERVL-MaLR	56967	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
97614	chr17	44137221	44137600	+	0	NA	Intergenic	AluSg|SINE|Alu	-4520	NM_001171251	78995		NM_024032	ENSG00000125319	HROB	C17orf53|MCM8IP	homologous recombination factor with OB-fold	protein-coding
78460	chr15	92881921	92883200	+	0	NA	promoter-TSS (NR_037602)	promoter-TSS (NR_037602)	-283	NR_037600	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
74231	chr15	56731101	56731500	+	0	NA	intron (NM_001002844, intron 1 of 5)	AluJb|SINE|Alu	2786	NM_001288589	54816		NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
84016	chr16	29465121	29465800	+	0	NA	TTS (NM_177552)	TTS (NM_177552)	2118	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
151296	chr21	45534421	45534680	+	0	NA	exon (NM_001205207, exon 1 of 5)	exon (NM_001205207, exon 1 of 5)	206	NM_001205207	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
159560	chr3	14880771	14881550	+	0	NA	intron (NM_152536, intron 4 of 19)	intron (NM_152536, intron 4 of 19)	62198	NM_001320276	152273		NM_152536	ENSG00000154783	FGD5	ZFYVE23	FYVE, RhoGEF and PH domain containing 5	protein-coding
111216	chr19	3492271	3492630	+	0	NA	exon (NM_001145165, exon 4 of 5)	exon (NM_001145165, exon 4 of 5)	8224	NM_031304	83475		NM_031304	ENSG00000129932	DOHH	HLRC1|NEDMVIC|hDOHH	deoxyhypusine hydroxylase	protein-coding
47059	chr12	550571	550730	+	0	NA	intron (NM_173593, intron 10 of 19)	intron (NM_173593, intron 10 of 19)	35836	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
38033	chr11	35148201	35149080	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	9469	NM_001001391	960		NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECM-III|ECMR-III|H-CAM|HCELL|HUTCH-1|HUTCH-I|Hermes-1|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (IN blood group)	protein-coding
146493	chr20	49885021	49885480	+	0	NA	intron (NR_048540, intron 10 of 11)	MER5A|DNA|hAT-Charlie	21391	NR_162136	113219455		NR_162136		MIR12122	-	microRNA 12122	ncRNA
229725	chr9	124866951	124867450	+	0	NA	intron (NM_030978, intron 2 of 5)	AluSx|SINE|Alu	5070	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
78108	chr15	90291751	90292430	+	0	NA	Intergenic	Intergenic	-26331	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
156763	chr22	41845651	41846430	+	0	NA	intron (NR_103834, intron 1 of 21)	L2c|LINE|L2	-11375	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
130703	chr2	86624851	86624950	+	0	NA	intron (NM_001198954, intron 2 of 7)	intron (NM_001198954, intron 2 of 7)	-1023	NM_001198951	7844		NM_005667	ENSG00000239305	RNF103	HKF-1|KF-1|KF1|ZFP-103|ZFP103	ring finger protein 103	protein-coding
178357	chr4	146175351	146176300	+	0	NA	intron (NM_007080, intron 1 of 3)	CpG	107	NM_007080	11157		NM_007080	ENSG00000164167	LSM6	YDR378C	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
198900	chr6	109628551	109628850	+	0	NA	intron (NM_001145128, intron 12 of 40)	L1M5|LINE|L1	62512	NR_138057	221264		NM_145025	ENSG00000155085	AK9	AK 9|AKD1|AKD2|C6orf199|C6orf224|SPGF89|dJ70A9.1	adenylate kinase 9	protein-coding
149561	chr21	33213871	33214630	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-15645	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
232686	chr9	136525921	136526430	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	-6549	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
187945	chr5	149240051	149240850	+	0	NA	intron (NM_001370418, intron 10 of 18)	intron (NM_001370418, intron 10 of 18)	-31388	NM_001323063	134265		NM_152406	ENSG00000157510	AFAP1L1	-	actin filament associated protein 1 like 1	protein-coding
85860	chr16	57029621	57030730	+	0	NA	intron (NM_001384955, intron 10 of 47)	intron (NM_001384955, intron 10 of 47)	40618	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
132180	chr2	101815971	101816130	+	0	NA	intron (NM_001384572, intron 2 of 29)	L1MEc|LINE|L1	117785	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
78495	chr15	92922501	92923230	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	18466	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
78801	chr15	99481821	99482100	+	0	NA	Intergenic	Intergenic	-83457	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
203420	chr7	266651	266750	+	0	NA	Intergenic	Intergenic	-23470	NM_001374838	116033993		NM_001374838	ENSG00000248767	FOXL3	-	forkhead box L3	protein-coding
118286	chr19	35296871	35297780	+	0	NA	intron (NM_001199216, intron 4 of 10)	(AC)n|Simple_repeat|Simple_repeat	5164	NM_002361	4099		NM_002361	ENSG00000105695	MAG	GMA|S-MAG|SIGLEC-4A|SIGLEC4|SIGLEC4A|SPG75	myelin associated glycoprotein	protein-coding
154941	chr22	37233651	37234300	+	0	NA	intron (NM_002872, intron 2 of 6)	intron (NM_002872, intron 2 of 6)	10294	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
159689	chr3	15537771	15537930	+	0	NA	Intergenic	AluSz6|SINE|Alu	-16144	NM_080539	8292		NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
216409	chr8	18564971	18565130	+	0	NA	intron (NM_015310, intron 14 of 15)	intron (NM_015310, intron 14 of 15)	173768	NM_000015	10		NM_000015	ENSG00000156006	NAT2	AAC2|NAT-2|PNAT	N-acetyltransferase 2	protein-coding
168759	chr3	151208651	151208950	+	0	NA	intron (NM_053002, intron 14 of 42)	intron (NM_053002, intron 14 of 42)	-5584	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
207201	chr7	43637251	43638350	+	0	NA	intron (NR_163914, intron 7 of 8)	intron (NR_163914, intron 7 of 8)	54692	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
22961	chr1	226064701	226065500	+	0	NA	intron (NR_002315, intron 2 of 3)	intron (NR_002315, intron 2 of 3)	2373	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
214111	chr7	143987571	143987730	+	0	NA	Intergenic	Intergenic	-16279	NM_001005281	135946		NM_001005281	ENSG00000221813	OR6B1	OR7-3|OR7-9	olfactory receptor family 6 subfamily B member 1	protein-coding
156664	chr22	41645001	41645650	+	0	NA	intron (NM_001288976, intron 6 of 12)	AluSp|SINE|Alu	24030	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
107337	chr18	45771051	45771380	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	44262	NM_001146037	6563		NM_015865	ENSG00000141469	SLC14A1	HUT11|HUT11A|HsT1341|JK|Jk(a)|Jk(b)|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 member 1 (Kidd blood group)	protein-coding
237339	chrX	118526051	118526950	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	30591	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
119797	chr19	41329571	41329730	+	0	NA	TTS (NM_000660)	TTS (NM_000660)	19173	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
159717	chr3	15738551	15738880	+	0	NA	intron (NM_001349280, intron 3 of 26)	MER11B|LTR|ERVK	17832	NM_001195099	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
161907	chr3	45979471	45979780	+	0	NA	intron (NM_024513, intron 4 of 17)	intron (NM_024513, intron 4 of 17)	16199	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
80916	chr16	3780301	3780760	+	0	NA	intron (NM_004380, intron 8 of 30)	intron (NM_004380, intron 8 of 30)	-63006	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
65777	chr14	54485501	54486080	+	0	NA	intron (NM_004124, intron 1 of 6)	L1M2|LINE|L1	3190	NM_004124	2764		NM_004124	ENSG00000197045	GMFB	GMF	glia maturation factor beta	protein-coding
153027	chr22	23240351	23240450	+	0	NA	intron (NM_021574, intron 1 of 21)	AluY|SINE|Alu	-22367	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
197162	chr6	59577651	59578150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1616454	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
102716	chr17	76181851	76182590	+	0	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	-40975	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
130954	chr2	87516671	87516830	+	0	NA	intron (NR_146461, intron 2 of 2)	LTR62|LTR|ERVL	46800	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
116138	chr19	17347301	17347500	+	0	NA	Intergenic	Intergenic	9847	NM_001128855	84705		NM_032620	ENSG00000130299	GTPBP3	COXPD23|GTPBG3|MSS1|MTGP1|THDF1	GTP binding protein 3, mitochondrial	protein-coding
1819	chr1	6241221	6241580	+	0	NA	Intergenic	Intergenic	-2779	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
210060	chr7	95511721	95512050	+	0	NA	intron (NM_145872, intron 2 of 2)	MIRb|SINE|MIR	25942	NM_016116	51666		NM_016116	ENSG00000005981	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
100561	chr17	62668651	62668950	+	0	NA	intron (NM_006039, intron 6 of 29)	intron (NM_006039, intron 6 of 29)	-37406	NR_147886	105371855		NR_147886	ENSG00000265702	LOC105371855	-	uncharacterized LOC105371855	ncRNA
90873	chr17	2378651	2379380	+	0	NA	intron (NM_001346700, intron 21 of 22)	intron (NM_001346700, intron 21 of 22)	22045	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
117581	chr19	21568701	21569770	+	0	NA	Intergenic	Intergenic	63633	NM_001346913	353088		NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
207080	chr7	39967221	39967750	+	0	NA	intron (NM_003718, intron 1 of 13)	L1MA7|LINE|L1	17125	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
195279	chr6	36506451	36507150	+	0	NA	intron (NM_007271, intron 8 of 13)	intron (NM_007271, intron 8 of 13)	40679	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
161657	chr3	43326171	43326780	+	0	NA	intron (NM_017719, intron 3 of 6)	L2b|LINE|L2	25487	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
89124	chr16	88503371	88504100	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	27318	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
208506	chr7	69599201	69600750	+	0	NA	intron (NM_001127232, intron 1 of 4)	CpG	1500	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
19179	chr1	171984901	171985550	+	0	NA	intron (NM_001350204, intron 2 of 20)	intron (NM_001350204, intron 2 of 20)	121033	NR_046845	100874284		NR_046845	ENSG00000233540	DNM3-IT1	-	DNM3 intronic transcript 1	ncRNA
163866	chr3	52496221	52496900	+	0	NA	intron (NM_015136, intron 1 of 68)	intron (NM_015136, intron 1 of 68)	1222	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
6627	chr1	28913901	28915930	+	0	NA	intron (NM_001376013, intron 1 of 20)	CpG	339	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
200252	chr6	132401001	132401630	+	0	NA	exon (NM_015529, exon 1 of 12)	exon (NM_015529, exon 1 of 12)	160	NM_015529	26002		NM_015529	ENSG00000079931	MOXD1	MOX|PRO5780|dJ248E1.1	monooxygenase DBH like 1	protein-coding
58548	chr12	132277971	132278330	+	0	NA	intron (NR_024563, intron 3 of 3)	intron (NR_024563, intron 3 of 3)	2759	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
227628	chr9	92813451	92813750	+	0	NA	non-coding (NR_026868, exon 2 of 10)	non-coding (NR_026868, exon 2 of 10)	3989	NR_026868	138649		NM_001010925	ENSG00000291168	ANKRD19P	ANKRD19|bA526D8.2	ankyrin repeat domain 19, pseudogene	pseudo
144696	chr20	36462651	36463830	+	0	NA	intron (NM_183006, intron 1 of 6)	MIRc|SINE|MIR	1445	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
75786	chr15	68808571	68809100	+	0	NA	intron (NM_006305, intron 1 of 6)	intron (NM_006305, intron 1 of 6)	-1734	NR_026808	80035		NM_024970		ANP32A-IT1	C15orf28|HsT18971|NCRNA00321	ANP32A intronic transcript 1	ncRNA
55116	chr12	98527151	98527450	+	0	NA	intron (NM_001307975, intron 1 of 7)	AluJb|SINE|Alu	-11074	NR_027157	100128191		NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
130604	chr2	85890671	85891130	+	0	NA	intron (NR_110569, intron 1 of 2)	intron (NR_110569, intron 1 of 2)	1620	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
193707	chr6	31157371	31159100	+	0	NA	promoter-TSS (NM_007109)	promoter-TSS (NM_007109)	-38	NM_019052	54535		NM_019052	ENSG00000204536	CCHCR1	C6orf18|HCR|SBP|pg8	coiled-coil alpha-helical rod protein 1	protein-coding
211386	chr7	105016551	105018930	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	3535	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
17918	chr1	160232721	160233200	+	0	NA	intron (NR_028103, intron 6 of 13)	intron (NR_028103, intron 6 of 13)	-24091	NR_123725	729867		NR_123725	ENSG00000227741	LOC729867	-	uncharacterized LOC729867	ncRNA
168931	chr3	152358801	152359000	+	0	NA	intron (NM_001376837, intron 2 of 9)	AluJo|SINE|Alu	-17910	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
83980	chr16	29300021	29300280	+	0	NA	Intergenic	L1MB2|LINE|L1	-2137	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
169221	chr3	157119401	157120350	+	0	NA	intron (NR_034007, intron 1 of 3)	intron (NR_034007, intron 1 of 3)	3127	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
153249	chr22	24059901	24060100	+	0	NA	exon (NM_001199281, exon 12 of 37)	exon (NM_001199281, exon 12 of 37)	48630	NM_001199281	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
114785	chr19	13772251	13772680	+	0	NA	non-coding (NR_138051, exon 7 of 7)	non-coding (NR_138051, exon 7 of 7)	-1991	NM_014047	28974		NM_014047	ENSG00000104979	C19orf53	HSPC023|L10K|LYDG10	chromosome 19 open reading frame 53	protein-coding
99098	chr17	49032071	49032780	+	0	NA	intron (NM_001160423, intron 5 of 12)	intron (NM_001160423, intron 5 of 12)	35040	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
237033	chrX	102863721	102864000	+	0	NA	intron (NR_146589, intron 3 of 11)	intron (NR_146589, intron 3 of 11)	-73412	NM_001031834	282808		NM_001031834	ENSG00000102128	RAB40AL	MRXSMP|RAR2|RLGP	RAB40A like	protein-coding
136391	chr2	176129471	176129700	+	0	NA	promoter-TSS (NM_001199747)	promoter-TSS (NM_001199747)	-120	NM_019558	3234		NM_019558	ENSG00000175879	HOXD8	HOX4|HOX4E|HOX5.4	homeobox D8	protein-coding
138889	chr2	217780771	217780930	+	0	NA	Intergenic	L1MDa|LINE|L1	-24257	NR_026597	729582		NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
71618	chr14	106691571	106692200	+	0	NA	Intergenic	Intergenic	159114	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
208887	chr7	73839371	73839530	+	0	NA	intron (NM_152559, intron 5 of 5)	intron (NM_152559, intron 5 of 5)	3066	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
64282	chr14	23442671	23442850	+	0	NA	Intergenic	Intergenic	-7100	NM_000257	4625		NM_000257	ENSG00000092054	MYH7	CMD1S|CMH1|CMYP7A|CMYP7B|MPD1|MYHCB|SPMD|SPMM	myosin heavy chain 7	protein-coding
16399	chr1	154432321	154432780	+	0	NA	intron (NM_001206866, intron 3 of 6)	AluSx|SINE|Alu	-25986	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
150976	chr21	44331271	44331980	+	0	NA	intron (NM_004928, intron 5 of 6)	intron (NM_004928, intron 5 of 6)	6713	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
98387	chr17	46552951	46553050	+	0	NA	3' UTR (NM_001113738, exon 4 of 4).4	3' UTR (NM_001113738, exon 4 of 4).4	26691	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
163898	chr3	52521701	52522300	+	0	NA	intron (NM_015136, intron 58 of 68)	intron (NM_015136, intron 58 of 68)	11857	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
189517	chr5	173592071	173592330	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	12566	NR_027108	285593		NR_027108	ENSG00000253955	LINC02995	-	long intergenic non-protein coding RNA 2995	ncRNA
218316	chr8	42712551	42712980	+	0	NA	intron (NM_000749, intron 3 of 5)	intron (NM_000749, intron 3 of 5)	15389	NM_001347717	1142		NM_000749	ENSG00000147432	CHRNB3	-	cholinergic receptor nicotinic beta 3 subunit	protein-coding
42248	chr11	68119851	68122400	+	0	NA	exon (NM_001277, exon 1 of 12)	exon (NM_001277, exon 1 of 12)	263	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
131819	chr2	98628751	98628850	+	0	NA	intron (NM_001160154, intron 11 of 12)	Cheshire|DNA|hAT-Charlie	20211	NM_001330353	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
201817	chr6	150019551	150019650	+	0	NA	intron (NM_130900, intron 4 of 4)	intron (NM_130900, intron 4 of 4)	5932	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
34751	chr11	179971	180550	+	0	NA	Intergenic	Intergenic	-12818	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
180294	chr5	4191251	4191350	+	0	NA	Intergenic	Intergenic	-582181	NR_104619	101929153		NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
224936	chr9	33026701	33027400	+	0	NA	intron (NM_001539, intron 3 of 8)	intron (NM_001539, intron 3 of 8)	1777	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
12653	chr1	109263471	109264700	+	0	NA	exon (NM_001408, exon 10 of 34)	exon (NM_001408, exon 10 of 34)	14546	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
144668	chr20	36235921	36237080	+	0	NA	promoter-TSS (NM_001271874)	promoter-TSS (NM_001271874)	22	NM_001271874	25980		NM_015511	ENSG00000131043	AAR2	C20orf4|CGI-23	AAR2 splicing factor	protein-coding
68757	chr14	91056601	91057280	+	0	NA	intron (NM_001322235, intron 1 of 17)	AluSc|SINE|Alu	3184	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
43287	chr11	75896671	75897080	+	0	NA	intron (NM_003369, intron 5 of 14)	intron (NM_003369, intron 5 of 14)	81665	NM_003369	7405		NM_003369	ENSG00000198382	UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
33219	chr10	114069221	114069480	+	0	NA	Intergenic	AluSx4|SINE|Alu	25484	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
66006	chr14	58246221	58246830	+	0	NA	intron (NR_038123, intron 1 of 9)	AluSc|SINE|Alu	1682	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
189491	chr5	173166371	173166530	+	0	NA	Intergenic	Intergenic	21919	NM_013978	662		NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2 interacting protein 1	protein-coding
77407	chr15	83205871	83206180	+	0	NA	intron (NM_016073, intron 1 of 5)	MIR1_Amn|SINE|MIR	1798	NM_016073	50810		NM_016073	ENSG00000166503	HDGFL3	CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3	HDGF like 3	protein-coding
102133	chr17	75075471	75076530	+	0	NA	Intergenic	Intergenic	-11765	NM_001271765	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
151268	chr21	45421471	45421830	+	0	NA	intron (NR_027498, intron 2 of 2)	intron (NR_027498, intron 2 of 2)	3390	NR_028082	378832		NM_199175	ENSG00000183535	COL18A1-AS1	C21orf123|NCRNA00175|PRED80	COL18A1 antisense RNA 1	ncRNA
26314	chr10	15091371	15091730	+	0	NA	Intergenic	Intergenic	-2774	NM_001039844	414149		NM_001039844	ENSG00000176244	ACBD7	bA455B2.2	acyl-CoA binding domain containing 7	protein-coding
174984	chr4	49648471	49649330	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	662258	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
25147	chr10	4354051	4354350	+	0	NA	Intergenic	Intergenic	-30046	NR_108055	100507059		NR_108054	ENSG00000224382	LINC00703	-	long intergenic non-protein coding RNA 703	ncRNA
165544	chr3	101379921	101380850	+	0	NA	intron (NM_001282803, intron 3 of 20)	L1ME3E|LINE|L1	-59810	NM_016247	50939		NM_016247	ENSG00000081148	IMPG2	IPM200|RP56|SPACRCAN|VMD5	interphotoreceptor matrix proteoglycan 2	protein-coding
181038	chr5	35903951	35904050	+	0	NA	TTS (NM_001042625)	TTS (NM_001042625)	34622	NM_001042625	133690		NM_144647	ENSG00000152611	CAPSL	-	calcyphosine like	protein-coding
62861	chr13	110557151	110557450	+	0	NA	intron (NM_017817, intron 1 of 1)	MLT1D-int|LTR|ERVL-MaLR	4422	NM_017817	55647		NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
73429	chr15	43121001	43121580	+	0	NA	Intergenic	AluJb|SINE|Alu	-11825	NM_001347009	80021		NM_024956	ENSG00000137842	TMEM62	-	transmembrane protein 62	protein-coding
176826	chr4	102558951	102559250	+	0	NA	intron (NM_001382625, intron 6 of 24)	L2a|LINE|L2	-56614	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
160424	chr3	28294771	28295300	+	0	NA	intron (NM_001331186, intron 3 of 4)	intron (NM_001331186, intron 3 of 4)	53416	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
128479	chr2	58023401	58024350	+	0	NA	intron (NM_001288837, intron 1 of 15)	intron (NM_001288837, intron 1 of 15)	-22767	NM_001130480	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
186563	chr5	138472321	138473280	+	0	NA	Intergenic	Intergenic	7321	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
62168	chr13	97280551	97281000	+	0	NA	intron (NM_001382697, intron 2 of 4)	L2a|LINE|L2	58442	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
51623	chr12	52948371	52949600	+	0	NA	promoter-TSS (NM_000224)	promoter-TSS (NM_000224)	114	NM_199187	3875		NM_000224	ENSG00000111057	KRT18	CK-18|CYK18|K18	keratin 18	protein-coding
7872	chr1	36392171	36392330	+	0	NA	Intergenic	AluSz6|SINE|Alu	5658	NM_032881	84967		NM_032881	ENSG00000181817	LSM10	MST074|MSTP074	LSM10, U7 small nuclear RNA associated	protein-coding
189760	chr5	176630151	176631150	+	0	NA	promoter-TSS (NM_001099408)	promoter-TSS (NM_001099408)	-25	NM_001099408	253314		NM_001099408	ENSG00000175766	EIF4E1B	-	eukaryotic translation initiation factor 4E family member 1B	protein-coding
171054	chr3	195268971	195269130	+	0	NA	intron (NM_152531, intron 1 of 3)	L2c|LINE|L2	2109	NM_152531	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
29243	chr10	69099971	69100200	+	0	NA	intron (NM_002727, intron 2 of 2)	AluSz|SINE|Alu	11982	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
142977	chr20	20016971	20018230	+	0	NA	promoter-TSS (NM_181527)	promoter-TSS (NM_181527)	-195	NM_181527	51126		NM_016100	ENSG00000173418	NAA20	MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein-coding
62400	chr13	99282601	99283080	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-24412	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
118813	chr19	38527651	38528150	+	0	NA	intron (NM_000540, intron 73 of 105)	intron (NM_000540, intron 73 of 105)	-68447	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
158893	chr3	9917951	9918350	+	0	NA	intron (NM_001367279, intron 3 of 15)	intron (NM_001367279, intron 3 of 15)	1052	NM_153461	84818		NM_032732	ENSG00000163702	IL17RC	CANDF9|IL17-RL|IL17RL	interleukin 17 receptor C	protein-coding
34609	chr10	133272721	133273280	+	0	NA	exon (NM_001164489, exon 7 of 22)	exon (NM_001164489, exon 7 of 22)	3868	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
46563	chr11	128492321	128492650	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	29825	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
62201	chr13	98411901	98412100	+	0	NA	exon (NM_005766, exon 16 of 27)	exon (NM_005766, exon 16 of 27)	110125	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
182435	chr5	62284801	62286180	+	0	NA	Intergenic	AluJb|SINE|Alu	-20672	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
17141	chr1	156187321	156187580	+	0	NA	Intergenic	AluYa5|SINE|Alu	-6654	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
108205	chr18	63136201	63136400	+	0	NA	intron (NM_000633, intron 2 of 2)	L2c|LINE|L2	183469	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
123163	chr19	52205921	52206180	+	0	NA	exon (NM_014225, exon 3 of 15)	exon (NM_014225, exon 3 of 15)	4854	NM_001363656	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
15735	chr1	151068651	151068950	+	0	NA	3' UTR (NM_006818, exon 2 of 2)	3' UTR (NM_006818, exon 2 of 2)	-1961	NM_001323908	126626		NM_144618	ENSG00000143458	GABPB2	GABPB-2	GA binding protein transcription factor subunit beta 2	protein-coding
45336	chr11	118222251	118222350	+	0	NA	intron (NM_001098526, intron 1 of 9)	AluJb|SINE|Alu	2711	NM_001098526	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
111883	chr19	4660201	4660930	+	0	NA	intron (NM_019107, intron 4 of 5)	intron (NM_019107, intron 4 of 5)	9777	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
213440	chr7	138624901	138625480	+	0	NA	intron (NM_174959, intron 9 of 11)	intron (NM_174959, intron 9 of 11)	39034	NM_001331192	136306		NM_174959	ENSG00000157703	SVOPL	SLC22B5	SVOP like	protein-coding
176044	chr4	82376351	82377380	+	0	NA	Intergenic	AluJr|SINE|Alu	-2869	NM_031369	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
89272	chr16	88679721	88680180	+	0	NA	intron (NM_178310, intron 2 of 2)	AluJo|SINE|Alu	6557	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
155567	chr22	38733221	38734500	+	0	NA	TTS (NM_015374)	TTS (NM_015374)	21606	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
178728	chr4	152935571	152936680	+	0	NA	promoter-TSS (NM_001371116)	promoter-TSS (NM_001371116)	-198	NM_001371116	85462		NM_033393	ENSG00000137460	FHDC1	INF1	FH2 domain containing 1	protein-coding
17848	chr1	159919351	159919900	+	0	NA	intron (NM_001277223, intron 3 of 4)	intron (NM_001277223, intron 3 of 4)	4109	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
56007	chr12	110312871	110313650	+	0	NA	intron (NM_170665, intron 5 of 19)	intron (NM_170665, intron 5 of 19)	32013	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
33357	chr10	117168001	117169030	+	0	NA	promoter-TSS (NR_037436)	promoter-TSS (NR_037436)	540	NR_121651	101927704		NR_121650	ENSG00000234474	MIR3663HG	-	MIR3663 host gene	ncRNA
32837	chr10	110030751	110031050	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-22519	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
32014	chr10	100998901	101000480	+	0	NA	promoter-TSS (NM_001318100)	promoter-TSS (NM_001318100)	-118	NM_001318100	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
58756	chr12	132622651	132623050	+	0	NA	TTS (NM_001282164)	TTS (NM_001282164)	4074	NM_170682	22953		NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	purinergic receptor P2X 2	protein-coding
117233	chr19	19425571	19425730	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	-9413	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
218585	chr8	55845221	55845480	+	0	NA	Intergenic	LTR8|LTR|ERV1	-34485	NM_002350	4067		NM_002350	ENSG00000254087	LYN	JTK8|SAIDV|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
163962	chr3	52972701	52972930	+	0	NA	intron (NM_016329, intron 1 of 20)	AluSx1|SINE|Alu	73258	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
129179	chr2	68170551	68171050	+	0	NA	intron (NM_001329916, intron 5 of 5)	HAL1|LINE|L1	12912	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
115461	chr19	15349801	15350000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17361	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
184368	chr5	97182001	97182200	+	0	NA	intron (NM_018343, intron 1 of 9)	intron (NM_018343, intron 1 of 9)	1147	NM_018343	55781		NM_018343	ENSG00000058729	RIOK2	RIO2	RIO kinase 2	protein-coding
145711	chr20	45033671	45033830	+	0	NA	intron (NM_006282, intron 10 of 10)	AluSx1|SINE|Alu	67238	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
18313	chr1	161171371	161172200	+	0	NA	TTS (NM_001122764)	TTS (NM_001122764)	5139	NM_001365398	5498		NM_000309	ENSG00000143224	PPOX	PPO|V290M|VP|VPCO	protoporphyrinogen oxidase	protein-coding
121421	chr19	47012901	47014100	+	0	NA	Intergenic	Intergenic	-6337	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
211515	chr7	105304271	105304900	+	0	NA	intron (NM_001350742, intron 2 of 16)	intron (NM_001350742, intron 2 of 16)	-5806	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
106172	chr18	10032321	10032980	+	0	NA	Intergenic	CpG	118634	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
189203	chr5	171430151	171430480	+	0	NA	intron (NM_003862, intron 2 of 4)	AluSg4|SINE|Alu	10668	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
115790	chr19	16369501	16370910	+	0	NA	intron (NR_047665, intron 21 of 22)	intron (NR_047665, intron 21 of 22)	45379	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
155710	chr22	39101701	39101900	+	0	NA	intron (NM_001166004, intron 3 of 3)	intron (NM_001166004, intron 3 of 3)	4556	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
233112	chr9	137129001	137130750	+	0	NA	Intergenic	CpG	-9279	NM_007327	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
188191	chr5	150653501	150653700	+	0	NA	3' UTR (NM_001166208, exon 3 of 3)	3' UTR (NM_001166208, exon 3 of 3)	-7241	NM_133371	91977		NM_133371	ENSG00000164591	MYOZ3	CS-3|CS3|FATZ-3|FRP3	myozenin 3	protein-coding
8367	chr1	40318801	40319400	+	0	NA	Intergenic	LTR85a|LTR|Gypsy?	-1814	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
162354	chr3	47829321	47829700	+	0	NA	intron (NM_014966, intron 7 of 22)	AluSx1|SINE|Alu	-20045	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
156200	chr22	40289201	40290930	+	0	NA	intron (NM_015088, intron 10 of 20)	L2a|LINE|L2	-56435	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
31578	chr10	97336951	97337730	+	0	NA	Intergenic	Intergenic	-2611	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
106404	chr18	13455501	13456400	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-3997	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
127259	chr2	38703251	38703350	+	0	NA	intron (NM_138801, intron 4 of 6)	AluSp|SINE|Alu	37186	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
150872	chr21	44119651	44119950	+	0	NA	intron (NM_005049, intron 10 of 20).2	intron (NM_005049, intron 10 of 20).2	12401	NM_001368238	102724159		NM_001368238	ENSG00000275464	LOC102724159	-	periodic tryptophan protein 2 homolog	protein-coding
185510	chr5	131324171	131324330	+	0	NA	intron (NM_001375633, intron 2 of 5)	intron (NM_001375633, intron 2 of 5)	60197	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
191762	chr6	14073871	14074400	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-43121	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
84228	chr16	29974601	29975350	+	0	NA	intron (NM_016151, intron 1 of 15)	intron (NM_016151, intron 1 of 15)	1107	NM_001252043	9344		NM_004783	ENSG00000149930	TAOK2	MAP3K17|PSK|PSK1|PSK1-BETA|TAO1|TAO2|Tao2beta	TAO kinase 2	protein-coding
65117	chr14	44899571	44899730	+	0	NA	intron (NR_110050, intron 1 of 2)	intron (NR_110050, intron 1 of 2)	2375	NM_001017923	122525		NM_001017923	ENSG00000179476	C14orf28	DRIP-1|DRIP1|c14_5270	chromosome 14 open reading frame 28	protein-coding
66344	chr14	61446171	61446750	+	0	NA	intron (NM_006255, intron 4 of 13)	intron (NM_006255, intron 4 of 13)	123734	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
224832	chr9	27033651	27034130	+	0	NA	intron (NM_025103, intron 13 of 19)	L1M5|LINE|L1	-28218	NM_022901	64922		NM_022901	ENSG00000184434	LRRC19	-	leucine rich repeat containing 19	protein-coding
173501	chr4	9495521	9495780	+	0	NA	Intergenic	Intergenic	51116	NM_001040448	644414		NM_001040448	ENSG00000186146	DEFB131A	DEFB-31|DEFB131	defensin beta 131A	protein-coding
184396	chr5	98891201	98891600	+	0	NA	intron (NR_157078, intron 15 of 36)	L1MC5|LINE|L1	-37162	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
161582	chr3	42979121	42979680	+	0	NA	promoter-TSS (NM_001129908)	promoter-TSS (NM_001129908)	89	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
207493	chr7	44742571	44743230	+	0	NA	Intergenic	AluSx3|SINE|Alu	-5666	NM_001300959	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
139693	chr2	227462251	227463180	+	0	NA	Intergenic	Intergenic	-9417	NR_049888	100847081		NR_049888	ENSG00000284092	MIR5703	mir-5703	microRNA 5703	ncRNA
201305	chr6	144351401	144352830	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	-53540	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
69213	chr14	92691621	92693380	+	0	NA	Intergenic	Intergenic	56127	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
55776	chr12	108598021	108598280	+	0	NA	promoter-TSS (NM_181724)	promoter-TSS (NM_181724)	-66	NM_181724	338773		NM_181724	ENSG00000183160	TMEM119	OBIF	transmembrane protein 119	protein-coding
91697	chr17	6428951	6429050	+	0	NA	intron (NM_001033055, intron 1 of 4)	MIRb|SINE|MIR	6121	NM_001033054	23746		NM_014336	ENSG00000129221	AIPL1	AIPL2|LCA4	aryl hydrocarbon receptor interacting protein like 1	protein-coding
78592	chr15	93047501	93048180	+	0	NA	intron (NM_001166283, intron 3 of 3)	intron (NM_001166283, intron 3 of 3)	25316	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
89625	chr16	89318771	89318930	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-1602	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
222154	chr8	132757471	132757980	+	0	NA	intron (NM_001382397, intron 2 of 10)	AluY|SINE|Alu	2857	NM_001382396	137835		NM_144649	ENSG00000165071	TMEM71	-	transmembrane protein 71	protein-coding
45907	chr11	120511071	120511780	+	0	NA	promoter-TSS (NM_014619)	promoter-TSS (NM_014619)	-323	NM_014619	2900		NM_014619	ENSG00000149403	GRIK4	EAA1|GRIK|GluK4|GluK4-2|KA1	glutamate ionotropic receptor kainate type subunit 4	protein-coding
166647	chr3	119820971	119821400	+	0	NA	TTS (NM_002093)	TTS (NM_002093)	38475	NM_022002	8856		NM_003889	ENSG00000144852	NR1I2	BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR	nuclear receptor subfamily 1 group I member 2	protein-coding
79017	chr16	54901	55100	+	0	NA	intron (NM_024571, intron 1 of 4)	MER96B|DNA|hAT-Tip100	1172	NM_024571	79622		NM_024571	ENSG00000161981	SNRNP25	C16orf33	small nuclear ribonucleoprotein U11/U12 subunit 25	protein-coding
212101	chr7	116167201	116167530	+	0	NA	Intergenic	LTR33|LTR|ERVL	-43174	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
54749	chr12	93848801	93849050	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	94681	NR_135017	105369911		NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
30963	chr10	87850801	87851100	+	0	NA	Intergenic	Intergenic	12583	NM_001126049	100144748		NM_001126049	ENSG00000227268	KLLN	CWS4|KILLIN	killin, p53 regulated DNA replication inhibitor	protein-coding
104706	chr17	81546071	81546430	+	0	NA	intron (NR_033338, intron 5 of 8)	intron (NR_033338, intron 5 of 8)	6103	NR_033338	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
168512	chr3	143846871	143847200	+	0	NA	intron (NM_173653, intron 1 of 15)	intron (NM_173653, intron 1 of 15)	1433	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
19719	chr1	181100601	181101000	+	0	NA	Intergenic	Intergenic	12100	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
130260	chr2	84859921	84860250	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	20999	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
146201	chr20	48776101	48776550	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	51674	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
110607	chr19	2188621	2188880	+	0	NA	intron (NM_032482, intron 3 of 27)	intron (NM_032482, intron 3 of 27)	24817	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
231016	chr9	129572551	129572850	+	0	NA	Intergenic	Intergenic	-36184	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
176922	chr4	102815671	102816350	+	0	NA	intron (NM_181893, intron 1 of 6)	intron (NM_181893, intron 1 of 6)	9850	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
192050	chr6	16510871	16511350	+	0	NA	intron (NM_000332, intron 6 of 8)	intron (NM_000332, intron 6 of 8)	249074	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
29794	chr10	72286571	72286930	+	0	NA	Intergenic	AluSx|SINE|Alu	12826	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
79834	chr16	1439871	1440030	+	0	NA	intron (NM_001143980, intron 6 of 16)	AluSx1|SINE|Alu	4539	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
23474	chr1	228620721	228621430	+	0	NA	TTS (NR_023363).6	TTS (NR_023363).6	490	NR_023368	100169757		NR_023368	ENSG00000200624	RNA5S6	RN5S6	RNA, 5S ribosomal 6	rRNA
97115	chr17	42520371	42521100	+	0	NA	intron (NM_001378535, intron 22 of 22)	intron (NM_001378535, intron 22 of 22)	6547	NR_049808	100847046		NR_049808	ENSG00000283929	MIR5010	mir-5010	microRNA 5010	ncRNA
180439	chr5	10537421	10538130	+	0	NA	Intergenic	Intergenic	-15691	NR_134289	389273		NR_134289	ENSG00000249160	LINC02213	-	long intergenic non-protein coding RNA 2213	ncRNA
185767	chr5	132295201	132296330	+	0	NA	intron (NM_003059, intron 1 of 9)	intron (NM_003059, intron 1 of 9)	1371	NM_003059	6583		NM_003059	ENSG00000197208	SLC22A4	DFNB60|ETTh|OCTN1	solute carrier family 22 member 4	protein-coding
156081	chr22	40049021	40049630	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	4508	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
220980	chr8	115425901	115426100	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	242013	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
146080	chr20	47524401	47524600	+	0	NA	intron (NM_181659, intron 1 of 22)	LTR9B|LTR|ERV1	22613	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
110957	chr19	2902401	2902800	+	0	NA	intron (NM_173480, intron 1 of 3)	intron (NM_173480, intron 1 of 3)	1672	NM_173480	126295		NM_173480	ENSG00000171970	ZNF57	ZNF424	zinc finger protein 57	protein-coding
85200	chr16	46975371	46975780	+	0	NA	Intergenic	Intergenic	-1901	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
237500	chrX	119955671	119956780	+	0	NA	Intergenic	LTR12|LTR|ERV1	-12474	NM_024528	79576		NM_024528	ENSG00000101882	NKAP	MRXSHD	NFKB activating protein	protein-coding
238086	chrX	136250701	136251700	+	0	NA	intron (NM_001173516, intron 1 of 18)	CpG	200	NM_024597	79649		NM_024597	ENSG00000129680	MAP7D3	MDP3	MAP7 domain containing 3	protein-coding
80846	chr16	3499501	3500400	+	0	NA	Intergenic	LTR54B|LTR|ERV1	-1054	NM_001330454	23059		NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
34063	chr10	124827521	124827930	+	0	NA	intron (NM_032182, intron 5 of 8)	intron (NM_032182, intron 5 of 8)	25906	NM_032182	23172		NM_032182	ENSG00000165660	ABRAXAS2	ABRO1|FAM175B|KIAA0157	abraxas 2, BRISC complex subunit	protein-coding
139794	chr2	230261751	230262850	+	0	NA	intron (NM_001278453, intron 9 of 23)	L1PB1|LINE|L1	36564	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
78261	chr15	90836501	90836900	+	0	NA	Intergenic	Intergenic	-31888	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
74430	chr15	59255951	59256450	+	0	NA	intron (NM_004998, intron 4 of 27)	intron (NM_004998, intron 4 of 27)	49357	NM_033195	92483		NM_033195	ENSG00000171989	LDHAL6B	LDH6B|LDHAL6|LDHL	lactate dehydrogenase A like 6B	protein-coding
131669	chr2	97687321	97687780	+	0	NA	intron (NM_001351368, intron 3 of 7)	intron (NM_001351368, intron 3 of 7)	17807	NM_001351368	728537		NM_001351368	ENSG00000228486	C2orf92	LINC01125	chromosome 2 open reading frame 92	protein-coding
201667	chr6	149503371	149503730	+	0	NA	TTS (NM_139126)	TTS (NM_139126)	-18536	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
160262	chr3	25655421	25656130	+	0	NA	intron (NM_001330700, intron 1 of 35)	L1MB2|LINE|L1	8597	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
203856	chr7	1456571	1457000	+	0	NA	intron (NM_182924, intron 1 of 16)	AluJr|SINE|Alu	2685	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
26553	chr10	21611751	21612050	+	0	NA	intron (NR_136736, intron 6 of 25)	intron (NR_136736, intron 6 of 25)	77668	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
163134	chr3	50135651	50136000	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-19233	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
14491	chr1	144545921	144548150	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	4908	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
14805	chr1	146266071	146266780	+	0	NA	Intergenic	Intergenic	-31348	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
144818	chr20	36773251	36774830	+	0	NA	promoter-TSS (NM_024918)	promoter-TSS (NM_024918)	-277	NM_001145318	79980		NM_024918	ENSG00000149636	DSN1	C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3	DSN1 component of MIS12 kinetochore complex	protein-coding
123310	chr19	53573251	53573350	+	0	NA	intron (NM_001317116, intron 4 of 4)	AluSg|SINE|Alu	17993	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
138510	chr2	207179621	207179880	+	0	NA	Intergenic	AluSc|SINE|Alu	-12504	NM_001270943	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
40222	chr11	63549451	63549930	+	0	NA	Intergenic	Intergenic	12882	NM_004585	5920		NM_004585	ENSG00000133321	PLAAT4	HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3	phospholipase A and acyltransferase 4	protein-coding
87767	chr16	75267971	75268150	+	0	NA	promoter-TSS (NM_001170715).2	promoter-TSS (NM_001170715).2	-53	NM_001170715	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
100114	chr17	58334851	58335270	+	0	NA	TTS (NR_039889)	TTS (NR_039889)	962	NR_039889	100616220		NR_039889	ENSG00000264399	MIR4736	-	microRNA 4736	ncRNA
131580	chr2	96840601	96841100	+	0	NA	exon (NM_144994, exon 4 of 9)	exon (NM_144994, exon 4 of 9)	3171	NM_144994	200539		NM_144994	ENSG00000163126	ANKRD23	DARP|MARP3	ankyrin repeat domain 23	protein-coding
73892	chr15	50644671	50645030	+	0	NA	intron (NR_149152, intron 4 of 38)	intron (NR_149152, intron 4 of 38)	41947	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
125058	chr2	9619701	9620550	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	10872	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
157435	chr22	45209001	45209500	+	0	NA	intron (NM_001009880, intron 2 of 9)	intron (NM_001009880, intron 2 of 9)	3134	NM_015264	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
73923	chr15	50883771	50884630	+	0	NA	Intergenic	Intergenic	-24483	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
18235	chr1	161041401	161042400	+	0	NA	intron (NM_207005, intron 5 of 10)	intron (NM_207005, intron 5 of 10)	-2936	NM_001113206	100131187		NM_001113205	ENSG00000215845	TSTD1	KAT|TST	thiosulfate sulfurtransferase like domain containing 1	protein-coding
192444	chr6	24900921	24901280	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	9634	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
230183	chr9	127793271	127793800	+	0	NA	Intergenic	Intergenic	7501	NM_001261	1025		NM_001261	ENSG00000136807	CDK9	C-2k|CDC2L4|CTK1|PITALRE|TAK	cyclin dependent kinase 9	protein-coding
214564	chr7	150570601	150570800	+	0	NA	intron (NM_001363532, intron 2 of 2)	MLT1H|LTR|ERVL-MaLR	3310	NM_018326	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
129146	chr2	65435521	65437100	+	0	NA	Intergenic	CpG	-3711	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
5800	chr1	26555601	26555800	+	0	NA	intron (NM_001006665, intron 10 of 20)	intron (NM_001006665, intron 10 of 20)	1158	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
115338	chr19	15161521	15161780	+	0	NA	exon (NM_000435, exon 33 of 33)	exon (NM_000435, exon 33 of 33)	17700	NR_106853	102465476		NR_106853	ENSG00000275711	MIR6795	hsa-mir-6795	microRNA 6795	ncRNA
106096	chr18	9148871	9149250	+	0	NA	intron (NM_001204056, intron 1 of 11)	L2c|LINE|L2	11497	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
184431	chr5	99004101	99004300	+	0	NA	TTS (NR_151718)	TTS (NR_151718)	75066	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
232700	chr9	136544271	136544900	+	0	NA	intron (NM_017617, intron 1 of 33)	intron (NM_017617, intron 1 of 33)	1463	NM_017617	4851		NM_017617	ENSG00000148400	NOTCH1	AOS5|AOVD1|TAN1|hN1	notch receptor 1	protein-coding
229640	chr9	124214121	124214800	+	0	NA	Intergenic	Intergenic	-43146	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
124202	chr19	56476321	56477000	+	0	NA	intron (NM_001321356, intron 1 of 6)	intron (NM_001321356, intron 1 of 6)	685	NM_001321356	63934		NM_022103	ENSG00000198046	ZNF667	MIPU1	zinc finger protein 667	protein-coding
647	chr1	1348301	1348500	+	0	NA	intron (NM_004421, intron 1 of 14)	intron (NM_004421, intron 1 of 14)	1018	NM_004421	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
23732	chr1	232459151	232459530	+	0	NA	intron (NM_001377488, intron 10 of 21)	MER3|DNA|hAT-Charlie	170793	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
229996	chr9	126874451	126875350	+	0	NA	intron (NM_001099270, intron 1 of 1)	intron (NM_001099270, intron 1 of 1)	14261	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
72877	chr15	40289621	40289880	+	0	NA	intron (NM_001284298, intron 29 of 30)	intron (NM_001284298, intron 29 of 30)	-7164	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
53918	chr12	71663501	71665230	+	0	NA	promoter-TSS (NM_144982)	promoter-TSS (NM_144982)	64	NM_031435	83591		NM_031435	ENSG00000173451	THAP2	-	THAP domain containing 2	protein-coding
42576	chr11	72000171	72000750	+	0	NA	exon (NM_005699, exon 2 of 4)	exon (NM_005699, exon 2 of 4)	533	NM_001145055	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
64596	chr14	28767471	28767630	+	0	NA	exon (NM_005249, exon 1 of 1)	exon (NM_005249, exon 1 of 1)	763	NM_005249	2290		NM_005249	ENSG00000176165	FOXG1	BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN	forkhead box G1	protein-coding
133648	chr2	127048101	127048700	+	0	NA	3' UTR (NM_001320640, exon 16 of 16)	3' UTR (NM_001320640, exon 16 of 16)	33665	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
41172	chr11	65619101	65620150	+	0	NA	exon (NM_032223, exon 7 of 35)	exon (NM_032223, exon 7 of 35)	3313	NM_032223	399909		NM_032223	ENSG00000197136	PCNX3	PCNXL3	pecanex 3	protein-coding
208769	chr7	73553821	73554250	+	0	NA	intron (NM_001301061, intron 1 of 6)	AluJb|SINE|Alu	3201	NR_036682	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
138767	chr2	216002421	216002680	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	11001	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
105695	chr18	2676621	2676880	+	0	NA	intron (NM_015295, intron 5 of 47)	L1MC4|LINE|L1	21024	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
149114	chr21	17599271	17599430	+	0	NA	intron (NM_006806, intron 3 of 4)	AluJb|SINE|Alu	-12336	NR_149073	110806272		NR_149073	ENSG00000280594	BTG3-AS1	ASBEL	BTG3 antisense RNA 1	ncRNA
47580	chr12	4562001	4562200	+	0	NA	promoter-TSS (NM_001371301)	promoter-TSS (NM_001371301)	-108	NM_001371301	8798		NM_003845	ENSG00000010219	DYRK4	-	dual specificity tyrosine phosphorylation regulated kinase 4	protein-coding
107385	chr18	46070051	46070530	+	0	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	1970	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
110365	chr19	1902621	1903180	+	0	NA	Intergenic	Intergenic	-2499	NM_138422	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
226544	chr9	72352271	72352500	+	0	NA	3' UTR (NM_006007, exon 6 of 6)	3' UTR (NM_006007, exon 6 of 6)	12171	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
62886	chr13	110705551	110707130	+	0	NA	promoter-TSS (NM_024537)	promoter-TSS (NM_024537)	175	NM_001352252	79587		NM_024537	ENSG00000134905	CARS2	COXPD27|cysRS	cysteinyl-tRNA synthetase 2, mitochondrial	protein-coding
55256	chr12	102108001	102108200	+	0	NA	intron (NM_024057, intron 3 of 9)	MLT2B3|LTR|ERVL	12014	NM_024057	79023		NM_024057	ENSG00000075188	NUP37	MCPH24|p37	nucleoporin 37	protein-coding
61311	chr13	50318801	50319330	+	0	NA	intron (NR_109974, intron 2 of 6)	MER1A|DNA|hAT-Charlie	147047	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
65319	chr14	50104471	50105380	+	0	NA	intron (NR_131171, intron 1 of 8)	intron (NR_131171, intron 1 of 8)	118	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
67870	chr14	74251401	74252200	+	0	NA	intron (NM_182894, intron 3 of 4)	intron (NM_182894, intron 3 of 4)	12351	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
93736	chr17	19762151	19762780	+	0	NA	Intergenic	LTR78|LTR|ERV1	-14167	NM_001330150	218		NM_000691	ENSG00000108602	ALDH3A1	ALDH3|ALDHIII	aldehyde dehydrogenase 3 family member A1	protein-coding
97534	chr17	44016151	44016450	+	0	NA	intron (NM_001304813, intron 1 of 4)	AluSz|SINE|Alu	-1337	NM_032376	84336		NM_032376	ENSG00000091947	TMEM101	-	transmembrane protein 101	protein-coding
239318	chrY	17579171	17579600	+	0	NA	promoter-TSS (NR_002161)	promoter-TSS (NR_002161)	67	NR_002160	401629		NR_002160		FAM224B	LINC00230B|NCRNA00230B	family with sequence similarity 224 member B	ncRNA
8198	chr1	39577971	39578350	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-1370	NM_003819	8761		NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
112063	chr19	5153921	5154580	+	0	NA	TTS (NM_015015)	TTS (NM_015015)	185137	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
149636	chr21	33489971	33490330	+	0	NA	intron (NM_001320746, intron 1 of 1).2	AluSc|SINE|Alu	1333	NM_017833	54943		NM_017833	ENSG00000177692	DNAJC28	C21orf55|C21orf78	DnaJ heat shock protein family (Hsp40) member C28	protein-coding
40714	chr11	64796971	64798250	+	0	NA	intron (NM_004579, intron 16 of 31)	intron (NM_004579, intron 16 of 31)	5604	NM_004579	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
214105	chr7	143841551	143842200	+	0	NA	Intergenic	Intergenic	-5158	NR_015421	154761		NR_015421	ENSG00000291149	LOC154761	-	family with sequence similarity 115, member C pseudogene	pseudo
34470	chr10	132456651	132456750	+	0	NA	Intergenic	Intergenic	11511	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
145442	chr20	43473271	43474000	+	0	NA	Intergenic	LTR54|LTR|ERV1	15739	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
229968	chr9	126721371	126721990	+	0	NA	Intergenic	Intergenic	-83326	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
92791	chr17	15945871	15946030	+	0	NA	intron (NM_000676, intron 1 of 1)	CpG	1033	NM_000676	136		NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
22986	chr1	226099151	226099250	+	0	NA	Intergenic	AluJr|SINE|Alu	15625	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
235941	chrX	53241621	53241880	+	0	NA	intron (NM_015075, intron 10 of 13)	intron (NM_015075, intron 10 of 13)	-16328	NM_001353984	8242		NM_004187	ENSG00000126012	KDM5C	DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169	lysine demethylase 5C	protein-coding
76845	chr15	77633271	77633850	+	0	NA	promoter-TSS (NM_032808)	promoter-TSS (NM_032808)	-648	NM_032808	84894		NM_032808	ENSG00000169783	LINGO1	LERN1|LRRN6A|MRT64|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
40675	chr11	64757621	64759050	+	0	NA	exon (NM_005609, exon 4 of 20)	exon (NM_005609, exon 4 of 20)	1639	NM_005609	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
223280	chr8	143733271	143735180	+	0	NA	promoter-TSS (NM_198488)	promoter-TSS (NM_198488)	86	NM_001381874	642574		NM_001381874	ENSG00000203499	IQANK1	CACClnc|FAM83H-AS1|FAM83HAS1|onco-lncRNA-3	IQ motif and ankyrin repeat containing 1	protein-coding
82457	chr16	16586071	16586600	+	0	NA	Intergenic	Intergenic	207090	NM_001282507	101059938		NM_001282507	ENSG00000214967	NPIPA7	NPIPA8	nuclear pore complex interacting protein family member A7	protein-coding
27970	chr10	42636121	42636380	+	0	NA	intron (NM_001305033, intron 1 of 3)	intron (NM_001305033, intron 1 of 3)	2320	NM_001305037	7582		NM_006955	ENSG00000196693	ZNF33B	KOX2|KOX31|ZNF11B	zinc finger protein 33B	protein-coding
58276	chr12	129698551	129698670	+	0	NA	intron (NM_133448, intron 2 of 8)	G-rich|Low_complexity|Low_complexity	205415	NM_133448	121256		NM_133448	ENSG00000151952	TMEM132D	MOLT|PPP1R153	transmembrane protein 132D	protein-coding
112369	chr19	5983001	5983850	+	0	NA	intron (NR_046376, intron 1 of 3)	intron (NR_046376, intron 1 of 3)	5022	NR_046376	100128568		NR_046376	ENSG00000266983	RANBP3-DT	-	RANBP3 divergent transcript	ncRNA
39874	chr11	62480371	62480730	+	0	NA	intron (NM_024060, intron 5 of 5)	AluSg4|SINE|Alu	61517	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
140522	chr2	233220151	233220650	+	0	NA	Intergenic	Intergenic	-31171	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
113257	chr19	8505521	8507680	+	0	NA	Intergenic	Intergenic	-3960	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
114737	chr19	13210971	13211380	+	0	NA	intron (NM_023035, intron 43 of 46)	intron (NM_023035, intron 43 of 46)	60764	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
58083	chr12	124569601	124570000	+	0	NA	Intergenic	Intergenic	-2188	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
208835	chr7	73692601	73693000	+	0	NA	intron (NM_001202560, intron 7 of 12)	intron (NM_001202560, intron 7 of 12)	9203	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
173386	chr4	7963251	7963780	+	0	NA	Intergenic	Intergenic	-23589	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
126529	chr2	28544351	28545400	+	0	NA	intron (NM_153021, intron 14 of 57)	intron (NM_153021, intron 14 of 57)	-21482	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
100636	chr17	63624401	63624900	+	0	NA	intron (NM_001363768, intron 1 of 16)	intron (NM_001363768, intron 1 of 16)	2233	NM_203351	4215		NM_002401	ENSG00000198909	MAP3K3	MAPKKK3|MEKK3	mitogen-activated protein kinase kinase kinase 3	protein-coding
92982	chr17	17140121	17140380	+	0	NA	intron (NM_001364716, intron 7 of 23)	intron (NM_001364716, intron 7 of 23)	66083	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
33159	chr10	112532021	112532500	+	0	NA	intron (NM_001365710, intron 4 of 7)	intron (NM_001365710, intron 4 of 7)	-84657	NM_001351082	64429		NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|DHHC6|ZNF376	zinc finger DHHC-type palmitoyltransferase 6	protein-coding
71769	chr15	21261101	21261300	+	0	NA	Intergenic	REP522|Satellite|telo	36629	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
75761	chr15	68550521	68551100	+	0	NA	intron (NM_001324014, intron 2 of 12)	intron (NM_001324014, intron 2 of 12)	-28183	NM_006091	10391		NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
147899	chr20	62888451	62888550	+	0	NA	3' UTR (NM_080797, exon 15 of 15)	3' UTR (NM_080797, exon 15 of 15)	-5597	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
223001	chr8	143272271	143273330	+	0	NA	intron (NM_138465, intron 2 of 3)	intron (NM_138465, intron 2 of 3)	5355	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
57854	chr12	123275051	123275350	+	0	NA	Intergenic	(GGCTGAGG)n|Simple_repeat|Simple_repeat	-2960	NR_073007	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
200130	chr6	130223401	130224530	+	0	NA	intron (NM_001258275, intron 2 of 13)	LTR1A1|LTR|ERV1	-1014	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
213054	chr7	131062951	131063380	+	0	NA	intron (NR_109852, intron 2 of 5)	L1ME3C|LINE|L1	43865	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
223334	chr8	143826801	143827580	+	0	NA	intron (NM_078480, intron 1 of 11)	intron (NM_078480, intron 1 of 11)	1851	NM_001362896	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
238534	chrX	153726721	153727980	+	0	NA	intron (NM_000033, intron 1 of 9)	intron (NM_000033, intron 1 of 9)	2494	NM_000033	215		NM_000033	ENSG00000101986	ABCD1	ABC42|ALD|ALDP|AMN	ATP binding cassette subfamily D member 1	protein-coding
176450	chr4	89293501	89293780	+	0	NA	intron (NM_198281, intron 1 of 1)	MLT2F|LTR|ERVL	14160	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
88700	chr16	85829151	85829450	+	0	NA	Intergenic	Intergenic	29605	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
69335	chr14	93937571	93937730	+	0	NA	intron (NM_016150, intron 7 of 7)	intron (NM_016150, intron 7 of 7)	10306	NM_001207074	90050		NM_138344	ENSG00000140067	FAM181A	C14orf152	family with sequence similarity 181 member A	protein-coding
163616	chr3	52004471	52004630	+	0	NA	Intergenic	MIRb|SINE|MIR	-8655	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
101533	chr17	67862451	67863080	+	0	NA	intron (NM_182641, intron 2 of 27)	MLT1C-int|LTR|ERVL-MaLR	37262	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
11067	chr1	85171851	85172430	+	0	NA	intron (NM_032184, intron 4 of 6)	L2|LINE|L2	28876	NM_032184	84144		NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
82935	chr16	21841251	21842230	+	0	NA	intron (NM_001310148, intron 5 of 7)	L1MEg|LINE|L1	15917	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
94523	chr17	29561901	29562500	+	0	NA	3' UTR (NM_198147, exon 2 of 2)	3' UTR (NM_198147, exon 2 of 2)	4837	NM_198147	116236		NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding
6036	chr1	27115121	27115850	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	39640	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
109522	chr19	849421	849880	+	0	NA	Intergenic	Intergenic	-2653	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
217803	chr8	33568871	33569030	+	0	NA	Intergenic	AluJb|SINE|Alu	-1822	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
89752	chr16	89445951	89446050	+	0	NA	intron (NR_110931, intron 2 of 2)	intron (NR_110931, intron 2 of 2)	15082	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
139288	chr2	219511071	219511300	+	0	NA	Intergenic	Intergenic	-3297	NM_182847	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
106068	chr18	9110371	9110950	+	0	NA	intron (NM_021074, intron 1 of 7)	AluJb|SINE|Alu	7961	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
133960	chr2	130592571	130593330	+	0	NA	exon (NM_001270421, exon 4 of 4)	exon (NM_001270421, exon 4 of 4)	6625	NM_001270421	55997		NM_032545	ENSG00000136698	CFC1	CFC1B|CRYPTIC|DTGA2|HTX2	cryptic, EGF-CFC family member 1	protein-coding
116894	chr19	18708951	18709250	+	0	NA	intron (NM_015321, intron 1 of 13)	intron (NM_015321, intron 1 of 13)	25420	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
156814	chr22	41929521	41929780	+	0	NA	Intergenic	Intergenic	-2844	NM_052945	115650		NM_052945	ENSG00000159958	TNFRSF13C	BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin	TNF receptor superfamily member 13C	protein-coding
135191	chr2	158455121	158455480	+	0	NA	intron (NM_001301684, intron 1 of 11)	intron (NM_001301684, intron 1 of 11)	1453	NM_001301685	130940		NM_138803	ENSG00000153237	CCDC148	-	coiled-coil domain containing 148	protein-coding
71538	chr14	106213721	106213980	+	0	NA	Intergenic	CpG	-73824	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
81903	chr16	11727671	11727830	+	0	NA	intron (NR_136674, intron 3 of 8)	intron (NR_136674, intron 3 of 8)	15107	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
207215	chr7	43652321	43652700	+	0	NA	intron (NM_001321205, intron 1 of 3)	MIRb|SINE|MIR	69402	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
18058	chr1	160633001	160633200	+	0	NA	intron (NR_104401, intron 3 of 5)	MIRc|SINE|MIR	13944	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
75296	chr15	65186851	65187980	+	0	NA	Intergenic	AluSc|SINE|Alu	-2073	NM_006660	10845		NM_006660	ENSG00000166855	CLPX	EPP2	caseinolytic mitochondrial matrix peptidase chaperone subunit X	protein-coding
22262	chr1	212666321	212666580	+	0	NA	Intergenic	Intergenic	33390	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
95199	chr17	35235221	35235480	+	0	NA	Intergenic	AluJo|SINE|Alu	-7722	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
91191	chr17	3889521	3889780	+	0	NA	intron (NM_172207, intron 1 of 15)	intron (NM_172207, intron 1 of 15)	1093	NM_172206	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
235675	chrX	48599371	48599530	+	0	NA	exon (NM_001347219, exon 4 of 10)	exon (NM_001347219, exon 4 of 10)	1958	NM_017883	64743		NM_017883	ENSG00000101940	WDR13	MG21	WD repeat domain 13	protein-coding
133305	chr2	113692501	113693100	+	0	NA	Intergenic	Intergenic	28568	NR_039943	100616208		NR_039943	ENSG00000265429	MIR4782	-	microRNA 4782	ncRNA
128505	chr2	60104771	60105130	+	0	NA	Intergenic	Intergenic	278086	NR_132991	106660609		NR_132991	ENSG00000228590	MIR4432HG	-	MIR4432 host gene	ncRNA
74932	chr15	63739501	63739700	+	0	NA	intron (NM_003922, intron 12 of 77)	AluSx|SINE|Alu	94348	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
185748	chr5	132116721	132117180	+	0	NA	Intergenic	L1PA7|LINE|L1	43161	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
170117	chr3	183184601	183184980	+	0	NA	intron (NM_015078, intron 27 of 29)	intron (NM_015078, intron 27 of 29)	-22056	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
222715	chr8	141315901	141316300	+	0	NA	Intergenic	L2a|LINE|L2	-7812	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
140726	chr2	234442351	234442650	+	0	NA	Intergenic	Intergenic	12095	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
24723	chr1	247457071	247457430	+	0	NA	Intergenic	Intergenic	-5268	NM_001004492	127623		NM_001004492	ENSG00000177535	OR2B11	-	olfactory receptor family 2 subfamily B member 11	protein-coding
65611	chr14	52265221	52266150	+	0	NA	Intergenic	Intergenic	-2013	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
91898	chr17	7291801	7292330	+	0	NA	intron (NM_015982, intron 2 of 8)	intron (NM_015982, intron 2 of 8)	2574	NM_015982	51087		NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y-box binding protein 2	protein-coding
61619	chr13	73714501	73714800	+	0	NA	intron (NM_007249, intron 7 of 7)	intron (NM_007249, intron 7 of 7)	150406	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
193578	chr6	30676621	30677080	+	0	NA	3' UTR (NM_001134870, exon 4 of 4).6	3' UTR (NM_001134870, exon 4 of 4).6	-3797	NM_001164239	8449		NM_003587	ENSG00000204560	DHX16	DBP2|DDX16|NMOAS|PRO2014|PRP8|PRPF2|Prp2	DEAH-box helicase 16	protein-coding
158071	chr22	49959721	49961200	+	0	NA	promoter-TSS (NM_001001852)	promoter-TSS (NM_001001852)	-312	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
92266	chr17	8041001	8041690	+	0	NA	intron (NM_001039131, intron 3 of 11)	MIRc|SINE|MIR	2286	NM_001039131	247		NM_001141	ENSG00000179593	ALOX15B	15-LOX-2	arachidonate 15-lipoxygenase type B	protein-coding
126390	chr2	27571651	27571750	+	0	NA	Intergenic	Intergenic	-4822	NM_032266	84226		NM_032266	ENSG00000221843	SPATA31H1	C2orf16	SPATA31 subfamily H member 1	protein-coding
6630	chr1	28917751	28918250	+	0	NA	intron (NM_001376013, intron 1 of 20)	intron (NM_001376013, intron 1 of 20)	3424	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
166668	chr3	120088601	120089150	+	0	NA	intron (NM_001146156, intron 1 of 10)	intron (NM_001146156, intron 1 of 10)	-4227	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
182845	chr5	69366351	69366850	+	0	NA	intron (NM_001015892, intron 1 of 2).2	intron (NM_001015892, intron 1 of 2).2	-2697	NM_133343	5884		NM_002873	ENSG00000152942	RAD17	CCYC|HRAD17|R24L|RAD17SP|RAD24	RAD17 checkpoint clamp loader component	protein-coding
52332	chr12	54981721	54982280	+	0	NA	promoter-TSS (NM_001098815)	promoter-TSS (NM_001098815)	-69	NM_001098815	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
53852	chr12	69736051	69736630	+	0	NA	intron (NR_110072, intron 1 of 3)	AluSq2|SINE|Alu	2210	NR_159971	101928002		NR_110072	ENSG00000247131	LOC101928002	-	uncharacterized LOC101928002	ncRNA
22591	chr1	223136051	223136350	+	0	NA	intron (NM_003268, intron 3 of 5)	intron (NM_003268, intron 3 of 5)	7048	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
72169	chr15	29126951	29127450	+	0	NA	intron (NM_015307, intron 8 of 10)	intron (NM_015307, intron 8 of 10)	56542	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
155989	chr22	39918871	39919400	+	0	NA	intron (NM_004810, intron 1 of 7)	AluJo|SINE|Alu	-7469	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
182370	chr5	60686671	60686900	+	0	NA	intron (NM_001145208, intron 2 of 9)	intron (NM_001145208, intron 2 of 9)	13381	NM_001145208	55789		NM_018369	ENSG00000035499	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
225818	chr9	37753641	37754730	+	0	NA	intron (NM_001286954, intron 1 of 7)	intron (NM_001286954, intron 1 of 7)	380	NM_144964	158234		NM_144964	ENSG00000165275	TRMT10B	RG9MTD3|bA3J10.9	tRNA methyltransferase 10B	protein-coding
24188	chr1	235933551	235933650	+	0	NA	Intergenic	Intergenic	-49887	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
160036	chr3	18432071	18432230	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	6586	NM_001131010	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
70032	chr14	100101721	100102600	+	0	NA	intron (NM_016337, intron 3 of 13)	L1M5|LINE|L1	7354	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
141524	chr2	241224201	241224480	+	0	NA	3' UTR (NM_001370694, exon 25 of 25)	3' UTR (NM_001370694, exon 25 of 25)	35663	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
213830	chr7	141590471	141591050	+	0	NA	intron (NM_018238, intron 2 of 15)	intron (NM_018238, intron 2 of 15)	39350	NM_001364948	55750		NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
109726	chr19	1085071	1085350	+	0	NA	intron (NM_012292, intron 22 of 22)	THE1B|LTR|ERVL-MaLR	8576	NM_001282334	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
86578	chr16	67233751	67234630	+	0	NA	exon (NM_013241, exon 13 of 22)	exon (NM_013241, exon 13 of 22)	7060	NM_014187	29100		NM_014187	ENSG00000168701	TMEM208	HSPC171|SND2|hSND2	transmembrane protein 208	protein-coding
89556	chr16	89244601	89246130	+	0	NA	Intergenic	AluSz|SINE|Alu	27662	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
24881	chr10	944501	944700	+	0	NA	Intergenic	Intergenic	11574	NR_120629	101927762		NR_120629	ENSG00000229869	LARP4B-DT	-	LARP4B divergent transcript	ncRNA
236076	chrX	56760071	56760230	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-22566	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
63428	chr13	114097801	114098830	+	0	NA	intron (NM_001320821, intron 1 of 25).2	(GGACAGA)n|Simple_repeat|Simple_repeat	-20360	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
152727	chr22	21667571	21667830	+	0	NA	intron (NM_148175, intron 1 of 20)	intron (NM_148175, intron 1 of 20)	1688	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
221803	chr8	127983051	127983350	+	0	NA	intron (NR_003367, intron 3 of 8)	intron (NR_003367, intron 3 of 8)	22567	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
87949	chr16	79595221	79595680	+	0	NA	3' UTR (NM_001031804, exon 1 of 1)	3' UTR (NM_001031804, exon 1 of 1)	5287	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
148070	chr20	63283801	63285050	+	0	NA	non-coding (NR_104023, exon 1 of 4)	non-coding (NR_104023, exon 1 of 4)	113	NR_104022	55738		NM_018209	ENSG00000101199	ARFGAP1	ARF1GAP|HRIHFB2281	ADP ribosylation factor GTPase activating protein 1	protein-coding
103016	chr17	76924871	76925450	+	0	NA	intron (NM_144677, intron 9 of 16)	intron (NM_144677, intron 9 of 16)	44039	NR_136416	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
216462	chr8	19629971	19630530	+	0	NA	intron (NM_001354476, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	-27705	NM_001354499	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
147877	chr20	62830621	62831300	+	0	NA	intron (NM_001853, intron 24 of 31)	intron (NM_001853, intron 24 of 31)	-13606	NM_080750	100132911		NM_080750		DPH3P1	C20orf143|DPH3B|ZCSL1	diphthamide biosynthesis 3 pseudogene 1	pseudo
110900	chr19	2726771	2727280	+	0	NA	Intergenic	Intergenic	-5653	NM_145173	148252		NM_145173	ENSG00000176490	DIRAS1	Di-Ras1|GBTS1|RIG	DIRAS family GTPase 1	protein-coding
237557	chrX	120675671	120675900	+	0	NA	Intergenic	THE1C-int|LTR|ERVL-MaLR	-45635	NM_152692	29071		NM_152692	ENSG00000171155	C1GALT1C1	AHUS8|C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS	C1GALT1 specific chaperone 1	protein-coding
107559	chr18	48806451	48807430	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	135867	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
180849	chr5	32588971	32589480	+	0	NA	intron (NM_006713, intron 2 of 4)	AluJr|SINE|Alu	3668	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
64981	chr14	37903571	37903780	+	0	NA	Intergenic	Intergenic	-1551	NR_135286	400208		NR_135286	ENSG00000259091	LINC00517	C14orf26	long intergenic non-protein coding RNA 517	ncRNA
220687	chr8	101255771	101256030	+	0	NA	Intergenic	Intergenic	-49836	NM_001267709	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
182527	chr5	65565321	65565580	+	0	NA	intron (NM_001278926, intron 2 of 11)	Tigger8|DNA|TcMar-Tigger	2154	NM_015342	23398		NM_015342	ENSG00000113593	PPWD1	-	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding
8431	chr1	40625101	40625300	+	0	NA	3' UTR (NM_014747, exon 8 of 8)	3' UTR (NM_014747, exon 8 of 8)	40482	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
166696	chr3	120559901	120560100	+	0	NA	Intergenic	Intergenic	-36336	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
190286	chr5	179564021	179564280	+	0	NA	intron (NM_001040452, intron 3 of 17).2	AluSq|SINE|Alu	4419	NM_001040451	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
48919	chr12	12621371	12621780	+	0	NA	intron (NM_001310, intron 1 of 3)	MER58A|DNA|hAT-Charlie	9699	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
38987	chr11	47591901	47592100	+	0	NA	intron (NM_031909, intron 1 of 1)	intron (NM_031909, intron 1 of 1)	2411	NM_031909	114900		NM_031909	ENSG00000172247	C1QTNF4	CTRP4|ZACRP4	C1q and TNF related 4	protein-coding
177015	chr4	106318251	106318830	+	0	NA	intron (NM_001142416, intron 1 of 6)	Kanga1c|DNA|TcMar-Tc2	-1857	NM_001163436	93627		NM_033115	ENSG00000145348	TBCK	FERRY1|Fy-1|HSPC302|IHPRF3|TBCKL	TBC1 domain containing kinase	protein-coding
32638	chr10	103694701	103694900	+	0	NA	intron (NM_014631, intron 5 of 13)	intron (NM_014631, intron 5 of 13)	-16585	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
95027	chr17	32482621	32482880	+	0	NA	3' UTR (NM_002815, exon 14 of 14)	3' UTR (NM_002815, exon 14 of 14)	-4243	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
210156	chr7	98253621	98254450	+	0	NA	Intergenic	AluY|SINE|Alu	-1803	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
192007	chr6	16332051	16333200	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	94038	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
23536	chr1	229192071	229193030	+	0	NA	Intergenic	Intergenic	-17749	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
17647	chr1	157157171	157157330	+	0	NA	Intergenic	Intergenic	-18659	NM_005240	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
49477	chr12	25198151	25198500	+	0	NA	intron (NM_001001660, intron 1 of 2)	HAL1|LINE|L1	3088	NM_001001660	144363		NM_001001660	ENSG00000205707	ETFRF1	LYRM5	electron transfer flavoprotein regulatory factor 1	protein-coding
27734	chr10	35120121	35120700	+	0	NA	Intergenic	Intergenic	-6431	NM_001881	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
110650	chr19	2241021	2241750	+	0	NA	intron (NM_007165, intron 1 of 8)	intron (NM_007165, intron 1 of 8)	4561	NM_007165	8175		NM_007165	ENSG00000104897	SF3A2	PRP11|PRPF11|SAP62|SF3a66	splicing factor 3a subunit 2	protein-coding
128164	chr2	48556501	48556900	+	0	NA	intron (NM_001198595, intron 2 of 4)	SVA_F|Retroposon|SVA	-12078	NM_172311	286749		NM_172311	ENSG00000068781	STON1-GTF2A1L	ALF|GTF2A1L|GTF2A1LF|SALF	STON1-GTF2A1L readthrough	protein-coding
184347	chr5	96969351	96969450	+	0	NA	intron (NM_175920, intron 1 of 17)	intron (NM_175920, intron 1 of 17)	10967	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
196322	chr6	43093551	43094080	+	0	NA	intron (NM_001270398, intron 1 of 19)	MER51A|LTR|ERV1	17001	NM_001270398	5754		NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
205171	chr7	7521371	7521530	+	0	NA	intron (NM_001037763, intron 5 of 34)	intron (NM_001037763, intron 5 of 34)	14423	NM_001037763	340267		NM_001037763	ENSG00000215018	COL28A1	COL28	collagen type XXVIII alpha 1 chain	protein-coding
153894	chr22	30295971	30296930	+	0	NA	intron (NM_031937, intron 3 of 8)	intron (NM_031937, intron 3 of 8)	-6945	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
113814	chr19	10595501	10596000	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-6705	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
184223	chr5	96374601	96374950	+	0	NA	intron (NR_130776, intron 3 of 4)	MLT1N2|LTR|ERVL-MaLR	57384	NM_001177875	5122		NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC1/3|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
68109	chr14	75364071	75364230	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-63574	NM_001135047	122953		NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
77894	chr15	89130161	89131130	+	0	NA	intron (NM_152924, intron 3 of 10)	intron (NM_152924, intron 3 of 10)	42189	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
43797	chr11	86304301	86304500	+	0	NA	intron (NM_001322407, intron 2 of 5)	Tigger17c|DNA|TcMar-Tigger	2160	NR_136324	51501		NM_016401	ENSG00000149196	HIKESHI	C11orf73|HLD13|HSPC138|HSPC179|L7RN6|OPI10	heat shock protein nuclear import factor hikeshi	protein-coding
162211	chr3	47019101	47019950	+	0	NA	intron (NR_146158, intron 20 of 21)	intron (NR_146158, intron 20 of 21)	7983	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
71947	chr15	23047601	23048490	+	0	NA	Intergenic	Intergenic	-8372	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
82610	chr16	18905171	18905330	+	0	NA	intron (NM_015092, intron 1 of 62)	AluSx3|SINE|Alu	21158	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
104935	chr17	81931501	81932630	+	0	NA	TTS (NM_006907)	TTS (NM_006907)	4236	NR_015454	92659		NR_015454	ENSG00000265688	MILIP	MAFG-AS1|MAFG-DT	MYC inducible lncRNA inactivating p53	ncRNA
738	chr1	1473721	1474530	+	0	NA	intron (NM_031921, intron 1 of 15)	FLAM_A|SINE|Alu	2360	NM_031921	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
161264	chr3	39267301	39268500	+	0	NA	intron (NM_001171174, intron 1 of 1)	intron (NM_001171174, intron 1 of 1)	12136	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
9915	chr1	54414271	54414430	+	0	NA	Intergenic	L2c|LINE|L2	-7956	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
83585	chr16	28158901	28159300	+	0	NA	intron (NM_001270940, intron 7 of 24)	AluJo|SINE|Alu	52865	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
155548	chr22	38717101	38717850	+	0	NA	intron (NM_004286, intron 4 of 11)	intron (NM_004286, intron 4 of 11)	11531	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
66383	chr14	61488721	61489180	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	81244	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
224442	chr9	15357071	15357450	+	0	NA	Intergenic	AluJo|SINE|Alu	-49900	NM_152574	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
60081	chr13	34941871	34942880	+	0	NA	5' UTR (NM_001379245, exon 1 of 58)	5' UTR (NM_001379245, exon 1 of 58)	105	NM_001379245	26960		NM_015678	ENSG00000172915	NBEA	BCL8B|LYST2|NEDEGE	neurobeachin	protein-coding
216575	chr8	21948001	21948200	+	0	NA	intron (NM_001362802, intron 1 of 26)	intron (NM_001362802, intron 1 of 26)	28438	NM_001362802	23039		NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
96753	chr17	41702371	41702750	+	0	NA	Intergenic	AluJo|SINE|Alu	-9771	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
101112	chr17	65015821	65016650	+	0	NA	intron (NM_001282425, intron 3 of 3)	intron (NM_001282425, intron 3 of 3)	39539	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
173628	chr4	13431301	13431500	+	0	NA	intron (NM_001017979, intron 4 of 6)	L1PA17|LINE|L1	52940	NM_001017979	9364		NM_004249	ENSG00000157869	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
42772	chr11	72747721	72747980	+	0	NA	intron (NM_001040118, intron 1 of 34)	intron (NM_001040118, intron 1 of 34)	4539	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
64792	chr14	34859021	34859280	+	0	NA	intron (NM_013448, intron 3 of 26)	intron (NM_013448, intron 3 of 26)	-15041	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
150428	chr21	42414171	42414330	+	0	NA	intron (NM_018961, intron 5 of 14)	intron (NM_018961, intron 5 of 14)	10348	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
166940	chr3	125143351	125144150	+	0	NA	intron (NM_024628, intron 5 of 13)	intron (NM_024628, intron 5 of 13)	7802	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
156257	chr22	40408901	40409100	+	0	NA	exon (NM_001350041, exon 19 of 22)	exon (NM_001350041, exon 19 of 22)	38406	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
197109	chr6	57170821	57171100	+	0	NA	TTS (NM_001031623)	TTS (NM_001031623)	1253	NR_110742	101927211		NR_110742		ZNF451-AS1	-	ZNF451 regulatory antisense RNA 1	ncRNA
220719	chr8	101979571	101979730	+	0	NA	intron (NM_001040625, intron 3 of 6)	intron (NM_001040625, intron 3 of 6)	-4782	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
93532	chr17	19040121	19041580	+	0	NA	intron (NM_001330148, intron 2 of 3)	L2c|LINE|L2	6107	NM_006613	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
178539	chr4	151030871	151031030	+	0	NA	Intergenic	L2|LINE|L2	-15223	NM_001367550	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
15078	chr1	148463071	148463230	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3230	NR_027468	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
165095	chr3	71497201	71497800	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	44589	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
67025	chr14	67541851	67542180	+	0	NA	intron (NM_020715, intron 2 of 28)	intron (NM_020715, intron 2 of 28)	-8165	NM_001348546	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
164493	chr3	60080451	60080980	+	0	NA	intron (NR_135491, intron 1 of 6)	intron (NR_135491, intron 1 of 6)	194	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
108182	chr18	63052051	63052300	+	0	NA	Intergenic	Intergenic	267594	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
122181	chr19	48918521	48919350	+	0	NA	promoter-TSS (NR_046633)	promoter-TSS (NR_046633)	-44	NR_046633	100874085		NR_046633	ENSG00000235191	NUCB1-AS1	-	NUCB1 antisense RNA 1	ncRNA
129197	chr2	68200321	68201050	+	0	NA	intron (NM_000945, intron 2 of 5)	intron (NM_000945, intron 2 of 5)	42797	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
6087	chr1	27241621	27241880	+	0	NA	intron (NM_015023, intron 1 of 15)	intron (NM_015023, intron 1 of 15)	7118	NM_015023	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
97476	chr17	43774871	43775430	+	0	NA	intron (NM_004090, intron 1 of 2)	L2c|LINE|L2	3827	NM_004090	1845		NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
42252	chr11	68124151	68124600	+	0	NA	Intergenic	AluJr|SINE|Alu	-2987	NM_001376220	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
199290	chr6	111984051	111984480	+	0	NA	Intergenic	L2a|LINE|L2	-69839	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
224711	chr9	21443701	21444700	+	0	NA	Intergenic	Intergenic	3761	NM_024013	3439		NM_024013	ENSG00000197919	IFNA1	IFL|IFN|IFN-ALPHA|IFN-alphaD|IFNA13|IFNA@|leIF D	interferon alpha 1	protein-coding
191566	chr6	11822401	11822600	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-43453	NM_001143948	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
24206	chr1	236098771	236099450	+	0	NA	Intergenic	Intergenic	-34020	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
154143	chr22	31267571	31268000	+	0	NA	exon (NM_016733, exon 9 of 15)	exon (NM_016733, exon 9 of 15)	19401	NM_001031801	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
236049	chrX	55908901	55909180	+	0	NA	intron (NM_001324105, intron 1 of 5)	intron (NM_001324105, intron 1 of 5)	755	NM_001324104	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
106047	chr18	8844751	8844850	+	0	NA	Intergenic	Intergenic	127419	NM_015210	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
96273	chr17	39865961	39866430	+	0	NA	Intergenic	L1MC3|LINE|L1	-1883	NM_012481	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
36903	chr11	10787451	10787930	+	0	NA	Intergenic	AluJb|SINE|Alu	13918	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
1518	chr1	2922001	2922330	+	0	NA	Intergenic	Intergenic	-99302	NM_080431	140625		NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin related protein T2	protein-coding
111259	chr19	3534171	3534550	+	0	NA	intron (NM_001136198, intron 11 of 12)	intron (NM_001136198, intron 11 of 12)	-4797	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
92480	chr17	8799301	8799500	+	0	NA	promoter-TSS (NM_152599)	promoter-TSS (NM_152599)	-35	NM_152599	162387		NM_152599	ENSG00000185156	MFSD6L	-	major facilitator superfamily domain containing 6 like	protein-coding
126738	chr2	30200001	30200480	+	0	NA	Intergenic	Intergenic	12806	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
161786	chr3	45040571	45041200	+	0	NA	Intergenic	Intergenic	10742	NM_001308394	7123		NM_003278	ENSG00000163815	CLEC3B	MCDR4|TN|TNA	C-type lectin domain family 3 member B	protein-coding
99594	chr17	50533571	50533800	+	0	NA	intron (NM_017957, intron 1 of 9)	intron (NM_017957, intron 1 of 9)	950	NM_017957	55040		NM_017957	ENSG00000049283	EPN3	-	epsin 3	protein-coding
30072	chr10	73873401	73875880	+	0	NA	promoter-TSS (NM_001367535)	promoter-TSS (NM_001367535)	-49	NM_172171	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
190663	chr5	181250601	181250950	+	0	NA	intron (NR_109909, intron 2 of 2)	intron (NR_109909, intron 2 of 2)	4234	NR_109909	101928649		NR_109909	ENSG00000233937	CTC-338M12.4	-	uncharacterized LOC101928649	ncRNA
96086	chr17	39610251	39610950	+	0	NA	Intergenic	AluJb|SINE|Alu	-2680	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
236192	chrX	65670671	65670830	+	0	NA	intron (NM_002444, intron 1 of 12)	AluSg|SINE|Alu	3096	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
4058	chr1	19058801	19059000	+	0	NA	Intergenic	Intergenic	-102224	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
28836	chr10	62386171	62386330	+	0	NA	intron (NM_199450, intron 2 of 4)	intron (NM_199450, intron 2 of 4)	-11123	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
55572	chr12	106248801	106250530	+	0	NA	Intergenic	Intergenic	-1645	NM_006825	10970		NM_006825	ENSG00000136026	CKAP4	CLIMP-63|CLIMP63|ERGIC-63|p63	cytoskeleton associated protein 4	protein-coding
42434	chr11	69292371	69293150	+	0	NA	Intergenic	Intergenic	-1395	NM_001293294	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
78796	chr15	99452951	99453250	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-112317	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
104502	chr17	81207401	81208580	+	0	NA	intron (NM_014984, intron 3 of 25)	(AC)n|Simple_repeat|Simple_repeat	14975	NM_001319228	22994		NM_014984	ENSG00000141577	CEP131	AZ1|AZI1|ZA1	centrosomal protein 131	protein-coding
168716	chr3	150739421	150740300	+	0	NA	promoter-TSS (NR_121657)	promoter-TSS (NR_121657)	-875	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
187727	chr5	143418301	143418700	+	0	NA	intron (NM_001018075, intron 1 of 8)	intron (NM_001018075, intron 1 of 8)	-13145	NM_001364180	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
68307	chr14	77315471	77316530	+	0	NA	intron (NM_013382, intron 1 of 20)	AluSx1|SINE|Alu	4883	NM_013382	29954		NM_013382	ENSG00000009830	POMT2	LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2	protein O-mannosyltransferase 2	protein-coding
190764	chr6	489001	489530	+	0	NA	intron (NM_018303, intron 26 of 27)	intron (NM_018303, intron 26 of 27)	97513	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
88885	chr16	87723171	87723530	+	0	NA	intron (NM_001351937, intron 7 of 11)	intron (NM_001351937, intron 7 of 11)	42636	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
39364	chr11	59565651	59566590	+	0	NA	Intergenic	Intergenic	29038	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
151874	chr22	18727551	18727900	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-6210	NR_165635	642643		NR_136561	ENSG00000182824	FAM230E	LINC01662	family with sequence similarity 230 member E	ncRNA
94202	chr17	28581321	28581800	+	0	NA	intron (NM_006461, intron 15 of 23)	intron (NM_006461, intron 15 of 23)	-4665	NM_005165	230		NM_005165	ENSG00000109107	ALDOC	ALDC	aldolase, fructose-bisphosphate C	protein-coding
27472	chr10	32042051	32042350	+	0	NA	intron (NM_004521, intron 2 of 25)	intron (NM_004521, intron 2 of 25)	14225	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
201960	chr6	152157671	152157830	+	0	NA	intron (NM_033071, intron 130 of 145)	intron (NM_033071, intron 130 of 145)	10537	NM_001347702	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
785	chr1	1535851	1536730	+	0	NA	intron (NM_001114748, intron 2 of 3)	intron (NM_001114748, intron 2 of 3)	4334	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
34301	chr10	131978871	131979030	+	0	NA	intron (NM_004052, intron 1 of 5)	intron (NM_004052, intron 1 of 5)	3063	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
194152	chr6	32039051	32039350	+	0	NA	exon (NM_000500, exon 3 of 10)	exon (NM_000500, exon 3 of 10)	785	NM_000500	1589		NM_000500	ENSG00000231852	CYP21A2	CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B	cytochrome P450 family 21 subfamily A member 2	protein-coding
232757	chr9	136667001	136667630	+	0	NA	intron (NM_201446, intron 1 of 8)	intron (NM_201446, intron 1 of 8)	1547	NM_201446	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
147371	chr20	58409801	58410000	+	0	NA	intron (NM_001195677, intron 1 of 2)	intron (NM_001195677, intron 1 of 2)	20671	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
82041	chr16	12321501	12321830	+	0	NA	intron (NM_032167, intron 15 of 20)	intron (NM_032167, intron 15 of 20)	344931	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
102759	chr17	76278571	76278730	+	0	NA	intron (NM_032134, intron 14 of 18)	intron (NM_032134, intron 14 of 18)	13302	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
34972	chr11	500001	500530	+	0	NA	intron (NM_203389, intron 3 of 9).2	intron (NM_203389, intron 3 of 9).2	6503	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
219125	chr8	66029701	66030380	+	0	NA	intron (NR_146171, intron 1 of 6)	L3|LINE|CR1	8487	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
160584	chr3	31132171	31132400	+	0	NA	Intergenic	Intergenic	29502	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
136942	chr2	190316421	190317180	+	0	NA	intron (NM_198047, intron 1 of 12)	intron (NM_198047, intron 1 of 12)	3026	NM_198047	26275		NM_014362	ENSG00000198130	HIBCH	HIBYLCOAH	3-hydroxyisobutyryl-CoA hydrolase	protein-coding
157845	chr22	48241771	48242130	+	0	NA	Intergenic	Intergenic	-32414	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	ncRNA
41636	chr11	66477901	66478330	+	0	NA	TTS (NM_001243135)	TTS (NM_001243135)	2134	NR_120586	101928069		NR_120586	ENSG00000255517	DPP3-DT	-	DPP3 divergent transcript	ncRNA
228333	chr9	98794601	98795100	+	0	NA	intron (NM_173551, intron 1 of 14)	MER5A|DNA|hAT-Charlie	1705	NM_173551	203286		NM_173551	ENSG00000165138	ANKS6	ANKRD14|NPHP16|PKDR1|SAMD6	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding
233533	chrX	225971	226130	+	0	NA	Intergenic	Intergenic	-50306	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
98832	chr17	48423121	48423380	+	0	NA	intron (NM_001075099, intron 1 of 12)	L1M6|LINE|L1	6964	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
214282	chr7	149038001	149038600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-9795	NM_004911	9601		NM_004911	ENSG00000155660	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A member 4	protein-coding
157370	chr22	44707271	44707830	+	0	NA	intron (NM_181334, intron 1 of 14)	intron (NM_181334, intron 1 of 14)	5346	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
26082	chr10	13114271	13114430	+	0	NA	intron (NM_001008212, intron 5 of 14)	intron (NM_001008212, intron 5 of 14)	14187	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
192834	chr6	27138171	27138330	+	0	NA	TTS (NM_080593)	TTS (NM_080593)	-1032	NM_003495	8294		NM_003495	ENSG00000276180	H4C9	H4-16|H4/m|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4FM|H4M|HIST1H4I|TEBIVANED4|TEVANED4	H4 clustered histone 9	protein-coding
206244	chr7	29193121	29193400	+	0	NA	intron (NM_001371255, intron 1 of 18)	intron (NM_001371255, intron 1 of 18)	-1245	NM_001293070	1124		NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
76510	chr15	74978501	74978780	+	0	NA	Intergenic	L2a|LINE|L2	-16923	NR_033660	192683		NM_138967	ENSG00000198794	SCAMP5	-	secretory carrier membrane protein 5	protein-coding
229947	chr9	126675971	126676380	+	0	NA	intron (NM_001174147, intron 2 of 7)	L2a|LINE|L2	62247	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
218053	chr8	38856151	38856750	+	0	NA	Intergenic	Intergenic	-44896	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
75485	chr15	66290621	66291080	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-2459	NM_133375	115752		NM_133375	ENSG00000166938	DIS3L	DIS3L1	DIS3 like exosome 3'-5' exoribonuclease	protein-coding
214913	chr7	151468621	151468930	+	0	NA	intron (NM_005614, intron 7 of 7)	L2a|LINE|L2	-27962	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
184841	chr5	111510321	111510630	+	0	NA	intron (NR_131754, intron 1 of 4)	intron (NR_131754, intron 1 of 4)	-1751	NR_040093	100505678		NR_040093	ENSG00000246859	STARD4-AS1	-	STARD4 antisense RNA 1	ncRNA
79140	chr16	234221	236230	+	0	NA	intron (NM_001284497, intron 1 of 12)	CpG	404	NM_001284497	83986		NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding
100755	chr17	63954121	63955100	+	0	NA	intron (NM_000334, intron 13 of 23)	intron (NM_000334, intron 13 of 23)	18308	NM_000334	6329		NM_000334	ENSG00000007314	SCN4A	CMS16|CMYP22A|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium voltage-gated channel alpha subunit 4	protein-coding
15103	chr1	148575521	148576180	+	0	NA	intron (NM_015383, intron 15 of 65)	intron (NM_015383, intron 15 of 65)	19867	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
164215	chr3	56915971	56916980	+	0	NA	promoter-TSS (NM_001289698)	promoter-TSS (NM_001289698)	-39	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
3698	chr1	16544121	16544880	+	0	NA	Intergenic	Intergenic	-4414	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
80427	chr16	2635071	2635430	+	0	NA	Intergenic	CpG	-3732	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
113081	chr19	8260871	8261530	+	0	NA	intron (NM_024552, intron 10 of 11)	intron (NM_024552, intron 10 of 11)	47158	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
203580	chr7	914901	916250	+	0	NA	intron (NM_006869, intron 4 of 10)	intron (NM_006869, intron 4 of 10)	5314	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
14780	chr1	146053671	146054080	+	0	NA	intron (NR_125968, intron 1 of 2)	L1P2|LINE|L1	1279	NR_125967	101928979		NR_125967		LINC01719	-	long intergenic non-protein coding RNA 1719	ncRNA
18126	chr1	160733501	160734300	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-5157	NM_001282594	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
67360	chr14	69716151	69717080	+	0	NA	Intergenic	Intergenic	-50527	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
63646	chr14	20956171	20956600	+	0	NA	TTS (NM_002934)	TTS (NM_002934)	898	NM_002934	6036		NM_002934	ENSG00000169385	RNASE2	EDN|RAF3|RNS2	ribonuclease A family member 2	protein-coding
147908	chr20	62897601	62898250	+	0	NA	intron (NM_001193369, intron 6 of 15)	intron (NM_001193369, intron 6 of 15)	-15022	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
50067	chr12	44804171	44804330	+	0	NA	intron (NM_001145108, intron 3 of 19)	intron (NM_001145108, intron 3 of 19)	71411	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
46499	chr11	128365101	128365380	+	0	NA	Intergenic	Intergenic	156474	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
65040	chr14	39183221	39183900	+	0	NA	TTS (NM_002687)	TTS (NM_002687)	8306	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
2407	chr1	9562521	9563130	+	0	NA	intron (NM_032315, intron 2 of 6)	AluSp|SINE|Alu	23360	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
218359	chr8	43061851	43062350	+	0	NA	intron (NM_002027, intron 2 of 8)	MER57E1|LTR|ERV1	5777	NM_002027	2339		NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, subunit alpha	protein-coding
136024	chr2	172446171	172446950	+	0	NA	intron (NM_001365530, intron 1 of 25)	L2b|LINE|L2	18974	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
138748	chr2	215171201	215171600	+	0	NA	Intergenic	Intergenic	-32774	NM_173076	26154		NM_015657	ENSG00000144452	ABCA12	ARCI4A|ARCI4B|ICR2B|LI2	ATP binding cassette subfamily A member 12	protein-coding
40503	chr11	64267101	64267780	+	0	NA	exon (NM_001184883, exon 29 of 29)	exon (NM_001184883, exon 29 of 29)	-3091	NM_001378076	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
72367	chr15	31355051	31355800	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	28590	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
157527	chr22	45414951	45415250	+	0	NA	intron (NM_015653, intron 2 of 6)	AluJr|SINE|Alu	1407	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
35567	chr11	1670501	1671550	+	0	NA	Intergenic	Intergenic	5426	NR_026643	387742		NM_001014374	ENSG00000205866	FAM99A	-	family with sequence similarity 99 member A	ncRNA
209774	chr7	87312221	87312580	+	0	NA	Intergenic	Intergenic	33092	NR_015381	11257		NM_007233	ENSG00000182165	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1|TP53LC12	TP53 target 1	ncRNA
133667	chr2	127069421	127069930	+	0	NA	intron (NM_139345, intron 5 of 15)	intron (NM_139345, intron 5 of 15)	12390	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
176407	chr4	89057071	89057250	+	0	NA	promoter-TSS (NM_014883)	promoter-TSS (NM_014883)	25	NM_014883	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
228039	chr9	96007401	96007800	+	0	NA	intron (NM_001375291, intron 18 of 18)	L2a|LINE|L2	14211	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
203669	chr7	1003751	1004450	+	0	NA	intron (NR_156697, intron 2 of 4)	intron (NR_156697, intron 2 of 4)	18926	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
127883	chr2	46064121	46064200	+	0	NA	intron (NM_005400, intron 10 of 14)	AluSz|SINE|Alu	-233247	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
19207	chr1	172442021	172442550	+	0	NA	exon (NM_002642, exon 2 of 2)	exon (NM_002642, exon 2 of 2)	1784	NM_153747	5279		NM_002642	ENSG00000135845	PIGC	GPI2|GPIBD16|MRT62	phosphatidylinositol glycan anchor biosynthesis class C	protein-coding
147658	chr20	62236271	62237100	+	0	NA	TTS (NR_160555)	TTS (NR_160555)	-1836	NM_001363878	9885		NM_014835	ENSG00000130703	OSBPL2	DFNA67|DNFA67|ORP-2|ORP2	oxysterol binding protein like 2	protein-coding
131856	chr2	98694751	98694850	+	0	NA	intron (NM_012214, intron 2 of 15)	AluSx|SINE|Alu	-31327	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
67395	chr14	69789301	69789880	+	0	NA	intron (NM_003049, intron 1 of 4)	L1MB7|LINE|L1	7651	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
168133	chr3	138937401	138937800	+	0	NA	non-coding (NR_121649, exon 3 of 3)	non-coding (NR_121649, exon 3 of 3)	6420	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
145832	chr20	45812071	45813550	+	0	NA	promoter-TSS (NM_181801)	promoter-TSS (NM_181801)	166	NM_007019	11065		NM_007019	ENSG00000175063	UBE2C	UBCH10|dJ447F3.2	ubiquitin conjugating enzyme E2 C	protein-coding
230458	chr9	128194471	128195200	+	0	NA	intron (NM_001131015, intron 1 of 17)	AluSq2|SINE|Alu	-2731	NM_001257975	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
113200	chr19	8446451	8446780	+	0	NA	intron (NM_031203, intron 1 of 16)	AluJo|SINE|Alu	1640	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
106229	chr18	11908231	11909250	+	0	NA	promoter-TSS (NM_001319154)	promoter-TSS (NM_001319154)	-423	NR_040242	65258		NM_023075	ENSG00000154889	MPPE1	Cdc1|PGAP5	metallophosphoesterase 1	protein-coding
236227	chrX	65710721	65711150	+	0	NA	intron (NM_002444, intron 1 of 12)	AluSz6|SINE|Alu	43281	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
117421	chr19	19634801	19635550	+	0	NA	exon (NM_001288999, exon 15 of 20)	exon (NM_001288999, exon 15 of 20)	-6955	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
191598	chr6	12050221	12050900	+	0	NA	intron (NM_002114, intron 2 of 8)	AluY|SINE|Alu	38248	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
68936	chr14	91384901	91385900	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	32420	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
236343	chrX	70033551	70033650	+	0	NA	intron (NM_001399, intron 7 of 7)	intron (NM_001399, intron 7 of 7)	10743	NR_037494	100500887		NR_037494	ENSG00000211991	MIR676	hsa-mir-676|mir-676	microRNA 676	ncRNA
124185	chr19	56155201	56155400	+	0	NA	intron (NM_018337, intron 3 of 4)	MER77|LTR|ERVL	14013	NM_001253792	55311		NM_018337	ENSG00000167685	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
137473	chr2	197075571	197076480	+	0	NA	intron (NR_160034, intron 16 of 28)	intron (NR_160034, intron 16 of 28)	-121966	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
193986	chr6	31739301	31741130	+	0	NA	5' UTR (NM_002441, exon 1 of 25)	5' UTR (NM_002441, exon 1 of 25)	210	NM_172166	4439		NM_002441	ENSG00000204410	MSH5	G7|MUTSH5|NG23|POF13|SPGF74	mutS homolog 5	protein-coding
149755	chr21	34635371	34635680	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-20412	NM_004414	1827		NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
121233	chr19	46641301	46641700	+	0	NA	Intergenic	L1MB8|LINE|L1	-6818	NM_033258	94235		NM_033258	ENSG00000167414	GNG8	HG3E	G protein subunit gamma 8	protein-coding
72678	chr15	38547571	38548000	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	17029	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
54967	chr12	96295601	96295830	+	0	NA	intron (NM_002595, intron 9 of 16)	intron (NM_002595, intron 9 of 16)	40217	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
58552	chr12	132290471	132290830	+	0	NA	intron (NM_001122636, intron 1 of 10)	intron (NM_001122636, intron 1 of 10)	15259	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
2097	chr1	7975151	7975550	+	0	NA	intron (NM_007262, intron 5 of 6)	intron (NM_007262, intron 5 of 6)	13639	NM_007262	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
129222	chr2	68244301	68244700	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	8032	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
59500	chr13	26749351	26749450	+	0	NA	Intergenic	(C)n|Simple_repeat|Simple_repeat	11386	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
180876	chr5	33588771	33588930	+	0	NA	intron (NM_030955, intron 17 of 23)	intron (NM_030955, intron 17 of 23)	147885	NM_152295	6897		NM_152295	ENSG00000113407	TARS1	TARS|TTD7|ThrRS	threonyl-tRNA synthetase 1	protein-coding
128932	chr2	64530851	64530950	+	0	NA	intron (NM_203437, intron 1 of 9)	AluSx1|SINE|Alu	5387	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
102931	chr17	76588021	76588480	+	0	NA	Intergenic	Intergenic	-2390	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
209673	chr7	79976401	79977100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-158081	NM_002069	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
95397	chr17	35924121	35924480	+	0	NA	intron (NR_028000, intron 2 of 4)	intron (NR_028000, intron 2 of 4)	5999	NR_028000	201299		NM_145654	ENSG00000278023	RDM1	RAD52B	RAD52 motif containing 1	protein-coding
39928	chr11	62531901	62532700	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	13364	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
154392	chr22	35299021	35300940	+	0	NA	promoter-TSS (NM_005488)	promoter-TSS (NM_005488)	86	NR_156428	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
227515	chr9	91364001	91364400	+	0	NA	Intergenic	MER52C|LTR|ERV1	-2231	NM_001306190	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
58044	chr12	124461351	124462050	+	0	NA	intron (NM_001077261, intron 7 of 47)	intron (NM_001077261, intron 7 of 47)	105912	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
114312	chr19	11964641	11966030	+	0	NA	intron (NM_001367172, intron 1 of 3)	CpG	295	NM_001367172	284390		NM_001012753	ENSG00000197054	ZNF763	ZNF|ZNF440L	zinc finger protein 763	protein-coding
201648	chr6	149476971	149477130	+	0	NA	intron (NM_207360, intron 1 of 5)	L1M5|LINE|L1	7964	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
208445	chr7	66919501	66919700	+	0	NA	Intergenic	Intergenic	-1625	NM_017994	55069		NM_017994	ENSG00000106609	TMEM248	C7orf42	transmembrane protein 248	protein-coding
54836	chr12	94988671	94989030	+	0	NA	intron (NM_001258338, intron 2 of 2)	MER48|LTR|ERV1	14847	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
59127	chr13	21377171	21377730	+	0	NA	intron (NM_153251, intron 11 of 11)	CpG	-32591	NR_103841	100652865		NR_103840	ENSG00000224429	LINC00539	LINC00422	long intergenic non-protein coding RNA 539	ncRNA
8415	chr1	40422801	40423000	+	0	NA	3' UTR (NM_001198979, exon 10 of 10)	3' UTR (NM_001198979, exon 10 of 10)	26100	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
213903	chr7	142482271	142483630	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	8423	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
114037	chr19	10956151	10956680	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4615	NM_001374457	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
124357	chr19	58349801	58350000	+	0	NA	intron (NM_130786, intron 6 of 7)	intron (NM_130786, intron 6 of 7)	-2070	NR_015380	503538		NR_015380	ENSG00000268895	A1BG-AS1	A1BG-AS|A1BGAS|NCRNA00181	A1BG antisense RNA 1	ncRNA
96522	chr17	40339971	40340300	+	0	NA	TTS (NR_110861)	TTS (NR_110861)	-2031	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
175840	chr4	78656771	78657530	+	0	NA	intron (NR_038306, intron 2 of 2)	intron (NR_038306, intron 2 of 2)	11156	NR_038304	100505702		NR_038303		LINC01094	CTEPHA1	long intergenic non-protein coding RNA 1094	ncRNA
181489	chr5	42966071	42966330	+	0	NA	Intergenic	AluJr|SINE|Alu	27133	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
137860	chr2	200825401	200825980	+	0	NA	3' UTR (NM_001321693, exon 11 of 11)	3' UTR (NM_001321693, exon 11 of 11)	13304	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
68867	chr14	91309471	91309830	+	0	NA	intron (NM_001080414, intron 16 of 29)	intron (NM_001080414, intron 16 of 29)	-55770	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
39804	chr11	61970951	61971300	+	0	NA	Intergenic	Intergenic	-3491	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
155169	chr22	37696551	37698230	+	0	NA	intron (NM_001039141, intron 1 of 23)	intron (NM_001039141, intron 1 of 23)	342	NM_001039141	11078		NM_007032	ENSG00000100106	TRIOBP	DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
33611	chr10	119575451	119576450	+	0	NA	intron (NM_001323968, intron 12 of 12)	intron (NM_001323968, intron 12 of 12)	21079	NM_001323965	7073		NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
34861	chr11	336701	336900	+	0	NA	Intergenic	Intergenic	-15940	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
86346	chr16	66512051	66512150	+	0	NA	intron (NM_001271935, intron 7 of 7)	intron (NM_001271935, intron 7 of 7)	-35698	NR_109960	101927726		NR_109960	ENSG00000261656	BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
175375	chr4	70667921	70668180	+	0	NA	Intergenic	Intergenic	-1542	NM_144646	3512		NM_144646	ENSG00000132465	JCHAIN	IGCJ|IGJ|JCH	joining chain of multimeric IgA and IgM	protein-coding
221930	chr8	129872271	129872430	+	0	NA	intron (NM_001353280, intron 4 of 12)	intron (NM_001353280, intron 4 of 12)	67461	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
236465	chrX	71583771	71584330	+	0	NA	intron (NM_052957, intron 2 of 12)	AluSz|SINE|Alu	6026	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
58206	chr12	126771901	126773180	+	0	NA	promoter-TSS (NR_033878)	promoter-TSS (NR_033878)	-278	NR_033878	387895		NR_033878		LINC00944	DMDRMR	long intergenic non-protein coding RNA 944	ncRNA
27900	chr10	41887801	41888080	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	480105	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
214380	chr7	149769421	149769880	+	0	NA	intron (NM_207336, intron 3 of 4)	L2a|LINE|L2	3938	NM_207336	168544		NM_207336	ENSG00000181444	ZNF467	EZI|Zfp467	zinc finger protein 467	protein-coding
143999	chr20	33004871	33005280	+	0	NA	promoter-TSS (NM_080675)	promoter-TSS (NM_080675)	-642	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
55223	chr12	101821251	101821350	+	0	NA	intron (NM_024312, intron 1 of 20)	L2b|LINE|L2	9659	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
120859	chr19	45527751	45528480	+	0	NA	3' UTR (NM_001017989, exon 2 of 2)	3' UTR (NM_001017989, exon 2 of 2)	20636	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
213653	chr7	139774521	139774780	+	0	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	3348	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
157272	chr22	44026621	44027500	+	0	NA	intron (NM_001243386, intron 1 of 11)	intron (NM_001243386, intron 1 of 11)	756	NM_001243386	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
40605	chr11	64643271	64643430	+	0	NA	5' UTR (NM_138734, exon 1 of 7)	5' UTR (NM_138734, exon 1 of 7)	195	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
208363	chr7	66591621	66593150	+	0	NA	promoter-TSS (NR_111973)	promoter-TSS (NR_111973)	22	NR_111978	493754		NR_002933	ENSG00000291136	RABGEF1P1	GS1-124K5.11	RABGEF1 pseudogene 1	pseudo
34168	chr10	128080651	128080950	+	0	NA	intron (NM_001323354, intron 19 of 19)	intron (NM_001323354, intron 19 of 19)	-18375	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
188419	chr5	154193051	154193350	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	2467	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
21812	chr1	207298251	207298350	+	0	NA	Intergenic	L1PA10|LINE|L1	-23378	NM_001300903	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
34400	chr10	132385851	132386030	+	0	NA	Intergenic	Intergenic	-11260	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
131364	chr2	96195851	96196030	+	0	NA	intron (NM_001385622, intron 1 of 7)	AluSg|SINE|Alu	-12476	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
75218	chr15	64848471	64848980	+	0	NA	exon (NM_025201, exon 2 of 6)	exon (NM_025201, exon 2 of 6)	6810	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
80739	chr16	3137901	3138100	+	0	NA	intron (NM_001134655, intron 2 of 5)	intron (NM_001134655, intron 2 of 5)	2971	NM_004220	7760		NM_004220	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
199392	chr6	116370151	116371720	+	0	NA	promoter-TSS (NM_001322941)	promoter-TSS (NM_001322941)	-12	NM_001322941	29940		NM_013352	ENSG00000111817	DSE	DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
132311	chr2	105325551	105325850	+	0	NA	intron (NM_001328646, intron 1 of 11)	L3|LINE|CR1	3956	NR_137328	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
81973	chr16	11876271	11876830	+	0	NA	intron (NM_001130007, intron 12 of 14)	AluSx1|SINE|Alu	-25008	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
146852	chr20	51436801	51437000	+	0	NA	intron (NM_173091, intron 6 of 9)	intron (NM_173091, intron 6 of 9)	16077	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
103512	chr17	78437071	78437230	+	0	NA	intron (NM_173628, intron 74 of 80)	intron (NM_173628, intron 74 of 80)	-47760	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
236572	chrX	72572871	72573330	+	0	NA	promoter-TSS (NM_001166418)	promoter-TSS (NM_001166418)	3	NM_001166420	55869		NM_018486	ENSG00000147099	HDAC8	CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS	histone deacetylase 8	protein-coding
3055	chr1	12163371	12163930	+	0	NA	Intergenic	Intergenic	-3293	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
106768	chr18	23665321	23665780	+	0	NA	Intergenic	Intergenic	-2639	NM_001308238	147463		NM_173505	ENSG00000154065	ANKRD29	-	ankyrin repeat domain 29	protein-coding
98549	chr17	47681871	47682030	+	0	NA	intron (NM_002265, intron 21 of 21)	AluJr|SINE|Alu	-13314	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
9931	chr1	54480121	54480780	+	0	NA	Intergenic	Intergenic	-67778	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
165478	chr3	99789421	99789730	+	0	NA	intron (NM_001850, intron 3 of 4)	intron (NM_001850, intron 3 of 4)	-28287	NM_032359	84319		NM_032359	ENSG00000184220	CMSS1	C3orf26	cms1 ribosomal small subunit homolog	protein-coding
26526	chr10	21496501	21497400	+	0	NA	promoter-TSS (NR_031736)	promoter-TSS (NR_031736)	-309	NR_031736	100302129		NR_031736	ENSG00000222071	MIR1915	MIRN1915|hsa-mir-1915	microRNA 1915	ncRNA
35428	chr11	1435871	1436830	+	0	NA	intron (NM_001256630, intron 2 of 19)	intron (NM_001256630, intron 2 of 19)	25198	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
160532	chr3	30657601	30659550	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	51974	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
129577	chr2	70042451	70042750	+	0	NA	intron (NR_033872, intron 6 of 10)	intron (NR_033872, intron 6 of 10)	44415	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
5505	chr1	25767751	25768050	+	0	NA	intron (NM_001385185, intron 6 of 10)	(CA)n|Simple_repeat|Simple_repeat	-32293	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
32282	chr10	102116371	102116530	+	0	NA	intron (NM_001321612, intron 1 of 10)	AluSx|SINE|Alu	-1448	NM_003893	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
192882	chr6	27479401	27480180	+	0	NA	Intergenic	Intergenic	-6672	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
214234	chr7	148865901	148866500	+	0	NA	intron (NM_001203248, intron 1 of 19)	intron (NM_001203248, intron 1 of 19)	17285	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
88770	chr16	87160971	87161330	+	0	NA	Intergenic	L1MB7|LINE|L1	-50965	NR_110939	101928708		NR_110939	ENSG00000261095	LOC101928708	-	uncharacterized LOC101928708	ncRNA
92381	chr17	8243601	8244930	+	0	NA	intron (NM_025099, intron 1 of 22)	intron (NM_025099, intron 1 of 22)	3791	NR_046431	80169		NM_025099	ENSG00000178971	CTC1	AAF-132|AAF132|C17orf68|CRMCC|tmp494178	CST telomere replication complex component 1	protein-coding
213754	chr7	140476901	140477600	+	0	NA	intron (NM_001291663, intron 1 of 6)	intron (NM_001291663, intron 1 of 6)	2255	NM_013446	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
80568	chr16	2853751	2854050	+	0	NA	exon (NM_022119, exon 5 of 6)	exon (NM_022119, exon 5 of 6)	4270	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
91816	chr17	7091471	7091780	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-11374	NM_001330070	10462		NM_006344	ENSG00000132514	CLEC10A	CD301|CLECSF13|CLECSF14|HML|HML2|MGL	C-type lectin domain containing 10A	protein-coding
223701	chr8	144434721	144434980	+	0	NA	promoter-TSS (NR_109770)	promoter-TSS (NR_109770)	-318	NR_109770	100287098		NR_109770		TONSL-AS1	-	TONSL antisense RNA 1	ncRNA
48612	chr12	10364501	10365580	+	0	NA	intron (NR_120430, intron 1 of 3)	HERV15-int|LTR|ERV1	1271	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
169626	chr3	171284371	171284730	+	0	NA	intron (NM_001161560, intron 2 of 31)	LTR16A|LTR|ERVL	175855	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
73956	chr15	51750971	51752230	+	0	NA	promoter-TSS (NM_001143917)	promoter-TSS (NM_001143917)	3	NM_014548	29767		NM_014548	ENSG00000128872	TMOD2	N-TMOD|NTMOD	tropomodulin 2	protein-coding
62751	chr13	106600451	106600750	+	0	NA	Intergenic	L1ME4a|LINE|L1	-17210	NR_051977	283483		NR_051977	ENSG00000272274	ARGLU1-DT	LINC00551	ARGLU1 divergent transcript	ncRNA
60844	chr13	45466901	45467100	+	0	NA	intron (NM_031431, intron 1 of 22)	L2a|LINE|L2	2061	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
113302	chr19	8563021	8563280	+	0	NA	intron (NM_012335, intron 1 of 27)	AluSx1|SINE|Alu	14292	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
215672	chr8	699901	700350	+	0	NA	intron (NM_207332, intron 2 of 5)	CpG	31099	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
232000	chr9	133351921	133352580	+	0	NA	TTS (NM_000972).2	TTS (NM_000972).2	1404	NR_000016	26813		NR_000016	ENSG00000252542	SNORD36C	RNU36C|U36c	small nucleolar RNA, C/D box 36C	snoRNA
152138	chr22	19974151	19976100	+	0	NA	intron (NM_001670, intron 11 of 19)	L2b|LINE|L2	11372	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
85750	chr16	56732771	56732930	+	0	NA	intron (NM_014669, intron 1 of 21)	L2c|LINE|L2	2721	NM_014669	9688		NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
101263	chr17	66327351	66327650	+	0	NA	intron (NM_002737, intron 2 of 16)	AluSz6|SINE|Alu	24887	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
106796	chr18	23901021	23901280	+	0	NA	exon (NM_001127718, exon 10 of 37)	exon (NM_001127718, exon 10 of 37)	28130	NM_001127718	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
66438	chr14	61533271	61534130	+	0	NA	intron (NM_006255, intron 12 of 13)	MIR|SINE|MIR	36494	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
5807	chr1	26582671	26583430	+	0	NA	Intergenic	Intergenic	28508	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
238264	chrX	148380051	148380910	+	0	NA	Intergenic	LTR35B|LTR|ERV1	-120137	NM_001169124	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
144291	chr20	34701951	34702550	+	0	NA	Intergenic	L2c|LINE|L2	-2094	NM_021202	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
93413	chr17	18382651	18383480	+	0	NA	exon (NM_001145127, exon 7 of 11).2	exon (NM_001145127, exon 7 of 11).2	5287	NM_001145127	645027		NM_001145127	ENSG00000214860	EVPLL	-	envoplakin like	protein-coding
87642	chr16	74560921	74561180	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	46064	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
125758	chr2	23313071	23313230	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-72029	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
112664	chr19	6942771	6943130	+	0	NA	Intergenic	Intergenic	47896	NR_024075	326342		NM_001080498		ADGRE4P	EMR4|EMR4P|FIRE|GPR127|PGR16	adhesion G protein-coupled receptor E4, pseudogene	pseudo
20944	chr1	202228151	202228400	+	0	NA	intron (NM_021636, intron 3 of 17)	intron (NM_021636, intron 3 of 17)	14120	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
141946	chr20	1278221	1278480	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	12056	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
17566	chr1	156818051	156818430	+	0	NA	intron (NM_001007792, intron 1 of 16)	L2c|LINE|L2	-1392	NM_001161441	9047		NM_003975	ENSG00000027869	SH2D2A	F2771|SCAP|TSAD|VRAP	SH2 domain containing 2A	protein-coding
13764	chr1	117048921	117049980	+	0	NA	intron (NR_110786, intron 2 of 3)	intron (NR_110786, intron 2 of 3)	10040	NR_110786	101929099		NR_110786	ENSG00000236137	CD101-AS1	-	CD101 antisense RNA 1	ncRNA
129320	chr2	68722871	68723330	+	0	NA	Intergenic	Intergenic	-11711	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
186306	chr5	134573701	134573900	+	0	NA	intron (NM_015288, intron 10 of 10)	intron (NM_015288, intron 10 of 10)	47692	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
191178	chr6	5035571	5035730	+	0	NA	intron (NR_126018, intron 1 of 1)	(TCCT)n|Simple_repeat|Simple_repeat	5678	NR_126018	100129461		NR_126015	ENSG00000272142	LYRM4-AS1	-	LYRM4 antisense RNA 1	ncRNA
197550	chr6	79077801	79079230	+	0	NA	promoter-TSS (NM_017934)	promoter-TSS (NM_017934)	-261	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
154290	chr22	31748551	31748900	+	0	NA	intron (NM_173566, intron 1 of 8)	intron (NM_173566, intron 1 of 8)	1407	NM_173566	253143		NM_173566	ENSG00000183530	PRR14L	C22orf30	proline rich 14 like	protein-coding
114210	chr19	11438321	11438580	+	0	NA	intron (NM_001001329, intron 5 of 17)	intron (NM_001001329, intron 5 of 17)	-2668	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
104494	chr17	81162971	81163130	+	0	NA	intron (NM_001080395, intron 1 of 13)	intron (NM_001080395, intron 1 of 13)	-2457	NM_001354639	388428		NM_207389	ENSG00000225180	PVALEF	AATK-AS1	parvalbumin like EF-hand containing	protein-coding
14875	chr1	146458971	146459530	+	0	NA	Intergenic	Intergenic	-27082	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
59099	chr13	21142251	21143250	+	0	NA	intron (NM_005870, intron 2 of 3)	AluJo|SINE|Alu	2204	NM_001366643	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
199143	chr6	111721471	111722380	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	37206	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
94556	chr17	29610671	29611050	+	0	NA	intron (NM_152345, intron 8 of 14)	intron (NM_152345, intron 8 of 14)	7257	NM_001351302	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
122961	chr19	50778801	50779200	+	0	NA	Intergenic	L2a|LINE|L2	7160	NM_001384597	105372440		NM_001384597	ENSG00000261341	SMIM47	-	small integral membrane protein 47	protein-coding
108962	chr18	79523201	79525650	+	0	NA	intron (NM_172387, intron 9 of 9)	CpG	-54857	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
112763	chr19	7418971	7419130	+	0	NA	intron (NM_015318, intron 1 of 20)	intron (NM_015318, intron 1 of 20)	-20638	NM_001130955	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
121914	chr19	48416671	48417080	+	0	NA	intron (NM_000836, intron 8 of 13)	AluSx|SINE|Alu	23207	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
207606	chr7	44975651	44975750	+	0	NA	intron (NM_033054, intron 3 of 21)	intron (NM_033054, intron 3 of 21)	3315	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
145884	chr20	45949071	45949780	+	0	NA	intron (NM_022095, intron 25 of 27)	intron (NM_022095, intron 25 of 27)	14742	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
142413	chr20	3891071	3891300	+	0	NA	intron (NM_153640, intron 1 of 6)	AluJr|SINE|Alu	1369	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
174479	chr4	39867701	39867900	+	0	NA	intron (NM_001100399, intron 22 of 32)	intron (NM_001100399, intron 22 of 32)	110111	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
67800	chr14	73767451	73767750	+	0	NA	intron (NM_001043318, intron 1 of 11)	AluJr|SINE|Alu	-7297	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
107100	chr18	35051371	35052230	+	0	NA	intron (NR_046177, intron 1 of 6)	MIR|SINE|MIR	10387	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
74639	chr15	60811051	60811350	+	0	NA	intron (NM_134261, intron 1 of 10)	HAL1|LINE|L1	129631	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
79985	chr16	1812671	1813180	+	0	NA	intron (NM_001040427, intron 8 of 9)	L1M5|LINE|L1	13900	NM_005326	3029		NM_005326	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
118681	chr19	37903921	37904380	+	0	NA	intron (NM_031951, intron 1 of 5)	AluY|SINE|Alu	2444	NM_001291088	83889		NM_031951	ENSG00000171804	WDR87	NYD-SP11	WD repeat domain 87	protein-coding
53581	chr12	67692171	67692350	+	0	NA	Intergenic	Intergenic	37215	NR_110063	101927901		NR_110063	ENSG00000255970	LINC02421	-	long intergenic non-protein coding RNA 2421	ncRNA
61912	chr13	77693871	77694430	+	0	NA	Intergenic	(ATT)n|Simple_repeat|Simple_repeat	-3537	NM_001242868	122060		NM_144595	ENSG00000139737	SLAIN1	C13orf32	SLAIN motif family member 1	protein-coding
24044	chr1	235290071	235290300	+	0	NA	intron (NM_016374, intron 2 of 23)	L1ME4b|LINE|L1	-37031	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
228528	chr9	100472751	100474330	+	0	NA	5' UTR (NM_003692, exon 1 of 10)	5' UTR (NM_003692, exon 1 of 10)	391	NM_003692	8577		NM_003692	ENSG00000241697	TMEFF1	C9orf2|CT120.1|H7365|TR-1	transmembrane protein with EGF like and two follistatin like domains 1	protein-coding
233328	chr9	137435301	137435850	+	0	NA	intron (NM_198585, intron 7 of 8)	intron (NM_198585, intron 7 of 8)	5782	NM_198585	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
141690	chr2	241813051	241813150	+	0	NA	intron (NM_080741, intron 1 of 3).2	intron (NM_080741, intron 1 of 3).2	1704	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
232281	chr9	134438401	134438800	+	0	NA	3' UTR (NM_002957, exon 10 of 10)	3' UTR (NM_002957, exon 10 of 10)	32040	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
111611	chr19	4108521	4109980	+	0	NA	intron (NM_030662, intron 3 of 10)	intron (NM_030662, intron 3 of 10)	14872	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
207956	chr7	54775151	54775250	+	0	NA	intron (NR_110040, intron 1 of 2)	intron (NR_110040, intron 1 of 2)	15887	NR_110040	100996654		NR_110040	ENSG00000234707	SEC61G-DT	-	SEC61G divergent transcript	ncRNA
151691	chr22	17218821	17220130	+	0	NA	promoter-TSS (NM_001282225)	promoter-TSS (NM_001282225)	-40	NM_001282226	51816		NM_017424	ENSG00000093072	ADA2	ADGF|CECR1|IDGFL|PAN|SNEDS|VAIHS	adenosine deaminase 2	protein-coding
163205	chr3	50235171	50236490	+	0	NA	promoter-TSS (NM_001282618)	promoter-TSS (NM_001282618)	-374	NM_002070	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
159152	chr3	12721251	12721350	+	0	NA	Intergenic	Intergenic	37959	NM_001284407	55287		NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
122855	chr19	50480171	50480700	+	0	NA	intron (NM_206538, intron 4 of 6)	intron (NM_206538, intron 4 of 6)	-3587	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
67461	chr14	70823951	70824450	+	0	NA	Intergenic	AluJb|SINE|Alu	-14687	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
138067	chr2	201750651	201750750	+	0	NA	intron (NM_020919, intron 7 of 33)	L1ME4a|LINE|L1	30233	NM_001135745	57679		NM_020919	ENSG00000003393	ALS2	ALS2CR6|ALSJ|IAHSP|PLSJ	alsin Rho guanine nucleotide exchange factor ALS2	protein-coding
128984	chr2	64721101	64721300	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-67287	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
110833	chr19	2496151	2496250	+	0	NA	Intergenic	Intergenic	20073	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
223639	chr8	144339721	144340180	+	0	NA	Intergenic	L2|LINE|L2	-3468	NM_031309	83482		NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding
208069	chr7	56084821	56085080	+	0	NA	intron (NM_001258459, intron 4 of 10)	intron (NM_001258459, intron 4 of 10)	8002	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
24552	chr1	244861521	244861850	+	0	NA	intron (NM_031844, intron 3 of 13)	intron (NM_031844, intron 3 of 13)	2840	NM_004501	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
41102	chr11	65537301	65537830	+	0	NA	TTS (NM_001164266)	TTS (NM_001164266)	12482	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
4695	chr1	23101701	23101900	+	0	NA	intron (NM_033631, intron 3 of 4)	intron (NM_033631, intron 3 of 4)	57495	NR_036057	100422866		NR_036057	ENSG00000263793	MIR3115	mir-3115	microRNA 3115	ncRNA
28967	chr10	63243851	63244150	+	0	NA	intron (NM_001322252, intron 2 of 24)	L1MA4|LINE|L1	25223	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
139406	chr2	222424301	222424640	+	0	NA	promoter-TSS (NM_001320833)	promoter-TSS (NM_001320833)	-73	NM_001320833	130367		NM_152386	ENSG00000163082	SGPP2	SPP2|SPPase2	sphingosine-1-phosphate phosphatase 2	protein-coding
42506	chr11	70269001	70269200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1590	NM_001378006	8500		NM_003626	ENSG00000131626	PPFIA1	LIP.1|LIP1|LIPRIN	PTPRF interacting protein alpha 1	protein-coding
72807	chr15	40081751	40082050	+	0	NA	Intergenic	Intergenic	24186	NM_001003942	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
143124	chr20	23454421	23454680	+	0	NA	Intergenic	Intergenic	-1674	NM_130794	140880		NM_080830	ENSG00000125831	CST11	CST8L|CTES2|SC13|dJ322G13.6	cystatin 11	protein-coding
1792	chr1	6147271	6147630	+	0	NA	intron (NM_015557, intron 9 of 41)	intron (NM_015557, intron 9 of 41)	32871	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
36062	chr11	2953251	2953350	+	0	NA	intron (NM_001369382, intron 13 of 15).2	intron (NM_001369382, intron 13 of 15).2	10593	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
101686	chr17	68413451	68414280	+	0	NA	intron (NM_001278433, intron 1 of 10)	L1PA3|LINE|L1	242	NM_001278433	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
104006	chr17	80103101	80103880	+	0	NA	TTS (NR_134848)	TTS (NR_134848)	1909	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
126292	chr2	27209421	27210430	+	0	NA	intron (NR_028323, intron 2 of 16)	intron (NR_028323, intron 2 of 16)	2343	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
201180	chr6	143058801	143059280	+	0	NA	promoter-TSS (NM_001286587)	promoter-TSS (NM_001286587)	-323	NM_001286587	51390		NM_016108	ENSG00000146416	AIG1	AIG-1|dJ95L4.1	androgen induced 1	protein-coding
90263	chr17	975071	975530	+	0	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	4476	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
45977	chr11	121465751	121467380	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	14251	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
153671	chr22	29024721	29024800	+	0	NA	TTS (NR_046851)	TTS (NR_046851)	6716	NR_046851	100874123		NR_046851	ENSG00000177993	ZNRF3-AS1	-	ZNRF3 antisense RNA 1	ncRNA
55706	chr12	107903521	107903930	+	0	NA	promoter-TSS (NR_037629)	promoter-TSS (NR_037629)	46	NR_037629	728739		NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
117563	chr19	21202971	21203150	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	61020	NM_001319124	170959		NM_133473	ENSG00000196705	ZNF431	ZFP932	zinc finger protein 431	protein-coding
182272	chr5	57208401	57208930	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluSx1|SINE|Alu	-5409	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
7162	chr1	32245601	32246080	+	0	NA	Intergenic	L1ME3A|LINE|L1	-1382	NM_032648	84734		NM_032648	ENSG00000183615	FAM167B	C1orf90|DIORA-2	family with sequence similarity 167 member B	protein-coding
58723	chr12	132584571	132584930	+	0	NA	3' UTR (NM_001142641, exon 17 of 17)	3' UTR (NM_001142641, exon 17 of 17)	2753	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
100583	chr17	63425401	63426230	+	0	NA	3' UTR (NM_025185, exon 26 of 26)	3' UTR (NM_025185, exon 26 of 26)	14452	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
6686	chr1	29153571	29153730	+	0	NA	intron (NM_005626, intron 4 of 5)	AluSp|SINE|Alu	28250	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
208110	chr7	57358471	57358630	+	0	NA	Intergenic	Intergenic	-46217	NR_120505	100653233		NR_120505	ENSG00000260653	MIR3147HG	-	MIR3147 host gene	ncRNA
239297	chrY	14525251	14525550	+	0	NA	intron (NR_028319, intron 1 of 5)	intron (NR_028319, intron 1 of 5)	826	NR_028319	22829		NM_014893	ENSG00000165246	NLGN4Y	HNL4Y	neuroligin 4 Y-linked	protein-coding
109299	chr19	563271	563430	+	0	NA	Intergenic	HERVIP10B3-int|LTR|ERV1	-7933	NM_198591	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
170471	chr3	185930871	185931430	+	0	NA	intron (NM_004593, intron 1 of 8)	intron (NM_004593, intron 1 of 8)	6864	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
29384	chr10	70093371	70094000	+	0	NA	intron (NM_018649, intron 4 of 8)	intron (NM_018649, intron 4 of 8)	39140	NM_032797	84883		NM_032797	ENSG00000042286	AIFM2	AMID|FSP1|PRG3	apoptosis inducing factor mitochondria associated 2	protein-coding
143670	chr20	31969471	31969630	+	0	NA	intron (NM_001011718, intron 1 of 2)	intron (NM_001011718, intron 1 of 2)	1399	NM_001011718	343702		NM_001011718	ENSG00000260903	XKR7	C20orf159|dJ310O13.4	XK related 7	protein-coding
108616	chr18	75847021	75847360	+	0	NA	Intergenic	L1HS|LINE|L1	-134787	NR_134646	100505853		NR_134646	ENSG00000261194	LINC01898	-	long intergenic non-protein coding RNA 1898	ncRNA
51920	chr12	53696521	53696780	+	0	NA	Intergenic	Intergenic	-20320	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
191062	chr6	3353551	3354300	+	0	NA	intron (NM_001382320, intron 1 of 1)	intron (NM_001382320, intron 1 of 1)	-29775	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
229453	chr9	121640201	121640400	+	0	NA	intron (NM_032552, intron 1 of 16)	intron (NM_032552, intron 1 of 16)	73198	NM_032552	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
31508	chr10	96696421	96696680	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	23964	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
230514	chr9	128291651	128292350	+	0	NA	Intergenic	AluY|SINE|Alu	15724	NM_001040011	375757		NM_001040011	ENSG00000175854	SWI5	C9orf119|SAE3	SWI5 homologous recombination repair protein	protein-coding
210203	chr7	99040221	99040830	+	0	NA	exon (NM_001199847, exon 13 of 18)	exon (NM_001199847, exon 13 of 18)	27360	NR_110102	101927550		NR_110102		LOC101927550	-	uncharacterized LOC101927550	ncRNA
139094	chr2	218885171	218885850	+	0	NA	intron (NM_025216, intron 2 of 3)	intron (NM_025216, intron 2 of 3)	4658	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
83683	chr16	28405771	28405930	+	0	NA	intron (NM_001199142, intron 1 of 21)	intron (NM_001199142, intron 1 of 21)	-1962	NM_001267574	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
52045	chr12	54012321	54012580	+	0	NA	3' UTR (NM_022658, exon 2 of 2)	3' UTR (NM_022658, exon 2 of 2)	3465	NM_022658	3224		NM_022658	ENSG00000037965	HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
162659	chr3	48904301	48905200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5868	NM_000387	788		NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	solute carrier family 25 member 20	protein-coding
6713	chr1	29239251	29239550	+	0	NA	intron (NM_133177, intron 1 of 30)	intron (NM_133177, intron 1 of 30)	2878	NM_133177	10076		NM_005704	ENSG00000060656	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	protein tyrosine phosphatase receptor type U	protein-coding
61657	chr13	73940871	73941030	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	192979	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
200815	chr6	137925171	137925530	+	0	NA	Intergenic	Intergenic	20450	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
238786	chrX	154374471	154375280	+	0	NA	promoter-TSS (NM_001456)	promoter-TSS (NM_001456)	-237	NM_001456	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
179274	chr4	176319201	176321750	+	0	NA	intron (NM_021928, intron 1 of 4)	CpG	509	NM_021928	60559		NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22|SPC22/23|SPC23|SPC3|YLR066W	signal peptidase complex subunit 3	protein-coding
193198	chr6	29746901	29747100	+	0	NA	intron (NR_026972, intron 2 of 5).3	(AC)n|Simple_repeat|Simple_repeat	2049	NR_026972	285830		NM_001003807	ENSG00000214922	HLA-F-AS1	-	HLA-F antisense RNA 1	ncRNA
149583	chr21	33259301	33259500	+	0	NA	intron (NM_001289128, intron 7 of 7)	Charlie29a|DNA|hAT-Charlie	6860	NR_038974	100288432		NR_038974		IL10RB-DT	IFNAR2-AS1|IL10RB-AS1	IL10RB divergent transcript	ncRNA
85270	chr16	48559471	48560130	+	0	NA	intron (NM_153029, intron 2 of 6)	MER57C2|LTR|ERV1	50380	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
146780	chr20	50915271	50915800	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-5744	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
58881	chr13	18297511	18297730	+	0	NA	Intergenic	(GCGGCA)n|Simple_repeat|Simple_repeat	102323	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
140299	chr2	232439101	232439800	+	0	NA	Intergenic	Intergenic	-16703	NM_001631	248		NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
156781	chr22	41899351	41899650	+	0	NA	non-coding (NR_103834, exon 17 of 22)	non-coding (NR_103834, exon 17 of 22)	-1444	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
185067	chr5	116136351	116136650	+	0	NA	intron (NM_016144, intron 5 of 6)	intron (NM_016144, intron 5 of 6)	51038	NM_001308080	51397		NM_016144	ENSG00000145781	COMMD10	PTD002	COMM domain containing 10	protein-coding
162909	chr3	49406301	49406600	+	0	NA	intron (NM_001313943, intron 1 of 5)	intron (NM_001313943, intron 1 of 5)	5526	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
134315	chr2	136049101	136049500	+	0	NA	Intergenic	Intergenic	-63616	NM_001293312	1615		NM_001349	ENSG00000115866	DARS1	DARS|HBSL|aspRS	aspartyl-tRNA synthetase 1	protein-coding
155237	chr22	37931901	37932100	+	0	NA	intron (NM_033386, intron 10 of 15)	intron (NM_033386, intron 10 of 15)	21601	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
23404	chr1	228272421	228272680	+	0	NA	intron (NM_001271223, intron 20 of 115)	intron (NM_001271223, intron 20 of 115)	-58886	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
58188	chr12	125064951	125066150	+	0	NA	5' UTR (NM_001319839, exon 1 of 17)	5' UTR (NM_001319839, exon 1 of 17)	115	NM_001319839	65985		NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
192750	chr6	26409251	26409550	+	0	NA	intron (NM_001145008, intron 4 of 9)	intron (NM_001145008, intron 4 of 9)	7125	NM_001145009	11119		NM_007048	ENSG00000026950	BTN3A1	BT3.1|BTF5|BTN3.1|CD277	butyrophilin subfamily 3 member A1	protein-coding
78718	chr15	98612721	98612980	+	0	NA	Intergenic	MIRc|SINE|MIR	-35689	NM_001291858	3480		NM_000875	ENSG00000140443	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin like growth factor 1 receptor	protein-coding
70345	chr14	101855771	101856380	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	46212	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
231716	chr9	131743901	131744980	+	0	NA	Intergenic	Intergenic	-4364	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
12950	chr1	110870951	110871330	+	0	NA	promoter-TSS (NM_001040033)	promoter-TSS (NM_001040033)	-59	NM_001040033	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
56077	chr12	110613501	110614500	+	0	NA	promoter-TSS (NM_001319682)	promoter-TSS (NM_001319682)	-129	NM_001319681	79600		NM_024549	ENSG00000204852	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
178028	chr4	139466751	139467530	+	0	NA	intron (NM_031296, intron 1 of 1)	AluSx1|SINE|Alu	13019	NM_031296	83452		NM_031296	ENSG00000172007	RAB33B	SMC2	RAB33B, member RAS oncogene family	protein-coding
176744	chr4	101419421	101419900	+	0	NA	Intergenic	Intergenic	71883	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
160655	chr3	31610771	31611300	+	0	NA	intron (NM_178862, intron 5 of 15)	intron (NM_178862, intron 5 of 15)	78110	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
48435	chr12	9693051	9693150	+	0	NA	exon (NM_001004419, exon 5 of 6)	exon (NM_001004419, exon 5 of 6)	23387	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
186581	chr5	138497671	138498150	+	0	NA	Intergenic	L1M4|LINE|L1	32431	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
33040	chr10	110843001	110843950	+	0	NA	Intergenic	L4_B_Mam|LINE|RTE-X	27429	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
89202	chr16	88599121	88599380	+	0	NA	intron (NM_144604, intron 5 of 17)	intron (NM_144604, intron 5 of 17)	28847	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
30194	chr10	74587201	74587650	+	0	NA	intron (NM_001369123, intron 7 of 9)	intron (NM_001369123, intron 7 of 9)	-58101	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
202819	chr6	159688821	159689300	+	0	NA	intron (NM_000636, intron 2 of 4)	intron (NM_000636, intron 2 of 4)	4181	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
132817	chr2	110561351	110561650	+	0	NA	intron (NM_001384362, intron 6 of 22)	AluSc|SINE|Alu	15400	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
193166	chr6	29696651	29696950	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-15648	NM_001109809	346171		NM_001109809	ENSG00000204644	ZFP57	C6orf40|TNDM1|ZNF698|bA145L22|bA145L22.2	ZFP57 zinc finger protein	protein-coding
124965	chr2	8685401	8686350	+	0	NA	Intergenic	CpG	3819	NM_002166	3398		NM_002166	ENSG00000115738	ID2	GIG8|ID2A|ID2H|bHLHb26	inhibitor of DNA binding 2	protein-coding
119108	chr19	39332401	39333080	+	0	NA	intron (NM_004877, intron 4 of 6)	AluSz|SINE|Alu	3303	NM_001301008	9535		NM_004877	ENSG00000130755	GMFG	GMF-GAMMA	glia maturation factor gamma	protein-coding
63567	chr14	20415701	20416480	+	0	NA	Intergenic	Intergenic	-2589	NM_001319035	7011		NM_007110	ENSG00000129566	TEP1	TLP1|TP1|TROVE1|VAULT2|p240	telomerase associated protein 1	protein-coding
177154	chr4	108134401	108134680	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	32257	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
57487	chr12	122083801	122084750	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	5519	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
142295	chr20	3244721	3244980	+	0	NA	Intergenic	Intergenic	-5660	NR_135000	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
10422	chr1	65430971	65431380	+	0	NA	intron (NM_001198681, intron 4 of 4)	intron (NM_001198681, intron 4 of 4)	10459	NM_001198681	54741		NM_017526	ENSG00000213625	LEPROT	LEPR|OB-RGRP|OBRGRP|VPS55	leptin receptor overlapping transcript	protein-coding
167862	chr3	134364021	134364850	+	0	NA	intron (NM_001278683, intron 5 of 9)	intron (NM_001278683, intron 5 of 9)	3427	NR_106885	102466744		NR_106885		MIR6827	hsa-mir-6827	microRNA 6827	ncRNA
44291	chr11	102316661	102318080	+	0	NA	promoter-TSS (NM_001165)	promoter-TSS (NM_001165)	-114	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
62271	chr13	98575901	98576600	+	0	NA	intron (NM_001286649, intron 1 of 9)	CpG	857	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
160905	chr3	33855371	33855700	+	0	NA	intron (NM_013374, intron 15 of 17)	intron (NM_013374, intron 15 of 17)	56905	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
35646	chr11	1845551	1846500	+	0	NA	Intergenic	Intergenic	5818	NM_001145841	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
135419	chr2	161138021	161138800	+	0	NA	intron (NM_133484, intron 1 of 3)	intron (NM_133484, intron 1 of 3)	1447	NM_004180	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
205417	chr7	16645401	16646750	+	0	NA	promoter-TSS (NM_020319)	promoter-TSS (NM_020319)	-59	NM_001159767	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
88250	chr16	82562401	82562600	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-64469	NM_001257	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
216195	chr8	11850421	11850880	+	0	NA	intron (NM_001384728, intron 5 of 10)	intron (NM_001384728, intron 5 of 10)	17437	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
187138	chr5	140521621	140521880	+	0	NA	intron (NM_020690, intron 24 of 35)	AluSx|SINE|Alu	-25912	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
34679	chr10	133359721	133360750	+	0	NA	Intergenic	Intergenic	-2216	NM_001301828	282969		NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
174446	chr4	39703571	39703930	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSc|SINE|Alu	5614	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
124851	chr2	7835701	7836000	+	0	NA	Intergenic	MSTB2|LTR|ERVL-MaLR	63805	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
116945	chr19	18850701	18851100	+	0	NA	intron (NM_001297549, intron 5 of 23)	intron (NM_001297549, intron 5 of 23)	18941	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
114804	chr19	13793571	13793930	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-1693	NM_001367834	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
239122	chrY	11301951	11302650	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	1119290	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
217637	chr8	30063901	30065000	+	0	NA	intron (NM_016127, intron 5 of 5)	intron (NM_016127, intron 5 of 5)	18614	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
45624	chr11	118918801	118920220	+	0	NA	intron (NM_001378214, intron 1 of 8)	intron (NM_001378214, intron 1 of 8)	6416	NR_165445	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
8360	chr1	40309671	40310650	+	0	NA	exon (NM_001852, exon 15 of 32)	exon (NM_001852, exon 15 of 32)	7126	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
176643	chr4	99921201	99921480	+	0	NA	intron (NM_001031723, intron 3 of 7)	MamRep605|LTR?|LTR?	25278	NM_001278311	79982		NM_024920	ENSG00000164031	DNAJB14	EGNR9427|PRO34683	DnaJ heat shock protein family (Hsp40) member B14	protein-coding
115090	chr19	14235371	14236050	+	0	NA	Intergenic	Intergenic	-29541	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
155010	chr22	37336601	37336800	+	0	NA	Intergenic	Intergenic	18139	NR_110515	100506271		NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA
205591	chr7	21460751	21461350	+	0	NA	intron (NM_003112, intron 3 of 5)	LTR12C|LTR|ERV1	-10008	NR_031594	100302122		NR_031594	ENSG00000221783	MIR1183	MIRN1183|hsa-mir-1183	microRNA 1183	ncRNA
84594	chr16	30657501	30660300	+	0	NA	5' UTR (NM_001105079, exon 1 of 18)	5' UTR (NM_001105079, exon 1 of 18)	469	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
25587	chr10	8042171	8042600	+	0	NA	Intergenic	Intergenic	10106	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
93849	chr17	20999701	21000230	+	0	NA	3' UTR (NM_015276, exon 13 of 13)	3' UTR (NM_015276, exon 13 of 13)	43046	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
141979	chr20	1363121	1363380	+	0	NA	intron (NR_040047, intron 1 of 2)	intron (NR_040047, intron 1 of 2)	29711	NR_106929	102465524		NR_106929	ENSG00000284436	MIR6869	hsa-mir-6869	microRNA 6869	ncRNA
130530	chr2	85636351	85636450	+	0	NA	intron (NR_046347, intron 7 of 12)	intron (NR_046347, intron 7 of 12)	20214	NM_001256725	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
195641	chr6	37861701	37861900	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	42073	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
196220	chr6	42785921	42786380	+	0	NA	intron (NR_134654, intron 1 of 1)	intron (NR_134654, intron 1 of 1)	2654	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
145011	chr20	37695271	37695430	+	0	NA	intron (NM_030877, intron 1 of 15)	AluJr4|SINE|Alu	1320	NM_030877	56259		NM_030877	ENSG00000132792	CTNNBL1	C20orf33|IMD99|NAP|P14L|PP8304|dJ633O20.1	catenin beta like 1	protein-coding
126127	chr2	26068501	26069300	+	0	NA	intron (NM_016131, intron 1 of 5)	intron (NM_016131, intron 1 of 5)	34816	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
231133	chr9	129844421	129844680	+	0	NA	intron (NM_001008563, intron 1 of 25)	AluJb|SINE|Alu	9092	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
234285	chrX	13654371	13654530	+	0	NA	intron (NM_152634, intron 1 of 3)	MER58A|DNA|hAT-Charlie	1309	NM_001297563	170082		NM_152634	ENSG00000176896	TCEANC	TCEANC1	transcription elongation factor A N-terminal and central domain containing	protein-coding
59329	chr13	24506471	24506630	+	0	NA	intron (NM_006437, intron 1 of 33)	LTR12C|LTR|ERV1	6228	NM_006437	143		NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	poly(ADP-ribose) polymerase family member 4	protein-coding
44562	chr11	108218851	108219480	+	0	NA	intron (NM_001321307, intron 1 of 17)	LTR33A_|LTR|ERVL	3473	NM_001321307	4863		NM_002519	ENSG00000149308	NPAT	E14|E14/NPAT|p220	nuclear protein, coactivator of histone transcription	protein-coding
2696	chr1	10635801	10636780	+	0	NA	TTS (NM_001079843)	TTS (NM_001079843)	160356	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
48957	chr12	12836851	12837600	+	0	NA	Intergenic	Intergenic	23879	NM_201224	51202		NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD-box helicase 47	protein-coding
108134	chr18	62425501	62426050	+	0	NA	Intergenic	Intergenic	-97250	NM_017742	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
219439	chr8	72152971	72153200	+	0	NA	Intergenic	L1PA2|LINE|L1	-77501	NM_007332	8989		NM_007332	ENSG00000104321	TRPA1	ANKTM1|FEPS|FEPS1|p120	transient receptor potential cation channel subfamily A member 1	protein-coding
153358	chr22	24426171	24428330	+	0	NA	promoter-TSS (NM_000675)	promoter-TSS (NM_000675)	-349	NR_103544	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
82884	chr16	21559771	21560130	+	0	NA	Intergenic	AluJb|SINE|Alu	-37271	NM_001288659	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
170519	chr3	186533951	186534630	+	0	NA	Intergenic	Intergenic	10090	NM_017541	1427		NM_017541	ENSG00000213139	CRYGS	CRYG8|CTRCT20	crystallin gamma S	protein-coding
19277	chr1	172726921	172727530	+	0	NA	Intergenic	L1PA15-16|LINE|L1	68122	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
228739	chr9	109903601	109903800	+	0	NA	intron (NM_147150, intron 3 of 9)	intron (NM_147150, intron 3 of 9)	123502	NM_053016	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
188820	chr5	159049971	159050480	+	0	NA	intron (NM_182708, intron 5 of 14)	(TC)n|Simple_repeat|Simple_repeat	47731	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
61410	chr13	51781301	51781650	+	0	NA	intron (NR_165330, intron 4 of 9)	L2a|LINE|L2	22260	NM_001377932	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
95787	chr17	38708201	38708400	+	0	NA	intron (NM_005937, intron 4 of 19)	L2a|LINE|L2	3027	NM_005937	4302		NM_005937	ENSG00000275023	MLLT6	AF17	MLLT6, PHD finger containing	protein-coding
209074	chr7	74790971	74791200	+	0	NA	Intergenic	AluJr|SINE|Alu	17123	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
171101	chr3	195503201	195503400	+	0	NA	Intergenic	L1MC1|LINE|L1	40025	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
163182	chr3	50196671	50196830	+	0	NA	3' UTR (NM_000172, exon 9 of 9)	3' UTR (NM_000172, exon 9 of 9)	5140	NM_000172	2779		NM_000172	ENSG00000114349	GNAT1	CSNB1G|CSNBAD3|GBT1|GNATR|HG1F	G protein subunit alpha transducin 1	protein-coding
65357	chr14	50489671	50490030	+	0	NA	intron (NM_198794, intron 3 of 31)	intron (NM_198794, intron 3 of 31)	42719	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
40573	chr11	64356351	64357100	+	0	NA	intron (NM_032251, intron 26 of 26)	L2a|LINE|L2	-2437	NM_001300802	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
138048	chr2	201422371	201423350	+	0	NA	intron (NM_015049, intron 1 of 15)	intron (NM_015049, intron 1 of 15)	28598	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
136724	chr2	181178671	181179680	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	55338	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
2400	chr1	9545701	9545900	+	0	NA	intron (NM_032315, intron 1 of 6)	AluSz|SINE|Alu	6335	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
196118	chr6	42383201	42383930	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	68486	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
41968	chr11	67356371	67357500	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-3339	NM_001256870	57804		NM_021173	ENSG00000175482	POLD4	POLDS|p12	DNA polymerase delta 4, accessory subunit	protein-coding
1269	chr1	2309771	2310230	+	0	NA	3' UTR (NM_003036, exon 7 of 7)	3' UTR (NM_003036, exon 7 of 7)	42661	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
113781	chr19	10547221	10547480	+	0	NA	intron (NR_104024, intron 5 of 9)	intron (NR_104024, intron 5 of 9)	3446	NM_001281504	84971		NM_032885	ENSG00000130734	ATG4D	APG4-D|APG4D|AUTL4|HsAPG4D	autophagy related 4D cysteine peptidase	protein-coding
134426	chr2	143125771	143125930	+	0	NA	Intergenic	Intergenic	-3569	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
179992	chr5	898551	898930	+	0	NA	intron (NM_001166260, intron 3 of 8)	intron (NM_001166260, intron 3 of 8)	5856	NM_004237	9319		NM_004237	ENSG00000071539	TRIP13	16E1BP|MVA3|OOMD9|OZEMA9	thyroid hormone receptor interactor 13	protein-coding
15173	chr1	149101871	149102030	+	0	NA	Intergenic	AluJb|SINE|Alu	-19639	NM_001037675	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
140277	chr2	232325521	232326300	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-52841	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
100055	chr17	58092671	58093650	+	0	NA	3' UTR (NM_080677, exon 3 of 3)	3' UTR (NM_080677, exon 3 of 3)	9741	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
197886	chr6	89242601	89242980	+	0	NA	Intergenic	Intergenic	-11502	NM_001267582	2569		NM_002042	ENSG00000146276	GABRR1	-	gamma-aminobutyric acid type A receptor subunit rho1	protein-coding
102353	chr17	75508401	75509100	+	0	NA	intron (NM_020753, intron 2 of 19)	MIRb|SINE|MIR	1140	NM_001142643	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
9628	chr1	52423851	52424950	+	0	NA	intron (NM_015269, intron 29 of 29)	intron (NM_015269, intron 29 of 29)	19798	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
165822	chr3	105828801	105829530	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	38426	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
233263	chr9	137281951	137282250	+	0	NA	3' UTR (NM_017723, exon 2 of 2)	3' UTR (NM_017723, exon 2 of 2)	4374	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
187249	chr5	141411601	141412000	+	0	NA	intron (NM_018926, intron 1 of 3)	AluJr|SINE|Alu	-1376	NM_018913	56106		NM_018913	ENSG00000253846	PCDHGA10	PCDH-GAMMA-A10	protocadherin gamma subfamily A, 10	protein-coding
60883	chr13	46126451	46128330	+	0	NA	3' UTR (NM_002298, exon 16 of 16)	3' UTR (NM_002298, exon 16 of 16)	-22314	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
37550	chr11	18703021	18703280	+	0	NA	3' UTR (NM_153347, exon 3 of 3)	3' UTR (NM_153347, exon 3 of 3)	4371	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
160360	chr3	27840771	27841200	+	0	NA	intron (NR_146630, intron 3 of 4)	intron (NR_146630, intron 3 of 4)	-6849	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
97355	chr17	43295701	43295900	+	0	NA	TTS (NR_002716).9	TTS (NR_002716).9	815	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
3252	chr1	13960451	13960630	+	0	NA	Intergenic	Intergenic	211125	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
123212	chr19	52745921	52746680	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-11246	NM_001161500	81856		NM_030972	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
148123	chr20	63454121	63454600	+	0	NA	intron (NM_001382235, intron 1 of 16)	CpG	18295	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
136623	chr2	179024951	179025050	+	0	NA	intron (NM_173648, intron 2 of 23)	MER5B|DNA|hAT-Charlie	25137	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
99228	chr17	49646271	49646500	+	0	NA	5' UTR (NM_001370731, exon 1 of 10)	5' UTR (NM_001370731, exon 1 of 10)	133	NM_001370730	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
116671	chr19	18393321	18393580	+	0	NA	intron (NM_145256, intron 1 of 1)	AluSx1|SINE|Alu	4172	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
175430	chr4	71050871	71051030	+	0	NA	Intergenic	Intergenic	57301	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
221637	chr8	125922901	125923600	+	0	NA	intron (NR_038447, intron 3 of 3)	intron (NR_038447, intron 3 of 3)	27947	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
59570	chr13	27427001	27427850	+	0	NA	intron (NM_002097, intron 2 of 8)	AluJb|SINE|Alu	2806	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
191236	chr6	5832651	5833000	+	0	NA	Intergenic	Intergenic	-137553	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
67785	chr14	73753101	73753800	+	0	NA	intron (NM_001043318, intron 1 of 11)	MIRb|SINE|MIR	-5297	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
123983	chr19	55438451	55438900	+	0	NA	intron (NM_001145176, intron 2 of 3)	intron (NM_001145176, intron 2 of 3)	4188	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
120698	chr19	45168821	45169350	+	0	NA	intron (NM_001270891, intron 1 of 5)	intron (NM_001270891, intron 1 of 5)	-8935	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
14365	chr1	144076711	144077930	+	0	NA	Intergenic	CpG	-103801	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
2090	chr1	7956821	7957280	+	0	NA	Intergenic	AluSz|SINE|Alu	-4604	NM_001123377	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
7532	chr1	34864521	34865050	+	0	NA	TTS (NM_001080418)	TTS (NM_001080418)	-5036	NM_001320261	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
44766	chr11	112254271	112254450	+	0	NA	intron (NM_001145024, intron 2 of 3)	(GT)n|Simple_repeat|Simple_repeat	-5905	NR_133566	100132686		NR_133566	ENSG00000268472	LOC100132686	-	uncharacterized LOC100132686	ncRNA
182994	chr5	72235701	72236350	+	0	NA	intron (NM_001286751, intron 5 of 10)	MER34B|LTR|ERV1	56238	NM_001324255	4131		NM_005909	ENSG00000131711	MAP1B	DFNA83|FUTSCH|MAP5|PPP1R102|PVNH9	microtubule associated protein 1B	protein-coding
94625	chr17	29905601	29905800	+	0	NA	intron (NM_001282129, intron 1 of 15)	MER52C|LTR|ERV1	-24203	NM_001145053	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
72608	chr15	37097101	37097300	+	0	NA	intron (NM_172315, intron 1 of 11)	intron (NM_172315, intron 1 of 11)	1496	NM_172315	4212		NM_002399	ENSG00000134138	MEIS2	CPCMR|HsT18361|MRG1	Meis homeobox 2	protein-coding
101328	chr17	66707401	66707600	+	0	NA	intron (NM_002737, intron 8 of 16)	intron (NM_002737, intron 8 of 16)	-79572	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
239279	chrY	13750871	13751900	+	0	NA	Intergenic	Intergenic	47486	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
109277	chr19	543371	544650	+	0	NA	promoter-TSS (NM_005317)	promoter-TSS (NM_005317)	-43	NM_005317	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
149055	chr21	15128901	15129100	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-64000	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
126974	chr2	36352951	36353050	+	0	NA	Intergenic	Intergenic	2570	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
180125	chr5	1315101	1316100	+	0	NA	Intergenic	Intergenic	-6223	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
195975	chr6	41964171	41965100	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-22787	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
152276	chr22	20293771	20294130	+	0	NA	Intergenic	L1MB5|LINE|L1	-25632	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
143808	chr20	32467871	32468830	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	15140	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
124300	chr19	57903401	57903680	+	0	NA	Intergenic	HERVK14-int|LTR|ERVK	13052	NM_001297734	147687		NM_152475	ENSG00000173480	ZNF417	-	zinc finger protein 417	protein-coding
60721	chr13	44197971	44198130	+	0	NA	Intergenic	Intergenic	-1850	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
14390	chr1	144217121	144217800	+	0	NA	Intergenic	Intergenic	30745	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
115523	chr19	15442671	15442830	+	0	NA	intron (NM_001371589, intron 2 of 12)	intron (NM_001371589, intron 2 of 12)	-6798	NR_031716	100302127		NR_031716	ENSG00000269782	MIR1470	MIRN1470|hsa-mir-1470	microRNA 1470	ncRNA
203364	chr6	170380171	170380330	+	0	NA	intron (NM_032448, intron 6 of 10)	L1MA9|LINE|L1	49489	NR_039787	100616430		NR_039787	ENSG00000266245	MIR4644	-	microRNA 4644	ncRNA
26655	chr10	22595501	22595700	+	0	NA	intron (NM_001330062, intron 3 of 9)	AluSz6|SINE|Alu	118508	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
153945	chr22	30344321	30344780	+	0	NA	intron (NM_005877, intron 4 of 15)	MIRb|SINE|MIR	-12074	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
168016	chr3	136880201	136880930	+	0	NA	intron (NM_001291999, intron 1 of 3)	intron (NM_001291999, intron 1 of 3)	18357	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
121563	chr19	47262771	47263350	+	0	NA	intron (NM_015603, intron 5 of 11)	AluJb|SINE|Alu	6535	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
132254	chr2	102522751	102523250	+	0	NA	intron (NM_001011552, intron 9 of 11)	AluJb|SINE|Alu	49774	NM_001011552	389015		NM_001011552	ENSG00000180251	SLC9A4	NHE4	solute carrier family 9 member A4	protein-coding
164956	chr3	71262871	71263250	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-17983	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
68668	chr14	90273921	90274500	+	0	NA	3' UTR (NM_002802, exon 11 of 11)	3' UTR (NM_002802, exon 11 of 11)	16271	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
41324	chr11	65898871	65899700	+	0	NA	intron (NM_001300855, intron 1 of 3)	CpG	1103	NM_005438	8061		NM_005438	ENSG00000175592	FOSL1	FRA|FRA1|fra-1	FOS like 1, AP-1 transcription factor subunit	protein-coding
55502	chr12	104956421	104956680	+	0	NA	intron (NM_001352169, intron 1 of 11)	AluSz|SINE|Alu	1740	NM_001352170	84102		NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
120666	chr19	45094901	45095100	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	1821	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
141997	chr20	1438301	1438500	+	0	NA	Intergenic	Intergenic	29292	NM_018839	55968		NM_016143	ENSG00000088833	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 cofactor	protein-coding
220160	chr8	95056701	95057230	+	0	NA	intron (NR_148915, intron 9 of 9)	intron (NR_148915, intron 9 of 9)	-15949	NR_036105	100422964		NR_036105	ENSG00000283522	MIR3150A	MIR3150|mir-3150a	microRNA 3150a	ncRNA
228601	chr9	105115301	105115800	+	0	NA	Intergenic	Intergenic	-129055	NM_001330731	23446		NM_022109	ENSG00000070214	SLC44A1	CD92|CDW92|CHTL1|CONATOC|CTL1	solute carrier family 44 member 1	protein-coding
202602	chr6	158715251	158715630	+	0	NA	intron (NM_001318745, intron 6 of 14)	intron (NM_001318745, intron 6 of 14)	49313	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
135571	chr2	165793611	165795180	+	0	NA	promoter-TSS (NM_004482)	promoter-TSS (NM_004482)	-148	NM_004482	2591		NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HFTC1|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
218654	chr8	57213271	57213630	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-4826	NR_038235	100507651		NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
24083	chr1	235326571	235327500	+	0	NA	promoter-TSS (NM_001371477)	promoter-TSS (NM_001371477)	-181	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
30002	chr10	73765271	73765830	+	0	NA	exon (NM_004922, exon 10 of 24)	exon (NM_004922, exon 10 of 24)	-6726	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
237159	chrX	107506671	107507050	+	0	NA	Intergenic	CpG	-15590	NM_032428	84443		NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
107157	chr18	35271701	35271900	+	0	NA	intron (NM_001166012, intron 1 of 4)	LTR12C|LTR|ERV1	18429	NM_001112734	100101467		NM_001112734	ENSG00000186814	ZSCAN30	ZNF-WYM|ZNF397OS|ZNF917	zinc finger and SCAN domain containing 30	protein-coding
126038	chr2	25371971	25372130	+	0	NA	Intergenic	Intergenic	-29460	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
161086	chr3	38133921	38134380	+	0	NA	intron (NR_024024, intron 2 of 9)	intron (NR_024024, intron 2 of 9)	2977	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
43189	chr11	75407701	75408780	+	0	NA	intron (NM_001256802, intron 6 of 6)	AluJb|SINE|Alu	3819	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
33117	chr10	111814151	111814350	+	0	NA	Intergenic	L1PA2|LINE|L1	369515	NM_020918	57678		NM_020918	ENSG00000119927	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
164606	chr3	66298671	66299280	+	0	NA	intron (NM_173471, intron 6 of 10)	intron (NM_173471, intron 6 of 10)	77972	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
110443	chr19	1983551	1983850	+	0	NA	Intergenic	AluY|SINE|Alu	-29151	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
183487	chr5	79269101	79269300	+	0	NA	intron (NM_152405, intron 1 of 10)	L1MC3|LINE|L1	33069	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
36973	chr11	11808801	11809280	+	0	NA	Intergenic	Intergenic	-25818	NR_107037	102465870		NR_107037	ENSG00000278529	MIR8070	hsa-mir-8070	microRNA 8070	ncRNA
106747	chr18	23570501	23572130	+	0	NA	intron (NM_000271, intron 3 of 24)	AluJb|SINE|Alu	15191	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
96203	chr17	39760201	39760430	+	0	NA	3' UTR (NM_001257414, exon 5 of 5)	3' UTR (NM_001257414, exon 5 of 5)	17910	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
24276	chr1	236465451	236466180	+	0	NA	intron (NM_080738, intron 4 of 5)	intron (NM_080738, intron 4 of 5)	-52399	NM_201545	3964		NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
236749	chrX	78333501	78334000	+	0	NA	Intergenic	Intergenic	-6059	NM_001282186	10800		NM_006639	ENSG00000173198	CYSLTR1	CYSLT1|CYSLT1R|CYSLTR|HMTMF81	cysteinyl leukotriene receptor 1	protein-coding
59621	chr13	27967421	27967680	+	0	NA	intron (NM_001354700, intron 1 of 2)	intron (NM_001354700, intron 1 of 2)	1765	NM_001265	1045		NM_001265	ENSG00000165556	CDX2	CDX-3|CDX2/AS|CDX3	caudal type homeobox 2	protein-coding
182129	chr5	56137971	56138130	+	0	NA	intron (NM_024669, intron 7 of 11)	L1MC1|LINE|L1	95280	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
25249	chr10	6056771	6057530	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	5217	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
21241	chr1	204296521	204296780	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	63279	NM_014935	22874		NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
224011	chr9	2655271	2656100	+	0	NA	3' UTR (NM_001018056, exon 18 of 18)	3' UTR (NM_001018056, exon 18 of 18)	-33312	NR_015375	401491		NR_015375	ENSG00000236404	VLDLR-AS1	linc-VLDLR|lincRNA-VLDLR	VLDLR antisense RNA 1	ncRNA
218904	chr8	60714071	60714430	+	0	NA	intron (NM_017780, intron 1 of 37)	CpG	-27009	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
202952	chr6	161079651	161080380	+	0	NA	intron (NM_006724, intron 5 of 25)	intron (NM_006724, intron 5 of 25)	81967	NR_024277	79992		NM_024929		AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1	ncRNA
116358	chr19	17870151	17870930	+	0	NA	Intergenic	AluJo|SINE|Alu	-1405	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
228951	chr9	113400871	113401900	+	0	NA	promoter-TSS (NM_000031)	promoter-TSS (NM_000031)	-47	NM_001003945	210		NM_000031	ENSG00000148218	ALAD	ALADH|PBGS	aminolevulinate dehydratase	protein-coding
6080	chr1	27232271	27232930	+	0	NA	Intergenic	AluSx|SINE|Alu	-2032	NM_001276252	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
97406	chr17	43391171	43391530	+	0	NA	Intergenic	AluSp|SINE|Alu	-2452	NR_027413	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
219876	chr8	85297471	85297730	+	0	NA	Intergenic	Intergenic	44114	NM_001164830	759		NM_001738	ENSG00000133742	CA1	CA-I|CAB|Car1|HEL-S-11	carbonic anhydrase 1	protein-coding
178137	chr4	142275551	142275650	+	0	NA	intron (NR_169617, intron 7 of 22)	intron (NR_169617, intron 7 of 22)	30232	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
18153	chr1	160768011	160769350	+	0	NA	Intergenic	AluSx|SINE|Alu	-27494	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
166403	chr3	113561801	113562380	+	0	NA	intron (NM_001322297, intron 1 of 24)	intron (NM_001322297, intron 1 of 24)	29535	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
197507	chr6	75746771	75747330	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2189	NM_001368866	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
218753	chr8	58898401	58899030	+	0	NA	intron (NM_014729, intron 3 of 8)	intron (NM_014729, intron 3 of 8)	220432	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
172515	chr4	2267671	2268330	+	0	NA	Intergenic	Intergenic	-5891	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
69042	chr14	91860801	91861780	+	0	NA	intron (NM_001128596, intron 1 of 11)	intron (NM_001128596, intron 1 of 11)	6246	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
57039	chr12	120753671	120753830	+	0	NA	Intergenic	L1MB7|LINE|L1	27924	NM_001302554	35		NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	acyl-CoA dehydrogenase short chain	protein-coding
223382	chr8	143904271	143904630	+	0	NA	Intergenic	L1M4|LINE|L1	-25983	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238582	chrX	153880071	153880230	+	0	NA	promoter-TSS (NR_130768)	promoter-TSS (NR_130768)	-522	NR_130768	100996465		NM_001039768	ENSG00000273769	L1CAM-AS1	LCA10|LCAP	L1CAM antisense RNA 1	ncRNA
78386	chr15	91862971	91863330	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	8846	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
3984	chr1	18906721	18907580	+	0	NA	3' UTR (NM_001136265, exon 9 of 9)	3' UTR (NM_001136265, exon 9 of 9)	-4351	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
208228	chr7	65375851	65377050	+	0	NA	intron (NM_001287534, intron 1 of 1)	AluSg|SINE|Alu	2595	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
20983	chr1	202630671	202631230	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	12503	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
209938	chr7	92591771	92591930	+	0	NA	Intergenic	Intergenic	-1460	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
75142	chr15	64599151	64599650	+	0	NA	intron (NM_015042, intron 2 of 9)	L2a|LINE|L2	103881	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
69554	chr14	96584021	96584630	+	0	NA	Intergenic	Intergenic	81460	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
34902	chr11	393051	393450	+	0	NA	promoter-TSS (NM_007183)	promoter-TSS (NM_007183)	654	NM_001303029	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
102059	chr17	74893321	74894380	+	0	NA	promoter-TSS (NM_178128)	promoter-TSS (NM_178128)	-217	NM_178128	283985		NM_178128	ENSG00000172782	FADS6	FP18279	fatty acid desaturase 6	protein-coding
232057	chr9	133469751	133469850	+	0	NA	3' UTR (NM_001242369, exon 6 of 6)	3' UTR (NM_001242369, exon 6 of 6)	9299	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
228865	chr9	112348371	112349250	+	0	NA	Intergenic	Intergenic	-15146	NM_001163790	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
34371	chr10	132255171	132255730	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	-6342	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
213115	chr7	131303101	131303430	+	0	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	24514	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
82419	chr16	16294801	16295000	+	0	NA	TTS (NM_001004067).4	TTS (NM_001004067).4	-5259	NR_036145	100423006		NR_036145	ENSG00000266454	MIR3179-3	-	microRNA 3179-3	ncRNA
31346	chr10	93124571	93125150	+	0	NA	Intergenic	L1ME4c|LINE|L1	50967	NM_000783	1592		NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	cytochrome P450 family 26 subfamily A member 1	protein-coding
27402	chr10	31343651	31344000	+	0	NA	intron (NM_001323675, intron 1 of 6)	intron (NM_001323675, intron 1 of 6)	22165	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
94272	chr17	28704021	28704780	+	0	NA	exon (NM_001366303, exon 4 of 5)	exon (NM_001366303, exon 4 of 5)	5704	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
231512	chr9	131409801	131410800	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	16214	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
190064	chr5	177601721	177602130	+	0	NA	intron (NM_007255, intron 1 of 5)	intron (NM_007255, intron 1 of 5)	1793	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
38015	chr11	35106271	35106980	+	0	NA	Intergenic	Intergenic	31407	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
68377	chr14	77966001	77966200	+	0	NA	Intergenic	CpG	165991	NM_001366489	57143		NM_020421	ENSG00000063761	ADCK1	MCP2	aarF domain containing kinase 1	protein-coding
187027	chr5	139789821	139790280	+	0	NA	Intergenic	L2a|LINE|L2	-5758	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
64518	chr14	24411851	24412380	+	0	NA	intron (NM_025081, intron 6 of 8)	intron (NM_025081, intron 6 of 8)	13112	NM_025081	57523		NM_025081	ENSG00000205978	NYNRIN	CGIN1|KIAA1305	NYN domain and retroviral integrase containing	protein-coding
53996	chr12	75388671	75389030	+	0	NA	intron (NR_149157, intron 1 of 11)	L1MC1|LINE|L1	2051	NR_149156	84698		NM_032606	ENSG00000180881	CAPS2	UG0636c06	calcyphosine 2	protein-coding
106592	chr18	22176471	22176630	+	0	NA	intron (NM_005257, intron 2 of 6)	intron (NM_005257, intron 2 of 6)	6961	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
120912	chr19	45617501	45617750	+	0	NA	intron (NR_147903, intron 15 of 19)	intron (NR_147903, intron 15 of 19)	-15413	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
68179	chr14	76138621	76139030	+	0	NA	Intergenic	CpG	-13060	NM_001322029	55668		NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G-patch domain containing 2 like	protein-coding
152249	chr22	20211871	20212330	+	0	NA	Intergenic	Intergenic	5768	NR_026919	150197		NM_152508	ENSG00000236499	LINC00896	-	long intergenic non-protein coding RNA 896	ncRNA
83644	chr16	28303001	28303430	+	0	NA	intron (NM_001024401, intron 1 of 3)	L2a|LINE|L2	10690	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
188571	chr5	157116371	157116950	+	0	NA	Intergenic	Intergenic	-7616	NM_032782	84868		NM_032782	ENSG00000135077	HAVCR2	CD366|HAVcr-2|KIM-3|SPTCL|TIM3|TIMD-3|TIMD3|Tim-3	hepatitis A virus cellular receptor 2	protein-coding
239246	chrY	13135971	13136130	+	0	NA	Intergenic	L1PA3|LINE|L1	230345	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
7509	chr1	33396521	33396780	+	0	NA	intron (NM_198040, intron 1 of 14)	intron (NM_198040, intron 1 of 14)	-3865	NM_001385120	1912		NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2	protein-coding
120283	chr19	43440471	43441000	+	0	NA	Intergenic	L2a|LINE|L2	24873	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
169388	chr3	160539551	160539850	+	0	NA	intron (NM_002268, intron 1 of 16)	intron (NM_002268, intron 1 of 16)	-24464	NR_003001	677767		NR_003001	ENSG00000238741	SCARNA7	U90	small Cajal body-specific RNA 7	ncRNA
234102	chrX	9383651	9383950	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-79495	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
49407	chr12	22618621	22618900	+	0	NA	intron (NR_135031, intron 1 of 1)	MER41A|LTR|ERV1	6286	NR_135031	105369691		NR_135030		ETNK1-DT	-	ETNK1 divergent transcript	ncRNA
119824	chr19	41356601	41356800	+	0	NA	intron (NM_030578, intron 3 of 3)	AluSx|SINE|Alu	-2778	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
177715	chr4	122154301	122154730	+	0	NA	intron (NM_001384125, intron 2 of 87)	intron (NM_001384125, intron 2 of 87)	2184	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
192707	chr6	26323751	26324430	+	0	NA	Intergenic	AluJb|SINE|Alu	-38556	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
94752	chr17	30811601	30811950	+	0	NA	intron (NM_015986, intron 1 of 7)	AluSx3|SINE|Alu	12917	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
60130	chr13	39095601	39096000	+	0	NA	Intergenic	MIRb|SINE|MIR	57344	NM_001012754	387921		NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
21958	chr1	208132121	208132400	+	0	NA	intron (NM_025179, intron 4 of 31)	intron (NM_025179, intron 4 of 31)	112124	NM_025179	5362		NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
92689	chr17	13594571	13595080	+	0	NA	intron (NM_006042, intron 1 of 1)	intron (NM_006042, intron 1 of 1)	7104	NM_006042	9955		NM_006042	ENSG00000153976	HS3ST3A1	3-OST-3A|3OST3A1	heparan sulfate-glucosamine 3-sulfotransferase 3A1	protein-coding
66793	chr14	64709671	64710280	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	5551	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
129599	chr2	70091421	70092180	+	0	NA	Intergenic	Intergenic	4323	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
89523	chr16	89178351	89178650	+	0	NA	intron (NM_004933, intron 1 of 13)	intron (NM_004933, intron 1 of 13)	6752	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
42348	chr11	68527351	68527930	+	0	NA	intron (NM_001352348, intron 3 of 24)	intron (NM_001352348, intron 3 of 24)	66888	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
14020	chr1	120728801	120729450	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	5186	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
16299	chr1	154173001	154173200	+	0	NA	exon (NM_001043353, exon 3 of 8)	exon (NM_001043353, exon 3 of 8)	5104	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
6919	chr1	31643401	31643600	+	0	NA	intron (NM_012392, intron 1 of 4)	intron (NM_012392, intron 1 of 4)	1117	NM_001359651	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
64382	chr14	24145671	24146900	+	0	NA	promoter-TSS (NM_001310332).2	promoter-TSS (NM_001310332).2	325	NM_002818	5721		NM_002818	ENSG00000100911	PSME2	PA28B|PA28beta|REGbeta	proteasome activator subunit 2	protein-coding
162898	chr3	49396651	49397000	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluSx1|SINE|Alu	15151	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
17762	chr1	159027571	159027730	+	0	NA	intron (NM_001376587, intron 6 of 11)	L1PBa|LINE|L1	17743	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
98287	chr17	46222951	46223300	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	2242	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
187276	chr5	141550321	141550780	+	0	NA	intron (NM_005219, intron 17 of 27)	LTR52|LTR|ERVL	-7761	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
114128	chr19	11198821	11199480	+	0	NA	TTS (NM_001367830)	TTS (NM_001367830)	-1285	NM_001379553	25959		NM_015493	ENSG00000197256	KANK2	ANKRD25|MXRA3|NPHS16|PPKWH|SIP	KN motif and ankyrin repeat domains 2	protein-coding
103133	chr17	77391501	77393530	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	4539	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
26214	chr10	14571721	14572800	+	0	NA	promoter-TSS (NM_001320737)	promoter-TSS (NM_001320737)	-71	NM_001320737	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
165795	chr3	105804971	105805130	+	0	NA	intron (NM_001321811, intron 3 of 16)	L2|LINE|L2	62541	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
9206	chr1	45620001	45620200	+	0	NA	TTS (NM_001190182)	TTS (NM_001190182)	3954	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
117914	chr19	32971351	32973130	+	0	NA	promoter-TSS (NM_152266)	promoter-TSS (NM_152266)	-2	NM_152266	91442		NM_152266	ENSG00000131944	FAAP24	C19orf40	FA core complex associated protein 24	protein-coding
160113	chr3	19946651	19948300	+	0	NA	promoter-TSS (NM_001330688)	promoter-TSS (NM_001330688)	378	NM_004162	5868		NM_004162	ENSG00000144566	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
15008	chr1	148157171	148157330	+	0	NA	Intergenic	Intergenic	-4969	NM_001385471	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
157994	chr22	49856471	49856630	+	0	NA	intron (NM_014838, intron 1 of 1)	CpG	2706	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
220019	chr8	90642621	90642900	+	0	NA	intron (NM_001008495, intron 1 of 2)	intron (NM_001008495, intron 1 of 2)	3145	NM_001146273	169200		NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
179485	chr4	184547371	184547730	+	0	NA	Intergenic	Intergenic	-9967	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
33319	chr10	114937871	114939050	+	0	NA	exon (NM_139169, exon 1 of 8)	exon (NM_139169, exon 1 of 8)	265	NM_139169	142940		NM_139169	ENSG00000165832	TRUB1	PUS4	TruB pseudouridine synthase family member 1	protein-coding
43387	chr11	77069571	77070430	+	0	NA	intron (NM_004055, intron 1 of 12)	intron (NM_004055, intron 1 of 12)	3029	NM_004055	726		NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
88934	chr16	87832451	87832550	+	0	NA	3' UTR (NM_003486, exon 10 of 10)	3' UTR (NM_003486, exon 10 of 10)	2160	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
143977	chr20	32853771	32853930	+	0	NA	Intergenic	AluSq|SINE|Alu	-5073	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
42702	chr11	72668571	72669350	+	0	NA	intron (NM_001146209, intron 1 of 31)	intron (NM_001146209, intron 1 of 31)	104	NM_001146209	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
146919	chr20	51610271	51610830	+	0	NA	intron (NM_006045, intron 23 of 27)	MIR|SINE|MIR	-47711	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
24756	chr1	248824301	248824500	+	0	NA	intron (NM_001322462, intron 1 of 8)	intron (NM_001322462, intron 1 of 8)	966	NM_001322463	80851		NM_030645	ENSG00000175137	SH3BP5L	-	SH3 binding domain protein 5 like	protein-coding
29343	chr10	69428551	69429080	+	0	NA	Intergenic	Intergenic	-11897	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
127611	chr2	43024501	43024880	+	0	NA	Intergenic	Intergenic	14853	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
230963	chr9	129453921	129456050	+	0	NA	Intergenic	Intergenic	-33675	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
179618	chr4	186058801	186059000	+	0	NA	Intergenic	MER74C|LTR|ERVL	-10256	NM_003265	7098		NM_003265	ENSG00000164342	TLR3	CD283|IIAE2|IMD83	toll like receptor 3	protein-coding
10920	chr1	84077611	84079150	+	0	NA	intron (NM_207578, intron 1 of 8)	CpG	301	NM_001375576	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
28749	chr10	61991101	61991300	+	0	NA	intron (NM_032199, intron 3 of 9)	L1MB4|LINE|L1	-58157	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
157129	chr22	42780001	42780480	+	0	NA	Intergenic	Intergenic	-58939	NM_001318038	53947		NM_017436	ENSG00000128274	A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	alpha 1,4-galactosyltransferase (P1PK blood group)	protein-coding
220313	chr8	98739051	98739150	+	0	NA	intron (NM_001256312, intron 6 of 12)	L1PA3|LINE|L1	86571	NM_001256313	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
96726	chr17	41662501	41663130	+	0	NA	Intergenic	Intergenic	-22616	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
174497	chr4	39951621	39952180	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluSc8|SINE|Alu	26011	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
74331	chr15	58484651	58485780	+	0	NA	intron (NR_120338, intron 2 of 2)	L2b|LINE|L2	13520	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
190408	chr5	179814021	179814800	+	0	NA	intron (NM_001142298, intron 2 of 8).2	intron (NM_001142298, intron 2 of 8).2	-6495	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
189156	chr5	171388401	171389450	+	0	NA	intron (NM_001355010, intron 1 of 6)	MIRb|SINE|MIR	1076	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
46665	chr11	128715101	128715500	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-19277	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
217930	chr8	38081771	38082150	+	0	NA	Intergenic	HERV1_LTRa|LTR|ERV1	-23533	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
135820	chr2	170370851	170371550	+	0	NA	intron (NR_045682, intron 9 of 35)	AluSx3|SINE|Alu	-20257	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
140026	chr2	231055251	231055650	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1414	NM_001191037	5707		NM_002807	ENSG00000173692	PSMD1	P112|Rpn2|S1	proteasome 26S subunit, non-ATPase 1	protein-coding
222015	chr8	130066021	130066380	+	0	NA	intron (NM_001362924, intron 28 of 30)	intron (NM_001362924, intron 28 of 30)	18568	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
12234	chr1	100420771	100421130	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	68444	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
224884	chr9	32359621	32359880	+	0	NA	Intergenic	Intergenic	-24853	NM_001278352	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
185048	chr5	115841221	115842750	+	0	NA	promoter-TSS (NM_001318091)	promoter-TSS (NM_001318091)	39	NM_001364119	1176		NM_001284	ENSG00000177879	AP3S1	CLAPS3|Sigma3A	adaptor related protein complex 3 subunit sigma 1	protein-coding
161534	chr3	42613221	42613880	+	0	NA	intron (NR_125400, intron 2 of 2)	intron (NR_125400, intron 2 of 2)	-12472	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
12452	chr1	107789871	107790100	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-101486	NM_001079874	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
226926	chr9	79591221	79591880	+	0	NA	intron (NM_001351556, intron 4 of 18)	L2b|LINE|L2	18373	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
2344	chr1	9236771	9236930	+	0	NA	intron (NM_004285, intron 1 of 4)	MIRb|SINE|MIR	2076	NM_004285	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
202420	chr6	157897001	157897400	+	0	NA	intron (NM_016224, intron 5 of 17)	MER21C|LTR|ERVL	73954	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
46690	chr11	128756301	128756530	+	0	NA	intron (NM_001167681, intron 2 of 9)	MLT1B|LTR|ERVL-MaLR	-60392	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
178269	chr4	143883021	143883280	+	0	NA	intron (NM_002102, intron 1 of 3)	MSTA|LTR|ERVL-MaLR	22409	NM_002102	2996		NM_002102	ENSG00000197465	GYPE	GPE|GYPA|MNS|MiIX	glycophorin E (MNS blood group)	protein-coding
133180	chr2	112915871	112917150	+	0	NA	intron (NM_173205, intron 1 of 3)	intron (NM_173205, intron 1 of 3)	1317	NM_173205	27178		NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-23|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
82843	chr16	21509251	21509530	+	0	NA	Intergenic	Intergenic	-3255	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
219849	chr8	82091171	82091330	+	0	NA	Intergenic	LTR12|LTR|ERV1	-248964	NM_022133	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
233686	chrX	1174721	1175250	+	0	NA	Intergenic	Intergenic	37664	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
103716	chr17	78834071	78834550	+	0	NA	intron (NR_169585, intron 4 of 19)	L1M5|LINE|L1	6504	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
148770	chr21	8200771	8200930	+	0	NA	non-coding (NR_038958, exon 2 of 7)	non-coding (NR_038958, exon 2 of 7)	3230	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
41094	chr11	65529801	65530900	+	0	NA	intron (NM_020680, intron 6 of 17)	intron (NM_020680, intron 6 of 17)	5267	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
26722	chr10	22674121	22674630	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	39733	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
156302	chr22	40527801	40528000	+	0	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	5927	NM_001318139	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
204862	chr7	5830601	5831000	+	0	NA	intron (NR_023382, intron 1 of 6)	AluSx|SINE|Alu	7640	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
150245	chr21	41418471	41419080	+	0	NA	Intergenic	FRAM|SINE|Alu	-1783	NM_001144925	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
152027	chr22	19445071	19445230	+	0	NA	intron (NM_173793, intron 2 of 2)	intron (NM_173793, intron 2 of 2)	2561	NM_001166242	128977		NM_173793	ENSG00000242259	C22orf39	Pants	chromosome 22 open reading frame 39	protein-coding
236776	chrX	79083001	79083480	+	0	NA	Intergenic	Intergenic	-61448	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
61858	chr13	77001671	77002030	+	0	NA	3' UTR (NM_001366624, exon 5 of 5)	3' UTR (NM_001366624, exon 5 of 5)	9769	NM_006493	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
79059	chr16	138051	139430	+	0	NA	promoter-TSS (NM_001077350)	promoter-TSS (NM_001077350)	-42	NM_001243249	8131		NM_012075	ENSG00000103148	NPRL3	C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11	NPR3 like, GATOR1 complex subunit	protein-coding
229188	chr9	114615421	114615880	+	0	NA	intron (NM_001330760, intron 1 of 8)	intron (NM_001330760, intron 1 of 8)	4359	NM_153045	203197		NM_153045	ENSG00000157693	TMEM268	C9orf91	transmembrane protein 268	protein-coding
86508	chr16	67081871	67082320	+	0	NA	intron (NM_022845, intron 4 of 5)	AluSz|SINE|Alu	-27846	NM_001320542	80262		NM_025187	ENSG00000125149	PHAF1	C16orf6|C16orf70|LIN10|MYTHO|lin-10	phagosome assembly factor 1	protein-coding
76933	chr15	78065001	78066950	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	11677	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
109026	chr18	79726571	79727130	+	0	NA	intron (NM_048368, intron 10 of 11)	intron (NM_048368, intron 10 of 11)	45420	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
160736	chr3	32462021	32463100	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	40292	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
19757	chr1	181485671	181486030	+	0	NA	intron (NM_001205294, intron 1 of 45)	CpG	2333	NM_000721	777		NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|DEE69|EIEE69|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
225291	chr9	34518371	34518530	+	0	NA	intron (NM_012144, intron 19 of 19)	intron (NM_012144, intron 19 of 19)	4540	NM_198573	375704		NM_198573	ENSG00000168913	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
32966	chr10	110493871	110494300	+	0	NA	Intergenic	L2b|LINE|L2	-3822	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
61151	chr13	48772671	48773030	+	0	NA	Intergenic	MIRc|SINE|MIR	118921	NM_001308476	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
65159	chr14	49461601	49462050	+	0	NA	Intergenic	Intergenic	124555	NM_001032	6235		NM_001032	ENSG00000213741	RPS29	DBA13|S29|uS14	ribosomal protein S29	protein-coding
51422	chr12	52017951	52018050	+	0	NA	Intergenic	AluY|SINE|Alu	-4832	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
81062	chr16	4327671	4328830	+	0	NA	promoter-TSS (NR_110901)	promoter-TSS (NR_110901)	90	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
174511	chr4	39977201	39978330	+	0	NA	5' UTR (NM_001100400, exon 1 of 16)	5' UTR (NM_001100400, exon 1 of 16)	146	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
6637	chr1	28928101	28929250	+	0	NA	intron (NM_001376013, intron 1 of 20)	intron (NM_001376013, intron 1 of 20)	14099	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
162866	chr3	49361421	49364150	+	0	NA	intron (NM_001313947, intron 2 of 3)	intron (NM_001313947, intron 2 of 3)	-4185	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
130362	chr2	85057071	85057580	+	0	NA	3' UTR (NM_020122, exon 7 of 7)	3' UTR (NM_020122, exon 7 of 7)	10022	NR_146453	100996478		NR_146453	ENSG00000260840	LINC01964	-	long intergenic non-protein coding RNA 1964	ncRNA
234474	chrX	17859571	17860030	+	0	NA	intron (NM_001172743, intron 1 of 2)	intron (NM_001172743, intron 1 of 2)	1027	NR_033348	10742		NM_021785	ENSG00000131831	RAI2	-	retinoic acid induced 2	protein-coding
174836	chr4	48364821	48365080	+	0	NA	intron (NM_020846, intron 1 of 7)	L1MEc|LINE|L1	23421	NM_020846	57606		NM_020846	ENSG00000109171	SLAIN2	KIAA1458	SLAIN motif family member 2	protein-coding
52931	chr12	57307621	57308050	+	0	NA	intron (NM_001351211, intron 3 of 24)	intron (NM_001351211, intron 3 of 24)	33939	NM_001351215	22864		NM_014925	ENSG00000179912	R3HDM2	CAG6|PR01365	R3H domain containing 2	protein-coding
158771	chr3	9410051	9410730	+	0	NA	intron (NM_001349451, intron 1 of 25)	L1MC5|LINE|L1	12775	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
3766	chr1	16680421	16681080	+	0	NA	promoter-TSS (NR_037446).2	promoter-TSS (NR_037446).2	-505	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
172501	chr4	2256071	2256230	+	0	NA	intron (NM_006454, intron 3 of 5)	intron (NM_006454, intron 3 of 5)	5959	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
109844	chr19	1209071	1209230	+	0	NA	intron (NM_000455, intron 1 of 9)	intron (NM_000455, intron 1 of 9)	3372	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
82913	chr16	21684201	21684450	+	0	NA	promoter-TSS (NM_001161683).2	promoter-TSS (NM_001161683).2	-104	NM_001161683	146183		NM_144672	ENSG00000155719	OTOA	CT108|DFNB22	otoancorin	protein-coding
47834	chr12	6601001	6601330	+	0	NA	intron (NM_001273, intron 6 of 39)	intron (NM_001273, intron 6 of 39)	5286	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
73737	chr15	45202521	45202780	+	0	NA	Intergenic	Intergenic	-1534	NM_138356	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
158627	chr3	4927701	4928680	+	0	NA	intron (NR_125916, intron 1 of 2)	intron (NR_125916, intron 1 of 2)	-21689	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
127367	chr2	39244871	39245580	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1242	NR_144521	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
66244	chr14	61347701	61349000	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	26907	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
13039	chr1	111227721	111228280	+	0	NA	intron (NM_001025197, intron 1 of 9)	intron (NM_001025197, intron 1 of 9)	287	NM_004000	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
167809	chr3	133579751	133580050	+	0	NA	intron (NM_001282764, intron 2 of 4)	intron (NM_001282764, intron 2 of 4)	5466	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
134850	chr2	148661101	148661330	+	0	NA	intron (NM_015630, intron 1 of 13)	L1M5|LINE|L1	16464	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
148558	chr20	64255221	64256900	+	0	NA	intron (NM_018257, intron 1 of 5)	CpG	312	NM_018257	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
23897	chr1	234969321	234969580	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-5451	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
84328	chr16	30179051	30179650	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-4060	NM_001193333	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
238878	chrX	154541721	154543900	+	0	NA	intron (NM_001099856, intron 1 of 9)	intron (NM_001099856, intron 1 of 9)	598	NM_001321396	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
120816	chr19	45483101	45483790	+	0	NA	Intergenic	AluSx1|SINE|Alu	9808	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
204998	chr7	6446121	6446380	+	0	NA	intron (NM_139179, intron 1 of 14)	AluSx3|SINE|Alu	1704	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
200350	chr6	134017971	134018130	+	0	NA	intron (NM_145176, intron 2 of 4)	intron (NM_145176, intron 2 of 4)	34574	NM_145176	154091		NM_145176	ENSG00000146411	SLC2A12	GLUT12|GLUT8	solute carrier family 2 member 12	protein-coding
97880	chr17	45059101	45059300	+	0	NA	intron (NM_001288654, intron 1 of 4)	AluYf1|SINE|Alu	1929	NM_001288654	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
20489	chr1	198643151	198643330	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	4200	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
69313	chr14	93180771	93181130	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	3947	NM_022151	64112		NM_022151	ENSG00000165943	MOAP1	MAP-1|PNMA4	modulator of apoptosis 1	protein-coding
188456	chr5	154483951	154484250	+	0	NA	Intergenic	Intergenic	-5873	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
213101	chr7	131183701	131184330	+	0	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	73921	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
92876	chr17	16426621	16426880	+	0	NA	exon (NM_016113, exon 7 of 15)	exon (NM_016113, exon 7 of 15)	11179	NM_016113	51393		NM_016113	ENSG00000187688	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel subfamily V member 2	protein-coding
120531	chr19	44900971	44901530	+	0	NA	exon (NM_006114, exon 9 of 10)	exon (NM_006114, exon 9 of 10)	-4546	NM_001302688	348		NM_000041	ENSG00000130203	APOE	AD2|APO-E|ApoE4|LDLCQ5|LPG	apolipoprotein E	protein-coding
223154	chr8	143528501	143528880	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	12757	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
12555	chr1	108688971	108689330	+	0	NA	Intergenic	L1ME1|LINE|L1	-3160	NM_001349768	55119		NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
87658	chr16	74585951	74586930	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	20674	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
140844	chr2	237072271	237072630	+	0	NA	Intergenic	Intergenic	-12991	NM_198189	10920		NM_006710	ENSG00000198612	COPS8	COP9|CSN8|SGN8	COP9 signalosome subunit 8	protein-coding
214477	chr7	150372771	150372930	+	0	NA	exon (NM_001099696, exon 2 of 2)	exon (NM_001099696, exon 2 of 2)	4028	NM_001362745	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
46164	chr11	123072651	123073350	+	0	NA	3' UTR (NM_024769, exon 7 of 7)	3' UTR (NM_024769, exon 7 of 7)	-10864	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
193050	chr6	28606551	28607150	+	0	NA	intron (NM_001329616, intron 1 of 5)	intron (NM_001329616, intron 1 of 5)	9327	NM_001329616	114821		NM_052923	ENSG00000232040	SCAND3	Buster4|FAM200D|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
151729	chr22	17769271	17769430	+	0	NA	intron (NM_001244567, intron 1 of 5)	intron (NM_001244567, intron 1 of 5)	4692	NM_197966	637		NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
36479	chr11	6250101	6250300	+	0	NA	Intergenic	Intergenic	-9638	NM_001318029	887		NM_176875	ENSG00000110148	CCKBR	CCK-2R|CCK-B|CCK2R|GASR	cholecystokinin B receptor	protein-coding
104148	chr17	80387401	80388180	+	0	NA	intron (NM_001256071, intron 63 of 67)	intron (NM_001256071, intron 63 of 67)	-27377	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
228615	chr9	105447571	105448450	+	0	NA	promoter-TSS (NM_001287191)	promoter-TSS (NM_001287191)	-24	NM_001287192	83856		NM_031919	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1 like	protein-coding
191303	chr6	6684251	6684750	+	0	NA	Intergenic	Tigger6a|DNA|TcMar-Tigger	-61674	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
24548	chr1	244858071	244858530	+	0	NA	intron (NM_031844, intron 6 of 13)	intron (NM_031844, intron 6 of 13)	-4083	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
221418	chr8	123693721	123694350	+	0	NA	intron (NM_001003954, intron 7 of 11)	intron (NM_001003954, intron 7 of 11)	-40234	NM_001081675	340359		NM_001081675	ENSG00000175946	KLHL38	C8ORFK36	kelch like family member 38	protein-coding
86192	chr16	57986321	57986580	+	0	NA	intron (NM_199456, intron 7 of 7)	L2c|LINE|L2	9906	NM_199046	374739		NM_199046	ENSG00000159648	SPMIP8	TEPP	sperm microtubule inner protein 8	protein-coding
197495	chr6	75612671	75612980	+	0	NA	intron (NM_015571, intron 1 of 23)	MER58B|DNA|hAT-Charlie	10945	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
78361	chr15	91336751	91337080	+	0	NA	Intergenic	Intergenic	-126424	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
139545	chr2	224849301	224849700	+	0	NA	intron (NM_001363762, intron 19 of 55)	intron (NM_001363762, intron 19 of 55)	97549	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
221685	chr8	126501901	126502300	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	56378	NM_174911	157638		NM_174911	ENSG00000168672	LRATD2	BCMP101|FAM84B|NSE2	LRAT domain containing 2	protein-coding
51525	chr12	52277901	52278100	+	0	NA	intron (NM_001320198, intron 2 of 10)	intron (NM_001320198, intron 2 of 10)	3355	NM_001320198	3892		NM_002284	ENSG00000170442	KRT86	HB6|Hb1|K86|KRTHB1|KRTHB6|MNX	keratin 86	protein-coding
228488	chr9	100066721	100066980	+	0	NA	intron (NM_015051, intron 1 of 11)	intron (NM_015051, intron 1 of 11)	32150	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
225403	chr9	35049721	35050280	+	0	NA	Intergenic	AluJr|SINE|Alu	7760	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
47017	chr12	359751	360050	+	0	NA	intron (NM_001042603, intron 5 of 27)	intron (NM_001042603, intron 5 of 27)	29420	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
37089	chr11	13207571	13208700	+	0	NA	Intergenic	L2c|LINE|L2	-68517	NM_001351804	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
195318	chr6	36603001	36603250	+	0	NA	non-coding (NR_036610, exon 7 of 7)	non-coding (NR_036610, exon 7 of 7)	8763	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
22872	chr1	225777001	225778510	+	0	NA	promoter-TSS (NM_003133)	promoter-TSS (NM_003133)	-58	NM_001130440	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
224005	chr9	2179751	2179850	+	0	NA	intron (NM_003070, intron 29 of 33)	intron (NM_003070, intron 29 of 33)	21344	NM_001289400	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
85300	chr16	49408051	49408230	+	0	NA	Intergenic	Intergenic	34336	NM_144602	123970		NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
199941	chr6	127909371	127910050	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-8629	NM_001164685	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
191009	chr6	3075301	3076280	+	0	NA	intron (NM_001317061, intron 2 of 12)	L1MEd|LINE|L1	7296	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
122163	chr19	48892921	48893350	+	0	NA	intron (NM_003323, intron 6 of 12)	AluSx3|SINE|Alu	5609	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
183435	chr5	78783471	78783630	+	0	NA	intron (NM_000046, intron 6 of 7)	intron (NM_000046, intron 6 of 7)	-134778	NM_005779	10184		NM_005779	ENSG00000145685	LHFPL2	-	LHFPL tetraspan subfamily member 2	protein-coding
62301	chr13	98998771	98999430	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	16685	NM_001366677	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
226822	chr9	77489451	77489950	+	0	NA	intron (NR_121184, intron 2 of 4)	LTR12C|LTR|ERV1	42051	NR_121184	101927422		NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
194689	chr6	33687301	33687500	+	0	NA	intron (NM_002224, intron 45 of 57)	intron (NM_002224, intron 45 of 57)	-10728	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
170880	chr3	192917601	192918500	+	0	NA	promoter-TSS (NM_178496)	promoter-TSS (NM_178496)	-194	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
44823	chr11	113994351	113994830	+	0	NA	Intergenic	Intergenic	17090	NM_001161772	3359		NM_000869	ENSG00000166736	HTR3A	5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3	5-hydroxytryptamine receptor 3A	protein-coding
2659	chr1	10470821	10471330	+	0	NA	intron (NM_004401, intron 1 of 5)	AluY|SINE|Alu	1454	NM_004401	1676		NM_004401	ENSG00000160049	DFFA	DFF-45|DFF1|ICAD	DNA fragmentation factor subunit alpha	protein-coding
44992	chr11	116953401	116954330	+	0	NA	intron (NM_001281748, intron 3 of 24)	intron (NM_001281748, intron 3 of 24)	-115915	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
62972	chr13	112293001	112293550	+	0	NA	Intergenic	Intergenic	-20192	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
88047	chr16	81448471	81448930	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	3530	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
209829	chr7	88759451	88759900	+	0	NA	promoter-TSS (NM_181646)	promoter-TSS (NM_181646)	-25	NM_181646	219578		NM_181646	ENSG00000182348	ZNF804B	-	zinc finger protein 804B	protein-coding
139827	chr2	230417721	230418230	+	0	NA	intron (NM_001080391, intron 2 of 28)	intron (NM_001080391, intron 2 of 28)	1219	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
33257	chr10	114501701	114502280	+	0	NA	intron (NM_001322883, intron 6 of 20)	L1MC1|LINE|L1	24923	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
89372	chr16	88788701	88789000	+	0	NA	Intergenic	AluSg|SINE|Alu	-3630	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
194560	chr6	33391151	33392880	+	0	NA	intron (NM_002263, intron 1 of 10).3	CpG	192	NM_002263	3833		NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
84964	chr16	31413821	31414080	+	0	NA	intron (NM_001318185, intron 16 of 29)	L2b|LINE|L2	14410	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
164780	chr3	69199321	69200600	+	0	NA	intron (NM_015123, intron 11 of 22)	intron (NM_015123, intron 11 of 22)	-77365	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
212440	chr7	128398701	128399330	+	0	NA	intron (NM_183243, intron 7 of 14)	intron (NM_183243, intron 7 of 14)	6980	NM_001142575	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
45236	chr11	117972621	117973280	+	0	NA	Intergenic	Intergenic	-13444	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
181529	chr5	43062601	43063050	+	0	NA	intron (NR_104651, intron 2 of 2)	AluY|SINE|Alu	4146	NR_034127	100132356		NM_175919		LOC100132356	-	uncharacterized LOC100132356	ncRNA
89901	chr16	89693801	89694950	+	0	NA	intron (NM_052987, intron 9 of 12)	intron (NM_052987, intron 9 of 12)	7330	NM_152339	124044		NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
107012	chr18	32074201	32074730	+	0	NA	Intergenic	Intergenic	-17409	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
171115	chr3	195526301	195526780	+	0	NA	intron (NM_006241, intron 2 of 5)	intron (NM_006241, intron 2 of 5)	16785	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
83145	chr16	23254151	23254880	+	0	NA	Intergenic	Intergenic	-47787	NM_000336	6338		NM_000336	ENSG00000168447	SCNN1B	BESC1|ENaCb|ENaCbeta|LIDLS1|PHA1B2|SCNEB|beta-ENaC|beta-NaCH	sodium channel epithelial 1 subunit beta	protein-coding
119046	chr19	39053171	39053750	+	0	NA	Intergenic	Intergenic	-20911	NM_178820	126433		NM_178820	ENSG00000161243	FBXO27	FBG5|Fbx27	F-box protein 27	protein-coding
18213	chr1	160992221	160992480	+	0	NA	Intergenic	AluSx1|SINE|Alu	28802	NM_001348091	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
162962	chr3	49679671	49679830	+	0	NA	intron (NM_001640, intron 13 of 21)	intron (NM_001640, intron 13 of 21)	5399	NM_001640	327		NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
44781	chr11	112526721	112526980	+	0	NA	intron (NR_120559, intron 2 of 2)	intron (NR_120559, intron 2 of 2)	28952	NR_104155	387810		NR_104155	ENSG00000255484	LINC02764	-	long intergenic non-protein coding RNA 2764	ncRNA
40092	chr11	62793951	62794630	+	0	NA	exon (NM_006362, exon 19 of 21)	exon (NM_006362, exon 19 of 21)	-1519	NR_106769	102465257		NR_106769	ENSG00000274066	MIR6514	hsa-mir-6514|mir-6514	microRNA 6514	ncRNA
174932	chr4	49124621	49124880	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	138108	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
68719	chr14	90760251	90760350	+	0	NA	intron (NM_001010854, intron 3 of 19)	intron (NM_001010854, intron 3 of 19)	56117	NM_001320421	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
115158	chr19	14414751	14415500	+	0	NA	intron (NR_046366, intron 1 of 9)	L1MB7|LINE|L1	4216	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
204966	chr7	6376971	6377230	+	0	NA	intron (NM_018890, intron 1 of 6)	intron (NM_018890, intron 1 of 6)	2573	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
178185	chr4	142393151	142393250	+	0	NA	intron (NR_169599, intron 3 of 22)	MER57-int|LTR|ERV1	9933	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
207919	chr7	50662451	50663200	+	0	NA	intron (NM_001371008, intron 4 of 15)	intron (NM_001371008, intron 4 of 15)	42476	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
137917	chr2	200959651	200960030	+	0	NA	intron (NM_006190, intron 1 of 17)	AluJr|SINE|Alu	3820	NR_033915	4999		NM_006190	ENSG00000115942	ORC2	ORC2L	origin recognition complex subunit 2	protein-coding
10656	chr1	70409351	70409650	+	0	NA	Intergenic	AluSx|SINE|Alu	-1718	NM_001190463	1491		NM_001902	ENSG00000116761	CTH	CGL|CSE	cystathionine gamma-lyase	protein-coding
163354	chr3	50438521	50438780	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	64984	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
194717	chr6	33771401	33772500	+	0	NA	3' UTR (NM_001143944, exon 8 of 8)	3' UTR (NM_001143944, exon 8 of 8)	14992	NM_001143944	221496		NM_181336	ENSG00000161904	LEMD2	CTRCT42|LEM2|MARUPS|NET25|dJ482C21.1	LEM domain nuclear envelope protein 2	protein-coding
50424	chr12	47409651	47409750	+	0	NA	Intergenic	L2a|LINE|L2	-5308	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
6341	chr1	27723051	27723550	+	0	NA	Intergenic	AluSz|SINE|Alu	-2661	NM_001143914	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
80064	chr16	1980251	1980830	+	0	NA	exon (NM_001267721, exon 4 of 8)	exon (NM_001267721, exon 4 of 8)	929	NM_172168	124056		NM_144603	ENSG00000196408	NOXO1	P41NOX|P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28	NADPH oxidase organizer 1	protein-coding
232112	chr9	133726321	133726650	+	0	NA	intron (NM_001134707, intron 6 of 20)	intron (NM_001134707, intron 6 of 20)	11867	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
63997	chr14	22489301	22489600	+	0	NA	Intergenic	Intergenic	-6491	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
108909	chr18	79432101	79432300	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	31901	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
238907	chrX	154693271	154693650	+	0	NA	intron (NM_080612, intron 8 of 9)	L1MD2|LINE|L1	-39881	NM_020994	30848		NM_020994	ENSG00000126890	CTAG2	CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B	cancer/testis antigen 2	protein-coding
197213	chr6	63644871	63645230	+	0	NA	intron (NM_001290260, intron 1 of 3)	AluJb|SINE|Alu	-1476	NM_015153	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
58376	chr12	131807871	131808030	+	0	NA	Intergenic	AluSz|SINE|Alu	-20443	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
222280	chr8	133353801	133354000	+	0	NA	Intergenic	Intergenic	-56648	NM_001258433	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
134782	chr2	147630701	147630980	+	0	NA	Intergenic	Intergenic	-213677	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
179896	chr5	673871	674480	+	0	NA	intron (NM_007030, intron 2 of 3)	intron (NM_007030, intron 2 of 3)	19177	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
165926	chr3	107430981	107432600	+	0	NA	intron (NR_110039, intron 1 of 2)	CpG	860	NR_110039	101929607		NR_110039	ENSG00000273125	LINC01990	-	long intergenic non-protein coding RNA 1990	ncRNA
1554	chr1	3491001	3492400	+	0	NA	intron (NM_001409, intron 35 of 36)	intron (NM_001409, intron 35 of 36)	37035	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
197982	chr6	90036121	90036580	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	141881	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
55405	chr12	104472601	104472830	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	15767	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
51899	chr12	53619101	53619300	+	0	NA	intron (NR_159377, intron 1 of 14)	intron (NR_159377, intron 1 of 14)	6790	NM_001366562	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
80998	chr16	4081401	4082000	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	34742	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
55891	chr12	109720371	109720530	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	6625	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
32792	chr10	105955051	105955150	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-134767	NR_120625	101927549		NR_120625		LINC02627	-	long intergenic non-protein coding RNA 2627	ncRNA
114553	chr19	12886771	12887400	+	0	NA	exon (NM_006563, exon 1 of 3)	exon (NM_006563, exon 1 of 3)	116	NM_006563	10661		NM_006563	ENSG00000105610	KLF1	EKLF|EKLF/KLF1	KLF transcription factor 1	protein-coding
76439	chr15	74803201	74803780	+	0	NA	TTS (NM_001354988)	TTS (NM_001354988)	-9345	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
186421	chr5	135800701	135800900	+	0	NA	intron (NM_001349345, intron 3 of 9)	SATR1|Satellite|Satellite	2275	NR_049867	100847082		NR_049867	ENSG00000265924	MIR5692C1	-	microRNA 5692c-1	ncRNA
238657	chrX	154015621	154016100	+	0	NA	intron (NM_001025242, intron 10 of 13)	intron (NM_001025242, intron 10 of 13)	4042	NM_001025242	3654		NM_001569	ENSG00000184216	IRAK1	IRAK|pelle	interleukin 1 receptor associated kinase 1	protein-coding
172386	chr4	1764551	1764650	+	0	NA	Intergenic	Intergenic	-28693	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
108659	chr18	76787621	76788230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	34370	NR_040024	100131655		NR_040024	ENSG00000264278	ZNF236-DT	-	ZNF236 divergent transcript	ncRNA
174505	chr4	39965651	39965750	+	0	NA	intron (NM_001100399, intron 2 of 32)	L1MB3|LINE|L1	12211	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
4014	chr1	18932201	18932400	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	24376	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
97133	chr17	42547121	42547400	+	0	NA	Intergenic	Intergenic	-5663	NR_144397	3292		NM_000413	ENSG00000108786	HSD17B1	17-beta-HSD|20-alpha-HSD|E2DH|EDH17B2|EDHB17|HSD17|SDR28C1	hydroxysteroid 17-beta dehydrogenase 1	protein-coding
112257	chr19	5786971	5787400	+	0	NA	intron (NM_020175, intron 7 of 12)	intron (NM_020175, intron 7 of 12)	-2439	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
113369	chr19	8752471	8752630	+	0	NA	Intergenic	Intergenic	21596	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
55198	chr12	101670021	101670480	+	0	NA	intron (NM_206821, intron 21 of 28)	intron (NM_206821, intron 21 of 28)	-27390	NM_020244	56994		NM_020244	ENSG00000111666	CHPT1	CPT|CPT1	choline phosphotransferase 1	protein-coding
198833	chr6	109187771	109188200	+	0	NA	non-coding (NR_152435, exon 4 of 46)	non-coding (NR_152435, exon 4 of 46)	22154	NR_152435	221262		NM_173671	ENSG00000203799	CCDC162P	C6orf183|C6orf184|C6orf185|CCDC162	coiled-coil domain containing 162, pseudogene	pseudo
26154	chr10	14032451	14032850	+	0	NA	intron (NM_018027, intron 2 of 24)	intron (NM_018027, intron 2 of 24)	-24100	NM_001318336	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
155474	chr22	38492571	38492730	+	0	NA	intron (NM_006386, intron 10 of 12)	AluSp|SINE|Alu	13661	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
177639	chr4	121215751	121215850	+	0	NA	intron (NM_001128843, intron 2 of 12)	L2c|LINE|L2	827	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
162616	chr3	48707171	48707930	+	0	NA	intron (NM_016291, intron 1 of 5)	AluSp|SINE|Alu	9671	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
105270	chr17	82451921	82452180	+	0	NA	Intergenic	AluY|SINE|Alu	-1298	NR_036517	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
222334	chr8	133526071	133527500	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	45102	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
69235	chr14	92795521	92795780	+	0	NA	intron (NM_005113, intron 1 of 12)	L2b|LINE|L2	1345	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
84098	chr16	29628851	29629980	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-15698	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
32981	chr10	110508151	110508750	+	0	NA	intron (NM_004419, intron 3 of 3)	intron (NM_004419, intron 3 of 3)	10543	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
212054	chr7	114973901	114974100	+	0	NA	intron (NM_199072, intron 3 of 4)	intron (NM_199072, intron 3 of 4)	51846	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
208002	chr7	55533021	55533970	+	0	NA	intron (NM_001321243, intron 1 of 5)	intron (NM_001321243, intron 1 of 5)	4199	NM_001321242	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
222001	chr8	130014251	130014350	+	0	NA	intron (NM_001353269, intron 1 of 10)	AluJb|SINE|Alu	2260	NM_001353262	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
21440	chr1	205449501	205450180	+	0	NA	intron (NR_103783, intron 1 of 1)	intron (NR_103783, intron 1 of 1)	-1442	NR_029893	442891		NR_029893	ENSG00000199059	MIR135B	MIRN135B|mir-135b	microRNA 135b	ncRNA
166291	chr3	112528921	112529180	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-29578	NM_001085357	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
39497	chr11	61024951	61026990	+	0	NA	Intergenic	Intergenic	54290	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
190681	chr5	181437221	181437580	+	0	NA	Intergenic	CpG	70113	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
64638	chr14	31213271	31213630	+	0	NA	Intergenic	AluJr4|SINE|Alu	-5657	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
119373	chr19	40162721	40164600	+	0	NA	Intergenic	AluJb|SINE|Alu	-27766	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
311	chr1	973501	973830	+	0	NA	intron (NM_001160184, intron 12 of 14)	intron (NM_001160184, intron 12 of 14)	7183	NM_001160184	84069		NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
132960	chr2	111468151	111468450	+	0	NA	intron (NR_024373, intron 1 of 1)	MLT2D|LTR|ERVL	26861	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
3991	chr1	18914321	18914650	+	0	NA	intron (NM_001136265, intron 5 of 8)	intron (NM_001136265, intron 5 of 8)	-11686	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
27505	chr10	32288451	32288750	+	0	NA	intron (NR_168511, intron 6 of 13)	AluSz|SINE|Alu	58558	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
56740	chr12	120131401	120131850	+	0	NA	intron (NM_006836, intron 54 of 57)	AluJr|SINE|Alu	-14872	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
6026	chr1	27105901	27106100	+	0	NA	exon (NM_003047, exon 5 of 12)	exon (NM_003047, exon 5 of 12)	49125	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
139321	chr2	219546801	219547000	+	0	NA	intron (NM_001303098, intron 3 of 5)	AluSx3|SINE|Alu	2247	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
101757	chr17	72591271	72592080	+	0	NA	intron (NR_036488, intron 1 of 3)	CpG	1129	NR_036488	100499467		NR_036488	ENSG00000227036	LINC00673	ERRLR01|HI-LNC75|HILNC75|LUCAIR1|RASON|SLNCR|SLNCR1	long intergenic non-protein coding RNA 673	ncRNA
231759	chr9	132232551	132232650	+	0	NA	intron (NM_032536, intron 5 of 7)	intron (NM_032536, intron 5 of 7)	70542	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
204612	chr7	5363451	5363750	+	0	NA	intron (NM_001080495, intron 11 of 29)	AluY|SINE|Alu	59946	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
111348	chr19	3666871	3667030	+	0	NA	intron (NM_001300849, intron 2 of 16)	intron (NM_001300849, intron 2 of 16)	33518	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
96863	chr17	42046871	42047030	+	0	NA	intron (NM_001358661, intron 1 of 2)	AluSx|SINE|Alu	3651	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
33777	chr10	122979771	122981250	+	0	NA	exon (NM_153336, exon 1 of 7)	exon (NM_153336, exon 1 of 7)	109	NM_153336	118672		NM_153336	ENSG00000179988	PSTK	C10orf89	phosphoseryl-tRNA kinase	protein-coding
179437	chr4	184384151	184384930	+	0	NA	Intergenic	Intergenic	-2234	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
79580	chr16	1000601	1000800	+	0	NA	Intergenic	Intergenic	18930	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
72494	chr15	33016571	33016930	+	0	NA	intron (NM_001277313, intron 6 of 20)	LTR52|LTR|ERVL	51424	NM_001103184	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
48736	chr12	10714771	10714930	+	0	NA	intron (NM_003651, intron 4 of 9)	AluSx|SINE|Alu	8473	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
170752	chr3	188390001	188390250	+	0	NA	intron (NM_001167671, intron 3 of 11)	intron (NM_001167671, intron 3 of 11)	177229	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
162134	chr3	46946951	46947800	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	29126	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
28597	chr10	55233301	55233730	+	0	NA	intron (NM_001354404, intron 2 of 34)	intron (NM_001354404, intron 2 of 34)	-365527	NM_001190478	100463289		NM_001190478		MTRNR2L5	HN5	MT-RNR2 like 5 (pseudogene)	pseudo
29012	chr10	63520671	63523100	+	0	NA	promoter-TSS (NM_001318154)	promoter-TSS (NM_001318154)	5	NM_001322258	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
40322	chr11	63908821	63909080	+	0	NA	exon (NM_017490, exon 18 of 18)	exon (NM_017490, exon 18 of 18)	8214	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
8604	chr1	41529171	41529530	+	0	NA	intron (NM_001127714, intron 4 of 7)	(CACCCT)n|Simple_repeat|Simple_repeat	-44667	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
127955	chr2	46564871	46565430	+	0	NA	intron (NM_012249, intron 2 of 4)	intron (NM_012249, intron 2 of 4)	15088	NR_104182	100506142		NR_104182	ENSG00000250116	RHOQ-AS1	-	RHOQ antisense RNA 1	ncRNA
122310	chr19	49121971	49122550	+	0	NA	intron (NR_103842, intron 1 of 28)	AluSp|SINE|Alu	2716	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
105543	chr17	83197371	83197530	+	0	NA	Intergenic	Intergenic	-29447	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
202856	chr6	159785101	159785300	+	0	NA	TTS (NR_002965)	TTS (NR_002965)	533	NR_002965	677812		NR_002965	ENSG00000206910	SNORA29	ACA29	small nucleolar RNA, H/ACA box 29	snoRNA
174164	chr4	36275001	36275200	+	0	NA	TTS (NR_122079)	TTS (NR_122079)	-6516	NM_001136536	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
155102	chr22	37602001	37602680	+	0	NA	Intergenic	AluJb|SINE|Alu	-6134	NM_001172687	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
94124	chr17	28227301	28228050	+	0	NA	non-coding (NR_003064, exon 2 of 2)	non-coding (NR_003064, exon 2 of 2)	1112	NR_003064	23615		NM_021093	ENSG00000290671	PYY2	-	peptide YY 2 (pseudogene)	pseudo
233700	chrX	1224771	1225330	+	0	NA	Intergenic	Intergenic	-12327	NM_001012288	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
116727	chr19	18458021	18458650	+	0	NA	intron (NM_006532, intron 5 of 11)	intron (NM_006532, intron 5 of 11)	-20202	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
164852	chr3	71050171	71051480	+	0	NA	intron (NM_001244812, intron 4 of 15)	intron (NM_001244812, intron 4 of 15)	14099	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
100423	chr17	60638721	60639180	+	0	NA	intron (NM_003620, intron 3 of 5)	intron (NM_003620, intron 3 of 5)	38757	NM_003620	8493		NM_003620	ENSG00000170836	PPM1D	IDDGIP|JDVS|PP2C-DELTA|WIP1	protein phosphatase, Mg2+/Mn2+ dependent 1D	protein-coding
193444	chr6	30487621	30488280	+	0	NA	Intergenic	LTR73|LTR|ERV1	-1559	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
18335	chr1	161197051	161197430	+	0	NA	promoter-TSS (NM_001377298)	promoter-TSS (NM_001377298)	-177	NM_001377298	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
119079	chr19	39200501	39200980	+	0	NA	exon (NM_001001414, exon 6 of 6)	exon (NM_001001414, exon 6 of 6)	3523	NM_001080468	342898		NM_001080468	ENSG00000179751	SYCN	INSSA1|SYL	syncollin	protein-coding
127605	chr2	42968071	42968230	+	0	NA	Intergenic	Intergenic	71393	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
31004	chr10	88392151	88392450	+	0	NA	intron (NM_018363, intron 4 of 6)	L1MB7|LINE|L1	191018	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
135456	chr2	161246501	161246700	+	0	NA	intron (NR_110163, intron 2 of 2)	intron (NR_110163, intron 2 of 2)	1861	NR_110163	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
141432	chr2	241001451	241001750	+	0	NA	intron (NM_001080437, intron 1 of 31)	intron (NM_001080437, intron 1 of 31)	2982	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
127861	chr2	45653421	45653950	+	0	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	2010	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
17996	chr1	160522371	160523800	+	0	NA	intron (NM_001184714, intron 1 of 7)	intron (NM_001184714, intron 1 of 7)	170	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
179868	chr5	564551	564850	+	0	NA	Intergenic	CpG	-28818	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
231931	chr9	133115371	133117200	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	4955	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
95464	chr17	36186701	36187350	+	0	NA	Intergenic	Intergenic	9281	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
218248	chr8	42149951	42150750	+	0	NA	Intergenic	L2a|LINE|L2	-2596	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
36600	chr11	6736621	6737080	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-14971	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
71696	chr15	20246701	20247100	+	0	NA	Intergenic	L2a|LINE|L2	-35844	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
177701	chr4	121950051	121950800	+	0	NA	intron (NM_001366479, intron 1 of 10)	CpG	1635	NM_001366479	7222		NM_003305	ENSG00000138741	TRPC3	SCA41|TRP3	transient receptor potential cation channel subfamily C member 3	protein-coding
124539	chr2	289701	290380	+	0	NA	Intergenic	CpG-15643	-1949	NM_001002919	285016		NM_001002919	ENSG00000189292	ALKAL2	AUGA|FAM150B|PRO1097|RGPG542	ALK and LTK ligand 2	protein-coding
132648	chr2	108727371	108728930	+	0	NA	intron (NM_006267, intron 1 of 28)	intron (NM_006267, intron 1 of 28)	8668	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
129708	chr2	70790651	70790750	+	0	NA	promoter-TSS (NM_001004311)	promoter-TSS (NM_001004311)	-57	NM_001004311	344018		NM_001004311	ENSG00000183733	FIGLA	BHLHC8|FIGALPHA|POF6	folliculogenesis specific bHLH transcription factor	protein-coding
99016	chr17	48830821	48832000	+	0	NA	intron (NM_001261395, intron 1 of 11)	CpG	375	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
113063	chr19	8195051	8196050	+	0	NA	Intergenic	Intergenic	-13820	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
219972	chr8	89759751	89760050	+	0	NA	intron (NM_001375360, intron 1 of 9)	intron (NM_001375360, intron 1 of 9)	2084	NM_003821	8767		NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor interacting serine/threonine kinase 2	protein-coding
65219	chr14	49785851	49786150	+	0	NA	3' UTR (NM_014315, exon 13 of 13)	3' UTR (NM_014315, exon 13 of 13)	17847	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
61211	chr13	49504051	49504350	+	0	NA	intron (NR_135323, intron 2 of 11)	AluJb|SINE|Alu	7144	NM_001040444	51131		NM_001040443	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
55356	chr12	104140201	104140730	+	0	NA	Intergenic	L2c|LINE|L2	-2255	NM_006166	4801		NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	nuclear transcription factor Y subunit beta	protein-coding
226795	chr9	76755371	76756000	+	0	NA	intron (NM_001308047, intron 6 of 17)	MER5A1|DNA|hAT-Charlie	-8751	NR_015342	50652		NR_015342	ENSG00000225937	PCA3	DD3|NCRNA00019|PCAT3|PRUNE2-AS1	prostate cancer associated 3	ncRNA
149423	chr21	31265451	31265750	+	0	NA	intron (NM_001353694, intron 4 of 27)	intron (NM_001353694, intron 4 of 27)	78754	NM_001353694	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
15713	chr1	151020021	151020280	+	0	NA	intron (NM_001303243, intron 3 of 5)	intron (NM_001303243, intron 3 of 5)	11701	NR_130135	58497		NM_021222	ENSG00000143363	PRUNE1	DRES-17|DRES17|H-PRUNE|HTCD37|NMIHBA|PRUNE	prune exopolyphosphatase 1	protein-coding
53762	chr12	68672421	68672980	+	0	NA	TTS (NM_015646)	TTS (NM_015646)	14159	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
183527	chr5	79774501	79774700	+	0	NA	intron (NM_153610, intron 9 of 12)	intron (NM_153610, intron 9 of 12)	84764	NM_153610	202333		NM_153610	ENSG00000164309	CMYA5	C5orf10|SPRYD2|TRIM76	cardiomyopathy associated 5	protein-coding
8421	chr1	40452021	40452280	+	0	NA	intron (NM_001369565, intron 2 of 5)	L1MC5a|LINE|L1	1674	NM_023070	65243		NM_023070	ENSG00000187801	ZFP69B	ZKSCAN23B|ZNF643|ZSCAN54B	ZFP69 zinc finger protein B	protein-coding
140434	chr2	233129201	233129830	+	0	NA	intron (NM_001017915, intron 4 of 26).2	intron (NM_001017915, intron 4 of 26).2	69173	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
111955	chr19	4812971	4813330	+	0	NA	Intergenic	Intergenic	18562	NM_001385680	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
159384	chr3	13411671	13412030	+	0	NA	intron (NM_024923, intron 1 of 39)	AluSq2|SINE|Alu	8472	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
178202	chr4	142474701	142475100	+	0	NA	promoter-TSS (NM_001385340)	promoter-TSS (NM_001385340)	-479	NM_001385340	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
235290	chrX	42093871	42094230	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-170496	NM_001367721	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
170556	chr3	186788751	186789300	+	0	NA	TTS (NM_181573)	TTS (NM_181573)	1412	NR_002588	619568		NR_002588	ENSG00000263776	SNORA4	ACA4	small nucleolar RNA, H/ACA box 4	snoRNA
45125	chr11	117183301	117183500	+	0	NA	intron (NM_001040455, intron 6 of 25)	AluSq2|SINE|Alu	4657	NM_001040455	51092		NM_015996	ENSG00000149577	SIDT2	CGI-40	SID1 transmembrane family member 2	protein-coding
175918	chr4	80201501	80202700	+	0	NA	exon (NM_001099403, exon 4 of 4)	exon (NM_001099403, exon 4 of 4)	4597	NM_001099403	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
171653	chr3	197656871	197657300	+	0	NA	Intergenic	Intergenic	17491	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
17581	chr1	156847501	156847980	+	0	NA	intron (NM_014215, intron 7 of 21)	intron (NM_014215, intron 7 of 21)	11377	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
48532	chr12	10208471	10209030	+	0	NA	Intergenic	AluSx|SINE|Alu	-4127	NM_001363598	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
237733	chrX	127362571	127362730	+	0	NA	Intergenic	L1HS|LINE|L1	542921	NM_001122716	100130613		NM_001122716	ENSG00000183631	PRR32	CXorf64	proline rich 32	protein-coding
111605	chr19	4101701	4101900	+	0	NA	intron (NM_030662, intron 4 of 10)	CpG	22322	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
163211	chr3	50241971	50243060	+	0	NA	intron (NM_001282618, intron 1 of 7)	intron (NM_001282618, intron 1 of 7)	-4395	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
118408	chr19	35753621	35753880	+	0	NA	TTS (NM_144617)	TTS (NM_144617)	3279	NM_144617	126393		NM_144617	ENSG00000004776	HSPB6	HEL55|Hsp20|PPP1R91	heat shock protein family B (small) member 6	protein-coding
114085	chr19	11106901	11107100	+	0	NA	intron (NM_001195803, intron 4 of 15)	AluSx|SINE|Alu	-6474	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
112814	chr19	7507271	7507430	+	0	NA	intron (NM_198534, intron 8 of 8)	AluSx|SINE|Alu	-8753	NM_018083	140467		NM_018083	ENSG00000198816	ZNF358	ZFEND	zinc finger protein 358	protein-coding
152894	chr22	22728401	22728680	+	0	NA	Intergenic	L1M5|LINE|L1	82228	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
115483	chr19	15369051	15370200	+	0	NA	intron (NM_005858, intron 8 of 13)	intron (NM_005858, intron 8 of 13)	10162	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
10525	chr1	66942351	66942450	+	0	NA	intron (NM_001350530, intron 5 of 15)	intron (NM_001350530, intron 5 of 15)	12144	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
171903	chr4	824051	824400	+	0	NA	intron (NM_006651, intron 2 of 3)	intron (NM_006651, intron 2 of 3)	1904	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
193007	chr6	28218201	28219000	+	0	NA	non-coding (NR_002936, exon 1 of 1)	non-coding (NR_002936, exon 1 of 1)	329	NR_002936	222699		NR_002936		TOB2P1	TOB2P|TOB4p|p373c6.3	transducer of ERBB2, 2 pseudogene 1	pseudo
100231	chr17	59329401	59330310	+	0	NA	Intergenic	Intergenic	-1800	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
62470	chr13	99371951	99372850	+	0	NA	intron (NR_026644, intron 8 of 8)	intron (NR_026644, intron 8 of 8)	16269	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
44490	chr11	105099751	105100680	+	0	NA	intron (NM_001007232, intron 2 of 3)	intron (NM_001007232, intron 2 of 3)	1216	NM_001007232	440068		NM_001007232		CARD17P	CARD17|INCA	caspase recruitment domain family member 17, pseudogene	pseudo
130309	chr2	84941201	84942080	+	0	NA	Intergenic	AluJb|SINE|Alu	-29521	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
167998	chr3	136754071	136754430	+	0	NA	Intergenic	AluSx|SINE|Alu	-1872	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
89862	chr16	89632621	89633200	+	0	NA	intron (NM_004413, intron 2 of 10)	FRAM|SINE|Alu	12313	NM_004413	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
200307	chr6	132827301	132827600	+	0	NA	Intergenic	AluSx|SINE|Alu	10231	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
218139	chr8	41716271	41716430	+	0	NA	intron (NM_020475, intron 13 of 41)	intron (NM_020475, intron 13 of 41)	-51076	NM_020480	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
109434	chr19	719921	721280	+	0	NA	intron (NM_002579, intron 1 of 8)	CpG	11665	NM_002579	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
98797	chr17	48240351	48240450	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-53947	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
16789	chr1	155538701	155539300	+	0	NA	intron (NM_018489, intron 1 of 27)	intron (NM_018489, intron 1 of 27)	-23042	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
159230	chr3	12909721	12909980	+	0	NA	intron (NM_014869, intron 10 of 13)	intron (NM_014869, intron 10 of 13)	-24639	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
172628	chr4	2525721	2525980	+	0	NA	Intergenic	AluY|SINE|Alu	-9525	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
171754	chr3	198157001	198158000	+	0	NA	non-coding (NR_146164, exon 3 of 18)	non-coding (NR_146164, exon 3 of 18)	4294	NR_146164	728262		NM_001145248	ENSG00000290937	FAM157A	GTF2IP18	family with sequence similarity 157 member A	ncRNA
189060	chr5	170257101	170257300	+	0	NA	intron (NM_005565, intron 16 of 20)	LTR85c|LTR|Gypsy?	24194	NM_001305393	133874		NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
158920	chr3	10017801	10018200	+	0	NA	non-coding (NR_002786, exon 3 of 3)	non-coding (NR_002786, exon 3 of 3)	-6752	NM_018447	55831		NM_018447	ENSG00000125037	EMC3	POB|TMEM111	ER membrane protein complex subunit 3	protein-coding
75158	chr15	64630221	64630480	+	0	NA	intron (NM_015042, intron 3 of 9)	AluSx1|SINE|Alu	72931	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
111861	chr19	4633101	4633830	+	0	NA	Intergenic	MIR3|SINE|MIR	-6051	NM_152362	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
76087	chr15	72486501	72487100	+	0	NA	intron (NM_005744, intron 1 of 13)	AluSx|SINE|Alu	12470	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
30695	chr10	80529251	80529790	+	0	NA	TTS (NR_120661)	TTS (NR_120661)	6422	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
66283	chr14	61380921	61382200	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	60117	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
168353	chr3	141885551	141886830	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	9547	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
9088	chr1	45009221	45009480	+	0	NA	intron (NM_024602, intron 6 of 20)	intron (NM_024602, intron 6 of 20)	1974	NM_024602	79654		NM_024602	ENSG00000126107	HECTD3	-	HECT domain E3 ubiquitin protein ligase 3	protein-coding
88451	chr16	84952171	84952980	+	0	NA	Intergenic	Intergenic	58960	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
67486	chr14	70918671	70919130	+	0	NA	intron (NM_014982, intron 1 of 35)	AluJr|SINE|Alu	11441	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
125821	chr2	24314151	24314600	+	0	NA	intron (NM_147152, intron 3 of 29)	MIR|SINE|MIR	46161	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
123181	chr19	52337151	52337250	+	0	NA	intron (NM_001161425, intron 1 of 5)	intron (NM_001161425, intron 1 of 5)	955	NM_001161426	162963		NM_173530	ENSG00000167554	ZNF610	-	zinc finger protein 610	protein-coding
71859	chr15	22262321	22263180	+	0	NA	intron (NR_033735, intron 1 of 2)	L1MB7|LINE|L1	4136	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
75851	chr15	69535251	69535350	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-26420	NR_026979	145837		NR_026979	ENSG00000245750	DRAIC	-	downregulated RNA in cancer, inhibitor of cell invasion and migration	ncRNA
181738	chr5	50695251	50695350	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	27886	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
44465	chr11	104967371	104967760	+	0	NA	intron (NM_033306, intron 1 of 9)	intron (NM_033306, intron 1 of 9)	1009	NM_001225	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
53566	chr12	67633071	67633230	+	0	NA	Intergenic	MIR|SINE|MIR	-15595	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
57764	chr12	122984001	122984230	+	0	NA	3' UTR (NM_020845, exon 26 of 26)	3' UTR (NM_020845, exon 26 of 26)	4055	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
93919	chr17	21291171	21292550	+	0	NA	intron (NM_002756, intron 1 of 11)	intron (NM_002756, intron 1 of 11)	3824	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
69058	chr14	91880751	91881400	+	0	NA	intron (NM_001384161, intron 10 of 12)	MER112|DNA|hAT-Charlie	-13539	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
49894	chr12	39380301	39380700	+	0	NA	intron (NM_001378440, intron 1 of 36)	intron (NM_001378440, intron 1 of 36)	62620	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
77477	chr15	84525571	84525930	+	0	NA	Intergenic	Intergenic	-8903	NR_003246	374650		NM_198079		GOLGA6L5P	GOLGA6L5|GOLGA6L8	golgin A6 family like 5, pseudogene	pseudo
148921	chr21	9128221	9128700	+	0	NA	intron (NR_038329, intron 1 of 2)	MLT1H|LTR|ERVL-MaLR	1301	NR_038327	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
30660	chr10	80483671	80484330	+	0	NA	intron (NM_001351272, intron 2 of 9)	AluSz|SINE|Alu	15759	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
176175	chr4	83286601	83286800	+	0	NA	Intergenic	Intergenic	-1566	NM_015697	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
149231	chr21	25567401	25567680	+	0	NA	intron (NR_001458, intron 1 of 2)	L2c|LINE|L2	5395	NR_001458	114614		NR_001458	ENSG00000234883	MIR155HG	BIC|BIC-155|MIRHG2|NCRNA00172|miPEP155	MIR155 host gene	ncRNA
66076	chr14	58834551	58834650	+	0	NA	intron (NR_110547, intron 1 of 5)	LTR12C|LTR|ERV1	6312	NR_110547	102723742		NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
237634	chrX	124086321	124087200	+	0	NA	exon (NM_001375375, exon 29 of 33)	exon (NM_001375375, exon 29 of 33)	125054	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
238422	chrX	150692351	150694600	+	0	NA	promoter-TSS (NM_001353990)	promoter-TSS (NM_001353990)	79	NM_001306144	8776		NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
134807	chr2	148201371	148201600	+	0	NA	intron (NM_018328, intron 3 of 14)	LTR28C|LTR|ERV1	-179881	NM_181742	5000		NM_002552	ENSG00000115947	ORC4	ORC4L|ORC4P	origin recognition complex subunit 4	protein-coding
33531	chr10	119237771	119238330	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	30479	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
156369	chr22	41053151	41053650	+	0	NA	Intergenic	AluJo|SINE|Alu	20321	NR_132979	106635682		NR_132979		SNORD140	-	small nucleolar RNA, C/D box 140	snoRNA
204809	chr7	5665201	5665980	+	0	NA	intron (NR_046834, intron 2 of 2)	intron (NR_046834, intron 2 of 2)	14871	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
228153	chr9	96930401	96931000	+	0	NA	intron (NM_001045477, intron 1 of 6)	intron (NM_001045477, intron 1 of 6)	1857	NM_001045477	441457		NM_001024597	ENSG00000188152	NUTM2G	FAM22G|NUTMG	NUT family member 2G	protein-coding
210517	chr7	100216751	100218450	+	0	NA	intron (NR_028038, intron 5 of 6)	LTR13|LTR|ERVK	-1648	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
236888	chrX	83542601	83542890	+	0	NA	Intergenic	L1HS|LINE|L1	34455	NM_000307	5456		NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
32596	chr10	103553801	103554200	+	0	NA	intron (NM_004210, intron 1 of 5)	MIRc|SINE|MIR	-36558	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
168059	chr3	137013921	137014400	+	0	NA	Intergenic	Intergenic	56177	NM_144717	53833		NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
132305	chr2	105237771	105238450	+	0	NA	Intergenic	Intergenic	-3633	NM_007227	11250		NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
164919	chr3	71156921	71157180	+	0	NA	intron (NM_001244810, intron 6 of 20)	Plat_L3|LINE|CR1	-24853	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
23698	chr1	231605251	231605630	+	0	NA	intron (NR_034037, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	6650	NR_034037	100287814		NR_034037	ENSG00000229228	LINC00582	SMILO	long intergenic non-protein coding RNA 582	ncRNA
31192	chr10	91215601	91215800	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-4451	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
134586	chr2	144262801	144263400	+	0	NA	intron (NR_164806, intron 1 of 11)	MIR|SINE|MIR	-14401	NR_148872	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
167966	chr3	136690621	136691000	+	0	NA	intron (NM_005862, intron 1 of 33)	ERV24B_Prim-int|LTR|ERV1	61568	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
151538	chr21	46502251	46502550	+	0	NA	intron (NM_001146115, intron 5 of 19)	AluJo|SINE|Alu	39929	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
78871	chr15	100572421	100572900	+	0	NA	non-coding (NR_148019, exon 6 of 7)	non-coding (NR_148019, exon 6 of 7)	-13377	NR_073405	441733		NR_073405		PRKXP1	-	PRKX pseudogene 1	pseudo
22362	chr1	215567251	215568030	+	0	NA	5' UTR (NM_001319294, exon 1 of 18)	5' UTR (NM_001319294, exon 1 of 18)	336	NM_001319295	51133		NM_016121	ENSG00000136636	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
219294	chr8	69690051	69690330	+	0	NA	intron (NM_030958, intron 6 of 9)	LSU-rRNA_Hsa|rRNA|rRNA	97290	NR_132437	23213		NM_015170	ENSG00000137573	SULF1	SULF-1	sulfatase 1	protein-coding
75396	chr15	65758151	65758500	+	0	NA	intron (NM_001376920, intron 1 of 30)	AluJo|SINE|Alu	33968	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
130003	chr2	74149151	74149250	+	0	NA	TTS (NR_045637)	TTS (NR_045637)	1219	NR_045636	100507171		NR_045634	ENSG00000225439	BOLA3-DT	BOLA3-AS1	BOLA3 divergent transcript	ncRNA
209410	chr7	76346801	76347200	+	0	NA	intron (NM_012479, intron 1 of 1)	L2c|LINE|L2	11991	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
78178	chr15	90539651	90540230	+	0	NA	intron (NM_001042574, intron 1 of 14)	intron (NM_001042574, intron 1 of 14)	10017	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
234169	chrX	11757401	11758900	+	0	NA	promoter-TSS (NM_001193270)	promoter-TSS (NM_001193270)	-9	NM_001282174	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
156063	chr22	39994621	39995730	+	0	NA	exon (NM_138435, exon 1 of 5)	exon (NM_138435, exon 1 of 5)	221	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
229025	chr9	114153821	114154650	+	0	NA	Intergenic	CpG	-1302	NM_032888	85301		NM_032161	ENSG00000196739	COL27A1	STLS	collagen type XXVII alpha 1 chain	protein-coding
192578	chr6	25881971	25882730	+	0	NA	Intergenic	Intergenic	-8107	NM_006632	10786		NM_006632	ENSG00000124564	SLC17A3	GOUT4|NPT4|UAQTL4	solute carrier family 17 member 3	protein-coding
104167	chr17	80411501	80411700	+	0	NA	intron (NR_029376, intron 1 of 1)	Harlequin-int|LTR|ERV1	-3567	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
137610	chr2	197298721	197299350	+	0	NA	intron (NR_046837, intron 3 of 5)	L1MC5|LINE|L1	3484	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
87857	chr16	77190421	77191730	+	0	NA	promoter-TSS (NM_001286640)	promoter-TSS (NM_001286640)	-115	NM_014940	22879		NM_014940	ENSG00000103111	MON1B	HSRG1|SAND2|SRG1	MON1 homolog B, secretory trafficking associated	protein-coding
74519	chr15	60396621	60398400	+	0	NA	intron (NM_001002857, intron 1 of 13)	intron (NM_001002857, intron 1 of 13)	476	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
34886	chr11	373171	374000	+	0	NA	intron (NM_178537, intron 7 of 19)	intron (NM_178537, intron 7 of 19)	4086	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
237116	chrX	104922051	104922430	+	0	NA	intron (NM_017416, intron 2 of 10)	L1PA15-16|LINE|L1	298454	NM_001291277	56157		NM_031274	ENSG00000268629	TEX13A	-	testis expressed 13A	protein-coding
51656	chr12	53046501	53048280	+	0	NA	intron (NM_198316, intron 1 of 28)	CpG	399	NM_198316	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
186233	chr5	134399251	134399350	+	0	NA	Intergenic	Intergenic	12581	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
11424	chr1	89739051	89740830	+	0	NA	Intergenic	L1MC1|LINE|L1	-81092	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
85471	chr16	50683371	50684480	+	0	NA	Intergenic	Intergenic	-2613	NM_001144972	124460		NM_153337	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
194332	chr6	32850021	32850430	+	0	NA	intron (NM_001292022, intron 5 of 10).7	intron (NM_001292022, intron 5 of 10).7	2536	NM_001292022	6890		NM_000593	ENSG00000168394	TAP1	ABC17|ABCB2|APT1|D6S114E|PSF-1|PSF1|RING4|TAP1*0102N|TAP1N	transporter 1, ATP binding cassette subfamily B member	protein-coding
81479	chr16	8933721	8933980	+	0	NA	intron (NM_003470, intron 1 of 30)	AluSz|SINE|Alu	2789	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
223715	chr8	144456151	144457680	+	0	NA	intron (NM_138496, intron 2 of 4)	intron (NM_138496, intron 2 of 4)	5624	NR_162109	113218512		NR_162109		MIR10400	-	microRNA 10400	ncRNA
97705	chr17	44328051	44328450	+	0	NA	Intergenic	Intergenic	-3380	NM_001321240	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
183370	chr5	77232751	77233050	+	0	NA	intron (NM_001029853, intron 1 of 20)	intron (NM_001029853, intron 1 of 20)	22220	NM_003719	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
185106	chr5	119270871	119271200	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	2276	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
52232	chr12	54395871	54396230	+	0	NA	3' UTR (NM_002205, exon 30 of 30)	3' UTR (NM_002205, exon 30 of 30)	-4752	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
183845	chr5	87034671	87035030	+	0	NA	Intergenic	L1PBa|LINE|L1	80104	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
6620	chr1	28889401	28890100	+	0	NA	intron (NM_001376022, intron 1 of 20)	intron (NM_001376022, intron 1 of 20)	2650	NM_001376023	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
19109	chr1	171494601	171495180	+	0	NA	intron (NM_015172, intron 1 of 33)	intron (NM_015172, intron 1 of 33)	9360	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
207780	chr7	50209321	50210200	+	0	NA	Intergenic	Intergenic	-94304	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
106925	chr18	26217421	26217880	+	0	NA	Intergenic	AluSx|SINE|Alu	-8795	NR_121653	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
92366	chr17	8201921	8202200	+	0	NA	Intergenic	AluSz|SINE|Alu	8165	NR_132731	9212		NM_004217	ENSG00000178999	AURKB	AIK2|AIM-1|AIM1|ARK-2|ARK2|AurB|IPL1|PPP1R48|STK-1|STK12|STK5|aurkb-sv1|aurkb-sv2	aurora kinase B	protein-coding
90803	chr17	2218401	2218600	+	0	NA	intron (NM_001256827, intron 3 of 11)	AluY|SINE|Alu	-14178	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
210760	chr7	100686071	100686880	+	0	NA	intron (NR_164719, intron 11 of 26)	intron (NR_164719, intron 11 of 26)	7775	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
12626	chr1	109113501	109114780	+	0	NA	promoter-TSS (NM_001284352)	promoter-TSS (NM_001284352)	25	NM_001267048	57535		NM_020775	ENSG00000116299	ELAPOR1	EIG121|KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein-coding
210491	chr7	100167201	100167580	+	0	NA	intron (NM_024637, intron 1 of 3)	intron (NM_024637, intron 1 of 3)	1227	NM_024637	79690		NM_024637	ENSG00000197093	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
102016	chr17	74791071	74791980	+	0	NA	intron (NM_017728, intron 6 of 9)	intron (NM_017728, intron 6 of 9)	15026	NM_017728	54868		NM_017728	ENSG00000109066	TMEM104	SLC38A12	transmembrane protein 104	protein-coding
179341	chr4	182938071	182938650	+	0	NA	Intergenic	Intergenic	-20883	NM_001921	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
153727	chr22	29300901	29302130	+	0	NA	TTS (NM_013986)	TTS (NM_013986)	-5508	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
65707	chr14	52790971	52792530	+	0	NA	promoter-TSS (NM_198066)	promoter-TSS (NM_198066)	-143	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
127348	chr2	39123921	39125180	+	0	NA	intron (NM_001382394, intron 1 of 22)	CpG	318	NM_001382394	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
226478	chr9	71752271	71752430	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	16163	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
212830	chr7	130463871	130464040	+	0	NA	Intergenic	Intergenic	-22220	NM_177524	4232		NM_002402	ENSG00000106484	MEST	PEG1	mesoderm specific transcript	protein-coding
327	chr1	985421	986080	+	0	NA	Intergenic	MER4A1_|LTR|ERV1	-3657	NM_001291366	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
119097	chr19	39308501	39308700	+	0	NA	intron (NM_020862, intron 4 of 4)	CpG	12193	NM_172140	282618		NM_172140	ENSG00000182393	IFNL1	IL-29|IL29	interferon lambda 1	protein-coding
52454	chr12	55938851	55939430	+	0	NA	intron (NM_201554, intron 7 of 23)	intron (NM_201554, intron 7 of 23)	3132	NM_001351037	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
159017	chr3	10552021	10552700	+	0	NA	intron (NM_001353564, intron 1 of 20)	intron (NM_001353564, intron 1 of 20)	-46774	NM_001001331	491		NM_001683	ENSG00000157087	ATP2B2	DFNA82|PMCA2|PMCA2a|PMCA2i	ATPase plasma membrane Ca2+ transporting 2	protein-coding
202580	chr6	158691121	158691950	+	0	NA	intron (NM_001318745, intron 3 of 14)	intron (NM_001318745, intron 3 of 14)	28132	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
124728	chr2	4577751	4577850	+	0	NA	Intergenic	Intergenic	78422	NR_034134	727982		NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
112081	chr19	5338001	5338200	+	0	NA	intron (NM_130853, intron 1 of 28)	intron (NM_130853, intron 1 of 28)	2712	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
73571	chr15	44432121	44432580	+	0	NA	intron (NM_016396, intron 1 of 12)	AluSg|SINE|Alu	4721	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
67260	chr14	69117301	69117900	+	0	NA	intron (NM_001284208, intron 4 of 6)	intron (NM_001284208, intron 4 of 6)	34999	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
198443	chr6	106108771	106109630	+	0	NA	3' UTR (NM_001198, exon 7 of 7)	3' UTR (NM_001198, exon 7 of 7)	10259	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
214499	chr7	150449551	150449650	+	0	NA	Intergenic	Intergenic	-1030	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
37437	chr11	17504251	17504900	+	0	NA	intron (NR_123738, intron 14 of 19)	intron (NR_123738, intron 14 of 19)	-27730	NM_000352	6833		NM_000352	ENSG00000006071	ABCC8	ABC36|HHF1|HI|HRINS|MRP8|PHHI|PNDM3|SUR|SUR1|SUR1delta2|TNDM2	ATP binding cassette subfamily C member 8	protein-coding
12448	chr1	107785721	107787230	+	0	NA	intron (NM_006113, intron 2 of 26)	MIR|SINE|MIR	-97976	NM_001079874	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
199675	chr6	122467901	122468530	+	0	NA	intron (NM_020755, intron 1 of 9)	HAL1b|LINE|L1	3592	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
187894	chr5	148829401	148829600	+	0	NA	TTS (NM_000024)	TTS (NM_000024)	2889	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
24937	chr10	1220071	1220230	+	0	NA	intron (NM_018702, intron 6 of 9)	intron (NM_018702, intron 6 of 9)	60382	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
101700	chr17	68465901	68466500	+	0	NA	intron (NM_001278433, intron 1 of 10)	LTR88a|LTR|Gypsy?	-8676	NR_135470	55062		NM_017983	ENSG00000070540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
167612	chr3	129575251	129575550	+	0	NA	intron (NM_015103, intron 11 of 35)	intron (NM_015103, intron 11 of 35)	27015	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
59975	chr13	32234921	32235180	+	0	NA	intron (NM_023037, intron 42 of 60)	intron (NM_023037, intron 42 of 60)	80313	NM_001136571	646799		NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1 like	protein-coding
180088	chr5	1118451	1119100	+	0	NA	Intergenic	Intergenic	-6712	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
202669	chr6	158785171	158785600	+	0	NA	exon (NM_001111077, exon 5 of 14)	exon (NM_001111077, exon 5 of 14)	-20632	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
78669	chr15	94950721	94950800	+	0	NA	Intergenic	AluSx|SINE|Alu	95397	NR_077061	440311		NR_077061	ENSG00000277654	LOC440311	-	NOP53 ribosome biogenesis factor pseudogene	pseudo
20814	chr1	201254521	201255000	+	0	NA	Intergenic	Intergenic	-28692	NM_000299	5317		NM_000299	ENSG00000081277	PKP1	B6P|EDSFS	plakophilin 1	protein-coding
132667	chr2	108767771	108768250	+	0	NA	exon (NM_006267, exon 20 of 29)	exon (NM_006267, exon 20 of 29)	-18740	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
67295	chr14	69483901	69484100	+	0	NA	promoter-TSS (NM_001161498)	promoter-TSS (NM_001161498)	-728	NM_001161498	400224		NM_001161498	ENSG00000175985	PLEKHD1	UPF0639	pleckstrin homology and coiled-coil domain containing D1	protein-coding
19307	chr1	173174971	173175130	+	0	NA	Intergenic	Intergenic	30482	NM_001297562	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
144403	chr20	35274401	35275030	+	0	NA	3' UTR (NM_006690, exon 9 of 9)	3' UTR (NM_006690, exon 9 of 9)	3407	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
145005	chr20	37627071	37627300	+	0	NA	Intergenic	Intergenic	-4066	NR_047461	100861522		NR_047461	ENSG00000225759	LINC00489	-	long intergenic non-protein coding RNA 489	ncRNA
181390	chr5	40677971	40678500	+	0	NA	Intergenic	Intergenic	-1680	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
218267	chr8	42245621	42246330	+	0	NA	Intergenic	L1ME3G|LINE|L1	24986	NR_125823	101929897		NR_125823	ENSG00000253408	IKBKB-DT	ALAL-1|IKBKBAS	IKBKB divergent transcript	ncRNA
62063	chr13	92806171	92806530	+	0	NA	intron (NM_004466, intron 7 of 7)	Tigger1|DNA|TcMar-Tigger	-84736	NR_046520	100873969		NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
72267	chr15	30650071	30650630	+	0	NA	intron (NR_038253, intron 2 of 5)	LOR1a|LTR|ERV1	4235	NR_038253	100288637		NR_038253	ENSG00000187951	LOC100288637	-	OTU deubiquitinase 7A pseudogene	pseudo
179847	chr5	493821	494280	+	0	NA	intron (NM_001284351, intron 1 of 16)	intron (NM_001284351, intron 1 of 16)	20814	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
400	chr1	1058071	1058230	+	0	NA	Intergenic	Intergenic	-1584	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
81600	chr16	10496401	10496680	+	0	NA	Intergenic	AluSz|SINE|Alu	31658	NR_149081	106144584		NR_149081	ENSG00000260468	LINC01290	-	long intergenic non-protein coding RNA 1290	ncRNA
138106	chr2	202274301	202275300	+	0	NA	intron (NM_015934, intron 1 of 14)	intron (NM_015934, intron 1 of 14)	-1631	NR_003058	692110		NR_003058	ENSG00000212534	SNORD70	HBII-234|SNORD70A	small nucleolar RNA, C/D box 70	snoRNA
41598	chr11	66369321	66369580	+	0	NA	exon (NM_001532, exon 3 of 12)	exon (NM_001532, exon 3 of 12)	2310	NM_001532	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
146606	chr20	50146201	50147580	+	0	NA	intron (NM_199129, intron 1 of 5)	intron (NM_199129, intron 1 of 5)	6833	NM_001162505	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
210336	chr7	99502301	99502500	+	0	NA	Intergenic	AluSp|SINE|Alu	-2092	NM_001345968	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
9679	chr1	52842631	52843700	+	0	NA	intron (NM_001307931, intron 1 of 12)	CpG	405	NM_001004339	440590		NM_001004339	ENSG00000203995	ZYG11A	ZYG11	zyg-11 family member A, cell cycle regulator	protein-coding
155285	chr22	38105571	38105730	+	0	NA	intron (NM_025045, intron 4 of 13)	L2a|LINE|L2	5034	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
125570	chr2	16235051	16235150	+	0	NA	Intergenic	L1PA3|LINE|L1	184673	NR_126559	104797537		NR_126559	ENSG00000236289	GACAT3	LINC01458|lncRNA-AC130710	gastric cancer associated transcript 3	ncRNA
230161	chr9	127767201	127767800	+	0	NA	intron (NM_001252334, intron 1 of 11)	intron (NM_001252334, intron 1 of 11)	3794	NM_005489	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
238600	chrX	153921671	153922500	+	0	NA	intron (NM_001164741, intron 1 of 22)	intron (NM_001164741, intron 1 of 22)	4179	NM_001164741	393		NM_001666	ENSG00000089820	ARHGAP4	C1|RGC1|RhoGAP4|SrGAP4|p115	Rho GTPase activating protein 4	protein-coding
175692	chr4	77067371	77068250	+	0	NA	intron (NM_006835, intron 1 of 6)	(A)n|Simple_repeat|Simple_repeat	7100	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
192986	chr6	28083051	28083480	+	0	NA	intron (NM_003447, intron 1 of 3)	LTR10A|LTR|ERV1	2697	NM_001376492	7718		NM_003447	ENSG00000197279	ZNF165	CT53|LD65|ZSCAN7	zinc finger protein 165	protein-coding
27673	chr10	33103221	33103680	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	13357	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
108898	chr18	79423571	79423730	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	23351	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
118064	chr19	34310271	34310980	+	0	NA	intron (NM_014686, intron 2 of 13)	intron (NM_014686, intron 2 of 13)	-54115	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
10899	chr1	82830771	82830930	+	0	NA	Intergenic	Intergenic	-72333	NR_147074	103283057		NR_147074	ENSG00000230817	LINC01362	-	long intergenic non-protein coding RNA 1362	ncRNA
86004	chr16	57471421	57471900	+	0	NA	TTS (NM_018110)	TTS (NM_018110)	8097	NM_001369621	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
220056	chr8	93751101	93751900	+	0	NA	Intergenic	Intergenic	-3344	NM_001142301	91147		NM_153704	ENSG00000164953	TMEM67	JBTS6|MECKELIN|MKS3|NPHP11|TNEM67	transmembrane protein 67	protein-coding
158452	chr22	50625351	50625980	+	0	NA	exon (NM_001085425, exon 8 of 9)	exon (NM_001085425, exon 8 of 9)	2487	NM_000487	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
7808	chr1	36276721	36276980	+	0	NA	intron (NM_001321471, intron 3 of 12)	AluSx|SINE|Alu	-29518	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
99193	chr17	49497401	49498300	+	0	NA	intron (NM_002507, intron 1 of 5)	CpG	2557	NM_002507	4804		NM_002507	ENSG00000064300	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
47140	chr12	748621	749080	+	0	NA	Intergenic	AluSz|SINE|Alu	-3729	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
20037	chr1	185321771	185321930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4607	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
112200	chr19	5679501	5679700	+	0	NA	exon (NM_001308240, exon 3 of 5)	exon (NM_001308240, exon 3 of 5)	638	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
13487	chr1	114718071	114718680	+	0	NA	intron (NM_001242891, intron 20 of 20)	intron (NM_001242891, intron 20 of 20)	-1604	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
134978	chr2	152594401	152594600	+	0	NA	intron (NM_052905, intron 9 of 25)	intron (NM_052905, intron 9 of 25)	122961	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
61842	chr13	76822851	76823030	+	0	NA	Intergenic	LTR41|LTR|ERVL	63465	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
146956	chr20	52402771	52403330	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-211065	NM_199427	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
24455	chr1	243842901	243843800	+	0	NA	promoter-TSS (NM_181690)	promoter-TSS (NM_181690)	-68	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
160911	chr3	34418651	34418950	+	0	NA	Intergenic	L1PA2|LINE|L1	620170	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
234010	chrX	3697201	3697400	+	0	NA	intron (NM_005044, intron 1 of 8)	AluJb|SINE|Alu	16349	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
238950	chrX	154980771	154981200	+	0	NA	intron (NM_000132, intron 6 of 25)	intron (NM_000132, intron 6 of 25)	41738	NM_000132	2157		NM_000132	ENSG00000185010	F8	AHF|DXS1253E|F8B|F8C|FVIII|HEMA|THPH13	coagulation factor VIII	protein-coding
103931	chr17	79832221	79833030	+	0	NA	TTS (NM_003655)	TTS (NM_003655)	6815	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
95297	chr17	35534321	35534750	+	0	NA	intron (NM_001363830, intron 1 of 4)	L2b|LINE|L2	3326	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
37955	chr11	34529521	34529600	+	0	NA	Intergenic	Intergenic	-15766	NM_001422	2001		NM_001422	ENSG00000135374	ELF5	ESE2	E74 like ETS transcription factor 5	protein-coding
3104	chr1	12208551	12209600	+	0	NA	3' UTR (NM_001066, exon 10 of 10)	3' UTR (NM_001066, exon 10 of 10)	17362	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
197778	chr6	87656501	87657180	+	0	NA	intron (NM_012381, intron 14 of 19)	intron (NM_012381, intron 14 of 19)	45393	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
177382	chr4	112143001	112143200	+	0	NA	Intergenic	Intergenic	-2354	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
449	chr1	1125321	1125930	+	0	NA	Intergenic	Intergenic	-9536	NM_001330306	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
111367	chr19	3695471	3695630	+	0	NA	intron (NM_001300849, intron 1 of 16)	intron (NM_001300849, intron 1 of 16)	4918	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
64014	chr14	22500671	22501400	+	0	NA	Intergenic	Intergenic	-18076	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
189119	chr5	170435021	170435350	+	0	NA	intron (NM_001034838, intron 1 of 7)	intron (NM_001034838, intron 1 of 7)	45692	NR_109899	101928033		NR_109899	ENSG00000253647	KCNIP1-OT1	CTD-2270F17.1	KCNIP1 overlapping transcript 1	ncRNA
21942	chr1	207872121	207872400	+	0	NA	Intergenic	MIRc|SINE|MIR	38865	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
861	chr1	1620451	1620650	+	0	NA	intron (NM_001170687, intron 2 of 19)	intron (NM_001170687, intron 2 of 19)	4695	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
141842	chr20	478801	479250	+	0	NA	3' UTR (NM_001895, exon 13 of 13)	3' UTR (NM_001895, exon 13 of 13)	-16492	NM_144628	128637		NM_144628	ENSG00000125875	TBC1D20	C20orf140|WARBM4	TBC1 domain family member 20	protein-coding
96425	chr17	40180551	40181280	+	0	NA	intron (NM_016339, intron 1 of 14)	intron (NM_016339, intron 1 of 14)	3445	NM_016339	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
219788	chr8	81173571	81174250	+	0	NA	Intergenic	L1M7|LINE|L1	-61842	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
125327	chr2	10791951	10792450	+	0	NA	intron (NM_001282706, intron 6 of 13)	intron (NM_001282706, intron 6 of 13)	20585	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
90071	chr16	90006721	90007200	+	0	NA	intron (NM_001371581, intron 1 of 1)	intron (NM_001371581, intron 1 of 1)	2044	NM_001371581	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
94748	chr17	30808101	30808330	+	0	NA	intron (NM_015986, intron 1 of 7)	MER5A1|DNA|hAT-Charlie	16477	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
125243	chr2	10400321	10401450	+	0	NA	intron (NM_001258358, intron 2 of 4)	intron (NM_001258358, intron 2 of 4)	32121	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
200801	chr6	137896771	137898000	+	0	NA	Intergenic	AluSp|SINE|Alu	-29152	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
96373	chr17	40103101	40103300	+	0	NA	Intergenic	Intergenic	-2611	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
24306	chr1	236759221	236759580	+	0	NA	intron (NM_001103, intron 18 of 20)	intron (NM_001103, intron 18 of 20)	-35881	NM_001291939	4548		NM_000254	ENSG00000116984	MTR	HMAG|MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
108866	chr18	79380651	79381400	+	0	NA	Intergenic	Intergenic	-14905	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
42352	chr11	68535971	68536330	+	0	NA	intron (NM_001352348, intron 3 of 24)	intron (NM_001352348, intron 3 of 24)	75398	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
43832	chr11	86919671	86919830	+	0	NA	intron (NR_120592, intron 2 of 2)	intron (NR_120592, intron 2 of 2)	35645	NM_012193	8322		NM_012193	ENSG00000174804	FZD4	CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4	frizzled class receptor 4	protein-coding
19936	chr1	184742121	184742450	+	0	NA	intron (NM_001319960, intron 2 of 20)	intron (NM_001319960, intron 2 of 20)	12573	NM_001319960	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
134301	chr2	135961801	135962000	+	0	NA	intron (NM_001293312, intron 2 of 14)	intron (NM_001293312, intron 2 of 14)	-23276	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
134034	chr2	131092201	131094130	+	0	NA	promoter-TSS (NM_001321748)	promoter-TSS (NM_001321748)	-3	NM_001321748	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
205638	chr7	22677201	22677600	+	0	NA	Intergenic	HAL1|LINE|L1	-11867	NR_122075	401312		NR_122075	ENSG00000105889	LOC401312	-	uncharacterized LOC401312	ncRNA
88110	chr16	81553301	81553700	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	19598	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
5392	chr1	25474691	25475480	+	0	NA	intron (NM_018202, intron 6 of 10)	AluYf1|SINE|Alu	44188	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
60914	chr13	46177501	46178600	+	0	NA	intron (NM_002298, intron 1 of 15)	intron (NM_002298, intron 1 of 15)	4127	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
207852	chr7	50355001	50355200	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	36052	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
94971	chr17	32253021	32253500	+	0	NA	Intergenic	Intergenic	-12572	NM_001330181	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
91946	chr17	7349751	7350800	+	0	NA	intron (NM_014716, intron 20 of 21)	CpG-10613	-1614	NM_001002914	147040		NM_001002914	ENSG00000213859	KCTD11	C17orf36|KCASH1|REN|REN/KCTD11	potassium channel tetramerization domain containing 11	protein-coding
103759	chr17	78972351	78972650	+	0	NA	exon (NM_005567, exon 6 of 6)	exon (NM_005567, exon 6 of 6)	7423	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
233757	chrX	1397021	1397280	+	0	NA	non-coding (NR_130733, exon 1 of 3)	non-coding (NR_130733, exon 1 of 3)	125	NR_130733	751580		NR_130733	ENSG00000236871	LINC00106	CXYorf8|NCRNA00106	long intergenic non-protein coding RNA 106	ncRNA
62609	chr13	100517571	100518230	+	0	NA	intron (NM_001352611, intron 20 of 21)	intron (NM_001352611, intron 20 of 21)	15902	NM_033110	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
217418	chr8	28383171	28383700	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	3025	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
215395	chr7	157485171	157485600	+	0	NA	intron (NR_110157, intron 2 of 3)	intron (NR_110157, intron 2 of 3)	19154	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
104239	chr17	80710501	80710700	+	0	NA	intron (NM_020761, intron 4 of 33)	(TG)n|Simple_repeat|Simple_repeat	95032	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
234237	chrX	13074521	13075050	+	0	NA	Intergenic	Intergenic	-30165	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
75026	chr15	64095611	64097450	+	0	NA	intron (NM_001242933, intron 1 of 14)	intron (NM_001242933, intron 1 of 14)	548	NM_003099	6642		NM_003099	ENSG00000028528	SNX1	HsT17379|VPS5	sorting nexin 1	protein-coding
15504	chr1	150466351	150466450	+	0	NA	intron (NM_015203, intron 10 of 10)	AluJo|SINE|Alu	-21019	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
34201	chr10	129057571	129058380	+	0	NA	Intergenic	Intergenic	145142	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
39264	chr11	57745801	57746200	+	0	NA	exon (NM_001145101, exon 3 of 3)	exon (NM_001145101, exon 3 of 3)	4509	NM_170746	280636		NM_170746	ENSG00000211450	SELENOH	C11orf31|C17orf10|SELH	selenoprotein H	protein-coding
68207	chr14	76872801	76873780	+	0	NA	Intergenic	Intergenic	46882	NR_169572	145497		NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
38138	chr11	35330451	35331450	+	0	NA	intron (NM_001195728, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	88608	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
78003	chr15	89665651	89666030	+	0	NA	exon (NM_001145311, exon 9 of 9)	exon (NM_001145311, exon 9 of 9)	-10373	NM_198525	374654		NM_198525	ENSG00000166813	KIF7	ACLS|AGBK|HLS2|JBTS12|MMEDF|UNQ340	kinesin family member 7	protein-coding
94302	chr17	28738621	28739280	+	0	NA	intron (NM_178170, intron 9 of 14)	intron (NM_178170, intron 9 of 14)	-5061	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
217685	chr8	30115171	30115530	+	0	NA	intron (NM_001128208, intron 3 of 3)	AluSx1|SINE|Alu	19942	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
200665	chr6	137154721	137154980	+	0	NA	intron (NM_052962, intron 5 of 6)	MIRb|SINE|MIR	18794	NM_181309	116379		NM_052962	ENSG00000164485	IL22RA2	CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16	interleukin 22 receptor subunit alpha 2	protein-coding
40104	chr11	62807371	62807730	+	0	NA	exon (NM_001330294, exon 11 of 11)	exon (NM_001330294, exon 11 of 11)	-2110	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
58866	chr12	133180221	133180580	+	0	NA	Intergenic	L1PB4|LINE|L1	-1095	NM_001165886	10795		NM_003415	ENSG00000090612	ZNF268	HZF3	zinc finger protein 268	protein-coding
73620	chr15	44577051	44577350	+	0	NA	intron (NM_025137, intron 30 of 39)	intron (NM_025137, intron 30 of 39)	40053	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
38831	chr11	47314021	47314280	+	0	NA	intron (NM_001376612, intron 26 of 31)	AluJr|SINE|Alu	38552	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
179525	chr4	184824271	184824740	+	0	NA	intron (NM_001381885, intron 1 of 21)	intron (NM_001381885, intron 1 of 21)	1463	NM_001995	2180		NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long chain family member 1	protein-coding
193834	chr6	31496901	31498850	+	0	NA	promoter-TSS (NM_001289161).2	promoter-TSS (NM_001289161).2	-270	NM_005931	4277		NM_005931	ENSG00000204516	MICB	PERB11.2	MHC class I polypeptide-related sequence B	protein-coding
64837	chr14	35125821	35126080	+	0	NA	intron (NM_001256678, intron 2 of 6)	AluJb|SINE|Alu	3398	NM_001256679	9692		NM_014672	ENSG00000100890	PRORP	COXPD54|KIAA0391|MRPP3	protein only RNase P catalytic subunit	protein-coding
69126	chr14	92533471	92533630	+	0	NA	intron (NM_024832, intron 1 of 9)	L1PB1|LINE|L1	19769	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
232533	chr9	136335521	136335780	+	0	NA	intron (NM_015597, intron 2 of 8)	intron (NM_015597, intron 2 of 8)	8111	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
107737	chr18	50267971	50268760	+	0	NA	TTS (NM_002384)	TTS (NM_002384)	-1870	NM_145020	220136		NM_145020	ENSG00000172361	CFAP53	CCDC11|HTX6	cilia and flagella associated protein 53	protein-coding
159317	chr3	13013701	13014600	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-27049	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
119397	chr19	40231471	40232130	+	0	NA	3' UTR (NM_001330511, exon 12 of 12)	3' UTR (NM_001330511, exon 12 of 12)	-5111	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
237739	chrX	129504201	129504400	+	0	NA	intron (NM_001378264, intron 9 of 23)	L2|LINE|L2	19190	NM_003069	6594		NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
133832	chr2	128024751	128025250	+	0	NA	intron (NM_024545, intron 2 of 19)	AluJb|SINE|Alu	2295	NM_001145928	79595		NM_024545	ENSG00000136715	SAP130	-	Sin3A associated protein 130	protein-coding
115489	chr19	15375771	15376380	+	0	NA	intron (NM_005858, intron 2 of 13)	AluJb|SINE|Alu	3712	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
36915	chr11	10799321	10799600	+	0	NA	intron (NM_001172705, intron 19 of 21)	intron (NM_001172705, intron 19 of 21)	2148	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
22549	chr1	222474651	222474750	+	0	NA	Intergenic	Intergenic	73404	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
171909	chr4	831471	831630	+	0	NA	Intergenic	Intergenic	-5421	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
179041	chr4	165252001	165252230	+	0	NA	intron (NM_001161522, intron 3 of 13)	intron (NM_001161522, intron 3 of 13)	27908	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
127048	chr2	37230821	37232600	+	0	NA	promoter-TSS (NM_001350027)	promoter-TSS (NM_001350027)	52	NR_146404	55471		NM_018607	ENSG00000003509	NDUFAF7	C2orf56|MidA|PRO1853	NADH:ubiquinone oxidoreductase complex assembly factor 7	protein-coding
222850	chr8	142621801	142622800	+	0	NA	Intergenic	Intergenic	-7821	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
65737	chr14	53148451	53149250	+	0	NA	intron (NM_030637, intron 1 of 11)	MIR|SINE|MIR	4473	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
102316	chr17	75366971	75367700	+	0	NA	intron (NM_203506, intron 2 of 4)	AluJb|SINE|Alu	38343	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
90833	chr17	2304901	2305100	+	0	NA	intron (NM_001304803, intron 1 of 6)	intron (NM_001304803, intron 1 of 6)	1050	NM_021947	63826		NM_021947	ENSG00000167720	SRR	ILV1|ISO1	serine racemase	protein-coding
12	chr1	23371	23930	+	0	NA	intron (NR_024540, intron 2 of 10)	intron (NR_024540, intron 2 of 10)	5720	NR_024540	653635		NR_024540		WASH7P	FAM39F|WASH5P	WASP family homolog 7, pseudogene	pseudo
19139	chr1	171546271	171546430	+	0	NA	intron (NM_015172, intron 17 of 33)	intron (NM_015172, intron 17 of 33)	60820	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
112887	chr19	7624151	7624630	+	0	NA	exon (NM_020196, exon 7 of 19)	exon (NM_020196, exon 7 of 19)	5155	NM_020196	56949		NM_020196	ENSG00000076924	XAB2	HCNP|HCRN|NTC90|SYF1	XPA binding protein 2	protein-coding
6623	chr1	28891801	28892000	+	0	NA	intron (NM_001376022, intron 1 of 20)	AluSq|SINE|Alu	4800	NM_001376023	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
87991	chr16	80700601	80700900	+	0	NA	intron (NM_152342, intron 1 of 6)	L1ME3G|LINE|L1	103848	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
171659	chr3	197663771	197663930	+	0	NA	Intergenic	L1MEg|LINE|L1	10726	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
28381	chr10	47310321	47310580	+	0	NA	exon (NM_004962, exon 2 of 3)	exon (NM_004962, exon 2 of 3)	10253	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
41414	chr11	66048321	66048580	+	0	NA	intron (NM_033036, intron 1 of 2)	intron (NM_033036, intron 1 of 2)	711	NM_033036	89792		NM_033036	ENSG00000175229	GAL3ST3	GAL3ST-3|GAL3ST2	galactose-3-O-sulfotransferase 3	protein-coding
207105	chr7	40604871	40605030	+	0	NA	intron (NM_001193312, intron 11 of 12)	intron (NM_001193312, intron 11 of 12)	374989	NR_110831	101928744		NR_110831	ENSG00000232458	LINC01450	-	long intergenic non-protein coding RNA 1450	ncRNA
52202	chr12	54367021	54367480	+	0	NA	intron (NR_120487, intron 1 of 3)	L2a|LINE|L2	-2764	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
4784	chr1	23557451	23557630	+	0	NA	TTS (NM_002167)	TTS (NM_002167)	1961	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
183070	chr5	73564901	73566180	+	0	NA	promoter-TSS (NM_001284431)	promoter-TSS (NM_001284431)	99	NM_023039	57763		NM_023039	ENSG00000164331	ANKRA2	ANKRA	ankyrin repeat family A member 2	protein-coding
59884	chr13	30678971	30679130	+	0	NA	Intergenic	AluSx|SINE|Alu	-34428	NM_001204406	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
97735	chr17	44380451	44380930	+	0	NA	intron (NM_000419, intron 13 of 29)	intron (NM_000419, intron 13 of 29)	8959	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
12374	chr1	101255451	101256550	+	0	NA	Intergenic	AluY|SINE|Alu	18981	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
82329	chr16	15765921	15766350	+	0	NA	intron (NM_022844, intron 9 of 41).2	MER20|DNA|hAT-Charlie	90893	NM_001040113	4629		NM_002474	ENSG00000133392	MYH11	AAT4|FAA4|SMHC|SMMHC|SMMS-1|VSCM2	myosin heavy chain 11	protein-coding
194032	chr6	31836541	31837080	+	0	NA	promoter-TSS (NR_002742)	promoter-TSS (NR_002742)	-266	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
214215	chr7	148725451	148725750	+	0	NA	intron (NM_001370664, intron 1 of 21)	LTR16A|LTR|ERVL	25890	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
91149	chr17	3761201	3761780	+	0	NA	exon (NM_002208, exon 5 of 31)	exon (NM_002208, exon 5 of 31)	37587	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
95141	chr17	35058551	35058850	+	0	NA	intron (NR_037713, intron 1 of 6)	AluSg|SINE|Alu	5007	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
71246	chr14	105190851	105192430	+	0	NA	Intergenic	Intergenic	-10317	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
74271	chr15	57299851	57300030	+	0	NA	promoter-TSS (NR_024433)	promoter-TSS (NR_024433)	-425	NR_024433	283663		NR_024433	ENSG00000247982	LINC00926	-	long intergenic non-protein coding RNA 926	ncRNA
204803	chr7	5644301	5644500	+	0	NA	intron (NM_207111, intron 14 of 16)	L1MB5|LINE|L1	36061	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
198476	chr6	106196601	106196800	+	0	NA	intron (NR_104402, intron 5 of 5)	AluSz6|SINE|Alu	97759	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
229325	chr9	120895571	120895930	+	0	NA	promoter-TSS (NM_001286840)	promoter-TSS (NM_001286840)	-854	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
156363	chr22	41020301	41020500	+	0	NA	Intergenic	Intergenic	53321	NR_132979	106635682		NR_132979		SNORD140	-	small nucleolar RNA, C/D box 140	snoRNA
38073	chr11	35191001	35191630	+	0	NA	intron (NM_001202556, intron 5 of 7)	intron (NM_001202556, intron 5 of 7)	28365	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
178757	chr4	153246621	153246880	+	0	NA	intron (NM_001375516, intron 2 of 12)	intron (NM_001375516, intron 2 of 12)	-10609	NM_001302694	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
95848	chr17	38821051	38821350	+	0	NA	intron (NM_017748, intron 1 of 9)	intron (NM_017748, intron 1 of 9)	4121	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
87782	chr16	75430401	75430780	+	0	NA	intron (NM_006324, intron 1 of 6)	AluSx1|SINE|Alu	2913	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
218133	chr8	41593251	41593600	+	0	NA	intron (NM_001363197, intron 1 of 12)	HERVE_a-int|LTR|ERV1	14909	NM_001363197	137964		NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
130303	chr2	84924321	84925200	+	0	NA	Intergenic	MER51A|LTR|ERV1	19104	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
42616	chr11	72201571	72201730	+	0	NA	Intergenic	(TATACACG)n|Simple_repeat|Simple_repeat	9510	NM_016729	2348		NM_000802	ENSG00000110195	FOLR1	FBP|FOLR|FRalpha|NCFTD	folate receptor alpha	protein-coding
54480	chr12	92036971	92037400	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	104528	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
145667	chr20	44976621	44977080	+	0	NA	intron (NM_006282, intron 2 of 10)	MLT1L|LTR|ERVL-MaLR	10338	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
38286	chr11	43315601	43315930	+	0	NA	intron (NM_001142931, intron 1 of 12)	intron (NM_001142931, intron 1 of 12)	3769	NR_024625	8539		NM_006595	ENSG00000166181	API5	AAC-11|AAC11	apoptosis inhibitor 5	protein-coding
69929	chr14	99551501	99551900	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	52507	NM_001144995	317762		NM_022747	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
70469	chr14	102068851	102069150	+	0	NA	Intergenic	L1M4|LINE|L1	18044	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
132005	chr2	100594851	100595250	+	0	NA	Intergenic	Kanga1b|DNA|TcMar-Tc2	-8689	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
168359	chr3	141891971	141892480	+	0	NA	intron (NM_001679, intron 1 of 6)	L1MEd|LINE|L1	15582	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
169125	chr3	155857521	155857780	+	0	NA	Intergenic	AluSz|SINE|Alu	-3191	NM_001190992	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
202286	chr6	157146671	157148780	+	0	NA	intron (NM_001371656, intron 9 of 20)	(CCCT)n|Simple_repeat|Simple_repeat	111298	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
207564	chr7	44887321	44887800	+	0	NA	Intergenic	Intergenic	-2030	NM_033224	5814		NM_033224	ENSG00000146676	PURB	PURBETA	purine rich element binding protein B	protein-coding
210584	chr7	100368171	100368630	+	0	NA	TTS (NM_001371931)	TTS (NM_001371931)	-5087	NM_178273	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
33501	chr10	119135221	119135900	+	0	NA	intron (NM_207009, intron 8 of 8)	L1MB4|LINE|L1	30132	NR_110305	119559		NM_178867	ENSG00000183605	SFXN4	BCRM1|COXPD18|SLC56A4	sideroflexin 4	protein-coding
156069	chr22	40007871	40008330	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	13146	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
234163	chrX	11558971	11559200	+	0	NA	intron (NR_109776, intron 1 of 14)	intron (NR_109776, intron 1 of 14)	106835	NM_013427	395		NM_001174	ENSG00000047648	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
186239	chr5	134404701	134404900	+	0	NA	intron (NM_080656, intron 2 of 2)	AluSz6|SINE|Alu	7081	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
15115	chr1	148644801	148645380	+	0	NA	intron (NM_001364007, intron 1 of 4)	L2a|LINE|L2	34656	NM_001364007	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
29829	chr10	72325471	72325700	+	0	NA	Intergenic	Intergenic	29334	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
149204	chr21	25234951	25235080	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	196686	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
50553	chr12	48003221	48003580	+	0	NA	intron (NM_001844, intron 1 of 53)	intron (NM_001844, intron 1 of 53)	1076	NM_001844	1280		NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
237601	chrX	123964221	123964580	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	2694	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
164913	chr3	71141171	71141530	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	-9153	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
168053	chr3	136938351	136938850	+	0	NA	intron (NM_001190796, intron 1 of 2)	Tigger17a|DNA|TcMar-Tigger	8098	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
109401	chr19	673471	673930	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2692	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
228159	chr9	96940271	96940430	+	0	NA	TTS (NM_001170741)	TTS (NM_001170741)	11507	NM_001045477	441457		NM_001024597	ENSG00000188152	NUTM2G	FAM22G|NUTMG	NUT family member 2G	protein-coding
182921	chr5	70585221	70586400	+	0	NA	promoter-TSS (NR_034021)	promoter-TSS (NR_034021)	-8	NR_027386	653188		NR_027386	ENSG00000290560	GUSBP3	GUSBP1|SMA3	GUSB pseudogene 3	pseudo
92967	chr17	17108821	17109500	+	0	NA	intron (NM_015134, intron 3 of 22)	intron (NM_015134, intron 3 of 22)	66703	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
40515	chr11	64281121	64281730	+	0	NA	intron (NM_032989, intron 2 of 3)	L2a|LINE|L2	3240	NM_032989	572		NM_004322	ENSG00000002330	BAD	BBC2|BCL2L8	BCL2 associated agonist of cell death	protein-coding
35053	chr11	595451	595950	+	0	NA	intron (NM_001286582, intron 6 of 17)	intron (NM_001286582, intron 6 of 17)	19230	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
11082	chr1	85257501	85257900	+	0	NA	intron (NR_024113, intron 3 of 3)	intron (NR_024113, intron 3 of 3)	1962	NR_024113	148423		NM_198077	ENSG00000162642	C1orf52	gm117	chromosome 1 open reading frame 52	protein-coding
164282	chr3	57586651	57587430	+	0	NA	intron (NM_001660, intron 1 of 5)	AluSq2|SINE|Alu	10304	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
189360	chr5	172453971	172455080	+	0	NA	promoter-TSS (NM_001017995)	promoter-TSS (NM_001017995)	0	NM_001017995	285590		NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
110928	chr19	2788421	2788680	+	0	NA	intron (NM_003249, intron 1 of 12)	AluSq|SINE|Alu	3047	NM_003249	7064		NM_003249	ENSG00000172009	THOP1	EP24.15|MEPD_HUMAN|MP78|TOP	thimet oligopeptidase 1	protein-coding
147452	chr20	59002671	59003230	+	0	NA	intron (NM_001336, intron 2 of 5)	intron (NM_001336, intron 2 of 5)	4304	NM_001336	1522		NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
61320	chr13	50384771	50385000	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	142564	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
200007	chr6	128998571	128998880	+	0	NA	intron (NM_000426, intron 1 of 64)	L1HS|LINE|L1	115587	NM_001079823	3908		NM_000426	ENSG00000196569	LAMA2	LAMM|MDC1A	laminin subunit alpha 2	protein-coding
130009	chr2	74173051	74173530	+	0	NA	intron (NM_001317112, intron 1 of 4)	intron (NM_001317112, intron 1 of 4)	5024	NM_001317111	55233		NM_018221	ENSG00000114978	MOB1A	C2orf6|MABKL1B|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B	MOB kinase activator 1A	protein-coding
237951	chrX	132737651	132738030	+	0	NA	intron (NM_001077188, intron 3 of 5)	intron (NM_001077188, intron 3 of 5)	70198	NR_046691	100874102		NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
211786	chr7	107615971	107616250	+	0	NA	intron (NR_163940, intron 13 of 13)	LTR33A|LTR|ERVL	35864	NR_163927	55973		NM_018844	ENSG00000075790	BCAP29	B29|BAP29	B cell receptor associated protein 29	protein-coding
173950	chr4	25911651	25911750	+	0	NA	Intergenic	MIRb|SINE|MIR	-2492	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
193307	chr6	30099351	30100180	+	0	NA	Intergenic	MIRc|SINE|MIR	-5475	NR_126470	104533120		NR_126470	ENSG00000231226	TRIM31-AS1	-	TRIM31 antisense RNA 1	ncRNA
36727	chr11	9215321	9215580	+	0	NA	intron (NM_001243254, intron 1 of 22)	intron (NM_001243254, intron 1 of 22)	49876	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
230652	chr9	128698001	128698200	+	0	NA	Intergenic	AluSx|SINE|Alu	-4403	NM_013355	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
125276	chr2	10452151	10452650	+	0	NA	non-coding (NR_110597, exon 3 of 5)	non-coding (NR_110597, exon 3 of 5)	2672	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
227582	chr9	92350951	92351280	+	0	NA	intron (NM_001286969, intron 3 of 6)	L1MB3|LINE|L1	25162	NM_001012267	401541		NM_001012267	ENSG00000188312	CENPP	CENP-P	centromere protein P	protein-coding
114385	chr19	12552671	12552830	+	0	NA	Intergenic	Intergenic	-1268	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
49550	chr12	26785371	26785530	+	0	NA	intron (NM_002223, intron 2 of 56)	SVA_E|Retroposon|SVA	47744	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
136791	chr2	181477521	181478130	+	0	NA	intron (NM_000885, intron 4 of 27)	L1MA9|LINE|L1	20439	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
8881	chr1	43648101	43648700	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-1749	NM_014663	9682		NM_014663	ENSG00000066135	KDM4A	JHDM3A|JMJD2|JMJD2A|TDRD14A	lysine demethylase 4A	protein-coding
100204	chr17	59150821	59151330	+	0	NA	TTS (NR_029842)	TTS (NR_029842)	146	NR_029842	407027		NR_029842	ENSG00000207996	MIR301A	MIR301|MIRN301|MIRN301A|mir-301a	microRNA 301a	ncRNA
112506	chr19	6470201	6470600	+	0	NA	intron (NM_024898, intron 17 of 22)	MIR|SINE|MIR	6129	NM_174881	92359		NM_139161	ENSG00000130545	CRB3	-	crumbs cell polarity complex component 3	protein-coding
150400	chr21	42309421	42310630	+	0	NA	Intergenic	Intergenic	5384	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
7541	chr1	34924751	34925250	+	0	NA	intron (NM_001080418, intron 1 of 11)	intron (NM_001080418, intron 1 of 11)	4650	NM_001080418	58512		NM_001080418	ENSG00000116544	DLGAP3	DAP3|SAPAP3|SPAPA3	DLG associated protein 3	protein-coding
140401	chr2	233084291	233085600	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	24603	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
136460	chr2	177148471	177149170	+	0	NA	Intergenic	Intergenic	63591	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
173600	chr4	10589701	10590100	+	0	NA	intron (NM_052964, intron 3 of 18)	intron (NM_052964, intron 3 of 18)	94868	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
121935	chr19	48455751	48455850	+	0	NA	5' UTR (NM_013348, exon 1 of 3)	5' UTR (NM_013348, exon 1 of 3)	226	NM_013348	3770		NM_013348	ENSG00000182324	KCNJ14	IRK4|KIR2.4	potassium inwardly rectifying channel subfamily J member 14	protein-coding
230902	chr9	129237011	129238430	+	0	NA	Intergenic	Intergenic	-44696	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
75997	chr15	70722471	70722900	+	0	NA	intron (NM_018003, intron 1 of 18)	intron (NM_018003, intron 1 of 18)	-20403	NM_001008224	55075		NM_018003	ENSG00000137831	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
237865	chrX	130254001	130254200	+	0	NA	intron (NM_017666, intron 2 of 18)	L1PA13|LINE|L1	14799	NM_017666	55609		NM_017666	ENSG00000056277	ZNF280C	SUHW3|ZNF633|ZPET	zinc finger protein 280C	protein-coding
48502	chr12	9863951	9864250	+	0	NA	intron (NM_005127, intron 1 of 4)	L1M3f|LINE|L1	5759	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
218716	chr8	58652221	58652580	+	0	NA	intron (NM_003580, intron 1 of 30)	intron (NM_003580, intron 1 of 30)	7007	NM_001144772	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
89045	chr16	88434401	88434680	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-18740	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
201442	chr6	147322121	147322850	+	0	NA	intron (NM_139244, intron 16 of 25)	intron (NM_139244, intron 16 of 25)	-117871	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
124112	chr19	55660951	55661050	+	0	NA	intron (NM_007279, intron 4 of 11)	intron (NM_007279, intron 4 of 11)	5965	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
3522	chr1	16064371	16064730	+	0	NA	intron (NM_182623, intron 1 of 6)	L2|LINE|L2	9101	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
159084	chr3	12287701	12288350	+	0	NA	intron (NM_005037, intron 1 of 6)	CpG	141	NM_001374261	5468		NM_005037	ENSG00000132170	PPARG	CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARG5|PPARgamma	peroxisome proliferator activated receptor gamma	protein-coding
185611	chr5	131423021	131423330	+	0	NA	TTS (NM_001164386)	TTS (NM_001164386)	159122	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
84385	chr16	30307451	30307950	+	0	NA	intron (NR_002453, intron 1 of 12)	intron (NR_002453, intron 1 of 12)	27674	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
64807	chr14	34979401	34979600	+	0	NA	intron (NR_151701, intron 1 of 4)	intron (NR_151701, intron 1 of 4)	3066	NR_151701	100506157		NR_151701		SRP54-AS1	-	SRP54 antisense RNA 1	ncRNA
82099	chr16	14489401	14489730	+	0	NA	intron (NM_002582, intron 21 of 23)	intron (NM_002582, intron 21 of 23)	-119299	NR_131191	105447648		NR_131191	ENSG00000260009	LINC02130	-	long intergenic non-protein coding RNA 2130	ncRNA
80651	chr16	3001251	3001880	+	0	NA	TTS (NR_110947)	TTS (NR_110947)	2610	NR_110949	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
117706	chr19	28736851	28737230	+	0	NA	Intergenic	Intergenic	-9346	NR_110759	100420587		NR_110759	ENSG00000283403	LOC100420587	-	SHC binding and spindle associated 1 pseudogene	pseudo
202663	chr6	158781121	158781380	+	0	NA	intron (NM_003379, intron 6 of 12)	intron (NM_003379, intron 6 of 12)	-16497	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
134280	chr2	135796451	135796750	+	0	NA	intron (NM_002299, intron 13 of 16)	intron (NM_002299, intron 13 of 16)	-23591	NR_045486	100507600		NR_045486	ENSG00000226806	LCT-AS1	-	LCT antisense RNA 1	ncRNA
208781	chr7	73578201	73580030	+	0	NA	promoter-TSS (NM_001362662)	promoter-TSS (NM_001362662)	-536	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
222782	chr8	141987201	141987600	+	0	NA	Intergenic	Intergenic	-188939	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
144409	chr20	35285851	35286730	+	0	NA	TTS (NR_109815)	TTS (NR_109815)	1039	NR_109815	140846		NR_109815	ENSG00000235214	FAM83C-AS1	C20orf120|NCRNA00154|dJ614O4.3	FAM83C antisense RNA 1	ncRNA
38495	chr11	45872471	45873350	+	0	NA	intron (NM_021117, intron 11 of 11)	intron (NM_021117, intron 11 of 11)	-12741	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
38801	chr11	47272771	47273380	+	0	NA	promoter-TSS (NR_120569)	promoter-TSS (NR_120569)	-965	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
166575	chr3	117996821	117997080	+	0	NA	Intergenic	CpG	-306025	NR_146652	105374057		NR_146652	ENSG00000241213	LINC02024	-	long intergenic non-protein coding RNA 2024	ncRNA
193801	chr6	31431571	31431730	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-10017	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
40134	chr11	62836571	62837000	+	0	NA	intron (NR_161381, intron 3 of 10)	intron (NR_161381, intron 3 of 10)	2805	NM_001369450	54663		NM_018093	ENSG00000133316	WDR74	Nsa1	WD repeat domain 74	protein-coding
225224	chr9	34185101	34185780	+	0	NA	intron (NM_001171201, intron 1 of 5)	AluJo|SINE|Alu	6397	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
121502	chr19	47161151	47161830	+	0	NA	intron (NR_027280, intron 5 of 8)	intron (NR_027280, intron 5 of 8)	30655	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
211264	chr7	102684401	102685550	+	0	NA	intron (NR_146066, intron 9 of 11)	AluSx|SINE|Alu	-13240	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
230535	chr9	128369371	128369530	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluJr|SINE|Alu	-1869	NM_001135947	81605		NM_030914	ENSG00000167118	URM1	C9orf74	ubiquitin related modifier 1	protein-coding
198449	chr6	106115721	106115980	+	0	NA	Intergenic	AluSc|SINE|Alu	16909	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
68237	chr14	76960301	76960600	+	0	NA	intron (NR_133913, intron 1 of 2)	intron (NR_133913, intron 1 of 2)	812	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
38108	chr11	35225151	35225650	+	0	NA	intron (NM_001202555, intron 9 of 9)	intron (NM_001202555, intron 9 of 9)	62450	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
78033	chr15	90004271	90005030	+	0	NA	intron (NM_198526, intron 1 of 4)	MIRc|SINE|MIR	-2105	NR_036135	100422841		NR_036135	ENSG00000265871	MIR3174	-	microRNA 3174	ncRNA
94332	chr17	28834971	28835130	+	0	NA	intron (NM_018182, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	7740	NM_001288637	55731		NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding
201711	chr6	149717501	149719380	+	0	NA	promoter-TSS (NM_001350392)	promoter-TSS (NM_001350392)	-184	NM_001270519	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
189736	chr5	176553521	176554800	+	0	NA	intron (NM_017675, intron 1 of 31)	intron (NM_017675, intron 1 of 31)	4818	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
215095	chr7	155202721	155203380	+	0	NA	Intergenic	Intergenic	-94722	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
38460	chr11	45649701	45649900	+	0	NA	exon (NM_003654, exon 4 of 4)	exon (NM_003654, exon 4 of 4)	15822	NM_003654	8534		NM_003654	ENSG00000175264	CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate sulfotransferase 1	protein-coding
214493	chr7	150433301	150433750	+	0	NA	promoter-TSS (NR_034033)	promoter-TSS (NR_034033)	-129	NR_034033	285972		NR_034033	ENSG00000242258	LINC00996	-	long intergenic non-protein coding RNA 996	ncRNA
34231	chr10	130109451	130109900	+	0	NA	TTS (NR_044994)	TTS (NR_044994)	1142	NR_034125	387723		NM_001355042	ENSG00000237489	C10orf143	LINC00959	chromosome 10 open reading frame 143	protein-coding
15534	chr1	150530271	150530830	+	0	NA	Intergenic	Intergenic	14793	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
62639	chr13	101453651	101454000	+	0	NA	intron (NM_001271754, intron 1 of 10)	CpG	1150	NM_001271754	9358		NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
54266	chr12	88063401	88063630	+	0	NA	intron (NM_025114, intron 45 of 53)	L2a|LINE|L2	27979	NM_001009894	91298		NM_001009894	ENSG00000133641	RLIG1	C12orf29|Rnl	RNA 5'-phosphate and 3'-OH ligase 1	protein-coding
90180	chr17	336001	336600	+	0	NA	intron (NM_006987, intron 1 of 9).2	intron (NM_006987, intron 1 of 9).2	4781	NR_164141	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
216940	chr8	22911451	22911950	+	0	NA	intron (NM_001363233, intron 3 of 6)	intron (NM_001363233, intron 3 of 6)	16214	NM_144962	157310		NM_144962	ENSG00000134020	PEBP4	CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4	phosphatidylethanolamine binding protein 4	protein-coding
235568	chrX	47381201	47381400	+	0	NA	intron (NM_003446, intron 1 of 3)	MER50|LTR|ERV1	-7350	NR_003710	100124540		NR_003710	ENSG00000221459	SNORA11C	-	small nucleolar RNA, H/ACA box 11C	snoRNA
216696	chr8	22168421	22168880	+	0	NA	intron (NR_033404, intron 1 of 15)	intron (NR_033404, intron 1 of 15)	3278	NR_033403	649		NM_001199	ENSG00000168487	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
35786	chr11	2170601	2170800	+	0	NA	exon (NM_199293, exon 2 of 14)	exon (NM_199293, exon 2 of 14)	1115	NM_199293	7054		NM_000360	ENSG00000180176	TH	DYT14|DYT5b|TYH	tyrosine hydroxylase	protein-coding
105772	chr18	2798051	2798350	+	0	NA	intron (NM_015295, intron 47 of 47)	L2a|LINE|L2	-48806	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
229541	chr9	122897471	122897630	+	0	NA	5' UTR (NM_001354482, exon 2 of 20)	5' UTR (NM_001354482, exon 2 of 20)	7809	NM_001354486	54542		NM_018835	ENSG00000056586	RC3H2	MNAB|RNF164	ring finger and CCCH-type domains 2	protein-coding
134334	chr2	136110771	136111830	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	4935	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
156110	chr22	40088221	40088700	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSx1|SINE|Alu	43643	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
116190	chr19	17465971	17466930	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-4074	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
19906	chr1	184036321	184036590	+	0	NA	intron (NM_001303421, intron 1 of 11)	CpG	1273	NM_015101	23127		NM_015101	ENSG00000198756	COLGALT2	C1orf17|ColGalT 2|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
8351	chr1	40232071	40233000	+	0	NA	intron (NM_012421, intron 7 of 7)	MLT1E3|LTR|ERVL-MaLR	-15402	NM_001008740	127391		NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
51312	chr12	51316701	51317300	+	0	NA	intron (NM_001290007, intron 1 of 12)	AluSp|SINE|Alu	7174	NM_001290009	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
134001	chr2	130872751	130873050	+	0	NA	intron (NM_001375900, intron 1 of 12)	intron (NM_001375900, intron 1 of 12)	35986	NM_001375901	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
202764	chr6	159049801	159050000	+	0	NA	Intergenic	Intergenic	-4748	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
166462	chr3	114221301	114222250	+	0	NA	Intergenic	Intergenic	15803	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
131681	chr2	97718111	97719900	+	0	NA	intron (NM_001079, intron 2 of 13)	intron (NM_001079, intron 2 of 13)	5123	NM_001378594	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
212211	chr7	119586901	119587180	+	0	NA	Intergenic	L1PA2|LINE|L1	320335	NR_131962	105375475		NR_131960	ENSG00000225546	LINC02476	LVCAT5|lnc-TSPAN12	long intergenic non-protein coding RNA 2476	ncRNA
193665	chr6	30942601	30942800	+	0	NA	intron (NM_080870, intron 1 of 2)	intron (NM_080870, intron 1 of 2)	1727	NM_080870	135656		NM_080870	ENSG00000168631	MUCL3	C6orf37|DPCR1|PBLT	mucin like 3	protein-coding
43802	chr11	86467121	86467380	+	0	NA	intron (NR_147828, intron 7 of 14)	MIRc|SINE|MIR	92363	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
224960	chr9	33050571	33051130	+	0	NA	intron (NM_018225, intron 10 of 11)	AluY|SINE|Alu	25577	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
24336	chr1	239547921	239548630	+	0	NA	intron (NM_001375982, intron 3 of 6)	intron (NM_001375982, intron 3 of 6)	-80798	NM_000740	1131		NM_000740	ENSG00000133019	CHRM3	EGBRS|HM3|PBS|m3AChR	cholinergic receptor muscarinic 3	protein-coding
51588	chr12	52643521	52644250	+	0	NA	TTS (NM_000423)	TTS (NM_000423)	8326	NM_000423	3849		NM_000423	ENSG00000172867	KRT2	CK-2e|K2e|KRT2A|KRT2E|KRTE	keratin 2	protein-coding
125027	chr2	9585371	9585930	+	0	NA	intron (NM_006826, intron 5 of 5)	AluJr4|SINE|Alu	-29820	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
200834	chr6	138007001	138007200	+	0	NA	Intergenic	Intergenic	-61300	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
146111	chr20	48367901	48368100	+	0	NA	intron (NR_026958, intron 4 of 4)	intron (NR_026958, intron 4 of 4)	8089	NR_026958	284749		NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
138611	chr2	208395071	208395450	+	0	NA	intron (NR_163994, intron 1 of 14)	AluY|SINE|Alu	-11532	NM_005048	5746		NM_005048	ENSG00000144407	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
111067	chr19	3151651	3151950	+	0	NA	exon (NM_002068, exon 4 of 7)	exon (NM_002068, exon 4 of 7)	3375	NR_110670	100996351		NR_110670	ENSG00000267551	GNA15-DT	-	GNA15 divergent transcript	ncRNA
160156	chr3	20184821	20185600	+	0	NA	intron (NR_131180, intron 1 of 5)	intron (NR_131180, intron 1 of 5)	996	NM_001012412	151648		NM_138484	ENSG00000129810	SGO1	CAID|NY-BR-85|SGO|SGOL1	shugoshin 1	protein-coding
184925	chr5	112928721	112931050	+	0	NA	Intergenic	Intergenic	-7658	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
177082	chr4	108058601	108058800	+	0	NA	intron (NM_001130714, intron 9 of 9)	L2c|LINE|L2	54036	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
216668	chr8	22143501	22144480	+	0	NA	Intergenic	Intergenic	-2083	NM_001316965	80346		NM_025232	ENSG00000168476	REEP4	C8orf20|PP432|Yip2c	receptor accessory protein 4	protein-coding
235596	chrX	47619451	47620480	+	0	NA	promoter-TSS (NM_006950)	promoter-TSS (NM_006950)	-108	NM_133499	6853		NM_006950	ENSG00000008056	SYN1	EPILX|EPILX1|MRX50|SYN1a|SYN1b|SYNI	synapsin I	protein-coding
74751	chr15	63216401	63216900	+	0	NA	intron (NM_016530, intron 1 of 7)	AluSx4|SINE|Alu	27044	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
170250	chr3	184235551	184236250	+	0	NA	intron (NM_138345, intron 7 of 18)	intron (NM_138345, intron 7 of 18)	2484	NM_001320373	90113		NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
103904	chr17	79808701	79809180	+	0	NA	Intergenic	Intergenic	-11863	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
234310	chrX	13723121	13723380	+	0	NA	intron (NM_014563, intron 1 of 4)	AluSz|SINE|Alu	11370	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
66694	chr14	64196901	64197300	+	0	NA	intron (NM_015180, intron 99 of 114)	intron (NM_015180, intron 99 of 114)	-17044	NM_182913	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
157921	chr22	49779301	49779500	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	44931	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
147920	chr20	62908321	62908580	+	0	NA	intron (NM_001193369, intron 4 of 15)	MLT1E1A|LTR|ERVL-MaLR	18055	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
31618	chr10	97376001	97377500	+	0	NA	intron (NM_015179, intron 15 of 33)	MER20|DNA|hAT-Charlie	24590	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
189113	chr5	170348171	170348530	+	0	NA	Intergenic	L2a|LINE|L2	-5137	NM_001034838	30820		NM_014592	ENSG00000182132	KCNIP1	KCHIP1|VABP	potassium voltage-gated channel interacting protein 1	protein-coding
220356	chr8	99699601	99700830	+	0	NA	intron (NM_152564, intron 36 of 61)	intron (NM_152564, intron 36 of 61)	-163354	NR_030596	100126309		NR_030596	ENSG00000216069	MIR875	MIRN875|hsa-mir-875	microRNA 875	ncRNA
20007	chr1	185292451	185292800	+	0	NA	TTS (NM_001105518)	TTS (NM_001105518)	24618	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
233202	chr9	137217451	137217850	+	0	NA	3' UTR (NM_001144027, exon 13 of 13)	3' UTR (NM_001144027, exon 13 of 13)	3673	NM_031297	727800		NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
100810	chr17	64061221	64062150	+	0	NA	intron (NM_001433, intron 10 of 21)	intron (NM_001433, intron 10 of 21)	-41051	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
118364	chr19	35702151	35703280	+	0	NA	Intergenic	CpG	-1843	NM_001316902	27033		NM_014383	ENSG00000011590	ZBTB32	FAXF|FAZF|Rog|TZFP|ZNF538|mynn	zinc finger and BTB domain containing 32	protein-coding
23112	chr1	226681801	226682230	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-6947	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
86034	chr16	57540371	57540880	+	0	NA	Intergenic	L2c|LINE|L2	-2018	NM_153837	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
163830	chr3	52454721	52458280	+	0	NA	intron (NM_001276294, intron 1 of 13)	intron (NM_001276294, intron 1 of 13)	896	NM_001276294	11188		NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
125249	chr2	10410071	10410230	+	0	NA	intron (NM_134421, intron 3 of 5)	intron (NM_134421, intron 3 of 5)	36699	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
103654	chr17	78770351	78770650	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSc|SINE|Alu	11708	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
82127	chr16	14722701	14722900	+	0	NA	intron (NM_001277324, intron 4 of 7)	intron (NM_001277324, intron 4 of 7)	11111	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
91347	chr17	4496801	4497550	+	0	NA	Intergenic	Intergenic	-1706	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
210036	chr7	94394321	94395680	+	0	NA	5' UTR (NM_000089, exon 1 of 52)	5' UTR (NM_000089, exon 1 of 52)	105	NM_000089	1278		NM_000089	ENSG00000164692	COL1A2	EDSARTH2|EDSCV|OI4	collagen type I alpha 2 chain	protein-coding
83743	chr16	28644451	28644550	+	0	NA	intron (NM_001310136, intron 1 of 6)	(CCTCCC)n|Simple_repeat|Simple_repeat	6139	NM_001310136	728734		NM_001310136	ENSG00000255524	NPIPB8	-	nuclear pore complex interacting protein family member B8	protein-coding
81630	chr16	10878071	10878230	+	0	NA	promoter-TSS (NM_001379334)	promoter-TSS (NM_001379334)	-817	NM_001379334	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
159536	chr3	14466551	14466850	+	0	NA	intron (NR_103507, intron 7 of 13)	intron (NR_103507, intron 7 of 13)	64094	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
46441	chr11	128054351	128055150	+	0	NA	Intergenic	Intergenic	-154016	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
181090	chr5	36885771	36886130	+	0	NA	intron (NM_133433, intron 1 of 46)	intron (NM_133433, intron 1 of 46)	9181	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
3872	chr1	16979801	16980080	+	0	NA	intron (NM_001135247, intron 1 of 8)	intron (NM_001135247, intron 1 of 8)	680	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
86817	chr16	67865351	67865730	+	0	NA	intron (NM_005796, intron 2 of 4)	intron (NM_005796, intron 2 of 4)	-7512	NM_014329	23644		NM_014329	ENSG00000038358	EDC4	GE1|Ge-1|HEDL5|HEDLS|RCD-8|RCD8	enhancer of mRNA decapping 4	protein-coding
159811	chr3	16345201	16345930	+	0	NA	intron (NM_015150, intron 7 of 9)	MLT2B1|LTR|ERVL	80353	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
119891	chr19	41547701	41548130	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-1603	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
173422	chr4	8199951	8200100	+	0	NA	intron (NM_001318480, intron 1 of 17)	intron (NM_001318480, intron 1 of 17)	735	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
61065	chr13	48302871	48304680	+	0	NA	promoter-TSS (NR_046414)	promoter-TSS (NR_046414)	24	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
145305	chr20	41051371	41052000	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	22863	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
102537	chr17	75825521	75826130	+	0	NA	TTS (NM_001080419)	TTS (NM_001080419)	18579	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
232539	chr9	136340971	136341450	+	0	NA	3' UTR (NM_015597, exon 9 of 9)	3' UTR (NM_015597, exon 9 of 9)	-11847	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
224648	chr9	20640201	20640970	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-17724	NM_017794	54914		NM_017794	ENSG00000188352	FOCAD	KIAA1797|SCOLIV	focadhesin	protein-coding
108115	chr18	62245621	62245880	+	0	NA	intron (NR_144408, intron 14 of 32)	intron (NR_144408, intron 14 of 32)	58495	NR_144403	57614		NM_020854	ENSG00000134444	RELCH	HsT3308|HsT885|KIAA1468	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	protein-coding
19337	chr1	173768601	173769400	+	0	NA	intron (NM_014458, intron 8 of 11)	HAL1M8|LINE|L1	54019	NM_014458	27252		NM_014458	ENSG00000076321	KLHL20	KHLHX|KLEIP|KLHLX	kelch like family member 20	protein-coding
29560	chr10	71434321	71434780	+	0	NA	intron (NM_001171931, intron 1 of 24)	intron (NM_001171931, intron 1 of 24)	37616	NM_001171932	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
24907	chr10	1053251	1053750	+	0	NA	intron (NM_001317955, intron 2 of 5)	Tigger1|DNA|TcMar-Tigger	-2885	NM_014023	22884		NM_014023	ENSG00000047056	WDR37	NOCGUS	WD repeat domain 37	protein-coding
33429	chr10	118754071	118756000	+	0	NA	promoter-TSS (NM_153810)	promoter-TSS (NM_153810)	-65	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
180388	chr5	8665421	8665500	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-174272	NR_109932	101929284		NR_109932		LINC02199	-	long intergenic non-protein coding RNA 2199	ncRNA
93116	chr17	17692171	17692430	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	10842	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
150622	chr21	43380671	43381030	+	0	NA	Intergenic	Intergenic	-18501	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
103753	chr17	78922271	78922430	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	3037	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
149810	chr21	34995451	34995750	+	0	NA	intron (NM_001754, intron 2 of 8)	AluJb|SINE|Alu	43826	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
101185	chr17	65213471	65213630	+	0	NA	TTS (NM_001165933)	TTS (NM_001165933)	76180	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
37407	chr11	17244801	17245280	+	0	NA	Intergenic	Intergenic	-31674	NM_001352666	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
104233	chr17	80700451	80700750	+	0	NA	intron (NM_020761, intron 3 of 33)	(GGT)n|Simple_repeat|Simple_repeat	105032	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
61090	chr13	48410151	48410650	+	0	NA	TTS (NM_005767)	TTS (NM_005767)	2713	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
112381	chr19	6062151	6062980	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	47935	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
186167	chr5	134189921	134190930	+	0	NA	Intergenic	AluSg7|SINE|Alu	-13392	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
113228	chr19	8478771	8479300	+	0	NA	intron (NM_031203, intron 13 of 16)	intron (NM_031203, intron 13 of 16)	23605	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
73219	chr15	41603771	41604530	+	0	NA	Intergenic	Intergenic	44178	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
29595	chr10	71739821	71740350	+	0	NA	intron (NM_022124, intron 34 of 67)	MIRc|SINE|MIR	-2235	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
59843	chr13	30461451	30462530	+	0	NA	intron (NM_001370339, intron 4 of 4)	intron (NM_001370339, intron 4 of 4)	2337	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
155961	chr22	39773871	39774350	+	0	NA	intron (NM_152512, intron 5 of 6)	intron (NM_152512, intron 5 of 6)	119650	NM_152512	150350		NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
213616	chr7	139482751	139483200	+	0	NA	exon (NM_198508, exon 1 of 5)	exon (NM_198508, exon 1 of 5)	698	NM_198508	346689		NM_198508	ENSG00000188883	KLRG2	CLEC15B	killer cell lectin like receptor G2	protein-coding
4805	chr1	23594771	23595130	+	0	NA	Intergenic	Intergenic	-32384	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
26067	chr10	12810001	12810300	+	0	NA	intron (NM_153498, intron 6 of 10)	AluJb|SINE|Alu	-84797	NR_031752	100313841		NR_031752	ENSG00000221331	MIR548Q	-	microRNA 548q	ncRNA
235792	chrX	49168801	49169580	+	0	NA	Intergenic	L2a|LINE|L2	-2708	NM_002668	5355		NM_002668	ENSG00000102007	PLP2	A4|A4LSB	proteolipid protein 2	protein-coding
178700	chr4	152556151	152556950	+	0	NA	Intergenic	L1ME1|LINE|L1	20122	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
99760	chr17	50978721	50979180	+	0	NA	intron (NM_001130527, intron 26 of 29)	L2b|LINE|L2	67928	NM_001251971	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
113110	chr19	8296301	8296500	+	0	NA	Intergenic	AluSx3|SINE|Alu	11958	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
153190	chr22	23846321	23846580	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-7444	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
55612	chr12	106953751	106953850	+	0	NA	Intergenic	AluJb|SINE|Alu	-1922	NM_001319666	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
128860	chr2	63984351	63984800	+	0	NA	intron (NM_016516, intron 1 of 22)	intron (NM_016516, intron 1 of 22)	34853	NM_016516	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
163054	chr3	49927871	49928630	+	0	NA	intron (NM_032355, intron 1 of 5)	intron (NM_032355, intron 1 of 5)	1762	NM_032355	84315		NM_032355	ENSG00000164077	MON1A	SAND1	MON1 homolog A, secretory trafficking associated	protein-coding
13663	chr1	116558701	116559100	+	0	NA	intron (NR_026665, intron 1 of 5)	L2a|LINE|L2	1211	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
14813	chr1	146282151	146282580	+	0	NA	Intergenic	L1MC1|LINE|L1	-15408	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
152758	chr22	21754521	21754780	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-18856	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
81727	chr16	11299001	11299400	+	0	NA	Intergenic	Intergenic	7327	NR_031678	100313773		NR_031678	ENSG00000221801	MIR548H2	MIR548H-2|MIRN548H2	microRNA 548h-2	ncRNA
93323	chr17	18186471	18186630	+	0	NA	intron (NM_017758, intron 1 of 3)	intron (NM_017758, intron 1 of 3)	2722	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
99795	chr17	51259201	51262430	+	0	NA	promoter-TSS (NM_017643)	promoter-TSS (NM_017643)	269	NM_016001	51096		NM_016001	ENSG00000011260	UTP18	CGI-48|WDR50	UTP18 small subunit processome component	protein-coding
151624	chr22	15220141	15220250	+	0	NA	Intergenic	L1HS|LINE|L1	-307964	NM_001005239	81061		NM_001005239	ENSG00000130538	OR11H1	OR11H12|OR22-1	olfactory receptor family 11 subfamily H member 1	protein-coding
143191	chr20	24817821	24817950	+	0	NA	Intergenic	Intergenic	-131384	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
93475	chr17	18857671	18858730	+	0	NA	promoter-TSS (NM_001353100)	promoter-TSS (NM_001353100)	69	NM_001353107	5636		NM_002767	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase associated protein 2	protein-coding
167803	chr3	133546251	133546350	+	0	NA	Intergenic	Intergenic	-27386	NM_001134422	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
27114	chr10	27740821	27741500	+	0	NA	intron (NM_173576, intron 3 of 6)	intron (NM_173576, intron 3 of 6)	-3455	NR_121652	101929202		NR_121652		MKX-AS1	-	MKX antisense RNA 1	ncRNA
119346	chr19	39976301	39977450	+	0	NA	intron (NM_006503, intron 6 of 10)	AluSx|SINE|Alu	5710	NM_006503	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
145960	chr20	46230801	46231000	+	0	NA	intron (NM_021248, intron 3 of 11)	MIRb|SINE|MIR	77598	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
71074	chr14	104844971	104845130	+	0	NA	Intergenic	Intergenic	-20218	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
125138	chr2	9949471	9949830	+	0	NA	Intergenic	Intergenic	-2043	NM_198182	29841		NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
17199	chr1	156249421	156249850	+	0	NA	3' UTR (NM_001323615, exon 21 of 21)	3' UTR (NM_001323615, exon 21 of 21)	-1518	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
45206	chr11	117821851	117822500	+	0	NA	intron (NM_001243598, intron 7 of 9)	intron (NM_001243598, intron 7 of 9)	2569	NM_001680	486		NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
144224	chr20	34375121	34375380	+	0	NA	intron (NM_031483, intron 2 of 24)	AluSp|SINE|Alu	11977	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
107312	chr18	44909371	44909530	+	0	NA	intron (NM_001379141, intron 3 of 5)	intron (NM_001379141, intron 3 of 5)	60716	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
171898	chr4	800101	800300	+	0	NA	intron (NM_006651, intron 2 of 3)	MER21A|LTR|ERVL	-18352	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
80359	chr16	2513011	2515700	+	0	NA	intron (NM_001198569, intron 2 of 3)	CpG	403	NM_001694	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
159732	chr3	15804301	15805050	+	0	NA	intron (NM_015199, intron 1 of 27)	intron (NM_015199, intron 1 of 27)	-6491	NR_146111	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
89931	chr16	89730251	89731080	+	0	NA	intron (NR_110122, intron 6 of 10)	intron (NR_110122, intron 6 of 10)	9128	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
40840	chr11	65024701	65024900	+	0	NA	intron (NR_037650, intron 3 of 10)	intron (NR_037650, intron 3 of 10)	-2639	NM_013306	29907		NM_013306	ENSG00000110025	SNX15	HSAF001435	sorting nexin 15	protein-coding
48223	chr12	8198071	8198430	+	0	NA	intron (NR_026788, intron 7 of 7)	L1PBa|LINE|L1	18041	NR_026788	440078		NR_026788	ENSG00000226711	FAM66C	-	family with sequence similarity 66 member C	ncRNA
133442	chr2	119431621	119432130	+	0	NA	promoter-TSS (NM_183240)	promoter-TSS (NM_183240)	21	NM_183240	140738		NM_183240	ENSG00000171227	TMEM37	PR|PR1	transmembrane protein 37	protein-coding
155855	chr22	39462571	39462730	+	0	NA	intron (NM_002409, intron 1 of 1)	intron (NM_002409, intron 1 of 1)	5638	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
76670	chr15	75696951	75697450	+	0	NA	intron (NM_001897, intron 1 of 9)	intron (NM_001897, intron 1 of 9)	15648	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
63158	chr13	113634171	113634930	+	0	NA	exon (NM_007111, exon 8 of 12)	exon (NM_007111, exon 8 of 12)	23648	NM_000705	496		NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting subunit beta	protein-coding
164105	chr3	56668171	56668330	+	0	NA	intron (NM_001365638, intron 6 of 22)	intron (NM_001365638, intron 6 of 22)	-4204	NM_015224	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
225409	chr9	35054571	35055780	+	0	NA	TTS (NM_007126)	TTS (NM_007126)	12935	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
120165	chr19	42245971	42246130	+	0	NA	Intergenic	Intergenic	-3448	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
63851	chr14	21527171	21527330	+	0	NA	promoter-TSS (NM_001364564)	promoter-TSS (NM_001364564)	-904	NM_001291447	6297		NM_005407	ENSG00000165821	SALL2	COLB|HSAL2|Sal-2|ZNF795|p150(Sal2)	spalt like transcription factor 2	protein-coding
62331	chr13	99071001	99071400	+	0	NA	intron (NM_001318849, intron 1 of 54)	AluJb|SINE|Alu	15494	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
151723	chr22	17754251	17754750	+	0	NA	intron (NM_001244567, intron 1 of 5)	intron (NM_001244567, intron 1 of 5)	9759	NR_036168	100423025		NR_036168	ENSG00000264757	MIR3198-1	MIR3198|mir-3198-1	microRNA 3198-1	ncRNA
191309	chr6	6712921	6713180	+	0	NA	Intergenic	Intergenic	-90224	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
5697	chr1	26370421	26371150	+	0	NA	intron (NM_001114759, intron 1 of 5)	intron (NM_001114759, intron 1 of 5)	1965	NM_001114759	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
104421	chr17	81067401	81067600	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	9766	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
222807	chr8	142452701	142455250	+	0	NA	intron (NM_001702, intron 1 of 30)	L2|LINE|L2	4326	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
195018	chr6	35466421	35466680	+	0	NA	3' UTR (NM_021922, exon 10 of 10)	3' UTR (NM_021922, exon 10 of 10)	-1851	NM_007104	4736		NM_007104	ENSG00000198755	RPL10A	CSA19|Csa-19|L10A|NEDD6|uL1	ribosomal protein L10a	protein-coding
85330	chr16	50081601	50082000	+	0	NA	intron (NR_138092, intron 8 of 15)	intron (NR_138092, intron 8 of 15)	15830	NM_182922	55027		NM_017939	ENSG00000155393	HEATR3	DBA21|SYO1	HEAT repeat containing 3	protein-coding
180626	chr5	16629051	16630100	+	0	NA	non-coding (NR_109946, exon 4 of 4)	non-coding (NR_109946, exon 4 of 4)	-12517	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
224305	chr9	6568071	6568500	+	0	NA	intron (NM_000170, intron 15 of 24)	intron (NM_000170, intron 15 of 24)	77444	NM_000170	2731		NM_000170	ENSG00000178445	GLDC	GCE|GCE1|GCSP|HYGN1	glycine decarboxylase	protein-coding
209823	chr7	88216201	88216600	+	0	NA	promoter-TSS (NR_120517)	promoter-TSS (NR_120517)	-260	NR_120517	102723885		NR_120517		SRI-AS1	-	SRI antisense RNA 1	ncRNA
117502	chr19	19930321	19930600	+	0	NA	intron (NM_031218, intron 3 of 3)	LTR13|LTR|ERVK	29514	NM_031218	81931		NM_031218	ENSG00000184635	ZNF93	HPF34|HTF34|TF34|ZNF505	zinc finger protein 93	protein-coding
227264	chr9	89365271	89366000	+	0	NA	intron (NR_163887, intron 13 of 15)	intron (NR_163887, intron 13 of 15)	46784	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
222586	chr8	140794701	140795100	+	0	NA	intron (NR_148036, intron 12 of 34)	L2a|LINE|L2	-62247	NR_029892	442893		NR_029892	ENSG00000254324	MIR151A	MIR151|MIRN151|hsa-mir-151|hsa-mir-151a	microRNA 151a	ncRNA
173657	chr4	13615251	13615550	+	0	NA	exon (NM_148894, exon 3 of 26)	exon (NM_148894, exon 3 of 26)	12325	NM_148894	259282		NM_148894	ENSG00000038219	BOD1L1	BOD1L|FAM44A	biorientation of chromosomes in cell division 1 like 1	protein-coding
63396	chr13	114069771	114070230	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	7955	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171866	chr4	747271	747580	+	0	NA	intron (NM_001317836, intron 9 of 11)	CpG	34423	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
145648	chr20	44897621	44897880	+	0	NA	intron (NM_003404, intron 2 of 6)	intron (NM_003404, intron 2 of 6)	12045	NM_003404	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
23951	chr1	235130201	235131550	+	0	NA	TTS (NR_027762)	TTS (NR_027762)	-2038	NM_014765	9804		NM_014765	ENSG00000173726	TOMM20	MAS20|MOM19|TOM20	translocase of outer mitochondrial membrane 20	protein-coding
121706	chr19	47596121	47596780	+	0	NA	Intergenic	AluSg7|SINE|Alu	-11746	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
52523	chr12	56099071	56099230	+	0	NA	intron (NM_001982, intron 23 of 27)	AluSq2|SINE|Alu	-5409	NM_006191	5036		NM_006191	ENSG00000170515	PA2G4	EBP1|HG4-1|ITAF45|p38-2G4	proliferation-associated 2G4	protein-coding
96488	chr17	40285621	40286080	+	0	NA	Intergenic	AluY|SINE|Alu	-2029	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
181523	chr5	43044171	43044630	+	0	NA	intron (NR_015447, intron 1 of 1)	intron (NR_015447, intron 1 of 1)	-1153	NM_001382352	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
122169	chr19	48897251	48897800	+	0	NA	intron (NM_003323, intron 2 of 12)	intron (NM_003323, intron 2 of 12)	1219	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
12864	chr1	110116421	110116780	+	0	NA	Intergenic	Intergenic	4157	NM_203412	164153		NM_203412	ENSG00000186150	UBL4B	-	ubiquitin like 4B	protein-coding
191003	chr6	3068141	3070100	+	0	NA	intron (NM_001354934, intron 1 of 11)	CpG	626	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
173907	chr4	25194771	25195000	+	0	NA	intron (NR_037934, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	34213	NR_037934	285540		NR_037934		SEPSECS-AS1	-	SEPSECS antisense RNA 1 (head to head)	ncRNA
193350	chr6	30238421	30238780	+	0	NA	intron (NR_052012, intron 3 of 4)	intron (NR_052012, intron 3 of 4)	-20962	NR_027822	3139		NR_027822	ENSG00000291097	HLA-L	HLA-92|HLA92|HLAL	major histocompatibility complex, class I, L (pseudogene)	pseudo
189532	chr5	173887601	173888900	+	0	NA	promoter-TSS (NM_001308191)	promoter-TSS (NM_001308191)	-99	NM_001308189	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
194683	chr6	33680101	33680580	+	0	NA	exon (NM_002224, exon 32 of 58)	exon (NM_002224, exon 32 of 58)	-17788	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
67645	chr14	73067571	73068980	+	0	NA	intron (NM_021239, intron 1 of 18)	intron (NM_021239, intron 1 of 18)	9741	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
201832	chr6	150068101	150069850	+	0	NA	intron (NM_024518, intron 1 of 4)	CpG	146	NM_024518	79465		NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
97078	chr17	42387701	42389630	+	0	NA	promoter-TSS (NM_001384992)	promoter-TSS (NM_001384992)	-223	NM_001384989	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
54982	chr12	96329321	96330000	+	0	NA	intron (NM_002595, intron 2 of 16)	intron (NM_002595, intron 2 of 16)	70779	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
150457	chr21	42499521	42500030	+	0	NA	intron (NM_018964, intron 1 of 20)	intron (NM_018964, intron 1 of 20)	153	NM_018964	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
76521	chr15	75045371	75045930	+	0	NA	intron (NR_125369, intron 3 of 4)	intron (NR_125369, intron 3 of 4)	2364	NM_001301105	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
156228	chr22	40370051	40371450	+	0	NA	intron (NM_001350047, intron 1 of 20)	CpG	156	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
72382	chr15	31371571	31372150	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	45025	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
105576	chr18	108851	111020	+	0	NA	intron (NR_033770, intron 1 of 4)	BSR/Beta|Satellite|Satellite	870	NR_033770	727758		NR_033770	ENSG00000290877	ROCK1P1	ROCK1P	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
196486	chr6	43626101	43626500	+	0	NA	exon (NM_001286216, exon 3 of 12)	exon (NM_001286216, exon 3 of 12)	1053	NM_001286216	54676		NM_019096	ENSG00000172432	GTPBP2	JABELS	GTP binding protein 2	protein-coding
207913	chr7	50628651	50628760	+	0	NA	intron (NM_001371008, intron 4 of 15)	intron (NM_001371008, intron 4 of 15)	-63300	NM_001082971	1644		NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
182558	chr5	65895751	65895850	+	0	NA	Intergenic	AluYc|SINE|Alu	-30754	NM_001006600	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
200050	chr6	129852371	129852530	+	0	NA	intron (NM_001010876, intron 1 of 4)	intron (NM_001010876, intron 1 of 4)	8865	NM_001010876	253582		NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
120504	chr19	44796671	44797050	+	0	NA	intron (NM_012116, intron 9 of 10)	intron (NM_012116, intron 9 of 10)	-12199	NM_001013257	4059		NM_005581	ENSG00000187244	BCAM	AU|B-CAM|CD239|F8/G253|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
213134	chr7	131368201	131368400	+	0	NA	intron (NM_001321316, intron 1 of 17)	intron (NM_001321316, intron 1 of 17)	40424	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
110551	chr19	2102021	2102450	+	0	NA	exon (NM_003938, exon 30 of 30)	exon (NM_003938, exon 30 of 30)	5320	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
207282	chr7	43988951	43989450	+	0	NA	intron (NR_003655, intron 4 of 15)	intron (NR_003655, intron 4 of 15)	-8668	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
237528	chrX	120308751	120308850	+	0	NA	intron (NM_001104544, intron 1 of 8)	intron (NM_001104544, intron 1 of 8)	2661	NM_001104544	55026		NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
11553	chr1	91036051	91036150	+	0	NA	Intergenic	AluYc|SINE|Alu	-13845	NM_032186	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
35582	chr11	1701021	1701550	+	0	NA	Intergenic	L1MEd|LINE|L1	4090	NM_001012416	440023		NM_001012416	ENSG00000205864	KRTAP5-6	KRTAP5.6	keratin associated protein 5-6	protein-coding
210262	chr7	99401571	99401730	+	0	NA	intron (NM_014891, intron 3 of 5)	L2c|LINE|L2	6947	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
81915	chr16	11738571	11738800	+	0	NA	intron (NR_136674, intron 1 of 8)	intron (NR_136674, intron 1 of 8)	4172	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
172534	chr4	2353901	2354750	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	10489	NM_001172660	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
35318	chr11	1033221	1033480	+	0	NA	intron (NM_005961, intron 1 of 32)	CpG	3368	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
4507	chr1	21743451	21743750	+	0	NA	intron (NM_001350166, intron 8 of 26)	L1ME3B|LINE|L1	39549	NM_001350164	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
164564	chr3	63996921	63997180	+	0	NA	intron (NM_001377405, intron 12 of 12)	AluSz|SINE|Alu	-6972	NR_038286	100507062		NR_038286	ENSG00000239653	PSMD6-AS2	-	PSMD6 antisense RNA 2	ncRNA
13009	chr1	111187321	111187780	+	0	NA	3' UTR (NM_024901, exon 12 of 12)	3' UTR (NM_024901, exon 12 of 12)	13096	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
137984	chr2	201223901	201224100	+	0	NA	intron (NM_001206542, intron 7 of 7)	AluY|SINE|Alu	-9443	NM_001228	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
127067	chr2	37395901	37396330	+	0	NA	Intergenic	Intergenic	51485	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
9942	chr1	54547071	54547300	+	0	NA	Intergenic	Intergenic	-1043	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
77729	chr15	85711671	85712130	+	0	NA	intron (NM_007200, intron 19 of 36)	AluJr|SINE|Alu	46825	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
142456	chr20	4016751	4017430	+	0	NA	Intergenic	Intergenic	-1532	NM_001134337	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
50082	chr12	44832301	44832700	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	43161	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
194784	chr6	34181501	34182030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26143	NM_001256809	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
72518	chr15	34100451	34100750	+	0	NA	intron (NM_020154, intron 1 of 4)	intron (NM_020154, intron 1 of 4)	1262	NM_020154	56851		NM_020154	ENSG00000134153	EMC7	C11orf3|C15orf24|HT022|ORF1-FL1	ER membrane protein complex subunit 7	protein-coding
54791	chr12	94262051	94263780	+	0	NA	intron (NR_037687, intron 1 of 11)	MIRb|SINE|MIR	296	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
17027	chr1	156064771	156064930	+	0	NA	intron (NR_133653, intron 1 of 3)	MIR3|SINE|MIR	3690	NR_133653	57111		NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
73707	chr15	45120201	45120800	+	0	NA	intron (NM_144565, intron 7 of 10)	intron (NM_144565, intron 7 of 10)	2543	NM_001276265	90527		NM_144565	ENSG00000140254	DUOXA1	NIP|NUMBIP|mol	dual oxidase maturation factor 1	protein-coding
47804	chr12	6579121	6579380	+	0	NA	intron (NM_001273, intron 33 of 39)	AluSx1|SINE|Alu	2359	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
95647	chr17	37980751	37980850	+	0	NA	intron (NM_001369501, intron 9 of 11).6	intron (NM_001369501, intron 9 of 11).6	8248	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
108653	chr18	76709651	76710100	+	0	NA	Intergenic	Intergenic	19846	NR_122073	400661		NR_122073	ENSG00000276397	LINC01879	-	long intergenic non-protein coding RNA 1879	ncRNA
232728	chr9	136619671	136620300	+	0	NA	Intergenic	Intergenic	-2804	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
186148	chr5	134168621	134169180	+	0	NA	intron (NM_170679, intron 2 of 5)	L2|LINE|L2	8050	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
82621	chr16	18925021	18926000	+	0	NA	intron (NM_015092, intron 1 of 62)	intron (NM_015092, intron 1 of 62)	898	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
23248	chr1	227795421	227795680	+	0	NA	Intergenic	Intergenic	7030	NR_168384	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
231654	chr9	131655351	131655700	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-4122	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
2806	chr1	10964821	10965130	+	0	NA	intron (NM_001366227, intron 2 of 10)	MIRc|SINE|MIR	1712	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
46057	chr11	122726221	122726480	+	0	NA	intron (NM_032873, intron 1 of 13)	AluSx1|SINE|Alu	70628	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
45188	chr11	117326771	117326930	+	0	NA	intron (NM_001271933, intron 1 of 31)	intron (NM_001271933, intron 1 of 31)	-1004	NM_014956	22897		NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
229416	chr9	121272071	121272230	+	0	NA	intron (NM_001353064, intron 2 of 19)	intron (NM_001353064, intron 2 of 19)	2225	NM_001353062	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
187758	chr5	144189401	144190530	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	-15426	NM_001370487	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
61579	chr13	72726621	72728380	+	0	NA	promoter-TSS (NM_001286747)	promoter-TSS (NM_001286747)	129	NM_001071775	440145		NM_001071775	ENSG00000204899	MZT1	C13orf37|MOZART1	mitotic spindle organizing protein 1	protein-coding
10312	chr1	64876921	64878080	+	0	NA	intron (NM_001321857, intron 4 of 24)	intron (NM_001321857, intron 4 of 24)	89049	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
65571	chr14	51970071	51970230	+	0	NA	TTS (NM_001243774)	TTS (NM_001243774)	-19396	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
205524	chr7	18508501	18508700	+	0	NA	promoter-TSS (NM_001204148)	promoter-TSS (NM_001204148)	-670	NM_001204148	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
101202	chr17	65523171	65524400	+	0	NA	Intergenic	Intergenic	37863	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
113363	chr19	8740871	8741230	+	0	NA	Intergenic	AluY|SINE|Alu	10096	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
197219	chr6	63687851	63688350	+	0	NA	intron (NM_001370348, intron 4 of 15)	AluY|SINE|Alu	41574	NM_015153	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
224667	chr9	21081721	21082180	+	0	NA	Intergenic	Intergenic	-4008	NM_002176	3456		NM_002176	ENSG00000171855	IFNB1	IFB|IFF|IFN-beta|IFNB	interferon beta 1	protein-coding
108903	chr18	79428321	79428850	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	28286	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
105988	chr18	5970171	5970330	+	0	NA	intron (NR_158609, intron 15 of 17)	intron (NR_158609, intron 15 of 17)	-74296	NM_001080209	645369		NM_001080209	ENSG00000206432	TMEM200C	TTMA	transmembrane protein 200C	protein-coding
10588	chr1	67408821	67409300	+	0	NA	3' UTR (NM_001018068, exon 8 of 8)	3' UTR (NM_001018068, exon 8 of 8)	21342	NM_001018067	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
194266	chr6	32595051	32596030	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-5704	NM_001243965	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
231904	chr9	133087871	133088430	+	0	NA	Intergenic	MIRb|SINE|MIR	5611	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
36630	chr11	7526671	7527800	+	0	NA	intron (NM_001351855, intron 1 of 24)	intron (NM_001351855, intron 1 of 24)	13236	NM_001351856	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
200444	chr6	135048201	135048400	+	0	NA	intron (NM_006620, intron 2 of 17)	LTR50|LTR|ERVL	6522	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
177734	chr4	122450901	122451100	+	0	NA	TTS (NM_000586)	TTS (NM_000586)	5725	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
41889	chr11	67252751	67253280	+	0	NA	intron (NM_012308, intron 18 of 20)	intron (NM_012308, intron 18 of 20)	13001	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
114559	chr19	12893001	12893200	+	0	NA	intron (NR_102316, intron 5 of 11)	AluSx|SINE|Alu	1940	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
31817	chr10	99329251	99329880	+	0	NA	exon (NM_020348, exon 1 of 11)	exon (NM_020348, exon 1 of 11)	209	NM_020348	26507		NM_020348	ENSG00000119946	CNNM1	ACDP1|CLP-1	cyclin and CBS domain divalent metal cation transport mediator 1	protein-coding
45881	chr11	119743901	119744230	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	14482	NR_120587	102724301		NR_120587	ENSG00000254854	NECTIN1-DT	-	NECTIN1 divergent transcript	ncRNA
31034	chr10	88886301	88886900	+	0	NA	intron (NM_020799, intron 1 of 10)	intron (NM_020799, intron 1 of 10)	6355	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
211582	chr7	105742001	105742200	+	0	NA	intron (NM_001385596, intron 3 of 11)	intron (NM_001385596, intron 3 of 11)	-62938	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
59419	chr13	25304501	25304700	+	0	NA	intron (NM_001008564, intron 1 of 14)	AluSq2|SINE|Alu	2975	NM_001008564	9818		NM_014089	ENSG00000139496	NUP58	NUP45|NUPL1|PRO2463	nucleoporin 58	protein-coding
233185	chr9	137197421	137197680	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	3191	NM_001128228	286262		NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79	taperin	protein-coding
18305	chr1	161163851	161164450	+	0	NA	intron (NM_001319847, intron 8 of 12)	intron (NM_001319847, intron 8 of 12)	-2276	NM_001365401	5498		NM_000309	ENSG00000143224	PPOX	PPO|V290M|VP|VPCO	protoporphyrinogen oxidase	protein-coding
209241	chr7	75869801	75870150	+	0	NA	Intergenic	Charlie20a|DNA|hAT-Charlie	-9017	NM_001346189	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
86618	chr16	67394601	67395550	+	0	NA	exon (NM_013304, exon 10 of 11)	exon (NM_013304, exon 10 of 11)	-1577	NM_016140	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
119379	chr19	40217001	40217450	+	0	NA	exon (NM_152479, exon 2 of 3)	exon (NM_152479, exon 2 of 3)	1174	NM_152479	148014		NM_152479	ENSG00000174521	TTC9B	-	tetratricopeptide repeat domain 9B	protein-coding
9718	chr1	53131771	53132330	+	0	NA	intron (NM_001287595, intron 2 of 10)	L2a|LINE|L2	10588	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
227786	chr9	93129801	93130350	+	0	NA	intron (NM_004148, intron 1 of 3)	intron (NM_004148, intron 1 of 3)	4176	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
102425	chr17	75652771	75653330	+	0	NA	intron (NM_001003716, intron 7 of 7)	intron (NM_001003716, intron 7 of 7)	6799	NM_001162997	100130933		NM_001162997	ENSG00000259120	SMIM6	C17orf110|ELN	small integral membrane protein 6	protein-coding
231753	chr9	132166621	132167280	+	0	NA	exon (NM_032536, exon 2 of 8)	exon (NM_032536, exon 2 of 8)	4892	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
15476	chr1	150361821	150362080	+	0	NA	Intergenic	AluSg|SINE|Alu	-2161	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
14449	chr1	144406871	144407630	+	0	NA	Intergenic	Intergenic	-5326	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
108754	chr18	77118671	77119330	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	13783	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
189905	chr5	177355901	177356380	+	0	NA	Intergenic	Intergenic	-1784	NM_006480	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
112702	chr19	7097821	7098080	+	0	NA	Intergenic	Intergenic	28247	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
22287	chr1	212782471	212782930	+	0	NA	intron (NM_001297737, intron 3 of 4)	intron (NM_001297737, intron 3 of 4)	9077	NM_001297739	25936		NM_015471	ENSG00000117697	NSL1	C1orf48|DC8|MIS14	NSL1 component of MIS12 kinetochore complex	protein-coding
177633	chr4	121194421	121195130	+	0	NA	intron (NM_001128843, intron 2 of 12)	intron (NM_001128843, intron 2 of 12)	21852	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
93093	chr17	17661401	17662150	+	0	NA	Intergenic	Intergenic	15913	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
222978	chr8	143211121	143212000	+	0	NA	Intergenic	CpG	-1658	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
198839	chr6	109304421	109304680	+	0	NA	intron (NR_152435, intron 29 of 45)	LTR53|LTR|ERVL	77189	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
122010	chr19	48595471	48595630	+	0	NA	intron (NM_177973, intron 5 of 6)	intron (NM_177973, intron 5 of 6)	-11192	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
218512	chr8	52941071	52941850	+	0	NA	3' UTR (NM_005285, exon 2 of 2)	3' UTR (NM_005285, exon 2 of 2)	2278	NM_005285	2831		NM_005285	ENSG00000288611	NPBWR1	GPR7	neuropeptides B and W receptor 1	protein-coding
58977	chr13	19866171	19866330	+	0	NA	Intergenic	AluSx|SINE|Alu	-2601	NM_001142684	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
235825	chrX	49276051	49276580	+	0	NA	intron (NM_033215, intron 1 of 3)	MIRc|SINE|MIR	6522	NM_033215	89801		NM_033215	ENSG00000049769	PPP1R3F	HB2E|LL0XNC01-7P3.1|R3F	protein phosphatase 1 regulatory subunit 3F	protein-coding
117935	chr19	33143751	33144350	+	0	NA	intron (NM_173479, intron 2 of 10)	MamGypLTR3|LTR|Gypsy	11936	NM_173479	126248		NM_173479	ENSG00000166359	WDR88	PQWD	WD repeat domain 88	protein-coding
162101	chr3	46903821	46904450	+	0	NA	TTS (NM_000316)	TTS (NM_000316)	21886	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
48706	chr12	10666701	10666900	+	0	NA	intron (NM_018423, intron 1 of 10)	THE1C|LTR|ERVL-MaLR	7252	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
28689	chr10	60780101	60780300	+	0	NA	exon (NM_001170407, exon 2 of 4)	exon (NM_001170407, exon 2 of 4)	1722	NM_001786	983		NM_001786	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin dependent kinase 1	protein-coding
216647	chr8	22122121	22122580	+	0	NA	intron (NM_018411, intron 8 of 17)	intron (NM_018411, intron 8 of 17)	8660	NM_005144	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
45723	chr11	119100071	119100550	+	0	NA	exon (NM_001382, exon 4 of 9)	exon (NM_001382, exon 4 of 9)	1543	NM_001382	1798		NM_001382	ENSG00000172269	DPAGT1	ALG7|CDG-Ij|CDG1J|CMS13|CMSTA2|D11S366|DGPT|DPAGT|DPAGT2|G1PT|GPT|UAGT|UGAT	dolichyl-phosphate N-acetylglucosaminephosphotransferase 1	protein-coding
189655	chr5	176304351	176304730	+	0	NA	intron (NR_131772, intron 3 of 9)	SVA_F|Retroposon|SVA	-8605	NM_001308200	375484		NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1|PLEIAD	SUMO interacting motifs containing 1	protein-coding
111048	chr19	3101601	3102000	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	7438	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
139021	chr2	218392801	218393480	+	0	NA	intron (NM_000578, intron 12 of 14)	intron (NM_000578, intron 12 of 14)	-5093	NM_001206878	58190		NM_021198	ENSG00000144579	CTDSP1	NIF3|NLI-IF|NLIIF|SCP1	CTD small phosphatase 1	protein-coding
198765	chr6	108691021	108691280	+	0	NA	Intergenic	Intergenic	-60504	NR_033376	387111		NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
213962	chr7	142786971	142787430	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	16230	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
168585	chr3	149020671	149021030	+	0	NA	intron (NM_001184721, intron 5 of 5)	intron (NM_001184721, intron 5 of 5)	29310	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
119073	chr19	39187271	39187730	+	0	NA	Intergenic	Intergenic	-9464	NM_001001414	342897		NM_001001414	ENSG00000188505	NCCRP1	FBXO50|NCCRP-1	NCCRP1, F-box associated domain containing	protein-coding
230427	chr9	128149171	128149530	+	0	NA	promoter-TSS (NM_005564)	promoter-TSS (NM_005564)	-103	NM_005564	3934		NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL|p25	lipocalin 2	protein-coding
27535	chr10	32321271	32321430	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	25808	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
206771	chr7	36711871	36712630	+	0	NA	intron (NM_001177506, intron 1 of 21)	intron (NM_001177506, intron 1 of 21)	12244	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
100429	chr17	60676921	60678330	+	0	NA	promoter-TSS (NM_001330414)	promoter-TSS (NM_001330414)	-226	NM_001320470	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
43961	chr11	93736501	93736900	+	0	NA	non-coding (NR_146090, exon 5 of 14)	non-coding (NR_146090, exon 5 of 14)	-1464	NR_002973	677822		NR_002973	ENSG00000210825	SNORA40	ACA40|SNORA40A	small nucleolar RNA, H/ACA box 40	snoRNA
133711	chr2	127362051	127362150	+	0	NA	intron (NM_001371911, intron 1 of 16)	intron (NM_001371911, intron 1 of 16)	-18871	NM_006609	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
236258	chrX	65866171	65866780	+	0	NA	Intergenic	Intergenic	-152395	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
55957	chr12	110014251	110014350	+	0	NA	intron (NM_033121, intron 3 of 14)	AluY|SINE|Alu	14870	NM_033121	88455		NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
64608	chr14	30619951	30620730	+	0	NA	TTS (NM_017769)	TTS (NM_017769)	-1914	NM_182835	23256		NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
58624	chr12	132497471	132497980	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	7574	NM_001382740	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
222301	chr8	133481101	133481500	+	0	NA	intron (NM_173344, intron 3 of 9)	L1MEg|LINE|L1	90587	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
208302	chr7	66083151	66083450	+	0	NA	intron (NM_001024943, intron 5 of 15)	intron (NM_001024943, intron 5 of 15)	7481	NM_001024946	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
212354	chr7	127590051	127590150	+	0	NA	exon (NM_001662, exon 4 of 6)	exon (NM_001662, exon 4 of 6)	1689	NM_001662	381		NM_001662	ENSG00000004059	ARF5	-	ADP ribosylation factor 5	protein-coding
173878	chr4	24558871	24559280	+	0	NA	intron (NM_001358, intron 3 of 13)	MLT1C|LTR|ERVL-MaLR	25479	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
222034	chr8	130201251	130202050	+	0	NA	intron (NM_001362924, intron 5 of 30)	intron (NM_001362924, intron 5 of 30)	94883	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
80157	chr16	2102851	2103150	+	0	NA	intron (NM_001009944, intron 23 of 45)	intron (NM_001009944, intron 23 of 45)	3748	NR_106965	102465985		NR_106965	ENSG00000283346	MIR6511B2	MIR6511B-2|hsa-mir-6511b-2	microRNA 6511b-2	ncRNA
69205	chr14	92680571	92681600	+	0	NA	intron (NM_024832, intron 8 of 9)	intron (NM_024832, intron 8 of 9)	67542	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
17397	chr1	156622301	156622700	+	0	NA	promoter-TSS (NR_135113)	promoter-TSS (NR_135113)	-572	NR_135113	101928177		NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
18456	chr1	161546351	161546650	+	0	NA	intron (NM_001127596, intron 4 of 5)	L2c|LINE|L2	3318	NM_000569	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
105549	chr17	83202051	83202150	+	0	NA	Intergenic	Intergenic	-24797	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
235547	chrX	47243101	47243500	+	0	NA	intron (NM_001371072, intron 12 of 20)	intron (NM_001371072, intron 12 of 20)	10291	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
161515	chr3	42589551	42589650	+	0	NA	intron (NM_016305, intron 1 of 3)	MER1B|DNA|hAT-Charlie	-1260	NM_001370300	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
63026	chr13	112874371	112874900	+	0	NA	intron (NM_032189, intron 27 of 28)	intron (NM_032189, intron 27 of 28)	94003	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
113069	chr19	8211901	8212550	+	0	NA	intron (NM_024552, intron 2 of 11)	L2b|LINE|L2	2855	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
141171	chr2	239274621	239275930	+	0	NA	intron (NM_006037, intron 2 of 26)	CpG	-30187	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
97103	chr17	42482721	42482980	+	0	NA	intron (NM_001378535, intron 8 of 22)	AluSx1|SINE|Alu	-11923	NR_049845	100847030		NR_049845	ENSG00000264314	MIR548AT	-	microRNA 548at	ncRNA
122237	chr19	49000671	49000830	+	0	NA	intron (NR_135578, intron 2 of 14)	AluSx|SINE|Alu	6863	NR_135578	10856		NM_006666	ENSG00000183207	RUVBL2	CGI-46|ECP-51|ECP51|INO80J|REPTIN|RVB2|TAP54-beta|TIH2|TIP48|TIP49B	RuvB like AAA ATPase 2	protein-coding
149429	chr21	31352821	31353550	+	0	NA	intron (NM_001353690, intron 1 of 27)	intron (NM_001353690, intron 1 of 27)	-8831	NM_001353687	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
192130	chr6	16756521	16757300	+	0	NA	intron (NM_000332, intron 1 of 8)	intron (NM_000332, intron 1 of 8)	3274	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
76409	chr15	74725451	74726720	+	0	NA	promoter-TSS (NM_001319216)	promoter-TSS (NM_001319216)	-557	NM_000499	1543		NM_000499	ENSG00000140465	CYP1A1	AHH|AHRR|CP11|CYP1|CYPIA1|P1-450|P450-C|P450DX	cytochrome P450 family 1 subfamily A member 1	protein-coding
172086	chr4	1043551	1044380	+	0	NA	Intergenic	Intergenic	31501	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
92749	chr17	14404301	14404900	+	0	NA	Intergenic	Intergenic	100860	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
30245	chr10	75074951	75075250	+	0	NA	Intergenic	Intergenic	-1458	NM_001003892	338599		NM_001003892	ENSG00000188716	DUSP29	DUPD1|DUSP27|FMDSP	dual specificity phosphatase 29	protein-coding
203681	chr7	1020101	1020300	+	0	NA	intron (NR_146964, intron 1 of 4)	CpG	2826	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
82570	chr16	18779001	18779600	+	0	NA	Intergenic	AluSq2|SINE|Alu	11034	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
170207	chr3	184137321	184137880	+	0	NA	intron (NM_003907, intron 2 of 15)	intron (NM_003907, intron 2 of 15)	2242	NM_003907	8893		NM_003907	ENSG00000145191	EIF2B5	CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM|VWM5	eukaryotic translation initiation factor 2B subunit epsilon	protein-coding
194298	chr6	32761211	32761980	+	0	NA	intron (NM_001198858, intron 2 of 4).4	CpG	1937	NM_001300790	3120		NM_182549	ENSG00000232629	HLA-DQB2	DQB2|HLA-DQB1|HLA-DXB	major histocompatibility complex, class II, DQ beta 2	protein-coding
147627	chr20	62147451	62147750	+	0	NA	intron (NM_198935, intron 1 of 10)	intron (NM_198935, intron 1 of 10)	3831	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
70593	chr14	102773051	102773150	+	0	NA	Intergenic	(CCTT)n|Simple_repeat|Simple_repeat	-4349	NM_003300	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
55435	chr12	104532671	104532830	+	0	NA	intron (NM_018413, intron 1 of 2)	LTR55|LTR|ERVL?	-58883	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
38962	chr11	47542101	47542450	+	0	NA	intron (NM_001376458, intron 1 of 13)	AluSq|SINE|Alu	10857	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
34557	chr10	133137621	133138280	+	0	NA	Intergenic	Intergenic	-22269	NM_001347864	85442		NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND	kinase non-catalytic C-lobe domain containing 1	protein-coding
163440	chr3	50590371	50591600	+	0	NA	3' UTR (NM_001377425, exon 11 of 11)	3' UTR (NM_001377425, exon 11 of 11)	-19958	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
157558	chr22	45863871	45864500	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	103661	NR_039919	100616253		NR_039919	ENSG00000264160	MIR4762	-	microRNA 4762	ncRNA
83784	chr16	28746651	28747130	+	0	NA	Intergenic	CpG	-5545	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
68551	chr14	89356771	89357130	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	60283	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
87586	chr16	73057701	73058230	+	0	NA	intron (NM_001164766, intron 1 of 8)	CpG	1056	NM_001164766	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
151170	chr21	44966221	44966480	+	0	NA	intron (NM_001316983, intron 3 of 5)	intron (NM_001316983, intron 3 of 5)	26321	NM_058190	85395		NM_058190	ENSG00000160256	SLX9	C21orf70|FAM207A|PRED56	SLX9 ribosome biogenesis factor	protein-coding
65620	chr14	52280851	52281150	+	0	NA	Intergenic	PRIMA4-int|LTR|ERV1	13302	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
124533	chr2	260901	261100	+	0	NA	non-coding (NR_104223, exon 3 of 12)	non-coding (NR_104223, exon 3 of 12)	130	NR_104227	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
215544	chr7	158790551	158790650	+	0	NA	intron (NM_020728, intron 4 of 21)	intron (NM_020728, intron 4 of 21)	38909	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
187327	chr5	141643601	141643800	+	0	NA	intron (NM_033449, intron 17 of 19)	AluSp|SINE|Alu	6703	NM_173828	285613		NM_173828	ENSG00000164620	RELL2	C5orf16	RELT like 2	protein-coding
190364	chr5	179735501	179736100	+	0	NA	intron (NM_014757, intron 1 of 4)	AluSg|SINE|Alu	2978	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
27432	chr10	31751901	31752100	+	0	NA	Intergenic	Intergenic	156926	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
11314	chr1	89325551	89325650	+	0	NA	Intergenic	L1PA4|LINE|L1	-35238	NR_077244	729930		NR_077244		LOC729930	-	intraflagellar transport associated protein pseudogene	pseudo
232357	chr9	135701371	135702480	+	0	NA	promoter-TSS (NM_001272003)	promoter-TSS (NM_001272003)	-260	NM_001272003	57582		NM_020822	ENSG00000107147	KCNT1	DEE14|EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
178686	chr4	152529701	152530180	+	0	NA	intron (NM_001349798, intron 2 of 13)	AluSx3|SINE|Alu	5093	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
102359	chr17	75513021	75513600	+	0	NA	intron (NM_020753, intron 2 of 19)	AluSz|SINE|Alu	2227	NM_020753	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
147771	chr20	62523671	62524230	+	0	NA	Intergenic	Intergenic	-26503	NM_178463	128826		NM_178463	ENSG00000174407	MIR1-1HG	C20orf166|MIR133A2HG	MIR1-1 host gene	ncRNA
103267	chr17	77692521	77692850	+	0	NA	Intergenic	Intergenic	35874	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
233269	chr9	137295301	137296330	+	0	NA	Intergenic	CpG	6456	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
34932	chr11	436701	437100	+	0	NA	intron (NM_001347882, intron 1 of 21)	intron (NM_001347882, intron 1 of 21)	5111	NM_001347882	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
187243	chr5	141382571	141382880	+	0	NA	promoter-TSS (NM_018920)	promoter-TSS (NM_018920)	-17	NM_018920	56108		NM_018920	ENSG00000253537	PCDHGA7	PCDH-GAMMA-A7	protocadherin gamma subfamily A, 7	protein-coding
41676	chr11	66615171	66615430	+	0	NA	Intergenic	L2a|LINE|L2	-1282	NM_001198845	100526737		NM_001198845	ENSG00000248643	RBM14-RBM4	COAZ|PSP2|RBM14|SIP	RBM14-RBM4 readthrough	protein-coding
98872	chr17	48530151	48530450	+	0	NA	intron (NM_002144, intron 1 of 1)	intron (NM_002144, intron 1 of 1)	711	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
228733	chr9	109320821	109321280	+	0	NA	promoter-TSS (NM_018424)	promoter-TSS (NM_018424)	9	NM_001385623	54566		NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2|LULU2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
44641	chr11	110287571	110287800	+	0	NA	intron (NM_001260496, intron 1 of 7)	intron (NM_001260496, intron 1 of 7)	8929	NM_002906	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
170513	chr3	186514371	186514680	+	0	NA	Intergenic	MIRb|SINE|MIR	-20864	NR_033844	253573		NR_033844	ENSG00000224406	LINC02052	-	long intergenic non-protein coding RNA 2052	ncRNA
57009	chr12	120579651	120580200	+	0	NA	intron (NM_015918, intron 2 of 4)	intron (NM_015918, intron 2 of 4)	1473	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
210424	chr7	100080771	100082200	+	0	NA	intron (NM_001371211, intron 1 of 5)	CpG	238	NM_001371216	7551		NM_017715	ENSG00000166526	ZNF3	A8-51|HF.12|KOX25|PP838|Zfp113	zinc finger protein 3	protein-coding
157770	chr22	46738901	46739900	+	0	NA	Intergenic	Intergenic	-1148	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
223082	chr8	143409801	143410000	+	0	NA	Intergenic	Intergenic	-7779	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
27254	chr10	29683251	29683550	+	0	NA	intron (NM_003174, intron 2 of 35)	MER4B|LTR|ERV1	-48429	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
35296	chr11	990171	990330	+	0	NA	intron (NR_144509, intron 10 of 20)	intron (NR_144509, intron 10 of 20)	46468	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
53027	chr12	57592601	57592800	+	0	NA	intron (NM_001146258, intron 1 of 10)	intron (NM_001146258, intron 1 of 10)	1508	NM_001146258	79837		NM_024779	ENSG00000166908	PIP4K2C	PIP5K2C	phosphatidylinositol-5-phosphate 4-kinase type 2 gamma	protein-coding
83467	chr16	27365371	27366350	+	0	NA	Intergenic	MIR|SINE|MIR	-36314	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
171616	chr3	197445001	197445400	+	0	NA	Intergenic	Intergenic	64461	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
116058	chr19	17221421	17222280	+	0	NA	Intergenic	AluJb|SINE|Alu	-4376	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
224311	chr9	6667621	6667900	+	0	NA	Intergenic	Intergenic	-22031	NM_000170	2731		NM_000170	ENSG00000178445	GLDC	GCE|GCE1|GCSP|HYGN1	glycine decarboxylase	protein-coding
6083	chr1	27236801	27237000	+	0	NA	intron (NM_015023, intron 1 of 15)	AluSg7|SINE|Alu	2268	NM_015023	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
97436	chr17	43544071	43544680	+	0	NA	3' UTR (NM_001322219, exon 24 of 24)	3' UTR (NM_001322219, exon 24 of 24)	1524	NM_001986	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
112445	chr19	6373001	6374450	+	0	NA	intron (NM_032306, intron 1 of 3)	intron (NM_032306, intron 1 of 3)	931	NM_032306	84266		NM_032306	ENSG00000125652	ALKBH7	ABH7|SPATA11|UNQ6002	alkB homolog 7	protein-coding
96233	chr17	39796271	39796630	+	0	NA	intron (NM_001257408, intron 2 of 6)	L2b|LINE|L2	-18225	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
239273	chrY	13701851	13702150	+	0	NA	Intergenic	Intergenic	-1899	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
63218	chr13	113852901	113853300	+	0	NA	intron (NM_000820, intron 2 of 14)	intron (NM_000820, intron 2 of 14)	10976	NM_000820	2621		NM_000820	ENSG00000183087	GAS6	AXLLG|AXSF	growth arrest specific 6	protein-coding
219221	chr8	66713751	66714480	+	0	NA	intron (NM_001033578, intron 1 of 16)	intron (NM_001033578, intron 1 of 16)	1334	NM_001033578	23678		NM_013257	ENSG00000104205	SGK3	CISK|SGK2|SGKL	serum/glucocorticoid regulated kinase family member 3	protein-coding
231248	chr9	129986651	129987530	+	0	NA	intron (NM_001363755, intron 2 of 15)	L1M7|LINE|L1	56099	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
69890	chr14	99393021	99393350	+	0	NA	Intergenic	Intergenic	87674	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
30032	chr10	73798001	73798480	+	0	NA	non-coding (NR_160292, exon 21 of 27)	non-coding (NR_160292, exon 21 of 27)	3159	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
161386	chr3	41201671	41202350	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	2505	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
126338	chr2	27375051	27375150	+	0	NA	non-coding (NR_049786, exon 9 of 15)	non-coding (NR_049786, exon 9 of 15)	4484	NR_049788	9784		NM_014748	ENSG00000115234	SNX17	-	sorting nexin 17	protein-coding
218931	chr8	60905251	60905550	+	0	NA	Intergenic	L2b|LINE|L2	5398	NR_168431	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
184592	chr5	102971721	102972130	+	0	NA	intron (NM_001364588, intron 14 of 24)	intron (NM_001364588, intron 14 of 24)	106102	NR_033440	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
65956	chr14	56004621	56005250	+	0	NA	Intergenic	Intergenic	-113476	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
32169	chr10	101565271	101565600	+	0	NA	Intergenic	Intergenic	22822	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
28876	chr10	62732901	62734180	+	0	NA	Intergenic	Intergenic	-71180	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
136629	chr2	179049151	179049600	+	0	NA	intron (NM_173648, intron 1 of 23)	intron (NM_173648, intron 1 of 23)	762	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
206627	chr7	35906271	35906800	+	0	NA	3' UTR (NM_001242956, exon 12 of 12)	3' UTR (NM_001242956, exon 12 of 12)	105316	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
58125	chr12	124895251	124896530	+	0	NA	Intergenic	AluJb|SINE|Alu	18760	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
148129	chr20	63469571	63470130	+	0	NA	intron (NM_001382235, intron 1 of 16)	intron (NM_001382235, intron 1 of 16)	2805	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
168316	chr3	141603371	141603730	+	0	NA	intron (NM_001303246, intron 20 of 24)	AluSq2|SINE|Alu	-59649	NR_136190	646730		NR_136190		LINC02618	-	long intergenic non-protein coding RNA 2618	ncRNA
42474	chr11	69835301	69835500	+	0	NA	Intergenic	(CGCGGT)n|Simple_repeat|Simple_repeat	-15984	NM_005247	2248		NM_005247	ENSG00000186895	FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
55532	chr12	105326551	105327980	+	0	NA	promoter-TSS (NR_131986)	promoter-TSS (NR_131986)	-248	NR_131986	105369954		NR_131986	ENSG00000257642	C12orf75-AS1	KCCAT198	C12orf75 antisense RNA 1	ncRNA
64494	chr14	24322951	24323250	+	0	NA	intron (NM_001198592, intron 18 of 25).2	intron (NM_001198592, intron 18 of 25).2	9993	NM_181657	1241		NM_181657	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
25391	chr10	6502521	6502780	+	0	NA	intron (NM_001282645, intron 3 of 16)	intron (NM_001282645, intron 3 of 16)	77626	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
21399	chr1	205283551	205283850	+	0	NA	Intergenic	MER34A|LTR|ERV1	26503	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
69865	chr14	99272901	99273890	+	0	NA	Intergenic	CpG-7606	-1198	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
227422	chr9	89715371	89715730	+	0	NA	intron (NR_024280, intron 5 of 5)	MLT1F2-int|LTR|ERVL-MaLR	75767	NR_024280	100129066		NR_024280	ENSG00000237372	LINC03062	-	long intergenic non-protein coding RNA 3062	ncRNA
123989	chr19	55444371	55444530	+	0	NA	Intergenic	AluJr|SINE|Alu	-1587	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
213898	chr7	142473671	142473830	+	0	NA	promoter-TSS (NR_162121)	promoter-TSS (NR_162121)	-777	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
228634	chr9	105881771	105882130	+	0	NA	Intergenic	Intergenic	187409	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
203064	chr6	166254101	166254300	+	0	NA	intron (NR_125862, intron 2 of 4)	intron (NR_125862, intron 2 of 4)	17231	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
53199	chr12	62261971	62262130	+	0	NA	intron (NM_001351164, intron 1 of 21)	AluJb|SINE|Alu	1646	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
124000	chr19	55455851	55456550	+	0	NA	intron (NM_024710, intron 2 of 5)	MSR1|Satellite|Satellite	5442	NM_001136201	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
31947	chr10	100657851	100657950	+	0	NA	Intergenic	Intergenic	-77496	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
204554	chr7	5129471	5130000	+	0	NA	intron (NR_034163, intron 3 of 5)	intron (NR_034163, intron 3 of 5)	14811	NR_034163	645700		NR_034163	ENSG00000291037	ZNF890P	-	zinc finger protein 890, pseudogene	pseudo
37894	chr11	34057271	34058150	+	0	NA	intron (NM_203364, intron 2 of 17)	AluSq2|SINE|Alu	5979	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
25856	chr10	11239051	11239150	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	74070	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
221186	chr8	120724601	120725200	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-36353	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
237153	chrX	107449621	107450100	+	0	NA	Intergenic	CpG	-72590	NM_032428	84443		NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
68976	chr14	91454671	91455580	+	0	NA	Intergenic	AluJb|SINE|Alu	-37305	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
110449	chr19	1987701	1988900	+	0	NA	intron (NM_017797, intron 5 of 8)	intron (NM_017797, intron 5 of 8)	27414	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
121680	chr19	47507571	47508530	+	0	NA	intron (NR_038456, intron 1 of 11)	intron (NR_038456, intron 1 of 11)	7013	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
196895	chr6	52303271	52303830	+	0	NA	Intergenic	Intergenic	-18808	NM_001270472	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
149355	chr21	29295101	29295800	+	0	NA	Intergenic	LTR28C|LTR|ERV1	-3472	NM_001186	571		NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding
211907	chr7	112288221	112288680	+	0	NA	intron (NM_021994, intron 2 of 11)	MIRc|SINE|MIR	81755	NM_021994	11179		NM_021994	ENSG00000198839	ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
182123	chr5	56102121	56102600	+	0	NA	intron (NM_024669, intron 11 of 11)	AluSx1|SINE|Alu	107193	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
125894	chr2	24742551	24742850	+	0	NA	intron (NM_147233, intron 17 of 20)	AluSx|SINE|Alu	-50415	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
236743	chrX	78189101	78189430	+	0	NA	Intergenic	L1PA3|LINE|L1	-49615	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
130178	chr2	82875971	82876130	+	0	NA	Intergenic	L1PA11|LINE|L1	19247	NR_033423	1720		NR_033423		DHFRP3	-	dihydrofolate reductase pseudogene 3	pseudo
29965	chr10	73625301	73627250	+	0	NA	promoter-TSS (NM_001378208)	promoter-TSS (NM_001378208)	-294	NM_001378208	159195		NM_152586	ENSG00000166348	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
164111	chr3	56680971	56681530	+	0	NA	intron (NM_001365638, intron 1 of 22)	intron (NM_001365638, intron 1 of 22)	1987	NM_001363940	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
101028	chr17	64783701	64784580	+	0	NA	TTS (NR_024386)	TTS (NR_024386)	-2141	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
72638	chr15	38485371	38485930	+	0	NA	3' UTR (NM_173611, exon 8 of 8)	3' UTR (NM_173611, exon 8 of 8)	31523	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
78987	chr15	101721971	101722130	+	0	NA	intron (NM_152334, intron 2 of 18)	MER47A|DNA|TcMar-Tigger	2423	NM_152334	123283		NM_152334	ENSG00000185418	TARS3	TARSL2|ThrRS-L	threonyl-tRNA synthetase 3	protein-coding
128610	chr2	61143051	61143550	+	0	NA	non-coding (NR_036496, exon 2 of 2)	non-coding (NR_036496, exon 2 of 2)	1675	NR_036496	339803		NR_036496	ENSG00000212978	C2orf74-DT	-	C2orf74 divergent transcript	ncRNA
115529	chr19	15447801	15448400	+	0	NA	intron (NM_001371589, intron 2 of 12)	intron (NM_001371589, intron 2 of 12)	-1448	NR_031716	100302127		NR_031716	ENSG00000269782	MIR1470	MIRN1470|hsa-mir-1470	microRNA 1470	ncRNA
2093	chr1	7963151	7963450	+	0	NA	intron (NM_007262, intron 2 of 6)	AluJb|SINE|Alu	1589	NM_007262	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
183414	chr5	78286301	78286510	+	0	NA	intron (NM_003664, intron 1 of 26)	MLT1A1|LTR|ERVL-MaLR	8293	NM_003664	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
228116	chr9	96619171	96620280	+	0	NA	non-coding (NR_147239, exon 1 of 15)	non-coding (NR_147239, exon 1 of 15)	118	NM_003671	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
121569	chr19	47267371	47268200	+	0	NA	intron (NM_015603, intron 8 of 11)	intron (NM_015603, intron 8 of 11)	-6638	NR_037675	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
114712	chr19	13159351	13159450	+	0	NA	Intergenic	AluSz|SINE|Alu	8989	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
154792	chr22	36816821	36817500	+	0	NA	promoter-TSS (NM_001315532)	promoter-TSS (NM_001315532)	-125	NM_001315532	5816		NM_002854	ENSG00000100362	PVALB	D22S749	parvalbumin	protein-coding
211657	chr7	106266671	106266830	+	0	NA	intron (NM_005746, intron 6 of 10)	intron (NM_005746, intron 6 of 10)	18233	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
144462	chr20	35589051	35589350	+	0	NA	intron (NR_119376, intron 21 of 42)	MER75B|DNA|PiggyBac	18362	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
213866	chr7	142321401	142321630	+	0	NA	Intergenic	Intergenic	-49266	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
29990	chr10	73747901	73748300	+	0	NA	intron (NM_198597, intron 2 of 22)	intron (NM_198597, intron 2 of 22)	3728	NM_198597	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
160060	chr3	18649551	18650180	+	0	NA	Intergenic	Intergenic	-204273	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
234961	chrX	39162451	39162830	+	0	NA	Intergenic	CpG	164722	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
148994	chr21	14382721	14384180	+	0	NA	promoter-TSS (NM_006948)	promoter-TSS (NM_006948)	-304	NM_006948	6782		NM_006948	ENSG00000155304	HSPA13	STCH	heat shock protein family A (Hsp70) member 13	protein-coding
181158	chr5	39005551	39006030	+	0	NA	intron (NM_001285439, intron 3 of 38)	intron (NM_001285439, intron 3 of 38)	68609	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
187570	chr5	142795021	142795580	+	0	NA	intron (NM_001349547, intron 1 of 21)	MIRb|SINE|MIR	24073	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
236644	chrX	75155821	75156680	+	0	NA	promoter-TSS (NM_001363821)	promoter-TSS (NM_001363821)	33	NM_001271696	22		NM_004299	ENSG00000131269	ABCB7	ABC7|ASAT|Atm1p|EST140535	ATP binding cassette subfamily B member 7	protein-coding
95852	chr17	38824651	38825930	+	0	NA	promoter-TSS (NR_039880)	promoter-TSS (NR_039880)	31	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
102053	chr17	74876351	74876450	+	0	NA	TTS (NM_178128)	TTS (NM_178128)	-3406	NM_001258013	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
100355	chr17	59938751	59938850	+	0	NA	intron (NR_161458, intron 13 of 15)	MER20|DNA|hAT-Charlie	25940	NM_016125	51136		NM_016125	ENSG00000189050	RNFT1	PTD016	ring finger protein, transmembrane 1	protein-coding
57663	chr12	122733351	122733650	+	0	NA	Intergenic	AluJb|SINE|Alu	-2656	NM_032554	27198		NM_032554	ENSG00000196917	HCAR1	FKSG80|GPR104|GPR81|HCA1|LACR1|TA-GPCR|TAGPCR	hydroxycarboxylic acid receptor 1	protein-coding
142820	chr20	16732471	16733330	+	0	NA	intron (NM_198220, intron 3 of 6)	L2|LINE|L2	2874	NM_003092	6629		NM_003092	ENSG00000125870	SNRPB2	Msl1|U2B''	small nuclear ribonucleoprotein polypeptide B2	protein-coding
124281	chr19	57819151	57820330	+	0	NA	Intergenic	CpG	-4827	NM_024762	79818		NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
218759	chr8	58960801	58961000	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	158247	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
144575	chr20	35775101	35775300	+	0	NA	intron (NM_016436, intron 1 of 17)	MER5A1|DNA|hAT-Charlie	3185	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
2403	chr1	9557651	9557950	+	0	NA	intron (NM_032315, intron 2 of 6)	intron (NM_032315, intron 2 of 6)	18335	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
152821	chr22	21866051	21868850	+	0	NA	5' UTR (NM_002745, exon 1 of 9)	5' UTR (NM_002745, exon 1 of 9)	195	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
166409	chr3	113694051	113694350	+	0	NA	intron (NR_111981, intron 1 of 6)	intron (NR_111981, intron 1 of 6)	2442	NR_111981	205717		NM_001009899	ENSG00000176542	USF3	KIAA2018	upstream transcription factor family member 3	protein-coding
123548	chr19	54374951	54375850	+	0	NA	Intergenic	Intergenic	-4844	NM_001289026	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
138348	chr2	203886821	203887080	+	0	NA	Intergenic	Intergenic	19179	NM_001037631	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
234855	chrX	24709021	24709280	+	0	NA	intron (NR_165483, intron 4 of 35)	SVA_F|Retroposon|SVA	15232	NM_001330360	5422		NM_016937	ENSG00000101868	POLA1	NSX|PDR|POLA|VEODS|p180	DNA polymerase alpha 1, catalytic subunit	protein-coding
171134	chr3	195545761	195546850	+	0	NA	Intergenic	Intergenic	-2980	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
209374	chr7	76300121	76301000	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-2113	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
338	chr1	998071	998230	+	0	NA	TTS (NM_021170)	TTS (NM_021170)	1947	NM_021170	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
130062	chr2	74462501	74462900	+	0	NA	exon (NM_001146158, exon 5 of 5)	exon (NM_001146158, exon 5 of 5)	2682	NM_006302	7841		NM_006302	ENSG00000115275	MOGS	CDG2B|CWH41|DER7|GCS1	mannosyl-oligosaccharide glucosidase	protein-coding
52901	chr12	57218751	57219450	+	0	NA	intron (NM_007224, intron 1 of 1)	intron (NM_007224, intron 1 of 1)	2306	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
154547	chr22	36175971	36176150	+	0	NA	Intergenic	Intergenic	-9883	NM_145641	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
129593	chr2	70083351	70084000	+	0	NA	non-coding (NR_033872, exon 3 of 11)	non-coding (NR_033872, exon 3 of 11)	3340	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
203408	chr7	152071	152430	+	0	NA	intron (NR_108065, intron 1 of 1)	AluJo|SINE|Alu	2532	NR_108064	100507642		NR_108064	ENSG00000240859	LINC03014	-	long intergenic non-protein coding RNA 3014	ncRNA
126790	chr2	30310921	30311250	+	0	NA	Intergenic	Intergenic	-35561	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
38796	chr11	47266301	47266980	+	0	NA	intron (NM_001251934, intron 7 of 9)	AluSx|SINE|Alu	-2548	NM_001376651	8567		NM_003682	ENSG00000110514	MADD	DEEAH|DENN|IG20|NEDDISH|RAB3GEP|RabGEF	MAP kinase activating death domain	protein-coding
199238	chr6	111827451	111827550	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	45571	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
52372	chr12	55682321	55682580	+	0	NA	intron (NM_152637, intron 1 of 1)	intron (NM_152637, intron 1 of 1)	714	NM_152637	196410		NM_152637	ENSG00000170439	TMT1B	ALDI|METTL7B	thiol methyltransferase 1B	protein-coding
149967	chr21	36429851	36430450	+	0	NA	Intergenic	Intergenic	36317	NM_012130	23562		NM_012130	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
86769	chr16	67673721	67674330	+	0	NA	TTS (NR_027398)	TTS (NR_027398)	7211	NM_001012984	388284		NM_001012984	ENSG00000159761	C16orf86	-	chromosome 16 open reading frame 86	protein-coding
198928	chr6	110364401	110364600	+	0	NA	Intergenic	Intergenic	-6228	NM_001123364	728464		NM_001123364	ENSG00000053328	METTL24	C6orf186	methyltransferase like 24	protein-coding
182770	chr5	68315371	68316300	+	0	NA	Intergenic	Intergenic	23258	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
87292	chr16	70063421	70063850	+	0	NA	intron (NR_003610, intron 1 of 25)	AluSg|SINE|Alu	2313	NR_003610	283970		NM_199134	ENSG00000196696	PDXDC2P-NPIPB14P	-	PDXDC2P-NPIPB14P readthrough, transcribed pseudogene	pseudo
19882	chr1	183632451	183633180	+	0	NA	intron (NM_005717, intron 2 of 3)	intron (NM_005717, intron 2 of 3)	2968	NM_005717	10092		NM_005717	ENSG00000162704	ARPC5	ARC16|IMD113|dJ127C7.3|p16-Arc	actin related protein 2/3 complex subunit 5	protein-coding
70072	chr14	100150721	100151480	+	0	NA	intron (NM_206918, intron 1 of 2)	intron (NM_206918, intron 1 of 2)	8545	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
152243	chr22	20203921	20204650	+	0	NA	intron (NR_038460, intron 2 of 3)	intron (NR_038460, intron 2 of 3)	633	NR_038460	284865		NR_038460	ENSG00000249923	LINC02891	lnc-RTN4R-1	long intergenic non-protein coding RNA 2891	ncRNA
86538	chr16	67176871	67177300	+	0	NA	intron (NM_001369684, intron 6 of 6)	intron (NM_001369684, intron 6 of 6)	3232	NM_001276311	8996		NM_003946	ENSG00000140939	NOL3	ARC|FCM|MYOCL1|MYP|NOP|NOP30	nucleolar protein 3	protein-coding
43986	chr11	94136701	94136980	+	0	NA	intron (NM_015368, intron 1 of 4)	MSTA|LTR|ERVL-MaLR	7999	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
109326	chr19	592251	593230	+	0	NA	intron (NM_001194, intron 1 of 7)	intron (NM_001194, intron 1 of 7)	2859	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
76903	chr15	78001071	78001380	+	0	NA	intron (NM_144572, intron 12 of 12)	intron (NM_144572, intron 12 of 12)	-7000	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
47264	chr12	1530871	1531500	+	0	NA	non-coding (NR_160736, exon 2 of 2)	non-coding (NR_160736, exon 2 of 2)	1007	NR_160736	107984507		NR_160736		LOC107984507	-	uncharacterized LOC107984507	ncRNA
120289	chr19	43460421	43460680	+	0	NA	TTS (NM_014400)	TTS (NM_014400)	5058	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
152327	chr22	20395471	20396200	+	0	NA	intron (NM_001256524, intron 3 of 5)	intron (NM_001256524, intron 3 of 5)	1684	NR_046282	7625		NM_003426	ENSG00000185252	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
25021	chr10	3623201	3623400	+	0	NA	intron (NR_131187, intron 1 of 1)	intron (NR_131187, intron 1 of 1)	-120462	NR_155744	101927880		NR_155743	ENSG00000233321	LINC02669	-	long intergenic non-protein coding RNA 2669	ncRNA
21029	chr1	203006421	203008230	+	0	NA	promoter-TSS (NR_136531)	promoter-TSS (NR_136531)	-42	NR_146285	92703		NM_138391	ENSG00000163444	TMEM183A	C1orf37	transmembrane protein 183A	protein-coding
126461	chr2	28355801	28356950	+	0	NA	Intergenic	Intergenic	-36483	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
96315	chr17	39983001	39983200	+	0	NA	intron (NM_002809, intron 1 of 11)	AluSx1|SINE|Alu	2293	NM_002809	5709		NM_002809	ENSG00000108344	PSMD3	P58|RPN3|S3|TSTA2	proteasome 26S subunit, non-ATPase 3	protein-coding
156002	chr22	39932001	39932280	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	5536	NM_001291828	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
127106	chr2	37637171	37637330	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	34392	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
35485	chr11	1511951	1512050	+	0	NA	Intergenic	Intergenic	-25221	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
87561	chr16	72008121	72009350	+	0	NA	promoter-TSS (NM_001361)	promoter-TSS (NM_001361)	-9	NM_001361	1723		NM_001361	ENSG00000102967	DHODH	DHOdehase|POADS|URA1	dihydroorotate dehydrogenase (quinone)	protein-coding
227600	chr9	92706451	92706750	+	0	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	-36469	NM_022755	64768		NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
36510	chr11	6414951	6415550	+	0	NA	intron (NM_145689, intron 1 of 13)	intron (NM_145689, intron 1 of 13)	3844	NM_001164	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
212182	chr7	117006751	117007050	+	0	NA	intron (NR_161422, intron 1 of 14)	Tigger1|DNA|TcMar-Tigger	-8012	NM_001369602	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
146913	chr20	51588901	51589100	+	0	NA	Intergenic	MIRc|SINE|MIR	-26161	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
230969	chr9	129460001	129461280	+	0	NA	Intergenic	CpG	-28020	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
100967	chr17	64513301	64513900	+	0	NA	intron (NM_138363, intron 3 of 19)	intron (NM_138363, intron 3 of 19)	6623	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
117987	chr19	33519551	33520030	+	0	NA	intron (NM_000285, intron 1 of 14)	AluSq2|SINE|Alu	2001	NM_001166056	5184		NM_000285	ENSG00000124299	PEPD	PROLIDASE	peptidase D	protein-coding
133705	chr2	127348021	127348480	+	0	NA	intron (NM_001371911, intron 1 of 16)	AluSx1|SINE|Alu	-5021	NM_006609	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
81845	chr16	11595971	11596130	+	0	NA	Intergenic	Intergenic	-8584	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
146282	chr20	49108201	49108600	+	0	NA	Intergenic	AluYb8|SINE|Alu	62088	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
185348	chr5	127006771	127006930	+	0	NA	intron (NM_178450, intron 1 of 4)	Charlie7|DNA|hAT-Charlie	23708	NM_178450	115123		NM_178450	ENSG00000173926	MARCHF3	MARCH-III|MARCH3|RNF173	membrane associated ring-CH-type finger 3	protein-coding
114441	chr19	12698001	12698200	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1469	NM_032301	84261		NM_032301	ENSG00000132004	FBXW9	Fbw9|MEC-15	F-box and WD repeat domain containing 9	protein-coding
74972	chr15	63836621	63836880	+	0	NA	Intergenic	Intergenic	-2802	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
67144	chr14	68695251	68695730	+	0	NA	Intergenic	Intergenic	-66703	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
222315	chr8	133498001	133498900	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	73437	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
227950	chr9	94725371	94725550	+	0	NA	Intergenic	L2b|LINE|L2	-1209	NM_032823	84909		NM_032823	ENSG00000148120	AOPEP	AP-O|APO|C90RF3|C9orf3|DYT31|ONPEP	aminopeptidase O (putative)	protein-coding
140326	chr2	232526471	232526830	+	0	NA	TTS (NM_001195129)	TTS (NM_001195129)	490	NM_000751	1144		NM_000751	ENSG00000135902	CHRND	ACHRD|CMS2A|CMS3A|CMS3B|CMS3C|FCCMS|SCCMS	cholinergic receptor nicotinic delta subunit	protein-coding
233137	chr9	137155471	137155800	+	0	NA	intron (NM_007327, intron 4 of 19)	intron (NM_007327, intron 4 of 19)	13635	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
12204	chr1	100389801	100390000	+	0	NA	intron (NM_001319210, intron 3 of 16)	intron (NM_001319210, intron 3 of 16)	37394	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
103139	chr17	77399051	77399650	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	-2296	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
74301	chr15	58126071	58126290	+	0	NA	Intergenic	L1PA2|LINE|L1	-11989	NM_001320636	366		NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
220013	chr8	90553901	90554250	+	0	NA	Intergenic	Intergenic	51988	NR_104062	101937451		NR_104062	ENSG00000253799	LINC01030	-	long intergenic non-protein coding RNA 1030	ncRNA
53397	chr12	64699171	64699330	+	0	NA	Intergenic	AluSg|SINE|Alu	60156	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
385	chr1	1044751	1045500	+	0	NA	intron (NM_198576, intron 12 of 35)	intron (NM_198576, intron 12 of 35)	11132	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
192252	chr6	20210851	20211250	+	0	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	1419	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
160119	chr3	19956821	19957380	+	0	NA	intron (NM_001292048, intron 2 of 5)	AluJo|SINE|Alu	10003	NM_004162	5868		NM_004162	ENSG00000144566	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
173582	chr4	10160221	10160680	+	0	NA	Intergenic	Intergenic	-43651	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
161501	chr3	42539471	42540550	+	0	NA	Intergenic	Intergenic	-7404	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
79364	chr16	632351	632850	+	0	NA	exon (NM_053284, exon 2 of 2)	exon (NM_053284, exon 2 of 2)	1615	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
294	chr1	955951	956650	+	0	NA	intron (NM_015658, intron 4 of 18)	intron (NM_015658, intron 4 of 18)	2956	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
56680	chr12	120008821	120009080	+	0	NA	intron (NR_147894, intron 3 of 8)	intron (NR_147894, intron 3 of 8)	19106	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
211878	chr7	111089821	111090250	+	0	NA	promoter-TSS (NM_001099660)	promoter-TSS (NM_001099660)	-971	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
21197	chr1	203860971	203862330	+	0	NA	promoter-TSS (NM_003094)	promoter-TSS (NM_003094)	51	NR_130746	6635		NM_003094	ENSG00000182004	SNRPE	HYPT11|SME|Sm-E|snRNP-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
75567	chr15	67055871	67056830	+	0	NA	intron (NR_135686, intron 2 of 5)	MIR|SINE|MIR	7832	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
45866	chr11	119684421	119684680	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	44650	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
49955	chr12	40149671	40149900	+	0	NA	Intergenic	Intergenic	-6454	NR_146526	105369734		NR_146526		LINC02471	-	long intergenic non-protein coding RNA 2471	ncRNA
224817	chr9	26896201	26896400	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-3472	NM_001167575	79886		NM_024828	ENSG00000120159	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
32367	chr10	102397221	102397480	+	0	NA	exon (NM_001261403, exon 6 of 22)	exon (NM_001261403, exon 6 of 22)	1645	NM_001261403	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
201936	chr6	151450571	151451030	+	0	NA	intron (NM_017909, intron 1 of 11)	SVA_D|Retroposon|SVA	1326	NM_017909	55005		NM_017909	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog	protein-coding
232965	chr9	136962401	136963130	+	0	NA	Intergenic	Intergenic	-6647	NR_157392	101928638		NM_001101674		LINC02692	C9orf141|PRR31	long intergenic non-protein coding RNA 2692	ncRNA
178263	chr4	143616871	143617030	+	0	NA	intron (NM_001168235, intron 5 of 7)	intron (NM_001168235, intron 5 of 7)	57478	NR_003675	441046		NM_001011539	ENSG00000251600	GUSBP5	GYPELOC441046	GUSB pseudogene 5	pseudo
189911	chr5	177364451	177364980	+	0	NA	intron (NM_006480, intron 1 of 14)	intron (NM_006480, intron 1 of 14)	6791	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
42732	chr11	72695271	72695580	+	0	NA	exon (NM_001135190, exon 23 of 31)	exon (NM_001135190, exon 23 of 31)	-5049	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
219843	chr8	81841101	81844380	+	0	NA	promoter-TSS (NM_152837)	promoter-TSS (NM_152837)	-454	NM_022133	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
157123	chr22	42661871	42662900	+	0	NA	Intergenic	CpG	-12993	NM_000398	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
88904	chr16	87780451	87781480	+	0	NA	Intergenic	AluSz|SINE|Alu	-1817	NR_120309	102724467		NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA
7698	chr1	35942921	35943730	+	0	NA	intron (NM_177422, intron 1 of 16)	AluSx1|SINE|Alu	12220	NM_177422	192669		NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
171962	chr4	901971	902130	+	0	NA	intron (NM_001318134, intron 2 of 24)	AluSz|SINE|Alu	30266	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
15038	chr1	148370251	148370800	+	0	NA	Intergenic	AluSg|SINE|Alu	-7992	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
93572	chr17	19102421	19102880	+	0	NA	Intergenic	Intergenic	9986	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
14943	chr1	147646151	147646850	+	0	NA	TTS (NR_136633)	TTS (NR_136633)	24024	NR_136634	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
220319	chr8	98836321	98836800	+	0	NA	intron (NM_001256312, intron 3 of 12)	LTR41|LTR|ERVL	-10872	NM_006281	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
162115	chr3	46926671	46927630	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	44901	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
44010	chr11	94786571	94786730	+	0	NA	intron (NM_001301007, intron 1 of 11)	intron (NM_001301007, intron 1 of 11)	18294	NM_001301007	154810		NM_130847	ENSG00000166025	AMOTL1	JEAP	angiomotin like 1	protein-coding
168537	chr3	144799171	144799350	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	826179	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
39140	chr11	50175401	50175600	+	0	NA	Intergenic	Intergenic	122962	NR_003034	441601		NR_003034	ENSG00000291108	SEPTIN7P11	-	septin 7 pseudogene 11	pseudo
205275	chr7	8217251	8217690	+	0	NA	intron (NR_146926, intron 6 of 13)	intron (NR_146926, intron 6 of 13)	44697	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
80217	chr16	2165271	2166080	+	0	NA	intron (NM_032271, intron 2 of 20)	CpG	9893	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
59913	chr13	30844001	30844400	+	0	NA	Intergenic	Intergenic	-38362	NR_103813	440132		NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA
232851	chr9	136787401	136788200	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-3544	NM_032928	85014		NM_032928	ENSG00000244187	TMEM141	-	transmembrane protein 141	protein-coding
154825	chr22	37058971	37059430	+	0	NA	intron (NM_001282685, intron 4 of 6)	intron (NM_001282685, intron 4 of 6)	7464	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
142571	chr20	5316551	5316950	+	0	NA	5' UTR (NM_144773, exon 1 of 3)	5' UTR (NM_144773, exon 1 of 3)	204	NM_144773	128674		NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
92597	chr17	9546301	9546680	+	0	NA	intron (NM_004853, intron 3 of 7)	intron (NM_004853, intron 3 of 7)	29330	NM_004853	9482		NM_004853	ENSG00000170310	STX8	CARB	syntaxin 8	protein-coding
60468	chr13	41128771	41128930	+	0	NA	3' UTR (NM_152903, exon 1 of 1)	3' UTR (NM_152903, exon 1 of 1)	3952	NM_152903	89890		NM_152903	ENSG00000165572	KBTBD6	-	kelch repeat and BTB domain containing 6	protein-coding
79928	chr16	1737371	1738150	+	0	NA	intron (NM_015133, intron 4 of 31)	intron (NM_015133, intron 4 of 31)	2775	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
187821	chr5	146792651	146792950	+	0	NA	intron (NM_001271899, intron 2 of 9)	L2a|LINE|L2	85957	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
191530	chr6	11381651	11382780	+	0	NA	non-coding (NR_073131, exon 1 of 10)	non-coding (NR_073131, exon 1 of 10)	133	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
145254	chr20	39025851	39026250	+	0	NA	intron (NM_001190809, intron 17 of 20)	MIRb|SINE|MIR	63706	NR_033905	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
60100	chr13	36818801	36820380	+	0	NA	exon (NM_000538, exon 1 of 3)	exon (NM_000538, exon 1 of 3)	368	NM_000538	5994		NM_000538	ENSG00000133111	RFXAP	-	regulatory factor X associated protein	protein-coding
105451	chr17	82985021	82985280	+	0	NA	intron (NR_135465, intron 6 of 13)	intron (NR_135465, intron 6 of 13)	21838	NR_135466	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
49437	chr12	24795651	24796280	+	0	NA	Intergenic	Intergenic	106257	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
27774	chr10	35368471	35369130	+	0	NA	intron (NM_001282852, intron 1 of 8)	intron (NM_001282852, intron 1 of 8)	31926	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
23576	chr1	229507801	229509130	+	0	NA	promoter-TSS (NR_110630)	promoter-TSS (NR_110630)	35	NR_110630	101927478		NR_110630		NUP133-DT	-	NUP133 divergent transcript	ncRNA
94887	chr17	31536751	31537330	+	0	NA	3' UTR (NM_001346747, exon 12 of 12)	3' UTR (NM_001346747, exon 12 of 12)	2157	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
32678	chr10	103915071	103915230	+	0	NA	intron (NM_024928, intron 2 of 9)	MER21C|LTR|ERVL	3034	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
196722	chr6	45116851	45116950	+	0	NA	intron (NM_001350329, intron 2 of 10)	L1MB7|LINE|L1	80870	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
184747	chr5	109753851	109754150	+	0	NA	intron (NM_002372, intron 4 of 21)	AluJr|SINE|Alu	64634	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
51084	chr12	49960671	49962250	+	0	NA	promoter-TSS (NM_001651)	promoter-TSS (NM_001651)	-412	NM_001651	362		NM_001651	ENSG00000161798	AQP5	AQP-5|PPKB	aquaporin 5	protein-coding
169088	chr3	154310871	154311030	+	0	NA	intron (NM_020865, intron 4 of 24)	intron (NM_020865, intron 4 of 24)	13537	NM_020865	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
10043	chr1	58545551	58547030	+	0	NA	intron (NM_145243, intron 1 of 8)	CpG	436	NM_001379461	1600		NM_021080	ENSG00000173406	DAB1	SCA37	DAB adaptor protein 1	protein-coding
27615	chr10	32923851	32924550	+	0	NA	intron (NM_133376, intron 6 of 15)	intron (NM_133376, intron 6 of 15)	11358	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
40910	chr11	65184501	65184900	+	0	NA	intron (NM_001198868, intron 4 of 21)	intron (NM_001198868, intron 4 of 21)	2772	NM_005186	823		NM_005186	ENSG00000014216	CAPN1	CANP|CANP1|CANPL1|SPG76|muCANP|muCL	calpain 1	protein-coding
122285	chr19	49083251	49083880	+	0	NA	Intergenic	AluSx|SINE|Alu	-1886	NM_003089	6625		NM_003089	ENSG00000104852	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein U1 subunit 70	protein-coding
152570	chr22	21115221	21115850	+	0	NA	intron (NR_037566, intron 1 of 5)	intron (NR_037566, intron 1 of 5)	12519	NR_037566	400892		NM_207474	ENSG00000291044	BCRP2	BCR-2|BCR2|BCRL2	BCR pseudogene 2	pseudo
16341	chr1	154271151	154271250	+	0	NA	TTS (NM_001375621)	TTS (NM_001375621)	-1429	NM_001018837	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
110476	chr19	2024951	2025450	+	0	NA	Intergenic	AluY|SINE|Alu	-9486	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
72837	chr15	40135221	40135830	+	0	NA	Intergenic	Intergenic	-25544	NM_001211	701		NM_001211	ENSG00000156970	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
73357	chr15	42271401	42271600	+	0	NA	intron (NM_001286487, intron 1 of 18)	Tigger3a|DNA|TcMar-Tigger	1933	NM_015497	25963		NM_015497	ENSG00000103978	TMEM87A	ELKIN1	transmembrane protein 87A	protein-coding
42536	chr11	71530751	71530850	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	3533	NM_001012503	440050		NM_001012503	ENSG00000244411	KRTAP5-7	KRTAP5-3|KRTAP5.7	keratin associated protein 5-7	protein-coding
41132	chr11	65576931	65578330	+	0	NA	intron (NM_001099409, intron 1 of 18)	intron (NM_001099409, intron 1 of 18)	1577	NM_001099409	254102		NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1 like 1	protein-coding
213659	chr7	139827171	139827330	+	0	NA	intron (NM_001166254, intron 3 of 14)	intron (NM_001166254, intron 3 of 14)	-2014	NM_030984	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
120853	chr19	45522401	45522800	+	0	NA	intron (NM_003370, intron 6 of 12)	intron (NM_003370, intron 6 of 12)	15121	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
143993	chr20	32974321	32974880	+	0	NA	Intergenic	MIRb|SINE|MIR	29833	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
140688	chr2	234259801	234260000	+	0	NA	Intergenic	(CTCAGC)n|Simple_repeat|Simple_repeat	194695	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
112835	chr19	7530171	7530330	+	0	NA	intron (NM_020533, intron 11 of 13)	intron (NM_020533, intron 11 of 13)	-3914	NM_006702	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
208369	chr7	66634371	66634530	+	0	NA	intron (NM_153033, intron 2 of 3)	FAM|SINE|Alu	5569	NM_153033	154881		NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
123567	chr19	54446971	54447130	+	0	NA	intron (NR_126418, intron 2 of 2)	intron (NR_126418, intron 2 of 2)	1988	NR_126418	104355426		NR_126418	ENSG00000226696	LENG8-AS1	-	LENG8 antisense RNA 1	ncRNA
138367	chr2	203948751	203949600	+	0	NA	intron (NM_012092, intron 1 of 4)	L2a|LINE|L2	12412	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
227878	chr9	93826371	93826730	+	0	NA	Intergenic	CpG	7193	NR_036254	100422927		NR_036254	ENSG00000265347	MIR4291	-	microRNA 4291	ncRNA
185955	chr5	133033221	133033830	+	0	NA	Intergenic	Intergenic	-6976	NM_001300819	54819		NM_017665	ENSG00000155329	ZCCHC10	-	zinc finger CCHC-type containing 10	protein-coding
22797	chr1	224456921	224457980	+	0	NA	intron (NM_001322302, intron 2 of 6)	intron (NM_001322302, intron 2 of 6)	22601	NR_136293	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
188413	chr5	154157501	154157700	+	0	NA	Intergenic	Intergenic	-33133	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
110765	chr19	2389071	2389230	+	0	NA	intron (NM_182973, intron 1 of 17)	AluSx1|SINE|Alu	3885	NM_182973	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
206920	chr7	38218751	38219300	+	0	NA	intron (NM_032016, intron 6 of 8)	intron (NM_032016, intron 6 of 8)	40780	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
46240	chr11	124716651	124717030	+	0	NA	Intergenic	Intergenic	-23102	NM_006176	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
140415	chr2	233105071	233105900	+	0	NA	intron (NM_001017915, intron 2 of 26).2	L2b|LINE|L2	45143	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
222426	chr8	134687201	134688100	+	0	NA	intron (NM_001289394, intron 1 of 16)	intron (NM_001289394, intron 1 of 16)	8905	NM_001029939	57623		NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
233028	chr9	137030201	137031180	+	0	NA	3' UTR (NM_004479, exon 2 of 2)	3' UTR (NM_004479, exon 2 of 2)	1398	NM_004479	2529		NM_004479	ENSG00000180549	FUT7	FucT-VII	fucosyltransferase 7	protein-coding
107785	chr18	51110301	51111080	+	0	NA	Intergenic	Intergenic	80477	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
213909	chr7	142504151	142504250	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	29673	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
99496	chr17	50193601	50193800	+	0	NA	intron (NM_000088, intron 25 of 50)	AluSx3|SINE|Alu	7931	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
97574	chr17	44095371	44095530	+	0	NA	intron (NM_001382393, intron 3 of 26)	intron (NM_001382393, intron 3 of 26)	-20462	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
67830	chr14	73882971	73883430	+	0	NA	intron (NM_001371327, intron 8 of 8)	AluJr4|SINE|Alu	-3659	NM_001242926	57862		NM_021188	ENSG00000119725	ZNF410	APA-1|APA1	zinc finger protein 410	protein-coding
93776	chr17	20249901	20250100	+	0	NA	intron (NM_001033555, intron 7 of 12)	L1MEg|LINE|L1	-71174	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
181483	chr5	42950411	42953580	+	0	NA	Intergenic	CpG	41338	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
74609	chr15	60588921	60590130	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	3001	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
185605	chr5	131418551	131418650	+	0	NA	Intergenic	AluSc8|SINE|Alu	154547	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
155163	chr22	37684701	37684930	+	0	NA	Intergenic	AluSp|SINE|Alu	-1528	NM_024313	79159		NM_024313	ENSG00000273899	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
123710	chr19	55034001	55034200	+	0	NA	intron (NM_001083899, intron 1 of 7).8	intron (NM_001083899, intron 1 of 7).8	4164	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
6332	chr1	27671901	27673330	+	0	NA	promoter-TSS (NM_002038)	promoter-TSS (NM_002038)	-423	NM_022872	2537		NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon alpha inducible protein 6	protein-coding
50314	chr12	46523801	46524550	+	0	NA	intron (NR_125380, intron 3 of 3)	intron (NR_125380, intron 3 of 3)	140068	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
185861	chr5	132520771	132520930	+	0	NA	Intergenic	AluSq2|SINE|Alu	22672	NM_000879	3567		NM_000879	ENSG00000113525	IL5	EDF|IL-5|TRF	interleukin 5	protein-coding
109688	chr19	1042251	1043380	+	0	NA	exon (NM_019112, exon 7 of 47)	exon (NM_019112, exon 7 of 47)	2708	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
186006	chr5	133935621	133936550	+	0	NA	Intergenic	Intergenic	22408	NR_131252	105664404		NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
237615	chrX	123990001	123991130	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	28859	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
129020	chr2	64880151	64880250	+	0	NA	Intergenic	Intergenic	-16569	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
66195	chr14	61120601	61120800	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-139010	NM_001350253	57570		NM_020810	ENSG00000126814	TRMT5	COXPD26|KIAA1393|PNSED|TRM5	tRNA methyltransferase 5	protein-coding
130236	chr2	84832101	84832300	+	0	NA	intron (NM_001080824, intron 3 of 5)	intron (NM_001080824, intron 3 of 5)	48884	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
109415	chr19	687751	688050	+	0	NA	intron (NM_214710, intron 3 of 4)	L2b|LINE|L2	7552	NM_001308209	400668		NM_214710	ENSG00000185198	PRSS57	NSP4|PRSSL1|UNQ782	serine protease 57	protein-coding
29492	chr10	70591171	70591730	+	0	NA	Intergenic	Intergenic	11291	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
196526	chr6	43812221	43812480	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	39983	NR_149142	285857		NR_149142	ENSG00000283215	LINC02537	-	long intergenic non-protein coding RNA 2537	ncRNA
86947	chr16	68113821	68114280	+	0	NA	intron (NM_173165, intron 1 of 9)	L1PA10|LINE|L1	28680	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
170964	chr3	194485101	194485620	+	0	NA	intron (NR_164666, intron 2 of 32)	intron (NR_164666, intron 2 of 32)	1642	NM_001367549	79572		NM_024524	ENSG00000133657	ATP13A3	AFURS1|PPH5	ATPase 13A3	protein-coding
18275	chr1	161113521	161113980	+	0	NA	intron (NM_012394, intron 1 of 3)	AluJb|SINE|Alu	4287	NM_012394	5202		NM_012394	ENSG00000143256	PFDN2	PFD2	prefoldin subunit 2	protein-coding
66408	chr14	61510371	61510530	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	59744	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
237488	chrX	119874201	119874400	+	0	NA	intron (NM_004541, intron 2 of 2)	AluJo|SINE|Alu	2468	NM_004541	4694		NM_004541	ENSG00000125356	NDUFA1	CI-MWFE|MC1DN12|MWFE|ZNF183	NADH:ubiquinone oxidoreductase subunit A1	protein-coding
232300	chr9	134466121	134466530	+	0	NA	Intergenic	CpG	59765	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
23772	chr1	233241151	233241250	+	0	NA	intron (NM_014801, intron 8 of 33)	intron (NM_014801, intron 8 of 33)	54525	NM_001328607	80003		NM_014801	ENSG00000135749	PCNX2	PCNXL2	pecanex 2	protein-coding
113002	chr19	7905451	7905830	+	0	NA	intron (NM_145185, intron 1 of 10)	intron (NM_145185, intron 1 of 10)	1763	NM_145185	5609		NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
72014	chr15	28085801	28086600	+	0	NA	intron (NM_000275, intron 1 of 23)	L1MDa|LINE|L1	13115	NM_000275	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
115738	chr19	16265071	16265680	+	0	NA	Intergenic	L2a|LINE|L2	-59451	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
66160	chr14	60485471	60486050	+	0	NA	intron (NM_174978, intron 1 of 17)	CpG	303	NM_174978	317761		NM_174978	ENSG00000179008	C14orf39	POF18|SPGF52|Six6os1	chromosome 14 open reading frame 39	protein-coding
15255	chr1	149629171	149630080	+	0	NA	intron (NR_111950, intron 1 of 8)	LTR24C|LTR|ERV1	22613	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
28366	chr10	47217121	47217380	+	0	NA	Intergenic	L1MEd|LINE|L1	-82947	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
83294	chr16	24149251	24149550	+	0	NA	intron (NM_212535, intron 9 of 16)	intron (NM_212535, intron 9 of 16)	-53716	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
224254	chr9	5947821	5948330	+	0	NA	intron (NM_001017969, intron 4 of 7)	intron (NM_001017969, intron 4 of 7)	57186	NM_005511	2315		NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
214201	chr7	148628351	148629480	+	0	NA	Intergenic	Intergenic	38149	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
70963	chr14	104692671	104692830	+	0	NA	intron (NM_032714, intron 1 of 4)	intron (NM_032714, intron 1 of 4)	3132	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
69423	chr14	94073171	94073480	+	0	NA	intron (NM_020414, intron 2 of 8).2	AluSz6|SINE|Alu	7877	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
176676	chr4	100532921	100533180	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-15028	NM_016242	51705		NM_016242	ENSG00000164035	EMCN	EMCN2|MUC14	endomucin	protein-coding
49089	chr12	14453401	14453600	+	0	NA	intron (NM_181352, intron 6 of 14)	L1M4|LINE|L1	68219	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
69375	chr14	94028421	94029100	+	0	NA	intron (NM_023112, intron 1 of 5)	L2c|LINE|L2	2420	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
39017	chr11	47747201	47747400	+	0	NA	intron (NM_015308, intron 6 of 16)	AluSq2|SINE|Alu	20041	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
223734	chr8	144478921	144479700	+	0	NA	intron (NM_032902, intron 2 of 12)	intron (NM_032902, intron 2 of 12)	959	NM_001329444	84988		NM_032902	ENSG00000160972	PPP1R16A	MYPT3	protein phosphatase 1 regulatory subunit 16A	protein-coding
44147	chr11	96165601	96165980	+	0	NA	intron (NM_032427, intron 1 of 4)	L1ME4a|LINE|L1	-175648	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
38592	chr11	46277371	46277900	+	0	NA	promoter-TSS (NM_052854)	promoter-TSS (NM_052854)	-27	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
199149	chr6	111726551	111727180	+	0	NA	intron (NM_002037, intron 3 of 13)	THE1D|LTR|ERVL-MaLR	32266	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
84418	chr16	30367451	30367950	+	0	NA	intron (NM_015527, intron 1 of 8)	L2c|LINE|L2	2794	NM_015527	26000		NM_015527	ENSG00000169221	TBC1D10B	EPI64B|FP2461	TBC1 domain family member 10B	protein-coding
101269	chr17	66339671	66340050	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	37247	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
82975	chr16	21954451	21954550	+	0	NA	intron (NM_003366, intron 1 of 13)	intron (NM_003366, intron 1 of 13)	1139	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
231267	chr9	130007301	130009180	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluJb|SINE|Alu	34949	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
43262	chr11	75564101	75564680	+	0	NA	intron (NM_001207014, intron 2 of 5)	intron (NM_001207014, intron 2 of 5)	2137	NM_001235	871		NM_001235	ENSG00000149257	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46	serpin family H member 1	protein-coding
16649	chr1	155139621	155140980	+	0	NA	exon (NM_018973, exon 1 of 1)	exon (NM_018973, exon 1 of 1)	107	NM_018973	54344		NM_018973	ENSG00000179085	DPM3	CDG1O|MDDGB15|MDDGC15	dolichyl-phosphate mannosyltransferase subunit 3, regulatory	protein-coding
132011	chr2	100630401	100630800	+	0	NA	Intergenic	Intergenic	26861	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
199092	chr6	111666421	111666880	+	0	NA	intron (NM_001370529, intron 11 of 11)	AluJb|SINE|Alu	-60376	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
80709	chr16	3076271	3076430	+	0	NA	Intergenic	AluJb|SINE|Alu	10566	NM_001012636	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
71578	chr14	106469851	106470480	+	0	NA	Intergenic	Intergenic	-12274	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
38261	chr11	36622771	36623000	+	0	NA	intron (NM_001276725, intron 2 of 3)	(TGTATAG)n|Simple_repeat|Simple_repeat	-24606	NM_001243786	5897		NM_000536	ENSG00000175097	RAG2	RAG-2	recombination activating 2	protein-coding
34430	chr10	132414101	132414300	+	0	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	17000	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
145817	chr20	45470121	45471280	+	0	NA	intron (NM_006103, intron 2 of 3)	CpG-17783	947	NM_006103	10406		NM_006103	ENSG00000101443	WFDC2	EDDM4|HE4|WAP5|dJ461P17.6	WAP four-disulfide core domain 2	protein-coding
121987	chr19	48507701	48508300	+	0	NA	intron (NM_001080434, intron 6 of 15)	L2a|LINE|L2	5189	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
131064	chr2	88629751	88629850	+	0	NA	intron (NR_135540, intron 1 of 1)	L2a|LINE|L2	1971	NR_135540	101928403		NR_135540	ENSG00000234028	EIF2AK3-DT	-	EIF2AK3 divergent transcript	ncRNA
208063	chr7	56080521	56081050	+	0	NA	TTS (NM_015411)	TTS (NM_015411)	12167	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
98362	chr17	46361321	46362480	+	0	NA	promoter-TSS (NM_001113738)	promoter-TSS (NM_001113738)	-103	NM_001330244	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
74063	chr15	52564971	52566230	+	0	NA	intron (NM_001306191, intron 3 of 5)	Charlie29a|DNA|hAT-Charlie	3232	NM_001330309	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
223633	chr8	144331621	144332290	+	0	NA	3' UTR (NM_031309, exon 2 of 2)	3' UTR (NM_031309, exon 2 of 2)	4527	NM_031309	83482		NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding
110839	chr19	2533651	2534050	+	0	NA	intron (NM_052847, intron 3 of 4)	intron (NM_052847, intron 3 of 4)	57723	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
64267	chr14	23300901	23303880	+	0	NA	exon (NM_001276318, exon 1 of 5)	exon (NM_001276318, exon 1 of 5)	469	NM_001276318	90673		NM_001276318	ENSG00000235194	PPP1R3E	-	protein phosphatase 1 regulatory subunit 3E	protein-coding
27930	chr10	41914671	41915300	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	453060	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
111106	chr19	3205971	3206530	+	0	NA	intron (NM_001321463, intron 11 of 14)	intron (NM_001321463, intron 11 of 14)	-18411	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
104581	chr17	81388321	81388580	+	0	NA	Intergenic	Intergenic	-3068	NR_164137	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
40635	chr11	64719501	64719780	+	0	NA	intron (NM_015080, intron 1 of 22)	intron (NM_015080, intron 1 of 22)	3557	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
214080	chr7	143437521	143437780	+	0	NA	intron (NR_033897, intron 2 of 4)	intron (NR_033897, intron 2 of 4)	-5803	NM_177437	338398		NM_177437	ENSG00000185899	TAS2R60	T2R56|T2R60	taste 2 receptor member 60	protein-coding
58236	chr12	128693101	128693700	+	0	NA	intron (NM_001136103, intron 5 of 8)	LTR16E1|LTR|ERVL	130558	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
211600	chr7	105850721	105851400	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	25525	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
174473	chr4	39816371	39816530	+	0	NA	Intergenic	L1MB7|LINE|L1	118314	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
142419	chr20	3896621	3897000	+	0	NA	intron (NM_001324191, intron 2 of 7)	MER21B|LTR|ERVL	6994	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
103248	chr17	77535571	77535930	+	0	NA	intron (NR_148967, intron 2 of 2)	intron (NR_148967, intron 2 of 2)	8749	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
175075	chr4	54066801	54067150	+	0	NA	Intergenic	Intergenic	-2370	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
112769	chr19	7449601	7449880	+	0	NA	intron (NM_001367823, intron 15 of 28)	AluJr|SINE|Alu	10052	NM_001130955	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
167554	chr3	129369771	129370330	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	27298	NR_002992	677797		NR_002992	ENSG00000207088	SNORA7B	ACA7B	small nucleolar RNA, H/ACA box 7B	snoRNA
4966	chr1	24150351	24151280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7675	NM_021258	58985		NM_021258	ENSG00000142677	IL22RA1	CRF2-9|IL22R|IL22R1	interleukin 22 receptor subunit alpha 1	protein-coding
128917	chr2	64322921	64323180	+	0	NA	Intergenic	MIRc|SINE|MIR	-17709	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
124057	chr19	55592671	55593480	+	0	NA	exon (NM_032836, exon 3 of 3)	exon (NM_032836, exon 3 of 3)	6442	NM_032836	84922		NM_032836	ENSG00000179943	FIZ1	ZNF798	FLT3 interacting zinc finger 1	protein-coding
39834	chr11	62124701	62125680	+	0	NA	intron (NM_001040694, intron 1 of 18)	intron (NM_001040694, intron 1 of 18)	1179	NM_001040694	3619		NM_020238	ENSG00000149503	INCENP	-	inner centromere protein	protein-coding
18622	chr1	165924701	165924980	+	0	NA	Intergenic	Intergenic	16919	NR_037431	100500832		NR_037431	ENSG00000283936	MIR3658	-	microRNA 3658	ncRNA
207111	chr7	41881501	41882330	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-178825	NM_002192	3624		NM_002192	ENSG00000122641	INHBA	EDF|FRP	inhibin subunit beta A	protein-coding
63142	chr13	113557671	113557900	+	0	NA	Intergenic	MER54B|LTR|ERVL	-26903	NR_026580	7027		NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
114337	chr19	12156001	12157300	+	0	NA	promoter-TSS (NR_037801)	promoter-TSS (NR_037801)	81	NR_037802	100529855		NR_037802		ZNF625-ZNF20	-	ZNF625-ZNF20 readthrough (NMD candidate)	ncRNA
135295	chr2	160220521	160220780	+	0	NA	Intergenic	LTR50|LTR|ERVL	-20337	NM_001282354	3694		NM_000888	ENSG00000115221	ITGB6	AI1H	integrin subunit beta 6	protein-coding
173786	chr4	17603871	17604030	+	0	NA	intron (NM_015907, intron 10 of 12)	AluSx1|SINE|Alu	-10691	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
211950	chr7	112480321	112481530	+	0	NA	promoter-TSS (NM_182597)	promoter-TSS (NM_182597)	-66	NM_182597	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
54806	chr12	94621451	94622150	+	0	NA	intron (NM_020698, intron 1 of 3)	intron (NM_020698, intron 1 of 3)	-5799	NM_001301036	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
43591	chr11	83122471	83123050	+	0	NA	Intergenic	Intergenic	-34371	NM_001346414	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
872	chr1	1627271	1628060	+	0	NA	intron (NM_080875, intron 12 of 19)	CpG-125	-4508	NM_006983	8510		NM_006983	ENSG00000189409	MMP23B	MIFR|MIFR-1|MMP22|MMP23A	matrix metallopeptidase 23B	protein-coding
227907	chr9	94164801	94165150	+	0	NA	Intergenic	Intergenic	-10982	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
109293	chr19	555821	556550	+	0	NA	Intergenic	Intergenic	12132	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
6309	chr1	27632541	27633350	+	0	NA	intron (NM_005248, intron 1 of 12)	intron (NM_005248, intron 1 of 12)	2240	NM_005248	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
153058	chr22	23284421	23284680	+	0	NA	intron (NM_021574, intron 9 of 21)	MIR3|SINE|MIR	21783	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
146564	chr20	50023171	50023330	+	0	NA	Intergenic	Intergenic	18379	NR_051976	100887755		NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
200166	chr6	130561251	130561350	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	124183	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
145311	chr20	41061301	41061500	+	0	NA	exon (NM_003286, exon 3 of 21)	exon (NM_003286, exon 3 of 21)	32578	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
33923	chr10	124604221	124604480	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-99678	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
184768	chr5	110096521	110096980	+	0	NA	Intergenic	Intergenic	213568	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
159805	chr3	16337571	16338650	+	0	NA	non-coding (NR_148220, exon 11 of 11)	non-coding (NR_148220, exon 11 of 11)	72898	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
217186	chr8	26316621	26317150	+	0	NA	intron (NM_002717, intron 2 of 9)	MLT1A0|LTR|ERVL-MaLR	23669	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
108101	chr18	61972121	61973330	+	0	NA	Intergenic	Intergenic	-79718	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
100660	chr17	63708551	63708650	+	0	NA	intron (NM_001165970, intron 6 of 10)	AluSx1|SINE|Alu	8262	NR_046273	729683		NR_046273		LOC729683	-	uncharacterized LOC729683	ncRNA
122102	chr19	48755021	48755580	+	0	NA	promoter-TSS (NM_000148)	promoter-TSS (NM_000148)	58	NM_000148	2523		NM_000148	ENSG00000174951	FUT1	H|HH|HSC	fucosyltransferase 1 (H blood group)	protein-coding
229459	chr9	121708051	121708350	+	0	NA	intron (NM_032552, intron 3 of 16)	MIRb|SINE|MIR	-34585	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
33892	chr10	124469671	124470230	+	0	NA	intron (NM_001167880, intron 1 of 5)	L2a|LINE|L2	8127	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
117680	chr19	24117351	24117450	+	0	NA	intron (NM_001278677, intron 5 of 5)	L1P1|LINE|L1	30213	NM_203282	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
173264	chr4	7046751	7047980	+	0	NA	intron (NM_152293, intron 1 of 1)	intron (NM_152293, intron 1 of 1)	-1134	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
227657	chr9	92970421	92970700	+	0	NA	intron (NM_001369951, intron 1 of 17)	LTR56|LTR|ERV1	-3876	NM_033086	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
114831	chr19	13823471	13824380	+	0	NA	intron (NM_023072, intron 10 of 12)	MLT1B|LTR|ERVL-MaLR	12434	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
40412	chr11	64145701	64146600	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	19963	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
197256	chr6	70409971	70410130	+	0	NA	Intergenic	AluSg|SINE|Alu	-3354	NM_001331006	57579		NM_020819	ENSG00000082269	FAM135A	KIAA1411	family with sequence similarity 135 member A	protein-coding
170132	chr3	183349201	183349670	+	0	NA	intron (NM_015078, intron 3 of 29)	L1M5|LINE|L1	78834	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
155310	chr22	38197171	38197930	+	0	NA	Intergenic	AluSz|SINE|Alu	-4382	NM_001161572	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
115390	chr19	15263071	15263230	+	0	NA	intron (NM_001379291, intron 7 of 19)	intron (NM_001379291, intron 7 of 19)	17301	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
133936	chr2	130527571	130527930	+	0	NA	exon (NM_001079530, exon 6 of 6)	exon (NM_001079530, exon 6 of 6)	6528	NM_001079530	653275		NM_001079530	ENSG00000152093	CFC1B	-	cryptic, EGF-CFC family member 1B	protein-coding
67183	chr14	68823201	68823400	+	0	NA	Intergenic	MIRb|SINE|MIR	-27057	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
206452	chr7	32886921	32887180	+	0	NA	intron (NM_015483, intron 1 of 3)	intron (NM_015483, intron 1 of 3)	4710	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
162754	chr3	49058401	49058600	+	0	NA	intron (NM_001320580, intron 3 of 10)	AluSz|SINE|Alu	-29102	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
114516	chr19	12799601	12800400	+	0	NA	intron (NM_005809, intron 4 of 5)	intron (NM_005809, intron 4 of 5)	1800	NM_005809	7001		NM_005809	ENSG00000167815	PRDX2	HEL-S-2a|NKEF-B|NKEFB|PRP|PRX2|PRXII|PTX1|TDPX1|TPX1|TSA	peroxiredoxin 2	protein-coding
154596	chr22	36286371	36287530	+	0	NA	promoter-TSS (NR_106877)	promoter-TSS (NR_106877)	-43	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
8363	chr1	40313521	40313780	+	0	NA	intron (NM_001852, intron 4 of 31)	intron (NM_001852, intron 4 of 31)	3636	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
100589	chr17	63434001	63434300	+	0	NA	3' UTR (NM_001915, exon 6 of 6)	3' UTR (NM_001915, exon 6 of 6)	6117	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
216818	chr8	22571351	22571650	+	0	NA	intron (NM_005775, intron 18 of 20)	MIRc|SINE|MIR	5771	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
230587	chr9	128563851	128564530	+	0	NA	intron (NM_001375312, intron 2 of 57)	AluSg4|SINE|Alu	11603	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
168425	chr3	142447331	142448680	+	0	NA	promoter-TSS (NM_001282857)	promoter-TSS (NM_001282857)	32	NM_019001	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
21691	chr1	206726201	206727030	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	41710	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
25699	chr10	8951501	8952100	+	0	NA	Intergenic	MIRb|SINE|MIR	53811	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
117569	chr19	21350721	21350980	+	0	NA	Intergenic	L1PB1|LINE|L1	-8080	NM_001355240	148203		NM_001355237	ENSG00000172687	ZNF738	-	zinc finger protein 738	protein-coding
161628	chr3	43290951	43291930	+	0	NA	intron (NM_001330750, intron 1 of 4)	intron (NM_001330750, intron 1 of 4)	4900	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
89454	chr16	89016921	89017400	+	0	NA	Intergenic	Intergenic	-39953	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
67728	chr14	73507701	73507900	+	0	NA	intron (NM_203309, intron 8 of 16)	AluSz|SINE|Alu	16867	NM_024644	79697		NM_024644	ENSG00000170468	RIOX1	C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66	ribosomal oxygenase 1	protein-coding
140293	chr2	232381321	232381780	+	0	NA	exon (NM_001632, exon 11 of 11)	exon (NM_001632, exon 11 of 11)	2799	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
15614	chr1	150616671	150616830	+	0	NA	Intergenic	Intergenic	12383	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
162903	chr3	49402071	49402680	+	0	NA	intron (NM_001313943, intron 1 of 5)	intron (NM_001313943, intron 1 of 5)	9601	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
62519	chr13	99506651	99506750	+	0	NA	intron (NM_004800, intron 1 of 16)	intron (NM_004800, intron 1 of 16)	5228	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
99285	chr17	49760801	49761400	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	3031	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
15775	chr1	151188421	151188800	+	0	NA	intron (NM_001271087, intron 1 of 5)	L2c|LINE|L2	1587	NM_001271088	6944		NM_005997	ENSG00000163159	VPS72	CFL1|Swc2|TCFL1|YL-1|YL1	vacuolar protein sorting 72 homolog	protein-coding
48198	chr12	8064371	8064730	+	0	NA	intron (NM_004054, intron 1 of 1)	AluSp|SINE|Alu	1809	NM_001326475	719		NM_004054	ENSG00000171860	C3AR1	AZ3B|C3AR|HNFAG09	complement C3a receptor 1	protein-coding
149660	chr21	33557521	33557780	+	0	NA	3' UTR (NM_001291411, exon 5 of 5)	3' UTR (NM_001291411, exon 5 of 5)	6988	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
44349	chr11	102430421	102431080	+	0	NA	intron (NM_052932, intron 2 of 4)	MIR|SINE|MIR	22015	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
159661	chr3	15356571	15357280	+	0	NA	Intergenic	AluSp|SINE|Alu	-15545	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
8894	chr1	43878701	43879100	+	0	NA	intron (NM_001350621, intron 6 of 13)	L2a|LINE|L2	40278	NR_106727	102464830		NR_106727	ENSG00000283477	MIR6079	hsa-mir-6079	microRNA 6079	ncRNA
45376	chr11	118307551	118308480	+	0	NA	intron (NM_000733, intron 3 of 8)	AluSz|SINE|Alu	3285	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
210209	chr7	99140951	99141660	+	0	NA	intron (NM_181349, intron 1 of 17)	intron (NM_181349, intron 1 of 17)	2803	NM_181349	57154		NM_020429	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
162653	chr3	48896851	48897280	+	0	NA	intron (NM_000387, intron 1 of 8)	(T)n|Simple_repeat|Simple_repeat	1817	NM_000387	788		NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	solute carrier family 25 member 20	protein-coding
84850	chr16	31133621	31133880	+	0	NA	intron (NM_002773, intron 2 of 5)	intron (NM_002773, intron 2 of 5)	1977	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
178328	chr4	145722651	145722850	+	0	NA	intron (NM_001080531, intron 2 of 5)	MER1A|DNA|hAT-Charlie	42604	NM_001080531	646603		NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
48891	chr12	12505601	12506400	+	0	NA	intron (NM_030640, intron 3 of 6)	intron (NM_030640, intron 3 of 6)	56863	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
89232	chr16	88633121	88634500	+	0	NA	Intergenic	Intergenic	-4762	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
48405	chr12	9656851	9657150	+	0	NA	non-coding (NR_046450, exon 5 of 5)	non-coding (NR_046450, exon 5 of 5)	8953	NR_002814	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
94688	chr17	30646871	30647030	+	0	NA	Intergenic	Intergenic	22632	NR_033420	6459		NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2	pseudo
32877	chr10	110115671	110116030	+	0	NA	intron (NM_016824, intron 3 of 14)	intron (NM_016824, intron 3 of 14)	36130	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
198551	chr6	106567951	106568700	+	0	NA	intron (NM_001371242, intron 21 of 21)	intron (NM_001371242, intron 21 of 21)	56470	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
149589	chr21	33268051	33268350	+	0	NA	intron (NM_000628, intron 1 of 6)	intron (NM_000628, intron 1 of 6)	1833	NM_000628	3588		NM_000628	ENSG00000243646	IL10RB	CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IBD25|IL-10R2|IL-10RB	interleukin 10 receptor subunit beta	protein-coding
188295	chr5	151149721	151151100	+	0	NA	intron (NM_001363114, intron 1 of 24)	MIRb|SINE|MIR	7369	NM_001155	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
4791	chr1	23567001	23567480	+	0	NA	Intergenic	AluSx|SINE|Alu	-7739	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
54281	chr12	89231851	89231950	+	0	NA	Intergenic	MIRb|SINE|MIR	120601	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
47497	chr12	3995771	3996300	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-122587	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
48356	chr12	9415601	9415800	+	0	NA	Intergenic	Intergenic	-8286	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
138955	chr2	218258871	218260080	+	0	NA	promoter-TSS (NM_001321950)	promoter-TSS (NM_001321950)	-21	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
134015	chr2	131036101	131036300	+	0	NA	intron (NM_001375904, intron 2 of 10)	intron (NM_001375904, intron 2 of 10)	56962	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
79874	chr16	1529201	1529400	+	0	NA	intron (NM_001256541, intron 1 of 3)	intron (NM_001256541, intron 1 of 3)	622	NM_001256541	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
23434	chr1	228409701	228410450	+	0	NA	intron (NM_001134855, intron 4 of 5)	intron (NM_001134855, intron 4 of 5)	-3240	NM_145214	81559		NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
135413	chr2	161104201	161104400	+	0	NA	Intergenic	Intergenic	-32655	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
132884	chr2	111250671	111250830	+	0	NA	intron (NR_136161, intron 3 of 5)	intron (NR_136161, intron 3 of 5)	70336	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
185367	chr5	127568271	127568430	+	0	NA	Intergenic	Intergenic	50710	NM_001286808	133619		NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
212205	chr7	118186501	118186700	+	0	NA	intron (NM_016200, intron 2 of 3)	MIRb|SINE|MIR	2436	NM_016200	51691		NM_016200	ENSG00000128534	LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding
23252	chr1	227816821	227817330	+	0	NA	intron (NM_183062, intron 2 of 4)	intron (NM_183062, intron 2 of 4)	1358	NM_183062	339501		NM_183062	ENSG00000185888	PRSS38	MPN2	serine protease 38	protein-coding
81510	chr16	8965551	8965900	+	0	NA	Intergenic	AluSx|SINE|Alu	-1819	NM_003470	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
6710	chr1	29232271	29232430	+	0	NA	Intergenic	MIRb|SINE|MIR	-1416	NM_001349714	51102		NM_016011	ENSG00000116353	MECR	CGI-63|DYTOABG|ETR1|FASN2B|NRBF1|OPA16	mitochondrial trans-2-enoyl-CoA reductase	protein-coding
10084	chr1	58841471	58841700	+	0	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	56434	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
51043	chr12	49776221	49776700	+	0	NA	Intergenic	Intergenic	34651	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
1224	chr1	2271671	2272650	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	43841	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
100948	chr17	64487371	64487950	+	0	NA	intron (NM_007215, intron 4 of 7)	Tigger14a|DNA|TcMar-Tigger	9394	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
166224	chr3	112111451	112112180	+	0	NA	promoter-TSS (NR_030292)	promoter-TSS (NR_030292)	-986	NR_030292	693152		NR_030292	ENSG00000207940	MIR567	MIRN567|hsa-mir-567	microRNA 567	ncRNA
131408	chr2	96278621	96279180	+	0	NA	exon (NM_014014, exon 37 of 45)	exon (NM_014014, exon 37 of 45)	12675	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
146105	chr20	47748871	47749030	+	0	NA	intron (NM_198596, intron 2 of 20)	LTR33|LTR|ERVL	37114	NM_018837	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
138605	chr2	208267871	208268230	+	0	NA	intron (NM_015040, intron 1 of 41)	intron (NM_015040, intron 1 of 41)	1783	NM_152671	200576		NM_015040	ENSG00000115020	PIKFYVE	CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29	phosphoinositide kinase, FYVE-type zinc finger containing	protein-coding
36845	chr11	10303701	10304300	+	0	NA	Intergenic	Intergenic	-1073	NM_001124	133		NM_001124	ENSG00000148926	ADM	AM|PAMP	adrenomedullin	protein-coding
225575	chr9	36028521	36028980	+	0	NA	Intergenic	AluSz|SINE|Alu	-8163	NM_001316345	8434		NM_021111	ENSG00000122707	RECK	ST15	reversion inducing cysteine rich protein with kazal motifs	protein-coding
18755	chr1	167495801	167496000	+	0	NA	intron (NM_001378515, intron 1 of 8)	L2a|LINE|L2	22629	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
202813	chr6	159681051	159681550	+	0	NA	3' UTR (NM_001322819, exon 5 of 5)	3' UTR (NM_001322819, exon 5 of 5)	11941	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
205484	chr7	17769821	17770100	+	0	NA	Intergenic	Intergenic	170534	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
74470	chr15	59797901	59798100	+	0	NA	Intergenic	L1M7|LINE|L1	-108680	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
139394	chr2	222302171	222302330	+	0	NA	intron (NR_161172, intron 1 of 1)	intron (NR_161172, intron 1 of 1)	-3252	NM_000438	5077		NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|PAX-3|WS1|WS3	paired box 3	protein-coding
148272	chr20	63690071	63690430	+	0	NA	intron (NM_032957, intron 25 of 34)	intron (NM_032957, intron 25 of 34)	-6402	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
191362	chr6	7243051	7243750	+	0	NA	intron (NM_001003700, intron 11 of 11)	intron (NM_001003700, intron 11 of 11)	69799	NM_003144	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
31538	chr10	96902471	96902630	+	0	NA	intron (NM_032440, intron 2 of 7)	intron (NM_032440, intron 2 of 7)	69605	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
138861	chr2	216692211	216692580	+	0	NA	intron (NM_000599, intron 1 of 3)	CpG	3154	NM_000599	3488		NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
230806	chr9	129020671	129021250	+	0	NA	intron (NR_163192, intron 1 of 10)	intron (NR_163192, intron 1 of 10)	7371	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
193815	chr6	31469451	31470080	+	0	NA	Intergenic	L2|LINE|L2	-1464	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
231139	chr9	129853601	129853800	+	0	NA	intron (NM_001110303, intron 3 of 25)	intron (NM_001110303, intron 3 of 25)	-15905	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
101137	chr17	65041301	65041500	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	14374	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
219433	chr8	71854371	71854630	+	0	NA	intron (NR_033651, intron 1 of 2)	MLT2D|LTR|ERVL	-10088	NM_005098	9242		NM_005098	ENSG00000178860	MSC	ABF-1|ABF1|MYOR|bHLHa22	musculin	protein-coding
200198	chr6	131136951	131137600	+	0	NA	non-coding (NR_164832, exon 2 of 9)	non-coding (NR_164832, exon 2 of 9)	1808	NR_164833	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
184796	chr5	111223351	111224880	+	0	NA	promoter-TSS (NM_001323376)	promoter-TSS (NM_001323376)	198	NM_001323374	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
95918	chr17	38912251	38912680	+	0	NA	intron (NM_006148, intron 4 of 6)	intron (NM_006148, intron 4 of 6)	-2514	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
2965	chr1	11927551	11928500	+	0	NA	Intergenic	Intergenic	-1598	NM_138346	90231		NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
201705	chr6	149708501	149708900	+	0	NA	intron (NM_001350339, intron 1 of 9)	MLT1J2|LTR|ERVL-MaLR	7725	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
199176	chr6	111756751	111756850	+	0	NA	intron (NM_002037, intron 3 of 13)	L1ME4a|LINE|L1	2331	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
225462	chr9	35406521	35406780	+	0	NA	promoter-TSS (NR_003582)	promoter-TSS (NR_003582)	-105	NR_003581	158381		NR_003581	ENSG00000290567	ATP8B5P	FetA	ATPase phospholipid transporting 8B5, pseudogene	pseudo
93256	chr17	17971501	17973060	+	0	NA	promoter-TSS (NM_001130091)	promoter-TSS (NM_001130091)	120	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
149948	chr21	36328251	36328850	+	0	NA	intron (NM_001320445, intron 1 of 15)	AluSx|SINE|Alu	8353	NM_015358	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
14984	chr1	148044451	148045030	+	0	NA	Intergenic	Intergenic	-4562	NR_146087	728920		NR_146087		PDE4DIPP1	PDE4DIP1	PDE4DIP pseudogene 1	pseudo
211422	chr7	105054671	105055280	+	0	NA	intron (NM_182931, intron 3 of 26)	intron (NM_182931, intron 3 of 26)	40770	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
186494	chr5	138240521	138241130	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-27502	NM_004661	8697		NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
55736	chr12	108325771	108325930	+	0	NA	intron (NM_001142344, intron 1 of 2)	intron (NM_001142344, intron 1 of 2)	-5188	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
104306	chr17	80894301	80894900	+	0	NA	intron (NM_020761, intron 20 of 33)	intron (NM_020761, intron 20 of 33)	76613	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
73159	chr15	41436471	41436630	+	0	NA	intron (NM_015138, intron 1 of 17)	AluSx1|SINE|Alu	19446	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
31769	chr10	98132501	98132700	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2024	NM_001256620	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
176649	chr4	99939251	99939830	+	0	NA	intron (NM_001031723, intron 1 of 7)	intron (NM_001031723, intron 1 of 7)	7078	NM_001278311	79982		NM_024920	ENSG00000164031	DNAJB14	EGNR9427|PRO34683	DnaJ heat shock protein family (Hsp40) member B14	protein-coding
35761	chr11	2148821	2150250	+	0	NA	promoter-TSS (NM_001007139)	promoter-TSS (NM_001007139)	68	NM_001007139	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
154568	chr22	36257901	36258100	+	0	NA	intron (NM_145343, intron 5 of 6)	MIR|SINE|MIR	4867	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
52862	chr12	57129371	57130380	+	0	NA	intron (NM_002332, intron 1 of 88)	intron (NM_002332, intron 1 of 88)	1392	NM_002332	4035		NM_002332	ENSG00000123384	LRP1	A2MR|APOER|APR|CD91|DDH3|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5	LDL receptor related protein 1	protein-coding
122474	chr19	49548901	49549750	+	0	NA	Intergenic	Intergenic	21322	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
141973	chr20	1329951	1330650	+	0	NA	intron (NR_040047, intron 1 of 2)	intron (NR_040047, intron 1 of 2)	-1161	NM_080489	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
102585	chr17	75881521	75882380	+	0	NA	Intergenic	Intergenic	-3369	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
77550	chr15	84757621	84757880	+	0	NA	intron (NM_014630, intron 1 of 10)	AluSx|SINE|Alu	9158	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
165395	chr3	96617301	96618230	+	0	NA	Intergenic	Intergenic	-196829	NM_001080448	285220		NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
167418	chr3	129015371	129016100	+	0	NA	intron (NM_024768, intron 2 of 7)	intron (NM_024768, intron 2 of 7)	-11733	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
93502	chr17	18991551	18991650	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	13164	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
118420	chr19	35777771	35777930	+	0	NA	exon (NM_001366178, exon 3 of 21)	exon (NM_001366178, exon 3 of 21)	2286	NM_001366178	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
203286	chr6	169809251	169809350	+	0	NA	Intergenic	Intergenic	-10475	NR_026781	401288		NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
88974	chr16	87865821	87867400	+	0	NA	intron (NM_003486, intron 1 of 9)	AluSq|SINE|Alu	2897	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
18929	chr1	168468501	168468980	+	0	NA	intron (NR_125956, intron 4 of 4)	L2a|LINE|L2	26904	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
61220	chr13	49571621	49572280	+	0	NA	intron (NM_001352502, intron 1 of 11)	intron (NM_001352502, intron 1 of 11)	13608	NM_001352500	55213		NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RDEOA	RCC1 and BTB domain containing protein 1	protein-coding
106841	chr18	24027471	24028030	+	0	NA	intron (NM_001135993, intron 1 of 13)	AluJo|SINE|Alu	-12290	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
170184	chr3	183699821	183700280	+	0	NA	intron (NM_001351371, intron 1 of 21)	L1ME3G|LINE|L1	2232	NM_001351370	55689		NM_018023	ENSG00000163872	YEATS2	FAME4	YEATS domain containing 2	protein-coding
62557	chr13	99911651	99912350	+	0	NA	intron (NR_120421, intron 1 of 4)	intron (NR_120421, intron 1 of 4)	45165	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
183921	chr5	87396721	87397780	+	0	NA	intron (NM_001239, intron 7 of 8)	AluSx1|SINE|Alu	15654	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
167685	chr3	130113651	130114030	+	0	NA	intron (NR_146653, intron 2 of 2)	intron (NR_146653, intron 2 of 2)	1290	NR_146654	105374104		NR_146653	ENSG00000249846	LINC02021	-	long intergenic non-protein coding RNA 2021	ncRNA
148527	chr20	64104301	64104500	+	0	NA	3' UTR (NM_005286, exon 2 of 2)	3' UTR (NM_005286, exon 2 of 2)	3165	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
175498	chr4	73260801	73261200	+	0	NA	Intergenic	Intergenic	-2202	NM_032217	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
220136	chr8	94842821	94843130	+	0	NA	intron (NM_017864, intron 10 of 26)	L1ME3B|LINE|L1	19685	NR_073445	55656		NM_017864	ENSG00000164941	INTS8	C8orf52|INT8|NEDCHS	integrator complex subunit 8	protein-coding
113506	chr19	10100271	10100450	+	0	NA	intron (NM_031917, intron 1 of 5)	AluJo|SINE|Alu	2297	NM_001321411	83854		NM_031917	ENSG00000130812	ANGPTL6	AGF|ARP5	angiopoietin like 6	protein-coding
68139	chr14	75535071	75535430	+	0	NA	intron (NM_006399, intron 2 of 2)	AluJr|SINE|Alu	12781	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
120630	chr19	45063451	45063850	+	0	NA	intron (NM_001278439, intron 10 of 19)	AluSz6|SINE|Alu	-11977	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
199568	chr6	118897721	118897980	+	0	NA	intron (NM_001378365, intron 7 of 7)	intron (NM_001378365, intron 7 of 7)	3698	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
158658	chr3	5025301	5025500	+	0	NA	Intergenic	Intergenic	-45439	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
154176	chr22	31312951	31313630	+	0	NA	Intergenic	AluSz6|SINE|Alu	-20756	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
169788	chr3	172867501	172867700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	116598	NM_001349096	1894		NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
151455	chr21	46180951	46181050	+	0	NA	intron (NM_032261, intron 1 of 3)	intron (NM_032261, intron 1 of 3)	3459	NM_001142854	84221		NM_032261	ENSG00000160284	SPATC1L	C21orf56	spermatogenesis and centriole associated 1 like	protein-coding
196022	chr6	42026451	42026950	+	0	NA	intron (NM_001136017, intron 1 of 4)	MLT1J|LTR|ERVL-MaLR	22194	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
184047	chr5	91380801	91381400	+	0	NA	intron (NR_027435, intron 1 of 2)	CpG	753	NR_027435	100129716		NR_027435	ENSG00000281357	ARRDC3-AS1	-	ARRDC3 antisense RNA 1	ncRNA
172950	chr4	3527871	3528030	+	0	NA	intron (NM_002337, intron 1 of 7)	intron (NM_002337, intron 1 of 7)	4199	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
192307	chr6	21588801	21589570	+	0	NA	Intergenic	Intergenic	-4566	NM_003107	6659		NM_003107	ENSG00000124766	SOX4	CSS10|EVI16	SRY-box transcription factor 4	protein-coding
177315	chr4	109690651	109691600	+	0	NA	intron (NM_001226, intron 5 of 6)	intron (NM_001226, intron 5 of 6)	12320	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
32608	chr10	103592521	103593150	+	0	NA	TTS (NM_004210)	TTS (NM_004210)	-75393	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
16942	chr1	155918951	155919250	+	0	NA	TTS (NR_002974)	TTS (NR_002974)	942	NR_002974	677823		NR_002974	ENSG00000207475	SNORA80E	ACA42|SNORA42	small nucleolar RNA, H/ACA box 80E	snoRNA
27704	chr10	33153521	33154380	+	0	NA	Intergenic	Intergenic	-37143	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
23506	chr1	228774371	228774530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	38971	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
221809	chr8	127991321	127991880	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	-17298	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
60170	chr13	40186501	40188780	+	0	NA	intron (NR_046870, intron 2 of 3)	intron (NR_046870, intron 2 of 3)	5831	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
3532	chr1	16075871	16076030	+	0	NA	Intergenic	Intergenic	-2299	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
99418	chr17	50087401	50088400	+	0	NA	intron (NM_002204, intron 24 of 25)	intron (NM_002204, intron 24 of 25)	-6837	NM_001199898	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
155212	chr22	37857921	37858380	+	0	NA	intron (NM_001242923, intron 4 of 10)	AluJr|SINE|Alu	8731	NM_016091	51386		NM_016091	ENSG00000100129	EIF3L	EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005	eukaryotic translation initiation factor 3 subunit L	protein-coding
115292	chr19	14569871	14570280	+	0	NA	intron (NM_004146, intron 1 of 2)	AluSx|SINE|Alu	1991	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
186502	chr5	138337401	138339600	+	0	NA	promoter-TSS (NM_001318098)	promoter-TSS (NM_001318098)	-145	NM_001364026	995		NM_001790	ENSG00000158402	CDC25C	CDC25|PPP1R60	cell division cycle 25C	protein-coding
158908	chr3	9958321	9958780	+	0	NA	Intergenic	AluJr4|SINE|Alu	-6135	NR_134900	285368		NM_207351	ENSG00000163704	PRRT3	-	proline rich transmembrane protein 3	protein-coding
15880	chr1	151501451	151501750	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-9787	NM_020770	57530		NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
155983	chr22	39914471	39914830	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	-11954	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
172600	chr4	2486651	2487100	+	0	NA	intron (NM_001185009, intron 2 of 8)	intron (NM_001185009, intron 2 of 8)	17422	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
7252	chr1	32353701	32353900	+	0	NA	Intergenic	Intergenic	8443	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
156702	chr22	41686351	41687030	+	0	NA	intron (NM_005008, intron 1 of 3)	AluSg|SINE|Alu	2177	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
121167	chr19	46408121	46408580	+	0	NA	Intergenic	Intergenic	5214	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
191260	chr6	6002951	6003050	+	0	NA	intron (NM_001278710, intron 2 of 3)	CpG-23154	1044	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
103316	chr17	77899151	77899650	+	0	NA	Intergenic	Intergenic	-15313	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
148370	chr20	63866971	63867130	+	0	NA	intron (NM_001243892, intron 1 of 5)	AluSp|SINE|Alu	1780	NR_045090	7165		NM_003288	ENSG00000101150	TPD52L2	D54|TPD54	TPD52 like 2	protein-coding
199596	chr6	119192301	119192500	+	0	NA	intron (NM_005907, intron 9 of 12)	intron (NM_005907, intron 9 of 12)	-43207	NM_001100411	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
115127	chr19	14370401	14371450	+	0	NA	Intergenic	AluSz|SINE|Alu	-6935	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
148845	chr21	8409121	8410300	+	0	NA	intron (NR_038958, intron 6 of 6).2	L1PREC2|LINE|L1	12784	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
223850	chr9	72071	72230	+	0	NA	promoter-TSS (NR_121188)	promoter-TSS (NR_121188)	-540	NR_121188	101929127		NR_121188	ENSG00000277631	PGM5P3-AS1	FAM233B	PGM5P3 antisense RNA 1	ncRNA
175466	chr4	72568801	72569400	+	0	NA	5' UTR (NM_014243, exon 1 of 22)	5' UTR (NM_014243, exon 1 of 22)	121	NM_014243	9508		NM_014243	ENSG00000156140	ADAMTS3	ADAMTS-4|HKLLS3	ADAM metallopeptidase with thrombospondin type 1 motif 3	protein-coding
137446	chr2	196979371	196979800	+	0	NA	Intergenic	AluSp|SINE|Alu	-52878	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
236376	chrX	71056671	71056830	+	0	NA	Intergenic	Intergenic	11584	NM_013346	29934		NM_013346	ENSG00000147164	SNX12	-	sorting nexin 12	protein-coding
220614	chr8	100924721	100925280	+	0	NA	exon (NM_001135701, exon 3 of 6)	exon (NM_001135701, exon 3 of 6)	25571	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
184229	chr5	96566951	96567250	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-94937	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
76973	chr15	78195371	78195980	+	0	NA	intron (NM_001199377, intron 2 of 13)	intron (NM_001199377, intron 2 of 13)	38890	NM_015162	23205		NM_015162	ENSG00000103740	ACSBG1	BG|BG1|BGM|GR-LACS|LPD	acyl-CoA synthetase bubblegum family member 1	protein-coding
53787	chr12	68840401	68840800	+	0	NA	3' UTR (NM_001145340, exon 5 of 5)	3' UTR (NM_001145340, exon 5 of 5)	31576	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
132832	chr2	110614951	110615050	+	0	NA	Intergenic	Intergenic	3874	NR_135529	105373553		NR_135529		LOC105373553	-	uncharacterized LOC105373553	ncRNA
73117	chr15	41222801	41223000	+	0	NA	intron (NM_001286441, intron 2 of 11)	AluSc|SINE|Alu	7857	NM_001286441	161829		NM_152596	ENSG00000178997	EXD1	EXDL1	exonuclease 3'-5' domain containing 1	protein-coding
70002	chr14	100065901	100066770	+	0	NA	intron (NM_016337, intron 1 of 13)	MIRc|SINE|MIR	913	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
160336	chr3	27711921	27713730	+	0	NA	Intergenic	Intergenic	9498	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
194805	chr6	34240021	34240480	+	0	NA	promoter-TSS (NR_106893)	promoter-TSS (NR_106893)	-423	NR_106893	102465502		NR_106893	ENSG00000276404	MIR6835	hsa-mir-6835	microRNA 6835	ncRNA
196944	chr6	52578771	52579650	+	0	NA	intron (NR_103447, intron 2 of 3)	MLT1F1|LTR|ERVL-MaLR	1912	NR_103447	401264		NR_103446	ENSG00000225791	TRAM2-AS1	-	TRAM2 antisense RNA 1 (head to head)	ncRNA
125945	chr2	25203021	25203480	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1063	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
182070	chr5	55970701	55970900	+	0	NA	intron (NR_157112, intron 3 of 17)	AluSx1|SINE|Alu	24163	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
107553	chr18	48802271	48802850	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	131960	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
28281	chr10	46024771	46025330	+	0	NA	intron (NM_001145263, intron 1 of 9)	Ricksha_c|DNA|MULE-MuDR	-1592	NM_005437	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
134154	chr2	134230101	134230500	+	0	NA	intron (NM_001371457, intron 1 of 16)	MER1B|DNA|hAT-Charlie	-23772	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
52302	chr12	54736301	54736880	+	0	NA	Intergenic	LTR7C|LTR|ERV1	-88225	NM_001300854	117159		NM_053283	ENSG00000161634	DCD	AIDD|DCD-1|DSEP|HCAP|PIF	dermcidin	protein-coding
6633	chr1	28924421	28925130	+	0	NA	intron (NM_001376013, intron 1 of 20)	L2a|LINE|L2	10199	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
210911	chr7	101210251	101210930	+	0	NA	exon (NM_001084, exon 13 of 19)	exon (NM_001084, exon 13 of 19)	6991	NM_001084	8985		NM_001084	ENSG00000106397	PLOD3	LH3	procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	protein-coding
113887	chr19	10675271	10675430	+	0	NA	intron (NM_153464, intron 4 of 17)	AluSx1|SINE|Alu	21004	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
126090	chr2	25831401	25832530	+	0	NA	intron (NM_018263, intron 2 of 11)	L1MD2|LINE|L1	-1064	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
205432	chr7	16790871	16791100	+	0	NA	TTS (NM_006408)	TTS (NM_006408)	14014	NM_006408	10551		NM_006408	ENSG00000106541	AGR2	AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|RIFTD|XAG-2	anterior gradient 2, protein disulphide isomerase family member	protein-coding
209646	chr7	77797421	77799900	+	0	NA	promoter-TSS (NM_001366084)	promoter-TSS (NM_001366084)	-113	NM_001366082	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
180843	chr5	32582521	32583130	+	0	NA	Intergenic	Intergenic	-2732	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
52971	chr12	57474221	57474630	+	0	NA	exon (NM_032496, exon 15 of 18)	exon (NM_032496, exon 15 of 18)	3442	NM_001319851	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
200578	chr6	136316801	136317280	+	0	NA	Intergenic	Intergenic	-27189	NM_001077440	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
158371	chr22	50474521	50476030	+	0	NA	promoter-TSS (NM_001365819)	promoter-TSS (NM_001365819)	-240	NM_001365819	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
130762	chr2	86821041	86822150	+	0	NA	intron (NM_001178100, intron 3 of 3)	intron (NM_001178100, intron 3 of 3)	-13199	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
109140	chr18	80202001	80202500	+	0	NA	intron (NM_032510, intron 2 of 2)	intron (NM_032510, intron 2 of 2)	45264	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
78015	chr15	89814821	89815400	+	0	NA	promoter-TSS (NM_001150)	promoter-TSS (NM_001150)	-258	NM_001150	290		NM_001150	ENSG00000166825	ANPEP	AP-M|AP-N|APN|CD13|GP150|LAP1|P150|PEPN|hAPN	alanyl aminopeptidase, membrane	protein-coding
88627	chr16	85624801	85625000	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	11578	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
150141	chr21	38306351	38306650	+	0	NA	3' UTR (NM_001276439, exon 4 of 4)	3' UTR (NM_001276439, exon 4 of 4)	34080	NM_170737	3772		NM_002243	ENSG00000157551	KCNJ15	IRKK|KIR1.3|KIR4.2	potassium inwardly rectifying channel subfamily J member 15	protein-coding
217612	chr8	29956821	29957100	+	0	NA	TTS (NR_036104)	TTS (NR_036104)	388	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
178533	chr4	151011551	151012230	+	0	NA	intron (NM_001367550, intron 2 of 56)	AluJr|SINE|Alu	3377	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
71346	chr14	105463451	105463750	+	0	NA	intron (NM_001203258, intron 12 of 20)	intron (NM_001203258, intron 12 of 20)	-9345	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
209990	chr7	92841171	92841330	+	0	NA	intron (NR_110088, intron 1 of 1)	intron (NR_110088, intron 1 of 1)	-4677	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
74371	chr15	58766351	58766650	+	0	NA	Intergenic	Intergenic	4474	NR_135474	101928725		NR_135474	ENSG00000245975	MINDY2-DT	-	MINDY2 divergent transcript	ncRNA
197103	chr6	57095101	57095450	+	0	NA	intron (NM_015555, intron 2 of 13)	intron (NM_015555, intron 2 of 13)	5087	NM_001257273	26036		NM_015555	ENSG00000112200	ZNF451	COASTER|ZATT|dJ417I1.1	zinc finger protein 451	protein-coding
220713	chr8	101906121	101906380	+	0	NA	intron (NM_001040626, intron 3 of 6)	intron (NM_001040626, intron 3 of 6)	-78182	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
225195	chr9	34052501	34052700	+	0	NA	Intergenic	AluSp|SINE|Alu	-3401	NM_001370059	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
13960	chr1	120393521	120393930	+	0	NA	Intergenic	Intergenic	-21302	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
164499	chr3	61249651	61250430	+	0	NA	intron (NR_148921, intron 1 of 4)	intron (NR_148921, intron 1 of 4)	1412	NM_001320900	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
12274	chr1	100491771	100492430	+	0	NA	intron (NM_001319210, intron 11 of 16)	L1ME3Cz|LINE|L1	-46039	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
194661	chr6	33630151	33630600	+	0	NA	TTS (NR_134628)	TTS (NR_134628)	3370	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
82229	chr16	15029921	15030330	+	0	NA	TTS (NM_001285450).2	TTS (NM_001285450).2	-19728	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
74902	chr15	63605701	63606930	+	0	NA	Intergenic	Intergenic	-5488	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
50154	chr12	45878471	45879430	+	0	NA	intron (NM_152641, intron 16 of 20)	L1MC2|LINE|L1	111624	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
35142	chr11	721701	722380	+	0	NA	intron (NM_022772, intron 11 of 20)	intron (NM_022772, intron 11 of 20)	-14957	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
84496	chr16	30495101	30495300	+	0	NA	intron (NM_002209, intron 13 of 30)	AluSx|SINE|Alu	-8719	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
133005	chr2	111619021	111619680	+	0	NA	Intergenic	Intergenic	-124189	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
20740	chr1	200969721	200970700	+	0	NA	3' UTR (NM_001252103, exon 34 of 34)	3' UTR (NM_001252103, exon 34 of 34)	41266	NR_147176	647215		NR_147176	ENSG00000293444	MROH3P	C1orf81	maestro heat like repeat family member 3, pseudogene	pseudo
38386	chr11	44775351	44775680	+	0	NA	intron (NM_130783, intron 2 of 9)	intron (NM_130783, intron 2 of 9)	48553	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
168267	chr3	141454651	141455530	+	0	NA	Intergenic	Intergenic	-31937	NM_001303246	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
7984	chr1	37927251	37927580	+	0	NA	intron (NR_158630, intron 7 of 24)	intron (NR_158630, intron 7 of 24)	4324	NM_001297434	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
13995	chr1	120655471	120655850	+	0	NA	intron (NR_144516, intron 1 of 43)	intron (NR_144516, intron 1 of 43)	9776	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
85954	chr16	57264371	57264530	+	0	NA	intron (NM_015993, intron 1 of 3)	L2a|LINE|L2	19191	NM_012106	23568		NM_012106	ENSG00000102931	ARL2BP	BART|BART1|RP66	ADP ribosylation factor like GTPase 2 binding protein	protein-coding
139858	chr2	230589521	230589800	+	0	NA	Intergenic	Intergenic	110869	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
140140	chr2	231592801	231593000	+	0	NA	promoter-TSS (NM_152614)	promoter-TSS (NM_152614)	36	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
52748	chr12	56643401	56643980	+	0	NA	promoter-TSS (NR_003046)	promoter-TSS (NR_003046)	64	NR_003046	692090		NR_003046		SNORD59B	U59B	small nucleolar RNA, C/D box 59B	snoRNA
10841	chr1	77954201	77954400	+	0	NA	intron (NR_146539, intron 18 of 22)	intron (NR_146539, intron 18 of 22)	24772	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
189424	chr5	172839271	172839430	+	0	NA	intron (NM_001031711, intron 1 of 9)	AluJr|SINE|Alu	5099	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
5059	chr1	24639171	24639900	+	0	NA	Intergenic	Intergenic	-3767	NM_001366568	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
171205	chr3	195716651	195717480	+	0	NA	Intergenic	Intergenic	-3817	NM_152673	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
160760	chr3	32651751	32651850	+	0	NA	Intergenic	AluYa5|SINE|Alu	-33388	NR_046352	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
12754	chr1	109625421	109625900	+	0	NA	intron (NM_139156, intron 2 of 17)	intron (NM_139156, intron 2 of 17)	1672	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
118952	chr19	38836901	38837780	+	0	NA	intron (NM_001533, intron 12 of 12)	intron (NM_001533, intron 12 of 12)	-5546	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
114012	chr19	10874421	10875150	+	0	NA	intron (NM_001370089, intron 1 of 14)	AluSz6|SINE|Alu	2356	NM_001370089	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
102904	chr17	76555451	76555750	+	0	NA	Intergenic	MER41A|LTR|ERV1	-2164	NR_038110	100507246		NR_038108	ENSG00000163597	SNHG16	ELNAT1|Nbla10727|Nbla12061|ncRAN	small nucleolar RNA host gene 16	ncRNA
154092	chr22	30947701	30948300	+	0	NA	intron (NM_014941, intron 6 of 26)	intron (NM_014941, intron 6 of 26)	20287	NM_001303257	22880		NM_014941	ENSG00000133422	MORC2	CMT2Z|DIGFAN|ZCW3|ZCWCC1	MORC family CW-type zinc finger 2	protein-coding
45548	chr11	118773351	118773680	+	0	NA	intron (NM_004397, intron 4 of 13)	AluY|SINE|Alu	17433	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
190580	chr5	181045801	181046050	+	0	NA	intron (NM_152547, intron 2 of 10)	intron (NM_152547, intron 2 of 10)	-2441	NR_107056	102465882		NR_107056	ENSG00000277912	MIR8089	hsa-mir-8089	microRNA 8089	ncRNA
59530	chr13	27227071	27227430	+	0	NA	Intergenic	L1MD2|LINE|L1	10007	NR_120429	102723332		NR_120429		LINC00412	-	long intergenic non-protein coding RNA 412	ncRNA
48116	chr12	7872551	7873280	+	0	NA	promoter-TSS (NM_001286235)	promoter-TSS (NM_001286235)	0	NM_001286236	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
91247	chr17	3958401	3958600	+	0	NA	intron (NM_174953, intron 1 of 22)	L2|LINE|L2	5937	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
101728	chr17	69070851	69071150	+	0	NA	Intergenic	L1P3|LINE|L1	-10073	NM_080283	10350		NM_080283	ENSG00000154258	ABCA9	EST640918	ATP binding cassette subfamily A member 9	protein-coding
174860	chr4	48683971	48684530	+	0	NA	intron (NM_015030, intron 3 of 63)	L2c|LINE|L2	96029	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
236043	chrX	55698521	55698780	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-19099	NM_016656	10325		NM_006064	ENSG00000083750	RRAGB	RAGB|bA465E19.1	Ras related GTP binding B	protein-coding
162830	chr3	49173321	49173780	+	0	NA	intron (NM_173546, intron 2 of 5)	intron (NM_173546, intron 2 of 5)	1952	NM_173546	200942		NM_173546	ENSG00000185909	KLHDC8B	CHL	kelch domain containing 8B	protein-coding
154149	chr22	31274071	31274230	+	0	NA	intron (NM_005569, intron 14 of 15)	intron (NM_005569, intron 14 of 15)	18338	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
102654	chr17	76070451	76071100	+	0	NA	intron (NM_001260502, intron 1 of 14)	AluSx1|SINE|Alu	1742	NM_014230	6730		NM_014230	ENSG00000167881	SRP68	SCN10	signal recognition particle 68	protein-coding
10148	chr1	60133051	60133150	+	0	NA	Intergenic	Intergenic	-59330	NM_152377	127795		NM_152377	ENSG00000162598	C1orf87	CREF	chromosome 1 open reading frame 87	protein-coding
3509	chr1	16048301	16049830	+	0	NA	exon (NM_001165945, exon 1 of 13)	exon (NM_001165945, exon 1 of 13)	303	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
118602	chr19	36686751	36688130	+	0	NA	promoter-TSS (NM_001300979)	promoter-TSS (NM_001300979)	9	NR_110708	101927621		NR_110707	ENSG00000225975	ZNF567-DT	LINC01534	ZNF567 divergent transcript	ncRNA
65892	chr14	55190771	55192550	+	0	NA	promoter-TSS (NM_001146015)	promoter-TSS (NM_001146015)	-75	NM_014750	9787		NM_014750	ENSG00000126787	DLGAP5	DLG7|HURP	DLG associated protein 5	protein-coding
111253	chr19	3527801	3530180	+	0	NA	intron (NM_001136198, intron 6 of 12)	intron (NM_001136198, intron 6 of 12)	6034	NM_001136198	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
68906	chr14	91354101	91354700	+	0	NA	intron (NM_001080414, intron 4 of 29)	intron (NM_001080414, intron 4 of 29)	63420	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
190669	chr5	181259351	181259450	+	0	NA	intron (NM_032765, intron 1 of 1)	intron (NM_032765, intron 1 of 1)	1743	NM_001346048	84851		NM_032765	ENSG00000183718	TRIM52	RNF102	tripartite motif containing 52	protein-coding
65923	chr14	55330351	55331050	+	0	NA	intron (NM_152231, intron 1 of 1)	AluJr|SINE|Alu	58546	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
124700	chr2	3578471	3578850	+	0	NA	intron (NM_001011, intron 5 of 6)	intron (NM_001011, intron 5 of 6)	3400	NM_001011	6201		NM_001011	ENSG00000171863	RPS7	DBA8|S7|eS7	ribosomal protein S7	protein-coding
232202	chr9	134330071	134330400	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	3780	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
160491	chr3	30617571	30618080	+	0	NA	intron (NM_003242, intron 1 of 6)	MER5A1|DNA|hAT-Charlie	11224	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
233539	chrX	231251	231350	+	0	NA	Intergenic	Intergenic	-45056	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228339	chr9	98943921	98944180	+	0	NA	5' UTR (NM_001855, exon 1 of 42)	5' UTR (NM_001855, exon 1 of 42)	143	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
169294	chr3	158570751	158573250	+	0	NA	promoter-TSS (NR_104147)	promoter-TSS (NR_104147)	806	NM_001369782	4291		NM_022443	ENSG00000178053	MLF1	-	myeloid leukemia factor 1	protein-coding
103537	chr17	78645701	78646450	+	0	NA	Intergenic	Intergenic	-14018	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
51724	chr12	53215471	53215830	+	0	NA	exon (NM_001243730, exon 3 of 9)	exon (NM_001243730, exon 3 of 9)	4712	NM_001042728	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
19237	chr1	172640271	172640630	+	0	NA	Intergenic	Intergenic	-18558	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
9754	chr1	53323201	53323400	+	0	NA	intron (NM_017522, intron 2 of 15)	MIRb|SINE|MIR	4770	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
172422	chr4	1857521	1857780	+	0	NA	Intergenic	Intergenic	-1494	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
217966	chr8	38306801	38307000	+	0	NA	intron (NM_023034, intron 12 of 23)	AluY|SINE|Alu	-37668	NM_001354454	84513		NM_032483	ENSG00000147535	PLPP5	DPPL1|HTPAP|PPAPDC1B	phospholipid phosphatase 5	protein-coding
136324	chr2	175153871	175154030	+	0	NA	intron (NR_045772, intron 1 of 14)	AluSq|SINE|Alu	13759	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
40533	chr11	64299171	64300500	+	0	NA	promoter-TSS (NM_001039496)	promoter-TSS (NM_001039496)	-523	NM_001039496	25858		NM_001039496	ENSG00000219435	CATSPERZ	C11orf20|TEX40	catsper channel auxiliary subunit zeta	protein-coding
200986	chr6	139377121	139377380	+	0	NA	Intergenic	L2c|LINE|L2	-2602	NM_006079	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
160517	chr3	30642871	30643350	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	36509	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
214919	chr7	151506821	151507330	+	0	NA	intron (NM_005614, intron 1 of 7)	intron (NM_005614, intron 1 of 7)	12820	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
218059	chr8	38903671	38904730	+	0	NA	intron (NM_021623, intron 1 of 11)	intron (NM_021623, intron 1 of 11)	2854	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
73319	chr15	41904471	41905680	+	0	NA	intron (NM_139265, intron 5 of 5)	intron (NM_139265, intron 5 of 5)	-11022	NM_016642	51332		NM_016642	ENSG00000137877	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin beta, non-erythrocytic 5	protein-coding
112228	chr19	5710501	5711080	+	0	NA	intron (NR_076392, intron 5 of 18)	AluSx|SINE|Alu	9356	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
113381	chr19	8838201	8838400	+	0	NA	Intergenic	Intergenic	-4293	NM_145208	85509		NM_145208	ENSG00000170948	MBD3L1	MBD3L	methyl-CpG binding domain protein 3 like 1	protein-coding
15133	chr1	148749001	148750750	+	0	NA	non-coding (NR_104005, exon 1 of 1).2	non-coding (NR_104005, exon 1 of 1).2	1101	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
26424	chr10	17229001	17229500	+	0	NA	intron (NM_003380, intron 1 of 9)	CpG	735	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
158877	chr3	9882371	9883130	+	0	NA	Intergenic	AluYj4|SINE|Alu	-2496	NM_001199551	63924		NM_022094	ENSG00000187288	CIDEC	CIDE-3|CIDE3|FPLD5|FSP27	cell death inducing DFFA like effector c	protein-coding
231425	chr9	131233051	131234850	+	0	NA	3' UTR (NM_005085, exon 36 of 36)	3' UTR (NM_005085, exon 36 of 36)	42560	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
102753	chr17	76270041	76271200	+	0	NA	3' UTR (NM_182565, exon 3 of 3)	3' UTR (NM_182565, exon 3 of 3)	5272	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
238628	chrX	153957971	153958230	+	0	NA	exon (NM_005334, exon 11 of 26)	exon (NM_005334, exon 11 of 26)	-10665	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
180221	chr5	1522931	1525230	+	0	NA	promoter-TSS (NM_024830)	promoter-TSS (NM_024830)	-120	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
218353	chr8	43057211	43058480	+	0	NA	intron (NR_033698, intron 1 of 7)	AluSq2|SINE|Alu	1522	NM_002027	2339		NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, subunit alpha	protein-coding
94454	chr17	29253101	29253380	+	0	NA	intron (NM_005208, intron 4 of 5)	intron (NM_005208, intron 4 of 5)	6381	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
192801	chr6	26593601	26594000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3153	NM_013375	29777		NM_013375	ENSG00000146109	ABT1	Esf2|hABT1	activator of basal transcription 1	protein-coding
223782	chr8	144582201	144582530	+	0	NA	intron (NM_001308207, intron 3 of 11)	intron (NM_001308207, intron 3 of 11)	23330	NM_025251	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
157070	chr22	42602401	42602800	+	0	NA	intron (NM_001278657, intron 2 of 8)	MIRc|SINE|MIR	12283	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
57079	chr12	121023051	121023150	+	0	NA	intron (NM_001261825, intron 3 of 3)	intron (NM_001261825, intron 3 of 3)	-6613	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
17464	chr1	156708321	156708580	+	0	NA	Intergenic	Intergenic	-2634	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
95996	chr17	39202901	39203830	+	0	NA	intron (NM_001330200, intron 4 of 5)	AluSc8|SINE|Alu	3042	NM_001330200	6143		NM_000981	ENSG00000108298	RPL19	L19|eL19	ribosomal protein L19	protein-coding
168139	chr3	138943851	138944150	+	0	NA	promoter-TSS (NR_121649)	promoter-TSS (NR_121649)	20	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
84285	chr16	30075101	30076900	+	0	NA	promoter-TSS (NM_001303503)	promoter-TSS (NM_001303503)	6	NM_001303507	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
186935	chr5	139639701	139640300	+	0	NA	Intergenic	Intergenic	-7299	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
217998	chr8	38391071	38391750	+	0	NA	intron (NM_144652, intron 2 of 9)	AluSc|SINE|Alu	4279	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
127889	chr2	46179001	46179980	+	0	NA	intron (NM_005400, intron 14 of 14)	intron (NM_005400, intron 14 of 14)	-117917	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
98802	chr17	48263201	48263830	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-30832	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
203663	chr7	994871	996080	+	0	NA	intron (NR_156697, intron 4 of 4)	L4_C_Mam|LINE|RTE-X	12294	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
228033	chr9	95894521	95894780	+	0	NA	intron (NM_001375291, intron 2 of 18)	AluSq2|SINE|Alu	-18673	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
21789	chr1	206962371	206962530	+	0	NA	exon (NM_001122979, exon 6 of 8)	exon (NM_001122979, exon 6 of 8)	8010	NM_001122979	83953		NM_032029	ENSG00000162897	FCAMR	CD351|FCA/MR|FKSG87|Fcalpha/muR	Fc alpha and mu receptor	protein-coding
41606	chr11	66388651	66389280	+	0	NA	Intergenic	LTR41|LTR|ERVL	-16489	NM_001300868	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
25781	chr10	11157601	11158800	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-6681	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
97713	chr17	44347751	44347850	+	0	NA	intron (NM_002087, intron 1 of 12)	AluSx1|SINE|Alu	2498	NM_002087	2896		NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin precursor	protein-coding
99850	chr17	55432101	55432700	+	0	NA	Intergenic	Intergenic	-10565	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
54366	chr12	89713601	89714200	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-4534	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
147071	chr20	53750201	53750400	+	0	NA	Intergenic	Intergenic	125409	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
89688	chr16	89387771	89388430	+	0	NA	intron (NR_045839, intron 2 of 9)	L1MC4a|LINE|L1	-42818	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
34331	chr10	132170651	132170750	+	0	NA	intron (NM_001105521, intron 24 of 24)	intron (NM_001105521, intron 24 of 24)	-16248	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
56489	chr12	116246501	116246930	+	0	NA	intron (NM_015335, intron 1 of 30)	AluJo|SINE|Alu	30978	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
68337	chr14	77600271	77600430	+	0	NA	intron (NM_004863, intron 1 of 11)	intron (NM_004863, intron 1 of 11)	16287	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
94232	chr17	28660421	28660730	+	0	NA	intron (NR_045585, intron 1 of 2)	MER5A|DNA|hAT-Charlie	1331	NM_006923	6388		NM_006923	ENSG00000132581	SDF2	-	stromal cell derived factor 2	protein-coding
90815	chr17	2263921	2264280	+	0	NA	intron (NM_017575, intron 8 of 18)	intron (NM_017575, intron 8 of 18)	2085	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
203764	chr7	1192351	1192930	+	0	NA	Intergenic	Intergenic	31855	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
8662	chr1	41868321	41868780	+	0	NA	intron (NR_038260, intron 1 of 2)	intron (NR_038260, intron 1 of 2)	50372	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
42404	chr11	69048171	69049880	+	0	NA	promoter-TSS (NM_139075)	promoter-TSS (NM_139075)	93	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
209679	chr7	80136971	80137130	+	0	NA	intron (NM_001256414, intron 1 of 7)	MER20|DNA|hAT-Charlie	1266	NM_001256414	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
51212	chr12	50542551	50542730	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	37655	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
139677	chr2	227129901	227130100	+	0	NA	intron (NM_000092, intron 4 of 47)	intron (NM_000092, intron 4 of 47)	34205	NM_000092	1286		NM_000092	ENSG00000081052	COL4A4	ATS2|BFH|BFH1|CA44	collagen type IV alpha 4 chain	protein-coding
25992	chr10	12023521	12024230	+	0	NA	intron (NM_080599, intron 3 of 21)	AluJb|SINE|Alu	18934	NM_015542	26019		NM_015542	ENSG00000151461	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense mediated mRNA decay	protein-coding
28806	chr10	62225051	62225550	+	0	NA	intron (NM_145307, intron 6 of 11)	MER67A|LTR|ERV1	43544	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
63761	chr14	21246671	21247180	+	0	NA	intron (NM_001077443, intron 1 of 7)	Tigger2a|DNA|TcMar-Tigger	22517	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
25823	chr10	11206271	11206850	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	41530	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
72966	chr15	40519801	40520080	+	0	NA	Intergenic	Intergenic	12610	NR_002208	359821		NR_002208		MRPL42P5	-	mitochondrial ribosomal protein L42 pseudogene 5	pseudo
226672	chr9	75027221	75029200	+	0	NA	promoter-TSS (NM_152420)	promoter-TSS (NM_152420)	83	NM_152420	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
36933	chr11	10861421	10861680	+	0	NA	intron (NR_034137, intron 1 of 2)	AluJb|SINE|Alu	3333	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
117148	chr19	19318301	19318800	+	0	NA	intron (NM_172231, intron 1 of 13)	AluJr|SINE|Alu	1959	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
106223	chr18	11853071	11854200	+	0	NA	3' UTR (NM_020412, exon 1 of 1)	3' UTR (NM_020412, exon 1 of 1)	2222	NM_020412	57132		NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
39059	chr11	47955101	47955630	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-25194	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
121239	chr19	46655921	46656180	+	0	NA	intron (NM_145056, intron 1 of 3)	(ATTT)n|Simple_repeat|Simple_repeat	-1332	NM_001301046	147906		NM_145056	ENSG00000197380	DACT3	DAPPER3|RRR1	dishevelled binding antagonist of beta catenin 3	protein-coding
106347	chr18	13137761	13139330	+	0	NA	Intergenic	Intergenic	-79137	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207477	chr7	44630001	44630200	+	0	NA	intron (NM_001363523, intron 2 of 23)	intron (NM_001363523, intron 2 of 23)	23473	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
137479	chr2	197128101	197128530	+	0	NA	intron (NM_153697, intron 4 of 9)	L1PA10|LINE|L1	-69676	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
236349	chrX	70289471	70290600	+	0	NA	promoter-TSS (NM_001370176)	promoter-TSS (NM_001370176)	-69	NM_012310	24137		NM_012310	ENSG00000090889	KIF4A	KIF4|KIF4G1|MRX100|TMDI|XLID100	kinesin family member 4A	protein-coding
24236	chr1	236158551	236159000	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	16236	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
87146	chr16	69185551	69185650	+	0	NA	Intergenic	AluSq|SINE|Alu	-1547	NM_006750	6645		NM_006750	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin beta 2	protein-coding
116758	chr19	18484971	18485400	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	36885	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
192665	chr6	26213621	26213880	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	2938	NM_003518	8339		NM_003518	ENSG00000273802	H2BC8	H2B.1A|H2B/a|H2BC10|H2BC4|H2BC6|H2BC7|H2BFA|HIST1H2BG|dJ221C16.8	H2B clustered histone 8	protein-coding
213211	chr7	132905051	132905550	+	0	NA	intron (NM_001317177, intron 4 of 8)	L1PA11|LINE|L1	129615	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
120937	chr19	45673621	45673880	+	0	NA	intron (NM_000164, intron 5 of 13)	AluSc|SINE|Alu	-1178	NR_030372	693227		NR_030372	ENSG00000207773	MIR642A	MIR642|MIRN642|hsa-mir-642|hsa-mir-642a|mir-642a	microRNA 642a	ncRNA
74400	chr15	58930201	58930750	+	0	NA	intron (NR_135043, intron 1 of 18)	intron (NR_135043, intron 1 of 18)	3204	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
55413	chr12	104481871	104482530	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	25252	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
221998	chr8	130010601	130011500	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	-2597	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
111889	chr19	4666801	4667450	+	0	NA	intron (NM_019107, intron 2 of 5)	AluY|SINE|Alu	3217	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
74168	chr15	55315571	55316280	+	0	NA	Intergenic	L1PA8|LINE|L1	3198	NM_001308423	101928527		NM_001308421	ENSG00000225973	PIGBOS1	HP06981	PIGB opposite strand 1	protein-coding
13462	chr1	114525071	114525230	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-13947	NM_033020	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
22189	chr1	212322971	212323330	+	0	NA	intron (NM_001199756, intron 1 of 12)	intron (NM_001199756, intron 1 of 12)	21292	NM_001199756	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
172657	chr4	2617351	2617450	+	0	NA	intron (NM_001366318, intron 2 of 20)	AluSg4|SINE|Alu	-8032	NM_003704	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
223586	chr8	144277371	144278400	+	0	NA	intron (NM_015201, intron 2 of 15)	intron (NM_015201, intron 2 of 15)	11432	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
238386	chrX	150361021	150362300	+	0	NA	Intergenic	CpG	-1657	NM_001177465	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
168248	chr3	141400371	141401080	+	0	NA	intron (NM_001376171, intron 2 of 4)	MIR|SINE|MIR	-1037	NM_001376180	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
63296	chr13	113980871	113981030	+	0	NA	intron (NM_001320822, intron 23 of 23).2	GA-rich|Low_complexity|Low_complexity	-6874	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
6717	chr1	29283071	29283680	+	0	NA	intron (NM_133177, intron 12 of 30)	intron (NM_133177, intron 12 of 30)	46853	NM_133177	10076		NM_005704	ENSG00000060656	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	protein tyrosine phosphatase receptor type U	protein-coding
146380	chr20	49282701	49283010	+	0	NA	intron (NR_003604, intron 4 of 4)	HERVIP10B3-int|LTR|ERV1	2172	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
85230	chr16	48117421	48117730	+	0	NA	intron (NM_033226, intron 11 of 28)	intron (NM_033226, intron 11 of 28)	29195	NM_033226	94160		NM_033226	ENSG00000140798	ABCC12	MRP9	ATP binding cassette subfamily C member 12	protein-coding
73611	chr15	44563351	44563850	+	0	NA	TTS (NM_001284336)	TTS (NM_001284336)	26453	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
156381	chr22	41098771	41098930	+	0	NA	intron (NM_001362843, intron 1 of 29)	MIR|SINE|MIR	6258	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
74861	chr15	63545821	63546280	+	0	NA	intron (NR_046342, intron 4 of 15)	intron (NR_046342, intron 4 of 15)	41457	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
45455	chr11	118488251	118488950	+	0	NA	intron (NM_001197104, intron 10 of 35)	intron (NM_001197104, intron 10 of 35)	-38874	NM_001346097	143941		NM_001080441	ENSG00000172425	TTC36	HBP21	tetratricopeptide repeat domain 36	protein-coding
158899	chr3	9937501	9937900	+	0	NA	intron (NR_164476, intron 4 of 9)	intron (NR_164476, intron 4 of 9)	3649	NM_001374318	78987		NM_015513	ENSG00000163703	CRELD1	AVSD2|CIRRIN|JELANS	cysteine rich with EGF like domains 1	protein-coding
118819	chr19	38554101	38554300	+	0	NA	intron (NM_000540, intron 89 of 105)	intron (NM_000540, intron 89 of 105)	-42147	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
79804	chr16	1400951	1401400	+	0	NA	intron (NM_001372107, intron 4 of 14)	intron (NM_001372107, intron 4 of 14)	13529	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
134715	chr2	144512721	144513180	+	0	NA	non-coding (NR_033258, exon 3 of 3)	non-coding (NR_033258, exon 3 of 3)	-6664	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
197915	chr6	89432621	89433600	+	0	NA	promoter-TSS (NM_001242813)	promoter-TSS (NM_001242813)	-42	NM_001242809	22881		NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
192350	chr6	24498501	24498700	+	0	NA	intron (NM_170740, intron 1 of 10)	intron (NM_170740, intron 1 of 10)	3631	NM_001368954	7915		NM_001080	ENSG00000112294	ALDH5A1	SSADH|SSDH	aldehyde dehydrogenase 5 family member A1	protein-coding
172907	chr4	3489601	3490500	+	0	NA	intron (NM_001256896, intron 3 of 3)	(TCCT)n|Simple_repeat|Simple_repeat	5506	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
259	chr1	919421	920000	+	0	NA	promoter-TSS (NR_026874)	promoter-TSS (NR_026874)	-18	NR_026874	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
49729	chr12	31329371	31329880	+	0	NA	Intergenic	Intergenic	-3438	NM_001135811	58516		NM_021238	ENSG00000139146	SINHCAF	C12orf14|FAM60A|L4|TERA	SIN3-HDAC complex associated factor	protein-coding
123169	chr19	52228071	52228930	+	0	NA	non-coding (NR_033500, exon 14 of 14)	non-coding (NR_033500, exon 14 of 14)	6480	NR_106859	102466984		NR_106859	ENSG00000274380	MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
60527	chr13	41427621	41428850	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-14329	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
169972	chr3	179321351	179321850	+	0	NA	Intergenic	Intergenic	-1276	NM_001375806	51193		NM_016331	ENSG00000121864	ZNF639	ANC-2H01|ANC_2H01|ZASC1	zinc finger protein 639	protein-coding
231316	chr9	130096051	130096350	+	0	NA	intron (NM_001136557, intron 9 of 19)	intron (NM_001136557, intron 9 of 19)	42294	NM_001136557	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
212134	chr7	116499171	116499950	+	0	NA	promoter-TSS (NM_001206748)	promoter-TSS (NM_001206748)	-178	NM_001206747	858		NM_001233	ENSG00000105971	CAV2	CAV	caveolin 2	protein-coding
33956	chr10	124637971	124638130	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-65978	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
91589	chr17	5237301	5238730	+	0	NA	Intergenic	Intergenic	-3155	NM_001271842	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
189209	chr5	171435201	171435400	+	0	NA	intron (NM_003862, intron 2 of 4)	L2a|LINE|L2	15653	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
95581	chr17	37026151	37026480	+	0	NA	intron (NM_012138, intron 10 of 11)	intron (NM_012138, intron 10 of 11)	-7430	NR_036056	100422969		NR_036056	ENSG00000276326	MIR2909	-	microRNA 2909	ncRNA
204685	chr7	5503451	5503550	+	0	NA	intron (NM_024963, intron 2 of 4)	AluJb|SINE|Alu	-7583	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
183558	chr5	80135921	80137330	+	0	NA	intron (NR_126061, intron 11 of 13)	L1MA8|LINE|L1	-52960	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
45937	chr11	121289671	121289830	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-3021	NM_006918	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
146234	chr20	48817551	48817650	+	0	NA	intron (NM_020820, intron 1 of 39)	MIR|SINE|MIR	10399	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
72282	chr15	30859221	30859500	+	0	NA	Intergenic	LTR47A2|LTR|ERVL	41324	NR_072991	390561		NR_072991		HERC2P10	-	HERC2 pseudogene 10	pseudo
88828	chr16	87463951	87465180	+	0	NA	intron (NM_015144, intron 1 of 12)	intron (NM_015144, intron 1 of 12)	28459	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
201005	chr6	140149711	140149850	+	0	NA	Intergenic	AluYa5|SINE|Alu	-55472	NR_037441	100500879		NR_037441	ENSG00000263514	MIR3668	-	microRNA 3668	ncRNA
117239	chr19	19429571	19430300	+	0	NA	intron (NM_001384517, intron 2 of 12)	intron (NM_001384517, intron 2 of 12)	-5128	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
106431	chr18	13578471	13579080	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-32339	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
184096	chr5	93610771	93611130	+	0	NA	Intergenic	Intergenic	9838	NR_031754	100313887		NR_031754	ENSG00000284336	MIR2277	mir-2277	microRNA 2277	ncRNA
75428	chr15	65788701	65788930	+	0	NA	intron (NM_001376919, intron 1 of 31)	AluJb|SINE|Alu	3478	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
129173	chr2	68156921	68158200	+	0	NA	promoter-TSS (NM_001329917)	promoter-TSS (NM_001329917)	-33	NM_138458	116143		NM_138458	ENSG00000243667	DNAAF10	WDR92	dynein axonemal assembly factor 10	protein-coding
88121	chr16	81593771	81593930	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-17498	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
27513	chr10	32298521	32299180	+	0	NA	intron (NR_168511, intron 2 of 13)	intron (NR_168511, intron 2 of 13)	48308	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
143456	chr20	30585201	30586330	+	0	NA	Intergenic	CpG	-182303	NR_045115	140678		NR_045115		MLLT10P1	MLLT10L|bA348I14.3	MLLT10 pseudogene 1	pseudo
7055	chr1	31964071	31964730	+	0	NA	Intergenic	Intergenic	-26032	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
214852	chr7	151339421	151340380	+	0	NA	Intergenic	L1MEg|LINE|L1	-1912	NM_001385355	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
121148	chr19	46297001	46297200	+	0	NA	promoter-TSS (NM_152795)	promoter-TSS (NM_152795)	58	NM_152795	64344		NM_022462	ENSG00000124440	HIF3A	HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3 subunit alpha	protein-coding
35218	chr11	821971	822780	+	0	NA	intron (NM_020376, intron 4 of 9)	intron (NM_020376, intron 4 of 9)	3461	NM_020376	57104		NM_020376	ENSG00000177666	PNPLA2	1110001C14Rik|ATGL|FP17548|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin like phospholipase domain containing 2	protein-coding
173534	chr4	10020651	10020950	+	0	NA	intron (NM_001001290, intron 2 of 12)	intron (NM_001001290, intron 2 of 12)	697	NM_020041	56606		NM_020041	ENSG00000109667	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 member 9	protein-coding
199825	chr6	127738221	127738680	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	116738	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
204418	chr7	3106421	3107180	+	0	NA	Intergenic	L2b|LINE|L2	51773	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
209697	chr7	83162371	83162970	+	0	NA	5' UTR (NM_033026, exon 1 of 25)	5' UTR (NM_033026, exon 1 of 25)	214	NM_014510	27445		NM_014510	ENSG00000186472	PCLO	ACZ|PCH3	piccolo presynaptic cytomatrix protein	protein-coding
139699	chr2	227473921	227474180	+	0	NA	intron (NM_001135189, intron 1 of 11)	intron (NM_001135189, intron 1 of 11)	1894	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
16440	chr1	154574471	154574630	+	0	NA	intron (NM_000748, intron 5 of 5)	intron (NM_000748, intron 5 of 5)	6772	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
138216	chr2	202735921	202736180	+	0	NA	intron (NM_173511, intron 4 of 7)	intron (NM_173511, intron 4 of 7)	93184	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
162054	chr3	46811371	46811530	+	0	NA	non-coding (NR_160551, exon 2 of 3)	non-coding (NR_160551, exon 2 of 3)	1124	NR_160551	729756		NR_160551		PRSS44P	PRSS44|TESSP-4|TESSP4	serine protease 44, pseudogene	pseudo
152190	chr22	20107901	20108530	+	0	NA	intron (NM_022720, intron 12 of 13)	intron (NM_022720, intron 12 of 13)	6536	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
112110	chr19	5585121	5586980	+	0	NA	TTS (NM_014649)	TTS (NM_014649)	-18016	NR_027064								
11154	chr1	86899671	86900230	+	0	NA	intron (NM_203341, intron 2 of 3)	SVA_D|Retroposon|SVA	14176	NM_004261	9403		NM_004261	ENSG00000183291	SELENOF	SEP15	selenoprotein F	protein-coding
212616	chr7	129223371	129223530	+	0	NA	Intergenic	Intergenic	-1580	NM_015328	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
2774	chr1	10793871	10794400	+	0	NA	intron (NM_017766, intron 1 of 15)	CpG	2511	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
131286	chr2	96101851	96102500	+	0	NA	Intergenic	Intergenic	14396	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
127253	chr2	38695851	38696150	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	29886	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
154238	chr22	31592221	31592480	+	0	NA	intron (NM_001007467, intron 15 of 32)	SVA_F|Retroposon|SVA	29181	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
184068	chr5	93570421	93571280	+	0	NA	non-coding (NR_109825, exon 1 of 9)	non-coding (NR_109825, exon 1 of 9)	493	NR_109825	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
142191	chr20	2914371	2914530	+	0	NA	intron (NM_001385320, intron 2 of 21)	(TG)n|Simple_repeat|Simple_repeat	40969	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
220278	chr8	97788071	97788230	+	0	NA	intron (NM_018407, intron 1 of 6)	intron (NM_018407, intron 1 of 6)	12362	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
199547	chr6	118816701	118816900	+	0	NA	intron (NM_001378366, intron 10 of 10)	intron (NM_001378366, intron 10 of 10)	34092	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
93223	chr17	17833871	17834780	+	0	NA	intron (NM_001005291, intron 1 of 19)	AluJr|SINE|Alu	2661	NM_001005291	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
207499	chr7	44753251	44753550	+	0	NA	intron (NM_031449, intron 1 of 18)	AluJr|SINE|Alu	-2788	NM_174929	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
12046	chr1	98051121	98051430	+	0	NA	Intergenic	Intergenic	-1582	NR_046105	400765		NM_001001688	ENSG00000225206	MIR137HG	-	MIR137 host gene	ncRNA
216291	chr8	12589601	12590000	+	0	NA	intron (NR_047662, intron 6 of 8)	MIRc|SINE|MIR	75811	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
56814	chr12	120217071	120217230	+	0	NA	intron (NM_001080855, intron 6 of 11)	intron (NM_001080855, intron 6 of 11)	15859	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
153758	chr22	29412401	29413080	+	0	NA	Intergenic	Intergenic	-24157	NM_145730	162		NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2|KIDAR	adaptor related protein complex 1 subunit beta 1	protein-coding
137497	chr2	197151051	197151450	+	0	NA	intron (NM_153697, intron 2 of 9)	L1MEd|LINE|L1	-46741	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
221966	chr8	129980671	129981100	+	0	NA	intron (NM_001353269, intron 1 of 10)	AluJb|SINE|Alu	27568	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
32807	chr10	109912251	109912550	+	0	NA	intron (NM_001324132, intron 1 of 19)	intron (NM_001324132, intron 1 of 19)	10846	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
56037	chr12	110445471	110446550	+	0	NA	intron (NM_001287222, intron 1 of 6)	AluSx|SINE|Alu	4327	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
48475	chr12	9770201	9770400	+	0	NA	Intergenic	L1MEb|LINE|L1	-9399	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
137836	chr2	200523401	200523800	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-2542	NM_001160033	151246		NM_152524	ENSG00000163535	SGO2	SGOL2|TRIPIN	shugoshin 2	protein-coding
141638	chr2	241720851	241721350	+	0	NA	3' UTR (NM_001330161, exon 8 of 8)	3' UTR (NM_001330161, exon 8 of 8)	-13530	NM_001287249	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
176344	chr4	88319871	88320030	+	0	NA	intron (NR_134237, intron 3 of 3)	LTR49|LTR|ERV1	35020	NR_134236	105369192		NR_134236	ENSG00000246375	PPM1K-DT	-	PPM1K divergent transcript	ncRNA
215926	chr8	8285751	8286350	+	0	NA	Intergenic	Intergenic	57480	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
148435	chr20	63971351	63971880	+	0	NA	Intergenic	AluY|SINE|Alu	-1685	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
658	chr1	1358801	1360700	+	0	NA	promoter-TSS (NM_001282584)	promoter-TSS (NM_001282584)	-956	NM_001282584	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
52124	chr12	54201051	54202080	+	0	NA	Intergenic	Intergenic	-12571	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
132442	chr2	105845501	105845900	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-6147	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
48323	chr12	9026401	9026630	+	0	NA	Intergenic	L1ME3G|LINE|L1	36890	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
45306	chr11	118151471	118151630	+	0	NA	intron (NM_174934, intron 1 of 4)	intron (NM_174934, intron 1 of 4)	1273	NM_001142348	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
80259	chr16	2220921	2221180	+	0	NA	Intergenic	AluYj4|SINE|Alu	-2438	NM_001288776	1877		NM_004424	ENSG00000167967	E4F1	E4F	E4F transcription factor 1	protein-coding
137511	chr2	197183501	197183900	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-14291	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
15705	chr1	151004471	151004930	+	0	NA	intron (NM_001376670, intron 1 of 8)	AluSz|SINE|Alu	2202	NM_001040217	55793		NM_018379	ENSG00000143409	MINDY1	FAM63A|MINDY-1	MINDY lysine 48 deubiquitinase 1	protein-coding
223807	chr8	144796971	144797330	+	0	NA	Intergenic	Intergenic	-1763	NM_001317936	340385		NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
62231	chr13	98523371	98523900	+	0	NA	intron (NM_001286649, intron 1 of 9)	MLT1H|LTR|ERVL-MaLR	-1510	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
39985	chr11	62617301	62617500	+	0	NA	intron (NM_001288722, intron 2 of 4)	intron (NM_001288722, intron 2 of 4)	4143	NM_000327	6094		NM_000327	ENSG00000149489	ROM1	ROM|ROSP1|RP7|TSPAN23	retinal outer segment membrane protein 1	protein-coding
34639	chr10	133317351	133317830	+	0	NA	Intergenic	Intergenic	-5253	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
180433	chr5	10447571	10447730	+	0	NA	intron (NM_031916, intron 1 of 4)	AluJr|SINE|Alu	5771	NM_031916	83853		NM_031916	ENSG00000145491	ROPN1L	ASP|LINC01513|RSPH11|TCONS_00009352	rhophilin associated tail protein 1 like	protein-coding
205842	chr7	24906001	24906330	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	-13544	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
234181	chrX	11786901	11787130	+	0	NA	Intergenic	Intergenic	27368	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
9305	chr1	46492271	46492430	+	0	NA	intron (NM_172225, intron 2 of 5)	intron (NM_172225, intron 2 of 5)	2514	NM_172225	127343		NM_147192	ENSG00000197587	DMBX1	Atx|MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
71508	chr14	106061601	106062600	+	0	NA	Intergenic	Intergenic	-89831	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
10724	chr1	75795251	75795950	+	0	NA	TTS (NR_073562)	TTS (NR_073562)	-1282	NM_002440	4438		NM_002440	ENSG00000057468	MSH4	ASG|POF20|SPGF2	mutS homolog 4	protein-coding
156506	chr22	41305071	41305230	+	0	NA	intron (NM_017590, intron 1 of 22)	AluSc|SINE|Alu	-2781	NM_001317930	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
80779	chr16	3192001	3192430	+	0	NA	intron (NM_001370639, intron 3 of 3)	AluY|SINE|Alu	3093	NM_012360	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
185216	chr5	120465421	120465700	+	0	NA	promoter-TSS (NM_001308087)	promoter-TSS (NM_001308087)	-71	NM_001308087	51334		NM_016644	ENSG00000184838	PRR16	DSC54|LARGEN	proline rich 16	protein-coding
199792	chr6	126643421	126643550	+	0	NA	Intergenic	(GGC)n|Simple_repeat|Simple_repeat	158854	NR_030316	693173		NR_030316	ENSG00000207632	MIR588	MIRN588|hsa-mir-588	microRNA 588	ncRNA
132711	chr2	109034421	109034830	+	0	NA	Intergenic	Intergenic	-45405	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
81933	chr16	11786071	11786730	+	0	NA	intron (NM_014153, intron 1 of 22)	intron (NM_014153, intron 1 of 22)	10858	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
106368	chr18	13276401	13277030	+	0	NA	promoter-TSS (NM_001378099)	promoter-TSS (NM_001378099)	-647	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
4244	chr1	19593471	19594180	+	0	NA	intron (NR_135054, intron 1 of 1)	AluY|SINE|Alu	3007	NR_135054	105378614		NR_135054	ENSG00000235185	MICOS10-DT	-	MICOS10 divergent transcript	ncRNA
212962	chr7	130957901	130958900	+	0	NA	intron (NR_109853, intron 4 of 5)	AluSx|SINE|Alu	44936	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
25490	chr10	7027321	7027580	+	0	NA	Intergenic	Intergenic	159334	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
117167	chr19	19342571	19343330	+	0	NA	intron (NM_015329, intron 9 of 18)	intron (NM_015329, intron 9 of 18)	22121	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
177426	chr4	112512021	112512280	+	0	NA	Intergenic	Intergenic	-3229	NR_161159	105377372		NR_161159		NEUROG2-AS1	-	NEUROG2 and ZGRF1 antisense RNA 1	ncRNA
100187	chr17	58662221	58662680	+	0	NA	intron (NM_198393, intron 1 of 32)	(CA)n|Simple_repeat|Simple_repeat	29595	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
230189	chr9	127798451	127798950	+	0	NA	Intergenic	L1ME4b|LINE|L1	-4158	NM_001288803	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
115974	chr19	17025821	17027550	+	0	NA	non-coding (NR_165644, exon 1 of 15)	non-coding (NR_165644, exon 1 of 15)	125	NR_165644	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
82905	chr16	21640451	21641000	+	0	NA	3' UTR (NM_005849, exon 6 of 6).2	3' UTR (NM_005849, exon 6 of 6).2	11883	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
131663	chr2	97662421	97663100	+	0	NA	intron (NM_005735, intron 1 of 10)	intron (NM_005735, intron 1 of 10)	1284	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
3162	chr1	12614951	12615050	+	0	NA	intron (NM_004753, intron 1 of 5)	intron (NM_004753, intron 1 of 5)	1789	NM_001319225	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
88730	chr16	86038801	86039250	+	0	NA	Intergenic	Intergenic	120678	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
223034	chr8	143345051	143345350	+	0	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	-10320	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
172878	chr4	3372671	3373180	+	0	NA	intron (NM_198227, intron 1 of 15)	intron (NM_198227, intron 1 of 15)	2727	NM_198227	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
208664	chr7	73154301	73155600	+	0	NA	promoter-TSS (NR_003580)	promoter-TSS (NR_003580)	21	NR_002206	2970		NR_002206	ENSG00000290871	GTF2IP1	WBSCR7	general transcription factor IIi pseudogene 1	pseudo
17297	chr1	156443101	156443630	+	0	NA	Intergenic	Intergenic	-13817	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
25465	chr10	6647501	6648250	+	0	NA	Intergenic	Intergenic	12805	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
89887	chr16	89659401	89659700	+	0	NA	intron (NM_001271910, intron 2 of 2)	AluSz|SINE|Alu	1482	NR_073515	124045		NM_153025	ENSG00000167523	SPATA33	C16orf55	spermatogenesis associated 33	protein-coding
69305	chr14	93132421	93132780	+	0	NA	Intergenic	MIRb|SINE|MIR	-16675	NM_014216	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
213354	chr7	135575221	135575480	+	0	NA	intron (NM_001329434, intron 3 of 42)	L2c|LINE|L2	17433	NM_015135	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
125671	chr2	20223721	20224250	+	0	NA	intron (NM_001006946, intron 2 of 5)	CpG	1145	NM_002997	6382		NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
238501	chrX	153641201	153641400	+	0	NA	Intergenic	Intergenic	-1141	NM_001395	1852		NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
223301	chr8	143798051	143798750	+	0	NA	intron (NM_182706, intron 24 of 36).2	L1MC5|LINE|L1	14642	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
90540	chr17	1492821	1493980	+	0	NA	promoter-TSS (NM_001080779)	promoter-TSS (NM_001080779)	-714	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
184172	chr5	95808101	95809330	+	0	NA	Intergenic	Intergenic	14011	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
130566	chr2	85751921	85752800	+	0	NA	Intergenic	MIR|SINE|MIR	-1631	NM_032827	84913		NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
76062	chr15	72343751	72344050	+	0	NA	3' UTR (NM_001318825, exon 14 of 14)	3' UTR (NM_001318825, exon 14 of 14)	-23743	NM_052840	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
1159	chr1	2204441	2206130	+	0	NA	intron (NM_001282670, intron 2 of 7)	CpG	2448	NM_001146310	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
24125	chr1	235783201	235783500	+	0	NA	intron (NM_001301365, intron 14 of 52)	intron (NM_001301365, intron 14 of 52)	69710	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
55849	chr12	109109801	109110200	+	0	NA	3' UTR (NM_003362, exon 6 of 6)	3' UTR (NM_003362, exon 6 of 6)	-6587	NM_001093	32		NM_001093	ENSG00000076555	ACACB	ACACbeta|ACC-beta|ACC2|ACCB|ACCbeta|HACC275	acetyl-CoA carboxylase beta	protein-coding
51841	chr12	53462651	53463200	+	0	NA	intron (NM_001128914, intron 8 of 12)	intron (NM_001128914, intron 8 of 12)	-1543	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
30345	chr10	77644051	77644230	+	0	NA	Intergenic	Intergenic	-6332	NM_001322836	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
173086	chr4	6257401	6257600	+	0	NA	Intergenic	Intergenic	-12350	NM_001145853	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
54876	chr12	95653151	95653250	+	0	NA	intron (NR_077225, intron 1 of 4)	AluJb|SINE|Alu	3945	NR_077225	100132594		NR_077225	ENSG00000293270	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
123237	chr19	52962101	52963400	+	0	NA	5' UTR (NM_001202457, exon 1 of 4)	5' UTR (NM_001202457, exon 1 of 4)	131	NM_001031665	125893		NM_001031665	ENSG00000180257	ZNF816	ZNF816A	zinc finger protein 816	protein-coding
38718	chr11	46679171	46680330	+	0	NA	exon (NM_004308, exon 11 of 13)	exon (NM_004308, exon 11 of 13)	20869	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
193130	chr6	29014721	29015100	+	0	NA	Intergenic	Intergenic	-9298	NM_001010877	282890		NM_001010877	ENSG00000197935	ZNF311	zf31	zinc finger protein 311	protein-coding
149187	chr21	22779321	22779400	+	0	NA	Intergenic	L1MEf|LINE|L1	-299924	NR_106746	102466967		NR_106746	ENSG00000275469	MIR6130	hsa-mir-6130	microRNA 6130	ncRNA
124757	chr2	6928551	6928850	+	0	NA	intron (NM_001349184, intron 1 of 8)	intron (NM_001349184, intron 1 of 8)	-4384	NM_001349182	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
221612	chr8	125604521	125605030	+	0	NA	Intergenic	Intergenic	172566	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
57565	chr12	122225151	122226880	+	0	NA	promoter-TSS (NM_001371333)	promoter-TSS (NM_001371333)	37	NM_001371333	56616		NM_019887	ENSG00000184047	DIABLO	DFNA64|SMAC	diablo IAP-binding mitochondrial protein	protein-coding
175775	chr4	77788471	77788630	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluSx3|SINE|Alu	30514	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
112069	chr19	5206001	5206400	+	0	NA	3' UTR (NM_130855, exon 30 of 30)	3' UTR (NM_130855, exon 30 of 30)	134612	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
98961	chr17	48671421	48672000	+	0	NA	Intergenic	Intergenic	-39151	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
237206	chrX	108089701	108089900	+	0	NA	intron (NM_170750, intron 1 of 4)	AluSq|SINE|Alu	1742	NM_002814	5716		NM_002814	ENSG00000101843	PSMD10	dJ889N15.2|p28|p28(GANK)	proteasome 26S subunit, non-ATPase 10	protein-coding
214780	chr7	151114701	151116050	+	0	NA	exon (NM_001308305, exon 1 of 9)	exon (NM_001308305, exon 1 of 9)	737	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
63485	chr13	114166371	114166730	+	0	NA	Intergenic	Intergenic	-33927	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
162440	chr3	48442601	48443680	+	0	NA	intron (NM_001329417, intron 3 of 3)	AluSz|SINE|Alu	2883	NM_001329417	51372		NM_015933	ENSG00000232112	TMA7	CCDC72|HSPC016	translation machinery associated 7 homolog	protein-coding
51148	chr12	50127271	50127700	+	0	NA	Intergenic	AluJr4|SINE|Alu	15249	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
57590	chr12	122413951	122414450	+	0	NA	intron (NM_001247997, intron 1 of 25)	AluJo|SINE|Alu	8369	NM_001247997	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
208763	chr7	73538801	73539000	+	0	NA	intron (NM_001197244, intron 3 of 4)	MIRb|SINE|MIR	-16607	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
131764	chr2	98471671	98471830	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	25740	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
228682	chr9	107486801	107487000	+	0	NA	intron (NM_004235, intron 4 of 4)	intron (NM_004235, intron 4 of 4)	2869	NM_004235	9314		NM_004235	ENSG00000136826	KLF4	EZF|GKLF	KLF transcription factor 4	protein-coding
202681	chr6	158794751	158795050	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-23079	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
144195	chr20	34298321	34298800	+	0	NA	intron (NM_001161766, intron 1 of 9)	LTR13|LTR|ERVK	4430	NM_001322086	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
112363	chr19	5968901	5969530	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	8925	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
190856	chr6	1771371	1771730	+	0	NA	intron (NM_001253846, intron 7 of 10)	intron (NM_001253846, intron 7 of 10)	161635	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
139970	chr2	230879101	230879300	+	0	NA	TTS (NM_001012516)	TTS (NM_001012516)	-7346	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
74679	chr15	62058921	62059180	+	0	NA	intron (NM_017684, intron 1 of 82)	MER33|DNA|hAT-Charlie	1397	NM_017684	54832		NM_017684	ENSG00000129003	VPS13C	BLTP5C|PARK23	vacuolar protein sorting 13 homolog C	protein-coding
239018	chrY	2937251	2937350	+	0	NA	intron (NM_001369710, intron 1 of 4)	AluSq|SINE|Alu	1919	NM_001369702	7544		NM_003411	ENSG00000067646	ZFY	ZNF911	zinc finger protein Y-linked	protein-coding
75646	chr15	67303721	67303980	+	0	NA	intron (NM_001322475, intron 3 of 17)	intron (NM_001322475, intron 3 of 17)	-48652	NM_001271885	79719		NM_024666	ENSG00000103591	AAGAB	KPPP1|PPKP1|PPKP1A|p34	alpha and gamma adaptin binding protein	protein-coding
10212	chr1	62407401	62407700	+	0	NA	Intergenic	Intergenic	-28754	NM_001017415	7398		NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
97504	chr17	43909101	43909300	+	0	NA	intron (NM_001278370, intron 1 of 12)	AluSp|SINE|Alu	511	NM_001278371	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
93706	chr17	19457321	19457580	+	0	NA	Intergenic	Intergenic	46218	NM_007148	7732		NM_007148	ENSG00000128482	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
23348	chr1	228143721	228144700	+	0	NA	promoter-TSS (NM_001159391)	promoter-TSS (NM_001159391)	-486	NM_001159391	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
107085	chr18	35030401	35031150	+	0	NA	intron (NM_001143826, intron 2 of 7)	L2a|LINE|L2	-10638	NR_046177	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
233728	chrX	1359021	1359480	+	0	NA	intron (NM_001267713, intron 6 of 9).2	MIRb|SINE|MIR	22465	NM_002183	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
48093	chr12	7350551	7350650	+	0	NA	Intergenic	Intergenic	46268	NM_001080454	341392		NM_001080454	ENSG00000215009	ACSM4	-	acyl-CoA synthetase medium chain family member 4	protein-coding
19551	chr1	179027501	179027700	+	0	NA	intron (NM_001324311, intron 1 of 7)	intron (NM_001324311, intron 1 of 7)	1476	NM_001324311	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
164477	chr3	59985601	59986300	+	0	NA	intron (NR_135491, intron 4 of 6)	GA-rich|Low_complexity|Low_complexity	94959	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
110065	chr19	1493521	1494230	+	0	NA	intron (NM_138393, intron 1 of 4)	AluSx|SINE|Alu	2694	NM_138393	92840		NM_138393	ENSG00000115255	REEP6	C19orf32|DP1L1|REEP6.1|REEP6.2|RP77|TB1|TB2L1|Yip2f	receptor accessory protein 6	protein-coding
96155	chr17	39682121	39682750	+	0	NA	intron (NM_001291726, intron 2 of 6)	LTR54B|LTR|ERV1	5622	NM_033419	93210		NM_033419	ENSG00000161395	PGAP3	AGLA546|CAB2|PERLD1|PP1498|hCOS16	post-GPI attachment to proteins phospholipase 3	protein-coding
187190	chr5	140658201	140658400	+	0	NA	intron (NM_006083, intron 10 of 19)	AluSx4|SINE|Alu	-6499	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
70194	chr14	100526771	100526950	+	0	NA	intron (NM_024515, intron 5 of 6)	(ACC)n|Simple_repeat|Simple_repeat	21267	NM_001385103	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
73040	chr15	40862321	40862780	+	0	NA	Intergenic	Intergenic	11684	NM_133639	171177		NM_133639	ENSG00000104140	RHOV	ARHV|CHP|WRCH2	ras homolog family member V	protein-coding
106396	chr18	13415521	13415780	+	0	NA	intron (NM_001378099, intron 3 of 6)	intron (NM_001378099, intron 3 of 6)	11884	NR_040031	100288122		NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
115038	chr19	14114801	14115230	+	0	NA	promoter-TSS (NM_207518)	promoter-TSS (NM_207518)	-824	NM_207518	5566		NM_002730	ENSG00000072062	PRKACA	CAFD1|PKACA|PPNAD4	protein kinase cAMP-activated catalytic subunit alpha	protein-coding
178112	chr4	141210271	141210430	+	0	NA	Intergenic	L1ME3F|LINE|L1	-10545	NM_014487	27309		NM_014487	ENSG00000109445	ZNF330	HSA6591|NOA36	zinc finger protein 330	protein-coding
23702	chr1	231614221	231614480	+	0	NA	intron (NR_028398, intron 3 of 10)	THE1C|LTR|ERVL-MaLR	-2260	NR_034037	100287814		NR_034037	ENSG00000229228	LINC00582	SMILO	long intergenic non-protein coding RNA 582	ncRNA
113702	chr19	10423651	10424800	+	0	NA	intron (NM_001111307, intron 1 of 14)	intron (NM_001111307, intron 1 of 14)	3687	NM_001111307	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
103425	chr17	78249101	78249300	+	0	NA	intron (NR_164160, intron 1 of 1)	intron (NR_164160, intron 1 of 1)	884	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
5803	chr1	26574801	26575000	+	0	NA	3' UTR (NM_002953, exon 22 of 22)	3' UTR (NM_002953, exon 22 of 22)	20358	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
217809	chr8	33632501	33632930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-32609	NM_001305115	78986		NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding
66478	chr14	61590001	61590200	+	0	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-19447	NR_110416	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
232185	chr9	134188121	134188580	+	0	NA	Intergenic	Intergenic	-23786	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
18205	chr1	160948421	160949130	+	0	NA	non-coding (NR_110695, exon 6 of 6)	non-coding (NR_110695, exon 6 of 6)	6034	NM_080878	142683		NM_080878	ENSG00000158764	ITLN2	HL-2|HL2	intelectin 2	protein-coding
69456	chr14	94768271	94768430	+	0	NA	3' UTR (NM_173849, exon 3 of 3)	3' UTR (NM_173849, exon 3 of 3)	1763	NM_173849	145258		NM_173849	ENSG00000133937	GSC	GSC1|SAMS	goosecoid homeobox	protein-coding
83528	chr16	27469021	27469480	+	0	NA	intron (NM_001520, intron 32 of 36)	intron (NM_001520, intron 32 of 36)	-15857	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
125358	chr2	11092351	11092730	+	0	NA	Intergenic	L1MB7|LINE|L1	39636	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
184404	chr5	98911971	98912130	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-16512	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
129720	chr2	70897751	70898050	+	0	NA	Intergenic	Intergenic	-2676	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
126523	chr2	28465351	28465650	+	0	NA	Intergenic	Intergenic	-30560	NM_153021	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
147893	chr20	62881471	62881830	+	0	NA	exon (NM_033081, exon 16 of 16)	exon (NM_033081, exon 16 of 16)	1253	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
67088	chr14	68261001	68261400	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	367587	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
186706	chr5	138790801	138791200	+	0	NA	intron (NM_001290307, intron 3 of 18)	intron (NM_001290307, intron 3 of 18)	-37076	NR_134244	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
171182	chr3	195675771	195675930	+	0	NA	intron (NR_003265, intron 10 of 14)	AluYj4|SINE|Alu	-12648	NR_122105	440993		NM_001013714		MIR570HG	LINC00969	MIR570 host gene	ncRNA
163101	chr3	50109901	50110650	+	0	NA	intron (NR_036627, intron 14 of 23)	intron (NR_036627, intron 14 of 23)	-9287	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
14835	chr1	146327601	146327930	+	0	NA	Intergenic	Intergenic	17142	NM_001368128	105371242		NM_001368128	ENSG00000270339	PPIAL4H	-	peptidylprolyl isomerase A like 4H	protein-coding
130598	chr2	85885151	85885250	+	0	NA	intron (NM_001354229, intron 1 of 7)	intron (NM_001354229, intron 1 of 7)	2349	NM_001354238	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
156887	chr22	42150701	42151030	+	0	NA	Intergenic	Intergenic	-6311	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
123010	chr19	51094451	51095100	+	0	NA	Intergenic	Intergenic	-10565	NM_001311182	43847		NM_022046	ENSG00000129437	KLK14	KLK-L6	kallikrein related peptidase 14	protein-coding
231537	chr9	131449201	131449400	+	0	NA	intron (NM_013318, intron 9 of 31)	L1ME2z|LINE|L1	-36365	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
101539	chr17	67961401	67961600	+	0	NA	intron (NM_182641, intron 24 of 27)	intron (NM_182641, intron 24 of 27)	32106	NM_181656	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
22387	chr1	218350251	218350630	+	0	NA	intron (NM_003238, intron 1 of 6)	MER20|DNA|hAT-Charlie	-4762	NR_046268	728463		NR_046268		TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
223978	chr9	2025901	2026100	+	0	NA	intron (NM_001289396, intron 1 of 33)	intron (NM_001289396, intron 1 of 33)	4055	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
210736	chr7	100629221	100629930	+	0	NA	intron (NM_003227, intron 9 of 17)	intron (NM_003227, intron 9 of 17)	4075	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
183123	chr5	74771871	74772230	+	0	NA	intron (NM_001271665, intron 4 of 4)	intron (NM_001271665, intron 4 of 4)	-4679	NM_170681	84340		NM_032380	ENSG00000164347	GFM2	EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2	GTP dependent ribosome recycling factor mitochondrial 2	protein-coding
91050	chr17	2922521	2922980	+	0	NA	intron (NM_001100398, intron 3 of 23)	intron (NM_001100398, intron 3 of 23)	43145	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
27633	chr10	32950171	32950330	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	7644	NM_133376	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
11722	chr1	91880221	91880480	+	0	NA	intron (NM_001195684, intron 2 of 17)	AluY|SINE|Alu	5801	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
137505	chr2	197164221	197164680	+	0	NA	intron (NM_153697, intron 2 of 9)	CpG	-33541	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
20077	chr1	186304951	186305350	+	0	NA	intron (NM_005807, intron 6 of 12)	intron (NM_005807, intron 6 of 12)	8871	NM_005807	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
18865	chr1	167933301	167933500	+	0	NA	intron (NM_001143674, intron 2 of 5)	AluSx1|SINE|Alu	2596	NR_026550	25874		NM_015415	ENSG00000143158	MPC2	BRP44|SLC54A2	mitochondrial pyruvate carrier 2	protein-coding
235238	chrX	41439801	41440290	+	0	NA	Intergenic	AluSx|SINE|Alu	-7298	NM_001378477	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
120985	chr19	45732551	45733800	+	0	NA	promoter-TSS (NM_001329633)	promoter-TSS (NM_001329633)	2	NM_001329633	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
5406	chr1	25521751	25522050	+	0	NA	Intergenic	Intergenic	-21706	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
8442	chr1	40665121	40666500	+	0	NA	promoter-TSS (NM_014747)	promoter-TSS (NM_014747)	-128	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
59457	chr13	25977201	25977400	+	0	NA	intron (NM_016529, intron 35 of 36)	intron (NM_016529, intron 35 of 36)	74716	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
212866	chr7	130862771	130862930	+	0	NA	Intergenic	L1MA4|LINE|L1	13960	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
185883	chr5	132687671	132688700	+	0	NA	Intergenic	Intergenic	-5556	NR_134248	105379176		NR_134248		LOC105379176	-	uncharacterized LOC105379176	ncRNA
182414	chr5	61348001	61348400	+	0	NA	intron (NM_020928, intron 1 of 13)	AluY|SINE|Alu	15942	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
177782	chr4	122914301	122914550	+	0	NA	intron (NM_198041, intron 2 of 4)	intron (NM_198041, intron 2 of 4)	8172	NM_007083	11162		NM_007083	ENSG00000170917	NUDT6	ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1	nudix hydrolase 6	protein-coding
188808	chr5	158513351	158513850	+	0	NA	Intergenic	Intergenic	-103827	NR_109888	101927697		NR_109888	ENSG00000276778	LINC02227	-	long intergenic non-protein coding RNA 2227	ncRNA
18890	chr1	168228801	168229380	+	0	NA	intron (NM_199344, intron 1 of 7)	intron (NM_199344, intron 1 of 7)	3086	NM_199344	375035		NM_199344	ENSG00000213064	SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
197378	chr6	73484021	73484280	+	0	NA	intron (NM_133645, intron 10 of 12)	intron (NM_133645, intron 10 of 12)	22413	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
73531	chr15	43820221	43820480	+	0	NA	intron (NM_005926, intron 1 of 8)	intron (NM_005926, intron 1 of 8)	4340	NM_005926	4236		NM_005926	ENSG00000140259	MFAP1	AMP	microfibril associated protein 1	protein-coding
155181	chr22	37768251	37768630	+	0	NA	intron (NM_001039141, intron 19 of 23)	intron (NM_001039141, intron 19 of 23)	22206	NM_138632	11078		NM_007032	ENSG00000100106	TRIOBP	DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
230265	chr9	127913701	127914150	+	0	NA	intron (NM_175040, intron 2 of 4)	intron (NM_175040, intron 2 of 4)	3101	NM_175040	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
124328	chr19	58184771	58185030	+	0	NA	intron (NM_133502, intron 2 of 7)	AluY|SINE|Alu	1839	NM_133502	10782		NM_016324	ENSG00000171606	ZNF274	HFB101|ZF2|ZKSCAN19|ZSCAN51	zinc finger protein 274	protein-coding
211534	chr7	105382751	105383050	+	0	NA	intron (NM_001350742, intron 2 of 16)	L1MD2|LINE|L1	6021	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
143820	chr20	32480401	32480900	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	2840	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
8516	chr1	40979201	40981150	+	0	NA	intron (NR_125440, intron 1 of 17)	CpG	479	NM_001905	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
70660	chr14	103056801	103058300	+	0	NA	promoter-TSS (NM_006035)	promoter-TSS (NM_006035)	-1	NM_006035	9578		NM_006035	ENSG00000198752	CDC42BPB	CHOCNS|MRCKB	CDC42 binding protein kinase beta	protein-coding
37477	chr11	18372451	18372550	+	0	NA	Intergenic	AluJb|SINE|Alu	-15287	NR_036116	100423016		NR_036116	ENSG00000264603	MIR3159	-	microRNA 3159	ncRNA
181461	chr5	41902121	41902380	+	0	NA	Intergenic	AluSx|SINE|Alu	-2094	NM_175921	285636		NM_175921	ENSG00000205765	RIMOC1	C5orf51	RAB7A interacting MON1-CCZ1 complex subunit 1	protein-coding
119218	chr19	39458171	39458330	+	0	NA	intron (NM_001130825, intron 4 of 28)	(CCA)n|Simple_repeat|Simple_repeat	-9972	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
52752	chr12	56648101	56648300	+	0	NA	Intergenic	AluSp|SINE|Alu	-2216	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
159298	chr3	12989471	12990030	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-2649	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
103053	chr17	77182071	77182830	+	0	NA	intron (NM_001039573, intron 3 of 17)	intron (NM_001039573, intron 3 of 17)	-2763	NM_001144001	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
167930	chr3	136181801	136182000	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSx1|SINE|Alu	12568	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
54689	chr12	93414421	93414900	+	0	NA	intron (NM_003348, intron 1 of 3)	L2a|LINE|L2	27287	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
59935	chr13	31150551	31150850	+	0	NA	intron (NM_001286503, intron 7 of 16)	intron (NM_001286503, intron 7 of 16)	11204	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
101300	chr17	66441251	66441550	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-24546	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
31859	chr10	99995321	99995580	+	0	NA	intron (NM_015221, intron 1 of 16)	L2|LINE|L2	14497	NM_015221	23268		NM_015221	ENSG00000107554	DNMBP	ARHGEF36|CTRCT48|TUBA	dynamin binding protein	protein-coding
24977	chr10	3065501	3065730	+	0	NA	non-coding (NR_160682, exon 2 of 2)	non-coding (NR_160682, exon 2 of 2)	1318	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
35851	chr11	2316551	2316950	+	0	NA	intron (NM_139022, intron 8 of 9)	intron (NM_139022, intron 8 of 9)	-13610	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
169849	chr3	177189221	177189480	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluSx|SINE|Alu	7128	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
5096	chr1	24799701	24800280	+	0	NA	intron (NM_013943, intron 2 of 5)	SVA_F|Retroposon|SVA	54543	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
96654	chr17	40622101	40622900	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	25318	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
206893	chr7	37725521	37725980	+	0	NA	intron (NM_001381946, intron 2 of 2)	intron (NM_001381946, intron 2 of 2)	41984	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
70695	chr14	103124371	103124530	+	0	NA	intron (NM_001371220, intron 1 of 12)	intron (NM_001371220, intron 1 of 12)	989	NM_006291	7127		NM_006291	ENSG00000185215	TNFAIP2	B94|EXOC3L3	TNF alpha induced protein 2	protein-coding
46019	chr11	122556521	122557130	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-98897	NM_001363365	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
36087	chr11	3010701	3010900	+	0	NA	intron (NR_165428, intron 18 of 22)	intron (NR_165428, intron 18 of 22)	-18471	NM_001369375	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
35158	chr11	762351	762650	+	0	NA	intron (NM_006755, intron 4 of 7)	L1ME1|LINE|L1	14987	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
122548	chr19	49651371	49651530	+	0	NA	exon (NM_021228, exon 7 of 11)	exon (NM_021228, exon 7 of 11)	9241	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
107804	chr18	51186621	51187180	+	0	NA	intron (NM_016626, intron 1 of 1)	intron (NM_016626, intron 1 of 1)	10781	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
181790	chr5	50853071	50853550	+	0	NA	Intergenic	Intergenic	116877	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
134639	chr2	144431401	144432530	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-87649	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
204637	chr7	5402571	5403450	+	0	NA	intron (NM_001080495, intron 2 of 29)	MIRb|SINE|MIR	20536	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
153821	chr22	29765401	29765600	+	0	NA	intron (NM_019103, intron 1 of 6)	L2b|LINE|L2	1480	NM_019103	55954		NM_019103	ENSG00000100319	ZMAT5	SNRNP20|U11/U12-20K|ZC3H19	zinc finger matrin-type 5	protein-coding
145180	chr20	38869301	38869650	+	0	NA	intron (NM_001172735, intron 2 of 9)	L1M4|LINE|L1	-56942	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
179412	chr4	184237421	184237880	+	0	NA	Intergenic	LTR106_Mam|LTR|LTR	-19777	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
190602	chr5	181164821	181165950	+	0	NA	Intergenic	Intergenic	10442	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
232269	chr9	134420801	134421000	+	0	NA	intron (NM_001291921, intron 4 of 8)	intron (NM_001291921, intron 4 of 8)	14340	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
24624	chr1	246576251	246576550	+	0	NA	intron (NM_001139459, intron 1 of 8)	Charlie29a|DNA|hAT-Charlie	9944	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
102267	chr17	75285451	75286050	+	0	NA	intron (NM_001126121, intron 4 of 7)	MIR|SINE|MIR	3683	NM_001126121	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
103359	chr17	78112401	78113080	+	0	NA	TTS (NM_007267)	TTS (NM_007267)	16015	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
210113	chr7	98021471	98021930	+	0	NA	Intergenic	Intergenic	-31596	NM_006188	4951		NM_006188	ENSG00000135175	OCM2	OCM|OM	oncomodulin 2	protein-coding
233357	chr9	137458771	137460500	+	0	NA	promoter-TSS (NM_001178064)	promoter-TSS (NM_001178064)	-301	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228557	chr9	101567321	101567600	+	0	NA	Intergenic	Intergenic	27509	NM_147180	5535		NM_147180	ENSG00000188386	PPP3R2	PPP3RL	protein phosphatase 3 regulatory subunit B, beta	protein-coding
94931	chr17	32008611	32009730	+	0	NA	intron (NM_001321350, intron 1 of 14)	L1MD|LINE|L1	1787	NM_001321350	114659		NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
34519	chr10	132637771	132638180	+	0	NA	intron (NM_005539, intron 2 of 15)	L1MC4|LINE|L1	-43300	NM_001321042	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
189036	chr5	169650821	169651980	+	0	NA	intron (NR_156756, intron 1 of 52)	intron (NR_156756, intron 1 of 52)	14125	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
11214	chr1	88866651	88866750	+	0	NA	intron (NM_001514, intron 2 of 6)	AluJb|SINE|Alu	24867	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
215795	chr8	2198551	2198850	+	0	NA	Intergenic	Intergenic	122111	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
44587	chr11	108267571	108267730	+	0	NA	intron (NM_000051, intron 17 of 62)	AluY|SINE|Alu	44121	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
118669	chr19	37594001	37595600	+	0	NA	promoter-TSS (NM_001172226)	promoter-TSS (NM_001172226)	-8	NM_001290314	51276		NM_016536	ENSG00000180479	ZNF571	HSPC059	zinc finger protein 571	protein-coding
74886	chr15	63591201	63591780	+	0	NA	non-coding (NR_046341, exon 16 of 16)	non-coding (NR_046341, exon 16 of 16)	-5897	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
201011	chr6	141309221	141309530	+	0	NA	Intergenic	MER50|LTR|ERV1	625561	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
159266	chr3	12954051	12954350	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	13530	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
111510	chr19	3989751	3990730	+	0	NA	Intergenic	Intergenic	-4777	NM_001961	1938		NM_001961	ENSG00000167658	EEF2	EEF-2|EF-2|EF2|SCA26	eukaryotic translation elongation factor 2	protein-coding
151590	chr21	46661271	46662550	+	0	NA	TTS (NM_001242866)	TTS (NM_001242866)	26236	NM_001242866	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
38178	chr11	36355251	36355550	+	0	NA	intron (NM_001160167, intron 1 of 8)	MIR|SINE|MIR	-20585	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
35396	chr11	1380501	1381950	+	0	NA	Intergenic	L1MB8|LINE|L1	-8709	NR_046331	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
27354	chr10	30703001	30703200	+	0	NA	intron (NR_036438, intron 5 of 9)	AluJr|SINE|Alu	10826	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
190952	chr6	2909951	2910050	+	0	NA	Intergenic	Intergenic	-6691	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
141591	chr2	241622751	241623050	+	0	NA	intron (NM_015963, intron 2 of 5)	AluJb|SINE|Alu	-5399	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
104563	chr17	81344721	81345050	+	0	NA	Intergenic	CpG	-14211	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
135977	chr2	172107601	172108800	+	0	NA	intron (NR_126376, intron 3 of 4)	CpG	5194	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
205979	chr7	26175871	26176030	+	0	NA	intron (NM_004289, intron 1 of 3)	SVA_A|Retroposon|SVA	23752	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
137164	chr2	191108121	191108380	+	0	NA	intron (NM_003151, intron 3 of 23)	AluSx1|SINE|Alu	42744	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
175144	chr4	55409471	55409630	+	0	NA	intron (NR_073070, intron 2 of 6)	MER20|DNA|hAT-Charlie	13593	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
38871	chr11	47348971	47349330	+	0	NA	intron (NM_000256, intron 5 of 33)	intron (NM_000256, intron 5 of 33)	3552	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
71192	chr14	105058251	105058350	+	0	NA	intron (NM_001278694, intron 1 of 4)	AluJr|SINE|Alu	7130	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
208081	chr7	56094271	56094900	+	0	NA	Intergenic	AluSp|SINE|Alu	-1589	NR_047689	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
25562	chr10	7526521	7526780	+	0	NA	Intergenic	Intergenic	93023	NM_032817	80760		NM_030569	ENSG00000123243	ITIH5	ITI-HC5|PP14776	inter-alpha-trypsin inhibitor heavy chain 5	protein-coding
222082	chr8	130353701	130354100	+	0	NA	intron (NM_001362924, intron 3 of 30)	AluYm1|SINE|Alu	-57367	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
118580	chr19	36296771	36297400	+	0	NA	Intergenic	SST1|Satellite|centr	-14258	NR_029389	100134317		NR_029389		LOC100134317	-	uncharacterized LOC100134317	ncRNA
117006	chr19	18905651	18906150	+	0	NA	exon (NM_001330469, exon 5 of 11)	exon (NM_001330469, exon 5 of 11)	-9173	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
64877	chr14	35336571	35336730	+	0	NA	Intergenic	Intergenic	44268	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
42897	chr11	73373221	73374200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2689	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
72596	chr15	35519571	35519900	+	0	NA	3' UTR (NM_001141972, exon 4 of 4)	3' UTR (NM_001141972, exon 4 of 4)	26430	NM_080650	89978		NM_080650	ENSG00000134146	DPH6	ATPBD4	diphthamine biosynthesis 6	protein-coding
141417	chr2	240978151	240978250	+	0	NA	intron (NM_001351305, intron 27 of 31)	intron (NM_001351305, intron 27 of 31)	-10749	NR_033841	200772		NR_033841	ENSG00000233392	UICLM	CROCC2-AS1	up-regulated in colorectal cancer liver metastasis	ncRNA
727	chr1	1440501	1441280	+	0	NA	3' UTR (NM_199121, exon 3 of 3)	3' UTR (NM_199121, exon 3 of 3)	5200	NM_022834	64856		NM_022834	ENSG00000179403	VWA1	HMNMYO|HMNR7|WARP	von Willebrand factor A domain containing 1	protein-coding
111767	chr19	4392671	4393030	+	0	NA	intron (NM_001199943, intron 1 of 8)	AluSx1|SINE|Alu	7697	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
84760	chr16	30978921	30979180	+	0	NA	intron (NM_014712, intron 13 of 18)	intron (NM_014712, intron 13 of 18)	-6157	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
90031	chr16	89900801	89901330	+	0	NA	intron (NM_014972, intron 12 of 17)	intron (NM_014972, intron 12 of 17)	-17797	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
63318	chr13	114002701	114003630	+	0	NA	intron (NM_001320822, intron 18 of 23).2	intron (NM_001320822, intron 18 of 23).2	-29089	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
87022	chr16	68263471	68265730	+	0	NA	promoter-TSS (NM_003983)	promoter-TSS (NM_003983)	74	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
57462	chr12	121993701	121994100	+	0	NA	intron (NM_144668, intron 19 of 21)	SVA_F|Retroposon|SVA	-27984	NM_020993	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
219388	chr8	70473271	70473630	+	0	NA	intron (NR_110653, intron 1 of 3)	MER57B2|LTR|ERV1	2316	NR_110653	101926892		NR_110653	ENSG00000253967	LINC03020	-	long intergenic non-protein coding RNA 3020	ncRNA
125727	chr2	20648401	20648980	+	0	NA	intron (NM_022460, intron 1 of 6)	L2a|LINE|L2	2408	NM_022460	64342		NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
96333	chr17	40038671	40039330	+	0	NA	intron (NM_014815, intron 3 of 25)	intron (NM_014815, intron 3 of 25)	-11355	NR_102369	101340251		NR_102369	ENSG00000238793	SNORD124	-	small nucleolar RNA, C/D box 124	snoRNA
80119	chr16	2033001	2034200	+	0	NA	intron (NM_001252076, intron 1 of 5)	intron (NM_001252076, intron 1 of 5)	306	NM_001252075	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
113445	chr19	9829501	9829900	+	0	NA	intron (NM_024292, intron 4 of 4)	AluSq|SINE|Alu	1782	NM_024292	59286		NM_024292	ENSG00000198258	UBL5	HUB1	ubiquitin like 5	protein-coding
197651	chr6	85323471	85323780	+	0	NA	Intergenic	Intergenic	66561	NR_134634	101928820		NR_134633	ENSG00000234155	LINC02535	-	long intergenic non-protein coding RNA 2535	ncRNA
43872	chr11	88331121	88331580	+	0	NA	intron (NM_148170, intron 2 of 3)	MER21A|LTR|ERVL	6386	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
21299	chr1	204480501	204480700	+	0	NA	intron (NM_001377334, intron 1 of 32)	intron (NM_001377334, intron 1 of 32)	14205	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
25291	chr10	6173051	6173750	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-21138	NR_039698	100628560		NR_039698	ENSG00000283634	MIR3155B	hsa-mir-3155b	microRNA 3155b	ncRNA
202064	chr6	154229421	154230200	+	0	NA	intron (NM_001130700, intron 5 of 11)	L1MB7|LINE|L1	100271	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
84795	chr16	31040901	31041300	+	0	NA	TTS (NM_004604)	TTS (NM_004604)	7542	NM_004604	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
212898	chr7	130889151	130890000	+	0	NA	intron (NR_110472, intron 2 of 3)	AluSx|SINE|Alu	-12036	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
122989	chr19	50819601	50820150	+	0	NA	TTS (NR_038359)	TTS (NR_038359)	2194	NR_038359	284365		NR_038359	ENSG00000293414	LINC01869	-	long intergenic non-protein coding RNA 1869	ncRNA
134701	chr2	144498221	144498550	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-21229	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
208200	chr7	65037771	65039280	+	0	NA	non-coding (NR_033416, exon 1 of 11)	non-coding (NR_033416, exon 1 of 11)	171	NR_033416	643180		NR_033416	ENSG00000290860	CCT6P3	CCT6-3P	chaperonin containing TCP1 subunit 6 pseudogene 3	pseudo
148487	chr20	64057221	64058500	+	0	NA	intron (NM_198723, intron 1 of 10)	intron (NM_198723, intron 1 of 10)	888	NM_198723	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
19976	chr1	184969651	184970150	+	0	NA	intron (NM_052966, intron 1 of 13)	AluJb|SINE|Alu	4608	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
16958	chr1	155935571	155935880	+	0	NA	Intergenic	AluJo|SINE|Alu	-1312	NM_014949	22889		NM_014949	ENSG00000132680	KHDC4	BLOM7|KIAA0907|SNORA80EHG	KH domain containing 4, pre-mRNA splicing factor	protein-coding
63582	chr14	20471201	20471800	+	0	NA	intron (NM_000270, intron 1 of 5)	intron (NM_000270, intron 1 of 5)	2094	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
197901	chr6	89356701	89356900	+	0	NA	Intergenic	Intergenic	-4078	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
105072	chr17	82093971	82094450	+	0	NA	intron (NM_004104, intron 3 of 42)	intron (NM_004104, intron 3 of 42)	4026	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
150943	chr21	44292251	44292750	+	0	NA	intron (NM_000383, intron 9 of 13)	intron (NM_000383, intron 9 of 13)	6624	NM_000383	326		NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
51911	chr12	53677121	53677580	+	0	NA	Intergenic	CpG	-1020	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
95566	chr17	36935901	36936100	+	0	NA	intron (NR_135668, intron 1 of 1)	CpG	661	NR_135670	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
55919	chr12	109805251	109805800	+	0	NA	intron (NM_147204, intron 2 of 13)	intron (NM_147204, intron 2 of 13)	9271	NM_001177431	59341		NM_021625	ENSG00000111199	TRPV4	BCYM3|CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC	transient receptor potential cation channel subfamily V member 4	protein-coding
107210	chr18	36131251	36131830	+	0	NA	intron (NM_001324468, intron 1 of 20)	MER41D|LTR|ERV1	1641	NM_001242879	55250		NM_018255	ENSG00000134759	ELP2	MRT58|SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
157414	chr22	45064551	45065100	+	0	NA	Intergenic	Intergenic	-54820	NM_138415	112885		NM_138415	ENSG00000056487	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
130709	chr2	86722271	86722430	+	0	NA	intron (NM_022780, intron 1 of 8)	intron (NM_022780, intron 1 of 8)	-1228	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
117494	chr19	19819701	19819900	+	0	NA	intron (NM_001099269, intron 1 of 3)	intron (NM_001099269, intron 1 of 3)	1950	NM_001099269	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
62430	chr13	99311121	99311850	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-4086	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
47928	chr12	6790751	6791050	+	0	NA	intron (NM_001382705, intron 1 of 7)	intron (NM_001382705, intron 1 of 7)	1372	NM_001195014	920		NM_000616	ENSG00000010610	CD4	CD4mut|IMD79|Leu-3|OKT4D|T4	CD4 molecule	protein-coding
200707	chr6	137475171	137475350	+	0	NA	Intergenic	Intergenic	19134	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
56944	chr12	120476351	120476850	+	0	NA	intron (NM_001037494, intron 1 of 2)	intron (NM_001037494, intron 1 of 2)	6758	NM_001037494	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
32267	chr10	102064501	102066530	+	0	NA	exon (NM_024747, exon 1 of 1)	exon (NM_024747, exon 1 of 1)	166	NM_024747	79803		NM_024747	ENSG00000166189	HPS6	BLOC2S3	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding
86696	chr16	67532921	67533450	+	0	NA	intron (NM_001193523, intron 1 of 21)	L2|LINE|L2	3796	NM_001193523	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
171354	chr3	196060551	196061250	+	0	NA	intron (NM_001313966, intron 11 of 16)	L1MC1|LINE|L1	21190	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
233965	chrX	2688501	2688700	+	0	NA	Intergenic	AluY|SINE|Alu	-2695	NM_001321369	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
52625	chr12	56268251	56268550	+	0	NA	intron (NM_144576, intron 2 of 4)	AluSx1|SINE|Alu	1074	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
169876	chr3	177357921	177359190	+	0	NA	Intergenic	Intergenic	64113	NR_047465	100820709		NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
168753	chr3	151202651	151203650	+	0	NA	promoter-TSS (NM_013308)	promoter-TSS (NM_013308)	66	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
216403	chr8	17975171	17975700	+	0	NA	intron (NR_148032, intron 23 of 38)	AluSp|SINE|Alu	52447	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
38669	chr11	46392331	46393580	+	0	NA	Intergenic	CpG-4211	-1179	NM_000741	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
159683	chr3	15504801	15505000	+	0	NA	intron (NM_005677, intron 1 of 16)	MLT1B|LTR|ERVL-MaLR	-6028	NM_080538	8292		NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
188977	chr5	163508051	163508430	+	0	NA	intron (NM_013283, intron 1 of 6)	intron (NM_013283, intron 1 of 6)	2621	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
181338	chr5	40406701	40408050	+	0	NA	Intergenic	Intergenic	-272540	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
177850	chr4	128058451	128059000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2587	NM_178043	55132		NM_018078	ENSG00000138709	LARP1B	LARP2	La ribonucleoprotein 1B	protein-coding
80317	chr16	2421921	2422450	+	0	NA	intron (NR_003574, intron 13 of 16)	intron (NR_003574, intron 13 of 16)	-7262	NM_001761	899		NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1|FTDALS5	cyclin F	protein-coding
163115	chr3	50122971	50123600	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-22297	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
67543	chr14	71143321	71143800	+	0	NA	Intergenic	Intergenic	-176916	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
100135	chr17	58428371	58428680	+	0	NA	intron (NM_001080439, intron 5 of 5)	AluY|SINE|Alu	-10991	NM_001305544	54894		NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
77437	chr15	84195671	84196700	+	0	NA	intron (NR_033738, intron 3 of 7)	intron (NR_033738, intron 3 of 7)	4337	NR_033738	440300		NR_033738		LOC440300	-	chondroitin sulfate proteoglycan 4 pseudogene	pseudo
156769	chr22	41861601	41863450	+	0	NA	intron (NR_103834, intron 1 of 21)	intron (NR_103834, intron 1 of 21)	-27860	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
33571	chr10	119466471	119467080	+	0	NA	Intergenic	Intergenic	69758	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
66036	chr14	58292701	58293350	+	0	NA	intron (NR_029434, intron 1 of 4)	intron (NR_029434, intron 1 of 4)	4992	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
146499	chr20	49890571	49890730	+	0	NA	non-coding (NR_048538, exon 14 of 14)	non-coding (NR_048538, exon 14 of 14)	23089	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
195273	chr6	36489621	36489880	+	0	NA	non-coding (NR_104481, exon 4 of 4)	non-coding (NR_104481, exon 4 of 4)	46750	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
168654	chr3	150410701	150411780	+	0	NA	exon (NM_014779, exon 1 of 4)	exon (NM_014779, exon 1 of 4)	2942	NR_130136	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
159784	chr3	16316601	16317000	+	0	NA	3' UTR (NM_015150, exon 10 of 10)	3' UTR (NM_015150, exon 10 of 10)	51588	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
7104	chr1	32112721	32113630	+	0	NA	intron (NM_012316, intron 1 of 13)	AluJr|SINE|Alu	5119	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
77955	chr15	89363621	89363880	+	0	NA	intron (NR_133002, intron 1 of 5)	intron (NR_133002, intron 1 of 5)	1229	NR_133002	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
108830	chr18	79065751	79066100	+	0	NA	Intergenic	Intergenic	-3469	NM_001306085	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
214956	chr7	151838621	151839880	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-24379	NM_001040633	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
143571	chr20	31663751	31664300	+	0	NA	TTS (NM_138578)	TTS (NM_138578)	26113	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
218016	chr8	38468211	38469230	+	0	NA	promoter-TSS (NM_001174065)	promoter-TSS (NM_001174065)	-85	NM_023106	2260		NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
48572	chr12	10287771	10288250	+	0	NA	intron (NM_001351060, intron 2 of 8)	AluY|SINE|Alu	-16436	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
120492	chr19	44759671	44759930	+	0	NA	3' UTR (NM_005178, exon 9 of 9)	3' UTR (NM_005178, exon 9 of 9)	1143	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
9592	chr1	52127401	52127750	+	0	NA	Intergenic	Intergenic	-14514	NM_007324	9372		NM_004799	ENSG00000157077	ZFYVE9	MADHIP|NSP|PPP1R173|SARA|SMADIP	zinc finger FYVE-type containing 9	protein-coding
233851	chrX	1514371	1514530	+	0	NA	intron (NM_178129, intron 1 of 1)	(CCTTT)n|Simple_repeat|Simple_repeat	22735	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
11655	chr1	91804601	91806780	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	80461	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
237333	chrX	118520121	118520380	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	24341	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
168904	chr3	152328901	152329730	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	11675	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
3808	chr1	16748951	16749250	+	0	NA	Intergenic	CpG	8584	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
136091	chr2	173400871	173401030	+	0	NA	Intergenic	Intergenic	46078	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
16241	chr1	153952551	153952650	+	0	NA	exon (NM_181715, exon 8 of 14)	exon (NM_181715, exon 8 of 14)	-5882	NM_014856	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
153570	chr22	26663371	26663530	+	0	NA	intron (NR_033320, intron 2 of 4)	intron (NR_033320, intron 2 of 4)	5968	NR_033319	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
123285	chr19	53546471	53546630	+	0	NA	intron (NM_001317113, intron 2 of 4)	intron (NM_001317113, intron 2 of 4)	7762	NM_001253800	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
105168	chr17	82266001	82266980	+	0	NA	intron (NM_139062, intron 1 of 9)	intron (NM_139062, intron 1 of 9)	7210	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
214606	chr7	150687001	150687430	+	0	NA	intron (NM_015660, intron 2 of 2)	intron (NM_015660, intron 2 of 2)	1509	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
176271	chr4	87042171	87042900	+	0	NA	intron (NM_001313960, intron 1 of 17)	intron (NM_001313960, intron 1 of 17)	35534	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
149135	chr21	17780151	17781080	+	0	NA	intron (NR_038870, intron 2 of 2)	intron (NR_038870, intron 2 of 2)	11894	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
68882	chr14	91327021	91327980	+	0	NA	intron (NM_001080414, intron 10 of 29)	MIRc|SINE|MIR	-73620	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
114100	chr19	11122771	11122930	+	0	NA	intron (NM_001195800, intron 12 of 15)	AluJo|SINE|Alu	9376	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
211086	chr7	102486871	102487030	+	0	NA	intron (NM_001367767, intron 18 of 20)	AluSx|SINE|Alu	-8028	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
183770	chr5	81753071	81753580	+	0	NA	Intergenic	Intergenic	-2072	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
10152	chr1	60978971	60979170	+	0	NA	Intergenic	Intergenic	-8294	NR_110618	100996570		NR_110617	ENSG00000237928	NFIA-AS2	-	NFIA antisense RNA 2	ncRNA
87392	chr16	70478301	70478900	+	0	NA	exon (NM_145059, exon 22 of 24)	exon (NM_145059, exon 22 of 24)	24005	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
52272	chr12	54526871	54527450	+	0	NA	intron (NM_001184976, intron 21 of 30)	intron (NM_001184976, intron 21 of 30)	-22233	NM_001288768	5153		NM_000924	ENSG00000123360	PDE1B	HEL-S-79p|PDE1B1|PDES1B	phosphodiesterase 1B	protein-coding
202408	chr6	157873751	157874150	+	0	NA	intron (NM_016224, intron 3 of 17)	intron (NM_016224, intron 3 of 17)	50704	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
131813	chr2	98610401	98610830	+	0	NA	intron (NM_001330353, intron 2 of 5)	intron (NM_001330353, intron 2 of 5)	2026	NM_001330353	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
45044	chr11	117042401	117042800	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	55828	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
13565	chr1	115928651	115928750	+	0	NA	intron (NR_125970, intron 2 of 4)	AluYa5|SINE|Alu	9324	NR_125969	101928995		NR_125969	ENSG00000228127	LINC01649	-	long intergenic non-protein coding RNA 1649	ncRNA
130631	chr2	86068071	86069050	+	0	NA	intron (NM_015425, intron 13 of 33)	intron (NM_015425, intron 13 of 33)	37326	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
28982	chr10	63259101	63259330	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	10008	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
208814	chr7	73647701	73648580	+	0	NA	Intergenic	CpG	-19691	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
210360	chr7	99578371	99578750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-19707	NM_001195542	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
195540	chr6	37431151	37432000	+	0	NA	Intergenic	L2c|LINE|L2	-1646	NM_015050	23070		NM_015050	ENSG00000137200	CMTR1	FTSJD2|KIAA0082|MTr1|hMTr1	cap methyltransferase 1	protein-coding
207380	chr7	44121671	44122200	+	0	NA	exon (NM_001256879, exon 3 of 12)	exon (NM_001256879, exon 3 of 12)	1573	NM_001256879	5425		NM_006230	ENSG00000106628	POLD2	-	DNA polymerase delta 2, accessory subunit	protein-coding
105196	chr17	82305921	82306500	+	0	NA	Intergenic	Intergenic	11398	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
153327	chr22	24280051	24280750	+	0	NA	intron (NR_103546, intron 2 of 19)	intron (NR_103546, intron 2 of 19)	9569	NM_001254732	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
127748	chr2	43636671	43638030	+	0	NA	promoter-TSS (NM_172069)	promoter-TSS (NM_172069)	90	NM_172069	130271		NM_172069	ENSG00000152527	PLEKHH2	PLEKHH1L	pleckstrin homology, MyTH4 and FERM domain containing H2	protein-coding
47364	chr12	2284801	2285030	+	0	NA	intron (NR_046769, intron 1 of 2)	intron (NR_046769, intron 1 of 2)	15139	NR_046769	100874370		NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
189584	chr5	175531321	175531780	+	0	NA	Intergenic	Intergenic	52990	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
96215	chr17	39771551	39771880	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	6510	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
179741	chr5	231601	232000	+	0	NA	intron (NM_001330758, intron 7 of 12)	intron (NM_001330758, intron 7 of 12)	13480	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
205690	chr7	23206001	23206600	+	0	NA	Intergenic	L1M4b|LINE|L1	24252	NM_001370444	11097		NM_007342	ENSG00000136243	NUP42	CG1|NLP-1|NLP1|NLP_1|NUPL2|UIP1|hCG1	nucleoporin 42	protein-coding
135808	chr2	170126121	170126380	+	0	NA	Intergenic	L1PA7|LINE|L1	-51897	NM_001083615	140469		NM_138995	ENSG00000071909	MYO3B	-	myosin IIIB	protein-coding
153243	chr22	24010401	24011790	+	0	NA	promoter-TSS (NM_001199281)	promoter-TSS (NM_001199281)	-209	NM_012295	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
13590	chr1	116334871	116335030	+	0	NA	Intergenic	Intergenic	-38294	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
190420	chr5	179827621	179828430	+	0	NA	intron (NM_003900, intron 5 of 7).2	intron (NM_003900, intron 5 of 7).2	7120	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
201884	chr6	150867521	150867780	+	0	NA	intron (NR_146720, intron 1 of 28)	L2a|LINE|L2	1164	NM_001350491	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
126158	chr2	26299611	26300580	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	18954	NM_001145168	165082		NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding
138883	chr2	217555071	217555230	+	0	NA	intron (NR_026597, intron 2 of 12)	intron (NR_026597, intron 2 of 12)	201443	NR_026597	729582		NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
45552	chr11	118780021	118781000	+	0	NA	intron (NM_004397, intron 3 of 13)	AluSx|SINE|Alu	10438	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
237039	chrX	103063801	103064350	+	0	NA	promoter-TSS (NM_018476)	promoter-TSS (NM_018476)	96	NM_018476	55859		NM_018476	ENSG00000133169	BEX1	BEX2|HBEX2|HGR74-h	brain expressed X-linked 1	protein-coding
107037	chr18	32107851	32108150	+	0	NA	intron (NM_198128, intron 1 of 4)	AluSx1|SINE|Alu	15394	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
6771	chr1	30749071	30749230	+	0	NA	intron (NM_006762, intron 1 of 7)	L1ME3A|LINE|L1	8624	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
50526	chr12	47838571	47839100	+	0	NA	Intergenic	Intergenic	-18932	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
129645	chr2	70149151	70149450	+	0	NA	TTS (NM_001348758)	TTS (NM_001348758)	-23984	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
132705	chr2	109020151	109020750	+	0	NA	Intergenic	Intergenic	-31230	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
78831	chr15	99732721	99734150	+	0	NA	promoter-TSS (NM_152449)	promoter-TSS (NM_152449)	2	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
156835	chr22	41948501	41948700	+	0	NA	Intergenic	L2a|LINE|L2	-1436	NM_001002876	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
205946	chr7	26096971	26097950	+	0	NA	Intergenic	AluSg|SINE|Alu	-54738	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
98986	chr17	48738371	48738530	+	0	NA	Intergenic	Intergenic	-9700	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
33620	chr10	119608271	119608780	+	0	NA	Intergenic	Intergenic	-11496	NM_003252	7073		NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
28791	chr10	62080871	62081550	+	0	NA	intron (NM_001244638, intron 5 of 6)	intron (NM_001244638, intron 5 of 6)	31853	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
186569	chr5	138479851	138480150	+	0	NA	Intergenic	Intergenic	14521	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
128473	chr2	57720821	57721080	+	0	NA	Intergenic	Intergenic	-186701	NM_001288838	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
213182	chr7	132456471	132456630	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	119920	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
174917	chr4	49109501	49110000	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	123108	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
207234	chr7	43734671	43735130	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-5359	NM_001350924	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
231585	chr9	131529771	131530130	+	0	NA	intron (NM_031432, intron 2 of 6)	intron (NM_031432, intron 2 of 6)	1313	NM_031432	83549		NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
178057	chr4	139950671	139951050	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-177155	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
172582	chr4	2474301	2474500	+	0	NA	intron (NM_001185009, intron 2 of 8)	AluSc8|SINE|Alu	4947	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
38003	chr11	35066821	35067750	+	0	NA	Intergenic	Intergenic	70747	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
79264	chr16	494801	495400	+	0	NA	intron (NM_001370401, intron 6 of 14)	AluJb|SINE|Alu	20176	NM_001142272	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
78138	chr15	90394821	90395430	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	6883	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
221862	chr8	128312401	128312600	+	0	NA	Intergenic	L2c|LINE|L2	162384	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
74201	chr15	55993001	55994000	+	0	NA	intron (NM_006154, intron 1 of 28)	CpG	112	NM_006154	4734		NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	NEDD4 E3 ubiquitin protein ligase	protein-coding
193252	chr6	29946001	29947000	+	0	NA	TTS (NM_002116)	TTS (NM_002116)	3968	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
215822	chr8	6423901	6424430	+	0	NA	intron (NR_136159, intron 3 of 6)	intron (NR_136159, intron 3 of 6)	17012	NM_001322045	79648		NM_024596	ENSG00000147316	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
53297	chr12	64457021	64458480	+	0	NA	intron (NM_013254, intron 2 of 20)	intron (NM_013254, intron 2 of 20)	5630	NM_013254	29110		NM_013254	ENSG00000183735	TBK1	FTDALS4|IIAE8|NAK|T2K	TANK binding kinase 1	protein-coding
35026	chr11	559021	559700	+	0	NA	promoter-TSS (NR_147608)	promoter-TSS (NR_147608)	98	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
137932	chr2	201112171	201112530	+	0	NA	Intergenic	Intergenic	-3754	NM_001127184	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
194732	chr6	33854421	33855130	+	0	NA	Intergenic	Intergenic	42132	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
81439	chr16	8865551	8866000	+	0	NA	intron (NM_001278260, intron 1 of 4)	MIR|SINE|MIR	1653	NM_001278264	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
85431	chr16	50371121	50371530	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-2337	NM_013263	29117		NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4|SMARCI1	bromodomain containing 7	protein-coding
238515	chrX	153673101	153673900	+	0	NA	promoter-TSS (NM_001135740)	promoter-TSS (NM_001135740)	184	NM_001366978	139728		NM_198452	ENSG00000130822	PNCK	BSTK3|CaMK1b	pregnancy up-regulated nonubiquitous CaM kinase	protein-coding
223315	chr8	143814151	143814450	+	0	NA	intron (NM_182706, intron 1 of 36).2	intron (NM_182706, intron 1 of 36).2	-1258	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
102139	chr17	75087451	75088350	+	0	NA	promoter-TSS (NM_004695)	promoter-TSS (NM_004695)	-54	NM_001369668	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
232137	chr9	134027221	134027630	+	0	NA	3' UTR (NM_001355256, exon 3 of 3)	3' UTR (NM_001355256, exon 3 of 3)	1944	NM_001355256	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
12304	chr1	100921121	100921680	+	0	NA	intron (NM_133496, intron 7 of 10)	intron (NM_133496, intron 7 of 10)	25310	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
186680	chr5	138655471	138656330	+	0	NA	Intergenic	Intergenic	-80499	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
98591	chr17	47738221	47738830	+	0	NA	intron (NM_013351, intron 1 of 5)	L1ME3G|LINE|L1	5289	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
69275	chr14	93065801	93066950	+	0	NA	intron (NM_014216, intron 3 of 10).2	L2a|LINE|L2	-1077	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
222734	chr8	141397821	141398100	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	5939	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
57960	chr12	123905351	123905850	+	0	NA	intron (NM_207437, intron 56 of 77)	L1ME4b|LINE|L1	66459	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
28266	chr10	45734351	45735080	+	0	NA	intron (NM_001367402, intron 4 of 30)	intron (NM_001367402, intron 4 of 30)	7449	NM_001367415	253725		NM_015262	ENSG00000172661	WASHC2C	FAM21A|FAM21C|VPEF	WASH complex subunit 2C	protein-coding
15355	chr1	150011951	150012050	+	0	NA	Intergenic	Intergenic	-1274	NM_020205	56957		NM_020205	ENSG00000264522	OTUD7B	CEZANNE|ZA20D1	OTU deubiquitinase 7B	protein-coding
167637	chr3	129602471	129602850	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	4016	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
83394	chr16	27140301	27140500	+	0	NA	Intergenic	Intergenic	-63126	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
64678	chr14	32183771	32183930	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	-18195	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
42698	chr11	72663271	72663430	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	5714	NM_001146209	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
220864	chr8	103407451	103407550	+	0	NA	intron (NM_030780, intron 2 of 6)	intron (NM_030780, intron 2 of 6)	7607	NM_030780	81034		NM_030780	ENSG00000164933	SLC25A32	GLYB|MFT|MFTC|RREI	solute carrier family 25 member 32	protein-coding
133011	chr2	111666301	111666500	+	0	NA	Intergenic	(GGT)n|Simple_repeat|Simple_repeat	104734	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
169439	chr3	164292051	164292150	+	0	NA	Intergenic	L1HS|LINE|L1	-120544	NR_031665	100302148		NR_031665	ENSG00000221251	MIR1263	MIRN1263|hsa-mir-1263	microRNA 1263	ncRNA
1196	chr1	2245951	2247150	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	18231	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
45756	chr11	119219201	119219600	+	0	NA	intron (NM_005188, intron 1 of 15)	AluSx1|SINE|Alu	13061	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
206071	chr7	27171651	27172300	+	0	NA	TTS (NR_046609)	TTS (NR_046609)	2345	NM_018951	3206		NM_018951	ENSG00000253293	HOXA10	HOX1|HOX1.8|HOX1H|PL	homeobox A10	protein-coding
116570	chr19	18239171	18239930	+	0	NA	intron (NM_000923, intron 1 of 15)	intron (NM_000923, intron 1 of 15)	-5171	NM_001330172	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
118856	chr19	38647071	38648200	+	0	NA	promoter-TSS (NM_001322033)	promoter-TSS (NM_001322033)	-14	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
119773	chr19	41305471	41305630	+	0	NA	intron (NM_144732, intron 13 of 14)	intron (NM_144732, intron 13 of 14)	-4622	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
198065	chr6	90227121	90227380	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	69593	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
101357	chr17	67196821	67197380	+	0	NA	intron (NM_001330447, intron 7 of 32)	THE1B|LTR|ERVL-MaLR	-47676	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
43362	chr11	76803871	76804530	+	0	NA	Intergenic	Intergenic	12448	NM_001318477	25987		NM_015516	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
57995	chr12	124333721	124334100	+	0	NA	intron (NM_001077261, intron 42 of 47)	intron (NM_001077261, intron 42 of 47)	3332	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
231359	chr9	130581051	130581150	+	0	NA	intron (NM_003934, intron 1 of 18)	intron (NM_003934, intron 1 of 18)	1523	NM_003934	8939		NM_003934	ENSG00000107164	FUBP3	FBP3	far upstream element binding protein 3	protein-coding
139721	chr2	227884471	227884700	+	0	NA	intron (NM_001330004, intron 2 of 13)	L1MDb|LINE|L1	12954	NM_178821	164781		NM_178821	ENSG00000123977	DAW1	CILD52|DNAAF18|ODA16|WDR69	dynein assembly factor with WD repeats 1	protein-coding
94045	chr17	27323821	27324280	+	0	NA	Intergenic	(TCAT)n|Simple_repeat|Simple_repeat	29936	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
33737	chr10	122382401	122382800	+	0	NA	intron (NM_001377254, intron 2 of 11)	L1MC4|LINE|L1	-3469	NM_001195608	59338		NM_021622	ENSG00000107679	PLEKHA1	TAPP1	pleckstrin homology domain containing A1	protein-coding
111748	chr19	4365451	4365950	+	0	NA	intron (NM_001199944, intron 3 of 9)	intron (NM_001199944, intron 3 of 9)	22138	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
204930	chr7	6234401	6234700	+	0	NA	intron (NM_004227, intron 1 of 12)	MamGypLTR3a|LTR|Gypsy	38074	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
7766	chr1	36179701	36180050	+	0	NA	exon (NM_018067, exon 16 of 17)	exon (NM_018067, exon 16 of 17)	23715	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
58336	chr12	131495321	131495580	+	0	NA	Intergenic	Intergenic	147980	NR_103736	338797		NM_001025466		LINC02370	-	long intergenic non-protein coding RNA 2370	ncRNA
77089	chr15	78914001	78914750	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	30671	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
134382	chr2	136323801	136324530	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-206016	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
129971	chr2	73986201	73986830	+	0	NA	exon (NM_001287491, exon 2 of 12)	exon (NM_001287491, exon 2 of 12)	1605	NM_001287491	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
222633	chr8	141118551	141118850	+	0	NA	Intergenic	Intergenic	-9889	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
17787	chr1	159780501	159781900	+	0	NA	exon (NM_001319659, exon 2 of 3)	exon (NM_001319659, exon 2 of 3)	238	NM_001319659	54935		NM_017823	ENSG00000158716	DUSP23	DUSP25|LDP-3|LDP3|MOSP|VHZ	dual specificity phosphatase 23	protein-coding
98262	chr17	46185651	46186130	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	6892	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
210655	chr7	100484621	100485480	+	0	NA	intron (NM_173564, intron 1 of 6)	intron (NM_173564, intron 1 of 6)	1123	NM_173564	222950		NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
64367	chr14	24124751	24125200	+	0	NA	non-coding (NR_028100, exon 14 of 14)	non-coding (NR_028100, exon 14 of 14)	-6491	NM_203402	161247		NM_203402	ENSG00000139914	FITM1	FIT1	fat storage inducing transmembrane protein 1	protein-coding
177978	chr4	139087121	139087580	+	0	NA	intron (NM_001371324, intron 5 of 10)	AluJr|SINE|Alu	-2936	NM_001276457	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
50722	chr12	48968701	48969300	+	0	NA	intron (NM_003394, intron 3 of 4)	intron (NM_003394, intron 3 of 4)	2735	NM_003394	7480		NM_003394	ENSG00000169884	WNT10B	SHFM6|STHAG8|WNT-12	Wnt family member 10B	protein-coding
38361	chr11	44602421	44602880	+	0	NA	intron (NM_002231, intron 4 of 9)	intron (NM_002231, intron 4 of 9)	36987	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
82500	chr16	17396471	17397830	+	0	NA	intron (NM_022166, intron 1 of 11)	L2c|LINE|L2	73810	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
172786	chr4	2944121	2944650	+	0	NA	intron (NM_001291978, intron 12 of 17)	intron (NM_001291978, intron 12 of 17)	8839	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
194811	chr6	34244801	34245480	+	0	NA	3' UTR (NM_001319081, exon 5 of 5)	3' UTR (NM_001319081, exon 5 of 5)	3866	NM_001008703	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
873	chr1	1628151	1628250	+	0	NA	intron (NM_080875, intron 14 of 19)	CpG-125	-3973	NM_006983	8510		NM_006983	ENSG00000189409	MMP23B	MIFR|MIFR-1|MMP22|MMP23A	matrix metallopeptidase 23B	protein-coding
76479	chr15	74871021	74871500	+	0	NA	intron (NM_001320778, intron 1 of 9)	AluJr|SINE|Alu	2105	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
188999	chr5	168291521	168292430	+	0	NA	5' UTR (NM_001161662, exon 1 of 23)	5' UTR (NM_001161662, exon 1 of 23)	330	NM_001161661	23286		NM_015238	ENSG00000113645	WWC1	HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168	WW and C2 domain containing 1	protein-coding
166195	chr3	111737721	111738180	+	0	NA	intron (NM_001134437, intron 1 of 17)	AmnSINE1|SINE|5S-Deu-L2	5454	NM_001134437	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
200882	chr6	138970901	138971930	+	0	NA	intron (NM_031922, intron 1 of 19)	intron (NM_031922, intron 1 of 19)	16838	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
146477	chr20	49800721	49801300	+	0	NA	Intergenic	AluJb|SINE|Alu	-11703	NM_001260491	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
119674	chr19	40874971	40876700	+	0	NA	exon (NM_000764, exon 9 of 9)	exon (NM_000764, exon 9 of 9)	6917	NM_000764	1549		NM_000764	ENSG00000198077	CYP2A7	CPA7|CPAD|CYP2A|CYPIIA7|P450-IIA4	cytochrome P450 family 2 subfamily A member 7	protein-coding
194536	chr6	33311071	33311430	+	0	NA	intron (NM_172209, intron 2 of 6).2	AluSq|SINE|Alu	2828	NM_003190	6892		NM_003190	ENSG00000231925	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein	protein-coding
210905	chr7	101185701	101186100	+	0	NA	Intergenic	AluJo|SINE|Alu	-5607	NM_198571	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
97173	chr17	42667121	42667480	+	0	NA	TTS (NR_073574)	TTS (NR_073574)	8016	NM_016437	27175		NM_016437	ENSG00000037042	TUBG2	-	tubulin gamma 2	protein-coding
217862	chr8	37835151	37835450	+	0	NA	exon (NM_032777, exon 12 of 19)	exon (NM_032777, exon 12 of 19)	14561	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
102248	chr17	75263121	75263480	+	0	NA	promoter-TSS (NM_001172704)	promoter-TSS (NM_001172704)	-937	NM_001172704	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
143419	chr20	29742121	29742700	+	0	NA	Intergenic	CpG	-137974	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
29693	chr10	72055651	72055750	+	0	NA	Intergenic	Intergenic	32851	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
113769	chr19	10521871	10522250	+	0	NA	Intergenic	Intergenic	-4095	NM_001166215	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
90945	chr17	2627121	2627380	+	0	NA	intron (NM_000430, intron 1 of 10)	L1PBa|LINE|L1	33596	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
81087	chr16	4348621	4349030	+	0	NA	intron (NM_001201479, intron 27 of 30)	AluSx3|SINE|Alu	2496	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
208257	chr7	65648821	65649080	+	0	NA	non-coding (NR_038378, exon 6 of 8)	non-coding (NR_038378, exon 6 of 8)	1096	NR_027392	644619		NR_027392	ENSG00000273024	INTS4P2	INTS4L2	integrator complex subunit 4 pseudogene 2	pseudo
177034	chr4	107206801	107206950	+	0	NA	Intergenic	L1HS|LINE|L1	-170562	NM_014421	27123		NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
138259	chr2	203325971	203326130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2344	NR_164704	10152		NM_005759	ENSG00000138443	ABI2	ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB	abl interactor 2	protein-coding
122567	chr19	49669421	49669980	+	0	NA	intron (NR_104203, intron 4 of 4)	intron (NR_104203, intron 4 of 4)	3767	NM_138639	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
142993	chr20	20356351	20356650	+	0	NA	intron (NM_015585, intron 26 of 26)	intron (NM_015585, intron 26 of 26)	-11604	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
212659	chr7	129535771	129536830	+	0	NA	Intergenic	Intergenic	33769	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
121494	chr19	47147171	47147530	+	0	NA	intron (NR_027280, intron 2 of 8)	AluJb|SINE|Alu	16515	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
113835	chr19	10623671	10623830	+	0	NA	intron (NM_001145056, intron 1 of 21)	AluSx1|SINE|Alu	-1803	NM_001363611	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
69622	chr14	97641701	97642000	+	0	NA	intron (NR_033943, intron 3 of 3)	intron (NR_033943, intron 3 of 3)	44808	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
129308	chr2	68653401	68654100	+	0	NA	intron (NM_138964, intron 2 of 2)	intron (NM_138964, intron 2 of 2)	10171	NM_138964	10887		NM_138964	ENSG00000169618	PROKR1	GPR73|GPR73a|PK-R1|PKR1|ZAQ	prokineticin receptor 1	protein-coding
160203	chr3	23880871	23881230	+	0	NA	intron (NM_003341, intron 3 of 5)	intron (NM_003341, intron 3 of 5)	-35495	NM_001253379	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
73257	chr15	41824051	41824950	+	0	NA	exon (NM_001128608, exon 31 of 32)	exon (NM_001128608, exon 31 of 32)	-3585	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
63053	chr13	113110321	113111330	+	0	NA	exon (NM_000131, exon 3 of 9)	exon (NM_000131, exon 3 of 9)	5034	NM_019616	2155		NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
177301	chr4	109631621	109632080	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	71595	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
124263	chr19	57738371	57738750	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8255	NR_145328	284309		NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
187058	chr5	140107251	140108810	+	0	NA	promoter-TSS (NR_102739)	promoter-TSS (NR_102739)	-18	NR_102739	100505636		NR_102739		MALINC1	LINC01024|MA-linc1	mitosis associated long intergenic non-coding RNA 1	ncRNA
61509	chr13	52850721	52851350	+	0	NA	Intergenic	CpG	-2395	NM_032949	5100		NM_002590	ENSG00000136099	PCDH8	ARCADLIN|PAPC	protocadherin 8	protein-coding
65501	chr14	51886101	51886650	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	25763	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
86859	chr16	67939551	67940800	+	0	NA	exon (NM_000229, exon 6 of 6)	exon (NM_000229, exon 6 of 6)	-3325	NM_002801	5699		NM_002801	ENSG00000205220	PSMB10	LMP10|MECL1|PRAAS5|beta2i	proteasome 20S subunit beta 10	protein-coding
212909	chr7	130901451	130901850	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	11660	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
226395	chr9	70404271	70404830	+	0	NA	intron (NM_001206, intron 1 of 1)	AluJb|SINE|Alu	10107	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
232028	chr9	133378271	133378830	+	0	NA	promoter-TSS (NM_001280788).2	promoter-TSS (NM_001280788).2	-601	NM_001280788	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
223426	chr8	143950371	143951400	+	0	NA	promoter-TSS (NM_201380)	promoter-TSS (NM_201380)	41	NM_201380	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
10911	chr1	83701401	83702000	+	0	NA	intron (NR_119375, intron 2 of 2)	intron (NR_119375, intron 2 of 2)	158846	NR_119374	101927560		NR_119374	ENSG00000233008	LOC101927560	-	uncharacterized LOC101927560	ncRNA
46340	chr11	125566871	125567430	+	0	NA	Intergenic	LTR28|LTR|ERV1	-2327	NM_004879	9538		NM_004879	ENSG00000149547	EI24	EPG4|PIG8|TP53I8	EI24 autophagy associated transmembrane protein	protein-coding
188124	chr5	150389521	150390200	+	0	NA	intron (NM_001371623, intron 18 of 26)	intron (NM_001371623, intron 18 of 26)	22896	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
234983	chrX	39578371	39578800	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-82631	NR_037501	100500822		NR_037501	ENSG00000263730	MIR3937	-	microRNA 3937	ncRNA
48776	chr12	11647971	11648130	+	0	NA	Intergenic	Intergenic	-1624	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
170352	chr3	184565171	184565330	+	0	NA	intron (NM_004443, intron 1 of 15)	intron (NM_004443, intron 1 of 15)	3465	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
58907	chr13	19664821	19665080	+	0	NA	intron (NM_017520, intron 9 of 13)	intron (NM_017520, intron 9 of 13)	31291	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
122710	chr19	49937471	49938480	+	0	NA	Intergenic	Intergenic	4911	NR_039906	100616483		NR_039906	ENSG00000283842	MIR4751	-	microRNA 4751	ncRNA
234212	chrX	12970071	12971030	+	0	NA	Intergenic	MIR|SINE|MIR	-4560	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
50214	chr12	46216121	46217000	+	0	NA	intron (NM_001278387, intron 6 of 17)	intron (NM_001278387, intron 6 of 17)	49956	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
6322	chr1	27657871	27658300	+	0	NA	Intergenic	AluJr|SINE|Alu	4637	NR_151722	111216282		NR_151722	ENSG00000233975	LINC02574	HEAL	long intergenic non-protein coding RNA 2574	ncRNA
112002	chr19	4972371	4973080	+	0	NA	intron (NM_001370093, intron 1 of 11)	intron (NM_001370093, intron 1 of 11)	3612	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
104914	chr17	81907271	81907430	+	0	NA	intron (NM_001256434, intron 6 of 13)	intron (NM_001256434, intron 6 of 13)	3825	NM_001282204	5833		NM_002861	ENSG00000185813	PCYT2	ET|SPG82	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
228500	chr9	100094471	100095300	+	0	NA	intron (NM_015051, intron 1 of 11)	AluJb|SINE|Alu	4115	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
233300	chr9	137327791	137329100	+	0	NA	intron (NM_017820, intron 17 of 21)	intron (NM_017820, intron 17 of 21)	-26174	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
108054	chr18	59402371	59402730	+	0	NA	Intergenic	Intergenic	-43285	NM_005570	3998		NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
135670	chr2	168493221	168493480	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	37078	NM_001256126	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
15406	chr1	150240051	150240350	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-4088	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
18423	chr1	161455211	161455480	+	0	NA	Intergenic	CpG	-50112	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
235176	chrX	41265601	41266080	+	0	NA	Intergenic	Intergenic	-9899	NR_135616	105373185		NR_135616	ENSG00000223714	LINC02601	-	long intergenic non-protein coding RNA 2601	ncRNA
116327	chr19	17830451	17831600	+	0	NA	intron (NM_000215, intron 21 of 23)	intron (NM_000215, intron 21 of 23)	-9506	NM_001265587	3640		NM_005543	ENSG00000248099	INSL3	RLF|RLNL|ley-I-L	insulin like 3	protein-coding
59041	chr13	20492621	20492930	+	0	NA	intron (NM_015974, intron 2 of 7)	intron (NM_015974, intron 2 of 7)	33082	NM_015974	51084		NM_015974	ENSG00000165475	CRYL1	GDH|HEL30|gul3DH|lambda-CRY	crystallin lambda 1	protein-coding
227086	chr9	85700321	85700780	+	0	NA	intron (NM_001286717, intron 1 of 24)	MLT1I|LTR|ERVL-MaLR	41404	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
231053	chr9	129631001	129631200	+	0	NA	intron (NM_001286799, intron 1 of 3)	intron (NM_001286799, intron 1 of 3)	4656	NM_001286799	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
107128	chr18	35105371	35105950	+	0	NA	intron (NR_046177, intron 4 of 6)	Tigger15a|DNA|TcMar-Tigger	64247	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
18375	chr1	161367621	161368480	+	0	NA	promoter-TSS (NM_001013625)	promoter-TSS (NM_001013625)	-174	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
116243	chr19	17555171	17556480	+	0	NA	exon (NM_024656, exon 1 of 12)	exon (NM_024656, exon 1 of 12)	176	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
14011	chr1	120720971	120721130	+	0	NA	Intergenic	Intergenic	-2889	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
108440	chr18	70072771	70072930	+	0	NA	intron (NM_173630, intron 34 of 48)	intron (NM_173630, intron 34 of 48)	-116051	NM_006566	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
158244	chr22	50299521	50300600	+	0	NA	intron (NM_001376879, intron 1 of 38)	CpG	275	NM_001376883	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
97008	chr17	42294271	42295030	+	0	NA	intron (NM_003152, intron 5 of 19)	L2a|LINE|L2	6594	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
185259	chr5	123545571	123545830	+	0	NA	exon (NM_001364141, exon 3 of 15)	exon (NM_001364141, exon 3 of 15)	283	NM_001044723	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
127510	chr2	42294451	42294750	+	0	NA	intron (NM_019063, intron 11 of 22)	AluSx1|SINE|Alu	65438	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
133884	chr2	130143001	130143430	+	0	NA	intron (NM_207310, intron 2 of 7)	intron (NM_207310, intron 2 of 7)	1897	NM_207310	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
151329	chr21	45606371	45606530	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	12796	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
48256	chr12	8537901	8538330	+	0	NA	intron (NM_014358, intron 3 of 5)	LTR13|LTR|ERVK	2790	NM_014358	26253		NM_014358	ENSG00000166523	CLEC4E	CLECSF9|MINCLE	C-type lectin domain family 4 member E	protein-coding
114157	chr19	11344451	11344880	+	0	NA	intron (NM_001321113, intron 3 of 3)	intron (NM_001321113, intron 3 of 3)	1603	NM_001321114	374882		NM_033408	ENSG00000105518	TMEM205	UNQ501	transmembrane protein 205	protein-coding
191703	chr6	13666001	13666200	+	0	NA	intron (NM_005493, intron 2 of 13)	L1ME2z|LINE|L1	45735	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
50655	chr12	48814151	48816050	+	0	NA	promoter-TSS (NM_001206916)	promoter-TSS (NM_001206916)	-474	NM_001206916	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
54381	chr12	89859121	89859880	+	0	NA	Intergenic	L2c|LINE|L2	-88193	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
36439	chr11	5124071	5124270	+	0	NA	Intergenic	Intergenic	14186	NM_001005160	390054		NM_001005160	ENSG00000171944	OR52A5	OR11-33	olfactory receptor family 52 subfamily A member 5	protein-coding
72792	chr15	40037021	40037280	+	0	NA	intron (NM_003134, intron 3 of 4)	intron (NM_003134, intron 3 of 4)	2031	NM_003134	6727		NM_003134	ENSG00000140319	SRP14	ALURBP	signal recognition particle 14	protein-coding
136873	chr2	188291601	188291800	+	0	NA	promoter-TSS (NM_001375935)	promoter-TSS (NM_001375935)	-174	NM_001375951	51454		NM_016315	ENSG00000144366	GULP1	CED-6|CED6|GULP	GULP PTB domain containing engulfment adaptor 1	protein-coding
124686	chr2	3493821	3494080	+	0	NA	Intergenic	Intergenic	23797	NM_001306077	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
121006	chr19	45779171	45780630	+	0	NA	promoter-TSS (NM_001288765)	promoter-TSS (NM_001288765)	-281	NM_001288765	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
203813	chr7	1359951	1360050	+	0	NA	Intergenic	Intergenic	99470	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
25766	chr10	11113171	11113730	+	0	NA	intron (NM_001326345, intron 1 of 13)	intron (NM_001326345, intron 1 of 13)	-7962	NR_046108	439950		NR_046108	ENSG00000237986	CELF2-AS2	-	CELF2 antisense RNA 2	ncRNA
224180	chr9	5338851	5339780	+	0	NA	intron (NM_006911, intron 1 of 1)	CpG	561	NM_006911	6013		NM_006911	ENSG00000107018	RLN1	H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2	relaxin 1	protein-coding
40613	chr11	64675851	64676150	+	0	NA	intron (NM_001376265, intron 6 of 21)	intron (NM_001376265, intron 6 of 21)	-32455	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
1234	chr1	2281871	2282650	+	0	NA	intron (NM_003036, intron 1 of 6)	CpG	53941	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
135124	chr2	157422021	157422530	+	0	NA	intron (NM_004288, intron 6 of 7)	L1MEi|LINE|L1	21814	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
23352	chr1	228145851	228146500	+	0	NA	intron (NM_001242840, intron 3 of 6)	intron (NM_001242840, intron 3 of 6)	1479	NM_001159391	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
22832	chr1	225423651	225424150	+	0	NA	intron (NM_194442, intron 2 of 13)	intron (NM_194442, intron 2 of 13)	4138	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
213205	chr7	132666221	132666750	+	0	NA	intron (NR_046323, intron 3 of 4)	MIRc|SINE|MIR	17691	NR_046323	286023		NM_173682	ENSG00000183470	FLJ40288	-	Putative uncharacterized protein FLJ40288	ncRNA
116821	chr19	18559921	18560730	+	0	NA	intron (NM_001171949, intron 1 of 4)	intron (NM_001171949, intron 1 of 4)	2455	NM_024069	79036		NM_024069	ENSG00000105700	KXD1	BORCS4|C10orf50|C19orf50|KXDL|MST096|MSTP096	KxDL motif containing 1	protein-coding
195718	chr6	39088371	39088700	+	0	NA	non-coding (NR_136563, exon 14 of 14)	non-coding (NR_136563, exon 14 of 14)	14221	NR_162114	113218508		NR_162114		MIR9983	-	microRNA 9983	ncRNA
47874	chr12	6684621	6685150	+	0	NA	intron (NM_001039920, intron 2 of 8)	intron (NM_001039920, intron 2 of 8)	4490	NM_133476	171017		NM_133476	ENSG00000126746	ZNF384	CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1	zinc finger protein 384	protein-coding
56983	chr12	120554251	120554550	+	0	NA	intron (NM_001330474, intron 3 of 16)	intron (NM_001330474, intron 3 of 16)	20044	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
73777	chr15	45631901	45632100	+	0	NA	5' UTR (NM_001271213, exon 2 of 11)	5' UTR (NM_001271213, exon 2 of 11)	852	NM_001271213	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
191604	chr6	12065371	12066130	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	53438	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
28480	chr10	49593051	49593350	+	0	NA	Intergenic	Intergenic	-15895	NM_020984	1103		NM_020549	ENSG00000070748	CHAT	CHOACTASE|CMS1A|CMS1A2|CMS6	choline O-acetyltransferase	protein-coding
194084	chr6	31892001	31892400	+	0	NA	intron (NM_001318833, intron 7 of 27).6	AluSx1|SINE|Alu	4789	NM_001318833	10919		NM_006709	ENSG00000204371	EHMT2	BAT8|C6orf30|G9A|GAT8|KMT1C|NG36	euchromatic histone lysine methyltransferase 2	protein-coding
126483	chr2	28391501	28394100	+	0	NA	promoter-TSS (NM_005253)	promoter-TSS (NM_005253)	-58	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
192815	chr6	26884621	26885050	+	0	NA	intron (NR_003504, intron 5 of 8)	MER5A|DNA|hAT-Charlie	71719	NR_003504	387036		NM_001033523	ENSG00000290474	GUSBP2	GUSBL1|GUSBP4|SMA3-L|SMAC3L|SMAC3L2|b55C20.1|bA239L20.1|bA239L20.5|bGLU-Lp	GUSB pseudogene 2	pseudo
177807	chr4	123421621	123422500	+	0	NA	Intergenic	Intergenic	22520	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
83024	chr16	22301721	22302250	+	0	NA	intron (NM_001258035, intron 1 of 19).2	intron (NM_001258035, intron 1 of 19).2	4576	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
13079	chr1	111513421	111514030	+	0	NA	intron (NM_001081976, intron 1 of 5)	intron (NM_001081976, intron 1 of 5)	-10092	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
127767	chr2	44120321	44120750	+	0	NA	Intergenic	Intergenic	-48268	NM_177969	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
711	chr1	1427001	1428600	+	0	NA	TTS (NM_001146685)	TTS (NM_001146685)	1672	NM_001146685	643965		NM_001146685	ENSG00000205116	TMEM88B	-	transmembrane protein 88B	protein-coding
53464	chr12	65917221	65917480	+	0	NA	intron (NM_003483, intron 3 of 4)	intron (NM_003483, intron 3 of 4)	-35025	NR_158985	100129940		NR_120478	ENSG00000197301	HMGA2-AS1	-	HMGA2 antisense RNA 1	ncRNA
4500	chr1	21664021	21664280	+	0	NA	intron (NM_002885, intron 1 of 24)	intron (NM_002885, intron 1 of 24)	5207	NM_001350526	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
7991	chr1	37963021	37963480	+	0	NA	intron (NM_006802, intron 15 of 16)	AluJb|SINE|Alu	-16193	NR_158629	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
165672	chr3	101862821	101863350	+	0	NA	Intergenic	L2a|LINE|L2	13571	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
79497	chr16	782671	783280	+	0	NA	Intergenic	CpG	5406	NM_001369658	113000		NM_058192	ENSG00000007376	RPUSD1	C16orf40|RLUCL	RNA pseudouridine synthase domain containing 1	protein-coding
123474	chr19	54166001	54166680	+	0	NA	intron (NM_144686, intron 5 of 14).4	(A)n|Simple_repeat|Simple_repeat	-6619	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
95762	chr17	38662921	38663830	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	11582	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
103585	chr17	78703871	78704230	+	0	NA	intron (NM_017456, intron 3 of 12)	intron (NM_017456, intron 3 of 12)	12982	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
191954	chr6	16134901	16135480	+	0	NA	intron (NM_013262, intron 2 of 6)	L1MC|LINE|L1	6104	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
67584	chr14	71697871	71698240	+	0	NA	intron (NM_001354286, intron 14 of 24)	intron (NM_001354286, intron 14 of 24)	111757	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
72981	chr15	40590771	40591150	+	0	NA	Intergenic	HERV1_LTRa|LTR|ERV1	-3289	NM_144508	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
63786	chr14	21271321	21271780	+	0	NA	Intergenic	AluJb|SINE|Alu	-2071	NM_001077442	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
188670	chr5	157261351	157261650	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-4623	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
14640	chr1	145499971	145500900	+	0	NA	Intergenic	L1PA16|LINE|L1	-94657	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
200750	chr6	137799671	137800630	+	0	NA	Intergenic	Intergenic	-61113	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
93356	chr17	18230471	18231680	+	0	NA	intron (NM_004140, intron 2 of 22)	intron (NM_004140, intron 2 of 22)	5440	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
92836	chr17	16208451	16208780	+	0	NA	intron (NM_006311, intron 1 of 45)	AluJo|SINE|Alu	6919	NM_006311	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
59610	chr13	27792251	27793000	+	0	NA	5' UTR (NM_145657, exon 1 of 2)	5' UTR (NM_145657, exon 1 of 2)	142	NM_145657	219409		NM_145657	ENSG00000169840	GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
210532	chr7	100233051	100233350	+	0	NA	intron (NR_166147, intron 2 of 4)	AluJo|SINE|Alu	13952	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
11526	chr1	90983871	90984550	+	0	NA	intron (NM_032186, intron 1 of 3)	MLT1D|LTR|ERVL-MaLR	37298	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
123102	chr19	51571031	51572150	+	0	NA	intron (NR_136208, intron 1 of 1)	intron (NR_136208, intron 1 of 1)	307	NR_136208	7728		NM_007147	ENSG00000105497	ZNF175	OTK18	zinc finger protein 175	protein-coding
71004	chr14	104731371	104731730	+	0	NA	intron (NM_199165, intron 1 of 12)	intron (NM_199165, intron 1 of 12)	1706	NM_001320424	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
215478	chr7	158336501	158336700	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	196213	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
190819	chr6	1436551	1436930	+	0	NA	Intergenic	Intergenic	-46329	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
12122	chr1	100051051	100051350	+	0	NA	intron (NM_033055, intron 2 of 11)	AluSc|SINE|Alu	13105	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
93891	chr17	21239701	21240230	+	0	NA	3' UTR (NM_152914, exon 3 of 3)	3' UTR (NM_152914, exon 3 of 3)	13445	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
93405	chr17	18364701	18365580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1577	NM_148918	6470		NM_004169	ENSG00000176974	SHMT1	CSHMT|SHMT	serine hydroxymethyltransferase 1	protein-coding
105147	chr17	82248121	82248730	+	0	NA	intron (NM_139062, intron 8 of 9)	intron (NM_139062, intron 8 of 9)	11757	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
235149	chrX	41107971	41109050	+	0	NA	intron (NM_001039590, intron 1 of 44)	L1MB4|LINE|L1	23065	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
156445	chr22	41241801	41242000	+	0	NA	promoter-TSS (NM_138481)	promoter-TSS (NM_138481)	-969	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
174610	chr4	40283151	40284800	+	0	NA	Intergenic	AluSc|SINE|Alu	-23210	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
152058	chr22	19717071	19717230	+	0	NA	promoter-TSS (NR_037611)	promoter-TSS (NR_037611)	-70	NR_037611	100526833		NR_037611	ENSG00000284874	SEPT5-GP1BB	GP1BB|GPIb-beta|GPIbB	SEPT5-GP1BB readthrough	ncRNA
93198	chr17	17815201	17815550	+	0	NA	intron (NM_001321096, intron 12 of 18)	intron (NM_001321096, intron 12 of 18)	-1444	NR_030361	693120		NR_030361	ENSG00000207839	MIR33B	MIRN33B|hsa-mir-33b|mir-33b	microRNA 33b	ncRNA
64169	chr14	22927121	22927930	+	0	NA	intron (NM_006109, intron 4 of 16)	intron (NM_006109, intron 4 of 16)	1851	NM_001282955	10419		NM_006109	ENSG00000100462	PRMT5	HRMT1L5|HSL7|IBP72|JBP1|SKB1|SKB1Hs	protein arginine methyltransferase 5	protein-coding
119120	chr19	39347671	39348030	+	0	NA	intron (NM_001303614, intron 1 of 12)	L2a|LINE|L2	5429	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
163754	chr3	52362321	52362950	+	0	NA	intron (NM_015512, intron 31 of 77)	intron (NM_015512, intron 31 of 77)	46316	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
219626	chr8	80137201	80137480	+	0	NA	intron (NR_105035, intron 1 of 6)	L1MB7|LINE|L1	33781	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
32494	chr10	102710401	102710950	+	0	NA	intron (NM_004311, intron 1 of 5)	intron (NM_004311, intron 1 of 5)	3722	NM_004311	403		NM_004311	ENSG00000138175	ARL3	ARFL3|JBTS35|RP83	ADP ribosylation factor like GTPase 3	protein-coding
194317	chr6	32834471	32834730	+	0	NA	intron (NM_000544, intron 5 of 11)	L1MB3|LINE|L1	4139	NM_001290043	6891		NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
132936	chr2	111444571	111444930	+	0	NA	intron (NR_024373, intron 1 of 1)	L2b|LINE|L2	50411	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
39580	chr11	61163301	61163650	+	0	NA	Intergenic	Intergenic	-2049	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
235092	chrX	40280251	40280350	+	0	NA	intron (NR_110386, intron 1 of 2)	L2c|LINE|L2	17383	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
178000	chr4	139298421	139299180	+	0	NA	intron (NM_001184989, intron 1 of 5)	AluJr|SINE|Alu	2410	NM_001184991	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
101965	chr17	74730351	74731350	+	0	NA	intron (NM_175738, intron 2 of 8)	intron (NM_175738, intron 2 of 8)	-5710	NM_001330471	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
164234	chr3	56988801	56989430	+	0	NA	intron (NM_001377411, intron 1 of 11)	intron (NM_001377411, intron 1 of 11)	49075	NR_046572	100874200		NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
60710	chr13	44112771	44113530	+	0	NA	intron (NR_104065, intron 1 of 4)	intron (NR_104065, intron 1 of 4)	2601	NR_104065	101929212		NR_104064	ENSG00000227258	SMIM2-AS1	C13orf44-AS1|C3orf81-AS1	SMIM2 antisense RNA 1	ncRNA
177586	chr4	120068821	120069080	+	0	NA	Intergenic	L2c|LINE|L2	-2102	NM_002358	4085		NM_002358	ENSG00000164109	MAD2L1	HSMAD2|MAD2	mitotic arrest deficient 2 like 1	protein-coding
172264	chr4	1407071	1407630	+	0	NA	promoter-TSS (NM_001290079)	promoter-TSS (NM_001290079)	-908	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
186987	chr5	139707001	139707980	+	0	NA	Intergenic	Intergenic	32047	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
51152	chr12	50135071	50135450	+	0	NA	intron (NM_147190, intron 8 of 9)	GA-rich|Low_complexity|Low_complexity	23024	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
171211	chr3	195747521	195749030	+	0	NA	intron (NM_018406, intron 24 of 24)	MIRb|SINE|MIR	27297	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
5690	chr1	26362501	26363050	+	0	NA	intron (NM_001307925, intron 5 of 6)	intron (NM_001307925, intron 5 of 6)	-8645	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
99385	chr17	49972771	49972930	+	0	NA	promoter-TSS (NM_001934)	promoter-TSS (NM_001934)	84	NM_001934	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
52556	chr12	56148121	56149150	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3952	NM_001199629	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
151023	chr21	44503621	44504280	+	0	NA	intron (NM_144991, intron 11 of 11)	intron (NM_144991, intron 11 of 11)	-2094	NR_103707	54082		NR_103707	ENSG00000235890	TSPEAR-AS1	C21orf31	TSPEAR antisense RNA 1	ncRNA
65429	chr14	51093371	51094330	+	0	NA	intron (NM_015163, intron 1 of 9)	CpG	1854	NM_052978	114088		NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
61421	chr13	51816701	51817100	+	0	NA	exon (NM_001351005, exon 4 of 4)	exon (NM_001351005, exon 4 of 4)	-12737	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
45083	chr11	117076851	117077600	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	21203	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
69755	chr14	99047621	99048300	+	0	NA	Intergenic	Intergenic	224237	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
163903	chr3	52528271	52529700	+	0	NA	intron (NM_022908, intron 2 of 13)	intron (NM_022908, intron 2 of 13)	4872	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
227534	chr9	91695401	91695650	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-59180	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
196208	chr6	42770701	42772750	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	-11771	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
62932	chr13	111188251	111188350	+	0	NA	intron (NM_001113513, intron 1 of 19)	MLT1F1|LTR|ERVL-MaLR	1506	NM_001113513	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
101851	chr17	74199501	74200250	+	0	NA	Intergenic	Intergenic	-3803	NM_000999	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
16812	chr1	155568851	155569150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6197	NM_001366177	55870		NM_018489	ENSG00000116539	ASH1L	ASH1|ASH1L1|KMT2H|MRD52	ASH1 like histone lysine methyltransferase	protein-coding
135999	chr2	172315671	172315830	+	0	NA	Intergenic	L1HS|LINE|L1	-111586	NM_001316306	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
31696	chr10	97633001	97634250	+	0	NA	promoter-TSS (NM_178832)	promoter-TSS (NM_178832)	-125	NM_178832	118812		NM_178832	ENSG00000171160	MORN4	C10orf83|UTA|bA548K23.4|rtp	MORN repeat containing 4	protein-coding
205997	chr7	26196401	26196750	+	0	NA	exon (NM_031243, exon 6 of 12)	exon (NM_031243, exon 6 of 12)	4171	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
76600	chr15	75360851	75361150	+	0	NA	intron (NM_001256494, intron 12 of 25)	intron (NM_001256494, intron 12 of 25)	-7315	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
178281	chr4	144646801	144647250	+	0	NA	intron (NM_022475, intron 1 of 12)	intron (NM_022475, intron 1 of 12)	869	NM_022475	64399		NM_022475	ENSG00000164161	HHIP	HIP	hedgehog interacting protein	protein-coding
89332	chr16	88745451	88746850	+	0	NA	TTS (NR_120387)	TTS (NR_120387)	3383	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
164380	chr3	58252421	58252680	+	0	NA	intron (NM_001320126, intron 2 of 9)	intron (NM_001320126, intron 2 of 9)	14758	NM_001320126	57406		NM_020676	ENSG00000163686	ABHD6	-	abhydrolase domain containing 6, acylglycerol lipase	protein-coding
189262	chr5	172049651	172049950	+	0	NA	intron (NM_005990, intron 18 of 18)	AluSx|SINE|Alu	-43162	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
163653	chr3	52194651	52194950	+	0	NA	Intergenic	Intergenic	-3283	NM_199166	211		NM_000688	ENSG00000023330	ALAS1	ALAS|ALAS-H|ALAS3|ALASH|MIG4	5'-aminolevulinate synthase 1	protein-coding
159032	chr3	11096621	11096900	+	0	NA	Intergenic	Intergenic	-40478	NM_001098213	3269		NM_000861	ENSG00000196639	HRH1	H1-R|H1R|HH1R|hisH1	histamine receptor H1	protein-coding
44249	chr11	100687051	100687680	+	0	NA	promoter-TSS (NM_001367945)	promoter-TSS (NM_001367945)	77	NM_152432	143872		NM_032021	ENSG00000165895	ARHGAP42	AD031|GRAF3|TMEM133	Rho GTPase activating protein 42	protein-coding
45276	chr11	118014051	118014350	+	0	NA	intron (NM_001354434, intron 5 of 5)	L2c|LINE|L2	27806	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
189258	chr5	172047271	172047630	+	0	NA	intron (NM_005990, intron 18 of 18)	intron (NM_005990, intron 18 of 18)	-40812	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
98244	chr17	46168371	46168530	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSp|SINE|Alu	24332	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
89170	chr16	88543101	88543600	+	0	NA	Intergenic	L1MEd|LINE|L1	-12297	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
169610	chr3	171251021	171252080	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-144791	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
155277	chr22	38082351	38082900	+	0	NA	intron (NM_013356, intron 3 of 5)	CpG-19044	1559	NM_013356	23539		NM_013356	ENSG00000100156	SLC16A8	MCT3|REMP	solute carrier family 16 member 8	protein-coding
141751	chr2	241898571	241898930	+	0	NA	intron (NM_001382369, intron 1 of 2)	intron (NM_001382369, intron 1 of 2)	390	NM_001382370	285095		NM_001382368	ENSG00000216921	FAM240C	-	family with sequence similarity 240 member C	protein-coding
183509	chr5	79517751	79517850	+	0	NA	Intergenic	Intergenic	-3666	NM_004272	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
33326	chr10	116147501	116147900	+	0	NA	intron (NM_001382556, intron 5 of 10)	intron (NM_001382556, intron 5 of 10)	47089	NR_145811	109623470		NR_145811		SNORD158	-	small nucleolar RNA, C/D box 158	snoRNA
178924	chr4	158817901	158818300	+	0	NA	intron (NM_001366843, intron 1 of 17)	intron (NM_001366843, intron 1 of 17)	12261	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
193029	chr6	28442951	28443850	+	0	NA	promoter-TSS (NM_001012455)	promoter-TSS (NM_001012455)	91	NM_001012455	222696		NM_001012455	ENSG00000187987	ZSCAN23	ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1	zinc finger and SCAN domain containing 23	protein-coding
2550	chr1	9733271	9733430	+	0	NA	intron (NM_014944, intron 15 of 17)	intron (NM_014944, intron 15 of 17)	41883	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
139966	chr2	230875301	230875500	+	0	NA	intron (NM_001287240, intron 2 of 5)	intron (NM_001287240, intron 2 of 5)	10450	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
151750	chr22	17829871	17830950	+	0	NA	intron (NM_015241, intron 21 of 31)	intron (NM_015241, intron 21 of 31)	53120	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
61653	chr13	73932121	73932530	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	201604	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
215555	chr7	158803301	158805030	+	0	NA	intron (NM_020728, intron 1 of 21)	CpG	25344	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
179234	chr4	174212471	174212830	+	0	NA	intron (NR_125896, intron 1 of 4)	intron (NR_125896, intron 1 of 4)	7748	NR_125896	101928509		NR_125896	ENSG00000248174	LINC02268	-	long intergenic non-protein coding RNA 2268	ncRNA
83687	chr16	28419251	28419350	+	0	NA	intron (NM_001199142, intron 1 of 21)	AluY|SINE|Alu	7154	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
228797	chr9	111891971	111892550	+	0	NA	Intergenic	Intergenic	-4554	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
199719	chr6	125389401	125389600	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-87533	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
172890	chr4	3446251	3446550	+	0	NA	intron (NM_001528, intron 10 of 13)	intron (NM_001528, intron 10 of 13)	4432	NM_001297439	3083		NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
130243	chr2	84841001	84841200	+	0	NA	intron (NM_001080824, intron 2 of 5)	intron (NM_001080824, intron 2 of 5)	39984	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
165361	chr3	90182571	90182730	+	0	NA	Intergenic	Intergenic	1075029	NM_005233	2042		NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
229286	chr9	120743001	120743250	+	0	NA	Intergenic	Intergenic	-28655	NM_001080497	1955		NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
206151	chr7	27890271	27890730	+	0	NA	intron (NM_175061, intron 3 of 4)	intron (NM_175061, intron 3 of 4)	150405	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
199687	chr6	122789251	122790100	+	0	NA	intron (NM_001286138, intron 1 of 6)	CpG	417	NM_006714	10924		NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	sphingomyelin phosphodiesterase acid like 3A	protein-coding
15869	chr1	151457151	151457250	+	0	NA	intron (NM_015100, intron 1 of 18)	intron (NM_015100, intron 1 of 18)	2294	NM_001194937	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
11861	chr1	93029251	93030150	+	0	NA	Intergenic	Intergenic	-49535	NM_001164393	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
166514	chr3	114332371	114333500	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-16366	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
170431	chr3	185896621	185897030	+	0	NA	Intergenic	L1MEc|LINE|L1	41189	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
143630	chr20	31803821	31804130	+	0	NA	Intergenic	Intergenic	-15381	NM_033118	85366		NM_033118	ENSG00000101306	MYLK2	KMLC|MLCK|MLCK2|skMLCK	myosin light chain kinase 2	protein-coding
130327	chr2	84981251	84981350	+	0	NA	intron (NM_020122, intron 1 of 6)	AluY|SINE|Alu	10139	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
82648	chr16	19167751	19168380	+	0	NA	promoter-TSS (NM_016524)	promoter-TSS (NM_016524)	-175	NM_016524	51760		NM_016524	ENSG00000103528	SYT17	Syt-17|sytXVII	synaptotagmin 17	protein-coding
5740	chr1	26435571	26435730	+	0	NA	intron (NM_205861, intron 2 of 8)	AluSg|SINE|Alu	3329	NM_205861	79947		NM_024887	ENSG00000117682	DHDDS	CIT|CPT|DEDSM|DS|HDS|RP59|hCIT	dehydrodolichyl diphosphate synthase subunit	protein-coding
207741	chr7	48093451	48094300	+	0	NA	intron (NM_001287426, intron 3 of 9)	intron (NM_001287426, intron 3 of 9)	4610	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
200329	chr6	133895771	133896130	+	0	NA	TTS (NM_198392)	TTS (NM_198392)	6837	NM_198392	6943		NM_003206	ENSG00000118526	TCF21	POD1|bHLHa23	transcription factor 21	protein-coding
17545	chr1	156796571	156796730	+	0	NA	intron (NM_005973, intron 5 of 6)	intron (NM_005973, intron 5 of 6)	-19100	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
23221	chr1	227731651	227732050	+	0	NA	3' UTR (NM_001161465, exon 6 of 6)	3' UTR (NM_001161465, exon 6 of 6)	-3146	NM_001323935	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
122401	chr19	49435171	49435650	+	0	NA	intron (NM_020309, intron 2 of 11)	intron (NM_020309, intron 2 of 11)	6117	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
108402	chr18	69897471	69898180	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	50048	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
11168	chr1	87065351	87065450	+	0	NA	intron (NM_001134492, intron 1 of 4)	MamRep605|LTR?|LTR?	-64365	NR_026988	339524		NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
112454	chr19	6379521	6379850	+	0	NA	3' UTR (NM_002096, exon 13 of 13)	3' UTR (NM_002096, exon 13 of 13)	-3769	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
134829	chr2	148568551	148569050	+	0	NA	Intergenic	Intergenic	-75951	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
204827	chr7	5696571	5696730	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	15260	NR_106934	102466203		NR_106934	ENSG00000283419	MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
182232	chr5	56909001	56910750	+	0	NA	promoter-TSS (NM_001323020)	promoter-TSS (NM_001323020)	-182	NM_001323020	133383		NM_153706	ENSG00000155542	SETD9	C5orf35	SET domain containing 9	protein-coding
43344	chr11	76642371	76642530	+	0	NA	Intergenic	Intergenic	27488	NM_001370189	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
58727	chr12	132588501	132588700	+	0	NA	Intergenic	Intergenic	6603	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
221699	chr8	127163801	127164350	+	0	NA	Intergenic	Intergenic	33552	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
153631	chr22	28748951	28749680	+	0	NA	intron (NM_172002, intron 4 of 5)	L2b|LINE|L2	6634	NM_001318316	150274		NM_172002	ENSG00000100209	HSCB	DNAJC20|HSC20|JAC1|SIDBA5	HscB mitochondrial iron-sulfur cluster cochaperone	protein-coding
152062	chr22	19719901	19720430	+	0	NA	exon (NM_002688, exon 5 of 12)	exon (NM_002688, exon 5 of 12)	1696	NR_037612	100526833		NR_037611	ENSG00000284874	SEPT5-GP1BB	GP1BB|GPIb-beta|GPIbB	SEPT5-GP1BB readthrough	ncRNA
179380	chr4	183552501	183552700	+	0	NA	Intergenic	Intergenic	46518	NM_001291959	3622		NM_001564	ENSG00000168556	ING2	ING1L|p33ING2	inhibitor of growth family member 2	protein-coding
40731	chr11	64814701	64814900	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-3506	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
11400	chr1	89693451	89693800	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	60505	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
90267	chr17	979301	980200	+	0	NA	promoter-TSS (NM_022463)	promoter-TSS (NM_022463)	26	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
45973	chr11	121460871	121461330	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	8786	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
118725	chr19	38257821	38258230	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1651	NM_033256	94274		NM_033256	ENSG00000167641	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1 regulatory inhibitor subunit 14A	protein-coding
197489	chr6	75607171	75607600	+	0	NA	intron (NM_015571, intron 1 of 23)	intron (NM_015571, intron 1 of 23)	5505	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
48953	chr12	12802801	12803700	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-10096	NM_016355	51202		NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD-box helicase 47	protein-coding
108174	chr18	62953771	62953930	+	0	NA	intron (NM_194449, intron 12 of 16)	intron (NM_194449, intron 12 of 16)	238309	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
219479	chr8	73745801	73747600	+	0	NA	intron (NM_001164380, intron 1 of 14)	CpG	140	NM_001164380	27067		NM_014393	ENSG00000040341	STAU2	39K2|39K3	staufen double-stranded RNA binding protein 2	protein-coding
37939	chr11	34313121	34313430	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	44735	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
200023	chr6	129655251	129655550	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	54777	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
235056	chrX	40127021	40127350	+	0	NA	intron (NM_001123384, intron 1 of 13)	MLT1H|LTR|ERVL-MaLR	-29227	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
231173	chr9	129897071	129897300	+	0	NA	intron (NM_001363755, intron 15 of 15)	intron (NM_001363755, intron 15 of 15)	27580	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
24439	chr1	243708271	243708430	+	0	NA	intron (NM_005465, intron 2 of 13)	intron (NM_005465, intron 2 of 13)	134932	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
211121	chr7	102525621	102525880	+	0	NA	Intergenic	Intergenic	-7973	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
223990	chr9	2072821	2073080	+	0	NA	intron (NM_003070, intron 10 of 33)	MLT1N2|LTR|ERVL-MaLR	51005	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
194695	chr6	33690801	33691830	+	0	NA	intron (NM_002224, intron 52 of 57)	intron (NM_002224, intron 52 of 57)	-6813	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
239148	chrY	11327501	11327780	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1093950	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
97511	chr17	43929571	43929930	+	0	NA	Intergenic	LTR46-int|LTR|ERV1	-8511	NR_136406	107546764		NR_136406	ENSG00000261514	LINC01976	-	long intergenic non-protein coding RNA 1976	ncRNA
202325	chr6	157323151	157324480	+	0	NA	promoter-TSS (NM_018452)	promoter-TSS (NM_018452)	-296	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
61334	chr13	50593771	50593930	+	0	NA	Intergenic	Intergenic	-66401	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
130570	chr2	85755421	85755980	+	0	NA	intron (NM_032827, intron 1 of 2)	intron (NM_032827, intron 1 of 2)	1709	NM_032827	84913		NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
225161	chr9	33816321	33817600	+	0	NA	promoter-TSS (NM_017811)	promoter-TSS (NM_017811)	-200	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
25583	chr10	8037901	8038550	+	0	NA	Intergenic	Intergenic	14266	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
141939	chr20	1266071	1267330	+	0	NA	5' UTR (NM_001318234, exon 2 of 7)	5' UTR (NM_001318234, exon 2 of 7)	406	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
204545	chr7	4972571	4972730	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1335	NR_015449	441191		NR_015449	ENSG00000196204	RNF216P1	RNF216L|hCG2040556	ring finger protein 216 pseudogene 1	pseudo
37288	chr11	14716001	14716400	+	0	NA	intron (NM_001363569, intron 1 of 15)	L1PA2|LINE|L1	72396	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
41750	chr11	66683001	66683400	+	0	NA	3' UTR (NM_006946, exon 38 of 38)	3' UTR (NM_006946, exon 38 of 38)	-5313	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
58915	chr13	19735501	19736100	+	0	NA	intron (NM_001354909, intron 5 of 8)	intron (NM_001354909, intron 5 of 8)	47145	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
54002	chr12	75456121	75456380	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-24505	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
217677	chr8	30107651	30107750	+	0	NA	3' UTR (NM_015344, exon 4 of 4)	3' UTR (NM_015344, exon 4 of 4)	12292	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
149344	chr21	29073051	29074280	+	0	NA	promoter-TSS (NM_006585)	promoter-TSS (NM_006585)	-17	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
13238	chr1	112686951	112687130	+	0	NA	5' UTR (NM_001286072, exon 3 of 22)	5' UTR (NM_001286072, exon 3 of 22)	12302	NM_001369507	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
236905	chrX	86015051	86015150	+	0	NA	intron (NM_001320959, intron 2 of 14)	intron (NM_001320959, intron 2 of 14)	32206	NM_001362518	1121		NM_000390	ENSG00000188419	CHM	DXS540|GGTA|HSD-32|REP-1|TCD	CHM Rab escort protein	protein-coding
234844	chrX	24493701	24494100	+	0	NA	intron (NM_001142386, intron 1 of 11)	intron (NM_001142386, intron 1 of 11)	28614	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
86390	chr16	66608071	66609480	+	0	NA	intron (NM_144601, intron 3 of 5)	intron (NM_144601, intron 3 of 5)	4044	NR_037619	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
187178	chr5	140644101	140644600	+	0	NA	TTS (NM_002488)	TTS (NM_002488)	3280	NM_002488	4695		NM_002488	ENSG00000131495	NDUFA2	B8|CD14|CIB8|MC1DN13	NADH:ubiquinone oxidoreductase subunit A2	protein-coding
181550	chr5	43120731	43122480	+	0	NA	promoter-TSS (NM_001330716)	promoter-TSS (NM_001330716)	40	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
96719	chr17	41648601	41649580	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8891	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
114226	chr19	11477921	11478480	+	0	NA	intron (NM_001420, intron 1 of 6)	intron (NM_001420, intron 1 of 6)	2846	NM_032281	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
56286	chr12	112170301	112170580	+	0	NA	exon (NM_001109662, exon 69 of 76)	exon (NM_001109662, exon 69 of 76)	-7119	NR_106921	102465519		NR_106921	ENSG00000283793	MIR6861	hsa-mir-6861	microRNA 6861	ncRNA
209850	chr7	90244851	90246330	+	0	NA	intron (NM_001160138, intron 1 of 22)	intron (NM_001160138, intron 1 of 22)	416	NM_001363438	79846		NM_024788	ENSG00000105792	CFAP69	C7orf63|FAP69|SPGF24	cilia and flagella associated protein 69	protein-coding
213463	chr7	138903401	138904300	+	0	NA	intron (NM_001164665, intron 7 of 19)	(GT)n|Simple_repeat|Simple_repeat	77539	NM_001164665	57670		NM_020910	ENSG00000122778	KIAA1549	RP86	KIAA1549	protein-coding
1081	chr1	1927051	1927500	+	0	NA	intron (NM_001304360, intron 28 of 38)	intron (NM_001304360, intron 28 of 38)	-7996	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
72071	chr15	28892221	28892480	+	0	NA	intron (NM_001353788, intron 1 of 14).2	AluY|SINE|Alu	6376	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
178042	chr4	139606701	139607130	+	0	NA	Intergenic	Intergenic	-50146	NM_001306199	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
129316	chr2	68718271	68718830	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-16261	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
57483	chr12	122080521	122080880	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	1944	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
85102	chr16	33837321	33837580	+	0	NA	Intergenic	L1P4|LINE|L1	68073	NR_130772	104644205		NR_130771		ENPP7P13	DUNQU1	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13	pseudo
31875	chr10	100185121	100187600	+	0	NA	promoter-TSS (NR_144760)	promoter-TSS (NR_144760)	-331	NM_001347857	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
236655	chrX	76007271	76007430	+	0	NA	Intergenic	L1PA2|LINE|L1	-165579	NM_001300888	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
63563	chr14	20411001	20411650	+	0	NA	intron (NM_007110, intron 1 of 54)	L2c|LINE|L2	2176	NM_007110	7011		NM_007110	ENSG00000129566	TEP1	TLP1|TP1|TROVE1|VAULT2|p240	telomerase associated protein 1	protein-coding
123140	chr19	52094551	52094650	+	0	NA	promoter-TSS (NM_001352299)	promoter-TSS (NM_001352299)	-329	NM_001352299	284371		NM_001136499	ENSG00000197608	ZNF841	-	zinc finger protein 841	protein-coding
193247	chr6	29940071	29940680	+	0	NA	Intergenic	AluY|SINE|Alu	-2095	NM_001242758	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
86365	chr16	66549121	66550400	+	0	NA	non-coding (NR_073520, exon 1 of 9)	non-coding (NR_073520, exon 1 of 9)	362	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
50371	chr12	47217501	47217880	+	0	NA	intron (NM_138371, intron 3 of 3)	AluSx|SINE|Alu	-1247	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
13989	chr1	120618701	120619300	+	0	NA	intron (NR_144516, intron 5 of 43)	intron (NR_144516, intron 5 of 43)	46436	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
223646	chr8	144352521	144352780	+	0	NA	TTS (NM_001252404)	TTS (NM_001252404)	2281	NM_001252404	340393		NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
139998	chr2	230947821	230948250	+	0	NA	Intergenic	Intergenic	-22793	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
74154	chr15	55273101	55273750	+	0	NA	intron (NM_183235, intron 1 of 6)	AluSx1|SINE|Alu	-2503	NM_183236	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
178199	chr4	142416221	142417530	+	0	NA	intron (NM_001385334, intron 4 of 24)	intron (NM_001385334, intron 4 of 24)	-11016	NR_169599	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
50902	chr12	49285971	49286130	+	0	NA	Intergenic	Intergenic	-9097	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
153709	chr22	29280571	29281080	+	0	NA	intron (NM_001163286, intron 5 of 15)	AluSq2|SINE|Alu	12557	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
56073	chr12	110600071	110600500	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-13844	NM_001319681	79600		NM_024549	ENSG00000204852	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
193323	chr6	30163121	30163750	+	0	NA	promoter-TSS (NM_033229).6	promoter-TSS (NM_033229).6	-111	NM_033229	89870		NM_033229	ENSG00000204610	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
100344	chr17	59900021	59900680	+	0	NA	intron (NM_001272044, intron 2 of 15)	intron (NM_001272044, intron 2 of 15)	7229	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
7288	chr1	32390921	32391180	+	0	NA	intron (NM_018045, intron 2 of 10)	L2c|LINE|L2	3391	NM_018045	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
53442	chr12	65176801	65177000	+	0	NA	intron (NM_001167614, intron 1 of 12)	L2c|LINE|L2	7317	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
231720	chr9	131754301	131754500	+	0	NA	Intergenic	L1M3|LINE|L1	-14324	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
15520	chr1	150509021	150509680	+	0	NA	intron (NM_022664, intron 1 of 8)	intron (NM_022664, intron 1 of 8)	1241	NM_004425	1893		NM_004425	ENSG00000143369	ECM1	URBWD	extracellular matrix protein 1	protein-coding
133943	chr2	130557071	130557600	+	0	NA	Intergenic	Intergenic	-7420	NR_033930	646743		NR_033930	ENSG00000290610	PRSS40B	-	serine protease 40B (pseudogene)	pseudo
18651	chr1	166973271	166973700	+	0	NA	intron (NM_199351, intron 1 of 9)	intron (NM_199351, intron 1 of 9)	2055	NM_199351	387597		NM_199351	ENSG00000143195	ILDR2	C1orf32|dJ782G3.1	immunoglobulin like domain containing receptor 2	protein-coding
214274	chr7	148990751	148991050	+	0	NA	Intergenic	AluSx|SINE|Alu	3373	NR_130107	102723099		NR_130107	ENSG00000281189	GHET1	lncRNA-GHET1	gastric carcinoma proliferation enhancing transcript 1	ncRNA
79118	chr16	211821	212480	+	0	NA	intron (NM_018032, intron 3 of 8)	AluSp|SINE|Alu	17299	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
59788	chr13	30304471	30304630	+	0	NA	intron (NM_032116, intron 1 of 10)	AluSc|SINE|Alu	2461	NM_001014380	84056		NM_032116	ENSG00000102781	KATNAL1	-	katanin catalytic subunit A1 like 1	protein-coding
158812	chr3	9729401	9729950	+	0	NA	exon (NM_153635, exon 20 of 20)	exon (NM_153635, exon 20 of 20)	-2054	NM_001319049	7862		NM_004634	ENSG00000156983	BRPF1	BR140|IDDDFP	bromodomain and PHD finger containing 1	protein-coding
118892	chr19	38690801	38691780	+	0	NA	intron (NM_004924, intron 1 of 20)	AluSp|SINE|Alu	43641	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
129537	chr2	69744801	69745200	+	0	NA	intron (NM_001320702, intron 1 of 12)	AluJo|SINE|Alu	2866	NM_001320700	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
176187	chr4	83452851	83453150	+	0	NA	non-coding (NR_123737, exon 2 of 2)	non-coding (NR_123737, exon 2 of 2)	2823	NM_001297759	113510		NM_133636	ENSG00000163312	HELQ	HEL308	helicase, POLQ like	protein-coding
160572	chr3	30697871	30698030	+	0	NA	Intergenic	Intergenic	91349	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
7459	chr1	33084821	33085080	+	0	NA	intron (NM_001376724, intron 3 of 9)	L2a|LINE|L2	2772	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
165438	chr3	98538351	98539200	+	0	NA	Intergenic	Tigger12|DNA|TcMar-Tigger	6797	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
73604	chr15	44554071	44554250	+	0	NA	intron (NM_001284335, intron 4 of 6)	AluSz6|SINE|Alu	17013	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
95744	chr17	38594601	38595300	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	11002	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
236532	chrX	72121151	72122250	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	10215	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
40120	chr11	62823371	62823530	+	0	NA	intron (NM_001244666, intron 10 of 10)	AluJb|SINE|Alu	8601	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
65018	chr14	39097901	39098480	+	0	NA	intron (NM_006364, intron 1 of 19)	intron (NM_006364, intron 1 of 19)	-4950	NR_146545	105370458		NR_146545	ENSG00000258651	SEC23A-AS1	-	SEC23A antisense RNA 1	ncRNA
151882	chr22	18833401	18833650	+	0	NA	Intergenic	CpG	-16593	NR_135922	102725072		NR_135922	ENSG00000293159	POM121L15P	-	POM121 transmembrane nucleoporin like 15, pseudogene	pseudo
170368	chr3	184610071	184610430	+	0	NA	Intergenic	Intergenic	48465	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
81977	chr16	11880151	11881130	+	0	NA	intron (NM_001130007, intron 11 of 14)	L1MB2|LINE|L1	-29098	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
79811	chr16	1411121	1411580	+	0	NA	intron (NM_001372107, intron 2 of 14)	AluJo|SINE|Alu	3354	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
128088	chr2	47897301	47897850	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluSz|SINE|Alu	7763	NM_001374325	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
2142	chr1	8374421	8374930	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	49157	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
124405	chr19	58411021	58411630	+	0	NA	intron (NM_173548, intron 2 of 3)	AluSq2|SINE|Alu	2651	NR_134461	201514		NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
35665	chr11	1868621	1868980	+	0	NA	promoter-TSS (NM_001013253)	promoter-TSS (NM_001013253)	94	NM_001013253	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
125003	chr2	9488301	9488500	+	0	NA	TTS (NM_003183)	TTS (NM_003183)	13345	NM_001320858	285148		NM_001039613	ENSG00000134330	IAH1	-	isoamyl acetate hydrolyzing esterase 1 (putative)	protein-coding
55227	chr12	101825151	101825680	+	0	NA	intron (NM_024312, intron 1 of 20)	intron (NM_024312, intron 1 of 20)	5544	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
157232	chr22	43273901	43274330	+	0	NA	intron (NM_173050, intron 4 of 21)	intron (NM_173050, intron 4 of 21)	-1827	NR_134582	101927447		NR_134582	ENSG00000203527	SCUBE1-AS1	-	SCUBE1 antisense RNA 1	ncRNA
33096	chr10	110915571	110915930	+	0	NA	intron (NM_001195304, intron 2 of 4)	AluSz6|SINE|Alu	3186	NM_001195306	92482		NM_001195304	ENSG00000214413	BBIP1	BBIP10|BBS18|NCRNA00081|bA348N5.3	BBSome interacting protein 1	protein-coding
108620	chr18	76374171	76374530	+	0	NA	intron (NM_014643, intron 4 of 6)	intron (NM_014643, intron 4 of 6)	-117302	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
208126	chr7	59811651	59811750	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2361523	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
187062	chr5	140116201	140116400	+	0	NA	3' UTR (NM_005859, exon 1 of 1)	3' UTR (NM_005859, exon 1 of 1)	2191	NM_005859	5813		NM_005859	ENSG00000185129	PURA	MRD31|NEDRIHF|PUR-ALPHA|PUR1|PURALPHA	purine rich element binding protein A	protein-coding
175335	chr4	68359001	68359780	+	0	NA	Intergenic	LTR33|LTR|ERVL	-9300	NM_001031732	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
221970	chr8	129983371	129983730	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	24903	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
121018	chr19	45794271	45794430	+	0	NA	Intergenic	AluSx|SINE|Alu	-1505	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
14508	chr1	144570921	144571430	+	0	NA	Intergenic	Intergenic	-19232	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
68863	chr14	91307601	91308000	+	0	NA	intron (NM_001080414, intron 17 of 29)	intron (NM_001080414, intron 17 of 29)	-53920	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
35690	chr11	1914851	1915850	+	0	NA	Intergenic	Intergenic	-4353	NM_001042781	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
5672	chr1	26335301	26335500	+	0	NA	intron (NM_001039775, intron 14 of 19)	AluSp|SINE|Alu	-17135	NM_145345	91544		NM_145345	ENSG00000158062	UBXN11	COA-1|PP2243|SOC|SOCI|UBXD5	UBX domain protein 11	protein-coding
160465	chr3	30434021	30434280	+	0	NA	Intergenic	MLT1H2-int|LTR|ERVL-MaLR	-84718	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
114077	chr19	11100571	11101030	+	0	NA	intron (NM_001195799, intron 2 of 16)	AluY|SINE|Alu	-11141	NR_163945	115271120		NR_163945		LDLR-AS1	-	LDLR antisense RNA 1	ncRNA
41270	chr11	65844151	65844250	+	0	NA	intron (NM_152760, intron 1 of 12)	L1M5|LINE|L1	10237	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
233193	chr9	137206851	137207150	+	0	NA	intron (NM_014434, intron 2 of 13)	L2c|LINE|L2	1300	NM_001144028	27158		NM_014434	ENSG00000188566	NDOR1	CIAE1|NR1|bA350O14.9	NADPH dependent diflavin oxidoreductase 1	protein-coding
195706	chr6	38714571	38714730	+	0	NA	promoter-TSS (NM_001206927)	promoter-TSS (NM_001206927)	-661	NM_001371	1769		NM_001371	ENSG00000124721	DNAH8	ATPase|SPGF46|hdhc9	dynein axonemal heavy chain 8	protein-coding
59123	chr13	21345921	21346430	+	0	NA	intron (NR_046461, intron 2 of 4)	MIRb|SINE|MIR	-1316	NR_103841	100652865		NR_103840	ENSG00000224429	LINC00539	LINC00422	long intergenic non-protein coding RNA 539	ncRNA
217858	chr8	37803401	37803600	+	0	NA	intron (NM_032777, intron 1 of 18)	intron (NM_032777, intron 1 of 18)	6617	NM_032777	25960		NM_032777	ENSG00000020181	ADGRA2	GPR124|TEM5	adhesion G protein-coupled receptor A2	protein-coding
112040	chr19	5129971	5131050	+	0	NA	intron (NM_015015, intron 11 of 22)	intron (NM_015015, intron 11 of 22)	161397	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
202541	chr6	158634371	158636350	+	0	NA	TTS (NM_001376852)	TTS (NM_001376852)	9383	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
84299	chr16	30087251	30088080	+	0	NA	intron (NM_004608, intron 6 of 8)	intron (NM_004608, intron 6 of 8)	4259	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
228542	chr9	101398071	101399750	+	0	NA	promoter-TSS (NM_001278232)	promoter-TSS (NM_001278232)	56	NM_001278240	7743		NM_003452	ENSG00000136870	ZNF189	-	zinc finger protein 189	protein-coding
233342	chr9	137447071	137447650	+	0	NA	TTS (NM_001178064)	TTS (NM_001178064)	2726	NR_106964	102466223		NR_106964	ENSG00000284317	MIR7114	hsa-mir-7114	microRNA 7114	ncRNA
56108	chr12	110737101	110738080	+	0	NA	intron (NM_002710, intron 1 of 6)	intron (NM_002710, intron 1 of 6)	5301	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
21795	chr1	207050601	207051650	+	0	NA	promoter-TSS (NM_018566)	promoter-TSS (NM_018566)	83	NM_018566	55432		NM_018566	ENSG00000180667	YOD1	DUBA8|OTUD2|PRO0907	YOD1 deubiquitinase	protein-coding
72803	chr15	40061371	40061900	+	0	NA	intron (NR_040060, intron 2 of 2)	L2c|LINE|L2	22324	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
70366	chr14	101886221	101886680	+	0	NA	intron (NM_178587, intron 5 of 11)	intron (NM_178587, intron 5 of 11)	76587	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
86020	chr16	57484571	57484730	+	0	NA	intron (NM_001369618, intron 1 of 7)	L2a|LINE|L2	1843	NM_001369618	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
207412	chr7	44375321	44375780	+	0	NA	Intergenic	Intergenic	-49919	NM_172079	816		NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB|CaMKIIbeta|MRD54	calcium/calmodulin dependent protein kinase II beta	protein-coding
130821	chr2	87063701	87064300	+	0	NA	intron (NR_026846, intron 1 of 10)	intron (NR_026846, intron 1 of 10)	12413	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
28963	chr10	63240771	63241250	+	0	NA	intron (NM_001322252, intron 2 of 24)	L1MC5|LINE|L1	28213	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
56460	chr12	115998071	115998450	+	0	NA	intron (NM_015335, intron 14 of 30)	intron (NM_015335, intron 14 of 30)	150394	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
110873	chr19	2627551	2628200	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-2840	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
223679	chr8	144402651	144403350	+	0	NA	intron (NM_013291, intron 2 of 37)	L1M5|LINE|L1	-2655	NR_106908	102466749		NR_106908	ENSG00000283770	MIR6849	hsa-mir-6849	microRNA 6849	ncRNA
125309	chr2	10674971	10675400	+	0	NA	intron (NM_001261392, intron 3 of 19)	AluJr4|SINE|Alu	14790	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
196216	chr6	42780671	42780830	+	0	NA	intron (NM_001318819, intron 1 of 13)	AluSx1|SINE|Alu	-2746	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
165867	chr3	106010951	106011050	+	0	NA	Intergenic	Intergenic	-141599	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
71835	chr15	22202101	22202500	+	0	NA	Intergenic	Intergenic	23029	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
226617	chr9	73173071	73173230	+	0	NA	Intergenic	Intergenic	21285	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
229764	chr9	125192351	125193300	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2886	NM_001123369	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
168593	chr3	149127371	149127950	+	0	NA	Intergenic	(AGGA)n|Simple_repeat|Simple_repeat	-1978	NM_001308258	84343		NM_032383	ENSG00000163755	HPS3	BLOC2S1|SUTAL	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding
21760	chr1	206909071	206910080	+	0	NA	intron (NM_001193338, intron 5 of 6)	CpG-2158	12132	NM_006850	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
155026	chr22	37457171	37457660	+	0	NA	Intergenic	Intergenic	28969	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
190947	chr6	2900411	2902100	+	0	NA	TTS (NR_110841)	TTS (NR_110841)	2054	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
56495	chr12	116263471	116264030	+	0	NA	intron (NM_015335, intron 1 of 30)	intron (NM_015335, intron 1 of 30)	13943	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
56801	chr12	120208071	120208230	+	0	NA	intron (NR_038924, intron 2 of 3)	AluSx1|SINE|Alu	6859	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
32031	chr10	101021921	101022450	+	0	NA	intron (NM_024895, intron 5 of 9)	intron (NM_024895, intron 5 of 9)	8944	NM_001195263	79955		NM_024895	ENSG00000186862	PDZD7	DFNB57|PDZK7	PDZ domain containing 7	protein-coding
82426	chr16	16309471	16311150	+	0	NA	TTS (NR_036141).3	TTS (NR_036141).3	431	NR_036142	100422956		NR_036142	ENSG00000265373	MIR3180-2	mir-3180-2	microRNA 3180-2	ncRNA
192691	chr6	26283121	26283380	+	0	NA	Intergenic	Intergenic	2284	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
139612	chr2	225037501	225038950	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	4243	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
162469	chr3	48507151	48508080	+	0	NA	Intergenic	Intergenic	-2789	NM_001272066	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
52066	chr12	54033851	54034930	+	0	NA	TTS (NR_030753)	TTS (NR_030753)	440	NR_030753	693200		NR_030753	ENSG00000207571	MIR615	MIRN615|hsa-mir-615|mir-615	microRNA 615	ncRNA
204321	chr7	2711101	2712700	+	0	NA	intron (NM_001321766, intron 6 of 6)	AluSx1|SINE|Alu	23698	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
174439	chr4	39697491	39698800	+	0	NA	promoter-TSS (NM_001312648)	promoter-TSS (NM_001312648)	9	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
156625	chr22	41593151	41593450	+	0	NA	Intergenic	MIRc|SINE|MIR	-3460	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
229663	chr9	124347951	124348500	+	0	NA	intron (NM_001166169, intron 9 of 9)	intron (NM_001166169, intron 9 of 9)	-5248	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
209782	chr7	87475171	87476030	+	0	NA	promoter-TSS (NM_000443)	promoter-TSS (NM_000443)	80	NM_018849	5244		NM_000443	ENSG00000005471	ABCB4	ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3	ATP binding cassette subfamily B member 4	protein-coding
191138	chr6	4133751	4134490	+	0	NA	intron (NM_206836, intron 1 of 9)	intron (NM_206836, intron 1 of 9)	1348	NM_001166010	10455		NM_006117	ENSG00000198721	ECI2	ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3	enoyl-CoA delta isomerase 2	protein-coding
60688	chr13	43835771	43835950	+	0	NA	TTS (NM_001350618)	TTS (NM_001350618)	-43318	NM_001128303	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
220290	chr8	98040401	98040600	+	0	NA	Intergenic	Intergenic	1717	NR_002581	26775		NR_002581	ENSG00000207067	SNORA72	RNU72|U72	small nucleolar RNA, H/ACA box 72	snoRNA
11679	chr1	91830401	91831000	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	55451	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
15671	chr1	150929401	150929630	+	0	NA	intron (NM_012432, intron 2 of 21)	AluSz|SINE|Alu	3152	NM_012432	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
9399	chr1	47441651	47442150	+	0	NA	Intergenic	Intergenic	3856	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
226789	chr9	76662971	76663130	+	0	NA	intron (NM_001308047, intron 9 of 17)	intron (NM_001308047, intron 9 of 17)	29365	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
81624	chr16	10868521	10869280	+	0	NA	Intergenic	Intergenic	-8298	NM_000246	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
76548	chr15	75205751	75205850	+	0	NA	intron (NM_015492, intron 1 of 2)	AluJb|SINE|Alu	3918	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
93417	chr17	18409021	18409780	+	0	NA	Intergenic	Intergenic	-1759	NR_104343	400579		NR_104343	ENSG00000220161	LINC02076	-	long intergenic non-protein coding RNA 2076	ncRNA
145245	chr20	38936121	38936380	+	0	NA	intron (NM_030919, intron 1 of 3)	intron (NM_030919, intron 1 of 3)	9833	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
170396	chr3	185176971	185177130	+	0	NA	intron (NR_038990, intron 1 of 6)	intron (NR_038990, intron 1 of 6)	14149	NR_038990	339926		NR_038990	ENSG00000223358	EHHADH-AS1	-	EHHADH antisense RNA 1	ncRNA
219446	chr8	72986851	72987230	+	0	NA	Intergenic	Intergenic	-21824	NM_003218	7013		NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding
77979	chr15	89408901	89409500	+	0	NA	intron (NR_160724, intron 1 of 2)	CpG	9029	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
37106	chr11	13286171	13286530	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	8560	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
215632	chr8	149471	149630	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	17474	NM_001005504	441308		NM_001005504	ENSG00000176269	OR4F21	OR4F21P	olfactory receptor family 4 subfamily F member 21	protein-coding
152178	chr22	20092721	20093830	+	0	NA	intron (NM_022720, intron 8 of 13)	AluY|SINE|Alu	7217	NR_031706	100302197		NR_031706	ENSG00000284464	MIR1306	MIRN1306|hsa-mir-1306|mir-1306	microRNA 1306	ncRNA
228746	chr9	110047921	110048930	+	0	NA	promoter-TSS (NM_001004065)	promoter-TSS (NM_001004065)	-173	NM_001004065	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
199980	chr6	127985801	127986200	+	0	NA	intron (NM_001291981, intron 24 of 32).2	intron (NM_001291981, intron 24 of 32).2	-41865	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
31365	chr10	93554901	93555180	+	0	NA	Intergenic	MIR3|SINE|MIR	-11625	NM_001195755	338557		NM_181745	ENSG00000186188	FFAR4	BMIQ10|GPR120|GPR129|GT01|O3FAR1|OB10Q|PGR4	free fatty acid receptor 4	protein-coding
50861	chr12	49174471	49175200	+	0	NA	Intergenic	AluSc|SINE|Alu	14245	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
167827	chr3	133658451	133658750	+	0	NA	intron (NM_007027, intron 3 of 27)	AluSz6|SINE|Alu	3341	NM_007027	11073		NM_007027	ENSG00000163781	TOPBP1	Dpb11|TOP2BP1	DNA topoisomerase II binding protein 1	protein-coding
85968	chr16	57299121	57300100	+	0	NA	Intergenic	Intergenic	-14938	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
86875	chr16	67973271	67973630	+	0	NA	Intergenic	AluY|SINE|Alu	-4756	NM_001145962	6560		NM_005072	ENSG00000124067	SLC12A4	CTC-479C5.17|KCC1|hKCC1	solute carrier family 12 member 4	protein-coding
29347	chr10	69451121	69451980	+	0	NA	promoter-TSS (NM_012339)	promoter-TSS (NM_012339)	83	NR_147091	23555		NM_012339	ENSG00000099282	TSPAN15	2700063A19Rik|NET-7|NET7|TM4SF15	tetraspanin 15	protein-coding
221858	chr8	128293171	128293330	+	0	NA	Intergenic	Intergenic	143134	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
119206	chr19	39444671	39446100	+	0	NA	promoter-TSS (NM_001319991)	promoter-TSS (NM_001319991)	-161	NM_001130825	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
170841	chr3	190486221	190486580	+	0	NA	Intergenic	Intergenic	-27685	NM_001364881	3556		NM_002182	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
30836	chr10	86412301	86412500	+	0	NA	Intergenic	Intergenic	-45605	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
22195	chr1	212386251	212386550	+	0	NA	intron (NM_001377478, intron 2 of 6)	intron (NM_001377478, intron 2 of 6)	28486	NR_165303	55248		NM_018252	ENSG00000065600	PACC1	ASOR|C1orf75|PAC|PAORAC|TMEM206|hPAC|hTMEM206	proton activated chloride channel 1	protein-coding
166963	chr3	125373271	125373630	+	0	NA	intron (NM_001348427, intron 1 of 9)	intron (NM_001348427, intron 1 of 9)	1259	NM_001348432	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
114142	chr19	11268971	11269130	+	0	NA	Intergenic	Intergenic	-6526	NM_020812	57572		NM_020812	ENSG00000130158	DOCK6	AOS2|ZIR1	dedicator of cytokinesis 6	protein-coding
193268	chr6	29964521	29965500	+	0	NA	Intergenic	Intergenic	-10105	NR_028032	10255		NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9	ncRNA
143937	chr20	32764071	32764230	+	0	NA	intron (NM_175849, intron 1 of 19)	intron (NM_175849, intron 1 of 19)	1765	NM_006892	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
158609	chr3	4845771	4846730	+	0	NA	3' UTR (NM_001378452, exon 62 of 62)	3' UTR (NM_001378452, exon 62 of 62)	60251	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
106184	chr18	10529651	10530150	+	0	NA	intron (NM_003826, intron 1 of 11)	intron (NM_003826, intron 1 of 11)	3873	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
50168	chr12	45980271	45980430	+	0	NA	intron (NM_004719, intron 1 of 14)	intron (NM_004719, intron 1 of 14)	10224	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
140169	chr2	231623401	231623800	+	0	NA	Intergenic	AluSx3|SINE|Alu	30736	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
43383	chr11	77064321	77065130	+	0	NA	Intergenic	MIRc|SINE|MIR	-2246	NM_004055	726		NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
76306	chr15	74365701	74366400	+	0	NA	5' UTR (NM_001099773, exon 1 of 9)	5' UTR (NM_001099773, exon 1 of 9)	144	NM_001099773	1583		NM_000781	ENSG00000140459	CYP11A1	CYP11A|CYPXIA1|P450SCC	cytochrome P450 family 11 subfamily A member 1	protein-coding
28072	chr10	43321471	43321830	+	0	NA	Intergenic	L2|LINE|L2	-49986	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
31390	chr10	94545271	94546550	+	0	NA	5' UTR (NM_001289067, exon 1 of 23)	5' UTR (NM_001289067, exon 1 of 23)	122	NM_018063	3070		NM_018063	ENSG00000119969	HELLS	ICF4|LSH|Nbla10143|PASG|SALNR|SMARCA6	helicase, lymphoid specific	protein-coding
50400	chr12	47318171	47318330	+	0	NA	Intergenic	Intergenic	-10851	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
164741	chr3	69029101	69029580	+	0	NA	intron (NM_001363879, intron 11 of 16)	intron (NM_001363879, intron 11 of 16)	-15656	NM_001278689	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
157066	chr22	42595671	42595830	+	0	NA	intron (NM_001278657, intron 5 of 8)	intron (NM_001278657, intron 5 of 8)	-13739	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
185944	chr5	132956671	132957550	+	0	NA	intron (NM_014423, intron 1 of 20)	AluJr|SINE|Alu	6524	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
103173	chr17	77437921	77438180	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-12699	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
212481	chr7	128534071	128534450	+	0	NA	Intergenic	Intergenic	57512	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
3595	chr1	16234671	16235030	+	0	NA	intron (NM_030907, intron 1 of 4)	AluSp|SINE|Alu	2333	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
22160	chr1	212224101	212224300	+	0	NA	intron (NR_125982, intron 2 of 3)	L2b|LINE|L2	10536	NR_125983	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
22408	chr1	220016051	220016430	+	0	NA	intron (NM_004446, intron 12 of 31)	AluSg|SINE|Alu	30265	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
158959	chr3	10220521	10221580	+	0	NA	intron (NM_001570, intron 8 of 12)	intron (NM_001570, intron 8 of 12)	-27409	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
187236	chr5	141343721	141343980	+	0	NA	promoter-TSS (NM_018916)	promoter-TSS (NM_018916)	21	NM_018916	56112		NM_018916	ENSG00000254245	PCDHGA3	PCDH-GAMMA-A3	protocadherin gamma subfamily A, 3	protein-coding
236113	chrX	57288071	57288230	+	0	NA	intron (NM_174912, intron 1 of 10)	intron (NM_174912, intron 1 of 10)	1296	NR_148564	158584		NM_174912	ENSG00000165591	FAAH2	AMDD	fatty acid amide hydrolase 2	protein-coding
114099	chr19	11121971	11122650	+	0	NA	intron (NM_001195800, intron 12 of 15)	AluY|SINE|Alu	8836	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
154019	chr22	30435071	30436480	+	0	NA	non-coding (NR_148046, exon 4 of 4)	non-coding (NR_148046, exon 4 of 4)	3089	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
169917	chr3	177778571	177779080	+	0	NA	Intergenic	L1MC4|LINE|L1	-38040	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
222823	chr8	142478801	142479200	+	0	NA	intron (NM_001702, intron 7 of 30)	intron (NM_001702, intron 7 of 30)	29351	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
98283	chr17	46217971	46218330	+	0	NA	intron (NM_001193465, intron 2 of 15)	MLT1B|LTR|ERVL-MaLR	7217	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
198324	chr6	101235751	101235850	+	0	NA	Intergenic	L2|LINE|L2	-157908	NM_021956	2898		NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6|NEDLAS	glutamate ionotropic receptor kainate type subunit 2	protein-coding
18359	chr1	161260521	161261180	+	0	NA	intron (NM_001102566, intron 1 of 2)	intron (NM_001102566, intron 1 of 2)	2105	NM_001102566	654790		NM_001102566	ENSG00000248485	PCP4L1	IQM1	Purkinje cell protein 4 like 1	protein-coding
151707	chr22	17501651	17501980	+	0	NA	intron (NM_001290046, intron 5 of 18)	intron (NM_001290046, intron 5 of 18)	-61624	NM_001303484	83733		NM_031481	ENSG00000182902	SLC25A18	GC2	solute carrier family 25 member 18	protein-coding
209586	chr7	77534271	77534750	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-2785	NM_002835	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
126162	chr2	26349551	26349950	+	0	NA	intron (NR_137633, intron 1 of 9)	intron (NR_137633, intron 1 of 9)	-2961	NM_153835	165082		NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding
142504	chr20	4780951	4781050	+	0	NA	3' UTR (NM_014737, exon 12 of 12)	3' UTR (NM_014737, exon 12 of 12)	34123	NM_170774	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
89527	chr16	89182971	89183650	+	0	NA	intron (NM_004933, intron 3 of 13)	L4_C_Mam|LINE|RTE-X	11562	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
91595	chr17	5249451	5249950	+	0	NA	Intergenic	Intergenic	-14840	NM_001271842	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
181886	chr5	54524171	54524330	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	6491	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
66797	chr14	64716371	64717280	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	12401	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
134410	chr2	142867221	142867480	+	0	NA	Intergenic	Intergenic	-10314	NM_001199241	8942		NM_003937	ENSG00000115919	KYNU	KYNUU|VCRL2	kynureninase	protein-coding
191249	chr6	5898651	5898750	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	105344	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
5455	chr1	25618801	25619630	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	2424	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
218464	chr8	48921371	48922150	+	0	NA	promoter-TSS (NM_003068)	promoter-TSS (NM_003068)	-331	NM_003068	6591		NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding
109169	chr19	294301	294530	+	0	NA	Intergenic	Intergenic	-3012	NM_003712	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
239167	chrY	12215371	12215930	+	0	NA	Intergenic	Intergenic	205940	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
49403	chr12	22543501	22544840	+	0	NA	promoter-TSS (NM_001286174)	promoter-TSS (NM_001286174)	27	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
6529	chr1	28571951	28572450	+	0	NA	intron (NM_017846, intron 8 of 8)	AluSp|SINE|Alu	6622	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	small nucleolar RNA, C/D box 99	snoRNA
214992	chr7	152314051	152314430	+	0	NA	intron (NM_170606, intron 4 of 58)	intron (NM_170606, intron 4 of 58)	121763	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
188531	chr5	155885201	155885600	+	0	NA	Intergenic	Intergenic	-441764	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
98076	chr17	45562721	45562980	+	0	NA	Intergenic	Intergenic	39012	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
120456	chr19	44644601	44644800	+	0	NA	intron (NM_001135768, intron 1 of 7)	intron (NM_001135768, intron 1 of 7)	790	NM_006505	5817		NM_006505	ENSG00000073008	PVR	CD155|HVED|NECL5|Necl-5|PVS|TAGE4	PVR cell adhesion molecule	protein-coding
91560	chr17	5075301	5076380	+	0	NA	Intergenic	Intergenic	-2627	NM_153018	124961		NM_153018	ENSG00000180787	ZFP3	ZNF752	ZFP3 zinc finger protein	protein-coding
188816	chr5	158874651	158874950	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	223156	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
158731	chr3	8768101	8768300	+	0	NA	5' UTR (NM_001354654, exon 3 of 4)	5' UTR (NM_001354654, exon 3 of 4)	531	NM_001354656	5021		NM_000916	ENSG00000180914	OXTR	OT-R|OTR	oxytocin receptor	protein-coding
95056	chr17	32575751	32576080	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	88922	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
83181	chr16	23483501	23484550	+	0	NA	intron (NM_015044, intron 8 of 16)	AluSx|SINE|Alu	26469	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
113625	chr19	10321571	10322930	+	0	NA	intron (NM_133452, intron 6 of 12)	intron (NM_133452, intron 6 of 12)	-6235	NM_001031734	112812		NM_080665	ENSG00000267673	FDX2	FDX1L|MEOAL	ferredoxin 2	protein-coding
234434	chrX	16858271	16858430	+	0	NA	intron (NM_002893, intron 4 of 11)	MER68|LTR|ERVL	11513	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
174876	chr4	48741601	48741800	+	0	NA	intron (NM_015030, intron 1 of 63)	(AAT)n|Simple_repeat|Simple_repeat	38579	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
173923	chr4	25318201	25318450	+	0	NA	intron (NM_024936, intron 3 of 12)	intron (NM_024936, intron 3 of 12)	5551	NM_024936	29063		NM_014150	ENSG00000168228	ZCCHC4	HSPC052|ZGRF4	zinc finger CCHC-type containing 4	protein-coding
5181	chr1	24944001	24944280	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-13864	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
105152	chr17	82250771	82251300	+	0	NA	intron (NM_139062, intron 6 of 9)	intron (NM_139062, intron 6 of 9)	14367	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
57444	chr12	121903051	121903430	+	0	NA	intron (NR_048555, intron 3 of 4)	MLT1A0|LTR|ERVL-MaLR	14450	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
46428	chr11	127782071	127782250	+	0	NA	Intergenic	L1PA2|LINE|L1	-426606	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
191027	chr6	3152551	3153230	+	0	NA	TTS (NM_001069)	TTS (NM_001069)	4654	NM_001310315	7280		NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
44745	chr11	111982001	111982230	+	0	NA	intron (NM_033425, intron 2 of 15)	intron (NM_033425, intron 2 of 15)	4806	NM_033425	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
14346	chr1	143979201	143979550	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-5856	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
85324	chr16	50028051	50028150	+	0	NA	intron (NR_104043, intron 2 of 4)	AluSx1|SINE|Alu	2894	NM_153261	255919		NM_153261	ENSG00000205423	CNEP1R1	C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding
181507	chr5	43021451	43021750	+	0	NA	intron (NR_104651, intron 2 of 2)	LTR8A|LTR|ERV1	-1957	NR_104650	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
224245	chr9	5853221	5853680	+	0	NA	Intergenic	Intergenic	-20333	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
17810	chr1	159827101	159828530	+	0	NA	intron (NM_001330741, intron 1 of 3)	intron (NM_001330741, intron 1 of 3)	942	NM_020125	56833		NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
160776	chr3	32882651	32882950	+	0	NA	intron (NM_001039111, intron 2 of 3)	AluJb|SINE|Alu	64803	NM_001039111	131405		NM_001039111	ENSG00000206557	TRIM71	HYC4|HYDCC1|LIN-41|LIN41	tripartite motif containing 71	protein-coding
15379	chr1	150157621	150158680	+	0	NA	intron (NM_016274, intron 5 of 5)	intron (NM_016274, intron 5 of 5)	-2578	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
11371	chr1	89642821	89643480	+	0	NA	intron (NM_032270, intron 1 of 2)	AluJb|SINE|Alu	10030	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
4330	chr1	20489921	20490180	+	0	NA	Intergenic	Intergenic	-3840	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
19753	chr1	181430421	181430680	+	0	NA	Intergenic	MER61F|LTR|ERV1	-52967	NM_001205293	777		NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|DEE69|EIEE69|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
76937	chr15	78072421	78073280	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	4802	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
83888	chr16	28961271	28961430	+	0	NA	intron (NM_032815, intron 7 of 7)	AluJo|SINE|Alu	2767	NR_039742	100616487		NR_039742	ENSG00000284541	MIR4517	mir-4517	microRNA 4517	ncRNA
77602	chr15	85308671	85309030	+	0	NA	Intergenic	AluSz|SINE|Alu	68499	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
11902	chr1	93344051	93344150	+	0	NA	intron (NR_034089, intron 1 of 8)	AluSx1|SINE|Alu	1711	NR_034089	100131564		NR_034089		CCDC18-AS1	-	CCDC18 antisense RNA 1	ncRNA
69259	chr14	93035951	93036800	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	599	NM_001363707	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
59316	chr13	24302251	24302600	+	0	NA	intron (NM_153023, intron 11 of 11)	AluJb|SINE|Alu	-4741	NM_001303138	338872		NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and TNF related 9	protein-coding
236736	chrX	78133251	78133980	+	0	NA	intron (NM_015975, intron 5 of 6)	intron (NM_015975, intron 5 of 6)	6035	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
1615	chr1	3676701	3677650	+	0	NA	intron (NM_001204185, intron 1 of 12)	intron (NM_001204185, intron 1 of 12)	-13497	NM_001204190	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
209807	chr7	87886351	87886450	+	0	NA	intron (NM_001318060, intron 3 of 10)	AluSg|SINE|Alu	9907	NM_006716	10926		NM_006716	ENSG00000006634	DBF4	ASK|CHIF|DBF4A|ZDBF1	DBF4-CDC7 kinase regulatory subunit	protein-coding
139809	chr2	230335421	230336400	+	0	NA	intron (NM_138402, intron 2 of 18)	MER41E|LTR|ERV1	8717	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
148730	chr21	7129621	7130450	+	0	NA	Intergenic	Intergenic	65609	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
93650	chr17	19186501	19186800	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1366	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
167545	chr3	129328571	129329350	+	0	NA	Intergenic	AluY|SINE|Alu	-12674	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
9820	chr1	53942521	53943030	+	0	NA	intron (NM_001382249, intron 1 of 4)	L2c|LINE|L2	2924	NR_167994	51668		NM_016126	ENSG00000081870	IFT25	C1orf41|CFAP232|FAP232|HSPB11|HSPCO34|PP25	intraflagellar transport 25	protein-coding
82847	chr16	21512771	21513300	+	0	NA	Intergenic	Intergenic	-6900	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
185022	chr5	115541451	115541780	+	0	NA	intron (NM_020177, intron 2 of 2)	L1ME4b|LINE|L1	3160	NM_020177	56929		NM_020177	ENSG00000145780	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog C	protein-coding
25052	chr10	3777971	3779650	+	0	NA	non-coding (NR_027653, exon 4 of 4)	non-coding (NR_027653, exon 4 of 4)	6399	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
193296	chr6	30075101	30076680	+	0	NA	promoter-TSS (NM_170769)	promoter-TSS (NM_170769)	-39	NM_025236	80352		NM_025236	ENSG00000204618	RNF39	FAP216|HZF|HZFW|LIRF	ring finger protein 39	protein-coding
90494	chr17	1446051	1446550	+	0	NA	intron (NM_016823, intron 1 of 2)	intron (NM_016823, intron 1 of 2)	9932	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
76455	chr15	74837021	74838150	+	0	NA	intron (NR_104308, intron 13 of 14)	intron (NR_104308, intron 13 of 14)	3122	NR_106942	102465531		NR_106942	ENSG00000275411	MIR6882	hsa-mir-6882	microRNA 6882	ncRNA
3897	chr1	17075471	17075630	+	0	NA	intron (NM_007365, intron 12 of 15)	intron (NM_007365, intron 12 of 15)	-21518	NM_003000	6390		NM_003000	ENSG00000117118	SDHB	CWS2|IP|MC2DN4|PGL4|PPGL4|SDH|SDH1|SDH2|SDHIP	succinate dehydrogenase complex iron sulfur subunit B	protein-coding
42411	chr11	69055601	69056650	+	0	NA	intron (NM_139075, intron 4 of 24)	intron (NM_139075, intron 4 of 24)	7193	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
223697	chr8	144430201	144431830	+	0	NA	intron (NM_013432, intron 24 of 25)	intron (NM_013432, intron 24 of 25)	-2452	NM_183057	51160		NM_016208	ENSG00000160948	VPS28	CIIA	VPS28 subunit of ESCRT-I	protein-coding
4948	chr1	23971171	23971530	+	0	NA	exon (NM_054016, exon 6 of 6)	exon (NM_054016, exon 6 of 6)	8977	NM_001191009	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
161574	chr3	42847051	42847400	+	0	NA	intron (NM_001296, intron 2 of 2)	intron (NM_001296, intron 2 of 2)	28654	NM_004391	1582		NM_004391	ENSG00000180432	CYP8B1	CP8B|CYP12|CYPVIIIB1	cytochrome P450 family 8 subfamily B member 1	protein-coding
114393	chr19	12612351	12613120	+	0	NA	intron (NM_153358, intron 1 of 3)	AluSc5|SINE|Alu	1815	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
154313	chr22	31958151	31958250	+	0	NA	TTS (NM_003405)	TTS (NM_003405)	-12623	NR_149128	105372999		NR_149128		LINC02558	-	long intergenic non-protein coding RNA 2558	ncRNA
25544	chr10	7410421	7413150	+	0	NA	promoter-TSS (NM_001029880)	promoter-TSS (NM_001029880)	-299	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
9483	chr1	51002751	51002850	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	32555	NM_078626	1031		NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	cyclin dependent kinase inhibitor 2C	protein-coding
142165	chr20	2838151	2838450	+	0	NA	exon (NM_001271168, exon 6 of 8)	exon (NM_001271168, exon 6 of 8)	2355	NM_022760	64773		NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
39999	chr11	62637621	62638280	+	0	NA	intron (NM_001278193, intron 1 of 20)	L1ME3F|LINE|L1	2268	NM_001329224	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
217970	chr8	38347821	38348680	+	0	NA	intron (NM_017778, intron 1 of 9)	intron (NM_017778, intron 1 of 9)	34021	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
168020	chr3	136884051	136884630	+	0	NA	intron (NM_001291999, intron 1 of 3)	intron (NM_001291999, intron 1 of 3)	22132	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
216265	chr8	12449401	12450080	+	0	NA	intron (NR_040092, intron 4 of 5)	intron (NR_040092, intron 4 of 5)	12727	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
157098	chr22	42630551	42631250	+	0	NA	exon (NM_007326, exon 4 of 9)	exon (NM_007326, exon 4 of 9)	9701	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
117018	chr19	18914701	18914950	+	0	NA	intron (NM_007263, intron 1 of 9)	AluSx4|SINE|Alu	4562	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
195502	chr6	37179301	37180050	+	0	NA	Intergenic	AluSz|SINE|Alu	9523	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
150884	chr21	44134871	44135530	+	0	NA	intron (NM_198155, intron 2 of 5).2	intron (NM_198155, intron 2 of 5).2	1517	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
182066	chr5	55948901	55949500	+	0	NA	intron (NR_157112, intron 14 of 17)	AluJr4|SINE|Alu	45763	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
227121	chr9	86074001	86074200	+	0	NA	intron (NM_016548, intron 3 of 9)	intron (NM_016548, intron 3 of 9)	25458	NM_016548	51280		NM_016548	ENSG00000135052	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
195935	chr6	41919051	41919550	+	0	NA	intron (NM_004275, intron 1 of 3)	intron (NM_004275, intron 1 of 3)	1643	NM_001305456	9477		NM_004275	ENSG00000124641	MED20	PRO0213|SRB2|TRFP	mediator complex subunit 20	protein-coding
152236	chr22	20161421	20162400	+	0	NA	Intergenic	Intergenic	-10855	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
36624	chr11	7511521	7511780	+	0	NA	TTS (NM_198474)	TTS (NM_198474)	-2349	NM_001351854	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
126934	chr2	33322421	33322680	+	0	NA	intron (NM_001166266, intron 20 of 28)	intron (NM_001166266, intron 20 of 28)	-95966	NR_039628	100616136		NR_039628	ENSG00000283591	MIR4430	-	microRNA 4430	ncRNA
218008	chr8	38429501	38429900	+	0	NA	exon (NM_001174065, exon 3 of 18)	exon (NM_001174065, exon 3 of 18)	38024	NM_001174066	2260		NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
239239	chrY	12957621	12957880	+	0	NA	Intergenic	MER66-int|LTR|ERV1	52045	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
163594	chr3	51976771	51976930	+	0	NA	intron (NM_001316331, intron 1 of 16)	MIR|SINE|MIR	1786	NM_001316331	100526760		NM_001316331	ENSG00000114786	ABHD14A-ACY1	-	ABHD14A-ACY1 readthrough	protein-coding
109237	chr19	504401	504600	+	0	NA	intron (NM_130760, intron 4 of 4)	AluSg4|SINE|Alu	-2997	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
215083	chr7	154969471	154969630	+	0	NA	intron (NM_007349, intron 6 of 20)	intron (NM_007349, intron 6 of 20)	33574	NM_007349	22976		NM_007349	ENSG00000157212	PAXIP1	CAGF28|CAGF29|PACIP1|PAXIP1L|PTIP|TNRC2	PAX interacting protein 1	protein-coding
88312	chr16	84186351	84187650	+	0	NA	promoter-TSS (NM_001243157)	promoter-TSS (NM_001243157)	57	NM_001243160	9013		NM_005679	ENSG00000103168	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	TATA-box binding protein associated factor, RNA polymerase I subunit C	protein-coding
162745	chr3	49050401	49050600	+	0	NA	intron (NM_001320580, intron 4 of 10)	intron (NM_001320580, intron 4 of 10)	-21102	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
32945	chr10	110364021	110364280	+	0	NA	Intergenic	Intergenic	-59230	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
26519	chr10	21406721	21407430	+	0	NA	Intergenic	L1M6|LINE|L1	-34125	NR_155751	105376444		NR_155751	ENSG00000230109	LINC02643	-	long intergenic non-protein coding RNA 2643	ncRNA
108927	chr18	79461651	79462150	+	0	NA	intron (NM_172389, intron 7 of 9)	CpG	61601	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
238929	chrX	154744251	154744750	+	0	NA	intron (NR_104114, intron 1 of 8)	L1MEc|LINE|L1	6577	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
95128	chr17	35021951	35022050	+	0	NA	intron (NM_001017368, intron 2 of 6)	intron (NM_001017368, intron 2 of 6)	41488	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
214485	chr7	150404321	150406430	+	0	NA	promoter-TSS (NR_027237)	promoter-TSS (NR_027237)	-377	NR_027237	728743		NM_001080852	ENSG00000284691	LOC728743	-	zinc finger domain-containing protein LOC728743	protein-coding
88588	chr16	85578551	85578850	+	0	NA	Intergenic	Intergenic	-32709	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
148366	chr20	63861851	63862330	+	0	NA	non-coding (NR_165312, exon 1 of 1)	non-coding (NR_165312, exon 1 of 1)	592	NM_080622	140701		NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
191276	chr6	6407321	6407580	+	0	NA	intron (NR_026970, intron 4 of 7)	Tigger6a|DNA|TcMar-Tigger	-86788	NM_000129	2162		NM_000129	ENSG00000124491	F13A1	F13A	coagulation factor XIII A chain	protein-coding
221677	chr8	126342171	126342330	+	0	NA	Intergenic	L1PA3|LINE|L1	16755	NR_125421	101927657		NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
116631	chr19	18301521	18302180	+	0	NA	Intergenic	Intergenic	19773	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
236360	chrX	70470871	70471300	+	0	NA	intron (NM_001166278, intron 1 of 11)	intron (NM_001166278, intron 1 of 11)	-15091	NR_109801	100873930		NR_046586	ENSG00000231651	DLG3-AS1	-	DLG3 antisense RNA 1	ncRNA
175470	chr4	73038901	73039130	+	0	NA	Intergenic	Intergenic	30701	NM_173827	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
214618	chr7	150721471	150722100	+	0	NA	3' UTR (NM_130759, exon 3 of 3)	3' UTR (NM_130759, exon 3 of 3)	5172	NM_130759	170575		NM_130759	ENSG00000213203	GIMAP1	HIMAP1|IAN2|IMAP1|IMAP38	GTPase, IMAP family member 1	protein-coding
91829	chr17	7186371	7186680	+	0	NA	TTS (NM_001321077)	TTS (NM_001321077)	-6961	NM_001197216	432		NM_001671	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
95821	chr17	38754371	38754930	+	0	NA	intron (NR_104195, intron 2 of 5).2	intron (NR_104195, intron 2 of 5).2	1909	NR_104195	5691		NM_002795	ENSG00000277791	PSMB3	HC10-II	proteasome 20S subunit beta 3	protein-coding
101342	chr17	66860351	66860450	+	0	NA	intron (NM_001371476, intron 1 of 4)	L1M4b|LINE|L1	25283	NM_145811	27091		NM_014404	ENSG00000075429	CACNG5	-	calcium voltage-gated channel auxiliary subunit gamma 5	protein-coding
42150	chr11	67711851	67712230	+	0	NA	Intergenic	CpG	-30816	NM_001031615	222		NM_000695	ENSG00000132746	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family member B2	protein-coding
4712	chr1	23177301	23178180	+	0	NA	Intergenic	CpG	-8882	NM_001142546	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
184117	chr5	94552051	94552150	+	0	NA	intron (NM_001385729, intron 2 of 5)	L1M2|LINE|L1	66025	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
80305	chr16	2270101	2270300	+	0	NA	promoter-TSS (NR_037448)	promoter-TSS (NR_037448)	-513	NR_037448	100500812		NR_037448	ENSG00000266643	MIR3677	mir-3677	microRNA 3677	ncRNA
60887	chr13	46137421	46137680	+	0	NA	intron (NM_002298, intron 13 of 15)	intron (NM_002298, intron 13 of 15)	-32474	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
27711	chr10	33264251	33264700	+	0	NA	intron (NR_045259, intron 2 of 15)	intron (NR_045259, intron 2 of 15)	70192	NM_001330068	8829		NM_003873	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
138022	chr2	201279901	201280100	+	0	NA	intron (NR_111983, intron 7 of 8)	HAL1|LINE|L1	19464	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
19086	chr1	170967071	170967330	+	0	NA	intron (NM_025063, intron 7 of 14)	intron (NM_025063, intron 7 of 14)	31666	NM_025063	80133		NM_025063	ENSG00000117501	MROH9	ARMC11|C1orf129	maestro heat like repeat family member 9	protein-coding
56962	chr12	120531071	120531700	+	0	NA	Intergenic	AluJb|SINE|Alu	-2227	NM_032314	84274		NM_032314	ENSG00000110871	COQ5	COQ10D9	coenzyme Q5, methyltransferase	protein-coding
15177	chr1	149115571	149115730	+	0	NA	Intergenic	AluY|SINE|Alu	-33339	NM_001037675	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
140237	chr2	231786001	231786850	+	0	NA	promoter-TSS (NM_001282952)	promoter-TSS (NM_001282952)	-20	NM_022730	64708		NM_022730	ENSG00000144524	COPS7B	CSN7B|SGN7b	COP9 signalosome subunit 7B	protein-coding
190968	chr6	2960171	2960330	+	0	NA	intron (NM_001297700, intron 1 of 6)	intron (NM_001297700, intron 1 of 6)	1880	NM_001271825	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
155299	chr22	38177121	38177650	+	0	NA	intron (NM_001199562, intron 1 of 15)	intron (NM_001199562, intron 1 of 15)	4445	NM_001199562	8398		NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
115219	chr19	14493921	14494530	+	0	NA	intron (NM_005716, intron 1 of 8)	AluSg|SINE|Alu	1902	NM_202470	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
6879	chr1	31334371	31334530	+	0	NA	intron (NM_001282571, intron 3 of 6)	intron (NM_001282571, intron 3 of 6)	37418	NM_016505	51538		NM_016505	ENSG00000121766	ZCCHC17	HSPC251|PS1D|pNO40	zinc finger CCHC-type containing 17	protein-coding
31020	chr10	88824851	88825630	+	0	NA	intron (NM_144590, intron 4 of 5)	intron (NM_144590, intron 4 of 5)	22510	NM_001128215	340654		NM_001128215	ENSG00000173239	LIPM	LIPL3|bA304I5.1	lipase family member M	protein-coding
165848	chr3	105857921	105858330	+	0	NA	intron (NM_001321811, intron 2 of 16)	intron (NM_001321811, intron 2 of 16)	9466	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
209301	chr7	75996771	75996930	+	0	NA	intron (NR_134487, intron 6 of 6)	MIR|SINE|MIR	-2255	NM_031925	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
69779	chr14	99179871	99180550	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	91987	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
16594	chr1	155046151	155046650	+	0	NA	exon (NM_001143687, exon 12 of 16)	exon (NM_001143687, exon 12 of 16)	4765	NR_040772	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
70876	chr14	103819951	103820250	+	0	NA	intron (NM_015316, intron 1 of 16)	intron (NM_015316, intron 1 of 16)	27475	NM_015316	23368		NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
65353	chr14	50363641	50364500	+	0	NA	intron (NM_001282236, intron 2 of 8)	intron (NM_001282236, intron 2 of 8)	32811	NM_001367065	8814		NM_004196	ENSG00000100490	CDKL1	KKIALRE|P42	cyclin dependent kinase like 1	protein-coding
17458	chr1	156702101	156702780	+	0	NA	intron (NM_001878, intron 1 of 3)	AluSg|SINE|Alu	3143	NM_001878	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
40577	chr11	64360011	64360850	+	0	NA	intron (NM_003942, intron 3 of 16)	intron (NM_003942, intron 3 of 16)	1268	NM_003942	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
94468	chr17	29264571	29264730	+	0	NA	intron (NM_020772, intron 3 of 3)	intron (NM_020772, intron 3 of 3)	17791	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
63499	chr13	114221401	114221600	+	0	NA	Intergenic	L1MB7|LINE|L1	-13345	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
46646	chr11	128692251	128692350	+	0	NA	intron (NR_038908, intron 2 of 2)	intron (NR_038908, intron 2 of 2)	-1616	NM_001167681	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
209034	chr7	74605201	74605400	+	0	NA	Intergenic	Intergenic	9332	NR_162116	113218504		NR_162116		MIR10525	-	microRNA 10525	ncRNA
95783	chr17	38703581	38704350	+	0	NA	non-coding (NR_158157, exon 2 of 2).2	non-coding (NR_158157, exon 2 of 2).2	-1308	NM_005937	4302		NM_005937	ENSG00000275023	MLLT6	AF17	MLLT6, PHD finger containing	protein-coding
228779	chr9	111485371	111485530	+	0	NA	Intergenic	Intergenic	-1067	NM_001363756	23392		NM_001080398	ENSG00000136813	ECPAS	ECM29|KIAA0368	Ecm29 proteasome adaptor and scaffold	protein-coding
94100	chr17	27759851	27760630	+	0	NA	intron (NM_000625, intron 24 of 26)	intron (NM_000625, intron 24 of 26)	40289	NM_000625	4843		NM_000625	ENSG00000007171	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2	protein-coding
19273	chr1	172719421	172720130	+	0	NA	Intergenic	(CTTTT)n|Simple_repeat|Simple_repeat	60672	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
68373	chr14	77760381	77762180	+	0	NA	promoter-TSS (NM_012245)	promoter-TSS (NM_012245)	-124	NM_012245	22938		NM_012245	ENSG00000100603	SNW1	Bx42|FUN20|NCOA-62|PRPF45|Prp45|SKIIP|SKIP|SKIP1	SNW domain containing 1	protein-coding
54194	chr12	79847701	79847930	+	0	NA	intron (NM_001143885, intron 3 of 25)	intron (NM_001143885, intron 3 of 25)	66096	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
208242	chr7	65480651	65480850	+	0	NA	Intergenic	L1PA4|LINE|L1	74315	NR_157837	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
147704	chr20	62353051	62353350	+	0	NA	exon (NM_005560, exon 3 of 80)	exon (NM_005560, exon 3 of 80)	190	NR_109922	101928158		NR_109922	ENSG00000228812	LAMA5-AS1	-	LAMA5 antisense RNA 1	ncRNA
222241	chr8	133154001	133154200	+	0	NA	Intergenic	Intergenic	-36939	NM_001204869	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
58630	chr12	132501221	132502050	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	-3771	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
129425	chr2	69386551	69388000	+	0	NA	promoter-TSS (NM_002056)	promoter-TSS (NM_002056)	-48	NM_001244710	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
68425	chr14	81217601	81217800	+	0	NA	intron (NM_201595, intron 1 of 8)	AluJb|SINE|Alu	3259	NM_001278940	2957		NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding
190996	chr6	3055871	3056650	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-7707	NM_001317061	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
7893	chr1	36482721	36483030	+	0	NA	promoter-TSS (NM_000760)	promoter-TSS (NM_000760)	38	NM_172313	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
209978	chr7	92825171	92825530	+	0	NA	intron (NM_001145306, intron 2 of 7)	L2a|LINE|L2	8609	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
50679	chr12	48856451	48856930	+	0	NA	TTS (NM_014470)	TTS (NM_014470)	-4527	NM_004818	9416		NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
20987	chr1	202644721	202645450	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	-1632	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
109010	chr18	79711171	79711530	+	0	NA	intron (NM_001318511, intron 6 of 11)	intron (NM_001318511, intron 6 of 11)	29920	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
219511	chr8	73978471	73978830	+	0	NA	intron (NM_017866, intron 1 of 2)	AluSx1|SINE|Alu	2455	NM_017866	54968		NM_017866	ENSG00000175606	TMEM70	MC5DN2	transmembrane protein 70	protein-coding
230403	chr9	128111921	128112180	+	0	NA	non-coding (NR_033374, exon 5 of 5)	non-coding (NR_033374, exon 5 of 5)	6684	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
47708	chr12	6447571	6447730	+	0	NA	intron (NR_015382, intron 3 of 5)	L1PA5|LINE|L1	2695	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
116709	chr19	18445121	18445380	+	0	NA	exon (NM_006532, exon 11 of 12)	exon (NM_006532, exon 11 of 12)	-7117	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
79242	chr16	391421	393450	+	0	NA	non-coding (NR_024453, exon 3 of 3)	non-coding (NR_024453, exon 3 of 3)	-4294	NM_001286436	4833		NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
201943	chr6	151675571	151676130	+	0	NA	intron (NM_001385568, intron 1 of 9)	intron (NM_001385568, intron 1 of 9)	-14677	NM_001122742	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
138944	chr2	218250301	218250500	+	0	NA	intron (NM_152862, intron 10 of 10)	AluSg7|SINE|Alu	-9096	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
80456	chr16	2680071	2680980	+	0	NA	Intergenic	Intergenic	-1998	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
219836	chr8	81795251	81795880	+	0	NA	Intergenic	Intergenic	46620	NR_145473	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
103720	chr17	78835651	78836300	+	0	NA	intron (NM_001385178, intron 2 of 19)	intron (NM_001385178, intron 2 of 19)	4839	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
178177	chr4	142379321	142380200	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	23373	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
18157	chr1	160776351	160776450	+	0	NA	Intergenic	Intergenic	-19774	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
101193	chr17	65393421	65393880	+	0	NA	Intergenic	Intergenic	-63891	NR_131984	105827617		NR_131984	ENSG00000263520	LINC02563	CRAT40	long intergenic non-protein coding RNA 2563	ncRNA
45062	chr11	117057371	117057900	+	0	NA	intron (NM_001281748, intron 1 of 24)	L2b|LINE|L2	40793	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
170347	chr3	184543521	184544780	+	0	NA	Intergenic	Intergenic	12768	NR_046593	100874079		NR_046593	ENSG00000230215	LINC01840	EIF2B5-AS1	long intergenic non-protein coding RNA 1840	ncRNA
12539	chr1	108590621	108591550	+	0	NA	intron (NM_001010883, intron 1 of 10)	intron (NM_001010883, intron 1 of 10)	30985	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
215389	chr7	157474671	157474850	+	0	NA	intron (NR_110157, intron 2 of 3)	L1MEf|LINE|L1	8529	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
238194	chrX	136954221	136954900	+	0	NA	Intergenic	AluJb|SINE|Alu	-73780	NR_028476	27316		NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|MRXSG|MRXSH|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein X-linked	protein-coding
144161	chr20	34062551	34062650	+	0	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	13481	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
96207	chr17	39764221	39764880	+	0	NA	3' UTR (NM_001257414, exon 5 of 5)	3' UTR (NM_001257414, exon 5 of 5)	13675	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
182098	chr5	56037701	56037900	+	0	NA	Intergenic	Intergenic	42633	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
219497	chr8	73947351	73947530	+	0	NA	intron (NM_001204859, intron 4 of 4)	MLT1B|LTR|ERVL-MaLR	24468	NM_001204861	6921		NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
200590	chr6	136583051	136583430	+	0	NA	intron (NM_005923, intron 24 of 29)	intron (NM_005923, intron 24 of 29)	-32421	NM_003980	9053		NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
226910	chr9	79569101	79569450	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-2498	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
36977	chr11	11843331	11843830	+	0	NA	intron (NM_001372101, intron 1 of 26)	intron (NM_001372101, intron 1 of 26)	1608	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
150011	chr21	37087101	37087300	+	0	NA	intron (NM_003316, intron 1 of 45)	intron (NM_003316, intron 1 of 45)	4253	NM_003316	7267		NM_003316	ENSG00000182670	TTC3	DCRR1|RNF105|TPRDIII	tetratricopeptide repeat domain 3	protein-coding
110091	chr19	1523371	1524700	+	0	NA	promoter-TSS (NM_001243079)	promoter-TSS (NM_001243079)	-42	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
202416	chr6	157890751	157891050	+	0	NA	intron (NM_016224, intron 4 of 17)	L1ME2z|LINE|L1	67654	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
147603	chr20	62067201	62067400	+	0	NA	Intergenic	Intergenic	-1490	NM_003185	6874		NM_003185	ENSG00000130699	TAF4	MRD73|TAF(II)130|TAF(II)135|TAF2C|TAF2C1|TAF4A|TAFII-130|TAFII-135|TAFII130|TAFII135	TATA-box binding protein associated factor 4	protein-coding
33113	chr10	111207671	111207830	+	0	NA	Intergenic	Intergenic	93459	NR_159949	113633881		NR_159949		HEAT2	lnc-ADRA2A-1:1	HEart disease Associated Transcript 2	ncRNA
126078	chr2	25798821	25799080	+	0	NA	intron (NM_018263, intron 4 of 11)	L1MC1|LINE|L1	-4259	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
170223	chr3	184176371	184176980	+	0	NA	intron (NM_001025205, intron 1 of 10)	intron (NM_001025205, intron 1 of 10)	1820	NM_004068	1173		NM_004068	ENSG00000161203	AP2M1	AP50|CLAPM1|MRD60|mu2	adaptor related protein complex 2 subunit mu 1	protein-coding
65634	chr14	52307371	52308030	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	-6612	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
167321	chr3	128734521	128735130	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	8642	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
160749	chr3	32501971	32503430	+	0	NA	exon (NM_017801, exon 1 of 4)	exon (NM_017801, exon 1 of 4)	152	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
53940	chr12	71780001	71780560	+	0	NA	intron (NM_014999, intron 4 of 6)	intron (NM_014999, intron 4 of 6)	25417	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
24087	chr1	235336371	235337580	+	0	NA	intron (NM_001371477, intron 2 of 3)	intron (NM_001371477, intron 2 of 3)	7967	NM_001371478	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
190640	chr5	181220771	181222700	+	0	NA	TTS (NR_039781)	TTS (NR_039781)	898	NR_039781	100616342		NR_039781	ENSG00000264732	MIR4638	mir-4638	microRNA 4638	ncRNA
164412	chr3	58532651	58533400	+	0	NA	intron (NM_003500, intron 5 of 14)	intron (NM_003500, intron 5 of 14)	4165	NM_003500	8309		NM_003500	ENSG00000168306	ACOX2	BCOX|BRCACOX|BRCOX|CBAS6|THCCox	acyl-CoA oxidase 2	protein-coding
29149	chr10	68669051	68669150	+	0	NA	intron (NM_030625, intron 7 of 11)	AluJr4|SINE|Alu	-52139	NM_001282960	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
135531	chr2	162301151	162301680	+	0	NA	intron (NM_022168, intron 3 of 15)	intron (NM_022168, intron 3 of 15)	17269	NM_022168	64135		NM_022168	ENSG00000115267	IFIH1	AGS7|Hlcd|IDDM19|IMD95|MDA-5|MDA5|RLR-2|SGMRT1	interferon induced with helicase C domain 1	protein-coding
13055	chr1	111446051	111446550	+	0	NA	intron (NM_001317064, intron 2 of 7)	Tigger12c|DNA|TcMar-Tigger	2956	NM_024102	79084		NM_024102	ENSG00000116455	WDR77	HKMT1069|MEP-50|MEP50|Nbla10071|p44|p44/Mep50	WD repeat domain 77	protein-coding
140010	chr2	230981571	230982350	+	0	NA	Intergenic	L2b|LINE|L2	14072	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
148398	chr20	63933601	63933800	+	0	NA	3' UTR (NM_025219, exon 5 of 5)	3' UTR (NM_025219, exon 5 of 5)	7844	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
85094	chr16	33337801	33338380	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-7749	NR_158162	105369266		NR_158162		LOC105369266	-	uncharacterized LOC105369266	ncRNA
7364	chr1	32804201	32804600	+	0	NA	intron (NM_003680, intron 4 of 12)	SVA_B|Retroposon|SVA	-13042	NM_001256121	64766		NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding
135816	chr2	170324671	170324830	+	0	NA	intron (NR_045682, intron 7 of 35)	LTR41C|LTR|ERVL	26193	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
12768	chr1	109638671	109638830	+	0	NA	Intergenic	MIR|SINE|MIR	14762	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
154160	chr22	31286221	31288050	+	0	NA	intron (NM_001135911, intron 4 of 4)	AluJb|SINE|Alu	5353	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
9570	chr1	51768771	51769200	+	0	NA	intron (NM_024586, intron 12 of 23)	intron (NM_024586, intron 12 of 23)	39135	NM_001350210	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
217699	chr8	30130501	30131280	+	0	NA	TTS (NM_001100916)	TTS (NM_001100916)	13775	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
147953	chr20	62962001	62962200	+	0	NA	intron (NM_022082, intron 4 of 12)	intron (NM_022082, intron 4 of 12)	9391	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
47342	chr12	1831001	1831380	+	0	NA	exon (NM_001163926, exon 4 of 5)	exon (NM_001163926, exon 4 of 5)	10625	NM_001039029	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
174849	chr4	48633021	48633280	+	0	NA	intron (NM_015030, intron 4 of 63)	intron (NM_015030, intron 4 of 63)	142898	NM_175619	326340		NM_175619	ENSG00000182223	ZAR1	Z3CXXC6	zygote arrest 1	protein-coding
188698	chr5	157301121	157301380	+	0	NA	intron (NM_014376, intron 6 of 30)	MLT1K|LTR|ERVL-MaLR	31926	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
96867	chr17	42051671	42052030	+	0	NA	intron (NM_001378270, intron 2 of 8)	intron (NM_001378270, intron 2 of 8)	-1249	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
181495	chr5	42993301	42994200	+	0	NA	promoter-TSS (NR_104643)	promoter-TSS (NR_104643)	-417	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
33773	chr10	122911921	122912250	+	0	NA	intron (NM_001029888, intron 2 of 2)	intron (NM_001029888, intron 2 of 2)	1475	NM_001029888	118670		NM_001029888	ENSG00000203795	FAM24A	-	family with sequence similarity 24 member A	protein-coding
179477	chr4	184506571	184507000	+	0	NA	non-coding (NR_147158, exon 3 of 3)	non-coding (NR_147158, exon 3 of 3)	30798	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
118947	chr19	38833051	38833380	+	0	NA	Intergenic	Intergenic	-1421	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
68522	chr14	88824171	88825280	+	0	NA	promoter-TSS (NM_001366535)	promoter-TSS (NM_001366535)	74	NM_001366535	123016		NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
129053	chr2	65066021	65066700	+	0	NA	intron (NM_015147, intron 1 of 6)	AluSx3|SINE|Alu	9944	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
7006	chr1	31901921	31902180	+	0	NA	Intergenic	Intergenic	35768	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
162402	chr3	48213101	48213300	+	0	NA	Intergenic	AluSp|SINE|Alu	-10295	NM_004345	820		NM_004345	ENSG00000164047	CAMP	CAP-18|CAP18|CRAMP|FALL-39|FALL39|HSD26|LL37	cathelicidin antimicrobial peptide	protein-coding
206704	chr7	36514171	36514330	+	0	NA	intron (NM_001637, intron 20 of 20)	L2b|LINE|L2	85870	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
230291	chr9	127943651	127944630	+	0	NA	intron (NM_203305, intron 7 of 7)	intron (NM_203305, intron 7 of 7)	-6286	NM_001378436	8818		NM_003863	ENSG00000136908	DPM2	CDG1U	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein-coding
67741	chr14	73612271	73613680	+	0	NA	exon (NM_001365788, exon 1 of 3)	exon (NM_001365788, exon 1 of 3)	458	NM_001365788	641372		NM_001037162	ENSG00000205669	ACOT6	C14orf42|c14_5530	acyl-CoA thioesterase 6	protein-coding
119333	chr19	39951171	39951330	+	0	NA	Intergenic	Intergenic	-16624	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
107793	chr18	51153571	51154430	+	0	NA	Intergenic	Intergenic	43681	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
39493	chr11	61020001	61020400	+	0	NA	non-coding (NR_045638, exon 12 of 12)	non-coding (NR_045638, exon 12 of 12)	48520	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
65135	chr14	45080501	45080700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3516	NM_017922	55015		NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
111322	chr19	3623751	3624250	+	0	NA	exon (NM_001080543, exon 2 of 10)	exon (NM_001080543, exon 2 of 10)	2790	NM_001080543	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
128125	chr2	48325021	48325280	+	0	NA	intron (NM_001375452, intron 1 of 5)	intron (NM_001375452, intron 1 of 5)	10468	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
125362	chr2	11113471	11113830	+	0	NA	intron (NR_040080, intron 6 of 8)	(TTCC)n|Simple_repeat|Simple_repeat	18526	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
83166	chr16	23466501	23466830	+	0	NA	3' UTR (NM_015044, exon 17 of 17)	3' UTR (NM_015044, exon 17 of 17)	-13476	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
222374	chr8	133645201	133645400	+	0	NA	Intergenic	Intergenic	38766	NR_134462	105375773		NR_134462	ENSG00000289906	LINC03024	-	long intergenic non-protein coding RNA 3024	ncRNA
79035	chr16	71771	71930	+	0	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	781	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
187303	chr5	141607171	141607530	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	11650	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
177679	chr4	121791701	121792100	+	0	NA	Intergenic	Intergenic	-9423	NM_005033	5393		NM_005033	ENSG00000123737	EXOSC9	PCH1D|PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
5236	chr1	25004401	25004780	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-18913	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
143985	chr20	32963371	32963530	+	0	NA	Intergenic	Intergenic	40983	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
105230	chr17	82374051	82374350	+	0	NA	intron (NM_018949, intron 2 of 2)	intron (NM_018949, intron 2 of 2)	2435	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
199756	chr6	125828301	125828700	+	0	NA	intron (NM_001199621, intron 2 of 14)	L2a|LINE|L2	-9642	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
198873	chr6	109448521	109448780	+	0	NA	intron (NM_022765, intron 12 of 24)	intron (NM_022765, intron 12 of 24)	7122	NM_022765	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
204406	chr7	3068601	3069100	+	0	NA	Intergenic	MIRb|SINE|MIR	-24983	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
155434	chr22	38457901	38459330	+	0	NA	Intergenic	Intergenic	-3416	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
161225	chr3	39186801	39187000	+	0	NA	exon (NM_001198621, exon 2 of 3)	exon (NM_001198621, exon 2 of 3)	5695	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
54695	chr12	93422151	93422450	+	0	NA	intron (NM_003348, intron 1 of 3)	intron (NM_003348, intron 1 of 3)	19647	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
66549	chr14	61911451	61911880	+	0	NA	intron (NM_001367657, intron 2 of 6)	intron (NM_001367657, intron 2 of 6)	-16030	NM_001367663	83851		NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r	synaptotagmin 16	protein-coding
9165	chr1	45583151	45584200	+	0	NA	promoter-TSS (NM_002482)	promoter-TSS (NM_002482)	-313	NM_001195193	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
107694	chr18	49488251	49488500	+	0	NA	TTS (NM_000985)	TTS (NM_000985)	949	NR_003701	100124516		NR_003701		SNORD58C	U58	small nucleolar RNA, C/D box 58C	snoRNA
97137	chr17	42551821	42552430	+	0	NA	promoter-TSS (NM_000413)	promoter-TSS (NM_000413)	-798	NR_144397	3292		NM_000413	ENSG00000108786	HSD17B1	17-beta-HSD|20-alpha-HSD|E2DH|EDH17B2|EDHB17|HSD17|SDR28C1	hydroxysteroid 17-beta dehydrogenase 1	protein-coding
7496	chr1	33298401	33299100	+	0	NA	intron (NM_152493, intron 8 of 8)	intron (NM_152493, intron 8 of 8)	22348	NM_001080438	127550		NM_001080438	ENSG00000184389	A3GALT2	A3GALT2P|IGB3S|IGBS3S	alpha 1,3-galactosyltransferase 2	protein-coding
15925	chr1	151760601	151761130	+	0	NA	exon (NM_001300733, exon 5 of 6)	exon (NM_001300733, exon 5 of 6)	-2104	NM_001134939	51686		NM_016178	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
206603	chr7	35806801	35807880	+	0	NA	intron (NM_001788, intron 1 of 12)	AluSp|SINE|Alu	6121	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
41300	chr11	65871471	65871780	+	0	NA	intron (NM_016938, intron 3 of 10)	intron (NM_016938, intron 3 of 10)	1175	NM_016938	30008		NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin extracellular matrix protein 2	protein-coding
67978	chr14	74905371	74906350	+	0	NA	non-coding (NR_163406, exon 12 of 12)	non-coding (NR_163406, exon 12 of 12)	16582	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
235313	chrX	42934121	42934680	+	0	NA	Intergenic	Intergenic	-156237	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
13444	chr1	114428121	114428530	+	0	NA	intron (NM_033020, intron 6 of 18)	intron (NM_033020, intron 6 of 18)	82878	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
120820	chr19	45486871	45487700	+	0	NA	intron (NM_005619, intron 9 of 10)	AluJr|SINE|Alu	5968	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
141104	chr2	238439351	238440130	+	0	NA	intron (NM_001040445, intron 3 of 4)	L1MC4|LINE|L1	12813	NM_001330196	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
54660	chr12	93376301	93376750	+	0	NA	intron (NR_040096, intron 1 of 4)	intron (NR_040096, intron 1 of 4)	1211	NR_040096	643339		NR_040096		LOC643339	-	uncharacterized LOC643339	ncRNA
2223	chr1	8852751	8853050	+	0	NA	Intergenic	L2a|LINE|L2	13690	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
53810	chr12	69252251	69252550	+	0	NA	intron (NM_001300947, intron 2 of 10)	intron (NM_001300947, intron 2 of 10)	12831	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
59298	chr13	24267051	24268330	+	0	NA	intron (NM_153023, intron 3 of 11)	intron (NM_153023, intron 3 of 11)	-2997	NM_001286794	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
239494	chrY	56754121	56754380	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-200005	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
218197	chr8	42005371	42005530	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-46300	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
70689	chr14	103103501	103104150	+	0	NA	intron (NM_001077594, intron 2 of 10)	CpG-7692	3681	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
206953	chr7	38252751	38253050	+	0	NA	Intergenic	MIRb|SINE|MIR	20747	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
105384	chr17	82713321	82713850	+	0	NA	TTS (NR_136400)	TTS (NR_136400)	2668	NR_136400	101929552		NR_136400	ENSG00000263063	LOC101929552	-	uncharacterized LOC101929552	ncRNA
231308	chr9	130055901	130056300	+	0	NA	intron (NM_001136557, intron 1 of 19)	Charlie24|DNA|hAT-Charlie	2194	NM_001136557	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
9356	chr1	47175221	47175750	+	0	NA	Intergenic	Intergenic	-3765	NR_047498	100874253		NR_047498	ENSG00000224805	LINC00853	PDZK1IP1-AS1|ncRNA-a4	long intergenic non-protein coding RNA 853	ncRNA
132622	chr2	108617871	108618030	+	0	NA	intron (NM_001193482, intron 1 of 9)	intron (NM_001193482, intron 1 of 9)	-3301	NM_001193484	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
105017	chr17	82040771	82041130	+	0	NA	Intergenic	HERVK11-int|LTR|ERVK	3032	NR_159948	113523640		NR_159947	ENSG00000264569	DCXR-DT	-	DCXR divergent transcript	ncRNA
235019	chrX	40008571	40009250	+	0	NA	Intergenic	CpG	89048	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
15717	chr1	151022371	151022730	+	0	NA	intron (NM_001303243, intron 3 of 5)	AluY|SINE|Alu	-14036	NM_138278	149428		NM_138278	ENSG00000163141	BNIPL	BNIP-S|BNIP-Salpha|BNIP-Sbeta|BNIPL-1|BNIPL-2|BNIPL1|BNIPL2|BNIPS|PP753	BCL2 interacting protein like	protein-coding
49909	chr12	39612601	39613400	+	0	NA	intron (NM_005164, intron 2 of 9)	intron (NM_005164, intron 2 of 9)	6803	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
75019	chr15	64047601	64047800	+	0	NA	Intergenic	Intergenic	-1215	NM_001384998	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
71011	chr14	104755001	104755200	+	0	NA	intron (NM_021709, intron 1 of 2)	intron (NM_021709, intron 1 of 2)	1953	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
218222	chr8	42034751	42034850	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-16950	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
81236	chr16	4593601	4594000	+	0	NA	intron (NM_001145011, intron 12 of 15)	MIRb|SINE|MIR	21088	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
99691	chr17	50782151	50782450	+	0	NA	Intergenic	AluY|SINE|Alu	13650	NR_107026	102466918		NR_107026	ENSG00000278672	MIR8059	hsa-mir-8059	microRNA 8059	ncRNA
219932	chr8	86510651	86510950	+	0	NA	intron (NM_001317807, intron 1 of 9)	intron (NM_001317807, intron 1 of 9)	-2020	NM_001286707	51115		NM_016033	ENSG00000176623	RMDN1	CGI-90|FAM82B|RMD-1|RMD1	regulator of microtubule dynamics 1	protein-coding
27171	chr10	28535671	28536230	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	2832	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
98438	chr17	46851151	46852430	+	0	NA	intron (NM_001320458, intron 1 of 4).2	CpG	207	NM_003396	7484		NM_003396	ENSG00000158955	WNT9B	WNT14B|WNT15	Wnt family member 9B	protein-coding
225963	chr9	41116121	41116600	+	0	NA	intron (NR_147036, intron 2 of 6)	SATR1|Satellite|Satellite	-7430	NR_147037	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
113740	chr19	10489451	10489550	+	0	NA	intron (NM_012289, intron 4 of 5)	intron (NM_012289, intron 4 of 5)	13271	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
124579	chr2	676051	678050	+	0	NA	promoter-TSS (NM_001352681)	promoter-TSS (NM_001352681)	-346	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
32815	chr10	109922751	109924780	+	0	NA	promoter-TSS (NM_001324131)	promoter-TSS (NM_001324131)	-212	NM_001167604	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
182107	chr5	56064271	56064430	+	0	NA	Intergenic	AluSx|SINE|Alu	69183	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
211923	chr7	112455951	112456050	+	0	NA	intron (NR_120333, intron 2 of 11)	intron (NR_120333, intron 2 of 11)	3942	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
27878	chr10	41865171	41865330	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	502795	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
231971	chr9	133163301	133164150	+	0	NA	intron (NM_021996, intron 1 of 6)	CpG	189	NM_001288572	26301		NM_021996	ENSG00000148288	GBGT1	A3GALNT|FS|UNQ2513	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)	protein-coding
1621	chr1	3719771	3720530	+	0	NA	intron (NM_001204185, intron 4 of 12)	AluSx1|SINE|Alu	22104	NM_001204192	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
190892	chr6	2764491	2766510	+	0	NA	5' UTR (NM_130395, exon 1 of 7)	5' UTR (NM_130395, exon 1 of 7)	107	NM_130395	56897		NM_020135	ENSG00000124535	WRNIP1	CFAP93|FAP93|WHIP|bA420G6.2	WRN helicase interacting protein 1	protein-coding
69119	chr14	92525551	92526100	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	12044	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
141472	chr2	241073801	241074280	+	0	NA	non-coding (NR_138463, exon 7 of 7)	non-coding (NR_138463, exon 7 of 7)	28247	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
50886	chr12	49246551	49246650	+	0	NA	intron (NM_001303114, intron 1 of 3)	AluY|SINE|Alu	-18482	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
135283	chr2	159921601	159922030	+	0	NA	Intergenic	Intergenic	-17059	NM_001198760	100526664		NM_001198759	ENSG00000248672	LY75-CD302	CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6	LY75-CD302 readthrough	protein-coding
119039	chr19	38961901	38962580	+	0	NA	intron (NR_104026, intron 1 of 5)	LTR41|LTR|ERVL	-9553	NM_148169	115290		NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
188666	chr5	157255521	157256050	+	0	NA	TTS (NM_005546)	TTS (NM_005546)	-10338	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
138208	chr2	202690351	202690900	+	0	NA	intron (NM_173511, intron 1 of 7)	L2c|LINE|L2	55656	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
36125	chr11	3103121	3103580	+	0	NA	intron (NM_145638, intron 9 of 20)	intron (NM_145638, intron 9 of 20)	-45927	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
221721	chr8	127386251	127386350	+	0	NA	intron (NR_117099, intron 3 of 3)	MLT1O|LTR|ERVL-MaLR	-14099	NR_109834	101805488		NR_109834	ENSG00000280997	CCAT2	LINC00873|NCCP1	colon cancer associated transcript 2	ncRNA
135912	chr2	171436001	171436400	+	0	NA	intron (NR_028482, intron 2 of 12)	L1MB8|LINE|L1	-1397	NM_024770	79828		NM_024770	ENSG00000123600	METTL8	TIP	methyltransferase 8, tRNA N3-cytidine	protein-coding
129359	chr2	68773901	68775730	+	0	NA	promoter-TSS (NM_001166276)	promoter-TSS (NM_001166276)	-95	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
215761	chr8	2030571	2030830	+	0	NA	Intergenic	Intergenic	-14346	NM_003970	9172		NM_003970	ENSG00000036448	MYOM2	TTNAP	myomesin 2	protein-coding
3339	chr1	15433451	15433950	+	0	NA	Intergenic	Intergenic	-4743	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
197529	chr6	77464071	77464230	+	0	NA	promoter-TSS (NM_000863)	promoter-TSS (NM_000863)	-659	NM_000863	3351		NM_000863	ENSG00000135312	HTR1B	5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine receptor 1B	protein-coding
212608	chr7	129168921	129170050	+	0	NA	3' UTR (NM_178562, exon 8 of 8)	3' UTR (NM_178562, exon 8 of 8)	-19148	NM_005631	6608		NM_005631	ENSG00000128602	SMO	CRJS|FZD11|Gx|PHLS|SMOH	smoothened, frizzled class receptor	protein-coding
215490	chr7	158378021	158378280	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	154663	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
205214	chr7	7923871	7924480	+	0	NA	Intergenic	L2c|LINE|L2	44577	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
187009	chr5	139753201	139753700	+	0	NA	Intergenic	Intergenic	-7227	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
141565	chr2	241540801	241542000	+	0	NA	Intergenic	CpG	-17345	NM_032515	666		NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2 family apoptosis regulator BOK	protein-coding
162174	chr3	46991771	46991930	+	0	NA	exon (NM_015175, exon 9 of 54)	exon (NM_015175, exon 9 of 54)	3860	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
28593	chr10	53111601	53111800	+	0	NA	Intergenic	L1P2|LINE|L1	-338916	NM_001378373	4153		NM_000242	ENSG00000165471	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose binding lectin 2	protein-coding
82652	chr16	19380421	19380680	+	0	NA	Intergenic	Tigger19a|DNA|TcMar-Tigger	-29989	NM_001308161	79838		NM_024780	ENSG00000103534	TMC5	-	transmembrane channel like 5	protein-coding
21285	chr1	204447501	204447700	+	0	NA	intron (NM_001377335, intron 16 of 35)	intron (NM_001377335, intron 16 of 35)	-35783	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
212958	chr7	130953301	130953680	+	0	NA	intron (NR_109853, intron 4 of 5)	intron (NR_109853, intron 4 of 5)	40026	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
106352	chr18	13176721	13177180	+	0	NA	Intergenic	Intergenic	-40732	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
84789	chr16	31031071	31031830	+	0	NA	Intergenic	Intergenic	-1645	NM_001272096	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
104122	chr17	80339801	80340100	+	0	NA	exon (NM_001256071, exon 26 of 68)	exon (NM_001256071, exon 26 of 68)	-75217	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
47013	chr12	302651	303350	+	0	NA	intron (NM_001042603, intron 24 of 27)	L1PA7|LINE|L1	-40127	NM_001190997	6540		NM_016615	ENSG00000010379	SLC6A13	GAT-2|GAT2|GAT3	solute carrier family 6 member 13	protein-coding
71640	chr14	106768101	106768850	+	0	NA	Intergenic	Intergenic	82524	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
192729	chr6	26368471	26368630	+	0	NA	intron (NM_007047, intron 3 of 10)	intron (NM_007047, intron 3 of 10)	372	NM_001197246	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
9886	chr1	54354271	54354430	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	52044	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
152303	chr22	20326101	20326380	+	0	NA	Intergenic	L1M3a|LINE|L1	-6180	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
150005	chr21	37045051	37045430	+	0	NA	Intergenic	Intergenic	27563	NM_153681	51227		NM_016430	ENSG00000185808	PIGP	DCRC|DCRC-S|DEE55|DSCR5|DSRC|EIEE55|PIG-P	phosphatidylinositol glycan anchor biosynthesis class P	protein-coding
17940	chr1	160337901	160338100	+	0	NA	intron (NM_001098398, intron 3 of 32)	L1MB8|LINE|L1	5250	NM_001098398	1314		NM_004371	ENSG00000122218	COPA	AILJK|HEP-COP|alpha-COP	COPI coat complex subunit alpha	protein-coding
237218	chrX	109600351	109600650	+	0	NA	Intergenic	Intergenic	24672	NM_012282	23630		NM_012282	ENSG00000176076	KCNE5	KCNE1L	potassium voltage-gated channel subfamily E regulatory subunit 5	protein-coding
38680	chr11	46553521	46553980	+	0	NA	intron (NM_001367471, intron 1 of 18)	AluSg|SINE|Alu	33694	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
93926	chr17	21296471	21298080	+	0	NA	intron (NM_001316332, intron 2 of 12)	intron (NM_001316332, intron 2 of 12)	9239	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
57055	chr12	120887271	120887430	+	0	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	17008	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
5194	chr1	24956101	24956400	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	8760	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
136065	chr2	172931821	172932130	+	0	NA	intron (NM_001282901, intron 1 of 24)	intron (NM_001282901, intron 1 of 24)	3823	NM_001282901	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
195987	chr6	41978351	41978800	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-36727	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
109285	chr19	549371	549830	+	0	NA	intron (NM_001258351, intron 4 of 4)	intron (NM_001258351, intron 4 of 4)	5547	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
42210	chr11	68027901	68028300	+	0	NA	3' UTR (NM_001290058, exon 9 of 9)	3' UTR (NM_001290058, exon 9 of 9)	-2581	NM_002496	4728		NM_002496	ENSG00000110717	NDUFS8	CI-23k|CI23KD|MC1DN2|TYKY	NADH:ubiquinone oxidoreductase core subunit S8	protein-coding
133141	chr2	112671551	112672050	+	0	NA	Intergenic	Intergenic	25861	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
214437	chr7	149883301	149883700	+	0	NA	non-coding (NR_147020, exon 4 of 4)	non-coding (NR_147020, exon 4 of 4)	9531	NM_001367794	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
162620	chr3	48712871	48713030	+	0	NA	intron (NM_016291, intron 1 of 5)	AluSx1|SINE|Alu	4271	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
90608	chr17	1631401	1631600	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2666	NM_152346	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
141	chr1	519301	519830	+	0	NA	Intergenic	Intergenic	-24120	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
177990	chr4	139229351	139229700	+	0	NA	Intergenic	Intergenic	50700	NM_032623	84709		NM_032623	ENSG00000137463	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria localized glutamic acid rich protein	protein-coding
116598	chr19	18266751	18267050	+	0	NA	exon (NM_025249, exon 3 of 4)	exon (NM_025249, exon 3 of 4)	7552	NM_001145304	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
233991	chrX	2875871	2876030	+	0	NA	intron (NM_001184702, intron 9 of 10)	intron (NM_001184702, intron 9 of 10)	-28954	NR_144459	100506356		NR_144459	ENSG00000229851	ARSD-AS1	-	ARSD antisense RNA 1	ncRNA
156518	chr22	41383721	41384280	+	0	NA	intron (NM_003216, intron 1 of 3)	intron (NM_003216, intron 1 of 3)	2058	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
76552	chr15	75208451	75208980	+	0	NA	exon (NM_015492, exon 2 of 3)	exon (NM_015492, exon 2 of 3)	6833	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
135666	chr2	168470421	168470880	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	14378	NM_001256126	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
177646	chr4	121222801	121223530	+	0	NA	intron (NM_001244764, intron 1 of 12)	intron (NM_001244764, intron 1 of 12)	4318	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
185208	chr5	119450901	119451100	+	0	NA	Intergenic	MER11A|LTR|ERVK	-1497	NM_001199291	3295		NM_000414	ENSG00000133835	HSD17B4	DBP|MFE-2|MFP-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid 17-beta dehydrogenase 4	protein-coding
143492	chr20	31157421	31158480	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-99714	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
235160	chrX	41121101	41122050	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	36130	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
214896	chr7	151432901	151433900	+	0	NA	TTS (NR_037468)	TTS (NR_037468)	239	NR_037468	100500835		NR_037468	ENSG00000265810	MIR3907	-	microRNA 3907	ncRNA
120571	chr19	44993921	44994180	+	0	NA	TTS (NM_001294)	TTS (NM_001294)	-7414	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
153762	chr22	29470071	29470680	+	0	NA	Intergenic	CpG	-9843	NM_021076	4744		NM_021076	ENSG00000100285	NEFH	CMT2CC|NFH	neurofilament heavy chain	protein-coding
69317	chr14	93189701	93190000	+	0	NA	Intergenic	AluSz|SINE|Alu	4533	NM_001098621	26175		NM_015676	ENSG00000153485	LYSET	C14orf109|DMAN|GCAF|TMEM251	lysosomal enzyme trafficking factor	protein-coding
188283	chr5	151128601	151129030	+	0	NA	intron (NM_001193544, intron 11 of 24)	MER103C|DNA|hAT-Charlie	12869	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
39075	chr11	47987021	47987480	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	6691	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
188912	chr5	160271471	160271630	+	0	NA	intron (NR_131769, intron 3 of 7)	intron (NR_131769, intron 3 of 7)	41014	NM_001308173	79616		NM_024565	ENSG00000135083	CCNJL	-	cyclin J like	protein-coding
184052	chr5	91418221	91418480	+	0	NA	intron (NR_027435, intron 1 of 2)	intron (NR_027435, intron 1 of 2)	-35033	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
181213	chr5	39169751	39170580	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	49398	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
238838	chrX	154464051	154464380	+	0	NA	exon (NM_017514, exon 8 of 33)	exon (NM_017514, exon 8 of 33)	5934	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
23893	chr1	234962701	234963730	+	0	NA	intron (NR_125945, intron 1 of 3)	intron (NR_125945, intron 1 of 3)	784	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
76044	chr15	72232001	72233280	+	0	NA	Intergenic	Intergenic	-1016	NM_001206798	5315		NM_002654	ENSG00000067225	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1|p58	pyruvate kinase M1/2	protein-coding
23922	chr1	235074701	235075850	+	0	NA	Intergenic	Intergenic	-5457	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
165910	chr3	106609621	106610000	+	0	NA	Intergenic	Intergenic	630828	NR_028303	100302640		NR_028303		LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
219505	chr8	73971151	73972950	+	0	NA	promoter-TSS (NM_001204862)	promoter-TSS (NM_001204862)	141	NM_001204859	6921		NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
181982	chr5	55177951	55178250	+	0	NA	Intergenic	AluY|SINE|Alu	-4923	NM_152623	166979		NM_152623	ENSG00000164287	CDC20B	G6VTS76519	cell division cycle 20B	protein-coding
8249	chr1	39768521	39768780	+	0	NA	TTS (NM_022120)	TTS (NM_022120)	2698	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
140285	chr2	232348951	232349580	+	0	NA	Intergenic	Intergenic	-29486	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
82917	chr16	21798671	21798900	+	0	NA	intron (NR_003370, intron 10 of 11).2	MER20|DNA|hAT-Charlie	20389	NR_003370	730092		NR_003370		RRN3P1	-	RRN3 pseudogene 1	pseudo
73733	chr15	45187371	45189180	+	0	NA	promoter-TSS (NM_001301169)	promoter-TSS (NM_001301169)	-309	NM_001301168	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
26639	chr10	22503801	22504000	+	0	NA	Intergenic	Intergenic	-65971	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
214868	chr7	151384971	151385800	+	0	NA	intron (NM_001284260, intron 3 of 5)	intron (NM_001284260, intron 3 of 5)	-23776	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
204094	chr7	2112801	2113200	+	0	NA	intron (NM_001304524, intron 9 of 16)	L1MC4a|LINE|L1	-23948	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
21496	chr1	205734601	205735200	+	0	NA	intron (NM_022731, intron 1 of 6)	AluSx1|SINE|Alu	15282	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
63993	chr14	22484171	22484630	+	0	NA	Intergenic	Intergenic	-1441	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
135698	chr2	168912871	168913250	+	0	NA	Intergenic	Intergenic	11769	NM_001081686	57818		NM_021176	ENSG00000152254	G6PC2	IGRP	glucose-6-phosphatase catalytic subunit 2	protein-coding
116566	chr19	18235751	18236050	+	0	NA	intron (NM_000923, intron 1 of 15)	L2b|LINE|L2	-1521	NM_001330172	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
63822	chr14	21454151	21454330	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	1883	NM_001170629	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
3302	chr1	15349451	15349750	+	0	NA	intron (NM_052929, intron 18 of 30)	intron (NM_052929, intron 18 of 30)	-5717	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
205800	chr7	24227251	24227950	+	0	NA	Intergenic	Intergenic	-56590	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
196259	chr6	42924171	42924730	+	0	NA	intron (NM_138296, intron 3 of 3)	intron (NM_138296, intron 3 of 3)	-3552	NR_134881	10695		NM_006586	ENSG00000137161	CNPY3	CAG4A|DEE60|EIEE60|ERDA5|PRAT4A|TNRC5	canopy FGF signaling regulator 3	protein-coding
157107	chr22	42638501	42638700	+	0	NA	intron (NM_000398, intron 1 of 8)	AluSx|SINE|Alu	2001	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
103645	chr17	78762601	78763180	+	0	NA	intron (NM_017456, intron 1 of 12)	MLT1D|LTR|ERVL-MaLR	19318	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
174972	chr4	49632551	49633480	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	646373	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
216189	chr8	11834071	11834450	+	0	NA	intron (NM_004462, intron 7 of 7)	intron (NM_004462, intron 7 of 7)	25116	NM_001287751	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
183562	chr5	80140271	80140430	+	0	NA	3' UTR (NM_001174072, exon 12 of 12)	3' UTR (NM_001174072, exon 12 of 12)	-56685	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
12619	chr1	109102321	109103030	+	0	NA	Intergenic	AluSq|SINE|Alu	2482	NR_003023	677766		NR_003023	ENSG00000278249	SCARNA2	HBII-382|mgU2-25/61	small Cajal body-specific RNA 2	ncRNA
10904	chr1	83270801	83271030	+	0	NA	Intergenic	Intergenic	-175139	NR_146478	101927542		NR_146478		LINC01712	-	long intergenic non-protein coding RNA 1712	ncRNA
56796	chr12	120204001	120204680	+	0	NA	intron (NR_038924, intron 1 of 3)	intron (NR_038924, intron 1 of 3)	3049	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
209315	chr7	76130671	76130830	+	0	NA	Intergenic	Intergenic	-21988	NR_135079	101927126		NR_135079		GTF2IP7	-	general transcription factor IIi pseudogene 7	pseudo
186718	chr5	139196051	139196650	+	0	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	2018	NM_001037633	64374		NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
53458	chr12	65742271	65742430	+	0	NA	Intergenic	CpG	-82110	NM_001300918	8091		NM_003483	ENSG00000149948	HMGA2	BABL|HMGI-C|HMGIC|LIPO|SRS5|STQTL9	high mobility group AT-hook 2	protein-coding
18217	chr1	161015251	161015930	+	0	NA	intron (NM_001382733, intron 1 of 9)	AluSz|SINE|Alu	5562	NM_001348091	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
82725	chr16	21116351	21116450	+	0	NA	intron (NM_017539, intron 12 of 61)	THE1C|LTR|ERVL-MaLR	34446	NM_001347886	55567		NM_017539	ENSG00000158486	DNAH3	DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3	dynein axonemal heavy chain 3	protein-coding
142289	chr20	3238071	3239850	+	0	NA	promoter-TSS (NM_001174090)	promoter-TSS (NM_001174090)	230	NM_001174089	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
132400	chr2	105792171	105792330	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	47187	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
137388	chr2	196213201	196214000	+	0	NA	intron (NM_001348768, intron 28 of 28)	intron (NM_001348768, intron 28 of 28)	-42022	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
97339	chr17	43277101	43277700	+	0	NA	TTS (NR_002716).7	TTS (NR_002716).7	768	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
65514	chr14	51900421	51900680	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	18021	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
144514	chr20	35697251	35697930	+	0	NA	intron (NR_037570, intron 3 of 13)	intron (NR_037570, intron 3 of 13)	1762	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
190725	chr6	313051	313430	+	0	NA	intron (NR_104473, intron 3 of 5)	intron (NR_104473, intron 3 of 5)	21183	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
50201	chr12	46188971	46189130	+	0	NA	exon (NM_001077484, exon 17 of 17)	exon (NM_001077484, exon 17 of 17)	77466	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
102593	chr17	75899871	75900250	+	0	NA	intron (NM_032478, intron 6 of 8)	intron (NM_032478, intron 6 of 8)	-3109	NM_173547	201292		NM_173547	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
239006	chrX	156028501	156029500	+	0	NA	promoter-TSS (NR_110561)	promoter-TSS (NR_110561)	-817	NR_110561	727856		NR_110561		DDX11L16	-	DEAD/H-box helicase 11 like 16 (pseudogene)	pseudo
91492	chr17	4904651	4904900	+	0	NA	Intergenic	MIRc|SINE|MIR	-1677	NM_000080	1145		NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1A1|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|FIM1|FIMG|FIMG1|MGI|SCCMS	cholinergic receptor nicotinic epsilon subunit	protein-coding
22694	chr1	223907801	223908330	+	0	NA	Intergenic	LTR33|LTR|ERVL	-62093	NM_005426	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
152009	chr22	19390421	19390700	+	0	NA	intron (NM_003325, intron 9 of 24)	AluSx1|SINE|Alu	41173	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
37798	chr11	32588221	32588930	+	0	NA	intron (NM_006360, intron 2 of 10)	intron (NM_006360, intron 2 of 10)	4744	NM_006360	10480		NM_006360	ENSG00000149100	EIF3M	B5|GA17|PCID1|TANGO7|hfl-B5	eukaryotic translation initiation factor 3 subunit M	protein-coding
226848	chr9	78000301	78000500	+	0	NA	intron (NM_002072, intron 1 of 6)	Mam_R4|LINE|Dong-R4	31411	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
565	chr1	1258301	1258650	+	0	NA	intron (NM_194457, intron 2 of 5)	intron (NM_194457, intron 2 of 5)	-11753	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
108469	chr18	70623971	70624130	+	0	NA	Intergenic	MIR|SINE|MIR	26904	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
219164	chr8	66490421	66491350	+	0	NA	Intergenic	MER65A|LTR|ERV1	-2681	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
33253	chr10	114495201	114495750	+	0	NA	intron (NM_001322883, intron 6 of 20)	(TGA)n|Simple_repeat|Simple_repeat	31438	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
238467	chrX	153139251	153139350	+	0	NA	Intergenic	Intergenic	-39984	NM_004988	4100		NM_004988	ENSG00000198681	MAGEA1	CT1.1|MAGE1	MAGE family member A1	protein-coding
124546	chr2	392721	393180	+	0	NA	Intergenic	L2b|LINE|L2	76666	NR_146953	105373350		NR_146953		LINC01865	-	long intergenic non-protein coding RNA 1865	ncRNA
104297	chr17	80874921	80875180	+	0	NA	intron (NM_001163034, intron 13 of 29)	intron (NM_001163034, intron 13 of 29)	-69418	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
19061	chr1	169893171	169894800	+	0	NA	promoter-TSS (NM_020423)	promoter-TSS (NM_020423)	-26	NM_181093	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
234299	chrX	13695871	13696230	+	0	NA	intron (NM_001195328, intron 1 of 1)	intron (NM_001195328, intron 1 of 1)	6922	NM_004251	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
88043	chr16	81442471	81443570	+	0	NA	Intergenic	Intergenic	-2150	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
49136	chr12	14935671	14935830	+	0	NA	intron (NM_152321, intron 2 of 6)	AluSz6|SINE|Alu	2787	NM_152321	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
44827	chr11	114044221	114044480	+	0	NA	Intergenic	L2a|LINE|L2	-15361	NM_001354750	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
58510	chr12	132178221	132178480	+	0	NA	Intergenic	AluJr|SINE|Alu	11345	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
74526	chr15	60480601	60480800	+	0	NA	intron (NR_120341, intron 1 of 4)	AluSz|SINE|Alu	1522	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
122326	chr19	49142821	49143430	+	0	NA	intron (NR_103842, intron 20 of 28)	intron (NR_103842, intron 20 of 28)	12271	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
14004	chr1	120702001	120702450	+	0	NA	Intergenic	L2c|LINE|L2	-21714	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
183475	chr5	79255351	79256430	+	0	NA	intron (NM_152405, intron 1 of 10)	L1M1|LINE|L1	19759	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
57238	chr12	121554021	121554300	+	0	NA	intron (NM_001005366, intron 4 of 22)	AluJo|SINE|Alu	26086	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
153598	chr22	27669321	27669630	+	0	NA	Intergenic	Intergenic	132281	NM_002430	4330		NM_002430	ENSG00000169184	MN1	CEBALID|MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	MN1 proto-oncogene, transcriptional regulator	protein-coding
113518	chr19	10111021	10111700	+	0	NA	promoter-TSS (NM_002566)	promoter-TSS (NM_002566)	-333	NM_002566	5032		NM_002566	ENSG00000244165	P2RY11	P2Y11	purinergic receptor P2Y11	protein-coding
236911	chrX	87517571	87517830	+	0	NA	promoter-TSS (NM_019117)	promoter-TSS (NM_019117)	-102	NM_057162	56062		NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch like family member 4	protein-coding
197738	chr6	87158451	87158830	+	0	NA	intron (NM_015021, intron 1 of 7)	AluSx3|SINE|Alu	3075	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
95293	chr17	35529501	35530250	+	0	NA	intron (NM_001363830, intron 1 of 4)	L1PB1|LINE|L1	7986	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
116762	chr19	18490651	18491350	+	0	NA	intron (NM_006532, intron 1 of 11)	MLT2D|LTR|ERVL	31070	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
16964	chr1	155942121	155942980	+	0	NA	exon (NM_181885, exon 1 of 1)	exon (NM_181885, exon 1 of 1)	912	NM_181885	339403		NM_181885	ENSG00000173080	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin family peptide/INSL5 receptor 4	protein-coding
146412	chr20	49508401	49508900	+	0	NA	intron (NM_000961, intron 9 of 9)	MER91B|DNA|hAT-Tip100	-25982	NM_004975	3745		NM_004975	ENSG00000158445	KCNB1	DEE26|DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
103971	chr17	79989901	79990300	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	-39247	NM_001271845	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
67824	chr14	73848021	73848280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3681	NM_001146154	145482		NM_152444	ENSG00000140043	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
134938	chr2	151437571	151438180	+	0	NA	intron (NM_018151, intron 13 of 35)	MIR|SINE|MIR	27973	NM_001177665	55183		NM_018151	ENSG00000080345	RIF1	-	replication timing regulatory factor 1	protein-coding
151986	chr22	19168751	19168850	+	0	NA	Intergenic	Intergenic	-2906	NR_103767	100652736		NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
13483	chr1	114713921	114714380	+	0	NA	intron (NM_002524, intron 2 of 6)	intron (NM_002524, intron 2 of 6)	2621	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
81125	chr16	4387321	4388480	+	0	NA	intron (NM_001351729, intron 9 of 27)	intron (NM_001351729, intron 9 of 27)	16052	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
183766	chr5	81738871	81739400	+	0	NA	intron (NM_001256733, intron 1 of 15)	AluSz|SINE|Alu	12118	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
6828	chr1	31011821	31012280	+	0	NA	intron (NM_014676, intron 3 of 21)	MamRep605|LTR?|LTR?	-43813	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
20033	chr1	185315721	185316700	+	0	NA	intron (NM_006469, intron 1 of 14)	CpG	1033	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
92345	chr17	8171051	8171350	+	0	NA	Intergenic	AluSg|SINE|Alu	2388	NR_033294	727676		NR_033294	ENSG00000200463	SNORD118	LCC|U8	small nucleolar RNA, C/D box 118	snoRNA
166161	chr3	111605101	111605300	+	0	NA	intron (NR_134917, intron 7 of 14)	intron (NR_134917, intron 7 of 14)	-9854	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
99197	chr17	49508901	49509100	+	0	NA	intron (NM_002507, intron 3 of 5)	intron (NM_002507, intron 3 of 5)	-1817	NR_106751	102465141		NR_106751	ENSG00000277478	MIR6165	hsa-mir-6165	microRNA 6165	ncRNA
57989	chr12	124302871	124303030	+	0	NA	intron (NM_001365156, intron 1 of 2)	intron (NM_001365156, intron 1 of 2)	7857	NM_001365156	144347		NM_181709	ENSG00000178882	RFLNA	CFM2|FAM101A	refilin A	protein-coding
205351	chr7	12731271	12732000	+	0	NA	Intergenic	Intergenic	44002	NM_005738	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
27677	chr10	33109301	33110900	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	6707	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
914	chr1	1697551	1697850	+	0	NA	Intergenic	Intergenic	-2239	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
125530	chr2	12948371	12949330	+	0	NA	Intergenic	Intergenic	58163	NR_038434	100506474		NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
118996	chr19	38888871	38889550	+	0	NA	intron (NR_034146, intron 5 of 13)	intron (NR_034146, intron 5 of 13)	4945	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
158916	chr3	10012671	10012900	+	0	NA	Intergenic	Intergenic	-1537	NM_018447	55831		NM_018447	ENSG00000125037	EMC3	POB|TMEM111	ER membrane protein complex subunit 3	protein-coding
154056	chr22	30598371	30598680	+	0	NA	intron (NM_001282327, intron 2 of 16)	AluSz6|SINE|Alu	-6615	NM_014303	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
56592	chr12	118015501	118015700	+	0	NA	Intergenic	Intergenic	-1061	NM_001130113	5985		NM_007370	ENSG00000111445	RFC5	RFC36	replication factor C subunit 5	protein-coding
26331	chr10	15149151	15149550	+	0	NA	intron (NM_004808, intron 1 of 11)	(CCA)n|Simple_repeat|Simple_repeat	5997	NR_036506	100192204		NR_036506	ENSG00000206448	PPIAP30	-	peptidylprolyl isomerase A pseudogene 30	pseudo
210376	chr7	99624201	99625750	+	0	NA	intron (NM_001350984, intron 7 of 7)	intron (NM_001350984, intron 7 of 7)	8029	NM_001350984	221785		NM_145115	ENSG00000197037	ZSCAN25	ZNF498	zinc finger and SCAN domain containing 25	protein-coding
163045	chr3	49871571	49872100	+	0	NA	Intergenic	Intergenic	-1929	NM_001320147	79012		NM_024046	ENSG00000164076	CAMKV	1G5|VACAMKL	CaM kinase like vesicle associated	protein-coding
75340	chr15	65395701	65396200	+	0	NA	exon (NM_020962, exon 7 of 20)	exon (NM_020962, exon 7 of 20)	-17948	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
218146	chr8	41797171	41798130	+	0	NA	promoter-TSS (NM_020476)	promoter-TSS (NM_020476)	-28	NM_020477	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
72263	chr15	30623801	30624750	+	0	NA	intron (NR_157594, intron 1 of 4)	AluSg7|SINE|Alu	1503	NR_157596	102725021		NR_157593		ARHGAP11B-DT	-	ARHGAP11B divergent transcript	ncRNA
62067	chr13	94271251	94271390	+	0	NA	intron (NM_005708, intron 4 of 8)	intron (NM_005708, intron 4 of 8)	-83329	NR_046535	100873972		NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
118640	chr19	37294901	37295100	+	0	NA	Intergenic	SST1|Satellite|centr	-17837	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
167406	chr3	128996101	128996300	+	0	NA	intron (NM_001348521, intron 1 of 15)	MLT1G1|LTR|ERVL-MaLR	-2124	NM_020741	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
4375	chr1	20727351	20727850	+	0	NA	exon (NM_001103161, exon 3 of 10)	exon (NM_001103161, exon 3 of 10)	5103	NM_001103160	400745		NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
19303	chr1	172986671	172986850	+	0	NA	Intergenic	L1PA2|LINE|L1	64181	NM_005092	8995		NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	TNF superfamily member 18	protein-coding
27368	chr10	30782601	30783080	+	0	NA	Intergenic	Intergenic	59621	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
232240	chr9	134388771	134388930	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	9439	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
124742	chr2	6880321	6880930	+	0	NA	intron (NM_080657, intron 1 of 5)	LTR19B|LTR|ERV1	2848	NM_080657	91543		NM_080657	ENSG00000134321	RSAD2	SAND|cig33|cig5|vig1	radical S-adenosyl methionine domain containing 2	protein-coding
77095	chr15	78921521	78921830	+	0	NA	TTS (NM_001319137)	TTS (NM_001319137)	23371	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
32540	chr10	103192101	103194030	+	0	NA	intron (NM_001351175, intron 1 of 19)	CpG	207	NM_001134373	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
56261	chr12	112007101	112007500	+	0	NA	intron (NM_138341, intron 1 of 9)	AluSz6|SINE|Alu	5865	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
80275	chr16	2235571	2236030	+	0	NA	promoter-TSS (NM_001301680)	promoter-TSS (NM_001301680)	-644	NM_001374	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
120419	chr19	43934251	43934350	+	0	NA	intron (NM_003425, intron 2 of 9)	intron (NM_003425, intron 2 of 9)	982	NM_003425	7596		NM_003425	ENSG00000124459	ZNF45	KOX5|ZNF13	zinc finger protein 45	protein-coding
24933	chr10	1153471	1153630	+	0	NA	Intergenic	Intergenic	-6218	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
25048	chr10	3772271	3773180	+	0	NA	Intergenic	Intergenic	12484	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
199635	chr6	121354751	121354950	+	0	NA	Intergenic	AluJb|SINE|Alu	-20121	NM_001367759	221322		NM_152730	ENSG00000146350	TBC1D32	BROMI|C6orf170|C6orf171	TBC1 domain family member 32	protein-coding
74722	chr15	63184021	63184700	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-5246	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
37433	chr11	17387701	17388130	+	0	NA	exon (NM_000525, exon 1 of 1)	exon (NM_000525, exon 1 of 1)	744	NM_000525	3767		NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|PNDM2|TNDM3	potassium inwardly rectifying channel subfamily J member 11	protein-coding
188859	chr5	159265651	159265950	+	0	NA	intron (NM_145049, intron 1 of 10)	THE1A|LTR|ERVL-MaLR	2510	NM_145049	134510		NM_145049	ENSG00000164332	UBLCP1	CPUB1	ubiquitin like domain containing CTD phosphatase 1	protein-coding
48459	chr12	9750301	9751140	+	0	NA	Intergenic	MIR|SINE|MIR	10181	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
36236	chr11	3702121	3702430	+	0	NA	intron (NR_157589, intron 23 of 31)	(CA)n|Simple_repeat|Simple_repeat	-30891	NM_001303034	57053		NM_020402	ENSG00000129749	CHRNA10	-	cholinergic receptor nicotinic alpha 10 subunit	protein-coding
155844	chr22	39449001	39449200	+	0	NA	Intergenic	Intergenic	-7912	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
198091	chr6	90280521	90281230	+	0	NA	intron (NM_021813, intron 1 of 8)	OldhAT1|DNA|hAT-Ac	15968	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
77060	chr15	78879021	78880400	+	0	NA	intron (NM_206839, intron 2 of 12)	FLAM_C|SINE|Alu	6721	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
232573	chr9	136371521	136371780	+	0	NA	intron (NM_052813, intron 2 of 12)	intron (NM_052813, intron 2 of 12)	2019	NM_052814	64170		NM_022352	ENSG00000187796	CARD9	CANDF2|IMD103|hCARD9	caspase recruitment domain family member 9	protein-coding
79941	chr16	1760151	1760250	+	0	NA	intron (NM_001318852, intron 11 of 31)	intron (NM_001318852, intron 11 of 31)	11509	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
64833	chr14	35120521	35120780	+	0	NA	intron (NM_017917, intron 1 of 12)	L2|LINE|L2	1892	NM_001305155	55012		NM_017917	ENSG00000092020	PPP2R3C	C14orf10|G4-1|G5pr|GDRM|MEGD|SPGF36	protein phosphatase 2 regulatory subunit B''gamma	protein-coding
122688	chr19	49889101	49889330	+	0	NA	TTS (NM_001168222)	TTS (NM_001168222)	1040	NR_039905	100616314		NR_039905	ENSG00000284394	MIR4750	mir-4750	microRNA 4750	ncRNA
142853	chr20	17615121	17616200	+	0	NA	intron (NM_004587, intron 22 of 24)	intron (NM_004587, intron 22 of 24)	45585	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
193874	chr6	31576531	31577650	+	0	NA	intron (NM_000594, intron 3 of 3).6	(CTCC)n|Simple_repeat|Simple_repeat	1525	NM_000594	7124		NM_000594	ENSG00000232810	TNF	DIF|TNF-alpha|TNFA|TNFSF2|TNLG1F	tumor necrosis factor	protein-coding
35164	chr11	767321	767580	+	0	NA	non-coding (NR_134867, exon 7 of 7)	non-coding (NR_134867, exon 7 of 7)	10037	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
175881	chr4	80060801	80061000	+	0	NA	intron (NM_001145794, intron 3 of 15)	MLT1G|LTR|ERVL-MaLR	12329	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
45479	chr11	118598801	118599000	+	0	NA	intron (NM_001142281, intron 8 of 8)	AluSx1|SINE|Alu	-7536	NM_015157	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
102020	chr17	74848971	74849530	+	0	NA	intron (NM_001278553, intron 7 of 11)	MIRb|SINE|MIR	10634	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
41471	chr11	66135771	66136730	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	65978	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
1340	chr1	2472401	2472800	+	0	NA	intron (NM_001303012, intron 1 of 21)	intron (NM_001303012, intron 1 of 21)	-3689	NM_014638	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
212521	chr7	128793901	128794430	+	0	NA	intron (NM_022742, intron 1 of 17)	intron (NM_022742, intron 1 of 17)	2197	NM_022742	64753		NM_022742	ENSG00000128596	CCDC136	NAG6	coiled-coil domain containing 136	protein-coding
53545	chr12	67441671	67442080	+	0	NA	intron (NR_146500, intron 1 of 1)	intron (NR_146500, intron 1 of 1)	684	NR_146500	102724433		NR_146500	ENSG00000256172	LINC02420	-	long intergenic non-protein coding RNA 2420	ncRNA
44446	chr11	104877121	104877750	+	0	NA	Intergenic	Intergenic	21235	NR_034065	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
99029	chr17	48857621	48858080	+	0	NA	intron (NM_001261391, intron 11 of 13)	AluY|SINE|Alu	26815	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
96668	chr17	40807201	40807400	+	0	NA	Intergenic	AluSx|SINE|Alu	-7341	NM_181535	162605		NM_181535	ENSG00000173908	KRT28	K25IRS4|KRT25D	keratin 28	protein-coding
196883	chr6	52221371	52221550	+	0	NA	Intergenic	Intergenic	23040	NM_052872	112744		NM_052872	ENSG00000112116	IL17F	CANDF6|IL-17F|IL17A|ML-1|ML1	interleukin 17F	protein-coding
78007	chr15	89745971	89746130	+	0	NA	Intergenic	Intergenic	5259	NM_018670	55897		NM_018670	ENSG00000166823	MESP1	bHLHc5	mesoderm posterior bHLH transcription factor 1	protein-coding
122415	chr19	49448521	49448780	+	0	NA	intron (NM_017916, intron 3 of 8)	intron (NM_017916, intron 3 of 8)	3164	NM_017916	55011		NM_017916	ENSG00000104872	PIH1D1	DNAAF14|MOT48|NOP17|Pih1	PIH1 domain containing 1	protein-coding
68203	chr14	76863671	76864430	+	0	NA	intron (NR_169573, intron 10 of 12)	LTR67B|LTR|ERVL	37642	NR_169572	145497		NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
16328	chr1	154225301	154225700	+	0	NA	intron (NM_001375623, intron 2 of 27)	AluJr|SINE|Alu	4196	NM_001375631	9898		NM_014847	ENSG00000143569	UBAP2L	NEDLBF|NICE-4|NICE4	ubiquitin associated protein 2 like	protein-coding
65226	chr14	49850921	49851300	+	0	NA	intron (NM_001301732, intron 3 of 31)	AluSx|SINE|Alu	1678	NM_004713	9147		NM_004713	ENSG00000165525	NEMF	IDDSAPN|NY-CO-1|RQC2|SDCCAG1	nuclear export mediator factor	protein-coding
104279	chr17	80831401	80831830	+	0	NA	intron (NM_020761, intron 9 of 33)	intron (NM_020761, intron 9 of 33)	-25983	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
173121	chr4	6574801	6576100	+	0	NA	intron (NM_015274, intron 1 of 18)	intron (NM_015274, intron 1 of 18)	261	NM_001292038	23324		NM_015274	ENSG00000013288	MAN2B2	EpMAN	mannosidase alpha class 2B member 2	protein-coding
234277	chrX	13487971	13488500	+	0	NA	Intergenic	Intergenic	-81366	NM_015507	25975		NM_015507	ENSG00000198759	EGFL6	MAEG|W80	EGF like domain multiple 6	protein-coding
214341	chr7	149459771	149461480	+	0	NA	intron (NM_015694, intron 1 of 5)	CpG	437	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
18709	chr1	167445701	167447050	+	0	NA	intron (NM_198053, intron 1 of 7)	MIRb|SINE|MIR	72154	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
180984	chr5	35795221	35795480	+	0	NA	intron (NM_024867, intron 32 of 36)	intron (NM_024867, intron 32 of 36)	-61541	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
169860	chr3	177198521	177200180	+	0	NA	Intergenic	Intergenic	-1868	NM_001374330	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
182150	chr5	56479301	56479500	+	0	NA	intron (NR_104664, intron 1 of 4)	MLT1A|LTR|ERVL-MaLR	2369	NR_104664	102467147		NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
79778	chr16	1375851	1375950	+	0	NA	intron (NM_001372107, intron 10 of 14)	intron (NM_001372107, intron 10 of 14)	3752	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
103308	chr17	77884071	77884680	+	0	NA	promoter-TSS (NR_028337)	promoter-TSS (NR_028337)	-288	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
205678	chr7	23055601	23055900	+	0	NA	Intergenic	Intergenic	-41620	NM_001363467	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
39820	chr11	62029771	62030600	+	0	NA	Intergenic	MER21C|LTR|ERVL	-62551	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
134074	chr2	131516251	131516350	+	0	NA	intron (NR_026922, intron 11 of 17)	intron (NR_026922, intron 11 of 17)	-11375	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
153566	chr22	26658201	26658380	+	0	NA	intron (NR_033319, intron 1 of 3)	MIRb|SINE|MIR	808	NR_033319	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
237120	chrX	106415371	106415600	+	0	NA	Intergenic	Intergenic	-196445	NM_001184782	55086		NM_018015	ENSG00000147231	RADX	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein-coding
5287	chr1	25106051	25106550	+	0	NA	Intergenic	Intergenic	82797	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
137626	chr2	197327721	197328030	+	0	NA	Intergenic	Intergenic	-17095	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
76756	chr15	76902921	76903750	+	0	NA	intron (NR_148227, intron 1 of 32)	intron (NR_148227, intron 1 of 32)	2005	NM_001353009	49855		NM_020843	ENSG00000140386	SCAPER	IDDRP|MSTP063|ZNF291|Zfp291	S-phase cyclin A associated protein in the ER	protein-coding
141828	chr20	383321	383830	+	0	NA	intron (NM_001301201, intron 2 of 4)	AluJo|SINE|Alu	2232	NM_001301190	57761		NM_021158	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
73498	chr15	43757121	43757780	+	0	NA	intron (NM_005313, intron 3 of 12)	AluY|SINE|Alu	11012	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
174294	chr4	38455071	38455230	+	0	NA	intron (NR_110951, intron 2 of 7)	intron (NR_110951, intron 2 of 7)	-54617	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
1938	chr1	6494171	6494600	+	0	NA	intron (NM_198681, intron 2 of 21)	AluSq2|SINE|Alu	-2718	NM_020631	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
14192	chr1	122682051	122682150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1162988	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
12311	chr1	100928921	100929230	+	0	NA	intron (NM_133496, intron 8 of 10)	intron (NM_133496, intron 8 of 10)	32985	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
209426	chr7	76361001	76361730	+	0	NA	Intergenic	Intergenic	-2374	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
34424	chr10	132408471	132409280	+	0	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	11675	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
96377	chr17	40106551	40106650	+	0	NA	Intergenic	Intergenic	-6011	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
183798	chr5	82225601	82225900	+	0	NA	intron (NM_031482, intron 5 of 7)	intron (NM_031482, intron 5 of 7)	52604	NM_001025	6228		NM_001025	ENSG00000186468	RPS23	BTDD|MABAS|MCINS|PAMAS|S23|uS12	ribosomal protein S23	protein-coding
171463	chr3	196358741	196359580	+	0	NA	intron (NM_015562, intron 10 of 10)	Tigger1|DNA|TcMar-Tigger	-20740	NR_037950	100534611		NR_037950		TM4SF19-DYNLT2B	TM4SF19-TCTEX1D2	TM4SF19-DYNLT2B readthrough (NMD candidate)	ncRNA
225514	chr9	35703351	35703650	+	0	NA	intron (NM_006289, intron 48 of 56)	intron (NM_006289, intron 48 of 56)	7241	NR_106911	102465513		NR_106911	ENSG00000284195	MIR6852	hsa-mir-6852	microRNA 6852	ncRNA
73105	chr15	41112551	41112850	+	0	NA	intron (NR_104038, intron 1 of 34)	AluSc|SINE|Alu	3546	NR_104038	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
27924	chr10	41907321	41907780	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	460495	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
226361	chr9	70009651	70009750	+	0	NA	Intergenic	HSMAR2|DNA|TcMar-Mariner	-33881	NM_001347990	256691		NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
118968	chr19	38856901	38858300	+	0	NA	Intergenic	L2|LINE|L2	-5253	NM_001005335	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
80622	chr16	2974421	2974680	+	0	NA	exon (NM_001258451, exon 5 of 9)	exon (NM_001258451, exon 5 of 9)	5202	NM_001284511	124222		NM_152341	ENSG00000162073	PAQR4	-	progestin and adipoQ receptor family member 4	protein-coding
74214	chr15	56208901	56209250	+	0	NA	intron (NM_001370561, intron 4 of 11)	L1MC1|LINE|L1	-19143	NM_001368074	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
11886	chr1	93164401	93164800	+	0	NA	intron (NR_030761, intron 1 of 4)	L1MEd|LINE|L1	15813	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
97631	chr17	44184251	44184950	+	0	NA	intron (NR_049729, intron 1 of 3)	AluJr|SINE|Alu	2117	NR_049730	339201		NM_178542	ENSG00000267080	ASB16-AS1	C17orf65	ASB16 antisense RNA 1	ncRNA
76276	chr15	74098021	74098930	+	0	NA	intron (NR_160652, intron 1 of 4)	intron (NR_160652, intron 1 of 4)	1731	NR_160652	732265		NR_160652		COMMD4P2	-	COMM domain containing 4 pseudogene 2	pseudo
139862	chr2	230601601	230601930	+	0	NA	Intergenic	Intergenic	98764	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
176135	chr4	83113021	83113730	+	0	NA	intron (NM_016619, intron 1 of 4)	intron (NM_016619, intron 1 of 4)	1354	NM_001130715	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
149271	chr21	26717271	26717430	+	0	NA	Intergenic	Intergenic	128059	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
237674	chrX	124345771	124347250	+	0	NA	promoter-TSS (NM_002351)	promoter-TSS (NM_002351)	-53	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
52081	chr12	54052601	54053200	+	0	NA	promoter-TSS (NM_153633)	promoter-TSS (NM_153633)	-935	NM_153633	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
189743	chr5	176591801	176592400	+	0	NA	intron (NM_017675, intron 30 of 31)	(GGT)n|Simple_repeat|Simple_repeat	18056	NM_052899	114787		NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
77473	chr15	84505521	84506000	+	0	NA	TTS (NR_003246)	TTS (NR_003246)	3185	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
186540	chr5	138447921	138448380	+	0	NA	Intergenic	Intergenic	9093	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
9535	chr1	51501121	51502130	+	0	NA	intron (NM_001981, intron 1 of 24)	AluSx1|SINE|Alu	17641	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
234026	chrX	3741151	3741250	+	0	NA	Intergenic	L1MC1|LINE|L1	-27551	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
77325	chr15	82500651	82500950	+	0	NA	intron (NR_026811, intron 1 of 7)	L1MB8|LINE|L1	13195	NR_102747	727751		NR_102747		LOC727751	-	golgin A2 pseudogene	pseudo
91990	chr17	7433171	7433730	+	0	NA	TTS (NM_001364672)	TTS (NM_001364672)	-1985	NM_178518	284114		NM_178518	ENSG00000181284	TMEM102	CBAP|D2B	transmembrane protein 102	protein-coding
58845	chr12	132889521	132889780	+	0	NA	Intergenic	LTR7|LTR|ERV1	1808	NR_110919	101928530		NR_110919	ENSG00000236617	CHFR-DT	-	CHFR divergent transcript	ncRNA
6578	chr1	28752001	28752200	+	0	NA	intron (NM_016258, intron 4 of 4)	intron (NM_016258, intron 4 of 4)	15160	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
45600	chr11	118898151	118898700	+	0	NA	TTS (NM_001716)	TTS (NM_001716)	5033	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
172642	chr4	2544701	2545300	+	0	NA	intron (NM_001366318, intron 1 of 20)	AluSx|SINE|Alu	8353	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
200455	chr6	135093971	135095200	+	0	NA	Intergenic	Intergenic	-39763	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
79258	chr16	458201	458500	+	0	NA	intron (NM_001370401, intron 1 of 14)	intron (NM_001370401, intron 1 of 14)	-16574	NM_001142272	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
96179	chr17	39728871	39729030	+	0	NA	TTS (NM_001382787)	TTS (NM_001382787)	1582	NM_032339	84299		NM_032339	ENSG00000141741	MIEN1	C17orf37|C35|ORB3|RDX12|XTP4	migration and invasion enhancer 1	protein-coding
181778	chr5	50747151	50748080	+	0	NA	intron (NM_024615, intron 2 of 25)	L1MEf|LINE|L1	80201	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
238448	chrX	152544851	152544950	+	0	NA	Intergenic	L1PA2|LINE|L1	-92995	NM_018558	55879		NM_018558	ENSG00000268089	GABRQ	THETA	gamma-aminobutyric acid type A receptor subunit theta	protein-coding
165617	chr3	101689401	101689650	+	0	NA	Intergenic	Intergenic	-2807	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
231645	chr9	131623871	131624180	+	0	NA	intron (NM_001377935, intron 10 of 26)	intron (NM_001377935, intron 10 of 26)	27378	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
43006	chr11	73977471	73978230	+	0	NA	intron (NM_001381949, intron 4 of 6)	intron (NM_001381949, intron 4 of 6)	4993	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
226867	chr9	78101171	78101530	+	0	NA	Intergenic	Intergenic	-69539	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
66287	chr14	61386501	61386880	+	0	NA	intron (NM_006255, intron 1 of 13)	L2c|LINE|L2	65247	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
1404	chr1	2553821	2554080	+	0	NA	intron (NR_037844, intron 3 of 6)	intron (NR_037844, intron 3 of 6)	-2415	NM_001297605	8764		NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
76083	chr15	72484171	72484900	+	0	NA	intron (NM_005744, intron 1 of 13)	L1PB1|LINE|L1	10205	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
91965	chr17	7392401	7392600	+	0	NA	intron (NM_001201576, intron 6 of 7).2	intron (NM_001201576, intron 6 of 7).2	2025	NM_020360	57048		NM_020360	ENSG00000187838	PLSCR3	-	phospholipid scramblase 3	protein-coding
70381	chr14	101924451	101924750	+	0	NA	intron (NM_002719, intron 13 of 13)	AluSg|SINE|Alu	-39973	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
74655	chr15	60917871	60918030	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	236381	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
5901	chr1	26822301	26822500	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4288	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
129585	chr2	70070791	70071550	+	0	NA	intron (NR_033872, intron 4 of 10)	intron (NR_033872, intron 4 of 10)	15845	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
159270	chr3	12958671	12959230	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	8780	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
227923	chr9	94250401	94251000	+	0	NA	intron (NR_160773, intron 1 of 2)	LTR3A|LTR|ERVK	-8566	NM_003448	169841		NM_003448	ENSG00000175787	ZNF169	-	zinc finger protein 169	protein-coding
218179	chr8	41975421	41976280	+	0	NA	intron (NM_001305878, intron 7 of 13)	intron (NM_001305878, intron 7 of 13)	-75900	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
98793	chr17	48225971	48226130	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-68297	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
109474	chr19	807071	807530	+	0	NA	intron (NM_031991, intron 9 of 13)	CpG	2360	NR_039900	100616459		NR_039900	ENSG00000284361	MIR4745	mir-4745	microRNA 4745	ncRNA
100271	chr17	59618551	59620300	+	0	NA	promoter-TSS (NM_001288653)	promoter-TSS (NM_001288653)	-264	NM_001288653	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
217721	chr8	30383921	30384180	+	0	NA	promoter-TSS (NM_001008711)	promoter-TSS (NM_001008711)	-451	NM_001008712	11030		NM_006867	ENSG00000157110	RBPMS	HERMES	RNA binding protein, mRNA processing factor	protein-coding
210349	chr7	99558071	99560350	+	0	NA	intron (NM_001363332, intron 1 of 3)	CpG	376	NM_001363334	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
195569	chr6	37498101	37498300	+	0	NA	intron (NM_138493, intron 1 of 3)	MER58A|DNA|hAT-Charlie	1693	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
175387	chr4	70721971	70722720	+	0	NA	5' UTR (NM_014961, exon 1 of 13)	5' UTR (NM_014961, exon 1 of 13)	381	NM_014961	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
130758	chr2	86817021	86817300	+	0	NA	intron (NM_001178100, intron 3 of 3)	L1ME3Cz|LINE|L1	-8764	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
179499	chr4	184644621	184645200	+	0	NA	intron (NM_001354783, intron 2 of 7)	intron (NM_001354783, intron 2 of 7)	4537	NM_004346	836		NM_004346	ENSG00000164305	CASP3	CPP32|CPP32B|SCA-1	caspase 3	protein-coding
2376	chr1	9412771	9413780	+	0	NA	Intergenic	Intergenic	15641	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
47358	chr12	2057271	2057530	+	0	NA	intron (NM_199460, intron 1 of 49)	intron (NM_199460, intron 1 of 49)	4115	NM_199460	775		NM_000719	ENSG00000151067	CACNA1C	CACH2|CACN2|CACNA1C-IT2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|NEDHLSS|TS|TS. LQT8	calcium voltage-gated channel subunit alpha1 C	protein-coding
197390	chr6	73499301	73500200	+	0	NA	intron (NM_133645, intron 12 of 12)	MER46C|DNA|TcMar-Tigger	18688	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
189644	chr5	176132851	176134200	+	0	NA	Intergenic	CpG	13976	NR_038402	202134		NM_001079529		FAM153B	-	protein FAM153B	pseudo
115256	chr19	14533351	14533650	+	0	NA	intron (NM_138501, intron 1 of 12)	intron (NM_138501, intron 1 of 12)	3906	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
237773	chrX	129770671	129770830	+	0	NA	Intergenic	AluSx|SINE|Alu	-9199	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
165789	chr3	105798371	105799350	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	68731	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
49225	chr12	19127221	19127780	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2233	NM_019012	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
195680	chr6	38355051	38355550	+	0	NA	intron (NM_152733, intron 5 of 9)	intron (NM_152733, intron 5 of 9)	-126296	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
1094	chr1	2018201	2018700	+	0	NA	promoter-TSS (NM_000815)	promoter-TSS (NM_000815)	-895	NM_000815	2563		NM_000815	ENSG00000187730	GABRD	EIG10|EJM7|GABAARdelta|GEFSP5	gamma-aminobutyric acid type A receptor subunit delta	protein-coding
85598	chr16	53517771	53518080	+	0	NA	Intergenic	MIR3|SINE|MIR	-14621	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
162927	chr3	49430901	49431100	+	0	NA	Intergenic	AluSq|SINE|Alu	-1676	NM_032316	84276		NM_032316	ENSG00000145029	NICN1	-	nicolin 1, tubulin polyglutamylase complex subunit	protein-coding
229813	chr9	125632471	125632830	+	0	NA	intron (NM_024117, intron 4 of 10)	L3b|LINE|CR1	74558	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
44628	chr11	108948121	108948380	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	283181	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
108745	chr18	77109651	77109750	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	23083	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
177697	chr4	121900251	121900830	+	0	NA	intron (NM_003305, intron 8 of 10)	intron (NM_003305, intron 8 of 10)	-30043	NM_018190	55212		NM_018190	ENSG00000138686	BBS7	BBS2L1	Bardet-Biedl syndrome 7	protein-coding
140474	chr2	233180821	233181080	+	0	NA	intron (NM_001017915, intron 18 of 26).2	AluSz6|SINE|Alu	-70621	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
28469	chr10	49397751	49398430	+	0	NA	Intergenic	CpG-2907	-2001	NM_001276451	644168		NM_001080520	ENSG00000165606	DRGX	DRG11|PRRXL1	dorsal root ganglia homeobox	protein-coding
191894	chr6	15348401	15348800	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	99745	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
214847	chr7	151311471	151311630	+	0	NA	Intergenic	LTR41|LTR|ERVL	-30262	NM_001385355	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
47196	chr12	813051	813350	+	0	NA	intron (NM_018979, intron 1 of 27)	AluJr|SINE|Alu	60277	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
11201	chr1	88683121	88685280	+	0	NA	promoter-TSS (NM_006256)	promoter-TSS (NM_006256)	56	NM_001320707	5586		NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
15209	chr1	149371851	149372250	+	0	NA	Intergenic	Charlie10|DNA|hAT-Charlie	-18571	NM_001364012	100996717		NM_001364012	ENSG00000286219	NOTCH2NLC	ETM6|N2N|NIID|NOTCH2NL|NOTCH2NLA|OPDM3	notch 2 N-terminal like C	protein-coding
4327	chr1	20488221	20488600	+	0	NA	Intergenic	Intergenic	-2200	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
60332	chr13	40672551	40672650	+	0	NA	Intergenic	Intergenic	-5959	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
212345	chr7	127477951	127478250	+	0	NA	intron (NR_110024, intron 2 of 3)	MIRc|SINE|MIR	1217	NR_110024	100506682		NR_110024	ENSG00000226770	LINC03012	-	long intergenic non-protein coding RNA 3012	ncRNA
212870	chr7	130865621	130866330	+	0	NA	Intergenic	Intergenic	10835	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
201141	chr6	142904821	142905150	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	40191	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
39569	chr11	61134471	61134650	+	0	NA	intron (NM_017966, intron 2 of 4)	MamGypLTR3a|LTR|Gypsy	26866	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
124411	chr19	58441671	58442130	+	0	NA	Intergenic	Intergenic	-1747	NM_003433	7691		NM_003433	ENSG00000131849	ZNF132	pHZ-12	zinc finger protein 132	protein-coding
65703	chr14	52763171	52763830	+	0	NA	intron (NM_001130701, intron 10 of 11)	L1M7|LINE|L1	28107	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
226438	chr9	71640071	71640230	+	0	NA	Intergenic	AluJb|SINE|Alu	128363	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
140102	chr2	231466501	231466980	+	0	NA	Intergenic	L1ME4b|LINE|L1	-2256	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
64180	chr14	22978021	22978580	+	0	NA	TTS (NM_001289097)	TTS (NM_001289097)	-1458	NM_198086	84962		NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
68726	chr14	90819471	90819830	+	0	NA	Intergenic	Intergenic	-3220	NM_001010854	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
210043	chr7	94620771	94620930	+	0	NA	intron (NM_001346715, intron 5 of 10)	intron (NM_001346715, intron 5 of 10)	35283	NM_001346717	8910		NM_003919	ENSG00000127990	SGCE	DYT11|ESG|epsilon-SG	sarcoglycan epsilon	protein-coding
90807	chr17	2244621	2245280	+	0	NA	intron (NM_017575, intron 8 of 18)	intron (NM_017575, intron 8 of 18)	-8103	NM_001256828	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
88084	chr16	81497671	81498180	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	2571	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
158662	chr3	5051801	5052000	+	0	NA	Intergenic	Intergenic	-70392	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
7600	chr1	35198121	35198380	+	0	NA	Intergenic	L2a|LINE|L2	-5105	NM_005066	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
127322	chr2	38960001	38960680	+	0	NA	promoter-TSS (NR_028386)	promoter-TSS (NR_028386)	4	NR_028386	375196		NR_028386	ENSG00000269210	LOC375196	-	uncharacterized LOC375196	ncRNA
214525	chr7	150507571	150507950	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-7112	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
23420	chr1	228378171	228379200	+	0	NA	exon (NM_001098623, exon 105 of 105)	exon (NM_001098623, exon 105 of 105)	18424	NR_106800	102465444		NR_106800	ENSG00000284311	MIR6742	hsa-mir-6742	microRNA 6742	ncRNA
175014	chr4	52538951	52539130	+	0	NA	Intergenic	L1HS|LINE|L1	117499	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
199552	chr6	118864351	118865200	+	0	NA	intron (NM_001378357, intron 8 of 13)	L1M3de|LINE|L1	-29377	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
183330	chr5	76726201	76726800	+	0	NA	intron (NM_001992, intron 1 of 1)	AluYk4|SINE|Alu	10374	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
80755	chr16	3157321	3158000	+	0	NA	Intergenic	CpG	13369	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
39738	chr11	61813921	61814180	+	0	NA	intron (NM_013402, intron 1 of 11)	LTR12B|LTR|ERV1	1190	NR_031729	100302263		NR_031729	ENSG00000284416	MIR1908	MIRN1908|hsa-mir-1908|mir-1908	microRNA 1908	ncRNA
49672	chr12	29411851	29411950	+	0	NA	intron (NR_073172, intron 1 of 1)	L1PA3|LINE|L1	22606	NR_073170	101055625		NR_073170	ENSG00000257599	OVCH1-AS1	-	OVCH1 antisense RNA 1	ncRNA
17442	chr1	156679021	156679300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1753	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
122293	chr19	49100071	49100430	+	0	NA	intron (NM_003089, intron 6 of 9)	intron (NM_003089, intron 6 of 9)	-14120	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
194372	chr6	32978471	32979280	+	0	NA	intron (NM_001199456, intron 9 of 11).2	MER58A|DNA|hAT-Charlie	5791	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
147151	chr20	56413201	56414050	+	0	NA	intron (NM_001164114, intron 1 of 5)	AluSz6|SINE|Alu	1365	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
174788	chr4	48016151	48017380	+	0	NA	promoter-TSS (NM_001379270)	promoter-TSS (NM_001379270)	-7	NM_207330	152519		NM_207330	ENSG00000163293	NIPAL1	NIPA3|NPAL1|SLC57A3	NIPA like domain containing 1	protein-coding
99399	chr17	49994751	49995650	+	0	NA	promoter-TSS (NM_005220)	promoter-TSS (NM_005220)	24	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
186273	chr5	134536451	134537600	+	0	NA	intron (NM_001289985, intron 2 of 11)	intron (NM_001289985, intron 2 of 11)	10917	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
104246	chr17	80730621	80731500	+	0	NA	intron (NM_020761, intron 5 of 33)	AluJb|SINE|Alu	74572	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
87853	chr16	76634871	76635100	+	0	NA	promoter-TSS (NR_110934)	promoter-TSS (NR_110934)	-13	NR_110934	101928203		NR_110934	ENSG00000250514	LINC02125	-	long intergenic non-protein coding RNA 2125	ncRNA
132457	chr2	105866401	105866830	+	0	NA	intron (NM_001004722, intron 3 of 3)	MER1B|DNA|hAT-Charlie	14768	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
109102	chr18	79982601	79983200	+	0	NA	intron (NM_001305564, intron 1 of 2)	intron (NM_001305564, intron 1 of 2)	5663	NR_131175	10907		NM_006701	ENSG00000141759	TXNL4A	BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD	thioredoxin like 4A	protein-coding
192538	chr6	25130421	25131400	+	0	NA	intron (NR_027626, intron 2 of 6)	MER4-int|LTR|ERV1	6913	NR_002174	8418		NM_003570	ENSG00000293489	CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
146741	chr20	50796801	50797000	+	0	NA	intron (NM_198799, intron 1 of 4)	AluJr4|SINE|Alu	1839	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
202459	chr6	158156151	158156450	+	0	NA	intron (NR_073096, intron 2 of 12)	intron (NR_073096, intron 2 of 12)	11962	NM_032861	84947		NM_032861	ENSG00000122335	SERAC1	-	serine active site containing 1	protein-coding
89710	chr16	89406971	89407650	+	0	NA	intron (NR_045839, intron 2 of 9)	A-rich|Low_complexity|Low_complexity	-23608	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
156740	chr22	41821751	41822050	+	0	NA	intron (NM_024821, intron 6 of 6)	L2a|LINE|L2	-11205	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
9837	chr1	54181751	54182000	+	0	NA	intron (NM_001353354, intron 5 of 6)	AluJb|SINE|Alu	18155	NM_001353353	606495		NM_001031672	ENSG00000215883	CYB5RL	-	cytochrome b5 reductase like	protein-coding
110324	chr19	1860971	1861380	+	0	NA	intron (NM_031918, intron 1 of 1)	intron (NM_031918, intron 1 of 1)	2404	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
159543	chr3	14566271	14566430	+	0	NA	Intergenic	Intergenic	-26008	NM_001080423	80852		NM_001080423	ENSG00000144596	GRIP2	-	glutamate receptor interacting protein 2	protein-coding
167094	chr3	127574571	127575930	+	0	NA	promoter-TSS (NR_106883)	promoter-TSS (NR_106883)	81	NR_106883	102466199		NR_106883	ENSG00000275067	MIR6825	hsa-mir-6825	microRNA 6825	ncRNA
16098	chr1	153598651	153599130	+	0	NA	Intergenic	Intergenic	10465	NM_001317008	140576		NM_080388	ENSG00000188643	S100A16	AAG13|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding
51904	chr12	53623821	53624480	+	0	NA	intron (NR_159377, intron 1 of 14)	intron (NR_159377, intron 1 of 14)	1840	NM_001366562	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
124597	chr2	866671	866830	+	0	NA	intron (NR_033880, intron 1 of 3)	intron (NR_033880, intron 1 of 3)	1676	NR_111963	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
160888	chr3	33719951	33720250	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-1846	NM_001365629	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
151578	chr21	46624701	46624900	+	0	NA	Intergenic	Intergenic	-10795	NM_001286677	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
157150	chr22	42858321	42858730	+	0	NA	Intergenic	AluJb|SINE|Alu	-1252	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
144963	chr20	37187721	37187980	+	0	NA	intron (NM_001324306, intron 2 of 15)	AluSz|SINE|Alu	-8302	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
126109	chr2	25981821	25983100	+	0	NA	promoter-TSS (NM_002254)	promoter-TSS (NM_002254)	37	NM_002254	3797		NM_002254	ENSG00000084731	KIF3C	-	kinesin family member 3C	protein-coding
183284	chr5	76538371	76539500	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-8474	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
101991	chr17	74762051	74762650	+	0	NA	intron (NM_004252, intron 2 of 5)	(TGGA)n|Simple_repeat|Simple_repeat	13722	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
205857	chr7	24960451	24960750	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	19578	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
135859	chr2	170878251	170878750	+	0	NA	Intergenic	LTR85c|LTR|Gypsy?	-49977	NM_001201428	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
61234	chr13	49760551	49760650	+	0	NA	intron (NM_002267, intron 1 of 16)	MLT2B5|LTR|ERVL	32082	NM_002267	3839		NM_002267	ENSG00000102753	KPNA3	IPOA4|SPG88|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
203325	chr6	170177131	170178830	+	0	NA	Intergenic	Intergenic	17338	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
37512	chr11	18526351	18527780	+	0	NA	promoter-TSS (NM_006292)	promoter-TSS (NM_006292)	-123	NM_006292	7251		NM_006292	ENSG00000074319	TSG101	TSG10|VPS23	tumor susceptibility 101	protein-coding
206496	chr7	33110921	33111380	+	0	NA	Intergenic	Intergenic	-1746	NM_203288	6100		NM_203288	ENSG00000164610	RP9	PAP-1|PAP1	RP9 pre-mRNA splicing factor	protein-coding
222990	chr8	143261251	143262480	+	0	NA	3' UTR (NM_173832, exon 3 of 3)	3' UTR (NM_173832, exon 3 of 3)	-5580	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
154552	chr22	36197851	36197950	+	0	NA	intron (NM_145660, intron 3 of 4)	MER41G|LTR|ERV1	6933	NM_030643	80832		NM_030643	ENSG00000100336	APOL4	APOL-IV|APOLIV	apolipoprotein L4	protein-coding
197292	chr6	71287071	71287230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1661	NM_001324266	79627		NM_024576	ENSG00000119900	OGFRL1	dJ331H24.1	opioid growth factor receptor like 1	protein-coding
186018	chr5	133981571	133982230	+	0	NA	intron (NM_003374, intron 5 of 8)	intron (NM_003374, intron 5 of 8)	13211	NR_134247	105379183		NR_134247		LOC105379183	-	uncharacterized LOC105379183	ncRNA
225458	chr9	35254301	35254500	+	0	NA	intron (NM_001371186, intron 6 of 38)	MLT1A0|LTR|ERVL-MaLR	-87496	NM_001371187	10497		NM_006377	ENSG00000198722	UNC13B	MUNC13|UNC13|Unc13h2|munc13-2	unc-13 homolog B	protein-coding
51828	chr12	53450901	53451100	+	0	NA	Intergenic	AluSp|SINE|Alu	-1102	NM_001128914	5094		NM_005016	ENSG00000197111	PCBP2	HNRNPE2|HNRPE2|hnRNP-E2	poly(rC) binding protein 2	protein-coding
80929	chr16	3810171	3810730	+	0	NA	intron (NM_004380, intron 3 of 30)	intron (NM_004380, intron 3 of 30)	69670	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
46997	chr12	138751	139250	+	0	NA	exon (NM_001170738, exon 4 of 14)	exon (NM_001170738, exon 4 of 14)	10169	NR_033859	574538		NR_033859	ENSG00000249695	LOC574538	-	uncharacterized LOC574538	ncRNA
10974	chr1	84300151	84300250	+	0	NA	intron (NM_001010971, intron 1 of 3)	intron (NM_001010971, intron 1 of 3)	-1508	NM_001134663	148418		NM_001010971	ENSG00000203943	SAMD13	DJL|HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding
4641	chr1	22127801	22128600	+	0	NA	intron (NM_030761, intron 2 of 4)	intron (NM_030761, intron 2 of 4)	14897	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
61452	chr13	52008521	52009080	+	0	NA	intron (NM_001330579, intron 1 of 18)	L2a|LINE|L2	2650	NM_000053	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
37388	chr11	17073101	17074330	+	0	NA	TTS (NR_000022)	TTS (NR_000022)	1029	NR_000022	26822		NR_000022	ENSG00000272034	SNORD14A	RNU14|RNU14A|U14|U14-S13-5	small nucleolar RNA, C/D box 14A	snoRNA
191358	chr6	7195771	7196530	+	0	NA	intron (NM_001003698, intron 6 of 11)	intron (NM_001003698, intron 6 of 11)	88189	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
171521	chr3	196648421	196648680	+	0	NA	intron (NM_198565, intron 1 of 2)	AluSp|SINE|Alu	8856	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
24845	chr10	434601	435000	+	0	NA	intron (NM_014974, intron 4 of 36)	L1MC1|LINE|L1	-193764	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
204794	chr7	5626601	5626800	+	0	NA	intron (NM_207111, intron 15 of 16)	intron (NM_207111, intron 15 of 16)	33884	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
55129	chr12	98601171	98601580	+	0	NA	exon (NM_005888, exon 8 of 8)	exon (NM_005888, exon 8 of 8)	1740	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
51121	chr12	50088351	50088930	+	0	NA	intron (NM_139071, intron 6 of 11)	intron (NM_139071, intron 6 of 11)	3298	NM_003076	6602		NM_003076	ENSG00000066117	SMARCD1	BAF60A|CRACD1|CSS11|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding
70480	chr14	102081271	102081630	+	0	NA	3' UTR (NM_005348, exon 11 of 11)	3' UTR (NM_005348, exon 11 of 11)	5594	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
180505	chr5	14264621	14264880	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	121408	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
212463	chr7	128461121	128461680	+	0	NA	Intergenic	AluSz|SINE|Alu	5522	NM_013332	29923		NM_013332	ENSG00000135245	HILPDA	C7orf68|HIG-2|HIG2	hypoxia inducible lipid droplet associated	protein-coding
56386	chr12	113182871	113183030	+	0	NA	intron (NM_024072, intron 1 of 19)	AluJb|SINE|Alu	2528	NM_024072	79039		NM_024072	ENSG00000123064	DDX54	DP97	DEAD-box helicase 54	protein-coding
194543	chr6	33320251	33320350	+	0	NA	intron (NM_001254717, intron 3 of 6)	intron (NM_001254717, intron 3 of 6)	-2358	NM_001145338	9278		NM_005453	ENSG00000236104	ZBTB22	BING1|ZBTB22A|ZNF297|ZNF297A|fru|fruitless	zinc finger and BTB domain containing 22	protein-coding
54469	chr12	92007871	92008230	+	0	NA	intron (NR_132341, intron 1 of 4)	MER1A|DNA|hAT-Charlie	133663	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
14074	chr1	120845671	120846250	+	0	NA	Intergenic	Intergenic	5025	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
84029	chr16	29501821	29502150	+	0	NA	intron (NM_001355401, intron 2 of 7)	intron (NM_001355401, intron 2 of 7)	3889	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
185486	chr5	131299301	131300180	+	0	NA	intron (NM_001038702, intron 1 of 4)	L2a|LINE|L2	35687	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
151166	chr21	44939571	44940780	+	0	NA	promoter-TSS (NR_027128)	promoter-TSS (NR_027128)	146	NM_058190	85395		NM_058190	ENSG00000160256	SLX9	C21orf70|FAM207A|PRED56	SLX9 ribosome biogenesis factor	protein-coding
12858	chr1	110083921	110084180	+	0	NA	intron (NR_126382, intron 1 of 3)	CpG	1362	NR_126382	104355139		NR_126382	ENSG00000258673	LINC01397	-	long intergenic non-protein coding RNA 1397	ncRNA
13338	chr1	113805251	113805350	+	0	NA	intron (NM_018364, intron 1 of 6)	AluSx3|SINE|Alu	7176	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
86290	chr16	58621221	58621680	+	0	NA	intron (NM_206999, intron 1 of 30)	AluSp|SINE|Alu	8376	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
218599	chr8	55973021	55973350	+	0	NA	intron (NM_002350, intron 10 of 12)	(CTCCCCA)n|Simple_repeat|Simple_repeat	-70330	NR_145767	109617001		NR_145767	ENSG00000199405	SNORA1B	-	small nucleolar RNA, H/ACA box 1B	snoRNA
204693	chr7	5509771	5510850	+	0	NA	intron (NM_024963, intron 1 of 4)	AluSx1|SINE|Alu	3499	NM_001363441	80028		NM_024963	ENSG00000155034	FBXL18	Fbl18	F-box and leucine rich repeat protein 18	protein-coding
166981	chr3	125742921	125743250	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-31629	NR_153417	105374312		NR_153417	ENSG00000272840	LOC105374312	-	uncharacterized LOC105374312	ncRNA
192323	chr6	21987451	21987750	+	0	NA	intron (NR_015410, intron 6 of 11)	intron (NR_015410, intron 6 of 11)	159593	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
228824	chr9	112037601	112038800	+	0	NA	Intergenic	Intergenic	106100	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
152709	chr22	21641251	21642700	+	0	NA	promoter-TSS (NM_022044)	promoter-TSS (NM_022044)	-327	NM_022044	23753		NM_022044	ENSG00000128228	SDF2L1	-	stromal cell derived factor 2 like 1	protein-coding
222646	chr8	141149851	141150350	+	0	NA	intron (NM_014957, intron 5 of 22)	intron (NM_014957, intron 5 of 22)	21511	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
145588	chr20	44523221	44523480	+	0	NA	Intergenic	Intergenic	-1234	NM_198941	10955		NM_006811	ENSG00000132824	SERINC3	AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1	serine incorporator 3	protein-coding
12151	chr1	100219501	100219900	+	0	NA	intron (NM_001918, intron 4 of 10)	AluJb|SINE|Alu	30134	NM_001918	1629		NM_001918	ENSG00000137992	DBT	BCATE2|BCKAD-E2|BCKADE2|BCKDH-E2|BCOADC-E2|E2|E2B	dihydrolipoamide branched chain transacylase E2	protein-coding
93953	chr17	21419001	21420000	+	0	NA	3' UTR (NM_021012, exon 3 of 3)	3' UTR (NM_021012, exon 3 of 3)	43143	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
122140	chr19	48863021	48863280	+	0	NA	intron (NM_020904, intron 3 of 19)	L2a|LINE|L2	5467	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
148503	chr20	64075071	64075730	+	0	NA	intron (NM_001039467, intron 3 of 5)	intron (NM_001039467, intron 3 of 5)	1610	NR_106871	102466741		NR_106871	ENSG00000274034	MIR6813	hsa-mir-6813	microRNA 6813	ncRNA
50271	chr12	46353921	46354750	+	0	NA	Intergenic	Intergenic	18438	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
136839	chr2	183094401	183094600	+	0	NA	intron (NM_080876, intron 3 of 3)	intron (NM_080876, intron 3 of 3)	15753	NM_001321519	142679		NM_080876	ENSG00000162999	DUSP19	DUSP17|LMWDSP3|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding
206837	chr7	37340921	37341600	+	0	NA	intron (NM_014800, intron 2 of 21)	MLT1J|LTR|ERVL-MaLR	12408	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
86265	chr16	58496951	58497350	+	0	NA	intron (NM_022910, intron 3 of 15)	AluSx1|SINE|Alu	-2993	NR_040072	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
159372	chr3	13345521	13345780	+	0	NA	intron (NM_024923, intron 20 of 39)	intron (NM_024923, intron 20 of 39)	-62393	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
192247	chr6	20205571	20205980	+	0	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	6694	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
190025	chr5	177502651	177502950	+	0	NA	3' UTR (NM_001375794, exon 6 of 6)	3' UTR (NM_001375794, exon 6 of 6)	-5195	NM_213636	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
71813	chr15	21777171	21778180	+	0	NA	Intergenic	AluSz|SINE|Alu	-41676	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
182509	chr5	65035301	65036650	+	0	NA	Intergenic	Intergenic	267045	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
90678	chr17	1719401	1719650	+	0	NA	intron (NM_001163673, intron 1 of 9)	AluY|SINE|Alu	3002	NM_001163673	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
33226	chr10	114095821	114096700	+	0	NA	Intergenic	Intergenic	52394	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
83541	chr16	27748851	27749230	+	0	NA	intron (NM_015202, intron 15 of 27)	intron (NM_015202, intron 15 of 27)	-30011	NR_147898	100128079		NR_147898		LOC100128079	-	uncharacterized LOC100128079	ncRNA
55097	chr12	98424821	98425080	+	0	NA	Intergenic	Intergenic	32195	NR_033801	121456		NR_033801	ENSG00000293147	SLC9A7P1	-	solute carrier family 9 member 7 pseudogene 1	pseudo
175155	chr4	55545101	55547530	+	0	NA	promoter-TSS (NM_001267843)	promoter-TSS (NM_001267843)	-383	NM_001267843	9575		NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
124177	chr19	56138921	56139500	+	0	NA	Intergenic	L2b|LINE|L2	-2077	NM_018337	55311		NM_018337	ENSG00000167685	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
194270	chr6	32608351	32608680	+	0	NA	Intergenic	Intergenic	-18679	NM_001243965	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
151198	chr21	45108771	45108930	+	0	NA	intron (NM_001346688, intron 1 of 11)	intron (NM_001346688, intron 1 of 11)	33799	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
111118	chr19	3221101	3221700	+	0	NA	Intergenic	MIRc|SINE|MIR	-3261	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
136765	chr2	181394801	181395800	+	0	NA	intron (NR_130784, intron 4 of 4)	intron (NR_130784, intron 4 of 4)	-61592	NM_001316312	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
60045	chr13	32783001	32783800	+	0	NA	Intergenic	Intergenic	128252	NR_047020	100874167		NR_047020		LINC00423	-	long intergenic non-protein coding RNA 423	ncRNA
73416	chr15	43085101	43085500	+	0	NA	intron (NM_174916, intron 2 of 46)	MER46C|DNA|TcMar-Tigger	20738	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
98344	chr17	46287671	46287900	+	0	NA	intron (NM_001352769, intron 4 of 4)	intron (NM_001352769, intron 4 of 4)	-7346	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
63164	chr13	113665401	113665600	+	0	NA	Intergenic	Intergenic	-1719	NM_002929	6011		NM_002929	ENSG00000185974	GRK1	GPRK1|RHOK|RK	G protein-coupled receptor kinase 1	protein-coding
237891	chrX	131728571	131728930	+	0	NA	intron (NR_152876, intron 8 of 9)	intron (NR_152876, intron 8 of 9)	101893	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
150705	chr21	43722171	43723000	+	0	NA	intron (NM_003681, intron 1 of 10)	MLT1C|LTR|ERVL-MaLR	3456	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
30597	chr10	80158851	80159150	+	0	NA	intron (NM_145868, intron 13 of 15)	intron (NM_145868, intron 13 of 15)	26270	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
74553	chr15	60522601	60523180	+	0	NA	intron (NR_120339, intron 4 of 5)	AluSg|SINE|Alu	43712	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
115103	chr19	14293151	14294130	+	0	NA	Intergenic	Intergenic	-40103	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
192029	chr6	16439071	16439780	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	200838	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
118188	chr19	35118471	35119030	+	0	NA	intron (NM_001136007, intron 3 of 10)	intron (NM_001136007, intron 3 of 10)	2922	NM_001136009	5349		NM_005971	ENSG00000089356	FXYD3	MAT8|PLML	FXYD domain containing ion transport regulator 3	protein-coding
57682	chr12	122839771	122840530	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	4693	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
206468	chr7	32964701	32965100	+	0	NA	intron (NM_001284341, intron 2 of 10)	intron (NM_001284341, intron 2 of 10)	7460	NM_007270	11328		NM_007270	ENSG00000122642	FKBP9	FKBP60|FKBP63|PPIase	FKBP prolyl isomerase 9	protein-coding
23321	chr1	228093901	228094580	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	-3023	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
128849	chr2	63852571	63852730	+	0	NA	intron (NM_001377529, intron 2 of 11)	L2b|LINE|L2	10754	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
142630	chr20	5645451	5645780	+	0	NA	Intergenic	Intergenic	-34609	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
10627	chr1	69648571	69648930	+	0	NA	intron (NM_001366842, intron 1 of 7)	LTR33A_|LTR|ERVL	79409	NM_001366842	57554		NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
116236	chr19	17542371	17543150	+	0	NA	intron (NM_173544, intron 11 of 15)	L2b|LINE|L2	-12889	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
173890	chr4	24580121	24580380	+	0	NA	intron (NM_001358, intron 1 of 13)	AluJr|SINE|Alu	4304	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
191671	chr6	13453721	13454100	+	0	NA	intron (NM_018988, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	18153	NR_038459	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
64945	chr14	35818351	35819050	+	0	NA	Intergenic	Intergenic	-7638	NM_032352	84312		NM_032352	ENSG00000100916	BRMS1L	BRMS1|p40	BRMS1 like transcriptional repressor	protein-coding
184752	chr5	109852351	109853050	+	0	NA	intron (NM_002372, intron 19 of 21)	intron (NM_002372, intron 19 of 21)	-30482	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
145949	chr20	46091521	46091930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1763	NM_020967	57727		NM_020967	ENSG00000124160	NCOA5	CIA|bA465L10.6	nuclear receptor coactivator 5	protein-coding
25184	chr10	5551701	5552380	+	0	NA	Intergenic	Intergenic	-25794	NR_120496	100132159		NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
84197	chr16	29858821	29859380	+	0	NA	3' UTR (NM_001286586, exon 6 of 6)	3' UTR (NM_001286586, exon 6 of 6)	4126	NM_006319	10423		NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
39005	chr11	47722001	47723030	+	0	NA	intron (NM_015308, intron 15 of 16)	intron (NM_015308, intron 15 of 16)	-7146	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
180164	chr5	1414571	1414930	+	0	NA	exon (NM_001044, exon 8 of 15).2	exon (NM_001044, exon 8 of 15).2	30690	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
197127	chr6	57389271	57389430	+	0	NA	promoter-TSS (NR_036097)	promoter-TSS (NR_036097)	-782	NR_036097	100422884		NR_036097	ENSG00000212017	MIR548U	-	microRNA 548u	ncRNA
153062	chr22	23288901	23289300	+	0	NA	intron (NM_021574, intron 12 of 21)	intron (NM_021574, intron 12 of 21)	26333	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
152631	chr22	21462401	21462930	+	0	NA	Intergenic	AluJb|SINE|Alu	-4505	NM_001207052	645426		NM_001207052	ENSG00000206140	TMEM191C	-	transmembrane protein 191C	protein-coding
127220	chr2	38599621	38599990	+	0	NA	intron (NM_138394, intron 1 of 12)	intron (NM_138394, intron 1 of 12)	3123	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
90367	chr17	1239101	1239800	+	0	NA	Intergenic	L1ME1|LINE|L1	-9728	NM_001322841	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
113454	chr19	9851351	9851450	+	0	NA	Intergenic	Intergenic	6775	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
123401	chr19	53962321	53962580	+	0	NA	promoter-TSS (NM_031895)	promoter-TSS (NM_031895)	-487	NM_031895	59283		NM_031895	ENSG00000142408	CACNG8	-	calcium voltage-gated channel auxiliary subunit gamma 8	protein-coding
43244	chr11	75517121	75518100	+	0	NA	intron (NM_030792, intron 1 of 16)	LTR32|LTR|ERVL	7963	NM_001351168	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
183232	chr5	76368101	76368500	+	0	NA	Intergenic	Intergenic	-34985	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
90169	chr17	304921	305180	+	0	NA	intron (NM_006987, intron 5 of 9).2	CpG	-26469	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
177374	chr4	110633121	110633380	+	0	NA	intron (NM_001204399, intron 1 of 3)	intron (NM_001204399, intron 1 of 3)	8873	NM_001204399	5308		NM_000325	ENSG00000164093	PITX2	ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired like homeodomain 2	protein-coding
222679	chr8	141242971	141243530	+	0	NA	intron (NM_001286646, intron 2 of 8)	intron (NM_001286646, intron 2 of 8)	-11317	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
88841	chr16	87501521	87501780	+	0	NA	intron (NR_110943, intron 1 of 3)	AluY|SINE|Alu	7463	NR_110943	101928737		NR_110943	ENSG00000288568	ZCCHC14-DT	-	ZCCHC14 divergent transcript	ncRNA
27808	chr10	37857071	37858350	+	0	NA	promoter-TSS (NR_147995)	promoter-TSS (NR_147995)	-74	NM_001267605	57209		NM_021045	ENSG00000198105	ZNF248	bA162G10.3	zinc finger protein 248	protein-coding
19863	chr1	183469921	183470580	+	0	NA	intron (NR_040063, intron 2 of 4)	intron (NR_040063, intron 2 of 4)	1732	NR_040063	284649		NR_040063	ENSG00000232860	SMG7-AS1	DKFZP564C196	SMG7 antisense RNA 1	ncRNA
94710	chr17	30707501	30708100	+	0	NA	Intergenic	Intergenic	-1808	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
38489	chr11	45869271	45869630	+	0	NA	intron (NM_021117, intron 6 of 11)	intron (NM_021117, intron 6 of 11)	-16201	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
48417	chr12	9672301	9672600	+	0	NA	intron (NM_001197317, intron 1 of 3)	L1PA10|LINE|L1	2737	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
232342	chr9	135479971	135481200	+	0	NA	intron (NM_014811, intron 1 of 3)	intron (NM_014811, intron 1 of 3)	803	NM_014811	9858		NM_014811	ENSG00000196422	PPP1R26	KIAA0649|NRBE3	protein phosphatase 1 regulatory subunit 26	protein-coding
82085	chr16	14299551	14300050	+	0	NA	Intergenic	L2c|LINE|L2	-2488	NR_132983	100129781		NR_132983	ENSG00000262454	MIR193BHG	HypERlnc|lincNORS	MIR193b-365a host gene	ncRNA
203541	chr7	878921	879180	+	0	NA	intron (NM_015949, intron 1 of 8)	intron (NM_015949, intron 1 of 8)	2496	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
53643	chr12	68236321	68237430	+	0	NA	Intergenic	Intergenic	-11065	NM_018402	55801		NM_018402	ENSG00000111536	IL26	AK155|IL-26	interleukin 26	protein-coding
84399	chr16	30333051	30333450	+	0	NA	intron (NR_002453, intron 1 of 12)	intron (NR_002453, intron 1 of 12)	2124	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
113040	chr19	7972421	7972880	+	0	NA	intron (NM_001419, intron 4 of 5)	FRAM|SINE|Alu	-28984	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
70266	chr14	101720071	101720330	+	0	NA	Intergenic	L1MC3|LINE|L1	-10237	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
4899	chr1	23803501	23803700	+	0	NA	intron (NM_001166059, intron 6 of 6)	AluSq2|SINE|Alu	-2846	NM_001008216	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
88148	chr16	81632501	81633830	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	21817	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
27101	chr10	27507171	27507330	+	0	NA	intron (NR_046172, intron 1 of 5)	intron (NR_046172, intron 1 of 5)	2946	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
171345	chr3	196049151	196049930	+	0	NA	3' UTR (NM_001128148, exon 19 of 19)	3' UTR (NM_001128148, exon 19 of 19)	32550	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
193691	chr6	31115001	31115300	+	0	NA	TTS (NM_001264)	TTS (NM_001264)	350	NM_014068	170679		NM_014068	ENSG00000204540	PSORS1C1	C6orf16|SEEK1	psoriasis susceptibility 1 candidate 1	protein-coding
234522	chrX	19593651	19593980	+	0	NA	intron (NM_001353892, intron 11 of 17)	intron (NM_001353892, intron 11 of 17)	77184	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
85516	chr16	50777121	50777380	+	0	NA	intron (NR_166071, intron 6 of 16)	intron (NR_166071, intron 6 of 16)	-29422	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
204288	chr7	2662071	2662600	+	0	NA	3' UTR (NM_025250, exon 14 of 14)	3' UTR (NM_025250, exon 14 of 14)	-17187	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
49979	chr12	42126921	42127200	+	0	NA	intron (NM_001099650, intron 1 of 6)	intron (NM_001099650, intron 1 of 6)	17814	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
163469	chr3	50623751	50625130	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	7289	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
171870	chr4	762351	763050	+	0	NA	intron (NM_001317836, intron 10 of 11)	MSTB2|LTR|ERVL-MaLR	19148	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
75441	chr15	65809751	65810050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17607	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
71449	chr14	105707371	105707530	+	0	NA	Intergenic	Intergenic	-34643	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
235719	chrX	48908421	48909080	+	0	NA	intron (NM_001282649, intron 1 of 2)	intron (NM_001282649, intron 1 of 2)	2896	NM_005660	7355		NM_005660	ENSG00000102100	SLC35A2	CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL	solute carrier family 35 member A2	protein-coding
59524	chr13	27168051	27168580	+	0	NA	intron (NR_046547, intron 2 of 2)	intron (NR_046547, intron 2 of 2)	3496	NM_182488	219333		NM_182488	ENSG00000152484	USP12	UBH1|USP12L1	ubiquitin specific peptidase 12	protein-coding
3378	chr1	15687121	15687400	+	0	NA	intron (NM_015164, intron 1 of 19)	AluY|SINE|Alu	2940	NM_015164	23207		NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology and RUN domain containing M2	protein-coding
105717	chr18	2704671	2705030	+	0	NA	intron (NM_015295, intron 13 of 47)	L2|LINE|L2	49124	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
92032	chr17	7481551	7482000	+	0	NA	intron (NM_001102614, intron 1 of 1)	intron (NM_001102614, intron 1 of 1)	373	NM_001102614	643664		NM_001102614	ENSG00000259224	SLC35G6	AMAC1L3|TMEM21B	solute carrier family 35 member G6	protein-coding
105689	chr18	2663051	2663880	+	0	NA	intron (NM_015295, intron 1 of 47)	L1M5|LINE|L1	7739	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
235687	chrX	48696121	48697230	+	0	NA	promoter-TSS (NM_003173)	promoter-TSS (NM_003173)	-59	NM_003173	6839		NM_003173	ENSG00000101945	SUV39H1	H3-K9-HMTase 1|KMT1A|MG44|SUV39H	SUV39H1 histone lysine methyltransferase	protein-coding
58933	chr13	19764371	19764930	+	0	NA	intron (NM_001354909, intron 2 of 8)	AluJr|SINE|Alu	18295	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
26430	chr10	17236351	17236850	+	0	NA	intron (NM_003380, intron 9 of 9)	intron (NM_003380, intron 9 of 9)	-6615	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
1773	chr1	6034121	6034900	+	0	NA	promoter-TSS (NM_001199860)	promoter-TSS (NM_001199860)	-178	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
187709	chr5	143383421	143383680	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	19733	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
105560	chr17	83247151	83247380	+	0	NA	Intergenic	(GTTAGG)n|Simple_repeat|Simple_repeat	20368	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
153178	chr22	23835501	23835700	+	0	NA	3' UTR (NM_001317946, exon 9 of 9)	3' UTR (NM_001317946, exon 9 of 9)	3406	NM_001135751	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
51730	chr12	53220901	53222080	+	0	NA	intron (NM_001243730, intron 2 of 8)	CpG-5601	-1128	NM_001243732	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
215061	chr7	152761201	152761700	+	0	NA	intron (NM_001350942, intron 1 of 11)	intron (NM_001350942, intron 1 of 11)	1698	NM_020445	57180		NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	actin related protein 3B	protein-coding
161448	chr3	42092471	42092830	+	0	NA	intron (NM_001042646, intron 1 of 15)	intron (NM_001042646, intron 1 of 15)	1293	NM_001349246	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
69651	chr14	97925071	97925850	+	0	NA	TTS (NR_015430)	TTS (NR_015430)	52664	NR_015430	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
168645	chr3	150303721	150304000	+	0	NA	intron (NR_110186, intron 1 of 3)	intron (NR_110186, intron 1 of 3)	19887	NR_110186	101928022		NR_110186		LINC01214	-	long intergenic non-protein coding RNA 1214	ncRNA
221021	chr8	116474551	116475150	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-149791	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
114508	chr19	12788071	12788230	+	0	NA	TTS (NR_049864)	TTS (NR_049864)	1022	NR_049864	100847071		NR_049864	ENSG00000263800	MIR5684	-	microRNA 5684	ncRNA
107399	chr18	46101801	46102000	+	0	NA	intron (NM_001001937, intron 1 of 12)	AluY|SINE|Alu	2333	NM_001001937	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
22036	chr1	210373901	210374930	+	0	NA	intron (NM_018194, intron 3 of 11).2	intron (NM_018194, intron 3 of 11).2	45049	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
237397	chrX	119574001	119575880	+	0	NA	exon (NM_003336, exon 2 of 6)	exon (NM_003336, exon 2 of 6)	377	NM_001282161	7319		NM_003336	ENSG00000077721	UBE2A	HHR6A|MRXS30|MRXSN|RAD6A|UBC2	ubiquitin conjugating enzyme E2 A	protein-coding
119739	chr19	41269421	41270000	+	0	NA	intron (NM_144732, intron 2 of 14)	AluJo|SINE|Alu	4629	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
216806	chr8	22558971	22559330	+	0	NA	intron (NM_005775, intron 5 of 20)	L2a|LINE|L2	-6579	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
169473	chr3	169634701	169634900	+	0	NA	intron (NM_004991, intron 1 of 16)	intron (NM_004991, intron 1 of 16)	28912	NM_001205194	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
8103	chr1	39185601	39186450	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	101858	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
199056	chr6	111530601	111531000	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	36479	NM_001164283	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
23091	chr1	226660251	226660750	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	14568	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
230818	chr9	129035171	129035330	+	0	NA	Intergenic	AluSx|SINE|Alu	-1376	NR_138422	84895		NM_032809	ENSG00000148343	MIGA2	C9orf54|FAM73B	mitoguardin 2	protein-coding
216587	chr8	22025951	22026250	+	0	NA	intron (NM_182795, intron 4 of 8)	MER1B|DNA|hAT-Charlie	1257	NM_182795	10361		NM_182795	ENSG00000158806	NPM2	-	nucleophosmin/nucleoplasmin 2	protein-coding
132943	chr2	111451961	111452680	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	42841	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
195148	chr6	35717671	35718180	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	10658	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
12410	chr1	101331801	101332200	+	0	NA	intron (NR_126402, intron 1 of 4)	L2b|LINE|L2	8163	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
9511	chr1	51331301	51331530	+	0	NA	promoter-TSS (NM_001297662)	promoter-TSS (NM_001297662)	-851	NM_001297663	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
145976	chr20	46348801	46349330	+	0	NA	TTS (NM_001281458)	TTS (NM_001281458)	15360	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
119865	chr19	41442751	41443050	+	0	NA	promoter-TSS (NM_001130514)	promoter-TSS (NM_001130514)	-256	NM_001130514	100170765		NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
176429	chr4	89264751	89265050	+	0	NA	intron (NM_198281, intron 1 of 1)	L2a|LINE|L2	42900	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
50751	chr12	49002171	49002730	+	0	NA	3' UTR (NM_001206710, exon 12 of 12)	3' UTR (NM_001206710, exon 12 of 12)	-3075	NM_015086	23109		NM_015086	ENSG00000181418	DDN	-	dendrin	protein-coding
107093	chr18	35044921	35045750	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	3922	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
16016	chr1	152051251	152051630	+	0	NA	Intergenic	Intergenic	-14436	NM_005620	6282		NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
206331	chr7	30315551	30315850	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-25810	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
52844	chr12	57092471	57092630	+	0	NA	exon (NM_001330305, exon 3 of 6)	exon (NM_001330305, exon 3 of 6)	3436	NM_005967	4665		NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding
144183	chr20	34111301	34113030	+	0	NA	promoter-TSS (NM_001316363)	promoter-TSS (NM_001316363)	78	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
126550	chr2	28611501	28611900	+	0	NA	intron (NM_153021, intron 43 of 57)	Tigger19a|DNA|TcMar-Tigger	45343	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
206004	chr7	26207701	26208100	+	0	NA	intron (NM_016587, intron 3 of 5)	intron (NM_016587, intron 3 of 5)	6155	NM_016587	11335		NM_007276	ENSG00000122565	CBX3	HECH|HP1-GAMMA|HP1Hs-gamma|HP1gamma	chromobox 3	protein-coding
128876	chr2	64064621	64065100	+	0	NA	Intergenic	Intergenic	-45432	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
180932	chr5	34742951	34743130	+	0	NA	intron (NM_001145525, intron 4 of 19)	intron (NM_001145525, intron 4 of 19)	55481	NM_001145523	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
104318	chr17	80936721	80936980	+	0	NA	intron (NM_020761, intron 24 of 33)	intron (NM_020761, intron 24 of 33)	34363	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
129753	chr2	70992751	70993050	+	0	NA	intron (NM_144582, intron 2 of 5)	Charlie9|DNA|hAT-Charlie	1973	NM_144582	113419		NM_144582	ENSG00000144043	TEX261	TEG-261	testis expressed 261	protein-coding
6169	chr1	27421821	27422930	+	0	NA	intron (NM_006990, intron 2 of 8)	AluY|SINE|Alu	29753	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
157509	chr22	45334121	45334580	+	0	NA	intron (NR_146323, intron 9 of 11)	intron (NR_146323, intron 9 of 11)	15907	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
141235	chr2	239622921	239624080	+	0	NA	Intergenic	L1PA16|LINE|L1	-139360	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
211642	chr7	106166701	106167050	+	0	NA	Intergenic	Intergenic	-54299	NM_001381918	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
33703	chr10	120969351	120969450	+	0	NA	Intergenic	L1MB7|LINE|L1	118038	NM_018117	55717		NM_018117	ENSG00000120008	WDR11	BRWD2|DR11|HH14|SRI1|WDR15	WD repeat domain 11	protein-coding
187631	chr5	142995921	142996880	+	0	NA	intron (NR_146198, intron 11 of 22)	AluSx|SINE|Alu	-127490	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
47118	chr12	680221	680750	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-17040	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
119951	chr19	41876901	41877330	+	0	NA	promoter-TSS (NM_001783)	promoter-TSS (NM_001783)	-164	NM_021601	973		NM_001783	ENSG00000105369	CD79A	IGA|IGAlpha|MB-1|MB1	CD79a molecule	protein-coding
129904	chr2	73234001	73235150	+	0	NA	intron (NM_001009570, intron 1 of 6)	CpG-16154	267	NM_006429	10574		NM_006429	ENSG00000135624	CCT7	CCTETA|CCTH|NIP7-1|TCP1ETA	chaperonin containing TCP1 subunit 7	protein-coding
55327	chr12	103938071	103938430	+	0	NA	intron (NM_003299, intron 6 of 17)	intron (NM_003299, intron 6 of 17)	7825	NR_037425	100500842		NR_037425	ENSG00000284503	MIR3652	-	microRNA 3652	ncRNA
220675	chr8	101184551	101184650	+	0	NA	Intergenic	Intergenic	-14361	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
106207	chr18	11689051	11690330	+	0	NA	exon (NM_182978, exon 1 of 12)	exon (NM_182978, exon 1 of 12)	426	NM_182978	2774		NM_002071	ENSG00000141404	GNAL	DYT25|HG1O	G protein subunit alpha L	protein-coding
236209	chrX	65688371	65689180	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	21121	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
154635	chr22	36323771	36324530	+	0	NA	intron (NM_002473, intron 5 of 40)	intron (NM_002473, intron 5 of 40)	-37243	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
147885	chr20	62865921	62866180	+	0	NA	Intergenic	Intergenic	-4228	NM_001301726	10732		NM_006602	ENSG00000101190	TCFL5	CHA|E2BP-1|Figlb|SOSF1|bHLHe82	transcription factor like 5	protein-coding
138486	chr2	207111721	207111980	+	0	NA	intron (NR_073108, intron 3 of 4)	intron (NR_073108, intron 3 of 4)	-1777	NR_036227	100423036		NR_036227	ENSG00000253008	MIR2355	mir-2355	microRNA 2355	ncRNA
232193	chr9	134316471	134317080	+	0	NA	Intergenic	Intergenic	-9680	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
29589	chr10	71733121	71733380	+	0	NA	TTS (NM_001171930)	TTS (NM_001171930)	4600	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
129654	chr2	70232201	70232680	+	0	NA	intron (NR_147232, intron 1 of 10)	AluSp|SINE|Alu	16188	NM_022037	7072		NM_022037	ENSG00000116001	TIA1	ALS26|TIA-1|WDM	TIA1 cytotoxic granule associated RNA binding protein	protein-coding
47811	chr12	6584301	6584880	+	0	NA	intron (NM_001273, intron 25 of 39)	AluJb|SINE|Alu	-2981	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
119601	chr19	40753191	40753800	+	0	NA	intron (NM_004596, intron 1 of 5)	AluSx1|SINE|Alu	2292	NM_004596	6626		NM_004596	ENSG00000077312	SNRPA	Mud1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding
67908	chr14	74610501	74610880	+	0	NA	intron (NM_000428, intron 1 of 35)	CpG	1547	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
41370	chr11	65979201	65979730	+	0	NA	3' UTR (NM_005146, exon 20 of 20)	3' UTR (NM_005146, exon 20 of 20)	17731	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
87447	chr16	70800471	70801830	+	0	NA	promoter-TSS (NM_018052)	promoter-TSS (NM_018052)	8	NM_001351157	55697		NM_018052	ENSG00000103043	VAC14	ArPIKfyve|TAX1BP2|TRX	VAC14 component of PIKFYVE complex	protein-coding
131416	chr2	96284071	96284230	+	0	NA	intron (NM_014014, intron 31 of 44)	intron (NM_014014, intron 31 of 44)	17925	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
184880	chr5	112605121	112605380	+	0	NA	Intergenic	Intergenic	-23186	NR_104672	102467214		NR_104672	ENSG00000250358	LINC02200	-	long intergenic non-protein coding RNA 2200	ncRNA
175714	chr4	77196771	77197130	+	0	NA	Intergenic	Intergenic	39743	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
167693	chr3	130636771	130636940	+	0	NA	intron (NM_001102608, intron 27 of 35)	(CCTCTC)n|Simple_repeat|Simple_repeat	76521	NM_001102608	131873		NM_001102608	ENSG00000206384	COL6A6	-	collagen type VI alpha 6 chain	protein-coding
238225	chrX	140504051	140504550	+	0	NA	exon (NM_005634, exon 1 of 1)	exon (NM_005634, exon 1 of 1)	769	NM_005634	6658		NM_005634	ENSG00000134595	SOX3	GHDX|MRGH|PHP|PHPX|SOXB	SRY-box transcription factor 3	protein-coding
172923	chr4	3505951	3506250	+	0	NA	non-coding (NR_110005, exon 8 of 8)	non-coding (NR_110005, exon 8 of 8)	21556	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
21850	chr1	207377551	207378050	+	0	NA	Intergenic	Intergenic	56122	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
7607	chr1	35298451	35298850	+	0	NA	intron (NM_001350140, intron 2 of 27)	LTR41C|LTR|ERVL	29941	NM_001350139	9202		NM_005095	ENSG00000146463	ZMYM4	CDIR|MYM|ZNF198L3|ZNF262	zinc finger MYM-type containing 4	protein-coding
82959	chr16	21920221	21920480	+	0	NA	Intergenic	AluJo|SINE|Alu	-33011	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
195239	chr6	36314251	36314550	+	0	NA	TTS (NM_001374623)	TTS (NM_001374623)	22488	NM_001010903	389384		NM_001010903	ENSG00000189325	BNIP5	C6orf222	BCL2 interacting protein 5	protein-coding
38814	chr11	47292571	47292730	+	0	NA	intron (NR_164842, intron 20 of 33)	intron (NR_164842, intron 20 of 33)	-20540	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
112625	chr19	6770301	6770500	+	0	NA	Intergenic	L2a|LINE|L2	-2308	NM_001258207	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
90877	chr17	2380951	2381050	+	0	NA	TTS (NM_001098509)	TTS (NM_001098509)	20060	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
210743	chr7	100642451	100642850	+	0	NA	TTS (NM_016188)	TTS (NM_016188)	-1098	NM_003227	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
116178	chr19	17424771	17425500	+	0	NA	3' UTR (NM_001304547, exon 10 of 10)	3' UTR (NM_001304547, exon 10 of 10)	5088	NM_138401	93343		NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
120191	chr19	42275101	42276100	+	0	NA	intron (NM_001379480, intron 2 of 20)	intron (NM_001379480, intron 2 of 20)	6348	NM_001379482	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
227642	chr9	92953271	92953430	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	5827	NM_001083536	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
65773	chr14	54442621	54442880	+	0	NA	Intergenic	Intergenic	-1376	NM_005776	10175		NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family member 1	protein-coding
60931	chr13	46294401	46294600	+	0	NA	Intergenic	LTR72B|LTR|ERV1	3344	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
59216	chr13	23376801	23377250	+	0	NA	intron (NM_014363, intron 2 of 9)	L1MB7|LINE|L1	-1517	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
69359	chr14	94004201	94004530	+	0	NA	intron (NR_024183, intron 6 of 10).2	intron (NR_024183, intron 6 of 10).2	7064	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
168308	chr3	141556851	141557230	+	0	NA	intron (NM_006506, intron 7 of 23)	intron (NM_006506, intron 7 of 23)	70013	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
33135	chr10	112373971	112374230	+	0	NA	promoter-TSS (NM_203379)	promoter-TSS (NM_203379)	-16	NM_203379	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
99789	chr17	51176201	51176400	+	0	NA	Intergenic	AluSc|SINE|Alu	9578	NM_001018138	4831		NM_002512	ENSG00000243678	NME2	NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF	NME/NM23 nucleoside diphosphate kinase 2	protein-coding
7748	chr1	36160401	36161400	+	0	NA	intron (NM_001286365, intron 1 of 15)	intron (NM_001286365, intron 1 of 15)	4740	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
107377	chr18	46052271	46052430	+	0	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	19910	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
206447	chr7	32879571	32879930	+	0	NA	5' UTR (NM_015483, exon 2 of 4)	5' UTR (NM_015483, exon 2 of 4)	12010	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
136449	chr2	176845651	176845950	+	0	NA	Intergenic	Intergenic	208046	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
237379	chrX	119398871	119400000	+	0	NA	promoter-TSS (NM_145305)	promoter-TSS (NM_145305)	99	NM_145305	203427		NM_145305	ENSG00000077713	SLC25A43	-	solute carrier family 25 member 43	protein-coding
85224	chr16	47574271	47575030	+	0	NA	intron (NM_001031835, intron 8 of 31)	MSTB|LTR|ERVL-MaLR	113319	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
14246	chr1	143240171	143240630	+	0	NA	Intergenic	Intergenic	182192	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
165383	chr3	94042501	94042750	+	0	NA	intron (NM_144996, intron 4 of 7)	(TATG)n|Simple_repeat|Simple_repeat	-14028	NM_001001850	415117		NM_001001850	ENSG00000178750	STX19	-	syntaxin 19	protein-coding
4320	chr1	20473301	20473530	+	0	NA	Intergenic	Intergenic	12795	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
11271	chr1	89085801	89086030	+	0	NA	Intergenic	L2|LINE|L2	-20707	NM_002053	2633		NM_002053	ENSG00000117228	GBP1	hGBP1	guanylate binding protein 1	protein-coding
15279	chr1	149747751	149748130	+	0	NA	Intergenic	CpG	-34754	NR_166122	2209		NM_000566	ENSG00000150337	FCGR1A	CD64|CD64A|FCG1|FCGR1|FCRI|FcgammaRI|IGFR1	Fc gamma receptor Ia	protein-coding
41529	chr11	66275901	66276500	+	0	NA	exon (NM_030981, exon 6 of 6)	exon (NM_030981, exon 6 of 6)	-1975	NM_182553	254263		NM_182553	ENSG00000174871	CNIH2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding
45521	chr11	118728051	118728350	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-48550	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
222697	chr8	141295721	141295980	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	12438	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
48650	chr12	10420201	10420630	+	0	NA	exon (NM_007333, exon 1 of 6)	exon (NM_007333, exon 1 of 6)	180	NM_002261	3823		NM_002261	ENSG00000205810	KLRC3	NKG2-E|NKG2E	killer cell lectin like receptor C3	protein-coding
155995	chr22	39924301	39925050	+	0	NA	intron (NM_004810, intron 1 of 7)	AluSx1|SINE|Alu	-1929	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
115915	chr19	16611021	16611530	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	16929	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
192296	chr6	20706871	20707230	+	0	NA	intron (NM_017774, intron 5 of 15)	intron (NM_017774, intron 5 of 15)	172593	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
118453	chr19	35867721	35868880	+	0	NA	promoter-TSS (NM_005166)	promoter-TSS (NM_005166)	-145	NM_005166	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
10828	chr1	77943151	77943530	+	0	NA	TTS (NR_146540)	TTS (NR_146540)	35732	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
51974	chr12	53944771	53945330	+	0	NA	exon (NM_017410, exon 2 of 2)	exon (NM_017410, exon 2 of 2)	-5407	NR_047507	100874366		NR_047507	ENSG00000249641	HOXC13-AS	HOXC-AS5	HOXC13 antisense RNA	ncRNA
167794	chr3	133488921	133489180	+	0	NA	intron (NR_135276, intron 1 of 4)	AluSz6|SINE|Alu	2096	NR_135277	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
175613	chr4	75990151	75991190	+	0	NA	intron (NM_001288983, intron 1 of 20)	intron (NM_001288983, intron 1 of 20)	275	NM_018115	55153		NM_018115	ENSG00000198301	SDAD1	Sda1	SDA1 domain containing 1	protein-coding
17185	chr1	156235451	156235750	+	0	NA	intron (NM_001199663, intron 3 of 5)	AluY|SINE|Alu	-6584	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
84691	chr16	30779001	30779400	+	0	NA	3' UTR (NM_001345970, exon 3 of 3)	3' UTR (NM_001345970, exon 3 of 3)	8005	NM_001080417	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
220941	chr8	108480671	108481050	+	0	NA	intron (NM_014673, intron 10 of 10)	L1M8|LINE|L1	37236	NM_014673	9694		NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
171958	chr4	898071	898230	+	0	NA	exon (NM_005255, exon 6 of 28)	exon (NM_005255, exon 6 of 28)	34166	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
156040	chr22	39971051	39971580	+	0	NA	3' UTR (NM_001291826, exon 7 of 7)	3' UTR (NM_001291826, exon 7 of 7)	-23639	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
9830	chr1	54052401	54054180	+	0	NA	promoter-TSS (NR_039942)	promoter-TSS (NR_039942)	-86	NM_004872	9528		NM_004872	ENSG00000116209	TMEM59	C1orf8|DCF1|HSPC001|PRO195|UNQ169	transmembrane protein 59	protein-coding
146041	chr20	47349921	47350850	+	0	NA	intron (NM_001281772, intron 2 of 23)	intron (NM_001281772, intron 2 of 23)	1364	NM_001363741	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
38037	chr11	35152001	35152930	+	0	NA	intron (NM_001202557, intron 1 of 8)	MIRc|SINE|MIR	-10485	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
189349	chr5	172187901	172189180	+	0	NA	promoter-TSS (NM_005990)	promoter-TSS (NM_005990)	-316	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
64031	chr14	22520751	22521100	+	0	NA	Intergenic	Intergenic	36137	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
196611	chr6	44248731	44248850	+	0	NA	intron (NM_001371238, intron 2 of 11)	intron (NM_001371238, intron 2 of 11)	847	NM_001371238	3326		NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
174088	chr4	28256551	28256650	+	0	NA	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-562982	NR_036237	100422937		NR_036237	ENSG00000283275	MIR4275	-	microRNA 4275	ncRNA
181934	chr5	54944221	54944600	+	0	NA	Intergenic	Intergenic	41183	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
210644	chr7	100472101	100472680	+	0	NA	intron (NM_001303043, intron 3 of 4)	intron (NM_001303043, intron 3 of 4)	6824	NM_030935	81628		NM_030935	ENSG00000166925	TSC22D4	SPACDR|THG-1|THG1|TILZ2	TSC22 domain family member 4	protein-coding
171608	chr3	197311151	197311250	+	0	NA	Intergenic	L2c|LINE|L2	-11879	NM_001366203	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
143165	chr20	24107921	24108180	+	0	NA	Intergenic	Intergenic	-91717	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
10121	chr1	59293401	59293850	+	0	NA	Intergenic	MIRc|SINE|MIR	-3188	NM_001350793	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
178405	chr4	147687971	147688580	+	0	NA	Intergenic	AluJr|SINE|Alu	-4045	NM_001350142	90826		NM_138364	ENSG00000164169	PRMT9	PRMT10	protein arginine methyltransferase 9	protein-coding
49602	chr12	27435051	27435650	+	0	NA	intron (NR_109975, intron 1 of 3)	MER20|DNA|hAT-Charlie	11284	NR_109975	101928646		NR_109975	ENSG00000245311	BMAL2-AS1	ARNTL2-AS1	BMAL2 antisense RNA 1	ncRNA
192268	chr6	20377751	20377930	+	0	NA	Intergenic	Intergenic	-24039	NM_001949	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
87826	chr16	75625271	75626400	+	0	NA	Intergenic	Intergenic	-2554	NM_001324448	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
142937	chr20	18628451	18628550	+	0	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	40446	NM_080820	92675		NM_080820	ENSG00000125821	DTD1	C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68	D-aminoacyl-tRNA deacylase 1	protein-coding
29247	chr10	69103351	69104050	+	0	NA	intron (NM_002727, intron 2 of 2)	intron (NM_002727, intron 2 of 2)	15597	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
128439	chr2	55529951	55531250	+	0	NA	intron (NM_080667, intron 4 of 9)	intron (NM_080667, intron 4 of 9)	10882	NM_080667	112942		NM_080667	ENSG00000163001	CFAP36	BARTL1|CCDC104	cilia and flagella associated protein 36	protein-coding
51627	chr12	52957101	52957300	+	0	NA	Intergenic	MIRc|SINE|MIR	-7340	NR_045962	3856		NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
31265	chr10	92214101	92214500	+	0	NA	intron (NM_014912, intron 2 of 9)	MLT1A1|LTR|ERVL-MaLR	28979	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
43076	chr11	74726171	74726880	+	0	NA	intron (NM_001278473, intron 1 of 10)	intron (NM_001278473, intron 1 of 10)	4901	NM_001278473	25884		NM_015424	ENSG00000054938	CHRDL2	BNF1|CHL2	chordin like 2	protein-coding
70982	chr14	104709601	104709800	+	0	NA	exon (NM_001031714, exon 12 of 22)	exon (NM_001031714, exon 12 of 22)	-14529	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
236424	chrX	71289351	71289650	+	0	NA	intron (NM_001145408, intron 3 of 12)	AluY|SINE|Alu	5865	NM_001145408	4841		NM_007363	ENSG00000147140	NONO	MRXS34|NMT55|NRB54|P54|P54NRB|PPP1R114	non-POU domain containing octamer binding	protein-coding
181078	chr5	36744301	36745880	+	0	NA	Intergenic	Intergenic	131604	NR_046262	646719		NR_046262	ENSG00000285967	NIPBL-DT	NIPBL-AS|NIPBL-AS1	NIPBL divergent transcript	ncRNA
96109	chr17	39633471	39633780	+	0	NA	intron (NM_032192, intron 4 of 6)	intron (NM_032192, intron 4 of 6)	-3455	NM_001165937	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
25143	chr10	4285171	4285330	+	0	NA	Intergenic	AluSz|SINE|Alu	-41338	NR_108040	100652988		NR_108040		LINC00702	-	long intergenic non-protein coding RNA 702	ncRNA
45670	chr11	119027221	119027750	+	0	NA	intron (NM_001164278, intron 6 of 11)	intron (NM_001164278, intron 6 of 11)	1995	NM_001164280	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
234726	chrX	21839201	21840080	+	0	NA	promoter-TSS (NM_015884)	promoter-TSS (NM_015884)	23	NM_015884	51360		NM_015884	ENSG00000012174	MBTPS2	BRESEK|IFAP|KFSD|KFSDX|OI19|OLMSX|S2P	membrane bound transcription factor peptidase, site 2	protein-coding
213481	chr7	139042921	139043380	+	0	NA	TTS (NM_001363491)	TTS (NM_001363491)	1007	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
102173	chr17	75140821	75141650	+	0	NA	intron (NM_001002032, intron 3 of 3)	AluJb|SINE|Alu	-9440	NM_001252377	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
31290	chr10	92571621	92571880	+	0	NA	intron (NM_001322795, intron 1 of 25)	intron (NM_001322795, intron 1 of 25)	1756	NM_001322796	3416		NM_004969	ENSG00000119912	IDE	INSULYSIN	insulin degrading enzyme	protein-coding
77403	chr15	83163071	83163330	+	0	NA	intron (NM_016073, intron 2 of 5)	MER6B|DNA|TcMar-Tigger	44623	NM_016073	50810		NM_016073	ENSG00000166503	HDGFL3	CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3	HDGF like 3	protein-coding
189043	chr5	169657101	169657530	+	0	NA	intron (NR_156756, intron 2 of 52)	intron (NR_156756, intron 2 of 52)	20040	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
85712	chr16	56611651	56612430	+	0	NA	Intergenic	Intergenic	3456	NM_005953	4502		NM_005953	ENSG00000125148	MT2A	MT-2|MT-II|MT2	metallothionein 2A	protein-coding
43283	chr11	75823001	75823900	+	0	NA	intron (NM_003369, intron 1 of 14)	AluJr|SINE|Alu	8240	NM_003369	7405		NM_003369	ENSG00000198382	UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
131325	chr2	96132971	96133380	+	0	NA	intron (NM_001002036, intron 5 of 8)	intron (NM_001002036, intron 5 of 8)	5261	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
76206	chr15	73700201	73700630	+	0	NA	intron (NM_025240, intron 2 of 7)	intron (NM_025240, intron 2 of 7)	15645	NM_001329628	80381		NM_025240	ENSG00000103855	CD276	4Ig-B7-H3|B7-H3|B7H3|B7RP-2	CD276 molecule	protein-coding
68753	chr14	91054021	91054680	+	0	NA	intron (NM_001322235, intron 1 of 17)	L1MB8|LINE|L1	5774	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
24510	chr1	244603051	244603610	+	0	NA	intron (NM_173807, intron 17 of 20)	intron (NM_173807, intron 17 of 20)	-49796	NM_016076	51029		NM_016076	ENSG00000121644	DESI2	C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
12657	chr1	109266721	109267180	+	0	NA	intron (NM_001408, intron 15 of 33)	AluSc|SINE|Alu	16194	NM_001350237	84722		NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
224976	chr9	33082221	33083280	+	0	NA	Intergenic	Intergenic	-6076	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
108045	chr18	59265321	59265800	+	0	NA	Intergenic	CpG	7894	NM_013435	30062		NM_013435	ENSG00000134438	RAX	MCOP3|MCOPS16|RAX1|RX	retina and anterior neural fold homeobox	protein-coding
143504	chr20	31504171	31504330	+	0	NA	Intergenic	Intergenic	-10160	NM_178580	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
20831	chr1	201491351	201491450	+	0	NA	intron (NM_004078, intron 2 of 5)	MIR|SINE|MIR	5173	NM_001193572	1465		NM_004078	ENSG00000159176	CSRP1	CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141|HEL-S-286	cysteine and glycine rich protein 1	protein-coding
70791	chr14	103531501	103531730	+	0	NA	intron (NM_152307, intron 2 of 3)	intron (NM_152307, intron 2 of 3)	2419	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
18259	chr1	161068121	161069100	+	0	NA	intron (NM_001025598, intron 1 of 11)	intron (NM_001025598, intron 1 of 11)	1281	NM_181720	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
98383	chr17	46500951	46502130	+	0	NA	Intergenic	Intergenic	-11170	NM_001006607	474170		NM_001006607	ENSG00000238083	LRRC37A2	LRRC37	leucine rich repeat containing 37 member A2	protein-coding
74082	chr15	52681171	52681330	+	0	NA	intron (NM_001385021, intron 1 of 10)	intron (NM_001385021, intron 1 of 10)	-1862	NR_169540	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
110629	chr19	2221271	2221430	+	0	NA	intron (NM_032482, intron 23 of 27)	intron (NM_032482, intron 23 of 27)	12799	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
223823	chr8	144877951	144879480	+	0	NA	3' UTR (NM_001363099, exon 6 of 6)	3' UTR (NM_001363099, exon 6 of 6)	21590	NM_001363103	58500		NM_021061	ENSG00000196150	ZNF250	ZFP647|ZNF647	zinc finger protein 250	protein-coding
150936	chr21	44287021	44287280	+	0	NA	intron (NM_000383, intron 3 of 13)	intron (NM_000383, intron 3 of 13)	1274	NM_000383	326		NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
20138	chr1	192571671	192572430	+	0	NA	Intergenic	Intergenic	-3723	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
225183	chr9	33988521	33988950	+	0	NA	intron (NR_163243, intron 4 of 24)	intron (NR_163243, intron 4 of 24)	-35881	NR_003685	100113379		NR_003685	ENSG00000238886	SNORD121A	-	small nucleolar RNA, C/D box 121A	snoRNA
237073	chrX	103676101	103676380	+	0	NA	exon (NM_012286, exon 4 of 4)	exon (NM_012286, exon 4 of 4)	10459	NM_012286	9643		NM_012286	ENSG00000123562	MORF4L2	MORFL2|MRGX	mortality factor 4 like 2	protein-coding
165089	chr3	71488941	71490150	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	52544	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
228108	chr9	96555101	96555300	+	0	NA	intron (NR_147239, intron 4 of 14)	MLT1F|LTR|ERVL-MaLR	11631	NM_001351569	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
176204	chr4	83639921	83640250	+	0	NA	Intergenic	Intergenic	103977	NM_032717	84803		NM_032717	ENSG00000138678	GPAT3	AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1	glycerol-3-phosphate acyltransferase 3	protein-coding
61950	chr13	78978401	78978780	+	0	NA	Intergenic	Intergenic	-138540	NR_046869	100874126		NR_046869		LINC00331	NCRNA00331	long intergenic non-protein coding RNA 331	ncRNA
6539	chr1	28580931	28582400	+	0	NA	promoter-TSS (NR_003035)	promoter-TSS (NR_003035)	208	NR_024127	85028		NR_024127	ENSG00000197989	SNHG12	ASLNC04080|C1orf79|LINC00100|NCRNA00100|PNAS-123	small nucleolar RNA host gene 12	ncRNA
130058	chr2	74457071	74459950	+	0	NA	promoter-TSS (NM_012477)	promoter-TSS (NM_012477)	72	NM_012477	23559		NM_012477	ENSG00000239779	WBP1	WBP-1	WW domain binding protein 1	protein-coding
52130	chr12	54206721	54206980	+	0	NA	Intergenic	Intergenic	-17856	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
168971	chr3	152393121	152393380	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-52260	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
217021	chr8	23221001	23222050	+	0	NA	intron (NM_003844, intron 1 of 9)	intron (NM_003844, intron 1 of 9)	3577	NM_003844	8797		NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
107520	chr18	48161351	48162480	+	0	NA	intron (NM_001371291, intron 4 of 6)	CpG	-24767	NM_001039360	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
127118	chr2	37650551	37651330	+	0	NA	intron (NM_001371569, intron 1 of 1)	L1ME4b|LINE|L1	20702	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
41860	chr11	67188601	67189000	+	0	NA	intron (NM_012308, intron 5 of 20)	AluJb|SINE|Alu	-51214	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
179111	chr4	168816371	168816940	+	0	NA	intron (NM_001166108, intron 10 of 21)	intron (NM_001166108, intron 10 of 21)	-15440	NM_001367569	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
18779	chr1	167517301	167518100	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	829	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
235980	chrX	53749971	53750350	+	0	NA	Intergenic	L1M4|LINE|L1	-63441	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
88724	chr16	85999301	85999500	+	0	NA	Intergenic	Intergenic	81053	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
223241	chr8	143619051	143619350	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-1651	NM_001317783	7264		NM_003313	ENSG00000104522	GFUS	FX|P35B|SDR4E1|TSTA3	GDP-L-fucose synthase	protein-coding
189376	chr5	172707251	172707730	+	0	NA	Intergenic	Intergenic	45325	NR_049799	100847029		NR_049799	ENSG00000265160	MIR5003	-	microRNA 5003	ncRNA
218577	chr8	55779871	55780230	+	0	NA	intron (NM_001363184, intron 1 of 11)	AluSz6|SINE|Alu	6604	NM_024831	96764		NM_024831	ENSG00000137574	TGS1	NCOA6IP|PIMT|PIPMT	trimethylguanosine synthase 1	protein-coding
124924	chr2	8539971	8540500	+	0	NA	Intergenic	Intergenic	43557	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
68273	chr14	77055151	77055850	+	0	NA	intron (NR_110554, intron 1 of 3)	intron (NR_110554, intron 1 of 3)	14451	NR_110554	283575		NR_110554	ENSG00000246548	LINC02288	-	long intergenic non-protein coding RNA 2288	ncRNA
78077	chr15	90220651	90220950	+	0	NA	intron (NM_001324034, intron 4 of 13)	intron (NM_001324034, intron 4 of 13)	13141	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
1347	chr1	2482951	2483050	+	0	NA	intron (NM_001303013, intron 4 of 21)	intron (NM_001303013, intron 4 of 21)	6685	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
10730	chr1	76074251	76075380	+	0	NA	promoter-TSS (NM_001349111)	promoter-TSS (NM_001349111)	69	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
224588	chr9	20314671	20315750	+	0	NA	Intergenic	Intergenic	96028	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
41895	chr11	67259401	67260400	+	0	NA	Intergenic	Intergenic	-6573	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
45409	chr11	118350201	118350430	+	0	NA	intron (NM_000073, intron 3 of 6)	intron (NM_000073, intron 3 of 6)	5971	NM_000073	917		NM_000073	ENSG00000160654	CD3G	CD3-GAMMA|CD3GAMMA|IMD17|T3G	CD3 gamma subunit of T-cell receptor complex	protein-coding
102720	chr17	76189171	76190480	+	0	NA	intron (NM_052916, intron 2 of 18)	LTR50|LTR|ERVL	-48580	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
41401	chr11	66014351	66014650	+	0	NA	TTS (NM_001323)	TTS (NM_001323)	2492	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
79342	chr16	585351	586050	+	0	NA	Intergenic	Intergenic	-3657	NM_001172663	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
16193	chr1	153807351	153807850	+	0	NA	3' UTR (NM_020699, exon 11 of 11)	3' UTR (NM_020699, exon 11 of 11)	13653	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
126886	chr2	32276851	32276950	+	0	NA	Intergenic	Intergenic	-1004	NM_032312	84272		NM_032312	ENSG00000119820	YIPF4	FinGER4|Nbla11189|YIPFalpha2	Yip1 domain family member 4	protein-coding
134673	chr2	144472451	144472850	+	0	NA	intron (NM_014795, intron 2 of 9)	MIR|SINE|MIR	-46964	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
158255	chr22	50311751	50311850	+	0	NA	3' UTR (NM_001001794, exon 20 of 20)	3' UTR (NM_001001794, exon 20 of 20)	-4154	NM_001376869	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
161838	chr3	45688371	45690150	+	0	NA	promoter-TSS (NM_014016)	promoter-TSS (NM_014016)	-136	NM_014016	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
114621	chr19	12978951	12979250	+	0	NA	Intergenic	AluSx|SINE|Alu	9482	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
68086	chr14	75282101	75284770	+	0	NA	Intergenic	Intergenic	4607	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
87051	chr16	68309101	68309430	+	0	NA	intron (NM_032178, intron 2 of 4)	AluJr4|SINE|Alu	1681	NM_032178	84138		NM_032178	ENSG00000103061	SLC7A6OS	EPM12|Iwr1	solute carrier family 7 member 6 opposite strand	protein-coding
181162	chr5	39040971	39041130	+	0	NA	intron (NM_001285439, intron 2 of 38)	L2a|LINE|L2	33349	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
155482	chr22	38499721	38500180	+	0	NA	intron (NM_006386, intron 2 of 12)	AluSz|SINE|Alu	6361	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
1979	chr1	6602201	6604330	+	0	NA	promoter-TSS (NM_001324309)	promoter-TSS (NM_001324309)	-396	NM_014851	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
67162	chr14	68784201	68785280	+	0	NA	Intergenic	Intergenic	8327	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
144458	chr20	35560601	35560800	+	0	NA	intron (NR_119376, intron 38 of 42)	intron (NR_119376, intron 38 of 42)	18622	NM_015966	51614		NM_015966	ENSG00000125991	ERGIC3	C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2	ERGIC and golgi 3	protein-coding
237346	chrX	118535471	118535630	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	39641	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
136476	chr2	177215551	177216030	+	0	NA	exon (NM_001330247, exon 3 of 11)	exon (NM_001330247, exon 3 of 11)	2996	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
167288	chr3	128647551	128647800	+	0	NA	intron (NM_002950, intron 1 of 9)	AluJr|SINE|Alu	3143	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
203416	chr7	263301	264330	+	0	NA	Intergenic	Intergenic	-26355	NM_001374838	116033993		NM_001374838	ENSG00000248767	FOXL3	-	forkhead box L3	protein-coding
12912	chr1	110619321	110620530	+	0	NA	intron (NM_001204269, intron 1 of 4)	intron (NM_001204269, intron 1 of 4)	11515	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
73175	chr15	41490301	41490930	+	0	NA	Intergenic	Intergenic	-3259	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
28660	chr10	59907801	59908070	+	0	NA	Intergenic	Intergenic	-1379	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
191945	chr6	15993901	15994300	+	0	NA	Intergenic	Intergenic	-134986	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
183098	chr5	74626151	74626330	+	0	NA	Intergenic	Intergenic	-13783	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
96307	chr17	39961971	39962130	+	0	NA	promoter-TSS (NM_178171)	promoter-TSS (NM_178171)	-954	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
53684	chr12	68457971	68458130	+	0	NA	Intergenic	AluSz|SINE|Alu	-6566	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
184556	chr5	102762891	102763200	+	0	NA	intron (NM_001364588, intron 1 of 24)	LFSINE_Vert|SINE|tRNA	7740	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
111220	chr19	3500101	3501400	+	0	NA	promoter-TSS (NM_001145165)	promoter-TSS (NM_001145165)	-76	NM_001145165	83475		NM_031304	ENSG00000129932	DOHH	HLRC1|NEDMVIC|hDOHH	deoxyhypusine hydroxylase	protein-coding
47242	chr12	1103921	1104380	+	0	NA	intron (NM_178039, intron 3 of 17)	intron (NM_178039, intron 3 of 17)	76402	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
195167	chr6	35811101	35811500	+	0	NA	intron (NM_182548, intron 1 of 3)	MIR|SINE|MIR	5948	NM_182548	222662		NM_182548	ENSG00000197753	LHFPL5	DFNB67|TMHS|dJ510O8.8	LHFPL tetraspan subfamily member 5	protein-coding
197974	chr6	90012421	90012680	+	0	NA	intron (NM_021813, intron 5 of 8)	AluSz|SINE|Alu	118081	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
28695	chr10	60820401	60820600	+	0	NA	Intergenic	Intergenic	42022	NM_001786	983		NM_001786	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin dependent kinase 1	protein-coding
5280	chr1	25097821	25098550	+	0	NA	Intergenic	Intergenic	74682	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
125260	chr2	10434511	10435800	+	0	NA	Intergenic	Intergenic	11694	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
3603	chr1	16243571	16243730	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6467	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
66832	chr14	64800201	64800400	+	0	NA	intron (NM_001355436, intron 8 of 35)	intron (NM_001355436, intron 8 of 35)	-14614	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
134774	chr2	147429271	147429430	+	0	NA	Intergenic	Intergenic	-415167	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
79708	chr16	1308301	1310500	+	0	NA	promoter-TSS (NM_003345)	promoter-TSS (NM_003345)	-236	NM_194259	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
105332	chr17	82596471	82596630	+	0	NA	intron (NM_004514, intron 8 of 8)	intron (NM_004514, intron 8 of 8)	51894	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
88212	chr16	81831551	81833350	+	0	NA	intron (NM_002661, intron 2 of 32)	AluJb|SINE|Alu	53159	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
163745	chr3	52354751	52355100	+	0	NA	exon (NM_015512, exon 21 of 78)	exon (NM_015512, exon 21 of 78)	38606	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
23629	chr1	230280851	230281150	+	0	NA	3' UTR (NM_004481, exon 16 of 16)	3' UTR (NM_004481, exon 16 of 16)	145332	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
76723	chr15	76139401	76139880	+	0	NA	intron (NM_152335, intron 3 of 10)	intron (NM_152335, intron 3 of 10)	41846	NR_120360	101929439		NR_120360	ENSG00000259422	LOC101929439	-	uncharacterized LOC101929439	ncRNA
154756	chr22	36508771	36509380	+	0	NA	Intergenic	Intergenic	-2035	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
162594	chr3	48688951	48690080	+	0	NA	intron (NM_016291, intron 5 of 5)	intron (NM_016291, intron 5 of 5)	-3600	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
26932	chr10	26481721	26482780	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	43909	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
153236	chr22	23976871	23977950	+	0	NA	intron (NM_001355, intron 1 of 3).2	intron (NM_001355, intron 1 of 3).2	2418	NM_001355	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
33514	chr10	119183771	119184330	+	0	NA	Intergenic	Intergenic	-5238	NM_006793	10935		NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PPPCD|PRO1748|SCAR32|SP-22|prx-III	peroxiredoxin 3	protein-coding
27607	chr10	32891751	32892450	+	0	NA	Intergenic	HERVL74-int|LTR|ERVL	9372	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
37716	chr11	30586051	30586630	+	0	NA	promoter-TSS (NM_001584)	promoter-TSS (NM_001584)	13	NR_165338	744		NM_001584	ENSG00000066382	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
4453	chr1	21332771	21333300	+	0	NA	intron (NM_001113348, intron 1 of 18)	MIRb|SINE|MIR	12469	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
7912	chr1	37479421	37480700	+	0	NA	promoter-TSS (NR_106790)	promoter-TSS (NR_106790)	-170	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
161467	chr3	42228871	42229030	+	0	NA	Intergenic	Intergenic	34997	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
176810	chr4	102535401	102536080	+	0	NA	intron (NM_001382625, intron 5 of 24)	intron (NM_001382625, intron 5 of 24)	-33254	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
219984	chr8	89837001	89837200	+	0	NA	Intergenic	Intergenic	-64768	NM_004337	734		NM_004337	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
183066	chr5	73536371	73537180	+	0	NA	Intergenic	AluJr4|SINE|Alu	28864	NM_023039	57763		NM_023039	ENSG00000164331	ANKRA2	ANKRA	ankyrin repeat family A member 2	protein-coding
35822	chr11	2264551	2264850	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	5888	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
131541	chr2	96737971	96738330	+	0	NA	intron (NM_030805, intron 1 of 7)	intron (NM_030805, intron 1 of 7)	1914	NM_030805	81562		NM_030805	ENSG00000114988	LMAN2L	MRD69|MRT52|VIPL	lectin, mannose binding 2 like	protein-coding
35993	chr11	2885221	2886990	+	0	NA	promoter-TSS (NM_001122630)	promoter-TSS (NM_001122630)	-330	NM_001362474	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
52721	chr12	56600071	56600480	+	0	NA	exon (NM_013449, exon 24 of 29)	exon (NM_013449, exon 24 of 29)	30051	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
119528	chr19	40571901	40572500	+	0	NA	intron (NM_020971, intron 34 of 35)	intron (NM_020971, intron 34 of 35)	-4673	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
224949	chr9	33040171	33040800	+	0	NA	TTS (NM_001539)	TTS (NM_001539)	15212	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
116062	chr19	17225671	17227100	+	0	NA	intron (NM_024578, intron 1 of 5)	CpG	159	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
106250	chr18	12086221	12086480	+	0	NA	Intergenic	Intergenic	-7493	NM_001277333	342850		NM_001277333	ENSG00000181626	ANKRD62	DKFZp779B1634	ankyrin repeat domain 62	protein-coding
197038	chr6	53344751	53346230	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	3460	NM_001301856	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
6502	chr1	28509121	28510180	+	0	NA	TTS (NR_004404)	TTS (NR_004404)	1092	NR_004404	26768		NR_004404	ENSG00000200087	SNORA73B	105A|E1c|RNU105A|RNU17B|U17B	small nucleolar RNA, H/ACA box 73B	snoRNA
156454	chr22	41248771	41249130	+	0	NA	intron (NM_001278651, intron 16 of 16)	intron (NM_001278651, intron 16 of 16)	4100	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
229681	chr9	124551771	124552130	+	0	NA	intron (NM_001278546, intron 3 of 9)	intron (NM_001278546, intron 3 of 9)	-44551	NM_004959	2516		NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1	nuclear receptor subfamily 5 group A member 1	protein-coding
76881	chr15	77981801	77982200	+	0	NA	Intergenic	Intergenic	12225	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
54593	chr12	92470521	92470880	+	0	NA	intron (NR_144532, intron 1 of 1)	L3|LINE|CR1	4021	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
21418	chr1	205314951	205315430	+	0	NA	intron (NM_030952, intron 1 of 6)	intron (NM_030952, intron 1 of 6)	6555	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
198791	chr6	108920701	108920900	+	0	NA	intron (NM_001286609, intron 9 of 16)	LTR79|LTR|ERVL	3303	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
124199	chr19	56368001	56368600	+	0	NA	promoter-TSS (NM_001322072)	promoter-TSS (NM_001322072)	83	NM_001322072	79149		NM_024303	ENSG00000131848	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
218320	chr8	42739521	42739980	+	0	NA	Intergenic	MER4B|LTR|ERV1	29036	NM_004198	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
96936	chr17	42171771	42172130	+	0	NA	exon (NM_012285, exon 7 of 17)	exon (NM_012285, exon 7 of 17)	9192	NM_012285	23415		NM_012285	ENSG00000089558	KCNH4	BEC2|ELK1|Kv12.3	potassium voltage-gated channel subfamily H member 4	protein-coding
69157	chr14	92581851	92582530	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	5956	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
126507	chr2	28413401	28414430	+	0	NA	3' UTR (NM_005253, exon 4 of 4)	3' UTR (NM_005253, exon 4 of 4)	-19243	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
80205	chr16	2154851	2156880	+	0	NA	promoter-TSS (NR_002736)	promoter-TSS (NR_002736)	83	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
124042	chr19	55518551	55518650	+	0	NA	exon (NM_001144950, exon 14 of 14)	exon (NM_001144950, exon 14 of 14)	18533	NM_001370096	646643		NM_001101401	ENSG00000187550	SBK2	SGK069	SH3 domain binding kinase family member 2	protein-coding
216969	chr8	23041621	23041880	+	0	NA	intron (NR_027140, intron 1 of 8)	intron (NR_027140, intron 1 of 8)	-26479	NR_038873	286059		NR_038873	ENSG00000246130	TNFRSF10B-AS1	DR5-AS	TNFRSF10B antisense RNA 1	pseudo
19373	chr1	173961871	173962030	+	0	NA	exon (NM_001300852, exon 11 of 19)	exon (NM_001300852, exon 11 of 19)	31122	NM_001300850	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
15759	chr1	151159001	151159630	+	0	NA	TTS (NM_001136543)	TTS (NM_001136543)	2666	NM_024575	79626		NM_024575	ENSG00000163154	TNFAIP8L2	TIPE2	TNF alpha induced protein 8 like 2	protein-coding
11751	chr1	92298401	92299980	+	0	NA	promoter-TSS (NR_135089)	promoter-TSS (NR_135089)	131	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
107871	chr18	55415371	55415550	+	0	NA	intron (NM_001369569, intron 5 of 19)	intron (NM_001369569, intron 5 of 19)	6837	NM_001243233	6925		NM_003199	ENSG00000196628	TCF4	CDG2T|E2-2|FCD2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
52883	chr12	57198021	57198680	+	0	NA	intron (NM_002332, intron 59 of 88)	intron (NM_002332, intron 59 of 88)	3846	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
56718	chr12	120108271	120108830	+	0	NA	intron (NM_006861, intron 1 of 5)	intron (NM_006861, intron 1 of 5)	8203	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
76188	chr15	73346771	73347000	+	0	NA	intron (NM_005477, intron 1 of 7)	intron (NM_005477, intron 1 of 7)	22073	NM_005477	10021		NM_005477	ENSG00000138622	HCN4	BRGDA8|EIG18|SSS2	hyperpolarization activated cyclic nucleotide gated potassium channel 4	protein-coding
75057	chr15	64188051	64188580	+	0	NA	intron (NM_001329607, intron 10 of 11)	intron (NM_001329607, intron 10 of 11)	-25293	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
205933	chr7	25913571	25913800	+	0	NA	Intergenic	Intergenic	36301	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
239502	chrY	56761501	56762790	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-192110	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
65253	chr14	49907251	49907350	+	0	NA	Intergenic	Intergenic	14218	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
198460	chr6	106149501	106149930	+	0	NA	Intergenic	L3|LINE|CR1	50774	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
19425	chr1	174200801	174201230	+	0	NA	intron (NM_001366447, intron 1 of 20)	intron (NM_001366447, intron 1 of 20)	41495	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
39692	chr11	61734751	61736030	+	0	NA	intron (NM_006133, intron 10 of 19)	intron (NM_006133, intron 10 of 19)	-17246	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
126982	chr2	36461251	36461550	+	0	NA	intron (NM_016441, intron 4 of 16)	intron (NM_016441, intron 4 of 16)	105622	NM_016441	51232		NM_016441	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1	protein-coding
81336	chr16	4765001	4765300	+	0	NA	intron (NM_021646, intron 2 of 5)	AluJb|SINE|Alu	2012	NM_021646	26048		NM_021646	ENSG00000103199	ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
157562	chr22	45878321	45878580	+	0	NA	Intergenic	Intergenic	98712	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
56871	chr12	120287801	120288180	+	0	NA	Intergenic	AluSg|SINE|Alu	-3790	NM_001385735	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
80865	chr16	3572171	3572530	+	0	NA	intron (NR_075083, intron 1 of 20)	AluJo|SINE|Alu	5053	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
155726	chr22	39134771	39135450	+	0	NA	intron (NM_001346743, intron 4 of 5)	intron (NM_001346743, intron 4 of 5)	17570	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
133622	chr2	126664301	126665500	+	0	NA	intron (NM_016815, intron 1 of 2)	intron (NM_016815, intron 1 of 2)	8742	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
6395	chr1	27938471	27939030	+	0	NA	intron (NM_001304579, intron 1 of 7)	MER47A|DNA|TcMar-Tigger	3750	NM_001304579	27293		NM_014474	ENSG00000130768	SMPDL3B	ASML3B	sphingomyelin phosphodiesterase acid like 3B	protein-coding
126213	chr2	26846351	26847100	+	0	NA	Intergenic	Intergenic	-1407	NM_020134	56896		NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|CV2|RTSC4|Ulip6	dihydropyrimidinase like 5	protein-coding
59156	chr13	21578551	21578850	+	0	NA	intron (NM_152726, intron 1 of 11)	intron (NM_152726, intron 1 of 11)	25470	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
229064	chr9	114347551	114348100	+	0	NA	exon (NM_001317950, exon 16 of 22)	exon (NM_001317950, exon 16 of 22)	17956	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
109989	chr19	1415101	1416080	+	0	NA	intron (NM_170711, intron 1 of 12)	intron (NM_170711, intron 1 of 12)	8004	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
1631	chr1	3748351	3748450	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-1027	NR_033709	57212		NM_207306	ENSG00000293478	GFOD3P	KIAA0495|PDAM|TP73-AS1	Gfo/Idh/MocA-like oxidoreductase domain containing 3, pseudogene	pseudo
104641	chr17	81447171	81447330	+	0	NA	exon (NM_001291324, exon 12 of 29)	exon (NM_001291324, exon 12 of 29)	3938	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
8983	chr1	44645421	44645680	+	0	NA	intron (NM_001319957, intron 11 of 13)	intron (NM_001319957, intron 11 of 13)	13582	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
80890	chr16	3698901	3699580	+	0	NA	intron (NM_016292, intron 1 of 17)	intron (NM_016292, intron 1 of 17)	18284	NM_001272049	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
183107	chr5	74635971	74636130	+	0	NA	exon (NM_001256574, exon 3 of 4)	exon (NM_001256574, exon 3 of 4)	-3973	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
72873	chr15	40284021	40284500	+	0	NA	Intergenic	Intergenic	-1674	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
56178	chr12	111426451	111427350	+	0	NA	intron (NM_005475, intron 2 of 7)	MIR|SINE|MIR	-7962	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
112740	chr19	7353821	7354830	+	0	NA	intron (NM_001367823, intron 1 of 28)	AluJr|SINE|Alu	5388	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
129267	chr2	68389101	68389400	+	0	NA	intron (NM_002664, intron 6 of 8)	intron (NM_002664, intron 6 of 8)	23968	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
213608	chr7	139414671	139415200	+	0	NA	intron (NM_016019, intron 8 of 9)	AluSz|SINE|Alu	12591	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
199160	chr6	111738171	111738700	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	20696	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
115378	chr19	15240701	15241100	+	0	NA	intron (NM_001379291, intron 14 of 19)	intron (NM_001379291, intron 14 of 19)	-7853	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
77909	chr15	89206551	89207480	+	0	NA	Intergenic	Intergenic	14564	NM_000326	6017		NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
37176	chr11	13971071	13971230	+	0	NA	intron (NM_006108, intron 1 of 15)	intron (NM_006108, intron 1 of 15)	8427	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
3329	chr1	15423071	15423700	+	0	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	13497	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
184471	chr5	100779871	100780680	+	0	NA	Intergenic	Intergenic	36290	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
73927	chr15	50905701	50905900	+	0	NA	Intergenic	AluSg|SINE|Alu	-2883	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
106964	chr18	31724021	31724330	+	0	NA	Intergenic	CpG	36705	NM_001034172	147407		NM_001034172	ENSG00000141437	SLC25A52	MCART2	solute carrier family 25 member 52	protein-coding
157475	chr22	45297671	45297830	+	0	NA	Intergenic	MIRb|SINE|MIR	-11210	NR_146323	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
226089	chr9	62804101	62805000	+	0	NA	intron (NR_121647, intron 2 of 4)	L1M1|LINE|L1	3085	NR_121647	103352539		NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
11609	chr1	91700551	91700650	+	0	NA	intron (NR_036634, intron 15 of 17)	intron (NR_036634, intron 15 of 17)	185551	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
15601	chr1	150602921	150603380	+	0	NA	Intergenic	AluSx3|SINE|Alu	-23412	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
32180	chr10	101574551	101575050	+	0	NA	Intergenic	Intergenic	13457	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
166183	chr3	111690351	111690650	+	0	NA	intron (NM_153268, intron 1 of 3)	intron (NM_153268, intron 1 of 3)	-13067	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
21385	chr1	205228601	205229100	+	0	NA	promoter-TSS (NM_001375652)	promoter-TSS (NM_001375652)	-81	NM_001242925	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
19522	chr1	176073601	176073830	+	0	NA	intron (NM_022457, intron 11 of 19)	intron (NM_022457, intron 11 of 19)	-105175	NR_002998	677679		NR_002998	ENSG00000252906	SCARNA3	HBI-100	small Cajal body-specific RNA 3	ncRNA
140989	chr2	238057501	238058100	+	0	NA	intron (NR_037904, intron 8 of 18)	LTR12C|LTR|ERV1	-3201	NM_016510	51540		NM_016510	ENSG00000132330	SCLY	SCL|hSCL	selenocysteine lyase	protein-coding
213958	chr7	142740001	142740280	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-9332	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
43438	chr11	77770921	77771400	+	0	NA	intron (NM_016578, intron 1 of 15)	intron (NM_016578, intron 1 of 15)	49674	NM_016578	51773		NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
136551	chr2	177396501	177396900	+	0	NA	intron (NM_003659, intron 1 of 19)	L2b|LINE|L2	3927	NM_003659	8540		NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3	alkylglycerone phosphate synthase	protein-coding
236262	chrX	65894021	65894480	+	0	NA	Intergenic	L1PA6|LINE|L1	-124620	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
209082	chr7	74819871	74820450	+	0	NA	intron (NM_173537, intron 6 of 15)	intron (NM_173537, intron 6 of 15)	29965	NM_001368300	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
87763	chr16	75263951	75264450	+	0	NA	intron (NM_001170720, intron 1 of 7)	intron (NM_001170720, intron 1 of 7)	1807	NM_001170714	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
163174	chr3	50185271	50185430	+	0	NA	intron (NM_001318798, intron 12 of 17)	intron (NM_001318798, intron 12 of 17)	-6260	NM_144499	2779		NM_000172	ENSG00000114349	GNAT1	CSNB1G|CSNBAD3|GBT1|GNATR|HG1F	G protein subunit alpha transducin 1	protein-coding
151444	chr21	46150821	46151080	+	0	NA	promoter-TSS (NM_001350598)	promoter-TSS (NM_001350598)	-425	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
26557	chr10	21625621	21625930	+	0	NA	intron (NR_136736, intron 9 of 25)	intron (NR_136736, intron 9 of 25)	91543	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
4856	chr1	23718551	23718950	+	0	NA	Intergenic	Intergenic	-24616	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
101240	chr17	66206201	66206400	+	0	NA	Intergenic	L1MC4|LINE|L1	-14167	NM_001199165	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
81907	chr16	11733421	11733680	+	0	NA	intron (NR_136671, intron 3 of 10)	intron (NR_136671, intron 3 of 10)	9307	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
134145	chr2	134198171	134198530	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-55722	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
226383	chr9	70389551	70390300	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	24732	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
196955	chr6	52724471	52724800	+	0	NA	Intergenic	Intergenic	20524	NR_033760	730152		NR_033760		GSTA7P	GSTAP2|GSTAP6	glutathione S-transferase alpha 7, pseudogene	pseudo
115901	chr19	16592101	16592600	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-19935	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
73674	chr15	44735521	44736750	+	0	NA	promoter-TSS (NM_182985)	promoter-TSS (NM_182985)	-393	NM_001301144	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
125954	chr2	25213001	25213630	+	0	NA	Intergenic	Intergenic	9002	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
163402	chr3	50527571	50527730	+	0	NA	Intergenic	Intergenic	-23406	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
171481	chr3	196508801	196509000	+	0	NA	intron (NM_001077657, intron 2 of 2)	AluSx1|SINE|Alu	-5132	NM_152617	165918		NM_152617	ENSG00000163961	RNF168	RIDL|hRNF168	ring finger protein 168	protein-coding
94527	chr17	29567701	29570130	+	0	NA	intron (NM_138349, intron 1 of 6)	CpG-10923	214	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
53185	chr12	59637801	59638000	+	0	NA	intron (NM_001270622, intron 1 of 5)	MSTD|LTR|ERVL-MaLR	41871	NM_001270622	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
61448	chr13	51966701	51966930	+	0	NA	intron (NM_001330579, intron 4 of 18)	intron (NM_001330579, intron 4 of 18)	44635	NM_000053	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
73715	chr15	45134901	45136230	+	0	NA	exon (NM_017434, exon 7 of 35)	exon (NM_017434, exon 7 of 35)	5571	NM_017434	53905		NM_017434	ENSG00000137857	DUOX1	LNOX1|NOXEF1|THOX1	dual oxidase 1	protein-coding
24630	chr1	246601121	246601680	+	0	NA	intron (NM_001139459, intron 2 of 8)	intron (NM_001139459, intron 2 of 8)	34944	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
5226	chr1	24993801	24994380	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-29080	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
11063	chr1	85089471	85089630	+	0	NA	intron (NM_001288563, intron 7 of 21)	MER20|DNA|hAT-Charlie	27223	NM_145172	126820		NM_145172	ENSG00000162643	DNAI3	DIC3|NYD-SP29|WDR63	dynein axonemal intermediate chain 3	protein-coding
101573	chr17	68048701	68049280	+	0	NA	Intergenic	Intergenic	13030	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
142985	chr20	20182801	20183000	+	0	NA	intron (NM_015585, intron 13 of 26)	intron (NM_015585, intron 13 of 26)	126254	NM_001167816	26074		NM_015585	ENSG00000089101	CFAP61	C20orf26|CaM-IP3|SPGF84|dJ1002M8.3|dJ1178H5.4	cilia and flagella associated protein 61	protein-coding
148854	chr21	8419401	8419900	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-12880	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
28194	chr10	44863221	44863730	+	0	NA	intron (NR_033842, intron 2 of 7)	intron (NR_033842, intron 2 of 7)	-47841	NM_001345926	643236		NM_001123376	ENSG00000187783	TMEM72	C10orf127|KSP37	transmembrane protein 72	protein-coding
196605	chr6	44240351	44240650	+	0	NA	Intergenic	L1M5|LINE|L1	-5666	NM_001271970	3326		NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
125604	chr2	17878401	17879130	+	0	NA	promoter-TSS (NM_002252)	promoter-TSS (NM_002252)	98	NM_002252	3790		NM_002252	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel modifier subfamily S member 3	protein-coding
238574	chrX	153828171	153828750	+	0	NA	intron (NM_032512, intron 1 of 7)	intron (NM_032512, intron 1 of 7)	1499	NM_001303516	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
223374	chr8	143882601	143883100	+	0	NA	Intergenic	Intergenic	-4383	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
115651	chr19	16121051	16121350	+	0	NA	intron (NM_005370, intron 2 of 7)	AluSx|SINE|Alu	9311	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
200170	chr6	130602351	130602650	+	0	NA	Intergenic	Intergenic	165383	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
109548	chr19	876571	877280	+	0	NA	intron (NM_005481, intron 9 of 15)	intron (NM_005481, intron 9 of 15)	16262	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
231020	chr9	129581601	129581800	+	0	NA	Intergenic	Intergenic	-27184	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
100676	chr17	63769971	63770530	+	0	NA	intron (NM_020198, intron 1 of 12)	AluSx1|SINE|Alu	3347	NM_020198	57003		NM_020198	ENSG00000108588	CCDC47	GK001|MSTP041|THNS	coiled-coil domain containing 47	protein-coding
178411	chr4	147709621	147709880	+	0	NA	Intergenic	MER41B|LTR|ERV1	-22338	NM_024605	79658		NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
195006	chr6	35410021	35410280	+	0	NA	intron (NM_001171818, intron 3 of 8)	intron (NM_001171818, intron 3 of 8)	-42188	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
208875	chr7	73743101	73743580	+	0	NA	Intergenic	Intergenic	-4473	NM_001145364	83451		NM_148912	ENSG00000106077	ABHD11	PP1226|WBSCR21	abhydrolase domain containing 11	protein-coding
41200	chr11	65648721	65649530	+	0	NA	promoter-TSS (NR_039709)	promoter-TSS (NR_039709)	-67	NR_039709	100616284		NR_039709	ENSG00000265874	MIR4489	mir-4489	microRNA 4489	ncRNA
208340	chr7	66489251	66489550	+	0	NA	Intergenic	AluSg7|SINE|Alu	-4232	NR_134573	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
114777	chr19	13759601	13760080	+	0	NA	intron (NM_001320561, intron 9 of 10)	AluSp|SINE|Alu	-4682	NM_032285	84245		NM_032285	ENSG00000037757	MRI1	M1Pi|MRDI|MTNA|Ypr118w	methylthioribose-1-phosphate isomerase 1	protein-coding
58087	chr12	124607371	124607730	+	0	NA	Intergenic	L2a|LINE|L2	-39938	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
180446	chr5	10595651	10596150	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	31830	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
14578	chr1	145174801	145175000	+	0	NA	intron (NR_156690, intron 1 of 3)	AluJb|SINE|Alu	-7293	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
121718	chr19	47612021	47612480	+	0	NA	intron (NM_015711, intron 1 of 14)	AluJo|SINE|Alu	4054	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
145428	chr20	43463871	43464050	+	0	NA	non-coding (NR_034009, exon 7 of 7)	non-coding (NR_034009, exon 7 of 7)	6064	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
196861	chr6	49387351	49387450	+	0	NA	Intergenic	L1PA3|LINE|L1	75853	NM_000255	4594		NM_000255	ENSG00000146085	MMUT	MCM|MUT	methylmalonyl-CoA mutase	protein-coding
18119	chr1	160714151	160714800	+	0	NA	Intergenic	LTR27E|LTR|ERV1	-2624	NM_001256030	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
178597	chr4	151888401	151888830	+	0	NA	Intergenic	Intergenic	-127592	NM_001363341	5188		NM_004564	ENSG00000059691	GATB	COXPD41|HSPC199|PET112|PET112L	glutamyl-tRNA amidotransferase subunit B	protein-coding
187762	chr5	144196671	144196830	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	-8641	NM_001370487	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
47035	chr12	421951	422350	+	0	NA	intron (NM_032358, intron 5 of 12)	intron (NM_032358, intron 5 of 12)	20506	NM_032358	84318		NM_032358	ENSG00000120647	CCDC77	-	coiled-coil domain containing 77	protein-coding
137843	chr2	200695401	200695600	+	0	NA	promoter-TSS (NR_135011)	promoter-TSS (NR_135011)	-223	NR_135011	107161151		NR_135011		AOX3P-AOX2P	AOX3/AOX3L1	AOX3P-AOX2P readthrough, transcribed pseudogene	pseudo
175863	chr4	79917201	79917480	+	0	NA	intron (NM_001286781, intron 16 of 16)	intron (NM_001286781, intron 16 of 16)	89869	NR_026555	118425		NM_058168	ENSG00000251321	PCAT4	GDEP|PCA4|PCAN1	prostate cancer associated transcript 4	ncRNA
82453	chr16	16366201	16366700	+	0	NA	intron (NR_146336, intron 20 of 34)	CpG	-2426	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
125703	chr2	20411301	20411780	+	0	NA	Intergenic	L1M2a|LINE|L1	-35534	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
234995	chrX	39776451	39776950	+	0	NA	Intergenic	Intergenic	-60861	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
140548	chr2	233260751	233261350	+	0	NA	intron (NM_198890, intron 2 of 13).2	AluYm1|SINE|Alu	9377	NM_017974	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
59398	chr13	25133821	25133900	+	0	NA	Intergenic	MIR|SINE|MIR	37724	NM_030979	5042		NM_030979	ENSG00000151846	PABPC3	PABP3|PABPL3|tPABP	poly(A) binding protein cytoplasmic 3	protein-coding
12842	chr1	110062451	110063150	+	0	NA	intron (NM_006492, intron 2 of 3)	intron (NM_006492, intron 2 of 3)	7872	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
185526	chr5	131336571	131338300	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA4|LINE|L1	73382	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
2233	chr1	8862271	8863080	+	0	NA	intron (NM_001428, intron 11 of 11)	intron (NM_001428, intron 11 of 11)	3915	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
2385	chr1	9426001	9426800	+	0	NA	non-coding (NR_104623, exon 2 of 2)	non-coding (NR_104623, exon 2 of 2)	2516	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
128788	chr2	62302601	62303350	+	0	NA	Intergenic	HAL1b|LINE|L1	87454	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
149676	chr21	33644801	33645330	+	0	NA	intron (NM_001331010, intron 1 of 38)	AluJr|SINE|Alu	2564	NM_001331009	6453		NM_003024	ENSG00000205726	ITSN1	ITSN|SH3D1A|SH3P17	intersectin 1	protein-coding
102645	chr17	76037471	76037630	+	0	NA	Intergenic	AluSz|SINE|Alu	-10244	NM_001988	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
54072	chr12	76041071	76041850	+	0	NA	3' UTR (NM_004537, exon 15 of 15)	3' UTR (NM_004537, exon 15 of 15)	-9684	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
97988	chr17	45277051	45277780	+	0	NA	intron (NM_003954, intron 6 of 15)	intron (NM_003954, intron 6 of 15)	-15321	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
196367	chr6	43241101	43242580	+	0	NA	Intergenic	MIR|SINE|MIR	-1641	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
176589	chr4	98914551	98915080	+	0	NA	intron (NM_001331017, intron 1 of 7)	L1MC1|LINE|L1	14318	NM_001130678	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
190188	chr5	178206201	178207350	+	0	NA	exon (NM_004499, exon 4 of 7)	exon (NM_004499, exon 4 of 7)	2242	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
106132	chr18	9331501	9331700	+	0	NA	Intergenic	AluJb|SINE|Alu	-3173	NM_020648	57045		NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation BMP signaling modulator 1	protein-coding
216427	chr8	19412071	19412230	+	0	NA	intron (NR_148900, intron 7 of 9)	intron (NR_148900, intron 7 of 9)	98174	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
62424	chr13	99303771	99304930	+	0	NA	intron (NM_004951, intron 1 of 1)	L2c|LINE|L2	3049	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
97239	chr17	42937701	42937950	+	0	NA	Intergenic	Intergenic	26629	NM_001261434	80755		NM_001261434	ENSG00000266967	AARSD1	AlaXp	alanyl-tRNA synthetase domain containing 1	protein-coding
86780	chr16	67760421	67760680	+	0	NA	intron (NM_001320240, intron 5 of 16)	intron (NM_001320240, intron 5 of 16)	-41234	NM_001243650	81577		NM_030819	ENSG00000141098	GFOD2	-	Gfo/Idh/MocA-like oxidoreductase domain containing 2	protein-coding
137221	chr2	191569601	191569880	+	0	NA	Intergenic	Intergenic	-108332	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
143289	chr20	25283171	25283350	+	0	NA	exon (NM_002862, exon 13 of 20)	exon (NM_002862, exon 13 of 20)	35175	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
210258	chr7	99398251	99399400	+	0	NA	intron (NM_014891, intron 4 of 5)	L3|LINE|CR1	9772	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
18317	chr1	161174871	161175480	+	0	NA	exon (NM_001199873, exon 4 of 8)	exon (NM_001199873, exon 4 of 8)	2332	NM_003779	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
133400	chr2	118834851	118835150	+	0	NA	Intergenic	Intergenic	12648	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
176660	chr4	100048771	100048950	+	0	NA	Intergenic	L1PA3|LINE|L1	98366	NR_125923	256880		NR_002799		H2AZ1-DT	-	H2AZ1 divergent transcript	ncRNA
129139	chr2	65407271	65407430	+	0	NA	intron (NM_181784, intron 1 of 5)	intron (NM_181784, intron 1 of 5)	25249	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
235756	chrX	48970651	48970950	+	0	NA	5' UTR (NM_004979, exon 1 of 6)	5' UTR (NM_004979, exon 1 of 6)	1044	NM_004979	3750		NM_004979	ENSG00000102057	KCND1	KV4.1	potassium voltage-gated channel subfamily D member 1	protein-coding
182562	chr5	65927601	65928630	+	0	NA	intron (NM_001253697, intron 1 of 25)	intron (NM_001253697, intron 1 of 25)	1540	NM_001253697	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
200723	chr6	137661601	137661950	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-3871	NR_125867	102723649		NR_125867	ENSG00000230533	LINC03004	-	long intergenic non-protein coding RNA 3004	ncRNA
117273	chr19	19465651	19466050	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	30787	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
77136	chr15	79575051	79575150	+	0	NA	Intergenic	Intergenic	142764	NM_015206	23251		NM_015206	ENSG00000169330	MINAR1	KIAA1024|UBTOR	membrane integral NOTCH2 associated receptor 1	protein-coding
56003	chr12	110305101	110305300	+	0	NA	intron (NM_170665, intron 5 of 19)	AluSz|SINE|Alu	23953	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
33353	chr10	117164451	117164750	+	0	NA	intron (NR_121650, intron 1 of 1)	intron (NR_121650, intron 1 of 1)	3174	NR_037436	100500893		NR_037436	ENSG00000266782	MIR3663	-	microRNA 3663	ncRNA
32833	chr10	110015971	110016330	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-7769	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
153009	chr22	23194951	23195050	+	0	NA	intron (NM_021574, intron 1 of 21)	AluSx|SINE|Alu	14491	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
50972	chr12	49555551	49555900	+	0	NA	exon (NM_012284, exon 12 of 15)	exon (NM_012284, exon 12 of 15)	10714	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
161929	chr3	46078521	46079180	+	0	NA	intron (NM_001381860, intron 1 of 3)	ERV24_Prim-int|LTR|ERV1	6994	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
103593	chr17	78712471	78713300	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	4147	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
229408	chr9	121199571	121200180	+	0	NA	intron (NM_016322, intron 1 of 7)	MIRb|SINE|MIR	-1608	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
199313	chr6	112180121	112180430	+	0	NA	intron (NM_002290, intron 9 of 38)	intron (NM_002290, intron 9 of 38)	-56321	NR_121193	101927640		NR_121193		LAMA4-AS1	-	LAMA4 antisense RNA 1	ncRNA
4598	chr1	22082671	22082850	+	0	NA	intron (NM_044472, intron 3 of 5)	intron (NM_044472, intron 3 of 5)	30051	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
221394	chr8	123447771	123447950	+	0	NA	intron (NR_133926, intron 6 of 6)	MER58A|DNA|hAT-Charlie	31086	NM_018024	55093		NM_018024	ENSG00000156795	NTAQ1	C8orf32|WDYHV1	N-terminal glutamine amidase 1	protein-coding
50301	chr12	46403301	46403500	+	0	NA	intron (NR_125381, intron 2 of 2)	intron (NR_125381, intron 2 of 2)	19293	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
31491	chr10	96646871	96647650	+	0	NA	intron (NM_152309, intron 7 of 16)	MIRb|SINE|MIR	-60248	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
35499	chr11	1525101	1525300	+	0	NA	Intergenic	Intergenic	-38421	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
31805	chr10	98443921	98444400	+	0	NA	intron (NM_001311345, intron 2 of 18)	intron (NM_001311345, intron 2 of 18)	-2161	NR_134454	101927278		NR_134451	ENSG00000287261	HPS1-AS1	-	HPS1 antisense RNA 1	ncRNA
85172	chr16	46815171	46815400	+	0	NA	intron (NM_001001436, intron 2 of 3)	L1MB3|LINE|L1	15763	NR_145837	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
200624	chr6	136789471	136790300	+	0	NA	intron (NM_005923, intron 1 of 29)	AluSx|SINE|Alu	2592	NM_005923	4217		NM_005923	ENSG00000197442	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
72001	chr15	25858651	25860280	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	3737	NM_024490	57194		NM_024490	ENSG00000206190	ATP10A	ATP10C|ATPVA|ATPVC	ATPase phospholipid transporting 10A (putative)	protein-coding
178742	chr4	153115701	153116750	+	0	NA	Intergenic	Intergenic	-35938	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
182475	chr5	62353871	62354400	+	0	NA	intron (NM_004520, intron 6 of 19)	intron (NM_004520, intron 6 of 19)	47929	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
138526	chr2	207473201	207473630	+	0	NA	Intergenic	Intergenic	-56547	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
76866	chr15	77942471	77942830	+	0	NA	intron (NR_157580, intron 1 of 4)	intron (NR_157580, intron 1 of 4)	1911	NR_157580	440292		NR_157580		COMMD4P1	-	COMM domain containing 4 pseudogene 1	pseudo
123326	chr19	53585301	53585600	+	0	NA	Intergenic	Intergenic	18047	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
46567	chr11	128496071	128496600	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	25975	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
227890	chr9	93954071	93954900	+	0	NA	intron (NM_021570, intron 1 of 3)	CpG-28515	870	NM_021570	56033		NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
2855	chr1	11279951	11280280	+	0	NA	intron (NM_001330350, intron 1 of 1)	L2b|LINE|L2	6917	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
61626	chr13	73754821	73755680	+	0	NA	intron (NM_007249, intron 6 of 7)	intron (NM_007249, intron 6 of 7)	191006	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
179564	chr4	185203201	185205080	+	0	NA	promoter-TSS (NM_020827)	promoter-TSS (NM_020827)	-97	NM_001317781	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
126495	chr2	28403351	28404130	+	0	NA	intron (NM_005253, intron 1 of 3)	intron (NM_005253, intron 1 of 3)	-9068	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
195494	chr6	37168071	37168400	+	0	NA	Intergenic	Intergenic	-1917	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
161194	chr3	39143001	39143200	+	0	NA	exon (NM_001320560, exon 5 of 5)	exon (NM_001320560, exon 5 of 5)	4330	NM_001320559	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
3945	chr1	18597401	18597700	+	0	NA	Intergenic	Intergenic	-33296	NM_002584	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
234482	chrX	18119951	18120050	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-15356	NR_133641	105373144		NR_133641	ENSG00000225882	LINC01456	-	long intergenic non-protein coding RNA 1456	ncRNA
149649	chr21	33548871	33549330	+	0	NA	intron (NM_001291412, intron 2 of 10)	AluSg|SINE|Alu	-1562	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
68061	chr14	75255771	75256530	+	0	NA	Intergenic	AluSp|SINE|Alu	-22678	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
71984	chr15	25795721	25795980	+	0	NA	intron (NM_024490, intron 1 of 20)	MSTB1|LTR|ERVL-MaLR	52975	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
34067	chr10	124920851	124921150	+	0	NA	Intergenic	Intergenic	-21123	NM_017580	54764		NM_017580	ENSG00000019995	ZRANB1	TRABID	zinc finger RANBP2-type containing 1	protein-coding
199019	chr6	111116471	111116630	+	0	NA	intron (NM_018593, intron 1 of 5)	L1ME4c|LINE|L1	2716	NR_145796	109623478		NR_145796		SNORD166	-	small nucleolar RNA, C/D box 166	snoRNA
228097	chr9	96441801	96442130	+	0	NA	Intergenic	LTR41|LTR|ERVL	-8204	NM_014282	22927		NM_014282	ENSG00000130956	HABP4	IHABP-4|IHABP4|Ki-1/57|SERBP1L	hyaluronan binding protein 4	protein-coding
144981	chr20	37315921	37316650	+	0	NA	intron (NM_022077, intron 3 of 3)	intron (NM_022077, intron 3 of 3)	26016	NM_001376533	63905		NM_022077	ENSG00000101363	MANBAL	-	mannosidase beta like	protein-coding
88152	chr16	81648501	81648700	+	0	NA	intron (NM_030629, intron 3 of 20)	AluSx|SINE|Alu	-16754	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
153303	chr22	24182501	24183450	+	0	NA	intron (NM_019601, intron 1 of 14)	intron (NM_019601, intron 1 of 14)	1488	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
64540	chr14	24444671	24444830	+	0	NA	non-coding (NR_110032, exon 2 of 3)	non-coding (NR_110032, exon 2 of 3)	1797	NR_110032	101927045		NR_110032		LOC101927045	-	uncharacterized LOC101927045	ncRNA
176948	chr4	103046421	103047200	+	0	NA	intron (NM_178833, intron 7 of 11)	intron (NM_178833, intron 7 of 11)	-27105	NM_139173	150159		NM_139173	ENSG00000164037	SLC9B1	NHA1|NHEDC1	solute carrier family 9 member B1	protein-coding
151050	chr21	44658921	44659600	+	0	NA	TTS (NM_198697)	TTS (NM_198697)	1328	NM_198697	386683		NM_198697	ENSG00000205439	KRTAP12-3	KRTAP12.3	keratin associated protein 12-3	protein-coding
2557	chr1	9741151	9741650	+	0	NA	intron (NM_014944, intron 8 of 17)	intron (NM_014944, intron 8 of 17)	49933	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
193729	chr6	31229301	31229700	+	0	NA	Intergenic	Intergenic	31740	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
17684	chr1	157963601	157963900	+	0	NA	Intergenic	AluSz|SINE|Alu	-29523	NM_001286349	55243		NM_018240	ENSG00000183853	KIRREL1	KIRREL|NEPH1|NPHS23	kirre like nephrin family adhesion molecule 1	protein-coding
163620	chr3	52045101	52045530	+	0	NA	Intergenic	L2|LINE|L2	11256	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
141051	chr2	238245501	238245700	+	0	NA	3' UTR (NM_022817, exon 23 of 23)	3' UTR (NM_022817, exon 23 of 23)	-5562	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
38944	chr11	47512771	47512930	+	0	NA	intron (NM_001376409, intron 1 of 15)	intron (NM_001376409, intron 1 of 15)	10981	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
180479	chr5	12870671	12871240	+	0	NA	Intergenic	L3|LINE|CR1	161931	NR_147005	105374658		NR_147005		LINC02220	-	long intergenic non-protein coding RNA 2220	ncRNA
42310	chr11	68465871	68466030	+	0	NA	intron (NM_001352362, intron 2 of 24)	intron (NM_001352362, intron 2 of 24)	5198	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
132141	chr2	101724051	101724350	+	0	NA	intron (NM_001384572, intron 1 of 29)	L3|LINE|CR1	25935	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
154980	chr22	37289601	37290030	+	0	NA	intron (NM_013385, intron 1 of 12)	ERV3-16A3_I-int|LTR|ERVL	7307	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
89100	chr16	88487121	88487380	+	0	NA	intron (NM_153813, intron 2 of 9)	intron (NM_153813, intron 2 of 9)	18332	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
89468	chr16	89083301	89083500	+	0	NA	Intergenic	Intergenic	-10452	NR_147928	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
59028	chr13	20392071	20392400	+	0	NA	Intergenic	CpG	41611	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
147447	chr20	58979471	58979830	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1606	NM_198976	51497		NM_016397	ENSG00000101158	NELFCD	HSPC130|NELF-C|NELF-D|TH1|TH1L	negative elongation factor complex member C/D	protein-coding
56669	chr12	119994501	119995330	+	0	NA	intron (NR_147894, intron 1 of 8)	L1MC3|LINE|L1	5071	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
100649	chr17	63696051	63696150	+	0	NA	3' UTR (NM_203351, exon 17 of 17)	3' UTR (NM_203351, exon 17 of 17)	4025	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
179105	chr4	168631621	168631880	+	0	NA	5' UTR (NM_001166109, exon 1 of 19)	5' UTR (NM_001166109, exon 1 of 19)	172	NM_001166109	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
230647	chr9	128692101	128692530	+	0	NA	intron (NM_001374326, intron 4 of 8)	AluSz|SINE|Alu	2341	NM_001248001	6418		NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|MRD58|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
5608	chr1	26104821	26105280	+	0	NA	Intergenic	MIRc|SINE|MIR	-6115	NM_001243532	149420		NM_152835	ENSG00000175087	PDIK1L	CLIK1L|STK35L2	PDLIM1 interacting kinase 1 like	protein-coding
30967	chr10	87863201	87866080	+	0	NA	intron (NM_001304717, intron 2 of 9)	intron (NM_001304717, intron 2 of 9)	1015	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
11470	chr1	89996501	89997530	+	0	NA	intron (NM_001320185, intron 1 of 11)	Zaphod3|DNA|hAT-Tip100	1905	NM_001320185	284695		NM_181781	ENSG00000162664	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
45903	chr11	120340901	120341100	+	0	NA	intron (NM_015313, intron 1 of 40)	Charlie15b|DNA|hAT-Charlie	4587	NM_015313	23365		NM_015313	ENSG00000196914	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor 12	protein-coding
79013	chr16	38521	39430	+	0	NA	Intergenic	Intergenic	14633	NM_016310	51728		NM_016310	ENSG00000161980	POLR3K	C11|C11-RNP3|HLD21|My010|RPC10|RPC11|RPC12.5	RNA polymerase III subunit K	protein-coding
118025	chr19	34188301	34189000	+	0	NA	intron (NM_001384434, intron 1 of 9).2	L1MB5|LINE|L1	16146	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
142492	chr20	4689371	4690150	+	0	NA	intron (NM_001080123, intron 1 of 1)	intron (NM_001080123, intron 1 of 1)	3304	NM_183079	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
69217	chr14	92718921	92719350	+	0	NA	intron (NM_001008530, intron 3 of 14)	(CACCAC)n|Simple_repeat|Simple_repeat	29492	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
152762	chr22	21760791	21761500	+	0	NA	3' UTR (NM_002745, exon 9 of 9)	3' UTR (NM_002745, exon 9 of 9)	-25351	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
91693	chr17	6420301	6420780	+	0	NA	Intergenic	LTR33|LTR|ERVL	14581	NM_001033054	23746		NM_014336	ENSG00000129221	AIPL1	AIPL2|LCA4	aryl hydrocarbon receptor interacting protein like 1	protein-coding
232991	chr9	136990321	136990580	+	0	NA	Intergenic	L2a|LINE|L2	-1972	NR_138077	286257		NM_183241	ENSG00000148362	PAXX	C9orf142|XLS	PAXX non-homologous end joining factor	protein-coding
48926	chr12	12693621	12694080	+	0	NA	intron (NM_006143, intron 2 of 3)	AluSg|SINE|Alu	2333	NM_006143	2842		NM_006143	ENSG00000183150	GPR19	-	G protein-coupled receptor 19	protein-coding
5747	chr1	26475521	26475780	+	0	NA	3' UTR (NM_005517, exon 6 of 6)	3' UTR (NM_005517, exon 6 of 6)	3210	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
207041	chr7	39508121	39508380	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-58154	NM_020192	57002		NM_020192	ENSG00000241127	YAE1	C7orf36|CIAB2|GK003|YAE1D1	YAE1 maturation factor of ABCE1	protein-coding
117540	chr19	20863451	20863550	+	0	NA	Intergenic	Intergenic	-59751	NR_045830	7639		NM_003429	ENSG00000105750	ZNF85	HPF4|HTF1	zinc finger protein 85	protein-coding
128294	chr2	54605801	54606130	+	0	NA	intron (NM_178313, intron 2 of 30)	intron (NM_178313, intron 2 of 30)	47571	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
224872	chr9	31335421	31336430	+	0	NA	Intergenic	MIR|SINE|MIR	45565	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
4461	chr1	21343201	21344350	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	1729	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
4386	chr1	20784621	20785050	+	0	NA	intron (NR_164850, intron 1 of 12)	intron (NR_164850, intron 1 of 12)	1817	NM_001376789	50809		NM_016287	ENSG00000127483	HP1BP3	HP1-BP74|HP1BP74	heterochromatin protein 1 binding protein 3	protein-coding
119153	chr19	39387651	39387830	+	0	NA	intron (NR_046384, intron 10 of 13)	intron (NR_046384, intron 10 of 13)	3366	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
33634	chr10	119662371	119662530	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	11070	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
150832	chr21	44023201	44023680	+	0	NA	intron (NM_003274, intron 1 of 22)	L1MC5|LINE|L1	11131	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
65113	chr14	44846221	44846580	+	0	NA	Intergenic	Intergenic	-47274	NR_146457	101927351		NR_146457		LINC02302	-	long intergenic non-protein coding RNA 2302	ncRNA
201457	chr6	148590651	148590750	+	0	NA	Intergenic	Intergenic	81549	NM_001346509	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
131459	chr2	96341651	96342550	+	0	NA	exon (NM_001281710, exon 3 of 18)	exon (NM_001281710, exon 3 of 18)	6334	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
213521	chr7	139077921	139078430	+	0	NA	intron (NM_020119, intron 5 of 12)	AluSz|SINE|Alu	31545	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
136928	chr2	189798821	189799230	+	0	NA	intron (NM_001289408, intron 3 of 11)	intron (NM_001289408, intron 3 of 11)	14575	NM_001128143	5378		NM_000534	ENSG00000064933	PMS1	HNPCC3|MLH2|PMSL1|hPMS1	PMS1 homolog 1, mismatch repair system component	protein-coding
185895	chr5	132753321	132753850	+	0	NA	3' UTR (NM_001287253, exon 6 of 6)	3' UTR (NM_001287253, exon 6 of 6)	6140	NM_001287252	645121		NM_001039780	ENSG00000205089	CCNI2	-	cyclin I family member 2	protein-coding
103020	chr17	76993571	76993930	+	0	NA	Intergenic	AluJr|SINE|Alu	-24551	NR_136417	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
13682	chr1	116605901	116606300	+	0	NA	intron (NM_001007237, intron 5 of 10)	intron (NM_001007237, intron 5 of 10)	-35007	NM_001144822	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
140567	chr2	233323221	233323480	+	0	NA	intron (NM_000541, intron 6 of 15)	AluSx|SINE|Alu	15534	NM_000541	6295		NM_000541	ENSG00000130561	SAG	RP47|RP96|S-AG	S-antigen visual arrestin	protein-coding
116009	chr19	17122701	17122900	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	30565	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
192874	chr6	27464871	27465030	+	0	NA	intron (NM_001318893, intron 3 of 5)	AluY|SINE|Alu	7948	NM_001318892	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
143853	chr20	32531251	32531750	+	0	NA	intron (NM_001256798, intron 1 of 10)	AluSq10|SINE|Alu	21541	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
106513	chr18	21054401	21054600	+	0	NA	intron (NM_005406, intron 2 of 32)	L2a|LINE|L2	57313	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
47778	chr12	6559271	6559730	+	0	NA	intron (NM_001258310, intron 15 of 16)	AluSx|SINE|Alu	-3458	NM_001330324	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
120993	chr19	45765871	45766050	+	0	NA	exon (NM_175875, exon 3 of 3)	exon (NM_175875, exon 3 of 3)	-1836	NR_147193	109729182		NR_147193	ENSG00000267395	DM1-AS	-	DM1 locus antisense RNA	ncRNA
123688	chr19	55011851	55011950	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	26364	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
52914	chr12	57233451	57233850	+	0	NA	exon (NM_001166359, exon 9 of 12)	exon (NM_001166359, exon 9 of 12)	3284	NR_048562	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
157330	chr22	44632801	44633280	+	0	NA	Intergenic	L1MB7|LINE|L1	-7621	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
109710	chr19	1066351	1067800	+	0	NA	promoter-TSS (NM_001321232)	promoter-TSS (NM_001321232)	-91	NM_012292	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
228373	chr9	99107771	99108100	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	2822	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233573	chrX	300201	300600	+	0	NA	3' UTR (NM_018390, exon 7 of 7)	3' UTR (NM_018390, exon 7 of 7)	16922	NM_001370373	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
50609	chr12	48677251	48678230	+	0	NA	intron (NM_017822, intron 4 of 9)	AluSx3|SINE|Alu	4498	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
147331	chr20	58179121	58179900	+	0	NA	Intergenic	Intergenic	28608	NM_178456	128602		NM_178456	ENSG00000124237	CIMIP1	C20orf85|LLC1|bA196N14.1	ciliary microtubule inner protein 1	protein-coding
65326	chr14	50115751	50117280	+	0	NA	promoter-TSS (NM_024558)	promoter-TSS (NM_024558)	57	NM_001040662	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
236584	chrX	73106271	73106500	+	0	NA	Intergenic	L1HS|LINE|L1	21695	NR_027291	645996		NR_027291	ENSG00000293034	NAP1L6P	NAP1L6|lncNAP1L6	nucleosome assembly protein 1 like 6, pseudogene	pseudo
172121	chr4	1170851	1173480	+	0	NA	intron (NM_001128325, intron 2 of 6)	CpG-20801	418	NM_012445	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
147004	chr20	53571501	53571800	+	0	NA	intron (NR_110051, intron 4 of 5)	AluSx1|SINE|Alu	18880	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
16228	chr1	153939321	153939780	+	0	NA	intron (NM_014856, intron 12 of 27)	intron (NM_014856, intron 12 of 27)	5706	NM_001367466	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
68303	chr14	77301021	77301400	+	0	NA	exon (NM_013382, exon 6 of 21)	exon (NM_013382, exon 6 of 21)	19673	NM_013382	29954		NM_013382	ENSG00000009830	POMT2	LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2	protein O-mannosyltransferase 2	protein-coding
151834	chr22	18484051	18484230	+	0	NA	intron (NR_136560, intron 4 of 11)	L1MC|LINE|L1	34021	NM_001355479	728226		NM_001355479	ENSG00000274252	GGTLC3	GGT	gamma-glutamyltransferase light chain family member 3	protein-coding
123415	chr19	54050651	54050770	+	0	NA	intron (NR_110142, intron 4 of 9).4	AluSx1|SINE|Alu	13187	NM_001288791	284415		NM_198481	ENSG00000189068	VSTM1	SIRL-1|SIRL1|UNQ3033	V-set and transmembrane domain containing 1	protein-coding
66189	chr14	60753151	60754250	+	0	NA	intron (NM_002431, intron 1 of 7)	MLT1F1|LTR|ERVL-MaLR	18939	NM_001177963	4331		NM_002431	ENSG00000020426	MNAT1	CAP35|MAT1|RNF66|TFB3	MNAT1 component of CDK activating kinase	protein-coding
1928	chr1	6484851	6485890	+	0	NA	promoter-TSS (NM_001265593)	promoter-TSS (NM_001265593)	99	NM_001265593	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
8789	chr1	42923821	42925530	+	0	NA	TTS (NM_006516)	TTS (NM_006516)	34193	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
160192	chr3	23805601	23807150	+	0	NA	intron (NM_003341, intron 1 of 5)	CpG	420	NM_003341	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
109567	chr19	891751	891850	+	0	NA	intron (NM_005481, intron 1 of 15)	CpG	1387	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
9577	chr1	51896821	51897330	+	0	NA	Intergenic	Intergenic	-18138	NM_002525	4898		NM_002525	ENSG00000078618	NRDC	NRD1|hNRD1|hNRD2	nardilysin convertase	protein-coding
107480	chr18	47163321	47163850	+	0	NA	intron (NM_016097, intron 1 of 2)	intron (NM_016097, intron 1 of 2)	12779	NM_016097	51124		NM_016097	ENSG00000134049	IER3IP1	HSPC039|MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
140710	chr2	234392871	234393030	+	0	NA	Intergenic	AluJo|SINE|Alu	61645	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
152566	chr22	21048651	21049130	+	0	NA	non-coding (NR_027006, exon 3 of 11)	non-coding (NR_027006, exon 3 of 11)	2944	NR_027006	400891		NM_001013675	ENSG00000187905	LRRC74B	-	leucine rich repeat containing 74B	protein-coding
157284	chr22	44190821	44191530	+	0	NA	intron (NM_022141, intron 7 of 13)	intron (NM_022141, intron 7 of 13)	10250	NM_022141	64098		NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding
110460	chr19	2008501	2008930	+	0	NA	intron (NM_017797, intron 1 of 8)	AluJb|SINE|Alu	6999	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
47941	chr12	6830751	6831050	+	0	NA	intron (NM_014262, intron 4 of 14)	intron (NM_014262, intron 4 of 14)	2493	NM_014262	10536		NM_014262	ENSG00000110811	P3H3	GRCB|HSU47926|LEPREL2	prolyl 3-hydroxylase 3	protein-coding
206885	chr7	37686071	37686230	+	0	NA	intron (NM_001381946, intron 2 of 2)	AluJo|SINE|Alu	2384	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
216902	chr8	22690251	22690350	+	0	NA	3' UTR (NM_001199881, exon 2 of 2)	3' UTR (NM_001199881, exon 2 of 2)	2064	NM_001199880	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
102308	chr17	75353001	75353200	+	0	NA	intron (NM_203506, intron 2 of 4)	AluY|SINE|Alu	52578	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
183150	chr5	75052471	75054730	+	0	NA	Intergenic	CpG-22198	-1042	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
139186	chr2	219222921	219223380	+	0	NA	intron (NR_104255, intron 10 of 15)	AluY|SINE|Alu	-4192	NM_001349828	10058		NM_005689	ENSG00000115657	ABCB6	ABC|LAN|MTABC3|PRP|umat	ATP binding cassette subfamily B member 6 (LAN blood group)	protein-coding
160049	chr3	18444221	18446530	+	0	NA	promoter-TSS (NM_001322871)	promoter-TSS (NM_001322871)	138	NR_125803	101927777		NR_125803		SATB1-AS1	-	SATB1 antisense RNA 1	ncRNA
74314	chr15	58357771	58358630	+	0	NA	Intergenic	Intergenic	-73791	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
126778	chr2	30259401	30259800	+	0	NA	3' UTR (NM_030915, exon 3 of 3)	3' UTR (NM_030915, exon 3 of 3)	28066	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
220143	chr8	94905251	94905630	+	0	NA	intron (NM_001354524, intron 1 of 11)	intron (NM_001354524, intron 1 of 11)	9641	NR_148904	137682		NM_152416	ENSG00000156170	NDUFAF6	C8orf38|FRTS5|MC1DN17	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein-coding
150711	chr21	43725771	43726150	+	0	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	6831	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
110791	chr19	2450801	2451000	+	0	NA	intron (NM_032737, intron 1 of 11)	AluSg|SINE|Alu	6059	NM_032737	84823		NM_032737	ENSG00000176619	LMNB2	EPM9|LAMB2|LMN2|MCPH27	lamin B2	protein-coding
37632	chr11	20397021	20397550	+	0	NA	intron (NM_001145166, intron 4 of 13)	intron (NM_001145166, intron 4 of 13)	9569	NM_005788	10196		NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
36907	chr11	10790051	10791250	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	10958	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
182798	chr5	68731351	68731550	+	0	NA	Intergenic	Intergenic	298477	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
96277	chr17	39903121	39903680	+	0	NA	Intergenic	AluJr|SINE|Alu	14140	NM_001369402	55876		NM_018530	ENSG00000073605	GSDMB	GSDMB-1|GSDML|PP4052|PRO2521	gasdermin B	protein-coding
121540	chr19	47240731	47242000	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8698	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
12211	chr1	100396171	100398650	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	44904	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
216652	chr8	22126801	22127000	+	0	NA	intron (NM_018411, intron 3 of 17)	intron (NM_018411, intron 3 of 17)	4110	NM_005144	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
180511	chr5	14365921	14366530	+	0	NA	intron (NR_134469, intron 15 of 56)	intron (NR_134469, intron 15 of 56)	-97758	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
49095	chr12	14567501	14568080	+	0	NA	promoter-TSS (NR_120465)	promoter-TSS (NR_120465)	58	NR_120465	101928290		NR_120465	ENSG00000256751	PLBD1-AS1	-	PLBD1 antisense RNA 1	ncRNA
181109	chr5	37013001	37013600	+	0	NA	intron (NM_133433, intron 21 of 46)	SVA_D|Retroposon|SVA	136531	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
93459	chr17	18770271	18770630	+	0	NA	intron (NM_001267585, intron 11 of 13)	AluSg7|SINE|Alu	-10545	NM_001316922	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
95393	chr17	35906971	35907280	+	0	NA	non-coding (NR_126038, exon 1 of 1)	non-coding (NR_126038, exon 1 of 1)	3898	NR_126038	100533789		NR_126038		LRRC37A8P	-	leucine rich repeat containing 37 member A8, pseudogene	pseudo
128972	chr2	64658371	64658530	+	0	NA	Intergenic	MIR3|SINE|MIR	-4537	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
180836	chr5	32542671	32543180	+	0	NA	Intergenic	L1MB7|LINE|L1	-42632	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
102971	chr17	76717451	76718130	+	0	NA	TTS (NM_015167)	TTS (NM_015167)	-6825	NM_001008529	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
209633	chr7	77734471	77734630	+	0	NA	intron (NM_198467, intron 1 of 7)	AluSx|SINE|Alu	-37205	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
57338	chr12	121711321	121714550	+	0	NA	exon (NM_001080825, exon 1 of 12)	exon (NM_001080825, exon 1 of 12)	183	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
112518	chr19	6495801	6496000	+	0	NA	exon (NM_006087, exon 4 of 4)	exon (NM_006087, exon 4 of 4)	6409	NM_006087	10382		NM_006087	ENSG00000104833	TUBB4A	DYT4|TUBB4|beta-5	tubulin beta 4A class IVa	protein-coding
220392	chr8	100245521	100245880	+	0	NA	Intergenic	AluY|SINE|Alu	56493	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
152598	chr22	21335521	21336580	+	0	NA	Intergenic	L1M4|LINE|L1	-9414	NR_136559	100996335		NR_136559	ENSG00000206142	FAM230H	-	family with sequence similarity 230 member H	ncRNA
26231	chr10	14590971	14591400	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	13216	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
9875	chr1	54312501	54313480	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	76547	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
201622	chr6	149437051	149437350	+	0	NA	Intergenic	L1PB|LINE|L1	36938	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
162045	chr3	46703301	46703500	+	0	NA	intron (NM_147196, intron 1 of 3)	intron (NM_147196, intron 1 of 3)	2008	NM_147196	259236		NM_147196	ENSG00000181585	TMIE	DFNB6	transmembrane inner ear	protein-coding
215783	chr8	2144871	2145680	+	0	NA	3' UTR (NM_003970, exon 37 of 37).2	3' UTR (NM_003970, exon 37 of 37).2	68686	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
160227	chr3	23951801	23952200	+	0	NA	intron (NM_001145425, intron 1 of 7)	intron (NM_001145425, intron 1 of 7)	-5438	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
54963	chr12	96258021	96258950	+	0	NA	intron (NM_001303511, intron 1 of 2)	intron (NM_001303511, intron 1 of 2)	2987	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
49060	chr12	14406451	14406750	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	21319	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
121273	chr19	46708171	46708730	+	0	NA	TTS (NR_036157)	TTS (NR_036157)	904	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
166458	chr3	114217171	114217630	+	0	NA	Intergenic	Intergenic	-17993	NM_001282563	1814		NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
137433	chr2	196845601	196846150	+	0	NA	intron (NM_024989, intron 23 of 26)	intron (NM_024989, intron 23 of 26)	-36520	NM_213608	401027		NM_213608	ENSG00000187944	C2orf66	IIDS6411|UNQ6411	chromosome 2 open reading frame 66	protein-coding
218708	chr8	58595521	58596630	+	0	NA	intron (NM_003580, intron 21 of 30)	intron (NM_003580, intron 21 of 30)	42814	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
88911	chr16	87811951	87812450	+	0	NA	Intergenic	Intergenic	22460	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
235552	chrX	47247651	47247750	+	0	NA	intron (NM_001371072, intron 20 of 20)	intron (NM_001371072, intron 20 of 20)	14691	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
92245	chr17	7917151	7918050	+	0	NA	Intergenic	AluY|SINE|Alu	-1282	NR_152444	284023		NM_001358699	ENSG00000179859	RNF227	LINC02581	ring finger protein 227	protein-coding
30749	chr10	84195851	84196530	+	0	NA	intron (NM_033100, intron 2 of 16)	intron (NM_033100, intron 2 of 16)	1653	NM_033100	92211		NM_033100	ENSG00000148600	CDHR1	CORD15|PCDH21|PRCAD|RP65	cadherin related family member 1	protein-coding
6838	chr1	31031901	31032100	+	0	NA	intron (NM_014676, intron 2 of 21)	intron (NM_014676, intron 2 of 21)	33717	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
177241	chr4	108626071	108626600	+	0	NA	TTS (NM_001319236)	TTS (NM_001319236)	5706	NM_001319234	6164		NM_000995	ENSG00000109475	RPL34	L34|eL34	ribosomal protein L34	protein-coding
182766	chr5	68302071	68302230	+	0	NA	TTS (NM_181504)	TTS (NM_181504)	9573	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
135261	chr2	159737651	159737950	+	0	NA	intron (NM_001282807, intron 1 of 8)	AluJr|SINE|Alu	3836	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
145872	chr20	45939271	45939600	+	0	NA	intron (NM_022104, intron 4 of 16)	L2b|LINE|L2	4752	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
129248	chr2	68367371	68367730	+	0	NA	intron (NM_002664, intron 1 of 8)	intron (NM_002664, intron 1 of 8)	2268	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
160343	chr3	27719321	27719690	+	0	NA	intron (NM_001278182, intron 2 of 5)	intron (NM_001278182, intron 2 of 5)	2818	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
19203	chr1	172428271	172428630	+	0	NA	intron (NM_139240, intron 1 of 6)	L2a|LINE|L2	7765	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
27268	chr10	30024601	30025000	+	0	NA	intron (NM_001350001, intron 4 of 4)	AluYm1|SINE|Alu	34786	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
168173	chr3	140453451	140453980	+	0	NA	intron (NM_022131, intron 6 of 16)	L1MA6|LINE|L1	55074	NR_108084	101927808		NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA
94170	chr17	28397771	28398430	+	0	NA	3' UTR (NM_001242366, exon 4 of 4)	3' UTR (NM_001242366, exon 4 of 4)	8112	NM_001242366	113235		NM_080669	ENSG00000076351	SLC46A1	G21|HCP1|HsPCFT|PCFT|hPCFT	solute carrier family 46 member 1	protein-coding
228079	chr9	96391201	96391700	+	0	NA	intron (NM_153695, intron 4 of 4)	L2a|LINE|L2	-7739	NM_007001	11046		NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	solute carrier family 35 member D2	protein-coding
233240	chr9	137254301	137256200	+	0	NA	promoter-TSS (NM_015456)	promoter-TSS (NM_015456)	-77	NM_015456	25920		NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
217394	chr8	28340951	28341400	+	0	NA	intron (NM_006228, intron 3 of 3)	intron (NM_006228, intron 3 of 3)	2528	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
209734	chr7	87161121	87161580	+	0	NA	intron (NM_021145, intron 3 of 19)	AluSx|SINE|Alu	8796	NM_021145	9988		NM_021145	ENSG00000135164	DMTF1	DMP1|DMTF|MRUL|hDMP1	cyclin D binding myb like transcription factor 1	protein-coding
35563	chr11	1661901	1662280	+	0	NA	Intergenic	Intergenic	-3507	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
40507	chr11	64272771	64272930	+	0	NA	intron (NM_032989, intron 2 of 3)	MIRc|SINE|MIR	2319	NM_001378084	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
116303	chr19	17779051	17779150	+	0	NA	intron (NR_169234, intron 20 of 28)	L2a|LINE|L2	-16038	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
72363	chr15	31350851	31350950	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	24065	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
70806	chr14	103545521	103545850	+	0	NA	Intergenic	Intergenic	16489	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
69709	chr14	98193971	98194130	+	0	NA	Intergenic	Intergenic	-215926	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
225981	chr9	41233751	41233850	+	0	NA	promoter-TSS (NR_039688).2	promoter-TSS (NR_039688).2	35	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
75240	chr15	64885351	64885750	+	0	NA	Intergenic	AluJb|SINE|Alu	-26352	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
176355	chr4	88455451	88455550	+	0	NA	Intergenic	MER61C|LTR|ERV1	-1619	NM_016323	51191		NM_016323	ENSG00000138646	HERC5	CEB1|CEBP1	HECT and RLD domain containing E3 ubiquitin protein ligase 5	protein-coding
36336	chr11	3881801	3882000	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluSx|SINE|Alu	25838	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
211890	chr7	111175971	111176150	+	0	NA	intron (NM_032549, intron 3 of 5)	L1MA3|LINE|L1	84933	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
50063	chr12	44757621	44757880	+	0	NA	intron (NM_001145108, intron 9 of 19)	intron (NM_001145108, intron 9 of 19)	117911	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
80423	chr16	2629751	2630280	+	0	NA	non-coding (NR_015441, exon 4 of 4)	non-coding (NR_015441, exon 4 of 4)	-8967	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
180497	chr5	14221821	14222080	+	0	NA	intron (NR_134469, intron 1 of 56)	Tigger1|DNA|TcMar-Tigger	78608	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
178546	chr4	151101371	151101530	+	0	NA	promoter-TSS (NR_145963)	promoter-TSS (NR_145963)	-607	NR_145963	114655		NR_145963	ENSG00000201264	SNORD73B	RNU73B|U73B	small nucleolar RNA, C/D box U73B	snoRNA
15107	chr1	148625921	148626180	+	0	NA	intron (NM_001364008, intron 2 of 4)	intron (NM_001364008, intron 2 of 4)	-30333	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
138722	chr2	213148521	213149700	+	0	NA	intron (NM_001371277, intron 1 of 6)	(AAACA)n|Simple_repeat|Simple_repeat	1327	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
80375	chr16	2530601	2532500	+	0	NA	promoter-TSS (NM_001048212)	promoter-TSS (NM_001048212)	-142	NM_001048212	752014		NM_001048212	ENSG00000205923	CEMP1	CP-23|CP23	cementum protein 1	protein-coding
215684	chr8	781601	781800	+	0	NA	intron (NM_001346810, intron 1 of 14)	intron (NM_001346810, intron 1 of 14)	43152	NR_134292	401442		NR_134292	ENSG00000282375	LOC401442	-	uncharacterized LOC401442	ncRNA
56361	chr12	113103701	113104400	+	0	NA	exon (NM_001193521, exon 18 of 21)	exon (NM_001193521, exon 18 of 21)	31549	NM_001301202	8437		NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
119488	chr19	40459371	40459530	+	0	NA	intron (NM_000713, intron 1 of 4)	AluSx3|SINE|Alu	6295	NM_000713	645		NM_000713	ENSG00000090013	BLVRB	BVRB|FLR|HEL-S-10|SDR43U1	biliverdin reductase B	protein-coding
148030	chr20	63174621	63175230	+	0	NA	Intergenic	CpG	-3575	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
236036	chrX	55455801	55456050	+	0	NA	Intergenic	Intergenic	3798	NM_014061	28986		NM_014061	ENSG00000187601	MAGEH1	APR-1|APR1|MAGEH	MAGE family member H1	protein-coding
11972	chr1	94237201	94237930	+	0	NA	promoter-TSS (NM_001328666)	promoter-TSS (NM_001328666)	19	NM_004815	9411		NM_004815	ENSG00000137962	ARHGAP29	PARG1	Rho GTPase activating protein 29	protein-coding
77672	chr15	85594221	85594480	+	0	NA	intron (NM_007200, intron 8 of 36)	L2c|LINE|L2	-25600	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
33018	chr10	110724351	110724680	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	80179	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
213870	chr7	142338651	142339080	+	0	NA	Intergenic	Intergenic	-66616	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
4337	chr1	20508951	20509050	+	0	NA	promoter-TSS (NM_024544)	promoter-TSS (NM_024544)	-849	NM_024544	79594		NM_024544	ENSG00000090432	MUL1	C1orf166|GIDE|MAPL|MULAN|RNF218	mitochondrial E3 ubiquitin protein ligase 1	protein-coding
160076	chr3	18743801	18744500	+	0	NA	Intergenic	Intergenic	-298558	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
15309	chr1	149857301	149857500	+	0	NA	intron (NR_168447, intron 1 of 1).2	intron (NR_168447, intron 1 of 1).2	3759	NM_001034077	554313		NM_001034077	ENSG00000270276	H4C15	H4-16|H4/o|H4C1|H4C11|H4C12|H4C13|H4C14|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST2H4B	H4 clustered histone 15	protein-coding
11301	chr1	89277601	89278100	+	0	NA	Intergenic	Intergenic	-4990	NM_052942	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
174125	chr4	36220901	36221880	+	0	NA	intron (NR_146894, intron 2 of 32)	MIR|SINE|MIR	22549	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
213345	chr7	135556451	135556900	+	0	NA	Intergenic	AluSz|SINE|Alu	-1242	NM_001329434	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
60232	chr13	40559501	40559700	+	0	NA	exon (NM_002015, exon 2 of 3)	exon (NM_002015, exon 2 of 3)	-78594	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
158304	chr22	50403471	50404130	+	0	NA	intron (NM_001351648, intron 3 of 22)	intron (NM_001351648, intron 3 of 22)	-3642	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
182330	chr5	59093271	59093880	+	0	NA	intron (NM_001364603, intron 5 of 15)	intron (NM_001364603, intron 5 of 15)	-54099	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
191727	chr6	13697751	13698130	+	0	NA	intron (NM_005493, intron 1 of 13)	intron (NM_005493, intron 1 of 13)	13895	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
25685	chr10	8473301	8473580	+	0	NA	Intergenic	Intergenic	120951	NR_134492	105376398		NR_134492		LOC105376398	-	uncharacterized LOC105376398	ncRNA
60454	chr13	41018941	41020130	+	0	NA	promoter-TSS (NM_172373)	promoter-TSS (NM_172373)	-219	NM_172373	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
159695	chr3	15592251	15593350	+	0	NA	intron (NR_104315, intron 3 of 14)	intron (NR_104315, intron 3 of 14)	-8552	NM_001281723	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
179282	chr4	177051551	177051650	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	175898	NR_149104	105377556		NR_149104	ENSG00000250263	LINC02509	-	long intergenic non-protein coding RNA 2509	ncRNA
119615	chr19	40771121	40771930	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-3635	NM_001202553	8190		NM_006533	ENSG00000261857	MIA	CD-RAP|MIA1	MIA SH3 domain containing	protein-coding
188261	chr5	151083101	151084130	+	0	NA	intron (NM_001252390, intron 1 of 17)	intron (NM_001252390, intron 1 of 17)	-2531	NM_001252385	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
230668	chr9	128711371	128711730	+	0	NA	intron (NM_001317926, intron 6 of 21)	AluYc|SINE|Alu	9047	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
158031	chr22	49924071	49924300	+	0	NA	intron (NR_104295, intron 7 of 9)	intron (NR_104295, intron 7 of 9)	5551	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
179913	chr5	692201	692800	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	852	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
147468	chr20	59076021	59076580	+	0	NA	Intergenic	Intergenic	-33454	NR_037929	100533975		NR_037929		SLMO2-ATP5E	-	SLMO2-ATP5E readthrough	ncRNA
63690	chr14	21090321	21091150	+	0	NA	TTS (NM_018071)	TTS (NM_018071)	7920	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
203459	chr7	449371	449930	+	0	NA	Intergenic	Intergenic	-17849	NR_165236	112267991		NR_165236		LOC112267991	-	uncharacterized LOC112267991	ncRNA
193538	chr6	30602501	30603050	+	0	NA	intron (NM_001376195, intron 18 of 19).6	intron (NM_001376195, intron 18 of 19).6	14468	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
157798	chr22	46776551	46777050	+	0	NA	intron (NM_001284305, intron 1 of 12)	intron (NM_001284305, intron 1 of 12)	2873	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
117718	chr19	29303201	29303730	+	0	NA	intron (NR_040029, intron 9 of 9)	intron (NR_040029, intron 9 of 9)	-90314	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
133457	chr2	119704551	119705030	+	0	NA	intron (NR_148341, intron 14 of 16)	MIR|SINE|MIR	25589	NM_030577	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
85636	chr16	55508921	55509380	+	0	NA	promoter-TSS (NM_017839)	promoter-TSS (NM_017839)	78	NM_017839	54947		NM_017839	ENSG00000087253	LPCAT2	AGPAT11|AYTL1|LPLAT9|LysoPAFAT	lysophosphatidylcholine acyltransferase 2	protein-coding
99299	chr17	49794801	49795000	+	0	NA	intron (NM_001199156, intron 2 of 12)	intron (NM_001199156, intron 2 of 12)	6219	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
24727	chr1	247687571	247687730	+	0	NA	Intergenic	L1HS|LINE|L1	-14609	NM_001005487	441933		NM_001005487	ENSG00000197437	OR13G1	OR1-37	olfactory receptor family 13 subfamily G member 1	protein-coding
168720	chr3	150750871	150751100	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	-12000	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
79196	chr16	335351	335650	+	0	NA	intron (NM_181050, intron 2 of 9)	(ACACAGC)n|Simple_repeat|Simple_repeat	17223	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
123293	chr19	53553601	53555300	+	0	NA	promoter-TSS (NM_001253801)	promoter-TSS (NM_001253801)	-49	NM_001253801	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
235635	chrX	48475121	48477030	+	0	NA	promoter-TSS (NM_012280)	promoter-TSS (NM_012280)	54	NM_001282157	24140		NM_012280	ENSG00000068438	FTSJ1	CDLIV|JM23|MRX44|MRX9|SPB1|TRMT7|XLID9	FtsJ RNA 2'-O-methyltransferase 1	protein-coding
63665	chr14	21044121	21044780	+	0	NA	TTS (NM_032572)	TTS (NM_032572)	2088	NM_032572	84659		NM_032572	ENSG00000165799	RNASE7	RAE1	ribonuclease A family member 7	protein-coding
64815	chr14	35039101	35039730	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-5492	NM_001079519	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
182284	chr5	57246421	57246750	+	0	NA	intron (NM_001203246, intron 6 of 10)	intron (NM_001203246, intron 6 of 10)	32511	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
187566	chr5	142793001	142793200	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	21873	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
176967	chr4	103255751	103255850	+	0	NA	Intergenic	L1PA2|LINE|L1	-57457	NM_001813	1062		NM_001813	ENSG00000138778	CENPE	CENP-E|KIF10|MCPH13|PPP1R61	centromere protein E	protein-coding
3890	chr1	17047301	17048100	+	0	NA	intron (NM_003000, intron 1 of 7)	AluJr|SINE|Alu	6332	NM_003000	6390		NM_003000	ENSG00000117118	SDHB	CWS2|IP|MC2DN4|PGL4|PPGL4|SDH|SDH1|SDH2|SDHIP	succinate dehydrogenase complex iron sulfur subunit B	protein-coding
184519	chr5	101045851	101045950	+	0	NA	Intergenic	Intergenic	-142618	NM_175052	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
177823	chr4	123622751	123622850	+	0	NA	Intergenic	Intergenic	-27191	NR_027105	285419		NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
83030	chr16	22307621	22308330	+	0	NA	intron (NM_018119, intron 3 of 20).2	intron (NM_018119, intron 3 of 20).2	10566	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
198629	chr6	107784301	107784900	+	0	NA	intron (NM_198081, intron 1 of 7)	L1ME4b|LINE|L1	39713	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
42049	chr11	67455851	67456550	+	0	NA	exon (NM_001379183, exon 5 of 9)	exon (NM_001379183, exon 5 of 9)	846	NM_001300895	57010		NM_145200	ENSG00000175544	CABP4	CRSD|CSNB2B	calcium binding protein 4	protein-coding
9827	chr1	54047851	54048550	+	0	NA	intron (NM_001305049, intron 1 of 7)	intron (NM_001305049, intron 1 of 7)	5004	NM_001305043	9528		NM_004872	ENSG00000116209	TMEM59	C1orf8|DCF1|HSPC001|PRO195|UNQ169	transmembrane protein 59	protein-coding
185722	chr5	132063351	132064080	+	0	NA	TTS (NM_000588)	TTS (NM_000588)	3060	NM_000588	3562		NM_000588	ENSG00000164399	IL3	IL-3|MCGF|MULTI-CSF	interleukin 3	protein-coding
65096	chr14	40954471	40954850	+	0	NA	promoter-TSS (NR_109757)	promoter-TSS (NR_109757)	-51	NR_109758	644919		NR_109757		LINC02315	-	long intergenic non-protein coding RNA 2315	ncRNA
114799	chr19	13787451	13788150	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-7643	NM_001367834	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
154719	chr22	36448671	36449380	+	0	NA	Intergenic	Intergenic	32615	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
24915	chr10	1061551	1062230	+	0	NA	intron (NM_014023, intron 1 of 13)	Tigger4b|DNA|TcMar-Tigger	-5186	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
173642	chr4	13530751	13531050	+	0	NA	intron (NR_034054, intron 1 of 3)	intron (NR_034054, intron 1 of 3)	517	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
22478	chr1	221717501	221718550	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	18875	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
79358	chr16	627351	628300	+	0	NA	3' UTR (NM_021168, exon 6 of 6)	3' UTR (NM_021168, exon 6 of 6)	-3160	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
147496	chr20	59164741	59165300	+	0	NA	intron (NM_178457, intron 1 of 5)	intron (NM_178457, intron 1 of 5)	1199	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
230940	chr9	129412051	129412150	+	0	NA	Intergenic	Intergenic	75177	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
138895	chr2	217886701	217887150	+	0	NA	intron (NM_022648, intron 10 of 32)	intron (NM_022648, intron 10 of 32)	13703	NR_106867	102465485		NR_106867	ENSG00000275458	MIR6809	hsa-mir-6809	microRNA 6809	ncRNA
224428	chr9	15294651	15295030	+	0	NA	intron (NM_152574, intron 1 of 19)	intron (NM_152574, intron 1 of 19)	12520	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
77225	chr15	81161201	81161400	+	0	NA	Intergenic	LTR16C|LTR|ERVL	27030	NM_173528	161502		NM_173528	ENSG00000156206	CFAP161	C15orf26	cilia and flagella associated protein 161	protein-coding
157766	chr22	46734271	46734430	+	0	NA	intron (NM_022766, intron 1 of 12)	L1ME3A|LINE|L1	3902	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
164041	chr3	53299591	53300900	+	0	NA	intron (NM_001290204, intron 5 of 8)	intron (NM_001290204, intron 5 of 8)	32882	NR_145715	109617024		NR_145715	ENSG00000207109	SNORD38C	-	small nucleolar RNA, C/D box 38C	snoRNA
141287	chr2	240198571	240198930	+	0	NA	Intergenic	(TCCATCACTG)n|Simple_repeat|Simple_repeat	-58092	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
5373	chr1	25415721	25416450	+	0	NA	intron (NM_138618, intron 1 of 8)	intron (NM_138618, intron 1 of 8)	4829	NM_138618	6006		NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHCe(152N)|RHE|RHIXB|RHNA|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII|SLC42A4	Rh blood group CcEe antigens	protein-coding
178579	chr4	151142771	151143330	+	0	NA	intron (NM_001378121, intron 13 of 20)	AluJb|SINE|Alu	32502	NM_001128924	152503		NM_001009555	ENSG00000109686	SH3D19	EBP|EVE1|Eve-1|Kryn|SH3P19	SH3 domain containing 19	protein-coding
50470	chr12	47766601	47767680	+	0	NA	Intergenic	Intergenic	-6098	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
37415	chr11	17279751	17280150	+	0	NA	intron (NM_001352672, intron 1 of 14)	AluJo|SINE|Alu	2980	NM_001352672	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
9525	chr1	51445571	51445930	+	0	NA	intron (NM_001981, intron 10 of 24)	MIRb|SINE|MIR	-23655	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
201400	chr6	145841351	145841850	+	0	NA	intron (NR_038246, intron 2 of 2)	intron (NR_038246, intron 2 of 2)	26724	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
155522	chr22	38694171	38694550	+	0	NA	intron (NM_014876, intron 2 of 4)	intron (NM_014876, intron 2 of 4)	6583	NM_001360236	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
28002	chr10	43144971	43145130	+	0	NA	intron (NR_135077, intron 1 of 8)	L1ME1|LINE|L1	6605	NM_018590	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
76376	chr15	74604221	74604680	+	0	NA	Intergenic	Intergenic	-3922	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
29050	chr10	67790901	67791300	+	0	NA	Intergenic	Intergenic	47079	NM_201262	56521		NM_021800	ENSG00000108176	DNAJC12	HPANBH4|JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
61555	chr13	60710151	60710260	+	0	NA	Intergenic	L1PA3|LINE|L1	37250	NR_047003	101926930		NR_047003		LINC00378	-	long intergenic non-protein coding RNA 378	ncRNA
187598	chr5	142922021	142922700	+	0	NA	intron (NR_146198, intron 10 of 22)	intron (NR_146198, intron 10 of 22)	-53450	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
216535	chr8	21043851	21043950	+	0	NA	Intergenic	Intergenic	69914	NR_033894	286114		NR_033894	ENSG00000253199	LINC02153	-	long intergenic non-protein coding RNA 2153	ncRNA
96757	chr17	41705801	41706000	+	0	NA	Intergenic	Intergenic	-6431	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
70281	chr14	101739571	101740000	+	0	NA	Intergenic	Intergenic	9348	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
66387	chr14	61491351	61491650	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	78694	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
86805	chr16	67835971	67836430	+	0	NA	intron (NM_025082, intron 1 of 15)	AluSx3|SINE|Alu	-6120	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
86491	chr16	67016601	67017100	+	0	NA	Intergenic	Intergenic	-12299	NM_001755	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
148217	chr20	63579471	63579630	+	0	NA	Intergenic	MER21B|LTR|ERVL	-5311	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
58439	chr12	131962171	131962530	+	0	NA	intron (NM_015409, intron 2 of 52)	intron (NM_015409, intron 2 of 52)	12408	NM_015409	57634		NM_015409	ENSG00000183495	EP400	CAGH32|P400|TNRC12	E1A binding protein p400	protein-coding
104975	chr17	81984571	81985330	+	0	NA	intron (NR_045351, intron 2 of 14)	(AC)n|Simple_repeat|Simple_repeat	7321	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
228046	chr9	96018051	96018750	+	0	NA	TTS (NM_020207)	TTS (NM_020207)	3411	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
150442	chr21	42456371	42457130	+	0	NA	Intergenic	Intergenic	39474	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
71943	chr15	23043901	23044750	+	0	NA	Intergenic	Intergenic	-4652	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
49325	chr12	21678871	21679500	+	0	NA	Intergenic	Intergenic	-21330	NM_001315537	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
20015	chr1	185298771	185298930	+	0	NA	intron (NM_006469, intron 14 of 14)	FLAM_C|SINE|Alu	18393	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
43793	chr11	86292971	86294050	+	0	NA	Intergenic	Intergenic	-8730	NM_016401	51501		NM_016401	ENSG00000149196	HIKESHI	C11orf73|HLD13|HSPC138|HSPC179|L7RN6|OPI10	heat shock protein nuclear import factor hikeshi	protein-coding
47258	chr12	1473251	1474030	+	0	NA	intron (NM_178039, intron 17 of 17)	AluJo|SINE|Alu	-26851	NR_028415	100292680		NR_028415	ENSG00000249628	LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
205131	chr7	7103321	7104200	+	0	NA	Intergenic	AluSx|SINE|Alu	-6974	NR_034022	100131257		NR_034022		LOC100131257	-	zinc finger protein 655 pseudogene	pseudo
31780	chr10	98168121	98168600	+	0	NA	intron (NM_001256621, intron 3 of 7)	intron (NM_001256621, intron 3 of 7)	33703	NM_001256619	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
98006	chr17	45314351	45315300	+	0	NA	intron (NM_003954, intron 1 of 15)	intron (NM_003954, intron 1 of 15)	2195	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
49473	chr12	25193701	25193900	+	0	NA	intron (NM_001352063, intron 1 of 13)	intron (NM_001352063, intron 1 of 13)	1360	NR_147909	55259		NM_018272	ENSG00000118307	DNAI7	CASC1|CFAP94|LAS1|PPP1R54	dynein axonemal intermediate chain 7	protein-coding
17643	chr1	157140251	157140630	+	0	NA	Intergenic	Intergenic	-1849	NM_005240	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
95023	chr17	32458351	32458650	+	0	NA	intron (NM_001270482, intron 3 of 12)	intron (NM_001270482, intron 3 of 12)	13990	NM_001270482	5717		NM_002815	ENSG00000108671	PSMD11	Rpn6|S9|p44.5	proteasome 26S subunit, non-ATPase 11	protein-coding
190453	chr5	179971221	179971480	+	0	NA	intron (NM_001280801, intron 5 of 7)	intron (NM_001280801, intron 5 of 7)	44047	NR_029885	442908		NR_029885	ENSG00000198995	MIR340	MIRN340|hsa-mir-340|mir-340	microRNA 340	ncRNA
38983	chr11	47587371	47587530	+	0	NA	intron (NM_001367967, intron 1 of 1)	intron (NM_001367967, intron 1 of 1)	772	NM_001164379	399888		NM_001164379	ENSG00000196666	FAM180B	-	family with sequence similarity 180 member B	protein-coding
108594	chr18	75218171	75218930	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	7753	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
396	chr1	1054971	1055750	+	0	NA	3' UTR (NM_001364727, exon 36 of 36)	3' UTR (NM_001364727, exon 36 of 36)	-4374	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
163927	chr3	52689121	52689380	+	0	NA	promoter-TSS (NR_003047)	promoter-TSS (NR_003047)	10	NR_003047	692089		NR_003047	ENSG00000212493	SNORD19	HBII-108	small nucleolar RNA, C/D box 19	snoRNA
78740	chr15	98853201	98853730	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	69039	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
231593	chr9	131542801	131543380	+	0	NA	Intergenic	AluYe6|SINE|Alu	-2433	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
196348	chr6	43185201	43186180	+	0	NA	intron (NM_015089, intron 3 of 40)	intron (NM_015089, intron 3 of 40)	3494	NM_015089	23113		NM_015089	ENSG00000112659	CUL9	H7AP1|PARC	cullin 9	protein-coding
151007	chr21	44427801	44429000	+	0	NA	intron (NM_001320350, intron 28 of 32)	intron (NM_001320350, intron 28 of 32)	-2837	NR_109964	101928607		NR_109964		TRPM2-AS	TRPM2-AS1	TRPM2 antisense RNA	ncRNA
230696	chr9	128734321	128734580	+	0	NA	intron (NM_001375958, intron 14 of 15)	AluSz|SINE|Alu	9988	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
19726	chr1	181107421	181108050	+	0	NA	Intergenic	Intergenic	19035	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
147837	chr20	62776651	62778200	+	0	NA	promoter-TSS (NR_046225)	promoter-TSS (NR_046225)	-569	NR_046225	100652730		NR_046224	ENSG00000228705	LINC00659	-	long intergenic non-protein coding RNA 659	ncRNA
154687	chr22	36376301	36376530	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	11552	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
130190	chr2	84424271	84424430	+	0	NA	intron (NM_003849, intron 8 of 8)	intron (NM_003849, intron 8 of 8)	34930	NM_003849	8802		NM_003849	ENSG00000163541	SUCLG1	GALPHA|MTDPS9|SUCLA1	succinate-CoA ligase GDP/ADP-forming subunit alpha	protein-coding
7595	chr1	35192801	35195030	+	0	NA	promoter-TSS (NM_005066)	promoter-TSS (NM_005066)	-770	NM_005066	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
227225	chr9	88923421	88924080	+	0	NA	Intergenic	Intergenic	-67113	NM_001001938	1903		NM_005226	ENSG00000213694	S1PR3	C9orf108|C9orf47|EDG-3|EDG3|LPB3|S1P3|bA791O21.3	sphingosine-1-phosphate receptor 3	protein-coding
172448	chr4	1979801	1980400	+	0	NA	3' UTR (NM_133331, exon 23 of 23)	3' UTR (NM_133331, exon 23 of 23)	5464	NR_003004	677770		NR_003004	ENSG00000249784	SCARNA22	ACA11	small Cajal body-specific RNA 22	ncRNA
15137	chr1	148788701	148789750	+	0	NA	intron (NR_158171, intron 1 of 4).2	intron (NR_158171, intron 1 of 4).2	2744	NR_158171	100996716		NR_158171		SEC22B2P	CH17-189H20.1|SEC22B2	SEC22 homolog B2, pseudogene	pseudo
71390	chr14	105517401	105517600	+	0	NA	Intergenic	LOR1b|LTR|ERV1	-9083	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
89844	chr16	89591421	89592080	+	0	NA	intron (NM_153636, intron 13 of 14)	AluSx1|SINE|Alu	15992	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
97925	chr17	45151051	45151380	+	0	NA	3' UTR (NM_006460, exon 1 of 1)	3' UTR (NM_006460, exon 1 of 1)	2740	NM_006460	10614		NM_006460	ENSG00000186834	HEXIM1	CLP1|EDG1|HIS1|MAQ1	HEXIM P-TEFb complex subunit 1	protein-coding
158837	chr3	9795321	9795580	+	0	NA	intron (NM_001198780, intron 1 of 5)	L2c|LINE|L2	2368	NM_001198780	10093		NM_005718	ENSG00000241553	ARPC4	ARC20|DEVLO|P20-ARC	actin related protein 2/3 complex subunit 4	protein-coding
69568	chr14	96852821	96853100	+	0	NA	intron (NM_003384, intron 6 of 12)	intron (NM_003384, intron 6 of 12)	55578	NM_003384	7443		NM_003384	ENSG00000100749	VRK1	HMNR10|PCH1|PCH1A	VRK serine/threonine kinase 1	protein-coding
36306	chr11	3845601	3845980	+	0	NA	Intergenic	AluJo|SINE|Alu	-4831	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
53056	chr12	57629601	57630200	+	0	NA	exon (NM_001276469, exon 6 of 6)	exon (NM_001276469, exon 6 of 6)	2779	NM_001276468	2583		NM_001478	ENSG00000135454	B4GALNT1	GALGT|GALNACT|GalNAc-T|SPG26	beta-1,4-N-acetyl-galactosaminyltransferase 1	protein-coding
176055	chr4	82424401	82424850	+	0	NA	non-coding (NR_003249, exon 9 of 9)	non-coding (NR_003249, exon 9 of 9)	5600	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
129512	chr2	69642711	69644760	+	0	NA	promoter-TSS (NM_014911)	promoter-TSS (NM_014911)	3	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
58521	chr12	132194001	132194630	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	-4620	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
55650	chr12	107316471	107316800	+	0	NA	Intergenic	L1MA9|LINE|L1	-1799	NM_001347943	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
69739	chr14	98912671	98913030	+	0	NA	Intergenic	Intergenic	201237	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
70836	chr14	103638551	103638850	+	0	NA	intron (NM_001130107, intron 1 of 15)	AluSz6|SINE|Alu	9512	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
116003	chr19	17117451	17118450	+	0	NA	intron (NM_004145, intron 2 of 39)	AluSx1|SINE|Alu	25715	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
194451	chr6	33172501	33173380	+	0	NA	intron (NM_080680, intron 38 of 65).6	intron (NM_080680, intron 38 of 65).6	19527	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
40537	chr11	64303851	64307450	+	0	NA	promoter-TSS (NM_001282450)	promoter-TSS (NM_001282450)	122	NM_001282451	2101		NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen related receptor alpha	protein-coding
209701	chr7	84091471	84091630	+	0	NA	intron (NM_006080, intron 4 of 16)	intron (NM_006080, intron 4 of 16)	103239	NM_006080	10371		NM_006080	ENSG00000075213	SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	semaphorin 3A	protein-coding
238642	chrX	153974501	153974980	+	0	NA	intron (NM_003492, intron 1 of 1)	intron (NM_003492, intron 1 of 1)	1986	NM_003492	8269		NM_003492	ENSG00000177854	TMEM187	CXorf12|DXS9878E|ITBA1	transmembrane protein 187	protein-coding
207868	chr7	50370451	50370850	+	0	NA	TTS (NM_001291847)	TTS (NM_001291847)	51602	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
217094	chr8	24387171	24387780	+	0	NA	intron (NR_125808, intron 2 of 5)	HERVK22-int|LTR|ERVK	3190	NR_156422	27299		NM_014479	ENSG00000134028	ADAMDEC1	M12.219	ADAM like decysin 1	protein-coding
57742	chr12	122943571	122943930	+	0	NA	intron (NM_019624, intron 6 of 10)	AluSp|SINE|Alu	22713	NM_001243014	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
21098	chr1	203341771	203341950	+	0	NA	non-coding (NR_103757, exon 2 of 2)	non-coding (NR_103757, exon 2 of 2)	9262	NR_103757	2331		NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding
90981	chr17	2705151	2705650	+	0	NA	intron (NM_001366662, intron 1 of 25)	intron (NM_001366662, intron 1 of 25)	6364	NM_001366661	23277		NM_015229	ENSG00000132361	CLUH	CLU1	clustered mitochondria homolog	protein-coding
20796	chr1	201119051	201119600	+	0	NA	Intergenic	Intergenic	-3953	NM_001270601	647219		NM_001270601	ENSG00000232237	ASCL5	ASH-5|AmeloD|bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding
236517	chrX	72048951	72049350	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	4741	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
210888	chr7	101169371	101170300	+	0	NA	TTS (NM_198571)	TTS (NM_198571)	-4266	NM_003378	7425		NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
106519	chr18	21084751	21085250	+	0	NA	intron (NM_005406, intron 1 of 32)	L1MB4|LINE|L1	26813	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
71365	chr14	105486701	105488680	+	0	NA	intron (NM_001311, intron 2 of 5)	CpG-7818	804	NM_001311	1396		NM_001311	ENSG00000213145	CRIP1	CRHP|CRIP|CRP-1|CRP1	cysteine rich protein 1	protein-coding
120999	chr19	45770001	45771350	+	0	NA	intron (NM_001288766, intron 12 of 12)	CpG	-1423	NM_175875	147912		NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
143859	chr20	32539501	32541030	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	30306	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
84440	chr16	30399171	30399330	+	0	NA	3' UTR (NM_152652, exon 2 of 2)	3' UTR (NM_152652, exon 2 of 2)	3830	NM_001324494	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
19233	chr1	172627201	172628130	+	0	NA	Intergenic	Intergenic	-31343	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
228379	chr9	99112651	99114230	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	8327	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233579	chrX	306751	306850	+	0	NA	intron (NM_012227, intron 9 of 9)	intron (NM_012227, intron 9 of 9)	12019	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
103577	chr17	78693371	78694080	+	0	NA	intron (NM_001292019, intron 9 of 12)	intron (NM_001292019, intron 9 of 12)	23307	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
112242	chr19	5722821	5723500	+	0	NA	intron (NM_152784, intron 1 of 21)	AluY|SINE|Alu	2523	NM_152784	257062		NM_152784	ENSG00000174898	CATSPERD	TMEM146	cation channel sperm associated auxiliary subunit delta	protein-coding
220149	chr8	94944571	94944730	+	0	NA	intron (NM_033285, intron 1 of 3)	intron (NM_033285, intron 1 of 3)	4728	NM_001135733	94241		NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
160043	chr3	18438301	18439450	+	0	NA	promoter-TSS (NM_001131010)	promoter-TSS (NM_001131010)	-139	NM_001131010	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
65927	chr14	55335821	55336500	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	64006	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
111486	chr19	3960921	3961650	+	0	NA	TTS (NR_030367)	TTS (NR_030367)	227	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
205	chr1	731421	732080	+	0	NA	intron (NR_168328, intron 18 of 19)	AluJr|SINE|Alu	-45096	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
157217	chr22	43188801	43189600	+	0	NA	Intergenic	L2b|LINE|L2	-2066	NM_015140	23170		NM_015140	ENSG00000100304	TTLL12	dJ526I14.2	tubulin tyrosine ligase like 12	protein-coding
236491	chrX	71696771	71697600	+	0	NA	promoter-TSS (NR_034004)	promoter-TSS (NR_034004)	-11	NR_034005	441501		NR_034005		LINC00891	-	long intergenic non-protein coding RNA 891	ncRNA
117297	chr19	19490201	19491030	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	24933	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
175906	chr4	80179601	80180100	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-5420	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
162870	chr3	49367421	49367680	+	0	NA	intron (NM_001313947, intron 2 of 3)	AluSx|SINE|Alu	-8950	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
146992	chr20	53386701	53387100	+	0	NA	intron (NM_173485, intron 2 of 2)	intron (NM_173485, intron 2 of 2)	-165870	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
26201	chr10	14556101	14557080	+	0	NA	promoter-TSS (NM_001320738)	promoter-TSS (NM_001320738)	-410	NM_001320738	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
91243	chr17	3953301	3953700	+	0	NA	intron (NM_174953, intron 2 of 22)	intron (NM_174953, intron 2 of 22)	10937	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
162345	chr3	47799571	47800250	+	0	NA	Intergenic	AluJb|SINE|Alu	-2999	NM_014966	22907		NM_014966	ENSG00000132153	DHX30	DDX30|NEDMIAL|RETCOR	DExH-box helicase 30	protein-coding
57308	chr12	121666501	121668030	+	0	NA	intron (NM_173855, intron 1 of 5)	AluSz6|SINE|Alu	2389	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
148766	chr21	8195371	8196300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1785	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
220092	chr8	94357071	94357450	+	0	NA	Intergenic	Intergenic	79684	NM_001205263	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
158496	chr3	2238721	2238800	+	0	NA	promoter-TSS (NM_001206955)	promoter-TSS (NM_001206955)	-69	NM_001206955	152330		NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
118416	chr19	35773771	35774130	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1614	NM_001172630	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
164525	chr3	63911551	63913700	+	0	NA	promoter-TSS (NR_148359)	promoter-TSS (NR_148359)	513	NM_001377406	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
236760	chrX	78886521	78886800	+	0	NA	Intergenic	Intergenic	14589	NR_036258	100422932		NR_036258	ENSG00000283622	MIR4328	-	microRNA 4328	ncRNA
175656	chr4	76895501	76895700	+	0	NA	exon (NM_001029870, exon 1 of 1)	exon (NM_001029870, exon 1 of 1)	2544	NM_001029870	345079		NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
68654	chr14	89973271	89973500	+	0	NA	intron (NM_001008744, intron 5 of 15)	intron (NM_001008744, intron 5 of 15)	17458	NM_001008744	55775		NM_018319	ENSG00000042088	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
94081	chr17	27566471	27566630	+	0	NA	intron (NM_001367810, intron 2 of 18)	intron (NM_001367810, intron 2 of 18)	-64638	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
101742	chr17	69526071	69526250	+	0	NA	intron (NM_002758, intron 9 of 11)	intron (NM_002758, intron 9 of 11)	23898	NM_001330450	5608		NM_002758	ENSG00000108984	MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
90792	chr17	2123821	2124200	+	0	NA	intron (NM_001256827, intron 6 of 11)	intron (NM_001256827, intron 6 of 11)	-35249	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
82524	chr16	18135051	18135150	+	0	NA	Intergenic	Intergenic	197562	NM_001282507	101059938		NM_001282507	ENSG00000214967	NPIPA7	NPIPA8	nuclear pore complex interacting protein family member A7	protein-coding
215789	chr8	2181751	2182050	+	0	NA	Intergenic	CpG	105311	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
170747	chr3	188358001	188358330	+	0	NA	intron (NM_001167671, intron 3 of 11)	MIR|SINE|MIR	145269	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
12579	chr1	108876701	108877900	+	0	NA	intron (NM_001321038, intron 1 of 14)	CpG	315	NM_001321038	29899		NM_013296	ENSG00000121957	GPSM2	CMCS|DFNB82|LGN|PINS	G protein signaling modulator 2	protein-coding
222145	chr8	132614001	132614450	+	0	NA	intron (NM_001321966, intron 7 of 10)	L2a|LINE|L2	-52746	NR_026684	93668		NR_026684	ENSG00000253521	HPYR1	HPRG1|LINC00027|NCRNA00027	Helicobacter pylori responsive 1	ncRNA
207437	chr7	44562551	44562800	+	0	NA	Intergenic	AluSx1|SINE|Alu	11863	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
137439	chr2	196925671	196927300	+	0	NA	exon (NM_024989, exon 1 of 27)	exon (NM_024989, exon 1 of 27)	222	NM_001321099	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
121279	chr19	46713371	46714820	+	0	NA	5' UTR (NM_001079882, exon 1 of 17)	5' UTR (NM_001079882, exon 1 of 17)	225	NM_001079882	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
185118	chr5	119283571	119283730	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	14891	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
65715	chr14	52894871	52895230	+	0	NA	intron (NM_001134999, intron 3 of 15)	L1ME1|LINE|L1	56000	NM_006832	10979		NM_006832	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	FERM domain containing kindlin 2	protein-coding
36937	chr11	10899601	10900400	+	0	NA	Intergenic	Intergenic	41783	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
37602	chr11	19938121	19938480	+	0	NA	intron (NM_145117, intron 7 of 37)	intron (NM_145117, intron 7 of 37)	-84256	NM_001111019	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
160349	chr3	27728171	27729050	+	0	NA	Intergenic	Intergenic	-5895	NM_001278183	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
167721	chr3	131019101	131019300	+	0	NA	intron (NM_001288950, intron 3 of 6)	intron (NM_001288950, intron 3 of 6)	7625	NM_014065	28990		NM_014065	ENSG00000034533	ASTE1	HT001	asteroid homolog 1	protein-coding
226632	chr9	73200001	73200200	+	0	NA	Intergenic	Intergenic	48235	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
65674	chr14	52678251	52679150	+	0	NA	intron (NM_001382474, intron 1 of 13)	intron (NM_001382474, intron 1 of 13)	16858	NM_001382476	30001		NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
59085	chr13	21061011	21062200	+	0	NA	promoter-TSS (NM_014572)	promoter-TSS (NM_014572)	-19	NM_014572	26524		NM_014572	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
25827	chr10	11208821	11210830	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	44795	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
164847	chr3	71041271	71041650	+	0	NA	exon (NM_001244815, exon 6 of 16)	exon (NM_001244815, exon 6 of 16)	23464	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
102008	chr17	74778671	74778830	+	0	NA	intron (NM_017728, intron 2 of 9)	AluSq2|SINE|Alu	2251	NM_017728	54868		NM_017728	ENSG00000109066	TMEM104	SLC38A12	transmembrane protein 104	protein-coding
181103	chr5	36943451	36943750	+	0	NA	intron (NM_133433, intron 1 of 46)	intron (NM_133433, intron 1 of 46)	66831	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
148798	chr21	8237971	8239550	+	0	NA	intron (NR_003287, intron 1 of 2)	CpG	-10745	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
212927	chr7	130921371	130922000	+	0	NA	non-coding (NR_109780, exon 4 of 4)	non-coding (NR_109780, exon 4 of 4)	8221	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
151665	chr22	17087421	17088680	+	0	NA	intron (NM_014339, intron 1 of 12)	MIRb|SINE|MIR	3050	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
158468	chr22	50686021	50686480	+	0	NA	intron (NM_001372044, intron 11 of 23)	intron (NM_001372044, intron 11 of 23)	13427	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
209639	chr7	77753001	77753400	+	0	NA	intron (NM_198467, intron 3 of 7)	L1ME3A|LINE|L1	45234	NM_032936	85025		NM_032936	ENSG00000135211	TMEM60	C7orf35|DC32	transmembrane protein 60	protein-coding
117122	chr19	19213471	19213730	+	0	NA	intron (NM_004386, intron 1 of 14)	intron (NM_004386, intron 1 of 14)	1642	NM_004386	1463		NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
139637	chr2	226030971	226031330	+	0	NA	Intergenic	Intergenic	-111644	NR_046102	646736		NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
46218	chr11	123740901	123742380	+	0	NA	promoter-TSS (NM_001301779)	promoter-TSS (NM_001301779)	20	NM_001301779	7753		NM_003455	ENSG00000166261	ZNF202	ZKSCAN10|ZSCAN42	zinc finger protein 202	protein-coding
22344	chr1	214551501	214551700	+	0	NA	promoter-TSS (NM_005401)	promoter-TSS (NM_005401)	2	NM_005401	5784		NM_005401	ENSG00000152104	PTPN14	CATLPH|PEZ|PTP36|PTPD2	protein tyrosine phosphatase non-receptor type 14	protein-coding
144265	chr20	34557721	34559300	+	0	NA	promoter-TSS (NM_032514)	promoter-TSS (NM_032514)	-208	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
68333	chr14	77594771	77594930	+	0	NA	intron (NM_004863, intron 2 of 11)	intron (NM_004863, intron 2 of 11)	21787	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
58670	chr12	132535601	132536430	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	30609	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
147304	chr20	57681101	57681500	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	9386	NM_001255976	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
147031	chr20	53608201	53609100	+	0	NA	intron (NR_134576, intron 1 of 2)	intron (NR_134576, intron 1 of 2)	296	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
79999	chr16	1884201	1884400	+	0	NA	promoter-TSS (NR_033914)	promoter-TSS (NR_033914)	-69	NR_033914	64735		NR_033914	ENSG00000281219	LINC00254	C16orf32|NCRNA00254	long intergenic non-protein coding RNA 254	ncRNA
151801	chr22	18200371	18200730	+	0	NA	intron (NR_136570, intron 1 of 11)	intron (NR_136570, intron 1 of 11)	5359	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
41954	chr11	67319201	67319400	+	0	NA	intron (NR_024469, intron 1 of 3)	intron (NR_024469, intron 1 of 3)	1461	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
97717	chr17	44351971	44352280	+	0	NA	exon (NM_002087, exon 11 of 13)	exon (NM_002087, exon 11 of 13)	6823	NM_002087	2896		NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin precursor	protein-coding
187260	chr5	141492101	141492930	+	0	NA	TTS (NM_032407)	TTS (NM_032407)	3274	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
228073	chr9	96241251	96241730	+	0	NA	intron (NM_000197, intron 9 of 10)	intron (NM_000197, intron 9 of 10)	-4973	NR_146524	105376162		NR_146524	ENSG00000232283	HSD17B3-AS1	-	HSD17B3 antisense RNA 1	ncRNA
7897	chr1	36606021	36606300	+	0	NA	Intergenic	Intergenic	-122846	NM_156039	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
36455	chr11	5694401	5694950	+	0	NA	intron (NM_006074, intron 1 of 7)	MIRb|SINE|MIR	4885	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
120124	chr19	42196601	42196950	+	0	NA	Intergenic	CpG	20902	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
168179	chr3	140863701	140863900	+	0	NA	Intergenic	Intergenic	-78036	NM_018155	55186		NM_018155	ENSG00000114120	SLC25A36	HHF8|PNC2	solute carrier family 25 member 36	protein-coding
186975	chr5	139689771	139690450	+	0	NA	Intergenic	Intergenic	14667	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
141800	chr20	291471	291700	+	0	NA	promoter-TSS (NM_080571)	promoter-TSS (NM_080571)	-807	NM_080571	140680		NM_080571	ENSG00000196476	C20orf96	dJ1103G7.2	chromosome 20 open reading frame 96	protein-coding
50639	chr12	48716071	48718030	+	0	NA	promoter-TSS (NM_001277842)	promoter-TSS (NM_001277842)	-343	NM_001277842	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
237108	chrX	104183871	104184230	+	0	NA	intron (NM_207318, intron 2 of 5)	intron (NM_207318, intron 2 of 5)	17597	NM_207318	139231		NM_207318	ENSG00000123575	FAM199X	CXorf39	family with sequence similarity 199, X-linked	protein-coding
157030	chr22	42558901	42559530	+	0	NA	intron (NR_104300, intron 7 of 10)	AluJo|SINE|Alu	5259	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
122995	chr19	50906301	50906630	+	0	NA	non-coding (NR_126566, exon 5 of 5)	non-coding (NR_126566, exon 5 of 5)	4273	NM_001302961	9622		NM_004917	ENSG00000167749	KLK4	AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein	kallikrein related peptidase 4	protein-coding
116309	chr19	17787871	17788600	+	0	NA	intron (NR_169234, intron 28 of 28)	intron (NR_169234, intron 28 of 28)	-6903	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
103320	chr17	77928871	77929030	+	0	NA	Intergenic	Intergenic	-44863	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
42221	chr11	68041551	68041800	+	0	NA	intron (NM_001351059, intron 2 of 18)	intron (NM_001351059, intron 2 of 18)	-1305	NM_006053	10312		NM_006019	ENSG00000110719	TCIRG1	ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3	T cell immune regulator 1, ATPase H+ transporting V0 subunit a3	protein-coding
207896	chr7	50415901	50416300	+	0	NA	Intergenic	Intergenic	34250	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
215617	chr7	159199371	159199530	+	0	NA	Intergenic	Charlie10|DNA|hAT-Charlie	-54493	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
192455	chr6	24909421	24910050	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	999	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
146618	chr20	50165751	50166330	+	0	NA	Intergenic	Intergenic	-6530	NR_109943	101927541		NR_109943	ENSG00000231742	LINC01273	-	long intergenic non-protein coding RNA 1273	ncRNA
87165	chr16	69325821	69326450	+	0	NA	TTS (NM_001379264)	TTS (NM_001379264)	4453	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
138118	chr2	202288101	202288300	+	0	NA	intron (NM_015934, intron 6 of 14)	intron (NM_015934, intron 6 of 14)	-3117	NR_003694	100113392		NR_003694	ENSG00000271852	SNORD11B	-	small nucleolar RNA, C/D box 11B	snoRNA
196048	chr6	42075351	42075800	+	0	NA	intron (NM_138572, intron 7 of 8)	intron (NM_138572, intron 7 of 8)	25051	NM_138572	129685		NM_138572	ENSG00000137413	TAF8	II|NEDMLHB|TAF|TAF(II)43|TAFII-43|TAFII43|TBN	TATA-box binding protein associated factor 8	protein-coding
151307	chr21	45544371	45544980	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	-2235	NM_001205206	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
198724	chr6	108257301	108257730	+	0	NA	intron (NM_001300929, intron 1 of 3)	AluJr|SINE|Alu	3525	NM_001300928	8724		NM_003795	ENSG00000112335	SNX3	Grd19|MCOPS8|SDP3	sorting nexin 3	protein-coding
179919	chr5	711221	711480	+	0	NA	non-coding (NR_147096, exon 14 of 14)	non-coding (NR_147096, exon 14 of 14)	-17998	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
10350	chr1	64928071	64929780	+	0	NA	intron (NM_001321852, intron 1 of 24)	Charlie15b|DNA|hAT-Charlie	37624	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
26886	chr10	26335101	26335750	+	0	NA	Intergenic	L1M3f|LINE|L1	-102916	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
87190	chr16	69387751	69388050	+	0	NA	Intergenic	AluSz|SINE|Alu	-1893	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
72945	chr15	40447801	40448200	+	0	NA	intron (NR_125372, intron 1 of 4)	AluSc|SINE|Alu	7047	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
98036	chr17	45425851	45427130	+	0	NA	promoter-TSS (NM_199282).2	promoter-TSS (NM_199282).2	-857	NM_001385394	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
131188	chr2	94986471	94986630	+	0	NA	Intergenic	L1MC5|LINE|L1	-39105	NM_022440	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
146485	chr20	49814721	49815380	+	0	NA	non-coding (NR_048538, exon 2 of 14)	non-coding (NR_048538, exon 2 of 14)	2222	NR_048538	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
205104	chr7	6828271	6828430	+	0	NA	Intergenic	Intergenic	-2075	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
154136	chr22	31230871	31231500	+	0	NA	intron (NM_005569, intron 2 of 15)	MIRc|SINE|MIR	-17199	NM_016733	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
170592	chr3	186909021	186909900	+	0	NA	Intergenic	L1PA7|LINE|L1	-21066	NM_173217	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
120670	chr19	45099751	45100050	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	6721	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
61864	chr13	77017221	77017480	+	0	NA	intron (NM_012158, intron 3 of 4)	intron (NM_012158, intron 3 of 4)	9809	NM_012158	26224		NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A|IDDSFAS	F-box and leucine rich repeat protein 3	protein-coding
76624	chr15	75532451	75532780	+	0	NA	intron (NM_002833, intron 1 of 12)	intron (NM_002833, intron 1 of 12)	46700	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
220176	chr8	95154471	95154730	+	0	NA	exon (NM_024613, exon 2 of 2)	exon (NM_024613, exon 2 of 2)	20815	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
81548	chr16	9112121	9113000	+	0	NA	intron (NM_014117, intron 3 of 3)	intron (NM_014117, intron 3 of 3)	20916	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
162521	chr3	48592221	48592700	+	0	NA	exon (NM_000094, exon 9 of 119)	exon (NM_000094, exon 9 of 119)	2869	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
233546	chrX	253551	253850	+	0	NA	Intergenic	Intergenic	-22656	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228346	chr9	99000171	99000930	+	0	NA	intron (NM_001855, intron 6 of 41)	MIR|SINE|MIR	56643	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
95940	chr17	38960201	38960880	+	0	NA	intron (NM_001008777, intron 3 of 10)	intron (NM_001008777, intron 3 of 10)	6863	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
58409	chr12	131912301	131913130	+	0	NA	intron (NM_003565, intron 13 of 27)	intron (NM_003565, intron 13 of 27)	-16561	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
19315	chr1	173298001	173298400	+	0	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	-90869	NM_003326	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
184513	chr5	100904201	100904800	+	0	NA	Intergenic	Intergenic	-1218	NM_175052	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
86835	chr16	67894671	67895730	+	0	NA	intron (NM_006742, intron 1 of 2)	AluSq2|SINE|Alu	1946	NM_006742	5681		NM_006742	ENSG00000159792	PSKH1	-	protein serine kinase H1	protein-coding
62553	chr13	99893171	99893330	+	0	NA	TTS (NM_206808)	TTS (NM_206808)	63915	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
226555	chr9	72361051	72361150	+	0	NA	intron (NM_001102421, intron 1 of 5)	intron (NM_001102421, intron 1 of 5)	3456	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
198623	chr6	107756651	107757350	+	0	NA	intron (NM_001286408, intron 1 of 6)	intron (NM_001286408, intron 1 of 6)	-24850	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
30876	chr10	86835901	86836280	+	0	NA	intron (NM_004329, intron 1 of 12)	intron (NM_004329, intron 1 of 12)	79471	NM_004329	657		NM_004329	ENSG00000107779	BMPR1A	10q23del|ACVRLK3|ALK-3|ALK3|BMPR-1A|CD292|SKR5	bone morphogenetic protein receptor type 1A	protein-coding
54345	chr12	89683201	89683600	+	0	NA	intron (NM_001366520, intron 1 of 21)	MLT1G|LTR|ERVL-MaLR	25438	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
177829	chr4	125313501	125313780	+	0	NA	Intergenic	Intergenic	-1315	NM_001291303	79633		NM_024582	ENSG00000196159	FAT4	CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2	FAT atypical cadherin 4	protein-coding
71020	chr14	104767421	104767680	+	0	NA	Intergenic	Intergenic	14403	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
219860	chr8	85108601	85108800	+	0	NA	intron (NM_001349637, intron 1 of 18)	intron (NM_001349637, intron 1 of 18)	1462	NM_001349639	85444		NM_033402	ENSG00000133739	LRRCC1	CLERC|CLERK|SAP2|VFL1	leucine rich repeat and coiled-coil centrosomal protein 1	protein-coding
28032	chr10	43227751	43228170	+	0	NA	intron (NM_145313, intron 1 of 12)	L2a|LINE|L2	1779	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
203453	chr7	379521	380530	+	0	NA	intron (NR_033960, intron 1 of 2)	intron (NR_033960, intron 1 of 2)	600	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
182217	chr5	56849351	56850050	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	34151	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
178240	chr4	143357401	143357600	+	0	NA	intron (NM_002039, intron 1 of 9)	intron (NM_002039, intron 1 of 9)	14040	NR_036091	100423017		NR_036091	ENSG00000265623	MIR3139	-	microRNA 3139	ncRNA
5370	chr1	25396551	25396800	+	0	NA	intron (NM_138618, intron 3 of 8)	THE1D|LTR|ERVL-MaLR	24239	NM_138618	6006		NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHCe(152N)|RHE|RHIXB|RHNA|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII|SLC42A4	Rh blood group CcEe antigens	protein-coding
96882	chr17	42101551	42102350	+	0	NA	intron (NM_024119, intron 13 of 13)	intron (NM_024119, intron 13 of 13)	-3477	NM_001378270	201181		NM_001013624	ENSG00000187595	ZNF385C	-	zinc finger protein 385C	protein-coding
164341	chr3	58007171	58007330	+	0	NA	Intergenic	Intergenic	-1172	NM_001164317	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
123299	chr19	53562721	53563350	+	0	NA	intron (NM_001317116, intron 2 of 4)	intron (NM_001317116, intron 2 of 4)	7728	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
49716	chr12	31251751	31252350	+	0	NA	Intergenic	Intergenic	-50815	NR_153414	144203		NM_173498	ENSG00000177359	OVOS2	-	alpha-2-macroglobulin like 1 pseudogene	pseudo
21328	chr1	204526501	204527100	+	0	NA	intron (NM_001278519, intron 3 of 4)	intron (NM_001278519, intron 3 of 4)	10394	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
122482	chr19	49557851	49558180	+	0	NA	intron (NM_001270960, intron 4 of 8)	intron (NM_001270960, intron 4 of 8)	22541	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
108481	chr18	70683351	70684080	+	0	NA	Intergenic	Intergenic	-32761	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
53128	chr12	57837801	57838600	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	8529	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
99341	chr17	49854501	49854900	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-6683	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
217406	chr8	28363371	28364350	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	22600	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
39242	chr11	57669671	57669980	+	0	NA	intron (NM_015457, intron 1 of 11)	intron (NM_015457, intron 1 of 11)	1711	NM_015457	25921		NM_015457	ENSG00000156599	ZDHHC5	DHHC5|ZNF375	zinc finger DHHC-type palmitoyltransferase 5	protein-coding
83000	chr16	22189601	22191800	+	0	NA	TTS (NM_001365288)	TTS (NM_001365288)	-15578	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
141214	chr2	239380671	239381700	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	19835	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
205565	chr7	20786671	20787180	+	0	NA	promoter-TSS (NM_182700)	promoter-TSS (NM_182700)	-39	NM_182700	221833		NM_182700	ENSG00000164651	SP8	BTD	Sp8 transcription factor	protein-coding
168146	chr3	138950971	138951130	+	0	NA	3' UTR (NM_001040061, exon 3 of 3)	3' UTR (NM_001040061, exon 3 of 3)	3833	NM_001040061	401089		NM_001040061	ENSG00000206262	FOXL2NB	C3orf72	FOXL2 neighbor	protein-coding
3893	chr1	17053501	17054880	+	0	NA	promoter-TSS (NM_003000)	promoter-TSS (NM_003000)	-158	NM_003000	6390		NM_003000	ENSG00000117118	SDHB	CWS2|IP|MC2DN4|PGL4|PPGL4|SDH|SDH1|SDH2|SDHIP	succinate dehydrogenase complex iron sulfur subunit B	protein-coding
9487	chr1	51192151	51192500	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	42771	NR_147076	105378716		NR_147076	ENSG00000203356	LINC01562	-	long intergenic non-protein coding RNA 1562	ncRNA
154713	chr22	36432571	36432730	+	0	NA	Intergenic	Intergenic	-44683	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
114793	chr19	13781551	13781850	+	0	NA	Intergenic	Intergenic	7244	NM_014047	28974		NM_014047	ENSG00000104979	C19orf53	HSPC023|L10K|LYDG10	chromosome 19 open reading frame 53	protein-coding
53821	chr12	69329101	69329300	+	0	NA	Intergenic	HERVK22-int|LTR|ERVK	-19181	NM_000239	4069		NM_000239	ENSG00000090382	LYZ	LYZF1|LZM	lysozyme	protein-coding
224141	chr9	4760501	4760700	+	0	NA	Intergenic	L1MA8|LINE|L1	-18557	NM_001199853	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
101411	chr17	67387971	67388430	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	10919	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
85606	chr16	53550021	53550480	+	0	NA	Intergenic	Intergenic	-46946	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
178573	chr4	151129251	151129550	+	0	NA	intron (NM_001378121, intron 18 of 20)	AluSz|SINE|Alu	25573	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
68215	chr14	76918601	76919000	+	0	NA	Intergenic	Intergenic	-40838	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
148284	chr20	63702701	63702980	+	0	NA	intron (NM_003224, intron 4 of 7)	intron (NM_003224, intron 4 of 7)	-4602	NM_001083113	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
88623	chr16	85620101	85620300	+	0	NA	intron (NM_001278184, intron 1 of 14)	AluJo|SINE|Alu	6878	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
200538	chr6	136256471	136256630	+	0	NA	TTS (NM_001077440)	TTS (NM_001077440)	-6239	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
190459	chr5	180079321	180079630	+	0	NA	Intergenic	MamRep4096|DNA|hAT-Tip100	-7716	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
66986	chr14	66649601	66650030	+	0	NA	intron (NM_020806, intron 1 of 22)	Charlie3|DNA|hAT-Charlie	141668	NM_001377516	10243		NM_020806	ENSG00000171723	GPHN	GEPH|GPH|GPHRYN|HKPX1|MOCODC	gephyrin	protein-coding
158331	chr22	50443821	50444400	+	0	NA	TTS (NM_001365819)	TTS (NM_001365819)	30925	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
231599	chr9	131554621	131555300	+	0	NA	exon (NM_001365666, exon 2 of 4)	exon (NM_001365666, exon 2 of 4)	9437	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
101597	chr17	68101051	68103230	+	0	NA	intron (NR_027418, intron 1 of 5)	CpG	585	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
3364	chr1	15607251	15607430	+	0	NA	Intergenic	AluY|SINE|Alu	-10118	NM_032341	84301		NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
205472	chr7	17306551	17306850	+	0	NA	intron (NM_001621, intron 1 of 10)	intron (NM_001621, intron 1 of 10)	8048	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
21964	chr1	208245201	208245580	+	0	NA	Intergenic	Intergenic	-1006	NM_025179	5362		NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
102464	chr17	75719701	75719980	+	0	NA	Intergenic	MIRc|SINE|MIR	-1619	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
152260	chr22	20244901	20246180	+	0	NA	intron (NM_023004, intron 1 of 1)	intron (NM_023004, intron 1 of 1)	3671	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
182030	chr5	55590701	55591200	+	0	NA	Intergenic	LTR103b_Mam|LTR|ERV1?	-55872	NR_103485	8611		NM_003711	ENSG00000067113	PLPP1	LLP1a|LPP1|PAP-2a|PAP2|PPAP2A	phospholipid phosphatase 1	protein-coding
158004	chr22	49872801	49874280	+	0	NA	intron (NM_014838, intron 1 of 1)	Tigger1|DNA|TcMar-Tigger	19696	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
124991	chr2	9422521	9424530	+	0	NA	promoter-TSS (NM_001321833)	promoter-TSS (NM_001321833)	3	NR_134955	9270		NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin subunit beta 1 binding protein 1	protein-coding
11331	chr1	89522351	89522650	+	0	NA	Intergenic	L1PA4|LINE|L1	-2329	NM_015350	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
15339	chr1	149920621	149920880	+	0	NA	Intergenic	L2c|LINE|L2	-2906	NM_014849	9900		NM_014849	ENSG00000159164	SV2A	DEE113|SLC22B1|SV2	synaptic vesicle glycoprotein 2A	protein-coding
160376	chr3	27905371	27906130	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-71614	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
60202	chr13	40434701	40435230	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	46041	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
213045	chr7	131051271	131051430	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	55680	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
142261	chr20	3169071	3169400	+	0	NA	intron (NM_001282533, intron 1 of 5)	MER96|DNA|hAT-Tip100	4314	NM_001365618	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
73113	chr15	41143471	41143630	+	0	NA	Intergenic	MER51B|LTR|ERV1	-27270	NM_017553	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
76977	chr15	78241001	78241430	+	0	NA	Intergenic	Intergenic	-6650	NM_001199377	23205		NM_015162	ENSG00000103740	ACSBG1	BG|BG1|BGM|GR-LACS|LPD	acyl-CoA synthetase bubblegum family member 1	protein-coding
53783	chr12	68826871	68827230	+	0	NA	intron (NM_002392, intron 7 of 10)	AluSc8|SINE|Alu	18026	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
132872	chr2	111124101	111124580	+	0	NA	intron (NM_138626, intron 2 of 2)	AluSc8|SINE|Alu	3426	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
236336	chrX	69538201	69538780	+	0	NA	Intergenic	CpG	34164	NM_015686	27112		NM_015686	ENSG00000130054	NALF2	CXorf63|FAM155B|TED|TMEM28|bB57D9.1	NALCN channel auxiliary factor 2	protein-coding
235864	chrX	51332321	51333030	+	0	NA	promoter-TSS (NM_001304963)	promoter-TSS (NM_001304963)	-147	NM_001304963	170685		NM_153183	ENSG00000122824	NUDT10	APS2|DIPP3-alpha|DIPP3a	nudix hydrolase 10	protein-coding
121246	chr19	46663521	46663780	+	0	NA	intron (NR_040041, intron 1 of 2)	intron (NR_040041, intron 1 of 2)	2172	NR_040041	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
148330	chr20	63774821	63775380	+	0	NA	intron (NM_025224, intron 3 of 4)	intron (NM_025224, intron 3 of 4)	30403	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
216161	chr8	11703221	11703480	+	0	NA	promoter-TSS (NM_002052)	promoter-TSS (NM_002052)	-852	NM_001308093	2626		NM_002052	ENSG00000136574	GATA4	ASD2|TACHD|TOF|VSD1	GATA binding protein 4	protein-coding
114694	chr19	13121701	13122980	+	0	NA	intron (NM_052876, intron 1 of 5)	MIR3|SINE|MIR	4076	NM_052876	112939		NM_052876	ENSG00000160877	NACC1	BEND8|BTBD14B|BTBD30|NAC-1|NAC1|NECFM	nucleus accumbens associated 1	protein-coding
154614	chr22	36304671	36305230	+	0	NA	intron (NM_002473, intron 18 of 40)	intron (NM_002473, intron 18 of 40)	-18043	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
207525	chr7	44810121	44810380	+	0	NA	Intergenic	AluSx3|SINE|Alu	13569	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
2230	chr1	8859251	8860200	+	0	NA	Intergenic	AluSx|SINE|Alu	6865	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
169164	chr3	156643671	156644100	+	0	NA	Intergenic	Intergenic	-30705	NM_015508	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
109983	chr19	1408501	1409900	+	0	NA	intron (NM_170711, intron 1 of 12)	intron (NM_170711, intron 1 of 12)	1614	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
81455	chr16	8885801	8886650	+	0	NA	Intergenic	Intergenic	-17213	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
66591	chr14	63522801	63523450	+	0	NA	intron (NM_006246, intron 2 of 13)	SVA_D|Retroposon|SVA	-14887	NM_001282182	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
89721	chr16	89419521	89419780	+	0	NA	intron (NR_045839, intron 1 of 9)	intron (NR_045839, intron 1 of 9)	-11268	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109212	chr19	470821	471280	+	0	NA	intron (NM_001385598, intron 2 of 3)	MIRc|SINE|MIR	1581	NM_001385600	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
47005	chr12	188771	189380	+	0	NA	Intergenic	CpG	-14570	NR_120475	101929384		NR_120475	ENSG00000256577	SLC6A12-AS1	-	SLC6A12 antisense RNA 1	ncRNA
91284	chr17	4140401	4141100	+	0	NA	intron (NM_015113, intron 1 of 54)	intron (NM_015113, intron 1 of 54)	2280	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
221406	chr8	123519421	123519680	+	0	NA	intron (NM_148177, intron 1 of 5)	AluY|SINE|Alu	12593	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
46142	chr11	123046371	123046530	+	0	NA	Intergenic	Intergenic	11706	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
73326	chr15	41940151	41940830	+	0	NA	intron (NM_139265, intron 3 of 5)	intron (NM_139265, intron 3 of 5)	19073	NR_120332	101928363		NR_120332	ENSG00000259883	EHD4-AS1	-	EHD4 antisense RNA 1	ncRNA
175735	chr4	77708601	77708930	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	102945	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
179852	chr5	523221	523830	+	0	NA	intron (NM_001284351, intron 1 of 16)	intron (NM_001284351, intron 1 of 16)	924	NM_001284351	6550		NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
41230	chr11	65716221	65716930	+	0	NA	intron (NM_182709, intron 8 of 12)	intron (NM_182709, intron 8 of 12)	4223	NM_032193	84153		NM_032193	ENSG00000172922	RNASEH2C	AGS3|AYP1	ribonuclease H2 subunit C	protein-coding
193170	chr6	29708501	29709630	+	0	NA	Intergenic	LTR43B|LTR|ERV1	-14275	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
118541	chr19	36112951	36113600	+	0	NA	TTS (NM_006233)	TTS (NM_006233)	1600	NM_006233	5438		NM_006233	ENSG00000105258	POLR2I	RPB9|hRPB14.5	RNA polymerase II subunit I	protein-coding
123277	chr19	53537101	53538840	+	0	NA	promoter-TSS (NM_001253799)	promoter-TSS (NM_001253799)	-175	NM_001079906	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
208040	chr7	55951571	55953030	+	0	NA	intron (NM_015969, intron 1 of 2)	MIRb|SINE|MIR	423	NM_015969	51373		NM_015969	ENSG00000239789	MRPS17	HSPC011|MRP-S17|RPMS17|S17mt|uS17m	mitochondrial ribosomal protein S17	protein-coding
25628	chr10	8085671	8085830	+	0	NA	Intergenic	AluJb|SINE|Alu	31062	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
195306	chr6	36557601	36557800	+	0	NA	Intergenic	AluSc8|SINE|Alu	-10221	NM_001305102	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
126219	chr2	26961601	26962050	+	0	NA	Intergenic	Intergenic	-8812	NM_012326	22924		NM_012326	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule associated protein RP/EB family member 3	protein-coding
140983	chr2	237996321	237996580	+	0	NA	intron (NR_037904, intron 4 of 18)	intron (NR_037904, intron 4 of 18)	27657	NM_001278305	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
67799	chr14	73766771	73766930	+	0	NA	intron (NM_001043318, intron 1 of 11)	AluY|SINE|Alu	-6547	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
143698	chr20	32189251	32190930	+	0	NA	non-coding (NR_002781, exon 1 of 1)	non-coding (NR_002781, exon 1 of 1)	270	NR_002781	128854		NM_178465	ENSG00000235217	TSPY26P	TSPYL3|bA392M18.1	testis specific protein Y-linked 26, pseudogene	pseudo
184132	chr5	94626801	94627000	+	0	NA	intron (NM_032290, intron 1 of 20)	intron (NM_032290, intron 1 of 20)	8231	NM_032290	84250		NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding
231320	chr9	130111221	130111680	+	0	NA	intron (NM_001136558, intron 15 of 18)	AluJr|SINE|Alu	32769	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
12065	chr1	98797471	98797830	+	0	NA	Intergenic	Intergenic	135929	NR_033716	51375		NM_015976	ENSG00000162627	SNX7	-	sorting nexin 7	protein-coding
66262	chr14	61362871	61363030	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	41507	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
125631	chr2	19358351	19359250	+	0	NA	promoter-TSS (NM_145260)	promoter-TSS (NM_145260)	-177	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
158447	chr22	50617071	50617430	+	0	NA	Intergenic	AluSc8|SINE|Alu	10902	NM_000487	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
140212	chr2	231711901	231713100	+	0	NA	promoter-TSS (NR_036052).4	promoter-TSS (NR_036052).4	-814	NR_036262	100422885		NR_036262	ENSG00000283498	MIR1244-2	-	microRNA 1244-2	ncRNA
17293	chr1	156439651	156439750	+	0	NA	Intergenic	Intergenic	-10152	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
89883	chr16	89652471	89652830	+	0	NA	intron (NM_001083314, intron 1 of 5)	intron (NM_001083314, intron 1 of 5)	5058	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
181915	chr5	54745471	54745980	+	0	NA	Intergenic	MER67B|LTR|ERV1	-1467	NR_104658	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
223074	chr8	143400851	143401680	+	0	NA	Intergenic	Intergenic	-16414	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
172838	chr4	3204151	3204600	+	0	NA	intron (NM_002111, intron 42 of 66)	intron (NM_002111, intron 42 of 66)	-39994	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
164868	chr3	71073301	71073500	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-8476	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
24600	chr1	246324701	246325230	+	0	NA	intron (NM_001375963, intron 5 of 11)	intron (NM_001375963, intron 5 of 11)	30575	NM_001375963	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
13758	chr1	117004571	117005680	+	0	NA	intron (NM_001256106, intron 1 of 9)	MLT1A0|LTR|ERVL-MaLR	3375	NM_004258	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
48129	chr12	7900351	7900650	+	0	NA	Intergenic	AluSx|SINE|Alu	-9304	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
16496	chr1	154808721	154808980	+	0	NA	intron (NM_170782, intron 2 of 7)	MIR3|SINE|MIR	51026	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
120808	chr19	45471301	45471600	+	0	NA	intron (NM_006732, intron 3 of 3)	intron (NM_006732, intron 3 of 3)	3454	NM_006732	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
117246	chr19	19436601	19436800	+	0	NA	intron (NM_001384516, intron 2 of 12)	intron (NM_001384516, intron 2 of 12)	1637	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
12090	chr1	99798751	99798850	+	0	NA	Intergenic	AluY|SINE|Alu	-32165	NM_001361041	391059		NM_001013660	ENSG00000156869	FRRS1	SDFR2|SDR2	ferric chelate reductase 1	protein-coding
237824	chrX	129985671	129985830	+	0	NA	intron (NM_001379450, intron 1 of 13)	intron (NM_001379450, intron 1 of 13)	3115	NM_021946	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
115934	chr19	16630171	16630350	+	0	NA	Intergenic	AluSz|SINE|Alu	-2056	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
166189	chr3	111699671	111700180	+	0	NA	intron (NM_153268, intron 1 of 3)	intron (NM_153268, intron 1 of 3)	-22492	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
170768	chr3	188553471	188554280	+	0	NA	intron (NR_164692, intron 5 of 9)	intron (NR_164692, intron 5 of 9)	14791	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
23411	chr1	228278951	228279250	+	0	NA	intron (NM_052843, intron 26 of 80)	intron (NM_052843, intron 26 of 80)	-65436	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
188985	chr5	163548701	163548900	+	0	NA	Intergenic	MamRep1527|LTR|LTR	43181	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
81937	chr16	11789921	11790430	+	0	NA	intron (NM_014153, intron 1 of 22)	L1MC5a|LINE|L1	7083	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
226083	chr9	62667301	62667700	+	0	NA	Intergenic	Intergenic	-133965	NR_121647	103352539		NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
182854	chr5	69559571	69561000	+	0	NA	promoter-TSS (NM_001098728).2	promoter-TSS (NM_001098728).2	62	NR_033417	653238		NM_001098729		GTF2H2B	-	general transcription factor IIH subunit 2B (pseudogene)	pseudo
135492	chr2	161900351	161900450	+	0	NA	intron (NM_001178016, intron 11 of 26)	intron (NM_001178016, intron 11 of 26)	173815	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
223938	chr9	808621	809080	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-32847	NM_021951	1761		NM_021951	ENSG00000137090	DMRT1	CT154|DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
231577	chr9	131514771	131515180	+	0	NA	intron (NR_148392, intron 12 of 20)	intron (NR_148392, intron 12 of 20)	12057	NM_001353196	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
22383	chr1	218347521	218348030	+	0	NA	intron (NM_003238, intron 1 of 6)	intron (NM_003238, intron 1 of 6)	-2097	NR_046268	728463		NR_046268		TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
101579	chr17	68060251	68060950	+	0	NA	Intergenic	Intergenic	24640	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
80554	chr16	2818471	2818850	+	0	NA	intron (NR_073012, intron 3 of 5)	intron (NR_073012, intron 3 of 5)	1423	NM_144956	10942		NM_006799	ENSG00000007038	PRSS21	ESP-1|ESP1|TEST1|TESTISIN	serine protease 21	protein-coding
143666	chr20	31954951	31955750	+	0	NA	Intergenic	L2c|LINE|L2	-3304	NM_030815	81572		NM_030815	ENSG00000088356	PDRG1	C20orf126|PDRG	p53 and DNA damage regulated 1	protein-coding
209382	chr7	76308451	76308750	+	0	NA	Intergenic	AluSx4|SINE|Alu	5927	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
141857	chr20	640021	640450	+	0	NA	Intergenic	L2a|LINE|L2	12965	NM_080725	140809		NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
43160	chr11	75342871	75343180	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	-7839	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
164896	chr3	71105351	71105650	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	25086	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
77288	chr15	82286151	82286650	+	0	NA	Intergenic	LTR107_Mam|LTR|LTR	-6883	NR_045529	390660		NR_045529	ENSG00000274376	ADAMTS7P1	ADAMTS7P2	ADAMTS7 pseudogene 1	pseudo
43408	chr11	77154801	77155280	+	0	NA	intron (NM_001369365, intron 5 of 49)	intron (NM_001369365, intron 5 of 49)	26794	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
228891	chr9	112747951	112749030	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-2270	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
226389	chr9	70397071	70397430	+	0	NA	intron (NM_001206, intron 1 of 1)	AluSz|SINE|Alu	17407	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
202892	chr6	159985421	159985680	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	16468	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
4632	chr1	22118321	22118630	+	0	NA	3' UTR (NM_030761, exon 5 of 5)	3' UTR (NM_030761, exon 5 of 5)	24622	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
80042	chr16	1957651	1958150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1638	NM_004548	4716		NM_004548	ENSG00000140990	NDUFB10	MC1DN35|PDSW	NADH:ubiquinone oxidoreductase subunit B10	protein-coding
15631	chr1	150633151	150633450	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-3678	NM_207168	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
11639	chr1	91763501	91763900	+	0	NA	intron (NR_036634, intron 4 of 17)	intron (NR_036634, intron 4 of 17)	122451	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
170796	chr3	189123971	189124600	+	0	NA	Intergenic	L2c|LINE|L2	-47686	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
43195	chr11	75413821	75414200	+	0	NA	intron (NM_001256802, intron 6 of 6)	MLT1N2|LTR|ERVL-MaLR	9589	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
169505	chr3	169965951	169967780	+	0	NA	promoter-TSS (NM_003262)	promoter-TSS (NM_003262)	58	NM_003262	7095		NM_003262	ENSG00000008952	SEC62	Dtrp1|HTP1|TLOC1|TP-1	SEC62 homolog, preprotein translocation factor	protein-coding
215910	chr8	8171751	8172680	+	0	NA	intron (NR_147089, intron 2 of 3)	HERVH-int|LTR|ERV1	55288	NR_147089	105379219		NR_147089		FAM85B	lncRNA-HEIM	family with sequence similarity 85 member B	ncRNA
115078	chr19	14212671	14213230	+	0	NA	Intergenic	L2|LINE|L2	-6781	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
77939	chr15	89331221	89331850	+	0	NA	intron (NM_002693, intron 2 of 22)	intron (NM_002693, intron 2 of 22)	3289	NM_001126131	5428		NM_002693	ENSG00000140521	POLG	MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE	DNA polymerase gamma, catalytic subunit	protein-coding
155140	chr22	37656471	37657180	+	0	NA	TTS (NM_001350055)	TTS (NM_001350055)	1552	NR_109952	101927051		NR_109952	ENSG00000233360	PDXP-DT	-	PDXP divergent transcript	ncRNA
99649	chr17	50681251	50681600	+	0	NA	intron (NM_003786, intron 26 of 30)	L2a|LINE|L2	26489	NM_052855	91369		NM_052855	ENSG00000154945	ANKRD40	-	ankyrin repeat domain 40	protein-coding
233742	chrX	1382251	1382700	+	0	NA	3' UTR (NM_002183, exon 12 of 12).2	3' UTR (NM_002183, exon 12 of 12).2	9638	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
63240	chr13	113934851	113935430	+	0	NA	Intergenic	Intergenic	-6149	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
175869	chr4	80007801	80008550	+	0	NA	intron (NM_001145794, intron 12 of 15)	intron (NM_001145794, intron 12 of 15)	65054	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
137849	chr2	200801171	200801530	+	0	NA	intron (NR_110275, intron 1 of 3)	L1PREC2|LINE|L1	-10196	NM_014670	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
207847	chr7	50351421	50351680	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	32502	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
34154	chr10	128063951	128065700	+	0	NA	intron (NM_001323354, intron 9 of 19)	intron (NM_001323354, intron 9 of 19)	-2400	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
8980	chr1	44638221	44638480	+	0	NA	intron (NM_001319957, intron 7 of 13)	intron (NM_001319957, intron 7 of 13)	6382	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
125709	chr2	20443221	20443980	+	0	NA	Intergenic	Intergenic	-3474	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
49388	chr12	22429071	22429230	+	0	NA	Intergenic	L1PA13|LINE|L1	-94436	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
229364	chr9	121055671	121055900	+	0	NA	intron (NM_001317163, intron 1 of 40)	L1M1|LINE|L1	-5510	NM_001735	727		NM_001735	ENSG00000106804	C5	C5D|C5a|C5b|CPAMD4|ECLZB	complement C5	protein-coding
71875	chr15	22428551	22429200	+	0	NA	intron (NR_033350, intron 14 of 17)	intron (NR_033350, intron 14 of 17)	9151	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
49512	chr12	25369771	25369930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-118921	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
212620	chr7	129259471	129259830	+	0	NA	intron (NM_001130720, intron 1 of 16)	MIR1_Amn|SINE|MIR	34620	NM_001130720	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
164437	chr3	59375051	59375150	+	0	NA	Intergenic	MIRb|SINE|MIR	283397	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
84942	chr16	31350121	31350530	+	0	NA	Intergenic	Intergenic	-4851	NM_001286375	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
48097	chr12	7460321	7460880	+	0	NA	Intergenic	L1M1|LINE|L1	-16415	NM_001297650	283316		NM_174941	ENSG00000177675	CD163L1	CD163B|M160|SCARI2|STAR|WC1	CD163 molecule like 1	protein-coding
112126	chr19	5601621	5601880	+	0	NA	intron (NM_014649, intron 11 of 20)	intron (NM_014649, intron 11 of 20)	21026	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
32071	chr10	101093271	101093930	+	0	NA	intron (NR_130723, intron 2 of 2)	intron (NR_130723, intron 2 of 2)	27217	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
172467	chr4	2044421	2044680	+	0	NA	TTS (NM_001168243)	TTS (NM_001168243)	2555	NM_001141936	401115		NM_001141936	ENSG00000243449	NICOL1	C4orf48|CHR4_55|NICOL	NELL2 interacting cell ontogeny regulator 1	protein-coding
40251	chr11	63677971	63678600	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3165	NM_201429	10313		NM_006054	ENSG00000133318	RTN3	ASYIP|HAP|NSPL2|NSPLII|RTN3-A1	reticulon 3	protein-coding
204721	chr7	5550201	5550400	+	0	NA	Intergenic	AluY|SINE|Alu	-19699	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
138220	chr2	202752071	202752430	+	0	NA	intron (NM_173511, intron 4 of 7)	MIRb|SINE|MIR	76984	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
171594	chr3	197168501	197168900	+	0	NA	intron (NM_001366214, intron 5 of 25)	intron (NM_001366214, intron 5 of 25)	15172	NM_001366221	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
81306	chr16	4691371	4691980	+	0	NA	TTS (NR_102267)	TTS (NR_102267)	-2018	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
139930	chr2	230780171	230780500	+	0	NA	intron (NM_016289, intron 2 of 8)	L1MC4a|LINE|L1	66787	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
145141	chr20	38826001	38826200	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	20403	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
184964	chr5	113334701	113335150	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	-39987	NM_002387	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
173574	chr4	10113521	10114350	+	0	NA	intron (NM_017491, intron 2 of 14)	intron (NM_017491, intron 2 of 14)	2864	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
165761	chr3	105755321	105755980	+	0	NA	intron (NR_135806, intron 4 of 20)	L1M5|LINE|L1	111941	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
39811	chr11	62015651	62015950	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	-48166	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
162608	chr3	48701801	48702000	+	0	NA	intron (NM_016291, intron 1 of 5)	AluSx1|SINE|Alu	15321	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
188492	chr5	154787321	154787580	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	30296	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
27517	chr10	32302421	32302880	+	0	NA	intron (NR_168511, intron 2 of 13)	AluSx|SINE|Alu	44508	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
33604	chr10	119538471	119538630	+	0	NA	intron (NM_001005339, intron 1 of 4)	intron (NM_001005339, intron 1 of 4)	-2017	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
143283	chr20	25257401	25257600	+	0	NA	intron (NM_002862, intron 1 of 19)	intron (NM_002862, intron 1 of 19)	9415	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
92660	chr17	10696701	10698280	+	0	NA	promoter-TSS (NM_004589)	promoter-TSS (NM_004589)	43	NM_004589	6341		NM_004589	ENSG00000133028	SCO1	MC4DN4|SCOD1	synthesis of cytochrome C oxidase 1	protein-coding
233411	chr9	137578101	137579680	+	0	NA	promoter-TSS (NM_001346376)	promoter-TSS (NM_001346376)	35	NM_001346396	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
3459	chr1	15943251	15944300	+	0	NA	intron (NM_001324138, intron 9 of 14)	intron (NM_001324138, intron 9 of 14)	32326	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
129133	chr2	65302071	65302580	+	0	NA	Intergenic	Intergenic	64453	NM_001128210	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
143912	chr20	32607751	32607850	+	0	NA	intron (NR_034152, intron 2 of 2)	L2a|LINE|L2	20321	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
117279	chr19	19474021	19475100	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	39497	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
130727	chr2	86764521	86765400	+	0	NA	intron (NM_022780, intron 4 of 8)	intron (NM_022780, intron 4 of 8)	25953	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
207341	chr7	44065651	44065950	+	0	NA	promoter-TSS (NM_000290)	promoter-TSS (NM_000290)	-233	NM_000290	5224		NM_000290	ENSG00000164708	PGAM2	GSD10|PGAM-M|PGAMM	phosphoglycerate mutase 2	protein-coding
106471	chr18	14172501	14172700	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-6497	NR_040113	440482		NM_001029999		ANKRD20A5P	ANKRD20A5	ankyrin repeat domain 20 family member A5, pseudogene	pseudo
200729	chr6	137707551	137708840	+	0	NA	Intergenic	Intergenic	30842	NR_121618	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
195581	chr6	37517301	37519580	+	0	NA	intron (NR_126057, intron 1 of 3)	MIR|SINE|MIR	11092	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
62082	chr13	94507151	94507500	+	0	NA	intron (NM_001322186, intron 1 of 9)	L1MC4a|LINE|L1	-27643	NM_001129889	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
121122	chr19	45999421	45999980	+	0	NA	intron (NM_001267723, intron 1 of 13)	intron (NM_001267723, intron 1 of 13)	4233	NM_001267723	729440		NM_001080402	ENSG00000104983	CCDC61	VFL3|hVFL3	coiled-coil domain containing 61	protein-coding
16285	chr1	154159771	154159930	+	0	NA	intron (NM_001043352, intron 7 of 7)	intron (NM_001043352, intron 7 of 7)	-4734	NM_001159484	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
146274	chr20	49055051	49055150	+	0	NA	intron (NM_001362762, intron 1 of 24)	MER46C|DNA|TcMar-Tigger	8788	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
162958	chr3	49671521	49672400	+	0	NA	TTS (NM_003458)	TTS (NM_003458)	-2391	NM_001640	327		NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
40771	chr11	64864121	64867250	+	0	NA	intron (NM_001282444, intron 4 of 6)	intron (NM_001282444, intron 4 of 6)	12924	NR_162101	113218486		NR_162101		MIR10392	-	microRNA 10392	ncRNA
176583	chr4	98706021	98706880	+	0	NA	Intergenic	LTR33|LTR|ERVL	47548	NR_148380	105377342		NR_148380		TSPAN5-DT	-	TSPAN5 divergent transcript	ncRNA
12320	chr1	100949201	100950250	+	0	NA	intron (NM_133496, intron 8 of 10)	L1PA6|LINE|L1	53635	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
115162	chr19	14418901	14420480	+	0	NA	promoter-TSS (NM_005804)	promoter-TSS (NM_005804)	-307	NR_046366	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
45933	chr11	121112671	121112830	+	0	NA	intron (NM_001378761, intron 10 of 29)	intron (NM_001378761, intron 10 of 29)	11507	NM_005422	7007		NM_005422	ENSG00000109927	TECTA	DFNA12|DFNA8|DFNB21	tectorin alpha	protein-coding
44048	chr11	95163521	95163980	+	0	NA	Intergenic	Intergenic	13211	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
118325	chr19	35549101	35550080	+	0	NA	TTS (NM_000704)	TTS (NM_000704)	-3561	NR_038396	100506469		NR_038396	ENSG00000236144	TMEM147-AS1	-	TMEM147 antisense RNA 1	ncRNA
179780	chr5	322451	323300	+	0	NA	intron (NM_001377239, intron 1 of 10)	CpG-21780	265	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
39118	chr11	48102921	48103180	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	6268	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
92695	chr17	14048121	14048400	+	0	NA	intron (NR_049718, intron 1 of 2)	intron (NR_049718, intron 1 of 2)	21198	NR_049718	100874058		NR_049718	ENSG00000236088	COX10-DT	COX10-AS|COX10-AS1|COX10AS	COX10 divergent transcript	ncRNA
212174	chr7	116953211	116954500	+	0	NA	promoter-TSS (NR_002329)	promoter-TSS (NR_002329)	7	NR_002329	338069		NR_002329	ENSG00000214188	ST7-OT4	NCRNA00042|ST7OT4	ST7 overlapping transcript 4	ncRNA
165490	chr3	99872071	99872230	+	0	NA	intron (NM_182909, intron 4 of 5)	MIR3|SINE|MIR	4023	NM_001370247	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
3288	chr1	15304621	15305030	+	0	NA	intron (NM_052929, intron 6 of 30)	MamRep564|Unknown|Unknown	39058	NR_148918	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
169932	chr3	178860271	178860450	+	0	NA	promoter-TSS (NR_126560)	promoter-TSS (NR_126560)	45	NR_126560	104797538		NR_126560		KCNMB2-AS1	-	KCNMB2 antisense RNA 1	ncRNA
206255	chr7	29270951	29271500	+	0	NA	intron (NM_001293072, intron 1 of 12)	intron (NM_001293072, intron 1 of 12)	-62255	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
60523	chr13	41402701	41403780	+	0	NA	Intergenic	LTR2752|LTR|ERV1	-39324	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
157854	chr22	48757251	48757350	+	0	NA	Intergenic	Intergenic	-22995	NR_039761	100616415		NR_039761	ENSG00000266887	MIR4535	-	microRNA 4535	ncRNA
9436	chr1	48774521	48774780	+	0	NA	intron (NM_001349795, intron 2 of 7)	intron (NM_001349795, intron 2 of 7)	2241	NM_024603	79656		NM_024603	ENSG00000162373	BEND5	C1orf165	BEN domain containing 5	protein-coding
168222	chr3	141294421	141295180	+	0	NA	3' UTR (NM_001037172, exon 6 of 6)	3' UTR (NM_001037172, exon 6 of 6)	-29386	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
89130	chr16	88509071	88509230	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	21903	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
75690	chr15	67834601	67835200	+	0	NA	TTS (NM_001365915)	TTS (NM_001365915)	3979	NR_120345	101929076		NR_120345	ENSG00000245719	SKOR1-AS1	-	SKOR1 antisense RNA 1	ncRNA
8019	chr1	38027901	38028900	+	0	NA	Intergenic	Intergenic	15666	NM_016037	51118		NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11 small subunit processome component	protein-coding
1735	chr1	5977521	5979180	+	0	NA	exon (NM_015102, exon 3 of 30)	exon (NM_015102, exon 3 of 30)	14075	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
18916	chr1	168410421	168411500	+	0	NA	intron (NR_037851, intron 3 of 3)	intron (NR_037851, intron 3 of 3)	11696	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
141351	chr2	240615351	240615650	+	0	NA	intron (NM_001195381, intron 2 of 5)	L1MC5|LINE|L1	-9745	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
151350	chr21	45699221	45699580	+	0	NA	intron (NM_001382286, intron 2 of 16)	intron (NM_001382286, intron 2 of 16)	-48614	NM_001348243	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
51350	chr12	51484171	51484900	+	0	NA	intron (NM_001039960, intron 16 of 24)	intron (NM_001039960, intron 16 of 24)	59418	NM_001258403	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
2121	chr1	8213051	8213400	+	0	NA	intron (NR_125998, intron 2 of 3)	intron (NR_125998, intron 2 of 3)	4553	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
177410	chr4	112288351	112289080	+	0	NA	Intergenic	Intergenic	-2811	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
153003	chr22	23183471	23183650	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	3051	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
73096	chr15	40955371	40955530	+	0	NA	exon (NM_024111, exon 3 of 3)	exon (NM_024111, exon 3 of 3)	1979	NM_024111	79094		NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
40948	chr11	65324071	65324230	+	0	NA	Intergenic	Intergenic	9284	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
233597	chrX	325571	325730	+	0	NA	Intergenic	AluY|SINE|Alu	6505	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
228397	chr9	99136551	99136650	+	0	NA	intron (NM_004612, intron 3 of 8)	intron (NM_004612, intron 3 of 8)	31487	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
199319	chr6	112704001	112704350	+	0	NA	Intergenic	L1HS|LINE|L1	356845	NM_001013734	442247		NM_001013734	ENSG00000251258	RFPL4B	RNF211	ret finger protein like 4B	protein-coding
1462	chr1	2672771	2672930	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-39834	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
75665	chr15	67758121	67758980	+	0	NA	intron (NM_145160, intron 19 of 21)	intron (NM_145160, intron 19 of 21)	-66959	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
103599	chr17	78718051	78718780	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-1383	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
55417	chr12	104487201	104487550	+	0	NA	intron (NM_018413, intron 1 of 2)	AluJr|SINE|Alu	30427	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
186641	chr5	138560401	138561200	+	0	NA	TTS (NR_002913)	TTS (NR_002913)	310	NR_002913	26785		NR_002913	ENSG00000206989	SNORD63	RNU63|SNORD63A|U63	small nucleolar RNA, C/D box 63	snoRNA
161923	chr3	46066771	46067330	+	0	NA	intron (NM_001381860, intron 1 of 3)	intron (NM_001381860, intron 1 of 3)	18794	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
185220	chr5	121963271	121963750	+	0	NA	intron (NM_152546, intron 1 of 7)	intron (NM_152546, intron 1 of 7)	1535	NM_152546	153443		NM_152546	ENSG00000151304	SRFBP1	BUD22|P49|Rlb1|STRAP|p49/STRAP	serum response factor binding protein 1	protein-coding
120977	chr19	45719071	45719230	+	0	NA	intron (NM_001329633, intron 1 of 1)	AluJb|SINE|Alu	-3872	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
5599	chr1	26039521	26040250	+	0	NA	exon (NM_001004434, exon 7 of 8)	exon (NM_001004434, exon 7 of 8)	6233	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
13278	chr1	112874251	112874350	+	0	NA	Intergenic	Intergenic	-7750	NR_162120	113218506		NR_162120		MIR11399	-	microRNA 11399	ncRNA
123026	chr19	51127051	51127400	+	0	NA	exon (NM_001198558, exon 4 of 7)	exon (NM_001198558, exon 4 of 7)	2319	NM_014441	27180		NM_014441	ENSG00000129450	SIGLEC9	CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9	sialic acid binding Ig like lectin 9	protein-coding
132428	chr2	105831201	105831400	+	0	NA	intron (NM_001004722, intron 2 of 3)	L1M2|LINE|L1	-20547	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
180473	chr5	11384901	11385280	+	0	NA	exon (NM_001288715, exon 6 of 21)	exon (NM_001288715, exon 6 of 21)	203827	NM_001288715	1501		NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding
203188	chr6	167218321	167218590	+	0	NA	Intergenic	Intergenic	-9845	NR_157263	112590798		NR_157263	ENSG00000280707	HPAT5	-	human pluripotency-associated transcript 5	ncRNA
225265	chr9	34374971	34375480	+	0	NA	intron (NM_020702, intron 1 of 1)	intron (NM_020702, intron 1 of 1)	1673	NM_020702	57462		NM_020702	ENSG00000164976	MYORG	IBGC7|KIAA1161|NET37	myogenesis regulating glycosidase (putative)	protein-coding
72031	chr15	28137421	28137880	+	0	NA	intron (NM_004667, intron 78 of 92)	Tigger1|DNA|TcMar-Tigger	-38335	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
82216	chr16	15017221	15017480	+	0	NA	exon (NM_001285449, exon 11 of 17)	exon (NM_001285449, exon 11 of 17)	-6953	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
23150	chr1	226722301	226723280	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	16385	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
211225	chr7	102636151	102636700	+	0	NA	TTS (NM_001114403)	TTS (NM_001114403)	6366	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
95442	chr17	36135571	36135930	+	0	NA	Intergenic	Intergenic	31923	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
129716	chr2	70888421	70889930	+	0	NA	intron (NR_126384, intron 2 of 3)	CpG	1304	NR_126384	104355141		NR_126384	ENSG00000237751	LINC01143	-	long intergenic non-protein coding RNA 1143	ncRNA
907	chr1	1689021	1689280	+	0	NA	intron (NM_001110781, intron 1 of 8)	AluSc8|SINE|Alu	3645	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
50331	chr12	47077721	47077980	+	0	NA	exon (NM_001143668, exon 3 of 3)	exon (NM_001143668, exon 3 of 3)	-1753	NM_001281429	91523		NM_138371	ENSG00000179715	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
149643	chr21	33544971	33545230	+	0	NA	intron (NM_032195, intron 1 of 6)	MIR|SINE|MIR	2062	NR_103797	6651		NM_003103	ENSG00000159140	SON	BASS1|C21orf50|DBP-5|NREBP|SON3|TOKIMS	SON DNA and RNA binding protein	protein-coding
221094	chr8	117520171	117521450	+	0	NA	promoter-TSS (NM_001363182)	promoter-TSS (NM_001363182)	97	NM_080651	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
59959	chr13	31898351	31898730	+	0	NA	intron (NR_027062, intron 1 of 3)	intron (NR_027062, intron 1 of 3)	51757	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
31835	chr10	99611851	99612750	+	0	NA	intron (NM_031212, intron 3 of 3)	intron (NM_031212, intron 3 of 3)	8139	NM_031212	81894		NM_031212	ENSG00000155287	SLC25A28	MFRN2|MRS3/4|MRS4L|NPD016	solute carrier family 25 member 28	protein-coding
57546	chr12	122182721	122183650	+	0	NA	promoter-TSS (NM_001098519)	promoter-TSS (NM_001098519)	62	NM_001098519	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
48327	chr12	9034071	9034430	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	30820	NR_034140	253128		NM_182550	ENSG00000214851	LINC00612	C12orf33	long intergenic non-protein coding RNA 612	ncRNA
168197	chr3	141140951	141141060	+	0	NA	intron (NM_080862, intron 2 of 2)	L1PA4|LINE|L1	89658	NM_080862	92369		NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
53744	chr12	68644271	68644930	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	-17225	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
205828	chr7	24820151	24820600	+	0	NA	intron (NM_015550, intron 16 of 22)	intron (NM_015550, intron 16 of 22)	-62436	NM_004403	1687		NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
199013	chr6	111089901	111090500	+	0	NA	intron (NM_018593, intron 1 of 5)	intron (NM_018593, intron 1 of 5)	2697	NM_018593	117247		NM_018593	ENSG00000112394	SLC16A10	MCT10|PRO0813|TAT1	solute carrier family 16 member 10	protein-coding
20592	chr1	198758871	198759200	+	0	NA	Intergenic	Intergenic	99947	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
153309	chr22	24190871	24191500	+	0	NA	Intergenic	Intergenic	9698	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
141678	chr2	241801651	241801750	+	0	NA	intron (NM_022134, intron 2 of 3)	intron (NM_022134, intron 2 of 3)	-7493	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
137876	chr2	200838101	200838300	+	0	NA	Intergenic	L1M1|LINE|L1	25814	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
148475	chr20	64047471	64047630	+	0	NA	TTS (NM_018419)	TTS (NM_018419)	2089	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
61	chr1	274101	274300	+	0	NA	Intergenic	Intergenic	-67603	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
100744	chr17	63933071	63933230	+	0	NA	promoter-TSS (NM_001329050)	promoter-TSS (NM_001329050)	-819	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
193723	chr6	31200851	31201380	+	0	NA	intron (NR_026791, intron 1 of 1)	MLT1G1|LTR|ERVL-MaLR	3355	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
32803	chr10	109891901	109892830	+	0	NA	intron (NM_001324128, intron 2 of 18)	intron (NM_001324128, intron 2 of 18)	30881	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
30366	chr10	77926051	77927150	+	0	NA	promoter-TSS (NR_024585)	promoter-TSS (NR_024585)	155	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
56033	chr12	110435401	110435600	+	0	NA	intron (NM_001287222, intron 6 of 6)	AluY|SINE|Alu	14837	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
121297	chr19	46728601	46729600	+	0	NA	intron (NM_001039877, intron 6 of 17)	intron (NM_001039877, intron 6 of 17)	-11973	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
191190	chr6	5260301	5262050	+	0	NA	promoter-TSS (NM_020408)	promoter-TSS (NM_020408)	168	NM_001374878	10667		NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
77106	chr15	78929521	78930280	+	0	NA	intron (NM_001319137, intron 8 of 12)	MIR|SINE|MIR	15146	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
37979	chr11	34951151	34951250	+	0	NA	intron (NM_001166158, intron 3 of 5)	AluYi6|SINE|Alu	9363	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
93227	chr17	17843051	17843400	+	0	NA	TTS (NM_001288787)	TTS (NM_001288787)	-6214	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
220238	chr8	96820851	96820950	+	0	NA	intron (NM_016134, intron 2 of 7)	L1MA4|LINE|L1	175658	NM_016134	10404		NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
36548	chr11	6610501	6610780	+	0	NA	3' UTR (NM_001014794, exon 13 of 13)	3' UTR (NM_001014794, exon 13 of 13)	1576	NM_006284	6881		NM_006284	ENSG00000166337	TAF10	TAF2A|TAF2H|TAFII30	TATA-box binding protein associated factor 10	protein-coding
25446	chr10	6589671	6590300	+	0	NA	Intergenic	Intergenic	-9339	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
208454	chr7	66967871	66968230	+	0	NA	Intergenic	Intergenic	27536	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
119159	chr19	39394571	39395130	+	0	NA	intron (NM_001317770, intron 3 of 3)	AluSc|SINE|Alu	3472	NM_001317770	55588		NM_017592	ENSG00000063322	MED29	IXL|MED2	mediator complex subunit 29	protein-coding
24479	chr1	244137621	244137880	+	0	NA	Intergenic	Intergenic	84545	NM_006352	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
212402	chr7	128121851	128121950	+	0	NA	Intergenic	Intergenic	40039	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
131453	chr2	96335451	96336500	+	0	NA	intron (NM_001281712, intron 1 of 16)	CpG	209	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
61374	chr13	51441651	51441980	+	0	NA	3' UTR (NM_001039938, exon 3 of 3)	3' UTR (NM_001039938, exon 3 of 3)	11221	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
202725	chr6	158908851	158909150	+	0	NA	intron (NR_160979, intron 2 of 2)	intron (NR_160979, intron 2 of 2)	20523	NR_160979	100130967		NM_001195032	ENSG00000203711	LINC02901	C6orf99	long intergenic non-protein coding RNA 2901	ncRNA
127486	chr2	42244451	42244980	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-74484	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
154278	chr22	31638251	31639100	+	0	NA	promoter-TSS (NM_178022)	promoter-TSS (NM_178022)	-152	NM_178022	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
97209	chr17	42759571	42759730	+	0	NA	intron (NR_024461, intron 3 of 3)	intron (NR_024461, intron 3 of 3)	-1577	NM_005854	10266		NM_005854	ENSG00000131477	RAMP2	-	receptor activity modifying protein 2	protein-coding
148562	chr20	64261021	64261380	+	0	NA	intron (NM_018257, intron 2 of 5)	intron (NM_018257, intron 2 of 5)	5452	NM_018257	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
90596	chr17	1614701	1615100	+	0	NA	intron (NM_152346, intron 4 of 13).2	intron (NM_152346, intron 4 of 13).2	-9866	NM_001284499	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
100643	chr17	63689051	63690000	+	0	NA	intron (NM_001363768, intron 11 of 16)	intron (NM_001363768, intron 11 of 16)	10600	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
193624	chr6	30768851	30770230	+	0	NA	intron (NR_138037, intron 1 of 3)	intron (NR_138037, intron 1 of 3)	2715	NR_138037	105375013		NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20	ncRNA
4609	chr1	22093421	22094630	+	0	NA	3' UTR (NM_001039802, exon 7 of 7)	3' UTR (NM_001039802, exon 7 of 7)	41316	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
135985	chr2	172153271	172153430	+	0	NA	Intergenic	Intergenic	50344	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
196067	chr6	42217351	42218230	+	0	NA	promoter-TSS (NM_018141)	promoter-TSS (NM_018141)	71	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
20261	chr1	193634501	193634780	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	329895	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
149744	chr21	34510571	34510730	+	0	NA	intron (NM_000219, intron 2 of 3)	L2a|LINE|L2	665	NM_001270403	3753		NM_000219	ENSG00000180509	KCNE1	ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK	potassium voltage-gated channel subfamily E regulatory subunit 1	protein-coding
101546	chr17	67997571	67998050	+	0	NA	Intergenic	AluY|SINE|Alu	-1341	NM_001382359	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
52468	chr12	55958521	55959500	+	0	NA	intron (NM_001200053, intron 1 of 8)	AluJr|SINE|Alu	7032	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
95545	chr17	36657751	36658250	+	0	NA	Intergenic	CpG	56417	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
175787	chr4	77798351	77798750	+	0	NA	intron (NM_001365006, intron 1 of 11)	L1MC|LINE|L1	20514	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
210749	chr7	100672401	100674800	+	0	NA	promoter-TSS (NM_005273)	promoter-TSS (NM_005273)	-140	NM_005273	2783		NM_005273	ENSG00000172354	GNB2	HG2C1|SSS4|SSS4; NEDHYDF	G protein subunit beta 2	protein-coding
217321	chr8	27426151	27426680	+	0	NA	intron (NM_173174, intron 10 of 35)	intron (NM_173174, intron 10 of 35)	-6955	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
82028	chr16	12067551	12068300	+	0	NA	intron (NM_032167, intron 9 of 20)	intron (NM_032167, intron 9 of 20)	91191	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
176231	chr4	86168551	86168650	+	0	NA	intron (NM_002753, intron 3 of 13)	L1PA3|LINE|L1	48794	NR_110879	101929064		NR_110879	ENSG00000250062	MAPK10-AS1	-	MAPK10 antisense RNA 1	ncRNA
149175	chr21	18151601	18152000	+	0	NA	intron (NM_001204176, intron 2 of 6)	MER21A|LTR|ERVL	-93033	NM_024944	140578		NM_024944	ENSG00000154645	CHODL	C21orf68|MT75|PRED12	chondrolectin	protein-coding
14859	chr1	146396851	146397150	+	0	NA	Intergenic	Intergenic	20193	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
52100	chr12	54138371	54138530	+	0	NA	Intergenic	Intergenic	12379	NR_026656	400043		NR_026656	ENSG00000250742	LINC02381	HMS|lncEPAT	long intergenic non-protein coding RNA 2381	ncRNA
134990	chr2	152696301	152696780	+	0	NA	intron (NM_001365600, intron 2 of 25)	intron (NM_001365600, intron 2 of 25)	20921	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
130358	chr2	85017671	85018580	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	46964	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
197790	chr6	87680951	87681350	+	0	NA	intron (NM_018064, intron 2 of 4)	AluSz6|SINE|Alu	21083	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
153530	chr22	26568471	26569450	+	0	NA	intron (NM_001362923, intron 1 of 7)	AluY|SINE|Alu	-3619	NM_001008566	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
97869	chr17	45023021	45023430	+	0	NA	TTS (NM_001288655)	TTS (NM_001288655)	28407	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
169497	chr3	169811921	169813180	+	0	NA	5' UTR (NM_001172779, exon 1 of 11)	5' UTR (NM_001172779, exon 1 of 11)	354	NM_001370609	151827		NM_153353	ENSG00000171757	LRRC34	-	leucine rich repeat containing 34	protein-coding
20460	chr1	198561321	198561580	+	0	NA	Intergenic	Intergenic	-20505	NM_133326	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
20108	chr1	192445751	192446250	+	0	NA	Intergenic	Intergenic	129008	NM_001039152	431704		NM_001039152	ENSG00000253148	RGS21	-	regulator of G protein signaling 21	protein-coding
165389	chr3	94080351	94080980	+	0	NA	intron (NM_022072, intron 2 of 5)	L1PA7|LINE|L1	17604	NM_022072	63899		NM_022072	ENSG00000178694	NSUN3	COXPD48|MST077|MSTP077	NOP2/Sun RNA methyltransferase 3	protein-coding
136443	chr2	176824371	176824730	+	0	NA	Intergenic	Intergenic	186796	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
237373	chrX	119118801	119119100	+	0	NA	intron (NM_020721, intron 3 of 13)	intron (NM_020721, intron 3 of 13)	31629	NM_020721	57481		NM_020721	ENSG00000250423	KIAA1210	-	KIAA1210	protein-coding
125598	chr2	17719551	17719950	+	0	NA	intron (NM_024624, intron 10 of 26)	intron (NM_024624, intron 10 of 26)	34060	NM_001142286	79677		NM_024624	ENSG00000163029	SMC6	SMC-6|SMC6L1|hSMC6	structural maintenance of chromosomes 6	protein-coding
197461	chr6	75243051	75244780	+	0	NA	promoter-TSS (NR_158783)	promoter-TSS (NR_158783)	-114	NR_158784	1347		NM_001865	ENSG00000112695	COX7A2	COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL	cytochrome c oxidase subunit 7A2	protein-coding
172929	chr4	3510501	3511250	+	0	NA	non-coding (NR_110005, exon 8 of 8)	non-coding (NR_110005, exon 8 of 8)	21274	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
167699	chr3	130746051	130747400	+	0	NA	5' UTR (NM_014602, exon 1 of 20)	5' UTR (NM_014602, exon 1 of 20)	104	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
143531	chr20	31567901	31568780	+	0	NA	intron (NM_178580, intron 12 of 12)	intron (NM_178580, intron 12 of 12)	4923	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
204858	chr7	5826201	5826780	+	0	NA	intron (NR_023382, intron 1 of 6)	AluY|SINE|Alu	3330	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
108345	chr18	67265571	67266180	+	0	NA	Intergenic	Intergenic	184291	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
20495	chr1	198649351	198649450	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	10360	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
20801	chr1	201156101	201156330	+	0	NA	intron (NM_001288564, intron 1 of 5)	intron (NM_001288564, intron 1 of 5)	-1660	NM_001288569	252839		NM_016456	ENSG00000116857	TMEM9	DERM4|TMEM9A	transmembrane protein 9	protein-coding
214412	chr7	149824301	149824600	+	0	NA	non-coding (NR_163594, exon 90 of 103)	non-coding (NR_163594, exon 90 of 103)	-13925	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
106556	chr18	21682221	21683100	+	0	NA	promoter-TSS (NR_031565)	promoter-TSS (NR_031565)	-858	NR_031565	100302135		NR_031565	ENSG00000221493	MIR320C1	MIR320C-1|MIRN320C1|hsa-mir-320c-1|mir-320c-1	microRNA 320c-1	ncRNA
108870	chr18	79383771	79384080	+	0	NA	Intergenic	Intergenic	-12005	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
143816	chr20	32477851	32478680	+	0	NA	intron (NM_001256798, intron 4 of 10)	(AC)n|Simple_repeat|Simple_repeat	5225	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
195233	chr6	36235351	36235650	+	0	NA	Intergenic	Intergenic	-7668	NM_001145716	285848		NM_173676	ENSG00000180316	PNPLA1	ARCI10|dJ50J22.1	patatin like phospholipase domain containing 1	protein-coding
6124	chr1	27351571	27352330	+	0	NA	intron (NM_032872, intron 13 of 14)	intron (NM_032872, intron 13 of 14)	9928	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
37060	chr11	12281671	12282160	+	0	NA	Intergenic	Intergenic	-4985	NM_032867	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
86011	chr16	57478701	57479180	+	0	NA	intron (NM_001330556, intron 1 of 6)	intron (NM_001330556, intron 1 of 6)	817	NM_001369621	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
76236	chr15	73965731	73966200	+	0	NA	Intergenic	Intergenic	26330	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
131025	chr2	88054051	88054350	+	0	NA	intron (NM_001304526, intron 1 of 3)	intron (NM_001304526, intron 1 of 3)	1583	NM_016618	51315		NM_016618	ENSG00000172086	KRCC1	CHBP2	lysine rich coiled-coil 1	protein-coding
77433	chr15	84172201	84173500	+	0	NA	intron (NR_166151, intron 1 of 2)	CpG	415	NR_166151	100505679		NM_001243531	ENSG00000290688	UBE2Q2P16	UBE2Q2L	UBE2Q2 pseudogene 16	pseudo
189343	chr5	172183171	172183630	+	0	NA	intron (NM_005990, intron 1 of 18)	intron (NM_005990, intron 1 of 18)	4824	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
34722	chr10	133624801	133625200	+	0	NA	3' UTR (NM_001080998, exon 4 of 4)	3' UTR (NM_001080998, exon 4 of 4)	1795	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
100175	chr17	58632851	58632950	+	0	NA	intron (NM_198393, intron 2 of 32)	LTR71A|LTR|ERV1	59145	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
67547	chr14	71245701	71246200	+	0	NA	Intergenic	Intergenic	-74526	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
189227	chr5	171907651	171908080	+	0	NA	intron (NM_012300, intron 3 of 12)	intron (NM_012300, intron 3 of 12)	98773	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
96139	chr17	39665451	39666230	+	0	NA	exon (NM_003673, exon 2 of 2)	exon (NM_003673, exon 2 of 2)	491	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
123844	chr19	55235471	55235630	+	0	NA	intron (NM_014931, intron 17 of 23)	AluY|SINE|Alu	4426	NR_106860	102465481		NR_106860	ENSG00000278328	MIR6802	hsa-mir-6802	microRNA 6802	ncRNA
181378	chr5	40652121	40653290	+	0	NA	Intergenic	L1PBa|LINE|L1	-27210	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
80313	chr16	2296651	2296800	+	0	NA	intron (NM_001089, intron 17 of 32)	MLT1J|LTR|ERVL-MaLR	22105	NR_039868	100616241		NR_039868	ENSG00000264004	MIR4717	-	microRNA 4717	ncRNA
188937	chr5	160469421	160470000	+	0	NA	intron (NR_132748, intron 1 of 1)	intron (NR_132748, intron 1 of 1)	1459	NR_132748	107075116		NR_132748	ENSG00000253522	MIR3142HG	-	MIR3142 host gene	ncRNA
196106	chr6	42369051	42369150	+	0	NA	intron (NM_033502, intron 2 of 17)	MER5B|DNA|hAT-Charlie	82951	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
37095	chr11	13250001	13250250	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-26527	NM_001351804	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
72540	chr15	34333351	34333450	+	0	NA	intron (NM_133647, intron 1 of 24)	AluSx|SINE|Alu	3444	NM_133647	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
4116	chr1	19318601	19319180	+	0	NA	intron (NR_109848, intron 3 of 9)	L2c|LINE|L2	6564	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
169836	chr3	177170071	177170230	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	26328	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
209154	chr7	75161371	75161530	+	0	NA	intron (NR_003187, intron 7 of 10)	AluSx|SINE|Alu	10548	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
118459	chr19	35874771	35875330	+	0	NA	intron (NM_001024807, intron 10 of 16)	intron (NM_001024807, intron 10 of 16)	6476	NM_001024807	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
134646	chr2	144440751	144441280	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-78599	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
169511	chr3	170006871	170007340	+	0	NA	Intergenic	L2|LINE|L2	-30890	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
32263	chr10	102053351	102054450	+	0	NA	intron (NM_024541, intron 1 of 25)	AluY|SINE|Alu	2273	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
234140	chrX	10077571	10077830	+	0	NA	intron (NM_015691, intron 3 of 22)	intron (NM_015691, intron 3 of 22)	62446	NM_015691	55841		NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
175619	chr4	76090151	76090530	+	0	NA	intron (NM_001377185, intron 3 of 3)	intron (NM_001377185, intron 3 of 3)	15631	NM_001377179	419		NM_001179	ENSG00000156219	ART3	ARTC3	ADP-ribosyltransferase 3 (inactive)	protein-coding
35340	chr11	1124051	1124430	+	0	NA	Intergenic	Intergenic	-33713	NM_001304359	4586		NM_017511	ENSG00000215182	MUC5AC	MUC5|TBM|leB|mucin	mucin 5AC, oligomeric mucus/gel-forming	protein-coding
201245	chr6	144046651	144046950	+	0	NA	intron (NM_001289040, intron 1 of 5)	L1PA6|LINE|L1	8462	NM_001317159	5325		NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
49632	chr12	28217801	28218000	+	0	NA	intron (NM_001352080, intron 2 of 13)	intron (NM_001352080, intron 2 of 13)	-27162	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
102179	chr17	75145851	75146150	+	0	NA	intron (NM_001002032, intron 3 of 3)	AluJb|SINE|Alu	7293	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
232177	chr9	134177251	134178550	+	0	NA	Intergenic	Intergenic	-13336	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
174388	chr4	39042651	39042950	+	0	NA	Intergenic	Intergenic	-2031	NM_001171654	51088		NM_015990	ENSG00000109790	KLHL5	-	kelch like family member 5	protein-coding
194772	chr6	34142571	34142980	+	0	NA	intron (NM_000841, intron 1 of 10)	intron (NM_000841, intron 1 of 10)	3312	NM_000841	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
65416	chr14	50828101	50828380	+	0	NA	intron (NM_020921, intron 2 of 30)	intron (NM_020921, intron 2 of 30)	2881	NM_182946	51199		NM_016350	ENSG00000100503	NIN	SCKL7	ninein	protein-coding
64001	chr14	22491301	22491530	+	0	NA	Intergenic	L1PA2|LINE|L1	-8456	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
189049	chr5	169860651	169860750	+	0	NA	TTS (NM_001346304)	TTS (NM_001346304)	119795	NM_001346304	100131897		NM_001129891	ENSG00000204767	INSYN2B	C5orf57|FAM196B	inhibitory synaptic factor family member 2B	protein-coding
181901	chr5	54610151	54611130	+	0	NA	Intergenic	Intergenic	92684	NR_104659	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
53293	chr12	64450051	64451250	+	0	NA	3' UTR (NM_007235, exon 25 of 25)	3' UTR (NM_007235, exon 25 of 25)	-1470	NM_013254	29110		NM_013254	ENSG00000183735	TBK1	FTDALS4|IIAE8|NAK|T2K	TANK binding kinase 1	protein-coding
137972	chr2	201191001	201192280	+	0	NA	intron (NM_001230, intron 3 of 7)	intron (NM_001230, intron 3 of 7)	8499	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
146341	chr20	49242001	49242400	+	0	NA	exon (NM_001348187, exon 19 of 22)	exon (NM_001348187, exon 19 of 22)	22784	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
57758	chr12	122978301	122978500	+	0	NA	5' UTR (NM_001304834, exon 6 of 8)	5' UTR (NM_001304834, exon 6 of 8)	-1660	NM_001002252	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
69064	chr14	91911471	91911930	+	0	NA	intron (NM_001384161, intron 5 of 12)	MIR3|SINE|MIR	35332	NM_001384159	10516		NM_006329	ENSG00000140092	FBLN5	ADCL2|ARCL1A|ARMD3|CMT1H|DANCE|EVEC|FIBL-5|HNARMD|UP50	fibulin 5	protein-coding
38007	chr11	35079551	35079850	+	0	NA	Intergenic	Intergenic	58332	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
207274	chr7	43976751	43977050	+	0	NA	intron (NR_003655, intron 7 of 15)	intron (NR_003655, intron 7 of 15)	-20968	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
110724	chr19	2316951	2317050	+	0	NA	Intergenic	(TCCCC)n|Simple_repeat|Simple_repeat	-8846	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
9833	chr1	54081471	54081990	+	0	NA	intron (NM_153035, intron 3 of 4)	intron (NM_153035, intron 3 of 4)	27651	NR_039942	100616315		NR_039942	ENSG00000283749	MIR4781	mir-4781	microRNA 4781	ncRNA
156340	chr22	40732601	40733080	+	0	NA	Intergenic	L2b|LINE|L2	53356	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
128433	chr2	55419161	55420700	+	0	NA	promoter-TSS (NM_001135597)	promoter-TSS (NM_001135597)	-74	NM_001365480	55704		NM_018084	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL	coiled-coil domain containing 88A	protein-coding
156875	chr22	42089751	42092150	+	0	NA	promoter-TSS (NM_002490).2	promoter-TSS (NM_002490).2	17	NR_034118	100132273		NR_034118	ENSG00000237037	NDUFA6-DT	NDUFA6-AS1	NDUFA6 divergent transcript	ncRNA
181651	chr5	50383971	50384330	+	0	NA	Intergenic	L1MB1|LINE|L1	57138	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
215848	chr8	7155771	7155930	+	0	NA	Intergenic	HERVK11-int|LTR|ERVK	72338	NR_168401	101928095		NR_168401		LOC101928095	-	uncharacterized LOC101928095	ncRNA
189192	chr5	171422271	171422450	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	2713	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
21594	chr1	206544601	206545400	+	0	NA	intron (NM_182663, intron 2 of 5)	intron (NM_182663, intron 2 of 5)	-12164	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
75164	chr15	64640621	64641080	+	0	NA	intron (NM_015042, intron 3 of 9)	intron (NM_015042, intron 3 of 9)	62431	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
39941	chr11	62548051	62548600	+	0	NA	Intergenic	Intergenic	-1519	NM_001620	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
212745	chr7	129917071	129917230	+	0	NA	intron (NM_001202498, intron 1 of 6)	AluSc|SINE|Alu	35810	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
15511	chr1	150484421	150484680	+	0	NA	Intergenic	Intergenic	-2869	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
165083	chr3	71482851	71483150	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluJo|SINE|Alu	59089	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
34214	chr10	129877871	129878050	+	0	NA	intron (NM_001375379, intron 6 of 15)	intron (NM_001375379, intron 6 of 15)	-34586	NR_036179	100422873		NR_036179	ENSG00000266676	MIR4297	-	microRNA 4297	ncRNA
237079	chrX	103685171	103685630	+	0	NA	intron (NM_001142421, intron 1 of 3)	intron (NM_001142421, intron 1 of 3)	1299	NM_012286	9643		NM_012286	ENSG00000123562	MORF4L2	MORFL2|MRGX	mortality factor 4 like 2	protein-coding
11519	chr1	90969121	90969580	+	0	NA	intron (NM_201269, intron 2 of 5)	MLT1B|LTR|ERVL-MaLR	52158	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
60372	chr13	40932471	40932850	+	0	NA	3' UTR (NM_001145353, exon 8 of 8)	3' UTR (NM_001145353, exon 8 of 8)	-10886	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
107077	chr18	34975501	34975980	+	0	NA	Intergenic	MIRb|SINE|MIR	-1188	NM_001143826	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
147255	chr20	57427751	57428250	+	0	NA	Intergenic	Intergenic	-34944	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
225189	chr9	34044971	34045680	+	0	NA	intron (NM_001370059, intron 1 of 28)	AluY|SINE|Alu	3562	NM_001370064	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
164485	chr3	60008271	60008630	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	72459	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
4323	chr1	20483901	20484530	+	0	NA	intron (NM_018584, intron 1 of 1)	CpG	1995	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
33105	chr10	110980101	110980300	+	0	NA	intron (NM_001269039, intron 2 of 7)	AluY|SINE|Alu	-8726	NR_031614	100313921		NR_031614	ENSG00000221214	MIR548E	MIRN548E|hsa-mir-548e	microRNA 548e	ncRNA
168008	chr3	136857401	136857800	+	0	NA	intron (NR_110177, intron 1 of 2)	L1MEf|LINE|L1	4463	NR_110177	101927597		NR_110175		NCK1-DT	NCK1-AS1|SLC35G2-AS1	NCK1 divergent transcript	ncRNA
213594	chr7	139384821	139385280	+	0	NA	intron (NM_016019, intron 2 of 9)	intron (NM_016019, intron 2 of 9)	25156	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
40818	chr11	64925901	64927600	+	0	NA	exon (NM_006244, exon 3 of 14)	exon (NM_006244, exon 3 of 14)	2061	NM_006244	5526		NM_006244	ENSG00000068971	PPP2R5B	B56B|B56beta|PR61B	protein phosphatase 2 regulatory subunit B'beta	protein-coding
60901	chr13	46163721	46164230	+	0	NA	intron (NM_002298, intron 1 of 15)	intron (NM_002298, intron 1 of 15)	18202	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
74424	chr15	59121821	59122080	+	0	NA	intron (NM_004701, intron 7 of 8)	AluSz6|SINE|Alu	16804	NM_004701	9133		NM_004701	ENSG00000157456	CCNB2	HsT17299	cyclin B2	protein-coding
184250	chr5	96687621	96688100	+	0	NA	intron (NM_001375317, intron 2 of 30)	intron (NM_001375317, intron 2 of 30)	-14800	NM_001042446	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
18846	chr1	167711871	167712500	+	0	NA	Intergenic	AluJb|SINE|Alu	-9797	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
130671	chr2	86368071	86368730	+	0	NA	Intergenic	Intergenic	-30317	NM_001164730	65055		NM_022912	ENSG00000068615	REEP1	C2orf23|DSMA6|HMN5B|HMND12|HMNR6|SPG31|Yip2a	receptor accessory protein 1	protein-coding
36756	chr11	9362371	9363230	+	0	NA	Intergenic	Intergenic	-21852	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
111526	chr19	4014701	4016430	+	0	NA	intron (NM_015897, intron 2 of 10)	intron (NM_015897, intron 2 of 10)	7829	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
33498	chr10	119132751	119132850	+	0	NA	intron (NM_207009, intron 8 of 8)	intron (NM_207009, intron 8 of 8)	28687	NM_001303111	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
164618	chr3	66380501	66380700	+	0	NA	exon (NM_001377349, exon 11 of 12)	exon (NM_001377349, exon 11 of 12)	25167	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
125566	chr2	16142301	16142980	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	92213	NR_126559	104797537		NR_126559	ENSG00000236289	GACAT3	LINC01458|lncRNA-AC130710	gastric cancer associated transcript 3	ncRNA
170925	chr3	194269701	194270030	+	0	NA	Intergenic	CpG	-19712	NR_125403	100505920		NR_125403		LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
127722	chr2	43483021	43483280	+	0	NA	intron (NR_144316, intron 26 of 36)	MamRTE1|LINE|RTE-BovB	112824	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
79820	chr16	1420501	1422080	+	0	NA	promoter-TSS (NM_001272051)	promoter-TSS (NM_001272051)	-543	NM_001272051	283951		NM_001010878	ENSG00000174109	UQCC4	C16orf91|CCSMST1|URLC5|gs103	ubiquinol-cytochrome c reductase complex assembly factor 4	protein-coding
92194	chr17	7839221	7839490	+	0	NA	promoter-TSS (NM_001080424)	promoter-TSS (NM_001080424)	-551	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
2072	chr1	7933951	7934450	+	0	NA	intron (NM_001561, intron 6 of 7)	AluJo|SINE|Alu	6639	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
172194	chr4	1247511	1250430	+	0	NA	promoter-TSS (NM_001377188)	promoter-TSS (NM_001377188)	160	NM_001377187	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
39778	chr11	61920301	61920530	+	0	NA	promoter-TSS (NM_001271686)	promoter-TSS (NM_001271686)	-131	NM_001271686	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
183730	chr5	81105171	81105530	+	0	NA	intron (NM_006909, intron 12 of 26)	intron (NM_006909, intron 12 of 26)	-127970	NM_001099736	1160		NM_001825	ENSG00000131730	CKMT2	SMTCK	creatine kinase, mitochondrial 2	protein-coding
40111	chr11	62813521	62813850	+	0	NA	intron (NM_001244666, intron 10 of 10)	intron (NM_001244666, intron 10 of 10)	-8245	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
223829	chr8	144934651	144934750	+	0	NA	intron (NM_006958, intron 2 of 2)	intron (NM_006958, intron 2 of 2)	16180	NM_006958	7564		NM_006958	ENSG00000170631	ZNF16	HZF1|KOX9	zinc finger protein 16	protein-coding
110623	chr19	2210721	2210980	+	0	NA	exon (NM_032482, exon 14 of 28)	exon (NM_032482, exon 14 of 28)	23299	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
90282	chr17	1007521	1007980	+	0	NA	intron (NM_001282149, intron 16 of 17).3	MIR|SINE|MIR	10621	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
134679	chr2	144476571	144476730	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-42964	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
204677	chr7	5496221	5496480	+	0	NA	promoter-TSS (NR_030318)	promoter-TSS (NR_030318)	-433	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
30381	chr10	78041051	78041880	+	0	NA	TTS (NM_001026)	TTS (NM_001026)	7602	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
34655	chr10	133333021	133333300	+	0	NA	intron (NM_015722, intron 1 of 5)	intron (NM_015722, intron 1 of 5)	3736	NM_015722	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
476	chr1	1157071	1158930	+	0	NA	Intergenic	CpG	-9104	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
51885	chr12	53504621	53505180	+	0	NA	intron (NM_134323, intron 6 of 8)	intron (NM_134323, intron 6 of 8)	2584	NM_001320296	8620		NM_003717	ENSG00000139574	NPFF	FMRFAL	neuropeptide FF-amide peptide precursor	protein-coding
36083	chr11	2995571	2995730	+	0	NA	Intergenic	Intergenic	-3321	NM_001369375	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
179956	chr5	784401	786350	+	0	NA	promoter-TSS (NR_147096)	promoter-TSS (NR_147096)	-646	NM_001351303	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
124342	chr19	58310421	58311280	+	0	NA	intron (NR_144445, intron 2 of 3)	LTR13|LTR|ERVK	5476	NR_144445	105372481		NM_001396080	ENSG00000142396	ERVK3-1	-	endogenous retrovirus group K3 member 1	protein-coding
217545	chr8	29330051	29330350	+	0	NA	Intergenic	MER4A1_|LTR|ERV1	18605	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
8926	chr1	44005571	44006180	+	0	NA	intron (NR_048548, intron 4 of 12)	intron (NR_048548, intron 4 of 12)	11288	NM_201649	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
40450	chr11	64210801	64211000	+	0	NA	intron (NM_001382363, intron 2 of 13)	intron (NM_001382363, intron 2 of 13)	3194	NM_001382364	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
39258	chr11	57736651	57736750	+	0	NA	intron (NM_001347891, intron 2 of 7)	AluSx|SINE|Alu	-4550	NM_001321335	280636		NM_170746	ENSG00000211450	SELENOH	C11orf31|C17orf10|SELH	selenoprotein H	protein-coding
96906	chr17	42128351	42128850	+	0	NA	intron (NM_004583, intron 3 of 5)	intron (NM_004583, intron 3 of 5)	5796	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
24973	chr10	3061501	3061950	+	0	NA	intron (NR_160681, intron 1 of 3)	LTR5_Hs|LTR|ERVK	5208	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
80235	chr16	2193851	2194200	+	0	NA	intron (NM_020764, intron 1 of 19)	intron (NM_020764, intron 1 of 19)	2580	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
63441	chr13	114109371	114109970	+	0	NA	intron (NM_001320821, intron 1 of 25).2	MIRb|SINE|MIR	22953	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
167970	chr3	136694151	136694680	+	0	NA	intron (NM_005862, intron 1 of 33)	AluJr|SINE|Alu	57963	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
122522	chr19	49620671	49621030	+	0	NA	intron (NM_020719, intron 10 of 13)	MSR1|Satellite|Satellite	19293	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
37325	chr11	14822401	14822600	+	0	NA	intron (NM_001363569, intron 7 of 15)	L1PA13|LINE|L1	69171	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
9255	chr1	46204351	46204650	+	0	NA	intron (NM_001013615, intron 1 of 1)	intron (NM_001013615, intron 1 of 1)	1166	NM_001013615	541468		NM_001013615	ENSG00000171357	LURAP1	C1orf190|LRAP35a|LRP35A	leucine rich adaptor protein 1	protein-coding
166265	chr3	112464371	112465200	+	0	NA	3' UTR (NM_181780, exon 5 of 5)	3' UTR (NM_181780, exon 5 of 5)	34687	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
108521	chr18	74342471	74342700	+	0	NA	intron (NM_001174123, intron 10 of 13)	intron (NM_001174123, intron 10 of 13)	26746	NM_001174123	644041		NM_001174123	ENSG00000206043	C18orf63	DKFZP781G0119	chromosome 18 open reading frame 63	protein-coding
218020	chr8	38601151	38601330	+	0	NA	promoter-TSS (NR_003129)	promoter-TSS (NR_003129)	17	NR_003129	286140		NR_003129		RNF5P1	-	ring finger protein 5 pseudogene 1	pseudo
37473	chr11	18334021	18334450	+	0	NA	intron (NM_001142307, intron 3 of 15)	AluY|SINE|Alu	11668	NM_005316	2965		NM_005316	ENSG00000110768	GTF2H1	BTF2|P62|TFB1|TFIIH	general transcription factor IIH subunit 1	protein-coding
179606	chr4	185470501	185472230	+	0	NA	promoter-TSS (NR_133944)	promoter-TSS (NR_133944)	-66	NR_133944	105377590		NR_133944		LOC105377590	-	uncharacterized LOC105377590	ncRNA
211574	chr7	105688871	105689030	+	0	NA	intron (NM_001385596, intron 3 of 11)	intron (NM_001385596, intron 3 of 11)	-9788	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
36276	chr11	3799601	3799800	+	0	NA	intron (NR_027017, intron 1 of 7)	AluJb|SINE|Alu	1802	NM_001346401	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
197338	chr6	73421971	73423180	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	27747	NM_018665	55510		NM_018665	ENSG00000080007	DDX43	CT13|HAGE	DEAD-box helicase 43	protein-coding
57278	chr12	121631971	121632480	+	0	NA	intron (NM_032790, intron 2 of 2)	intron (NM_032790, intron 2 of 2)	5675	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
20286	chr1	197096251	197096350	+	0	NA	intron (NM_001206846, intron 17 of 26)	intron (NM_001206846, intron 17 of 26)	-29040	NM_001994	2165		NM_001994	ENSG00000143278	F13B	FXIIIB	coagulation factor XIII B chain	protein-coding
82398	chr16	16152101	16152500	+	0	NA	intron (NR_147784, intron 27 of 28)	intron (NR_147784, intron 27 of 28)	71171	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
146847	chr20	51428301	51428500	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	24577	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
116362	chr19	17875801	17876380	+	0	NA	exon (NM_000453, exon 5 of 15)	exon (NM_000453, exon 5 of 15)	4145	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
202968	chr6	161262321	161262580	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	11611	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
97520	chr17	43994401	43995380	+	0	NA	intron (NM_004160, intron 1 of 6)	CpG	9555	NM_004160	5697		NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
59453	chr13	25959151	25959480	+	0	NA	intron (NM_016529, intron 33 of 36)	intron (NM_016529, intron 33 of 36)	92701	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
83662	chr16	28330071	28330430	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	32610	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
84812	chr16	31076571	31076930	+	0	NA	exon (NM_014699, exon 2 of 3)	exon (NM_014699, exon 2 of 3)	2328	NM_014699	9726		NM_014699	ENSG00000167395	ZNF646	-	zinc finger protein 646	protein-coding
235278	chrX	41906971	41907130	+	0	NA	intron (NM_001126055, intron 1 of 24)	intron (NM_001126055, intron 1 of 24)	15984	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
183366	chr5	77181071	77181430	+	0	NA	intron (NM_001376066, intron 1 of 20)	intron (NM_001376066, intron 1 of 20)	946	NM_001376071	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
20073	chr1	186272571	186272730	+	0	NA	Intergenic	Intergenic	-23623	NM_001127709	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
13546	chr1	115098651	115100180	+	0	NA	Intergenic	Intergenic	-9912	NM_005725	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
205751	chr7	23509471	23510530	+	0	NA	intron (NM_001362759, intron 3 of 6)	AluSz|SINE|Alu	19612	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
17744	chr1	158992701	158993100	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-7076	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
27637	chr10	32953101	32954600	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	4044	NM_133376	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
26902	chr10	26445321	26445600	+	0	NA	intron (NM_019043, intron 2 of 14)	AluJo|SINE|Alu	7119	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
2115	chr1	8159051	8159300	+	0	NA	Intergenic	MLT2C2|LTR|ERVL	-49497	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
4450	chr1	21330821	21331080	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	14554	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
43694	chr11	85947221	85947480	+	0	NA	Intergenic	Intergenic	91967	NM_001286159	220047		NM_173556	ENSG00000150676	CCDC83	CT148|HSD9|KP-CoT-23	coiled-coil domain containing 83	protein-coding
49415	chr12	22631601	22632530	+	0	NA	intron (NM_001039481, intron 1 of 2)	intron (NM_001039481, intron 1 of 2)	6894	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
107226	chr18	36462271	36462830	+	0	NA	intron (NM_001281739, intron 3 of 23)	AluY|SINE|Alu	164837	NM_025135	80206		NM_025135	ENSG00000134775	FHOD3	CMH28|FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
69998	chr14	100061951	100062050	+	0	NA	intron (NM_001330221, intron 1 of 13)	FRAM|SINE|Alu	-3422	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
210776	chr7	100708171	100708850	+	0	NA	Intergenic	AluJr|SINE|Alu	2389	NM_005837	10248		NM_005837	ENSG00000172336	POP7	0610037N12Rik|RPP2|RPP20	POP7 homolog, ribonuclease P/MRP subunit	protein-coding
26371	chr10	16441651	16441950	+	0	NA	intron (NM_001261837, intron 2 of 4)	intron (NM_001261837, intron 2 of 4)	4857	NM_001001484	9317		NM_030664	ENSG00000165983	PTER	HPHRP|RPR-1	phosphotriesterase related	protein-coding
79738	chr16	1335071	1335480	+	0	NA	promoter-TSS (NM_001199096)	promoter-TSS (NM_001199096)	771	NM_003933	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
103708	chr17	78824971	78826200	+	0	NA	intron (NR_169583, intron 6 of 22)	intron (NR_169583, intron 6 of 22)	15229	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
105032	chr17	82055451	82056150	+	0	NA	exon (NM_004127, exon 7 of 13)	exon (NM_004127, exon 7 of 13)	3902	NM_212492	2873		NM_004127	ENSG00000169727	GPS1	COPS1|CSN1|SGN1	G protein pathway suppressor 1	protein-coding
146525	chr20	49936041	49937830	+	0	NA	intron (NM_018683, intron 1 of 5)	CpG	538	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
226490	chr9	71762221	71763250	+	0	NA	intron (NM_001135820, intron 1 of 22)	AluJb|SINE|Alu	5778	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
202996	chr6	162829951	162830050	+	0	NA	intron (NM_001080378, intron 3 of 5)	intron (NM_001080378, intron 3 of 5)	102030	NM_001080379	135138		NM_152410	ENSG00000112530	PACRG	BUG21|GLUP|HAK005771|PACRG2.1|PARK2CRG|pf12	parkin coregulated	protein-coding
66802	chr14	64722651	64723300	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	18551	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
127895	chr2	46226771	46226930	+	0	NA	Intergenic	L1ME4b|LINE|L1	-70557	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
81552	chr16	9116751	9117130	+	0	NA	3' UTR (NM_014117, exon 4 of 4)	3' UTR (NM_014117, exon 4 of 4)	25296	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
3600	chr1	16239721	16240650	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-3002	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
5335	chr1	25252601	25252880	+	0	NA	intron (NR_135788, intron 1 of 3)	AluSq2|SINE|Alu	-5221	NR_135143	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
5283	chr1	25100201	25100880	+	0	NA	Intergenic	Intergenic	77037	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
224943	chr9	33034751	33035800	+	0	NA	intron (NM_001314039, intron 5 of 7)	AluSq2|SINE|Alu	10002	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
23210	chr1	227560621	227561530	+	0	NA	Intergenic	CpG	-2481	NM_001367909	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
219917	chr8	86338201	86338980	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3957	NM_007013	11059		NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
82156	chr16	14840921	14841250	+	0	NA	intron (NM_014287, intron 2 of 30)	intron (NM_014287, intron 2 of 30)	7364	NM_014287	23420		NM_014287	ENSG00000103512	NOMO1	Nomo|PM5	NODAL modulator 1	protein-coding
29898	chr10	73126671	73126830	+	0	NA	promoter-TSS (NR_145776)	promoter-TSS (NR_145776)	-543	NR_145776	109617000		NR_145776	ENSG00000221164	SNORA11F	-	small nucleolar RNA, H/ACA box 11F	snoRNA
173225	chr4	6912151	6912250	+	0	NA	intron (NM_020773, intron 1 of 13)	AluSc|SINE|Alu	2374	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
96337	chr17	40053971	40054930	+	0	NA	promoter-TSS (NM_001267797)	promoter-TSS (NM_001267797)	-42	NR_052017	9862		NM_014815	ENSG00000008838	MED24	ARC100|CRSP100|CRSP4|DRIP100|MED5|THRAP4|TRAP100	mediator complex subunit 24	protein-coding
183398	chr5	77794521	77794850	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-18324	NM_001297740	6902		NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
29191	chr10	68967821	68968480	+	0	NA	intron (NM_004728, intron 6 of 14)	AluJb|SINE|Alu	11710	NM_001256910	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
79569	chr16	984871	985680	+	0	NA	exon (NM_014587, exon 3 of 3)	exon (NM_014587, exon 3 of 3)	3505	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
164992	chr3	71345301	71345530	+	0	NA	intron (NM_001349340, intron 3 of 19)	(AC)n|Simple_repeat|Simple_repeat	-40644	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
237046	chrX	103252651	103252950	+	0	NA	TTS (NM_153333)	TTS (NM_153333)	2355	NM_153333	90843		NM_153333	ENSG00000180964	TCEAL8	WEX3	transcription elongation factor A like 8	protein-coding
81044	chr16	4311351	4311930	+	0	NA	Intergenic	Intergenic	-3121	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
97671	chr17	44220601	44223450	+	0	NA	promoter-TSS (NR_045058)	promoter-TSS (NR_045058)	-721	NR_045058	7343		NM_014233	ENSG00000108312	UBTF	CONDBA|NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor	protein-coding
226761	chr9	76423651	76424150	+	0	NA	Intergenic	Intergenic	-17766	NM_001097634	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
168464	chr3	143047301	143047500	+	0	NA	intron (NM_001080415, intron 24 of 27)	SVA_F|Retroposon|SVA	45830	NM_001320222	23350		NM_001080415	ENSG00000163714	U2SURP	SR140|fSAPa	U2 snRNP associated SURP domain containing	protein-coding
64873	chr14	35332071	35332500	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	39903	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
42893	chr11	73365671	73366800	+	0	NA	intron (NM_014786, intron 20 of 20)	intron (NM_014786, intron 20 of 20)	-10164	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
216963	chr8	23015501	23016300	+	0	NA	intron (NM_015178, intron 9 of 9)	intron (NM_015178, intron 9 of 9)	16352	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
192590	chr6	25967401	25967600	+	0	NA	intron (NM_006355, intron 3 of 7)	intron (NM_006355, intron 3 of 7)	4698	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
42922	chr11	73395001	73396300	+	0	NA	3' UTR (NM_032871, exon 11 of 11)	3' UTR (NM_032871, exon 11 of 11)	18982	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
190416	chr5	179824971	179825230	+	0	NA	intron (NM_003900, intron 4 of 7).2	intron (NM_003900, intron 4 of 7).2	4195	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
233405	chr9	137567651	137567750	+	0	NA	intron (NM_001346386, intron 4 of 7)	intron (NM_001346386, intron 4 of 7)	10892	NM_001346373	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
135937	chr2	171924951	171925450	+	0	NA	intron (NR_027862, intron 1 of 9)	AluSg4|SINE|Alu	2739	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
86640	chr16	67442721	67442980	+	0	NA	intron (NM_004691, intron 4 of 7)	intron (NM_004691, intron 4 of 7)	11729	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
205939	chr7	25967221	25967550	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-17399	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
217827	chr8	37328471	37328630	+	0	NA	Intergenic	Intergenic	165363	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
41431	chr11	66065801	66066000	+	0	NA	intron (NM_006842, intron 19 of 21)	AluSx|SINE|Alu	-4372	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
45439	chr11	118434101	118435090	+	0	NA	Intergenic	Intergenic	-1897	NM_001197104	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
10700	chr1	75203771	75203930	+	0	NA	TTS (NM_001320283)	TTS (NM_001320283)	69462	NM_001256114	431707		NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
124193	chr19	56301671	56302280	+	0	NA	exon (NM_001354658, exon 9 of 11)	exon (NM_001354658, exon 9 of 11)	12589	NM_001322066	79149		NM_024303	ENSG00000131848	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
189076	chr5	170280351	170280650	+	0	NA	intron (NM_005565, intron 3 of 20)	intron (NM_005565, intron 3 of 20)	17277	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
44583	chr11	108249421	108250050	+	0	NA	intron (NM_000051, intron 9 of 62)	intron (NM_000051, intron 9 of 62)	26206	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
214741	chr7	151052071	151052330	+	0	NA	exon (NM_004769, exon 9 of 11)	exon (NM_004769, exon 9 of 11)	3669	NM_004769	9311		NM_004769	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid sensing ion channel subunit 3	protein-coding
159147	chr3	12665471	12666830	+	0	NA	Intergenic	Intergenic	-2033	NM_002880	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
162481	chr3	48559651	48560200	+	0	NA	intron (NM_001317136, intron 1 of 13)	(CA)n|Simple_repeat|Simple_repeat	1204	NM_001317136	5210		NM_004567	ENSG00000114268	PFKFB4	-	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding
102146	chr17	75096221	75096580	+	0	NA	intron (NM_001369668, intron 2 of 5)	intron (NM_001369668, intron 2 of 5)	8446	NM_004695	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
202640	chr6	158760901	158762180	+	0	NA	intron (NM_001318745, intron 12 of 14)	AluY|SINE|Alu	3213	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
153362	chr22	24432021	24432650	+	0	NA	non-coding (NR_028484, exon 5 of 7)	non-coding (NR_028484, exon 5 of 7)	216	NM_001278497	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
81756	chr16	11493451	11494500	+	0	NA	intron (NM_001370704, intron 11 of 66)	CpG	28715	NR_110907	101927131		NR_110907	ENSG00000262999	LOC101927131	-	uncharacterized LOC101927131	ncRNA
39035	chr11	47765901	47769000	+	0	NA	promoter-TSS (NM_001318339)	promoter-TSS (NM_001318339)	-109	NM_001318339	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
80058	chr16	1976051	1976150	+	0	NA	exon (NM_006453, exon 12 of 22)	exon (NM_006453, exon 12 of 22)	4047	NM_006453	10607		NM_006453	ENSG00000183751	TBL3	SAZD|UTP13	transducin beta like 3	protein-coding
152604	chr22	21401201	21401400	+	0	NA	Intergenic	Intergenic	-16071	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
188630	chr5	157216001	157216300	+	0	NA	intron (NM_005546, intron 4 of 16)	intron (NM_005546, intron 4 of 16)	35310	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
5556	chr1	25893321	25893580	+	0	NA	intron (NM_001145454, intron 4 of 4)	intron (NM_001145454, intron 4 of 4)	12703	NM_203401	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
111895	chr19	4674721	4675930	+	0	NA	TTS (NM_001384623)	TTS (NM_001384623)	-3957	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
151815	chr22	18346071	18346430	+	0	NA	Intergenic	Intergenic	40306	NR_136569	729461		NM_201401	ENSG00000274044	FAM230J	LINC01660	family with sequence similarity 230 member J	ncRNA
123434	chr19	54122351	54122650	+	0	NA	exon (NM_015629, exon 5 of 14)	exon (NM_015629, exon 5 of 14)	6746	NM_015629	26121		NM_015629	ENSG00000105618	PRPF31	NY-BR-99|PRP31|RP11|SNRNP61	pre-mRNA processing factor 31	protein-coding
79493	chr16	779671	779830	+	0	NA	Intergenic	Intergenic	8631	NM_001369658	113000		NM_058192	ENSG00000007376	RPUSD1	C16orf40|RLUCL	RNA pseudouridine synthase domain containing 1	protein-coding
169446	chr3	166026551	166026650	+	0	NA	Intergenic	L1PA3|LINE|L1	-189177	NR_137635	590		NM_000055	ENSG00000114200	BCHE	BCHED|CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
165632	chr3	101769051	101769880	+	0	NA	3' UTR (NM_001303401, exon 11 of 11)	3' UTR (NM_001303401, exon 11 of 11)	-9746	NM_001348993	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
60862	chr13	45786421	45786680	+	0	NA	intron (NM_198849, intron 1 of 1)	intron (NM_198849, intron 1 of 1)	65203	NM_198849	283514		NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
105298	chr17	82511271	82511430	+	0	NA	Intergenic	MER51A|LTR|ERV1	-8382	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
158885	chr3	9894351	9894680	+	0	NA	TTS (NM_032492)	TTS (NM_032492)	3905	NM_001363890	84522		NM_032492	ENSG00000171135	JAGN1	GL009|SCN6	jagunal homolog 1	protein-coding
126256	chr2	27095871	27096580	+	0	NA	intron (NM_006488, intron 3 of 7)	intron (NM_006488, intron 3 of 7)	9453	NM_000221	3795		NM_000221	ENSG00000138030	KHK	FRUCTU	ketohexokinase	protein-coding
152954	chr22	22928501	22929480	+	0	NA	Intergenic	Intergenic	41174	NM_001178126	100423062		NM_001178126	ENSG00000254709	IGLL5	IGL|IGLV|VL-MAR	immunoglobulin lambda like polypeptide 5	protein-coding
3006	chr1	12062701	12063900	+	0	NA	promoter-TSS (NM_001243)	promoter-TSS (NM_001243)	-3	NM_001243	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
133245	chr2	113255201	113255880	+	0	NA	non-coding (NR_015377, exon 3 of 6)	non-coding (NR_015377, exon 3 of 6)	19271	NR_015377	654433		NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
26679	chr10	22623251	22623900	+	0	NA	intron (NM_005028, intron 1 of 9)	Charlie7|DNA|hAT-Charlie	90533	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
56987	chr12	120557271	120557630	+	0	NA	exon (NM_014868, exon 5 of 17)	exon (NM_014868, exon 5 of 17)	23094	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
109181	chr19	348071	348480	+	0	NA	Intergenic	Intergenic	-3434	NM_017550	54531		NM_017550	ENSG00000105556	MIER2	KIAA1193|Mi-er2	MIER family member 2	protein-coding
73773	chr15	45611301	45611700	+	0	NA	Intergenic	Intergenic	-19648	NM_001271213	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
192329	chr6	22146051	22146550	+	0	NA	intron (NR_034143, intron 2 of 2)	intron (NR_034143, intron 2 of 2)	893	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
134697	chr2	144492301	144492630	+	0	NA	intron (NM_014795, intron 2 of 9)	MIRb|SINE|MIR	-27149	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
150180	chr21	39249851	39249950	+	0	NA	intron (NM_033656, intron 20 of 40)	L1MEg|LINE|L1	63732	NM_033656	54014		NM_018963	ENSG00000185658	BRWD1	C21orf107|CILD51|DCAF19|N143|WDR9|WRD9	bromodomain and WD repeat domain containing 1	protein-coding
221827	chr8	128065571	128065730	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	16498	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
204699	chr7	5516971	5517130	+	0	NA	intron (NR_126168, intron 1 of 3)	AluY|SINE|Alu	3196	NR_126168	221946		NR_126168		LOC221946	-	uncharacterized LOC221946	ncRNA
152703	chr22	21636751	21637050	+	0	NA	exon (NM_152612, exon 5 of 5)	exon (NM_152612, exon 5 of 5)	4103	NM_001331066	164592		NM_152612	ENSG00000161180	CCDC116	-	coiled-coil domain containing 116	protein-coding
84958	chr16	31386271	31386920	+	0	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-6740	NM_005353	3681		NM_005353	ENSG00000156886	ITGAD	ADB2|CD11D	integrin subunit alpha D	protein-coding
215867	chr8	7536571	7537280	+	0	NA	Intergenic	Intergenic	-2702	NM_001282479	100131608		NM_001282479	ENSG00000255251	PRR23D1	PRR23D2	proline rich 23 domain containing 1	protein-coding
40617	chr11	64687651	64687750	+	0	NA	intron (NM_138732, intron 4 of 19)	intron (NM_138732, intron 4 of 19)	35497	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
30689	chr10	80522471	80523750	+	0	NA	TTS (NM_001351267)	TTS (NM_001351267)	12832	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
136833	chr2	183032851	183033150	+	0	NA	intron (NM_205842, intron 1 of 31)	AluJb|SINE|Alu	5457	NM_013436	10787		NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125|p125Nap1	NCK associated protein 1	protein-coding
167858	chr3	134294071	134294700	+	0	NA	Intergenic	Intergenic	-19191	NR_146711	105374119		NR_146711	ENSG00000240006	LINC02004	-	long intergenic non-protein coding RNA 2004	ncRNA
148509	chr20	64085121	64085380	+	0	NA	promoter-TSS (NM_001007125)	promoter-TSS (NM_001007125)	251	NM_001200019	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
16795	chr1	155547601	155548000	+	0	NA	intron (NM_018489, intron 1 of 27)	AluYh3|SINE|Alu	-14242	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
2746	chr1	10675471	10676480	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	120671	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
46396	chr11	126311451	126311700	+	0	NA	intron (NM_014026, intron 2 of 5)	L2b|LINE|L2	7515	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
212469	chr7	128478151	128478450	+	0	NA	intron (NM_018396, intron 2 of 8)	AluSc|SINE|Alu	1552	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
3496	chr1	16028121	16029030	+	0	NA	intron (NM_004070, intron 10 of 19)	intron (NM_004070, intron 10 of 19)	6539	NM_001257139	1187		NM_004070	ENSG00000186510	CLCNKA	CLCK1|ClC-K1|hClC-Ka	chloride voltage-gated channel Ka	protein-coding
194549	chr6	33326301	33326500	+	0	NA	intron (NM_001369203, intron 1 of 2).4	AluSx3|SINE|Alu	2879	NM_001369203	113523636		NM_001369203	ENSG00000286920	SMIM40	-	small integral membrane protein 40	protein-coding
218593	chr8	55885571	55885850	+	0	NA	intron (NM_002350, intron 1 of 12)	intron (NM_002350, intron 1 of 12)	5875	NM_001111097	4067		NM_002350	ENSG00000254087	LYN	JTK8|SAIDV|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
140181	chr2	231663371	231663530	+	0	NA	Intergenic	Intergenic	-45075	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
16760	chr1	155329121	155329380	+	0	NA	intron (NM_014328, intron 8 of 8)	AluSz6|SINE|Alu	4743	NM_001278230	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
27720	chr10	33743601	33743800	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	28980	NR_038932	100505583		NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
207618	chr7	44994771	44995130	+	0	NA	Intergenic	MER90a|LTR|ERV1	-4796	NR_030770	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
90966	chr17	2691621	2692200	+	0	NA	TTS (NR_106834)	TTS (NR_106834)	1009	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
50519	chr12	47831251	47831550	+	0	NA	Intergenic	L1M5|LINE|L1	-11497	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
190325	chr5	179620121	179620690	+	0	NA	intron (NM_001364248, intron 4 of 12).2	intron (NM_001364248, intron 4 of 12).2	2996	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
159072	chr3	11799521	11799800	+	0	NA	intron (NM_138807, intron 6 of 6)	L1M2|LINE|L1	47225	NR_135611	132001		NM_138807	ENSG00000144559	TAMM41	C3orf31|COXPD56|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
221545	chr8	124757221	124757880	+	0	NA	Intergenic	Intergenic	-29043	NM_001282974	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
184207	chr5	95948601	95949080	+	0	NA	intron (NM_012081, intron 1 of 11)	intron (NM_012081, intron 1 of 11)	13011	NM_012081	22936		NM_012081	ENSG00000118985	ELL2	MRCCAT1	elongation factor for RNA polymerase II 2	protein-coding
24062	chr1	235309101	235310030	+	0	NA	intron (NM_016374, intron 2 of 23)	SVA_D|Retroposon|SVA	-17651	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
115109	chr19	14349471	14349930	+	0	NA	intron (NR_134908, intron 1 of 3)	L2a|LINE|L2	14290	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
139685	chr2	227324521	227325950	+	0	NA	promoter-TSS (NM_001277062)	promoter-TSS (NM_001277062)	-16	NM_001277062	56947		NM_020194	ENSG00000168958	MFF	C2orf33|EMPF2|GL004	mitochondrial fission factor	protein-coding
72815	chr15	40105721	40106000	+	0	NA	exon (NM_001003943, exon 3 of 4)	exon (NM_001003943, exon 3 of 4)	226	NM_001003942	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
1642	chr1	3787301	3788350	+	0	NA	intron (NM_020710, intron 1 of 6)	intron (NM_020710, intron 1 of 6)	8673	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
46851	chr11	133902121	133902780	+	0	NA	3' UTR (NM_001277285, exon 20 of 20)	3' UTR (NM_001277285, exon 20 of 20)	-3869	NR_039846	100616119		NR_039846	ENSG00000284020	MIR4697	-	microRNA 4697	ncRNA
192023	chr6	16432201	16432850	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	193938	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
13308	chr1	113412371	113412730	+	0	NA	intron (NM_152900, intron 1 of 20)	L1PA6|LINE|L1	22035	NM_152900	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
106880	chr18	24397201	24398100	+	0	NA	intron (NM_080597, intron 1 of 27)	CpG	174	NM_080597	114876		NM_018030	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein like 1A	protein-coding
182503	chr5	64784451	64784750	+	0	NA	intron (NM_001364478, intron 4 of 11)	intron (NM_001364478, intron 4 of 11)	15670	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
210465	chr7	100135521	100135780	+	0	NA	Intergenic	AluSx1|SINE|Alu	8683	NM_203397	255374		NM_203397	ENSG00000214309	MBLAC1	-	metallo-beta-lactamase domain containing 1	protein-coding
227574	chr9	92295321	92295580	+	0	NA	Intergenic	LTR10D|LTR|ERV1	-1753	NM_001378576	3376		NM_002161	ENSG00000196305	IARS1	GRIDHH|IARS|ILERS|ILRS|IRS|PRO0785	isoleucyl-tRNA synthetase 1	protein-coding
35019	chr11	552751	552850	+	0	NA	intron (NM_198075, intron 13 of 13)	intron (NM_198075, intron 13 of 13)	-6462	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
49176	chr12	15220851	15221540	+	0	NA	5' UTR (NM_001190726, exon 1 of 4)	5' UTR (NM_001190726, exon 1 of 4)	222	NM_001190726	85004		NM_032918	ENSG00000134533	RERG	-	RAS like estrogen regulated growth inhibitor	protein-coding
31011	chr10	88728371	88728530	+	0	NA	intron (NM_001378091, intron 4 of 10)	intron (NM_001378091, intron 4 of 10)	22201	NM_001378091	643414		NM_001080518	ENSG00000204021	LIPK	LIPL2|bA186O14.2	lipase family member K	protein-coding
45087	chr11	117080651	117080950	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSz|SINE|Alu	17628	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
207485	chr7	44640751	44641050	+	0	NA	intron (NM_001363523, intron 2 of 23)	AluSc5|SINE|Alu	34273	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
122726	chr19	50006971	50007330	+	0	NA	intron (NM_001308420, intron 5 of 12)	LTR52|LTR|ERVL	18222	NM_001308420	51231		NM_016440	ENSG00000105053	VRK3	-	VRK serine/threonine kinase 3	protein-coding
46158	chr11	123066401	123066780	+	0	NA	Intergenic	AluJb|SINE|Alu	-4454	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
139418	chr2	222671301	222672100	+	0	NA	promoter-TSS (NM_058165)	promoter-TSS (NM_058165)	42	NM_058165	116255		NM_058165	ENSG00000124003	MOGAT1	DGAT2L|DGAT2L1|MGAT1	monoacylglycerol O-acyltransferase 1	protein-coding
223410	chr8	143931851	143932200	+	0	NA	exon (NM_000445, exon 19 of 33)	exon (NM_000445, exon 19 of 33)	7572	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
87664	chr16	74596901	74597100	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluJb|SINE|Alu	10114	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
145943	chr20	46057101	46057630	+	0	NA	intron (NM_020708, intron 25 of 25)	CpG-17804	28150	NM_020708	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
94066	chr17	27463451	27463850	+	0	NA	intron (NM_001367810, intron 1 of 18)	intron (NM_001367810, intron 1 of 18)	7202	NM_001367810	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
20962	chr1	202343151	202343250	+	0	NA	Intergenic	(TAT)n|Simple_repeat|Simple_repeat	-1234	NM_001310326	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
132976	chr2	111488621	111488880	+	0	NA	intron (NR_024373, intron 1 of 1)	MLT1J|LTR|ERVL-MaLR	6411	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
164274	chr3	57579021	57579650	+	0	NA	intron (NM_001660, intron 3 of 5)	AluSx1|SINE|Alu	18009	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
191058	chr6	3318001	3318730	+	0	NA	intron (NM_001382317, intron 4 of 8)	MER74A|LTR|ERVL	5785	NM_001382319	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
17056	chr1	156098801	156099350	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	-15636	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
7339	chr1	32740521	32740780	+	0	NA	Intergenic	Intergenic	-1180	NM_020888	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
194988	chr6	35370051	35370950	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	27942	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
19488	chr1	175027471	175027630	+	0	NA	Intergenic	AluJb|SINE|Alu	-4095	NR_037606	63931		NM_022100	ENSG00000120333	MRPS14	COXPD38|DJ262D12.2|HSMRPS14|MRP-S14|S14mt|uS14m	mitochondrial ribosomal protein S14	protein-coding
28245	chr10	45578451	45578950	+	0	NA	intron (NM_145021, intron 1 of 6)	L1MC4|LINE|L1	16206	NM_145021	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
105266	chr17	82447371	82447530	+	0	NA	intron (NR_036517, intron 1 of 4)	intron (NR_036517, intron 1 of 4)	2276	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
209715	chr7	86950371	86950550	+	0	NA	intron (NM_001142749, intron 2 of 21)	MER52A|LTR|ERV1	15439	NM_152748	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
186318	chr5	134586621	134588050	+	0	NA	Intergenic	Intergenic	45493	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
47692	chr12	6382751	6383280	+	0	NA	intron (NM_001270987, intron 1 of 9)	L2b|LINE|L2	-1147	NM_002342	4055		NM_002342	ENSG00000111321	LTBR	D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	lymphotoxin beta receptor	protein-coding
128843	chr2	63843071	63843300	+	0	NA	intron (NM_001377529, intron 2 of 11)	intron (NM_001377529, intron 2 of 11)	1289	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
13742	chr1	116877751	116879750	+	0	NA	Intergenic	Intergenic	-31166	NM_020440	5738		NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
76125	chr15	72525601	72525800	+	0	NA	intron (NM_005744, intron 2 of 13)	intron (NM_005744, intron 2 of 13)	51370	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
215438	chr7	157691771	157691930	+	0	NA	intron (NM_130842, intron 11 of 21)	CpG	-117428	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
95810	chr17	38741651	38741950	+	0	NA	intron (NM_001369614, intron 1 of 9)	intron (NM_001369614, intron 1 of 9)	4828	NM_001369615	7703		NM_007144	ENSG00000277258	PCGF2	MEL-18|RNF110|TPFS|ZNF144	polycomb group ring finger 2	protein-coding
210572	chr7	100357121	100357750	+	0	NA	promoter-TSS (NM_001371931)	promoter-TSS (NM_001371931)	-568	NM_001371931	29990		NM_013440	ENSG00000121716	PILRB	FDFACT1|FDFACT2	paired immunoglobin like type 2 receptor beta	protein-coding
203025	chr6	163554621	163554900	+	0	NA	intron (NM_206854, intron 4 of 6)	L2|LINE|L2	116724	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
137788	chr2	199659351	199659450	+	0	NA	TTS (NR_110270)	TTS (NR_110270)	51332	NR_110270	101927641		NR_110270	ENSG00000238217	LINC01877	-	long intergenic non-protein coding RNA 1877	ncRNA
2275	chr1	8938371	8938930	+	0	NA	Intergenic	LTR77|LTR|ERV1	-7218	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
61204	chr13	49443201	49446430	+	0	NA	promoter-TSS (NM_001287337)	promoter-TSS (NM_001287337)	541	NM_001160308	83852		NM_031915	ENSG00000136169	SETDB2	C13orf4|CLLD8|CLLL8|KMT1F	SET domain bifurcated histone lysine methyltransferase 2	protein-coding
97379	chr17	43324351	43324780	+	0	NA	Intergenic	LTR13|LTR|ERVK	-24334	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
29697	chr10	72058271	72059380	+	0	NA	TTS (NM_001244950)	TTS (NM_001244950)	29726	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
230195	chr9	127806701	127806900	+	0	NA	intron (NR_110170, intron 4 of 14)	intron (NR_110170, intron 4 of 14)	3619	NM_001018078	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
187954	chr5	149343471	149343830	+	0	NA	TTS (NM_152406)	TTS (NM_152406)	-1849	NM_152407	134266		NM_152407	ENSG00000164284	GRPEL2	Mt-GrpE#2	GrpE like 2, mitochondrial	protein-coding
163463	chr3	50616601	50618000	+	0	NA	intron (NM_001243925, intron 1 of 10)	CpG	149	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
97177	chr17	42672151	42672250	+	0	NA	non-coding (NR_073574, exon 7 of 13)	non-coding (NR_073574, exon 7 of 13)	3811	NR_073574	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
119634	chr19	40797971	40800090	+	0	NA	promoter-TSS (NM_080732)	promoter-TSS (NM_080732)	-161	NM_080732	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
146437	chr20	49666671	49667030	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	47028	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
194576	chr6	33419901	33420400	+	0	NA	promoter-TSS (NM_001130066)	promoter-TSS (NM_001130066)	85	NM_006772	8831		NM_006772	ENSG00000197283	SYNGAP1	MRD5|RASA1|RASA5|SYNGAP	synaptic Ras GTPase activating protein 1	protein-coding
159168	chr3	12809251	12809350	+	0	NA	intron (NM_001162499, intron 4 of 14)	L2b|LINE|L2	12620	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
42420	chr11	69070721	69071230	+	0	NA	intron (NM_139075, intron 9 of 24)	intron (NM_139075, intron 9 of 24)	-12201	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
232924	chr9	136884401	136885100	+	0	NA	Intergenic	AluJb|SINE|Alu	-1766	NM_021138	7186		NM_021138	ENSG00000127191	TRAF2	MGC:45012|RNF117|TRAP|TRAP3	TNF receptor associated factor 2	protein-coding
67938	chr14	74768851	74768950	+	0	NA	intron (NM_019589, intron 1 of 20)	L2a|LINE|L2	5584	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
78680	chr15	95826621	95827000	+	0	NA	Intergenic	LFSINE_Vert|SINE|tRNA	301031	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
235713	chrX	48901771	48901930	+	0	NA	intron (NM_144495, intron 3 of 5)	intron (NM_144495, intron 3 of 5)	3358	NM_001167992	10084		NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
187604	chr5	142935601	142936080	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-66930	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
2227	chr1	8856001	8856200	+	0	NA	Intergenic	AluSx|SINE|Alu	10490	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
132588	chr2	107829751	107830200	+	0	NA	intron (NM_182588, intron 1 of 22)	CpG	3083	NM_182588	285190		NM_182588	ENSG00000196862	RGPD4	RGP4	RANBP2 like and GRIP domain containing 4	protein-coding
128221	chr2	54052871	54053480	+	0	NA	intron (NM_001320586, intron 3 of 6)	intron (NM_001320586, intron 3 of 6)	-62440	NM_001320590	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
9052	chr1	44813301	44815100	+	0	NA	TTS (NM_001136537)	TTS (NM_001136537)	5718	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
102222	chr17	75235121	75235480	+	0	NA	intron (NM_024844, intron 18 of 18)	intron (NM_024844, intron 18 of 18)	26306	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
64363	chr14	24117171	24117330	+	0	NA	intron (NM_025230, intron 3 of 14)	intron (NM_025230, intron 3 of 14)	1965	NM_181357	80344		NM_025230	ENSG00000100897	DCAF11	GL014|PRO2389|WDR23	DDB1 and CUL4 associated factor 11	protein-coding
177938	chr4	136864571	136864760	+	0	NA	intron (NR_149105, intron 3 of 3)	intron (NR_149105, intron 3 of 3)	-329091	NR_134640	729307		NR_134640		LINC02510	-	long intergenic non-protein coding RNA 2510	ncRNA
129931	chr2	73739101	73739300	+	0	NA	Intergenic	MER70-int|LTR|ERVL	-1794	NM_001330387	51002		NM_016058	ENSG00000144034	TPRKB	CGI-121|CGI121|GAMOS5	TP53RK binding protein	protein-coding
46026	chr11	122658021	122658280	+	0	NA	intron (NM_032873, intron 1 of 13)	AluSz|SINE|Alu	2428	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
17783	chr1	159198001	159198230	+	0	NA	non-coding (NR_037870, exon 4 of 4)	non-coding (NR_037870, exon 4 of 4)	4307	NR_037870	100131825		NR_037870		CADM3-AS1	-	CADM3 antisense RNA 1	ncRNA
222673	chr8	141234771	141235380	+	0	NA	intron (NM_001286646, intron 2 of 8)	intron (NM_001286646, intron 2 of 8)	-6501	NM_001080431	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
5898	chr1	26811151	26811800	+	0	NA	Intergenic	Intergenic	-15213	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
95458	chr17	36181221	36181680	+	0	NA	Intergenic	Intergenic	-4826	NM_001001417	414059		NM_001001417	ENSG00000274808	TBC1D3B	PRC17|TBC1D3I|TBC1D3L	TBC1 domain family member 3B	protein-coding
231708	chr9	131732721	131733400	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	4387	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
31640	chr10	97393371	97393800	+	0	NA	intron (NM_015179, intron 4 of 33)	intron (NM_015179, intron 4 of 33)	7755	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
67289	chr14	69396271	69396630	+	0	NA	intron (NM_004450, intron 1 of 3)	AluSp|SINE|Alu	1849	NM_004450	2079		NM_004450	ENSG00000100632	ERH	DROER	ERH mRNA splicing and mitosis factor	protein-coding
105784	chr18	2846521	2848430	+	0	NA	intron (NM_032048, intron 1 of 7)	CpG	469	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
204970	chr7	6378751	6379480	+	0	NA	intron (NM_018890, intron 1 of 6)	intron (NM_018890, intron 1 of 6)	4588	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
235614	chrX	47991771	47992100	+	0	NA	intron (NM_006962, intron 3 of 6)	L1MDa|LINE|L1	12054	NM_001007088	7569		NM_006962	ENSG00000147118	ZNF182	HHZ150|KOX14|ZNF21|Zfp182	zinc finger protein 182	protein-coding
17128	chr1	156173501	156173730	+	0	NA	intron (NM_001370567, intron 10 of 13)	L2|LINE|L2	19067	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
33733	chr10	122377921	122378280	+	0	NA	intron (NM_001377254, intron 2 of 11)	intron (NM_001377254, intron 2 of 11)	3392	NM_001377257	59338		NM_021622	ENSG00000107679	PLEKHA1	TAPP1	pleckstrin homology domain containing A1	protein-coding
104018	chr17	80117751	80118050	+	0	NA	intron (NM_000152, intron 17 of 19)	intron (NM_000152, intron 17 of 19)	16319	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
206304	chr7	30160621	30160880	+	0	NA	3' UTR (NM_152793, exon 3 of 3)	3' UTR (NM_152793, exon 3 of 3)	25764	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
108958	chr18	79519921	79520780	+	0	NA	intron (NM_172387, intron 9 of 9)	CpG	-58932	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
154864	chr22	37130721	37130980	+	0	NA	intron (NM_000878, intron 9 of 9)	intron (NM_000878, intron 9 of 9)	19066	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
161121	chr3	38347971	38348130	+	0	NA	intron (NR_146068, intron 1 of 16)	MIR3|SINE|MIR	1265	NM_001349178	9942		NM_005108	ENSG00000093217	XYLB	-	xylulokinase	protein-coding
10885	chr1	78617501	78618130	+	0	NA	Intergenic	LTR41|LTR|ERVL	-2633	NM_001375648	10964		NM_006820	ENSG00000137959	IFI44L	C1orf29|GS3686|TLDC5B	interferon induced protein 44 like	protein-coding
119733	chr19	41261171	41261330	+	0	NA	3' UTR (NM_001699, exon 19 of 19)	3' UTR (NM_001699, exon 19 of 19)	-1307	NM_144732	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
107393	chr18	46094771	46095330	+	0	NA	5' UTR (NM_001001935, exon 2 of 12)	5' UTR (NM_001001935, exon 2 of 12)	3246	NM_004046	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
36044	chr11	2930301	2931050	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-1255	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
206031	chr7	26858751	26858850	+	0	NA	intron (NM_003930, intron 1 of 12)	intron (NM_003930, intron 1 of 12)	-1077	NM_001303468	8935		NM_003930	ENSG00000005020	SKAP2	PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R	src kinase associated phosphoprotein 2	protein-coding
116530	chr19	18191701	18193800	+	0	NA	promoter-TSS (NM_032683)	promoter-TSS (NM_032683)	-468	NM_032683	84769		NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial inner membrane protein like 2	protein-coding
169479	chr3	169665201	169665600	+	0	NA	Intergenic	Intergenic	-1688	NM_001366473	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
65175	chr14	49601401	49601600	+	0	NA	intron (NM_203467, intron 1 of 2)	L2a|LINE|L2	2560	NM_152329	122769		NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
167677	chr3	130094451	130095130	+	0	NA	promoter-TSS (NR_146710)	promoter-TSS (NR_146710)	-486	NR_146710	105374105		NR_146710		LINC02014	-	long intergenic non-protein coding RNA 2014	ncRNA
105683	chr18	2658001	2658630	+	0	NA	intron (NM_015295, intron 1 of 47)	intron (NM_015295, intron 1 of 47)	2589	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
111722	chr19	4340701	4340900	+	0	NA	Intergenic	L1MD|LINE|L1	-1973	NM_017720	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
91794	chr17	7021521	7022630	+	0	NA	promoter-TSS (NM_181844)	promoter-TSS (NM_181844)	-975	NM_181844	255877		NM_181844	ENSG00000161940	BCL6B	BAZF|ZBTB28|ZNF62	BCL6B transcription repressor	protein-coding
17821	chr1	159882051	159882150	+	0	NA	intron (NM_012337, intron 7 of 11)	intron (NM_012337, intron 7 of 11)	17979	NR_130464	100422852		NR_130464	ENSG00000266458	MIR4259	-	microRNA 4259	ncRNA
108608	chr18	75247001	75247300	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	36353	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
4745	chr1	23451551	23452450	+	0	NA	intron (NM_017707, intron 4 of 24)	MIR|SINE|MIR	-27252	NM_003196	6920		NM_003196	ENSG00000204219	TCEA3	TFIIS|TFIIS.H	transcription elongation factor A3	protein-coding
101405	chr17	67382951	67383050	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSx|SINE|Alu	5719	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
125762	chr2	23382901	23383300	+	0	NA	Intergenic	Intergenic	-2079	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
79075	chr16	168351	168830	+	0	NA	Intergenic	Intergenic	2612	NM_001003938	3042		NM_001003938	ENSG00000206177	HBM	HBAP2|HBK	hemoglobin subunit mu	protein-coding
222774	chr8	141980221	141980680	+	0	NA	Intergenic	Intergenic	-194137	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
238890	chrX	154574271	154574430	+	0	NA	Intergenic	Intergenic	3102	NR_027401	100132967		NR_027401	ENSG00000279245	FAM223A	CXorf52|LINC00204A|NCRNA00204|NCRNA00204A|SPCX	family with sequence similarity 223 member A	ncRNA
175802	chr4	77813301	77814430	+	0	NA	intron (NM_001365006, intron 1 of 11)	L1MB8|LINE|L1	5199	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
130945	chr2	87508351	87508500	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	38475	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
66961	chr14	65929001	65929350	+	0	NA	Intergenic	Intergenic	458073	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
127526	chr2	42313971	42314500	+	0	NA	intron (NM_019063, intron 17 of 22)	AluSx|SINE|Alu	45803	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
8100	chr1	39129571	39129800	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	45518	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
199356	chr6	116096071	116096480	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-4578	NM_152729	221294		NM_152729	ENSG00000178425	NT5DC1	C6orf200|LP2642|NT5C2L1	5'-nucleotidase domain containing 1	protein-coding
146896	chr20	51532671	51533630	+	0	NA	intron (NM_001258292, intron 1 of 9)	intron (NM_001258292, intron 1 of 9)	9569	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
36552	chr11	6615771	6616800	+	0	NA	intron (NM_000391, intron 8 of 12)	intron (NM_000391, intron 8 of 12)	3137	NM_000391	1200		NM_000391	ENSG00000166340	TPP1	CLN2|GIG1|LPIC|SCAR7|TPP-1	tripeptidyl peptidase 1	protein-coding
187703	chr5	143375851	143376600	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	27058	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
44052	chr11	95222951	95223400	+	0	NA	intron (NM_001271594, intron 1 of 8)	intron (NM_001271594, intron 1 of 8)	-7011	NR_110295	100129203		NR_110295	ENSG00000245552	LOC100129203	-	uncharacterized LOC100129203	ncRNA
176423	chr4	89258571	89258730	+	0	NA	intron (NM_198281, intron 1 of 1)	MER34|LTR|ERV1	49150	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
216514	chr8	20302901	20303230	+	0	NA	intron (NM_021020, intron 1 of 3)	intron (NM_021020, intron 1 of 3)	898	NM_021020	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
237097	chrX	104108821	104109300	+	0	NA	intron (NM_001012755, intron 1 of 1)	intron (NM_001012755, intron 1 of 1)	-3463	NR_026694	644353		NM_001143978	ENSG00000166707	ZCCHC18	PNMA7B|SIZN2	zinc finger CCHC-type containing 18	protein-coding
22006	chr1	209786871	209787230	+	0	NA	3' UTR (NM_006147, exon 9 of 9)	3' UTR (NM_006147, exon 9 of 9)	-2491	NM_152485	148304		NM_152485	ENSG00000162757	C1orf74	URLC4	chromosome 1 open reading frame 74	protein-coding
107099	chr18	35051151	35051250	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	9787	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
157503	chr22	45330501	45331050	+	0	NA	intron (NR_146323, intron 8 of 11)	intron (NR_146323, intron 8 of 11)	12332	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
80126	chr16	2045721	2046350	+	0	NA	intron (NM_001318194, intron 2 of 5)	intron (NM_001318194, intron 2 of 5)	1799	NM_001318194	4913		NM_002528	ENSG00000065057	NTHL1	FAP3|NTH1|OCTS3|hNTH1	nth like DNA glycosylase 1	protein-coding
129759	chr2	71020401	71020600	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-3575	NR_002185	79315		NR_002185	ENSG00000290930	OR7E91P	-	olfactory receptor family 7 subfamily E member 91 pseudogene	pseudo
18427	chr1	161462051	161462980	+	0	NA	Intergenic	CpG	-42942	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
26861	chr10	24897201	24898150	+	0	NA	intron (NM_020200, intron 3 of 8)	L1ME4a|LINE|L1	54931	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
221321	chr8	123043571	123043730	+	0	NA	Intergenic	LTR65|LTR|ERV1	-1227	NM_001134671	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
144189	chr20	34229501	34229700	+	0	NA	intron (NM_001385218, intron 1 of 3)	SVA_F|Retroposon|SVA	-11823	NM_001672	434		NM_001672	ENSG00000101440	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
235136	chrX	41088021	41088350	+	0	NA	intron (NM_001039590, intron 1 of 44)	AluSc8|SINE|Alu	2740	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
190541	chr5	180688851	180690180	+	0	NA	Intergenic	MER75A|DNA|PiggyBac	5419	NR_146728	105377765		NR_146728		LINC02222	-	long intergenic non-protein coding RNA 2222	ncRNA
51700	chr12	53183871	53184380	+	0	NA	intron (NM_001004304, intron 2 of 6)	(GT)n|Simple_repeat|Simple_repeat	-3200	NM_001244705	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
215361	chr7	157391501	157391700	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	54596	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
135630	chr2	168208851	168209150	+	0	NA	intron (NM_013233, intron 1 of 17)	MLT1I|LTR|ERVL-MaLR	38595	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
62314	chr13	99043621	99044000	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-28025	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
89914	chr16	89709171	89709780	+	0	NA	intron (NM_004913, intron 11 of 14)	intron (NM_004913, intron 11 of 14)	-2381	NR_036480	100128881		NR_036480	ENSG00000261373	VPS9D1-AS1	MYU	VPS9D1 antisense RNA 1	ncRNA
1770	chr1	6031971	6032130	+	0	NA	intron (NM_172130, intron 1 of 14)	intron (NM_172130, intron 1 of 14)	-2638	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
200691	chr6	137269121	137269850	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-50100	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
107142	chr18	35132621	35132880	+	0	NA	intron (NR_046177, intron 6 of 6)	intron (NR_046177, intron 6 of 6)	91337	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
44544	chr11	108069721	108070400	+	0	NA	intron (NM_003478, intron 7 of 18)	intron (NM_003478, intron 7 of 18)	-51507	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
7302	chr1	32448351	32448730	+	0	NA	Intergenic	LTR13|LTR|ERVK	-16532	NM_001145720	728116		NM_001145720	ENSG00000273274	ZBTB8B	ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
14696	chr1	145917901	145919850	+	0	NA	promoter-TSS (NR_002328)	promoter-TSS (NR_002328)	49	NR_073492	8799		NM_003846	ENSG00000131779	PEX11B	PEX11-BETA|PEX11beta|PEX14B	peroxisomal biogenesis factor 11 beta	protein-coding
195421	chr6	36897621	36897880	+	0	NA	intron (NM_001286635, intron 2 of 8)	intron (NM_001286635, intron 2 of 8)	11798	NM_152734	221477		NM_152734	ENSG00000198663	C6orf89	BRAP|PS1TP5TP1	chromosome 6 open reading frame 89	protein-coding
132949	chr2	111459401	111460200	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	35361	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
202947	chr6	160991021	160992980	+	0	NA	exon (NM_001363582, exon 1 of 26)	exon (NM_001363582, exon 1 of 26)	231	NM_005922	4216		NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
58903	chr13	19640201	19640600	+	0	NA	intron (NM_017520, intron 1 of 13)	MER58B|DNA|hAT-Charlie	6741	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
26400	chr10	17007371	17007730	+	0	NA	intron (NM_001081, intron 28 of 66)	intron (NM_001081, intron 28 of 66)	122261	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
146868	chr20	51483151	51483450	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	-30323	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
68155	chr14	75568801	75569000	+	0	NA	Intergenic	Intergenic	-9720	NM_017791	55640		NM_017791	ENSG00000119686	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2	FLVCR choline and putative heme transporter 2	protein-coding
106752	chr18	23578201	23578630	+	0	NA	intron (NM_000271, intron 1 of 24)	intron (NM_000271, intron 1 of 24)	8091	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
26168	chr10	14409901	14410100	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-26576	NR_031668	100302116		NR_031668	ENSG00000221371	MIR1265	MIRN1265|hsa-mir-1265	microRNA 1265	ncRNA
55926	chr12	109879151	109879560	+	0	NA	intron (NM_016433, intron 1 of 4)	intron (NM_016433, intron 1 of 4)	1186	NM_016433	51228		NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
40952	chr11	65331971	65332130	+	0	NA	Intergenic	Kanga1b|DNA|TcMar-Tc2	-1802	NM_006268	5977		NM_006268	ENSG00000133884	DPF2	CSS7|REQ|SMARCG2|UBID4|ubi-d4	double PHD fingers 2	protein-coding
102197	chr17	75171751	75173150	+	0	NA	intron (NM_001005849, intron 2 of 2)	AluSz|SINE|Alu	10509	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
92002	chr17	7447421	7447930	+	0	NA	intron (NM_000747, intron 6 of 10)	intron (NM_000747, intron 6 of 10)	2614	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
232199	chr9	134325201	134328130	+	0	NA	intron (NM_002957, intron 1 of 9)	CpG-29009	210	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
219610	chr8	80085071	80086200	+	0	NA	intron (NM_001287144, intron 1 of 5)	L1MC4|LINE|L1	-4804	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
25745	chr10	9175271	9175430	+	0	NA	Intergenic	Intergenic	-100263	NR_108039	100507163		NR_108039		LINC00709	-	long intergenic non-protein coding RNA 709	ncRNA
81276	chr16	4648101	4649380	+	0	NA	intron (NM_001142291, intron 1 of 15)	CpG	-22578	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
34526	chr10	132785471	132786030	+	0	NA	exon (NM_177400, exon 1 of 3)	exon (NM_177400, exon 1 of 3)	397	NM_177400	84504		NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B|SPAX8	NK6 homeobox 2	protein-coding
84241	chr16	29999121	29999580	+	0	NA	intron (NR_130786, intron 3 of 7)	intron (NR_130786, intron 3 of 7)	3109	NR_130787	283899		NM_173618	ENSG00000169592	INO80E	CCDC95	INO80 complex subunit E	protein-coding
119116	chr19	39343921	39344350	+	0	NA	intron (NM_001303614, intron 1 of 12)	intron (NM_001303614, intron 1 of 12)	1714	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
27131	chr10	28246271	28246630	+	0	NA	intron (NM_001318170, intron 1 of 16)	L1M4c|LINE|L1	35673	NM_173496	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
159196	chr3	12873121	12874230	+	0	NA	Intergenic	Intergenic	11536	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
98478	chr17	47199921	47200380	+	0	NA	Intergenic	Intergenic	-8912	NM_001002841	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
171045	chr3	195251521	195251780	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	-3730	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
207992	chr7	55473751	55474250	+	0	NA	intron (NM_001321242, intron 4 of 4)	intron (NM_001321242, intron 4 of 4)	52880	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
113340	chr19	8615401	8617050	+	0	NA	Intergenic	AluSg|SINE|Alu	-5510	NM_030957	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
63057	chr13	113113421	113113680	+	0	NA	intron (NR_051961, intron 2 of 6)	intron (NR_051961, intron 2 of 6)	7759	NM_019616	2155		NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
232042	chr9	133420371	133420900	+	0	NA	intron (NR_024514, intron 1 of 17)	MER101|LTR|ERV1	-1732	NM_139027	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
73253	chr15	41811021	41811880	+	0	NA	intron (NM_014994, intron 5 of 30)	MER5A|DNA|hAT-Charlie	-16635	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
77798	chr15	88206221	88206430	+	0	NA	promoter-TSS (NM_001320135)	promoter-TSS (NM_001320135)	-351	NM_001320135	4916		NM_002530	ENSG00000140538	NTRK3	GP145-TrkC|TRKC|gp145(trkC)	neurotrophic receptor tyrosine kinase 3	protein-coding
113875	chr19	10666371	10666830	+	0	NA	intron (NM_153464, intron 1 of 17)	L1MC5a|LINE|L1	12254	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
174626	chr4	40306901	40308000	+	0	NA	non-coding (NR_121641, exon 1 of 4)	non-coding (NR_121641, exon 1 of 4)	265	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
137294	chr2	195561471	195561630	+	0	NA	Intergenic	MIR|SINE|MIR	-95408	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
165555	chr3	101439451	101439750	+	0	NA	intron (NM_001077203, intron 4 of 22)	SVA_F|Retroposon|SVA	73612	NM_001282802	57337		NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
236203	chrX	65680621	65680880	+	0	NA	intron (NM_002444, intron 1 of 12)	AluSz6|SINE|Alu	13096	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
27838	chr10	38404871	38405350	+	0	NA	Intergenic	Intergenic	-2183	NR_148868	285961		NR_027269	ENSG00000291056	SEPTIN7P9	CDC10L|SEPT7L|SEPT7P9|bA291L22.2	septin 7 pseudogene 9	pseudo
4276	chr1	19666871	19667030	+	0	NA	intron (NM_000871, intron 1 of 2)	L2a|LINE|L2	2075	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
81083	chr16	4346051	4346680	+	0	NA	intron (NM_001201479, intron 27 of 30)	MIR|SINE|MIR	4956	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
177074	chr4	108051451	108051930	+	0	NA	intron (NM_001130714, intron 9 of 9)	intron (NM_001130714, intron 9 of 9)	47026	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
226061	chr9	61859271	61859800	+	0	NA	Intergenic	SST1|Satellite|centr	3080	NR_144466	105379807		NR_144466		LOC105379807	-	uncharacterized LOC105379807	ncRNA
47999	chr12	6920351	6920450	+	0	NA	intron (NM_001975, intron 8 of 11)	AluSp|SINE|Alu	-4059	NM_001007026	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
150960	chr21	44316551	44316930	+	0	NA	intron (NM_001002021, intron 12 of 24)	(GT)n|Simple_repeat|Simple_repeat	16687	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
97601	chr17	44117821	44118080	+	0	NA	intron (NM_005474, intron 1 of 26)	intron (NM_005474, intron 1 of 26)	2038	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
237746	chrX	129605271	129605680	+	0	NA	Intergenic	AluSc8|SINE|Alu	49481	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
200874	chr6	138944501	138944850	+	0	NA	intron (NM_031922, intron 4 of 19)	intron (NM_031922, intron 4 of 19)	43578	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
119682	chr19	40962451	40962750	+	0	NA	Intergenic	AluJb|SINE|Alu	-28682	NM_000767	1555		NM_000767	ENSG00000197408	CYP2B6	CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450	cytochrome P450 family 2 subfamily B member 6	protein-coding
179215	chr4	173508251	173508350	+	0	NA	intron (NM_001329597, intron 1 of 3)	intron (NM_001329597, intron 1 of 3)	10844	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
3748	chr1	16646471	16646650	+	0	NA	intron (NR_027504, intron 2 of 13)	intron (NR_027504, intron 2 of 13)	986	NR_027504	11209		NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
59426	chr13	25371451	25371550	+	0	NA	promoter-TSS (NM_016529)	promoter-TSS (NM_016529)	-474	NM_016529	51761		NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
89066	chr16	88456901	88457750	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	4045	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
73135	chr15	41334771	41334930	+	0	NA	intron (NM_001243144, intron 1 of 8)	intron (NM_001243144, intron 1 of 8)	1969	NM_018454	51203		NM_016359	ENSG00000137804	NUSAP1	ANKT|BM037|LNP|NUSAP|PRO0310p1|Q0310|SAPL	nucleolar and spindle associated protein 1	protein-coding
236156	chrX	63785101	63785550	+	0	NA	promoter-TSS (NM_001353922)	promoter-TSS (NM_001353922)	-111	NM_001330495	23229		NM_015185	ENSG00000131089	ARHGEF9	COLLYBISTIN|DEE8|EIEE8|HPEM-2|PEM-2|PEM2	Cdc42 guanine nucleotide exchange factor 9	protein-coding
19654	chr1	180237271	180237530	+	0	NA	intron (NM_033343, intron 1 of 5)	intron (NM_033343, intron 1 of 5)	7136	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
2498	chr1	9689091	9690030	+	0	NA	promoter-TSS (NM_001350234)	promoter-TSS (NM_001350234)	16	NM_001350234	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
223145	chr8	143515721	143517230	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	-10227	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
225806	chr9	37590821	37591080	+	0	NA	intron (NM_001001790, intron 1 of 1)	intron (NM_001001790, intron 1 of 1)	1647	NM_001001790	401505		NM_001001790	ENSG00000175768	TOMM5	C9orf105|Tom5|bA613M10.3	translocase of outer mitochondrial membrane 5	protein-coding
136650	chr2	180000601	180000800	+	0	NA	promoter-TSS (NM_001376030)	promoter-TSS (NM_001376030)	-794	NM_001376030	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
46582	chr11	128509971	128511250	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	11700	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
85414	chr16	50316601	50317100	+	0	NA	3' UTR (NM_001173984, exon 17 of 17)	3' UTR (NM_001173984, exon 17 of 17)	24234	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
148150	chr20	63501971	63503150	+	0	NA	Intergenic	Intergenic	-3477	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
158151	chr22	50189771	50190990	+	0	NA	promoter-TSS (NM_001320488)	promoter-TSS (NM_001320488)	-207	NM_001320488	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
46318	chr11	125114321	125114580	+	0	NA	Intergenic	Intergenic	-2824	NM_001258245	219854		NM_001080546	ENSG00000150433	TMEM218	JBTS39	transmembrane protein 218	protein-coding
78814	chr15	99564901	99567830	+	0	NA	promoter-TSS (NM_001352616)	promoter-TSS (NM_001352616)	-118	NM_001352616	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
20669	chr1	200306971	200307750	+	0	NA	Intergenic	Intergenic	66432	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
3607	chr1	16249921	16250200	+	0	NA	3' UTR (NM_018994, exon 10 of 10)	3' UTR (NM_018994, exon 10 of 10)	-12877	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
109855	chr19	1224871	1225180	+	0	NA	intron (NM_000455, intron 8 of 9)	intron (NM_000455, intron 8 of 9)	12980	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
213927	chr7	142611801	142612380	+	0	NA	intron (NM_001363538, intron 11 of 11)	MER50|LTR|ERV1	-54209	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
230462	chr9	128204001	128204600	+	0	NA	promoter-TSS (NM_012127)	promoter-TSS (NM_012127)	-78	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
134374	chr2	136255971	136256430	+	0	NA	Intergenic	Intergenic	-138051	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
66872	chr14	65079071	65079500	+	0	NA	intron (NM_145113, intron 3 of 5)	intron (NM_145113, intron 3 of 5)	-10633	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
105732	chr18	2730251	2730950	+	0	NA	intron (NM_015295, intron 24 of 47)	intron (NM_015295, intron 24 of 47)	74874	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
140961	chr2	237902401	237902800	+	0	NA	intron (NM_005855, intron 2 of 2)	intron (NM_005855, intron 2 of 2)	42977	NM_005855	10267		NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding
103008	chr17	76841671	76841830	+	0	NA	Intergenic	Intergenic	-14416	NR_135283	283994		NR_135283	ENSG00000267535	LINC00868	C17orf52	long intergenic non-protein coding RNA 868	ncRNA
136900	chr2	189561401	189561600	+	0	NA	3' UTR (NM_014585, exon 8 of 8)	3' UTR (NM_014585, exon 8 of 8)	19286	NM_014585	30061		NM_014585	ENSG00000138449	SLC40A1	FPN|FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3	solute carrier family 40 member 1	protein-coding
120413	chr19	43798121	43799030	+	0	NA	exon (NM_001031749, exon 4 of 5)	exon (NM_001031749, exon 4 of 5)	1454	NM_001288763	284348		NM_182573	ENSG00000159871	LYPD5	HALDISIN|PRO4356	LY6/PLAUR domain containing 5	protein-coding
139554	chr2	224921771	224922700	+	0	NA	intron (NM_001363762, intron 2 of 55)	intron (NM_001363762, intron 2 of 55)	24814	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
147662	chr20	62244451	62245050	+	0	NA	intron (NM_144498, intron 1 of 13)	intron (NM_144498, intron 1 of 13)	6229	NM_001278649	9885		NM_014835	ENSG00000130703	OSBPL2	DFNA67|DNFA67|ORP-2|ORP2	oxysterol binding protein like 2	protein-coding
18739	chr1	167479221	167479800	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	39019	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
188853	chr5	159220171	159220480	+	0	NA	Intergenic	MIR|SINE|MIR	-7390	NR_134261	105377682		NR_134261	ENSG00000253315	LINC01932	-	long intergenic non-protein coding RNA 1932	ncRNA
214041	chr7	143358871	143359300	+	0	NA	intron (NM_001278297, intron 3 of 5)	intron (NM_001278297, intron 3 of 5)	2995	NM_014690	9715		NM_014690	ENSG00000159784	FAM131B	-	family with sequence similarity 131 member B	protein-coding
189776	chr5	176657851	176658380	+	0	NA	3' UTR (NM_012171, exon 9 of 9)	3' UTR (NM_012171, exon 9 of 9)	10631	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
104540	chr17	81287801	81288400	+	0	NA	intron (NM_001037984, intron 2 of 15)	intron (NM_001037984, intron 2 of 15)	7207	NM_001037984	124565		NM_138570	ENSG00000157637	SLC38A10	PP1744|SNAT10	solute carrier family 38 member 10	protein-coding
78037	chr15	90016801	90017000	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	10145	NR_036135	100422841		NR_036135	ENSG00000265871	MIR3174	-	microRNA 3174	ncRNA
22244	chr1	212613021	212613330	+	0	NA	intron (NM_001206484, intron 2 of 4)	intron (NM_001206484, intron 2 of 4)	-1843	NM_001206486	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
68233	chr14	76953301	76954480	+	0	NA	Intergenic	Intergenic	-5748	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
2008	chr1	6782271	6782430	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	2630	NR_149049	110841581		NR_149049		CAMTA1-DT	lncCAMTA1	CAMTA1 divergent transcript	ncRNA
230575	chr9	128549671	128549830	+	0	NA	intron (NR_031672, intron 2 of 2).4	L1MB3|LINE|L1	-2837	NM_001375318	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
1343	chr1	2474751	2474850	+	0	NA	intron (NM_001303012, intron 1 of 21)	intron (NM_001303012, intron 1 of 21)	-1489	NM_014638	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
42321	chr11	68476821	68477480	+	0	NA	intron (NM_001352362, intron 2 of 24)	L1MB8|LINE|L1	16398	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
10770	chr1	77281801	77282800	+	0	NA	promoter-TSS (NM_012093)	promoter-TSS (NM_012093)	281	NM_174858	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
102320	chr17	75386471	75386980	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	18953	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
123995	chr19	55449351	55450250	+	0	NA	Intergenic	Intergenic	-6937	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
140855	chr2	237431571	237431730	+	0	NA	Intergenic	L1MB7|LINE|L1	-17443	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
194196	chr6	32151831	32152580	+	0	NA	promoter-TSS (NM_030651).2	promoter-TSS (NM_030651).2	-266	NM_030651	80863		NM_030651	ENSG00000204314	PRRT1	C6orf31|DSPD1|IFITMD7|NG5|SynDIG4	proline rich transmembrane protein 1	protein-coding
166535	chr3	114812101	114812430	+	0	NA	intron (NM_015642, intron 3 of 9)	LTR12C|LTR|ERV1	-53158	NM_001164345	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
109961	chr19	1386051	1386500	+	0	NA	intron (NM_001363602, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	2368	NM_001363602	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
18568	chr1	162847901	162848100	+	0	NA	Intergenic	Intergenic	20815	NM_178550	339512		NM_178550	ENSG00000185860	CCDC190	C1orf110	coiled-coil domain containing 190	protein-coding
64803	chr14	34930901	34932000	+	0	NA	intron (NR_151701, intron 2 of 4)	intron (NR_151701, intron 2 of 4)	-8472	NR_002937	280655		NR_002937		IGBP1P1	C14orf19	IGBP1 pseudogene 1	pseudo
131892	chr2	98743851	98744180	+	0	NA	Intergenic	MIR|SINE|MIR	-12883	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
63019	chr13	112764371	112764530	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	-9719	NR_046661	100874205		NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
224622	chr9	20525751	20525850	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	-23458	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
36206	chr11	3450301	3450530	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	26658	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
99958	chr17	57442971	57443600	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	80312	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
196889	chr6	52283301	52283500	+	0	NA	exon (NM_002388, exon 2 of 17)	exon (NM_002388, exon 2 of 17)	1342	NM_001366373	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
198391	chr6	105649251	105649830	+	0	NA	Intergenic	Intergenic	-246458	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
104273	chr17	80791121	80792380	+	0	NA	intron (NM_020761, intron 7 of 33)	intron (NM_020761, intron 7 of 33)	13882	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
173448	chr4	8269801	8270000	+	0	NA	5' UTR (NM_001297559, exon 1 of 7)	5' UTR (NM_001297559, exon 1 of 7)	146	NM_001297559	94031		NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
186246	chr5	134424471	134424680	+	0	NA	Intergenic	AluYf1|SINE|Alu	10472	NR_105044	102546229		NR_105044		LINC02999	-	long intergenic non-protein coding RNA 2999	ncRNA
71290	chr14	105289101	105289300	+	0	NA	intron (NM_001242787, intron 1 of 17)	AluJo|SINE|Alu	-11574	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
37403	chr11	17209901	17210100	+	0	NA	Intergenic	Intergenic	-2014	NM_001321380	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
145457	chr20	43665751	43665930	+	0	NA	Intergenic	Intergenic	-1179	NM_001278610	4605		NM_002466	ENSG00000101057	MYBL2	B-MYB|BMYB	MYB proto-oncogene like 2	protein-coding
218720	chr8	58658721	58660950	+	0	NA	promoter-TSS (NM_001144772)	promoter-TSS (NM_001144772)	18	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
24903	chr10	1046171	1047800	+	0	NA	intron (NM_001317955, intron 2 of 5)	intron (NM_001317955, intron 2 of 5)	1901	NM_001317957	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
96976	chr17	42259471	42259830	+	0	NA	intron (NM_012448, intron 1 of 18)	AluSx1|SINE|Alu	16741	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
30982	chr10	88060571	88060930	+	0	NA	Intergenic	Intergenic	197125	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
19333	chr1	173669521	173669780	+	0	NA	intron (NR_158771, intron 1 of 4)	CpG	201	NM_198493	339416		NM_198493	ENSG00000183831	ANKRD45	CT117	ankyrin repeat domain 45	protein-coding
194168	chr6	32107171	32107650	+	0	NA	intron (NM_019105, intron 1 of 43).4	intron (NM_019105, intron 1 of 43).4	1928	NM_019105	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
113242	chr19	8492521	8492930	+	0	NA	intron (NM_032152, intron 4 of 9)	AluSx1|SINE|Alu	9915	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
102577	chr17	75874551	75874650	+	0	NA	exon (NM_033452, exon 6 of 6)	exon (NM_033452, exon 6 of 6)	3981	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
232579	chr9	136386071	136386430	+	0	NA	intron (NM_003086, intron 12 of 22)	L1MB4|LINE|L1	12187	NM_003086	6621		NM_003086	ENSG00000165684	SNAPC4	NEDRSO|PTFalpha|SNAP190	small nuclear RNA activating complex polypeptide 4	protein-coding
86813	chr16	67849301	67849500	+	0	NA	intron (NM_001322041, intron 1 of 4)	AluSx|SINE|Alu	-1707	NM_025082	80152		NM_025082	ENSG00000102901	CENPT	C16orf56|CENP-T|SSMGA	centromere protein T	protein-coding
142859	chr20	17622771	17623130	+	0	NA	intron (NM_004587, intron 13 of 24)	intron (NM_004587, intron 13 of 24)	52875	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
71265	chr14	105212751	105213050	+	0	NA	intron (NM_145685, intron 11 of 13)	intron (NM_145685, intron 11 of 13)	-31577	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
82788	chr16	21454871	21455030	+	0	NA	intron (NR_027155, intron 22 of 28)	AluSx1|SINE|Alu	-20495	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
180917	chr5	34305871	34306030	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-61226	NR_146599	114899		NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and TNF related 3	protein-coding
150648	chr21	43411451	43411630	+	0	NA	Intergenic	Intergenic	15591	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
159576	chr3	14999251	14999350	+	0	NA	intron (NM_003298, intron 1 of 14)	AluSp|SINE|Alu	-50859	NR_046251	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
2561	chr1	9767851	9768700	+	0	NA	intron (NM_001302883, intron 2 of 17)	intron (NM_001302883, intron 2 of 17)	55690	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
210076	chr7	96686491	96687000	+	0	NA	intron (NR_163952, intron 2 of 6)	L1PA3|LINE|L1	-22407	NR_038948	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
26301	chr10	14975101	14975300	+	0	NA	intron (NR_147060, intron 1 of 2)	SATR1|Satellite|Satellite	15812	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
83747	chr16	28668271	28668430	+	0	NA	Intergenic	Intergenic	-20208	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
82123	chr16	14713501	14713780	+	0	NA	intron (NM_001277324, intron 1 of 7)	AluSp|SINE|Alu	1951	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
163345	chr3	50431551	50431650	+	0	NA	intron (NM_006030, intron 3 of 37)	MIRb|SINE|MIR	66237	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
91343	chr17	4485601	4486900	+	0	NA	exon (NM_182538, exon 10 of 12)	exon (NM_182538, exon 10 of 12)	-12631	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
154356	chr22	32882051	32882350	+	0	NA	intron (NM_133633, intron 3 of 11)	intron (NM_133633, intron 3 of 11)	80495	NM_000362	7078		NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
163870	chr3	52499571	52499730	+	0	NA	intron (NM_015136, intron 1 of 68)	AluYa5|SINE|Alu	4312	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
171469	chr3	196431171	196433350	+	0	NA	non-coding (NR_046745, exon 2 of 2)	non-coding (NR_046745, exon 2 of 2)	167	NM_015562	26043		NM_015562	ENSG00000163960	UBXN7	UBXD7	UBX domain protein 7	protein-coding
4457	chr1	21338651	21338950	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	6704	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
6259	chr1	27570421	27570950	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	32809	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
115550	chr19	15510421	15510880	+	0	NA	intron (NM_173483, intron 1 of 13)	intron (NM_173483, intron 1 of 13)	2125	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
26972	chr10	26721321	26722180	+	0	NA	intron (NM_001321978, intron 6 of 9)	intron (NM_001321978, intron 6 of 9)	24049	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
205051	chr7	6579421	6579680	+	0	NA	intron (NM_001371297, intron 2 of 7)	intron (NM_001371297, intron 2 of 7)	2096	NR_163913	55146		NM_018106	ENSG00000136247	ZDHHC4	ZNF374	zinc finger DHHC-type palmitoyltransferase 4	protein-coding
20003	chr1	185289101	185289300	+	0	NA	intron (NM_017673, intron 18 of 18)	intron (NM_017673, intron 18 of 18)	28043	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
34082	chr10	125145071	125145430	+	0	NA	intron (NM_001290214, intron 1 of 10)	intron (NM_001290214, intron 1 of 10)	13527	NM_001321013	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
225587	chr9	36134601	36135050	+	0	NA	Intergenic	Intergenic	-1711	NR_104638	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
30791	chr10	84362001	84362600	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	33711	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
6488	chr1	28371771	28372080	+	0	NA	intron (NM_001350158, intron 1 of 14)	AluSz|SINE|Alu	2185	NM_001350158	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
57208	chr12	121501701	121502200	+	0	NA	intron (NM_001005366, intron 11 of 22)	intron (NM_001005366, intron 11 of 22)	-57598	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
199864	chr6	127795401	127795600	+	0	NA	intron (NM_001010923, intron 4 of 5).2	AluY|SINE|Alu	59688	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
238121	chrX	136658101	136658650	+	0	NA	intron (NM_000074, intron 4 of 4)	intron (NM_000074, intron 4 of 4)	10217	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
62154	chr13	97132351	97132450	+	0	NA	Intergenic	Intergenic	-9434	NM_001382671	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
51934	chr12	53727121	53728600	+	0	NA	promoter-TSS (NR_026554)	promoter-TSS (NR_026554)	-408	NM_001143682	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
167394	chr3	128907101	128907500	+	0	NA	intron (NM_014049, intron 12 of 17)	intron (NM_014049, intron 12 of 17)	27680	NM_014049	28976		NM_014049	ENSG00000177646	ACAD9	MC1DN20|NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
39342	chr11	59273251	59273580	+	0	NA	Intergenic	Intergenic	-60488	NM_001039396	219972		NM_001039396	ENSG00000197629	MPEG1	IMD77|MPG1|MPS1|Mpg-1|P-2	macrophage expressed 1	protein-coding
218173	chr8	41962871	41963030	+	0	NA	intron (NM_001305878, intron 8 of 13)	L2a|LINE|L2	-66209	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
123482	chr19	54180951	54181250	+	0	NA	exon (NM_001146083, exon 5 of 7).6	exon (NM_001146083, exon 5 of 7).6	-7940	NM_144686	147798		NM_144686	ENSG00000167608	TMC4	-	transmembrane channel like 4	protein-coding
227929	chr9	94315171	94315530	+	0	NA	Intergenic	Intergenic	13294	NM_017561	54754		NM_017561	ENSG00000130950	NUTM2F	FAM22F|NUTMF	NUT family member 2F	protein-coding
99241	chr17	49694371	49694530	+	0	NA	Intergenic	AluSx1|SINE|Alu	13514	NM_001278784	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
110024	chr19	1449601	1450450	+	0	NA	promoter-TSS (NM_005883)	promoter-TSS (NM_005883)	-96	NM_005883	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
165684	chr3	101873201	101873600	+	0	NA	Intergenic	Intergenic	23886	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
68315	chr14	77376121	77377800	+	0	NA	promoter-TSS (NM_001010860)	promoter-TSS (NM_001010860)	134	NM_001346133	283578		NM_213601	ENSG00000100580	TMED8	FAM15B	transmembrane p24 trafficking protein family member 8	protein-coding
38077	chr11	35195051	35195230	+	0	NA	intron (NM_001202556, intron 5 of 7)	intron (NM_001202556, intron 5 of 7)	32190	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
120295	chr19	43467671	43467830	+	0	NA	Intergenic	AluJb|SINE|Alu	-2142	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
198436	chr6	106102001	106102480	+	0	NA	intron (NM_182907, intron 2 of 4)	intron (NM_182907, intron 2 of 4)	3299	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
90014	chr16	89889501	89889700	+	0	NA	intron (NM_014972, intron 5 of 17)	AluSp|SINE|Alu	16008	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
61046	chr13	48239801	48240200	+	0	NA	intron (NM_021999, intron 1 of 5)	intron (NM_021999, intron 1 of 5)	6794	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
60748	chr13	44576501	44578250	+	0	NA	promoter-TSS (NM_001243799)	promoter-TSS (NM_001243799)	-810	NM_001243799	8848		NM_006022	ENSG00000102804	TSC22D1	HUCEP-2|Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
42091	chr11	67509751	67510830	+	0	NA	Intergenic	Intergenic	-2128	NM_001271849	10263		NM_005851	ENSG00000167797	CDK2AP2	DOC-1R|DOC1R|p14	cyclin dependent kinase 2 associated protein 2	protein-coding
189749	chr5	176611401	176612500	+	0	NA	Intergenic	L2|LINE|L2	-1794	NM_052899	114787		NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
40659	chr11	64742001	64743300	+	0	NA	intron (NM_001098670, intron 2 of 16)	CpG-4419	1492	NM_001098671	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
64071	chr14	22563971	22564630	+	0	NA	TTS (NM_001344)	TTS (NM_001344)	-7238	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
194072	chr6	31871171	31871900	+	0	NA	exon (NM_001178044, exon 7 of 20).3	exon (NM_001178044, exon 7 of 20).3	6136	NM_001178045	80736		NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1	solute carrier family 44 member 4	protein-coding
156126	chr22	40107021	40107580	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	62483	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
161890	chr3	45949001	45949400	+	0	NA	TTS (NM_006564)	TTS (NM_006564)	5736	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
175314	chr4	68316821	68317280	+	0	NA	intron (NM_001031732, intron 15 of 16)	AluJo|SINE|Alu	33040	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
183030	chr5	73214471	73214630	+	0	NA	Intergenic	Intergenic	-12589	NR_134291	340090		NR_134291	ENSG00000287090	LOC340090	-	uncharacterized LOC340090	ncRNA
39708	chr11	61752101	61753950	+	0	NA	intron (NM_001127392, intron 1 of 26)	intron (NM_001127392, intron 1 of 26)	389	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
103464	chr17	78329371	78330100	+	0	NA	Intergenic	Intergenic	29932	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
127022	chr2	37004871	37005530	+	0	NA	intron (NM_019024, intron 30 of 35)	L2c|LINE|L2	-38664	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
153260	chr22	24131251	24131680	+	0	NA	intron (NM_012295, intron 28 of 36)	intron (NM_012295, intron 28 of 36)	-50022	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
15988	chr1	151967921	151968750	+	0	NA	Intergenic	LTR41C|LTR|ERVL	25524	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
7603	chr1	35221001	35221300	+	0	NA	Intergenic	Intergenic	-28005	NM_005066	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
176561	chr4	98612721	98612980	+	0	NA	intron (NM_005723, intron 1 of 7)	L2a|LINE|L2	45761	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
229819	chr9	125663121	125663480	+	0	NA	intron (NM_001006621, intron 1 of 9)	L2a|LINE|L2	43908	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
159988	chr3	18345221	18345480	+	0	NA	TTS (NM_001322872)	TTS (NM_001322872)	79989	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
198897	chr6	109526921	109527210	+	0	NA	intron (NM_001145128, intron 29 of 40)	intron (NM_001145128, intron 29 of 40)	-43828	NM_001164313	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
90837	chr17	2337201	2338700	+	0	NA	intron (NM_001346700, intron 1 of 22)	CpG	449	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
195563	chr6	37492701	37492900	+	0	NA	intron (NM_138493, intron 1 of 3)	intron (NM_138493, intron 1 of 3)	7093	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
94914	chr17	31900371	31900530	+	0	NA	intron (NM_018428, intron 1 of 18)	AluSx4|SINE|Alu	1258	NM_018428	55813		NM_018428	ENSG00000108651	UTP6	C17orf40|HCA66	UTP6 small subunit processome component	protein-coding
210343	chr7	99525771	99526000	+	0	NA	exon (NM_014569, exon 6 of 7)	exon (NM_014569, exon 6 of 7)	19880	NM_001318084	23660		NM_014569	ENSG00000196652	ZKSCAN5	ZFP-95|ZFP95|ZNF914|ZSCAN37	zinc finger with KRAB and SCAN domains 5	protein-coding
179493	chr4	184626071	184626550	+	0	NA	Intergenic	MER11B|LTR|ERVK	-1438	NR_131967	105377586		NR_131965	ENSG00000254233	LINC02365	LVCAT8	long intergenic non-protein coding RNA 2365	ncRNA
65733	chr14	53128721	53128980	+	0	NA	intron (NM_030637, intron 1 of 11)	LTR7B|LTR|ERV1	24473	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
60971	chr13	46625621	46626080	+	0	NA	intron (NM_015116, intron 1 of 18)	AluJb|SINE|Alu	72680	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
143261	chr20	25082601	25082980	+	0	NA	promoter-TSS (NM_001256271)	promoter-TSS (NM_001256271)	-649	NM_001256271	30813		NM_014588	ENSG00000100987	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
168708	chr3	150700101	150700300	+	0	NA	intron (NM_001308234, intron 2 of 13)	AluY|SINE|Alu	-3364	NR_121675	101928085		NR_121674	ENSG00000240137	ERICH6-AS1	-	ERICH6 antisense RNA 1	ncRNA
133872	chr2	128864351	128864650	+	0	NA	promoter-TSS (NR_110278)	promoter-TSS (NR_110278)	-100	NR_110278	101927881		NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
33175	chr10	113006321	113006680	+	0	NA	intron (NM_001363501, intron 4 of 13)	L1ME3|LINE|L1	-38855	NR_132769	106635520		NR_132769		SNORA87	-	small nucleolar RNA, H/ACA box 87	snoRNA
216458	chr8	19624251	19624750	+	0	NA	intron (NM_001354476, intron 1 of 8)	MLT1J2|LTR|ERVL-MaLR	-21955	NM_001354499	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
15239	chr1	149601301	149601550	+	0	NA	Intergenic	MER31-int|LTR|ERV1	-5587	NR_111950	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
11231	chr1	88887051	88887780	+	0	NA	intron (NM_001514, intron 1 of 6)	intron (NM_001514, intron 1 of 6)	4152	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
107777	chr18	51044301	51044500	+	0	NA	intron (NM_005359, intron 1 of 11)	intron (NM_005359, intron 1 of 11)	14187	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
212045	chr7	114961301	114961700	+	0	NA	intron (NM_199072, intron 3 of 4)	intron (NM_199072, intron 3 of 4)	39346	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
210227	chr7	99361701	99361900	+	0	NA	intron (NM_001190996, intron 8 of 9)	MER58B|DNA|hAT-Charlie	-12930	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
165783	chr3	105788471	105788830	+	0	NA	intron (NM_001321811, intron 3 of 16)	MIR|SINE|MIR	78941	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
237779	chrX	129778371	129778900	+	0	NA	Intergenic	L1MA10|LINE|L1	-1314	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
206812	chr7	37029201	37029400	+	0	NA	intron (NM_014800, intron 15 of 21)	intron (NM_014800, intron 15 of 21)	31504	NR_104120	100861514		NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
60302	chr13	40642071	40642630	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	24291	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
166902	chr3	124761251	124761630	+	0	NA	TTS (NM_002213)	TTS (NM_002213)	29001	NR_036088	100422864		NR_036088	ENSG00000265981	MIR544B	-	microRNA 544b	ncRNA
20871	chr1	202129701	202129900	+	0	NA	3' UTR (NM_004767, exon 2 of 2)	3' UTR (NM_004767, exon 2 of 2)	6883	NM_004767	9283		NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2|ETBRLP2	G protein-coupled receptor 37 like 1	protein-coding
149826	chr21	35023271	35023700	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	15941	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
75993	chr15	70585171	70585900	+	0	NA	intron (NR_135691, intron 1 of 1)	CpG	1071	NR_135691	101929151		NR_135691	ENSG00000280639	LINC02204	-	long intergenic non-protein coding RNA 2204	ncRNA
193455	chr6	30500421	30501250	+	0	NA	Intergenic	Intergenic	11326	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
75822	chr15	69413151	69413250	+	0	NA	intron (NR_132969, intron 1 of 1)	MER39|LTR|ERV1	-1149	NR_160295	9493		NM_004856	ENSG00000137807	KIF23	CDA3|CDAIII|CDAN3|CDAN3A|CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
117641	chr19	23699171	23699930	+	0	NA	Intergenic	L1PB1|LINE|L1	-12338	NM_138330	171392		NM_138330	ENSG00000197372	ZNF675	TBZF|TIZ	zinc finger protein 675	protein-coding
210192	chr7	98875621	98876030	+	0	NA	Intergenic	Intergenic	-2665	NM_001244580	8295		NM_003496	ENSG00000196367	TRRAP	DEDDFA|DFNA75|PAF350/400|PAF400|STAF40|TR-AP|Tra1	transformation/transcription domain associated protein	protein-coding
121975	chr19	48492831	48494700	+	0	NA	exon (NM_001080434, exon 13 of 16)	exon (NM_001080434, exon 13 of 16)	19424	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
58062	chr12	124520921	124521280	+	0	NA	intron (NM_001077261, intron 2 of 47)	intron (NM_001077261, intron 2 of 47)	46512	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
20178	chr1	193042621	193042880	+	0	NA	intron (NM_001350842, intron 3 of 11)	L2c|LINE|L2	14665	NR_135615	107397392		NR_135615	ENSG00000238754	SCARNA18B	-	small Cajal body-specific RNA 18B	ncRNA
166652	chr3	119944251	119944580	+	0	NA	intron (NM_001146156, intron 3 of 10)	L2|LINE|L2	140233	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
88422	chr16	84724651	84725180	+	0	NA	intron (NM_001272075, intron 2 of 14)	intron (NM_001272075, intron 2 of 14)	24915	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
57186	chr12	121444471	121444630	+	0	NA	promoter-TSS (NR_106957)	promoter-TSS (NR_106957)	-198	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
208625	chr7	72971201	72971980	+	0	NA	intron (NR_104007, intron 3 of 3)	intron (NR_104007, intron 3 of 3)	1908	NR_104007	100101148		NR_104007		FKBP6P1	-	FKBP6 pseudogene 1	pseudo
201428	chr6	147194951	147195450	+	0	NA	intron (NR_034115, intron 1 of 10)	intron (NR_034115, intron 1 of 10)	-9158	NM_001127715	134957		NM_139244	ENSG00000164506	STXBP5	LGL3|LLGL3|Nbla04300	syntaxin binding protein 5	protein-coding
3912	chr1	17336071	17336330	+	0	NA	exon (NM_012387, exon 4 of 16)	exon (NM_012387, exon 4 of 16)	28003	NM_012387	23569		NM_012387	ENSG00000159339	PADI4	PAD|PAD4|PADI5|PDI4|PDI5	peptidyl arginine deiminase 4	protein-coding
73514	chr15	43776221	43778280	+	0	NA	promoter-TSS (NM_025165)	promoter-TSS (NM_025165)	164	NM_001199877	10169		NM_005770	ENSG00000140264	SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
77716	chr15	85697071	85697630	+	0	NA	intron (NM_007200, intron 17 of 36)	AluSg|SINE|Alu	61375	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
197090	chr6	56916721	56916980	+	0	NA	intron (NM_001374736, intron 2 of 103)	intron (NM_001374736, intron 2 of 103)	37980	NM_001374722	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
52170	chr12	54295571	54296080	+	0	NA	promoter-TSS (NM_006163)	promoter-TSS (NM_006163)	-46	NM_006163	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
125236	chr2	10384371	10384700	+	0	NA	intron (NM_001258359, intron 1 of 4)	L2b|LINE|L2	15771	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
224400	chr9	14347801	14348200	+	0	NA	intron (NM_001369468, intron 1 of 8)	CpG	-25613	NM_001369466	4781		NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
10250	chr1	63893001	63893200	+	0	NA	intron (NM_001083592, intron 1 of 6)	intron (NM_001083592, intron 1 of 6)	119083	NM_005012	4919		NM_005012	ENSG00000185483	ROR1	NTRKR1|dJ537F10.1	receptor tyrosine kinase like orphan receptor 1	protein-coding
210049	chr7	95247051	95247150	+	0	NA	intron (NM_017650, intron 7 of 15)	intron (NM_017650, intron 7 of 15)	77432	NM_000446	5444		NM_000446	ENSG00000005421	PON1	ESA|MVCD5|PON	paraoxonase 1	protein-coding
36723	chr11	9201801	9202000	+	0	NA	intron (NM_001243254, intron 4 of 22)	L1MC4|LINE|L1	63426	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
175087	chr4	54105101	54105300	+	0	NA	Intergenic	Intergenic	5037	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
127944	chr2	46540501	46540700	+	0	NA	intron (NM_001371283, intron 1 of 3)	intron (NM_001371283, intron 1 of 3)	-1890	NM_012249	23433		NM_012249	ENSG00000119729	RHOQ	ARHQ|HEL-S-42|RASL7A|TC10|TC10A	ras homolog family member Q	protein-coding
159549	chr3	14648651	14648950	+	0	NA	Intergenic	Intergenic	-2946	NR_135523	51244		NM_016474	ENSG00000154781	CCDC174	C3orf19|HSPC212|IHPM|IHPMR|ctr1	coiled-coil domain containing 174	protein-coding
95684	chr17	38419051	38419950	+	0	NA	Intergenic	CpG	-8964	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
54245	chr12	82685501	82686180	+	0	NA	Intergenic	Intergenic	-1066	NM_152588	160335		NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane O-mannosyltransferase targeting cadherins 2	protein-coding
227194	chr9	87971601	87971800	+	0	NA	intron (NM_012119, intron 2 of 6)	intron (NM_012119, intron 2 of 6)	2833	NM_001170639	23552		NM_012119	ENSG00000156345	CDK20	CCRK|CDCH|P42|PNQALRE	cyclin dependent kinase 20	protein-coding
35057	chr11	598221	598750	+	0	NA	exon (NM_001286581, exon 9 of 18).2	exon (NM_001286581, exon 9 of 18).2	17465	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
126103	chr2	25913301	25913500	+	0	NA	Intergenic	Intergenic	-34913	NM_018263	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
36188	chr11	3279071	3279230	+	0	NA	Intergenic	MER57E1|LTR|ERV1	-46733	NM_001039165	116534		NM_001039165	ENSG00000184350	MRGPRE	GPR167|MGRF|MRGE	MAS related GPR family member E	protein-coding
144969	chr20	37194001	37194200	+	0	NA	intron (NM_001324306, intron 2 of 15)	L2b|LINE|L2	-14552	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
43036	chr11	74016001	74016400	+	0	NA	intron (NM_001286577, intron 32 of 32)	L2b|LINE|L2	-6963	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
100826	chr17	64103871	64104250	+	0	NA	intron (NM_001433, intron 1 of 21)	AluJo|SINE|Alu	26084	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
92963	chr17	17075321	17075830	+	0	NA	intron (NM_015134, intron 1 of 22)	intron (NM_015134, intron 1 of 22)	33118	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
135853	chr2	170822121	170822630	+	0	NA	intron (NM_000817, intron 3 of 16)	CpG-16738	5488	NM_000817	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
13161	chr1	111747201	111747700	+	0	NA	non-coding (NR_038951, exon 3 of 3)	non-coding (NR_038951, exon 3 of 3)	7609	NR_038952	100506343		NR_038951	ENSG00000227811	INKA2-AS1	FAM212B-AS1	INKA2 antisense RNA 1	ncRNA
163521	chr3	51497651	51498030	+	0	NA	intron (NM_014703, intron 1 of 25)	intron (NM_014703, intron 1 of 25)	2162	NM_001171904	9730		NM_014703	ENSG00000145041	DCAF1	RIP|VPRBP	DDB1 and CUL4 associated factor 1	protein-coding
147916	chr20	62905421	62905980	+	0	NA	3' UTR (NM_080796, exon 6 of 6)	3' UTR (NM_080796, exon 6 of 6)	20805	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
19215	chr1	172487651	172487750	+	0	NA	Intergenic	Intergenic	34807	NM_001300760	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
232546	chr9	136345401	136346030	+	0	NA	intron (NM_001145638, intron 9 of 13)	intron (NM_001145638, intron 9 of 13)	-7342	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
50557	chr12	48084101	48084400	+	0	NA	intron (NM_001267594, intron 5 of 17)	intron (NM_001267594, intron 5 of 17)	-21003	NM_001354741	5213		NM_000289	ENSG00000152556	PFKM	ATP-PFK|GSD7|PFK-1|PFK-A|PFK1|PFKA|PFKX|PPP1R122	phosphofructokinase, muscle	protein-coding
59648	chr13	28268751	28269150	+	0	NA	intron (NM_175854, intron 12 of 18)	intron (NM_175854, intron 12 of 18)	-129776	NR_029383	100288730		NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
122299	chr19	49105501	49106000	+	0	NA	intron (NM_003089, intron 8 of 9)	AluSg7|SINE|Alu	-8620	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
86449	chr16	66926771	66927330	+	0	NA	Intergenic	Intergenic	-1514	NM_001128850	6236		NM_004165	ENSG00000166592	RRAD	RAD|RAD1|REM3	RRAD, Ras related glycolysis inhibitor and calcium channel regulator	protein-coding
21228	chr1	204162351	204162900	+	0	NA	intron (NM_000537, intron 1 of 9)	intron (NM_000537, intron 1 of 9)	3712	NM_000537	5972		NM_000537	ENSG00000143839	REN	ADTKD4|HNFJ2|RTD	renin	protein-coding
110942	chr19	2838671	2838830	+	0	NA	Intergenic	Intergenic	-2725	NM_001172775	148254		NM_152791	ENSG00000186300	ZNF555	-	zinc finger protein 555	protein-coding
234326	chrX	14028471	14028700	+	0	NA	intron (NM_001042479, intron 1 of 4)	intron (NM_001042479, intron 1 of 4)	1307	NM_017856	54960		NM_017856	ENSG00000046647	GEMIN8	FAM51A1	gem nuclear organelle associated protein 8	protein-coding
45630	chr11	118927601	118929100	+	0	NA	Intergenic	Intergenic	-2424	NM_001378213	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
186279	chr5	134542951	134543250	+	0	NA	intron (NM_001289985, intron 3 of 11)	AluSg|SINE|Alu	16992	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
13868	chr1	117758551	117759330	+	0	NA	Intergenic	Intergenic	152892	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
14618	chr1	145430901	145431180	+	0	NA	Intergenic	Intergenic	-25262	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
202453	chr6	158057551	158057850	+	0	NA	intron (NM_003898, intron 6 of 26)	LTR79|LTR|ERVL	40607	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
131725	chr2	98081821	98082120	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-5197	NR_144296	200403		NM_144992	ENSG00000168658	VWA3B	SCAR22	von Willebrand factor A domain containing 3B	protein-coding
183217	chr5	76283751	76283930	+	0	NA	intron (NM_014979, intron 4 of 12)	intron (NM_014979, intron 4 of 12)	-119445	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
36881	chr11	10628651	10628950	+	0	NA	exon (NM_130385, exon 6 of 21)	exon (NM_130385, exon 6 of 21)	23478	NM_001098579	10335		NM_130385	ENSG00000072952	IRAG1	IRAG|JAW1L|MRVI1	inositol 1,4,5-triphosphate receptor associated 1	protein-coding
45727	chr11	119106301	119108000	+	0	NA	promoter-TSS (NM_001290474)	promoter-TSS (NM_001290474)	-194	NM_001382611	9854		NM_014807	ENSG00000172375	C2CD2L	DLNB23|TMEM24	C2CD2 like	protein-coding
106052	chr18	9082521	9083430	+	0	NA	Intergenic	Intergenic	-19724	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
116260	chr19	17623221	17623900	+	0	NA	intron (NM_001080421, intron 34 of 41)	intron (NM_001080421, intron 34 of 41)	64639	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
26470	chr10	17643551	17644730	+	0	NA	promoter-TSS (NM_001324288)	promoter-TSS (NM_001324288)	-11	NM_001324283	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
58973	chr13	19859871	19860450	+	0	NA	intron (NM_001039649, intron 2 of 4)	AluSx1|SINE|Alu	3476	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
121641	chr19	47471401	47472580	+	0	NA	promoter-TSS (NM_015063)	promoter-TSS (NM_015063)	-97	NM_015063	6543		NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
117975	chr19	33375271	33375430	+	0	NA	intron (NM_001252296, intron 1 of 1)	intron (NM_001252296, intron 1 of 1)	826	NM_001252296	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
77388	chr15	83010751	83012700	+	0	NA	promoter-TSS (NM_001160116)	promoter-TSS (NM_001160116)	-86	NM_001160114	123207		NM_144597	ENSG00000169609	C15orf40	-	chromosome 15 open reading frame 40	protein-coding
142666	chr20	5920171	5920480	+	0	NA	intron (NM_001819, intron 3 of 4)	intron (NM_001819, intron 3 of 4)	8815	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
1777	chr1	6037151	6038230	+	0	NA	intron (NM_001199860, intron 1 of 15)	intron (NM_001199860, intron 1 of 15)	3002	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
222938	chr8	143022671	143023280	+	0	NA	TTS (NM_002346)	TTS (NM_002346)	4446	NM_002346	4061		NM_002346	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	lymphocyte antigen 6 family member E	protein-coding
198879	chr6	109454001	109455200	+	0	NA	intron (NM_001286613, intron 1 of 24)	intron (NM_001286613, intron 1 of 24)	1172	NM_022765	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
187309	chr5	141610321	141611130	+	0	NA	intron (NM_005219, intron 1 of 27)	AluSg4|SINE|Alu	8275	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
22283	chr1	212759971	212760400	+	0	NA	intron (NM_015471, intron 4 of 5)	L1MA3|LINE|L1	31592	NM_001297739	25936		NM_015471	ENSG00000117697	NSL1	C1orf48|DC8|MIS14	NSL1 component of MIS12 kinetochore complex	protein-coding
177673	chr4	121736721	121737030	+	0	NA	Intergenic	Intergenic	-27710	NR_024365	100192379		NR_024365	ENSG00000226757	PP12613	-	uncharacterized LOC100192379	ncRNA
93097	chr17	17665751	17665850	+	0	NA	Intergenic	AluSx1|SINE|Alu	11888	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
51770	chr12	53326801	53327250	+	0	NA	3' UTR (NM_001173467, exon 3 of 3)	3' UTR (NM_001173467, exon 3 of 3)	-5415	NM_001173466	8086		NM_015665	ENSG00000094914	AAAS	AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003	aladin WD repeat nucleoporin	protein-coding
27080	chr10	27252051	27253200	+	0	NA	promoter-TSS (NR_003525)	promoter-TSS (NR_003525)	-319	NR_003525	387646		NM_001006604	ENSG00000230445	LRRC37A6P	LRRC37E	leucine rich repeat containing 37 member A6, pseudogene	pseudo
111944	chr19	4794801	4795450	+	0	NA	3' UTR (NM_018708, exon 1 of 1)	3' UTR (NM_018708, exon 1 of 1)	3391	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
129059	chr2	65070821	65071080	+	0	NA	intron (NM_015147, intron 2 of 6)	intron (NM_015147, intron 2 of 6)	14534	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
107799	chr18	51182601	51183000	+	0	NA	intron (NM_016626, intron 1 of 1)	intron (NM_016626, intron 1 of 1)	14881	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
237797	chrX	129850801	129851000	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-7014	NM_016032	51114		NM_016032	ENSG00000188706	ZDHHC9	CGI89|CXorf11|DHHC9|MMSA1|MRXSR|MRXSZ|ZDHHC10|ZNF379|ZNF380	zinc finger DHHC-type palmitoyltransferase 9	protein-coding
119339	chr19	39958871	39959780	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-11680	NM_153001	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
22076	chr1	211353071	211354130	+	0	NA	intron (NM_001319207, intron 2 of 10)	intron (NM_001319207, intron 2 of 10)	7236	NM_145759	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
77512	chr15	84662001	84662200	+	0	NA	Intergenic	Intergenic	-3901	NM_021077	4828		NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
203892	chr7	1487321	1487980	+	0	NA	intron (NM_001080453, intron 19 of 47)	intron (NM_001080453, intron 19 of 47)	16739	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
4622	chr1	22104551	22105300	+	0	NA	Intergenic	L1MB8|LINE|L1	38172	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
177774	chr4	122757751	122758330	+	0	NA	Intergenic	Intergenic	25336	NM_152618	166379		NM_152618	ENSG00000181004	BBS12	C4orf24	Bardet-Biedl syndrome 12	protein-coding
49288	chr12	19893971	19894730	+	0	NA	Intergenic	Intergenic	-120335	NR_040098	100506393		NR_040098	ENSG00000256287	LINC02398	-	long intergenic non-protein coding RNA 2398	ncRNA
31813	chr10	98937471	98937630	+	0	NA	intron (NM_001166246, intron 3 of 12)	L1PA3|LINE|L1	-12982	NR_106762	102465253		NR_106762	ENSG00000274056	MIR6507	hsa-mir-6507	microRNA 6507	ncRNA
115886	chr19	16577751	16578800	+	0	NA	intron (NM_004831, intron 2 of 2)	intron (NM_004831, intron 2 of 2)	-5860	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
150667	chr21	43434071	43434230	+	0	NA	Intergenic	Intergenic	-7019	NM_001320643	102724428		NM_001320643	ENSG00000275993	LOC102724428	SIK|SIK-1|SIK1|SIK1B|SNF1LK	salt inducible kinase 1B (putative)	protein-coding
98195	chr17	46121021	46121300	+	0	NA	intron (NM_015443, intron 2 of 14).2	L2a|LINE|L2	71622	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
67666	chr14	73117251	73117600	+	0	NA	intron (NM_021239, intron 18 of 18)	AluSx1|SINE|Alu	-19082	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
63340	chr13	114023021	114023450	+	0	NA	intron (NM_001320822, intron 8 of 23).2	intron (NM_001320822, intron 8 of 23).2	-49159	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
206959	chr7	38266321	38267130	+	0	NA	intron (NM_001003806, intron 1 of 3)	intron (NM_001003806, intron 1 of 3)	6922	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
136957	chr2	190383651	190383850	+	0	NA	Intergenic	AluSc8|SINE|Alu	-23826	NM_001375989	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
211194	chr7	102606271	102606430	+	0	NA	intron (NM_001079877, intron 4 of 19)	AluSx|SINE|Alu	10406	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
186122	chr5	134143801	134144900	+	0	NA	intron (NM_201632, intron 8 of 8)	intron (NM_201632, intron 8 of 8)	20732	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
194147	chr6	32034371	32034530	+	0	NA	intron (NM_001242823, intron 38 of 40).6	intron (NM_001242823, intron 38 of 40).6	-3965	NM_001368144	1589		NM_000500	ENSG00000231852	CYP21A2	CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B	cytochrome P450 family 21 subfamily A member 2	protein-coding
124240	chr19	57392801	57393000	+	0	NA	intron (NM_152909, intron 1 of 2)	intron (NM_152909, intron 1 of 2)	3046	NM_001172773	147694		NM_152909	ENSG00000188785	ZNF548	-	zinc finger protein 548	protein-coding
229602	chr9	123640821	123641180	+	0	NA	intron (NR_148208, intron 9 of 20)	intron (NR_148208, intron 9 of 20)	-155378	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
56015	chr12	110354201	110354580	+	0	NA	Intergenic	L1MC3|LINE|L1	47559	NM_001385210	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
232742	chr9	136650401	136650800	+	0	NA	intron (NR_135132, intron 1 of 1)	AluSx1|SINE|Alu	-8256	NR_046367	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
171745	chr3	198098651	198099400	+	0	NA	Intergenic	Intergenic	-18354	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
98408	chr17	46591301	46592050	+	0	NA	intron (NR_040116, intron 1 of 19).2	intron (NR_040116, intron 1 of 19).2	941	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
98160	chr17	46046471	46046830	+	0	NA	intron (NM_015443, intron 7 of 14).2	AluSx4|SINE|Alu	47400	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
40351	chr11	63960401	63960800	+	0	NA	Intergenic	AluJb|SINE|Alu	-14020	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
44685	chr11	111298801	111299130	+	0	NA	promoter-TSS (NM_001136105)	promoter-TSS (NM_001136105)	125	NM_001271457	120376		NM_001136105	ENSG00000214290	POU2AF3	C11orf93|CASC13|COLCA2|LOH11CR1G|OCA-T2	POU class 2 homeobox associating factor 3	protein-coding
49939	chr12	39807151	39807250	+	0	NA	intron (NR_135051, intron 18 of 18)	L1MD2|LINE|L1	181017	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
81206	chr16	4496271	4496430	+	0	NA	intron (NM_001286267, intron 2 of 6)	AluSz|SINE|Alu	492	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
113126	chr19	8309821	8310480	+	0	NA	intron (NR_135539, intron 4 of 4)	AluSq2|SINE|Alu	-1792	NM_001165895	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
46053	chr11	122721801	122722700	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	66528	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
136607	chr2	178521471	178521980	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-1102	NR_038272	100506866		NR_038271	ENSG00000237298	TTN-AS1	-	TTN antisense RNA 1	ncRNA
173467	chr4	8630521	8630830	+	0	NA	Intergenic	Intergenic	37910	NM_001014447	8532		NM_003652	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
206609	chr7	35818171	35818330	+	0	NA	intron (NM_001788, intron 1 of 12)	L1MB7|LINE|L1	17031	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
148107	chr20	63381671	63382430	+	0	NA	Intergenic	Intergenic	-20701	NR_046317	1137		NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	cholinergic receptor nicotinic alpha 4 subunit	protein-coding
92072	chr17	7521171	7521530	+	0	NA	Intergenic	AluSg7|SINE|Alu	-27708	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
213620	chr7	139523451	139524080	+	0	NA	promoter-TSS (NM_001353368)	promoter-TSS (NM_001353368)	80	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
235319	chrX	42948551	42949290	+	0	NA	Intergenic	Intergenic	-170757	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
105317	chr17	82573451	82573750	+	0	NA	intron (NM_004514, intron 4 of 8)	(CA)n|Simple_repeat|Simple_repeat	53868	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
229952	chr9	126682771	126683730	+	0	NA	intron (NM_001174147, intron 2 of 7)	CpG	69322	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
30480	chr10	79246371	79246530	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-101019	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
91384	chr17	4569621	4570080	+	0	NA	Intergenic	Intergenic	-9273	NM_001122890	124975		NM_153338	ENSG00000167741	GGT6	-	gamma-glutamyltransferase 6	protein-coding
105084	chr17	82105801	82106880	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-8104	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
124573	chr2	671351	672000	+	0	NA	intron (NM_001352680, intron 4 of 5)	intron (NM_001352680, intron 4 of 5)	5029	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
225969	chr9	41167551	41167730	+	0	NA	intron (NM_001378116, intron 5 of 12).2	intron (NM_001378116, intron 5 of 12).2	21667	NM_001378116	445571		NM_201453	ENSG00000196873	ZNG1C	CBWD3|bA561O23.1	Zn regulated GTPase metalloprotein activator 1C	protein-coding
151130	chr21	44893771	44893930	+	0	NA	intron (NM_001127491, intron 9 of 15)	L2c|LINE|L2	-19947	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
231008	chr9	129511351	129511650	+	0	NA	intron (NR_038955, intron 4 of 4)	intron (NR_038955, intron 4 of 4)	22840	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
211929	chr7	112461271	112461780	+	0	NA	intron (NM_001550, intron 5 of 11)	intron (NM_001550, intron 5 of 11)	9467	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
34553	chr10	133123301	133123500	+	0	NA	intron (NM_001291085, intron 2 of 3)	intron (NM_001291085, intron 2 of 3)	21154	NM_001291085	84435		NM_032422	ENSG00000197177	ADGRA1	GPR123	adhesion G protein-coupled receptor A1	protein-coding
234688	chrX	20376221	20376480	+	0	NA	Intergenic	Intergenic	-109441	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
40896	chr11	65131071	65132830	+	0	NA	intron (NM_172230, intron 6 of 15)	intron (NM_172230, intron 6 of 15)	-1972	NR_106809	102465449		NR_106809	ENSG00000284489	MIR6751	hsa-mir-6751	microRNA 6751	ncRNA
70597	chr14	102779751	102780700	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	2746	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
2220	chr1	8831121	8831930	+	0	NA	Intergenic	L1MCa|LINE|L1	-13885	NM_001042681	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
61754	chr13	74247921	74248430	+	0	NA	intron (NR_144451, intron 1 of 1)	MamRep605|LTR?|LTR?	16731	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
33416	chr10	118694671	118695030	+	0	NA	intron (NM_153810, intron 6 of 8)	intron (NM_153810, intron 6 of 8)	60120	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
235013	chrX	39935951	39936250	+	0	NA	Intergenic	Intergenic	98539	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
234415	chrX	16798601	16798800	+	0	NA	intron (NM_001168683, intron 1 of 7)	AluJo|SINE|Alu	12234	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
93129	chr17	17724571	17725280	+	0	NA	intron (NM_030665, intron 2 of 5)	CpG-10767	41377	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
41330	chr11	65914621	65915050	+	0	NA	Intergenic	L2c|LINE|L2	4227	NM_031450	83638		NM_031450	ENSG00000175573	C11orf68	BLES03|P5326	chromosome 11 open reading frame 68	protein-coding
192170	chr6	17633051	17634350	+	0	NA	intron (NM_001278209, intron 17 of 22)	intron (NM_001278209, intron 17 of 22)	33398	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
122277	chr19	49066001	49066830	+	0	NA	Intergenic	Intergenic	-2548	NM_006179	4909		NM_006179	ENSG00000225950	NTF4	GLC10|GLC1O|NT-4|NT-4/5|NT-5|NT4|NT5|NTF5	neurotrophin 4	protein-coding
97107	chr17	42486671	42487230	+	0	NA	intron (NM_001378547, intron 9 of 19)	intron (NM_001378547, intron 9 of 19)	-7823	NR_049845	100847030		NR_049845	ENSG00000264314	MIR548AT	-	microRNA 548at	ncRNA
73226	chr15	41659121	41659380	+	0	NA	Intergenic	Intergenic	-1162	NM_001164273	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
186297	chr5	134566171	134566530	+	0	NA	exon (NM_015288, exon 9 of 11)	exon (NM_015288, exon 9 of 11)	40242	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
141131	chr2	239137581	239138480	+	0	NA	intron (NM_006037, intron 9 of 26)	intron (NM_006037, intron 9 of 26)	-52104	NR_039643	100616493		NR_039643	ENSG00000264810	MIR4441	-	microRNA 4441	ncRNA
115507	chr19	15418401	15419780	+	0	NA	promoter-TSS (NM_001291478)	promoter-TSS (NM_001291478)	-102	NM_001291478	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
187003	chr5	139746901	139748580	+	0	NA	Intergenic	CpG	-1517	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
8107	chr1	39191351	39192930	+	0	NA	intron (NM_012090, intron 1 of 92)	AluSz6|SINE|Alu	107973	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
65498	chr14	51882721	51883430	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	22463	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
17393	chr1	156619221	156620300	+	0	NA	intron (NM_021817, intron 1 of 6)	intron (NM_021817, intron 1 of 6)	345	NM_021817	60484		NM_021817	ENSG00000132702	HAPLN2	BRAL1	hyaluronan and proteoglycan link protein 2	protein-coding
173838	chr4	20916001	20916500	+	0	NA	intron (NM_147182, intron 2 of 8)	intron (NM_147182, intron 2 of 8)	-33540	NM_025221	80333		NM_025221	ENSG00000185774	KCNIP4	CALP|KCHIP4	potassium voltage-gated channel interacting protein 4	protein-coding
79005	chr16	18151	18450	+	0	NA	Intergenic	Intergenic	-1181	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
45915	chr11	120793771	120794630	+	0	NA	intron (NM_001282473, intron 3 of 17)	intron (NM_001282473, intron 3 of 17)	24915	NR_133008	105369532		NR_133008		LOC105369532	-	uncharacterized LOC105369532	ncRNA
222074	chr8	130334271	130335000	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-38102	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
80153	chr16	2093971	2094530	+	0	NA	intron (NM_001009944, intron 34 of 45)	intron (NM_001009944, intron 34 of 45)	2814	NR_135175	105371049		NR_135175	ENSG00000259933	PKD1-AS1	-	PKD1 antisense RNA 1	ncRNA
125062	chr2	9623371	9624330	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	7147	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
155401	chr22	38348121	38348380	+	0	NA	intron (NR_002821, intron 4 of 4)	intron (NR_002821, intron 4 of 4)	-30166	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
111022	chr19	3059371	3059530	+	0	NA	intron (NM_198969, intron 2 of 6)	AluSz|SINE|Alu	3045	NM_001130	166		NM_001130	ENSG00000104964	TLE5	AES|AES-1|AES-2|ESP1|GRG|GRG5|Grg-5	TLE family member 5, transcriptional modulator	protein-coding
142698	chr20	8144901	8145680	+	0	NA	intron (NM_015192, intron 1 of 31)	MLT1B|LTR|ERVL-MaLR	13024	NM_182734	23236		NM_015192	ENSG00000182621	PLCB1	DEE12|EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B	phospholipase C beta 1	protein-coding
66362	chr14	61467201	61467950	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	102619	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
135289	chr2	160181101	160181500	+	0	NA	intron (NM_001282389, intron 4 of 14)	L1PA7|LINE|L1	18972	NM_001282390	3694		NM_000888	ENSG00000115221	ITGB6	AI1H	integrin subunit beta 6	protein-coding
55953	chr12	110008751	110009330	+	0	NA	intron (NM_033121, intron 1 of 14)	L1MB7|LINE|L1	9610	NM_033121	88455		NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
205287	chr7	10643521	10643830	+	0	NA	intron (NR_147499, intron 1 of 2)	intron (NR_147499, intron 1 of 2)	-59001	NR_149037	100131472		NR_149037		LOC100131472	-	uncharacterized LOC100131472	ncRNA
183854	chr5	87101401	87101800	+	0	NA	Intergenic	Intergenic	13354	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
145400	chr20	41577351	41577650	+	0	NA	intron (NM_032221, intron 1 of 36)	intron (NM_032221, intron 1 of 36)	40877	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
65105	chr14	41749201	41749830	+	0	NA	intron (NM_001346173, intron 1 of 4)	L1PA14|LINE|L1	142659	NM_001330106	145581		NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
206731	chr7	36624071	36624430	+	0	NA	intron (NM_001177506, intron 6 of 21)	MER51B|LTR|ERV1	-24130	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
119033	chr19	38944821	38946700	+	0	NA	intron (NM_148169, intron 4 of 5).2	intron (NM_148169, intron 4 of 5).2	6927	NM_148169	115290		NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
178991	chr4	163495971	163496700	+	0	NA	intron (NM_018352, intron 1 of 6)	MIR|SINE|MIR	1645	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
129353	chr2	68765921	68768100	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	-7900	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
160258	chr3	25649371	25649530	+	0	NA	intron (NM_001330700, intron 1 of 35)	L1MB2|LINE|L1	14922	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
104718	chr17	81558671	81558830	+	0	NA	non-coding (NR_130140, exon 3 of 3)	non-coding (NR_130140, exon 3 of 3)	-6397	NM_025161	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
180610	chr5	16467221	16467950	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-1785	NM_033414	90441		NM_033414	ENSG00000173545	ZNF622	ZPR9	zinc finger protein 622	protein-coding
197523	chr6	75934951	75935550	+	0	NA	intron (NM_001563, intron 14 of 16)	intron (NM_001563, intron 14 of 16)	137412	NM_001563	3617		NM_001563	ENSG00000112706	IMPG1	GP147|IPM150|RP91|SPACR|VMD4	interphotoreceptor matrix proteoglycan 1	protein-coding
166427	chr3	113746801	113748080	+	0	NA	intron (NM_001690, intron 1 of 14)	intron (NM_001690, intron 1 of 14)	405	NM_001690	523		NM_001690	ENSG00000114573	ATP6V1A	ARCL2D|ATP6A1|ATP6V1A1|DEE93|HO68|IECEE3|VA68|VPP2|Vma1	ATPase H+ transporting V1 subunit A	protein-coding
60124	chr13	39016671	39017250	+	0	NA	intron (NM_170719, intron 9 of 11)	intron (NM_170719, intron 9 of 11)	21116	NM_170719	80209		NM_025138	ENSG00000120685	PROSER1	C13orf23	proline and serine rich 1	protein-coding
5311	chr1	25226671	25226830	+	0	NA	intron (NM_015484, intron 5 of 6)	AluJr4|SINE|Alu	5752	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
7378	chr1	32883171	32883330	+	0	NA	Intergenic	AluY|SINE|Alu	-3241	NM_002143	3208		NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
35441	chr11	1447251	1447750	+	0	NA	intron (NM_001256630, intron 12 of 19)	intron (NM_001256630, intron 12 of 19)	33386	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
31449	chr10	95907101	95908280	+	0	NA	promoter-TSS (NM_001130446)	promoter-TSS (NM_001130446)	-285	NM_001349008	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
202188	chr6	156193471	156193630	+	0	NA	Intergenic	L1PA13|LINE|L1	-185200	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
82316	chr16	15681301	15681700	+	0	NA	intron (NM_017668, intron 4 of 8)	AluJb|SINE|Alu	31255	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
133428	chr2	119174471	119174730	+	0	NA	Intergenic	Intergenic	-15849	NM_182528	165257		NM_182528	ENSG00000144119	C1QL2	C1QTNF10|CTRP10	complement C1q like 2	protein-coding
122026	chr19	48621471	48621830	+	0	NA	intron (NM_001243876, intron 2 of 5)	LTR15|LTR|ERV1	2144	NM_001204158	56848		NM_020126	ENSG00000063176	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding
49106	chr12	14764671	14764830	+	0	NA	Intergenic	Intergenic	6381	NM_175054	121504		NM_175054	ENSG00000197837	H4C16	H4-16|H4/p|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST4H4	H4 histone 16	protein-coding
81881	chr16	11677921	11678850	+	0	NA	TTS (NM_001324025)	TTS (NM_001324025)	9930	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
85889	chr16	57057551	57058050	+	0	NA	intron (NM_001384959, intron 27 of 46)	(GTG)n|Simple_repeat|Simple_repeat	-34783	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
14034	chr1	120743871	120744030	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	20011	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
13378	chr1	113927271	113927850	+	0	NA	non-coding (NR_110725, exon 3 of 5)	non-coding (NR_110725, exon 3 of 5)	1698	NR_110725	101928846		NR_110725	ENSG00000235527	HIPK1-AS1	-	HIPK1 antisense RNA 1	ncRNA
30266	chr10	75138001	75138200	+	0	NA	intron (NM_144660, intron 1 of 4)	LTR67B|LTR|ERVL	26444	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
192723	chr6	26359471	26359830	+	0	NA	Intergenic	AluSz|SINE|Alu	-5509	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
42629	chr11	72237801	72238750	+	0	NA	TTS (NM_005169)	TTS (NM_005169)	5901	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
152309	chr22	20337971	20338200	+	0	NA	promoter-TSS (NR_165637)	promoter-TSS (NR_165637)	55	NR_165637	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
78489	chr15	92918901	92919280	+	0	NA	intron (NM_001042572, intron 2 of 12)	AluSq|SINE|Alu	14691	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
195914	chr6	41740401	41740800	+	0	NA	TTS (NM_001166424)	TTS (NM_001166424)	-4377	NM_001167827	7942		NM_007162	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
126915	chr2	32627051	32628600	+	0	NA	promoter-TSS (NM_017735)	promoter-TSS (NM_017735)	-225	NM_001193509	55622		NM_017735	ENSG00000018699	TTC27	-	tetratricopeptide repeat domain 27	protein-coding
100595	chr17	63441371	63441530	+	0	NA	promoter-TSS (NM_001017917)	promoter-TSS (NM_001017917)	-623	NM_001017917	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
48227	chr12	8230901	8231100	+	0	NA	TTS (NR_024254)	TTS (NR_024254)	-3382	NM_018088	55138		NM_018088	ENSG00000171847	FAM90A1	-	family with sequence similarity 90 member A1	protein-coding
239306	chrY	16026541	16026650	+	0	NA	Intergenic	L1PA3|LINE|L1	-1222562	NR_046504	100874056		NR_046504	ENSG00000228787	NLGN4Y-AS1	NLGN4Y-AS|NLGN4YAS	NLGN4Y antisense RNA 1	ncRNA
69916	chr14	99514721	99515450	+	0	NA	3' UTR (NM_001144995, exon 6 of 6)	3' UTR (NM_001144995, exon 6 of 6)	33676	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
50231	chr12	46233851	46234500	+	0	NA	intron (NM_001278387, intron 4 of 17)	intron (NM_001278387, intron 4 of 17)	32341	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
159772	chr3	16304451	16305830	+	0	NA	3' UTR (NM_001330670, exon 9 of 9)	3' UTR (NM_001330670, exon 9 of 9)	39928	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
81188	chr16	4480271	4480430	+	0	NA	intron (NM_001286268, intron 1 of 5).2	AluSz|SINE|Alu	3952	NM_002134	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
97309	chr17	43235701	43236580	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2163	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
137088	chr2	190928451	190929050	+	0	NA	intron (NM_014905, intron 12 of 17)	L1MC5|LINE|L1	47929	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
203725	chr7	1104771	1104930	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	16737	NM_001098201	2852		NM_001505	ENSG00000164850	GPER1	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER	G protein-coupled estrogen receptor 1	protein-coding
61274	chr13	50115371	50115530	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	10091	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
181219	chr5	39177501	39178490	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	41568	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
130894	chr2	87430721	87431300	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-24417	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
125178	chr2	10076551	10077750	+	0	NA	intron (NM_001037160, intron 1 of 2)	L2|LINE|L2	3261	NM_001037160	192668		NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
213402	chr7	137424851	137424950	+	0	NA	intron (NM_001321708, intron 28 of 32)	L1PA3|LINE|L1	-81167	NM_001321387	5764		NM_002825	ENSG00000105894	PTN	HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1	pleiotrophin	protein-coding
144806	chr20	36729001	36729250	+	0	NA	intron (NR_038370, intron 1 of 13)	intron (NR_038370, intron 1 of 13)	16965	NM_022477	57446		NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
93327	chr17	18189251	18189550	+	0	NA	intron (NM_017758, intron 1 of 3)	AluY|SINE|Alu	5572	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
10934	chr1	84150651	84150950	+	0	NA	intron (NM_182948, intron 1 of 9)	MSTB|LTR|ERVL-MaLR	6529	NM_001300916	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
81723	chr16	11286751	11286850	+	0	NA	Intergenic	L1MC3|LINE|L1	-5470	NM_002761	5619		NM_002761	ENSG00000175646	PRM1	CT94.1|P1	protamine 1	protein-coding
209015	chr7	74306001	74306600	+	0	NA	intron (NM_032421, intron 1 of 15)	intron (NM_032421, intron 1 of 15)	16893	NM_003388	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
198846	chr6	109363171	109363330	+	0	NA	Intergenic	LTR41|LTR|ERVL	18489	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
20361	chr1	197917021	197917280	+	0	NA	promoter-TSS (NM_001370213)	promoter-TSS (NM_001370213)	-222	NM_020204	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
188289	chr5	151142621	151143330	+	0	NA	intron (NM_001363114, intron 2 of 24)	intron (NM_001363114, intron 2 of 24)	-1291	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
13667	chr1	116562451	116563250	+	0	NA	intron (NR_026665, intron 1 of 5)	THE1B|LTR|ERVL-MaLR	-2739	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
14817	chr1	146293401	146294130	+	0	NA	Intergenic	Intergenic	-4008	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
229420	chr9	121321101	121321600	+	0	NA	exon (NM_001127667, exon 12 of 19)	exon (NM_001127667, exon 12 of 19)	21519	NM_000177	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
149595	chr21	33301321	33301600	+	0	NA	Intergenic	Intergenic	-22935	NM_001384504	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
191758	chr6	14044101	14044330	+	0	NA	Intergenic	AluY|SINE|Alu	-73041	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
204394	chr7	3038201	3038980	+	0	NA	intron (NM_001324281, intron 1 of 25)	intron (NM_001324281, intron 1 of 25)	5277	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
88920	chr16	87821201	87822230	+	0	NA	Intergenic	Intergenic	12945	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
26063	chr10	12724701	12724900	+	0	NA	TTS (NR_031752)	TTS (NR_031752)	553	NR_031752	100313841		NR_031752	ENSG00000221331	MIR548Q	-	microRNA 548q	ncRNA
192624	chr6	26115301	26115700	+	0	NA	intron (NM_001381989, intron 1 of 1)	intron (NM_001381989, intron 1 of 1)	-7365	NM_005323	3010		NM_005323	ENSG00000187475	H1-6	H1.6|H1FT|H1t|HIST1H1T|dJ221C16.2	H1.6 linker histone, cluster member	protein-coding
59847	chr13	30465601	30466800	+	0	NA	promoter-TSS (NM_002128)	promoter-TSS (NM_002128)	-223	NM_001363661	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
189465	chr5	173058651	173059030	+	0	NA	intron (NM_001168393, intron 1 of 3)	AluSx3|SINE|Alu	2488	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
73703	chr15	45116371	45117250	+	0	NA	TTS (NM_001276268)	TTS (NM_001276268)	2484	NM_207581	405753		NM_207581	ENSG00000140274	DUOXA2	SIMNIPHOM|TDH5	dual oxidase maturation factor 2	protein-coding
95643	chr17	37844271	37844930	+	0	NA	non-coding (NR_024178, exon 7 of 7)	non-coding (NR_024178, exon 7 of 7)	40143	NR_024178	284100		NM_001129906	ENSG00000290810	YWHAEP7	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7	pseudo
237542	chrX	120457021	120457300	+	0	NA	intron (NM_002294, intron 1 of 8)	intron (NM_002294, intron 1 of 8)	12136	NM_002294	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
26609	chr10	22320171	22322730	+	0	NA	5' UTR (NM_005180, exon 1 of 10)	5' UTR (NM_005180, exon 1 of 10)	351	NM_005180	648		NM_005180	ENSG00000168283	BMI1	FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1	BMI1 proto-oncogene, polycomb ring finger	protein-coding
46786	chr11	130071451	130072530	+	0	NA	intron (NM_001243299, intron 1 of 16)	intron (NM_001243299, intron 1 of 16)	1422	NM_001243299	334		NM_001642	ENSG00000084234	APLP2	APLP-2|APPH|APPL2|CDEBP	amyloid beta precursor like protein 2	protein-coding
216183	chr8	11806071	11806830	+	0	NA	intron (NM_001287745, intron 2 of 8)	intron (NM_001287745, intron 2 of 8)	-1493	NM_001287749	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
17023	chr1	156057251	156057350	+	0	NA	intron (NM_001145264, intron 2 of 2)	AluJr|SINE|Alu	2518	NM_001145264	28956		NM_014017	ENSG00000116586	LAMTOR2	ENDAP|HSPC003|MAPBPIP|MAPKSP1AP|ROBLD3|Ragulator2|p14	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding
142912	chr20	18056421	18057500	+	0	NA	intron (NM_001303461, intron 1 of 3)	CpG-17473	956	NM_021220	58495		NM_021220	ENSG00000125850	OVOL2	CHED|CHED1|CHED2|EUROIMAGE566589|PPCD1|ZNF339	ovo like zinc finger 2	protein-coding
175251	chr4	62595451	62595550	+	0	NA	Intergenic	LTR13|LTR|ERVK	-433735	NR_110595	101927186		NR_110595		ADGRL3-AS1	LPHN3-AS1	ADGRL3 antisense RNA 1	ncRNA
232411	chr9	136076001	136076800	+	0	NA	intron (NM_144653, intron 1 of 5)	L1MB3|LINE|L1	18889	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
99812	chr17	51540371	51540530	+	0	NA	Intergenic	Intergenic	105023	NR_146897	105371828		NR_146897	ENSG00000267452	LINC02073	-	long intergenic non-protein coding RNA 2073	ncRNA
142283	chr20	3218251	3218950	+	0	NA	exon (NM_001351739, exon 5 of 7)	exon (NM_001351739, exon 5 of 7)	9102	NM_181493	3704		NM_033453	ENSG00000125877	ITPA	C20orf37|DEE35|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3	inosine triphosphatase	protein-coding
172574	chr4	2461401	2461700	+	0	NA	intron (NM_001193282, intron 14 of 15)	intron (NM_001193282, intron 14 of 15)	-7556	NM_002938	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
163608	chr3	51992001	51992380	+	0	NA	Intergenic	Intergenic	3705	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
11557	chr1	91124501	91125380	+	0	NA	Intergenic	L2a|LINE|L2	-102685	NM_032186	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
184352	chr5	96975721	96975980	+	0	NA	intron (NM_175920, intron 1 of 17)	MER5C|DNA|hAT-Charlie	17417	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
105811	chr18	2955751	2956500	+	0	NA	intron (NM_001375809, intron 2 of 19)	L1MC4a|LINE|L1	-9502	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
213174	chr7	132434971	132436030	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	140970	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
12220	chr1	100404851	100405350	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	52594	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
83969	chr16	29226701	29227130	+	0	NA	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	-75372	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
16385	chr1	154401901	154402550	+	0	NA	TTS (NR_147855)	TTS (NR_147855)	-3118	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
105536	chr17	83136501	83136700	+	0	NA	Intergenic	Intergenic	55454	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
144587	chr20	35790351	35790650	+	0	NA	intron (NM_016436, intron 1 of 17)	AluSx|SINE|Alu	18485	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
163958	chr3	52934621	52935080	+	0	NA	exon (NM_016329, exon 5 of 21)	exon (NM_016329, exon 5 of 21)	-37302	NM_001198974	100526772		NM_001198974	ENSG00000248592	STIMATE-MUSTN1	TMEM110-MUSTN1	STIMATE-MUSTN1 readthrough	protein-coding
196253	chr6	42910051	42910350	+	0	NA	Intergenic	Intergenic	-5789	NM_001243169	171558		NM_138296	ENSG00000171611	PTCRA	PT-ALPHA|PTA	pre T cell antigen receptor alpha	protein-coding
234293	chrX	13687251	13687650	+	0	NA	Intergenic	Intergenic	-1671	NM_001195328	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
90638	chr17	1659921	1660650	+	0	NA	intron (NM_006445, intron 30 of 42)	intron (NM_006445, intron 30 of 42)	-10419	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
1725	chr1	5727971	5728130	+	0	NA	Intergenic	Intergenic	134691	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
201872	chr6	150641001	150641600	+	0	NA	intron (NR_138139, intron 2 of 4)	intron (NR_138139, intron 2 of 4)	8336	NR_138140	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
145622	chr20	44683521	44684050	+	0	NA	Intergenic	Intergenic	-12046	NR_034104	79015		NM_024049	ENSG00000283440	LINC01260	-	long intergenic non-protein coding RNA 1260	ncRNA
136365	chr2	176096521	176096800	+	0	NA	TTS (NM_000523)	TTS (NM_000523)	-3135	NM_021193	3238		NM_021193	ENSG00000170178	HOXD12	HOX4H	homeobox D12	protein-coding
9426	chr1	48236871	48237030	+	0	NA	intron (NM_001135181, intron 11 of 14)	intron (NM_001135181, intron 11 of 14)	14234	NM_001011547	200010		NM_001011547	ENSG00000117834	SLC5A9	SGLT4	solute carrier family 5 member 9	protein-coding
189572	chr5	175482651	175483030	+	0	NA	intron (NM_001322981, intron 1 of 9)	MIRc|SINE|MIR	4280	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
29816	chr10	72308201	72308900	+	0	NA	Intergenic	Intergenic	34626	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
224457	chr9	15504951	15505250	+	0	NA	intron (NM_001317898, intron 3 of 10)	AluJb|SINE|Alu	5189	NM_021144	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
114480	chr19	12749151	12749250	+	0	NA	TTS (NM_004317)	TTS (NM_004317)	-2591	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
156242	chr22	40396121	40396730	+	0	NA	intron (NM_001350047, intron 1 of 20)	AluSz|SINE|Alu	25831	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
102599	chr17	75905951	75906050	+	0	NA	Intergenic	MIR|SINE|MIR	-1116	NM_032478	64978		NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3|mL38	mitochondrial ribosomal protein L38	protein-coding
52527	chr12	56103701	56105980	+	0	NA	intron (NM_006191, intron 1 of 12)	CpG	281	NM_006191	5036		NM_006191	ENSG00000170515	PA2G4	EBP1|HG4-1|ITAF45|p38-2G4	proliferation-associated 2G4	protein-coding
232597	chr9	136423201	136423850	+	0	NA	3' UTR (NM_001282946, exon 13 of 13)	3' UTR (NM_001282946, exon 13 of 13)	12867	NM_015160	23203		NM_015160	ENSG00000165688	PMPCA	Alpha-MPP|CLA1|CPD3|INPP5E|MAS2|P-55|SCAR2	peptidase, mitochondrial processing subunit alpha	protein-coding
150305	chr21	41999471	41999630	+	0	NA	intron (NM_020727, intron 1 of 1)	MIR|SINE|MIR	-9644	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
231464	chr9	131289751	131290250	+	0	NA	exon (NM_032728, exon 1 of 2)	exon (NM_032728, exon 1 of 2)	277	NM_032728	84814		NM_032728	ENSG00000160539	PLPP7	C9orf67|NET39|PPAPDC3	phospholipid phosphatase 7 (inactive)	protein-coding
152003	chr22	19216671	19217030	+	0	NA	intron (NM_001835, intron 18 of 31)	intron (NM_001835, intron 18 of 31)	-37987	NR_046298	6576		NM_005984	ENSG00000100075	SLC25A1	CIC|CMS23|CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
2131	chr1	8320651	8321030	+	0	NA	intron (NM_001379618, intron 1 of 6)	intron (NM_001379618, intron 1 of 6)	2726	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
51250	chr12	51019471	51019830	+	0	NA	intron (NM_001174125, intron 1 of 15)	AluJb|SINE|Alu	6491	NM_001174129	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
108463	chr18	70559871	70560030	+	0	NA	Intergenic	L1MA4|LINE|L1	91004	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
117318	chr19	19509601	19510180	+	0	NA	TTS (NM_001384511)	TTS (NM_001384511)	5658	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
157398	chr22	44800721	44800980	+	0	NA	intron (NM_181335, intron 2 of 11)	intron (NM_181335, intron 2 of 11)	48275	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
140163	chr2	231617421	231617880	+	0	NA	Intergenic	MIR|SINE|MIR	24786	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
53393	chr12	64694801	64695200	+	0	NA	non-coding (NR_040718, exon 4 of 4)	non-coding (NR_040718, exon 4 of 4)	64406	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
84649	chr16	30724151	30724250	+	0	NA	exon (NM_006662, exon 25 of 34)	exon (NM_006662, exon 25 of 34)	13663	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
59725	chr13	29837821	29838080	+	0	NA	intron (NM_007106, intron 1 of 4)	L1MEg|LINE|L1	12667	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
85676	chr16	56359621	56360200	+	0	NA	Intergenic	LTR49-int|LTR|ERV1	65079	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
168320	chr3	141665621	141666100	+	0	NA	intron (NR_136190, intron 1 of 7)	GA-rich|Low_complexity|Low_complexity	2661	NR_136190	646730		NR_136190		LINC02618	-	long intergenic non-protein coding RNA 2618	ncRNA
233177	chr9	137191151	137191250	+	0	NA	TTS (NM_003731)	TTS (NM_003731)	2524	NM_003731	8636		NM_003731	ENSG00000176101	SSNA1	N14|NA-14|NA14	SS nuclear autoantigen 1	protein-coding
62526	chr13	99528371	99528750	+	0	NA	intron (NM_004800, intron 3 of 16)	Tigger8|DNA|TcMar-Tigger	27088	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
103179	chr17	77443701	77444000	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-6899	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
174221	chr4	37758051	37758350	+	0	NA	Intergenic	Intergenic	-68486	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
51451	chr12	52046871	52047230	+	0	NA	intron (NM_001202233, intron 2 of 7)	intron (NM_001202233, intron 2 of 7)	-4352	NM_002135	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
55459	chr12	104665051	104665350	+	0	NA	intron (NM_018413, intron 2 of 2)	MIRc|SINE|MIR	73567	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
16418	chr1	154501501	154502850	+	0	NA	promoter-TSS (NM_182499)	promoter-TSS (NM_182499)	-44	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
154013	chr22	30431771	30431930	+	0	NA	promoter-TSS (NR_148046)	promoter-TSS (NR_148046)	-836	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
114093	chr19	11115221	11115550	+	0	NA	intron (NM_001195800, intron 8 of 15)	AluJr|SINE|Alu	1911	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
236119	chrX	57528801	57529000	+	0	NA	Intergenic	L1M2|LINE|L1	-63111	NM_007157	158586		NM_007157	ENSG00000198455	ZXDB	ZNF905|dJ83L6.1	zinc finger X-linked duplicated B	protein-coding
61122	chr13	48503451	48503750	+	0	NA	intron (NM_001286832, intron 5 of 9)	AluJb|SINE|Alu	29480	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
106117	chr18	9184821	9185750	+	0	NA	intron (NM_001204056, intron 2 of 11)	L2c|LINE|L2	47722	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
158953	chr3	10193021	10193630	+	0	NA	intron (NM_001570, intron 2 of 12)	AluJb|SINE|Alu	28406	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
115495	chr19	15382001	15382630	+	0	NA	intron (NM_014371, intron 12 of 13)	AluSx3|SINE|Alu	-2528	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
155415	chr22	38400351	38400930	+	0	NA	Intergenic	Intergenic	-1714	NR_002821	400927		NM_001034843		TPTEP2	Z98749.2	TPTE pseudogene 2	pseudo
9480	chr1	50978821	50979280	+	0	NA	Intergenic	Intergenic	8805	NM_078626	1031		NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	cyclin dependent kinase inhibitor 2C	protein-coding
47820	chr12	6589651	6590150	+	0	NA	intron (NM_001273, intron 22 of 39)	L1MC4a|LINE|L1	-8291	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
151252	chr21	45304951	45305550	+	0	NA	Intergenic	Intergenic	17198	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
99942	chr17	57278221	57278480	+	0	NA	intron (NM_170721, intron 4 of 9)	intron (NM_170721, intron 4 of 9)	21331	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
83070	chr16	22357151	22358550	+	0	NA	intron (NM_001802, intron 2 of 4)	intron (NM_001802, intron 2 of 4)	16769	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
155688	chr22	39075921	39076210	+	0	NA	promoter-TSS (NM_001349437)	promoter-TSS (NM_001349437)	-940	NM_001349437	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
158603	chr3	4830931	4832080	+	0	NA	intron (NM_002222, intron 56 of 57)	intron (NM_002222, intron 56 of 57)	74996	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
188165	chr5	150447971	150448640	+	0	NA	intron (NM_005617, intron 1 of 4)	intron (NM_005617, intron 1 of 4)	1434	NM_005617	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
26751	chr10	22703871	22704030	+	0	NA	intron (NM_005028, intron 1 of 9)	L2a|LINE|L2	10158	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
185322	chr5	126788351	126788950	+	0	NA	intron (NR_134488, intron 1 of 11)	AluSz|SINE|Alu	11514	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
9823	chr1	53948951	53949380	+	0	NA	intron (NM_001256409, intron 2 of 8)	intron (NM_001256409, intron 2 of 8)	2815	NM_001256409	115353		NM_052940	ENSG00000116212	LRRC42	dJ167A19.4	leucine rich repeat containing 42	protein-coding
166969	chr3	125517901	125518400	+	0	NA	intron (NM_003794, intron 1 of 13)	intron (NM_003794, intron 1 of 13)	2052	NR_073435	8723		NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
109163	chr19	289671	290500	+	0	NA	intron (NM_177526, intron 1 of 5)	intron (NM_177526, intron 1 of 5)	1054	NM_177543	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
171620	chr3	197455371	197455600	+	0	NA	Intergenic	AluSz|SINE|Alu	54176	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
198942	chr6	110544351	110544950	+	0	NA	Intergenic	Intergenic	-68037	NM_033125	85413		NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
169984	chr3	179560971	179561130	+	0	NA	Intergenic	AluJr|SINE|Alu	-1830	NM_177989	86		NM_004301	ENSG00000136518	ACTL6A	ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K|SMARCN1	actin like 6A	protein-coding
225427	chr9	35068921	35069600	+	0	NA	intron (NM_007126, intron 1 of 16)	intron (NM_007126, intron 1 of 16)	3048	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
180860	chr5	32605451	32606000	+	0	NA	Intergenic	L1MC4|LINE|L1	20168	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
144652	chr20	36063921	36065530	+	0	NA	Intergenic	CpG	-13765	NR_027451	647979		NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
11932	chr1	93712571	93712930	+	0	NA	intron (NM_001261408, intron 2 of 13)	MIRb|SINE|MIR	-30913	NM_003567	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
211467	chr7	105098101	105098650	+	0	NA	intron (NM_182931, intron 15 of 26)	AluJr4|SINE|Alu	84170	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
77632	chr15	85443271	85444250	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	63157	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
76907	chr15	78031551	78032200	+	0	NA	intron (NM_144572, intron 3 of 12)	L1MEc|LINE|L1	-37650	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
200296	chr6	132818251	132818350	+	0	NA	TTS (NM_001016)	TTS (NM_001016)	1081	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
212594	chr7	129053001	129053230	+	0	NA	intron (NR_167926, intron 1 of 21)	AluSx|SINE|Alu	1996	NM_001382222	23534		NM_012470	ENSG00000064419	TNPO3	IPO12|LGMD1F|LGMDD2|MTR10A|TRN-SR|TRN-SR2|TRNSR	transportin 3	protein-coding
60272	chr13	40612921	40614080	+	0	NA	intron (NM_002015, intron 1 of 2)	Eulor9A|DNA|DNA	53141	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
34314	chr10	132148371	132148730	+	0	NA	intron (NM_001323090, intron 14 of 23)	intron (NM_001323090, intron 14 of 23)	-38398	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
213745	chr7	140417301	140417700	+	0	NA	intron (NM_001008749, intron 3 of 3)	intron (NM_001008749, intron 3 of 3)	13442	NM_001008749	401409		NM_001008749	ENSG00000146955	RAB19	RAB19B	RAB19, member RAS oncogene family	protein-coding
4333	chr1	20492271	20492430	+	0	NA	Intergenic	Intergenic	-6140	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
4285	chr1	19798071	19798680	+	0	NA	intron (NM_181719, intron 1 of 15)	intron (NM_181719, intron 1 of 15)	974	NM_001349115	255104		NM_181719	ENSG00000162542	TMCO4	-	transmembrane and coiled-coil domains 4	protein-coding
12421	chr1	101389151	101389450	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	65463	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
191327	chr6	7073671	7074480	+	0	NA	Intergenic	Intergenic	-33668	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
234401	chrX	16722371	16722730	+	0	NA	intron (NR_033181, intron 1 of 8)	intron (NR_033181, intron 1 of 8)	2938	NR_033181	94056		NM_032796	ENSG00000169895	SYAP1	BSTA|PRO3113	synapse associated protein 1	protein-coding
173194	chr4	6780671	6781280	+	0	NA	Intergenic	Intergenic	-1752	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
158704	chr3	7881971	7882130	+	0	NA	Intergenic	L1PA15|LINE|L1	134257	NR_110131	101927394		NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
222829	chr8	142483351	142484530	+	0	NA	intron (NM_001702, intron 11 of 30)	intron (NM_001702, intron 11 of 30)	34291	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
29946	chr10	73479101	73479500	+	0	NA	intron (NM_001142354, intron 2 of 12)	intron (NM_001142354, intron 2 of 12)	-16452	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
182730	chr5	68261551	68262180	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-26654	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
144902	chr20	36943251	36943350	+	0	NA	intron (NM_001363733, intron 2 of 15)	MER3|DNA|hAT-Charlie	8408	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
199278	chr6	111868851	111869500	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	3896	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
220547	chr8	100705501	100705700	+	0	NA	exon (NM_002568, exon 12 of 15)	exon (NM_002568, exon 12 of 15)	-2576	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
27559	chr10	32347001	32347900	+	0	NA	promoter-TSS (NM_025209)	promoter-TSS (NM_025209)	86	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
191243	chr6	5866481	5867580	+	0	NA	Intergenic	Intergenic	137014	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
70749	chr14	103395071	103396350	+	0	NA	intron (NM_002376, intron 1 of 15)	HAL1|LINE|L1	10295	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
69846	chr14	99250701	99251700	+	0	NA	intron (NM_001282237, intron 2 of 3)	MIR3|SINE|MIR	20997	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
152530	chr22	20978671	20980080	+	0	NA	intron (NM_144704, intron 17 of 20)	CpG-18803	-2922	NM_006767	8216		NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|NS2|SWNTS2	leucine zipper like post translational regulator 1	protein-coding
188504	chr5	154861001	154861200	+	0	NA	intron (NM_001301075, intron 1 of 5)	intron (NM_001301075, intron 1 of 5)	2473	NM_001301075	9337		NM_004779	ENSG00000155508	CNOT8	CAF1|CALIF|Caf1b|POP2|hCAF1	CCR4-NOT transcription complex subunit 8	protein-coding
110436	chr19	1977201	1977480	+	0	NA	intron (NM_001319, intron 2 of 11)	intron (NM_001319, intron 2 of 11)	-22791	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
10047	chr1	58578551	58578850	+	0	NA	Intergenic	AluSp|SINE|Alu	-1448	NM_002353	4070		NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor associated calcium signal transducer 2	protein-coding
200268	chr6	132614651	132614980	+	0	NA	Intergenic	Intergenic	3278	NM_014626	9287		NM_014626	ENSG00000146378	TAAR2	GPR58|taR-2	trace amine associated receptor 2	protein-coding
94883	chr17	31532151	31532450	+	0	NA	3' UTR (NM_001346747, exon 12 of 12)	3' UTR (NM_001346747, exon 12 of 12)	-2583	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
49433	chr12	24740571	24741500	+	0	NA	Intergenic	MIRb|SINE|MIR	-156867	NR_029451	144360		NM_144667	ENSG00000197503	LINC00477	C12orf67|FAM191B	long intergenic non-protein coding RNA 477	ncRNA
139803	chr2	230324351	230324650	+	0	NA	Intergenic	Intergenic	-2671	NM_001308163	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
217288	chr8	27365501	27367400	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	40886	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
142816	chr20	16701301	16701600	+	0	NA	Intergenic	Intergenic	-28576	NM_198220	6629		NM_003092	ENSG00000125870	SNRPB2	Msl1|U2B''	small nuclear ribonucleoprotein polypeptide B2	protein-coding
220825	chr8	102831721	102832180	+	0	NA	intron (NM_148174, intron 9 of 11)	intron (NM_148174, intron 9 of 11)	25128	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
197158	chr6	59567721	59568180	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1606504	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
6134	chr1	27363601	27364400	+	0	NA	exon (NM_001297609, exon 4 of 28)	exon (NM_001297609, exon 4 of 28)	2961	NM_001297609	9064		NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
191570	chr6	11976571	11976730	+	0	NA	Intergenic	Intergenic	24594	NR_125853	101928253		NR_125853	ENSG00000225102	LOC101928253	-	uncharacterized LOC101928253	ncRNA
173929	chr4	25376821	25378250	+	0	NA	exon (NM_001286756, exon 2 of 29)	exon (NM_001286756, exon 2 of 29)	272	NM_013367	29945		NM_013367	ENSG00000053900	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
92593	chr17	9470071	9470830	+	0	NA	intron (NM_004853, intron 6 of 7)	intron (NM_004853, intron 6 of 7)	105370	NM_004853	9482		NM_004853	ENSG00000170310	STX8	CARB	syntaxin 8	protein-coding
198024	chr6	90135901	90136300	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	160743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
142531	chr20	5027651	5028180	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-17602	NM_203327	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
196748	chr6	45422501	45424830	+	0	NA	intron (NM_001278478, intron 1 of 5)	CpG	1390	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
80213	chr16	2162601	2163000	+	0	NA	intron (NM_032271, intron 1 of 20)	intron (NM_032271, intron 1 of 20)	7018	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
22438	chr1	220296271	220296500	+	0	NA	Intergenic	Intergenic	-23932	NM_012414	25782		NM_012414	ENSG00000118873	RAB3GAP2	MARTS1|RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating non-catalytic protein subunit 2	protein-coding
122844	chr19	50459271	50459430	+	0	NA	intron (NM_004533, intron 23 of 27)	intron (NM_004533, intron 23 of 27)	-17157	NM_206538	284361		NM_175063	ENSG00000161671	EMC10	C19orf63|HSM1|HSS1|NEDDFAS	ER membrane protein complex subunit 10	protein-coding
107508	chr18	47929901	47932080	+	0	NA	promoter-TSS (NM_005901)	promoter-TSS (NM_005901)	-118	NM_001003652	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
59917	chr13	30870351	30870680	+	0	NA	Intergenic	Intergenic	-12047	NR_103813	440132		NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA
154319	chr22	32000371	32000530	+	0	NA	intron (NR_149128, intron 4 of 4)	intron (NR_149128, intron 4 of 4)	29627	NR_149128	105372999		NR_149128		LINC02558	-	long intergenic non-protein coding RNA 2558	ncRNA
205235	chr7	8015121	8015950	+	0	NA	intron (NM_138426, intron 2 of 7)	intron (NM_138426, intron 2 of 7)	46739	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
60625	chr13	42320471	42320830	+	0	NA	3' UTR (NM_016248, exon 13 of 13)	3' UTR (NM_016248, exon 13 of 13)	48498	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
114399	chr19	12618471	12618980	+	0	NA	intron (NM_153358, intron 1 of 3)	AluSq|SINE|Alu	7805	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
5949	chr1	26889621	26891280	+	0	NA	promoter-TSS (NM_018066)	promoter-TSS (NM_018066)	-167	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
157366	chr22	44701551	44703180	+	0	NA	5' UTR (NM_181333, exon 1 of 8)	5' UTR (NM_181333, exon 1 of 8)	161	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
168577	chr3	149008351	149008650	+	0	NA	intron (NM_001184720, intron 4 of 6)	L2b|LINE|L2	16960	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
5377	chr1	25429501	25433050	+	0	NA	intron (NM_001282564, intron 1 of 8)	CpG	378	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
228120	chr9	96644401	96645200	+	0	NA	intron (NM_153698, intron 5 of 5)	intron (NM_153698, intron 5 of 5)	10517	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
50430	chr12	47541721	47541980	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	126842	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
14947	chr1	147665651	147665750	+	0	NA	intron (NR_136635, intron 1 of 9)	intron (NR_136635, intron 1 of 9)	4824	NR_136634	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
94721	chr17	30718201	30718550	+	0	NA	intron (NR_144394, intron 1 of 8)	intron (NR_144394, intron 1 of 8)	8767	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
76336	chr15	74419801	74420700	+	0	NA	intron (NM_001146029, intron 1 of 12)	L3b|LINE|CR1	-8818	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
128626	chr2	61327171	61327930	+	0	NA	intron (NM_014709, intron 20 of 79)	intron (NM_014709, intron 20 of 79)	89827	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
88656	chr16	85650371	85650530	+	0	NA	intron (NM_001278184, intron 2 of 14)	intron (NM_001278184, intron 2 of 14)	37128	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
67681	chr14	73140571	73141650	+	0	NA	intron (NM_007318, intron 1 of 11)	MLT1H2|LTR|ERVL-MaLR	4603	NM_007318	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
35240	chr11	840951	841050	+	0	NA	intron (NM_021128, intron 1 of 1)	intron (NM_021128, intron 1 of 1)	1529	NM_021128	5441		NM_021128	ENSG00000177700	POLR2L	RBP10|RPABC5|RPB10|RPB10beta|RPB7.6|hRPB7.6	RNA polymerase II, I and III subunit L	protein-coding
201976	chr6	152232851	152233400	+	0	NA	intron (NM_033071, intron 111 of 145)	intron (NM_033071, intron 111 of 145)	-47747	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
32363	chr10	102391621	102391880	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-2360	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
30806	chr10	84535251	84535350	+	0	NA	Intergenic	AluY|SINE|Alu	110131	NM_001284242	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
75563	chr15	67037001	67037400	+	0	NA	intron (NR_135686, intron 2 of 5)	intron (NR_135686, intron 2 of 5)	26982	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
21193	chr1	203824721	203824980	+	0	NA	intron (NM_001376350, intron 4 of 17)	AluSx|SINE|Alu	27327	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
211838	chr7	108524421	108524780	+	0	NA	intron (NM_001256011, intron 1 of 10)	AluSx|SINE|Alu	1535	NM_001256007	50640		NM_015723	ENSG00000135241	PNPLA8	IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma	patatin like phospholipase domain containing 8	protein-coding
110897	chr19	2721051	2722100	+	0	NA	promoter-TSS (NM_145173)	promoter-TSS (NM_145173)	-203	NM_145173	148252		NM_145173	ENSG00000176490	DIRAS1	Di-Ras1|GBTS1|RIG	DIRAS family GTPase 1	protein-coding
18064	chr1	160639651	160639900	+	0	NA	intron (NR_104400, intron 1 of 4)	L2a|LINE|L2	7269	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
150817	chr21	43973151	43973450	+	0	NA	intron (NM_020132, intron 7 of 9)	intron (NM_020132, intron 7 of 9)	-39009	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
58479	chr12	132148721	132149090	+	0	NA	intron (NM_024078, intron 9 of 14)	CpG-6292	4448	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
228674	chr9	107309101	107309900	+	0	NA	intron (NM_001244724, intron 4 of 9)	intron (NM_001244724, intron 4 of 9)	24731	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
135504	chr2	161993471	161993630	+	0	NA	intron (NR_166824, intron 25 of 25)	intron (NR_166824, intron 25 of 25)	80665	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
201588	chr6	149341371	149341700	+	0	NA	intron (NM_015093, intron 2 of 8)	MIRb|SINE|MIR	23235	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
231222	chr9	129964101	129964680	+	0	NA	intron (NM_001363755, intron 4 of 15)	intron (NM_001363755, intron 4 of 15)	78799	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
9573	chr1	51871801	51872000	+	0	NA	intron (NM_002525, intron 1 of 32)	AluSx1|SINE|Alu	6140	NM_001242361	4898		NM_002525	ENSG00000078618	NRDC	NRD1|hNRD1|hNRD2	nardilysin convertase	protein-coding
23310	chr1	228081821	228084300	+	0	NA	promoter-TSS (NM_001024228)	promoter-TSS (NM_001024228)	-74	NM_001024228	375		NM_001658	ENSG00000143761	ARF1	PVNH8	ADP ribosylation factor 1	protein-coding
5325	chr1	25241221	25242380	+	0	NA	TTS (NR_135778)	TTS (NR_135778)	5654	NR_135786	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
148098	chr20	63326201	63326400	+	0	NA	intron (NM_020882, intron 30 of 35)	intron (NM_020882, intron 30 of 35)	33114	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
140310	chr2	232486301	232486700	+	0	NA	exon (NM_004826, exon 2 of 18)	exon (NM_004826, exon 2 of 18)	1334	NM_001290787	9427		NM_004826	ENSG00000171551	ECEL1	DA5D|DINE|ECEX|XCE	endothelin converting enzyme like 1	protein-coding
102708	chr17	76154001	76154200	+	0	NA	non-coding (NR_040017, exon 8 of 8)	non-coding (NR_040017, exon 8 of 8)	-12855	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
18998	chr1	169484921	169486750	+	0	NA	5' UTR (NM_006996, exon 1 of 6)	5' UTR (NM_006996, exon 1 of 6)	109	NM_006996	10560		NM_006996	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 member 2	protein-coding
203996	chr7	1812351	1812850	+	0	NA	Intergenic	Intergenic	31653	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
189888	chr5	177331251	177331850	+	0	NA	TTS (NM_006816)	TTS (NM_006816)	-19652	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
105661	chr18	2589451	2590750	+	0	NA	exon (NM_006101, exon 10 of 17)	exon (NM_006101, exon 10 of 17)	18543	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
65604	chr14	52240451	52240550	+	0	NA	Intergenic	Intergenic	-27198	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
227448	chr9	90755771	90756080	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-45675	NM_001174168	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
218971	chr8	61700071	61700950	+	0	NA	intron (NM_032466, intron 1 of 13)	intron (NM_032466, intron 1 of 13)	-10699	NM_001164752	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
126378	chr2	27491671	27491830	+	0	NA	TTS (NM_022823)	TTS (NM_022823)	-2007	NM_015662	26160		NM_015662	ENSG00000138002	IFT172	BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim	intraflagellar transport 172	protein-coding
167021	chr3	126355171	126355500	+	0	NA	intron (NM_014079, intron 1 of 2)	intron (NM_014079, intron 1 of 2)	2073	NM_014079	28999		NM_014079	ENSG00000163884	KLF15	KKLF	KLF transcription factor 15	protein-coding
208518	chr7	70301801	70302000	+	0	NA	intron (NM_015570, intron 4 of 18)	AluJb|SINE|Alu	703425	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
110391	chr19	1937971	1938130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3122	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
37672	chr11	27220001	27220200	+	0	NA	promoter-TSS (NR_125766)	promoter-TSS (NR_125766)	13	NR_125767	103695435		NR_125766	ENSG00000254560	BBOX1-AS1	-	BBOX1 antisense RNA 1	ncRNA
150311	chr21	42003821	42004400	+	0	NA	intron (NM_001320731, intron 1 of 3)	AluSx1|SINE|Alu	-5084	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
73018	chr15	40766821	40767550	+	0	NA	3' UTR (NM_018163, exon 11 of 11)	3' UTR (NM_018163, exon 11 of 11)	-2795	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
239233	chrY	12948401	12949000	+	0	NA	Intergenic	(CAA)n|Simple_repeat|Simple_repeat	42995	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
182398	chr5	61327821	61328800	+	0	NA	Intergenic	Intergenic	-3948	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
46761	chr11	129813621	129815070	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-1436	NM_001331212	120224		NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
101924	chr17	74464801	74465330	+	0	NA	Intergenic	Intergenic	-1308	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
96237	chr17	39802121	39802480	+	0	NA	intron (NM_001257408, intron 2 of 6)	intron (NM_001257408, intron 2 of 6)	-24075	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
12509	chr1	108125551	108125880	+	0	NA	Intergenic	Intergenic	67120	NM_213651	29957		NM_013386	ENSG00000085491	SLC25A24	APC1|SCAMC-1|SCAMC1	solute carrier family 25 member 24	protein-coding
170047	chr3	182791121	182791380	+	0	NA	Intergenic	AluSc|SINE|Alu	-2254	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
172225	chr4	1325751	1326050	+	0	NA	intron (NM_001017405, intron 4 of 8)	intron (NM_001017405, intron 4 of 8)	16109	NM_001297433	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
238923	chrX	154736001	154736200	+	0	NA	intron (NR_104114, intron 1 of 8)	intron (NR_104114, intron 1 of 8)	14977	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
215089	chr7	155009371	155009790	+	0	NA	Intergenic	Intergenic	6147	NR_028090	202781		NR_028090	ENSG00000273344	PAXIP1-DT	PAXIP1-AS1	PAXIP1 divergent transcript	ncRNA
83463	chr16	27362771	27363530	+	0	NA	exon (NM_001257407, exon 11 of 11)	exon (NM_001257407, exon 11 of 11)	-39024	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
184184	chr5	95823401	95823560	+	0	NA	promoter-TSS (NM_001243659)	promoter-TSS (NM_001243659)	-607	NM_001243659	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
53023	chr12	57552571	57553180	+	0	NA	intron (NM_001354705, intron 1 of 25)	intron (NM_001354705, intron 1 of 25)	2831	NM_004984	3798		NM_004984	ENSG00000155980	KIF5A	ALS25|D12S1889|MY050|NEIMY|NKHC|SPG10	kinesin family member 5A	protein-coding
232405	chr9	136050071	136050430	+	0	NA	exon (NM_144653, exon 2 of 6)	exon (NM_144653, exon 2 of 6)	45039	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
59652	chr13	28408501	28408730	+	0	NA	intron (NM_002019, intron 10 of 29)	intron (NM_002019, intron 10 of 29)	86513	NM_002019	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
157730	chr22	46578701	46579100	+	0	NA	intron (NM_001366660, intron 1 of 17)	intron (NM_001366660, intron 1 of 17)	1812	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
109310	chr19	576751	577250	+	0	NA	intron (NM_001322243, intron 1 of 7)	intron (NM_001322243, intron 1 of 7)	4404	NM_198589	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
193590	chr6	30690651	30691530	+	0	NA	promoter-TSS (NR_073065).4	promoter-TSS (NR_073065).4	-106	NM_001270709	11270		NM_007243	ENSG00000137404	NRM	NRM29	nurim	protein-coding
47738	chr12	6495771	6496130	+	0	NA	intron (NM_014865, intron 2 of 31)	intron (NM_014865, intron 2 of 31)	1848	NM_014865	9918		NM_014865	ENSG00000010292	NCAPD2	CAP-D2|CNAP1|MCPH21|hCAP-D2	non-SMC condensin I complex subunit D2	protein-coding
2286	chr1	8955351	8955850	+	0	NA	intron (NM_001215, intron 2 of 7)	intron (NM_001215, intron 2 of 7)	9732	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
86984	chr16	68214521	68214980	+	0	NA	intron (NM_004555, intron 10 of 10)	intron (NM_004555, intron 10 of 10)	18749	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
229856	chr9	126375471	126375630	+	0	NA	intron (NM_033446, intron 2 of 9)	HAL1|LINE|L1	34954	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
7890	chr1	36472051	36472750	+	0	NA	intron (NM_172313, intron 7 of 17)	intron (NM_172313, intron 7 of 17)	-8016	NM_031280	64960		NM_031280	ENSG00000116898	MRPS15	DC37|MPR-S15|RPMS15|S15mt|uS15m	mitochondrial ribosomal protein S15	protein-coding
111208	chr19	3477671	3478030	+	0	NA	intron (NM_001136503, intron 3 of 3)	(ATGG)n|Simple_repeat|Simple_repeat	2675	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
228773	chr9	110417301	110417500	+	0	NA	intron (NM_153366, intron 36 of 47)	L1HS|LINE|L1	-79516	NM_001286947	255220		NM_001003936	ENSG00000204193	TXNDC8	SPTRX-3|SPTRX3|TRX6|bA427L11.2	thioredoxin domain containing 8	protein-coding
203640	chr7	969951	971130	+	0	NA	intron (NM_001031617, intron 2 of 2)	AluSx1|SINE|Alu	5009	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
47569	chr12	4355921	4356200	+	0	NA	3' UTR (NM_020375, exon 6 of 6)	3' UTR (NM_020375, exon 6 of 6)	23652	NM_020638	8074		NM_020638	ENSG00000118972	FGF23	ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC	fibroblast growth factor 23	protein-coding
39196	chr11	57478951	57479530	+	0	NA	Intergenic	Intergenic	18712	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
105805	chr18	2935551	2936250	+	0	NA	intron (NM_001375809, intron 7 of 19)	intron (NM_001375809, intron 7 of 19)	10723	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
103146	chr17	77408451	77408830	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	3563	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
147731	chr20	62391301	62392800	+	0	NA	intron (NM_031215, intron 8 of 9)	L2|LINE|L2	4947	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
115982	chr19	17074071	17077100	+	0	NA	promoter-TSS (NM_001130065)	promoter-TSS (NM_001130065)	-52	NM_001011699	93323		NM_033417	ENSG00000131351	HAUS8	DGT4|HICE1|NY-SAR-48	HAUS augmin like complex subunit 8	protein-coding
45845	chr11	119384051	119384550	+	0	NA	intron (NR_034160, intron 1 of 3)	L2b|LINE|L2	2522	NR_034160	100499227		NR_034160		USP2-AS1	THY1-AS1|gLINC	USP2 antisense RNA 1	ncRNA
163481	chr3	50673121	50673380	+	0	NA	Intergenic	Intergenic	-1677	NM_004947	1795		NM_004947	ENSG00000088538	DOCK3	MOCA|NEDIDHA|PBP	dedicator of cytokinesis 3	protein-coding
171402	chr3	196198521	196199480	+	0	NA	intron (NR_135618, intron 5 of 7)	intron (NR_135618, intron 5 of 7)	12400	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
58600	chr12	132476851	132477850	+	0	NA	Intergenic	Intergenic	-12801	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
115213	chr19	14488351	14488850	+	0	NA	intron (NM_202470, intron 1 of 6)	AluSg|SINE|Alu	7527	NM_202470	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
155293	chr22	38114301	38115150	+	0	NA	intron (NM_003560, intron 14 of 16)	intron (NM_003560, intron 14 of 16)	-4041	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
8936	chr1	44034551	44035550	+	0	NA	Intergenic	Intergenic	-3588	NM_001328630	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
60752	chr13	44769271	44769430	+	0	NA	Intergenic	Intergenic	40280	NR_038433	144817		NR_038433	ENSG00000235097	LINC00330	NCRNA00330	long intergenic non-protein coding RNA 330	ncRNA
94130	chr17	28250651	28250750	+	0	NA	Intergenic	CpG	3256	NR_002181	23614		NM_021092	ENSG00000290672	PPY2P	PPY2	pancreatic polypeptide 2, pseudogene	pseudo
217794	chr8	33547621	33547880	+	0	NA	TTS (NM_024787)	TTS (NM_024787)	19378	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
230409	chr9	128116451	128116650	+	0	NA	intron (NR_033374, intron 2 of 4)	intron (NR_033374, intron 2 of 4)	2184	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
100407	chr17	60422701	60422900	+	0	NA	intron (NM_181707, intron 1 of 5)	intron (NM_181707, intron 1 of 5)	311	NM_181707	124773		NM_181707	ENSG00000141371	CHCT1	C17orf64	CHD1 helical C-terminal domain containing 1	protein-coding
98694	chr17	47895001	47897050	+	0	NA	promoter-TSS (NM_003110)	promoter-TSS (NM_003110)	-209	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
209334	chr7	76203971	76204580	+	0	NA	intron (NM_001291831, intron 1 of 15)	intron (NM_001291831, intron 1 of 15)	2379	NM_001110199	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
30281	chr10	75209651	75211430	+	0	NA	intron (NM_001184823, intron 1 of 9)	CpG	386	NM_001184783	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
201949	chr6	151723271	151723430	+	0	NA	intron (NM_001385570, intron 2 of 8)	HAL1|LINE|L1	32823	NM_001385570	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
119500	chr19	40472371	40472530	+	0	NA	intron (NM_020971, intron 1 of 35)	AluJo|SINE|Alu	5449	NM_020971	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
131947	chr2	99335451	99336800	+	0	NA	intron (NM_005783, intron 1 of 4)	CpG	208	NM_005783	10190		NM_005783	ENSG00000115514	TXNDC9	APACD|PHLP3	thioredoxin domain containing 9	protein-coding
209001	chr7	74269351	74270550	+	0	NA	Intergenic	Intergenic	-15492	NM_002914	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
171174	chr3	195654821	195655280	+	0	NA	Intergenic	Intergenic	-2891	NR_136186	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
116703	chr19	18439851	18440060	+	0	NA	Intergenic	AluJb|SINE|Alu	-1822	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
90382	chr17	1269471	1269630	+	0	NA	promoter-TSS (NM_001164405)	promoter-TSS (NM_001164405)	-894	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
144535	chr20	35715021	35715380	+	0	NA	intron (NM_184234, intron 10 of 16)	intron (NM_184234, intron 10 of 16)	15795	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
90518	chr17	1471201	1471400	+	0	NA	exon (NM_001080950, exon 20 of 32)	exon (NM_001080950, exon 20 of 32)	14101	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
81866	chr16	11654071	11655130	+	0	NA	Intergenic	Intergenic	-13855	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
36376	chr11	3968801	3969000	+	0	NA	intron (NM_001382568, intron 2 of 11)	MIRb|SINE|MIR	112838	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
176755	chr4	102210251	102210500	+	0	NA	Intergenic	L1PA2|LINE|L1	113937	NM_001135148	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
160644	chr3	31563821	31564280	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	31125	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
57667	chr12	122751271	122751680	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-1349	NM_003677	8562		NM_003677	ENSG00000139726	DENR	DRP|DRP1|SMAP-3	density regulated re-initiation and release factor	protein-coding
44184	chr11	96255021	96255580	+	0	NA	intron (NM_032427, intron 1 of 4)	MIRb|SINE|MIR	-86138	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
77415	chr15	83380671	83380830	+	0	NA	Intergenic	Intergenic	-66478	NM_001324183	6457		NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3 domain containing GRB2 like 3, endophilin A3	protein-coding
191821	chr6	14732721	14733350	+	0	NA	Intergenic	Intergenic	-447581	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
177145	chr4	108123621	108124630	+	0	NA	intron (NM_016269, intron 3 of 11)	AluJr|SINE|Alu	42672	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
135165	chr2	157630521	157630780	+	0	NA	Intergenic	AluY|SINE|Alu	-1786	NM_001111032	130399		NM_145259	ENSG00000123612	ACVR1C	ACVRLK7|ALK7	activin A receptor type 1C	protein-coding
6296	chr1	27617221	27617630	+	0	NA	intron (NM_001042747, intron 5 of 12)	MIRb|SINE|MIR	8815	NM_001042747	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
123522	chr19	54239621	54240850	+	0	NA	intron (NR_104098, intron 6 of 9).3	intron (NR_104098, intron 6 of 9).3	2555	NM_024318	79168		NM_024318	ENSG00000244482	LILRA6	CD85b|ILT-8|ILT5|ILT8|LILRB3|LILRB6	leukocyte immunoglobulin like receptor A6	protein-coding
37225	chr11	14454451	14454550	+	0	NA	Intergenic	AluSc|SINE|Alu	45311	NM_001144061	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
138322	chr2	203764921	203765180	+	0	NA	Intergenic	Intergenic	58411	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
39358	chr11	59559021	59559400	+	0	NA	Intergenic	L3b|LINE|CR1	35948	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
80335	chr16	2464401	2465000	+	0	NA	TTS (NR_106826)	TTS (NR_106826)	733	NR_106826	102465460		NR_106826	ENSG00000274805	MIR6768	hsa-mir-6768	microRNA 6768	ncRNA
187530	chr5	142587551	142587730	+	0	NA	Intergenic	LTR41C|LTR|ERVL	33694	NM_001257212	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
1711	chr1	5423121	5423630	+	0	NA	Intergenic	Intergenic	439366	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
101042	chr17	64797971	64798950	+	0	NA	intron (NR_024386, intron 6 of 10)	intron (NR_024386, intron 6 of 10)	-16461	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
126651	chr2	28956351	28957250	+	0	NA	Intergenic	Intergenic	-24498	NM_199280	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
149407	chr21	31177821	31178680	+	0	NA	intron (NM_001353694, intron 15 of 27)	intron (NM_001353694, intron 15 of 27)	-17310	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
116604	chr19	18272201	18273350	+	0	NA	intron (NM_001145304, intron 1 of 3)	AluY|SINE|Alu	1677	NM_001145304	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
209280	chr7	75925171	75925330	+	0	NA	intron (NM_001382657, intron 2 of 16)	AluJr|SINE|Alu	10053	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
147959	chr20	62970871	62971030	+	0	NA	Intergenic	Intergenic	18241	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
38740	chr11	46919821	46920700	+	0	NA	Intergenic	Intergenic	-1710	NM_002334	4038		NM_002334	ENSG00000134569	LRP4	CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2	LDL receptor related protein 4	protein-coding
217693	chr8	30122521	30123200	+	0	NA	intron (NM_001128208, intron 3 of 3)	L1M5|LINE|L1	21805	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
82298	chr16	15614271	15614630	+	0	NA	intron (NM_001184998, intron 16 of 26).2	AluY|SINE|Alu	-3355	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
20386	chr1	198161221	198161480	+	0	NA	intron (NM_133494, intron 1 of 9)	MER58A|DNA|hAT-Charlie	4352	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
16850	chr1	155707221	155707480	+	0	NA	intron (NM_033657, intron 1 of 12)	AluY|SINE|Alu	18256	NM_033657	7818		NM_004632	ENSG00000132676	DAP3	DAP-3|MRP-S29|MRPS29|S29mt|bMRP-10|mS29	death associated protein 3	protein-coding
236060	chrX	56382301	56382530	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	149257	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
203968	chr7	1565501	1566000	+	0	NA	Intergenic	AluJb|SINE|Alu	4282	NM_032302	84262		NM_032302	ENSG00000157778	PSMG3	C7orf48|PAC3	proteasome assembly chaperone 3	protein-coding
796	chr1	1545171	1545530	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	-4726	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
174843	chr4	48487551	48488400	+	0	NA	intron (NM_152679, intron 2 of 2)	AluSg7|SINE|Alu	-2277	NM_175619	326340		NM_175619	ENSG00000182223	ZAR1	Z3CXXC6	zygote arrest 1	protein-coding
220792	chr8	102650121	102650380	+	0	NA	exon (NM_005655, exon 4 of 4)	exon (NM_005655, exon 4 of 4)	3714	NR_103759	7071		NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	KLF transcription factor 10	protein-coding
78983	chr15	101653951	101654050	+	0	NA	3' UTR (NM_152334, exon 19 of 19)	3' UTR (NM_152334, exon 19 of 19)	-1609	NM_001307960	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
148066	chr20	63275701	63275900	+	0	NA	intron (NM_001281483, intron 2 of 12)	intron (NM_001281483, intron 2 of 12)	2987	NM_175609	55738		NM_018209	ENSG00000101199	ARFGAP1	ARF1GAP|HRIHFB2281	ADP ribosylation factor GTPase activating protein 1	protein-coding
57378	chr12	121802601	121803600	+	0	NA	promoter-TSS (NR_152735)	promoter-TSS (NR_152735)	-154	NR_152737	338799		NM_178538	ENSG00000212694	LINC01089	LIMT	long intergenic non-protein coding RNA 1089	ncRNA
215383	chr7	157432521	157433380	+	0	NA	Intergenic	Intergenic	-33281	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
26271	chr10	14812351	14812880	+	0	NA	Intergenic	MER51A|LTR|ERV1	25422	NM_001029954	441549		NM_001029954	ENSG00000185267	CDNF	ARMETL1	cerebral dopamine neurotrophic factor	protein-coding
231197	chr9	129934171	129934600	+	0	NA	intron (NM_001363755, intron 6 of 15)	intron (NM_001363755, intron 6 of 15)	64780	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
101199	chr17	65495221	65495700	+	0	NA	Intergenic	Intergenic	37919	NR_131984	105827617		NR_131984	ENSG00000263520	LINC02563	CRAT40	long intergenic non-protein coding RNA 2563	ncRNA
116954	chr19	18856451	18857100	+	0	NA	intron (NM_001297549, intron 13 of 23)	intron (NM_001297549, intron 13 of 23)	24816	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
130138	chr2	74837551	74838430	+	0	NA	intron (NM_001371525, intron 1 of 17)	intron (NM_001371525, intron 1 of 17)	2820	NM_001371525	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
218308	chr8	42544071	42544230	+	0	NA	intron (NM_001363186, intron 1 of 3)	AluY|SINE|Alu	-2196	NM_006749	6575		NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC2|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
126901	chr2	32376051	32376350	+	0	NA	intron (NM_016252, intron 1 of 73)	AluYf1|SINE|Alu	18984	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
71780	chr15	21352651	21353280	+	0	NA	Intergenic	CpG	21003	NR_024387	646243		NR_024387		CXADRP2	-	CXADR pseudogene 2	pseudo
147609	chr20	62119971	62120500	+	0	NA	Intergenic	Intergenic	-2240	NM_144703	149986		NM_014054	ENSG00000149657	LSM14B	C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3	LSM family member 14B	protein-coding
51110	chr12	50059771	50060430	+	0	NA	intron (NM_001095, intron 3 of 11)	intron (NM_001095, intron 3 of 11)	2504	NR_046389	41		NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding
160743	chr3	32493901	32494300	+	0	NA	intron (NM_017801, intron 1 of 3)	intron (NM_017801, intron 1 of 3)	8752	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
31943	chr10	100653501	100654250	+	0	NA	Intergenic	Intergenic	-81521	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
170229	chr3	184183351	184183850	+	0	NA	exon (NM_001311198, exon 13 of 13)	exon (NM_001311198, exon 13 of 13)	-2475	NM_018358	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
182366	chr5	60597671	60597850	+	0	NA	exon (NM_018369, exon 11 of 11)	exon (NM_018369, exon 11 of 11)	-101474	NM_001364599	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
95185	chr17	35189521	35189930	+	0	NA	TTS (NM_001308281)	TTS (NM_001308281)	4668	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
193023	chr6	28355601	28356600	+	0	NA	5' UTR (NM_001135215, exon 1 of 8)	5' UTR (NM_001135215, exon 1 of 8)	171	NM_001135215	64288		NM_030899	ENSG00000235109	ZSCAN31	ZNF20-Lp|ZNF310P|ZNF323	zinc finger and SCAN domain containing 31	protein-coding
100044	chr17	58073801	58074200	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	9204	NR_110809	101927666		NR_110809	ENSG00000266290	DYNLL2-DT	-	DYNLL2 divergent transcript	ncRNA
32873	chr10	110087821	110088080	+	0	NA	intron (NM_016824, intron 1 of 14)	MLT1C|LTR|ERVL-MaLR	64030	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
50932	chr12	49346451	49347190	+	0	NA	promoter-TSS (NM_001304944)	promoter-TSS (NM_001304944)	-68	NM_024902	79962		NM_024902	ENSG00000178401	DNAJC22	wus	DnaJ heat shock protein family (Hsp40) member C22	protein-coding
171927	chr4	868071	868230	+	0	NA	intron (NM_001318134, intron 17 of 24)	intron (NM_001318134, intron 17 of 24)	-42021	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
199713	chr6	125307951	125308250	+	0	NA	Intergenic	Intergenic	-6133	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
196510	chr6	43673351	43673650	+	0	NA	TTS (NM_152732)	TTS (NM_152732)	14291	NM_018135	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
60556	chr13	41486821	41487480	+	0	NA	Intergenic	L1M1|LINE|L1	29600	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
221794	chr8	127970651	127971830	+	0	NA	intron (NR_003367, intron 3 of 8)	MIRb|SINE|MIR	10607	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
129016	chr2	64867171	64867500	+	0	NA	Intergenic	Intergenic	-3704	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
85132	chr16	34594951	34595730	+	0	NA	Intergenic	Intergenic	-213860	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
178342	chr4	145843521	145843980	+	0	NA	intron (NM_178835, intron 7 of 14)	LTR16A1|LTR|ERVL	95073	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
137125	chr2	191020051	191021350	+	0	NA	promoter-TSS (NR_136318)	promoter-TSS (NR_136318)	-826	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
123726	chr19	55055371	55055730	+	0	NA	intron (NM_001145971, intron 3 of 6).10	intron (NM_001145971, intron 3 of 6).10	7598	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
79692	chr16	1288321	1288580	+	0	NA	Intergenic	Intergenic	-20702	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
13208	chr1	112639621	112640200	+	0	NA	intron (NM_006135, intron 1 of 9)	SVA_D|Retroposon|SVA	20078	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
183503	chr5	79508601	79508800	+	0	NA	intron (NM_001277077, intron 1 of 5)	L2c|LINE|L2	5136	NM_001277077	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
91012	chr17	2793951	2794650	+	0	NA	intron (NM_001330058, intron 1 of 24)	intron (NM_001330058, intron 1 of 24)	-2138	NM_001100398	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
88525	chr16	85372801	85373000	+	0	NA	Intergenic	MIRb|SINE|MIR	-66575	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
221693	chr8	126809871	126810130	+	0	NA	Intergenic	Intergenic	-203154	NR_045262	100750225		NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1|PiHL	prostate cancer associated transcript 1	ncRNA
149044	chr21	15050971	15051330	+	0	NA	intron (NM_003489, intron 1 of 3)	MER74B|LTR|ERVL	13850	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
134823	chr2	148546151	148546450	+	0	NA	Intergenic	Intergenic	-98451	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
196767	chr6	45461401	45461730	+	0	NA	intron (NM_001278478, intron 3 of 5)	intron (NM_001278478, intron 3 of 5)	39290	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
54032	chr12	75640921	75641430	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-129566	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
199614	chr6	119336171	119336530	+	0	NA	intron (NM_005907, intron 2 of 12)	AluSz6|SINE|Alu	13411	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
170172	chr3	183638721	183639180	+	0	NA	intron (NM_001349422, intron 2 of 7)	AluSq2|SINE|Alu	3327	NR_146170	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
133976	chr2	130732601	130733180	+	0	NA	Intergenic	L1ME3E|LINE|L1	3820	NM_207364	344561		NM_207364	ENSG00000173302	GPR148	BTR|PGR6	G protein-coupled receptor 148	protein-coding
67187	chr14	68841301	68842100	+	0	NA	Intergenic	L1ME2z|LINE|L1	-45457	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
166587	chr3	118942401	118942800	+	0	NA	promoter-TSS (NR_046230)	promoter-TSS (NR_046230)	-476	NR_046230	100506765		NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
197483	chr6	75600521	75600830	+	0	NA	promoter-TSS (NM_001304792)	promoter-TSS (NM_001304792)	-834	NM_001304792	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
10451	chr1	66281971	66282850	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-49698	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
4082	chr1	19087621	19088080	+	0	NA	exon (NM_020765, exon 99 of 106)	exon (NM_020765, exon 99 of 106)	122416	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
220596	chr8	100906201	100906680	+	0	NA	Intergenic	L1ME4b|LINE|L1	44131	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
114871	chr19	13872501	13873830	+	0	NA	intron (NR_146097, intron 1 of 1)	CpG	-1534	NR_029613	406957		NR_029613	ENSG00000207613	MIR181C	MIRN181C|mir-181c	microRNA 181c	ncRNA
206916	chr7	38209301	38209680	+	0	NA	intron (NM_032016, intron 2 of 8)	AluSx3|SINE|Alu	31245	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
222410	chr8	134343301	134343500	+	0	NA	Intergenic	Intergenic	-254671	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
161642	chr3	43307721	43308500	+	0	NA	intron (NM_017719, intron 3 of 6)	Tigger1|DNA|TcMar-Tigger	21570	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
72180	chr15	29208371	29208530	+	0	NA	intron (NM_015307, intron 3 of 10)	intron (NM_015307, intron 3 of 10)	61372	NM_138704	56160		NM_138704	ENSG00000185115	NSMCE3	HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3	NSE3 homolog, SMC5-SMC6 complex component	protein-coding
52710	chr12	56586171	56586330	+	0	NA	intron (NM_002898, intron 9 of 13)	AluY|SINE|Alu	44076	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
130249	chr2	84848601	84848800	+	0	NA	intron (NM_001307978, intron 2 of 4)	AluSz6|SINE|Alu	32384	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
97279	chr17	43029421	43029930	+	0	NA	3' UTR (NM_005440, exon 5 of 5)	3' UTR (NM_005440, exon 5 of 5)	4444	NM_005440	8153		NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
61304	chr13	50255301	50255950	+	0	NA	intron (NR_109974, intron 2 of 6)	L1ME4a|LINE|L1	83607	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
202025	chr6	152975151	152976150	+	0	NA	intron (NM_001142522, intron 1 of 4)	intron (NM_001142522, intron 1 of 4)	7391	NM_012177	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
200247	chr6	132300521	132300730	+	0	NA	intron (NM_015529, intron 10 of 11)	intron (NM_015529, intron 10 of 11)	100850	NM_015529	26002		NM_015529	ENSG00000079931	MOXD1	MOX|PRO5780|dJ248E1.1	monooxygenase DBH like 1	protein-coding
33927	chr10	124607221	124607480	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-96678	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
24409	chr1	243254261	243255400	+	0	NA	intron (NM_001042405, intron 1 of 18).2	CpG	451	NM_014812	9859		NM_014812	ENSG00000143702	CEP170	FAM68A|KAB|KIAA0470	centrosomal protein 170	protein-coding
235356	chrX	44344201	44345030	+	0	NA	promoter-TSS (NM_025184)	promoter-TSS (NM_025184)	-943	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
20718	chr1	200869871	200871130	+	0	NA	Intergenic	Intergenic	-2481	NM_005298	2848		NM_005298	ENSG00000170128	GPR25	-	G protein-coupled receptor 25	protein-coding
21016	chr1	202902871	202903430	+	0	NA	intron (NM_021633, intron 6 of 11)	AluJb|SINE|Alu	-14001	NM_002871	5877		NM_002871	ENSG00000183155	RABIF	MSS4|RASGFR3|RASGRF3	RAB interacting factor	protein-coding
77176	chr15	80099571	80099730	+	0	NA	intron (NM_001242919, intron 1 of 5)	AluSz|SINE|Alu	1234	NM_001242919	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
37909	chr11	34088101	34088300	+	0	NA	intron (NM_203364, intron 11 of 17)	AluSc|SINE|Alu	-17429	NM_001144030	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
7329	chr1	32698771	32699130	+	0	NA	intron (NM_030786, intron 1 of 4)	AluJo|SINE|Alu	3820	NM_030786	81493		NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
200323	chr6	133888921	133889280	+	0	NA	promoter-TSS (NM_003206)	promoter-TSS (NM_003206)	-13	NM_003206	6943		NM_003206	ENSG00000118526	TCF21	POD1|bHLHa23	transcription factor 21	protein-coding
28345	chr10	46773721	46774180	+	0	NA	intron (NR_111968, intron 2 of 5)	intron (NR_111968, intron 2 of 5)	-12783	NR_003611	399761		NM_001040053	ENSG00000291069	BMS1P1	BMS1LP1|BMS1LP5|BMS1P5	BMS1 pseudogene 1	pseudo
141933	chr20	1224221	1224770	+	0	NA	Intergenic	L2a|LINE|L2	-1549	NM_001384357	642636		NM_001136566	ENSG00000244588	RAD21L1	RAD21L|dJ545L17.2	RAD21 cohesin complex component like 1	protein-coding
8201	chr1	39580371	39580530	+	0	NA	Intergenic	AluY|SINE|Alu	-3660	NM_003819	8761		NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
68488	chr14	88012771	88013130	+	0	NA	3' UTR (NM_003608, exon 2 of 2)	3' UTR (NM_003608, exon 2 of 2)	7815	NM_003608	8477		NM_003608	ENSG00000140030	GPR65	TDAG8|hTDAG8	G protein-coupled receptor 65	protein-coding
107621	chr18	48934701	48936000	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	7457	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
122434	chr19	49473851	49474800	+	0	NA	promoter-TSS (NM_001204503)	promoter-TSS (NM_001204503)	110	NM_001278638	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
153604	chr22	27853501	27853780	+	0	NA	exon (NM_001284277, exon 11 of 11)	exon (NM_001284277, exon 11 of 11)	-51884	NM_002430	4330		NM_002430	ENSG00000169184	MN1	CEBALID|MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	MN1 proto-oncogene, transcriptional regulator	protein-coding
179080	chr4	168153671	168154130	+	0	NA	intron (NM_007193, intron 3 of 11)	intron (NM_007193, intron 3 of 11)	61363	NM_007193	11199		NM_007193	ENSG00000109511	ANXA10	ANX14	annexin A10	protein-coding
152362	chr22	20491651	20492530	+	0	NA	intron (NR_033825, intron 1 of 5)	intron (NR_033825, intron 1 of 5)	3705	NM_032775	84861		NM_032775	ENSG00000099910	KLHL22	KELCHL	kelch like family member 22	protein-coding
220568	chr8	100768701	100768900	+	0	NA	Intergenic	L1MA5A|LINE|L1	-46712	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
11430	chr1	89756771	89756930	+	0	NA	Intergenic	Intergenic	-64182	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
40701	chr11	64783801	64784600	+	0	NA	TTS (NM_001307990)	TTS (NM_001307990)	-5658	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
199136	chr6	111716501	111717130	+	0	NA	intron (NM_001370529, intron 2 of 11)	AluSx3|SINE|Alu	42316	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
33715	chr10	121824001	121824200	+	0	NA	intron (NR_110006, intron 8 of 9)	intron (NR_110006, intron 8 of 9)	103931	NM_007041	11101		NM_007041	ENSG00000107669	ATE1	-	arginyltransferase 1	protein-coding
200029	chr6	129683751	129684580	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	26012	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
166806	chr3	122582251	122582550	+	0	NA	intron (NM_001113523, intron 1 of 11)	AluJr|SINE|Alu	4750	NM_001308320	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
5743	chr1	26471601	26472500	+	0	NA	promoter-TSS (NM_005517)	promoter-TSS (NM_005517)	-390	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
132245	chr2	102425771	102426230	+	0	NA	intron (NM_003853, intron 5 of 11)	intron (NM_003853, intron 5 of 11)	-6289	NR_039930	100616157		NR_039930	ENSG00000264764	MIR4772	mir-4772	microRNA 4772	ncRNA
130027	chr2	74330871	74331230	+	0	NA	intron (NM_133478, intron 4 of 30)	intron (NM_133478, intron 4 of 30)	12366	NM_133478	57835		NM_021196	ENSG00000188687	SLC4A5	NBC4|NBCe2	solute carrier family 4 member 5	protein-coding
219473	chr8	73467451	73467550	+	0	NA	intron (NM_001164380, intron 13 of 14)	AluY|SINE|Alu	47426	NR_038406	100128126		NR_038406	ENSG00000253302	STAU2-AS1	-	STAU2 antisense RNA 1	ncRNA
231179	chr9	129904071	129904830	+	0	NA	intron (NM_001363755, intron 12 of 15)	intron (NM_001363755, intron 12 of 15)	34845	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
101177	chr17	65173151	65174550	+	0	NA	intron (NM_001165933, intron 8 of 16)	(ATGA)n|Simple_repeat|Simple_repeat	36480	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
153954	chr22	30352401	30353300	+	0	NA	intron (NM_005877, intron 2 of 15)	intron (NM_005877, intron 2 of 15)	-3774	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
218645	chr8	57037371	57037730	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-43683	NM_017813	54928		NM_017813	ENSG00000104331	BPNT2	GPAPP|IMP 3|IMP-3|IMPA3|IMPAD1	3'(2'), 5'-bisphosphate nucleotidase 2	protein-coding
211448	chr7	105079301	105079500	+	0	NA	intron (NM_182931, intron 12 of 26)	AluSq2|SINE|Alu	65195	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
170404	chr3	185363051	185363700	+	0	NA	intron (NM_004721, intron 1 of 13)	intron (NM_004721, intron 1 of 13)	239	NM_004721	9175		NM_004721	ENSG00000073803	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
33674	chr10	119874371	119874530	+	0	NA	promoter-TSS (NM_001256379)	promoter-TSS (NM_001256379)	-822	NM_001256379	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
149922	chr21	36175851	36176400	+	0	NA	intron (NM_001320714, intron 2 of 36)	intron (NM_001320714, intron 2 of 36)	11584	NM_005128	9980		NM_005128	ENSG00000142197	DOP1B	21orf5|C21orf5|DOPEY2	DOP1 leucine zipper like protein B	protein-coding
165061	chr3	71452101	71452650	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	89714	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
89081	chr16	88468351	88469000	+	0	NA	promoter-TSS (NR_049821)	promoter-TSS (NR_049821)	-243	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
148232	chr20	63626171	63627900	+	0	NA	promoter-TSS (NM_012384)	promoter-TSS (NM_012384)	66	NM_012384	26205		NM_012384	ENSG00000101216	GMEB2	GMEB-2|P79PIF|PIF79	glucocorticoid modulatory element binding protein 2	protein-coding
239421	chrY	56681271	56681430	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-272905	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
230224	chr9	127867171	127867330	+	0	NA	3' UTR (NM_000476, exon 7 of 7)	3' UTR (NM_000476, exon 7 of 7)	2245	NR_039819	100616429		NR_039819	ENSG00000263979	MIR4672	-	microRNA 4672	ncRNA
127208	chr2	38586971	38587130	+	0	NA	intron (NM_138394, intron 2 of 12)	intron (NM_138394, intron 2 of 12)	15878	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
110846	chr19	2554201	2554500	+	0	NA	intron (NM_052847, intron 3 of 4)	AluJo|SINE|Alu	-76365	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
179201	chr4	173369001	173370200	+	0	NA	Intergenic	AluSx|SINE|Alu	-1354	NM_003864	8819		NM_003864	ENSG00000164105	SAP30	-	Sin3A associated protein 30	protein-coding
62655	chr13	102396821	102397080	+	0	NA	intron (NM_001321942, intron 1 of 5)	intron (NM_001321942, intron 1 of 5)	2372	NR_036487	283481		NR_036487	ENSG00000272143	FGF14-AS2	-	FGF14 antisense RNA 2	ncRNA
225535	chr9	35790251	35790800	+	0	NA	Intergenic	Intergenic	-1066	NM_001378923	4882		NM_000907	ENSG00000159899	NPR2	AMD1|AMDM|ANPRB|ANPb|ECDM|GC-B|GCB|GUC2B|GUCY2B|NPRB|NPRBi|SNSK	natriuretic peptide receptor 2	protein-coding
83599	chr16	28181971	28182650	+	0	NA	intron (NM_015171, intron 1 of 23)	Charlie15b|DNA|hAT-Charlie	29655	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
51047	chr12	49790821	49791080	+	0	NA	TTS (NM_001368048)	TTS (NM_001368048)	37463	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
153703	chr22	29273021	29273280	+	0	NA	intron (NM_001163286, intron 3 of 15)	intron (NM_001163286, intron 3 of 15)	4882	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
178193	chr4	142402951	142403550	+	0	NA	promoter-TSS (NM_001385461)	promoter-TSS (NM_001385461)	-117	NR_169624	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
193329	chr6	30184321	30184780	+	0	NA	TTS (NM_003449).3	TTS (NM_003449).3	21004	NM_033229	89870		NM_033229	ENSG00000204610	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
2553	chr1	9735021	9736500	+	0	NA	intron (NM_014944, intron 11 of 17)	intron (NM_014944, intron 11 of 17)	44293	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
94844	chr17	31492221	31492630	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	4317	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
100922	chr17	64468001	64468400	+	0	NA	intron (NM_001369493, intron 9 of 9)	MLT1D|LTR|ERVL-MaLR	19085	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
99440	chr17	50127151	50127250	+	0	NA	intron (NM_174920, intron 1 of 10)	intron (NM_174920, intron 1 of 10)	2960	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
213469	chr7	138986471	138986630	+	0	NA	Intergenic	AluSc|SINE|Alu	-5161	NM_020910	57670		NM_020910	ENSG00000122778	KIAA1549	RP86	KIAA1549	protein-coding
47493	chr12	3976071	3976650	+	0	NA	Intergenic	Intergenic	-102912	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
46296	chr11	124874571	124875080	+	0	NA	exon (NM_022370, exon 13 of 28)	exon (NM_022370, exon 13 of 28)	-1357	NR_163409	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
147812	chr20	62668551	62669000	+	0	NA	intron (NM_016354, intron 10 of 11)	intron (NM_016354, intron 10 of 11)	-2154	NR_024470	100127888		NR_024470	ENSG00000232803	SLCO4A1-AS1	-	SLCO4A1 antisense RNA 1	ncRNA
115778	chr19	16356821	16357280	+	0	NA	intron (NR_047665, intron 22 of 22)	intron (NR_047665, intron 22 of 22)	32224	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
37136	chr11	13376251	13376750	+	0	NA	intron (NR_147787, intron 14 of 19)	intron (NR_147787, intron 14 of 19)	63779	NM_001297742	84280		NM_032320	ENSG00000148925	BTBD10	GMRP-1|GMRP1	BTB domain containing 10	protein-coding
62214	chr13	98478971	98479280	+	0	NA	intron (NM_001286649, intron 2 of 9)	intron (NM_001286649, intron 2 of 9)	43000	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
170096	chr3	183097651	183097950	+	0	NA	intron (NR_120639, intron 1 of 15)	intron (NR_120639, intron 1 of 15)	1443	NR_120640	56922		NM_020166	ENSG00000078070	MCCC1	MCC-B|MCCA|MCCCalpha	methylcrotonyl-CoA carboxylase subunit 1	protein-coding
24521	chr1	244829771	244830330	+	0	NA	Intergenic	AluSz|SINE|Alu	-5256	NM_001312871	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
221288	chr8	122918501	122919630	+	0	NA	intron (NM_001362797, intron 3 of 4)	intron (NM_001362797, intron 3 of 4)	106707	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
86943	chr16	68110901	68111850	+	0	NA	intron (NM_173165, intron 1 of 9)	L1PA10|LINE|L1	26005	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
144427	chr20	35434771	35435130	+	0	NA	TTS (NR_161326)	TTS (NR_161326)	1921	NR_161326	554250		NM_001350519		GDF5-AS1	GDF5OS	GDF5 antisense RNA 1	ncRNA
57161	chr12	121334451	121335380	+	0	NA	intron (NM_016237, intron 7 of 16)	intron (NM_016237, intron 7 of 16)	17496	NM_001330489	51433		NM_016237	ENSG00000089053	ANAPC5	APC5	anaphase promoting complex subunit 5	protein-coding
225652	chr9	36397021	36397630	+	0	NA	intron (NM_194330, intron 1 of 11)	AluSq|SINE|Alu	2944	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
130276	chr2	84874701	84875430	+	0	NA	intron (NM_001307978, intron 1 of 4)	intron (NM_001307978, intron 1 of 4)	6019	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
92469	chr17	8717371	8717530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	27386	NM_144681	146849		NM_144681	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
43478	chr11	78201501	78201900	+	0	NA	intron (NM_020798, intron 6 of 10)	MIRb|SINE|MIR	12781	NM_020798	57558		NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
228218	chr9	97859401	97860630	+	0	NA	Intergenic	Intergenic	6789	NM_004473	2304		NM_004473	ENSG00000178919	FOXE1	BAMLAZ|FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2	forkhead box E1	protein-coding
176114	chr4	83074001	83074830	+	0	NA	intron (NM_001330727, intron 10 of 10)	intron (NM_001330727, intron 10 of 10)	35474	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
203947	chr7	1549721	1550480	+	0	NA	intron (NM_001097620, intron 5 of 8)	intron (NM_001097620, intron 5 of 8)	6105	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
133949	chr2	130571171	130571730	+	0	NA	intron (NR_027314, intron 1 of 1)	intron (NR_027314, intron 1 of 1)	601	NR_027314	150527		NR_027313	ENSG00000290614	PRSS40A	TISP43	serine protease 40A (pseudogene)	pseudo
57868	chr12	123379201	123379880	+	0	NA	Intergenic	LTR50|LTR|ERVL	-4592	NM_001324505	387893		NM_020382	ENSG00000183955	KMT5A	PR-Set7|PR/SET07|SET07|SET8|SETD8	lysine methyltransferase 5A	protein-coding
225902	chr9	39810921	39811200	+	0	NA	promoter-TSS (NR_126046)	promoter-TSS (NR_126046)	-901	NR_126044	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
49798	chr12	31961221	31961580	+	0	NA	intron (NM_018169, intron 2 of 5)	MIR|SINE|MIR	1985	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
181256	chr5	39215321	39216050	+	0	NA	intron (NM_001349333, intron 1 of 19)	intron (NM_001349333, intron 1 of 19)	3878	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
81376	chr16	5024701	5025000	+	0	NA	TTS (NM_016256)	TTS (NM_016256)	-8852	NR_038913	100507589		NR_038913		NAGPA-AS1	-	NAGPA antisense RNA 1	ncRNA
84341	chr16	30198371	30198530	+	0	NA	promoter-TSS (NM_001017390)	promoter-TSS (NM_001017390)	-805	NM_177552	6818		NM_003166	ENSG00000261052	SULT1A3	HAST|HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|ST1A5|STM|TL-PST	sulfotransferase family 1A member 3	protein-coding
36866	chr11	10453471	10454100	+	0	NA	intron (NM_000480, intron 1 of 14)	AluSc|SINE|Alu	-1479	NM_001025389	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
204021	chr7	1917771	1917930	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	22721	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
114520	chr19	12804201	12804400	+	0	NA	Intergenic	CpG	-2284	NM_006397	10535		NM_006397	ENSG00000104889	RNASEH2A	AGS4|JUNB|RNASEHI|RNHIA|RNHL	ribonuclease H2 subunit A	protein-coding
155326	chr22	38215771	38216130	+	0	NA	3' UTR (NM_012323, exon 3 of 3)	3' UTR (NM_012323, exon 3 of 3)	8770	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
32001	chr10	100972301	100972500	+	0	NA	promoter-TSS (NM_017893)	promoter-TSS (NM_017893)	-129	NM_001203244	57715		NM_017893	ENSG00000095539	SEMA4G	-	semaphorin 4G	protein-coding
56831	chr12	120230351	120230630	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	19673	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
88899	chr16	87767821	87768300	+	0	NA	intron (NR_120309, intron 3 of 3)	AluSx|SINE|Alu	-2074	NM_001184856	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
233199	chr9	137214951	137215250	+	0	NA	exon (NM_001144027, exon 8 of 13)	exon (NM_001144027, exon 8 of 13)	6223	NM_031297	727800		NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
103197	chr17	77464321	77464730	+	0	NA	intron (NM_001293698, intron 1 of 9)	MLT2B4|LTR|ERVL	10498	NM_001293698	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
71491	chr14	105993751	105994250	+	0	NA	Intergenic	L1PA13|LINE|L1	-21731	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
75499	chr15	66392051	66392800	+	0	NA	intron (NM_002755, intron 1 of 10)	AluJb|SINE|Alu	5513	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
22793	chr1	224436971	224437330	+	0	NA	intron (NM_001322303, intron 1 of 5)	intron (NM_001322303, intron 1 of 5)	2301	NR_136293	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
71805	chr15	21752151	21752950	+	0	NA	Intergenic	Intergenic	-16551	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
227838	chr9	93465701	93466250	+	0	NA	intron (NM_001286723, intron 1 of 9)	L1MC4a|LINE|L1	-12374	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
13186	chr1	112508301	112509850	+	0	NA	5' UTR (NM_024494, exon 1 of 5)	5' UTR (NM_024494, exon 1 of 5)	110	NM_024494	7482		NM_004185	ENSG00000134245	WNT2B	WNT13	Wnt family member 2B	protein-coding
125009	chr2	9550151	9550450	+	0	NA	intron (NM_001382778, intron 1 of 18)	intron (NM_001382778, intron 1 of 18)	5530	NM_003183	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
8987	chr1	44649851	44650150	+	0	NA	intron (NM_001319957, intron 13 of 13)	intron (NM_001319957, intron 13 of 13)	18032	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
131968	chr2	100103501	100104150	+	0	NA	intron (NM_001025108, intron 2 of 23)	intron (NM_001025108, intron 2 of 23)	1758	NM_001025108	3899		NM_002285	ENSG00000144218	AFF3	KINS|LAF4|MLLT2-like	ALF transcription elongation factor 3	protein-coding
112875	chr19	7612501	7613700	+	0	NA	exon (NM_001080429, exon 13 of 19)	exon (NM_001080429, exon 13 of 19)	-4339	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
233042	chr9	137047721	137048180	+	0	NA	TTS (NM_001246)	TTS (NM_001246)	-1773	NM_015392	56654		NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
56138	chr12	111093171	111093730	+	0	NA	intron (NM_015267, intron 1 of 21)	intron (NM_015267, intron 1 of 21)	-6554	NM_001370598	23316		NM_015267	ENSG00000111249	CUX2	CDP2|CUTL2|DEE67|EIEE67	cut like homeobox 2	protein-coding
112340	chr19	5920871	5921300	+	0	NA	intron (NM_003624, intron 14 of 16)	intron (NM_003624, intron 14 of 16)	6831	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
72833	chr15	40131101	40132280	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-22811	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
73353	chr15	42206971	42207130	+	0	NA	intron (NM_001301138, intron 1 of 25)	intron (NM_001301138, intron 1 of 25)	1254	NM_001301138	23339		NM_015289	ENSG00000166887	VPS39	TLP|VAM6|hVam6p	VPS39 subunit of HOPS complex	protein-coding
46485	chr11	128324051	128325880	+	0	NA	Intergenic	Intergenic	116199	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
168599	chr3	149174921	149175180	+	0	NA	intron (NM_000096, intron 18 of 18)	intron (NM_000096, intron 18 of 18)	45412	NM_032383	84343		NM_032383	ENSG00000163755	HPS3	BLOC2S1|SUTAL	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding
62722	chr13	104983671	104983830	+	0	NA	Intergenic	Intergenic	-482117	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
114377	chr19	12543301	12543500	+	0	NA	intron (NM_144976, intron 1 of 3)	AluSx3|SINE|Alu	8082	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
134241	chr2	135004251	135004930	+	0	NA	intron (NM_001018046, intron 3 of 8)	intron (NM_001018046, intron 3 of 8)	19059	NM_001321177	80122		NM_025052	ENSG00000176601	MAP3K19	RCK|YSK4	mitogen-activated protein kinase kinase kinase 19	protein-coding
208740	chr7	73456871	73457330	+	0	NA	intron (NM_001370402, intron 13 of 18)	L1MB3|LINE|L1	23322	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
45510	chr11	118693551	118694530	+	0	NA	Intergenic	MamTip3|DNA|hAT-Tip100	-14390	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
233924	chrX	1764801	1765200	+	0	NA	Intergenic	Intergenic	149867	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
121318	chr19	46756501	46756750	+	0	NA	exon (NM_024301, exon 4 of 4)	exon (NM_024301, exon 4 of 4)	-10175	NM_013403	29888		NM_013403	ENSG00000090372	STRN4	PPP2R6C|ZIN|zinedin	striatin 4	protein-coding
162463	chr3	48502551	48502980	+	0	NA	intron (NM_001272066, intron 1 of 5)	intron (NM_001272066, intron 1 of 5)	1285	NM_001272068	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
14538	chr1	144867321	144867600	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	149289	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
78944	chr15	101279121	101279600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1875	NM_203472	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
175035	chr4	52721721	52722780	+	0	NA	Intergenic	CpG	9001	NR_003016	677810		NR_003016	ENSG00000212588	SNORA26	HBI-6	small nucleolar RNA, H/ACA box 26	snoRNA
159451	chr3	13891671	13892130	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-11829	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
174433	chr4	39632471	39632950	+	0	NA	intron (NM_001317896, intron 1 of 5)	AluJb|SINE|Alu	-5589	NM_001317897	201895		NM_174921	ENSG00000163683	SMIM14	C4orf34	small integral membrane protein 14	protein-coding
226684	chr9	75092901	75093330	+	0	NA	intron (NM_012383, intron 1 of 9)	FLAM_A|SINE|Alu	4601	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
14769	chr1	146037601	146038790	+	0	NA	Intergenic	Intergenic	14049	NR_104085	101954276		NR_104085	ENSG00000201558	RNVU1-6	RNU1-99|vU1.6	RNA, variant U1 small nuclear 6	snRNA
149450	chr21	31654371	31656100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4458	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
187362	chr5	141754101	141754480	+	0	NA	Intergenic	Intergenic	-72060	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
67389	chr14	69784721	69785850	+	0	NA	intron (NM_003049, intron 2 of 4)	intron (NM_003049, intron 2 of 4)	11956	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
131996	chr2	100564721	100564980	+	0	NA	intron (NM_024065, intron 1 of 5)	intron (NM_024065, intron 1 of 5)	1857	NM_024065	79031		NM_024065	ENSG00000115539	PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin like 3	protein-coding
47075	chr12	571321	571780	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	14936	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
64263	chr14	23285121	23286680	+	0	NA	intron (NM_020834, intron 1 of 1)	intron (NM_020834, intron 1 of 1)	232	NM_020834	57594		NM_020834	ENSG00000290292	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
74067	chr15	52567251	52567350	+	0	NA	intron (NM_001306191, intron 3 of 5)	intron (NM_001306191, intron 3 of 5)	1532	NM_001330309	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
125303	chr2	10653871	10654550	+	0	NA	intron (NM_024894, intron 12 of 20)	intron (NM_024894, intron 12 of 20)	35765	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
110879	chr19	2633601	2634000	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	3085	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
223673	chr8	144396771	144397500	+	0	NA	intron (NM_013291, intron 23 of 37)	intron (NM_013291, intron 23 of 37)	-2905	NR_030635	100126351		NR_030635	ENSG00000284310	MIR939	MIRN939|hsa-mir-939|mir-939	microRNA 939	ncRNA
83825	chr16	28848151	28848600	+	0	NA	intron (NM_001308293, intron 1 of 10)	AluSz|SINE|Alu	1775	NM_001308293	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
10110	chr1	59044721	59045780	+	0	NA	intron (NR_110626, intron 2 of 2)	MSTA|LTR|ERVL-MaLR	24774	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
31984	chr10	100825171	100825650	+	0	NA	intron (NM_003988, intron 9 of 10)	intron (NM_003988, intron 9 of 10)	79828	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
97759	chr17	44483901	44484300	+	0	NA	intron (NM_001304940, intron 1 of 9)	AluSc8|SINE|Alu	19306	NM_001002909	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
103222	chr17	77487601	77488130	+	0	NA	intron (NM_001293697, intron 3 of 9)	intron (NM_001293697, intron 3 of 9)	12230	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
7945	chr1	37549751	37550300	+	0	NA	intron (NM_024700, intron 2 of 3)	L1MD1|LINE|L1	4268	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
216981	chr8	23072451	23073280	+	0	NA	intron (NR_038873, intron 1 of 2)	intron (NR_038873, intron 1 of 2)	-3834	NM_003842	8795		NM_003842	ENSG00000120889	TNFRSF10B	CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9	TNF receptor superfamily member 10b	protein-coding
128388	chr2	55045821	55046880	+	0	NA	intron (NM_001321904, intron 2 of 9)	L2a|LINE|L2	976	NM_001321863	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133588	chr2	121697201	121697430	+	0	NA	intron (NR_037857, intron 2 of 3)	intron (NR_037857, intron 2 of 3)	39560	NM_032390	84365		NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
2237	chr1	8867151	8867250	+	0	NA	promoter-TSS (NR_106786)	promoter-TSS (NR_106786)	-610	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
226783	chr9	76629371	76629730	+	0	NA	intron (NM_001308047, intron 16 of 17)	L1MA8|LINE|L1	62865	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
229580	chr9	123348701	123349100	+	0	NA	Intergenic	(CCTGAGA)n|Simple_repeat|Simple_repeat	-7297	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
170068	chr3	182909351	182910230	+	0	NA	intron (NM_014616, intron 28 of 29)	AluSx3|SINE|Alu	70748	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
73634	chr15	44668001	44668480	+	0	NA	intron (NM_001330283, intron 12 of 14)	intron (NM_001330283, intron 12 of 14)	-4578	NM_025137	80208		NM_025137	ENSG00000104133	SPG11	ALS5|CMT2X|KIAA1840	SPG11 vesicle trafficking associated, spatacsin	protein-coding
206662	chr7	36289321	36289580	+	0	NA	intron (NM_030636, intron 6 of 7)	L1MB3|LINE|L1	77790	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
231146	chr9	129865501	129865700	+	0	NA	intron (NM_001110303, intron 10 of 25)	MIRb|SINE|MIR	-4005	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
19155	chr1	171582751	171583050	+	0	NA	intron (NM_015172, intron 28 of 33)	Tigger3b|DNA|TcMar-Tigger	-36863	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
131640	chr2	97112151	97112700	+	0	NA	promoter-TSS (NM_198555)	promoter-TSS (NM_198555)	-728	NM_198555	375248		NM_198555	ENSG00000135976	ANKRD36	UNQ2430	ankyrin repeat domain 36	protein-coding
227467	chr9	91071321	91072280	+	0	NA	intron (NR_033912, intron 1 of 3)	intron (NR_033912, intron 1 of 3)	3332	NR_033912	100129316		NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
23049	chr1	226608071	226609000	+	0	NA	3' UTR (NM_001003665, exon 4 of 4)	3' UTR (NM_001003665, exon 4 of 4)	59771	NM_001003665	375057		NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
6564	chr1	28736521	28738130	+	0	NA	intron (NM_001172828, intron 1 of 3)	CpG	385	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
150254	chr21	41459701	41460030	+	0	NA	TTS (NM_002462)	TTS (NM_002462)	27815	NM_001282920	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
229669	chr9	124414951	124416750	+	0	NA	promoter-TSS (NM_002799)	promoter-TSS (NM_002799)	-408	NM_002799	5695		NM_002799	ENSG00000136930	PSMB7	-	proteasome 20S subunit beta 7	protein-coding
24670	chr1	247116901	247117500	+	0	NA	Intergenic	Intergenic	-4783	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
100450	chr17	61396751	61397100	+	0	NA	intron (NR_125750, intron 1 of 2)	CpG	2681	NR_125749	103689912		NR_125749	ENSG00000267280	TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
223774	chr8	144536651	144536750	+	0	NA	intron (NM_001308207, intron 7 of 11)	intron (NM_001308207, intron 7 of 11)	-7589	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
44143	chr11	96155821	96156330	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-185363	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
39013	chr11	47740371	47740530	+	0	NA	intron (NM_015308, intron 8 of 16)	intron (NM_015308, intron 8 of 16)	-25081	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
96551	chr17	40377721	40377980	+	0	NA	Intergenic	AluSz|SINE|Alu	-13113	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
70967	chr14	104696701	104696900	+	0	NA	intron (NM_032714, intron 1 of 4)	intron (NM_032714, intron 1 of 4)	7182	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
69427	chr14	94077201	94077700	+	0	NA	intron (NM_020414, intron 2 of 8).2	MIR|SINE|MIR	3752	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
176636	chr4	99851071	99851880	+	0	NA	intron (NM_014395, intron 3 of 8)	intron (NM_014395, intron 3 of 8)	34648	NM_014395	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
119557	chr19	40612021	40612450	+	0	NA	intron (NM_001042544, intron 18 of 32)	intron (NM_001042544, intron 18 of 32)	10866	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
153826	chr22	29837621	29839250	+	0	NA	promoter-TSS (NM_032204)	promoter-TSS (NM_032204)	-161	NM_001369943	84164		NM_032204	ENSG00000100325	ASCC2	ASC1p100|p100	activating signal cointegrator 1 complex subunit 2	protein-coding
99517	chr17	50279021	50279480	+	0	NA	exon (NM_153229, exon 5 of 5)	exon (NM_153229, exon 5 of 5)	4784	NM_153229	162461		NM_153229	ENSG00000167105	TMEM92	-	transmembrane protein 92	protein-coding
212955	chr7	130949571	130950430	+	0	NA	intron (NR_109853, intron 4 of 5)	MIR|SINE|MIR	36536	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
217310	chr8	27394751	27395580	+	0	NA	intron (NM_173174, intron 6 of 35)	Tigger3b|DNA|TcMar-Tigger	-38205	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
218884	chr8	60563171	60563530	+	0	NA	intron (NM_002865, intron 2 of 7)	MER5A1|DNA|hAT-Charlie	46363	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
220933	chr8	108440151	108440450	+	0	NA	Intergenic	Intergenic	-3283	NM_001329493	9694		NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
74393	chr15	58921501	58921700	+	0	NA	intron (NR_135043, intron 1 of 18)	intron (NR_135043, intron 1 of 18)	12079	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
98092	chr17	45591271	45591630	+	0	NA	Intergenic	AluSx|SINE|Alu	10412	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
30357	chr10	77846651	77847250	+	0	NA	intron (NM_004747, intron 5 of 31).2	intron (NM_004747, intron 5 of 31).2	79805	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
56112	chr12	110741221	110742000	+	0	NA	intron (NM_002710, intron 1 of 6)	intron (NM_002710, intron 1 of 6)	1281	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
154973	chr22	37283351	37283800	+	0	NA	intron (NM_013385, intron 1 of 12)	intron (NM_013385, intron 1 of 12)	1067	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
68685	chr14	90384001	90385280	+	0	NA	Intergenic	Intergenic	-11862	NM_001363669	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
76782	chr15	77009901	77010330	+	0	NA	intron (NM_001321136, intron 2 of 15)	intron (NM_001321136, intron 2 of 15)	14989	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
141568	chr2	241558821	241559630	+	0	NA	promoter-TSS (NR_033346)	promoter-TSS (NR_033346)	-82	NR_033346	100379249		NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	ncRNA
211814	chr7	108002321	108002700	+	0	NA	intron (NM_002291, intron 2 of 33)	CpG-26306	651	NM_002291	3912		NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding
81443	chr16	8870801	8871550	+	0	NA	Intergenic	L1MB7|LINE|L1	-2163	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
166624	chr3	119507971	119508580	+	0	NA	intron (NM_016589, intron 4 of 6)	L1MCa|LINE|L1	9728	NM_016589	51300		NM_016589	ENSG00000113845	TIMMDC1	C3orf1|MC1DN31	translocase of inner mitochondrial membrane domain containing 1	protein-coding
212605	chr7	129162401	129162600	+	0	NA	exon (NM_178562, exon 3 of 8)	exon (NM_178562, exon 3 of 8)	17793	NM_178562	340348		NM_178562	ENSG00000158457	TSPAN33	PEN|PEN.|TSPAN-33	tetraspanin 33	protein-coding
4293	chr1	19974801	19975150	+	0	NA	TTS (NM_001161727)	TTS (NM_001161727)	4684	NM_001161729	5320		NM_000300	ENSG00000188257	PLA2G2A	MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2	phospholipase A2 group IIA	protein-coding
155186	chr22	37800951	37801400	+	0	NA	Intergenic	L2a|LINE|L2	-4054	NM_005318	3005		NM_005318	ENSG00000189060	H1-0	H1.0|H10|H1F0|H1FV	H1.0 linker histone	protein-coding
146033	chr20	47318471	47318830	+	0	NA	non-coding (NR_024594, exon 1 of 1)	non-coding (NR_024594, exon 1 of 1)	148	NR_024594	100131496		NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
163067	chr3	49945701	49945900	+	0	NA	intron (NR_146071, intron 1 of 15)	AluY|SINE|Alu	5650	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
11852	chr1	92975721	92976380	+	0	NA	Intergenic	L2b|LINE|L2	-14528	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
35883	chr11	2397621	2398080	+	0	NA	TTS (NM_001297649)	TTS (NM_001297649)	-2900	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
138205	chr2	202679751	202680250	+	0	NA	intron (NM_173511, intron 1 of 7)	L1ME1|LINE|L1	45031	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
92175	chr17	7713521	7714530	+	0	NA	Intergenic	Intergenic	-3719	NM_020877	146754		NM_020877	ENSG00000183914	DNAH2	DNAHC2|DNHD3|SPGF45	dynein axonemal heavy chain 2	protein-coding
181466	chr5	42005571	42005830	+	0	NA	Intergenic	Intergenic	80419	NM_012176	26272		NM_012176	ENSG00000151876	FBXO4	FBX4	F-box protein 4	protein-coding
203112	chr6	166543551	166543850	+	0	NA	intron (NM_001006932, intron 2 of 21)	L2|LINE|L2	990	NM_001318938	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
28096	chr10	43386551	43387380	+	0	NA	exon (NM_004966, exon 4 of 4)	exon (NM_004966, exon 4 of 4)	9866	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
94240	chr17	28667301	28667700	+	0	NA	intron (NM_003170, intron 1 of 36)	(GT)n|Simple_repeat|Simple_repeat	5295	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
148672	chr21	6136151	6136450	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	25169	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
136172	chr2	174409851	174410250	+	0	NA	intron (NM_024583, intron 5 of 7)	L1PA2|LINE|L1	14320	NM_024583	79634		NM_024583	ENSG00000144306	SCRN3	SES3	secernin 3	protein-coding
62458	chr13	99358821	99359100	+	0	NA	intron (NR_026644, intron 7 of 8)	L2a|LINE|L2	2829	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
76991	chr15	78298951	78299980	+	0	NA	5' UTR (NM_001303247, exon 1 of 11)	5' UTR (NM_001303247, exon 1 of 11)	144	NM_025234	80349		NM_025234	ENSG00000140395	SKIC8	REC14|SKI8|WDR61	SKI8 subunit of superkiller complex	protein-coding
143549	chr20	31589071	31589230	+	0	NA	Intergenic	AluJo|SINE|Alu	-15887	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
8067	chr1	38988621	38989100	+	0	NA	Intergenic	L4_B_Mam|LINE|RTE-X	-2384	NM_001136275	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
212861	chr7	130855901	130856100	+	0	NA	Intergenic	Intergenic	20810	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
75170	chr15	64681401	64681800	+	0	NA	intron (NM_015042, intron 9 of 9)	intron (NM_015042, intron 9 of 9)	21681	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
229177	chr9	114589871	114590630	+	0	NA	intron (NM_004888, intron 1 of 2)	intron (NM_004888, intron 1 of 2)	2481	NM_004888	9550		NM_004888	ENSG00000136888	ATP6V1G1	ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10	ATPase H+ transporting V1 subunit G1	protein-coding
52822	chr12	57011301	57012050	+	0	NA	intron (NM_013251, intron 6 of 6)	MIR|SINE|MIR	4854	NM_001178054	6866		NM_013251	ENSG00000166863	TAC3	HH10|LncZBTB39|NK3|NKB|NKNB|PRO1155|ZNEUROK1	tachykinin precursor 3	protein-coding
210731	chr7	100625271	100625430	+	0	NA	intron (NM_003227, intron 17 of 17)	AluSp|SINE|Alu	8300	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
69070	chr14	92003401	92003600	+	0	NA	exon (NM_004239, exon 11 of 21)	exon (NM_004239, exon 11 of 21)	36559	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
52993	chr12	57503621	57504980	+	0	NA	intron (NM_004990, intron 11 of 20)	intron (NM_004990, intron 11 of 20)	-8388	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
166723	chr3	121645201	121645400	+	0	NA	intron (NM_005335, intron 4 of 13)	intron (NM_005335, intron 4 of 13)	15603	NM_005335	3059		NM_005335	ENSG00000180353	HCLS1	CTTNL|HS1|lckBP1|p75	hematopoietic cell-specific Lyn substrate 1	protein-coding
169520	chr3	170054271	170054500	+	0	NA	intron (NM_014373, intron 2 of 3)	intron (NM_014373, intron 2 of 3)	16390	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
21575	chr1	206472181	206473350	+	0	NA	intron (NM_001193321, intron 2 of 20)	intron (NM_001193321, intron 2 of 20)	-2038	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
35721	chr11	1953371	1953930	+	0	NA	intron (NM_021134, intron 4 of 4)	intron (NM_021134, intron 4 of 4)	4319	NR_132974	106635549		NR_132974		SNORD131	-	small nucleolar RNA, C/D box 131	snoRNA
31729	chr10	97706951	97707450	+	0	NA	Intergenic	Intergenic	-6530	NM_031484	83742		NM_031484	ENSG00000155254	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
176249	chr4	86939851	86940450	+	0	NA	intron (NM_001166693, intron 1 of 20)	FLAM_C|SINE|Alu	5148	NM_001166693	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
120332	chr19	43537571	43537730	+	0	NA	Intergenic	Intergenic	4462	NM_174945	284346		NM_174945	ENSG00000176472	ZNF575	-	zinc finger protein 575	protein-coding
197906	chr6	89368021	89368380	+	0	NA	exon (NM_021244, exon 7 of 7)	exon (NM_021244, exon 7 of 7)	-15478	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
109693	chr19	1048501	1048700	+	0	NA	intron (NM_019112, intron 16 of 46)	AluY|SINE|Alu	8493	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
79102	chr16	189951	190250	+	0	NA	exon (NM_001320226, exon 9 of 10)	exon (NM_001320226, exon 9 of 10)	9641	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
231305	chr9	130051621	130052380	+	0	NA	Intergenic	Intergenic	-1706	NM_001287346	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
36484	chr11	6261371	6261530	+	0	NA	intron (NM_001318029, intron 1 of 3)	(A)n|Simple_repeat|Simple_repeat	1612	NM_001363552	887		NM_176875	ENSG00000110148	CCKBR	CCK-2R|CCK-B|CCK2R|GASR	cholecystokinin B receptor	protein-coding
100260	chr17	59468551	59469000	+	0	NA	intron (NR_110813, intron 2 of 2)	intron (NR_110813, intron 2 of 2)	58082	NR_110813	101927728		NR_110813		LINC01476	-	long intergenic non-protein coding RNA 1476	ncRNA
140794	chr2	235951921	235952330	+	0	NA	intron (NM_001037131, intron 12 of 17)	intron (NM_001037131, intron 12 of 17)	216261	NM_001301687	2637		NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
150464	chr21	42527201	42528280	+	0	NA	intron (NM_018964, intron 4 of 20)	intron (NM_018964, intron 4 of 20)	13888	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
117280	chr19	19475521	19475780	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	39898	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
134706	chr2	144502201	144502600	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-17214	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
33963	chr10	124644401	124644600	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-59528	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
110052	chr19	1477221	1477500	+	0	NA	intron (NM_152482, intron 2 of 2)	L2a|LINE|L2	1855	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
65002	chr14	38138721	38138980	+	0	NA	Intergenic	Intergenic	-69054	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
179779	chr5	321221	321930	+	0	NA	promoter-TSS (NM_001377236)	promoter-TSS (NM_001377236)	-139	NM_001377236	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
197656	chr6	85404871	85405480	+	0	NA	promoter-TSS (NR_134633)	promoter-TSS (NR_134633)	-373	NR_134633	101928820		NR_134633	ENSG00000234155	LINC02535	-	long intergenic non-protein coding RNA 2535	ncRNA
37074	chr11	12673951	12675150	+	0	NA	5' UTR (NM_021961, exon 1 of 13)	5' UTR (NM_021961, exon 1 of 13)	129	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
173664	chr4	14665851	14665950	+	0	NA	intron (NR_126435, intron 3 of 6)	L1PA2|LINE|L1	222269	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
136404	chr2	176147501	176148300	+	0	NA	Intergenic	CpG	-2403	NR_029609	406903		NR_029609	ENSG00000207744	MIR10B	MIRN10B|hsa-mir-10b|miRNA10B|mir-10b	microRNA 10b	ncRNA
227257	chr9	89360751	89361480	+	0	NA	non-coding (NR_163888, exon 18 of 18)	non-coding (NR_163888, exon 18 of 18)	42264	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
66731	chr14	64493021	64493280	+	0	NA	intron (NM_001304508, intron 1 of 2)	intron (NM_001304508, intron 1 of 2)	4842	NM_001354687	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
78150	chr15	90408001	90409080	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	20298	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
237493	chrX	119887321	119888100	+	0	NA	Intergenic	Intergenic	-8183	NM_178813	158798		NM_178813	ENSG00000186471	AKAP14	AKAP28|PRKA14	A-kinase anchoring protein 14	protein-coding
172302	chr4	1580201	1581930	+	0	NA	Intergenic	Intergenic	102926	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
161228	chr3	39188701	39188900	+	0	NA	exon (NM_001198621, exon 2 of 3)	exon (NM_001198621, exon 2 of 3)	3795	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
41985	chr11	67379171	67379950	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-5383	NM_001166212	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
176027	chr4	82357751	82358050	+	0	NA	intron (NM_002138, intron 4 of 7)	MER102c|DNA|hAT-Charlie	16091	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
169377	chr3	160445171	160445330	+	0	NA	intron (NR_148403, intron 1 of 20)	AluJb|SINE|Alu	4536	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
3580	chr1	16210901	16211100	+	0	NA	intron (NM_153213, intron 1 of 15)	intron (NM_153213, intron 1 of 15)	1652	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
83846	chr16	28873151	28874080	+	0	NA	exon (NM_001308293, exon 11 of 11)	exon (NM_001308293, exon 11 of 11)	-4873	NM_004320	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
208086	chr7	56098721	56099530	+	0	NA	Intergenic	Intergenic	-6129	NR_047689	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
207500	chr7	44754151	44754500	+	0	NA	intron (NM_031449, intron 1 of 18)	intron (NM_031449, intron 1 of 18)	-1863	NM_174929	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
127054	chr2	37320001	37320400	+	0	NA	intron (NM_005813, intron 1 of 18)	MIRb|SINE|MIR	4633	NM_005813	23683		NM_005813	ENSG00000115825	PRKD3	EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU	protein kinase D3	protein-coding
14388	chr1	144181071	144181630	+	0	NA	Intergenic	AluJr|SINE|Alu	66855	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
164557	chr3	63980971	63981530	+	0	NA	intron (NM_001177387, intron 5 of 12)	intron (NM_001177387, intron 5 of 12)	13456	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
117001	chr19	18901351	18901700	+	0	NA	intron (NM_199444, intron 6 of 8)	intron (NM_199444, intron 6 of 8)	-4798	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
59054	chr13	20707671	20708230	+	0	NA	intron (NM_001385224, intron 1 of 1)	AluSz6|SINE|Alu	4251	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
67768	chr14	73729651	73730150	+	0	NA	exon (NM_194278, exon 4 of 12)	exon (NM_194278, exon 4 of 12)	-15516	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
140693	chr2	234281751	234282050	+	0	NA	Intergenic	AluSz|SINE|Alu	172695	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
143988	chr20	32966851	32967590	+	0	NA	Intergenic	Intergenic	37213	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
210959	chr7	101440301	101440600	+	0	NA	intron (NM_133457, intron 2 of 12)	intron (NM_133457, intron 2 of 12)	77575	NM_001278563	136227		NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen type XXVI alpha 1 chain	protein-coding
7477	chr1	33137821	33138100	+	0	NA	Intergenic	Intergenic	38590	NM_001330483	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
141596	chr2	241632551	241632850	+	0	NA	intron (NM_015963, intron 2 of 5)	intron (NM_015963, intron 2 of 5)	4458	NM_015963	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
149260	chr21	25999871	26000250	+	0	NA	exon (NM_000484, exon 7 of 18)	exon (NM_000484, exon 7 of 18)	140330	NM_001136016	351		NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|alpha-sAPP|preA4	amyloid beta precursor protein	protein-coding
109794	chr19	1150471	1150950	+	0	NA	intron (NM_014963, intron 2 of 31)	intron (NM_014963, intron 2 of 31)	-18489	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
117334	chr19	19525771	19526250	+	0	NA	intron (NM_015965, intron 1 of 4)	intron (NM_015965, intron 1 of 4)	-2901	NM_001190328	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
128128	chr2	48332371	48332530	+	0	NA	intron (NM_001375446, intron 3 of 7)	intron (NM_001375446, intron 3 of 7)	17768	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
29209	chr10	68988201	68989580	+	0	NA	promoter-TSS (NM_015634)	promoter-TSS (NM_015634)	87	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
189031	chr5	169637801	169638630	+	0	NA	intron (NR_156756, intron 1 of 52)	intron (NR_156756, intron 1 of 52)	940	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
162253	chr3	47285801	47286230	+	0	NA	intron (NM_025010, intron 1 of 9)	AluJb|SINE|Alu	3071	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
59542	chr13	27263071	27263230	+	0	NA	Intergenic	AluY|SINE|Alu	-7680	NM_206827	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
201016	chr6	141402951	141403250	+	0	NA	Intergenic	LOR1a|LTR|ERV1	719286	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
159261	chr3	12948221	12948480	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	19380	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
210609	chr7	100433901	100434300	+	0	NA	TTS (NM_001194991)	TTS (NM_001194991)	2397	NM_145030	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
123803	chr19	55160071	55161950	+	0	NA	intron (NM_178837, intron 8 of 11)	CpG	-3278	NM_000363	7137		NM_000363	ENSG00000129991	TNNI3	CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI	troponin I3, cardiac type	protein-coding
146339	chr20	49239501	49239700	+	0	NA	intron (NM_017895, intron 16 of 20)	MER1B|DNA|hAT-Charlie	20184	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
14512	chr1	144641771	144642980	+	0	NA	intron (NR_104189, intron 2 of 3).2	CpG	1006	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
173763	chr4	16893051	16893780	+	0	NA	intron (NR_130734, intron 1 of 6)	intron (NR_130734, intron 1 of 6)	5230	NM_001304434	9079		NM_001290	ENSG00000169744	LDB2	CLIM1|LDB-2|LDB1	LIM domain binding 2	protein-coding
181498	chr5	43000301	43000900	+	0	NA	Intergenic	CpG	-7267	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
188695	chr5	157294921	157295930	+	0	NA	intron (NM_014376, intron 4 of 30)	intron (NM_014376, intron 4 of 30)	26101	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
96147	chr17	39674151	39674250	+	0	NA	intron (NM_001291728, intron 3 of 6)	intron (NM_001291728, intron 3 of 6)	5747	NM_002686	5409		NM_002686	ENSG00000141744	PNMT	PENT|PNMTase	phenylethanolamine N-methyltransferase	protein-coding
189304	chr5	172133201	172134180	+	0	NA	intron (NM_005990, intron 2 of 18)	intron (NM_005990, intron 2 of 18)	54534	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
95314	chr17	35584301	35584700	+	0	NA	Intergenic	Intergenic	-2822	NM_001282	163		NM_001282	ENSG00000006125	AP2B1	ADTB2|AP105B|AP2-BETA|CLAPB1	adaptor related protein complex 2 subunit beta 1	protein-coding
67539	chr14	71119151	71119730	+	0	NA	Intergenic	AluSc8|SINE|Alu	-201036	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
111830	chr19	4523221	4523800	+	0	NA	3' UTR (NM_001013706, exon 8 of 8)	3' UTR (NM_001013706, exon 8 of 8)	-5024	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
20474	chr1	198620581	198622700	+	0	NA	Intergenic	Intergenic	-17328	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
183478	chr5	79257971	79258130	+	0	NA	intron (NM_152405, intron 1 of 10)	AluSz|SINE|Alu	21919	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
224654	chr9	20884951	20885300	+	0	NA	exon (NM_001375568, exon 20 of 43)	exon (NM_001375568, exon 20 of 43)	98198	NR_145762	109616992		NR_145762	ENSG00000202189	SNORA30B	-	small nucleolar RNA, H/ACA box 30B	snoRNA
96349	chr17	40068271	40069500	+	0	NA	intron (NM_199334, intron 1 of 8)	intron (NM_199334, intron 1 of 8)	5920	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
214601	chr7	150678571	150679150	+	0	NA	Intergenic	L1P1|LINE|L1	-6846	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
69463	chr14	94946301	94946900	+	0	NA	Intergenic	Intergenic	175958	NR_144432	108868751		NR_144432		GSC-DT	DIGIT	GSC divergent transcript	ncRNA
25303	chr10	6206651	6207030	+	0	NA	intron (NM_001314063, intron 1 of 15)	SVA_D|Retroposon|SVA	3908	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
70923	chr14	104225421	104225950	+	0	NA	intron (NR_146612, intron 1 of 2)	intron (NR_146612, intron 1 of 2)	2101	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
176276	chr4	87069171	87069330	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	62249	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
7425	chr1	32962021	32962830	+	0	NA	intron (NM_001127361, intron 1 of 8)	intron (NM_001127361, intron 1 of 8)	2384	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
28326	chr10	46325251	46325350	+	0	NA	intron (NM_001278688, intron 16 of 16)	intron (NM_001278688, intron 16 of 16)	-11961	NR_165820	653259		NR_165820		AGAP14P	AGAP14|CTGLF11P|bA145E20.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 14, pseudogene	pseudo
101580	chr17	68067571	68068130	+	0	NA	Intergenic	AluSz|SINE|Alu	31890	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
70892	chr14	103900951	103901430	+	0	NA	Intergenic	Intergenic	20339	NM_001127393	9556		NM_004894	ENSG00000156411	ATP5MJ	6.8PL|ATP5MPL|C14orf2|MLQ|MP68|PLPM	ATP synthase membrane subunit j	protein-coding
211081	chr7	102482651	102482850	+	0	NA	3' UTR (NM_001277335, exon 20 of 20)	3' UTR (NM_001277335, exon 20 of 20)	-3828	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
202700	chr6	158812371	158812530	+	0	NA	intron (NM_003379, intron 1 of 12)	MER5A|DNA|hAT-Charlie	-5529	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
20732	chr1	200896251	200896350	+	0	NA	intron (NM_001367290, intron 1 of 9)	intron (NM_001367290, intron 1 of 9)	1400	NM_001367290	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
136096	chr2	173532751	173532930	+	0	NA	Intergenic	L1PA3|LINE|L1	177968	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
46688	chr11	128755001	128755200	+	0	NA	intron (NM_001167681, intron 2 of 9)	intron (NM_001167681, intron 2 of 9)	-59077	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
217163	chr8	26292801	26293700	+	0	NA	promoter-TSS (NM_001177591)	promoter-TSS (NM_001177591)	34	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
200183	chr6	130780301	130780500	+	0	NA	Intergenic	Intergenic	-47006	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
214951	chr7	151794821	151795780	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-11038	NM_001354885	644090		NM_001354885	ENSG00000242048	PRKAG2-AS2	-	PRKAG2 antisense RNA 2	ncRNA
108510	chr18	74197651	74198150	+	0	NA	Intergenic	Intergenic	49377	NM_014177	29090		NM_014177	ENSG00000075336	TIMM21	C18orf55|HSPC154|TIM21	translocase of inner mitochondrial membrane 21	protein-coding
143576	chr20	31671201	31671600	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	33488	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
224904	chr9	32527821	32528080	+	0	NA	Intergenic	AluJo|SINE|Alu	-1754	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
226845	chr9	77981171	77981800	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	50326	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
218011	chr8	38443501	38443900	+	0	NA	intron (NM_001174064, intron 2 of 18)	intron (NM_001174064, intron 2 of 18)	24024	NM_001174066	2260		NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
43222	chr11	75438101	75438750	+	0	NA	intron (NM_030792, intron 15 of 16)	intron (NM_030792, intron 15 of 16)	-7796	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
35130	chr11	707471	707830	+	0	NA	promoter-TSS (NM_001367390)	promoter-TSS (NM_001367390)	-567	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
127440	chr2	42174871	42175450	+	0	NA	intron (NM_019063, intron 1 of 22)	AluSc8|SINE|Alu	-4929	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226370	chr9	70257301	70257530	+	0	NA	intron (NR_039990, intron 2 of 3)	L2a|LINE|L2	1459	NR_039990	100507299		NR_039990		SMC5-DT	MAMDC2-AS2|SMC5-AS1	SMC5 divergent transcript	ncRNA
233856	chrX	1518201	1518930	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	18620	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
54018	chr12	75488471	75488930	+	0	NA	intron (NM_006851, intron 2 of 5)	L2b|LINE|L2	7945	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
101669	chr17	68314651	68315330	+	0	NA	intron (NM_001352901, intron 2 of 11)	MIRb|SINE|MIR	22855	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
231667	chr9	131672571	131672930	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-21347	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
190728	chr6	326051	326150	+	0	NA	intron (NR_104473, intron 3 of 5)	intron (NR_104473, intron 3 of 5)	34043	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
19048	chr1	169703871	169704030	+	0	NA	intron (NM_000655, intron 5 of 8)	intron (NM_000655, intron 5 of 8)	4907	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
130114	chr2	74548621	74550600	+	0	NA	promoter-TSS (NM_001289165)	promoter-TSS (NM_001289165)	-84	NM_001289165	84695		NM_032603	ENSG00000115318	LOXL3	LOXL|MYP28	lysyl oxidase like 3	protein-coding
223233	chr8	143612471	143612880	+	0	NA	TTS (NM_001317783)	TTS (NM_001317783)	-3100	NR_138144	65263		NM_023078	ENSG00000104524	PYCR3	PYCRL	pyrroline-5-carboxylate reductase 3	protein-coding
98322	chr17	46257601	46258280	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-32573	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
74023	chr15	52181921	52182800	+	0	NA	intron (NR_102751, intron 2 of 2)	intron (NR_102751, intron 2 of 2)	2334	NR_102751	100129973		NR_102751		CERNA1	-	competing endogenous lncRNA 1 for miR-4707-5p and miR-4767	ncRNA
64227	chr14	23074071	23074430	+	0	NA	intron (NM_014977, intron 8 of 18)	intron (NM_014977, intron 8 of 18)	-2681	NM_001164816	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
85118	chr16	34572421	34573130	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-191295	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
38221	chr11	36415571	36415930	+	0	NA	intron (NM_001160167, intron 3 of 8)	AluSx|SINE|Alu	14753	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
88546	chr16	85453101	85453500	+	0	NA	Intergenic	(CCCT)n|Simple_repeat|Simple_repeat	-146975	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
137385	chr2	196208601	196209100	+	0	NA	intron (NM_001348768, intron 28 of 28)	L2a|LINE|L2	-37272	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
78411	chr15	92079101	92079300	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	224896	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
211200	chr7	102613001	102613650	+	0	NA	intron (NM_001079877, intron 1 of 19)	intron (NM_001079877, intron 1 of 19)	3431	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
186715	chr5	139130301	139130500	+	0	NA	intron (NM_022464, intron 1 of 9)	L1MB4|LINE|L1	67968	NM_001037633	64374		NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
90736	chr17	2026851	2026950	+	0	NA	Intergenic	AluSz|SINE|Alu	-1566	NM_178568	146760		NM_178568	ENSG00000185924	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor like 1	protein-coding
209318	chr7	76142701	76143180	+	0	NA	Intergenic	MER21A|LTR|ERVL	-34178	NR_135079	101927126		NR_135079		GTF2IP7	-	general transcription factor IIi pseudogene 7	pseudo
224753	chr9	21883651	21883950	+	0	NA	Intergenic	Intergenic	81164	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
91038	chr17	2853101	2855030	+	0	NA	intron (NM_001100398, intron 2 of 23)	CpG	57627	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
4962	chr1	24070821	24071380	+	0	NA	intron (NM_152372, intron 25 of 36)	intron (NM_152372, intron 25 of 36)	41035	NM_152372	127294		NM_152372	ENSG00000142661	MYOM3	-	myomesin 3	protein-coding
50918	chr12	49324901	49325100	+	0	NA	promoter-TSS (NR_120449)	promoter-TSS (NR_120449)	-424	NR_120449	101927267		NR_120449	ENSG00000258334	TROAP-AS1	-	TROAP and PRPH antisense RNA 1	ncRNA
85811	chr16	56979501	56980100	+	0	NA	intron (NM_000078, intron 11 of 15)	AluSz|SINE|Alu	-9757	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
81819	chr16	11560121	11561730	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	25448	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
169871	chr3	177320751	177321050	+	0	NA	intron (NR_047465, intron 1 of 1)	intron (NR_047465, intron 1 of 1)	26458	NR_047465	100820709		NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
103648	chr17	78764801	78765200	+	0	NA	intron (NM_017456, intron 1 of 12)	L2a|LINE|L2	17208	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
45447	chr11	118443271	118443980	+	0	NA	intron (NM_001197104, intron 1 of 35)	intron (NM_001197104, intron 1 of 35)	7133	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
214865	chr7	151379651	151380150	+	0	NA	Intergenic	Intergenic	-29261	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
18662	chr1	167075971	167076730	+	0	NA	intron (NM_005814, intron 1 of 6)	L2a|LINE|L2	14027	NM_005814	10223		NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
238769	chrX	154356901	154357800	+	0	NA	intron (NM_001110556, intron 29 of 47)	CpG	17284	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
108767	chr18	77131701	77133480	+	0	NA	5' UTR (NM_001025101, exon 1 of 9)	5' UTR (NM_001025101, exon 1 of 9)	193	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
22910	chr1	225895901	225896330	+	0	NA	Intergenic	AluJr|SINE|Alu	-6969	NM_020997	10637		NM_020997	ENSG00000243709	LEFTY1	LEFTB|LEFTYB	left-right determination factor 1	protein-coding
135695	chr2	168888101	168888750	+	0	NA	intron (NM_020675, intron 3 of 6)	AluY|SINE|Alu	2005	NM_020675	57405		NM_020675	ENSG00000152253	SPC25	AD024|SPBC25|hSpc25	SPC25 component of NDC80 kinetochore complex	protein-coding
195829	chr6	41335501	41335700	+	0	NA	promoter-TSS (NM_004828)	promoter-TSS (NM_004828)	-8	NM_004828	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
2538	chr1	9724701	9725850	+	0	NA	intron (NM_001350234, intron 23 of 23)	AluSp|SINE|Alu	33808	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
140288	chr2	232362621	232362880	+	0	NA	Intergenic	Intergenic	-16001	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
213259	chr7	134561821	134562480	+	0	NA	intron (NM_001080538, intron 2 of 11)	LTR12|LTR|ERV1	13040	NM_001367822	441282		NM_001080538	ENSG00000227471	AKR1B15	AKR1B10L|AKR1B10L, AK1R1B7|AKR1R1B7	aldo-keto reductase family 1 member B15	protein-coding
212367	chr7	127745371	127745730	+	0	NA	intron (NM_014390, intron 10 of 23)	intron (NM_014390, intron 10 of 23)	93356	NM_014390	27044		NM_014390	ENSG00000197157	SND1	TDRD11|TSN|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
238835	chrX	154461301	154461750	+	0	NA	exon (NM_017514, exon 3 of 33)	exon (NM_017514, exon 3 of 33)	3244	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
219508	chr8	73975871	73977030	+	0	NA	exon (NM_001040613, exon 1 of 3)	exon (NM_001040613, exon 1 of 3)	255	NM_017866	54968		NM_017866	ENSG00000175606	TMEM70	MC5DN2	transmembrane protein 70	protein-coding
62810	chr13	109753971	109754130	+	0	NA	3' UTR (NM_003749, exon 2 of 2)	3' UTR (NM_003749, exon 2 of 2)	25776	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
214739	chr7	151049951	151050050	+	0	NA	intron (NM_020321, intron 1 of 10)	intron (NM_020321, intron 1 of 10)	1469	NM_004769	9311		NM_004769	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid sensing ion channel subunit 3	protein-coding
192427	chr6	24883321	24884080	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-6335	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
205941	chr7	25994671	25995050	+	0	NA	Intergenic	Intergenic	-44874	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
84559	chr16	30584921	30586390	+	0	NA	promoter-TSS (NM_152458)	promoter-TSS (NM_152458)	42	NM_152458	146540		NM_152458	ENSG00000197162	ZNF785	ZNF688	zinc finger protein 785	protein-coding
16930	chr1	155903801	155904000	+	0	NA	intron (NM_001256821, intron 5 of 5)	AluJb|SINE|Alu	7018	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
3473	chr1	15958751	15959080	+	0	NA	intron (NM_001324138, intron 2 of 14)	intron (NM_001324138, intron 2 of 14)	17186	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
77817	chr15	88624381	88625280	+	0	NA	intron (NM_022767, intron 1 of 3)	AluSq|SINE|Alu	3490	NM_022767	64782		NM_022767	ENSG00000181026	AEN	ISG20L1|pp12744	apoptosis enhancing nuclease	protein-coding
47516	chr12	4141351	4141900	+	0	NA	Intergenic	MIR|SINE|MIR	-132137	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
43714	chr11	86040701	86041280	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	28094	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
185205	chr5	119432701	119433100	+	0	NA	Intergenic	LTR12|LTR|ERV1	-19597	NM_001199291	3295		NM_000414	ENSG00000133835	HSD17B4	DBP|MFE-2|MFP-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid 17-beta dehydrogenase 4	protein-coding
116595	chr19	18263441	18264100	+	0	NA	intron (NM_001145305, intron 3 of 3)	intron (NM_001145305, intron 3 of 3)	-8351	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
156515	chr22	41378401	41378800	+	0	NA	intron (NM_001145398, intron 1 of 3)	AluY|SINE|Alu	-3342	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
193189	chr6	29732821	29733830	+	0	NA	intron (NR_026972, intron 4 of 5).3	intron (NR_026972, intron 4 of 5).3	9891	NM_001098478	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
43675	chr11	85780771	85781550	+	0	NA	intron (NM_032943, intron 1 of 18)	THE1C|LTR|ERVL-MaLR	-23091	NM_001162953	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
139522	chr2	224570371	224570850	+	0	NA	promoter-TSS (NM_001257198)	promoter-TSS (NM_001257198)	-655	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
6336	chr1	27718301	27718500	+	0	NA	Intergenic	AluJb|SINE|Alu	-7561	NM_001143914	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
27649	chr10	32984401	32984600	+	0	NA	Intergenic	AluSz6|SINE|Alu	-26270	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
109288	chr19	551971	552130	+	0	NA	Intergenic	AluSx|SINE|Alu	7997	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
77034	chr15	78755421	78755680	+	0	NA	Intergenic	Intergenic	3513	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
237215	chrX	109485651	109486130	+	0	NA	Intergenic	Intergenic	-3804	NM_001522	2986		NM_001522	ENSG00000101890	GUCY2F	CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2	guanylate cyclase 2F, retinal	protein-coding
105191	chr17	82299551	82299980	+	0	NA	Intergenic	AluSg|SINE|Alu	-6951	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
136068	chr2	172972051	172972230	+	0	NA	intron (NR_164740, intron 9 of 30)	intron (NR_164740, intron 9 of 30)	43988	NM_001282901	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
179746	chr5	238621	239980	+	0	NA	intron (NM_001330758, intron 10 of 12)	AluSx3|SINE|Alu	20980	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
103960	chr17	79929271	79929430	+	0	NA	Intergenic	Intergenic	-2625	NR_110850	101928766		NR_110850	ENSG00000262585	LINC01979	-	long intergenic non-protein coding RNA 1979	ncRNA
230130	chr9	127724521	127725050	+	0	NA	exon (NM_001317037, exon 9 of 14)	exon (NM_001317037, exon 9 of 14)	8706	NM_144965	158248		NM_144965	ENSG00000167094	TTC16	-	tetratricopeptide repeat domain 16	protein-coding
150008	chr21	37072151	37074550	+	0	NA	promoter-TSS (NM_001330683)	promoter-TSS (NM_001330683)	96	NM_001330682	7267		NM_003316	ENSG00000182670	TTC3	DCRR1|RNF105|TPRDIII	tetratricopeptide repeat domain 3	protein-coding
118300	chr19	35420471	35420650	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	14953	NR_040046	100128682		NR_040046	ENSG00000205786	LINC01531	-	long intergenic non-protein coding RNA 1531	ncRNA
30159	chr10	74182771	74182930	+	0	NA	intron (NM_001369124, intron 1 of 9)	intron (NM_001369124, intron 1 of 9)	6087	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
130636	chr2	86082951	86083050	+	0	NA	intron (NM_015425, intron 7 of 33)	intron (NM_015425, intron 7 of 33)	22886	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
226527	chr9	71907501	71907900	+	0	NA	intron (NM_016014, intron 1 of 4)	AluSp|SINE|Alu	3493	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
131533	chr2	96604121	96604430	+	0	NA	non-coding (NR_047656, exon 16 of 20)	non-coding (NR_047656, exon 16 of 20)	33716	NR_047658	55683		NM_017991	ENSG00000114982	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
166170	chr3	111667371	111668320	+	0	NA	Intergenic	L3|LINE|CR1	-6831	NM_153268	257068		NM_153268	ENSG00000240891	PLCXD2	-	phosphatidylinositol specific phospholipase C X domain containing 2	protein-coding
66120	chr14	60099871	60100030	+	0	NA	intron (NM_022495, intron 1 of 9)	AluSz|SINE|Alu	8027	NM_001330177	64430		NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex 4	protein-coding
208534	chr7	70658321	70658580	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-473694	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
9814	chr1	53860851	53861330	+	0	NA	intron (NM_018982, intron 9 of 10)	intron (NM_018982, intron 9 of 10)	-22794	NM_001168551	55706		NM_018087	ENSG00000058804	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
194531	chr6	33306601	33307880	+	0	NA	intron (NM_172209, intron 2 of 6).2	AluSx1|SINE|Alu	6838	NM_003190	6892		NM_003190	ENSG00000231925	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein	protein-coding
75527	chr15	66567051	66567380	+	0	NA	Intergenic	L2c|LINE|L2	-1217	NR_103739	197021		NM_207338	ENSG00000188501	LCTL	KLG|KLPH	lactase like	protein-coding
45826	chr11	119365171	119366000	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	-1377	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
48803	chr12	12001371	12001530	+	0	NA	Intergenic	AluSc8|SINE|Alu	-48411	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
118965	chr19	38853671	38853830	+	0	NA	Intergenic	AluY|SINE|Alu	-1403	NM_001005335	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
145753	chr20	45114801	45115600	+	0	NA	promoter-TSS (NM_145652)	promoter-TSS (NM_145652)	-26	NM_145652	149708		NM_145652	ENSG00000175121	WFDC5	PRG5|WAP1|dJ211D12.5	WAP four-disulfide core domain 5	protein-coding
182544	chr5	65720901	65721150	+	0	NA	intron (NM_019072, intron 1 of 10)	intron (NM_019072, intron 1 of 10)	1084	NM_019072	54557		NM_019072	ENSG00000197860	SGTB	SGT2	small glutamine rich tetratricopeptide repeat co-chaperone beta	protein-coding
172781	chr4	2939301	2939980	+	0	NA	exon (NM_003703, exon 16 of 19)	exon (NM_003703, exon 16 of 19)	4094	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
194816	chr6	34263551	34263650	+	0	NA	Intergenic	Intergenic	-14492	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
197869	chr6	89087251	89087980	+	0	NA	Intergenic	Intergenic	6864	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
32327	chr10	102228421	102228900	+	0	NA	intron (NM_152310, intron 3 of 3)	intron (NM_152310, intron 3 of 3)	2361	NM_152310	83401		NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
183795	chr5	82173821	82174650	+	0	NA	intron (NM_031482, intron 4 of 7)	intron (NM_031482, intron 4 of 7)	104119	NM_001025	6228		NM_001025	ENSG00000186468	RPS23	BTDD|MABAS|MCINS|PAMAS|S23|uS12	ribosomal protein S23	protein-coding
178663	chr4	152495271	152495430	+	0	NA	intron (NM_001349798, intron 2 of 13)	AluSx|SINE|Alu	-5934	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
129976	chr2	73996371	73996530	+	0	NA	intron (NM_001287491, intron 2 of 11)	intron (NM_001287491, intron 2 of 11)	-6242	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
184324	chr5	96932701	96933370	+	0	NA	Intergenic	Intergenic	-3045	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
44233	chr11	96411121	96411450	+	0	NA	Intergenic	L1PA2|LINE|L1	21272	NM_001261833	8690		NM_003772	ENSG00000183340	JRKL	HHMJG	JRK like	protein-coding
87670	chr16	74601051	74601950	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	5614	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
141825	chr20	379621	379880	+	0	NA	promoter-TSS (NM_021158)	promoter-TSS (NM_021158)	-879	NM_021158	57761		NM_021158	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
103305	chr17	77879221	77879980	+	0	NA	non-coding (NR_028337, exon 2 of 2)	non-coding (NR_028337, exon 2 of 2)	4487	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
82686	chr16	20383321	20383630	+	0	NA	intron (NM_174924, intron 3 of 11)	intron (NM_174924, intron 3 of 11)	21262	NM_174924	204474		NM_174924	ENSG00000169340	PDILT	PDIA7	protein disulfide isomerase like, testis expressed	protein-coding
205675	chr7	23017321	23017580	+	0	NA	Intergenic	Intergenic	-3320	NM_001363467	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
47712	chr12	6449901	6450380	+	0	NA	intron (NR_015382, intron 1 of 5)	intron (NR_015382, intron 1 of 5)	1377	NR_015382	678655		NR_015382	ENSG00000215039	CD27-AS1	-	CD27 antisense RNA 1	ncRNA
21603	chr1	206558001	206558680	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	1176	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
178764	chr4	153344071	153345830	+	0	NA	intron (NM_001253861, intron 1 of 6)	CpG	262	NR_045605	84057		NM_032117	ENSG00000121211	MND1	GAJ	meiotic nuclear divisions 1	protein-coding
139726	chr2	229715951	229716130	+	0	NA	Intergenic	Intergenic	-1485	NM_139072	92737		NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch like EGF repeat containing	protein-coding
96641	chr17	40604121	40604730	+	0	NA	Intergenic	Intergenic	-38953	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
6555	chr1	28652871	28653250	+	0	NA	Intergenic	AluSz|SINE|Alu	4460	NR_004407	26824		NR_004407	ENSG00000274978	RNU11	RNU11-1|U11	RNA, U11 small nuclear	snRNA
73032	chr15	40805801	40806000	+	0	NA	intron (NM_018163, intron 1 of 10)	intron (NM_018163, intron 1 of 10)	-1189	NM_001258420	84936		NM_032850	ENSG00000166140	ZFYVE19	ANCHR|MPFYVE|PFIC9	zinc finger FYVE-type containing 19	protein-coding
133016	chr2	111725751	111726100	+	0	NA	Intergenic	Intergenic	45209	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
122418	chr19	49450321	49450650	+	0	NA	intron (NM_017916, intron 2 of 8)	AluSc8|SINE|Alu	1329	NM_017916	55011		NM_017916	ENSG00000104872	PIH1D1	DNAAF14|MOT48|NOP17|Pih1	PIH1 domain containing 1	protein-coding
161363	chr3	40464171	40465000	+	0	NA	3' UTR (NM_003973, exon 6 of 6)	3' UTR (NM_003973, exon 6 of 6)	7246	NM_001034996	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
145654	chr20	44912251	44912350	+	0	NA	intron (NM_001372179, intron 1 of 14)	intron (NM_001372179, intron 1 of 14)	2240	NR_134987	80336		NM_001124756	ENSG00000101104	PABPC1L	C20orf119|EPAB|PABPC1L1|dJ1069P2.3	poly(A) binding protein cytoplasmic 1 like	protein-coding
128804	chr2	62413521	62413980	+	0	NA	Intergenic	Intergenic	92445	NM_198276	200728		NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
206076	chr7	27177021	27177280	+	0	NA	intron (NR_037939, intron 1 of 1)	intron (NR_037939, intron 1 of 1)	2711	NR_037939	3206		NM_018951	ENSG00000253293	HOXA10	HOX1|HOX1.8|HOX1H|PL	homeobox A10	protein-coding
79968	chr16	1779671	1780130	+	0	NA	intron (NM_080861, intron 2 of 6)	intron (NM_080861, intron 2 of 6)	1922	NM_001324081	90864		NM_080861	ENSG00000162032	SPSB3	C16orf31|SSB3	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding
118851	chr19	38640521	38640780	+	0	NA	Intergenic	MIR|SINE|MIR	-6999	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
60428	chr13	40992501	40993350	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	-10026	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
22635	chr1	223713741	223714380	+	0	NA	intron (NM_001748, intron 1 of 20)	L2c|LINE|L2	1521	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
179542	chr4	185011471	185011650	+	0	NA	Intergenic	L2c|LINE|L2	-7281	NM_001300782	391723		NM_001029887	ENSG00000187821	HELT	HCM1228|HESL|Mgn|bHLHb44	helt bHLH transcription factor	protein-coding
81484	chr16	8937751	8938130	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	-1301	NM_001286457	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
145904	chr20	45966501	45966950	+	0	NA	intron (NM_022095, intron 6 of 27)	AluSx1|SINE|Alu	5478	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
91255	chr17	3966201	3966730	+	0	NA	Intergenic	AluJb|SINE|Alu	-2001	NM_174956	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
50852	chr12	49129551	49131000	+	0	NA	intron (NM_006082, intron 1 of 3)	intron (NM_006082, intron 1 of 3)	1120	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
122685	chr19	49887551	49888000	+	0	NA	promoter-TSS (NR_039905)	promoter-TSS (NR_039905)	-400	NR_039905	100616314		NR_039905	ENSG00000284394	MIR4750	mir-4750	microRNA 4750	ncRNA
5429	chr1	25561471	25562000	+	0	NA	intron (NM_015627, intron 4 of 8)	intron (NM_015627, intron 4 of 8)	18129	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
35844	chr11	2310421	2310680	+	0	NA	intron (NM_139022, intron 4 of 9)	intron (NM_139022, intron 4 of 9)	-7410	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
215123	chr7	155350071	155350630	+	0	NA	Intergenic	CpG	17583	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
88308	chr16	84147751	84148050	+	0	NA	intron (NM_178452, intron 1 of 11)	AluSx1|SINE|Alu	2592	NM_178452	123872		NM_178452	ENSG00000154099	DNAAF1	CILD13|DAU1|LRRC50|ODA7|swt	dynein axonemal assembly factor 1	protein-coding
27341	chr10	30660371	30660530	+	0	NA	Intergenic	Intergenic	-30697	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
16615	chr1	155076421	155076750	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-2252	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
20536	chr1	198694221	198695030	+	0	NA	3' UTR (NM_001267798, exon 4 of 4)	3' UTR (NM_001267798, exon 4 of 4)	55585	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
221163	chr8	119873151	119875250	+	0	NA	intron (NM_001283012, intron 1 of 6)	CpG	478	NM_022783	64798		NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6|hDEPTOR	DEP domain containing MTOR interacting protein	protein-coding
161069	chr3	38081471	38081850	+	0	NA	intron (NM_001321153, intron 6 of 36)	SVA_F|Retroposon|SVA	42452	NM_007335	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
4888	chr1	23793301	23794230	+	0	NA	intron (NM_007260, intron 5 of 9)	intron (NM_007260, intron 5 of 9)	2620	NM_007260	11313		NM_007260	ENSG00000011009	LYPLA2	APT-2|APT2|DJ886K2.4	lysophospholipase 2	protein-coding
86729	chr16	67594201	67594400	+	0	NA	intron (NM_001191022, intron 2 of 9)	AluJb|SINE|Alu	23527	NM_001363916	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
216874	chr8	22639071	22640530	+	0	NA	TTS (NR_027715)	TTS (NR_027715)	2409	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
16774	chr1	155490001	155490200	+	0	NA	intron (NM_018489, intron 2 of 27)	AluY|SINE|Alu	56920	NR_034180	645682		NR_034180	ENSG00000237872	POU5F1P4	OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1	POU class 5 homeobox 1 pseudogene 4	pseudo
69599	chr14	97408721	97409630	+	0	NA	Intergenic	Intergenic	-49641	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
40797	chr11	64899271	64899630	+	0	NA	intron (NM_015104, intron 31 of 40)	intron (NM_015104, intron 31 of 40)	-1013	NR_106808	102466192		NR_106808	ENSG00000274986	MIR6750	hsa-mir-6750	microRNA 6750	ncRNA
199638	chr6	121651421	121651880	+	0	NA	Intergenic	Intergenic	216004	NM_000165	2697		NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
120560	chr19	44984071	44984230	+	0	NA	intron (NM_001282175, intron 5 of 13)	intron (NM_001282175, intron 5 of 13)	-17314	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
235171	chrX	41180051	41180630	+	0	NA	intron (NM_001039590, intron 21 of 44)	intron (NM_001039590, intron 21 of 44)	94895	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
227081	chr9	85609921	85610450	+	0	NA	intron (NM_001330701, intron 17 of 25)	intron (NM_001330701, intron 17 of 25)	131769	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
207557	chr7	44856701	44857480	+	0	NA	Intergenic	LTR50|LTR|ERVL	-8964	NM_138635	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
152643	chr22	21520701	21521100	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3409	NR_003700	375133		NR_003700	ENSG00000293427	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
34185	chr10	128146871	128147230	+	0	NA	Intergenic	Intergenic	-20627	NM_001145966	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
137559	chr2	197242551	197243050	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	44809	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
143772	chr20	32411971	32412630	+	0	NA	intron (NM_015338, intron 3 of 11)	L1MC4|LINE|L1	53235	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
164500	chr3	61251121	61251900	+	0	NA	promoter-TSS (NM_002012)	promoter-TSS (NM_002012)	-49	NR_148921	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
6857	chr1	31062221	31063030	+	0	NA	intron (NM_014676, intron 1 of 21)	AluSx4|SINE|Alu	3092	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
47224	chr12	945151	945680	+	0	NA	intron (NR_123713, intron 1 of 13)	intron (NR_123713, intron 1 of 13)	4279	NM_001297422	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
56248	chr12	111995701	111995900	+	0	NA	intron (NM_138341, intron 2 of 9)	AluJb|SINE|Alu	17365	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
213883	chr7	142425321	142425780	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-48977	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
111440	chr19	3807401	3807900	+	0	NA	intron (NM_015174, intron 17 of 18)	intron (NM_015174, intron 17 of 18)	-5851	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
120689	chr19	45159321	45159580	+	0	NA	intron (NM_198478, intron 1 of 3)	intron (NM_198478, intron 1 of 3)	700	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
21069	chr1	203300771	203301480	+	0	NA	non-coding (NR_034150, exon 2 of 3)	non-coding (NR_034150, exon 2 of 3)	4200	NR_034150	730227		NR_034150	ENSG00000233791	BTG2-DT	LINC01136	BTG2 divergent transcript	ncRNA
25061	chr10	3802451	3802550	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-17219	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
87521	chr16	71891851	71892630	+	0	NA	Intergenic	Intergenic	-2168	NM_001270976	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
37246	chr11	14622621	14623350	+	0	NA	intron (NM_148976, intron 1 of 10)	ERV3-16A3_I-int|LTR|ERVL	20649	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
28113	chr10	43402251	43402680	+	0	NA	intron (NM_001098204, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	-5119	NM_001098207	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
90532	chr17	1483471	1483650	+	0	NA	intron (NM_001080779, intron 3 of 31)	intron (NM_001080779, intron 3 of 31)	1841	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
227200	chr9	88076351	88076850	+	0	NA	intron (NR_135138, intron 1 of 1)	CpG	1300	NR_135138	102724156		NR_135137	ENSG00000287750	LINC03026	-	long intergenic non-protein coding RNA 3026	ncRNA
120717	chr19	45300651	45300950	+	0	NA	intron (NM_001199867, intron 16 of 16)	MLT1K|LTR|ERVL-MaLR	22075	NM_001824	1158		NM_001824	ENSG00000104879	CKM	CKMM|CPK-M|M-CK	creatine kinase, M-type	protein-coding
2168	chr1	8448921	8449300	+	0	NA	intron (NM_012102, intron 12 of 23)	intron (NM_012102, intron 12 of 23)	24465	NR_125999	102724552		NR_125999		RERE-AS1	-	RERE antisense RNA 1	ncRNA
163048	chr3	49900571	49901330	+	0	NA	intron (NM_002447, intron 1 of 19)	intron (NM_002447, intron 1 of 19)	2687	NM_001318913	4486		NM_002447	ENSG00000164078	MST1R	CD136|CDw136|NPCA3|PTK8|RON|SEA|p185-Ron	macrophage stimulating 1 receptor	protein-coding
223421	chr8	143947071	143947400	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	-1956	NR_030383	724031		NR_030383	ENSG00000207574	MIR661	MIRN661|hsa-mir-661	microRNA 661	ncRNA
36443	chr11	5600301	5600650	+	0	NA	intron (NM_001198645, intron 1 of 5)	intron (NM_001198645, intron 1 of 5)	3838	NM_001003818	117854		NM_058166	ENSG00000121236	TRIM6	RNF89	tripartite motif containing 6	protein-coding
88742	chr16	86449571	86449730	+	0	NA	Intergenic	Intergenic	59210	NR_033925	400550		NR_033925	ENSG00000268388	FENDRR	FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21	FOXF1 adjacent non-coding developmental regulatory RNA	ncRNA
146682	chr20	50521471	50522280	+	0	NA	intron (NM_001278618, intron 1 of 8)	MER102a|DNA|hAT-Charlie	11492	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138182	chr2	202651221	202651480	+	0	NA	intron (NM_173511, intron 1 of 7)	AluSx1|SINE|Alu	16381	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
192902	chr6	27583301	27583500	+	0	NA	Intergenic	Intergenic	-110282	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
141547	chr2	241353201	241353400	+	0	NA	3' UTR (NM_006155, exon 13 of 13)	3' UTR (NM_006155, exon 13 of 13)	-2985	NM_001282984	9855		NM_014808	ENSG00000006607	FARP2	FIR|FRG|PLEKHC3	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein-coding
80585	chr16	2885051	2885380	+	0	NA	intron (NM_138439, intron 1 of 3)	AluY|SINE|Alu	2000	NM_138439	114984		NM_138439	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
708	chr1	1425421	1425980	+	0	NA	promoter-TSS (NM_001146685)	promoter-TSS (NM_001146685)	-428	NM_001146685	643965		NM_001146685	ENSG00000205116	TMEM88B	-	transmembrane protein 88B	protein-coding
134935	chr2	151423101	151423300	+	0	NA	intron (NM_018151, intron 8 of 35)	Tigger17a|DNA|TcMar-Tigger	13298	NM_001177665	55183		NM_018151	ENSG00000080345	RIF1	-	replication timing regulatory factor 1	protein-coding
177306	chr4	109646921	109647380	+	0	NA	intron (NM_017918, intron 1 of 7)	L1MC1|LINE|L1	56295	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
197735	chr6	87154671	87156420	+	0	NA	promoter-TSS (NM_001351444)	promoter-TSS (NM_001351444)	-20	NM_015021	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
153595	chr22	27329351	27329650	+	0	NA	Intergenic	Intergenic	18849	NR_134581	100507657		NR_134581	ENSG00000226741	LINC02554	-	long intergenic non-protein coding RNA 2554	ncRNA
113515	chr19	10109521	10109900	+	0	NA	promoter-TSS (NR_003688)	promoter-TSS (NR_003688)	-39	NR_003688	100113382		NR_003688	ENSG00000238531	SNORD105B	-	small nucleolar RNA, C/D box 105B	snoRNA
79324	chr16	568451	568750	+	0	NA	3' UTR (NM_001301159, exon 2 of 2)	3' UTR (NM_001301159, exon 2 of 2)	-1368	NM_148920	9091		NM_004204	ENSG00000007541	PIGQ	DEE77|EIEE77|GPI1|GPIBD19|MCAHS4|c407A10.1	phosphatidylinositol glycan anchor biosynthesis class Q	protein-coding
63081	chr13	113184721	113185450	+	0	NA	intron (NM_001320657, intron 8 of 13)	intron (NM_001320657, intron 8 of 13)	-23108	NM_001278513	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
131112	chr2	90289701	90290850	+	0	NA	Intergenic	(CCAAGCCAG)n|Simple_repeat|Simple_repeat	-652368	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
152744	chr22	21702951	21703550	+	0	NA	intron (NM_013313, intron 4 of 4)	intron (NM_013313, intron 4 of 4)	32544	NM_013313	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
192652	chr6	26175351	26175980	+	0	NA	Intergenic	Intergenic	-8096	NM_003523	8344		NM_003523	ENSG00000274290	H2BC6	H2B.h|H2B/h|H2BC10|H2BC4|H2BC7|H2BC8|H2BFH|HIST1H2BE|dJ221C16.8	H2B clustered histone 6	protein-coding
191187	chr6	5214851	5215050	+	0	NA	intron (NM_001164840, intron 2 of 2)	intron (NM_001164840, intron 2 of 2)	46000	NM_001318782	57128		NM_020408	ENSG00000214113	LYRM4	C6orf149|CGI-203|COXPD19|ISD11	LYR motif containing 4	protein-coding
206192	chr7	28178701	28180200	+	0	NA	intron (NM_175061, intron 1 of 4)	CpG	-1007	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
121280	chr19	46715651	46716500	+	0	NA	intron (NM_001079881, intron 2 of 18)	intron (NM_001079881, intron 2 of 18)	1039	NM_016457	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
4358	chr1	20675221	20675480	+	0	NA	intron (NM_020816, intron 11 of 14)	AluY|SINE|Alu	-13981	NM_005216	1650		NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein-coding
151575	chr21	46621001	46621200	+	0	NA	Intergenic	Intergenic	-14495	NM_001286677	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
215770	chr8	2117901	2118100	+	0	NA	intron (NM_003970, intron 28 of 36).2	intron (NM_003970, intron 28 of 36).2	41411	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
229042	chr9	114329251	114329350	+	0	NA	promoter-TSS (NM_000608)	promoter-TSS (NM_000608)	-569	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
72953	chr15	40455101	40455930	+	0	NA	intron (NR_125372, intron 1 of 4)	intron (NR_125372, intron 1 of 4)	14562	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
29925	chr10	73360501	73360700	+	0	NA	Intergenic	Intergenic	-1736	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
160885	chr3	33715871	33716380	+	0	NA	intron (NM_001375705, intron 1 of 36)	L2|LINE|L2	2129	NM_001365628	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
134502	chr2	143333601	143334130	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	204446	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
206049	chr7	27150471	27151350	+	0	NA	promoter-TSS (NM_001384336)	promoter-TSS (NM_001384336)	40	NM_001384336	3200		NM_030661	ENSG00000105997	HOXA3	HOX1|HOX1E	homeobox A3	protein-coding
136047	chr2	172549721	172550500	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-5263	NR_103731	5163		NM_002610	ENSG00000152256	PDK1	-	pyruvate dehydrogenase kinase 1	protein-coding
157544	chr22	45577801	45578350	+	0	NA	intron (NM_006486, intron 16 of 16)	MIR3|SINE|MIR	27572	NR_131244	100506737		NR_131244	ENSG00000238120	LINC01589	TCONS_00029353	long intergenic non-protein coding RNA 1589	ncRNA
56951	chr12	120486901	120487300	+	0	NA	intron (NM_001037494, intron 1 of 2)	AluY|SINE|Alu	8846	NR_038854	100506668		NR_038854	ENSG00000248008	NRAV	DYNLL1-AS1|DYNLL1AS1	negative regulator of antiviral response	ncRNA
192535	chr6	25119071	25119480	+	0	NA	intron (NR_027626, intron 2 of 6)	L1MB7|LINE|L1	18548	NR_002174	8418		NM_003570	ENSG00000293489	CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
11918	chr1	93442101	93442300	+	0	NA	Intergenic	LTR3B|LTR|ERVK	-5918	NM_017737	54874		NM_017737	ENSG00000137942	FNBP1L	C1orf39|TOCA1	formin binding protein 1 like	protein-coding
128210	chr2	53993401	53993630	+	0	NA	intron (NM_001320587, intron 2 of 5)	AluSx1|SINE|Alu	22402	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
169093	chr3	154320351	154320850	+	0	NA	intron (NM_020865, intron 1 of 24)	L2b|LINE|L2	3887	NM_020865	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
198117	chr6	90382921	90383830	+	0	NA	Intergenic	Intergenic	70633	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
229199	chr9	114696671	114697780	+	0	NA	Intergenic	Intergenic	-15033	NM_001371884	100505478		NM_001199233	ENSG00000230601	TEX48	-	testis expressed 48	protein-coding
6387	chr1	27891321	27892100	+	0	NA	3' UTR (NM_001297558, exon 9 of 9)	3' UTR (NM_001297558, exon 9 of 9)	19166	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
77618	chr15	85400951	85401530	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	20637	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
33072	chr10	110887201	110887780	+	0	NA	intron (NM_145341, intron 6 of 12)	intron (NM_145341, intron 6 of 12)	-10600	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
174785	chr4	47933801	47934600	+	0	NA	intron (NR_125879, intron 1 of 2)	intron (NR_125879, intron 1 of 2)	-19533	NM_001278623	152518		NM_152995	ENSG00000170448	NFXL1	CDZFP|HOZFP|OZFP|URCC5	nuclear transcription factor, X-box binding like 1	protein-coding
211257	chr7	102674121	102676280	+	0	NA	Intergenic	LTR37B|LTR|ERV1	-3465	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
98104	chr17	45612021	45612280	+	0	NA	Intergenic	HAL1ME|LINE|L1	-8179	NR_138259	147081		NM_152466	ENSG00000293460	LINC02210	C17orf69|CRHR1-IT1	long intergenic non-protein coding RNA 2210	ncRNA
236244	chrX	65741801	65742000	+	0	NA	TTS (NM_002444)	TTS (NM_002444)	74246	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
161110	chr3	38202971	38203330	+	0	NA	intron (NM_005109, intron 4 of 17)	LTR13A|LTR|ERVK	37613	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
121334	chr19	46781521	46781780	+	0	NA	intron (NM_005628, intron 4 of 7)	intron (NM_005628, intron 4 of 7)	3164	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
214528	chr7	150510001	150510530	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-4607	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
203533	chr7	835971	836130	+	0	NA	intron (NM_001367695, intron 2 of 19)	intron (NM_001367695, intron 2 of 19)	3574	NM_001130965	23353		NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
116826	chr19	18567051	18567630	+	0	NA	intron (NM_001171948, intron 5 of 5)	intron (NM_001171948, intron 5 of 5)	-4390	NM_001321017	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
16254	chr1	153969101	153970180	+	0	NA	intron (NR_045658, intron 3 of 8)	AluJb|SINE|Alu	1390	NM_001255981	148327		NM_130898	ENSG00000143578	CREB3L4	AIBZIP|ATCE1|CREB3|CREB4|JAL|hJAL	cAMP responsive element binding protein 3 like 4	protein-coding
151462	chr21	46202801	46203080	+	0	NA	intron (NM_001145437, intron 16 of 20)	intron (NM_001145437, intron 16 of 20)	-8781	NR_145780	109623452		NR_145780		SNORD159	-	small nucleolar RNA, C/D box 159	snoRNA
32097	chr10	101145521	101145850	+	0	NA	Intergenic	Intergenic	-4419	NR_130724	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
44315	chr11	102374551	102375050	+	0	NA	intron (NM_001256166, intron 6 of 8)	L1PA2|LINE|L1	27426	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
124681	chr2	3461651	3461750	+	0	NA	intron (NM_016030, intron 8 of 11)	intron (NM_016030, intron 8 of 11)	56047	NM_001306077	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
141792	chr20	237671	238380	+	0	NA	Intergenic	Intergenic	10767	NM_080831	140881		NM_080831	ENSG00000125903	DEFB129	C20orf87|DEFB-29|DEFB29|bA530N10.3|hBD-29	defensin beta 129	protein-coding
111054	chr19	3109601	3109850	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	15363	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
48071	chr12	7133451	7133750	+	0	NA	exon (NM_014718, exon 3 of 18)	exon (NM_014718, exon 3 of 18)	3229	NM_014718	9746		NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
129949	chr2	73924571	73924750	+	0	NA	Intergenic	AluY|SINE|Alu	-2220	NR_134898	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
121001	chr19	45773101	45773900	+	0	NA	intron (NM_001081560, intron 9 of 14)	intron (NM_001081560, intron 9 of 14)	-4248	NM_175875	147912		NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
57623	chr12	122503371	122503730	+	0	NA	TTS (NM_023012)	TTS (NM_023012)	-2618	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
185182	chr5	119362771	119362930	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	6831	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
71407	chr14	105535071	105536030	+	0	NA	Intergenic	AluY|SINE|Alu	3695	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
231960	chr9	133148301	133148700	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	710	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
62545	chr13	99626851	99627350	+	0	NA	intron (NM_206808, intron 1 of 8)	intron (NM_206808, intron 1 of 8)	-15959	NR_036191	100422861		NR_036191	ENSG00000263615	MIR4306	mir-4306	microRNA 4306	ncRNA
183822	chr5	83472721	83473930	+	0	NA	intron (NM_001164097, intron 1 of 13)	CpG	1581	NM_004385	1462		NM_004385	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
226435	chr9	71628301	71628530	+	0	NA	Intergenic	Intergenic	140098	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
14716	chr1	145958971	145959130	+	0	NA	TTS (NM_001039888)	TTS (NM_001039888)	-1033	NM_153713	128077		NM_153713	ENSG00000271601	LIX1L	-	limb and CNS expressed 1 like	protein-coding
127830	chr2	44955451	44956100	+	0	NA	Intergenic	CpG	-13897	NR_103786	100506108		NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA
168180	chr3	140898321	140898680	+	0	NA	Intergenic	Intergenic	-43336	NM_018155	55186		NM_018155	ENSG00000114120	SLC25A36	HHF8|PNC2	solute carrier family 25 member 36	protein-coding
106942	chr18	26656671	26657130	+	0	NA	intron (NM_001258222, intron 1 of 4)	CpG	573	NM_001258222	284252		NM_198991	ENSG00000134504	KCTD1	C18orf5	potassium channel tetramerization domain containing 1	protein-coding
212348	chr7	127514421	127514780	+	0	NA	Intergenic	Intergenic	37717	NR_110024	100506682		NR_110024	ENSG00000226770	LINC03012	-	long intergenic non-protein coding RNA 3012	ncRNA
114984	chr19	14034571	14035250	+	0	NA	intron (NM_004843, intron 2 of 13)	AluYm1|SINE|Alu	3148	NM_004843	9466		NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
202757	chr6	159041371	159041530	+	0	NA	exon (NM_138810, exon 6 of 8)	exon (NM_138810, exon 6 of 8)	903	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
16432	chr1	154569301	154569750	+	0	NA	exon (NM_000748, exon 2 of 6)	exon (NM_000748, exon 2 of 6)	1747	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
54353	chr12	89697271	89697850	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	11278	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
132759	chr2	109795421	109795680	+	0	NA	intron (NM_001384364, intron 1 of 22).2	intron (NM_001384364, intron 1 of 22).2	941	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
59746	chr13	29954021	29955080	+	0	NA	Intergenic	Intergenic	18019	NR_033889	440131		NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
108748	chr18	77111901	77112330	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	20668	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
43503	chr11	78574021	78575350	+	0	NA	5' UTR (NM_024678, exon 1 of 14)	5' UTR (NM_024678, exon 1 of 14)	179	NM_024678	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
106024	chr18	8389751	8389850	+	0	NA	intron (NM_001378146, intron 28 of 29)	intron (NM_001378146, intron 28 of 29)	-22766	NR_024419	100192426		NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA
76586	chr15	75349751	75350650	+	0	NA	intron (NR_046311, intron 3 of 10)	intron (NR_046311, intron 3 of 10)	2365	NR_046311	79661		NM_024608	ENSG00000140398	NEIL1	FPG1|NEI1|hFPG1	nei like DNA glycosylase 1	protein-coding
36819	chr11	9703301	9703500	+	0	NA	intron (NM_001297714, intron 2 of 10)	L2c|LINE|L2	39323	NM_015055	23075		NM_015055	ENSG00000133789	SWAP70	HSPC321|SWAP-70	switching B cell complex subunit SWAP70	protein-coding
46887	chr11	134036401	134037950	+	0	NA	intron (NR_027276, intron 1 of 2)	CpG	4903	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
118357	chr19	35647951	35649450	+	0	NA	intron (NM_001863, intron 1 of 3)	MIR|SINE|MIR	377	NM_001863	1340		NM_001863	ENSG00000126267	COX6B1	COX6B|COXG|COXVIb1|MC4DN7	cytochrome c oxidase subunit 6B1	protein-coding
101856	chr17	74205251	74205580	+	0	NA	intron (NM_000999, intron 3 of 4)	intron (NM_000999, intron 3 of 4)	1737	NM_001035258	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
65194	chr14	49633421	49636280	+	0	NA	promoter-TSS (NM_001378453)	promoter-TSS (NM_001378453)	394	NM_001083908	55172		NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
128037	chr2	47400571	47400730	+	0	NA	Intergenic	AluSp|SINE|Alu	-2417	NM_001258281	4436		NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2|LYNCH1|MMRCS2|MSH-2|hMSH2	mutS homolog 2	protein-coding
103667	chr17	78787051	78787350	+	0	NA	TTS (NM_001385169)	TTS (NM_001385169)	-4858	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
187643	chr5	143016671	143017100	+	0	NA	intron (NR_146198, intron 12 of 22)	intron (NR_146198, intron 12 of 22)	-147975	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
233669	chrX	1092971	1093880	+	0	NA	Intergenic	Intergenic	119224	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
221310	chr8	123032071	123032430	+	0	NA	intron (NM_024295, intron 1 of 7)	AluJr|SINE|Alu	-6478	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
178286	chr4	145084301	145084500	+	0	NA	intron (NR_046345, intron 1 of 2)	L2b|LINE|L2	12982	NM_001318367	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
22412	chr1	220042901	220043180	+	0	NA	intron (NM_004446, intron 1 of 31)	L1ME1|LINE|L1	3465	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
87409	chr16	70577971	70578130	+	0	NA	TTS (NM_012426)	TTS (NM_012426)	-1845	NM_152456	146433		NM_152456	ENSG00000157368	IL34	C16orf77|IL-34	interleukin 34	protein-coding
91775	chr17	6996171	6996330	+	0	NA	exon (NM_000697, exon 1 of 14)	exon (NM_000697, exon 1 of 14)	201	NM_000697	239		NM_000697	ENSG00000108839	ALOX12	12-LOX|12S-LOX|LOG12	arachidonate 12-lipoxygenase, 12S type	protein-coding
66577	chr14	63475871	63476030	+	0	NA	intron (NM_006246, intron 2 of 13)	MER131|DNA?|DNA?	32288	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
227814	chr9	93239651	93239750	+	0	NA	intron (NM_001282394, intron 5 of 29)	intron (NM_001282394, intron 5 of 29)	54770	NM_006648	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
53067	chr12	57720721	57721380	+	0	NA	3' UTR (NM_001017958, exon 15 of 15)	3' UTR (NM_001017958, exon 15 of 15)	-5190	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
60646	chr13	42425271	42425450	+	0	NA	intron (NR_135319, intron 1 of 3)	L1PA2|LINE|L1	468	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
83427	chr16	27252851	27253800	+	0	NA	intron (NM_145080, intron 2 of 7)	MER21C|LTR|ERVL	-14880	NR_037184	400512		NR_037184	ENSG00000245888	NSMCE1-DT	-	NSMCE1 divergent transcript	ncRNA
171216	chr3	195761471	195762180	+	0	NA	intron (NM_018406, intron 14 of 24)	CpG	40847	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
41059	chr11	65489701	65489900	+	0	NA	Intergenic	Intergenic	-7938	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
45051	chr11	117048551	117048930	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	49688	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
233580	chrX	307001	308030	+	0	NA	intron (NM_012227, intron 8 of 9)	CpG-29362	11304	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
228380	chr9	99114471	99114980	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	9612	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
79094	chr16	184171	184730	+	0	NA	Intergenic	Intergenic	3991	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
130755	chr2	86813971	86814130	+	0	NA	Intergenic	L1ME3G|LINE|L1	-5654	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
195410	chr6	36839221	36840880	+	0	NA	promoter-TSS (NM_020939)	promoter-TSS (NM_020939)	-52	NM_001376889	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
91614	chr17	5382451	5382550	+	0	NA	intron (NM_001083585, intron 16 of 16)	AluSx|SINE|Alu	-37141	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
132931	chr2	111439051	111439630	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	55821	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
58190	chr12	125067821	125068080	+	0	NA	intron (NM_023928, intron 1 of 17)	MIRb|SINE|MIR	2515	NM_001319839	65985		NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
177581	chr4	120049701	120050300	+	0	NA	Intergenic	Intergenic	16848	NM_002358	4085		NM_002358	ENSG00000164109	MAD2L1	HSMAD2|MAD2	mitotic arrest deficient 2 like 1	protein-coding
187744	chr5	143648851	143648950	+	0	NA	Intergenic	Intergenic	-30960	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
54634	chr12	92898901	92899430	+	0	NA	intron (NM_003566, intron 1 of 28)	intron (NM_003566, intron 1 of 28)	30130	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
2397	chr1	9541121	9541600	+	0	NA	intron (NM_032315, intron 1 of 6)	AluY|SINE|Alu	1895	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
129588	chr2	70075071	70075230	+	0	NA	intron (NR_033872, intron 4 of 10)	AluY|SINE|Alu	11865	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
231648	chr9	131627451	131629060	+	0	NA	intron (NM_001377935, intron 8 of 26)	intron (NM_001377935, intron 8 of 26)	23148	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
238445	chrX	151562201	151562930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1110	NM_173493	139135		NM_173493	ENSG00000166049	PASD1	CT63|CT64|OXTES1	PAS domain containing repressor 1	protein-coding
96010	chr17	39224351	39225300	+	0	NA	intron (NM_001351360, intron 1 of 10)	CpG	1120	NM_198993	342667		NM_198993	ENSG00000141750	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
39606	chr11	61360101	61360300	+	0	NA	intron (NM_153611, intron 1 of 6)	AluJb|SINE|Alu	1682	NM_001300763	220002		NM_153611	ENSG00000162144	CYB561A3	CYBASC3|LCYTB	cytochrome b561 family member A3	protein-coding
186154	chr5	134174121	134174500	+	0	NA	intron (NM_170679, intron 1 of 5)	intron (NM_170679, intron 1 of 5)	2640	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
29717	chr10	72077451	72077830	+	0	NA	intron (NM_014767, intron 2 of 11)	intron (NM_014767, intron 2 of 11)	10911	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
219621	chr8	80122051	80123180	+	0	NA	intron (NR_105035, intron 1 of 6)	MER51D|LTR|ERV1	-41784	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
162889	chr3	49386971	49387430	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluSc8|SINE|Alu	24776	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
85242	chr16	48347051	48347580	+	0	NA	intron (NM_031490, intron 12 of 14)	intron (NM_031490, intron 12 of 14)	18572	NM_001006610	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
136229	chr2	174594651	174594850	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	3054	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
210812	chr7	100876671	100876930	+	0	NA	intron (NM_015908, intron 2 of 19)	L2b|LINE|L2	1697	NM_001128852	51593		NM_015908	ENSG00000087087	SRRT	ARS2|ASR2|serrate	serrate, RNA effector molecule	protein-coding
206227	chr7	28926671	28927350	+	0	NA	Intergenic	Intergenic	31320	NM_014817	9865		NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
58165	chr12	124953121	124953380	+	0	NA	intron (NM_032656, intron 20 of 26)	intron (NM_032656, intron 20 of 26)	35881	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
181775	chr5	50744451	50745950	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	77786	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
179797	chr5	379501	379700	+	0	NA	intron (NR_165159, intron 6 of 13)	L1MC4|LINE|L1	56990	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
92416	chr17	8385421	8385830	+	0	NA	Intergenic	Intergenic	-2432	NM_000987	6154		NM_000987	ENSG00000161970	RPL26	DBA11|L26|uL24	ribosomal protein L26	protein-coding
32129	chr10	101234751	101235180	+	0	NA	intron (NR_029380, intron 2 of 2)	intron (NR_029380, intron 2 of 2)	5371	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
200458	chr6	135114521	135115050	+	0	NA	Intergenic	Intergenic	-59963	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
980	chr1	1823601	1824180	+	0	NA	intron (NM_001282539, intron 2 of 10)	AluJb|SINE|Alu	-43859	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
190539	chr5	180683921	180684180	+	0	NA	promoter-TSS (NR_146728)	promoter-TSS (NR_146728)	-46	NR_146728	105377765		NR_146728		LINC02222	-	long intergenic non-protein coding RNA 2222	ncRNA
69825	chr14	99223401	99223900	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	48547	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
176138	chr4	83124621	83124880	+	0	NA	Intergenic	Intergenic	-10021	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
169399	chr3	160567701	160568300	+	0	NA	Intergenic	Intergenic	-2429	NM_002268	3840		NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
228234	chr9	97919621	97920130	+	0	NA	intron (NM_001371657, intron 1 of 5)	intron (NM_001371657, intron 1 of 5)	2306	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
206343	chr7	30332921	30333530	+	0	NA	intron (NM_147128, intron 2 of 4)	AluSx1|SINE|Alu	-36825	NR_002186	222161		NM_152747		DKFZP586I1420	-	uncharacterized protein DKFZp586I1420	pseudo
107473	chr18	47025001	47025200	+	0	NA	intron (NM_001353908, intron 3 of 11)	HSMAR2|DNA|TcMar-Mariner	10517	NM_016427	51224		NM_016427	ENSG00000206181	ELOA2	HsT832|TCEB3B|TCEB3L	elongin A2	protein-coding
229924	chr9	126627101	126627800	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	13522	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
165487	chr3	99843251	99843550	+	0	NA	intron (NM_182909, intron 5 of 5)	intron (NM_182909, intron 5 of 5)	-19535	NR_110821	101929357		NR_110821		HP09053	-	uncharacterized LOC101929357	ncRNA
97697	chr17	44317471	44317830	+	0	NA	3' UTR (NM_006695, exon 11 of 11)	3' UTR (NM_006695, exon 11 of 11)	7173	NR_159404	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
54135	chr12	76534271	76534430	+	0	NA	intron (NM_001319652, intron 3 of 25)	intron (NM_001319652, intron 3 of 25)	25421	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
25086	chr10	3871821	3872380	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	38150	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
29177	chr10	68903701	68903900	+	0	NA	intron (NM_024045, intron 1 of 14)	AluSx|SINE|Alu	2485	NM_024045	79009		NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
43921	chr11	90222321	90223530	+	0	NA	exon (NM_012124, exon 1 of 11).2	exon (NM_012124, exon 1 of 11).2	124	NM_012124	26973		NM_012124	ENSG00000110172	CHORDC1	CHP1	cysteine and histidine rich domain containing 1	protein-coding
236658	chrX	76143051	76143780	+	0	NA	Intergenic	Intergenic	-29514	NM_001300888	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
139995	chr2	230933801	230934200	+	0	NA	Intergenic	Intergenic	-8758	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
144170	chr20	34082851	34083630	+	0	NA	3' UTR (NM_007367, exon 9 of 9)	3' UTR (NM_007367, exon 9 of 9)	29003	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
181144	chr5	38453071	38454280	+	0	NA	intron (NM_182801, intron 3 of 5)	intron (NM_182801, intron 3 of 5)	8129	NM_182801	133584		NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
25273	chr10	6136321	6137300	+	0	NA	Intergenic	Intergenic	-8111	NR_136554	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
154171	chr22	31302621	31303280	+	0	NA	Intergenic	Intergenic	-10416	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
58664	chr12	132530271	132530530	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	24994	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
219777	chr8	81113771	81113930	+	0	NA	Intergenic	Intergenic	-1782	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
37578	chr11	19243151	19243580	+	0	NA	Intergenic	Intergenic	-1710	NM_001256372	79733		NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
23680	chr1	231411771	231411930	+	0	NA	intron (NM_001377261, intron 1 of 3)	AluSx3|SINE|Alu	10437	NM_001377261	54583		NM_022051	ENSG00000135766	EGLN1	C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia inducible factor 1	protein-coding
203000	chr6	163329451	163329550	+	0	NA	Intergenic	Intergenic	-5027	NR_028390	285796		NR_028390	ENSG00000281692	PACRG-AS1	-	PACRG antisense RNA 1	ncRNA
138354	chr2	203935071	203935630	+	0	NA	Intergenic	Intergenic	-1413	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
220131	chr8	94821421	94821730	+	0	NA	Intergenic	MER66B|LTR|ERV1	-1712	NM_017864	55656		NM_017864	ENSG00000164941	INTS8	C8orf52|INT8|NEDCHS	integrator complex subunit 8	protein-coding
123554	chr19	54408551	54408950	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-6714	NM_001005367	57348		NM_020659	ENSG00000167614	TTYH1	-	tweety family member 1	protein-coding
236908	chrX	86148121	86148850	+	0	NA	promoter-TSS (NM_001139514)	promoter-TSS (NM_001139514)	34	NM_053281	117154		NM_053281	ENSG00000126733	DACH2	-	dachshund family transcription factor 2	protein-coding
113501	chr19	10093871	10094500	+	0	NA	TTS (NM_001308277)	TTS (NM_001308277)	7868	NM_001308277	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
216029	chr8	9151401	9152080	+	0	NA	promoter-TSS (NM_001201329).2	promoter-TSS (NM_001201329).2	-201	NM_001201329	79660		NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
201353	chr6	144653701	144654530	+	0	NA	intron (NM_001375323, intron 1 of 24)	intron (NM_001375323, intron 1 of 24)	70967	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
22515	chr1	221808971	221809900	+	0	NA	Intergenic	Intergenic	31231	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
36949	chr11	11028051	11028350	+	0	NA	Intergenic	Intergenic	169983	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
187175	chr5	140642471	140642830	+	0	NA	exon (NM_001300980, exon 6 of 12)	exon (NM_001300980, exon 6 of 12)	3199	NM_018502	55374		NM_018502	ENSG00000113119	TMCO6	PRO1580	transmembrane and coiled-coil domains 6	protein-coding
183926	chr5	87400271	87401230	+	0	NA	intron (NM_001239, intron 6 of 8)	Tigger13a|DNA|TcMar-Tigger	12154	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
95082	chr17	33768021	33768100	+	0	NA	intron (NM_001094, intron 1 of 9)	AluYc|SINE|Alu	-234300	NR_037584	100506677		NR_037584	ENSG00000265544	AA06	AA02|AA04|AA05	uncharacterized LOC100506677	pseudo
50647	chr12	48787171	48787500	+	0	NA	intron (NM_015270, intron 1 of 21)	intron (NM_015270, intron 1 of 21)	1754	NM_015270	112		NM_015270	ENSG00000174233	ADCY6	AC6|LCCS8	adenylate cyclase 6	protein-coding
59558	chr13	27353071	27353480	+	0	NA	Intergenic	Intergenic	-71344	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
63066	chr13	113156121	113156800	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-2188	NM_003891	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
190300	chr5	179598301	179598500	+	0	NA	intron (NR_110560, intron 6 of 8).2	intron (NR_110560, intron 6 of 8).2	5341	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
170957	chr3	194446351	194446450	+	0	NA	intron (NR_164666, intron 14 of 32)	MER6A|DNA|TcMar-Tigger	21839	NM_024524	79572		NM_024524	ENSG00000133657	ATP13A3	AFURS1|PPH5	ATPase 13A3	protein-coding
184873	chr5	112520521	112520780	+	0	NA	Intergenic	L1PBa1|LINE|L1	101067	NR_027706	54508		NM_019033	ENSG00000278921	EPB41L4A-DT	EPB41L4A-AS2	EPB41L4A divergent transcript	ncRNA
153407	chr22	24810101	24810300	+	0	NA	intron (NM_133454, intron 2 of 24)	intron (NM_133454, intron 2 of 24)	3979	NM_133454	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
56576	chr12	117182451	117182750	+	0	NA	intron (NM_015002, intron 3 of 11)	AluSz|SINE|Alu	7870	NM_015002	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
106846	chr18	24045051	24046100	+	0	NA	intron (NM_001135993, intron 1 of 13)	L2b|LINE|L2	-30115	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
65695	chr14	52738551	52739000	+	0	NA	intron (NM_001130701, intron 2 of 11)	MER34|LTR|ERV1	8609	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
122637	chr19	49832001	49832200	+	0	NA	promoter-TSS (NR_106858)	promoter-TSS (NR_106858)	82	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
204548	chr7	4996801	4997200	+	0	NA	non-coding (NR_015449, exon 6 of 6)	non-coding (NR_015449, exon 6 of 6)	23015	NR_023385	441191		NR_015449	ENSG00000196204	RNF216P1	RNF216L|hCG2040556	ring finger protein 216 pseudogene 1	pseudo
85035	chr16	31711251	31711930	+	0	NA	Intergenic	Intergenic	-1639	NM_001130913	124411		NM_001004300	ENSG00000197302	KRBOX5	ZNF720	KRAB box domain containing 5	protein-coding
147227	chr20	57402371	57402750	+	0	NA	intron (NM_001291780, intron 4 of 4)	intron (NM_001291780, intron 4 of 4)	-9504	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
203281	chr6	169803251	169804330	+	0	NA	TTS (NR_026780)	TTS (NR_026780)	-4965	NR_026781	401288		NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
202328	chr6	157379571	157380500	+	0	NA	Intergenic	CpG	-1155	NM_153746	79683		NM_024630	ENSG00000175048	ZDHHC14	NEW1CP	zinc finger DHHC-type palmitoyltransferase 14	protein-coding
116922	chr19	18828621	18828880	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3209	NM_001297549	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
194698	chr6	33694371	33695580	+	0	NA	exon (NM_002224, exon 57 of 58)	exon (NM_002224, exon 57 of 58)	-3153	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
170607	chr3	186967601	186968000	+	0	NA	intron (NM_173216, intron 2 of 7)	intron (NM_173216, intron 2 of 7)	37274	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
239145	chrY	11325071	11325430	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1096340	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
38893	chr11	47399771	47401200	+	0	NA	promoter-TSS (NR_039707)	promoter-TSS (NR_039707)	-485	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
65660	chr14	52457971	52458130	+	0	NA	intron (NM_020784, intron 16 of 20)	Charlie29a|DNA|hAT-Charlie	94455	NM_020784	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
147343	chr20	58233821	58234330	+	0	NA	intron (NR_003505, intron 16 of 16)	intron (NR_003505, intron 16 of 16)	-5422	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
38922	chr11	47443951	47444250	+	0	NA	intron (NM_005055, intron 2 of 7)	L2a|LINE|L2	5036	NM_005055	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
91115	chr17	3684151	3684250	+	0	NA	intron (NM_002561, intron 9 of 11)	intron (NM_002561, intron 9 of 11)	11955	NM_001204519	5026		NM_002561	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X 5	protein-coding
147192	chr20	57090671	57091230	+	0	NA	Intergenic	(CCACAC)n|Simple_repeat|Simple_repeat	-122746	NR_110631	102723590		NR_110631		BMP7-AS1	-	BMP7 antisense RNA 1	ncRNA
82661	chr16	19523641	19525100	+	0	NA	intron (NM_001323572, intron 1 of 13)	intron (NM_001323572, intron 1 of 13)	428	NM_001323572	9738		NM_014711	ENSG00000103540	CCP110	CP110|Cep110	centriolar coiled-coil protein 110	protein-coding
171883	chr4	780151	780250	+	0	NA	TTS (NR_036511)	TTS (NR_036511)	1648	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
231254	chr9	129992971	129993130	+	0	NA	intron (NM_001363755, intron 2 of 15)	AluSz|SINE|Alu	50139	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
222563	chr8	140616671	140617150	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	18723	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
40549	chr11	64320371	64320530	+	0	NA	intron (NM_181651, intron 2 of 4)	L2c|LINE|L2	-1854	NM_001372071	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
2802	chr1	10941101	10941430	+	0	NA	Intergenic	Intergenic	25422	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
69747	chr14	98964021	98964630	+	0	NA	Intergenic	Intergenic	252712	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
108253	chr18	63228751	63229050	+	0	NA	intron (NM_000633, intron 2 of 2)	AluSz6|SINE|Alu	90869	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
199417	chr6	116668121	116669280	+	0	NA	promoter-TSS (NM_145062)	promoter-TSS (NM_145062)	66	NM_145062	221302		NM_145062	ENSG00000153975	ZUP1	C6orf113|DUB|ZUFSP	zinc finger containing ubiquitin peptidase 1	protein-coding
228499	chr9	100093471	100093930	+	0	NA	intron (NM_015051, intron 1 of 11)	L1MC5|LINE|L1	5300	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
167710	chr3	130901451	130901950	+	0	NA	intron (NM_001001487, intron 2 of 28)	intron (NM_001001487, intron 2 of 28)	7150	NM_014382	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
101602	chr17	68107271	68107430	+	0	NA	intron (NR_027418, intron 3 of 5)	intron (NR_027418, intron 3 of 5)	5795	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
11848	chr1	92966101	92966300	+	0	NA	Intergenic	Intergenic	-4678	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
104082	chr17	80252671	80253630	+	0	NA	3' UTR (NM_173626, exon 18 of 18)	3' UTR (NM_173626, exon 18 of 18)	-7702	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
118728	chr19	38260151	38260450	+	0	NA	Intergenic	Intergenic	-3926	NM_033256	94274		NM_033256	ENSG00000167641	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1 regulatory inhibitor subunit 14A	protein-coding
116044	chr19	17206951	17207450	+	0	NA	exon (NM_001130065, exon 35 of 40)	exon (NM_001130065, exon 35 of 40)	-8157	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
147049	chr20	53660931	53661880	+	0	NA	Intergenic	Intergenic	53051	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
194666	chr6	33635751	33636600	+	0	NA	intron (NM_002224, intron 1 of 57)	AluSx1|SINE|Alu	-2430	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
90612	chr17	1636321	1636580	+	0	NA	intron (NM_145350, intron 10 of 10).2	AluSc|SINE|Alu	-7616	NM_152346	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
197619	chr6	82558771	82559030	+	0	NA	Intergenic	L1PA2|LINE|L1	194656	NM_001166392	7162		NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
224267	chr9	6055271	6055580	+	0	NA	Intergenic	Intergenic	-39801	NM_001243203	26953		NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
178813	chr4	153523751	153524500	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	57765	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
180077	chr5	1104501	1105070	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	7278	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
150146	chr21	38678851	38678960	+	0	NA	Intergenic	(AGGGG)n|Simple_repeat|Simple_repeat	-17122	NR_111949	2078		NM_004449	ENSG00000157554	ERG	LMPHM14|erg-3|p55	ETS transcription factor ERG	protein-coding
101952	chr17	74569051	74569350	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1857	NM_001324076	100130520		NM_001324073	ENSG00000284690	CD300H	CD300Hs	CD300H molecule (gene/pseudogene)	protein-coding
11141	chr1	86738801	86739200	+	0	NA	intron (NM_001206652, intron 9 of 10)	L2a|LINE|L2	34424	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
15149	chr1	148901801	148902000	+	0	NA	intron (NM_001195260, intron 2 of 4)	intron (NM_001195260, intron 2 of 4)	12340	NM_001002810	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
14176	chr1	121443271	121443430	+	0	NA	Intergenic	Intergenic	-45445	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
26397	chr10	17003091	17003880	+	0	NA	intron (NM_001081, intron 28 of 66)	intron (NM_001081, intron 28 of 66)	126326	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
210916	chr7	101215571	101215930	+	0	NA	intron (NM_001084, intron 5 of 18)	AluJr|SINE|Alu	1831	NM_001084	8985		NM_001084	ENSG00000106397	PLOD3	LH3	procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	protein-coding
238702	chrX	154084671	154085230	+	0	NA	intron (NM_001316337, intron 2 of 4)	intron (NM_001316337, intron 2 of 4)	12019	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
175790	chr4	77800771	77801780	+	0	NA	intron (NM_001365006, intron 1 of 11)	intron (NM_001365006, intron 1 of 11)	17789	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
209641	chr7	77757571	77758230	+	0	NA	intron (NM_198467, intron 3 of 7)	MLT1H2|LTR|ERVL-MaLR	40534	NM_032936	85025		NM_032936	ENSG00000135211	TMEM60	C7orf35|DC32	transmembrane protein 60	protein-coding
89019	chr16	88193851	88194260	+	0	NA	promoter-TSS (NR_110944)	promoter-TSS (NR_110944)	-226	NR_110944	101928880		NR_110944	ENSG00000260420	LINC02182	LA16c-444G7.2	long intergenic non-protein coding RNA 2182	ncRNA
196463	chr6	43519151	43519450	+	0	NA	intron (NM_203290, intron 2 of 8)	intron (NM_203290, intron 2 of 8)	2211	NM_203290	9533		NM_004875	ENSG00000171453	POLR1C	AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3	RNA polymerase I and III subunit C	protein-coding
134987	chr2	152692671	152693400	+	0	NA	intron (NM_001365600, intron 4 of 25)	intron (NM_001365600, intron 4 of 25)	24426	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
124064	chr19	55601551	55601930	+	0	NA	intron (NM_153219, intron 1 of 1)	intron (NM_153219, intron 1 of 1)	1452	NM_153219	147807		NM_153219	ENSG00000171443	ZNF524	-	zinc finger protein 524	protein-coding
167567	chr3	129425401	129425800	+	0	NA	intron (NM_207307, intron 1 of 8)	L2b|LINE|L2	3036	NM_207307	90288		NM_207307	ENSG00000172771	EFCAB12	C3orf25	EF-hand calcium binding domain 12	protein-coding
204989	chr7	6430271	6430600	+	0	NA	intron (NM_001142936, intron 4 of 12)	intron (NM_001142936, intron 4 of 12)	17519	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
158376	chr22	50481051	50482700	+	0	NA	exon (NM_001253845, exon 2 of 3)	exon (NM_001253845, exon 2 of 3)	332	NM_001253845	79924		NM_024866	ENSG00000128165	ADM2	AM2|dJ579N16.4	adrenomedullin 2	protein-coding
28253	chr10	45596251	45596830	+	0	NA	Intergenic	MIRb|SINE|MIR	-1634	NM_145021	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
169480	chr3	169665771	169665930	+	0	NA	Intergenic	Intergenic	-2138	NM_001366473	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
197787	chr6	87678571	87679430	+	0	NA	intron (NM_018064, intron 2 of 4)	AluSp|SINE|Alu	23233	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
99131	chr17	49257301	49257730	+	0	NA	intron (NR_034161, intron 2 of 2)	L2c|LINE|L2	9272	NR_034161	124871		NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	ncRNA
215558	chr7	158807651	158808450	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	21459	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
16535	chr1	154948701	154949100	+	0	NA	intron (NM_001317734, intron 4 of 9)	L2b|LINE|L2	-6242	NM_001323012	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
216323	chr8	12837701	12838100	+	0	NA	Intergenic	MER66B|LTR|ERV1	-26422	NR_015383	340357		NR_015383	ENSG00000254813	LINC03019	-	long intergenic non-protein coding RNA 3019	ncRNA
201059	chr6	142474721	142475050	+	0	NA	Intergenic	Intergenic	162951	NR_027311	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
131057	chr2	88601201	88601650	+	0	NA	intron (NM_004836, intron 2 of 16)	MER58A|DNA|hAT-Charlie	23504	NM_001313915	9451		NM_004836	ENSG00000172071	EIF2AK3	PEK|PERK|WRS	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding
177233	chr4	108611501	108611700	+	0	NA	intron (NR_026968, intron 1 of 3)	intron (NR_026968, intron 1 of 3)	8857	NR_026968	285456		NM_182591	ENSG00000234492	RPL34-DT	RPL34-AS1	RPL34 divergent transcript	ncRNA
30707	chr10	80599401	80599680	+	0	NA	intron (NM_207372, intron 4 of 6)	intron (NM_207372, intron 4 of 6)	-50257	NR_155749	105378386		NR_155749	ENSG00000231082	LINC02655	-	long intergenic non-protein coding RNA 2655	ncRNA
20616	chr1	198959051	198959530	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-21861	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
160331	chr3	27672651	27672750	+	0	NA	Intergenic	AluYc|SINE|Alu	49623	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
142147	chr20	2755571	2755730	+	0	NA	exon (NM_001110514, exon 16 of 18)	exon (NM_001110514, exon 16 of 18)	44977	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
99838	chr17	55344001	55344800	+	0	NA	Intergenic	Charlie24|DNA|hAT-Charlie	77435	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
160004	chr3	18382821	18383280	+	0	NA	intron (NM_001322873, intron 8 of 10)	intron (NM_001322873, intron 8 of 10)	42289	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
45763	chr11	119240921	119241400	+	0	NA	intron (NM_005188, intron 2 of 15)	intron (NM_005188, intron 2 of 15)	34821	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
103311	chr17	77887481	77888480	+	0	NA	Intergenic	CpG	-3893	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
132512	chr2	106093901	106095080	+	0	NA	intron (NM_001377504, intron 12 of 12)	intron (NM_001377504, intron 12 of 12)	28802	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
199591	chr6	119139151	119139450	+	0	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	9893	NM_001288576	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
44488	chr11	105077371	105077530	+	0	NA	Intergenic	LTR8|LTR|ERV1	-5920	NR_131905	440067		NR_131905		CASP1P2	-	caspase 1 pseudogene 2	pseudo
189255	chr5	172043271	172043430	+	0	NA	3' UTR (NM_005990, exon 19 of 19)	3' UTR (NM_005990, exon 19 of 19)	-36712	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
98605	chr17	47749421	47749850	+	0	NA	Intergenic	AluJr|SINE|Alu	16399	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
62442	chr13	99327121	99327380	+	0	NA	intron (NR_026644, intron 6 of 8)	intron (NR_026644, intron 6 of 8)	-19851	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
216247	chr8	12223801	12224230	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-29882	NR_148876	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
175461	chr4	72302951	72303300	+	0	NA	intron (NM_014243, intron 17 of 21)	LTR55|LTR|ERVL?	263993	NM_053036	10886		NM_004885	ENSG00000056291	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
236371	chrX	70930971	70931330	+	0	NA	promoter-TSS (NM_001048164)	promoter-TSS (NM_001048164)	-54	NM_032803	84889		NM_032803	ENSG00000165349	SLC7A3	ATRC3|CAT-3|CAT3	solute carrier family 7 member 3	protein-coding
137441	chr2	196932021	196932580	+	0	NA	Intergenic	L1MC4a|LINE|L1	-5593	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
164339	chr3	58005751	58006130	+	0	NA	Intergenic	Intergenic	-2482	NM_001164317	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
227664	chr9	92976351	92977800	+	0	NA	intron (NM_001369951, intron 3 of 17)	intron (NM_001369951, intron 3 of 17)	2606	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
173257	chr4	7037201	7038130	+	0	NA	intron (NR_033828, intron 2 of 3)	L2b|LINE|L2	5336	NM_153376	257236		NM_153376	ENSG00000173013	CFAP184	CCDC96	cilia and flagella associated protein 184	protein-coding
145248	chr20	38948151	38948450	+	0	NA	intron (NM_030919, intron 3 of 3)	intron (NM_030919, intron 3 of 3)	-14044	NM_001190809	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
129872	chr2	73085501	73086150	+	0	NA	intron (NM_001371272, intron 3 of 5)	intron (NM_001371272, intron 3 of 5)	-14113	NM_001371740	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
152175	chr22	20090151	20090600	+	0	NA	intron (NM_022720, intron 5 of 13)	intron (NM_022720, intron 5 of 13)	4317	NR_031706	100302197		NR_031706	ENSG00000284464	MIR1306	MIRN1306|hsa-mir-1306|mir-1306	microRNA 1306	ncRNA
180226	chr5	1536271	1537830	+	0	NA	Intergenic	Intergenic	-13090	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
172369	chr4	1749621	1750030	+	0	NA	Intergenic	Intergenic	28304	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
192587	chr6	25964621	25965680	+	0	NA	intron (NM_006355, intron 2 of 7)	intron (NM_006355, intron 2 of 7)	2348	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
113386	chr19	9139351	9139450	+	0	NA	promoter-TSS (NM_020933)	promoter-TSS (NM_020933)	-997	NM_020933	57693		NM_020933	ENSG00000130803	ZNF317	-	zinc finger protein 317	protein-coding
162767	chr3	49069251	49069350	+	0	NA	intron (NM_001320580, intron 3 of 10)	AluSg7|SINE|Alu	24332	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
28773	chr10	62048981	62049550	+	0	NA	promoter-TSS (NM_001244638)	promoter-TSS (NM_001244638)	-92	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
214153	chr7	144369271	144369450	+	0	NA	intron (NM_005435, intron 5 of 14)	intron (NM_005435, intron 5 of 14)	5727	NR_033942	728377		NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor 34, pseudogene	pseudo
52563	chr12	56155971	56156530	+	0	NA	intron (NM_001199629, intron 5 of 7)	AluSx|SINE|Alu	-2109	NM_021019	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
174737	chr4	43449901	43450300	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	42443	NR_146993	105374436		NR_146993	ENSG00000248143	LINC02383	-	long intergenic non-protein coding RNA 2383	ncRNA
217961	chr8	38271551	38271850	+	0	NA	3' UTR (NM_023034, exon 24 of 24)	3' UTR (NM_023034, exon 24 of 24)	-2468	NM_001354454	84513		NM_032483	ENSG00000147535	PLPP5	DPPL1|HTPAP|PPAPDC1B	phospholipid phosphatase 5	protein-coding
194283	chr6	32658371	32658930	+	0	NA	TTS (NM_002123)	TTS (NM_002123)	-1230	NR_133907	106480429		NR_133907	ENSG00000223534	HLA-DQB1-AS1	-	HLA-DQB1 antisense RNA 1	ncRNA
103817	chr17	79098471	79098830	+	0	NA	intron (NM_001082575, intron 9 of 14)	intron (NM_001082575, intron 9 of 14)	23826	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
146557	chr20	49993071	49993230	+	0	NA	Intergenic	AluSp|SINE|Alu	10170	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
233819	chrX	1476671	1477100	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-23123	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
200981	chr6	139371151	139371250	+	0	NA	TTS (NM_006079)	TTS (NM_006079)	3013	NM_001168389	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
191135	chr6	4131951	4132250	+	0	NA	intron (NM_206836, intron 2 of 9)	MER77B|LTR|ERVL	3368	NM_001166010	10455		NM_006117	ENSG00000198721	ECI2	ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3	enoyl-CoA delta isomerase 2	protein-coding
90957	chr17	2675121	2675780	+	0	NA	intron (NM_000430, intron 8 of 10)	intron (NM_000430, intron 8 of 10)	17469	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
12824	chr1	110011471	110011950	+	0	NA	intron (NM_001242673, intron 3 of 16)	intron (NM_001242673, intron 3 of 16)	7762	NM_001242675	10768		NM_006621	ENSG00000168710	AHCYL1	DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA	adenosylhomocysteinase like 1	protein-coding
106879	chr18	24396021	24396450	+	0	NA	intron (NM_080597, intron 1 of 27)	AluSg|SINE|Alu	1589	NM_080597	114876		NM_018030	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein like 1A	protein-coding
137712	chr2	197517771	197519700	+	0	NA	intron (NM_001204094, intron 1 of 7)	AluSx1|SINE|Alu	2437	NM_001204094	25843		NM_015387	ENSG00000115540	MOB4	2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3	MOB family member 4, phocein	protein-coding
42007	chr11	67403401	67404400	+	0	NA	promoter-TSS (NM_198517)	promoter-TSS (NM_198517)	-13	NM_001256508	374403		NM_198517	ENSG00000175463	TBC1D10C	CARABIN|EPI64C	TBC1 domain family member 10C	protein-coding
82879	chr16	21551821	21552080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-31506	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
236877	chrX	81841241	81841550	+	0	NA	Intergenic	L1HS|LINE|L1	639293	NM_003022	6451		NM_003022	ENSG00000131171	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate rich protein like	protein-coding
198052	chr6	90198851	90199350	+	0	NA	intron (NM_021813, intron 4 of 8)	THE1B|LTR|ERVL-MaLR	97743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
194912	chr6	34761221	34761480	+	0	NA	intron (NM_003093, intron 2 of 5)	AluSx|SINE|Alu	3845	NM_003093	6631		NM_003093	ENSG00000124562	SNRPC	U1C|Yhc1	small nuclear ribonucleoprotein polypeptide C	protein-coding
76561	chr15	75215271	75215930	+	0	NA	Intergenic	Intergenic	13718	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
26199	chr10	14554421	14555150	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	1395	NM_001320738	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
156628	chr22	41597021	41597500	+	0	NA	TTS (NM_015704)	TTS (NM_015704)	-7420	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
21970	chr1	208732571	208732730	+	0	NA	intron (NR_146914, intron 3 of 3)	intron (NR_146914, intron 3 of 3)	3962	NR_146914	105372893		NR_146914	ENSG00000232812	LINC01717	-	long intergenic non-protein coding RNA 1717	ncRNA
186382	chr5	135028071	135028430	+	0	NA	3' UTR (NM_002653, exon 3 of 3)	3' UTR (NM_002653, exon 3 of 3)	-5024	NR_161235	100996485		NR_161235	ENSG00000224186	PITX1-AS1	C5orf66	PITX1 antisense RNA 1	ncRNA
160837	chr3	33066121	33066380	+	0	NA	intron (NM_001135602, intron 2 of 12)	MSTC|LTR|ERVL-MaLR	30582	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
226487	chr9	71759701	71759900	+	0	NA	intron (NM_001135820, intron 1 of 22)	LTR29|LTR|ERV1	8713	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
16114	chr1	153639501	153639900	+	0	NA	intron (NM_001244664, intron 3 of 3)	intron (NM_001244664, intron 3 of 3)	-5339	NM_001024210	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
162510	chr3	48584801	48585200	+	0	NA	intron (NM_000094, intron 33 of 118)	intron (NM_000094, intron 33 of 118)	-6023	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
15347	chr1	149929351	149929650	+	0	NA	intron (NM_001145862, intron 16 of 16)	intron (NM_001145862, intron 16 of 16)	-1697	NM_005850	10262		NM_005850	ENSG00000143368	SF3B4	AFD1|Hsh49|SAP49|SF3b49	splicing factor 3b subunit 4	protein-coding
160496	chr3	30622651	30622950	+	0	NA	intron (NM_003242, intron 1 of 6)	AluSg|SINE|Alu	16199	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
207682	chr7	45155671	45156200	+	0	NA	Intergenic	Intergenic	-1856	NM_005856	10268		NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
87903	chr16	78896201	78897000	+	0	NA	intron (NM_016373, intron 8 of 8)	MIRb|SINE|MIR	704137	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
77538	chr15	84734021	84736000	+	0	NA	Intergenic	Intergenic	-13582	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
210662	chr7	100491821	100492080	+	0	NA	intron (NM_173564, intron 6 of 6)	AluSx4|SINE|Alu	8023	NM_173564	222950		NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
90435	chr17	1358401	1358800	+	0	NA	intron (NR_024058, intron 5 of 6)	AluSx|SINE|Alu	41622	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
227763	chr9	93111371	93111900	+	0	NA	non-coding (NR_134465, exon 3 of 4)	non-coding (NR_134465, exon 3 of 4)	15418	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
176894	chr4	102790321	102790900	+	0	NA	intron (NR_125932, intron 4 of 4)	L1MB5|LINE|L1	13573	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
205392	chr7	16079901	16080100	+	0	NA	Intergenic	Intergenic	-130486	NR_038946	100506025		NR_038946	ENSG00000229688	CRPPA-AS1	ISPD-AS1	CRPPA antisense RNA 1	ncRNA
51854	chr12	53472651	53473500	+	0	NA	intron (NM_031989, intron 14 of 14)	intron (NM_031989, intron 14 of 14)	8607	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
76292	chr15	74223551	74224050	+	0	NA	Intergenic	Intergenic	-12526	NM_025055	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
34684	chr10	133371521	133371780	+	0	NA	promoter-TSS (NR_037509)	promoter-TSS (NR_037509)	13	NR_037509	100500911		NR_037509	ENSG00000265395	MIR3944	-	microRNA 3944	ncRNA
77769	chr15	85795971	85796530	+	0	NA	Intergenic	MIRb|SINE|MIR	-1325	NM_022480	64410		NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch like family member 25	protein-coding
9946	chr1	54604401	54604830	+	0	NA	intron (NM_015547, intron 12 of 16)	intron (NM_015547, intron 12 of 16)	18910	NM_176782	338094		NM_176782	ENSG00000162391	FAM151A	C1orf179	family with sequence similarity 151 member A	protein-coding
139482	chr2	224442401	224443000	+	0	NA	Intergenic	CpG	-40593	NM_001122779	79843		NM_024785	ENSG00000124019	FAM124B	-	family with sequence similarity 124 member B	protein-coding
94057	chr17	27360521	27360930	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-57280	NR_033892	440419		NR_033892	ENSG00000290422	TBC1D3P5	-	TBC1 domain family member 3 pseudogene 5	pseudo
158043	chr22	49938521	49939230	+	0	NA	Intergenic	Intergenic	20241	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
17067	chr1	156110771	156111130	+	0	NA	intron (NM_001282625, intron 3 of 12)	AluSx1|SINE|Alu	-3761	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
217855	chr8	37796521	37799100	+	0	NA	intron (NM_032777, intron 1 of 18)	CpG	927	NM_032777	25960		NM_032777	ENSG00000020181	ADGRA2	GPR124|TEM5	adhesion G protein-coupled receptor A2	protein-coding
80482	chr16	2706001	2706200	+	0	NA	intron (NM_018992, intron 5 of 5)	intron (NM_018992, intron 5 of 5)	14124	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
116450	chr19	18057021	18057280	+	0	NA	Intergenic	AluJb|SINE|Alu	29784	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
99720	chr17	50902451	50902750	+	0	NA	Intergenic	Intergenic	-34622	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
160468	chr3	30456171	30456530	+	0	NA	Intergenic	Intergenic	-62518	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
26027	chr10	12347271	12347650	+	0	NA	Intergenic	AluSx|SINE|Alu	-2087	NM_020397	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
213216	chr7	133081471	133082800	+	0	NA	promoter-TSS (NR_133671)	promoter-TSS (NR_133671)	23	NR_133671	54927		NM_017812	ENSG00000106554	CHCHD3	MICOS19|MINOS3|Mic19|PPP1R22	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
144723	chr20	36570701	36571100	+	0	NA	intron (NR_109939, intron 2 of 4)	intron (NR_109939, intron 2 of 4)	2375	NR_109939	101926987		NR_109939	ENSG00000232907	DLGAP4-AS1	CCAT7	DLGAP4 antisense RNA 1	ncRNA
175338	chr4	68434921	68435280	+	0	NA	Intergenic	Intergenic	-12363	NM_014058	28983		NM_014058	ENSG00000087128	TMPRSS11E	DESC1|TMPRSS11E2	transmembrane serine protease 11E	protein-coding
19052	chr1	169710471	169710630	+	0	NA	intron (NM_000655, intron 1 of 8)	intron (NM_000655, intron 1 of 8)	1070	NM_000655	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
205143	chr7	7184151	7184250	+	0	NA	intron (NM_020156, intron 1 of 3)	intron (NM_020156, intron 1 of 3)	1656	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
22134	chr1	211925001	211925200	+	0	NA	Intergenic	Intergenic	94139	NR_135820	102723727		NR_135818	ENSG00000229258	LPGAT1-AS1	-	LPGAT1 antisense RNA 1	ncRNA
13623	chr1	116407821	116408280	+	0	NA	intron (NR_024125, intron 1 of 2)	intron (NR_024125, intron 1 of 2)	10509	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
121015	chr19	45786701	45787400	+	0	NA	intron (NM_004943, intron 2 of 4)	intron (NM_004943, intron 2 of 4)	-4560	NM_001081560	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
68143	chr14	75540971	75541200	+	0	NA	intron (NM_006399, intron 2 of 2)	AluSx1|SINE|Alu	18616	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
81767	chr16	11502151	11502250	+	0	NA	intron (NM_001370704, intron 8 of 66)	intron (NM_001370704, intron 8 of 66)	25047	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
101420	chr17	67397821	67398080	+	0	NA	intron (NM_181671, intron 1 of 9)	AluY|SINE|Alu	20669	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
49696	chr12	30850371	30850530	+	0	NA	Intergenic	AluSx1|SINE|Alu	54769	NR_040245	100287314		NR_040245		LINC00941	lncIAPF|lncRNA-MUF	long intergenic non-protein coding RNA 941	ncRNA
93363	chr17	18238251	18238350	+	0	NA	intron (NM_004140, intron 15 of 22)	intron (NM_004140, intron 15 of 22)	12665	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
151224	chr21	45255221	45256130	+	0	NA	intron (NR_135279, intron 2 of 2)	intron (NR_135279, intron 2 of 2)	21335	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
54514	chr12	92107601	92108430	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	33698	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
18000	chr1	160539971	160540850	+	0	NA	TTS (NM_001184879)	TTS (NM_001184879)	-17155	NM_001184714	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
158349	chr22	50458701	50458930	+	0	NA	intron (NM_002972, intron 28 of 40)	intron (NM_002972, intron 28 of 40)	16220	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
128085	chr2	47890601	47891400	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluJr|SINE|Alu	-2281	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
185354	chr5	127072901	127073900	+	0	NA	promoter-TSS (NM_001164479)	promoter-TSS (NM_001164479)	92	NM_001164478	401207		NM_001164478	ENSG00000164241	C5orf63	YDR286C	chromosome 5 open reading frame 63	protein-coding
124408	chr19	58436871	58437230	+	0	NA	exon (NM_003433, exon 2 of 3)	exon (NM_003433, exon 2 of 3)	3103	NM_003433	7691		NM_003433	ENSG00000131849	ZNF132	pHZ-12	zinc finger protein 132	protein-coding
19544	chr1	178774201	178774400	+	0	NA	intron (NM_001286247, intron 1 of 18)	intron (NM_001286247, intron 1 of 18)	49056	NM_152663	55103		NM_018037	ENSG00000116191	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
35914	chr11	2423221	2423480	+	0	NA	promoter-TSS (NM_014555)	promoter-TSS (NM_014555)	-305	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
48263	chr12	8625351	8625950	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-12791	NM_001330343	57379		NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HEL-S-284|HIGM2	activation induced cytidine deaminase	protein-coding
144624	chr20	35883851	35884830	+	0	NA	intron (NM_016436, intron 9 of 17)	intron (NM_016436, intron 9 of 17)	70162	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
2839	chr1	11100871	11101030	+	0	NA	intron (NR_135063, intron 1 of 1)	AluSx3|SINE|Alu	931	NR_135063	105376736		NR_135061	ENSG00000230337	EXOSC10-AS1	-	EXOSC10 antisense RNA 1	ncRNA
170365	chr3	184604021	184604880	+	0	NA	Intergenic	CpG	42665	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
73245	chr15	41777101	41777700	+	0	NA	intron (NR_049762, intron 2 of 28)	L2c|LINE|L2	2916	NR_049762	23005		NM_014994	ENSG00000137802	MAPKBP1	JNKBP-1|JNKBP1|NPHP20	mitogen-activated protein kinase binding protein 1	protein-coding
150179	chr21	39209751	39210500	+	0	NA	exon (NM_018963, exon 36 of 42)	exon (NM_018963, exon 36 of 42)	-26611	NM_203433	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
172063	chr4	1025151	1025530	+	0	NA	exon (NM_021923, exon 6 of 6)	exon (NM_021923, exon 6 of 6)	12876	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
8798	chr1	42930601	42931500	+	0	NA	exon (NM_006516, exon 3 of 10)	exon (NM_006516, exon 3 of 10)	27818	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
224139	chr9	4749821	4750500	+	0	NA	Intergenic	L1M8|LINE|L1	-8117	NM_001199853	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
165435	chr3	98534171	98534330	+	0	NA	3' UTR (NM_005290, exon 1 of 1)	3' UTR (NM_005290, exon 1 of 1)	2272	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
91534	chr17	4994901	4995100	+	0	NA	intron (NM_001167985, intron 2 of 7)	AluSx|SINE|Alu	2610	NM_001167986	388324		NM_213726	ENSG00000196388	INCA1	HSD45	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding
61870	chr13	77026801	77027750	+	0	NA	promoter-TSS (NM_012158)	promoter-TSS (NM_012158)	-116	NM_012158	26224		NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A|IDDSFAS	F-box and leucine rich repeat protein 3	protein-coding
164033	chr3	53259771	53259930	+	0	NA	Intergenic	L2b|LINE|L2	-3736	NM_001258028	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
67311	chr14	69613571	69614580	+	0	NA	intron (NM_014734, intron 1 of 5)	AluSx|SINE|Alu	2479	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
147076	chr20	53767571	53767750	+	0	NA	Intergenic	Intergenic	108049	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
47172	chr12	783271	784130	+	0	NA	intron (NM_018979, intron 1 of 27)	AluJo|SINE|Alu	30777	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
105993	chr18	7566801	7567480	+	0	NA	promoter-TSS (NM_001105244)	promoter-TSS (NM_001105244)	-176	NM_002845	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
41580	chr11	66338971	66339850	+	0	NA	intron (NM_015399, intron 7 of 9)	intron (NM_015399, intron 7 of 9)	-2636	NM_001363559	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
72459	chr15	32373471	32373950	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	-19843	NR_135833	101928042		NR_135833		ARHGAP11A-DT	-	ARHGAP11A divergent transcript	ncRNA
25753	chr10	9331471	9331830	+	0	NA	Intergenic	Intergenic	-36057	NR_120635	101928272		NR_120635		LOC101928272	-	uncharacterized LOC101928272	ncRNA
29379	chr10	70052571	70053080	+	0	NA	promoter-TSS (NM_018649)	promoter-TSS (NM_018649)	-21	NM_018649	55506		NM_018649	ENSG00000099284	MACROH2A2	H2AFY2	macroH2A.2 histone	protein-coding
192806	chr6	26598501	26599050	+	0	NA	3' UTR (NM_013375, exon 3 of 3)	3' UTR (NM_013375, exon 3 of 3)	1822	NM_013375	29777		NM_013375	ENSG00000146109	ABT1	Esf2|hABT1	activator of basal transcription 1	protein-coding
33593	chr10	119516171	119517300	+	0	NA	intron (NM_002925, intron 3 of 4)	intron (NM_002925, intron 3 of 4)	19798	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
216268	chr8	12461801	12462200	+	0	NA	intron (NR_040092, intron 4 of 5)	HERVK-int|LTR|ERVK	24987	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
143451	chr20	30374821	30375680	+	0	NA	Intergenic	Intergenic	-1914	NR_003579	284802		NM_207350		FRG1BP	C20orf80|FRG1B|bA348I14.2	FSHD region gene 1 family member B, pseudogene	pseudo
170650	chr3	187112921	187113600	+	0	NA	Intergenic	Intergenic	26236	NM_052969	116832		NM_052969	ENSG00000163923	RPL39L	L39-2|RPL39L1	ribosomal protein L39 like	protein-coding
11647	chr1	91791551	91792400	+	0	NA	intron (NR_036634, intron 4 of 17)	intron (NR_036634, intron 4 of 17)	94176	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
21734	chr1	206798951	206799050	+	0	NA	exon (NM_153758, exon 2 of 7)	exon (NM_153758, exon 2 of 7)	-26506	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
233952	chrX	2607551	2607650	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-1591	NR_106737	102464837		NR_106737	ENSG00000277120	MIR6089	MIR6089-1|MIR6089-2|hsa-mir-6089-1|hsa-mir-6089-2	microRNA 6089	ncRNA
157095	chr22	42627701	42627900	+	0	NA	intron (NM_001129819, intron 5 of 8)	intron (NM_001129819, intron 5 of 8)	12555	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
117015	chr19	18912771	18913330	+	0	NA	intron (NM_007263, intron 1 of 9)	intron (NM_007263, intron 1 of 9)	6337	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
142168	chr20	2845051	2845150	+	0	NA	intron (NM_022575, intron 1 of 23)	L2c|LINE|L2	-3949	NM_001271168	64773		NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
77947	chr15	89348951	89349250	+	0	NA	Intergenic	Intergenic	-12479	NR_133001	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
122930	chr19	50669351	50669800	+	0	NA	intron (NM_016148, intron 22 of 23)	MER91A|DNA|hAT-Tip100	20130	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
106436	chr18	13609051	13609750	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-1714	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
184091	chr5	93601201	93601400	+	0	NA	Intergenic	Intergenic	18078	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
89340	chr16	88754601	88755100	+	0	NA	intron (NM_001142864, intron 1 of 50)	CpG	12083	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
71894	chr15	22520971	22521130	+	0	NA	intron (NR_002824, intron 3 of 34).2	(CA)n|Simple_repeat|Simple_repeat	26199	NM_004667	8924		NM_004667	ENSG00000128731	HERC2	D15F37S1|MRT38|SHEP1|jdf2|p528	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding
56252	chr12	111998821	111999080	+	0	NA	intron (NM_138341, intron 2 of 9)	intron (NM_138341, intron 2 of 9)	14215	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
194859	chr6	34525871	34526030	+	0	NA	intron (NM_001199583, intron 1 of 9)	intron (NM_001199583, intron 1 of 9)	11078	NM_001199583	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
173814	chr4	17824021	17824530	+	0	NA	intron (NR_073124, intron 8 of 19)	intron (NR_073124, intron 8 of 19)	13296	NM_022346	64151		NM_022346	ENSG00000109805	NCAPG	CAPG|CHCG|NY-MEL-3|YCG1	non-SMC condensin I complex subunit G	protein-coding
49859	chr12	35405151	35405250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1382704	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
93001	chr17	17181721	17183050	+	0	NA	intron (NM_201274, intron 23 of 23)	L4_A_Mam|LINE|RTE-X	23948	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
62940	chr13	111304251	111304550	+	0	NA	3' UTR (NM_001354048, exon 22 of 22)	3' UTR (NM_001354048, exon 22 of 22)	-11785	NM_001303133	121793		NM_152324	ENSG00000153495	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
104734	chr17	81662021	81662280	+	0	NA	intron (NM_001365724, intron 1 of 3)	MER4B|LTR|ERV1	977	NM_001365724	5148		NM_002602	ENSG00000185527	PDE6G	PDEG|RP57	phosphodiesterase 6G	protein-coding
56434	chr12	113422071	113422430	+	0	NA	promoter-TSS (NM_001304993)	promoter-TSS (NM_001304993)	-130	NM_001304993	113675		NM_138432	ENSG00000139410	SDSL	SDH 2|SDHL|SDS-RS1|TDH|cSDH	serine dehydratase like	protein-coding
190357	chr5	179703971	179704130	+	0	NA	intron (NM_001363993, intron 2 of 15)	intron (NM_001363993, intron 2 of 15)	5083	NM_001746	821		NM_001746	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
170900	chr3	193869651	193869950	+	0	NA	Intergenic	CpG	-25791	NR_146718	105374285		NR_146718		LINC02038	-	long intergenic non-protein coding RNA 2038	ncRNA
95553	chr17	36727221	36727480	+	0	NA	Intergenic	Intergenic	125767	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
135372	chr2	160457621	160457950	+	0	NA	intron (NM_016836, intron 1 of 13)	Charlie14a|DNA|hAT-Charlie	36022	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
233602	chrX	337551	337650	+	0	NA	intron (NM_013239, intron 12 of 12)	CpG	18455	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
82167	chr16	14918071	14918750	+	0	NA	intron (NR_146231, intron 4 of 38)	intron (NR_146231, intron 4 of 38)	6648	NR_146231	109951030		NR_146231		PKD1P3-NPIPA1	-	PKD1P3-NPIPA1 readthrough	pseudo
232364	chr9	135775221	135775480	+	0	NA	exon (NM_001272003, exon 19 of 31)	exon (NM_001272003, exon 19 of 31)	73165	NM_020822	57582		NM_020822	ENSG00000107147	KCNT1	DEE14|EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
167548	chr3	129340751	129340850	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-24514	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
153450	chr22	25164901	25165100	+	0	NA	intron (NM_001145206, intron 4 of 10)	(GT)n|Simple_repeat|Simple_repeat	-34858	NM_004076	1417		NM_004076	ENSG00000100053	CRYBB3	CATCN2|CRYB3|CTRCT22	crystallin beta B3	protein-coding
103254	chr17	77571551	77572330	+	0	NA	Intergenic	Intergenic	24999	NR_040050	100507351		NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
125649	chr2	19901201	19902780	+	0	NA	promoter-TSS (NM_001008237)	promoter-TSS (NM_001008237)	-7	NM_001008237	130502		NM_001008237	ENSG00000183891	TTC32	-	tetratricopeptide repeat domain 32	protein-coding
118539	chr19	36111201	36111400	+	0	NA	promoter-TSS (NM_001302757)	promoter-TSS (NM_001302757)	97	NM_001302757	728361		NM_001270948	ENSG00000105261	OVOL3	HOVO3	ovo like zinc finger 3	protein-coding
3876	chr1	16985901	16986300	+	0	NA	exon (NM_001141974, exon 27 of 27)	exon (NM_001141974, exon 27 of 27)	-4514	NM_001135247	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
231311	chr9	130066921	130067180	+	0	NA	intron (NM_001136557, intron 1 of 19)	intron (NM_001136557, intron 1 of 19)	13144	NM_001136557	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
29520	chr10	70785221	70785580	+	0	NA	promoter-TSS (NM_001318243)	promoter-TSS (NM_001318243)	-23	NR_134531	219793		NM_152710	ENSG00000166220	TBATA	C10orf27|SPATIAL	thymus, brain and testes associated	protein-coding
224248	chr9	5879571	5879730	+	0	NA	Intergenic	Intergenic	-11239	NM_005511	2315		NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
156386	chr22	41101801	41102000	+	0	NA	intron (NM_001362843, intron 1 of 29)	intron (NM_001362843, intron 1 of 29)	9308	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
61025	chr13	48182321	48182650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-50721	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
203057	chr6	166235121	166236030	+	0	NA	Intergenic	Intergenic	-1394	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
133059	chr2	112273301	112273930	+	0	NA	Intergenic	Intergenic	-1982	NM_198581	376940		NM_198581	ENSG00000188177	ZC3H6	ZC3HDC6	zinc finger CCCH-type containing 6	protein-coding
150222	chr21	41113051	41113550	+	0	NA	Intergenic	Intergenic	34764	NR_024100	284835		NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
106897	chr18	24660051	24660510	+	0	NA	intron (NR_040033, intron 2 of 2)	intron (NR_040033, intron 2 of 2)	32098	NR_040033	729950		NR_040033	ENSG00000265485	LINC01915	-	long intergenic non-protein coding RNA 1915	ncRNA
238381	chrX	149946801	149947000	+	0	NA	non-coding (NR_027456, exon 6 of 12)	non-coding (NR_027456, exon 6 of 12)	8352	NR_027456	100272228		NR_027456	ENSG00000235703	EOLA2-DT	LINC00894	EOLA2 divergent transcript	ncRNA
223581	chr8	144274001	144274200	+	0	NA	intron (NM_015201, intron 3 of 15)	intron (NM_015201, intron 3 of 15)	7647	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
236899	chrX	85275651	85275750	+	0	NA	Intergenic	Intergenic	31709	NM_001375433	7552		NM_021998	ENSG00000147180	ZNF711	CMPX1|MRX65|MRX97|XLID97|ZNF4|ZNF5|ZNF6|Zfp711|dJ75N13.1	zinc finger protein 711	protein-coding
33469	chr10	119066501	119067030	+	0	NA	intron (NM_003750, intron 6 of 21)	MIR|SINE|MIR	-6627	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
99637	chr17	50614471	50614930	+	0	NA	intron (NR_046054, intron 26 of 35)	intron (NR_046054, intron 26 of 35)	-20181	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
113628	chr19	10326071	10326430	+	0	NA	intron (NM_133452, intron 3 of 12)	AluSx1|SINE|Alu	7279	NM_133452	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
43174	chr11	75385571	75385730	+	0	NA	Intergenic	AluSx|SINE|Alu	-13841	NM_001260507	6188		NM_001005	ENSG00000149273	RPS3	S3|uS3	ribosomal protein S3	protein-coding
88758	chr16	86577071	86577230	+	0	NA	Intergenic	Intergenic	-1399	NM_005250	2300		NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7|OTSC11	forkhead box L1	protein-coding
104633	chr17	81438451	81439280	+	0	NA	intron (NM_001377448, intron 4 of 27)	intron (NM_001377448, intron 4 of 27)	12323	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
133353	chr2	113978171	113978700	+	0	NA	non-coding (NR_034130, exon 1 of 1)	non-coding (NR_034130, exon 1 of 1)	-1134	NR_148509	440900		NR_034128	ENSG00000234199	LINC01191	VIN|lnc-ACTR3	long intergenic non-protein coding RNA 1191	ncRNA
762	chr1	1509351	1509930	+	0	NA	Intergenic	Intergenic	-2522	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
128553	chr2	60884001	60884280	+	0	NA	intron (NM_001291746, intron 1 of 9)	intron (NM_001291746, intron 1 of 9)	2566	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
150197	chr21	39350801	39351000	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-1812	NM_004965	3150		NM_004965	ENSG00000205581	HMGN1	HMG14	high mobility group nucleosome binding domain 1	protein-coding
134680	chr2	144477171	144477630	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-42214	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
110117	chr19	1567701	1568850	+	0	NA	promoter-TSS (NM_001174118)	promoter-TSS (NM_001174118)	50	NM_001174118	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
145139	chr20	38824771	38825130	+	0	NA	intron (NM_001172735, intron 1 of 9)	AluSz|SINE|Alu	19253	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
234186	chrX	11908451	11908630	+	0	NA	intron (NM_001368395, intron 3 of 18)	L1M4a2|LINE|L1	86101	NM_001368398	9758		NM_014728	ENSG00000169933	FRMPD4	MRX104|PDZD10|PDZK10|XLID104	FERM and PDZ domain containing 4	protein-coding
52499	chr12	56032051	56032750	+	0	NA	intron (NM_001351091, intron 6 of 8)	intron (NM_001351091, intron 6 of 8)	-7309	NR_135023	105369781		NR_135023		LOC105369781	-	uncharacterized LOC105369781	ncRNA
202263	chr6	157012471	157012700	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-23842	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
131000	chr2	87806271	87806630	+	0	NA	intron (NM_001382344, intron 7 of 22).2	intron (NM_001382344, intron 7 of 22).2	19317	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
211664	chr7	106274421	106275130	+	0	NA	intron (NM_005746, intron 3 of 10)	AluSz|SINE|Alu	10208	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
55833	chr12	108951121	108951750	+	0	NA	intron (NM_018711, intron 6 of 15)	intron (NM_018711, intron 6 of 15)	69633	NM_018711	55530		NM_018711	ENSG00000166111	SVOP	SLC22B4	SV2 related protein	protein-coding
85778	chr16	56938271	56939780	+	0	NA	intron (NM_014685, intron 4 of 7)	intron (NM_014685, intron 4 of 7)	6883	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
70501	chr14	102164151	102164450	+	0	NA	intron (NM_001353659, intron 1 of 1)	L2c|LINE|L2	24403	NM_001353680	91833		NM_144574	ENSG00000140153	WDR20	Bun107|DMR	WD repeat domain 20	protein-coding
14632	chr1	145467371	145467530	+	0	NA	Intergenic	LTR8|LTR|ERV1	-61672	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
67619	chr14	72924001	72924400	+	0	NA	Intergenic	Intergenic	-2264	NM_001352448	26094		NM_015604	ENSG00000119599	DCAF4	WDR21|WDR21A	DDB1 and CUL4 associated factor 4	protein-coding
97898	chr17	45116271	45116430	+	0	NA	intron (NM_133373, intron 8 of 14)	intron (NM_133373, intron 8 of 14)	-1917	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
225624	chr9	36256121	36256600	+	0	NA	intron (NM_001128227, intron 1 of 11)	AluSx1|SINE|Alu	2088	NM_001190384	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
235973	chrX	53713721	53714240	+	0	NA	Intergenic	Intergenic	-27261	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
167989	chr3	136742401	136742600	+	0	NA	intron (NM_005862, intron 1 of 33)	AluSz|SINE|Alu	9878	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
204567	chr7	5223051	5223350	+	0	NA	intron (NM_015610, intron 8 of 12)	intron (NM_015610, intron 8 of 12)	8931	NM_001033520	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
134569	chr2	144215971	144216530	+	0	NA	intron (NM_001164629, intron 2 of 11)	intron (NM_001164629, intron 2 of 11)	21089	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
38420	chr11	45082871	45083730	+	0	NA	Intergenic	Intergenic	-10859	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
137516	chr2	197191451	197192900	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	-5816	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
221961	chr8	129971221	129972630	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	-32114	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
97191	chr17	42685021	42685280	+	0	NA	intron (NM_003632, intron 4 of 23)	CpG	2619	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
137831	chr2	200483701	200483950	+	0	NA	Intergenic	LTR41|LTR|ERVL	26243	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
215921	chr8	8233651	8234550	+	0	NA	intron (NR_024363, intron 3 of 5)	intron (NR_024363, intron 3 of 5)	5530	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
54226	chr12	79958021	79958100	+	0	NA	Intergenic	AluY|SINE|Alu	-22605	NM_001244990	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
29671	chr10	72037771	72037930	+	0	NA	Intergenic	LTR40a|LTR|ERVL	50701	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
78210	chr15	90597351	90598450	+	0	NA	intron (NM_001042574, intron 3 of 14)	L1M6|LINE|L1	-62334	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
22840	chr1	225444451	225446700	+	0	NA	Intergenic	AluSq2|SINE|Alu	-16720	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
4589	chr1	22075571	22075730	+	0	NA	intron (NM_001039802, intron 2 of 6)	MIR|SINE|MIR	22941	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
225723	chr9	36991571	36991800	+	0	NA	intron (NM_001280553, intron 4 of 7)	intron (NM_001280553, intron 4 of 7)	42583	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
98573	chr17	47717121	47717730	+	0	NA	Intergenic	Intergenic	-15811	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
216296	chr8	12597571	12598500	+	0	NA	intron (NR_047662, intron 6 of 8)	intron (NR_047662, intron 6 of 8)	67576	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
222914	chr8	142849251	142849550	+	0	NA	Intergenic	L1M4|LINE|L1	14599	NM_002066	2765		NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
211763	chr7	107207151	107207800	+	0	NA	3' UTR (NM_001161520, exon 21 of 21)	3' UTR (NM_001161520, exon 21 of 21)	38472	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
131281	chr2	96097721	96097980	+	0	NA	Intergenic	L1ME3|LINE|L1	18721	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
81949	chr16	11843301	11843500	+	0	NA	intron (NM_015659, intron 5 of 8)	intron (NM_015659, intron 5 of 8)	8142	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
85941	chr16	57146001	57146200	+	0	NA	exon (NM_152727, exon 15 of 16)	exon (NM_152727, exon 15 of 16)	36450	NM_001354098	80011		NM_024946	ENSG00000172775	PSME3IP1	C16orf94|CDA018|CDA10|FAM192A|NIP30|PIP30	proteasome activator subunit 3 interacting protein 1	protein-coding
50848	chr12	49125571	49125880	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	5670	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
142196	chr20	2983801	2984750	+	0	NA	intron (NM_001385320, intron 7 of 21)	L2a|LINE|L2	-59347	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
221855	chr8	128283401	128283600	+	0	NA	Intergenic	L1ME3A|LINE|L1	133384	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
151409	chr21	46052701	46053800	+	0	NA	Intergenic	Intergenic	-44862	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
212611	chr7	129210251	129211080	+	0	NA	intron (NM_005631, intron 9 of 11)	intron (NM_005631, intron 9 of 11)	-14365	NM_015328	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
193265	chr6	29958471	29959050	+	0	NA	Intergenic	Intergenic	16228	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
50141	chr12	45726711	45728100	+	0	NA	non-coding (NR_028408, exon 1 of 1)	non-coding (NR_028408, exon 1 of 1)	516	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
204710	chr7	5535351	5535450	+	0	NA	Intergenic	AluJb|SINE|Alu	-4799	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
138211	chr2	202700151	202700750	+	0	NA	intron (NM_173511, intron 2 of 7)	Tigger1|DNA|TcMar-Tigger	65481	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
5478	chr1	25667851	25668150	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	-28155	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
186639	chr5	138556171	138556330	+	0	NA	intron (NM_004134, intron 16 of 16)	intron (NM_004134, intron 16 of 16)	2791	NR_145752	109617013		NR_145752	ENSG00000222937	SNORD63B	-	small nucleolar RNA, C/D box 63B	snoRNA
102180	chr17	75147851	75148150	+	0	NA	intron (NM_001288609, intron 2 of 4)	AluSx|SINE|Alu	5293	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
7411	chr1	32950701	32950900	+	0	NA	intron (NM_001127361, intron 1 of 8)	AluJb|SINE|Alu	14009	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
202686	chr6	158798351	158798850	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-19379	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
100703	chr17	63836871	63837230	+	0	NA	intron (NM_001330439, intron 3 of 12)	intron (NM_001330439, intron 3 of 12)	1678	NM_001330440	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
29869	chr10	72611771	72612330	+	0	NA	intron (NM_006077, intron 1 of 11)	intron (NM_006077, intron 1 of 11)	14029	NM_001195518	10367		NM_006077	ENSG00000107745	MICU1	CALC|CBARA1|EFHA3|MPXPS|ara CALC	mitochondrial calcium uptake 1	protein-coding
61395	chr13	51585851	51585950	+	0	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	1438	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
237201	chrX	108019671	108020030	+	0	NA	Intergenic	L1M2|LINE|L1	-25120	NM_001170553	340547		NM_182607	ENSG00000101842	VSIG1	1700062D20Rik|GPA34|dJ889N15.1	V-set and immunoglobulin domain containing 1	protein-coding
116407	chr19	17979751	17980080	+	0	NA	intron (NM_002248, intron 4 of 10)	intron (NM_002248, intron 4 of 10)	-21209	NM_001025604	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
149604	chr21	33334601	33335000	+	0	NA	intron (NM_001384503, intron 1 of 10)	intron (NM_001384503, intron 1 of 10)	9830	NM_001384503	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
148395	chr20	63932101	63932300	+	0	NA	3' UTR (NM_025219, exon 5 of 5)	3' UTR (NM_025219, exon 5 of 5)	9344	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
233420	chr9	137598651	137599300	+	0	NA	Intergenic	AluJb|SINE|Alu	-6665	NM_001317968	92714		NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
10854	chr1	77971601	77971880	+	0	NA	intron (NR_146539, intron 1 of 22)	AluSx3|SINE|Alu	7332	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
180393	chr5	9544351	9545050	+	0	NA	intron (NM_003966, intron 1 of 22)	CpG	1375	NM_003966	9037		NM_003966	ENSG00000112902	SEMA5A	SEMAF|semF	semaphorin 5A	protein-coding
92927	chr17	16683651	16683950	+	0	NA	Intergenic	Intergenic	-6441	NM_001382000	9720		NM_014695	ENSG00000170160	CCDC144A	-	coiled-coil domain containing 144A	protein-coding
34643	chr10	133322151	133322500	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-9988	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
195074	chr6	35526121	35526380	+	0	NA	Intergenic	Intergenic	-13354	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
12741	chr1	109563051	109563550	+	0	NA	intron (NM_006496, intron 1 of 8)	AluJb|SINE|Alu	14685	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
126075	chr2	25794601	25795530	+	0	NA	promoter-TSS (NM_001369347)	promoter-TSS (NM_001369347)	-374	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
153922	chr22	30322371	30323280	+	0	NA	intron (NM_001204240, intron 1 of 8)	AluJb|SINE|Alu	4116	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
61360	chr13	51080151	51080580	+	0	NA	Intergenic	L1PA6|LINE|L1	-14208	NR_003923	2974		NM_004129	ENSG00000293412	GUCY1B2	GC-SB2	guanylate cyclase 1 soluble subunit beta 2 (pseudogene)	pseudo
149954	chr21	36379051	36379350	+	0	NA	Intergenic	AluJb|SINE|Alu	-6192	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
173081	chr4	6201601	6202800	+	0	NA	intron (NR_037863, intron 1 of 3)	MLT1C|LTR|ERVL-MaLR	1467	NR_037863	285484		NR_037863		JAKMIP1-DT	LINC02495	JAKMIP1 divergent transcript	ncRNA
161002	chr3	37287771	37288300	+	0	NA	intron (NM_001172713, intron 5 of 22)	intron (NM_001172713, intron 5 of 22)	-43840	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
182095	chr5	56014401	56015000	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	19533	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
164682	chr3	67599801	67600000	+	0	NA	intron (NM_001177599, intron 2 of 10)	intron (NM_001177599, intron 2 of 10)	54712	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
79598	chr16	1055001	1055280	+	0	NA	Intergenic	Intergenic	-17616	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
230252	chr9	127898601	127898900	+	0	NA	intron (NM_001286999, intron 1 of 6)	MIRb|SINE|MIR	898	NM_001287000	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
46332	chr11	125495171	125495690	+	0	NA	promoter-TSS (NR_164147)	promoter-TSS (NR_164147)	216	NR_164146	403312		NM_203452	ENSG00000255537	LOC403312	-	putative uncharacterized protein MGC39545	ncRNA
125676	chr2	20287021	20287280	+	0	NA	intron (NM_015317, intron 10 of 20)	intron (NM_015317, intron 10 of 20)	40236	NM_001282791	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
223306	chr8	143806151	143806880	+	0	NA	intron (NM_182706, intron 17 of 36).2	intron (NM_182706, intron 17 of 36).2	6527	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
238506	chrX	153646701	153647430	+	0	NA	promoter-TSS (NM_001318503)	promoter-TSS (NM_001318503)	-138	NM_001318503	1852		NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
85258	chr16	48523821	48524080	+	0	NA	Intergenic	Intergenic	86230	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
149703	chr21	34018301	34018500	+	0	NA	Intergenic	MamGypsy2-I|LTR|Gypsy	42018	NR_134561	101928126		NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
237080	chrX	103686541	103687990	+	0	NA	promoter-TSS (NM_012286)	promoter-TSS (NM_012286)	-19	NR_038978	340544		NR_038978		MORF4L2-AS1	-	MORF4L2 antisense RNA 1	ncRNA
146500	chr20	49890751	49891250	+	0	NA	non-coding (NR_048538, exon 14 of 14)	non-coding (NR_048538, exon 14 of 14)	22739	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
225170	chr9	33847321	33847780	+	0	NA	intron (NM_017811, intron 1 of 4)	L1MEg|LINE|L1	30390	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
93873	chr17	21038801	21039280	+	0	NA	intron (NM_015276, intron 1 of 12)	AluSc8|SINE|Alu	3971	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
36767	chr11	9391571	9392130	+	0	NA	intron (NM_006391, intron 1 of 24)	AluJo|SINE|Alu	7198	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
130561	chr2	85714671	85715280	+	0	NA	Intergenic	MER6B|DNA|TcMar-Tigger	20617	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
165527	chr3	100492021	100492830	+	0	NA	promoter-TSS (NM_001363876)	promoter-TSS (NM_001363876)	-194	NM_001363876	55076		NM_018004	ENSG00000181458	TMEM45A	DERP7|DNAPTP4	transmembrane protein 45A	protein-coding
100604	chr17	63450221	63450980	+	0	NA	Intergenic	Intergenic	-4294	NM_001915	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
209975	chr7	92812101	92812500	+	0	NA	intron (NM_001145306, intron 2 of 7)	MIR3|SINE|MIR	21659	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
174312	chr4	38606071	38606730	+	0	NA	Intergenic	Intergenic	42397	NR_146991	105374411		NR_146991		LINC02278	-	long intergenic non-protein coding RNA 2278	ncRNA
129428	chr2	69435621	69435880	+	0	NA	intron (NM_001374284, intron 2 of 8)	intron (NM_001374284, intron 2 of 8)	1685	NM_015700	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
177421	chr4	112506701	112506900	+	0	NA	Intergenic	Intergenic	-8579	NR_161159	105377372		NR_161159		NEUROG2-AS1	-	NEUROG2 and ZGRF1 antisense RNA 1	ncRNA
192969	chr6	27873051	27874230	+	0	NA	promoter-TSS (NM_003546)	promoter-TSS (NM_003546)	-106	NM_003546	8368		NM_003546	ENSG00000275126	H4C13	H4-16|H4.k|H4/k|H4C1|H4C11|H4C12|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4FK|HIST1H4L	H4 clustered histone 13	protein-coding
137337	chr2	196137351	196137700	+	0	NA	exon (NM_004226, exon 8 of 8)	exon (NM_004226, exon 8 of 8)	34053	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
219799	chr8	81251001	81251200	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-29436	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
14415	chr1	144316851	144317350	+	0	NA	Intergenic	L1MC4|LINE|L1	-3162	NR_160535	105371215		NR_160535		LOC105371215	-	uncharacterized LOC105371215	ncRNA
173200	chr4	6791151	6791450	+	0	NA	intron (NM_001100590, intron 1 of 8)	intron (NM_001100590, intron 1 of 8)	8568	NM_001100590	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
207339	chr7	44064171	44064530	+	0	NA	3' UTR (NM_001284313, exon 11 of 11)	3' UTR (NM_001284313, exon 11 of 11)	1217	NM_000290	5224		NM_000290	ENSG00000164708	PGAM2	GSD10|PGAM-M|PGAMM	phosphoglycerate mutase 2	protein-coding
12978	chr1	110898871	110899730	+	0	NA	3' UTR (NM_001320638, exon 6 of 6)	3' UTR (NM_001320638, exon 6 of 6)	26152	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
100954	chr17	64495961	64499280	+	0	NA	promoter-TSS (NM_007215)	promoter-TSS (NM_007215)	-566	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
3526	chr1	16070021	16070930	+	0	NA	intron (NM_182623, intron 1 of 6)	intron (NM_182623, intron 1 of 6)	3176	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
156501	chr22	41293601	41294000	+	0	NA	intron (NM_001317930, intron 1 of 15)	intron (NM_001317930, intron 1 of 15)	-7613	NM_001278651	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
185211	chr5	119690171	119690350	+	0	NA	Intergenic	L1HS|LINE|L1	60701	NM_182761	340069		NM_182761	ENSG00000164334	FAM170A	ZNFD	family with sequence similarity 170 member A	protein-coding
132716	chr2	109075871	109076030	+	0	NA	Intergenic	L1MA9|LINE|L1	-53255	NM_001099289	344558		NM_001099289	ENSG00000172985	SH3RF3	POSH2|SH3MD4	SH3 domain containing ring finger 3	protein-coding
160447	chr3	29153871	29154130	+	0	NA	Intergenic	Intergenic	126939	NR_109804	100873979		NR_109804		RBMS3-AS3	-	RBMS3 antisense RNA 3	ncRNA
59445	chr13	25891001	25891200	+	0	NA	intron (NM_016529, intron 33 of 36)	intron (NM_016529, intron 33 of 36)	160916	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
83916	chr16	29012651	29013980	+	0	NA	Intergenic	L1MB2|LINE|L1	28263	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
1950	chr1	6574221	6574480	+	0	NA	intron (NM_177540, intron 2 of 4)	L2b|LINE|L2	-5644	NM_001278648	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
142072	chr20	2379271	2380080	+	0	NA	Intergenic	Intergenic	-1226	NM_001254734	343641		NM_198994	ENSG00000166948	TGM6	SCA35|TG6|TGM3L|TGY|dJ734P14.3	transglutaminase 6	protein-coding
54703	chr12	93435371	93435530	+	0	NA	intron (NM_003348, intron 1 of 3)	AluSq2|SINE|Alu	6497	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
75710	chr15	68065551	68066200	+	0	NA	intron (NM_001320687, intron 2 of 14)	AluJr|SINE|Alu	11299	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
55180	chr12	100304051	100304150	+	0	NA	intron (NM_001317784, intron 4 of 17)	L1PA7|LINE|L1	36716	NM_001330253	55681		NM_017988	ENSG00000136021	SCYL2	AMC4|AMCNACC|CVAK104	SCY1 like pseudokinase 2	protein-coding
165370	chr3	93323741	93323850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	650101	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
101819	chr17	73585521	73585780	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	58795	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
186701	chr5	138752821	138754080	+	0	NA	promoter-TSS (NM_001323982)	promoter-TSS (NM_001323982)	25	NM_001323984	1495		NM_001903	ENSG00000044115	CTNNA1	CAP102|MDBS2|MDPT2	catenin alpha 1	protein-coding
165845	chr3	105854121	105854780	+	0	NA	intron (NM_001321811, intron 2 of 16)	intron (NM_001321811, intron 2 of 16)	13141	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
163106	chr3	50116101	50116930	+	0	NA	non-coding (NR_135301, exon 4 of 4)	non-coding (NR_135301, exon 4 of 4)	-15527	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
231817	chr9	132452271	132452430	+	0	NA	intron (NM_001282957, intron 1 of 5)	intron (NM_001282957, intron 1 of 5)	42139	NM_207417	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
197802	chr6	87696651	87697080	+	0	NA	intron (NM_018064, intron 1 of 4)	AluSg|SINE|Alu	5368	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
80980	chr16	3960401	3960600	+	0	NA	Intergenic	AluSx|SINE|Alu	-10056	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
190965	chr6	2951721	2952030	+	0	NA	intron (NM_001271823, intron 5 of 6)	intron (NM_001271823, intron 5 of 6)	10255	NM_001271825	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
88278	chr16	83807271	83808830	+	0	NA	promoter-TSS (NM_001537)	promoter-TSS (NM_001537)	72	NM_001537	3281		NM_001537	ENSG00000230989	HSBP1	NPC-A-13	heat shock factor binding protein 1	protein-coding
188372	chr5	151782801	151783780	+	0	NA	intron (NM_198395, intron 1 of 11)	intron (NM_198395, intron 1 of 11)	-11114	NR_132345	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
94441	chr17	29176251	29177180	+	0	NA	promoter-TSS (NM_001346767)	promoter-TSS (NM_001346767)	58	NM_001346767	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
91476	chr17	4888201	4888400	+	0	NA	intron (NM_015716, intron 12 of 30)	intron (NM_015716, intron 12 of 30)	-11236	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
108889	chr18	79410021	79411480	+	0	NA	exon (NM_001278672, exon 2 of 9)	exon (NM_001278672, exon 2 of 9)	10451	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
106391	chr18	13380521	13380900	+	0	NA	intron (NM_001378098, intron 1 of 5)	intron (NM_001378098, intron 1 of 5)	42107	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
238887	chrX	154558051	154559130	+	0	NA	exon (NM_001099857, exon 4 of 10)	exon (NM_001099857, exon 4 of 10)	10743	NM_003639	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
207033	chr7	38889821	38890080	+	0	NA	intron (NM_080631, intron 2 of 27)	L1MDa|LINE|L1	19241	NM_014396	27072		NM_014396	ENSG00000006715	VPS41	HVPS41|HVSP41|SCAR29|hVps41p	VPS41 subunit of HOPS complex	protein-coding
171259	chr3	195862851	195863500	+	0	NA	TTS (NM_001010938)	TTS (NM_001010938)	-2771	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
82369	chr16	15999371	15999780	+	0	NA	intron (NM_004996, intron 1 of 30)	AluSp|SINE|Alu	49959	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
214615	chr7	150718721	150719350	+	0	NA	intron (NM_001303630, intron 1 of 4)	intron (NM_001303630, intron 1 of 4)	2422	NM_130759	170575		NM_130759	ENSG00000213203	GIMAP1	HIMAP1|IAN2|IMAP1|IMAP38	GTPase, IMAP family member 1	protein-coding
47636	chr12	6229871	6230030	+	0	NA	intron (NM_001769, intron 2 of 7)	intron (NM_001769, intron 2 of 7)	29550	NM_001769	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
56772	chr12	120166421	120167150	+	0	NA	intron (NM_006836, intron 16 of 57)	AluJb|SINE|Alu	-11286	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
68184	chr14	76331521	76331980	+	0	NA	Intergenic	Intergenic	-39521	NM_004452	2103		NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR beta-2|ERR2|ERRb|ERRbeta2|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
153044	chr22	23274151	23274250	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	11433	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
180142	chr5	1343121	1343630	+	0	NA	intron (NM_030782, intron 2 of 16)	intron (NM_030782, intron 2 of 16)	1724	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
228477	chr9	99904221	99904630	+	0	NA	intron (NR_038853, intron 1 of 2)	AluJr|SINE|Alu	2176	NR_038853	441461		NR_038853		STX17-DT	STX17-AS1	STX17 divergent transcript	ncRNA
84080	chr16	29604621	29605750	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	-5920	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
218005	chr8	38411601	38412280	+	0	NA	3' UTR (NM_001174065, exon 18 of 18)	3' UTR (NM_001174065, exon 18 of 18)	24809	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
21472	chr1	205596651	205596950	+	0	NA	intron (NM_181644, intron 7 of 9)	intron (NM_181644, intron 7 of 9)	-27495	NR_152721	284578		NR_027086		MFSD4A-AS1	-	MFSD4A antisense RNA 1	ncRNA
214488	chr7	150408571	150409530	+	0	NA	intron (NR_027237, intron 2 of 2)	intron (NR_027237, intron 2 of 2)	3298	NR_027237	728743		NM_001080852	ENSG00000284691	LOC728743	-	zinc finger domain-containing protein LOC728743	protein-coding
30219	chr10	74894701	74894900	+	0	NA	intron (NM_012330, intron 3 of 17).2	L1MB2|LINE|L1	-17986	NR_134476								
92715	chr17	14200271	14200430	+	0	NA	intron (NM_001303, intron 6 of 6)	intron (NM_001303, intron 6 of 6)	36512	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
40287	chr11	63851121	63851980	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	12440	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
162748	chr3	49052501	49053100	+	0	NA	intron (NM_001320580, intron 4 of 10)	AluSg7|SINE|Alu	-23402	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
70429	chr14	102035601	102035800	+	0	NA	intron (NM_001376, intron 56 of 77)	intron (NM_001376, intron 56 of 77)	51344	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
69969	chr14	99791621	99792080	+	0	NA	intron (NM_001375411, intron 1 of 21)	intron (NM_001375411, intron 1 of 21)	-1563	NM_001008707	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
190851	chr6	1619321	1620500	+	0	NA	Intergenic	CpG	9995	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
92674	chr17	12020321	12022080	+	0	NA	intron (NM_003010, intron 1 of 10)	CpG	323	NM_003010	6416		NM_003010	ENSG00000065559	MAP2K4	JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1	mitogen-activated protein kinase kinase 4	protein-coding
145267	chr20	40797551	40797650	+	0	NA	Intergenic	L2c|LINE|L2	-82977	NR_145814	109623474		NR_145814		SNORD154	-	small nucleolar RNA, C/D box 154	snoRNA
19583	chr1	179296251	179296350	+	0	NA	intron (NR_045530, intron 1 of 13)	MER44A|DNA|TcMar-Tigger	2503	NM_003101	6646		NM_003101	ENSG00000057252	SOAT1	ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT	sterol O-acyltransferase 1	protein-coding
180099	chr5	1157071	1157630	+	0	NA	Intergenic	Intergenic	21255	NR_109911	101928857		NR_109911	ENSG00000249201	TERLR1	CTD-3080P12.3	TERT regulating lncRNA 1	ncRNA
195938	chr6	41923371	41924030	+	0	NA	intron (NM_004053, intron 1 of 6)	AluJo|SINE|Alu	2201	NM_004053	705		NM_004053	ENSG00000112578	BYSL	BYSTIN|Enp1	bystin like	protein-coding
132133	chr2	101708601	101709000	+	0	NA	intron (NM_001384572, intron 1 of 29)	L1MB7|LINE|L1	10535	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
12162	chr1	100342551	100342700	+	0	NA	Intergenic	Intergenic	-2390	NM_001319211	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
23489	chr1	228640771	228640930	+	0	NA	Intergenic	CpG	-3797	NR_037962	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
168311	chr3	141561301	141561980	+	0	NA	intron (NM_006506, intron 9 of 23)	intron (NM_006506, intron 9 of 23)	74613	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
140545	chr2	233259051	233259430	+	0	NA	intron (NM_198890, intron 2 of 13).2	LTR31|LTR|ERV1	7567	NM_017974	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
230350	chr9	128030021	128030300	+	0	NA	Intergenic	AluSx|SINE|Alu	37160	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
234998	chrX	39814271	39814700	+	0	NA	Intergenic	MER94|DNA|hAT-Blackjack	-23076	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
11566	chr1	91500521	91501880	+	0	NA	promoter-TSS (NM_001134420)	promoter-TSS (NM_001134420)	92	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
128785	chr2	62287671	62288200	+	0	NA	Intergenic	Intergenic	72414	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
18070	chr1	160645351	160646080	+	0	NA	intron (NR_104400, intron 1 of 4)	intron (NR_104400, intron 1 of 4)	1329	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
174210	chr4	37673401	37673600	+	0	NA	intron (NM_001085400, intron 1 of 6)	intron (NM_001085400, intron 1 of 6)	12876	NM_001085399	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
121715	chr19	47607871	47609550	+	0	NA	intron (NM_015711, intron 1 of 14)	CpG	514	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
219226	chr8	66774321	66775850	+	0	NA	promoter-TSS (NM_013257)	promoter-TSS (NM_013257)	-96	NM_013257	23678		NM_013257	ENSG00000104205	SGK3	CISK|SGK2|SGKL	serum/glucocorticoid regulated kinase family member 3	protein-coding
139844	chr2	230447451	230448580	+	0	NA	intron (NM_001080391, intron 5 of 28)	intron (NM_001080391, intron 5 of 28)	31259	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
70737	chr14	103368701	103369200	+	0	NA	Intergenic	AluY|SINE|Alu	-16414	NM_001128919	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
64129	chr14	22855471	22855630	+	0	NA	Intergenic	AluJb|SINE|Alu	-16190	NM_014045	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
144023	chr20	33486971	33487130	+	0	NA	Intergenic	AluJb|SINE|Alu	-3046	NM_001032999	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
2878	chr1	11501501	11501780	+	0	NA	exon (NM_020780, exon 2 of 21)	exon (NM_020780, exon 2 of 21)	22485	NM_020780	57540		NM_020780	ENSG00000204624	DISP3	PTCHD2	dispatched RND transporter family member 3	protein-coding
145425	chr20	43460801	43461450	+	0	NA	non-coding (NR_034009, exon 7 of 7)	non-coding (NR_034009, exon 7 of 7)	3229	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
161381	chr3	41188371	41188530	+	0	NA	Intergenic	Intergenic	-11055	NM_001330729	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
225590	chr9	36137921	36138180	+	0	NA	intron (NM_001287014, intron 1 of 1)	intron (NM_001287014, intron 1 of 1)	1265	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
218936	chr8	60914901	60915300	+	0	NA	Intergenic	Intergenic	-4302	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
173302	chr4	7132151	7132450	+	0	NA	Intergenic	Intergenic	-28924	NR_027441	730971		NR_027441		LINC02447	-	long intergenic non-protein coding RNA 2447	ncRNA
172664	chr4	2722251	2722550	+	0	NA	intron (NM_001256668, intron 19 of 19)	intron (NM_001256668, intron 19 of 19)	33936	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
224316	chr9	6702251	6702880	+	0	NA	Intergenic	AluY|SINE|Alu	-18298	NM_001146696	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
208878	chr7	73823821	73824080	+	0	NA	Intergenic	AluJr|SINE|Alu	-7046	NM_001305	1364		NM_001305	ENSG00000189143	CLDN4	CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R	claudin 4	protein-coding
20897	chr1	202156371	202157050	+	0	NA	intron (NR_037663, intron 4 of 9)	intron (NR_037663, intron 4 of 9)	2744	NM_001364878	5778		NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase non-receptor type 7	protein-coding
104850	chr17	81842671	81843280	+	0	NA	TTS (NM_000918)	TTS (NM_000918)	-7925	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
81642	chr16	10939251	10939430	+	0	NA	intron (NM_014015, intron 1 of 1)	L2b|LINE|L2	3128	NM_014015	28955		NM_014015	ENSG00000182108	DEXI	MYLE	Dexi homolog	protein-coding
10039	chr1	58392021	58392630	+	0	NA	intron (NM_001379461, intron 3 of 20)	LTR33C|LTR|ERVL	-141822	NM_001353980	1600		NM_021080	ENSG00000173406	DAB1	SCA37	DAB adaptor protein 1	protein-coding
188543	chr5	156664951	156665150	+	0	NA	intron (NM_000337, intron 7 of 8)	HERVK-int|LTR|ERVK	-185245	NM_206858	153743		NM_206858	ENSG00000231989	PPP1R2B	PPP1R2P3	PPP1R2 family member B	protein-coding
227369	chr9	89491021	89491300	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	4496	NM_001371198	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
164634	chr3	66440651	66440750	+	0	NA	intron (NM_001377344, intron 2 of 17)	intron (NM_001377344, intron 2 of 17)	-34542	NM_001377347	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
109545	chr19	872401	874350	+	0	NA	intron (NM_005481, intron 11 of 15)	intron (NM_005481, intron 11 of 15)	13711	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
170833	chr3	190176921	190177180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-54613	NM_001134418	55214		NM_018192	ENSG00000090530	P3H2	LEPREL1|MCVD|MLAT4	prolyl 3-hydroxylase 2	protein-coding
29309	chr10	69327301	69328400	+	0	NA	intron (NM_000188, intron 1 of 17)	intron (NM_000188, intron 1 of 17)	9003	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
61461	chr13	52187321	52187880	+	0	NA	intron (NR_051965, intron 1 of 7)	MLT1G3|LTR|ERVL-MaLR	6867	NR_051965	100887750		NR_002816	ENSG00000291010	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
65469	chr14	51845401	51845800	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-15012	NM_001243773	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
171611	chr3	197394551	197395080	+	0	NA	Intergenic	Intergenic	-95494	NM_001366203	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
14288	chr1	143785801	143786080	+	0	NA	Intergenic	Intergenic	-6555	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
142988	chr20	20211321	20211580	+	0	NA	intron (NM_015585, intron 17 of 26)	intron (NM_015585, intron 17 of 26)	154804	NM_001167816	26074		NM_015585	ENSG00000089101	CFAP61	C20orf26|CaM-IP3|SPGF84|dJ1002M8.3|dJ1178H5.4	cilia and flagella associated protein 61	protein-coding
46045	chr11	122695271	122695650	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	39738	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
47102	chr12	661771	662130	+	0	NA	intron (NM_016533, intron 1 of 3)	L2a|LINE|L2	1495	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
196608	chr6	44242621	44243130	+	0	NA	Intergenic	Intergenic	-3291	NM_001271970	3326		NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
95214	chr17	35248371	35248930	+	0	NA	intron (NM_144975, intron 1 of 4)	MER89-int|LTR|ERV1	5578	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
164733	chr3	69010771	69011530	+	0	NA	intron (NM_173654, intron 3 of 14)	intron (NM_173654, intron 3 of 14)	2534	NR_103826	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
178681	chr4	152523501	152523700	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	11433	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
147776	chr20	62550221	62551400	+	0	NA	5' UTR (NM_178463, exon 1 of 4)	5' UTR (NM_178463, exon 1 of 4)	357	NM_001302812	128826		NM_178463	ENSG00000174407	MIR1-1HG	C20orf166|MIR133A2HG	MIR1-1 host gene	ncRNA
61800	chr13	75482201	75482690	+	0	NA	promoter-TSS (NM_001286659)	promoter-TSS (NM_001286659)	-276	NM_014832	9882		NM_014832	ENSG00000136111	TBC1D4	AS160|NIDDM5	TBC1 domain family member 4	protein-coding
114479	chr19	12748571	12749100	+	0	NA	TTS (NM_004317)	TTS (NM_004317)	-2956	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
172763	chr4	2875801	2876200	+	0	NA	exon (NM_001354762, exon 2 of 17)	exon (NM_001354762, exon 2 of 17)	31850	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
134148	chr2	134206321	134206780	+	0	NA	intron (NM_001371457, intron 1 of 16)	MLT1D|LTR|ERVL-MaLR	-47522	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
122803	chr19	50368171	50369900	+	0	NA	Intergenic	Intergenic	-3396	NM_004851	9476		NM_004851	ENSG00000131400	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
67912	chr14	74615471	74615630	+	0	NA	Intergenic	Intergenic	-3313	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
14939	chr1	147627171	147628000	+	0	NA	Intergenic	Intergenic	42939	NR_136634	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
19685	chr1	181020651	181020950	+	0	NA	intron (NM_005819, intron 1 of 7)	intron (NM_005819, intron 1 of 7)	2070	NM_005819	10228		NM_005819	ENSG00000135823	STX6	-	syntaxin 6	protein-coding
86550	chr16	67189821	67190280	+	0	NA	promoter-TSS (NM_178516)	promoter-TSS (NM_178516)	86	NM_178516	283849		NM_178516	ENSG00000179044	EXOC3L1	EXOC3L	exocyst complex component 3 like 1	protein-coding
196958	chr6	52839351	52839900	+	0	NA	intron (NM_153699, intron 2 of 6)	intron (NM_153699, intron 2 of 6)	6470	NM_153699	221357		NM_153699	ENSG00000182793	GSTA5	-	glutathione S-transferase alpha 5	protein-coding
163253	chr3	50286851	50287150	+	0	NA	TTS (NM_006764)	TTS (NM_006764)	5429	NM_006764	7866		NM_006764	ENSG00000214706	IFRD2	IFNRP|SKMc15|SM15	interferon related developmental regulator 2	protein-coding
189662	chr5	176364071	176364230	+	0	NA	Intergenic	Intergenic	-1318	NM_001317948	285598		NM_173664	ENSG00000175414	ARL10	ARL10A	ADP ribosylation factor like GTPase 10	protein-coding
185659	chr5	131579471	131579630	+	0	NA	intron (NM_016340, intron 4 of 27)	LTR12C|LTR|ERV1	55679	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
21900	chr1	207815671	207817000	+	0	NA	intron (NR_135299, intron 3 of 5)	intron (NR_135299, intron 3 of 5)	-2044	NR_026817	148696		NM_001039568		LOC148696	-	uncharacterized LOC148696	ncRNA
9264	chr1	46287071	46287230	+	0	NA	intron (NM_006369, intron 3 of 9)	AluY|SINE|Alu	16466	NM_006369	10489		NM_006369	ENSG00000132128	LRRC41	MUF1|PP7759	leucine rich repeat containing 41	protein-coding
30257	chr10	75116971	75117500	+	0	NA	intron (NM_144660, intron 1 of 4)	AluJo|SINE|Alu	5579	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
158644	chr3	4995471	4995630	+	0	NA	Intergenic	Intergenic	-15589	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
109827	chr19	1173621	1175950	+	0	NA	promoter-TSS (NM_014963).2	promoter-TSS (NM_014963).2	-517	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
198752	chr6	108575071	108575630	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	14433	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
64097	chr14	22711551	22712150	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-54838	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
42077	chr11	67494421	67494930	+	0	NA	intron (NM_001130848, intron 18 of 23)	CpG-4568	4430	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
82809	chr16	21475021	21475880	+	0	NA	intron (NR_027155, intron 6 of 28)	intron (NR_027155, intron 6 of 28)	-26076	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
213955	chr7	142721071	142721230	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-28322	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
137012	chr2	190662421	190662880	+	0	NA	intron (NM_005966, intron 4 of 9)	intron (NM_005966, intron 4 of 9)	3492	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
152826	chr22	21939551	21939650	+	0	NA	exon (NM_014634, exon 3 of 8)	exon (NM_014634, exon 3 of 8)	1363	NR_147620	100286925		NR_147620		PPM1F-AS1	-	PPM1F antisense RNA 1	ncRNA
74293	chr15	57861051	57861250	+	0	NA	Intergenic	Intergenic	152873	NM_170697	8854		NM_003888	ENSG00000128918	ALDH1A2	DIH4|RALDH(II)|RALDH2|RALDH2-T	aldehyde dehydrogenase 1 family member A2	protein-coding
27812	chr10	37974921	37975380	+	0	NA	intron (NR_138065, intron 1 of 7)	L1MA4|LINE|L1	830	NR_138069	219749		NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
38091	chr11	35207351	35207450	+	0	NA	intron (NM_001001389, intron 10 of 16)	intron (NM_001001389, intron 10 of 16)	44450	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
185909	chr5	132815271	132815430	+	0	NA	3' UTR (NM_175873, exon 1 of 1)	3' UTR (NM_175873, exon 1 of 1)	2048	NM_175873	134548		NM_175873	ENSG00000198944	SOWAHA	ANKRD43	sosondowah ankyrin repeat domain family member A	protein-coding
174037	chr4	26866171	26867050	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	5769	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
34545	chr10	133010171	133010850	+	0	NA	Intergenic	Intergenic	44976	NR_046231	399829		NR_046231	ENSG00000240707	LINC01168	-	long intergenic non-protein coding RNA 1168	ncRNA
84637	chr16	30712451	30712550	+	0	NA	intron (NM_006662, intron 13 of 33)	intron (NM_006662, intron 13 of 33)	1963	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
25726	chr10	9022051	9022350	+	0	NA	Intergenic	Intergenic	124211	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
28703	chr10	61286651	61287130	+	0	NA	Intergenic	Intergenic	-165749	NR_120643	101928781		NR_120643		TMEM26-AS1	-	TMEM26 antisense RNA 1	ncRNA
157478	chr22	45303121	45303380	+	0	NA	Intergenic	L1MD2|LINE|L1	-5710	NR_146323	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
162067	chr3	46865471	46866080	+	0	NA	Intergenic	Intergenic	-2331	NM_000258	4634		NM_000258	ENSG00000160808	MYL3	CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl	myosin light chain 3	protein-coding
124286	chr19	57823751	57824250	+	0	NA	Intergenic	LTR5B|LTR|ERVK	3462	NR_024162	2282		NR_024162		FKBP1AP1	FKBP12|FKBP1P1	FKBP prolyl isomerase 1A pseudogene 1	pseudo
213605	chr7	139396371	139396530	+	0	NA	intron (NM_016019, intron 2 of 9)	AluJb|SINE|Alu	31076	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
115375	chr19	15238951	15239250	+	0	NA	exon (NM_058243, exon 18 of 20)	exon (NM_058243, exon 18 of 20)	-6053	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
115840	chr19	16519821	16520580	+	0	NA	exon (NM_006387, exon 15 of 17)	exon (NM_006387, exon 15 of 17)	22237	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
237919	chrX	132001251	132001430	+	0	NA	Intergenic	Intergenic	-21962	NM_001042453	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
13656	chr1	116546501	116546900	+	0	NA	intron (NR_026665, intron 1 of 5)	intron (NR_026665, intron 1 of 5)	13411	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
142549	chr20	5121101	5121300	+	0	NA	intron (NM_002592, intron 1 of 6)	intron (NM_002592, intron 1 of 6)	-1242	NM_182649	5111		NM_002592	ENSG00000132646	PCNA	ATLD2	proliferating cell nuclear antigen	protein-coding
107917	chr18	57617521	57617980	+	0	NA	intron (NM_004539, intron 2 of 13)	AluSx4|SINE|Alu	4086	NM_004539	4677		NM_004539	ENSG00000134440	NARS1	ASNRS|NARS|NEDMILEG|NEDMILG	asparaginyl-tRNA synthetase 1	protein-coding
213861	chr7	142307471	142308030	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-35501	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
55945	chr12	109981371	109981930	+	0	NA	intron (NM_139201, intron 6 of 14)	intron (NM_139201, intron 6 of 14)	14718	NM_014776	9815		NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
140827	chr2	236551721	236552380	+	0	NA	Intergenic	Intergenic	-17775	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
234966	chrX	39242271	39242430	+	0	NA	Intergenic	Intergenic	85012	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
191204	chr6	5506801	5507600	+	0	NA	intron (NM_001374875, intron 4 of 6)	intron (NM_001374875, intron 4 of 6)	-49125	NR_125848	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
158743	chr3	9168301	9168500	+	0	NA	intron (NM_014850, intron 1 of 21)	intron (NM_014850, intron 1 of 21)	-24093	NR_121663	101927416		NR_121663	ENSG00000228723	SRGAP3-AS2	-	SRGAP3 antisense RNA 2	ncRNA
165272	chr3	75502401	75502990	+	0	NA	intron (NR_151705, intron 2 of 2)	HERVS71-int|LTR|ERV1	67387	NR_151707	107986100		NR_151705	ENSG00000272690	LINC02018	-	long intergenic non-protein coding RNA 2018	ncRNA
60997	chr13	46983121	46983380	+	0	NA	Intergenic	Intergenic	-85168	NM_001378924	3356		NM_000621	ENSG00000102468	HTR2A	5-HT2A|HTR2	5-hydroxytryptamine receptor 2A	protein-coding
83064	chr16	22342321	22342580	+	0	NA	Intergenic	L1MA9|LINE|L1	32169	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
202112	chr6	154766321	154766580	+	0	NA	intron (NM_001286189, intron 3 of 21)	Tigger2|DNA|TcMar-Tigger	33034	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
228111	chr9	96587871	96588230	+	0	NA	intron (NR_147239, intron 1 of 14)	intron (NR_147239, intron 1 of 14)	-21074	NM_001351570	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
94340	chr17	28854171	28855430	+	0	NA	promoter-TSS (NM_005702)	promoter-TSS (NM_005702)	-216	NM_001317985	26284		NM_005702	ENSG00000132591	ERAL1	CEGA|ERA|ERA-W|ERAL1A|ERAL1B|H-ERA|HERA-A|HERA-B|PRLTS6	Era like 12S mitochondrial rRNA chaperone 1	protein-coding
6041	chr1	27119771	27119930	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	35275	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
97816	chr17	44850871	44851450	+	0	NA	TTS (NM_001271880)	TTS (NM_001271880)	3277	NM_016438	51751		NM_016438	ENSG00000131097	HIGD1B	CLST11240|CLST11240-15	HIG1 hypoxia inducible domain family member 1B	protein-coding
53424	chr12	64824571	64825500	+	0	NA	intron (NM_015279, intron 1 of 11)	CpG	388	NM_001364838	23329		NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
227063	chr9	84206251	84206350	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	134458	NR_037638	64078		NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
188270	chr5	151096071	151096650	+	0	NA	Intergenic	L2c|LINE|L2	-8675	NM_001252390	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
167169	chr3	128073101	128073300	+	0	NA	intron (NM_001319086, intron 9 of 9)	intron (NM_001319086, intron 9 of 9)	-2610	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
80145	chr16	2088371	2088530	+	0	NA	TTS (NM_000296)	TTS (NM_000296)	1834	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
164116	chr3	56690971	56691330	+	0	NA	Intergenic	AluJo|SINE|Alu	-7885	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
87973	chr16	80564321	80564850	+	0	NA	Intergenic	Intergenic	-1450	NR_120307	102724084		NR_120307		DYNLRB2-AS1	-	DYNLRB2 antisense RNA 1	ncRNA
95722	chr17	38569901	38570780	+	0	NA	intron (NM_025248, intron 2 of 18)	intron (NM_025248, intron 2 of 18)	35612	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
221181	chr8	120673001	120673200	+	0	NA	intron (NM_021021, intron 2 of 6)	LTR33A_|LTR|ERVL	-88153	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
43092	chr11	74818571	74818730	+	0	NA	intron (NM_001098638, intron 4 of 5)	AluJr|SINE|Alu	69801	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
144329	chr20	34960401	34961130	+	0	NA	intron (NM_020884, intron 2 of 44)	L2b|LINE|L2	-4738	NM_001322494	2937		NM_000178	ENSG00000100983	GSS	GSHS|HEL-S-64p|HEL-S-88n	glutathione synthetase	protein-coding
15050	chr1	148398671	148398830	+	0	NA	Intergenic	LTR49|LTR|ERV1	-3756	NR_168364	100132057		NR_033189	ENSG00000291232	PDE4DIPP6	-	PDE4DIP pseudogene 6	pseudo
14106	chr1	120923401	120923950	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-9561	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
49034	chr12	14376551	14376850	+	0	NA	intron (NM_001286515, intron 1 of 12)	LTR37-int|LTR|ERV1	-8581	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
4314	chr1	20359551	20359650	+	0	NA	TTS (NR_033887)	TTS (NR_033887)	68725	NM_001039500	127731		NM_144623	ENSG00000158816	VWA5B1	-	von Willebrand factor A domain containing 5B1	protein-coding
208657	chr7	73123371	73123730	+	0	NA	intron (NM_001382504, intron 2 of 9)	AluSz|SINE|Alu	-31374	NR_003580	100093631		NR_003580	ENSG00000293241	GTF2IP4	GTF2I	general transcription factor IIi pseudogene 4	pseudo
146159	chr20	48721971	48722130	+	0	NA	intron (NM_020820, intron 5 of 39)	L2a|LINE|L2	105949	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138659	chr2	212876571	212876730	+	0	NA	Intergenic	L1PA5|LINE|L1	-49607	NR_039935	100616267		NR_039935	ENSG00000266354	MIR4776-1	mir-4776-1	microRNA 4776-1	ncRNA
161506	chr3	42557651	42558500	+	0	NA	intron (NM_004206, intron 4 of 6)	MER20|DNA|hAT-Charlie	-23765	NM_016305	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
180777	chr5	32172251	32173000	+	0	NA	intron (NM_022130, intron 1 of 3)	AluSc|SINE|Alu	1694	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
51487	chr12	52086121	52086980	+	0	NA	intron (NR_120439, intron 1 of 1)	intron (NR_120439, intron 1 of 1)	1804	NR_120438	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
160603	chr3	31268871	31269030	+	0	NA	Intergenic	Intergenic	-107163	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
114446	chr19	12701701	12702350	+	0	NA	intron (NM_001382240, intron 22 of 25)	intron (NM_001382240, intron 22 of 25)	1646	NR_132756	106633804		NR_132756		SNORD135	ZL2	small nucleolar RNA, C/D box 135	snoRNA
213367	chr7	135855951	135856050	+	0	NA	Intergenic	Intergenic	-107187	NM_001369697	389558		NM_205855	ENSG00000189320	FAM180A	UNQ1940	family with sequence similarity 180 member A	protein-coding
212259	chr7	122092971	122093200	+	0	NA	exon (NM_005763, exon 16 of 24)	exon (NM_005763, exon 16 of 24)	51164	NM_005763	10157		NM_005763	ENSG00000008311	AASS	LKR/SDH|LKRSDH|LORSDH	aminoadipate-semialdehyde synthase	protein-coding
2528	chr1	9716401	9718230	+	0	NA	intron (NM_001350234, intron 7 of 23)	intron (NM_001350234, intron 7 of 23)	25848	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
147749	chr20	62410001	62411080	+	0	NA	3' UTR (NM_080833, exon 14 of 14)	3' UTR (NM_080833, exon 14 of 14)	-3257	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
140321	chr2	232521751	232523080	+	0	NA	intron (NM_001369848, intron 4 of 12)	CpG-17123	1952	NM_001369848	646960		NM_001195129	ENSG00000237412	PRSS56	MCOP6	serine protease 56	protein-coding
69662	chr14	97995501	97996280	+	0	NA	Intergenic	Intergenic	-17766	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
116744	chr19	18472971	18473330	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	-35017	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
192189	chr6	17692001	17692630	+	0	NA	intron (NM_001278209, intron 1 of 22)	intron (NM_001278209, intron 1 of 22)	-13815	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
150320	chr21	42013801	42014000	+	0	NA	intron (NR_119384, intron 1 of 1)	intron (NR_119384, intron 1 of 1)	-3540	NM_001320729	49854		NM_020727	ENSG00000173276	ZBTB21	ZNF295	zinc finger and BTB domain containing 21	protein-coding
104782	chr17	81717121	81718030	+	0	NA	intron (NM_012140, intron 8 of 10)	intron (NM_012140, intron 8 of 10)	5291	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
26787	chr10	23293171	23293400	+	0	NA	intron (NM_001371909, intron 5 of 15)	intron (NM_001371909, intron 5 of 15)	-50672	NR_155752	105376453		NR_155752	ENSG00000224215	C10orf67-AS1	-	C10orf67 antisense RNA 1	ncRNA
118028	chr19	34192471	34193230	+	0	NA	intron (NM_001384431, intron 2 of 11).2	AluSz|SINE|Alu	20346	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
138909	chr2	218070771	218071130	+	0	NA	intron (NM_198483, intron 4 of 12)	intron (NM_198483, intron 4 of 12)	1935	NM_198483	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
208907	chr7	74026671	74027400	+	0	NA	promoter-TSS (NM_001278939)	promoter-TSS (NM_001278939)	-754	NM_001278939	2006		NM_000501	ENSG00000049540	ELN	ADCL1|SVAS|WBS|WS	elastin	protein-coding
124663	chr2	3217771	3218200	+	0	NA	intron (NM_001330531, intron 3 of 7)	intron (NM_001330531, intron 3 of 7)	-91959	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
167010	chr3	126081621	126082100	+	0	NA	intron (NM_017836, intron 1 of 10)	intron (NM_017836, intron 1 of 10)	2264	NM_001008486	54946		NM_017836	ENSG00000114544	SLC41A3	SLC41A1-L2	solute carrier family 41 member 3	protein-coding
99080	chr17	48971521	48971950	+	0	NA	Intergenic	Intergenic	-3139	NM_004123	2695		NM_004123	ENSG00000159224	GIP	-	gastric inhibitory polypeptide	protein-coding
160953	chr3	36944251	36946350	+	0	NA	promoter-TSS (NM_001329998)	promoter-TSS (NM_001329998)	-246	NM_001329998	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
117154	chr19	19323521	19323880	+	0	NA	intron (NM_015329, intron 1 of 18)	AluJb|SINE|Alu	2871	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
127101	chr2	37631001	37631400	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	40442	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
179108	chr4	168710451	168710750	+	0	NA	intron (NM_001166108, intron 9 of 21)	intron (NM_001166108, intron 9 of 21)	79022	NM_001166109	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
83998	chr16	29451221	29451930	+	0	NA	intron (NM_001320624, intron 1 of 3)	AluSq2|SINE|Alu	2230	NR_002454	606724		NR_002454		LOC606724	-	coronin 1A pseudogene	pseudo
193427	chr6	30464871	30465550	+	0	NA	Intergenic	Intergenic	-24299	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
102960	chr17	76705901	76706300	+	0	NA	intron (NM_001008528, intron 1 of 3)	intron (NM_001008528, intron 1 of 3)	3497	NR_130926	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
98675	chr17	47850701	47851530	+	0	NA	promoter-TSS (NM_001258248)	promoter-TSS (NM_001258248)	48	NM_001258248	80320		NM_199262	ENSG00000189120	SP6	AI1K|EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
126466	chr2	28361871	28362030	+	0	NA	Intergenic	AluJo|SINE|Alu	-30908	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
160704	chr3	32396451	32396980	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	4862	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
155862	chr22	39473051	39473350	+	0	NA	intron (NM_002409, intron 1 of 1)	MSTD|LTR|ERVL-MaLR	3622	NR_126469	104502417		NR_126469	ENSG00000227188	MGAT3-AS1	TapSAKI	MGAT3 antisense RNA 1	ncRNA
30777	chr10	84342601	84343200	+	0	NA	intron (NM_001284241, intron 1 of 2)	AluSx1|SINE|Alu	14311	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
98714	chr17	47973021	47973280	+	0	NA	intron (NM_176096, intron 2 of 13)	intron (NM_176096, intron 2 of 13)	2037	NM_001278198	80279		NM_025197	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding
131757	chr2	98465601	98466500	+	0	NA	intron (NM_001351429, intron 1 of 23)	AluSz|SINE|Alu	20040	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
234612	chrX	19811521	19812800	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	-12387	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
201759	chr6	149940221	149940800	+	0	NA	Intergenic	Intergenic	-1504	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
68048	chr14	75232501	75233450	+	0	NA	Intergenic	AluSq2|SINE|Alu	-45853	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
6326	chr1	27666151	27666750	+	0	NA	exon (NM_002038, exon 5 of 5)	exon (NM_002038, exon 5 of 5)	-3728	NR_151722	111216282		NR_151722	ENSG00000233975	LINC02574	HEAL	long intergenic non-protein coding RNA 2574	ncRNA
109321	chr19	586821	587500	+	0	NA	Intergenic	L2a|LINE|L2	-2721	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
18463	chr1	161566071	161566580	+	0	NA	Intergenic	Intergenic	-15014	NM_201563	9103		NM_201563		FCGR2C	CD32|CD32C|CDW32|FCG2|FCRIIC|FcgammaRIIc|IGFR2	Fc gamma receptor IIc (gene/pseudogene)	protein-coding
89441	chr16	88967921	88968730	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	8882	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
62185	chr13	97460921	97461180	+	0	NA	intron (NM_021033, intron 1 of 1)	MIRc|SINE|MIR	26881	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
120152	chr19	42230151	42230550	+	0	NA	3' UTR (NM_019884, exon 11 of 11)	3' UTR (NM_019884, exon 11 of 11)	10038	NM_001314033	116115		NM_133444	ENSG00000167625	ZNF526	DENNED	zinc finger protein 526	protein-coding
197087	chr6	56902821	56903100	+	0	NA	intron (NM_001374736, intron 2 of 103)	(TC)n|Simple_repeat|Simple_repeat	-51055	NM_001144770	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
135270	chr2	159775801	159776300	+	0	NA	intron (NM_014880, intron 5 of 5)	AluSx|SINE|Alu	22158	NM_014880	9936		NM_014880	ENSG00000241399	CD302	BIMLEC|CLEC13A|DCL-1|DCL1	CD302 molecule	protein-coding
176945	chr4	103018071	103018840	+	0	NA	3' UTR (NM_001370201, exon 13 of 13)	3' UTR (NM_001370201, exon 13 of 13)	1250	NR_047515	150159		NM_139173	ENSG00000164037	SLC9B1	NHA1|NHEDC1	solute carrier family 9 member B1	protein-coding
174804	chr4	48115971	48116130	+	0	NA	intron (NM_003328, intron 1 of 14)	MIRb|SINE|MIR	18200	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
124764	chr2	7031351	7032100	+	0	NA	intron (NM_001349181, intron 8 of 9)	intron (NM_001349181, intron 8 of 9)	46155	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
39889	chr11	62498871	62499630	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	46414	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
49817	chr12	31985771	31985930	+	0	NA	exon (NM_018169, exon 4 of 6)	exon (NM_018169, exon 4 of 6)	26435	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
175090	chr4	54108001	54108600	+	0	NA	Intergenic	Intergenic	8137	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
238002	chrX	134805401	134805800	+	0	NA	intron (NR_158603, intron 1 of 9)	MIRc|SINE|MIR	1478	NR_158603	159091		NM_138819	ENSG00000156500	PABIR3	FAM122C	PABIR family member 3	protein-coding
79516	chr16	802551	803180	+	0	NA	Intergenic	Intergenic	-2131	NM_016541	51764		NM_016541	ENSG00000127588	GNG13	G(gamma)13|HG3J|h2-35	G protein subunit gamma 13	protein-coding
116643	chr19	18317251	18318980	+	0	NA	intron (NM_012321, intron 1 of 4)	intron (NM_012321, intron 1 of 4)	4961	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
76146	chr15	72628351	72628680	+	0	NA	intron (NR_135684, intron 2 of 3)	L2c|LINE|L2	8440	NR_135684	102723640		NR_135684	ENSG00000259783	LINC02259	-	long intergenic non-protein coding RNA 2259	ncRNA
110471	chr19	2018251	2018500	+	0	NA	Intergenic	AluY|SINE|Alu	-2661	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
216729	chr8	22440221	22441850	+	0	NA	promoter-TSS (NM_001243975)	promoter-TSS (NM_001243975)	-43	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
203700	chr7	1038051	1038150	+	0	NA	intron (NM_032350, intron 2 of 4)	SVA_F|Retroposon|SVA	-6446	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
126498	chr2	28404801	28405430	+	0	NA	intron (NM_005253, intron 2 of 3)	intron (NM_005253, intron 2 of 3)	-10443	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
105456	chr17	83024271	83024780	+	0	NA	intron (NR_135465, intron 4 of 13)	intron (NR_135465, intron 4 of 13)	-17528	NM_001320743	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
28226	chr10	45417401	45417800	+	0	NA	intron (NM_001256153, intron 4 of 13).2	intron (NM_001256153, intron 4 of 13).2	35521	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
198880	chr6	109455501	109456780	+	0	NA	promoter-TSS (NM_001159291)	promoter-TSS (NM_001159291)	-153	NM_001159291	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
37508	chr11	18521701	18521900	+	0	NA	intron (NM_006292, intron 1 of 9)	AluJb|SINE|Alu	5142	NM_006292	7251		NM_006292	ENSG00000074319	TSG101	TSG10|VPS23	tumor susceptibility 101	protein-coding
7435	chr1	32975001	32975400	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-10391	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
167237	chr3	128486571	128487230	+	0	NA	exon (NM_001145662, exon 2 of 6)	exon (NM_001145662, exon 2 of 6)	1021	NM_001145662	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
197314	chr6	72669401	72669600	+	0	NA	intron (NR_120503, intron 2 of 3)	MLT1A-int|LTR|ERVL-MaLR	39005	NR_120503	100507381		NR_120503		KCNQ5-IT1	-	KCNQ5 intronic transcript 1	ncRNA
96249	chr17	39834801	39835400	+	0	NA	intron (NM_183231, intron 1 of 5)	(GAGCCA)n|Simple_repeat|Simple_repeat	29088	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
219077	chr8	65829521	65830380	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	12114	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
57920	chr12	123531921	123532480	+	0	NA	intron (NM_178314, intron 1 of 6)	intron (NM_178314, intron 1 of 6)	1519	NM_001319243	353116		NM_178314	ENSG00000188026	RILPL1	GOSPEL|OPDM4|RLP1	Rab interacting lysosomal protein like 1	protein-coding
182478	chr5	62393271	62394030	+	0	NA	intron (NM_001348077, intron 8 of 11)	intron (NM_001348077, intron 8 of 11)	10255	NM_014473	27292		NM_014473	ENSG00000086189	DIMT1	DIM1|DIMT1L|HSA9761|HUSSY5	DIM1 rRNA methyltransferase and ribosome maturation factor	protein-coding
130423	chr2	85349551	85349650	+	0	NA	intron (NM_017750, intron 4 of 10)	intron (NM_017750, intron 4 of 10)	4928	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
25203	chr10	5697501	5697780	+	0	NA	intron (NM_017782, intron 1 of 20)	intron (NM_017782, intron 1 of 20)	12802	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
229405	chr9	121197351	121197950	+	0	NA	intron (NM_016322, intron 1 of 7)	intron (NM_016322, intron 1 of 7)	-3833	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
187826	chr5	146798221	146798480	+	0	NA	intron (NM_001271899, intron 2 of 9)	intron (NM_001271899, intron 2 of 9)	80407	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
95655	chr17	38099271	38099630	+	0	NA	intron (NR_164156, intron 1 of 5).2	intron (NR_164156, intron 1 of 5).2	21188	NR_164156	101929950		NR_164156		LOC101929950	-	puromycin-sensitive aminopeptidase-like protein	pseudo
159859	chr3	16599651	16599950	+	0	NA	intron (NM_001351, intron 1 of 10)	MIRc|SINE|MIR	4990	NM_001190811	1618		NM_001351	ENSG00000092345	DAZL	DAZH|DAZL1|DAZLA|SPGYLA	deleted in azoospermia like	protein-coding
1192	chr1	2241901	2242600	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	13931	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
232856	chr9	136793451	136794250	+	0	NA	TTS (NM_032928)	TTS (NM_032928)	-2488	NM_001039374	84960		NM_032874	ENSG00000213213	CCDC183	KIAA1984|PARF|bA216L13.7	coiled-coil domain containing 183	protein-coding
29107	chr10	68336601	68336800	+	0	NA	intron (NM_001322437, intron 1 of 9)	intron (NM_001322437, intron 1 of 9)	-3772	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
7762	chr1	36177171	36177330	+	0	NA	intron (NM_001286365, intron 7 of 15)	AluJb|SINE|Alu	21090	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
177563	chr4	119286371	119286680	+	0	NA	intron (NM_001371398, intron 16 of 16)	intron (NM_001371398, intron 16 of 16)	14120	NM_001001701	401152		NM_001001701	ENSG00000164096	C4orf3	ALN|HCVFTP1	chromosome 4 open reading frame 3	protein-coding
135543	chr2	162333921	162334350	+	0	NA	intron (NM_001330266, intron 2 of 8)	intron (NM_001330266, intron 2 of 8)	-9997	NM_012198	25801		NM_012198	ENSG00000115271	GCA	GCL	grancalcin	protein-coding
43322	chr11	76376701	76377450	+	0	NA	intron (NM_004705, intron 1 of 4)	L2a|LINE|L2	3890	NR_130898	5612		NM_004705	ENSG00000137492	THAP12	DAP4|P52rIPK|PRKRIR|THAP0	THAP domain containing 12	protein-coding
142576	chr20	5490801	5491130	+	0	NA	Intergenic	LTR75|LTR|ERVL	13631	NR_015406	149837		NR_015406	ENSG00000205181	LINC00654	-	long intergenic non-protein coding RNA 654	ncRNA
191810	chr6	14506721	14506980	+	0	NA	Intergenic	Intergenic	-221396	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
72650	chr15	38500471	38500630	+	0	NA	intron (NM_001128602, intron 12 of 15)	AluSz|SINE|Alu	46423	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
38321	chr11	44095511	44096550	+	0	NA	promoter-TSS (NM_000401)	promoter-TSS (NM_000401)	-167	NM_000401	2132		NM_000401	ENSG00000151348	EXT2	SOTV|SSMS	exostosin glycosyltransferase 2	protein-coding
50762	chr12	49024671	49025030	+	0	NA	exon (NM_003482, exon 50 of 55)	exon (NM_003482, exon 50 of 55)	-6074	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
168817	chr3	152223371	152224030	+	0	NA	Intergenic	L1PA15|LINE|L1	-18271	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
98222	chr17	46147151	46147800	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluJb|SINE|Alu	45307	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
222233	chr8	133095351	133095650	+	0	NA	intron (NM_003235, intron 42 of 47)	MIRb|SINE|MIR	7102	NM_001282964	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
64327	chr14	23665821	23666130	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	29611	NM_005794	10202		NM_005794	ENSG00000100867	DHRS2	HEP27|SDR25C1	dehydrogenase/reductase 2	protein-coding
210255	chr7	99395471	99395830	+	0	NA	TTS (NM_005720)	TTS (NM_005720)	12947	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
150577	chr21	43171851	43172150	+	0	NA	intron (NM_000394, intron 2 of 2).2	intron (NM_000394, intron 2 of 2).2	1764	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
190185	chr5	178202851	178203200	+	0	NA	Intergenic	Intergenic	-1508	NM_004499	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
201931	chr6	151416351	151416650	+	0	NA	intron (NM_001271937, intron 9 of 10)	AluSx|SINE|Alu	-24941	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
5295	chr1	25168211	25168350	+	0	NA	Intergenic	Intergenic	64222	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
189916	chr5	177367551	177367900	+	0	NA	exon (NM_001366618, exon 7 of 14)	exon (NM_001366618, exon 7 of 14)	9801	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
56506	chr12	116325071	116325530	+	0	NA	Intergenic	AluJr|SINE|Alu	-47607	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
102648	chr17	76052971	76053330	+	0	NA	intron (NR_048541, intron 7 of 14)	AluJb|SINE|Alu	506	NM_001260503	6730		NM_014230	ENSG00000167881	SRP68	SCN10	signal recognition particle 68	protein-coding
224537	chr9	19231971	19232400	+	0	NA	intron (NM_001330640, intron 1 of 32)	intron (NM_001330640, intron 1 of 32)	1492	NR_073201	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
119274	chr19	39539271	39540950	+	0	NA	promoter-TSS (NM_153232)	promoter-TSS (NM_153232)	51	NM_153232	163126		NM_153232	ENSG00000176396	EID2	CRI2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
67657	chr14	73095651	73095950	+	0	NA	intron (NM_021239, intron 6 of 18)	intron (NM_021239, intron 6 of 18)	37266	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
6113	chr1	27339821	27340080	+	0	NA	Intergenic	Intergenic	-2072	NM_032872	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
161887	chr3	45946751	45947280	+	0	NA	exon (NM_006564, exon 2 of 2)	exon (NM_006564, exon 2 of 2)	3551	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
44654	chr11	110337651	110337750	+	0	NA	Intergenic	MER41B|LTR|ERV1	-17414	NR_135100	105369486		NR_135100		LINC02732	-	long intergenic non-protein coding RNA 2732	ncRNA
170443	chr3	185905701	185905900	+	0	NA	Intergenic	L1ME3|LINE|L1	32214	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
207733	chr7	48084201	48084420	+	0	NA	Intergenic	AluY|SINE|Alu	-4293	NM_001287426	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
219393	chr8	70572821	70573080	+	0	NA	TTS (NM_014294)	TTS (NM_014294)	34719	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
94019	chr17	26939171	26939530	+	0	NA	Intergenic	AluSz6|SINE|Alu	149891	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
130231	chr2	84827971	84828430	+	0	NA	intron (NM_001080824, intron 4 of 5)	intron (NM_001080824, intron 4 of 5)	52884	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
91406	chr17	4697901	4698800	+	0	NA	intron (NM_001278241, intron 1 of 18)	L1MC4|LINE|L1	5787	NM_001278241	27043		NM_014389	ENSG00000141456	PELP1	MNAR|P160	proline, glutamate and leucine rich protein 1	protein-coding
176358	chr4	88462051	88462350	+	0	NA	exon (NM_016323, exon 4 of 23)	exon (NM_016323, exon 4 of 23)	5081	NM_016323	51191		NM_016323	ENSG00000138646	HERC5	CEB1|CEBP1	HECT and RLD domain containing E3 ubiquitin protein ligase 5	protein-coding
84131	chr16	29701601	29703330	+	0	NA	Intergenic	Intergenic	23285	NR_134536	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
27241	chr10	29590321	29590980	+	0	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	11696	NR_030634	100126327		NR_030634	ENSG00000216035	MIR938	MIRN938|hsa-mir-938	microRNA 938	ncRNA
196521	chr6	43772971	43773730	+	0	NA	intron (NM_001287044, intron 1 of 6)	intron (NM_001287044, intron 1 of 6)	1382	NM_001287044	7422		NM_003376	ENSG00000112715	VEGFA	L-VEGF|MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
88208	chr16	81821621	81821880	+	0	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	42459	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
13525	chr1	114778571	114779200	+	0	NA	intron (NM_025073, intron 3 of 4)	(CAAA)n|Simple_repeat|Simple_repeat	1800	NR_049742	80143		NM_025073	ENSG00000052723	SIKE1	SIKE	suppressor of IKBKE 1	protein-coding
212883	chr7	130876401	130876800	+	0	NA	TTS (NR_029503)	TTS (NR_029503)	210	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
215414	chr7	157592551	157593050	+	0	NA	intron (NM_130842, intron 16 of 21)	intron (NM_130842, intron 16 of 21)	-18378	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
56348	chr12	113048571	113049180	+	0	NA	Intergenic	Intergenic	-7855	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
186001	chr5	133861551	133861650	+	0	NA	Intergenic	Intergenic	-52077	NR_131252	105664404		NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
47324	chr12	1790951	1791950	+	0	NA	TTS (NM_172364)	TTS (NM_172364)	-28817	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
205290	chr7	10931471	10931630	+	0	NA	TTS (NM_002489)	TTS (NM_002489)	8603	NM_002489	4697		NM_002489	ENSG00000189043	NDUFA4	CI-9k|CI-MLRQ|COXFA4|MC4DN21|MISTR1|MLRQ|MRCAF1	NDUFA4 mitochondrial complex associated	protein-coding
149309	chr21	29000521	29001330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8048	NM_001320766	26046		NM_015565	ENSG00000198862	LTN1	C21orf10|C21orf98|RNF160|ZNF294	listerin E3 ubiquitin protein ligase 1	protein-coding
175523	chr4	74399671	74399830	+	0	NA	Intergenic	Intergenic	34605	NM_001432	2069		NM_001432	ENSG00000124882	EREG	EPR|ER|Ep	epiregulin	protein-coding
142772	chr20	11633051	11633230	+	0	NA	Intergenic	L1HS|LINE|L1	237575	NR_110635	728450		NR_110635	ENSG00000228422	LINC00687	C20orf61|dJ1012F16.1	long intergenic non-protein coding RNA 687	ncRNA
54773	chr12	94150421	94151080	+	0	NA	intron (NM_005761, intron 1 of 30)	intron (NM_005761, intron 1 of 30)	2173	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
153643	chr22	28791821	28793650	+	0	NA	Intergenic	AluSx3|SINE|Alu	7837	NM_001079539	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
84838	chr16	31119851	31120350	+	0	NA	intron (NM_032188, intron 1 of 10)	intron (NM_032188, intron 1 of 10)	2436	NM_032188	84148		NM_032188	ENSG00000103510	KAT8	LIGOWS|MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
185866	chr5	132556551	132557560	+	0	NA	promoter-TSS (NM_005732)	promoter-TSS (NM_005732)	78	NM_005732	10111		NM_005732	ENSG00000113522	RAD50	NBSLD|RAD502|hRad50	RAD50 double strand break repair protein	protein-coding
186334	chr5	134728971	134729130	+	0	NA	Intergenic	AluJr|SINE|Alu	-9498	NM_001745	819		NM_001745	ENSG00000164615	CAMLG	CAML|CDG2Z|GET2	calcium modulating ligand	protein-coding
180799	chr5	32298101	32298500	+	0	NA	intron (NM_001294344, intron 1 of 13)	intron (NM_001294344, intron 1 of 13)	14639	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
193902	chr6	31623951	31624280	+	0	NA	TTS (NR_002971)	TTS (NR_002971)	1036	NR_002971	677820		NR_002971	ENSG00000200816	SNORA38	ACA38	small nucleolar RNA, H/ACA box 38	snoRNA
92604	chr17	9616201	9616500	+	0	NA	intron (NM_145054, intron 8 of 13)	L1HS|LINE|L1	-29167	NM_153210	124739		NM_153210	ENSG00000154914	USP43	-	ubiquitin specific peptidase 43	protein-coding
90919	chr17	2596851	2598280	+	0	NA	intron (NM_000430, intron 1 of 10)	AluSg|SINE|Alu	3911	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
50566	chr12	48181251	48181750	+	0	NA	Intergenic	Intergenic	-2144	NM_001013635	387856		NM_001013635	ENSG00000177875	CCDC184	C12orf68	coiled-coil domain containing 184	protein-coding
129245	chr2	68364221	68364480	+	0	NA	promoter-TSS (NM_002664)	promoter-TSS (NM_002664)	-932	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
30531	chr10	79377851	79378350	+	0	NA	Intergenic	(GTGT)n|Simple_repeat|Simple_repeat	30631	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
104807	chr17	81801951	81802330	+	0	NA	Intergenic	Intergenic	-2010	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
234809	chrX	24053121	24053790	+	0	NA	Intergenic	L1PA11|LINE|L1	-1501	NM_001415	1968		NM_001415	ENSG00000130741	EIF2S3	EIF2|EIF2G|EIF2gamma|MEHMO|MRXSBRK|eIF-2gA|eIF2gX	eukaryotic translation initiation factor 2 subunit gamma	protein-coding
162048	chr3	46753121	46753380	+	0	NA	non-coding (NR_160552, exon 6 of 6)	non-coding (NR_160552, exon 6 of 6)	3605	NR_160552	100288960		NR_160552	ENSG00000293417	PRSS43P	PRSS43|TESSP3	serine protease 43, pseudogene	pseudo
207634	chr7	45030651	45030750	+	0	NA	intron (NM_001029835, intron 1 of 9)	AluJr|SINE|Alu	3066	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
208422	chr7	66754921	66755380	+	0	NA	promoter-TSS (NM_001287061)	promoter-TSS (NM_001287061)	-732	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
222421	chr8	134620971	134621300	+	0	NA	intron (NM_020863, intron 3 of 15)	intron (NM_020863, intron 3 of 15)	23064	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
218705	chr8	58583721	58584180	+	0	NA	3' UTR (NM_001144772, exon 31 of 31)	3' UTR (NM_001144772, exon 31 of 31)	30689	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
21402	chr1	205286601	205287130	+	0	NA	Intergenic	Intergenic	29668	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
34810	chr11	282321	282800	+	0	NA	intron (NM_001276700, intron 4 of 7)	intron (NM_001276700, intron 4 of 7)	3990	NM_138329	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
37346	chr11	14893151	14893250	+	0	NA	promoter-TSS (NM_024514)	promoter-TSS (NM_024514)	-969	NM_024514	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
33660	chr10	119794721	119794980	+	0	NA	intron (NM_014937, intron 6 of 19)	SVA_D|Retroposon|SVA	-24407	NM_001243194	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
166455	chr3	114179601	114179800	+	0	NA	promoter-TSS (NM_000796)	promoter-TSS (NM_000796)	-648	NM_033663	1814		NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
193652	chr6	30882371	30883450	+	0	NA	5' UTR (NM_001297652, exon 1 of 17).2	5' UTR (NM_001297652, exon 1 of 17).2	297	NM_001297652	780		NM_001954	ENSG00000204580	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
35066	chr11	605271	606050	+	0	NA	exon (NM_001286581, exon 12 of 18).2	exon (NM_001286581, exon 12 of 18).2	10290	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
153744	chr22	29314971	29316280	+	0	NA	promoter-TSS (NM_006477)	promoter-TSS (NM_006477)	72	NM_006477	10633		NM_006477	ENSG00000100276	RASL10A	RRP22	RAS like family 10 member A	protein-coding
112515	chr19	6480971	6482730	+	0	NA	promoter-TSS (NM_001290331)	promoter-TSS (NM_001290331)	-63	NM_024898	79958		NM_024898	ENSG00000205744	DENND1C	FAM31C	DENN domain containing 1C	protein-coding
152595	chr22	21324571	21325030	+	0	NA	intron (NR_136559, intron 1 of 11)	HSATI|Satellite|Satellite	1836	NR_136559	100996335		NR_136559	ENSG00000206142	FAM230H	-	family with sequence similarity 230 member H	ncRNA
100309	chr17	59825621	59826250	+	0	NA	intron (NM_030938, intron 10 of 11)	intron (NM_030938, intron 10 of 11)	-15331	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
118137	chr19	34985401	34985850	+	0	NA	Intergenic	L1MEd|LINE|L1	-9102	NM_001320036	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
6273	chr1	27593171	27593330	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	10244	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
79224	chr16	368451	368550	+	0	NA	intron (NM_006428, intron 4 of 5)	intron (NM_006428, intron 4 of 5)	2038	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
139434	chr2	223090321	223090400	+	0	NA	Intergenic	Intergenic	38170	NM_080671	23704		NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding
230307	chr9	127956851	127957150	+	0	NA	intron (NM_001035254, intron 1 of 10)	AluSz6|SINE|Alu	-6286	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
56702	chr12	120088871	120089530	+	0	NA	intron (NR_147894, intron 7 of 8)	intron (NR_147894, intron 7 of 8)	27553	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
39414	chr11	60855521	60856380	+	0	NA	promoter-TSS (NM_004778)	promoter-TSS (NM_004778)	0	NM_004778	11251		NM_004778	ENSG00000183134	PTGDR2	CD294|CRTH2|DL1R|DP2|GPR44	prostaglandin D2 receptor 2	protein-coding
9388	chr1	47339521	47339880	+	0	NA	intron (NM_001136140, intron 1 of 4)	AluSx1|SINE|Alu	5910	NM_016308	51727		NM_016308	ENSG00000162368	CMPK1	CK|CMK|CMPK|UMK|UMP-CMPK|UMPK	cytidine/uridine monophosphate kinase 1	protein-coding
33695	chr10	120732801	120733000	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	118279	NR_033850	283089		NR_033850	ENSG00000227165	WDR11-DT	WDR11-AS1	WDR11 divergent transcript	ncRNA
186280	chr5	134543621	134544530	+	0	NA	intron (NM_001289985, intron 3 of 11)	intron (NM_001289985, intron 3 of 11)	17967	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
51039	chr12	49765021	49765430	+	0	NA	TTS (NM_003217)	TTS (NM_003217)	23416	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
55031	chr12	96387501	96388380	+	0	NA	intron (NM_002595, intron 1 of 16)	AluJb|SINE|Alu	12499	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
32227	chr10	101820671	101821230	+	0	NA	intron (NR_045118, intron 1 of 2)	AluSg|SINE|Alu	1882	NR_045118	100289509		NR_045118		KCNIP2-AS1	-	KCNIP2 antisense RNA 1	ncRNA
207116	chr7	42110521	42110780	+	0	NA	intron (NM_000168, intron 3 of 14)	intron (NM_000168, intron 3 of 14)	126559	NM_000168	2737		NM_000168	ENSG00000106571	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
119992	chr19	41916871	41917100	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	11464	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
159912	chr3	16936101	16936800	+	0	NA	intron (NM_015184, intron 1 of 5)	intron (NM_015184, intron 1 of 5)	3254	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
28514	chr10	50347501	50347750	+	0	NA	intron (NM_147156, intron 6 of 10)	intron (NM_147156, intron 6 of 10)	-96109	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
182795	chr5	68711221	68712150	+	0	NA	Intergenic	Intergenic	318242	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
173781	chr4	17581471	17581830	+	0	NA	intron (NM_015907, intron 2 of 12)	intron (NM_015907, intron 2 of 12)	4452	NM_015907	51056		NM_015907	ENSG00000002549	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
183544	chr5	80105851	80106350	+	0	NA	Intergenic	Intergenic	-22435	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
107610	chr18	48924201	48924880	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	18267	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
161702	chr3	43583801	43584280	+	0	NA	intron (NM_001204833, intron 2 of 10)	intron (NM_001204833, intron 2 of 10)	37886	NM_001346467	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
204169	chr7	2419601	2419800	+	0	NA	intron (NM_018641, intron 1 of 1)	AluSq|SINE|Alu	16089	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
134167	chr2	134249821	134250300	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-4012	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
47968	chr12	6875351	6876080	+	0	NA	TTS (NR_135083)	TTS (NR_135083)	-2412	NM_032641	84727		NM_032641	ENSG00000111671	SPSB2	GRCC9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding
126775	chr2	30256601	30256900	+	0	NA	intron (NM_030915, intron 2 of 2)	AluY|SINE|Alu	25216	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
7299	chr1	32400471	32401130	+	0	NA	Intergenic	Intergenic	-6359	NM_001143889	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
31550	chr10	97081501	97081940	+	0	NA	intron (NM_003061, intron 4 of 36)	intron (NM_003061, intron 4 of 36)	-21036	NR_038330	100505540		NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
195774	chr6	40475821	40476080	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	97613	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
159283	chr3	12970321	12970900	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-2880	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
38629	chr11	46350251	46350700	+	0	NA	intron (NM_001199266, intron 1 of 30)	(CCACC)n|Simple_repeat|Simple_repeat	3012	NM_001199268	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
72417	chr15	31440671	31441750	+	0	NA	Intergenic	CpG	114375	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
52665	chr12	56336071	56336230	+	0	NA	Intergenic	MIR|SINE|MIR	-2150	NM_014871	9924		NM_014871	ENSG00000135473	PAN2	USP52	poly(A) specific ribonuclease subunit PAN2	protein-coding
121154	chr19	46352121	46352380	+	0	NA	intron (NM_001204284, intron 1 of 11)	intron (NM_001204284, intron 1 of 11)	5163	NM_001204284	5536		NM_006247	ENSG00000011485	PPP5C	PP5|PPP5|PPT	protein phosphatase 5 catalytic subunit	protein-coding
111101	chr19	3200001	3200600	+	0	NA	intron (NM_020170, intron 5 of 14)	AluSx3|SINE|Alu	14370	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
104586	chr17	81391351	81391980	+	0	NA	Intergenic	Intergenic	-3792	NM_001377448	57597		NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
145537	chr20	44153501	44154040	+	0	NA	intron (NM_020433, intron 2 of 5)	intron (NM_020433, intron 2 of 5)	33418	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
67410	chr14	69810251	69810750	+	0	NA	Intergenic	Charlie15b|DNA|hAT-Charlie	-1260	NR_149012	100506358		NR_149012		LOC100506358	-	uncharacterized LOC100506358	ncRNA
20698	chr1	200623621	200623880	+	0	NA	Intergenic	AluY|SINE|Alu	-2999	NM_014875	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
102305	chr17	75350151	75350800	+	0	NA	intron (NM_203506, intron 2 of 4)	L2c|LINE|L2	55203	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
150599	chr21	43356751	43357050	+	0	NA	Intergenic	Intergenic	5449	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
206888	chr7	37688421	37688680	+	0	NA	intron (NM_001381946, intron 2 of 2)	intron (NM_001381946, intron 2 of 2)	4784	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
110519	chr19	2071351	2072050	+	0	NA	3' UTR (NM_130807, exon 5 of 5)	3' UTR (NM_130807, exon 5 of 5)	-20456	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
100003	chr17	57857801	57858230	+	0	NA	Intergenic	Intergenic	-7971	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
239410	chrY	26073351	26073450	+	0	NA	Intergenic	L1P1|LINE|L1	344910	NR_002176	474148		NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis expressed transcript, Y-linked 3B	ncRNA
44333	chr11	102411721	102411980	+	0	NA	intron (NM_052932, intron 2 of 4)	intron (NM_052932, intron 2 of 4)	40915	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
52690	chr12	56493871	56494380	+	0	NA	Intergenic	Intergenic	-5711	NM_001280798	27165		NM_013267	ENSG00000135423	GLS2	GA|GLS|LGA|hLGA	glutaminase 2	protein-coding
1957	chr1	6581621	6582350	+	0	NA	intron (NM_005341, intron 2 of 10)	G-rich|Low_complexity|Low_complexity	1991	NM_001278647	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
157822	chr22	47192251	47192550	+	0	NA	Intergenic	Intergenic	-153171	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
132016	chr2	100643721	100644680	+	0	NA	Intergenic	Intergenic	40461	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
195673	chr6	38166671	38167100	+	0	NA	Intergenic	Intergenic	-314711	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
123418	chr19	54094571	54095080	+	0	NA	3' UTR (NM_133168, exon 5 of 5).2	3' UTR (NM_133168, exon 5 of 5).2	7861	NM_001282350	126014		NM_130771	ENSG00000170909	OSCAR	PIGR3|PIgR-3	osteoclast associated Ig-like receptor	protein-coding
168254	chr3	141410771	141411760	+	0	NA	intron (NM_001376165, intron 3 of 4)	intron (NM_001376165, intron 3 of 4)	8251	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
9596	chr1	52145121	52145600	+	0	NA	intron (NM_004799, intron 1 of 18)	intron (NM_004799, intron 1 of 18)	3266	NM_004799	9372		NM_004799	ENSG00000157077	ZFYVE9	MADHIP|NSP|PPP1R173|SARA|SMADIP	zinc finger FYVE-type containing 9	protein-coding
12908	chr1	110524321	110524850	+	0	NA	Intergenic	Intergenic	-5410	NM_005549	3744		NM_005549	ENSG00000143105	KCNA10	Kcn1|Kv1.8	potassium voltage-gated channel subfamily A member 10	protein-coding
36642	chr11	7673401	7673600	+	0	NA	promoter-TSS (NR_126508)	promoter-TSS (NR_126508)	0	NM_016229	51700		NM_016229	ENSG00000166394	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
219099	chr8	65913051	65913150	+	0	NA	Intergenic	L1MA2|LINE|L1	-71036	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
79712	chr16	1313251	1313350	+	0	NA	intron (NM_194259, intron 2 of 7)	intron (NM_194259, intron 2 of 7)	3664	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
59182	chr13	22050851	22051350	+	0	NA	Intergenic	Intergenic	-159185	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
5439	chr1	25571451	25571980	+	0	NA	Intergenic	Intergenic	28109	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
123685	chr19	55008721	55009330	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	29239	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
46931	chr11	134331551	134332830	+	0	NA	intron (NM_138342, intron 1 of 19)	CpG	202	NM_001370463	89944		NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	galactosidase beta 1 like 2	protein-coding
91355	chr17	4530221	4530550	+	0	NA	intron (NM_001124758, intron 3 of 12)	intron (NM_001124758, intron 3 of 12)	24999	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
93803	chr17	20530971	20531130	+	0	NA	Intergenic	AluY|SINE|Alu	-26552	NR_029393	644945		NR_029393	ENSG00000291196	KRT16P3	KERSMCR	keratin 16 pseudogene 3	pseudo
18599	chr1	165630101	165632580	+	0	NA	intron (NM_004528, intron 1 of 5)	intron (NM_004528, intron 1 of 5)	106	NM_004528	4259		NM_004528	ENSG00000143198	MGST3	GST-3|GST-III	microsomal glutathione S-transferase 3	protein-coding
219142	chr8	66176771	66177830	+	0	NA	exon (NM_000756, exon 2 of 2)	exon (NM_000756, exon 2 of 2)	1164	NM_000756	1392		NM_000756	ENSG00000147571	CRH	CRF|CRH1	corticotropin releasing hormone	protein-coding
149003	chr21	14520421	14520700	+	0	NA	intron (NM_001256370, intron 3 of 8)	intron (NM_001256370, intron 3 of 8)	25755	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
237780	chrX	129779151	129779250	+	0	NA	promoter-TSS (NM_018990)	promoter-TSS (NM_018990)	-749	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
185898	chr5	132774401	132774700	+	0	NA	intron (NM_001098813, intron 1 of 9)	intron (NM_001098813, intron 1 of 9)	2689	NM_015146	23176		NM_015146	ENSG00000164402	SEPTIN8	SEP2|SEPT8|Septin-8	septin 8	protein-coding
61785	chr13	75312871	75313130	+	0	NA	intron (NM_001286659, intron 10 of 18)	intron (NM_001286659, intron 10 of 18)	72412	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
136925	chr2	189786651	189786950	+	0	NA	intron (NR_110332, intron 2 of 12)	AluSq2|SINE|Alu	2350	NM_001128143	5378		NM_000534	ENSG00000064933	PMS1	HNPCC3|MLH2|PMSL1|hPMS1	PMS1 homolog 1, mismatch repair system component	protein-coding
96587	chr17	40516631	40517500	+	0	NA	Intergenic	Intergenic	-15442	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
214206	chr7	148696971	148697900	+	0	NA	promoter-TSS (NM_001370661)	promoter-TSS (NM_001370661)	-321	NM_001370660	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
115430	chr19	15309971	15311530	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluSx1|SINE|Alu	21789	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
176671	chr4	100188951	100189050	+	0	NA	intron (NM_145244, intron 2 of 2)	intron (NM_145244, intron 2 of 2)	-1033	NR_125924	101929353		NR_125924	ENSG00000249710	DDIT4L-AS1	-	DDIT4L antisense RNA 1	ncRNA
125344	chr2	10863921	10864280	+	0	NA	Intergenic	MER90a|LTR|ERV1	-14167	NR_110575	101929733		NR_110575	ENSG00000271952	LINC01954	-	long intergenic non-protein coding RNA 1954	ncRNA
29601	chr10	71746621	71747200	+	0	NA	TTS (NM_022153)	TTS (NM_022153)	-9060	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
196345	chr6	43181851	43183300	+	0	NA	intron (NM_015089, intron 1 of 40)	intron (NM_015089, intron 1 of 40)	379	NM_015089	23113		NM_015089	ENSG00000112659	CUL9	H7AP1|PARC	cullin 9	protein-coding
190202	chr5	178215471	178216780	+	0	NA	intron (NM_153373, intron 8 of 12)	L1ME1|LINE|L1	11592	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
24664	chr1	247103801	247104980	+	0	NA	promoter-TSS (NR_147502)	promoter-TSS (NR_147502)	-18	NM_024804	79862		NM_024804	ENSG00000188295	ZNF669	-	zinc finger protein 669	protein-coding
196870	chr6	49551851	49551950	+	0	NA	non-coding (NR_146853, exon 2 of 4)	non-coding (NR_146853, exon 2 of 4)	1232	NM_001145652	135398		NM_153344	ENSG00000197261	C6orf141	-	chromosome 6 open reading frame 141	protein-coding
198556	chr6	106608121	106608450	+	0	NA	intron (NM_032730, intron 4 of 8)	L1MA5|LINE|L1	21213	NM_032730	84816		NM_032730	ENSG00000130347	RTN4IP1	NIMP|OPA10	reticulon 4 interacting protein 1	protein-coding
232669	chr9	136508951	136509250	+	0	NA	intron (NM_017617, intron 18 of 33)	intron (NM_017617, intron 18 of 33)	10526	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
102667	chr17	76085171	76085780	+	0	NA	intron (NM_001145297, intron 15 of 19)	intron (NM_001145297, intron 15 of 19)	6293	NM_180990	353174		NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding
23814	chr1	234401801	234402450	+	0	NA	intron (NM_005646, intron 24 of 29)	intron (NM_005646, intron 24 of 29)	28424	NM_001301733	388753		NM_001012985	ENSG00000168275	COA6	C1orf31|CEMCOX4|MC4DN13	cytochrome c oxidase assembly factor 6	protein-coding
159666	chr3	15367901	15368100	+	0	NA	Intergenic	Intergenic	-26620	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
430	chr1	1091471	1092380	+	0	NA	intron (NM_017891, intron 2 of 9)	intron (NM_017891, intron 2 of 9)	-17619	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
118269	chr19	35267301	35269200	+	0	NA	promoter-TSS (NM_207291)	promoter-TSS (NM_207291)	-712	NM_001321150	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
154417	chr22	35335521	35336580	+	0	NA	TTS (NR_037471)	TTS (NR_037471)	410	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
114497	chr19	12772371	12773050	+	0	NA	intron (NM_013312, intron 5 of 22)	intron (NM_013312, intron 5 of 22)	2842	NM_001100176	29911		NM_013312	ENSG00000095066	HOOK2	HK2	hook microtubule tethering protein 2	protein-coding
28135	chr10	43438671	43438830	+	0	NA	intron (NM_001355444, intron 1 of 3)	L1MB2|LINE|L1	1639	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
70571	chr14	102598951	102599250	+	0	NA	intron (NM_015156, intron 2 of 11)	intron (NM_015156, intron 2 of 11)	6451	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
232580	chr9	136386471	136386830	+	0	NA	intron (NM_003086, intron 12 of 22)	AluSp|SINE|Alu	11787	NM_003086	6621		NM_003086	ENSG00000165684	SNAPC4	NEDRSO|PTFalpha|SNAP190	small nuclear RNA activating complex polypeptide 4	protein-coding
85708	chr16	56608071	56608800	+	0	NA	promoter-TSS (NM_005953)	promoter-TSS (NM_005953)	-149	NM_005953	4502		NM_005953	ENSG00000125148	MT2A	MT-2|MT-II|MT2	metallothionein 2A	protein-coding
131700	chr2	97741571	97741730	+	0	NA	Intergenic	L3|LINE|CR1	8350	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
25522	chr10	7314451	7314780	+	0	NA	intron (NM_001029880, intron 4 of 20)	intron (NM_001029880, intron 4 of 20)	94726	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
204010	chr7	1885571	1885730	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	-41397	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
114511	chr19	12791001	12792000	+	0	NA	promoter-TSS (NM_002229)	promoter-TSS (NM_002229)	14	NM_002229	3726		NM_002229	ENSG00000171223	JUNB	AP-1	JunB proto-oncogene, AP-1 transcription factor subunit	protein-coding
208950	chr7	74179521	74180080	+	0	NA	intron (NM_022170, intron 1 of 6)	Charlie1a|DNA|hAT-Charlie	5444	NM_022170	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
87062	chr16	68355021	68355550	+	0	NA	intron (NR_165372, intron 16 of 19)	intron (NR_165372, intron 16 of 19)	44171	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
154591	chr22	36279971	36281330	+	0	NA	TTS (NM_002473)	TTS (NM_002473)	6257	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
57422	chr12	121850371	121850730	+	0	NA	intron (NM_002150, intron 7 of 13)	AluSx|SINE|Alu	8309	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
163889	chr3	52515651	52515750	+	0	NA	intron (NM_015136, intron 37 of 68)	intron (NM_015136, intron 37 of 68)	18157	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
67151	chr14	68741971	68742130	+	0	NA	Intergenic	Intergenic	51017	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
88186	chr16	81732321	81732580	+	0	NA	Intergenic	AluJr|SINE|Alu	-46841	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
104978	chr17	81991401	81991800	+	0	NA	intron (NR_045351, intron 3 of 14)	(TCCCTGTCCA)n|Simple_repeat|Simple_repeat	13971	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
10487	chr1	66370001	66370830	+	0	NA	intron (NM_001037340, intron 14 of 14)	MIRc|SINE|MIR	15880	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
84720	chr16	30896901	30897750	+	0	NA	intron (NM_001142544, intron 1 of 2)	MIR1_Amn|SINE|MIR	711	NM_001142544	1489		NM_001330	ENSG00000150281	CTF1	CT-1|CT1	cardiotrophin 1	protein-coding
114836	chr19	13827651	13828200	+	0	NA	intron (NM_023072, intron 11 of 12)	intron (NM_023072, intron 11 of 12)	8434	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
197251	chr6	70010871	70011230	+	0	NA	intron (NM_001858, intron 11 of 50)	L1HS|LINE|L1	144494	NM_001858	1310		NM_001858	ENSG00000082293	COL19A1	COL9A1L|D6S228E	collagen type XIX alpha 1 chain	protein-coding
187595	chr5	142868351	142868650	+	0	NA	intron (NR_046680, intron 1 of 5)	L2b|LINE|L2	410	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
133931	chr2	130416701	130417100	+	0	NA	non-coding (NR_046258, exon 6 of 6)	non-coding (NR_046258, exon 6 of 6)	11646	NR_046258	100216479		NR_046258		FAR2P2	-	fatty acyl-CoA reductase 2 pseudogene 2	pseudo
216538	chr8	21483971	21484400	+	0	NA	Intergenic	Intergenic	185946	NR_104677	101929172		NR_104677	ENSG00000254334	LINC03093	-	long intergenic non-protein coding RNA 3093	ncRNA
208600	chr7	72948401	72949480	+	0	NA	TTS (NM_001367610)	TTS (NM_001367610)	5823	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
200161	chr6	130517421	130517850	+	0	NA	Intergenic	Intergenic	80518	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
16633	chr1	155108751	155108850	+	0	NA	Intergenic	(CCTC)n|Simple_repeat|Simple_repeat	-19076	NM_182685	1942		NM_004428	ENSG00000169242	EFNA1	B61|ECKLG|EFL1|EPLG1|GMAN|LERK-1|LERK1|TNFAIP4	ephrin A1	protein-coding
145316	chr20	41073621	41073880	+	0	NA	intron (NM_003286, intron 3 of 20)	MIRb|SINE|MIR	44928	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
67858	chr14	74238871	74239100	+	0	NA	promoter-TSS (NM_182894)	promoter-TSS (NM_182894)	-464	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
217181	chr8	26312351	26312680	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	19299	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
108106	chr18	62131301	62131600	+	0	NA	intron (NM_176787, intron 14 of 30)	intron (NM_176787, intron 14 of 30)	55606	NM_176787	23556		NM_012327	ENSG00000197563	PIGN	MCAHS|MCAHS1|MCD4|MDC4|PIG-N	phosphatidylinositol glycan anchor biosynthesis class N	protein-coding
47094	chr12	640221	640480	+	0	NA	intron (NR_122124, intron 3 of 4)	MIR3|SINE|MIR	3286	NM_001294346	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
23037	chr1	226464401	226464600	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-56407	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
211063	chr7	102468651	102469180	+	0	NA	exon (NM_152892, exon 9 of 15)	exon (NM_152892, exon 9 of 15)	-2554	NR_039677	100616367		NR_039677	ENSG00000284596	MIR4467	-	microRNA 4467	ncRNA
95526	chr17	36553571	36554580	+	0	NA	intron (NM_024835, intron 2 of 13)	AluSx1|SINE|Alu	9156	NM_024835	79893		NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
225023	chr9	33140901	33141900	+	0	NA	intron (NM_001378495, intron 1 of 5)	AluSx1|SINE|Alu	-25548	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
13899	chr1	119712451	119713380	+	0	NA	intron (NM_006623, intron 1 of 11)	intron (NM_006623, intron 1 of 11)	981	NM_006623	26227		NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA	phosphoglycerate dehydrogenase	protein-coding
98503	chr17	47486871	47487030	+	0	NA	intron (NR_033934, intron 3 of 5)	L1M4|LINE|L1	5670	NR_033934	653479		NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
144590	chr20	35793821	35794550	+	0	NA	intron (NM_016436, intron 1 of 17)	AluSp|SINE|Alu	22170	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
138898	chr2	217993901	217994200	+	0	NA	Intergenic	Intergenic	15343	NR_135524	105373878		NR_135524	ENSG00000223923	TNS1-AS1	-	TNS1 antisense RNA 1	ncRNA
165129	chr3	71722821	71723080	+	0	NA	intron (NM_173359, intron 2 of 7)	MIRb|SINE|MIR	2452	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
224425	chr9	15286371	15286530	+	0	NA	intron (NM_152574, intron 1 of 19)	L1MC4|LINE|L1	20910	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
85342	chr16	50162701	50163600	+	0	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	9844	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
104301	chr17	80888051	80888350	+	0	NA	intron (NM_020761, intron 17 of 33)	AluJb|SINE|Alu	-82568	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
191429	chr6	10435001	10435200	+	0	NA	promoter-TSS (NR_027793)	promoter-TSS (NR_027793)	-278	NR_027793	221718		NM_152738		LINC00518	C6orf218|LENOX	long intergenic non-protein coding RNA 518	ncRNA
27958	chr10	42104201	42104400	+	0	NA	Intergenic	Intergenic	263745	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
11762	chr1	92356971	92357130	+	0	NA	intron (NM_024813, intron 11 of 12)	AluSx1|SINE|Alu	57991	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
199171	chr6	111749951	111750380	+	0	NA	intron (NM_002037, intron 3 of 13)	MSTA|LTR|ERVL-MaLR	8966	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
34458	chr10	132440171	132441230	+	0	NA	Intergenic	Intergenic	-4489	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
184460	chr5	100623701	100624000	+	0	NA	Intergenic	Intergenic	88476	NM_198507	345757		NM_198507	ENSG00000174132	FAM174A	HGS_RE408|NS5ATP6|TMEM157|UNQ1912	family with sequence similarity 174 member A	protein-coding
235638	chrX	48478371	48479150	+	0	NA	intron (NM_177439, intron 5 of 13)	intron (NM_177439, intron 5 of 13)	2561	NM_177439	24140		NM_012280	ENSG00000068438	FTSJ1	CDLIV|JM23|MRX44|MRX9|SPB1|TRMT7|XLID9	FtsJ RNA 2'-O-methyltransferase 1	protein-coding
18825	chr1	167660121	167660700	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	30178	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
104034	chr17	80129071	80129230	+	0	NA	Intergenic	L1MB7|LINE|L1	17978	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
93071	chr17	17506871	17507230	+	0	NA	intron (NM_148172, intron 5 of 6)	intron (NM_148172, intron 5 of 6)	-10655	NM_001199989	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
225329	chr9	34622021	34622780	+	0	NA	exon (NM_001017363, exon 5 of 7)	exon (NM_001017363, exon 5 of 7)	-1877	NM_001281425	11258		NM_007234	ENSG00000137100	DCTN3	DCTN-22|DCTN22	dynactin subunit 3	protein-coding
89057	chr16	88445971	88446780	+	0	NA	Intergenic	CpG	-6905	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
5402	chr1	25505201	25506300	+	0	NA	Intergenic	Intergenic	-37856	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
184791	chr5	111092151	111093700	+	0	NA	intron (NM_139281, intron 1 of 22)	intron (NM_139281, intron 1 of 22)	577	NM_139281	134430		NM_139281	ENSG00000134987	WDR36	GLC1G|TA-WDRP|TAWDRP|UTP21	WD repeat domain 36	protein-coding
165994	chr3	108100971	108101750	+	0	NA	Intergenic	Intergenic	-10329	NM_001777	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
8446	chr1	40688501	40688700	+	0	NA	TTS (NR_024567)	TTS (NR_024567)	-3104	NM_001142588	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
211369	chr7	104999801	105000330	+	0	NA	Intergenic	Intergenic	-8900	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
157795	chr22	46773471	46774200	+	0	NA	promoter-TSS (NM_001284305)	promoter-TSS (NM_001284305)	-92	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
117715	chr19	29293271	29293430	+	0	NA	intron (NR_040029, intron 9 of 9)	LTR33|LTR|ERVL	-80199	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
179824	chr5	465871	466530	+	0	NA	intron (NM_007277, intron 12 of 12)	intron (NM_007277, intron 12 of 12)	6765	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
193535	chr6	30598621	30599180	+	0	NA	Intergenic	AluJo|SINE|Alu	14568	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
40832	chr11	64996171	64996330	+	0	NA	intron (NM_138456, intron 1 of 2)	AluSx|SINE|Alu	721	NM_138456	116071		NM_138456	ENSG00000168062	BATF2	SARI	basic leucine zipper ATF-like transcription factor 2	protein-coding
147465	chr20	59042001	59044480	+	0	NA	promoter-TSS (NR_037929)	promoter-TSS (NR_037929)	-394	NR_037929	100533975		NR_037929		SLMO2-ATP5E	-	SLMO2-ATP5E readthrough	ncRNA
138866	chr2	216698901	216699100	+	0	NA	Intergenic	Intergenic	-3451	NM_000599	3488		NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
22613	chr1	223400901	223401100	+	0	NA	Intergenic	L1PA2|LINE|L1	7585	NM_152610	164127		NM_152610	ENSG00000178395	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
230801	chr9	129012121	129012380	+	0	NA	exon (NM_001287046, exon 6 of 12)	exon (NM_001287046, exon 6 of 12)	16081	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
8512	chr1	40952451	40952900	+	0	NA	Intergenic	Intergenic	-27021	NR_125440	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
70620	chr14	102805251	102806050	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	28171	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
43104	chr11	74987571	74987730	+	0	NA	promoter-TSS (NM_001367860)	promoter-TSS (NM_001367860)	-994	NM_001367863	10825		NM_006656	ENSG00000162139	NEU3	SIAL3	neuraminidase 3	protein-coding
230665	chr9	128709621	128709880	+	0	NA	intron (NM_001317926, intron 6 of 21)	AluSp|SINE|Alu	7247	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
44215	chr11	96312021	96312280	+	0	NA	intron (NM_032427, intron 1 of 4)	AluSx1|SINE|Alu	-29288	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
202533	chr6	158628001	158628200	+	0	NA	intron (NR_164859, intron 13 of 16)	intron (NR_164859, intron 13 of 16)	16643	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
65593	chr14	52146621	52146930	+	0	NA	Intergenic	L1PA11|LINE|L1	-77716	NM_007361	22795		NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
16354	chr1	154329421	154330150	+	0	NA	intron (NM_001367934, intron 1 of 26)	intron (NM_001367934, intron 1 of 26)	987	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
159698	chr3	15599501	15599930	+	0	NA	intron (NR_104315, intron 2 of 14)	L2b|LINE|L2	-1637	NM_001281723	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
119618	chr19	40783851	40784150	+	0	NA	non-coding (NR_037775, exon 7 of 10)	non-coding (NR_037775, exon 7 of 10)	5753	NM_016154	53916		NM_016154	ENSG00000167578	RAB4B	-	RAB4B, member RAS oncogene family	protein-coding
54253	chr12	84912751	84912950	+	0	NA	promoter-TSS (NM_182767)	promoter-TSS (NM_182767)	-21	NM_018057	55117		NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding
133759	chr2	127633001	127633600	+	0	NA	exon (NM_001080527, exon 39 of 47)	exon (NM_001080527, exon 39 of 47)	-12564	NM_001161415	2840		NM_005291	ENSG00000144230	GPR17	-	G protein-coupled receptor 17	protein-coding
147572	chr20	60821001	60821200	+	0	NA	Intergenic	Intergenic	256538	NR_039653	100616440		NR_039653	ENSG00000265617	MIR548AG2	-	microRNA 548ag-2	ncRNA
203757	chr7	1173871	1174250	+	0	NA	Intergenic	Intergenic	13275	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
49618	chr12	27940771	27941030	+	0	NA	Intergenic	Intergenic	29076	NM_198964	5744		NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
213348	chr7	135559971	135560130	+	0	NA	intron (NM_001329434, intron 1 of 42)	AluSx3|SINE|Alu	2133	NM_015135	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
174128	chr4	36223621	36223950	+	0	NA	intron (NR_146894, intron 2 of 32)	MLT1A|LTR|ERVL-MaLR	20154	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
237852	chrX	130113501	130113900	+	0	NA	Intergenic	AluSp|SINE|Alu	-2809	NM_001127197	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
63914	chr14	21941651	21941950	+	0	NA	Intergenic	Intergenic	-270783	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
5092	chr1	24744601	24745970	+	0	NA	promoter-TSS (NM_013943)	promoter-TSS (NM_013943)	-162	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
119485	chr19	40452071	40452430	+	0	NA	intron (NM_000713, intron 3 of 4)	L2a|LINE|L2	-7915	NM_203344	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
134239	chr2	134962001	134962400	+	0	NA	Intergenic	Intergenic	43378	NM_001320749	905		NM_001241	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
9858	chr1	54285051	54286030	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	49097	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
177914	chr4	130233401	130233700	+	0	NA	Intergenic	L1MC3|LINE|L1	-142811	NR_147186	105377420		NR_147186		LINC02479	-	long intergenic non-protein coding RNA 2479	ncRNA
204237	chr7	2544751	2546380	+	0	NA	intron (NM_152743, intron 3 of 13)	AluSx1|SINE|Alu	9959	NR_146879	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
182822	chr5	69182071	69182580	+	0	NA	Intergenic	LTR12|LTR|ERV1	-7258	NM_022909	64946		NM_022909	ENSG00000153044	CENPH	-	centromere protein H	protein-coding
43605	chr11	83171071	83171780	+	0	NA	intron (NM_015885, intron 8 of 15)	MIR3|SINE|MIR	14294	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
220857	chr8	103372471	103372630	+	0	NA	promoter-TSS (NM_001256099)	promoter-TSS (NM_001256099)	43	NM_001256099	115908		NM_138455	ENSG00000164932	CTHRC1	-	collagen triple helix repeat containing 1	protein-coding
101364	chr17	67223851	67224280	+	0	NA	intron (NM_001330447, intron 3 of 32)	MLT1K|LTR|ERVL-MaLR	-20711	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
238363	chrX	149912221	149912700	+	0	NA	Intergenic	AluSc|SINE|Alu	-15454	NR_102703	101410537		NR_102703		MAGEA8-AS1	-	MAGEA8 antisense RNA 1	ncRNA
223563	chr8	144261201	144261400	+	0	NA	TTS (NM_015201)	TTS (NM_015201)	1437	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
74056	chr15	52540101	52540300	+	0	NA	Intergenic	THE1C-int|LTR|ERVL-MaLR	-11150	NM_000259	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
214039	chr7	143345451	143346200	+	0	NA	intron (NR_046453, intron 16 of 21)	(CTGGG)n|Simple_repeat|Simple_repeat	16255	NM_014690	9715		NM_014690	ENSG00000159784	FAM131B	-	family with sequence similarity 131 member B	protein-coding
198471	chr6	106184671	106184830	+	0	NA	non-coding (NR_104403, exon 5 of 5)	non-coding (NR_104403, exon 5 of 5)	85809	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
206465	chr7	32942071	32943430	+	0	NA	intron (NR_003500, intron 1 of 5)	CpG	420	NR_003500	441212		NM_001039754	ENSG00000291146	RP9P	-	RP9 pseudogene	pseudo
30611	chr10	80195851	80197080	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	8026	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
107860	chr18	54836001	54836200	+	0	NA	intron (NM_004163, intron 1 of 5)	intron (NM_004163, intron 1 of 5)	7623	NM_004163	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
224359	chr9	7216271	7216630	+	0	NA	Intergenic	L1PA6|LINE|L1	458477	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
110880	chr19	2634151	2634450	+	0	NA	intron (NM_052847, intron 2 of 4)	MER20|DNA|hAT-Charlie	3585	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
8843	chr1	43348701	43349950	+	0	NA	exon (NM_005373, exon 10 of 12)	exon (NM_005373, exon 10 of 12)	-9656	NM_001255	991		NM_001255	ENSG00000117399	CDC20	CDC20A|OOMD14|OZEMA14|bA276H19.3|p55CDC	cell division cycle 20	protein-coding
121382	chr19	46869271	46869430	+	0	NA	intron (NM_004491, intron 1 of 6)	AluJb|SINE|Alu	8353	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
118185	chr19	35105071	35105930	+	0	NA	intron (NR_024562, intron 1 of 3)	(CAC)n|Simple_repeat|Simple_repeat	771	NR_024561	100128675		NR_024561	ENSG00000227392	HPN-AS1	-	HPN antisense RNA 1	ncRNA
229579	chr9	123347501	123347900	+	0	NA	Intergenic	(TGTGTGA)n|Simple_repeat|Simple_repeat	-8497	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
39132	chr11	48325101	48325300	+	0	NA	exon (NM_001004702, exon 1 of 1)	exon (NM_001004702, exon 1 of 1)	280	NM_001004702	256144		NM_001004702	ENSG00000176547	OR4C3	OR11-98	olfactory receptor family 4 subfamily C member 3	protein-coding
63844	chr14	21515051	21515150	+	0	NA	Intergenic	AluSg|SINE|Alu	-3760	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
28353	chr10	47047421	47047950	+	0	NA	Intergenic	Intergenic	135963	NM_001042358	26095		NM_015605	ENSG00000204179	PTPN20	CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1	protein tyrosine phosphatase non-receptor type 20	protein-coding
185134	chr5	119304251	119304780	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	-28660	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
26297	chr10	14961901	14962600	+	0	NA	intron (NR_147060, intron 1 of 2)	intron (NR_147060, intron 1 of 2)	2862	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
70956	chr14	104686171	104686330	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-3356	NM_032714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
83568	chr16	28127101	28127500	+	0	NA	intron (NM_001270940, intron 13 of 24)	intron (NM_001270940, intron 13 of 24)	-63586	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
150708	chr21	43723771	43724380	+	0	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	4946	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
136768	chr2	181432401	181432600	+	0	NA	Intergenic	L1PB2|LINE|L1	-24392	NM_001316312	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
42740	chr11	72703401	72703680	+	0	NA	intron (NM_001135190, intron 11 of 30)	intron (NM_001135190, intron 11 of 30)	3066	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
179046	chr4	165259501	165260100	+	0	NA	intron (NM_001161522, intron 3 of 13)	intron (NM_001161522, intron 3 of 13)	20223	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
2579	chr1	9804621	9805080	+	0	NA	intron (NM_014944, intron 1 of 17)	AluSg|SINE|Alu	19115	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
206572	chr7	35679921	35680930	+	0	NA	intron (NM_022373, intron 2 of 8)	AluJr|SINE|Alu	14710	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
151195	chr21	45093221	45093480	+	0	NA	intron (NM_001346688, intron 1 of 11)	intron (NM_001346688, intron 1 of 11)	18299	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
111115	chr19	3213551	3214480	+	0	NA	Intergenic	Intergenic	-10646	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
3355	chr1	15578951	15579880	+	0	NA	intron (NM_024758, intron 3 of 6)	MamRep1879|DNA|hAT-Tip100?	5636	NM_024758	79814		NM_024758	ENSG00000116771	AGMAT	-	agmatinase (putative)	protein-coding
83739	chr16	28621251	28621430	+	0	NA	intron (NM_177536, intron 1 of 5)	AluSz|SINE|Alu	2246	NM_177536	6817		NM_001055	ENSG00000196502	SULT1A1	HAST1/HAST2|P-PST|P-PST 1|PST|ST1A1|ST1A3|STP|STP1|TSPST1|ts-PST	sulfotransferase family 1A member 1	protein-coding
128312	chr2	54649201	54650050	+	0	NA	exon (NM_003128, exon 26 of 36)	exon (NM_003128, exon 26 of 36)	-75387	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133512	chr2	120015401	120015980	+	0	NA	intron (NM_001184938, intron 1 of 16)	AluJr|SINE|Alu	2613	NM_001330307	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
102311	chr17	75362551	75363250	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	42778	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
175158	chr4	55554421	55554830	+	0	NA	Intergenic	Intergenic	-7716	NM_004898	9575		NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
114932	chr19	13966371	13967430	+	0	NA	intron (NM_002918, intron 12 of 20)	intron (NM_002918, intron 12 of 20)	-13508	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
143147	chr20	23979551	23979650	+	0	NA	Intergenic	Intergenic	7275	NM_178312	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
7583	chr1	35180751	35181380	+	0	NA	intron (NR_136702, intron 9 of 11)	intron (NR_136702, intron 9 of 11)	12080	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
145585	chr20	44519801	44520500	+	0	NA	intron (NM_006811, intron 1 of 9)	MER21B|LTR|ERVL	1920	NM_006811	10955		NM_006811	ENSG00000132824	SERINC3	AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1	serine incorporator 3	protein-coding
91880	chr17	7258201	7258600	+	0	NA	intron (NM_203413, intron 6 of 6)	AluSx|SINE|Alu	4078	NM_001307	1366		NM_001307	ENSG00000181885	CLDN7	CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1	claudin 7	protein-coding
10764	chr1	77217551	77217850	+	0	NA	intron (NM_005482, intron 1 of 10)	L2b|LINE|L2	1730	NM_005482	10026		NM_005482	ENSG00000142892	PIGK	GPI8|NEDHCAS	phosphatidylinositol glycan anchor biosynthesis class K	protein-coding
190028	chr5	177504621	177504880	+	0	NA	exon (NM_001375794, exon 5 of 6)	exon (NM_001375794, exon 5 of 6)	5076	NM_001384137	79930		NM_024872	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
185616	chr5	131462721	131463380	+	0	NA	TTS (NM_001164390)	TTS (NM_001164390)	172179	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
138962	chr2	218265051	218265500	+	0	NA	intron (NM_001302545, intron 9 of 10)	intron (NM_001302545, intron 9 of 10)	4260	NM_170699	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
140406	chr2	233093701	233093900	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	33458	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
81658	chr16	10970951	10971050	+	0	NA	intron (NM_001243403, intron 4 of 20)	intron (NM_001243403, intron 4 of 20)	26436	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
134494	chr2	143291801	143292000	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	162481	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
218711	chr8	58625971	58626130	+	0	NA	intron (NM_003580, intron 6 of 30)	L1PB2|LINE|L1	33357	NM_001144772	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
208264	chr7	65753151	65753450	+	0	NA	intron (NR_003110, intron 1 of 11)	AluSz|SINE|Alu	2195	NR_003110	643253		NR_003110	ENSG00000291124	CCT6P1	CCT6-5P|CCT6AP1	chaperonin containing TCP1 subunit 6 pseudogene 1	pseudo
25425	chr10	6570171	6570330	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	10026	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
136796	chr2	181570851	181571250	+	0	NA	intron (NM_001160277, intron 2 of 12)	intron (NM_001160277, intron 2 of 12)	86055	NM_201548	375298		NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding
41834	chr11	67094871	67095480	+	0	NA	Intergenic	Intergenic	23173	NR_160735	107984341		NR_160735		LOC107984341	-	uncharacterized LOC107984341	ncRNA
112501	chr19	6465271	6465930	+	0	NA	exon (NM_174881, exon 3 of 5)	exon (NM_174881, exon 3 of 5)	1329	NM_174881	92359		NM_139161	ENSG00000130545	CRB3	-	crumbs cell polarity complex component 3	protein-coding
3166	chr1	12619001	12619500	+	0	NA	Intergenic	Intergenic	-1040	NM_004753	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
131263	chr2	96058271	96058630	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-22476	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
122554	chr19	49654451	49654550	+	0	NA	intron (NM_021228, intron 8 of 10)	intron (NM_021228, intron 8 of 10)	-10642	NM_001282519	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
202000	chr6	152564101	152564300	+	0	NA	intron (NM_033071, intron 2 of 145)	intron (NM_033071, intron 2 of 145)	72651	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
180508	chr5	14347151	14347330	+	0	NA	intron (NR_134469, intron 11 of 56)	intron (NR_134469, intron 11 of 56)	-116743	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
211781	chr7	107578821	107579230	+	0	NA	promoter-TSS (NM_001371355).2	promoter-TSS (NM_001371355).2	-982	NM_001371355	55973		NM_018844	ENSG00000075790	BCAP29	B29|BAP29	B cell receptor associated protein 29	protein-coding
23944	chr1	235117971	235118130	+	0	NA	intron (NM_014765, intron 3 of 4)	intron (NM_014765, intron 3 of 4)	9887	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
76022	chr15	72101051	72101150	+	0	NA	intron (NM_006901, intron 1 of 41)	SVA_D|Retroposon|SVA	-13158	NM_001166340	123228		NM_145204	ENSG00000166192	SENP8	DEN1|NEDP1|PRSC2	SUMO peptidase family member, NEDD8 specific	protein-coding
29759	chr10	72222551	72223580	+	0	NA	intron (NM_001242546, intron 2 of 4)	intron (NM_001242546, intron 2 of 4)	-5931	NM_001369099	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
25373	chr10	6467351	6467450	+	0	NA	intron (NM_001282644, intron 12 of 17)	HERV17-int|LTR|ERV1	112876	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
90413	chr17	1339151	1339450	+	0	NA	Intergenic	AluSq|SINE|Alu	59638	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
125271	chr2	10446071	10446230	+	0	NA	TTS (NR_028374)	TTS (NR_028374)	699	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
123637	chr19	54630551	54631450	+	0	NA	intron (NM_001081637, intron 1 of 14)	intron (NM_001081637, intron 1 of 14)	483	NM_001278398	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
108067	chr18	59895751	59896480	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3881	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
191355	chr6	7153821	7154250	+	0	NA	intron (NM_001003698, intron 1 of 11)	MLT1I|LTR|ERVL-MaLR	46074	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
238069	chrX	136028401	136028830	+	0	NA	intron (NM_001330652, intron 13 of 16)	intron (NM_001330652, intron 13 of 16)	43180	NM_006359	10479		NM_006359	ENSG00000198689	SLC9A6	MRSA|MRXSCH|NHE6	solute carrier family 9 member A6	protein-coding
152407	chr22	20560351	20560650	+	0	NA	intron (NM_001003891, intron 5 of 17)	AluSc|SINE|Alu	52453	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
24165	chr1	235871451	235871750	+	0	NA	intron (NM_001301365, intron 1 of 52)	MER41C|LTR|ERV1	-4694	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
237956	chrX	132957271	132957630	+	0	NA	intron (NM_147175, intron 2 of 3)	CpG-30044	3920	NM_147175	90161		NM_147174	ENSG00000171004	HS6ST2	MRXSPM	heparan sulfate 6-O-sulfotransferase 2	protein-coding
221983	chr8	129997401	129997930	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	10788	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
109406	chr19	677251	678080	+	0	NA	intron (NM_005860, intron 1 of 4)	intron (NM_005860, intron 1 of 4)	1273	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
31089	chr10	89248571	89248730	+	0	NA	intron (NM_000235, intron 1 of 9)	AluY|SINE|Alu	3125	NM_000235	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
35081	chr11	620051	620430	+	0	NA	intron (NM_001171968, intron 8 of 14)	intron (NM_001171968, intron 8 of 14)	-4290	NM_004029	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
41017	chr11	65432821	65433380	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	10302	NR_131012	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
182926	chr5	70771451	70771750	+	0	NA	intron (NR_146391, intron 3 of 10).3	AluY|SINE|Alu	5036	NR_160659	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
57525	chr12	122136271	122136630	+	0	NA	intron (NM_014938, intron 11 of 16)	AluSz|SINE|Alu	-31269	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
221212	chr8	120811911	120812880	+	0	NA	promoter-TSS (NM_021021)	promoter-TSS (NM_021021)	-349	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
228913	chr9	113065701	113066600	+	0	NA	Intergenic	CpG	-9426	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
18747	chr1	167487371	167487530	+	0	NA	intron (NM_198053, intron 1 of 7)	MER91A|DNA|hAT-Tip100	31079	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
224053	chr9	3519901	3520200	+	0	NA	intron (NM_134428, intron 1 of 17)	AluJo|SINE|Alu	5951	NM_002919	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
28634	chr10	59622551	59622650	+	0	NA	Intergenic	Intergenic	87291	NM_001323979	220963		NM_194298	ENSG00000165449	SLC16A9	C10orf36|MCT9	solute carrier family 16 member 9	protein-coding
164159	chr3	56775571	56776180	+	0	NA	promoter-TSS (NM_001128616)	promoter-TSS (NM_001128616)	-158	NM_001377413	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
62643	chr13	101529551	101529730	+	0	NA	intron (NM_001271756, intron 1 of 9)	THE1C|LTR|ERVL-MaLR	39688	NM_001271756	9358		NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
137100	chr2	190960021	190960550	+	0	NA	intron (NM_014905, intron 17 of 17)	intron (NM_014905, intron 17 of 17)	53886	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
225455	chr9	35158621	35158880	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	-3259	NM_001371186	10497		NM_006377	ENSG00000198722	UNC13B	MUNC13|UNC13|Unc13h2|munc13-2	unc-13 homolog B	protein-coding
186015	chr5	133970571	133970730	+	0	NA	TTS (NR_134247)	TTS (NR_134247)	1961	NR_134247	105379183		NR_134247		LOC105379183	-	uncharacterized LOC105379183	ncRNA
36857	chr11	10406171	10406400	+	0	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	-44036	NM_001172431	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
24190	chr1	235953001	235953430	+	0	NA	Intergenic	L1MC2|LINE|L1	-69502	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
155809	chr22	39310401	39312900	+	0	NA	Intergenic	Intergenic	2261	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
98921	chr17	48610221	48612130	+	0	NA	promoter-TSS (NM_004502)	promoter-TSS (NM_004502)	-158	NM_004502	3217		NM_004502	ENSG00000260027	HOXB7	HHO.C1|HOX2|HOX2C|Hox-2.3	homeobox B7	protein-coding
237606	chrX	123971151	123971450	+	0	NA	intron (NM_001282418, intron 2 of 33)	AluSx|SINE|Alu	9594	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
203328	chr6	170209921	170210180	+	0	NA	Intergenic	Intergenic	49408	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
202281	chr6	157106771	157106930	+	0	NA	intron (NM_001371656, intron 7 of 20)	L1MC4a|LINE|L1	70423	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
228282	chr9	98077671	98078030	+	0	NA	intron (NM_018946, intron 3 of 5)	MIRc|SINE|MIR	21118	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
78049	chr15	90079871	90081000	+	0	NA	3' UTR (NM_198526, exon 5 of 5)	3' UTR (NM_198526, exon 5 of 5)	1772	NR_146321	109729181		NR_146321	ENSG00000259291	ZNF710-AS1	-	ZNF710 antisense RNA 1	ncRNA
50581	chr12	48350251	48351800	+	0	NA	promoter-TSS (NM_001365805)	promoter-TSS (NM_001365805)	-106	NM_001365805	121274		NM_152320	ENSG00000167528	ZNF641	-	zinc finger protein 641	protein-coding
214333	chr7	149321971	149322380	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	36894	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
3587	chr1	16218401	16218680	+	0	NA	Intergenic	Intergenic	-5888	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
16513	chr1	154927401	154927830	+	0	NA	intron (NM_006556, intron 3 of 4)	L2a|LINE|L2	9104	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
146116	chr20	48467601	48467930	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	107854	NR_026958	284749		NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
176727	chr4	101329921	101330380	+	0	NA	TTS (NR_031656)	TTS (NR_031656)	264	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
138616	chr2	209474051	209474150	+	0	NA	intron (NM_001375502, intron 1 of 14)	intron (NM_001375502, intron 1 of 14)	50053	NM_001375498	4133		NM_002374	ENSG00000078018	MAP2	MAP-2|MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
209297	chr7	75991921	75992550	+	0	NA	exon (NM_031925, exon 3 of 12)	exon (NM_031925, exon 3 of 12)	2360	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
127903	chr2	46296451	46298100	+	0	NA	promoter-TSS (NM_001430)	promoter-TSS (NM_001430)	-132	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
139299	chr2	219520571	219520730	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	6168	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
160151	chr3	20105371	20105780	+	0	NA	intron (NM_003884, intron 5 of 17)	AluJo|SINE|Alu	-31990	NR_036086	100422901		NR_036086	ENSG00000266745	MIR3135A	MIR3135|hsa-mir-3135a	microRNA 3135a	ncRNA
238110	chrX	136634951	136636080	+	0	NA	Intergenic	Intergenic	-4028	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
226994	chr9	83622901	83624330	+	0	NA	intron (NR_046421, intron 1 of 3)	CpG	472	NR_046422	414328		NM_001001551	ENSG00000148057	IDNK	C9orf103|bA522I20.2|hGntK	IDNK gluconokinase	protein-coding
200514	chr6	135902101	135902300	+	0	NA	intron (NM_018945, intron 1 of 12)	intron (NM_018945, intron 1 of 12)	50499	NM_018945	27115		NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
212216	chr7	120805821	120806130	+	0	NA	intron (NM_012338, intron 7 of 7)	intron (NM_012338, intron 7 of 7)	52169	NM_012338	23554		NM_012338	ENSG00000106025	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
37004	chr11	11992301	11992500	+	0	NA	intron (NM_001018057, intron 3 of 6)	intron (NM_001018057, intron 3 of 6)	16239	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
166329	chr3	112849171	112849330	+	0	NA	Intergenic	L1PREC2|LINE|L1	-2394	NM_001370552	344807		NM_001008784	ENSG00000206531	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1 like	protein-coding
185962	chr5	133055121	133055600	+	0	NA	intron (NM_002154, intron 1 of 18)	intron (NM_002154, intron 1 of 18)	3347	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
179079	chr4	167234471	167234630	+	0	NA	promoter-TSS (NM_001204358)	promoter-TSS (NM_001204358)	40	NM_016950	50859		NM_016950	ENSG00000196104	SPOCK3	HSAJ1454|TES-3|TICN3	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	protein-coding
65072	chr14	39421001	39421530	+	0	NA	intron (NM_203301, intron 1 of 3)	intron (NM_203301, intron 1 of 3)	11235	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
110752	chr19	2342721	2342980	+	0	NA	intron (NM_152988, intron 8 of 14)	intron (NM_152988, intron 8 of 14)	14166	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
231180	chr9	129906621	129906880	+	0	NA	intron (NM_001363755, intron 12 of 15)	L1M5|LINE|L1	37145	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
134006	chr2	130964501	130964830	+	0	NA	intron (NM_001375902, intron 2 of 10)	intron (NM_001375902, intron 2 of 10)	1010	NM_001375904	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
168960	chr3	152383221	152383680	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-42460	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
127653	chr2	43155801	43156000	+	0	NA	Intergenic	Intergenic	-53455	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
147888	chr20	62873651	62874500	+	0	NA	Intergenic	LTR13|LTR|ERVK	8828	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
131686	chr2	97727151	97727450	+	0	NA	intron (NM_001079, intron 4 of 13)	intron (NM_001079, intron 4 of 13)	-6000	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
14798	chr1	146228351	146229230	+	0	NA	5' UTR (NM_001364006, exon 1 of 5)	5' UTR (NM_001364006, exon 1 of 5)	242	NM_203458	388677		NM_203458	ENSG00000264343	NOTCH2NLA	N2N|NOTCH2NL	notch 2 N-terminal like A	protein-coding
154638	chr22	36326371	36326950	+	0	NA	exon (NM_002473, exon 5 of 41)	exon (NM_002473, exon 5 of 41)	-39753	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
140094	chr2	231458321	231458580	+	0	NA	intron (NM_005381, intron 7 of 13)	intron (NM_005381, intron 7 of 13)	-1927	NR_002908	6082		NR_002908	ENSG00000207280	SNORD20	RNU20|U20	small nucleolar RNA, C/D box 20	snoRNA
114164	chr19	11354551	11354650	+	0	NA	promoter-TSS (NM_022737)	promoter-TSS (NM_022737)	-832	NM_001170635	64748		NM_022737	ENSG00000105520	PLPPR2	LPPR2|PRG4	phospholipid phosphatase related 2	protein-coding
130583	chr2	85843651	85844000	+	0	NA	intron (NM_001363847, intron 5 of 5)	intron (NM_001363847, intron 5 of 5)	10346	NM_001354248	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
216691	chr8	22162851	22163350	+	0	NA	exon (NM_003018, exon 3 of 6)	exon (NM_003018, exon 3 of 6)	1302	NM_001317779	6440		NM_003018	ENSG00000168484	SFTPC	BRICD6|PSP-C|SFTP2|SMDP2|SP-C|SP5	surfactant protein C	protein-coding
229546	chr9	122903251	122903940	+	0	NA	intron (NM_018835, intron 1 of 17)	intron (NM_018835, intron 1 of 17)	1764	NM_001354486	54542		NM_018835	ENSG00000056586	RC3H2	MNAB|RNF164	ring finger and CCCH-type domains 2	protein-coding
79172	chr16	296201	296400	+	0	NA	intron (NM_181050, intron 7 of 9)	intron (NM_181050, intron 7 of 9)	13136	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
220678	chr8	101202201	101202400	+	0	NA	intron (NM_001267709, intron 1 of 3)	AluSg7|SINE|Alu	3373	NM_016096	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
86955	chr16	68122521	68123000	+	0	NA	exon (NM_004555, exon 2 of 11)	exon (NM_004555, exon 2 of 11)	37390	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
93263	chr17	18030221	18030680	+	0	NA	intron (NM_145691, intron 1 of 7)	AluJr|SINE|Alu	8718	NM_145691	91647		NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|LP3663|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
20404	chr1	198184801	198185000	+	0	NA	intron (NM_133494, intron 1 of 9)	AluJr|SINE|Alu	27902	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
141238	chr2	239630251	239630930	+	0	NA	Intergenic	Intergenic	-132270	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
104315	chr17	80918171	80918530	+	0	NA	intron (NM_020761, intron 21 of 33)	intron (NM_020761, intron 21 of 33)	52863	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
67211	chr14	68936751	68937050	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	42402	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
191967	chr6	16147321	16147980	+	0	NA	3' UTR (NM_013262, exon 7 of 7)	3' UTR (NM_013262, exon 7 of 7)	6094	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
86437	chr16	66905551	66906080	+	0	NA	Intergenic	MIRb|SINE|MIR	13070	NM_001204744	1014		NM_004062	ENSG00000166589	CDH16	-	cadherin 16	protein-coding
173063	chr4	6152951	6153250	+	0	NA	intron (NM_144720, intron 1 of 12)	intron (NM_144720, intron 1 of 12)	41519	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
218442	chr8	47955201	47955600	+	0	NA	intron (NM_006904, intron 4 of 85)	AluYa5|SINE|Alu	4736	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
2829	chr1	11055671	11056480	+	0	NA	exon (NM_003132, exon 5 of 8)	exon (NM_003132, exon 5 of 8)	3943	NM_003132	6723		NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
73345	chr15	42084301	42084950	+	0	NA	intron (NM_178034, intron 6 of 19)	intron (NM_178034, intron 6 of 19)	9937	NM_178034	283748		NM_178034	ENSG00000159337	PLA2G4D	cPLA2delta	phospholipase A2 group IVD	protein-coding
201716	chr6	149744501	149744700	+	0	NA	intron (NM_198887, intron 2 of 7)	AluSg|SINE|Alu	1929	NR_104456	348995		NM_024647	ENSG00000120253	NUP43	bA350J20.1|p42	nucleoporin 43	protein-coding
189731	chr5	176546721	176547000	+	0	NA	intron (NM_001171976, intron 1 of 31)	intron (NM_001171976, intron 1 of 31)	-2482	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
52164	chr12	54289521	54290830	+	0	NA	Intergenic	Intergenic	5604	NM_006163	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
48363	chr12	9425721	9425980	+	0	NA	intron (NR_033399, intron 15 of 26)	intron (NR_033399, intron 15 of 26)	-18436	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
167102	chr3	127589831	127591800	+	0	NA	promoter-TSS (NM_001353001)	promoter-TSS (NM_001353001)	-82	NM_001142646	131601		NM_016372	ENSG00000163870	TPRA1	GPR175|TMEM227|TPRA40	transmembrane protein adipocyte associated 1	protein-coding
195145	chr6	35712921	35713630	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	15308	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
29279	chr10	69205251	69205450	+	0	NA	intron (NM_001301683, intron 14 of 15)	intron (NM_001301683, intron 14 of 15)	-14982	NM_025130	80201		NM_025130	ENSG00000156510	HKDC1	RP92	hexokinase domain containing 1	protein-coding
193806	chr6	31454751	31455050	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-8280	NR_040662	10866		NR_040662	ENSG00000206337	HCP5	6S2650E|D6S2650E|P5-1	HLA complex P5	ncRNA
126144	chr2	26182971	26183330	+	0	NA	intron (NM_001168241, intron 3 of 5)	intron (NM_001168241, intron 3 of 5)	2434	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
80683	chr16	3037951	3038280	+	0	NA	intron (NR_047572, intron 7 of 7)	MIRc|SINE|MIR	-1171	NM_001369667	146439		NM_001103175	ENSG00000162069	BICDL2	BICDR-2|BICDR2|CCDC64B	BICD family like cargo adaptor 2	protein-coding
119868	chr19	41447301	41447500	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	4244	NM_001130514	100170765		NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
109094	chr18	79965401	79966050	+	0	NA	intron (NM_001136180, intron 1 of 3)	L1MB7|LINE|L1	1082	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
11996	chr1	95041671	95041830	+	0	NA	intron (NM_001305242, intron 2 of 4)	intron (NM_001305242, intron 2 of 4)	-19846	NR_132786	101928098		NR_132786	ENSG00000230427	ALG14-AS1	-	ALG14 antisense RNA 1	ncRNA
7470	chr1	33100801	33101000	+	0	NA	intron (NM_001376724, intron 8 of 9)	AluSz6|SINE|Alu	18722	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
117701	chr19	28632601	28633030	+	0	NA	intron (NR_110759, intron 5 of 9)	intron (NR_110759, intron 5 of 9)	26127	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
77696	chr15	85664701	85665100	+	0	NA	intron (NM_007200, intron 13 of 36)	intron (NM_007200, intron 13 of 36)	44950	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
127754	chr2	43877551	43878300	+	0	NA	3' UTR (NM_001357321, exon 13 of 13)	3' UTR (NM_001357321, exon 13 of 13)	38954	NM_022437	64241		NM_022437	ENSG00000143921	ABCG8	GBD4|STSL|STSL1	ATP binding cassette subfamily G member 8	protein-coding
208786	chr7	73585251	73585630	+	0	NA	Intergenic	AluJo|SINE|Alu	-6861	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
230815	chr9	129033301	129033500	+	0	NA	Intergenic	MER49|LTR|ERV1	-3226	NR_138422	84895		NM_032809	ENSG00000148343	MIGA2	C9orf54|FAM73B	mitoguardin 2	protein-coding
49538	chr12	26195451	26195750	+	0	NA	promoter-TSS (NM_005086)	promoter-TSS (NM_005086)	27	NM_005086	8082		NM_005086	ENSG00000123096	SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
74128	chr15	55222551	55223680	+	0	NA	intron (NM_183236, intron 6 of 6)	intron (NM_183236, intron 6 of 6)	-26174	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
92105	chr17	7577301	7578130	+	0	NA	promoter-TSS (NR_002912)	promoter-TSS (NR_002912)	-240	NR_002912	26781		NR_002912	ENSG00000277985	SNORA67	RNU67|U67	small nucleolar RNA, H/ACA box 67	snoRNA
13422	chr1	114154771	114155180	+	0	NA	Intergenic	Intergenic	-1106	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
114505	chr19	12784201	12785960	+	0	NA	Intergenic	Intergenic	-2048	NR_049864	100847071		NR_049864	ENSG00000263800	MIR5684	-	microRNA 5684	ncRNA
85013	chr16	31529451	31529950	+	0	NA	TTS (NM_001318222)	TTS (NM_001318222)	1723	NM_001318222	51327		NM_016633	ENSG00000169877	AHSP	EDRF|ERAF	alpha hemoglobin stabilizing protein	protein-coding
227302	chr9	89417271	89417430	+	0	NA	intron (NM_001371201, intron 2 of 18)	intron (NM_001371201, intron 2 of 18)	62540	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
163767	chr3	52376601	52376800	+	0	NA	intron (NM_015512, intron 46 of 77)	L2a|LINE|L2	33308	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
112386	chr19	6068471	6069600	+	0	NA	intron (NM_000635, intron 1 of 17)	L2a|LINE|L2	41465	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
149530	chr21	33019051	33019380	+	0	NA	Intergenic	Intergenic	-6720	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
146733	chr20	50732951	50733050	+	0	NA	intron (NM_032521, intron 1 of 2)	intron (NM_032521, intron 1 of 2)	1420	NM_032521	84612		NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding
55540	chr12	105351701	105351900	+	0	NA	intron (NM_001145199, intron 2 of 5)	intron (NM_001145199, intron 2 of 5)	21109	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
153175	chr22	23832851	23833350	+	0	NA	intron (NM_003073, intron 7 of 8).2	intron (NM_003073, intron 7 of 8).2	5906	NM_001135751	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
193587	chr6	30688151	30688250	+	0	NA	promoter-TSS (NM_001134870).7	promoter-TSS (NM_001134870).7	-993	NM_001134870	170954		NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding
173369	chr4	7868351	7868450	+	0	NA	intron (NM_001371091, intron 4 of 17)	intron (NM_001371091, intron 4 of 17)	3908	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
172257	chr4	1397771	1398130	+	0	NA	Intergenic	Intergenic	8492	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
105419	chr17	82860001	82860930	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-20443	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
91133	chr17	3722401	3722600	+	0	NA	intron (NM_002208, intron 28 of 30)	AluSx1|SINE|Alu	-1403	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
168648	chr3	150384601	150385830	+	0	NA	Intergenic	Intergenic	-23083	NM_014779	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
161445	chr3	42083071	42083430	+	0	NA	Intergenic	Intergenic	-3950	NM_001349245	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
235417	chrX	45762501	45763480	+	0	NA	Intergenic	Intergenic	-15866	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
30040	chr10	73807001	73807200	+	0	NA	intron (NR_160744, intron 4 of 14)	intron (NR_160744, intron 4 of 14)	4498	NM_001330107	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
159816	chr3	16373421	16373930	+	0	NA	intron (NM_015150, intron 5 of 9)	intron (NM_015150, intron 5 of 9)	108463	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
119896	chr19	41552571	41553430	+	0	NA	intron (NM_001288773, intron 1 of 7)	PABL_A-int|LTR|ERV1	3482	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
92498	chr17	8881401	8882400	+	0	NA	intron (NM_001142633, intron 15 of 18)	intron (NM_001142633, intron 15 of 18)	-14223	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
74821	chr15	63483171	63484080	+	0	NA	Intergenic	L1M5|LINE|L1	-20886	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
49769	chr12	31804851	31805600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-12927	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
60567	chr13	41535371	41535530	+	0	NA	Intergenic	L1PA4|LINE|L1	32945	NR_049803	100847026		NR_049803	ENSG00000284584	MIR5006	-	microRNA 5006	ncRNA
159531	chr3	14435801	14436130	+	0	NA	intron (NM_001134367, intron 2 of 14)	MER102c|DNA|hAT-Charlie	33359	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
174553	chr4	40211421	40212230	+	0	NA	intron (NM_001278362, intron 2 of 3)	intron (NM_001278362, intron 2 of 3)	14794	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
57899	chr12	123453151	123453560	+	0	NA	Intergenic	Intergenic	-4784	NR_104103	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
232819	chr9	136723151	136724050	+	0	NA	TTS (NR_024543)	TTS (NR_024543)	2637	NR_002975	677824		NR_002975	ENSG00000280496	SNORA17B	ACA43|SNORA43	small nucleolar RNA, H/ACA box 17B	snoRNA
33194	chr10	113678771	113681280	+	0	NA	intron (NM_001227, intron 1 of 6)	CpG	113	NM_033339	840		NM_001227	ENSG00000165806	CASP7	CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3	caspase 7	protein-coding
167474	chr3	129121301	129122970	+	0	NA	promoter-TSS (NM_001204883)	promoter-TSS (NM_001204883)	15	NM_001204883	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
102817	chr17	76454451	76455300	+	0	NA	intron (NM_001166579, intron 1 of 6)	AluSg4|SINE|Alu	1524	NM_001166579	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
226129	chr9	63335271	63335510	+	0	NA	promoter-TSS (NR_002817)	promoter-TSS (NR_002817)	852	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
44155	chr11	96198001	96198200	+	0	NA	intron (NM_032427, intron 1 of 4)	L2c|LINE|L2	-143338	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
21505	chr1	205747071	205747780	+	0	NA	intron (NM_022731, intron 1 of 6)	intron (NM_022731, intron 1 of 6)	2757	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
166023	chr3	108387201	108387400	+	0	NA	intron (NM_014981, intron 39 of 41)	intron (NM_014981, intron 39 of 41)	75515	NM_001282557	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
179373	chr4	183455651	183456050	+	0	NA	Intergenic	Intergenic	11214	NM_017632	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
189609	chr5	175915551	175916080	+	0	NA	Intergenic	Intergenic	44237	NM_001008220	10814		NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
371	chr1	1030871	1031030	+	0	NA	intron (NM_198576, intron 2 of 35)	intron (NM_198576, intron 2 of 35)	-3043	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
69000	chr14	91490851	91491680	+	0	NA	intron (NR_158976, intron 2 of 16)	AluJo|SINE|Alu	19045	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
210031	chr7	94064671	94065050	+	0	NA	Intergenic	Intergenic	-60505	NM_001317739	10282		NM_005868	ENSG00000105829	BET1	HBET1|MDRP	Bet1 golgi vesicular membrane trafficking protein	protein-coding
100530	chr17	62483321	62483780	+	0	NA	intron (NM_001375269, intron 2 of 20)	AluSz|SINE|Alu	2437	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
119437	chr19	40394651	40394950	+	0	NA	exon (NM_181882, exon 7 of 7)	exon (NM_181882, exon 7 of 7)	-4619	NM_144685	147746		NM_144685	ENSG00000160396	HIPK4	-	homeodomain interacting protein kinase 4	protein-coding
146634	chr20	50197701	50198450	+	0	NA	Intergenic	Intergenic	-6006	NR_125739	101927559		NR_125739	ENSG00000277449	CEBPB-AS1	-	CEBPB antisense RNA 1	ncRNA
210304	chr7	99464271	99464680	+	0	NA	intron (NM_001003713, intron 1 of 3)	AluYf1|SINE|Alu	1692	NM_001198879	100526740		NM_001198879	ENSG00000248919	ATP5MF-PTCD1	ATP5J2-PTCD1	ATP5MF-PTCD1 readthrough	protein-coding
171348	chr3	196054571	196054900	+	0	NA	intron (NM_001313966, intron 15 of 16)	intron (NM_001313966, intron 15 of 16)	27355	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
138134	chr2	202301851	202301950	+	0	NA	intron (NM_015934, intron 13 of 14)	L2a|LINE|L2	8849	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
220351	chr8	99533821	99534280	+	0	NA	intron (NM_152564, intron 30 of 61)	intron (NM_152564, intron 30 of 61)	2680	NR_030329	693184		NR_030329	ENSG00000207804	MIR599	MIRN599|hsa-mir-599	microRNA 599	ncRNA
15247	chr1	149614301	149615150	+	0	NA	intron (NR_111950, intron 1 of 8)	intron (NR_111950, intron 1 of 8)	7713	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
88868	chr16	87692871	87693280	+	0	NA	intron (NM_020655, intron 4 of 4)	intron (NM_020655, intron 4 of 4)	72911	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
163510	chr3	51393621	51394150	+	0	NA	exon (NM_013286, exon 1 of 1)	exon (NM_013286, exon 1 of 1)	2600	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
68544	chr14	89306171	89306330	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	110983	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
204285	chr7	2660271	2660430	+	0	NA	intron (NM_025250, intron 13 of 13)	intron (NM_025250, intron 13 of 13)	-19172	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
22533	chr1	222138471	222138630	+	0	NA	Intergenic	Intergenic	-160030	NR_149057	105372950		NR_149057	ENSG00000238042	LINC02257	-	long intergenic non-protein coding RNA 2257	ncRNA
201133	chr6	142891571	142892400	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	53191	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
75100	chr15	64456951	64457250	+	0	NA	Intergenic	Intergenic	-3478	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
8060	chr1	38872601	38873930	+	0	NA	promoter-TSS (NR_135048)	promoter-TSS (NR_135048)	83	NM_012333	26292		NM_012333	ENSG00000214114	MYCBP	AMY-1	MYC binding protein	protein-coding
34940	chr11	443971	444330	+	0	NA	Intergenic	AluSg4|SINE|Alu	-2139	NM_001012302	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
189959	chr5	177427901	177428670	+	0	NA	intron (NM_001004105, intron 1 of 15)	intron (NM_001004105, intron 1 of 15)	1599	NM_002082	2870		NM_002082	ENSG00000198055	GRK6	GPRK6	G protein-coupled receptor kinase 6	protein-coding
74783	chr15	63269751	63270450	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-7450	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
117639	chr19	23686501	23687730	+	0	NA	promoter-TSS (NM_138330)	promoter-TSS (NM_138330)	97	NM_138330	171392		NM_138330	ENSG00000197372	ZNF675	TBZF|TIZ	zinc finger protein 675	protein-coding
209122	chr7	75038751	75039050	+	0	NA	intron (NM_148842, intron 10 of 10)	intron (NM_148842, intron 10 of 10)	34902	NM_030798	81554		NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
1674	chr1	3920451	3920600	+	0	NA	Intergenic	(CCCT)n|Simple_repeat|Simple_repeat	-20087	NR_040065	728716		NR_040065		LINC01346	-	long intergenic non-protein coding RNA 1346	ncRNA
75468	chr15	65884571	65885200	+	0	NA	intron (NM_004663, intron 4 of 4)	intron (NM_004663, intron 4 of 4)	15394	NM_001206836	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
3885	chr1	17015851	17016300	+	0	NA	Intergenic	Intergenic	-4147	NM_001141973	23400		NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9|SPG78	ATPase cation transporting 13A2	protein-coding
54113	chr12	76346951	76347300	+	0	NA	exon (NM_024685, exon 2 of 2)	exon (NM_024685, exon 2 of 2)	1290	NM_024685	79738		NM_024685	ENSG00000179941	BBS10	C12orf58	Bardet-Biedl syndrome 10	protein-coding
157926	chr22	49781601	49782200	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	42431	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
68052	chr14	75246651	75248150	+	0	NA	Intergenic	AluJb|SINE|Alu	-31428	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
90849	chr17	2357821	2358280	+	0	NA	intron (NM_001346700, intron 2 of 22)	intron (NM_001346700, intron 2 of 22)	20549	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
27440	chr10	31770371	31770950	+	0	NA	Intergenic	Intergenic	138266	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
76392	chr15	74623671	74623830	+	0	NA	intron (NM_001130028, intron 5 of 12)	intron (NM_001130028, intron 5 of 12)	7914	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
88161	chr16	81698151	81698450	+	0	NA	intron (NM_030629, intron 14 of 20)	intron (NM_030629, intron 14 of 20)	32946	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
235591	chrX	47579371	47579730	+	0	NA	intron (NM_133499, intron 5 of 12)	intron (NM_133499, intron 5 of 12)	-2886	NM_003254	7076		NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP|TIMP-1	TIMP metallopeptidase inhibitor 1	protein-coding
19143	chr1	171549821	171550080	+	0	NA	intron (NM_015172, intron 17 of 33)	intron (NM_015172, intron 17 of 33)	64420	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
187407	chr5	141940501	141940900	+	0	NA	3' UTR (NM_001142603, exon 13 of 13)	3' UTR (NM_001142603, exon 13 of 13)	16829	NM_014773	9812		NM_014773	ENSG00000081791	DELE1	DELE|DELE1(L)|KIAA0141	DAP3 binding cell death enhancer 1	protein-coding
28018	chr10	43203801	43204280	+	0	NA	intron (NM_001282862, intron 2 of 12)	intron (NM_001282862, intron 2 of 12)	25699	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
57656	chr12	122599921	122600000	+	0	NA	intron (NM_014708, intron 44 of 63)	AluJr|SINE|Alu	72711	NM_014708	9735		NM_014708	ENSG00000184445	KNTC1	ROD	kinetochore associated 1	protein-coding
130055	chr2	74453851	74453950	+	0	NA	Intergenic	L1ME4a|LINE|L1	-1123	NR_037849	100532735		NR_037849	ENSG00000274049	INO80B-WBP1	-	INO80B-WBP1 readthrough (NMD candidate)	ncRNA
81857	chr16	11624571	11625480	+	0	NA	Intergenic	Intergenic	-37559	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
104426	chr17	81071671	81072150	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	-11079	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
92733	chr17	14303511	14304200	+	0	NA	non-coding (NR_026880, exon 1 of 1)	non-coding (NR_026880, exon 1 of 1)	115	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
66507	chr14	61712151	61712500	+	0	NA	intron (NM_001243084, intron 1 of 14)	L2a|LINE|L2	14703	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
91705	chr17	6454501	6454700	+	0	NA	3' UTR (NM_031220, exon 20 of 20)	3' UTR (NM_031220, exon 20 of 20)	10145	NM_001195228	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
203263	chr6	169697171	169697580	+	0	NA	intron (NR_146876, intron 1 of 15)	LTR13|LTR|ERVK	4654	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
63883	chr14	21825201	21825780	+	0	NA	Intergenic	Intergenic	-154473	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
211302	chr7	103304601	103304800	+	0	NA	intron (NM_004279, intron 6 of 12)	AluSx3|SINE|Alu	7265	NM_004279	9512		NM_004279	ENSG00000105819	PMPCB	Beta-MPP|MAS1|MPP11|MPPB|MPPP52|P-52	peptidase, mitochondrial processing subunit beta	protein-coding
132353	chr2	105747951	105748700	+	0	NA	intron (NM_001004722, intron 1 of 3)	L2c|LINE|L2	3262	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
763	chr1	1510251	1510430	+	0	NA	Intergenic	Intergenic	-1822	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
87479	chr16	71746271	71746850	+	0	NA	intron (NM_001128, intron 17 of 22)	intron (NM_001128, intron 17 of 22)	11927	NR_003059	692111		NR_003059	ENSG00000223224	SNORD71	HBII-239|MIRN768|hsa-mir-768	small nucleolar RNA, C/D box 71	snoRNA
17424	chr1	156656701	156656900	+	0	NA	intron (NM_021948, intron 9 of 13)	intron (NM_021948, intron 9 of 13)	14683	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
228105	chr9	96522321	96522580	+	0	NA	intron (NR_147239, intron 12 of 14)	intron (NR_147239, intron 12 of 14)	44381	NM_001351569	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
78310	chr15	90929451	90930930	+	0	NA	promoter-TSS (NM_001039675)	promoter-TSS (NM_001039675)	10	NM_001039675	55898		NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|OOHE|SMAP-1|SMAP1|UNC-45A	unc-45 myosin chaperone A	protein-coding
239074	chrY	7326321	7328030	+	0	NA	intron (NR_028062, intron 3 of 7)	AluJo|SINE|Alu	53203	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
54326	chr12	89618171	89618730	+	0	NA	intron (NM_001366523, intron 11 of 21)	MIRb|SINE|MIR	90388	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
37192	chr11	14277671	14277830	+	0	NA	TTS (NM_012250)	TTS (NM_012250)	80735	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
128737	chr2	61886621	61887050	+	0	NA	intron (NM_006430, intron 1 of 13)	AluSp|SINE|Alu	-1556	NM_001371765	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
86089	chr16	57637401	57637800	+	0	NA	intron (NM_001145772, intron 1 of 14)	intron (NM_001145772, intron 1 of 14)	-1892	NM_001145774	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
106724	chr18	23502371	23504400	+	0	NA	promoter-TSS (NM_001318707)	promoter-TSS (NM_001318707)	-85	NM_001276342	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
43573	chr11	83068421	83068680	+	0	NA	intron (NM_014488, intron 1 of 5)	L2c|LINE|L2	2912	NM_001286061	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
108048	chr18	59272301	59272880	+	0	NA	exon (NM_013435, exon 2 of 3)	exon (NM_013435, exon 2 of 3)	864	NM_013435	30062		NM_013435	ENSG00000134438	RAX	MCOP3|MCOPS16|RAX1|RX	retina and anterior neural fold homeobox	protein-coding
143196	chr20	24931701	24932600	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-17119	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
8666	chr1	41892301	41893480	+	0	NA	intron (NR_038260, intron 1 of 2)	AluJb|SINE|Alu	26032	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
209279	chr7	75921751	75922250	+	0	NA	intron (NM_001367562, intron 2 of 16)	AluSz|SINE|Alu	6803	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
139277	chr2	219492801	219493350	+	0	NA	3' UTR (NM_005876, exon 41 of 41)	3' UTR (NM_005876, exon 41 of 41)	-3280	NM_001286811	100996693		NM_001286811	ENSG00000286095	SPEGNB	-	SPEG neighbor	protein-coding
119341	chr19	39969571	39972350	+	0	NA	promoter-TSS (NM_153001)	promoter-TSS (NM_153001)	-45	NM_153001	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
131328	chr2	96135041	96136930	+	0	NA	intron (NM_001002036, intron 2 of 8)	intron (NM_001002036, intron 2 of 8)	2451	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
72926	chr15	40405251	40406580	+	0	NA	exon (NM_001354598, exon 1 of 13)	exon (NM_001354598, exon 1 of 13)	120	NM_001159508	3712		NM_002225	ENSG00000128928	IVD	ACAD2|IVDH	isovaleryl-CoA dehydrogenase	protein-coding
63721	chr14	21205021	21205700	+	0	NA	non-coding (NR_038970, exon 1 of 1)	non-coding (NR_038970, exon 1 of 1)	143	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
25863	chr10	11245501	11245780	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	80610	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
179097	chr4	168481001	168481980	+	0	NA	promoter-TSS (NM_001378072)	promoter-TSS (NM_001378072)	-976	NM_001012967	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
223914	chr9	467621	468130	+	0	NA	Intergenic	Intergenic	-2416	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
181075	chr5	36729001	36729350	+	0	NA	Intergenic	Intergenic	122569	NM_004172	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
39676	chr11	61697901	61698100	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	17609	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
106623	chr18	22365771	22365950	+	0	NA	Intergenic	L1MA4|LINE|L1	52055	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
220800	chr8	102662051	102663150	+	0	NA	intron (NR_160672, intron 1 of 4)	intron (NR_160672, intron 1 of 4)	6352	NR_160673	101927245		NR_160672	ENSG00000283959	LOC101927245	-	uncharacterized LOC101927245	ncRNA
226272	chr9	68303221	68304080	+	0	NA	exon (NM_199135, exon 1 of 1)	exon (NM_199135, exon 1 of 1)	783	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
95154	chr17	35086171	35086330	+	0	NA	intron (NR_037713, intron 1 of 6)	AluJb|SINE|Alu	2976	NR_037713	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
2390	chr1	9455801	9456100	+	0	NA	Intergenic	Intergenic	-26954	NR_104622	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
187044	chr5	139851051	139851230	+	0	NA	intron (NM_013981, intron 9 of 9)	AluSx|SINE|Alu	55332	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
155966	chr22	39875311	39875450	+	0	NA	intron (NM_152512, intron 2 of 6)	intron (NM_152512, intron 2 of 6)	18380	NM_152512	150350		NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
192265	chr6	20367771	20368300	+	0	NA	Intergenic	Intergenic	-33844	NM_001949	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
213611	chr7	139423751	139424200	+	0	NA	TTS (NM_001270643)	TTS (NM_001270643)	3551	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
121639	chr19	47469601	47469950	+	0	NA	intron (NM_015063, intron 1 of 9)	intron (NM_015063, intron 1 of 9)	2118	NM_015063	6543		NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
36658	chr11	8022021	8022850	+	0	NA	Intergenic	Intergenic	-5926	NR_125366	103581031		NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility 23	ncRNA
98174	chr17	46097621	46098080	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	94932	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
175483	chr4	73187371	73187600	+	0	NA	intron (NM_032217, intron 1 of 33)	MER51B|LTR|ERV1	35572	NM_001286771	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
172814	chr4	3042751	3042850	+	0	NA	Intergenic	Intergenic	31714	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
187922	chr5	148852621	148853100	+	0	NA	Intergenic	AluSx1|SINE|Alu	26249	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
30117	chr10	74004471	74004830	+	0	NA	intron (NM_014000, intron 1 of 21)	intron (NM_014000, intron 1 of 21)	6534	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
40189	chr11	62920871	62921200	+	0	NA	intron (NM_000738, intron 1 of 1)	intron (NM_000738, intron 1 of 1)	328	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
174085	chr4	27381371	27381550	+	0	NA	Intergenic	L1PA2|LINE|L1	163981	NR_125921	101929199		NR_125921	ENSG00000249699	LINC02261	-	long intergenic non-protein coding RNA 2261	ncRNA
178408	chr4	147689671	147690030	+	0	NA	Intergenic	AluSg7|SINE|Alu	-5620	NM_001350142	90826		NM_138364	ENSG00000164169	PRMT9	PRMT10	protein arginine methyltransferase 9	protein-coding
123930	chr19	55369701	55370480	+	0	NA	intron (NM_000641, intron 1 of 4)	CpG	373	NM_001267718	3589		NM_000641	ENSG00000095752	IL11	AGIF|IL-11	interleukin 11	protein-coding
143168	chr20	24134721	24134980	+	0	NA	Intergenic	Intergenic	-64917	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
171605	chr3	197300751	197301880	+	0	NA	intron (NR_038289, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	-1994	NM_001366203	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
56352	chr12	113075221	113075500	+	0	NA	intron (NM_004416, intron 2 of 9)	MIRc|SINE|MIR	18630	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
33002	chr10	110572401	110572800	+	0	NA	intron (NM_005445, intron 2 of 28)	L1MC4|LINE|L1	4905	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
207159	chr7	43591671	43592250	+	0	NA	intron (NM_004760, intron 1 of 6)	intron (NM_004760, intron 1 of 6)	8852	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
89240	chr16	88642171	88643030	+	0	NA	TTS (NM_000101)	TTS (NM_000101)	4028	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
137157	chr2	191082301	191082500	+	0	NA	intron (NM_003151, intron 3 of 23)	Kanga1|DNA|TcMar-Tc2	60874	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
14433	chr1	144376751	144377200	+	0	NA	Intergenic	Intergenic	-3316	NM_001144032	730262		NM_001144032	ENSG00000271567	PPIAL4E	COAS2|PPIAL4F	peptidylprolyl isomerase A like 4E	protein-coding
6380	chr1	27881901	27882100	+	0	NA	exon (NM_001286113, exon 4 of 7)	exon (NM_001286113, exon 4 of 7)	9456	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
166590	chr3	119006951	119007280	+	0	NA	intron (NM_001353318, intron 1 of 7)	L1PA2|LINE|L1	27731	NM_001353326	152404		NM_152538	ENSG00000144847	IGSF11	BT-IgSF|BTIGSF|CT119|CXADRL1|Igsf13|VSIG3	immunoglobulin superfamily member 11	protein-coding
169793	chr3	174265151	174265250	+	0	NA	intron (NM_001365925, intron 4 of 6)	L1PA2|LINE|L1	-344404	NR_046664	100874010		NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA
232952	chr9	136945951	136946900	+	0	NA	intron (NM_000606, intron 4 of 6)	intron (NM_000606, intron 4 of 6)	1182	NM_000606	733		NM_000606	ENSG00000176919	C8G	C8C	complement C8 gamma chain	protein-coding
111903	chr19	4683051	4683630	+	0	NA	non-coding (NR_164163, exon 2 of 3)	non-coding (NR_164163, exon 2 of 3)	4058	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
136747	chr2	181303171	181303600	+	0	NA	intron (NR_130784, intron 3 of 4)	AluSc|SINE|Alu	2267	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
142451	chr20	3993151	3993450	+	0	NA	intron (NM_001134338, intron 1 of 6)	AluSx1|SINE|Alu	22258	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
206749	chr7	36678421	36679080	+	0	NA	intron (NM_001177507, intron 1 of 19)	MamRep605|LTR?|LTR?	45744	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
152450	chr22	20608451	20608550	+	0	NA	Intergenic	Intergenic	-81055	NR_024592	266697		NR_024592		POM121L4P	POM121L1|POM121L1P	POM121 transmembrane nucleoporin like 4, pseudogene	pseudo
62684	chr13	102680021	102680380	+	0	NA	TTS (NM_001330588)	TTS (NM_001330588)	14321	NM_001010977	196541		NM_001010977	ENSG00000139780	METTL21C	C13orf39	methyltransferase 21C, AARS1 lysine	protein-coding
110556	chr19	2108251	2108930	+	0	NA	intron (NM_001374799, intron 31 of 31)	intron (NM_001374799, intron 31 of 31)	11675	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
102254	chr17	75267551	75268080	+	0	NA	exon (NM_001370592, exon 4 of 6)	exon (NM_001370592, exon 4 of 6)	2430	NM_001242500	57409		NM_020679	ENSG00000125457	MIF4GD	AD023|MIFD|SLIP1	MIF4G domain containing	protein-coding
118202	chr19	35140301	35140500	+	0	NA	intron (NM_001278717, intron 2 of 7)	intron (NM_001278717, intron 2 of 7)	766	NM_001278718	5348		NM_005031	ENSG00000266964	FXYD1	PLM	FXYD domain containing ion transport regulator 1	protein-coding
171955	chr4	894101	894780	+	0	NA	intron (NM_001318134, intron 4 of 24)	intron (NM_001318134, intron 4 of 24)	37876	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
228564	chr9	101728201	101728400	+	0	NA	intron (NM_133445, intron 1 of 8)	intron (NM_133445, intron 1 of 8)	10347	NM_133445	116443		NM_133445	ENSG00000198785	GRIN3A	GluN3A|NMDAR-L|NMDAR3A|NR3A	glutamate ionotropic receptor NMDA type subunit 3A	protein-coding
233364	chr9	137466601	137467130	+	0	NA	intron (NM_001098537, intron 26 of 34)	CpG	-7531	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
190269	chr5	179344151	179344450	+	0	NA	intron (NM_014244, intron 1 of 21)	CpG-22923	1161	NM_014244	9509		NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	ADAM metallopeptidase with thrombospondin type 1 motif 2	protein-coding
65963	chr14	56150151	56150250	+	0	NA	intron (NM_021255, intron 1 of 5)	intron (NM_021255, intron 1 of 5)	31789	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
232602	chr9	136427251	136427350	+	0	NA	Intergenic	AluSx|SINE|Alu	12545	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
105571	chr18	96341	98150	+	0	NA	Intergenic	TAR1|Satellite|telo	-11820	NR_033770	727758		NR_033770	ENSG00000290877	ROCK1P1	ROCK1P	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
196481	chr6	43584751	43585600	+	0	NA	intron (NM_001291969, intron 2 of 8)	MER21B|LTR|ERVL	8990	NM_001291970	5429		NM_006502	ENSG00000170734	POLH	RAD30|RAD30A|XP-V|XPV	DNA polymerase eta	protein-coding
229742	chr9	125120951	125121250	+	0	NA	intron (NM_173690, intron 2 of 18)	intron (NM_173690, intron 2 of 18)	22428	NM_173690	286205		NM_173690	ENSG00000173611	SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
215070	chr7	154050551	154050850	+	0	NA	intron (NR_157195, intron 1 of 24)	intron (NR_157195, intron 1 of 24)	-1698	NM_130797	1804		NM_001936	ENSG00000130226	DPP6	DPL1|DPPX|MRD33|VF2	dipeptidyl peptidase like 6	protein-coding
11581	chr1	91547421	91547680	+	0	NA	Intergenic	Intergenic	46442	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
15589	chr1	150582871	150583030	+	0	NA	Intergenic	AluJb|SINE|Alu	-3212	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
111653	chr19	4207901	4208300	+	0	NA	intron (NM_133475, intron 10 of 21)	intron (NM_133475, intron 10 of 21)	-21423	NM_005755	10148		NM_005755	ENSG00000105246	EBI3	IL-27B|IL27B|IL35B	Epstein-Barr virus induced 3	protein-coding
155998	chr22	39927571	39928030	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	1196	NM_001291828	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
115918	chr19	16614401	16615000	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	13504	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
84517	chr16	30514551	30514850	+	0	NA	intron (NM_002209, intron 25 of 30)	AluSq|SINE|Alu	10781	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
49947	chr12	40103771	40104230	+	0	NA	intron (NM_052885, intron 1 of 9)	intron (NM_052885, intron 1 of 9)	2081	NM_052885	114134		NM_052885	ENSG00000151229	SLC2A13	HMIT	solute carrier family 2 member 13	protein-coding
132059	chr2	101205071	101205780	+	0	NA	Intergenic	Intergenic	-47461	NM_017546	55571		NM_017546	ENSG00000158435	CNOT11	C2orf29|C40	CCR4-NOT transcription complex subunit 11	protein-coding
202057	chr6	154166071	154166330	+	0	NA	intron (NM_001130700, intron 11 of 11)	intron (NM_001130700, intron 11 of 11)	76438	NM_001285527	4988		NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor mu 1	protein-coding
168305	chr3	141551021	141551600	+	0	NA	intron (NM_006506, intron 5 of 23)	L1MEc|LINE|L1	64283	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
169694	chr3	172054221	172054850	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	14004	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
51764	chr12	53301571	53301930	+	0	NA	intron (NM_021640, intron 2 of 6)	AluSx1|SINE|Alu	2055	NM_021640	60314		NM_021640	ENSG00000139637	MYG1	C12orf10|Gamm1|MST024|MSTP024|MYG	MYG1 exonuclease	protein-coding
141149	chr2	239237851	239238350	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-42643	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
77859	chr15	88895201	88896100	+	0	NA	promoter-TSS (NM_178232)	promoter-TSS (NM_178232)	-106	NM_178232	145864		NM_178232	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
189812	chr5	176961921	176962180	+	0	NA	intron (NM_001317961, intron 6 of 14)	SVA_F|Retroposon|SVA	44392	NM_016290	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
201512	chr6	149065901	149066650	+	0	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-33614	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
116175	chr19	17421821	17422080	+	0	NA	intron (NM_138401, intron 3 of 8)	AluSx1|SINE|Alu	1903	NM_138401	93343		NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
71477	chr14	105944771	105945400	+	0	NA	Intergenic	Intergenic	27106	NR_026800	9834		NM_014151	ENSG00000226777	FAM30A	C14orf110|HSPC053|KIAA0125	family with sequence similarity 30 member A	ncRNA
26464	chr10	17580251	17580350	+	0	NA	Intergenic	AluY|SINE|Alu	37074	NM_014241	9200		NM_014241	ENSG00000165996	HACD1	CAP|CMYP11|MYONP|PTPLA	3-hydroxyacyl-CoA dehydratase 1	protein-coding
121701	chr19	47576521	47576780	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3502	NM_001277075	84215		NM_032255	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
111754	chr19	4371521	4372280	+	0	NA	intron (NM_001199943, intron 1 of 8)	CpG	28338	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
48001	chr12	6921871	6922600	+	0	NA	intron (NM_001975, intron 10 of 11)	intron (NM_001975, intron 10 of 11)	-2224	NM_001007026	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
112628	chr19	6772101	6773100	+	0	NA	promoter-TSS (NM_001258207)	promoter-TSS (NM_001258207)	-108	NM_001258207	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
141092	chr2	238376971	238377280	+	0	NA	intron (NM_001139490, intron 13 of 14)	L1M5|LINE|L1	-49802	NM_001040445	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
180621	chr5	16619271	16619430	+	0	NA	intron (NR_109946, intron 1 of 3)	intron (NR_109946, intron 1 of 3)	-2292	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
23983	chr1	235214471	235215050	+	0	NA	intron (NM_016374, intron 16 of 23)	intron (NM_016374, intron 16 of 23)	-24644	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
61486	chr13	52457171	52457700	+	0	NA	intron (NM_001286687, intron 2 of 5)	intron (NM_001286687, intron 2 of 5)	1463	NM_001286686	26586		NM_018204	ENSG00000136108	CKAP2	LB1|TMAP|se20-10	cytoskeleton associated protein 2	protein-coding
208582	chr7	72899501	72899700	+	0	NA	intron (NM_172020, intron 2 of 13)	AluY|SINE|Alu	8973	NM_172020	9883		NM_014833	ENSG00000196313	POM121	P145|POM121A	POM121 transmembrane nucleoporin	protein-coding
222581	chr8	140634801	140636400	+	0	NA	promoter-TSS (NM_001164623)	promoter-TSS (NM_001164623)	33	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
238228	chrX	140733771	140733970	+	0	NA	intron (NR_104228, intron 2 of 3)	intron (NR_104228, intron 2 of 3)	24111	NR_104228	286411		NR_028344	ENSG00000203930	LINC00632	ARST|ASINC|BMOR|CDR1-AS|CDR1NAT|CDR1as|MDHDH|ciRS-7	long intergenic non-protein coding RNA 632	ncRNA
171861	chr4	742501	743350	+	0	NA	intron (NM_001317836, intron 7 of 11)	intron (NM_001317836, intron 7 of 11)	37093	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
198519	chr6	106523751	106524430	+	0	NA	intron (NM_001371242, intron 4 of 21)	intron (NM_001371242, intron 4 of 21)	12235	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
85196	chr16	46970321	46970850	+	0	NA	intron (NM_005880, intron 3 of 8)	AluSx1|SINE|Alu	3089	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
229597	chr9	123386251	123386350	+	0	NA	intron (NM_020946, intron 20 of 21)	intron (NM_020946, intron 20 of 21)	16303	NR_030332	693186		NR_030332	ENSG00000207991	MIR601	MIRN601|hsa-mir-601	microRNA 601	ncRNA
162106	chr3	46909201	46910250	+	0	NA	Intergenic	Intergenic	27476	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
63130	chr13	113435721	113436430	+	0	NA	intron (NM_138430, intron 2 of 6)	intron (NM_138430, intron 2 of 6)	13083	NM_199162	113622		NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
218832	chr8	59188001	59188200	+	0	NA	Intergenic	Intergenic	68890	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
191660	chr6	13429161	13430000	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	-21443	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
6850	chr1	31056951	31057050	+	0	NA	intron (NM_014676, intron 2 of 21)	AluSx|SINE|Alu	8717	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
184629	chr5	107364251	107364550	+	0	NA	Intergenic	Intergenic	306537	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
220214	chr8	96186601	96186830	+	0	NA	Intergenic	Intergenic	-25909	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
143072	chr20	21521271	21521430	+	0	NA	Intergenic	CpG	-7286	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
79636	chr16	1155701	1156100	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	2659	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
227781	chr9	93125721	93126930	+	0	NA	intron (NM_004148, intron 2 of 3)	intron (NM_004148, intron 2 of 3)	7926	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
80644	chr16	2994921	2995280	+	0	NA	TTS (NR_033861)	TTS (NR_033861)	-3855	NR_110948	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
27942	chr10	42075871	42076230	+	0	NA	Intergenic	Intergenic	291995	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
16704	chr1	155227201	155228580	+	0	NA	promoter-TSS (NR_002188)	promoter-TSS (NR_002188)	-356	NR_002188	2630		NR_002188	ENSG00000291137	GBA1LP	Beta-GC|GBA|GBAP|GBAP1|GC|GLUC	glucosylceramidase beta 1 like, pseudogene	pseudo
136592	chr2	178411601	178411800	+	0	NA	Intergenic	AluSg|SINE|Alu	-1959	NR_110205	101927027		NR_110204	ENSG00000223960	CHROMR	CHROME|PRKRA-AS1	cholesterol induced regulator of metabolism RNA	ncRNA
191589	chr6	12038801	12039000	+	0	NA	intron (NM_002114, intron 2 of 8)	MIRb|SINE|MIR	26588	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
171367	chr3	196077121	196077900	+	0	NA	intron (NM_001313966, intron 1 of 16)	AluSq|SINE|Alu	4580	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
50996	chr12	49644251	49645300	+	0	NA	TTS (NM_012272)	TTS (NM_012272)	21214	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
161769	chr3	44969001	44969800	+	0	NA	intron (NM_001135179, intron 1 of 6)	MIRb|SINE|MIR	6774	NR_146162	51304		NM_016598	ENSG00000163812	ZDHHC3	DHHC-3|DHHC3|GODZ|ZNF373	zinc finger DHHC-type palmitoyltransferase 3	protein-coding
204102	chr7	2124671	2125230	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-35898	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
34442	chr10	132422271	132422580	+	0	NA	Intergenic	Intergenic	-22764	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
209246	chr7	75878251	75879600	+	0	NA	promoter-TSS (NM_001040457)	promoter-TSS (NM_001040457)	-67	NM_001346189	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
88378	chr16	84604901	84605100	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	13078	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
152044	chr22	19523621	19524480	+	0	NA	exon (NM_001363067, exon 2 of 2)	exon (NM_001363067, exon 2 of 2)	360	NM_001363066	7122		NM_003277	ENSG00000184113	CLDN5	AWAL|BEC1|CPETRL1|TMDVCF|TMVCF	claudin 5	protein-coding
88667	chr16	85661551	85661850	+	0	NA	exon (NM_014615, exon 9 of 16)	exon (NM_014615, exon 9 of 16)	27254	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
197035	chr6	53342071	53342500	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	-4668	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
217212	chr8	26434671	26435030	+	0	NA	Intergenic	L1M5|LINE|L1	44437	NM_001330491	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
119525	chr19	40566901	40567100	+	0	NA	intron (NM_020971, intron 30 of 35)	intron (NM_020971, intron 30 of 35)	-9873	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
45853	chr11	119422271	119423330	+	0	NA	promoter-TSS (NM_001311160)	promoter-TSS (NM_001311160)	-12	NR_164077	7070		NM_006288	ENSG00000154096	THY1	CD90|CDw90	Thy-1 cell surface antigen	protein-coding
13920	chr1	120087801	120088400	+	0	NA	Intergenic	Intergenic	-18397	NM_001200001	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
200963	chr6	139249401	139249880	+	0	NA	intron (NM_153235, intron 7 of 9)	intron (NM_153235, intron 7 of 9)	42358	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
194261	chr6	32585451	32585550	+	0	NA	intron (NM_002124, intron 1 of 5)	intron (NM_002124, intron 1 of 5)	4336	NM_002124	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
217983	chr8	38373701	38374250	+	0	NA	intron (NM_017778, intron 1 of 9)	AluJb|SINE|Alu	8296	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
82269	chr16	15150751	15150850	+	0	NA	Intergenic	Intergenic	4202	NR_037466	100500852		NR_037466	ENSG00000264115	MIR3180-4	mir-3180-4	microRNA 3180-4	ncRNA
168667	chr3	150543451	150544150	+	0	NA	3' UTR (NM_014445, exon 3 of 3)	3' UTR (NM_014445, exon 3 of 3)	2696	NM_014445	27230		NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding
97946	chr17	45220751	45223200	+	0	NA	promoter-TSS (NR_147507)	promoter-TSS (NR_147507)	90	NM_005892	752		NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin like 1	protein-coding
133133	chr2	112666471	112667050	+	0	NA	Intergenic	Intergenic	20821	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
229411	chr9	121203951	121204250	+	0	NA	intron (NM_001353053, intron 1 of 25)	intron (NM_001353053, intron 1 of 25)	-2231	NM_016322	51552		NM_016322	ENSG00000119396	RAB14	FBP|RAB-14	RAB14, member RAS oncogene family	protein-coding
99559	chr17	50421371	50422850	+	0	NA	Intergenic	Intergenic	-4048	NM_001288968	80221		NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
54096	chr12	76080351	76082230	+	0	NA	intron (NM_139207, intron 1 of 15)	MIR|SINE|MIR	3395	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
145359	chr20	41150401	41151200	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-12800	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
40387	chr11	64005371	64005730	+	0	NA	intron (NM_014067, intron 4 of 10)	intron (NM_014067, intron 4 of 10)	19697	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
30319	chr10	75404151	75404450	+	0	NA	intron (NR_110302, intron 1 of 1)	CpG-3054	135	NR_110302	100131213		NR_024421	ENSG00000237149	ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	ncRNA
163748	chr3	52356571	52356730	+	0	NA	exon (NM_015512, exon 22 of 78)	exon (NM_015512, exon 22 of 78)	40331	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
55815	chr12	108831571	108832130	+	0	NA	intron (NM_001161330, intron 2 of 13)	intron (NM_001161330, intron 2 of 13)	-4299	NM_001161331	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
120017	chr19	41941121	41941450	+	0	NA	Intergenic	Intergenic	12465	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
2044	chr1	7782071	7782550	+	0	NA	TTS (NM_004781)	TTS (NM_004781)	-1981	NM_001289863	8863		NM_016831	ENSG00000049246	PER3	FASPS3|GIG13	period circadian regulator 3	protein-coding
232420	chr9	136090701	136091280	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	4299	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
120384	chr19	43663821	43664650	+	0	NA	intron (NM_002659, intron 3 of 6)	intron (NM_002659, intron 3 of 6)	5934	NM_001005377	5329		NM_002659	ENSG00000011422	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
61295	chr13	50224401	50224600	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	52482	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
203686	chr7	1024451	1024550	+	0	NA	TTS (NR_134538)	TTS (NR_134538)	-1474	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
149362	chr21	29302351	29302850	+	0	NA	intron (NM_206866, intron 1 of 4)	MIR|SINE|MIR	-2604	NR_027655	571		NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding
87600	chr16	74295921	74297580	+	0	NA	promoter-TSS (NM_002811)	promoter-TSS (NM_002811)	-64	NM_002811	5713		NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	proteasome 26S subunit, non-ATPase 7	protein-coding
18969	chr1	168833621	168834100	+	0	NA	Intergenic	Intergenic	46919	NR_024160	79100		NR_024160	ENSG00000225826	LINC00626	-	long intergenic non-protein coding RNA 626	ncRNA
187450	chr5	142116251	142116350	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	7521	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
119847	chr19	41399101	41399600	+	0	NA	intron (NM_001164783, intron 1 of 8)	(T)n|Simple_repeat|Simple_repeat	1532	NM_000709	593		NM_000709	ENSG00000248098	BCKDHA	BCKDE1A|MSU|MSUD1|MSUD1A|OVD1A	branched chain keto acid dehydrogenase E1 subunit alpha	protein-coding
103180	chr17	77444701	77446780	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-5009	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
124813	chr2	7588401	7588600	+	0	NA	Intergenic	Intergenic	167239	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
68583	chr14	89443371	89443530	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	26096	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
183095	chr5	74581051	74581350	+	0	NA	Intergenic	Intergenic	-44224	NR_126354	104310351		NR_126354	ENSG00000248673	LINC01331	-	long intergenic non-protein coding RNA 1331	ncRNA
105820	chr18	2966771	2966930	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	-20227	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
31437	chr10	95821871	95822030	+	0	NA	intron (NM_001312654, intron 2 of 9)	intron (NM_001312654, intron 2 of 9)	65787	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
61260	chr13	50071101	50071700	+	0	NA	intron (NR_152566, intron 3 of 13)	intron (NR_152566, intron 3 of 13)	10641	NR_152568	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
172081	chr4	1038151	1038980	+	0	NA	Intergenic	Intergenic	26101	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
199973	chr6	127978121	127978600	+	0	NA	intron (NM_001291981, intron 28 of 32).2	THE1C|LTR|ERVL-MaLR	-49505	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
74744	chr15	63208001	63208200	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	18494	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
145053	chr20	38430321	38430580	+	0	NA	promoter-TSS (NR_003017)	promoter-TSS (NR_003017)	-646	NR_003017	677839		NR_003017	ENSG00000201512	SNORA71C	U71c	small nucleolar RNA, H/ACA box 71C	snoRNA
167285	chr3	128643901	128644100	+	0	NA	intron (NM_002950, intron 2 of 9)	intron (NM_002950, intron 2 of 9)	6818	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
152922	chr22	22785871	22786380	+	0	NA	Intergenic	Intergenic	-36651	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
144455	chr20	35541051	35541150	+	0	NA	promoter-TSS (NM_015966)	promoter-TSS (NM_015966)	-978	NM_198398	51614		NM_015966	ENSG00000125991	ERGIC3	C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2	ERGIC and golgi 3	protein-coding
141176	chr2	239281071	239281230	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-24312	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
9559	chr1	51618601	51618800	+	0	NA	intron (NM_148906, intron 1 of 22)	intron (NM_148906, intron 1 of 22)	1608	NR_036662	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
48873	chr12	12467171	12467330	+	0	NA	3' UTR (NM_001300742, exon 4 of 4).2	3' UTR (NM_001300742, exon 4 of 4).2	95613	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
191948	chr6	16127571	16127980	+	0	NA	Intergenic	Intergenic	-1311	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
19184	chr1	172119451	172119550	+	0	NA	intron (NR_146559, intron 14 of 20)	L2a|LINE|L2	-19308	NR_036066	100422882		NR_036066	ENSG00000283152	MIR3120	mir-3120	microRNA 3120	ncRNA
190137	chr5	178075621	178076850	+	0	NA	Intergenic	Intergenic	-37297	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
120230	chr19	42318101	42318300	+	0	NA	intron (NM_173633, intron 12 of 14)	AluY|SINE|Alu	4891	NM_173633	284339		NM_173633	ENSG00000167619	TMEM145	-	transmembrane protein 145	protein-coding
67842	chr14	73949771	73950950	+	0	NA	promoter-TSS (NM_182476)	promoter-TSS (NM_182476)	58	NM_182476	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
59839	chr13	30457771	30458680	+	0	NA	3' UTR (NM_002128, exon 5 of 5)	3' UTR (NM_002128, exon 5 of 5)	6102	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
85358	chr16	50259551	50260500	+	0	NA	Intergenic	Intergenic	-6526	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
117382	chr19	19591101	19591880	+	0	NA	intron (NM_025245, intron 2 of 7)	intron (NM_025245, intron 2 of 7)	27197	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
224585	chr9	20243701	20243900	+	0	NA	Intergenic	Intergenic	167438	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
100362	chr17	60025551	60026400	+	0	NA	Intergenic	CpG	-6923	NR_002924	653645		NR_002924	ENSG00000267104	TBC1D3P1-DHX40P1	DHX40P|DHX40P1|TBC1D3P1	TBC1D3P1-DHX40P1 readthrough, transcribed pseudogene	pseudo
3704	chr1	16582471	16583000	+	0	NA	exon (NM_017940, exon 14 of 29)	exon (NM_017940, exon 14 of 29)	30829	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
31955	chr10	100690451	100690630	+	0	NA	Intergenic	AluYe5|SINE|Alu	-44856	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
204474	chr7	4730151	4730530	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	-45283	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
158258	chr22	50313401	50313780	+	0	NA	intron (NM_001001794, intron 15 of 19)	intron (NM_001001794, intron 15 of 19)	-5944	NM_001376869	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
161835	chr3	45685501	45685900	+	0	NA	3' UTR (NM_014240, exon 8 of 8)	3' UTR (NM_014240, exon 8 of 8)	3182	NR_033947	644714		NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
222306	chr8	133487421	133487950	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	84202	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
46232	chr11	124626651	124626750	+	0	NA	intron (NM_032811, intron 4 of 8)	intron (NM_032811, intron 4 of 8)	3836	NR_016021	84897		NM_032811	ENSG00000154144	TBRG1	NIAM|TB-5	transforming growth factor beta regulator 1	protein-coding
115692	chr19	16199171	16199330	+	0	NA	intron (NM_001130524, intron 1 of 12)	L2b|LINE|L2	1339	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
155612	chr22	38842871	38844680	+	0	NA	exon (NM_014293, exon 1 of 5)	exon (NM_014293, exon 1 of 5)	253	NM_014293	23467		NM_014293	ENSG00000221890	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
206776	chr7	36719601	36720730	+	0	NA	intron (NM_001177506, intron 1 of 21)	AluSx4|SINE|Alu	4329	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
47598	chr12	4909701	4910200	+	0	NA	promoter-TSS (NM_000217)	promoter-TSS (NM_000217)	45	NM_000217	3736		NM_000217	ENSG00000111262	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel subfamily A member 1	protein-coding
3536	chr1	16081301	16081500	+	0	NA	Intergenic	AluJo|SINE|Alu	-7749	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
234862	chrX	25013571	25013880	+	0	NA	exon (NM_139058, exon 2 of 5)	exon (NM_139058, exon 2 of 5)	2240	NM_139058	170302		NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
46454	chr11	128190071	128190830	+	0	NA	Intergenic	Intergenic	-18316	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
133716	chr2	127366851	127367350	+	0	NA	intron (NM_001371911, intron 1 of 16)	intron (NM_001371911, intron 1 of 16)	20875	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
172200	chr4	1267021	1268550	+	0	NA	Intergenic	LTR13|LTR|ERVK	-17430	NM_001377192	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
41140	chr11	65585551	65586580	+	0	NA	intron (NM_001099409, intron 12 of 18)	intron (NM_001099409, intron 12 of 18)	9735	NM_033347	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
7256	chr1	32356921	32357280	+	0	NA	Intergenic	Intergenic	5143	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
127115	chr2	37647301	37647750	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	24117	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
139026	chr2	218402551	218402850	+	0	NA	promoter-TSS (NR_029500)	promoter-TSS (NR_029500)	54	NR_029500	407017		NR_029500	ENSG00000199121	MIR26B	MIRN26B|hsa-mir-26b|miR-26b	microRNA 26b	ncRNA
178064	chr4	140053871	140054430	+	0	NA	intron (NM_018717, intron 1 of 4)	AluSx|SINE|Alu	-73865	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
21673	chr1	206702801	206703000	+	0	NA	intron (NM_032960, intron 1 of 9)	L2c|LINE|L2	17995	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
193969	chr6	31711001	31711600	+	0	NA	TTS (NM_001003693).3	TTS (NM_001003693).3	2765	NR_003673	79136		NM_024123		LY6G6E	C6orf22|G6e	lymphocyte antigen 6 family member G6E (pseudogene)	pseudo
121734	chr19	47725701	47726100	+	0	NA	exon (NM_014601, exon 4 of 6)	exon (NM_014601, exon 4 of 6)	12478	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
80467	chr16	2694521	2695200	+	0	NA	intron (NM_018992, intron 1 of 5)	intron (NM_018992, intron 1 of 5)	12337	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
141392	chr2	240830701	240831130	+	0	NA	Intergenic	AluSx|SINE|Alu	-9512	NM_001379653	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
18166	chr1	160795351	160796470	+	0	NA	promoter-TSS (NM_002348)	promoter-TSS (NM_002348)	-264	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
50027	chr12	43730221	43730500	+	0	NA	3' UTR (NM_001098614, exon 9 of 9)	3' UTR (NM_001098614, exon 9 of 9)	28430	NM_001098614	83448		NM_031292	ENSG00000129317	PUS7L	-	pseudouridine synthase 7 like	protein-coding
67320	chr14	69623171	69624450	+	0	NA	intron (NM_014734, intron 1 of 5)	Tigger3b|DNA|TcMar-Tigger	12214	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
170928	chr3	194300071	194300430	+	0	NA	TTS (NR_024480)	TTS (NR_024480)	12554	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
48031	chr12	6951801	6953200	+	0	NA	intron (NM_002831, intron 3 of 15)	L3|LINE|CR1	1144	NM_002831	5777		NM_002831	ENSG00000111679	PTPN6	HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1	protein tyrosine phosphatase non-receptor type 6	protein-coding
164615	chr3	66355451	66356050	+	0	NA	intron (NM_173471, intron 7 of 10)	intron (NM_173471, intron 7 of 10)	50017	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
17082	chr1	156128701	156129300	+	0	NA	intron (NM_001282624, intron 2 of 10)	intron (NM_001282624, intron 2 of 10)	2830	NM_001257374	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
72327	chr15	31265171	31265330	+	0	NA	Intergenic	Intergenic	-34388	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
64650	chr14	31418221	31418480	+	0	NA	intron (NM_015473, intron 1 of 35)	MER58A|DNA|hAT-Charlie	2200	NM_015473	25938		NM_015473	ENSG00000129493	HEATR5A	C14orf125|p200b	HEAT repeat containing 5A	protein-coding
133267	chr2	113459851	113459950	+	0	NA	intron (NM_001330340, intron 8 of 16)	intron (NM_001330340, intron 8 of 16)	22209	NR_138473	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
203269	chr6	169704221	169704580	+	0	NA	3' UTR (NM_001029863, exon 1 of 1)	3' UTR (NM_001029863, exon 1 of 1)	2274	NM_001317342	387263		NM_001029863	ENSG00000185127	C6orf120	-	chromosome 6 open reading frame 120	protein-coding
164488	chr3	60048051	60048920	+	0	NA	intron (NM_001320901, intron 2 of 6)	MLT1B|LTR|ERVL-MaLR	32424	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
147258	chr20	57430671	57430830	+	0	NA	Intergenic	AluJo|SINE|Alu	-37694	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
212748	chr7	129919201	129919400	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	33660	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
35527	chr11	1566001	1566580	+	0	NA	intron (NM_004420, intron 1 of 6)	intron (NM_004420, intron 1 of 6)	5981	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
168005	chr3	136818751	136819480	+	0	NA	promoter-TSS (NM_001097599)	promoter-TSS (NM_001097599)	-11	NM_025246	80723		NM_025246	ENSG00000168917	SLC35G2	TMEM22	solute carrier family 35 member G2	protein-coding
16472	chr1	154625351	154625850	+	0	NA	intron (NM_001365046, intron 1 of 15)	AluSz|SINE|Alu	2371	NM_001025107	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
202357	chr6	157748851	157749150	+	0	NA	Intergenic	MIRc|SINE|MIR	-74246	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
132359	chr2	105753901	105754730	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	9252	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
106629	chr18	22393001	22393480	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	24675	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
75844	chr15	69478221	69478780	+	0	NA	Intergenic	Intergenic	25682	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
236627	chrX	74569151	74569450	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	45324	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
188451	chr5	154477551	154478350	+	0	NA	exon (NM_004821, exon 1 of 2)	exon (NM_004821, exon 1 of 2)	277	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
215845	chr8	7067021	7067480	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-10511	NM_021010	1670		NM_021010	ENSG00000164816	DEFA5	DEF5|HD-5	defensin alpha 5	protein-coding
213106	chr7	131210501	131211000	+	0	NA	intron (NM_001145354, intron 2 of 18)	GA-rich|Low_complexity|Low_complexity	100656	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
120536	chr19	44905401	44905930	+	0	NA	promoter-TSS (NM_001302691)	promoter-TSS (NM_001302691)	-131	NM_001302688	348		NM_000041	ENSG00000130203	APOE	AD2|APO-E|ApoE4|LDLCQ5|LPG	apolipoprotein E	protein-coding
215370	chr7	157401721	157402480	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	-64131	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
113600	chr19	10288951	10290370	+	0	NA	promoter-TSS (NM_003259)	promoter-TSS (NM_003259)	-292	NM_003259	7087		NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	intercellular adhesion molecule 5	protein-coding
99711	chr17	50868951	50869400	+	0	NA	TTS (NR_038458)	TTS (NR_038458)	-1197	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
120811	chr19	45475501	45477900	+	0	NA	Intergenic	L2b|LINE|L2	8704	NM_006732	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
54927	chr12	96196971	96197480	+	0	NA	intron (NM_005230, intron 1 of 4)	MER20|DNA|hAT-Charlie	2850	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
233064	chr9	137079471	137080030	+	0	NA	intron (NM_207309, intron 5 of 8)	intron (NM_207309, intron 5 of 8)	2233	NM_207309	91373		NM_207309	ENSG00000197355	UAP1L1	-	UDP-N-acetylglucosamine pyrophosphorylase 1 like 1	protein-coding
223987	chr9	2055071	2055530	+	0	NA	intron (NM_003070, intron 6 of 33)	intron (NM_003070, intron 6 of 33)	33355	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
156878	chr22	42127521	42128180	+	0	NA	non-coding (NR_145674, exon 6 of 10).2	non-coding (NR_145674, exon 6 of 10).2	2958	NM_001348386	1564		NM_001002910		CYP2D7	CYP2D|CYP2D6|CYP2D7AP|CYP2D7P|CYP2D7P1|CYP2D@|P450C2D|P450DB1|RNA40057	cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)	protein-coding
8995	chr1	44670901	44671300	+	0	NA	promoter-TSS (NR_145816)	promoter-TSS (NR_145816)	-44	NR_145816	109623472		NR_145816		SNORD145	-	small nucleolar RNA, C/D box 145	snoRNA
15697	chr1	150994451	150995100	+	0	NA	intron (NM_003568, intron 13 of 13)	intron (NM_003568, intron 13 of 13)	12127	NM_001040217	55793		NM_018379	ENSG00000143409	MINDY1	FAM63A|MINDY-1	MINDY lysine 48 deubiquitinase 1	protein-coding
121633	chr19	47448621	47449200	+	0	NA	intron (NM_015063, intron 3 of 9)	L2b|LINE|L2	22983	NM_015063	6543		NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
209273	chr7	75917021	75918350	+	0	NA	intron (NM_001367562, intron 2 of 16)	AluSx1|SINE|Alu	2488	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
39968	chr11	62587551	62588050	+	0	NA	intron (NM_022830, intron 2 of 8)	intron (NM_022830, intron 2 of 8)	3723	NM_001367906	64852		NM_022830	ENSG00000149016	TUT1	PAPD2|RBM21|STARPAP|TENT1|TUTase|URLC6	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding
6383	chr1	27886151	27887630	+	0	NA	TTS (NM_004848)	TTS (NM_004848)	14346	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
6235	chr1	27527881	27528730	+	0	NA	Intergenic	CpG	-38138	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
129622	chr2	70122801	70123330	+	0	NA	TTS (NR_024444)	TTS (NR_024444)	2251	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
113950	chr19	10759471	10760950	+	0	NA	intron (NM_001005362, intron 2 of 19)	AluSz|SINE|Alu	-20044	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
9278	chr1	46346001	46347430	+	0	NA	intron (NR_045790, intron 2 of 4)	AluSq|SINE|Alu	5537	NM_001256127	387338		NM_199044	ENSG00000117481	NSUN4	SHTAP	NOP2/Sun RNA methyltransferase 4	protein-coding
172506	chr4	2258451	2258950	+	0	NA	intron (NM_006454, intron 2 of 5)	intron (NM_006454, intron 2 of 5)	3409	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
14403	chr1	144271171	144271530	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	5412	NR_111000	101060524		NR_111000		LOC101060524	-	D(1B) dopamine receptor-like	pseudo
201248	chr6	144062771	144065400	+	0	NA	intron (NM_001289040, intron 1 of 5)	CpG	514	NM_001080955	5325		NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
33032	chr10	110803771	110804600	+	0	NA	intron (NM_001134363, intron 7 of 13)	MLT1K|LTR|ERVL-MaLR	66719	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
88444	chr16	84844121	84844200	+	0	NA	intron (NM_031476, intron 2 of 14)	intron (NM_031476, intron 2 of 14)	24175	NM_031476	83716		NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2|LGL1	cysteine rich secretory protein LCCL domain containing 2	protein-coding
174385	chr4	39031771	39032780	+	0	NA	exon (NM_024943, exon 1 of 7)	exon (NM_024943, exon 1 of 7)	134	NM_024943	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
60218	chr13	40493351	40493650	+	0	NA	Intergenic	MIRc|SINE|MIR	-12494	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
85999	chr16	57465001	57465600	+	0	NA	intron (NM_032940, intron 2 of 8)	intron (NM_032940, intron 2 of 8)	2621	NM_032940	5432		NM_002694	ENSG00000102978	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	RNA polymerase II subunit C	protein-coding
81991	chr16	11900401	11900680	+	0	NA	intron (NM_001130007, intron 1 of 14)	intron (NM_001130007, intron 1 of 14)	15416	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
221567	chr8	125120651	125120750	+	0	NA	intron (NR_146191, intron 3 of 8)	intron (NR_146191, intron 3 of 8)	28840	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
172887	chr4	3443251	3444150	+	0	NA	intron (NM_001528, intron 4 of 13)	intron (NM_001528, intron 4 of 13)	1732	NM_001297439	3083		NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
2393	chr1	9531751	9531850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7665	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
54674	chr12	93392321	93392580	+	0	NA	intron (NM_001301023, intron 1 of 4)	AluSx1|SINE|Alu	13872	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
215527	chr7	158766021	158766280	+	0	NA	intron (NM_020728, intron 8 of 21)	AluY|SINE|Alu	-61346	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
187344	chr5	141678771	141679130	+	0	NA	intron (NM_022481, intron 4 of 32)	L2a|LINE|L2	3280	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
19745	chr1	181189871	181190630	+	0	NA	Intergenic	Intergenic	15766	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
199690	chr6	122848621	122849230	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	59667	NM_006714	10924		NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	sphingomyelin phosphodiesterase acid like 3A	protein-coding
204961	chr7	6372071	6372230	+	0	NA	Intergenic	AluJr|SINE|Alu	-2377	NM_006908	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
4184	chr1	19430501	19430930	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	53580	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
190263	chr5	179146271	179146580	+	0	NA	intron (NM_014244, intron 10 of 21)	Arthur1|DNA|hAT-Tip100	86052	NM_014594	30832		NM_014594	ENSG00000177932	ZNF354C	KID3	zinc finger protein 354C	protein-coding
222494	chr8	140459221	140459800	+	0	NA	promoter-TSS (NM_031466)	promoter-TSS (NM_031466)	-931	NM_031466	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
54715	chr12	93466221	93466480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1164	NR_038161	28977		NM_014050	ENSG00000198015	MRPL42	HSPC204|L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT|mL42	mitochondrial ribosomal protein L42	protein-coding
111659	chr19	4229251	4229850	+	0	NA	promoter-TSS (NM_005755)	promoter-TSS (NM_005755)	27	NM_005755	10148		NM_005755	ENSG00000105246	EBI3	IL-27B|IL27B|IL35B	Epstein-Barr virus induced 3	protein-coding
47414	chr12	2892821	2893280	+	0	NA	intron (NM_001160408, intron 1 of 11)	AluJb|SINE|Alu	2159	NM_003324	7289		NM_003324	ENSG00000078246	TULP3	HRCDF|TUBL3	TUB like protein 3	protein-coding
74185	chr15	55535151	55535730	+	0	NA	Intergenic	L1PA13|LINE|L1	-27206	NM_130810	161582		NM_130810	ENSG00000256061	DNAAF4	CILD25|DYX1|DYX1C1|DYXC1|EKN1|RD|pf23	dynein axonemal assembly factor 4	protein-coding
210447	chr7	100105451	100106050	+	0	NA	intron (NM_004722, intron 11 of 14)	FLAM_C|SINE|Alu	4102	NM_001363671	9179		NM_004722	ENSG00000221838	AP4M1	CPSQ3|MU-4|MU-ARP2|SPG50	adaptor related protein complex 4 subunit mu 1	protein-coding
181840	chr5	52987701	52988100	+	0	NA	Intergenic	Intergenic	-1452	NR_073107	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
144874	chr20	36913951	36914050	+	0	NA	intron (NM_001363733, intron 9 of 15)	AluSz|SINE|Alu	37708	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
175489	chr4	73225801	73226430	+	0	NA	intron (NM_032217, intron 1 of 33)	AluSc8|SINE|Alu	-3058	NM_001286771	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
207153	chr7	43585271	43586600	+	0	NA	intron (NM_004760, intron 1 of 6)	intron (NM_004760, intron 1 of 6)	2827	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
181375	chr5	40634421	40634880	+	0	NA	Intergenic	L1PA7|LINE|L1	-45265	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
179397	chr4	183722521	183723370	+	0	NA	Intergenic	CpG	63652	NM_021942	60684		NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S|LGMDR18	trafficking protein particle complex subunit 11	protein-coding
50199	chr12	46186971	46187680	+	0	NA	3' UTR (NM_001077484, exon 17 of 17)	3' UTR (NM_001077484, exon 17 of 17)	79191	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
234554	chrX	19728171	19728580	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	-57376	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
131028	chr2	88060151	88061150	+	0	NA	Intergenic	Intergenic	-4867	NM_001304526	51315		NM_016618	ENSG00000172086	KRCC1	CHBP2	lysine rich coiled-coil 1	protein-coding
169799	chr3	176373451	176373550	+	0	NA	Intergenic	L1MA5A|LINE|L1	128949	NR_031687	100302204		NR_031687	ENSG00000221737	MIR548I1	MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1	microRNA 548i-1	ncRNA
49346	chr12	22146671	22147030	+	0	NA	Intergenic	L1PA7|LINE|L1	100632	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
44753	chr11	112048721	112049050	+	0	NA	intron (NR_164072, intron 9 of 12)	L1M4|LINE|L1	23477	NM_001372035	1737		NM_001931	ENSG00000150768	DLAT	DLTA|E2|PBC|PDC-E2|PDCE2	dihydrolipoamide S-acetyltransferase	protein-coding
100178	chr17	58653471	58653830	+	0	NA	intron (NM_198393, intron 1 of 32)	LTR26C|LTR|ERV1	38395	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
206743	chr7	36661421	36661680	+	0	NA	intron (NM_001177506, intron 3 of 21)	intron (NM_001177506, intron 3 of 21)	-61430	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
119041	chr19	38976601	38976830	+	0	NA	promoter-TSS (NM_024907)	promoter-TSS (NM_024907)	-973	NR_104026	115290		NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
209540	chr7	77197201	77197600	+	0	NA	intron (NM_006682, intron 1 of 1)	MIRb|SINE|MIR	2419	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
111909	chr19	4689451	4689780	+	0	NA	exon (NM_001384623, exon 17 of 24)	exon (NM_001384623, exon 17 of 24)	10333	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
108348	chr18	67300551	67300950	+	0	NA	Intergenic	LTR18B|LTR|ERVL	-215796	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
204855	chr7	5822201	5823800	+	0	NA	promoter-TSS (NR_023382)	promoter-TSS (NR_023382)	-160	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
39324	chr11	59135801	59136630	+	0	NA	non-coding (NR_110184, exon 3 of 4)	non-coding (NR_110184, exon 3 of 4)	6593	NR_110184	101927204		NR_110184	ENSG00000245571	FAM111A-DT	-	FAM111A divergent transcript	ncRNA
81782	chr16	11526801	11527350	+	0	NA	intron (NM_001370704, intron 1 of 66)	intron (NM_001370704, intron 1 of 66)	172	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
118757	chr19	38372071	38372430	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2321	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
125595	chr2	17646021	17646300	+	0	NA	intron (NM_001366805, intron 2 of 2)	intron (NM_001366805, intron 2 of 2)	105464	NM_001366806	7447		NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin like 1	protein-coding
308	chr1	971351	972180	+	0	NA	intron (NM_001160184, intron 8 of 14)	intron (NM_001160184, intron 8 of 14)	5283	NM_001160184	84069		NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
196594	chr6	44222441	44222550	+	0	NA	intron (NM_001304462, intron 2 of 13)	intron (NM_001304462, intron 2 of 13)	-1100	NM_001078177	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
52441	chr12	55922851	55923350	+	0	NA	intron (NM_032345, intron 1 of 2)	AluSp|SINE|Alu	4025	NM_001143853	84305		NM_032345	ENSG00000170473	PYM1	PYM|WIBG	PYM homolog 1, exon junction complex associated factor	protein-coding
2864	chr1	11334321	11334580	+	0	NA	Intergenic	Intergenic	61252	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
239374	chrY	20925221	20925730	+	0	NA	Intergenic	L1PA4|LINE|L1	169367	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
221710	chr8	127195651	127196050	+	0	NA	intron (NR_120364, intron 1 of 2)	L2|LINE|L2	1777	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
97149	chr17	42565621	42565880	+	0	NA	exon (NM_001042529, exon 9 of 10)	exon (NM_001042529, exon 9 of 10)	-1310	NM_198205	6945		NM_013383	ENSG00000108788	MLX	MAD7|MXD7|TCFL4|TF4|bHLHd13	MAX dimerization protein MLX	protein-coding
214682	chr7	150969601	150969800	+	0	NA	intron (NM_172056, intron 2 of 8)	L2b|LINE|L2	8614	NM_172056	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
132053	chr2	101150601	101151680	+	0	NA	promoter-TSS (NR_135594)	promoter-TSS (NR_135594)	242	NM_001330348	11138		NM_007063	ENSG00000204634	TBC1D8	AD3|GRAMD8|HBLP1|TBC1D8A|VRP	TBC1 domain family member 8	protein-coding
206644	chr7	36152501	36154350	+	0	NA	5' UTR (NM_030636, exon 1 of 8)	5' UTR (NM_030636, exon 1 of 8)	171	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
91735	chr17	6665851	6666300	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	8356	NR_045985	100652883		NR_045985		ALOX15P1	ALOX15P	arachidonate 15-lipoxygenase pseudogene 1	pseudo
66537	chr14	61773571	61773730	+	0	NA	intron (NM_003082, intron 4 of 9)	AluY|SINE|Alu	11230	NM_003082	6617		NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
141143	chr2	239225471	239226030	+	0	NA	intron (NM_006037, intron 3 of 26)	intron (NM_006037, intron 3 of 26)	-30293	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
211002	chr7	102289721	102290080	+	0	NA	intron (NM_001359229, intron 1 of 8)	intron (NM_001359229, intron 1 of 8)	434	NM_001359231	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
76443	chr15	74805551	74806180	+	0	NA	Intergenic	L2c|LINE|L2	-6970	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
199946	chr6	127913371	127913850	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	5021	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
228780	chr9	111524721	111526380	+	0	NA	intron (NM_133464, intron 1 of 5)	MER20|DNA|hAT-Charlie	371	NM_133464	158399		NM_133464	ENSG00000173258	ZNF483	ZKSCAN16|ZSCAN48	zinc finger protein 483	protein-coding
1448	chr1	2652221	2653300	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-19744	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
92703	chr17	14151971	14152330	+	0	NA	intron (NM_001303, intron 4 of 6)	MLT2F|LTR|ERVL	82646	NM_001303	1352		NM_001303	ENSG00000006695	COX10	MC4DN3	cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10	protein-coding
130355	chr2	85014621	85015230	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	43764	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
149178	chr21	18249701	18249900	+	0	NA	intron (NM_001204174, intron 1 of 5)	MIR|SINE|MIR	3925	NM_001204174	140578		NM_024944	ENSG00000154645	CHODL	C21orf68|MT75|PRED12	chondrolectin	protein-coding
77246	chr15	81302871	81303330	+	0	NA	intron (NM_172217, intron 15 of 18)	intron (NM_172217, intron 15 of 18)	6130	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
139326	chr2	219551951	219553330	+	0	NA	exon (NM_015311, exon 18 of 21)	exon (NM_015311, exon 18 of 21)	-3493	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
178364	chr4	146243151	146244030	+	0	NA	Intergenic	Intergenic	29052	NM_001354631	345051		NM_001354631	ENSG00000250673	REELD1	-	reeler domain containing 1	protein-coding
40986	chr11	65388701	65388900	+	0	NA	intron (NM_001300832, intron 2 of 9)	intron (NM_001300832, intron 2 of 9)	2163	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
22714	chr1	224168771	224169530	+	0	NA	Intergenic	MIRb|SINE|MIR	-14090	NM_001321541	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
191583	chr6	12019071	12019500	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	6973	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
37618	chr11	20337751	20337850	+	0	NA	Intergenic	Intergenic	-25885	NM_006410	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
73072	chr15	40920371	40920530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8890	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
166296	chr3	112557521	112557780	+	0	NA	intron (NM_022488, intron 2 of 11)	intron (NM_022488, intron 2 of 11)	-3670	NM_001348906	55032		NM_017945	ENSG00000138459	SLC35A5	-	solute carrier family 35 member A5	protein-coding
190686	chr6	104721	104980	+	0	NA	Intergenic	Intergenic	43309	NR_109817	107105278		NR_109817		SEPTIN14P6	C6orf88|LINC00266-3|NCRNA00266-3|NCRNA00266C|SEPT14P6|dJ24O22.2	septin 14 pseudogene 6	pseudo
97347	chr17	43287421	43287680	+	0	NA	Intergenic	AluSx|SINE|Alu	-3221	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
161763	chr3	44861371	44862900	+	0	NA	TTS (NR_030290)	TTS (NR_030290)	223	NM_144638	131616		NM_144638	ENSG00000169964	TMEM42	-	transmembrane protein 42	protein-coding
22675	chr1	223825571	223826500	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	19912	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
220287	chr8	98036921	98037500	+	0	NA	TTS (NM_002380)	TTS (NM_002380)	5007	NR_002581	26775		NR_002581	ENSG00000207067	SNORA72	RNU72|U72	small nucleolar RNA, H/ACA box 72	snoRNA
110250	chr19	1786921	1787400	+	0	NA	exon (NM_138813, exon 25 of 29)	exon (NM_138813, exon 25 of 29)	25116	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
46202	chr11	123481301	123481830	+	0	NA	intron (NM_001367421, intron 3 of 20)	intron (NM_001367421, intron 3 of 20)	-28351	NM_001330396	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
198513	chr6	106517821	106518080	+	0	NA	intron (NM_001371242, intron 3 of 21)	intron (NM_001371242, intron 3 of 21)	6095	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
233408	chr9	137575271	137575730	+	0	NA	5' UTR (NM_001346392, exon 3 of 8)	5' UTR (NM_001346392, exon 3 of 8)	3092	NM_001346373	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
222006	chr8	130019171	130019330	+	0	NA	Intergenic	Intergenic	-2121	NM_001353269	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
95067	chr17	32822521	32823000	+	0	NA	intron (NM_015194, intron 1 of 21)	CpG	54364	NM_015194	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
117082	chr19	19115201	19115400	+	0	NA	Intergenic	Intergenic	23178	NM_017814	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
59809	chr13	30393571	30393730	+	0	NA	Intergenic	AluJb|SINE|Alu	-19736	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
100062	chr17	58155701	58156130	+	0	NA	exon (NM_012374, exon 1 of 1)	exon (NM_012374, exon 1 of 1)	761	NM_012374	26689		NM_012374	ENSG00000141194	OR4D1	OR17-23|OR4D3|OR4D4P|TPCR16	olfactory receptor family 4 subfamily D member 1	protein-coding
32953	chr10	110417201	110417780	+	0	NA	Intergenic	Intergenic	-80417	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
162611	chr3	48704071	48704230	+	0	NA	intron (NM_016291, intron 1 of 5)	intron (NM_016291, intron 1 of 5)	13071	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
184623	chr5	107263321	107264030	+	0	NA	Intergenic	Intergenic	-252661	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
203137	chr6	166949101	166949990	+	0	NA	intron (NM_003730, intron 2 of 8)	intron (NM_003730, intron 2 of 8)	7005	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
133139	chr2	112670551	112670650	+	0	NA	Intergenic	Intergenic	24661	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
156907	chr22	42255651	42256150	+	0	NA	intron (NM_005650, intron 1 of 5)	intron (NM_005650, intron 1 of 5)	-13853	NR_036498	388906		NR_036498		OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
44086	chr11	95699271	95701130	+	0	NA	Intergenic	Intergenic	89582	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
65345	chr14	50320421	50321550	+	0	NA	intron (NM_001382507, intron 2 of 5)	intron (NM_001382507, intron 2 of 5)	8661	NM_015684	27109		NM_015684	ENSG00000125375	DMAC2L	ATP5S|ATPW|FB|HSU79253	distal membrane arm assembly component 2 like	protein-coding
161664	chr3	43336501	43336700	+	0	NA	intron (NM_017719, intron 4 of 6)	AluJr4|SINE|Alu	15362	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
145353	chr20	41145921	41146500	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-8210	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
186426	chr5	135890951	135891050	+	0	NA	Intergenic	Intergenic	4841	NM_000590	3578		NM_000590	ENSG00000145839	IL9	HP40|IL-9|P40	interleukin 9	protein-coding
173228	chr4	6915151	6915450	+	0	NA	intron (NM_020773, intron 1 of 13)	intron (NM_020773, intron 1 of 13)	5474	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
172381	chr4	1761271	1761700	+	0	NA	Intergenic	Intergenic	-31808	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
50397	chr12	47306601	47307100	+	0	NA	intron (NR_135024, intron 1 of 1)	LTR12D|LTR|ERV1	549	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
183395	chr5	77774251	77774350	+	0	NA	intron (NM_001297738, intron 1 of 2)	MER4D1|LTR|ERV1	2039	NM_004607	6902		NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
67090	chr14	68268101	68268830	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	360322	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
31407	chr10	95557671	95557830	+	0	NA	intron (NM_001384456, intron 1 of 27)	intron (NM_001384456, intron 1 of 27)	3621	NM_001384465	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
129400	chr2	68838051	68838150	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	33297	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
165921	chr3	107271751	107272080	+	0	NA	intron (NR_028302, intron 1 of 3)	intron (NR_028302, intron 1 of 3)	31223	NR_028302	344595		NR_028301	ENSG00000243701	DUBR	DUM|LINC00883|LINC0883	DPPA2 upstream binding RNA	ncRNA
156657	chr22	41639371	41639780	+	0	NA	intron (NM_001288976, intron 6 of 12)	AluJo|SINE|Alu	18280	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
184724	chr5	109413821	109414200	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-4036	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
72097	chr15	28922871	28923380	+	0	NA	intron (NM_001353790, intron 2 of 14)	intron (NM_001353790, intron 2 of 14)	1488	NM_001130414	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
149062	chr21	15520951	15521430	+	0	NA	Intergenic	HAL1b|LINE|L1	-208744	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
44273	chr11	102287171	102287430	+	0	NA	Intergenic	LTR52|LTR|ERVL	-30184	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
62293	chr13	98987101	98987500	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-9236	NM_001130050	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
87630	chr16	74438221	74438880	+	0	NA	Intergenic	Intergenic	-16409	NM_001385192	497190		NM_001011880	ENSG00000140839	CLEC18B	MRCL2	C-type lectin domain family 18 member B	protein-coding
146528	chr20	49939701	49940230	+	0	NA	intron (NM_018683, intron 1 of 5)	AluSx|SINE|Alu	3568	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
56616	chr12	118147851	118148150	+	0	NA	Intergenic	AluSx1|SINE|Alu	11876	NM_002567	5037		NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
103705	chr17	78822871	78823230	+	0	NA	intron (NR_169585, intron 6 of 19)	intron (NR_169585, intron 6 of 19)	17764	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
67065	chr14	67863901	67864100	+	0	NA	intron (NM_133509, intron 4 of 10)	MSTA|LTR|ERVL-MaLR	40408	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
217989	chr8	38379971	38380980	+	0	NA	intron (NM_017778, intron 1 of 9)	intron (NM_017778, intron 1 of 9)	1796	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
113422	chr19	9767871	9769250	+	0	NA	non-coding (NR_148544, exon 1 of 8)	non-coding (NR_148544, exon 1 of 8)	178	NR_148544	162993		NM_001077624	ENSG00000196605	ZNF846	-	zinc finger protein 846	protein-coding
127898	chr2	46239371	46240200	+	0	NA	Intergenic	Intergenic	-57622	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
179891	chr5	668951	669880	+	0	NA	TTS (NR_164122)	TTS (NR_164122)	23937	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
200969	chr6	139290321	139291300	+	0	NA	intron (NM_153235, intron 1 of 9)	intron (NM_153235, intron 1 of 9)	1188	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
12799	chr1	109796551	109797250	+	0	NA	Intergenic	Intergenic	-32977	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
120084	chr19	42116371	42116730	+	0	NA	intron (NM_001247994, intron 5 of 13)	MIRc|SINE|MIR	15896	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
130967	chr2	87539851	87540150	+	0	NA	Intergenic	Intergenic	70050	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
120317	chr19	43505971	43506530	+	0	NA	TTS (NM_014297)	TTS (NM_014297)	-1417	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
39094	chr11	48015851	48016430	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	35581	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
22222	chr1	212560021	212560830	+	0	NA	Intergenic	Intergenic	-4909	NM_001030287	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
90572	chr17	1522201	1522600	+	0	NA	intron (NM_006224, intron 10 of 11)	AluSx|SINE|Alu	5481	NR_028514	100306951		NR_028514	ENSG00000236618	PITPNA-AS1	-	PITPNA antisense RNA 1	ncRNA
199979	chr6	127983121	127984400	+	0	NA	intron (NM_001291981, intron 25 of 32).2	intron (NM_001291981, intron 25 of 32).2	-44105	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
154524	chr22	36125151	36125480	+	0	NA	Intergenic	Intergenic	35440	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
83217	chr16	23734901	23735430	+	0	NA	Intergenic	Intergenic	-19861	NM_022097	63928		NM_022097	ENSG00000166869	CHP2	-	calcineurin like EF-hand protein 2	protein-coding
235275	chrX	41864051	41864150	+	0	NA	intron (NM_001126055, intron 1 of 24)	intron (NM_001126055, intron 1 of 24)	58934	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
145059	chr20	38446321	38447380	+	0	NA	non-coding (NR_003239, exon 1 of 5)	non-coding (NR_003239, exon 1 of 5)	196	NR_003239	128439		NM_139016	ENSG00000174365	SNHG11	C20orf198|LINC00101|NCRNA00101	small nucleolar RNA host gene 11	ncRNA
177706	chr4	122003321	122003650	+	0	NA	Intergenic	Intergenic	-51425	NM_001130698	7222		NM_003305	ENSG00000138741	TRPC3	SCA41|TRP3	transient receptor potential cation channel subfamily C member 3	protein-coding
127866	chr2	45729771	45730080	+	0	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	78250	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
197335	chr6	73412551	73412650	+	0	NA	intron (NM_018665, intron 11 of 16)	AluSz6|SINE|Alu	17772	NM_018665	55510		NM_018665	ENSG00000080007	DDX43	CT13|HAGE	DEAD-box helicase 43	protein-coding
25488	chr10	7003951	7004250	+	0	NA	Intergenic	Intergenic	182684	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
231936	chr9	133122751	133122850	+	0	NA	intron (NM_001042368, intron 1 of 17)	AluSx1|SINE|Alu	-1560	NM_006266	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
36586	chr11	6695271	6695830	+	0	NA	Intergenic	Intergenic	-12210	NM_022061	63875		NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26|bL17m	mitochondrial ribosomal protein L17	protein-coding
152344	chr22	20432501	20432700	+	0	NA	intron (NM_182895, intron 1 of 10)	intron (NM_182895, intron 1 of 10)	5225	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
76819	chr15	77107701	77107900	+	0	NA	TTS (NM_001385026)	TTS (NM_001385026)	-36691	NM_198902	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
202965	chr6	161258751	161258850	+	0	NA	intron (NM_020133, intron 1 of 8)	AluSx1|SINE|Alu	15261	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
124819	chr2	7670871	7671030	+	0	NA	Intergenic	Intergenic	228705	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
24763	chr1	248841071	248841230	+	0	NA	intron (NM_024836, intron 1 of 3)	intron (NM_024836, intron 1 of 3)	2926	NM_024836	79894		NM_024836	ENSG00000171161	ZNF672	-	zinc finger protein 672	protein-coding
57588	chr12	122400451	122400550	+	0	NA	TTS (NR_045382)	TTS (NR_045382)	4958	NR_045382	100507066		NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
13043	chr1	111251571	111251930	+	0	NA	Intergenic	Intergenic	22014	NM_001025199	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
20576	chr1	198737271	198737430	+	0	NA	intron (NM_002838, intron 23 of 32)	L1MA3|LINE|L1	98310	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
135451	chr2	161238501	161240150	+	0	NA	intron (NR_110593, intron 3 of 3)	CpG	-5414	NR_110164	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
92226	chr17	7886001	7886900	+	0	NA	intron (NM_001005271, intron 1 of 39)	intron (NM_001005271, intron 1 of 39)	-1030	NM_001330111	84316		NM_032356	ENSG00000183011	NAA38	LSMD1|MAK31|PFAAP2	N-alpha-acetyltransferase 38, NatC auxiliary subunit	protein-coding
26647	chr10	22570351	22571250	+	0	NA	intron (NM_001330062, intron 5 of 9)	Charlie1a|DNA|hAT-Charlie	-132871	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
16734	chr1	155258501	155258700	+	0	NA	intron (NM_052837, intron 4 of 7).2	AluSp|SINE|Alu	-3117	NM_006589	10712		NM_006589	ENSG00000160767	ENTREP3	C1orf2|COTE1|FAM189B	endosomal transmembrane epsin interactor 3	protein-coding
72129	chr15	28984401	28985400	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	-10627	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
171067	chr3	195438451	195438750	+	0	NA	intron (NM_012287, intron 1 of 22)	FLAM_A|SINE|Alu	4420	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
43910	chr11	89097951	89098130	+	0	NA	Intergenic	Intergenic	-32058	NM_001384268	2915		NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
193963	chr6	31697601	31697800	+	0	NA	intron (NR_033488, intron 4 of 19).5	intron (NR_033488, intron 4 of 19).5	3391	NR_039789	100616230		NR_039789	ENSG00000266776	MIR4646	mir-4646	microRNA 4646	ncRNA
166268	chr3	112470801	112471200	+	0	NA	intron (NM_001085357, intron 2 of 3)	intron (NM_001085357, intron 2 of 3)	28472	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
6853	chr1	31059201	31060330	+	0	NA	intron (NM_014676, intron 1 of 21)	intron (NM_014676, intron 1 of 21)	5952	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
176190	chr4	83473821	83474080	+	0	NA	intron (NM_139076, intron 3 of 8)	AluSz6|SINE|Alu	11150	NM_139076	84142		NM_139076	ENSG00000163322	ABRAXAS1	ABRA1|CCDC98|FAM175A	abraxas 1, BRCA1 A complex subunit	protein-coding
79606	chr16	1070471	1070830	+	0	NA	intron (NR_027242, intron 2 of 3)	intron (NR_027242, intron 2 of 3)	-2106	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
143372	chr20	26308601	26309200	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-99667	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
228852	chr9	112317121	112317830	+	0	NA	intron (NM_001375918, intron 1 of 13)	L1M5|LINE|L1	15551	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
202851	chr6	159777721	159777980	+	0	NA	TTS (NM_001008897)	TTS (NM_001008897)	2531	NR_002960	677806		NR_002960	ENSG00000207392	SNORA20	ACA20	small nucleolar RNA, H/ACA box 20	snoRNA
217548	chr8	29338451	29338950	+	0	NA	intron (NM_057158, intron 3 of 4)	intron (NM_057158, intron 3 of 4)	10105	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
63100	chr13	113295201	113295400	+	0	NA	Intergenic	MER34C_|LTR|ERV1	-1939	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
57312	chr12	121672401	121673780	+	0	NA	promoter-TSS (NM_001363685).2	promoter-TSS (NM_001363685).2	-446	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
94499	chr17	29293401	29295780	+	0	NA	promoter-TSS (NM_020772)	promoter-TSS (NM_020772)	-442	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
63468	chr13	114142241	114144650	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	-10822	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
148926	chr21	9247571	9247730	+	0	NA	Intergenic	Intergenic	-117889	NR_038329	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
61645	chr13	73879251	73879750	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	254429	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
215435	chr7	157686621	157686880	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	-112328	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
75883	chr15	69744421	69744950	+	0	NA	Intergenic	Intergenic	-90549	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
214033	chr7	143299751	143300250	+	0	NA	exon (NM_032982, exon 7 of 11)	exon (NM_032982, exon 7 of 11)	10412	NM_001224	835		NM_001224	ENSG00000106144	CASP2	CASP-2|ICH1|MRT80|NEDD-2|NEDD2|PPP1R57	caspase 2	protein-coding
113907	chr19	10692821	10693150	+	0	NA	TTS (NM_017620)	TTS (NM_017620)	-8454	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
149236	chr21	25572571	25573350	+	0	NA	intron (NR_001458, intron 2 of 2)	intron (NR_001458, intron 2 of 2)	-1020	NR_030784	406947		NR_030784	ENSG00000283904	MIR155	MIRN155|miRNA155|mir-155	microRNA 155	ncRNA
236920	chrX	91770771	91771180	+	0	NA	Intergenic	Intergenic	-64486	NM_001168362	27328		NM_014522	ENSG00000102290	PCDH11X	PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119	protocadherin 11 X-linked	protein-coding
203028	chr6	163707751	163708050	+	0	NA	Intergenic	Intergenic	-36416	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
137785	chr2	199471401	199471850	+	0	NA	promoter-TSS (NM_015265)	promoter-TSS (NM_015265)	-359	NM_015265	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
123186	chr19	52492521	52492830	+	0	NA	intron (NM_001099694, intron 3 of 5)	intron (NM_001099694, intron 3 of 5)	-34981	NM_001321425	388558		NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
194985	chr6	35366421	35366880	+	0	NA	intron (NM_001171819, intron 2 of 6)	AluSz6|SINE|Alu	24092	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
223680	chr8	144407971	144408130	+	0	NA	intron (NM_013291, intron 2 of 37)	intron (NM_013291, intron 2 of 37)	1285	NM_013291	29894		NM_013291	ENSG00000071894	CPSF1	CPSF160|HSU37012|MYP27|P/cl.18	cleavage and polyadenylation specific factor 1	protein-coding
28604	chr10	56360801	56361930	+	0	NA	promoter-TSS (NM_007057)	promoter-TSS (NM_007057)	-92	NM_001005413	11130		NM_007057	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|SIP30|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
224353	chr9	7011721	7012080	+	0	NA	intron (NR_148679, intron 14 of 22)	intron (NR_148679, intron 14 of 22)	253927	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
91078	chr17	3050121	3050380	+	0	NA	Intergenic	Intergenic	13357	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
186315	chr5	134584801	134585030	+	0	NA	Intergenic	Intergenic	47913	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
90776	chr17	2066971	2067130	+	0	NA	intron (NM_001282326, intron 4 of 6)	intron (NM_001282326, intron 4 of 6)	10740	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
52057	chr12	54024251	54025150	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	-3740	NM_004503	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
209718	chr7	86976901	86977100	+	0	NA	intron (NM_001142749, intron 1 of 21)	intron (NM_001142749, intron 1 of 21)	-11101	NM_152748	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
111866	chr19	4642321	4642780	+	0	NA	intron (NM_001167942, intron 1 of 1)	L2a|LINE|L2	2533	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
36782	chr11	9456401	9456600	+	0	NA	Intergenic	AluY|SINE|Alu	4198	NR_036539	644656		NR_036539	ENSG00000268403	LOC644656	-	uncharacterized LOC644656	ncRNA
113657	chr19	10378101	10378980	+	0	NA	intron (NM_001385207, intron 2 of 24)	intron (NM_001385207, intron 2 of 24)	2032	NM_001385207	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
177502	chr4	114807721	114808080	+	0	NA	Intergenic	L1PA17|LINE|L1	151141	NR_030303	693162		NR_030303	ENSG00000207931	MIR577	MIRN577|hsa-mir-577|mir-577	microRNA 577	ncRNA
125826	chr2	24353501	24353700	+	0	NA	intron (NM_147152, intron 1 of 29)	AluJb|SINE|Alu	6936	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
70357	chr14	101875271	101875750	+	0	NA	intron (NM_178587, intron 2 of 11)	intron (NM_178587, intron 2 of 11)	65647	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
198132	chr6	90456651	90457350	+	0	NA	Intergenic	Intergenic	130072	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
66251	chr14	61354371	61354750	+	0	NA	intron (NM_006255, intron 1 of 13)	L2c|LINE|L2	33117	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
34393	chr10	132360801	132361080	+	0	NA	intron (NM_030626, intron 8 of 10)	intron (NM_030626, intron 8 of 10)	23600	NM_001309474	80313		NM_030626	ENSG00000148814	LRRC27	-	leucine rich repeat containing 27	protein-coding
238369	chrX	149928451	149930030	+	0	NA	promoter-TSS (NM_001351114)	promoter-TSS (NM_001351114)	-333	NM_001351114	101927685		NM_001351114	ENSG00000283463	HSFX4	-	heat shock transcription factor family, X-linked member 4	protein-coding
223569	chr8	144264851	144265580	+	0	NA	intron (NM_015201, intron 3 of 15)	intron (NM_015201, intron 3 of 15)	-1238	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
108367	chr18	68662951	68663050	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	52108	NM_001350517	54495		NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
191055	chr6	3258521	3259980	+	0	NA	intron (NM_001128592, intron 1 of 3)	CpG	303	NM_001128591	389362		NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
88483	chr16	85103501	85103950	+	0	NA	intron (NM_001366920, intron 5 of 7)	intron (NM_001366920, intron 5 of 7)	8747	NM_198491	339145		NM_198491	ENSG00000153789	CIBAR2	FAM92B	CBY1 interacting BAR domain containing 2	protein-coding
156422	chr22	41204721	41206200	+	0	NA	intron (NM_031488, intron 1 of 16)	CpG	148	NM_031488	83746		NM_031488	ENSG00000100395	L3MBTL2	H-l(3)mbt-l|L3MBT	L3MBTL histone methyl-lysine binding protein 2	protein-coding
75721	chr15	68192701	68192900	+	0	NA	non-coding (NR_104583, exon 2 of 2)	non-coding (NR_104583, exon 2 of 2)	12532	NM_033429	91860		NM_033429	ENSG00000129007	CALML4	NY-BR-20	calmodulin like 4	protein-coding
71729	chr15	20358721	20358980	+	0	NA	Intergenic	CpG	76106	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
112534	chr19	6521901	6523300	+	0	NA	Intergenic	Intergenic	-8426	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
139415	chr2	222653321	222653980	+	0	NA	intron (NM_005687, intron 1 of 16)	AluJo|SINE|Alu	2442	NM_005687	10056		NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC|RILDBC1|RJBS	phenylalanyl-tRNA synthetase subunit beta	protein-coding
100236	chr17	59342601	59343080	+	0	NA	intron (NM_001005404, intron 1 of 4)	intron (NM_001005404, intron 1 of 4)	11185	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
87915	chr16	79177151	79177250	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	423537	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
41804	chr11	66877751	66877850	+	0	NA	intron (NM_001040716, intron 3 of 22)	L1ME4a|LINE|L1	20736	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
202300	chr6	157222451	157222550	+	0	NA	Intergenic	Intergenic	101019	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
11027	chr1	84902871	84903030	+	0	NA	Intergenic	LTR12|LTR|ERV1	-9744	NM_012152	23566		NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
163216	chr3	50248371	50248730	+	0	NA	intron (NM_001166425, intron 1 of 8)	(CTGCTC)n|Simple_repeat|Simple_repeat	1640	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
20772	chr1	201012871	201013500	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	10529	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
207488	chr7	44642471	44642830	+	0	NA	intron (NM_001363523, intron 2 of 23)	AluSg|SINE|Alu	36023	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
210468	chr7	100145671	100145830	+	0	NA	Intergenic	AluSz|SINE|Alu	-3168	NM_001008395	389541		NM_001008395	ENSG00000188186	LAMTOR4	C7orf59	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding
53314	chr12	64599171	64600080	+	0	NA	Intergenic	Intergenic	-10870	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
6032	chr1	27111171	27111330	+	0	NA	intron (NR_046474, intron 1 of 10)	intron (NR_046474, intron 1 of 10)	43875	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
139688	chr2	227374121	227374580	+	0	NA	intron (NM_024795, intron 1 of 3)	intron (NM_024795, intron 1 of 3)	4956	NM_024795	79853		NM_024795	ENSG00000168955	TM4SF20	PRO994|SLI5|TCCE518	transmembrane 4 L six family member 20	protein-coding
35170	chr11	773121	773400	+	0	NA	intron (NM_001318824, intron 3 of 6)	intron (NM_001318824, intron 3 of 6)	4227	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
229573	chr9	123322251	123323500	+	0	NA	Intergenic	Intergenic	-33322	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
94563	chr17	29619201	29619880	+	0	NA	intron (NM_032854, intron 2 of 9)	intron (NM_032854, intron 2 of 9)	-1423	NM_001351301	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
36991	chr11	11871271	11871630	+	0	NA	intron (NM_001372093, intron 2 of 29)	AluSc|SINE|Alu	29478	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
226770	chr9	76460301	76460600	+	0	NA	intron (NM_001490, intron 2 of 3)	intron (NM_001490, intron 2 of 3)	1268	NM_001490	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
190328	chr5	179622501	179623200	+	0	NA	intron (NM_001364248, intron 2 of 12).2	intron (NM_001364248, intron 2 of 12).2	551	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
17553	chr1	156803851	156803950	+	0	NA	Intergenic	MIR3|SINE|MIR	-11850	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
207615	chr7	44986031	44987600	+	0	NA	promoter-TSS (NR_003697)	promoter-TSS (NR_003697)	-119	NR_152596	285958		NR_003697	ENSG00000232956	SNHG15	C7orf40|Linc-Myo1g|MYO1GUT	small nucleolar RNA host gene 15	ncRNA
170551	chr3	186784001	186784680	+	0	NA	promoter-TSS (NR_002587)	promoter-TSS (NR_002587)	-456	NR_002587	619567		NR_002587	ENSG00000238942	SNORD2	R39B|SNR39B	small nucleolar RNA, C/D box 2	snoRNA
221548	chr8	124888371	124889050	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-53298	NR_027321	157381		NR_027321	ENSG00000249816	LINC00964	-	long intergenic non-protein coding RNA 964	ncRNA
7580	chr1	35178251	35178650	+	0	NA	intron (NR_136702, intron 9 of 11)	intron (NR_136702, intron 9 of 11)	14695	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
87727	chr16	75108851	75109730	+	0	NA	3' UTR (NM_032268, exon 5 of 5)	3' UTR (NM_032268, exon 5 of 5)	7482	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
40262	chr11	63766951	63767700	+	0	NA	intron (NM_001144936, intron 1 of 4)	intron (NM_001144936, intron 1 of 4)	1450	NM_001144936	65998		NM_023941	ENSG00000188070	ZFTA	C11orf95	zinc finger translocation associated	protein-coding
131269	chr2	96062801	96063700	+	0	NA	Intergenic	Intergenic	-27276	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
201267	chr6	144180651	144180750	+	0	NA	intron (NM_003764, intron 1 of 1)	THE1A|LTR|ERVL-MaLR	30183	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
38150	chr11	35525571	35525730	+	0	NA	promoter-TSS (NM_001001991)	promoter-TSS (NM_001001991)	-34	NM_001001991	25891		NM_015430	ENSG00000149090	PAMR1	DKFZP586H2123|FP938|RAMP	peptidase domain containing associated with muscle regeneration 1	protein-coding
160662	chr3	31829001	31829200	+	0	NA	intron (NM_001174060, intron 3 of 10)	intron (NM_001174060, intron 3 of 10)	124887	NR_049771	100874206		NR_049771	ENSG00000232490	OSBPL10-AS1	-	OSBPL10 antisense RNA 1	ncRNA
210496	chr7	100172871	100173300	+	0	NA	intron (NM_152742, intron 5 of 9)	AluSx4|SINE|Alu	4296	NM_152742	221914		NM_152742	ENSG00000213420	GPC2	-	glypican 2	protein-coding
77074	chr15	78900321	78900780	+	0	NA	Intergenic	AluSz|SINE|Alu	27561	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
102011	chr17	74785201	74785630	+	0	NA	intron (NM_017728, intron 2 of 9)	intron (NM_017728, intron 2 of 9)	8916	NM_017728	54868		NM_017728	ENSG00000109066	TMEM104	SLC38A12	transmembrane protein 104	protein-coding
128012	chr2	47072751	47073150	+	0	NA	intron (NM_020458, intron 19 of 19)	intron (NM_020458, intron 19 of 19)	82358	NM_001163561	285051		NM_173649	ENSG00000239605	STPG4	C2orf61|GSE	sperm-tail PG-rich repeat containing 4	protein-coding
124952	chr2	8659671	8659830	+	0	NA	Intergenic	Intergenic	22111	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
212510	chr7	128698351	128698650	+	0	NA	Intergenic	Intergenic	-10561	NR_104243	84691		NM_032599	ENSG00000135248	GARIN1B	FAM137A|FAM71F1|GARI-L1|GARIL1|NYD-SP18	golgi associated RAB2 interactor 1B	protein-coding
83709	chr16	28497371	28497600	+	0	NA	exon (NM_018690, exon 2 of 4)	exon (NM_018690, exon 2 of 4)	2842	NM_018690	55911		NM_018690	ENSG00000184730	APOBR	APOB100R|APOB48R	apolipoprotein B receptor	protein-coding
179346	chr4	183096671	183096830	+	0	NA	TTS (NR_024008)	TTS (NR_024008)	2449	NR_024008	152641		NM_153008	ENSG00000251359	WWC2-AS2	C4orf38	WWC2 antisense RNA 2	ncRNA
21114	chr1	203612951	203613450	+	0	NA	Intergenic	Intergenic	-13587	NM_001001396	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
73963	chr15	51831621	51832080	+	0	NA	intron (NM_014547, intron 1 of 9)	intron (NM_014547, intron 1 of 9)	2197	NM_014547	29766		NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
173110	chr4	6443451	6443750	+	0	NA	intron (NM_001206995, intron 2 of 9)	MIRb|SINE|MIR	-22482	NM_001206996	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
118700	chr19	38211171	38211600	+	0	NA	3' UTR (NM_001135156, exon 12 of 12)	3' UTR (NM_001135156, exon 12 of 12)	12837	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
80294	chr16	2259601	2259800	+	0	NA	intron (NM_080594, intron 6 of 7)	AluY|SINE|Alu	7637	NM_001286625	10921		NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
48945	chr12	12728251	12729000	+	0	NA	intron (NM_001130415, intron 1 of 1)	AluJb|SINE|Alu	2708	NM_001130415	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
167855	chr3	134242971	134243330	+	0	NA	intron (NM_001005861, intron 1 of 14)	intron (NM_001005861, intron 1 of 14)	7594	NM_001005861	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
229240	chr9	114989101	114989300	+	0	NA	Intergenic	L2b|LINE|L2	-58605	NM_001252290	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
124602	chr2	946221	946880	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-4299	NM_018968	54221		NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	syntrophin gamma 2	protein-coding
39102	chr11	48045871	48046030	+	0	NA	intron (NM_002843, intron 1 of 24)	L3|LINE|CR1	-50832	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
76484	chr15	74891521	74891850	+	0	NA	intron (NM_001289157, intron 3 of 6)	intron (NM_001289157, intron 3 of 6)	1643	NM_001289157	4351		NM_002435	ENSG00000178802	MPI	CDG1B|PMI|PMI1	mannose phosphate isomerase	protein-coding
121082	chr19	45888501	45888700	+	0	NA	Intergenic	AluY|SINE|Alu	-2459	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
8840	chr1	43274251	43274730	+	0	NA	TTS (NM_001320244)	TTS (NM_001320244)	4507	NM_144626	128218		NM_144626	ENSG00000179178	TMEM125	-	transmembrane protein 125	protein-coding
185101	chr5	119238851	119239550	+	0	NA	intron (NM_001290321, intron 41 of 43)	intron (NM_001290321, intron 41 of 43)	-29559	NM_001286815	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
164153	chr3	56766871	56767030	+	0	NA	intron (NM_001289698, intron 3 of 10)	L1ME4a|LINE|L1	8767	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
15898	chr1	151547651	151547950	+	0	NA	intron (NM_001126337, intron 1 of 11)	intron (NM_001126337, intron 1 of 11)	2004	NR_030280	693139		NR_030280	ENSG00000207606	MIR554	MIRN554|hsa-mir-554	microRNA 554	ncRNA
199997	chr6	128327951	128328300	+	0	NA	intron (NM_001291981, intron 2 of 32).2	LTR41B|LTR|ERVL	192474	NM_001291982	5796		NM_002844	ENSG00000152894	PTPRK	R-PTP-kappa	protein tyrosine phosphatase receptor type K	protein-coding
224059	chr9	3528351	3529200	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-2774	NM_134428	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
158888	chr3	9909371	9909530	+	0	NA	intron (NM_153480, intron 8 of 15)	intron (NM_153480, intron 8 of 15)	6602	NM_153480	132014		NM_144640	ENSG00000163701	IL17RE	-	interleukin 17 receptor E	protein-coding
228919	chr9	113112851	113113580	+	0	NA	intron (NR_024366, intron 1 of 2)	CpG	319	NR_024366	286333		NR_024366	ENSG00000231528	FAM225A	C9orf109|LINC00256A|NCRNA00256A	family with sequence similarity 225 member A	ncRNA
212767	chr7	129951321	129951590	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	1505	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
155803	chr22	39304651	39305200	+	0	NA	Intergenic	AluSx|SINE|Alu	8986	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
133248	chr2	113275921	113276250	+	0	NA	intron (NM_013952, intron 2 of 11)	intron (NM_013952, intron 2 of 11)	2836	NM_013953	7849		NM_003466	ENSG00000125618	PAX8	PAX-8	paired box 8	protein-coding
40591	chr11	64449501	64450330	+	0	NA	non-coding (NR_073177, exon 2 of 2)	non-coding (NR_073177, exon 2 of 2)	858	NR_073177	100996455		NR_073177	ENSG00000181908	LINC02724	-	long intergenic non-protein coding RNA 2724	ncRNA
92514	chr17	8897071	8897730	+	0	NA	intron (NM_001142633, intron 5 of 18)	intron (NM_001142633, intron 5 of 18)	15117	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
214339	chr7	149439601	149439830	+	0	NA	intron (NM_015694, intron 4 of 5)	Charlie2b|DNA|hAT-Charlie	21347	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
105295	chr17	82496731	82498180	+	0	NA	Intergenic	CpG	-22277	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
237111	chrX	104253851	104254150	+	0	NA	intron (NM_153448, intron 2 of 3)	intron (NM_153448, intron 2 of 3)	933	NM_153448	80712		NM_153448	ENSG00000123576	ESX1	ESX1L|ESXR1	ESX homeobox 1	protein-coding
60142	chr13	39765871	39766130	+	0	NA	intron (NM_001145079, intron 18 of 18)	intron (NM_001145079, intron 18 of 18)	-101865	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
16970	chr1	155948771	155949130	+	0	NA	intron (NM_004723, intron 21 of 21)	AluJb|SINE|Alu	2386	NR_106796	102465442		NR_106796	ENSG00000277817	MIR6738	hsa-mir-6738	microRNA 6738	ncRNA
181430	chr5	40828021	40828680	+	0	NA	3' UTR (NM_000997, exon 4 of 4)	3' UTR (NM_000997, exon 4 of 4)	4385	NR_002583	619564		NR_002583	ENSG00000212296	SNORD72	HBII-240	small nucleolar RNA, C/D box 72	snoRNA
238063	chrX	135973251	135974830	+	0	NA	promoter-TSS (NM_001330000)	promoter-TSS (NM_001330000)	-52	NM_173470	93380		NM_173470	ENSG00000169446	MMGT1	EMC5|TMEM32	membrane magnesium transporter 1	protein-coding
210837	chr7	100971521	100971980	+	0	NA	intron (NM_001164462, intron 1 of 11)	intron (NM_001164462, intron 1 of 11)	2127	NM_001164462	10071		NM_001164462	ENSG00000205277	MUC12	MUC-11|MUC-12|MUC11	mucin 12, cell surface associated	protein-coding
101064	chr17	64836351	64838330	+	0	NA	promoter-TSS (NR_024386)	promoter-TSS (NR_024386)	-156	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
111898	chr19	4678771	4679750	+	0	NA	promoter-TSS (NR_164163)	promoter-TSS (NR_164163)	-22	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
221989	chr8	130002951	130003450	+	0	NA	intron (NM_001353269, intron 1 of 10)	AluJb|SINE|Alu	5253	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
151818	chr22	18386071	18386450	+	0	NA	intron (NR_165634, intron 1 of 11)	HSATI|Satellite|Satellite	296	NR_136569	729461		NM_201401	ENSG00000274044	FAM230J	LINC01660	family with sequence similarity 230 member J	ncRNA
3477	chr1	15967271	15967430	+	0	NA	intron (NM_001324138, intron 2 of 14)	AluJb|SINE|Alu	8751	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
15191	chr1	149175651	149176000	+	0	NA	Intergenic	CpG	25321	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
11199	chr1	88655651	88655980	+	0	NA	intron (NR_110682, intron 1 of 3)	intron (NR_110682, intron 1 of 3)	-28329	NM_001320707	5586		NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
134581	chr2	144248601	144248800	+	0	NA	promoter-TSS (NR_148872)	promoter-TSS (NR_148872)	-1	NR_148872	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
43635	chr11	84249321	84249400	+	0	NA	intron (NM_001142700, intron 1 of 19)	intron (NM_001142700, intron 1 of 19)	23920	NR_165353	1740		NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
167961	chr3	136672671	136673030	+	0	NA	intron (NM_005862, intron 1 of 33)	intron (NM_005862, intron 1 of 33)	79528	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
103936	chr17	79836721	79840200	+	0	NA	intron (NM_003655, intron 2 of 4)	intron (NM_003655, intron 2 of 4)	980	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
89690	chr16	89389651	89389750	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-41218	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
165558	chr3	101510401	101510800	+	0	NA	intron (NM_001077203, intron 1 of 22)	AluSx1|SINE|Alu	2612	NM_001282802	57337		NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
43412	chr11	77332201	77332780	+	0	NA	intron (NR_164797, intron 13 of 14)	intron (NR_164797, intron 13 of 14)	-30804	NM_182833	220032		NM_182833	ENSG00000178795	GDPD4	GDE6	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding
219480	chr8	73747901	73748650	+	0	NA	promoter-TSS (NM_001164384)	promoter-TSS (NM_001164384)	-567	NM_001164384	27067		NM_014393	ENSG00000040341	STAU2	39K2|39K3	staufen double-stranded RNA binding protein 2	protein-coding
156600	chr22	41540951	41541050	+	0	NA	intron (NM_138338, intron 2 of 6)	MIRb|SINE|MIR	3470	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
127659	chr2	43161571	43162930	+	0	NA	Intergenic	Intergenic	-59805	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
84268	chr16	30052941	30054030	+	0	NA	5' UTR (NM_001365307, exon 1 of 13)	5' UTR (NM_001365307, exon 1 of 13)	334	NM_001365307	112694756		NM_001365304	ENSG00000285043	LOC112694756	ALDA|ALDOA	uncharaterized LOC112694756	protein-coding
217567	chr8	29416921	29417480	+	0	NA	Intergenic	HAL1|LINE|L1	-66516	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
130589	chr2	85857971	85858130	+	0	NA	intron (NM_001354224, intron 3 of 7)	intron (NM_001354224, intron 3 of 7)	-3875	NM_001354247	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
146951	chr20	52191201	52192780	+	0	NA	promoter-TSS (NM_018197)	promoter-TSS (NM_018197)	-5	NM_199427	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
200587	chr6	136559251	136559350	+	0	NA	intron (NM_005923, intron 28 of 29)	AluSx|SINE|Alu	-8481	NM_003980	9053		NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
8063	chr1	38973221	38973480	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-17894	NM_001136275	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
11397	chr1	89682251	89682550	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	49280	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
160916	chr3	36634851	36634950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	104961	NM_033403	85443		NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin like kinase 3	protein-coding
75130	chr15	64574121	64574380	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	113672	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
236452	chrX	71557871	71558230	+	0	NA	intron (NM_181672, intron 12 of 21)	AluJb|SINE|Alu	-19974	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
113878	chr19	10667721	10667980	+	0	NA	intron (NM_153464, intron 1 of 17)	LSU-rRNA_Hsa|rRNA|rRNA	13504	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
166247	chr3	112302121	112302700	+	0	NA	promoter-TSS (NR_147411)	promoter-TSS (NR_147411)	-68	NR_147411	105374042		NR_147411	ENSG00000239482	LOC105374042	-	uncharacterized LOC105374042	ncRNA
89665	chr16	89366301	89366700	+	0	NA	intron (NR_045839, intron 2 of 9)	L1PA14|LINE|L1	46048	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
22503	chr1	221742901	221744330	+	0	NA	Intergenic	Intergenic	-1439	NR_111940	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
220051	chr8	93739451	93739550	+	0	NA	promoter-TSS (NR_027259)	promoter-TSS (NR_027259)	-611	NR_027259	55472		NM_018608	ENSG00000279331	RBM12B-AS1	C8orf39|PRO1905	RBM12B antisense RNA 1	ncRNA
210004	chr7	93114921	93115180	+	0	NA	intron (NM_017654, intron 1 of 2)	L1MEg2|LINE|L1	2929	NM_017654	54809		NM_017654	ENSG00000205413	SAMD9	C7orf5|DRIF1|M7MLS2|MIRAGE|NFTC|OEF1|OEF2	sterile alpha motif domain containing 9	protein-coding
171048	chr3	195255451	195256080	+	0	NA	intron (NM_152531, intron 1 of 3)	MIR3|SINE|MIR	-7845	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
156950	chr22	42343321	42344480	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	25308	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
139293	chr2	219515901	219516500	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	1718	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
127909	chr2	46302421	46302700	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	5153	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
6009	chr1	27031601	27031930	+	0	NA	Intergenic	Intergenic	-18915	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
69030	chr14	91818771	91819200	+	0	NA	intron (NM_001128596, intron 1 of 11)	L1ME2|LINE|L1	17470	NM_152332	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
30892	chr10	86967951	86968050	+	0	NA	promoter-TSS (NM_006829)	promoter-TSS (NM_006829)	-482	NM_006829	10974		NM_006829	ENSG00000148671	ADIRF	AFRO|APM2|C10orf116|apM-2	adipogenesis regulatory factor	protein-coding
3425	chr1	15839471	15840030	+	0	NA	intron (NR_024279, intron 1 of 1)	AluSc|SINE|Alu	-7957	NM_015001	23013		NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RATARS|RBM15C|SHARP	spen family transcriptional repressor	protein-coding
129457	chr2	69564801	69565880	+	0	NA	intron (NM_001371577, intron 2 of 14)	MER102a|DNA|hAT-Charlie	-45169	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
130660	chr2	86197751	86197850	+	0	NA	Intergenic	AluY|SINE|Alu	-1633	NM_001363782	51318		NM_016622	ENSG00000132313	MRPL35	L35mt|MRP-L35|bL35m	mitochondrial ribosomal protein L35	protein-coding
138101	chr2	202269351	202271250	+	0	NA	intron (NM_015934, intron 1 of 14)	L1ME1|LINE|L1	4537	NM_015934	51602		NM_015934	ENSG00000055044	NOP58	HSPC120|NOP5|NOP5/NOP58	NOP58 ribonucleoprotein	protein-coding
146601	chr20	50129851	50130150	+	0	NA	intron (NM_001162505, intron 3 of 5)	intron (NM_001162505, intron 3 of 5)	-14043	NM_022442	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
210331	chr7	99497471	99498500	+	0	NA	intron (NM_001345967, intron 1 of 1)	MER44A|DNA|TcMar-Tigger	2296	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
21535	chr1	205919001	205919350	+	0	NA	intron (NM_134325, intron 18 of 21)	intron (NM_134325, intron 18 of 21)	-15738	NR_110984	103021296		NR_110983		SLC26A9-AS1	-	SLC26A9 and RAB7B antisense RNA 1	ncRNA
30923	chr10	87203221	87204180	+	0	NA	Intergenic	Intergenic	-21748	NM_001099338	728118		NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
230166	chr9	127774321	127774780	+	0	NA	intron (NM_170600, intron 1 of 11)	intron (NM_170600, intron 1 of 11)	-3181	NM_001252334	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
179073	chr4	166580171	166580400	+	0	NA	Intergenic	Intergenic	654141	NM_001204353	50859		NM_016950	ENSG00000196104	SPOCK3	HSAJ1454|TES-3|TICN3	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	protein-coding
192981	chr6	28056101	28056500	+	0	NA	Intergenic	Intergenic	-17016	NM_001355425	442179		NM_001355425	ENSG00000220721	OR1F12P	OR1F12|OR1F12Q|OR6-12|hs6M1-35P	olfactory receptor family 1 subfamily F member 12, pseudogene	pseudo
166323	chr3	112793771	112794130	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-8528	NR_149027	100129297		NR_149026		CD200R1L-AS1	-	CD200R1L antisense RNA 1	ncRNA
146865	chr20	51478601	51479000	+	0	NA	intron (NM_173091, intron 3 of 9)	L2a|LINE|L2	-25823	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
110207	chr19	1745271	1745850	+	0	NA	Intergenic	Intergenic	-7946	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
26848	chr10	24863921	24864380	+	0	NA	intron (NM_020200, intron 4 of 8)	Tigger1|DNA|TcMar-Tigger	88456	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
217710	chr8	30139721	30140530	+	0	NA	intron (NM_001100916, intron 1 of 2)	AluSx1|SINE|Alu	4540	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
159504	chr3	14398671	14399250	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-3616	NM_001134367	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
81586	chr16	10318671	10318830	+	0	NA	Intergenic	Intergenic	-67311	NM_024997	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
82182	chr16	14934601	14935700	+	0	NA	intron (NR_146231, intron 29 of 38)	intron (NR_146231, intron 29 of 38)	-2293	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
26141	chr10	13799151	13799730	+	0	NA	intron (NM_018027, intron 4 of 24)	AluSx3|SINE|Alu	-91873	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
64417	chr14	24181001	24181250	+	0	NA	TTS (NM_005132)	TTS (NM_005132)	7691	NM_024658	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
194492	chr6	33256451	33256950	+	0	NA	intron (NM_001289175, intron 17 of 19).6	AluSx|SINE|Alu	7164	NR_044997	414765		NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25	ncRNA
91103	chr17	3662601	3662800	+	0	NA	TTS (NM_014604)	TTS (NM_014604)	5878	NM_014604	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
6499	chr1	28505571	28506820	+	0	NA	intron (NR_002909, intron 1 of 2)	AluSx|SINE|Alu	152	NM_001381866	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
4297	chr1	20100971	20101130	+	0	NA	Intergenic	Intergenic	18486	NM_012400	26279		NM_012400	ENSG00000117215	PLA2G2D	PLA2IID|SPLASH|sPLA2-IID|sPLA2S	phospholipase A2 group IID	protein-coding
173069	chr4	6177351	6178280	+	0	NA	intron (NM_144720, intron 1 of 12)	(GCCTCT)n|Simple_repeat|Simple_repeat	16804	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
38411	chr11	44979871	44980280	+	0	NA	Intergenic	MIRb|SINE|MIR	6173	NR_026681	221122		NR_026681	ENSG00000254654	LINC02685	-	long intergenic non-protein coding RNA 2685	ncRNA
198964	chr6	110882951	110883200	+	0	NA	intron (NM_001287216, intron 1 of 4)	AluJb|SINE|Alu	8291	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
112086	chr19	5370001	5370200	+	0	NA	Intergenic	L2a|LINE|L2	-29288	NM_130854	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
78221	chr15	90646101	90646300	+	0	NA	TTS (NM_022769)	TTS (NM_022769)	-14034	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
92135	chr17	7624451	7624750	+	0	NA	intron (NM_001289114, intron 1 of 7)	AluJb|SINE|Alu	3221	NM_133491	112483		NM_133491	ENSG00000141504	SAT2	SSAT-2|SSAT2	spermidine/spermine N1-acetyltransferase family member 2	protein-coding
49508	chr12	25348571	25348800	+	0	NA	Intergenic	Intergenic	-97756	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
227002	chr9	83686251	83686550	+	0	NA	intron (NM_053067, intron 1 of 9)	FRAM|SINE|Alu	-21435	NR_135839	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
34023	chr10	124710601	124711000	+	0	NA	intron (NR_120630, intron 2 of 2)	MIRb|SINE|MIR	6772	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
130948	chr2	87511071	87511750	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	41460	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
124420	chr19	58455271	58455830	+	0	NA	exon (NM_207395, exon 4 of 4)	exon (NM_207395, exon 4 of 4)	3928	NM_207395	388569		NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
13084	chr1	111570701	111571150	+	0	NA	intron (NM_001370216, intron 1 of 7)	MSTB2|LTR|ERVL-MaLR	-6922	NM_001302680	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
46523	chr11	128455171	128455530	+	0	NA	Intergenic	Intergenic	66960	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
2489	chr1	9680051	9680600	+	0	NA	TTS (NR_126368)	TTS (NR_126368)	7249	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
20252	chr1	193479201	193480000	+	0	NA	Intergenic	Intergenic	174855	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
37817	chr11	33037801	33038000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1672	NM_018393	55346		NM_018393	ENSG00000176148	TCP11L1	dJ85M6.3	t-complex 11 like 1	protein-coding
109394	chr19	664771	666500	+	0	NA	Intergenic	AluSx|SINE|Alu	-2421	NM_001366018	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
193514	chr6	30582901	30583100	+	0	NA	intron (NM_001025091, intron 9 of 24).2	intron (NM_001025091, intron 9 of 24).2	-1332	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
47889	chr12	6721851	6722800	+	0	NA	Intergenic	Intergenic	-1721	NM_001164095	50813		NM_016319	ENSG00000111652	COPS7A	CSN7|CSN7A|SGN7a	COP9 signalosome subunit 7A	protein-coding
174559	chr4	40218751	40219300	+	0	NA	intron (NM_001278360, intron 2 of 3)	intron (NM_001278360, intron 2 of 3)	21994	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
117734	chr19	29605351	29606930	+	0	NA	promoter-TSS (NM_006627)	promoter-TSS (NM_006627)	-143	NM_006627	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
7473	chr1	33126471	33127970	+	0	NA	Intergenic	Intergenic	45042	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
235484	chrX	46796521	46796830	+	0	NA	Intergenic	Intergenic	-37557	NM_032591	84679		NM_032591	ENSG00000065923	SLC9A7	MRX108|NHE-7|NHE7|SLC9A6	solute carrier family 9 member A7	protein-coding
232813	chr9	136718871	136719030	+	0	NA	intron (NM_152421, intron 2 of 4)	intron (NM_152421, intron 2 of 4)	6378	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
101408	chr17	67385171	67385900	+	0	NA	intron (NM_181671, intron 1 of 9)	LTR12|LTR|ERV1	8254	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
29511	chr10	70619201	70619450	+	0	NA	Intergenic	L1M8|LINE|L1	-16537	NM_005041	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
108605	chr18	75240571	75240730	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	29853	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
2258	chr1	8912821	8913080	+	0	NA	Intergenic	Intergenic	-32918	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
146739	chr20	50793151	50793800	+	0	NA	Intergenic	Intergenic	-1419	NM_001010974	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
66948	chr14	65791401	65792530	+	0	NA	Intergenic	L2a|LINE|L2	320863	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
173363	chr4	7856771	7856930	+	0	NA	intron (NM_001371091, intron 4 of 17)	MIRb|SINE|MIR	15458	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
86407	chr16	66750901	66752230	+	0	NA	promoter-TSS (NR_133569)	promoter-TSS (NR_133569)	44	NM_006141	1783		NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding
67579	chr14	71592051	71592530	+	0	NA	intron (NM_001354286, intron 6 of 24)	intron (NM_001354286, intron 6 of 24)	5992	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
102884	chr17	76520221	76520830	+	0	NA	Intergenic	Intergenic	-7061	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
20434	chr1	198380971	198381300	+	0	NA	Intergenic	Intergenic	159545	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
105413	chr17	82846321	82846580	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-6428	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
189704	chr5	176517221	176518030	+	0	NA	Intergenic	AluSg7|SINE|Alu	19777	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
108955	chr18	79515001	79515850	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-63857	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
104015	chr17	80113071	80113480	+	0	NA	exon (NM_001079804, exon 15 of 20)	exon (NM_001079804, exon 15 of 20)	11694	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
189953	chr5	177412271	177413630	+	0	NA	Intergenic	Intergenic	-3386	NM_000505	2161		NM_000505	ENSG00000131187	F12	HAE3|HAEX|HAF	coagulation factor XII	protein-coding
90256	chr17	875971	876800	+	0	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	-12274	NM_001205319	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
120732	chr19	45360151	45360250	+	0	NA	intron (NM_001130867, intron 11 of 11)	AluYj4|SINE|Alu	10373	NM_000400	2068		NM_000400	ENSG00000104884	ERCC2	COFS2|EM9|TFIIH|TTD|TTD1|XPD	ERCC excision repair 2, TFIIH core complex helicase subunit	protein-coding
117633	chr19	23394901	23396100	+	0	NA	promoter-TSS (NM_001300951)	promoter-TSS (NM_001300951)	-29	NM_001300951	7644		NM_003430	ENSG00000167232	ZNF91	HPF7|HTF10	zinc finger protein 91	protein-coding
231705	chr9	131728151	131730130	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	8307	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
132585	chr2	106581921	106582900	+	0	NA	Intergenic	Intergenic	95046	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
140394	chr2	233076601	233077300	+	0	NA	intron (NM_001017915, intron 1 of 26).2	L1ME4b|LINE|L1	16608	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
70159	chr14	100303001	100303500	+	0	NA	intron (NM_001352821, intron 1 of 4)	intron (NM_001352821, intron 1 of 4)	3194	NM_001291814	123096		NM_152333	ENSG00000197119	SLC25A29	C14orf69|CACL|ORNT3	solute carrier family 25 member 29	protein-coding
134306	chr2	135982401	135982800	+	0	NA	intron (NM_001293312, intron 1 of 14)	AluSx3|SINE|Alu	-2576	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
177935	chr4	136571401	136571600	+	0	NA	Intergenic	(TTTGG)n|Simple_repeat|Simple_repeat	-622256	NR_134640	729307		NR_134640		LINC02510	-	long intergenic non-protein coding RNA 2510	ncRNA
189603	chr5	175796371	175797530	+	0	NA	intron (NM_006650, intron 1 of 4)	CpG	417	NM_006650	10814		NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
179379	chr4	183507921	183508180	+	0	NA	intron (NM_001291959, intron 1 of 1)	intron (NM_001291959, intron 1 of 1)	1968	NM_001291959	3622		NM_001564	ENSG00000168556	ING2	ING1L|p33ING2	inhibitor of growth family member 2	protein-coding
9118	chr1	45339371	45341450	+	0	NA	promoter-TSS (NM_001293195)	promoter-TSS (NM_001293195)	30	NM_001048171	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
200806	chr6	137903701	137903900	+	0	NA	Intergenic	Intergenic	-35567	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
166029	chr3	108489551	108490330	+	0	NA	intron (NM_014981, intron 10 of 41)	intron (NM_014981, intron 10 of 41)	39382	NM_014981	22989		NM_014981	ENSG00000144821	MYH15	-	myosin heavy chain 15	protein-coding
159165	chr3	12808321	12808580	+	0	NA	intron (NM_001162499, intron 4 of 14)	MIRb|SINE|MIR	11770	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
98613	chr17	47760551	47760950	+	0	NA	Intergenic	Intergenic	27514	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
226123	chr9	63052701	63052900	+	0	NA	Intergenic	TAR1|Satellite|telo	34805	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
66771	chr14	64543721	64544550	+	0	NA	TTS (NM_021979)	TTS (NM_021979)	3667	NM_021979	3306		NM_021979	ENSG00000126803	HSPA2	HSP70-2|HSP70-3	heat shock protein family A (Hsp70) member 2	protein-coding
108861	chr18	79376071	79376450	+	0	NA	intron (NR_148360, intron 31 of 31)	intron (NR_148360, intron 31 of 31)	-19670	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
122862	chr19	50486851	50487700	+	0	NA	3' UTR (NM_175063, exon 8 of 8)	3' UTR (NM_175063, exon 8 of 8)	-10427	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
37034	chr11	12149751	12150050	+	0	NA	intron (NR_144417, intron 2 of 26)	intron (NR_144417, intron 2 of 26)	11510	NM_001282665	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
172702	chr4	2786061	2786650	+	0	NA	Intergenic	Intergenic	-6730	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
230198	chr9	127808771	127809300	+	0	NA	intron (NR_110170, intron 11 of 14)	intron (NR_110170, intron 11 of 14)	5854	NM_001018078	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
225874	chr9	38687471	38688000	+	0	NA	Intergenic	Intergenic	66647	NR_027294	158228		NR_027294		FAM201A	C9orf122	family with sequence similarity 201 member A	ncRNA
201139	chr6	142902321	142903130	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	42451	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
197470	chr6	75283351	75285630	+	0	NA	promoter-TSS (NR_040081)	promoter-TSS (NR_040081)	302	NM_018247	55754		NM_018247	ENSG00000112697	TMEM30A	C6orf67|CDC50A	transmembrane protein 30A	protein-coding
131137	chr2	91501571	91502030	+	0	NA	Intergenic	AluSx3|SINE|Alu	158149	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
169777	chr3	172709821	172710150	+	0	NA	intron (NM_001146276, intron 1 of 4)	intron (NM_001146276, intron 1 of 4)	1082	NM_001146276	57552		NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
46372	chr11	126263771	126263930	+	0	NA	TTS (NM_001330446)	TTS (NM_001330446)	5045	NM_003139	6734		NM_003139	ENSG00000182934	SRPRA	DP|SRPR|Sralpha	SRP receptor subunit alpha	protein-coding
12289	chr1	100719701	100720630	+	0	NA	intron (NM_080682, intron 1 of 7)	intron (NM_080682, intron 1 of 7)	423	NM_001078	7412		NM_001078	ENSG00000162692	VCAM1	CD106|INCAM-100	vascular cell adhesion molecule 1	protein-coding
223706	chr8	144446071	144447250	+	0	NA	Intergenic	Intergenic	-2220	NM_013432	4796		NM_013432	ENSG00000160949	TONSL	IKBR|NFKBIL2|SEMDSP	tonsoku like, DNA repair protein	protein-coding
169621	chr3	171267521	171268380	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-161191	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
122998	chr19	50912571	50913000	+	0	NA	Intergenic	CpG	-2047	NM_004917	9622		NM_004917	ENSG00000167749	KLK4	AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein	kallikrein related peptidase 4	protein-coding
212889	chr7	130882651	130882950	+	0	NA	intron (NR_034120, intron 3 of 3)	MIR3|SINE|MIR	-5261	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
93833	chr17	20908071	20908920	+	0	NA	intron (NR_160710, intron 3 of 4)	CpG	-12332	NR_164128	339184		NM_001004306	ENSG00000291074	CCDC144NL	-	CCDC144A N-terminal like (pseudogene)	pseudo
175529	chr4	74448571	74448950	+	0	NA	intron (NM_001657, intron 2 of 5)	intron (NM_001657, intron 2 of 5)	3624	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
92353	chr17	8183601	8184180	+	0	NA	Intergenic	Intergenic	-3055	NR_039746	100616406		NR_039746	ENSG00000283160	MIR4521	mir-4521	microRNA 4521	ncRNA
158572	chr3	4571701	4571980	+	0	NA	intron (NM_002222, intron 4 of 57)	intron (NM_002222, intron 4 of 57)	78492	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
149303	chr21	28883601	28884000	+	0	NA	intron (NM_182749, intron 1 of 4)	FRAM|SINE|Alu	1567	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
186978	chr5	139698271	139698430	+	0	NA	Intergenic	Intergenic	22907	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
62783	chr13	108508401	108508600	+	0	NA	Intergenic	L1MB2|LINE|L1	-87405	NM_015011	23026		NM_015011	ENSG00000041515	MYO16	MYAP3|MYR8|Myo16b|NYAP3|PPP1R107	myosin XVI	protein-coding
96699	chr17	41369121	41369380	+	0	NA	intron (NM_002279, intron 1 of 6).2	intron (NM_002279, intron 1 of 6).2	563	NM_002279	3884		NM_002279	ENSG00000131738	KRT33B	HA3II|Ha-3II|K33B|KRTHA3A|KRTHA3B|hHa3-II	keratin 33B	protein-coding
66818	chr14	64749471	64750030	+	0	NA	3' UTR (NM_001308147, exon 17 of 17)	3' UTR (NM_001308147, exon 17 of 17)	35936	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
46901	chr11	134098651	134098830	+	0	NA	intron (NM_032801, intron 1 of 8)	intron (NM_032801, intron 1 of 8)	29668	NM_032801	83700		NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
18687	chr1	167409201	167409530	+	0	NA	intron (NM_001198786, intron 12 of 14)	intron (NM_001198786, intron 12 of 14)	80295	NM_001198783	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
125450	chr2	12074351	12074450	+	0	NA	intron (NR_110196, intron 2 of 5)	intron (NR_110196, intron 2 of 5)	67284	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
237105	chrX	104156221	104157400	+	0	NA	intron (NM_001012755, intron 1 of 1)	CpG	199	NM_001012755	401612		NM_001012755	ENSG00000269743	SLC25A53	MCART6	solute carrier family 25 member 53	protein-coding
153649	chr22	28797501	28798700	+	0	NA	intron (NM_005080, intron 2 of 4)	intron (NM_005080, intron 2 of 4)	2472	NM_001079539	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
174712	chr4	42641871	42642030	+	0	NA	intron (NM_001105529, intron 1 of 35)	intron (NM_001105529, intron 1 of 35)	15155	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
170449	chr3	185910151	185911220	+	0	NA	Intergenic	L2a|LINE|L2	27329	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
215487	chr7	158360201	158360400	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	172513	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
103832	chr17	79400501	79401900	+	0	NA	intron (NM_001082575, intron 2 of 14)	intron (NM_001082575, intron 2 of 14)	114948	NM_001082575	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
12938	chr1	110677951	110678050	+	0	NA	Intergenic	L1PA7|LINE|L1	-3060	NM_002232	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
31894	chr10	100326971	100327330	+	0	NA	intron (NM_016112, intron 2 of 15)	L3|LINE|CR1	3078	NM_001253837	9033		NM_016112	ENSG00000107593	PKD2L1	PCL|PKD2L|PKDL|TRPP3	polycystin 2 like 1, transient receptor potential cation channel	protein-coding
37947	chr11	34364271	34364430	+	0	NA	Intergenic	Intergenic	-6340	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
219399	chr8	70601221	70601700	+	0	NA	intron (NM_001317804, intron 2 of 11)	L2b|LINE|L2	6209	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
137737	chr2	197813001	197813430	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	8622	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
207739	chr7	48091271	48091700	+	0	NA	intron (NM_001287426, intron 3 of 9)	intron (NM_001287426, intron 3 of 9)	2220	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
132316	chr2	105330771	105330930	+	0	NA	Intergenic	Intergenic	-1115	NM_001142621	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
194937	chr6	35193421	35193930	+	0	NA	Intergenic	Intergenic	-20281	NM_152753	222663		NM_152753	ENSG00000146197	SCUBE3	CEGF3|SSFSC2	signal peptide, CUB domain and EGF like domain containing 3	protein-coding
144268	chr20	34562721	34563200	+	0	NA	intron (NM_080476, intron 11 of 11)	intron (NM_080476, intron 11 of 11)	4242	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
180694	chr5	21488521	21488780	+	0	NA	intron (NR_027026, intron 3 of 4)	Tigger17a|DNA|TcMar-Tigger	29170	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
160812	chr3	33022121	33022750	+	0	NA	intron (NM_000404, intron 11 of 15)	MIRb|SINE|MIR	70791	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
66111	chr14	59964951	59966030	+	0	NA	intron (NR_075071, intron 10 of 32)	L2|LINE|L2	45777	NM_001355272	341883		NM_198499	ENSG00000131951	LRRC9	-	leucine rich repeat containing 9	protein-coding
24447	chr1	243792951	243793450	+	0	NA	intron (NM_005465, intron 2 of 13)	intron (NM_005465, intron 2 of 13)	50082	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
111134	chr19	3273871	3274450	+	0	NA	intron (NM_021938, intron 3 of 12)	intron (NM_021938, intron 3 of 12)	48882	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
44303	chr11	102349051	102349550	+	0	NA	5' UTR (NM_001256163, exon 2 of 9)	5' UTR (NM_001256163, exon 2 of 9)	1926	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
100303	chr17	59794171	59794330	+	0	NA	intron (NM_030938, intron 7 of 11)	AluSg|SINE|Alu	-47016	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
102005	chr17	74774451	74775000	+	0	NA	intron (NR_130953, intron 2 of 6)	AluY|SINE|Alu	1620	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
62821	chr13	109762771	109763330	+	0	NA	intron (NM_003749, intron 1 of 1)	MER58A|DNA|hAT-Charlie	23533	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
73469	chr15	43508771	43509130	+	0	NA	intron (NM_005657, intron 1 of 27)	intron (NM_005657, intron 1 of 27)	1690	NM_005657	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
158465	chr22	50674271	50675700	+	0	NA	intron (NM_001372044, intron 3 of 23)	CpG-19385	2162	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
151668	chr22	17092301	17092500	+	0	NA	intron (NM_014339, intron 1 of 12)	MER21B|LTR|ERVL	7400	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
148795	chr21	8235151	8235600	+	0	NA	intron (NR_003287, intron 1 of 2)	MER39B|LTR|ERV1	-14130	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
180793	chr5	32278101	32279180	+	0	NA	intron (NM_001294344, intron 1 of 13)	MER5A|DNA|hAT-Charlie	34299	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
222148	chr8	132674251	132674350	+	0	NA	intron (NM_012472, intron 1 of 11)	intron (NM_012472, intron 1 of 11)	1245	NR_135908	23639		NM_012472	ENSG00000129295	DNAAF11	CILD19|LRRC6|LRTP|TSLRP|tilB	dynein axonemal assembly factor 11	protein-coding
234803	chrX	24022171	24023050	+	0	NA	intron (NM_030624, intron 2 of 3)	AluSz6|SINE|Alu	4576	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
185115	chr5	119280221	119281200	+	0	NA	intron (NM_001077654, intron 1 of 1)	L1MC5|LINE|L1	11951	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
51663	chr12	53058351	53058450	+	0	NA	exon (NM_015319, exon 15 of 29)	exon (NM_015319, exon 15 of 29)	1456	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
7876	chr1	36400521	36401800	+	0	NA	Intergenic	LTR2752|LTR|ERV1	-3252	NM_032881	84967		NM_032881	ENSG00000181817	LSM10	MST074|MSTP074	LSM10, U7 small nuclear RNA associated	protein-coding
62128	chr13	95678101	95678480	+	0	NA	intron (NM_006260, intron 1 of 11)	intron (NM_006260, intron 1 of 11)	1151	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
38210	chr11	36396271	36396430	+	0	NA	intron (NM_024841, intron 2 of 9)	MIRc|SINE|MIR	-4647	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
55001	chr12	96362371	96362530	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSz6|SINE|Alu	37989	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
51009	chr12	49676701	49676900	+	0	NA	intron (NM_175736, intron 1 of 25)	intron (NM_175736, intron 1 of 25)	30605	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
139401	chr2	222318101	222318530	+	0	NA	promoter-TSS (NR_136638)	promoter-TSS (NR_136638)	-156	NR_136638	440934		NR_136638	ENSG00000291155	CT75	-	cancer/testis associated transcript 75	ncRNA
110513	chr19	2065151	2066050	+	0	NA	Intergenic	L1MB7|LINE|L1	-14356	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
150593	chr21	43336601	43338300	+	0	NA	Intergenic	Intergenic	-5411	NR_103713	100126693		NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
128157	chr2	48446801	48447000	+	0	NA	intron (NM_001193475, intron 1 of 19)	AluSx1|SINE|Alu	6131	NM_001193475	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
56732	chr12	120126701	120126900	+	0	NA	TTS (NM_006836)	TTS (NM_006836)	-10047	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
198250	chr6	99421301	99421650	+	0	NA	intron (NM_001322406, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	-3396	NR_125843	101927365		NR_125843		PNISR-AS1	-	PNISR antisense RNA 1	ncRNA
19446	chr1	174797401	174798000	+	0	NA	intron (NM_001366447, intron 18 of 20)	(TG)n|Simple_repeat|Simple_repeat	-2038	NM_001330989	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
47676	chr12	6345551	6346500	+	0	NA	TTS (NM_001038)	TTS (NM_001038)	-3949	NM_001346092	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
111616	chr19	4114001	4114200	+	0	NA	intron (NM_030662, intron 2 of 10)	AluJr4|SINE|Alu	10022	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
151696	chr22	17266621	17266900	+	0	NA	promoter-TSS (NR_038398)	promoter-TSS (NR_038398)	-27	NR_038398	27442		NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3	ncRNA
207951	chr7	54394801	54395000	+	0	NA	Intergenic	L1MCa|LINE|L1	64203	NR_120516	102723605		NR_120515	ENSG00000231427	LINC01445	-	long intergenic non-protein coding RNA 1445	ncRNA
230007	chr9	126979501	126979700	+	0	NA	intron (NM_001190729, intron 4 of 17)	intron (NM_001190729, intron 4 of 17)	17375	NM_001366401	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
42680	chr11	72598251	72598550	+	0	NA	intron (NM_001243784, intron 4 of 30)	intron (NM_001243784, intron 4 of 30)	16730	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
6270	chr1	27591171	27591680	+	0	NA	intron (NM_001029882, intron 1 of 6)	MIR3|SINE|MIR	12069	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
21254	chr1	204380871	204381030	+	0	NA	Intergenic	Intergenic	-11231	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
100009	chr17	57876471	57876830	+	0	NA	intron (NM_001292025, intron 3 of 10)	intron (NM_001292025, intron 3 of 10)	-26606	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
211110	chr7	102512601	102513630	+	0	NA	intron (NM_001367767, intron 1 of 20)	L2b|LINE|L2	4662	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
54416	chr12	90298701	90299500	+	0	NA	intron (NR_135018, intron 2 of 2)	intron (NR_135018, intron 2 of 2)	5782	NR_135018	105369893		NR_135018	ENSG00000258183	LINC02392	-	long intergenic non-protein coding RNA 2392	ncRNA
78420	chr15	92158451	92158780	+	0	NA	intron (NM_013272, intron 9 of 9)	intron (NM_013272, intron 9 of 9)	-235266	NM_006011	8128		NM_006011	ENSG00000140557	ST8SIA2	HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding
43515	chr11	81674351	81674450	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	216436	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
164528	chr3	63933501	63933700	+	0	NA	intron (NM_001177387, intron 3 of 12)	intron (NM_001177387, intron 3 of 12)	21488	NM_001377406	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
17314	chr1	156459551	156460080	+	0	NA	Intergenic	Intergenic	-30267	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
21432	chr1	205343951	205344730	+	0	NA	5' UTR (NM_001271863, exon 4 of 9)	5' UTR (NM_001271863, exon 4 of 9)	12582	NM_018203	55220		NM_018203	ENSG00000162873	KLHDC8A	-	kelch domain containing 8A	protein-coding
85820	chr16	56990801	56991330	+	0	NA	intron (NR_169520, intron 1 of 47)	MIRc|SINE|MIR	1508	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
162348	chr3	47802401	47804030	+	0	NA	promoter-TSS (NM_138615)	promoter-TSS (NM_138615)	77	NR_075079	22907		NM_014966	ENSG00000132153	DHX30	DDX30|NEDMIAL|RETCOR	DExH-box helicase 30	protein-coding
204163	chr7	2411651	2412080	+	0	NA	intron (NM_018641, intron 1 of 1)	intron (NM_018641, intron 1 of 1)	8254	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
30501	chr10	79311771	79312130	+	0	NA	intron (NM_020338, intron 24 of 24)	intron (NM_020338, intron 24 of 24)	-35519	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
237564	chrX	120770001	120770200	+	0	NA	Intergenic	Intergenic	105825	NM_001145718	643311		NM_001145718	ENSG00000236446	CT47B1	CT47.13|CT47A13	cancer/testis antigen family 47 member B1	protein-coding
232286	chr9	134444971	134445130	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	38490	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
159289	chr3	12979521	12979980	+	0	NA	intron (NM_001134382, intron 1 of 13)	MER113|DNA|hAT-Charlie	7351	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
207601	chr7	44971701	44972130	+	0	NA	intron (NM_033054, intron 6 of 21)	intron (NM_033054, intron 6 of 21)	7100	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
53553	chr12	67541371	67541800	+	0	NA	intron (NR_103861, intron 1 of 2)	intron (NR_103861, intron 1 of 2)	21503	NR_103861	100507175		NR_103861	ENSG00000203585	LINC02408	-	long intergenic non-protein coding RNA 2408	ncRNA
218180	chr8	41984601	41985000	+	0	NA	intron (NM_001305878, intron 3 of 13)	AluY|SINE|Alu	-66950	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
22921	chr1	225922451	225922830	+	0	NA	promoter-TSS (NR_106799)	promoter-TSS (NR_106799)	-498	NR_106799	102466270		NR_106799	ENSG00000284519	MIR6741	hsa-mir-6741	microRNA 6741	ncRNA
92634	chr17	10120571	10121280	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	77681	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
118686	chr19	38020451	38020550	+	0	NA	intron (NM_015073, intron 1 of 21)	intron (NM_015073, intron 1 of 21)	113292	NM_015073	23094		NM_015073	ENSG00000105738	SIPA1L3	CTRCT45|SPAL3|SPAR3	signal induced proliferation associated 1 like 3	protein-coding
362	chr1	1022621	1023180	+	0	NA	intron (NM_198576, intron 2 of 35)	intron (NM_198576, intron 2 of 35)	2780	NM_198576	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
210885	chr7	101166821	101167250	+	0	NA	Intergenic	Intergenic	-1466	NM_003378	7425		NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
84808	chr16	31072001	31073800	+	0	NA	5' UTR (NM_001172668, exon 1 of 3)	5' UTR (NM_001172668, exon 1 of 3)	602	NM_001172668	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
69541	chr14	96505251	96505780	+	0	NA	intron (NM_001293628, intron 1 of 21)	L3|LINE|CR1	2650	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
186034	chr5	134008151	134008250	+	0	NA	Intergenic	Intergenic	-3225	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
200902	chr6	139112871	139114080	+	0	NA	Intergenic	Intergenic	-21605	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
207865	chr7	50367171	50367830	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	48452	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
88989	chr16	87938501	87938700	+	0	NA	Intergenic	Intergenic	-2071	NM_001739	763		NM_001739	ENSG00000174990	CA5A	CA5|CA5AD|CAV|CAVA|GS1-21A4.1	carbonic anhydrase 5A	protein-coding
156264	chr22	40414501	40414900	+	0	NA	intron (NM_001282661, intron 13 of 13)	L1MB4|LINE|L1	44106	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
122966	chr19	50785651	50785750	+	0	NA	TTS (NM_001384597)	TTS (NM_001384597)	460	NM_001384597	105372440		NM_001384597	ENSG00000261341	SMIM47	-	small integral membrane protein 47	protein-coding
49192	chr12	15580521	15580830	+	0	NA	intron (NM_030671, intron 9 of 13)	intron (NM_030671, intron 9 of 13)	34064	NM_030668	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
4438	chr1	21296471	21298180	+	0	NA	intron (NR_038404, intron 2 of 2)	intron (NR_038404, intron 2 of 2)	4035	NR_038404	100506801		NR_038404	ENSG00000231105	ECE1-AS1	-	ECE1 antisense RNA 1	ncRNA
106460	chr18	13813301	13813530	+	0	NA	Intergenic	Intergenic	-10734	NM_005913	4161		NM_005913	ENSG00000176136	MC5R	MC2	melanocortin 5 receptor	protein-coding
141941	chr20	1271021	1271280	+	0	NA	intron (NM_014723, intron 2 of 5)	MIR3|SINE|MIR	4856	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
149009	chr21	14530571	14530800	+	0	NA	intron (NM_001286523, intron 1 of 8)	MER117|DNA|hAT-Charlie	15630	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
165770	chr3	105766571	105766730	+	0	NA	intron (NR_135806, intron 4 of 20)	Tigger1|DNA|TcMar-Tigger	100941	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
27399	chr10	31340601	31341100	+	0	NA	intron (NM_001323675, intron 1 of 6)	L2b|LINE|L2	19190	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
186301	chr5	134569771	134570180	+	0	NA	intron (NM_001289985, intron 9 of 11)	intron (NM_001289985, intron 9 of 11)	43867	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
231442	chr9	131259401	131260030	+	0	NA	3' UTR (NM_033387, exon 2 of 2)	3' UTR (NM_033387, exon 2 of 2)	16795	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
89164	chr16	88538371	88538800	+	0	NA	Intergenic	Intergenic	-7532	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
161257	chr3	39256571	39257230	+	0	NA	Intergenic	AluYm1|SINE|Alu	23136	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
88238	chr16	82263571	82263800	+	0	NA	Intergenic	Intergenic	-93461	NM_005792	10200		NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
188772	chr5	157651451	157652530	+	0	NA	exon (NM_178424, exon 1 of 5)	exon (NM_178424, exon 1 of 5)	430	NM_007017	11063		NM_007017	ENSG00000039600	SOX30	-	SRY-box transcription factor 30	protein-coding
200652	chr6	137041721	137042430	+	0	NA	intron (NM_001278724, intron 1 of 5)	L2c|LINE|L2	2237	NM_001278722	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
172445	chr4	1949021	1949480	+	0	NA	TTS (NM_133334)	TTS (NM_133334)	-25386	NR_003004	677770		NR_003004	ENSG00000249784	SCARNA22	ACA11	small Cajal body-specific RNA 22	ncRNA
91436	chr17	4743201	4743900	+	0	NA	intron (NM_032265, intron 6 of 12)	intron (NM_032265, intron 6 of 12)	3535	NM_032265	84225		NM_032265	ENSG00000141497	ZMYND15	SPGF14	zinc finger MYND-type containing 15	protein-coding
84101	chr16	29637321	29637580	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-23733	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
195679	chr6	38337001	38337200	+	0	NA	intron (NM_152733, intron 6 of 9)	intron (NM_152733, intron 6 of 9)	-144496	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
151940	chr22	19114071	19114230	+	0	NA	intron (NM_001184781, intron 1 of 9)	intron (NM_001184781, intron 1 of 9)	8262	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
176058	chr4	82426721	82428130	+	0	NA	intron (NR_003249, intron 4 of 8)	intron (NR_003249, intron 4 of 8)	2800	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
26918	chr10	26468701	26469780	+	0	NA	intron (NM_019043, intron 2 of 14)	Tigger3|DNA|TcMar-Tigger	30899	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
219093	chr8	65864651	65864750	+	0	NA	Intergenic	HERVH48-int|LTR|ERV1	-22636	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
106791	chr18	23872571	23873180	+	0	NA	promoter-TSS (NM_001127718)	promoter-TSS (NM_001127718)	-145	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
130204	chr2	84527471	84527830	+	0	NA	intron (NM_001370, intron 3 of 76)	intron (NM_001370, intron 3 of 76)	11152	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
227228	chr9	89000921	89001200	+	0	NA	5' UTR (NM_005226, exon 2 of 2)	5' UTR (NM_005226, exon 2 of 2)	9592	NM_005226	1903		NM_005226	ENSG00000213694	S1PR3	C9orf108|C9orf47|EDG-3|EDG3|LPB3|S1P3|bA791O21.3	sphingosine-1-phosphate receptor 3	protein-coding
144296	chr20	34710901	34711830	+	0	NA	3' UTR (NM_021202, exon 5 of 5)	3' UTR (NM_021202, exon 5 of 5)	6646	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
39598	chr11	61300071	61300380	+	0	NA	intron (NM_001923, intron 26 of 26)	intron (NM_001923, intron 26 of 26)	-4909	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
111962	chr19	4829201	4829880	+	0	NA	intron (NM_001385680, intron 1 of 2)	MIRb|SINE|MIR	2172	NM_001385680	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
186807	chr5	139380701	139381100	+	0	NA	intron (NM_152685, intron 3 of 14)	intron (NM_152685, intron 3 of 14)	2397	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
231711	chr9	131736271	131736830	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	897	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
9229	chr1	45747601	45747830	+	0	NA	intron (NM_001145349, intron 1 of 9)	AluSz6|SINE|Alu	2938	NM_005897	3652		NM_005897	ENSG00000197429	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
125922	chr2	25041301	25044180	+	0	NA	intron (NM_001319099, intron 1 of 22)	CpG	277	NM_001319099	22979		NM_014971	ENSG00000084710	EFR3B	KIAA0953	EFR3 homolog B	protein-coding
156786	chr22	41904801	41905630	+	0	NA	intron (NR_103834, intron 21 of 21)	MIRb|SINE|MIR	4271	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
213048	chr7	131053921	131054430	+	0	NA	intron (NR_109852, intron 2 of 5)	L2a|LINE|L2	52855	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
48815	chr12	12072021	12072430	+	0	NA	intron (NM_138722, intron 1 of 5)	intron (NM_138722, intron 1 of 5)	757	NM_030766	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
93180	chr17	17801901	17802400	+	0	NA	intron (NM_030665, intron 3 of 5)	intron (NM_030665, intron 3 of 5)	11395	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
1668	chr1	3902281	3903330	+	0	NA	intron (NR_024455, intron 1 of 3)	intron (NR_024455, intron 1 of 3)	2401	NR_024455	100133612		NR_024455	ENSG00000236423	LINC01134	TLNC1	long intergenic non-protein coding RNA 1134	ncRNA
74643	chr15	60842401	60843080	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	161171	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
27197	chr10	28568571	28568930	+	0	NA	intron (NM_100486, intron 3 of 12)	AluSx1|SINE|Alu	35632	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
154484	chr22	35633751	35634200	+	0	NA	Intergenic	Intergenic	-10621	NM_001382809	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
148822	chr21	8381311	8381600	+	0	NA	intron (NR_038958, intron 1 of 6).2	AluJb|SINE|Alu	790	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
104280	chr17	80832451	80833630	+	0	NA	intron (NM_020761, intron 9 of 33)	intron (NM_020761, intron 9 of 33)	-27408	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
238781	chrX	154365121	154365550	+	0	NA	intron (NM_001110556, intron 10 of 47)	intron (NM_001110556, intron 10 of 47)	9299	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
99677	chr17	50737401	50737780	+	0	NA	intron (NM_001330330, intron 2 of 10)	MER20|DNA|hAT-Charlie	17987	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
232663	chr9	136493671	136494030	+	0	NA	TTS (NM_017617)	TTS (NM_017617)	-10091	NM_001276418	9919		NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding
83651	chr16	28313571	28314030	+	0	NA	intron (NM_001024401, intron 1 of 3)	L2|LINE|L2	21275	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
200535	chr6	136253701	136254350	+	0	NA	Intergenic	Intergenic	-3714	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
118263	chr19	35261271	35261430	+	0	NA	intron (NM_205835, intron 3 of 7)	intron (NM_205835, intron 3 of 7)	-7612	NM_001321150	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
58853	chr12	132955721	132957180	+	0	NA	promoter-TSS (NM_001164715)	promoter-TSS (NM_001164715)	-144	NM_001164715	100289635		NM_183238	ENSG00000196458	ZNF605	-	zinc finger protein 605	protein-coding
3411	chr1	15761901	15762100	+	0	NA	intron (NM_001024216, intron 1 of 6)	intron (NM_001024216, intron 1 of 6)	-2499	NM_001024215	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
43134	chr11	75273721	75274180	+	0	NA	intron (NM_020251, intron 11 of 14)	intron (NM_020251, intron 11 of 14)	33176	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
4904	chr1	23823521	23824300	+	0	NA	intron (NM_001166059, intron 1 of 6)	MIR|SINE|MIR	1519	NM_000191	3155		NM_000191	ENSG00000117305	HMGCL	HL|HMGCL1	3-hydroxy-3-methylglutaryl-CoA lyase	protein-coding
57084	chr12	121025551	121027000	+	0	NA	intron (NM_198213, intron 3 of 4)	intron (NM_198213, intron 3 of 4)	-9788	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
40802	chr11	64905671	64906950	+	0	NA	intron (NM_015104, intron 21 of 40)	intron (NM_015104, intron 21 of 40)	-3855	NR_106807	102466727		NR_106807	ENSG00000274314	MIR6749	hsa-mir-6749	microRNA 6749	ncRNA
166874	chr3	123719101	123719400	+	0	NA	intron (NM_053027, intron 13 of 32)	intron (NM_053027, intron 13 of 32)	29606	NR_046629	100873940		NR_046629	ENSG00000250174	MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
14225	chr1	143216251	143216450	+	0	NA	Intergenic	(ATCGAATGGA)n|Simple_repeat|Simple_repeat	206242	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
7526	chr1	34786271	34786750	+	0	NA	TTS (NM_001005752)	TTS (NM_001005752)	4242	NM_001005752	2707		NM_024009	ENSG00000188910	GJB3	CX31|DFNA2|DFNA2B|EKV|EKVP1	gap junction protein beta 3	protein-coding
21774	chr1	206924051	206924500	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-2334	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
211069	chr7	102473201	102473400	+	0	NA	TTS (NM_152892)	TTS (NM_152892)	1831	NR_039677	100616367		NR_039677	ENSG00000284596	MIR4467	-	microRNA 4467	ncRNA
170476	chr3	185939821	185940230	+	0	NA	Intergenic	L1MB8|LINE|L1	-2011	NM_004593	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
230834	chr9	129076501	129076900	+	0	NA	Intergenic	L1ME3A|LINE|L1	-4411	NM_020438	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
122612	chr19	49803221	49803480	+	0	NA	exon (NM_130787, exon 18 of 23)	exon (NM_130787, exon 18 of 23)	9942	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
165123	chr3	71710971	71711780	+	0	NA	intron (NM_173359, intron 2 of 7)	intron (NM_173359, intron 2 of 7)	14027	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
108611	chr18	75254821	75255360	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	44293	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
21615	chr1	206569901	206570830	+	0	NA	intron (NM_182665, intron 1 of 4)	AluSz|SINE|Alu	13201	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
225029	chr9	33147201	33147400	+	0	NA	intron (NM_001378495, intron 1 of 5)	AluSx1|SINE|Alu	-19648	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
99368	chr17	49911371	49911530	+	0	NA	Intergenic	Intergenic	-57740	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
190757	chr6	449851	450150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	58248	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
163883	chr3	52511971	52512130	+	0	NA	intron (NM_015136, intron 26 of 68)	intron (NM_015136, intron 26 of 68)	16712	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
153676	chr22	29065401	29066080	+	0	NA	Intergenic	Intergenic	-3821	NM_015370	25770		NM_015370	ENSG00000100249	C22orf31	HS747E2A|bK747E2.1	chromosome 22 open reading frame 31	protein-coding
16069	chr1	153355401	153355800	+	0	NA	Intergenic	Intergenic	-2254	NM_002965	6280		NM_002965	ENSG00000163220	S100A9	60B8AG|CAGB|CFAG|CGLB|L1AG|LIAG|MAC387|MIF|MRP14|NIF|P14|S100-A9	S100 calcium binding protein A9	protein-coding
56474	chr12	116141271	116141730	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	7154	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
19628	chr1	180153971	180155580	+	0	NA	promoter-TSS (NM_002826)	promoter-TSS (NM_002826)	-58	NM_001004128	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
104334	chr17	80966271	80967000	+	0	NA	TTS (NM_001163034)	TTS (NM_001163034)	4578	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
135772	chr2	169689701	169690180	+	0	NA	intron (NM_001085447, intron 1 of 8)	L1MB7|LINE|L1	4465	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
205568	chr7	21256321	21256630	+	0	NA	Intergenic	Intergenic	-171608	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
76767	chr15	76992521	76992850	+	0	NA	Intergenic	Intergenic	-1995	NM_001321137	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
101681	chr17	68381151	68381500	+	0	NA	intron (NM_001352901, intron 8 of 11)	intron (NM_001352901, intron 8 of 11)	-32298	NM_001278433	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
232764	chr9	136672921	136673180	+	0	NA	TTS (NM_201446)	TTS (NM_201446)	2448	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
214500	chr7	150449791	150451200	+	0	NA	promoter-TSS (NM_175571)	promoter-TSS (NM_175571)	-135	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
104001	chr17	80098171	80098530	+	0	NA	promoter-TSS (NR_039607)	promoter-TSS (NR_039607)	-478	NR_039607	100616121		NR_039607	ENSG00000265561	MIR1268B	-	microRNA 1268b	ncRNA
8051	chr1	38804121	38804400	+	0	NA	Intergenic	CpG	55512	NM_001271851	64121		NM_022157	ENSG00000116954	RRAGC	GTR2|LNGODS|LNGOS|RAGC|TIB929	Ras related GTP binding C	protein-coding
20112	chr1	192489851	192490030	+	0	NA	Intergenic	Intergenic	-85833	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
98533	chr17	47654021	47654880	+	0	NA	intron (NM_002265, intron 3 of 21)	intron (NM_002265, intron 3 of 21)	3385	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
225323	chr9	34611701	34614100	+	0	NA	promoter-TSS (NM_148179)	promoter-TSS (NM_148179)	-803	NM_148179	138716		NM_148178	ENSG00000164967	RPP25L	C9orf23|bA296L22.5	ribonuclease P/MRP subunit p25 like	protein-coding
130810	chr2	86988151	86988500	+	0	NA	intron (NM_001382344, intron 20 of 22)	AluSz|SINE|Alu	33519	NM_001032392	5343		NM_001032392	ENSG00000183281	PLGLB1	PLGL|PLGP1|PRGB|PRP-B	plasminogen like B1	protein-coding
211363	chr7	104993021	104993730	+	0	NA	Intergenic	AluJo|SINE|Alu	-2210	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
23007	chr1	226176221	226176500	+	0	NA	intron (NM_022735, intron 1 of 7)	AluSg|SINE|Alu	10381	NM_022735	64746		NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
203202	chr6	167735101	167735450	+	0	NA	Intergenic	CpG	-51488	NR_117092	441178		NM_001025489	ENSG00000203688	LINC02487	-	long intergenic non-protein coding RNA 2487	ncRNA
199432	chr6	117346151	117346450	+	0	NA	intron (NM_001378902, intron 27 of 43)	intron (NM_001378902, intron 27 of 43)	79642	NM_001378902	6098		NM_002944	ENSG00000047936	ROS1	MCF3|ROS|c-ros-1	ROS proto-oncogene 1, receptor tyrosine kinase	protein-coding
80743	chr16	3145071	3145430	+	0	NA	intron (NR_132322, intron 3 of 9)	intron (NR_132322, intron 3 of 9)	959	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
195646	chr6	37867771	37867960	+	0	NA	intron (NM_021943, intron 1 of 5)	MIRc|SINE|MIR	48138	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
27029	chr10	26856651	26856850	+	0	NA	intron (NM_001178116, intron 1 of 11)	intron (NM_001178116, intron 1 of 11)	4208	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
225247	chr9	34253851	34253950	+	0	NA	3' UTR (NM_194313, exon 13 of 13)	3' UTR (NM_194313, exon 13 of 13)	74857	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
133654	chr2	127053101	127053530	+	0	NA	intron (NM_139345, intron 11 of 15)	intron (NM_139345, intron 11 of 15)	28750	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
145016	chr20	37902021	37902380	+	0	NA	promoter-TSS (NM_080607)	promoter-TSS (NM_080607)	-927	NM_080607	128434		NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
16603	chr1	155063301	155066130	+	0	NA	promoter-TSS (NR_040773)	promoter-TSS (NR_040773)	-724	NR_040773	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
41264	chr11	65839051	65839550	+	0	NA	intron (NM_152760, intron 1 of 12)	AluYa5|SINE|Alu	5337	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
191423	chr6	10416851	10417450	+	0	NA	TTS (NR_033910)	TTS (NR_033910)	-2076	NM_001372066	7020		NM_003220	ENSG00000137203	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha	protein-coding
205596	chr7	21767451	21767630	+	0	NA	intron (NM_001277115, intron 55 of 81)	intron (NM_001277115, intron 55 of 81)	178359	NM_018719	55536		NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
81292	chr16	4679551	4680600	+	0	NA	exon (NM_015246, exon 12 of 17)	exon (NM_015246, exon 12 of 17)	8757	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
124856	chr2	8050171	8050480	+	0	NA	intron (NR_034135, intron 8 of 8)	L1MD3|LINE|L1	-73511	NR_015405	339788		NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
35710	chr11	1937271	1937430	+	0	NA	intron (NM_001363561, intron 16 of 16)	intron (NM_001363561, intron 16 of 16)	-9982	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
133904	chr2	130180471	130180630	+	0	NA	intron (NM_017951, intron 1 of 19)	AluSg7|SINE|Alu	1052	NR_033231	55627		NM_017751	ENSG00000136699	SMPD4	NEDMABA|NEDMEBA|NET13|NSMASE-3|NSMASE3|SKNY	sphingomyelin phosphodiesterase 4	protein-coding
204310	chr7	2697371	2697530	+	0	NA	intron (NM_001321766, intron 1 of 6)	AluJb|SINE|Alu	9248	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
226558	chr9	72364001	72364700	+	0	NA	intron (NM_001102420, intron 1 of 6)	CpG	206	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
133753	chr2	127528271	127528800	+	0	NA	Intergenic	Intergenic	-2046	NM_017969	55677		NM_017969	ENSG00000163166	IWS1	-	interacts with SUPT6H, CTD assembly factor 1	protein-coding
61144	chr13	48656351	48656980	+	0	NA	intron (NM_001308471, intron 1 of 1)	intron (NM_001308471, intron 1 of 1)	2736	NM_001308476	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
90116	chr16	90109121	90109550	+	0	NA	intron (NR_126161, intron 2 of 3)	MER57C2|LTR|ERV1	7071	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
174441	chr4	39700871	39701100	+	0	NA	intron (NM_001111113, intron 1 of 4)	intron (NM_001111113, intron 1 of 4)	2849	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
30429	chr10	79046301	79046700	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	20948	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
14672	chr1	145818071	145819150	+	0	NA	intron (NM_014455, intron 1 of 8)	L1P4|LINE|L1	5485	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
55873	chr12	109518801	109519080	+	0	NA	intron (NM_183415, intron 19 of 27)	intron (NM_183415, intron 19 of 27)	41306	NM_130466	89910		NM_130466	ENSG00000151148	UBE3B	BPIDS|KOS	ubiquitin protein ligase E3B	protein-coding
113582	chr19	10273171	10273800	+	0	NA	intron (NM_000201, intron 1 of 6)	AluSp|SINE|Alu	2365	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
70219	chr14	100638371	100639500	+	0	NA	Intergenic	Intergenic	-18333	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
85738	chr16	56677471	56677630	+	0	NA	intron (NR_104045, intron 2 of 2)	intron (NR_104045, intron 2 of 2)	1434	NR_003669	644314		NM_175621		MT1IP	MT1|MT1I|MTE	metallothionein 1I, pseudogene	pseudo
134233	chr2	134926471	134926630	+	0	NA	intron (NR_135468, intron 2 of 9)	HAL1M8|LINE|L1	7728	NM_001320749	905		NM_001241	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
28105	chr10	43394171	43394330	+	0	NA	intron (NM_001098204, intron 3 of 3)	intron (NM_001098204, intron 3 of 3)	2581	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
146488	chr20	49845171	49845600	+	0	NA	intron (NR_048540, intron 5 of 11)	intron (NR_048540, intron 5 of 11)	-18474	NR_162136	113219455		NR_162136		MIR12122	-	microRNA 12122	ncRNA
131185	chr2	94858521	94858780	+	0	NA	Intergenic	Intergenic	-1575	NR_003366	729171		NR_003366	ENSG00000229089	ANKRD20A8P	ANKRD20B	ankyrin repeat domain 20 family member A8, pseudogene	pseudo
66450	chr14	61543671	61543830	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	26444	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
193161	chr6	29654771	29655380	+	0	NA	Intergenic	Intergenic	-2017	NM_206814	4340		NM_002433	ENSG00000204655	MOG	BTN6|BTNL11|MOGIG2|NRCLP7	myelin oligodendrocyte glycoprotein	protein-coding
85569	chr16	53457521	53458700	+	0	NA	intron (NM_001323609, intron 8 of 20)	intron (NM_001323609, intron 8 of 20)	22491	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
62056	chr13	91375171	91375530	+	0	NA	Intergenic	Intergenic	-23271	NM_004466	2262		NM_004466	ENSG00000179399	GPC5	-	glypican 5	protein-coding
81561	chr16	9124801	9125180	+	0	NA	Intergenic	Intergenic	33346	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
195990	chr6	41987351	41988350	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-46002	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
138115	chr2	202284621	202285580	+	0	NA	intron (NM_015934, intron 5 of 14)	AluSz|SINE|Alu	-6217	NR_003694	100113392		NR_003694	ENSG00000271852	SNORD11B	-	small nucleolar RNA, C/D box 11B	snoRNA
146615	chr20	50155421	50155880	+	0	NA	Intergenic	Intergenic	-1852	NR_027889	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
28498	chr10	50070171	50070530	+	0	NA	intron (NM_001291398, intron 3 of 29)	intron (NM_001291398, intron 3 of 29)	2396	NM_001005751	387680		NM_018232	ENSG00000099290	WASHC2A	FAM21A|FAM21B|bA56A21.1|bA98I6.1	WASH complex subunit 2A	protein-coding
87845	chr16	75655871	75656430	+	0	NA	intron (NM_018975, intron 2 of 2)	intron (NM_018975, intron 2 of 2)	8377	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
99924	chr17	57045621	57046730	+	0	NA	non-coding (NR_002818, exon 1 of 1)	non-coding (NR_002818, exon 1 of 1)	697	NR_002818	376412		NR_002818	ENSG00000293179	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
132537	chr2	106165101	106165680	+	0	NA	intron (NR_165308, intron 2 of 14)	intron (NR_165308, intron 2 of 14)	-4753	NM_001377509	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
192458	chr6	24912921	24913980	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-2402	NM_014722	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
202539	chr6	158632651	158632950	+	0	NA	non-coding (NR_164859, exon 17 of 17)	non-coding (NR_164859, exon 17 of 17)	11943	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
177987	chr4	139177701	139179050	+	0	NA	Intergenic	CpG-21506	-1157	NM_001371336	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
29631	chr10	71811701	71812750	+	0	NA	5' UTR (NM_001171936, exon 1 of 4)	5' UTR (NM_001171936, exon 1 of 4)	342	NM_001171935	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
125044	chr2	9607621	9608930	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	22722	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
186586	chr5	138502451	138503050	+	0	NA	Intergenic	AluY|SINE|Alu	37271	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
196045	chr6	42049721	42051500	+	0	NA	promoter-TSS (NM_138572)	promoter-TSS (NM_138572)	86	NM_138572	129685		NM_138572	ENSG00000137413	TAF8	II|NEDMLHB|TAF|TAF(II)43|TAFII-43|TAFII43|TBN	TATA-box binding protein associated factor 8	protein-coding
90323	chr17	1120451	1121880	+	0	NA	intron (NM_001322840, intron 2 of 22).2	intron (NM_001322840, intron 2 of 22).2	5407	NM_001322840	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
152271	chr22	20283371	20283680	+	0	NA	Intergenic	Intergenic	-15207	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
76949	chr15	78103521	78104350	+	0	NA	TTS (NM_001271888)	TTS (NM_001271888)	11350	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
183672	chr5	80599751	80599850	+	0	NA	Intergenic	AluSx|SINE|Alu	22724	NR_125754	103689917		NR_125754	ENSG00000251221	LINC01337	TCONS_00009713	long intergenic non-protein coding RNA 1337	ncRNA
144029	chr20	33493601	33494100	+	0	NA	intron (NM_001032999, intron 1 of 10)	Charlie7a|DNA|hAT-Charlie	3754	NM_001032999	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
6456	chr1	28257771	28258080	+	0	NA	Intergenic	FRAM|SINE|Alu	-1593	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
77578	chr15	85010451	85010950	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	28726	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
155554	chr22	38721371	38722030	+	0	NA	intron (NM_004286, intron 4 of 11)	intron (NM_004286, intron 4 of 11)	15756	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
25315	chr10	6219171	6219530	+	0	NA	intron (NM_001145443, intron 6 of 14)	intron (NM_001145443, intron 6 of 14)	16418	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
227363	chr9	89485271	89486200	+	0	NA	intron (NM_001371194, intron 1 of 15)	AluSp|SINE|Alu	-5845	NR_163884	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
188549	chr5	156920421	156921180	+	0	NA	intron (NM_001146726, intron 6 of 7)	intron (NM_001146726, intron 6 of 7)	42426	NM_001146726	91937		NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T cell immunoglobulin and mucin domain containing 4	protein-coding
96021	chr17	39239521	39240480	+	0	NA	intron (NR_164152, intron 3 of 9)	intron (NR_164152, intron 3 of 9)	2230	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
90475	chr17	1391751	1391850	+	0	NA	intron (NR_024058, intron 1 of 6)	FLAM_C|SINE|Alu	8422	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
116676	chr19	18406621	18406880	+	0	NA	Intergenic	Intergenic	-9128	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
205792	chr7	23712471	23712700	+	0	NA	intron (NM_031414, intron 3 of 23)	intron (NM_031414, intron 3 of 23)	2366	NM_031414	56164		NM_031414	ENSG00000196335	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
216170	chr8	11765351	11766330	+	0	NA	Intergenic	MIRb|SINE|MIR	-3870	NM_145043	252969		NM_145043	ENSG00000154328	NEIL2	NEH2|NEI2	nei like DNA glycosylase 2	protein-coding
191231	chr6	5823601	5823800	+	0	NA	Intergenic	Intergenic	-128428	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
10663	chr1	70528851	70528950	+	0	NA	Intergenic	Intergenic	117632	NM_001902	1491		NM_001902	ENSG00000116761	CTH	CGL|CSE	cystathionine gamma-lyase	protein-coding
142270	chr20	3177971	3178330	+	0	NA	Intergenic	LTR53|LTR|ERVL	-4601	NM_001367609	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
169508	chr3	169970651	169971280	+	0	NA	intron (NM_003262, intron 1 of 7)	intron (NM_003262, intron 1 of 7)	4158	NM_003262	7095		NM_003262	ENSG00000008952	SEC62	Dtrp1|HTP1|TLOC1|TP-1	SEC62 homolog, preprotein translocation factor	protein-coding
197881	chr6	89147601	89147800	+	0	NA	intron (NM_001010853, intron 1 of 6)	AluSz|SINE|Alu	1645	NM_001010853	135293		NM_001010853	ENSG00000146281	PM20D2	ACY1L2	peptidase M20 domain containing 2	protein-coding
78922	chr15	101238871	101239030	+	0	NA	intron (NM_014918, intron 1 of 2)	intron (NM_014918, intron 1 of 2)	13098	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
164739	chr3	69020371	69020930	+	0	NA	3' UTR (NM_007114, exon 17 of 17)	3' UTR (NM_007114, exon 17 of 17)	-6966	NM_001278689	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
115075	chr19	14204771	14205900	+	0	NA	intron (NM_001008701, intron 1 of 23)	CpG	834	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
172769	chr4	2924971	2925530	+	0	NA	intron (NM_176801, intron 13 of 15)	intron (NM_176801, intron 13 of 15)	8987	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
114473	chr19	12740051	12740350	+	0	NA	intron (NM_001371488, intron 3 of 7)	AluY|SINE|Alu	2703	NM_004317	439		NM_004317	ENSG00000198356	GET3	ARSA-I|ARSA1|ASNA-I|ASNA1|CMD2H|TRC40	guided entry of tail-anchored proteins factor 3, ATPase	protein-coding
78893	chr15	101006951	101007350	+	0	NA	intron (NM_024652, intron 6 of 33)	intron (NM_024652, intron 6 of 33)	87793	NM_024652	79705		NM_024652	ENSG00000154237	LRRK1	OSMD|RIPK6|Roco1	leucine rich repeat kinase 1	protein-coding
812	chr1	1559251	1559350	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	15563	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
28733	chr10	61943061	61944250	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	41956	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
122809	chr19	50379601	50380080	+	0	NA	exon (NM_007121, exon 8 of 10)	exon (NM_007121, exon 8 of 10)	3383	NM_007121	7376		NM_007121	ENSG00000131408	NR1H2	LXR-b|LXRB|NER|NER-I|RIP15|UNR	nuclear receptor subfamily 1 group H member 2	protein-coding
162367	chr3	47849621	47850680	+	0	NA	TTS (NM_138615)	TTS (NM_138615)	595	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
62744	chr13	106563771	106564600	+	0	NA	intron (NM_018011, intron 1 of 3)	intron (NM_018011, intron 1 of 3)	3952	NM_018011	55082		NM_018011	ENSG00000134884	ARGLU1	-	arginine and glutamate rich 1	protein-coding
113786	chr19	10552701	10553400	+	0	NA	TTS (NM_023008)	TTS (NM_023008)	928	NR_031603	100302226		NR_031603	ENSG00000221410	MIR1238	MIRN1238|hsa-mir-1238	microRNA 1238	ncRNA
134421	chr2	143110621	143111150	+	0	NA	Intergenic	Intergenic	-18534	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
163259	chr3	50291771	50293350	+	0	NA	promoter-TSS (NM_006764)	promoter-TSS (NM_006764)	-131	NM_006764	7866		NM_006764	ENSG00000214706	IFRD2	IFNRP|SKMc15|SM15	interferon related developmental regulator 2	protein-coding
174337	chr4	38684301	38685100	+	0	NA	intron (NM_016531, intron 2 of 5)	AluJo|SINE|Alu	-20072	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
92018	chr17	7468701	7468900	+	0	NA	intron (NM_020899, intron 1 of 3)	intron (NM_020899, intron 1 of 3)	10831	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
84607	chr16	30674721	30675180	+	0	NA	Intergenic	AluY|SINE|Alu	16519	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
60851	chr13	45490021	45490470	+	0	NA	intron (NM_031431, intron 8 of 22)	L1ME4a|LINE|L1	25306	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
103442	chr17	78268121	78268580	+	0	NA	intron (NR_073178, intron 4 of 6)	intron (NR_073178, intron 4 of 6)	10142	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
43840	chr11	87081251	87081780	+	0	NA	intron (NR_033149, intron 3 of 13)	intron (NR_033149, intron 3 of 13)	43581	NM_001168724	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
170839	chr3	190424301	190424830	+	0	NA	Intergenic	Intergenic	25311	NM_207316	131920		NM_207316	ENSG00000198398	TMEM207	UNQ846	transmembrane protein 207	protein-coding
137312	chr2	195672701	195672900	+	0	NA	intron (NM_020342, intron 1 of 9)	intron (NM_020342, intron 1 of 9)	15574	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
83359	chr16	25064151	25064450	+	0	NA	Intergenic	MER90a|LTR|ERV1	-2587	NR_135196	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
82839	chr16	21504751	21505700	+	0	NA	TTS (NR_049833)	TTS (NR_049833)	910	NR_037451	100500917		NR_037451	ENSG00000265462	MIR3680-1	MIR3680|hsa-mir-3680-1	microRNA 3680-1	ncRNA
60158	chr13	40077621	40077880	+	0	NA	Intergenic	Intergenic	-104059	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
125407	chr2	11701901	11702250	+	0	NA	intron (NM_001349207, intron 1 of 20)	MER74A|LTR|ERVL	-22240	NM_001261427	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
223935	chr9	757651	757750	+	0	NA	Intergenic	Intergenic	51023	NM_001354342	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
85493	chr16	50746151	50746480	+	0	NA	intron (NM_001378745, intron 3 of 18)	AluJb|SINE|Alu	3900	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
194630	chr6	33576101	33576300	+	0	NA	intron (NM_001188, intron 2 of 5)	AluSp|SINE|Alu	4076	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
171106	chr3	195506521	195507280	+	0	NA	Intergenic	Intergenic	36425	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
21930	chr1	207857451	207857750	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-34897	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
186782	chr5	139348071	139348900	+	0	NA	intron (NM_001033112, intron 1 of 3)	AluY|SINE|Alu	6051	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
14909	chr1	147174351	147174450	+	0	NA	intron (NM_001348451, intron 1 of 23)	intron (NM_001348451, intron 1 of 23)	1653	NM_001348451	9557		NM_004284	ENSG00000131778	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1 like	protein-coding
185903	chr5	132778351	132778650	+	0	NA	promoter-TSS (NM_001098813)	promoter-TSS (NM_001098813)	-631	NM_001098813	23176		NM_015146	ENSG00000164402	SEPTIN8	SEP2|SEPT8|Septin-8	septin 8	protein-coding
18888	chr1	168227211	168228030	+	0	NA	intron (NM_199344, intron 1 of 7)	intron (NM_199344, intron 1 of 7)	1616	NM_199344	375035		NM_199344	ENSG00000213064	SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
161200	chr3	39149061	39149550	+	0	NA	intron (NM_001320560, intron 1 of 4)	L1ME3|LINE|L1	-1875	NM_001320559	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
188988	chr5	166145151	166145330	+	0	NA	Intergenic	L1HS|LINE|L1	781130	NR_108020	102557615		NR_108020	ENSG00000254130	LINC01947	CTB-7E3.1	long intergenic non-protein coding RNA 1947	ncRNA
66617	chr14	63724521	63725400	+	0	NA	intron (NM_030791, intron 1 of 2)	FLAM_C|SINE|Alu	3105	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
222167	chr8	132833721	132833980	+	0	NA	intron (NR_156424, intron 14 of 18)	intron (NR_156424, intron 14 of 18)	-33108	NM_003235	7038		NM_003235	ENSG00000042832	TG	AITD3|TGN	thyroglobulin	protein-coding
170765	chr3	188541071	188541230	+	0	NA	intron (NR_164692, intron 5 of 9)	intron (NR_164692, intron 5 of 9)	27516	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
156582	chr22	41524601	41525580	+	0	NA	TTS (NM_001018050)	TTS (NM_001018050)	19380	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
120805	chr19	45466201	45466480	+	0	NA	Intergenic	Intergenic	-1656	NM_001114171	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
127962	chr2	46643851	46644380	+	0	NA	Intergenic	Intergenic	26900	NM_014171	9419		NM_014171	ENSG00000119878	CRIPT	HSPC139|RTS3|SSMDF	CXXC repeat containing interactor of PDZ3 domain	protein-coding
61830	chr13	75839551	75839650	+	0	NA	intron (NM_001330583, intron 18 of 28)	intron (NM_001330583, intron 18 of 28)	-31438	NR_164111	729420		NM_001257995	ENSG00000178734	LMO7DN	C13orf45	LMO7 downstream neighbor	ncRNA
231832	chr9	132587221	132587980	+	0	NA	intron (NM_020064, intron 2 of 2)	intron (NM_020064, intron 2 of 2)	4994	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
91574	chr17	5193251	5193780	+	0	NA	intron (NR_152840, intron 1 of 5)	intron (NR_152840, intron 1 of 5)	1508	NR_152840	100130950		NR_034082	ENSG00000261879	ZNF594-DT	-	ZNF594 divergent transcript	ncRNA
181918	chr5	54760551	54760850	+	0	NA	Intergenic	Intergenic	-16442	NR_104658	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
172835	chr4	3195601	3196080	+	0	NA	intron (NM_002111, intron 40 of 66)	intron (NM_002111, intron 40 of 66)	-48529	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
60396	chr13	40956771	40956930	+	0	NA	intron (NM_001370329, intron 4 of 9)	AluSq|SINE|Alu	25432	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
185653	chr5	131549751	131550180	+	0	NA	intron (NM_016340, intron 5 of 27)	MER44A|DNA|TcMar-Tigger	85264	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
151647	chr22	16693951	16694050	+	0	NA	Intergenic	Intergenic	-18460	NR_040115	23783		NR_040115		ANKRD62P1-PARP4P3	VWFP1-ANKRD62P1-PARP4P3	ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene	pseudo
18181	chr1	160821371	160821930	+	0	NA	intron (NM_001261456, intron 7 of 9)	intron (NM_001261456, intron 7 of 9)	25476	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
47132	chr12	727171	727330	+	0	NA	Intergenic	LTR16|LTR|ERVL	-25329	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
164865	chr3	71070671	71071650	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-6236	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
219871	chr8	85200171	85200800	+	0	NA	intron (NM_001083589, intron 1 of 7)	intron (NM_001083589, intron 1 of 7)	12820	NM_001083589	1875		NM_001951	ENSG00000133740	E2F5	E2F-5	E2F transcription factor 5	protein-coding
143695	chr20	32175871	32176030	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	14410	NR_002781	128854		NM_178465	ENSG00000235217	TSPY26P	TSPYL3|bA392M18.1	testis specific protein Y-linked 26, pseudogene	pseudo
20951	chr1	202294201	202294400	+	0	NA	intron (NM_021636, intron 6 of 17)	L2a|LINE|L2	47636	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
29339	chr10	69423971	69424650	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-7392	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
110964	chr19	2947521	2947780	+	0	NA	Intergenic	AluSq|SINE|Alu	-2679	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
167163	chr3	128069271	128069730	+	0	NA	exon (NM_013336, exon 12 of 12)	exon (NM_013336, exon 12 of 12)	-6310	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
86894	chr16	68005521	68006600	+	0	NA	Intergenic	Intergenic	-5441	NR_136706	64174		NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
227069	chr9	84296201	84296700	+	0	NA	intron (NM_001199633, intron 8 of 17)	intron (NM_001199633, intron 8 of 17)	44308	NR_037638	64078		NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
107984	chr18	58650021	58650600	+	0	NA	Intergenic	Intergenic	-21155	NM_173844	10892		NM_006785	ENSG00000172175	MALT1	IMD12|MLT|MLT1|PCASP1	MALT1 paracaspase	protein-coding
10009	chr1	55202951	55203630	+	0	NA	intron (NM_015306, intron 1 of 67)	intron (NM_015306, intron 1 of 67)	12074	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
224016	chr9	2837871	2838350	+	0	NA	intron (NM_014878, intron 2 of 17)	intron (NM_014878, intron 2 of 17)	5985	NM_014878	9933		NM_014878	ENSG00000080608	PUM3	HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5	pumilio RNA binding family member 3	protein-coding
228956	chr9	113411201	113411950	+	0	NA	promoter-TSS (NM_001278255)	promoter-TSS (NM_001278255)	-826	NM_001278255	54107		NM_017443	ENSG00000148229	POLE3	CHARAC17|CHRAC17|CHRAC2|YBL1|p17	DNA polymerase epsilon 3, accessory subunit	protein-coding
144247	chr20	34513921	34514400	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1442	NR_168136	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
144323	chr20	34891221	34891480	+	0	NA	intron (NM_001076552, intron 2 of 18)	MIR3|SINE|MIR	14738	NM_018677	55902		NM_018677	ENSG00000131069	ACSS2	ACAS2|ACECS|ACS|ACSA|AceCS1|dJ1161H23.1	acyl-CoA synthetase short chain family member 2	protein-coding
70707	chr14	103329151	103329450	+	0	NA	Intergenic	Intergenic	-4937	NM_001969	1983		NM_001969	ENSG00000100664	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
175738	chr4	77710801	77711200	+	0	NA	Intergenic	LTR16A|LTR|ERVL	105180	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
173002	chr4	4332671	4332830	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	42499	NM_001330625	166793		NM_145291	ENSG00000168826	ZBTB49	ZNF509	zinc finger and BTB domain containing 49	protein-coding
161081	chr3	38120301	38120500	+	0	NA	intron (NM_001321153, intron 33 of 36)	intron (NM_001321153, intron 33 of 36)	16727	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
164601	chr3	66253671	66254300	+	0	NA	intron (NM_173471, intron 4 of 10)	intron (NM_173471, intron 4 of 10)	32982	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
53082	chr12	57734671	57734830	+	0	NA	intron (NM_014770, intron 2 of 17)	intron (NM_014770, intron 2 of 17)	3496	NM_001122772	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
22174	chr1	212283371	212284100	+	0	NA	intron (NR_125984, intron 1 of 3)	intron (NR_125984, intron 1 of 3)	1286	NR_125984	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
128100	chr2	47964771	47965130	+	0	NA	Intergenic	Intergenic	-58452	NM_001190274	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
120661	chr19	45087351	45088580	+	0	NA	intron (NR_134887, intron 1 of 1)	AluSx1|SINE|Alu	2426	NR_134887	105372419		NR_134887	ENSG00000267348	GEMIN7-AS1	-	GEMIN7 antisense RNA 1	ncRNA
142543	chr20	5114401	5114930	+	0	NA	TTS (NM_002592)	TTS (NM_002592)	-1578	NM_001330986	29058		NM_014145	ENSG00000089063	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
59269	chr13	24188601	24188800	+	0	NA	intron (NM_153023, intron 1 of 11)	Tigger1|DNA|TcMar-Tigger	26284	NR_031753	100313842		NR_031753	ENSG00000252695	MIR2276	-	microRNA 2276	ncRNA
198207	chr6	97284351	97284750	+	0	NA	Intergenic	L1M5|LINE|L1	-1334	NM_001350599	253714		NM_198468	ENSG00000146263	MMS22L	C6orf167|dJ39B17.2	MMS22 like, DNA repair protein	protein-coding
237913	chrX	131841301	131841700	+	0	NA	Intergenic	Intergenic	-10857	NR_026975	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
228606	chr9	105159671	105159930	+	0	NA	Intergenic	AluSc5|SINE|Alu	-84805	NM_001330731	23446		NM_022109	ENSG00000070214	SLC44A1	CD92|CDW92|CHTL1|CONATOC|CTL1	solute carrier family 44 member 1	protein-coding
135576	chr2	165877651	165878180	+	0	NA	intron (NM_024753, intron 27 of 28)	L3|LINE|CR1	-5974	NR_045375	100506124		NR_045375		LOC100506124	-	uncharacterized LOC100506124	ncRNA
46862	chr11	133933601	133933800	+	0	NA	intron (NM_001277285, intron 7 of 19)	AluJr|SINE|Alu	23268	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
237282	chrX	111687251	111687550	+	0	NA	intron (NR_136735, intron 4 of 4)	intron (NR_136735, intron 4 of 4)	5743	NM_001257239	79868		NM_018466	ENSG00000101901	ALG13	CDG1S|CXorf45|DEE36|EIEE36|GLT28D1|MDS031|TDRD13|YGL047W	ALG13 UDP-N-acetylglucosaminyltransferase subunit	protein-coding
207528	chr7	44812201	44813480	+	0	NA	Intergenic	AluSx1|SINE|Alu	16159	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
158749	chr3	9353121	9353600	+	0	NA	Intergenic	Intergenic	-9694	NM_015453	25917		NM_015453	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
168011	chr3	136861301	136863180	+	0	NA	promoter-TSS (NM_006153)	promoter-TSS (NM_006153)	32	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
185754	chr5	132225151	132225750	+	0	NA	intron (NM_001017974, intron 1 of 14)	intron (NM_001017974, intron 1 of 14)	1641	NM_004199	8974		NM_004199	ENSG00000072682	P4HA2	MYP25|lncRNA-PE	prolyl 4-hydroxylase subunit alpha 2	protein-coding
24051	chr1	235297401	235298150	+	0	NA	intron (NM_016374, intron 2 of 23)	L1MC5a|LINE|L1	-29441	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
164951	chr3	71251371	71251730	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-6473	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
230050	chr9	127402371	127402850	+	0	NA	exon (NM_001271711, exon 5 of 9)	exon (NM_001271711, exon 5 of 9)	5441	NM_014580	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
66952	chr14	65846351	65848380	+	0	NA	Intergenic	Intergenic	376263	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
94822	chr17	31323321	31323780	+	0	NA	intron (NM_001042492, intron 36 of 57)	intron (NM_001042492, intron 36 of 57)	-1928	NM_001003927	2123		NM_014210	ENSG00000126860	EVI2A	EVDA|EVI-2A|EVI2	ecotropic viral integration site 2A	protein-coding
127616	chr2	43046501	43047300	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-7357	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
13588	chr1	116324471	116324830	+	0	NA	Intergenic	Intergenic	-48594	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
57043	chr12	120821321	120821800	+	0	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	82798	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
201904	chr6	151334751	151335230	+	0	NA	intron (NM_144497, intron 1 of 2)	intron (NM_144497, intron 1 of 2)	-6716	NM_001370346	9590		NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
192183	chr6	17676671	17677180	+	0	NA	intron (NM_001278209, intron 2 of 22)	intron (NM_001278209, intron 2 of 22)	-29205	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
135988	chr2	172192851	172192950	+	0	NA	Intergenic	L1PA3|LINE|L1	89894	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
6110	chr1	27335951	27336280	+	0	NA	non-coding (NR_037580, exon 8 of 8)	non-coding (NR_037580, exon 8 of 8)	-5907	NM_032872	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
36561	chr11	6642921	6643180	+	0	NA	intron (NM_003737, intron 1 of 20)	L2c|LINE|L2	12759	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
227110	chr9	85806771	85806930	+	0	NA	intron (NR_029410, intron 1 of 8)	intron (NR_029410, intron 1 of 8)	848	NR_029410	389765		NR_029410		LOC389765	-	kinesin family member 27 pseudogene	pseudo
190700	chr6	214451	214750	+	0	NA	Intergenic	Intergenic	-9116	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
94993	chr17	32354701	32354900	+	0	NA	intron (NM_001098507, intron 2 of 11)	AluSg4|SINE|Alu	4643	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
87510	chr16	71851451	71851750	+	0	NA	exon (NM_001137675, exon 3 of 3)	exon (NM_001137675, exon 3 of 3)	5624	NM_001137675	342371		NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1 like	protein-coding
124669	chr2	3239271	3239630	+	0	NA	intron (NM_001330531, intron 3 of 7)	intron (NM_001330531, intron 3 of 7)	-113424	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
138903	chr2	218033371	218034080	+	0	NA	Intergenic	Intergenic	-1209	NR_034176	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
214557	chr7	150563651	150564630	+	0	NA	Intergenic	HERVK14C-int|LTR|ERVK	-3230	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
56536	chr12	116817351	116817700	+	0	NA	intron (NM_001382266, intron 7 of 10)	intron (NM_001382266, intron 7 of 10)	63916	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
160959	chr3	36976251	36976350	+	0	NA	Intergenic	Intergenic	16831	NM_014805	9852		NM_014805	ENSG00000178567	EPM2AIP1	-	EPM2A interacting protein 1	protein-coding
230444	chr9	128165121	128165650	+	0	NA	TTS (NM_001131018)	TTS (NM_001131018)	5120	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
201654	chr6	149484301	149486100	+	0	NA	promoter-TSS (NM_207360)	promoter-TSS (NM_207360)	-186	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
20248	chr1	193457671	193458030	+	0	NA	Intergenic	Intergenic	153105	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
85075	chr16	32675281	32676200	+	0	NA	exon (NM_016212, exon 1 of 2)	exon (NM_016212, exon 1 of 2)	369	NM_001330066	102724127		NM_001330066	ENSG00000278848	TP53TG3F	TP53TG3|TP53TG3B|TP53TG3C|TP53TG3D|TP53TG3E	TP53 target 3 family member F	protein-coding
41497	chr11	66248571	66248730	+	0	NA	Intergenic	L1MC3|LINE|L1	-8644	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
154275	chr22	31634821	31635950	+	0	NA	intron (NM_001326416, intron 3 of 10)	AluSx1|SINE|Alu	3138	NM_178022	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
4191	chr1	19437521	19437780	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	46645	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
124580	chr2	678801	679000	+	0	NA	Intergenic	Intergenic	-1494	NM_152834	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
138653	chr2	212776971	212777230	+	0	NA	Intergenic	Intergenic	-18231	NR_131942	102725079		NR_131941	ENSG00000234308	LINC01878	-	long intergenic non-protein coding RNA 1878	ncRNA
146153	chr20	48716911	48717490	+	0	NA	intron (NM_020820, intron 5 of 39)	intron (NM_020820, intron 5 of 39)	110799	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
202728	chr6	158917471	158918380	+	0	NA	Intergenic	Intergenic	29448	NR_160979	100130967		NM_001195032	ENSG00000203711	LINC02901	C6orf99	long intergenic non-protein coding RNA 2901	ncRNA
491	chr1	1173401	1174350	+	0	NA	promoter-TSS (NM_001130045)	promoter-TSS (NM_001130045)	-5	NM_001130045	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
131202	chr2	95041821	95042280	+	0	NA	intron (NM_022440, intron 1 of 1)	intron (NM_022440, intron 1 of 1)	16342	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
187271	chr5	141524621	141525380	+	0	NA	intron (NM_005219, intron 26 of 27)	intron (NM_005219, intron 26 of 27)	-33311	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
235524	chrX	47220651	47221230	+	0	NA	intron (NM_006201, intron 1 of 15)	intron (NM_006201, intron 1 of 15)	-2078	NM_001170460	5127		NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
160609	chr3	31399171	31399580	+	0	NA	Intergenic	Intergenic	-133550	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
52240	chr12	54403151	54403680	+	0	NA	intron (NM_002205, intron 17 of 29)	intron (NM_002205, intron 17 of 29)	-12117	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
13312	chr1	113416451	113416750	+	0	NA	intron (NM_152900, intron 1 of 20)	intron (NM_152900, intron 1 of 20)	26085	NM_152900	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
220235	chr8	96644801	96646600	+	0	NA	intron (NM_016134, intron 1 of 7)	CpG	458	NM_016134	10404		NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
147743	chr20	62404521	62405230	+	0	NA	intron (NM_031215, intron 1 of 9)	intron (NM_031215, intron 1 of 9)	2408	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
55363	chr12	104253421	104253700	+	0	NA	intron (NM_001093771, intron 2 of 16)	intron (NM_001093771, intron 2 of 16)	-33472	NM_182729	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
212253	chr7	121510371	121510530	+	0	NA	Intergenic	HERVIP10B3-int|LTR|ERV1	-114082	NM_001040020	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
148478	chr20	64050251	64050350	+	0	NA	promoter-TSS (NM_018419)	promoter-TSS (NM_018419)	-661	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
141675	chr2	241800471	241800630	+	0	NA	intron (NM_022134, intron 2 of 3)	MER49|LTR|ERV1	-8643	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
29137	chr10	68562051	68562300	+	0	NA	intron (NM_030625, intron 1 of 11)	intron (NM_030625, intron 1 of 11)	1838	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
24826	chr10	324771	325000	+	0	NA	intron (NM_014974, intron 31 of 36)	intron (NM_014974, intron 31 of 36)	144891	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
54175	chr12	77032571	77032730	+	0	NA	intron (NM_203394, intron 9 of 12)	MIR|SINE|MIR	32919	NM_203394	144455		NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
90093	chr16	90033421	90033680	+	0	NA	intron (NM_001286208, intron 4 of 9)	AluJr|SINE|Alu	-3649	NR_122031	750		NM_001214	ENSG00000221819	GAS8-AS1	C16orf3	GAS8 antisense RNA 1	ncRNA
96391	chr17	40129421	40129880	+	0	NA	3' UTR (NM_001365921, exon 3 of 3)	3' UTR (NM_001365921, exon 3 of 3)	7679	NM_001365919	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
74684	chr15	62067731	62069100	+	0	NA	exon (NM_207322, exon 2 of 2)	exon (NM_207322, exon 2 of 2)	1438	NM_207322	145741		NM_207322	ENSG00000198535	C2CD4A	FAM148A|NLF1	C2 calcium dependent domain containing 4A	protein-coding
37769	chr11	32154151	32154500	+	0	NA	Intergenic	Intergenic	-10413	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
116649	chr19	18326771	18327130	+	0	NA	Intergenic	Intergenic	-3874	NM_012321	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
205825	chr7	24758371	24758530	+	0	NA	promoter-TSS (NM_004403)	promoter-TSS (NM_004403)	-511	NM_004403	1687		NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
36292	chr11	3824371	3825800	+	0	NA	exon (NM_001256239, exon 5 of 6)	exon (NM_001256239, exon 5 of 6)	15874	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
219377	chr8	70385451	70386000	+	0	NA	intron (NM_001321703, intron 1 of 22)	AluJr|SINE|Alu	17665	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
188576	chr5	157142151	157144780	+	0	NA	promoter-TSS (NM_004270)	promoter-TSS (NM_004270)	-600	NM_004270	9443		NM_004270	ENSG00000155868	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
147644	chr20	62194401	62194600	+	0	NA	intron (NM_001384347, intron 2 of 6)	intron (NM_001384347, intron 2 of 6)	11472	NR_169200	26164		NM_015666	ENSG00000101181	MTG2	GTPBP5|ObgH1|dJ1005F21.2	mitochondrial ribosome associated GTPase 2	protein-coding
239241	chrY	12981121	12981600	+	0	NA	Intergenic	Intergenic	75655	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
186850	chr5	139458701	139459930	+	0	NA	intron (NM_001293739, intron 1 of 9)	intron (NM_001293739, intron 1 of 9)	3428	NM_001293739	641700		NM_001077693	ENSG00000249751	ECSCR	ARIA|ECSM2	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding
25233	chr10	5974271	5974630	+	0	NA	intron (NM_001256765, intron 1 of 7)	L1ME1|LINE|L1	3093	NM_172200	3601		NM_002189	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor subunit alpha	protein-coding
225268	chr9	34378971	34379990	+	0	NA	intron (NM_032596, intron 6 of 6)	intron (NM_032596, intron 6 of 6)	2109	NM_147169	84688		NM_032596	ENSG00000164972	SPMIP6	C9orf24|CBE1|NYD-SP22|SMRP1|bA573M23.4	sperm microtubule inner protein 6	protein-coding
203185	chr6	167152721	167153580	+	0	NA	Intergenic	L1MB3|LINE|L1	4830	NM_005299	2853		NM_005299	ENSG00000120436	GPR31	12-HETER|HETER|HETER1	G protein-coupled receptor 31	protein-coding
37538	chr11	18670951	18671250	+	0	NA	Intergenic	MIRb|SINE|MIR	-27679	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
12547	chr1	108653121	108654050	+	0	NA	intron (NM_144584, intron 5 of 7)	L1MA5|LINE|L1	7508	NM_001102592	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
211228	chr7	102639671	102639830	+	0	NA	intron (NM_032959, intron 6 of 8)	AluSz|SINE|Alu	3041	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
197014	chr6	53323451	53324030	+	0	NA	intron (NM_001242830, intron 1 of 6)	AluSp|SINE|Alu	13877	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
138754	chr2	215454471	215454700	+	0	NA	intron (NR_110607, intron 1 of 3)	intron (NR_110607, intron 1 of 3)	878	NR_110607	102724849		NR_110607	ENSG00000225166	LOC102724849	-	uncharacterized LOC102724849	ncRNA
201753	chr6	149932871	149933030	+	0	NA	Intergenic	Intergenic	-1563	NR_134598	105378052		NR_134598	ENSG00000293239	LOC105378052	-	uncharacterized LOC105378052	ncRNA
132425	chr2	105828671	105829180	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-22922	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
238302	chrX	149493001	149493400	+	0	NA	intron (NR_104128, intron 6 of 8)	intron (NR_104128, intron 6 of 8)	12106	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
223502	chr8	144085701	144085900	+	0	NA	intron (NM_003801, intron 11 of 11)	intron (NM_003801, intron 11 of 11)	3166	NM_003801	8733		NM_003801	ENSG00000197858	GPAA1	GAA1|GPIBD15|hGAA1	glycosylphosphatidylinositol anchor attachment 1	protein-coding
175390	chr4	70735901	70736330	+	0	NA	intron (NM_001345840, intron 1 of 13)	AluJb|SINE|Alu	1705	NM_001345840	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
61183	chr13	49214901	49215330	+	0	NA	Intergenic	Intergenic	-5223	NM_001507	2862		NM_001507	ENSG00000102539	MLNR	GPR38|MTLR1	motilin receptor	protein-coding
110132	chr19	1598751	1599180	+	0	NA	intron (NM_006830, intron 2 of 2)	intron (NM_006830, intron 2 of 2)	-6100	NM_001281453	53615		NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
162861	chr3	49355201	49356250	+	0	NA	Intergenic	Intergenic	2628	NM_001329502	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
6861	chr1	31067251	31067550	+	0	NA	Intergenic	AluJr|SINE|Alu	-1683	NM_014676	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
159853	chr3	16520751	16521250	+	0	NA	Intergenic	Intergenic	-7301	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
174831	chr4	48296151	48297050	+	0	NA	Intergenic	Intergenic	-26762	NM_003215	7006		NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
158776	chr3	9413551	9413650	+	0	NA	intron (NM_001349451, intron 1 of 25)	intron (NM_001349451, intron 1 of 25)	15985	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
113264	chr19	8511451	8511730	+	0	NA	intron (NM_001146175, intron 5 of 7)	CpG	2577	NM_032370	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
135549	chr2	163346051	163346150	+	0	NA	Intergenic	Intergenic	389908	NM_001321825	55137		NM_018086	ENSG00000182263	FIGN	-	fidgetin, microtubule severing factor	protein-coding
177569	chr4	119371301	119371950	+	0	NA	Intergenic	Intergenic	39035	NR_037596	401149		NR_037596		LINC01061	KIKAT	long intergenic non-protein coding RNA 1061	ncRNA
205547	chr7	20270951	20271130	+	0	NA	Intergenic	LTR41|LTR|ERVL	-25668	NR_110117	101927769		NR_110117	ENSG00000226097	LOC101927769	-	uncharacterized LOC101927769	ncRNA
197387	chr6	73495921	73496180	+	0	NA	intron (NM_133645, intron 11 of 12)	intron (NM_133645, intron 11 of 12)	22388	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
27691	chr10	33132571	33133230	+	0	NA	Intergenic	L2c|LINE|L2	-16093	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
99171	chr17	49407621	49408900	+	0	NA	intron (NM_001281496, intron 5 of 6)	intron (NM_001281496, intron 5 of 6)	6598	NM_001281496	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
174516	chr4	40053971	40054880	+	0	NA	intron (NR_027277, intron 1 of 2)	AluSx1|SINE|Alu	-2425	NM_018177	55728		NM_018177	ENSG00000078177	N4BP2	B3BP	NEDD4 binding protein 2	protein-coding
83157	chr16	23459901	23460100	+	0	NA	Intergenic	AluSx3|SINE|Alu	-6811	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
216723	chr8	22406651	22406750	+	0	NA	intron (NM_015359, intron 2 of 8)	AluSc8|SINE|Alu	13864	NM_001351659	23516		NM_015359	ENSG00000104635	SLC39A14	HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
195697	chr6	38697551	38698130	+	0	NA	intron (NM_006708, intron 1 of 5)	intron (NM_006708, intron 1 of 5)	5305	NM_006708	2739		NM_006708	ENSG00000124767	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
109021	chr18	79721471	79722300	+	0	NA	intron (NM_048368, intron 10 of 11)	AluSx|SINE|Alu	40455	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
219520	chr8	74350151	74350850	+	0	NA	promoter-TSS (NM_001362931)	promoter-TSS (NM_001362931)	97	NM_018972	54332		NM_018972	ENSG00000104381	GDAP1	CMT4|CMT4A|CMTRIA	ganglioside induced differentiation associated protein 1	protein-coding
16575	chr1	155006701	155007380	+	0	NA	intron (NM_001377455, intron 2 of 3)	intron (NM_001377455, intron 2 of 3)	4238	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
160731	chr3	32454101	32454500	+	0	NA	3' UTR (NM_181472, exon 4 of 4)	3' UTR (NM_181472, exon 4 of 4)	48552	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
96856	chr17	42019671	42021030	+	0	NA	intron (NM_001144928, intron 1 of 3)	intron (NM_001144928, intron 1 of 3)	260	NM_001144929	28511		NM_017595	ENSG00000168256	NKIRAS2	KBRAS2|kappaB-Ras2	NFKB inhibitor interacting Ras like 2	protein-coding
64926	chr14	35689051	35689530	+	0	NA	exon (NM_001346249, exon 18 of 42)	exon (NM_001346249, exon 18 of 42)	73641	NR_135620	107399303		NR_135620		SNORA101B	ZL4	small nucleolar RNA, H/ACA box 101B	snoRNA
225296	chr9	34522691	34524180	+	0	NA	promoter-TSS (NM_198573)	promoter-TSS (NM_198573)	-445	NM_198573	375704		NM_198573	ENSG00000168913	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
177680	chr4	121795201	121795400	+	0	NA	Intergenic	AluSz|SINE|Alu	-6023	NM_005033	5393		NM_005033	ENSG00000123737	EXOSC9	PCH1D|PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
206258	chr7	29285151	29285830	+	0	NA	intron (NM_001293072, intron 1 of 12)	L3|LINE|CR1	-76520	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
103711	chr17	78828421	78829050	+	0	NA	intron (NM_001385180, intron 4 of 19)	AluJr4|SINE|Alu	12079	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
99878	chr17	56640251	56640350	+	0	NA	Intergenic	Intergenic	46601	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
40961	chr11	65352751	65353100	+	0	NA	3' UTR (NM_006268, exon 11 of 11)	3' UTR (NM_006268, exon 11 of 11)	-1826	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
200427	chr6	134980971	134981130	+	0	NA	intron (NM_006620, intron 13 of 17)	intron (NM_006620, intron 13 of 17)	-1618	NR_037435	100500880		NR_037435	ENSG00000283409	MIR3662	mir-3662	microRNA 3662	ncRNA
236771	chrX	78962721	78963650	+	0	NA	3' UTR (NM_001324218, exon 3 of 3)	3' UTR (NM_001324218, exon 3 of 3)	17794	NM_001324225	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
130429	chr2	85390951	85391850	+	0	NA	non-coding (NR_138132, exon 13 of 13)	non-coding (NR_138132, exon 13 of 13)	18432	NM_001320732	822		NM_001747	ENSG00000042493	CAPG	AFCP|HEL-S-66|MCP	capping actin protein, gelsolin like	protein-coding
32459	chr10	102640871	102641030	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3529	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
73593	chr15	44541621	44542300	+	0	NA	intron (NM_001284336, intron 2 of 5)	intron (NM_001284336, intron 2 of 5)	4813	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
88055	chr16	81455971	81456330	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	10980	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
233681	chrX	1169001	1169750	+	0	NA	Intergenic	Intergenic	43274	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
162955	chr3	49655051	49655150	+	0	NA	exon (NM_003458, exon 5 of 12)	exon (NM_003458, exon 5 of 12)	-19251	NM_001640	327		NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
167310	chr3	128714921	128715880	+	0	NA	Intergenic	Intergenic	-10783	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
127134	chr2	37665021	37665280	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	6492	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
80784	chr16	3214851	3216000	+	0	NA	promoter-TSS (NR_002169)	promoter-TSS (NR_002169)	-137	NR_002169	26184		NR_002169	ENSG00000203581	OR1F2P	OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91	olfactory receptor family 1 subfamily F member 2 pseudogene	pseudo
168884	chr3	152309921	152310550	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	11221	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
199842	chr6	127757301	127757650	+	0	NA	intron (NM_001010923, intron 4 of 5).2	MLT1L|LTR|ERVL-MaLR	97713	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
118328	chr19	35556271	35556430	+	0	NA	intron (NM_000704, intron 12 of 21)	L2a|LINE|L2	7308	NM_000704	495		NM_000704	ENSG00000105675	ATP4A	ATP6A	ATPase H+/K+ transporting subunit alpha	protein-coding
226921	chr9	79580151	79580700	+	0	NA	intron (NM_001351556, intron 4 of 18)	intron (NM_001351556, intron 4 of 18)	7248	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
150020	chr21	37226551	37226650	+	0	NA	intron (NM_006052, intron 7 of 7)	intron (NM_006052, intron 7 of 7)	18097	NR_026719	257203		NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9	ncRNA
140021	chr2	231039071	231039850	+	0	NA	intron (NM_001144994, intron 1 of 2)	intron (NM_001144994, intron 1 of 2)	1937	NM_001144994	257407		NM_001144994	ENSG00000204128	C2orf72	-	chromosome 2 open reading frame 72	protein-coding
26852	chr10	24880321	24880580	+	0	NA	intron (NM_020200, intron 3 of 8)	AluSx3|SINE|Alu	72156	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
61728	chr13	74125221	74126230	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	8204	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
48540	chr12	10217371	10217730	+	0	NA	intron (NM_031412, intron 1 of 3)	AluSz|SINE|Alu	4673	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
213067	chr7	131075651	131076350	+	0	NA	intron (NR_109852, intron 2 of 5)	MSTC|LTR|ERVL-MaLR	31030	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
60026	chr13	32585601	32586900	+	0	NA	promoter-TSS (NM_015032)	promoter-TSS (NM_015032)	-202	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
44061	chr11	95256251	95256550	+	0	NA	Intergenic	Intergenic	-23925	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
33245	chr10	114369451	114369550	+	0	NA	intron (NM_001351072, intron 1 of 20)	AluY|SINE|Alu	35002	NM_001001936	84632		NM_032550	ENSG00000169129	AFAP1L2	CTB-1144G6.4|KIAA1914|XB130	actin filament associated protein 1 like 2	protein-coding
162605	chr3	48700851	48701150	+	0	NA	intron (NM_016291, intron 1 of 5)	L1M5|LINE|L1	-15085	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
189151	chr5	171380521	171380780	+	0	NA	Intergenic	AluSx1|SINE|Alu	6110	NR_037474	100500831		NR_037474	ENSG00000264249	MIR3912	mir-3912	microRNA 3912	ncRNA
19827	chr1	182841171	182842150	+	0	NA	intron (NM_001357, intron 1 of 27)	intron (NM_001357, intron 1 of 27)	-2069	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
14136	chr1	121007671	121007830	+	0	NA	intron (NR_135813, intron 2 of 2)	intron (NR_135813, intron 2 of 2)	44102	NR_160532	105369199		NR_160532		LOC105369199	-	NBPF member 6 pseudogene	pseudo
161814	chr3	45553171	45553530	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-41401	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
222239	chr8	133138771	133139930	+	0	NA	Intergenic	Intergenic	-36748	NM_001045557	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
216624	chr8	22098451	22098750	+	0	NA	exon (NM_001354250, exon 7 of 17)	exon (NM_001354250, exon 7 of 17)	9446	NR_148727	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
181692	chr5	50590071	50590680	+	0	NA	Intergenic	Intergenic	-75556	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
75914	chr15	70090201	70090400	+	0	NA	intron (NM_001282982, intron 2 of 17)	intron (NM_001282982, intron 2 of 17)	4489	NM_001282982	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
49004	chr12	14217871	14218030	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	-147682	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
188196	chr5	150658971	150659230	+	0	NA	3' UTR (NM_007286, exon 3 of 3)	3' UTR (NM_007286, exon 3 of 3)	-1741	NM_133371	91977		NM_133371	ENSG00000164591	MYOZ3	CS-3|CS3|FATZ-3|FRP3	myozenin 3	protein-coding
96465	chr17	40232071	40232230	+	0	NA	intron (NM_133264, intron 1 of 7)	AluJb|SINE|Alu	12846	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
223494	chr8	144071051	144071550	+	0	NA	Intergenic	(CCCTC)n|Simple_repeat|Simple_repeat	-7372	NM_019037	54512		NM_019037	ENSG00000178896	EXOSC4	RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A	exosome component 4	protein-coding
211835	chr7	108517551	108518080	+	0	NA	intron (NM_001256009, intron 1 of 9)	AluJo|SINE|Alu	8320	NM_001256007	50640		NM_015723	ENSG00000135241	PNPLA8	IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma	patatin like phospholipase domain containing 8	protein-coding
125643	chr2	19711601	19711800	+	0	NA	Intergenic	UCON78|DNA|DNA	-157154	NR_033875	400946		NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
92096	chr17	7568371	7568600	+	0	NA	intron (NM_015670, intron 7 of 10)	AluSg|SINE|Alu	-4340	NM_001416	1973		NM_001416	ENSG00000161960	EIF4A1	DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I	eukaryotic translation initiation factor 4A1	protein-coding
173887	chr4	24570551	24571000	+	0	NA	exon (NM_001358, exon 3 of 14)	exon (NM_001358, exon 3 of 14)	13779	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
115466	chr19	15353971	15354130	+	0	NA	3' UTR (NM_005858, exon 14 of 14)	3' UTR (NM_005858, exon 14 of 14)	-21511	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
96490	chr17	40287441	40288650	+	0	NA	5' UTR (NM_001254, exon 1 of 12)	5' UTR (NM_001254, exon 1 of 12)	166	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
145716	chr20	45039151	45039400	+	0	NA	intron (NM_006282, intron 10 of 10)	Charlie1a|DNA|hAT-Charlie	61852	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
16673	chr1	155186221	155186730	+	0	NA	intron (NM_001371720, intron 11 of 11)	(GT)n|Simple_repeat|Simple_repeat	6434	NM_001204287	4582		NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|ADTKD2|CA 15-3|CD227|Ca15-3|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding
175127	chr4	55318571	55318980	+	0	NA	Intergenic	Intergenic	-27467	NM_024592	79644		NM_024592	ENSG00000128039	SRD5A3	CDG1P|CDG1Q|KRIZI|S5AR|S5AR 3|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
49246	chr12	19439051	19440100	+	0	NA	promoter-TSS (NM_001363736)	promoter-TSS (NM_001363736)	83	NM_001363736	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
121426	chr19	47019171	47019930	+	0	NA	promoter-TSS (NM_002517)	promoter-TSS (NM_002517)	-287	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
205238	chr7	8017451	8017850	+	0	NA	intron (NM_138426, intron 2 of 7)	intron (NM_138426, intron 2 of 7)	48854	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
23077	chr1	226647821	226648080	+	0	NA	intron (NM_002221, intron 3 of 7)	intron (NM_002221, intron 3 of 7)	27118	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
107505	chr18	47927171	47927530	+	0	NA	intron (NM_001135937, intron 1 of 9)	intron (NM_001135937, intron 1 of 9)	3309	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
194853	chr6	34484501	34485450	+	0	NA	intron (NM_020804, intron 1 of 9)	L2a|LINE|L2	18899	NM_020804	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
196745	chr6	45419521	45420200	+	0	NA	intron (NM_001024630, intron 2 of 8)	CpG	-2415	NM_001369405	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
125744	chr2	20670351	20670650	+	0	NA	exon (NM_182828, exon 2 of 2)	exon (NM_182828, exon 2 of 2)	3356	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
236893	chrX	84556031	84556150	+	0	NA	Intergenic	L1PA5|LINE|L1	-53637	NM_001177478	139324		NM_144657	ENSG00000165259	HDX	CXorf43|D030011N01Rik	highly divergent homeobox	protein-coding
73695	chr15	45024871	45025230	+	0	NA	intron (NM_003104, intron 1 of 8)	intron (NM_003104, intron 1 of 8)	1855	NR_034039	6652		NM_003104	ENSG00000140263	SORD	HEL-S-95n|HMNR8|RDH|SDH|SORD1|SORDD|XDH	sorbitol dehydrogenase	protein-coding
5396	chr1	25486701	25487000	+	0	NA	intron (NM_001282564, intron 6 of 8)	intron (NM_001282564, intron 6 of 8)	55953	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
79414	chr16	682901	683100	+	0	NA	TTS (NM_005861)	TTS (NM_005861)	1334	NM_001323918	339123		NM_001005920	ENSG00000161999	JMJD8	C16orf20|PP14397	jumonji domain containing 8	protein-coding
22092	chr1	211542301	211542500	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	36761	NM_021194	7779		NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
39224	chr11	57644571	57645230	+	0	NA	TTS (NM_145008)	TTS (NM_145008)	3702	NR_029673	406919		NR_029673	ENSG00000208009	MIR130A	MIRN130A|miRNA130A|mir-130a	microRNA 130a	ncRNA
197155	chr6	59559871	59560230	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1598604	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
220828	chr8	102849101	102849300	+	0	NA	intron (NM_148174, intron 2 of 11)	AluSc|SINE|Alu	14963	NM_001301668	51582		NM_015878	ENSG00000155096	AZIN1	AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
104639	chr17	81445421	81445880	+	0	NA	exon (NM_001291324, exon 10 of 29)	exon (NM_001291324, exon 10 of 29)	5538	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
75066	chr15	64274671	64275030	+	0	NA	intron (NM_001329607, intron 2 of 11)	intron (NM_001329607, intron 2 of 11)	81323	NM_001329606	53944		NM_022048	ENSG00000169118	CSNK1G1	CK1gamma1	casein kinase 1 gamma 1	protein-coding
234637	chrX	19964451	19964630	+	0	NA	intron (NM_001367774, intron 3 of 10)	MIR3|SINE|MIR	5724	NM_001367774	256643		NM_198279	ENSG00000173681	BCLAF3	CXorf23	BCLAF1 and THRAP3 family member 3	protein-coding
137804	chr2	199954201	199954400	+	0	NA	intron (NR_004862, intron 1 of 7)	AluJb|SINE|Alu	-1017	NR_161377	79568		NM_024520	ENSG00000162972	MAIP1	C2orf47	matrix AAA peptidase interacting protein 1	protein-coding
154842	chr22	37081651	37081950	+	0	NA	intron (NM_153609, intron 10 of 17)	MIR3|SINE|MIR	21856	NM_153609	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
28175	chr10	43785371	43785530	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	4967	NR_002726	10151		NM_005758		HNRNPA3P1	D10S102|FBRNP|HNRPA3|HNRPA3P1	heterogeneous nuclear ribonucleoprotein A3 pseudogene 1	pseudo
58826	chr12	132837171	132837400	+	0	NA	3' UTR (NM_001161346, exon 18 of 18)	3' UTR (NM_001161346, exon 18 of 18)	-8416	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
74810	chr15	63469221	63469680	+	0	NA	Intergenic	L1MC4|LINE|L1	-35061	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
118533	chr19	36051451	36051550	+	0	NA	TTS (NM_001347907)	TTS (NM_001347907)	2785	NM_152658	199745		NM_152658	ENSG00000161277	THAP8	-	THAP domain containing 8	protein-coding
73660	chr15	44718121	44718580	+	0	NA	TTS (NM_004048)	TTS (NM_004048)	506	NR_162102	113218500		NR_162102		MIR10393	-	microRNA 10393	ncRNA
77346	chr15	82538601	82539130	+	0	NA	intron (NR_111944, intron 3 of 5)	intron (NR_111944, intron 3 of 5)	1592	NM_001021	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
217285	chr8	27361671	27362580	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	36561	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
55803	chr12	108702101	108702300	+	0	NA	intron (NM_014325, intron 1 of 10)	intron (NM_014325, intron 1 of 10)	798	NM_001105237	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
70531	chr14	102500001	102500800	+	0	NA	3' UTR (NM_014844, exon 20 of 20)	3' UTR (NM_014844, exon 20 of 20)	9376	NM_152326	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
14602	chr1	145275501	145275700	+	0	NA	Intergenic	Intergenic	-5516	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
200265	chr6	132530351	132531000	+	0	NA	Intergenic	Intergenic	-7613	NM_175057	134860		NM_175057	ENSG00000237110	TAAR9	TA3|TAR3|TAR9|TRAR3	trace amine associated receptor 9	protein-coding
69166	chr14	92601221	92601680	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	25216	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
131300	chr2	96110021	96110400	+	0	NA	Intergenic	Intergenic	6361	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
133053	chr2	112242301	112242500	+	0	NA	intron (NM_032494, intron 2 of 8)	Cheshire|DNA|hAT-Charlie	12642	NM_032494	84524		NM_032494	ENSG00000144161	ZC3H8	Fliz1|ZC3HDC8	zinc finger CCCH-type containing 8	protein-coding
107164	chr18	35343471	35345430	+	0	NA	promoter-TSS (NM_001375815)	promoter-TSS (NM_001375815)	-30	NM_001308123	7572		NM_006965	ENSG00000172466	ZNF24	KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191	zinc finger protein 24	protein-coding
105977	chr18	5543201	5543400	+	0	NA	intron (NM_001384691, intron 1 of 20)	CpG	697	NM_001384696	23136		NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1 like 3	protein-coding
134563	chr2	144198151	144198250	+	0	NA	intron (NM_001354351, intron 7 of 15)	AluJr|SINE|Alu	39139	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
110184	chr19	1671171	1671330	+	0	NA	Intergenic	AluSz|SINE|Alu	-18635	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
167983	chr3	136728151	136729050	+	0	NA	intron (NM_005862, intron 1 of 33)	MIR|SINE|MIR	23778	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
235979	chrX	53747621	53748880	+	0	NA	Intergenic	L1MA9|LINE|L1	-61531	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
67220	chr14	68947271	68947430	+	0	NA	intron (NM_001130004, intron 1 of 21)	MIRb|SINE|MIR	31952	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
25155	chr10	4849201	4849960	+	0	NA	Intergenic	L1MA6|LINE|L1	23373	NM_001040177	83592		NM_031436	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|HTSP1|LoopADR|TAKR|hTSP|htAKR	aldo-keto reductase family 1 member E2	protein-coding
167212	chr3	128430251	128430350	+	0	NA	Intergenic	Intergenic	-33294	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
99607	chr17	50544671	50544830	+	0	NA	TTS (NM_017957)	TTS (NM_017957)	-2339	NM_001258373	64847		NM_022827	ENSG00000006282	SPATA20	HEL-S-98|SSP411|Tisp78	spermatogenesis associated 20	protein-coding
238081	chrX	136203401	136204150	+	0	NA	intron (NM_001159699, intron 1 of 5)	intron (NM_001159699, intron 1 of 5)	-1127	NM_001369331	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
199275	chr6	111867101	111867300	+	0	NA	intron (NM_002037, intron 1 of 13)	AluSq2|SINE|Alu	5871	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
32417	chr10	102473371	102474200	+	0	NA	intron (NM_024789, intron 8 of 9)	intron (NM_024789, intron 8 of 9)	12390	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
133359	chr2	117649651	117649850	+	0	NA	Intergenic	L1PA3|LINE|L1	-164941	NM_006773	8886		NM_006773	ENSG00000088205	DDX18	Has1|MrDb	DEAD-box helicase 18	protein-coding
128559	chr2	60888471	60889130	+	0	NA	intron (NM_001291746, intron 1 of 9)	L2|LINE|L2	7226	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
42489	chr11	70025871	70026180	+	0	NA	intron (NM_001378092, intron 1 of 27)	(ATG)n|Simple_repeat|Simple_repeat	37899	NR_120530	101928443		NR_120529	ENSG00000248844	LINC02753	-	long intergenic non-protein coding RNA 2753	ncRNA
203357	chr6	170304601	170305100	+	0	NA	intron (NM_001286380, intron 1 of 10)	L2b|LINE|L2	-1872	NM_001286381	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
202269	chr6	157033201	157033900	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-2877	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
132267	chr2	104824351	104824500	+	0	NA	intron (NR_037883, intron 1 of 3)	(TGG)n|Simple_repeat|Simple_repeat	27051	NR_131234	100506421		NR_037883	ENSG00000233639	PANTR1	LINC01158|linc-Brn1a|linc-POU3F3	POU3F3 adjacent non-coding transcript 1	ncRNA
78629	chr15	94242451	94242550	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	10939	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
145133	chr20	38817051	38817450	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	11553	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
213748	chr7	140447571	140448130	+	0	NA	Intergenic	Intergenic	31655	NM_013446	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
156086	chr22	40053701	40054300	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluJb|SINE|Alu	9183	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
3299	chr1	15347021	15347580	+	0	NA	intron (NM_052929, intron 17 of 30)	intron (NM_052929, intron 17 of 30)	-3417	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
71550	chr14	106276151	106276930	+	0	NA	Intergenic	Intergenic	-11134	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
231011	chr9	129557471	129557830	+	0	NA	Intergenic	Intergenic	-51234	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
178420	chr4	147779371	147779730	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	-3045	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
62023	chr13	86760771	86760930	+	0	NA	Intergenic	HERVFH21-int|LTR|ERV1	-151070	NR_132371	106144533		NR_132371		LINC00430	-	long intergenic non-protein coding RNA 430	ncRNA
218667	chr8	57976551	57976650	+	0	NA	Intergenic	Intergenic	-1758	NR_130934	100505477		NR_130934	ENSG00000205293	LINC01602	T1560	long intergenic non-protein coding RNA 1602	ncRNA
72227	chr15	30262151	30262270	+	0	NA	Intergenic	Intergenic	66174	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
238200	chrX	137051901	137052940	+	0	NA	Intergenic	CpG	-18425	NM_054021	83550		NM_054021	ENSG00000165370	GPR101	GPCR6|PAGH2|PITA2	G protein-coupled receptor 101	protein-coding
175292	chr4	67632571	67632730	+	0	NA	intron (NM_018227, intron 23 of 32)	L2|LINE|L2	68505	NM_018227	55236		NM_018227	ENSG00000033178	UBA6	E1-L2|MOP-4|UBE1L2	ubiquitin like modifier activating enzyme 6	protein-coding
104701	chr17	81537671	81538700	+	0	NA	Intergenic	Intergenic	9808	NM_012418	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
155685	chr22	39068471	39068630	+	0	NA	Intergenic	MER49|LTR|ERV1	-8455	NM_001349437	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
232064	chr9	133473371	133473730	+	0	NA	exon (NM_017585, exon 8 of 10)	exon (NM_017585, exon 8 of 10)	5549	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
222987	chr8	143244571	143244930	+	0	NA	Intergenic	Intergenic	-2189	NM_001271156	286128		NM_173832	ENSG00000181638	ZFP41	ZNF753|zfp-41	ZFP41 zinc finger protein	protein-coding
188168	chr5	150457021	150457630	+	0	NA	Intergenic	L2a|LINE|L2	-7586	NM_001025071	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
151403	chr21	45988871	45989750	+	0	NA	intron (NM_001848, intron 9 of 34)	intron (NM_001848, intron 9 of 34)	7540	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
146206	chr20	48782851	48783050	+	0	NA	intron (NM_020820, intron 1 of 39)	L2a|LINE|L2	45049	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
127182	chr2	38386601	38387200	+	0	NA	Intergenic	Intergenic	-8316	NM_001330462	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
168832	chr3	152248651	152248750	+	0	NA	intron (NM_001376839, intron 2 of 10)	L1PA3|LINE|L1	5068	NM_001376819	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
135072	chr2	156480171	156480950	+	0	NA	intron (NM_000408, intron 2 of 16)	intron (NM_000408, intron 2 of 16)	44181	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
112600	chr19	6730471	6731180	+	0	NA	intron (NM_020171, intron 17 of 17)	intron (NM_020171, intron 17 of 17)	5953	NR_106849	102465474		NR_106849	ENSG00000283950	MIR6791	hsa-mir-6791	microRNA 6791	ncRNA
56404	chr12	113224201	113224400	+	0	NA	intron (NM_017901, intron 1 of 27)	MIR|SINE|MIR	2836	NM_017901	53373		NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
39712	chr11	61756171	61757030	+	0	NA	intron (NR_026882, intron 2 of 3)	L2b|LINE|L2	1064	NR_026882	26070		NR_026882	ENSG00000124915	MYRF-AS1	DKFZP434K028	MYRF antisense RNA 1	ncRNA
212106	chr7	116207871	116208630	+	0	NA	Intergenic	L2|LINE|L2	-2289	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
60582	chr13	41919451	41919750	+	0	NA	intron (NM_015058, intron 2 of 44)	L1MA9|LINE|L1	41485	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
190057	chr5	177593571	177593930	+	0	NA	exon (NM_017510, exon 3 of 5)	exon (NM_017510, exon 3 of 5)	1547	NM_017510	54732		NM_017510	ENSG00000184840	TMED9	GMP25|HSGP25L2G|p24a2|p24alpha2|p25	transmembrane p24 trafficking protein 9	protein-coding
225729	chr9	37024421	37025680	+	0	NA	intron (NR_103999, intron 1 of 8)	intron (NR_103999, intron 1 of 8)	9218	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
185830	chr5	132459971	132460450	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	30563	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
60318	chr13	40657501	40657700	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSz|SINE|Alu	9041	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
93031	chr17	17277421	17277880	+	0	NA	intron (NM_001316354, intron 1 of 11)	AluJo|SINE|Alu	3048	NM_001199125	8533		NM_003653	ENSG00000141030	COPS3	CSN3|SGN3	COP9 signalosome subunit 3	protein-coding
184391	chr5	98879051	98879350	+	0	NA	intron (NR_157078, intron 24 of 36)	AluJb|SINE|Alu	-49362	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
76642	chr15	75623671	75623930	+	0	NA	intron (NM_001042588, intron 1 of 8)	intron (NM_001042588, intron 1 of 8)	1925	NM_005701	10073		NM_005701	ENSG00000169371	SNUPN	KPNBL|RNUT1|Snurportin1	snurportin 1	protein-coding
173506	chr4	9522951	9523200	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	33241	NR_031688	100302277		NR_031688	ENSG00000221275	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2	microRNA 548i-2	ncRNA
115498	chr19	15399101	15399300	+	0	NA	intron (NR_111971, intron 10 of 15)	intron (NR_111971, intron 10 of 15)	-19413	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
211769	chr7	107463151	107464080	+	0	NA	intron (NM_001379511, intron 6 of 20)	intron (NM_001379511, intron 6 of 20)	-6442	NM_005295	2845		NM_005295	ENSG00000172209	GPR22	-	G protein-coupled receptor 22	protein-coding
68745	chr14	91035201	91035680	+	0	NA	intron (NM_001322228, intron 1 of 15)	intron (NM_001322228, intron 1 of 15)	24684	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
155418	chr22	38403101	38403530	+	0	NA	Intergenic	L2b|LINE|L2	-4389	NR_002821	400927		NM_001034843		TPTEP2	Z98749.2	TPTE pseudogene 2	pseudo
5588	chr1	26026821	26027280	+	0	NA	intron (NM_004455, intron 1 of 10)	L3|LINE|CR1	5275	NM_004455	2134		NM_004455	ENSG00000158008	EXTL1	EXTL	exostosin like glycosyltransferase 1	protein-coding
6225	chr1	27512101	27512300	+	0	NA	Intergenic	AluSx|SINE|Alu	-22033	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
21704	chr1	206736121	206736380	+	0	NA	Intergenic	Intergenic	34353	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
117315	chr19	19506671	19507700	+	0	NA	non-coding (NR_169268, exon 12 of 12)	non-coding (NR_169268, exon 12 of 12)	8363	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
224512	chr9	19101271	19101450	+	0	NA	intron (NM_017645, intron 1 of 16)	AluJr|SINE|Alu	1544	NM_017645	54801		NM_017645	ENSG00000147874	HAUS6	Dgt6|FAM29A	HAUS augmin like complex subunit 6	protein-coding
157395	chr22	44752271	44753100	+	0	NA	intron (NM_181335, intron 1 of 11)	CpG	110	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
112950	chr19	7753571	7753730	+	0	NA	Intergenic	L1M5|LINE|L1	-6116	NM_001144897	30835		NM_021155	ENSG00000090659	CD209	CDSIGN|CLEC4L|DC-SIGN|DC-SIGN1|hDC-SIGN	CD209 molecule	protein-coding
40872	chr11	65107251	65107750	+	0	NA	intron (NR_073519, intron 2 of 9)	intron (NR_073519, intron 2 of 9)	-4354	NM_001277233	7108		NM_003273	ENSG00000149809	TM7SF2	ANG1|C14SR|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
83119	chr16	22519801	22520000	+	0	NA	intron (NM_001135865, intron 1 of 6)	(C)n|Simple_repeat|Simple_repeat	6377	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
180399	chr5	10334651	10334950	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-18895	NM_005885	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
83317	chr16	24610401	24610600	+	0	NA	intron (NM_001351850, intron 1 of 23)	intron (NM_001351850, intron 1 of 23)	295	NM_001351850	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
91713	chr17	6556471	6557030	+	0	NA	promoter-TSS (NM_031220)	promoter-TSS (NM_031220)	-195	NM_001165966	83394		NM_031220	ENSG00000091622	PITPNM3	ACKR6|CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
219694	chr8	80866701	80867100	+	0	NA	intron (NM_001033723, intron 1 of 8)	FLAM_A|SINE|Alu	7568	NM_001367783	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
221102	chr8	117862051	117862350	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	58713	NR_145799	109623457		NR_145799		SNORD168	-	small nucleolar RNA, C/D box 168	snoRNA
30571	chr10	79929371	79929830	+	0	NA	intron (NR_033857, intron 5 of 5)	intron (NR_033857, intron 5 of 5)	9422	NR_002724	8512		NR_002724	ENSG00000293431	MBL1P	COLEC3P|MBL1P1	mannose binding lectin 1, pseudogene	pseudo
969	chr1	1789051	1789500	+	0	NA	intron (NM_001282539, intron 8 of 10)	intron (NM_001282539, intron 8 of 10)	-9244	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
218305	chr8	42538721	42539350	+	0	NA	intron (NM_006749, intron 1 of 10)	intron (NM_006749, intron 1 of 10)	-2113	NM_001135676	114926		NM_138436	ENSG00000176209	SMIM19	C8orf40	small integral membrane protein 19	protein-coding
130135	chr2	74834701	74835680	+	0	NA	promoter-TSS (NM_001371525)	promoter-TSS (NM_001371525)	20	NM_001371525	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
22322	chr1	213987721	213988680	+	0	NA	promoter-TSS (NM_002763)	promoter-TSS (NM_002763)	227	NM_001270616	5629		NM_002763	ENSG00000117707	PROX1	-	prospero homeobox 1	protein-coding
203965	chr7	1563701	1564300	+	0	NA	Intergenic	Intergenic	6032	NM_032302	84262		NM_032302	ENSG00000157778	PSMG3	C7orf48|PAC3	proteasome assembly chaperone 3	protein-coding
98910	chr17	48599471	48599630	+	0	NA	intron (NM_001369397, intron 1 of 2)	intron (NM_001369397, intron 1 of 2)	3592	NR_033205	404266		NR_033201	ENSG00000233101	HOXB-AS3	-	HOXB cluster antisense RNA 3	ncRNA
153344	chr22	24411851	24412150	+	0	NA	intron (NM_001145468, intron 14 of 15)	intron (NM_001145468, intron 14 of 15)	-11597	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
186633	chr5	138550101	138550930	+	0	NA	Intergenic	AluY|SINE|Alu	-7279	NM_001364160	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
4479	chr1	21439471	21441000	+	0	NA	promoter-TSS (NM_001377493)	promoter-TSS (NM_001377493)	98	NM_001377493	84224		NM_032264	ENSG00000142794	NBPF3	AE2	NBPF member 3	protein-coding
6277	chr1	27597851	27597950	+	0	NA	intron (NM_001029882, intron 1 of 6)	(TCTC)n|Simple_repeat|Simple_repeat	5594	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
100709	chr17	63845001	63845250	+	0	NA	Intergenic	Intergenic	-2440	NM_001098426	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
230707	chr9	128778801	128779000	+	0	NA	Intergenic	LTR41|LTR|ERVL	-6414	NM_001375956	10444		NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related cell cycle regulator	protein-coding
137210	chr2	191206371	191207580	+	0	NA	Intergenic	Intergenic	-38429	NM_001330237	4430		NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
47606	chr12	5796551	5796650	+	0	NA	intron (NM_001364791, intron 10 of 24)	intron (NM_001364791, intron 10 of 24)	148659	NM_001278596	57101		NM_020373	ENSG00000047617	ANO2	C12orf3|TMEM16B	anoctamin 2	protein-coding
27789	chr10	35462371	35462750	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	125686	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
229991	chr9	126859101	126859300	+	0	NA	Intergenic	Intergenic	-1439	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
184897	chr5	112863451	112863980	+	0	NA	intron (NM_001204194, intron 2 of 3)	AluJb|SINE|Alu	2428	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
11464	chr1	89959171	89959330	+	0	NA	Intergenic	MER21C|LTR|ERVL	35716	NR_002830	492303		NR_002830		GEMIN8P4	-	gem nuclear organelle associated protein 8 pseudogene 4	pseudo
55071	chr12	96502051	96502150	+	0	NA	intron (NM_001367885, intron 2 of 68)	intron (NM_001367885, intron 2 of 68)	12523	NM_001367885	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
51079	chr12	49954071	49954700	+	0	NA	intron (NR_110590, intron 1 of 2)	intron (NR_110590, intron 1 of 2)	3648	NM_000486	359		NM_000486	ENSG00000167580	AQP2	AQP-CD|NDI2|WCH-CD	aquaporin 2	protein-coding
177148	chr4	108127851	108128380	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	38682	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
192963	chr6	27863121	27863380	+	0	NA	Intergenic	Intergenic	-2067	NM_003511	8332		NM_003511	ENSG00000276903	H2AC16	H2A.i|H2A/i|H2AC11|H2AC13|H2AC15|H2AC17|H2AFI|HIST1H2AL|dJ193B12.9	H2A clustered histone 16	protein-coding
135168	chr2	157789871	157790230	+	0	NA	intron (NM_001111067, intron 3 of 10)	intron (NM_001111067, intron 3 of 10)	48580	NM_001347667	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
129141	chr2	65430151	65431900	+	0	NA	intron (NM_181784, intron 1 of 5)	CpG	1574	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
216590	chr8	22040671	22040830	+	0	NA	Intergenic	Intergenic	-2003	NM_001304478	8822		NM_003867	ENSG00000158815	FGF17	FGF-13|FGF-17|HH20	fibroblast growth factor 17	protein-coding
106091	chr18	9141801	9142980	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	4827	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
184436	chr5	99030451	99030950	+	0	NA	Intergenic	AluJr|SINE|Alu	101566	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
207333	chr7	44058271	44058430	+	0	NA	intron (NM_001362723, intron 7 of 12)	intron (NM_001362723, intron 7 of 12)	6584	NR_106896	102466985		NR_106896	ENSG00000284067	MIR6837	hsa-mir-6837	microRNA 6837	ncRNA
219793	chr8	81191501	81192150	+	0	NA	Intergenic	Intergenic	-79757	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
176758	chr4	102299671	102299930	+	0	NA	intron (NM_022154, intron 5 of 7)	intron (NM_022154, intron 5 of 7)	24512	NM_001135148	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
84171	chr16	29811011	29812900	+	0	NA	promoter-TSS (NM_001256443)	promoter-TSS (NM_001256443)	-238	NM_001256442	112476		NM_145239	ENSG00000167371	PRRT2	BFIC2|BFIS2|DSPB3|DYT10|EKD1|FICCA|ICCA|IFITMD1|PKC	proline rich transmembrane protein 2	protein-coding
92326	chr17	8146521	8146800	+	0	NA	exon (NM_002616, exon 15 of 23)	exon (NM_002616, exon 15 of 23)	-1589	NR_106943	102465532		NR_106943	ENSG00000284117	MIR6883	hsa-mir-6883	microRNA 6883	ncRNA
81146	chr16	4406551	4406980	+	0	NA	intron (NM_001201473, intron 3 of 25)	AluSq2|SINE|Alu	9132	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
188072	chr5	150122171	150122330	+	0	NA	intron (NM_001355016, intron 14 of 21)	intron (NM_001355016, intron 14 of 21)	-8878	NM_005211	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
82542	chr16	18401381	18402680	+	0	NA	promoter-TSS (NR_146331)	promoter-TSS (NR_146331)	-105	NR_146331	110006322		NR_146331		PKD1P5-LOC105376752	-	PKD1P5-LOC105376752 readthrough	pseudo
26581	chr10	21998021	21998630	+	0	NA	intron (NM_022365, intron 1 of 11)	AluSx1|SINE|Alu	5405	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
57212	chr12	121506151	121506450	+	0	NA	intron (NM_001005366, intron 11 of 22)	intron (NM_001005366, intron 11 of 22)	-61948	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
138830	chr2	216403951	216404350	+	0	NA	Intergenic	Intergenic	-8334	NM_014140	50485		NM_014140	ENSG00000138375	SMARCAL1	HARP|HHARP	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1	protein-coding
144538	chr20	35717721	35717980	+	0	NA	intron (NM_184234, intron 9 of 16)	AluJb|SINE|Alu	18445	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
165070	chr3	71460121	71460580	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluSx1|SINE|Alu	81739	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
12666	chr1	109282101	109282300	+	0	NA	intron (NM_032636, intron 3 of 7)	intron (NM_032636, intron 3 of 7)	944	NM_001350237	84722		NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
149709	chr21	34046871	34047430	+	0	NA	Intergenic	Intergenic	-26428	NM_032476	64968		NM_032476	ENSG00000243927	MRPS6	C21orf101|MRP-S6|RPMS6|S6mt|bS6m	mitochondrial ribosomal protein S6	protein-coding
203851	chr7	1452401	1452850	+	0	NA	intron (NM_182924, intron 1 of 16)	intron (NM_182924, intron 1 of 16)	6845	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
82054	chr16	12768101	12768300	+	0	NA	intron (NM_018340, intron 2 of 3)	intron (NM_018340, intron 2 of 3)	35687	NM_001099455	55313		NM_018340	ENSG00000103381	CPPED1	CSTP1	calcineurin like phosphoesterase domain containing 1	protein-coding
186734	chr5	139292651	139295050	+	0	NA	promoter-TSS (NM_001194956)	promoter-TSS (NM_001194956)	100	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
54733	chr12	93683021	93683280	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	4381	NM_001330126	8738		NM_003805	ENSG00000169372	CRADD	MRT34|RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding
142372	chr20	3799041	3800330	+	0	NA	promoter-TSS (NM_001287524)	promoter-TSS (NM_001287524)	-377	NM_001287524	994		NM_004358	ENSG00000101224	CDC25B	-	cell division cycle 25B	protein-coding
84878	chr16	31183811	31184550	+	0	NA	intron (NR_028388, intron 4 of 13)	intron (NR_028388, intron 4 of 13)	4041	NM_004960	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
235690	chrX	48716051	48716650	+	0	NA	Intergenic	Intergenic	19616	NM_003173	6839		NM_003173	ENSG00000101945	SUV39H1	H3-K9-HMTase 1|KMT1A|MG44|SUV39H	SUV39H1 histone lysine methyltransferase	protein-coding
178602	chr4	151991971	151992130	+	0	NA	Intergenic	Intergenic	-108703	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
45165	chr11	117210651	117211230	+	0	NA	intron (NM_004716, intron 12 of 16)	AluSz6|SINE|Alu	-9026	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
1953	chr1	6576421	6576680	+	0	NA	exon (NM_177540, exon 3 of 5)	exon (NM_177540, exon 3 of 5)	-3444	NM_001278648	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
135196	chr2	158546521	158546850	+	0	NA	intron (NM_003628, intron 2 of 21)	intron (NM_003628, intron 2 of 21)	88792	NM_001377218	8502		NM_003628	ENSG00000144283	PKP4	p0071	plakophilin 4	protein-coding
114860	chr19	13860471	13860930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1336	NR_146095	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
97247	chr17	42983051	42983700	+	0	NA	intron (NM_001321381, intron 2 of 5)	AluJb|SINE|Alu	2810	NM_001321381	146923		NM_173079	ENSG00000198863	RUNDC1	RUND1	RUN domain containing 1	protein-coding
207039	chr7	39453771	39453950	+	0	NA	intron (NM_001370959, intron 8 of 9)	intron (NM_001370959, intron 8 of 9)	-47514	NR_046711	100861520		NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	ncRNA
137037	chr2	190792821	190793330	+	0	NA	Intergenic	Intergenic	-87746	NM_001256310	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
156534	chr22	41423571	41423830	+	0	NA	Intergenic	AluSq|SINE|Alu	23101	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
108883	chr18	79399701	79400600	+	0	NA	promoter-TSS (NM_001278672)	promoter-TSS (NM_001278672)	-124	NM_001278673	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
10590	chr1	67418821	67419430	+	0	NA	intron (NM_001018067, intron 6 of 7)	Tigger2a|DNA|TcMar-Tigger	11277	NM_001018067	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
231884	chr9	133022221	133023150	+	0	NA	Intergenic	Intergenic	2255	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
105808	chr18	2941201	2941400	+	0	NA	intron (NM_001375809, intron 4 of 19)	intron (NM_001375809, intron 4 of 19)	5323	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
171253	chr3	195851971	195852130	+	0	NA	intron (NR_134939, intron 1 of 1)	LTR16|LTR|ERVL	2178	NR_134940	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
2214	chr1	8794751	8794930	+	0	NA	intron (NM_012102, intron 1 of 23)	intron (NM_012102, intron 1 of 23)	22800	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
174012	chr4	26384451	26385000	+	0	NA	intron (NM_203284, intron 2 of 11)	MIR|SINE|MIR	41585	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
178952	chr4	159106971	159107730	+	0	NA	intron (NM_001351724, intron 1 of 30)	intron (NM_001351724, intron 1 of 30)	3299	NM_001351724	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
45190	chr11	117329851	117330150	+	0	NA	intron (NM_014956, intron 1 of 32)	MIRb|SINE|MIR	2146	NM_014956	22897		NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
74458	chr15	59687221	59688200	+	0	NA	intron (NM_001368061, intron 1 of 7)	intron (NM_001368061, intron 1 of 7)	1216	NM_001320675	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
46971	chr11	134839621	134839880	+	0	NA	Intergenic	L1MA9|LINE|L1	103805	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
163611	chr3	51995451	51997100	+	0	NA	promoter-TSS (NM_000992)	promoter-TSS (NM_000992)	-380	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
111205	chr19	3471521	3472330	+	0	NA	Intergenic	MIR|SINE|MIR	8600	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
13152	chr1	111720701	111721100	+	0	NA	Intergenic	L2c|LINE|L2	18495	NM_019099	55924		NM_019099	ENSG00000197852	INKA2	C1orf183|FAM212B	inka box actin regulator 2	protein-coding
237380	chrX	119426851	119427530	+	0	NA	intron (NM_145305, intron 3 of 4)	intron (NM_145305, intron 3 of 4)	27854	NM_145305	203427		NM_145305	ENSG00000077713	SLC25A43	-	solute carrier family 25 member 43	protein-coding
100631	chr17	63612151	63612600	+	0	NA	Intergenic	Intergenic	-10042	NM_001330431	4215		NM_002401	ENSG00000198909	MAP3K3	MAPKKK3|MEKK3	mitogen-activated protein kinase kinase kinase 3	protein-coding
238814	chrX	154407471	154408000	+	0	NA	intron (NM_001009934, intron 1 of 7)	AluSc|SINE|Alu	1519	NM_001303620	1774		NM_006730	ENSG00000013563	DNASE1L1	DNAS1L1|DNASEX|DNL1L|G4.8|XIB	deoxyribonuclease 1 like 1	protein-coding
10565	chr1	67214101	67214580	+	0	NA	intron (NM_144701, intron 6 of 10)	MIRb|SINE|MIR	47886	NM_144701	149233		NM_144701	ENSG00000162594	IL23R	PSORS7	interleukin 23 receptor	protein-coding
101813	chr17	73431821	73432080	+	0	NA	intron (NM_001144952, intron 10 of 44)	intron (NM_001144952, intron 10 of 44)	-81733	NR_135635	101928251		NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA
232408	chr9	136052971	136053130	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	42239	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
223006	chr8	143277621	143277880	+	0	NA	TTS (NM_138465)	TTS (NM_138465)	3950	NR_120683	100507316		NR_120682	ENSG00000253716	MINCR	LINC01604	MYC-induced long non-coding RNA	ncRNA
46302	chr11	124893151	124893250	+	0	NA	intron (NM_019055, intron 10 of 17)	intron (NM_019055, intron 10 of 17)	4665	NM_019055	54538		NM_019055	ENSG00000154133	ROBO4	AOVD3|ECSM4|MRB	roundabout guidance receptor 4	protein-coding
89993	chr16	89869901	89870300	+	0	NA	exon (NM_032451, exon 15 of 15)	exon (NM_032451, exon 15 of 15)	-3492	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
107932	chr18	57802071	57802430	+	0	NA	intron (NM_001374385, intron 1 of 27)	CpG	1065	NM_005603	5205		NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
182395	chr5	61305021	61305280	+	0	NA	Intergenic	Intergenic	-27108	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
50297	chr12	46387721	46388350	+	0	NA	intron (NR_125381, intron 2 of 2)	MIR|SINE|MIR	3928	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
89822	chr16	89570801	89571730	+	0	NA	Intergenic	CpG	-4493	NM_014427	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
161302	chr3	39384101	39384850	+	0	NA	intron (NM_001354798, intron 1 of 5)	CpG	1105	NM_017875	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
173381	chr4	7941021	7941530	+	0	NA	TTS (NM_203423)	TTS (NM_203423)	-1349	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
172228	chr4	1329021	1329880	+	0	NA	intron (NM_005882, intron 4 of 7)	intron (NM_005882, intron 4 of 7)	-17758	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
159630	chr3	15294251	15294550	+	0	NA	intron (NM_004844, intron 3 of 8)	MIRb|SINE|MIR	38186	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
195374	chr6	36686821	36687080	+	0	NA	3' UTR (NM_000389, exon 3 of 3)	3' UTR (NM_000389, exon 3 of 3)	8236	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
58051	chr12	124479971	124481330	+	0	NA	intron (NM_001077261, intron 5 of 47)	intron (NM_001077261, intron 5 of 47)	86962	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
126375	chr2	27488271	27488430	+	0	NA	intron (NM_015662, intron 1 of 47)	AluSq2|SINE|Alu	1393	NM_015662	26160		NM_015662	ENSG00000138002	IFT172	BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim	intraflagellar transport 172	protein-coding
227445	chr9	90226671	90227150	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-185411	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
132139	chr2	101720321	101720580	+	0	NA	intron (NM_001384572, intron 1 of 29)	MIR3|SINE|MIR	22185	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
180093	chr5	1150151	1150450	+	0	NA	Intergenic	Intergenic	28305	NR_109911	101928857		NR_109911	ENSG00000249201	TERLR1	CTD-3080P12.3	TERT regulating lncRNA 1	ncRNA
202137	chr6	155050221	155050700	+	0	NA	intron (NM_001384546, intron 1 of 26)	intron (NM_001384546, intron 1 of 26)	36696	NM_001384546	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
126840	chr2	31318601	31319150	+	0	NA	Intergenic	Intergenic	84723	NM_014600	30845		NM_014600	ENSG00000013016	EHD3	PAST3	EH domain containing 3	protein-coding
65245	chr14	49895271	49895700	+	0	NA	3' UTR (NM_001663, exon 2 of 2)	3' UTR (NM_001663, exon 2 of 2)	2403	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
208515	chr7	70060321	70060580	+	0	NA	intron (NM_001127232, intron 2 of 4)	MER5A|DNA|hAT-Charlie	461975	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
112422	chr19	6243751	6244250	+	0	NA	intron (NM_005934, intron 3 of 11)	AluY|SINE|Alu	35975	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
9154	chr1	45523501	45524130	+	0	NA	promoter-TSS (NM_001202431)	promoter-TSS (NM_001202431)	-925	NM_001202431	5052		NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
148095	chr20	63312801	63313000	+	0	NA	exon (NM_020882, exon 16 of 36)	exon (NM_020882, exon 16 of 36)	19714	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
189885	chr5	177327451	177328430	+	0	NA	Intergenic	L2a|LINE|L2	-16042	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
44425	chr11	104334151	104334250	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-170053	NM_025208	80310		NM_025208	ENSG00000170962	PDGFD	IEGF|MSTP036|SCDGF-B|SCDGFB	platelet derived growth factor D	protein-coding
57724	chr12	122877851	122879650	+	0	NA	intron (NM_024667, intron 1 of 3)	AluSz|SINE|Alu	17374	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
53526	chr12	66964321	66965380	+	0	NA	intron (NM_001379351, intron 1 of 22)	MLT1B|LTR|ERVL-MaLR	104488	NM_001379351	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
46748	chr11	129278951	129280630	+	0	NA	promoter-TSS (NM_001378025)	promoter-TSS (NM_001378025)	-272	NM_001378025	9743		NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
102705	chr17	76151671	76152450	+	0	NA	intron (NR_040017, intron 6 of 7)	intron (NR_040017, intron 6 of 7)	-10815	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
66659	chr14	63885171	63885730	+	0	NA	intron (NM_015180, intron 1 of 114)	L1MEc|LINE|L1	32446	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
237234	chrX	109782771	109783150	+	0	NA	Intergenic	Intergenic	-49568	NM_022977	2182		NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68|XLID63	acyl-CoA synthetase long chain family member 4	protein-coding
149631	chr21	33445071	33445700	+	0	NA	intron (NR_040016, intron 7 of 8)	intron (NR_040016, intron 7 of 8)	34589	NM_006134	757		NM_006134	ENSG00000142188	TMEM50B	C21orf4|HCVP7TP3	transmembrane protein 50B	protein-coding
201585	chr6	149338151	149338450	+	0	NA	intron (NM_015093, intron 2 of 8)	MER46C|DNA|TcMar-Tigger	20000	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
62393	chr13	99274201	99274400	+	0	NA	intron (NR_026644, intron 4 of 8)	L1ME3A|LINE|L1	-15872	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
44373	chr11	102495171	102495830	+	0	NA	intron (NR_135076, intron 2 of 2)	MamRep1527|LTR|LTR	28245	NR_135076	102723838		NR_135076	ENSG00000255482	LOC102723838	-	uncharacterized LOC102723838	ncRNA
221474	chr8	124480251	124480950	+	0	NA	intron (NM_007218, intron 1 of 1)	MER21B|LTR|ERVL	5720	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
235946	chrX	53284551	53285030	+	0	NA	intron (NM_001111125, intron 2 of 14)	intron (NM_001111125, intron 2 of 14)	-3206	NM_001243197	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
30620	chr10	80234601	80234900	+	0	NA	Intergenic	MIRb|SINE|MIR	-13008	NR_136612	100130698		NR_136612		LOC100130698	-	uncharacterized LOC100130698	ncRNA
98635	chr17	47810151	47811430	+	0	NA	exon (NM_145798, exon 17 of 23)	exon (NM_145798, exon 17 of 23)	11004	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
236071	chrX	56696171	56696400	+	0	NA	Intergenic	L1HS|LINE|L1	-32958	NM_001348129	550643		NM_001348129	ENSG00000204272	NBDY	LINC01420|NoBody	negative regulator of P-body association	protein-coding
160304	chr3	27468471	27468730	+	0	NA	intron (NR_135544, intron 1 of 24)	MIRb|SINE|MIR	-11822	NM_001258380	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
99808	chr17	51430751	51430850	+	0	NA	Intergenic	Intergenic	-4627	NR_146897	105371828		NR_146897	ENSG00000267452	LINC02073	-	long intergenic non-protein coding RNA 2073	ncRNA
213510	chr7	139067671	139067830	+	0	NA	intron (NM_020119, intron 7 of 12)	MER34|LTR|ERV1	-23593	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
103011	chr17	76869521	76870230	+	0	NA	intron (NM_144677, intron 1 of 16)	CpG	1471	NM_144677	146664		NM_144677	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B	protein-coding
234930	chrX	37847071	37848180	+	0	NA	promoter-TSS (NM_006520)	promoter-TSS (NM_006520)	-54	NM_006520	6990		NM_006520	ENSG00000165169	DYNLT3	RP3|TCTE1L|TCTEX1L	dynein light chain Tctex-type 3	protein-coding
24853	chr10	484471	485380	+	0	NA	intron (NM_014974, intron 2 of 36)	CpG	-143639	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
160031	chr3	18426871	18427330	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	-1761	NM_001195470	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
30737	chr10	84156601	84157200	+	0	NA	Intergenic	Intergenic	15176	NR_134505	642934		NR_134505	ENSG00000285972	CERNA2	HOST2|lncRNA-HOST2	competing endogenous lncRNA 2 for microRNA let-7b	ncRNA
5644	chr1	26277451	26277550	+	0	NA	3' UTR (NM_022778, exon 14 of 14)	3' UTR (NM_022778, exon 14 of 14)	-2586	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
16505	chr1	154876301	154876500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6119	NM_002249	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
109721	chr19	1079611	1080380	+	0	NA	exon (NM_001258328, exon 13 of 23)	exon (NM_001258328, exon 13 of 23)	3361	NM_001282334	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
40362	chr11	63979201	63979600	+	0	NA	Intergenic	Intergenic	4780	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
131357	chr2	96174201	96175100	+	0	NA	Intergenic	Intergenic	-29210	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
201359	chr6	144667271	144667430	+	0	NA	intron (NM_001375323, intron 1 of 24)	AluSx|SINE|Alu	84202	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
216023	chr8	9137471	9137830	+	0	NA	3' UTR (NM_024607, exon 2 of 2).2	3' UTR (NM_024607, exon 2 of 2).2	13008	NM_024607	79660		NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
88682	chr16	85744371	85744530	+	0	NA	intron (NR_161452, intron 1 of 4)	intron (NR_161452, intron 1 of 4)	-2750	NR_031731	100302261		NR_031731	ENSG00000283416	MIR1910	MIRN1910|hsa-mir-1910|mir-1910	microRNA 1910	ncRNA
99101	chr17	49132371	49133080	+	0	NA	promoter-TSS (NM_001159387)	promoter-TSS (NM_001159387)	-44	NM_001159387	124872		NM_153446	ENSG00000167080	B4GALNT2	B4GALT|GALGT2	beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood group)	protein-coding
154432	chr22	35348021	35348550	+	0	NA	TTS (NM_005488)	TTS (NM_005488)	-11486	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
94164	chr17	28373151	28373250	+	0	NA	intron (NM_015077, intron 1 of 8)	intron (NM_015077, intron 1 of 8)	1506	NM_015077	23098		NM_015077	ENSG00000004139	SARM1	HsTIR|MyD88-5|SAMD2|SARM|hSARM1	sterile alpha and TIR motif containing 1	protein-coding
158076	chr22	49966901	49967200	+	0	NA	Intergenic	Intergenic	4184	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
220472	chr8	100441801	100442000	+	0	NA	Intergenic	(CTTC)n|Simple_repeat|Simple_repeat	59137	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
2174	chr1	8499051	8499350	+	0	NA	intron (NM_012102, intron 9 of 23)	intron (NM_012102, intron 9 of 23)	-4287	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
124364	chr19	58356121	58357180	+	0	NA	exon (NM_001207009, exon 2 of 2)	exon (NM_001207009, exon 2 of 2)	-3158	NM_130786	1		NM_130786	ENSG00000121410	A1BG	A1B|ABG|GAB|HYST2477	alpha-1-B glycoprotein	protein-coding
80394	chr16	2559371	2559730	+	0	NA	intron (NM_031268, intron 2 of 10)	intron (NM_031268, intron 2 of 10)	21529	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
17154	chr1	156200021	156200280	+	0	NA	exon (NM_001377388, exon 3 of 5)	exon (NM_001377388, exon 3 of 5)	6046	NM_001286184	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
188147	chr5	150409471	150410200	+	0	NA	intron (NM_001025158, intron 1 of 5)	MLT1A1|LTR|ERVL-MaLR	2921	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
225538	chr9	35809951	35810450	+	0	NA	TTS (NM_001378923)	TTS (NM_001378923)	2062	NM_001366760	26206		NM_012436	ENSG00000137098	SPAG8	BS-84|CILD28|CT142|HSD-1|SMP1|SPAG3|hSMP-1	sperm associated antigen 8	protein-coding
172110	chr4	1133151	1133450	+	0	NA	TTS (NR_134676)	TTS (NR_134676)	-10136	NR_033768	100379220		NR_033768	ENSG00000293496	TMED11P	p24a1|p24alpha1	transmembrane p24 trafficking protein 11, pseudogene	pseudo
127205	chr2	38581451	38582200	+	0	NA	intron (NM_138394, intron 6 of 12)	intron (NM_138394, intron 6 of 12)	21103	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
49074	chr12	14422521	14422980	+	0	NA	intron (NM_181352, intron 1 of 14)	L1MB8|LINE|L1	37469	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
211445	chr7	105076821	105077280	+	0	NA	exon (NM_018682, exon 9 of 26)	exon (NM_018682, exon 9 of 26)	62845	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
95424	chr17	36103051	36104000	+	0	NA	promoter-TSS (NM_001291470)	promoter-TSS (NM_001291470)	-148	NR_111969	388372		NM_207007		CCL4L1	AT744.2|CCL4L|LAG-1|LAG1|MIP-1-beta|SCYA4L|SCYA4L1|SCYA4L2	C-C motif chemokine ligand 4 like 1	protein-coding
218648	chr8	57205971	57206130	+	0	NA	Intergenic	MER50|LTR|ERV1	-12226	NR_038235	100507651		NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
180377	chr5	7856951	7857250	+	0	NA	Intergenic	Intergenic	-5967	NM_001089584	134121		NM_001089584	ENSG00000215217	CFAP90	C5orf49	cilia and flagella associated protein 90	protein-coding
93945	chr17	21321771	21322150	+	0	NA	Intergenic	Intergenic	33924	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
213767	chr7	140653351	140653930	+	0	NA	Intergenic	Intergenic	-12180	NM_001318053	27147		NM_015689	ENSG00000146966	DENND2A	FAM31D|KIAA1277	DENN domain containing 2A	protein-coding
66896	chr14	65210151	65210650	+	0	NA	Intergenic	LOR1b|LTR|ERV1	11947	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
132248	chr2	102436371	102436530	+	0	NA	intron (NM_003853, intron 5 of 11)	intron (NM_003853, intron 5 of 11)	4161	NR_039930	100616157		NR_039930	ENSG00000264764	MIR4772	mir-4772	microRNA 4772	ncRNA
230882	chr9	129202671	129204230	+	0	NA	Intergenic	L2a|LINE|L2	-25189	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
140721	chr2	234427751	234428300	+	0	NA	Intergenic	Intergenic	26570	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
147349	chr20	58286821	58287080	+	0	NA	intron (NR_003505, intron 2 of 16)	intron (NR_003505, intron 2 of 16)	22489	NR_003505	55370		NM_018498		PPP4R1L	C20orf192|PPP4R1P1|PRO1085	protein phosphatase 4 regulatory subunit 1 like (pseudogene)	pseudo
150720	chr21	43737701	43738080	+	0	NA	intron (NM_003681, intron 2 of 10)	intron (NM_003681, intron 2 of 10)	-3596	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
104382	chr17	81030071	81030250	+	0	NA	non-coding (NR_026857, exon 2 of 2)	non-coding (NR_026857, exon 2 of 2)	4559	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
220565	chr8	100723901	100724330	+	0	NA	Intergenic	Intergenic	-2027	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
217474	chr8	28880551	28881050	+	0	NA	intron (NM_001363038, intron 1 of 16)	SVA_E|Retroposon|SVA	9115	NM_001172562	55756		NM_018250	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
116344	chr19	17859271	17860430	+	0	NA	promoter-TSS (NM_000980)	promoter-TSS (NM_000980)	-60	NM_000980	6142		NM_000980	ENSG00000105640	RPL18A	L18A|eL20	ribosomal protein L18a	protein-coding
184879	chr5	112594071	112594430	+	0	NA	Intergenic	Intergenic	-34186	NR_104672	102467214		NR_104672	ENSG00000250358	LINC02200	-	long intergenic non-protein coding RNA 2200	ncRNA
53722	chr12	68622351	68623530	+	0	NA	intron (NM_001251917, intron 1 of 5)	SVA_A|Retroposon|SVA	4435	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
222680	chr8	141243971	141244130	+	0	NA	intron (NM_001286646, intron 2 of 8)	Tigger2a|DNA|TcMar-Tigger	-10517	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
147043	chr20	53652151	53653730	+	0	NA	Intergenic	Intergenic	44586	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
217102	chr8	24891771	24892080	+	0	NA	Intergenic	Intergenic	-21836	NM_005382	4741		NM_005382	ENSG00000104722	NEFM	NEF3|NF-M|NFM	neurofilament medium chain	protein-coding
178819	chr4	153531851	153532380	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	65755	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
122186	chr19	48926871	48927430	+	0	NA	Intergenic	LTR47B4|LTR|ERVL	-6549	NM_014475	27294		NM_014475	ENSG00000104808	DHDH	2DD|HUM2DD	dihydrodiol dehydrogenase	protein-coding
180520	chr5	14414901	14416030	+	0	NA	intron (NR_134469, intron 33 of 56)	intron (NR_134469, intron 33 of 56)	-48518	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
197613	chr6	82251551	82252250	+	0	NA	Intergenic	MIR|SINE|MIR	-4156	NM_015525	25998		NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI	inhibitor of Bruton tyrosine kinase	protein-coding
13911	chr1	119987101	119987330	+	0	NA	intron (NM_001200001, intron 4 of 21)	intron (NM_001200001, intron 4 of 21)	82447	NM_024408	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
202028	chr6	152980351	152980650	+	0	NA	intron (NM_001142522, intron 1 of 4)	intron (NM_001142522, intron 1 of 4)	2541	NM_012177	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
199484	chr6	118632121	118632380	+	0	NA	intron (NM_206921, intron 2 of 5)	AluY|SINE|Alu	19341	NM_206921	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
168442	chr3	142828701	142828980	+	0	NA	intron (NM_013363, intron 6 of 8)	intron (NM_013363, intron 6 of 8)	60243	NM_013363	26577		NM_013363	ENSG00000163710	PCOLCE2	PCPE2	procollagen C-endopeptidase enhancer 2	protein-coding
85005	chr16	31489851	31490550	+	0	NA	exon (NM_003041, exon 13 of 14)	exon (NM_003041, exon 13 of 14)	7077	NR_130783	6524		NM_003041	ENSG00000140675	SLC5A2	SGLT2	solute carrier family 5 member 2	protein-coding
112907	chr19	7641401	7642030	+	0	NA	non-coding (NR_073560, exon 7 of 19)	non-coding (NR_073560, exon 7 of 19)	4605	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
74545	chr15	60516501	60516700	+	0	NA	intron (NM_134260, intron 4 of 11)	intron (NM_134260, intron 4 of 11)	37422	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
92113	chr17	7586551	7587530	+	0	NA	intron (NM_004870, intron 5 of 6)	intron (NM_004870, intron 5 of 6)	-2948	NR_136402	100996842		NM_001322800	ENSG00000233223	MPDU1-AS1	-	MPDU1 antisense RNA 1	ncRNA
78091	chr15	90241321	90241580	+	0	NA	exon (NM_001322811, exon 5 of 5)	exon (NM_001322811, exon 5 of 5)	7241	NM_001322811	390637		NM_001013657	ENSG00000183208	GDPGP1	C15orf58|VTC2	GDP-D-glucose phosphorylase 1	protein-coding
222569	chr8	140622101	140622630	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	13268	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
185440	chr5	131225071	131225300	+	0	NA	Intergenic	Intergenic	-38868	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
171889	chr4	787801	788230	+	0	NA	intron (NM_006651, intron 3 of 3)	intron (NM_006651, intron 3 of 3)	-6167	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
34293	chr10	131957801	131958200	+	0	NA	non-coding (NR_033191, exon 10 of 10)	non-coding (NR_033191, exon 10 of 10)	24013	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
66351	chr14	61454301	61455580	+	0	NA	intron (NM_006255, intron 7 of 13)	L3|LINE|CR1	115254	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
238257	chrX	148259951	148260250	+	0	NA	Intergenic	L1PA7|LINE|L1	-240517	NM_001169124	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
108259	chr18	63234621	63235280	+	0	NA	intron (NM_000633, intron 2 of 2)	L1ME3C|LINE|L1	84819	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
96781	chr17	41789351	41789880	+	0	NA	Intergenic	Intergenic	-2847	NM_001352776	3728		NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PG|PKGB	junction plakoglobin	protein-coding
60053	chr13	32941371	32941530	+	0	NA	Intergenic	L2c|LINE|L2	-29798	NR_047020	100874167		NR_047020		LINC00423	-	long intergenic non-protein coding RNA 423	ncRNA
228493	chr9	100083901	100084100	+	0	NA	intron (NM_015051, intron 1 of 11)	(ACAG)n|Simple_repeat|Simple_repeat	15000	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
70257	chr14	101705421	101706550	+	0	NA	Intergenic	CpG	-24452	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
190000	chr5	177470101	177470630	+	0	NA	intron (NM_004395, intron 1 of 13)	intron (NM_004395, intron 1 of 13)	2505	NM_080881	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
26996	chr10	26796471	26797230	+	0	NA	intron (NR_145410, intron 2 of 11)	MER1B|DNA|hAT-Charlie	64108	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
6117	chr1	27344751	27345050	+	0	NA	intron (NM_032872, intron 1 of 14)	intron (NM_032872, intron 1 of 14)	2878	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
112657	chr19	6863501	6864250	+	0	NA	Intergenic	Intergenic	-23704	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
201053	chr6	142318801	142319000	+	0	NA	intron (NM_001032394, intron 2 of 24)	intron (NM_001032394, intron 2 of 24)	16893	NM_198569	57211		NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
216329	chr8	13132771	13133800	+	0	NA	promoter-TSS (NM_001348084)	promoter-TSS (NM_001348084)	4	NM_001348084	10395		NM_006094	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
205176	chr7	7569161	7570030	+	0	NA	intron (NM_019005, intron 3 of 12)	L2b|LINE|L2	1569	NM_001370078	54468		NM_019005	ENSG00000164654	MIOS	MIO|Sea4|Yulink	meiosis regulator for oocyte development	protein-coding
82746	chr16	21410221	21410680	+	0	NA	intron (NM_130464, intron 5 of 12)	AluSq2|SINE|Alu	14928	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
134914	chr2	150023151	150023450	+	0	NA	Intergenic	Intergenic	-164109	NR_145421	150596		NM_153041	ENSG00000162947	LINC01931	-	long intergenic non-protein coding RNA 1931	ncRNA
162216	chr3	47036571	47036730	+	0	NA	intron (NR_146158, intron 19 of 21)	AluSx|SINE|Alu	25108	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
105670	chr18	2627821	2628080	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	27445	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
138054	chr2	201448701	201449650	+	0	NA	intron (NM_015049, intron 1 of 15)	intron (NM_015049, intron 1 of 15)	2283	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
203300	chr6	170023301	170023780	+	0	NA	Intergenic	CpG	60917	NR_027434	100131532		NR_027434		LOC100131532	-	uncharacterized LOC100131532	ncRNA
177239	chr4	108624251	108624750	+	0	NA	intron (NM_033625, intron 4 of 5)	intron (NM_033625, intron 4 of 5)	3871	NM_001319234	6164		NM_000995	ENSG00000109475	RPL34	L34|eL34	ribosomal protein L34	protein-coding
210151	chr7	98243301	98243500	+	0	NA	intron (NM_015395, intron 6 of 25)	intron (NM_015395, intron 6 of 25)	8832	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
113534	chr19	10142351	10143250	+	0	NA	intron (NM_001318730, intron 28 of 39)	intron (NM_001318730, intron 28 of 39)	-22901	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
197714	chr6	85923071	85923230	+	0	NA	Intergenic	LTR41|LTR|ERVL	-244417	NR_003038	387066		NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG	small nucleolar RNA host gene 5	ncRNA
220104	chr8	94473171	94473580	+	0	NA	intron (NM_012415, intron 1 of 14)	MIR|SINE|MIR	1740	NM_001205262	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
137128	chr2	191024351	191024650	+	0	NA	intron (NR_136318, intron 1 of 2)	intron (NR_136318, intron 1 of 2)	2974	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
54498	chr12	92090871	92091330	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	50613	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
21513	chr1	205772671	205773130	+	0	NA	intron (NM_001135664, intron 1 of 4)	intron (NM_001135664, intron 1 of 4)	2582	NM_001135663	8934		NM_003929	ENSG00000117280	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
97589	chr17	44107421	44107680	+	0	NA	intron (NM_001382393, intron 3 of 26)	AluSg|SINE|Alu	-8362	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
166691	chr3	120553671	120553830	+	0	NA	Intergenic	Intergenic	-42586	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
190281	chr5	179555101	179555500	+	0	NA	intron (NM_025158, intron 1 of 17)	intron (NM_025158, intron 1 of 17)	-4431	NM_001040452	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
204983	chr7	6406471	6407100	+	0	NA	Intergenic	AluJo|SINE|Alu	32258	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
196469	chr6	43536401	43536800	+	0	NA	intron (NR_144392, intron 21 of 32)	AluSg|SINE|Alu	19511	NM_203290	9533		NM_004875	ENSG00000171453	POLR1C	AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3	RNA polymerase I and III subunit C	protein-coding
218960	chr8	61120851	61121200	+	0	NA	Intergenic	L1PA3|LINE|L1	-153277	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
54105	chr12	76123401	76123830	+	0	NA	Intergenic	L2c|LINE|L2	-38930	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
64953	chr14	35932471	35933050	+	0	NA	Intergenic	Intergenic	106422	NM_032352	84312		NM_032352	ENSG00000100916	BRMS1L	BRMS1|p40	BRMS1 like transcriptional repressor	protein-coding
96823	chr17	41952621	41952880	+	0	NA	intron (NM_001350319, intron 9 of 10)	AluJo|SINE|Alu	-14045	NM_033133	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
6022	chr1	27100901	27101100	+	0	NA	intron (NR_046474, intron 10 of 10)	intron (NR_046474, intron 10 of 10)	54125	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
53214	chr12	62278451	62278950	+	0	NA	intron (NM_001351164, intron 1 of 21)	MER47A|DNA|TcMar-Tigger	18296	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
96992	chr17	42280071	42280230	+	0	NA	Intergenic	Intergenic	-3759	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
204212	chr7	2517671	2518250	+	0	NA	promoter-TSS (NM_002304)	promoter-TSS (NM_002304)	97	NM_002304	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
233813	chrX	1470341	1471000	+	0	NA	intron (NM_178129, intron 1 of 1)	L1MB5|LINE|L1	-16908	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
194289	chr6	32666341	32667280	+	0	NA	promoter-TSS (NM_002123)	promoter-TSS (NM_002123)	-153	NM_002123	3119		NM_002123	ENSG00000179344	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
192514	chr6	25017721	25018300	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	24278	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
106873	chr18	24170451	24170550	+	0	NA	intron (NM_080597, intron 23 of 27)	intron (NM_080597, intron 23 of 27)	31016	NM_138644	26256		NM_012189	ENSG00000154040	CABYR	CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2	calcium binding tyrosine phosphorylation regulated	protein-coding
184846	chr5	111531651	111532530	+	0	NA	intron (NR_040093, intron 1 of 6)	AluSx|SINE|Alu	-19493	NM_001308057	134429		NM_139164	ENSG00000164211	STARD4	-	StAR related lipid transfer domain containing 4	protein-coding
58447	chr12	132067501	132067700	+	0	NA	intron (NM_015409, intron 50 of 52)	intron (NM_015409, intron 50 of 52)	-16683	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
20352	chr1	197910301	197910930	+	0	NA	Intergenic	Intergenic	-1890	NM_001014434	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
105124	chr17	82221771	82222530	+	0	NA	Intergenic	CpG	-6256	NM_001042422	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
44863	chr11	114179171	114179750	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	-78346	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
43613	chr11	83179851	83180580	+	0	NA	intron (NM_015885, intron 11 of 15)	AluSg|SINE|Alu	7269	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
91504	chr17	4941801	4942930	+	0	NA	exon (NM_001320358, exon 4 of 10)	exon (NM_001320358, exon 4 of 10)	2097	NM_001370307	26001		NM_015528	ENSG00000108523	RNF167	5730408C10Rik|LP2254|RING105	ring finger protein 167	protein-coding
103884	chr17	79789471	79790380	+	0	NA	Intergenic	CpG	7152	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
147376	chr20	58481551	58481800	+	0	NA	intron (NR_130908, intron 1 of 1)	intron (NR_130908, intron 1 of 1)	-33704	NR_034147	149773		NR_034147	ENSG00000231290	APCDD1L-DT	APCDD1L-AS1	APCDD1L divergent transcript	ncRNA
164333	chr3	57911071	57911300	+	0	NA	intron (NR_165328, intron 17 of 22)	intron (NR_165328, intron 17 of 22)	21183	NM_001377928	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
172363	chr4	1743801	1744200	+	0	NA	intron (NM_006342, intron 13 of 15)	intron (NM_006342, intron 13 of 15)	22479	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
138440	chr2	206083451	206084500	+	0	NA	intron (NM_017759, intron 1 of 10)	intron (NM_017759, intron 1 of 10)	2199	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
170065	chr3	182895051	182895550	+	0	NA	intron (NM_014616, intron 25 of 29)	intron (NM_014616, intron 25 of 29)	85238	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
53655	chr12	68363371	68363980	+	0	NA	Intergenic	L2a|LINE|L2	-31261	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
84924	chr16	31233551	31234050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-16665	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
15946	chr1	151830451	151831500	+	0	NA	intron (NM_005060, intron 1 of 10)	intron (NM_005060, intron 1 of 10)	827	NM_005060	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
214159	chr7	144726951	144727050	+	0	NA	intron (NR_146934, intron 2 of 6)	LTR13|LTR|ERVK	11898	NR_146936	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
14979	chr1	148032901	148033600	+	0	NA	Intergenic	Intergenic	5666	NR_004426	26864		NR_004426	ENSG00000206585	RNVU1-7	RNU1-26P|RNU1-6|RNU1-6P|RNU1-9|RNU1-9P|RNVU1-9|vU1.7|vU1.9	RNA, variant U1 small nuclear 7	snRNA
111182	chr19	3371051	3371380	+	0	NA	intron (NM_001245002, intron 1 of 10)	intron (NM_001245002, intron 1 of 10)	4632	NM_001245004	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
230750	chr9	128890121	128890380	+	0	NA	intron (NM_019594, intron 2 of 3)	intron (NM_019594, intron 2 of 3)	-7727	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
61088	chr13	48408671	48409330	+	0	NA	intron (NM_000321, intron 17 of 26)	intron (NM_000321, intron 17 of 26)	4113	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
79889	chr16	1545321	1545800	+	0	NA	intron (NM_024600, intron 2 of 2)	intron (NM_024600, intron 2 of 2)	11894	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
60786	chr13	45310871	45311880	+	0	NA	Intergenic	Intergenic	25072	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
168711	chr3	150721201	150722150	+	0	NA	Intergenic	Intergenic	17310	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
226414	chr9	70459371	70459530	+	0	NA	Intergenic	Intergenic	-44793	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
39516	chr11	61072271	61072430	+	0	NA	Intergenic	Intergenic	-21613	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
185054	chr5	115962301	115963080	+	0	NA	exon (NM_173800, exon 1 of 20)	exon (NM_173800, exon 1 of 20)	215	NM_173800	206338		NM_173800	ENSG00000172901	LVRN	APQ|AQPEP|TAQPEP	laeverin	protein-coding
128385	chr2	55042801	55043330	+	0	NA	intron (NM_001321904, intron 2 of 9)	intron (NM_001321904, intron 2 of 9)	4261	NM_001321863	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133585	chr2	121652121	121652380	+	0	NA	TTS (NR_037856)	TTS (NR_037856)	2261	NR_037856	254128		NR_037856	ENSG00000236859	NIFK-AS1	-	NIFK antisense RNA 1	ncRNA
158049	chr22	49942701	49943400	+	0	NA	Intergenic	Intergenic	-17722	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
18030	chr1	160579101	160579750	+	0	NA	promoter-TSS (NM_001184879)	promoter-TSS (NM_001184879)	71	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
90356	chr17	1206251	1207350	+	0	NA	intron (NM_001322841, intron 1 of 22)	AluJo|SINE|Alu	-19528	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
22104	chr1	211643501	211644100	+	0	NA	intron (NR_131925, intron 2 of 2)	intron (NR_131925, intron 2 of 2)	3992	NR_131925	105748977		NR_131925	ENSG00000227764	NTRAS	LINC01693	non-coding transcript regulating alternative splicing	ncRNA
121315	chr19	46752851	46753150	+	0	NA	intron (NM_001039885, intron 3 of 3)	AluSc|SINE|Alu	-6550	NM_013403	29888		NM_013403	ENSG00000090372	STRN4	PPP2R6C|ZIN|zinedin	striatin 4	protein-coding
173702	chr4	15704301	15704700	+	0	NA	intron (NM_004334, intron 1 of 8)	intron (NM_004334, intron 1 of 8)	1435	NM_004334	683		NM_004334	ENSG00000109743	BST1	CD157|cADPR2	bone marrow stromal cell antigen 1	protein-coding
161781	chr3	45020401	45021000	+	0	NA	Intergenic	Intergenic	-5603	NM_003278	7123		NM_003278	ENSG00000163815	CLEC3B	MCDR4|TN|TNA	C-type lectin domain family 3 member B	protein-coding
118112	chr19	34501371	34501980	+	0	NA	3' UTR (NM_001080436, exon 8 of 8)	3' UTR (NM_001080436, exon 8 of 8)	19917	NM_001080436	126374		NM_001080436	ENSG00000142279	WTIP	-	WT1 interacting protein	protein-coding
158192	chr22	50236901	50237730	+	0	NA	intron (NM_020461, intron 2 of 24)	intron (NM_020461, intron 2 of 24)	7708	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
175038	chr4	52751671	52751830	+	0	NA	promoter-TSS (NM_001242690)	promoter-TSS (NM_001242690)	-110	NM_024534	100288413		NM_024534	ENSG00000226887	ERVMER34-1	HEMO|envMER34	endogenous retrovirus group MER34 member 1, envelope	protein-coding
70777	chr14	103512021	103512280	+	0	NA	Intergenic	AluSg|SINE|Alu	10680	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
123862	chr19	55257801	55260280	+	0	NA	promoter-TSS (NM_014931)	promoter-TSS (NM_014931)	-23	NM_014931	22870		NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding
191561	chr6	11728921	11729550	+	0	NA	intron (NM_032744, intron 4 of 5)	intron (NM_032744, intron 4 of 5)	49568	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
224716	chr9	21503821	21504480	+	0	NA	intron (NR_152877, intron 1 of 3)	intron (NR_152877, intron 1 of 3)	8035	NR_029505	407035		NR_029505	ENSG00000199177	MIR31	MIRN31|hsa-mir-31|miR-31	microRNA 31	ncRNA
10079	chr1	58788221	58788480	+	0	NA	intron (NR_108106, intron 1 of 1)	MLT1I-int|LTR|ERVL-MaLR	3199	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
50464	chr12	47754901	47755130	+	0	NA	intron (NM_001098532, intron 1 of 26)	intron (NM_001098532, intron 1 of 26)	3383	NM_001098532	10411		NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
227769	chr9	93117301	93117500	+	0	NA	Intergenic	AluSg|SINE|Alu	16851	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
80024	chr16	1941151	1941530	+	0	NA	exon (NM_001382265, exon 2 of 3)	exon (NM_001382265, exon 2 of 3)	1859	NM_016332	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
11297	chr1	89271521	89273370	+	0	NA	intron (NM_052942, intron 1 of 11)	intron (NM_052942, intron 1 of 11)	415	NM_001134486	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
159937	chr3	17075351	17075750	+	0	NA	intron (NM_015184, intron 5 of 5)	Tigger1|DNA|TcMar-Tigger	142354	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
112878	chr19	7615001	7615600	+	0	NA	exon (NM_001080429, exon 14 of 19)	exon (NM_001080429, exon 14 of 19)	-2139	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
3762	chr1	16672351	16673500	+	0	NA	Intergenic	Intergenic	-5977	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
59686	chr13	29472371	29472630	+	0	NA	intron (NM_015233, intron 2 of 8)	intron (NM_015233, intron 2 of 8)	15250	NR_046378	100874107		NR_046378		MTUS2-AS1	-	MTUS2 antisense RNA 1	ncRNA
90198	chr17	414901	415100	+	0	NA	promoter-TSS (NR_136407)	promoter-TSS (NR_136407)	-977	NR_136407	105371430		NR_136407	ENSG00000241525	LOC105371430	-	uncharacterized LOC105371430	ncRNA
158227	chr22	50277151	50277630	+	0	NA	intron (NM_001376885, intron 33 of 36)	intron (NM_001376885, intron 33 of 36)	-7010	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
227835	chr9	93462721	93462980	+	0	NA	intron (NM_001286723, intron 1 of 9)	L1MB3|LINE|L1	-9249	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
84368	chr16	30238501	30239100	+	0	NA	intron (NM_001321892, intron 3 of 8)	AluSx|SINE|Alu	7055	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
158343	chr22	50455171	50456000	+	0	NA	intron (NM_002972, intron 31 of 40)	intron (NM_002972, intron 31 of 40)	19450	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
180871	chr5	33122751	33122850	+	0	NA	Intergenic	L1PA2|LINE|L1	-106935	NR_147008	105374716		NR_147008	ENSG00000251443	LINC02160	-	long intergenic non-protein coding RNA 2160	ncRNA
102936	chr17	76631751	76632230	+	0	NA	intron (NM_018414, intron 1 of 8)	intron (NM_018414, intron 1 of 8)	11767	NM_018414	55808		NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding
126430	chr2	27857551	27857650	+	0	NA	intron (NM_001287580, intron 3 of 8)	intron (NM_001287580, intron 3 of 8)	-31109	NM_001329112	9577		NM_004899	ENSG00000158019	BABAM2	BRCC4|BRCC45|BRE	BRISC and BRCA1 A complex member 2	protein-coding
205092	chr7	6706051	6707530	+	0	NA	5' UTR (NM_006956, exon 1 of 6)	5' UTR (NM_006956, exon 1 of 6)	157	NM_006956	7559		NM_006956	ENSG00000164631	ZNF12	GIOT-3|HZF11|KOX3|ZNF325	zinc finger protein 12	protein-coding
63710	chr14	21195301	21195900	+	0	NA	Intergenic	MER50B|LTR|ERV1	9903	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
131965	chr2	100060901	100061180	+	0	NA	intron (NM_001025108, intron 2 of 23)	L1MC3|LINE|L1	44543	NM_001025108	3899		NM_002285	ENSG00000144218	AFF3	KINS|LAF4|MLLT2-like	ALF transcription elongation factor 3	protein-coding
90891	chr17	2398051	2398350	+	0	NA	intron (NM_020310, intron 1 of 5)	intron (NM_020310, intron 1 of 5)	2860	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
90405	chr17	1309071	1309250	+	0	NA	Intergenic	Intergenic	29498	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
193981	chr6	31732501	31732700	+	0	NA	intron (NM_001287594, intron 5 of 6).5	AluSx1|SINE|Alu	-2337	NM_013974	23564		NM_013974	ENSG00000213722	DDAH2	DDAH|DDAHII|G6a|HEL-S-277|NG30	DDAH family member 2, ADMA-independent	protein-coding
145512	chr20	44011151	44011700	+	0	NA	intron (NM_032883, intron 4 of 9)	L2c|LINE|L2	65529	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
42814	chr11	72823771	72824000	+	0	NA	intron (NM_033388, intron 7 of 17)	intron (NM_033388, intron 7 of 17)	9474	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
87933	chr16	79334301	79334500	+	0	NA	Intergenic	L1ME3|LINE|L1	266337	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
77508	chr15	84657971	84659450	+	0	NA	promoter-TSS (NM_021077)	promoter-TSS (NM_021077)	-511	NM_021077	4828		NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
3435	chr1	15866751	15867050	+	0	NA	intron (NM_015001, intron 1 of 14)	intron (NM_015001, intron 1 of 14)	-18753	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
220	chr1	828771	829080	+	0	NA	intron (NR_047525, intron 1 of 4)	MER41D|LTR|ERV1	1127	NR_047525	643837		NR_015368	ENSG00000228794	LINC01128	-	long intergenic non-protein coding RNA 1128	ncRNA
144729	chr20	36577921	36578300	+	0	NA	intron (NM_001199535, intron 1 of 4)	MIR|SINE|MIR	3556	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
28416	chr10	47775701	47776100	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-12308	NM_001370185	102724488		NM_001370182	ENSG00000277758	SYT15B	-	synaptotagmin 15B	protein-coding
175974	chr4	81489521	81489780	+	0	NA	Intergenic	Intergenic	-17743	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
36146	chr11	3135271	3136040	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	29655	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
117426	chr19	19640101	19640300	+	0	NA	intron (NM_001288998, intron 6 of 19)	intron (NM_001288998, intron 6 of 19)	3457	NM_001288998	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
135147	chr2	157465521	157465880	+	0	NA	Intergenic	Intergenic	-21611	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
177167	chr4	108147951	108148780	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	18432	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
205149	chr7	7191201	7191400	+	0	NA	intron (NM_020156, intron 1 of 3)	L1MB3|LINE|L1	8756	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
46124	chr11	122989421	122990080	+	0	NA	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	-7916	NM_001098169	390259		NM_001098169	ENSG00000188909	BSX	BSX1	brain specific homeobox	protein-coding
186082	chr5	134103071	134104380	+	0	NA	Intergenic	Intergenic	-10956	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
57148	chr12	121242271	121242930	+	0	NA	TTS (NM_172214)	TTS (NM_172214)	31985	NM_001270486	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
105999	chr18	7894751	7894850	+	0	NA	intron (NM_002845, intron 3 of 30)	intron (NM_002845, intron 3 of 30)	-52075	NM_001378146	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
235997	chrX	54423271	54423430	+	0	NA	Intergenic	Intergenic	-17025	NM_001346790	90121		NM_058163	ENSG00000158526	TSR2	DBA14|DT1P1A10|WGG1	TSR2 ribosome maturation factor	protein-coding
198352	chr6	105272771	105272930	+	0	NA	TTS (NM_002726)	TTS (NM_002726)	-92836	NM_022361	64208		NM_022361	ENSG00000132429	POPDC3	LGMDR26|POP3|bA355M14.1	popeye domain containing 3	protein-coding
131851	chr2	98689251	98689550	+	0	NA	intron (NM_012214, intron 2 of 15)	Looper|DNA|PiggyBac	-25927	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
228215	chr9	97856751	97857250	+	0	NA	TTS (NM_004473)	TTS (NM_004473)	3774	NM_004473	2304		NM_004473	ENSG00000178919	FOXE1	BAMLAZ|FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2	forkhead box E1	protein-coding
42037	chr11	67439401	67442600	+	0	NA	intron (NM_001018070, intron 7 of 11)	intron (NM_001018070, intron 7 of 11)	2476	NM_020441	57175		NM_020441	ENSG00000172725	CORO1B	CORONIN-2	coronin 1B	protein-coding
51590	chr12	52662301	52662700	+	0	NA	Intergenic	MIRc|SINE|MIR	-10289	NM_000423	3849		NM_000423	ENSG00000172867	KRT2	CK-2e|K2e|KRT2A|KRT2E|KRTE	keratin 2	protein-coding
84677	chr16	30766201	30766400	+	0	NA	intron (NM_014771, intron 9 of 19)	intron (NM_014771, intron 9 of 19)	3978	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
150173	chr21	39187951	39188650	+	0	NA	3' UTR (NM_033656, exon 41 of 41)	3' UTR (NM_033656, exon 41 of 41)	-4786	NM_203433	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
113086	chr19	8265801	8266000	+	0	NA	Intergenic	AluJo|SINE|Alu	42458	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
57841	chr12	123251821	123252080	+	0	NA	intron (NM_001194995, intron 1 of 2)	MLT2A1|LTR|ERVL	16304	NM_001270434	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
78321	chr15	90954421	90955500	+	0	NA	promoter-TSS (NM_001017919)	promoter-TSS (NM_001017919)	84	NM_033544	91433		NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
1759	chr1	6017051	6017350	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	-9133	NM_172130	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
32650	chr10	103763571	103764350	+	0	NA	intron (NM_014631, intron 3 of 13)	LTR16A1|LTR|ERVL	17181	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
172069	chr4	1029571	1029730	+	0	NA	Intergenic	Intergenic	17186	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
115775	chr19	16350821	16351330	+	0	NA	Intergenic	AluSc|SINE|Alu	26249	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
51565	chr12	52585601	52586630	+	0	NA	exon (NM_001146225, exon 9 of 10)	exon (NM_001146225, exon 9 of 10)	-12272	NM_175053	121391		NM_175053	ENSG00000170484	KRT74	ADWH|ECTD7|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4	keratin 74	protein-coding
221285	chr8	122914121	122914600	+	0	NA	intron (NM_001362797, intron 3 of 4)	intron (NM_001362797, intron 3 of 4)	111412	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
164039	chr3	53279651	53279950	+	0	NA	Intergenic	MLT2B2|LTR|ERVL	-23686	NM_001258028	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
98412	chr17	46598521	46599230	+	0	NA	intron (NR_040116, intron 1 of 19).2	intron (NR_040116, intron 1 of 19).2	8141	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
224133	chr9	4739001	4739200	+	0	NA	intron (NM_001199853, intron 1 of 4)	intron (NM_001199853, intron 1 of 4)	2102	NM_001199852	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
64459	chr14	24240201	24241030	+	0	NA	exon (NM_001099274, exon 6 of 9)	exon (NM_001099274, exon 6 of 9)	2008	NM_001099274	26277		NM_012461	ENSG00000092330	TINF2	DKCA3|TIN2	TERF1 interacting nuclear factor 2	protein-coding
96766	chr17	41730351	41731050	+	0	NA	intron (NM_177977, intron 6 of 10)	intron (NM_177977, intron 6 of 10)	3943	NM_001367462	9001		NM_003949	ENSG00000173805	HAP1	HAP2|HIP5|HLP|hHLP1	huntingtin associated protein 1	protein-coding
115144	chr19	14392921	14394800	+	0	NA	intron (NM_001784, intron 4 of 17)	intron (NM_001784, intron 4 of 17)	12416	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
46625	chr11	128625951	128626250	+	0	NA	Intergenic	MIRb|SINE|MIR	-38542	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
136841	chr2	183123971	183125530	+	0	NA	intron (NM_138285, intron 1 of 8)	intron (NM_138285, intron 1 of 8)	307	NM_138285	129401		NM_138285	ENSG00000163002	NUP35	MP-44|MP44|NP44|NUP53	nucleoporin 35	protein-coding
21354	chr1	204802901	204803100	+	0	NA	Intergenic	Intergenic	-25652	NM_001378329	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
177006	chr4	105707171	105707400	+	0	NA	intron (NM_020395, intron 1 of 7)	intron (NM_020395, intron 1 of 7)	1404	NM_020395	57117		NM_020395	ENSG00000138785	INTS12	INT12|PHF22|SBBI22	integrator complex subunit 12	protein-coding
42944	chr11	73545351	73545470	+	0	NA	intron (NM_015159, intron 1 of 7)	L1MB8|LINE|L1	52702	NM_001286050	23201		NM_015159	ENSG00000054965	FAM168A	KIAA0280|TCRP1	family with sequence similarity 168 member A	protein-coding
178580	chr4	151144601	151144800	+	0	NA	intron (NM_001378121, intron 11 of 20)	intron (NM_001378121, intron 11 of 20)	30852	NM_001128924	152503		NM_001009555	ENSG00000109686	SH3D19	EBP|EVE1|Eve-1|Kryn|SH3P19	SH3 domain containing 19	protein-coding
38310	chr11	43880401	43881430	+	0	NA	promoter-TSS (NM_139178)	promoter-TSS (NM_139178)	84	NM_139178	221120		NM_139178	ENSG00000166199	ALKBH3	ABH3|DEPC-1|DEPC1|PCA1|hABH3	alkB homolog 3, alpha-ketoglutarate dependent dioxygenase	protein-coding
77192	chr15	80696421	80696680	+	0	NA	intron (NM_021214, intron 1 of 2)	intron (NM_021214, intron 1 of 2)	1240	NM_021214	58489		NM_021214	ENSG00000136379	ABHD17C	FAM108C1	abhydrolase domain containing 17C, depalmitoylase	protein-coding
363	chr1	1023651	1024730	+	0	NA	intron (NM_198576, intron 2 of 35)	intron (NM_198576, intron 2 of 35)	4070	NM_198576	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
145759	chr20	45306501	45306950	+	0	NA	promoter-TSS (NM_001281448)	promoter-TSS (NM_001281448)	-115	NM_014276	11317		NM_014276	ENSG00000124232	RBPJL	RBPL|RBPSUHL|SUHL	recombination signal binding protein for immunoglobulin kappa J region like	protein-coding
196927	chr6	52399601	52400150	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	-20467	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
184942	chr5	112993721	112994580	+	0	NA	intron (NR_038352, intron 2 of 8)	MIR3|SINE|MIR	17352	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
163348	chr3	50433401	50433600	+	0	NA	intron (NM_006030, intron 3 of 37)	AluJo|SINE|Alu	68137	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
233286	chr9	137314051	137314700	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-12104	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
171510	chr3	196636251	196636350	+	0	NA	Intergenic	Intergenic	-3394	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
90502	chr17	1454301	1454500	+	0	NA	intron (NM_016823, intron 1 of 2)	AluSx1|SINE|Alu	1832	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
178669	chr4	152505551	152506050	+	0	NA	intron (NM_001349798, intron 2 of 13)	AluSz6|SINE|Alu	-16384	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
17214	chr1	156269521	156269780	+	0	NA	intron (NM_001323616, intron 8 of 22)	AluY|SINE|Alu	13175	NM_015327	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
197863	chr6	89081301	89082110	+	0	NA	intron (NM_006813, intron 1 of 1)	CpG	954	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
150645	chr21	43407821	43408250	+	0	NA	Intergenic	AluY|SINE|Alu	19096	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
76658	chr15	75651371	75652180	+	0	NA	intron (NM_153271, intron 1 of 1)	intron (NM_153271, intron 1 of 1)	2768	NM_001318146	257364		NM_153271	ENSG00000173548	SNX33	SH3PX3|SH3PXD3C|SNX30	sorting nexin 33	protein-coding
26762	chr10	22716151	22716680	+	0	NA	Intergenic	MER6|DNA|TcMar-Tigger	-1837	NM_005028	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
27299	chr10	30436351	30436600	+	0	NA	intron (NM_001320961, intron 1 of 7)	intron (NM_001320961, intron 1 of 7)	1829	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
63170	chr13	113671371	113671530	+	0	NA	intron (NM_002929, intron 2 of 6)	intron (NM_002929, intron 2 of 6)	4231	NM_002929	6011		NM_002929	ENSG00000185974	GRK1	GPRK1|RHOK|RK	G protein-coupled receptor kinase 1	protein-coding
57911	chr12	123476501	123477100	+	0	NA	intron (NM_001319243, intron 6 of 7)	MLT1C|LTR|ERVL-MaLR	17096	NM_180699	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
194165	chr6	32095451	32096230	+	0	NA	exon (NM_001365276, exon 3 of 44).4	exon (NM_001365276, exon 3 of 44).4	13498	NM_019105	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
4428	chr1	21272271	21272430	+	0	NA	intron (NM_001397, intron 4 of 18)	AluSz6|SINE|Alu	7265	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
225691	chr9	36493601	36494350	+	0	NA	Intergenic	L1ME5|LINE|L1	-78887	NR_046337	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
123966	chr19	55409721	55409980	+	0	NA	Intergenic	Intergenic	-2062	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
79676	chr16	1247871	1248030	+	0	NA	Intergenic	Intergenic	7245	NM_003294	7177		NM_003294	ENSG00000172236	TPSAB1	TPS1|TPS2|TPSB1|TPSB2|Tryptase-2	tryptase alpha/beta 1	protein-coding
51462	chr12	52057321	52057930	+	0	NA	intron (NM_173157, intron 6 of 6)	intron (NM_173157, intron 6 of 6)	6183	NM_173157	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
98515	chr17	47533221	47533480	+	0	NA	intron (NM_006310, intron 1 of 22)	intron (NM_006310, intron 1 of 22)	2242	NM_006310	9520		NM_006310	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
227381	chr9	89504871	89505450	+	0	NA	Intergenic	Intergenic	-7047	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
81022	chr16	4255801	4256880	+	0	NA	TTS (NM_003223)	TTS (NM_003223)	-2551	NR_039999	100507501		NR_039999		LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA
171767	chr4	12901	13130	+	0	NA	Intergenic	LTR60B|LTR|ERV1	-40270	NM_001286054	152687		NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding
32926	chr10	110228701	110229100	+	0	NA	intron (NM_001008541, intron 2 of 4)	intron (NM_001008541, intron 2 of 4)	2904	NM_005962	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
69687	chr14	98164701	98164900	+	0	NA	Intergenic	Intergenic	-186676	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
121807	chr19	47923121	47923900	+	0	NA	promoter-TSS (NR_024214)	promoter-TSS (NR_024214)	-269	NR_024242	100191063		NR_024242		SNAR-A14	-	small NF90 (ILF3) associated RNA A14	snRNA
20506	chr1	198662351	198662450	+	0	NA	intron (NM_002838, intron 2 of 32)	MIR|SINE|MIR	23360	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
215994	chr8	8888751	8889250	+	0	NA	intron (NM_004225, intron 1 of 2)	L1MC1|LINE|L1	4630	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
161369	chr3	40505751	40506680	+	0	NA	intron (NM_001256168, intron 1 of 2)	intron (NM_001256168, intron 1 of 2)	104	NM_001256168	253639		NM_175888	ENSG00000177842	ZNF620	-	zinc finger protein 620	protein-coding
88338	chr16	84521001	84521750	+	0	NA	Intergenic	Intergenic	-16716	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
173445	chr4	8241521	8242750	+	0	NA	Intergenic	L1MB5|LINE|L1	-27619	NM_053044	94031		NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
104154	chr17	80392501	80392700	+	0	NA	intron (NM_001256071, intron 67 of 67)	intron (NM_001256071, intron 67 of 67)	-22567	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
15816	chr1	151302171	151303150	+	0	NA	intron (NM_001369628, intron 6 of 12)	AluY|SINE|Alu	20361	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
121586	chr19	47303901	47304600	+	0	NA	Intergenic	Intergenic	-5611	NM_001736	728		NM_001736	ENSG00000197405	C5AR1	C5A|C5AR|C5R1|CD88	complement C5a receptor 1	protein-coding
166538	chr3	114860671	114860830	+	0	NA	intron (NM_015642, intron 3 of 9)	intron (NM_015642, intron 3 of 9)	-12283	NR_126422	104413890		NR_126422	ENSG00000239946	ZBTB20-AS3	-	ZBTB20 antisense RNA 3	ncRNA
137553	chr2	197235171	197235480	+	0	NA	intron (NM_153697, intron 1 of 9)	L2c|LINE|L2	37334	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
152649	chr22	21550671	21550980	+	0	NA	exon (NM_001128633, exon 1 of 1).2	exon (NM_001128633, exon 1 of 1).2	259	NM_001128635	440804		NM_001128635	ENSG00000274600	RIMBP3B	RIM-BP3.2|RIM-BP3.B|RIMBP3.2	RIMS binding protein 3B	protein-coding
92253	chr17	7987451	7987750	+	0	NA	Intergenic	Intergenic	-15015	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
139140	chr2	219029451	219030700	+	0	NA	exon (NM_001278295, exon 10 of 13)	exon (NM_001278295, exon 10 of 13)	11441	NM_001278296	255101		NM_152389	ENSG00000181378	CFAP65	CCDC108|SPGF40	cilia and flagella associated protein 65	protein-coding
100762	chr17	63973501	63974100	+	0	NA	promoter-TSS (NM_000334)	promoter-TSS (NM_000334)	-882	NM_000334	6329		NM_000334	ENSG00000007314	SCN4A	CMS16|CMYP22A|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium voltage-gated channel alpha subunit 4	protein-coding
59879	chr13	30673721	30675530	+	0	NA	Intergenic	MER106A|DNA|hAT-Charlie	-38853	NM_001204406	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
230578	chr9	128553801	128555200	+	0	NA	intron (NM_001375311, intron 1 of 56)	intron (NM_001375311, intron 1 of 56)	1913	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
145931	chr20	46021471	46022400	+	0	NA	non-coding (NR_147699, exon 1 of 3)	non-coding (NR_147699, exon 1 of 3)	138	NR_147699	109729184		NR_147699	ENSG00000204044	SLC12A5-AS1	-	SLC12A5 and MMP9 antisense RNA 1	ncRNA
117782	chr19	29779971	29780130	+	0	NA	Intergenic	Intergenic	-31941	NM_001322261	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
14095	chr1	120910051	120910150	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2138	NR_024584	728855		NR_024510		LINC00623	CH17-118O6.2	long intergenic non-protein coding RNA 623	ncRNA
222706	chr8	141304551	141304950	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	3538	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
12389	chr1	101279851	101280600	+	0	NA	Intergenic	Intergenic	43206	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
46272	chr11	124836601	124837930	+	0	NA	Intergenic	Intergenic	-28167	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
123998	chr19	55454001	55454200	+	0	NA	intron (NM_024710, intron 5 of 5)	intron (NM_024710, intron 5 of 5)	7542	NM_001136201	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
213889	chr7	142450301	142450700	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-24027	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
120683	chr19	45149321	45149980	+	0	NA	TTS (NM_198478)	TTS (NM_198478)	10500	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
140858	chr2	237434801	237435480	+	0	NA	Intergenic	L2c|LINE|L2	-20933	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
235432	chrX	45824651	45824830	+	0	NA	Intergenic	Intergenic	26750	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
206376	chr7	30671901	30672130	+	0	NA	intron (NM_001202483, intron 2 of 12)	intron (NM_001202483, intron 2 of 12)	10441	NM_001883	1395		NM_001883	ENSG00000106113	CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
107446	chr18	46333701	46335230	+	0	NA	intron (NM_001256758, intron 1 of 5)	CpG	241	NM_001256758	494470		NM_152470	ENSG00000141622	ARK2C	ARKL2|RNF111L2|RNF165|lncAMPC	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C	protein-coding
97050	chr17	42340471	42341580	+	0	NA	intron (NM_001369519, intron 4 of 23)	LTR79|LTR|ERVL	47417	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
22605	chr1	223301321	223302000	+	0	NA	intron (NM_001037175, intron 2 of 5)	intron (NM_001037175, intron 2 of 5)	62516	NM_001037175	55061		NM_017982	ENSG00000143502	SUSD4	PRO222	sushi domain containing 4	protein-coding
18541	chr1	162152251	162152750	+	0	NA	intron (NM_014697, intron 1 of 9)	intron (NM_014697, intron 1 of 9)	-4607	NR_039798	100616386		NR_039798	ENSG00000266144	MIR4654	mir-4654	microRNA 4654	ncRNA
5889	chr1	26791971	26792130	+	0	NA	intron (NM_001374486, intron 2 of 2)	L2c|LINE|L2	3862	NM_001374482	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
215129	chr7	155375301	155375780	+	0	NA	Intergenic	Intergenic	-6536	NR_147174	100286906		NR_147174		LINC03010	-	long intergenic non-protein coding RNA 3010	ncRNA
89563	chr16	89251271	89251430	+	0	NA	Intergenic	L1MB3|LINE|L1	33647	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
155930	chr22	39657021	39657280	+	0	NA	intron (NM_001003406, intron 9 of 35)	MIR3|SINE|MIR	86397	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
161063	chr3	38036751	38037280	+	0	NA	Intergenic	L2a|LINE|L2	-2190	NM_007337	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
133316	chr2	113886651	113887900	+	0	NA	intron (NR_110174, intron 1 of 4)	MSTD|LTR|ERVL-MaLR	-2659	NR_102318	10096		NM_005721	ENSG00000115091	ACTR3	ARP3	actin related protein 3	protein-coding
128516	chr2	60560671	60561100	+	0	NA	Intergenic	(TGA)n|Simple_repeat|Simple_repeat	-7231	NM_022893	53335		NM_018014	ENSG00000119866	BCL11A	CTIP1|DILOS|EVI9|HBFQTL5|SMARCM1|ZNF856	BCL11 transcription factor A	protein-coding
221169	chr8	120084521	120085000	+	0	NA	Intergenic	Intergenic	-40342	NM_001384947	7373		NM_021110	ENSG00000187955	COL14A1	UND	collagen type XIV alpha 1 chain	protein-coding
73002	chr15	40692621	40693000	+	0	NA	TTS (NR_040058)	TTS (NR_040058)	2295	NR_040058	100505648		NR_040058	ENSG00000245849	RAD51-AS1	TODRA	RAD51 antisense RNA 1	ncRNA
17722	chr1	158933621	158934230	+	0	NA	intron (NM_152501, intron 1 of 8)	L1MEh|LINE|L1	2373	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
70117	chr14	100246171	100246330	+	0	NA	intron (NM_003403, intron 1 of 4)	intron (NM_003403, intron 1 of 4)	7106	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
21633	chr1	206606901	206607250	+	0	NA	intron (NM_001201478, intron 4 of 12)	L1ME3G|LINE|L1	5390	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
14060	chr1	120778001	120778200	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-27456	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
167181	chr3	128126271	128126780	+	0	NA	intron (NM_001319086, intron 1 of 9)	AluSx1|SINE|Alu	-2713	NM_003707	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
102832	chr17	76465801	76466780	+	0	NA	intron (NM_001166579, intron 4 of 6)	intron (NM_001166579, intron 4 of 6)	-1313	NM_001088	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
128831	chr2	63257551	63257730	+	0	NA	intron (NR_148705, intron 13 of 16)	intron (NR_148705, intron 13 of 16)	-138098	NR_036635	100169989		NR_036635	ENSG00000293077	DBIL5P2	ELP1P	diazepam binding inhibitor-like 5 pseudogene 2	pseudo
50787	chr12	49046271	49046880	+	0	NA	intron (NM_003482, intron 16 of 54)	intron (NM_003482, intron 16 of 54)	14219	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
120784	chr19	45441821	45442080	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluSc8|SINE|Alu	5296	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
23740	chr1	232578721	232579250	+	0	NA	intron (NM_001377488, intron 1 of 21)	intron (NM_001377488, intron 1 of 21)	51148	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
187676	chr5	143221621	143222600	+	0	NA	intron (NR_146198, intron 22 of 22)	Charlie4z|DNA|hAT-Charlie	29610	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
148544	chr20	64185551	64185650	+	0	NA	intron (NM_004535, intron 1 of 22)	intron (NM_004535, intron 1 of 22)	21148	NM_004535	4661		NM_004535	ENSG00000196132	MYT1	C20orf36|MTF1|MYTI|NZF2|PLPB1|ZC2H2C1|ZC2HC4A	myelin transcription factor 1	protein-coding
103005	chr17	76826771	76827130	+	0	NA	Intergenic	Intergenic	27906	NR_110837	101928514		NR_110837	ENSG00000267065	LINC02080	-	long intergenic non-protein coding RNA 2080	ncRNA
159492	chr3	14180551	14180650	+	0	NA	intron (NM_014463, intron 1 of 3)	intron (NM_014463, intron 1 of 3)	1783	NM_014463	27258		NM_014463	ENSG00000170860	LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
119412	chr19	40273251	40274030	+	0	NA	intron (NM_001243027, intron 1 of 13)	intron (NM_001243027, intron 1 of 13)	-8289	NM_001330511	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
44203	chr11	96292651	96292980	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-48623	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
149762	chr21	34707721	34708180	+	0	NA	exon (NM_053277, exon 3 of 6)	exon (NM_053277, exon 3 of 6)	29232	NR_024351	54064		NR_024351	ENSG00000230978	LINC00160	C21orf52|NCRNA00160	long intergenic non-protein coding RNA 160	ncRNA
109858	chr19	1228551	1229080	+	0	NA	TTS (NM_000455)	TTS (NM_000455)	9190	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
9202	chr1	45616921	45617330	+	0	NA	intron (NM_001195193, intron 11 of 12)	AluSg4|SINE|Alu	6929	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
10995	chr1	84507851	84508180	+	0	NA	intron (NM_001310156, intron 1 of 13)	AluSc|SINE|Alu	-1434	NM_005274	2787		NM_005274	ENSG00000174021	GNG5	-	G protein subunit gamma 5	protein-coding
184024	chr5	91315501	91315700	+	0	NA	Intergenic	AluSz|SINE|Alu	-1198	NR_103548	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
31477	chr10	96576421	96576680	+	0	NA	intron (NM_020123, intron 2 of 14)	MER20|DNA|hAT-Charlie	10462	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
194504	chr6	33279871	33281000	+	0	NA	exon (NM_001164267, exon 12 of 15).2	exon (NM_001164267, exon 12 of 15).2	3312	NM_003782	8705		NM_003782	ENSG00000235863	B3GALT4	BETA3GALT4|GALT2|GALT4	beta-1,3-galactosyltransferase 4	protein-coding
223148	chr8	143519871	143520230	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	-13802	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
68446	chr14	81527171	81527330	+	0	NA	intron (NM_005065, intron 2 of 20)	L2c|LINE|L2	6603	NM_005065	6400		NM_005065	ENSG00000071537	SEL1L	Hrd3|PRO1063|SEL1-LIKE|SEL1L1	SEL1L adaptor subunit of SYVN1 ubiquitin ligase	protein-coding
37859	chr11	33772421	33772700	+	0	NA	intron (NM_012175, intron 1 of 10)	L2a|LINE|L2	1960	NM_012175	26273		NM_012175	ENSG00000110429	FBXO3	FBA|FBX3	F-box protein 3	protein-coding
48833	chr12	12354621	12355280	+	0	NA	TTS (NR_024061)	TTS (NR_024061)	2117	NR_024061	503693		NR_024061	ENSG00000205791	LOH12CR2	LOH2CR12	loss of heterozygosity on chromosome 12, region 2	ncRNA
53154	chr12	57905071	57906030	+	0	NA	Intergenic	Intergenic	-9068	NR_148947	283387		NR_148947	ENSG00000245651	LOC283387	-	uncharacterized LOC283387	ncRNA
127211	chr2	38590971	38591130	+	0	NA	intron (NM_138394, intron 2 of 12)	intron (NM_138394, intron 2 of 12)	11878	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
179218	chr4	173518601	173519130	+	0	NA	intron (NM_001329597, intron 1 of 3)	CpG	279	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
10960	chr1	84186301	84186900	+	0	NA	intron (NM_207578, intron 5 of 8)	MER65C|LTR|ERV1	4968	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
132654	chr2	108737301	108737500	+	0	NA	intron (NM_006267, intron 6 of 28)	AluSc|SINE|Alu	17918	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
13148	chr1	111689851	111690350	+	0	NA	intron (NM_001370217, intron 1 of 7)	L1ME1|LINE|L1	25306	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
68628	chr14	89712551	89712730	+	0	NA	Intergenic	7SK|RNA|RNA	-93475	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
119741	chr19	41271751	41272250	+	0	NA	intron (NM_144732, intron 2 of 14)	intron (NM_144732, intron 2 of 14)	6919	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
191114	chr6	4025801	4026200	+	0	NA	intron (NR_146785, intron 1 of 20)	intron (NR_146785, intron 1 of 20)	4700	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
41364	chr11	65973471	65974100	+	0	NA	intron (NM_005146, intron 12 of 19)	L1ME3D|LINE|L1	12051	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
206043	chr7	27130151	27131170	+	0	NA	promoter-TSS (NM_002141)	promoter-TSS (NM_002141)	97	NM_002141	3201		NM_002141	ENSG00000197576	HOXA4	HOX1|HOX1D	homeobox A4	protein-coding
74442	chr15	59437251	59437350	+	0	NA	promoter-TSS (NM_152450)	promoter-TSS (NM_152450)	-886	NM_152450	145773		NM_152450	ENSG00000157470	FAM81A	-	family with sequence similarity 81 member A	protein-coding
229193	chr9	114665371	114665630	+	0	NA	TTS (NM_001371884)	TTS (NM_001371884)	-7695	NM_001354645	105376230		NM_001354645	ENSG00000230054	TEX53	-	testis expressed 53	protein-coding
169099	chr3	154334501	154335250	+	0	NA	TTS (NM_001038705)	TTS (NM_001038705)	-10378	NM_001114397	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
131728	chr2	98149021	98149630	+	0	NA	promoter-TSS (NM_001345864)	promoter-TSS (NM_001345864)	-208	NM_001345864	200403		NM_144992	ENSG00000168658	VWA3B	SCAR22	von Willebrand factor A domain containing 3B	protein-coding
202202	chr6	156686471	156688150	+	0	NA	Intergenic	CpG	-88716	NM_001371656	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
228201	chr9	97802151	97802450	+	0	NA	intron (NR_147055, intron 5 of 10)	intron (NR_147055, intron 5 of 10)	50780	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
218254	chr8	42167551	42168050	+	0	NA	exon (NM_001134296, exon 9 of 10)	exon (NM_001134296, exon 9 of 10)	14737	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
120266	chr19	42601871	42602100	+	0	NA	intron (NR_073180, intron 2 of 2)	intron (NR_073180, intron 2 of 2)	-7061	NM_001816	1088		NM_001816	ENSG00000124469	CEACAM8	CD66b|CD67|CGM6|NCA-95	CEA cell adhesion molecule 8	protein-coding
164206	chr3	56883851	56884430	+	0	NA	intron (NM_001377407, intron 3 of 12)	MIRb|SINE|MIR	32296	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
132904	chr2	111406771	111407130	+	0	NA	intron (NR_136161, intron 1 of 5)	THE1B|LTR|ERVL-MaLR	-85859	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
39636	chr11	61546751	61547050	+	0	NA	intron (NM_001252065, intron 3 of 9)	intron (NM_001252065, intron 3 of 9)	-4024	NM_001370210	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
169142	chr3	156291201	156291880	+	0	NA	5' UTR (NM_001308222, exon 1 of 13)	5' UTR (NM_001308222, exon 1 of 13)	503	NM_001308222	7881		NM_003471	ENSG00000169282	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel subfamily A regulatory beta subunit 1	protein-coding
198184	chr6	96499501	96500330	+	0	NA	Intergenic	L1PA6|LINE|L1	-21891	NM_015323	23376		NM_015323	ENSG00000014123	UFL1	KIAA0776|Maxer|NLBP|RCAD	UFM1 specific ligase 1	protein-coding
81392	chr16	5096701	5099250	+	0	NA	promoter-TSS (NM_001289029)	promoter-TSS (NM_001289029)	-155	NM_001289029	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
13841	chr1	117638951	117639250	+	0	NA	Intergenic	Intergenic	33052	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
5359	chr1	25343621	25343880	+	0	NA	intron (NM_014313, intron 3 of 6)	L2a|LINE|L2	5416	NM_014313	23585		NM_014313	ENSG00000183726	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
54604	chr12	92542051	92542150	+	0	NA	Intergenic	Intergenic	75421	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
59661	chr13	28530901	28531100	+	0	NA	Intergenic	Intergenic	-35872	NM_001160030	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
227506	chr9	91274251	91274550	+	0	NA	intron (NM_001351432, intron 7 of 10)	intron (NM_001351432, intron 7 of 10)	87518	NM_001698	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
46752	chr11	129363971	129364500	+	0	NA	Intergenic	CpG	-11613	NM_003658	8538		NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
92773	chr17	15651621	15651900	+	0	NA	5' UTR (NM_006470, exon 4 of 9)	5' UTR (NM_006470, exon 4 of 9)	31191	NM_006470	10626		NM_006470	ENSG00000221926	TRIM16	EBBP	tripartite motif containing 16	protein-coding
228080	chr9	96398621	96399700	+	0	NA	intron (NM_153695, intron 1 of 4)	L1MB5|LINE|L1	-15449	NM_007001	11046		NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	solute carrier family 35 member D2	protein-coding
70319	chr14	101830351	101830600	+	0	NA	intron (NM_001161725, intron 3 of 15)	intron (NM_001161725, intron 3 of 15)	20612	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
112582	chr19	6663321	6664330	+	0	NA	3' UTR (NM_003807, exon 5 of 5)	3' UTR (NM_003807, exon 5 of 5)	6333	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
211702	chr7	106792951	106793330	+	0	NA	Intergenic	Intergenic	-72142	NM_001282427	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
132753	chr2	109761971	109762130	+	0	NA	intron (NM_001384362, intron 2 of 22).2	intron (NM_001384362, intron 2 of 22).2	1378	NM_001384363	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
201425	chr6	147108601	147109000	+	0	NA	intron (NR_034115, intron 4 of 10)	L1MC5|LINE|L1	-50125	NR_132442	106182249		NR_132442	ENSG00000196634	LUADT1	-	lung adenocarcinoma associated transcript 1	ncRNA
208628	chr7	72974901	72976950	+	0	NA	Intergenic	Intergenic	6243	NR_104007	100101148		NR_104007		FKBP6P1	-	FKBP6 pseudogene 1	pseudo
87439	chr16	70740851	70741680	+	0	NA	intron (NM_001351157, intron 12 of 17)	intron (NM_001351157, intron 12 of 17)	-13830	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
221010	chr8	116227551	116227650	+	0	NA	intron (NR_046215, intron 4 of 13)	intron (NR_046215, intron 4 of 13)	97459	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
121978	chr19	48495701	48496350	+	0	NA	intron (NM_001080434, intron 12 of 15)	intron (NM_001080434, intron 12 of 15)	17164	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
203539	chr7	872801	874300	+	0	NA	non-coding (NR_160283, exon 21 of 21)	non-coding (NR_160283, exon 21 of 21)	-3004	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
12187	chr1	100372871	100373030	+	0	NA	intron (NM_001319210, intron 2 of 16)	Tigger1|DNA|TcMar-Tigger	20444	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
193458	chr6	30507721	30507980	+	0	NA	Intergenic	Intergenic	-8416	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
6171	chr1	27427471	27427630	+	0	NA	intron (NM_006990, intron 2 of 8)	intron (NM_006990, intron 2 of 8)	34928	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
133537	chr2	120254671	120254980	+	0	NA	intron (NM_002881, intron 1 of 4)	AluJb|SINE|Alu	1973	NM_001369400	5899		NM_002881	ENSG00000144118	RALB	-	RAS like proto-oncogene B	protein-coding
128337	chr2	54721451	54721900	+	0	NA	Intergenic	Intergenic	-3337	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
118057	chr19	34272521	34272780	+	0	NA	intron (NM_014686, intron 1 of 13)	intron (NM_014686, intron 1 of 13)	18096	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
114917	chr19	13955621	13955880	+	0	NA	intron (NM_138353, intron 3 of 12)	intron (NM_138353, intron 3 of 12)	-2358	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
154997	chr22	37313051	37313150	+	0	NA	intron (NM_001318024, intron 12 of 12)	MIRb|SINE|MIR	30592	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
192161	chr6	17586601	17587000	+	0	NA	Intergenic	Intergenic	-13502	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
230986	chr9	129487891	129489750	+	0	NA	non-coding (NR_038955, exon 1 of 5)	non-coding (NR_038955, exon 1 of 5)	160	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
43533	chr11	82765501	82765700	+	0	NA	Intergenic	L1P2|LINE|L1	-31736	NM_175885	220382		NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
52019	chr12	53986021	53986600	+	0	NA	promoter-TSS (NR_047506)	promoter-TSS (NR_047506)	-791	NR_047506	100874365		NR_047506	ENSG00000251151	HOXC-AS3	-	HOXC cluster antisense RNA 3	ncRNA
129943	chr2	73832121	73832380	+	0	NA	intron (NR_148668, intron 2 of 12)	AluSx|SINE|Alu	3283	NM_006463	10617		NM_006463	ENSG00000124356	STAMBP	AMSH|MICCAP	STAM binding protein	protein-coding
106324	chr18	12934151	12935150	+	0	NA	Intergenic	Intergenic	-13334	NM_031216	81929		NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
61543	chr13	60398751	60398850	+	0	NA	intron (NM_001146070, intron 1 of 13)	intron (NM_001146070, intron 1 of 13)	1580	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
216455	chr8	19560421	19560700	+	0	NA	intron (NM_001354497, intron 1 of 7)	L1ME3B|LINE|L1	41985	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
168705	chr3	150636971	150637130	+	0	NA	Intergenic	Intergenic	33729	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
16402	chr1	154439401	154440080	+	0	NA	intron (NM_181359, intron 6 of 8)	L1MB3|LINE|L1	-33176	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
212048	chr7	114965251	114965750	+	0	NA	intron (NM_199072, intron 3 of 4)	L2c|LINE|L2	43346	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
189447	chr5	172986621	172986880	+	0	NA	intron (NM_003945, intron 1 of 3)	intron (NM_003945, intron 1 of 3)	2979	NM_003945	8992		NM_003945	ENSG00000113732	ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase H+ transporting V0 subunit e1	protein-coding
117850	chr19	32201621	32201880	+	0	NA	Intergenic	Intergenic	-95834	NR_110694	101927411		NR_110694	ENSG00000267204	LINC01782	-	long intergenic non-protein coding RNA 1782	ncRNA
856	chr1	1614901	1617000	+	0	NA	promoter-TSS (NM_001170689)	promoter-TSS (NM_001170689)	95	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
34744	chr10	133782701	133783430	+	0	NA	Intergenic	MER72|LTR|ERV1	-156270	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
9239	chr1	46062601	46063030	+	0	NA	intron (NM_003629, intron 5 of 9)	(GGTTTT)n|Simple_repeat|Simple_repeat	67858	NM_001328651	8503		NM_003629	ENSG00000117461	PIK3R3	p55|p55-GAMMA|p55PIK	phosphoinositide-3-kinase regulatory subunit 3	protein-coding
71437	chr14	105678771	105679330	+	0	NA	Intergenic	L1MEd|LINE|L1	-6243	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
121301	chr19	46732271	46732630	+	0	NA	intron (NM_001039877, intron 5 of 17)	L2a|LINE|L2	-13607	NM_024301	79147		NM_024301	ENSG00000181027	FKRP	FKTR|LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
111354	chr19	3670571	3671200	+	0	NA	intron (NM_001300849, intron 1 of 16)	intron (NM_001300849, intron 1 of 16)	29583	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
159985	chr3	18223701	18223900	+	0	NA	intron (NR_161333, intron 4 of 4)	intron (NR_161333, intron 4 of 4)	201539	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
140677	chr2	234077551	234078050	+	0	NA	TTS (NM_006944)	TTS (NM_006944)	27098	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
41928	chr11	67295101	67295300	+	0	NA	intron (NM_207354, intron 6 of 14)	AluY|SINE|Alu	5897	NM_001347901	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
177494	chr4	114132871	114133050	+	0	NA	Intergenic	L1PREC2|LINE|L1	-153313	NM_024590	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
56897	chr12	120356151	120356880	+	0	NA	intron (NM_002442, intron 9 of 14)	L2b|LINE|L2	12649	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
187649	chr5	143053221	143053650	+	0	NA	intron (NR_146198, intron 14 of 22)	intron (NR_146198, intron 14 of 22)	-139065	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
233663	chrX	1050701	1051130	+	0	NA	Intergenic	AluSx1|SINE|Alu	161734	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
227887	chr9	93950621	93951530	+	0	NA	TTS (NM_021570)	TTS (NM_021570)	4280	NM_021570	56033		NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
121034	chr19	45811301	45811500	+	0	NA	intron (NM_030785, intron 1 of 5)	L2a|LINE|L2	3908	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
123612	chr19	54518671	54519080	+	0	NA	Intergenic	Intergenic	-13817	NR_104095	90011		NM_033206	ENSG00000290933	KIR3DX1	KIR3DL0|LENG12	killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)	pseudo
136223	chr2	174588971	174589800	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	8419	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
99268	chr17	49742221	49743530	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	21256	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
98134	chr17	45948751	45949580	+	0	NA	intron (NR_165166, intron 1 of 9)	CpG	-50085	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
3256	chr1	14334771	14335130	+	0	NA	Intergenic	(ACAGAG)n|Simple_repeat|Simple_repeat	85023	NR_149058	105376762		NR_149058	ENSG00000234593	KAZN-AS1	-	KAZN antisense RNA 1	ncRNA
190533	chr5	180658271	180658430	+	0	NA	Intergenic	L1MB3|LINE|L1	-8750	NM_002020	2324		NM_002020	ENSG00000037280	FLT4	CHTD7|FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3	fms related receptor tyrosine kinase 4	protein-coding
14473	chr1	144490071	144491000	+	0	NA	Intergenic	LTR75|LTR|ERVL	-28866	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
94690	chr17	30650721	30651930	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	27007	NR_033420	6459		NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2	pseudo
169393	chr3	160561071	160561830	+	0	NA	intron (NM_002268, intron 1 of 16)	intron (NM_002268, intron 1 of 16)	4121	NM_002268	3840		NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
191636	chr6	13280351	13280450	+	0	NA	non-coding (NR_160971, exon 5 of 5)	non-coding (NR_160971, exon 5 of 5)	3042	NR_134859	100130357		NM_001242698	ENSG00000215022	LOC100130357	-	uncharacterized LOC100130357	ncRNA
120298	chr19	43470251	43470750	+	0	NA	Intergenic	Intergenic	-4892	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
174100	chr4	36065301	36065500	+	0	NA	TTS (NM_015230)	TTS (NM_015230)	178539	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
14325	chr1	143901001	143901530	+	0	NA	intron (NR_160914, intron 1 of 2)	intron (NR_160914, intron 1 of 2)	3385	NR_160913	338391		NR_160913		H2BP2	HIST2H2BB	H2B histone pseudogene 2	pseudo
7536	chr1	34868771	34868930	+	0	NA	exon (NM_001080418, exon 9 of 12)	exon (NM_001080418, exon 9 of 12)	-9101	NM_001320261	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
136347	chr2	176001521	176002680	+	0	NA	intron (NR_130941, intron 1 of 14)	CpG	167	NM_030650	80856		NM_030650	ENSG00000144320	LNPK	KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding
237477	chrX	119786821	119787530	+	0	NA	TTS (NR_002584)	TTS (NR_002584)	309	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
116271	chr19	17689351	17689730	+	0	NA	Intergenic	Intergenic	-1341	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
206349	chr7	30352221	30352650	+	0	NA	intron (NM_147128, intron 2 of 4)	intron (NM_147128, intron 2 of 4)	-17615	NR_002186	222161		NM_152747		DKFZP586I1420	-	uncharacterized protein DKFZp586I1420	pseudo
107479	chr18	47151951	47152050	+	0	NA	TTS (NM_016097)	TTS (NM_016097)	-1500	NM_032124	84064		NM_032124	ENSG00000167220	HDHD2	3110052N05Rik|HEL-S-301	haloacid dehalogenase like hydrolase domain containing 2	protein-coding
221237	chr8	121830071	121830300	+	0	NA	Intergenic	Intergenic	-188745	NM_005328	3037		NM_005328	ENSG00000170961	HAS2	-	hyaluronan synthase 2	protein-coding
109677	chr19	1029501	1029730	+	0	NA	intron (NM_201277, intron 1 of 5)	intron (NM_201277, intron 1 of 5)	3007	NM_001303501	1265		NM_004368	ENSG00000064666	CNN2	-	calponin 2	protein-coding
7704	chr1	36084951	36085750	+	0	NA	intron (NM_014466, intron 3 of 9)	intron (NM_014466, intron 3 of 9)	1256	NM_014466	27285		NM_014466	ENSG00000092850	TEKT2	TEKTB1|TEKTIN-T|h-tektin-t	tektin 2	protein-coding
44726	chr11	111777021	111777700	+	0	NA	Intergenic	Intergenic	-10971	NM_181700	5519		NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
71955	chr15	23503721	23503980	+	0	NA	Intergenic	MER61F|LTR|ERV1	-56607	NM_001304388	283685		NM_182561	ENSG00000174450	GOLGA6L2	CT105	golgin A6 family like 2	protein-coding
233764	chrX	1410321	1410780	+	0	NA	intron (NR_026710, intron 3 of 3)	AluSg|SINE|Alu	10019	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
48180	chr12	7996671	7996830	+	0	NA	Intergenic	AluSz6|SINE|Alu	-35966	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
93815	chr17	20697871	20698030	+	0	NA	Intergenic	Intergenic	-14496	NR_073509	100287072		NR_073509		LOC100287072	-	ribosomal protein S6 kinase B1 pseudogene	pseudo
94665	chr17	30331801	30333600	+	0	NA	intron (NM_206832, intron 1 of 6)	intron (NM_206832, intron 1 of 6)	1357	NM_001319942	388364		NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
229342	chr9	120915521	120917200	+	0	NA	intron (NM_005658, intron 3 of 7)	L1ME1|LINE|L1	-1788	NM_001190947	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
17655	chr1	157489301	157489680	+	0	NA	Intergenic	Intergenic	63025	NM_031281	83416		NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
82558	chr16	18565601	18565800	+	0	NA	Intergenic	AluSz|SINE|Alu	-3588	NM_001004060	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
60761	chr13	44987751	44988250	+	0	NA	intron (NM_012345, intron 1 of 9)	L2a|LINE|L2	1471	NM_012345	26747		NM_012345	ENSG00000083635	NUFIP1	NUFIP|Rsa1|bA540M5.1	nuclear FMR1 interacting protein 1	protein-coding
162883	chr3	49381101	49381700	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluSq2|SINE|Alu	-22800	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
165414	chr3	97971271	97972750	+	0	NA	5' UTR (NM_032778, exon 1 of 10)	5' UTR (NM_032778, exon 1 of 10)	421	NM_153182	84864		NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
152676	chr22	21605971	21606880	+	0	NA	intron (NM_003347, intron 2 of 3)	AluSx3|SINE|Alu	23597	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
104715	chr17	81556301	81556500	+	0	NA	TTS (NM_017921)	TTS (NM_017921)	-4047	NM_025161	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
189004	chr5	168485371	168485630	+	0	NA	promoter-TSS (NM_002887)	promoter-TSS (NM_002887)	-971	NM_002887	5917		NM_002887	ENSG00000113643	RARS1	ArgRS|DALRD1|HLD9|RARS	arginyl-tRNA synthetase 1	protein-coding
160255	chr3	25595071	25595650	+	0	NA	intron (NM_000965, intron 7 of 7)	intron (NM_000965, intron 7 of 7)	69012	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
67509	chr14	70958651	70958950	+	0	NA	intron (NM_014982, intron 2 of 35)	MLT1K|LTR|ERVL-MaLR	51341	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
70611	chr14	102796821	102797080	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	19471	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
218817	chr8	59109321	59109680	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	9647	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
86477	chr16	66974601	66975680	+	0	NA	TTS (NM_024922)	TTS (NM_024922)	7665	NM_001185176	23491		NM_012122	ENSG00000172828	CES3	ES31	carboxylesterase 3	protein-coding
29988	chr10	73746651	73747180	+	0	NA	exon (NM_004922, exon 3 of 24)	exon (NM_004922, exon 3 of 24)	2543	NM_198597	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
201316	chr6	144375521	144375780	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	-30005	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
146039	chr20	47346221	47346880	+	0	NA	intron (NM_001281781, intron 2 of 20)	intron (NM_001281781, intron 2 of 20)	5199	NM_001363741	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
223167	chr8	143540551	143542050	+	0	NA	intron (NM_015117, intron 1 of 11)	CpG	147	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
63527	chr13	114339171	114339330	+	0	NA	Intergenic	Intergenic	-5302	NR_126391	104355150		NR_126391		LINC01054	-	long intergenic non-protein coding RNA 1054	ncRNA
121850	chr19	48207351	48207750	+	0	NA	TTS (NM_001184901)	TTS (NM_001184901)	33513	NR_033679	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
189331	chr5	172168201	172169250	+	0	NA	intron (NM_005990, intron 1 of 18)	MIRc|SINE|MIR	19499	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
180480	chr5	12876621	12877080	+	0	NA	TTS (NR_147005)	TTS (NR_147005)	156036	NR_147005	105374658		NR_147005		LINC02220	-	long intergenic non-protein coding RNA 2220	ncRNA
10462	chr1	66328851	66329330	+	0	NA	intron (NM_001037340, intron 5 of 14)	MER45C|DNA|hAT-Tip100	-3018	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
34056	chr10	124748221	124748500	+	0	NA	Intergenic	Intergenic	-3982	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
29239	chr10	69095321	69096380	+	0	NA	intron (NM_001321054, intron 1 of 1)	AluSx1|SINE|Alu	7747	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
211887	chr7	111098651	111099030	+	0	NA	intron (NM_001099660, intron 2 of 3)	MIRb|SINE|MIR	7713	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
220939	chr8	108467451	108467780	+	0	NA	intron (NM_014673, intron 5 of 10)	AluJb|SINE|Alu	23991	NM_014673	9694		NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
142695	chr20	8073201	8073600	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-53639	NM_021156	56255		NM_021156	ENSG00000125827	TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin related transmembrane protein 4	protein-coding
117034	chr19	18927671	18927980	+	0	NA	non-coding (NR_033677, exon 11 of 13)	non-coding (NR_033677, exon 11 of 13)	8110	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
87087	chr16	68468601	68469200	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-20392	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
117301	chr19	19493771	19493930	+	0	NA	intron (NM_001384539, intron 4 of 10)	intron (NM_001384539, intron 4 of 10)	21698	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
127354	chr2	39135501	39136000	+	0	NA	Intergenic	Intergenic	-10882	NM_001382394	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
60296	chr13	40635701	40636500	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSx|SINE|Alu	30541	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
173835	chr4	20699421	20701130	+	0	NA	promoter-TSS (NM_001258345)	promoter-TSS (NM_001258345)	-183	NM_145048	133015		NM_145048	ENSG00000163138	PACRGL	C4orf28	parkin coregulated like	protein-coding
199524	chr6	118722951	118723450	+	0	NA	Intergenic	Intergenic	-13125	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
154979	chr22	37289371	37289530	+	0	NA	intron (NM_013385, intron 1 of 12)	ERV3-16A3_I-int|LTR|ERVL	6942	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
208386	chr7	66679951	66680280	+	0	NA	intron (NM_001367722, intron 1 of 7)	LTR54|LTR|ERV1	-2051	NM_001367740	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
45664	chr11	119021971	119022330	+	0	NA	intron (NM_016146, intron 4 of 4)	AluSp|SINE|Alu	3384	NM_001318489	51399		NM_016146	ENSG00000196655	TRAPPC4	CGI-104|HSPC172|NEDESBA|PTD009|SBDN|SYNBINDIN|TRS23	trafficking protein particle complex subunit 4	protein-coding
169077	chr3	153623901	153625130	+	0	NA	intron (NR_146713, intron 3 of 6)	intron (NR_146713, intron 3 of 6)	138011	NR_146713	105374165		NR_146713		LINC02006	-	long intergenic non-protein coding RNA 2006	ncRNA
176327	chr4	87985601	87985830	+	0	NA	Intergenic	Intergenic	10001	NM_001040058	6696		NM_000582	ENSG00000118785	SPP1	BNSP|BSPI|ETA-1|OPN	secreted phosphoprotein 1	protein-coding
3583	chr1	16214571	16214730	+	0	NA	Intergenic	MIRb|SINE|MIR	-1998	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
217237	chr8	26655301	26655730	+	0	NA	intron (NM_001244604, intron 13 of 13)	intron (NM_001244604, intron 13 of 13)	77110	NM_001244604	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
136431	chr2	176516151	176516450	+	0	NA	Intergenic	LTR52|LTR|ERVL	84752	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
172002	chr4	957971	958450	+	0	NA	TTS (NM_001347)	TTS (NM_001347)	15359	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
234418	chrX	16800821	16801600	+	0	NA	intron (NM_001168683, intron 1 of 7)	AluSx|SINE|Alu	14744	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
42983	chr11	73875171	73875330	+	0	NA	intron (NM_016565, intron 1 of 1)	intron (NM_016565, intron 1 of 1)	-1449	NM_001267806	80227		NM_025155	ENSG00000175575	PAAF1	PAAF|Rpn14|WDR71	proteasomal ATPase associated factor 1	protein-coding
66701	chr14	64234321	64234730	+	0	NA	intron (NR_073497, intron 6 of 6)	intron (NR_073497, intron 6 of 6)	18571	NM_182910	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
176243	chr4	86908171	86908750	+	0	NA	Intergenic	Intergenic	-16038	NM_001369889	132989		NM_144645	ENSG00000163633	C4orf36	-	chromosome 4 open reading frame 36	protein-coding
65032	chr14	39174451	39176030	+	0	NA	promoter-TSS (NM_002687)	promoter-TSS (NM_002687)	-14	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
7355	chr1	32774271	32774530	+	0	NA	TTS (NM_003680)	TTS (NM_003680)	8773	NM_001198972	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
166729	chr3	121658071	121658230	+	0	NA	intron (NM_005335, intron 2 of 13)	intron (NM_005335, intron 2 of 13)	2753	NM_005335	3059		NM_005335	ENSG00000180353	HCLS1	CTTNL|HS1|lckBP1|p75	hematopoietic cell-specific Lyn substrate 1	protein-coding
196620	chr6	44259871	44260350	+	0	NA	exon (NM_004556, exon 5 of 6)	exon (NM_004556, exon 5 of 6)	-2220	NM_001286511	347734		NM_178148	ENSG00000157593	SLC35B2	HLD26|PAPST1|SLL|UGTrel4	solute carrier family 35 member B2	protein-coding
110352	chr19	1889171	1889600	+	0	NA	Intergenic	AluSz|SINE|Alu	-3889	NM_031213	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
30956	chr10	87815171	87815550	+	0	NA	intron (NR_135914, intron 1 of 10)	intron (NR_135914, intron 1 of 10)	2871	NM_001321968	84896		NM_032810	ENSG00000138138	ATAD1	AFDC1|FNP001|HKPX4|Msp1|THORASE|hATAD1	ATPase family AAA domain containing 1	protein-coding
195241	chr6	36337821	36338100	+	0	NA	Intergenic	MIRb|SINE|MIR	-1072	NM_001010903	389384		NM_001010903	ENSG00000189325	BNIP5	C6orf222	BCL2 interacting protein 5	protein-coding
85692	chr16	56514901	56515100	+	0	NA	intron (NR_165297, intron 1 of 16)	intron (NR_165297, intron 1 of 16)	5024	NR_165297	583		NM_031885	ENSG00000125124	BBS2	BBS|RP74	Bardet-Biedl syndrome 2	protein-coding
44522	chr11	107683851	107683950	+	0	NA	Intergenic	Intergenic	28156	NM_003063	6588		NM_003063	ENSG00000170290	SLN	-	sarcolipin	protein-coding
231005	chr9	129504821	129505080	+	0	NA	intron (NR_038955, intron 4 of 4)	L2a|LINE|L2	16290	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
79132	chr16	225771	226130	+	0	NA	intron (NM_018032, intron 2 of 8)	intron (NM_018032, intron 2 of 8)	3499	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
2692	chr1	10633551	10633950	+	0	NA	Intergenic	Intergenic	158800	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
120032	chr19	41956551	41957200	+	0	NA	exon (NM_006423, exon 5 of 5)	exon (NM_006423, exon 5 of 5)	2446	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
234685	chrX	20320621	20321300	+	0	NA	Intergenic	Intergenic	-54051	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
59369	chr13	24694021	24694480	+	0	NA	intron (NM_001185085, intron 10 of 22)	intron (NM_001185085, intron 10 of 22)	13839	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
143543	chr20	31583651	31583950	+	0	NA	Intergenic	AluSc8|SINE|Alu	-10537	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
179773	chr5	309651	309900	+	0	NA	intron (NM_013232, intron 4 of 5)	CpG	-11939	NM_001377236	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
25215	chr10	5779451	5779980	+	0	NA	intron (NM_001115156, intron 5 of 9)	AluJb|SINE|Alu	33719	NM_001494	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
178856	chr4	154332851	154333480	+	0	NA	exon (NM_001358235, exon 5 of 20)	exon (NM_001358235, exon 5 of 20)	158634	NM_001142552	54798		NM_017639	ENSG00000197410	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
126692	chr2	30148801	30149180	+	0	NA	intron (NM_001127400, intron 2 of 3)	intron (NM_001127400, intron 2 of 3)	1983	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
176570	chr4	98655801	98656450	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	2486	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
84711	chr16	30877871	30878030	+	0	NA	intron (NR_110942, intron 2 of 2)	AluSx1|SINE|Alu	2490	NR_110942	101928736		NR_110940	ENSG00000260083	MIR762HG	-	MIR762 host gene	ncRNA
1796	chr1	6171521	6171780	+	0	NA	intron (NM_015557, intron 1 of 41)	intron (NM_015557, intron 1 of 41)	8671	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
36022	chr11	2913451	2915330	+	0	NA	intron (NM_183233, intron 5 of 10)	intron (NM_183233, intron 5 of 10)	-10815	NR_169304	5003		NM_007105	ENSG00000254827	SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	SLC22A18 antisense RNA	ncRNA
101286	chr17	66400281	66400800	+	0	NA	intron (NR_110822, intron 3 of 3)	L1MB2|LINE|L1	16314	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
58763	chr12	132686751	132689580	+	0	NA	promoter-TSS (NM_006231)	promoter-TSS (NM_006231)	578	NM_018663	5827		NM_018663	ENSG00000176894	PXMP2	MPV17L3|PMP22	peroxisomal membrane protein 2	protein-coding
7166	chr1	32249751	32250700	+	0	NA	Intergenic	Intergenic	-1040	NM_005356	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
182672	chr5	67307501	67307700	+	0	NA	Intergenic	Intergenic	-110801	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
210704	chr7	100580371	100580530	+	0	NA	intron (NM_001289934, intron 4 of 17)	(CA)n|Simple_repeat|Simple_repeat	-5231	NM_001289933								
171748	chr3	198101301	198102100	+	0	NA	Intergenic	Intergenic	-21029	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
237499	chrX	119955121	119955380	+	0	NA	Intergenic	L1MC2|LINE|L1	-11499	NM_024528	79576		NM_024528	ENSG00000101882	NKAP	MRXSHD	NFKB activating protein	protein-coding
220751	chr8	102288451	102289050	+	0	NA	intron (NM_001282873, intron 35 of 58)	intron (NM_001282873, intron 35 of 58)	49299	NR_125415	101927221		NR_125415		UBR5-DT	UBR5-AS1	UBR5 divergent transcript	ncRNA
6682	chr1	29145221	29145480	+	0	NA	Intergenic	AluSc|SINE|Alu	-21447	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
9495	chr1	51240851	51241600	+	0	NA	intron (NM_014372, intron 1 of 2)	FLAM_C|SINE|Alu	4952	NM_014372	26994		NM_014372	ENSG00000123091	RNF11	CGI-123|SID1669	ring finger protein 11	protein-coding
107497	chr18	47888201	47888400	+	0	NA	intron (NM_001003652, intron 2 of 10)	L1MEg|LINE|L1	42359	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
22573	chr1	222706651	222707150	+	0	NA	intron (NM_022831, intron 1 of 9)	L1MB8|LINE|L1	5591	NM_022831	64853		NM_022831	ENSG00000186063	AIDA	C1orf80	axin interactor, dorsalization associated	protein-coding
90223	chr17	575071	575230	+	0	NA	intron (NM_018289, intron 12 of 17)	intron (NM_018289, intron 12 of 17)	-129210	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
98840	chr17	48431451	48432350	+	0	NA	Intergenic	Intergenic	-1686	NM_001075099	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
153271	chr22	24145971	24146930	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-35037	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
51995	chr12	53964801	53965430	+	0	NA	intron (NR_003716, intron 4 of 5)	intron (NR_003716, intron 4 of 5)	3641	NR_003716	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
143270	chr20	25195151	25196690	+	0	NA	promoter-TSS (NM_001322395)	promoter-TSS (NM_001322395)	7	NM_001322395	955		NM_001247	ENSG00000197586	ENTPD6	CD39L2|IL-6SAG|IL6ST2|NTPDase-6|dJ738P15.3	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding
108216	chr18	63163771	63163930	+	0	NA	intron (NM_000633, intron 2 of 2)	MIR|SINE|MIR	155919	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
109699	chr19	1054101	1054430	+	0	NA	exon (NM_019112, exon 27 of 47)	exon (NM_019112, exon 27 of 47)	-11694	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
51960	chr12	53756801	53757600	+	0	NA	promoter-TSS (NR_104332)	promoter-TSS (NR_104332)	-166	NR_104332	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
69181	chr14	92651001	92653600	+	0	NA	exon (NM_001319987, exon 5 of 9)	exon (NM_001319987, exon 5 of 9)	76066	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
190112	chr5	177944001	177944980	+	0	NA	intron (NR_149047, intron 1 of 3)	CpG	4963	NR_149047	100128340		NR_149047		LOC100128340	-	uncharacterized LOC100128340	ncRNA
227702	chr9	93024151	93024600	+	0	NA	intron (NM_001369951, intron 14 of 17)	intron (NM_001369951, intron 14 of 17)	-9431	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
162259	chr3	47290401	47290600	+	0	NA	intron (NM_025010, intron 1 of 9)	AluJo|SINE|Alu	7556	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
49578	chr12	26971501	26972430	+	0	NA	3' UTR (NM_016551, exon 12 of 12)	3' UTR (NM_016551, exon 12 of 12)	33495	NM_015633	26127		NM_015633	ENSG00000111790	FGFR1OP2	HSPC123-like|WIT3.0	FGFR1 oncogene partner 2	protein-coding
82445	chr16	16355751	16355850	+	0	NA	intron (NR_146336, intron 20 of 34)	intron (NR_146336, intron 20 of 34)	-13076	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
146333	chr20	49234821	49235400	+	0	NA	intron (NM_017895, intron 12 of 20)	intron (NM_017895, intron 12 of 20)	15694	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
210603	chr7	100427471	100428600	+	0	NA	promoter-TSS (NM_001194991)	promoter-TSS (NM_001194991)	668	NM_001258008	55063		NM_017984	ENSG00000078487	ZCWPW1	ZCW1	zinc finger CW-type and PWWP domain containing 1	protein-coding
123809	chr19	55166601	55167530	+	0	NA	promoter-TSS (NM_001256714)	promoter-TSS (NM_001256714)	-343	NM_001256714	352909		NM_178837	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	dynein axonemal assembly factor 3	protein-coding
38049	chr11	35163641	35164400	+	0	NA	intron (NM_001202557, intron 1 of 8)	MIRb|SINE|MIR	1070	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
813	chr1	1559421	1559680	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	15313	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
112786	chr19	7478101	7478800	+	0	NA	intron (NM_080662, intron 3 of 4)	intron (NM_080662, intron 3 of 4)	10585	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
163367	chr3	50476371	50476730	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	27084	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
211506	chr7	105268051	105268500	+	0	NA	intron (NM_001350741, intron 2 of 16)	intron (NM_001350741, intron 2 of 16)	802	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
9005	chr1	44719071	44719750	+	0	NA	intron (NM_001145636, intron 6 of 11)	intron (NM_001145636, intron 6 of 11)	2491	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
173769	chr4	17336421	17337180	+	0	NA	Intergenic	Intergenic	-15918	NR_145770	109616994		NR_145770	ENSG00000206780	SNORA75B	-	small nucleolar RNA, H/ACA box 75B	snoRNA
4290	chr1	19881851	19883350	+	0	NA	exon (NM_015207, exon 1 of 8)	exon (NM_015207, exon 1 of 8)	205	NM_015207	23252		NM_015207	ENSG00000169914	OTUD3	DUBA4	OTU deubiquitinase 3	protein-coding
204181	chr7	2471471	2471830	+	0	NA	Intergenic	Intergenic	4733	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
91173	chr17	3800601	3801280	+	0	NA	intron (NM_002208, intron 1 of 30)	intron (NM_002208, intron 1 of 30)	248	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
46556	chr11	128485601	128486130	+	0	NA	intron (NM_001143820, intron 6 of 9)	intron (NM_001143820, intron 6 of 9)	36445	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
235842	chrX	49878721	49880080	+	0	NA	promoter-TSS (NM_001145073)	promoter-TSS (NM_001145073)	-44	NR_026742	158572		NM_001025449	ENSG00000234390	USP27X-DT	USP27X-AS1	USP27X divergent transcript	ncRNA
76857	chr15	77902771	77903330	+	0	NA	Intergenic	Intergenic	23796	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
179674	chr4	190020371	190020530	+	0	NA	Intergenic	Intergenic	6806	NM_001005217	448831		NM_001005217	ENSG00000205097	FRG2	FRG2A	FSHD region gene 2	protein-coding
155637	chr22	38953071	38953430	+	0	NA	Intergenic	Intergenic	-4272	NM_001193289	100913187		NM_001193289		APOBEC3A_B	A3A|APOBEC3A	APOBEC3A and APOBEC3B deletion hybrid	protein-coding
107836	chr18	54250821	54251250	+	0	NA	Intergenic	(ACTTAA)n|Simple_repeat|Simple_repeat	-18444	NR_147257	11201		NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
210953	chr7	101358671	101358830	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-4070	NM_133457	136227		NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen type XXVI alpha 1 chain	protein-coding
71089	chr14	104868901	104869100	+	0	NA	intron (NM_001112726, intron 2 of 18)	intron (NM_001112726, intron 2 of 18)	3686	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
140699	chr2	234294871	234295030	+	0	NA	Intergenic	Intergenic	159645	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
75081	chr15	64386401	64386680	+	0	NA	intron (NR_109934, intron 1 of 3)	AluJb|SINE|Alu	1147	NR_109934	9768		NM_014736	ENSG00000166803	PCLAF	KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF	PCNA clamp associated factor	protein-coding
69888	chr14	99387701	99388300	+	0	NA	Intergenic	Intergenic	92859	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
222935	chr8	143020471	143021230	+	0	NA	intron (NM_001127213, intron 1 of 3).2	intron (NM_001127213, intron 1 of 3).2	2321	NM_002346	4061		NM_002346	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	lymphocyte antigen 6 family member E	protein-coding
217010	chr8	23174271	23174430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-10323	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
83259	chr16	23948351	23949400	+	0	NA	intron (NM_212535, intron 2 of 16)	MIR|SINE|MIR	112892	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
107511	chr18	47937151	47937350	+	0	NA	Intergenic	LTR16D|LTR|ERVL	-6104	NM_001135937	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
128441	chr2	55581221	55581730	+	0	NA	intron (NM_020463, intron 8 of 14)	intron (NM_020463, intron 8 of 14)	36147	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
117978	chr19	33393121	33393380	+	0	NA	intron (NM_000285, intron 12 of 14)	G-rich|Low_complexity|Low_complexity	18726	NM_001252296	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
102442	chr17	75686451	75686950	+	0	NA	intron (NR_126036, intron 3 of 9)	intron (NR_126036, intron 3 of 9)	19362	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
11787	chr1	92490521	92490780	+	0	NA	Intergenic	Intergenic	-3725	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
6211	chr1	27476101	27476330	+	0	NA	intron (NM_006990, intron 1 of 8)	MSTB|LTR|ERVL-MaLR	13952	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
8847	chr1	43360971	43361130	+	0	NA	intron (NM_001255, intron 8 of 10)	intron (NM_001255, intron 8 of 10)	2069	NM_001255	991		NM_001255	ENSG00000117399	CDC20	CDC20A|OOMD14|OZEMA14|bA276H19.3|p55CDC	cell division cycle 20	protein-coding
121782	chr19	47780301	47780950	+	0	NA	intron (NM_003009, intron 1 of 5)	intron (NM_003009, intron 1 of 5)	1922	NM_003009	6415		NM_003009	ENSG00000178980	SELENOW	SEPW1|selW	selenoprotein W	protein-coding
238664	chrX	154024321	154024700	+	0	NA	3' UTR (NM_001316337, exon 5 of 5)	3' UTR (NM_001316337, exon 5 of 5)	-4521	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
144691	chr20	36457951	36458350	+	0	NA	intron (NM_001365621, intron 7 of 12)	L2a|LINE|L2	-3318	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
215272	chr7	157008751	157009080	+	0	NA	intron (NM_005515, intron 1 of 2)	CpG	520	NM_001165255	3110		NM_005515	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
101663	chr17	68295021	68295300	+	0	NA	intron (NM_001352901, intron 1 of 11)	intron (NM_001352901, intron 1 of 11)	3025	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
39172	chr11	57349701	57350430	+	0	NA	intron (NM_002559, intron 7 of 11)	CpG	11713	NM_002559	5024		NM_002559	ENSG00000109991	P2RX3	P2X3	purinergic receptor P2X 3	protein-coding
179120	chr4	168884351	168884450	+	0	NA	intron (NM_001166110, intron 2 of 11)	L2a|LINE|L2	52305	NM_001367570	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
100566	chr17	62720321	62720730	+	0	NA	intron (NM_001288779, intron 9 of 11)	L1MCa|LINE|L1	14319	NR_147886	105371855		NR_147886	ENSG00000265702	LOC105371855	-	uncharacterized LOC105371855	ncRNA
112264	chr19	5796701	5796900	+	0	NA	Intergenic	AluSg|SINE|Alu	-5637	NM_001161619	56931		NM_020175	ENSG00000141994	DUS3L	DUS3	dihydrouridine synthase 3 like	protein-coding
117586	chr19	21603521	21603930	+	0	NA	Intergenic	HERV1_I-int|LTR|ERV1	-45943	NR_144514	400682		NR_144514		LOC400682	-	zinc finger protein 100-like	pseudo
93540	chr17	19052171	19052850	+	0	NA	Intergenic	L1M4b|LINE|L1	-5553	NM_001330148	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
118000	chr19	33903151	33903250	+	0	NA	Intergenic	LTR9D|LTR|ERV1	106330	NM_001129994	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
208501	chr7	69412751	69412850	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	184824	NR_148926	100507468		NR_108105	ENSG00000234215	CT66	-	cancer/testis associated transcript 66	ncRNA
150308	chr21	42001871	42002050	+	0	NA	intron (NM_020727, intron 1 of 1)	intron (NM_020727, intron 1 of 1)	-7234	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
222502	chr8	140508371	140508830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2722	NM_017444	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
163861	chr3	52492071	52492730	+	0	NA	exon (NM_007184, exon 21 of 21)	exon (NM_007184, exon 21 of 21)	-2938	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
136368	chr2	176099951	176100550	+	0	NA	exon (NM_021193, exon 1 of 2)	exon (NM_021193, exon 1 of 2)	455	NM_021193	3238		NM_021193	ENSG00000170178	HOXD12	HOX4H	homeobox D12	protein-coding
83779	chr16	28741551	28742180	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-10570	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
77004	chr15	78450671	78450830	+	0	NA	intron (NM_001320942, intron 2 of 21)	intron (NM_001320942, intron 2 of 21)	12329	NM_001320942	3658		NM_004136	ENSG00000136381	IREB2	ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA	iron responsive element binding protein 2	protein-coding
102711	chr17	76176901	76177100	+	0	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	-35755	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
128712	chr2	61694561	61695680	+	0	NA	Intergenic	Intergenic	-156764	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
13724	chr1	116800371	116800980	+	0	NA	Intergenic	Intergenic	46245	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
17526	chr1	156773571	156774630	+	0	NA	intron (NM_005973, intron 1 of 6)	L1MB4|LINE|L1	6565	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
214116	chr7	144188251	144189350	+	0	NA	intron (NM_001368318, intron 1 of 1)	intron (NM_001368318, intron 1 of 1)	5345	NM_198495	100128553		NM_198495	ENSG00000288784	CTAGE4	cTAGE-4	CTAGE family member 4	protein-coding
56698	chr12	120084701	120085250	+	0	NA	intron (NR_147894, intron 7 of 8)	intron (NR_147894, intron 7 of 8)	31778	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
89499	chr16	89153951	89154050	+	0	NA	intron (NR_147928, intron 11 of 11)	intron (NR_147928, intron 11 of 11)	-5220	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
130187	chr2	84290651	84290750	+	0	NA	promoter-TSS (NR_003663)	promoter-TSS (NR_003663)	18	NR_003663	388965		NM_001013648		FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
114610	chr19	12964301	12965950	+	0	NA	Intergenic	L2|LINE|L2	-4493	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
154690	chr22	36380871	36381030	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	7017	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
200189	chr6	130885321	130885830	+	0	NA	intron (NM_001350306, intron 11 of 17)	intron (NM_001350306, intron 11 of 17)	58169	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
7587	chr1	35185221	35185630	+	0	NA	intron (NM_005066, intron 9 of 9)	intron (NM_005066, intron 9 of 9)	7720	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
217169	chr8	26299071	26299230	+	0	NA	intron (NM_002717, intron 2 of 9)	AluJb|SINE|Alu	5934	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
118281	chr19	35280721	35281450	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-1443	NM_021175	57817		NM_021175	ENSG00000105697	HAMP	HEPC|HFE2B|LEAP1|PLTR	hepcidin antimicrobial peptide	protein-coding
60485	chr13	41262871	41263980	+	0	NA	5' UTR (NM_001354073, exon 4 of 15)	5' UTR (NM_001354073, exon 4 of 15)	151	NM_004294	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
154946	chr22	37238001	37239580	+	0	NA	intron (NM_002872, intron 2 of 6)	intron (NM_002872, intron 2 of 6)	5479	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
25654	chr10	8334371	8334530	+	0	NA	Intergenic	AluSz|SINE|Alu	-66145	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
37696	chr11	28109251	28109350	+	0	NA	intron (NM_001297775, intron 1 of 6)	intron (NM_001297775, intron 1 of 6)	912	NM_152636	196074		NM_152636	ENSG00000169519	METTL15	METT5D1	methyltransferase 15, mitochondrial 12S rRNA N4-cytidine	protein-coding
163955	chr3	52898501	52898700	+	0	NA	Intergenic	Intergenic	-1052	NM_001198974	100526772		NM_001198974	ENSG00000248592	STIMATE-MUSTN1	TMEM110-MUSTN1	STIMATE-MUSTN1 readthrough	protein-coding
207206	chr7	43643901	43644530	+	0	NA	intron (NR_146940, intron 3 of 6)	intron (NR_146940, intron 3 of 6)	61107	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
3470	chr1	15953551	15954350	+	0	NA	intron (NM_001324138, intron 2 of 14)	intron (NM_001324138, intron 2 of 14)	22151	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
196402	chr6	43331721	43332180	+	0	NA	Intergenic	Intergenic	-23124	NM_206922	401262		NM_206922	ENSG00000146215	CRIP3	CRP-3|TLP|TLP-A|h6LIMo	cysteine rich protein 3	protein-coding
232681	chr9	136519671	136519830	+	0	NA	promoter-TSS (NR_039820)	promoter-TSS (NR_039820)	-124	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
149566	chr21	33231701	33232200	+	0	NA	intron (NM_001385055, intron 1 of 9)	AluSz|SINE|Alu	2012	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
141290	chr2	240233061	240234730	+	0	NA	Intergenic	Intergenic	-93237	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
101764	chr17	72726671	72727200	+	0	NA	intron (NM_001352691, intron 8 of 10)	intron (NM_001352691, intron 8 of 10)	-86463	NR_033876	400619		NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
238763	chrX	154353471	154354080	+	0	NA	intron (NM_001110556, intron 35 of 47)	intron (NM_001110556, intron 35 of 47)	20859	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
16900	chr1	155868521	155868780	+	0	NA	exon (NM_152280, exon 2 of 4)	exon (NM_152280, exon 2 of 4)	9083	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
67421	chr14	70359151	70360130	+	0	NA	promoter-TSS (NM_001204090)	promoter-TSS (NM_001204090)	43	NM_001204090	51241		NM_016468	ENSG00000133983	COX16	C14orf112|HSPC203|MC4DN22|hCOX16	cytochrome c oxidase assembly factor COX16	protein-coding
223239	chr8	143616171	143616330	+	0	NA	intron (NM_003313, intron 2 of 10)	intron (NM_003313, intron 2 of 10)	1299	NM_003313	7264		NM_003313	ENSG00000104522	GFUS	FX|P35B|SDR4E1|TSTA3	GDP-L-fucose synthase	protein-coding
163605	chr3	51988121	51989230	+	0	NA	intron (NM_001316331, intron 15 of 16)	(CCCTCCT)n|Simple_repeat|Simple_repeat	5140	NM_000666	95		NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
151291	chr21	45509901	45510100	+	0	NA	intron (NM_001379500, intron 39 of 41)	CpG-18580	24756	NM_001205207	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
33345	chr10	117131371	117131530	+	0	NA	3' UTR (NM_199131, exon 4 of 4)	3' UTR (NM_199131, exon 4 of 4)	-4864	NM_001258300	57698		NM_018330	ENSG00000187164	SHTN1	KIAA1598|shootin-1	shootin 1	protein-coding
111211	chr19	3481421	3482250	+	0	NA	Intergenic	CpG	-1310	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
57152	chr12	121255501	121256230	+	0	NA	intron (NM_172215, intron 7 of 15)	intron (NM_172215, intron 7 of 15)	18720	NM_001270486	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
189468	chr5	173060921	173061430	+	0	NA	intron (NM_001168393, intron 1 of 3)	AluSg|SINE|Alu	4823	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
212067	chr7	115005971	115006530	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	-72708	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
224759	chr9	21968151	21968680	+	0	NA	TTS (NR_024274)	TTS (NR_024274)	1276	NR_024274	51198		NM_016349		CDKN2A-AS1	C9orf53|CDKN2A-DT|bA149I2.3	CDKN2A antisense RNA 1	ncRNA
28927	chr10	63189751	63190250	+	0	NA	intron (NM_001322258, intron 16 of 24)	AluSx|SINE|Alu	56672	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
73194	chr15	41509671	41510030	+	0	NA	intron (NM_206961, intron 6 of 18)	AluSg|SINE|Alu	3977	NM_002344	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
191755	chr6	13924371	13925480	+	0	NA	promoter-TSS (NM_152737)	promoter-TSS (NM_152737)	-27	NM_152737	221687		NM_152737	ENSG00000180537	RNF182	-	ring finger protein 182	protein-coding
59167	chr13	21638151	21638500	+	0	NA	Intergenic	Intergenic	-32748	NM_002010	2254		NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
34821	chr11	293221	294200	+	0	NA	exon (NM_025092, exon 10 of 14)	exon (NM_025092, exon 10 of 14)	4584	NM_025092	80162		NM_025092	ENSG00000142102	PGGHG	ATHL1	protein-glucosylgalactosylhydroxylysine glucosidase	protein-coding
176821	chr4	102554671	102555130	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-52414	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
96562	chr17	40444771	40445850	+	0	NA	intron (NM_001552, intron 1 of 3)	(TGTTTC)n|Simple_repeat|Simple_repeat	1860	NM_001552	3487		NM_001552	ENSG00000141753	IGFBP4	BP-4|HT29-IGFBP|IBP4|IGFBP-4	insulin like growth factor binding protein 4	protein-coding
70040	chr14	100110701	100111280	+	0	NA	intron (NM_016337, intron 3 of 13)	intron (NM_016337, intron 3 of 13)	1335	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
149598	chr21	33319801	33320500	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4245	NM_001384504	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
193183	chr6	29725451	29727100	+	0	NA	TTS (NR_026973).2	TTS (NR_026973).2	2841	NM_001098478	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
68827	chr14	91272651	91272750	+	0	NA	exon (NM_001080414, exon 30 of 30)	exon (NM_001080414, exon 30 of 30)	-18820	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
209018	chr7	74371251	74371350	+	0	NA	intron (NM_032421, intron 8 of 15)	intron (NM_032421, intron 8 of 15)	81893	NM_003388	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
13212	chr1	112643901	112644300	+	0	NA	intron (NM_006135, intron 1 of 9)	AluSz|SINE|Alu	24268	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
90706	chr17	1783301	1783500	+	0	NA	exon (NM_052928, exon 9 of 11)	exon (NM_052928, exon 9 of 11)	11729	NM_001329905	5176		NM_002615	ENSG00000132386	SERPINF1	EPC-1|OI12|OI6|PEDF|PIG35	serpin family F member 1	protein-coding
157672	chr22	46282401	46282800	+	0	NA	intron (NM_017931, intron 7 of 13)	intron (NM_017931, intron 7 of 13)	14060	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
213253	chr7	134431951	134433030	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	26610	NM_001628	231		NM_001628	ENSG00000085662	AKR1B1	ADR|ALDR1|ALR2|AR	aldo-keto reductase family 1 member B	protein-coding
91008	chr17	2789501	2789950	+	0	NA	intron (NM_001330058, intron 1 of 24)	AluSx|SINE|Alu	-6713	NM_001100398	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
195823	chr6	41298801	41299600	+	0	NA	Intergenic	L1PA15|LINE|L1	-12455	NR_136332	54210		NM_018643	ENSG00000124731	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
55263	chr12	102421901	102422180	+	0	NA	intron (NM_000618, intron 2 of 3)	intron (NM_000618, intron 2 of 3)	56510	NM_001111284	3479		NM_000618	ENSG00000017427	IGF1	IGF|IGF-I|IGFI|MGF	insulin like growth factor 1	protein-coding
28674	chr10	60649701	60650300	+	0	NA	intron (NM_001204403, intron 1 of 43)	MLT1I|LTR|ERVL-MaLR	-77044	NM_001204404	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
109970	chr19	1394101	1394550	+	0	NA	intron (NM_024407, intron 7 of 7)	intron (NM_024407, intron 7 of 7)	7217	NM_138924	2593		NM_000156	ENSG00000130005	GAMT	CCDS2|HEL-S-20|PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
52340	chr12	54992101	54992480	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-7528	NM_001136030	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
125175	chr2	10073701	10074150	+	0	NA	intron (NM_001037160, intron 1 of 2)	intron (NM_001037160, intron 1 of 2)	6486	NM_001037160	192668		NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
203728	chr7	1126171	1126330	+	0	NA	intron (NM_001350970, intron 2 of 2)	AluY|SINE|Alu	11997	NM_001318252	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
137085	chr2	190923871	190924030	+	0	NA	exon (NM_001256310, exon 10 of 15)	exon (NM_001256310, exon 10 of 15)	43129	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
28715	chr10	61846921	61847180	+	0	NA	Intergenic	L1MC5|LINE|L1	-54649	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
196174	chr6	42572101	42572930	+	0	NA	intron (NM_001363705, intron 1 of 46)	intron (NM_001363705, intron 1 of 46)	8486	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
214733	chr7	151043151	151043950	+	0	NA	intron (NM_001282291, intron 15 of 16)	G-rich|Low_complexity|Low_complexity	-4742	NM_020322	9311		NM_004769	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid sensing ion channel subunit 3	protein-coding
20348	chr1	197903971	197904850	+	0	NA	intron (NM_001024594, intron 1 of 2)	intron (NM_001024594, intron 1 of 2)	1780	NM_001024594	388722		NM_001024594	ENSG00000203724	C1orf53	-	chromosome 1 open reading frame 53	protein-coding
189496	chr5	173230421	173230680	+	0	NA	Intergenic	Intergenic	4656	NM_001166176	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
174157	chr4	36254451	36254850	+	0	NA	intron (NR_122079, intron 3 of 4)	L2c|LINE|L2	-1868	NR_122080	439933		NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
34128	chr10	128018321	128018780	+	0	NA	intron (NM_001323354, intron 1 of 19)	intron (NM_001323354, intron 1 of 19)	20403	NM_001323354	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
36392	chr11	4044251	4044900	+	0	NA	intron (NM_001382570, intron 3 of 9)	intron (NM_001382570, intron 3 of 9)	-50110	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
224931	chr9	33003071	33003230	+	0	NA	intron (NM_001369001, intron 1 of 6)	intron (NM_001369001, intron 1 of 6)	-1509	NM_001195251	54840		NM_017692	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
61584	chr13	72758171	72758330	+	0	NA	3' UTR (NM_001322349, exon 22 of 22)	3' UTR (NM_001322349, exon 22 of 22)	23650	NM_001322349	22894		NM_014953	ENSG00000083520	DIS3	2810028N01Rik|EXOSC11|KIAA1008|RRP44|dis3p	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding
96291	chr17	39939271	39940580	+	0	NA	Intergenic	Intergenic	-1549	NM_001195545	100505591		NM_001195545	ENSG00000204913	LRRC3C	-	leucine rich repeat containing 3C	protein-coding
189837	chr5	177094601	177094900	+	0	NA	intron (NM_022963, intron 9 of 15)	intron (NM_022963, intron 9 of 15)	5200	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
35468	chr11	1470101	1470700	+	0	NA	exon (NM_001172223, exon 5 of 5)	exon (NM_001172223, exon 5 of 5)	10486	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
226070	chr9	61867371	61868280	+	0	NA	intron (NR_121606, intron 2 of 2)	intron (NR_121606, intron 2 of 2)	1313	NR_121606	102723709		NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
26566	chr10	21725571	21725730	+	0	NA	intron (NR_136736, intron 17 of 25)	AluSq2|SINE|Alu	191418	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
7885	chr1	36465471	36465780	+	0	NA	TTS (NM_000760)	TTS (NM_000760)	-1241	NM_031280	64960		NM_031280	ENSG00000116898	MRPS15	DC37|MPR-S15|RPMS15|S15mt|uS15m	mitochondrial ribosomal protein S15	protein-coding
150971	chr21	44325221	44325600	+	0	NA	intron (NM_001002021, intron 22 of 24)	intron (NM_001002021, intron 22 of 24)	12928	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
34783	chr11	214221	215030	+	0	NA	TTS (NM_012239)	TTS (NM_012239)	5289	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
201537	chr6	149166521	149167050	+	0	NA	Intergenic	Intergenic	-51139	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
131539	chr2	96640171	96640330	+	0	NA	Intergenic	L1M5|LINE|L1	-1938	NM_001349257	55683		NM_017991	ENSG00000114982	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
74940	chr15	63764701	63765200	+	0	NA	intron (NM_003922, intron 2 of 77)	AluJo|SINE|Alu	68998	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
218311	chr8	42648951	42649050	+	0	NA	Intergenic	AluY|SINE|Alu	-48366	NM_000749	1142		NM_000749	ENSG00000147432	CHRNB3	-	cholinergic receptor nicotinic beta 3 subunit	protein-coding
100598	chr17	63442371	63443280	+	0	NA	intron (NM_001915, intron 1 of 5)	intron (NM_001915, intron 1 of 5)	-1998	NM_001017917	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
126918	chr2	32701851	32702150	+	0	NA	intron (NM_001193509, intron 9 of 19)	AluJr|SINE|Alu	66745	NR_039922	100616219		NR_039922	ENSG00000265057	MIR4765	-	microRNA 4765	ncRNA
35100	chr11	636601	638600	+	0	NA	intron (NM_000797, intron 1 of 3)	CpG	331	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
12681	chr1	109463501	109463700	+	0	NA	Intergenic	AluSz|SINE|Alu	-2946	NM_001040709	284612		NM_198280	ENSG00000143028	SYPL2	MG29	synaptophysin like 2	protein-coding
117807	chr19	29941851	29943550	+	0	NA	intron (NR_045557, intron 1 of 9)	CpG	461	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
1961	chr1	6585421	6585880	+	0	NA	intron (NM_005341, intron 3 of 10)	intron (NM_005341, intron 3 of 10)	5656	NM_001278647	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
214634	chr7	150741021	150742000	+	0	NA	intron (NM_001303630, intron 4 of 4)	L2|LINE|L2	4162	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
133425	chr2	118993171	118993330	+	0	NA	exon (NM_006770, exon 16 of 17)	exon (NM_006770, exon 16 of 17)	51056	NM_006770	8685		NM_006770	ENSG00000019169	MARCO	SCARA2|SR-A6	macrophage receptor with collagenous structure	protein-coding
20702	chr1	200667551	200667650	+	0	NA	promoter-TSS (NM_001349800)	promoter-TSS (NM_001349800)	-660	NM_001349800	83479		NM_031306	ENSG00000118197	DDX59	OFD5|ZNHIT5	DEAD-box helicase 59	protein-coding
8545	chr1	41117271	41117450	+	0	NA	intron (NM_012236, intron 6 of 14)	LTR13|LTR|ERVK	44072	NM_001172222	22955		NM_012236	ENSG00000010803	SCMH1	Scml3	Scm polycomb group protein homolog 1	protein-coding
140970	chr2	237944921	237945180	+	0	NA	Intergenic	MER52A|LTR|ERV1	-21895	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
136396	chr2	176133521	176134130	+	0	NA	Intergenic	Intergenic	-2787	NR_148241	401021		NR_148241		LOC401021	-	uncharacterized LOC401021	ncRNA
41874	chr11	67237701	67237900	+	0	NA	intron (NM_012308, intron 12 of 20)	AluJr|SINE|Alu	-2214	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
211381	chr7	105010201	105010850	+	0	NA	TTS (NR_024586)	TTS (NR_024586)	3616	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
168936	chr3	152363371	152363730	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-22560	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
5464	chr1	25628771	25629750	+	0	NA	intron (NM_020379, intron 1 of 11)	L1PB3|LINE|L1	12469	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
80528	chr16	2764701	2765000	+	0	NA	exon (NM_016333, exon 11 of 15)	exon (NM_016333, exon 11 of 15)	12212	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
771	chr1	1519621	1520530	+	0	NA	intron (NM_018188, intron 5 of 15)	CpG	7545	NM_001170536	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
202185	chr6	156163401	156163600	+	0	NA	Intergenic	Intergenic	-215250	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
25333	chr10	6236471	6237280	+	0	NA	intron (NM_001363545, intron 14 of 14)	intron (NM_001363545, intron 14 of 14)	33943	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
169226	chr3	157130001	157131500	+	0	NA	Intergenic	Intergenic	-7748	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
94396	chr17	28966571	28966730	+	0	NA	intron (NM_178860, intron 4 of 16)	intron (NM_178860, intron 4 of 16)	-15132	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
47750	chr12	6533401	6533700	+	0	NA	promoter-TSS (NM_001357943)	promoter-TSS (NM_001357943)	-967	NR_152150	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
49813	chr12	31978901	31979530	+	0	NA	intron (NM_018169, intron 3 of 5)	AluY|SINE|Alu	19800	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
31288	chr10	92570521	92570980	+	0	NA	intron (NM_001322795, intron 1 of 25)	AluJo|SINE|Alu	2756	NM_001322796	3416		NM_004969	ENSG00000119912	IDE	INSULYSIN	insulin degrading enzyme	protein-coding
234406	chrX	16763251	16763780	+	0	NA	non-coding (NR_033181, exon 9 of 9)	non-coding (NR_033181, exon 9 of 9)	-22917	NM_001168683	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
135230	chr2	159290301	159290850	+	0	NA	Intergenic	LTR86B1|LTR|ERVL	-3872	NM_001330280	151525		NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
45642	chr11	118995751	118996050	+	0	NA	Intergenic	AluSx|SINE|Alu	-2238	NR_104051	338657		NM_198489	ENSG00000186166	CENATAC	CCDC84|DLNB14|MVA4	centrosomal AT-AC splicing factor	protein-coding
80166	chr16	2111821	2112350	+	0	NA	intron (NM_001009944, intron 14 of 45)	CpG-9075	-5332	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
26821	chr10	24464371	24464530	+	0	NA	intron (NM_001321681, intron 1 of 13)	intron (NM_001321681, intron 1 of 13)	-2081	NM_001282770	56243		NM_019590	ENSG00000120549	KIAA1217	ETL4|SKT	KIAA1217	protein-coding
18467	chr1	161606001	161607550	+	0	NA	non-coding (NR_024151, exon 1 of 1)	non-coding (NR_024151, exon 1 of 1)	716	NR_024151	3311		NR_024151	ENSG00000225217	HSPA7	HSP70B	heat shock protein family A (Hsp70) member 7 (pseudogene)	pseudo
236704	chrX	77841751	77841850	+	0	NA	intron (NM_032121, intron 7 of 9)	AluJb|SINE|Alu	53635	NM_001367916	84061		NM_032121	ENSG00000102158	MAGT1	CDG1CC|IAP|MRX95|OST3B|PRO0756|SLC58A1|XMEN|bA217H1.1	magnesium transporter 1	protein-coding
169157	chr3	156553951	156554050	+	0	NA	5' UTR (NM_001308205, exon 1 of 5)	5' UTR (NM_001308205, exon 1 of 5)	125	NM_001308205	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
200291	chr6	132812901	132813600	+	0	NA	Intergenic	Intergenic	-1319	NM_001016	6206		NM_001016	ENSG00000112306	RPS12	S12|eS12	ribosomal protein S12	protein-coding
78248	chr15	90780901	90781100	+	0	NA	intron (NM_001287248, intron 12 of 21)	MER2|DNA|TcMar-Tigger	63654	NM_001287248	641		NM_000057	ENSG00000197299	BLM	BS|MGRISCE1|RECQ2|RECQL2|RECQL3	BLM RecQ like helicase	protein-coding
194993	chr6	35388221	35388480	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	45792	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
7306	chr1	32482951	32483050	+	0	NA	intron (NM_001145720, intron 3 of 3)	intron (NM_001145720, intron 3 of 3)	17928	NM_001145720	728116		NM_001145720	ENSG00000273274	ZBTB8B	ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
218949	chr8	60997801	60998410	+	0	NA	Intergenic	Intergenic	-30357	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
59855	chr13	30572071	30572230	+	0	NA	intron (NM_001370340, intron 1 of 4)	intron (NM_001370340, intron 1 of 4)	45437	NM_001370340	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
35931	chr11	2459471	2460030	+	0	NA	intron (NM_000218, intron 1 of 15)	intron (NM_000218, intron 1 of 15)	-1704	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
31939	chr10	100651121	100651380	+	0	NA	Intergenic	Intergenic	-84146	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
30773	chr10	84338121	84338900	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	9921	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
26128	chr10	13718121	13718580	+	0	NA	intron (NM_018027, intron 12 of 24)	intron (NM_018027, intron 12 of 24)	-10783	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
67334	chr14	69642621	69642880	+	0	NA	intron (NM_014734, intron 1 of 5)	L1MEc|LINE|L1	31154	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
95519	chr17	36545401	36546680	+	0	NA	intron (NM_024835, intron 2 of 13)	intron (NM_024835, intron 2 of 13)	1121	NM_024835	79893		NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
91511	chr17	4949401	4951030	+	0	NA	promoter-TSS (NM_001374523)	promoter-TSS (NM_001374523)	-337	NM_001374524	2027		NM_001976	ENSG00000108515	ENO3	GSD13|MSE	enolase 3	protein-coding
55966	chr12	110073071	110074350	+	0	NA	promoter-TSS (NR_148514)	promoter-TSS (NR_148514)	-71	NR_148515	400073		NM_207435	ENSG00000174456	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
196440	chr6	43479721	43479980	+	0	NA	intron (NM_001350570, intron 3 of 10)	AluSc|SINE|Alu	2280	NM_001350569	93643		NM_080604	ENSG00000137221	TJAP1	PILT|TJP4	tight junction associated protein 1	protein-coding
137793	chr2	199861121	199861450	+	0	NA	Intergenic	Intergenic	-10112	NM_001350854	348751		NM_001350853	ENSG00000226124	FTCDNL1	FONG	formiminotransferase cyclodeaminase N-terminal like	protein-coding
54531	chr12	92126201	92126780	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	15223	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
2918	chr1	11711121	11711680	+	0	NA	intron (NM_198545, intron 3 of 6)	intron (NM_198545, intron 3 of 6)	19690	NM_198545	374946		NM_198545	ENSG00000162490	DRAXIN	AGPA3119|C1orf187|UNQ3119|neucrin	dorsal inhibitory axon guidance protein	protein-coding
24392	chr1	242147071	242147230	+	0	NA	intron (NM_001320272, intron 6 of 10)	L1ME1|LINE|L1	-148052	NM_001004343	440738		NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule associated protein 1 light chain 3 gamma	protein-coding
50810	chr12	49071601	49071800	+	0	NA	Intergenic	L2a|LINE|L2	-1721	NR_130123	121268		NM_144593	ENSG00000167550	RHEBL1	RHEBL1c	RHEB like 1	protein-coding
224320	chr9	6708051	6708350	+	0	NA	Intergenic	AluSx|SINE|Alu	-12663	NM_001146696	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
37875	chr11	33870421	33871080	+	0	NA	promoter-TSS (NM_001142316)	promoter-TSS (NM_001142316)	-872	NM_001142316	4005		NM_005574	ENSG00000135363	LMO2	LMO-2|RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
201308	chr6	144355201	144355600	+	0	NA	intron (NM_007124, intron 1 of 73)	AluJb|SINE|Alu	-50255	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
135384	chr2	160486601	160486800	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	7107	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
22818	chr1	224750951	224751150	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	134733	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
219210	chr8	66664751	66665550	+	0	NA	exon (NM_025054, exon 1 of 3)	exon (NM_025054, exon 1 of 3)	2081	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
26783	chr10	23093421	23093880	+	0	NA	Intergenic	L1ME1|LINE|L1	-1929	NM_012228	22921		NM_012228	ENSG00000148450	MSRB2	CBS-1|CBS1|CGI-131|MSRB|PILB	methionine sulfoxide reductase B2	protein-coding
118199	chr19	35138401	35139080	+	0	NA	promoter-TSS (NM_005031)	promoter-TSS (NM_005031)	-84	NM_021902	5348		NM_005031	ENSG00000266964	FXYD1	PLM	FXYD domain containing ion transport regulator 1	protein-coding
209494	chr7	76727501	76727700	+	0	NA	Intergenic	AluSz6|SINE|Alu	-100297	NM_152992	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
158119	chr22	50057301	50057730	+	0	NA	intron (NM_001350317, intron 1 of 13)	intron (NM_001350317, intron 1 of 13)	712	NM_001350317	164714		NM_001080447	ENSG00000138892	TTLL8	-	tubulin tyrosine ligase like 8	protein-coding
73689	chr15	44896151	44896250	+	0	NA	Intergenic	L1PA6|LINE|L1	-11506	NR_146394	653381		NR_146393	ENSG00000290387	SORD2P	SORD2	sorbitol dehydrogenase 2, pseudogene	pseudo
236953	chrX	101051351	101052650	+	0	NA	5' UTR (NM_024917, exon 1 of 14)	5' UTR (NM_024917, exon 1 of 14)	111	NM_024917	79979		NM_024917	ENSG00000188917	TRMT2B	CXorf34|dJ341D10.3	tRNA methyltransferase 2 homolog B	protein-coding
34566	chr10	133210501	133210700	+	0	NA	intron (NM_152643, intron 20 of 29)	(CCACC)n|Simple_repeat|Simple_repeat	-19617	NM_003577	8433		NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
182867	chr5	69794251	69794350	+	0	NA	Intergenic	AluYa5|SINE|Alu	-50369	NR_146391	653080		NR_146391		GUSBP16	-	GUSB pseudogene 16	pseudo
174226	chr4	37815801	37816630	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-10471	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
137694	chr2	197488351	197488850	+	0	NA	intron (NM_199440, intron 9 of 11)	AluSz|SINE|Alu	-1697	NR_132788	106635540		NR_132788		SNORA105B	-	small nucleolar RNA, H/ACA box 105B	snoRNA
151189	chr21	45084001	45084580	+	0	NA	intron (NM_001346688, intron 1 of 11)	intron (NM_001346688, intron 1 of 11)	9239	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
180737	chr5	31865501	31865700	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	70559	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
51483	chr12	52081121	52082050	+	0	NA	intron (NM_001369216, intron 1 of 2)	intron (NM_001369216, intron 1 of 2)	1881	NM_001369216	113523638		NM_001369216	ENSG00000284791	SMIM41	-	small integral membrane protein 41	protein-coding
22111	chr1	211678701	211679230	+	0	NA	intron (NR_148994, intron 2 of 3)	AluYm1|SINE|Alu	3203	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
10444	chr1	66253001	66253530	+	0	NA	intron (NM_001037340, intron 2 of 14)	intron (NM_001037340, intron 2 of 14)	-78843	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
205313	chr7	12221651	12221950	+	0	NA	intron (NM_001134232, intron 3 of 7)	L1MEc|LINE|L1	10506	NM_001134232	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
118042	chr19	34241501	34241780	+	0	NA	Intergenic	Intergenic	-12914	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
222540	chr8	140588601	140589750	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	46458	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
4272	chr1	19661451	19662350	+	0	NA	Intergenic	Intergenic	-2975	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
185469	chr5	131283121	131283900	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluSp|SINE|Alu	19457	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
236603	chrX	74133371	74133700	+	0	NA	intron (NR_028379, intron 5 of 6)	intron (NR_028379, intron 5 of 6)	84926	NR_030398	693122		NR_030398	ENSG00000202566	MIR421	MIRN421|hsa-mir-421	microRNA 421	ncRNA
189452	chr5	173003321	173003580	+	0	NA	intron (NM_003945, intron 2 of 3)	L2|LINE|L2	-17276	NR_002988	677841		NR_002988	ENSG00000212402	SNORA74B	U19-2	small nucleolar RNA, H/ACA box 74B	snoRNA
16838	chr1	155665521	155665780	+	0	NA	intron (NM_139119, intron 9 of 10)	AluJo|SINE|Alu	13605	NR_132762	106633810		NR_132762		SCARNA26A	-	small Cajal body-specific RNA 26A	ncRNA
119234	chr19	39470971	39471800	+	0	NA	exon (NM_001319991, exon 18 of 29)	exon (NM_001319991, exon 18 of 29)	3163	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
67653	chr14	73080051	73080750	+	0	NA	intron (NM_021239, intron 4 of 18)	AluY|SINE|Alu	21866	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
147360	chr20	58388821	58390330	+	0	NA	intron (NM_001195677, intron 1 of 2)	CpG	346	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
224577	chr9	20041751	20042330	+	0	NA	Intergenic	Intergenic	-253003	NM_001193288	25769		NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
89318	chr16	88729371	88729830	+	0	NA	intron (NM_001142864, intron 22 of 50)	intron (NM_001142864, intron 22 of 50)	-1580	NR_103774	100289580		NM_207451		HSALR1	-	HSP90AB1 associated lncRNA 1	ncRNA
118924	chr19	38736801	38737700	+	0	NA	exon (NM_144691, exon 10 of 21)	exon (NM_144691, exon 10 of 21)	7224	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
42108	chr11	67589051	67589150	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	5288	NM_000852	2950		NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
53886	chr12	70354821	70355080	+	0	NA	TTS (NM_001199303)	TTS (NM_001199303)	-11340	NM_014505	27345		NM_014505	ENSG00000135643	KCNMB4	-	potassium calcium-activated channel subfamily M regulatory beta subunit 4	protein-coding
211518	chr7	105308551	105308650	+	0	NA	intron (NM_001350742, intron 2 of 16)	intron (NM_001350742, intron 2 of 16)	-9821	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
99535	chr17	50356721	50357550	+	0	NA	exon (NM_022167, exon 9 of 11)	exon (NM_022167, exon 9 of 11)	11009	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
164120	chr3	56696201	56696400	+	0	NA	Intergenic	L1MB7|LINE|L1	-13035	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
145599	chr20	44611551	44611850	+	0	NA	intron (NM_001281444, intron 4 of 5)	AluY|SINE|Alu	29121	NM_001281445	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
201971	chr6	152186141	152188000	+	0	NA	intron (NM_033071, intron 127 of 145)	intron (NM_033071, intron 127 of 145)	-1692	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
42460	chr11	69637001	69637650	+	0	NA	Intergenic	CpG	-3831	NM_053056	595		NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
150537	chr21	42981071	42981380	+	0	NA	intron (NM_001320694, intron 1 of 10)	intron (NM_001320694, intron 1 of 10)	6663	NM_004571	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
64323	chr14	23633251	23633430	+	0	NA	intron (NM_001318835, intron 1 of 4)	intron (NM_001318835, intron 1 of 4)	-3024	NM_182908	10202		NM_005794	ENSG00000100867	DHRS2	HEP27|SDR25C1	dehydrogenase/reductase 2	protein-coding
46066	chr11	122744951	122745250	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	89378	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
184365	chr5	97163321	97164150	+	0	NA	intron (NM_018343, intron 9 of 9)	intron (NM_018343, intron 9 of 9)	19512	NM_018343	55781		NM_018343	ENSG00000058729	RIOK2	RIO2	RIO kinase 2	protein-coding
222273	chr8	133294251	133294350	+	0	NA	intron (NM_001374844, intron 1 of 15)	MIRb|SINE|MIR	2390	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
135017	chr2	154577151	154577250	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-119762	NR_161181	100144595		NR_161181	ENSG00000224675	GALNT13-AS1	-	GALNT13 antisense RNA 1	ncRNA
205019	chr7	6499901	6500100	+	0	NA	intron (NM_001145118, intron 20 of 21)	AluJr4|SINE|Alu	-15848	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
187204	chr5	140670651	140670950	+	0	NA	TTS (NM_194249)	TTS (NM_194249)	2776	NM_194249	373863		NM_194249	ENSG00000256453	DND1	RBMS4	DND microRNA-mediated repression inhibitor 1	protein-coding
16131	chr1	153659951	153660350	+	0	NA	intron (NR_052020, intron 2 of 2)	AluJb|SINE|Alu	1447	NM_012437	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
141864	chr20	652271	652430	+	0	NA	intron (NM_080725, intron 1 of 1)	intron (NM_080725, intron 1 of 1)	850	NM_080725	140809		NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
102622	chr17	76000121	76001430	+	0	NA	promoter-TSS (NM_001258)	promoter-TSS (NM_001258)	-131	NM_001258	1018		NM_001258	ENSG00000250506	CDK3	-	cyclin dependent kinase 3	protein-coding
128621	chr2	61195551	61196580	+	0	NA	intron (NM_014709, intron 75 of 79)	AluJb|SINE|Alu	18647	NR_152212	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
9056	chr1	44817551	44818290	+	0	NA	Intergenic	AluSz|SINE|Alu	9438	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
215503	chr7	158655771	158656400	+	0	NA	intron (NM_001281932, intron 20 of 28)	intron (NM_001281932, intron 20 of 28)	48719	NM_001281932	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
89582	chr16	89269901	89271230	+	0	NA	intron (NM_013275, intron 12 of 12)	intron (NM_013275, intron 12 of 12)	-25563	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
157361	chr22	44697201	44698530	+	0	NA	intron (NM_001198721, intron 2 of 9)	MIRb|SINE|MIR	-4333	NM_181334	553158		NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
62918	chr13	111116221	111116480	+	0	NA	promoter-TSS (NR_046667)	promoter-TSS (NR_046667)	-672	NR_046667	100874238		NR_046667	ENSG00000235875	ARHGEF7-AS2	-	ARHGEF7 antisense RNA 2	ncRNA
42801	chr11	72795251	72796150	+	0	NA	Intergenic	AluY|SINE|Alu	-1995	NM_006645	10809		NM_006645	ENSG00000214530	STARD10	CGI-52|NY-CO-28|PCTP2|SDCCAG28	StAR related lipid transfer domain containing 10	protein-coding
64475	chr14	24273771	24274730	+	0	NA	Intergenic	Intergenic	-2623	NM_182836	5875		NM_004581	ENSG00000100949	RABGGTA	PTAR3	Rab geranylgeranyltransferase subunit alpha	protein-coding
218588	chr8	55865771	55866330	+	0	NA	Intergenic	AluJo|SINE|Alu	-13785	NM_002350	4067		NM_002350	ENSG00000254087	LYN	JTK8|SAIDV|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
42495	chr11	70203801	70205000	+	0	NA	intron (NM_003824, intron 1 of 1)	intron (NM_003824, intron 1 of 1)	1104	NM_003824	8772		NM_003824	ENSG00000168040	FADD	GIG3|IMD90|MORT1	Fas associated via death domain	protein-coding
178725	chr4	152839651	152839950	+	0	NA	intron (NM_001025593, intron 2 of 7)	L1PB1|LINE|L1	59846	NM_001025595	27236		NM_014447	ENSG00000164144	ARFIP1	HSU52521	ADP ribosylation factor interacting protein 1	protein-coding
17400	chr1	156625671	156626350	+	0	NA	TTS (NM_021817)	TTS (NM_021817)	-4082	NR_135113	101928177		NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
119380	chr19	40217971	40218880	+	0	NA	promoter-TSS (NM_152479)	promoter-TSS (NM_152479)	-26	NM_152479	148014		NM_152479	ENSG00000174521	TTC9B	-	tetratricopeptide repeat domain 9B	protein-coding
142536	chr20	5077651	5079130	+	0	NA	intron (NM_001330987, intron 3 of 3)	intron (NM_001330987, intron 3 of 3)	34686	NM_001009923	29058		NM_014145	ENSG00000089063	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
235214	chrX	41361751	41362600	+	0	NA	intron (NR_126093, intron 18 of 18)	AluSq2|SINE|Alu	28009	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
17168	chr1	156214451	156214830	+	0	NA	intron (NM_001199664, intron 1 of 4)	AluJo|SINE|Alu	1652	NM_001199653	11243		NM_007221	ENSG00000160783	PMF1	-	polyamine modulated factor 1	protein-coding
29103	chr10	68333651	68333750	+	0	NA	promoter-TSS (NM_022129)	promoter-TSS (NM_022129)	-772	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
172454	chr4	1985021	1985280	+	0	NA	intron (NM_005663, intron 7 of 10)	intron (NM_005663, intron 7 of 10)	1327	NR_030641	100126332		NR_030641	ENSG00000284587	MIR943	MIRN943|hsa-mir-943	microRNA 943	ncRNA
142811	chr20	16476051	16476150	+	0	NA	intron (NM_024704, intron 12 of 25)	intron (NM_024704, intron 12 of 25)	97348	NM_024704	55614		NM_024704	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
136352	chr2	176072821	176073330	+	0	NA	Intergenic	Intergenic	10887	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
94158	chr17	28365721	28366150	+	0	NA	promoter-TSS (NM_001080837)	promoter-TSS (NM_001080837)	-784	NM_001080837	645832		NM_001080837	ENSG00000274529	SEBOX	OG-9|OG9|OG9X	SEBOX homeobox	protein-coding
2670	chr1	10512951	10513580	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	38315	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
17861	chr1	159932401	159932800	+	0	NA	exon (NM_020789, exon 10 of 21)	exon (NM_020789, exon 10 of 21)	-7093	NM_003564	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
108208	chr18	63149321	63149580	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	170319	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
25207	chr10	5708551	5709150	+	0	NA	intron (NM_017782, intron 1 of 20)	AluJb|SINE|Alu	24012	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
182438	chr5	62296821	62297980	+	0	NA	Intergenic	Intergenic	-8762	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
219037	chr8	65667921	65668180	+	0	NA	intron (NM_014637, intron 1 of 7)	intron (NM_014637, intron 1 of 7)	-1823	NM_001145838	9650		NM_014637	ENSG00000066855	MTFR1	CHPPR|FAM54A2	mitochondrial fission regulator 1	protein-coding
167277	chr3	128624371	128624530	+	0	NA	intron (NM_002950, intron 8 of 9)	AluSc8|SINE|Alu	26368	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
105283	chr17	82480751	82481300	+	0	NA	intron (NM_031968, intron 6 of 11)	intron (NM_031968, intron 6 of 11)	22284	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
112890	chr19	7627321	7627580	+	0	NA	intron (NM_020196, intron 3 of 18)	intron (NM_020196, intron 3 of 18)	2095	NM_020196	56949		NM_020196	ENSG00000076924	XAB2	HCNP|HCRN|NTC90|SYF1	XPA binding protein 2	protein-coding
152810	chr22	21854771	21854930	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	12795	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
39330	chr11	59164021	59164280	+	0	NA	Intergenic	Intergenic	-7280	NM_001300727	23220		NM_015177	ENSG00000110042	DTX4	RNF155	deltex E3 ubiquitin ligase 4	protein-coding
3039	chr1	12146851	12147150	+	0	NA	Intergenic	L2c|LINE|L2	-19943	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
11545	chr1	91015271	91016580	+	0	NA	intron (NM_032186, intron 1 of 3)	MIRb|SINE|MIR	5583	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
5140	chr1	24899051	24899150	+	0	NA	TTS (NM_004350)	TTS (NM_004350)	20316	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
229357	chr9	120931301	120932680	+	0	NA	Intergenic	Intergenic	-2817	NM_001190945	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
105912	chr18	3446371	3446900	+	0	NA	promoter-TSS (NM_173207)	promoter-TSS (NM_173207)	-907	NM_173207	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
110431	chr19	1971371	1972400	+	0	NA	intron (NM_001319, intron 2 of 11)	AluY|SINE|Alu	-17336	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
94851	chr17	31499501	31499700	+	0	NA	intron (NM_001346748, intron 1 of 12)	AluSc5|SINE|Alu	11492	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
66921	chr14	65411251	65412000	+	0	NA	promoter-TSS (NM_178155)	promoter-TSS (NM_178155)	-238	NM_001371536	2530		NM_004480	ENSG00000033170	FUT8	CDGF|CDGF1	fucosyltransferase 8	protein-coding
142317	chr20	3667701	3668180	+	0	NA	TTS (NM_001282447)	TTS (NM_001282447)	-4541	NM_145762	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
184607	chr5	103271671	103272150	+	0	NA	intron (NM_001377288, intron 2 of 2)	intron (NM_001377288, intron 2 of 2)	8016	NM_001377288	90355		NM_033211	ENSG00000181751	MACIR	C5orf30	macrophage immunometabolism regulator	protein-coding
163486	chr3	50926821	50927080	+	0	NA	intron (NM_004947, intron 4 of 52)	L2a|LINE|L2	251870	NR_039950	100616138		NR_039950	ENSG00000272543	MIR4787	mir-4787	microRNA 4787	ncRNA
24022	chr1	235267571	235268780	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-59041	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
106065	chr18	9106821	9107080	+	0	NA	intron (NM_021074, intron 1 of 7)	MLT1D|LTR|ERVL-MaLR	4251	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
207218	chr7	43658151	43658250	+	0	NA	intron (NM_001371313, intron 1 of 8)	AluY|SINE|Alu	71323	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
27760	chr10	35225171	35225430	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-21725	NM_181698	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
90926	chr17	2604071	2604630	+	0	NA	intron (NM_000430, intron 1 of 10)	intron (NM_000430, intron 1 of 10)	10696	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
181087	chr5	36878951	36879250	+	0	NA	intron (NM_133433, intron 1 of 46)	intron (NM_133433, intron 1 of 46)	2331	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
93608	chr17	19143701	19143900	+	0	NA	intron (NM_001353418, intron 3 of 3)	L2a|LINE|L2	16211	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
75748	chr15	68298801	68299780	+	0	NA	3' UTR (NM_001004439, exon 30 of 30)	3' UTR (NM_001004439, exon 30 of 30)	21545	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
1646	chr1	3795801	3797150	+	0	NA	promoter-TSS (NM_020710)	promoter-TSS (NM_020710)	23	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
114439	chr19	12695101	12695430	+	0	NA	intron (NM_032301, intron 1 of 9)	intron (NM_032301, intron 1 of 9)	1366	NM_032301	84261		NM_032301	ENSG00000132004	FBXW9	Fbw9|MEC-15	F-box and WD repeat domain containing 9	protein-coding
58586	chr12	132453451	132453750	+	0	NA	Intergenic	Intergenic	-36551	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
103141	chr17	77401871	77402380	+	0	NA	exon (NM_001293695, exon 2 of 11)	exon (NM_001293695, exon 2 of 11)	-2952	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
139285	chr2	219508221	219508480	+	0	NA	Intergenic	Intergenic	-6132	NM_182847	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
164773	chr3	69106701	69107900	+	0	NA	3' UTR (NM_001304418, exon 4 of 4)	3' UTR (NM_001304418, exon 4 of 4)	15295	NM_198271	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
147736	chr20	62397871	62398980	+	0	NA	intron (NM_031215, intron 1 of 9)	intron (NM_031215, intron 1 of 9)	8858	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
188017	chr5	149561901	149562100	+	0	NA	Intergenic	Intergenic	-10561	NM_001025105	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
184957	chr5	113197771	113197930	+	0	NA	intron (NM_001085377, intron 3 of 18)	MIR|SINE|MIR	97088	NM_002387	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
229851	chr9	126326321	126327980	+	0	NA	intron (NM_033446, intron 1 of 9)	intron (NM_033446, intron 1 of 9)	321	NM_001011703	89853		NM_033446	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
27795	chr10	35563301	35563750	+	0	NA	intron (NM_001282852, intron 7 of 8)	intron (NM_001282852, intron 7 of 8)	-41816	NM_153368	219770		NM_153368	ENSG00000177291	GJD4	CX40.1	gap junction protein delta 4	protein-coding
219804	chr8	81279801	81282350	+	0	NA	intron (NM_001444, intron 1 of 3)	CpG	539	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
134122	chr2	134130101	134130300	+	0	NA	intron (NM_001371457, intron 1 of 16)	LTR12C|LTR|ERV1	3075	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
172040	chr4	1003251	1003980	+	0	NA	exon (NM_000203, exon 12 of 14)	exon (NM_000203, exon 12 of 14)	3905	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
99114	chr17	49213451	49214180	+	0	NA	intron (NM_001135186, intron 1 of 7)	intron (NM_001135186, intron 1 of 7)	3108	NM_016428	51225		NM_016428	ENSG00000108798	ABI3	NESH|SSH3BP3	ABI family member 3	protein-coding
77835	chr15	88644571	88644930	+	0	NA	intron (NM_001303237, intron 2 of 3)	intron (NM_001303237, intron 2 of 3)	5734	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
170873	chr3	192892871	192893830	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	24506	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
75302	chr15	65249751	65250050	+	0	NA	Intergenic	Intergenic	35691	NR_145768	109617003		NR_145768	ENSG00000206903	SNORA24B	-	small nucleolar RNA, H/ACA box 24B	snoRNA
20922	chr1	202192421	202193150	+	0	NA	Intergenic	Intergenic	-1205	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
164674	chr3	67109701	67109900	+	0	NA	Intergenic	Intergenic	111493	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
87624	chr16	74392251	74392430	+	0	NA	TTS (NM_001306094)	TTS (NM_001306094)	14388	NM_001306094	440348		NM_001018059	ENSG00000196436	NPIPB15	A-761H5.4|NPIPL2	nuclear pore complex interacting protein family member B15	protein-coding
20893	chr1	202152371	202152730	+	0	NA	exon (NM_001199797, exon 8 of 10)	exon (NM_001199797, exon 8 of 10)	6904	NM_001364878	5778		NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase non-receptor type 7	protein-coding
208838	chr7	73694371	73694530	+	0	NA	intron (NR_045512, intron 9 of 10)	L2a|LINE|L2	10853	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
94026	chr17	27217851	27218380	+	0	NA	Intergenic	Intergenic	75881	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
49449	chr12	24947871	24948030	+	0	NA	intron (NM_001178091, intron 1 of 9)	intron (NM_001178091, intron 1 of 9)	1151	NM_005504	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
17679	chr1	157726451	157727030	+	0	NA	Intergenic	AluYh3a3|SINE|Alu	-25971	NM_052939	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
195082	chr6	35570771	35571130	+	0	NA	Intergenic	LTR33C|LTR|ERVL	-58054	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
218976	chr8	61709771	61710130	+	0	NA	intron (NM_032466, intron 1 of 13)	intron (NM_032466, intron 1 of 13)	4642	NM_004318	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
71979	chr15	25761351	25761450	+	0	NA	intron (NM_024490, intron 2 of 20)	THE1C-int|LTR|ERVL-MaLR	87425	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
31106	chr10	89307321	89307580	+	0	NA	3' UTR (NM_001547, exon 2 of 2)	3' UTR (NM_001547, exon 2 of 2)	5404	NM_001547	3433		NM_001547	ENSG00000119922	IFIT2	G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54|ISG-54 K|ISG-54K|ISG54|P54|cig42	interferon induced protein with tetratricopeptide repeats 2	protein-coding
75971	chr15	70495871	70496630	+	0	NA	Intergenic	Intergenic	9678	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
167026	chr3	126389121	126389630	+	0	NA	Intergenic	CpG	5423	NR_103788	100506907		NR_103787	ENSG00000249833	CFAP100-DT	CCDC37-AS1|CCDC37-DT	CFAP100 divergent transcript	ncRNA
70733	chr14	103355821	103357380	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	18751	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
110396	chr19	1944351	1944800	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	3403	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
150316	chr21	42008271	42008450	+	0	NA	promoter-TSS (NR_119384)	promoter-TSS (NR_119384)	-834	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
76190	chr15	73448071	73448430	+	0	NA	intron (NM_001042367, intron 1 of 5)	L1PA7|LINE|L1	5086	NM_001348772	283677		NM_001042367	ENSG00000183324	REC114	C15orf60|CT147|OOMD10|OZEMA10	REC114 meiotic recombination protein	protein-coding
32502	chr10	102743521	102744930	+	0	NA	TTS (NM_178858)	TTS (NM_178858)	277	NM_001083913	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
205160	chr7	7237351	7237450	+	0	NA	intron (NM_020156, intron 2 of 3)	Charlie10b|DNA|hAT-Charlie	-17754	NR_108073	101927354		NR_108073	ENSG00000230825	LINC03016	-	long intergenic non-protein coding RNA 3016	ncRNA
166350	chr3	112978171	112978330	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-3147	NM_170780	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
157867	chr22	49511471	49512030	+	0	NA	intron (NR_110523, intron 1 of 4)	MLT1A0|LTR|ERVL-MaLR	31716	NR_037440	100500882		NR_037440	ENSG00000264139	MIR3667	-	microRNA 3667	ncRNA
203991	chr7	1748121	1748730	+	0	NA	TTS (NM_001128636)	TTS (NM_001128636)	-6115	NR_120510	101927125		NR_120508	ENSG00000236081	ELFN1-AS1	MYCLo-2	ELFN1 antisense RNA 1	ncRNA
84354	chr16	30211301	30212150	+	0	NA	Intergenic	L1MC4|LINE|L1	-4798	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
105666	chr18	2604201	2604650	+	0	NA	intron (NM_006101, intron 13 of 16)	AluJb|SINE|Alu	32868	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
214108	chr7	143892551	143893000	+	0	NA	intron (NM_001206938, intron 1 of 8).2	MLT1A|LTR|ERVL-MaLR	-7405	NM_001206941	9747		NM_014719	ENSG00000198420	TCAF1	FAM115A|GATD9A	TRPM8 channel associated factor 1	protein-coding
76165	chr15	72807021	72807280	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-23392	NM_001365225	83440		NM_031284	ENSG00000159322	ADPGK	2610017G09Rik|ADP-GK	ADP dependent glucokinase	protein-coding
156923	chr22	42295871	42296030	+	0	NA	Intergenic	Intergenic	-12023	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
229965	chr9	126718701	126718900	+	0	NA	Intergenic	L1ME3F|LINE|L1	-86206	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
239315	chrY	17484151	17484780	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	-16493	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
50458	chr12	47742221	47742880	+	0	NA	intron (NM_001098532, intron 17 of 26)	intron (NM_001098532, intron 17 of 26)	15848	NM_001098532	10411		NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
13904	chr1	119799801	119800300	+	0	NA	intron (NM_032044, intron 3 of 5)	intron (NM_032044, intron 3 of 5)	11410	NM_032044	83998		NM_032044	ENSG00000134193	REG4	GISP|REG-IV|RELP	regenerating family member 4	protein-coding
116187	chr19	17454551	17455130	+	0	NA	TTS (NM_138454)	TTS (NM_138454)	6086	NM_138454	115861		NM_138454	ENSG00000171773	NXNL1	RDCVF|TXNL6	nucleoredoxin like 1	protein-coding
182361	chr5	60104351	60104450	+	0	NA	intron (NM_001349241, intron 2 of 17)	L1PA3|LINE|L1	-210674	NM_001104631	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
5552	chr1	25878601	25878800	+	0	NA	Intergenic	AluSg|SINE|Alu	-2992	NM_178422	164091		NM_178422	ENSG00000182749	PAQR7	MPRA|PGLP|mSR	progestin and adipoQ receptor family member 7	protein-coding
158060	chr22	49952721	49953380	+	0	NA	Intergenic	Intergenic	-7722	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
87977	chr16	80576651	80576750	+	0	NA	Intergenic	Intergenic	-3892	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
110368	chr19	1906751	1907330	+	0	NA	intron (NM_001329539, intron 1 of 5)	AluSx3|SINE|Alu	1641	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
107388	chr18	46073401	46074230	+	0	NA	Intergenic	(AATTTT)n|Simple_repeat|Simple_repeat	-1555	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
189920	chr5	177370521	177371230	+	0	NA	intron (NM_006480, intron 10 of 14)	intron (NM_006480, intron 10 of 14)	12951	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
22450	chr1	220879621	220880380	+	0	NA	non-coding (NR_046901, exon 1 of 3)	non-coding (NR_046901, exon 1 of 3)	140	NR_046901	100873924		NR_046901	ENSG00000257551	HLX-AS1	-	HLX antisense RNA 1	ncRNA
79370	chr16	639601	640180	+	0	NA	TTS (NR_149003)	TTS (NR_149003)	-1938	NR_138608	84331		NM_032371	ENSG00000172366	MCRIP2	C16orf14|FAM195A|c349E10.1	MAPK regulated corepressor interacting protein 2	protein-coding
147113	chr20	53918771	53919430	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-43391	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
102400	chr17	75592121	75592450	+	0	NA	exon (NM_001309242, exon 7 of 63)	exon (NM_001309242, exon 7 of 63)	4227	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
126906	chr2	32461001	32461250	+	0	NA	intron (NM_001378125, intron 23 of 73)	(CTCTC)n|Simple_repeat|Simple_repeat	-71028	NR_030285	693143		NR_030285	ENSG00000207653	MIR558	MIRN558|hsa-mir-558	microRNA 558	ncRNA
152204	chr22	20121071	20121230	+	0	NA	intron (NM_002882, intron 2 of 5)	AluSc8|SINE|Alu	3405	NM_001278641	5902		NM_002882	ENSG00000099901	RANBP1	HTF9A	RAN binding protein 1	protein-coding
188230	chr5	150845371	150845530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1071	NM_001346557	345611		NM_001145805	ENSG00000237693	IRGM	IBD19|IFI1|IRGM1|LRG-47|LRG47	immunity related GTPase M	protein-coding
60822	chr13	45367171	45368550	+	0	NA	intron (NR_024458, intron 3 of 10)	AluSc8|SINE|Alu	26515	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
227740	chr9	93072621	93073080	+	0	NA	intron (NM_001287005, intron 2 of 5)	L2|LINE|L2	14149	NM_001287007	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
105698	chr18	2680351	2680950	+	0	NA	intron (NM_015295, intron 5 of 47)	L1MB7|LINE|L1	24924	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
60993	chr13	46796171	46797680	+	0	NA	intron (NM_001984, intron 1 of 9)	CpG	236	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
26056	chr10	12591321	12591580	+	0	NA	intron (NM_153498, intron 2 of 10)	MER89|LTR|ERV1	12697	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
234094	chrX	9341561	9342200	+	0	NA	Intergenic	Intergenic	-121415	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
165232	chr3	73004721	73005180	+	0	NA	intron (NM_001318025, intron 2 of 7)	(GT)n|Simple_repeat|Simple_repeat	8139	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
148061	chr20	63260871	63261230	+	0	NA	non-coding (NR_024389, exon 1 of 1)	non-coding (NR_024389, exon 1 of 1)	-6587	NM_152864	128414		NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	sodium/potassium transporting ATPase interacting 4	protein-coding
29078	chr10	67901201	67902180	+	0	NA	intron (NM_001142498, intron 3 of 7)	intron (NM_001142498, intron 3 of 7)	10288	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
226150	chr9	63706301	63706750	+	0	NA	Intergenic	GSATII|Satellite|centr	-106416	NR_146625	203274		NR_146625		LINC00537	-	long intergenic non-protein coding RNA 537	ncRNA
133645	chr2	127045551	127045650	+	0	NA	Intergenic	Intergenic	36465	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
126656	chr2	29000251	29001180	+	0	NA	intron (NM_199280, intron 4 of 19)	intron (NM_199280, intron 4 of 19)	19417	NM_001321538	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
235800	chrX	49184351	49185230	+	0	NA	intron (NM_006150, intron 1 of 8)	intron (NM_006150, intron 1 of 8)	103	NM_001307979	4007		NM_006150	ENSG00000012211	PRICKLE3	LMO6|LOAM|LOAS|Pk3	prickle planar cell polarity protein 3	protein-coding
178892	chr4	157220351	157220450	+	0	NA	promoter-TSS (NM_001083619)	promoter-TSS (NM_001083619)	68	NM_001379001	2891		NM_000826	ENSG00000120251	GRIA2	GLUR2|GLURB|GluA2|GluR-K2|HBGR2|NEDLIB|gluR-2|gluR-B	glutamate ionotropic receptor AMPA type subunit 2	protein-coding
78951	chr15	101289971	101290880	+	0	NA	intron (NR_135506, intron 1 of 5)	intron (NR_135506, intron 1 of 5)	4823	NR_135506	6627		NM_003090	ENSG00000131876	SNRPA1	Lea1|U2A'	small nuclear ribonucleoprotein polypeptide A'	protein-coding
3002	chr1	12053451	12053550	+	0	NA	Intergenic	Intergenic	-9803	NM_001243	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
191826	chr6	14754601	14755300	+	0	NA	Intergenic	Intergenic	-469496	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
42286	chr11	68332471	68332730	+	0	NA	intron (NM_002335, intron 1 of 22)	intron (NM_002335, intron 1 of 22)	20009	NM_002335	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
96544	chr17	40361451	40361750	+	0	NA	3' UTR (NM_152219, exon 1 of 1)	3' UTR (NM_152219, exon 1 of 1)	3137	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
134297	chr2	135952271	135952630	+	0	NA	intron (NM_001293312, intron 3 of 14)	L1MA6|LINE|L1	-32726	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
204299	chr7	2676001	2676200	+	0	NA	Intergenic	AluSq|SINE|Alu	-3422	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
115335	chr19	15147571	15147730	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-21864	NM_006844	10994		NM_006844	ENSG00000105135	ILVBL	209L8|AHAS|HACL1L|HACL2|ILV2H	ilvB acetolactate synthase like	protein-coding
125055	chr2	9617571	9617830	+	0	NA	intron (NM_006826, intron 2 of 5)	AluJo|SINE|Alu	13297	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
157438	chr22	45235221	45235780	+	0	NA	intron (NM_001009880, intron 1 of 9)	intron (NM_001009880, intron 1 of 9)	5394	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
38616	chr11	46335401	46335800	+	0	NA	intron (NM_201532, intron 1 of 30)	intron (NM_201532, intron 1 of 30)	2674	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
196054	chr6	42106521	42106950	+	0	NA	exon (NM_001164446, exon 4 of 5)	exon (NM_001164446, exon 4 of 5)	35885	NM_001164446	647024		NM_001164446	ENSG00000188112	C6orf132	LncCCLM|bA7K24.2	chromosome 6 open reading frame 132	protein-coding
28707	chr10	61662901	61663230	+	0	NA	5' UTR (NM_001366908, exon 1 of 8)	5' UTR (NM_001366908, exon 1 of 8)	104	NM_173554	219621		NM_173554	ENSG00000183346	CABCOCO1	ARIEL|C10orf107	ciliary associated calcium binding coiled-coil 1	protein-coding
124453	chr19	58515401	58515600	+	0	NA	intron (NM_001316980, intron 2 of 2)	L2|LINE|L2	-3435	NM_001321196	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
47270	chr12	1583421	1583930	+	0	NA	intron (NM_152441, intron 1 of 1)	intron (NM_152441, intron 1 of 1)	10906	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
187810	chr5	146542251	146543030	+	0	NA	Intergenic	Intergenic	-26450	NM_194251	134391		NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|GPCR-2037|PGR7	G protein-coupled receptor 151	protein-coding
84633	chr16	30710351	30710850	+	0	NA	promoter-TSS (NR_002966)	promoter-TSS (NR_002966)	63	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
174077	chr4	27001651	27001900	+	0	NA	intron (NM_020860, intron 5 of 11)	intron (NM_020860, intron 5 of 11)	140934	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
188384	chr5	152207571	152207730	+	0	NA	intron (NR_109876, intron 1 of 2)	L1PA2|LINE|L1	197629	NM_020167	56923		NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
132593	chr2	107872221	107872980	+	0	NA	exon (NM_182588, exon 20 of 23)	exon (NM_182588, exon 20 of 23)	45708	NM_182588	285190		NM_182588	ENSG00000196862	RGPD4	RGP4	RANBP2 like and GRIP domain containing 4	protein-coding
209006	chr7	74274501	74274830	+	0	NA	Intergenic	Intergenic	-14742	NM_032421	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
96052	chr17	39467071	39467530	+	0	NA	intron (NM_016507, intron 1 of 13)	intron (NM_016507, intron 1 of 13)	5814	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
2742	chr1	10671401	10672280	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	124806	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
74297	chr15	58065171	58065680	+	0	NA	non-coding (NR_147215, exon 1 of 3)	non-coding (NR_147215, exon 1 of 3)	200	NR_147215	283665		NR_147215		ALDH1A2-AS1	-	ALDH1A2 antisense RNA 1	ncRNA
42073	chr11	67492121	67492380	+	0	NA	exon (NM_004910, exon 24 of 24)	exon (NM_004910, exon 24 of 24)	2005	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
64093	chr14	22643901	22644300	+	0	NA	Intergenic	Intergenic	-9256	NM_001348233	79549		NM_001348233	ENSG00000255804	OR6J1	OR6J1P|OR6J2	olfactory receptor family 6 subfamily J member 1	protein-coding
53201	chr12	62262521	62263230	+	0	NA	intron (NM_001351164, intron 1 of 21)	intron (NM_001351164, intron 1 of 21)	2471	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
181314	chr5	40338171	40338830	+	0	NA	Intergenic	L1PA6|LINE|L1	286209	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
138469	chr2	206559371	206559530	+	0	NA	intron (NM_003812, intron 10 of 25)	intron (NM_003812, intron 10 of 25)	-83037	NM_001102659	200726		NM_001102659	ENSG00000235118	FAM237A	-	family with sequence similarity 237 member A	protein-coding
16720	chr1	155246071	155246430	+	0	NA	TTS (NM_001267608)	TTS (NM_001267608)	-1623	NM_001005742	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
208467	chr7	66990021	66990300	+	0	NA	intron (NM_016038, intron 4 of 4)	AluSp|SINE|Alu	5426	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
30253	chr10	75114151	75114580	+	0	NA	intron (NM_144660, intron 1 of 4)	intron (NM_144660, intron 1 of 4)	2709	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
144815	chr20	36769851	36770150	+	0	NA	intron (NM_001145317, intron 2 of 9)	G-rich|Low_complexity|Low_complexity	3751	NM_001145316	79980		NM_024918	ENSG00000149636	DSN1	C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3	DSN1 component of MIS12 kinetochore complex	protein-coding
3492	chr1	16023371	16023980	+	0	NA	intron (NM_004070, intron 2 of 19)	intron (NM_004070, intron 2 of 19)	1639	NM_001257139	1187		NM_004070	ENSG00000186510	CLCNKA	CLCK1|ClC-K1|hClC-Ka	chloride voltage-gated channel Ka	protein-coding
142084	chr20	2467871	2468030	+	0	NA	intron (NM_003091, intron 1 of 6)	intron (NM_003091, intron 1 of 6)	2839	NM_003091	6628		NM_003091	ENSG00000125835	SNRPB	CCMS|COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B	small nuclear ribonucleoprotein polypeptides B and B1	protein-coding
235351	chrX	44303251	44303350	+	0	NA	intron (NM_025184, intron 2 of 14)	MER90a|LTR|ERV1	40372	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
71602	chr14	106618501	106619130	+	0	NA	Intergenic	Intergenic	136376	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
98507	chr17	47491121	47491380	+	0	NA	intron (NR_033934, intron 1 of 5)	intron (NR_033934, intron 1 of 5)	1370	NR_033934	653479		NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
165098	chr3	71504271	71504450	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	37729	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
17371	chr1	156557521	156557930	+	0	NA	intron (NM_178229, intron 11 of 37)	SVA_F|Retroposon|SVA	14840	NM_178229	128239		NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
11810	chr1	92831651	92832830	+	0	NA	TTS (NM_001252273)	TTS (NM_001252273)	200	NM_000969	6125		NM_000969	ENSG00000122406	RPL5	L5|MSTP030|PPP1R135|uL18	ribosomal protein L5	protein-coding
23033	chr1	226438071	226438500	+	0	NA	Intergenic	L1ME4b|LINE|L1	-30192	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
150425	chr21	42411301	42412830	+	0	NA	intron (NM_001243467, intron 3 of 11)	intron (NM_001243467, intron 3 of 11)	8163	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
26744	chr10	22697151	22697630	+	0	NA	intron (NM_005028, intron 1 of 9)	MamRTE1|LINE|RTE-BovB	16718	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
16637	chr1	155126371	155127300	+	0	NA	Intergenic	CpG	-1041	NM_182685	1942		NM_004428	ENSG00000169242	EFNA1	B61|ECKLG|EFL1|EPLG1|GMAN|LERK-1|LERK1|TNFAIP4	ephrin A1	protein-coding
17902	chr1	160108921	160109330	+	0	NA	Intergenic	Intergenic	-6634	NM_000702	477		NM_000702	ENSG00000018625	ATP1A2	DEE98|FARIMPD|FHM2|MHP2	ATPase Na+/K+ transporting subunit alpha 2	protein-coding
216578	chr8	21965971	21966130	+	0	NA	intron (NM_001362802, intron 1 of 26)	intron (NM_001362802, intron 1 of 26)	46388	NM_001362802	23039		NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
133971	chr2	130726601	130728600	+	0	NA	Intergenic	CpG	-1470	NM_207364	344561		NM_207364	ENSG00000173302	GPR148	BTR|PGR6	G protein-coupled receptor 148	protein-coding
206911	chr7	38169871	38170230	+	0	NA	Intergenic	Intergenic	-8195	NM_001363347	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
220591	chr8	100902701	100902900	+	0	NA	Intergenic	Intergenic	47771	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
114876	chr19	13877151	13877450	+	0	NA	promoter-TSS (NM_001098622)	promoter-TSS (NM_001098622)	51	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
173625	chr4	12633071	12633260	+	0	NA	Intergenic	Intergenic	409714	NR_125910	101929019		NR_125910	ENSG00000251210	LINC02270	-	long intergenic non-protein coding RNA 2270	ncRNA
56150	chr12	111359371	111359800	+	0	NA	Intergenic	Intergenic	9510	NM_001177996	144717		NM_144671	ENSG00000198324	PHETA1	FAM109A|IPIP27A|SES1	PH domain containing endocytic trafficking adaptor 1	protein-coding
10483	chr1	66357151	66358100	+	0	NA	intron (NM_001037340, intron 7 of 14)	intron (NM_001037340, intron 7 of 14)	3090	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
211740	chr7	107173121	107173380	+	0	NA	intron (NM_012257, intron 1 of 10)	intron (NM_012257, intron 1 of 10)	4247	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
104938	chr17	81934351	81934750	+	0	NA	intron (NM_001282279, intron 5 of 6)	intron (NM_001282279, intron 5 of 6)	2750	NM_153824	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
180312	chr5	5496171	5496480	+	0	NA	Intergenic	Intergenic	73648	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
51444	chr12	52040951	52041050	+	0	NA	intron (NM_001202234, intron 1 of 7)	intron (NM_001202234, intron 1 of 7)	3285	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
5781	chr1	26532001	26532900	+	0	NA	intron (NM_002953, intron 1 of 21)	intron (NM_002953, intron 1 of 21)	2689	NM_002953	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
79529	chr16	815351	815650	+	0	NA	Intergenic	AluSx1|SINE|Alu	10057	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
113923	chr19	10712751	10713680	+	0	NA	exon (NM_031209, exon 10 of 10)	exon (NM_031209, exon 10 of 10)	-4838	NM_004945	1785		NM_004945	ENSG00000079805	DNM2	CMT2M|CMTDI1|CMTDIB|DI-CMTB|DYN2|DYNII|LCCS5	dynamin 2	protein-coding
44139	chr11	96134351	96135330	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-206598	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
155545	chr22	38714071	38714930	+	0	NA	intron (NM_004286, intron 2 of 11)	L2c|LINE|L2	8556	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
42962	chr11	73743501	73743700	+	0	NA	intron (NM_198896, intron 1 of 7)	AluJr|SINE|Alu	16493	NM_001243719	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
123721	chr19	55048921	55049500	+	0	NA	intron (NM_001145971, intron 3 of 6).10	MLT1C|LTR|ERVL-MaLR	-10946	NM_001256017	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
169100	chr3	155079551	155079850	+	0	NA	promoter-TSS (NM_001354644)	promoter-TSS (NM_001354644)	28	NM_000902	4311		NM_000902	ENSG00000196549	MME	CALLA|CD10|CMT2T|NEP|SCA43|SFE	membrane metalloendopeptidase	protein-coding
220417	chr8	100279501	100280080	+	0	NA	intron (NM_183419, intron 2 of 9)	AluSz|SINE|Alu	22403	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
174393	chr4	39118201	39118430	+	0	NA	intron (NM_199039, intron 9 of 9)	MIR|SINE|MIR	56083	NM_015990	51088		NM_015990	ENSG00000109790	KLHL5	-	kelch like family member 5	protein-coding
83275	chr16	24012971	24013130	+	0	NA	intron (NM_212535, intron 3 of 16)	intron (NM_212535, intron 3 of 16)	177067	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
129011	chr2	64862701	64863430	+	0	NA	intron (NR_110224, intron 1 of 4)	L2a|LINE|L2	566	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
177018	chr4	106328971	106329550	+	0	NA	intron (NM_001142415, intron 4 of 6)	LTR82B|LTR|ERVL	-12577	NM_001163436	93627		NM_033115	ENSG00000145348	TBCK	FERRY1|Fy-1|HSPC302|IHPRF3|TBCKL	TBC1 domain containing kinase	protein-coding
69394	chr14	94043551	94044980	+	0	NA	intron (NM_023112, intron 4 of 5)	intron (NM_023112, intron 4 of 5)	17925	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
52646	chr12	56289001	56289980	+	0	NA	intron (NM_004077, intron 1 of 10)	AluY|SINE|Alu	10840	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
82994	chr16	22109451	22109980	+	0	NA	intron (NM_173615, intron 7 of 33).2	intron (NM_173615, intron 7 of 33).2	17174	NM_173615	146177		NM_173615	ENSG00000175267	VWA3A	-	von Willebrand factor A domain containing 3A	protein-coding
196830	chr6	46652501	46653480	+	0	NA	promoter-TSS (NM_001204052)	promoter-TSS (NM_001204052)	15	NM_004277	9481		NM_004277	ENSG00000153291	SLC25A27	UCP4	solute carrier family 25 member 27	protein-coding
202240	chr6	156856401	156856800	+	0	NA	intron (NM_017519, intron 2 of 18)	intron (NM_017519, intron 2 of 18)	-76869	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
4075	chr1	19072071	19072230	+	0	NA	Intergenic	Intergenic	-115474	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
134279	chr2	135795771	135795930	+	0	NA	intron (NM_002299, intron 13 of 16)	AluJr|SINE|Alu	-24341	NR_045486	100507600		NR_045486	ENSG00000226806	LCT-AS1	-	LCT antisense RNA 1	ncRNA
58782	chr12	132731721	132732330	+	0	NA	intron (NM_015114, intron 10 of 12)	CpG	21183	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
204277	chr7	2646851	2648100	+	0	NA	exon (NM_025250, exon 4 of 14)	exon (NM_025250, exon 4 of 14)	15489	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
78112	chr15	90300851	90301600	+	0	NA	Intergenic	Intergenic	-35466	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
37390	chr11	17074901	17075100	+	0	NA	promoter-TSS (NR_000022)	promoter-TSS (NR_000022)	-256	NR_000022	26822		NR_000022	ENSG00000272034	SNORD14A	RNU14|RNU14A|U14|U14-S13-5	small nucleolar RNA, C/D box 14A	snoRNA
174099	chr4	36064471	36064830	+	0	NA	intron (NR_146893, intron 32 of 36)	intron (NR_146893, intron 32 of 36)	179289	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
229300	chr9	120857421	120857680	+	0	NA	non-coding (NR_104601, exon 9 of 9)	non-coding (NR_104601, exon 9 of 9)	10868	NR_152407	253039		NR_024408	ENSG00000293514	CUTALP	PSMD5-AS1	cutA divalent cation tolerance like, pseudogene	pseudo
8922	chr1	43993551	43994050	+	0	NA	intron (NM_001349128, intron 3 of 7)	intron (NM_001349128, intron 3 of 7)	1953	NM_001349128	149473		NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding
66174	chr14	60649071	60650030	+	0	NA	promoter-TSS (NM_005982)	promoter-TSS (NM_005982)	-73	NM_005982	6495		NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
35045	chr11	585201	586050	+	0	NA	intron (NM_001286582, intron 3 of 17)	intron (NM_001286582, intron 3 of 17)	9155	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
193462	chr6	30512401	30513350	+	0	NA	Intergenic	AluJo|SINE|Alu	-3391	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
54257	chr12	85468721	85468980	+	0	NA	Intergenic	MamRep564|Unknown|Unknown	188630	NM_006982	8092		NM_006982	ENSG00000180318	ALX1	CART1|FND3|HEL23	ALX homeobox 1	protein-coding
147532	chr20	59398501	59398700	+	0	NA	Intergenic	Intergenic	97989	NM_001302456	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
182848	chr5	69368951	69370330	+	0	NA	promoter-TSS (NM_003187)	promoter-TSS (NM_003187)	-120	NM_016283	102157402		NM_016283	ENSG00000085231	AK6	AD-004|CGI-137|CINAP|CIP|hCINAP	adenylate kinase 6	protein-coding
166665	chr3	120077201	120077600	+	0	NA	intron (NM_001146156, intron 1 of 10)	L1MA9|LINE|L1	7248	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
37365	chr11	16604501	16605250	+	0	NA	intron (NM_001367872, intron 3 of 16)	CpG	-128487	NM_033326	55553		NM_017508	ENSG00000110693	SOX6	HSSOX6|SOXD|TOLCAS	SRY-box transcription factor 6	protein-coding
18294	chr1	161144671	161144830	+	0	NA	Intergenic	AluSc8|SINE|Alu	-9228	NM_016406	51506		NM_016406	ENSG00000143222	UFC1	HSPC155|NEDSG	ubiquitin-fold modifier conjugating enzyme 1	protein-coding
65597	chr14	52154921	52155680	+	0	NA	Intergenic	HAL1|LINE|L1	-86241	NM_007361	22795		NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
225815	chr9	37751951	37752050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1803	NM_001286952	158234		NM_144964	ENSG00000165275	TRMT10B	RG9MTD3|bA3J10.9	tRNA methyltransferase 10B	protein-coding
202573	chr6	158683251	158683730	+	0	NA	intron (NM_001318745, intron 3 of 14)	AluSc|SINE|Alu	20087	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
72849	chr15	40217121	40217630	+	0	NA	promoter-TSS (NM_001128629)	promoter-TSS (NM_001128629)	-53	NM_001128629	106821730		NM_001128628	ENSG00000137843	BUB1B-PAK6	PAK-5|PAK-6|PAK5|PAK6	BUB1B-PAK6 readthrough	protein-coding
132020	chr2	100679501	100679700	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	75861	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
174142	chr4	36234271	36234500	+	0	NA	intron (NR_146894, intron 1 of 32)	MLT1A0|LTR|ERVL-MaLR	9554	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
50545	chr12	47962401	47962650	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1022	NM_024056	79022		NM_024056	ENSG00000134291	TMEM106C	-	transmembrane protein 106C	protein-coding
213322	chr7	135182401	135182800	+	0	NA	Intergenic	Intergenic	-11774	NM_001243754	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
1040	chr1	1881651	1881750	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	9387	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
110841	chr19	2542501	2542950	+	0	NA	intron (NM_052847, intron 3 of 4)	intron (NM_052847, intron 3 of 4)	66598	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
179206	chr4	173416701	173417330	+	0	NA	intron (NM_001329597, intron 2 of 3)	(CA)n|Simple_repeat|Simple_repeat	-17899	NM_007281	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
86939	chr16	68105771	68105930	+	0	NA	intron (NM_173165, intron 1 of 9)	L1M4|LINE|L1	20480	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
22617	chr1	223482821	223483080	+	0	NA	Intergenic	MIR|SINE|MIR	89535	NM_152610	164127		NM_152610	ENSG00000178395	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
32706	chr10	104080701	104080950	+	0	NA	intron (NM_000494, intron 1 of 55)	intron (NM_000494, intron 1 of 55)	5055	NM_000494	1308		NM_000494	ENSG00000065618	COL17A1	BA16H23.2|BP180|BPA-2|BPAG2|ERED|JEB4|LAD-1	collagen type XVII alpha 1 chain	protein-coding
14550	chr1	144882471	144882700	+	0	NA	intron (NR_104189, intron 2 of 3).2	CpG	164414	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
153187	chr22	23844471	23844630	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-5544	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
165066	chr3	71457551	71457650	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	84489	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
239426	chrY	56685471	56685630	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-268705	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
58991	chr13	19990701	19991100	+	0	NA	intron (NM_001353162, intron 4 of 26)	intron (NM_001353162, intron 4 of 26)	31876	NM_001353161	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
193575	chr6	30675051	30675350	+	0	NA	Intergenic	Intergenic	-2147	NM_001164239	8449		NM_003587	ENSG00000204560	DHX16	DBP2|DDX16|NMOAS|PRO2014|PRP8|PRPF2|Prp2	DEAH-box helicase 16	protein-coding
152429	chr22	20582371	20584000	+	0	NA	exon (NM_001293237, exon 11 of 17)	exon (NM_001293237, exon 11 of 17)	75138	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
166801	chr3	122573771	122573930	+	0	NA	3' UTR (NM_138287, exon 5 of 5)	3' UTR (NM_138287, exon 5 of 5)	-3800	NM_001113523	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
83622	chr16	28213951	28214250	+	0	NA	Intergenic	AluSp|SINE|Alu	-2135	NM_015171	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
185745	chr5	132109451	132109750	+	0	NA	Intergenic	Intergenic	35811	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
28219	chr10	45104871	45105030	+	0	NA	intron (NR_024472, intron 8 of 8)	AluJb|SINE|Alu	49646	NR_024472	100133308		NR_024472		RSU1P2	-	Ras suppressor protein 1 pseudogene 2	pseudo
70105	chr14	100233801	100234000	+	0	NA	Intergenic	AluSz|SINE|Alu	-5244	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
97560	chr17	44083501	44083780	+	0	NA	exon (NM_001015053, exon 18 of 27)	exon (NM_001015053, exon 18 of 27)	12729	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
89053	chr16	88441201	88441600	+	0	NA	TTS (NM_001367624)	TTS (NM_001367624)	-11880	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
222718	chr8	141320401	141321050	+	0	NA	Intergenic	Intergenic	-12437	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
104074	chr17	80225421	80225680	+	0	NA	intron (NM_001166348, intron 4 of 16)	intron (NM_001166348, intron 4 of 16)	5123	NM_001166348	284129		NM_173626	ENSG00000181045	SLC26A11	-	solute carrier family 26 member 11	protein-coding
125583	chr2	16653901	16654100	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	11834	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
86288	chr16	58618551	58618850	+	0	NA	intron (NM_206999, intron 1 of 30)	U13|snRNA|snRNA	11126	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
199131	chr6	111708371	111708950	+	0	NA	intron (NM_001370529, intron 3 of 11)	intron (NM_001370529, intron 3 of 11)	50471	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
235678	chrX	48601971	48602330	+	0	NA	exon (NM_001347219, exon 8 of 10)	exon (NM_001347219, exon 8 of 10)	4658	NM_017883	64743		NM_017883	ENSG00000101940	WDR13	MG21	WD repeat domain 13	protein-coding
133308	chr2	113700151	113700800	+	0	NA	Intergenic	Intergenic	20893	NR_039943	100616208		NR_039943	ENSG00000265429	MIR4782	-	microRNA 4782	ncRNA
128508	chr2	60467701	60467950	+	0	NA	intron (NM_001365609, intron 2 of 2)	intron (NM_001365609, intron 2 of 2)	-76450	NR_132992	106660609		NR_132991	ENSG00000228590	MIR4432HG	-	MIR4432 host gene	ncRNA
155827	chr22	39388001	39390180	+	0	NA	Intergenic	CpG	-10690	NM_006116	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
107626	chr18	48939271	48939900	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	3222	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
70498	chr14	102136621	102137080	+	0	NA	intron (NM_001017963, intron 1 of 11)	AluSq10|SINE|Alu	-2573	NM_001353670	91833		NM_144574	ENSG00000140153	WDR20	Bun107|DMR	WD repeat domain 20	protein-coding
97595	chr17	44112801	44113280	+	0	NA	intron (NM_001015053, intron 2 of 26)	intron (NM_001015053, intron 2 of 26)	-2872	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
207120	chr7	42611851	42612150	+	0	NA	Intergenic	Intergenic	94447	NR_110833	101928795		NR_110833	ENSG00000238284	LINC01448	-	long intergenic non-protein coding RNA 1448	ncRNA
92956	chr17	17046071	17046230	+	0	NA	intron (NM_015134, intron 1 of 22)	L1ME3G|LINE|L1	3693	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
41708	chr11	66647471	66647630	+	0	NA	intron (NM_001198844, intron 2 of 2)	intron (NM_001198844, intron 2 of 2)	8847	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
166307	chr3	112664551	112664730	+	0	NA	Intergenic	L1PA3|LINE|L1	-23497	NM_199511	151887		NM_178274	ENSG00000091986	CCDC80	CL2|DRO1|LINC01279|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
227518	chr9	91395621	91396000	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	28022	NM_005384	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
126869	chr2	32012451	32012900	+	0	NA	intron (NM_001321210, intron 5 of 5)	AluSx1|SINE|Alu	-1667	NM_001371918	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
40006	chr11	62648171	62649030	+	0	NA	exon (NM_030628, exon 2 of 2)	exon (NM_030628, exon 2 of 2)	-1874	NM_001278194	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
208448	chr7	66923101	66923500	+	0	NA	intron (NM_017994, intron 1 of 6)	AluSx1|SINE|Alu	2075	NM_017994	55069		NM_017994	ENSG00000106609	TMEM248	C7orf42	transmembrane protein 248	protein-coding
201645	chr6	149474721	149474980	+	0	NA	intron (NM_207360, intron 1 of 5)	intron (NM_207360, intron 1 of 5)	10164	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
9650	chr1	52614801	52615000	+	0	NA	Intergenic	Intergenic	12529	NM_015696	2882		NM_015696	ENSG00000116157	GPX7	CL683|GPX6|GPx-7|GSHPx-7|NPGPx	glutathione peroxidase 7	protein-coding
162022	chr3	46537901	46538100	+	0	NA	intron (NM_024512, intron 4 of 8)	LTR40c|LTR|ERVL	-19398	NR_073385	83598		NM_031441	ENSG00000268324	LRRC2-AS1	LUZP3|LUZP3P|LUZPP1	LRRC2 antisense RNA 1	ncRNA
118177	chr19	35043051	35043350	+	0	NA	intron (NM_182983, intron 2 of 12)	intron (NM_182983, intron 2 of 12)	1479	NM_001384133	3249		NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
139474	chr2	224025501	224026250	+	0	NA	intron (NM_006216, intron 1 of 8)	Kanga2_a|DNA|TcMar-Tc2	5603	NR_073116	5270		NM_006216	ENSG00000135919	SERPINE2	GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI	serpin family E member 2	protein-coding
69024	chr14	91649921	91650200	+	0	NA	intron (NM_024764, intron 15 of 26).2	Kanga1|DNA|TcMar-Tc2	82026	NM_024764	79820		NM_024764	ENSG00000133962	CATSPERB	C14orf161|CatSper(beta)	cation channel sperm associated auxiliary subunit beta	protein-coding
1863	chr1	6404501	6405250	+	0	NA	Intergenic	Intergenic	-11108	NM_007274	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
73381	chr15	42555001	42556180	+	0	NA	intron (NM_001130447, intron 1 of 4)	intron (NM_001130447, intron 1 of 4)	6752	NM_001130447	55142		NM_018097	ENSG00000137814	HAUS2	C15orf25|CEP27|HsT17025	HAUS augmin like complex subunit 2	protein-coding
145320	chr20	41077521	41077830	+	0	NA	intron (NM_003286, intron 5 of 20)	intron (NM_003286, intron 5 of 20)	48853	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
176709	chr4	101169151	101169550	+	0	NA	intron (NM_001130692, intron 2 of 11)	intron (NM_001130692, intron 2 of 11)	71522	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
155321	chr22	38211651	38212200	+	0	NA	intron (NM_001161573, intron 1 of 2)	intron (NM_001161573, intron 1 of 2)	8905	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
149758	chr21	34670501	34671000	+	0	NA	exon (NM_053277, exon 1 of 6)	exon (NM_053277, exon 1 of 6)	1756	NM_001317009	54102		NM_053277	ENSG00000159212	CLIC6	CLIC1L	chloride intracellular channel 6	protein-coding
124188	chr19	56163951	56164250	+	0	NA	Intergenic	Intergenic	-11908	NM_033106	85569		NM_033106	ENSG00000197487	GALP	GAL	galanin like peptide	protein-coding
207674	chr7	45109601	45109800	+	0	NA	intron (NM_199122, intron 1 of 8)	AluSz|SINE|Alu	1997	NM_004749	9238		NM_004749	ENSG00000136270	TBRG4	CPR2|FASTKD4	transforming growth factor beta regulator 4	protein-coding
89786	chr16	89482351	89483100	+	0	NA	intron (NM_001256182, intron 1 of 13)	FRAM|SINE|Alu	7836	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
109862	chr19	1232071	1232900	+	0	NA	intron (NM_152769, intron 8 of 8)	intron (NM_152769, intron 8 of 8)	5520	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
230455	chr9	128190671	128192230	+	0	NA	5' UTR (NM_001131018, exon 1 of 17)	5' UTR (NM_001131018, exon 1 of 17)	122	NM_001257976	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
181251	chr5	39208501	39208950	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	10838	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
191595	chr6	12047601	12048200	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	35588	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
204026	chr7	1924271	1924630	+	0	NA	intron (NM_001304524, intron 15 of 16)	L1MDa|LINE|L1	16121	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
75124	chr15	64552521	64552780	+	0	NA	intron (NM_015042, intron 2 of 9)	AluSz6|SINE|Alu	92072	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
186374	chr5	134924421	134924700	+	0	NA	intron (NM_032151, intron 2 of 3)	intron (NM_032151, intron 2 of 3)	19429	NM_032151	84105		NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
29735	chr10	72105751	72106050	+	0	NA	intron (NM_001369102, intron 10 of 11)	intron (NM_001369102, intron 10 of 11)	-16868	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
44906	chr11	115214571	115215180	+	0	NA	intron (NM_001301043, intron 6 of 11)	intron (NM_001301043, intron 6 of 11)	-118702	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
142732	chr20	10218351	10218900	+	0	NA	promoter-TSS (NM_001322902)	promoter-TSS (NM_001322902)	-205	NM_001322910	6616		NM_003081	ENSG00000132639	SNAP25	CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2	synaptosome associated protein 25	protein-coding
1394	chr1	2542671	2542850	+	0	NA	Intergenic	Intergenic	-12497	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
54777	chr12	94173571	94174100	+	0	NA	intron (NM_005761, intron 2 of 30)	intron (NM_005761, intron 2 of 30)	25258	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
22952	chr1	225998051	225998150	+	0	NA	intron (NM_152608, intron 1 of 6)	AluSq2|SINE|Alu	1243	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
184900	chr5	112869601	112870200	+	0	NA	TTS (NM_003135)	TTS (NM_003135)	8613	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
147655	chr20	62228671	62229080	+	0	NA	intron (NR_160555, intron 1 of 3)	intron (NR_160555, intron 1 of 3)	632	NR_160555	105369209		NR_160555	ENSG00000130703	LOC105369209	-	uncharacterized LOC105369209	ncRNA
74464	chr15	59751821	59752280	+	0	NA	Intergenic	Intergenic	-62730	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
114849	chr19	13846071	13848400	+	0	NA	Intergenic	Intergenic	-4317	NR_036515	284454		NR_036515		MIR23AHG	Smyca	miR-23a/27a/24-2 cluster host gene	ncRNA
41342	chr11	65924971	65925130	+	0	NA	Intergenic	MIRb|SINE|MIR	5624	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
122394	chr19	49427671	49429150	+	0	NA	TTS (NM_020309)	TTS (NM_020309)	3022	NM_001195256	100507003		NM_001195256	ENSG00000261949	GFY	Goofy	golgi associated olfactory signaling regulator	protein-coding
138745	chr2	214808801	214810650	+	0	NA	promoter-TSS (NM_001282549)	promoter-TSS (NM_001282549)	-42	NM_001282545	580		NM_000465	ENSG00000138376	BARD1	-	BRCA1 associated RING domain 1	protein-coding
79401	chr16	671071	671430	+	0	NA	intron (NR_147953, intron 9 of 16)	intron (NR_147953, intron 9 of 16)	3118	NM_001352284	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
79895	chr16	1564471	1564630	+	0	NA	intron (NM_014714, intron 16 of 30)	intron (NM_014714, intron 16 of 30)	-15977	NR_135176	105371046		NR_135176	ENSG00000260989	LOC105371046	-	uncharacterized LOC105371046	ncRNA
164218	chr3	56919121	56920280	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	-3264	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
100758	chr17	63962701	63963130	+	0	NA	intron (NM_000334, intron 10 of 23)	intron (NM_000334, intron 10 of 23)	10003	NM_000334	6329		NM_000334	ENSG00000007314	SCN4A	CMS16|CMYP22A|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium voltage-gated channel alpha subunit 4	protein-coding
64116	chr14	22827921	22828600	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-1627	NM_001318870	122704		NM_178336	ENSG00000172590	MRPL52	mL52	mitochondrial ribosomal protein L52	protein-coding
183383	chr5	77632471	77632830	+	0	NA	intron (NM_032109, intron 2 of 2)	intron (NM_032109, intron 2 of 2)	6063	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
147905	chr20	62894921	62895180	+	0	NA	exon (NM_033081, exon 9 of 16)	exon (NM_033081, exon 9 of 16)	-12147	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
184650	chr5	107501201	107501400	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	169637	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
140862	chr2	237441201	237441950	+	0	NA	Intergenic	Intergenic	-27368	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
110347	chr19	1881901	1883460	+	0	NA	intron (NM_001130111, intron 1 of 4)	intron (NM_001130111, intron 1 of 4)	2816	NM_001130111	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
130271	chr2	84870351	84870830	+	0	NA	exon (NM_001277053, exon 2 of 7)	exon (NM_001277053, exon 2 of 7)	10494	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
207773	chr7	50167251	50168400	+	0	NA	Intergenic	Intergenic	71942	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
110223	chr19	1759751	1760850	+	0	NA	intron (NM_001080488, intron 1 of 1)	intron (NM_001080488, intron 1 of 1)	6794	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
170091	chr3	183016221	183016480	+	0	NA	intron (NR_120639, intron 15 of 15)	AluSz|SINE|Alu	-30432	NM_001308101	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
79860	chr16	1492871	1494600	+	0	NA	intron (NM_001351846, intron 1 of 20)	CpG	375	NM_016111	9894		NM_016111	ENSG00000100726	TELO2	CLK2|TEL2|YHFS	telomere maintenance 2	protein-coding
2076	chr1	7936101	7936300	+	0	NA	intron (NM_001561, intron 5 of 7)	AluSq2|SINE|Alu	4639	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
129884	chr2	73114971	73115130	+	0	NA	Intergenic	Intergenic	-2102	NM_015470	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
115470	chr19	15356971	15357780	+	0	NA	intron (NM_005858, intron 13 of 13)	AluYh3|SINE|Alu	22412	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
176631	chr4	99822021	99822280	+	0	NA	intron (NM_014395, intron 1 of 8)	intron (NM_014395, intron 1 of 8)	5323	NM_014395	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
52428	chr12	55824851	55825150	+	0	NA	intron (NM_032364, intron 2 of 6)	AluJo|SINE|Alu	-4608	NR_036479	440104		NM_001013700	ENSG00000293491	TMEM198B	-	transmembrane protein 198B (pseudogene)	pseudo
96583	chr17	40509971	40510130	+	0	NA	Intergenic	Intergenic	-8427	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
93807	chr17	20542271	20542430	+	0	NA	Intergenic	L2a|LINE|L2	-37374	NM_001190790	256223		NM_001190790	ENSG00000214819	CDRT15L2	-	CMT1A duplicated region transcript 15 like 2	protein-coding
82068	chr16	13957001	13957680	+	0	NA	Intergenic	Intergenic	37186	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
15794	chr1	151256471	151257330	+	0	NA	intron (NM_002810, intron 1 of 9)	AluSp|SINE|Alu	2166	NM_001330692	5710		NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	proteasome 26S subunit ubiquitin receptor, non-ATPase 4	protein-coding
83755	chr16	28697751	28698400	+	0	NA	intron (NM_001199142, intron 1 of 20)	SVA_F|Retroposon|SVA	9517	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
157848	chr22	48497651	48498130	+	0	NA	intron (NM_001082967, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	8337	NM_001082967	25817		NM_015381	ENSG00000219438	TAFA5	FAM19A5|QLLK5208|TAFA-5|UNQ5208	TAFA chemokine like family member 5	protein-coding
97829	chr17	44910101	44910300	+	0	NA	exon (NM_001131019, exon 8 of 8)	exon (NM_001131019, exon 8 of 8)	5300	NM_001131019	2670		NM_002055	ENSG00000131095	GFAP	ALXDRD	glial fibrillary acidic protein	protein-coding
20420	chr1	198204571	198204730	+	0	NA	intron (NM_133494, intron 1 of 9)	AluYe5|SINE|Alu	47652	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
231141	chr9	129858601	129858900	+	0	NA	intron (NM_001110303, intron 6 of 25)	intron (NM_001110303, intron 6 of 25)	-10855	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
167299	chr3	128674451	128675400	+	0	NA	Intergenic	Intergenic	-24107	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
62852	chr13	110341851	110341950	+	0	NA	TTS (NR_107040)	TTS (NR_107040)	942	NR_107040	102465872		NR_107040	ENSG00000276765	MIR8073	hsa-mir-8073	microRNA 8073	ncRNA
63332	chr13	114016551	114016950	+	0	NA	intron (NM_001320822, intron 12 of 23).2	intron (NM_001320822, intron 12 of 23).2	-42674	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
243	chr1	906621	907830	+	0	NA	Intergenic	AluSz6|SINE|Alu	12467	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
219128	chr8	66036551	66037230	+	0	NA	intron (NR_146171, intron 1 of 6)	intron (NR_146171, intron 1 of 6)	15337	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
4027	chr1	18940851	18941150	+	0	NA	intron (NM_001136265, intron 1 of 8)	MIRb|SINE|MIR	15676	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
183089	chr5	74328051	74328150	+	0	NA	intron (NR_105010, intron 2 of 2)	intron (NR_105010, intron 2 of 2)	5614	NR_105010	101929082		NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA
55282	chr12	102964901	102965500	+	0	NA	Intergenic	Intergenic	-6759	NM_001354304	5053		NM_000277	ENSG00000171759	PAH	PH|PKU|PKU1	phenylalanine hydroxylase	protein-coding
195633	chr6	37850671	37851130	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	31173	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
3205	chr1	13755771	13756150	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	6545	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
86106	chr16	57654951	57655450	+	0	NA	intron (NM_001370440, intron 6 of 14)	intron (NM_001370440, intron 6 of 14)	-13106	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
11458	chr1	89873901	89874200	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	52111	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
34762	chr11	197521	198200	+	0	NA	intron (NM_053280, intron 3 of 6)	intron (NM_053280, intron 3 of 6)	1099	NM_053280	113746		NM_053280	ENSG00000177947	CIMAP1A	CT135|ODF3|SHIPPO1|TISP50	ciliary microtubule associated protein 1A	protein-coding
224599	chr9	20373301	20373500	+	0	NA	intron (NM_001286691, intron 5 of 10)	intron (NM_001286691, intron 5 of 10)	37838	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
37020	chr11	12088921	12089180	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-21526	NM_001282668	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
56411	chr12	113291451	113291750	+	0	NA	promoter-TSS (NR_106820)	promoter-TSS (NR_106820)	77	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
216986	chr8	23101401	23101600	+	0	NA	intron (NR_046173, intron 3 of 3)	MER21-int|LTR|ERVL	-1421	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
44337	chr11	102415321	102416100	+	0	NA	intron (NM_052932, intron 2 of 4)	L1PA15|LINE|L1	37055	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
235857	chrX	50431051	50431150	+	0	NA	intron (NM_001013742, intron 1 of 27)	AluJr4|SINE|Alu	39725	NM_001013742	139189		NM_001013742	ENSG00000274588	DGKK	-	diacylglycerol kinase kappa	protein-coding
105859	chr18	3060521	3062330	+	0	NA	Intergenic	Intergenic	-48281	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
131991	chr2	100427521	100427900	+	0	NA	Intergenic	Intergenic	-10042	NM_004854	9486		NM_004854	ENSG00000115526	CHST10	HNK-1ST|HNK1ST	carbohydrate sulfotransferase 10	protein-coding
226107	chr9	62860921	62861450	+	0	NA	intron (NR_122076, intron 4 of 5)	intron (NR_122076, intron 4 of 5)	20540	NR_135010	442421		NR_024496		PTGER4P2-CDK2AP2P2	-	PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene	pseudo
145577	chr20	44493771	44494130	+	0	NA	3' UTR (NM_024331, exon 6 of 6)	3' UTR (NM_024331, exon 6 of 6)	18076	NM_001261839	79183		NM_024331	ENSG00000124120	TTPAL	C20orf121	alpha tocopherol transfer protein like	protein-coding
189627	chr5	176033001	176033950	+	0	NA	Intergenic	L1MDb|LINE|L1	28580	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
25719	chr10	9009721	9010580	+	0	NA	Intergenic	Intergenic	112161	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
72413	chr15	31433921	31437080	+	0	NA	exon (NM_001302461, exon 2 of 2).3	exon (NM_001302461, exon 2 of 2).3	108665	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
21711	chr1	206746701	206747100	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	23703	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
187429	chr5	142024851	142025650	+	0	NA	Intergenic	Intergenic	-12223	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
195734	chr6	39231001	39231200	+	0	NA	Intergenic	Intergenic	-1625	NM_003740	8645		NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding
126735	chr2	30195451	30196180	+	0	NA	Intergenic	AluSp|SINE|Alu	8381	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
159456	chr3	14122551	14122950	+	0	NA	intron (NM_144636, intron 1 of 3)	L2b|LINE|L2	2120	NM_144636	131474		NM_144636	ENSG00000163528	CHCHD4	MIA40|TIMM40	coiled-coil-helix-coiled-coil-helix domain containing 4	protein-coding
4112	chr1	19315951	19316680	+	0	NA	intron (NM_001040126, intron 2 of 7)	intron (NM_001040126, intron 2 of 7)	3989	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
102457	chr17	75707951	75709100	+	0	NA	TTS (NM_013260)	TTS (NM_013260)	-12934	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
139102	chr2	218896051	218897690	+	0	NA	Intergenic	Intergenic	16018	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
232459	chr9	136170251	136170730	+	0	NA	Intergenic	Intergenic	31184	NM_001363746	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
175219	chr4	56836351	56836990	+	0	NA	Intergenic	Intergenic	-14801	NM_021114	6691		NM_021114	ENSG00000128040	SPINK2	HUSI-II|SPGF29	serine peptidase inhibitor Kazal type 2	protein-coding
214824	chr7	151242401	151242600	+	0	NA	exon (NM_001003801, exon 5 of 13)	exon (NM_001003801, exon 5 of 13)	4079	NR_030407	768213		NR_030407	ENSG00000284191	MIR671	MIRN671|hsa-mir-671|mir-671	microRNA 671	ncRNA
134246	chr2	135050571	135050980	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-1517	NM_001172435	22930		NM_012233	ENSG00000115839	RAB3GAP1	MARTS2|P130|RAB3GAP|RAB3GAP130|WARBM1	RAB3 GTPase activating protein catalytic subunit 1	protein-coding
162944	chr3	49500651	49500950	+	0	NA	intron (NM_001177638, intron 2 of 3)	intron (NM_001177638, intron 2 of 3)	30533	NM_004393	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
32223	chr10	101815801	101816500	+	0	NA	intron (NM_001142434, intron 1 of 14)	AluSx3|SINE|Alu	2294	NM_012215	10724		NM_012215	ENSG00000198408	OGA	MEA5|MGEA5|NCOAT	O-GlcNAcase	protein-coding
109966	chr19	1390251	1391100	+	0	NA	intron (NM_001363602, intron 4 of 7)	MER33|DNA|hAT-Charlie	6768	NM_001363602	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
173740	chr4	16162001	16162200	+	0	NA	3' UTR (NM_153365, exon 14 of 14)	3' UTR (NM_153365, exon 14 of 14)	64371	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
218428	chr8	47735121	47735580	+	0	NA	exon (NM_001352959, exon 11 of 11)	exon (NM_001352959, exon 11 of 11)	2814	NM_005195	1052		NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT enhancer binding protein delta	protein-coding
211625	chr7	106042301	106043180	+	0	NA	Intergenic	Intergenic	69572	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
152967	chr22	23067871	23068030	+	0	NA	intron (NM_014433, intron 4 of 6)	intron (NM_014433, intron 4 of 6)	-2569	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
166815	chr3	122679021	122679790	+	0	NA	Intergenic	LTR84a|LTR|ERVL	-1434	NM_017554	54625		NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	poly(ADP-ribose) polymerase family member 14	protein-coding
225665	chr9	36460221	36460700	+	0	NA	Intergenic	Intergenic	-59262	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
80687	chr16	3046601	3047650	+	0	NA	intron (NM_022468, intron 1 of 9)	intron (NM_022468, intron 1 of 9)	564	NM_022468	64386		NM_004142	ENSG00000008516	MMP25	MMP-25|MMP20|MMP20A|MMPL1|MT-MMP 6|MT-MMP6|MT6-MMP|MT6MMP|MTMMP6	matrix metallopeptidase 25	protein-coding
128799	chr2	62332721	62333580	+	0	NA	Intergenic	L1MEd|LINE|L1	117629	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
21878	chr1	207753571	207753730	+	0	NA	intron (NM_172356, intron 1 of 10)	AluJb|SINE|Alu	1596	NM_172355	4179		NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding
582	chr1	1283021	1283300	+	0	NA	intron (NM_001130413, intron 4 of 17)	intron (NM_001130413, intron 4 of 17)	2724	NM_001130413	6339		NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	sodium channel epithelial 1 subunit delta	protein-coding
194191	chr6	32138821	32139300	+	0	NA	Intergenic	AluSx3|SINE|Alu	-8772	NM_022110	63943		NM_022110	ENSG00000204315	FKBPL	DIR1|NG7|WISP39	FKBP prolyl isomerase like	protein-coding
2635	chr1	10306671	10307030	+	0	NA	3' UTR (NM_001365953, exon 21 of 21)	3' UTR (NM_001365953, exon 21 of 21)	7884	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
48367	chr12	9434101	9434580	+	0	NA	intron (NR_033399, intron 5 of 26)	intron (NR_033399, intron 5 of 26)	13832	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
56210	chr12	111546801	111547600	+	0	NA	intron (NM_002973, intron 5 of 24)	AluSg4|SINE|Alu	52115	NM_001372574	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
214046	chr7	143363751	143364250	+	0	NA	intron (NM_001371250, intron 1 of 6)	intron (NM_001371250, intron 1 of 6)	-1287	NM_001371251	9715		NM_014690	ENSG00000159784	FAM131B	-	family with sequence similarity 131 member B	protein-coding
189771	chr5	176653121	176654050	+	0	NA	intron (NM_001366492, intron 2 of 6)	intron (NM_001366492, intron 2 of 6)	6101	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
149243	chr21	25638921	25640330	+	0	NA	non-coding (NR_072999, exon 1 of 10)	non-coding (NR_072999, exon 1 of 10)	343	NM_001270407	58494		NM_021219	ENSG00000154721	JAM2	C21orf43|CD322|IBGC8|JAM-B|JAMB|PRO245|VE-JAM|VEJAM	junctional adhesion molecule 2	protein-coding
38732	chr11	46845371	46846530	+	0	NA	promoter-TSS (NR_038909)	promoter-TSS (NR_038909)	330	NM_001008938	9793		NM_014756	ENSG00000175216	CKAP5	CHTOG|MSPS|TOG|TOGp|ch-TOG	cytoskeleton associated protein 5	protein-coding
149327	chr21	29044551	29044650	+	0	NA	intron (NM_006447, intron 13 of 17)	AluSx|SINE|Alu	19932	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
25179	chr10	5466471	5466630	+	0	NA	Intergenic	Intergenic	19941	NM_005863	10276		NM_005863	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
30326	chr10	76051251	76051350	+	0	NA	intron (NM_032024, intron 3 of 5)	intron (NM_032024, intron 3 of 5)	268539	NM_032024	83938		NM_032024	ENSG00000148655	LRMDA	C10orf11|CDA017	leucine rich melanocyte differentiation associated	protein-coding
21171	chr1	203767571	203767730	+	0	NA	intron (NM_017773, intron 1 of 4)	L1M2|LINE|L1	-1988	NM_001282878	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
86433	chr16	66888571	66888730	+	0	NA	3' UTR (NM_001329928, exon 3 of 3)	3' UTR (NM_001329928, exon 3 of 3)	8135	NM_020786	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
24146	chr1	235850971	235851330	+	0	NA	intron (NM_001301365, intron 1 of 52)	L1PB1|LINE|L1	1910	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
87236	chr16	69708351	69708650	+	0	NA	TTS (NM_001025434)	TTS (NM_001025434)	175	NR_145753	109617018		NR_145753		SNORD13H	-	small nucleolar RNA, C/D box 13H	snoRNA
198368	chr6	105456601	105456950	+	0	NA	Intergenic	Intergenic	-53693	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
141278	chr2	240060951	240061250	+	0	NA	Intergenic	MER21-int|LTR|ERVL	-15028	NM_173351	150681		NM_173351	ENSG00000178586	OR6B3	OR6B3P|OR6B3Q	olfactory receptor family 6 subfamily B member 3	protein-coding
77011	chr15	78506021	78506280	+	0	NA	Intergenic	Intergenic	-1414	NM_001083612	123688		NM_001013619	ENSG00000188266	HYKK	AGPHD1	hydroxylysine kinase	protein-coding
43731	chr11	86057821	86058080	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	11134	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
93267	chr17	18038551	18040580	+	0	NA	promoter-TSS (NM_145691)	promoter-TSS (NM_145691)	157	NM_024052	79018		NM_024052	ENSG00000141034	GID4	C17orf39|VID2|VID24	GID complex subunit 4 homolog	protein-coding
220638	chr8	100949831	100954850	+	0	NA	promoter-TSS (NM_145690)	promoter-TSS (NM_145690)	-320	NM_145690	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
104829	chr17	81819051	81819350	+	0	NA	Intergenic	Intergenic	14091	NM_001288798	348262		NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
121697	chr19	47571471	47572100	+	0	NA	intron (NM_001277075, intron 2 of 16)	intron (NM_001277075, intron 2 of 16)	1363	NM_001277075	84215		NM_032255	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
40344	chr11	63945601	63946230	+	0	NA	exon (NM_001300800, exon 2 of 8)	exon (NM_001300800, exon 2 of 8)	6584	NM_001300800	79829		NM_024771	ENSG00000110583	NAA40	NAT11|NatD|PATT1|hNatD	N-alpha-acetyltransferase 40, NatD catalytic subunit	protein-coding
234827	chrX	24186421	24186680	+	0	NA	intron (NM_001330327, intron 6 of 10)	AluJr|SINE|Alu	36821	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
138402	chr2	204892471	204892830	+	0	NA	intron (NM_205863, intron 2 of 21)	L2b|LINE|L2	347175	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
140966	chr2	237926271	237926630	+	0	NA	Intergenic	AluJb|SINE|Alu	-40495	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
158156	chr22	50195071	50195450	+	0	NA	intron (NM_001378762, intron 5 of 9)	intron (NM_001378762, intron 5 of 9)	4673	NM_001320487	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
154678	chr22	36366171	36367200	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	21282	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
48678	chr12	10559121	10559600	+	0	NA	TTS (NR_146455)	TTS (NR_146455)	5981	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
27285	chr10	30358301	30358500	+	0	NA	Intergenic	Intergenic	-9122	NM_018109	55149		NM_018109	ENSG00000107951	MTPAP	PAPD1|SPAX4|TENT6	mitochondrial poly(A) polymerase	protein-coding
75272	chr15	65033761	65034650	+	0	NA	Intergenic	Intergenic	-4566	NM_139242	123263		NM_139242	ENSG00000103707	MTFMT	COXPD15|FMT1|MC1DN27	mitochondrial methionyl-tRNA formyltransferase	protein-coding
236151	chrX	63745121	63745380	+	0	NA	intron (NM_001369036, intron 1 of 10)	intron (NM_001369036, intron 1 of 10)	9873	NM_001353928	23229		NM_015185	ENSG00000131089	ARHGEF9	COLLYBISTIN|DEE8|EIEE8|HPEM-2|PEM-2|PEM2	Cdc42 guanine nucleotide exchange factor 9	protein-coding
179039	chr4	165229551	165229850	+	0	NA	intron (NM_001331024, intron 3 of 13)	intron (NM_001331024, intron 3 of 13)	19681	NM_001161522	11275		NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
225801	chr9	37528521	37529580	+	0	NA	intron (NM_012166, intron 5 of 10)	intron (NM_012166, intron 5 of 10)	43102	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
193224	chr6	29847901	29848900	+	0	NA	Intergenic	Intergenic	20575	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
100243	chr17	59361401	59361680	+	0	NA	intron (NM_001005404, intron 2 of 4)	L2b|LINE|L2	-4543	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
215854	chr8	7237351	7237530	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-9252	NR_168401	101928095		NR_168401		LOC101928095	-	uncharacterized LOC101928095	ncRNA
20221	chr1	193157271	193157630	+	0	NA	intron (NM_024529, intron 10 of 16)	MER102a|DNA|hAT-Charlie	20947	NR_031691	100302163		NR_031691	ENSG00000221680	MIR1278	MIRN1278|hsa-mir-1278|mir-1278	microRNA 1278	ncRNA
226066	chr9	61864071	61864830	+	0	NA	Intergenic	Intergenic	-1835	NR_144466	105379807		NR_144466		LOC105379807	-	uncharacterized LOC105379807	ncRNA
92571	chr17	9079421	9080250	+	0	NA	intron (NM_004822, intron 2 of 6)	intron (NM_004822, intron 2 of 6)	58325	NM_004822	9423		NM_004822	ENSG00000065320	NTN1	MRMV4|NET1|NTN1L	netrin 1	protein-coding
100327	chr17	59845851	59846930	+	0	NA	Intergenic	Intergenic	5124	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
230329	chr9	127978851	127978950	+	0	NA	intron (NM_001035254, intron 1 of 10)	AluSx1|SINE|Alu	2089	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
237741	chrX	129540121	129540800	+	0	NA	exon (NM_001587, exon 1 of 23)	exon (NM_001587, exon 1 of 23)	201	NM_000276	4952		NM_000276	ENSG00000122126	OCRL	DENT2|Dent-2|INPP5F|LOCR|NPHL2|OCRL-1|OCRL1	OCRL inositol polyphosphate-5-phosphatase	protein-coding
16517	chr1	154930671	154931230	+	0	NA	intron (NM_006556, intron 2 of 4)	AluJb|SINE|Alu	5769	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
94142	chr17	28332951	28334080	+	0	NA	intron (NM_001267774, intron 1 of 5)	intron (NM_001267774, intron 1 of 5)	1957	NM_001267774	90410		NM_174887	ENSG00000109083	IFT20	-	intraflagellar transport 20	protein-coding
12395	chr1	101290671	101291180	+	0	NA	Intergenic	Intergenic	-32912	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
14089	chr1	120888621	120889050	+	0	NA	promoter-TSS (NM_001143883)	promoter-TSS (NM_001143883)	-911	NM_001143883	653505		NM_001143883	ENSG00000263353	PPIAL4A	COAS-2|COAS2|PPIAL4|PPIAL4B	peptidylprolyl isomerase A like 4A	protein-coding
234545	chrX	19701471	19701630	+	0	NA	intron (NM_001353892, intron 4 of 17)	intron (NM_001353892, intron 4 of 17)	-30551	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
143683	chr20	32108001	32108430	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-1499	NM_014742	9777		NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
140998	chr2	238101671	238101830	+	0	NA	intron (NM_194312, intron 1 of 8)	intron (NM_194312, intron 1 of 8)	1410	NM_194312	339768		NM_194312	ENSG00000144488	ESPNL	-	espin like	protein-coding
19147	chr1	171559101	171560150	+	0	NA	intron (NM_015172, intron 19 of 33)	AluSq2|SINE|Alu	-60138	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
85834	chr16	57004171	57004330	+	0	NA	intron (NR_169520, intron 1 of 47)	intron (NR_169520, intron 1 of 47)	14693	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
123858	chr19	55252951	55253050	+	0	NA	intron (NM_014931, intron 1 of 23)	intron (NM_014931, intron 1 of 23)	6017	NM_014931	22870		NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding
144350	chr20	35002001	35002530	+	0	NA	TTS (NM_015638)	TTS (NM_015638)	-11793	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
78252	chr15	90814771	90814930	+	0	NA	intron (NM_001287248, intron 21 of 21)	intron (NM_001287248, intron 21 of 21)	-53738	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
162208	chr3	47015171	47015630	+	0	NA	Intergenic	Intergenic	3858	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
171322	chr3	195980801	195981000	+	0	NA	intron (NR_003264, intron 6 of 16)	L1MA9|LINE|L1	9379	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
54117	chr12	76455721	76456350	+	0	NA	intron (NM_001319652, intron 5 of 25)	intron (NM_001319652, intron 5 of 25)	-32750	NM_001319655	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
74787	chr15	63275571	63276050	+	0	NA	Intergenic	AluSz|SINE|Alu	-1740	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
117679	chr19	24095001	24095200	+	0	NA	intron (NM_001278662, intron 2 of 4)	L1PREC2|LINE|L1	7913	NM_203282	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
129005	chr2	64832671	64832830	+	0	NA	Intergenic	Intergenic	30881	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
92620	chr17	10079101	10079500	+	0	NA	intron (NM_201433, intron 1 of 13)	MER4B|LTR|ERV1	-42643	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
22537	chr1	222386001	222386200	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	162004	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
12360	chr1	101240501	101240900	+	0	NA	3' UTR (NM_001400, exon 2 of 2)	3' UTR (NM_001400, exon 2 of 2)	3681	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
201173	chr6	142950151	142951150	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-5474	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
182910	chr5	70449601	70449800	+	0	NA	non-coding (NR_033417, exon 15 of 15)	non-coding (NR_033417, exon 15 of 15)	34326	NM_001515	2966		NM_001515	ENSG00000145736	GTF2H2	BTF2|BTF2 p44|BTF2P44|T-BTF2P44|TFIIH|p44	general transcription factor IIH subunit 2	protein-coding
187355	chr5	141695321	141695580	+	0	NA	Intergenic	Intergenic	-13220	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
205056	chr7	6593271	6593630	+	0	NA	intron (NM_001303039, intron 2 of 6)	AluY|SINE|Alu	3429	NM_001303039	79034		NM_024067	ENSG00000146576	INTS15	C7orf26	integrator complex subunit 15	protein-coding
15243	chr1	149607071	149607380	+	0	NA	non-coding (NR_111951, exon 1 of 3)	non-coding (NR_111951, exon 1 of 3)	213	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
230023	chr9	127214201	127215250	+	0	NA	intron (NM_001190729, intron 16 of 17)	intron (NM_001190729, intron 16 of 17)	-48937	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
178947	chr4	159099801	159100430	+	0	NA	Intergenic	AluJr|SINE|Alu	-3936	NM_001351724	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
119477	chr19	40441271	40442050	+	0	NA	exon (NM_013368, exon 2 of 2)	exon (NM_013368, exon 2 of 2)	938	NM_013368	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
146674	chr20	50514751	50515230	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	4607	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138174	chr2	202642821	202644100	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	8491	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
210071	chr7	96414921	96415200	+	0	NA	Intergenic	Intergenic	88463	NR_163949	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
232325	chr9	135098551	135098650	+	0	NA	TTS (NM_006334)	TTS (NM_006334)	10932	NM_001282611	10439		NM_006334	ENSG00000130558	OLFM1	AMY|NOE1|NOELIN1|OlfA	olfactomedin 1	protein-coding
100570	chr17	62794751	62794850	+	0	NA	intron (NM_001288779, intron 2 of 11)	intron (NM_001288779, intron 2 of 11)	11840	NM_001100875	162333		NM_152598	ENSG00000173838	MARCHF10	MARCH-X|MARCH10|RNF190	membrane associated ring-CH-type finger 10	protein-coding
79200	chr16	340621	341200	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	11813	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
209148	chr7	75155521	75155780	+	0	NA	TTS (NR_003187)	TTS (NR_003187)	16348	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
154351	chr22	32660301	32660500	+	0	NA	intron (NM_133633, intron 5 of 11)	intron (NM_133633, intron 5 of 11)	-141305	NM_000362	7078		NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
45658	chr11	119015951	119016380	+	0	NA	TTS (NM_198489)	TTS (NM_198489)	2178	NM_001028	6230		NM_001028	ENSG00000118181	RPS25	S25|eS25	ribosomal protein S25	protein-coding
65749	chr14	53216901	53217950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	64071	NR_110062	101927620		NR_110062	ENSG00000258731	DDHD1-DT	-	DDHD1 divergent transcript	ncRNA
179333	chr4	182831971	182832130	+	0	NA	Intergenic	Intergenic	85203	NM_001351747	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
61741	chr13	74174621	74175230	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-40996	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
226098	chr9	62835071	62835430	+	0	NA	non-coding (NR_135128, exon 1 of 1)	non-coding (NR_135128, exon 1 of 1)	3096	NR_135128	100132249		NR_135128		LOC100132249	-	uncharacterized LOC100132249	ncRNA
42796	chr11	72789501	72789900	+	0	NA	intron (NM_006645, intron 1 of 6)	intron (NM_006645, intron 1 of 6)	4005	NM_006645	10809		NM_006645	ENSG00000214530	STARD10	CGI-52|NY-CO-28|PCTP2|SDCCAG28	StAR related lipid transfer domain containing 10	protein-coding
64776	chr14	34682851	34683150	+	0	NA	Intergenic	Intergenic	30817	NM_021914	1073		NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding
78434	chr15	92806001	92806200	+	0	NA	Intergenic	FLAM_C|SINE|Alu	10616	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
167434	chr3	129047171	129047400	+	0	NA	Intergenic	Intergenic	-13494	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
109998	chr19	1423021	1423500	+	0	NA	intron (NM_001352035, intron 6 of 10)	intron (NM_001352035, intron 6 of 10)	-15136	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
168622	chr3	149654921	149655180	+	0	NA	intron (NM_001348362, intron 5 of 9)	AluY|SINE|Alu	2975	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
9432	chr1	48498271	48498650	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-26252	NM_001286239	54558		NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
425	chr1	1086171	1087050	+	0	NA	intron (NM_017891, intron 6 of 9)	intron (NM_017891, intron 6 of 9)	-12304	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
10989	chr1	84497751	84498200	+	0	NA	TTS (NM_005274)	TTS (NM_005274)	-8411	NM_001310156	100505741		NM_022354	ENSG00000122432	SPATA1	SP-2|SPAP1	spermatogenesis associated 1	protein-coding
159571	chr3	14948001	14949430	+	0	NA	promoter-TSS (NR_046255)	promoter-TSS (NR_046255)	-274	NR_046251	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
53371	chr12	64672571	64673300	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-50330	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
60563	chr13	41498271	41498630	+	0	NA	Intergenic	Intergenic	40900	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
206655	chr7	36280601	36281080	+	0	NA	intron (NM_030636, intron 3 of 7)	intron (NM_030636, intron 3 of 7)	86400	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
130344	chr2	85001421	85002280	+	0	NA	intron (NM_020122, intron 1 of 6)	Tigger3a|DNA|TcMar-Tigger	30689	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
143784	chr20	32447551	32448100	+	0	NA	intron (NM_080616, intron 7 of 7)	intron (NM_080616, intron 7 of 7)	35665	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
28159	chr10	43575971	43576620	+	0	NA	Intergenic	L2|LINE|L2	-1677	NM_001099283	8187		NM_005674	ENSG00000196793	ZNF239	HOK-2|MOK2	zinc finger protein 239	protein-coding
53902	chr12	71439971	71440500	+	0	NA	exon (NM_001277227, exon 1 of 17)	exon (NM_001277227, exon 1 of 17)	437	NM_001277227	8549		NM_003667	ENSG00000139292	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine rich repeat containing G protein-coupled receptor 5	protein-coding
91137	chr17	3738631	3739580	+	0	NA	intron (NM_002208, intron 20 of 30)	L2a|LINE|L2	15202	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
9765	chr1	53408071	53408750	+	0	NA	Intergenic	Intergenic	31610	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
216882	chr8	22650951	22651450	+	0	NA	intron (NR_156436, intron 1 of 9)	HAL1|LINE|L1	-8991	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
204844	chr7	5778101	5778530	+	0	NA	intron (NM_001377156, intron 1 of 17)	L2b|LINE|L2	3348	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
206905	chr7	37920471	37921230	+	0	NA	promoter-TSS (NM_001242948)	promoter-TSS (NM_001242948)	210	NM_017549	54749		NM_017549	ENSG00000086289	EPDR1	EPDR|MERP-1|MERP1|UCC1	ependymin related 1	protein-coding
10238	chr1	63330571	63330730	+	0	NA	Intergenic	Intergenic	-3666	NR_106716	102464823		NR_106716	ENSG00000275836	MIR6068	hsa-mir-6068	microRNA 6068	ncRNA
153135	chr22	23754071	23754430	+	0	NA	intron (NM_013378, intron 1 of 1)	intron (NM_013378, intron 1 of 1)	175	NM_013378	29802		NM_013378	ENSG00000128218	VPREB3	8HS20|N27C7-2	V-set pre-B cell surrogate light chain 3	protein-coding
146773	chr20	50908601	50908800	+	0	NA	intron (NM_001347511, intron 1 of 4)	AluY|SINE|Alu	1091	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
185620	chr5	131487121	131487700	+	0	NA	intron (NM_016340, intron 15 of 27)	LTR12|LTR|ERV1	147819	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
198396	chr6	105733601	105733830	+	0	NA	Intergenic	Intergenic	-330633	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
149570	chr21	33235971	33236330	+	0	NA	intron (NM_001385055, intron 1 of 9)	intron (NM_001385055, intron 1 of 9)	6212	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
1381	chr1	2533001	2533600	+	0	NA	Intergenic	Intergenic	-3037	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
85017	chr16	31569571	31569730	+	0	NA	promoter-TSS (NR_027011)	promoter-TSS (NR_027011)	-126	NR_027011	440359		NR_027011		YBX3P1	CSDAP1	Y-box binding protein 3 pseudogene 1	pseudo
1466	chr1	2685001	2685200	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-52084	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
75625	chr15	67146751	67147630	+	0	NA	intron (NM_001145103, intron 1 of 8)	intron (NM_001145103, intron 1 of 8)	9169	NM_001145103	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
186241	chr5	134408001	134408800	+	0	NA	intron (NM_080656, intron 2 of 2)	AluY|SINE|Alu	3481	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
61978	chr13	79522571	79522800	+	0	NA	intron (NM_019080, intron 2 of 7)	MLT1G3|LTR|ERVL-MaLR	-41454	NR_046685	100874208		NR_046685	ENSG00000232132	NDFIP2-AS1	-	NDFIP2 antisense RNA 1	ncRNA
47300	chr12	1667971	1668130	+	0	NA	Intergenic	L1MB3|LINE|L1	-7670	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
143266	chr20	25146901	25147330	+	0	NA	intron (NR_027092, intron 1 of 3)	LTR16C|LTR|ERVL	878	NR_027093	284798		NR_027091	ENSG00000230725	LOC284798	-	uncharacterized LOC284798	ncRNA
114972	chr19	14018771	14019530	+	0	NA	Intergenic	AluJb|SINE|Alu	-8998	NM_001311197	117579		NM_080864	ENSG00000171136	RLN3	H3|RXN3|ZINS4|insl7	relaxin 3	protein-coding
72919	chr15	40371121	40371780	+	0	NA	3' UTR (NM_033510, exon 8 of 8)	3' UTR (NM_033510, exon 8 of 8)	-11271	NM_033286	90417		NM_033286	ENSG00000128944	KNSTRN	C15orf23|HSD11|ROCHIS|SKAP|TRAF4AF1	kinetochore localized astrin (SPAG5) binding protein	protein-coding
91339	chr17	4479471	4479830	+	0	NA	intron (NM_001320449, intron 8 of 10)	intron (NM_001320449, intron 8 of 10)	-19231	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
95331	chr17	35744601	35744800	+	0	NA	3' UTR (NM_139285, exon 6 of 6)	3' UTR (NM_139285, exon 6 of 6)	8539	NM_139285	246176		NM_139285	ENSG00000270765	GAS2L2	CILD41|GAR17	growth arrest specific 2 like 2	protein-coding
43120	chr11	75243121	75243600	+	0	NA	3' UTR (NM_001195528, exon 1 of 1)	3' UTR (NM_001195528, exon 1 of 1)	2586	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
206532	chr7	35036201	35036800	+	0	NA	intron (NM_015283, intron 1 of 21)	intron (NM_015283, intron 1 of 21)	985	NM_001366673	23333		NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like C-mannosyltransferase 1	protein-coding
70604	chr14	102788971	102789730	+	0	NA	intron (NM_001199427, intron 1 of 7)	L1MB5|LINE|L1	11871	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
35232	chr11	834721	835800	+	0	NA	intron (NM_139029, intron 2 of 8)	intron (NM_139029, intron 2 of 8)	2308	NM_139029	977		NM_004357	ENSG00000177697	CD151	EBS7|GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24	CD151 molecule (Raph blood group)	protein-coding
190924	chr6	2860951	2862080	+	0	NA	intron (NR_033851, intron 1 of 1)	LTR12C|LTR|ERV1	-7408	NR_039788	100616285		NR_039788	ENSG00000266750	MIR4645	mir-4645	microRNA 4645	ncRNA
103943	chr17	79848321	79848780	+	0	NA	Intergenic	Intergenic	-9110	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
187967	chr5	149422651	149422950	+	0	NA	intron (NR_105060, intron 2 of 4)	intron (NR_105060, intron 2 of 4)	-6118	NR_029684	406935		NR_029684	ENSG00000284182	MIR143	MIRN143|mir-143	microRNA 143	ncRNA
176566	chr4	98641551	98642080	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	16796	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
185174	chr5	119355321	119356700	+	0	NA	promoter-TSS (NM_014350)	promoter-TSS (NM_014350)	-9	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
26293	chr10	14956001	14956200	+	0	NA	Intergenic	Intergenic	-1668	NR_146960	64421		NM_022487	ENSG00000152457	DCLRE1C	A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C	DNA cross-link repair 1C	protein-coding
4636	chr1	22122321	22122730	+	0	NA	intron (NM_030761, intron 2 of 4)	intron (NM_030761, intron 2 of 4)	20572	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
557	chr1	1248951	1249630	+	0	NA	Intergenic	Intergenic	-2568	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
35454	chr11	1458221	1460000	+	0	NA	intron (NM_001256629, intron 19 of 19)	intron (NM_001256629, intron 19 of 19)	21776	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
28357	chr10	47087671	47088030	+	0	NA	Intergenic	Intergenic	176128	NM_001042358	26095		NM_015605	ENSG00000204179	PTPN20	CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1	protein tyrosine phosphatase non-receptor type 20	protein-coding
27496	chr10	32262051	32262550	+	0	NA	Intergenic	AluSp|SINE|Alu	84858	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
201720	chr6	149748921	149750700	+	0	NA	promoter-TSS (NM_001360456)	promoter-TSS (NM_001360456)	69	NM_001360456	5110		NM_005389	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
50442	chr12	47708751	47708850	+	0	NA	TTS (NM_001172439)	TTS (NM_001172439)	-2739	NM_001146075	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
229539	chr9	122867121	122867580	+	0	NA	intron (NM_018835, intron 9 of 17)	SVA_D|Retroposon|SVA	12969	NR_003071	692206		NR_003071	ENSG00000212447	SNORD90	HBII-295	small nucleolar RNA, C/D box 90	snoRNA
29574	chr10	71698391	71699400	+	0	NA	intron (NM_001171931, intron 21 of 24)	MIR|SINE|MIR	20883	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
192195	chr6	17698271	17698830	+	0	NA	intron (NM_001278209, intron 1 of 22)	AluY|SINE|Alu	-7580	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
224708	chr9	21420221	21420480	+	0	NA	Intergenic	Intergenic	11233	NM_002170	3445		NM_002170	ENSG00000120242	IFNA8	IFN-alphaB	interferon alpha 8	protein-coding
186823	chr5	139397801	139398000	+	0	NA	intron (NM_194296, intron 4 of 5)	L2a|LINE|L2	-2796	NM_001161546	389333		NM_001161546	ENSG00000228672	PROB1	C5orf65	proline rich basic protein 1	protein-coding
34996	chr11	525451	525750	+	0	NA	Intergenic	Intergenic	9967	NM_176795	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
66714	chr14	64389551	64389930	+	0	NA	intron (NM_001364837, intron 1 of 26)	intron (NM_001364837, intron 1 of 26)	1387	NM_005956	4522		NM_005956	ENSG00000100714	MTHFD1	CIMAH|MTHFC|MTHFD	methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1	protein-coding
156121	chr22	40101051	40101150	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSc8|SINE|Alu	56283	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
96048	chr17	39464101	39464450	+	0	NA	intron (NM_016507, intron 1 of 13)	AluJb|SINE|Alu	2789	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
66675	chr14	63934421	63934680	+	0	NA	intron (NM_015180, intron 2 of 114)	intron (NM_015180, intron 2 of 114)	81546	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
55596	chr12	106750121	106750780	+	0	NA	intron (NM_213594, intron 16 of 17)	AluSx|SINE|Alu	-24232	NM_001351363	55188		NM_018157	ENSG00000111785	RIC8B	RIC8|hSyn	RIC8 guanine nucleotide exchange factor B	protein-coding
78772	chr15	99250801	99252250	+	0	NA	promoter-TSS (NM_001284400)	promoter-TSS (NM_001284400)	44	NM_001321677	123355		NM_144598	ENSG00000168904	LRRC28	-	leucine rich repeat containing 28	protein-coding
198431	chr6	106096421	106096680	+	0	NA	intron (NM_001198, intron 3 of 6)	intron (NM_001198, intron 3 of 6)	-2391	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
150359	chr21	42191851	42192350	+	0	NA	Intergenic	Intergenic	-7589	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
203193	chr6	167371871	167372230	+	0	NA	Intergenic	Intergenic	12460	NR_163193	6953		NM_004610	ENSG00000290751	TCP10L3	TCP10|TCP10A	t-complex 10 like 3 (pseudogene)	pseudo
214079	chr7	143416401	143417180	+	0	NA	intron (NR_033897, intron 2 of 4)	intron (NR_033897, intron 2 of 4)	-7934	NM_005232	2041		NM_005232	ENSG00000146904	EPHA1	EPH|EPHT|EPHT1	EPH receptor A1	protein-coding
97492	chr17	43879551	43879650	+	0	NA	intron (NM_001278381, intron 12 of 13)	intron (NM_001278381, intron 12 of 13)	21024	NM_001278376	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
165107	chr3	71580201	71580400	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	3428	NM_001349338	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
54319	chr12	89525421	89525600	+	0	NA	promoter-TSS (NR_146294)	promoter-TSS (NR_146294)	-60	NR_146294	109729146		NR_146294		POC1B-AS1	-	POC1B antisense RNA 1	ncRNA
64256	chr14	23182351	23182980	+	0	NA	intron (NM_012244, intron 1 of 10)	intron (NM_012244, intron 1 of 10)	995	NM_012244	23428		NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
212220	chr7	120950171	120951680	+	0	NA	intron (NM_198267, intron 1 of 4)	CpG	148	NM_019071	54556		NM_019071	ENSG00000071243	ING3	Eaf4|ING2|MEAF4|p47ING3	inhibitor of growth family member 3	protein-coding
154857	chr22	37123621	37124400	+	0	NA	Intergenic	L2c|LINE|L2	-14297	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
1851	chr1	6350271	6351100	+	0	NA	intron (NM_007274, intron 1 of 8)	intron (NM_007274, intron 1 of 8)	8244	NM_181866	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
238126	chrX	136673671	136673830	+	0	NA	intron (NM_004840, intron 19 of 21)	intron (NM_004840, intron 19 of 21)	25592	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
19349	chr1	173849421	173850030	+	0	NA	intron (NM_001365212, intron 12 of 15)	intron (NM_001365212, intron 12 of 15)	-13523	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
146120	chr20	48619421	48619680	+	0	NA	Intergenic	Intergenic	208449	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138620	chr2	209977671	209977900	+	0	NA	intron (NM_001371986, intron 58 of 64)	intron (NM_001371986, intron 58 of 64)	-24780	NM_006916	6120		NM_006916	ENSG00000197713	RPE	RPE2-1	ribulose-5-phosphate-3-epimerase	protein-coding
31798	chr10	98394551	98395050	+	0	NA	TTS (NR_031619)	TTS (NR_031619)	507	NR_031619	100302133		NR_031619	ENSG00000284415	MIR1287	MIRN1287|hsa-mir-1287|mir-1287	microRNA 1287	ncRNA
30096	chr10	73955401	73955600	+	0	NA	Intergenic	AluSx|SINE|Alu	-32723	NR_160938	414236		NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 putative open reading frame 55	ncRNA
214373	chr7	149714221	149716280	+	0	NA	5' UTR (NM_032534, exon 1 of 17)	5' UTR (NM_032534, exon 1 of 17)	239	NM_032534	84626		NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
5794	chr1	26547471	26548250	+	0	NA	intron (NM_001006665, intron 3 of 20)	intron (NM_001006665, intron 3 of 20)	2018	NM_001006665	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
51055	chr12	49820751	49821900	+	0	NA	intron (NM_001368048, intron 1 of 13)	intron (NM_001368048, intron 1 of 13)	7088	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
150053	chr21	37382571	37383280	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	15368	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
9409	chr1	47508051	47508780	+	0	NA	Intergenic	CpG	70371	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
68249	chr14	76986771	76987130	+	0	NA	Intergenic	Intergenic	27312	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
84704	chr16	30813871	30815330	+	0	NA	Intergenic	CpG	-27395	NM_001345970	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
152355	chr22	20461251	20461550	+	0	NA	intron (NR_033825, intron 3 of 5)	AluY|SINE|Alu	-23575	NM_182895	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
117990	chr19	33522951	33523250	+	0	NA	Intergenic	Intergenic	-1309	NM_000285	5184		NM_000285	ENSG00000124299	PEPD	PROLIDASE	peptidase D	protein-coding
157910	chr22	49770571	49770930	+	0	NA	Intergenic	Intergenic	53581	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
62647	chr13	101626671	101627930	+	0	NA	intron (NM_004791, intron 7 of 10)	L1MC1|LINE|L1	137348	NM_001271756	9358		NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
234321	chrX	13750951	13751050	+	0	NA	intron (NM_001330209, intron 9 of 21)	intron (NM_001330209, intron 9 of 21)	16252	NM_003611	8481		NM_003611	ENSG00000046651	OFD1	71-7A|CXorf5|JBTS10|RP23|SGBS2	OFD1 centriole and centriolar satellite protein	protein-coding
36853	chr11	10314701	10315100	+	0	NA	intron (NR_103765, intron 1 of 3)	MER57B2|LTR|ERV1	6587	NR_103765	100130460		NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
191407	chr6	8436771	8436930	+	0	NA	intron (NR_038979, intron 1 of 3)	intron (NR_038979, intron 1 of 3)	1227	NR_038980	100506207		NR_038979	ENSG00000285219	LOC100506207	-	uncharacterized LOC100506207	ncRNA
89761	chr16	89456101	89456300	+	0	NA	intron (NM_001256182, intron 1 of 13)	AluSx|SINE|Alu	25282	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
18743	chr1	167483671	167484250	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	34569	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
109612	chr19	940121	941630	+	0	NA	intron (NM_005224, intron 3 of 8)	intron (NM_005224, intron 3 of 8)	14840	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
237412	chrX	119615601	119616380	+	0	NA	TTS (NM_015129)	TTS (NM_015129)	-9566	NR_163972	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
100821	chr17	64087021	64087880	+	0	NA	intron (NM_001433, intron 2 of 21)	intron (NM_001433, intron 2 of 21)	42694	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
163526	chr3	51501951	51503130	+	0	NA	Intergenic	AluJb|SINE|Alu	-2525	NM_001349169	9730		NM_014703	ENSG00000145041	DCAF1	RIP|VPRBP	DDB1 and CUL4 associated factor 1	protein-coding
73366	chr15	42489921	42490180	+	0	NA	intron (NM_001381994, intron 1 of 20)	AluSx|SINE|Alu	1091	NM_001381998	64397		NM_022473	ENSG00000103994	ZNF106	SH3BP3|ZFP106|ZNF474	zinc finger protein 106	protein-coding
77640	chr15	85484151	85484450	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	103697	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
41013	chr11	65428011	65428700	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	5557	NR_131012	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
147911	chr20	62900091	62901200	+	0	NA	intron (NM_001193369, intron 6 of 15)	intron (NM_001193369, intron 6 of 15)	-17742	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
203342	chr6	170278321	170279380	+	0	NA	intron (NR_104177, intron 1 of 1)	intron (NR_104177, intron 1 of 1)	-2088	NR_126021	285804		NR_126021	ENSG00000271820	LOC285804	-	uncharacterized LOC285804	ncRNA
232541	chr9	136341951	136342050	+	0	NA	TTS (NM_015597)	TTS (NM_015597)	-11057	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
25668	chr10	8369501	8369900	+	0	NA	Intergenic	Intergenic	-101395	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
11940	chr1	93817071	93817430	+	0	NA	intron (NM_001261408, intron 2 of 13)	intron (NM_001261408, intron 2 of 13)	-29582	NR_030621	100126348		NR_030621	ENSG00000211575	MIR760	MIRN760|hsa-mir-760|mir-760	microRNA 760	ncRNA
126619	chr2	28799501	28799700	+	0	NA	3' UTR (NM_002709, exon 8 of 8)	3' UTR (NM_002709, exon 8 of 8)	-11234	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
123677	chr19	54965971	54966650	+	0	NA	promoter-TSS (NM_017852).6	promoter-TSS (NM_017852).6	-32	NM_001174082	55655		NM_017852	ENSG00000022556	NLRP2	CLR19.9|NALP2|NBS1|OZEMA18|PAN1|PYPAF2	NLR family pyrin domain containing 2	protein-coding
225307	chr9	34585121	34585780	+	0	NA	intron (NM_001207011, intron 1 of 9)	intron (NM_001207011, intron 1 of 9)	4274	NM_147164	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
75752	chr15	68327671	68327830	+	0	NA	intron (NM_001004439, intron 16 of 29)	intron (NM_001004439, intron 16 of 29)	50005	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
125231	chr2	10378151	10378750	+	0	NA	intron (NM_001258359, intron 1 of 4)	MLT1A|LTR|ERVL-MaLR	9686	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
90417	chr17	1341321	1341900	+	0	NA	Intergenic	MIRb|SINE|MIR	58612	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
185402	chr5	129093101	129093450	+	0	NA	Intergenic	Intergenic	-1474	NM_016048	51015		NM_016048	ENSG00000066583	ISOC1	CGI-111	isochorismatase domain containing 1	protein-coding
38474	chr11	45809401	45809800	+	0	NA	intron (NM_018389, intron 1 of 1)	intron (NM_018389, intron 1 of 1)	4451	NM_018389	55343		NM_018389	ENSG00000181830	SLC35C1	CDG2C|FUCT1	solute carrier family 35 member C1	protein-coding
25377	chr10	6478671	6479230	+	0	NA	intron (NM_001282644, intron 12 of 17)	intron (NM_001282644, intron 12 of 17)	101326	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
143298	chr20	25297771	25298130	+	0	NA	TTS (NM_002862)	TTS (NM_002862)	49865	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
9099	chr1	45163311	45163600	+	0	NA	intron (NM_020883, intron 1 of 13)	L1PA5|LINE|L1	43150	NM_020883	57643		NM_020883	ENSG00000162415	ZSWIM5	-	zinc finger SWIM-type containing 5	protein-coding
126787	chr2	30268401	30268730	+	0	NA	Intergenic	Intergenic	37031	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
12025	chr1	96966621	96966950	+	0	NA	Intergenic	Intergenic	-129138	NR_046590	100873932		NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	ncRNA
66222	chr14	61323951	61324330	+	0	NA	intron (NM_006255, intron 1 of 13)	MER5B|DNA|hAT-Charlie	2697	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
48169	chr12	7967821	7968480	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-31963	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
127463	chr2	42214871	42215230	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-44819	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
190042	chr5	177519701	177520330	+	0	NA	3' UTR (NM_001366499, exon 11 of 11)	3' UTR (NM_001366499, exon 11 of 11)	-3054	NM_016222	51428		NM_016222	ENSG00000183258	DDX41	ABS|MPLPF	DEAD-box helicase 41	protein-coding
99930	chr17	57102171	57102330	+	0	NA	intron (NM_001242903, intron 2 of 11)	(TTTGTT)n|Simple_repeat|Simple_repeat	6761	NM_001370427	8165		NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding
140612	chr2	233419621	233420430	+	0	NA	intron (NM_001377259, intron 1 of 27)	intron (NM_001377259, intron 1 of 27)	813	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
159820	chr3	16378851	16379380	+	0	NA	intron (NM_015150, intron 4 of 9)	intron (NM_015150, intron 4 of 9)	113903	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
149821	chr21	35015221	35016080	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	23776	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
217140	chr8	25460151	25460250	+	0	NA	intron (NM_152562, intron 1 of 14)	intron (NM_152562, intron 1 of 14)	967	NM_152562	157313		NM_152562	ENSG00000184661	CDCA2	PPP1R81|Repo-Man	cell division cycle associated 2	protein-coding
117646	chr19	23764351	23764950	+	0	NA	intron (NR_149352, intron 1 of 1)	AluSq2|SINE|Alu	1646	NR_149351	388524		NM_001005472	ENSG00000288920	RPSA2	37LRP|67LR|LBP/p40|LRP/LR|LamR|RPSAP58|RPSA_30_1642	ribosomal protein SA 2	protein-coding
176598	chr4	98992821	98993500	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2561	NM_015143	23173		NM_015143	ENSG00000164024	METAP1	MAP1A|MetAP1A	methionyl aminopeptidase 1	protein-coding
219553	chr8	78444821	78445550	+	0	NA	Intergenic	L1PA5|LINE|L1	-71155	NM_006823	5569		NM_006823	ENSG00000171033	PKIA	PRKACN1	cAMP-dependent protein kinase inhibitor alpha	protein-coding
190199	chr5	178213801	178214850	+	0	NA	intron (NM_153373, intron 10 of 12)	intron (NM_153373, intron 10 of 12)	9792	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
168400	chr3	142210971	142211130	+	0	NA	intron (NM_001039547, intron 3 of 15)	intron (NM_001039547, intron 3 of 15)	14535	NR_033289	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
63688	chr14	21088851	21089230	+	0	NA	3' UTR (NM_018071, exon 24 of 24)	3' UTR (NM_018071, exon 24 of 24)	9615	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
216750	chr8	22464601	22465180	+	0	NA	intron (NM_005605, intron 1 of 13)	MLT1H1|LTR|ERVL-MaLR	23812	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
49984	chr12	42141271	42141700	+	0	NA	intron (NM_173601, intron 1 of 7)	L1MA9|LINE|L1	3389	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
53400	chr12	64702321	64702780	+	0	NA	Intergenic	AluJr|SINE|Alu	56856	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
113121	chr19	8305451	8305550	+	0	NA	intron (NM_016579, intron 1 of 4)	AluSz|SINE|Alu	2858	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
121990	chr19	48509201	48509700	+	0	NA	exon (NM_001080434, exon 5 of 16)	exon (NM_001080434, exon 5 of 16)	3739	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
40383	chr11	64003201	64003530	+	0	NA	intron (NM_014067, intron 4 of 10)	AluSz|SINE|Alu	17512	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
53168	chr12	58425951	58426250	+	0	NA	Intergenic	Intergenic	-165602	NR_126341	100506869		NR_126341	ENSG00000258231	LOC100506869	-	uncharacterized LOC100506869	ncRNA
214097	chr7	143725721	143725980	+	0	NA	TTS (NM_001365428)	TTS (NM_001365428)	10004	NM_001130026	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
191044	chr6	3228851	3229180	+	0	NA	Intergenic	CpG-23130	-1362	NM_178012	347733		NM_178012	ENSG00000137285	TUBB2B	CDCBM7|PMGYSA|bA506K6.1	tubulin beta 2B class IIb	protein-coding
206113	chr7	27238121	27238580	+	0	NA	Intergenic	Intergenic	-4452	NM_001989	2128		NM_001989	ENSG00000106038	EVX1	EVX-1	even-skipped homeobox 1	protein-coding
142805	chr20	14337651	14337750	+	0	NA	promoter-TSS (NM_198391)	promoter-TSS (NM_198391)	-33	NM_013281	23767		NM_013281	ENSG00000125848	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding
46081	chr11	122832651	122833700	+	0	NA	Intergenic	L2a|LINE|L2	-5325	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
133173	chr2	112784451	112784550	+	0	NA	promoter-TSS (NM_000575)	promoter-TSS (NM_000575)	-7	NM_000575	3552		NM_000575	ENSG00000115008	IL1A	IL-1 alpha|IL-1A|IL1|IL1-ALPHA|IL1F1	interleukin 1 alpha	protein-coding
141614	chr2	241669421	241669700	+	0	NA	intron (NM_013325, intron 10 of 12)	AluY|SINE|Alu	17255	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
53861	chr12	70048771	70048930	+	0	NA	Intergenic	MIRb|SINE|MIR	-194180	NM_001199302	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
54611	chr12	92557901	92558100	+	0	NA	Intergenic	Intergenic	91321	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
45857	chr11	119481251	119481750	+	0	NA	intron (NR_034160, intron 3 of 3)	intron (NR_034160, intron 3 of 3)	-56515	NM_001311162	7070		NM_006288	ENSG00000154096	THY1	CD90|CDw90	Thy-1 cell surface antigen	protein-coding
75556	chr15	66946551	66946950	+	0	NA	intron (NR_135687, intron 1 of 2)	intron (NR_135687, intron 1 of 2)	9765	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
163722	chr3	52306821	52307080	+	0	NA	Intergenic	Intergenic	-9369	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
148684	chr21	6215301	6215500	+	0	NA	Intergenic	LTR43|LTR|ERV1	36370	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
136184	chr2	174495651	174495950	+	0	NA	Intergenic	Intergenic	-8712	NM_001267051	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
197075	chr6	54959351	54959450	+	0	NA	Intergenic	AluY|SINE|Alu	112629	NM_001010872	222584		NM_001010872	ENSG00000168143	FAM83B	C6orf143	family with sequence similarity 83 member B	protein-coding
88663	chr16	85656451	85656550	+	0	NA	exon (NM_014615, exon 7 of 16)	exon (NM_014615, exon 7 of 16)	32454	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
19641	chr1	180195571	180195730	+	0	NA	intron (NM_001004128, intron 11 of 12)	intron (NM_001004128, intron 11 of 12)	-34614	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
47471	chr12	3892621	3893380	+	0	NA	Intergenic	Intergenic	-19552	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
115881	chr19	16571321	16572830	+	0	NA	exon (NM_024881, exon 1 of 6)	exon (NM_024881, exon 1 of 6)	340	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
33836	chr10	124120121	124120580	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-26752	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
32356	chr10	102382821	102383430	+	0	NA	TTS (NM_001377140)	TTS (NM_001377140)	-10985	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
169012	chr3	152440351	152440850	+	0	NA	intron (NM_207296, intron 4 of 8)	THE1B|LTR|ERVL-MaLR	-99610	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
141713	chr2	241849921	241850180	+	0	NA	3' UTR (NM_005018, exon 5 of 5)	3' UTR (NM_005018, exon 5 of 5)	8844	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
111463	chr19	3897951	3898330	+	0	NA	intron (NM_033064, intron 2 of 12)	L1MB5|LINE|L1	17455	NM_033064	85300		NM_033064	ENSG00000167654	ATCAY	BNIP-H|CLAC	ATCAY kinesin light chain interacting caytaxin	protein-coding
59380	chr13	24746621	24746880	+	0	NA	Intergenic	CpG	-17419	NM_001184993	56163		NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
139169	chr2	219183201	219183400	+	0	NA	3' UTR (NM_024293, exon 9 of 9)	3' UTR (NM_024293, exon 9 of 9)	4591	NM_001321110	79137		NM_024293	ENSG00000144567	RETREG2	C2orf17|FAM134A|MAG-2	reticulophagy regulator family member 2	protein-coding
124025	chr19	55482671	55483030	+	0	NA	exon (NM_033113, exon 3 of 3)	exon (NM_033113, exon 3 of 3)	-2338	NM_020378	57106		NM_020378	ENSG00000090971	NAT14	KLP1	N-acetyltransferase 14 (putative)	protein-coding
12870	chr1	110196021	110196280	+	0	NA	intron (NM_001010898, intron 10 of 11)	intron (NM_001010898, intron 10 of 11)	13837	NR_046546	100873974		NR_046546		KCNC4-DT	KCNC4-AS1|LINC02586	KCNC4 divergent transcript	ncRNA
209167	chr7	75285271	75285430	+	0	NA	intron (NM_001382563, intron 4 of 6).4	intron (NM_001382563, intron 4 of 6).4	4560	NM_001382563	105180390		NM_001382563	ENSG00000286038	SPDYE13	SPDYE13P	speedy/RINGO cell cycle regulator family member E13	protein-coding
125423	chr2	11774421	11774800	+	0	NA	intron (NM_145693, intron 5 of 19)	intron (NM_145693, intron 5 of 19)	7166	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
95639	chr17	37791321	37791600	+	0	NA	Intergenic	Intergenic	-46401	NM_000458	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
17886	chr1	160080251	160081900	+	0	NA	promoter-TSS (NM_004983)	promoter-TSS (NM_004983)	-463	NM_004983	3765		NM_004983	ENSG00000162728	KCNJ9	GIRK3|KIR3.3	potassium inwardly rectifying channel subfamily J member 9	protein-coding
91631	chr17	5416801	5417030	+	0	NA	intron (NM_002532, intron 1 of 16)	AluJb|SINE|Alu	-2726	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
89296	chr16	88708251	88709130	+	0	NA	intron (NM_001318513, intron 2 of 13)	intron (NM_001318513, intron 2 of 13)	2187	NM_001012762	348180		NM_001012759	ENSG00000174177	CTU2	C16orf84|MFRG|NCS2|UPF0432	cytosolic thiouridylase subunit 2	protein-coding
178968	chr4	159939301	159939550	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-161641	NR_146278	109729132		NR_146278		LINC02233	-	long intergenic non-protein coding RNA 2233	ncRNA
180785	chr5	32211151	32211480	+	0	NA	Intergenic	Intergenic	-36996	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
21924	chr1	207848171	207848630	+	0	NA	Intergenic	Intergenic	-25697	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
152660	chr22	21574501	21575180	+	0	NA	intron (NR_046082, intron 1 of 3)	AluSg|SINE|Alu	7126	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
142661	chr20	5848521	5849380	+	0	NA	intron (NM_001303478, intron 3 of 3)	intron (NM_001303478, intron 3 of 3)	-62560	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
143032	chr20	21105201	21106330	+	0	NA	intron (NR_147212, intron 1 of 2)	CpG	593	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
120543	chr19	44916251	44916350	+	0	NA	exon (NM_001321066, exon 4 of 5)	exon (NM_001321066, exon 4 of 5)	1628	NM_001379687	341		NM_001645	ENSG00000130208	APOC1	Apo-CI|ApoC-I|apo-CIB|apoC-IB	apolipoprotein C1	protein-coding
145708	chr20	45031021	45031630	+	0	NA	intron (NM_006282, intron 10 of 10)	L2b|LINE|L2	64813	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
148783	chr21	8217401	8218800	+	0	NA	non-coding (NR_146144, exon 1 of 1)	non-coding (NR_146144, exon 1 of 1)	4212	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
154214	chr22	31501771	31501950	+	0	NA	intron (NM_001258326, intron 1 of 30)	MER6A|DNA|TcMar-Tigger	5324	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
114294	chr19	11736851	11737150	+	0	NA	intron (NM_001080493, intron 1 of 3)	intron (NM_001080493, intron 1 of 3)	1946	NM_001297610	55552		NM_017507	ENSG00000197933	ZNF823	HSZFP36	zinc finger protein 823	protein-coding
218872	chr8	60527221	60527750	+	0	NA	intron (NM_001242644, intron 1 of 6)	THE1D|LTR|ERVL-MaLR	10498	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
221140	chr8	119208071	119208500	+	0	NA	promoter-TSS (NM_052886)	promoter-TSS (NM_052886)	-78	NM_052886	114569		NM_052886	ENSG00000147676	MAL2	-	mal, T cell differentiation protein 2	protein-coding
104410	chr17	81055371	81056650	+	0	NA	intron (NM_001385148, intron 2 of 13)	intron (NM_001385148, intron 2 of 13)	-1724	NM_001385147	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
22251	chr1	212618821	212619150	+	0	NA	intron (NM_001206484, intron 4 of 4)	intron (NM_001206484, intron 4 of 4)	3967	NM_001206486	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
121646	chr19	47481021	47481730	+	0	NA	intron (NM_007059, intron 4 of 11)	intron (NM_007059, intron 4 of 11)	2844	NR_111923	11133		NM_007059	ENSG00000118162	KPTN	2E4|KICS4|MRT41	kaptin, actin binding protein	protein-coding
152589	chr22	21175301	21175500	+	0	NA	intron (NR_165621, intron 4 of 11)	L1MC2|LINE|L1	7535	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
974	chr1	1803321	1803980	+	0	NA	intron (NM_001282539, intron 6 of 10)	intron (NM_001282539, intron 6 of 10)	-23619	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
21677	chr1	206707651	206708400	+	0	NA	intron (NM_032960, intron 1 of 9)	MIR3|SINE|MIR	23120	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
55981	chr12	110135151	110135250	+	0	NA	intron (NR_144949, intron 5 of 18)	intron (NR_144949, intron 5 of 18)	10843	NR_144951	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
80888	chr16	3671271	3671630	+	0	NA	intron (NM_016292, intron 11 of 17)	intron (NM_016292, intron 11 of 17)	16746	NM_001351825	1773		NM_005223	ENSG00000213918	DNASE1	DNL1|DRNI	deoxyribonuclease 1	protein-coding
51989	chr12	53959351	53959650	+	0	NA	TTS (NM_173860)	TTS (NM_173860)	4597	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
167844	chr3	133947851	133947950	+	0	NA	intron (NM_005630, intron 8 of 13)	intron (NM_005630, intron 8 of 13)	-18088	NR_161373	80111		NM_025041	ENSG00000288547	C3orf36	-	chromosome 3 putative open reading frame 36	ncRNA
4030	chr1	18943601	18944050	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	12851	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
146218	chr20	48792871	48793030	+	0	NA	intron (NM_020820, intron 1 of 39)	AluSz|SINE|Alu	35049	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
87125	chr16	68843171	68844630	+	0	NA	intron (NM_024562, intron 1 of 17)	CpG	369	NM_024562	79613		NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog	protein-coding
182789	chr5	68460121	68460400	+	0	NA	Intergenic	MIR3|SINE|MIR	167683	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
90650	chr17	1672271	1672600	+	0	NA	intron (NM_006445, intron 24 of 42)	AluSx1|SINE|Alu	12432	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
109809	chr19	1159821	1160380	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	14168	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
206736	chr7	36641921	36643200	+	0	NA	intron (NM_001177506, intron 4 of 21)	MLT1C|LTR|ERVL-MaLR	-42440	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
212118	chr7	116219321	116219780	+	0	NA	intron (NM_015641, intron 1 of 6)	intron (NM_015641, intron 1 of 6)	-3403	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
178996	chr4	163501101	163501300	+	0	NA	intron (NM_018352, intron 1 of 6)	intron (NM_018352, intron 1 of 6)	6510	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
161875	chr3	45911851	45912550	+	0	NA	intron (NM_001276379, intron 2 of 9)	L1ME4b|LINE|L1	3524	NM_001276378	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
176762	chr4	102345001	102346550	+	0	NA	promoter-TSS (NM_001135146)	promoter-TSS (NM_001135146)	-293	NM_001135146	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
80181	chr16	2124871	2125050	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-8159	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
155406	chr22	38374101	38375030	+	0	NA	intron (NM_001289912, intron 3 of 14)	L1M2c|LINE|L1	24350	NM_001289912	102800317		NM_001289912	ENSG00000283900	TPTEP2-CSNK1E	LOC400927-CSNK1E	TPTEP2-CSNK1E readthrough	protein-coding
173518	chr4	9693721	9693980	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	-87784	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
204434	chr7	3157571	3157730	+	0	NA	intron (NR_126024, intron 2 of 3)	MIRc|SINE|MIR	923	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
161340	chr3	40204371	40204980	+	0	NA	intron (NM_015460, intron 10 of 16)	LTR81AB|LTR|Gypsy	104664	NM_001284426	25924		NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
51238	chr12	50925401	50925830	+	0	NA	intron (NM_014033, intron 1 of 1)	intron (NM_014033, intron 1 of 1)	600	NM_014033	25840		NM_014033	ENSG00000185432	TMT1A	AAM-B|AAMB|METTL7A	thiol methyltransferase 1A	protein-coding
135152	chr2	157471101	157471530	+	0	NA	Intergenic	Intergenic	-27226	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
120270	chr19	42742001	42742200	+	0	NA	Intergenic	Intergenic	-1619	NM_021016	5671		NM_021016	ENSG00000221826	PSG3	-	pregnancy specific beta-1-glycoprotein 3	protein-coding
150585	chr21	43262511	43262850	+	0	NA	Intergenic	Intergenic	69359	NR_103713	100126693		NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
185927	chr5	132873101	132873300	+	0	NA	promoter-TSS (NM_052971)	promoter-TSS (NM_052971)	-468	NM_052971	116842		NM_052971	ENSG00000164406	LEAP2	LEAP-2	liver enriched antimicrobial peptide 2	protein-coding
61824	chr13	75763601	75763800	+	0	NA	intron (NM_001330583, intron 2 of 28)	intron (NM_001330583, intron 2 of 28)	3039	NM_015842	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
126802	chr2	30405021	30405280	+	0	NA	Intergenic	Intergenic	-42096	NM_001304446	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
190177	chr5	178164071	178164630	+	0	NA	Intergenic	Intergenic	-10390	NM_001034833	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
76664	chr15	75687751	75688050	+	0	NA	exon (NM_001897, exon 3 of 10)	exon (NM_001897, exon 3 of 10)	24948	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
219085	chr8	65837001	65837200	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	4964	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
198347	chr6	104940971	104941630	+	0	NA	promoter-TSS (NR_046407)	promoter-TSS (NR_046407)	-773	NR_046407	100113403		NR_046407	ENSG00000203809	LIN28B-AS1	C6orf220|LINC00577|dJ439I14.1	LIN28B antisense RNA 1	ncRNA
32405	chr10	102441001	102441200	+	0	NA	Intergenic	AluJo|SINE|Alu	4588	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B|mir-146b	microRNA 146b	ncRNA
32891	chr10	110156401	110157850	+	0	NA	Intergenic	Intergenic	-5145	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
78576	chr15	93029051	93029150	+	0	NA	Intergenic	Intergenic	44056	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
55792	chr12	108635201	108636900	+	0	NA	TTS (NR_039717)	TTS (NR_039717)	240	NR_039717	100616240		NR_039717	ENSG00000284388	MIR4496	-	microRNA 4496	ncRNA
141136	chr2	239163921	239164880	+	0	NA	intron (NM_006037, intron 5 of 26)	intron (NM_006037, intron 5 of 26)	31057	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
88009	chr16	80998251	80998350	+	0	NA	promoter-TSS (NM_001351973)	promoter-TSS (NM_001351973)	-624	NM_001351973	56942		NM_020188	ENSG00000103121	CMC2	2310061C15Rik|C16orf61|DC13	C-X9-C motif containing 2	protein-coding
48877	chr12	12472301	12473100	+	0	NA	TTS (NM_030640)	TTS (NM_030640)	90163	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
71060	chr14	104813221	104813680	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-7751	NR_024396	196872		NM_152646	ENSG00000258701	VESTAR	LINC00638	VEGFC mRNA stability associated lncRNA	ncRNA
199933	chr6	127898751	127899880	+	0	NA	intron (NM_001164687, intron 1 of 5).2	L1M5|LINE|L1	1766	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
140809	chr2	236375151	236375250	+	0	NA	intron (NM_001270585, intron 13 of 18)	intron (NM_001270585, intron 13 of 18)	-110855	NM_212556	401036		NM_212556	ENSG00000182177	ASB18	ASB-18	ankyrin repeat and SOCS box containing 18	protein-coding
198223	chr6	98840471	98840700	+	0	NA	Intergenic	Intergenic	6011	NM_005604	5454		NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
31433	chr10	95800071	95800650	+	0	NA	intron (NR_038444, intron 4 of 5)	MER11A|LTR|ERVK	44197	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
94218	chr17	28641751	28642250	+	0	NA	exon (NM_001321560, exon 7 of 39)	exon (NM_001321560, exon 7 of 39)	3158	NM_001321560	9703		NM_014680	ENSG00000007202	BLTP2	BCOX|BCOX1|CT101|FMP27|Hob|KIAA0100	bridge-like lipid transfer protein family member 2	protein-coding
178640	chr4	152352701	152353300	+	0	NA	promoter-TSS (NM_018315)	promoter-TSS (NM_018315)	-174	NM_018315	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
68587	chr14	89448471	89448630	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	31196	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
99774	chr17	51116571	51117230	+	0	NA	intron (NM_001130527, intron 1 of 29)	L2a|LINE|L2	3968	NM_001130527	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
191922	chr6	15513571	15513930	+	0	NA	intron (NM_001267040, intron 16 of 17)	intron (NM_001267040, intron 16 of 17)	149278	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
32198	chr10	101768901	101769400	+	0	NA	TTS (NM_033163)	TTS (NM_033163)	6964	NM_033164	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
152948	chr22	22877421	22877980	+	0	NA	Intergenic	Intergenic	-8567	NR_049835	100847006		NR_049835	ENSG00000264824	MIR5571	-	microRNA 5571	ncRNA
15284	chr1	149809651	149809950	+	0	NA	intron (NM_001161334, intron 1 of 1)	intron (NM_001161334, intron 1 of 1)	2570	NM_001024599	440689		NM_001024599	ENSG00000203814	H2BC18	HIST2H2BF	H2B clustered histone 18	protein-coding
182617	chr5	66174551	66174650	+	0	NA	intron (NM_139168, intron 10 of 12)	intron (NM_139168, intron 10 of 12)	29765	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
144307	chr20	34743101	34743300	+	0	NA	exon (NM_014071, exon 11 of 15)	exon (NM_014071, exon 11 of 15)	38481	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
34581	chr10	133241201	133242200	+	0	NA	3' UTR (NM_014468, exon 3 of 3)	3' UTR (NM_014468, exon 3 of 3)	3845	NM_014468	27287		NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
123699	chr19	55021121	55021450	+	0	NA	intron (NM_001256017, intron 4 of 6).2	AluSx1|SINE|Alu	16979	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
210893	chr7	101173651	101175000	+	0	NA	intron (NM_001369695, intron 2 of 3)	intron (NM_001369695, intron 2 of 3)	4911	NM_001369695	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
71095	chr14	104876201	104877200	+	0	NA	intron (NM_001112726, intron 3 of 18)	intron (NM_001112726, intron 3 of 18)	11386	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
21368	chr1	205120501	205120700	+	0	NA	intron (NM_001193272, intron 1 of 13)	AluSz6|SINE|Alu	1378	NM_001193273	5929		NM_005057	ENSG00000117222	RBBP5	RBQ3|SWD1	RB binding protein 5, histone lysine methyltransferase complex subunit	protein-coding
99615	chr17	50553501	50553700	+	0	NA	intron (NM_022827, intron 14 of 16)	FLAM_C|SINE|Alu	6426	NM_022827	64847		NM_022827	ENSG00000006282	SPATA20	HEL-S-98|SSP411|Tisp78	spermatogenesis associated 20	protein-coding
93494	chr17	18965701	18966100	+	0	NA	intron (NM_152351, intron 5 of 14)	MIR|SINE|MIR	13735	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
154800	chr22	36862421	36862680	+	0	NA	intron (NM_013416, intron 1 of 8)	intron (NM_013416, intron 1 of 8)	1544	NM_000631	4689		NM_000631	ENSG00000100365	NCF4	CGD3|NCF|P40PHOX|SH3PXD4	neutrophil cytosolic factor 4	protein-coding
206360	chr7	30482151	30482250	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-3334	NR_149002	10392		NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1|hNod1	nucleotide binding oligomerization domain containing 1	protein-coding
121679	chr19	47507071	47507450	+	0	NA	intron (NR_038456, intron 1 of 11)	intron (NR_038456, intron 1 of 11)	7803	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
62848	chr13	110138051	110138550	+	0	NA	Intergenic	CpG	16598	NR_148221	105370361		NR_148221		LINC03032	-	long intergenic non-protein coding RNA 3032	ncRNA
99432	chr17	50115871	50116300	+	0	NA	exon (NM_001257359, exon 5 of 10)	exon (NM_001257359, exon 5 of 10)	14075	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
82564	chr16	18756721	18757350	+	0	NA	Intergenic	AluSx|SINE|Alu	33299	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
44882	chr11	114346671	114347200	+	0	NA	Intergenic	Intergenic	33104	NR_120567	101928940		NR_120567	ENSG00000256195	LOC101928940	-	uncharacterized LOC101928940	ncRNA
165150	chr3	72082551	72082650	+	0	NA	intron (NR_104116, intron 2 of 6)	intron (NR_104116, intron 2 of 6)	17855	NR_104116	285286		NR_104116	ENSG00000241163	LINC00877	-	long intergenic non-protein coding RNA 877	ncRNA
198841	chr6	109349001	109349530	+	0	NA	intron (NR_152435, intron 44 of 45)	intron (NR_152435, intron 44 of 45)	32474	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
226232	chr9	66262351	66262450	+	0	NA	Intergenic	Intergenic	-97494	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
131342	chr2	96155001	96155400	+	0	NA	Intergenic	Intergenic	-9760	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
115014	chr19	14073001	14074350	+	0	NA	TTS (NR_106715)	TTS (NR_106715)	314	NR_106715	102466515		NR_106715	ENSG00000284081	MIR1199	hsa-mir-1199	microRNA 1199	ncRNA
155094	chr22	37570401	37570600	+	0	NA	intron (NM_006498, intron 3 of 3)	intron (NM_006498, intron 3 of 3)	9587	NM_006498	3957		NM_006498	ENSG00000100079	LGALS2	HL14	galectin 2	protein-coding
193409	chr6	30443171	30443330	+	0	NA	Intergenic	Intergenic	-46259	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
64572	chr14	24679701	24680180	+	0	NA	Intergenic	L2a|LINE|L2	-45750	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
42592	chr11	72039901	72041400	+	0	NA	intron (NR_104476, intron 2 of 24)	intron (NR_104476, intron 2 of 24)	26359	NR_104178	100128494		NR_104178	ENSG00000251143	LOC100128494	-	uncharacterized LOC100128494	ncRNA
151265	chr21	45402371	45402730	+	0	NA	Intergenic	Intergenic	-2615	NM_001379500	80781		NM_030582	ENSG00000182871	COL18A1	GLCC|KNO|KNO1|KS	collagen type XVIII alpha 1 chain	protein-coding
62141	chr13	95707101	95707750	+	0	NA	intron (NM_006260, intron 1 of 11)	intron (NM_006260, intron 1 of 11)	30286	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
181035	chr5	35899771	35900230	+	0	NA	Intergenic	Intergenic	38622	NM_001042625	133690		NM_144647	ENSG00000152611	CAPSL	-	calcyphosine like	protein-coding
89485	chr16	89119171	89119580	+	0	NA	intron (NR_147928, intron 7 of 11)	CpG	-17173	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
25867	chr10	11247501	11248000	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	82720	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
17201	chr1	156250851	156252380	+	0	NA	intron (NM_001323616, intron 20 of 22)	intron (NM_001323616, intron 20 of 22)	-3498	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
41196	chr11	65644801	65645430	+	0	NA	exon (NM_006747, exon 5 of 16)	exon (NM_006747, exon 5 of 16)	-4077	NR_039709	100616284		NR_039709	ENSG00000265874	MIR4489	mir-4489	microRNA 4489	ncRNA
138927	chr2	218222521	218223580	+	0	NA	intron (NM_152862, intron 2 of 10)	Charlie17a|DNA|hAT-Charlie	5653	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
208929	chr7	74083251	74085400	+	0	NA	intron (NM_002314, intron 1 of 15)	CpG	521	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
209239	chr7	75777701	75778130	+	0	NA	intron (NM_001371936, intron 1 of 3)	AluSx|SINE|Alu	-5704	NM_001371938	10344		NM_006072	ENSG00000006606	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	C-C motif chemokine ligand 26	protein-coding
139237	chr2	219320751	219321100	+	0	NA	Intergenic	AluSx|SINE|Alu	-11524	NM_001199763	5798		NM_002846	ENSG00000054356	PTPRN	IA-2|IA-2/PTP|IA2|ICA512|R-PTP-N	protein tyrosine phosphatase receptor type N	protein-coding
188152	chr5	150419601	150420000	+	0	NA	Intergenic	HAL1|LINE|L1	-6864	NM_001025159	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
99254	chr17	49714501	49716600	+	0	NA	intron (NM_030802, intron 7 of 7)	Tigger19b|DNA|TcMar-Tigger	-7586	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
144801	chr20	36658221	36658830	+	0	NA	intron (NR_038370, intron 11 of 13)	intron (NR_038370, intron 11 of 13)	-12329	NM_032214	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
73876	chr15	50352871	50354400	+	0	NA	promoter-TSS (NR_024490)	promoter-TSS (NR_024490)	-539	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
43577	chr11	83070451	83073380	+	0	NA	promoter-TSS (NM_001286061)	promoter-TSS (NM_001286061)	-18	NM_014488	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
29436	chr10	70363971	70364830	+	0	NA	intron (NM_001278214, intron 1 of 3)	intron (NM_001278214, intron 1 of 3)	12379	NM_001278213	55222		NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
239301	chrY	15426401	15426600	+	0	NA	Intergenic	L1PA3|LINE|L1	-622467	NR_046504	100874056		NR_046504	ENSG00000228787	NLGN4Y-AS1	NLGN4Y-AS|NLGN4YAS	NLGN4Y antisense RNA 1	ncRNA
57904	chr12	123456401	123457080	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-1399	NR_104103	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
187589	chr5	142843721	142844180	+	0	NA	intron (NM_001349547, intron 1 of 21)	MIRb|SINE|MIR	24960	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
170324	chr3	184360771	184362300	+	0	NA	promoter-TSS (NM_001171089)	promoter-TSS (NM_001171089)	70	NM_001171089	1181		NM_004366	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|FHA2|FHII|HALD2|LKPAT|clC-2	chloride voltage-gated channel 2	protein-coding
144665	chr20	36199651	36200130	+	0	NA	intron (NM_001258330, intron 14 of 20)	intron (NM_001258330, intron 14 of 20)	-36527	NM_015511	25980		NM_015511	ENSG00000131043	AAR2	C20orf4|CGI-23	AAR2 splicing factor	protein-coding
163895	chr3	52518771	52519130	+	0	NA	intron (NM_015136, intron 48 of 68)	(GCCCC)n|Simple_repeat|Simple_repeat	14907	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
8474	chr1	40799771	40800830	+	0	NA	intron (NM_172163, intron 1 of 12)	MER115|DNA|hAT-Tip100	16513	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
128777	chr2	62218601	62218800	+	0	NA	intron (NM_001319075, intron 1 of 1)	MIR3|SINE|MIR	3179	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
239034	chrY	6964751	6965080	+	0	NA	intron (NM_134258, intron 2 of 17)	HERVK-int|LTR|ERVK	54218	NM_033284	90665		NM_033284	ENSG00000092377	TBL1Y	DFNY2|TBL1	transducin beta like 1 Y-linked	protein-coding
60499	chr13	41319501	41319700	+	0	NA	intron (NM_024561, intron 3 of 19)	AluSx|SINE|Alu	-7562	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
114788	chr19	13776371	13776830	+	0	NA	intron (NM_014047, intron 2 of 2)	L2a|LINE|L2	2144	NM_014047	28974		NM_014047	ENSG00000104979	C19orf53	HSPC023|L10K|LYDG10	chromosome 19 open reading frame 53	protein-coding
122021	chr19	48613921	48615200	+	0	NA	TTS (NM_000979)	TTS (NM_000979)	516	NM_017708	54854		NM_017708	ENSG00000105523	FAM83E	-	family with sequence similarity 83 member E	protein-coding
108022	chr18	58781601	58781950	+	0	NA	Intergenic	Intergenic	-32105	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
187660	chr5	143183701	143184100	+	0	NA	intron (NM_001349547, intron 20 of 21)	intron (NM_001349547, intron 20 of 21)	-8600	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
63887	chr14	21846271	21847400	+	0	NA	Intergenic	Intergenic	-175818	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
83305	chr16	24537071	24537930	+	0	NA	Intergenic	ORSL-2a|DNA|hAT-Tip100	-2066	NM_006910	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
66503	chr14	61705821	61706550	+	0	NA	intron (NM_001243084, intron 1 of 14)	intron (NM_001243084, intron 1 of 14)	8563	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
11442	chr1	89823601	89824250	+	0	NA	intron (NM_018103, intron 1 of 2)	intron (NM_018103, intron 1 of 2)	1986	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
92737	chr17	14308771	14309950	+	0	NA	intron (NM_006041, intron 1 of 1)	CpG	5620	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
42261	chr11	68206051	68207400	+	0	NA	intron (NR_161378, intron 1 of 9)	intron (NR_161378, intron 1 of 9)	6571	NM_001369426	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
81853	chr16	11618751	11620000	+	0	NA	Intergenic	Intergenic	-31909	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
215217	chr7	156040171	156040530	+	0	NA	Intergenic	Intergenic	77793	NR_168379	389602		NM_001291913	ENSG00000204876	LOC389602	-	uncharacterized LOC389602	ncRNA
227625	chr9	92804671	92805130	+	0	NA	TTS (NR_136301)	TTS (NR_136301)	3187	NR_136301	101929748		NR_136301	ENSG00000288062	LOC101929748	-	uncharacterized LOC101929748	ncRNA
14955	chr1	147762621	147763150	+	0	NA	intron (NM_005266, intron 1 of 1)	intron (NM_005266, intron 1 of 1)	-2283	NM_181703	2702		NM_005266	ENSG00000265107	GJA5	ATFB11|CX40	gap junction protein alpha 5	protein-coding
139010	chr2	218370571	218370930	+	0	NA	Intergenic	Intergenic	-2848	NR_110573	101928513		NR_110573	ENSG00000225062	CATIP-AS1	-	CATIP antisense RNA 1	ncRNA
200403	chr6	134452851	134453150	+	0	NA	intron (NR_038219, intron 2 of 4)	intron (NR_038219, intron 2 of 4)	14610	NR_038219	154092		NR_038216	ENSG00000236700	LINC01010	-	long intergenic non-protein coding RNA 1010	ncRNA
23987	chr1	235221771	235222130	+	0	NA	intron (NM_016374, intron 13 of 23)	AluJo|SINE|Alu	-31834	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
53679	chr12	68450921	68451980	+	0	NA	promoter-TSS (NR_120458)	promoter-TSS (NR_120458)	34	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
133720	chr2	127377451	127377750	+	0	NA	intron (NM_001371911, intron 1 of 16)	intron (NM_001371911, intron 1 of 16)	10375	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
69528	chr14	96391151	96392530	+	0	NA	promoter-TSS (NM_001350892)	promoter-TSS (NM_001350892)	-288	NM_152327	122481		NM_152327	ENSG00000140057	AK7	AK 7|CFAP75|FAP75|SPGF27	adenylate kinase 7	protein-coding
86798	chr16	67827351	67827930	+	0	NA	TTS (NM_025082)	TTS (NM_025082)	-14680	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
108944	chr18	79494171	79494780	+	0	NA	intron (NM_172387, intron 9 of 9)	CpG	-84807	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
83456	chr16	27337101	27337330	+	0	NA	intron (NM_000418, intron 2 of 10)	intron (NM_000418, intron 2 of 10)	23241	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
231943	chr9	133128821	133129850	+	0	NA	promoter-TSS (NM_001271775)	promoter-TSS (NM_001271775)	66	NM_001271775	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
97965	chr17	45242871	45243450	+	0	NA	exon (NM_005892, exon 17 of 27)	exon (NM_005892, exon 17 of 27)	-4765	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
168457	chr3	143000921	143002680	+	0	NA	promoter-TSS (NR_034032)	promoter-TSS (NR_034032)	230	NM_001320222	23350		NM_001080415	ENSG00000163714	U2SURP	SR140|fSAPa	U2 snRNP associated SURP domain containing	protein-coding
216707	chr8	22242121	22242580	+	0	NA	Intergenic	Intergenic	2687	NR_029714	407037		NR_029714	ENSG00000208037	MIR320A	MIRN320|MIRN320A|hsa-mir-320a|mir-320a	microRNA 320a	ncRNA
22771	chr1	224410651	224411150	+	0	NA	intron (NM_001115113, intron 7 of 13)	AluJb|SINE|Alu	-12589	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
19010	chr1	169603171	169603750	+	0	NA	intron (NM_003005, intron 9 of 16)	intron (NM_003005, intron 9 of 16)	-16979	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
71473	chr14	105928571	105928930	+	0	NA	non-coding (NR_026800, exon 6 of 6).2	non-coding (NR_026800, exon 6 of 6).2	10771	NR_026800	9834		NM_014151	ENSG00000226777	FAM30A	C14orf110|HSPC053|KIAA0125	family with sequence similarity 30 member A	ncRNA
238242	chrX	143319551	143319650	+	0	NA	Intergenic	L1PBa1|LINE|L1	197875	NM_001009609	139067		NM_001009609	ENSG00000189252	SPANXN3	CT11.8|SPANX-N3	SPANX family member N3	protein-coding
157789	chr22	46770301	46770930	+	0	NA	intron (NR_104292, intron 2 of 13)	intron (NR_104292, intron 2 of 13)	-3312	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
58561	chr12	132397301	132397700	+	0	NA	Intergenic	Intergenic	67650	NR_120467	101928416		NR_120467	ENSG00000255916	LOC101928416	-	uncharacterized LOC101928416	ncRNA
116135	chr19	17339071	17339880	+	0	NA	exon (NM_032620, exon 7 of 9)	exon (NM_032620, exon 7 of 9)	1922	NM_001128855	84705		NM_032620	ENSG00000130299	GTPBP3	COXPD23|GTPBG3|MSS1|MTGP1|THDF1	GTP binding protein 3, mitochondrial	protein-coding
38536	chr11	45903301	45904100	+	0	NA	intron (NM_005456, intron 6 of 11)	intron (NM_005456, intron 6 of 11)	3571	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
112642	chr19	6805271	6805430	+	0	NA	intron (NM_005428, intron 1 of 26)	AluSx|SINE|Alu	32642	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
54040	chr12	75754721	75755250	+	0	NA	Intergenic	Intergenic	-243376	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
49943	chr12	40011101	40011800	+	0	NA	intron (NM_052885, intron 3 of 9)	intron (NM_052885, intron 3 of 9)	94631	NM_052885	114134		NM_052885	ENSG00000151229	SLC2A13	HMIT	solute carrier family 2 member 13	protein-coding
84513	chr16	30510651	30510750	+	0	NA	intron (NM_002209, intron 22 of 30)	MIRb|SINE|MIR	6781	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
71325	chr14	105404371	105404930	+	0	NA	intron (NM_001195082, intron 2 of 3)	L1MEd|LINE|L1	6112	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
97990	chr17	45278601	45279280	+	0	NA	intron (NM_003954, intron 6 of 15)	AluJb|SINE|Alu	-16846	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
4687	chr1	22964121	22964530	+	0	NA	intron (NM_001289974, intron 3 of 7)	MLT1H2|LTR|ERVL-MaLR	8541	NM_001289974	646262		NM_001289974	ENSG00000215906	LACTBL1	-	lactamase beta like 1	protein-coding
10055	chr1	58701121	58701500	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1248	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
105531	chr17	83124121	83125500	+	0	NA	Intergenic	Intergenic	43664	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
215030	chr7	152424651	152424950	+	0	NA	intron (NM_170606, intron 1 of 58)	intron (NM_170606, intron 1 of 58)	11203	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
65967	chr14	56195201	56195400	+	0	NA	intron (NM_021255, intron 2 of 5)	intron (NM_021255, intron 2 of 5)	76889	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
225350	chr9	34653321	34653980	+	0	NA	promoter-TSS (NR_052010)	promoter-TSS (NR_052010)	-247	NR_052010	3590		NM_004512	ENSG00000137070	IL11RA	CRSDA	interleukin 11 receptor subunit alpha	protein-coding
117697	chr19	28502051	28502250	+	0	NA	intron (NR_110759, intron 5 of 9)	intron (NR_110759, intron 5 of 9)	-104538	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
157617	chr22	46052971	46054900	+	0	NA	promoter-TSS (NR_027034)	promoter-TSS (NR_027034)	89	NR_027034	150381		NR_027034		PRR34-AS1	-	PRR34 antisense RNA 1	ncRNA
18784	chr1	167538771	167539130	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	14812	NM_003851	8804		NM_003851	ENSG00000143162	CREG1	CREG	cellular repressor of E1A stimulated genes 1	protein-coding
7064	chr1	32003271	32004180	+	0	NA	Intergenic	Intergenic	-10143	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
187948	chr5	149271471	149272330	+	0	NA	promoter-TSS (NM_152406)	promoter-TSS (NM_152406)	41	NM_001146337	134265		NM_152406	ENSG00000157510	AFAP1L1	-	actin filament associated protein 1 like 1	protein-coding
85140	chr16	37967651	37967830	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2221188	NR_033985	400533		NR_033985	ENSG00000261122	LINC02167	-	long intergenic non-protein coding RNA 2167	ncRNA
105816	chr18	2961671	2962280	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	-15352	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
159419	chr3	13549621	13550930	+	0	NA	intron (NM_001004019, intron 1 of 17)	intron (NM_001004019, intron 1 of 17)	1150	NM_001004019	2199		NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
119499	chr19	40471621	40471900	+	0	NA	intron (NM_020971, intron 1 of 35)	AluJb|SINE|Alu	4759	NM_020971	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
208194	chr7	65004751	65005130	+	0	NA	non-coding (NR_145414, exon 2 of 2)	non-coding (NR_145414, exon 2 of 2)	1747	NR_145415	2086		NM_001007253	ENSG00000213462	ERV3-1	ERV-R|ERV3|ERVR|HERV-R|HERVR|envR	endogenous retrovirus group 3 member 1, envelope	protein-coding
22948	chr1	225993621	225994080	+	0	NA	intron (NM_152608, intron 2 of 6)	AluJo|SINE|Alu	5493	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
115387	chr19	15257871	15258230	+	0	NA	intron (NM_001379291, intron 7 of 19)	intron (NM_001379291, intron 7 of 19)	22401	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
6658	chr1	29113401	29113600	+	0	NA	intron (NM_001376013, intron 19 of 20)	intron (NM_001376013, intron 19 of 20)	9001	NM_001171868	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
229728	chr9	124872501	124872980	+	0	NA	intron (NM_030978, intron 3 of 5)	intron (NM_030978, intron 3 of 5)	10610	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
131193	chr2	95027451	95027900	+	0	NA	intron (NM_022440, intron 1 of 1)	intron (NM_022440, intron 1 of 1)	1967	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
191450	chr6	10722651	10723650	+	0	NA	promoter-TSS (NM_016462).2	promoter-TSS (NM_016462).2	80	NM_016462	51522		NM_016462	ENSG00000111843	TMEM14C	C6orf53|HSPC194|MSTP073|NET26|bA421M1.6	transmembrane protein 14C	protein-coding
14437	chr1	144388501	144389280	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-15231	NM_001144032	730262		NM_001144032	ENSG00000271567	PPIAL4E	COAS2|PPIAL4F	peptidylprolyl isomerase A like 4E	protein-coding
50940	chr12	49368371	49368530	+	0	NA	intron (NM_001293286, intron 1 of 12)	intron (NM_001293286, intron 1 of 12)	988	NM_001293286	65244		NM_023071	ENSG00000123352	SPATS2	Nbla00526|P59SCR|SCR59|SPATA10	spermatogenesis associated serine rich 2	protein-coding
123970	chr19	55412701	55413100	+	0	NA	Intergenic	AluSx3|SINE|Alu	-5112	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
175256	chr4	65670401	65670600	+	0	NA	promoter-TSS (NM_182472)	promoter-TSS (NM_182472)	-5	NM_001281766	2044		NM_004439	ENSG00000145242	EPHA5	CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4	EPH receptor A5	protein-coding
30113	chr10	74000751	74001480	+	0	NA	intron (NM_014000, intron 1 of 21)	intron (NM_014000, intron 1 of 21)	2999	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
41358	chr11	65968271	65968430	+	0	NA	intron (NM_005146, intron 12 of 19)	L2a|LINE|L2	6616	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
230590	chr9	128567401	128568000	+	0	NA	intron (NM_001375310, intron 2 of 57)	intron (NM_001375310, intron 2 of 57)	15113	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
58292	chr12	130762801	130763180	+	0	NA	Intergenic	MER21A|LTR|ERVL	-46685	NM_001351233	23504		NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
232416	chr9	136084701	136084900	+	0	NA	intron (NM_144653, intron 1 of 5)	L1MB3|LINE|L1	10489	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
223018	chr8	143292701	143292900	+	0	NA	intron (NM_030895, intron 1 of 2)	intron (NM_030895, intron 1 of 2)	1383	NM_030895	79943		NM_030895	ENSG00000185730	ZNF696	-	zinc finger protein 696	protein-coding
169516	chr3	170033301	170034330	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-4180	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
134641	chr2	144435471	144435830	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-83964	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
62762	chr13	108214521	108215800	+	0	NA	promoter-TSS (NM_002312)	promoter-TSS (NM_002312)	145	NM_001352603	3981		NM_002312	ENSG00000174405	LIG4	LIG4S	DNA ligase 4	protein-coding
209987	chr7	92836301	92837880	+	0	NA	promoter-TSS (NM_001145306)	promoter-TSS (NM_001145306)	-517	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
45443	chr11	118439671	118440180	+	0	NA	intron (NM_001197104, intron 1 of 35)	intron (NM_001197104, intron 1 of 35)	3433	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
139989	chr2	230927471	230928100	+	0	NA	Intergenic	Intergenic	-2543	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
178188	chr4	142397521	142398130	+	0	NA	intron (NM_001385379, intron 2 of 21)	AluSc8|SINE|Alu	5308	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
169831	chr3	177148851	177149150	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluSp|SINE|Alu	47478	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
226284	chr9	68319301	68319600	+	0	NA	Intergenic	SATR1|Satellite|Satellite	16583	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
89218	chr16	88623171	88623330	+	0	NA	exon (NM_001294340, exon 11 of 19)	exon (NM_001294340, exon 11 of 19)	-15322	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
65836	chr14	54898951	54899650	+	0	NA	intron (NM_001024024, intron 1 of 6)	AluJb|SINE|Alu	3524	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
175103	chr4	54232821	54233630	+	0	NA	promoter-TSS (NM_001347830)	promoter-TSS (NM_001347830)	125	NM_001347829	5156		NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
83890	chr16	28971401	28971600	+	0	NA	Intergenic	MER41C|LTR|ERV1	-3278	NM_001142449	83985		NM_032038	ENSG00000169682	SPNS1	HSpin1|LAT|PP2030|SLC62A1|SLC63A1|SPIN1|SPINL|nrs	SPNS lysolipid transporter 1, lysophospholipid	protein-coding
115155	chr19	14407501	14409100	+	0	NA	TTS (NM_005804)	TTS (NM_005804)	11041	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
14729	chr1	145982101	145982500	+	0	NA	Intergenic	Intergenic	13444	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
196101	chr6	42359071	42359230	+	0	NA	intron (NM_033502, intron 3 of 17)	intron (NM_033502, intron 3 of 17)	92901	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
84774	chr16	30994571	30995350	+	0	NA	intron (NM_052874, intron 7 of 9)	AluJo|SINE|Alu	9753	NM_001142778	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
6095	chr1	27296451	27297650	+	0	NA	exon (NM_001276252, exon 11 of 16)	exon (NM_001276252, exon 11 of 16)	-25095	NM_032125	84065		NM_032125	ENSG00000186501	TMEM222	C1orf160|NEDMOSBA	transmembrane protein 222	protein-coding
103622	chr17	78738271	78738830	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-1648	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
150753	chr21	43777851	43777950	+	0	NA	Intergenic	AluJo|SINE|Alu	-1592	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
64223	chr14	23070601	23070800	+	0	NA	intron (NM_014977, intron 8 of 18)	intron (NM_014977, intron 8 of 18)	869	NM_001164817	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
84615	chr16	30695921	30696180	+	0	NA	Intergenic	AluSx1|SINE|Alu	2421	NM_001256932	730183		NM_001256932	ENSG00000261840	LOC730183	-	uncharacterized LOC730183	ncRNA
223273	chr8	143722271	143722730	+	0	NA	TTS (NM_139021)	TTS (NM_139021)	6151	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
74027	chr15	52218371	52218530	+	0	NA	intron (NM_018728, intron 32 of 40)	intron (NM_018728, intron 32 of 40)	-27058	NM_016194	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
171118	chr3	195530651	195531150	+	0	NA	intron (NM_006241, intron 1 of 5)	AluSq2|SINE|Alu	12425	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
83865	chr16	28910671	28911230	+	0	NA	exon (NM_024816, exon 7 of 13)	exon (NM_024816, exon 7 of 13)	14288	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
206262	chr7	29329401	29329600	+	0	NA	intron (NM_001293070, intron 2 of 13)	intron (NM_001293070, intron 2 of 13)	-120530	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
216050	chr8	9830901	9831430	+	0	NA	Intergenic	Intergenic	72164	NR_024281	157627		NR_024281	ENSG00000253230	MIR124-1HG	LINC00599|Rncr3|neuroLNC	MIR124-1 host gene	ncRNA
150904	chr21	44160921	44161250	+	0	NA	Intergenic	Intergenic	-1223	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
106551	chr18	21611801	21613080	+	0	NA	exon (NM_006938, exon 1 of 4)	exon (NM_006938, exon 1 of 4)	126	NM_006938	6632		NM_006938	ENSG00000167088	SNRPD1	HsT2456|SMD1|SNRPD|Sm-D1	small nuclear ribonucleoprotein D1 polypeptide	protein-coding
40438	chr11	64200451	64200750	+	0	NA	intron (NM_001282653, intron 10 of 13)	(GT)n|Simple_repeat|Simple_repeat	-5320	NM_001382448	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
143811	chr20	32471221	32471480	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	12140	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
131240	chr2	95778801	95779000	+	0	NA	Intergenic	L1PA6|LINE|L1	48081	NR_103734	150759		NM_175853		LINC00342	NCRNA00342	long intergenic non-protein coding RNA 342	ncRNA
173454	chr4	8408721	8410900	+	0	NA	intron (NM_001375787, intron 6 of 17)	intron (NM_001375787, intron 6 of 17)	18638	NM_001375787	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
226330	chr9	69173851	69174580	+	0	NA	promoter-TSS (NM_001369872)	promoter-TSS (NM_001369872)	-62	NM_001369872	9414		NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|FHCA1|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
194419	chr6	33077801	33078430	+	0	NA	intron (NM_002121, intron 1 of 5).5	intron (NM_002121, intron 1 of 5).5	2125	NM_002121	3115		NM_002121	ENSG00000223865	HLA-DPB1	DPB1|HLA-DP|HLA-DP1B|HLA-DPB	major histocompatibility complex, class II, DP beta 1	protein-coding
197466	chr6	75275021	75275280	+	0	NA	intron (NM_018247, intron 1 of 6)	L2a|LINE|L2	9642	NM_018247	55754		NM_018247	ENSG00000112697	TMEM30A	C6orf67|CDC50A	transmembrane protein 30A	protein-coding
143536	chr20	31574651	31574950	+	0	NA	Intergenic	AluY|SINE|Alu	-1537	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
239082	chrY	8139851	8139950	+	0	NA	Intergenic	L1PA2|LINE|L1	334976	NR_001551	83867		NM_031930	ENSG00000237048	TTTY12	NCRNA00135|TTY11|TTY12	testis expressed transcript, Y-linked 12	ncRNA
190742	chr6	396721	396980	+	0	NA	intron (NR_046000, intron 4 of 9)	intron (NR_046000, intron 4 of 9)	5098	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
51682	chr12	53094201	53095280	+	0	NA	Intergenic	AluJb|SINE|Alu	-2927	NM_002178	3489		NM_002178	ENSG00000167779	IGFBP6	IBP6	insulin like growth factor binding protein 6	protein-coding
150654	chr21	43417951	43419600	+	0	NA	intron (NM_173354, intron 11 of 13)	intron (NM_173354, intron 11 of 13)	8356	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
3029	chr1	12131971	12132130	+	0	NA	intron (NM_001281430, intron 11 of 13)	AluSg|SINE|Alu	-34893	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
34852	chr11	325001	325480	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-4380	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
229269	chr9	120055471	120055780	+	0	NA	Intergenic	L1PA2|LINE|L1	120565	NR_132393	106146149		NR_132393	ENSG00000261432	LINC01613	n341773	long intergenic non-protein coding RNA 1613	ncRNA
6405	chr1	27963501	27963700	+	0	NA	exon (NM_018053, exon 2 of 3)	exon (NM_018053, exon 2 of 3)	3627	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
39230	chr11	57651051	57651150	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-1156	NM_001363487	219539		NM_145008	ENSG00000166793	YPEL4	-	yippee like 4	protein-coding
153810	chr22	29716571	29717150	+	0	NA	Intergenic	Intergenic	-3143	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
126087	chr2	25824201	25824400	+	0	NA	intron (NM_018263, intron 2 of 11)	intron (NM_018263, intron 2 of 11)	6601	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
113890	chr19	10677221	10678330	+	0	NA	intron (NM_153464, intron 5 of 17)	intron (NM_153464, intron 5 of 17)	23429	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
136964	chr2	190411671	190412000	+	0	NA	intron (NM_001375986, intron 1 of 7)	intron (NM_001375986, intron 1 of 7)	2977	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
217326	chr8	27462551	27462850	+	0	NA	intron (NM_001347705, intron 6 of 6)	intron (NM_001347705, intron 6 of 6)	16561	NM_000742	1135		NM_000742	ENSG00000120903	CHRNA2	-	cholinergic receptor nicotinic alpha 2 subunit	protein-coding
69467	chr14	95154421	95154700	+	0	NA	intron (NM_030621, intron 1 of 28)	L1MB3|LINE|L1	2969	NM_177438	23405		NM_030621	ENSG00000100697	DICER1	DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2|aviD	dicer 1, ribonuclease III	protein-coding
70927	chr14	104387871	104388230	+	0	NA	Intergenic	Intergenic	164466	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
25307	chr10	6209751	6210050	+	0	NA	intron (NM_001314063, intron 1 of 15)	AluYc|SINE|Alu	6968	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
38404	chr11	44947951	44948380	+	0	NA	intron (NM_001258323, intron 1 of 7)	MIRc|SINE|MIR	1995	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
176236	chr4	86554771	86554930	+	0	NA	Intergenic	L2c|LINE|L2	-12298	NR_039657	100616463		NR_039657	ENSG00000266515	MIR4452	-	microRNA 4452	ncRNA
183438	chr5	78887601	78887800	+	0	NA	intron (NM_000046, intron 4 of 7)	intron (NM_000046, intron 4 of 7)	97610	NM_000046	411		NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
208574	chr7	72835851	72836150	+	0	NA	intron (NR_024111, intron 3 of 3)	AluYc|SINE|Alu	6627	NR_024110	155370		NR_001588	ENSG00000291152	SBDSP1	SBDSP	SBDS pseudogene 1	pseudo
228485	chr9	100028001	100028450	+	0	NA	intron (NM_015051, intron 4 of 11)	intron (NM_015051, intron 4 of 11)	70775	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
74199	chr15	55917871	55918130	+	0	NA	promoter-TSS (NM_198400)	promoter-TSS (NM_198400)	-864	NM_001284338	4734		NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	NEDD4 E3 ubiquitin protein ligase	protein-coding
24561	chr1	244904871	244905030	+	0	NA	Intergenic	AluY|SINE|Alu	-40407	NM_031844	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
221688	chr8	126555921	126557400	+	0	NA	non-coding (NR_156466, exon 2 of 3)	non-coding (NR_156466, exon 2 of 3)	1818	NM_174911	157638		NM_174911	ENSG00000168672	LRATD2	BCMP101|FAM84B|NSE2	LRAT domain containing 2	protein-coding
29504	chr10	70602441	70604530	+	0	NA	promoter-TSS (NM_001083116)	promoter-TSS (NM_001083116)	-697	NM_005041	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
224008	chr9	2570651	2571000	+	0	NA	intron (NR_015375, intron 1 of 3)	intron (NR_015375, intron 1 of 3)	-50962	NM_003383	7436		NM_003383	ENSG00000147852	VLDLR	CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH	very low density lipoprotein receptor	protein-coding
126314	chr2	27304901	27305300	+	0	NA	intron (NM_187841, intron 4 of 8)	intron (NM_187841, intron 4 of 8)	3345	NM_003353	7349		NM_003353	ENSG00000163794	UCN	UCN1|UI|UROC	urocortin	protein-coding
131573	chr2	96820001	96820300	+	0	NA	intron (NM_199078, intron 1 of 6)	intron (NM_199078, intron 1 of 6)	3882	NM_017623	26505		NM_017623	ENSG00000168763	CNNM3	ACDP3	cyclin and CBS domain divalent metal cation transport mediator 3	protein-coding
166130	chr3	111326251	111326700	+	0	NA	Intergenic	L1MB7|LINE|L1	-215722	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
195315	chr6	36599671	36600190	+	0	NA	non-coding (NR_036610, exon 4 of 7)	non-coding (NR_036610, exon 4 of 7)	5568	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
57121	chr12	121145201	121145700	+	0	NA	intron (NR_033953, intron 1 of 10)	L2c|LINE|L2	12574	NR_033950	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
225252	chr9	34327801	34328000	+	0	NA	intron (NM_194313, intron 1 of 12)	intron (NM_194313, intron 1 of 12)	1368	NM_194313	347240		NM_194313	ENSG00000186638	KIF24	C9orf48|bA571F15.4	kinesin family member 24	protein-coding
197498	chr6	75614721	75615400	+	0	NA	intron (NM_015571, intron 1 of 23)	AluSz|SINE|Alu	13180	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
130676	chr2	86440221	86441700	+	0	NA	promoter-TSS (NM_018433)	promoter-TSS (NM_018433)	-411	NM_018433	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
201020	chr6	141482571	141483080	+	0	NA	Intergenic	Intergenic	-650334	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
111521	chr19	4011051	4011150	+	0	NA	intron (NM_015897, intron 1 of 10)	intron (NM_015897, intron 1 of 10)	3364	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
28040	chr10	43251221	43251850	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	15530	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
94296	chr17	28727801	28730830	+	0	NA	intron (NM_178170, intron 1 of 14)	L2a|LINE|L2	527	NM_178170	284086		NM_178170	ENSG00000160602	NEK8	JCK|NEK12A|NPHP9|RHPD2	NIMA related kinase 8	protein-coding
85985	chr16	57432901	57433300	+	0	NA	intron (NM_001308358, intron 5 of 7)	intron (NM_001308358, intron 5 of 7)	14285	NM_020313	57019		NM_020313	ENSG00000005194	CIAPIN1	Anamorsin|CIAE2|DRE2|PRO0915	cytokine induced apoptosis inhibitor 1	protein-coding
139548	chr2	224894321	224895100	+	0	NA	intron (NM_001363762, intron 4 of 55)	intron (NM_001363762, intron 4 of 55)	52339	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
31388	chr10	94542921	94543180	+	0	NA	Intergenic	AluY|SINE|Alu	-2717	NM_001289067	3070		NM_018063	ENSG00000119969	HELLS	ICF4|LSH|Nbla10143|PASG|SALNR|SMARCA6	helicase, lymphoid specific	protein-coding
230170	chr9	127777651	127778100	+	0	NA	intron (NM_170600, intron 1 of 11)	intron (NM_170600, intron 1 of 11)	791	NM_170600	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
125561	chr2	15942421	15942950	+	0	NA	promoter-TSS (NR_110230)	promoter-TSS (NR_110230)	-252	NR_161163	10408		NR_110230	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	ncRNA
67452	chr14	70811021	70811850	+	0	NA	Intergenic	Intergenic	-1922	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
70674	chr14	103085321	103085680	+	0	NA	intron (NM_001330236, intron 1 of 3)	intron (NM_001330236, intron 1 of 3)	1290	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
31512	chr10	96718051	96718150	+	0	NA	intron (NM_152309, intron 1 of 16)	L1MB8|LINE|L1	2414	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
92429	chr17	8437771	8437930	+	0	NA	intron (NM_001025579, intron 1 of 9)	intron (NM_001025579, intron 1 of 9)	1966	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
221415	chr8	123540671	123542380	+	0	NA	promoter-TSS (NM_058229)	promoter-TSS (NM_058229)	-319	NM_001242463	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
67234	chr14	68961421	68961680	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	17752	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
104145	chr17	80385971	80386130	+	0	NA	intron (NM_001256071, intron 61 of 67)	intron (NM_001256071, intron 61 of 67)	-29117	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
228618	chr9	105557771	105558480	+	0	NA	promoter-TSS (NM_001351502)	promoter-TSS (NM_001351502)	-5	NM_006731	2218		NM_006731	ENSG00000106692	FKTN	CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4	fukutin	protein-coding
32116	chr10	101221421	101222330	+	0	NA	Intergenic	Intergenic	7085	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
70715	chr14	103337821	103338800	+	0	NA	TTS (NR_002964)	TTS (NR_002964)	461	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
50185	chr12	46125071	46125500	+	0	NA	Intergenic	Intergenic	-134711	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
199800	chr6	127266151	127268280	+	0	NA	intron (NM_001242852, intron 1 of 4)	CpG	351	NM_001242850	81847		NM_030963	ENSG00000118518	RNF146	-	ring finger protein 146	protein-coding
46844	chr11	133738821	133739100	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	71416	NR_120444	646522		NR_120444	ENSG00000255258	LINC02743	-	long intergenic non-protein coding RNA 2743	ncRNA
57828	chr12	123235151	123235900	+	0	NA	intron (NM_001194995, intron 1 of 2)	AluY|SINE|Alu	1781	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
95932	chr17	38926501	38927050	+	0	NA	non-coding (NR_038847, exon 2 of 2)	non-coding (NR_038847, exon 2 of 2)	1607	NR_038847	100505576		NM_001414697	ENSG00000263874	LASP1NB	LINC00672	LASP1 neighbor	protein-coding
78348	chr15	91247651	91247900	+	0	NA	intron (NM_001323033, intron 2 of 10)	LTR50|LTR|ERVL	145979	NM_001323039	9899		NM_014848	ENSG00000185518	SV2B	HsT19680|SLC22B2	synaptic vesicle glycoprotein 2B	protein-coding
181656	chr5	50414301	50414700	+	0	NA	intron (NM_198449, intron 2 of 8)	AluJo|SINE|Alu	26788	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
183867	chr5	87267421	87268730	+	0	NA	promoter-TSS (NM_022650)	promoter-TSS (NM_022650)	192	NM_002890	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
36826	chr11	9839201	9839800	+	0	NA	exon (NM_030962, exon 26 of 40)	exon (NM_030962, exon 26 of 40)	358	NR_120539	101928008		NR_120539	ENSG00000255476	LOC101928008	-	uncharacterized LOC101928008	ncRNA
107843	chr18	54267301	54267980	+	0	NA	Intergenic	Intergenic	-1839	NR_147257	11201		NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
24292	chr1	236532651	236532750	+	0	NA	intron (NM_201544, intron 2 of 9)	AluSq2|SINE|Alu	-8192	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
77813	chr15	88614471	88614830	+	0	NA	Intergenic	Intergenic	-2726	NR_039867	100616238		NR_039867	ENSG00000283484	MIR3529	mir-3529	microRNA 3529	ncRNA
79750	chr16	1347901	1348730	+	0	NA	TTS (NM_001001410)	TTS (NM_001001410)	3563	NM_001001410	115939		NM_001001410	ENSG00000007520	TSR3	C16orf42|HsTsr3	TSR3 ribosome maturation factor	protein-coding
2085	chr1	7951051	7951350	+	0	NA	Intergenic	AluSg7|SINE|Alu	-10361	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
180553	chr5	14667851	14667950	+	0	NA	intron (NM_138348, intron 1 of 6)	intron (NM_138348, intron 1 of 6)	3182	NM_138348	90268		NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM|IMD107	OTU deubiquitinase with linear linkage specificity	protein-coding
204995	chr7	6441071	6441530	+	0	NA	intron (NM_139179, intron 2 of 14)	AluY|SINE|Alu	6654	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
223540	chr8	144142401	144143230	+	0	NA	Intergenic	Intergenic	5041	NM_016458	51236		NM_016458	ENSG00000235173	HGH1	BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B	HGH1 homolog	protein-coding
238340	chrX	149545171	149545780	+	0	NA	5' UTR (NM_001324280, exon 3 of 5)	5' UTR (NM_001324280, exon 3 of 5)	955	NM_001171909	91966		NM_178124	ENSG00000197620	EOLA1	CXorf40|CXorf40A	endothelium and lymphocyte associated ASCH domain 1	protein-coding
181906	chr5	54646101	54647650	+	0	NA	Intergenic	Intergenic	56449	NR_104659	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
214779	chr7	151112851	151113350	+	0	NA	intron (NM_001350103, intron 1 of 18)	intron (NM_001350103, intron 1 of 18)	-1538	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
148555	chr20	64236101	64236930	+	0	NA	intron (NM_004535, intron 19 of 22)	intron (NM_004535, intron 19 of 22)	-19180	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
238875	chrX	154537671	154537830	+	0	NA	intron (NM_000402, intron 2 of 12)	L1ME2|LINE|L1	-3488	NM_001377312	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
146346	chr20	49244521	49245750	+	0	NA	TTS (NM_021035)	TTS (NM_021035)	25719	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
78702	chr15	97960201	97961550	+	0	NA	exon (NM_183376, exon 1 of 8)	exon (NM_183376, exon 1 of 8)	172	NM_183376	91947		NM_183376	ENSG00000140450	ARRDC4	-	arrestin domain containing 4	protein-coding
66605	chr14	63643601	63643800	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1829	NM_001382426	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
151427	chr21	46126801	46127600	+	0	NA	intron (NM_001849, intron 27 of 27)	intron (NM_001849, intron 27 of 27)	-24175	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
25936	chr10	11340021	11340280	+	0	NA	intron (NR_126062, intron 1 of 2)	intron (NR_126062, intron 1 of 2)	4524	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
64706	chr14	34052051	34052350	+	0	NA	Intergenic	Intergenic	-101126	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
103400	chr17	78173321	78174530	+	0	NA	TTS (NM_001363778)	TTS (NM_001363778)	5344	NM_004710	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
226798	chr9	77020051	77020730	+	0	NA	exon (NM_001013735, exon 1 of 1)	exon (NM_001013735, exon 1 of 1)	735	NM_001013735	442425		NM_001013735	ENSG00000204612	FOXB2	FKH4|bA159H20.4	forkhead box B2	protein-coding
52997	chr12	57508301	57508750	+	0	NA	intron (NM_004990, intron 11 of 20)	SVA_D|Retroposon|SVA	-4163	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
153204	chr22	23859271	23859430	+	0	NA	intron (NM_001024939, intron 1 of 11)	intron (NM_001024939, intron 1 of 11)	1475	NM_001024939	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
5241	chr1	25009771	25010130	+	0	NA	Intergenic	Intergenic	-13553	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
107221	chr18	36284651	36284950	+	0	NA	Intergenic	MIR|SINE|MIR	-12913	NM_001281740	80206		NM_025135	ENSG00000134775	FHOD3	CMH28|FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
28611	chr10	58264821	58265080	+	0	NA	intron (NM_152230, intron 1 of 5)	intron (NM_152230, intron 1 of 5)	2944	NM_152230	253430		NM_152230	ENSG00000151151	IPMK	-	inositol polyphosphate multikinase	protein-coding
79270	chr16	522621	522880	+	0	NA	3' UTR (NM_014700, exon 14 of 14)	3' UTR (NM_014700, exon 14 of 14)	4657	NR_024121	64493		NR_024121		LINC00235	C16orf10|LA16c-356B8.1|NCRNA00235	long intergenic non-protein coding RNA 235	ncRNA
210771	chr7	100697801	100698000	+	0	NA	Intergenic	Intergenic	-3650	NM_001375763	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
116429	chr19	18017371	18017730	+	0	NA	Intergenic	Intergenic	9380	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
230723	chr9	128816101	128816580	+	0	NA	Intergenic	AluSp|SINE|Alu	-2160	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
183361	chr5	77144501	77144830	+	0	NA	intron (NR_024398, intron 3 of 3)	intron (NR_024398, intron 3 of 3)	-35639	NM_001349752	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
205756	chr7	23513371	23514030	+	0	NA	intron (NM_013293, intron 3 of 7)	LTR10C|LTR|ERV1	18281	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
6769	chr1	30747571	30747730	+	0	NA	intron (NM_006762, intron 1 of 7)	intron (NM_006762, intron 1 of 7)	-8418	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
229137	chr9	114478771	114479130	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	24265	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
132645	chr2	108725671	108725830	+	0	NA	intron (NM_006267, intron 1 of 28)	intron (NM_006267, intron 1 of 28)	6268	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
129705	chr2	70767801	70769100	+	0	NA	promoter-TSS (NM_001185054)	promoter-TSS (NM_001185054)	-250	NM_017488	119		NM_001617	ENSG00000075340	ADD2	ADDB	adducin 2	protein-coding
8703	chr1	42235051	42235150	+	0	NA	intron (NM_001198850, intron 4 of 12)	L1PA4|LINE|L1	-70355	NM_033553	2980		NM_033553	ENSG00000197273	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A	protein-coding
179865	chr5	553601	554500	+	0	NA	Intergenic	Intergenic	-18168	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
59481	chr13	26372671	26373080	+	0	NA	intron (NM_001346501, intron 4 of 11)	L2a|LINE|L2	118746	NM_001318368	1024		NM_001260	ENSG00000132964	CDK8	IDDHBA|K35	cyclin dependent kinase 8	protein-coding
148632	chr21	5754771	5755930	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	186146	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
136132	chr2	173965201	173966400	+	0	NA	promoter-TSS (NM_003111)	promoter-TSS (NM_003111)	-98	NM_001172712	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
147424	chr20	58895001	58896130	+	0	NA	intron (NR_132272, intron 1 of 3)	intron (NR_132272, intron 1 of 3)	3402	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
218245	chr8	42145321	42145780	+	0	NA	Intergenic	L2a|LINE|L2	-7396	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
127608	chr2	42976401	42976600	+	0	NA	Intergenic	Intergenic	63043	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
61908	chr13	77479251	77479430	+	0	NA	Intergenic	AluJo|SINE|Alu	-56334	NM_001160706	8796		NM_003843	ENSG00000136155	SCEL	-	sciellin	protein-coding
47370	chr12	2403601	2403800	+	0	NA	intron (NM_199460, intron 3 of 49)	intron (NM_199460, intron 3 of 49)	133924	NR_046769	100874370		NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
45819	chr11	119356321	119357600	+	0	NA	intron (NM_171997, intron 11 of 11)	CpG	7248	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
179601	chr4	185432801	185433200	+	0	NA	intron (NM_001114357, intron 2 of 6)	intron (NM_001114357, intron 2 of 6)	3666	NM_001346007	441054		NM_001114357	ENSG00000205129	CFAP96	C4orf47	cilia and flagella associated protein 96	protein-coding
35887	chr11	2402351	2402450	+	0	NA	5' UTR (NM_005706, exon 2 of 3)	5' UTR (NM_005706, exon 2 of 3)	1650	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
41811	chr11	66975001	66975230	+	0	NA	promoter-TSS (NM_001353554)	promoter-TSS (NM_001353554)	-189	NM_001353554	254439		NM_001136485	ENSG00000173237	C11orf86	FACI	chromosome 11 open reading frame 86	protein-coding
230624	chr9	128633921	128634750	+	0	NA	TTS (NM_003127)	TTS (NM_003127)	22515	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
165509	chr3	100275151	100275450	+	0	NA	intron (NM_001199198, intron 1 of 18)	AluJb|SINE|Alu	14308	NM_001199198	55773		NM_018309	ENSG00000036054	TBC1D23	NS4ATP1|PCH11	TBC1 domain family member 23	protein-coding
146073	chr20	47505071	47505480	+	0	NA	intron (NM_181659, intron 1 of 22)	AluSx|SINE|Alu	3388	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
42386	chr11	68870251	68870550	+	0	NA	Intergenic	AluYc|SINE|Alu	-28469	NM_001031847	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
108526	chr18	74368851	74369650	+	0	NA	Intergenic	Intergenic	-40198	NR_131977	101927606		NR_131977	ENSG00000259779	LINC01922	-	long intergenic non-protein coding RNA 1922	ncRNA
81447	chr16	8875501	8875700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6588	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
53972	chr12	74538601	74539650	+	0	NA	3' UTR (NM_001136262, exon 1 of 1)	3' UTR (NM_001136262, exon 1 of 1)	1290	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
127958	chr2	46601401	46601630	+	0	NA	intron (NM_173074, intron 4 of 6)	intron (NM_173074, intron 4 of 6)	15526	NM_002643	5281		NM_002643	ENSG00000151665	PIGF	OORS	phosphatidylinositol glycan anchor biosynthesis class F	protein-coding
143084	chr20	21572021	21572280	+	0	NA	intron (NR_109880, intron 1 of 3)	intron (NR_109880, intron 1 of 3)	2126	NR_109880	101929625		NR_109880		LINC01727	IRENA	long intergenic non-protein coding RNA 1727	ncRNA
12785	chr1	109739771	109741000	+	0	NA	non-coding (NR_024537, exon 2 of 8)	non-coding (NR_024537, exon 2 of 8)	653	NR_024537	2947		NM_000849	ENSG00000134202	GSTM3	GST5|GSTB|GSTM3-3|GSTM3TV2|GTM3|hGSTM3-3	glutathione S-transferase mu 3	protein-coding
154933	chr22	37222021	37223030	+	0	NA	Intergenic	Intergenic	-10048	NM_001051	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
179951	chr5	780201	781400	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	3929	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
41118	chr11	65556621	65557180	+	0	NA	intron (NM_001164266, intron 1 of 26)	intron (NM_001164266, intron 1 of 26)	1328	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
30353	chr10	77835871	77836750	+	0	NA	intron (NM_004747, intron 7 of 31).2	intron (NM_004747, intron 7 of 31).2	90445	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
220973	chr8	115274751	115275250	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	393013	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
74397	chr15	58925621	58925880	+	0	NA	intron (NR_135043, intron 1 of 18)	intron (NR_135043, intron 1 of 18)	7929	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
53301	chr12	64475971	64476130	+	0	NA	intron (NM_013254, intron 6 of 20)	L1PA17|LINE|L1	23930	NM_013254	29110		NM_013254	ENSG00000183735	TBK1	FTDALS4|IIAE8|NAK|T2K	TANK binding kinase 1	protein-coding
36051	chr11	2938701	2939550	+	0	NA	Intergenic	Intergenic	-9705	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
99513	chr17	50271201	50271550	+	0	NA	promoter-TSS (NM_001168215)	promoter-TSS (NM_001168215)	-31	NM_001168215	162461		NM_153229	ENSG00000167105	TMEM92	-	transmembrane protein 92	protein-coding
128393	chr2	55052071	55052750	+	0	NA	intron (NM_001321904, intron 2 of 9)	intron (NM_001321904, intron 2 of 9)	-1138	NM_001321859	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133593	chr2	121701951	121702350	+	0	NA	intron (NR_037857, intron 2 of 3)	LTR8|LTR|ERV1	34725	NM_032390	84365		NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
102141	chr17	75089621	75090230	+	0	NA	intron (NM_001369668, intron 1 of 5)	HY1|scRNA|scRNA	1971	NM_004695	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
111870	chr19	4645671	4646530	+	0	NA	intron (NM_001167942, intron 1 of 1)	L2a|LINE|L2	6083	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
128142	chr2	48352971	48353800	+	0	NA	intron (NR_164691, intron 2 of 4)	L2c|LINE|L2	38703	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
111345	chr19	3664471	3664630	+	0	NA	intron (NM_001300849, intron 3 of 16)	intron (NM_001300849, intron 3 of 16)	35918	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
96143	chr17	39669751	39670800	+	0	NA	TTS (NM_001291733)	TTS (NM_001291733)	1822	NM_002686	5409		NM_002686	ENSG00000141744	PNMT	PENT|PNMTase	phenylethanolamine N-methyltransferase	protein-coding
25109	chr10	3948601	3949680	+	0	NA	Intergenic	Intergenic	-42020	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
21101	chr1	203364751	203364850	+	0	NA	Intergenic	Intergenic	-13678	NM_002023	2331		NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding
44551	chr11	108135901	108136500	+	0	NA	intron (NM_000019, intron 5 of 11)	intron (NM_000019, intron 5 of 11)	14633	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
146379	chr20	49282071	49282350	+	0	NA	intron (NR_003604, intron 4 of 4)	AluSg|SINE|Alu	1527	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
88590	chr16	85580321	85580580	+	0	NA	Intergenic	Intergenic	-30959	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
189071	chr5	170272171	170272900	+	0	NA	intron (NM_005565, intron 6 of 20)	MER57F|LTR|ERV1	25242	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
77449	chr15	84342821	84343080	+	0	NA	Intergenic	Intergenic	-79569	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
214746	chr7	151055751	151056050	+	0	NA	intron (NM_004935, intron 5 of 11)	intron (NM_004935, intron 5 of 11)	1997	NM_001164410	1020		NM_004935	ENSG00000164885	CDK5	LIS7|PSSALRE	cyclin dependent kinase 5	protein-coding
9974	chr1	54945021	54945830	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-35203	NM_182532	199964		NM_182532	ENSG00000143001	TMEM61	-	transmembrane protein 61	protein-coding
143317	chr20	25394471	25394630	+	0	NA	Intergenic	LTR3A|LTR|ERVK	-3715	NM_001042472	26090		NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12	abhydrolase domain containing 12, lysophospholipase	protein-coding
162486	chr3	48563101	48563300	+	0	NA	TTS (NM_000094)	TTS (NM_000094)	581	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
21808	chr1	207282101	207282300	+	0	NA	Intergenic	Intergenic	-39478	NM_001300903	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
128099	chr2	47917651	47917950	+	0	NA	Intergenic	Intergenic	-11302	NM_001190274	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
216444	chr8	19495401	19495600	+	0	NA	intron (NR_148900, intron 3 of 9)	intron (NR_148900, intron 3 of 9)	107045	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
117374	chr19	19579121	19579580	+	0	NA	intron (NM_025245, intron 2 of 7)	AluSc|SINE|Alu	39337	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
204482	chr7	4746101	4747550	+	0	NA	intron (NM_001037165, intron 2 of 8)	intron (NM_001037165, intron 2 of 8)	-28798	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
173040	chr4	4870201	4870600	+	0	NA	Intergenic	Intergenic	10735	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
88565	chr16	85552151	85552250	+	0	NA	Intergenic	AluY|SINE|Alu	-59209	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
190411	chr5	179816821	179817550	+	0	NA	intron (NM_001142298, intron 2 of 8).2	CpG	-3720	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
84432	chr16	30389971	30390130	+	0	NA	intron (NM_001214907, intron 1 of 1)	AluJr|SINE|Alu	-5370	NM_001214909	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
199214	chr6	111801201	111801400	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-41383	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
169337	chr3	160012151	160012250	+	0	NA	intron (NR_108088, intron 4 of 9)	intron (NR_108088, intron 4 of 9)	-8449	NR_104132	730109		NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
237041	chrX	103176251	103176700	+	0	NA	Intergenic	Intergenic	-38617	NM_001127688	56271		NM_001080425	ENSG00000102409	BEX4	BEXL1	brain expressed X-linked 4	protein-coding
57730	chr12	122888201	122889280	+	0	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	7384	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
221293	chr8	122988151	122988250	+	0	NA	Intergenic	L1MC4|LINE|L1	37572	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
92501	chr17	8883371	8883530	+	0	NA	intron (NM_001142633, intron 15 of 18)	L2b|LINE|L2	-15773	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
226766	chr9	76454501	76455100	+	0	NA	intron (NM_001097634, intron 1 of 2)	THE1D|LTR|ERVL-MaLR	-4352	NM_001097633	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
231457	chr9	131277801	131280700	+	0	NA	Intergenic	L2a|LINE|L2	-2740	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
101459	chr17	67457621	67457880	+	0	NA	intron (NM_181671, intron 1 of 9)	L1MEd|LINE|L1	-13739	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
86716	chr16	67559321	67559580	+	0	NA	Intergenic	AluJr|SINE|Alu	2859	NR_158165	107984813		NR_158165	ENSG00000259804	CTCF-DT	-	CTCF divergent transcript	ncRNA
168943	chr3	152368851	152368950	+	0	NA	intron (NM_001376837, intron 2 of 9)	L1PA7|LINE|L1	-27910	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
179739	chr5	226521	226780	+	0	NA	intron (NM_001330758, intron 5 of 12)	AluY|SINE|Alu	8330	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
75202	chr15	64827151	64827550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1703	NM_001286497	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
30634	chr10	80447371	80447930	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-6660	NM_001351267	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
190597	chr5	181154701	181154900	+	0	NA	promoter-TSS (NM_206880)	promoter-TSS (NM_206880)	-143	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
4086	chr1	19121271	19121430	+	0	NA	exon (NM_020765, exon 68 of 106)	exon (NM_020765, exon 68 of 106)	88916	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
174508	chr4	39974821	39975300	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluSx1|SINE|Alu	2851	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
33967	chr10	124647551	124648300	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-56103	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
49835	chr12	32312101	32312330	+	0	NA	intron (NR_148725, intron 4 of 9)	intron (NR_148725, intron 4 of 9)	-87343	NM_001384126	121512		NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
94485	chr17	29280201	29280830	+	0	NA	intron (NM_020772, intron 2 of 3)	AluJb|SINE|Alu	13633	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
48608	chr12	10359821	10360250	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-3734	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
161242	chr3	39231221	39231680	+	0	NA	Intergenic	L1MDa|LINE|L1	-38855	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
130649	chr2	86184301	86184500	+	0	NA	intron (NM_001100169, intron 1 of 14)	AluJr|SINE|Alu	8708	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
200647	chr6	137031401	137031880	+	0	NA	intron (NM_001278724, intron 1 of 5)	Tigger3a|DNA|TcMar-Tigger	12672	NM_001278722	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
202991	chr6	162733501	162733750	+	0	NA	intron (NM_001080378, intron 2 of 5)	L2a|LINE|L2	5655	NM_001080379	135138		NM_152410	ENSG00000112530	PACRG	BUG21|GLUP|HAK005771|PACRG2.1|PARK2CRG|pf12	parkin coregulated	protein-coding
84254	chr16	30014101	30014300	+	0	NA	promoter-TSS (NM_001282062)	promoter-TSS (NM_001282062)	-604	NM_001282062	8448		NM_003586	ENSG00000149927	DOC2A	Doc2	double C2 domain alpha	protein-coding
228992	chr9	113574551	113574950	+	0	NA	intron (NM_001351526, intron 2 of 8)	intron (NM_001351526, intron 2 of 8)	-6178	NM_001282922	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
120372	chr19	43624871	43625450	+	0	NA	exon (NM_145296, exon 7 of 9)	exon (NM_145296, exon 7 of 9)	-5531	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
1173	chr1	2222521	2222780	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5669	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
224464	chr9	15513301	15513950	+	0	NA	Intergenic	Intergenic	-2606	NM_001128217	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
192462	chr6	24918701	24920200	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-8402	NM_014722	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
72435	chr15	31508321	31508830	+	0	NA	intron (NM_130901, intron 9 of 13)	AluY|SINE|Alu	181740	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
54357	chr12	89701001	89701280	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	7698	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
8932	chr1	44032421	44033150	+	0	NA	Intergenic	Intergenic	-1323	NM_001328630	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
140186	chr2	231668721	231668980	+	0	NA	Intergenic	Intergenic	-39675	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
127870	chr2	45825321	45825580	+	0	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	173775	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
214542	chr7	150522621	150523080	+	0	NA	Intergenic	MER11C|LTR|ERVK	7978	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
157089	chr22	42623201	42623830	+	0	NA	intron (NM_001129819, intron 8 of 8)	intron (NM_001129819, intron 8 of 8)	8270	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
226475	chr9	71749471	71750150	+	0	NA	intron (NM_001135820, intron 2 of 22)	intron (NM_001135820, intron 2 of 22)	18703	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
127345	chr2	39118821	39119450	+	0	NA	intron (NM_001382394, intron 1 of 22)	intron (NM_001382394, intron 1 of 22)	1916	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
22701	chr1	223992231	223993630	+	0	NA	promoter-TSS (NR_132119)	promoter-TSS (NR_132119)	200	NR_136593	100287497		NR_136590		SEPTIN7P13	-	septin 7 pseudogene 13	pseudo
206584	chr7	35708221	35708480	+	0	NA	Intergenic	AluJb|SINE|Alu	-8087	NR_108083	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
71403	chr14	105531171	105531530	+	0	NA	promoter-TSS (NR_135205)	promoter-TSS (NR_135205)	-505	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
37290	chr11	14723521	14723980	+	0	NA	intron (NM_001363569, intron 1 of 15)	AluJr4|SINE|Alu	79946	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
216007	chr8	8963421	8963680	+	0	NA	Intergenic	CpG	-39347	NM_153332	90459		NM_153332	ENSG00000104626	ERI1	3'HEXO|HEXO|HXAL|SEMDGC|SEMDGS|THEX1	exoribonuclease 1	protein-coding
57627	chr12	122505721	122505980	+	0	NA	intron (NR_036436, intron 9 of 9)	AluSx|SINE|Alu	-4918	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
10682	chr1	72283701	72284080	+	0	NA	Intergenic	CpG	-1351	NM_173808	257194		NM_173808	ENSG00000172260	NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding
32093	chr10	101139021	101140180	+	0	NA	intron (NR_130724, intron 1 of 2)	CpG	1666	NR_130724	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
81826	chr16	11568451	11568880	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	17708	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
212322	chr7	127350871	127351230	+	0	NA	Intergenic	Charlie24|DNA|hAT-Charlie	41658	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
106928	chr18	26225951	26227630	+	0	NA	non-coding (NR_121653, exon 1 of 16)	non-coding (NR_121653, exon 1 of 16)	345	NM_005640	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
133020	chr2	111747101	111748480	+	0	NA	Intergenic	Intergenic	23344	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
160244	chr3	23974821	23975550	+	0	NA	intron (NR_110524, intron 8 of 8)	AluJo|SINE|Alu	-28623	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
53609	chr12	68117301	68118650	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	41765	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
203573	chr7	909871	910130	+	0	NA	intron (NM_006869, intron 4 of 10)	intron (NM_006869, intron 4 of 10)	10889	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
139710	chr2	227545901	227546130	+	0	NA	intron (NM_001135189, intron 9 of 11)	L1PA5|LINE|L1	72640	NR_149019	729968		NR_149019		LOC729968	-	spore coat protein SP96	ncRNA
121374	chr19	46859601	46862700	+	0	NA	5' UTR (NM_004491, exon 1 of 7)	5' UTR (NM_004491, exon 1 of 7)	153	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
183848	chr5	87070151	87070450	+	0	NA	Intergenic	Intergenic	44654	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
136513	chr2	177245251	177245880	+	0	NA	intron (NM_001313902, intron 1 of 3)	MIRc|SINE|MIR	10445	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
18394	chr1	161401971	161402130	+	0	NA	Intergenic	Intergenic	-34174	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
37265	chr11	14666821	14667080	+	0	NA	intron (NM_001363569, intron 1 of 15)	L1PA3|LINE|L1	23146	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
6292	chr1	27613321	27613580	+	0	NA	intron (NM_001042747, intron 11 of 12)	AluSx1|SINE|Alu	-9306	NM_001371928	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
223718	chr8	144459271	144459430	+	0	NA	intron (NM_138496, intron 2 of 4)	intron (NM_138496, intron 2 of 4)	3189	NR_162109	113218512		NR_162109		MIR10400	-	microRNA 10400	ncRNA
126251	chr2	27084401	27084680	+	0	NA	intron (NM_007046, intron 5 of 7)	intron (NM_007046, intron 5 of 7)	-2232	NM_006488	3795		NM_000221	ENSG00000138030	KHK	FRUCTU	ketohexokinase	protein-coding
67950	chr14	74804201	74804500	+	0	NA	intron (NM_019589, intron 6 of 20)	L2c|LINE|L2	41034	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
116204	chr19	17488521	17489700	+	0	NA	exon (NM_198580, exon 6 of 12)	exon (NM_198580, exon 6 of 12)	18586	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
209680	chr7	80151371	80151730	+	0	NA	intron (NM_001256414, intron 1 of 7)	intron (NM_001256414, intron 1 of 7)	15766	NM_001256414	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
185594	chr5	131405951	131406580	+	0	NA	Intergenic	Intergenic	142212	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
28319	chr10	46284271	46285330	+	0	NA	promoter-TSS (NR_160731)	promoter-TSS (NR_160731)	-50	NR_160731	105378577		NR_160731		LOC105378577	-	uncharacterized LOC105378577	ncRNA
45484	chr11	118606551	118606650	+	0	NA	5' UTR (NM_015157, exon 1 of 24)	5' UTR (NM_015157, exon 1 of 24)	164	NM_015157	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
86512	chr16	67108501	67108700	+	0	NA	Intergenic	AluJo|SINE|Alu	-1341	NM_001320542	80262		NM_025187	ENSG00000125149	PHAF1	C16orf6|C16orf70|LIN10|MYTHO|lin-10	phagosome assembly factor 1	protein-coding
153429	chr22	25061471	25061630	+	0	NA	intron (NM_001145206, intron 4 of 10)	MIRb|SINE|MIR	33576	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
2954	chr1	11910971	11911130	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	2896	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
226562	chr9	72371101	72371300	+	0	NA	Intergenic	Intergenic	-5992	NM_001102420	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
109186	chr19	371871	372230	+	0	NA	intron (NM_016585, intron 5 of 7)	Kanga1c|DNA|TcMar-Tc2	3976	NM_199202	51298		NM_016585	ENSG00000105549	SPMAP2	CT56|THEG|THEG1	sperm microtubule associated protein 2	protein-coding
169441	chr3	165185771	165186000	+	0	NA	TTS (NM_014926)	TTS (NM_014926)	10499	NM_001318810	22865		NM_014926	ENSG00000121871	SLITRK3	-	SLIT and NTRK like family member 3	protein-coding
152187	chr22	20106251	20106550	+	0	NA	intron (NM_022720, intron 10 of 13)	intron (NM_022720, intron 10 of 13)	8351	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
229028	chr9	114282951	114283250	+	0	NA	intron (NM_032888, intron 39 of 60)	intron (NM_032888, intron 39 of 60)	-39998	NM_000607	5004		NM_000607	ENSG00000229314	ORM1	A1AG1|AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
192575	chr6	25872721	25873400	+	0	NA	intron (NM_001098486, intron 1 of 12)	intron (NM_001098486, intron 1 of 12)	1183	NM_001098486	10786		NM_006632	ENSG00000124564	SLC17A3	GOUT4|NPT4|UAQTL4	solute carrier family 17 member 3	protein-coding
217293	chr8	27370471	27371230	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	45286	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
95430	chr17	36117401	36118000	+	0	NA	Intergenic	Intergenic	13873	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
139567	chr2	224938701	224939200	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	8099	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
209569	chr7	77355871	77356030	+	0	NA	intron (NR_146937, intron 14 of 31)	AluJo|SINE|Alu	-59248	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
194820	chr6	34273371	34273530	+	0	NA	Intergenic	Intergenic	-24342	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
1213	chr1	2262571	2263350	+	0	NA	intron (NM_003036, intron 1 of 6)	AluSx1|SINE|Alu	34641	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
132308	chr2	105299371	105299550	+	0	NA	intron (NM_001328646, intron 2 of 11)	intron (NM_001328646, intron 2 of 11)	30196	NR_137328	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
72957	chr15	40468521	40469980	+	0	NA	Intergenic	MIR|SINE|MIR	-1734	NM_130468	113189		NM_130468	ENSG00000169105	CHST14	ATCS|D4ST1|EDSMC1|HNK1ST	carbohydrate sulfotransferase 14	protein-coding
86388	chr16	66607421	66607680	+	0	NA	intron (NM_144601, intron 2 of 5)	L1ME2z|LINE|L1	2819	NR_037619	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
236885	chrX	82737571	82738130	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-770440	NM_000307	5456		NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
215730	chr8	1777771	1777930	+	0	NA	intron (NM_018941, intron 2 of 2)	Tigger3b|DNA|TcMar-Tigger	-13266	NR_134303	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
170629	chr3	187024871	187025700	+	0	NA	intron (NM_003032, intron 1 of 6)	intron (NM_003032, intron 1 of 6)	3430	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
147209	chr20	57381621	57382430	+	0	NA	Intergenic	Intergenic	-9371	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
151535	chr21	46483301	46484080	+	0	NA	intron (NM_206891, intron 1 of 19)	MIRb|SINE|MIR	21219	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
4680	chr1	22704421	22704700	+	0	NA	Intergenic	Intergenic	-6278	NM_004442	2048		NM_004442	ENSG00000133216	EPHB2	BDPLT22|CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5	EPH receptor B2	protein-coding
181869	chr5	54249621	54250430	+	0	NA	intron (NM_019087, intron 1 of 4)	MSTA|LTR|ERVL-MaLR	60548	NM_019087	54622		NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
137480	chr2	197129101	197129530	+	0	NA	intron (NM_153697, intron 4 of 9)	AluSx|SINE|Alu	-68676	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
107433	chr18	46211051	46211150	+	0	NA	intron (NM_145055, intron 1 of 4)	L2|LINE|L2	37066	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
228274	chr9	98066201	98066600	+	0	NA	intron (NM_018946, intron 2 of 5)	Charlie1|DNA|hAT-Charlie	9668	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
124892	chr2	8424051	8424350	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-95781	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
176178	chr4	83333221	83333480	+	0	NA	intron (NM_001199830, intron 1 of 10)	MIR|SINE|MIR	1463	NM_001199830	10855		NM_006665	ENSG00000173083	HPSE	HPA|HPA1|HPR1|HPSE1|HSE1	heparanase	protein-coding
231622	chr9	131580201	131580600	+	0	NA	intron (NM_001377935, intron 25 of 26)	intron (NM_001377935, intron 25 of 26)	34877	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
17271	chr1	156414551	156414800	+	0	NA	non-coding (NR_168072, exon 2 of 4)	non-coding (NR_168072, exon 2 of 4)	5754	NR_029691	407046		NR_029691	ENSG00000207933	MIR9-1	MIRN9-1|hsa-mir-9-1|miRNA9-1|mir-9-1	microRNA 9-1	ncRNA
190579	chr5	180976671	180976830	+	0	NA	Intergenic	LTR19B|LTR|ERV1	-12096	NM_197975	10917		NM_006707	ENSG00000168903	BTNL3	BTN9.1|BTNLR	butyrophilin like 3	protein-coding
33749	chr10	122424571	122424730	+	0	NA	intron (NM_001377258, intron 9 of 10)	intron (NM_001377258, intron 9 of 10)	7685	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
181735	chr5	50693301	50693500	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	25986	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
105261	chr17	82443521	82443780	+	0	NA	non-coding (NR_036514, exon 6 of 6)	non-coding (NR_036514, exon 6 of 6)	6076	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
64502	chr14	24336801	24337030	+	0	NA	exon (NM_006871, exon 9 of 10)	exon (NM_006871, exon 9 of 10)	-1844	NM_001198568	196883		NM_139247	ENSG00000129467	ADCY4	AC4	adenylate cyclase 4	protein-coding
7148	chr1	32220851	32221230	+	0	NA	promoter-TSS (NM_003757)	promoter-TSS (NM_003757)	-544	NM_003757	8668		NM_003757	ENSG00000084623	EIF3I	EIF3S2|PRO2242|TRIP-1|TRIP1|eIF3-beta|eIF3-p36	eukaryotic translation initiation factor 3 subunit I	protein-coding
205552	chr7	20299951	20300050	+	0	NA	intron (NR_110117, intron 2 of 4)	intron (NR_110117, intron 2 of 4)	3292	NR_110117	101927769		NR_110117	ENSG00000226097	LOC101927769	-	uncharacterized LOC101927769	ncRNA
39954	chr11	62563271	62563430	+	0	NA	intron (NM_001404, intron 7 of 9)	AluY|SINE|Alu	-3044	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
27850	chr10	40185801	40186230	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1489419	NR_045000	399746		NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
90459	chr17	1379851	1380750	+	0	NA	intron (NR_024058, intron 1 of 6)	AluSx|SINE|Alu	19922	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
112923	chr19	7669901	7671100	+	0	NA	TTS (NM_001193374)	TTS (NM_001193374)	1451	NM_001385727	56729		NM_020415	ENSG00000104918	RETN	ADSF|FIZZ3|RENT|RETN1|RSTN|XCP1	resistin	protein-coding
29713	chr10	72074771	72074930	+	0	NA	intron (NM_014767, intron 2 of 11)	intron (NM_014767, intron 2 of 11)	13701	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
115714	chr19	16228521	16228780	+	0	NA	intron (NM_001130524, intron 9 of 12)	intron (NM_001130524, intron 9 of 12)	30739	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
155794	chr22	39298721	39299030	+	0	NA	Intergenic	Intergenic	15036	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
145464	chr20	43721971	43722950	+	0	NA	Intergenic	L1ME3A|LINE|L1	4542	NM_001008901	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
172625	chr4	2523801	2524100	+	0	NA	Intergenic	AluSp|SINE|Alu	-11425	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
2611	chr1	10034671	10034830	+	0	NA	intron (NM_001105562, intron 1 of 27)	intron (NM_001105562, intron 1 of 27)	1792	NM_006048	10277		NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
89142	chr16	88517601	88517800	+	0	NA	intron (NM_153813, intron 4 of 9)	(GGTG)n|Simple_repeat|Simple_repeat	13353	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
167995	chr3	136749021	136749900	+	0	NA	intron (NM_005862, intron 1 of 33)	MLT1E1A|LTR|ERVL-MaLR	2918	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
132971	chr2	111480251	111481150	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	14461	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
3844	chr1	16915871	16916030	+	0	NA	Intergenic	AluSz|SINE|Alu	-5981	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
46721	chr11	128871901	128872100	+	0	NA	Intergenic	HAL1|LINE|L1	-4704	NM_153764	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
69294	chr14	93089971	93090130	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	22598	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
157383	chr22	44727971	44728130	+	0	NA	intron (NM_181334, intron 4 of 14)	intron (NM_181334, intron 4 of 14)	-24508	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
83423	chr16	27239521	27240180	+	0	NA	intron (NM_145080, intron 2 of 7)	intron (NM_145080, intron 2 of 7)	-28355	NR_037184	400512		NR_037184	ENSG00000245888	NSMCE1-DT	-	NSMCE1 divergent transcript	ncRNA
15012	chr1	148248671	148249100	+	0	NA	Intergenic	AluJb|SINE|Alu	-1814	NR_120331	101927468		NR_120331	ENSG00000227733	LOC101927468	-	uncharacterized LOC101927468	ncRNA
53063	chr12	57701421	57701900	+	0	NA	intron (NM_001261420, intron 5 of 13)	L1ME3Cz|LINE|L1	7528	NM_006812	10956		NM_006812	ENSG00000135506	OS9	ERLEC2|OS-9	OS9 endoplasmic reticulum lectin	protein-coding
118405	chr19	35752251	35752550	+	0	NA	intron (NM_001369780, intron 2 of 8)	intron (NM_001369780, intron 2 of 8)	3586	NM_001369780	55957		NM_019104	ENSG00000267796	LIN37	F25965|ZK418.4|lin-37	lin-37 DREAM MuvB core complex component	protein-coding
111608	chr19	4106751	4106850	+	0	NA	intron (NM_030662, intron 3 of 10)	intron (NM_030662, intron 3 of 10)	17322	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
66573	chr14	63439171	63439330	+	0	NA	intron (NR_104104, intron 2 of 12)	MIRb|SINE|MIR	68988	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
83375	chr16	25258901	25259280	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-1245	NM_001012981	342357		NM_001012981	ENSG00000155592	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding
2282	chr1	8949301	8949700	+	0	NA	intron (NM_001215, intron 2 of 7)	intron (NM_001215, intron 2 of 7)	3632	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
199857	chr6	127784371	127784730	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	70638	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
114088	chr19	11109371	11109530	+	0	NA	intron (NM_001195800, intron 4 of 15)	AluJo|SINE|Alu	-4024	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
146397	chr20	49297421	49298300	+	0	NA	Intergenic	Intergenic	17177	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
122721	chr19	49989021	49989280	+	0	NA	intron (NM_001308420, intron 11 of 12)	intron (NM_001308420, intron 11 of 12)	19486	NM_001348364	400709		NM_001348364	ENSG00000161643	SIGLEC16	SIGLECP16|Siglec-P16	sialic acid binding Ig like lectin 16	protein-coding
108722	chr18	77086801	77087330	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	45718	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
178453	chr4	148056901	148057880	+	0	NA	intron (NM_024605, intron 20 of 22)	MIRb|SINE|MIR	274795	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
175915	chr4	80197151	80198350	+	0	NA	5' UTR (NM_001099403, exon 1 of 4)	5' UTR (NM_001099403, exon 1 of 4)	247	NM_001099403	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
128077	chr2	47870451	47870550	+	0	NA	intron (NM_001190274, intron 1 of 22)	MLT1C|LTR|ERVL-MaLR	18219	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
203240	chr6	168919421	168919880	+	0	NA	Intergenic	Intergenic	44732	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
47529	chr12	4216901	4217380	+	0	NA	Intergenic	Intergenic	-56622	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
111958	chr19	4817671	4818450	+	0	NA	exon (NM_182919, exon 2 of 2)	exon (NM_182919, exon 2 of 2)	13652	NM_001385680	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
155693	chr22	39081971	39082330	+	0	NA	non-coding (NR_146179, exon 3 of 3)	non-coding (NR_146179, exon 3 of 3)	4875	NM_001349438	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
11185	chr1	87337701	87337900	+	0	NA	intron (NM_001369491, intron 2 of 4)	intron (NM_001369491, intron 2 of 4)	6056	NM_001369491	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
115613	chr19	16072921	16073180	+	0	NA	intron (NM_001367836, intron 1 of 8)	A-rich|Low_complexity|Low_complexity	-3445	NM_001367837	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
42718	chr11	72683551	72684150	+	0	NA	Intergenic	Intergenic	-9428	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
57974	chr12	123972201	123974330	+	0	NA	promoter-TSS (NM_001304961)	promoter-TSS (NM_001304961)	50	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
46883	chr11	134031071	134031700	+	0	NA	promoter-TSS (NR_027276)	promoter-TSS (NR_027276)	-887	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
43507	chr11	78683151	78683250	+	0	NA	intron (NM_001098816, intron 29 of 33)	L1HS|LINE|L1	-108336	NM_001243251	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
73806	chr15	48801171	48801330	+	0	NA	intron (NM_001194998, intron 2 of 26)	intron (NM_001194998, intron 2 of 26)	9819	NM_001194998	22995		NM_014985	ENSG00000103995	CEP152	MCPH4|MCPH9|SCKL5	centrosomal protein 152	protein-coding
179528	chr4	184907271	184907430	+	0	NA	Intergenic	Intergenic	-7889	NR_039977	100506229		NR_039975	ENSG00000249173	LINC01093	-	long intergenic non-protein coding RNA 1093	ncRNA
63454	chr13	114124621	114125380	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	7623	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
127521	chr2	42311071	42311430	+	0	NA	intron (NM_019063, intron 17 of 22)	intron (NM_019063, intron 17 of 22)	48788	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
146891	chr20	51525101	51526180	+	0	NA	intron (NM_001258292, intron 1 of 9)	L2b|LINE|L2	17079	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
199351	chr6	115833751	115834230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-190155	NR_134602	105377962		NR_134602	ENSG00000228777	LINC02534	-	long intergenic non-protein coding RNA 2534	ncRNA
148389	chr20	63909301	63910150	+	0	NA	intron (NM_025219, intron 1 of 4)	intron (NM_025219, intron 1 of 4)	-9724	NR_030637	100126329		NR_030637	ENSG00000283206	MIR941-1	MIRN941-1|mir-941-1	microRNA 941-1	ncRNA
200668	chr6	137197851	137198230	+	0	NA	exon (NM_000416, exon 7 of 7)	exon (NM_000416, exon 7 of 7)	21156	NM_001363526	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
55518	chr12	105109671	105110180	+	0	NA	intron (NM_001293640, intron 1 of 32)	intron (NM_001293640, intron 1 of 32)	2194	NM_015275	23325		NM_015275	ENSG00000136051	WASHC4	KIAA1033|MRT43|SWIP	WASH complex subunit 4	protein-coding
217688	chr8	30118501	30118700	+	0	NA	intron (NM_001128208, intron 3 of 3)	LTR5B|LTR|ERVK	23192	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
176062	chr4	82433171	82433330	+	0	NA	intron (NM_021204, intron 1 of 5)	intron (NM_021204, intron 1 of 5)	2660	NM_001292017	58478		NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145|mtnC	enolase-phosphatase 1	protein-coding
58146	chr12	124919101	124919600	+	0	NA	Intergenic	LTR8|LTR|ERV1	3803	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
16559	chr1	154970001	154970200	+	0	NA	exon (NM_001130040, exon 1 of 12)	exon (NM_001130040, exon 1 of 12)	647	NM_001130040	6464		NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding
84930	chr16	31263221	31263880	+	0	NA	intron (NM_000632, intron 2 of 29)	L1ME4b|LINE|L1	3575	NM_000632	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
141319	chr2	240459101	240459300	+	0	NA	intron (NM_002081, intron 2 of 8)	intron (NM_002081, intron 2 of 8)	-2500	NR_161169	100130449		NR_024014	ENSG00000218416	GPC1-AS1	-	GPC1 antisense RNA 1	ncRNA
206036	chr7	27094201	27094600	+	0	NA	3' UTR (NM_005522, exon 2 of 2)	3' UTR (NM_005522, exon 2 of 2)	1600	NM_005522	3198		NM_005522	ENSG00000105991	HOXA1	BSAS|HOX1|HOX1F	homeobox A1	protein-coding
215398	chr7	157495901	157496300	+	0	NA	intron (NR_110157, intron 3 of 3)	AluSz|SINE|Alu	29869	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
55382	chr12	104358201	104358700	+	0	NA	Intergenic	MIRc|SINE|MIR	54711	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
182089	chr5	55996921	55997300	+	0	NA	intron (NR_102755, intron 1 of 1)	intron (NR_102755, intron 1 of 1)	1943	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
116810	chr19	18539101	18539500	+	0	NA	intron (NM_012181, intron 4 of 8)	intron (NM_012181, intron 4 of 8)	4273	NM_012181	23770		NM_012181	ENSG00000105701	FKBP8	FKBP38|FKBPr38	FKBP prolyl isomerase 8	protein-coding
242	chr1	906351	906450	+	0	NA	Intergenic	Intergenic	13292	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
156890	chr22	42161201	42161400	+	0	NA	3' UTR (NM_181492, exon 5 of 5)	3' UTR (NM_181492, exon 5 of 5)	-16746	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
63232	chr13	113920021	113920480	+	0	NA	intron (NR_164112, intron 6 of 7)	intron (NR_164112, intron 6 of 7)	8741	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
4037	chr1	18948171	18949050	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	8066	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
217415	chr8	28378101	28378300	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	8260	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
30018	chr10	73783451	73783550	+	0	NA	3' UTR (NM_203298, exon 3 of 3)	3' UTR (NM_203298, exon 3 of 3)	1452	NM_203298	118487		NM_203298	ENSG00000172586	CHCHD1	C10orf34|C2360|MRP-S37|mS37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding
31716	chr10	97678171	97678330	+	0	NA	intron (NM_021732, intron 2 of 2)	intron (NM_021732, intron 2 of 2)	8991	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
21607	chr1	206562621	206563980	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	6136	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
161126	chr3	38420851	38421100	+	0	NA	intron (NR_146068, intron 15 of 16)	MER9B|LTR|ERVK	-32915	NM_001106	93		NM_001106	ENSG00000114739	ACVR2B	ACTRIIB|ActR-IIB|HTX4	activin A receptor type 2B	protein-coding
8909	chr1	43972771	43973230	+	0	NA	3' UTR (NM_001319167, exon 6 of 6)	3' UTR (NM_001319167, exon 6 of 6)	-1960	NM_001039457	533		NM_004047	ENSG00000117410	ATP6V0B	ATP6F|HATPL|VMA16	ATPase H+ transporting V0 subunit b	protein-coding
17751	chr1	159010621	159010750	+	0	NA	intron (NM_001376587, intron 1 of 11)	intron (NM_001376587, intron 1 of 11)	778	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
60665	chr13	43023151	43024530	+	0	NA	intron (NM_013238, intron 1 of 5)	intron (NM_013238, intron 1 of 5)	254	NM_013238	29103		NM_013238	ENSG00000120675	DNAJC15	DNAJD1|HSD18|MCJ	DnaJ heat shock protein family (Hsp40) member C15	protein-coding
205635	chr7	22586621	22586880	+	0	NA	Intergenic	MER21C|LTR|ERVL	23413	NR_038393	100506178		NR_038393	ENSG00000232759	STEAP1B-AS1	-	STEAP1B antisense RNA 1	ncRNA
44237	chr11	96553571	96553930	+	0	NA	Intergenic	Intergenic	45325	NR_135097	105369443		NR_135097	ENSG00000256684	LINC02737	-	long intergenic non-protein coding RNA 2737	ncRNA
128226	chr2	54103751	54104050	+	0	NA	intron (NM_001320586, intron 4 of 6)	intron (NM_001320586, intron 4 of 6)	-11715	NM_001320590	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
94761	chr17	30819601	30819800	+	0	NA	intron (NM_015986, intron 1 of 7)	intron (NM_015986, intron 1 of 7)	4992	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
80030	chr16	1946671	1947430	+	0	NA	exon (NM_005061, exon 6 of 10)	exon (NM_005061, exon 6 of 10)	-3851	NM_001382264	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
99704	chr17	50860751	50860850	+	0	NA	Intergenic	AluSx1|SINE|Alu	5554	NM_001243885	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
129936	chr2	73779371	73780580	+	0	NA	exon (NM_003584, exon 1 of 9)	exon (NM_003584, exon 1 of 9)	182	NM_003584	8446		NM_003584	ENSG00000144048	DUSP11	PIR1	dual specificity phosphatase 11	protein-coding
163944	chr3	52809871	52810030	+	0	NA	TTS (NM_002217)	TTS (NM_002217)	-13985	NR_046615	100873993		NR_046615	ENSG00000239799	ITIH4-AS1	-	ITIH4 antisense RNA 1	ncRNA
187187	chr5	140653301	140654100	+	0	NA	intron (NM_006083, intron 5 of 19)	AluSq|SINE|Alu	5856	NR_037428	100500820		NR_037428	ENSG00000284325	MIR3655	-	microRNA 3655	ncRNA
32323	chr10	102223651	102224230	+	0	NA	Intergenic	AluJb|SINE|Alu	-2359	NM_152310	83401		NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
233459	chr9	137667171	137667530	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	48345	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
103457	chr17	78315451	78316450	+	0	NA	Intergenic	Intergenic	-37458	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
27418	chr10	31404601	31404930	+	0	NA	intron (NM_001323664, intron 3 of 10)	intron (NM_001323664, intron 3 of 10)	-5010	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
60690	chr13	43874571	43875150	+	0	NA	5' UTR (NM_001350618, exon 2 of 5)	5' UTR (NM_001350618, exon 2 of 5)	-4318	NM_001128303	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
18024	chr1	160573351	160573900	+	0	NA	intron (NM_003874, intron 1 of 6)	L2a|LINE|L2	5871	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
6963	chr1	31768721	31769430	+	0	NA	Intergenic	MIRb|SINE|MIR	-4735	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
88079	chr16	81481351	81481800	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-13779	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
48807	chr12	12008951	12009800	+	0	NA	Intergenic	Intergenic	-40486	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
78506	chr15	92932271	92932430	+	0	NA	intron (NM_001042572, intron 5 of 12)	L1PA5|LINE|L1	27951	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
75523	chr15	66502401	66502600	+	0	NA	promoter-TSS (NR_002442)	promoter-TSS (NR_002442)	-409	NR_002442	595099		NR_002442	ENSG00000202529	SNORD18B	U18B	small nucleolar RNA, C/D box 18B	snoRNA
32475	chr10	102658971	102659580	+	0	NA	TTS (NM_001345950)	TTS (NM_001345950)	14780	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
219785	chr8	81153901	81154700	+	0	NA	Intergenic	Intergenic	-42232	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
194571	chr6	33414001	33414350	+	0	NA	intron (NM_024165, intron 8 of 14).2	intron (NM_024165, intron 8 of 14).2	3161	NM_002636	5252		NM_002636	ENSG00000112511	PHF1	MTF2L2|PCL1|PHF2|TDRD19C|hPHF1	PHD finger protein 1	protein-coding
34918	chr11	413321	414100	+	0	NA	intron (NM_021805, intron 1 of 9)	intron (NM_021805, intron 1 of 9)	1289	NM_001135054	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
73281	chr15	41856371	41856730	+	0	NA	exon (NM_016642, exon 53 of 68)	exon (NM_016642, exon 53 of 68)	10001	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
169712	chr3	172129901	172130900	+	0	NA	intron (NM_022763, intron 2 of 25)	intron (NM_022763, intron 2 of 25)	89869	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
59765	chr13	30142551	30143380	+	0	NA	Intergenic	Intergenic	10109	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
47401	chr12	2853521	2853880	+	0	NA	intron (NR_157835, intron 1 of 1)	intron (NR_157835, intron 1 of 1)	3339	NM_001365174	101929469		NM_001365174	ENSG00000283297	TEX52	-	testis expressed 52	protein-coding
47895	chr12	6744651	6745080	+	0	NA	Intergenic	Intergenic	8051	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
197775	chr6	87643871	87644030	+	0	NA	intron (NM_181837, intron 13 of 19)	MER2|DNA|TcMar-Tigger	53815	NM_012381	23595		NM_012381	ENSG00000135336	ORC3	LAT|LATHEO|ORC3L	origin recognition complex subunit 3	protein-coding
151902	chr22	18908271	18909030	+	0	NA	intron (NM_005675, intron 2 of 4)	L1MC4|LINE|L1	2330	NM_005675	8214		NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
61162	chr13	48994671	48994830	+	0	NA	intron (NM_001278438, intron 1 of 25)	AluSg|SINE|Alu	18088	NR_103528	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
134975	chr2	152403051	152403350	+	0	NA	intron (NM_052905, intron 1 of 25)	L1MC3|LINE|L1	68026	NM_052905	114793		NM_052905	ENSG00000157827	FMNL2	FHOD2	formin like 2	protein-coding
149190	chr21	23858721	23858980	+	0	NA	Intergenic	MER74A|LTR|ERVL	462527	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
163022	chr3	49801201	49801400	+	0	NA	Intergenic	L2|LINE|L2	-1427	NM_001007540	389118		NM_001007540	ENSG00000187492	CDHR4	CDH29|PRO34300	cadherin related family member 4	protein-coding
81051	chr16	4318371	4318830	+	0	NA	intron (NM_032575, intron 1 of 6).2	intron (NM_032575, intron 1 of 6).2	2533	NM_032575	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
174621	chr4	40301471	40302680	+	0	NA	Intergenic	Intergenic	-5110	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
85059	chr16	32039021	32039880	+	0	NA	Intergenic	Intergenic	148663	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
62566	chr13	99965571	99966850	+	0	NA	intron (NM_033132, intron 1 of 1)	intron (NM_033132, intron 1 of 1)	2962	NR_146225	85416		NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
59790	chr13	30306731	30307830	+	0	NA	promoter-TSS (NM_001014380)	promoter-TSS (NM_001014380)	-269	NM_001014380	84056		NM_032116	ENSG00000102781	KATNAL1	-	katanin catalytic subunit A1 like 1	protein-coding
200940	chr6	139165851	139165950	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	30820	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
108895	chr18	79419651	79419750	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	19401	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
119111	chr19	39337201	39337400	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-1257	NM_004877	9535		NM_004877	ENSG00000130755	GMFG	GMF-GAMMA	glia maturation factor gamma	protein-coding
47860	chr12	6631151	6632000	+	0	NA	promoter-TSS (NM_001142961)	promoter-TSS (NM_001142961)	74	NM_001142961	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
159191	chr3	12866951	12867250	+	0	NA	Intergenic	Intergenic	18111	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
151652	chr22	16917371	16917630	+	0	NA	Intergenic	Intergenic	90026	NR_003607	27437		NR_003607	ENSG00000290408	HSFY1P1	CECR8|HSFYL1|HSFYP1|NCRNA00016	HSFY1 pseudogene 1	pseudo
214797	chr7	151169321	151169950	+	0	NA	Intergenic	Intergenic	-2087	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
191744	chr6	13769071	13769330	+	0	NA	Intergenic	AluJb|SINE|Alu	45360	NM_001031713	63933		NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
36447	chr11	5684401	5685400	+	0	NA	5' UTR (NM_033034, exon 1 of 8)	5' UTR (NM_033034, exon 1 of 8)	174	NM_033034	85363		NM_033034	ENSG00000132256	TRIM5	RNF88|TRIM5alpha	tripartite motif containing 5	protein-coding
158203	chr22	50252001	50253130	+	0	NA	TTS (NM_002969)	TTS (NM_002969)	-1300	NM_001159286	83933		NM_032019	ENSG00000100429	HDAC10	HD10	histone deacetylase 10	protein-coding
231400	chr9	130938721	130938980	+	0	NA	5' UTR (NM_032843, exon 1 of 7)	5' UTR (NM_032843, exon 1 of 7)	218	NM_001145106	84929		NM_032843	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
155288	chr22	38107021	38107930	+	0	NA	intron (NM_025045, intron 4 of 13)	intron (NM_025045, intron 4 of 13)	3209	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
28117	chr10	43405621	43405880	+	0	NA	intron (NM_001098204, intron 1 of 3)	L1MC5a|LINE|L1	2101	NM_001098206	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
53470	chr12	66066051	66066580	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	-35249	NR_146530	105369810		NR_146530	ENSG00000256259	LINC02425	-	long intergenic non-protein coding RNA 2425	ncRNA
5073	chr1	24675021	24675630	+	0	NA	Intergenic	AluYa5|SINE|Alu	31746	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
195426	chr6	36946621	36946880	+	0	NA	Intergenic	Intergenic	-1513	NM_001199159	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
201593	chr6	149346071	149346630	+	0	NA	intron (NM_001369506, intron 2 of 7)	intron (NM_001369506, intron 2 of 7)	28050	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
144252	chr20	34522821	34523480	+	0	NA	intron (NR_168139, intron 2 of 4)	L2c|LINE|L2	6728	NM_001382367	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
167482	chr3	129157801	129158200	+	0	NA	intron (NM_001204890, intron 3 of 12)	AluSx1|SINE|Alu	3063	NM_020701	57461		NM_020701	ENSG00000240682	ISY1	FSAP33	ISY1 splicing factor homolog	protein-coding
41242	chr11	65783801	65784930	+	0	NA	Intergenic	L2b|LINE|L2	-2698	NM_004561	5017		NM_004561	ENSG00000172818	OVOL1	HOVO1	ovo like transcriptional repressor 1	protein-coding
171220	chr3	195769001	195769400	+	0	NA	intron (NM_018406, intron 6 of 24)	intron (NM_018406, intron 6 of 24)	42729	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
96184	chr17	39733851	39734280	+	0	NA	Intergenic	AluJb|SINE|Alu	-3502	NM_001330206	84299		NM_032339	ENSG00000141741	MIEN1	C17orf37|C35|ORB3|RDX12|XTP4	migration and invasion enhancer 1	protein-coding
138594	chr2	208072301	208072580	+	0	NA	Intergenic	Intergenic	-46689	NR_038437	100507443		NR_038437		LOC100507443	-	uncharacterized LOC100507443	ncRNA
123394	chr19	53923201	53923800	+	0	NA	intron (NM_001384801, intron 4 of 4)	intron (NM_001384801, intron 4 of 4)	14222	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
148083	chr20	63293901	63294530	+	0	NA	intron (NM_020882, intron 1 of 35)	intron (NM_020882, intron 1 of 35)	1029	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
100190	chr17	58693551	58693650	+	0	NA	intron (NM_058216, intron 1 of 8)	intron (NM_058216, intron 1 of 8)	998	NR_103872	5889		NM_002876	ENSG00000108384	RAD51C	BROVCA3|FANCO|R51H3|RAD51L2	RAD51 paralog C	protein-coding
12461	chr1	107830401	107830600	+	0	NA	intron (NM_006113, intron 2 of 26)	MER83C|LTR|ERV1	-66723	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
145008	chr20	37691871	37692230	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1905	NM_001281495	56259		NM_030877	ENSG00000132792	CTNNBL1	C20orf33|IMD99|NAP|P14L|PP8304|dJ633O20.1	catenin beta like 1	protein-coding
35688	chr11	1892671	1893030	+	0	NA	TTS (NM_002339)	TTS (NM_002339)	-3909	NR_120534	101927624		NR_120534		LINC01150	2G7|TCONS_00019134	long intergenic non-protein coding RNA 1150	ncRNA
189893	chr5	177338301	177338500	+	0	NA	intron (NM_006816, intron 3 of 7)	intron (NM_006816, intron 3 of 7)	13268	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
200696	chr6	137341901	137342350	+	0	NA	Intergenic	Intergenic	-122740	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
143732	chr20	32332221	32332480	+	0	NA	3' UTR (NM_004798, exon 9 of 9)	3' UTR (NM_004798, exon 9 of 9)	-25981	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
46130	chr11	123036951	123037250	+	0	NA	Intergenic	L1MA7|LINE|L1	19534	NR_027288	341056		NR_027288		SAE1P1	-	SAE1 pseudogene 1	pseudo
199678	chr6	122475971	122476460	+	0	NA	intron (NM_181794, intron 1 of 6)	intron (NM_181794, intron 1 of 6)	4298	NM_181794	5570		NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
221326	chr8	123072201	123074080	+	0	NA	promoter-TSS (NM_001363149)	promoter-TSS (NM_001363149)	-109	NM_001363149	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
235131	chrX	40952851	40953150	+	0	NA	Intergenic	Intergenic	-119804	NR_027761	100132831		NR_027761		TNIP2P1	-	TNIP2 pseudogene 1	pseudo
23015	chr1	226196771	226197390	+	0	NA	Intergenic	Intergenic	-10339	NM_022735	64746		NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
180085	chr5	1113501	1113730	+	0	NA	Intergenic	Intergenic	-1552	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
190546	chr5	180784421	180784900	+	0	NA	TTS (NM_002406)	TTS (NM_002406)	18146	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
40793	chr11	64896201	64896930	+	0	NA	exon (NM_001367972, exon 39 of 41)	exon (NM_001367972, exon 39 of 41)	1872	NR_106808	102466192		NR_106808	ENSG00000274986	MIR6750	hsa-mir-6750	microRNA 6750	ncRNA
215366	chr7	157396421	157396680	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	59546	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
216834	chr8	22588851	22589600	+	0	NA	intron (NM_198042, intron 5 of 7)	intron (NM_198042, intron 5 of 7)	8750	NM_001368120	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
191643	chr6	13335171	13335330	+	0	NA	Intergenic	Intergenic	-6667	NM_001143964	51256		NM_016495	ENSG00000145979	TBC1D7	MGCPH|PIG51|TBC7	TBC1 domain family member 7	protein-coding
54159	chr12	76665771	76666130	+	0	NA	Intergenic	Intergenic	-98165	NM_015336	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
182383	chr5	61163521	61163850	+	0	NA	intron (NR_109908, intron 1 of 3)	intron (NR_109908, intron 1 of 3)	-1217	NM_001048249	643155		NM_001048249	ENSG00000188725	SMIM15	C5orf43	small integral membrane protein 15	protein-coding
124725	chr2	4147921	4148000	+	0	NA	Intergenic	AluYb8|SINE|Alu	173799	NR_136322	105373394		NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
12800	chr1	109797671	109798200	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-34012	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
72612	chr15	37101111	37102150	+	0	NA	promoter-TSS (NM_001220482)	promoter-TSS (NM_001220482)	-319	NM_001220482	4212		NM_002399	ENSG00000134138	MEIS2	CPCMR|HsT18361|MRG1	Meis homeobox 2	protein-coding
141013	chr2	238162671	238163230	+	0	NA	intron (NM_001291832, intron 3 of 7)	intron (NM_001291832, intron 3 of 7)	3980	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
175651	chr4	76688801	76689000	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	113349	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
180804	chr5	32311551	32311650	+	0	NA	intron (NM_001294344, intron 1 of 13)	intron (NM_001294344, intron 1 of 13)	1339	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
3689	chr1	16512911	16513100	+	0	NA	Intergenic	Intergenic	1280	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
96685	chr17	41307771	41309260	+	0	NA	exon (NM_001146182, exon 1 of 1)	exon (NM_001146182, exon 1 of 1)	738	NM_001146182	100505753		NM_001146182	ENSG00000212657	KRTAP16-1	KAP16.1	keratin associated protein 16-1	protein-coding
169559	chr3	170258621	170259030	+	0	NA	intron (NM_002740, intron 2 of 17)	intron (NM_002740, intron 2 of 17)	36401	NM_002740	5584		NM_002740	ENSG00000163558	PRKCI	DXS1179E|PKCI|nPKC-iota	protein kinase C iota	protein-coding
17063	chr1	156105871	156107880	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	-7836	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
29008	chr10	63514851	63514950	+	0	NA	intron (NM_001322258, intron 1 of 24)	L1MC1|LINE|L1	-6501	NM_001001330	221035		NM_001001330	ENSG00000165476	REEP3	C10orf74|Yip2b	receptor accessory protein 3	protein-coding
234794	chrX	24015671	24015830	+	0	NA	intron (NM_030624, intron 2 of 3)	AluSq|SINE|Alu	11436	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
148761	chr21	8152401	8152600	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	-45120	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
94053	chr17	27352321	27352900	+	0	NA	Intergenic	Intergenic	58496	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
78352	chr15	91291671	91291900	+	0	NA	intron (NM_001167580, intron 11 of 11)	MLT1J|LTR|ERVL-MaLR	-171554	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
196903	chr6	52333721	52335080	+	0	NA	Intergenic	Intergenic	-27751	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
158491	chr3	262171	262330	+	0	NA	intron (NM_006614, intron 2 of 27)	intron (NM_006614, intron 2 of 27)	-57433	NM_001253388	10752		NM_006614	ENSG00000134121	CHL1	CALL|L1CAM2	cell adhesion molecule L1 like	protein-coding
118411	chr19	35756621	35756980	+	0	NA	intron (NM_144617, intron 1 of 2)	CpG-14301	229	NM_144617	126393		NM_144617	ENSG00000004776	HSPB6	HEL55|Hsp20|PPP1R91	heat shock protein family B (small) member 6	protein-coding
163208	chr3	50239901	50240250	+	0	NA	intron (NM_001282618, intron 1 of 7)	L2b|LINE|L2	3871	NM_001282618	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
12295	chr1	100866401	100866680	+	0	NA	Intergenic	Intergenic	28302	NM_001033025	2135		NM_001439	ENSG00000162694	EXTL2	EXTR2	exostosin like glycosyltransferase 2	protein-coding
66092	chr14	59480851	59481430	+	0	NA	intron (NM_144581, intron 1 of 4)	MIR3|SINE|MIR	2435	NM_001331159	112849		NM_144581	ENSG00000126790	L3HYPDH	C14orf149	trans-L-3-hydroxyproline dehydratase	protein-coding
122858	chr19	50482201	50482830	+	0	NA	3' UTR (NM_175063, exon 8 of 8)	3' UTR (NM_175063, exon 8 of 8)	-5667	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
227040	chr9	83965821	83966480	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	3707	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
142683	chr20	6142501	6142730	+	0	NA	Intergenic	Intergenic	-19585	NM_017671	55612		NM_017671	ENSG00000101311	FERMT1	C20orf42|DTGCU2|KIND1|UNC112A|URP1	FERM domain containing kindlin 1	protein-coding
236496	chrX	71720321	71720850	+	0	NA	Intergenic	Intergenic	-2300	NM_001145140	100130361		NM_001145140	ENSG00000215115	CXorf49	CXorf49B	chromosome X open reading frame 49	protein-coding
175901	chr4	80138721	80139400	+	0	NA	Intergenic	Intergenic	-46210	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
79300	chr16	546421	547930	+	0	NA	exon (NM_005632, exon 4 of 14)	exon (NM_005632, exon 4 of 14)	3898	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
228525	chr9	100429821	100430250	+	0	NA	intron (NM_001198806, intron 1 of 2)	intron (NM_001198806, intron 1 of 2)	521	NM_001198806	91283		NM_080655	ENSG00000066697	MSANTD3	C9orf30|L8	Myb/SANT DNA binding domain containing 3	protein-coding
233325	chr9	137432551	137433380	+	0	NA	intron (NM_001256068, intron 6 of 11)	intron (NM_001256068, intron 6 of 11)	8392	NM_198585	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
148490	chr20	64061021	64061550	+	0	NA	intron (NM_198723, intron 1 of 10)	AluY|SINE|Alu	-1913	NM_003195	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
86632	chr16	67436821	67437430	+	0	NA	TTS (NM_004691)	TTS (NM_004691)	6004	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
87907	chr16	78989621	78989930	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	610962	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
158760	chr3	9391121	9391800	+	0	NA	intron (NR_132781, intron 1 of 3)	AluSz|SINE|Alu	5163	NR_132781	440944		NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
15343	chr1	149925201	149925400	+	0	NA	intron (NM_005850, intron 4 of 5)	L2c|LINE|L2	2503	NM_005850	10262		NM_005850	ENSG00000143368	SF3B4	AFD1|Hsh49|SAP49|SF3b49	splicing factor 3b subunit 4	protein-coding
67448	chr14	70782471	70782630	+	0	NA	intron (NM_001284231, intron 1 of 11)	intron (NM_001284231, intron 1 of 11)	902	NM_001284232	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
196653	chr6	44304651	44305800	+	0	NA	intron (NM_020745, intron 10 of 21)	intron (NM_020745, intron 10 of 21)	-7527	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
111481	chr19	3956521	3957330	+	0	NA	Intergenic	AluY|SINE|Alu	4587	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
12260	chr1	100451251	100451550	+	0	NA	intron (NM_001319212, intron 7 of 13)	intron (NM_001319212, intron 7 of 13)	-86739	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
13974	chr1	120552521	120552830	+	0	NA	intron (NR_144516, intron 8 of 43)	L2a|LINE|L2	-6010	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
83929	chr16	29076251	29076700	+	0	NA	intron (NR_003369, intron 1 of 16)	L2a|LINE|L2	1633	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
183910	chr5	87388001	87388430	+	0	NA	intron (NM_022650, intron 23 of 24)	intron (NM_022650, intron 23 of 24)	24689	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
142784	chr20	13221201	13222480	+	0	NA	exon (NM_080826, exon 1 of 6)	exon (NM_080826, exon 1 of 6)	566	NM_080826	140862		NM_080826	ENSG00000101230	ISM1	C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1	isthmin 1	protein-coding
160877	chr3	33447371	33447630	+	0	NA	Intergenic	HERV9NC-int|LTR|ERV1	-7095	NM_014517	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
115863	chr19	16555771	16555930	+	0	NA	intron (NM_024881, intron 4 of 5)	intron (NM_024881, intron 4 of 5)	-13413	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
41035	chr11	65450301	65450530	+	0	NA	Intergenic	(TCCCTC)n|Simple_repeat|Simple_repeat	-4871	NR_160548	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
234693	chrX	20412721	20413750	+	0	NA	Intergenic	Intergenic	-146326	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
121823	chr19	47949051	47949350	+	0	NA	Intergenic	AluSp|SINE|Alu	-1096	NR_024221	100170226		NR_024221		SNAR-C3	-	small NF90 (ILF3) associated RNA C3	snRNA
106839	chr18	24024201	24024800	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-9040	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
53271	chr12	63814451	63815200	+	0	NA	intron (NR_126167, intron 2 of 3)	intron (NR_126167, intron 2 of 3)	7331	NR_126167	104169670		NR_126167	ENSG00000255850	RXYLT1-AS1	TMEM5-AS1	RXYLT1 antisense RNA 1	ncRNA
42003	chr11	67398571	67399550	+	0	NA	TTS (NM_001243224)	TTS (NM_001243224)	2798	NM_001008709	5499		NM_002708	ENSG00000172531	PPP1CA	PP-1A|PP1A|PP1alpha|PPP1A	protein phosphatase 1 catalytic subunit alpha	protein-coding
236837	chrX	79235901	79236200	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	91362	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
90953	chr17	2659521	2660180	+	0	NA	intron (NM_000430, intron 2 of 10)	intron (NM_000430, intron 2 of 10)	33069	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
9422	chr1	47997321	47997800	+	0	NA	promoter-TSS (NM_001194986)	promoter-TSS (NM_001194986)	-175	NM_001194986	388630		NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
145222	chr20	38913751	38914150	+	0	NA	intron (NM_001172735, intron 9 of 9)	AluSx1|SINE|Alu	-12467	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
194456	chr6	33176401	33176600	+	0	NA	intron (NM_080680, intron 26 of 65).6	intron (NM_080680, intron 26 of 65).6	15967	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
191175	chr6	5003251	5004680	+	0	NA	promoter-TSS (NM_001286132)	promoter-TSS (NM_001286132)	72	NM_006638	10799		NM_006638	ENSG00000124787	RPP40	RNASEP1|bA428J1.3	ribonuclease P/MRP subunit p40	protein-coding
151587	chr21	46641621	46641880	+	0	NA	intron (NM_206962, intron 3 of 11)	intron (NM_206962, intron 3 of 11)	6076	NM_001242866	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
209706	chr7	85186851	85187030	+	0	NA	5' UTR (NM_001384900, exon 1 of 19)	5' UTR (NM_001384900, exon 1 of 19)	116	NM_152754	223117		NM_152754	ENSG00000153993	SEMA3D	Sema-Z2|coll-2	semaphorin 3D	protein-coding
52567	chr12	56161751	56163030	+	0	NA	TTS (NM_001330288)	TTS (NM_001330288)	4031	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
174777	chr4	47838571	47838730	+	0	NA	promoter-TSS (NM_001278586)	promoter-TSS (NM_001278586)	-544	NM_001278585	10699		NM_006587	ENSG00000145244	CORIN	ATC2|CMH30|CRN|Lrp4|PEE5|TMPRSS10	corin, serine peptidase	protein-coding
47200	chr12	817601	817800	+	0	NA	intron (NM_018979, intron 2 of 27)	AluSx1|SINE|Alu	64777	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
156642	chr22	41625051	41625550	+	0	NA	intron (NM_001288978, intron 2 of 11)	intron (NM_001288978, intron 2 of 11)	4005	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
196754	chr6	45430551	45430850	+	0	NA	intron (NM_001278478, intron 1 of 5)	intron (NM_001278478, intron 1 of 5)	8425	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
28777	chr10	62052601	62052900	+	0	NA	intron (NM_001244638, intron 2 of 6)	intron (NM_001244638, intron 2 of 6)	3393	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
125755	chr2	21043101	21043680	+	0	NA	intron (NM_000384, intron 2 of 28)	intron (NM_000384, intron 2 of 28)	683	NM_000384	338		NM_000384	ENSG00000084674	APOB	FCHL2|FLDB|LDLCQ4|apoB-100|apoB-48	apolipoprotein B	protein-coding
73480	chr15	43648751	43649350	+	0	NA	promoter-TSS (NR_110319)	promoter-TSS (NR_110319)	-166	NM_001282310	117155		NM_054020	ENSG00000166762	CATSPER2	-	cation channel sperm associated 2	protein-coding
118597	chr19	36572741	36574150	+	0	NA	promoter-TSS (NM_001321351)	promoter-TSS (NM_001321351)	-153	NM_001321351	57711		NM_020951	ENSG00000186020	ZNF529	-	zinc finger protein 529	protein-coding
158517	chr3	3149501	3149700	+	0	NA	TTS (NM_001367323)	TTS (NM_001367323)	22660	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
152135	chr22	19971451	19972800	+	0	NA	intron (NM_001670, intron 17 of 19)	intron (NM_001670, intron 17 of 19)	8372	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
10338	chr1	64914471	64914830	+	0	NA	intron (NM_001321852, intron 1 of 24)	AluSz|SINE|Alu	51899	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
197144	chr6	59534371	59534530	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1573004	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
129832	chr2	72794101	72794300	+	0	NA	intron (NR_135773, intron 1 of 21)	Helitron3Na_Mam|RC|Helitron	31833	NM_001321730	23233		NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2|SEMDJL3	exocyst complex component 6B	protein-coding
164379	chr3	58237121	58238680	+	0	NA	5' UTR (NM_001320126, exon 1 of 10)	5' UTR (NM_001320126, exon 1 of 10)	108	NM_001320126	57406		NM_020676	ENSG00000163686	ABHD6	-	abhydrolase domain containing 6, acylglycerol lipase	protein-coding
583	chr1	1283421	1284230	+	0	NA	intron (NM_001130413, intron 4 of 17)	intron (NM_001130413, intron 4 of 17)	3389	NM_001130413	6339		NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	sodium channel epithelial 1 subunit delta	protein-coding
25757	chr10	10651351	10651450	+	0	NA	intron (NM_001326320, intron 1 of 16)	L1PA2|LINE|L1	143514	NR_027082	207107		NR_027082	ENSG00000225383	SFTA1P	SFTPF	surfactant associated 1, lncRNA	pseudo
33597	chr10	119526771	119527330	+	0	NA	intron (NM_002925, intron 2 of 4)	intron (NM_002925, intron 2 of 4)	9483	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
60164	chr13	40146601	40147180	+	0	NA	Intergenic	Intergenic	-34919	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
207891	chr7	50405371	50406050	+	0	NA	TTS (NM_001291842)	TTS (NM_001291842)	44640	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
153967	chr22	30363451	30363550	+	0	NA	intron (NM_001017437, intron 2 of 11)	MIRb|SINE|MIR	-6606	NM_005877	10291		NM_005877	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	splicing factor 3a subunit 1	protein-coding
172740	chr4	2833501	2833700	+	0	NA	intron (NM_001145856, intron 12 of 12)	intron (NM_001145856, intron 12 of 12)	-10244	NM_001354759	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
188717	chr5	157324151	157324600	+	0	NA	intron (NM_014376, intron 16 of 30)	intron (NM_014376, intron 16 of 30)	21302	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
164073	chr3	53893921	53894180	+	0	NA	Intergenic	Intergenic	-2191	NM_021237	58515		NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
147036	chr20	53621251	53622080	+	0	NA	intron (NR_134576, intron 2 of 2)	intron (NR_134576, intron 2 of 2)	13311	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
87336	chr16	70298821	70300180	+	0	NA	intron (NM_001257175, intron 1 of 8)	intron (NM_001257175, intron 1 of 8)	314	NM_007242	11269		NM_007242	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD-box helicase 19B	protein-coding
224179	chr9	5336151	5337050	+	0	NA	intron (NM_006911, intron 1 of 1)	intron (NM_006911, intron 1 of 1)	3276	NM_006911	6013		NM_006911	ENSG00000107018	RLN1	H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2	relaxin 1	protein-coding
165475	chr3	99421221	99421300	+	0	NA	Intergenic	Intergenic	-217334	NM_001850	1295		NM_001850	ENSG00000144810	COL8A1	C3orf7	collagen type VIII alpha 1 chain	protein-coding
80541	chr16	2780921	2781780	+	0	NA	Intergenic	Intergenic	-4070	NM_007108	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
30226	chr10	74949601	74949800	+	0	NA	intron (NM_012330, intron 3 of 17).2	intron (NM_012330, intron 3 of 17).2	36914	NR_134476								
151806	chr22	18207771	18208330	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-2141	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
42669	chr11	72585551	72586550	+	0	NA	intron (NM_001243784, intron 14 of 30)	intron (NM_001243784, intron 14 of 30)	15394	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
93678	chr17	19290171	19290330	+	0	NA	intron (NM_014964, intron 4 of 10)	MIRc|SINE|MIR	16011	NR_048576	100874018		NR_048576	ENSG00000235397	EPN2-AS1	-	EPN2 antisense RNA 1	ncRNA
70416	chr14	102020021	102021150	+	0	NA	intron (NM_001376, intron 42 of 77)	intron (NM_001376, intron 42 of 77)	56012	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
181787	chr5	50848121	50848400	+	0	NA	Intergenic	Intergenic	121927	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
150139	chr21	38219151	38219330	+	0	NA	Intergenic	Intergenic	-10686	NM_001276439	3772		NM_002243	ENSG00000157551	KCNJ15	IRKK|KIR1.3|KIR4.2	potassium inwardly rectifying channel subfamily J member 15	protein-coding
63045	chr13	113004971	113006030	+	0	NA	intron (NM_001320815, intron 1 of 30)	intron (NM_001320815, intron 1 of 30)	3786	NM_001320815	23263		NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
98731	chr17	48023071	48023600	+	0	NA	Intergenic	Intergenic	-9547	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
106765	chr18	23622101	23622600	+	0	NA	intron (NM_173505, intron 6 of 9)	intron (NM_173505, intron 6 of 9)	-35844	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
56310	chr12	112425971	112426500	+	0	NA	intron (NM_002834, intron 1 of 15)	intron (NM_002834, intron 1 of 15)	7288	NM_001330437	5781		NM_002834	ENSG00000179295	PTPN11	BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2	protein tyrosine phosphatase non-receptor type 11	protein-coding
145197	chr20	38888671	38889050	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-37557	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
48267	chr12	8648601	8649030	+	0	NA	intron (NR_123733, intron 9 of 10)	intron (NR_123733, intron 9 of 10)	14011	NM_003480	8076		NM_003480	ENSG00000197614	MFAP5	AAT9|MAGP-2|MAGP2|MFAP-5|MP25	microfibril associated protein 5	protein-coding
2625	chr1	10190601	10190800	+	0	NA	Intergenic	AluSc|SINE|Alu	-19870	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
210920	chr7	101222251	101222750	+	0	NA	intron (NM_006349, intron 1 of 4)	intron (NM_006349, intron 1 of 4)	4335	NM_006349	10467		NM_006349	ENSG00000106400	ZNHIT1	CG1I|ZNFN4A1|p18(Hamlet)	zinc finger HIT-type containing 1	protein-coding
188560	chr5	157026651	157027430	+	0	NA	Intergenic	Intergenic	31201	NM_012206	26762		NM_012206	ENSG00000113249	HAVCR1	CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
34848	chr11	321851	321950	+	0	NA	Intergenic	LTR76|LTR|ERV1	-1040	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
181619	chr5	44808621	44809910	+	0	NA	promoter-TSS (NR_109862)	promoter-TSS (NR_109862)	318	NM_016640	10884		NM_016640	ENSG00000112996	MRPS30	MRP-S30|PAP|PDCD9|S30mt|mL65	mitochondrial ribosomal protein S30	protein-coding
27385	chr10	31101121	31101380	+	0	NA	Intergenic	Intergenic	-69313	NM_001143766	220929		NM_182755	ENSG00000183621	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
40244	chr11	63621151	63621480	+	0	NA	Intergenic	Intergenic	-6846	NM_001128203	11145		NM_007069	ENSG00000176485	PLAAT3	AdPLA|FPLD9|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3	phospholipase A and acyltransferase 3	protein-coding
88995	chr16	87949371	87949730	+	0	NA	promoter-TSS (NM_001384922)	promoter-TSS (NM_001384922)	312	NM_001384936	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
4208	chr1	19454121	19454580	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	29945	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
93367	chr17	18240621	18241230	+	0	NA	intron (NM_004140, intron 17 of 22)	intron (NM_004140, intron 17 of 22)	15290	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
81763	chr16	11500051	11500150	+	0	NA	intron (NM_001370704, intron 10 of 66)	MIRb|SINE|MIR	27147	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
188689	chr5	157283071	157283900	+	0	NA	intron (NM_014376, intron 1 of 30)	intron (NM_014376, intron 1 of 30)	14161	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
13627	chr1	116417101	116417450	+	0	NA	intron (NR_024126, intron 1 of 2)	AluJb|SINE|Alu	1284	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
32572	chr10	103447421	103447680	+	0	NA	exon (NM_015916, exon 4 of 4)	exon (NM_015916, exon 4 of 4)	4820	NR_046344	51063		NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator family member 2	protein-coding
68147	chr14	75549001	75549550	+	0	NA	Intergenic	Intergenic	26806	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
228847	chr9	112282901	112283100	+	0	NA	intron (NM_001375918, intron 2 of 13)	THE1D|LTR|ERVL-MaLR	50026	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
167726	chr3	131024601	131025200	+	0	NA	exon (NM_014065, exon 3 of 6)	exon (NM_014065, exon 3 of 6)	1925	NM_014065	28990		NM_014065	ENSG00000034533	ASTE1	HT001	asteroid homolog 1	protein-coding
31176	chr10	91184951	91185330	+	0	NA	intron (NM_001257101, intron 1 of 9)	L1PA13|LINE|L1	22128	NM_001257101	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
175378	chr4	70690351	70690450	+	0	NA	3' UTR (NM_020368, exon 1 of 1)	3' UTR (NM_020368, exon 1 of 1)	1868	NM_020368	57050		NM_020368	ENSG00000132467	UTP3	CRL1|CRLZ1|SAS10	UTP3 small subunit processome component	protein-coding
71909	chr15	22759601	22759800	+	0	NA	intron (NR_040057, intron 2 of 4)	MER103C|DNA|hAT-Charlie	1843	NR_040057	283683		NR_040057	ENSG00000274253	LOC283683	-	uncharacterized LOC283683	ncRNA
236468	chrX	71605101	71605500	+	0	NA	intron (NM_052957, intron 8 of 12)	intron (NM_052957, intron 8 of 12)	13211	NM_001142797	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
20321	chr1	197526871	197527300	+	0	NA	intron (NR_125340, intron 17 of 19)	intron (NR_125340, intron 17 of 19)	248395	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
49011	chr12	14238121	14238700	+	0	NA	Intergenic	Intergenic	-127222	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
75901	chr15	70016151	70016650	+	0	NA	Intergenic	Intergenic	63068	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
195782	chr6	40585551	40585650	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	1764	NM_020737	57497		NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
34141	chr10	128051051	128051150	+	0	NA	intron (NM_001323357, intron 3 of 16)	intron (NM_001323357, intron 3 of 16)	3488	NM_001323357	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
165562	chr3	101514971	101515130	+	0	NA	Intergenic	AluJo|SINE|Alu	-1809	NM_001282804	57337		NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
17609	chr1	156908371	156908930	+	0	NA	intron (NM_001080471, intron 9 of 22)	(CTGCCC)n|Simple_repeat|Simple_repeat	-11982	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
26023	chr10	12344021	12344280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5397	NM_020397	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
88960	chr16	87852421	87852880	+	0	NA	intron (NM_003486, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	-1246	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
192224	chr6	18262801	18263700	+	0	NA	intron (NM_003472, intron 2 of 10)	intron (NM_003472, intron 2 of 10)	1280	NM_003472	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
75372	chr15	65632671	65632830	+	0	NA	intron (NM_001301032, intron 1 of 7)	L2c|LINE|L2	8795	NM_001301031	9187		NM_004727	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 member 1	protein-coding
64405	chr14	24173001	24173800	+	0	NA	exon (NM_005132, exon 6 of 20)	exon (NM_005132, exon 6 of 20)	1320	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
204522	chr7	4799271	4799430	+	0	NA	3' UTR (NM_018059, exon 15 of 15)	3' UTR (NM_018059, exon 15 of 15)	-10711	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
64891	chr14	35390051	35390350	+	0	NA	Intergenic	AluSx|SINE|Alu	14549	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
42871	chr11	73310301	73310900	+	0	NA	exon (NM_014786, exon 1 of 21)	exon (NM_014786, exon 1 of 21)	-1239	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
234288	chrX	13662571	13662730	+	0	NA	exon (NM_001297563, exon 5 of 5)	exon (NM_001297563, exon 5 of 5)	9509	NM_001297563	170082		NM_152634	ENSG00000176896	TCEANC	TCEANC1	transcription elongation factor A N-terminal and central domain containing	protein-coding
164346	chr3	58019701	58020300	+	0	NA	intron (NM_001164319, intron 1 of 44)	intron (NM_001164319, intron 1 of 44)	11578	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
153355	chr22	24423651	24424430	+	0	NA	intron (NM_001278500, intron 1 of 2)	CpG	443	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
38897	chr11	47411351	47411450	+	0	NA	intron (NM_001330245, intron 2 of 9)	AluSx|SINE|Alu	2810	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
6951	chr1	31755751	31756050	+	0	NA	intron (NM_001294336, intron 4 of 31)	intron (NM_001294336, intron 4 of 31)	2835	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
205719	chr7	23470871	23471580	+	0	NA	promoter-TSS (NM_006547)	promoter-TSS (NM_006547)	-734	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
68349	chr14	77653571	77653730	+	0	NA	Intergenic	Intergenic	-37013	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
135717	chr2	169107071	169108530	+	0	NA	Intergenic	Intergenic	26693	NM_001142271	10170		NM_005771	ENSG00000073737	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4|hRoDH-E2	dehydrogenase/reductase 9	protein-coding
3078	chr1	12186851	12187150	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	-4713	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
122677	chr19	49881201	49881730	+	0	NA	exon (NM_001168222, exon 4 of 16)	exon (NM_001168222, exon 4 of 16)	-3109	NM_001278160	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
77984	chr15	89416421	89417300	+	0	NA	intron (NR_160724, intron 2 of 2)	intron (NR_160724, intron 2 of 2)	16689	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
62581	chr13	99987751	99988130	+	0	NA	Intergenic	Intergenic	6156	NM_007129	7546		NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
93169	chr17	17789771	17790330	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	-10521	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
184833	chr5	111337201	111337800	+	0	NA	intron (NM_001744, intron 1 of 10)	L1ME1|LINE|L1	113116	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
64198	chr14	23020971	23021330	+	0	NA	Intergenic	Intergenic	-11007	NM_001282968	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
42178	chr11	67920451	67921150	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	83297	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
186697	chr5	138726901	138727200	+	0	NA	Intergenic	Intergenic	26259	NR_134245	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
162526	chr3	48596771	48597350	+	0	NA	Intergenic	Intergenic	-1731	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
73266	chr15	41832751	41833380	+	0	NA	intron (NM_005090, intron 1 of 24)	L2a|LINE|L2	4973	NM_001114632	100137047		NM_001114632	ENSG00000243789	JMJD7	-	jumonji domain containing 7	protein-coding
11684	chr1	91840151	91840450	+	0	NA	intron (NR_036634, intron 2 of 17)	AluSx|SINE|Alu	45851	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
228341	chr9	98974801	98975550	+	0	NA	intron (NM_001855, intron 2 of 41)	intron (NM_001855, intron 2 of 41)	31268	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
233541	chrX	247971	248130	+	0	NA	Intergenic	Intergenic	-28306	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
116948	chr19	18853271	18853680	+	0	NA	intron (NM_001297549, intron 8 of 23)	intron (NM_001297549, intron 8 of 23)	21516	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
50643	chr12	48719951	48720250	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-3393	NM_001277842	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
202342	chr6	157550121	157551150	+	0	NA	intron (NM_024630, intron 2 of 8)	intron (NM_024630, intron 2 of 8)	21503	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
216198	chr8	11853621	11854750	+	0	NA	intron (NM_001908, intron 1 of 9)	intron (NM_001908, intron 1 of 9)	13902	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
187135	chr5	140463451	140463550	+	0	NA	intron (NM_001197030, intron 9 of 9)	L1MC5|LINE|L1	61667	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
135560	chr2	165328221	165328480	+	0	NA	intron (NM_001371246, intron 13 of 26)	intron (NM_001371246, intron 13 of 26)	34295	NM_021007	6326		NM_021007	ENSG00000136531	SCN2A	BFIC3|BFIS3|BFNIS|DEE11|EA9|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2	sodium voltage-gated channel alpha subunit 2	protein-coding
220171	chr8	95133051	95135080	+	0	NA	intron (NM_024613, intron 1 of 1)	CpG	280	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
177540	chr4	118865171	118865430	+	0	NA	intron (NM_001286754, intron 1 of 4)	LTR50|LTR|ERVL	14619	NM_001286754	171024		NM_133477	ENSG00000172403	SYNPO2	SYISL	synaptopodin 2	protein-coding
5147	chr1	24905851	24906830	+	0	NA	intron (NM_001031680, intron 5 of 5)	intron (NM_001031680, intron 5 of 5)	13076	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
142298	chr20	3248521	3249080	+	0	NA	TTS (NM_001009984)	TTS (NM_001009984)	-9610	NR_135000	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
66322	chr14	61420121	61421180	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	99207	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
160908	chr3	33993121	33993200	+	0	NA	Intergenic	Intergenic	194530	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
219737	chr8	81062751	81063430	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	48978	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
137399	chr2	196239771	196240630	+	0	NA	intron (NM_001348768, intron 21 of 28)	intron (NM_001348768, intron 21 of 28)	-19824	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
207397	chr7	44218251	44218750	+	0	NA	3' UTR (NM_001220, exon 24 of 24)	3' UTR (NM_001220, exon 24 of 24)	17522	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
25277	chr10	6141901	6143050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2446	NR_136554	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
179153	chr4	169664601	169665400	+	0	NA	intron (NM_001243374, intron 1 of 11)	intron (NM_001243374, intron 1 of 11)	4938	NM_001243374	1182		NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3|NEDHYBA|NEDSBA	chloride voltage-gated channel 3	protein-coding
16080	chr1	153522171	153522780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	13516	NM_014624	6277		NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA|S10A6	S100 calcium binding protein A6	protein-coding
154131	chr22	31210721	31211280	+	0	NA	Intergenic	Intergenic	-1298	NM_005569	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
124968	chr2	8797021	8797280	+	0	NA	intron (NR_145965, intron 10 of 29)	intron (NR_145965, intron 10 of 29)	40463	NM_001348740	57498		NM_020738	ENSG00000134313	KIDINS220	ARMS|SINO|VENARG	kinase D interacting substrate 220	protein-coding
144130	chr20	34008471	34008900	+	0	NA	intron (NM_016732, intron 1 of 9)	AluJr|SINE|Alu	-14318	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
2677	chr1	10527521	10528180	+	0	NA	intron (NM_004565, intron 2 of 8)	AluSz6|SINE|Alu	52900	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
12486	chr1	107942821	107943080	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-21493	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
135689	chr2	168759021	168759480	+	0	NA	intron (NM_203463, intron 8 of 9)	intron (NM_203463, intron 8 of 9)	27179	NR_045786	100861402		NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
205687	chr7	23187651	23187750	+	0	NA	intron (NM_007342, intron 3 of 6)	AluSq2|SINE|Alu	5652	NM_001370444	11097		NM_007342	ENSG00000136243	NUP42	CG1|NLP-1|NLP1|NLP_1|NUPL2|UIP1|hCG1	nucleoporin 42	protein-coding
119105	chr19	39327101	39327430	+	0	NA	Intergenic	Intergenic	-6402	NM_020862	57622		NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
55638	chr12	107095271	107095830	+	0	NA	Intergenic	Intergenic	-2001	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
180210	chr5	1509671	1510030	+	0	NA	TTS (NR_106723)	TTS (NR_106723)	1006	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
29173	chr10	68897371	68897950	+	0	NA	Intergenic	Intergenic	-3655	NM_024045	79009		NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
97693	chr17	44313051	44313600	+	0	NA	intron (NM_001144825, intron 3 of 10)	intron (NM_001144825, intron 3 of 10)	4724	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
160658	chr3	31695501	31695930	+	0	NA	intron (NM_001174060, intron 6 of 10)	L2a|LINE|L2	-8498	NR_049771	100874206		NR_049771	ENSG00000232490	OSBPL10-AS1	-	OSBPL10 antisense RNA 1	ncRNA
178025	chr4	139453031	139454900	+	0	NA	promoter-TSS (NM_031296)	promoter-TSS (NM_031296)	76	NR_159964	107984036		NR_159963		RAB33B-AS1	-	RAB33B antisense RNA 1	ncRNA
49640	chr12	28248321	28249180	+	0	NA	intron (NM_001352086, intron 3 of 15)	L2|LINE|L2	-58012	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
17470	chr1	156712001	156712750	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	-6559	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
116660	chr19	18372571	18372930	+	0	NA	Intergenic	Intergenic	-13408	NM_004864	9518		NM_004864	ENSG00000130513	GDF15	GDF-15|HG|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB	growth differentiation factor 15	protein-coding
236331	chrX	69285851	69286250	+	0	NA	Intergenic	Intergenic	106493	NR_103715	100996279		NR_103715	ENSG00000215162	LINC00269	CXorf62|NCRNA00269	long intergenic non-protein coding RNA 269	ncRNA
121241	chr19	46657921	46658180	+	0	NA	intron (NM_145056, intron 1 of 3)	AluSz|SINE|Alu	-2314	NR_040042	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
137093	chr2	190945371	190945730	+	0	NA	intron (NM_014905, intron 14 of 17)	AluJb|SINE|Alu	64729	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
35332	chr11	1080871	1081030	+	0	NA	intron (NM_002457, intron 6 of 60)	intron (NM_002457, intron 6 of 60)	6075	NM_002457	4583		NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
53751	chr12	68657471	68657950	+	0	NA	intron (NM_001251921, intron 6 of 6)	intron (NM_001251921, intron 6 of 6)	29149	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
216166	chr8	11709171	11709730	+	0	NA	intron (NM_002052, intron 2 of 6)	CpG-26999	4088	NR_132779	106635531		NR_132779		SNORA99	-	small nucleolar RNA, H/ACA box 99	snoRNA
45767	chr11	119258101	119258600	+	0	NA	intron (NM_005188, intron 2 of 15)	MSTA|LTR|ERVL-MaLR	52011	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
95231	chr17	35285901	35286800	+	0	NA	Intergenic	MER57C2|LTR|ERV1	43278	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
91239	chr17	3943551	3944080	+	0	NA	intron (NM_174953, intron 10 of 22)	intron (NM_174953, intron 10 of 22)	20622	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
30703	chr10	80537821	80538530	+	0	NA	5' UTR (NM_207372, exon 1 of 7)	5' UTR (NM_207372, exon 1 of 7)	273	NM_207372	387694		NM_207372	ENSG00000178217	SH2D4B	-	SH2 domain containing 4B	protein-coding
160371	chr3	27901751	27902130	+	0	NA	Intergenic	Intergenic	-67804	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
71136	chr14	104977951	104979130	+	0	NA	promoter-TSS (NM_138420)	promoter-TSS (NM_138420)	-166	NM_138420	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
177273	chr4	109444201	109444400	+	0	NA	intron (NM_001318085, intron 1 of 23)	intron (NM_001318085, intron 1 of 23)	-10483	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
142266	chr20	3170751	3171400	+	0	NA	intron (NM_001282533, intron 1 of 5)	intron (NM_001282533, intron 1 of 5)	2474	NM_001365618	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
72532	chr15	34317051	34317650	+	0	NA	intron (NM_133647, intron 1 of 24)	intron (NM_133647, intron 1 of 24)	1470	NM_005135	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
147584	chr20	61718651	61718950	+	0	NA	non-coding (NR_147702, exon 2 of 2)	non-coding (NR_147702, exon 2 of 2)	948	NR_147702	100128310		NR_147702	ENSG00000179253	LOC100128310	-	uncharacterized LOC100128310	ncRNA
236004	chrX	54769971	54770130	+	0	NA	intron (NM_198510, intron 6 of 12)	L1PA2|LINE|L1	28205	NM_198510	347365		NM_198510	ENSG00000102313	ITIH6	ITIH5L|UNQ6369|dJ14O9.1	inter-alpha-trypsin inhibitor heavy chain family member 6	protein-coding
134318	chr2	136052481	136053600	+	0	NA	Intergenic	Intergenic	63195	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
116589	chr19	18256201	18256400	+	0	NA	promoter-TSS (NR_036575)	promoter-TSS (NR_036575)	-881	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
200818	chr6	137939821	137940440	+	0	NA	Intergenic	Intergenic	5670	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
20091	chr1	186421001	186421400	+	0	NA	3' UTR (NM_017847, exon 14 of 14)	3' UTR (NM_017847, exon 14 of 14)	-13961	NR_126002	102724919		NR_126002	ENSG00000229739	PDC-AS1	-	PDC antisense RNA 1	ncRNA
22659	chr1	223771651	223771750	+	0	NA	intron (NM_001748, intron 18 of 20)	intron (NM_001748, intron 18 of 20)	59161	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
91988	chr17	7429951	7430450	+	0	NA	exon (NM_001364672, exon 3 of 3)	exon (NM_001364672, exon 3 of 3)	1343	NM_001364708	107983988		NM_001364672	ENSG00000283439	SPEM3	-	SPEM family member 3	protein-coding
210452	chr7	100118701	100120950	+	0	NA	promoter-TSS (NM_001365004)	promoter-TSS (NM_001365004)	33	NM_001190415	6878		NM_005641	ENSG00000106290	TAF6	ALYUS|MGC:8964|TAF(II)70|TAF(II)80|TAF2E|TAFII-70|TAFII-80|TAFII70|TAFII80|TAFII85	TATA-box binding protein associated factor 6	protein-coding
124996	chr2	9472271	9472750	+	0	NA	intron (NM_016207, intron 17 of 17)	intron (NM_016207, intron 17 of 17)	-2041	NM_001320859	285148		NM_001039613	ENSG00000134330	IAH1	-	isoamyl acetate hydrolyzing esterase 1 (putative)	protein-coding
24782	chr1	248872951	248874630	+	0	NA	Intergenic	CpG	-14705	NM_001350072	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
193195	chr6	29742021	29742400	+	0	NA	intron (NR_026972, intron 2 of 5).3	intron (NR_026972, intron 2 of 5).3	6839	NR_026972	285830		NM_001003807	ENSG00000214922	HLA-F-AS1	-	HLA-F antisense RNA 1	ncRNA
28257	chr10	45670251	45670630	+	0	NA	intron (NM_001282906, intron 1 of 10)	AluSp|SINE|Alu	2292	NM_001282905	93550		NM_174890	ENSG00000172671	ZFAND4	ANUBL1	zinc finger AN1-type containing 4	protein-coding
4626	chr1	22111021	22111280	+	0	NA	Intergenic	Intergenic	31947	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
928	chr1	1717621	1718080	+	0	NA	intron (NM_033529, intron 4 of 19)	intron (NM_033529, intron 4 of 19)	6507	NR_132739	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
158336	chr22	50449371	50449530	+	0	NA	intron (NM_002972, intron 36 of 40)	AluSg4|SINE|Alu	25585	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
102943	chr17	76673171	76673700	+	0	NA	non-coding (NR_130916, exon 1 of 1)	non-coding (NR_130916, exon 1 of 1)	1507	NR_130916	105274304		NR_130916	ENSG00000261335	LOC105274304	-	uncharacterized LOC105274304	ncRNA
26393	chr10	16962801	16963000	+	0	NA	intron (NM_001081, intron 31 of 66)	MLT1F2|LTR|ERVL-MaLR	-145446	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
150267	chr21	41769951	41770350	+	0	NA	Intergenic	Intergenic	-3098	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
118742	chr19	38315121	38316580	+	0	NA	promoter-TSS (NM_001145462)	promoter-TSS (NM_001145462)	-70	NM_001039671	90522		NM_033557	ENSG00000167645	YIF1B	FinGER8|KABAMAS	Yip1 interacting factor homolog B, membrane trafficking protein	protein-coding
202193	chr6	156392721	156393050	+	0	NA	Intergenic	Intergenic	14135	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
180037	chr5	1058601	1059200	+	0	NA	intron (NM_006598, intron 21 of 23).2	intron (NM_006598, intron 21 of 23).2	4074	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
86415	chr16	66844121	66844380	+	0	NA	promoter-TSS (NM_001014435)	promoter-TSS (NM_001014435)	-164	NM_005182	766		NM_005182	ENSG00000168748	CA7	CA-VII|CAVII	carbonic anhydrase 7	protein-coding
124640	chr2	1799071	1799630	+	0	NA	intron (NM_001329845, intron 23 of 24)	intron (NM_001329845, intron 23 of 24)	-54835	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
229202	chr9	114735121	114736180	+	0	NA	Intergenic	Intergenic	-53458	NM_001371884	100505478		NM_001199233	ENSG00000230601	TEX48	-	testis expressed 48	protein-coding
119564	chr19	40633071	40633230	+	0	NA	Intergenic	Intergenic	31781	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
67626	chr14	72948271	72948830	+	0	NA	intron (NM_181340, intron 7 of 12)	intron (NM_181340, intron 7 of 12)	22086	NM_001352449	26094		NM_015604	ENSG00000119599	DCAF4	WDR21|WDR21A	DDB1 and CUL4 associated factor 4	protein-coding
224146	chr9	4794851	4795150	+	0	NA	intron (NM_001286699, intron 1 of 6)	intron (NM_001286699, intron 1 of 6)	2056	NM_005772	10171		NM_005772	ENSG00000120158	RCL1	RNAC|RPCL1	RNA terminal phosphate cyclase like 1	protein-coding
85580	chr16	53490521	53490980	+	0	NA	TTS (NM_022476)	TTS (NM_022476)	12459	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
101416	chr17	67392871	67393280	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSz|SINE|Alu	15794	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
98120	chr17	45823351	45824200	+	0	NA	intron (NM_001145148, intron 4 of 11)	intron (NM_001145148, intron 4 of 11)	-21106	NM_175882	162540		NM_175882	ENSG00000185294	SPPL2C	IMP5	signal peptide peptidase like 2C	protein-coding
24991	chr10	3124721	3124980	+	0	NA	intron (NM_001345944, intron 16 of 21)	intron (NM_001345944, intron 16 of 21)	-9254	NR_132758	106633806		NR_132758		SNORD142	SNORA85|SNORD174|ZL68	small nucleolar RNA, C/D box 142	snoRNA
94786	chr17	31012721	31013080	+	0	NA	intron (NM_001350575, intron 1 of 5)	intron (NM_001350575, intron 1 of 5)	4616	NM_001350579								
19249	chr1	172670401	172671480	+	0	NA	Intergenic	Intergenic	11837	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
6614	chr1	28881951	28882780	+	0	NA	Intergenic	MIRc|SINE|MIR	-4726	NM_203342	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
168141	chr3	138945951	138946050	+	0	NA	exon (NM_023067, exon 1 of 1)	exon (NM_023067, exon 1 of 1)	1137	NM_023067	668		NM_023067	ENSG00000183770	FOXL2	BPES|BPES1|PFRK|PINTO|POF3	forkhead box L2	protein-coding
37805	chr11	32887621	32888430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4786	NM_001076786	79832		NM_024774	ENSG00000060749	QSER1	-	glutamine and serine rich 1	protein-coding
195850	chr6	41441401	41442150	+	0	NA	Intergenic	Intergenic	-60669	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
213220	chr7	133290901	133291300	+	0	NA	TTS (NR_106749)	TTS (NR_106749)	219	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
37491	chr11	18400771	18400930	+	0	NA	exon (NM_001165415, exon 4 of 7)	exon (NM_001165415, exon 4 of 7)	4584	NM_001165414	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
108486	chr18	70932051	70932350	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	-281246	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
69743	chr14	98933751	98934050	+	0	NA	Intergenic	Intergenic	222287	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
217401	chr8	28352921	28353180	+	0	NA	intron (NM_018660, intron 5 of 9)	intron (NM_018660, intron 5 of 9)	14403	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
64356	chr14	24092921	24093200	+	0	NA	intron (NM_006177, intron 1 of 3).2	MLT1K|LTR|ERVL-MaLR	-1251	NM_001308054	5106		NM_004563	ENSG00000100889	PCK2	PEPCK|PEPCK-M|PEPCK2|mtPCK2	phosphoenolpyruvate carboxykinase 2, mitochondrial	protein-coding
136207	chr2	174573451	174574280	+	0	NA	intron (NM_001375837, intron 4 of 4)	L2a|LINE|L2	-15793	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
54219	chr12	79926201	79926400	+	0	NA	intron (NM_001143885, intron 2 of 25)	AluSz6|SINE|Alu	8651	NM_001244992	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
227454	chr9	90801671	90802050	+	0	NA	promoter-TSS (NM_003177)	promoter-TSS (NM_003177)	41	NM_003177	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
206209	chr7	28389501	28389700	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	-22918	NM_182898	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
48494	chr12	9850671	9850900	+	0	NA	Intergenic	L1PA2|LINE|L1	19074	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
72736	chr15	38817771	38818280	+	0	NA	Intergenic	Intergenic	121427	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
63931	chr14	22007151	22008250	+	0	NA	Intergenic	Intergenic	-336683	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
86176	chr16	57812601	57812800	+	0	NA	intron (NR_169553, intron 1 of 3)	intron (NR_169553, intron 1 of 3)	2063	NM_001278081	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
213118	chr7	131326271	131326430	+	0	NA	intron (NR_125364, intron 2 of 5)	AluSx|SINE|Alu	1429	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
183789	chr5	82104901	82105430	+	0	NA	intron (NM_031482, intron 3 of 7)	intron (NM_031482, intron 3 of 7)	133142	NM_031482	83734		NM_031482	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
4020	chr1	18936901	18937100	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	19676	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
137377	chr2	196188271	196188430	+	0	NA	Intergenic	Intergenic	-16772	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
236447	chrX	71544621	71544880	+	0	NA	intron (NM_181672, intron 4 of 21)	intron (NM_181672, intron 4 of 21)	11646	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
75862	chr15	69668551	69669650	+	0	NA	intron (NR_126437, intron 3 of 5)	intron (NR_126437, intron 3 of 5)	76900	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
117241	chr19	19431471	19432180	+	0	NA	intron (NM_001384517, intron 2 of 12)	L2b|LINE|L2	-3238	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
106449	chr18	13675401	13675800	+	0	NA	intron (NM_001098801, intron 3 of 4)	intron (NM_001098801, intron 3 of 4)	33842	NM_001276251	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207379	chr7	44115851	44116150	+	0	NA	intron (NM_006230, intron 8 of 10)	intron (NM_006230, intron 8 of 10)	5151	NR_039792	100616346		NR_039792	ENSG00000284412	MIR4649	mir-4649	microRNA 4649	ncRNA
89158	chr16	88530621	88531180	+	0	NA	intron (NR_148997, intron 1 of 3)	intron (NR_148997, intron 1 of 3)	153	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
228868	chr9	112361251	112361830	+	0	NA	Intergenic	Intergenic	-18369	NR_036651	84263		NM_032303	ENSG00000119471	HSDL2	C9orf99|SDR13C1	hydroxysteroid dehydrogenase like 2	protein-coding
22896	chr1	225851651	225853080	+	0	NA	intron (NM_014698, intron 20 of 24)	AluSx1|SINE|Alu	27011	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
30135	chr10	74058601	74059080	+	0	NA	intron (NM_014000, intron 2 of 21)	MamSINE1|SINE|tRNA-RTE	60724	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
208225	chr7	65372151	65372750	+	0	NA	Intergenic	Intergenic	-1349	NM_001287532	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
3916	chr1	17370701	17370900	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1396	NM_207421	353238		NM_207421	ENSG00000276747	PADI6	OZEMA16|PREMBL2|hPADVI	peptidyl arginine deiminase 6	protein-coding
209935	chr7	92587271	92587730	+	0	NA	intron (NM_001040057, intron 1 of 11)	AluJb|SINE|Alu	2549	NM_001288584	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
58022	chr12	124416621	124417250	+	0	NA	intron (NM_001077261, intron 15 of 47)	intron (NM_001077261, intron 15 of 47)	-79693	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
166252	chr3	112332951	112334230	+	0	NA	TTS (NR_147411)	TTS (NR_147411)	434	NM_005944	4345		NM_005944	ENSG00000091972	CD200	MOX1|MOX2|MRC|OX-2	CD200 molecule	protein-coding
88462	chr16	85025801	85026330	+	0	NA	Intergenic	Intergenic	-1686	NM_001286566	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
172518	chr4	2280921	2282530	+	0	NA	intron (NM_020972, intron 8 of 12)	intron (NM_020972, intron 8 of 12)	-19616	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
93877	chr17	21042601	21044350	+	0	NA	promoter-TSS (NM_015276)	promoter-TSS (NM_015276)	-464	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
225130	chr9	33523651	33524750	+	0	NA	promoter-TSS (NM_001353432)	promoter-TSS (NM_001353432)	-51	NM_001353432	441459		NM_001013728	ENSG00000230453	ANKRD18B	bA255A11.3|bA255A11.5	ankyrin repeat domain 18B	protein-coding
36763	chr11	9388371	9388900	+	0	NA	intron (NM_006391, intron 1 of 24)	AluJb|SINE|Alu	3983	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
89851	chr16	89599401	89599830	+	0	NA	Intergenic	Intergenic	-13693	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
51338	chr12	51383321	51383780	+	0	NA	intron (NM_007210, intron 2 of 11)	intron (NM_007210, intron 2 of 11)	-7767	NM_001267615	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
24586	chr1	245771921	245772180	+	0	NA	intron (NM_001375966, intron 7 of 8)	intron (NM_001375966, intron 7 of 8)	216501	NM_001375965	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
151969	chr22	19137701	19138950	+	0	NA	non-coding (NR_134304, exon 7 of 10)	non-coding (NR_134304, exon 7 of 10)	6326	NR_134304	8220		NM_022719	ENSG00000100056	ESS2	DGCR13|DGCR14|DGS-H|DGS-I|DGSH|DGSI|ES2|ESS-2|Es2el|bis1	ess-2 splicing factor homolog	protein-coding
125636	chr2	19362851	19363500	+	0	NA	Intergenic	CpG	-4552	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
129442	chr2	69493501	69494100	+	0	NA	intron (NM_001371575, intron 17 of 20)	L2b|LINE|L2	26371	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
118546	chr19	36121571	36121930	+	0	NA	non-coding (NR_155756, exon 4 of 6)	non-coding (NR_155756, exon 4 of 6)	5980	NM_001300971	1155		NM_001281	ENSG00000105254	TBCB	CG22|CKAP1|CKAPI	tubulin folding cofactor B	protein-coding
94318	chr17	28758171	28758750	+	0	NA	exon (NM_001288634, exon 3 of 3)	exon (NM_001288634, exon 3 of 3)	14449	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
195301	chr6	36542701	36543450	+	0	NA	intron (NM_007271, intron 1 of 13)	AluY|SINE|Alu	4404	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
116355	chr19	17868151	17868450	+	0	NA	Intergenic	AluSx|SINE|Alu	-3645	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
13121	chr1	111637551	111637900	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-17327	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
126035	chr2	25361721	25363680	+	0	NA	Intergenic	Intergenic	-20110	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
68641	chr14	89915151	89915500	+	0	NA	intron (NM_145231, intron 5 of 5)	intron (NM_145231, intron 5 of 5)	39211	NM_001284268	90141		NM_145231	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
92892	chr17	16442171	16442330	+	0	NA	TTS (NR_045021)	TTS (NR_045021)	1024	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
195034	chr6	35479921	35480600	+	0	NA	intron (NM_003214, intron 4 of 12)	intron (NM_003214, intron 4 of 12)	9752	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
84535	chr16	30530051	30530830	+	0	NA	TTS (NM_001305018)	TTS (NM_001305018)	-3874	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
92923	chr17	16652921	16654080	+	0	NA	intron (NM_020787, intron 1 of 5)	CpG	350	NM_020787	57547		NM_020787	ENSG00000197566	ZNF624	-	zinc finger protein 624	protein-coding
34647	chr10	133325351	133326230	+	0	NA	intron (NM_015722, intron 5 of 5)	CpG	11106	NM_015722	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
56049	chr12	110512251	110512930	+	0	NA	intron (NM_001286533, intron 5 of 11)	intron (NM_001286533, intron 5 of 11)	10259	NM_001368054	144715		NM_152442	ENSG00000151164	RAD9B	-	RAD9 checkpoint clamp component B	protein-coding
122699	chr19	49911371	49911730	+	0	NA	intron (NM_001193357, intron 1 of 1)	intron (NM_001193357, intron 1 of 1)	-14663	NM_152899	259307		NM_152899	ENSG00000104951	IL4I1	FIG1|LAAO|LAO|hIL4I1	interleukin 4 induced 1	protein-coding
221401	chr8	123511871	123513050	+	0	NA	intron (NM_001242463, intron 4 of 6)	intron (NM_001242463, intron 4 of 6)	19683	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
21268	chr1	204396171	204397080	+	0	NA	Intergenic	L1ME1|LINE|L1	15192	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
211454	chr7	105086221	105086780	+	0	NA	intron (NM_182931, intron 13 of 26)	AluSz|SINE|Alu	72295	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
153948	chr22	30345851	30346150	+	0	NA	intron (NM_005877, intron 3 of 15)	intron (NM_005877, intron 3 of 15)	-10624	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
183617	chr5	80218451	80219050	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	37298	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
15384	chr1	150162151	150162800	+	0	NA	intron (NR_135098, intron 1 of 3)	intron (NR_135098, intron 1 of 3)	1747	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
94582	chr17	29699271	29699430	+	0	NA	intron (NM_033389, intron 3 of 14)	intron (NM_033389, intron 3 of 14)	62082	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
186679	chr5	138654071	138655450	+	0	NA	Intergenic	Intergenic	-79359	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
176303	chr4	87380601	87381280	+	0	NA	intron (NM_016245, intron 2 of 6)	AluSz|SINE|Alu	10248	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
13828	chr1	117627401	117628030	+	0	NA	3' UTR (NM_017709, exon 2 of 2)	3' UTR (NM_017709, exon 2 of 2)	21667	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
195978	chr6	41968821	41969280	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx1|SINE|Alu	-27202	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
204726	chr7	5553751	5554250	+	0	NA	Intergenic	AluJb|SINE|Alu	-23399	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
132173	chr2	101785651	101785750	+	0	NA	intron (NM_001384572, intron 1 of 29)	(TC)n|Simple_repeat|Simple_repeat	87435	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
180128	chr5	1319651	1319750	+	0	NA	intron (NM_030782, intron 16 of 16)	intron (NM_030782, intron 16 of 16)	-10323	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
19587	chr1	179300201	179300430	+	0	NA	intron (NR_045530, intron 1 of 13)	intron (NR_045530, intron 1 of 13)	6518	NM_003101	6646		NM_003101	ENSG00000057252	SOAT1	ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT	sterol O-acyltransferase 1	protein-coding
145146	chr20	38829671	38830350	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	24313	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
143805	chr20	32466521	32466930	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	16765	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
101325	chr17	66671071	66671630	+	0	NA	intron (NM_002737, intron 5 of 16)	MIR|SINE|MIR	-115722	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
40283	chr11	63845401	63845600	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	6390	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
112121	chr19	5597921	5598380	+	0	NA	intron (NM_014649, intron 13 of 20)	AluSz|SINE|Alu	24626	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
149058	chr21	15483121	15483450	+	0	NA	Intergenic	Intergenic	-246649	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
176009	chr4	82272121	82272380	+	0	NA	Intergenic	L1PA7|LINE|L1	101741	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
32256	chr10	101975821	101976080	+	0	NA	intron (NM_024541, intron 19 of 25)	AluY|SINE|Alu	80223	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
228437	chr9	99828171	99829350	+	0	NA	exon (NM_006981, exon 3 of 8)	exon (NM_006981, exon 3 of 8)	6875	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
165284	chr3	75669841	75669950	+	0	NA	Intergenic	CpG	-2386	NR_040005	401074		NR_040004	ENSG00000242516	LINC00960	-	long intergenic non-protein coding RNA 960	ncRNA
120695	chr19	45163151	45163730	+	0	NA	intron (NM_024108, intron 5 of 5)	intron (NM_024108, intron 5 of 5)	-3290	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
73982	chr15	52006271	52006950	+	0	NA	Intergenic	Intergenic	12485	NR_156732	112543478		NR_156732	ENSG00000259438	MAPK6-DT	lncMAPK6	MAPK6 divergent transcript	ncRNA
9657	chr1	52632501	52634830	+	0	NA	exon (NM_001042693, exon 1 of 3)	exon (NM_001042693, exon 1 of 3)	497	NR_135157	348378		NM_001042693	ENSG00000182183	SHISAL2A	FAM159A|PRO7171|WWLS2783	shisa like 2A	protein-coding
162722	chr3	49014001	49014900	+	0	NA	exon (NM_018031, exon 4 of 6)	exon (NM_018031, exon 4 of 6)	4130	NM_001009996	55152		NM_018114	ENSG00000178149	DALRD3	DEE86|EIEE86	DALR anticodon binding domain containing 3	protein-coding
206424	chr7	32658051	32658380	+	0	NA	intron (NR_036680, intron 5 of 16)	intron (NR_036680, intron 5 of 16)	60953	NR_036680	100129460		NR_036680		DPY19L1P1	-	DPY19L1 pseudogene 1	pseudo
40076	chr11	62770971	62772900	+	0	NA	intron (NM_006473, intron 1 of 10)	intron (NM_006473, intron 1 of 10)	539	NM_006473	10629		NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
41778	chr11	66845271	66846780	+	0	NA	exon (NM_005133, exon 8 of 8)	exon (NM_005133, exon 8 of 8)	2584	NM_001032279	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
31632	chr10	97387851	97388550	+	0	NA	intron (NM_015179, intron 8 of 33)	intron (NM_015179, intron 8 of 33)	13140	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
170791	chr3	189049351	189050120	+	0	NA	Intergenic	L1PB1|LINE|L1	-102096	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
153660	chr22	28817971	28818530	+	0	NA	Intergenic	Intergenic	-17678	NM_005080	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
89396	chr16	88814171	88814680	+	0	NA	3' UTR (NM_001323543, exon 13 of 13)	3' UTR (NM_001323543, exon 13 of 13)	-2497	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
207073	chr7	39954271	39955280	+	0	NA	intron (NM_003718, intron 1 of 13)	intron (NM_003718, intron 1 of 13)	4415	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
23138	chr1	226708151	226709300	+	0	NA	intron (NM_002221, intron 2 of 7)	MLT1L|LTR|ERVL-MaLR	30450	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
228896	chr9	112771721	112772280	+	0	NA	intron (NM_001012994, intron 1 of 8)	intron (NM_001012994, intron 1 of 8)	21240	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
137520	chr2	197195101	197196150	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	-2366	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
100058	chr17	58120071	58120510	+	0	NA	Intergenic	Intergenic	-34864	NM_012374	26689		NM_012374	ENSG00000141194	OR4D1	OR17-23|OR4D3|OR4D4P|TPCR16	olfactory receptor family 4 subfamily D member 1	protein-coding
188332	chr5	151238101	151238650	+	0	NA	Intergenic	Intergenic	-14283	NM_015621	26112		NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
59280	chr13	24232621	24232880	+	0	NA	intron (NM_001166271, intron 2 of 12)	AluJb|SINE|Alu	21689	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
23831	chr1	234599271	234601200	+	0	NA	Intergenic	CpG	9290	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
22351	chr1	214608471	214608930	+	0	NA	intron (NM_016343, intron 1 of 19)	CpG	5505	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
164891	chr3	71100251	71100750	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	30086	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
79471	chr16	740101	741480	+	0	NA	intron (NM_001304799, intron 1 of 11)	CpG	207	NM_022493	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
153589	chr22	26772771	26772930	+	0	NA	intron (NR_110543, intron 2 of 5)	SVA_F|Retroposon|SVA	-87361	NR_146604	110091768		NR_146604		LOC110091768	-	uncharacterized LOC110091768	ncRNA
138045	chr2	201419121	201419380	+	0	NA	intron (NM_015049, intron 2 of 15)	MER58A|DNA|hAT-Charlie	32208	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
8189	chr1	39568871	39569030	+	0	NA	intron (NM_003819, intron 5 of 15)	intron (NM_003819, intron 5 of 15)	-1440	NR_002983	677834		NR_002983	ENSG00000201457	SNORA55	ACA55	small nucleolar RNA, H/ACA box 55	snoRNA
165330	chr3	88029971	88030600	+	0	NA	Intergenic	Intergenic	28711	NM_003663	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
196115	chr6	42379871	42380030	+	0	NA	intron (NM_033502, intron 2 of 17)	L2a|LINE|L2	72101	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
125114	chr2	9771451	9771750	+	0	NA	Intergenic	Intergenic	-71842	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
210627	chr7	100448021	100448600	+	0	NA	Intergenic	AluSx|SINE|Alu	-11813	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
41941	chr11	67306321	67307400	+	0	NA	exon (NM_017857, exon 4 of 14)	exon (NM_017857, exon 4 of 14)	3330	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
45949	chr11	121372821	121373280	+	0	NA	Intergenic	PRIMA4-int|LTR|ERV1	-79264	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
170460	chr3	185921251	185921350	+	0	NA	intron (NM_001243879, intron 4 of 7)	intron (NM_001243879, intron 4 of 7)	16714	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
142032	chr20	1673101	1673600	+	0	NA	Intergenic	Intergenic	-15571	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
143661	chr20	31950671	31950830	+	0	NA	intron (NM_030815, intron 1 of 4)	intron (NM_030815, intron 1 of 4)	1296	NM_030815	81572		NM_030815	ENSG00000088356	PDRG1	C20orf126|PDRG	p53 and DNA damage regulated 1	protein-coding
54707	chr12	93439251	93439700	+	0	NA	intron (NM_003348, intron 1 of 3)	AluJr|SINE|Alu	2472	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
73791	chr15	47961771	47961930	+	0	NA	Intergenic	Intergenic	-115614	NR_120336	101928442		NR_120336		LINC01491	-	long intergenic non-protein coding RNA 1491	ncRNA
62996	chr13	112312171	112312600	+	0	NA	Intergenic	Intergenic	-1082	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
44976	chr11	116902251	116902550	+	0	NA	intron (NM_001281748, intron 5 of 24)	intron (NM_001281748, intron 5 of 24)	-64450	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
46914	chr11	134232871	134233230	+	0	NA	intron (NM_052875, intron 1 of 5)	intron (NM_052875, intron 1 of 5)	-7589	NM_001372070	23310		NM_015261	ENSG00000151503	NCAPD3	CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6	non-SMC condensin II complex subunit D3	protein-coding
104673	chr17	81497771	81498130	+	0	NA	Intergenic	AluSz|SINE|Alu	14849	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
186646	chr5	138564151	138564250	+	0	NA	intron (NM_004134, intron 9 of 16)	AluSx1|SINE|Alu	-3090	NR_002913	26785		NR_002913	ENSG00000206989	SNORD63	RNU63|SNORD63A|U63	small nucleolar RNA, C/D box 63	snoRNA
67555	chr14	71318871	71319030	+	0	NA	Intergenic	AluJr|SINE|Alu	-1526	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
1047	chr1	1887451	1887780	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	3472	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
13730	chr1	116806051	116806810	+	0	NA	Intergenic	LTR16D1|LTR|ERVL	52000	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
224222	chr9	5625201	5625400	+	0	NA	Intergenic	AluJb|SINE|Alu	-3807	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
132720	chr2	109129171	109130780	+	0	NA	non-coding (NR_029193, exon 1 of 1)	non-coding (NR_029193, exon 1 of 1)	144	NR_029193	100287216		NR_029193		SH3RF3-AS1	-	SH3RF3 antisense RNA 1	ncRNA
160899	chr3	33805121	33805580	+	0	NA	intron (NM_001256192, intron 1 of 5)	AluSg7|SINE|Alu	6720	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
99633	chr17	50596621	50596880	+	0	NA	exon (NM_001256330, exon 16 of 35)	exon (NM_001256330, exon 16 of 35)	-34642	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
219312	chr8	70130501	70130730	+	0	NA	intron (NM_001321713, intron 15 of 21)	intron (NM_001321713, intron 15 of 21)	-59363	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
205980	chr7	26176521	26176980	+	0	NA	intron (NM_004289, intron 1 of 3)	SVA_A|Retroposon|SVA	23996	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
71225	chr14	105167171	105168000	+	0	NA	intron (NM_002226, intron 2 of 25)	CpG	1191	NM_002226	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
66104	chr14	59688471	59688650	+	0	NA	intron (NM_021136, intron 3 of 8)	L1PA15-16|LINE|L1	-41540	NR_049851	100847088		NR_049851	ENSG00000263629	MIR5586	-	microRNA 5586	ncRNA
113642	chr19	10338421	10340230	+	0	NA	intron (NM_001320606, intron 1 of 6)	intron (NM_001320606, intron 1 of 6)	299	NM_001320605	3385		NM_002162	ENSG00000076662	ICAM3	CD50|CDW50|ICAM-R	intercellular adhesion molecule 3	protein-coding
141356	chr2	240624251	240624350	+	0	NA	promoter-TSS (NM_005301)	promoter-TSS (NM_005301)	-945	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
174799	chr4	48087121	48087530	+	0	NA	intron (NM_003328, intron 9 of 14)	intron (NM_003328, intron 9 of 14)	46925	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
164397	chr3	58433151	58434650	+	0	NA	promoter-TSS (NM_001173468)	promoter-TSS (NM_001173468)	-48	NM_001173468	5162		NM_000925	ENSG00000168291	PDHB	E1beta|PDHBD|PDHE1-B|PDHE1B|PHE1B	pyruvate dehydrogenase E1 subunit beta	protein-coding
229185	chr9	114611021	114612300	+	0	NA	intron (NM_001330760, intron 1 of 8)	CpG	369	NM_153045	203197		NM_153045	ENSG00000157693	TMEM268	C9orf91	transmembrane protein 268	protein-coding
31415	chr10	95655901	95657130	+	0	NA	5' UTR (NM_001323416, exon 1 of 17)	5' UTR (NM_001323416, exon 1 of 17)	196	NM_001323415	5832		NM_002860	ENSG00000059573	ALDH18A1	ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B	aldehyde dehydrogenase 18 family member A1	protein-coding
118579	chr19	36296571	36296730	+	0	NA	Intergenic	SST1|Satellite|centr	-14693	NR_029389	100134317		NR_029389		LOC100134317	-	uncharacterized LOC100134317	ncRNA
150248	chr21	41421451	41421550	+	0	NA	intron (NM_001144925, intron 1 of 18)	LTR5_Hs|LTR|ERVK	942	NM_001144925	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
82163	chr16	14910661	14913000	+	0	NA	promoter-TSS (NR_146231)	promoter-TSS (NR_146231)	68	NR_146231	109951030		NR_146231		PKD1P3-NPIPA1	-	PKD1P3-NPIPA1 readthrough	pseudo
135332	chr2	160375451	160376050	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	32132	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
95557	chr17	36921401	36921750	+	0	NA	intron (NR_135670, intron 1 of 1)	intron (NR_135670, intron 1 of 1)	15086	NR_135670	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
104774	chr17	81711721	81712980	+	0	NA	promoter-TSS (NM_001270888)	promoter-TSS (NM_001270888)	66	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
37780	chr11	32374201	32374400	+	0	NA	Intergenic	LTR41B|LTR|ERVL	26100	NM_001367854	7490		NM_000378	ENSG00000184937	WT1	AWT1|GUD|NPHS4|WAGR|WIT-2|WT-1|WT33	WT1 transcription factor	protein-coding
58392	chr12	131895501	131897300	+	0	NA	intron (NM_003565, intron 3 of 27)	intron (NM_003565, intron 3 of 27)	1778	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
233416	chr9	137589651	137591140	+	0	NA	5' UTR (NM_138462, exon 1 of 6)	5' UTR (NM_138462, exon 1 of 6)	117	NM_138462	116225		NM_138462	ENSG00000165724	ZMYND19	MIZIP	zinc finger MYND-type containing 19	protein-coding
222018	chr8	130067901	130069000	+	0	NA	intron (NM_001362924, intron 28 of 30)	MER21-int|LTR|ERVL	16318	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
70175	chr14	100328721	100328980	+	0	NA	exon (NM_207117, exon 5 of 6)	exon (NM_207117, exon 5 of 6)	5511	NM_001350877	283600		NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDCMP|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
41258	chr11	65832551	65832650	+	0	NA	Intergenic	Intergenic	-1363	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
184443	chr5	99087221	99087480	+	0	NA	Intergenic	Intergenic	158216	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
28531	chr10	50469871	50470600	+	0	NA	intron (NM_147156, intron 3 of 10)	intron (NM_147156, intron 3 of 10)	153721	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
167522	chr3	129279501	129280580	+	0	NA	intron (NM_001370345, intron 2 of 5)	intron (NM_001370345, intron 2 of 5)	1046	NM_001370343	56941		NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine binding, ES cell specific	protein-coding
185045	chr5	115830971	115831550	+	0	NA	non-coding (NR_073603, exon 6 of 6)	non-coding (NR_073603, exon 6 of 6)	10305	NM_001277783	9140		NM_004707	ENSG00000145782	ATG12	APG12|APG12L|FBR93|HAPG12	autophagy related 12	protein-coding
122970	chr19	50791021	50791530	+	0	NA	intron (NM_033068, intron 3 of 10)	intron (NM_033068, intron 3 of 10)	860	NM_033068	93650		NM_033068	ENSG00000142513	ACP4	ACPT|AI1J	acid phosphatase 4	protein-coding
77943	chr15	89336331	89336650	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-1666	NM_002693	5428		NM_002693	ENSG00000140521	POLG	MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE	DNA polymerase gamma, catalytic subunit	protein-coding
106476	chr18	14177621	14177930	+	0	NA	Intergenic	REP522|Satellite|telo	-1322	NR_040113	440482		NM_001029999		ANKRD20A5P	ANKRD20A5	ankyrin repeat domain 20 family member A5, pseudogene	pseudo
207346	chr7	44071321	44071630	+	0	NA	TTS (NR_156113)	TTS (NR_156113)	1958	NR_106897	102465504		NR_106897	ENSG00000283969	MIR6838	hsa-mir-6838	microRNA 6838	ncRNA
195586	chr6	37525471	37526030	+	0	NA	intron (NR_126057, intron 1 of 3)	intron (NR_126057, intron 1 of 3)	18402	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
165766	chr3	105762271	105762430	+	0	NA	intron (NR_135806, intron 4 of 20)	THE1B-int|LTR|ERVL-MaLR	105241	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
50684	chr12	48861051	48861930	+	0	NA	intron (NM_014470, intron 3 of 4)	intron (NM_014470, intron 3 of 4)	4380	NM_014470	27289		NM_014470	ENSG00000172602	RND1	ARHS|RHO6|RHOS	Rho family GTPase 1	protein-coding
11643	chr1	91775271	91775630	+	0	NA	intron (NR_036634, intron 4 of 17)	L2a|LINE|L2	110701	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
186990	chr5	139710301	139712130	+	0	NA	Intergenic	CpG	35008	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
32776	chr10	104349821	104350630	+	0	NA	Intergenic	L2b|LINE|L2	3350	NR_108036	100505869		NR_108036	ENSG00000231233	CFAP58-DT	CCDC147-AS1|CFAP58-AS1|lncITPRIP-1	CFAP58 divergent transcript	ncRNA
190405	chr5	179810351	179810450	+	0	NA	intron (NM_001142299, intron 1 of 8)	L1PA5|LINE|L1	3391	NM_001142299	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
119282	chr19	39679021	39679830	+	0	NA	promoter-TSS (NR_034156)	promoter-TSS (NR_034156)	51	NR_034156	400696		NM_207646	ENSG00000291086	LGALS17A	-	galectin 14 pseudogene	pseudo
179615	chr4	186037901	186038430	+	0	NA	Intergenic	Intergenic	-30991	NM_003265	7098		NM_003265	ENSG00000164342	TLR3	CD283|IIAE2|IMD83	toll like receptor 3	protein-coding
59466	chr13	26049651	26050300	+	0	NA	intron (NM_001007538, intron 1 of 1)	intron (NM_001007538, intron 1 of 1)	2041	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
89026	chr16	88348001	88348400	+	0	NA	Intergenic	Intergenic	-34759	NM_001367624	84627		NM_001127464	ENSG00000225614	ZNF469	BCS|BCS1|Zfp469	zinc finger protein 469	protein-coding
211040	chr7	102427971	102428280	+	0	NA	Intergenic	AluJb|SINE|Alu	-5405	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
101541	chr17	67963071	67963700	+	0	NA	intron (NM_182641, intron 24 of 27)	intron (NM_182641, intron 24 of 27)	30221	NM_181656	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
55014	chr12	96374571	96374930	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	25689	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
159993	chr3	18350301	18350500	+	0	NA	intron (NM_001322873, intron 10 of 10)	intron (NM_001322873, intron 10 of 10)	74939	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
119913	chr19	41644821	41645150	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-17911	NM_001362493	1089		NM_001817	ENSG00000105352	CEACAM4	CGM7|CGM7_HUMAN|NCA	CEA cell adhesion molecule 4	protein-coding
38698	chr11	46615271	46615830	+	0	NA	intron (NM_173811, intron 2 of 2)	intron (NM_173811, intron 2 of 2)	1677	NM_173811	283254		NM_173811	ENSG00000180423	HARBI1	C11orf77	harbinger transposase derived 1	protein-coding
136250	chr2	174624721	174625130	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	9680	NM_001375837	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
39431	chr11	60905471	60907300	+	0	NA	5' UTR (NM_014502, exon 1 of 16)	5' UTR (NM_014502, exon 1 of 16)	200	NM_014502	27339		NM_014502	ENSG00000110107	PRPF19	NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4	pre-mRNA processing factor 19	protein-coding
195807	chr6	41100801	41101100	+	0	NA	promoter-TSS (NR_026938)	promoter-TSS (NR_026938)	-84	NR_026938	221442		NM_001010871	ENSG00000290554	ADCY10P1	-	ADCY10 pseudogene 1	pseudo
124947	chr2	8628521	8628850	+	0	NA	Intergenic	Intergenic	-44893	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
17972	chr1	160453071	160453850	+	0	NA	Intergenic	Intergenic	52896	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
99354	chr17	49883351	49883650	+	0	NA	Intergenic	Intergenic	-35483	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
127481	chr2	42240071	42240430	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-70019	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
20629	chr1	199168751	199169350	+	0	NA	intron (NR_147896, intron 3 of 3)	intron (NR_147896, intron 3 of 3)	20452	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
179488	chr4	184575321	184575780	+	0	NA	Intergenic	L1MDa|LINE|L1	-37967	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
114125	chr19	11194151	11194450	+	0	NA	intron (NM_015493, intron 3 of 12)	intron (NM_015493, intron 3 of 12)	3245	NM_001379557	25959		NM_015493	ENSG00000197256	KANK2	ANKRD25|MXRA3|NPHS16|PPKWH|SIP	KN motif and ankyrin repeat domains 2	protein-coding
17301	chr1	156445701	156446600	+	0	NA	Intergenic	Tigger19b|DNA|TcMar-Tigger	-16602	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
192409	chr6	24849801	24850200	+	0	NA	intron (NM_001286447, intron 10 of 13)	intron (NM_001286447, intron 10 of 13)	27270	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
165798	chr3	105807701	105808300	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	59591	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
98577	chr17	47722551	47722650	+	0	NA	Intergenic	MIRb|SINE|MIR	-10636	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
71672	chr15	19428671	19428830	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-853994	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
69784	chr14	99183551	99183650	+	0	NA	intron (NM_022898, intron 2 of 2)	MIRb|SINE|MIR	88597	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
30514	chr10	79343471	79344050	+	0	NA	Intergenic	Intergenic	-3709	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
147262	chr20	57435351	57436180	+	0	NA	Intergenic	Intergenic	-42709	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
137871	chr2	200831971	200832330	+	0	NA	Intergenic	LTR50|LTR|ERVL	19764	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
181802	chr5	52491351	52491490	+	0	NA	Intergenic	Intergenic	-296496	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
68010	chr14	75068951	75070100	+	0	NA	promoter-TSS (NM_001302617)	promoter-TSS (NM_001302617)	-35	NM_001302617	97		NM_001107	ENSG00000119640	ACYP1	ACYPE	acylphosphatase 1	protein-coding
162895	chr3	49393321	49394050	+	0	NA	intron (NM_001313943, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	18291	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
116967	chr19	18868071	18868650	+	0	NA	TTS (NM_002911)	TTS (NM_002911)	27798	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
235933	chrX	53196071	53196430	+	0	NA	promoter-TSS (NR_106955)	promoter-TSS (NR_106955)	-762	NR_106955	102465539		NR_106955	ENSG00000276575	MIR6895	hsa-mir-6895	microRNA 6895	ncRNA
209502	chr7	76954471	76955030	+	0	NA	Intergenic	AluY|SINE|Alu	-26072	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
117823	chr19	30222401	30222650	+	0	NA	Intergenic	CpG	-3067	NM_001376110	9745		NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
169385	chr3	160485521	160485880	+	0	NA	promoter-TSS (NR_148403)	promoter-TSS (NR_148403)	47	NR_148403	100174949		NR_148401	ENSG00000248710	TRIM59-IFT80	IFT80-L	TRIM59-IFT80 readthrough (NMD candidate)	ncRNA
177718	chr4	122157601	122157800	+	0	NA	intron (NM_001384125, intron 2 of 87)	MLT1F1|LTR|ERVL-MaLR	5369	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
42361	chr11	68615701	68615900	+	0	NA	TTS (NM_001352375)	TTS (NM_001352375)	-68744	NM_015973	51083		NM_015973	ENSG00000069482	GAL	ETL8|GAL-GMAP|GALN|GLNN|GMAP	galanin and GMAP prepropeptide	protein-coding
224197	chr9	5448751	5449050	+	0	NA	Intergenic	MIR3|SINE|MIR	-1603	NM_001267706	29126		NM_014143	ENSG00000120217	CD274	B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1|hPD-L1	CD274 molecule	protein-coding
55837	chr12	109050721	109050980	+	0	NA	intron (NM_001301175, intron 4 of 15)	AluSx3|SINE|Alu	-1726	NM_032663	84749		NM_032663	ENSG00000135093	USP30	-	ubiquitin specific peptidase 30	protein-coding
129711	chr2	70855571	70855930	+	0	NA	Intergenic	L1MC4|LINE|L1	-19934	NM_015717	50489		NM_015717	ENSG00000116031	CD207	CLEC4K	CD207 molecule	protein-coding
83205	chr16	23556751	23558430	+	0	NA	promoter-TSS (NR_003501)	promoter-TSS (NR_003501)	-137	NM_019116	56061		NM_019116	ENSG00000103353	UBFD1	UBPH	ubiquitin family domain containing 1	protein-coding
18528	chr1	161933921	161934580	+	0	NA	intron (NM_007348, intron 15 of 15)	intron (NM_007348, intron 15 of 15)	90215	NM_001347700	25903		NM_015441	ENSG00000162745	OLFML2B	-	olfactomedin like 2B	protein-coding
226509	chr9	71796381	71796980	+	0	NA	Intergenic	MER66B|LTR|ERV1	-28167	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
145179	chr20	38867871	38868650	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-58157	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
84114	chr16	29665201	29665900	+	0	NA	3' UTR (NM_001030288, exon 2 of 2)	3' UTR (NM_001030288, exon 2 of 2)	2303	NM_003123	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
660	chr1	1362251	1362550	+	0	NA	promoter-TSS (NM_001282583)	promoter-TSS (NM_001282583)	-601	NM_001282583	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
123021	chr19	51122171	51122850	+	0	NA	Intergenic	AluSg|SINE|Alu	-2370	NM_001198558	27180		NM_014441	ENSG00000129450	SIGLEC9	CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9	sialic acid binding Ig like lectin 9	protein-coding
54737	chr12	93744101	93744300	+	0	NA	intron (NM_001320100, intron 2 of 2)	MLT1E2|LTR|ERVL-MaLR	-6377	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
142332	chr20	3679371	3679730	+	0	NA	exon (NM_001282447, exon 2 of 22)	exon (NM_001282447, exon 2 of 22)	2460	NM_001282447	80332		NM_025220	ENSG00000149451	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
39529	chr11	61094171	61094830	+	0	NA	intron (NM_001346456, intron 1 of 10)	HERVE_a-int|LTR|ERV1	537	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
29775	chr10	72267201	72267600	+	0	NA	Intergenic	AluSz|SINE|Alu	-6524	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
186774	chr5	139339871	139340350	+	0	NA	Intergenic	AluJb|SINE|Alu	-1722	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
122794	chr19	50335451	50336180	+	0	NA	intron (NR_002798, intron 5 of 8)	intron (NR_002798, intron 5 of 8)	-2279	NR_110912	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
151963	chr22	19134171	19134330	+	0	NA	exon (NM_022719, exon 10 of 10)	exon (NM_022719, exon 10 of 10)	2942	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
165030	chr3	71413501	71413700	+	0	NA	intron (NM_001012505, intron 3 of 6)	L1ME2z|LINE|L1	-108829	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
29614	chr10	71763101	71763530	+	0	NA	intron (NM_022153, intron 1 of 6)	intron (NM_022153, intron 1 of 6)	10205	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
68766	chr14	91068721	91069350	+	0	NA	intron (NM_001358312, intron 1 of 13)	MER113|DNA|hAT-Charlie	-8386	NM_182398	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
144578	chr20	35777801	35778000	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	5885	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
138870	chr2	216857271	216857430	+	0	NA	Intergenic	Intergenic	2714	NM_003284	7141		NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1	protein-coding
136556	chr2	177423971	177424130	+	0	NA	intron (NM_003659, intron 2 of 19)	L1PA10|LINE|L1	31277	NM_003659	8540		NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3	alkylglycerone phosphate synthase	protein-coding
23495	chr1	228647701	228648300	+	0	NA	intron (NR_037962, intron 1 of 2)	CpG	-1842	NR_023374	100169763		NR_023374	ENSG00000199270	RNA5S12	RN5S12	RNA, 5S ribosomal 12	rRNA
23801	chr1	234314921	234316100	+	0	NA	intron (NM_173508, intron 4 of 7)	MIRb|SINE|MIR	9043	NR_039818	100616380		NR_039818	ENSG00000264377	MIR4671	-	microRNA 4671	ncRNA
234858	chrX	24805921	24806430	+	0	NA	intron (NR_165483, intron 25 of 35)	intron (NR_165483, intron 25 of 35)	61734	NR_003007	677773		NR_003007	ENSG00000251869	SCARNA23	ACA12	small Cajal body-specific RNA 23	ncRNA
177122	chr4	108101571	108101730	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	65147	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
123545	chr19	54370101	54371350	+	0	NA	promoter-TSS (NM_001289027).3	promoter-TSS (NM_001289027).3	-169	NM_001289026	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
138345	chr2	203873571	203873730	+	0	NA	3' UTR (NM_005214, exon 4 of 4)	3' UTR (NM_005214, exon 4 of 4)	5879	NM_001037631	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
188032	chr5	149654351	149654450	+	0	NA	Intergenic	(CCTCC)n|Simple_repeat|Simple_repeat	72902	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
100358	chr17	59966571	59966730	+	0	NA	intron (NR_110815, intron 2 of 3)	intron (NR_110815, intron 2 of 3)	1554	NR_110816	101927755		NR_110815	ENSG00000267302	RNFT1-DT	-	RNFT1 divergent transcript	ncRNA
104990	chr17	82011371	82012330	+	0	NA	intron (NR_045351, intron 10 of 14)	intron (NR_045351, intron 10 of 14)	11028	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
110747	chr19	2338071	2338600	+	0	NA	intron (NM_152988, intron 3 of 14)	intron (NM_152988, intron 3 of 14)	9651	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
58484	chr12	132152601	132152800	+	0	NA	TTS (NM_024078)	TTS (NM_024078)	8243	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
183783	chr5	81971231	81973200	+	0	NA	5' UTR (NM_001131028, exon 1 of 9)	5' UTR (NM_001131028, exon 1 of 9)	192	NM_031482	83734		NM_031482	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
158262	chr22	50317251	50317350	+	0	NA	exon (NM_001001794, exon 5 of 20)	exon (NM_001001794, exon 5 of 20)	-9654	NM_001376869	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
207373	chr7	44111151	44111450	+	0	NA	TTS (NR_039792)	TTS (NR_039792)	451	NR_039792	100616346		NR_039792	ENSG00000284412	MIR4649	mir-4649	microRNA 4649	ncRNA
106443	chr18	13627851	13628150	+	0	NA	intron (NM_001378101, intron 5 of 5)	intron (NM_001378101, intron 5 of 5)	-13758	NM_001276251	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
23108	chr1	226677151	226677800	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-2407	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
181155	chr5	38980401	38980600	+	0	NA	intron (NM_001285439, intron 8 of 38)	intron (NM_001285439, intron 8 of 38)	93899	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
184476	chr5	100827301	100828350	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-11260	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
31602	chr10	97363201	97363400	+	0	NA	intron (NM_015179, intron 30 of 33)	intron (NM_015179, intron 30 of 33)	-28571	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
23460	chr1	228514971	228515550	+	0	NA	Intergenic	L1MB5|LINE|L1	-2972	NM_001287262	100129094		NM_001287262		BTNL10P	BTN4|BTNL10|BUTR1	butyrophilin like 10, pseudogene	pseudo
166707	chr3	120719221	120720080	+	0	NA	intron (NM_173825, intron 2 of 7)	L1PA4|LINE|L1	22866	NM_173825	285282		NM_173825	ENSG00000144840	RABL3	PNCA5	RAB, member of RAS oncogene family like 3	protein-coding
239154	chrY	11331901	11332300	+	0	NA	Intergenic	Intergenic	1089490	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
218457	chr8	48279971	48280330	+	0	NA	Intergenic	Intergenic	-271417	NR_105002	101929268		NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
122693	chr19	49896001	49896330	+	0	NA	non-coding (NR_047577, exon 5 of 11)	non-coding (NR_047577, exon 5 of 11)	722	NM_001385639	259307		NM_152899	ENSG00000104951	IL4I1	FIG1|LAAO|LAO|hIL4I1	interleukin 4 induced 1	protein-coding
1867	chr1	6418721	6419180	+	0	NA	exon (NM_019089, exon 4 of 4)	exon (NM_019089, exon 4 of 4)	969	NM_019089	54626		NM_019089	ENSG00000069812	HES2	bHLHb40	hes family bHLH transcription factor 2	protein-coding
204140	chr7	2359251	2359550	+	0	NA	intron (NM_001362791, intron 1 of 18)	MER21C|LTR|ERVL	4573	NM_001362791	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
121410	chr19	46977701	46977900	+	0	NA	intron (NM_004491, intron 3 of 6)	MIR|SINE|MIR	-42037	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
145720	chr20	45041021	45042200	+	0	NA	intron (NM_006282, intron 10 of 10)	L1MC5|LINE|L1	59517	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
176309	chr4	87400171	87400530	+	0	NA	Intergenic	MER52A|LTR|ERV1	-9162	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
186673	chr5	138649071	138649480	+	0	NA	Intergenic	Intergenic	-73874	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
104646	chr17	81456271	81456630	+	0	NA	exon (NM_001291324, exon 17 of 29)	exon (NM_001291324, exon 17 of 29)	-5262	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
130175	chr2	82526201	82526400	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-330503	NR_033423	1720		NR_033423		DHFRP3	-	dihydrofolate reductase pseudogene 3	pseudo
19699	chr1	181062101	181063150	+	0	NA	TTS (NM_001194999)	TTS (NM_001194999)	-26075	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
196898	chr6	52307421	52308550	+	0	NA	Intergenic	Intergenic	-23243	NM_001270472	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
149358	chr21	29298301	29299800	+	0	NA	promoter-TSS (NM_206866)	promoter-TSS (NM_206866)	128	NM_001186	571		NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding
155721	chr22	39127651	39128350	+	0	NA	Intergenic	AluSg|SINE|Alu	24680	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
101025	chr17	64781101	64781800	+	0	NA	promoter-TSS (NR_027487)	promoter-TSS (NR_027487)	54	NR_027487	146880		NM_172001		ARHGAP27P1	-	Rho GTPase activating protein 27 pseudogene 1	pseudo
183684	chr5	80687901	80688330	+	0	NA	intron (NM_002439, intron 8 of 23)	intron (NM_002439, intron 8 of 23)	-33132	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
66515	chr14	61724271	61724680	+	0	NA	intron (NM_181054, intron 4 of 13)	intron (NM_181054, intron 4 of 13)	24614	NR_045406	100750247		NR_045406		HIF1A-AS2	3'aHIF-1A|aHIF	HIF1A antisense RNA 2	ncRNA
91717	chr17	6638101	6638300	+	0	NA	intron (NM_014804, intron 1 of 18)	intron (NM_014804, intron 1 of 18)	2511	NM_014804	9851		NM_014804	ENSG00000198920	KIAA0753	JBTS38|MNR|OFIP|SRTD21	KIAA0753	protein-coding
47954	chr12	6855221	6855880	+	0	NA	intron (NR_168456, intron 2 of 19)	intron (NR_168456, intron 2 of 19)	3400	NR_168456	8078		NM_003481	ENSG00000111667	USP5	ISOT	ubiquitin specific peptidase 5	protein-coding
83313	chr16	24574151	24575030	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	35003	NM_032626	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
128480	chr2	58042571	58042730	+	0	NA	intron (NM_001288837, intron 4 of 15)	intron (NM_001288837, intron 4 of 15)	-3992	NM_001130480	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
65480	chr14	51864871	51865380	+	0	NA	intron (NM_001243774, intron 1 of 2)	intron (NM_001243774, intron 1 of 2)	4513	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
176003	chr4	82152671	82153030	+	0	NA	Intergenic	L1PA13|LINE|L1	221141	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
82481	chr16	17340401	17340680	+	0	NA	intron (NM_022166, intron 2 of 11)	intron (NM_022166, intron 2 of 11)	130420	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
185521	chr5	131332601	131332800	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA4|LINE|L1	68647	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
62397	chr13	99279471	99279830	+	0	NA	intron (NR_026644, intron 4 of 8)	MLT1A0|LTR|ERVL-MaLR	-21222	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
213895	chr7	142462871	142463700	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-11242	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
44377	chr11	102561571	102561830	+	0	NA	Intergenic	MER5C|DNA|hAT-Charlie	-30953	NM_002423	4316		NM_002423	ENSG00000137673	MMP7	MMP-7|MPSL1|PUMP-1	matrix metallopeptidase 7	protein-coding
221434	chr8	123922201	123922780	+	0	NA	intron (NM_001039112, intron 1 of 40)	intron (NM_001039112, intron 1 of 40)	70503	NM_001039112	654463		NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1 like family member 6	protein-coding
237274	chrX	111095901	111096950	+	0	NA	intron (NR_136740, intron 1 of 2)	CpG	234	NM_001324333	5063		NM_002578	ENSG00000077264	PAK3	ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|XLID30|bPAK|beta-PAK	p21 (RAC1) activated kinase 3	protein-coding
149671	chr21	33588051	33589220	+	0	NA	promoter-TSS (NM_017613)	promoter-TSS (NM_017613)	49	NM_017613	29980		NM_017613	ENSG00000159147	DONSON	B17|C21orf60|MIMIS|MISSLA	DNA replication fork stabilization factor DONSON	protein-coding
69145	chr14	92553521	92554080	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	-22434	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
172242	chr4	1350201	1350400	+	0	NA	intron (NM_001317935, intron 3 of 13)	intron (NM_001317935, intron 3 of 13)	2744	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
32849	chr10	110059201	110059400	+	0	NA	intron (NM_016824, intron 1 of 14)	AluSz|SINE|Alu	-50919	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
77365	chr15	82813471	82814180	+	0	NA	intron (NM_001080435, intron 2 of 9)	AluSz|SINE|Alu	4197	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
27098	chr10	27503771	27505330	+	0	NA	intron (NR_046172, intron 1 of 5)	CpG	246	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
51742	chr12	53235051	53235600	+	0	NA	Intergenic	(TCCTC)n|Simple_repeat|Simple_repeat	-3069	NM_001243730	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
84505	chr16	30505051	30505350	+	0	NA	intron (NM_001114380, intron 16 of 28)	intron (NM_001114380, intron 16 of 28)	1281	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
180441	chr5	10552751	10553050	+	0	NA	Intergenic	Intergenic	-11170	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
132179	chr2	101807051	101807150	+	0	NA	intron (NM_001384572, intron 2 of 29)	AluJr|SINE|Alu	108835	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
75045	chr15	64156371	64157050	+	0	NA	non-coding (NR_073534, exon 7 of 7)	non-coding (NR_073534, exon 7 of 7)	4979	NM_024798	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
202177	chr6	155882421	155882680	+	0	NA	Intergenic	LTR35B|LTR|ERV1	-64247	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
126335	chr2	27367901	27368500	+	0	NA	intron (NM_172195, intron 5 of 11)	intron (NM_172195, intron 5 of 11)	1852	NM_001318965	8890		NM_015636	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta|VWM4	eukaryotic translation initiation factor 2B subunit delta	protein-coding
196866	chr6	49462671	49463850	+	0	NA	promoter-TSS (NM_018132)	promoter-TSS (NM_018132)	-7	NM_000255	4594		NM_000255	ENSG00000146085	MMUT	MCM|MUT	methylmalonyl-CoA mutase	protein-coding
195334	chr6	36619401	36619700	+	0	NA	Intergenic	AluSz6|SINE|Alu	2962	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
231245	chr9	129983851	129984880	+	0	NA	intron (NM_001363755, intron 2 of 15)	L1M7|LINE|L1	58824	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
165217	chr3	72938601	72939280	+	0	NA	intron (NR_138564, intron 3 of 6)	intron (NR_138564, intron 3 of 6)	50894	NM_001080393	727936		NM_001080393	ENSG00000172986	GXYLT2	GLT8D4	glucoside xylosyltransferase 2	protein-coding
195001	chr6	35402251	35402350	+	0	NA	intron (NM_001171818, intron 3 of 8)	intron (NM_001171818, intron 3 of 8)	-50038	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
159670	chr3	15386021	15386280	+	0	NA	Intergenic	MER41B|LTR|ERV1	41394	NM_152396	131965		NM_152396	ENSG00000206562	METTL6	hMETTL6	methyltransferase 6, tRNA N3-cytidine	protein-coding
26442	chr10	17290271	17290500	+	0	NA	Intergenic	LFSINE_Vert|SINE|tRNA	-60400	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
116055	chr19	17219401	17219680	+	0	NA	intron (NM_018467, intron 7 of 7)	L2c|LINE|L2	4183	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
8941	chr1	44214571	44214980	+	0	NA	exon (NM_001034023, exon 4 of 11)	exon (NM_001034023, exon 4 of 11)	1304	NM_019100	55929		NM_019100	ENSG00000178028	DMAP1	DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4	DNA methyltransferase 1 associated protein 1	protein-coding
38112	chr11	35229671	35230030	+	0	NA	3' UTR (NM_000610, exon 18 of 18)	3' UTR (NM_000610, exon 18 of 18)	66900	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
77390	chr15	83014071	83014650	+	0	NA	Intergenic	Intergenic	-2721	NM_001160114	123207		NM_144597	ENSG00000169609	C15orf40	-	chromosome 15 open reading frame 40	protein-coding
91925	chr17	7323071	7323500	+	0	NA	intron (NM_032442, intron 14 of 28)	intron (NM_032442, intron 14 of 28)	6050	NM_032442	84461		NM_032442	ENSG00000215041	NEURL4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding
89997	chr16	89876151	89876250	+	0	NA	intron (NM_014972, intron 1 of 17)	intron (NM_014972, intron 1 of 17)	2608	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
1565	chr1	3530521	3532200	+	0	NA	intron (NM_001409, intron 4 of 36)	CpG	29430	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
107972	chr18	58547951	58548250	+	0	NA	intron (NM_052947, intron 4 of 12)	intron (NM_052947, intron 4 of 12)	-52520	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
112448	chr19	6375821	6376130	+	0	NA	promoter-TSS (NM_004158)	promoter-TSS (NM_004158)	-59	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
50293	chr12	46381551	46381900	+	0	NA	Intergenic	Intergenic	-1951	NR_125380	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
153583	chr22	26678801	26679550	+	0	NA	intron (NR_110543, intron 1 of 5)	intron (NR_110543, intron 1 of 5)	6332	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
92040	chr17	7492571	7493700	+	0	NA	intron (NM_000937, intron 1 of 29)	MamRep605|LTR?|LTR?	8769	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
100671	chr17	63750471	63750630	+	0	NA	intron (NM_020198, intron 12 of 12)	intron (NM_020198, intron 12 of 12)	-8564	NM_001165970	92335		NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk	STE20 related adaptor alpha	protein-coding
178416	chr4	147740151	147740450	+	0	NA	intron (NM_024605, intron 1 of 22)	MIRb|SINE|MIR	8212	NM_024605	79658		NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
30498	chr10	79292651	79293550	+	0	NA	intron (NM_020338, intron 11 of 24)	intron (NM_020338, intron 11 of 24)	-54369	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
51308	chr12	51269071	51271100	+	0	NA	5' UTR (NM_001033873, exon 1 of 4)	5' UTR (NM_001033873, exon 1 of 4)	125	NM_001033873	57228		NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
123827	chr19	55216301	55217450	+	0	NA	Intergenic	Intergenic	-7374	NM_001161440	5794		NM_002842	ENSG00000080031	PTPRH	R-PTP-H|SAP1	protein tyrosine phosphatase receptor type H	protein-coding
43111	chr11	75142771	75143600	+	0	NA	Intergenic	Intergenic	-7922	NM_001145212	11309		NM_007256	ENSG00000137491	SLCO2B1	OATP-B|OATP2B1|OATPB|SLC21A9	solute carrier organic anion transporter family member 2B1	protein-coding
215150	chr7	155471301	155471500	+	0	NA	Intergenic	Intergenic	13271	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
49265	chr12	19482101	19483130	+	0	NA	intron (NM_153207, intron 3 of 7)	L1PB2|LINE|L1	42016	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
2372	chr1	9399701	9399900	+	0	NA	Intergenic	Intergenic	29116	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
189244	chr5	171986951	171987050	+	0	NA	intron (NM_012300, intron 1 of 12)	MER1B|DNA|hAT-Charlie	19638	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
115656	chr19	16129921	16130180	+	0	NA	intron (NM_005370, intron 7 of 7)	intron (NM_005370, intron 7 of 7)	-3978	NR_111904	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
30105	chr10	73974001	73974950	+	0	NA	Intergenic	Intergenic	-23641	NM_014000	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
171486	chr3	196537121	196537730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-22079	NM_001077657	255798		NM_001077657	ENSG00000214097	SMCO1	C3orf43	single-pass membrane protein with coiled-coil domains 1	protein-coding
156574	chr22	41482171	41482330	+	0	NA	intron (NM_001098, intron 1 of 17)	intron (NM_001098, intron 1 of 17)	13133	NM_001098	50		NM_001098	ENSG00000100412	ACO2	ACONM|HEL-S-284|ICRD|OCA8|OPA9	aconitase 2	protein-coding
125187	chr2	10121941	10123370	+	0	NA	promoter-TSS (NM_001165931)	promoter-TSS (NM_001165931)	-84	NR_164157	6241		NM_001034	ENSG00000171848	RRM2	C2orf48|R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
4023	chr1	18938171	18938330	+	0	NA	intron (NM_001136265, intron 1 of 8)	MIRb|SINE|MIR	18426	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
207079	chr7	39961201	39961400	+	0	NA	intron (NM_003718, intron 1 of 13)	AluSz|SINE|Alu	10940	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
63372	chr13	114050851	114051650	+	0	NA	intron (NM_001320822, intron 3 of 23).2	intron (NM_001320822, intron 3 of 23).2	26705	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
195280	chr6	36508701	36508930	+	0	NA	intron (NM_007271, intron 7 of 13)	MER52A|LTR|ERV1	38664	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
137077	chr2	190913601	190914300	+	0	NA	intron (NM_014905, intron 7 of 17)	AluJr|SINE|Alu	33129	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
97243	chr17	42977971	42978530	+	0	NA	intron (NM_001142653, intron 3 of 5)	AluSx|SINE|Alu	1753	NM_025267	100885850		NM_025267	ENSG00000108825	PTGES3L-AARSD1	-	PTGES3L-AARSD1 readthrough	protein-coding
49290	chr12	20369351	20369650	+	0	NA	exon (NM_001378407, exon 1 of 14)	exon (NM_001378407, exon 1 of 14)	963	NM_000921	5139		NM_000921	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB	phosphodiesterase 3A	protein-coding
28429	chr10	48309701	48310150	+	0	NA	intron (NM_001323331, intron 2 of 12)	intron (NM_001323331, intron 2 of 12)	3248	NM_001323320	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
63901	chr14	21887271	21888100	+	0	NA	Intergenic	Intergenic	-216668	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
72706	chr15	38647071	38647230	+	0	NA	Intergenic	L2a|LINE|L2	-49448	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
44668	chr11	110446921	110447180	+	0	NA	intron (NM_004109, intron 2 of 3)	AluSg|SINE|Alu	17102	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
115906	chr19	16597501	16597900	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-25285	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
177297	chr4	109598221	109598480	+	0	NA	intron (NM_017918, intron 1 of 7)	SVA_D|Retroposon|SVA	38104	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
43818	chr11	86673271	86673430	+	0	NA	promoter-TSS (NM_001351934)	promoter-TSS (NM_001351934)	-714	NR_147830	10873		NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
96446	chr17	40201651	40202400	+	0	NA	Intergenic	Intergenic	8428	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
138521	chr2	207337121	207338050	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-68161	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA
123321	chr19	53580771	53580930	+	0	NA	TTS (NM_001253801)	TTS (NM_001253801)	22647	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
35124	chr11	694271	697280	+	0	NA	promoter-TSS (NM_001293634)	promoter-TSS (NM_001293634)	-21	NM_001293634	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
122288	chr19	49087271	49087700	+	0	NA	intron (NM_003089, intron 2 of 9)	intron (NM_003089, intron 2 of 9)	2034	NM_001301069	6625		NM_003089	ENSG00000104852	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein U1 subunit 70	protein-coding
174793	chr4	48045671	48045830	+	0	NA	Intergenic	Intergenic	28978	NM_207330	152519		NM_207330	ENSG00000163293	NIPAL1	NIPA3|NPAL1|SLC57A3	NIPA like domain containing 1	protein-coding
60441	chr13	41004701	41005580	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	14176	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
220842	chr8	103019171	103019330	+	0	NA	Intergenic	AluSz|SINE|Alu	-1833	NM_001695	528		NM_001695	ENSG00000155097	ATP6V1C1	ATP6C|ATP6D|VATC|Vma5	ATPase H+ transporting V1 subunit C1	protein-coding
83235	chr16	23849071	23849500	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	13302	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
99069	chr17	48946301	48946500	+	0	NA	Intergenic	MER51B|LTR|ERV1	-1558	NM_001317192	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
96628	chr17	40580871	40581600	+	0	NA	Intergenic	L2b|LINE|L2	-15763	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
55807	chr12	108730901	108732390	+	0	NA	promoter-TSS (NM_001276471)	promoter-TSS (NM_001276471)	-127	NM_014325	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
169085	chr3	154123021	154123280	+	0	NA	intron (NM_001251962, intron 2 of 14).2	intron (NM_001251962, intron 2 of 14).2	1760	NM_001251963	26084		NM_015595	ENSG00000114790	ARHGEF26	CSGEF|HMFN1864|SGEF	Rho guanine nucleotide exchange factor 26	protein-coding
118573	chr19	36271011	36271900	+	0	NA	Intergenic	SST1|Satellite|centr	-25527	NM_001366188	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
65266	chr14	49974001	49974200	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	7701	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
104679	chr17	81502521	81503480	+	0	NA	Intergenic	Intergenic	9799	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
234677	chrX	20260971	20261150	+	0	NA	intron (NM_004586, intron 1 of 21)	L1MA4A|LINE|L1	5849	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
33381	chr10	117537521	117537880	+	0	NA	intron (NR_002791, intron 2 of 3)	CpG	-4745	NM_001165924	2018		NM_004098	ENSG00000170370	EMX2	-	empty spiracles homeobox 2	protein-coding
160893	chr3	33791701	33792000	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-6721	NM_001256192	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
16368	chr1	154348401	154349200	+	0	NA	intron (NM_001367934, intron 26 of 26)	intron (NM_001367934, intron 26 of 26)	20002	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
93282	chr17	18108101	18108600	+	0	NA	promoter-TSS (NM_016239)	promoter-TSS (NM_016239)	-406	NM_016239	51168		NM_016239	ENSG00000091536	MYO15A	DFNB3|MYO15	myosin XVA	protein-coding
43450	chr11	77879321	77879780	+	0	NA	intron (NM_033547, intron 22 of 22)	intron (NM_033547, intron 22 of 22)	38412	NM_001363564	28971		NM_024684	ENSG00000087884	AAMDC	C11orf67|CK067|PTD015	adipogenesis associated Mth938 domain containing	protein-coding
15492	chr1	150393271	150393630	+	0	NA	intron (NM_015203, intron 1 of 10)	AluJb|SINE|Alu	29339	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
154828	chr22	37061701	37061900	+	0	NA	intron (NM_001282685, intron 6 of 6)	intron (NM_001282685, intron 6 of 6)	10064	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
39860	chr11	62400771	62400930	+	0	NA	Intergenic	Intergenic	-18183	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
235751	chrX	48953051	48954050	+	0	NA	intron (NM_001136159, intron 1 of 8)	MIR|SINE|MIR	4057	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
10546	chr1	66982671	66982900	+	0	NA	intron (NM_001077702, intron 14 of 15)	intron (NM_001077702, intron 14 of 15)	52529	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
162118	chr3	46930371	46931030	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	45801	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
23073	chr1	226642901	226643600	+	0	NA	intron (NM_002221, intron 4 of 7)	intron (NM_002221, intron 4 of 7)	31818	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
48382	chr12	9510521	9510780	+	0	NA	intron (NR_153413, intron 10 of 45)	intron (NR_153413, intron 10 of 45)	62363	NR_153413	408186		NR_153413		LOC408186	OVOS|OVOS1	alpha-2-macroglobulin like 1 pseudogene	pseudo
184449	chr5	100046451	100046550	+	0	NA	Intergenic	Intergenic	341754	NR_027503	100133050		NR_027503		GUSBP19	-	GUSB pseudogene 19	pseudo
205278	chr7	8303571	8303730	+	0	NA	intron (NR_125740, intron 3 of 5)	L1PA3|LINE|L1	-41038	NM_004968	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
17331	chr1	156475401	156476350	+	0	NA	intron (NM_001271629, intron 7 of 10)	intron (NM_001271629, intron 7 of 10)	14812	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
137226	chr2	191619071	191619230	+	0	NA	Intergenic	Intergenic	-58922	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
92611	chr17	10021351	10021450	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	4885	NM_001130831	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
174694	chr4	42398301	42398900	+	0	NA	intron (NM_001080505, intron 1 of 1)	CpG	1112	NM_001080505	152573		NM_001080505	ENSG00000178343	SHISA3	hShisa3	shisa family member 3	protein-coding
16677	chr1	155189271	155189700	+	0	NA	exon (NM_001371720, exon 6 of 12)	exon (NM_001371720, exon 6 of 12)	3424	NM_001204287	4582		NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|ADTKD2|CA 15-3|CD227|Ca15-3|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding
40694	chr11	64776071	64776380	+	0	NA	intron (NM_201995, intron 2 of 13)	intron (NM_201995, intron 2 of 13)	1536	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
217844	chr8	37735201	37735400	+	0	NA	non-coding (NR_125821, exon 2 of 2)	non-coding (NR_125821, exon 2 of 2)	-1334	NM_001362880	11160		NM_007175	ENSG00000147475	ERLIN2	C8orf2|Erlin-2|NET32|SPFH2|SPG18|SPG18A|SPG18B	ER lipid raft associated 2	protein-coding
232968	chr9	136965521	136966780	+	0	NA	Intergenic	L1MC3|LINE|L1	-3262	NR_157392	101928638		NM_001101674		LINC02692	C9orf141|PRR31	long intergenic non-protein coding RNA 2692	ncRNA
39401	chr11	60775421	60776200	+	0	NA	non-coding (NR_103481, exon 8 of 8)	non-coding (NR_103481, exon 8 of 8)	-9523	NM_206893	341116		NM_206893	ENSG00000172689	MS4A10	CD20L7|MS4A9	membrane spanning 4-domains A10	protein-coding
39895	chr11	62503671	62504030	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	41814	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
23286	chr1	228008401	228010130	+	0	NA	intron (NM_033131, intron 1 of 3)	intron (NM_033131, intron 1 of 3)	2267	NM_033131	89780		NM_033131	ENSG00000154342	WNT3A	-	Wnt family member 3A	protein-coding
159124	chr3	12626951	12627200	+	0	NA	intron (NM_001354691, intron 1 of 16)	intron (NM_001354691, intron 1 of 16)	36433	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
34464	chr10	132448401	132449630	+	0	NA	TTS (NR_149317)	TTS (NR_149317)	3826	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
9968	chr1	54808351	54808650	+	0	NA	intron (NM_001110533, intron 4 of 9)	L2a|LINE|L2	2437	NM_001110533	163747		NM_152607	ENSG00000162398	CIMAP2	C1orf177|LEM|LEXM	ciliary microtubule associated protein 2	protein-coding
180712	chr5	24272771	24273000	+	0	NA	Intergenic	Intergenic	321537	NR_131245	439936		NR_131245	ENSG00000248874	LINC02899	C5orf17	long intergenic non-protein coding RNA 2899	ncRNA
80662	chr16	3013971	3014830	+	0	NA	TTS (NM_021195)	TTS (NM_021195)	1477	NM_020982	9080		NM_020982	ENSG00000213937	CLDN9	DFNB116	claudin 9	protein-coding
48518	chr12	9953271	9953680	+	0	NA	promoter-TSS (NR_135047)	promoter-TSS (NR_135047)	-138	NR_135047	400002		NR_135047	ENSG00000231560	CLEC12A-AS1	-	CLEC12A antisense RNA 1	ncRNA
211340	chr7	104942571	104942900	+	0	NA	Intergenic	AluJr|SINE|Alu	-16090	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
45146	chr11	117199401	117199800	+	0	NA	5' UTR (NM_001001522, exon 1 of 5)	5' UTR (NM_001001522, exon 1 of 5)	230	NM_003186	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
143152	chr20	23994401	23994600	+	0	NA	Intergenic	Intergenic	-5721	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
27964	chr10	42367521	42368030	+	0	NA	intron (NR_024380, intron 1 of 2)	intron (NR_024380, intron 1 of 2)	270	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
62199	chr13	98265421	98265500	+	0	NA	intron (NM_001286839, intron 2 of 27)	AluYa5|SINE|Alu	56936	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
211875	chr7	111082521	111082780	+	0	NA	intron (NM_032549, intron 3 of 5)	UCON25|Unknown|Unknown	-8356	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
44179	chr11	96247551	96247650	+	0	NA	intron (NM_032427, intron 1 of 4)	L2a|LINE|L2	-93838	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
16924	chr1	155897051	155897930	+	0	NA	TTS (NM_006912)	TTS (NM_006912)	13428	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
86979	chr16	68209421	68209980	+	0	NA	intron (NM_173165, intron 9 of 9)	intron (NM_173165, intron 9 of 9)	23799	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
7205	chr1	32287501	32287700	+	0	NA	Intergenic	AluJb|SINE|Alu	-4483	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
81190	chr16	4480851	4480950	+	0	NA	intron (NM_001286268, intron 1 of 5).2	AluSq2|SINE|Alu	4502	NM_002134	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
87548	chr16	71926421	71926680	+	0	NA	intron (NM_014761, intron 9 of 9)	AluY|SINE|Alu	31019	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
12645	chr1	109241951	109242700	+	0	NA	Intergenic	Intergenic	-7214	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
28501	chr10	50106771	50106950	+	0	NA	intron (NM_001291398, intron 19 of 29)	MER39|LTR|ERV1	38906	NM_001005751	387680		NM_018232	ENSG00000099290	WASHC2A	FAM21A|FAM21B|bA56A21.1|bA98I6.1	WASH complex subunit 2A	protein-coding
207046	chr7	39589451	39590150	+	0	NA	intron (NM_001282446, intron 2 of 2)	intron (NM_001282446, intron 2 of 2)	23396	NM_001282446	57002		NM_020192	ENSG00000241127	YAE1	C7orf36|CIAB2|GK003|YAE1D1	YAE1 maturation factor of ABCE1	protein-coding
185345	chr5	126972301	126973180	+	0	NA	intron (NM_178450, intron 1 of 4)	intron (NM_178450, intron 1 of 4)	57818	NM_178450	115123		NM_178450	ENSG00000173926	MARCHF3	MARCH-III|MARCH3|RNF173	membrane associated ring-CH-type finger 3	protein-coding
67864	chr14	74243771	74244750	+	0	NA	intron (NM_182894, intron 2 of 4)	intron (NM_182894, intron 2 of 4)	4811	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
150512	chr21	42880801	42881000	+	0	NA	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-1311	NM_001260476	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
222318	chr8	133500901	133501680	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	70597	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
185870	chr5	132635901	132636100	+	0	NA	intron (NR_132124, intron 2 of 2)	intron (NR_132124, intron 2 of 2)	5790	NR_132124	101927761		NR_132124	ENSG00000223442	TH2LCRR	TH2-LCR	T helper type 2 locus control region associated RNA	ncRNA
192403	chr6	24839601	24840380	+	0	NA	3' UTR (NM_001286446, exon 14 of 14)	3' UTR (NM_001286446, exon 14 of 14)	37280	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
110592	chr19	2168101	2169730	+	0	NA	intron (NM_032482, intron 1 of 27)	intron (NM_032482, intron 1 of 27)	4982	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
135032	chr2	156317801	156319200	+	0	NA	Intergenic	Intergenic	14221	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
81165	chr16	4424271	4424430	+	0	NA	Intergenic	AluSg|SINE|Alu	-1455	NM_001286516	9093		NM_005147	ENSG00000103423	DNAJA3	HCA57|TID1|Tid1-L|Tid1-S|hTID-1	DnaJ heat shock protein family (Hsp40) member A3	protein-coding
232996	chr9	136999471	136999650	+	0	NA	Intergenic	Intergenic	-2992	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
52218	chr12	54383401	54383600	+	0	NA	intron (NM_001290002, intron 3 of 8)	L2|LINE|L2	1233	NM_001290001	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
168872	chr3	152296571	152297750	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-1854	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
133708	chr2	127354671	127354830	+	0	NA	intron (NM_001371911, intron 1 of 16)	L1MC2|LINE|L1	-11521	NM_006609	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
119919	chr19	41744651	41744950	+	0	NA	Intergenic	Intergenic	-10730	NM_002483	4680		NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA|NCA-50/90	CEA cell adhesion molecule 6	protein-coding
159999	chr3	18369451	18369950	+	0	NA	intron (NM_001322873, intron 9 of 10)	intron (NM_001322873, intron 9 of 10)	55639	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
5035	chr1	24513421	24513700	+	0	NA	promoter-TSS (NM_001251985)	promoter-TSS (NM_001251985)	-754	NM_001251980	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
20210	chr1	193126921	193127380	+	0	NA	intron (NM_024529, intron 2 of 16)	AluJb|SINE|Alu	5119	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
146824	chr20	51401471	51401800	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	51342	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
72223	chr15	30191801	30194330	+	0	NA	Intergenic	Intergenic	-2971	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
62027	chr13	87673851	87673950	+	0	NA	intron (NM_001384610, intron 1 of 1)	intron (NM_001384610, intron 1 of 1)	676	NM_001384610	26050		NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	SLIT and NTRK like family member 5	protein-coding
118240	chr19	35215971	35216380	+	0	NA	Intergenic	AluSz|SINE|Alu	12550	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
127594	chr2	42813821	42814080	+	0	NA	Intergenic	Intergenic	-21367	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
164097	chr3	56596221	56596900	+	0	NA	intron (NM_001353148, intron 10 of 17)	L1MA4A|LINE|L1	39385	NM_001141947	285331		NM_001012506	ENSG00000180376	CCDC66	-	coiled-coil domain containing 66	protein-coding
145173	chr20	38861221	38861630	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	55728	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
66134	chr14	60166201	60166800	+	0	NA	intron (NM_001322280, intron 1 of 6)	intron (NM_001322280, intron 1 of 6)	-1007	NM_001322282	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
226503	chr9	71782871	71784180	+	0	NA	Intergenic	Intergenic	-15012	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
27328	chr10	30529321	30530450	+	0	NA	Intergenic	Intergenic	95239	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
229700	chr9	124764651	124765050	+	0	NA	intron (NM_001278546, intron 1 of 9)	intron (NM_001278546, intron 1 of 9)	6461	NM_033334	2649		NM_001489	ENSG00000148200	NR6A1	CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR	nuclear receptor subfamily 6 group A member 1	protein-coding
141056	chr2	238254251	238254630	+	0	NA	intron (NM_022817, intron 18 of 22)	intron (NM_022817, intron 18 of 22)	-14402	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
232640	chr9	136469251	136469550	+	0	NA	intron (NM_014866, intron 4 of 31)	intron (NM_014866, intron 4 of 31)	-13610	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
32413	chr10	102452851	102453580	+	0	NA	intron (NR_038937, intron 4 of 4)	intron (NR_038937, intron 4 of 4)	-1672	NM_001363580	79946		NM_024886	ENSG00000120055	C10orf95	-	chromosome 10 open reading frame 95	protein-coding
132146	chr2	101729571	101730200	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	31620	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
29255	chr10	69110471	69110630	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-13603	NM_001035260	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
199235	chr6	111824001	111824750	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	48696	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
219012	chr8	63199751	63200300	+	0	NA	intron (NM_001277815, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	31022	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
56221	chr12	111648171	111648330	+	0	NA	intron (NM_006768, intron 11 of 11)	AluSc|SINE|Alu	37706	NM_006768	8315		NM_006768	ENSG00000089234	BRAP	BRAP2|IMP|RNF52	BRCA1 associated protein	protein-coding
99603	chr17	50540971	50541130	+	0	NA	exon (NM_017957, exon 7 of 10)	exon (NM_017957, exon 7 of 10)	-2296	NR_135675	105371824		NR_135675	ENSG00000250286	LOC105371824	-	uncharacterized LOC105371824	ncRNA
198925	chr6	110296471	110296830	+	0	NA	intron (NM_001123364, intron 4 of 4)	intron (NM_001123364, intron 4 of 4)	33408	NM_001354595	728464		NM_001123364	ENSG00000053328	METTL24	C6orf186	methyltransferase like 24	protein-coding
13700	chr1	116758251	116758900	+	0	NA	intron (NM_001328609, intron 2 of 4)	intron (NM_001328609, intron 2 of 4)	4145	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
213722	chr7	140297321	140297580	+	0	NA	Intergenic	AluJb|SINE|Alu	101080	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
77020	chr15	78619951	78620550	+	0	NA	intron (NR_046313, intron 1 of 7)	CpG	746	NM_000743	1136		NM_000743	ENSG00000080644	CHRNA3	BAIPRCK|LNCR2|NACHRA3|PAOD2	cholinergic receptor nicotinic alpha 3 subunit	protein-coding
24658	chr1	246971321	246971600	+	0	NA	intron (NM_001204221, intron 4 of 5)	LTR13_|LTR|ERVK	36597	NR_037892	57116		NM_020394	ENSG00000197472	ZNF695	SBZF3	zinc finger protein 695	protein-coding
105937	chr18	3595501	3596200	+	0	NA	intron (NR_024101, intron 2 of 2)	intron (NR_024101, intron 2 of 2)	1736	NR_024101	649446		NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
74762	chr15	63234321	63235380	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	-42700	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
117829	chr19	30719571	30719730	+	0	NA	Intergenic	CpG	347266	NM_001352260	9745		NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
235939	chrX	53224821	53226280	+	0	NA	promoter-TSS (NM_001353978)	promoter-TSS (NM_001353978)	-128	NM_001353984	8242		NM_004187	ENSG00000126012	KDM5C	DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169	lysine demethylase 5C	protein-coding
144986	chr20	37361501	37361700	+	0	NA	intron (NM_198291, intron 1 of 13)	intron (NM_198291, intron 1 of 13)	15460	NM_198291	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
203405	chr7	103671	104830	+	0	NA	Intergenic	L1MB7|LINE|L1	45188	NR_134325	102723672		NR_134325		LINC03015	-	long intergenic non-protein coding RNA 3015	ncRNA
135298	chr2	160265771	160266480	+	0	NA	intron (NR_103775, intron 1 of 1)	L1MC4|LINE|L1	5770	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
64612	chr14	30656021	30656850	+	0	NA	intron (NM_001257376, intron 8 of 22)	MER20|DNA|hAT-Charlie	34116	NM_001257376	23256		NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
63862	chr14	21711401	21712030	+	0	NA	Intergenic	Intergenic	-40698	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
17639	chr1	157135651	157135750	+	0	NA	exon (NM_001145312, exon 3 of 5)	exon (NM_001145312, exon 3 of 5)	2695	NM_001145312	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
95886	chr17	38880701	38880900	+	0	NA	intron (NM_001271608, intron 2 of 5)	intron (NM_001271608, intron 2 of 5)	10742	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
75931	chr15	70223171	70223330	+	0	NA	Intergenic	L2a|LINE|L2	-125333	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
196659	chr6	44314521	44314780	+	0	NA	Intergenic	AluSp|SINE|Alu	-1303	NM_020745	57505		NM_020745	ENSG00000124608	AARS2	AARSL|COXPD8|LKENP|MT-ALARS|MTALARS	alanyl-tRNA synthetase 2, mitochondrial	protein-coding
71939	chr15	23041051	23041150	+	0	NA	Intergenic	Intergenic	-1427	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
175078	chr4	54095201	54095600	+	0	NA	Intergenic	Intergenic	-4763	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
70773	chr14	103501101	103501300	+	0	NA	intron (NM_001128918, intron 17 of 17)	intron (NM_001128918, intron 17 of 17)	21630	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
139181	chr2	219216421	219216850	+	0	NA	intron (NM_001349828, intron 2 of 17)	intron (NM_001349828, intron 2 of 17)	2323	NM_005689	10058		NM_005689	ENSG00000115657	ABCB6	ABC|LAN|MTABC3|PRP|umat	ATP binding cassette subfamily B member 6 (LAN blood group)	protein-coding
103245	chr17	77516771	77517130	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-10051	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
92319	chr17	8133871	8135130	+	0	NA	Intergenic	AluSx|SINE|Alu	-10394	NM_001165967	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
38248	chr11	36505721	36505980	+	0	NA	intron (NM_145803, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	4422	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
3306	chr1	15362171	15362330	+	0	NA	intron (NM_052929, intron 21 of 30)	intron (NM_052929, intron 21 of 30)	-18367	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
82790	chr16	21456401	21457500	+	0	NA	intron (NR_027155, intron 19 of 28)	intron (NR_027155, intron 19 of 28)	-22495	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
142560	chr20	5202671	5202830	+	0	NA	Intergenic	L2a|LINE|L2	75742	NM_003818	8760		NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
150716	chr21	43732921	43734830	+	0	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	-7611	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
110796	chr19	2455771	2456300	+	0	NA	intron (NM_032737, intron 1 of 11)	CpG	924	NM_032737	84823		NM_032737	ENSG00000176619	LMNB2	EPM9|LAMB2|LMN2|MCPH27	lamin B2	protein-coding
83058	chr16	22333501	22333900	+	0	NA	exon (NM_001258034, exon 20 of 20).2	exon (NM_001258034, exon 20 of 20).2	36291	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
152561	chr22	21031871	21032830	+	0	NA	intron (NM_004173, intron 1 of 4)	CpG	211	NM_004173	6545		NM_004173	ENSG00000099960	SLC7A4	CAT-4|CAT4|HCAT3|VH	solute carrier family 7 member 4	protein-coding
169553	chr3	170198071	170198230	+	0	NA	Intergenic	AluY|SINE|Alu	-16417	NM_024947	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
166750	chr3	122074851	122075180	+	0	NA	intron (NM_001206925, intron 1 of 5)	intron (NM_001206925, intron 1 of 5)	-2834	NM_006889	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
218400	chr8	47256021	47256480	+	0	NA	Intergenic	Intergenic	-4628	NM_001352957	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
196909	chr6	52364571	52365180	+	0	NA	intron (NM_133367, intron 1 of 1)	Tigger2b_Pri|DNA|TcMar-Tigger	2724	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
82765	chr16	21428271	21428800	+	0	NA	Intergenic	AluY|SINE|Alu	-3157	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
142689	chr20	8017021	8017400	+	0	NA	intron (NM_021156, intron 1 of 7)	intron (NM_021156, intron 1 of 7)	2551	NM_021156	56255		NM_021156	ENSG00000125827	TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin related transmembrane protein 4	protein-coding
71288	chr14	105283551	105284050	+	0	NA	intron (NM_001242788, intron 1 of 16)	intron (NM_001242788, intron 1 of 16)	-16974	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
167140	chr3	127791271	127791430	+	0	NA	intron (NM_001003794, intron 2 of 7)	intron (NM_001003794, intron 2 of 7)	31532	NM_007283	11343		NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
112467	chr19	6390221	6390480	+	0	NA	promoter-TSS (NR_106945)	promoter-TSS (NR_106945)	-647	NR_106945	102465533		NR_106945	ENSG00000274390	MIR6885	hsa-mir-6885	microRNA 6885	ncRNA
25882	chr10	11260871	11262000	+	0	NA	intron (NM_001326346, intron 4 of 11)	intron (NM_001326346, intron 4 of 11)	83239	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
98701	chr17	47940051	47940400	+	0	NA	intron (NR_103857, intron 1 of 2)	intron (NR_103857, intron 1 of 2)	1179	NR_103857	100506325		NR_103856	ENSG00000234494	SP2-AS1	-	SP2 antisense RNA 1	ncRNA
142717	chr20	8721171	8721430	+	0	NA	intron (NM_015192, intron 14 of 31)	intron (NM_015192, intron 14 of 31)	-109885	NR_004386	26767		NR_004386	ENSG00000201348	RNU105B	105B|E1-2	RNA, U105B small nucleolar	snoRNA
172126	chr4	1176571	1178230	+	0	NA	intron (NM_001199021, intron 2 of 7)	intron (NM_001199021, intron 2 of 7)	-4189	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
87306	chr16	70173271	70173830	+	0	NA	promoter-TSS (NR_126007)	promoter-TSS (NR_126007)	-102	NR_126007	400541		NR_126007	ENSG00000247228	LOC400541	-	uncharacterized LOC400541	ncRNA
111594	chr19	4090901	4091400	+	0	NA	intron (NM_030662, intron 10 of 10)	MER20|DNA|hAT-Charlie	-24251	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
151514	chr21	46428051	46428350	+	0	NA	intron (NM_006031, intron 34 of 46)	intron (NM_006031, intron 34 of 46)	-30691	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
147336	chr20	58208321	58208750	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	20118	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
164373	chr3	58206571	58206750	+	0	NA	intron (NM_004944, intron 2 of 7)	intron (NM_004944, intron 2 of 7)	4312	NM_004944	1776		NM_004944	ENSG00000163687	DNASE1L3	D3|DHP2|DNAS1L3|LSD|SLEB16	deoxyribonuclease 1L3	protein-coding
44867	chr11	114189051	114189350	+	0	NA	intron (NM_001354751, intron 4 of 6)	L1MB7|LINE|L1	-68606	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
74566	chr15	60536051	60536550	+	0	NA	intron (NM_134261, intron 2 of 10)	MIR|SINE|MIR	56226	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
33689	chr10	120508471	120508630	+	0	NA	intron (NM_001318169, intron 2 of 2)	intron (NM_001318169, intron 2 of 2)	51323	NM_001030059	196051		NM_001030059	ENSG00000203805	PLPP4	DPPL2|PPAPDC1|PPAPDC1A	phospholipid phosphatase 4	protein-coding
43617	chr11	83185601	83185800	+	0	NA	non-coding (NR_133914, exon 1 of 1)	non-coding (NR_133914, exon 1 of 1)	1784	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
115869	chr19	16560701	16560900	+	0	NA	intron (NM_024881, intron 4 of 5)	AluSx|SINE|Alu	11615	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
19021	chr1	169661451	169662030	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-31616	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
121829	chr19	48103121	48103480	+	0	NA	intron (NM_003706, intron 4 of 16)	intron (NM_003706, intron 4 of 16)	7517	NM_003706	8605		NM_003706	ENSG00000105499	PLA2G4C	CPLA2-gamma	phospholipase A2 group IVC	protein-coding
104697	chr17	81533101	81533300	+	0	NA	intron (NM_012418, intron 1 of 4)	intron (NM_012418, intron 1 of 4)	4823	NM_012418	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
234699	chrX	20432821	20433300	+	0	NA	Intergenic	Intergenic	-166151	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
26940	chr10	26489701	26489900	+	0	NA	intron (NM_019043, intron 2 of 14)	AluSx1|SINE|Alu	51459	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
58443	chr12	132062351	132062850	+	0	NA	exon (NM_015409, exon 47 of 53)	exon (NM_015409, exon 47 of 53)	-21683	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
213526	chr7	139082021	139082750	+	0	NA	intron (NM_020119, intron 3 of 12)	L1MB3|LINE|L1	27335	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
77875	chr15	88911851	88912380	+	0	NA	intron (NM_001114614, intron 1 of 6)	intron (NM_001114614, intron 1 of 6)	1053	NM_001310321	4240		NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule EGF and factor V/VIII domain containing	protein-coding
158584	chr3	4721871	4722230	+	0	NA	intron (NM_001168272, intron 39 of 60)	intron (NM_001168272, intron 39 of 60)	29540	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
106833	chr18	24016001	24017280	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-1180	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
9882	chr1	54337901	54338300	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	68294	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
224173	chr9	5301251	5301830	+	0	NA	intron (NM_134441, intron 1 of 1)	intron (NM_134441, intron 1 of 1)	2688	NM_001329191	6019		NM_005059	ENSG00000107014	RLN2	H2|H2-RLX|RLXH2|bA12D24.1.1|bA12D24.1.2	relaxin 2	protein-coding
237485	chrX	119869401	119870000	+	0	NA	TTS (NM_006978)	TTS (NM_006978)	2033	NM_006978	7737		NM_006978	ENSG00000125352	RNF113A	Cwc24|RNF113|TTD5|ZNF183	ring finger protein 113A	protein-coding
164079	chr3	55485101	55485400	+	0	NA	promoter-TSS (NM_001377272)	promoter-TSS (NM_001377272)	35	NM_001377271	7474		NM_003392	ENSG00000114251	WNT5A	hWNT5A	Wnt family member 5A	protein-coding
66840	chr14	64912151	64912780	+	0	NA	Intergenic	MIRc|SINE|MIR	-1896	NM_001202559	100529261		NM_001202558	ENSG00000125954	CHURC1-FNTB	FNTB|FTase-beta	CHURC1-FNTB readthrough	protein-coding
115735	chr19	16263101	16263700	+	0	NA	Intergenic	Intergenic	-61426	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
136880	chr2	189179521	189179780	+	0	NA	5' UTR (NM_000393, exon 1 of 54)	5' UTR (NM_000393, exon 1 of 54)	111	NM_000393	1290		NM_000393	ENSG00000204262	COL5A2	EDSC|EDSCL2	collagen type V alpha 2 chain	protein-coding
10308	chr1	64863951	64864550	+	0	NA	intron (NM_001321857, intron 8 of 24)	intron (NM_001321857, intron 8 of 24)	102299	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
150133	chr21	37668551	37668650	+	0	NA	intron (NM_002240, intron 3 of 3)	MLT1B|LTR|ERVL-MaLR	247857	NM_002240	3763		NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2	potassium inwardly rectifying channel subfamily J member 6	protein-coding
109418	chr19	693251	694280	+	0	NA	intron (NM_214710, intron 2 of 4)	AluY|SINE|Alu	1687	NM_001308209	400668		NM_214710	ENSG00000185198	PRSS57	NSP4|PRSSL1|UNQ782	serine protease 57	protein-coding
188784	chr5	157816701	157817500	+	0	NA	intron (NM_014666, intron 2 of 11)	intron (NM_014666, intron 2 of 11)	42045	NM_014666	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
178541	chr4	151032201	151032930	+	0	NA	Intergenic	AluSx3|SINE|Alu	-16838	NM_001367550	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
47230	chr12	953771	953930	+	0	NA	intron (NM_001297419, intron 1 of 11)	L1ME5|LINE|L1	-4128	NR_123713	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
84673	chr16	30759721	30759980	+	0	NA	TTS (NM_001195620)	TTS (NM_001195620)	-1762	NM_001207034	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
119852	chr19	41423921	41424650	+	0	NA	intron (NM_001164783, intron 8 of 8)	intron (NM_001164783, intron 8 of 8)	3708	NM_001385648	374907		NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
65982	chr14	57262271	57262430	+	0	NA	intron (NM_006544, intron 1 of 17)	MIR|SINE|MIR	6555	NM_006544	10640		NM_006544	ENSG00000070367	EXOC5	HSEC10|PRO1912|SEC10|SEC10L1|SEC10P	exocyst complex component 5	protein-coding
87455	chr16	71367471	71367650	+	0	NA	intron (NM_007088, intron 1 of 8)	intron (NM_007088, intron 1 of 8)	8837	NR_027910	794		NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
225986	chr9	41266501	41267150	+	0	NA	Intergenic	CpG	-32990	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
42033	chr11	67434301	67435050	+	0	NA	TTS (NM_020441)	TTS (NM_020441)	3007	NM_005608	5790		NM_005608	ENSG00000213402	PTPRCAP	CD45-AP|LPAP	protein tyrosine phosphatase receptor type C associated protein	protein-coding
237618	chrX	124006121	124006830	+	0	NA	intron (NM_001282418, intron 2 of 33)	AluY|SINE|Alu	44769	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
53519	chr12	66899771	66900130	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-95681	NM_001379348	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
93966	chr17	21550021	21550280	+	0	NA	intron (NR_160801, intron 1 of 1)	intron (NR_160801, intron 1 of 1)	1528	NR_160801	339263		NM_001113434	ENSG00000212719	LINC02693	C17orf51	long intergenic non-protein coding RNA 2693	ncRNA
162220	chr3	47040521	47040980	+	0	NA	intron (NR_146158, intron 18 of 21)	AluJr|SINE|Alu	29208	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
97284	chr17	43124321	43124720	+	0	NA	promoter-TSS (NM_007298)	promoter-TSS (NM_007298)	-405	NM_007298	672		NM_007294	ENSG00000012048	BRCA1	BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53	BRCA1 DNA repair associated	protein-coding
41005	chr11	65417321	65418300	+	0	NA	Intergenic	Intergenic	-4988	NR_028272	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
181714	chr5	50669721	50670180	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	2536	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
109685	chr19	1037821	1039060	+	0	NA	3' UTR (NM_001303499, exon 7 of 7)	3' UTR (NM_001303499, exon 7 of 7)	-1667	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
215107	chr7	155300721	155301350	+	0	NA	intron (NM_198337, intron 2 of 3)	intron (NM_198337, intron 2 of 3)	3157	NM_005542	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
175934	chr4	80422951	80423750	+	0	NA	intron (NM_001206997, intron 2 of 6)	intron (NM_001206997, intron 2 of 6)	87620	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
188683	chr5	157277221	157277950	+	0	NA	intron (NM_014376, intron 1 of 30)	intron (NM_014376, intron 1 of 30)	8261	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
182761	chr5	68297271	68297630	+	0	NA	exon (NM_181504, exon 10 of 10)	exon (NM_181504, exon 10 of 10)	4873	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
177246	chr4	108649851	108651180	+	0	NA	promoter-TSS (NM_001267817)	promoter-TSS (NM_001267817)	-70	NM_001267817	58505		NM_021227	ENSG00000198856	OSTC	DC2	oligosaccharyltransferase complex non-catalytic subunit	protein-coding
135266	chr2	159755501	159756400	+	0	NA	intron (NM_001376253, intron 5 of 7)	intron (NM_001376253, intron 5 of 7)	21986	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
7039	chr1	31934551	31935780	+	0	NA	intron (NM_001369859, intron 1 of 6)	intron (NM_001369859, intron 1 of 6)	2653	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
221844	chr8	128241421	128241680	+	0	NA	Intergenic	Intergenic	91434	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
185608	chr5	131420001	131420630	+	0	NA	Intergenic	L1MEc|LINE|L1	156262	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
233025	chr9	137025551	137026180	+	0	NA	intron (NM_212533, intron 1 of 48)	intron (NM_212533, intron 1 of 48)	-1599	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
107788	chr18	51130821	51131580	+	0	NA	Intergenic	Intergenic	66481	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
79330	chr16	575101	575300	+	0	NA	intron (NM_004204, intron 2 of 10)	intron (NM_004204, intron 2 of 10)	5232	NM_004204	9091		NM_004204	ENSG00000007541	PIGQ	DEE77|EIEE77|GPI1|GPIBD19|MCAHS4|c407A10.1	phosphatidylinositol glycan anchor biosynthesis class Q	protein-coding
140418	chr2	233107251	233107350	+	0	NA	intron (NM_001017915, intron 2 of 26).2	LTR16A2|LTR|ERVL	46958	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
87937	chr16	79370451	79371380	+	0	NA	Intergenic	L2b|LINE|L2	229822	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
86602	chr16	67289701	67291150	+	0	NA	TTS (NM_001129729)	TTS (NM_001129729)	10893	NM_001129729	25894		NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
110768	chr19	2392651	2393300	+	0	NA	intron (NM_182973, intron 2 of 17)	LTR12C|LTR|ERV1	-3202	NR_169739	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
154	chr1	532171	532330	+	0	NA	Intergenic	Intergenic	-36805	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
10742	chr1	76268901	76269650	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	194529	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
180831	chr5	32533551	32534130	+	0	NA	Intergenic	Intergenic	-51717	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
102976	chr17	76721021	76721480	+	0	NA	intron (NM_015167, intron 4 of 5)	LFSINE_Vert|SINE|tRNA	-4791	NM_001378349	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
23962	chr1	235157571	235157900	+	0	NA	intron (NR_144491, intron 2 of 9)	intron (NR_144491, intron 2 of 9)	3515	NR_027762	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
126470	chr2	28363921	28364350	+	0	NA	Intergenic	Intergenic	-28723	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
227340	chr9	89460321	89460830	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	19315	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
181613	chr5	43660671	43660830	+	0	NA	intron (NM_182977, intron 17 of 21)	MSTA|LTR|ERVL-MaLR	-57520	NR_073113	100652772		NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
18585	chr1	165376221	165376980	+	0	NA	Intergenic	Intergenic	-19885	NM_177398	4009		NM_177398	ENSG00000162761	LMX1A	DFNA7|LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding
61799	chr13	75481371	75481990	+	0	NA	exon (NM_001286659, exon 1 of 19)	exon (NM_001286659, exon 1 of 19)	488	NM_001286659	9882		NM_014832	ENSG00000136111	TBC1D4	AS160|NIDDM5	TBC1 domain family member 4	protein-coding
227875	chr9	93673371	93673930	+	0	NA	exon (NM_005392, exon 18 of 22)	exon (NM_005392, exon 18 of 22)	78809	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
185958	chr5	133053571	133053730	+	0	NA	intron (NM_002154, intron 1 of 18)	intron (NM_002154, intron 1 of 18)	1637	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
65791	chr14	54606171	54606530	+	0	NA	intron (NM_015589, intron 2 of 12)	intron (NM_015589, intron 2 of 12)	38738	NM_001161576	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
182490	chr5	62578401	62578870	+	0	NA	promoter-TSS (NR_073584)	promoter-TSS (NR_073584)	-100	NR_073584	101180901		NR_073584	ENSG00000086200	IPO11-LRRC70	-	IPO11-LRRC70 readthrough	ncRNA
180516	chr5	14403051	14403800	+	0	NA	intron (NR_134469, intron 31 of 56)	(TGG)n|Simple_repeat|Simple_repeat	-60558	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
29038	chr10	67697701	67697990	+	0	NA	Intergenic	Intergenic	-1650	NM_013266	29119		NM_013266	ENSG00000183230	CTNNA3	ARVD13|VR22	catenin alpha 3	protein-coding
159977	chr3	17841071	17841480	+	0	NA	Intergenic	Intergenic	98331	NR_135536	105376975		NR_135536	ENSG00000286352	LOC105376975	-	uncharacterized LOC105376975	ncRNA
112838	chr19	7532001	7532400	+	0	NA	intron (NM_020533, intron 12 of 13)	intron (NM_020533, intron 12 of 13)	-1964	NM_006702	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
11293	chr1	89265401	89265800	+	0	NA	intron (NM_001134486, intron 6 of 10)	AluY|SINE|Alu	7260	NM_001134486	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
5209	chr1	24973271	24973830	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-8540	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
140685	chr2	234164351	234164980	+	0	NA	Intergenic	Intergenic	113963	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
54571	chr12	92363621	92364450	+	0	NA	Intergenic	Intergenic	-57496	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
51546	chr12	52390951	52391250	+	0	NA	Intergenic	L2b|LINE|L2	-5448	NM_033045	3890		NM_033045	ENSG00000161849	KRT84	HB4|KRTHB4	keratin 84	protein-coding
102588	chr17	75892301	75893200	+	0	NA	intron (NM_173547, intron 2 of 5)	intron (NM_173547, intron 2 of 5)	4201	NM_001256124	201292		NM_173547	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
184839	chr5	111508501	111508700	+	0	NA	intron (NR_131754, intron 1 of 4)	intron (NR_131754, intron 1 of 4)	-3626	NR_040093	100505678		NR_040093	ENSG00000246859	STARD4-AS1	-	STARD4 antisense RNA 1	ncRNA
37835	chr11	33266501	33266930	+	0	NA	intron (NM_001278162, intron 1 of 15)	AluJb|SINE|Alu	8384	NM_001278162	10114		NM_005734	ENSG00000110422	HIPK3	DYRK6|FIST3|PKY|YAK1	homeodomain interacting protein kinase 3	protein-coding
132222	chr2	102256121	102256500	+	0	NA	Intergenic	Intergenic	-55192	NM_001282408	9173		NM_003856	ENSG00000115602	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor like 1	protein-coding
224720	chr9	21551521	21551780	+	0	NA	intron (NR_152877, intron 1 of 3)	intron (NR_152877, intron 1 of 3)	8148	NR_027054	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
9352	chr1	46857701	46857900	+	0	NA	intron (NR_002788, intron 9 of 11)	intron (NR_002788, intron 9 of 11)	42675	NR_002788	163720		NM_173534	ENSG00000290456	CYP4Z2P	-	cytochrome P450 family 4 subfamily Z member 2, pseudogene	pseudo
52142	chr12	54219771	54220530	+	0	NA	Intergenic	Intergenic	11326	NR_039851	100616400		NR_039851	ENSG00000283803	MIR3198-2	mir-3198-2	microRNA 3198-2	ncRNA
154565	chr22	36255151	36255680	+	0	NA	intron (NM_001136541, intron 2 of 4)	intron (NM_001136541, intron 2 of 4)	2282	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
187561	chr5	142785951	142786050	+	0	NA	intron (NM_001349547, intron 1 of 21)	AluJr|SINE|Alu	14773	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
135784	chr2	169768351	169769000	+	0	NA	Intergenic	(GCTCCG)n|Simple_repeat|Simple_repeat	-30196	NM_003142	6741		NM_003142	ENSG00000138385	SSB	LARP3|La|La/SSB	small RNA binding exonuclease protection factor La	protein-coding
201708	chr6	149710921	149711580	+	0	NA	intron (NM_001350339, intron 1 of 9)	MLT1J2-int|LTR|ERVL-MaLR	5175	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
67	chr1	280571	280730	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-74053	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
218622	chr8	56093651	56094030	+	0	NA	Intergenic	Intergenic	19248	NR_149110	105375847		NR_149110	ENSG00000253603	CERNA3	CTA	competing endogenous lncRNA 3 for miR-645	ncRNA
217434	chr8	28492651	28493030	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-1365	NM_145866	7976		NM_017412	ENSG00000104290	FZD3	Fz-3	frizzled class receptor 3	protein-coding
149945	chr21	36326251	36326700	+	0	NA	intron (NM_001320445, intron 1 of 15)	AluSz|SINE|Alu	6278	NM_015358	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
193818	chr6	31472451	31472650	+	0	NA	TTS (NR_002812)	TTS (NR_002812)	1321	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
19391	chr1	174061471	174061630	+	0	NA	Intergenic	Ricksha_0|DNA|MULE-MuDR	-39193	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
58819	chr12	132830121	132830430	+	0	NA	Intergenic	AluSx|SINE|Alu	-1406	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
200195	chr6	131063001	131063900	+	0	NA	promoter-TSS (NM_001350303)	promoter-TSS (NM_001350303)	-128	NM_001350303	2037		NM_001431	ENSG00000079819	EPB41L2	4.1-G|4.1G	erythrocyte membrane protein band 4.1 like 2	protein-coding
35748	chr11	2137151	2138150	+	0	NA	promoter-TSS (NM_001291861)	promoter-TSS (NM_001291861)	-362	NM_001291861	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
205713	chr7	23462271	23462530	+	0	NA	intron (NM_006547, intron 2 of 14)	AluY|SINE|Alu	8091	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
166882	chr3	123991721	123992680	+	0	NA	promoter-TSS (NR_133919)	promoter-TSS (NR_133919)	-30	NM_001317774	54763		NM_017578	ENSG00000065371	ROPN1	CT91|ODF6|RHPNAP1|ROPN1A|ropporin	rhophilin associated tail protein 1	protein-coding
180337	chr5	6660371	6660530	+	0	NA	intron (NM_001047, intron 3 of 4)	intron (NM_001047, intron 3 of 4)	27010	NM_001324322	6715		NM_001047	ENSG00000145545	SRD5A1	S5AR 1	steroid 5 alpha-reductase 1	protein-coding
202924	chr6	160347971	160348330	+	0	NA	promoter-TSS (NM_021977)	promoter-TSS (NM_021977)	-228	NM_021977	6581		NM_021977	ENSG00000146477	SLC22A3	EMT|EMTH|OCT3	solute carrier family 22 member 3	protein-coding
188266	chr5	151091971	151092130	+	0	NA	Intergenic	L2c|LINE|L2	-4365	NM_001252390	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
138608	chr2	208359121	208359900	+	0	NA	promoter-TSS (NM_001371905)	promoter-TSS (NM_001371905)	-182	NR_163993	5746		NM_005048	ENSG00000144407	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
225578	chr9	36041321	36041880	+	0	NA	intron (NM_021111, intron 1 of 20)	intron (NM_021111, intron 1 of 20)	4687	NM_021111	8434		NM_021111	ENSG00000122707	RECK	ST15	reversion inducing cysteine rich protein with kazal motifs	protein-coding
36165	chr11	3157351	3158380	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	7445	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
131405	chr2	96274221	96275350	+	0	NA	TTS (NM_004804)	TTS (NM_004804)	8560	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
146108	chr20	47845551	47845850	+	0	NA	Intergenic	Intergenic	-59084	NM_198596	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
158036	chr22	49930851	49931550	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	12566	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
220432	chr8	100300571	100301500	+	0	NA	5' UTR (NM_001353837, exon 1 of 10)	5' UTR (NM_001353837, exon 1 of 10)	1158	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
135683	chr2	168705601	168705800	+	0	NA	intron (NM_203463, intron 6 of 9)	AmnSINE1|SINE|5S-Deu-L2	80729	NR_045786	100861402		NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
212208	chr7	118215501	118215780	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-9064	NM_019644	56311		NM_019644	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
208890	chr7	73842001	73843000	+	0	NA	promoter-TSS (NM_152559)	promoter-TSS (NM_152559)	16	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
154472	chr22	35575501	35575700	+	0	NA	Intergenic	Intergenic	34769	NM_014310	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
100945	chr17	64484221	64485000	+	0	NA	intron (NM_007215, intron 5 of 7)	L2a|LINE|L2	12444	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
13885	chr1	119275371	119275630	+	0	NA	non-coding (NR_125975, exon 7 of 7)	non-coding (NR_125975, exon 7 of 7)	-52752	NR_146623	105378934		NR_146623	ENSG00000232650	LINC01780	-	long intergenic non-protein coding RNA 1780	ncRNA
72502	chr15	33104351	33104650	+	0	NA	intron (NM_001277313, intron 4 of 20)	intron (NM_001277313, intron 4 of 20)	-36326	NM_001103184	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
236304	chrX	68462571	68463020	+	0	NA	Intergenic	AluSz|SINE|Alu	-29300	NM_002547	4983		NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|MRXSBL|OPN1	oligophrenin 1	protein-coding
134018	chr2	131039101	131039300	+	0	NA	intron (NM_001375902, intron 3 of 10)	intron (NM_001375902, intron 3 of 10)	53962	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
36190	chr11	3341301	3341530	+	0	NA	Intergenic	Intergenic	37731	NM_007152	7748		NM_007152	ENSG00000005801	ZNF195	HRF1|ZNFP104	zinc finger protein 195	protein-coding
138958	chr2	218261851	218262500	+	0	NA	5' UTR (NM_001077191, exon 2 of 2)	5' UTR (NM_001077191, exon 2 of 2)	1160	NM_170699	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
24857	chr10	513451	513750	+	0	NA	intron (NM_014974, intron 1 of 36)	intron (NM_014974, intron 1 of 36)	-114964	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
71106	chr14	104891901	104892300	+	0	NA	intron (NM_001112726, intron 13 of 18)	intron (NM_001112726, intron 13 of 18)	26786	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
31979	chr10	100747771	100748480	+	0	NA	TTS (NM_001374303)	TTS (NM_001374303)	2543	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
35971	chr11	2851771	2852250	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	9559	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
160071	chr3	18725521	18726400	+	0	NA	Intergenic	Intergenic	-280368	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
30733	chr10	84138701	84140600	+	0	NA	intron (NM_014394, intron 1 of 8)	CpG	141	NM_014394	27069		NM_014394	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
234970	chrX	39327201	39327500	+	0	NA	promoter-TSS (NR_038968)	promoter-TSS (NR_038968)	12	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
205614	chr7	22269071	22269230	+	0	NA	intron (NM_012294, intron 6 of 25)	intron (NM_012294, intron 6 of 25)	-74340	NM_001367602	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
91209	chr17	3919801	3920000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3435	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
95201	chr17	35236901	35237100	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-6072	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
67374	chr14	69766021	69767400	+	0	NA	promoter-TSS (NM_006925)	promoter-TSS (NM_006925)	-432	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
236031	chrX	55342971	55343500	+	0	NA	Intergenic	L1PA17|LINE|L1	63147	NR_130179	100421746		NR_130179	ENSG00000290748	LOC100421746	-	PAGE family member 5 pseudogene	pseudo
179159	chr4	169760271	169760630	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-2506	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
35302	chr11	1023621	1023880	+	0	NA	intron (NM_005961, intron 25 of 32)	intron (NM_005961, intron 25 of 32)	12968	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
137393	chr2	196226251	196226950	+	0	NA	intron (NM_001348768, intron 22 of 28)	intron (NM_001348768, intron 22 of 28)	-33424	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
119780	chr19	41311751	41312750	+	0	NA	intron (NM_001346100, intron 1 of 4)	AluSx1|SINE|Alu	1773	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
7002	chr1	31880021	31880880	+	0	NA	Intergenic	Intergenic	57368	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
178325	chr4	145635251	145635550	+	0	NA	intron (NM_001375644, intron 1 of 6)	L1M1|LINE|L1	16015	NM_172250	166785		NM_172250	ENSG00000151611	MMAA	cblA	metabolism of cobalamin associated A	protein-coding
137142	chr2	191054001	191054200	+	0	NA	intron (NM_003151, intron 14 of 23)	AluJb|SINE|Alu	32574	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
116583	chr19	18250121	18251180	+	0	NA	intron (NR_036575, intron 2 of 3)	AluJr|SINE|Alu	-2450	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
230691	chr9	128730771	128730930	+	0	NA	3' UTR (NM_001375959, exon 15 of 15)	3' UTR (NM_001375959, exon 15 of 15)	6388	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
175162	chr4	55708021	55708280	+	0	NA	Intergenic	L1PA4|LINE|L1	-71357	NR_120489	10874		NM_006681	ENSG00000109255	NMU	-	neuromedin U	protein-coding
38951	chr11	47522321	47522730	+	0	NA	intron (NM_001376409, intron 1 of 15)	AluSx1|SINE|Alu	1306	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
188298	chr5	151153871	151154230	+	0	NA	intron (NM_001363114, intron 1 of 24)	intron (NM_001363114, intron 1 of 24)	3729	NM_001155	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
96827	chr17	41961321	41961700	+	0	NA	intron (NM_031421, intron 11 of 11)	intron (NM_031421, intron 11 of 11)	-5285	NM_033133	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
55608	chr12	106914621	106915380	+	0	NA	Intergenic	LTR107_Mam|LTR|LTR	-40722	NM_001319666	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
64957	chr14	35977651	35977750	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-92727	NR_073454	101101773		NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
68562	chr14	89399501	89400200	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	17383	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
136752	chr2	181308621	181309150	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	-3233	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
102949	chr17	76682971	76683900	+	0	NA	intron (NR_130928, intron 3 of 3)	intron (NR_130928, intron 3 of 3)	5228	NM_001363769	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
147517	chr20	59202421	59202680	+	0	NA	intron (NM_178457, intron 3 of 5)	intron (NM_178457, intron 3 of 5)	38729	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
232947	chr9	136941851	136942550	+	0	NA	exon (NM_018998, exon 6 of 9)	exon (NM_018998, exon 6 of 9)	2538	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
207097	chr7	40014121	40014380	+	0	NA	intron (NM_003718, intron 5 of 13)	AluSx4|SINE|Alu	63890	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
21517	chr1	205782471	205783000	+	0	NA	Intergenic	L1MC4|LINE|L1	-7253	NM_003929	8934		NM_003929	ENSG00000117280	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
137099	chr2	190950271	190950630	+	0	NA	intron (NM_014905, intron 14 of 17)	L2a|LINE|L2	63721	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
39370	chr11	59668371	59670230	+	0	NA	promoter-TSS (NM_152716)	promoter-TSS (NM_152716)	-263	NM_152716	219988		NM_152716	ENSG00000166889	PATL1	Pat1b|hPat1b	PAT1 homolog 1, processing body mRNA decay factor	protein-coding
113574	chr19	10262801	10263200	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-8120	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
105630	chr18	811771	813610	+	0	NA	promoter-TSS (NM_005433)	promoter-TSS (NM_005433)	-448	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
177279	chr4	109548371	109548880	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-11621	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
5232	chr1	24999421	24999780	+	0	NA	Intergenic	MIRb|SINE|MIR	-23903	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
165854	chr3	105865401	105866030	+	0	NA	intron (NM_001321811, intron 2 of 16)	intron (NM_001321811, intron 2 of 16)	1876	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
154104	chr22	31084221	31085830	+	0	NA	promoter-TSS (NM_001207018)	promoter-TSS (NM_001207018)	29	NM_001207018	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
205136	chr7	7151471	7151830	+	0	NA	Intergenic	Intergenic	-30894	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
83126	chr16	22568371	22568530	+	0	NA	intron (NR_003676, intron 5 of 8).2	intron (NR_003676, intron 5 of 8).2	22752	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
229757	chr9	125184751	125185050	+	0	NA	intron (NM_001123369, intron 1 of 5)	AluSx|SINE|Alu	4903	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
147760	chr20	62475901	62476100	+	0	NA	promoter-TSS (NM_080473)	promoter-TSS (NM_080473)	-5	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
107294	chr18	44730951	44731050	+	0	NA	intron (NM_001130110, intron 2 of 3)	MLT1H1|LTR|ERVL-MaLR	30125	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
16878	chr1	155836071	155837030	+	0	NA	intron (NM_001282861, intron 2 of 20)	intron (NM_001282861, intron 2 of 20)	20664	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
157490	chr22	45317571	45319430	+	0	NA	promoter-TSS (NM_001349913)	promoter-TSS (NM_001349913)	57	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
15965	chr1	151881651	151881750	+	0	NA	intron (NM_053055, intron 4 of 5)	L1MEd|LINE|L1	27811	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
7492	chr1	33255451	33257020	+	0	NA	promoter-TSS (NM_152493)	promoter-TSS (NM_152493)	-257	NM_152493	149076		NM_152493	ENSG00000160094	ZNF362	RN|lin-29	zinc finger protein 362	protein-coding
117410	chr19	19625551	19625650	+	0	NA	intron (NM_004720, intron 2 of 2)	AluSc|SINE|Alu	2620	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
161625	chr3	43285851	43287350	+	0	NA	promoter-TSS (NM_001330750)	promoter-TSS (NM_001330750)	60	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
168428	chr3	142506601	142506800	+	0	NA	intron (NM_001184, intron 28 of 46)	AluJb|SINE|Alu	-58638	NM_001282859	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
70253	chr14	101628101	101629130	+	0	NA	Intergenic	CpG	67264	NM_001362	1735		NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	iodothyronine deiodinase 3	protein-coding
2721	chr1	10656821	10657080	+	0	NA	intron (NM_017766, intron 7 of 15)	intron (NM_017766, intron 7 of 15)	139696	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
202042	chr6	153129871	153130300	+	0	NA	intron (NM_012419, intron 1 of 4)	CpG	1197	NM_012419	26575		NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G protein signaling 17	protein-coding
57350	chr12	121773071	121773830	+	0	NA	exon (NM_001080825, exon 9 of 12)	exon (NM_001080825, exon 9 of 12)	20238	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
60057	chr13	33017321	33017830	+	0	NA	intron (NM_004795, intron 1 of 4)	intron (NM_004795, intron 1 of 4)	1152	NM_004795	9365		NM_004795	ENSG00000133116	KL	HFTC3|KLA	klotho	protein-coding
228041	chr9	96009601	96010880	+	0	NA	intron (NM_001375291, intron 18 of 18)	intron (NM_001375291, intron 18 of 18)	11571	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
216815	chr8	22570201	22570400	+	0	NA	intron (NM_005775, intron 17 of 20)	intron (NM_005775, intron 17 of 20)	4571	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
34297	chr10	131975951	131976050	+	0	NA	intron (NM_004052, intron 1 of 5)	intron (NM_004052, intron 1 of 5)	6013	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
99575	chr17	50479501	50480630	+	0	NA	exon (NM_018346, exon 3 of 9)	exon (NM_018346, exon 3 of 9)	1205	NM_018346	55316		NM_018346	ENSG00000136444	RSAD1	HemW	radical S-adenosyl methionine domain containing 1	protein-coding
68291	chr14	77140801	77141980	+	0	NA	promoter-TSS (NM_001364172)	promoter-TSS (NM_001364172)	401	NM_174976	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
19856	chr1	183131271	183131430	+	0	NA	exon (NM_002293, exon 20 of 28)	exon (NM_002293, exon 20 of 28)	9920	NR_149048	110841583		NR_149048	ENSG00000224468	LAMC1-AS1	lnc-LAMC2-1:1	LAMC1 antisense RNA 1	ncRNA
206203	chr7	28239551	28240050	+	0	NA	intron (NR_034097, intron 3 of 3)	intron (NR_034097, intron 3 of 3)	-59005	NM_175061	221895		NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
184765	chr5	110043071	110043300	+	0	NA	Intergenic	L1PA11|LINE|L1	160003	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
159808	chr3	16341121	16341530	+	0	NA	intron (NM_015150, intron 7 of 9)	L1MC1|LINE|L1	76113	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
92117	chr17	7589001	7590000	+	0	NA	exon (NM_006942, exon 1 of 2)	exon (NM_006942, exon 1 of 2)	594	NM_006942	6665		NM_006942	ENSG00000129194	SOX15	SOX20|SOX26|SOX27	SRY-box transcription factor 15	protein-coding
15990	chr1	151978651	151979550	+	0	NA	Intergenic	Intergenic	14759	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
78616	chr15	94119701	94120200	+	0	NA	Intergenic	Intergenic	-12012	NR_120320	101927112		NR_120320	ENSG00000259724	LINC01581	-	long intergenic non-protein coding RNA 1581	ncRNA
16171	chr1	153780301	153781080	+	0	NA	TTS (NM_024330).2	TTS (NM_024330).2	5283	NM_001317929	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
54620	chr12	92593471	92594850	+	0	NA	Intergenic	L2c|LINE|L2	-108683	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
132197	chr2	101995551	101995850	+	0	NA	intron (NM_001261419, intron 1 of 6)	MLT1I|LTR|ERVL-MaLR	-3261	NR_048564	7850		NM_004633	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor type 2	protein-coding
202199	chr6	156460121	156460200	+	0	NA	Intergenic	Intergenic	81410	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
43952	chr11	93661171	93662270	+	0	NA	promoter-TSS (NM_033395)	promoter-TSS (NM_033395)	38	NM_033395	85459		NM_033395	ENSG00000166004	CEP295	KIAA1731|SCKL11	centrosomal protein 295	protein-coding
237992	chrX	134549351	134550230	+	0	NA	promoter-TSS (NR_038998)	promoter-TSS (NR_038998)	-234	NR_038998	100506757		NR_038998	ENSG00000227060	LINC00629	LINC00629A|LINC00629B|LINC00629C|LINC00629D	long intergenic non-protein coding RNA 629	ncRNA
153055	chr22	23281251	23282480	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	19098	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
147491	chr20	59159121	59161080	+	0	NA	5' UTR (NM_001384354, exon 3 of 8)	5' UTR (NM_001384354, exon 3 of 8)	-3721	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
1135	chr1	2147651	2147750	+	0	NA	intron (NM_001350805, intron 4 of 14)	(TCCA)n|Simple_repeat|Simple_repeat	36175	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
64435	chr14	24199001	24199900	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-3714	NM_001289006	10548		NM_006405	ENSG00000100926	TM9SF1	HMP70|MP70	transmembrane 9 superfamily member 1	protein-coding
157761	chr22	46693721	46693980	+	0	NA	intron (NM_022766, intron 9 of 12)	intron (NM_022766, intron 9 of 12)	44402	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
164046	chr3	53350801	53351000	+	0	NA	Intergenic	LTR75_1|LTR|ERV1	-3357	NM_001290204	55802		NM_018403	ENSG00000272886	DCP1A	HSA275986|Nbla00360|SMAD4IP1|SMIF	decapping mRNA 1A	protein-coding
222641	chr8	141130971	141131350	+	0	NA	intron (NM_014957, intron 1 of 22)	intron (NM_014957, intron 1 of 22)	2571	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
208642	chr7	73003371	73003630	+	0	NA	intron (NR_040582, intron 2 of 8)	AluYc|SINE|Alu	2443	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
72356	chr15	31343951	31344430	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	17355	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
73836	chr15	49258701	49258900	+	0	NA	intron (NR_147895, intron 5 of 10)	(TG)n|Simple_repeat|Simple_repeat	88553	NM_002044	2585		NM_002044	ENSG00000156958	GALK2	GK2	galactokinase 2	protein-coding
29476	chr10	70564901	70565480	+	0	NA	intron (NM_014431, intron 19 of 19)	MIR|SINE|MIR	37551	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
43537	chr11	82874001	82874480	+	0	NA	intron (NM_005040, intron 1 of 8)	L2c|LINE|L2	26190	NM_005040	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
170724	chr3	188150101	188151730	+	0	NA	TTS (NR_036497)	TTS (NR_036497)	-2106	NM_001375455	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
203579	chr7	914551	914850	+	0	NA	intron (NM_006869, intron 4 of 10)	intron (NM_006869, intron 4 of 10)	6189	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
12183	chr1	100368601	100369730	+	0	NA	intron (NM_001319210, intron 2 of 16)	AluSc|SINE|Alu	16659	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
133577	chr2	121596401	121596800	+	0	NA	intron (NM_001142274, intron 2 of 37)	intron (NM_001142274, intron 2 of 37)	52862	NM_001378005	23332		NM_015282	ENSG00000074054	CLASP1	MAST1	cytoplasmic linker associated protein 1	protein-coding
128377	chr2	55025351	55025650	+	0	NA	exon (NM_001321862, exon 3 of 9)	exon (NM_001321862, exon 3 of 9)	-15228	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
166986	chr3	125780251	125780430	+	0	NA	intron (NR_153417, intron 1 of 1)	L2b|LINE|L2	5626	NR_153417	105374312		NR_153417	ENSG00000272840	LOC105374312	-	uncharacterized LOC105374312	ncRNA
141160	chr2	239259371	239260150	+	0	NA	intron (NM_006037, intron 2 of 26)	L1MEg|LINE|L1	-45702	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
68465	chr14	86079951	86080050	+	0	NA	intron (NR_110155, intron 2 of 3)	L1PA3|LINE|L1	145322	NR_110155	101928767		NR_110155	ENSG00000258733	LINC02328	-	long intergenic non-protein coding RNA 2328	ncRNA
121938	chr19	48458871	48459430	+	0	NA	intron (NM_013348, intron 1 of 2)	AluY|SINE|Alu	3576	NM_013348	3770		NM_013348	ENSG00000182324	KCNJ14	IRK4|KIR2.4	potassium inwardly rectifying channel subfamily J member 14	protein-coding
206517	chr7	34205651	34205780	+	0	NA	Intergenic	L1PA3|LINE|L1	300176	NM_001365308	168667		NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
220997	chr8	115649501	115650000	+	0	NA	intron (NM_001282903, intron 1 of 6)	intron (NM_001282903, intron 1 of 6)	18263	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
27594	chr10	32445651	32447250	+	0	NA	promoter-TSS (NR_120660)	promoter-TSS (NR_120660)	310	NR_109827	79741		NM_024688	ENSG00000216937	CCDC7	BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68	coiled-coil domain containing 7	protein-coding
23796	chr1	234231451	234231780	+	0	NA	exon (NM_001300845, exon 2 of 7)	exon (NM_001300845, exon 2 of 7)	17404	NM_001300845	148641		NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
26458	chr10	17508271	17508430	+	0	NA	Intergenic	Intergenic	-53755	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
35556	chr11	1650921	1651380	+	0	NA	Intergenic	Intergenic	-14447	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
136519	chr2	177248501	177249400	+	0	NA	intron (NM_001313902, intron 1 of 3)	AluJb|SINE|Alu	7060	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
237868	chrX	130268151	130269600	+	0	NA	promoter-TSS (NM_017666)	promoter-TSS (NM_017666)	24	NM_017666	55609		NM_017666	ENSG00000056277	ZNF280C	SUHW3|ZNF633|ZPET	zinc finger protein 280C	protein-coding
93981	chr17	21975851	21977250	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-226445	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
212944	chr7	130939601	130940000	+	0	NA	Intergenic	Intergenic	26336	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
146097	chr20	47663371	47664150	+	0	NA	intron (NM_198596, intron 15 of 20)	intron (NM_198596, intron 15 of 20)	122304	NM_018837	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
114388	chr19	12563821	12564480	+	0	NA	Intergenic	Intergenic	-12668	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
185481	chr5	131295071	131295430	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluSz6|SINE|Alu	31197	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
151161	chr21	44932201	44933480	+	0	NA	TTS (NR_027128)	TTS (NR_027128)	-4025	NM_001127491	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
164824	chr3	70989151	70989600	+	0	NA	intron (NR_146143, intron 12 of 19)	intron (NR_146143, intron 12 of 19)	75549	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
198592	chr6	107700701	107700900	+	0	NA	Intergenic	Intergenic	31350	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
51758	chr12	53293151	53293250	+	0	NA	intron (NM_012291, intron 30 of 30)	intron (NM_012291, intron 30 of 30)	-2251	NM_145897	5204		NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
50056	chr12	44654821	44655280	+	0	NA	intron (NM_001145108, intron 13 of 19)	intron (NM_001145108, intron 13 of 19)	220611	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
92777	chr17	15701351	15701880	+	0	NA	intron (NM_001369437, intron 3 of 3)	intron (NM_001369437, intron 3 of 3)	1863	NM_001369436	57335		NM_020652	ENSG00000187607	ZNF286A	ZNF286	zinc finger protein 286A	protein-coding
68490	chr14	88023501	88024500	+	0	NA	promoter-TSS (NR_046094)	promoter-TSS (NR_046094)	-550	NR_046094	283587		NR_046094	ENSG00000258867	HISLA	LINC01146	HIF1A stabilizing long noncoding RNA	ncRNA
16711	chr1	155233751	155234300	+	0	NA	TTS (NM_001005742).2	TTS (NM_001005742).2	-6491	NR_002188	2630		NR_002188	ENSG00000291137	GBA1LP	Beta-GC|GBA|GBAP|GBAP1|GC|GLUC	glucosylceramidase beta 1 like, pseudogene	pseudo
157083	chr22	42617051	42617150	+	0	NA	TTS (NM_007326)	TTS (NM_007326)	1855	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
209563	chr7	77350001	77350600	+	0	NA	intron (NR_146937, intron 18 of 31)	L1PA3|LINE|L1	-64898	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
110925	chr19	2782801	2783800	+	0	NA	promoter-TSS (NM_003021)	promoter-TSS (NM_003021)	-27	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
206760	chr7	36695651	36695750	+	0	NA	intron (NM_001177506, intron 1 of 21)	intron (NM_001177506, intron 1 of 21)	28794	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
45022	chr11	117020971	117021130	+	0	NA	intron (NM_001281748, intron 1 of 24)	MER21B|LTR|ERVL	77378	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
171526	chr3	196684671	196685300	+	0	NA	Intergenic	Intergenic	27265	NM_001379468	84984		NM_032898	ENSG00000174007	CEP19	C3orf34|MOSPGF	centrosomal protein 19	protein-coding
99472	chr17	50164471	50164850	+	0	NA	Intergenic	Intergenic	-1345	NM_000023	6442		NM_000023	ENSG00000108823	SGCA	50DAG|ADL|DAG2|DMDA2|LGMD2D|LGMDR3|SCARMD1|adhalin	sarcoglycan alpha	protein-coding
131742	chr2	98450401	98450800	+	0	NA	intron (NM_001351429, intron 1 of 23)	MIR|SINE|MIR	4590	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
170623	chr3	187021601	187021800	+	0	NA	promoter-TSS (NM_003032)	promoter-TSS (NM_003032)	-155	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
93792	chr17	20451951	20452050	+	0	NA	intron (NM_001042685, intron 8 of 10)	intron (NM_001042685, intron 8 of 10)	15176	NR_144552	339256		NR_144552	ENSG00000291195	NOS2P3	-	nitric oxide synthase 2 pseudogene 3	pseudo
152114	chr22	19907401	19907600	+	0	NA	intron (NR_147957, intron 7 of 16)	CpG	25053	NM_001352301	10587		NM_006440	ENSG00000184470	TXNRD2	GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2|TXNR2	thioredoxin reductase 2	protein-coding
112194	chr19	5674901	5675500	+	0	NA	Intergenic	Intergenic	5038	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
181863	chr5	53560301	53561000	+	0	NA	promoter-TSS (NM_002495)	promoter-TSS (NM_002495)	11	NR_134473	4724		NM_002495	ENSG00000164258	NDUFS4	AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1	NADH:ubiquinone oxidoreductase subunit S4	protein-coding
147203	chr20	57372871	57373030	+	0	NA	intron (NM_003610, intron 8 of 11)	intron (NM_003610, intron 8 of 11)	-13452	NM_001190472	100462983		NM_001190472		MTRNR2L3	HN3	MT-RNR2 like 3 (pseudogene)	pseudo
64532	chr14	24435521	24435980	+	0	NA	intron (NM_015299, intron 5 of 7)	intron (NM_015299, intron 5 of 7)	5796	NM_015299	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
55494	chr12	104747771	104748600	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	156552	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
235	chr1	897151	897650	+	0	NA	Intergenic	HERVK9-int|LTR|ERVK	-20598	NR_027055	284593		NR_027055	ENSG00000230368	FAM41C	-	family with sequence similarity 41 member C	ncRNA
190240	chr5	178518301	178518700	+	0	NA	intron (NM_173465, intron 2 of 28)	SVA_F|Retroposon|SVA	71893	NM_173465	91522		NM_173465	ENSG00000050767	COL23A1	-	collagen type XXIII alpha 1 chain	protein-coding
153423	chr22	25034021	25034280	+	0	NA	intron (NM_001145206, intron 2 of 10)	AluSq|SINE|Alu	6176	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
120147	chr19	42225421	42225750	+	0	NA	exon (NM_001314033, exon 3 of 3)	exon (NM_001314033, exon 3 of 3)	5273	NM_001314033	116115		NM_133444	ENSG00000167625	ZNF526	DENNED	zinc finger protein 526	protein-coding
17519	chr1	156766451	156768300	+	0	NA	promoter-TSS (NM_005973)	promoter-TSS (NM_005973)	-160	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
54956	chr12	96249321	96249880	+	0	NA	intron (NM_005230, intron 3 of 4)	intron (NM_005230, intron 3 of 4)	-5898	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
169128	chr3	155869901	155871900	+	0	NA	intron (NM_003875, intron 1 of 15)	CpG	250	NM_003875	8833		NM_003875	ENSG00000163655	GMPS	GATD7	guanine monophosphate synthase	protein-coding
12728	chr1	109543151	109543650	+	0	NA	exon (NM_031936, exon 2 of 3)	exon (NM_031936, exon 2 of 3)	3528	NM_031936	83873		NM_031936	ENSG00000156097	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
206491	chr7	33062151	33063370	+	0	NA	promoter-TSS (NM_001002010)	promoter-TSS (NM_001002010)	16	NM_001002010	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
217299	chr8	27378501	27379300	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	53336	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
36664	chr11	8090801	8091000	+	0	NA	intron (NM_003320, intron 4 of 12)	intron (NM_003320, intron 4 of 12)	9689	NM_177972	7275		NM_003320	ENSG00000166402	TUB	RDOB|rd5	TUB bipartite transcription factor	protein-coding
152636	chr22	21508371	21508530	+	0	NA	intron (NR_003700, intron 1 of 16)	AluJb|SINE|Alu	9041	NR_003700	375133		NR_003700	ENSG00000293427	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
112929	chr19	7679021	7679720	+	0	NA	3' UTR (NM_174918, exon 7 of 7)	3' UTR (NM_174918, exon 7 of 7)	-1463	NM_174894	126003		NM_174894	ENSG00000181029	TRAPPC5	TRS31	trafficking protein particle complex subunit 5	protein-coding
4683	chr1	22712201	22712780	+	0	NA	intron (NM_017449, intron 1 of 15)	intron (NM_017449, intron 1 of 15)	1651	NM_001309193	2048		NM_004442	ENSG00000133216	EPHB2	BDPLT22|CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5	EPH receptor B2	protein-coding
123406	chr19	53981371	53981880	+	0	NA	promoter-TSS (NR_030632)	promoter-TSS (NR_030632)	-682	NR_030632	100126325		NR_030632	ENSG00000284583	MIR935	MIRN935|hsa-mir-935|mir-935	microRNA 935	ncRNA
132008	chr2	100610251	100610730	+	0	NA	Intergenic	Intergenic	6751	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
225750	chr9	37120031	37121650	+	0	NA	5' UTR (NM_001289121, exon 1 of 9)	5' UTR (NM_001289121, exon 1 of 9)	242	NM_001289120	84186		NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
6724	chr1	30189171	30189530	+	0	NA	Intergenic	L2b|LINE|L2	-151738	NR_110790	101929406		NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
95168	chr17	35159471	35159630	+	0	NA	intron (NM_173167, intron 7 of 18)	intron (NM_173167, intron 7 of 18)	11286	NM_173167	146862		NM_173167	ENSG00000141161	UNC45B	CMYA4|CTRCT43|MFM11|SMUNC45|UNC-45B|UNC45	unc-45 myosin chaperone B	protein-coding
1210	chr1	2261651	2261750	+	0	NA	intron (NM_003036, intron 1 of 6)	L1MC4|LINE|L1	33381	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
58949	chr13	19778971	19779130	+	0	NA	intron (NM_001354909, intron 1 of 8)	SVA_F|Retroposon|SVA	3895	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
95400	chr17	35969501	35970000	+	0	NA	Intergenic	Intergenic	11747	NM_004590	6360		NM_004590	ENSG00000275152	CCL16	CKb12|HCC-4|ILINCK|LCC-1|LEC|LMC|Mtn-1|NCC-4|NCC4|SCYA16|SCYL4	C-C motif chemokine ligand 16	protein-coding
109637	chr19	996101	997130	+	0	NA	Intergenic	CpG	-3804	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
221277	chr8	122805721	122805980	+	0	NA	intron (NM_014943, intron 1 of 3)	L2c|LINE|L2	24195	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
237437	chrX	119677401	119678000	+	0	NA	intron (NM_145799, intron 1 of 10)	intron (NM_145799, intron 1 of 10)	15468	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
116231	chr19	17530371	17530930	+	0	NA	intron (NM_001321828, intron 1 of 13)	intron (NM_001321828, intron 1 of 13)	3381	NM_001321828	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
107439	chr18	46224151	46224930	+	0	NA	intron (NM_001008239, intron 2 of 3)	MER5B|DNA|hAT-Charlie	50506	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
191676	chr6	13465521	13465780	+	0	NA	intron (NM_018988, intron 1 of 1)	MER5B|DNA|hAT-Charlie	6413	NR_038459	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
115787	chr19	16365671	16366800	+	0	NA	intron (NR_047665, intron 21 of 22)	intron (NR_047665, intron 21 of 22)	41409	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
229328	chr9	120898271	120898430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3454	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
190573	chr5	180860071	180862030	+	0	NA	intron (NM_001377940, intron 1 of 2)	CpG	226	NM_001377943	643836		NM_152283	ENSG00000196670	ZFP62	ZET|ZNF755	ZFP62 zinc finger protein	protein-coding
14477	chr1	144519701	144520830	+	0	NA	Intergenic	MIRb|SINE|MIR	31678	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
214218	chr7	148747271	148747530	+	0	NA	intron (NM_001370660, intron 2 of 21)	L1MEd|LINE|L1	47690	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
95861	chr17	38844601	38845300	+	0	NA	Intergenic	AluSx|SINE|Alu	-3512	NM_001080465	388381		NM_001080465	ENSG00000275489	SPMAP1	C17orf98	sperm microtubule associated protein 1	protein-coding
91869	chr17	7236921	7238800	+	0	NA	intron (NM_024297, intron 1 of 4)	CpG	1070	NM_001284518	79142		NM_024297	ENSG00000040633	PHF23	hJUNE-1b	PHD finger protein 23	protein-coding
121074	chr19	45881351	45881650	+	0	NA	Intergenic	L2b|LINE|L2	4641	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
207108	chr7	41704821	41705500	+	0	NA	intron (NR_027118, intron 1 of 3)	intron (NR_027118, intron 1 of 3)	-2070	NM_002192	3624		NM_002192	ENSG00000122641	INHBA	EDF|FRP	inhibin subunit beta A	protein-coding
178459	chr4	148112301	148112500	+	0	NA	intron (NR_148974, intron 6 of 6)	intron (NR_148974, intron 6 of 6)	329805	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
53639	chr12	68203351	68204080	+	0	NA	intron (NM_018402, intron 3 of 4)	intron (NM_018402, intron 3 of 4)	22095	NM_018402	55801		NM_018402	ENSG00000111536	IL26	AK155|IL-26	interleukin 26	protein-coding
4716	chr1	23209921	23210380	+	0	NA	intron (NM_000864, intron 1 of 1)	AluSz|SINE|Alu	7352	NM_000864	3352		NM_000864	ENSG00000179546	HTR1D	5-HT1D|HT1DA|HTR1DA|HTRL|RDC4	5-hydroxytryptamine receptor 1D	protein-coding
31095	chr10	89253771	89254380	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-2036	NM_001288979	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
115619	chr19	16082421	16082680	+	0	NA	intron (NM_001367837, intron 2 of 7)	intron (NM_001367837, intron 2 of 7)	5534	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
56893	chr12	120319351	120320030	+	0	NA	Intergenic	AluSx|SINE|Alu	8089	NM_000928	5319		NM_000928	ENSG00000170890	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2 group IB	protein-coding
74581	chr15	60554771	60556050	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	37116	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
155699	chr22	39086871	39087330	+	0	NA	exon (NM_021822, exon 7 of 8)	exon (NM_021822, exon 7 of 8)	9825	NM_001349438	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
128520	chr2	60674601	60675100	+	0	NA	Intergenic	Intergenic	-81418	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
133320	chr2	113892201	113892700	+	0	NA	intron (NM_001277140, intron 1 of 11)	MamTip2|DNA|hAT-Tip100	-1458	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
72198	chr15	30135621	30135880	+	0	NA	intron (NM_001355469, intron 1 of 18).8	intron (NM_001355469, intron 1 of 18).8	699	NM_001355469	653075		NM_001355469	ENSG00000261247	GOLGA8T	-	golgin A8 family member T	protein-coding
212022	chr7	114925271	114925930	+	0	NA	intron (NM_199072, intron 2 of 4)	MER102b|DNA|hAT-Charlie	3446	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
237896	chrX	131741751	131742050	+	0	NA	intron (NR_152876, intron 8 of 9)	intron (NR_152876, intron 8 of 9)	88743	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
56922	chr12	120440971	120441280	+	0	NA	TTS (NM_004373)	TTS (NM_004373)	3012	NM_004373	1337		NM_004373	ENSG00000111775	COX6A1	CMTRID|COX6A|COX6AL	cytochrome c oxidase subunit 6A1	protein-coding
140637	chr2	233470801	233471000	+	0	NA	3' UTR (NM_152879, exon 30 of 30)	3' UTR (NM_152879, exon 30 of 30)	18998	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
216307	chr8	12664201	12664400	+	0	NA	intron (NR_047662, intron 1 of 8)	AluJb|SINE|Alu	1311	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
127045	chr2	37204101	37204300	+	0	NA	3' UTR (NM_001322373, exon 6 of 6)	3' UTR (NM_001322373, exon 6 of 6)	7704	NR_136316	100505876		NM_001322373	ENSG00000218739	CEBPZOS	CEBPZ-AS1	CEBPZ opposite strand	protein-coding
157389	chr22	44732601	44734130	+	0	NA	intron (NM_001017530, intron 6 of 7)	intron (NM_001017530, intron 6 of 7)	-19193	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
71433	chr14	105644401	105645530	+	0	NA	Intergenic	Intergenic	4797	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
22731	chr1	224261521	224261780	+	0	NA	intron (NM_206840, intron 17 of 21)	intron (NM_206840, intron 17 of 21)	-4540	NR_031574	100313769		NR_031574		MIR320B2	MIR320B-2|MIRN320B2|mir-320b-2	microRNA 320b-2	ncRNA
31060	chr10	88988371	88989130	+	0	NA	intron (NM_001320855, intron 1 of 8)	MER103C|DNA|hAT-Charlie	-2048	NR_028035	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
38576	chr11	46115671	46117000	+	0	NA	intron (NR_147890, intron 1 of 18)	intron (NR_147890, intron 1 of 18)	4484	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
72405	chr15	31398471	31399100	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	71950	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
94428	chr17	29139201	29139600	+	0	NA	intron (NM_001346768, intron 1 of 40)	intron (NM_001346768, intron 1 of 40)	989	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
72891	chr15	40326001	40326200	+	0	NA	3' UTR (NM_001301268, exon 1 of 1)	3' UTR (NM_001301268, exon 1 of 1)	2408	NM_001301268	100505573		NM_001301268	ENSG00000259330	INAFM2	LINC00984|OGU1	InaF motif containing 2	protein-coding
61547	chr13	60425321	60425650	+	0	NA	intron (NM_001146070, intron 1 of 13)	L1MA9|LINE|L1	28265	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
96745	chr17	41691801	41694800	+	0	NA	TTS (NM_005801)	TTS (NM_005801)	4415	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
235104	chrX	40539201	40539900	+	0	NA	Intergenic	Intergenic	-41420	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
141313	chr2	240452371	240453880	+	0	NA	intron (NR_161169, intron 1 of 2)	CpG	-2876	NR_029702	406941		NR_029702	ENSG00000207611	MIR149	MIRN149|mir-149	microRNA 149	ncRNA
45392	chr11	118329851	118330330	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	12615	NM_000732	915		NM_000732	ENSG00000167286	CD3D	CD3-DELTA|CD3DELTA|IMD19|T3D	CD3 delta subunit of T-cell receptor complex	protein-coding
101188	chr17	65262151	65262550	+	0	NA	Intergenic	MamGypLTR1d|LTR|Gypsy	124980	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
182083	chr5	55990721	55991080	+	0	NA	intron (NR_157112, intron 1 of 17)	L1PA5|LINE|L1	4063	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
689	chr1	1389321	1390050	+	0	NA	intron (NR_135154, intron 8 of 12)	AluY|SINE|Alu	8657	NM_001350497	81669		NM_030937	ENSG00000221978	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
226854	chr9	78020551	78021050	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	11011	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
216801	chr8	22553721	22554380	+	0	NA	intron (NM_005775, intron 1 of 20)	intron (NM_005775, intron 1 of 20)	2123	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
113225	chr19	8475871	8476250	+	0	NA	intron (NM_031203, intron 13 of 16)	intron (NM_031203, intron 13 of 16)	26580	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
69683	chr14	98151301	98151500	+	0	NA	Intergenic	Charlie17|DNA|hAT-Charlie	-173276	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
12830	chr1	110036121	110037050	+	0	NA	intron (NR_073071, intron 1 of 21)	intron (NR_073071, intron 1 of 21)	1961	NM_033088	85369		NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
13350	chr1	113849771	113850850	+	0	NA	intron (NM_001308297, intron 9 of 19)	intron (NM_001308297, intron 9 of 19)	-6325	NR_037864	100287722		NR_037864	ENSG00000226167	AP4B1-AS1	-	AP4B1 antisense RNA 1	ncRNA
94646	chr17	30122601	30123430	+	0	NA	intron (NM_032141, intron 2 of 6)	AluJr|SINE|Alu	-5855	NR_036149	100423003		NR_036149	ENSG00000284399	MIR3184	-	microRNA 3184	ncRNA
46468	chr11	128294121	128294780	+	0	NA	Intergenic	Intergenic	85684	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
180385	chr5	7897071	7897230	+	0	NA	exon (NM_002454, exon 14 of 15)	exon (NM_002454, exon 14 of 15)	28002	NR_157174	4552		NM_002454	ENSG00000124275	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
91671	chr17	5537271	5537630	+	0	NA	intron (NM_014922, intron 7 of 15)	intron (NM_014922, intron 7 of 15)	-36444	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
87044	chr16	68287451	68288250	+	0	NA	exon (NM_003983, exon 4 of 11)	exon (NM_003983, exon 4 of 11)	23096	NM_032178	84138		NM_032178	ENSG00000103061	SLC7A6OS	EPM12|Iwr1	solute carrier family 7 member 6 opposite strand	protein-coding
95679	chr17	38351521	38353230	+	0	NA	exon (NM_014598, exon 1 of 10)	exon (NM_014598, exon 1 of 10)	531	NM_014598	30837		NM_014598	ENSG00000274211	SOCS7	NAP4|NCKAP4	suppressor of cytokine signaling 7	protein-coding
215066	chr7	152894401	152894650	+	0	NA	Intergenic	CpG	134773	NM_020445	57180		NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	actin related protein 3B	protein-coding
221026	chr8	116690901	116691330	+	0	NA	intron (NM_003756, intron 2 of 7)	intron (NM_003756, intron 2 of 7)	39015	NR_136278	105375713		NR_136278	ENSG00000289382	LOC105375713	-	uncharacterized LOC105375713	ncRNA
46100	chr11	122863721	122864080	+	0	NA	intron (NM_019604, intron 6 of 9)	intron (NM_019604, intron 6 of 9)	1569	NM_001304782	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
145308	chr20	41057151	41057330	+	0	NA	intron (NM_003286, intron 2 of 20)	AluSx3|SINE|Alu	28418	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
193940	chr6	31658501	31658700	+	0	NA	TTS (NM_001256169).3	TTS (NM_001256169).3	2178	NM_021184	57827		NM_021184	ENSG00000204439	C6orf47	D6S53E|G4|NG34	chromosome 6 open reading frame 47	protein-coding
85364	chr16	50267341	50268060	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	1149	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
148383	chr20	63898601	63899650	+	0	NA	intron (NM_025219, intron 1 of 4)	MIRb|SINE|MIR	3999	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
108118	chr18	62323301	62323850	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-1712	NM_001270949	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
224645	chr9	20621601	20623100	+	0	NA	promoter-TSS (NM_001286691)	promoter-TSS (NM_001286691)	149	NM_004529	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
66910	chr14	65299621	65300280	+	0	NA	Intergenic	Intergenic	35233	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
123094	chr19	51447651	51447830	+	0	NA	Intergenic	LTR12|LTR|ERV1	10714	NM_014442	27181		NM_014442	ENSG00000105366	SIGLEC8	SAF2|SIGLEC-8|SIGLEC8L	sialic acid binding Ig like lectin 8	protein-coding
87552	chr16	71930551	71930900	+	0	NA	TTS (NM_001270979)	TTS (NM_001270979)	35194	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
5070	chr1	24672721	24673300	+	0	NA	non-coding (NR_159379, exon 18 of 18)	non-coding (NR_159379, exon 18 of 18)	29431	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
233453	chr9	137638421	137638680	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	19545	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
223297	chr8	143786871	143787400	+	0	NA	intron (NM_001381874, intron 7 of 13)	LTR55|LTR|ERVL?	25907	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
193696	chr6	31123551	31123850	+	0	NA	intron (NM_014068, intron 1 of 5).5	intron (NM_014068, intron 1 of 5).5	-3254	NM_001264	1041		NM_001264	ENSG00000204539	CDSN	HTSS|HTSS1|HYPT2|PSS|PSS1	corneodesmosin	protein-coding
24642	chr1	246818421	246818680	+	0	NA	Intergenic	Intergenic	28933	NR_015422	149134		NM_207326		LINC01341	-	long intergenic non-protein coding RNA 1341	ncRNA
187114	chr5	140406851	140407900	+	0	NA	intron (NM_020690, intron 1 of 35)	FLAM_C|SINE|Alu	5542	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
203546	chr7	880821	881480	+	0	NA	intron (NM_015949, intron 1 of 8)	AluSx1|SINE|Alu	4596	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
163322	chr3	50368371	50368530	+	0	NA	TTS (NR_111912)	TTS (NR_111912)	3087	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
18482	chr1	161626121	161627350	+	0	NA	intron (NM_001244753, intron 3 of 4)	intron (NM_001244753, intron 3 of 4)	4312	NM_001271036	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
47431	chr12	3199771	3199930	+	0	NA	intron (NM_006675, intron 2 of 8)	CpG	122471	NM_006675	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
184928	chr5	112958501	112958700	+	0	NA	Intergenic	Intergenic	-18198	NM_001242377	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
33876	chr10	124416951	124417530	+	0	NA	intron (NM_001322970, intron 1 of 11)	intron (NM_001322970, intron 1 of 11)	1683	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
216665	chr8	22138771	22139780	+	0	NA	intron (NM_025232, intron 5 of 7)	intron (NM_025232, intron 5 of 7)	2632	NM_001316964	80346		NM_025232	ENSG00000168476	REEP4	C8orf20|PP432|Yip2c	receptor accessory protein 4	protein-coding
131411	chr2	96280821	96281500	+	0	NA	intron (NM_014014, intron 35 of 44)	AluSx1|SINE|Alu	14935	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
31325	chr10	92845421	92845680	+	0	NA	intron (NM_001013848, intron 2 of 22)	AluSz|SINE|Alu	-2905	NM_001319200	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
85928	chr16	57126201	57126850	+	0	NA	intron (NM_152727, intron 11 of 15)	intron (NM_152727, intron 11 of 15)	33942	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
50821	chr12	49095671	49096350	+	0	NA	Intergenic	AluJr|SINE|Alu	-1209	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
198747	chr6	108565101	108566600	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	4933	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
49780	chr12	31887251	31887350	+	0	NA	promoter-TSS (NR_135029)	promoter-TSS (NR_135029)	-97	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
6960	chr1	31767171	31767530	+	0	NA	Intergenic	Intergenic	-3010	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
78536	chr15	92957901	92958780	+	0	NA	intron (NM_001271, intron 16 of 38)	L1MB1|LINE|L1	53941	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
48837	chr12	12362051	12362880	+	0	NA	intron (NM_058169, intron 2 of 3)	L1PA5|LINE|L1	5387	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
225882	chr9	39603951	39604300	+	0	NA	Intergenic	CpG	-139599	NR_003528	401509		NM_001032297		ZNF658B	-	zinc finger protein 658B (pseudogene)	pseudo
193668	chr6	30963951	30964650	+	0	NA	Intergenic	Intergenic	-9438	NR_138040	102723346		NR_138040		HCG21	NCRNA00150	HLA complex group 21	ncRNA
219100	chr8	65925871	65926230	+	0	NA	Intergenic	MIR|SINE|MIR	-83986	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
158209	chr22	50259221	50259850	+	0	NA	intron (NM_001303252, intron 2 of 10)	intron (NM_001303252, intron 2 of 10)	2148	NM_002969	6300		NM_002969	ENSG00000188130	MAPK12	ERK-6|ERK3|ERK6|MAPK 12|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
119606	chr19	40761001	40761200	+	0	NA	intron (NM_004596, intron 3 of 5)	AluSx|SINE|Alu	9897	NM_004596	6626		NM_004596	ENSG00000077312	SNRPA	Mud1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding
31473	chr10	96548801	96549200	+	0	NA	intron (NM_020123, intron 7 of 14)	intron (NM_020123, intron 7 of 14)	-35074	NM_012465	7093		NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding
99734	chr17	50917471	50917830	+	0	NA	Intergenic	Intergenic	-49672	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
80000	chr16	1911051	1911430	+	0	NA	TTS (NM_001009606)	TTS (NM_001009606)	7175	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
57885	chr12	123431021	123431730	+	0	NA	intron (NM_145058, intron 1 of 3)	L1MB3|LINE|L1	5358	NR_130703	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
416	chr1	1078001	1078510	+	0	NA	Intergenic	Intergenic	-3949	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
50128	chr12	45469701	45470100	+	0	NA	Intergenic	MER52C|LTR|ERV1	177210	NM_001142678	196527		NM_001025356	ENSG00000177119	ANO6	BDPLT7|SCTS|TMEM16F	anoctamin 6	protein-coding
144707	chr20	36491621	36492900	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	30465	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
138481	chr2	207046701	207047080	+	0	NA	Intergenic	LTR33A|LTR|ERVL	63183	NR_036227	100423036		NR_036227	ENSG00000253008	MIR2355	mir-2355	microRNA 2355	ncRNA
44207	chr11	96299251	96299550	+	0	NA	intron (NM_032427, intron 1 of 4)	L2|LINE|L2	-42038	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
187636	chr5	143004771	143004930	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-135940	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
223122	chr8	143472071	143472230	+	0	NA	intron (NM_015117, intron 5 of 11)	intron (NM_015117, intron 5 of 11)	34098	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
235565	chrX	47365851	47366730	+	0	NA	Intergenic	Intergenic	-4288	NM_003446	7712		NM_003446	ENSG00000147117	ZNF157	HZF22	zinc finger protein 157	protein-coding
119956	chr19	41881021	41881500	+	0	NA	3' UTR (NM_001783, exon 5 of 5)	3' UTR (NM_001783, exon 5 of 5)	-1924	NM_198977	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
22120	chr1	211737201	211737400	+	0	NA	Intergenic	Intergenic	61538	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
102872	chr17	76510321	76510730	+	0	NA	Intergenic	AluJo|SINE|Alu	-9098	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
128871	chr2	64039421	64039680	+	0	NA	Intergenic	HAL1|LINE|L1	-20122	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
2715	chr1	10652871	10653330	+	0	NA	intron (NM_017766, intron 11 of 15)	intron (NM_017766, intron 11 of 15)	143546	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
50783	chr12	49040771	49042400	+	0	NA	intron (NM_003482, intron 31 of 54)	intron (NM_003482, intron 31 of 54)	19209	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
70113	chr14	100242321	100242880	+	0	NA	intron (NM_003403, intron 1 of 4)	AluY|SINE|Alu	3456	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
11744	chr1	92016601	92017200	+	0	NA	Intergenic	L2|LINE|L2	-13085	NM_173567	253152		NM_173567	ENSG00000172031	EPHX4	ABHD7|EH4|EPHXRP	epoxide hydrolase 4	protein-coding
21637	chr1	206611851	206612750	+	0	NA	exon (NM_006893, exon 1 of 15)	exon (NM_006893, exon 1 of 15)	165	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
63202	chr13	113814921	113815980	+	0	NA	promoter-TSS (NR_044995)	promoter-TSS (NR_044995)	-160	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
155970	chr22	39897971	39898330	+	0	NA	Intergenic	L2a|LINE|L2	-2934	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
182389	chr5	61277121	61277700	+	0	NA	Intergenic	Intergenic	-12481	NR_146624	105378992		NR_146624	ENSG00000249279	LINC02057	-	long intergenic non-protein coding RNA 2057	ncRNA
191649	chr6	13375371	13376150	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	32377	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
26810	chr10	23447401	23447600	+	0	NA	Intergenic	Intergenic	8425	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
141019	chr2	238166601	238167000	+	0	NA	intron (NM_001291832, intron 7 of 7)	intron (NM_001291832, intron 7 of 7)	7830	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
89567	chr16	89258271	89258730	+	0	NA	Intergenic	L1M4|LINE|L1	-37628	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
215098	chr7	155204751	155206200	+	0	NA	Intergenic	Intergenic	-92297	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
206336	chr7	30319201	30319800	+	0	NA	intron (NM_147128, intron 1 of 4)	MIRb|SINE|MIR	-29610	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
205864	chr7	24976921	24977580	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	2928	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
3064	chr1	12171401	12172850	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	5134	NM_001066	7133		NM_001066	ENSG00000028137	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	TNF receptor superfamily member 1B	protein-coding
235472	chrX	46626651	46627100	+	0	NA	intron (NM_001257291, intron 14 of 16)	MSTA|LTR|ERVL-MaLR	53110	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
176362	chr4	88521521	88521780	+	0	NA	exon (NM_001042616, exon 2 of 2)	exon (NM_001042616, exon 2 of 2)	2126	NM_001042616	84992		NM_001042616	ENSG00000255072	PIGY	HPMRS6|PIG-Y	phosphatidylinositol glycan anchor biosynthesis class Y	protein-coding
201599	chr6	149356351	149356730	+	0	NA	intron (NM_001369506, intron 2 of 7)	MLT1A0|LTR|ERVL-MaLR	38240	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
84900	chr16	31209171	31209330	+	0	NA	Intergenic	Intergenic	-4869	NM_001008274	493829		NM_001008274	ENSG00000177238	TRIM72	MG53	tripartite motif containing 72	protein-coding
131597	chr2	96869701	96870300	+	0	NA	promoter-TSS (NM_017789)	promoter-TSS (NM_017789)	80	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
161740	chr3	44476121	44476600	+	0	NA	intron (NM_181489, intron 1 of 7)	intron (NM_181489, intron 1 of 7)	1310	NM_181489	353274		NM_181489	ENSG00000185219	ZNF445	ZFP445|ZKSCAN15|ZNF168|ZSCAN47	zinc finger protein 445	protein-coding
51278	chr12	51202721	51203180	+	0	NA	3' UTR (NM_001351088, exon 3 of 3)	3' UTR (NM_001351088, exon 3 of 3)	14355	NM_001368008	5463		NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
288	chr1	945071	945730	+	0	NA	TTS (NM_152486)	TTS (NM_152486)	13856	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
230538	chr9	128372421	128372700	+	0	NA	intron (NM_001135947, intron 1 of 3)	intron (NM_001135947, intron 1 of 3)	1186	NR_049743	81605		NM_030914	ENSG00000167118	URM1	C9orf74	ubiquitin related modifier 1	protein-coding
145971	chr20	46332451	46332550	+	0	NA	Intergenic	Intergenic	-24002	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
92257	chr17	7992901	7993150	+	0	NA	Intergenic	MER66B|LTR|ERV1	-9590	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
48014	chr12	6933571	6933730	+	0	NA	intron (NM_001940, intron 1 of 9)	intron (NM_001940, intron 1 of 9)	5691	NM_001940	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
148089	chr20	63305371	63305930	+	0	NA	intron (NM_020882, intron 4 of 35)	intron (NM_020882, intron 4 of 35)	12464	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
199051	chr6	111485471	111485630	+	0	NA	intron (NR_034111, intron 3 of 3)	intron (NR_034111, intron 3 of 3)	-1835	NM_001286432	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
166578	chr3	118850121	118850380	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	-39417	NR_135547	105374060		NR_135547		LOC105374060	-	uncharacterized LOC105374060	ncRNA
98659	chr17	47833801	47834200	+	0	NA	intron (NM_033413, intron 2 of 7)	intron (NM_033413, intron 2 of 7)	2330	NM_033413	90506		NM_033413	ENSG00000141294	LRRC46	-	leucine rich repeat containing 46	protein-coding
132464	chr2	105875021	105875750	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	23538	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
189899	chr5	177349251	177349550	+	0	NA	intron (NM_006816, intron 2 of 7)	intron (NM_006816, intron 2 of 7)	2268	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
91520	chr17	4966531	4968680	+	0	NA	TTS (NM_001171167)	TTS (NM_001171167)	212	NM_004890	9552		NM_004890	ENSG00000091640	SPAG7	ACRP|FSA-1	sperm associated antigen 7	protein-coding
28923	chr10	63178001	63178400	+	0	NA	intron (NM_001322258, intron 21 of 24)	AluSx|SINE|Alu	44872	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
86060	chr16	57587751	57588050	+	0	NA	Intergenic	AluSz6|SINE|Alu	-31838	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
37011	chr11	12016401	12016600	+	0	NA	Intergenic	L2a|LINE|L2	-7130	NM_013253	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
56420	chr12	113308371	113308530	+	0	NA	intron (NR_152403, intron 12 of 15)	intron (NR_152403, intron 12 of 15)	16927	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
209914	chr7	92312951	92313450	+	0	NA	intron (NM_019004, intron 3 of 19)	intron (NM_019004, intron 3 of 19)	-67100	NM_001350676	889		NM_004912	ENSG00000001631	KRIT1	CAM|CCM1	KRIT1 ankyrin repeat containing	protein-coding
28892	chr10	62816161	62817500	+	0	NA	promoter-TSS (NM_001136179)	promoter-TSS (NM_001136179)	-464	NM_000399	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
25906	chr10	11293321	11293780	+	0	NA	intron (NM_001326330, intron 9 of 12)	intron (NM_001326330, intron 9 of 12)	51124	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70326	chr14	101835201	101836430	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	25952	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
150759	chr21	43785471	43785830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3927	NM_003683	8568		NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
146046	chr20	47355721	47356100	+	0	NA	intron (NM_001281772, intron 1 of 23)	intron (NM_001281772, intron 1 of 23)	526	NM_001363714	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
226217	chr9	65763151	65764000	+	0	NA	Intergenic	CpG	26429	NM_199244	349334		NM_199244	ENSG00000184659	FOXD4L4	FOXD4L2|FOXD4b|bA460E7.2	forkhead box D4 like 4	protein-coding
66635	chr14	63856871	63857030	+	0	NA	intron (NM_015180, intron 1 of 114)	AluJr|SINE|Alu	3946	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
78732	chr15	98715901	98716500	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	-64979	NR_126453	104472848		NR_126453		IRAIN	IGF1R-AS|IGF1RAS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
238040	chrX	135343751	135344300	+	0	NA	promoter-TSS (NR_110381)	promoter-TSS (NR_110381)	84	NR_110381	7626		NM_007131	ENSG00000186376	ZNF75D	D8C6|ZKSCAN24|ZNF75|ZNF82|ZSCAN28	zinc finger protein 75D	protein-coding
223279	chr8	143732101	143732500	+	0	NA	TTS (NR_039810)	TTS (NR_039810)	853	NR_039810	100616318		NR_039810	ENSG00000265660	MIR4664	-	microRNA 4664	ncRNA
196616	chr6	44253201	44253860	+	0	NA	TTS (NM_001286510)	TTS (NM_001286510)	755	NR_039790	100616124		NR_039790	ENSG00000284427	MIR4647	mir-4647	microRNA 4647	ncRNA
86095	chr16	57644701	57644900	+	0	NA	intron (NM_001370454, intron 2 of 13)	(CA)n|Simple_repeat|Simple_repeat	5308	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
139983	chr2	230919251	230919580	+	0	NA	intron (NM_005683, intron 1 of 1)	L1MD|LINE|L1	5827	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
220946	chr8	108918421	108918680	+	0	NA	Intergenic	Intergenic	-130956	NM_153015	157753		NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
237525	chrX	120301971	120302830	+	0	NA	intron (NM_001104544, intron 2 of 8)	intron (NM_001104544, intron 2 of 8)	9061	NM_001104544	55026		NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
21720	chr1	206772201	206773080	+	0	NA	promoter-TSS (NM_000572)	promoter-TSS (NM_000572)	-146	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
82466	chr16	17070671	17071880	+	0	NA	Intergenic	Intergenic	-63229	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
182555	chr5	65812671	65812830	+	0	NA	intron (NM_020726, intron 12 of 12)	intron (NM_020726, intron 12 of 12)	90545	NM_020726	57486		NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
139212	chr2	219283701	219284130	+	0	NA	intron (NM_001039550, intron 8 of 9)	MIRc|SINE|MIR	4549	NM_006736	3300		NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HMNR5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
192291	chr6	20550401	20550680	+	0	NA	intron (NM_017774, intron 4 of 15)	L1MC4a|LINE|L1	16083	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
175109	chr4	54439971	54440130	+	0	NA	Intergenic	Intergenic	107158	NR_147160	105377656		NR_147160		LINC02283	-	long intergenic non-protein coding RNA 2283	ncRNA
52026	chr12	53994021	53994450	+	0	NA	TTS (NR_047505)	TTS (NR_047505)	2497	NR_029617	406973		NR_029617	ENSG00000207924	MIR196A2	MIRN196-2|MIRN196A2|mir-196a-2	microRNA 196a-2	ncRNA
98896	chr17	48585001	48586000	+	0	NA	intron (NM_001384749, intron 1 of 4)	intron (NM_001384749, intron 1 of 4)	-3121	NM_001330322	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
41692	chr11	66633201	66634330	+	0	NA	intron (NM_001198846, intron 1 of 1)	AluSp|SINE|Alu	-4852	NM_001198843	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
95902	chr17	38895971	38897000	+	0	NA	intron (NM_006148, intron 3 of 6)	intron (NM_006148, intron 3 of 6)	-18494	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
207824	chr7	50321521	50323200	+	0	NA	intron (NM_006060, intron 2 of 7)	intron (NM_006060, intron 2 of 7)	3312	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
156225	chr22	40345501	40347500	+	0	NA	promoter-TSS (NM_001123378)	promoter-TSS (NM_001123378)	0	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
229263	chr9	117815371	117815600	+	0	NA	Intergenic	Intergenic	111082	NM_003266	7099		NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll like receptor 4	protein-coding
95371	chr17	35874171	35874530	+	0	NA	intron (NM_002985, intron 2 of 2).2	AluJb|SINE|Alu	-5459	NR_135630	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
91379	chr17	4559371	4559530	+	0	NA	exon (NM_001288702, exon 3 of 4)	exon (NM_001288702, exon 3 of 4)	1127	NM_001288703	124975		NM_153338	ENSG00000167741	GGT6	-	gamma-glutamyltransferase 6	protein-coding
67204	chr14	68928501	68929300	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	50402	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
220690	chr8	101333001	101333200	+	0	NA	Intergenic	Intergenic	-35793	NR_002182	83955		NM_032031	ENSG00000228224	NACA4P	FKSG17|NACAP1	NACA family member 4, pseudogene	pseudo
20411	chr1	198191001	198191280	+	0	NA	intron (NM_133494, intron 1 of 9)	L1MC5a|LINE|L1	34142	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
12144	chr1	100130421	100131250	+	0	NA	intron (NM_194292, intron 1 of 16)	MER58A|DNA|hAT-Charlie	2095	NM_194292	163786		NM_194292	ENSG00000156876	SASS6	MCPH14|SAS-6|SAS6	SAS-6 centriolar assembly protein	protein-coding
35272	chr11	920321	920580	+	0	NA	Intergenic	MER50|LTR|ERV1	-5359	NM_001242837	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
120196	chr19	42278651	42278750	+	0	NA	intron (NM_001379480, intron 2 of 20)	intron (NM_001379480, intron 2 of 20)	-5769	NM_001379484	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
81664	chr16	11016921	11017180	+	0	NA	intron (NM_015226, intron 10 of 22)	intron (NM_015226, intron 10 of 22)	72486	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
201320	chr6	144380421	144380680	+	0	NA	intron (NM_007124, intron 1 of 73)	AluJr|SINE|Alu	-25105	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
126014	chr2	25326651	25326750	+	0	NA	intron (NR_135490, intron 1 of 23)	LTR41|LTR|ERVL	2021	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
224308	chr9	6630871	6631250	+	0	NA	intron (NM_000170, intron 2 of 24)	intron (NM_000170, intron 2 of 24)	14669	NM_000170	2731		NM_000170	ENSG00000178445	GLDC	GCE|GCE1|GCSP|HYGN1	glycine decarboxylase	protein-coding
29534	chr10	70893271	70893430	+	0	NA	Intergenic	L1MCc|LINE|L1	-4785	NM_001323004	5092		NM_000281	ENSG00000166228	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase 1	protein-coding
194413	chr6	33070921	33071200	+	0	NA	intron (NM_001242525, intron 2 of 5).8	L3|LINE|CR1	2617	NM_033554	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
10758	chr1	77048151	77048450	+	0	NA	intron (NM_030965, intron 3 of 4)	intron (NM_030965, intron 3 of 4)	-11843	NR_106978	102466995		NR_106978	ENSG00000276081	MIR7156	hsa-mir-7156	microRNA 7156	ncRNA
195015	chr6	35454071	35454430	+	0	NA	intron (NM_021922, intron 1 of 9)	AluSx4|SINE|Alu	1912	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
215232	chr7	156886251	156886750	+	0	NA	intron (NR_146958, intron 1 of 14)	MER49|LTR|ERV1	6683	NM_001363412	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
11056	chr1	85047271	85047430	+	0	NA	intron (NM_001253693, intron 1 of 11)	intron (NM_001253693, intron 1 of 11)	1150	NM_018298	55283		NM_018298	ENSG00000055732	MCOLN3	TRP-ML3|TRPML3	mucolipin TRP cation channel 3	protein-coding
145645	chr20	44894921	44895380	+	0	NA	intron (NM_003404, intron 2 of 6)	intron (NM_003404, intron 2 of 6)	9445	NM_003404	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
25337	chr10	6241501	6241700	+	0	NA	intron (NM_001363545, intron 14 of 14)	AluJo|SINE|Alu	38668	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
38434	chr11	45146351	45147980	+	0	NA	promoter-TSS (NM_001384650)	promoter-TSS (NM_001384650)	-178	NM_001384650	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
15560	chr1	150551101	150551450	+	0	NA	promoter-TSS (NR_036211)	promoter-TSS (NR_036211)	-654	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
168976	chr3	152398351	152398880	+	0	NA	intron (NM_001314057, intron 3 of 11)	L2b|LINE|L2	-57625	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
217026	chr8	23230301	23231580	+	0	NA	TTS (NR_033928)	TTS (NR_033928)	5719	NR_033928	389641		NR_033928	ENSG00000246582	TNFRSF10A-DT	PLACT1	TNFRSF10A divergent transcript	ncRNA
232892	chr9	136846321	136846830	+	0	NA	exon (NM_001080482, exon 3 of 3)	exon (NM_001080482, exon 3 of 3)	-2834	NM_014172	29085		NM_014172	ENSG00000054148	PHPT1	CGI-202|HEL-S-132P|HSPC141|PHP|PHP14	phosphohistidine phosphatase 1	protein-coding
126387	chr2	27539971	27540600	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-36237	NM_032266	84226		NM_032266	ENSG00000221843	SPATA31H1	C2orf16	SPATA31 subfamily H member 1	protein-coding
83042	chr16	22320221	22320580	+	0	NA	intron (NM_018119, intron 13 of 20).2	AluSx1|SINE|Alu	22991	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
39200	chr11	57482651	57483430	+	0	NA	Intergenic	CpG	22512	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
140930	chr2	237725251	237725750	+	0	NA	intron (NM_001137550, intron 7 of 23)	intron (NM_001137550, intron 7 of 23)	33295	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
120168	chr19	42247601	42248050	+	0	NA	3' UTR (NM_006494, exon 4 of 4)	3' UTR (NM_006494, exon 4 of 4)	-5223	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
99970	chr17	57551371	57551730	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	-27953	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
214674	chr7	150956001	150956750	+	0	NA	promoter-TSS (NM_001204798)	promoter-TSS (NM_001204798)	-546	NM_172057	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
40195	chr11	62927321	62927580	+	0	NA	Intergenic	Intergenic	-6087	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
15595	chr1	150587171	150587530	+	0	NA	Intergenic	AluSz6|SINE|Alu	-7612	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
68781	chr14	91155051	91155680	+	0	NA	intron (NM_001286470, intron 4 of 16)	MIR|SINE|MIR	28939	NR_003709	100124539		NR_003709	ENSG00000221102	SNORA11B	-	small nucleolar RNA, H/ACA box 11B	snoRNA
87756	chr16	75248171	75248330	+	0	NA	promoter-TSS (NM_001170719).2	promoter-TSS (NM_001170719).2	-99	NM_001170719	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
155858	chr22	39469501	39470100	+	0	NA	intron (NM_002409, intron 1 of 1)	intron (NM_002409, intron 1 of 1)	7022	NR_126469	104502417		NR_126469	ENSG00000227188	MGAT3-AS1	TapSAKI	MGAT3 antisense RNA 1	ncRNA
83554	chr16	28087101	28088130	+	0	NA	Intergenic	Intergenic	-23901	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
239382	chrY	21034171	21034400	+	0	NA	Intergenic	Intergenic	278177	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
34787	chr11	218371	218780	+	0	NA	intron (NM_001370324, intron 5 of 5)	intron (NM_001370324, intron 5 of 5)	9239	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
201577	chr6	149333421	149333680	+	0	NA	intron (NM_015093, intron 1 of 8)	intron (NM_015093, intron 1 of 8)	15250	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
164108	chr3	56678221	56678480	+	0	NA	intron (NM_001365638, intron 1 of 22)	AluSx3|SINE|Alu	4887	NM_001363940	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
44719	chr11	111737201	111737600	+	0	NA	TTS (NM_001177563)	TTS (NM_001177563)	28989	NM_001177562	5519		NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
131579	chr2	96838901	96840450	+	0	NA	intron (NM_144994, intron 8 of 8)	CpG	4346	NM_144994	200539		NM_144994	ENSG00000163126	ANKRD23	DARP|MARP3	ankyrin repeat domain 23	protein-coding
105492	chr17	83087201	83087700	+	0	NA	intron (NM_001004431, intron 2 of 3).2	intron (NM_001004431, intron 2 of 3).2	6304	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
226030	chr9	42491271	42491430	+	0	NA	Intergenic	Intergenic	77999	NR_126050	103908605		NR_126050		FAM88E	-	family with sequence similarity 88 member E	ncRNA
150931	chr21	44261651	44262100	+	0	NA	promoter-TSS (NM_013369)	promoter-TSS (NM_013369)	22	NM_013369	29947		NM_013369	ENSG00000142182	DNMT3L	-	DNA methyltransferase 3 like	protein-coding
40408	chr11	64074201	64074600	+	0	NA	intron (NM_001384466, intron 1 of 2)	intron (NM_001384466, intron 1 of 2)	37718	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
216350	chr8	17026621	17027830	+	0	NA	promoter-TSS (NM_181723)	promoter-TSS (NM_181723)	-13	NR_146233	286097		NM_181723	ENSG00000155970	MICU3	EFHA2	mitochondrial calcium uptake family member 3	protein-coding
171895	chr4	793971	794380	+	0	NA	intron (NM_006651, intron 2 of 3)	intron (NM_006651, intron 2 of 3)	-12327	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
189877	chr5	177311501	177313450	+	0	NA	promoter-TSS (NM_001142935)	promoter-TSS (NM_001142935)	-577	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
38252	chr11	36508921	36509440	+	0	NA	intron (NM_145803, intron 1 of 7)	intron (NM_145803, intron 1 of 7)	1092	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
224971	chr9	33076131	33077830	+	0	NA	promoter-TSS (NM_018225)	promoter-TSS (NM_018225)	-306	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
40160	chr11	62878551	62879130	+	0	NA	intron (NM_001012662, intron 3 of 11)	AluSz|SINE|Alu	-2056	NM_001013251	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
98351	chr17	46339601	46340300	+	0	NA	intron (NM_001039083, intron 3 of 3).5	intron (NM_001039083, intron 3 of 3).5	21816	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
214773	chr7	151091371	151092030	+	0	NA	intron (NM_001350103, intron 1 of 18)	intron (NM_001350103, intron 1 of 18)	5225	NM_001350103	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
35625	chr11	1818971	1819130	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	-15377	NM_138567	90019		NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
196134	chr6	42411301	42411700	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	40551	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
125135	chr2	9948171	9948330	+	0	NA	Intergenic	AluJb|SINE|Alu	-3443	NM_198182	29841		NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
2146	chr1	8385701	8386500	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	37732	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
109930	chr19	1312421	1312750	+	0	NA	Intergenic	Intergenic	26712	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
152755	chr22	21740221	21740830	+	0	NA	Intergenic	L2|LINE|L2	-4731	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
157632	chr22	46104601	46104800	+	0	NA	intron (NR_027033, intron 4 of 5)	intron (NR_027033, intron 4 of 5)	-8049	NR_029478	406883		NR_029478	ENSG00000283990	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	ncRNA
55267	chr12	102735221	102735500	+	0	NA	Intergenic	Intergenic	89039	NR_033855	283432		NR_033855	ENSG00000258169	LINC00485	-	long intergenic non-protein coding RNA 485	ncRNA
158424	chr22	50546571	50546730	+	0	NA	exon (NM_138433, exon 1 of 1)	exon (NM_138433, exon 1 of 1)	751	NM_138433	113730		NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
144882	chr20	36922421	36923330	+	0	NA	intron (NM_001363733, intron 6 of 15)	AluJb|SINE|Alu	28833	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
43251	chr11	75529021	75529280	+	0	NA	Intergenic	L2c|LINE|L2	-3209	NM_030792	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
234721	chrX	21657401	21657800	+	0	NA	exon (NM_153270, exon 1 of 1)	exon (NM_153270, exon 1 of 1)	730	NM_153270	257240		NM_153270	ENSG00000185915	KLHL34	-	kelch like family member 34	protein-coding
108220	chr18	63175401	63175600	+	0	NA	intron (NM_000633, intron 2 of 2)	MamRep1894|DNA|hAT	144269	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
213486	chr7	139047721	139048880	+	0	NA	intron (NM_020119, intron 12 of 12)	intron (NM_020119, intron 12 of 12)	-4143	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
107849	chr18	54388751	54389050	+	0	NA	Intergenic	LTR41B|LTR|ERVL	30983	NR_110234	162681		NM_173529	ENSG00000166845	C18orf54	LAS2	chromosome 18 open reading frame 54	protein-coding
237847	chrX	130105751	130106050	+	0	NA	intron (NM_001127197, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	4597	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
68823	chr14	91269021	91270000	+	0	NA	Intergenic	Intergenic	-15630	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
60240	chr13	40569071	40569630	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	-88344	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
5676	chr1	26339071	26339480	+	0	NA	intron (NM_001039775, intron 6 of 19)	intron (NM_001039775, intron 6 of 19)	14855	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
453	chr1	1132571	1133130	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-4167	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
68992	chr14	91483151	91483450	+	0	NA	intron (NR_158976, intron 4 of 16)	intron (NR_158976, intron 4 of 16)	27010	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
203742	chr7	1154101	1154850	+	0	NA	intron (NR_158186, intron 4 of 4)	intron (NR_158186, intron 4 of 4)	5721	NM_001365381	90637		NM_182491	ENSG00000178381	ZFAND2A	AIRAP	zinc finger AN1-type containing 2A	protein-coding
65806	chr14	54773901	54774730	+	0	NA	intron (NM_001161577, intron 4 of 8)	intron (NM_001161577, intron 4 of 8)	19482	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
169804	chr3	177041051	177041380	+	0	NA	intron (NM_001374327, intron 9 of 14)	intron (NM_001374327, intron 9 of 14)	155263	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
59163	chr13	21603351	21604700	+	0	NA	exon (NM_152726, exon 1 of 12)	exon (NM_152726, exon 1 of 12)	145	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
225707	chr9	36602771	36603530	+	0	NA	intron (NM_001256693, intron 5 of 15)	intron (NM_001256693, intron 5 of 15)	30255	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
180559	chr5	14673751	14674050	+	0	NA	intron (NM_138348, intron 2 of 6)	intron (NM_138348, intron 2 of 6)	9182	NM_138348	90268		NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM|IMD107	OTU deubiquitinase with linear linkage specificity	protein-coding
74996	chr15	63938951	63939050	+	0	NA	intron (NM_014326, intron 5 of 11)	intron (NM_014326, intron 5 of 11)	10726	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
43771	chr11	86247221	86248130	+	0	NA	intron (NM_001330334, intron 1 of 9)	Charlie4a|DNA|hAT-Charlie	2922	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
1170	chr1	2215171	2215830	+	0	NA	Intergenic	Intergenic	-2780	NM_001282670	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
120072	chr19	42080321	42080780	+	0	NA	exon (NM_001330519, exon 2 of 2)	exon (NM_001330519, exon 2 of 2)	4384	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
157555	chr22	45675401	45675600	+	0	NA	intron (NM_001167621, intron 1 of 10)	MLT1F1|LTR|ERVL-MaLR	3666	NM_013236	25814		NM_013236	ENSG00000130638	ATXN10	ATX10|E46L|HUMEEP|SCA10	ataxin 10	protein-coding
194295	chr6	32700451	32700780	+	0	NA	Intergenic	Intergenic	-33958	NM_002123	3119		NM_002123	ENSG00000179344	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
48638	chr12	10394321	10395100	+	0	NA	intron (NM_001199805, intron 4 of 12)	LTR5A|LTR|ERVK	-4669	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
184551	chr5	102758801	102759000	+	0	NA	intron (NM_001364588, intron 1 of 24)	A-rich|Low_complexity|Low_complexity	3595	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
75454	chr15	65834001	65834350	+	0	NA	Intergenic	Intergenic	-35316	NM_004663	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
49805	chr12	31968451	31968750	+	0	NA	intron (NM_018169, intron 2 of 5)	AluYk12|SINE|Alu	9185	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
49491	chr12	25249821	25252030	+	0	NA	promoter-TSS (NM_001369787)	promoter-TSS (NM_001369787)	4	NM_033360	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
30604	chr10	80187271	80188950	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	16381	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
75232	chr15	64863371	64864200	+	0	NA	intron (NM_001195059, intron 4 of 4)	AluSp|SINE|Alu	21870	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
116423	chr19	18011721	18012080	+	0	NA	intron (NM_001286826, intron 7 of 7)	MER2|DNA|TcMar-Tigger	3730	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
88854	chr16	87636301	87636900	+	0	NA	intron (NM_020655, intron 1 of 4)	intron (NM_020655, intron 1 of 4)	34092	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
42987	chr11	73950901	73951180	+	0	NA	promoter-TSS (NM_001377263)	promoter-TSS (NM_001377263)	14	NM_001377263	374407		NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
26545	chr10	21548451	21548550	+	0	NA	intron (NM_001195626, intron 3 of 22)	AluYh3|SINE|Alu	14268	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
32919	chr10	110219221	110219680	+	0	NA	intron (NM_001008541, intron 1 of 4)	MER5A1|DNA|hAT-Charlie	-6546	NM_005962	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
100727	chr17	63892851	63892950	+	0	NA	Intergenic	Intergenic	3674	NM_001317	1442		NM_001317	ENSG00000136488	CSH1	CS-1|CSA|CSMT|GHB3|PL|hCS-1|hCS-A	chorionic somatomammotropin hormone 1	protein-coding
217277	chr8	27350621	27350880	+	0	NA	intron (NM_173174, intron 6 of 35)	AluSx|SINE|Alu	25186	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
57700	chr12	122854651	122855280	+	0	NA	intron (NM_001303099, intron 9 of 17)	intron (NM_001303099, intron 9 of 17)	19508	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
237341	chrX	118529771	118529930	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	33941	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
230729	chr9	128821171	128822280	+	0	NA	3' UTR (NM_016390, exon 12 of 12)	3' UTR (NM_016390, exon 12 of 12)	3225	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
136471	chr2	177209201	177209430	+	0	NA	Intergenic	AluSz|SINE|Alu	3096	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
92531	chr17	8933901	8934200	+	0	NA	intron (NM_001142633, intron 1 of 18)	L1MEf|LINE|L1	-21533	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
203411	chr7	191701	192930	+	0	NA	promoter-TSS (NM_020223)	promoter-TSS (NM_020223)	-256	NM_020223	56975		NM_020223	ENSG00000177706	FAM20C	DMP-4|DMP4|G-CK|GEF-CK|RNS	FAM20C golgi associated secretory pathway kinase	protein-coding
84402	chr16	30337721	30337980	+	0	NA	Intergenic	MIRb|SINE|MIR	-2476	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
169037	chr3	152834821	152835450	+	0	NA	promoter-TSS (NM_002563)	promoter-TSS (NM_002563)	4	NM_002563	5028		NM_002563	ENSG00000169860	P2RY1	P2Y1|SARCC	purinergic receptor P2Y1	protein-coding
70096	chr14	100207751	100208230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-31154	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
154939	chr22	37229701	37231190	+	0	NA	intron (NM_002872, intron 5 of 6)	intron (NM_002872, intron 5 of 6)	13824	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
43948	chr11	93645251	93645750	+	0	NA	Intergenic	AluSz|SINE|Alu	-16182	NM_033395	85459		NM_033395	ENSG00000166004	CEP295	KIAA1731|SCKL11	centrosomal protein 295	protein-coding
114626	chr19	12984301	12984570	+	0	NA	Intergenic	Intergenic	-11040	NM_002501	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
173875	chr4	24549871	24550030	+	0	NA	intron (NM_001358, intron 5 of 13)	AluSp|SINE|Alu	-29660	NR_030299	693158		NR_030299	ENSG00000207697	MIR573	MIRN573|hsa-mir-573|mir-573	microRNA 573	ncRNA
71798	chr15	21729571	21729730	+	0	NA	Intergenic	Intergenic	6349	NR_135666	646370		NR_135666		IGHV1OR15-3	IGHV1OR153	immunoglobulin heavy variable 1/OR15-3 (pseudogene)	pseudo
161518	chr3	42593971	42594130	+	0	NA	intron (NM_016305, intron 3 of 3)	L2a|LINE|L2	3190	NM_001370300	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
69644	chr14	97789301	97789700	+	0	NA	Intergenic	Intergenic	-26669	NR_146447	100132612		NR_146447	ENSG00000258869	LINC02312	-	long intergenic non-protein coding RNA 2312	ncRNA
214120	chr7	144193551	144194050	+	0	NA	intron (NM_001368318, intron 1 of 1)	intron (NM_001368318, intron 1 of 1)	-1521	NR_126022	101928605		NR_126022		ARHGEF35-AS1	-	ARHGEF35 antisense RNA 1	ncRNA
173340	chr4	7749501	7749900	+	0	NA	Intergenic	Intergenic	-4390	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
117074	chr19	19066471	19066630	+	0	NA	intron (NM_178526, intron 1 of 7)	AluY|SINE|Alu	2556	NM_178526	284439		NM_178526	ENSG00000181035	SLC25A42	MECREN	solute carrier family 25 member 42	protein-coding
87083	chr16	68447171	68447330	+	0	NA	intron (NM_018667, intron 1 of 8)	CpG	1258	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
220979	chr8	115425301	115425700	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	242513	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
21838	chr1	207349151	207349450	+	0	NA	intron (NM_001300903, intron 10 of 10)	AluSz|SINE|Alu	27622	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
203597	chr7	933371	934130	+	0	NA	intron (NM_006869, intron 2 of 10)	CpG	-6534	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
126881	chr2	32135171	32135600	+	0	NA	intron (NM_199436, intron 8 of 15)	AluYm1|SINE|Alu	-30456	NM_001193515	55676		NM_017964	ENSG00000152683	SLC30A6	MST103|MSTP103|ZNT6	solute carrier family 30 member 6	protein-coding
128399	chr2	55136201	55136400	+	0	NA	intron (NM_001321904, intron 1 of 9)	MER50|LTR|ERV1	1531	NM_001321904	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133599	chr2	121746201	121746600	+	0	NA	Intergenic	Intergenic	-9145	NR_048559	7247		NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
143017	chr20	20769251	20769550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-56756	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
223246	chr8	143632521	143632980	+	0	NA	Intergenic	Intergenic	-3269	NM_001261843	9831		NM_014789	ENSG00000183309	ZNF623	-	zinc finger protein 623	protein-coding
189371	chr5	172688351	172689080	+	0	NA	3' UTR (NM_001308177, exon 4 of 4)	3' UTR (NM_001308177, exon 4 of 4)	26550	NR_049799	100847029		NR_049799	ENSG00000265160	MIR5003	-	microRNA 5003	ncRNA
168588	chr3	149087671	149087830	+	0	NA	intron (NR_046648, intron 1 of 2)	AluSx1|SINE|Alu	-1196	NM_001318934	6596		NM_003071	ENSG00000071794	HLTF	HIP116|HIP116A|HLTF1|RNF80|SMARCA3|SNF2L3|ZBU1	helicase like transcription factor	protein-coding
82280	chr16	15395651	15396050	+	0	NA	promoter-TSS (NM_001128423)	promoter-TSS (NM_001128423)	96	NM_001128423	255027		NM_173803	ENSG00000156968	MPV17L	M-LPH|M-LPH1|M-LPH2|MLPH1|MLPH2|MPV17L1	MPV17 mitochondrial inner membrane protein like	protein-coding
146079	chr20	47511671	47511830	+	0	NA	intron (NM_181659, intron 1 of 22)	AluSx|SINE|Alu	9863	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
63523	chr13	114319601	114319800	+	0	NA	intron (NM_001164145, intron 1 of 2)	MER8|DNA|TcMar-Tigger	5197	NM_001164144	283489		NM_032436	ENSG00000198824	CHAMP1	C13orf8|CAMP|CHAMP|MRD40|NEDHILD|ZNF828	chromosome alignment maintaining phosphoprotein 1	protein-coding
236255	chrX	65821871	65822430	+	0	NA	Intergenic	CpG	154496	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
86325	chr16	66274451	66274930	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-92001	NM_001795	1003		NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
193647	chr6	30841701	30842100	+	0	NA	intron (NR_134610, intron 2 of 2).4	intron (NR_134610, intron 2 of 2).4	6259	NR_134610	105375014		NR_134610	ENSG00000237923	LINC02570	-	long intergenic non-protein coding RNA 2570	ncRNA
165503	chr3	100254201	100254550	+	0	NA	Intergenic	Intergenic	-6617	NM_018309	55773		NM_018309	ENSG00000036054	TBC1D23	NS4ATP1|PCH11	TBC1 domain family member 23	protein-coding
38772	chr11	47174121	47174630	+	0	NA	intron (NM_001242832, intron 4 of 14)	AluYb9|SINE|Alu	2504	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
86473	chr16	66960351	66960450	+	0	NA	promoter-TSS (NM_024922)	promoter-TSS (NM_024922)	-866	NM_001185177	23491		NM_012122	ENSG00000172828	CES3	ES31	carboxylesterase 3	protein-coding
52396	chr12	55736571	55737530	+	0	NA	Intergenic	Intergenic	-6072	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
111045	chr19	3098621	3099680	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	4788	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
149727	chr21	34192571	34192980	+	0	NA	Intergenic	Intergenic	12098	NR_027266	114036		NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
21131	chr1	203652861	203654180	+	0	NA	intron (NM_001365784, intron 1 of 20)	Tigger1|DNA|TcMar-Tigger	25583	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
179116	chr4	168856401	168856600	+	0	NA	intron (NM_001367568, intron 1 of 11)	L1PA16|LINE|L1	24405	NM_001367570	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
25139	chr10	4135951	4136250	+	0	NA	Intergenic	HAL1|LINE|L1	84374	NR_120632								
198768	chr6	108797101	108797300	+	0	NA	Intergenic	Intergenic	45546	NR_033376	387111		NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
87276	chr16	70016721	70016980	+	0	NA	intron (NR_003610, intron 13 of 25)	intron (NR_003610, intron 13 of 25)	-13496	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
8319	chr1	40143901	40144400	+	0	NA	Intergenic	Intergenic	-17237	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
35752	chr11	2140471	2141030	+	0	NA	non-coding (NR_133657, exon 1 of 3)	non-coding (NR_133657, exon 1 of 3)	193	NM_001127598	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
11783	chr1	92485601	92486500	+	0	NA	promoter-TSS (NM_001127216)	promoter-TSS (NM_001127216)	50	NM_001127216	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
128093	chr2	47901801	47902530	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluSg|SINE|Alu	3173	NM_001374325	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
23592	chr1	229692371	229692550	+	0	NA	Intergenic	Intergenic	66213	NM_014777	9816		NM_014777	ENSG00000135763	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis homolog	protein-coding
169210	chr3	157066651	157068280	+	0	NA	Intergenic	Intergenic	-14376	NR_135546	105374177		NR_135546	ENSG00000241544	LINC02029	-	long intergenic non-protein coding RNA 2029	ncRNA
117938	chr19	33174351	33174850	+	0	NA	intron (NR_135565, intron 11 of 11)	intron (NR_135565, intron 11 of 11)	-19730	NM_002333	4037		NM_002333	ENSG00000130881	LRP3	-	LDL receptor related protein 3	protein-coding
50744	chr12	48992851	48993480	+	0	NA	Intergenic	Intergenic	-5182	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
235828	chrX	49286041	49286150	+	0	NA	exon (NM_033215, exon 4 of 4)	exon (NM_033215, exon 4 of 4)	16302	NM_033215	89801		NM_033215	ENSG00000049769	PPP1R3F	HB2E|LL0XNC01-7P3.1|R3F	protein phosphatase 1 regulatory subunit 3F	protein-coding
189658	chr5	176358571	176359130	+	0	NA	intron (NM_001287336, intron 1 of 6)	AluY|SINE|Alu	2914	NM_020444	57179		NM_020444	ENSG00000122203	KIAA1191	p33MONOX|p60MONOX	KIAA1191	protein-coding
196962	chr6	52984171	52984950	+	0	NA	exon (NM_001512, exon 5 of 7)	exon (NM_001512, exon 5 of 7)	10724	NM_001512	2941		NM_001512	ENSG00000170899	GSTA4	GSTA4-4|GTA4	glutathione S-transferase alpha 4	protein-coding
52851	chr12	57104351	57105230	+	0	NA	exon (NM_001178081, exon 8 of 20)	exon (NM_001178081, exon 8 of 20)	5499	NM_001178079	6778		NM_003153	ENSG00000166888	STAT6	D12S1644|HIES6|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6	protein-coding
53331	chr12	64624701	64624900	+	0	NA	intron (NR_040718, intron 1 of 3)	AluY|SINE|Alu	-2195	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
222975	chr8	143209201	143209400	+	0	NA	Intergenic	Intergenic	-3918	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
61289	chr13	50189551	50189800	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	17657	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
65281	chr14	50021251	50021800	+	0	NA	intron (NR_131171, intron 6 of 8)	intron (NR_131171, intron 6 of 8)	-14005	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
37640	chr11	21752671	21753250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-440125	NM_213599	203859		NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|LGMDR12|TMEM16E	anoctamin 5	protein-coding
33366	chr10	117248871	117249030	+	0	NA	intron (NM_003054, intron 3 of 15)	intron (NM_003054, intron 3 of 15)	7836	NM_003054	6571		NM_003054	ENSG00000165646	SLC18A2	PKDYS2|SVAT|SVMT|VAT2|VMAT2	solute carrier family 18 member A2	protein-coding
130744	chr2	86794821	86795430	+	0	NA	intron (NR_168478, intron 2 of 7)	L2c|LINE|L2	-3411	NR_027353	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
107876	chr18	55587821	55588830	+	0	NA	promoter-TSS (NM_003199)	promoter-TSS (NM_003199)	-133	NM_001083962	6925		NM_003199	ENSG00000196628	TCF4	CDG2T|E2-2|FCD2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
155677	chr22	39042101	39042500	+	0	NA	intron (NM_001006666, intron 1 of 2)	AluSq|SINE|Alu	1436	NM_001006666	200316		NM_145298	ENSG00000128394	APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	apolipoprotein B mRNA editing enzyme catalytic subunit 3F	protein-coding
143384	chr20	28602301	28603680	+	0	NA	promoter-TSS (NR_132315)	promoter-TSS (NR_132315)	-325	NR_132315	100289097		NR_132315	ENSG00000282826	FRG1CP	-	FSHD region gene 1 family member C, pseudogene	pseudo
52158	chr12	54282701	54283730	+	0	NA	exon (NM_031157, exon 8 of 11)	exon (NM_031157, exon 8 of 11)	2489	NR_135167	3178		NM_002136	ENSG00000135486	HNRNPA1	ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|MPD3|UP 1|hnRNP A1|hnRNP-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding
179634	chr4	186189671	186189980	+	0	NA	non-coding (NR_046264, exon 1 of 1)	non-coding (NR_046264, exon 1 of 1)	1665	NR_046264	651430		NR_046264	ENSG00000279943	FLJ38576	-	uncharacterized LOC651430	ncRNA
91177	chr17	3845071	3847130	+	0	NA	exon (NM_001114118, exon 1 of 13)	exon (NM_001114118, exon 1 of 13)	146	NM_001114118	55421		NM_018553	ENSG00000074356	NCBP3	C17orf85|ELG|HSA277841	nuclear cap binding subunit 3	protein-coding
102428	chr17	75668401	75669400	+	0	NA	intron (NM_001301839, intron 2 of 9)	intron (NM_001301839, intron 2 of 9)	1562	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
76853	chr15	77891051	77891550	+	0	NA	Intergenic	Intergenic	35546	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
10278	chr1	64827951	64828250	+	0	NA	intron (NM_001366165, intron 11 of 11)	L2c|LINE|L2	83025	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
189908	chr5	177360621	177361200	+	0	NA	intron (NM_006480, intron 1 of 14)	intron (NM_006480, intron 1 of 14)	2986	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
18980	chr1	169107771	169107930	+	0	NA	intron (NM_001677, intron 1 of 5)	intron (NM_001677, intron 1 of 5)	1160	NM_001677	481		NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
937	chr1	1728421	1729280	+	0	NA	3' UTR (NM_182838, exon 6 of 6)	3' UTR (NM_182838, exon 6 of 6)	-4493	NM_001313982	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
198796	chr6	108971721	108971980	+	0	NA	intron (NM_001286609, intron 16 of 16)	AluSz|SINE|Alu	37138	NM_001199934	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
146373	chr20	49275551	49275650	+	0	NA	intron (NM_021035, intron 2 of 13)	AluJr|SINE|Alu	2457	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
20150	chr1	192598771	192598930	+	0	NA	Intergenic	MIR|SINE|MIR	23077	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
61938	chr13	78606251	78606750	+	0	NA	intron (NR_047001, intron 4 of 5)	intron (NR_047001, intron 4 of 5)	-2948	NM_006237	5457		NM_006237	ENSG00000152192	POU4F1	ATITHS|BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
233188	chr9	137200021	137201680	+	0	NA	promoter-TSS (NM_001128228)	promoter-TSS (NM_001128228)	-109	NM_001128228	286262		NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79	taperin	protein-coding
199287	chr6	111979751	111980050	+	0	NA	Intergenic	Intergenic	-70503	NR_149099	105377946		NR_149099		LINC02527	-	long intergenic non-protein coding RNA 2527	ncRNA
85874	chr16	57046651	57047330	+	0	NA	intron (NM_001384955, intron 22 of 47)	intron (NM_001384955, intron 22 of 47)	-45593	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
144750	chr20	36599951	36600380	+	0	NA	intron (NM_001199535, intron 2 of 4)	L1MB3|LINE|L1	-5614	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
4145	chr1	19342951	19343750	+	0	NA	intron (NM_001206540, intron 8 of 9)	intron (NM_001206540, intron 8 of 9)	31024	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
11821	chr1	92844771	92845130	+	0	NA	intron (NM_001252270, intron 3 of 3)	AluY|SINE|Alu	4231	NR_002444	26782		NR_002444	ENSG00000207523	SNORA66	RNU66|U66	small nucleolar RNA, H/ACA box 66	snoRNA
129180	chr2	68171901	68172500	+	0	NA	intron (NM_001329916, intron 5 of 5)	L2|LINE|L2	14312	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
15829	chr1	151339201	151339400	+	0	NA	Intergenic	AluY|SINE|Alu	7556	NM_001379416	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
97794	chr17	44768451	44768980	+	0	NA	intron (NM_001318933, intron 2 of 26)	intron (NM_001318933, intron 2 of 26)	9727	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
93596	chr17	19131901	19132500	+	0	NA	intron (NM_001129778, intron 1 of 3)	intron (NM_001129778, intron 1 of 3)	4611	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
130643	chr2	86107871	86108030	+	0	NA	intron (NM_017952, intron 1 of 23)	intron (NM_017952, intron 1 of 23)	1715	NM_017952	55037		NM_017952	ENSG00000132300	PTCD3	COXPD51|MRP-S39|mS39	pentatricopeptide repeat domain 3	protein-coding
171722	chr3	197942921	197943480	+	0	NA	intron (NM_032263, intron 4 of 11)	intron (NM_032263, intron 4 of 11)	6725	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
229686	chr9	124623971	124624330	+	0	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	-34286	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
29115	chr10	68344771	68344930	+	0	NA	3' UTR (NM_017987, exon 18 of 18)	3' UTR (NM_017987, exon 18 of 18)	-11922	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
131546	chr2	96759101	96759650	+	0	NA	Intergenic	Intergenic	-1527	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
23261	chr1	227886971	227889130	+	0	NA	Intergenic	Intergenic	53633	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
8700	chr1	42180071	42180230	+	0	NA	intron (NM_001198850, intron 12 of 12)	intron (NM_001198850, intron 12 of 12)	-15405	NM_033553	2980		NM_033553	ENSG00000197273	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A	protein-coding
115802	chr19	16393601	16394250	+	0	NA	intron (NM_021235, intron 18 of 22)	intron (NM_021235, intron 18 of 22)	69099	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
143230	chr20	24982721	24982980	+	0	NA	intron (NM_020531, intron 2 of 8)	intron (NM_020531, intron 2 of 8)	9901	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
105985	chr18	5894771	5895130	+	0	NA	intron (NM_001080209, intron 2 of 2)	CpG	1004	NM_001080209	645369		NM_001080209	ENSG00000206432	TMEM200C	TTMA	transmembrane protein 200C	protein-coding
187755	chr5	144183201	144183650	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	12552	NM_020768	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
153231	chr22	23970901	23971630	+	0	NA	TTS (NM_001355).4	TTS (NM_001355).4	3176	NM_001084392	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
22577	chr1	222738601	222739050	+	0	NA	promoter-TSS (NM_001324080)	promoter-TSS (NM_001324080)	-859	NM_001324080	400823		NM_207468	ENSG00000197520	FAM177B	-	family with sequence similarity 177 member B	protein-coding
90227	chr17	579701	580100	+	0	NA	intron (NM_018289, intron 12 of 17)	intron (NM_018289, intron 12 of 17)	-133960	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
66412	chr14	61513901	61514200	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	56144	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
11128	chr1	86503401	86504100	+	0	NA	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	34823	NM_001285	1179		NM_001285	ENSG00000016490	CLCA1	CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1	chloride channel accessory 1	protein-coding
221299	chr8	123017551	123018100	+	0	NA	intron (NM_001363963, intron 6 of 6)	intron (NM_001363963, intron 6 of 6)	7947	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
58767	chr12	132706451	132706830	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4202	NM_001170544	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
183061	chr5	73501301	73501980	+	0	NA	intron (NM_001037637, intron 2 of 5)	L2a|LINE|L2	3215	NM_001207	689		NM_001207	ENSG00000145741	BTF3	BETA-NAC|BTF3a|BTF3b|NACB	basic transcription factor 3	protein-coding
182632	chr5	66988051	66988430	+	0	NA	intron (NM_001290226, intron 1 of 26)	intron (NM_001290226, intron 1 of 26)	15914	NR_111908	101928794		NR_111908		MAST4-AS1	-	MAST4 antisense RNA 1	ncRNA
168949	chr3	152373301	152373830	+	0	NA	intron (NM_001376837, intron 2 of 9)	L1PA7|LINE|L1	-32575	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
186145	chr5	134164951	134165050	+	0	NA	intron (NM_170679, intron 3 of 5)	L1MB4|LINE|L1	11950	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
232725	chr9	136616451	136616550	+	0	NA	non-coding (NR_135288, exon 1 of 3)	non-coding (NR_135288, exon 1 of 3)	681	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
101453	chr17	67449771	67450930	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-21139	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
238454	chrX	152915601	152916030	+	0	NA	intron (NM_001178110, intron 3 of 20)	intron (NM_001178110, intron 3 of 20)	1373	NM_001178109	7739		NM_007150	ENSG00000147394	ZNF185	SCELL	zinc finger protein 185 with LIM domain	protein-coding
176530	chr4	98126251	98126370	+	0	NA	intron (NM_174952, intron 3 of 10)	L1PA10|LINE|L1	17166	NM_174952	285555		NM_174952	ENSG00000163116	STPG2	C4orf37	sperm tail PG-rich repeat containing 2	protein-coding
219157	chr8	66445851	66446350	+	0	NA	intron (NM_144650, intron 6 of 13)	intron (NM_144650, intron 6 of 13)	13596	NM_144650	137872		NM_144650	ENSG00000147576	ADHFE1	ADH8|HMFT2263|HOT	alcohol dehydrogenase iron containing 1	protein-coding
64736	chr14	34542701	34542900	+	0	NA	Intergenic	(AAATA)n|Simple_repeat|Simple_repeat	-3063	NM_001318916	55837		NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding
78474	chr15	92898651	92898950	+	0	NA	TTS (NR_037602)	TTS (NR_037602)	-1524	NM_001271	1106		NM_001271	ENSG00000173575	CHD2	DEE94|EEOC	chromodomain helicase DNA binding protein 2	protein-coding
154751	chr22	36504051	36504380	+	0	NA	exon (NM_001102371, exon 4 of 9)	exon (NM_001102371, exon 4 of 9)	2825	NM_001363041	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
179733	chr5	216151	216450	+	0	NA	intron (NM_145265, intron 2 of 2)	AluJb|SINE|Alu	1853	NM_145265	133957		NM_145265	ENSG00000164366	CCDC127	-	coiled-coil domain containing 127	protein-coding
77265	chr15	81336501	81336880	+	0	NA	intron (NM_001080532, intron 19 of 21)	intron (NM_001080532, intron 19 of 21)	12357	NR_120365	101929655		NR_120365		TMC3-AS1	-	TMC3 antisense RNA 1	ncRNA
68699	chr14	90409721	90410430	+	0	NA	Intergenic	AluSx|SINE|Alu	11825	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
98818	chr17	48371951	48372250	+	0	NA	intron (NM_001075099, intron 2 of 12)	AluSz6|SINE|Alu	58114	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
173242	chr4	6947371	6947600	+	0	NA	intron (NM_020773, intron 2 of 13)	AluYm1|SINE|Alu	-6681	NM_001330638	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
44277	chr11	102293051	102293350	+	0	NA	Intergenic	AluYm1|SINE|Alu	-24284	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
212895	chr7	130886571	130886950	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-9221	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
62297	chr13	98994171	98994330	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-16186	NM_001130050	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
72093	chr15	28918501	28918730	+	0	NA	intron (NM_001379685, intron 2 of 15)	(GTGGGG)n|Simple_repeat|Simple_repeat	-3022	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
144007	chr20	33291671	33292030	+	0	NA	intron (NM_033197, intron 5 of 15)	MIR3|SINE|MIR	8636	NM_033197	92747		NM_033197	ENSG00000125999	BPIFB1	C20orf114|LPLUNC1	BPI fold containing family B member 1	protein-coding
141687	chr2	241810071	241811350	+	0	NA	promoter-TSS (NM_001167599)	promoter-TSS (NM_001167599)	-686	NM_001167599	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
80070	chr16	1985451	1985750	+	0	NA	intron (NM_005262, intron 2 of 2)	intron (NM_005262, intron 2 of 2)	1407	NM_005262	2671		NM_005262	ENSG00000127554	GFER	ALR|ERV1|HERV1|HPO|HPO1|HPO2|HSS|MMCHD|MPMCD	growth factor, augmenter of liver regeneration	protein-coding
229112	chr9	114396651	114396950	+	0	NA	Intergenic	Intergenic	-2395	NM_030767	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
31403	chr10	95374671	95374850	+	0	NA	intron (NM_001034954, intron 17 of 30)	Tigger16a|DNA|TcMar-Tigger	66420	NM_001034954	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
77290	chr15	82298121	82299450	+	0	NA	non-coding (NR_045529, exon 2 of 24)	non-coding (NR_045529, exon 2 of 24)	5502	NR_045529	390660		NR_045529	ENSG00000274376	ADAMTS7P1	ADAMTS7P2	ADAMTS7 pseudogene 1	pseudo
50393	chr12	47276401	47277380	+	0	NA	Intergenic	Intergenic	30509	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
113448	chr19	9834571	9836250	+	0	NA	promoter-TSS (NR_038830)	promoter-TSS (NR_038830)	92	NM_006221	5300		NM_006221	ENSG00000127445	PIN1	DOD|UBL5	peptidylprolyl cis/trans isomerase, NIMA-interacting 1	protein-coding
98111	chr17	45618771	45619230	+	0	NA	Intergenic	AluSx|SINE|Alu	-1329	NR_138259	147081		NM_152466	ENSG00000293460	LINC02210	C17orf69|CRHR1-IT1	long intergenic non-protein coding RNA 2210	ncRNA
146542	chr20	49980201	49980400	+	0	NA	Intergenic	L1ME3D|LINE|L1	-2680	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
88039	chr16	81429021	81429500	+	0	NA	Intergenic	Intergenic	-15910	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
148617	chr21	5519201	5519400	+	0	NA	Intergenic	Intergenic	-34337	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
206119	chr7	27244551	27245150	+	0	NA	intron (NM_001304520, intron 2 of 3)	intron (NM_001304520, intron 2 of 3)	2048	NM_001304520	2128		NM_001989	ENSG00000106038	EVX1	EVX-1	even-skipped homeobox 1	protein-coding
6967	chr1	31771771	31773550	+	0	NA	Intergenic	CpG	-8320	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
136117	chr2	173942401	173943000	+	0	NA	intron (NM_001172712, intron 4 of 6)	L2a|LINE|L2	21180	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
198047	chr6	90190521	90191250	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	105958	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
219385	chr8	70405201	70405780	+	0	NA	Intergenic	Intergenic	-1273	NM_001321703	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
203177	chr6	167118851	167118950	+	0	NA	intron (NM_004367, intron 1 of 2)	intron (NM_004367, intron 1 of 2)	-3853	NM_031409	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
56091	chr12	110687651	110688000	+	0	NA	intron (NM_032369, intron 2 of 7)	intron (NM_032369, intron 2 of 7)	1290	NM_032369	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
32435	chr10	102507371	102507730	+	0	NA	intron (NM_001178133, intron 1 of 10)	intron (NM_001178133, intron 1 of 10)	3578	NM_001178133	51684		NM_016169	ENSG00000107882	SUFU	BCNS2|JBTS32|PRO1280|SUFUH|SUFUXL	SUFU negative regulator of hedgehog signaling	protein-coding
133179	chr2	112884621	112885350	+	0	NA	Intergenic	Intergenic	-26180	NM_173203	27178		NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-23|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
120549	chr19	44953501	44953700	+	0	NA	promoter-TSS (NM_001282176)	promoter-TSS (NM_001282176)	-985	NM_001282176	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
199751	chr6	125807471	125807630	+	0	NA	intron (NR_126386, intron 1 of 2)	L3|LINE|CR1	11308	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
122827	chr19	50415771	50416450	+	0	NA	intron (NM_002691, intron 22 of 26)	intron (NM_002691, intron 22 of 26)	-2828	NM_003121	6689		NM_003121	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor	protein-coding
148789	chr21	8225301	8226000	+	0	NA	intron (NR_038958, intron 5 of 6)	AluSp|SINE|Alu	11762	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
49365	chr12	22333551	22334170	+	0	NA	intron (NM_001304450, intron 1 of 3)	intron (NM_001304450, intron 1 of 3)	854	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
204401	chr7	3045171	3045330	+	0	NA	Intergenic	L1PB3|LINE|L1	-1383	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
32957	chr10	110441371	110442130	+	0	NA	Intergenic	AluY|SINE|Alu	-56157	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
95063	chr17	32755021	32755350	+	0	NA	intron (NM_015194, intron 11 of 21)	intron (NM_015194, intron 11 of 21)	121939	NM_015194	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
51208	chr12	50529651	50529750	+	0	NA	intron (NM_173602, intron 1 of 37)	AluSx|SINE|Alu	24715	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
161040	chr3	38004501	38005100	+	0	NA	intron (NM_015873, intron 16 of 19)	intron (NM_015873, intron 16 of 19)	10662	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
152583	chr22	21162771	21162930	+	0	NA	Intergenic	AluSc|SINE|Alu	-5015	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
84970	chr16	31423051	31423350	+	0	NA	intron (NM_001318185, intron 24 of 29)	intron (NM_001318185, intron 24 of 29)	5160	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
111469	chr19	3944021	3944480	+	0	NA	Intergenic	L1MB3|LINE|L1	10779	NM_001375469	27231		NM_014446	ENSG00000077009	NMRK2	ITGB1BP3|MIBP|NRK2	nicotinamide riboside kinase 2	protein-coding
215798	chr8	2205371	2205750	+	0	NA	Intergenic	Intergenic	128971	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
141719	chr2	241853651	241854200	+	0	NA	intron (NM_005018, intron 1 of 4)	intron (NM_005018, intron 1 of 4)	4969	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
125429	chr2	11784671	11785550	+	0	NA	intron (NM_145693, intron 9 of 19)	CpG-15778	17666	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
97343	chr17	43281871	43282100	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	2344	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
49390	chr12	22431951	22432050	+	0	NA	Intergenic	L1P4|LINE|L1	-97286	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
139163	chr2	219175821	219177400	+	0	NA	intron (NM_001321389, intron 2 of 8)	CpG	315	NR_135629	27013		NM_015680	ENSG00000115649	CNPPD1	C2orf24|CGI-57	cyclin Pas1/PHO80 domain containing 1	protein-coding
4033	chr1	18946051	18946150	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	10576	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
19766	chr1	182084271	182084430	+	0	NA	Intergenic	Intergenic	-22638	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
63272	chr13	113959021	113959930	+	0	NA	intron (NM_001365455, intron 6 of 6)	intron (NM_001365455, intron 6 of 6)	14601	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
154287	chr22	31677971	31678500	+	0	NA	Intergenic	L2|LINE|L2	-15671	NM_001326421	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
175550	chr4	75509271	75509700	+	0	NA	promoter-TSS (NR_103725)	promoter-TSS (NR_103725)	-189	NR_103725	25898		NM_015436	ENSG00000163743	RCHY1	ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363	ring finger and CHY zinc finger domain containing 1	protein-coding
230296	chr9	127946471	127946830	+	0	NA	intron (NM_203305, intron 3 of 7)	intron (NM_203305, intron 3 of 7)	4064	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
122545	chr19	49647351	49647650	+	0	NA	intron (NM_021228, intron 6 of 10)	intron (NM_021228, intron 6 of 10)	5291	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
7844	chr1	36342721	36343480	+	0	NA	intron (NM_032017, intron 11 of 11)	intron (NM_032017, intron 11 of 11)	-18946	NM_018166	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
123794	chr19	55151701	55152480	+	0	NA	intron (NM_000363, intron 7 of 7)	intron (NM_000363, intron 7 of 7)	-2884	NM_001126132	7138		NM_003283	ENSG00000105048	TNNT1	ANM|NEM5|STNT|TNT|TNTS	troponin T1, slow skeletal type	protein-coding
143332	chr20	25698201	25698400	+	0	NA	Intergenic	L1MA4|LINE|L1	-1447	NM_015655	26152		NM_015655	ENSG00000130684	ZNF337	-	zinc finger protein 337	protein-coding
46170	chr11	123100651	123101150	+	0	NA	intron (NM_024769, intron 1 of 6)	intron (NM_024769, intron 1 of 6)	-38764	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
79954	chr16	1768171	1768330	+	0	NA	exon (NM_001040439, exon 29 of 31)	exon (NM_001040439, exon 29 of 31)	3459	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
221726	chr8	127496371	127496630	+	0	NA	Intergenic	MIRb|SINE|MIR	-14361	NR_117100	727677		NR_024393	ENSG00000246228	CASC8	CARLO1|CARLo-1|LINC00860	cancer susceptibility 8	ncRNA
3148	chr1	12550751	12551050	+	0	NA	Intergenic	L1ME3|LINE|L1	28123	NR_106788	102466722		NR_106788	ENSG00000276830	MIR6730	hsa-mir-6730	microRNA 6730	ncRNA
179682	chr4	190068051	190068630	+	0	NA	TTS (NR_121644)	TTS (NR_121644)	3111	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
119215	chr19	39454521	39454780	+	0	NA	intron (NM_001111020, intron 3 of 29)	intron (NM_001111020, intron 3 of 29)	9002	NM_003169	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
159295	chr3	12985251	12985650	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	1651	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
215766	chr8	2086471	2087030	+	0	NA	intron (NM_003970, intron 14 of 36).2	MIR3|SINE|MIR	10161	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
73749	chr15	45393951	45394150	+	0	NA	intron (NM_001321015, intron 3 of 11)	intron (NM_001321015, intron 3 of 11)	8177	NM_001321015	2628		NM_001482	ENSG00000171766	GATM	AGAT|AT|CCDS3|FRTS|FRTS1|RFS	glycine amidinotransferase	protein-coding
91601	chr17	5287621	5287880	+	0	NA	intron (NM_001291581, intron 1 of 16)	AluJb|SINE|Alu	5466	NM_001083585	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
95609	chr17	37547021	37547280	+	0	NA	intron (NM_001163544, intron 13 of 20).2	intron (NM_001163544, intron 13 of 20).2	57259	NM_007026	11072		NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
45991	chr11	121508171	121508730	+	0	NA	intron (NM_003105, intron 6 of 47)	L1MB7|LINE|L1	-26661	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
26643	chr10	22550171	22550330	+	0	NA	intron (NM_001330062, intron 7 of 9)	intron (NM_001330062, intron 7 of 9)	-112321	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
41999	chr11	67394851	67395150	+	0	NA	intron (NM_004584, intron 5 of 10)	AluSz|SINE|Alu	1695	NM_001243224	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
217522	chr8	29248621	29248880	+	0	NA	intron (NM_015254, intron 1 of 39)	L1MB8|LINE|L1	14320	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
109803	chr19	1155771	1156330	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	18218	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
124325	chr19	58154321	58155390	+	0	NA	Intergenic	CpG	-4066	NM_024620	79673		NM_024620	ENSG00000181894	ZNF329	-	zinc finger protein 329	protein-coding
230268	chr9	127916591	127917700	+	0	NA	promoter-TSS (NM_175039)	promoter-TSS (NM_175039)	-104	NM_175039	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
182783	chr5	68432701	68433250	+	0	NA	Intergenic	Intergenic	140398	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
188661	chr5	157248721	157249550	+	0	NA	intron (NM_005546, intron 16 of 16)	intron (NM_005546, intron 16 of 16)	-16988	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
180100	chr5	1167551	1168450	+	0	NA	Intergenic	Intergenic	10605	NR_109911	101928857		NR_109911	ENSG00000249201	TERLR1	CTD-3080P12.3	TERT regulating lncRNA 1	ncRNA
8584	chr1	41381921	41382750	+	0	NA	exon (NM_001291281, exon 3 of 3)	exon (NM_001291281, exon 3 of 3)	-6666	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
13047	chr1	111334171	111334550	+	0	NA	Intergenic	L1M3f|LINE|L1	-12200	NR_125338	128344		NM_181643	ENSG00000173947	CIMAP3	C1orf88|PIFO|pitchfork	ciliary microtubule associated protein 3	protein-coding
24767	chr1	248847771	248848530	+	0	NA	exon (NM_024836, exon 4 of 4)	exon (NM_024836, exon 4 of 4)	9926	NM_024836	79894		NM_024836	ENSG00000171161	ZNF672	-	zinc finger protein 672	protein-coding
197840	chr6	88351251	88351350	+	0	NA	Intergenic	L1PA3|LINE|L1	-183951	NM_001370547	1268		NM_016083	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1	protein-coding
33806	chr10	123156871	123157050	+	0	NA	intron (NM_004725, intron 3 of 7)	AluSg|SINE|Alu	2558	NM_004725	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
231976	chr9	133187071	133187230	+	0	NA	Intergenic	Intergenic	22100	NM_001288987	29989		NM_014581	ENSG00000171102	OBP2B	LCN14|OBPIIb	odorant binding protein 2B	protein-coding
169312	chr3	158795001	158795200	+	0	NA	Intergenic	Intergenic	-6954	NM_022736	64747		NM_022736	ENSG00000118855	MFSD1	Minerva|SMAP4	major facilitator superfamily domain containing 1	protein-coding
197375	chr6	73480801	73481200	+	0	NA	exon (NM_001123226, exon 8 of 13)	exon (NM_001123226, exon 8 of 13)	19263	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
225444	chr9	35102521	35103900	+	0	NA	promoter-TSS (NM_001287031)	promoter-TSS (NM_001287031)	-15	NM_001287031	30968		NM_013442	ENSG00000165283	STOML2	HSPC108|SLP-2	stomatin like 2	protein-coding
188805	chr5	158174771	158175130	+	0	NA	Intergenic	Intergenic	234823	NR_109888	101927697		NR_109888	ENSG00000276778	LINC02227	-	long intergenic non-protein coding RNA 2227	ncRNA
12088	chr1	99784701	99785300	+	0	NA	Intergenic	Intergenic	-18365	NM_001361041	391059		NM_001013660	ENSG00000156869	FRRS1	SDFR2|SDR2	ferric chelate reductase 1	protein-coding
123693	chr19	55015901	55016850	+	0	NA	intron (NM_001083899, intron 6 of 7).8	MIRb|SINE|MIR	21889	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
210899	chr7	101178801	101179630	+	0	NA	promoter-TSS (NM_001369695)	promoter-TSS (NM_001369695)	21	NM_001369695	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
120988	chr19	45734551	45734900	+	0	NA	intron (NM_001310124, intron 1 of 14)	AluJo|SINE|Alu	1286	NM_001310124	388553		NM_001310124	ENSG00000237452	MEIOSIN	BHMG1|HMGDC	meiosis initiator	protein-coding
45782	chr11	119305071	119305870	+	0	NA	3' UTR (NM_005188, exon 16 of 16)	3' UTR (NM_005188, exon 16 of 16)	7542	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
220524	chr8	100683721	100684180	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	19074	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
63625	chr14	20655921	20656800	+	0	NA	Intergenic	Intergenic	-14669	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
235235	chrX	41382901	41384500	+	0	NA	Intergenic	Intergenic	49534	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
191344	chr6	7129251	7130630	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	21979	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
18145	chr1	160752551	160752650	+	0	NA	intron (NM_021181, intron 6 of 6)	intron (NM_021181, intron 6 of 6)	13353	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
214397	chr7	149789821	149790500	+	0	NA	intron (NR_163594, intron 29 of 102)	intron (NR_163594, intron 29 of 102)	14118	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
182684	chr5	67515801	67516400	+	0	NA	Intergenic	AluSx|SINE|Alu	130689	NR_147169	105379006		NR_147169	ENSG00000249736	LINC02242	-	long intergenic non-protein coding RNA 2242	ncRNA
137508	chr2	197169701	197169900	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-28191	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
83213	chr16	23678371	23679580	+	0	NA	promoter-TSS (NM_005030)	promoter-TSS (NM_005030)	86	NM_005030	5347		NM_005030	ENSG00000166851	PLK1	PLK|STPK13	polo like kinase 1	protein-coding
199939	chr6	127906621	127907620	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-6039	NM_001164685	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
140803	chr2	236343451	236343750	+	0	NA	intron (NM_001270585, intron 16 of 18)	intron (NM_001270585, intron 16 of 18)	-79255	NM_212556	401036		NM_212556	ENSG00000182177	ASB18	ASB-18	ankyrin repeat and SOCS box containing 18	protein-coding
53430	chr12	65122371	65122530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1145	NM_007191	11197		NM_007191	ENSG00000156076	WIF1	WIF-1	WNT inhibitory factor 1	protein-coding
5077	chr1	24680371	24680730	+	0	NA	Intergenic	AluSc|SINE|Alu	36971	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
198229	chr6	98847371	98847530	+	0	NA	Intergenic	Intergenic	12876	NM_005604	5454		NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
71716	chr15	20347921	20348900	+	0	NA	Intergenic	AluJo|SINE|Alu	65666	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
193403	chr6	30437921	30438500	+	0	NA	Intergenic	AluJb|SINE|Alu	-51299	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
238518	chrX	153686221	153686480	+	0	NA	intron (NM_001366975, intron 2 of 12)	intron (NM_001366975, intron 2 of 12)	1421	NM_001366975	139728		NM_198452	ENSG00000130822	PNCK	BSTK3|CaMK1b	pregnancy up-regulated nonubiquitous CaM kinase	protein-coding
223318	chr8	143817101	143817300	+	0	NA	intron (NM_001362895, intron 11 of 12)	intron (NM_001362895, intron 11 of 12)	-1427	NM_015356	23513		NM_015356	ENSG00000180900	SCRIB	CRIB1|SCRB1|SCRIB1|Vartul|oSCRIB	scribble planar cell polarity protein	protein-coding
51186	chr12	50281771	50282300	+	0	NA	intron (NM_001113546, intron 1 of 10)	intron (NM_001113546, intron 1 of 10)	1485	NM_016357	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
70018	chr14	100086171	100086750	+	0	NA	intron (NM_016337, intron 2 of 13)	intron (NM_016337, intron 2 of 13)	21038	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
14407	chr1	144277551	144278030	+	0	NA	intron (NR_136328, intron 9 of 9)	intron (NR_136328, intron 9 of 9)	-1028	NR_111001	1818		NR_111001		DRD5P2	-	dopamine receptor D5 pseudogene 2	pseudo
52582	chr12	56177151	56177450	+	0	NA	intron (NM_003075, intron 15 of 27)	AluJr|SINE|Alu	12183	NM_001130420	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
115087	chr19	14223201	14223400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17131	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
208923	chr7	74065471	74065630	+	0	NA	intron (NM_001278918, intron 25 of 27)	AluSx1|SINE|Alu	-18254	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
131924	chr2	98909821	98910080	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	26275	NM_207362	343990		NM_207362	ENSG00000196872	CRACDL	C2orf55|KIAA1211L	CRACD like	protein-coding
209233	chr7	75742071	75742750	+	0	NA	Intergenic	AluJr|SINE|Alu	-3469	NM_005338	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
20310	chr1	197391251	197392200	+	0	NA	intron (NM_201253, intron 5 of 11)	intron (NM_201253, intron 5 of 11)	123473	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
49020	chr12	14273271	14273430	+	0	NA	Intergenic	MIRb|SINE|MIR	-92282	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
15693	chr1	150980901	150981700	+	0	NA	promoter-TSS (NM_003568)	promoter-TSS (NM_003568)	-992	NM_003568	8416		NM_003568	ENSG00000143412	ANXA9	ANX31	annexin A9	protein-coding
121673	chr19	47503321	47503980	+	0	NA	intron (NR_038456, intron 1 of 11)	intron (NR_038456, intron 1 of 11)	11413	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
5025	chr1	24501221	24503690	+	0	NA	promoter-TSS (NR_045407)	promoter-TSS (NR_045407)	-73	NR_045407	100750325		NR_045407	ENSG00000286061	RCAN3AS	-	RCAN3 antisense RNA	ncRNA
54892	chr12	95858401	95859980	+	0	NA	promoter-TSS (NR_135014)	promoter-TSS (NR_135014)	238	NM_003095	6636		NM_003095	ENSG00000139343	SNRPF	SMF|Sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding
95470	chr17	36192001	36193030	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	3791	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
156838	chr22	41951951	41952280	+	0	NA	promoter-TSS (NR_024355)	promoter-TSS (NR_024355)	-72	NR_024355								
231588	chr9	131533571	131533900	+	0	NA	Intergenic	AluSz|SINE|Alu	-2460	NR_134667	83549		NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
1217	chr1	2266721	2266980	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	38531	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
201222	chr6	143555071	143555850	+	0	NA	intron (NR_027113, intron 2 of 2)	intron (NR_027113, intron 2 of 2)	6591	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
160627	chr3	31537451	31537750	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	4675	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
54923	chr12	96191401	96192500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2425	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
105504	chr17	83098621	83099000	+	0	NA	Intergenic	Intergenic	17664	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
186410	chr5	135466051	135466650	+	0	NA	Intergenic	Intergenic	-13999	NM_001099221	497189		NM_001099221	ENSG00000255833	TIFAB	-	TIFA inhibitor	protein-coding
225050	chr9	33169071	33169430	+	0	NA	intron (NR_108108, intron 1 of 3)	L2a|LINE|L2	1391	NR_108108	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
215330	chr7	157359551	157360050	+	0	NA	intron (NM_001363676, intron 2 of 6)	AluJo|SINE|Alu	22796	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
233996	chrX	2928021	2929250	+	0	NA	intron (NM_009589, intron 1 of 6)	CpG	704	NM_009589	414		NM_001669	ENSG00000006756	ARSD	ASD	arylsulfatase D	protein-coding
135661	chr2	168455851	168458030	+	0	NA	intron (NM_203463, intron 1 of 9)	CpG	668	NM_001256126	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
177641	chr4	121217371	121217730	+	0	NA	promoter-TSS (NM_001128843)	promoter-TSS (NM_001128843)	-923	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
129648	chr2	70189801	70191650	+	0	NA	promoter-TSS (NM_001348758)	promoter-TSS (NM_001348758)	-14	NM_001348763	54980		NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
132708	chr2	109030101	109030300	+	0	NA	Intergenic	Intergenic	-40980	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
52318	chr12	54957201	54957400	+	0	NA	intron (NR_147064, intron 10 of 11)	intron (NR_147064, intron 10 of 11)	16432	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
120576	chr19	44997221	44997830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3939	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
214891	chr7	151416471	151416830	+	0	NA	Intergenic	Intergenic	-5938	NM_001284261	349136		NM_198285	ENSG00000187260	WDR86	-	WD repeat domain 86	protein-coding
74918	chr15	63672421	63673700	+	0	NA	intron (NM_003922, intron 38 of 77)	intron (NM_003922, intron 38 of 77)	-72233	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
29355	chr10	69568721	69568980	+	0	NA	Intergenic	MIR3|SINE|MIR	4572	NM_020999	50674		NM_020999	ENSG00000122859	NEUROG3	Atoh5|Math4B|NGN-3|bHLHa7|ngn3	neurogenin 3	protein-coding
170942	chr3	194329721	194329980	+	0	NA	Intergenic	Intergenic	-17046	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
35523	chr11	1561821	1562300	+	0	NA	intron (NM_004420, intron 3 of 6)	intron (NM_004420, intron 3 of 6)	10211	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
133146	chr2	112680421	112680880	+	0	NA	Intergenic	Intergenic	34711	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
72475	chr15	32534071	32534530	+	0	NA	promoter-TSS (NR_036650).2	promoter-TSS (NR_036650).2	-559	NR_036650	100288615		NR_036650		WHAMMP1	WHDC1P1	WHAMM pseudogene 1	pseudo
135805	chr2	169928501	169928780	+	0	NA	intron (NM_172070, intron 17 of 38)	intron (NM_172070, intron 17 of 38)	101186	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
27228	chr10	29377221	29377630	+	0	NA	Intergenic	AluSx|SINE|Alu	-32109	NR_110925	102724316		NR_003930	ENSG00000291093	SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
195154	chr6	35728961	35729530	+	0	NA	promoter-TSS (NM_001145775)	promoter-TSS (NM_001145775)	-662	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
38506	chr11	45882971	45884200	+	0	NA	TTS (NM_001127457)	TTS (NM_001127457)	-2066	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
233640	chrX	725871	726030	+	0	NA	Intergenic	AluY|SINE|Alu	101606	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
126155	chr2	26244051	26245830	+	0	NA	promoter-TSS (NM_000182)	promoter-TSS (NM_000182)	1	NM_001281513	3032		NM_000183	ENSG00000138029	HADHB	ECHB|MSTP029|MTPB|MTPD|MTPD2|TP-BETA	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta	protein-coding
72323	chr15	31261471	31261630	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-30688	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
127745	chr2	43604801	43605290	+	0	NA	Intergenic	Intergenic	-8999	NM_001345923	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
202405	chr6	157871621	157871880	+	0	NA	intron (NM_016224, intron 2 of 17)	intron (NM_016224, intron 2 of 17)	48504	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
212722	chr7	129823701	129823900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-48786	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
50023	chr12	43260221	43260300	+	0	NA	Intergenic	Intergenic	104945	NR_146866	105369740		NR_146866	ENSG00000258331	LINC02461	-	long intergenic non-protein coding RNA 2461	ncRNA
80463	chr16	2689851	2690330	+	0	NA	intron (NM_018992, intron 1 of 5)	intron (NM_018992, intron 1 of 5)	7567	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
187583	chr5	142821871	142822400	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	46775	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
215284	chr7	157151721	157151980	+	0	NA	intron (NM_014671, intron 1 of 22)	intron (NM_014671, intron 1 of 22)	12924	NM_014671	9690		NM_014671	ENSG00000009335	UBE3C	HECTH2|NDSMBA|NEDSMBA|RAUL	ubiquitin protein ligase E3C	protein-coding
56321	chr12	112752501	112752800	+	0	NA	intron (NM_001347952, intron 1 of 21)	intron (NM_001347952, intron 1 of 21)	-38888	NM_001347953	22895		NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding
121774	chr19	47769601	47770000	+	0	NA	promoter-TSS (NR_132382)	promoter-TSS (NR_132382)	-960	NR_132382	106144593		NR_132382	ENSG00000269656	NOP53-AS1	GLTSCR2-AS1	NOP53 antisense RNA 1	ncRNA
139310	chr2	219531871	219532280	+	0	NA	exon (NM_018674, exon 3 of 10)	exon (NM_018674, exon 3 of 10)	11022	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
149138	chr21	17784711	17785550	+	0	NA	intron (NR_038870, intron 2 of 2)	L2|LINE|L2	7379	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
129960	chr2	73963521	73964300	+	0	NA	intron (NR_104030, intron 1 of 1)	LTR65|LTR|ERV1	17529	NR_104030	100874048		NR_104029		DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
157783	chr22	46761121	46761380	+	0	NA	Intergenic	Intergenic	-1367	NM_001284303	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
67046	chr14	67672251	67672350	+	0	NA	intron (NM_006370, intron 1 of 5)	AluJb|SINE|Alu	2332	NM_006370	10490		NM_006370	ENSG00000100568	VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
92707	chr17	14190721	14191100	+	0	NA	intron (NM_001303, intron 5 of 6)	intron (NM_001303, intron 5 of 6)	45952	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
76447	chr15	74818301	74819150	+	0	NA	exon (NM_021819, exon 5 of 14)	exon (NM_021819, exon 5 of 14)	5890	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
93518	chr17	19018921	19019450	+	0	NA	intron (NM_001282417, intron 11 of 14)	L2a|LINE|L2	-14421	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
82855	chr16	21519701	21520880	+	0	NA	non-coding (NR_002594, exon 1 of 1)	non-coding (NR_002594, exon 1 of 1)	154	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
83335	chr16	24972721	24973330	+	0	NA	intron (NM_018054, intron 3 of 18)	AluSz6|SINE|Alu	42344	NM_001006634	55114		NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
66533	chr14	61761931	61763430	+	0	NA	intron (NM_003082, intron 1 of 9)	intron (NM_003082, intron 1 of 9)	260	NM_003082	6617		NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
105165	chr17	82263151	82263930	+	0	NA	intron (NM_139062, intron 2 of 9)	intron (NM_139062, intron 2 of 9)	10160	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
123288	chr19	53549021	53549830	+	0	NA	intron (NM_001317113, intron 2 of 4)	LTR26C|LTR|ERV1	-5074	NM_001253801	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
108322	chr18	63518351	63518700	+	0	NA	Intergenic	MIR3|SINE|MIR	-23844	NM_001307928	89777		NM_080474	ENSG00000166634	SERPINB12	YUKOPIN	serpin family B member 12	protein-coding
146797	chr20	50937051	50937550	+	0	NA	intron (NM_001317036, intron 6 of 7)	UCON71_Crp|Unknown|Unknown	-5863	NM_181442	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
122321	chr19	49135871	49136230	+	0	NA	intron (NR_103842, intron 14 of 28)	intron (NR_103842, intron 14 of 28)	16506	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
156467	chr22	41256421	41257100	+	0	NA	exon (NM_001317930, exon 8 of 16)	exon (NM_001317930, exon 8 of 16)	-3710	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
200409	chr6	134534651	134534950	+	0	NA	intron (NR_125856, intron 1 of 2)	ERVL-E-int|LTR|ERVL	5205	NR_125855	101928304		NR_125855	ENSG00000232310	LINC03002	-	long intergenic non-protein coding RNA 3002	ncRNA
239334	chrY	19077021	19077830	+	0	NA	non-coding (NR_001543, exon 1 of 2)	non-coding (NR_001543, exon 1 of 2)	122	NR_125735	83869		NM_031932	ENSG00000176728	TTTY14	CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14	testis expressed transcript, Y-linked 14	ncRNA
130407	chr2	85332301	85332500	+	0	NA	Intergenic	AluSz|SINE|Alu	-4411	NM_001368095	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
63752	chr14	21236921	21238300	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	-30710	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
124541	chr2	317521	318450	+	0	NA	non-coding (NR_146953, exon 2 of 4)	non-coding (NR_146953, exon 2 of 4)	1701	NR_146953	105373350		NR_146953		LINC01865	-	long intergenic non-protein coding RNA 1865	ncRNA
170024	chr3	180988851	180990450	+	0	NA	promoter-TSS (NM_001190233)	promoter-TSS (NM_001190233)	86	NM_145261	131118		NM_145261	ENSG00000205981	DNAJC19	PAM18|TIM14|TIMM14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding
93382	chr17	18255221	18255580	+	0	NA	intron (NM_001256265, intron 3 of 28).2	L2c|LINE|L2	3338	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
16268	chr1	153993261	153994980	+	0	NA	intron (NM_207308, intron 38 of 39)	AluJo|SINE|Alu	3358	NM_001030	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
161454	chr3	42159321	42160180	+	0	NA	promoter-TSS (NM_014965)	promoter-TSS (NM_014965)	-443	NM_014965	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
29406	chr10	70165901	70166350	+	0	NA	intron (NM_001142648, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	4389	NM_001142648	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
65366	chr14	50529551	50530230	+	0	NA	intron (NM_198794, intron 2 of 31)	L2a|LINE|L2	2679	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
33281	chr10	114540701	114542000	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	-14437	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
231949	chr9	133136771	133136930	+	0	NA	intron (NM_001042368, intron 1 of 17)	AluSz|SINE|Alu	-5693	NM_001271774	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
57934	chr12	123618071	123619050	+	0	NA	intron (NR_135105, intron 11 of 13)	intron (NR_135105, intron 11 of 13)	1850	NR_145743	109616977		NR_145743	ENSG00000206897	SNORA9B	-	small nucleolar RNA, H/ACA box 9B	snoRNA
101947	chr17	74531421	74531680	+	0	NA	promoter-TSS (NM_174892)	promoter-TSS (NM_174892)	-75	NM_174892	124599		NM_174892	ENSG00000178789	CD300LB	CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5	CD300 molecule like family member b	protein-coding
239001	chrX	156013151	156013650	+	0	NA	Intergenic	Intergenic	3430	NR_138048	100128260		NR_138048	ENSG00000185203	WASIR1	NCRNA00286B	WASH and IL9R antisense RNA 1	ncRNA
32612	chr10	103606901	103607500	+	0	NA	intron (NM_014631, intron 12 of 13)	SVA_D|Retroposon|SVA	71015	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
100138	chr17	58487371	58488250	+	0	NA	exon (NM_001080439, exon 1 of 6)	exon (NM_001080439, exon 1 of 6)	598	NM_001080439	124535		NM_001080439	ENSG00000176160	HSF5	HSF 5|HSTF 5	heat shock transcription factor 5	protein-coding
119493	chr19	40462821	40463630	+	0	NA	intron (NM_000713, intron 1 of 4)	MIRb|SINE|MIR	2520	NM_000713	645		NM_000713	ENSG00000090013	BLVRB	BVRB|FLR|HEL-S-10|SDR43U1	biliverdin reductase B	protein-coding
159413	chr3	13493221	13493780	+	0	NA	intron (NM_001330636, intron 3 of 6)	MER3|DNA|hAT-Charlie	13194	NM_001136041	79885		NM_024827	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
44757	chr11	112085201	112085400	+	0	NA	TTS (NM_001301019)	TTS (NM_001301019)	1456	NM_012459	26521		NM_012459	ENSG00000150779	TIMM8B	DDP2|TIM8B	translocase of inner mitochondrial membrane 8 homolog B	protein-coding
201197	chr6	143400501	143401130	+	0	NA	Intergenic	Intergenic	41862	NM_001286259	134637		NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase tRNA specific 2	protein-coding
131199	chr2	95037301	95037900	+	0	NA	intron (NM_022440, intron 1 of 1)	(AGTGAGTG)n|Simple_repeat|Simple_repeat	11892	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
98450	chr17	46978051	46978580	+	0	NA	3' UTR (NM_203400, exon 1 of 1)	3' UTR (NM_203400, exon 1 of 1)	938	NM_203400	388394		NM_203400	ENSG00000179673	RPRML	-	reprimo like	protein-coding
196182	chr6	42629521	42630130	+	0	NA	intron (NM_001363705, intron 11 of 46)	intron (NM_001363705, intron 11 of 46)	65796	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
181335	chr5	40403951	40405250	+	0	NA	Intergenic	Intergenic	-275315	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
17231	chr1	156291271	156292130	+	0	NA	promoter-TSS (NM_001323617)	promoter-TSS (NM_001323617)	-202	NM_001323617	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
48282	chr12	8890701	8891480	+	0	NA	Intergenic	MER110A|LTR|ERV1	-23419	NM_004426	1911		NM_004426	ENSG00000111752	PHC1	EDR1|HPH1|MCPH11|RAE28	polyhomeotic homolog 1	protein-coding
144834	chr20	36859501	36859900	+	0	NA	5' UTR (NM_199181, exon 1 of 15)	5' UTR (NM_199181, exon 1 of 15)	173	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
157684	chr22	46296021	46297850	+	0	NA	promoter-TSS (NM_016426)	promoter-TSS (NM_016426)	65	NM_016426	51512		NM_016426	ENSG00000075218	GTSE1	B99	G2 and S-phase expressed 1	protein-coding
163118	chr3	50125171	50125330	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-24262	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
239280	chrY	13752821	13753550	+	0	NA	Intergenic	Intergenic	49286	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
75688	chr15	67832071	67833230	+	0	NA	exon (NM_001365915, exon 7 of 9)	exon (NM_001365915, exon 7 of 9)	6229	NR_120345	101929076		NR_120345	ENSG00000245719	SKOR1-AS1	-	SKOR1 antisense RNA 1	ncRNA
142152	chr20	2804821	2805230	+	0	NA	Intergenic	Intergenic	-4398	NM_001184699	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
155394	chr22	38321121	38321380	+	0	NA	intron (NM_001289912, intron 5 of 14)	L2a|LINE|L2	-3166	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
115314	chr19	14785021	14785500	+	0	NA	Intergenic	Intergenic	-6700	NM_013447	30817		NM_013447	ENSG00000127507	ADGRE2	CD312|CD97|EMR2|VBU	adhesion G protein-coupled receptor E2	protein-coding
131042	chr2	88247571	88247800	+	0	NA	Intergenic	Intergenic	77339	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
99402	chr17	49999221	49999480	+	0	NA	Intergenic	L2b|LINE|L2	-4126	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
216252	chr8	12426901	12427100	+	0	NA	intron (NR_148877, intron 4 of 4).2	intron (NR_148877, intron 4 of 4).2	-8968	NR_073395	389633		NR_036463		FAM90A25P	FAM90A2P	Putative protein FAM90A2P	pseudo
206060	chr7	27160471	27161900	+	0	NA	Intergenic	CpG	4352	NM_152739	3205		NM_002142	ENSG00000078399	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding
116561	chr19	18229001	18229200	+	0	NA	intron (NM_001330172, intron 2 of 15)	AluSq2|SINE|Alu	-2662	NM_001369701	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
233968	chrX	2690421	2691950	+	0	NA	promoter-TSS (NM_001122898)	promoter-TSS (NM_001122898)	-110	NM_001321369	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
23386	chr1	228182151	228183300	+	0	NA	TTS (NM_001010867)	TTS (NM_001010867)	8155	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
34027	chr10	124715321	124716200	+	0	NA	TTS (NR_120630)	TTS (NR_120630)	11732	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
107125	chr18	35094701	35095100	+	0	NA	intron (NR_046177, intron 2 of 6)	intron (NR_046177, intron 2 of 6)	53487	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
47330	chr12	1801951	1802480	+	0	NA	intron (NM_172364, intron 29 of 37)	intron (NM_172364, intron 29 of 37)	-18052	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
149249	chr21	25734311	25736180	+	0	NA	5' UTR (NM_001685, exon 1 of 4)	intron (NM_001197297, intron 1 of 9)	273	NM_001197297	2551		NM_002040	ENSG00000154727	GABPA	E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07	GA binding protein transcription factor subunit alpha	protein-coding
198096	chr6	90285501	90286450	+	0	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	10868	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
68021	chr14	75140771	75141380	+	0	NA	intron (NM_006827, intron 3 of 4)	intron (NM_006827, intron 3 of 4)	-14027	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
175507	chr4	74038421	74039030	+	0	NA	promoter-TSS (NM_002090)	promoter-TSS (NM_002090)	-36	NM_002090	2921		NM_002090	ENSG00000163734	CXCL3	CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3	C-X-C motif chemokine ligand 3	protein-coding
10208	chr1	62271871	62272550	+	0	NA	intron (NM_001320269, intron 2 of 8)	intron (NM_001320269, intron 2 of 8)	47224	NM_181712	163782		NM_181712	ENSG00000132854	KANK4	ANKRD38|dJ1078M7.1	KN motif and ankyrin repeat domains 4	protein-coding
91107	chr17	3667571	3669700	+	0	NA	promoter-TSS (NM_014604)	promoter-TSS (NM_014604)	44	NM_001204698	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
64413	chr14	24178451	24178830	+	0	NA	exon (NM_005132, exon 14 of 20)	exon (NM_005132, exon 14 of 20)	6560	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
53932	chr12	71756651	71756750	+	0	NA	intron (NM_014999, intron 1 of 6)	intron (NM_014999, intron 1 of 6)	1837	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
167401	chr3	128991651	128992330	+	0	NA	promoter-TSS (NM_001348523)	promoter-TSS (NM_001348523)	-93	NM_001348523	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
163220	chr3	50251371	50252430	+	0	NA	intron (NM_001282619, intron 2 of 9)	intron (NM_001282619, intron 2 of 9)	4990	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
130044	chr2	74425571	74426000	+	0	NA	TTS (NM_001320825)	TTS (NM_001320825)	4055	NM_032118	84058		NM_032118	ENSG00000005448	WDR54	-	WD repeat domain 54	protein-coding
97384	chr17	43354601	43355400	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	33898	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
89428	chr16	88938101	88938380	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	-1031	NR_168285	100129697		NM_001290330		LOC100129697	-	uncharacterized LOC100129697	ncRNA
63556	chr14	20345271	20345530	+	0	NA	exon (NM_005484, exon 3 of 16)	exon (NM_005484, exon 3 of 16)	1765	NM_001042618	10038		NM_005484	ENSG00000129484	PARP2	ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2	poly(ADP-ribose) polymerase 2	protein-coding
59068	chr13	20828201	20828880	+	0	NA	intron (NM_001372061, intron 6 of 19)	intron (NM_001372061, intron 6 of 19)	-54579	NM_001318939	221143		NM_174928	ENSG00000150456	EEF1AKMT1	ESP13|N6AMT2|eEF1A-KMT	EEF1A lysine methyltransferase 1	protein-coding
67754	chr14	73716951	73717450	+	0	NA	3' UTR (NM_194278, exon 12 of 12)	3' UTR (NM_194278, exon 12 of 12)	-2816	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
218141	chr8	41766621	41767080	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	30772	NM_000037	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
56629	chr12	118338601	118339000	+	0	NA	intron (NM_001346487, intron 1 of 20)	AluSx4|SINE|Alu	20905	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
128793	chr2	62307701	62308680	+	0	NA	Intergenic	MIRb|SINE|MIR	92669	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
226398	chr9	70408301	70408680	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	6167	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
118991	chr19	38884421	38884680	+	0	NA	intron (NR_034146, intron 6 of 13)	AluSg|SINE|Alu	-6275	NM_001195833	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
179033	chr4	165210021	165210480	+	0	NA	intron (NM_001161522, intron 1 of 13)	L2a|LINE|L2	231	NM_001161522	11275		NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
158911	chr3	9984371	9984980	+	0	NA	intron (NM_018447, intron 2 of 8)	AluY|SINE|Alu	-2218	NR_103821	442075		NM_001013730		EMC3-AS1	-	EMC3 antisense RNA 1	ncRNA
154051	chr22	30595501	30596100	+	0	NA	intron (NM_001282327, intron 2 of 16)	intron (NM_001282327, intron 2 of 16)	-3890	NM_014303	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
78404	chr15	92011921	92012180	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	157746	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
30927	chr10	87216001	87216200	+	0	NA	Intergenic	Intergenic	-9348	NM_001099338	728118		NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
79230	chr16	375901	376350	+	0	NA	intron (NM_021259, intron 6 of 12)	CpG	-5587	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
8648	chr1	41792501	41792700	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	126322	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
100249	chr17	59371251	59371750	+	0	NA	intron (NM_001005404, intron 2 of 4)	intron (NM_001005404, intron 2 of 4)	5417	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
230247	chr9	127886901	127887100	+	0	NA	intron (NM_001287002, intron 5 of 5)	intron (NM_001287002, intron 5 of 5)	-7379	NM_001318121	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
232025	chr9	133374321	133375290	+	0	NA	intron (NM_001280791, intron 1 of 5)	intron (NM_001280791, intron 1 of 5)	1255	NM_033161	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
210371	chr7	99598901	99599550	+	0	NA	intron (NM_001195542, intron 1 of 5)	AluY|SINE|Alu	958	NM_001195541	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
74852	chr15	63525401	63525600	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	20907	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
183761	chr5	81722121	81722600	+	0	NA	intron (NM_001256733, intron 1 of 15)	intron (NM_001256733, intron 1 of 15)	28893	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
230323	chr9	127973071	127974380	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	7264	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
141980	chr20	1363451	1363550	+	0	NA	intron (NR_040047, intron 1 of 2)	intron (NR_040047, intron 1 of 2)	29461	NR_106929	102465524		NR_106929	ENSG00000284436	MIR6869	hsa-mir-6869	microRNA 6869	ncRNA
166166	chr3	111615551	111617180	+	0	NA	intron (NR_134917, intron 8 of 14)	intron (NR_134917, intron 8 of 14)	-21019	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
125810	chr2	24074571	24074730	+	0	NA	intron (NM_016047, intron 1 of 3)	intron (NM_016047, intron 1 of 3)	1676	NM_016047	51639		NM_016047	ENSG00000115128	SF3B6	CGI-110|HSPC175|Ht006|P14|SAP14|SAP14a|SF3B14|SF3B14a	splicing factor 3b subunit 6	protein-coding
48966	chr12	12917151	12917250	+	0	NA	3' UTR (NM_003979, exon 4 of 4)	3' UTR (NM_003979, exon 4 of 4)	1371	NR_030345	693199		NR_030345	ENSG00000283759	MIR614	MIRN614|hsa-mir-614	microRNA 614	ncRNA
7029	chr1	31925001	31925200	+	0	NA	intron (NM_080391, intron 1 of 5)	L1ME4b|LINE|L1	12718	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
22507	chr1	221776721	221776980	+	0	NA	Intergenic	Intergenic	-34674	NR_111940	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
205356	chr7	13532151	13532450	+	0	NA	Intergenic	Intergenic	454214	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
187055	chr5	140042721	140043980	+	0	NA	promoter-TSS (NM_004883)	promoter-TSS (NM_004883)	-51	NM_013982	9542		NM_004883	ENSG00000158458	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
23718	chr1	231918401	231919100	+	0	NA	intron (NM_001164541, intron 9 of 9)	intron (NM_001164541, intron 9 of 9)	-7084	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
128694	chr2	61532901	61533100	+	0	NA	intron (NM_003400, intron 2 of 24)	AluSx|SINE|Alu	5356	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
113838	chr19	10629771	10630130	+	0	NA	intron (NM_001363611, intron 4 of 22)	AluSx1|SINE|Alu	4397	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
11393	chr1	89671201	89671600	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	38280	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
183490	chr5	79271901	79272100	+	0	NA	intron (NM_152405, intron 1 of 10)	AluSx|SINE|Alu	35869	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
8707	chr1	42317021	42317480	+	0	NA	intron (NM_001198851, intron 2 of 14)	intron (NM_001198851, intron 2 of 14)	17705	NM_001198851	22887		NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
151981	chr22	19152171	19152580	+	0	NA	Intergenic	AluJb|SINE|Alu	-2083	NM_005315	2928		NM_005315	ENSG00000063515	GSC2	GSCL	goosecoid homeobox 2	protein-coding
129305	chr2	68607901	68608100	+	0	NA	Intergenic	L1PA16|LINE|L1	-35579	NM_138964	10887		NM_138964	ENSG00000169618	PROKR1	GPR73|GPR73a|PK-R1|PKR1|ZAQ	prokineticin receptor 1	protein-coding
104823	chr17	81813021	81813630	+	0	NA	intron (NM_000160, intron 13 of 13)	intron (NM_000160, intron 13 of 13)	9175	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
160452	chr3	30042351	30042550	+	0	NA	Intergenic	Intergenic	-108294	NR_046556	100873977		NR_046556	ENSG00000235593	RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
236916	chrX	88904221	88904480	+	0	NA	Intergenic	L1PB2|LINE|L1	157125	NM_001184771	53336		NM_033048	ENSG00000147183	CPXCR1	CT77	CPX chromosome region candidate 1	protein-coding
58642	chr12	132512301	132512900	+	0	NA	TTS (NR_168498)	TTS (NR_168498)	7194	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171022	chr3	195106351	195106900	+	0	NA	intron (NM_001308069, intron 3 of 3)	intron (NM_001308069, intron 3 of 3)	12037	NR_104188	100874528		NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
13451	chr1	114489571	114489750	+	0	NA	intron (NM_033020, intron 1 of 18)	AluJo|SINE|Alu	21543	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
4382	chr1	20758351	20759050	+	0	NA	intron (NR_164851, intron 7 of 11)	AluJb|SINE|Alu	-25997	NM_001103161	400745		NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
144050	chr20	33661251	33661550	+	0	NA	promoter-TSS (NM_080825)	promoter-TSS (NM_080825)	-927	NM_080825	128864		NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
85804	chr16	56972401	56972600	+	0	NA	intron (NM_001286085, intron 8 of 14)	MLT1J|LTR|ERVL-MaLR	10550	NM_000078	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
103976	chr17	79998971	79999130	+	0	NA	intron (NM_019020, intron 3 of 11)	AluSx1|SINE|Alu	36822	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
148910	chr21	8987901	8988700	+	0	NA	TTS (NR_162111).2	TTS (NR_162111).2	683	NR_162105	113218501		NR_162105		MIR10396A	-	microRNA 10396a	ncRNA
143560	chr20	31610421	31611180	+	0	NA	Intergenic	Intergenic	3614	NR_036161	100422904		NR_036161	ENSG00000264395	MIR3193	-	microRNA 3193	ncRNA
38348	chr11	44573821	44574080	+	0	NA	intron (NM_002231, intron 1 of 9)	intron (NM_002231, intron 1 of 9)	8287	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
210908	chr7	101200551	101201250	+	0	NA	5' UTR (NM_178176, exon 1 of 7)	5' UTR (NM_178176, exon 1 of 7)	136	NM_001287147	346606		NM_178176	ENSG00000106384	MOGAT3	DC7|DGAT2L2|MGAT3	monoacylglycerol O-acyltransferase 3	protein-coding
169737	chr3	172476821	172477980	+	0	NA	Intergenic	Intergenic	-28944	NM_198407	2693		NM_004122	ENSG00000121853	GHSR	GHDP|GHS-R1a|GHSR-1a	growth hormone secretagogue receptor	protein-coding
171944	chr4	885451	886080	+	0	NA	intron (NM_001318134, intron 8 of 24)	AluJr|SINE|Alu	46551	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
201179	chr6	143039571	143039980	+	0	NA	Intergenic	L1MEg|LINE|L1	-2193	NR_038987	100507489		NR_038987		LINC01277	-	long intergenic non-protein coding RNA 1277	ncRNA
21080	chr1	203315471	203316180	+	0	NA	Intergenic	AluSg|SINE|Alu	10306	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
131177	chr2	94272201	94272500	+	0	NA	Intergenic	Intergenic	-63931	NR_146107	728034		NR_146105		BMS1P23	-	BMS1 pseudogene 23	pseudo
197430	chr6	73650671	73650980	+	0	NA	intron (NM_001382631, intron 1 of 11)	L2a|LINE|L2	3167	NM_001382635	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
84472	chr16	30470451	30471950	+	0	NA	Intergenic	L1MB7|LINE|L1	-1542	NM_002209	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
225834	chr9	37965721	37966180	+	0	NA	intron (NM_003028, intron 3 of 5)	intron (NM_003028, intron 3 of 5)	-61597	NR_024872	92014		NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
226366	chr9	70110771	70111130	+	0	NA	intron (NM_153267, intron 4 of 13)	intron (NM_153267, intron 4 of 13)	64938	NR_040076	100507244		NR_040076	ENSG00000204706	MAMDC2-AS1	-	MAMDC2 antisense RNA 1	ncRNA
57770	chr12	122988471	122988830	+	0	NA	intron (NM_001384662, intron 17 of 23)	intron (NM_001384662, intron 17 of 23)	8590	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
92219	chr17	7866171	7866530	+	0	NA	intron (NM_001330111, intron 3 of 4)	AluY|SINE|Alu	8347	NM_001330110	124637		NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
230029	chr9	127222701	127222900	+	0	NA	3' UTR (NM_001322324, exon 18 of 18)	3' UTR (NM_001322324, exon 18 of 18)	-40862	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
30715	chr10	81710051	81710150	+	0	NA	Intergenic	L1PA2|LINE|L1	-165094	NM_001370082	10718		NM_001010848	ENSG00000185737	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding
100027	chr17	57987301	57988980	+	0	NA	5' UTR (NM_007146, exon 1 of 6)	5' UTR (NM_007146, exon 1 of 6)	114	NM_001330393	7716		NM_007146	ENSG00000136451	VEZF1	CMD1OO|DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
69585	chr14	97212501	97212900	+	0	NA	Intergenic	Intergenic	57843	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
102245	chr17	75259051	75259150	+	0	NA	intron (NM_001291641, intron 1 of 17)	AluY|SINE|Alu	2506	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
72116	chr15	28950021	28950680	+	0	NA	intron (NM_001353793, intron 1 of 12).2	AluY|SINE|Alu	16346	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
209421	chr7	76355251	76356050	+	0	NA	intron (NM_012479, intron 1 of 1)	intron (NM_012479, intron 1 of 1)	3341	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
52786	chr12	56706801	56707350	+	0	NA	Intergenic	AluSq2|SINE|Alu	18224	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
166198	chr3	111851371	111851730	+	0	NA	intron (NM_001134437, intron 2 of 17)	intron (NM_001134437, intron 2 of 17)	-7630	NM_145753	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
98617	chr17	47777601	47777800	+	0	NA	Intergenic	MIRc|SINE|MIR	44094	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
71512	chr14	106115871	106116950	+	0	NA	Intergenic	Intergenic	-144141	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
179339	chr4	182918831	182919550	+	0	NA	Intergenic	Intergenic	-1713	NM_001921	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
30674	chr10	80499851	80500300	+	0	NA	intron (NM_001128309, intron 2 of 5)	intron (NM_001128309, intron 2 of 5)	31834	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
210658	chr7	100488171	100489150	+	0	NA	exon (NM_173564, exon 4 of 7)	exon (NM_173564, exon 4 of 7)	4733	NM_173564	222950		NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
71388	chr14	105513871	105514030	+	0	NA	Intergenic	AluSx3|SINE|Alu	-12633	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
177975	chr4	139082201	139083470	+	0	NA	intron (NM_001371324, intron 5 of 10)	intron (NM_001371324, intron 5 of 10)	1389	NM_001276459	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
143689	chr20	32116471	32116630	+	0	NA	intron (NM_001363731, intron 1 of 17)	intron (NM_001363731, intron 1 of 17)	6822	NM_001363731	9777		NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
49875	chr12	38771921	38772250	+	0	NA	intron (NM_153634, intron 7 of 19)	MSTB2|LTR|ERVL-MaLR	133506	NM_153634	144402		NM_153634	ENSG00000139117	CPNE8	-	copine 8	protein-coding
176260	chr4	86999371	87000150	+	0	NA	intron (NM_001166693, intron 2 of 20)	intron (NM_001166693, intron 2 of 20)	-7228	NM_001313959	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
137621	chr2	197314801	197315480	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-4360	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
62464	chr13	99364621	99364880	+	0	NA	intron (NR_026644, intron 7 of 8)	L1ME3A|LINE|L1	8619	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
117673	chr19	24086771	24087930	+	0	NA	intron (NM_001278678, intron 1 of 1)	intron (NM_001278678, intron 1 of 1)	163	NM_203282	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
1177	chr1	2225601	2225800	+	0	NA	Intergenic	AluSz|SINE|Alu	-2619	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
120772	chr19	45433401	45433600	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluSx|SINE|Alu	-3154	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
34199	chr10	129036601	129037300	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	124117	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
43701	chr11	85968801	85969000	+	0	NA	intron (NM_007166, intron 19 of 19)	intron (NM_007166, intron 19 of 19)	100184	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
153561	chr22	26646371	26647150	+	0	NA	Intergenic	Intergenic	-10722	NR_033321	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
87206	chr16	69441651	69441950	+	0	NA	intron (NM_030579, intron 1 of 4)	intron (NM_030579, intron 1 of 4)	17181	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
548	chr1	1242371	1242530	+	0	NA	TTS (NM_001014980)	TTS (NM_001014980)	4272	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
198068	chr6	90230951	90231700	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	65518	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
149027	chr21	14584951	14585250	+	0	NA	intron (NR_046512, intron 1 of 4)	intron (NR_046512, intron 1 of 4)	-1698	NM_001256370	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
111745	chr19	4363071	4363850	+	0	NA	exon (NM_003025, exon 7 of 10)	exon (NM_003025, exon 7 of 10)	19898	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
86403	chr16	66740871	66741030	+	0	NA	intron (NM_001286157, intron 3 of 11)	MLT1J|LTR|ERVL-MaLR	10659	NM_006141	1783		NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding
38702	chr11	46620951	46621280	+	0	NA	5' UTR (NM_001346319, exon 3 of 20)	5' UTR (NM_001346319, exon 3 of 20)	3562	NM_001346311	9776		NM_014741	ENSG00000175224	ATG13	KIAA0652|PARATARG8	autophagy related 13	protein-coding
180157	chr5	1383721	1384530	+	0	NA	Intergenic	Intergenic	-4052	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
146779	chr20	50913371	50914550	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-4169	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
113467	chr19	9930751	9931880	+	0	NA	intron (NM_058164, intron 1 of 5)	AluJr|SINE|Alu	5200	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
173126	chr4	6595921	6596580	+	0	NA	intron (NM_015274, intron 7 of 18)	intron (NM_015274, intron 7 of 18)	21061	NM_001292038	23324		NM_015274	ENSG00000013288	MAN2B2	EpMAN	mannosidase alpha class 2B member 2	protein-coding
143717	chr20	32276221	32276480	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-1301	NM_004798	9371		NM_004798	ENSG00000101350	KIF3B	FLA8|HH0048|KLP-11|OTSC12|RP89	kinesin family member 3B	protein-coding
214346	chr7	149477271	149477430	+	0	NA	intron (NM_152557, intron 5 of 6)	intron (NM_152557, intron 5 of 6)	-16288	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
130922	chr2	87480601	87481200	+	0	NA	intron (NR_146461, intron 2 of 2)	AluSx3|SINE|Alu	10950	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
175886	chr4	80067121	80067780	+	0	NA	intron (NM_001145794, intron 3 of 15)	MIRb|SINE|MIR	5779	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
39750	chr11	61832551	61832850	+	0	NA	intron (NM_004265, intron 1 of 11)	intron (NM_004265, intron 1 of 11)	4400	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
26684	chr10	22628421	22628850	+	0	NA	intron (NM_005028, intron 1 of 9)	MER4B|LTR|ERV1	85473	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
212526	chr7	128836051	128836550	+	0	NA	intron (NM_001458, intron 2 of 47)	intron (NM_001458, intron 2 of 47)	5894	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
37813	chr11	33019171	33019330	+	0	NA	intron (NM_139160, intron 1 of 8)	MER20|DNA|hAT-Charlie	3068	NM_139160	91614		NM_139160	ENSG00000121690	DEPDC7	TR2|dJ85M6.4	DEP domain containing 7	protein-coding
200224	chr6	131519651	131520480	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-53161	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
117774	chr19	29711521	29712030	+	0	NA	intron (NM_001256047, intron 1 of 2)	intron (NM_001256047, intron 1 of 2)	3281	NM_001282929	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
76826	chr15	77180571	77180730	+	0	NA	exon (NM_001385026, exon 7 of 10)	exon (NM_001385026, exon 7 of 10)	44754	NR_026813	81698		NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	ncRNA
46527	chr11	128457671	128458530	+	0	NA	TTS (NM_001330451)	TTS (NM_001330451)	64210	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
80599	chr16	2924201	2924600	+	0	NA	intron (NM_032296, intron 2 of 9)	intron (NM_032296, intron 2 of 9)	12421	NM_020912	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
61666	chr13	73954871	73955250	+	0	NA	intron (NM_007249, intron 2 of 7)	MIRb|SINE|MIR	178869	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
233947	chrX	2519101	2519500	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-18324	NM_145177	207063		NM_145177	ENSG00000169084	DHRSX	CXorf11|DHRS5X|DHRS5Y|DHRSXY|DHRSY|SDR46C1|SDR7C6	dehydrogenase/reductase X-linked	protein-coding
103949	chr17	79877171	79877330	+	0	NA	Intergenic	L1MD2|LINE|L1	-37810	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
40478	chr11	64237971	64238130	+	0	NA	intron (NM_003377, intron 6 of 6)	intron (NM_003377, intron 6 of 6)	-3045	NM_004470	2286		NM_004470	ENSG00000173486	FKBP2	FKBP-13|FKBP13|PPIase	FKBP prolyl isomerase 2	protein-coding
17557	chr1	156807121	156808200	+	0	NA	intron (NM_001161444, intron 7 of 7)	L2b|LINE|L2	-8090	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
94567	chr17	29622201	29623380	+	0	NA	Intergenic	CpG	-1367	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
186829	chr5	139403431	139405000	+	0	NA	promoter-TSS (NM_194296)	promoter-TSS (NM_194296)	-126	NM_194296	202051		NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
226730	chr9	75855551	75855650	+	0	NA	Intergenic	MIR3|SINE|MIR	-35044	NM_001190482	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
98952	chr17	48641471	48641980	+	0	NA	Intergenic	(CAGGGGCGG)n|Simple_repeat|Simple_repeat	-9166	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
229533	chr9	122834271	122834680	+	0	NA	Intergenic	AluY|SINE|Alu	-5887	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
196205	chr6	42766221	42766880	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	-16946	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
221522	chr8	124651151	124651800	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	76998	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
125204	chr2	10283201	10283400	+	0	NA	Intergenic	Intergenic	-19604	NM_002149	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
115251	chr19	14528871	14530600	+	0	NA	promoter-TSS (NM_001313964)	promoter-TSS (NM_001313964)	141	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
11023	chr1	84862671	84863630	+	0	NA	intron (NM_012152, intron 2 of 2)	AluJb|SINE|Alu	30056	NM_012152	23566		NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
5222	chr1	24988251	24989180	+	0	NA	Intergenic	Intergenic	-23705	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
215562	chr7	158811301	158811750	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	17984	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
190342	chr5	179659501	179660300	+	0	NA	intron (NR_134260, intron 2 of 2)	L1MC5a|LINE|L1	1794	NR_134259	105377763		NR_134259		LOC105377763	-	uncharacterized LOC105377763	ncRNA
99900	chr17	56850871	56851230	+	0	NA	intron (NM_003647, intron 7 of 11)	intron (NM_003647, intron 7 of 11)	16899	NM_003647	8526		NM_003647	ENSG00000153933	DGKE	AHUS7|DAGK5|DAGK6|DGK|NPHS7	diacylglycerol kinase epsilon	protein-coding
100276	chr17	59627001	59627400	+	0	NA	intron (NM_004859, intron 1 of 31)	intron (NM_004859, intron 1 of 31)	7305	NM_004859	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
39270	chr11	57793801	57794030	+	0	NA	intron (NM_001331, intron 3 of 18)	intron (NM_001331, intron 3 of 18)	32113	NM_001331	1500		NM_001331	ENSG00000198561	CTNND1	BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
217726	chr8	30646251	30646350	+	0	NA	TTS (NM_001206847)	TTS (NM_001206847)	7720	NM_001206847	100507341		NM_001206847	ENSG00000253457	SMIM18	-	small integral membrane protein 18	protein-coding
112574	chr19	6633121	6633680	+	0	NA	Intergenic	LTR13|LTR|ERVK	36758	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
88487	chr16	85107071	85107500	+	0	NA	intron (NM_001366920, intron 4 of 7)	intron (NM_001366920, intron 4 of 7)	5187	NM_198491	339145		NM_198491	ENSG00000153789	CIBAR2	FAM92B	CBY1 interacting BAR domain containing 2	protein-coding
101968	chr17	74734451	74734780	+	0	NA	intron (NM_175738, intron 2 of 8)	AluSx1|SINE|Alu	-1945	NM_001330471	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
68391	chr14	80850251	80850350	+	0	NA	intron (NR_157142, intron 9 of 24)	intron (NR_157142, intron 9 of 24)	91438	NR_157142	145508		NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding
10186	chr1	61641301	61641950	+	0	NA	Intergenic	Intergenic	-12617	NR_073400	414927		NR_073400		MGC34796	-	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene	pseudo
225007	chr9	33124751	33125400	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	16383	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
76051	chr15	72305971	72307000	+	0	NA	promoter-TSS (NM_001172685)	promoter-TSS (NM_001172685)	-170	NM_001172685	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
174480	chr4	39873751	39874200	+	0	NA	intron (NM_001100399, intron 20 of 32)	AluJo|SINE|Alu	103936	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
42015	chr11	67414321	67414580	+	0	NA	Intergenic	AluSx|SINE|Alu	-1228	NM_020811	57571		NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
34397	chr10	132382651	132383150	+	0	NA	Intergenic	L1MA4|LINE|L1	-14300	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
198172	chr6	95588151	95588450	+	0	NA	intron (NM_024641, intron 2 of 4)	intron (NM_024641, intron 2 of 4)	10765	NM_024641	79694		NM_024641	ENSG00000172469	MANEA	ENDO|hEndo	mannosidase endo-alpha	protein-coding
70353	chr14	101870801	101871630	+	0	NA	intron (NM_178587, intron 2 of 11)	AluY|SINE|Alu	61352	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
65876	chr14	55099351	55099650	+	0	NA	Intergenic	AluSq2|SINE|Alu	-29752	NM_001357678	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
57250	chr12	121570401	121570630	+	0	NA	intron (NM_001005366, intron 4 of 22)	intron (NM_001005366, intron 4 of 22)	9731	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
203042	chr6	165409551	165409650	+	0	NA	intron (NM_001385079, intron 13 of 21)	5S|rRNA|rRNA	-99995	NM_144980	168090		NM_144980	ENSG00000112539	C6orf118	bA85G2.1|dJ416F21.2	chromosome 6 open reading frame 118	protein-coding
2731	chr1	10663951	10664330	+	0	NA	intron (NM_017766, intron 5 of 15)	intron (NM_017766, intron 5 of 15)	132506	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
64849	chr14	35210601	35210800	+	0	NA	intron (NM_001256678, intron 4 of 6)	intron (NM_001256678, intron 4 of 6)	-67858	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
28956	chr10	63231621	63232030	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	37398	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
156448	chr22	41243171	41244450	+	0	NA	TTS (NM_001317930)	TTS (NM_001317930)	-2879	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
234021	chrX	3711001	3711730	+	0	NA	intron (NM_005044, intron 1 of 8)	intron (NM_005044, intron 1 of 8)	2284	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
52053	chr12	54020401	54020830	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	3727	NM_014620	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
1125	chr1	2131901	2134450	+	0	NA	intron (NM_001033582, intron 1 of 14)	intron (NM_001033582, intron 1 of 14)	28459	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
160920	chr3	36792451	36792730	+	0	NA	Intergenic	Intergenic	29910	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
152055	chr22	19713271	19713580	+	0	NA	Intergenic	Intergenic	-1078	NM_002688	5413		NM_002688	ENSG00000184702	SEPTIN5	CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5|Septin-5	septin 5	protein-coding
84734	chr16	30935001	30935830	+	0	NA	intron (NM_001382781, intron 7 of 10)	L2|LINE|L2	10840	NM_001099784	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
203199	chr6	167705301	167705500	+	0	NA	Intergenic	Intergenic	-21613	NR_117092	441178		NM_001025489	ENSG00000203688	LINC02487	-	long intergenic non-protein coding RNA 2487	ncRNA
133197	chr2	113098021	113098850	+	0	NA	Intergenic	L1PBa1|LINE|L1	-19536	NM_001318914	3557		NM_000577	ENSG00000136689	IL1RN	CRMO2|DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4	interleukin 1 receptor antagonist	protein-coding
150353	chr21	42164201	42164630	+	0	NA	Intergenic	Intergenic	-35274	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
149276	chr21	26840151	26840450	+	0	NA	exon (NM_006988, exon 5 of 9)	exon (NM_006988, exon 5 of 9)	5109	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
75887	chr15	69753851	69754400	+	0	NA	Intergenic	Intergenic	-81109	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
214073	chr7	143398471	143398930	+	0	NA	exon (NM_005232, exon 6 of 18)	exon (NM_005232, exon 6 of 18)	-9113	NR_033897	285965		NR_033897	ENSG00000229153	EPHA1-AS1	-	EPHA1 antisense RNA 1	ncRNA
45586	chr11	118885601	118886200	+	0	NA	intron (NM_001716, intron 1 of 1)	intron (NM_001716, intron 1 of 1)	2008	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
215475	chr7	158334321	158334780	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	198263	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
101996	chr17	74766021	74766650	+	0	NA	intron (NM_004252, intron 3 of 5)	AluSz|SINE|Alu	10010	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
87188	chr16	69385301	69386680	+	0	NA	promoter-TSS (NM_005652)	promoter-TSS (NM_005652)	17	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
133222	chr2	113182871	113183550	+	0	NA	exon (NM_012455, exon 2 of 17)	exon (NM_012455, exon 2 of 17)	9239	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
9661	chr1	52666321	52666780	+	0	NA	intron (NR_135156, intron 4 of 5)	MIR3|SINE|MIR	31797	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
103588	chr17	78708401	78708880	+	0	NA	intron (NM_017456, intron 2 of 12)	intron (NM_017456, intron 2 of 12)	8392	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
126613	chr2	28793671	28793830	+	0	NA	intron (NM_206876, intron 7 of 8)	intron (NM_206876, intron 7 of 8)	-17084	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
13110	chr1	111627051	111627150	+	0	NA	intron (NM_001291896, intron 1 of 7)	L1ME4a|LINE|L1	-6702	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
80825	chr16	3477671	3477830	+	0	NA	intron (NM_001317094, intron 2 of 3)	AluSx|SINE|Alu	7719	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
210877	chr7	101153971	101155500	+	0	NA	intron (NM_001283, intron 1 of 4)	CpG	259	NM_001283	1174		NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A	adaptor related protein complex 1 subunit sigma 1	protein-coding
181470	chr5	42583271	42583450	+	0	NA	intron (NM_001242460, intron 1 of 7)	intron (NM_001242460, intron 1 of 7)	17496	NM_001242460	2690		NM_000163	ENSG00000112964	GHR	GHBP|GHIP	growth hormone receptor	protein-coding
144444	chr20	35503301	35503700	+	0	NA	exon (NM_001318219, exon 28 of 33)	exon (NM_001318219, exon 28 of 33)	26152	NR_026933	140873		NM_080828	ENSG00000125975	C20orf173	dJ477O4.4	chromosome 20 open reading frame 173	protein-coding
203924	chr7	1526921	1527580	+	0	NA	Intergenic	AluJo|SINE|Alu	-3452	NM_002360	7975		NM_002360	ENSG00000198517	MAFK	NFE2U|P18	MAF bZIP transcription factor K	protein-coding
238740	chrX	154313151	154313750	+	0	NA	intron (NM_001145933, intron 6 of 12)	intron (NM_001145933, intron 6 of 12)	8280	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
104241	chr17	80712051	80712850	+	0	NA	intron (NM_020761, intron 4 of 33)	L1MC1|LINE|L1	93182	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
214379	chr7	149741871	149742650	+	0	NA	Intergenic	Intergenic	27249	NM_032534	84626		NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
37449	chr11	18015021	18015280	+	0	NA	Intergenic	LTR78|LTR|ERV1	-2103	NR_104040	26297		NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
150059	chr21	37389171	37389430	+	0	NA	intron (NM_001347723, intron 1 of 10)	AluJo|SINE|Alu	21743	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
146746	chr20	50803671	50803830	+	0	NA	intron (NM_198799, intron 1 of 4)	AluJo|SINE|Alu	8689	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
25976	chr10	11743701	11744200	+	0	NA	intron (NM_024693, intron 1 of 4)	intron (NM_024693, intron 1 of 4)	1568	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
198404	chr6	105900351	105900650	+	0	NA	Intergenic	Intergenic	-185836	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
24949	chr10	1489001	1489200	+	0	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	-37530	NR_033387	642394		NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168	ADARB2 antisense RNA 1	ncRNA
192818	chr6	27018201	27018600	+	0	NA	TTS (NR_026776)	TTS (NR_026776)	1906	NR_026776	100270746		NR_026776		LARRPM	-	LINC00240 antisense RNA regulating promoter methylation	ncRNA
147156	chr20	56418121	56419500	+	0	NA	intron (NM_001164114, intron 1 of 5)	L2a|LINE|L2	6550	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
87881	chr16	78235201	78235400	+	0	NA	intron (NM_016373, intron 5 of 8)	intron (NM_016373, intron 5 of 8)	135646	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19291	chr1	172838051	172838900	+	0	NA	Intergenic	Intergenic	179372	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
68856	chr14	91300521	91301100	+	0	NA	intron (NM_001080414, intron 20 of 29)	intron (NM_001080414, intron 20 of 29)	-46930	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
195715	chr6	39029471	39029650	+	0	NA	intron (NM_001371, intron 91 of 91)	intron (NM_001371, intron 91 of 91)	-19221	NM_002062	2740		NM_002062	ENSG00000112164	GLP1R	GLP-1|GLP-1-R|GLP-1R	glucagon like peptide 1 receptor	protein-coding
130450	chr2	85433271	85433830	+	0	NA	intron (NM_201594, intron 13 of 20)	intron (NM_201594, intron 13 of 20)	14619	NM_201594								
129667	chr2	70279801	70280000	+	0	NA	3' UTR (NM_016297, exon 6 of 6)	3' UTR (NM_016297, exon 6 of 6)	13324	NM_001317167	6637		NM_003096	ENSG00000143977	SNRPG	SMG|Sm-G	small nuclear ribonucleoprotein polypeptide G	protein-coding
213208	chr7	132805921	132806180	+	0	NA	intron (NM_017812, intron 6 of 7)	intron (NM_017812, intron 6 of 7)	47080	NR_134332	100506937		NR_134332	ENSG00000225881	LOC100506937	-	uncharacterized LOC100506937	ncRNA
126714	chr2	30173821	30174400	+	0	NA	Intergenic	AluJb|SINE|Alu	-13324	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
190193	chr5	178208421	178209050	+	0	NA	non-coding (NR_103510, exon 14 of 14)	non-coding (NR_103510, exon 14 of 14)	4202	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
219559	chr8	78525401	78526230	+	0	NA	intron (NM_181839, intron 1 of 2)	intron (NM_181839, intron 1 of 2)	9475	NM_181839	5569		NM_006823	ENSG00000171033	PKIA	PRKACN1	cAMP-dependent protein kinase inhibitor alpha	protein-coding
59994	chr13	32419551	32419650	+	0	NA	intron (NR_148480, intron 1 of 8)	THE1C|LTR|ERVL-MaLR	8530	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
89646	chr16	89341421	89342580	+	0	NA	intron (NR_045839, intron 2 of 9)	CpG	21548	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
73967	chr15	51841721	51841980	+	0	NA	intron (NM_014547, intron 1 of 9)	AluSz|SINE|Alu	12197	NM_014547	29766		NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
236662	chrX	76172701	76173850	+	0	NA	intron (NM_001300888, intron 1 of 4)	AluJb|SINE|Alu	213	NM_016500	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
35202	chr11	808251	808800	+	0	NA	Intergenic	AluJb|SINE|Alu	-1442	NM_001004	6181		NM_001004	ENSG00000177600	RPLP2	D11S2243E|LP2|P2|RPP2	ribosomal protein lateral stalk subunit P2	protein-coding
70634	chr14	102871571	102872380	+	0	NA	intron (NM_001385143, intron 4 of 10)	intron (NM_001385143, intron 4 of 10)	-50688	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
19562	chr1	179105501	179105700	+	0	NA	3' UTR (NM_001136000, exon 13 of 13)	3' UTR (NM_001136000, exon 13 of 13)	23530	NM_022371	64222		NM_022371	ENSG00000186283	TOR3A	ADIR|ADIR2	torsin family 3 member A	protein-coding
67274	chr14	69157421	69157680	+	0	NA	Intergenic	AluSz|SINE|Alu	-4353	NM_001284206	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
95301	chr17	35539051	35539850	+	0	NA	Intergenic	MER34B-int|LTR|ERV1	-1589	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
91309	chr17	4329051	4329350	+	0	NA	intron (NM_003342, intron 1 of 5)	AluSx3|SINE|Alu	37474	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
20049	chr1	185441921	185442180	+	0	NA	Intergenic	Intergenic	-107011	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
4852	chr1	23695701	23696150	+	0	NA	intron (NM_000975, intron 5 of 5)	intron (NM_000975, intron 5 of 5)	4119	NM_000975	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
127469	chr2	42221771	42222130	+	0	NA	intron (NM_019063, intron 1 of 22)	AluJb|SINE|Alu	-51719	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
101640	chr17	68242801	68243080	+	0	NA	intron (NM_001346472, intron 2 of 7)	AluJb|SINE|Alu	-4634	NM_001346474	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
95972	chr17	39154201	39155500	+	0	NA	Intergenic	AluY|SINE|Alu	-3213	NM_020405	57125		NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
87723	chr16	75098151	75099080	+	0	NA	intron (NM_032268, intron 2 of 4)	intron (NM_032268, intron 2 of 4)	18157	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
201146	chr6	142910921	142911380	+	0	NA	intron (NM_006734, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	34026	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
124416	chr19	58450951	58452350	+	0	NA	promoter-TSS (NM_207395)	promoter-TSS (NM_207395)	28	NM_207395	388569		NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
139855	chr2	230537271	230537630	+	0	NA	intron (NM_001080391, intron 24 of 28)	LTR84a|LTR|ERVL	120694	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
24819	chr10	283851	284500	+	0	NA	intron (NM_014974, intron 34 of 36)	L2a|LINE|L2	104181	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
6734	chr1	30686721	30687180	+	0	NA	Intergenic	Intergenic	-31822	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
23669	chr1	231335001	231335200	+	0	NA	3' UTR (NM_175876, exon 1 of 1)	3' UTR (NM_175876, exon 1 of 1)	2752	NM_175876	149371		NM_175876	ENSG00000116903	EXOC8	EXO84|Exo84p|NEDMISB|SEC84	exocyst complex component 8	protein-coding
199104	chr6	111677651	111678100	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	-71601	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
76763	chr15	76986771	76987450	+	0	NA	Intergenic	Intergenic	-7570	NM_001321137	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
122406	chr19	49439671	49440380	+	0	NA	intron (NM_020309, intron 1 of 11)	intron (NM_020309, intron 1 of 11)	1502	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
133008	chr2	111626751	111626850	+	0	NA	Intergenic	L1MDa|LINE|L1	-131639	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
106900	chr18	25164901	25165300	+	0	NA	intron (NM_015461, intron 5 of 7)	intron (NM_015461, intron 5 of 7)	-177121	NR_146903	105372030		NR_146903	ENSG00000264345	LINC01894	-	long intergenic non-protein coding RNA 1894	ncRNA
135732	chr2	169462921	169463380	+	0	NA	Intergenic	Intergenic	-16344	NM_152384	129880		NM_152384	ENSG00000163093	BBS5	-	Bardet-Biedl syndrome 5	protein-coding
153636	chr22	28771351	28771880	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1059	NM_001284263	150275		NM_173510	ENSG00000159873	CCDC117	dJ366L4.1	coiled-coil domain containing 117	protein-coding
200462	chr6	135118451	135118750	+	0	NA	Intergenic	Intergenic	-62708	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
104374	chr17	81022051	81022150	+	0	NA	Intergenic	AluSx1|SINE|Alu	12619	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
217482	chr8	28950251	28950650	+	0	NA	intron (NM_001324393, intron 2 of 11)	intron (NM_001324393, intron 2 of 11)	59136	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
7916	chr1	37483571	37484400	+	0	NA	3' UTR (NM_025079, exon 6 of 6)	3' UTR (NM_025079, exon 6 of 6)	3755	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
113929	chr19	10722201	10722400	+	0	NA	intron (NM_001005362, intron 1 of 19)	MER102c|DNA|hAT-Charlie	3896	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
70135	chr14	100275351	100275850	+	0	NA	intron (NM_003403, intron 3 of 4)	L1MA6|LINE|L1	-1757	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
225198	chr9	34068721	34069180	+	0	NA	Intergenic	AluJb|SINE|Alu	-19751	NM_001370059	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
170436	chr3	185901771	185901930	+	0	NA	Intergenic	AluSq2|SINE|Alu	36164	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
230874	chr9	129180171	129180630	+	0	NA	Intergenic	AluY|SINE|Alu	-2139	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
52761	chr12	56665171	56665800	+	0	NA	intron (NM_001282605, intron 4 of 5)	AluSg4|SINE|Alu	-19501	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
35862	chr11	2379001	2379600	+	0	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-1308	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
207746	chr7	48098771	48099150	+	0	NA	intron (NM_001287429, intron 3 of 5)	MER58A|DNA|hAT-Charlie	9695	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
28571	chr10	50739271	50740450	+	0	NA	promoter-TSS (NM_001079516)	promoter-TSS (NM_001079516)	-76	NM_001321957	653308		NM_001079516	ENSG00000204147	ASAH2B	ASAH2C|ASAH2L|bA449O16.3|bA98I6.3	N-acylsphingosine amidohydrolase 2B	protein-coding
140554	chr2	233269571	233269800	+	0	NA	intron (NM_001190266, intron 5 of 17).2	intron (NM_001190266, intron 5 of 17).2	-6041	NR_003008	677775		NR_003008	ENSG00000252010	SCARNA5	U87	small Cajal body-specific RNA 5	ncRNA
106650	chr18	22934651	22934750	+	0	NA	intron (NM_203292, intron 1 of 17)	L1PA5|LINE|L1	824	NM_203291	5932		NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JAWAD|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding
6506	chr1	28514171	28514700	+	0	NA	intron (NM_001048199, intron 3 of 11)	AluY|SINE|Alu	-3791	NM_001048195	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
229281	chr9	120709801	120710730	+	0	NA	intron (NM_001080497, intron 1 of 5)	AluSp|SINE|Alu	4205	NM_001080497	1955		NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
165366	chr3	93138651	93138750	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	835196	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
166834	chr3	122941351	122942000	+	0	NA	intron (NM_001031702, intron 4 of 22)	intron (NM_001031702, intron 4 of 22)	34459	NM_001256347	54437		NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
206156	chr7	27952621	27953500	+	0	NA	intron (NM_175061, intron 2 of 4)	intron (NM_175061, intron 2 of 4)	212965	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
86909	chr16	68069501	68070500	+	0	NA	intron (NM_001271763, intron 8 of 14)	intron (NM_001271763, intron 8 of 14)	-15370	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
32736	chr10	104305601	104306230	+	0	NA	TTS (NM_001191014)	TTS (NM_001191014)	-17449	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
58857	chr12	133035751	133036050	+	0	NA	intron (NR_110091, intron 1 of 2)	LTR45C|LTR|ERV1	1322	NR_110091	101928597		NR_110091	ENSG00000246394	ZNF84-DT	-	ZNF84 divergent transcript	ncRNA
220484	chr8	100489101	100489680	+	0	NA	Intergenic	L1MC2|LINE|L1	70369	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
61681	chr13	74024771	74025900	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	108594	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
213022	chr7	131026221	131026680	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	80580	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
200575	chr6	136289601	136291600	+	0	NA	promoter-TSS (NM_001077440)	promoter-TSS (NM_001077440)	-749	NM_001077440	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
13770	chr1	117068671	117068830	+	0	NA	intron (NM_003594, intron 3 of 22)	intron (NM_003594, intron 3 of 22)	8424	NM_003594	8458		NM_003594	ENSG00000116830	TTF2	F2|HuF2|ZGRF6	transcription termination factor 2	protein-coding
1043	chr1	1883451	1884180	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	7272	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
65689	chr14	52731651	52731750	+	0	NA	intron (NM_001130701, intron 2 of 11)	AluSc|SINE|Alu	1534	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
132320	chr2	105339171	105339330	+	0	NA	intron (NM_024093, intron 1 of 3)	intron (NM_024093, intron 1 of 3)	1710	NM_001286537	79074		NM_024093	ENSG00000135974	C2orf49	asw	chromosome 2 open reading frame 49	protein-coding
125948	chr2	25208201	25208400	+	0	NA	intron (NR_132378, intron 1 of 1)	AluJb|SINE|Alu	3987	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
19490	chr1	175029451	175030090	+	0	NA	Intergenic	Intergenic	-6315	NR_037606	63931		NM_022100	ENSG00000120333	MRPS14	COXPD38|DJ262D12.2|HSMRPS14|MRP-S14|S14mt|uS14m	mitochondrial ribosomal protein S14	protein-coding
139961	chr2	230871351	230872150	+	0	NA	intron (NM_001012514, intron 1 of 4)	intron (NM_001012514, intron 1 of 4)	6800	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
99673	chr17	50731571	50732830	+	0	NA	intron (NM_001330330, intron 1 of 10)	LTR47A|LTR|ERVL	12597	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
194808	chr6	34242351	34242450	+	0	NA	intron (NM_001319080, intron 3 of 5)	MIRb|SINE|MIR	1727	NR_106893	102465502		NR_106893	ENSG00000276404	MIR6835	hsa-mir-6835	microRNA 6835	ncRNA
12584	chr1	108955351	108955450	+	0	NA	intron (NM_001377462, intron 1 of 11)	MLT1G3|LTR|ERVL-MaLR	-4952	NM_001278203	23155		NM_015127	ENSG00000121940	CLCC1	MCLC|RP32	chloride channel CLIC like 1	protein-coding
170897	chr3	193780951	193781050	+	0	NA	Intergenic	Intergenic	63009	NR_146718	105374285		NR_146718		LINC02038	-	long intergenic non-protein coding RNA 2038	ncRNA
219712	chr8	81001401	81002050	+	0	NA	intron (NM_018440, intron 3 of 8)	MIRb|SINE|MIR	110343	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
27193	chr10	28564921	28565530	+	0	NA	intron (NM_100486, intron 3 of 12)	L1MD2|LINE|L1	32107	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
74647	chr15	60860171	60860730	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	178881	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
174399	chr4	39246851	39246950	+	0	NA	intron (NM_001317924, intron 23 of 35)	L1PA4|LINE|L1	64371	NM_025132	57728		NM_025132	ENSG00000157796	WDR19	ATD5|CED4|CFAP66|DYF-2|FAP66|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SPGF72|SRTD5	WD repeat domain 19	protein-coding
229000	chr9	113582901	113583730	+	0	NA	intron (NM_001351526, intron 3 of 8)	intron (NM_001351526, intron 3 of 8)	2387	NM_001282922	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
141756	chr2	241928951	241929250	+	0	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	-26515	NM_001382369	285095		NM_001382368	ENSG00000216921	FAM240C	-	family with sequence similarity 240 member C	protein-coding
109554	chr19	881621	881880	+	0	NA	intron (NM_005481, intron 6 of 15)	intron (NM_005481, intron 6 of 15)	11437	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
19465	chr1	174963251	174963730	+	0	NA	intron (NM_001366451, intron 7 of 12)	intron (NM_001366451, intron 7 of 12)	-1288	NM_001243764	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
2308	chr1	9015571	9015730	+	0	NA	intron (NM_207420, intron 5 of 11)	intron (NM_207420, intron 5 of 11)	10695	NM_207420	155184		NM_207420	ENSG00000197241	SLC2A7	GLUT-7|GLUT7|hGLUT7	solute carrier family 2 member 7	protein-coding
164797	chr3	69370271	69370930	+	0	NA	intron (NM_015123, intron 1 of 22)	intron (NM_015123, intron 1 of 22)	15488	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
148848	chr21	8412701	8414200	+	0	NA	Intergenic	MER39B|LTR|ERV1	16524	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
134540	chr2	143720851	143721150	+	0	NA	intron (NM_018460, intron 13 of 13)	AluY|SINE|Alu	-216067	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
14894	chr1	147032471	147032630	+	0	NA	intron (NR_024442, intron 1 of 5)	intron (NR_024442, intron 1 of 5)	10489	NR_024442	728989		NR_024442		LOC728989	-	phosphodiesterase 4D interacting protein pseudogene	pseudo
92159	chr17	7684651	7685080	+	0	NA	intron (NM_000546, intron 1 of 10)	L1ME2|LINE|L1	-1206	NM_001143990	55135		NM_018081	ENSG00000141499	WRAP53	DKCB3|TCAB1|WDR79	WD repeat containing antisense to TP53	protein-coding
88764	chr16	86761171	86761350	+	0	NA	Intergenic	Intergenic	39169	NR_135183	102724344		NR_135182	ENSG00000261175	LINC02188	-	long intergenic non-protein coding RNA 2188	ncRNA
158905	chr3	9949851	9950350	+	0	NA	non-coding (NR_134900, exon 2 of 5)	non-coding (NR_134900, exon 2 of 5)	2308	NM_207351	285368		NM_207351	ENSG00000163704	PRRT3	-	proline rich transmembrane protein 3	protein-coding
132577	chr2	106506001	106507050	+	0	NA	intron (NM_001368307, intron 5 of 5)	intron (NM_001368307, intron 5 of 5)	19161	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
202579	chr6	158689771	158690300	+	0	NA	intron (NM_001318745, intron 3 of 14)	intron (NM_001318745, intron 3 of 14)	26632	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
33982	chr10	124663951	124664450	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-39828	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
41820	chr11	67026801	67027400	+	0	NA	intron (NM_177963, intron 1 of 7)	MIRb|SINE|MIR	3966	NM_177963	91683		NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
223641	chr8	144341021	144341400	+	0	NA	Intergenic	AluY|SINE|Alu	-4728	NM_031309	83482		NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding
72256	chr15	30572121	30572500	+	0	NA	promoter-TSS (NR_145478).2	promoter-TSS (NR_145478).2	-245	NR_027470	100288380		NR_027470	ENSG00000290723	ULK4P2	D-X|FAM7A2	ULK4 pseudogene 2	pseudo
169785	chr3	172750001	172751630	+	0	NA	promoter-TSS (NM_001349102)	promoter-TSS (NM_001349102)	89	NM_018098	1894		NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
151458	chr21	46183301	46183860	+	0	NA	5' UTR (NM_001142854, exon 2 of 5)	5' UTR (NM_001142854, exon 2 of 5)	879	NM_001142854	84221		NM_032261	ENSG00000160284	SPATC1L	C21orf56	spermatogenesis and centriole associated 1 like	protein-coding
158655	chr3	5017921	5018380	+	0	NA	Intergenic	Intergenic	-38189	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
134273	chr2	135744371	135745750	+	0	NA	intron (NM_014607, intron 1 of 12)	L2c|LINE|L2	-2416	NR_163478	107985946		NM_001365239		LOC107985946	-	uncharacterized LOC107985946	ncRNA
55877	chr12	109572021	109572280	+	0	NA	intron (NM_052845, intron 1 of 8)	MIRb|SINE|MIR	1354	NR_038118	326625		NM_052845	ENSG00000139428	MMAB	ATR|CFAP23|cblB|cob	metabolism of cobalamin associated B	protein-coding
129311	chr2	68709451	68709780	+	0	NA	Intergenic	Intergenic	-25196	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
48792	chr12	11812601	11813230	+	0	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	163241	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
101892	chr17	74361271	74361900	+	0	NA	intron (NM_001080466, intron 1 of 2)	intron (NM_001080466, intron 1 of 2)	283	NM_001080466	388419		NM_001080466	ENSG00000204347	BTBD17	BTBD17A|LGALS3BPL|TANGO10A	BTB domain containing 17	protein-coding
177318	chr4	109700451	109701100	+	0	NA	intron (NM_001226, intron 1 of 6)	intron (NM_001226, intron 1 of 6)	2670	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
60019	chr13	32536021	32536480	+	0	NA	exon (NM_014887, exon 2 of 6)	exon (NM_014887, exon 2 of 6)	2545	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
175495	chr4	73255621	73256280	+	0	NA	intron (NM_032217, intron 1 of 33)	AluSq2|SINE|Alu	2848	NM_015574	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
174093	chr4	30721871	30722030	+	0	NA	exon (NM_002589, exon 1 of 2)	exon (NM_002589, exon 1 of 2)	1581	NM_032457	5099		NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
67122	chr14	68507751	68508330	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	120747	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
199565	chr6	118893041	118894300	+	0	NA	promoter-TSS (NM_014034)	promoter-TSS (NM_014034)	-482	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
213944	chr7	142697401	142697600	+	0	NA	intron (NM_001130026, intron 10 of 10)	MLT1A1|LTR|ERVL-MaLR	31201	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
57451	chr12	121913371	121913530	+	0	NA	intron (NR_048555, intron 3 of 4)	L1M3|LINE|L1	-5142	NM_144668	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
114221	chr19	11460121	11460530	+	0	NA	intron (NM_001420, intron 3 of 6)	L2a|LINE|L2	20721	NM_032281	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
33791	chr10	123139951	123140700	+	0	NA	TTS (NM_001105574)	TTS (NM_001105574)	4355	NM_001105574	340784		NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
44109	chr11	96013351	96014700	+	0	NA	intron (NM_032427, intron 2 of 4)	LTR1A2|LTR|ERV1	-89918	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
25551	chr10	7480621	7481350	+	0	NA	Intergenic	Intergenic	-69499	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
21559	chr1	206289321	206289780	+	0	NA	intron (NM_001377446, intron 2 of 21)	AluY|SINE|Alu	-83777	NM_001385243	729533		NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
125589	chr2	16664001	16664880	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	1394	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
28620	chr10	58334721	58335950	+	0	NA	intron (NM_003338, intron 1 of 6)	CpG	329	NM_003338	7321		NM_003338	ENSG00000072401	UBE2D1	E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A	ubiquitin conjugating enzyme E2 D1	protein-coding
113194	chr19	8418001	8418380	+	0	NA	promoter-TSS (NM_001369779)	promoter-TSS (NM_001369779)	-162	NM_001369779	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
167688	chr3	130178821	130180070	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-33375	NR_027898	646300		NR_027898		COL6A4P2	COL6A4	collagen type VI alpha 4 pseudogene 2	pseudo
153114	chr22	23692721	23693100	+	0	NA	exon (NM_001329424, exon 3 of 12)	exon (NM_001329424, exon 3 of 12)	2049	NM_153615	266747		NM_153615	ENSG00000159496	RGL4	Rgr	ral guanine nucleotide dissociation stimulator like 4	protein-coding
180012	chr5	1008371	1009800	+	0	NA	intron (NM_001271082, intron 1 of 10).2	CpG	123	NM_001271082	85409		NM_033120	ENSG00000145506	NKD2	Naked2	NKD inhibitor of WNT signaling pathway 2	protein-coding
39471	chr11	60988771	60989000	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	17205	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
167415	chr3	129011721	129011980	+	0	NA	intron (NM_001377501, intron 3 of 3)	intron (NM_001377501, intron 3 of 3)	-7848	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
211126	chr7	102530571	102531300	+	0	NA	Intergenic	Intergenic	-13158	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
17932	chr1	160293271	160293700	+	0	NA	intron (NM_001098398, intron 25 of 32)	intron (NM_001098398, intron 25 of 32)	-8334	NR_036492	5824		NM_002857	ENSG00000162735	PEX19	D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1	peroxisomal biogenesis factor 19	protein-coding
48981	chr12	13067271	13067430	+	0	NA	intron (NM_020853, intron 7 of 12)	intron (NM_020853, intron 7 of 12)	22969	NM_020853	57613		NM_020853	ENSG00000084444	FAM234B	KIAA1467	family with sequence similarity 234 member B	protein-coding
16607	chr1	155068151	155068250	+	0	NA	intron (NM_182689, intron 3 of 3)	AluJr|SINE|Alu	-4209	NR_040773	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
125660	chr2	20053171	20053330	+	0	NA	Intergenic	MIR|SINE|MIR	-1622	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
64919	chr14	35421421	35421680	+	0	NA	Intergenic	Intergenic	-16801	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
111620	chr19	4117471	4117630	+	0	NA	exon (NM_030662, exon 2 of 11)	exon (NM_030662, exon 2 of 11)	6572	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
199472	chr6	118557551	118557650	+	0	NA	intron (NM_002667, intron 1 of 1)	MER6|DNA|TcMar-Tigger	9304	NM_002667	5350		NM_002667	ENSG00000198523	PLN	CMD1P|CMH18|PLB	phospholamban	protein-coding
80747	chr16	3148321	3148780	+	0	NA	intron (NR_132322, intron 8 of 9)	intron (NR_132322, intron 8 of 9)	4259	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
225166	chr9	33836301	33836700	+	0	NA	intron (NM_017811, intron 1 of 4)	AluSz6|SINE|Alu	19340	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
23003	chr1	226125171	226126580	+	0	NA	Intergenic	Intergenic	-22128	NR_146443	107985353		NR_146443	ENSG00000234478	ACBD3-AS1	-	ACBD3 antisense RNA 1	ncRNA
152423	chr22	20579171	20579330	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	71203	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
235051	chrX	40108651	40109930	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG-29594	-11332	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
165398	chr3	97641621	97641880	+	0	NA	intron (NM_001080448, intron 14 of 17)	L1PA2|LINE|L1	-122771	NM_032146	84100		NM_032146	ENSG00000113966	ARL6	BBS3|RP55	ADP ribosylation factor like GTPase 6	protein-coding
71632	chr14	106736821	106737580	+	0	NA	Intergenic	Intergenic	113799	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
98537	chr17	47656351	47656880	+	0	NA	intron (NM_002265, intron 3 of 21)	AluJb|SINE|Alu	5550	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
63748	chr14	21233571	21234200	+	0	NA	intron (NM_001077443, intron 2 of 7)	intron (NM_001077443, intron 2 of 7)	-26985	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
71415	chr14	105562801	105563000	+	0	NA	Intergenic	Intergenic	31045	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
43659	chr11	85738701	85739250	+	0	NA	intron (NM_032943, intron 4 of 18)	intron (NM_032943, intron 4 of 18)	19094	NM_001162951	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
51667	chr12	53060371	53060530	+	0	NA	exon (NM_015319, exon 19 of 29)	exon (NM_015319, exon 19 of 29)	3506	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
116755	chr19	18482871	18483230	+	0	NA	intron (NM_006532, intron 1 of 11)	AluJo|SINE|Alu	39020	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
192668	chr6	26216201	26218380	+	0	NA	promoter-TSS (NM_003518)	promoter-TSS (NM_003518)	369	NM_021052	3012		NM_021052	ENSG00000277075	H2AC8	H2A.1|H2A.2|H2A/a|H2AC4|H2AFA|HIST1H2AE	H2A clustered histone 8	protein-coding
93014	chr17	17215821	17216280	+	0	NA	intron (NM_144997, intron 11 of 13)	intron (NM_144997, intron 11 of 13)	-9717	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
87866	chr16	77223251	77223550	+	0	NA	Intergenic	LTR41|LTR|ERVL	23992	NM_001129979	100130958		NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
195701	chr6	38701621	38701880	+	0	NA	intron (NM_006708, intron 1 of 5)	intron (NM_006708, intron 1 of 5)	1395	NM_006708	2739		NM_006708	ENSG00000124767	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
69482	chr14	95465701	95465900	+	0	NA	intron (NM_001384284, intron 4 of 8)	(GATG)n|Simple_repeat|Simple_repeat	34740	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
31225	chr10	91798151	91799600	+	0	NA	promoter-TSS (NR_108070)	promoter-TSS (NR_108070)	449	NM_025235	80351		NM_025235	ENSG00000107854	TNKS2	ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6	tankyrase 2	protein-coding
117145	chr19	19316101	19316300	+	0	NA	intron (NM_172231, intron 2 of 13)	intron (NM_172231, intron 2 of 13)	4309	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
84575	chr16	30628351	30629400	+	0	NA	Intergenic	Intergenic	-18100	NR_073481	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
126863	chr2	31969551	31969750	+	0	NA	intron (NR_163995, intron 1 of 7)	AluJr|SINE|Alu	41114	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
222122	chr8	131919371	131919730	+	0	NA	intron (NM_001323557, intron 1 of 22)	AluY|SINE|Alu	2777	NM_001323557	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
26185	chr10	14539751	14540450	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	-1558	NM_001320740	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
208121	chr7	59305551	59305650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1855423	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
44307	chr11	102353271	102353630	+	0	NA	intron (NM_001256166, intron 3 of 8)	AluSz|SINE|Alu	6076	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
127927	chr2	46439351	46440500	+	0	NA	intron (NR_103805, intron 1 of 3)	intron (NR_103805, intron 1 of 3)	10735	NR_103805	101805491		NR_103805	ENSG00000187600	LINC02583	-	long intergenic non-protein coding RNA 2583	ncRNA
176703	chr4	101039201	101039700	+	0	NA	intron (NM_001130692, intron 10 of 11)	intron (NM_001130692, intron 10 of 11)	201422	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
111174	chr19	3361011	3362750	+	0	NA	intron (NM_205843, intron 1 of 10)	intron (NM_205843, intron 1 of 10)	2250	NM_205843	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
179500	chr4	184645671	184646900	+	0	NA	intron (NM_001354783, intron 2 of 7)	intron (NM_001354783, intron 2 of 7)	3162	NM_004346	836		NM_004346	ENSG00000164305	CASP3	CPP32|CPP32B|SCA-1	caspase 3	protein-coding
86136	chr16	57687651	57687850	+	0	NA	intron (NM_170776, intron 11 of 11)	L1MEi|LINE|L1	-7056	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
24443	chr1	243732171	243732330	+	0	NA	intron (NM_005465, intron 2 of 13)	MER89|LTR|ERV1	111032	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
63971	chr14	22168271	22168780	+	0	NA	Intergenic	Intergenic	264228	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
176954	chr4	103079121	103079680	+	0	NA	3' UTR (NM_020139, exon 10 of 10)	3' UTR (NM_020139, exon 10 of 10)	-2081	NM_001370207	133308		NM_178833	ENSG00000164038	SLC9B2	NHA2|NHE10|NHEDC2	solute carrier family 9 member B2	protein-coding
72776	chr15	39918051	39918600	+	0	NA	intron (NM_001271854, intron 1 of 3)	intron (NM_001271854, intron 1 of 3)	1941	NM_001271854	11245		NM_007223	ENSG00000166073	GPR176	HB-954	G protein-coupled receptor 176	protein-coding
194977	chr6	35345201	35346230	+	0	NA	intron (NM_006238, intron 1 of 7)	intron (NM_006238, intron 1 of 7)	3157	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
183389	chr5	77645221	77646280	+	0	NA	Intergenic	CpG	-7037	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
5685	chr1	26357121	26357730	+	0	NA	Intergenic	Intergenic	-3295	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
110229	chr19	1764151	1765030	+	0	NA	intron (NM_001080488, intron 1 of 1)	intron (NM_001080488, intron 1 of 1)	11084	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
137777	chr2	199463301	199464150	+	0	NA	intron (NM_015265, intron 1 of 11)	CpG	1383	NM_001172517	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
37943	chr11	34355671	34355830	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	2260	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
207779	chr7	50207951	50208680	+	0	NA	Intergenic	Intergenic	-95749	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
236812	chrX	79165651	79166880	+	0	NA	intron (NM_032553, intron 2 of 2)	intron (NM_032553, intron 2 of 2)	21577	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
63302	chr13	113989771	113989930	+	0	NA	intron (NM_001320822, intron 22 of 23).2	intron (NM_001320822, intron 22 of 23).2	-15774	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
103872	chr17	79773971	79774130	+	0	NA	Intergenic	Intergenic	-4098	NM_005189	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
57110	chr12	121092421	121093750	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-39791	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
30175	chr10	74217051	74217500	+	0	NA	intron (NM_001202449, intron 2 of 9)	L1PA3|LINE|L1	40512	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
77780	chr15	86232101	86232330	+	0	NA	intron (NM_152336, intron 6 of 24)	intron (NM_152336, intron 6 of 24)	84753	NR_046012	727915		NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
133464	chr2	119769071	119769430	+	0	NA	intron (NM_002830, intron 1 of 26)	intron (NM_002830, intron 1 of 26)	9328	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
176604	chr4	99025051	99025150	+	0	NA	intron (NM_015143, intron 1 of 10)	MER1B|DNA|hAT-Charlie	27713	NR_037455	100500867		NR_037455	ENSG00000265213	MIR3684	-	microRNA 3684	ncRNA
18683	chr1	167277071	167277230	+	0	NA	intron (NM_001365848, intron 2 of 17)	L2-3_Crp|LINE|L2	-51920	NM_001198783	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
186938	chr5	139642301	139642600	+	0	NA	Intergenic	Intergenic	-4849	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
217995	chr8	38389701	38390130	+	0	NA	intron (NM_144652, intron 2 of 9)	AluSc|SINE|Alu	2784	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
199	chr1	694921	695530	+	0	NA	Intergenic	Intergenic	-8571	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
62787	chr13	108915821	108916150	+	0	NA	intron (NM_015011, intron 16 of 34)	intron (NM_015011, intron 16 of 34)	251318	NR_047700	100885782		NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
1111	chr1	2053351	2053450	+	0	NA	intron (NM_002744, intron 1 of 17)	intron (NM_002744, intron 1 of 17)	2989	NM_002744	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
158532	chr3	3190901	3191100	+	0	NA	Intergenic	Intergenic	-11283	NM_001173482	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
51378	chr12	51851101	51851300	+	0	NA	intron (NR_135803, intron 2 of 2)	intron (NR_135803, intron 2 of 2)	-2482	NM_001384995	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
114843	chr19	13835601	13835900	+	0	NA	TTS (NR_029501)	TTS (NR_029501)	609	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
92357	chr17	8189021	8190930	+	0	NA	exon (NM_017622, exon 1 of 1)	exon (NM_017622, exon 1 of 1)	205	NM_017622	54785		NM_017622	ENSG00000196544	BORCS6	C17orf59|PRO2472	BLOC-1 related complex subunit 6	protein-coding
93837	chr17	20987601	20987800	+	0	NA	Intergenic	Intergenic	49134	NR_160722	339260		NR_123730	ENSG00000233098	LOC339260	-	uncharacterized LOC339260	ncRNA
129817	chr2	72142871	72143580	+	0	NA	intron (NM_001277742, intron 1 of 4)	CpG	4637	NM_001277742	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
167293	chr3	128653121	128654800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3142	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
70514	chr14	102306471	102307550	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1846	NR_148555	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
238625	chrX	153955271	153955430	+	0	NA	exon (NM_005334, exon 17 of 26)	exon (NM_005334, exon 17 of 26)	-10707	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
231428	chr9	131236251	131236780	+	0	NA	Intergenic	Intergenic	39995	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
31672	chr10	97430121	97430630	+	0	NA	intron (NM_001317079, intron 1 of 3)	intron (NM_001317079, intron 1 of 3)	2698	NM_001317079	5223		NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
170391	chr3	184814321	184814580	+	0	NA	intron (NR_146115, intron 2 of 2)	Tigger3b|DNA|TcMar-Tigger	1943	NR_146115	23355		NM_015303	ENSG00000156931	VPS8	KIAA0804	VPS8 subunit of CORVET complex	protein-coding
23178	chr1	226823871	226824030	+	0	NA	Intergenic	AluSc8|SINE|Alu	-46622	NM_012486	5664		NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2	protein-coding
219441	chr8	72257951	72258050	+	0	NA	Intergenic	L1PA10|LINE|L1	-6366	NR_033867	392232		NR_033867		LOC392232	-	transient receptor potential cation channel subfamily A member 1 pseudogene	pseudo
195639	chr6	37860301	37860680	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	40763	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
183083	chr5	73796371	73796730	+	0	NA	intron (NM_001177693, intron 9 of 35)	intron (NM_001177693, intron 9 of 35)	-16996	NM_001244364	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
13250	chr1	112706351	112706450	+	0	NA	intron (NM_175744, intron 1 of 5)	(TC)n|Simple_repeat|Simple_repeat	656	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
112225	chr19	5708051	5708700	+	0	NA	exon (NM_004793, exon 5 of 18)	exon (NM_004793, exon 5 of 18)	11771	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
110047	chr19	1473371	1474430	+	0	NA	TTS (NM_001351273)	TTS (NM_001351273)	5315	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
45292	chr11	118058401	118058630	+	0	NA	intron (NM_001354434, intron 2 of 5)	intron (NM_001354434, intron 2 of 5)	-18497	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
188732	chr5	157477001	157477400	+	0	NA	TTS (NM_033274)	TTS (NM_033274)	16987	NM_001099287	348938		NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN|NIPA4|SLC57A6	NIPA like domain containing 4	protein-coding
227242	chr9	89315371	89315530	+	0	NA	intron (NM_001827, intron 2 of 2)	intron (NM_001827, intron 2 of 2)	-3050	NM_001354698	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
23871	chr1	234840821	234841280	+	0	NA	Intergenic	Intergenic	-80994	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
79431	chr16	703551	703850	+	0	NA	intron (NM_153350, intron 1 of 5)	intron (NM_153350, intron 1 of 5)	2101	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
122094	chr19	48747971	48748600	+	0	NA	3' UTR (NM_000148, exon 4 of 4)	3' UTR (NM_000148, exon 4 of 4)	-1376	NM_182575	284359		NM_182575	ENSG00000182264	IZUMO1	IZUMO|OBF	izumo sperm-oocyte fusion 1	protein-coding
165730	chr3	105365221	105365600	+	0	NA	Intergenic	Intergenic	-1303	NM_001243283	214		NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
78698	chr15	97226251	97226350	+	0	NA	Intergenic	L1M4a1|LINE|L1	295511	NR_120324	101927286		NR_120324	ENSG00000259664	LINC02254	-	long intergenic non-protein coding RNA 2254	ncRNA
85264	chr16	48539051	48539380	+	0	NA	3' UTR (NM_153029, exon 7 of 7)	3' UTR (NM_153029, exon 7 of 7)	70965	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
29705	chr10	72067821	72068080	+	0	NA	intron (NM_014767, intron 7 of 11)	intron (NM_014767, intron 7 of 11)	20601	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
44936	chr11	116770501	116770700	+	0	NA	intron (NM_032725, intron 1 of 9)	AluY|SINE|Alu	2387	NM_032725	84811		NM_032725	ENSG00000137656	BUD13	Cwc26|fSAP71	BUD13 homolog	protein-coding
186074	chr5	134094071	134094230	+	0	NA	Intergenic	Intergenic	-20531	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
192940	chr6	27777021	27777280	+	0	NA	Intergenic	Intergenic	15406	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
175982	chr4	81506701	81506900	+	0	NA	Intergenic	LTR16B1|LTR|ERVL	-34893	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
187423	chr5	142012151	142013480	+	0	NA	intron (NM_005471, intron 1 of 6)	CpG	212	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
192696	chr6	26295601	26295980	+	0	NA	Intergenic	HERVK3-int|LTR|ERVK	-10256	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
164542	chr3	63960001	63960830	+	0	NA	intron (NM_001177387, intron 4 of 12)	L2a|LINE|L2	-7379	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
204326	chr7	2717251	2718100	+	0	NA	3' UTR (NM_133463, exon 7 of 7)	3' UTR (NM_133463, exon 7 of 7)	29473	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
45561	chr11	118788201	118789400	+	0	NA	intron (NM_004397, intron 1 of 13)	AluSz6|SINE|Alu	2148	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
41569	chr11	66331571	66331730	+	0	NA	3' UTR (NM_001363559, exon 10 of 10)	3' UTR (NM_001363559, exon 10 of 10)	4784	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
222297	chr8	133473571	133473980	+	0	NA	intron (NM_173344, intron 5 of 9)	MER20|DNA|hAT-Charlie	98112	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
53557	chr12	67589971	67591000	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-58260	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
175213	chr4	56799721	56800700	+	0	NA	Intergenic	Intergenic	21263	NR_073419	6691		NM_021114	ENSG00000128040	SPINK2	HUSI-II|SPGF29	serine peptidase inhibitor Kazal type 2	protein-coding
101725	chr17	68759651	68759950	+	0	NA	Intergenic	Intergenic	131646	NR_110825	101928104		NR_110825	ENSG00000267659	LINC01482	-	long intergenic non-protein coding RNA 1482	ncRNA
232453	chr9	136132801	136133850	+	0	NA	Intergenic	(CCGCC)n|Simple_repeat|Simple_repeat	14305	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
10868	chr1	78001771	78001930	+	0	NA	intron (NM_001317100, intron 2 of 3)	intron (NM_001317100, intron 2 of 3)	-2978	NM_001317103	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
155021	chr22	37425371	37425530	+	0	NA	intron (NM_052906, intron 1 of 2)	intron (NM_052906, intron 1 of 2)	2020	NR_110512	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
111402	chr19	3765721	3766080	+	0	NA	intron (NM_172251, intron 2 of 2)	AluSx|SINE|Alu	3218	NM_172251	116541		NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54|mL54	mitochondrial ribosomal protein L54	protein-coding
224593	chr9	20356451	20356830	+	0	NA	intron (NM_001286691, intron 8 of 10)	intron (NM_001286691, intron 8 of 10)	54598	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
196211	chr6	42774551	42776050	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	-8196	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
145020	chr20	37914801	37915430	+	0	NA	intron (NM_080607, intron 1 of 3)	intron (NM_080607, intron 1 of 3)	11988	NM_080607	128434		NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
1860	chr1	6395251	6395880	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-1798	NM_007274	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
202546	chr6	158642701	158643600	+	0	NA	intron (NM_006519, intron 1 of 4)	intron (NM_006519, intron 1 of 4)	1593	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
210244	chr7	99385571	99386030	+	0	NA	intron (NM_005720, intron 2 of 9)	intron (NM_005720, intron 2 of 9)	11070	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
171208	chr3	195727651	195727950	+	0	NA	intron (NM_020790, intron 4 of 5)	intron (NM_020790, intron 4 of 5)	6822	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
10161	chr1	61056671	61057780	+	0	NA	Intergenic	Intergenic	-20002	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
105853	chr18	3037421	3038030	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-24581	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
162322	chr3	47476971	47477130	+	0	NA	Intergenic	Intergenic	-1109	NM_001320044	22937		NM_012235	ENSG00000114650	SCAP	-	SREBF chaperone	protein-coding
9653	chr1	52626301	52626700	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-6668	NR_135156	348378		NM_001042693	ENSG00000182183	SHISAL2A	FAM159A|PRO7171|WWLS2783	shisa like 2A	protein-coding
130826	chr2	87068501	87068980	+	0	NA	intron (NR_026846, intron 1 of 10)	intron (NR_026846, intron 1 of 10)	7673	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
166007	chr3	108155871	108156030	+	0	NA	Intergenic	Intergenic	30129	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
41738	chr11	66673371	66673750	+	0	NA	intron (NM_031492, intron 2 of 3)	AluSx|SINE|Alu	4327	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
40036	chr11	62695651	62695750	+	0	NA	intron (NR_037948, intron 4 of 11)	AluSq2|SINE|Alu	-6170	NM_203422	221091		NM_203422	ENSG00000177363	LRRN4CL	-	LRRN4 C-terminal like	protein-coding
229057	chr9	114343471	114343930	+	0	NA	intron (NM_001317952, intron 18 of 20)	intron (NM_001317952, intron 18 of 20)	13831	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
194999	chr6	35400271	35400630	+	0	NA	intron (NM_001171818, intron 3 of 8)	tRNA-Lys-AAG|tRNA|tRNA	-51888	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
188811	chr5	158677251	158677350	+	0	NA	Intergenic	Intergenic	-267527	NR_109888	101927697		NR_109888	ENSG00000276778	LINC02227	-	long intergenic non-protein coding RNA 2227	ncRNA
218943	chr8	60929001	60929750	+	0	NA	Intergenic	Intergenic	-18577	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
5143	chr1	24902321	24902600	+	0	NA	exon (NM_004350, exon 5 of 5)	exon (NM_004350, exon 5 of 5)	16956	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
12543	chr1	108642621	108642880	+	0	NA	Intergenic	Intergenic	18343	NM_001102592	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
39300	chr11	58597171	58597330	+	0	NA	intron (NM_053023, intron 2 of 10)	Tigger2|DNA|TcMar-Tigger	18136	NR_024091	386607		NM_170768		ZFP91-CNTF	ZFP91|ZNF757|Zfp-91	ZFP91-CNTF readthrough (NMD candidate)	ncRNA
233892	chrX	1595021	1595280	+	0	NA	promoter-TSS (NM_004043)	promoter-TSS (NM_004043)	-305	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
25237	chr10	6000901	6001930	+	0	NA	Intergenic	Intergenic	-22674	NM_001351095	3601		NM_002189	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor subunit alpha	protein-coding
219337	chr8	70221721	70221980	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	-150598	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
188536	chr5	156128251	156128550	+	0	NA	Intergenic	L1ME2|LINE|L1	-198764	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
137799	chr2	199916171	199916330	+	0	NA	intron (NM_153689, intron 1 of 1)	THE1C|LTR|ERVL-MaLR	4957	NM_153689	205327		NM_153689	ENSG00000178074	C2orf69	COXPD53	chromosome 2 open reading frame 69	protein-coding
110404	chr19	1951521	1951930	+	0	NA	TTS (NR_033400)	TTS (NR_033400)	2824	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
120451	chr19	44570871	44571130	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-14083	NR_027754	388550		NR_027754	ENSG00000290603	CEACAM22P	-	CEA cell adhesion molecule 22, pseudogene	pseudo
207797	chr7	50266601	50268750	+	0	NA	Intergenic	Intergenic	-36389	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
98251	chr17	46174921	46175530	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	17557	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
181881	chr5	54519571	54519950	+	0	NA	exon (NM_052870, exon 1 of 1)	exon (NM_052870, exon 1 of 1)	2001	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
2673	chr1	10517251	10517550	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	42450	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
136052	chr2	172586421	172586830	+	0	NA	intron (NR_103729, intron 9 of 11)	intron (NR_103729, intron 9 of 11)	30535	NM_001278549	5163		NM_002610	ENSG00000152256	PDK1	-	pyruvate dehydrogenase kinase 1	protein-coding
38352	chr11	44589321	44589780	+	0	NA	intron (NM_002231, intron 2 of 9)	intron (NM_002231, intron 2 of 9)	23887	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
90097	chr16	90037051	90037150	+	0	NA	intron (NM_001286209, intron 6 of 10)	intron (NM_001286209, intron 6 of 10)	-7199	NR_122031	750		NM_001214	ENSG00000221819	GAS8-AS1	C16orf3	GAS8 antisense RNA 1	ncRNA
211242	chr7	102650751	102650850	+	0	NA	intron (NM_001166339, intron 1 of 8).2	AluSq2|SINE|Alu	475	NM_001031618	441273		NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1|SPDYB2L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
55678	chr12	107441851	107442200	+	0	NA	intron (NM_001347944, intron 1 of 14)	MER5B|DNA|hAT-Charlie	121437	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
29133	chr10	68530001	68530400	+	0	NA	Intergenic	LTR10C|LTR|ERV1	-2677	NM_001324317	8034		NM_152707	ENSG00000122912	SLC25A16	D10S105E|GDA|GDC|HGT.1|ML7|hGP|hML7	solute carrier family 25 member 16	protein-coding
17430	chr1	156663571	156663930	+	0	NA	Intergenic	AluJr|SINE|Alu	13657	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
7689	chr1	35886851	35887250	+	0	NA	intron (NM_001317122, intron 1 of 18)	intron (NM_001317122, intron 1 of 18)	3841	NM_012199	26523		NM_012199	ENSG00000092847	AGO1	EIF2C|EIF2C1|GERP95|NEDLBAS|Q99|hAgo1	argonaute RISC component 1	protein-coding
209581	chr7	77481571	77481930	+	0	NA	Intergenic	Intergenic	-55545	NM_002835	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
148438	chr20	63973471	63974930	+	0	NA	TTS (NM_080621)	TTS (NM_080621)	-4270	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
141635	chr2	241705051	241705550	+	0	NA	intron (NM_032329, intron 2 of 7)	AluY|SINE|Alu	3261	NM_001330162	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
119080	chr19	39201471	39201630	+	0	NA	3' UTR (NM_001001414, exon 6 of 6)	3' UTR (NM_001001414, exon 6 of 6)	2713	NM_001080468	342898		NM_001080468	ENSG00000179751	SYCN	INSSA1|SYL	syncollin	protein-coding
164746	chr3	69049951	69050280	+	0	NA	intron (NM_001363879, intron 1 of 16)	AluSz6|SINE|Alu	-1080	NR_036087	100422859		NR_036087	ENSG00000265355	MIR3136	mir-3136	microRNA 3136	ncRNA
55367	chr12	104288611	104289680	+	0	NA	intron (NM_001261446, intron 2 of 13)	CpG-5906	2113	NM_182743	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
157061	chr22	42588671	42589630	+	0	NA	intron (NM_001278657, intron 7 of 8)	AluSz6|SINE|Alu	-7139	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
212486	chr7	128540201	128540400	+	0	NA	Intergenic	AluSq2|SINE|Alu	63552	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
220275	chr8	97777251	97777350	+	0	NA	intron (NM_018407, intron 1 of 6)	AluSx3|SINE|Alu	1512	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
43351	chr11	76674271	76674430	+	0	NA	Intergenic	MIR|SINE|MIR	-3603	NM_001128922	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
42831	chr11	72924601	72924900	+	0	NA	intron (NM_014824, intron 8 of 19)	intron (NM_014824, intron 8 of 19)	110339	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
127402	chr2	42050071	42050230	+	0	NA	intron (NM_138370, intron 1 of 6)	intron (NM_138370, intron 1 of 6)	2129	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
153755	chr22	29387571	29389150	+	0	NA	intron (NM_001378564, intron 1 of 20)	CpG	210	NM_001378565	162		NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2|KIDAR	adaptor related protein complex 1 subunit beta 1	protein-coding
187231	chr5	141320121	141321230	+	0	NA	5' UTR (NM_005642, exon 1 of 1)	5' UTR (NM_005642, exon 1 of 1)	109	NM_005642	6879		NM_005642	ENSG00000178913	TAF7	TAF2F|TAFII55	TATA-box binding protein associated factor 7	protein-coding
205319	chr7	12291871	12292050	+	0	NA	Intergenic	MER52-int|LTR|ERV1	80666	NM_001134232	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
154235	chr22	31583721	31583980	+	0	NA	intron (NM_001007467, intron 12 of 32)	intron (NM_001007467, intron 12 of 32)	37681	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
33480	chr10	119077351	119078030	+	0	NA	intron (NM_003750, intron 1 of 21)	AluY|SINE|Alu	3127	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
135317	chr2	160334451	160334880	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	-62770	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
16101	chr1	153626571	153626930	+	0	NA	intron (NM_001024210, intron 3 of 4)	intron (NM_001024210, intron 3 of 4)	298	NM_001024213	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
151183	chr21	45076271	45076950	+	0	NA	intron (NM_001346688, intron 1 of 11)	intron (NM_001346688, intron 1 of 11)	1559	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
106607	chr18	22282221	22283480	+	0	NA	Intergenic	Intergenic	113261	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
236609	chrX	74343951	74344480	+	0	NA	Intergenic	LTR55|LTR|ERVL?	40035	NM_203303	389874		NM_203303	ENSG00000187969	ZCCHC13	CNBP2|ZNF9L	zinc finger CCHC-type containing 13	protein-coding
41493	chr11	66245921	66246530	+	0	NA	Intergenic	Intergenic	-11069	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
185463	chr5	131276121	131276780	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluJb|SINE|Alu	12397	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
184065	chr5	93261451	93261550	+	0	NA	Intergenic	L1PA3|LINE|L1	309843	NR_109825	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
129254	chr2	68374501	68375100	+	0	NA	intron (NM_002664, intron 1 of 8)	L1ME3|LINE|L1	9518	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
119201	chr19	39440101	39441330	+	0	NA	Intergenic	AluSc|SINE|Alu	-4766	NM_001363860	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
170846	chr3	190586671	190587180	+	0	NA	intron (NR_157352, intron 3 of 10)	intron (NR_157352, intron 3 of 10)	72840	NM_134470	3556		NM_002182	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
99505	chr17	50202821	50204080	+	0	NA	Intergenic	Intergenic	-1819	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
42138	chr11	67644701	67644900	+	0	NA	exon (NM_080658, exon 7 of 8)	exon (NM_080658, exon 7 of 8)	-5240	NM_005995	347853		NM_005995	ENSG00000167800	TBX10	TBX13|TBX7	T-box transcription factor 10	protein-coding
166444	chr3	113947561	113948930	+	0	NA	intron (NM_173570, intron 1 of 5)	CpG	232	NM_001320467	254887		NM_173570	ENSG00000184307	ZDHHC23	DHHC-23|NIDD	zinc finger DHHC-type palmitoyltransferase 23	protein-coding
202742	chr6	159013251	159013750	+	0	NA	Intergenic	Intergenic	-13298	NM_031924	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
228741	chr9	109937971	109938130	+	0	NA	intron (NM_147150, intron 6 of 9)	intron (NM_147150, intron 6 of 9)	-110548	NM_001004065	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
94997	chr17	32357671	32358330	+	0	NA	intron (NM_001098507, intron 2 of 11)	AluSx|SINE|Alu	7843	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
236959	chrX	101258051	101258150	+	0	NA	intron (NM_001171184, intron 19 of 21)	intron (NM_001171184, intron 19 of 21)	33234	NM_001168474	54457		NM_024885	ENSG00000102387	TAF7L	CT40|TAF2Q	TATA-box binding protein associated factor 7 like	protein-coding
16808	chr1	155565901	155566550	+	0	NA	Intergenic	Intergenic	-3422	NM_001366177	55870		NM_018489	ENSG00000116539	ASH1L	ASH1|ASH1L1|KMT2H|MRD52	ASH1 like histone lysine methyltransferase	protein-coding
106957	chr18	31634251	31634900	+	0	NA	intron (NM_001378109, intron 5 of 8)	HAL1|LINE|L1	42698	NM_000371	7276		NM_000371	ENSG00000118271	TTR	ATTR|CTS|CTS1|HEL111|HsT2651|PALB|TBPA|TTN	transthyretin	protein-coding
158113	chr22	50032201	50032500	+	0	NA	intron (NM_001350317, intron 11 of 13)	intron (NM_001350317, intron 11 of 13)	-19585	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
118193	chr19	35126771	35126930	+	0	NA	intron (NM_139284, intron 7 of 8)	intron (NM_139284, intron 7 of 8)	4150	NR_106947	102466205		NR_106947	ENSG00000284065	MIR6887	hsa-mir-6887	microRNA 6887	ncRNA
9441	chr1	49102801	49103280	+	0	NA	intron (NR_136623, intron 3 of 12)	intron (NR_136623, intron 3 of 12)	-154371	NR_125988	101929721		NR_125988	ENSG00000230114	AGBL4-AS1	-	AGBL4 antisense RNA 1	ncRNA
452	chr1	1130301	1130930	+	0	NA	Intergenic	HAL1|LINE|L1	-6402	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
147060	chr20	53700751	53701250	+	0	NA	Intergenic	L1MD2|LINE|L1	92646	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
57047	chr12	120835971	120836130	+	0	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	68308	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
60340	chr13	40768471	40769230	+	0	NA	intron (NM_005830, intron 1 of 6)	MIRc|SINE|MIR	2340	NM_005830	10240		NM_005830	ENSG00000102738	MRPS31	IMOGN38|MRP-S31|S31mt|mS31	mitochondrial ribosomal protein S31	protein-coding
222279	chr8	133302851	133303790	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-6068	NM_001258433	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
118342	chr19	35630851	35631150	+	0	NA	intron (NM_024321, intron 2 of 9)	L2a|LINE|L2	1964	NM_024321	79171		NM_024321	ENSG00000126254	RBM42	-	RNA binding motif protein 42	protein-coding
148867	chr21	8432801	8434000	+	0	NA	TTS (NR_106782).4	TTS (NR_106782).4	178	NR_046235	100861532		NR_046235		RNA45SN5	RNA45S5	RNA, 45S pre-ribosomal N5	rRNA
19823	chr1	182790871	182791230	+	0	NA	intron (NM_001200050, intron 1 of 10)	intron (NM_001200050, intron 1 of 10)	1277	NM_001200056	80896		NM_030769	ENSG00000135838	NPL	C112|C1orf13|NAL|NPL1	N-acetylneuraminate pyruvate lyase	protein-coding
204415	chr7	3102401	3102980	+	0	NA	Intergenic	AluY|SINE|Alu	55883	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
90129	chr16	90169101	90169700	+	0	NA	intron (NR_126161, intron 3 of 3)	intron (NR_126161, intron 3 of 3)	67136	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
199828	chr6	127741021	127741280	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	114038	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
121145	chr19	46269121	46269380	+	0	NA	Intergenic	L1M4|LINE|L1	-27792	NM_152795	64344		NM_022462	ENSG00000124440	HIF3A	HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3 subunit alpha	protein-coding
205013	chr7	6483601	6485030	+	0	NA	promoter-TSS (NM_001100603)	promoter-TSS (NM_001100603)	-163	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
19992	chr1	185156091	185158050	+	0	NA	promoter-TSS (NM_001202423)	promoter-TSS (NM_001202423)	10	NM_001105518	54823		NM_017673	ENSG00000116668	SWT1	C1orf26|HsSwt1	SWT1 RNA endoribonuclease homolog	protein-coding
30416	chr10	78977071	78977230	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	90298	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
97012	chr17	42297551	42297880	+	0	NA	intron (NM_001288719, intron 4 of 17)	intron (NM_001288719, intron 4 of 17)	9659	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
215509	chr7	158698721	158699380	+	0	NA	intron (NM_001281932, intron 3 of 28)	AluJr|SINE|Alu	5754	NM_001281932	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
70226	chr14	100645401	100646030	+	0	NA	Intergenic	LTR41|LTR|ERVL	-11553	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
52485	chr12	55997021	55997750	+	0	NA	TTS (NM_001252037)	TTS (NM_001252037)	109	NM_000456	6821		NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
193291	chr6	30069951	30070500	+	0	NA	TTS (NM_170769)	TTS (NM_170769)	3027	NM_021959	6992		NM_021959	ENSG00000204619	PPP1R11	CFAP255|HCG-V|HCGV|IPP3|TCTE5|TCTEX5	protein phosphatase 1 regulatory inhibitor subunit 11	protein-coding
183555	chr5	80133851	80133950	+	0	NA	intron (NR_126061, intron 11 of 13)	LTR8|LTR|ERV1	-50235	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
111927	chr19	4728421	4728680	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4708	NR_169285	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
204688	chr7	5506251	5506550	+	0	NA	intron (NM_024963, intron 1 of 4)	AluSx1|SINE|Alu	7409	NM_001363441	80028		NM_024963	ENSG00000155034	FBXL18	Fbl18	F-box and leucine rich repeat protein 18	protein-coding
127174	chr2	38353571	38354130	+	0	NA	intron (NM_001330462, intron 1 of 13)	L1MEf|LINE|L1	22680	NM_001330460	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
201008	chr6	141077671	141077980	+	0	NA	Intergenic	L1PB1|LINE|L1	394011	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
125967	chr2	25249701	25249900	+	0	NA	intron (NM_153759, intron 1 of 18)	intron (NM_153759, intron 1 of 18)	2331	NM_001320893	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
135084	chr2	157194071	157194300	+	0	NA	Intergenic	Intergenic	-63520	NM_014568	11227		NM_014568	ENSG00000136542	GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
59564	chr13	27380021	27380450	+	0	NA	Intergenic	Intergenic	-44384	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
145593	chr20	44535871	44536030	+	0	NA	intron (NM_007066, intron 1 of 3)	L1MB2|LINE|L1	4075	NM_007066	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
224020	chr9	2859771	2860130	+	0	NA	Intergenic	L3|LINE|CR1	-15855	NM_014878	9933		NM_014878	ENSG00000080608	PUM3	HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5	pumilio RNA binding family member 3	protein-coding
43896	chr11	88434371	88434530	+	0	NA	Intergenic	LTR18B|LTR|ERVL	-70126	NR_049724	100873989		NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
73597	chr15	44545921	44547250	+	0	NA	intron (NM_001284336, intron 2 of 5)	intron (NM_001284336, intron 2 of 5)	9438	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
54501	chr12	92093101	92093300	+	0	NA	intron (NR_132341, intron 1 of 4)	AluJb|SINE|Alu	48513	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
19781	chr1	182382501	182383100	+	0	NA	3' UTR (NM_002065, exon 8 of 8)	3' UTR (NM_002065, exon 8 of 8)	8604	NM_001033056	2752		NM_002065	ENSG00000135821	GLUL	DEE116|GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
35372	chr11	1264121	1264850	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	7880	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
197918	chr6	89435901	89436300	+	0	NA	intron (NM_014942, intron 1 of 15)	MER119|DNA|hAT-Charlie	2922	NM_014942	22881		NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
236731	chrX	78119251	78119350	+	0	NA	intron (NM_000291, intron 6 of 10)	intron (NM_000291, intron 6 of 10)	15052	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
67304	chr14	69574321	69575020	+	0	NA	5' UTR (NM_001271507, exon 1 of 2)	5' UTR (NM_001271507, exon 1 of 2)	201	NM_001271507	56936		NM_020181	ENSG00000267909	CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
91279	chr17	4110351	4110650	+	0	NA	intron (NM_015113, intron 5 of 54)	intron (NM_015113, intron 5 of 54)	32530	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
95271	chr17	35500671	35501300	+	0	NA	intron (NM_001363830, intron 2 of 4)	LTR2|LTR|ERV1	-13246	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
105289	chr17	82491271	82491630	+	0	NA	TTS (NM_001083608)	TTS (NM_001083608)	-28282	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
235287	chrX	41933501	41934180	+	0	NA	Intergenic	Intergenic	-10286	NM_001367721	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
194124	chr6	31966351	31966450	+	0	NA	intron (NM_006929, intron 18 of 27).3	AluJb|SINE|Alu	-4775	NR_026717	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
74141	chr15	55253251	55253950	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	16686	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
160771	chr3	32733651	32733850	+	0	NA	intron (NM_001256742, intron 11 of 18)	intron (NM_001256742, intron 11 of 18)	38209	NM_001256742	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
71176	chr14	105046851	105047350	+	0	NA	Intergenic	Intergenic	18330	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
31909	chr10	100433621	100434180	+	0	NA	Intergenic	Intergenic	-29109	NM_003393	7479		NM_003393	ENSG00000075290	WNT8B	-	Wnt family member 8B	protein-coding
35901	chr11	2412451	2413330	+	0	NA	exon (NM_014555, exon 15 of 24)	exon (NM_014555, exon 15 of 24)	10155	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
58658	chr12	132526221	132526480	+	0	NA	intron (NM_001382740, intron 3 of 11)	intron (NM_001382740, intron 3 of 11)	20944	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
134718	chr2	144515511	144516500	+	0	NA	intron (NR_033258, intron 2 of 2)	CpG	-3609	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
27016	chr10	26841001	26841200	+	0	NA	intron (NM_001178116, intron 1 of 11)	MER58A|DNA|hAT-Charlie	19858	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
72572	chr15	34581701	34581900	+	0	NA	intron (NR_027410, intron 1 of 23)	intron (NR_027410, intron 1 of 23)	1770	NR_027410	440270		NM_001023567	ENSG00000215252	GOLGA8B	GOLGA5	golgin A8 family member B	protein-coding
168245	chr3	141386621	141386880	+	0	NA	promoter-TSS (NM_001376162)	promoter-TSS (NM_001376162)	-120	NM_001376167	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
83153	chr16	23457121	23457380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4061	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
158736	chr3	8966601	8967200	+	0	NA	Intergenic	Intergenic	-3428	NM_020165	56852		NM_020165	ENSG00000070950	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
174871	chr4	48736451	48737880	+	0	NA	intron (NM_015030, intron 1 of 63)	AluSx|SINE|Alu	43114	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
221995	chr8	130008851	130009530	+	0	NA	promoter-TSS (NR_049826)	promoter-TSS (NR_049826)	-737	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
61187	chr13	49247421	49249130	+	0	NA	promoter-TSS (NR_135318)	promoter-TSS (NR_135318)	350	NR_036439	81602		NM_030911	ENSG00000102543	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
110172	chr19	1656921	1657230	+	0	NA	Intergenic	Intergenic	-4460	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
74848	chr15	63518821	63519280	+	0	NA	intron (NR_046342, intron 1 of 15)	AluY|SINE|Alu	14457	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
1271	chr1	2312601	2314000	+	0	NA	Intergenic	Intergenic	39361	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
8591	chr1	41396651	41396950	+	0	NA	Intergenic	Intergenic	-21131	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
130595	chr2	85873551	85873930	+	0	NA	intron (NM_001354223, intron 1 of 8)	intron (NM_001354223, intron 1 of 8)	-6070	NM_001042437	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
194670	chr6	33663501	33663900	+	0	NA	intron (NM_002224, intron 10 of 57)	intron (NM_002224, intron 10 of 57)	-29955	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
24484	chr1	244297801	244298200	+	0	NA	Intergenic	AluSc|SINE|Alu	-54635	NM_001276348	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
142384	chr20	3809721	3809980	+	0	NA	intron (NR_109859, intron 1 of 3)	AluJb|SINE|Alu	1356	NR_109859	101929125		NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
41075	chr11	65508101	65509000	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1118	NR_145459	109136579		NR_145459	ENSG00000289740	TALAM1	-	TALAM1 transcript, MALAT1 antisense RNA	ncRNA
65381	chr14	50727601	50727800	+	0	NA	exon (NM_182944, exon 30 of 30)	exon (NM_182944, exon 30 of 30)	-59394	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
61389	chr13	51532851	51533150	+	0	NA	Intergenic	Intergenic	-19589	NR_039852	100616423		NR_039852	ENSG00000266611	MIR4703	-	microRNA 4703	ncRNA
223975	chr9	2022521	2023050	+	0	NA	intron (NM_001289396, intron 1 of 33)	intron (NM_001289396, intron 1 of 33)	840	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
181014	chr5	35854201	35854900	+	0	NA	Intergenic	Intergenic	-2341	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
85497	chr16	50751271	50751630	+	0	NA	intron (NM_001378755, intron 3 of 17)	intron (NM_001378755, intron 3 of 17)	9035	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
33266	chr10	114516571	114516730	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	10263	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
95751	chr17	38601271	38602250	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	4192	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
91759	chr17	6842871	6843550	+	0	NA	Intergenic	Intergenic	-10366	NR_002710	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
53231	chr12	62336051	62336350	+	0	NA	3' UTR (NM_001252079, exon 7 of 7)	3' UTR (NM_001252079, exon 7 of 7)	75796	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
37984	chr11	35013561	35014700	+	0	NA	Intergenic	Intergenic	72293	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
209306	chr7	76010301	76010730	+	0	NA	intron (NM_001317787, intron 3 of 6)	intron (NM_001317787, intron 3 of 6)	-15920	NM_031925	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
170879	chr3	192916551	192917400	+	0	NA	intron (NM_178496, intron 1 of 1)	CpG	881	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
84603	chr16	30669251	30669550	+	0	NA	exon (NM_001105079, exon 18 of 18)	exon (NM_001105079, exon 18 of 18)	10969	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
188084	chr5	150175601	150175800	+	0	NA	intron (NM_001804, intron 1 of 2)	intron (NM_001804, intron 1 of 2)	8922	NM_001804	1044		NM_001804	ENSG00000113722	CDX1	-	caudal type homeobox 1	protein-coding
174377	chr4	38993851	38993950	+	0	NA	exon (NM_024943, exon 3 of 7)	exon (NM_024943, exon 3 of 7)	38509	NM_024943	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
232188	chr9	134207071	134207230	+	0	NA	Intergenic	Intergenic	-42586	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
29880	chr10	72801301	72801700	+	0	NA	intron (NR_073062, intron 3 of 9)	intron (NR_073062, intron 3 of 9)	80471	NR_039823	100616286		NR_039823	ENSG00000266719	MIR4676	-	microRNA 4676	ncRNA
125355	chr2	11073451	11073550	+	0	NA	Intergenic	Intergenic	58676	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
7078	chr1	32024901	32025950	+	0	NA	intron (NR_073498, intron 1 of 8)	AluSx|SINE|Alu	11557	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
5011	chr1	24475621	24476130	+	0	NA	Intergenic	Intergenic	-26469	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
63124	chr13	113380951	113381380	+	0	NA	Intergenic	MER41A|LTR|ERV1	-17017	NM_001286733	79774		NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
18644	chr1	166885001	166885300	+	0	NA	Intergenic	MIRc|SINE|MIR	-8886	NM_053053	117143		NM_053053	ENSG00000152382	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
28737	chr10	61963501	61964250	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	62176	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
149894	chr21	36104501	36105050	+	0	NA	promoter-TSS (NR_147887)	promoter-TSS (NR_147887)	-106	NR_147887	105369306		NR_147887	ENSG00000233393	LOC105369306	-	uncharacterized LOC105369306	ncRNA
196354	chr6	43223451	43223550	+	0	NA	intron (NM_015089, intron 39 of 40)	intron (NM_015089, intron 39 of 40)	5981	NM_199184	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
48596	chr12	10317771	10318130	+	0	NA	TTS (NM_007334)	TTS (NM_007334)	10080	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
114433	chr19	12688101	12688300	+	0	NA	TTS (NM_032301)	TTS (NM_032301)	202	NM_001316692	105372280		NM_001316692	ENSG00000283980	GNG14	HG3K	G protein subunit gamma 14	protein-coding
78897	chr15	101099271	101099500	+	0	NA	Intergenic	Intergenic	152663	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
10378	chr1	64963601	64963950	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	2774	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
115035	chr19	14112671	14112830	+	0	NA	intron (NM_002730, intron 1 of 9)	intron (NM_002730, intron 1 of 9)	1441	NM_207518	5566		NM_002730	ENSG00000072062	PRKACA	CAFD1|PKACA|PPNAD4	protein kinase cAMP-activated catalytic subunit alpha	protein-coding
164779	chr3	69197801	69198550	+	0	NA	intron (NM_015123, intron 12 of 22)	intron (NM_015123, intron 12 of 22)	-75580	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
103428	chr17	78254211	78255330	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	6454	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
10667	chr1	70866901	70867100	+	0	NA	intron (NR_028294, intron 3 of 5)	intron (NR_028294, intron 3 of 5)	160547	NR_125938	101927244		NR_125938	ENSG00000229051	LINC01788	-	long intergenic non-protein coding RNA 1788	ncRNA
142230	chr20	3092371	3093200	+	0	NA	Intergenic	CpG	-8061	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
487	chr1	1169501	1169900	+	0	NA	TTS (NR_029957)	TTS (NR_029957)	695	NR_029957	554210		NR_029957	ENSG00000198976	MIR429	MIRN429|hsa-mir-429|mir-429	microRNA 429	ncRNA
23361	chr1	228154051	228154150	+	0	NA	intron (NM_020435, intron 1 of 1)	L1MC3|LINE|L1	4170	NM_020435	57165		NM_020435	ENSG00000198835	GJC2	CX46.6|Cx47|GJA12|HLD2|LMPH1C|LMPHM3|PMLDAR|SPG44	gap junction protein gamma 2	protein-coding
216130	chr8	11451651	11451950	+	0	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	14953	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
234394	chrX	16671051	16671350	+	0	NA	intron (NM_175859, intron 10 of 18)	intron (NM_175859, intron 10 of 18)	21042	NM_004057	795		NM_004057	ENSG00000169906	S100G	CABP|CABP1|CABP9K|CALB3	S100 calcium binding protein G	protein-coding
148361	chr20	63854371	63855300	+	0	NA	Intergenic	Intergenic	-6663	NM_080622	140701		NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
191271	chr6	6057501	6057700	+	0	NA	Intergenic	Intergenic	-49995	NM_001278710	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
179557	chr4	185165501	185166100	+	0	NA	intron (NM_020827, intron 3 of 4)	L1MB4|LINE|L1	22534	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
156929	chr22	42299551	42300180	+	0	NA	Intergenic	Intergenic	-15938	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
116636	chr19	18306861	18308450	+	0	NA	intron (NM_001252129, intron 3 of 3)	MIRc|SINE|MIR	15421	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
110068	chr19	1495071	1495550	+	0	NA	exon (NM_001329556, exon 2 of 6)	exon (NM_001329556, exon 2 of 6)	4129	NM_138393	92840		NM_138393	ENSG00000115255	REEP6	C19orf32|DP1L1|REEP6.1|REEP6.2|RP77|TB1|TB2L1|Yip2f	receptor accessory protein 6	protein-coding
86672	chr16	67486671	67486830	+	0	NA	Intergenic	Intergenic	-3203	NM_001138	181		NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related neuropeptide	protein-coding
158360	chr22	50466171	50466550	+	0	NA	exon (NM_001365819, exon 7 of 40)	exon (NM_001365819, exon 7 of 40)	8675	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
100894	chr17	64394621	64394900	+	0	NA	Intergenic	Intergenic	-3900	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
107088	chr18	35039051	35039150	+	0	NA	intron (NM_001143826, intron 2 of 7)	intron (NM_001143826, intron 2 of 7)	-2313	NR_046177	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
233725	chrX	1355321	1356280	+	0	NA	intron (NM_001267713, intron 4 of 9).2	intron (NM_001267713, intron 4 of 9).2	19015	NM_002183	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
183632	chr5	80233621	80233880	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	22298	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
182061	chr5	55941121	55941380	+	0	NA	non-coding (NR_120480, exon 18 of 18)	non-coding (NR_120480, exon 18 of 18)	53713	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
227126	chr9	86157471	86157630	+	0	NA	TTS (NR_110996)	TTS (NR_110996)	30010	NR_110996	101927623		NR_110996		LOC101927623	-	uncharacterized LOC101927623	ncRNA
46710	chr11	128841571	128842150	+	0	NA	intron (NM_153764, intron 1 of 1)	intron (NM_153764, intron 1 of 1)	609	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
144198	chr20	34302621	34304080	+	0	NA	promoter-TSS (NM_000687)	promoter-TSS (NM_000687)	5	NM_001362750	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
152231	chr22	20154871	20155900	+	0	NA	Intergenic	CpG	-4330	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
239015	chrY	2934421	2935400	+	0	NA	promoter-TSS (NM_001369702)	promoter-TSS (NM_001369702)	-471	NM_001369706	7544		NM_003411	ENSG00000067646	ZFY	ZNF911	zinc finger protein Y-linked	protein-coding
90327	chr17	1146371	1146930	+	0	NA	intron (NM_001322841, intron 1 of 22)	(CTGCCACCA)n|Simple_repeat|Simple_repeat	-20078	NM_001322840	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
127620	chr2	43052151	43052250	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-12657	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
13934	chr1	120179401	120179600	+	0	NA	Intergenic	Intergenic	-2980	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
135811	chr2	170179401	170179600	+	0	NA	intron (NR_045682, intron 1 of 35)	MSTD|LTR|ERVL-MaLR	1353	NR_045684	140469		NM_138995	ENSG00000071909	MYO3B	-	myosin IIIB	protein-coding
156194	chr22	40275971	40277080	+	0	NA	intron (NM_015088, intron 6 of 20)	intron (NM_015088, intron 6 of 20)	-69975	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
116114	chr19	17311751	17313580	+	0	NA	intron (NM_024050, intron 1 of 4)	L2a|LINE|L2	3102	NM_024050	79016		NM_024050	ENSG00000130311	DDA1	C19orf58|PCIA1	DET1 and DDB1 associated 1	protein-coding
221482	chr8	124487551	124488080	+	0	NA	TTS (NM_001317890)	TTS (NM_001317890)	12935	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
166050	chr3	108805951	108807280	+	0	NA	Intergenic	Intergenic	-16171	NM_001317747	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
135536	chr2	162315721	162316180	+	0	NA	intron (NM_022168, intron 1 of 15)	intron (NM_022168, intron 1 of 15)	2734	NM_022168	64135		NM_022168	ENSG00000115267	IFIH1	AGS7|Hlcd|IDDM19|IMD95|MDA-5|MDA5|RLR-2|SGMRT1	interferon induced with helicase C domain 1	protein-coding
197692	chr6	85641401	85642300	+	0	NA	promoter-TSS (NM_001159675)	promoter-TSS (NM_001159675)	-399	NM_001159676	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
80969	chr16	3884701	3885100	+	0	NA	Intergenic	AluSp|SINE|Alu	-4187	NM_004380	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
51868	chr12	53487651	53487750	+	0	NA	intron (NM_006301, intron 1 of 14)	intron (NM_006301, intron 1 of 14)	11758	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
228412	chr9	99221071	99222850	+	0	NA	promoter-TSS (NR_024532)	promoter-TSS (NR_024532)	-18	NR_024532	85365		NM_033087	ENSG00000119523	ALG2	CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2	ALG2 alpha-1,3/1,6-mannosyltransferase	protein-coding
150016	chr21	37220221	37221750	+	0	NA	non-coding (NR_026719, exon 3 of 3)	non-coding (NR_026719, exon 3 of 3)	12482	NR_026719	257203		NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9	ncRNA
110096	chr19	1528001	1528200	+	0	NA	exon (NM_001243079, exon 7 of 14)	exon (NM_001243079, exon 7 of 14)	4023	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
202411	chr6	157879821	157880080	+	0	NA	intron (NM_016224, intron 4 of 17)	intron (NM_016224, intron 4 of 17)	56704	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
32532	chr10	103068771	103068930	+	0	NA	intron (NM_199076, intron 5 of 6)	L1ME3A|LINE|L1	84971	NM_001351191	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
8468	chr1	40783171	40784900	+	0	NA	5' UTR (NM_004700, exon 1 of 14)	5' UTR (NM_004700, exon 1 of 14)	248	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
207542	chr7	44834621	44835080	+	0	NA	intron (NM_201516, intron 3 of 3)	AluSx|SINE|Alu	13237	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
195382	chr6	36701571	36701730	+	0	NA	intron (NM_001257357, intron 1 of 13)	L2c|LINE|L2	3824	NM_001257357	401258		NM_207498	ENSG00000255587	RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
70703	chr14	103274151	103274250	+	0	NA	Intergenic	CpG	-43084	NR_135269	105378183		NR_135269		LOC105378183	-	uncharacterized LOC105378183	ncRNA
167326	chr3	128739121	128739380	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSx|SINE|Alu	13067	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
175778	chr4	77791021	77791280	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluSz|SINE|Alu	27914	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
31136	chr10	89615171	89615930	+	0	NA	intron (NM_148977, intron 1 of 6)	intron (NM_148977, intron 1 of 6)	-22723	NR_029524	406901		NR_029524	ENSG00000198997	MIR107	MIRN107|miR-107	microRNA 107	ncRNA
147119	chr20	53981851	53982100	+	0	NA	intron (NM_001366296, intron 7 of 10)	intron (NM_001366296, intron 7 of 10)	77045	NM_001323347	8537		NM_003657	ENSG00000064787	BCAS1	AIBC1|NABC1|PMES-2	brain enriched myelin associated protein 1	protein-coding
51161	chr12	50175151	50175730	+	0	NA	TTS (NM_016357)	TTS (NM_016357)	-7907	NM_001281731	91012		NM_147190	ENSG00000139624	CERS5	LASS5|Trh4	ceramide synthase 5	protein-coding
55169	chr12	100198021	100198280	+	0	NA	Intergenic	Intergenic	-1937	NM_022496	64431		NM_022496	ENSG00000075089	ACTR6	ARP6|CDA12|HSPC281|MSTP136|hARP6|hARPX	actin related protein 6	protein-coding
98948	chr17	48637951	48638650	+	0	NA	Intergenic	Intergenic	-5741	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
75332	chr15	65356571	65356800	+	0	NA	intron (NM_004884, intron 2 of 13)	intron (NM_004884, intron 2 of 13)	21317	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
144166	chr20	34075521	34076250	+	0	NA	exon (NM_007367, exon 5 of 9)	exon (NM_007367, exon 5 of 9)	26766	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
132599	chr2	108451871	108452030	+	0	NA	intron (NM_181453, intron 3 of 22)	AluSq|SINE|Alu	2744	NR_028063								
202597	chr6	158711271	158712030	+	0	NA	intron (NM_001242395, intron 8 of 15)	MER41A|LTR|ERV1	48247	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
69980	chr14	99945751	99946500	+	0	NA	Intergenic	L1MC5a|LINE|L1	-25297	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
219831	chr8	81722271	81722630	+	0	NA	Intergenic	Intergenic	-1146	NR_033194	79752		NM_024699	ENSG00000104231	ZFAND1	-	zinc finger AN1-type containing 1	protein-coding
77805	chr15	88466921	88468230	+	0	NA	promoter-TSS (NR_135915)	promoter-TSS (NR_135915)	-133	NM_001321972	64963		NM_022839	ENSG00000181991	MRPS11	HCC-2|MRP-S11|S11mt|uS11m	mitochondrial ribosomal protein S11	protein-coding
77491	chr15	84602751	84603500	+	0	NA	intron (NM_017894, intron 1 of 2)	intron (NM_017894, intron 1 of 2)	2116	NM_017894	54993		NM_017894	ENSG00000176371	ZSCAN2	ZFP29|ZNF854	zinc finger and SCAN domain containing 2	protein-coding
138463	chr2	206442751	206443930	+	0	NA	promoter-TSS (NM_003812)	promoter-TSS (NM_003812)	-192	NM_003812	8745		NM_003812	ENSG00000114948	ADAM23	MDC-3|MDC3	ADAM metallopeptidase domain 23	protein-coding
172340	chr4	1698601	1698800	+	0	NA	intron (NM_006527, intron 5 of 7)	AluSc8|SINE|Alu	13619	NM_001306075	7884		NM_006527	ENSG00000163950	SLBP	HBP	stem-loop histone mRNA binding protein	protein-coding
54429	chr12	91438371	91438530	+	0	NA	Intergenic	Intergenic	-255633	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
219516	chr8	74320451	74320850	+	0	NA	intron (NM_001317830, intron 1 of 5)	CpG	711	NM_001363050	56704		NM_020647	ENSG00000104369	JPH1	CMT2K|JP-1|JP1	junctophilin 1	protein-coding
188317	chr5	151210701	151211220	+	0	NA	intron (NM_015621, intron 1 of 8)	AluSz6|SINE|Alu	-1174	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
172875	chr4	3358921	3359630	+	0	NA	intron (NM_198229, intron 3 of 17)	(CCT)n|Simple_repeat|Simple_repeat	-10923	NM_198227	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
201464	chr6	148746001	148747300	+	0	NA	promoter-TSS (NM_005715)	promoter-TSS (NM_005715)	-380	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
84069	chr16	29596551	29596730	+	0	NA	intron (NR_135317, intron 1 of 11)	AluY|SINE|Alu	-1548	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
174520	chr4	40059601	40060200	+	0	NA	intron (NM_001318359, intron 1 of 18)	MIR|SINE|MIR	-2701	NR_027277	344967		NR_027277	ENSG00000293349	LOC344967	ACOT7L|BACHL	acyl-CoA thioesterase 7 pseudogene	pseudo
231872	chr9	132977401	132978130	+	0	NA	promoter-TSS (NM_001135031)	promoter-TSS (NM_001135031)	-929	NM_001135031	8328		NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding
87376	chr16	70436301	70437100	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	2400	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
141552	chr2	241461171	241461330	+	0	NA	intron (NM_001282984, intron 14 of 17)	L2|LINE|L2	-16655	NR_036083	100422942		NR_036083	ENSG00000263752	MIR3133	-	microRNA 3133	ncRNA
204293	chr7	2667071	2667230	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-12372	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
93638	chr17	19175371	19176000	+	0	NA	Intergenic	Intergenic	-12331	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
52296	chr12	54605771	54606230	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	4462	NR_003039	644076		NR_003039	ENSG00000293392	GLYCAM1	-	glycosylation dependent cell adhesion molecule 1 (pseudogene)	pseudo
190991	chr6	3051321	3051580	+	0	NA	Intergenic	Intergenic	-12517	NM_001317061	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
124459	chr19	58517851	58517950	+	0	NA	intron (NM_001316980, intron 1 of 2)	intron (NM_001316980, intron 1 of 2)	1702	NM_001316978	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
66613	chr14	63713851	63713950	+	0	NA	intron (NM_030791, intron 1 of 2)	Ricksha_b|DNA|MULE-MuDR	14165	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
192647	chr6	26166601	26166800	+	0	NA	intron (NM_138720, intron 1 of 1)	AluSx|SINE|Alu	8578	NM_021063	3017		NM_021063	ENSG00000158373	H2BC5	H2B.1B|H2B/a|H2B/b|H2B/g|H2B/h|H2B/k|H2B/l|H2BFA|H2BFB|H2BFG|H2BFH|H2BFK|H2BFL|HIRIP2|HIST1H2BC|HIST1H2BD|HIST1H2BE|HIST1H2BF|HIST1H2BG|HIST1H2BI|dJ221C16.6	H2B clustered histone 5	protein-coding
181387	chr5	40674551	40674990	+	0	NA	Intergenic	Intergenic	-5145	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
86225	chr16	58114421	58114680	+	0	NA	intron (NR_136632, intron 5 of 5)	intron (NR_136632, intron 5 of 5)	14831	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
222246	chr8	133195951	133196050	+	0	NA	intron (NM_001204870, intron 1 of 1)	intron (NM_001204870, intron 1 of 1)	4961	NM_080838	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
142017	chr20	1652821	1653780	+	0	NA	intron (NM_018556, intron 1 of 5)	MIR|SINE|MIR	4479	NM_080816	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
82380	chr16	16045651	16045950	+	0	NA	intron (NM_004996, intron 8 of 30)	intron (NM_004996, intron 8 of 30)	96184	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
98771	chr17	48124221	48124480	+	0	NA	TTS (NM_001330320)	TTS (NM_001330320)	16584	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
106365	chr18	13269521	13269780	+	0	NA	intron (NM_001378100, intron 1 of 6)	intron (NM_001378100, intron 1 of 6)	-7712	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207107	chr7	40700851	40701150	+	0	NA	intron (NM_001193311, intron 13 of 14)	intron (NM_001193311, intron 13 of 14)	278939	NR_110831	101928744		NR_110831	ENSG00000232458	LINC01450	-	long intergenic non-protein coding RNA 1450	ncRNA
137109	chr2	190986001	190986200	+	0	NA	intron (NM_139266, intron 14 of 22)	intron (NM_139266, intron 14 of 22)	28071	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
52024	chr12	53991821	53992900	+	0	NA	TTS (NR_029617)	TTS (NR_029617)	622	NR_029617	406973		NR_029617	ENSG00000207924	MIR196A2	MIRN196-2|MIRN196A2|mir-196a-2	microRNA 196a-2	ncRNA
164150	chr3	56764201	56764400	+	0	NA	intron (NM_001289698, intron 3 of 10)	Mam_R4|LINE|Dong-R4	11417	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
82464	chr16	17024651	17024750	+	0	NA	Intergenic	Intergenic	-109804	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
99532	chr17	50353521	50354480	+	0	NA	non-coding (NR_110010, exon 2 of 10)	non-coding (NR_110010, exon 2 of 10)	7874	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
155800	chr22	39303451	39303950	+	0	NA	Intergenic	AluJo|SINE|Alu	10211	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
220966	chr8	115076351	115076900	+	0	NA	Intergenic	Intergenic	591388	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
189422	chr5	172836201	172836950	+	0	NA	intron (NM_001031711, intron 1 of 9)	intron (NM_001031711, intron 1 of 9)	2324	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
56137	chr12	111074271	111074830	+	0	NA	intron (NM_015267, intron 1 of 21)	intron (NM_015267, intron 1 of 21)	-25454	NM_001370598	23316		NM_015267	ENSG00000111249	CUX2	CDP2|CUTL2|DEE67|EIEE67	cut like homeobox 2	protein-coding
102902	chr17	76544251	76544550	+	0	NA	non-coding (NR_033357, exon 5 of 5)	non-coding (NR_033357, exon 5 of 5)	4356	NM_001077620	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
154094	chr22	30956251	30956350	+	0	NA	intron (NM_014941, intron 4 of 26)	intron (NM_014941, intron 4 of 26)	11987	NM_001303257	22880		NM_014941	ENSG00000133422	MORC2	CMT2Z|DIGFAN|ZCW3|ZCWCC1	MORC family CW-type zinc finger 2	protein-coding
140638	chr2	233471101	233471700	+	0	NA	3' UTR (NM_152879, exon 30 of 30)	3' UTR (NM_152879, exon 30 of 30)	18498	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
216308	chr8	12664651	12665900	+	0	NA	intron (NR_047662, intron 1 of 8)	CpG	336	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
128901	chr2	64145571	64146530	+	0	NA	Intergenic	L2a|LINE|L2	-1630	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
114014	chr19	10876401	10876800	+	0	NA	intron (NM_001370089, intron 1 of 14)	intron (NM_001370089, intron 1 of 14)	4171	NM_001370089	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
118954	chr19	38839551	38839650	+	0	NA	intron (NM_001533, intron 8 of 12)	intron (NM_001533, intron 8 of 12)	-7806	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
112885	chr19	7622251	7622680	+	0	NA	intron (NM_020196, intron 11 of 18)	intron (NM_020196, intron 11 of 18)	5026	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
181433	chr5	40830501	40831080	+	0	NA	3' UTR (NM_000997, exon 4 of 4)	3' UTR (NM_000997, exon 4 of 4)	1945	NR_002583	619564		NR_002583	ENSG00000212296	SNORD72	HBII-240	small nucleolar RNA, C/D box 72	snoRNA
89585	chr16	89274001	89275430	+	0	NA	intron (NM_013275, intron 11 of 12)	intron (NM_013275, intron 11 of 12)	-21413	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
16650	chr1	155141771	155141930	+	0	NA	Intergenic	THE1A|LTR|ERVL-MaLR	-1319	NM_153741	54344		NM_018973	ENSG00000179085	DPM3	CDG1O|MDDGB15|MDDGC15	dolichyl-phosphate mannosyltransferase subunit 3, regulatory	protein-coding
238060	chrX	135596501	135596780	+	0	NA	Intergenic	LTR41|LTR|ERVL	-75966	NR_046740	100874118		NR_046740	ENSG00000225235	INTS6L-AS1	DDX26B-AS1	INTS6L antisense RNA 1	ncRNA
232204	chr9	134332351	134332450	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	5945	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
798	chr1	1546971	1547350	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	-6536	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
42492	chr11	70195871	70196650	+	0	NA	Intergenic	Intergenic	-7036	NM_003824	8772		NM_003824	ENSG00000168040	FADD	GIG3|IMD90|MORT1	Fas associated via death domain	protein-coding
64472	chr14	24268701	24268900	+	0	NA	exon (NM_004581, exon 8 of 16).2	exon (NM_004581, exon 8 of 16).2	2827	NM_004581	5875		NM_004581	ENSG00000100949	RABGGTA	PTAR3	Rab geranylgeranyltransferase subunit alpha	protein-coding
146066	chr20	47493201	47494080	+	0	NA	Intergenic	Intergenic	-8247	NM_181659	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
9315	chr1	46530471	46530630	+	0	NA	Intergenic	Intergenic	4965	NM_001357063	105378696		NM_001357063	ENSG00000282881	TMEM275	-	transmembrane protein 275	protein-coding
145801	chr20	45418571	45418900	+	0	NA	intron (NR_047692, intron 2 of 10)	intron (NR_047692, intron 2 of 10)	2594	NR_047695	51604		NM_015937	ENSG00000124155	PIGT	CGI-06|MCAHS3|NDAP|PIG-T|PNH2	phosphatidylinositol glycan anchor biosynthesis class T	protein-coding
25904	chr10	11290351	11290650	+	0	NA	intron (NM_001326330, intron 9 of 12)	AluYj4|SINE|Alu	54174	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70324	chr14	101833601	101833830	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	23852	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
107735	chr18	50218721	50219030	+	0	NA	Intergenic	Intergenic	-23728	NM_001080467	4645		NM_001080467	ENSG00000167306	MYO5B	DIAR2|MVID1|PFIC10	myosin VB	protein-coding
159315	chr3	13011411	13013000	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-25104	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
119395	chr19	40230971	40231130	+	0	NA	3' UTR (NM_001330511, exon 12 of 12)	3' UTR (NM_001330511, exon 12 of 12)	-4361	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
118604	chr19	36688951	36689050	+	0	NA	intron (NM_001322920, intron 1 of 6)	AluSx|SINE|Alu	1388	NM_001322917	163081		NM_152603	ENSG00000189042	ZNF567	-	zinc finger protein 567	protein-coding
128651	chr2	61433671	61434630	+	0	NA	intron (NM_014709, intron 1 of 79)	L1MA5A|LINE|L1	-16773	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
102652	chr17	76065321	76065580	+	0	NA	intron (NM_001260502, intron 2 of 14)	AluJr|SINE|Alu	7067	NM_014230	6730		NM_014230	ENSG00000167881	SRP68	SCN10	signal recognition particle 68	protein-coding
145665	chr20	44969501	44969770	+	0	NA	intron (NR_147974, intron 1 of 3)	intron (NR_147974, intron 1 of 3)	3123	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
136322	chr2	175152221	175152680	+	0	NA	intron (NR_045772, intron 1 of 14)	intron (NR_045772, intron 1 of 14)	15259	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
132007	chr2	100606751	100607180	+	0	NA	intron (NR_146956, intron 1 of 2)	intron (NR_146956, intron 1 of 2)	3226	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
202009	chr6	152625151	152626000	+	0	NA	intron (NM_033071, intron 2 of 145)	intron (NM_033071, intron 2 of 145)	11276	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
11054	chr1	85022721	85023050	+	0	NA	intron (NM_001253693, intron 8 of 11)	L2a|LINE|L2	25615	NM_018298	55283		NM_018298	ENSG00000055732	MCOLN3	TRP-ML3|TRPML3	mucolipin TRP cation channel 3	protein-coding
29536	chr10	70925621	70926030	+	0	NA	Intergenic	Intergenic	-13228	NR_134313	105378349		NR_134313	ENSG00000259267	LINC02622	-	long intergenic non-protein coding RNA 2622	ncRNA
43477	chr11	78200621	78201080	+	0	NA	intron (NM_020798, intron 6 of 10)	intron (NM_020798, intron 6 of 10)	11931	NM_020798	57558		NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
60599	chr13	42039501	42042200	+	0	NA	intron (NM_001204504, intron 1 of 29)	CpG	814	NM_001204504	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
81666	chr16	11051951	11052850	+	0	NA	intron (NM_001243403, intron 17 of 20)	intron (NM_001243403, intron 17 of 20)	107836	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
49797	chr12	31958871	31960900	+	0	NA	intron (NM_018169, intron 1 of 5)	CpG	470	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
212513	chr7	128738301	128740060	+	0	NA	promoter-TSS (NM_001130674)	promoter-TSS (NM_001130674)	-179	NM_001130674	813		NM_001219	ENSG00000128595	CALU	-	calumenin	protein-coding
178755	chr4	153224121	153224380	+	0	NA	intron (NM_001375512, intron 2 of 12)	intron (NM_001375512, intron 2 of 12)	19807	NM_001375512	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
169292	chr3	158569051	158569350	+	0	NA	intron (NR_104147, intron 1 of 4)	MIR|SINE|MIR	1866	NR_104147	100996447		NR_104147	ENSG00000243150	MLF1-DT	-	MLF1 divergent transcript	ncRNA
172424	chr4	1858771	1859150	+	0	NA	Intergenic	Intergenic	-2804	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
57867	chr12	123378001	123378400	+	0	NA	Intergenic	AluSp|SINE|Alu	-5932	NM_001324505	387893		NM_020382	ENSG00000183955	KMT5A	PR-Set7|PR/SET07|SET07|SET8|SETD8	lysine methyltransferase 5A	protein-coding
109638	chr19	997551	997650	+	0	NA	Intergenic	AluSx|SINE|Alu	-2819	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
221278	chr8	122806471	122806630	+	0	NA	intron (NM_014943, intron 1 of 3)	LTR33|LTR|ERVL	24895	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
11542	chr1	91012401	91012800	+	0	NA	intron (NM_032186, intron 1 of 3)	L1ME3|LINE|L1	8908	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
66403	chr14	61504701	61505430	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	65129	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
173113	chr4	6511421	6512250	+	0	NA	intron (NM_001206995, intron 2 of 9)	intron (NM_001206995, intron 2 of 9)	-39221	NM_001363388	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
118703	chr19	38213071	38213330	+	0	NA	intron (NM_001289978, intron 10 of 11)	AluSx1|SINE|Alu	11022	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
237438	chrX	119678301	119679730	+	0	NA	intron (NM_145799, intron 1 of 10)	AluSx1|SINE|Alu	14153	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
12146	chr1	100132521	100133850	+	0	NA	promoter-TSS (NR_135078)	promoter-TSS (NR_135078)	35	NR_135078	54482		NM_019083	ENSG00000122435	TRMT13	CCDC76	tRNA methyltransferase 13 homolog	protein-coding
229327	chr9	120896751	120897680	+	0	NA	Intergenic	Intergenic	-2319	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
115788	chr19	16367001	16368160	+	0	NA	intron (NR_047665, intron 21 of 22)	intron (NR_047665, intron 21 of 22)	42754	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
67206	chr14	68931801	68932000	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	47402	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
130286	chr2	84891071	84892130	+	0	NA	Intergenic	Intergenic	-10516	NM_001307978	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
229243	chr9	115002471	115002630	+	0	NA	Intergenic	Intergenic	-71955	NM_001252290	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
214217	chr7	148727551	148728050	+	0	NA	intron (NM_001370664, intron 1 of 21)	L2|LINE|L2	28090	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
98894	chr17	48583021	48584080	+	0	NA	intron (NM_001384749, intron 1 of 4)	intron (NM_001384749, intron 1 of 4)	-1171	NM_001330322	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
45645	chr11	118999651	119000080	+	0	NA	intron (NR_104050, intron 3 of 10).2	AluY|SINE|Alu	1727	NR_104050	338657		NM_198489	ENSG00000186166	CENATAC	CCDC84|DLNB14|MVA4	centrosomal AT-AC splicing factor	protein-coding
58800	chr12	132773451	132774150	+	0	NA	intron (NM_005895, intron 23 of 23)	intron (NM_005895, intron 23 of 23)	-11968	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
223784	chr8	144675151	144676200	+	0	NA	intron (NM_001308208, intron 1 of 10)	LTR12D|LTR|ERV1	10171	NM_001308208	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
200005	chr6	128883151	128883450	+	0	NA	exon (NM_001079823, exon 1 of 64)	exon (NM_001079823, exon 1 of 64)	162	NM_001079823	3908		NM_000426	ENSG00000196569	LAMA2	LAMM|MDC1A	laminin subunit alpha 2	protein-coding
202303	chr6	157228801	157229380	+	0	NA	Intergenic	Intergenic	94429	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
83556	chr16	28091121	28091450	+	0	NA	Intergenic	MIRb|SINE|MIR	-27571	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
87754	chr16	75247171	75247330	+	0	NA	intron (NM_001170715, intron 1 of 6)	intron (NM_001170715, intron 1 of 6)	901	NM_001170719	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
69428	chr14	94078271	94079180	+	0	NA	intron (NM_020414, intron 2 of 8).2	MIRb|SINE|MIR	2477	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
70968	chr14	104696921	104697980	+	0	NA	intron (NM_032714, intron 1 of 4)	intron (NM_032714, intron 1 of 4)	7832	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
88021	chr16	81038251	81038550	+	0	NA	intron (NM_001300728, intron 1 of 3)	AluSz|SINE|Alu	1202	NM_001300728	23300		NM_015251	ENSG00000166454	ATMIN	ASCIZ|ZNF822	ATM interactor	protein-coding
58461	chr12	132115551	132115850	+	0	NA	intron (NR_003290, intron 5 of 9)	MIR|SINE|MIR	28619	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
54230	chr12	80186601	80187050	+	0	NA	intron (NM_001368062, intron 5 of 62)	intron (NM_001368062, intron 5 of 62)	-22389	NM_173591	283310		NM_173591	ENSG00000165899	OTOGL	C12orf64|DFNB84B	otogelin like	protein-coding
2266	chr1	8923051	8923800	+	0	NA	Intergenic	HERVFH21-int|LTR|ERV1	-22443	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
229570	chr9	123267811	123269550	+	0	NA	promoter-TSS (NM_001376109)	promoter-TSS (NM_001376109)	-94	NM_018387	55342		NM_018387	ENSG00000165209	STRBP	HEL162|ILF3L|SPNR|p74	spermatid perinuclear RNA binding protein	protein-coding
71573	chr14	106421451	106422080	+	0	NA	Intergenic	Intergenic	-60674	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
120148	chr19	42227001	42227400	+	0	NA	3' UTR (NM_001314033, exon 3 of 3)	3' UTR (NM_001314033, exon 3 of 3)	6888	NM_001314033	116115		NM_133444	ENSG00000167625	ZNF526	DENNED	zinc finger protein 526	protein-coding
226773	chr9	76516371	76516680	+	0	NA	Intergenic	Intergenic	15892	NM_001097636	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
84413	chr16	30353451	30353930	+	0	NA	exon (NM_001243646, exon 4 of 6)	exon (NM_001243646, exon 4 of 6)	1244	NM_001243646	10421		NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
46259	chr11	124752651	124753500	+	0	NA	promoter-TSS (NM_001329920)	promoter-TSS (NM_001329920)	-820	NM_014312	23584		NM_014312	ENSG00000019102	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
169127	chr3	155862171	155863130	+	0	NA	Intergenic	LTR8|LTR|ERV1	-8000	NM_003875	8833		NM_003875	ENSG00000163655	GMPS	GATD7	guanine monophosphate synthase	protein-coding
59852	chr13	30525221	30525500	+	0	NA	intron (NM_001370340, intron 1 of 4)	intron (NM_001370340, intron 1 of 4)	-59383	NM_001363661	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
38436	chr11	45149071	45149680	+	0	NA	intron (NM_001256695, intron 1 of 7)	L2a|LINE|L2	2032	NM_001256696	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
214030	chr7	143289771	143289930	+	0	NA	intron (NM_001224, intron 1 of 11)	intron (NM_001224, intron 1 of 11)	262	NM_001224	835		NM_001224	ENSG00000106144	CASP2	CASP-2|ICH1|MRT80|NEDD-2|NEDD2|PPP1R57	caspase 2	protein-coding
6707	chr1	29229651	29229750	+	0	NA	intron (NM_001349713, intron 1 of 11)	MIRb|SINE|MIR	1234	NR_146214	51102		NM_016011	ENSG00000116353	MECR	CGI-63|DYTOABG|ETR1|FASN2B|NRBF1|OPA16	mitochondrial trans-2-enoyl-CoA reductase	protein-coding
104531	chr17	81248551	81248930	+	0	NA	intron (NM_001037984, intron 14 of 15)	intron (NM_001037984, intron 14 of 15)	8826	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
236923	chrX	93672851	93674010	+	0	NA	promoter-TSS (NM_001171111)	promoter-TSS (NM_001171111)	148	NM_004538	4675		NM_004538	ENSG00000186310	NAP1L3	MB20|NPL3	nucleosome assembly protein 1 like 3	protein-coding
65804	chr14	54757351	54757650	+	0	NA	intron (NM_001161577, intron 1 of 8)	intron (NM_001161577, intron 1 of 8)	2667	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
128378	chr2	55026171	55026530	+	0	NA	exon (NM_001321862, exon 3 of 9)	exon (NM_001321862, exon 3 of 9)	-16078	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
216971	chr8	23062251	23062550	+	0	NA	intron (NM_147187, intron 1 of 9)	AluJr|SINE|Alu	-5829	NR_038873	286059		NR_038873	ENSG00000246130	TNFRSF10B-AS1	DR5-AS	TNFRSF10B antisense RNA 1	pseudo
104816	chr17	81808001	81808280	+	0	NA	intron (NM_000160, intron 1 of 13)	intron (NM_000160, intron 1 of 13)	3990	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
133578	chr2	121600171	121600680	+	0	NA	intron (NM_001142274, intron 2 of 37)	MIR3|SINE|MIR	49037	NM_001378005	23332		NM_015282	ENSG00000074054	CLASP1	MAST1	cytoplasmic linker associated protein 1	protein-coding
91210	chr17	3920451	3920550	+	0	NA	Intergenic	Intergenic	-4035	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
203762	chr7	1183001	1183650	+	0	NA	Intergenic	AluJo|SINE|Alu	22540	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
121937	chr19	48457701	48458100	+	0	NA	TTS (NM_031485)	TTS (NM_031485)	2326	NM_013348	3770		NM_013348	ENSG00000182324	KCNJ14	IRK4|KIR2.4	potassium inwardly rectifying channel subfamily J member 14	protein-coding
223683	chr8	144411271	144411430	+	0	NA	Intergenic	AluSx|SINE|Alu	-2015	NM_013291	29894		NM_013291	ENSG00000071894	CPSF1	CPSF160|HSU37012|MYP27|P/cl.18	cleavage and polyadenylation specific factor 1	protein-coding
206518	chr7	34320971	34321280	+	0	NA	Intergenic	Intergenic	-337093	NM_207172	387129		NM_207172	ENSG00000187258	NPSR1	ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
220998	chr8	115653771	115653930	+	0	NA	intron (NM_001282903, intron 1 of 6)	(CCT)n|Simple_repeat|Simple_repeat	14163	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
110889	chr19	2698801	2699950	+	0	NA	intron (NM_052847, intron 1 of 4)	AluSz|SINE|Alu	3319	NM_052847	2788		NM_052847	ENSG00000176533	GNG7	HG3B	G protein subunit gamma 7	protein-coding
37872	chr11	33867871	33868230	+	0	NA	intron (NM_005574, intron 4 of 5)	intron (NM_005574, intron 4 of 5)	1828	NM_001142315	4005		NM_005574	ENSG00000135363	LMO2	LMO-2|RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
224350	chr9	6900651	6900950	+	0	NA	intron (NR_148677, intron 8 of 21)	intron (NR_148677, intron 8 of 21)	142827	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
74068	chr15	52568221	52569390	+	0	NA	promoter-TSS (NM_001330309)	promoter-TSS (NM_001330309)	27	NM_001330309	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
107869	chr18	55234671	55234850	+	0	NA	intron (NM_001369569, intron 15 of 19)	intron (NM_001369569, intron 15 of 19)	67900	NM_001348216	6925		NM_003199	ENSG00000196628	TCF4	CDG2T|E2-2|FCD2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
24395	chr1	243099871	243100230	+	0	NA	intron (NR_029401, intron 1 of 17)	intron (NR_029401, intron 1 of 17)	1694	NR_029401	731275		NR_029401	ENSG00000291217	LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
237867	chrX	130267471	130267700	+	0	NA	intron (NM_017666, intron 1 of 18)	MIRc|SINE|MIR	1314	NM_017666	55609		NM_017666	ENSG00000056277	ZNF280C	SUHW3|ZNF633|ZPET	zinc finger protein 280C	protein-coding
22089	chr1	211513771	211514480	+	0	NA	Intergenic	Intergenic	-21963	NM_183059	343035		NM_183059	ENSG00000198570	RD3	C1orf36|LCA12	RD3 regulator of GUCY2D	protein-coding
6648	chr1	28964971	28965600	+	0	NA	intron (NM_001376013, intron 1 of 20)	intron (NM_001376013, intron 1 of 20)	50709	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
114387	chr19	12555521	12555780	+	0	NA	Intergenic	CpG	-4168	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
146098	chr20	47670571	47670750	+	0	NA	intron (NM_198596, intron 11 of 20)	L1MB3|LINE|L1	115404	NM_018837	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
173736	chr4	16082301	16083080	+	0	NA	intron (NM_006017, intron 1 of 27)	CpG	646	NM_001371407	8842		NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding
230316	chr9	127963951	127964450	+	0	NA	intron (NM_001035254, intron 1 of 10)	MIRb|SINE|MIR	-13486	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
226674	chr9	75071651	75072030	+	0	NA	intron (NM_001127603, intron 4 of 7)	L1MDa|LINE|L1	16315	NM_001127603	54981		NM_017881	ENSG00000106733	NMRK1	C9orf95|NRK1|bA235O14.2	nicotinamide riboside kinase 1	protein-coding
193305	chr6	30097801	30098700	+	0	NA	Intergenic	Intergenic	-6990	NR_126470	104533120		NR_126470	ENSG00000231226	TRIM31-AS1	-	TRIM31 antisense RNA 1	ncRNA
174256	chr4	38035171	38035750	+	0	NA	intron (NM_015173, intron 7 of 19)	intron (NM_015173, intron 7 of 19)	-74721	NM_001253913	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
14537	chr1	144862021	144862280	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	143979	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
24360	chr1	241356851	241357150	+	0	NA	promoter-TSS (NM_001374807)	promoter-TSS (NM_001374807)	-42	NM_001374807	6000		NM_002924	ENSG00000182901	RGS7	-	regulator of G protein signaling 7	protein-coding
189950	chr5	177409521	177410380	+	0	NA	promoter-TSS (NM_000505)	promoter-TSS (NM_000505)	-386	NM_000505	2161		NM_000505	ENSG00000131187	F12	HAE3|HAEX|HAF	coagulation factor XII	protein-coding
217136	chr8	25410951	25411050	+	0	NA	intron (NM_024940, intron 51 of 51)	(CGCA)n|Simple_repeat|Simple_repeat	13261	NM_001083111	2796		NM_000825	ENSG00000147437	GNRH1	GNRH|GRH|LHRH|LNRH	gonadotropin releasing hormone 1	protein-coding
33928	chr10	124607651	124607750	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-96328	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
117630	chr19	23392371	23392950	+	0	NA	intron (NM_003430, intron 1 of 3)	AluSg|SINE|Alu	2811	NM_003430	7644		NM_003430	ENSG00000167232	ZNF91	HPF7|HTF10	zinc finger protein 91	protein-coding
237361	chrX	118825621	118825880	+	0	NA	exon (NM_001312891, exon 3 of 3)	exon (NM_001312891, exon 3 of 3)	1926	NM_173798	170261		NM_173798	ENSG00000174460	ZCCHC12	PNMA7A|SIZN|SIZN1	zinc finger CCHC-type containing 12	protein-coding
53500	chr12	66307701	66308300	+	0	NA	intron (NM_033647, intron 3 of 13)	AluSz|SINE|Alu	5455	NR_135080	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
67881	chr14	74300601	74301250	+	0	NA	intron (NR_148466, intron 1 of 16)	AluSq2|SINE|Alu	2009	NM_020324	5826		NM_005050	ENSG00000119688	ABCD4	ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L	ATP binding cassette subfamily D member 4	protein-coding
88856	chr16	87661521	87661880	+	0	NA	intron (NM_020655, intron 2 of 4)	intron (NM_020655, intron 2 of 4)	59192	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
20717	chr1	200866521	200867580	+	0	NA	Intergenic	Intergenic	-5931	NM_005298	2848		NM_005298	ENSG00000170128	GPR25	-	G protein-coupled receptor 25	protein-coding
30606	chr10	80189721	80190330	+	0	NA	intron (NM_001278408, intron 1 of 16)	L1MB3|LINE|L1	14466	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
5813	chr1	26601751	26601850	+	0	NA	Intergenic	AluJr|SINE|Alu	47258	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
215097	chr7	155204071	155204230	+	0	NA	Intergenic	Intergenic	-93622	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
189600	chr5	175701071	175701230	+	0	NA	intron (NR_160284, intron 3 of 3)	MIRb|SINE|MIR	43079	NM_001367711	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
131598	chr2	96870601	96871580	+	0	NA	Intergenic	Intergenic	-1010	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
226120	chr9	62914651	62914750	+	0	NA	Intergenic	Intergenic	-16613	NR_122076	403323		NM_203449		LERFS	-	lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting	ncRNA
75456	chr15	65843971	65844130	+	0	NA	Intergenic	AluJb|SINE|Alu	-25441	NM_004663	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
230537	chr9	128370651	128372300	+	0	NA	intron (NM_001135947, intron 1 of 3)	CpG	101	NR_049743	81605		NM_030914	ENSG00000167118	URM1	C9orf74	ubiquitin related modifier 1	protein-coding
100539	chr17	62509021	62509280	+	0	NA	intron (NM_001375273, intron 3 of 21)	AluJo|SINE|Alu	28037	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
126626	chr2	28806121	28806530	+	0	NA	Intergenic	Intergenic	-4509	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
163519	chr3	51456251	51456550	+	0	NA	intron (NR_146065, intron 5 of 25)	L1PA4|LINE|L1	43602	NM_001171904	9730		NM_014703	ENSG00000145041	DCAF1	RIP|VPRBP	DDB1 and CUL4 associated factor 1	protein-coding
60825	chr13	45390951	45391270	+	0	NA	non-coding (NR_024458, exon 11 of 11)	non-coding (NR_024458, exon 11 of 11)	-27052	NR_047031	100874259		NR_047031	ENSG00000251015	SLC25A30-AS1	-	SLC25A30 antisense RNA 1	ncRNA
114881	chr19	13884401	13885080	+	0	NA	intron (NM_001345846, intron 6 of 7)	intron (NM_001345846, intron 6 of 7)	7491	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
197473	chr6	75297051	75297430	+	0	NA	intron (NM_001300866, intron 6 of 6)	intron (NM_001300866, intron 6 of 6)	12226	NR_040081	100506804		NR_040081	ENSG00000225793	TMEM30A-DT	-	TMEM30A divergent transcript	ncRNA
47571	chr12	4414971	4415330	+	0	NA	Intergenic	Intergenic	30464	NM_020996	2251		NM_020996	ENSG00000111241	FGF6	HBGF-6|HST2	fibroblast growth factor 6	protein-coding
74994	chr15	63937551	63937850	+	0	NA	intron (NM_014326, intron 5 of 11)	intron (NM_014326, intron 5 of 11)	9426	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
166577	chr3	118817701	118817930	+	0	NA	Intergenic	Intergenic	-6982	NR_135547	105374060		NR_135547		LOC105374060	-	uncharacterized LOC105374060	ncRNA
67188	chr14	68842971	68843130	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-46807	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
133986	chr2	130826271	130826630	+	0	NA	Intergenic	Intergenic	-10464	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
170182	chr3	183695771	183696330	+	0	NA	Intergenic	Intergenic	-1747	NM_001351371	55689		NM_018023	ENSG00000163872	YEATS2	FAME4	YEATS domain containing 2	protein-coding
124423	chr19	58465421	58465730	+	0	NA	Intergenic	AluJr|SINE|Alu	-1505	NM_014347	25799		NM_014347	ENSG00000083812	ZNF324	ZF5128|ZNF324A	zinc finger protein 324	protein-coding
87274	chr16	70012571	70012930	+	0	NA	intron (NR_003610, intron 14 of 25)	L2b|LINE|L2	-17596	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
196024	chr6	42028301	42029000	+	0	NA	intron (NM_001136017, intron 1 of 4)	MIRb|SINE|MIR	20244	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
17229	chr1	156286251	156286350	+	0	NA	non-coding (NR_026678, exon 3 of 4)	non-coding (NR_026678, exon 3 of 4)	1975	NM_032323	84283		NM_032323	ENSG00000163472	TMEM79	MATT	transmembrane protein 79	protein-coding
198748	chr6	108567171	108567530	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	6433	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
125025	chr2	9581721	9582130	+	0	NA	Intergenic	AluSz|SINE|Alu	-26095	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
48193	chr12	8036471	8036630	+	0	NA	intron (NM_018416, intron 1 of 10)	intron (NM_018416, intron 1 of 10)	3834	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
52394	chr12	55731501	55731700	+	0	NA	Intergenic	AluSc|SINE|Alu	-1927	NM_001257389	967		NM_001780	ENSG00000135404	CD63	AD1|HOP-26|ME491|MLA1|OMA81H|Pltgp40|TSPAN30	CD63 molecule	protein-coding
111065	chr19	3141921	3142430	+	0	NA	non-coding (NR_110670, exon 4 of 4)	non-coding (NR_110670, exon 4 of 4)	6142	NM_002068	2769		NM_002068	ENSG00000060558	GNA15	GNA16|HG1L	G protein subunit alpha 15	protein-coding
193667	chr6	30954821	30956200	+	0	NA	promoter-TSS (NR_138040)	promoter-TSS (NR_138040)	-648	NR_138040	102723346		NR_138040		HCG21	NCRNA00150	HLA complex group 21	ncRNA
13207	chr1	112638321	112638980	+	0	NA	intron (NM_006135, intron 1 of 9)	intron (NM_006135, intron 1 of 9)	18818	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
191856	chr6	15257301	15258350	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	8970	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
67723	chr14	73490301	73492180	+	0	NA	exon (NM_024644, exon 1 of 1)	exon (NM_024644, exon 1 of 1)	307	NM_024644	79697		NM_024644	ENSG00000170468	RIOX1	C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66	ribosomal oxygenase 1	protein-coding
232810	chr9	136717201	136717800	+	0	NA	intron (NM_152421, intron 1 of 4)	intron (NM_152421, intron 1 of 4)	4928	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
223266	chr8	143717701	143717900	+	0	NA	intron (NM_139021, intron 2 of 13)	intron (NM_139021, intron 2 of 13)	1451	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
73140	chr15	41382671	41382830	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	19746	NR_045620	51103		NM_016013	ENSG00000137806	NDUFAF1	CGI-65|CGI65|CIA30|MC1DN11	NADH:ubiquinone oxidoreductase complex assembly factor 1	protein-coding
46779	chr11	129998651	129998750	+	0	NA	intron (NM_199437, intron 1 of 20)	intron (NM_199437, intron 1 of 20)	-3924	NR_024233	440072		NM_001007543		PRDM10-DT	C11orf37|LINC00167|NCRNA00167	PRDM10 divergent transcript	ncRNA
144708	chr20	36493021	36493530	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	31480	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
94683	chr17	30599921	30601230	+	0	NA	intron (NR_015341, intron 2 of 8)	CpG	-23743	NR_033420	6459		NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2	pseudo
149539	chr21	33026471	33026630	+	0	NA	intron (NM_005806, intron 1 of 1)	CpG-18347	615	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
96055	chr17	39476651	39477480	+	0	NA	intron (NM_016507, intron 2 of 13)	AluSx3|SINE|Alu	15579	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
173360	chr4	7854521	7855780	+	0	NA	intron (NM_001371091, intron 5 of 17)	intron (NM_001371091, intron 5 of 17)	17158	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
69646	chr14	97798201	97798600	+	0	NA	Intergenic	Intergenic	-35569	NR_146447	100132612		NR_146447	ENSG00000258869	LINC02312	-	long intergenic non-protein coding RNA 2312	ncRNA
186504	chr5	138340471	138340830	+	0	NA	intron (NM_001350194, intron 1 of 4)	intron (NM_001350194, intron 1 of 4)	-2295	NM_001364026	995		NM_001790	ENSG00000158402	CDC25C	CDC25|PPP1R60	cell division cycle 25C	protein-coding
105410	chr17	82780971	82781130	+	0	NA	intron (NM_005993, intron 6 of 38)	intron (NM_005993, intron 6 of 38)	28985	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
115294	chr19	14571451	14572430	+	0	NA	exon (NM_004146, exon 1 of 3)	exon (NM_004146, exon 1 of 3)	126	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
155214	chr22	37863171	37864000	+	0	NA	intron (NM_016091, intron 7 of 12)	intron (NM_016091, intron 7 of 12)	14166	NM_016091	51386		NM_016091	ENSG00000100129	EIF3L	EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005	eukaryotic translation initiation factor 3 subunit L	protein-coding
70094	chr14	100195571	100195930	+	0	NA	Intergenic	Intergenic	-36105	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
132834	chr2	110668921	110669180	+	0	NA	intron (NM_004336, intron 6 of 24)	intron (NM_004336, intron 6 of 24)	9013	NM_004336	699		NM_004336	ENSG00000169679	BUB1	BUB1A|BUB1L|MCPH30|hBUB1	BUB1 mitotic checkpoint serine/threonine kinase	protein-coding
220612	chr8	100922251	100923230	+	0	NA	intron (NM_001135702, intron 5 of 5)	intron (NM_001135702, intron 5 of 5)	27831	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
217713	chr8	30153771	30154130	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-2419	NM_006571	10671		NM_006571	ENSG00000104671	DCTN6	WS-3|WS3|p27	dynactin subunit 6	protein-coding
975	chr1	1807521	1807780	+	0	NA	intron (NM_001282538, intron 3 of 9)	intron (NM_001282538, intron 3 of 9)	-27619	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
24025	chr1	235272371	235272530	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-54766	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
223298	chr8	143792821	143793350	+	0	NA	intron (NM_182706, intron 28 of 36).2	intron (NM_182706, intron 28 of 36).2	19957	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
156704	chr22	41690271	41691800	+	0	NA	intron (NR_160905, intron 2 of 3)	L2a|LINE|L2	2098	NR_160905	79640		NM_024588	ENSG00000293428	C22orf46P	C22orf46	CTA-216E10.6	pseudo
77832	chr15	88641451	88642000	+	0	NA	intron (NM_001303237, intron 2 of 3)	AluSz|SINE|Alu	2709	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
205434	chr7	16926271	16926430	+	0	NA	Intergenic	Intergenic	-44367	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
154406	chr22	35319951	35320250	+	0	NA	intron (NR_156428, intron 2 of 13)	intron (NR_156428, intron 2 of 13)	-15540	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
130764	chr2	86823801	86824280	+	0	NA	intron (NM_172101, intron 5 of 6)	intron (NM_172101, intron 5 of 6)	-15644	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
33364	chr10	117241071	117241730	+	0	NA	intron (NM_003054, intron 1 of 15)	CpG	286	NM_003054	6571		NM_003054	ENSG00000165646	SLC18A2	PKDYS2|SVAT|SVMT|VAT2|VMAT2	solute carrier family 18 member A2	protein-coding
4265	chr1	19653201	19654230	+	0	NA	intron (NM_001278166, intron 1 of 3)	intron (NM_001278166, intron 1 of 3)	6105	NM_001278166	4681		NM_005380	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	NBL1, DAN family BMP antagonist	protein-coding
92300	chr17	8113251	8113350	+	0	NA	intron (NM_021628, intron 6 of 15)	L2c|LINE|L2	5003	NM_001369446	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
184927	chr5	112946101	112946500	+	0	NA	Intergenic	L1MA2|LINE|L1	-24073	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
196942	chr6	52576551	52577750	+	0	NA	promoter-TSS (NR_103446)	promoter-TSS (NR_103446)	-52	NR_103446	401264		NR_103446	ENSG00000225791	TRAM2-AS1	-	TRAM2 antisense RNA 1 (head to head)	ncRNA
50746	chr12	48995201	48995980	+	0	NA	3' UTR (NM_015086, exon 2 of 2)	3' UTR (NM_015086, exon 2 of 2)	-2757	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
26269	chr10	14759271	14759630	+	0	NA	intron (NM_001282695, intron 1 of 5)	L2c|LINE|L2	15447	NM_001282695	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
134152	chr2	134217751	134218380	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-36007	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
229821	chr9	125704971	125705130	+	0	NA	intron (NM_024117, intron 1 of 10)	intron (NM_024117, intron 1 of 10)	2158	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
51048	chr12	49791651	49791950	+	0	NA	3' UTR (NM_001368048, exon 14 of 14)	3' UTR (NM_001368048, exon 14 of 14)	36613	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
27792	chr10	35474171	35474450	+	0	NA	intron (NM_001282853, intron 2 of 10)	L1PA3|LINE|L1	-131031	NM_153368	219770		NM_153368	ENSG00000177291	GJD4	CX40.1	gap junction protein delta 4	protein-coding
167056	chr3	126912871	126913030	+	0	NA	intron (NM_032343, intron 5 of 7)	intron (NM_032343, intron 5 of 7)	-75644	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
101187	chr17	65231721	65232200	+	0	NA	Intergenic	Intergenic	94590	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
231189	chr9	129918721	129919450	+	0	NA	intron (NM_001363755, intron 10 of 15)	intron (NM_001363755, intron 10 of 15)	49480	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
64734	chr14	34542071	34542230	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-2413	NM_001318916	55837		NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding
78476	chr15	92901401	92902030	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	1391	NM_001042572	1106		NM_001271	ENSG00000173575	CHD2	DEE94|EEOC	chromodomain helicase DNA binding protein 2	protein-coding
32505	chr10	102750951	102751450	+	0	NA	intron (NM_001083913, intron 1 of 3)	AluSx|SINE|Alu	7252	NM_001083913	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
219483	chr8	73757051	73757550	+	0	NA	Intergenic	Intergenic	-9592	NM_001164384	27067		NM_014393	ENSG00000040341	STAU2	39K2|39K3	staufen double-stranded RNA binding protein 2	protein-coding
156603	chr22	41542771	41543280	+	0	NA	intron (NM_138338, intron 2 of 6)	AluSq2|SINE|Alu	1445	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
95913	chr17	38907171	38907330	+	0	NA	intron (NM_006148, intron 4 of 6)	intron (NM_006148, intron 4 of 6)	-7729	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
168969	chr3	152390451	152390950	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-49710	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
186165	chr5	134187971	134188700	+	0	NA	Intergenic	Intergenic	-11302	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
217614	chr8	29989971	29990500	+	0	NA	Intergenic	AluJb|SINE|Alu	-32887	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
47620	chr12	6075101	6075730	+	0	NA	exon (NM_000552, exon 7 of 52)	exon (NM_000552, exon 7 of 52)	-35232	NR_145989	109729112		NR_145989		SNORA120	-	small nucleolar RNA, H/ACA box 120	snoRNA
183041	chr5	73303521	73303780	+	0	NA	Intergenic	CpG	-34256	NR_146627	105379033		NR_146627		LINC02230	-	long intergenic non-protein coding RNA 2230	ncRNA
20925	chr1	202195201	202195600	+	0	NA	intron (NM_001017403, intron 1 of 17)	intron (NM_001017403, intron 1 of 17)	1410	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
75305	chr15	65284471	65284830	+	0	NA	TTS (NR_145768)	TTS (NR_145768)	941	NR_145768	109617003		NR_145768	ENSG00000206903	SNORA24B	-	small nucleolar RNA, H/ACA box 24B	snoRNA
31533	chr10	96864201	96864600	+	0	NA	intron (NM_032440, intron 2 of 7)	intron (NM_032440, intron 2 of 7)	31455	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
34481	chr10	132514951	132515250	+	0	NA	intron (NR_158224, intron 2 of 3)	intron (NR_158224, intron 2 of 3)	21823	NR_158224	107984282		NR_158224		LOC107984282	-	uncharacterized LOC107984282	ncRNA
145307	chr20	41052251	41052350	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	23478	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
56339	chr12	112939721	112940330	+	0	NA	intron (NM_006187, intron 1 of 15)	intron (NM_006187, intron 1 of 15)	1551	NM_006187	4940		NM_006187	ENSG00000111331	OAS3	p100|p100OAS	2'-5'-oligoadenylate synthetase 3	protein-coding
156953	chr22	42346221	42346480	+	0	NA	Intergenic	MIR|SINE|MIR	22858	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
108117	chr18	62300471	62300630	+	0	NA	intron (NR_144408, intron 32 of 32)	intron (NR_144408, intron 32 of 32)	-24737	NM_001270949	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
238119	chrX	136651701	136651900	+	0	NA	intron (NM_000074, intron 2 of 4)	MIR3|SINE|MIR	3642	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
9460	chr1	50426771	50427130	+	0	NA	Intergenic	CpG	-3507	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
68487	chr14	88009401	88009630	+	0	NA	intron (NM_003608, intron 1 of 1)	intron (NM_003608, intron 1 of 1)	4380	NM_003608	8477		NM_003608	ENSG00000140030	GPR65	TDAG8|hTDAG8	G protein-coupled receptor 65	protein-coding
102535	chr17	75824101	75824700	+	0	NA	exon (NM_001080419, exon 16 of 16)	exon (NM_001080419, exon 16 of 16)	20004	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
139290	chr2	219512871	219513580	+	0	NA	Intergenic	Intergenic	-1257	NM_182847	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
76162	chr15	72786801	72787200	+	0	NA	intron (NR_040107, intron 1 of 2)	intron (NR_040107, intron 1 of 2)	-3242	NM_001365225	83440		NM_031284	ENSG00000159322	ADPGK	2610017G09Rik|ADP-GK	ADP dependent glucokinase	protein-coding
88391	chr16	84617301	84619080	+	0	NA	promoter-TSS (NM_021149)	promoter-TSS (NM_021149)	-112	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
131566	chr2	96808571	96809130	+	0	NA	intron (NM_020184, intron 6 of 6)	AluJo|SINE|Alu	4807	NR_149141	100506036		NR_149141	ENSG00000273265	CNNM3-DT	-	CNNM3 divergent transcript	ncRNA
227911	chr9	94171051	94171730	+	0	NA	Intergenic	Intergenic	-4567	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
27981	chr10	42932551	42933230	+	0	NA	Intergenic	CpG	48617	NR_126352	104266963		NR_126352	ENSG00000229630	LINC01264	-	long intergenic non-protein coding RNA 1264	ncRNA
93594	chr17	19129521	19130030	+	0	NA	intron (NM_001129778, intron 1 of 3)	L2a|LINE|L2	2186	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
44350	chr11	102432771	102433130	+	0	NA	intron (NM_052932, intron 2 of 4)	THE1-int|LTR|ERVL-MaLR	19815	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
97796	chr17	44770521	44770780	+	0	NA	intron (NM_001318933, intron 4 of 26)	intron (NM_001318933, intron 4 of 26)	11662	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
130663	chr2	86200571	86200950	+	0	NA	intron (NM_145644, intron 1 of 4)	AluSp|SINE|Alu	1303	NM_016622	51318		NM_016622	ENSG00000132313	MRPL35	L35mt|MRP-L35|bL35m	mitochondrial ribosomal protein L35	protein-coding
84849	chr16	31132121	31133450	+	0	NA	exon (NM_002773, exon 4 of 6)	exon (NM_002773, exon 4 of 6)	2942	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
166320	chr3	112773551	112774580	+	0	NA	Intergenic	Intergenic	-24746	NR_110017	101929694		NR_110017	ENSG00000240893	LINC02042	-	long intergenic non-protein coding RNA 2042	ncRNA
85876	chr16	57048521	57049250	+	0	NA	TTS (NM_001384973)	TTS (NM_001384973)	-43698	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
179070	chr4	166143271	166143430	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	270113	NM_012464	7092		NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding
115972	chr19	17004651	17005330	+	0	NA	intron (NM_015692, intron 7 of 41)	GA-rich|Low_complexity|Low_complexity	21820	NR_165644	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
178636	chr4	152273151	152273250	+	0	NA	Intergenic	AluY|SINE|Alu	-64474	NR_104273	102191832		NR_104273	ENSG00000270751	FBXW7-AS1	DEAR|DEspR	FBXW7 antisense RNA 1	ncRNA
50054	chr12	44648901	44649100	+	0	NA	intron (NM_001145108, intron 13 of 19)	AluSx|SINE|Alu	226661	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
35042	chr11	580921	581580	+	0	NA	intron (NM_001286582, intron 1 of 17)	intron (NM_001286582, intron 1 of 17)	4780	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
199794	chr6	127118471	127119230	+	0	NA	5' UTR (NM_032784, exon 1 of 5)	5' UTR (NM_032784, exon 1 of 5)	179	NM_032784	84870		NM_032784	ENSG00000146374	RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
78115	chr15	90307671	90308030	+	0	NA	Intergenic	Intergenic	41597	NR_028287	23766		NM_032568		GABARAPL3	ATG8D	GABA type A receptor associated protein like 3 (pseudogene)	pseudo
6584	chr1	28758571	28758930	+	0	NA	intron (NM_016258, intron 4 of 4)	MIR3|SINE|MIR	21810	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
151141	chr21	44905751	44906050	+	0	NA	intron (NM_001127491, intron 4 of 15)	intron (NM_001127491, intron 4 of 15)	14999	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
24870	chr10	846151	846450	+	0	NA	intron (NM_001351277, intron 5 of 17)	L2b|LINE|L2	85405	NM_001351277	23185		NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	La ribonucleoprotein 4B	protein-coding
58785	chr12	132753871	132754030	+	0	NA	intron (NM_015114, intron 2 of 12)	AluJb|SINE|Alu	7882	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
20209	chr1	193125351	193125980	+	0	NA	intron (NM_024529, intron 2 of 16)	AluJb|SINE|Alu	3634	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
163471	chr3	50626201	50626600	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	9249	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
212964	chr7	130961001	130963500	+	0	NA	intron (NR_109852, intron 4 of 5)	MER61B|LTR|ERV1	48786	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
221713	chr8	127206551	127207400	+	0	NA	TTS (NR_108049)	TTS (NR_108049)	-9348	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
132050	chr2	101125551	101125880	+	0	NA	intron (NM_001330348, intron 1 of 19)	intron (NM_001330348, intron 1 of 19)	25667	NM_001330348	11138		NM_007063	ENSG00000204634	TBC1D8	AD3|GRAMD8|HBLP1|TBC1D8A|VRP	TBC1 domain family member 8	protein-coding
237848	chrX	130108701	130109520	+	0	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	1387	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
213352	chr7	135571001	135571200	+	0	NA	intron (NM_001329434, intron 1 of 42)	intron (NM_001329434, intron 1 of 42)	13183	NM_015135	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
50542	chr12	47942351	47943030	+	0	NA	Intergenic	Intergenic	-20857	NM_024056	79022		NM_024056	ENSG00000134291	TMEM106C	-	transmembrane protein 106C	protein-coding
23794	chr1	234214071	234214700	+	0	NA	5' UTR (NM_001300845, exon 1 of 7)	5' UTR (NM_001300845, exon 1 of 7)	174	NM_001300845	148641		NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
27596	chr10	32459101	32459980	+	0	NA	intron (NR_109826, intron 4 of 16)	L1MB4|LINE|L1	13400	NR_109827	79741		NM_024688	ENSG00000216937	CCDC7	BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68	coiled-coil domain containing 7	protein-coding
35554	chr11	1640021	1640580	+	0	NA	Intergenic	Intergenic	10497	NM_001001480	439915		NM_001001480	ENSG00000185940	KRTAP5-5	KRTAP5-11|KRTAP5.5	keratin associated protein 5-5	protein-coding
14251	chr1	143249651	143250350	+	0	NA	Intergenic	Intergenic	172592	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
141140	chr2	239216671	239217130	+	0	NA	intron (NM_006037, intron 3 of 26)	intron (NM_006037, intron 3 of 26)	-21443	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
184174	chr5	95811121	95811630	+	0	NA	Intergenic	LTR5B|LTR|ERVK	11351	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
228783	chr9	111599451	111600100	+	0	NA	promoter-TSS (NM_012212)	promoter-TSS (NM_012212)	80	NM_001146109	22949		NM_012212	ENSG00000106853	PTGR1	DIG-1|LTB4DH|PGR1|ZADH3	prostaglandin reductase 1	protein-coding
37362	chr11	15114601	15115000	+	0	NA	promoter-TSS (NM_001042536)	promoter-TSS (NM_001042536)	-123	NM_001042536	387755		NM_001031853	ENSG00000188487	INSC	-	INSC spindle orientation adaptor protein	protein-coding
73834	chr15	49216021	49216570	+	0	NA	intron (NR_147895, intron 2 of 10)	L1M1|LINE|L1	46048	NM_002044	2585		NM_002044	ENSG00000156958	GALK2	GK2	galactokinase 2	protein-coding
72354	chr15	31341171	31342050	+	0	NA	intron (NM_001302461, intron 1 of 1).3	AluJr|SINE|Alu	14775	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
97261	chr17	43005201	43005650	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-1359	NM_001330230	3430		NM_005533	ENSG00000068079	IFI35	IFP35	interferon induced protein 35	protein-coding
225708	chr9	36604221	36604480	+	0	NA	intron (NR_046337, intron 7 of 17)	AluSx|SINE|Alu	31455	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
47737	chr12	6493701	6495350	+	0	NA	intron (NM_014865, intron 1 of 31)	MIRb|SINE|MIR	423	NM_014865	9918		NM_014865	ENSG00000010292	NCAPD2	CAP-D2|CNAP1|MCPH21|hCAP-D2	non-SMC condensin I complex subunit D2	protein-coding
29474	chr10	70561171	70561330	+	0	NA	intron (NM_014431, intron 18 of 19)	intron (NM_014431, intron 18 of 19)	41491	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
208662	chr7	73152851	73153150	+	0	NA	intron (NM_001382494, intron 1 of 8)	AluJr|SINE|Alu	-1924	NR_003580	100093631		NR_003580	ENSG00000293241	GTF2IP4	GTF2I	general transcription factor IIi pseudogene 4	pseudo
222661	chr8	141183421	141184130	+	0	NA	intron (NM_014957, intron 17 of 22)	intron (NM_014957, intron 17 of 22)	44799	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
223032	chr8	143339601	143340430	+	0	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	-5135	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
221614	chr8	125607621	125608430	+	0	NA	Intergenic	Intergenic	175816	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
63213	chr13	113837821	113838080	+	0	NA	intron (NM_000820, intron 6 of 14)	intron (NM_000820, intron 6 of 14)	22340	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
107906	chr18	57434051	57434350	+	0	NA	Intergenic	Intergenic	-1174	NM_004852	9480		NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
152459	chr22	20700521	20700780	+	0	NA	promoter-TSS (NR_026815)	promoter-TSS (NR_026815)	-464	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
83625	chr16	28258551	28258850	+	0	NA	Intergenic	Intergenic	-33825	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
73017	chr15	40764901	40766200	+	0	NA	3' UTR (NM_018163, exon 11 of 11)	3' UTR (NM_018163, exon 11 of 11)	1482	NM_005258	2644		NM_005258	ENSG00000137880	GCHFR	GFRP|HsT16933|P35	GTP cyclohydrolase I feedback regulator	protein-coding
222805	chr8	142450721	142451500	+	0	NA	intron (NM_001702, intron 1 of 30)	CpG	1461	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
70102	chr14	100223271	100223430	+	0	NA	Intergenic	Intergenic	-15794	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
218981	chr8	61716601	61717330	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	2177	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
126388	chr2	27557601	27558000	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-18722	NM_032266	84226		NM_032266	ENSG00000221843	SPATA31H1	C2orf16	SPATA31 subfamily H member 1	protein-coding
161336	chr3	40178821	40179250	+	0	NA	intron (NR_033965, intron 2 of 2)	intron (NR_033965, intron 2 of 2)	79024	NM_001284426	25924		NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
199693	chr6	123472551	123472650	+	0	NA	TTS (NR_110844)	TTS (NR_110844)	32996	NR_110844	101927990		NR_110844	ENSG00000235535	TRDN-AS1	HRAT13	TRDN antisense RNA 1	ncRNA
54954	chr12	96247601	96248000	+	0	NA	intron (NM_005230, intron 3 of 4)	intron (NM_005230, intron 3 of 4)	-7698	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
13719	chr1	116789871	116790630	+	0	NA	Intergenic	L1PB1|LINE|L1	35820	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
215079	chr7	154915001	154915580	+	0	NA	Intergenic	Intergenic	-13227	NR_024476	100132707		NR_024476		PAXIP1-AS2	PAXIP1OS	PAXIP1 antisense RNA 2	ncRNA
120167	chr19	42247051	42247580	+	0	NA	TTS (NM_006494)	TTS (NM_006494)	-4713	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
190260	chr5	179059921	179060930	+	0	NA	promoter-TSS (NM_014594)	promoter-TSS (NM_014594)	52	NM_014594	30832		NM_014594	ENSG00000177932	ZNF354C	KID3	zinc finger protein 354C	protein-coding
96238	chr17	39806451	39806930	+	0	NA	intron (NM_001257408, intron 2 of 6)	MLT1F2|LTR|ERVL-MaLR	-28465	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
239456	chrY	56717901	56718250	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-236180	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
55496	chr12	104761371	104761730	+	0	NA	3' UTR (NM_001173982, exon 3 of 3)	3' UTR (NM_001173982, exon 3 of 3)	169917	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
277	chr1	934371	934980	+	0	NA	intron (NM_001385641, intron 4 of 13)	CpG	8944	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
107656	chr18	48995021	48995480	+	0	NA	Intergenic	Intergenic	-28453	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
211911	chr7	112390851	112392330	+	0	NA	Intergenic	CpG	-31554	NM_001197080	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
181843	chr5	53007021	53007480	+	0	NA	intron (NR_073107, intron 1 of 28)	intron (NR_073107, intron 1 of 28)	17898	NM_002203	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
155857	chr22	39468971	39469330	+	0	NA	intron (NM_002409, intron 1 of 1)	intron (NM_002409, intron 1 of 1)	7672	NR_126469	104502417		NR_126469	ENSG00000227188	MGAT3-AS1	TapSAKI	MGAT3 antisense RNA 1	ncRNA
207150	chr7	43572471	43572850	+	0	NA	Intergenic	Intergenic	-10448	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
201578	chr6	149334001	149334200	+	0	NA	intron (NM_015093, intron 1 of 8)	intron (NM_015093, intron 1 of 8)	15800	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
164107	chr3	56677371	56677730	+	0	NA	intron (NM_001365638, intron 1 of 22)	MIR|SINE|MIR	5687	NM_001363940	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
228684	chr9	107488351	107488900	+	0	NA	intron (NM_004235, intron 2 of 4)	CpG	1144	NM_004235	9314		NM_004235	ENSG00000136826	KLF4	EZF|GKLF	KLF transcription factor 4	protein-coding
131762	chr2	98470051	98470900	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	24465	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
97592	chr17	44110021	44110450	+	0	NA	intron (NM_001382393, intron 3 of 26)	intron (NM_001382393, intron 3 of 26)	-5677	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
123939	chr19	55377871	55378030	+	0	NA	intron (NM_139172, intron 4 of 4)	CpG-15176	1124	NM_139172	147744		NM_139172	ENSG00000160472	TMEM190	MDAC1	transmembrane protein 190	protein-coding
189878	chr5	177314071	177314230	+	0	NA	Intergenic	Intergenic	-2252	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
96989	chr17	42278471	42278630	+	0	NA	Intergenic	AluJo|SINE|Alu	-2159	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
18997	chr1	169484171	169484430	+	0	NA	intron (NM_006996, intron 1 of 5)	intron (NM_006996, intron 1 of 5)	1644	NM_006996	10560		NM_006996	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 member 2	protein-coding
166599	chr3	119236701	119237500	+	0	NA	intron (NM_212543, intron 1 of 8)	intron (NM_212543, intron 1 of 8)	3778	NM_003778	8702		NM_003778	ENSG00000121578	B4GALT4	B4Gal-T4|beta4Gal-T4	beta-1,4-galactosyltransferase 4	protein-coding
206740	chr7	36657101	36657530	+	0	NA	intron (NM_001177506, intron 4 of 21)	MIRb|SINE|MIR	-57195	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
209543	chr7	77200671	77200830	+	0	NA	promoter-TSS (NM_006682)	promoter-TSS (NM_006682)	-931	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
1841	chr1	6263671	6264130	+	0	NA	TTS (NM_181865)	TTS (NM_181865)	-2802	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
150455	chr21	42497901	42498300	+	0	NA	TTS (NR_135518)	TTS (NR_135518)	-1522	NM_018964	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
17905	chr1	160169601	160169830	+	0	NA	intron (NM_144699, intron 10 of 21)	intron (NM_144699, intron 10 of 21)	-7696	NM_001001734	480		NM_144699	ENSG00000132681	ATP1A4	ATP1A1|ATP1AL2	ATPase Na+/K+ transporting subunit alpha 4	protein-coding
215373	chr7	157406151	157406450	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	-59931	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
220809	chr8	102781651	102781950	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	-25022	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
72633	chr15	38454021	38455030	+	0	NA	intron (NM_173611, intron 1 of 7)	CpG	398	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
113603	chr19	10293601	10293830	+	0	NA	exon (NM_003259, exon 7 of 11)	exon (NM_003259, exon 7 of 11)	3763	NM_003259	7087		NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	intercellular adhesion molecule 5	protein-coding
71605	chr14	106636701	106636850	+	0	NA	Intergenic	L1ME2|LINE|L1	154336	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
235321	chrX	43165251	43165350	+	0	NA	Intergenic	Intergenic	-11694	NR_110387	101927501		NR_110387	ENSG00000224294	PINCR	-	p53-induced noncoding RNA	ncRNA
221136	chr8	118548501	118549200	+	0	NA	intron (NM_207506, intron 2 of 3)	L1PA3|LINE|L1	-72151	NR_038210	552860		NR_038210		SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA
8967	chr1	44560851	44561150	+	0	NA	intron (NM_001319957, intron 1 of 13)	intron (NM_001319957, intron 1 of 13)	15507	NR_049849	100847089		NR_049849	ENSG00000263381	MIR5584	-	microRNA 5584	ncRNA
68039	chr14	75196501	75196700	+	0	NA	Intergenic	Intergenic	-19988	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
173905	chr4	25178901	25179180	+	0	NA	intron (NR_037934, intron 1 of 1)	intron (NR_037934, intron 1 of 1)	18368	NR_037934	285540		NR_037934		SEPSECS-AS1	-	SEPSECS antisense RNA 1 (head to head)	ncRNA
121630	chr19	47444321	47444950	+	0	NA	intron (NM_015063, intron 4 of 9)	intron (NM_015063, intron 4 of 9)	-22402	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
209270	chr7	75911151	75911450	+	0	NA	Intergenic	Intergenic	-3855	NM_001382658	5447		NM_000941	ENSG00000127948	POR	CPR|CYPOR|P450R	cytochrome p450 oxidoreductase	protein-coding
56631	chr12	118354901	118355300	+	0	NA	intron (NM_001346487, intron 1 of 20)	MER44D|DNA|TcMar-Tigger	4605	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
88699	chr16	85823371	85823930	+	0	NA	Intergenic	(TCATCA)n|Simple_repeat|Simple_repeat	23955	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
113953	chr19	10762501	10763650	+	0	NA	intron (NM_001005362, intron 2 of 19)	AluSz6|SINE|Alu	-17179	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
60070	chr13	33676471	33676930	+	0	NA	promoter-TSS (NM_001243476)	promoter-TSS (NM_001243476)	94	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
57377	chr12	121801701	121802280	+	0	NA	intron (NR_152737, intron 1 of 4)	CpG-6121	956	NR_152738	338799		NM_178538	ENSG00000212694	LINC01089	LIMT	long intergenic non-protein coding RNA 1089	ncRNA
224307	chr9	6605171	6605400	+	0	NA	intron (NM_000170, intron 5 of 24)	intron (NM_000170, intron 5 of 24)	40444	NM_000170	2731		NM_000170	ENSG00000178445	GLDC	GCE|GCE1|GCSP|HYGN1	glycine decarboxylase	protein-coding
82297	chr16	15606601	15606800	+	0	NA	intron (NM_001184998, intron 21 of 26).2	intron (NM_001184998, intron 21 of 26).2	4395	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
36666	chr11	8099151	8099650	+	0	NA	intron (NM_003320, intron 10 of 12)	intron (NM_003320, intron 10 of 12)	18189	NM_177972	7275		NM_003320	ENSG00000166402	TUB	RDOB|rd5	TUB bipartite transcription factor	protein-coding
173655	chr4	13546921	13548280	+	0	NA	non-coding (NR_015450, exon 1 of 1)	non-coding (NR_015450, exon 1 of 1)	224	NR_015450	285548		NR_015450		LINC01096	-	long intergenic non-protein coding RNA 1096	ncRNA
57668	chr12	122752331	122753680	+	0	NA	intron (NM_003677, intron 1 of 7)	CpG	181	NM_003677	8562		NM_003677	ENSG00000139726	DENR	DRP|DRP1|SMAP-3	density regulated re-initiation and release factor	protein-coding
38574	chr11	46114171	46114400	+	0	NA	intron (NR_147890, intron 1 of 18)	intron (NR_147890, intron 1 of 18)	6534	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
184402	chr5	98910251	98910550	+	0	NA	intron (NR_157078, intron 2 of 36)	L1MC5a|LINE|L1	-18162	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
90517	chr17	1469821	1471180	+	0	NA	exon (NM_001080950, exon 23 of 32)	exon (NM_001080950, exon 23 of 32)	-14268	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
124231	chr19	57318671	57319050	+	0	NA	Intergenic	L1PA15|LINE|L1	-1612	NM_213598	125919		NM_213598	ENSG00000178229	ZNF543	-	zinc finger protein 543	protein-coding
123751	chr19	55078271	55078630	+	0	NA	intron (NM_133180, intron 3 of 19)	MSR1|Satellite|Satellite	-1942	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
226218	chr9	65764051	65764230	+	0	NA	Intergenic	Intergenic	-26981	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
113704	chr19	10426451	10426830	+	0	NA	intron (NM_001111307, intron 1 of 14)	AluSz6|SINE|Alu	-4205	NM_001111308	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
178114	chr4	141220521	141221590	+	0	NA	5' UTR (NM_014487, exon 1 of 10)	5' UTR (NM_014487, exon 1 of 10)	160	NM_001292002	27309		NM_014487	ENSG00000109445	ZNF330	HSA6591|NOA36	zinc finger protein 330	protein-coding
39357	chr11	59558571	59558880	+	0	NA	Intergenic	Intergenic	36433	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
42965	chr11	73756401	73757080	+	0	NA	intron (NM_198896, intron 1 of 7)	AluSx|SINE|Alu	3353	NM_001243719	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
83272	chr16	24010221	24010790	+	0	NA	intron (NM_212535, intron 3 of 16)	intron (NM_212535, intron 3 of 16)	174522	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
127065	chr2	37377171	37377850	+	0	NA	Intergenic	Tigger12|DNA|TcMar-Tigger	32880	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
2594	chr1	9874671	9875330	+	0	NA	intron (NM_020248, intron 3 of 5)	intron (NM_020248, intron 3 of 5)	35269	NM_020248	56998		NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
42990	chr11	73961121	73961380	+	0	NA	intron (NM_153614, intron 3 of 7)	AluJr|SINE|Alu	10224	NM_001377263	374407		NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
64970	chr14	36657521	36657780	+	0	NA	promoter-TSS (NM_006194)	promoter-TSS (NM_006194)	82	NM_006194	5083		NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
171184	chr3	195676901	195677100	+	0	NA	intron (NR_003265, intron 10 of 14)	intron (NR_003265, intron 10 of 14)	-11498	NR_122105	440993		NM_001013714		MIR570HG	LINC00969	MIR570 host gene	ncRNA
83752	chr16	28691121	28692030	+	0	NA	intron (NM_001199142, intron 1 of 20)	AluSx|SINE|Alu	3017	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
199288	chr6	111982701	111982930	+	0	NA	Intergenic	Intergenic	-71289	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
195191	chr6	36069571	36069730	+	0	NA	intron (NM_139014, intron 3 of 10)	intron (NM_139014, intron 3 of 10)	41842	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
85366	chr16	50269521	50270180	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	3299	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
172209	chr4	1295071	1295230	+	0	NA	intron (NR_123716, intron 1 of 6)	intron (NR_123716, intron 1 of 6)	5259	NM_001297431	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
224665	chr9	21078751	21079100	+	0	NA	promoter-TSS (NM_002176)	promoter-TSS (NM_002176)	-983	NM_002176	3456		NM_002176	ENSG00000171855	IFNB1	IFB|IFF|IFN-beta|IFNB	interferon beta 1	protein-coding
193960	chr6	31688251	31688880	+	0	NA	intron (NR_033488, intron 14 of 19).5	MamRep38|DNA|hAT	-8192	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
39159	chr11	57322771	57323330	+	0	NA	intron (NM_033396, intron 1 of 11)	MIRb|SINE|MIR	1902	NM_033396	85456		NM_033396	ENSG00000149115	TNKS1BP1	CNOT12|TAB182	tankyrase 1 binding protein 1	protein-coding
55285	chr12	103270721	103271180	+	0	NA	intron (NR_103526, intron 6 of 10)	intron (NR_103526, intron 6 of 10)	119108	NR_126333	101929058		NR_126333	ENSG00000257860	C12orf42-AS1	-	C12orf42 antisense RNA 1	ncRNA
120239	chr19	42388671	42389030	+	0	NA	intron (NM_032488, intron 2 of 3)	G-rich|Low_complexity|Low_complexity	1447	NM_032488	84518		NM_032488	ENSG00000105427	CNFN	PLAC8L2	cornifelin	protein-coding
176193	chr4	83484421	83485850	+	0	NA	promoter-TSS (NM_001345962)	promoter-TSS (NM_001345962)	-35	NM_001345962	84142		NM_139076	ENSG00000163322	ABRAXAS1	ABRA1|CCDC98|FAM175A	abraxas 1, BRCA1 A complex subunit	protein-coding
87046	chr16	68290671	68290830	+	0	NA	intron (NM_001076785, intron 6 of 11)	intron (NM_001076785, intron 6 of 11)	20196	NM_032178	84138		NM_032178	ENSG00000103061	SLC7A6OS	EPM12|Iwr1	solute carrier family 7 member 6 opposite strand	protein-coding
169974	chr3	179324301	179325480	+	0	NA	intron (NM_001375805, intron 1 of 6)	intron (NM_001375805, intron 1 of 6)	1437	NM_001375807	51193		NM_016331	ENSG00000121864	ZNF639	ANC-2H01|ANC_2H01|ZASC1	zinc finger protein 639	protein-coding
215046	chr7	152585221	152585480	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	90791	NM_005431	7516		NM_005431	ENSG00000196584	XRCC2	FANCU|POF17|SPGF50	X-ray repair cross complementing 2	protein-coding
94644	chr17	30119401	30119730	+	0	NA	intron (NM_032141, intron 2 of 6)	AluSx|SINE|Alu	-2405	NR_036149	100423003		NR_036149	ENSG00000284399	MIR3184	-	microRNA 3184	ncRNA
219158	chr8	66453221	66453480	+	0	NA	intron (NM_144650, intron 9 of 13)	intron (NM_144650, intron 9 of 13)	20846	NM_144650	137872		NM_144650	ENSG00000147576	ADHFE1	ADH8|HMFT2263|HOT	alcohol dehydrogenase iron containing 1	protein-coding
86533	chr16	67169421	67171350	+	0	NA	promoter-TSS (NM_001276307)	promoter-TSS (NM_001276307)	-112	NM_001276309	8996		NM_003946	ENSG00000140939	NOL3	ARC|FCM|MYOCL1|MYP|NOP|NOP30	nucleolar protein 3	protein-coding
63335	chr13	114018071	114018230	+	0	NA	exon (NM_007368, exon 11 of 24)	exon (NM_007368, exon 11 of 24)	-44074	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
76908	chr15	78032801	78033200	+	0	NA	intron (NM_144572, intron 3 of 12)	L1MEc|LINE|L1	-38775	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
62855	chr13	110412201	110412500	+	0	NA	intron (NM_001846, intron 4 of 47)	intron (NM_001846, intron 4 of 47)	50937	NM_001267044	100129836		NM_001267044	ENSG00000224821	COL4A2-AS2	-	COL4A2 antisense RNA 2	ncRNA
33874	chr10	124415301	124415680	+	0	NA	intron (NM_001322970, intron 1 of 11)	intron (NM_001322970, intron 1 of 11)	3433	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
216645	chr8	22118651	22119230	+	0	NA	intron (NM_005144, intron 16 of 18)	intron (NM_005144, intron 16 of 18)	-9521	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
235827	chrX	49278371	49278530	+	0	NA	intron (NM_033215, intron 1 of 3)	intron (NM_033215, intron 1 of 3)	8657	NM_033215	89801		NM_033215	ENSG00000049769	PPP1R3F	HB2E|LL0XNC01-7P3.1|R3F	protein phosphatase 1 regulatory subunit 3F	protein-coding
57179	chr12	121437821	121438080	+	0	NA	intron (NM_001005366, intron 21 of 22)	intron (NM_001005366, intron 21 of 22)	6402	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
117937	chr19	33160201	33161080	+	0	NA	intron (NM_173479, intron 8 of 10)	L2b|LINE|L2	28526	NM_173479	126248		NM_173479	ENSG00000166359	WDR88	PQWD	WD repeat domain 88	protein-coding
105829	chr18	2976971	2977400	+	0	NA	intron (NM_001375808, intron 1 of 19)	AluJb|SINE|Alu	-30562	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
189657	chr5	176355501	176355700	+	0	NA	exon (NM_020444, exon 4 of 9)	exon (NM_020444, exon 4 of 9)	6164	NM_020444	57179		NM_020444	ENSG00000122203	KIAA1191	p33MONOX|p60MONOX	KIAA1191	protein-coding
146232	chr20	48815521	48815980	+	0	NA	intron (NM_020820, intron 1 of 39)	AluSx|SINE|Alu	12249	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
34765	chr11	199521	200180	+	0	NA	intron (NM_053280, intron 6 of 6)	intron (NM_053280, intron 6 of 6)	3089	NM_053280	113746		NM_053280	ENSG00000177947	CIMAP1A	CT135|ODF3|SHIPPO1|TISP50	ciliary microtubule associated protein 1A	protein-coding
168806	chr3	152204251	152204580	+	0	NA	intron (NR_136178, intron 1 of 2)	intron (NR_136178, intron 1 of 2)	1014	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
203566	chr7	901321	902130	+	0	NA	intron (NM_006869, intron 6 of 10)	intron (NM_006869, intron 6 of 10)	19164	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
155678	chr22	39042871	39043500	+	0	NA	intron (NM_145298, intron 2 of 6)	intron (NM_145298, intron 2 of 6)	2321	NM_001006666	200316		NM_145298	ENSG00000128394	APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	apolipoprotein B mRNA editing enzyme catalytic subunit 3F	protein-coding
212132	chr7	116461571	116461950	+	0	NA	Intergenic	Intergenic	-37978	NM_001206747	858		NM_001233	ENSG00000105971	CAV2	CAV	caveolin 2	protein-coding
214854	chr7	151343821	151344230	+	0	NA	intron (NM_001385356, intron 1 of 13)	AluYm1|SINE|Alu	2213	NM_016118	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
224801	chr9	22446601	22446800	+	0	NA	promoter-TSS (NM_022160)	promoter-TSS (NM_022160)	-124	NM_022160	63951		NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
102427	chr17	75666701	75668200	+	0	NA	promoter-TSS (NM_001003715)	promoter-TSS (NM_001003715)	112	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
232429	chr9	136098501	136099530	+	0	NA	Intergenic	Intergenic	-3726	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
189907	chr5	177359471	177360230	+	0	NA	intron (NM_006480, intron 1 of 14)	intron (NM_006480, intron 1 of 14)	1926	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
173532	chr4	10015171	10015330	+	0	NA	intron (NM_020041, intron 2 of 11)	intron (NM_020041, intron 2 of 11)	6247	NM_020041	56606		NM_020041	ENSG00000109667	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 member 9	protein-coding
34790	chr11	223401	223600	+	0	NA	intron (NR_163391, intron 3 of 4)	intron (NR_163391, intron 3 of 4)	12842	NM_001370314	23410		NM_012239	ENSG00000142082	SIRT3	SIR2L3	sirtuin 3	protein-coding
187459	chr5	142122901	142123300	+	0	NA	intron (NM_030571, intron 1 of 7)	AluSz|SINE|Alu	14321	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
16417	chr1	154499601	154499800	+	0	NA	intron (NR_135169, intron 1 of 5)	L2c|LINE|L2	-2519	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
159426	chr3	13581871	13582230	+	0	NA	intron (NM_001004019, intron 2 of 17)	MIRb|SINE|MIR	13310	NM_001165035	2199		NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
1699	chr1	5053801	5054000	+	0	NA	Intergenic	L1PB3|LINE|L1	399291	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
92471	chr17	8739721	8740100	+	0	NA	intron (NM_144681, intron 4 of 6)	intron (NM_144681, intron 4 of 6)	4926	NM_144681	146849		NM_144681	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
103189	chr17	77455301	77455730	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	1488	NM_001293698	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
233187	chr9	137198451	137199150	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	1941	NM_001128228	286262		NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79	taperin	protein-coding
201986	chr6	152298751	152298850	+	0	NA	intron (NM_033071, intron 92 of 145)	intron (NM_033071, intron 92 of 145)	-81730	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
145350	chr20	41144451	41145000	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-6725	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
235545	chrX	47240121	47240380	+	0	NA	intron (NM_001371072, intron 4 of 20)	intron (NM_001371072, intron 4 of 20)	7241	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
161517	chr3	42593221	42593880	+	0	NA	intron (NM_016305, intron 3 of 3)	MER2|DNA|TcMar-Tigger	2690	NM_001370300	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
162052	chr3	46810171	46810330	+	0	NA	intron (NR_160551, intron 2 of 2)	intron (NR_160551, intron 2 of 2)	2324	NR_160551	729756		NR_160551		PRSS44P	PRSS44|TESSP-4|TESSP4	serine protease 44, pseudogene	pseudo
99736	chr17	50918571	50919140	+	0	NA	Intergenic	Intergenic	-50877	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
203598	chr7	934171	934430	+	0	NA	intron (NM_006869, intron 2 of 10)	intron (NM_006869, intron 2 of 10)	-7084	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
129403	chr2	68907801	68908900	+	0	NA	Intergenic	Intergenic	-36953	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
230425	chr9	128141971	128142530	+	0	NA	Intergenic	Intergenic	-7203	NM_005564	3934		NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL|p25	lipocalin 2	protein-coding
143018	chr20	20780551	20780650	+	0	NA	Intergenic	Intergenic	-67956	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
4062	chr1	19061251	19062150	+	0	NA	Intergenic	L2b|LINE|L2	-105024	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
168587	chr3	149085721	149087380	+	0	NA	promoter-TSS (NM_139048)	promoter-TSS (NM_139048)	4	NM_001318934	6596		NM_003071	ENSG00000071794	HLTF	HIP116|HIP116A|HLTF1|RNF80|SMARCA3|SNF2L3|ZBU1	helicase like transcription factor	protein-coding
204056	chr7	1972221	1972480	+	0	NA	intron (NM_001304524, intron 13 of 16)	L1MD|LINE|L1	-31779	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
208916	chr7	74059701	74060100	+	0	NA	exon (NM_001278913, exon 19 of 29)	exon (NM_001278913, exon 19 of 29)	-23904	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
59918	chr13	30979401	30979600	+	0	NA	Intergenic	MER52C|LTR|ERV1	46844	NM_001353389	122046		NM_152325	ENSG00000175664	TEX26	C13orf26	testis expressed 26	protein-coding
181221	chr5	39179901	39180100	+	0	NA	intron (NM_199335, intron 2 of 17)	L2c|LINE|L2	39563	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
193648	chr6	30842971	30843830	+	0	NA	intron (NR_134610, intron 2 of 2).4	MER61C|LTR|ERV1	4759	NR_134610	105375014		NR_134610	ENSG00000237923	LINC02570	-	long intergenic non-protein coding RNA 2570	ncRNA
22437	chr1	220281151	220281350	+	0	NA	Intergenic	L2c|LINE|L2	-8797	NM_012414	25782		NM_012414	ENSG00000118873	RAB3GAP2	MARTS1|RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating non-catalytic protein subunit 2	protein-coding
78534	chr15	92955921	92956830	+	0	NA	intron (NM_001271, intron 15 of 38)	intron (NM_001271, intron 15 of 38)	51976	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
149728	chr21	34198571	34199330	+	0	NA	Intergenic	Intergenic	18273	NR_027266	114036		NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
155351	chr22	38268271	38268930	+	0	NA	intron (NM_001195072, intron 1 of 9)	intron (NM_001195072, intron 1 of 9)	4064	NM_001195071	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
15033	chr1	148361201	148362100	+	0	NA	TTS (NR_104082)	TTS (NR_104082)	883	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
14948	chr1	147669271	147669840	+	0	NA	non-coding (NR_136634, exon 1 of 10)	non-coding (NR_136634, exon 1 of 10)	969	NR_136634	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
198767	chr6	108781851	108782630	+	0	NA	Intergenic	Intergenic	30586	NR_033376	387111		NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
79923	chr16	1733301	1733500	+	0	NA	intron (NM_015133, intron 4 of 31)	intron (NM_015133, intron 4 of 31)	-1585	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
60463	chr13	41058301	41058900	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	2786	NM_001370330	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
132444	chr2	105848471	105848830	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-3197	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
41345	chr11	65930771	65930930	+	0	NA	Intergenic	Intergenic	11424	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
191580	chr6	12016571	12016730	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	4338	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
79892	chr16	1558871	1559750	+	0	NA	intron (NM_014714, intron 18 of 30)	intron (NM_014714, intron 18 of 30)	-21217	NR_135176	105371046		NR_135176	ENSG00000260989	LOC105371046	-	uncharacterized LOC105371046	ncRNA
424	chr1	1085151	1086100	+	0	NA	intron (NM_017891, intron 7 of 9)	intron (NM_017891, intron 7 of 9)	-11319	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
48016	chr12	6935001	6935400	+	0	NA	intron (NM_001007026, intron 4 of 9)	intron (NM_001007026, intron 4 of 9)	7241	NM_001940	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
170205	chr3	184134601	184136430	+	0	NA	exon (NM_003907, exon 1 of 16)	exon (NM_003907, exon 1 of 16)	157	NM_003907	8893		NM_003907	ENSG00000145191	EIF2B5	CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM|VWM5	eukaryotic translation initiation factor 2B subunit epsilon	protein-coding
161760	chr3	44761251	44762530	+	0	NA	promoter-TSS (NM_020242)	promoter-TSS (NM_020242)	96	NM_020242	56992		NM_020242	ENSG00000163808	KIF15	BRDCS2|HKLP2|KLP2|KNSL7|NY-BR-62	kinesin family member 15	protein-coding
29732	chr10	72102851	72103150	+	0	NA	intron (NM_001369102, intron 10 of 11)	intron (NM_001369102, intron 10 of 11)	-13968	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
176342	chr4	88286101	88286580	+	0	NA	intron (NR_134237, intron 1 of 3)	L1ME3A|LINE|L1	1410	NR_134236	105369192		NR_134236	ENSG00000246375	PPM1K-DT	-	PPM1K divergent transcript	ncRNA
147625	chr20	62146001	62146280	+	0	NA	intron (NM_198935, intron 1 of 10)	intron (NM_198935, intron 1 of 10)	2371	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
22955	chr1	226002051	226003150	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-3257	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
110253	chr19	1790021	1790380	+	0	NA	intron (NR_047593, intron 21 of 28)	(CTCCC)n|Simple_repeat|Simple_repeat	22076	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
205844	chr7	24906971	24907990	+	0	NA	intron (NM_015550, intron 1 of 22)	MIRb|SINE|MIR	-14859	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
198510	chr6	106515201	106515700	+	0	NA	intron (NM_001371242, intron 3 of 21)	intron (NM_001371242, intron 3 of 21)	3595	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
122235	chr19	48997971	48998630	+	0	NA	intron (NR_135578, intron 1 of 14)	L2c|LINE|L2	4413	NR_135578	10856		NM_006666	ENSG00000183207	RUVBL2	CGI-46|ECP-51|ECP51|INO80J|REPTIN|RVB2|TAP54-beta|TIH2|TIP48|TIP49B	RuvB like AAA ATPase 2	protein-coding
191669	chr6	13445871	13446030	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	26113	NR_038459	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
161491	chr3	42519721	42519980	+	0	NA	intron (NM_004624, intron 3 of 12)	L2b|LINE|L2	12756	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
217278	chr8	27351001	27351230	+	0	NA	intron (NM_173174, intron 6 of 35)	FRAM|SINE|Alu	25551	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
100728	chr17	63897051	63897580	+	0	NA	promoter-TSS (NM_001317)	promoter-TSS (NM_001317)	-741	NM_001317	1442		NM_001317	ENSG00000136488	CSH1	CS-1|CSA|CSMT|GHB3|PL|hCS-1|hCS-A	chorionic somatomammotropin hormone 1	protein-coding
32673	chr10	103906271	103906580	+	0	NA	intron (NM_024928, intron 3 of 9)	AluJr|SINE|Alu	11759	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
11746	chr1	92029621	92030880	+	0	NA	exon (NM_173567, exon 1 of 7)	exon (NM_173567, exon 1 of 7)	265	NM_173567	253152		NM_173567	ENSG00000172031	EPHX4	ABHD7|EH4|EPHXRP	epoxide hydrolase 4	protein-coding
184620	chr5	107248121	107248380	+	0	NA	Intergenic	Intergenic	-237236	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
10048	chr1	58623901	58624100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-46748	NM_002353	4070		NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor associated calcium signal transducer 2	protein-coding
3519	chr1	16059871	16060300	+	0	NA	intron (NM_182623, intron 4 of 6)	intron (NM_182623, intron 4 of 6)	11323	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
14771	chr1	146040601	146040830	+	0	NA	Intergenic	AluSx1|SINE|Alu	11529	NR_104085	101954276		NR_104085	ENSG00000201558	RNVU1-6	RNU1-99|vU1.6	RNA, variant U1 small nuclear 6	snRNA
169038	chr3	153026001	153026300	+	0	NA	Intergenic	Intergenic	-136076	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
167160	chr3	128065801	128066200	+	0	NA	intron (NM_001319086, intron 9 of 9)	AluSc8|SINE|Alu	-9810	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
9640	chr1	52556051	52556430	+	0	NA	Intergenic	L2b|LINE|L2	-3148	NM_001009881	23318		NM_015269	ENSG00000134744	TUT4	PAPD3|TENT3A|ZCCHC11	terminal uridylyl transferase 4	protein-coding
7274	chr1	32371751	32373080	+	0	NA	intron (NR_125352, intron 9 of 11)	intron (NR_125352, intron 9 of 11)	9876	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
14818	chr1	146294671	146294830	+	0	NA	Intergenic	MIRb|SINE|MIR	-3023	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
13668	chr1	116563301	116563500	+	0	NA	intron (NR_026665, intron 1 of 5)	THE1B-int|LTR|ERVL-MaLR	-3289	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
188279	chr5	151125171	151125650	+	0	NA	intron (NM_001193544, intron 13 of 24)	MER113|DNA|hAT-Charlie	16274	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
36681	chr11	8610671	8611030	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-16622	NM_001352388	65975		NM_030906	ENSG00000130413	STK33	-	serine/threonine kinase 33	protein-coding
59848	chr13	30466951	30467050	+	0	NA	intron (NM_001370340, intron 1 of 4)	intron (NM_001370340, intron 1 of 4)	-1023	NM_001363661	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
123828	chr19	55218751	55219050	+	0	NA	Intergenic	AluSq2|SINE|Alu	-9399	NM_001161440	5794		NM_002842	ENSG00000080031	PTPRH	R-PTP-H|SAP1	protein tyrosine phosphatase receptor type H	protein-coding
117492	chr19	19816401	19818330	+	0	NA	intron (NM_001099269, intron 1 of 3)	MER92B|LTR|ERV1	4385	NM_001099269	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
144320	chr20	34875921	34877000	+	0	NA	promoter-TSS (NM_018677)	promoter-TSS (NM_018677)	-65	NM_001076552	55902		NM_018677	ENSG00000131069	ACSS2	ACAS2|ACECS|ACS|ACSA|AceCS1|dJ1161H23.1	acyl-CoA synthetase short chain family member 2	protein-coding
157412	chr22	45009601	45010230	+	0	NA	promoter-TSS (NM_001135862)	promoter-TSS (NM_001135862)	90	NM_001135862	112885		NM_138415	ENSG00000056487	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
12392	chr1	101283571	101284980	+	0	NA	Intergenic	Intergenic	-39562	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
152541	chr22	20993921	20994930	+	0	NA	intron (NM_006767, intron 14 of 20)	intron (NM_006767, intron 14 of 20)	-7497	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
171352	chr3	196057771	196058330	+	0	NA	intron (NM_001313966, intron 14 of 16)	MER65A|LTR|ERV1	24040	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
45830	chr11	119368571	119369250	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	-4702	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
78255	chr15	90817401	90817680	+	0	NA	Intergenic	Intergenic	-51048	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
128103	chr2	48105321	48105580	+	0	NA	Intergenic	L1ME3A|LINE|L1	-198952	NM_001190274	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
232355	chr9	135679521	135679780	+	0	NA	Intergenic	Intergenic	16328	NM_001001676	392399		NM_001001676	ENSG00000148386	LCN9	HEL129	lipocalin 9	protein-coding
237910	chrX	131822151	131822500	+	0	NA	intron (NR_026975, intron 2 of 12)	intron (NR_026975, intron 2 of 12)	8318	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
142540	chr20	5101751	5101850	+	0	NA	intron (NM_001009923, intron 4 of 4)	intron (NM_001009923, intron 4 of 4)	11276	NM_001009923	29058		NM_014145	ENSG00000089063	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
14111	chr1	120929151	120929950	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-13050	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
103265	chr17	77690451	77691050	+	0	NA	Intergenic	Intergenic	37809	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
125188	chr2	10123821	10124120	+	0	NA	intron (NR_164157, intron 4 of 12)	intron (NR_164157, intron 4 of 12)	1231	NM_001034	6241		NM_001034	ENSG00000171848	RRM2	C2orf48|R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
137078	chr2	190914921	190915180	+	0	NA	intron (NM_014905, intron 7 of 17)	AluY|SINE|Alu	34229	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
154321	chr22	32080921	32081200	+	0	NA	intron (NM_000343, intron 5 of 14)	intron (NM_000343, intron 5 of 14)	21890	NM_001256314	6523		NM_000343	ENSG00000100170	SLC5A1	D22S675|NAGT|SGLT-1|SGLT1	solute carrier family 5 member 1	protein-coding
187325	chr5	141641751	141642250	+	0	NA	TTS (NM_001130029)	TTS (NM_001130029)	5003	NM_173828	285613		NM_173828	ENSG00000164620	RELL2	C5orf16	RELT like 2	protein-coding
205026	chr7	6503461	6505080	+	0	NA	intron (NM_001145118, intron 15 of 21)	CpG	-20118	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
95884	chr17	38878521	38879430	+	0	NA	intron (NM_001271608, intron 2 of 5)	(TCCCA)n|Simple_repeat|Simple_repeat	8917	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
129291	chr2	68464821	68465700	+	0	NA	TTS (NR_133923)	TTS (NR_133923)	2034	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
177298	chr4	109599101	109599650	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	39129	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
59141	chr13	21453571	21453730	+	0	NA	intron (NM_153251, intron 1 of 11)	L1MEc|LINE|L1	5653	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
93328	chr17	18189901	18190300	+	0	NA	intron (NM_017758, intron 1 of 3)	intron (NM_017758, intron 1 of 3)	6272	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
230053	chr9	127403871	127404230	+	0	NA	exon (NM_001271711, exon 7 of 9)	exon (NM_001271711, exon 7 of 9)	6881	NM_014580	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
120494	chr19	44762121	44762880	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	3843	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
185900	chr5	132775651	132775750	+	0	NA	intron (NM_001098813, intron 1 of 9)	intron (NM_001098813, intron 1 of 9)	1539	NM_015146	23176		NM_015146	ENSG00000164402	SEPTIN8	SEP2|SEPT8|Septin-8	septin 8	protein-coding
161203	chr3	39151801	39153200	+	0	NA	intron (NM_001320560, intron 1 of 4)	intron (NM_001320560, intron 1 of 4)	1091	NM_033027	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
53905	chr12	71626101	71626300	+	0	NA	intron (NM_144982, intron 22 of 34)	intron (NM_144982, intron 22 of 34)	37648	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
63153	chr13	113623301	113623500	+	0	NA	intron (NR_026580, intron 4 of 10)	intron (NR_026580, intron 4 of 10)	34798	NM_000705	496		NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting subunit beta	protein-coding
81187	chr16	4479701	4480100	+	0	NA	intron (NM_001286268, intron 1 of 5).2	AluSx|SINE|Alu	3502	NM_002134	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
79501	chr16	788031	789850	+	0	NA	promoter-TSS (NM_001324411)	promoter-TSS (NM_001324411)	320	NM_022092	63922		NM_022092	ENSG00000127586	CHTF18	C16orf41|C321D2.2|C321D2.3|C321D2.4|CHL12|Ctf18|RUVBL	chromosome transmission fidelity factor 18	protein-coding
159782	chr3	16314751	16315280	+	0	NA	TTS (NM_015150)	TTS (NM_015150)	49803	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
168652	chr3	150407701	150409600	+	0	NA	non-coding (NR_130136, exon 1 of 5)	non-coding (NR_130136, exon 1 of 5)	352	NR_130136	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
173911	chr4	25234601	25235680	+	0	NA	intron (NM_018323, intron 1 of 9)	intron (NM_018323, intron 1 of 9)	1107	NM_018323	55300		NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
206625	chr7	35876871	35877030	+	0	NA	intron (NM_001788, intron 5 of 12)	AluSq|SINE|Alu	75731	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
48228	chr12	8231451	8232500	+	0	NA	non-coding (NR_024254, exon 5 of 5)	non-coding (NR_024254, exon 5 of 5)	-3440	NR_120455	101927905		NR_120454	ENSG00000215241	LINC02449	-	long intergenic non-protein coding RNA 2449	ncRNA
115849	chr19	16533051	16533150	+	0	NA	exon (NM_006387, exon 4 of 17)	exon (NM_006387, exon 4 of 17)	9337	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
74564	chr15	60534121	60534580	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	55172	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
202178	chr6	155971001	155971510	+	0	NA	Intergenic	Intergenic	24458	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
87304	chr16	70163671	70164030	+	0	NA	intron (NR_126007, intron 1 of 2)	intron (NR_126007, intron 1 of 2)	9598	NR_126007	400541		NR_126007	ENSG00000247228	LOC400541	-	uncharacterized LOC400541	ncRNA
185650	chr5	131546021	131546680	+	0	NA	intron (NM_016340, intron 6 of 27)	AluY|SINE|Alu	88879	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
165218	chr3	72951201	72951480	+	0	NA	intron (NR_138564, intron 3 of 6)	intron (NR_138564, intron 3 of 6)	-45403	NM_001318026	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
75622	chr15	67138151	67138250	+	0	NA	intron (NM_001145103, intron 1 of 8)	intron (NM_001145103, intron 1 of 8)	179	NM_001145103	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
13377	chr1	113926521	113926950	+	0	NA	non-coding (NR_110725, exon 4 of 5)	non-coding (NR_110725, exon 4 of 5)	2523	NR_110725	101928846		NR_110725	ENSG00000235527	HIPK1-AS1	-	HIPK1 antisense RNA 1	ncRNA
168902	chr3	152326901	152327630	+	0	NA	intron (NR_164857, intron 3 of 10)	L2b|LINE|L2	13725	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
20671	chr1	200351701	200352500	+	0	NA	intron (NR_040064, intron 4 of 4)	intron (NR_040064, intron 4 of 4)	21692	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
112447	chr19	6375221	6375650	+	0	NA	TTS (NM_032306)	TTS (NM_032306)	481	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
96483	chr17	40281301	40282330	+	0	NA	3' UTR (NM_133264, exon 8 of 8)	3' UTR (NM_133264, exon 8 of 8)	-6064	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
218458	chr8	48288051	48288550	+	0	NA	Intergenic	Intergenic	-263267	NR_105002	101929268		NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
211655	chr7	106265921	106266180	+	0	NA	intron (NM_005746, intron 6 of 10)	MIRc|SINE|MIR	18933	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
52528	chr12	56106271	56106430	+	0	NA	intron (NM_006191, intron 1 of 12)	intron (NM_006191, intron 1 of 12)	1791	NM_006191	5036		NM_006191	ENSG00000170515	PA2G4	EBP1|HG4-1|ITAF45|p38-2G4	proliferation-associated 2G4	protein-coding
166708	chr3	120738101	120738300	+	0	NA	intron (NM_173825, intron 1 of 7)	L1PA5|LINE|L1	4316	NM_173825	285282		NM_173825	ENSG00000144840	RABL3	PNCA5	RAB, member of RAS oncogene family like 3	protein-coding
97286	chr17	43126951	43127630	+	0	NA	intron (NR_003108, intron 1 of 4)	LTR12C|LTR|ERV1	1733	NR_138145	10230		NM_005821	ENSG00000198496	NBR2	NCRNA00192	neighbor of BRCA1 lncRNA 2	ncRNA
222811	chr8	142459251	142459550	+	0	NA	intron (NM_001702, intron 1 of 30)	intron (NM_001702, intron 1 of 30)	9751	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
208812	chr7	73645951	73646330	+	0	NA	Intergenic	Intergenic	-21618	NM_032952	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
114470	chr19	12734151	12735600	+	0	NA	promoter-TSS (NM_001329739)	promoter-TSS (NM_001329739)	-191	NR_138095	79002		NM_024038	ENSG00000123144	TRIR	C19orf43|TERCIR|fSAP18	telomerase RNA component interacting RNase	protein-coding
32900	chr10	110167251	110167700	+	0	NA	Intergenic	AluJr|SINE|Alu	-15495	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
20520	chr1	198678301	198679380	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	39800	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
93964	chr17	21532821	21533280	+	0	NA	non-coding (NR_160801, exon 2 of 2)	non-coding (NR_160801, exon 2 of 2)	18628	NR_160801	339263		NM_001113434	ENSG00000212719	LINC02693	C17orf51	long intergenic non-protein coding RNA 2693	ncRNA
57719	chr12	122873471	122875050	+	0	NA	intron (NM_024667, intron 1 of 3)	MER5B|DNA|hAT-Charlie	21864	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
92270	chr17	8059371	8059600	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	20426	NM_001039131	247		NM_001141	ENSG00000179593	ALOX15B	15-LOX-2	arachidonate 15-lipoxygenase type B	protein-coding
77189	chr15	80567771	80567950	+	0	NA	intron (NM_014862, intron 12 of 18)	intron (NM_014862, intron 12 of 18)	-4916	NR_120363	101929586		NR_120363	ENSG00000259175	LOC101929586	-	uncharacterized LOC101929586	ncRNA
222536	chr8	140584501	140585100	+	0	NA	intron (NM_012154, intron 2 of 18)	L1ME2|LINE|L1	50833	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
201882	chr6	150865071	150865900	+	0	NA	promoter-TSS (NM_001350493)	promoter-TSS (NM_001350493)	-194	NR_146719	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
196897	chr6	52306071	52306750	+	0	NA	Intergenic	Intergenic	-21668	NM_001270472	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
149357	chr21	29297451	29297550	+	0	NA	Intergenic	Intergenic	-1422	NM_001186	571		NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding
211905	chr7	112285401	112285600	+	0	NA	intron (NM_021994, intron 1 of 11)	AluSx3|SINE|Alu	78805	NM_021994	11179		NM_021994	ENSG00000198839	ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
178561	chr4	151112501	151112730	+	0	NA	Intergenic	AluJo|SINE|Alu	8788	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
97073	chr17	42383801	42384780	+	0	NA	intron (NM_001369516, intron 1 of 23)	AluY|SINE|Alu	4152	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
90637	chr17	1659251	1659580	+	0	NA	exon (NM_006445, exon 32 of 43)	exon (NM_006445, exon 32 of 43)	-9549	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
194633	chr6	33577851	33577950	+	0	NA	intron (NM_001188, intron 1 of 5)	intron (NM_001188, intron 1 of 5)	2376	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
189582	chr5	175521171	175522030	+	0	NA	intron (NM_001322978, intron 8 of 10)	intron (NM_001322978, intron 8 of 10)	43040	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
38735	chr11	46897051	46897350	+	0	NA	intron (NM_002334, intron 7 of 37)	MER91B|DNA|hAT-Tip100	21350	NM_002334	4038		NM_002334	ENSG00000134569	LRP4	CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2	LDL receptor related protein 4	protein-coding
213184	chr7	132466471	132466630	+	0	NA	intron (NM_001105543, intron 3 of 3)	MIR|SINE|MIR	109920	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
56511	chr12	116393971	116394130	+	0	NA	Intergenic	Intergenic	34268	NR_039683	100616309		NR_039683	ENSG00000264037	MIR4472-2	-	microRNA 4472-2	ncRNA
27282	chr10	30347651	30347980	+	0	NA	intron (NM_018109, intron 1 of 8)	AluSx|SINE|Alu	1463	NM_018109	55149		NM_018109	ENSG00000107951	MTPAP	PAPD1|SPAX4|TENT6	mitochondrial poly(A) polymerase	protein-coding
158126	chr22	50105651	50106130	+	0	NA	intron (NM_001164104, intron 3 of 25)	intron (NM_001164104, intron 3 of 25)	15634	NM_001164105	54456		NM_018995	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8|SPGF73	Mov10 like RNA helicase 1	protein-coding
207232	chr7	43721201	43722050	+	0	NA	intron (NM_001371314, intron 1 of 7)	intron (NM_001371314, intron 1 of 7)	7898	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
225599	chr9	36149571	36149730	+	0	NA	intron (NM_001287010, intron 3 of 3)	MIR3|SINE|MIR	12865	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
11558	chr1	91165121	91165630	+	0	NA	Intergenic	Intergenic	-143120	NM_032186	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
80340	chr16	2469701	2470150	+	0	NA	Intergenic	Intergenic	-1372	NM_006181	4917		NM_006181	ENSG00000162068	NTN3	NTN2L	netrin 3	protein-coding
144577	chr20	35776651	35777650	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	5135	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
196436	chr6	43475571	43476050	+	0	NA	Intergenic	Intergenic	-1713	NM_001146020	93643		NM_080604	ENSG00000137221	TJAP1	PILT|TJP4	tight junction associated protein 1	protein-coding
227360	chr9	89479601	89480230	+	0	NA	promoter-TSS (NM_001142287)	promoter-TSS (NM_001142287)	-25	NR_163884	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
40859	chr11	65082751	65082850	+	0	NA	intron (NM_080668, intron 4 of 5)	L2c|LINE|L2	1240	NM_080668	113130		NM_080668	ENSG00000146670	CDCA5	SORORIN	cell division cycle associated 5	protein-coding
104859	chr17	81849221	81849680	+	0	NA	intron (NM_000918, intron 4 of 10)	AluSx1|SINE|Alu	11085	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
234857	chrX	24752471	24752630	+	0	NA	intron (NR_165483, intron 25 of 35)	intron (NR_165483, intron 25 of 35)	8109	NR_003007	677773		NR_003007	ENSG00000251869	SCARNA23	ACA12	small Cajal body-specific RNA 23	ncRNA
100357	chr17	59965971	59966130	+	0	NA	intron (NR_110815, intron 1 of 3)	AluSx1|SINE|Alu	954	NR_110816	101927755		NR_110815	ENSG00000267302	RNFT1-DT	-	RNFT1 divergent transcript	ncRNA
230359	chr9	128062701	128062900	+	0	NA	3' UTR (NM_197956, exon 2 of 2)	3' UTR (NM_197956, exon 2 of 2)	4520	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
194734	chr6	33856321	33857980	+	0	NA	Intergenic	Intergenic	39757	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
94145	chr17	28339471	28339630	+	0	NA	exon (NM_021137, exon 2 of 7)	exon (NM_021137, exon 2 of 7)	3789	NM_021137	7126		NM_021137	ENSG00000109079	TNFAIP1	B12|B61|BTBD34|EDP1|hBACURD2	TNF alpha induced protein 1	protein-coding
216173	chr8	11772001	11772280	+	0	NA	intron (NM_001135748, intron 3 of 4)	AluSg7|SINE|Alu	2430	NM_001135748	252969		NM_145043	ENSG00000154328	NEIL2	NEH2|NEI2	nei like DNA glycosylase 2	protein-coding
110748	chr19	2338951	2339250	+	0	NA	exon (NM_001077238, exon 5 of 15)	exon (NM_001077238, exon 5 of 15)	10416	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
72513	chr15	34039921	34040450	+	0	NA	promoter-TSS (NM_020371)	promoter-TSS (NM_020371)	-981	NM_020371	57099		NM_020371	ENSG00000169857	AVEN	PDCD12	apoptosis and caspase activation inhibitor	protein-coding
236121	chrX	57573951	57574050	+	0	NA	Intergenic	LTR55|LTR|ERVL?	-18011	NM_007157	158586		NM_007157	ENSG00000198455	ZXDB	ZNF905|dJ83L6.1	zinc finger X-linked duplicated B	protein-coding
75275	chr15	65051021	65051580	+	0	NA	intron (NM_178859, intron 2 of 3)	L2c|LINE|L2	5913	NM_178859	123264		NM_178859	ENSG00000186198	SLC51B	OSTB|OSTBETA|PBAM2|SLC51A1BP	SLC51 subunit beta	protein-coding
221864	chr8	128313501	128314400	+	0	NA	Intergenic	Intergenic	163834	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
35313	chr11	1030601	1031200	+	0	NA	intron (NM_005961, intron 6 of 32)	intron (NM_005961, intron 6 of 32)	5818	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
172584	chr4	2475451	2476500	+	0	NA	intron (NM_001185009, intron 2 of 8)	intron (NM_001185009, intron 2 of 8)	6522	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
135246	chr2	159711921	159713500	+	0	NA	promoter-TSS (NR_110586)	promoter-TSS (NR_110586)	204	NM_001376255	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
182741	chr5	68273151	68273530	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-15179	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
177266	chr4	109437221	109437780	+	0	NA	intron (NM_001318085, intron 1 of 23)	AluJb|SINE|Alu	-3683	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
137934	chr2	201113251	201113550	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-2704	NM_001127184	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
215824	chr8	6428121	6428780	+	0	NA	intron (NR_136159, intron 3 of 6)	L1MB7|LINE|L1	21297	NM_001322045	79648		NM_024596	ENSG00000147316	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
142273	chr20	3201201	3202080	+	0	NA	intron (NM_023935, intron 2 of 8)	intron (NM_023935, intron 2 of 8)	3042	NM_023935	65992		NM_023935	ENSG00000198171	DDRGK1	C20orf116|SEMDSH|UFBP1|dJ1187M17.3	DDRGK domain containing 1	protein-coding
193254	chr6	29948101	29949500	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	6268	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
174219	chr4	37748571	37748730	+	0	NA	Intergenic	Intergenic	-62274	NM_001085400	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
45183	chr11	117314751	117314850	+	0	NA	intron (NM_138972, intron 1 of 8)	intron (NM_138972, intron 1 of 8)	1456	NM_138972	23621		NM_012104	ENSG00000186318	BACE1	ASP2|BACE|HSPC104	beta-secretase 1	protein-coding
152325	chr22	20392351	20392830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1525	NM_001256524	7625		NM_003426	ENSG00000185252	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
164098	chr3	56608221	56608850	+	0	NA	intron (NR_148366, intron 11 of 18)	L1PBa1|LINE|L1	51360	NM_001141947	285331		NM_001012506	ENSG00000180376	CCDC66	-	coiled-coil domain containing 66	protein-coding
44700	chr11	111538871	111539030	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-1330	NM_001318799	143903		NM_178834	ENSG00000204381	LAYN	-	layilin	protein-coding
98407	chr17	46589971	46591100	+	0	NA	promoter-TSS (NM_006178).3	promoter-TSS (NM_006178).3	-134	NR_040116	4905		NM_006178	ENSG00000073969	NSF	DEE96|SEC18|SKD2	N-ethylmaleimide sensitive factor, vesicle fusing ATPase	protein-coding
6468	chr1	28287171	28287530	+	0	NA	Intergenic	LTR16|LTR|ERVL	27832	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
234351	chrX	15349071	15349330	+	0	NA	intron (NR_037859, intron 13 of 14)	L3|LINE|CR1	-13646	NR_033835	5277		NM_002641	ENSG00000165195	PIGA	GPI3|MCAHS2|NEDEPH|PIG-A|PNH1	phosphatidylinositol glycan anchor biosynthesis class A	protein-coding
51052	chr12	49795001	49795980	+	0	NA	exon (NM_001368048, exon 9 of 14)	exon (NM_001368048, exon 9 of 14)	32923	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
167313	chr3	128725841	128727400	+	0	NA	intron (NM_004637, intron 1 of 5)	CpG	437	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
170211	chr3	184151371	184151730	+	0	NA	Intergenic	HAL1|LINE|L1	-3827	NM_004423	1857		NM_004423	ENSG00000161202	DVL3	DRS3	dishevelled segment polarity protein 3	protein-coding
150023	chr21	37244401	37245200	+	0	NA	intron (NM_006052, intron 1 of 7)	L1ME1|LINE|L1	22534	NM_006052	10311		NM_006052	ENSG00000157538	VPS26C	DCRA|DSCR3|DSCRA	VPS26 endosomal protein sorting factor C	protein-coding
23243	chr1	227790201	227790400	+	0	NA	non-coding (NR_168380, exon 2 of 2)	non-coding (NR_168380, exon 2 of 2)	1780	NR_168384	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
149965	chr21	36403601	36404200	+	0	NA	intron (NM_005441, intron 8 of 13)	intron (NM_005441, intron 8 of 13)	18508	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
182412	chr5	61345651	61345950	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	13542	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
115876	chr19	16568051	16568450	+	0	NA	intron (NM_024881, intron 2 of 5)	intron (NM_024881, intron 2 of 5)	4165	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
75755	chr15	68383401	68383750	+	0	NA	intron (NM_001004439, intron 2 of 29)	intron (NM_001004439, intron 2 of 29)	48588	NM_001004439	22801		NM_012211	ENSG00000137809	ITGA11	HsT18964	integrin subunit alpha 11	protein-coding
49287	chr12	19834051	19834350	+	0	NA	Intergenic	Intergenic	-180485	NR_040098	100506393		NR_040098	ENSG00000256287	LINC02398	-	long intergenic non-protein coding RNA 2398	ncRNA
187541	chr5	142749451	142749630	+	0	NA	intron (NR_110558, intron 1 of 3)	MSTB1|LTR|ERVL-MaLR	3940	NR_110558	101926975		NR_110558	ENSG00000236714	LINC01844	-	long intergenic non-protein coding RNA 1844	ncRNA
39219	chr11	57597821	57598080	+	0	NA	promoter-TSS (NM_001032295)	promoter-TSS (NM_001032295)	-261	NM_001032295	710		NM_000062	ENSG00000149131	SERPING1	C1IN|C1INH|C1NH|HAE1|HAE2	serpin family G member 1	protein-coding
177784	chr4	122930821	122931300	+	0	NA	intron (NM_001317799, intron 3 of 10)	intron (NM_001317799, intron 3 of 10)	7982	NM_001345856	166378		NM_145207	ENSG00000145375	AFG2A	AFG2|EHLMRS|NEDHSB|SPAF|SPATA5	AFG2 AAA ATPase homolog A	protein-coding
100851	chr17	64145021	64147500	+	0	NA	promoter-TSS (NR_002995)	promoter-TSS (NR_002995)	-79	NR_002995	677842		NR_002995	ENSG00000277887	SNORA50C	ACA62|SNORA76|SNORA76C	small nucleolar RNA, H/ACA box 50C	snoRNA
154545	chr22	36165721	36166500	+	0	NA	promoter-TSS (NM_145642)	promoter-TSS (NM_145642)	67	NM_145642	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
60969	chr13	46600671	46600830	+	0	NA	intron (NM_015116, intron 1 of 18)	intron (NM_015116, intron 1 of 18)	47580	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
9772	chr1	53427671	53427900	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	12235	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
79429	chr16	702521	702780	+	0	NA	intron (NM_153350, intron 1 of 5)	intron (NM_153350, intron 1 of 5)	3151	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
105938	chr18	3596511	3597480	+	0	NA	non-coding (NR_024101, exon 3 of 3)	non-coding (NR_024101, exon 3 of 3)	2881	NR_024101	649446		NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
51544	chr12	52372601	52372950	+	0	NA	Intergenic	Intergenic	-5294	NM_002283	3891		NM_002283	ENSG00000135443	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
163556	chr3	51719051	51719550	+	0	NA	TTS (NM_001349116)	TTS (NM_001349116)	12232	NM_001349117	2912		NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate metabotropic receptor 2	protein-coding
10583	chr1	67342101	67343080	+	0	NA	intron (NM_001374259, intron 9 of 16)	intron (NM_001374259, intron 9 of 16)	34717	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
175393	chr4	70759301	70759930	+	0	NA	intron (NM_001345840, intron 2 of 13)	L1MA5|LINE|L1	25205	NM_001345840	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
227736	chr9	93063001	93063200	+	0	NA	intron (NM_001287007, intron 1 of 2)	intron (NM_001287007, intron 1 of 2)	4399	NM_001287007	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
67376	chr14	69768751	69769100	+	0	NA	intron (NM_001039465, intron 4 of 7)	intron (NM_001039465, intron 4 of 7)	-1212	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
92750	chr17	14427021	14427280	+	0	NA	Intergenic	L2b|LINE|L2	123410	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
159850	chr3	16516651	16517500	+	0	NA	Intergenic	Intergenic	-3376	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
2581	chr1	9822701	9823300	+	0	NA	intron (NM_014944, intron 1 of 17)	CpG	965	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
211532	chr7	105355271	105355630	+	0	NA	intron (NM_001350742, intron 2 of 16)	AluJb|SINE|Alu	33471	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
62380	chr13	99254721	99255730	+	0	NA	exon (NM_001098200, exon 2 of 2)	exon (NM_001098200, exon 2 of 2)	3203	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
71104	chr14	104890151	104890450	+	0	NA	intron (NM_001112726, intron 13 of 18)	(TGGA)n|Simple_repeat|Simple_repeat	24986	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
12022	chr1	96762471	96762950	+	0	NA	intron (NM_001300986, intron 3 of 13)	SVA_D|Retroposon|SVA	40072	NR_125356	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
233135	chr9	137153571	137153950	+	0	NA	intron (NM_007327, intron 4 of 19)	(CATACA)n|Simple_repeat|Simple_repeat	14606	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
191819	chr6	14722721	14723080	+	0	NA	Intergenic	Intergenic	-437446	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
66225	chr14	61327001	61327500	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	5807	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
222317	chr8	133499901	133500700	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	71587	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
86613	chr16	67391251	67392030	+	0	NA	intron (NM_015964, intron 1 of 3)	intron (NM_015964, intron 1 of 3)	1858	NM_015964	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
77387	chr15	82999971	83000740	+	0	NA	3' UTR (NM_144597, exon 4 of 4)	3' UTR (NM_144597, exon 4 of 4)	11284	NR_027650	123207		NM_144597	ENSG00000169609	C15orf40	-	chromosome 15 open reading frame 40	protein-coding
117985	chr19	33441301	33441500	+	0	NA	intron (NM_001166056, intron 7 of 12)	intron (NM_001166056, intron 7 of 12)	66876	NM_001252296	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
216720	chr8	22370771	22370930	+	0	NA	intron (NM_001135153, intron 1 of 8)	intron (NM_001135153, intron 1 of 8)	3312	NM_001135153	23516		NM_015359	ENSG00000104635	SLC39A14	HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
107802	chr18	51184421	51184800	+	0	NA	intron (NM_016626, intron 1 of 1)	AluJb|SINE|Alu	13071	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
219523	chr8	74853551	74853650	+	0	NA	3' UTR (NM_001324403, exon 6 of 6)	3' UTR (NM_001324403, exon 6 of 6)	29066	NM_015886	51050		NM_015886	ENSG00000137558	PI15	CRISP8|P24TI|P25TI	peptidase inhibitor 15	protein-coding
100965	chr17	64510521	64510950	+	0	NA	intron (NM_138363, intron 3 of 19)	AluJb|SINE|Alu	3758	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
89980	chr16	89837421	89838380	+	0	NA	intron (NM_032451, intron 1 of 14)	intron (NM_032451, intron 1 of 14)	9425	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
179414	chr4	184263121	184263380	+	0	NA	Intergenic	Intergenic	-45377	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
45728	chr11	119108101	119109230	+	0	NA	intron (NM_001382611, intron 1 of 12)	intron (NM_001382611, intron 1 of 12)	1321	NM_014807	9854		NM_014807	ENSG00000172375	C2CD2L	DLNB23|TMEM24	C2CD2 like	protein-coding
133707	chr2	127354001	127354200	+	0	NA	intron (NM_001371911, intron 1 of 16)	SVA_D|Retroposon|SVA	-10871	NM_006609	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
203709	chr7	1049051	1049780	+	0	NA	intron (NM_001303473, intron 1 of 1)	MIR|SINE|MIR	4869	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
93098	chr17	17666001	17666480	+	0	NA	Intergenic	Intergenic	11448	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
64069	chr14	22561461	22563000	+	0	NA	Intergenic	AluJo|SINE|Alu	-5168	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
177683	chr4	121800621	121801980	+	0	NA	promoter-TSS (NM_001034194)	promoter-TSS (NM_001034194)	-23	NM_005033	5393		NM_005033	ENSG00000123737	EXOSC9	PCH1D|PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
196391	chr6	43277221	43277480	+	0	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	-20910	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
198889	chr6	109482601	109484400	+	0	NA	promoter-TSS (NM_001164313)	promoter-TSS (NM_001164313)	-263	NM_001164313	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
149851	chr21	35050941	35052100	+	0	NA	Intergenic	Intergenic	-2218	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
188246	chr5	151051621	151052500	+	0	NA	intron (NM_006058, intron 7 of 17)	intron (NM_006058, intron 7 of 17)	13071	NM_001258455	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
168535	chr3	144429771	144430000	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	456804	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
83124	chr16	22534901	22535680	+	0	NA	exon (NM_001135865, exon 7 of 7)	exon (NM_001135865, exon 7 of 7)	-10408	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
162117	chr3	46929301	46930030	+	0	NA	intron (NM_144716, intron 3 of 7)	L1ME4a|LINE|L1	46836	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
13179	chr1	112464501	112465150	+	0	NA	Intergenic	Intergenic	-1716	NM_001291880	7482		NM_004185	ENSG00000134245	WNT2B	WNT13	Wnt family member 2B	protein-coding
710	chr1	1426621	1426880	+	0	NA	intron (NM_001146685, intron 1 of 1)	intron (NM_001146685, intron 1 of 1)	622	NM_001146685	643965		NM_001146685	ENSG00000205116	TMEM88B	-	transmembrane protein 88B	protein-coding
4510	chr1	21775921	21776480	+	0	NA	intron (NM_001350166, intron 1 of 26)	intron (NM_001350166, intron 1 of 26)	6949	NM_001350164	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
35235	chr11	838251	838700	+	0	NA	3' UTR (NM_004357, exon 9 of 9)	3' UTR (NM_004357, exon 9 of 9)	4054	NM_021128	5441		NM_021128	ENSG00000177700	POLR2L	RBP10|RPABC5|RPB10|RPB10beta|RPB7.6|hRPB7.6	RNA polymerase II, I and III subunit L	protein-coding
205277	chr7	8296051	8296500	+	0	NA	intron (NR_125740, intron 3 of 5)	intron (NR_125740, intron 3 of 5)	-33663	NM_004968	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
64603	chr14	30546951	30547050	+	0	NA	intron (NR_151720, intron 3 of 3)	LTR12C|LTR|ERV1	-12123	NM_001308097	55632		NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
135279	chr2	159903051	159904100	+	0	NA	intron (NM_001198760, intron 1 of 37)	intron (NM_001198760, intron 1 of 37)	1181	NM_002349	4065		NM_002349	ENSG00000054219	LY75	CD205|CLEC13B|DEC-205|GP200-MR6|LY-75	lymphocyte antigen 75	protein-coding
190604	chr5	181166621	181167250	+	0	NA	Intergenic	L1MB4|LINE|L1	11992	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
175099	chr4	54227751	54228350	+	0	NA	Intergenic	Intergenic	-1243	NM_001347828	5156		NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
102969	chr17	76714601	76715500	+	0	NA	3' UTR (NM_001081461, exon 7 of 7)	3' UTR (NM_001081461, exon 7 of 7)	-4085	NM_001008529	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
232967	chr9	136963821	136964700	+	0	NA	Intergenic	Intergenic	-5152	NR_157392	101928638		NM_001101674		LINC02692	C9orf141|PRR31	long intergenic non-protein coding RNA 2692	ncRNA
222084	chr8	130355951	130356330	+	0	NA	intron (NM_001362924, intron 3 of 30)	(ATTAAC)n|Simple_repeat|Simple_repeat	-59607	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
186853	chr5	139469371	139469700	+	0	NA	Intergenic	Intergenic	-1469	NM_001365197	111064649		NM_001365197	ENSG00000283288	SMIM33	-	small integral membrane protein 33	protein-coding
85381	chr16	50281571	50282700	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	-10481	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
81389	chr16	5094101	5094500	+	0	NA	intron (NM_201598, intron 2 of 6)	AluSx|SINE|Alu	3495	NM_201400	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
224815	chr9	26890571	26890930	+	0	NA	intron (NM_024828, intron 1 of 5)	AluY|SINE|Alu	2052	NM_024828	79886		NM_024828	ENSG00000120159	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
65497	chr14	51882171	51882330	+	0	NA	intron (NM_053064, intron 2 of 3)	L1MB5|LINE|L1	21638	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
6591	chr1	28763451	28763750	+	0	NA	intron (NM_016258, intron 4 of 4)	AluSc8|SINE|Alu	26660	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
190954	chr6	2914451	2915150	+	0	NA	Intergenic	Intergenic	-11491	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
1050	chr1	1893321	1893850	+	0	NA	TTS (NR_168263)	TTS (NR_168263)	2405	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
50445	chr12	47710151	47710250	+	0	NA	3' UTR (NM_001172439, exon 10 of 10)	3' UTR (NM_001172439, exon 10 of 10)	-4139	NM_001146075	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
175142	chr4	55402251	55402350	+	0	NA	intron (NM_018475, intron 1 of 5)	intron (NM_018475, intron 1 of 5)	6343	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
137162	chr2	191094701	191095100	+	0	NA	intron (NM_003151, intron 3 of 23)	L1PA6|LINE|L1	56094	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
201750	chr6	149931301	149931830	+	0	NA	Intergenic	L1PA16|LINE|L1	-2948	NR_134598	105378052		NR_134598	ENSG00000293239	LOC105378052	-	uncharacterized LOC105378052	ncRNA
157741	chr22	46613651	46613750	+	0	NA	intron (NM_001366660, intron 1 of 17)	intron (NM_001366660, intron 1 of 17)	-6686	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
150329	chr21	42063511	42064880	+	0	NA	intron (NM_001199527, intron 1 of 21)	intron (NM_001199527, intron 1 of 21)	1318	NM_001199528	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
122287	chr19	49085001	49086430	+	0	NA	intron (NM_003089, intron 1 of 9)	CpG	264	NM_001301069	6625		NM_003089	ENSG00000104852	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein U1 subunit 70	protein-coding
164066	chr3	53886251	53886550	+	0	NA	intron (NM_021237, intron 3 of 4)	AluSc|SINE|Alu	-4248	NM_022899	93973		NM_022899	ENSG00000113812	ACTR8	ARP8|INO80N|hArp8	actin related protein 8	protein-coding
66672	chr14	63923101	63923750	+	0	NA	intron (NM_015180, intron 2 of 114)	intron (NM_015180, intron 2 of 114)	70421	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
78775	chr15	99277371	99277530	+	0	NA	intron (NM_144598, intron 3 of 9)	L1MC4|LINE|L1	19925	NR_073383	7190		NR_073383	ENSG00000259706	HSP90B2P	GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1	heat shock protein 90 beta family member 2, pseudogene	pseudo
192180	chr6	17673271	17673880	+	0	NA	intron (NM_001278209, intron 5 of 22)	L1ME1|LINE|L1	-32555	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
14450	chr1	144407851	144408030	+	0	NA	Intergenic	Intergenic	-4636	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
190703	chr6	221521	222100	+	0	NA	Intergenic	Intergenic	-16326	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
227113	chr9	85900521	85900800	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-40482	NM_001321881	60560		NM_021929	ENSG00000135040	NAA35	EGAP|MAK10|MAK10P|bA379P1.1	N-alpha-acetyltransferase 35, NatC auxiliary subunit	protein-coding
138900	chr2	218010051	218010880	+	0	NA	Intergenic	CpG	-24469	NR_034176	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
172036	chr4	1000571	1000730	+	0	NA	exon (NM_000203, exon 3 of 14)	exon (NM_000203, exon 3 of 14)	940	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
167019	chr3	126343051	126343230	+	0	NA	3' UTR (NM_014079, exon 3 of 3)	3' UTR (NM_014079, exon 3 of 3)	14268	NM_014079	28999		NM_014079	ENSG00000163884	KLF15	KKLF	KLF transcription factor 15	protein-coding
156151	chr22	40182021	40182480	+	0	NA	intron (NM_015088, intron 1 of 20)	AluSx3|SINE|Alu	4325	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
78614	chr15	94051571	94051930	+	0	NA	intron (NR_120320, intron 2 of 8)	(AC)n|Simple_repeat|Simple_repeat	56188	NR_120320	101927112		NR_120320	ENSG00000259724	LINC01581	-	long intergenic non-protein coding RNA 1581	ncRNA
20869	chr1	202127971	202128750	+	0	NA	exon (NM_004767, exon 2 of 2)	exon (NM_004767, exon 2 of 2)	5443	NM_004767	9283		NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2|ETBRLP2	G protein-coupled receptor 37 like 1	protein-coding
97460	chr17	43702351	43702450	+	0	NA	Intergenic	AluJo|SINE|Alu	-40478	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
97108	chr17	42488101	42488500	+	0	NA	intron (NM_001378535, intron 10 of 22)	intron (NM_001378535, intron 10 of 22)	-6473	NR_049845	100847030		NR_049845	ENSG00000264314	MIR548AT	-	microRNA 548at	ncRNA
184745	chr5	109725321	109725580	+	0	NA	intron (NM_002372, intron 3 of 21)	MER115|DNA|hAT-Tip100	36084	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
19854	chr1	183023871	183024600	+	0	NA	intron (NM_002293, intron 1 of 27)	CpG	815	NM_002293	3915		NM_002293	ENSG00000135862	LAMC1	LAMB2	laminin subunit gamma 1	protein-coding
234678	chrX	20263051	20264050	+	0	NA	intron (NM_004586, intron 1 of 21)	intron (NM_004586, intron 1 of 21)	3359	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
238156	chrX	136780251	136780350	+	0	NA	intron (NM_004840, intron 1 of 21)	intron (NM_004840, intron 1 of 21)	632	NM_004840	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
146150	chr20	48691571	48691930	+	0	NA	intron (NM_020820, intron 8 of 39)	L1ME3B|LINE|L1	136249	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
124583	chr2	732071	732550	+	0	NA	Intergenic	CpG	-54904	NM_152834	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
138650	chr2	212567671	212567850	+	0	NA	Intergenic	Intergenic	-28958	NM_005235	2066		NM_005235	ENSG00000178568	ERBB4	ALS19|HER4|p180erbB4	erb-b2 receptor tyrosine kinase 4	protein-coding
105074	chr17	82096371	82096530	+	0	NA	5' UTR (NM_004104, exon 2 of 43)	5' UTR (NM_004104, exon 2 of 43)	1786	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
228061	chr9	96071501	96071780	+	0	NA	intron (NR_033838, intron 1 of 8)	intron (NR_033838, intron 1 of 8)	5801	NR_033838	158435		NM_138497		LOC158435	-	uncharacterized LOC158435	ncRNA
203631	chr7	962751	962850	+	0	NA	Intergenic	Intergenic	-7393	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
202062	chr6	154223621	154224300	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	106121	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
97495	chr17	43900101	43901300	+	0	NA	promoter-TSS (NM_001278376)	promoter-TSS (NM_001278376)	-76	NM_001278376	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
97801	chr17	44775401	44777230	+	0	NA	intron (NM_001318933, intron 18 of 26)	intron (NM_001318933, intron 18 of 26)	17327	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
70598	chr14	102780901	102782330	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	4136	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
120006	chr19	41931201	41931750	+	0	NA	Intergenic	Intergenic	2655	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
154827	chr22	37061001	37061650	+	0	NA	intron (NM_001282684, intron 7 of 8)	intron (NM_001282684, intron 7 of 8)	9589	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
212250	chr7	121438021	121439300	+	0	NA	Intergenic	L1P1|LINE|L1	-42292	NM_001040020	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
147740	chr20	62401801	62402000	+	0	NA	intron (NM_031215, intron 1 of 9)	intron (NM_031215, intron 1 of 9)	5383	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
80019	chr16	1931301	1931500	+	0	NA	Intergenic	LTR5A|LTR|ERVK	11799	NM_016332	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
106463	chr18	14086501	14086700	+	0	NA	intron (NR_033354, intron 1 of 5)	intron (NR_033354, intron 1 of 5)	45835	NM_145287	162655		NM_145287	ENSG00000175322	ZNF519	HsT2362	zinc finger protein 519	protein-coding
34280	chr10	131909001	131909480	+	0	NA	intron (NR_033191, intron 2 of 9)	L2|LINE|L2	8232	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
185607	chr5	131419751	131419850	+	0	NA	Intergenic	L1M5|LINE|L1	155747	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
237789	chrX	129790221	129790480	+	0	NA	intron (NM_018990, intron 3 of 7)	MER63B|DNA|hAT-Blackjack	10401	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
165773	chr3	105772551	105773980	+	0	NA	intron (NR_135806, intron 4 of 20)	L1PB2|LINE|L1	94326	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
140417	chr2	233107071	233107230	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	46808	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
158242	chr22	50297201	50297400	+	0	NA	intron (NM_001376879, intron 1 of 38)	intron (NM_001376879, intron 1 of 38)	3035	NM_001376883	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
107787	chr18	51130151	51130250	+	0	NA	Intergenic	AluSx1|SINE|Alu	67481	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
110767	chr19	2390971	2391930	+	0	NA	intron (NM_182973, intron 2 of 17)	intron (NM_182973, intron 2 of 17)	-4727	NR_169739	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
58486	chr12	132155351	132156100	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	11268	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
90131	chr16	90170371	90170930	+	0	NA	intron (NR_126161, intron 3 of 3)	intron (NR_126161, intron 3 of 3)	68386	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
115439	chr19	15319371	15320580	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	12564	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
87122	chr16	68782271	68782650	+	0	NA	intron (NM_004360, intron 2 of 15)	MIRb|SINE|MIR	45168	NM_001317185	999		NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
133882	chr2	129980371	129980530	+	0	NA	promoter-TSS (NR_036537)	promoter-TSS (NR_036537)	22	NR_036537	100131320		NR_036537	ENSG00000290615	RAB6C-AS1	-	RAB6C antisense RNA 1	ncRNA
1656	chr1	3859501	3859830	+	0	NA	intron (NR_104222, intron 2 of 7)	intron (NR_104222, intron 2 of 7)	2189	NR_135151	1677		NM_004402	ENSG00000169598	DFFB	CAD|CPAN|DFF-40|DFF2|DFF40	DNA fragmentation factor subunit beta	protein-coding
9321	chr1	46545551	46545850	+	0	NA	TTS (NM_001322255)	TTS (NM_001322255)	5515	NM_001097611	148930		NM_182516	ENSG00000162456	KNCN	Kino|L5	kinocilin	protein-coding
135122	chr2	157420371	157421350	+	0	NA	intron (NM_004288, intron 6 of 7)	intron (NM_004288, intron 6 of 7)	23229	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
123565	chr19	54444571	54445330	+	0	NA	non-coding (NR_126418, exon 3 of 3)	non-coding (NR_126418, exon 3 of 3)	4088	NR_126418	104355426		NR_126418	ENSG00000226696	LENG8-AS1	-	LENG8 antisense RNA 1	ncRNA
138365	chr2	203947571	203947730	+	0	NA	intron (NM_012092, intron 1 of 4)	intron (NM_012092, intron 1 of 4)	10887	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
68764	chr14	91064701	91065300	+	0	NA	intron (NM_001358312, intron 1 of 13)	L1MC4a|LINE|L1	-4351	NM_182398	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
29616	chr10	71764701	71765630	+	0	NA	intron (NM_022153, intron 1 of 6)	intron (NM_022153, intron 1 of 6)	8355	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
39707	chr11	61750051	61751300	+	0	NA	Intergenic	AluJr|SINE|Alu	-1961	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
185957	chr5	133051071	133053080	+	0	NA	promoter-TSS (NM_002154)	promoter-TSS (NM_002154)	62	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
151943	chr22	19117151	19117680	+	0	NA	intron (NM_001184781, intron 1 of 9)	intron (NM_001184781, intron 1 of 9)	4997	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
109591	chr19	918571	919000	+	0	NA	intron (NM_032551, intron 2 of 4)	CpG-12951	1452	NM_032551	84634		NM_032551	ENSG00000116014	KISS1R	AXOR12|CPPB1|GPR54|HH8|HOT7T175|KISS-1R	KISS1 receptor	protein-coding
193311	chr6	30104521	30104780	+	0	NA	promoter-TSS (NR_126470)	promoter-TSS (NR_126470)	-590	NR_126470	104533120		NR_126470	ENSG00000231226	TRIM31-AS1	-	TRIM31 antisense RNA 1	ncRNA
219090	chr8	65840571	65843280	+	0	NA	5' UTR (NM_001242318, exon 1 of 13)	5' UTR (NM_001242318, exon 1 of 13)	139	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
90838	chr17	2339321	2340950	+	0	NA	intron (NM_001346700, intron 1 of 22)	AluSc5|SINE|Alu	2634	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
159978	chr3	17860821	17861080	+	0	NA	Intergenic	L1HS|LINE|L1	-101602	NR_161333	339862		NR_046199		BALR6	BALR-6	B-cell acute lymphoblastic leukemia associated long RNA 6	ncRNA
112837	chr19	7531271	7531430	+	0	NA	intron (NM_020533, intron 12 of 13)	AluSx|SINE|Alu	-2814	NM_006702	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
15987	chr1	151948971	151949750	+	0	NA	Intergenic	Intergenic	-39849	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
49549	chr12	26768951	26769050	+	0	NA	intron (NM_002223, intron 2 of 56)	(AC)n|Simple_repeat|Simple_repeat	64194	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
4831	chr1	23626921	23628280	+	0	NA	intron (NR_167902, intron 1 of 3)	L2a|LINE|L2	266	NR_167904	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
60747	chr13	44575301	44576250	+	0	NA	promoter-TSS (NR_038381)	promoter-TSS (NR_038381)	-121	NR_038381	641467		NR_038381	ENSG00000278156	TSC22D1-AS1	-	TSC22D1 antisense RNA 1	ncRNA
84919	chr16	31227571	31227730	+	0	NA	3' UTR (NM_001008274, exon 7 of 7)	3' UTR (NM_001008274, exon 7 of 7)	-10515	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
152416	chr22	20575021	20575650	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	67288	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
200011	chr6	129446421	129446680	+	0	NA	intron (NM_000426, intron 45 of 64)	(AGGGG)n|Simple_repeat|Simple_repeat	263627	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
112496	chr19	6457721	6458300	+	0	NA	intron (NM_024103, intron 2 of 9)	intron (NM_024103, intron 2 of 9)	1782	NM_024103	79085		NM_024103	ENSG00000125648	SLC25A23	APC2|MCSC2|SCAMC3|SCaMC-3	solute carrier family 25 member 23	protein-coding
110510	chr19	2060641	2062980	+	0	NA	Intergenic	CpG	-10566	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
47956	chr12	6856621	6856880	+	0	NA	non-coding (NR_168449, exon 6 of 20)	non-coding (NR_168449, exon 6 of 20)	4600	NR_168456	8078		NM_003481	ENSG00000111667	USP5	ISOT	ubiquitin specific peptidase 5	protein-coding
150590	chr21	43315201	43315600	+	0	NA	Intergenic	Intergenic	16639	NR_103713	100126693		NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
198253	chr6	99424711	99426350	+	0	NA	promoter-TSS (NR_136326)	promoter-TSS (NR_136326)	-185	NM_001322413	25957		NM_015491	ENSG00000132424	PNISR	C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2	PNN interacting serine and arginine rich protein	protein-coding
165674	chr3	101864571	101865480	+	0	NA	Intergenic	AluSz|SINE|Alu	15511	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
38078	chr11	35195621	35196580	+	0	NA	intron (NM_001202556, intron 5 of 7)	intron (NM_001202556, intron 5 of 7)	33150	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
32402	chr10	102439701	102439900	+	0	NA	Intergenic	AluY|SINE|Alu	3288	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B|mir-146b	microRNA 146b	ncRNA
191602	chr6	12059421	12059680	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	47238	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
109417	chr19	692121	692580	+	0	NA	intron (NM_214710, intron 2 of 4)	AluSx|SINE|Alu	3102	NM_001308209	400668		NM_214710	ENSG00000185198	PRSS57	NSP4|PRSSL1|UNQ782	serine protease 57	protein-coding
239419	chrY	56679301	56679800	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-274705	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
211113	chr7	102515071	102515700	+	0	NA	intron (NM_001367767, intron 1 of 20)	MIRb|SINE|MIR	2392	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
55795	chr12	108638271	108638430	+	0	NA	Intergenic	Intergenic	2540	NR_039717	100616240		NR_039717	ENSG00000284388	MIR4496	-	microRNA 4496	ncRNA
194082	chr6	31887901	31888180	+	0	NA	intron (NM_001318833, intron 13 of 27).6	intron (NM_001318833, intron 13 of 27).6	8949	NM_001318833	10919		NM_006709	ENSG00000204371	EHMT2	BAT8|C6orf30|G9A|GAT8|KMT1C|NG36	euchromatic histone lysine methyltransferase 2	protein-coding
104666	chr17	81490071	81490600	+	0	NA	Intergenic	Intergenic	22464	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
99612	chr17	50551371	50551530	+	0	NA	intron (NM_022827, intron 12 of 16)	intron (NM_022827, intron 12 of 16)	4276	NM_022827	64847		NM_022827	ENSG00000006282	SPATA20	HEL-S-98|SSP411|Tisp78	spermatogenesis associated 20	protein-coding
71092	chr14	104873671	104873830	+	0	NA	intron (NM_001112726, intron 2 of 18)	intron (NM_001112726, intron 2 of 18)	8436	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
204160	chr7	2407971	2408130	+	0	NA	intron (NM_018641, intron 1 of 1)	intron (NM_018641, intron 1 of 1)	4439	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
107619	chr18	48932921	48933400	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	9647	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
237617	chrX	124005301	124005500	+	0	NA	intron (NM_001282418, intron 2 of 33)	L1MD2|LINE|L1	43694	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
95843	chr17	38815651	38816450	+	0	NA	intron (NR_073428, intron 2 of 10)	Charlie29a|DNA|hAT-Charlie	9271	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
191952	chr6	16132451	16133300	+	0	NA	intron (NM_013262, intron 2 of 6)	intron (NM_013262, intron 2 of 6)	3789	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
140591	chr2	233380971	233382030	+	0	NA	intron (NM_152879, intron 1 of 29)	MIRb|SINE|MIR	-6654	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
26809	chr10	23446471	23446830	+	0	NA	Intergenic	Intergenic	7575	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
123472	chr19	54164521	54165480	+	0	NA	intron (NM_144686, intron 6 of 14).4	intron (NM_144686, intron 6 of 14).4	-5279	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
218183	chr8	41991301	41991500	+	0	NA	intron (NM_001305878, intron 2 of 13)	L1ME3A|LINE|L1	-60350	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
215108	chr7	155305071	155305430	+	0	NA	intron (NM_198336, intron 5 of 5)	intron (NM_198336, intron 5 of 5)	7372	NM_005542	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
55760	chr12	108526871	108527230	+	0	NA	intron (NM_014706, intron 15 of 18)	intron (NM_014706, intron 15 of 18)	11773	NM_007076	11153		NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain protein adenylyltransferase	protein-coding
112468	chr19	6390751	6391750	+	0	NA	intron (NM_002096, intron 3 of 12)	intron (NM_002096, intron 3 of 12)	-1547	NR_106945	102465533		NR_106945	ENSG00000274390	MIR6885	hsa-mir-6885	microRNA 6885	ncRNA
142718	chr20	8722371	8722630	+	0	NA	intron (NM_015192, intron 15 of 31)	intron (NM_015192, intron 15 of 31)	-108685	NR_004386	26767		NR_004386	ENSG00000201348	RNU105B	105B|E1-2	RNA, U105B small nucleolar	snoRNA
100300	chr17	59785221	59785700	+	0	NA	intron (NM_030938, intron 7 of 11)	AluSx1|SINE|Alu	-55806	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
21227	chr1	204153721	204154730	+	0	NA	TTS (NM_000537)	TTS (NM_000537)	-2181	NM_018208	55224		NM_018208	ENSG00000143845	ETNK2	EKI2|HMFT1716	ethanolamine kinase 2	protein-coding
50558	chr12	48103921	48104530	+	0	NA	intron (NM_001267594, intron 1 of 17)	AluSg|SINE|Alu	-1028	NM_001354741	5213		NM_000289	ENSG00000152556	PFKM	ATP-PFK|GSD7|PFK-1|PFK-A|PFK1|PFKA|PFKX|PPP1R122	phosphofructokinase, muscle	protein-coding
59647	chr13	28204151	28204250	+	0	NA	intron (NM_175854, intron 5 of 18)	intron (NM_175854, intron 5 of 18)	-65026	NR_029383	100288730		NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
196846	chr6	47446901	47447100	+	0	NA	Intergenic	Intergenic	-30789	NM_012120	23607		NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
202236	chr6	156828401	156828700	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-48819	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
231265	chr9	130005101	130005750	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluSc8|SINE|Alu	37764	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
123104	chr19	51593301	51593500	+	0	NA	TTS (NM_007147)	TTS (NM_007147)	980	NR_034159	729975		NR_034159		LINC01530	-	long intergenic non-protein coding RNA 1530	ncRNA
66909	chr14	65291851	65292680	+	0	NA	Intergenic	Intergenic	42918	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
210534	chr7	100234821	100235230	+	0	NA	intron (NR_166147, intron 1 of 4)	THE1B|LTR|ERVL-MaLR	15777	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
113151	chr19	8342551	8343800	+	0	NA	promoter-TSS (NM_198471)	promoter-TSS (NM_198471)	87	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
14617	chr1	145424571	145426000	+	0	NA	Intergenic	CpG	-19507	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
8506	chr1	40861171	40863200	+	0	NA	5' UTR (NM_133467, exon 1 of 1)	5' UTR (NM_133467, exon 1 of 1)	178	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
22550	chr1	222475201	222475400	+	0	NA	Intergenic	Intergenic	72804	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
13867	chr1	117754021	117754380	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	148152	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
186289	chr5	134553551	134553650	+	0	NA	intron (NM_001289985, intron 4 of 11)	AluSg|SINE|Alu	27492	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
180461	chr5	10695901	10696300	+	0	NA	intron (NM_004394, intron 2 of 3)	intron (NM_004394, intron 2 of 3)	65134	NM_004394	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
5542	chr1	25822901	25823680	+	0	NA	non-coding (NR_024498, exon 1 of 1)	non-coding (NR_024498, exon 1 of 1)	316	NR_024498	646471		NR_024498		LOC646471	-	uncharacterized LOC646471	ncRNA
235094	chrX	40281351	40281850	+	0	NA	intron (NR_110386, intron 1 of 2)	MIRb|SINE|MIR	18683	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
164232	chr3	56985851	56986350	+	0	NA	intron (NM_001377411, intron 1 of 11)	intron (NM_001377411, intron 1 of 11)	46060	NR_046572	100874200		NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
35058	chr11	598901	599100	+	0	NA	intron (NM_001286582, intron 9 of 17)	L1MC4|LINE|L1	16950	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
8734	chr1	42688501	42689550	+	0	NA	intron (NM_004559, intron 2 of 7)	Tigger2b_Pri|DNA|TcMar-Tigger	5889	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
180790	chr5	32260751	32261250	+	0	NA	intron (NM_001294344, intron 7 of 13)	AluSx1|SINE|Alu	51939	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
104698	chr17	81533701	81534800	+	0	NA	intron (NM_012418, intron 1 of 4)	intron (NM_012418, intron 1 of 4)	5873	NM_012418	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
172262	chr4	1405201	1405400	+	0	NA	intron (NM_001290079, intron 1 of 1)	CpG	1142	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
234800	chrX	24019351	24020700	+	0	NA	intron (NM_030624, intron 2 of 3)	intron (NM_030624, intron 2 of 3)	7161	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
163752	chr3	52360851	52361150	+	0	NA	intron (NM_015512, intron 28 of 77)	intron (NM_015512, intron 28 of 77)	44681	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
46119	chr11	122979801	122980700	+	0	NA	intron (NM_001098169, intron 1 of 2)	intron (NM_001098169, intron 1 of 2)	1584	NM_001098169	390259		NM_001098169	ENSG00000188909	BSX	BSX1	brain specific homeobox	protein-coding
36187	chr11	3222771	3223330	+	0	NA	TTS (NR_027138)	TTS (NR_027138)	-4237	NM_001164377	386746		NM_001164377	ENSG00000182170	MRGPRG	GPR169|MRGG	MAS related GPR family member G	protein-coding
114335	chr19	12141021	12141600	+	0	NA	promoter-TSS (NM_021143)	promoter-TSS (NM_021143)	-960	NM_021143	7568		NM_021143	ENSG00000132010	ZNF20	KOX13	zinc finger protein 20	protein-coding
205299	chr7	11127171	11127400	+	0	NA	intron (NM_001007157, intron 17 of 17)	intron (NM_001007157, intron 17 of 17)	153413	NR_033436	9678		NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
227532	chr9	91681721	91682000	+	0	NA	Intergenic	CpG	-45515	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
135297	chr2	160252371	160252630	+	0	NA	Intergenic	Intergenic	19395	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
96444	chr17	40200221	40200650	+	0	NA	Intergenic	AluY|SINE|Alu	6838	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
72704	chr15	38631301	38632000	+	0	NA	Intergenic	Intergenic	-64948	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
20177	chr1	193038871	193039030	+	0	NA	intron (NM_001350842, intron 3 of 11)	AluJr4|SINE|Alu	18465	NR_135615	107397392		NR_135615	ENSG00000238754	SCARNA18B	-	small Cajal body-specific RNA 18B	ncRNA
149300	chr21	28834871	28835550	+	0	NA	Intergenic	L1PB1|LINE|L1	50157	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
211736	chr7	107167621	107169200	+	0	NA	promoter-TSS (NM_012257)	promoter-TSS (NM_012257)	-551	NM_001244262	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
175077	chr4	54093151	54094280	+	0	NA	Intergenic	MIRb|SINE|MIR	-6448	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
42829	chr11	72848901	72849180	+	0	NA	intron (NM_014824, intron 14 of 19)	intron (NM_014824, intron 14 of 19)	34629	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
125453	chr2	12111071	12111230	+	0	NA	intron (NR_110197, intron 3 of 3)	intron (NR_110197, intron 3 of 3)	-87980	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
91150	chr17	3761921	3762180	+	0	NA	intron (NM_002208, intron 3 of 30)	intron (NM_002208, intron 3 of 30)	38147	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
128915	chr2	64295751	64296050	+	0	NA	Intergenic	Intergenic	-44859	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
124055	chr19	55587021	55587780	+	0	NA	Intergenic	CpG	-6552	NM_152600	163033		NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding
81681	chr16	11183501	11183700	+	0	NA	Intergenic	Intergenic	72582	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
189264	chr5	172054721	172054980	+	0	NA	intron (NM_005990, intron 16 of 18)	intron (NM_005990, intron 16 of 18)	-48212	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
85689	chr16	56450451	56452100	+	0	NA	promoter-TSS (NM_001324359)	promoter-TSS (NM_001324359)	57	NM_007006	11051		NM_007006	ENSG00000167005	NUDT21	CFIM25|CPSF5	nudix hydrolase 21	protein-coding
2752	chr1	10681251	10681650	+	0	NA	intron (NM_017766, intron 4 of 15)	L2b|LINE|L2	115196	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
159034	chr3	11227301	11227830	+	0	NA	intron (NM_001098211, intron 1 of 1)	AluSx1|SINE|Alu	1584	NM_001098211	3269		NM_000861	ENSG00000196639	HRH1	H1-R|H1R|HH1R|hisH1	histamine receptor H1	protein-coding
121985	chr19	48505301	48505500	+	0	NA	intron (NM_001080434, intron 6 of 15)	AluSx|SINE|Alu	7789	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
5416	chr1	25545801	25546600	+	0	NA	intron (NM_015627, intron 1 of 8)	intron (NM_015627, intron 1 of 8)	2594	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
159301	chr3	12991451	12992150	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-4699	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
145815	chr20	45456671	45456850	+	0	NA	Intergenic	Intergenic	-12993	NM_006103	10406		NM_006103	ENSG00000101443	WFDC2	EDDM4|HE4|WAP5|dJ461P17.6	WAP four-disulfide core domain 2	protein-coding
133750	chr2	127523351	127523980	+	0	NA	intron (NM_017969, intron 2 of 13)	intron (NM_017969, intron 2 of 13)	2824	NM_017969	55677		NM_017969	ENSG00000163166	IWS1	-	interacts with SUPT6H, CTD assembly factor 1	protein-coding
168427	chr3	142450051	142450350	+	0	NA	intron (NM_001184, intron 46 of 46)	intron (NM_001184, intron 46 of 46)	-2138	NM_001282859	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
97962	chr17	45240051	45240380	+	0	NA	intron (NM_005892, intron 11 of 26)	L1MB7|LINE|L1	-7710	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
230585	chr9	128562271	128563030	+	0	NA	intron (NM_001375312, intron 2 of 57)	intron (NM_001375312, intron 2 of 57)	10063	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
18567	chr1	162835321	162835580	+	0	NA	Intergenic	Intergenic	33365	NM_178550	339512		NM_178550	ENSG00000185860	CCDC190	C1orf110	coiled-coil domain containing 190	protein-coding
28330	chr10	46541201	46541850	+	0	NA	TTS (NM_014696)	TTS (NM_014696)	14891	NM_014696	9721		NM_014696	ENSG00000204175	GPRIN2	GRIN2|KIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding
14952	chr1	147699821	147700650	+	0	NA	Intergenic	Intergenic	-29711	NR_136635	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
227655	chr9	92968051	92968500	+	0	NA	intron (NM_001369951, intron 1 of 17)	intron (NM_001369951, intron 1 of 17)	4268	NM_001369951	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
222732	chr8	141395901	141396450	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	4154	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
134230	chr2	134917821	134919750	+	0	NA	promoter-TSS (NM_001320748)	promoter-TSS (NM_001320748)	-37	NM_001241	905		NM_001241	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
208731	chr7	73432671	73434630	+	0	NA	promoter-TSS (NM_003508)	promoter-TSS (NM_003508)	-128	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
176991	chr4	105149521	105150130	+	0	NA	intron (NM_001127208, intron 1 of 10)	intron (NM_001127208, intron 1 of 10)	2949	NM_001127208	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
65264	chr14	49970751	49972080	+	0	NA	Intergenic	Intergenic	5016	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
235406	chrX	45710251	45710600	+	0	NA	Intergenic	Intergenic	-20663	NR_102268	392452		NR_102268		MFFP3	-	MFF pseudogene 3	pseudo
159807	chr3	16340151	16340550	+	0	NA	TTS (NM_001352983)	TTS (NM_001352983)	75138	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
71322	chr14	105396951	105397400	+	0	NA	3' UTR (NM_015197, exon 24 of 24)	3' UTR (NM_015197, exon 24 of 24)	-1363	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
132198	chr2	101998921	101999180	+	0	NA	promoter-TSS (NR_048564)	promoter-TSS (NR_048564)	89	NR_048564	7850		NM_004633	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor type 2	protein-coding
195993	chr6	41991671	41991830	+	0	NA	intron (NM_001136017, intron 1 of 4)	L1MA5A|LINE|L1	-49902	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
38103	chr11	35219151	35219600	+	0	NA	exon (NM_000610, exon 16 of 18)	exon (NM_000610, exon 16 of 18)	56425	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
227905	chr9	94153651	94154150	+	0	NA	Intergenic	Intergenic	-22057	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
78038	chr15	90030651	90030750	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	23945	NR_036135	100422841		NR_036135	ENSG00000265871	MIR3174	-	microRNA 3174	ncRNA
220862	chr8	103405421	103405680	+	0	NA	intron (NM_030780, intron 2 of 6)	intron (NM_030780, intron 2 of 6)	9557	NM_030780	81034		NM_030780	ENSG00000164933	SLC25A32	GLYB|MFT|MFTC|RREI	solute carrier family 25 member 32	protein-coding
189786	chr5	176725551	176725850	+	0	NA	Intergenic	Intergenic	-17505	NR_108030	102577424		NR_108030	ENSG00000248859	LINC01574	HI-LNC12	long intergenic non-protein coding RNA 1574	ncRNA
91411	chr17	4702121	4702650	+	0	NA	intron (NM_001278241, intron 1 of 18)	AluJb|SINE|Alu	1752	NM_001278241	27043		NM_014389	ENSG00000141456	PELP1	MNAR|P160	proline, glutamate and leucine rich protein 1	protein-coding
95419	chr17	36089871	36091050	+	0	NA	promoter-TSS (NR_111964)	promoter-TSS (NR_111964)	-317	NM_002983	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
20379	chr1	198121201	198121600	+	0	NA	Intergenic	Intergenic	-35598	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
102806	chr17	76409701	76409900	+	0	NA	intron (NM_022066, intron 1 of 17)	intron (NM_022066, intron 1 of 17)	24522	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
35126	chr11	698501	698830	+	0	NA	intron (NM_001042463, intron 1 of 4)	intron (NM_001042463, intron 1 of 4)	2849	NM_001276274	283232		NM_174940	ENSG00000177042	TMEM80	-	transmembrane protein 80	protein-coding
225320	chr9	34609421	34609680	+	0	NA	TTS (NM_148179)	TTS (NM_148179)	2547	NM_148178	138716		NM_148178	ENSG00000164967	RPP25L	C9orf23|bA296L22.5	ribonuclease P/MRP subunit p25 like	protein-coding
90720	chr17	1905401	1905800	+	0	NA	Intergenic	Intergenic	75595	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
27966	chr10	42551871	42553380	+	0	NA	intron (NR_026777, intron 1 of 7)	CpG-2816	245	NR_026777	100129482		NR_026777	ENSG00000293313	ZNF37BP	KOX21|ZNF37B	zinc finger protein 37B, pseudogene	pseudo
130813	chr2	87050721	87050980	+	0	NA	intron (NR_026846, intron 3 of 10)	AluJr|SINE|Alu	25563	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
45144	chr11	117198671	117198980	+	0	NA	promoter-TSS (NM_001001522)	promoter-TSS (NM_001001522)	-469	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
58260	chr12	128815751	128816050	+	0	NA	intron (NM_145648, intron 1 of 7)	intron (NM_145648, intron 1 of 7)	8058	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
131631	chr2	97005371	97005530	+	0	NA	Intergenic	L1ME3G|LINE|L1	-18870	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
54431	chr12	91577771	91578350	+	0	NA	Intergenic	Intergenic	-395243	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
211360	chr7	104983541	104985080	+	0	NA	non-coding (NR_039981, exon 1 of 1)	non-coding (NR_039981, exon 1 of 1)	6855	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
36389	chr11	4005921	4006380	+	0	NA	intron (NM_001382568, intron 2 of 11)	MSTA|LTR|ERVL-MaLR	-88535	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
46317	chr11	125113301	125113700	+	0	NA	Intergenic	Intergenic	-1874	NM_001258245	219854		NM_001080546	ENSG00000150433	TMEM218	JBTS39	transmembrane protein 218	protein-coding
188297	chr5	151152851	151153380	+	0	NA	intron (NM_001363114, intron 1 of 24)	intron (NM_001363114, intron 1 of 24)	4664	NM_001155	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
34466	chr10	132451321	132451600	+	0	NA	Intergenic	Intergenic	6271	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
10052	chr1	58652451	58652930	+	0	NA	Intergenic	Intergenic	47372	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
23284	chr1	228006621	228007080	+	0	NA	promoter-TSS (NM_033131)	promoter-TSS (NM_033131)	-148	NM_033131	89780		NM_033131	ENSG00000154342	WNT3A	-	Wnt family member 3A	protein-coding
134384	chr2	136327121	136328280	+	0	NA	Intergenic	Intergenic	-209551	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
232948	chr9	136942651	136942950	+	0	NA	exon (NM_018998, exon 4 of 9)	exon (NM_018998, exon 4 of 9)	1938	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
147518	chr20	59204901	59205300	+	0	NA	intron (NM_178457, intron 3 of 5)	intron (NM_178457, intron 3 of 5)	41279	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
217864	chr8	37836721	37836980	+	0	NA	intron (NM_032777, intron 13 of 18)	intron (NM_032777, intron 13 of 18)	13011	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
207098	chr7	40015751	40016050	+	0	NA	intron (NM_003718, intron 5 of 13)	intron (NM_003718, intron 5 of 13)	65540	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
119672	chr19	40849871	40850250	+	0	NA	intron (NM_000762, intron 1 of 8)	intron (NM_000762, intron 1 of 8)	387	NM_000762	1548		NM_000762	ENSG00000255974	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450 family 2 subfamily A member 6	protein-coding
40696	chr11	64776951	64778100	+	0	NA	5' UTR (NM_001178031, exon 1 of 13)	5' UTR (NM_001178031, exon 1 of 13)	236	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
200884	chr6	138974601	138974800	+	0	NA	intron (NM_031922, intron 1 of 19)	intron (NM_031922, intron 1 of 19)	13553	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
191420	chr6	10411471	10413000	+	0	NA	promoter-TSS (NR_033910)	promoter-TSS (NR_033910)	-83	NR_033910	100130275		NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
58295	chr12	130796721	130797660	+	0	NA	intron (NM_194356, intron 9 of 10)	intron (NM_194356, intron 9 of 10)	42060	NM_001351051	2054		NM_001980	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
175226	chr4	56912351	56913000	+	0	NA	intron (NM_001193508, intron 2 of 3)	AluSx3|SINE|Alu	3762	NM_001193508	5978		NM_005612	ENSG00000084093	REST	DFNA27|GINGF5|HGF5|NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
184469	chr5	100774851	100775400	+	0	NA	Intergenic	LTR13|LTR|ERVK	41440	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
10544	chr1	66980571	66980930	+	0	NA	intron (NM_001077702, intron 13 of 15)	L2a|LINE|L2	50494	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
204313	chr7	2700221	2700480	+	0	NA	5' UTR (NM_133463, exon 2 of 7)	5' UTR (NM_133463, exon 2 of 7)	12148	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
51583	chr12	52631471	52631700	+	0	NA	Intergenic	MER70A|LTR|ERVL	-13026	NM_175068	319101		NM_175068	ENSG00000186049	KRT73	CK-73|IRT6IRS3|K6IRS3|K73|KRT6IRS3	keratin 73	protein-coding
187416	chr5	141968571	141969740	+	0	NA	promoter-TSS (NM_004290)	promoter-TSS (NM_004290)	50	NM_004290	9604		NM_004290	ENSG00000013561	RNF14	ARA54|HFB30|HRIHFB2038|TRIAD2	ring finger protein 14	protein-coding
229758	chr9	125185151	125185250	+	0	NA	intron (NM_001123369, intron 1 of 5)	intron (NM_001123369, intron 1 of 5)	4603	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
121492	chr19	47140221	47140480	+	0	NA	intron (NR_027280, intron 1 of 8)	AluY|SINE|Alu	9515	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
53229	chr12	62331421	62331680	+	0	NA	intron (NM_001351164, intron 6 of 21)	intron (NM_001351164, intron 6 of 21)	71146	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
208609	chr7	72955671	72955830	+	0	NA	promoter-TSS (NR_033323)	promoter-TSS (NR_033323)	-987	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
146107	chr20	47785471	47786030	+	0	NA	intron (NM_198596, intron 1 of 20)	CpG	314	NM_018837	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
138607	chr2	208294371	208294830	+	0	NA	intron (NM_015040, intron 7 of 41)	L1MC1|LINE|L1	28333	NM_152671	200576		NM_015040	ENSG00000115020	PIKFYVE	CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29	phosphoinositide kinase, FYVE-type zinc finger containing	protein-coding
225577	chr9	36040221	36040750	+	0	NA	intron (NM_021111, intron 1 of 20)	L2a|LINE|L2	3572	NM_021111	8434		NM_021111	ENSG00000122707	RECK	ST15	reversion inducing cysteine rich protein with kazal motifs	protein-coding
42560	chr11	71829801	71830000	+	0	NA	Intergenic	L1MA10|LINE|L1	-3300	NM_001002035	245911		NM_001002035	ENSG00000184276	DEFB108B	DEFB-8|hBD-8	defensin beta 108B	protein-coding
57207	chr12	121499721	121500850	+	0	NA	intron (NM_001005366, intron 11 of 22)	intron (NM_001005366, intron 11 of 22)	-55933	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
212207	chr7	118214051	118214900	+	0	NA	Intergenic	CpG	-10229	NM_019644	56311		NM_019644	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
177032	chr4	107094401	107094700	+	0	NA	Intergenic	L1P4a|LINE|L1	-58237	NM_014421	27123		NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
7114	chr1	32144671	32145380	+	0	NA	intron (NM_012316, intron 1 of 13)	AluY|SINE|Alu	-34650	NM_175852	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
44885	chr11	114399851	114401180	+	0	NA	promoter-TSS (NM_001286046)	promoter-TSS (NM_001286046)	-4	NM_019021	54494		NM_019021	ENSG00000180425	C11orf71	URLC7	chromosome 11 open reading frame 71	protein-coding
144599	chr20	35802971	35803530	+	0	NA	intron (NM_016436, intron 2 of 17)	AluSg|SINE|Alu	31235	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
165120	chr3	71702251	71703180	+	0	NA	intron (NM_173359, intron 3 of 7)	intron (NM_173359, intron 3 of 7)	22687	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
99435	chr17	50118421	50118680	+	0	NA	intron (NM_174920, intron 2 of 10)	intron (NM_174920, intron 2 of 10)	11610	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
9046	chr1	44798171	44798530	+	0	NA	Intergenic	Intergenic	-2027	NM_004073	1263		NM_004073	ENSG00000173846	PLK3	CNK|FNK|PLK-3|PRK	polo like kinase 3	protein-coding
67866	chr14	74245721	74245980	+	0	NA	intron (NM_182894, intron 3 of 4)	intron (NM_182894, intron 3 of 4)	6401	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
163880	chr3	52509801	52510380	+	0	NA	intron (NM_015136, intron 23 of 68)	intron (NM_015136, intron 23 of 68)	14752	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
204019	chr7	1916151	1916600	+	0	NA	intron (NM_001304524, intron 15 of 16)	L1MD1|LINE|L1	24196	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
138957	chr2	218260821	218261430	+	0	NA	5' UTR (NM_001077191, exon 1 of 2)	5' UTR (NM_001077191, exon 1 of 2)	110	NM_170699	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
208959	chr7	74187121	74187380	+	0	NA	intron (NM_022170, intron 1 of 6)	AluSx|SINE|Alu	-3948	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
134017	chr2	131037471	131038750	+	0	NA	intron (NM_001375904, intron 2 of 10)	intron (NM_001375904, intron 2 of 10)	55052	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
207066	chr7	39854821	39855280	+	0	NA	Intergenic	Intergenic	94369	NR_158201	112267983		NR_158201	ENSG00000259826	CDK13-DT	-	CDK13 divergent transcript	ncRNA
188122	chr5	150388301	150388830	+	0	NA	intron (NM_001371623, intron 18 of 26)	intron (NM_001371623, intron 18 of 26)	24191	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
185365	chr5	127564121	127564480	+	0	NA	Intergenic	Intergenic	46660	NM_001286808	133619		NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
83748	chr16	28676001	28676400	+	0	NA	Intergenic	Intergenic	-12358	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
210086	chr7	97007271	97007430	+	0	NA	intron (NM_005222, intron 1 of 2)	intron (NM_005222, intron 1 of 2)	1797	NM_005222	1750		NM_005222	ENSG00000006377	DLX6	-	distal-less homeobox 6	protein-coding
42595	chr11	72069971	72070330	+	0	NA	intron (NM_001286561, intron 1 of 26)	intron (NM_001286561, intron 1 of 26)	2152	NR_036123	100422953		NR_036123	ENSG00000263742	MIR3165	mir-3165	microRNA 3165	ncRNA
64575	chr14	24688651	24688750	+	0	NA	Intergenic	MIR3|SINE|MIR	-54510	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
31613	chr10	97371871	97372930	+	0	NA	intron (NM_015179, intron 19 of 33)	MIR|SINE|MIR	28940	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
3818	chr1	16779301	16779500	+	0	NA	Intergenic	Intergenic	-14920	NM_001271733	11223		NM_001271733	ENSG00000186715	MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P|MST1P7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1 like (pseudogene)	pseudo
89482	chr16	89116501	89116900	+	0	NA	intron (NM_174917, intron 6 of 10)	intron (NM_174917, intron 6 of 10)	-19848	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
214503	chr7	150457701	150458130	+	0	NA	intron (NM_175571, intron 1 of 4)	L2a|LINE|L2	7285	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
16926	chr1	155901651	155901950	+	0	NA	intron (NM_001256821, intron 5 of 5)	AluJb|SINE|Alu	9118	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
82787	chr16	21454371	21454530	+	0	NA	intron (NR_027155, intron 22 of 28)	intron (NR_027155, intron 22 of 28)	-19995	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
234214	chrX	12973271	12974030	+	0	NA	Intergenic	Intergenic	-1460	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
232589	chr9	136403121	136405830	+	0	NA	intron (NM_001039707, intron 8 of 9)	intron (NM_001039707, intron 8 of 9)	-6038	NM_003086	6621		NM_003086	ENSG00000165684	SNAPC4	NEDRSO|PTFalpha|SNAP190	small nuclear RNA activating complex polypeptide 4	protein-coding
102587	chr17	75891551	75892280	+	0	NA	intron (NM_173547, intron 4 of 5)	intron (NM_173547, intron 4 of 5)	5036	NM_001256124	201292		NM_173547	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
17500	chr1	156735621	156736400	+	0	NA	intron (NM_015997, intron 7 of 7)	intron (NM_015997, intron 7 of 7)	5078	NM_024540	79590		NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24|uL24m	mitochondrial ribosomal protein L24	protein-coding
131709	chr2	97759451	97760350	+	0	NA	intron (NM_015348, intron 38 of 40)	intron (NM_015348, intron 38 of 40)	26600	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
201707	chr6	149710351	149710450	+	0	NA	intron (NM_001350339, intron 1 of 9)	MER89|LTR|ERV1	6025	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
159586	chr3	15066301	15066700	+	0	NA	Intergenic	L1MCb|LINE|L1	-1185	NM_022497	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
170354	chr3	184566371	184566530	+	0	NA	intron (NM_004443, intron 1 of 15)	intron (NM_004443, intron 1 of 15)	4665	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
132166	chr2	101767301	101767900	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	69335	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
193817	chr6	31471521	31472030	+	0	NA	non-coding (NR_002812, exon 1 of 1)	non-coding (NR_002812, exon 1 of 1)	546	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
101135	chr17	65039321	65040230	+	0	NA	intron (NM_001282425, intron 2 of 3)	L2c|LINE|L2	15999	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
104283	chr17	80841101	80841300	+	0	NA	intron (NM_020761, intron 10 of 33)	CpG	-35568	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
232660	chr9	136488451	136489180	+	0	NA	Intergenic	Intergenic	-5056	NM_001276418	9919		NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding
196879	chr6	52162921	52163200	+	0	NA	Intergenic	Intergenic	-12037	NR_131248	101154644		NR_131248		LINCMD1	LINC-MD1|MIR133BHG	long intergenic non-protein coding RNA, muscle differentiation 1	ncRNA
83971	chr16	29247721	29247980	+	0	NA	Intergenic	Intergenic	-54437	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
112331	chr19	5912571	5912730	+	0	NA	Intergenic	AluJo|SINE|Alu	-1604	NM_004058	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
66136	chr14	60195251	60195350	+	0	NA	Intergenic	Intergenic	-25436	NM_001322280	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
99957	chr17	57442171	57442580	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	81222	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
108052	chr18	59356451	59357050	+	0	NA	intron (NM_005570, intron 1 of 12)	MIRc|SINE|MIR	2515	NM_005570	3998		NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
122051	chr19	48651671	48652000	+	0	NA	intron (NR_004401, intron 1 of 4)	intron (NR_004401, intron 1 of 4)	-5648	NR_136241	770		NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
123	chr1	500371	500730	+	0	NA	Intergenic	AluJr|SINE|Alu	-5105	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
180338	chr5	6686801	6687250	+	0	NA	intron (NR_103771, intron 2 of 2)	intron (NR_103771, intron 2 of 2)	20686	NR_103771	100505625		NR_103771	ENSG00000248677	LINC02102	-	long intergenic non-protein coding RNA 2102	ncRNA
104912	chr17	81906171	81906330	+	0	NA	intron (NM_001256434, intron 9 of 13)	intron (NM_001256434, intron 9 of 13)	4012	NM_148896	256933		NM_148896	ENSG00000183979	NPB	L7|PPL7|PPNPB	neuropeptide B	protein-coding
112004	chr19	4974951	4975250	+	0	NA	intron (NM_001370093, intron 1 of 11)	intron (NM_001370093, intron 1 of 11)	5987	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
5150	chr1	24908701	24909430	+	0	NA	intron (NM_001031680, intron 4 of 5)	intron (NM_001031680, intron 4 of 5)	10351	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
118260	chr19	35258821	35259080	+	0	NA	exon (NM_001260489, exon 3 of 9)	exon (NM_001260489, exon 3 of 9)	9948	NM_001385215	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
11445	chr1	89842821	89844800	+	0	NA	intron (NM_001134479, intron 2 of 2)	CpG-1310	21871	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
83302	chr16	24504751	24505080	+	0	NA	Intergenic	Intergenic	-34651	NM_006910	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
201050	chr6	142232251	142232950	+	0	NA	Intergenic	L1P2|LINE|L1	-69319	NM_020455	57211		NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
121504	chr19	47163571	47163730	+	0	NA	intron (NR_027280, intron 5 of 8)	AluSz|SINE|Alu	32815	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
111551	chr19	4042501	4043200	+	0	NA	TTS (NM_001317990)	TTS (NM_001317990)	22679	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
225222	chr9	34183451	34184480	+	0	NA	intron (NM_001171201, intron 1 of 5)	AluSp|SINE|Alu	4922	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
1057	chr1	1898471	1898630	+	0	NA	Intergenic	Intergenic	7370	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
67455	chr14	70818701	70819050	+	0	NA	Intergenic	L2a|LINE|L2	-9362	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
105673	chr18	2638251	2639380	+	0	NA	Intergenic	L1MC1|LINE|L1	16580	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
203303	chr6	170084771	170085380	+	0	NA	Intergenic	Intergenic	-75567	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
167687	chr3	130155501	130155750	+	0	NA	Intergenic	Intergenic	43075	NR_146654	105374104		NR_146653	ENSG00000249846	LINC02021	-	long intergenic non-protein coding RNA 2021	ncRNA
211262	chr7	102683201	102683800	+	0	NA	intron (NR_146066, intron 9 of 11)	MIR3|SINE|MIR	-11765	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
85982	chr16	57416351	57417630	+	0	NA	TTS (NM_002987)	TTS (NM_002987)	12223	NM_002987	6361		NM_002987	ENSG00000102970	CCL17	A-152E5.3|ABCD-2|SCYA17|TARC	C-C motif chemokine ligand 17	protein-coding
222784	chr8	142002171	142002430	+	0	NA	Intergenic	Intergenic	-174039	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
175799	chr4	77810371	77811000	+	0	NA	intron (NM_001365006, intron 1 of 11)	L1MA5A|LINE|L1	8379	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
50182	chr12	45995651	45995950	+	0	NA	Intergenic	Intergenic	-5226	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
70712	chr14	103333291	103335650	+	0	NA	promoter-TSS (NM_183004)	promoter-TSS (NM_183004)	190	NR_158216	105370687		NR_158216		EIF5-DT	-	EIF5 divergent transcript	ncRNA
86840	chr16	67923101	67923630	+	0	NA	intron (NM_006742, intron 2 of 2)	intron (NM_006742, intron 2 of 2)	8497	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
46359	chr11	126060871	126061230	+	0	NA	intron (NM_001243597, intron 1 of 19)	intron (NM_001243597, intron 1 of 19)	1816	NM_001378964	50937		NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|Ihog|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
95935	chr17	38945501	38945700	+	0	NA	intron (NM_001008777, intron 6 of 10)	AluSx|SINE|Alu	20432	NR_038847	100505576		NM_001414697	ENSG00000263874	LASP1NB	LINC00672	LASP1 neighbor	protein-coding
17127	chr1	156172371	156172930	+	0	NA	intron (NM_001370567, intron 9 of 13)	MIR|SINE|MIR	18102	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
204980	chr7	6395321	6395580	+	0	NA	intron (NM_006908, intron 3 of 5)	intron (NM_006908, intron 3 of 5)	20923	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
218963	chr8	61467501	61467780	+	0	NA	intron (NM_173519, intron 5 of 5)	intron (NM_173519, intron 5 of 5)	179670	NM_173519	157807		NM_173519	ENSG00000177182	CLVS1	C6orf212L|CRALBPL|RLBP1L1	clavesin 1	protein-coding
31515	chr10	96722051	96722230	+	0	NA	Intergenic	AluYa5|SINE|Alu	-1626	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
64673	chr14	32074651	32074980	+	0	NA	TTS (NR_027263)	TTS (NR_027263)	1884	NR_027263	84837		NM_032751		ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	ncRNA
42693	chr11	72650601	72650800	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	-8240	NM_001243784	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
169489	chr3	169764371	169765630	+	0	NA	promoter-TSS (NR_001566)	promoter-TSS (NR_001566)	60	NR_001566	7012		NR_001566	ENSG00000277925	TERC	DKCA1|PFBMFT2|SCARNA19|TER|TR|TRC3|hTR	telomerase RNA component	ncRNA
4517	chr1	21782601	21784080	+	0	NA	promoter-TSS (NM_001032730)	promoter-TSS (NM_001032730)	-141	NM_001330394	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
13109	chr1	111626321	111627030	+	0	NA	intron (NM_001291896, intron 1 of 7)	intron (NM_001291896, intron 1 of 7)	-6277	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
54330	chr12	89656421	89656680	+	0	NA	intron (NM_001366524, intron 1 of 21)	MIRb|SINE|MIR	52288	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
165397	chr3	96814001	96814400	+	0	NA	promoter-TSS (NM_001080448)	promoter-TSS (NM_001080448)	-394	NM_001080448	285220		NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
147040	chr20	53625401	53625600	+	0	NA	intron (NR_134576, intron 2 of 2)	intron (NR_134576, intron 2 of 2)	17146	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
222683	chr8	141252401	141252800	+	0	NA	intron (NM_001286646, intron 2 of 8)	CpG	-1967	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
81799	chr16	11540751	11541180	+	0	NA	Intergenic	AluJb|SINE|Alu	-13718	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
85791	chr16	56950051	56950480	+	0	NA	Intergenic	Intergenic	-11685	NM_001286085	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
120706	chr19	45177921	45180330	+	0	NA	promoter-TSS (NM_001270891)	promoter-TSS (NM_001270891)	341	NM_212550	388552		NM_212550	ENSG00000189114	BLOC1S3	BLOS3|HPS8|RP	biogenesis of lysosomal organelles complex 1 subunit 3	protein-coding
24295	chr1	236537871	236538230	+	0	NA	intron (NM_201544, intron 3 of 9)	AluJr4|SINE|Alu	-13542	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
72930	chr15	40419871	40420530	+	0	NA	3' UTR (NM_001354597, exon 12 of 12)	3' UTR (NM_001354597, exon 12 of 12)	14405	NM_001159508	3712		NM_002225	ENSG00000128928	IVD	ACAD2|IVDH	isovaleryl-CoA dehydrogenase	protein-coding
97871	chr17	45024601	45024800	+	0	NA	exon (NM_001288655, exon 5 of 5)	exon (NM_001288655, exon 5 of 5)	26932	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
132578	chr2	106507621	106509200	+	0	NA	3' UTR (NM_001349727, exon 6 of 6)	3' UTR (NM_001349727, exon 6 of 6)	21046	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
197610	chr6	82245851	82245950	+	0	NA	intron (NM_015525, intron 1 of 28).2	intron (NM_015525, intron 1 of 28).2	1844	NM_001300906	25998		NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI	inhibitor of Bruton tyrosine kinase	protein-coding
228761	chr9	110217701	110218000	+	0	NA	Intergenic	Intergenic	-9691	NM_001012993	401546		NM_001012993	ENSG00000188959	C9orf152	bA470J20.2	chromosome 9 open reading frame 152	protein-coding
180523	chr5	14438271	14438430	+	0	NA	intron (NR_134469, intron 34 of 56)	intron (NR_134469, intron 34 of 56)	-25633	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
202762	chr6	159047421	159048100	+	0	NA	Intergenic	Intergenic	-2608	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
166464	chr3	114224501	114225100	+	0	NA	Intergenic	Intergenic	12778	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
91310	chr17	4330901	4331050	+	0	NA	intron (NM_003342, intron 1 of 5)	intron (NM_003342, intron 1 of 5)	35699	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
105774	chr18	2805771	2806730	+	0	NA	Intergenic	Intergenic	-40756	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
181626	chr5	48589471	48589680	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1851713	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
95457	chr17	36180451	36180750	+	0	NA	Intergenic	Intergenic	-3976	NM_001001417	414059		NM_001001417	ENSG00000274808	TBC1D3B	PRC17|TBC1D3I|TBC1D3L	TBC1 domain family member 3B	protein-coding
134332	chr2	136109001	136109530	+	0	NA	Intergenic	AluJb|SINE|Alu	6970	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
170866	chr3	192835951	192836050	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	81856	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
194586	chr6	33433171	33433650	+	0	NA	intron (NM_006772, intron 5 of 18).2	intron (NM_006772, intron 5 of 18).2	-4921	NR_049800	100847012		NR_049800	ENSG00000284256	MIR5004	mir-5004	microRNA 5004	ncRNA
200832	chr6	138004571	138004880	+	0	NA	Intergenic	Intergenic	-58925	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
184045	chr5	91378871	91379230	+	0	NA	intron (NM_001329672, intron 1 of 6)	intron (NM_001329672, intron 1 of 6)	1047	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
97178	chr17	42672301	42672500	+	0	NA	intron (NM_024927, intron 6 of 12)	intron (NM_024927, intron 6 of 12)	3611	NR_073574	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
185443	chr5	131252221	131253490	+	0	NA	Intergenic	L2c|LINE|L2	-11198	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
24260	chr1	236398151	236398350	+	0	NA	intron (NM_080738, intron 1 of 5)	AluSz|SINE|Alu	2837	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
28431	chr10	48324551	48324850	+	0	NA	intron (NM_001323331, intron 2 of 12)	L1MC5a|LINE|L1	18023	NM_001323320	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
5263	chr1	25034921	25035250	+	0	NA	Intergenic	Intergenic	11582	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
151457	chr21	46182051	46182530	+	0	NA	intron (NM_032261, intron 1 of 3)	intron (NM_032261, intron 1 of 3)	2169	NM_001142854	84221		NM_032261	ENSG00000160284	SPATC1L	C21orf56	spermatogenesis and centriole associated 1 like	protein-coding
192305	chr6	21588071	21588250	+	0	NA	Intergenic	CpG	-5591	NM_003107	6659		NM_003107	ENSG00000124766	SOX4	CSS10|EVI16	SRY-box transcription factor 4	protein-coding
177317	chr4	109696701	109696900	+	0	NA	intron (NM_001226, intron 3 of 6)	AluY|SINE|Alu	6645	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
29698	chr10	72059401	72060480	+	0	NA	3' UTR (NM_001244950, exon 11 of 11)	3' UTR (NM_001244950, exon 11 of 11)	28611	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
172736	chr4	2825771	2825930	+	0	NA	intron (NM_001145856, intron 5 of 12)	intron (NM_001145856, intron 5 of 12)	7036	NM_003023	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
167719	chr3	131004621	131004880	+	0	NA	intron (NM_001378511, intron 27 of 27)	intron (NM_001378511, intron 27 of 27)	22075	NM_014065	28990		NM_014065	ENSG00000034533	ASTE1	HT001	asteroid homolog 1	protein-coding
190003	chr5	177473401	177474400	+	0	NA	promoter-TSS (NM_001363541)	promoter-TSS (NM_001363541)	-266	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
148525	chr20	64101801	64103130	+	0	NA	Intergenic	CpG	5100	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
228490	chr9	100068001	100068200	+	0	NA	intron (NM_015051, intron 1 of 11)	SVA_D|Retroposon|SVA	30900	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
67937	chr14	74767421	74768780	+	0	NA	intron (NM_019589, intron 1 of 20)	L1MC5a|LINE|L1	4784	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
78705	chr15	98139321	98139580	+	0	NA	Intergenic	L1ME3B|LINE|L1	-50697	NR_120325	101927332		NR_120325	ENSG00000259611	LINC01582	-	long intergenic non-protein coding RNA 1582	ncRNA
66602	chr14	63639271	63639430	+	0	NA	intron (NM_001382425, intron 1 of 3)	FLAM_C|SINE|Alu	2521	NM_001382427	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
164766	chr3	69095671	69096800	+	0	NA	intron (NM_006407, intron 1 of 2)	intron (NM_006407, intron 1 of 2)	11298	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
157041	chr22	42570571	42572150	+	0	NA	non-coding (NR_104301, exon 9 of 11)	non-coding (NR_104301, exon 9 of 11)	10651	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
103902	chr17	79807201	79807400	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-10223	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
43894	chr11	88420601	88420800	+	0	NA	Intergenic	Intergenic	-82964	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
113885	chr19	10674021	10674700	+	0	NA	intron (NM_153464, intron 4 of 17)	AluYh3|SINE|Alu	20014	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
77797	chr15	87762171	87762330	+	0	NA	Intergenic	Intergenic	184018	NR_162119	113218493		NR_162119		MIR11181	-	microRNA 11181	ncRNA
59566	chr13	27421971	27422330	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-2469	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
99919	chr17	56976401	56976600	+	0	NA	Intergenic	AluSz|SINE|Alu	-1631	NM_021626	59342		NM_021626	ENSG00000121064	SCPEP1	HSCP1|RISC	serine carboxypeptidase 1	protein-coding
63058	chr13	113113701	113113900	+	0	NA	non-coding (NR_051961, exon 3 of 7)	non-coding (NR_051961, exon 3 of 7)	8009	NM_019616	2155		NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
17099	chr1	156146901	156147660	+	0	NA	Intergenic	Intergenic	-2664	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
125947	chr2	25207051	25207550	+	0	NA	intron (NR_132378, intron 1 of 1)	intron (NR_132378, intron 1 of 1)	2987	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
177084	chr4	108059751	108060550	+	0	NA	intron (NM_001130714, intron 9 of 9)	intron (NM_001130714, intron 9 of 9)	55486	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
194807	chr6	34241551	34241900	+	0	NA	TTS (NR_106893)	TTS (NR_106893)	1052	NR_106893	102465502		NR_106893	ENSG00000276404	MIR6835	hsa-mir-6835	microRNA 6835	ncRNA
62765	chr13	108220821	108221100	+	0	NA	intron (NM_032859, intron 1 of 1)	intron (NM_032859, intron 1 of 1)	2568	NM_032859	84945		NM_032859	ENSG00000139826	ABHD13	BEM46L1|C13orf6|bA153I24.2	abhydrolase domain containing 13	protein-coding
170898	chr3	193788171	193788330	+	0	NA	Intergenic	Intergenic	55759	NR_146718	105374285		NR_146718		LINC02038	-	long intergenic non-protein coding RNA 2038	ncRNA
39531	chr11	61098321	61098980	+	0	NA	intron (NM_001346456, intron 1 of 10)	LTR2|LTR|ERV1	-3839	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
27837	chr10	38402051	38403850	+	0	NA	promoter-TSS (NR_027269)	promoter-TSS (NR_027269)	-23	NR_148868	285961		NR_027269	ENSG00000291056	SEPTIN7P9	CDC10L|SEPT7L|SEPT7P9|bA291L22.2	septin 7 pseudogene 9	pseudo
103652	chr17	78767921	78768430	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	14033	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
150723	chr21	43739601	43740280	+	0	NA	intron (NM_003681, intron 2 of 10)	intron (NM_003681, intron 2 of 10)	-1546	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
70224	chr14	100643801	100644000	+	0	NA	Intergenic	Intergenic	-13368	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
84612	chr16	30692921	30693180	+	0	NA	Intergenic	AluSc|SINE|Alu	5421	NM_001256932	730183		NM_001256932	ENSG00000261840	LOC730183	-	uncharacterized LOC730183	ncRNA
190309	chr5	179604521	179604830	+	0	NA	promoter-TSS (NR_110560).2	promoter-TSS (NR_110560).2	-934	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
83862	chr16	28904351	28904650	+	0	NA	TTS (NM_004320)	TTS (NM_004320)	20738	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
30414	chr10	78975671	78975900	+	0	NA	intron (NR_015429, intron 3 of 7)	L2a|LINE|L2	91663	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
233204	chr9	137218551	137219380	+	0	NA	3' UTR (NM_001144027, exon 13 of 13)	3' UTR (NM_001144027, exon 13 of 13)	2358	NM_031297	727800		NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
98477	chr17	47192121	47193130	+	0	NA	Intergenic	AluY|SINE|Alu	-3330	NM_001353049	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
164798	chr3	69385751	69386650	+	0	NA	promoter-TSS (NM_015123)	promoter-TSS (NM_015123)	-112	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
121165	chr19	46403721	46404980	+	0	NA	Intergenic	L2b|LINE|L2	9214	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
62790	chr13	109206671	109206830	+	0	NA	exon (NM_001198950, exon 35 of 35)	exon (NM_001198950, exon 35 of 35)	-39447	NR_047700	100885782		NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
44770	chr11	112280501	112281130	+	0	NA	intron (NR_126004, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	10066	NR_126004	283140		NR_126004	ENSG00000250303	LINC02762	-	long intergenic non-protein coding RNA 2762	ncRNA
148847	chr21	8411801	8412250	+	0	NA	TTS (NR_038958).2	TTS (NR_038958).2	15099	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
115125	chr19	14367751	14368680	+	0	NA	Intergenic	L1MB3|LINE|L1	-4225	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
118362	chr19	35693501	35694600	+	0	NA	Intergenic	(CCT)n|Simple_repeat|Simple_repeat	-10508	NM_001316902	27033		NM_014383	ENSG00000011590	ZBTB32	FAXF|FAZF|Rog|TZFP|ZNF538|mynn	zinc finger and BTB domain containing 32	protein-coding
173424	chr4	8201551	8202130	+	0	NA	intron (NM_001318480, intron 1 of 17)	intron (NM_001318480, intron 1 of 17)	2550	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
213513	chr7	139068451	139069950	+	0	NA	intron (NM_020119, intron 7 of 12)	LTR69|LTR|ERVL	-25043	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
203009	chr6	163416601	163417500	+	0	NA	intron (NM_206854, intron 1 of 6)	intron (NM_206854, intron 1 of 6)	2332	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
133007	chr2	111626021	111626280	+	0	NA	Intergenic	L1MDa|LINE|L1	-130989	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
234933	chrX	37993901	37994130	+	0	NA	Intergenic	Intergenic	3236	NM_012274	25763		NM_012274	ENSG00000187516	H2AP	CXorf27|HIP17|HYPM	H2A.P histone	protein-coding
4815	chr1	23605501	23605900	+	0	NA	Intergenic	AluY|SINE|Alu	-21634	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
26167	chr10	14409271	14409430	+	0	NA	Intergenic	Intergenic	-26073	NR_036181	100422843		NR_036181	ENSG00000266321	MIR4293	-	microRNA 4293	ncRNA
216020	chr8	9087921	9088230	+	0	NA	intron (NM_001354638, intron 6 of 7)	intron (NM_001354638, intron 6 of 7)	-29445	NR_145772	109616996		NR_145772		SNORD3I	-	small nucleolar RNA, C/D box 3I	snoRNA
168265	chr3	141440951	141442180	+	0	NA	intron (NM_001376122, intron 7 of 7)	intron (NM_001376122, intron 7 of 7)	38551	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
106521	chr18	21096251	21096350	+	0	NA	intron (NM_005406, intron 1 of 32)	AluSx1|SINE|Alu	15513	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
217356	chr8	27836271	27836630	+	0	NA	intron (NM_001278945, intron 1 of 7)	L2a|LINE|L2	1367	NM_001278945	55872		NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
225197	chr9	34067821	34068150	+	0	NA	Intergenic	AluYm1|SINE|Alu	-18786	NM_001370059	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
27014	chr10	26837201	26838600	+	0	NA	intron (NR_145410, intron 1 of 11)	AluSz6|SINE|Alu	23058	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
71174	chr14	105044601	105045000	+	0	NA	Intergenic	L1MC4|LINE|L1	20630	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
67306	chr14	69584701	69585300	+	0	NA	Intergenic	Intergenic	-10129	NM_001271507	56936		NM_020181	ENSG00000267909	CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
144179	chr20	34107751	34108080	+	0	NA	intron (NM_003908, intron 1 of 8)	intron (NM_003908, intron 1 of 8)	4328	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
172113	chr4	1154251	1154550	+	0	NA	Intergenic	Intergenic	18183	NM_012445	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
34855	chr11	328801	329030	+	0	NA	Intergenic	AluY|SINE|Alu	-8055	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
18428	chr1	161465071	161466050	+	0	NA	Intergenic	CpG	-39897	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
227036	chr9	83962221	83962480	+	0	NA	Intergenic	LTR16D|LTR|ERVL	-5364	NM_001317997	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
478	chr1	1160571	1161130	+	0	NA	Intergenic	Intergenic	-6254	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
51685	chr12	53096651	53096950	+	0	NA	promoter-TSS (NM_002178)	promoter-TSS (NM_002178)	-867	NM_002178	3489		NM_002178	ENSG00000167779	IGFBP6	IBP6	insulin like growth factor binding protein 6	protein-coding
150624	chr21	43381721	43382300	+	0	NA	Intergenic	Intergenic	-19661	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
79620	chr16	1101471	1102130	+	0	NA	Intergenic	Intergenic	-5556	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
48594	chr12	10315151	10315450	+	0	NA	non-coding (NR_147040, exon 5 of 5)	non-coding (NR_147040, exon 5 of 5)	7430	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
222298	chr8	133474471	133474800	+	0	NA	intron (NM_173344, intron 5 of 9)	L2a|LINE|L2	97252	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
63126	chr13	113393401	113394380	+	0	NA	Intergenic	CpG	17085	NM_001375393	113622		NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
18646	chr1	166913871	166914030	+	0	NA	3' UTR (NM_199351, exon 10 of 10)	3' UTR (NM_199351, exon 10 of 10)	-37686	NM_053053	117143		NM_053053	ENSG00000152382	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
140171	chr2	231634701	231634900	+	0	NA	Intergenic	Intergenic	41936	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
97003	chr17	42287901	42291030	+	0	NA	exon (NM_001288720, exon 2 of 18)	exon (NM_001288720, exon 2 of 18)	1409	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
133834	chr2	128028001	128029580	+	0	NA	promoter-TSS (NM_001330299)	promoter-TSS (NM_001330299)	-731	NM_001330299	79595		NM_024545	ENSG00000136715	SAP130	-	Sin3A associated protein 130	protein-coding
40618	chr11	64688021	64689250	+	0	NA	intron (NM_138732, intron 4 of 19)	intron (NM_138732, intron 4 of 19)	34562	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
26369	chr10	16439471	16440000	+	0	NA	intron (NM_001261837, intron 2 of 4)	intron (NM_001261837, intron 2 of 4)	2792	NM_001001484	9317		NM_030664	ENSG00000165983	PTER	HPHRP|RPR-1	phosphotriesterase related	protein-coding
88562	chr16	85549301	85549900	+	0	NA	Intergenic	Intergenic	-61809	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
84957	chr16	31382471	31382880	+	0	NA	3' UTR (NM_001286375, exon 31 of 31)	3' UTR (NM_001286375, exon 31 of 31)	-10660	NM_005353	3681		NM_005353	ENSG00000156886	ITGAD	ADB2|CD11D	integrin subunit alpha D	protein-coding
5992	chr1	26990271	26990780	+	0	NA	Intergenic	AluSx|SINE|Alu	-3167	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
150170	chr21	39185401	39185730	+	0	NA	TTS (NM_033656)	TTS (NM_033656)	-2051	NM_203433	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
37986	chr11	35030771	35031280	+	0	NA	Intergenic	Intergenic	89188	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
92200	chr17	7846571	7848030	+	0	NA	exon (NM_001080424, exon 10 of 22)	exon (NM_001080424, exon 10 of 22)	7383	NM_001080424	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
33264	chr10	114514151	114514700	+	0	NA	intron (NM_001322883, intron 6 of 20)	AluJb|SINE|Alu	12488	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
32970	chr10	110495921	110496880	+	0	NA	Intergenic	L2b|LINE|L2	-1507	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
124636	chr2	1769871	1770030	+	0	NA	Intergenic	Intergenic	-25435	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
171207	chr3	195722501	195722900	+	0	NA	intron (NM_020790, intron 1 of 5)	intron (NM_020790, intron 1 of 5)	1722	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
166008	chr3	108156521	108156780	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	30829	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
24486	chr1	244318201	244318950	+	0	NA	Intergenic	Intergenic	-34060	NM_001276348	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
224130	chr9	4725671	4726050	+	0	NA	intron (NM_001199853, intron 1 of 4)	L1MB7|LINE|L1	367	NM_001199856	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
13936	chr1	120197071	120197580	+	0	NA	Intergenic	CpG	-20805	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
194301	chr6	32785821	32786280	+	0	NA	Intergenic	Intergenic	-22518	NM_001198858	3120		NM_182549	ENSG00000232629	HLA-DQB2	DQB2|HLA-DQB1|HLA-DXB	major histocompatibility complex, class II, DQ beta 2	protein-coding
231427	chr9	131235921	131236180	+	0	NA	Intergenic	Intergenic	40460	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
101429	chr17	67420071	67420230	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	42869	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
182041	chr5	55808821	55809080	+	0	NA	intron (NM_024415, intron 18 of 21)	L1PA3|LINE|L1	42065	NM_001166534	54514		NM_019039	ENSG00000152670	DDX4	VASA	DEAD-box helicase 4	protein-coding
75205	chr15	64833471	64833830	+	0	NA	Intergenic	AluJb|SINE|Alu	-8003	NM_001286497	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
109171	chr19	302821	303830	+	0	NA	Intergenic	Intergenic	-11922	NM_003712	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
56988	chr12	120557751	120558050	+	0	NA	intron (NM_001330474, intron 6 of 16)	L2c|LINE|L2	23498	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
110048	chr19	1474451	1474550	+	0	NA	3' UTR (NM_152482, exon 3 of 3)	3' UTR (NM_152482, exon 3 of 3)	4715	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
158340	chr22	50452521	50453130	+	0	NA	intron (NM_002972, intron 36 of 40)	L1MEf|LINE|L1	22210	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
84435	chr16	30394101	30394300	+	0	NA	intron (NM_001214907, intron 1 of 1)	intron (NM_001214907, intron 1 of 1)	-1220	NM_001214909	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
126433	chr2	27892851	27893600	+	0	NA	intron (NM_199193, intron 2 of 13)	intron (NM_199193, intron 2 of 13)	-2111	NR_028308	100302650		NR_028308		BABAM2-AS1	BRE-AS1	BABAM2 antisense RNA 1	ncRNA
194034	chr6	31838601	31839330	+	0	NA	intron (NR_160951, intron 4 of 4).3	AluSx1|SINE|Alu	1889	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
158875	chr3	9876951	9877330	+	0	NA	exon (NM_001321142, exon 4 of 7)	exon (NM_001321142, exon 4 of 7)	1672	NM_001199623	63924		NM_022094	ENSG00000187288	CIDEC	CIDE-3|CIDE3|FPLD5|FSP27	cell death inducing DFFA like effector c	protein-coding
80057	chr16	1975671	1976030	+	0	NA	exon (NM_006453, exon 11 of 22)	exon (NM_006453, exon 11 of 22)	3797	NM_006453	10607		NM_006453	ENSG00000183751	TBL3	SAZD|UTP13	transducin beta like 3	protein-coding
148341	chr20	63815671	63815830	+	0	NA	intron (NR_110081, intron 1 of 2)	intron (NR_110081, intron 1 of 2)	7674	NR_110081	101928604		NR_110081		ZBTB46-AS1	-	ZBTB46 antisense RNA 1	ncRNA
44250	chr11	100687851	100687950	+	0	NA	promoter-TSS (NR_133571)	promoter-TSS (NR_133571)	55	NR_133571	100128386		NR_133571	ENSG00000248027	ARHGAP42-AS1	-	ARHGAP42 antisense RNA 1	ncRNA
160515	chr3	30639821	30641150	+	0	NA	intron (NM_001024847, intron 2 of 7)	MER2|DNA|TcMar-Tigger	33884	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
94482	chr17	29277151	29277580	+	0	NA	intron (NM_020772, intron 2 of 3)	intron (NM_020772, intron 2 of 3)	16783	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
88291	chr16	84051001	84051300	+	0	NA	Intergenic	Intergenic	-8355	NM_001080442	146167		NM_001080442	ENSG00000166558	SLC38A8	FHASD|FVH2|SNAT8	solute carrier family 38 member 8	protein-coding
49832	chr12	32273651	32274050	+	0	NA	intron (NR_148725, intron 2 of 9)	MER61B|LTR|ERV1	-125708	NM_001384126	121512		NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
103535	chr17	78639051	78639550	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-7243	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
56239	chr12	111914801	111915320	+	0	NA	Intergenic	AluY|SINE|Alu	-72055	NR_015404	51275		NR_015404	ENSG00000234608	MAPKAPK5-AS1	C12orf47|MAAS	MAPKAPK5 antisense RNA 1	ncRNA
144146	chr20	34034971	34036100	+	0	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	-13584	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
230753	chr9	128893371	128893830	+	0	NA	intron (NM_019594, intron 2 of 3)	intron (NM_019594, intron 2 of 3)	-11077	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
149202	chr21	24290241	24290570	+	0	NA	Intergenic	LTR52|LTR|ERVL	30972	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
19487	chr1	175025621	175026000	+	0	NA	Intergenic	Intergenic	-2355	NR_037606	63931		NM_022100	ENSG00000120333	MRPS14	COXPD38|DJ262D12.2|HSMRPS14|MRP-S14|S14mt|uS14m	mitochondrial ribosomal protein S14	protein-coding
205726	chr7	23485871	23486030	+	0	NA	Intergenic	Intergenic	-4438	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
194978	chr6	35346571	35347350	+	0	NA	intron (NM_006238, intron 1 of 7)	intron (NM_006238, intron 1 of 7)	4402	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
31134	chr10	89563821	89564250	+	0	NA	Intergenic	Intergenic	-28441	NM_213606	387700		NM_213606	ENSG00000152779	SLC16A12	CJMG|CRT2|CTRCT47|MCT12	solute carrier family 16 member 12	protein-coding
137778	chr2	199464271	199464430	+	0	NA	intron (NM_015265, intron 1 of 11)	CpG	758	NM_001172517	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
210582	chr7	100366671	100367550	+	0	NA	intron (NM_001371931, intron 4 of 4)	intron (NM_001371931, intron 4 of 4)	-6377	NM_178273	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
207562	chr7	44883221	44883480	+	0	NA	3' UTR (NM_033224, exon 1 of 1)	3' UTR (NM_033224, exon 1 of 1)	-1550	NR_039801	100616393		NR_039801	ENSG00000284261	MIR4657	mir-4657	microRNA 4657	ncRNA
107251	chr18	41906401	41906900	+	0	NA	Intergenic	Intergenic	-48584	NM_002647	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
116459	chr19	18084901	18085100	+	0	NA	intron (NM_153701, intron 1 of 9)	intron (NM_153701, intron 1 of 9)	1934	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
9708	chr1	53107571	53107730	+	0	NA	TTS (NM_001287596)	TTS (NM_001287596)	34988	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
147454	chr20	59004401	59005780	+	0	NA	intron (NM_001336, intron 2 of 5)	intron (NM_001336, intron 2 of 5)	2164	NM_001336	1522		NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
164284	chr3	57588351	57588680	+	0	NA	intron (NM_001660, intron 1 of 5)	AluSx|SINE|Alu	8829	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
132986	chr2	111506901	111507580	+	0	NA	Intergenic	MIRb|SINE|MIR	-12079	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
162519	chr3	48590201	48590800	+	0	NA	exon (NM_000094, exon 15 of 119)	exon (NM_000094, exon 15 of 119)	4829	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
177536	chr4	118834201	118834400	+	0	NA	intron (NM_014822, intron 1 of 22)	intron (NM_014822, intron 1 of 22)	1826	NM_001318066	9871		NM_014822	ENSG00000150961	SEC24D	CLCRP2	SEC24 homolog D, COPII coat complex component	protein-coding
198106	chr6	90294651	90295700	+	0	NA	intron (NM_021813, intron 1 of 8)	CpG	1668	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
186937	chr5	139640601	139641900	+	0	NA	Intergenic	Intergenic	-6049	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
93193	chr17	17810221	17810480	+	0	NA	TTS (NM_001005291)	TTS (NM_001005291)	3195	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
129818	chr2	72143751	72143850	+	0	NA	intron (NM_001277742, intron 1 of 4)	MER115|DNA|hAT-Tip100	4062	NM_001277742	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
87	chr1	351271	351830	+	0	NA	Intergenic	L1MC3|LINE|L1	100128	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
12991	chr1	110956671	110957180	+	0	NA	intron (NM_018372, intron 1 of 3)	intron (NM_018372, intron 1 of 3)	6997	NM_018372	55791		NM_018372	ENSG00000121931	LRIF1	C1orf103|FSHD3|HBiX1|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
9647	chr1	52604151	52604600	+	0	NA	intron (NM_015696, intron 1 of 2)	L2b|LINE|L2	2004	NM_015696	2882		NM_015696	ENSG00000116157	GPX7	CL683|GPX6|GPx-7|GSHPx-7|NPGPx	glutathione peroxidase 7	protein-coding
177811	chr4	123444221	123444550	+	0	NA	Intergenic	Intergenic	44845	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
207475	chr7	44625801	44626800	+	0	NA	intron (NM_001363523, intron 2 of 23)	(CA)n|Simple_repeat|Simple_repeat	19673	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
106345	chr18	13135721	13136690	+	0	NA	Intergenic	Intergenic	-81477	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
45088	chr11	117081221	117081550	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluY|SINE|Alu	17043	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
233810	chrX	1466951	1467700	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-13563	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
20601	chr1	198788321	198789280	+	0	NA	Intergenic	LTR89|LTR|ERVL?	70182	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
222266	chr8	133288251	133288830	+	0	NA	intron (NM_001374844, intron 1 of 15)	intron (NM_001374844, intron 1 of 15)	8150	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
227584	chr9	92377971	92378330	+	0	NA	intron (NM_001286969, intron 3 of 6)	intron (NM_001286969, intron 3 of 6)	26428	NM_014057	4969		NM_014057	ENSG00000106809	OGN	OG|OIF|SLRR3A	osteoglycin	protein-coding
108556	chr18	74797421	74797980	+	0	NA	intron (NM_001384475, intron 4 of 8)	intron (NM_001384475, intron 4 of 8)	166737	NM_001146190	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
106870	chr18	24135171	24135530	+	0	NA	3' UTR (NM_153211, exon 14 of 14)	3' UTR (NM_153211, exon 14 of 14)	-3606	NM_001308231	26256		NM_012189	ENSG00000154040	CABYR	CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2	calcium binding tyrosine phosphorylation regulated	protein-coding
192667	chr6	26215171	26216000	+	0	NA	TTS (NM_003518)	TTS (NM_003518)	1103	NM_003518	8339		NM_003518	ENSG00000273802	H2BC8	H2B.1A|H2B/a|H2BC10|H2BC4|H2BC6|H2BC7|H2BFA|HIST1H2BG|dJ221C16.8	H2B clustered histone 8	protein-coding
100202	chr17	59135021	59135280	+	0	NA	intron (NM_001330399, intron 1 of 3)	intron (NM_001330399, intron 1 of 3)	2722	NR_030411	768216		NR_030411	ENSG00000211514	MIR454	MIRN454|hsa-mir-454|mir-454	microRNA 454	ncRNA
13307	chr1	113399171	113399330	+	0	NA	intron (NM_152900, intron 1 of 20)	MLT1K|LTR|ERVL-MaLR	8735	NM_152900	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
52294	chr12	54603251	54603980	+	0	NA	Intergenic	Intergenic	6847	NR_003039	644076		NR_003039	ENSG00000293392	GLYCAM1	-	glycosylation dependent cell adhesion molecule 1 (pseudogene)	pseudo
87374	chr16	70432151	70432730	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	6660	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
230654	chr9	128698751	128699050	+	0	NA	Intergenic	AluSg|SINE|Alu	-3603	NM_013355	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
2816	chr1	11026701	11026900	+	0	NA	3' UTR (NM_006610, exon 11 of 11)	3' UTR (NM_006610, exon 11 of 11)	14146	NM_007375	23435		NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding
17329	chr1	156474501	156474700	+	0	NA	intron (NM_001271629, intron 8 of 10)	AluJr|SINE|Alu	16087	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
46157	chr11	123065771	123065930	+	0	NA	Intergenic	Intergenic	-3714	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
124114	chr19	55662551	55663050	+	0	NA	intron (NM_007279, intron 6 of 11)	L2a|LINE|L2	7765	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
201444	chr6	147509151	147509250	+	0	NA	exon (NM_001030060, exon 1 of 2)	exon (NM_001030060, exon 1 of 2)	510	NM_001030060	389432		NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding
164330	chr3	57816771	57816930	+	0	NA	intron (NR_165328, intron 2 of 22)	intron (NR_165328, intron 2 of 22)	59594	NM_001304421	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
97669	chr17	44216201	44217100	+	0	NA	exon (NM_014233, exon 3 of 21)	exon (NM_014233, exon 3 of 21)	3025	NM_001076684	7343		NM_014233	ENSG00000108312	UBTF	CONDBA|NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor	protein-coding
172360	chr4	1740001	1740900	+	0	NA	intron (NM_006342, intron 12 of 15)	intron (NM_006342, intron 12 of 15)	18929	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
159082	chr3	12135071	12135300	+	0	NA	intron (NM_133625, intron 1 of 12)	intron (NM_133625, intron 1 of 12)	23727	NM_003256	7079		NM_003256	ENSG00000157150	TIMP4	TIMP-4	TIMP metallopeptidase inhibitor 4	protein-coding
79571	chr16	991701	991900	+	0	NA	Intergenic	Intergenic	10030	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
165891	chr3	106212651	106212950	+	0	NA	Intergenic	Intergenic	-343399	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
138443	chr2	206087801	206088150	+	0	NA	Intergenic	AluY|SINE|Alu	-1801	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
12782	chr1	109733821	109734080	+	0	NA	TTS (NM_000849)	TTS (NM_000849)	7088	NR_024537	2947		NM_000849	ENSG00000134202	GSTM3	GST5|GSTB|GSTM3-3|GSTM3TV2|GTM3|hGSTM3-3	glutathione S-transferase mu 3	protein-coding
179921	chr5	747251	747750	+	0	NA	intron (NM_001351303, intron 8 of 13)	intron (NM_001351303, intron 8 of 13)	37229	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
127928	chr2	46461301	46461980	+	0	NA	Intergenic	Intergenic	-17925	NM_001145051	388946		NM_001145051	ENSG00000284701	TMEM247	-	transmembrane protein 247	protein-coding
53975	chr12	74541101	74541580	+	0	NA	3' UTR (NM_001136262, exon 1 of 1)	3' UTR (NM_001136262, exon 1 of 1)	3505	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
178231	chr4	143100671	143100930	+	0	NA	Intergenic	L1PA2|LINE|L1	84061	NR_136203	105377623		NR_136203		USP38-DT	-	USP38 divergent transcript	ncRNA
14659	chr1	145718921	145719730	+	0	NA	promoter-TSS (NM_007053)	promoter-TSS (NM_007053)	-174	NR_103845	11126		NM_007053	ENSG00000117281	CD160	BY55|NK1|NK28	CD160 molecule	protein-coding
139675	chr2	227031471	227031630	+	0	NA	intron (NM_000092, intron 40 of 47)	intron (NM_000092, intron 40 of 47)	132655	NM_000092	1286		NM_000092	ENSG00000081052	COL4A4	ATS2|BFH|BFH1|CA44	collagen type IV alpha 4 chain	protein-coding
230904	chr9	129241371	129241530	+	0	NA	Intergenic	Intergenic	-40966	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
32734	chr10	104303501	104304500	+	0	NA	3' UTR (NM_001191014, exon 5 of 5)	3' UTR (NM_001191014, exon 5 of 5)	-19364	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
238203	chrX	137313821	137314080	+	0	NA	Intergenic	Intergenic	-252177	NM_003413	7547		NM_003413	ENSG00000156925	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
27638	chr10	32955101	32955650	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	2519	NM_133376	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
197917	chr6	89435071	89435330	+	0	NA	intron (NM_014942, intron 1 of 15)	L1ME3D|LINE|L1	2022	NM_014942	22881		NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
172905	chr4	3487901	3488480	+	0	NA	intron (NM_001256896, intron 2 of 3)	intron (NM_001256896, intron 2 of 3)	3646	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
165346	chr3	88152971	88153750	+	0	NA	exon (NM_173824, exon 2 of 3)	exon (NM_173824, exon 2 of 3)	3401	NM_173824	285237		NM_173824	ENSG00000179021	C3orf38	-	chromosome 3 open reading frame 38	protein-coding
101204	chr17	65538071	65539300	+	0	NA	intron (NM_004655, intron 4 of 10)	(A)n|Simple_repeat|Simple_repeat	22963	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
235288	chrX	41937071	41937430	+	0	NA	Intergenic	LTR33|LTR|ERVL	-13696	NM_001367721	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
151400	chr21	45986501	45986700	+	0	NA	exon (NM_001848, exon 4 of 35)	exon (NM_001848, exon 4 of 35)	4830	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
205522	chr7	18495501	18496100	+	0	NA	promoter-TSS (NM_001321877)	promoter-TSS (NM_001321877)	51	NM_001321884	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
64505	chr14	24338251	24338850	+	0	NA	exon (NM_006871, exon 4 of 10)	exon (NM_006871, exon 4 of 10)	1441	NM_006871	11035		NM_006871	ENSG00000129465	RIPK3	RIP3	receptor interacting serine/threonine kinase 3	protein-coding
210786	chr7	100799421	100800050	+	0	NA	Intergenic	AluJr|SINE|Alu	-27134	NM_001363494	56996		NM_020246	ENSG00000146828	SLC12A9	CCC6|CIP1|WO3.3|hCCC6	solute carrier family 12 member 9	protein-coding
69997	chr14	100060471	100061600	+	0	NA	intron (NM_001330221, intron 1 of 13)	L1MEf|LINE|L1	-4387	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
112603	chr19	6733151	6733700	+	0	NA	intron (NM_020171, intron 8 of 17)	MIRb|SINE|MIR	3353	NR_106849	102465474		NR_106849	ENSG00000283950	MIR6791	hsa-mir-6791	microRNA 6791	ncRNA
207766	chr7	50151151	50151650	+	0	NA	intron (NM_001161834, intron 7 of 8)	intron (NM_001161834, intron 7 of 8)	55517	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
134717	chr2	144514721	144515000	+	0	NA	intron (NR_033258, intron 2 of 2)	intron (NR_033258, intron 2 of 2)	-4754	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
204719	chr7	5548501	5548700	+	0	NA	Intergenic	AluJo|SINE|Alu	-17999	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
231652	chr9	131645151	131645850	+	0	NA	intron (NM_001377936, intron 2 of 23)	intron (NM_001377936, intron 2 of 23)	5903	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
6941	chr1	31744301	31744850	+	0	NA	intron (NM_001294336, intron 5 of 31)	(AC)n|Simple_repeat|Simple_repeat	14160	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
239191	chrY	12906721	12907230	+	0	NA	intron (NR_136722, intron 1 of 15)	intron (NR_136722, intron 1 of 15)	1270	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
185833	chr5	132462451	132463230	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	27933	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
89145	chr16	88519701	88519900	+	0	NA	intron (NM_153813, intron 4 of 9)	(GGTG)n|Simple_repeat|Simple_repeat	11253	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
200442	chr6	135045571	135045730	+	0	NA	intron (NM_006620, intron 2 of 17)	AluSx1|SINE|Alu	9172	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
172655	chr4	2603971	2604130	+	0	NA	intron (NM_001366318, intron 2 of 20)	AluSx|SINE|Alu	-21382	NM_003704	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
62481	chr13	99387271	99387900	+	0	NA	Intergenic	Intergenic	31454	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
82397	chr16	16150671	16151250	+	0	NA	intron (NR_147784, intron 27 of 28)	MIRb|SINE|MIR	72511	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
57277	chr12	121631651	121631750	+	0	NA	intron (NM_032790, intron 2 of 2)	AluSx|SINE|Alu	5150	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
177732	chr4	122365001	122365400	+	0	NA	Intergenic	L1P2|LINE|L1	-13811	NM_139243	132612		NM_139243	ENSG00000164113	ADAD1	Tenr	adenosine deaminase domain containing 1	protein-coding
141401	chr2	240849921	240850600	+	0	NA	Intergenic	Intergenic	-18564	NM_000030	189		NM_000030	ENSG00000172482	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|Ser-PyrAT|TLH6	alanine--glyoxylate aminotransferase	protein-coding
120935	chr19	45670721	45671380	+	0	NA	intron (NM_001308418, intron 3 of 12)	intron (NM_001308418, intron 3 of 12)	2829	NM_000164	2696		NM_000164	ENSG00000010310	GIPR	PGQTL2	gastric inhibitory polypeptide receptor	protein-coding
112953	chr19	7787171	7787530	+	0	NA	promoter-TSS (NR_002931)	promoter-TSS (NR_002931)	-134	NR_002931	440508		NR_002931		CLEC4GP1	-	C-type lectin domain family 4 member G pseudogene 1	pseudo
231902	chr9	133085801	133086000	+	0	NA	intron (NR_001275, intron 3 of 4)	L4_C_Mam|LINE|RTE-X	3361	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
83372	chr16	25255271	25255630	+	0	NA	intron (NM_001012981, intron 1 of 6)	intron (NM_001012981, intron 1 of 6)	2395	NM_001012981	342357		NM_001012981	ENSG00000155592	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding
14896	chr1	147043871	147044030	+	0	NA	promoter-TSS (NR_024442)	promoter-TSS (NR_024442)	-911	NR_024442	728989		NR_024442		LOC728989	-	phosphodiesterase 4D interacting protein pseudogene	pseudo
167980	chr3	136725651	136726250	+	0	NA	intron (NM_005862, intron 1 of 33)	L2c|LINE|L2	26428	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
5157	chr1	24918971	24919580	+	0	NA	TTS (NR_106789)	TTS (NR_106789)	141	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
134560	chr2	144186101	144186380	+	0	NA	intron (NM_001354351, intron 7 of 15)	intron (NM_001354351, intron 7 of 15)	51099	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
148868	chr21	8434201	8434700	+	0	NA	non-coding (NR_046235, exon 1 of 1)	non-coding (NR_046235, exon 1 of 1)	1228	NR_046235	100861532		NR_046235		RNA45SN5	RNA45S5	RNA, 45S pre-ribosomal N5	rRNA
112704	chr19	7101671	7102630	+	0	NA	Intergenic	AluSq|SINE|Alu	32447	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
108752	chr18	77116671	77117150	+	0	NA	intron (NM_001025100, intron 1 of 3)	(AACACC)n|Simple_repeat|Simple_repeat	15873	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
122751	chr19	50105751	50106130	+	0	NA	Intergenic	AluSx1|SINE|Alu	1194	NR_024229	100170216		NR_024229		SNAR-A10	-	small NF90 (ILF3) associated RNA A10	snRNA
199827	chr6	127739801	127740200	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	115188	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
39257	chr11	57731101	57731500	+	0	NA	intron (NM_001347891, intron 2 of 7)	AluSx|SINE|Alu	-9950	NM_001321335	280636		NM_170746	ENSG00000211450	SELENOH	C11orf31|C17orf10|SELH	selenoprotein H	protein-coding
155131	chr22	37640901	37641950	+	0	NA	TTS (NR_109952)	TTS (NR_109952)	1756	NM_001350055	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
211584	chr7	105759371	105759800	+	0	NA	TTS (NM_152749)	TTS (NM_152749)	-80423	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
83901	chr16	28987721	28988480	+	0	NA	intron (NM_014387, intron 7 of 10)	AluJb|SINE|Alu	3048	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
15015	chr1	148263021	148264140	+	0	NA	Intergenic	U1|snRNA|snRNA	-16509	NR_120331	101927468		NR_120331	ENSG00000227733	LOC101927468	-	uncharacterized LOC101927468	ncRNA
35153	chr11	744921	745580	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2214	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
11182	chr1	87334941	87336150	+	0	NA	intron (NM_001369491, intron 2 of 4)	CpG	3801	NM_001369491	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
111928	chr19	4729221	4729480	+	0	NA	Intergenic	AluSx|SINE|Alu	-5508	NR_169285	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
204687	chr7	5504701	5505550	+	0	NA	intron (NM_024963, intron 2 of 4)	L1M5|LINE|L1	8684	NM_001363441	80028		NM_024963	ENSG00000155034	FBXL18	Fbl18	F-box and leucine rich repeat protein 18	protein-coding
134689	chr2	144484151	144484930	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-35074	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
26661	chr10	22604351	22604450	+	0	NA	intron (NM_001330062, intron 3 of 9)	intron (NM_001330062, intron 3 of 9)	109708	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
139941	chr2	230821821	230822800	+	0	NA	Intergenic	Intergenic	-41875	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
201007	chr6	140809601	140810000	+	0	NA	Intergenic	L1MB8|LINE|L1	125986	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
12586	chr1	108960801	108961830	+	0	NA	intron (NM_001377462, intron 1 of 11)	MER5A1|DNA|hAT-Charlie	2169	NM_001377458	23155		NM_015127	ENSG00000121940	CLCC1	MCLC|RP32	chloride channel CLIC like 1	protein-coding
131009	chr2	87824071	87824330	+	0	NA	intron (NM_001024457, intron 1 of 22).2	AluSx3|SINE|Alu	1567	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
145130	chr20	38815421	38815680	+	0	NA	intron (NM_001172735, intron 1 of 9)	L1ME4b|LINE|L1	9853	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
125968	chr2	25250551	25251400	+	0	NA	intron (NM_153759, intron 1 of 18)	intron (NM_153759, intron 1 of 18)	1156	NM_001320893	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
17570	chr1	156833621	156834280	+	0	NA	intron (NM_001007792, intron 1 of 16)	LTR50|LTR|ERVL	-17102	NM_001161441	9047		NM_003975	ENSG00000027869	SH2D2A	F2771|SCAP|TSAD|VRAP	SH2 domain containing 2A	protein-coding
178423	chr4	147782021	147782580	+	0	NA	promoter-TSS (NR_039962)	promoter-TSS (NR_039962)	-295	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
218514	chr8	53176871	53177230	+	0	NA	Intergenic	LTR55|LTR|ERVL?	74587	NM_001318497	4986		NM_000912	ENSG00000082556	OPRK1	K-OR-1|KOP|KOR|KOR-1|KOR1|OPRK	opioid receptor kappa 1	protein-coding
71921	chr15	22795001	22795200	+	0	NA	intron (NM_144599, intron 1 of 4)	intron (NM_144599, intron 1 of 4)	8456	NM_144599	123606		NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
162471	chr3	48516471	48517500	+	0	NA	TTS (NM_001317138)	TTS (NM_001317138)	-12159	NM_001272066	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
75929	chr15	70142121	70142680	+	0	NA	Intergenic	Intergenic	-44483	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
20309	chr1	197390121	197390380	+	0	NA	intron (NM_201253, intron 5 of 11)	intron (NM_201253, intron 5 of 11)	121998	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
199545	chr6	118814601	118814930	+	0	NA	non-coding (NR_165493, exon 12 of 12)	non-coding (NR_165493, exon 12 of 12)	32057	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
189086	chr5	170287521	170288350	+	0	NA	intron (NM_005565, intron 3 of 20)	intron (NM_005565, intron 3 of 20)	9842	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
236890	chrX	83811251	83811350	+	0	NA	Intergenic	L1MB1|LINE|L1	-49826	NM_001271680	1538		NM_021118	ENSG00000183035	CYLC1	CYCL1	cylicin 1	protein-coding
213964	chr7	142788171	142788900	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	17565	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
148896	chr21	8465101	8465480	+	0	NA	Intergenic	(CTCT)n|Simple_repeat|Simple_repeat	24144	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
38173	chr11	36334051	36334230	+	0	NA	intron (NM_001160167, intron 1 of 8)	MLT1J|LTR|ERVL-MaLR	37852	NM_001160167	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
137495	chr2	197150401	197150700	+	0	NA	intron (NM_153697, intron 2 of 9)	AluY|SINE|Alu	-47441	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
135318	chr2	160335221	160335580	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	-63505	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
72432	chr15	31488001	31489200	+	0	NA	intron (NM_130901, intron 11 of 13)	intron (NM_130901, intron 11 of 13)	161765	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
17621	chr1	156963001	156963900	+	0	NA	intron (NM_014784, intron 11 of 39)	intron (NM_014784, intron 11 of 39)	-27206	NR_030527	768220		NR_030527	ENSG00000211581	MIR765	MIRN765|hsa-mir-765|mir-765	microRNA 765	ncRNA
106608	chr18	22286521	22286830	+	0	NA	Intergenic	Intergenic	117086	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
91049	chr17	2909221	2909480	+	0	NA	intron (NM_001100398, intron 3 of 23)	L2c|LINE|L2	56545	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
95041	chr17	32505071	32505430	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	18257	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
97361	chr17	43302721	43303200	+	0	NA	Intergenic	Intergenic	-2729	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
72254	chr15	30555001	30555200	+	0	NA	exon (NM_001355476, exon 4 of 19)	exon (NM_001355476, exon 4 of 19)	3022	NM_001355476	727909		NM_001355476	ENSG00000178115	GOLGA8Q	-	golgin A8 family member Q	protein-coding
125996	chr2	25306671	25307180	+	0	NA	intron (NR_135490, intron 2 of 23)	intron (NR_135490, intron 2 of 23)	21796	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
118530	chr19	36032321	36033030	+	0	NA	promoter-TSS (NM_001199570)	promoter-TSS (NM_001199570)	-40	NM_001199570	25999		NM_015526	ENSG00000105270	CLIP3	CLIPR-59|CLIPR59|RSNL1	CAP-Gly domain containing linker protein 3	protein-coding
222032	chr8	130194621	130195330	+	0	NA	intron (NM_001362924, intron 5 of 30)	intron (NM_001362924, intron 5 of 30)	101558	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
223661	chr8	144372071	144373200	+	0	NA	non-coding (NR_134307, exon 1 of 2)	non-coding (NR_134307, exon 1 of 2)	236	NR_134307	101928902		NR_134307		LOC101928902	-	uncharacterized LOC101928902	ncRNA
208031	chr7	55879951	55880050	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7456	NM_001366796	349075		NM_182633	ENSG00000178665	ZNF713	-	zinc finger protein 713	protein-coding
37262	chr11	14655421	14655680	+	0	NA	intron (NM_001363569, intron 1 of 15)	L2c|LINE|L2	11746	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
36799	chr11	9568771	9569530	+	0	NA	Intergenic	Intergenic	-4520	NM_003390	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
209695	chr7	82727001	82727200	+	0	NA	Intergenic	Intergenic	-283144	NM_001366867	781		NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|DEE110|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding
131303	chr2	96111271	96112480	+	0	NA	Intergenic	MIRb|SINE|MIR	4696	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
106958	chr18	31650701	31650900	+	0	NA	intron (NM_001378109, intron 3 of 8)	AluY|SINE|Alu	33781	NM_004775	9331		NM_004775	ENSG00000118276	B4GALT6	B4Gal-T6|beta4Gal-T6	beta-1,4-galactosyltransferase 6	protein-coding
88766	chr16	86986701	86987400	+	0	NA	Intergenic	Intergenic	-70734	NR_126008	440390		NR_126008	ENSG00000232190	LINC02181	-	long intergenic non-protein coding RNA 2181	ncRNA
212352	chr7	127587151	127587250	+	0	NA	Intergenic	MIRb|SINE|MIR	-1211	NM_001662	381		NM_001662	ENSG00000004059	ARF5	-	ADP ribosylation factor 5	protein-coding
208304	chr7	66089251	66089550	+	0	NA	intron (NM_001024943, intron 12 of 15)	intron (NM_001024943, intron 12 of 15)	13581	NM_001024946	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
133050	chr2	112186971	112187130	+	0	NA	intron (NM_153214, intron 7 of 7)	intron (NM_153214, intron 7 of 7)	48665	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
14351	chr1	144002451	144002700	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-29056	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
10685	chr1	74010121	74010580	+	0	NA	Intergenic	LTR33C|LTR|ERVL	187826	NM_001322315	127255		NM_145258	ENSG00000162620	LRRIQ3	LRRC44	leucine rich repeats and IQ motif containing 3	protein-coding
170909	chr3	194103471	194104130	+	0	NA	Intergenic	Intergenic	-32348	NM_005524	3280		NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
229058	chr9	114344121	114344630	+	0	NA	intron (NM_001317952, intron 17 of 20)	MIR|SINE|MIR	14506	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
96338	chr17	40055501	40055930	+	0	NA	Intergenic	Intergenic	-1307	NR_052017	9862		NM_014815	ENSG00000008838	MED24	ARC100|CRSP100|CRSP4|DRIP100|MED5|THRAP4|TRAP100	mediator complex subunit 24	protein-coding
31840	chr10	99657551	99657930	+	0	NA	Intergenic	MER89|LTR|ERV1	-1769	NM_020354	57089		NM_020354	ENSG00000198018	ENTPD7	LALP1	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
85480	chr16	50697771	50698780	+	0	NA	intron (NM_022162, intron 1 of 11)	intron (NM_022162, intron 1 of 11)	-1105	NM_001293557	64127		NM_022162	ENSG00000167207	NOD2	ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS	nucleotide binding oligomerization domain containing 2	protein-coding
225146	chr9	33748571	33750050	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-1156	NM_001197097	5646		NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	serine protease 3	protein-coding
223805	chr8	144795971	144796330	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-2763	NM_001317936	340385		NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
126221	chr2	26969051	26969580	+	0	NA	Intergenic	L2b|LINE|L2	-1322	NM_012326	22924		NM_012326	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule associated protein RP/EB family member 3	protein-coding
63313	chr13	113998501	113998900	+	0	NA	intron (NM_001320822, intron 20 of 23).2	L1MC4|LINE|L1	-24624	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
125640	chr2	19389571	19389730	+	0	NA	Intergenic	L1PA4|LINE|L1	-31027	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
86515	chr16	67146971	67147330	+	0	NA	TTS (NM_033309)	TTS (NM_033309)	3848	NM_033309	84752		NM_033309	ENSG00000237172	B3GNT9	-	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding
207798	chr7	50269301	50269800	+	0	NA	Intergenic	Intergenic	-34514	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
219338	chr8	70222301	70222900	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	-151348	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
153459	chr22	25385651	25386350	+	0	NA	intron (NM_001135772, intron 1 of 6)	intron (NM_001135772, intron 1 of 6)	19408	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
16953	chr1	155930771	155930930	+	0	NA	intron (NM_014949, intron 2 of 13)	AluSq2|SINE|Alu	3563	NM_014949	22889		NM_014949	ENSG00000132680	KHDC4	BLOM7|KIAA0907|SNORA80EHG	KH domain containing 4, pre-mRNA splicing factor	protein-coding
170659	chr3	187318551	187319200	+	0	NA	Intergenic	Intergenic	-27138	NR_033519	5648		NM_001879	ENSG00000127241	MASP1	3MC1|CRARF|CRARF1|MAP-1|MAP1|MASP|MASP-3|MASP3|MAp44|PRSS5|RaRF	MBL associated serine protease 1	protein-coding
78880	chr15	100599851	100600150	+	0	NA	intron (NR_148017, intron 1 of 6)	AluSx|SINE|Alu	2184	NR_148018	55180		NM_018148	ENSG00000140471	LINS1	LINS|MRT27|WINS1	lines homolog 1	protein-coding
79737	chr16	1334301	1334750	+	0	NA	promoter-TSS (NM_003933)	promoter-TSS (NM_003933)	21	NM_003933	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
29897	chr10	73111151	73111330	+	0	NA	intron (NM_001283015, intron 1 of 7)	AluY|SINE|Alu	785	NM_001283015	25961		NM_015901	ENSG00000166321	NUDT13	-	nudix hydrolase 13	protein-coding
122939	chr19	50712201	50713010	+	0	NA	intron (NM_016148, intron 6 of 23)	intron (NM_016148, intron 6 of 23)	7197	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
19039	chr1	169691751	169692200	+	0	NA	intron (NM_000655, intron 8 of 8)	intron (NM_000655, intron 8 of 8)	16882	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
37591	chr11	19553651	19554000	+	0	NA	intron (NM_001111018, intron 2 of 38)	intron (NM_001111018, intron 2 of 38)	-21485	NR_039706	100616118		NR_039706	ENSG00000265210	MIR4486	-	microRNA 4486	ncRNA
194850	chr6	34459921	34460200	+	0	NA	Intergenic	Intergenic	-6016	NM_020804	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
148437	chr20	63973151	63973330	+	0	NA	TTS (NM_080621)	TTS (NM_080621)	-3310	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
163052	chr3	49905921	49906800	+	0	NA	Intergenic	Intergenic	-2487	NM_001244937	4486		NM_002447	ENSG00000164078	MST1R	CD136|CDw136|NPCA3|PTK8|RON|SEA|p185-Ron	macrophage stimulating 1 receptor	protein-coding
202598	chr6	158712221	158712830	+	0	NA	intron (NM_001242395, intron 8 of 15)	Ricksha_c|DNA|MULE-MuDR	49122	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
61165	chr13	49061401	49061700	+	0	NA	intron (NM_001079673, intron 2 of 25)	(CCTCT)n|Simple_repeat|Simple_repeat	-48767	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
95610	chr17	37565751	37565850	+	0	NA	intron (NM_001163544, intron 10 of 20).2	SVA_D|Retroposon|SVA	43618	NM_001163546	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
159633	chr3	15298071	15298430	+	0	NA	intron (NM_004844, intron 3 of 8)	AluJr|SINE|Alu	34336	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
174651	chr4	40744371	40744530	+	0	NA	Intergenic	Intergenic	-5505	NM_001330648	79730		NM_024677	ENSG00000179299	NSUN7	-	NOP2/Sun RNA methyltransferase family member 7	protein-coding
47923	chr12	6778421	6779650	+	0	NA	TTS (NM_002286)	TTS (NM_002286)	6515	NM_002286	3902		NM_002286	ENSG00000089692	LAG3	CD223	lymphocyte activating 3	protein-coding
59762	chr13	30121551	30122150	+	0	NA	Intergenic	Intergenic	-12975	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
188318	chr5	151211721	151212800	+	0	NA	intron (NR_160730, intron 1 of 3)	MIR3|SINE|MIR	126	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
180090	chr5	1137851	1138550	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-26137	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
126843	chr2	31325471	31325630	+	0	NA	Intergenic	L1ME3A|LINE|L1	89192	NM_000379	7498		NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
235794	chrX	49171321	49172000	+	0	NA	promoter-TSS (NM_002668)	promoter-TSS (NM_002668)	-238	NM_002668	5355		NM_002668	ENSG00000102007	PLP2	A4|A4LSB	proteolipid protein 2	protein-coding
47892	chr12	6738951	6739050	+	0	NA	Intergenic	AluY|SINE|Alu	13916	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
100185	chr17	58660671	58660830	+	0	NA	intron (NM_198393, intron 1 of 32)	intron (NM_198393, intron 1 of 32)	31295	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
61190	chr13	49254151	49254450	+	0	NA	intron (NM_030911, intron 2 of 9)	intron (NM_030911, intron 2 of 9)	6375	NR_036439	81602		NM_030911	ENSG00000102543	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
117165	chr19	19340251	19340950	+	0	NA	intron (NM_015329, intron 5 of 18)	AluY|SINE|Alu	19771	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
66979	chr14	66496971	66497130	+	0	NA	intron (NR_110308, intron 8 of 9)	intron (NR_110308, intron 8 of 9)	10679	NR_024338	440184		NM_001004331	ENSG00000196553	CCDC196	C14orf53|LINC00238|NCRNA00238	coiled-coil domain containing 196	protein-coding
174901	chr4	49094571	49095080	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	108183	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
87864	chr16	77211851	77212600	+	0	NA	intron (NM_001348924, intron 6 of 8)	CpG-9961	12817	NM_001129979	100130958		NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
192648	chr6	26167301	26167500	+	0	NA	intron (NM_138720, intron 1 of 1)	intron (NM_138720, intron 1 of 1)	9278	NM_021063	3017		NM_021063	ENSG00000158373	H2BC5	H2B.1B|H2B/a|H2B/b|H2B/g|H2B/h|H2B/k|H2B/l|H2BFA|H2BFB|H2BFG|H2BFH|H2BFK|H2BFL|HIRIP2|HIST1H2BC|HIST1H2BD|HIST1H2BE|HIST1H2BF|HIST1H2BG|HIST1H2BI|dJ221C16.6	H2B clustered histone 5	protein-coding
181388	chr5	40675201	40676180	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-4225	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
93016	chr17	17232701	17232900	+	0	NA	5' UTR (NM_001353230, exon 2 of 15)	5' UTR (NM_001353230, exon 2 of 15)	4368	NM_001353231	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
151622	chr22	12692851	12692950	+	0	NA	Intergenic	LSAU|Satellite|Satellite	795494	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
142018	chr20	1653801	1654000	+	0	NA	intron (NM_018556, intron 1 of 5)	L1MA8|LINE|L1	3879	NM_080816	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
67548	chr14	71246601	71246930	+	0	NA	Intergenic	Intergenic	-73711	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
235693	chrX	48728551	48729050	+	0	NA	Intergenic	Intergenic	32066	NM_003173	6839		NM_003173	ENSG00000101945	SUV39H1	H3-K9-HMTase 1|KMT1A|MG44|SUV39H	SUV39H1 histone lysine methyltransferase	protein-coding
114863	chr19	13864021	13864480	+	0	NA	promoter-TSS (NR_146097)	promoter-TSS (NR_146097)	-953	NR_146097	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
159734	chr3	15812121	15812550	+	0	NA	intron (NM_015199, intron 1 of 27)	intron (NM_015199, intron 1 of 27)	-14151	NR_146111	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
107314	chr18	45008871	45009330	+	0	NA	intron (NM_001379141, intron 4 of 5)	intron (NM_001379141, intron 4 of 5)	-38934	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
108880	chr18	79397271	79397600	+	0	NA	intron (NM_172388, intron 1 of 8)	CpG-12705	1505	NM_001278669	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
195456	chr6	37007321	37007580	+	0	NA	intron (NM_173558, intron 1 of 15)	intron (NM_173558, intron 1 of 15)	1795	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
144222	chr20	34374471	34374630	+	0	NA	intron (NM_031483, intron 2 of 24)	intron (NM_031483, intron 2 of 24)	11277	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
133444	chr2	119517471	119517630	+	0	NA	intron (NM_002980, intron 1 of 12)	intron (NM_002980, intron 1 of 12)	6933	NM_002980	6344		NM_002980	ENSG00000080293	SCTR	SR	secretin receptor	protein-coding
41245	chr11	65788191	65789900	+	0	NA	TTS (NR_108085)	TTS (NR_108085)	1823	NR_108085	101927828		NR_108085	ENSG00000255120	OVOL1-AS1	-	OVOL1 antisense RNA 1	ncRNA
171250	chr3	195816721	195817250	+	0	NA	Intergenic	Intergenic	-5012	NM_001322468	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
124755	chr2	6922251	6923050	+	0	NA	intron (NM_001349184, intron 1 of 8)	AluY|SINE|Alu	3856	NM_001349184	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
73580	chr15	44506271	44506980	+	0	NA	intron (NM_016396, intron 8 of 12)	AluJb|SINE|Alu	30275	NR_034171	645212		NR_034170	ENSG00000179523	EIF3J-DT	EIF3J-AS1	EIF3J divergent transcript	ncRNA
149185	chr21	22421271	22421830	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	322933	NR_038400	54143		NM_153203	ENSG00000184856	LINC00308	C21orf74|NCRNA00308|PRED16	long intergenic non-protein coding RNA 308	ncRNA
82027	chr16	12059701	12060100	+	0	NA	intron (NM_032167, intron 8 of 20)	MIRc|SINE|MIR	83166	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
72615	chr15	37110301	37110530	+	0	NA	Intergenic	Intergenic	-9104	NM_001220482	4212		NM_002399	ENSG00000134138	MEIS2	CPCMR|HsT18361|MRG1	Meis homeobox 2	protein-coding
211036	chr7	102423421	102423680	+	0	NA	intron (NR_038967, intron 8 of 8)	MIR|SINE|MIR	-9980	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
175777	chr4	77790521	77790780	+	0	NA	intron (NM_001365006, intron 1 of 11)	intron (NM_001365006, intron 1 of 11)	28414	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
46651	chr11	128697901	128698900	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-2377	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
52467	chr12	55956971	55958180	+	0	NA	exon (NM_001320122, exon 6 of 12)	exon (NM_001320122, exon 6 of 12)	8467	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
237383	chrX	119468901	119469950	+	0	NA	promoter-TSS (NR_028443)	promoter-TSS (NR_028443)	-305	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
165379	chr3	93981621	93982080	+	0	NA	intron (NM_144996, intron 1 of 7)	AluJb|SINE|Alu	1695	NR_033427	200894		NM_144996	ENSG00000169379	ARL13B	ARL2L1|JBTS8	ADP ribosylation factor like GTPase 13B	protein-coding
221356	chr8	123273751	123275430	+	0	NA	promoter-TSS (NR_037874)	promoter-TSS (NR_037874)	-103	NM_001017926	11244		NM_007222	ENSG00000165156	ZHX1	-	zinc fingers and homeoboxes 1	protein-coding
20107	chr1	192003771	192003930	+	0	NA	Intergenic	Intergenic	-154612	NM_130782	64407		NM_130782	ENSG00000150681	RGS18	RGS13	regulator of G protein signaling 18	protein-coding
101810	chr17	73401971	73402150	+	0	NA	exon (NM_001144952, exon 19 of 45)	exon (NM_001144952, exon 19 of 45)	-90059	NM_012121	23580		NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein 4	protein-coding
72774	chr15	39893921	39894180	+	0	NA	intron (NM_001271854, intron 1 of 3)	SVA_F|Retroposon|SVA	26216	NM_001271854	11245		NM_007223	ENSG00000166073	GPR176	HB-954	G protein-coupled receptor 176	protein-coding
86134	chr16	57686501	57686700	+	0	NA	intron (NM_170776, intron 11 of 11)	intron (NM_170776, intron 11 of 11)	-8206	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
23012	chr1	226186211	226187450	+	0	NA	promoter-TSS (NM_022735)	promoter-TSS (NM_022735)	-89	NM_022735	64746		NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
123235	chr19	52941971	52943450	+	0	NA	promoter-TSS (NR_037805)	promoter-TSS (NR_037805)	-116	NR_037805	399669		NM_203307	ENSG00000293246	ZNF321P	ZNF321	zinc finger protein 321, pseudogene	pseudo
192960	chr6	27836421	27837700	+	0	NA	TTS (NM_003510)	TTS (NM_003510)	1315	NM_003510	8330		NM_003510	ENSG00000275221	H2AC15	H2A.1|H2A/d|H2AC11|H2AC13|H2AC14|H2AC16|H2AC17|H2AFD|HIST1H2AK	H2A clustered histone 15	protein-coding
3391	chr1	15734121	15734680	+	0	NA	3' UTR (NM_015164, exon 20 of 20)	3' UTR (NM_015164, exon 20 of 20)	-1858	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
44934	chr11	116732401	116733100	+	0	NA	Intergenic	Intergenic	40237	NM_032725	84811		NM_032725	ENSG00000137656	BUD13	Cwc26|fSAP71	BUD13 homolog	protein-coding
33497	chr10	119131221	119132730	+	0	NA	intron (NM_207009, intron 7 of 8)	intron (NM_207009, intron 7 of 8)	27862	NM_001303111	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
216593	chr8	22042571	22043550	+	0	NA	intron (NM_001304478, intron 1 of 4)	intron (NM_001304478, intron 1 of 4)	240	NM_003867	8822		NM_003867	ENSG00000158815	FGF17	FGF-13|FGF-17|HH20	fibroblast growth factor 17	protein-coding
130681	chr2	86447571	86447730	+	0	NA	intron (NM_001146688, intron 2 of 25)	intron (NM_001146688, intron 2 of 25)	6189	NM_001146688	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
219790	chr8	81186921	81187600	+	0	NA	Intergenic	Intergenic	-75192	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
207330	chr7	44051901	44052330	+	0	NA	TTS (NR_106896)	TTS (NR_106896)	349	NR_106896	102466985		NR_106896	ENSG00000284067	MIR6837	hsa-mir-6837	microRNA 6837	ncRNA
173209	chr4	6873651	6874330	+	0	NA	intron (NM_014743, intron 8 of 9)	intron (NM_014743, intron 8 of 9)	-35454	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
85266	chr16	48555121	48555380	+	0	NA	intron (NM_153029, intron 2 of 6)	intron (NM_153029, intron 2 of 6)	54930	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
117504	chr19	19997701	19997930	+	0	NA	Intergenic	Intergenic	41440	NM_001077349	91120		NM_033196	ENSG00000197124	ZNF682	BC39498_3	zinc finger protein 682	protein-coding
127551	chr2	42343651	42343950	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	16238	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
179558	chr4	185182801	185183000	+	0	NA	intron (NM_001292033, intron 2 of 3)	AluSx|SINE|Alu	21100	NM_020827	57587		NM_020827	ENSG00000164323	CFAP97	KIAA1430|hmw	cilia and flagella associated protein 97	protein-coding
39777	chr11	61919451	61919850	+	0	NA	intron (NM_001271686, intron 1 of 8)	intron (NM_001271686, intron 1 of 8)	634	NM_001271686	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
199321	chr6	113226951	113227050	+	0	NA	Intergenic	L1PA2|LINE|L1	206447	NR_149098	105377957		NR_149098	ENSG00000232316	LINC02518	-	long intergenic non-protein coding RNA 2518	ncRNA
227262	chr9	89363751	89364130	+	0	NA	exon (NM_001142287, exon 19 of 21)	exon (NM_001142287, exon 19 of 21)	45089	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
201834	chr6	150070821	150071480	+	0	NA	Intergenic	Intergenic	-2029	NM_024518	79465		NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
80441	chr16	2654921	2655180	+	0	NA	Intergenic	Intergenic	16068	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
63235	chr13	113929671	113929930	+	0	NA	promoter-TSS (NR_047495)	promoter-TSS (NR_047495)	-809	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
138833	chr2	216413801	216414000	+	0	NA	intron (NM_014140, intron 2 of 17)	intron (NM_014140, intron 2 of 17)	1135	NM_001127207	50485		NM_014140	ENSG00000138375	SMARCAL1	HARP|HHARP	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1	protein-coding
146509	chr20	49907501	49907700	+	0	NA	intron (NM_001135773, intron 2 of 2)	intron (NM_001135773, intron 2 of 2)	6139	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
164475	chr3	59981371	59981680	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	99384	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
110067	chr19	1494751	1494850	+	0	NA	intron (NM_138393, intron 1 of 4)	AluY|SINE|Alu	3619	NM_138393	92840		NM_138393	ENSG00000115255	REEP6	C19orf32|DP1L1|REEP6.1|REEP6.2|RP77|TB1|TB2L1|Yip2f	receptor accessory protein 6	protein-coding
225179	chr9	33922021	33922580	+	0	NA	non-coding (NR_163243, exon 25 of 25)	non-coding (NR_163243, exon 25 of 25)	12064	NM_001282530	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
161156	chr3	39090901	39091130	+	0	NA	intron (NM_001346226, intron 16 of 18)	intron (NM_001346226, intron 16 of 18)	16612	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
94980	chr17	32269321	32269650	+	0	NA	intron (NM_001363836, intron 2 of 8)	intron (NM_001363836, intron 2 of 8)	3309	NM_001363835	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
107087	chr18	35037871	35038480	+	0	NA	intron (NM_001143826, intron 2 of 7)	intron (NM_001143826, intron 2 of 7)	-3238	NR_046177	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
237089	chrX	103920501	103921280	+	0	NA	intron (NM_001350211, intron 1 of 3)	intron (NM_001350211, intron 1 of 3)	-1342	NR_146557	100128594		NR_146556		TMSB15B-AS1	-	TMSB15B antisense RNA 1	ncRNA
165073	chr3	71464721	71465100	+	0	NA	intron (NM_001012505, intron 3 of 6)	MIR|SINE|MIR	77179	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
144197	chr20	34301151	34301650	+	0	NA	intron (NM_001161766, intron 1 of 9)	intron (NM_001161766, intron 1 of 9)	1590	NM_001322086	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
219461	chr8	73168351	73169300	+	0	NA	Intergenic	Intergenic	-75653	NM_153225	157869		NM_153225	ENSG00000164764	SBSPON	C8orf84|RPESP	somatomedin B and thrombospondin type 1 domain containing	protein-coding
55385	chr12	104402571	104402930	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-54198	NM_018413	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
40817	chr11	64923751	64925330	+	0	NA	promoter-TSS (NM_006244)	promoter-TSS (NM_006244)	-149	NM_006244	5526		NM_006244	ENSG00000068971	PPP2R5B	B56B|B56beta|PR61B	protein phosphatase 2 regulatory subunit B'beta	protein-coding
30889	chr10	86964651	86964750	+	0	NA	Intergenic	Intergenic	-3782	NM_006829	10974		NM_006829	ENSG00000148671	ADIRF	AFRO|APM2|C10orf116|apM-2	adipogenesis regulatory factor	protein-coding
70516	chr14	102308401	102308600	+	0	NA	Intergenic	Intergenic	-3336	NR_148555	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
189534	chr5	173891201	173891600	+	0	NA	intron (NM_030627, intron 1 of 9)	intron (NM_030627, intron 1 of 9)	-1651	NM_001308192	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
40034	chr11	62687801	62688400	+	0	NA	exon (NM_203422, exon 2 of 2)	exon (NM_203422, exon 2 of 2)	1430	NM_203422	221091		NM_203422	ENSG00000177363	LRRN4CL	-	LRRN4 C-terminal like	protein-coding
156885	chr22	42143551	42143850	+	0	NA	intron (NR_111920, intron 1 of 9)	intron (NR_111920, intron 1 of 9)	783	NR_002570	1564		NM_001002910		CYP2D7	CYP2D|CYP2D6|CYP2D7AP|CYP2D7P|CYP2D7P1|CYP2D@|P450C2D|P450DB1|RNA40057	cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)	protein-coding
128256	chr2	54568171	54568330	+	0	NA	intron (NM_178313, intron 1 of 30)	AluSx|SINE|Alu	9856	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
213132	chr7	131366601	131366880	+	0	NA	intron (NM_001321316, intron 1 of 17)	AluSx1|SINE|Alu	38864	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
120502	chr19	44778551	44778650	+	0	NA	intron (NM_012116, intron 1 of 10)	MSR1|Satellite|Satellite	710	NM_012116	23624		NM_012116	ENSG00000142273	CBLC	CBL-3|CBL-SL|RNF57	Cbl proto-oncogene C	protein-coding
26879	chr10	25874351	25874450	+	0	NA	Intergenic	(AGGGA)n|Simple_repeat|Simple_repeat	59310	NR_120650	101929073		NR_120650	ENSG00000226304	LOC101929073	-	uncharacterized LOC101929073	ncRNA
210264	chr7	99402751	99403250	+	0	NA	intron (NM_014891, intron 3 of 5)	L2c|LINE|L2	5597	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
231535	chr9	131444071	131444480	+	0	NA	exon (NM_001384822, exon 6 of 31)	exon (NM_001384822, exon 6 of 31)	-41390	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
207284	chr7	43990851	43991650	+	0	NA	intron (NR_003655, intron 4 of 15)	intron (NR_003655, intron 4 of 15)	-6618	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
202566	chr6	158678221	158678480	+	0	NA	intron (NM_001318745, intron 2 of 14)	intron (NM_001318745, intron 2 of 14)	14947	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
82199	chr16	14977971	14978230	+	0	NA	intron (NM_001324019, intron 1 of 22)	intron (NM_001324019, intron 1 of 22)	3074	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
60662	chr13	42991911	42993480	+	0	NA	promoter-TSS (NM_001330543)	promoter-TSS (NM_001330543)	-454	NM_001331228	94240		NM_033255	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1	protein-coding
194782	chr6	34163471	34164130	+	0	NA	Intergenic	Intergenic	-8178	NM_001256809	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
186630	chr5	138546801	138547300	+	0	NA	Intergenic	AluSx|SINE|Alu	-3814	NM_001364160	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
232187	chr9	134195571	134195930	+	0	NA	Intergenic	Intergenic	-31186	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
174378	chr4	39015601	39016150	+	0	NA	intron (NM_001303228, intron 1 of 6)	THE1B|LTR|ERVL-MaLR	16534	NM_024943	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
102189	chr17	75156521	75157050	+	0	NA	Intergenic	AluY|SINE|Alu	-2273	NM_001002033	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
90080	chr16	90016701	90016900	+	0	NA	intron (NM_001288708, intron 1 of 4)	intron (NM_001288708, intron 1 of 4)	2656	NM_001042610	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
32472	chr10	102655751	102656280	+	0	NA	intron (NR_144321, intron 3 of 5)	intron (NR_144321, intron 3 of 5)	11520	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
137213	chr2	191302471	191302750	+	0	NA	intron (NM_001161819, intron 3 of 30)	intron (NM_001161819, intron 3 of 30)	57206	NM_001330238	4430		NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
172532	chr4	2319951	2320450	+	0	NA	exon (NM_001172656, exon 6 of 12)	exon (NM_001172656, exon 6 of 12)	44614	NM_001172660	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
38008	chr11	35080271	35080630	+	0	NA	Intergenic	AluJb|SINE|Alu	57582	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
57757	chr12	122977651	122978150	+	0	NA	intron (NM_001304835, intron 4 of 6)	intron (NM_001304835, intron 4 of 6)	-2160	NM_001002252	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
78133	chr15	90387571	90390180	+	0	NA	intron (NM_003870, intron 1 of 37)	MIR3|SINE|MIR	633	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
200711	chr6	137492921	137493700	+	0	NA	3' UTR (NM_175747, exon 1 of 1)	3' UTR (NM_175747, exon 1 of 1)	1084	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
233429	chr9	137609601	137610200	+	0	NA	intron (NM_001317968, intron 1 of 6)	AluY|SINE|Alu	4214	NM_152285	92714		NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
137982	chr2	201221071	201221230	+	0	NA	3' UTR (NM_001206524, exon 8 of 8)	3' UTR (NM_001206524, exon 8 of 8)	-12293	NM_001228	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
103427	chr17	78250521	78253300	+	0	NA	non-coding (NR_164160, exon 2 of 2)	non-coding (NR_164160, exon 2 of 2)	3594	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
164562	chr3	63995121	63995580	+	0	NA	intron (NM_001177387, intron 10 of 12)	intron (NM_001177387, intron 10 of 12)	-8672	NR_038286	100507062		NR_038286	ENSG00000239653	PSMD6-AS2	-	PSMD6 antisense RNA 2	ncRNA
238336	chrX	149539901	149541850	+	0	NA	promoter-TSS (NM_001324280)	promoter-TSS (NM_001324280)	-137	NM_001324280	91966		NM_178124	ENSG00000197620	EOLA1	CXorf40|CXorf40A	endothelium and lymphocyte associated ASCH domain 1	protein-coding
223536	chr8	144140201	144140550	+	0	NA	3' UTR (NM_016458, exon 6 of 6)	3' UTR (NM_016458, exon 6 of 6)	2601	NM_016458	51236		NM_016458	ENSG00000235173	HGH1	BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B	HGH1 homolog	protein-coding
40947	chr11	65318221	65318730	+	0	NA	intron (NM_006779, intron 1 of 1)	AluY|SINE|Alu	3609	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
110106	chr19	1554301	1554500	+	0	NA	TTS (NM_001174118)	TTS (NM_001174118)	13658	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
67756	chr14	73718571	73718730	+	0	NA	3' UTR (NM_194278, exon 12 of 12)	3' UTR (NM_194278, exon 12 of 12)	-4266	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
88781	chr16	87316751	87318250	+	0	NA	promoter-TSS (NM_001195125)	promoter-TSS (NM_001195125)	-9	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
92370	chr17	8218971	8219200	+	0	NA	Intergenic	AluSx|SINE|Alu	4958	NR_026951	284029		NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324|RNA00324|TP53LC03	long intergenic non-protein coding RNA 324	ncRNA
63554	chr14	20341021	20341550	+	0	NA	Intergenic	AluSz|SINE|Alu	2126	NR_002312	85495		NR_002312	ENSG00000277209	RPPH1	H1RNA|RPPH1-1	ribonuclease P RNA component H1	ncRNA
146330	chr20	49232071	49232830	+	0	NA	intron (NM_001348187, intron 10 of 21)	AluSp|SINE|Alu	13034	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
210600	chr7	100424521	100424780	+	0	NA	intron (NM_001258008, intron 2 of 15)	AluSc|SINE|Alu	4053	NM_001258008	55063		NM_017984	ENSG00000078487	ZCWPW1	ZCW1	zinc finger CW-type and PWWP domain containing 1	protein-coding
218161	chr8	41933251	41933350	+	0	NA	exon (NM_006766, exon 17 of 17)	exon (NM_006766, exon 17 of 17)	-36559	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
97386	chr17	43357701	43358100	+	0	NA	Intergenic	PRIMA41-int|LTR|ERV1	30998	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
120987	chr19	45734151	45734250	+	0	NA	intron (NM_001310124, intron 1 of 14)	intron (NM_001310124, intron 1 of 14)	761	NM_001310124	388553		NM_001310124	ENSG00000237452	MEIOSIN	BHMG1|HMGDC	meiosis initiator	protein-coding
130064	chr2	74463301	74463830	+	0	NA	intron (NM_006302, intron 2 of 3)	intron (NM_006302, intron 2 of 3)	1817	NM_006302	7841		NM_006302	ENSG00000115275	MOGS	CDG2B|CWH41|DER7|GCS1	mannosyl-oligosaccharide glucosidase	protein-coding
16459	chr1	154589921	154590180	+	0	NA	intron (NM_001365049, intron 8 of 15)	intron (NM_001365049, intron 8 of 15)	16203	NM_001193495	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
223811	chr8	144804971	144805500	+	0	NA	intron (NR_134285, intron 3 of 3)	LTR13|LTR|ERVK	6322	NM_213605	340385		NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
74163	chr15	55286551	55287830	+	0	NA	intron (NM_183235, intron 1 of 6)	AluSx1|SINE|Alu	2623	NM_183235	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
111839	chr19	4557601	4557900	+	0	NA	intron (NM_032108, intron 3 of 16)	L2|LINE|L2	1934	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
55418	chr12	104488271	104488830	+	0	NA	intron (NM_018413, intron 1 of 2)	PRIMA4-int|LTR|ERV1	31602	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
63042	chr13	113001251	113001700	+	0	NA	promoter-TSS (NM_024979)	promoter-TSS (NM_024979)	-239	NM_001320817	23263		NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
156004	chr22	39933841	39934450	+	0	NA	intron (NM_001291828, intron 1 of 4)	L3|LINE|CR1	7541	NM_001291828	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
210950	chr7	101320071	101320430	+	0	NA	intron (NM_001130821, intron 1 of 4)	AluSq2|SINE|Alu	1562	NM_001287525	64792		NM_022777	ENSG00000128581	IFT22	CFAP9|FAP9|RABL5	intraflagellar transport 22	protein-coding
214398	chr7	149790951	149791130	+	0	NA	non-coding (NR_163594, exon 31 of 103)	non-coding (NR_163594, exon 31 of 103)	14998	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
207509	chr7	44772821	44773080	+	0	NA	Intergenic	AluJb|SINE|Alu	16762	NM_174929	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
137507	chr2	197168671	197169500	+	0	NA	intron (NM_153697, intron 2 of 9)	L2b|LINE|L2	-28906	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
149269	chr21	26686371	26686530	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-113164	NR_135472	116159		NM_052954	ENSG00000166265	CYYR1	C21orf95	cysteine and tyrosine rich 1	protein-coding
217013	chr8	23180601	23181130	+	0	NA	Intergenic	LOR1a|LTR|ERV1	-16838	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
156331	chr22	40683021	40683830	+	0	NA	TTS (NM_005297)	TTS (NM_005297)	3941	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
3384	chr1	15728671	15728850	+	0	NA	intron (NM_015164, intron 12 of 19)	intron (NM_015164, intron 12 of 19)	-7498	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
49189	chr12	15562351	15562880	+	0	NA	intron (NM_030671, intron 5 of 13)	intron (NM_030671, intron 5 of 13)	16004	NM_030668	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
179770	chr5	296671	297830	+	0	NA	intron (NM_001267557, intron 2 of 3)	intron (NM_001267557, intron 2 of 3)	-24464	NM_001377236	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
39117	chr11	48093601	48094350	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-2807	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
85806	chr16	56974651	56975250	+	0	NA	intron (NM_000078, intron 9 of 15)	intron (NM_000078, intron 9 of 15)	13000	NM_000078	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
204635	chr7	5401251	5401980	+	0	NA	intron (NM_001080495, intron 2 of 29)	intron (NM_001080495, intron 2 of 29)	21931	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
44047	chr11	95162601	95162800	+	0	NA	Intergenic	Intergenic	12161	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
88992	chr16	87946951	87947600	+	0	NA	Intergenic	L2|LINE|L2	-1963	NM_001384918	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
176573	chr4	98659571	98659730	+	0	NA	intron (NR_148380, intron 1 of 2)	intron (NR_148380, intron 1 of 2)	748	NR_148380	105377342		NR_148380		TSPAN5-DT	-	TSPAN5 divergent transcript	ncRNA
80240	chr16	2199201	2200030	+	0	NA	Intergenic	Intergenic	-3010	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
146284	chr20	49111621	49112280	+	0	NA	Intergenic	AluSz|SINE|Alu	65638	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
88823	chr16	87416721	87417100	+	0	NA	intron (NM_015144, intron 8 of 12)	intron (NM_015144, intron 8 of 12)	24574	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
9467	chr1	50611621	50611920	+	0	NA	intron (NM_007051, intron 8 of 18)	intron (NM_007051, intron 8 of 18)	-188327	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
27382	chr10	31031271	31032720	+	0	NA	promoter-TSS (NM_001143766)	promoter-TSS (NM_001143766)	-58	NM_001143766	220929		NM_182755	ENSG00000183621	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
53621	chr12	68152451	68152750	+	0	NA	Intergenic	Intergenic	7140	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
212184	chr7	117009171	117009850	+	0	NA	intron (NR_161422, intron 1 of 14)	intron (NR_161422, intron 1 of 14)	-5402	NM_001369602	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
143273	chr20	25198751	25199300	+	0	NA	intron (NM_001322390, intron 2 of 14)	L2|LINE|L2	-2133	NR_109994	101926889		NR_109994		LOC101926889	-	uncharacterized LOC101926889	ncRNA
192254	chr6	20213571	20213750	+	0	NA	Intergenic	(CACA)n|Simple_repeat|Simple_repeat	-1191	NM_001080480	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
27518	chr10	32302951	32303450	+	0	NA	intron (NR_168511, intron 2 of 13)	AluSz|SINE|Alu	43958	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
75375	chr15	65638371	65639250	+	0	NA	intron (NM_004727, intron 3 of 9)	G-rich|Low_complexity|Low_complexity	-4069	NM_001254740	9187		NM_004727	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 member 1	protein-coding
48964	chr12	12909351	12909650	+	0	NA	intron (NM_003979, intron 2 of 3)	intron (NM_003979, intron 2 of 3)	-6329	NR_030345	693199		NR_030345	ENSG00000283759	MIR614	MIRN614|hsa-mir-614	microRNA 614	ncRNA
183741	chr5	81287271	81287780	+	0	NA	intron (NR_034122, intron 1 of 3)	AluSq|SINE|Alu	14044	NR_034122	100131067		NR_034121	ENSG00000247572	CKMT2-AS1	-	CKMT2 antisense RNA 1	ncRNA
173584	chr4	10161471	10162350	+	0	NA	Intergenic	Intergenic	-45111	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
35213	chr11	816951	817050	+	0	NA	Intergenic	AluY|SINE|Alu	-1914	NM_020376	57104		NM_020376	ENSG00000177666	PNPLA2	1110001C14Rik|ATGL|FP17548|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin like phospholipase domain containing 2	protein-coding
166146	chr3	111552351	111552830	+	0	NA	intron (NR_134917, intron 2 of 14)	MER58A|DNA|hAT-Charlie	10393	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
195571	chr6	37499321	37500250	+	0	NA	intron (NM_138493, intron 1 of 3)	CpG	108	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
106481	chr18	14415671	14416080	+	0	NA	Intergenic	Intergenic	78452	NR_026756	284233		NR_026756	ENSG00000290462	CYP4F35P	-	cytochrome P450 family 4 subfamily F member 35, pseudogene	pseudo
117289	chr19	19484101	19484650	+	0	NA	intron (NM_001384541, intron 2 of 10)	AluJr|SINE|Alu	31173	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
32575	chr10	103450551	103451600	+	0	NA	intron (NR_046344, intron 2 of 3)	intron (NR_046344, intron 2 of 3)	1295	NR_046344	51063		NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator family member 2	protein-coding
100269	chr17	59608801	59609000	+	0	NA	TTS (NM_001166301)	TTS (NM_001166301)	-10789	NM_001288653	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
22729	chr1	224205521	224205830	+	0	NA	Intergenic	Intergenic	7604	NR_110669	101927143		NR_110669	ENSG00000232628	LOC101927143	-	uncharacterized LOC101927143	ncRNA
75423	chr15	65783301	65783830	+	0	NA	intron (NM_001376919, intron 1 of 31)	L1MC3|LINE|L1	8728	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
230267	chr9	127915401	127916390	+	0	NA	intron (NM_175040, intron 1 of 4)	intron (NM_175040, intron 1 of 4)	1131	NM_175040	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
78406	chr15	92046651	92046750	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	192396	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
167756	chr3	132432651	132433250	+	0	NA	intron (NM_015268, intron 1 of 55)	Charlie10|DNA|hAT-Charlie	15448	NM_015268	23317		NM_015268	ENSG00000138246	DNAJC13	PARK21|RME8	DnaJ heat shock protein family (Hsp40) member C13	protein-coding
153541	chr22	26584301	26584850	+	0	NA	intron (NM_001362923, intron 1 of 7)	AluJr|SINE|Alu	5557	NM_003595	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
78355	chr15	91307751	91308500	+	0	NA	Intergenic	Intergenic	-155214	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
47501	chr12	4027101	4028050	+	0	NA	Intergenic	Intergenic	-154127	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
122828	chr19	50416501	50416700	+	0	NA	intron (NR_046402, intron 22 of 25)	intron (NR_046402, intron 22 of 25)	-2338	NM_003121	6689		NM_003121	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor	protein-coding
12292	chr1	100746071	100746430	+	0	NA	Intergenic	AluJb|SINE|Alu	26508	NM_001078	7412		NM_001078	ENSG00000162692	VCAM1	CD106|INCAM-100	vascular cell adhesion molecule 1	protein-coding
66095	chr14	59483721	59485230	+	0	NA	promoter-TSS (NM_001098625)	promoter-TSS (NM_001098625)	32	NM_001284204	51528		NM_016475	ENSG00000050130	JKAMP	C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP	JNK1/MAPK8 associated membrane protein	protein-coding
175621	chr4	76129651	76129950	+	0	NA	intron (NR_103780, intron 7 of 10)	AluY|SINE|Alu	18597	NM_017426	53371		NM_017426	ENSG00000138750	NUP54	DYT37	nucleoporin 54	protein-coding
62466	chr13	99366651	99366750	+	0	NA	intron (NR_026644, intron 7 of 8)	L1ME3Cz|LINE|L1	10569	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
169529	chr3	170156271	170156430	+	0	NA	intron (NM_001308116, intron 4 of 14)	AluSx1|SINE|Alu	25383	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
176240	chr4	86891921	86892600	+	0	NA	5' UTR (NM_001369888, exon 1 of 4)	5' UTR (NM_001369888, exon 1 of 4)	162	NM_001369888	132989		NM_144645	ENSG00000163633	C4orf36	-	chromosome 4 open reading frame 36	protein-coding
96682	chr17	41133951	41134250	+	0	NA	intron (NM_001277332, intron 3 of 5)	intron (NM_001277332, intron 3 of 5)	6387	NM_030976	81871		NM_030976	ENSG00000198090	KRTAP4-6	KAP4.15|KAP4.6|KRTAP4-15|KRTAP4.15	keratin associated protein 4-6	protein-coding
135975	chr2	172103701	172104900	+	0	NA	intron (NR_126376, intron 2 of 4)	intron (NR_126376, intron 2 of 4)	1294	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
215797	chr8	2203351	2204150	+	0	NA	Intergenic	Intergenic	127161	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
196623	chr6	44262571	44264000	+	0	NA	intron (NM_004556, intron 1 of 5)	intron (NM_004556, intron 1 of 5)	2266	NM_004556	4794		NM_004556	ENSG00000146232	NFKBIE	IKBE	NFKB inhibitor epsilon	protein-coding
30676	chr10	80502251	80502550	+	0	NA	intron (NM_001128309, intron 2 of 5)	L2a|LINE|L2	33542	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
93228	chr17	17843871	17844630	+	0	NA	3' UTR (NM_001288787, exon 14 of 14)	3' UTR (NM_001288787, exon 14 of 14)	-7239	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
52784	chr12	56700301	56700800	+	0	NA	Intergenic	AluY|SINE|Alu	-12142	NM_001282604	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
72114	chr15	28947501	28947700	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	13596	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
66060	chr14	58393851	58394150	+	0	NA	Intergenic	Intergenic	-1930	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
53570	chr12	67651301	67651980	+	0	NA	intron (NM_006482, intron 2 of 2)	intron (NM_006482, intron 2 of 2)	2895	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
131236	chr2	95655471	95655730	+	0	NA	Intergenic	Intergenic	63599	NM_138800	129868		NM_138800	ENSG00000144015	TRIM43	TRIM43A	tripartite motif containing 43	protein-coding
102265	chr17	75283971	75284800	+	0	NA	intron (NM_001126121, intron 4 of 7)	AluSx4|SINE|Alu	5048	NM_001126121	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
154288	chr22	31678701	31679100	+	0	NA	Intergenic	AluJr|SINE|Alu	-16336	NM_001326421	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
127476	chr2	42232271	42232630	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-62219	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226346	chr9	69672901	69673350	+	0	NA	promoter-TSS (NM_001163)	promoter-TSS (NM_001163)	-754	NM_001163	320		NM_001163	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta precursor protein binding family A member 1	protein-coding
86635	chr16	67438451	67438750	+	0	NA	exon (NM_004691, exon 8 of 8)	exon (NM_004691, exon 8 of 8)	7479	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
143540	chr20	31577501	31578930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4952	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
171964	chr4	903151	903680	+	0	NA	intron (NM_001318134, intron 2 of 24)	intron (NM_001318134, intron 2 of 24)	28901	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
36547	chr11	6609671	6610330	+	0	NA	exon (NM_001014794, exon 11 of 13)	exon (NM_001014794, exon 11 of 13)	2216	NM_006284	6881		NM_006284	ENSG00000166337	TAF10	TAF2A|TAF2H|TAFII30	TATA-box binding protein associated factor 10	protein-coding
233355	chr9	137457501	137457700	+	0	NA	exon (NM_001178064, exon 3 of 15)	exon (NM_001178064, exon 3 of 15)	1734	NM_001130971	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228555	chr9	101561101	101561300	+	0	NA	exon (NM_019592, exon 18 of 20)	exon (NM_019592, exon 18 of 20)	27347	NM_019592	56254		NM_019592	ENSG00000155827	RNF20	BRE1|BRE1A|hBRE1	ring finger protein 20	protein-coding
61664	chr13	73948971	73949700	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	184594	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
172911	chr4	3495501	3496130	+	0	NA	intron (NM_001301071, intron 7 of 9)	intron (NM_001301071, intron 7 of 9)	11271	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
76824	chr15	77163371	77164090	+	0	NA	intron (NM_024776, intron 5 of 7)	intron (NM_024776, intron 5 of 7)	61674	NR_026813	81698		NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	ncRNA
48328	chr12	9038951	9039800	+	0	NA	Intergenic	Intergenic	25695	NR_034140	253128		NM_182550	ENSG00000214851	LINC00612	C12orf33	long intergenic non-protein coding RNA 612	ncRNA
145252	chr20	39004351	39004730	+	0	NA	intron (NM_001190809, intron 10 of 20)	intron (NM_001190809, intron 10 of 20)	42196	NR_033905	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
194426	chr6	33112151	33113150	+	0	NA	intron (NR_001435, intron 1 of 4)	intron (NR_001435, intron 1 of 4)	134	NR_001435	3116		NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo
46709	chr11	128839971	128840730	+	0	NA	intron (NM_153764, intron 1 of 1)	intron (NM_153764, intron 1 of 1)	2119	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
26686	chr10	22629421	22631170	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	83813	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
144008	chr20	33299071	33299450	+	0	NA	intron (NM_033197, intron 7 of 15)	intron (NM_033197, intron 7 of 15)	16046	NM_033197	92747		NM_033197	ENSG00000125999	BPIFB1	C20orf114|LPLUNC1	BPI fold containing family B member 1	protein-coding
41032	chr11	65446421	65447600	+	0	NA	Intergenic	Intergenic	2552	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
148485	chr20	64055351	64055650	+	0	NA	Intergenic	Intergenic	-1472	NM_198723	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
121853	chr19	48244201	48245100	+	0	NA	intron (NM_001351789, intron 2 of 11)	intron (NM_001351789, intron 2 of 11)	-3587	NR_033679	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
141688	chr2	241812051	241812150	+	0	NA	intron (NM_080741, intron 1 of 3).2	intron (NM_080741, intron 1 of 3).2	704	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
12561	chr1	108699271	108699430	+	0	NA	exon (NM_001349768, exon 7 of 7)	exon (NM_001349768, exon 7 of 7)	7040	NM_001349759	55119		NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
137886	chr2	200848621	200849080	+	0	NA	Intergenic	Intergenic	15711	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
180483	chr5	13478951	13479050	+	0	NA	Intergenic	Intergenic	-446114	NR_147005	105374658		NR_147005		LINC02220	-	long intergenic non-protein coding RNA 2220	ncRNA
214366	chr7	149625501	149626480	+	0	NA	Intergenic	Intergenic	-1200	NR_027789	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
113447	chr19	9833051	9833550	+	0	NA	Intergenic	AluJo|SINE|Alu	-1907	NR_038422	5300		NM_006221	ENSG00000127445	PIN1	DOD|UBL5	peptidylprolyl cis/trans isomerase, NIMA-interacting 1	protein-coding
234131	chrX	9941271	9941530	+	0	NA	intron (NM_001320664, intron 4 of 5)	intron (NM_001320664, intron 4 of 5)	-25958	NM_001195081	100288814		NM_001195081	ENSG00000234469	CLDN34	-	claudin 34	protein-coding
13277	chr1	112863871	112864100	+	0	NA	Intergenic	MER21A|LTR|ERVL	-13342	NR_103746	100996702		NR_103746	ENSG00000215866	LINC01356	LIMp27	long intergenic non-protein coding RNA 1356	ncRNA
217319	chr8	27412621	27412880	+	0	NA	intron (NM_173174, intron 7 of 35)	intron (NM_173174, intron 7 of 35)	-20620	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
111765	chr19	4390221	4391030	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	9922	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
141415	chr2	240976501	240977500	+	0	NA	intron (NM_001351305, intron 27 of 31)	intron (NM_001351305, intron 27 of 31)	-9549	NR_033841	200772		NR_033841	ENSG00000233392	UICLM	CROCC2-AS1	up-regulated in colorectal cancer liver metastasis	ncRNA
136118	chr2	173943701	173944230	+	0	NA	intron (NM_001172712, intron 4 of 6)	Tigger3a|DNA|TcMar-Tigger	19915	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
148618	chr21	5536571	5537000	+	0	NA	Intergenic	Intergenic	-16852	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
198048	chr6	90192571	90193080	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	104018	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
125725	chr2	20646401	20646800	+	0	NA	intron (NM_022460, intron 1 of 6)	intron (NM_022460, intron 1 of 6)	4498	NM_022460	64342		NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
203178	chr6	167119371	167120580	+	0	NA	intron (NM_004367, intron 1 of 2)	intron (NM_004367, intron 1 of 2)	-2778	NM_031409	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
87204	chr16	69440221	69440900	+	0	NA	intron (NM_030579, intron 1 of 4)	L1ME3|LINE|L1	15941	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
196724	chr6	45164371	45164930	+	0	NA	intron (NM_001350329, intron 2 of 10)	Charlie16a|DNA|hAT-Charlie	33120	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
230139	chr9	127734001	127736200	+	0	NA	intron (NM_001134430, intron 1 of 3)	CpG	194	NM_001252018	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
100137	chr17	58486371	58486900	+	0	NA	intron (NM_001080439, intron 1 of 5)	intron (NM_001080439, intron 1 of 5)	1773	NM_001080439	124535		NM_001080439	ENSG00000176160	HSF5	HSF 5|HSTF 5	heat shock transcription factor 5	protein-coding
118309	chr19	35468621	35469080	+	0	NA	Intergenic	Intergenic	20593	NM_001370087	2867		NM_005306	ENSG00000126262	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
201198	chr6	143427151	143427580	+	0	NA	3' UTR (NM_182503, exon 6 of 6)	3' UTR (NM_182503, exon 6 of 6)	15312	NM_001286259	134637		NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase tRNA specific 2	protein-coding
72535	chr15	34327751	34328450	+	0	NA	intron (NM_133647, intron 1 of 24)	intron (NM_133647, intron 1 of 24)	8744	NM_133647	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
190362	chr5	179732101	179733530	+	0	NA	promoter-TSS (NM_014757)	promoter-TSS (NM_014757)	-7	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
71503	chr14	106021751	106021850	+	0	NA	Intergenic	Intergenic	-49531	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
35335	chr11	1097801	1098000	+	0	NA	exon (NM_002457, exon 32 of 61)	exon (NM_002457, exon 32 of 61)	23025	NM_002457	4583		NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
226073	chr9	62375601	62376900	+	0	NA	promoter-TSS (NR_003674)	promoter-TSS (NR_003674)	-6	NR_047527	387628		NM_174950	ENSG00000291011	FGF7P6	KGFLP1	fibroblast growth factor 7 pseudogene 6	pseudo
188975	chr5	163504201	163504900	+	0	NA	intron (NM_182796, intron 1 of 6)	intron (NM_182796, intron 1 of 6)	-1069	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
81938	chr16	11791021	11792000	+	0	NA	intron (NM_014153, intron 1 of 22)	intron (NM_014153, intron 1 of 22)	5748	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
50839	chr12	49114271	49114630	+	0	NA	Intergenic	AluJr4|SINE|Alu	-3550	NM_001300751	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
215542	chr7	158788571	158788730	+	0	NA	intron (NM_020728, intron 4 of 21)	intron (NM_020728, intron 4 of 21)	40859	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
166179	chr3	111679401	111679600	+	0	NA	intron (NM_153268, intron 1 of 3)	L2c|LINE|L2	-2067	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
163117	chr3	50124971	50125130	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-24062	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
231806	chr9	132407671	132407830	+	0	NA	promoter-TSS (NM_001205296)	promoter-TSS (NM_001205296)	-899	NM_001205296	7270		NM_007344	ENSG00000125482	TTF1	TTF-1|TTF-I	transcription termination factor 1	protein-coding
73059	chr15	40901921	40903180	+	0	NA	intron (NM_020857, intron 4 of 4)	intron (NM_020857, intron 4 of 4)	-4259	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
140973	chr2	237955671	237956730	+	0	NA	Intergenic	CpG	-10745	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
13757	chr1	117003071	117003650	+	0	NA	intron (NM_001256106, intron 1 of 9)	intron (NM_001256106, intron 1 of 9)	1610	NM_004258	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
200705	chr6	137414951	137415900	+	0	NA	Intergenic	Intergenic	78969	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
58870	chr13	16252851	16253150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1942297	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
233967	chrX	2689651	2689750	+	0	NA	Intergenic	AluSx|SINE|Alu	-1595	NM_001321369	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
223084	chr8	143410751	143411650	+	0	NA	Intergenic	Intergenic	-6479	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
24785	chr1	248890671	248891030	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-15385	NM_170725	267002		NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
103969	chr17	79987851	79988900	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	-37522	NM_001271845	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
210422	chr7	100080171	100080330	+	0	NA	intron (NM_001371211, intron 1 of 5)	intron (NM_001371211, intron 1 of 5)	1473	NM_001371216	7551		NM_017715	ENSG00000166526	ZNF3	A8-51|HF.12|KOX25|PP838|Zfp113	zinc finger protein 3	protein-coding
81289	chr16	4675971	4677250	+	0	NA	intron (NR_102267, intron 10 of 14)	intron (NR_102267, intron 10 of 14)	5292	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
85281	chr16	48599101	48599300	+	0	NA	intron (NM_153029, intron 1 of 6)	MER21-int|LTR|ERVL	10980	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
149137	chr21	17783271	17784500	+	0	NA	intron (NR_038870, intron 2 of 2)	intron (NR_038870, intron 2 of 2)	8624	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
2944	chr1	11895171	11895980	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-12579	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
86412	chr16	66830401	66831680	+	0	NA	promoter-TSS (NM_001018160)	promoter-TSS (NM_001018160)	-64	NM_001018160	8883		NM_003905	ENSG00000159593	NAE1	A-116A10.1|APPBP1|HPP1|NEDFIH|ula-1	NEDD8 activating enzyme E1 subunit 1	protein-coding
45584	chr11	118883471	118884030	+	0	NA	promoter-TSS (NM_001716)	promoter-TSS (NM_001716)	-142	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
184594	chr5	103111151	103112050	+	0	NA	intron (NM_017676, intron 1 of 7)	intron (NM_017676, intron 1 of 7)	8538	NM_001317954	54826		NM_017676	ENSG00000145723	GIN1	GIN-1|TGIN1|ZH2C2	gypsy retrotransposon integrase 1	protein-coding
173036	chr4	4865151	4865450	+	0	NA	Intergenic	Intergenic	5635	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
25627	chr10	8084921	8085180	+	0	NA	Intergenic	Intergenic	30362	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
84736	chr16	30941821	30942800	+	0	NA	intron (NM_001382781, intron 8 of 10)	intron (NM_001382781, intron 8 of 10)	-6758	NM_152288	93129		NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
146798	chr20	50938351	50938850	+	0	NA	intron (NM_001317036, intron 6 of 7)	AluY|SINE|Alu	-7163	NM_181442	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
38713	chr11	46674501	46675530	+	0	NA	TTS (NM_001346311)	TTS (NM_001346311)	25604	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
123287	chr19	53548771	53548930	+	0	NA	intron (NM_001317113, intron 2 of 4)	AluSx1|SINE|Alu	-5649	NM_001253801	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
156468	chr22	41257521	41257780	+	0	NA	intron (NM_001278651, intron 8 of 16)	L3|LINE|CR1	-4600	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
193180	chr6	29723021	29723700	+	0	NA	promoter-TSS (NM_001098478).6	promoter-TSS (NM_001098478).6	20	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
130408	chr2	85333871	85334730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6311	NM_001368095	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
28954	chr10	63230021	63230280	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSx|SINE|Alu	39073	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
37802	chr11	32829371	32830150	+	0	NA	promoter-TSS (NM_024081)	promoter-TSS (NM_024081)	-167	NM_024081	79056		NM_024081	ENSG00000135378	PRRG4	PRGP4|TMG4	proline rich and Gla domain 4	protein-coding
213250	chr7	134334171	134334330	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-17320	NM_032826	84912		NM_032826	ENSG00000205060	SLC35B4	YEA|YEA4	solute carrier family 35 member B4	protein-coding
195820	chr6	41247421	41248480	+	0	NA	Intergenic	Intergenic	-1427	NR_002794	221438		NR_002794		TREML5P	TLT5|TREML2P|TREML2P1	triggering receptor expressed on myeloid cells like 5, pseudogene	pseudo
203062	chr6	166252851	166253800	+	0	NA	intron (NR_125862, intron 2 of 4)	intron (NR_125862, intron 2 of 4)	16356	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
202631	chr6	158751901	158752100	+	0	NA	exon (NM_001242384, exon 14 of 19)	exon (NM_001242384, exon 14 of 19)	12753	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
228632	chr9	105858871	105859230	+	0	NA	Intergenic	Intergenic	164509	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
109973	chr19	1396451	1397500	+	0	NA	TTS (NM_138924)	TTS (NM_138924)	4567	NM_138924	2593		NM_000156	ENSG00000130005	GAMT	CCDS2|HEL-S-20|PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
227424	chr9	89740751	89741780	+	0	NA	Intergenic	AluSc8|SINE|Alu	101482	NR_024280	100129066		NR_024280	ENSG00000237372	LINC03062	-	long intergenic non-protein coding RNA 3062	ncRNA
65874	chr14	55089201	55090030	+	0	NA	Intergenic	Intergenic	37968	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
95530	chr17	36590101	36590700	+	0	NA	TTS (NM_024835)	TTS (NM_024835)	-1479	NM_024308	79154		NM_024308	ENSG00000278535	DHRS11	ARPG836|SDR24C1|spDHRS11	dehydrogenase/reductase 11	protein-coding
31910	chr10	100479871	100480230	+	0	NA	intron (NM_003393, intron 3 of 5)	intron (NM_003393, intron 3 of 5)	17041	NM_003393	7479		NM_003393	ENSG00000075290	WNT8B	-	Wnt family member 8B	protein-coding
10184	chr1	61544951	61545100	+	0	NA	Intergenic	L1PB1|LINE|L1	-109217	NR_073400	414927		NR_073400		MGC34796	-	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene	pseudo
6700	chr1	29177921	29178580	+	0	NA	intron (NM_005626, intron 1 of 5)	intron (NM_005626, intron 1 of 5)	3650	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
214730	chr7	151030421	151030880	+	0	NA	intron (NM_001282293, intron 1 of 14)	intron (NM_001282293, intron 1 of 14)	2200	NM_007188	11194		NM_007188	ENSG00000197150	ABCB8	EST328128|M-ABC1|MABC1|MITOSUR	ATP binding cassette subfamily B member 8	protein-coding
51143	chr12	50121201	50121800	+	0	NA	Intergenic	Intergenic	9264	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
101948	chr17	74532221	74532480	+	0	NA	promoter-TSS (NM_174892)	promoter-TSS (NM_174892)	-875	NM_174892	124599		NM_174892	ENSG00000178789	CD300LB	CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5	CD300 molecule like family member b	protein-coding
68854	chr14	91298771	91298930	+	0	NA	intron (NM_001080414, intron 21 of 29)	intron (NM_001080414, intron 21 of 29)	-44970	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
125892	chr2	24730651	24730950	+	0	NA	intron (NM_147233, intron 15 of 20)	AluSz|SINE|Alu	-62315	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
23343	chr1	228136601	228137500	+	0	NA	Intergenic	MER57A-int|LTR|ERV1	-3034	NM_001242839	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
48098	chr12	7588701	7589100	+	0	NA	Intergenic	HERVP71A-int|LTR|ERV1	77008	NM_001644	339		NM_001644	ENSG00000111701	APOBEC1	APO1|APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme catalytic subunit 1	protein-coding
107035	chr18	32105901	32106100	+	0	NA	intron (NM_198128, intron 1 of 4)	intron (NM_198128, intron 1 of 4)	13394	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
25974	chr10	11736921	11737400	+	0	NA	Intergenic	L1PA2|LINE|L1	-5222	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
146766	chr20	50872671	50872830	+	0	NA	intron (NM_198799, intron 4 of 4)	intron (NM_198799, intron 4 of 4)	37041	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
204552	chr7	5072001	5072780	+	0	NA	exon (NM_001204513, exon 5 of 6)	exon (NM_001204513, exon 5 of 6)	330	NR_015343	389458		NM_203393	ENSG00000273313	RBAKDN	-	RBAK downstream neighbor	ncRNA
7158	chr1	32239451	32239750	+	0	NA	intron (NR_026850, intron 2 of 6)	intron (NR_026850, intron 2 of 6)	2110	NR_026850	339483		NM_178546	ENSG00000291132	MTMR9LP	MTMR9L	myotubularin related protein 9 like, pseudogene	pseudo
64402	chr14	24169921	24170280	+	0	NA	Intergenic	AluSx|SINE|Alu	-1980	NM_005132	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
141293	chr2	240236701	240236900	+	0	NA	Intergenic	Intergenic	-96142	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
156496	chr22	41286101	41287600	+	0	NA	promoter-TSS (NM_002883)	promoter-TSS (NM_002883)	-663	NM_001278651	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
116416	chr19	18004301	18004500	+	0	NA	intron (NM_001025604, intron 1 of 7)	AluSp|SINE|Alu	3276	NM_001025604	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
104261	chr17	80763201	80763980	+	0	NA	intron (NM_020761, intron 6 of 33)	L1M5|LINE|L1	42042	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
238760	chrX	154349321	154349980	+	0	NA	exon (NM_001456, exon 45 of 47)	exon (NM_001456, exon 45 of 47)	24984	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
153325	chr22	24274721	24275200	+	0	NA	intron (NM_001254732, intron 1 of 14)	intron (NM_001254732, intron 1 of 14)	4129	NM_001254732	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
238491	chrX	153554521	153555080	+	0	NA	intron (NM_001001344, intron 11 of 19)	intron (NM_001001344, intron 11 of 19)	18678	NM_021949	492		NM_021949	ENSG00000067842	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase plasma membrane Ca2+ transporting 3	protein-coding
144464	chr20	35598671	35599800	+	0	NA	intron (NR_119376, intron 18 of 42)	intron (NR_119376, intron 18 of 42)	8327	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
162556	chr3	48649121	48649580	+	0	NA	intron (NM_001407, intron 16 of 34)	intron (NM_001407, intron 16 of 34)	-5070	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
154794	chr22	36829671	36829830	+	0	NA	Intergenic	MIRb|SINE|MIR	-10251	NM_002854	5816		NM_002854	ENSG00000100362	PVALB	D22S749	parvalbumin	protein-coding
114714	chr19	13160951	13161330	+	0	NA	Intergenic	AluSx1|SINE|Alu	10729	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
148992	chr21	14253821	14254150	+	0	NA	Intergenic	LTR85a|LTR|Gypsy?	-19814	NR_003087	150000		NM_138726	ENSG00000291052	ABCC13	ABCC13P|C21orf73|PRED6	ATP binding cassette subfamily C member 13 (pseudogene)	pseudo
90559	chr17	1508651	1509080	+	0	NA	intron (NM_016532, intron 5 of 11)	CpG	7747	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
39319	chr11	59063921	59064180	+	0	NA	Intergenic	Intergenic	-5598	NR_033853	283194		NR_033853	ENSG00000255240	LOC283194	-	uncharacterized LOC283194	ncRNA
49387	chr12	22426601	22426800	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-91986	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
3854	chr1	16947621	16947950	+	0	NA	intron (NM_014675, intron 17 of 36)	intron (NM_014675, intron 17 of 36)	25854	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
211209	chr7	102623971	102624830	+	0	NA	Intergenic	L2c|LINE|L2	-7642	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
183412	chr5	78269171	78269630	+	0	NA	intron (NM_003664, intron 1 of 26)	intron (NM_003664, intron 1 of 26)	25298	NM_003664	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
66325	chr14	61423421	61424100	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	102317	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
201166	chr6	142941671	142941830	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	3426	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
232135	chr9	134024021	134024280	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1326	NR_149319	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
108519	chr18	74310201	74310650	+	0	NA	Intergenic	L2c|LINE|L2	-5414	NM_001174123	644041		NM_001174123	ENSG00000206043	C18orf63	DKFZP781G0119	chromosome 18 open reading frame 63	protein-coding
83523	chr16	27461171	27461680	+	0	NA	exon (NM_001286242, exon 37 of 37)	exon (NM_001286242, exon 37 of 37)	-8032	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
223317	chr8	143816871	143817030	+	0	NA	exon (NM_014281, exon 10 of 11)	exon (NM_014281, exon 10 of 11)	-1177	NM_015356	23513		NM_015356	ENSG00000180900	SCRIB	CRIB1|SCRB1|SCRIB1|Vartul|oSCRIB	scribble planar cell polarity protein	protein-coding
238517	chrX	153685901	153686180	+	0	NA	intron (NM_001366975, intron 2 of 12)	intron (NM_001366975, intron 2 of 12)	1731	NM_001366975	139728		NM_198452	ENSG00000130822	PNCK	BSTK3|CaMK1b	pregnancy up-regulated nonubiquitous CaM kinase	protein-coding
101660	chr17	68289801	68290700	+	0	NA	intron (NM_001174166, intron 1 of 6)	intron (NM_001174166, intron 1 of 6)	877	NM_001174166	9120		NM_004694	ENSG00000108932	SLC16A6	MCT6|MCT7	solute carrier family 16 member 6	protein-coding
179123	chr4	168921821	168922080	+	0	NA	intron (NM_001166108, intron 18 of 21)	intron (NM_001166108, intron 18 of 21)	88305	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
62280	chr13	98825871	98826030	+	0	NA	intron (NM_001366684, intron 44 of 53)	intron (NM_001366684, intron 44 of 53)	-6134	NR_046663	100874096		NR_046663	ENSG00000229918	DOCK9-AS1	-	DOCK9 antisense RNA 1	ncRNA
226379	chr9	70300321	70300780	+	0	NA	intron (NM_015110, intron 10 of 24)	intron (NM_015110, intron 10 of 24)	41572	NM_015110	23137		NM_015110	ENSG00000198887	SMC5	ATELS2|SMC5L1	structural maintenance of chromosomes 5	protein-coding
127449	chr2	42191321	42191580	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-21219	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
115088	chr19	14228001	14228200	+	0	NA	Intergenic	Intergenic	-21931	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
67276	chr14	69193551	69194050	+	0	NA	intron (NM_001193363, intron 1 of 8)	MER20|DNA|hAT-Charlie	2034	NR_034165	55218		NM_018199	ENSG00000081177	EXD2	C14orf114|EXDL2	exonuclease 3'-5' domain containing 2	protein-coding
6319	chr1	27650751	27651050	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	11822	NR_151722	111216282		NR_151722	ENSG00000233975	LINC02574	HEAL	long intergenic non-protein coding RNA 2574	ncRNA
55850	chr12	109110271	109110430	+	0	NA	3' UTR (NM_003362, exon 6 of 6)	3' UTR (NM_003362, exon 6 of 6)	-6237	NM_001093	32		NM_001093	ENSG00000076555	ACACB	ACACbeta|ACC-beta|ACC2|ACCB|ACCbeta|HACC275	acetyl-CoA carboxylase beta	protein-coding
70636	chr14	102901101	102902100	+	0	NA	intron (NM_001385143, intron 9 of 10)	intron (NM_001385143, intron 9 of 10)	-21063	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
118003	chr19	34042001	34042200	+	0	NA	Intergenic	Intergenic	-130404	NR_169265	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
66473	chr14	61565571	61565730	+	0	NA	intron (NR_110417, intron 1 of 3)	AluSz6|SINE|Alu	4544	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
236642	chrX	74931271	74931430	+	0	NA	Intergenic	Intergenic	-5898	NM_001008537	340533		NM_001008537	ENSG00000050030	NEXMIF	KIAA2022|KIDLIA|MRX98|XLID98|XPN	neurite extension and migration factor	protein-coding
47429	chr12	3152951	3153130	+	0	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	75661	NM_006675	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
209372	chr7	76298701	76299600	+	0	NA	Intergenic	AluSz|SINE|Alu	-3523	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
156837	chr22	41950701	41951400	+	0	NA	Intergenic	Intergenic	-1137	NR_024355								
89644	chr16	89337871	89338480	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	17723	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
101589	chr17	68085421	68086400	+	0	NA	Intergenic	Intergenic	-15645	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
174915	chr4	49107601	49107850	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	121083	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
231587	chr9	131532521	131533430	+	0	NA	Intergenic	Intergenic	-1700	NR_134667	83549		NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
59996	chr13	32423351	32424800	+	0	NA	TTS (NM_001353637)	TTS (NM_001353637)	4055	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
178055	chr4	139857051	139857350	+	0	NA	intron (NM_018717, intron 2 of 4)	intron (NM_018717, intron 2 of 4)	191381	NM_001204368	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
160628	chr3	31538321	31538580	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	5525	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
43407	chr11	77154371	77154530	+	0	NA	intron (NM_001369365, intron 5 of 49)	intron (NM_001369365, intron 5 of 49)	26204	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
202709	chr6	158823551	158824030	+	0	NA	Intergenic	AluJb|SINE|Alu	-4422	NM_001111077	7430		NM_003379	ENSG00000092820	EZR	CVIL|CVL|HEL-S-105|VIL2	ezrin	protein-coding
129647	chr2	70161801	70162000	+	0	NA	intron (NR_145967, intron 7 of 8)	AluJb|SINE|Alu	28811	NR_145972	54980		NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
132707	chr2	109029751	109030050	+	0	NA	Intergenic	Intergenic	-40680	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
114613	chr19	12968971	12969130	+	0	NA	promoter-TSS (NM_152654)	promoter-TSS (NM_152654)	-568	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
77287	chr15	82284351	82284800	+	0	NA	3' UTR (NM_001008226, exon 3 of 3)	3' UTR (NM_001008226, exon 3 of 3)	-8708	NR_045529	390660		NR_045529	ENSG00000274376	ADAMTS7P1	ADAMTS7P2	ADAMTS7 pseudogene 1	pseudo
154693	chr22	36384341	36386100	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	2747	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
171132	chr3	195541371	195541530	+	0	NA	intron (NM_006241, intron 1 of 5)	(TTTCT)n|Simple_repeat|Simple_repeat	1875	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
67083	chr14	68210471	68211380	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	387333	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
5251	chr1	25020851	25021400	+	0	NA	Intergenic	Intergenic	-2378	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
101355	chr17	67157971	67158580	+	0	NA	intron (NM_001330447, intron 17 of 32)	intron (NM_001330447, intron 17 of 32)	-86501	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
198067	chr6	90230601	90230800	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	66143	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
149028	chr21	14589801	14590300	+	0	NA	intron (NR_046512, intron 2 of 4)	intron (NR_046512, intron 2 of 4)	-6648	NM_001256370	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
203236	chr6	168904821	168905080	+	0	NA	Intergenic	Intergenic	59432	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
112151	chr19	5621921	5623700	+	0	NA	promoter-TSS (NM_001201340)	promoter-TSS (NM_001201340)	-34	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
122104	chr19	48761871	48762630	+	0	NA	Intergenic	Intergenic	6726	NM_019113	26291		NM_019113	ENSG00000105550	FGF21	-	fibroblast growth factor 21	protein-coding
199406	chr6	116561351	116562130	+	0	NA	TTS (NM_001366078)	TTS (NM_001366078)	8609	NM_001366078	221301		NM_153036	ENSG00000164451	CALHM4	C6orf78|FAM26D	calcium homeostasis modulator family member 4	protein-coding
180158	chr5	1384601	1384800	+	0	NA	Intergenic	MIR|SINE|MIR	-4627	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
146562	chr20	50012401	50012800	+	0	NA	Intergenic	L2a|LINE|L2	29029	NR_051976	100887755		NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
21327	chr1	204525601	204525800	+	0	NA	intron (NM_001204172, intron 2 of 2)	AluJr|SINE|Alu	9294	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
204756	chr7	5594301	5594900	+	0	NA	intron (NM_003088, intron 1 of 4)	CpG	1784	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
113468	chr19	9932801	9933280	+	0	NA	intron (NM_058164, intron 1 of 5)	L2a|LINE|L2	3475	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
143718	chr20	32277221	32278930	+	0	NA	intron (NM_004798, intron 1 of 8)	MIRc|SINE|MIR	424	NM_004798	9371		NM_004798	ENSG00000101350	KIF3B	FLA8|HH0048|KLP-11|OTSC12|RP89	kinesin family member 3B	protein-coding
73985	chr15	52016601	52017000	+	0	NA	intron (NR_156732, intron 1 of 1)	AluSc5|SINE|Alu	2295	NR_156732	112543478		NR_156732	ENSG00000259438	MAPK6-DT	lncMAPK6	MAPK6 divergent transcript	ncRNA
227209	chr9	88385501	88385700	+	0	NA	Intergenic	AluSq|SINE|Alu	-2844	NM_006717	10927		NM_006717	ENSG00000106723	SPIN1	SPIN|TDRD24	spindlin 1	protein-coding
206454	chr7	32888451	32888830	+	0	NA	intron (NM_015483, intron 1 of 3)	Alu|SINE|Alu	3120	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
162752	chr3	49056801	49057650	+	0	NA	exon (NM_001320583, exon 3 of 10)	exon (NM_001320583, exon 3 of 10)	-27827	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
167635	chr3	129599801	129600550	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	6501	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
2413	chr1	9584151	9584450	+	0	NA	3' UTR (NM_032315, exon 7 of 7)	3' UTR (NM_032315, exon 7 of 7)	-4611	NM_001010866	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
173262	chr4	7045251	7045350	+	0	NA	intron (NR_033828, intron 1 of 3)	L2|LINE|L2	931	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
170134	chr3	183366551	183366850	+	0	NA	intron (NM_015078, intron 3 of 29)	HAL1ME|LINE|L1	61569	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
59581	chr13	27452101	27452300	+	0	NA	Intergenic	Intergenic	-1598	NM_001166263	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
8724	chr1	42657771	42659080	+	0	NA	promoter-TSS (NM_001330510)	promoter-TSS (NM_001330510)	2	NM_001330510	10465		NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H	protein-coding
14701	chr1	145924771	145924950	+	0	NA	non-coding (NR_002328, exon 3 of 3)	non-coding (NR_002328, exon 3 of 3)	-1971	NR_147182	105371260		NR_147182	ENSG00000234222	LIX1L-AS1	-	LIX1L antisense RNA 1	ncRNA
169738	chr3	172478171	172478330	+	0	NA	Intergenic	Intergenic	-29794	NM_198407	2693		NM_004122	ENSG00000121853	GHSR	GHDP|GHS-R1a|GHSR-1a	growth hormone secretagogue receptor	protein-coding
210907	chr7	101192451	101193300	+	0	NA	Intergenic	AluY|SINE|Alu	8161	NM_001287147	346606		NM_178176	ENSG00000106384	MOGAT3	DC7|DGAT2L2|MGAT3	monoacylglycerol O-acyltransferase 3	protein-coding
146475	chr20	49776021	49776680	+	0	NA	Intergenic	L2c|LINE|L2	-36363	NM_001260491	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
131178	chr2	94273071	94273630	+	0	NA	Intergenic	CpG	-64931	NR_146107	728034		NR_146105		BMS1P23	-	BMS1 pseudogene 23	pseudo
164509	chr3	62445351	62445650	+	0	NA	intron (NM_183393, intron 24 of 26)	intron (NM_183393, intron 24 of 26)	-71950	NM_018008	55079		NM_018008	ENSG00000153266	FEZF2	FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312	FEZ family zinc finger 2	protein-coding
137550	chr2	197231821	197232680	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	34259	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
32603	chr10	103588071	103588780	+	0	NA	intron (NM_004210, intron 4 of 5)	(TGTG)n|Simple_repeat|Simple_repeat	-70983	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
100028	chr17	57993251	57993350	+	0	NA	Intergenic	AluY|SINE|Alu	-5046	NM_007146	7716		NM_007146	ENSG00000136451	VEZF1	CMD1OO|DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
19764	chr1	182069071	182069330	+	0	NA	Intergenic	Intergenic	-7488	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
53099	chr12	57758071	57758550	+	0	NA	intron (NM_138396, intron 3 of 3)	intron (NM_138396, intron 3 of 3)	3207	NM_138396	92979		NM_138396	ENSG00000139266	MARCHF9	MARCH-IX|MARCH9|RNF179	membrane associated ring-CH-type finger 9	protein-coding
81547	chr16	9111651	9111750	+	0	NA	intron (NM_014117, intron 3 of 3)	intron (NM_014117, intron 3 of 3)	20056	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
139143	chr2	219045901	219046200	+	0	NA	Intergenic	Intergenic	-4499	NM_001278295	255101		NM_152389	ENSG00000181378	CFAP65	CCDC108|SPGF40	cilia and flagella associated protein 65	protein-coding
220186	chr8	95221471	95221630	+	0	NA	Intergenic	LTR88c|LTR|Gypsy?	-5176	NR_046232	619344		NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
31635	chr10	97389921	97390280	+	0	NA	intron (NM_001284337, intron 3 of 30)	MIRb|SINE|MIR	11240	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
166197	chr3	111840951	111841050	+	0	NA	intron (NM_001134437, intron 1 of 17)	intron (NM_001134437, intron 1 of 17)	-18180	NM_145753	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
120680	chr19	45119821	45120280	+	0	NA	intron (NM_019121, intron 1 of 12)	AluY|SINE|Alu	26871	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
111449	chr19	3819701	3820450	+	0	NA	intron (NM_015174, intron 11 of 18)	intron (NM_015174, intron 11 of 18)	-18276	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
210657	chr7	100486171	100487800	+	0	NA	exon (NM_173564, exon 3 of 7)	exon (NM_173564, exon 3 of 7)	3058	NM_173564	222950		NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
155933	chr22	39660301	39660530	+	0	NA	exon (NM_021096, exon 15 of 37)	exon (NM_021096, exon 15 of 37)	89662	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
161060	chr3	38030571	38030730	+	0	NA	Intergenic	Intergenic	-1008	NM_006225	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
99413	chr17	50055401	50057330	+	0	NA	promoter-TSS (NR_038230)	promoter-TSS (NR_038230)	255	NM_002204	3675		NM_002204	ENSG00000005884	ITGA3	CD49C|FRP-2|GAP-B3|GAPB3|ILNEB|JEB7|MSK18|VCA-2|VL3A|VLA3a	integrin subunit alpha 3	protein-coding
20759	chr1	200995901	200996300	+	0	NA	intron (NM_017596, intron 15 of 33)	intron (NM_017596, intron 15 of 33)	27614	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
120569	chr19	44992221	44993280	+	0	NA	exon (NM_001294, exon 14 of 14)	exon (NM_001294, exon 14 of 14)	-8714	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
132882	chr2	111200971	111201330	+	0	NA	intron (NR_136162, intron 4 of 4)	intron (NR_136162, intron 4 of 4)	80236	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
1482	chr1	2747451	2747750	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	53268	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
44451	chr11	104915901	104916100	+	0	NA	intron (NR_034078, intron 1 of 4)	intron (NR_034078, intron 1 of 4)	2175	NR_034079	643733		NR_034078	ENSG00000291173	CASP4LP	CASP17P	caspase 4 like, pseudogene	pseudo
75865	chr15	69680771	69681130	+	0	NA	intron (NR_126438, intron 3 of 3)	intron (NR_126438, intron 3 of 3)	88750	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
76978	chr15	78242021	78242350	+	0	NA	Intergenic	Intergenic	-7620	NM_001199377	23205		NM_015162	ENSG00000103740	ACSBG1	BG|BG1|BGM|GR-LACS|LPD	acyl-CoA synthetase bubblegum family member 1	protein-coding
226397	chr9	70407451	70408050	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	6907	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
188641	chr5	157228571	157229030	+	0	NA	intron (NM_005546, intron 7 of 16)	AluJb|SINE|Alu	-37323	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
230248	chr9	127887651	127887950	+	0	NA	intron (NM_001287003, intron 3 of 4)	intron (NM_001287003, intron 3 of 4)	-8179	NM_001318121	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
30132	chr10	74055051	74055350	+	0	NA	intron (NM_014000, intron 2 of 21)	AluSz|SINE|Alu	57084	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
160386	chr3	27966451	27966830	+	0	NA	Intergenic	Intergenic	-132504	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
215746	chr8	1858551	1858850	+	0	NA	intron (NM_001308152, intron 3 of 27)	intron (NM_001308152, intron 3 of 27)	34774	NM_001308153	9639		NM_014629	ENSG00000104728	ARHGEF10	GEF10|SNCV	Rho guanine nucleotide exchange factor 10	protein-coding
34380	chr10	132310201	132311380	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	-2840	NM_173575	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
77549	chr15	84755701	84756400	+	0	NA	intron (NM_014630, intron 1 of 10)	intron (NM_014630, intron 1 of 10)	7458	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
88490	chr16	85126871	85127230	+	0	NA	Intergenic	Intergenic	-10100	NR_033984	400548		NR_033984	ENSG00000278214	LINC02139	-	long intergenic non-protein coding RNA 2139	ncRNA
79956	chr16	1768951	1770150	+	0	NA	TTS (NM_002513)	TTS (NM_002513)	2159	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
205482	chr7	17640951	17641050	+	0	NA	Intergenic	Intergenic	-82091	NR_110013	101927630		NR_110013	ENSG00000236039	LINC02889	-	long intergenic non-protein coding RNA 2889	ncRNA
113837	chr19	10628851	10629150	+	0	NA	intron (NM_001363611, intron 4 of 22)	AluSx3|SINE|Alu	3447	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
75890	chr15	69758501	69759550	+	0	NA	Intergenic	Intergenic	-76209	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
139392	chr2	222299051	222299350	+	0	NA	promoter-TSS (NM_181461)	promoter-TSS (NM_181461)	-202	NM_000438	5077		NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|PAX-3|WS1|WS3	paired box 3	protein-coding
192311	chr6	21596151	21596350	+	0	NA	3' UTR (NM_003107, exon 1 of 1)	3' UTR (NM_003107, exon 1 of 1)	2499	NM_003107	6659		NM_003107	ENSG00000124766	SOX4	CSS10|EVI16	SRY-box transcription factor 4	protein-coding
208255	chr7	65621601	65621830	+	0	NA	Intergenic	Intergenic	-26139	NR_027392	644619		NR_027392	ENSG00000273024	INTS4P2	INTS4L2	integrator complex subunit 4 pseudogene 2	pseudo
32069	chr10	101089651	101090150	+	0	NA	non-coding (NR_130722, exon 3 of 3)	non-coding (NR_130722, exon 3 of 3)	23517	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
122565	chr19	49667001	49667230	+	0	NA	exon (NM_001040668, exon 3 of 7)	exon (NM_001040668, exon 3 of 7)	1182	NM_138639	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
88465	chr16	85028501	85029100	+	0	NA	intron (NM_001286566, intron 1 of 11)	intron (NM_001286566, intron 1 of 11)	1049	NM_001297766	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
166222	chr3	112092501	112092700	+	0	NA	intron (NM_024616, intron 1 of 5)	intron (NM_024616, intron 1 of 5)	6211	NM_024616	79669		NM_024616	ENSG00000114529	C3orf52	HYPT15|TTMP	chromosome 3 open reading frame 52	protein-coding
9331	chr1	46606521	46606780	+	0	NA	Intergenic	MIR3|SINE|MIR	-2382	NM_001377373	8569		NM_003684	ENSG00000079277	MKNK1	MNK1	MAPK interacting serine/threonine kinase 1	protein-coding
58025	chr12	124430151	124430850	+	0	NA	intron (NM_006312, intron 11 of 48)	intron (NM_006312, intron 11 of 48)	-93258	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
25730	chr10	9026151	9026780	+	0	NA	Intergenic	Intergenic	128476	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
92895	chr17	16443801	16444000	+	0	NA	exon (NM_207387, exon 3 of 3)	exon (NM_207387, exon 3 of 3)	2674	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
92401	chr17	8338221	8338630	+	0	NA	Intergenic	LTR45C|LTR|ERV1	-1415	NM_001319953	146852		NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
76741	chr15	76335021	76335580	+	0	NA	Intergenic	CpG	-1473	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
84532	chr16	30524621	30525450	+	0	NA	exon (NM_024671, exon 2 of 2)	exon (NM_024671, exon 2 of 2)	1531	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
3268	chr1	15152601	15153000	+	0	NA	promoter-TSS (NR_027136)	promoter-TSS (NR_027136)	234	NM_001136216	55092		NM_018022	ENSG00000171729	TMEM51	C1orf72	transmembrane protein 51	protein-coding
175508	chr4	74098921	74099580	+	0	NA	promoter-TSS (NM_002089)	promoter-TSS (NM_002089)	-55	NM_002089	2920		NM_002089	ENSG00000081041	CXCL2	CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2	C-X-C motif chemokine ligand 2	protein-coding
113496	chr19	10088151	10088780	+	0	NA	intron (NM_018381, intron 3 of 7)	AluY|SINE|Alu	2148	NM_001308277	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
153416	chr22	24953601	24954950	+	0	NA	Intergenic	Intergenic	-7580	NM_001001663	255349		NM_001001663	ENSG00000206069	LHFPL7	TMEM211|bA9F11.1	LHFPL tetraspan subfamily member 7	protein-coding
148274	chr20	63691671	63691830	+	0	NA	exon (NM_001283010, exon 27 of 34)	exon (NM_001283010, exon 27 of 34)	-4902	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
191364	chr6	7262601	7262800	+	0	NA	Intergenic	AluSx1|SINE|Alu	50499	NM_003144	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
116325	chr19	17827721	17827980	+	0	NA	intron (NM_000215, intron 23 of 23)	AluSp|SINE|Alu	-6331	NM_001265587	3640		NM_005543	ENSG00000248099	INSL3	RLF|RLNL|ley-I-L	insulin like 3	protein-coding
4821	chr1	23613021	23614530	+	0	NA	Intergenic	MIRb|SINE|MIR	-13559	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
178583	chr4	151276951	151277050	+	0	NA	promoter-TSS (NM_183375)	promoter-TSS (NM_183375)	-173	NM_183375	345062		NM_183375	ENSG00000189099	PRSS48	ESSPL	serine protease 48	protein-coding
92860	chr17	16378701	16378900	+	0	NA	Intergenic	Intergenic	-1993	NM_001281716	7314		NM_018955	ENSG00000170315	UBB	HEL-S-50	ubiquitin B	protein-coding
94585	chr17	29706361	29707630	+	0	NA	intron (NM_033389, intron 2 of 14)	AluYi6|SINE|Alu	54437	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
53127	chr12	57836451	57837480	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	9764	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
52743	chr12	56637951	56638850	+	0	NA	exon (NM_001686, exon 10 of 10)	exon (NM_001686, exon 10 of 10)	-2041	NM_013449	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
108471	chr18	70635221	70635480	+	0	NA	intron (NR_160904, intron 2 of 2)	intron (NR_160904, intron 2 of 2)	15604	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
122472	chr19	49537401	49537800	+	0	NA	intron (NM_020650, intron 4 of 6)	AluSx|SINE|Alu	9597	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
170616	chr3	187004901	187005100	+	0	NA	intron (NM_173216, intron 2 of 7)	intron (NM_173216, intron 2 of 7)	-16855	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
225464	chr9	35481421	35481680	+	0	NA	intron (NR_003581, intron 16 of 17)	(CCCTG)n|Simple_repeat|Simple_repeat	-8561	NR_052015	9853		NM_014806	ENSG00000198853	RUSC2	Iporin|MRT61	RUN and SH3 domain containing 2	protein-coding
39611	chr11	61385321	61386100	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-6650	NM_001330285	51259		NM_016499	ENSG00000187049	TMEM216	HSPC244	transmembrane protein 216	protein-coding
171513	chr3	196637901	196638300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1594	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
186492	chr5	138215671	138216030	+	0	NA	Intergenic	AluY|SINE|Alu	-2527	NM_004661	8697		NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
211424	chr7	105056551	105056850	+	0	NA	intron (NM_182931, intron 3 of 26)	intron (NM_182931, intron 3 of 26)	42495	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
57109	chr12	121091301	121091700	+	0	NA	Intergenic	L1MC2|LINE|L1	-41376	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
197860	chr6	89078171	89078330	+	0	NA	Intergenic	AluSx|SINE|Alu	-2501	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
33804	chr10	123154001	123155300	+	0	NA	intron (NM_004725, intron 1 of 7)	CpG	248	NM_004725	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
45543	chr11	118766801	118767000	+	0	NA	intron (NM_004397, intron 5 of 13)	intron (NM_004397, intron 5 of 13)	24048	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
136220	chr2	174585351	174585980	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	12139	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
129668	chr2	70283021	70283630	+	0	NA	intron (NM_001317166, intron 3 of 3)	intron (NM_001317166, intron 3 of 3)	9899	NM_001317167	6637		NM_003096	ENSG00000143977	SNRPG	SMG|Sm-G	small nuclear ribonucleoprotein polypeptide G	protein-coding
190530	chr5	180647771	180647930	+	0	NA	intron (NM_001354989, intron 1 of 29)	intron (NM_001354989, intron 1 of 29)	1750	NM_001354989	2324		NM_002020	ENSG00000037280	FLT4	CHTD7|FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3	fms related receptor tyrosine kinase 4	protein-coding
177661	chr4	121370801	121371000	+	0	NA	intron (NM_198179, intron 1 of 5)	intron (NM_198179, intron 1 of 5)	10118	NM_198179	84109		NM_198179	ENSG00000186867	QRFPR	AQ27|GPR103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
60000	chr13	32427801	32429300	+	0	NA	promoter-TSS (NM_001353628)	promoter-TSS (NM_001353628)	-420	NM_001353628	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
135641	chr2	168246361	168247200	+	0	NA	intron (NM_013233, intron 1 of 17)	CpG	815	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
213207	chr7	132777521	132777780	+	0	NA	Intergenic	L2a|LINE|L2	18680	NR_134332	100506937		NR_134332	ENSG00000225881	LOC100506937	-	uncharacterized LOC100506937	ncRNA
57307	chr12	121664811	121666000	+	0	NA	intron (NM_173855, intron 1 of 5)	AluYh3|SINE|Alu	4249	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
169390	chr3	160547401	160547830	+	0	NA	intron (NM_002268, intron 1 of 16)	L1MC1|LINE|L1	17956	NM_002268	3840		NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
174103	chr4	36174001	36174200	+	0	NA	intron (NR_146894, intron 9 of 32)	L2a|LINE|L2	69839	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
53329	chr12	64623551	64624050	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSx1|SINE|Alu	-1195	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
114155	chr19	11342951	11343250	+	0	NA	exon (NM_198536, exon 3 of 3)	exon (NM_198536, exon 3 of 3)	3168	NM_001321114	374882		NM_033408	ENSG00000105518	TMEM205	UNQ501	transmembrane protein 205	protein-coding
111476	chr19	3950851	3952350	+	0	NA	Intergenic	Intergenic	9912	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
8960	chr1	44408471	44409080	+	0	NA	intron (NM_001376488, intron 1 of 14)	intron (NM_001376488, intron 1 of 14)	1983	NM_001376488	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
65928	chr14	55336801	55337200	+	0	NA	intron (NM_152231, intron 1 of 1)	AluSx1|SINE|Alu	64846	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
71675	chr15	19844251	19844350	+	0	NA	Intergenic	Intergenic	-438444	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
99849	chr17	55431951	55432050	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-10165	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
17975	chr1	160456271	160456430	+	0	NA	Intergenic	LTR16B|LTR|ERVL	55786	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
162880	chr3	49377251	49378880	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluSq|SINE|Alu	-19465	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
51184	chr12	50251501	50251900	+	0	NA	intron (NM_001113546, intron 1 of 10)	intron (NM_001113546, intron 1 of 10)	-17488	NR_031625	100302220		NR_031625	ENSG00000221604	MIR1293	MIRN1293|hsa-mir-1293|mir-1293	microRNA 1293	ncRNA
71714	chr15	20345871	20346500	+	0	NA	Intergenic	Intergenic	63441	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
10143	chr1	59926171	59926930	+	0	NA	exon (NM_000775, exon 1 of 9)	exon (NM_000775, exon 1 of 9)	223	NM_000775	1573		NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding
200936	chr6	139160921	139161600	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	26180	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
40538	chr11	64307771	64307930	+	0	NA	intron (NM_004451, intron 2 of 6)	intron (NM_004451, intron 2 of 6)	1623	NM_001282450	2101		NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen related receptor alpha	protein-coding
64900	chr14	35396401	35397000	+	0	NA	Intergenic	LTR7Y|LTR|ERV1	8049	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
117853	chr19	32319001	32319230	+	0	NA	Intergenic	Intergenic	-26495	NM_014910	22847		NM_014910	ENSG00000168813	ZNF507	Zfp507	zinc finger protein 507	protein-coding
103587	chr17	78706221	78706530	+	0	NA	intron (NM_017456, intron 3 of 12)	L1ME2|LINE|L1	10657	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
233589	chrX	313601	314980	+	0	NA	intron (NM_012227, intron 4 of 9)	CpG-29365	4529	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
226891	chr9	78292801	78293730	+	0	NA	Intergenic	AluSx|SINE|Alu	-3860	NM_021154	29968		NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding
228389	chr9	99126251	99126550	+	0	NA	intron (NM_001130916, intron 1 of 7)	L2b|LINE|L2	21287	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
15831	chr1	151341921	151343000	+	0	NA	exon (NM_001379417, exon 11 of 11)	exon (NM_001379417, exon 11 of 11)	4396	NM_001379416	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
11839	chr1	92954571	92954930	+	0	NA	intron (NM_001006605, intron 1 of 4)	intron (NM_001006605, intron 1 of 4)	6712	NM_001006605	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
210878	chr7	101155571	101155930	+	0	NA	intron (NM_001283, intron 1 of 4)	intron (NM_001283, intron 1 of 4)	1274	NM_001283	1174		NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A	adaptor related protein complex 1 subunit sigma 1	protein-coding
195419	chr6	36889171	36889530	+	0	NA	intron (NM_152734, intron 1 of 7)	L2c|LINE|L2	3398	NM_152734	221477		NM_152734	ENSG00000198663	C6orf89	BRAP|PS1TP5TP1	chromosome 6 open reading frame 89	protein-coding
21097	chr1	203341051	203341750	+	0	NA	non-coding (NR_103757, exon 2 of 2)	non-coding (NR_103757, exon 2 of 2)	9722	NR_103757	2331		NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding
44110	chr11	96015851	96016650	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-92143	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
127765	chr2	44090501	44090900	+	0	NA	Intergenic	LTR33|LTR|ERVL	-78103	NM_177969	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
83202	chr16	23516651	23516950	+	0	NA	Intergenic	Intergenic	-6306	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
39040	chr11	47847651	47849050	+	0	NA	promoter-TSS (NR_134636)	promoter-TSS (NR_134636)	0	NR_134636	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
113004	chr19	7907071	7907750	+	0	NA	intron (NM_001297555, intron 2 of 11)	intron (NM_001297555, intron 2 of 11)	3533	NM_145185	5609		NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
122	chr1	495151	495250	+	0	NA	intron (NR_028325, intron 1 of 2)	MER1A|DNA|hAT-Charlie	245	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
123051	chr19	51327501	51328430	+	0	NA	intron (NM_001101372, intron 7 of 7)	intron (NM_001101372, intron 7 of 7)	14159	NM_001163922	147645		NM_001163922	ENSG00000186806	VSIG10L	-	V-set and immunoglobulin domain containing 10 like	protein-coding
113331	chr19	8606871	8607230	+	0	NA	intron (NM_030957, intron 2 of 25)	L2b|LINE|L2	3665	NM_030957	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
233660	chrX	1026251	1026630	+	0	NA	Intergenic	Intergenic	186209	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
40769	chr11	64862621	64863000	+	0	NA	intron (NM_001282444, intron 4 of 6)	AluJb|SINE|Alu	15799	NR_162101	113218486		NR_162101		MIR10392	-	microRNA 10392	ncRNA
38504	chr11	45881971	45882330	+	0	NA	3' UTR (NM_001127457, exon 12 of 12)	3' UTR (NM_001127457, exon 12 of 12)	-3501	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
69567	chr14	96817871	96818530	+	0	NA	intron (NM_003384, intron 1 of 12)	intron (NM_003384, intron 1 of 12)	20818	NM_003384	7443		NM_003384	ENSG00000100749	VRK1	HMNR10|PCH1|PCH1A	VRK serine/threonine kinase 1	protein-coding
170962	chr3	194482901	194483100	+	0	NA	intron (NR_164666, intron 2 of 32)	AluSx3|SINE|Alu	4002	NM_001367549	79572		NM_024524	ENSG00000133657	ATP13A3	AFURS1|PPH5	ATPase 13A3	protein-coding
192817	chr6	26955851	26957530	+	0	NA	promoter-TSS (NR_003504)	promoter-TSS (NR_003504)	-136	NR_003504	387036		NM_001033523	ENSG00000290474	GUSBP2	GUSBL1|GUSBP4|SMA3-L|SMAC3L|SMAC3L2|b55C20.1|bA239L20.1|bA239L20.5|bGLU-Lp	GUSB pseudogene 2	pseudo
177805	chr4	123418371	123418730	+	0	NA	Intergenic	Intergenic	19010	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
133166	chr2	112756321	112756600	+	0	NA	exon (NM_152515, exon 4 of 9)	exon (NM_152515, exon 4 of 9)	8149	NM_152515	150468		NM_152515	ENSG00000169607	CKAP2L	-	cytoskeleton associated protein 2 like	protein-coding
15138	chr1	148790271	148791030	+	0	NA	intron (NR_158171, intron 1 of 4).2	intron (NR_158171, intron 1 of 4).2	1319	NR_158171	100996716		NR_158171		SEC22B2P	CH17-189H20.1|SEC22B2	SEC22 homolog B2, pseudogene	pseudo
221319	chr8	123040751	123040850	+	0	NA	intron (NM_024295, intron 1 of 7)	L2a|LINE|L2	1502	NM_024295	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
194315	chr6	32832651	32832950	+	0	NA	exon (NM_001290043, exon 6 of 12).2	exon (NM_001290043, exon 6 of 12).2	5939	NM_001290043	6891		NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
231969	chr9	133161971	133162650	+	0	NA	intron (NM_021996, intron 2 of 6)	intron (NM_021996, intron 2 of 6)	1604	NM_001288572	26301		NM_021996	ENSG00000148288	GBGT1	A3GALNT|FS|UNQ2513	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)	protein-coding
101967	chr17	74733311	74733900	+	0	NA	intron (NM_175738, intron 2 of 8)	(GT)n|Simple_repeat|Simple_repeat	-2955	NM_001330471	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
223732	chr8	144476301	144477050	+	0	NA	promoter-TSS (NM_003923)	promoter-TSS (NM_003923)	-826	NM_003923	8928		NM_003923	ENSG00000160973	FOXH1	FAST-1|FAST1	forkhead box H1	protein-coding
57936	chr12	123631801	123632200	+	0	NA	intron (NM_001414, intron 2 of 8)	AluSx|SINE|Alu	1686	NM_001414	1967		NM_001414	ENSG00000111361	EIF2B1	EIF2B|EIF2BA|EIF2Balpha|VWM1	eukaryotic translation initiation factor 2B subunit alpha	protein-coding
65364	chr14	50528501	50528700	+	0	NA	intron (NM_198794, intron 2 of 31)	AluJr|SINE|Alu	3969	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
225008	chr9	33125651	33126280	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	17273	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
29404	chr10	70164171	70164830	+	0	NA	intron (NM_001142648, intron 1 of 7)	intron (NM_001142648, intron 1 of 7)	6014	NM_001142648	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
127839	chr2	45013001	45013400	+	0	NA	Intergenic	Intergenic	-3748	NM_016932	10736		NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
24461	chr1	243853101	243853500	+	0	NA	Intergenic	AluJo|SINE|Alu	-2221	NM_001370074	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
28230	chr10	45422301	45422930	+	0	NA	intron (NM_001256153, intron 4 of 13).2	intron (NM_001256153, intron 4 of 13).2	30506	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
186985	chr5	139704871	139705230	+	0	NA	Intergenic	Intergenic	29607	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
168189	chr3	141000071	141000730	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	-50947	NM_080862	92369		NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
228083	chr9	96410971	96411330	+	0	NA	intron (NM_153695, intron 1 of 4)	AluJb|SINE|Alu	7220	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
124561	chr2	468201	468700	+	0	NA	Intergenic	CpG	24205	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
67552	chr14	71266901	71267130	+	0	NA	Intergenic	Intergenic	-53461	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
86910	chr16	68071251	68071780	+	0	NA	intron (NM_001271763, intron 10 of 14)	intron (NM_001271763, intron 10 of 14)	-13855	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
37961	chr11	34647451	34647950	+	0	NA	intron (NR_165390, intron 3 of 8)	intron (NR_165390, intron 3 of 8)	5328	NM_001378046	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
132750	chr2	109637821	109638080	+	0	NA	Intergenic	AluSx1|SINE|Alu	23586	NM_023016	65124		NM_023016	ENSG00000198142	SOWAHC	ANKRD57|C2orf26	sosondowah ankyrin repeat domain family member C	protein-coding
224252	chr9	5920951	5921250	+	0	NA	exon (NM_001017969, exon 8 of 8)	exon (NM_001017969, exon 8 of 8)	30211	NM_005511	2315		NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
89683	chr16	89383951	89384200	+	0	NA	intron (NR_045839, intron 2 of 9)	AluSx1|SINE|Alu	-46843	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
156447	chr22	41242971	41243130	+	0	NA	Intergenic	AluSq|SINE|Alu	-2119	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
221013	chr8	116384301	116384750	+	0	NA	Intergenic	Intergenic	-59466	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
103806	chr17	79085271	79085650	+	0	NA	intron (NM_001042573, intron 12 of 13)	intron (NM_001042573, intron 12 of 13)	10636	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
889	chr1	1653801	1654000	+	0	NA	intron (NM_033490, intron 3 of 18)	AluSx|SINE|Alu	5104	NM_033487	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
20279	chr1	196148401	196148600	+	0	NA	Intergenic	Intergenic	-59785	NR_146895	105371673		NR_146895		LINC01724	-	long intergenic non-protein coding RNA 1724	ncRNA
105145	chr17	82246471	82246650	+	0	NA	intron (NM_139062, intron 8 of 9)	intron (NM_139062, intron 8 of 9)	9892	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
92529	chr17	8930851	8930950	+	0	NA	intron (NM_001142633, intron 1 of 18)	L1MD1|LINE|L1	-18383	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
161119	chr3	38298251	38298500	+	0	NA	intron (NM_001320033, intron 1 of 10)	L1MC4|LINE|L1	-7561	NM_004803	9389		NM_004803	ENSG00000144671	SLC22A14	OCTL2|OCTL4|ORCTL4	solute carrier family 22 member 14	protein-coding
24800	chr10	68201	68400	+	0	NA	Intergenic	Intergenic	-19004	NM_177987	347688		NM_177987	ENSG00000261456	TUBB8	OOMD|OOMD2|OZEMA2|bA631M21.2	tubulin beta 8 class VIII	protein-coding
31412	chr10	95562401	95563280	+	0	NA	Intergenic	Intergenic	-1469	NM_015385	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
160501	chr3	30627451	30627850	+	0	NA	intron (NM_001024847, intron 2 of 7)	MER3|DNA|hAT-Charlie	21049	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
199094	chr6	111667851	111668880	+	0	NA	intron (NM_001370529, intron 11 of 11)	intron (NM_001370529, intron 11 of 11)	-62091	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
133198	chr2	113099171	113099330	+	0	NA	Intergenic	L1PBa1|LINE|L1	-18721	NM_001318914	3557		NM_000577	ENSG00000136689	IL1RN	CRMO2|DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4	interleukin 1 receptor antagonist	protein-coding
71222	chr14	105164371	105164630	+	0	NA	intron (NM_002226, intron 2 of 25)	intron (NM_002226, intron 2 of 25)	4276	NM_002226	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
97718	chr17	44352351	44352650	+	0	NA	TTS (NM_198475)	TTS (NM_198475)	7198	NM_002087	2896		NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin precursor	protein-coding
67044	chr14	67668551	67669630	+	0	NA	intron (NM_006370, intron 1 of 5)	MIR|SINE|MIR	5542	NM_006370	10490		NM_006370	ENSG00000100568	VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
141326	chr2	240557821	240558580	+	0	NA	promoter-TSS (NM_001282781)	promoter-TSS (NM_001282781)	-212	NM_016552	51281		NM_016552	ENSG00000144504	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding
129940	chr2	73828451	73829650	+	0	NA	promoter-TSS (NM_001353970)	promoter-TSS (NM_001353970)	83	NM_006463	10617		NM_006463	ENSG00000124356	STAMBP	AMSH|MICCAP	STAM binding protein	protein-coding
129696	chr2	70639901	70640300	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-86274	NM_003236	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
23384	chr1	228179921	228181300	+	0	NA	3' UTR (NM_001010867, exon 3 of 3)	3' UTR (NM_001010867, exon 3 of 3)	6040	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
206040	chr7	27098421	27098680	+	0	NA	intron (NR_038367, intron 1 of 1)	intron (NR_038367, intron 1 of 1)	2456	NR_038367	100506311		NR_038366	ENSG00000233429	HOTAIRM1	HOXA-AS1|HOXA1-AS1|NCRNA00179	HOXA transcript antisense RNA, myeloid-specific 1	ncRNA
116541	chr19	18207071	18207400	+	0	NA	TTS (NM_001369701)	TTS (NM_001369701)	2505	NR_134910	102725254		NR_134910	ENSG00000268650	LOC102725254	-	uncharacterized LOC102725254	ncRNA
233948	chrX	2520001	2520780	+	0	NA	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	-19414	NM_145177	207063		NM_145177	ENSG00000169084	DHRSX	CXorf11|DHRS5X|DHRS5Y|DHRSXY|DHRSY|SDR46C1|SDR7C6	dehydrogenase/reductase X-linked	protein-coding
229190	chr9	114619271	114619630	+	0	NA	intron (NM_001330760, intron 2 of 8)	intron (NM_001330760, intron 2 of 8)	8159	NM_153045	203197		NM_153045	ENSG00000157693	TMEM268	C9orf91	transmembrane protein 268	protein-coding
25828	chr10	11211171	11211900	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	46505	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
128219	chr2	54046951	54047450	+	0	NA	intron (NM_001320587, intron 2 of 5)	intron (NM_001320587, intron 2 of 5)	-68415	NM_001320590	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
46217	chr11	123711221	123711550	+	0	NA	Intergenic	Intergenic	19600	NM_001301819	7753		NM_003455	ENSG00000166261	ZNF202	ZKSCAN10|ZSCAN42	zinc finger protein 202	protein-coding
36289	chr11	3822201	3822630	+	0	NA	intron (NM_001256236, intron 4 of 7)	AluJb|SINE|Alu	13855	NR_104272	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
205995	chr7	26192321	26193000	+	0	NA	intron (NM_002137, intron 9 of 10)	intron (NM_002137, intron 9 of 10)	8086	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
131062	chr2	88626701	88628580	+	0	NA	promoter-TSS (NM_004836)	promoter-TSS (NM_004836)	-176	NM_004836	9451		NM_004836	ENSG00000172071	EIF2AK3	PEK|PERK|WRS	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding
58360	chr12	131661801	131662400	+	0	NA	Intergenic	CpG	-13979	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
121289	chr19	46724101	46724630	+	0	NA	intron (NM_001039877, intron 12 of 17)	intron (NM_001039877, intron 12 of 17)	-7238	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
25121	chr10	4013421	4013830	+	0	NA	Intergenic	Intergenic	22465	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
21129	chr1	203649301	203651000	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	22213	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
215779	chr8	2133751	2134700	+	0	NA	intron (NM_003970, intron 32 of 36).2	L1MC4a|LINE|L1	57636	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
4571	chr1	22061001	22062130	+	0	NA	intron (NM_044472, intron 1 of 5)	AluSx1|SINE|Alu	8856	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
58395	chr12	131900501	131900930	+	0	NA	intron (NM_003565, intron 3 of 27)	intron (NM_003565, intron 3 of 27)	6093	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
70172	chr14	100325701	100325900	+	0	NA	exon (NM_207117, exon 2 of 6)	exon (NM_207117, exon 2 of 6)	2461	NM_001350877	283600		NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDCMP|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
36938	chr11	10906671	10906850	+	0	NA	Intergenic	Intergenic	48543	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
167552	chr3	129352021	129352280	+	0	NA	Intergenic	LTR87|LTR|ERVL?	-35864	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
4366	chr1	20717471	20718850	+	0	NA	promoter-TSS (NM_001287212)	promoter-TSS (NM_001287212)	-153	NM_001122819	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
109997	chr19	1421521	1422650	+	0	NA	intron (NM_170711, intron 5 of 12)	intron (NM_170711, intron 5 of 12)	14499	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
57139	chr12	121229821	121230830	+	0	NA	intron (NR_046373, intron 7 of 10)	AluSx|SINE|Alu	20196	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
227203	chr9	88179051	88179440	+	0	NA	Intergenic	Intergenic	-40764	NM_001350978	645961		NM_001166137	ENSG00000177910	SPATA31C2	FAM75C2	SPATA31 subfamily C member 2	protein-coding
4481	chr1	21488251	21489230	+	0	NA	Intergenic	L2b|LINE|L2	-20244	NM_001369804	249		NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|HPPA|HPPC|HPPI|HPPO|TNALP|TNAP|TNS-ALP|TNSALP	alkaline phosphatase, biomineralization associated	protein-coding
33834	chr10	124092151	124093100	+	0	NA	promoter-TSS (NM_015892)	promoter-TSS (NM_015892)	-219	NM_015892	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
32354	chr10	102376271	102376630	+	0	NA	intron (NR_165087, intron 30 of 38)	intron (NR_165087, intron 30 of 38)	-17660	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
51745	chr12	53254001	53254200	+	0	NA	exon (NM_001170790, exon 2 of 2)	exon (NM_001170790, exon 2 of 2)	2005	NM_032889	84975		NM_032889	ENSG00000182544	MFSD5	SLC61A1|hsMOT2	major facilitator superfamily domain containing 5	protein-coding
77362	chr15	82810901	82811650	+	0	NA	intron (NM_001080435, intron 1 of 9)	intron (NM_001080435, intron 1 of 9)	1647	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
182274	chr5	57210371	57211700	+	0	NA	intron (NM_001331037, intron 2 of 12)	intron (NM_001331037, intron 2 of 12)	-3039	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
18053	chr1	160627801	160628200	+	0	NA	intron (NR_104401, intron 3 of 5)	THE1B|LTR|ERVL-MaLR	19044	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
49591	chr12	27143451	27143830	+	0	NA	Intergenic	Intergenic	-59513	NM_001384983	728858		NM_001080406	ENSG00000214700	C12orf71	-	chromosome 12 open reading frame 71	protein-coding
75554	chr15	66911871	66912550	+	0	NA	Intergenic	MIR3|SINE|MIR	44305	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
126294	chr2	27211441	27213100	+	0	NA	promoter-TSS (NM_021095)	promoter-TSS (NM_021095)	-2	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
69142	chr14	92548921	92549380	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	-27084	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
112916	chr19	7650151	7650250	+	0	NA	Intergenic	AluJr|SINE|Alu	13090	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
185551	chr5	131362571	131363000	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	98732	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
152996	chr22	23176151	23177350	+	0	NA	Intergenic	L2|LINE|L2	-3759	NM_004327	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
195295	chr6	36536471	36536830	+	0	NA	intron (NM_007271, intron 2 of 13)	AluSp|SINE|Alu	10829	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
26445	chr10	17425871	17426600	+	0	NA	intron (NR_144322, intron 2 of 6)	LTR53|LTR|ERVL	28360	NM_001345961	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
116025	chr19	17170621	17171350	+	0	NA	intron (NM_004145, intron 11 of 39)	MER96B|DNA|hAT-Tip100	-44372	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
91893	chr17	7285451	7285750	+	0	NA	intron (NM_001042, intron 9 of 10)	intron (NM_001042, intron 9 of 10)	3882	NM_001042	6517		NM_001042	ENSG00000181856	SLC2A4	GLUT4	solute carrier family 2 member 4	protein-coding
24728	chr1	247857301	247857880	+	0	NA	exon (NM_015431, exon 1 of 6)	exon (NM_015431, exon 1 of 6)	403	NM_015431	25893		NM_015431	ENSG00000162722	TRIM58	BIA2	tripartite motif containing 58	protein-coding
230512	chr9	128279521	128279980	+	0	NA	intron (NM_001040011, intron 2 of 4)	LTR13A|LTR|ERVK	3474	NM_001040011	375757		NM_001040011	ENSG00000175854	SWI5	C9orf119|SAE3	SWI5 homologous recombination repair protein	protein-coding
38115	chr11	35232101	35233100	+	0	NA	TTS (NM_000610)	TTS (NM_000610)	69650	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
191064	chr6	3355301	3356880	+	0	NA	intron (NM_001382320, intron 1 of 1)	L1ME3E|LINE|L1	-31940	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
91922	chr17	7321071	7321430	+	0	NA	exon (NM_001005408, exon 20 of 29)	exon (NM_001005408, exon 20 of 29)	-5890	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
75042	chr15	64154521	64154950	+	0	NA	non-coding (NR_073534, exon 7 of 7)	non-coding (NR_073534, exon 7 of 7)	3004	NM_024798	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
84502	chr16	30498621	30498880	+	0	NA	intron (NM_002209, intron 15 of 30)	AluJr|SINE|Alu	-5169	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
92431	chr17	8440051	8440550	+	0	NA	intron (NM_001025579, intron 1 of 9)	AluSg|SINE|Alu	4416	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
121666	chr19	47498171	47498400	+	0	NA	intron (NR_038457, intron 1 of 8)	intron (NR_038457, intron 1 of 8)	14003	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
179272	chr4	176318001	176318200	+	0	NA	Intergenic	Intergenic	-1866	NM_021928	60559		NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22|SPC22/23|SPC23|SPC3|YLR066W	signal peptidase complex subunit 3	protein-coding
49262	chr12	19478871	19479030	+	0	NA	intron (NM_153207, intron 3 of 7)	L1PB2|LINE|L1	38351	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
215120	chr7	155347401	155347800	+	0	NA	Intergenic	Intergenic	20333	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
25700	chr10	8952921	8953180	+	0	NA	Intergenic	Intergenic	55061	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
140997	chr2	238100921	238101180	+	0	NA	intron (NM_194312, intron 1 of 8)	intron (NM_194312, intron 1 of 8)	710	NM_194312	339768		NM_194312	ENSG00000144488	ESPNL	-	espin like	protein-coding
123857	chr19	55251051	55252280	+	0	NA	intron (NM_014931, intron 1 of 23)	intron (NM_014931, intron 1 of 23)	-6415	NR_106861	102466739		NR_106861	ENSG00000278264	MIR6803	hsa-mir-6803	microRNA 6803	ncRNA
221160	chr8	119859471	119859830	+	0	NA	Intergenic	Intergenic	-3756	NM_024094	79075		NM_024094	ENSG00000136982	DSCC1	DCC1	DNA replication and sister chromatid cohesion 1	protein-coding
115626	chr19	16090271	16090630	+	0	NA	intron (NM_001367837, intron 5 of 7)	AluJr|SINE|Alu	13434	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
24183	chr1	235891321	235891580	+	0	NA	Intergenic	AluYb8|SINE|Alu	-7737	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
56869	chr12	120286001	120286450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5555	NM_001385735	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
155939	chr22	39678121	39678380	+	0	NA	intron (NM_001003406, intron 30 of 35)	intron (NM_001003406, intron 30 of 35)	107497	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
162207	chr3	47014071	47014630	+	0	NA	TTS (NR_024046)	TTS (NR_024046)	2808	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
139092	chr2	218882651	218882750	+	0	NA	intron (NM_025216, intron 2 of 3)	intron (NM_025216, intron 2 of 3)	1848	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
192011	chr6	16347451	16347550	+	0	NA	intron (NM_000332, intron 7 of 8)	LTR12C|LTR|ERV1	108913	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
120563	chr19	44985901	44986100	+	0	NA	intron (NM_001282175, intron 6 of 13)	intron (NM_001282175, intron 6 of 13)	-15464	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
1822	chr1	6243251	6243700	+	0	NA	promoter-TSS (NM_001024598)	promoter-TSS (NM_001024598)	-704	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
142641	chr20	5736971	5738930	+	0	NA	Intergenic	Intergenic	-12437	NM_001303478	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
164503	chr3	61561421	61561780	+	0	NA	promoter-TSS (NM_002841)	promoter-TSS (NM_002841)	29	NM_002841	5793		NM_002841	ENSG00000144724	PTPRG	HPTPG|PTPG|R-PTP-GAMMA|RPTPG	protein tyrosine phosphatase receptor type G	protein-coding
152640	chr22	21517121	21518030	+	0	NA	promoter-TSS (NR_003700)	promoter-TSS (NR_003700)	-84	NR_003700	375133		NR_003700	ENSG00000293427	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
21926	chr1	207852071	207852430	+	0	NA	Intergenic	Intergenic	-29547	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
63423	chr13	114094401	114095030	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-16760	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
178948	chr4	159101001	159101650	+	0	NA	Intergenic	L2a|LINE|L2	-2726	NM_001351724	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
17884	chr1	160077201	160078030	+	0	NA	Intergenic	Intergenic	-3923	NM_004983	3765		NM_004983	ENSG00000162728	KCNJ9	GIRK3|KIR3.3	potassium inwardly rectifying channel subfamily J member 9	protein-coding
89294	chr16	88704401	88705600	+	0	NA	intron (NM_178841, intron 1 of 5)	intron (NM_178841, intron 1 of 5)	1408	NM_001171815	115992		NM_178841	ENSG00000158717	RNF166	-	ring finger protein 166	protein-coding
119478	chr19	40442321	40443700	+	0	NA	promoter-TSS (NM_013368)	promoter-TSS (NM_013368)	-412	NM_013368	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
30102	chr10	73962851	73963150	+	0	NA	Intergenic	AluYk2|SINE|Alu	-35116	NM_014000	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
160086	chr3	18789251	18789880	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-343973	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
139149	chr2	219060671	219061430	+	0	NA	promoter-TSS (NM_002181)	promoter-TSS (NM_002181)	-129	NM_002181	3549		NM_002181	ENSG00000163501	IHH	BDA1|HHG2	Indian hedgehog signaling molecule	protein-coding
209147	chr7	75154621	75155150	+	0	NA	Intergenic	AluJr|SINE|Alu	17113	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
43089	chr11	74782101	74782500	+	0	NA	intron (NM_001098638, intron 1 of 5)	L2c|LINE|L2	33451	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
226097	chr9	62833501	62834450	+	0	NA	TTS (NR_135128)	TTS (NR_135128)	4371	NR_135128	100132249		NR_135128		LOC100132249	-	uncharacterized LOC100132249	ncRNA
213880	chr7	142399921	142400300	+	0	NA	Intergenic	Intergenic	-74417	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
33017	chr10	110681071	110681330	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	36864	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
63375	chr13	114053051	114053650	+	0	NA	intron (NM_001320822, intron 2 of 23).2	intron (NM_001320822, intron 2 of 23).2	24605	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
111443	chr19	3809951	3810480	+	0	NA	intron (NM_015174, intron 16 of 18)	intron (NM_015174, intron 16 of 18)	-8416	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
86573	chr16	67229601	67230850	+	0	NA	TTS (NR_134524)	TTS (NR_134524)	3095	NM_014187	29100		NM_014187	ENSG00000168701	TMEM208	HSPC171|SND2|hSND2	transmembrane protein 208	protein-coding
76666	chr15	75688771	75688930	+	0	NA	exon (NM_001897, exon 3 of 10)	exon (NM_001897, exon 3 of 10)	23998	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
136526	chr2	177258871	177259230	+	0	NA	intron (NM_001313902, intron 1 of 3)	AluSx|SINE|Alu	-3040	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
61826	chr13	75765771	75765930	+	0	NA	intron (NM_001330583, intron 2 of 28)	intron (NM_001330583, intron 2 of 28)	5189	NM_015842	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
220637	chr8	100949351	100949600	+	0	NA	intron (NM_003406, intron 1 of 5)	intron (NM_003406, intron 1 of 5)	1096	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
128495	chr2	58569701	58570100	+	0	NA	intron (NR_033873, intron 1 of 13)	intron (NR_033873, intron 1 of 13)	49147	NR_033873	400955		NR_033873	ENSG00000233723	LINC01122	-	long intergenic non-protein coding RNA 1122	ncRNA
177152	chr4	108132651	108133630	+	0	NA	intron (NM_016269, intron 3 of 11)	AluSg|SINE|Alu	33657	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
190236	chr5	178442751	178443050	+	0	NA	intron (NM_173465, intron 2 of 28)	intron (NM_173465, intron 2 of 28)	147493	NM_173465	91522		NM_173465	ENSG00000050767	COL23A1	-	collagen type XXIII alpha 1 chain	protein-coding
234828	chrX	24235371	24235530	+	0	NA	Intergenic	Intergenic	77943	NM_001136233	170067		NM_001136233	ENSG00000223611	SUPT20HL2	FAM48B1|FAM48B2	SUPT20H like 2	protein-coding
121698	chr19	47572771	47574480	+	0	NA	promoter-TSS (NM_001277075)	promoter-TSS (NM_001277075)	-477	NM_001277075	84215		NM_032255	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
23492	chr1	228643601	228644740	+	0	NA	promoter-TSS (NR_002834)	promoter-TSS (NR_002834)	-477	NR_037962	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
161360	chr3	40460871	40461600	+	0	NA	intron (NM_001034996, intron 3 of 5)	intron (NM_001034996, intron 3 of 5)	3896	NM_001034996	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
154677	chr22	36364721	36365520	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	22847	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
29772	chr10	72263451	72264450	+	0	NA	Intergenic	Intergenic	-9974	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
8292	chr1	40042851	40043150	+	0	NA	intron (NM_001350484, intron 2 of 13)	L2c|LINE|L2	1974	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
176742	chr4	101417221	101417480	+	0	NA	Intergenic	MER52A|LTR|ERV1	69573	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
181125	chr5	37378371	37379540	+	0	NA	promoter-TSS (NM_001345998)	promoter-TSS (NM_001345998)	-363	NM_001345998	55100		NM_018034	ENSG00000082068	WDR70	-	WD repeat domain 70	protein-coding
6932	chr1	31700721	31701580	+	0	NA	intron (NM_001856, intron 2 of 70)	intron (NM_001856, intron 2 of 70)	2867	NM_001856	1307		NM_001856	ENSG00000084636	COL16A1	447AA|FP1572	collagen type XVI alpha 1 chain	protein-coding
47257	chr12	1423001	1423200	+	0	NA	intron (NR_027946, intron 17 of 18)	MER57E1|LTR|ERV1	-77391	NR_028415	100292680		NR_028415	ENSG00000249628	LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
31605	chr10	97366121	97367650	+	0	NA	exon (NM_001284337, exon 24 of 31)	exon (NM_001284337, exon 24 of 31)	-32156	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
32633	chr10	103683821	103684280	+	0	NA	intron (NM_014631, intron 6 of 13)	intron (NM_014631, intron 6 of 13)	-5835	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
100328	chr17	59847421	59848050	+	0	NA	Intergenic	Intergenic	6469	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
167864	chr3	134373921	134375150	+	0	NA	promoter-TSS (NM_016201)	promoter-TSS (NM_016201)	-88	NM_016201	51421		NM_016201	ENSG00000114019	AMOTL2	LCCP	angiomotin like 2	protein-coding
14731	chr1	145983101	145983850	+	0	NA	Intergenic	Intergenic	12269	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
96758	chr17	41706351	41707150	+	0	NA	Intergenic	Intergenic	-5581	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
93496	chr17	18967771	18967930	+	0	NA	TTS (NM_001039999)	TTS (NM_001039999)	15685	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
4155	chr1	19361221	19361950	+	0	NA	intron (NM_001206540, intron 4 of 9)	intron (NM_001206540, intron 4 of 9)	49259	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
2410	chr1	9573671	9574080	+	0	NA	intron (NM_032315, intron 5 of 6)	Charlie4a|DNA|hAT-Charlie	-15036	NM_001010866	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
145750	chr20	45100651	45101450	+	0	NA	promoter-TSS (NM_001322799)	promoter-TSS (NM_001322799)	77	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
104985	chr17	82001001	82001580	+	0	NA	intron (NR_045351, intron 6 of 14)	intron (NR_045351, intron 6 of 14)	21588	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
171519	chr3	196644901	196645500	+	0	NA	intron (NM_198565, intron 1 of 2)	L2c|LINE|L2	5506	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
239124	chrY	11304901	11305600	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1116340	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
218427	chr8	47705051	47705150	+	0	NA	intron (NM_001352944, intron 11 of 13)	intron (NM_001352944, intron 11 of 13)	33064	NM_005195	1052		NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT enhancer binding protein delta	protein-coding
15286	chr1	149811731	149813000	+	0	NA	promoter-TSS (NM_001161334)	promoter-TSS (NM_001161334)	5	NM_001024599	440689		NM_001024599	ENSG00000203814	H2BC18	HIST2H2BF	H2B clustered histone 18	protein-coding
114802	chr19	13791601	13791930	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3678	NM_001367834	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
152968	chr22	23068271	23068830	+	0	NA	intron (NM_014433, intron 4 of 6)	intron (NM_014433, intron 4 of 6)	-1969	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
99776	chr17	51118321	51118650	+	0	NA	intron (NM_001130527, intron 1 of 29)	intron (NM_001130527, intron 1 of 29)	2383	NM_001130527	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
170101	chr3	183102701	183103780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3653	NR_120639	56922		NM_020166	ENSG00000078070	MCCC1	MCC-B|MCCA|MCCCalpha	methylcrotonyl-CoA carboxylase subunit 1	protein-coding
178660	chr4	152464001	152464600	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	25116	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
66388	chr14	61491901	61493180	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	77654	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
66512	chr14	61717671	61718600	+	0	NA	intron (NR_144368, intron 1 of 2)	intron (NR_144368, intron 1 of 2)	20513	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
122131	chr19	48839671	48839830	+	0	NA	intron (NM_020904, intron 17 of 19)	MER92C|LTR|ERV1	-3259	NM_016246	51171		NM_016246	ENSG00000087076	HSD17B14	DHRS10|SDR47C1|retSDR3	hydroxysteroid 17-beta dehydrogenase 14	protein-coding
79357	chr16	627021	627280	+	0	NA	intron (NM_001172664, intron 6 of 6)	intron (NM_001172664, intron 6 of 6)	-3835	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
108132	chr18	62421821	62422080	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	96640	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
22477	chr1	221716801	221717280	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	19860	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
87950	chr16	79596301	79597030	+	0	NA	3' UTR (NM_001031804, exon 1 of 1)	3' UTR (NM_001031804, exon 1 of 1)	4072	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
155751	chr22	39180051	39180150	+	0	NA	Intergenic	L2a|LINE|L2	-27420	NM_175709	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
149328	chr21	29045821	29046150	+	0	NA	intron (NM_006447, intron 13 of 17)	AluSz|SINE|Alu	21317	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
78574	chr15	93027371	93028080	+	0	NA	3' UTR (NM_001271, exon 39 of 39)	3' UTR (NM_001271, exon 39 of 39)	45431	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
178589	chr4	151411051	151411550	+	0	NA	intron (NM_001348694, intron 1 of 12)	HAL1|LINE|L1	2124	NM_001109977	729830		NM_001109977	ENSG00000164142	FHIP1A	FAM160A1|FHIP-L	FHF complex subunit HOOK interacting protein 1A	protein-coding
15073	chr1	148458001	148459600	+	0	NA	intron (NR_027468, intron 1 of 4)	CpG	1120	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
198367	chr6	105455451	105456030	+	0	NA	Intergenic	Intergenic	-52658	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
141277	chr2	240032551	240033050	+	0	NA	Intergenic	Intergenic	-2371	NM_001005853	389090		NM_001001962	ENSG00000182083	OR6B2	OR2-1|OR6B2P	olfactory receptor family 6 subfamily B member 2	protein-coding
101055	chr17	64829821	64830080	+	0	NA	intron (NR_024386, intron 1 of 10)	intron (NR_024386, intron 1 of 10)	7234	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
99256	chr17	49718901	49719300	+	0	NA	intron (NM_030802, intron 5 of 7)	AluSg7|SINE|Alu	-11136	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
36908	chr11	10791471	10791630	+	0	NA	Intergenic	MIRb|SINE|MIR	10058	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
12642	chr1	109239221	109239900	+	0	NA	Intergenic	Intergenic	-9979	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
161736	chr3	44337801	44339250	+	0	NA	promoter-TSS (NM_001029839)	promoter-TSS (NM_001029839)	73	NM_001029839	285343		NM_173826	ENSG00000179152	TCAIM	C3orf23|TOAG-1|TOAG1	T cell activation inhibitor, mitochondrial	protein-coding
2365	chr1	9295751	9295850	+	0	NA	intron (NM_025106, intron 1 of 2)	intron (NM_025106, intron 1 of 2)	2906	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
56520	chr12	116594121	116594680	+	0	NA	Intergenic	MER74A|LTR|ERVL	35019	NM_001085481	643246		NM_001085481	ENSG00000258102	MAP1LC3B2	ATG8G	microtubule associated protein 1 light chain 3 beta 2	protein-coding
126788	chr2	30271001	30271400	+	0	NA	Intergenic	Intergenic	39666	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
143297	chr20	25296621	25297180	+	0	NA	3' UTR (NM_002862, exon 20 of 20)	3' UTR (NM_002862, exon 20 of 20)	48815	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
139176	chr2	219208751	219208850	+	0	NA	TTS (NM_005689)	TTS (NM_005689)	2016	NM_001270999	130617		NM_138802	ENSG00000158552	ZFAND2B	AIRAPL	zinc finger AN1-type containing 2B	protein-coding
41194	chr11	65643301	65643530	+	0	NA	intron (NM_153253, intron 4 of 15)	intron (NM_153253, intron 4 of 15)	3294	NM_153253	6494		NM_006747	ENSG00000213445	SIPA1	SPA1	signal-induced proliferation-associated 1	protein-coding
151245	chr21	45292021	45293650	+	0	NA	non-coding (NR_026943, exon 3 of 3)	non-coding (NR_026943, exon 3 of 3)	4783	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
96278	chr17	39915901	39916500	+	0	NA	intron (NM_001042471, intron 2 of 9)	intron (NM_001042471, intron 2 of 9)	1340	NM_001369402	55876		NM_018530	ENSG00000073605	GSDMB	GSDMB-1|GSDML|PP4052|PRO2521	gasdermin B	protein-coding
79159	chr16	280371	281530	+	0	NA	intron (NM_001176, intron 1 of 5)	CpG	359	NM_001176	398		NM_001176	ENSG00000242173	ARHGDIG	RHOGDI-3	Rho GDP dissociation inhibitor gamma	protein-coding
131362	chr2	96182751	96183480	+	0	NA	Intergenic	AluSx3|SINE|Alu	-25301	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
187996	chr5	149532501	149532900	+	0	NA	intron (NM_001892, intron 2 of 9)	Charlie4a|DNA|hAT-Charlie	17665	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
176597	chr4	98939821	98940380	+	0	NA	Intergenic	Intergenic	-9463	NM_001968	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
198861	chr6	109384571	109384730	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-1838	NM_001142402	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
174109	chr4	36194421	36194680	+	0	NA	intron (NR_146894, intron 6 of 32)	intron (NR_146894, intron 6 of 32)	49389	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
206875	chr7	37643921	37644380	+	0	NA	Intergenic	MER76|LTR|ERVL	-39616	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
61051	chr13	48245901	48246200	+	0	NA	intron (NM_021999, intron 1 of 5)	AluY|SINE|Alu	12844	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
82566	chr16	18759721	18760300	+	0	NA	Intergenic	Intergenic	30324	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
65059	chr14	39276101	39276500	+	0	NA	intron (NM_203355, intron 1 of 22)	intron (NM_203355, intron 1 of 22)	8915	NM_001354144	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
157274	chr22	44047921	44048400	+	0	NA	intron (NM_001243386, intron 1 of 11)	intron (NM_001243386, intron 1 of 11)	-20957	NM_001243385	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
81162	chr16	4422521	4423050	+	0	NA	Intergenic	AluSq4|SINE|Alu	-3020	NM_001286516	9093		NM_005147	ENSG00000103423	DNAJA3	HCA57|TID1|Tid1-L|Tid1-S|hTID-1	DnaJ heat shock protein family (Hsp40) member A3	protein-coding
133815	chr2	127824851	127824950	+	0	NA	Intergenic	AluY|SINE|Alu	-13713	NM_001006622	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
107470	chr18	46969351	46969800	+	0	NA	intron (NM_001353908, intron 3 of 11)	CpG	22740	NM_001367621	83473		NM_031303	ENSG00000167216	KATNAL2	-	katanin catalytic subunit A1 like 2	protein-coding
206340	chr7	30324351	30324650	+	0	NA	intron (NM_147128, intron 2 of 4)	AluSx|SINE|Alu	-34610	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
141026	chr2	238175621	238176180	+	0	NA	intron (NM_030768, intron 9 of 11)	FAM|SINE|Alu	16930	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
176411	chr4	89156521	89156780	+	0	NA	Intergenic	AluSx|SINE|Alu	45117	NM_145715	166815		NM_145715	ENSG00000180346	TIGD2	HEL106	tigger transposable element derived 2	protein-coding
29252	chr10	69107251	69108230	+	0	NA	Intergenic	AluSx|SINE|Alu	-16413	NM_001035260	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
160534	chr3	30661021	30662000	+	0	NA	intron (NM_001024847, intron 4 of 7)	L3|LINE|CR1	54909	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
74790	chr15	63279451	63280200	+	0	NA	intron (NM_001145646, intron 2 of 4)	AluSq2|SINE|Alu	2220	NM_031301	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
24830	chr10	338521	338780	+	0	NA	intron (NM_014974, intron 29 of 36)	Tigger3b|DNA|TcMar-Tigger	158656	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
16227	chr1	153937521	153938100	+	0	NA	exon (NM_001367466, exon 14 of 28)	exon (NM_001367466, exon 14 of 28)	7446	NM_001367466	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
187640	chr5	143008551	143011030	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-140880	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
103514	chr17	78438151	78440380	+	0	NA	intron (NM_173628, intron 72 of 80)	intron (NM_173628, intron 72 of 80)	-45645	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
199394	chr6	116389151	116389450	+	0	NA	intron (NM_001322944, intron 1 of 4)	MIR|SINE|MIR	-17581	NR_148944	100287467		NR_148944		LOC100287467	-	uncharacterized LOC100287467	ncRNA
146854	chr20	51438001	51438450	+	0	NA	intron (NM_173091, intron 6 of 9)	intron (NM_173091, intron 6 of 9)	14752	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
221313	chr8	123035221	123035700	+	0	NA	intron (NM_024295, intron 1 of 7)	intron (NM_024295, intron 1 of 7)	6842	NM_024295	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
191408	chr6	8666801	8667130	+	0	NA	intron (NR_038980, intron 3 of 4)	LTR12C|LTR|ERV1	14756	NR_004855	728655		NR_004855		HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
198605	chr6	107720551	107721050	+	0	NA	exon (NM_198081, exon 6 of 8)	exon (NM_198081, exon 6 of 8)	11350	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
20511	chr1	198667471	198668150	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	28770	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
236574	chrX	72680801	72681300	+	0	NA	intron (NM_001122670, intron 5 of 30)	SVA_F|Retroposon|SVA	-7899	NR_110391	101928259		NR_110391	ENSG00000231944	PHKA1-AS1	-	PHKA1 antisense RNA 1	ncRNA
213752	chr7	140454651	140455350	+	0	NA	intron (NR_117084, intron 5 of 5)	intron (NR_117084, intron 5 of 5)	24505	NM_013446	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
117859	chr19	32403601	32404000	+	0	NA	intron (NR_046201, intron 1 of 2)	intron (NR_046201, intron 1 of 2)	1739	NR_046201	400684		NR_046201	ENSG00000267213	DPY19L3-DT	-	DPY19L3 divergent transcript	ncRNA
74765	chr15	63238971	63239500	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	-38315	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
1572	chr1	3542651	3543150	+	0	NA	intron (NM_001409, intron 4 of 36)	intron (NM_001409, intron 4 of 36)	17890	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
28200	chr10	44959271	44960580	+	0	NA	promoter-TSS (NR_033842)	promoter-TSS (NR_033842)	123	NM_032023	83937		NM_032023	ENSG00000107551	RASSF4	AD037	Ras association domain family member 4	protein-coding
233583	chrX	309801	310480	+	0	NA	intron (NM_012227, intron 7 of 9)	MLT1C|LTR|ERVL-MaLR	8679	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
228383	chr9	99118901	99120080	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	14377	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
144645	chr20	35994921	35995330	+	0	NA	non-coding (NR_130714, exon 6 of 9)	non-coding (NR_130714, exon 6 of 9)	26535	NM_001365709	140894		NM_080834	ENSG00000149646	CNBD2	C20orf152|CNMPD1	cyclic nucleotide binding domain containing 2	protein-coding
57906	chr12	123459501	123460780	+	0	NA	intron (NM_180699, intron 1 of 1)	intron (NM_180699, intron 1 of 1)	436	NM_180699	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
198955	chr6	110873121	110873540	+	0	NA	intron (NM_001287215, intron 1 of 8)	AluSx|SINE|Alu	-1454	NM_001634	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
214232	chr7	148864751	148865050	+	0	NA	intron (NM_001203248, intron 1 of 19)	AluSx1|SINE|Alu	18585	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
194015	chr6	31814101	31815100	+	0	NA	promoter-TSS (NM_005345)	promoter-TSS (NM_005345)	683	NM_005527	3305		NM_005527	ENSG00000204390	HSPA1L	HSP70-1L|HSP70-HOM|HSP70T|hum70t	heat shock protein family A (Hsp70) member 1 like	protein-coding
73874	chr15	50351051	50352030	+	0	NA	non-coding (NR_026891, exon 1 of 1)	non-coding (NR_026891, exon 1 of 1)	-2634	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
195413	chr6	36866001	36866200	+	0	NA	intron (NM_016059, intron 2 of 3)	intron (NM_016059, intron 2 of 3)	-5744	NM_001286636	221477		NM_152734	ENSG00000198663	C6orf89	BRAP|PS1TP5TP1	chromosome 6 open reading frame 89	protein-coding
29434	chr10	70354421	70354680	+	0	NA	intron (NM_001278214, intron 1 of 3)	MER5A|DNA|hAT-Charlie	22229	NM_001278213	55222		NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
47777	chr12	6557971	6558880	+	0	NA	intron (NM_001258310, intron 15 of 16)	AluSx|SINE|Alu	-2383	NM_001330324	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
123678	chr19	54973201	54974100	+	0	NA	intron (NR_145325, intron 2 of 12)	AluSq2|SINE|Alu	7276	NR_145325	55655		NM_017852	ENSG00000022556	NLRP2	CLR19.9|NALP2|NBS1|OZEMA18|PAN1|PYPAF2	NLR family pyrin domain containing 2	protein-coding
192884	chr6	27481271	27481430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8232	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
225308	chr9	34586151	34586830	+	0	NA	intron (NM_001207011, intron 1 of 9)	intron (NM_001207011, intron 1 of 9)	3234	NM_147164	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
15108	chr1	148627701	148627900	+	0	NA	intron (NM_001364008, intron 2 of 4)	L2b|LINE|L2	-32083	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
9216	chr1	45670901	45671100	+	0	NA	intron (NM_021639, intron 2 of 12)	AluY|SINE|Alu	15533	NM_021639	60313		NM_021639	ENSG00000159592	GPBP1L1	SP192	GC-rich promoter binding protein 1 like 1	protein-coding
161113	chr3	38208871	38209450	+	0	NA	intron (NM_005109, intron 4 of 17)	intron (NM_005109, intron 4 of 17)	43623	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
221019	chr8	116472201	116473680	+	0	NA	Intergenic	Intergenic	-147881	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
203530	chr7	830401	831050	+	0	NA	intron (NM_001367651, intron 2 of 21)	intron (NM_001367651, intron 2 of 21)	-1751	NM_001130965	23353		NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
113031	chr19	7940151	7940450	+	0	NA	intron (NM_006351, intron 2 of 12)	intron (NM_006351, intron 2 of 12)	3366	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
112662	chr19	6891951	6892430	+	0	NA	intron (NM_001974, intron 2 of 20)	intron (NM_001974, intron 2 of 20)	4611	NM_001256253	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
15460	chr1	150346921	150347330	+	0	NA	intron (NR_146768, intron 14 of 15)	intron (NR_146768, intron 14 of 15)	-16986	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
38534	chr11	45901421	45902030	+	0	NA	intron (NM_005456, intron 3 of 11)	intron (NM_005456, intron 3 of 11)	5546	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
123351	chr19	53876601	53876930	+	0	NA	TTS (NM_001020821)	TTS (NM_001020821)	-5432	NM_001316329	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
138551	chr2	207541851	207541950	+	0	NA	intron (NR_163946, intron 1 of 8)	L1MB8|LINE|L1	11938	NM_134442	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
215674	chr8	727471	727630	+	0	NA	intron (NM_207332, intron 1 of 5)	intron (NM_207332, intron 1 of 5)	3674	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
113304	chr19	8565801	8566450	+	0	NA	intron (NM_012335, intron 1 of 27)	intron (NM_012335, intron 1 of 27)	11317	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
238262	chrX	148310401	148311050	+	0	NA	Intergenic	(CCCTCA)n|Simple_repeat|Simple_repeat	-189892	NM_001169124	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
83232	chr16	23841921	23842550	+	0	NA	intron (NM_212535, intron 2 of 16)	MIRb|SINE|MIR	6252	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
104492	chr17	81160001	81160200	+	0	NA	intron (NM_001080395, intron 1 of 13)	intron (NM_001080395, intron 1 of 13)	-5407	NM_001354639	388428		NM_207389	ENSG00000225180	PVALEF	AATK-AS1	parvalbumin like EF-hand containing	protein-coding
231963	chr9	133151151	133151850	+	0	NA	Intergenic	MIR3|SINE|MIR	-2290	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
165108	chr3	71581051	71581730	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	2338	NM_001349338	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
228089	chr9	96416851	96417900	+	0	NA	intron (NM_153695, intron 1 of 4)	CpG	995	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
108964	chr18	79526371	79526530	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-52832	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
154858	chr22	37124571	37124730	+	0	NA	Intergenic	Intergenic	-14937	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
83454	chr16	27330721	27331380	+	0	NA	intron (NM_000418, intron 2 of 10)	intron (NM_000418, intron 2 of 10)	17076	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
11809	chr1	92830621	92830980	+	0	NA	Intergenic	AluSc|SINE|Alu	-1186	NR_146333	6125		NM_000969	ENSG00000122406	RPL5	L5|MSTP030|PPP1R135|uL18	ribosomal protein L5	protein-coding
15801	chr1	151285951	151286050	+	0	NA	5' UTR (NM_001304763, exon 2 of 10)	5' UTR (NM_001304763, exon 2 of 10)	3701	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
168183	chr3	140940271	140940700	+	0	NA	Intergenic	HSMAR2|DNA|TcMar-Mariner	-1351	NM_018155	55186		NM_018155	ENSG00000114120	SLC25A36	HHF8|PNC2	solute carrier family 25 member 36	protein-coding
27267	chr10	30002371	30002730	+	0	NA	Intergenic	Intergenic	57036	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
15495	chr1	150428371	150428730	+	0	NA	intron (NM_015203, intron 2 of 10)	intron (NM_015203, intron 2 of 10)	-58869	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
127833	chr2	45000521	45000780	+	0	NA	Intergenic	CpG	8802	NM_016932	10736		NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
64930	chr14	35800871	35801230	+	0	NA	intron (NM_014990, intron 1 of 40)	L1MA4A|LINE|L1	8245	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
225971	chr9	41188221	41188900	+	0	NA	intron (NM_001286836, intron 1 of 2)	intron (NM_001286836, intron 1 of 2)	747	NM_001378116	445571		NM_201453	ENSG00000196873	ZNG1C	CBWD3|bA561O23.1	Zn regulated GTPase metalloprotein activator 1C	protein-coding
93285	chr17	18109401	18109680	+	0	NA	intron (NM_016239, intron 1 of 64)	intron (NM_016239, intron 1 of 64)	784	NM_016239	51168		NM_016239	ENSG00000091536	MYO15A	DFNB3|MYO15	myosin XVA	protein-coding
40508	chr11	64273401	64274550	+	0	NA	intron (NM_032989, intron 2 of 3)	intron (NM_032989, intron 2 of 3)	3444	NM_001378084	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
2156	chr1	8419001	8419400	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	4632	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
7519	chr1	33867751	33867850	+	0	NA	intron (NM_052896, intron 5 of 69)	intron (NM_052896, intron 5 of 69)	-1156	NR_038372	402779		NR_038372	ENSG00000231163	CSMD2-AS1	-	CSMD2 antisense RNA 1	ncRNA
124135	chr19	55690971	55691130	+	0	NA	intron (NM_001321263, intron 6 of 10)	intron (NM_001321263, intron 6 of 10)	14425	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
80690	chr16	3049601	3050200	+	0	NA	intron (NM_022468, intron 2 of 9)	MIR|SINE|MIR	3339	NM_022468	64386		NM_004142	ENSG00000008516	MMP25	MMP-25|MMP20|MMP20A|MMPL1|MT-MMP 6|MT-MMP6|MT6-MMP|MT6MMP|MTMMP6	matrix metallopeptidase 25	protein-coding
137256	chr2	192194171	192196130	+	0	NA	promoter-TSS (NM_016192)	promoter-TSS (NM_016192)	-217	NM_001305145	23671		NM_016192	ENSG00000144339	TMEFF2	CT120.2|HPP1|TENB2|TPEF|TR|TR-2	transmembrane protein with EGF like and two follistatin like domains 2	protein-coding
121283	chr19	46719651	46720000	+	0	NA	3' UTR (NM_013403, exon 18 of 18)	3' UTR (NM_013403, exon 18 of 18)	-2698	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
193936	chr6	31654471	31654800	+	0	NA	intron (NR_045828, intron 1 of 5).7	AluJb|SINE|Alu	-1259	NM_019101	55937		NM_019101	ENSG00000204444	APOM	G3a|HSPC336|NG20|apo-M	apolipoprotein M	protein-coding
72673	chr15	38543201	38543580	+	0	NA	intron (NM_001128602, intron 2 of 15)	L1MEf|LINE|L1	21424	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
215773	chr8	2126771	2128130	+	0	NA	intron (NM_003970, intron 31 of 36).2	intron (NM_003970, intron 31 of 36).2	50861	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
235721	chrX	48911051	48912860	+	0	NA	promoter-TSS (NM_001282651)	promoter-TSS (NM_001282651)	3	NM_001282648	7355		NM_005660	ENSG00000102100	SLC35A2	CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL	solute carrier family 35 member A2	protein-coding
145882	chr20	45948101	45948300	+	0	NA	TTS (NM_022095)	TTS (NM_022095)	13517	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
121912	chr19	48412671	48414200	+	0	NA	intron (NM_000836, intron 4 of 13)	AluSx1|SINE|Alu	19767	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
48385	chr12	9606801	9607000	+	0	NA	intron (NM_002258, intron 1 of 5)	AluJo|SINE|Alu	1016	NM_002258	3820		NM_002258	ENSG00000111796	KLRB1	CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A	killer cell lectin like receptor B1	protein-coding
68079	chr14	75272901	75273530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5613	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
8963	chr1	44417771	44418230	+	0	NA	intron (NM_018150, intron 2 of 14)	CpG	-6001	NM_001319957	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
80665	chr16	3016301	3016680	+	0	NA	intron (NM_021195, intron 1 of 1)	AluSx|SINE|Alu	1693	NM_021195	9074		NM_021195	ENSG00000184697	CLDN6	-	claudin 6	protein-coding
187968	chr5	149430471	149430630	+	0	NA	promoter-TSS (NR_029686)	promoter-TSS (NR_029686)	-96	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
56671	chr12	119997601	119998180	+	0	NA	intron (NR_147894, intron 1 of 8)	AluSg|SINE|Alu	8046	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
14120	chr1	120939351	120940250	+	0	NA	intron (NR_109754, intron 1 of 2)	LTR71B|LTR|ERV1	-2800	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
18786	chr1	167542351	167542650	+	0	NA	intron (NM_003851, intron 3 of 3)	MER5A1|DNA|hAT-Charlie	11262	NM_003851	8804		NM_003851	ENSG00000143162	CREG1	CREG	cellular repressor of E1A stimulated genes 1	protein-coding
128213	chr2	53996471	53996730	+	0	NA	intron (NM_001320587, intron 2 of 5)	LTR16B1|LTR|ERVL	25487	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
143122	chr20	23449171	23449730	+	0	NA	TTS (NM_130794)	TTS (NM_130794)	3426	NM_080830	140880		NM_080830	ENSG00000125831	CST11	CST8L|CTES2|SC13|dJ322G13.6	cystatin 11	protein-coding
169090	chr3	154318021	154318280	+	0	NA	intron (NM_020865, intron 1 of 24)	intron (NM_020865, intron 1 of 24)	6337	NM_020865	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
6909	chr1	31621951	31622250	+	0	NA	intron (NM_001525, intron 6 of 8)	intron (NM_001525, intron 6 of 8)	4411	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
159154	chr3	12755651	12755950	+	0	NA	intron (NM_001284406, intron 1 of 11)	Charlie7|DNA|hAT-Charlie	3459	NM_001284407	55287		NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
57337	chr12	121710521	121710950	+	0	NA	Intergenic	AluJb|SINE|Alu	-2017	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
60030	chr13	32594121	32594380	+	0	NA	intron (NM_015032, intron 1 of 34)	intron (NM_015032, intron 1 of 34)	7798	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
39892	chr11	62502201	62502400	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	43364	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
224707	chr9	21413401	21413980	+	0	NA	Intergenic	L1M1|LINE|L1	4573	NM_002170	3445		NM_002170	ENSG00000120242	IFNA8	IFN-alphaB	interferon alpha 8	protein-coding
102981	chr17	76725351	76727600	+	0	NA	promoter-TSS (NM_001302705)	promoter-TSS (NM_001302705)	131	NM_015167	23210		NM_015167	ENSG00000070495	JMJD6	PSR|PTDSR|PTDSR1	jumonji domain containing 6, arginine demethylase and lysine hydroxylase	protein-coding
128982	chr2	64699801	64700500	+	0	NA	Intergenic	Intergenic	-46237	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
39923	chr11	62528021	62528430	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	17439	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
198348	chr6	105087601	105087880	+	0	NA	Intergenic	Intergenic	48606	NM_147147	11149		NM_007073	ENSG00000112276	BVES	CARICK|HBVES|LGMD2X|LGMDR25|POP1|POPDC1	blood vessel epicardial substance	protein-coding
182485	chr5	62410501	62410780	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2123	NM_016338	51194		NM_016338	ENSG00000086200	IPO11	RanBP11	importin 11	protein-coding
87234	chr16	69616051	69616350	+	0	NA	intron (NM_138713, intron 2 of 14)	intron (NM_138713, intron 2 of 14)	50234	NM_173215	10725		NM_006599	ENSG00000102908	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T cells 5	protein-coding
207503	chr7	44767371	44767680	+	0	NA	exon (NM_031449, exon 19 of 19)	exon (NM_031449, exon 19 of 19)	11337	NM_174929	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
119822	chr19	41355151	41355530	+	0	NA	intron (NM_030578, intron 3 of 3)	L2b|LINE|L2	-1418	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
24144	chr1	235849321	235849780	+	0	NA	intron (NM_001301365, intron 1 of 52)	L1PB1|LINE|L1	3510	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
173491	chr4	9238621	9238750	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	4300	NM_001256894	100288520		NM_001256894	ENSG00000223569	USP17L15	-	ubiquitin specific peptidase 17 like family member 15	protein-coding
140690	chr2	234273821	234274900	+	0	NA	Intergenic	MER34C|LTR|ERV1	180235	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
234104	chrX	9456251	9457080	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-6630	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
30324	chr10	75772301	75772500	+	0	NA	intron (NR_131178, intron 1 of 7)	Tigger18a|DNA|TcMar-Tigger	-10361	NM_032024	83938		NM_032024	ENSG00000148655	LRMDA	C10orf11|CDA017	leucine rich melanocyte differentiation associated	protein-coding
106594	chr18	22190771	22191030	+	0	NA	intron (NM_005257, intron 6 of 6)	intron (NM_005257, intron 6 of 6)	21311	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
120914	chr19	45632121	45632930	+	0	NA	intron (NR_147903, intron 9 of 19)	Charlie10|DNA|hAT-Charlie	6562	NR_029886	442902		NR_029886	ENSG00000284544	MIR330	MIRN330|hsa-mir-330|mir-330	microRNA 330	ncRNA
9176	chr1	45593821	45594230	+	0	NA	intron (NM_001195193, intron 2 of 12)	AluJo|SINE|Alu	9984	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
217019	chr8	23219401	23220090	+	0	NA	intron (NM_003844, intron 1 of 9)	intron (NM_003844, intron 1 of 9)	5357	NM_003844	8797		NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
149263	chr21	26070871	26071350	+	0	NA	intron (NM_001385253, intron 3 of 16)	intron (NM_001385253, intron 3 of 16)	69280	NM_001136016	351		NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|alpha-sAPP|preA4	amyloid beta precursor protein	protein-coding
398	chr1	1056851	1056950	+	0	NA	TTS (NM_001364727)	TTS (NM_001364727)	-2834	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
214066	chr7	143393751	143394250	+	0	NA	intron (NM_005232, intron 15 of 17)	intron (NM_005232, intron 15 of 17)	11314	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
46568	chr11	128497051	128497930	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	24820	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
41002	chr11	65414851	65415150	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-7798	NR_028272	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
225645	chr9	36384371	36384530	+	0	NA	intron (NM_194332, intron 1 of 10)	L2|LINE|L2	15819	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
162250	chr3	47280521	47281000	+	0	NA	intron (NM_022342, intron 1 of 19)	intron (NM_022342, intron 1 of 19)	1838	NM_001377477	64147		NM_022342	ENSG00000088727	KIF9	-	kinesin family member 9	protein-coding
152947	chr22	22870971	22871330	+	0	NA	Intergenic	Intergenic	-15117	NR_049835	100847006		NR_049835	ENSG00000264824	MIR5571	-	microRNA 5571	ncRNA
17843	chr1	159915551	159916230	+	0	NA	Intergenic	MIRb|SINE|MIR	7844	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
123800	chr19	55158271	55158430	+	0	NA	promoter-TSS (NM_000363)	promoter-TSS (NM_000363)	-618	NM_000363	7137		NM_000363	ENSG00000129991	TNNI3	CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI	troponin I3, cardiac type	protein-coding
182618	chr5	66306351	66306600	+	0	NA	Intergenic	Intergenic	-97029	NR_146488	101928741		NR_146488		LINC02065	-	long intergenic non-protein coding RNA 2065	ncRNA
144308	chr20	34769521	34770080	+	0	NA	intron (NM_001242539, intron 2 of 11)	intron (NM_001242539, intron 2 of 11)	12604	NM_001242539	23054		NM_014071	ENSG00000198646	NCOA6	AIB3|ASC2|NRC|PRIP|RAP250|TRBP	nuclear receptor coactivator 6	protein-coding
46739	chr11	128965401	128965780	+	0	NA	3' UTR (NM_014715, exon 13 of 13)	3' UTR (NM_014715, exon 13 of 13)	-22191	NM_022112	63970		NM_022112	ENSG00000120471	TP53AIP1	P53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein-coding
110611	chr19	2193421	2194280	+	0	NA	intron (NM_032482, intron 6 of 27)	intron (NM_032482, intron 6 of 27)	29917	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
87452	chr16	71311671	71311850	+	0	NA	Intergenic	Intergenic	-22038	NM_001324377	55783		NM_018348	ENSG00000180917	CMTR2	AFT|FTSJD1|HMTr2|MTr2	cap methyltransferase 2	protein-coding
150691	chr21	43699601	43699800	+	0	NA	Intergenic	Intergenic	-19429	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
109946	chr19	1356551	1356650	+	0	NA	promoter-TSS (NM_001369792)	promoter-TSS (NM_001369792)	-819	NM_001369792	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
173760	chr4	16890551	16890950	+	0	NA	intron (NR_130734, intron 2 of 6)	intron (NR_130734, intron 2 of 6)	7895	NM_001304434	9079		NM_001290	ENSG00000169744	LDB2	CLIM1|LDB-2|LDB1	LIM domain binding 2	protein-coding
65985	chr14	57294301	57294500	+	0	NA	non-coding (NR_026895, exon 7 of 7)	non-coding (NR_026895, exon 7 of 7)	25429	NM_018229	55745		NM_018229	ENSG00000053770	AP5M1	C14orf108|MUDENG|Mu5|MuD	adaptor related protein complex 5 subunit mu 1	protein-coding
54750	chr12	93851271	93851650	+	0	NA	TTS (NM_003805)	TTS (NM_003805)	92146	NR_135017	105369911		NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
111833	chr19	4531771	4532130	+	0	NA	intron (NM_001013706, intron 2 of 7)	intron (NM_001013706, intron 2 of 7)	3274	NM_001013706	440503		NM_001013706	ENSG00000214456	PLIN5	LSDA5|LSDP5|MLDP|OXPAT	perilipin 5	protein-coding
209196	chr7	75419221	75419930	+	0	NA	intron (NM_001099415, intron 13 of 14)	intron (NM_001099415, intron 13 of 14)	9253	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
86605	chr16	67325371	67325880	+	0	NA	intron (NM_001100915, intron 1 of 15)	intron (NM_001100915, intron 1 of 15)	1116	NM_001100915	146212		NM_001100915	ENSG00000168676	KCTD19	-	potassium channel tetramerization domain containing 19	protein-coding
18318	chr1	161175851	161176300	+	0	NA	5' UTR (NM_001199873, exon 3 of 8)	5' UTR (NM_001199873, exon 3 of 8)	1432	NM_003779	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
233055	chr9	137069921	137071280	+	0	NA	promoter-TSS (NM_178448)	promoter-TSS (NM_178448)	-43	NM_178448	89958		NM_178448	ENSG00000186193	SAPCD2	C9orf140|p42.3	suppressor APC domain containing 2	protein-coding
157992	chr22	49853051	49854810	+	0	NA	promoter-TSS (NM_014838)	promoter-TSS (NM_014838)	86	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
143279	chr20	25249871	25250650	+	0	NA	intron (NM_002862, intron 1 of 19)	intron (NM_002862, intron 1 of 19)	2175	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
117912	chr19	32969201	32969600	+	0	NA	intron (NM_032816, intron 1 of 18)	MER52C|LTR|ERV1	2558	NM_032816	84902		NM_032816	ENSG00000121289	CEP89	CCDC123|CEP123	centrosomal protein 89	protein-coding
10745	chr1	76285751	76286050	+	0	NA	intron (NM_001349108, intron 1 of 3)	(AC)n|Simple_repeat|Simple_repeat	211154	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
109690	chr19	1044951	1045650	+	0	NA	intron (NM_019112, intron 12 of 46)	intron (NM_019112, intron 12 of 46)	5193	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
237761	chrX	129753771	129754130	+	0	NA	intron (NM_003399, intron 11 of 20)	MIR|SINE|MIR	14971	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
226046	chr9	43279051	43279230	+	0	NA	Intergenic	Intergenic	152974	NR_160669	102724904		NR_160669	ENSG00000291167	LOC102724904	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
146217	chr20	48792051	48792350	+	0	NA	intron (NM_020820, intron 1 of 39)	AluSp|SINE|Alu	35799	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
100263	chr17	59560951	59561250	+	0	NA	Intergenic	AluJb|SINE|Alu	-4510	NM_001166301	79665		NM_024612	ENSG00000108406	DHX40	ARG147|DDX40|PAD	DEAH-box helicase 40	protein-coding
23990	chr1	235228501	235228700	+	0	NA	intron (NM_016374, intron 11 of 23)	AluJb|SINE|Alu	-38484	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
117283	chr19	19477721	19478580	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	37398	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
218535	chr8	53877771	53878430	+	0	NA	intron (NM_001286674, intron 1 of 2)	CpG	-2772	NR_104579	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
5817	chr1	26622501	26623030	+	0	NA	Intergenic	AluSx|SINE|Alu	68223	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
212117	chr7	116218351	116218930	+	0	NA	intron (NM_015641, intron 1 of 6)	intron (NM_015641, intron 1 of 6)	-4313	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
176579	chr4	98685771	98685930	+	0	NA	Intergenic	Intergenic	26948	NR_148380	105377342		NR_148380		TSPAN5-DT	-	TSPAN5 divergent transcript	ncRNA
97987	chr17	45270671	45271250	+	0	NA	intron (NM_003954, intron 10 of 15)	intron (NM_003954, intron 10 of 15)	-8866	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
173517	chr4	9693221	9693550	+	0	NA	Intergenic	Intergenic	-88249	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
59199	chr13	22162571	22162730	+	0	NA	Intergenic	AluJr|SINE|Alu	-47635	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
23965	chr1	235158751	235159650	+	0	NA	intron (NR_144491, intron 2 of 9)	AluJb|SINE|Alu	2050	NR_027762	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
237490	chrX	119879951	119880250	+	0	NA	Intergenic	Intergenic	8268	NM_004541	4694		NM_004541	ENSG00000125356	NDUFA1	CI-MWFE|MC1DN12|MWFE|ZNF183	NADH:ubiquinone oxidoreductase subunit A1	protein-coding
140946	chr2	237744801	237745600	+	0	NA	intron (NM_001137550, intron 11 of 23)	intron (NM_001137550, intron 11 of 23)	52995	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
40346	chr11	63950421	63950680	+	0	NA	intron (NM_024771, intron 3 of 7)	AluSx3|SINE|Alu	11219	NM_001300800	79829		NM_024771	ENSG00000110583	NAA40	NAT11|NatD|PATT1|hNatD	N-alpha-acetyltransferase 40, NatD catalytic subunit	protein-coding
136895	chr2	189440721	189442280	+	0	NA	promoter-TSS (NM_001303096)	promoter-TSS (NM_001303096)	26	NM_032168	84128		NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
185928	chr5	132873771	132873930	+	0	NA	intron (NM_052971, intron 1 of 2)	intron (NM_052971, intron 1 of 2)	182	NM_052971	116842		NM_052971	ENSG00000164406	LEAP2	LEAP-2	liver enriched antimicrobial peptide 2	protein-coding
47531	chr12	4267971	4268130	+	0	NA	intron (NR_149145, intron 1 of 3)	intron (NR_149145, intron 1 of 3)	-5712	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
190178	chr5	178182271	178182630	+	0	NA	Intergenic	MER83C|LTR|ERV1	4921	NM_001358008	64396		NM_001358008	ENSG00000244234	GMCL2	GCL|GMCL1L|GMCL1P1	germ cell-less 2, spermatogenesis associated	protein-coding
18582	chr1	164787371	164787530	+	0	NA	intron (NM_001353131, intron 2 of 7)	intron (NM_001353131, intron 2 of 7)	-12809	NR_038072	100505795		NR_038072	ENSG00000233693	PBX1-AS1	-	PBX1 antisense RNA 1	ncRNA
224882	chr9	32251471	32251650	+	0	NA	Intergenic	Intergenic	-133043	NM_001278352	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
78436	chr15	92808201	92810300	+	0	NA	Intergenic	CpG	13766	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
42794	chr11	72786101	72786500	+	0	NA	intron (NM_006645, intron 1 of 6)	AluJb|SINE|Alu	2770	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
64774	chr14	34665901	34666500	+	0	NA	Intergenic	Intergenic	-36052	NM_001366519	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
196629	chr6	44270221	44271580	+	0	NA	intron (NM_001137560, intron 1 of 2)	CpG	450	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
209168	chr7	75313171	75313430	+	0	NA	intron (NM_001382563, intron 4 of 6).5	intron (NM_001382563, intron 4 of 6).5	4582	NM_001382563	105180390		NM_001382563	ENSG00000286038	SPDYE13	SPDYE13P	speedy/RINGO cell cycle regulator family member E13	protein-coding
161532	chr3	42611801	42612000	+	0	NA	TTS (NR_125400)	TTS (NR_125400)	-10822	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
90711	chr17	1832171	1832330	+	0	NA	intron (NM_001355120, intron 1 of 16)	L2a|LINE|L2	2245	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
64615	chr14	30874121	30875300	+	0	NA	5' UTR (NM_001347720, exon 1 of 11)	5' UTR (NM_001347720, exon 1 of 11)	151	NM_004086	1690		NM_004086	ENSG00000100473	COCH	COCH-5B2|COCH5B2|DFNA9|DFNB110	cochlin	protein-coding
31573	chr10	97331101	97331880	+	0	NA	Intergenic	MIRb|SINE|MIR	3239	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
63865	chr14	21716201	21716700	+	0	NA	Intergenic	Intergenic	-45433	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
84223	chr16	29965551	29965850	+	0	NA	intron (NR_161465, intron 3 of 6)	AluJo|SINE|Alu	3621	NM_001083613	124446		NM_194280	ENSG00000149932	TMEM219	IGFBP-3R|IGFBP3R	transmembrane protein 219	protein-coding
178967	chr4	159487301	159487550	+	0	NA	Intergenic	Intergenic	219616	NM_014247	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
8095	chr1	39097571	39097730	+	0	NA	intron (NM_012090, intron 1 of 92)	AluJb|SINE|Alu	13483	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
30968	chr10	87866551	87866950	+	0	NA	intron (NM_001304717, intron 2 of 9)	intron (NM_001304717, intron 2 of 9)	3125	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
145707	chr20	45029551	45030450	+	0	NA	intron (NM_006282, intron 10 of 10)	intron (NM_006282, intron 10 of 10)	63488	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
56379	chr12	113163401	113163630	+	0	NA	intron (NM_024072, intron 15 of 19)	intron (NM_024072, intron 15 of 19)	-4338	NR_106956	102466222		NR_106956	ENSG00000276908	MIR7106	hsa-mir-7106	microRNA 7106	ncRNA
82762	chr16	21426351	21426650	+	0	NA	Intergenic	Charlie16a|DNA|hAT-Charlie	-1122	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
63890	chr14	21851921	21852780	+	0	NA	Intergenic	Intergenic	-181333	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
5515	chr1	25792001	25792200	+	0	NA	Intergenic	Intergenic	-8093	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
234565	chrX	19743001	19744130	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	56208	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
166720	chr3	121545271	121546400	+	0	NA	exon (NM_199420, exon 1 of 30)	exon (NM_199420, exon 1 of 30)	153	NM_199420	10721		NM_006596	ENSG00000051341	POLQ	PRO0327	DNA polymerase theta	protein-coding
85836	chr16	57005671	57006400	+	0	NA	intron (NR_169520, intron 1 of 47)	AluJb|SINE|Alu	16478	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
69218	chr14	92726121	92726780	+	0	NA	intron (NM_001008530, intron 3 of 14)	MER58D|DNA|hAT-Charlie	22177	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
169523	chr3	170128621	170129300	+	0	NA	exon (NM_024947, exon 8 of 15)	exon (NM_024947, exon 8 of 15)	52773	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
186261	chr5	134526501	134527100	+	0	NA	intron (NM_015288, intron 1 of 10)	CpG-22436	692	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
180489	chr5	14144021	14144300	+	0	NA	intron (NR_134469, intron 1 of 56)	CpG	818	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
217313	chr8	27405201	27406150	+	0	NA	intron (NM_173174, intron 7 of 35)	intron (NM_173174, intron 7 of 35)	-27695	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
220930	chr8	108249771	108250280	+	0	NA	Intergenic	L2a|LINE|L2	-1308	NM_001568	3646		NM_001568	ENSG00000104408	EIF3E	EIF3-P48|EIF3S6|INT6|eIF3-p46	eukaryotic translation initiation factor 3 subunit E	protein-coding
156031	chr22	39958101	39958300	+	0	NA	intron (NM_004810, intron 3 of 7)	L2a|LINE|L2	11383	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
204864	chr7	5833221	5833800	+	0	NA	intron (NR_023382, intron 1 of 6)	intron (NR_023382, intron 1 of 6)	10350	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
214098	chr7	143727401	143727900	+	0	NA	exon (NM_001130026, exon 8 of 8)	exon (NM_001130026, exon 8 of 8)	11804	NM_001130026	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
156304	chr22	40531751	40532880	+	0	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	1512	NM_001318139	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
172156	chr4	1213421	1214100	+	0	NA	intron (NM_001377193, intron 7 of 9)	intron (NM_001377193, intron 7 of 9)	3640	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
59027	chr13	20362971	20363350	+	0	NA	Intergenic	Intergenic	70686	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
89467	chr16	89074421	89075150	+	0	NA	Intergenic	Intergenic	-19067	NR_147928	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
25885	chr10	11264651	11265100	+	0	NA	intron (NM_001326346, intron 4 of 11)	intron (NM_001326346, intron 4 of 11)	79799	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
154970	chr22	37280651	37280950	+	0	NA	Intergenic	MIR3|SINE|MIR	-1708	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
8405	chr1	40401671	40402150	+	0	NA	intron (NM_001198980, intron 1 of 9)	intron (NM_001198980, intron 1 of 9)	5110	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
144971	chr20	37195451	37196580	+	0	NA	intron (NM_001324306, intron 2 of 15)	intron (NM_001324306, intron 2 of 15)	-16467	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
213556	chr7	139113371	139113530	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-3730	NM_020119	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
77872	chr15	88907801	88908200	+	0	NA	intron (NM_001310319, intron 1 of 6)	intron (NM_001310319, intron 1 of 6)	5168	NM_001310321	4240		NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule EGF and factor V/VIII domain containing	protein-coding
34068	chr10	124936071	124936430	+	0	NA	Intergenic	Intergenic	-5873	NM_017580	54764		NM_017580	ENSG00000019995	ZRANB1	TRABID	zinc finger RANBP2-type containing 1	protein-coding
234472	chrX	17792951	17793050	+	0	NA	Intergenic	Intergenic	55507	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
130364	chr2	85066801	85067100	+	0	NA	non-coding (NR_146453, exon 1 of 2)	non-coding (NR_146453, exon 1 of 2)	397	NR_146453	100996478		NR_146453	ENSG00000260840	LINC01964	-	long intergenic non-protein coding RNA 1964	ncRNA
91420	chr17	4715001	4716430	+	0	NA	intron (NM_001257330, intron 2 of 14)	(AC)n|Simple_repeat|Simple_repeat	5083	NM_199004	409		NM_004313	ENSG00000141480	ARRB2	ARB2|ARR2|BARR2	arrestin beta 2	protein-coding
146030	chr20	47274301	47274780	+	0	NA	intron (NM_183047, intron 11 of 22)	intron (NM_183047, intron 11 of 22)	-43962	NR_024594	100131496		NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
238036	chrX	135255621	135256080	+	0	NA	intron (NR_110381, intron 1 of 3)	intron (NR_110381, intron 1 of 3)	3789	NM_001355522	101928677		NM_001355522	ENSG00000238210	ETDA	-	embryonic testis differentiation homolog A	protein-coding
121859	chr19	48253871	48254250	+	0	NA	intron (NM_001351783, intron 1 of 12)	L1ME3G|LINE|L1	-1615	NR_040599	100505812		NR_040599	ENSG00000268001	CARD8-AS1	-	CARD8 antisense RNA 1	ncRNA
136722	chr2	181176651	181177430	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	53203	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
34994	chr11	520851	521730	+	0	NA	Intergenic	L1M5|LINE|L1	-14048	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
43437	chr11	77706301	77706530	+	0	NA	intron (NM_016578, intron 5 of 15)	MIRb|SINE|MIR	-68609	NM_001311199	1207		NM_001293	ENSG00000074201	CLNS1A	CLCI|CLNS1B|ICln	chloride nucleotide-sensitive channel 1A	protein-coding
140979	chr2	237971901	237972300	+	0	NA	intron (NM_001278305, intron 1 of 9)	intron (NM_001278305, intron 1 of 9)	3307	NM_001278305	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
29576	chr10	71707971	71708980	+	0	NA	TTS (NM_001171931)	TTS (NM_001171931)	11303	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
178355	chr4	145956321	145956800	+	0	NA	Intergenic	Intergenic	-17737	NM_178835	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
35456	chr11	1460451	1460950	+	0	NA	exon (NM_001256627, exon 20 of 20)	exon (NM_001256627, exon 20 of 20)	20186	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
26558	chr10	21649551	21649930	+	0	NA	intron (NR_136736, intron 9 of 25)	MLT1H|LTR|ERVL-MaLR	115508	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
27494	chr10	32256601	32257630	+	0	NA	Intergenic	Intergenic	90043	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
176546	chr4	98289371	98289530	+	0	NA	intron (NM_001100427, intron 1 of 14)	intron (NM_001100427, intron 1 of 14)	28066	NM_001100428	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
117698	chr19	28553051	28553150	+	0	NA	intron (NR_110759, intron 5 of 9)	intron (NR_110759, intron 5 of 9)	-53588	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
68565	chr14	89414001	89414430	+	0	NA	intron (NM_001085471, intron 1 of 6)	AluJb|SINE|Alu	3018	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
163184	chr3	50201901	50202550	+	0	NA	Intergenic	Intergenic	-3046	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
157618	chr22	46055421	46056630	+	0	NA	intron (NR_027034, intron 1 of 2)	intron (NR_027034, intron 1 of 2)	-1800	NR_165243	55267		NR_165243		PRR34	C22orf26	PRR34 long non-coding RNA	ncRNA
103963	chr17	79933701	79934230	+	0	NA	3' UTR (NM_001271844, exon 8 of 8)	3' UTR (NM_001271844, exon 8 of 8)	-7240	NR_110850	101928766		NR_110850	ENSG00000262585	LINC01979	-	long intergenic non-protein coding RNA 1979	ncRNA
187947	chr5	149269001	149269350	+	0	NA	Intergenic	Tigger16a|DNA|TcMar-Tigger	-2663	NM_001323063	134265		NM_152406	ENSG00000157510	AFAP1L1	-	actin filament associated protein 1 like 1	protein-coding
209072	chr7	74787571	74790480	+	0	NA	intron (NM_000265, intron 10 of 10)	CpG-26032	15063	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
118303	chr19	35448221	35448480	+	0	NA	promoter-TSS (NM_001370087)	promoter-TSS (NM_001370087)	93	NM_001370087	2867		NM_005306	ENSG00000126262	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
165824	chr3	105831271	105831630	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	36141	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
70606	chr14	102792021	102792480	+	0	NA	intron (NM_001199427, intron 1 of 7)	AluJr|SINE|Alu	14771	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
230133	chr9	127729851	127730450	+	0	NA	intron (NM_144965, intron 13 of 13)	intron (NM_144965, intron 13 of 13)	5144	NM_001252018	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
229727	chr9	124869801	124871450	+	0	NA	intron (NM_030978, intron 3 of 5)	intron (NM_030978, intron 3 of 5)	8495	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
184481	chr5	100837971	100838530	+	0	NA	intron (NM_005668, intron 4 of 4)	MER102b|DNA|hAT-Charlie	-21685	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
115388	chr19	15258921	15259180	+	0	NA	intron (NM_001379291, intron 7 of 19)	intron (NM_001379291, intron 7 of 19)	21401	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
166173	chr3	111672271	111672900	+	0	NA	Intergenic	Intergenic	-2091	NM_153268	257068		NM_153268	ENSG00000240891	PLCXD2	-	phosphatidylinositol specific phospholipase C X domain containing 2	protein-coding
131530	chr2	96594201	96595150	+	0	NA	non-coding (NR_047656, exon 20 of 20)	non-coding (NR_047656, exon 20 of 20)	43316	NR_047658	55683		NM_017991	ENSG00000114982	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
226079	chr9	62629471	62629630	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	96988	NR_147619	103908604		NR_147619		FAM88F	-	family with sequence similarity 88 member F	ncRNA
157485	chr22	45312551	45313350	+	0	NA	intron (NM_001349915, intron 1 of 7)	MER21B|LTR|ERVL	3016	NM_017911	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
68590	chr14	89504621	89505280	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	-71266	NR_024620	29018		NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
73928	chr15	50906701	50907900	+	0	NA	Intergenic	LTR43B|LTR|ERV1	-1383	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
179994	chr5	912001	913010	+	0	NA	intron (NM_004237, intron 10 of 12)	CpG	19621	NM_004237	9319		NM_004237	ENSG00000071539	TRIP13	16E1BP|MVA3|OOMD9|OZEMA9	thyroid hormone receptor interactor 13	protein-coding
223017	chr8	143290801	143291830	+	0	NA	promoter-TSS (NM_030895)	promoter-TSS (NM_030895)	-102	NM_030895	79943		NM_030895	ENSG00000185730	ZNF696	-	zinc finger protein 696	protein-coding
143246	chr20	25050851	25051150	+	0	NA	intron (NM_001252675, intron 1 of 13)	intron (NM_001252675, intron 1 of 13)	7139	NM_032501	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
30094	chr10	73940451	73941430	+	0	NA	Intergenic	Intergenic	-18163	NR_160938	414236		NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 putative open reading frame 55	ncRNA
99572	chr17	50476071	50476230	+	0	NA	Intergenic	CpG	-2650	NR_130911	55316		NM_018346	ENSG00000136444	RSAD1	HemW	radical S-adenosyl methionine domain containing 1	protein-coding
109979	chr19	1402471	1404380	+	0	NA	Intergenic	Intergenic	-1883	NM_000156	2593		NM_000156	ENSG00000130005	GAMT	CCDS2|HEL-S-20|PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
56177	chr12	111425671	111425900	+	0	NA	intron (NM_005475, intron 2 of 7)	intron (NM_005475, intron 2 of 7)	-9077	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
15962	chr1	151848471	151849280	+	0	NA	intron (NM_182578, intron 3 of 5)	intron (NM_182578, intron 3 of 5)	4837	NM_182578	284486		NM_182578	ENSG00000196407	THEM5	ACOT15	thioesterase superfamily member 5	protein-coding
53913	chr12	71657621	71657880	+	0	NA	intron (NM_144982, intron 1 of 34)	AluSz|SINE|Alu	6098	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
64254	chr14	23179321	23179980	+	0	NA	intron (NM_012244, intron 1 of 10)	AluJr|SINE|Alu	4010	NM_012244	23428		NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
161655	chr3	43325001	43325600	+	0	NA	intron (NM_017719, intron 3 of 6)	AluYk4|SINE|Alu	26662	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
216708	chr8	22243151	22243400	+	0	NA	Intergenic	L1MD1|LINE|L1	1762	NR_029714	407037		NR_029714	ENSG00000208037	MIR320A	MIRN320|MIRN320A|hsa-mir-320a|mir-320a	microRNA 320a	ncRNA
33140	chr10	112379421	112379830	+	0	NA	intron (NM_016234, intron 1 of 20)	MIRb|SINE|MIR	3427	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
168458	chr3	143003751	143004050	+	0	NA	intron (NM_001080415, intron 1 of 27)	AluSx3|SINE|Alu	2330	NM_001320222	23350		NM_001080415	ENSG00000163714	U2SURP	SR140|fSAPa	U2 snRNP associated SURP domain containing	protein-coding
123214	chr19	52777821	52778080	+	0	NA	intron (NM_001321867, intron 2 of 3)	AluJo|SINE|Alu	8841	NM_198457	162966		NM_198457	ENSG00000189190	ZNF600	KR-ZNF1	zinc finger protein 600	protein-coding
17419	chr1	156651051	156651550	+	0	NA	intron (NM_198427, intron 6 of 7)	L2a|LINE|L2	9183	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
126972	chr2	36333601	36333830	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	21855	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
153025	chr22	23236471	23236850	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-26107	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
234	chr1	890451	890750	+	0	NA	Intergenic	Intergenic	-13798	NR_027055	284593		NR_027055	ENSG00000230368	FAM41C	-	family with sequence similarity 41 member C	ncRNA
64432	chr14	24193771	24194130	+	0	NA	intron (NM_001289006, intron 2 of 5).2	AluYk11|SINE|Alu	1491	NM_006405	10548		NM_006405	ENSG00000100926	TM9SF1	HMP70|MP70	transmembrane 9 superfamily member 1	protein-coding
55594	chr12	106747601	106749200	+	0	NA	intron (NM_213594, intron 16 of 17)	Charlie23a|DNA|hAT-Charlie	-26282	NM_001351363	55188		NM_018157	ENSG00000111785	RIC8B	RIC8|hSyn	RIC8 guanine nucleotide exchange factor B	protein-coding
107335	chr18	45691221	45691700	+	0	NA	Intergenic	Intergenic	-32721	NM_001308278	6563		NM_015865	ENSG00000141469	SLC14A1	HUT11|HUT11A|HsT1341|JK|Jk(a)|Jk(b)|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 member 1 (Kidd blood group)	protein-coding
182992	chr5	72232321	72233230	+	0	NA	intron (NM_001286751, intron 6 of 10)	intron (NM_001286751, intron 6 of 10)	52988	NM_001324255	4131		NM_005909	ENSG00000131711	MAP1B	DFNA83|FUTSCH|MAP5|PPP1R102|PVNH9	microtubule associated protein 1B	protein-coding
119795	chr19	41326021	41326780	+	0	NA	Intergenic	Intergenic	15923	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
159715	chr3	15713551	15713650	+	0	NA	TTS (NM_001370753)	TTS (NM_001370753)	-16229	NR_036085	100422990		NR_036085	ENSG00000264354	MIR3134	-	microRNA 3134	ncRNA
43955	chr11	93717921	93718600	+	0	NA	intron (NM_033395, intron 18 of 29)	intron (NM_033395, intron 18 of 29)	-3254	NR_002569	619383		NR_002569	ENSG00000254911	SCARNA9	Z32|mgU2-19/30	small Cajal body-specific RNA 9	ncRNA
66716	chr14	64430021	64430500	+	0	NA	intron (NM_001364837, intron 13 of 26)	intron (NM_001364837, intron 13 of 26)	-35239	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
161905	chr3	45977701	45977930	+	0	NA	intron (NM_024513, intron 4 of 17)	intron (NM_024513, intron 4 of 17)	18009	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
223230	chr8	143608601	143610500	+	0	NA	promoter-TSS (NR_138144).2	promoter-TSS (NR_138144).2	25	NM_001329866	65263		NM_023078	ENSG00000104524	PYCR3	PYCRL	pyrroline-5-carboxylate reductase 3	protein-coding
6703	chr1	29183901	29184100	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2100	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
201815	chr6	150016551	150017270	+	0	NA	Intergenic	Intergenic	8622	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
218652	chr8	57211751	57212050	+	0	NA	Intergenic	MER50|LTR|ERV1	-6376	NR_038235	100507651		NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
202604	chr6	158717151	158718230	+	0	NA	intron (NM_001318745, intron 6 of 14)	intron (NM_001318745, intron 6 of 14)	47063	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
211203	chr7	102618371	102618800	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1827	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
149686	chr21	33935071	33935430	+	0	NA	intron (NR_038883, intron 1 of 2)	L1MA9|LINE|L1	4036	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
232561	chr9	136359801	136360450	+	0	NA	TTS (NM_001145638)	TTS (NM_001145638)	3619	NM_001080849	728489		NM_001080849	ENSG00000213221	DNLZ	C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2	DNL-type zinc finger	protein-coding
203362	chr6	170376951	170377750	+	0	NA	intron (NM_032448, intron 6 of 10)	CpG	46589	NR_039787	100616430		NR_039787	ENSG00000266245	MIR4644	-	microRNA 4644	ncRNA
95500	chr17	36333801	36334300	+	0	NA	exon (NM_001291462, exon 14 of 14).8	exon (NM_001291462, exon 14 of 14).8	10166	NM_001291462	101060321		NM_001291462	ENSG00000260287	TBC1D3G	TBC1D3C|TBC1D3D	TBC1 domain family member 3G	protein-coding
128778	chr2	62219201	62220200	+	0	NA	intron (NM_001319075, intron 1 of 1)	intron (NM_001319075, intron 1 of 1)	4179	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
73364	chr15	42488451	42488550	+	0	NA	intron (NM_001381994, intron 1 of 20)	intron (NM_001381994, intron 1 of 20)	2641	NM_001381998	64397		NM_022473	ENSG00000103994	ZNF106	SH3BP3|ZFP106|ZNF474	zinc finger protein 106	protein-coding
52145	chr12	54250571	54250950	+	0	NA	intron (NM_012117, intron 3 of 4)	AluYb8|SINE|Alu	8785	NM_001127322	23468		NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A|HP1alpha	chromobox 5	protein-coding
59397	chr13	25114171	25114430	+	0	NA	Intergenic	Intergenic	18164	NM_030979	5042		NM_030979	ENSG00000151846	PABPC3	PABP3|PABPL3|tPABP	poly(A) binding protein cytoplasmic 3	protein-coding
189515	chr5	173573021	173573300	+	0	NA	Intergenic	Intergenic	-6474	NR_027109	285593		NR_027108	ENSG00000253955	LINC02995	-	long intergenic non-protein coding RNA 2995	ncRNA
224750	chr9	21812501	21813410	+	0	NA	intron (NM_002451, intron 1 of 7)	MIR|SINE|MIR	10319	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
37832	chr11	33255801	33256180	+	0	NA	promoter-TSS (NM_001278163)	promoter-TSS (NM_001278163)	-682	NM_001278163	10114		NM_005734	ENSG00000110422	HIPK3	DYRK6|FIST3|PKY|YAK1	homeodomain interacting protein kinase 3	protein-coding
132252	chr2	102472921	102473200	+	0	NA	promoter-TSS (NM_001011552)	promoter-TSS (NM_001011552)	-166	NM_001011552	389015		NM_001011552	ENSG00000180251	SLC9A4	NHE4	solute carrier family 9 member A4	protein-coding
58088	chr12	124608651	124609950	+	0	NA	Intergenic	Intergenic	-41688	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
114787	chr19	13773801	13775550	+	0	NA	TTS (NM_001329572)	TTS (NM_001329572)	219	NM_014047	28974		NM_014047	ENSG00000104979	C19orf53	HSPC023|L10K|LYDG10	chromosome 19 open reading frame 53	protein-coding
230716	chr9	128807621	128807880	+	0	NA	intron (NM_018201, intron 11 of 11)	intron (NM_018201, intron 11 of 11)	-10750	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
208885	chr7	73838471	73838830	+	0	NA	intron (NM_152559, intron 5 of 5)	intron (NM_152559, intron 5 of 5)	3866	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
84706	chr16	30816351	30817280	+	0	NA	Intergenic	L1MD|LINE|L1	-29610	NM_001345970	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
202954	chr6	161111101	161111880	+	0	NA	intron (NM_006724, intron 22 of 25)	intron (NM_006724, intron 22 of 25)	50492	NR_024277	79992		NM_024929		AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1	ncRNA
173336	chr4	7668471	7668630	+	0	NA	intron (NM_020777, intron 8 of 26)	intron (NM_020777, intron 8 of 26)	-85540	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
218902	chr8	60699021	60699280	+	0	NA	intron (NM_017780, intron 1 of 37)	intron (NM_017780, intron 1 of 37)	20410	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
193705	chr6	31139021	31139480	+	0	NA	promoter-TSS (NM_014069)	promoter-TSS (NM_014069)	-184	NM_014069	170680		NM_014069	ENSG00000204538	PSORS1C2	C6orf17|SPR1	psoriasis susceptibility 1 candidate 2	protein-coding
141299	chr2	240433421	240433680	+	0	NA	Intergenic	Intergenic	-2113	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
8769	chr1	42763971	42765000	+	0	NA	intron (NM_001146289, intron 1 of 14)	MIRb|SINE|MIR	2543	NM_022356	64175		NM_022356	ENSG00000117385	P3H1	GROS1|LEPRE1|OI8	prolyl 3-hydroxylase 1	protein-coding
215218	chr7	156091451	156091750	+	0	NA	Intergenic	L1MB8|LINE|L1	129043	NR_168379	389602		NM_001291913	ENSG00000204876	LOC389602	-	uncharacterized LOC389602	ncRNA
14577	chr1	145171721	145171980	+	0	NA	intron (NR_156690, intron 1 of 3)	AluSz|SINE|Alu	-4243	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
49986	chr12	42143821	42145430	+	0	NA	exon (NM_001099650, exon 1 of 7)	exon (NM_001099650, exon 1 of 7)	249	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
238584	chrX	153884471	153885000	+	0	NA	intron (NR_130768, intron 3 of 6)	intron (NR_130768, intron 3 of 6)	1438	NM_001278116	3897		NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|HYCX|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
223384	chr8	143909821	143910080	+	0	NA	Intergenic	L1MEd|LINE|L1	29647	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
101583	chr17	68070501	68071030	+	0	NA	Intergenic	Intergenic	-30790	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
142975	chr20	20014801	20015200	+	0	NA	Intergenic	Intergenic	-2290	NM_181528	51126		NM_016100	ENSG00000173418	NAA20	MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein-coding
117666	chr19	24036721	24037430	+	0	NA	intron (NM_001278677, intron 1 of 5)	intron (NM_001278677, intron 1 of 5)	3626	NM_001278663	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
202703	chr6	158815171	158815580	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-2604	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
36162	chr11	3153401	3153600	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	11810	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
100686	chr17	63820951	63822380	+	0	NA	intron (NM_017647, intron 15 of 20)	intron (NM_017647, intron 15 of 20)	-5766	NM_002805	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
217160	chr8	26288401	26288930	+	0	NA	Intergenic	AluSp|SINE|Alu	-2843	NM_002717	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
74481	chr15	59993921	59994350	+	0	NA	Intergenic	Intergenic	-10176	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
154699	chr22	36402401	36403000	+	0	NA	Intergenic	AluSq|SINE|Alu	-14733	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
114619	chr19	12976801	12977000	+	0	NA	Intergenic	AluSx|SINE|Alu	7282	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
200180	chr6	130766671	130766830	+	0	NA	Intergenic	Intergenic	-60656	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
54270	chr12	88227371	88227550	+	0	NA	Intergenic	MER48|LTR|ERV1	85153	NM_181783	160418		NM_181783	ENSG00000139324	TMTC3	LIS8|SMILE	transmembrane O-mannosyltransferase targeting cadherins 3	protein-coding
108513	chr18	74205721	74206000	+	0	NA	Intergenic	MER4A1|LTR|ERV1	57337	NM_014177	29090		NM_014177	ENSG00000075336	TIMM21	C18orf55|HSPC154|TIM21	translocase of inner mitochondrial membrane 21	protein-coding
127443	chr2	42180321	42180830	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-10344	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226373	chr9	70261171	70261330	+	0	NA	intron (NM_015110, intron 1 of 24)	L2|LINE|L2	2272	NM_015110	23137		NM_015110	ENSG00000198887	SMC5	ATELS2|SMC5L1	structural maintenance of chromosomes 5	protein-coding
35305	chr11	1026021	1026880	+	0	NA	exon (NM_005961, exon 20 of 33)	exon (NM_005961, exon 20 of 33)	10268	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
71533	chr14	106196421	106196750	+	0	NA	Intergenic	Intergenic	-91089	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
190062	chr5	177598271	177598630	+	0	NA	Intergenic	Intergenic	-1682	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
50809	chr12	49069521	49071000	+	0	NA	promoter-TSS (NM_001303126)	promoter-TSS (NM_001303126)	-281	NR_130123	121268		NM_144593	ENSG00000167550	RHEBL1	RHEBL1c	RHEB like 1	protein-coding
179129	chr4	169008571	169008730	+	0	NA	intron (NM_032783, intron 1 of 4)	intron (NM_032783, intron 1 of 4)	1605	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
81908	chr16	11734301	11734780	+	0	NA	intron (NR_136674, intron 2 of 8)	intron (NR_136674, intron 2 of 8)	8317	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
231514	chr9	131414621	131415230	+	0	NA	intron (NM_013318, intron 1 of 31)	HAL1|LINE|L1	20839	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
138928	chr2	218224251	218224850	+	0	NA	intron (NM_152862, intron 2 of 10)	intron (NM_152862, intron 2 of 10)	7153	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
61447	chr13	51953401	51953800	+	0	NA	intron (NM_001330579, intron 7 of 18)	intron (NM_001330579, intron 7 of 18)	57850	NM_000053	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
72505	chr15	33148251	33148650	+	0	NA	intron (NM_001277313, intron 4 of 20)	LTR33|LTR|ERVL	46264	NM_001277313	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
94528	chr17	29570751	29571050	+	0	NA	intron (NM_001346079, intron 3 of 5)	intron (NM_001346079, intron 3 of 5)	2199	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
13882	chr1	119021051	119021150	+	0	NA	Intergenic	L1PA3|LINE|L1	-19695	NR_135035	105378933		NR_135034	ENSG00000226172	LOC105378933	-	uncharacterized LOC105378933	ncRNA
139238	chr2	219331051	219331150	+	0	NA	intron (NM_001007089, intron 2 of 6)	intron (NM_001007089, intron 2 of 6)	2077	NM_001007089	389075		NM_001007089	ENSG00000182698	RESP18	-	regulated endocrine specific protein 18	protein-coding
171471	chr3	196456271	196456630	+	0	NA	Intergenic	AluSp|SINE|Alu	-24023	NM_015562	26043		NM_015562	ENSG00000163960	UBXN7	UBXD7	UBX domain protein 7	protein-coding
38476	chr11	45834001	45834600	+	0	NA	Intergenic	Intergenic	-12818	NM_001127457	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
118009	chr19	34134121	34135750	+	0	NA	Intergenic	MIRb|SINE|MIR	-37569	NR_169265	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
155565	chr22	38730301	38731200	+	0	NA	3' UTR (NM_004286, exon 12 of 12)	3' UTR (NM_004286, exon 12 of 12)	24716	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
19009	chr1	169602321	169602730	+	0	NA	intron (NM_003005, intron 10 of 16)	MIRc|SINE|MIR	-16044	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
197984	chr6	90044601	90045300	+	0	NA	intron (NM_021813, intron 5 of 8)	L2a|LINE|L2	150481	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
225720	chr9	36855371	36855730	+	0	NA	intron (NM_001280549, intron 6 of 7)	intron (NM_001280549, intron 6 of 7)	8758	NR_039766	100616278		NR_039766	ENSG00000264922	MIR4540	-	microRNA 4540	ncRNA
9342	chr1	46667551	46669650	+	0	NA	promoter-TSS (NM_001042546)	promoter-TSS (NM_001042546)	-157	NM_022745	64756		NM_022745	ENSG00000123472	ATPAF1	ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding
185839	chr5	132470271	132470800	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	20238	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
51446	chr12	52043251	52043550	+	0	NA	intron (NM_001202233, intron 2 of 7)	intron (NM_001202233, intron 2 of 7)	5685	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
54471	chr12	92011121	92011580	+	0	NA	intron (NR_132341, intron 1 of 4)	L2c|LINE|L2	130363	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
211760	chr7	107203671	107204500	+	0	NA	intron (NM_001379513, intron 19 of 19)	intron (NM_001379513, intron 19 of 19)	35082	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
112959	chr19	7822101	7822500	+	0	NA	Intergenic	AluSq4|SINE|Alu	-7918	NM_001159944	115704		NM_145245	ENSG00000142459	EVI5L	-	ecotropic viral integration site 5 like	protein-coding
79707	chr16	1306721	1307550	+	0	NA	Intergenic	AluSz|SINE|Alu	-2017	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
47611	chr12	5988621	5988990	+	0	NA	intron (NM_000552, intron 38 of 51)	intron (NM_000552, intron 38 of 51)	-42573	NM_001278597	57101		NM_020373	ENSG00000047617	ANO2	C12orf3|TMEM16B	anoctamin 2	protein-coding
134784	chr2	147648571	147648730	+	0	NA	Intergenic	Intergenic	-195867	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
238209	chrX	138778751	138778930	+	0	NA	intron (NM_001139498, intron 2 of 5)	L1PA3|LINE|L1	-39487	NM_033642	2258		NM_004114	ENSG00000129682	FGF13	DEE90|FGF-13|FGF2|FHF-2|FHF2|LINC00889|XLID110	fibroblast growth factor 13	protein-coding
26746	chr10	22698951	22699050	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	15108	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
50269	chr12	46302971	46303550	+	0	NA	Intergenic	Intergenic	-34217	NM_001278388	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
108207	chr18	63137921	63139030	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	181294	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
182437	chr5	62291351	62292240	+	0	NA	Intergenic	L1P1|LINE|L1	-14367	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
219038	chr8	65706001	65706300	+	0	NA	intron (NM_014637, intron 5 of 7)	intron (NM_014637, intron 5 of 7)	36277	NM_001145838	9650		NM_014637	ENSG00000066855	MTFR1	CHPPR|FAM54A2	mitochondrial fission regulator 1	protein-coding
98729	chr17	48020901	48021430	+	0	NA	Intergenic	MIR|SINE|MIR	-11717	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
167278	chr3	128624671	128624830	+	0	NA	intron (NM_002950, intron 8 of 9)	AluSc|SINE|Alu	26068	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
136486	chr2	177224471	177224980	+	0	NA	TTS (NM_001330247)	TTS (NM_001330247)	11931	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
74280	chr15	57591521	57592100	+	0	NA	promoter-TSS (NM_001018090)	promoter-TSS (NM_001018090)	-94	NM_001018091	145781		NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GCOM1, MYZAP-POLR2M combined locus	protein-coding
112609	chr19	6740851	6741700	+	0	NA	exon (NM_004240, exon 3 of 14)	exon (NM_004240, exon 3 of 14)	1595	NM_001288963	9322		NM_004240	ENSG00000125733	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
211491	chr7	105209271	105209430	+	0	NA	intron (NM_001350741, intron 2 of 16)	AluJo|SINE|Alu	59727	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
96308	chr17	39962371	39963330	+	0	NA	promoter-TSS (NM_178171)	promoter-TSS (NM_178171)	-154	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
229358	chr9	120933371	120933830	+	0	NA	Intergenic	Intergenic	-4427	NM_001190945	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
204713	chr7	5538401	5539680	+	0	NA	Intergenic	Intergenic	-8439	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
133350	chr2	113945201	113945400	+	0	NA	intron (NM_005721, intron 8 of 11)	HAL1|LINE|L1	-24022	NR_148507	440900		NR_034128	ENSG00000234199	LINC01191	VIN|lnc-ACTR3	long intergenic non-protein coding RNA 1191	ncRNA
128550	chr2	60879471	60879630	+	0	NA	intron (NR_033980, intron 1 of 2)	L2c|LINE|L2	1764	NR_033980	400957		NR_033980	ENSG00000228414	REL-DT	LINC01185	REL divergent transcript	ncRNA
208004	chr7	55536671	55537900	+	0	NA	intron (NM_001321243, intron 1 of 5)	intron (NM_001321243, intron 1 of 5)	409	NM_001321242	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
126876	chr2	32062721	32064380	+	0	NA	promoter-TSS (NM_001363823)	promoter-TSS (NM_001363823)	-6	NM_199436	6683		NM_014946	ENSG00000021574	SPAST	ADPSP|FSP2|SPG4	spastin	protein-coding
134683	chr2	144479401	144479800	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-40014	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
212052	chr7	114970051	114971180	+	0	NA	intron (NM_199072, intron 3 of 4)	intron (NM_199072, intron 3 of 4)	48461	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
6189	chr1	27444151	27444750	+	0	NA	intron (NM_006990, intron 1 of 8)	MIRb|SINE|MIR	45717	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
224578	chr9	20043001	20043800	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-254363	NM_001193288	25769		NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
56925	chr12	120448171	120448730	+	0	NA	intron (NM_176818, intron 2 of 3)	AluSx1|SINE|Alu	2006	NR_033684	283459		NM_176818	ENSG00000257218	GATC	15E1.2|COXPD42	glutamyl-tRNA amidotransferase subunit C	protein-coding
202260	chr6	156983201	156983600	+	0	NA	intron (NM_001371656, intron 6 of 20)	AluSg4|SINE|Alu	-53027	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
131003	chr2	87810851	87811630	+	0	NA	intron (NM_001382344, intron 6 of 22).2	intron (NM_001382344, intron 6 of 22).2	14527	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
211517	chr7	105306321	105306600	+	0	NA	intron (NM_001350742, intron 2 of 16)	intron (NM_001350742, intron 2 of 16)	-7681	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
82996	chr16	22162071	22162880	+	0	NA	promoter-TSS (NM_001365288)	promoter-TSS (NM_001365288)	-56	NM_001365288	100288072		NM_001365288	ENSG00000183921	SDR42E2	-	short chain dehydrogenase/reductase family 42E, member 2	protein-coding
178429	chr4	147792271	147793050	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	10065	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
155472	chr22	38489751	38491100	+	0	NA	intron (NM_006386, intron 11 of 12)	intron (NM_006386, intron 11 of 12)	15886	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
182896	chr5	70071201	70071400	+	0	NA	intron (NM_022875, intron 7 of 7)	AluY|SINE|Alu	21631	NM_000344	6606		NM_000344	ENSG00000172062	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
28370	chr10	47257621	47258300	+	0	NA	Intergenic	L1ME3G|LINE|L1	-42237	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
31092	chr10	89250101	89250300	+	0	NA	intron (NM_000235, intron 1 of 9)	AluY|SINE|Alu	1575	NM_000235	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
208331	chr7	66207501	66207700	+	0	NA	intron (NM_003596, intron 1 of 5)	L2c|LINE|L2	2266	NM_003596	8460		NM_003596	ENSG00000169902	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
52644	chr12	56287101	56287600	+	0	NA	intron (NM_004077, intron 1 of 10)	AluSx1|SINE|Alu	12980	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
222332	chr8	133525201	133525630	+	0	NA	intron (NM_173344, intron 2 of 9)	MER52A|LTR|ERV1	46472	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
150538	chr21	42981871	42982430	+	0	NA	intron (NM_001320694, intron 1 of 10)	intron (NM_001320694, intron 1 of 10)	7588	NM_004571	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
204614	chr7	5365871	5366530	+	0	NA	intron (NM_001080495, intron 11 of 29)	MER20|DNA|hAT-Charlie	57346	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
235970	chrX	53683401	53684980	+	0	NA	intron (NM_031407, intron 2 of 83)	CpG	2529	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
69396	chr14	94045371	94045530	+	0	NA	intron (NM_023112, intron 5 of 5)	intron (NM_023112, intron 5 of 5)	19110	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
135018	chr2	154697571	154697930	+	0	NA	promoter-TSS (NM_001260510)	promoter-TSS (NM_001260510)	-831	NM_001260508	3760		NM_002239	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	potassium inwardly rectifying channel subfamily J member 3	protein-coding
96742	chr17	41686421	41686980	+	0	NA	Intergenic	AluJo|SINE|Alu	-2185	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
72402	chr15	31397001	31397630	+	0	NA	intron (NM_001302461, intron 1 of 1).3	CpG	70480	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
78078	chr15	90221121	90221780	+	0	NA	exon (NM_001324030, exon 6 of 14)	exon (NM_001324030, exon 6 of 14)	12491	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
20339	chr1	197776201	197777400	+	0	NA	Intergenic	Intergenic	-1320	NM_001195215	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
29951	chr10	73485951	73486050	+	0	NA	intron (NM_001289969, intron 1 of 12)	AluSg|SINE|Alu	-9752	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
218587	chr8	55864221	55864880	+	0	NA	Intergenic	Intergenic	-15285	NM_002350	4067		NM_002350	ENSG00000254087	LYN	JTK8|SAIDV|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
189386	chr5	172720001	172720200	+	0	NA	Intergenic	L2c|LINE|L2	-35403	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
68462	chr14	85937621	85938080	+	0	NA	intron (NR_110155, intron 1 of 3)	LTR8|LTR|ERV1	3172	NR_110155	101928767		NR_110155	ENSG00000258733	LINC02328	-	long intergenic non-protein coding RNA 2328	ncRNA
110861	chr19	2615021	2615280	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-15565	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
76187	chr15	73305921	73306180	+	0	NA	TTS (NM_002499)	TTS (NM_002499)	6140	NR_162148	113219462		NR_162148		MIR12135	-	microRNA 12135	ncRNA
56717	chr12	120102851	120103180	+	0	NA	intron (NM_006861, intron 3 of 5)	intron (NM_006861, intron 3 of 5)	13738	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
162132	chr3	46945971	46946130	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	30451	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
107881	chr18	56637601	56639060	+	0	NA	intron (NM_004786, intron 1 of 7)	CpG	262	NR_024546	9352		NM_004786	ENSG00000091164	TXNL1	HEL-S-114|TRP32|TXL-1|TXNL|Txl	thioredoxin like 1	protein-coding
174162	chr4	36268201	36268400	+	0	NA	intron (NR_122080, intron 2 of 2)	L2a|LINE|L2	11782	NR_122080	439933		NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
218806	chr8	59058451	59058930	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	60457	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
131309	chr2	96118501	96118850	+	0	NA	Intergenic	Intergenic	-2104	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
201307	chr6	144353721	144355150	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	-51220	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
18296	chr1	161151021	161151680	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2628	NM_016406	51506		NM_016406	ENSG00000143222	UFC1	HSPC155|NEDSG	ubiquitin-fold modifier conjugating enzyme 1	protein-coding
69851	chr14	99256771	99257000	+	0	NA	intron (NM_001282237, intron 2 of 3)	MIR3|SINE|MIR	15312	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
170754	chr3	188398521	188398780	+	0	NA	intron (NM_001167671, intron 3 of 11)	intron (NM_001167671, intron 3 of 11)	170016	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
166645	chr3	119809171	119809330	+	0	NA	intron (NM_003889, intron 2 of 8)	intron (NM_003889, intron 2 of 8)	26540	NM_022002	8856		NM_003889	ENSG00000144852	NR1I2	BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR	nuclear receptor subfamily 1 group I member 2	protein-coding
182868	chr5	69839971	69840330	+	0	NA	Intergenic	Intergenic	-4519	NR_146391	653080		NR_146391		GUSBP16	-	GUSB pseudogene 16	pseudo
75058	chr15	64209651	64209950	+	0	NA	intron (NM_001329607, intron 6 of 11)	intron (NM_001329607, intron 6 of 11)	-46778	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
2199	chr1	8651271	8652000	+	0	NA	intron (NM_012102, intron 3 of 23)	AluJb|SINE|Alu	-156722	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
193442	chr6	30486701	30487100	+	0	NA	Intergenic	Intergenic	-2609	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
66176	chr14	60651071	60651630	+	0	NA	Intergenic	Intergenic	-1873	NM_005982	6495		NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
21417	chr1	205313071	205314230	+	0	NA	intron (NM_030952, intron 1 of 6)	MIR3|SINE|MIR	8095	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
112731	chr19	7340601	7341600	+	0	NA	Intergenic	Intergenic	-7837	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
83931	chr16	29078021	29078530	+	0	NA	intron (NR_003369, intron 3 of 16)	MER20|DNA|hAT-Charlie	3433	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
180738	chr5	31866221	31866480	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	69809	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
69158	chr14	92583121	92583800	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	7226	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
204136	chr7	2353521	2354300	+	0	NA	promoter-TSS (NM_001362792)	promoter-TSS (NM_001362792)	-176	NM_001362792	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
155104	chr22	37603851	37604150	+	0	NA	Intergenic	Intergenic	-4474	NM_001172687	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
25350	chr10	6299751	6300650	+	0	NA	Intergenic	Intergenic	-26344	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
164854	chr3	71054621	71055080	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	10074	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
5521	chr1	25798021	25798500	+	0	NA	Intergenic	Intergenic	-1933	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
104630	chr17	81435651	81436150	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	15288	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
170653	chr3	187137201	187137600	+	0	NA	intron (NM_052969, intron 1 of 2)	AluSx|SINE|Alu	2096	NM_052969	116832		NM_052969	ENSG00000163923	RPL39L	L39-2|RPL39L1	ribosomal protein L39 like	protein-coding
99323	chr17	49836851	49837350	+	0	NA	Intergenic	Intergenic	-8786	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
93795	chr17	20466201	20466400	+	0	NA	intron (NM_001042685, intron 1 of 10)	intron (NM_001042685, intron 1 of 10)	1235	NM_001367292	284194		NM_001042685	ENSG00000170298	LGALS9B	-	galectin 9B	protein-coding
229671	chr9	124420951	124421250	+	0	NA	Intergenic	Intergenic	-5658	NM_002799	5695		NM_002799	ENSG00000136930	PSMB7	-	proteasome 20S subunit beta 7	protein-coding
122933	chr19	50678771	50679630	+	0	NA	intron (NM_016148, intron 21 of 23)	intron (NM_016148, intron 21 of 23)	29755	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
110955	chr19	2900001	2901800	+	0	NA	promoter-TSS (NM_173480)	promoter-TSS (NM_173480)	-28	NM_173480	126295		NM_173480	ENSG00000171970	ZNF57	ZNF424	zinc finger protein 57	protein-coding
141434	chr2	241003371	241004150	+	0	NA	intron (NM_001080437, intron 1 of 31)	intron (NM_001080437, intron 1 of 31)	5142	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
99475	chr17	50166471	50166980	+	0	NA	intron (NM_001135697, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	720	NM_001135697	6442		NM_000023	ENSG00000108823	SGCA	50DAG|ADL|DAG2|DMDA2|LGMD2D|LGMDR3|SCARMD1|adhalin	sarcoglycan alpha	protein-coding
171556	chr3	196891471	196891630	+	0	NA	intron (NM_001308045, intron 2 of 8)	AluJr|SINE|Alu	23630	NM_152699	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
45025	chr11	117024071	117024230	+	0	NA	intron (NM_001281748, intron 1 of 24)	LTR48B|LTR|ERV1	74278	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
169158	chr3	156554651	156555580	+	0	NA	promoter-TSS (NM_001308197)	promoter-TSS (NM_001308197)	2	NM_007107	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
93760	chr17	19993821	19994250	+	0	NA	Intergenic	AluY|SINE|Alu	-15324	NM_001243439	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
170903	chr3	194003251	194003580	+	0	NA	intron (NR_033944, intron 1 of 2)	CpG	244	NR_033944	647323		NR_033944	ENSG00000214146	LINC02026	-	long intergenic non-protein coding RNA 2026	ncRNA
53843	chr12	69588871	69589900	+	0	NA	intron (NM_006431, intron 6 of 15)	intron (NM_006431, intron 6 of 15)	3496	NM_001198842	10576		NM_006431	ENSG00000166226	CCT2	99D8.1|CCT-beta|CCTB|HEL-S-100n|PRO1633|TCP-1-beta	chaperonin containing TCP1 subunit 2	protein-coding
101231	chr17	66165371	66165730	+	0	NA	intron (NM_001353127, intron 4 of 26)	intron (NM_001353127, intron 4 of 26)	26342	NM_001302891	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
185765	chr5	132279321	132279580	+	0	NA	Intergenic	Intergenic	-14944	NM_003059	6583		NM_003059	ENSG00000197208	SLC22A4	DFNB60|ETTh|OCTN1	solute carrier family 22 member 4	protein-coding
219974	chr8	89765501	89766180	+	0	NA	intron (NM_001375360, intron 2 of 9)	L1MD1|LINE|L1	8024	NM_003821	8767		NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor interacting serine/threonine kinase 2	protein-coding
165046	chr3	71437351	71437850	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	104489	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
110605	chr19	2188071	2188430	+	0	NA	intron (NM_032482, intron 3 of 27)	intron (NM_032482, intron 3 of 27)	24317	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
64535	chr14	24438351	24438450	+	0	NA	3' UTR (NM_001290257, exon 8 of 8)	3' UTR (NM_001290257, exon 8 of 8)	4401	NM_020195	56948		NM_020195	ENSG00000100445	SDR39U1	C14orf124|HCDI	short chain dehydrogenase/reductase family 39U member 1	protein-coding
32704	chr10	104039821	104040080	+	0	NA	intron (NM_000494, intron 41 of 55)	intron (NM_000494, intron 41 of 55)	8236	NR_030760	100126326		NR_030760	ENSG00000283788	MIR936	MIRN936|hsa-mir-936	microRNA 936	ncRNA
153453	chr22	25178651	25179330	+	0	NA	intron (NM_001145206, intron 7 of 10)	CpG	-20868	NM_004076	1417		NM_004076	ENSG00000100053	CRYBB3	CATCN2|CRYB3|CTRCT22	crystallin beta B3	protein-coding
27608	chr10	32893421	32893880	+	0	NA	Intergenic	Intergenic	7822	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
19663	chr1	180515821	180516160	+	0	NA	Intergenic	Intergenic	-13413	NM_032360	84320		NM_032360	ENSG00000230124	ACBD6	NEDPM	acyl-CoA binding domain containing 6	protein-coding
88641	chr16	85637651	85637950	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	24478	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
75126	chr15	64564051	64564550	+	0	NA	intron (NM_015042, intron 2 of 9)	Tigger7|DNA|TcMar-Tigger	103722	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
38038	chr11	35153371	35153930	+	0	NA	intron (NM_001202557, intron 1 of 8)	L2a|LINE|L2	-9300	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
78103	chr15	90271351	90271850	+	0	NA	exon (NM_001033088, exon 3 of 3)	exon (NM_001033088, exon 3 of 3)	-5841	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
134298	chr2	135953221	135953550	+	0	NA	intron (NM_001293312, intron 3 of 14)	LTR107_Mam|LTR|LTR	-31791	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
89784	chr16	89480521	89481050	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	9776	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
157437	chr22	45228721	45229000	+	0	NA	intron (NM_001009880, intron 1 of 9)	intron (NM_001009880, intron 1 of 9)	12034	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
109842	chr19	1205071	1206540	+	0	NA	promoter-TSS (NM_000455)	promoter-TSS (NM_000455)	27	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
31322	chr10	92839121	92839630	+	0	NA	intron (NM_001013848, intron 2 of 22)	intron (NM_001013848, intron 2 of 22)	8267	NM_001319194	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
91221	chr17	3927551	3927880	+	0	NA	intron (NM_005173, intron 20 of 20)	intron (NM_005173, intron 20 of 20)	-11250	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
174078	chr4	27003471	27004280	+	0	NA	intron (NM_020860, intron 7 of 11)	MLT1D|LTR|ERVL-MaLR	143034	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
95229	chr17	35272921	35273180	+	0	NA	3' UTR (NM_001330183, exon 4 of 4)	3' UTR (NM_001330183, exon 4 of 4)	29978	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
223152	chr8	143524951	143525250	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	16347	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
118236	chr19	35210321	35211300	+	0	NA	Intergenic	MIR|SINE|MIR	17915	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
69026	chr14	91719901	91720100	+	0	NA	intron (NM_024764, intron 4 of 26).2	intron (NM_024764, intron 4 of 26).2	12086	NM_024764	79820		NM_024764	ENSG00000133962	CATSPERB	C14orf161|CatSper(beta)	cation channel sperm associated auxiliary subunit beta	protein-coding
159639	chr3	15305301	15305950	+	0	NA	intron (NM_001018009, intron 2 of 8)	L2b|LINE|L2	26961	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
119926	chr19	41774221	41775600	+	0	NA	Intergenic	LTR34|LTR|ERV1	19380	NM_002483	4680		NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA|NCA-50/90	CEA cell adhesion molecule 6	protein-coding
208468	chr7	66990421	66991150	+	0	NA	intron (NM_016038, intron 4 of 4)	AluY|SINE|Alu	4801	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
232636	chr9	136457901	136458100	+	0	NA	intron (NM_014866, intron 17 of 31)	AluJb|SINE|Alu	-18155	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
57882	chr12	123426771	123428800	+	0	NA	intron (NR_130703, intron 1 of 2)	AluSx|SINE|Alu	8948	NR_130703	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
201665	chr6	149500321	149500980	+	0	NA	Intergenic	AluY|SINE|Alu	-15636	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
126849	chr2	31523901	31524280	+	0	NA	3' UTR (NM_000348, exon 5 of 5)	3' UTR (NM_000348, exon 5 of 5)	56848	NM_000348	6716		NM_000348	ENSG00000277893	SRD5A2	-	steroid 5 alpha-reductase 2	protein-coding
40004	chr11	62644021	62644500	+	0	NA	intron (NM_198334, intron 1 of 23)	intron (NM_198334, intron 1 of 23)	2353	NM_001278192	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
92954	chr17	17041751	17043750	+	0	NA	5' UTR (NM_001364716, exon 1 of 24)	5' UTR (NM_001364716, exon 1 of 24)	293	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
132130	chr2	101703001	101704650	+	0	NA	intron (NM_001384572, intron 1 of 29)	AluSx4|SINE|Alu	5560	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
10827	chr1	77942171	77942730	+	0	NA	intron (NM_144573, intron 12 of 12)	intron (NM_144573, intron 12 of 12)	36622	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
201801	chr6	150001001	150002150	+	0	NA	non-coding (NR_024045, exon 2 of 4)	non-coding (NR_024045, exon 2 of 4)	3569	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
116188	chr19	17455701	17456600	+	0	NA	intron (NM_138454, intron 1 of 1)	L2a|LINE|L2	4776	NM_138454	115861		NM_138454	ENSG00000171773	NXNL1	RDCVF|TXNL6	nucleoredoxin like 1	protein-coding
110367	chr19	1904771	1906450	+	0	NA	intron (NM_001329539, intron 1 of 5)	CpG	211	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
165373	chr3	93869151	93869250	+	0	NA	Intergenic	AluY|SINE|Alu	104696	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
237389	chrX	119488371	119489000	+	0	NA	Intergenic	Intergenic	-19565	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
64114	chr14	22824551	22825750	+	0	NA	Intergenic	Intergenic	-4737	NM_001318870	122704		NM_178336	ENSG00000172590	MRPL52	mL52	mitochondrial ribosomal protein L52	protein-coding
860	chr1	1619401	1620300	+	0	NA	intron (NM_001170687, intron 2 of 19)	intron (NM_001170687, intron 2 of 19)	3995	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
107387	chr18	46071621	46072530	+	0	NA	intron (NM_024430, intron 1 of 14)	CpG	185	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
140842	chr2	237027171	237027530	+	0	NA	Intergenic	Intergenic	28817	NR_135202	93463		NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA
189501	chr5	173237301	173237700	+	0	NA	Intergenic	CpG	-2294	NM_004387	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
63205	chr13	113818321	113819230	+	0	NA	intron (NR_044995, intron 1 of 4)	intron (NR_044995, intron 1 of 4)	3165	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
90171	chr17	313071	313330	+	0	NA	intron (NM_006987, intron 5 of 9).2	L2b|LINE|L2	-18319	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
117816	chr19	29953521	29953980	+	0	NA	intron (NR_045557, intron 1 of 9)	Looper|DNA|PiggyBac	11511	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
199021	chr6	111157501	111157700	+	0	NA	intron (NM_018593, intron 1 of 5)	intron (NM_018593, intron 1 of 5)	43766	NR_145796	109623478		NR_145796		SNORD166	-	small nucleolar RNA, C/D box 166	snoRNA
157896	chr22	49755501	49756380	+	0	NA	Intergenic	MER66C|LTR|ERV1	68391	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
58543	chr12	132242171	132242450	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-33081	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
235699	chrX	48826171	48827280	+	0	NA	intron (NM_181532, intron 1 of 1)	CpG	212	NM_181532	3266		NM_181532	ENSG00000187682	ERAS	HRAS2|HRASP	ES cell expressed Ras	protein-coding
138765	chr2	215997771	215997930	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	15701	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
105697	chr18	2678921	2679800	+	0	NA	intron (NM_015295, intron 5 of 47)	AluYj4|SINE|Alu	23634	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
88010	chr16	81001051	81001350	+	0	NA	intron (NM_001351968, intron 1 of 4)	L1PA16|LINE|L1	-3524	NM_001351973	56942		NM_020188	ENSG00000103121	CMC2	2310061C15Rik|C16orf61|DC13	C-X9-C motif containing 2	protein-coding
114869	chr19	13870321	13870630	+	0	NA	intron (NR_146097, intron 1 of 1)	intron (NR_146097, intron 1 of 1)	-4224	NR_029613	406957		NR_029613	ENSG00000207613	MIR181C	MIRN181C|mir-181c	microRNA 181c	ncRNA
74466	chr15	59784171	59784400	+	0	NA	Intergenic	L1PB|LINE|L1	-94965	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
90878	chr17	2381151	2381850	+	0	NA	TTS (NM_001098509)	TTS (NM_001098509)	19560	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
49961	chr12	40224221	40225100	+	0	NA	promoter-TSS (NM_198578)	promoter-TSS (NM_198578)	-337	NM_198578	120892		NM_198578	ENSG00000188906	LRRK2	AURA17|DARDARIN|PARK8|RIPK7|ROCO2	leucine rich repeat kinase 2	protein-coding
193711	chr6	31175021	31175280	+	0	NA	intron (NR_152828, intron 2 of 4).6	intron (NR_152828, intron 2 of 4).6	-4468	NM_002701	5460		NM_002701	ENSG00000204531	POU5F1	OCT3|OCT4|OTF-3|OTF3|OTF4|Oct-3|Oct-4|Oct3/4	POU class 5 homeobox 1	protein-coding
207030	chr7	38660421	38660800	+	0	NA	Intergenic	AluJr|SINE|Alu	26479	NR_028347	340286		NM_001105282	ENSG00000164556	CFAP144P1	FAM183B|FAM183BP|THEG6	CFAP144 pseudogene 1	pseudo
76389	chr15	74619721	74620280	+	0	NA	intron (NM_001130028, intron 2 of 12)	intron (NM_001130028, intron 2 of 12)	4164	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
117531	chr19	20482771	20483030	+	0	NA	Intergenic	L1PA6|LINE|L1	-57935	NR_036455	664701		NM_001039884		ZNF826P	ZNF826	zinc finger protein 826, pseudogene	pseudo
44904	chr11	115194171	115194880	+	0	NA	intron (NM_001301043, intron 9 of 11)	intron (NM_001301043, intron 9 of 11)	-139052	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
114735	chr19	13209271	13210050	+	0	NA	intron (NM_023035, intron 44 of 46)	intron (NM_023035, intron 44 of 46)	59249	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
86104	chr16	57653471	57653630	+	0	NA	intron (NM_001370440, intron 5 of 14)	intron (NM_001370440, intron 5 of 14)	14058	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
149700	chr21	33985021	33985680	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	8968	NR_134561	101928126		NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
221056	chr8	116845051	116845350	+	0	NA	TTS (NM_006265)	TTS (NM_006265)	-29224	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
165079	chr3	71478471	71479030	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	63339	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
237083	chrX	103756851	103756950	+	0	NA	Intergenic	Intergenic	-19606	NM_001128834	5354		NM_000533	ENSG00000123560	PLP1	GPM6C|HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2	proteolipid protein 1	protein-coding
7818	chr1	36295671	36296100	+	0	NA	intron (NM_001321471, intron 9 of 12)	intron (NM_001321471, intron 9 of 12)	-10483	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
99093	chr17	49011101	49011300	+	0	NA	intron (NM_001160423, intron 2 of 12)	intron (NM_001160423, intron 2 of 12)	13815	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
208837	chr7	73694101	73694300	+	0	NA	intron (NR_045512, intron 9 of 10)	intron (NR_045512, intron 9 of 10)	10603	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
225173	chr9	33859671	33859980	+	0	NA	intron (NM_017811, intron 1 of 4)	AluJr|SINE|Alu	42665	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
47040	chr12	457621	457880	+	0	NA	Intergenic	Intergenic	-2189	NM_173593	283358		NM_173593	ENSG00000139044	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein-coding
5871	chr1	26752871	26753330	+	0	NA	intron (NM_139135, intron 4 of 19)	intron (NM_139135, intron 4 of 19)	-33954	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
71613	chr14	106666021	106666280	+	0	NA	Intergenic	Intergenic	183711	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
146503	chr20	49892321	49893050	+	0	NA	TTS (NR_048538)	TTS (NR_048538)	21054	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
138839	chr2	216501251	216501550	+	0	NA	exon (NM_000998, exon 4 of 4)	exon (NM_000998, exon 4 of 4)	2556	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
20137	chr1	192558971	192559830	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-16373	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
45395	chr11	118333701	118333950	+	0	NA	Intergenic	MLT2D|LTR|ERVL	8880	NM_000732	915		NM_000732	ENSG00000167286	CD3D	CD3-DELTA|CD3DELTA|IMD19|T3D	CD3 delta subunit of T-cell receptor complex	protein-coding
168981	chr3	152402771	152404030	+	0	NA	intron (NM_001314057, intron 3 of 11)	intron (NM_001314057, intron 3 of 11)	-62410	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
17913	chr1	160208001	160208830	+	0	NA	intron (NR_123725, intron 1 of 4)	intron (NR_123725, intron 1 of 4)	454	NR_123725	729867		NR_123725	ENSG00000227741	LOC729867	-	uncharacterized LOC729867	ncRNA
211336	chr7	104918451	104919080	+	0	NA	intron (NR_027374, intron 2 of 3)	intron (NR_027374, intron 2 of 3)	7880	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
113255	chr19	8504851	8504950	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-2260	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
226824	chr9	77648171	77648530	+	0	NA	promoter-TSS (NM_004297)	promoter-TSS (NM_004297)	-28	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
231161	chr9	129881321	129881580	+	0	NA	3' UTR (NM_001008563, exon 26 of 26)	3' UTR (NM_001008563, exon 26 of 26)	11845	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
53419	chr12	64780671	64781850	+	0	NA	5' UTR (NM_001330188, exon 1 of 14)	5' UTR (NM_001330188, exon 1 of 14)	505	NM_001330188	23329		NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
224986	chr9	33103471	33103730	+	0	NA	TTS (NM_001378497)	TTS (NM_001378497)	-5092	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
107014	chr18	32080751	32080850	+	0	NA	Intergenic	AluY|SINE|Alu	-11074	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
3114	chr1	12276221	12276480	+	0	NA	exon (NM_015378, exon 19 of 70)	exon (NM_015378, exon 19 of 70)	46320	NM_018156	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
12658	chr1	109267871	109268230	+	0	NA	exon (NM_001408, exon 17 of 34)	exon (NM_001408, exon 17 of 34)	15094	NM_001350237	84722		NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
173203	chr4	6794201	6794600	+	0	NA	intron (NM_001100590, intron 1 of 8)	LTR16B1|LTR|ERVL	11668	NM_001100590	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
157868	chr22	49600901	49601100	+	0	NA	intron (NR_110523, intron 1 of 4)	intron (NR_110523, intron 1 of 4)	56519	NR_110523	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
87555	chr16	71946851	71947030	+	0	NA	intron (NM_181536, intron 22 of 29)	intron (NM_181536, intron 22 of 29)	51409	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
216599	chr8	22047271	22048080	+	0	NA	intron (NM_001304478, intron 4 of 4)	intron (NM_001304478, intron 4 of 4)	-1256	NM_001323397	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
15796	chr1	151277351	151277650	+	0	NA	Intergenic	L2a|LINE|L2	-4022	NM_001304764	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
45360	chr11	118251001	118251330	+	0	NA	intron (NM_198275, intron 1 of 5)	intron (NM_198275, intron 1 of 5)	1200	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
214107	chr7	143885021	143885500	+	0	NA	5' UTR (NM_001206941, exon 1 of 8)	5' UTR (NM_001206941, exon 1 of 8)	110	NM_001206941	9747		NM_014719	ENSG00000198420	TCAF1	FAM115A|GATD9A	TRPM8 channel associated factor 1	protein-coding
159701	chr3	15603871	15604380	+	0	NA	intron (NM_001281725, intron 1 of 3)	THE1B-int|LTR|ERVL-MaLR	2156	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
42243	chr11	68116121	68116380	+	0	NA	intron (NM_212469, intron 1 of 10)	intron (NM_212469, intron 1 of 10)	5138	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
161911	chr3	45989071	45989430	+	0	NA	intron (NM_024513, intron 1 of 17)	intron (NM_024513, intron 1 of 17)	6574	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
102183	chr17	75149971	75150630	+	0	NA	intron (NM_001002033, intron 1 of 5)	AluSq2|SINE|Alu	2993	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
213471	chr7	139016901	139017430	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	18877	NM_080660	92092		NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding
142318	chr20	3668551	3668650	+	0	NA	3' UTR (NM_001282447, exon 22 of 22)	3' UTR (NM_001282447, exon 22 of 22)	-5201	NM_145762	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
184608	chr5	103340921	103341230	+	0	NA	Intergenic	Intergenic	77181	NM_001377288	90355		NM_033211	ENSG00000181751	MACIR	C5orf30	macrophage immunometabolism regulator	protein-coding
134266	chr2	135691121	135691380	+	0	NA	intron (NM_001378107, intron 21 of 26)	L1ME4a|LINE|L1	25853	NR_029672	406915		NR_029672	ENSG00000207654	MIR128-1	MIR128A|MIRN128-1|MIRN128A|mir-128-1	microRNA 128-1	ncRNA
162964	chr3	49683171	49683330	+	0	NA	TTS (NM_020998)	TTS (NM_020998)	5513	NM_020998	4485		NM_020998	ENSG00000173531	MST1	D3F15S2|DNF15S2|HGFL|MSP|NF15S2	macrophage stimulating 1	protein-coding
137219	chr2	191565651	191565830	+	0	NA	Intergenic	L2|LINE|L2	-112332	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
174934	chr4	49126651	49127130	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	140248	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
207217	chr7	43654401	43654600	+	0	NA	intron (NM_001321205, intron 1 of 3)	intron (NM_001321205, intron 1 of 3)	71392	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
100700	chr17	63834051	63834150	+	0	NA	intron (NM_001330439, intron 8 of 12)	intron (NM_001330439, intron 8 of 12)	4628	NM_001330440	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
181088	chr5	36882121	36882600	+	0	NA	intron (NM_133433, intron 1 of 46)	intron (NM_133433, intron 1 of 46)	5591	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
24645	chr1	246907551	246907880	+	0	NA	exon (NM_015446, exon 5 of 36)	exon (NM_015446, exon 5 of 36)	23643	NM_015446	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
155	chr1	533501	533700	+	0	NA	Intergenic	Intergenic	-38155	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
233423	chr9	137600951	137601330	+	0	NA	Intergenic	AluSc|SINE|Alu	-4500	NM_001317968	92714		NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
232114	chr9	133732801	133733280	+	0	NA	intron (NM_001134707, intron 2 of 20)	intron (NM_001134707, intron 2 of 20)	5312	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
180390	chr5	9362971	9363330	+	0	NA	intron (NM_003966, intron 3 of 22)	intron (NM_003966, intron 3 of 22)	-148183	NR_109935	101929338		NR_109935	ENSG00000251370	SEMA5A-AS1	CTD-2201E9.1	SEMA5A antisense RNA 1	ncRNA
51628	chr12	52974351	52974750	+	0	NA	Intergenic	Intergenic	-24690	NR_045962	3856		NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
184958	chr5	113269621	113269880	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	25188	NM_002387	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
62163	chr13	97259071	97259230	+	0	NA	intron (NM_001382682, intron 1 of 7)	intron (NM_001382682, intron 1 of 7)	36817	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
188018	chr5	149564571	149565300	+	0	NA	Intergenic	Intergenic	-13496	NM_001025105	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
29248	chr10	69104151	69104250	+	0	NA	3' UTR (NM_001321054, exon 2 of 2)	3' UTR (NM_001321054, exon 2 of 2)	16097	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
18485	chr1	161630301	161630500	+	0	NA	intron (NM_001244753, intron 1 of 4)	intron (NM_001244753, intron 1 of 4)	647	NM_001271036	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
401	chr1	1058501	1060380	+	0	NA	promoter-TSS (NR_148960)	promoter-TSS (NR_148960)	-294	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
163352	chr3	50435671	50436800	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	67399	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
208496	chr7	67918251	67918390	+	0	NA	Intergenic	Intergenic	-101933	NR_120514	102723427		NR_120514	ENSG00000225209	LOC102723427	-	uncharacterized LOC102723427	ncRNA
60541	chr13	41461601	41462400	+	0	NA	intron (NM_014059, intron 2 of 4)	intron (NM_014059, intron 2 of 4)	4450	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
227336	chr9	89456501	89457800	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	22740	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
175793	chr4	77804221	77805250	+	0	NA	intron (NM_001365006, intron 1 of 11)	L1MB7|LINE|L1	14329	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
55964	chr12	110046901	110047100	+	0	NA	intron (NR_148517, intron 1 of 2)	MIRb|SINE|MIR	1647	NR_148516								
153188	chr22	23844751	23845050	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-5894	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
196460	chr6	43515451	43515550	+	0	NA	intron (NM_015388, intron 3 of 8)	intron (NM_015388, intron 3 of 8)	1426	NM_015388	25844		NM_015388	ENSG00000137207	YIPF3	C6orf109|FinGER3|KLIP1|YIPFbeta2|Yip5b|dJ337H4.3	Yip1 domain family member 3	protein-coding
40192	chr11	62924051	62924780	+	0	NA	Intergenic	AluJb|SINE|Alu	-3052	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
167614	chr3	129576021	129577690	+	0	NA	intron (NM_015103, intron 9 of 35)	intron (NM_015103, intron 9 of 35)	28470	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
187892	chr5	148825821	148828030	+	0	NA	exon (NM_000024, exon 1 of 1)	exon (NM_000024, exon 1 of 1)	314	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
67336	chr14	69648751	69649050	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	37304	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
169483	chr3	169679721	169680100	+	0	NA	Intergenic	L1PA2|LINE|L1	-16198	NM_001366473	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
218969	chr8	61682151	61682450	+	0	NA	intron (NM_032466, intron 2 of 13)	intron (NM_032466, intron 2 of 13)	7511	NM_020164	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
170115	chr3	183181121	183181580	+	0	NA	intron (NM_015078, intron 27 of 29)	intron (NM_015078, intron 27 of 29)	-18616	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
217056	chr8	23402801	23403050	+	0	NA	intron (NM_002318, intron 1 of 13)	intron (NM_002318, intron 1 of 13)	1195	NM_002318	4017		NM_002318	ENSG00000134013	LOXL2	LOR|LOR2|WS9-14	lysyl oxidase like 2	protein-coding
222717	chr8	141318971	141320080	+	0	NA	Intergenic	Intergenic	-11237	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
83045	chr16	22323721	22324680	+	0	NA	intron (NM_018119, intron 14 of 20).2	intron (NM_018119, intron 14 of 20).2	26791	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
52683	chr12	56466221	56466800	+	0	NA	Intergenic	Intergenic	-2068	NM_207344	283377		NM_207344	ENSG00000176422	SPRYD4	-	SPRY domain containing 4	protein-coding
38255	chr11	36550571	36550930	+	0	NA	intron (NM_001377277, intron 3 of 4)	MLT1K|LTR|ERVL-MaLR	-17257	NM_000448	5896		NM_000448	ENSG00000166349	RAG1	RAG-1|RNF74	recombination activating 1	protein-coding
80164	chr16	2109871	2110230	+	0	NA	exon (NM_000296, exon 15 of 46)	exon (NM_000296, exon 15 of 46)	-3297	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
216320	chr8	12756871	12757030	+	0	NA	Intergenic	Intergenic	-1424	NM_152271	91694		NM_152271	ENSG00000154359	LONRF1	RNF191	LON peptidase N-terminal domain and ring finger 1	protein-coding
235677	chrX	48600751	48601730	+	0	NA	intron (NM_001347217, intron 6 of 9)	intron (NM_001347217, intron 6 of 9)	3748	NM_017883	64743		NM_017883	ENSG00000101940	WDR13	MG21	WD repeat domain 13	protein-coding
133307	chr2	113699001	113699480	+	0	NA	Intergenic	L1M4|LINE|L1	22128	NR_039943	100616208		NR_039943	ENSG00000265429	MIR4782	-	microRNA 4782	ncRNA
128507	chr2	60467141	60467400	+	0	NA	intron (NM_001365609, intron 2 of 2)	intron (NM_001365609, intron 2 of 2)	-75895	NR_132992	106660609		NR_132991	ENSG00000228590	MIR4432HG	-	MIR4432 host gene	ncRNA
203309	chr6	170144571	170144950	+	0	NA	Intergenic	Intergenic	-15882	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
177230	chr4	108540501	108540700	+	0	NA	non-coding (NR_026968, exon 4 of 4)	non-coding (NR_026968, exon 4 of 4)	-16633	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
105679	chr18	2644351	2645050	+	0	NA	Intergenic	Intergenic	10695	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
155828	chr22	39390871	39391100	+	0	NA	Intergenic	AluSx|SINE|Alu	-8795	NM_006116	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
196791	chr6	45708071	45708430	+	0	NA	Intergenic	Intergenic	229347	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
76681	chr15	75727971	75729180	+	0	NA	TTS (NM_175881)	TTS (NM_175881)	4534	NM_175881	161753		NM_175881	ENSG00000182950	CIMAP1C	ODF3L1	ciliary microtubule associated protein 1C	protein-coding
15592	chr1	150584301	150584700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4762	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
3274	chr1	15231851	15231950	+	0	NA	Intergenic	L1MB2|LINE|L1	-15325	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
94394	chr17	28958921	28959180	+	0	NA	exon (NM_001098635, exon 10 of 17)	exon (NM_001098635, exon 10 of 17)	-7532	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
43550	chr11	82959951	82961250	+	0	NA	Intergenic	Intergenic	-58860	NM_001319214	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
171880	chr4	777601	778050	+	0	NA	Intergenic	L1ME1|LINE|L1	4023	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
185449	chr5	131259651	131259950	+	0	NA	Intergenic	Intergenic	-4253	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
204278	chr7	2648721	2649180	+	0	NA	intron (NM_025250, intron 5 of 13)	intron (NM_025250, intron 5 of 13)	16964	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
152725	chr22	21664771	21664930	+	0	NA	Intergenic	AluY|SINE|Alu	-1134	NM_148176	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
118062	chr19	34306421	34306680	+	0	NA	intron (NM_014686, intron 2 of 13)	intron (NM_014686, intron 2 of 13)	51996	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
222560	chr8	140613921	140614180	+	0	NA	intron (NM_012154, intron 1 of 18)	AluSx|SINE|Alu	21583	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
10446	chr1	66271351	66271650	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-60608	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
108250	chr18	63226871	63227230	+	0	NA	intron (NM_000633, intron 2 of 2)	L1ME3Cz|LINE|L1	92719	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
234751	chrX	23318171	23318430	+	0	NA	Intergenic	Intergenic	-16549	NM_173495	139411		NM_173495	ENSG00000165186	PTCHD1	AUTSX4|CXDELp22.11|DELXP22.11	patched domain containing 1	protein-coding
158454	chr22	50626501	50626980	+	0	NA	exon (NM_001085425, exon 5 of 9)	exon (NM_001085425, exon 5 of 9)	1412	NM_000487	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
88147	chr16	81631471	81631830	+	0	NA	intron (NM_030629, intron 3 of 20)	L1ME3B|LINE|L1	20302	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
35622	chr11	1782251	1782350	+	0	NA	Intergenic	Intergenic	-18373	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
190009	chr5	177477401	177477680	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-3906	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
167713	chr3	130906651	130907150	+	0	NA	intron (NM_001001487, intron 2 of 28)	L1ME1|LINE|L1	12350	NM_014382	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
233231	chr9	137246821	137247090	+	0	NA	intron (NM_001001710, intron 1 of 6)	intron (NM_001001710, intron 1 of 6)	796	NM_001001710	401565		NM_001001710	ENSG00000188163	CIMIP2A	FAM166A|HSD46	ciliary microtubule inner protein 2A	protein-coding
175694	chr4	77069321	77070330	+	0	NA	intron (NM_006835, intron 1 of 6)	intron (NM_006835, intron 1 of 6)	5085	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
68960	chr14	91412921	91414100	+	0	NA	intron (NM_001080414, intron 2 of 29)	intron (NM_001080414, intron 2 of 29)	4310	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
27807	chr10	37712351	37712450	+	0	NA	Intergenic	Intergenic	82775	NR_051997	100419868		NR_051997		ZNF33BP1	-	zinc finger protein 33B pseudogene 1	pseudo
15261	chr1	149635861	149637730	+	0	NA	intron (NR_111950, intron 1 of 8)	U1|snRNA|snRNA	29783	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
182847	chr5	69367521	69368130	+	0	NA	intron (NM_001015892, intron 1 of 2).2	AluJo|SINE|Alu	-1472	NM_133343	5884		NM_002873	ENSG00000152942	RAD17	CCYC|HRAD17|R24L|RAD17SP|RAD24	RAD17 checkpoint clamp loader component	protein-coding
34564	chr10	133160971	133161530	+	0	NA	intron (NM_001347866, intron 1 of 3)	intron (NM_001347866, intron 1 of 3)	1031	NM_152643	85442		NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND	kinase non-catalytic C-lobe domain containing 1	protein-coding
11269	chr1	89068671	89068830	+	0	NA	Intergenic	LTR8|LTR|ERV1	-3542	NM_002053	2633		NM_002053	ENSG00000117228	GBP1	hGBP1	guanylate binding protein 1	protein-coding
222689	chr8	141269101	141269300	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	14633	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
177384	chr4	112153251	112153680	+	0	NA	intron (NM_152400, intron 1 of 1)	intron (NM_152400, intron 1 of 1)	8011	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
180529	chr5	14577771	14578230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3792	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
178810	chr4	153519871	153520250	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	53700	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
39501	chr11	61035651	61035950	+	0	NA	Intergenic	Intergenic	-58163	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
61763	chr13	74276921	74277230	+	0	NA	Intergenic	Intergenic	45631	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
23829	chr1	234594001	234594200	+	0	NA	Intergenic	Intergenic	15425	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
48418	chr12	9673151	9674700	+	0	NA	intron (NM_001197317, intron 1 of 3)	L1PA10|LINE|L1	4212	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
68995	chr14	91486921	91487350	+	0	NA	intron (NR_158976, intron 3 of 16)	AluSx1|SINE|Alu	23175	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
66632	chr14	63845671	63845930	+	0	NA	Intergenic	AluSx|SINE|Alu	-7204	NM_015180	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
67907	chr14	74608921	74610000	+	0	NA	intron (NM_000428, intron 1 of 35)	(CACCCTC)n|Simple_repeat|Simple_repeat	2777	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
78735	chr15	98776621	98777280	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	-7476	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
157341	chr22	44666951	44669200	+	0	NA	promoter-TSS (NM_001017529)	promoter-TSS (NM_001017529)	-472	NM_001017529	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
150729	chr21	43748551	43748850	+	0	NA	intron (NM_001331030, intron 4 of 9)	(TCCC)n|Simple_repeat|Simple_repeat	7214	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
190303	chr5	179600101	179600480	+	0	NA	intron (NR_110560, intron 3 of 8).2	intron (NR_110560, intron 3 of 8).2	3451	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
220418	chr8	100280721	100281330	+	0	NA	intron (NM_183419, intron 2 of 9)	intron (NM_183419, intron 2 of 9)	21168	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
141844	chr20	534901	535300	+	0	NA	intron (NM_177559, intron 1 of 13)	AluJo|SINE|Alu	8690	NM_001895	1457		NM_001895	ENSG00000101266	CSNK2A1	CK2A1|CKII|Cka1|Cka2|OCNDS	casein kinase 2 alpha 1	protein-coding
184870	chr5	112419071	112419530	+	0	NA	promoter-TSS (NM_001347888)	promoter-TSS (NM_001347888)	-23	NM_001347888	64097		NM_022140	ENSG00000129595	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
63929	chr14	22002621	22003480	+	0	NA	Intergenic	Intergenic	-332033	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
177017	chr4	106322671	106322830	+	0	NA	intron (NM_001142416, intron 1 of 6)	AluSx1|SINE|Alu	-6067	NM_001163436	93627		NM_033115	ENSG00000145348	TBCK	FERRY1|Fy-1|HSPC302|IHPRF3|TBCKL	TBC1 domain containing kinase	protein-coding
192005	chr6	16327221	16328000	+	0	NA	exon (NM_001128164, exon 7 of 8)	exon (NM_001128164, exon 7 of 8)	89023	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
184345	chr5	96962171	96963930	+	0	NA	intron (NM_175920, intron 1 of 17)	intron (NM_175920, intron 1 of 17)	4617	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
46064	chr11	122742671	122742830	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	87028	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
5260	chr1	25031611	25032980	+	0	NA	Intergenic	MIRb|SINE|MIR	8792	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
28401	chr10	47705501	47706600	+	0	NA	promoter-TSS (NR_160660)	promoter-TSS (NR_160660)	-11	NR_160661	439965		NR_027634		SHLD2P3	FAM35B2|FAM35DP	shieldin complex subunit 2 pseudogene 3	pseudo
28895	chr10	62852201	62852430	+	0	NA	Intergenic	MIR3|SINE|MIR	-33148	NM_001136178	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
87448	chr16	70999871	71000030	+	0	NA	intron (NM_001270974, intron 23 of 85)	intron (NM_001270974, intron 23 of 85)	-198792	NM_018052	55697		NM_018052	ENSG00000103043	VAC14	ArPIKfyve|TAX1BP2|TRX	VAC14 component of PIKFYVE complex	protein-coding
220685	chr8	101235571	101236250	+	0	NA	Intergenic	Intergenic	-29846	NM_001267709	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
55328	chr12	103939071	103939430	+	0	NA	intron (NM_003299, intron 7 of 17)	AluJr|SINE|Alu	8825	NR_037425	100500842		NR_037425	ENSG00000284503	MIR3652	-	microRNA 3652	ncRNA
134032	chr2	131090501	131091350	+	0	NA	intron (NM_001321743, intron 2 of 8)	AluY|SINE|Alu	2237	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
47117	chr12	679251	679550	+	0	NA	Intergenic	Intergenic	-15955	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
37189	chr11	14270001	14270380	+	0	NA	Intergenic	MIR3|SINE|MIR	88295	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
53884	chr12	70304271	70305550	+	0	NA	intron (NR_037615, intron 3 of 16)	L1PA4|LINE|L1	61196	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
182525	chr5	65562421	65564280	+	0	NA	promoter-TSS (NM_022145)	promoter-TSS (NM_022145)	54	NM_015342	23398		NM_015342	ENSG00000113593	PPWD1	-	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding
138476	chr2	206798001	206798200	+	0	NA	Intergenic	L1MB3|LINE|L1	-14792	NR_036077	100422993		NR_036077	ENSG00000283469	MIR3130-1	MIR3130-3|mir-3130-1	microRNA 3130-1	ncRNA
147875	chr20	62828201	62829500	+	0	NA	intron (NM_001853, intron 18 of 31)	intron (NM_001853, intron 18 of 31)	11800	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
72900	chr15	40339871	40340030	+	0	NA	exon (NM_207380, exon 2 of 11)	exon (NM_207380, exon 2 of 11)	1017	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
86092	chr16	57641271	57641430	+	0	NA	intron (NM_001290144, intron 1 of 13)	intron (NM_001290144, intron 1 of 13)	1858	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
237555	chrX	120649271	120649430	+	0	NA	Intergenic	AluSz|SINE|Alu	-19200	NM_152692	29071		NM_152692	ENSG00000171155	C1GALT1C1	AHUS8|C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS	C1GALT1 specific chaperone 1	protein-coding
147340	chr20	58226721	58226980	+	0	NA	intron (NM_001304369, intron 1 of 3)	intron (NM_001304369, intron 1 of 3)	1803	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
28860	chr10	62647251	62647800	+	0	NA	Intergenic	Intergenic	-157195	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
13139	chr1	111669421	111669750	+	0	NA	intron (NM_001370217, intron 1 of 7)	intron (NM_001370217, intron 1 of 7)	4791	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
165097	chr3	71503171	71503830	+	0	NA	intron (NM_001012505, intron 2 of 6)	AluSx|SINE|Alu	38589	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
54300	chr12	89398071	89398830	+	0	NA	Intergenic	Intergenic	-45949	NM_001946	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
75313	chr15	65297541	65298900	+	0	NA	Intergenic	AluSz|SINE|Alu	2169	NR_002756	26831		NR_002756	ENSG00000199568	RNU5A-1	RNU5|RNU5A|RNU5C|U5A|U5B1	RNA, U5A small nuclear 1	snRNA
35275	chr11	922101	922730	+	0	NA	Intergenic	Intergenic	-3394	NM_001242837	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
95905	chr17	38898021	38899770	+	0	NA	intron (NM_006148, intron 4 of 6)	intron (NM_006148, intron 4 of 6)	-16084	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
207854	chr7	50355471	50356030	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	36702	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
41695	chr11	66637571	66639100	+	0	NA	promoter-TSS (NM_001198844)	promoter-TSS (NM_001198844)	-282	NM_001198843	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
32513	chr10	102775101	102775300	+	0	NA	intron (NM_001083913, intron 1 of 3)	intron (NM_001083913, intron 1 of 3)	-1021	NM_017787	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
128886	chr2	64116701	64116900	+	0	NA	intron (NM_020651, intron 1 of 6)	Tigger1|DNA|TcMar-Tigger	27620	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
156255	chr22	40407371	40407930	+	0	NA	intron (NM_001350047, intron 12 of 20)	(CCCCAA)n|Simple_repeat|Simple_repeat	37056	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
167136	chr3	127761401	127761780	+	0	NA	intron (NM_001003794, intron 3 of 7)	intron (NM_001003794, intron 3 of 7)	61292	NM_007283	11343		NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
144173	chr20	34085621	34086080	+	0	NA	TTS (NM_007367)	TTS (NM_007367)	26393	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
172119	chr4	1169401	1170150	+	0	NA	intron (NM_001128325, intron 6 of 6)	intron (NM_001128325, intron 6 of 6)	2808	NM_012445	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
193832	chr6	31494601	31495740	+	0	NA	promoter-TSS (NR_149132)	promoter-TSS (NR_149132)	289	NM_001289160	4277		NM_005931	ENSG00000204516	MICB	PERB11.2	MHC class I polypeptide-related sequence B	protein-coding
216577	chr8	21959721	21961050	+	0	NA	intron (NM_001362802, intron 1 of 26)	intron (NM_001362802, intron 1 of 26)	40723	NM_001362802	23039		NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
121531	chr19	47232621	47233550	+	0	NA	promoter-TSS (NM_001127242)	promoter-TSS (NM_001127242)	-418	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
213519	chr7	139076601	139077380	+	0	NA	intron (NM_020119, intron 5 of 12)	intron (NM_020119, intron 5 of 12)	32730	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
121816	chr19	47934071	47934230	+	0	NA	promoter-TSS (NR_004435).2	promoter-TSS (NR_004435).2	-31	NR_004436	100126799		NR_004436		SNAR-A2	SNAR-A53129250	small NF90 (ILF3) associated RNA A2	snRNA
234939	chrX	38562221	38562800	+	0	NA	intron (NM_004615, intron 1 of 7)	intron (NM_004615, intron 1 of 7)	968	NM_004615	7102		NM_004615	ENSG00000156298	TSPAN7	A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b|XLID58	tetraspanin 7	protein-coding
41660	chr11	66558551	66558650	+	0	NA	intron (NR_047663, intron 11 of 20)	AluJb|SINE|Alu	10006	NM_003793	8722		NM_003793	ENSG00000174080	CTSF	CATSF|CLN13	cathepsin F	protein-coding
145986	chr20	46365701	46367100	+	0	NA	3' UTR (NM_133171, exon 22 of 22)	3' UTR (NM_133171, exon 22 of 22)	-1942	NM_001281458	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
203003	chr6	163404921	163405180	+	0	NA	Intergenic	Intergenic	8900	NR_037593	100526820		NR_037593	ENSG00000270419	CAHM	LINC00468	colon adenocarcinoma hypermethylated	ncRNA
104937	chr17	81933151	81933780	+	0	NA	intron (NM_001330523, intron 6 of 6)	intron (NM_001330523, intron 6 of 6)	3835	NM_153824	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
201350	chr6	144602571	144603350	+	0	NA	intron (NM_001375323, intron 1 of 24)	Tigger1|DNA|TcMar-Tigger	19812	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
39429	chr11	60899221	60900150	+	0	NA	intron (NM_014502, intron 10 of 15)	MER3|DNA|hAT-Charlie	6900	NM_014502	27339		NM_014502	ENSG00000110107	PRPF19	NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4	pre-mRNA processing factor 19	protein-coding
166971	chr3	125519621	125520700	+	0	NA	promoter-TSS (NM_003794)	promoter-TSS (NM_003794)	42	NR_073435	8723		NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
99116	chr17	49215821	49216380	+	0	NA	intron (NM_001135186, intron 1 of 7)	AluSp|SINE|Alu	5393	NM_016428	51225		NM_016428	ENSG00000108798	ABI3	NESH|SSH3BP3	ABI family member 3	protein-coding
159382	chr3	13401601	13401800	+	0	NA	intron (NM_024923, intron 1 of 39)	intron (NM_024923, intron 1 of 39)	18622	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
140432	chr2	233124451	233124750	+	0	NA	intron (NM_005541, intron 3 of 26).2	intron (NM_005541, intron 3 of 26).2	64258	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
235858	chrX	50448601	50448800	+	0	NA	intron (NM_001013742, intron 1 of 27)	intron (NM_001013742, intron 1 of 27)	22125	NM_001013742	139189		NM_001013742	ENSG00000274588	DGKK	-	diacylglycerol kinase kappa	protein-coding
172060	chr4	1023071	1023230	+	0	NA	intron (NM_001370296, intron 3 of 6)	intron (NM_001370296, intron 3 of 6)	10686	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
79219	chr16	363951	364380	+	0	NA	Intergenic	Intergenic	6373	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
35755	chr11	2144051	2144830	+	0	NA	intron (NR_133657, intron 1 of 2)	CpG	-3497	NM_001291862	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
23595	chr1	229856171	229856580	+	0	NA	Intergenic	Intergenic	29443	NR_146476	101927504		NR_146473	ENSG00000227043	LINC01682	-	long intergenic non-protein coding RNA 1682	ncRNA
230931	chr9	129400271	129400630	+	0	NA	Intergenic	Intergenic	63527	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
145578	chr20	44494721	44494980	+	0	NA	TTS (NM_024331)	TTS (NM_024331)	18976	NM_001261839	79183		NM_024331	ENSG00000124120	TTPAL	C20orf121	alpha tocopherol transfer protein like	protein-coding
226108	chr9	62863401	62863800	+	0	NA	intron (NR_122076, intron 4 of 5)	intron (NR_122076, intron 4 of 5)	22955	NR_135010	442421		NR_024496		PTGER4P2-CDK2AP2P2	-	PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene	pseudo
189628	chr5	176034261	176035330	+	0	NA	Intergenic	Intergenic	27260	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
164030	chr3	53257101	53257330	+	0	NA	Intergenic	Intergenic	-1101	NM_001258028	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
178204	chr4	142549921	142550380	+	0	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	10605	NM_001385338	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
58584	chr12	132450521	132450930	+	0	NA	Intergenic	Intergenic	-39426	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
103161	chr17	77425671	77425830	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	20673	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
105990	chr18	6414251	6414850	+	0	NA	intron (NM_001365765, intron 1 of 18)	CpG	361	NM_001330559	91133		NM_173464	ENSG00000154655	L3MBTL4	HsT1031	L3MBTL histone methyl-lysine binding protein 4	protein-coding
102458	chr17	75709221	75709980	+	0	NA	Intergenic	AluSq2|SINE|Alu	-11859	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
12857	chr1	110082321	110082930	+	0	NA	promoter-TSS (NR_126382)	promoter-TSS (NR_126382)	-63	NR_126382	104355139		NR_126382	ENSG00000258673	LINC01397	-	long intergenic non-protein coding RNA 1397	ncRNA
13337	chr1	113803851	113804350	+	0	NA	intron (NM_018364, intron 1 of 6)	AluJr4|SINE|Alu	8376	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
23560	chr1	229341771	229343680	+	0	NA	intron (NM_145257, intron 1 of 3)	CpG	322	NM_145257	126731		NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
129195	chr2	68198221	68198480	+	0	NA	intron (NM_000945, intron 2 of 5)	(TACATATATG)n|Simple_repeat|Simple_repeat	40462	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
90924	chr17	2602901	2603480	+	0	NA	intron (NM_000430, intron 1 of 10)	AluJo|SINE|Alu	9536	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
185476	chr5	131291271	131291430	+	0	NA	intron (NM_001038702, intron 1 of 4)	MER5B|DNA|hAT-Charlie	27297	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
152892	chr22	22720271	22721130	+	0	NA	Intergenic	Intergenic	74388	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
106045	chr18	8786521	8786780	+	0	NA	intron (NM_001378207, intron 6 of 13)	intron (NM_001378207, intron 6 of 13)	69269	NM_015210	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
112812	chr19	7505221	7505480	+	0	NA	exon (NM_198534, exon 5 of 9)	exon (NM_198534, exon 5 of 9)	7802	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
20631	chr1	199172801	199174000	+	0	NA	intron (NR_147896, intron 3 of 3)	intron (NR_147896, intron 3 of 3)	24802	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
229945	chr9	126672101	126672300	+	0	NA	intron (NM_001174147, intron 2 of 7)	MIRb|SINE|MIR	58272	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
29112	chr10	68341901	68342300	+	0	NA	3' UTR (NM_001322449, exon 9 of 9)	3' UTR (NM_001322449, exon 9 of 9)	-9172	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
8614	chr1	41661271	41662990	+	0	NA	intron (NM_001127714, intron 1 of 7)	CpG	-177447	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
84356	chr16	30218121	30218530	+	0	NA	Intergenic	Intergenic	-11398	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
105646	chr18	1521651	1521750	+	0	NA	Intergenic	L1PA2|LINE|L1	-162071	NR_023926	56651		NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	ncRNA
109432	chr19	710021	710430	+	0	NA	intron (NM_002579, intron 1 of 8)	intron (NM_002579, intron 1 of 8)	1290	NM_002579	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
18761	chr1	167501821	167502450	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	16394	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
157847	chr22	48492501	48492700	+	0	NA	intron (NM_001082967, intron 1 of 3)	intron (NM_001082967, intron 1 of 3)	3047	NM_001082967	25817		NM_015381	ENSG00000219438	TAFA5	FAM19A5|QLLK5208|TAFA-5|UNQ5208	TAFA chemokine like family member 5	protein-coding
89743	chr16	89438871	89439430	+	0	NA	intron (NR_110932, intron 1 of 2)	intron (NR_110932, intron 1 of 2)	8232	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
144720	chr20	36567051	36567350	+	0	NA	intron (NR_109939, intron 2 of 4)	AluSx1|SINE|Alu	6075	NR_109939	101926987		NR_109939	ENSG00000232907	DLGAP4-AS1	CCAT7	DLGAP4 antisense RNA 1	ncRNA
45870	chr11	119694251	119694700	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	34725	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
205140	chr7	7165351	7165650	+	0	NA	Intergenic	Intergenic	-17044	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
37387	chr11	17063501	17063700	+	0	NA	Intergenic	Intergenic	11144	NR_000022	26822		NR_000022	ENSG00000272034	SNORD14A	RNU14|RNU14A|U14|U14-S13-5	small nucleolar RNA, C/D box 14A	snoRNA
47319	chr12	1737951	1738250	+	0	NA	intron (NM_001375364, intron 2 of 8).2	AluJb|SINE|Alu	47030	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
171752	chr3	198107971	198108130	+	0	NA	Intergenic	Intergenic	-27379	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
101423	chr17	67401071	67401230	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSz|SINE|Alu	23869	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
232755	chr9	136663601	136664530	+	0	NA	intron (NM_016215, intron 2 of 10)	intron (NM_016215, intron 2 of 10)	1149	NR_045110	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
154721	chr22	36450271	36450430	+	0	NA	Intergenic	AluSz|SINE|Alu	31290	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
31104	chr10	89303371	89303530	+	0	NA	intron (NM_001547, intron 1 of 1)	intron (NM_001547, intron 1 of 1)	1404	NM_001547	3433		NM_001547	ENSG00000119922	IFIT2	G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54|ISG-54 K|ISG-54K|ISG54|P54|cig42	interferon induced protein with tetratricopeptide repeats 2	protein-coding
238424	chrX	150696221	150697730	+	0	NA	intron (NR_148676, intron 1 of 16)	MLT1K|LTR|ERVL-MaLR	3579	NM_001306144	8776		NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
237632	chrX	124063771	124064500	+	0	NA	intron (NM_001042751, intron 20 of 33)	intron (NM_001042751, intron 20 of 33)	102429	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
219127	chr8	66033471	66034130	+	0	NA	intron (NR_146171, intron 1 of 6)	intron (NR_146171, intron 1 of 6)	12247	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
94024	chr17	27200651	27200750	+	0	NA	Intergenic	MIR|SINE|MIR	93296	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
65580	chr14	52010871	52011230	+	0	NA	TTS (NM_016039)	TTS (NM_016039)	21504	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
187725	chr5	143413971	143414530	+	0	NA	intron (NM_001018075, intron 1 of 8)	intron (NM_001018075, intron 1 of 8)	-8895	NM_001364180	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
87626	chr16	74395251	74395550	+	0	NA	Intergenic	Intergenic	11819	NR_135170	105376772		NR_135170		LOC105376772	-	uncharacterized LOC105376772	ncRNA
46998	chr12	139921	140180	+	0	NA	intron (NM_015232, intron 3 of 12).2	intron (NM_015232, intron 3 of 12).2	9119	NR_033859	574538		NR_033859	ENSG00000249695	LOC574538	-	uncharacterized LOC574538	ncRNA
51827	chr12	53449901	53450430	+	0	NA	Intergenic	AluJr|SINE|Alu	-1937	NM_001128914	5094		NM_005016	ENSG00000197111	PCBP2	HNRNPE2|HNRPE2|hnRNP-E2	poly(rC) binding protein 2	protein-coding
126439	chr2	27965821	27966700	+	0	NA	intron (NM_199193, intron 4 of 13)	L1MC5|LINE|L1	-30107	NR_036230	100422965		NR_036230	ENSG00000265321	MIR4263	-	microRNA 4263	ncRNA
66415	chr14	61516071	61516430	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	53944	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
56209	chr12	111544971	111545130	+	0	NA	intron (NM_002973, intron 5 of 24)	AluYk3|SINE|Alu	54265	NM_001372574	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
84198	chr16	29861851	29861950	+	0	NA	intron (NM_001286585, intron 1 of 4)	AluSg|SINE|Alu	1326	NM_006319	10423		NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
82581	chr16	18787171	18787980	+	0	NA	intron (NM_001019, intron 3 of 4)	intron (NM_001019, intron 3 of 4)	2759	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
184521	chr5	101390471	101390630	+	0	NA	Intergenic	Intergenic	-487268	NM_175052	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
176405	chr4	89026751	89026850	+	0	NA	intron (NM_014883, intron 2 of 23)	THE1D|LTR|ERVL-MaLR	30385	NM_014883	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
219292	chr8	69356771	69356930	+	0	NA	Intergenic	L1PA3|LINE|L1	91394	NR_110433	100505739		NR_110433	ENSG00000253479	LINC01603	-	long intergenic non-protein coding RNA 1603	ncRNA
133665	chr2	127066101	127066300	+	0	NA	intron (NM_139346, intron 6 of 15)	intron (NM_139346, intron 6 of 15)	15865	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
49802	chr12	31965051	31966400	+	0	NA	intron (NM_018169, intron 2 of 5)	AluSc|SINE|Alu	6310	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
162513	chr3	48586221	48586880	+	0	NA	intron (NM_000094, intron 26 of 118)	intron (NM_000094, intron 26 of 118)	-7573	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
26054	chr10	12586401	12586800	+	0	NA	intron (NM_153498, intron 2 of 10)	intron (NM_153498, intron 2 of 10)	7847	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
148041	chr20	63218621	63219280	+	0	NA	Intergenic	Intergenic	-2819	NM_017798	54915		NM_017798	ENSG00000149658	YTHDF1	C20orf21|DF1	YTH N6-methyladenosine RNA binding protein F1	protein-coding
90368	chr17	1240421	1240780	+	0	NA	Intergenic	LTR8|LTR|ERV1	-10878	NM_001322841	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
157525	chr22	45413301	45414500	+	0	NA	promoter-TSS (NM_001291501)	promoter-TSS (NM_001291501)	207	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
227760	chr9	93108151	93108580	+	0	NA	intron (NM_001318010, intron 2 of 3)	intron (NM_001318010, intron 2 of 3)	12148	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
198611	chr6	107728601	107729230	+	0	NA	intron (NM_001286408, intron 4 of 6)	intron (NM_001286408, intron 4 of 6)	3235	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
164217	chr3	56918501	56918730	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	-2179	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
194334	chr6	32851801	32852270	+	0	NA	intron (NM_001292022, intron 3 of 10).7	intron (NM_001292022, intron 3 of 10).7	726	NM_001292022	6890		NM_000593	ENSG00000168394	TAP1	ABC17|ABCB2|APT1|D6S114E|PSF-1|PSF1|RING4|TAP1*0102N|TAP1N	transporter 1, ATP binding cassette subfamily B member	protein-coding
10628	chr1	69658601	69658800	+	0	NA	intron (NM_001366842, intron 1 of 7)	intron (NM_001366842, intron 1 of 7)	89359	NM_001366842	57554		NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
227491	chr9	91186621	91186880	+	0	NA	Intergenic	Intergenic	67688	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
100757	chr17	63961401	63962600	+	0	NA	intron (NM_000334, intron 10 of 23)	intron (NM_000334, intron 10 of 23)	10918	NM_000334	6329		NM_000334	ENSG00000007314	SCN4A	CMS16|CMYP22A|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium voltage-gated channel alpha subunit 4	protein-coding
230759	chr9	128898221	128898780	+	0	NA	intron (NM_019594, intron 2 of 3)	intron (NM_019594, intron 2 of 3)	-15977	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
158040	chr22	49934901	49935600	+	0	NA	Intergenic	CpG	16616	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
84405	chr16	30341851	30342230	+	0	NA	Intergenic	Intergenic	-6666	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
110348	chr19	1883791	1884800	+	0	NA	intron (NM_001130111, intron 1 of 4)	intron (NM_001130111, intron 1 of 4)	1201	NM_001130111	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
84891	chr16	31197651	31198180	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-3970	NR_102400	100652740		NR_102400	ENSG00000261359	PYCARD-AS1	C16orf98|PYCARDOS	PYCARD antisense RNA 1	ncRNA
182341	chr5	59146851	59147030	+	0	NA	intron (NM_001364603, intron 5 of 15)	MER1B|DNA|hAT-Charlie	-107464	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
191681	chr6	13485651	13486400	+	0	NA	5' UTR (NM_001242628, exon 1 of 2)	5' UTR (NM_001242628, exon 1 of 2)	158	NM_001242628	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
48850	chr12	12379751	12380750	+	0	NA	intron (NM_058169, intron 2 of 3)	Tigger1|DNA|TcMar-Tigger	23172	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
75235	chr15	64872951	64873450	+	0	NA	Intergenic	Intergenic	31285	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
8951	chr1	44310951	44311050	+	0	NA	intron (NM_001301698, intron 4 of 7)	(CA)n|Simple_repeat|Simple_repeat	44257	NM_001301698	79033		NM_024066	ENSG00000117419	ERI3	PINT1|PRNPIP	ERI1 exoribonuclease family member 3	protein-coding
13906	chr1	119870851	119871200	+	0	NA	Intergenic	Intergenic	25490	NM_021794	11085		NM_021794	ENSG00000134249	ADAM30	svph4	ADAM metallopeptidase domain 30	protein-coding
310	chr1	972651	973330	+	0	NA	exon (NM_032129, exon 11 of 16)	exon (NM_032129, exon 11 of 16)	6508	NM_001160184	84069		NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
88349	chr16	84553701	84554780	+	0	NA	Intergenic	Intergenic	-49581	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
26542	chr10	21527101	21527780	+	0	NA	Intergenic	CpG	-1758	NM_207371	387640		NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
116453	chr19	18059371	18060000	+	0	NA	intron (NM_001290023, intron 16 of 16)	MIRb|SINE|MIR	27249	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
4494	chr1	21655601	21656200	+	0	NA	intron (NM_002885, intron 1 of 24)	intron (NM_002885, intron 1 of 24)	-4002	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
194001	chr6	31781171	31781330	+	0	NA	intron (NM_006295, intron 21 of 29).4	MER91A|DNA|hAT-Tip100	-3922	NM_025258	80737		NM_025258	ENSG00000204396	VWA7	C6orf27|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding
227517	chr9	91376221	91376680	+	0	NA	Intergenic	Intergenic	-14481	NM_001306190	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
166308	chr3	112667671	112667980	+	0	NA	Intergenic	Intergenic	-26682	NM_199511	151887		NM_178274	ENSG00000091986	CCDC80	CL2|DRO1|LINC01279|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
30598	chr10	80159771	80160130	+	0	NA	intron (NM_145868, intron 12 of 15)	intron (NM_145868, intron 12 of 15)	27220	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
138449	chr2	206163101	206163530	+	0	NA	TTS (NM_001959)	TTS (NM_001959)	1087	NR_002590	619569		NR_002590	ENSG00000207406	SNORA41	ACA41|SNORA41A	small nucleolar RNA, H/ACA box 41	snoRNA
208447	chr7	66922001	66922600	+	0	NA	intron (NM_017994, intron 1 of 6)	intron (NM_017994, intron 1 of 6)	1075	NM_017994	55069		NM_017994	ENSG00000106609	TMEM248	C7orf42	transmembrane protein 248	protein-coding
114656	chr19	13051621	13052730	+	0	NA	intron (NM_001271043, intron 2 of 10)	MER5A|DNA|hAT-Charlie	27396	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
118178	chr19	35043971	35044930	+	0	NA	intron (NM_182983, intron 2 of 12)	intron (NM_182983, intron 2 of 12)	2729	NM_001384133	3249		NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
92230	chr17	7899121	7899380	+	0	NA	intron (NM_001005271, intron 14 of 39)	intron (NM_001005271, intron 14 of 39)	-6873	NR_003000	677763		NR_003000	ENSG00000252835	SCARNA21	ACA68|SCARNA21A	small Cajal body-specific RNA 21	ncRNA
214150	chr7	144364971	144365330	+	0	NA	exon (NM_005435, exon 2 of 15)	exon (NM_005435, exon 2 of 15)	1517	NR_033942	728377		NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor 34, pseudogene	pseudo
149757	chr21	34669201	34669950	+	0	NA	exon (NM_053277, exon 1 of 6)	exon (NM_053277, exon 1 of 6)	581	NM_001317009	54102		NM_053277	ENSG00000159212	CLIC6	CLIC1L	chloride intracellular channel 6	protein-coding
194280	chr6	32639671	32640030	+	0	NA	intron (NM_002122, intron 1 of 4)	intron (NM_002122, intron 1 of 4)	2444	NM_002122	3117		NM_002122	ENSG00000196735	HLA-DQA1	CELIAC1|DQ-A1|DQA1|HLA-DQA|HLA-DQA1*|HLA-DQB1	major histocompatibility complex, class II, DQ alpha 1	protein-coding
97033	chr17	42313851	42314680	+	0	NA	3' UTR (NM_001384992, exon 23 of 23)	3' UTR (NM_001384992, exon 23 of 23)	26209	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
124187	chr19	56163121	56163380	+	0	NA	Intergenic	Intergenic	-12758	NM_033106	85569		NM_033106	ENSG00000197487	GALP	GAL	galanin like peptide	protein-coding
38614	chr11	46334601	46334800	+	0	NA	intron (NM_201532, intron 1 of 30)	intron (NM_201532, intron 1 of 30)	1774	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
55098	chr12	98440001	98440250	+	0	NA	Intergenic	Intergenic	17020	NR_033801	121456		NR_033801	ENSG00000293147	SLC9A7P1	-	solute carrier family 9 member 7 pseudogene 1	pseudo
90677	chr17	1719051	1719150	+	0	NA	intron (NM_001163673, intron 1 of 9)	MER20|DNA|hAT-Charlie	2577	NM_001163673	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
96546	chr17	40364321	40364880	+	0	NA	5' UTR (NM_152219, exon 1 of 1)	5' UTR (NM_152219, exon 1 of 1)	137	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
114906	chr19	13931321	13931580	+	0	NA	TTS (NM_017721)	TTS (NM_017721)	6967	NM_001370095	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
28529	chr10	50431671	50432500	+	0	NA	intron (NM_147156, intron 6 of 10)	intron (NM_147156, intron 6 of 10)	-180569	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
133801	chr2	127804921	127805380	+	0	NA	intron (NM_001006623, intron 1 of 7)	AluJb|SINE|Alu	6021	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
86322	chr16	65690471	65690630	+	0	NA	Intergenic	L1HS|LINE|L1	-114250	NR_027755	283867		NM_001101346	ENSG00000261742	LINC00922	Lnc-LALC	long intergenic non-protein coding RNA 922	ncRNA
38775	chr11	47176121	47178050	+	0	NA	promoter-TSS (NM_001242832)	promoter-TSS (NM_001242832)	40	NM_001242832	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
4004	chr1	18923051	18923150	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	-20301	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
21650	chr1	206679521	206680180	+	0	NA	Intergenic	Intergenic	-5055	NM_032960	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
236225	chrX	65708271	65708630	+	0	NA	intron (NM_002444, intron 1 of 12)	AluSx|SINE|Alu	40796	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
42284	chr11	68328101	68328700	+	0	NA	intron (NM_002335, intron 1 of 22)	intron (NM_002335, intron 1 of 22)	15809	NM_002335	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
129462	chr2	69571101	69571550	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-51154	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
85597	chr16	53516971	53517330	+	0	NA	Intergenic	Intergenic	-13846	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
53041	chr12	57616471	57616830	+	0	NA	intron (NM_182947, intron 14 of 14)	intron (NM_182947, intron 14 of 14)	-2877	NR_166678	65012		NM_133489	ENSG00000293429	SLC26A10P	SLC26A10	solute carrier family 26 member 10, pseudogene	pseudo
159001	chr3	10337321	10337900	+	0	NA	intron (NM_001330611, intron 19 of 21)	intron (NM_001330611, intron 19 of 21)	7381	NR_036084	100422933		NR_036084	ENSG00000264534	MIR378B	-	microRNA 378b	ncRNA
151949	chr22	19121551	19123530	+	0	NA	promoter-TSS (NM_005137)	promoter-TSS (NM_005137)	-86	NM_001173533	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
24584	chr1	245378201	245378600	+	0	NA	intron (NM_018012, intron 3 of 14)	intron (NM_018012, intron 3 of 14)	-143883	NR_151721	111216275		NR_151721	ENSG00000232192	KIF26B-AS1	-	KIF26B antisense RNA 1	ncRNA
195670	chr6	38163621	38164080	+	0	NA	Intergenic	MIRb|SINE|MIR	-317746	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
159334	chr3	13068271	13068680	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	4954	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
140484	chr2	233187171	233187530	+	0	NA	intron (NM_001017915, intron 21 of 26).2	intron (NM_001017915, intron 21 of 26).2	-64221	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
107714	chr18	49761251	49762180	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	51818	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
44627	chr11	108889771	108889930	+	0	NA	intron (NM_004398, intron 16 of 17)	intron (NM_004398, intron 16 of 17)	224781	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
22894	chr1	225847801	225848850	+	0	NA	intron (NM_014698, intron 23 of 24)	intron (NM_014698, intron 23 of 24)	22971	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
124355	chr19	58346951	58348700	+	0	NA	intron (NM_130786, intron 6 of 7)	intron (NM_130786, intron 6 of 7)	-4145	NR_015380	503538		NR_015380	ENSG00000268895	A1BG-AS1	A1BG-AS|A1BGAS|NCRNA00181	A1BG antisense RNA 1	ncRNA
217552	chr8	29344521	29345250	+	0	NA	intron (NM_001394, intron 1 of 3)	AluJb|SINE|Alu	3920	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
228848	chr9	112301421	112302350	+	0	NA	intron (NM_001375918, intron 1 of 13)	L1MD2|LINE|L1	31141	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
175377	chr4	70687751	70689480	+	0	NA	promoter-TSS (NM_020368)	promoter-TSS (NM_020368)	83	NM_020368	57050		NM_020368	ENSG00000132467	UTP3	CRL1|CRLZ1|SAS10	UTP3 small subunit processome component	protein-coding
117261	chr19	19454501	19454700	+	0	NA	intron (NM_001384516, intron 2 of 12)	AluSx3|SINE|Alu	19537	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
236467	chrX	71599921	71600200	+	0	NA	intron (NM_052957, intron 7 of 12)	intron (NM_052957, intron 7 of 12)	18451	NM_001142797	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
106469	chr18	14170851	14171350	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-7997	NR_040113	440482		NM_001029999		ANKRD20A5P	ANKRD20A5	ankyrin repeat domain 20 family member A5, pseudogene	pseudo
100281	chr17	59651151	59651730	+	0	NA	intron (NM_004859, intron 5 of 31)	intron (NM_004859, intron 5 of 31)	31545	NM_004859	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
149000	chr21	14486971	14487130	+	0	NA	intron (NM_001256370, intron 8 of 8)	intron (NM_001256370, intron 8 of 8)	59265	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
221756	chr8	127793871	127794990	+	0	NA	promoter-TSS (NR_003367)	promoter-TSS (NR_003367)	-103	NR_003367	5820		NR_003367	ENSG00000249859	PVT1	LINC00079|MIR1204HG|NCRNA00079|TP53LC09|onco-lncRNA-100	Pvt1 oncogene	ncRNA
165779	chr3	105781671	105782780	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	85366	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
237783	chrX	129783271	129784450	+	0	NA	intron (NM_018990, intron 1 of 7)	intron (NM_018990, intron 1 of 7)	3911	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
86174	chr16	57809971	57811200	+	0	NA	promoter-TSS (NM_001278081)	promoter-TSS (NM_001278081)	-52	NM_001278081	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
114035	chr19	10940871	10941230	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	12239	NM_138358	90580		NM_138358	ENSG00000142444	TIMM29	C19orf52|TIM29	translocase of inner mitochondrial membrane 29	protein-coding
47357	chr12	2053901	2054400	+	0	NA	intron (NM_199460, intron 1 of 49)	CpG	865	NM_199460	775		NM_000719	ENSG00000151067	CACNA1C	CACH2|CACN2|CACNA1C-IT2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|NEDHLSS|TS|TS. LQT8	calcium voltage-gated channel subunit alpha1 C	protein-coding
16129	chr1	153656901	153657550	+	0	NA	Intergenic	AluJb|SINE|Alu	-1429	NR_052020	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
115433	chr19	15313621	15314580	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	18439	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
72734	chr15	38704621	38705080	+	0	NA	Intergenic	Intergenic	8252	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
48496	chr12	9851951	9852250	+	0	NA	TTS (NM_005127)	TTS (NM_005127)	17759	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
6922	chr1	31647101	31647300	+	0	NA	Intergenic	L2|LINE|L2	-2324	NM_012392	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
66288	chr14	61387251	61387600	+	0	NA	intron (NM_006255, intron 1 of 13)	MLT1K|LTR|ERVL-MaLR	65982	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
15386	chr1	150164721	150165180	+	0	NA	intron (NR_135098, intron 2 of 3)	MLT1H2|LTR|ERVL-MaLR	4222	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
107613	chr18	48926401	48926800	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	16207	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
153968	chr22	30365371	30365530	+	0	NA	intron (NM_001017437, intron 2 of 11)	L2b|LINE|L2	-8556	NM_005877	10291		NM_005877	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	splicing factor 3a subunit 1	protein-coding
218189	chr8	41996801	41997000	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-54850	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
109484	chr19	816271	816430	+	0	NA	intron (NM_001270366, intron 2 of 7)	(CACC)n|Simple_repeat|Simple_repeat	2766	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	mir-3187	microRNA 3187	ncRNA
159280	chr3	12968751	12968850	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-1070	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
129575	chr2	70002301	70002700	+	0	NA	intron (NR_033872, intron 7 of 10)	intron (NR_033872, intron 7 of 10)	-40235	NM_152792	151516		NM_152792	ENSG00000244617	ASPRV1	ADLI|MUNO|SASP|SASPase|Taps	aspartic peptidase retroviral like 1	protein-coding
12819	chr1	109984251	109986130	+	0	NA	5' UTR (NM_001242673, exon 1 of 17)	5' UTR (NM_001242673, exon 1 of 17)	425	NM_006621	10768		NM_006621	ENSG00000168710	AHCYL1	DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA	adenosylhomocysteinase like 1	protein-coding
235394	chrX	45083371	45083600	+	0	NA	exon (NM_001291417, exon 22 of 28)	exon (NM_001291417, exon 22 of 28)	117391	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
75153	chr15	64624371	64625430	+	0	NA	intron (NM_015042, intron 3 of 9)	AluSx4|SINE|Alu	78381	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
188718	chr5	157326501	157326700	+	0	NA	intron (NM_014376, intron 18 of 30)	MER115|DNA|hAT-Tip100	19077	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
237684	chrX	124358801	124359680	+	0	NA	intron (NM_002351, intron 1 of 3)	intron (NM_002351, intron 1 of 3)	12677	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
198259	chr6	99514751	99516180	+	0	NA	promoter-TSS (NM_032929)	promoter-TSS (NM_032929)	24	NM_032929	85015		NM_032929	ENSG00000123552	USP45	LCA19	ubiquitin specific peptidase 45	protein-coding
149281	chr21	26846421	26846900	+	0	NA	Intergenic	Intergenic	-1251	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
66939	chr14	65516871	65517030	+	0	NA	intron (NM_004480, intron 2 of 9)	L1MB4|LINE|L1	45848	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
181788	chr5	50849001	50850250	+	0	NA	Intergenic	Intergenic	120562	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
239413	chrY	26408951	26409150	+	0	NA	Intergenic	TAR1|Satellite|telo	680560	NR_002176	474148		NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis expressed transcript, Y-linked 3B	ncRNA
210501	chr7	100177131	100178230	+	0	NA	promoter-TSS (NM_001282716)	promoter-TSS (NM_001282716)	-44	NM_001282716	10734		NM_012447	ENSG00000066923	STAG3	SA3|SPGF61	STAG3 cohesin complex component	protein-coding
100000	chr17	57849351	57850650	+	0	NA	promoter-TSS (NM_016070)	promoter-TSS (NM_016070)	44	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
79257	chr16	452751	452930	+	0	NA	intron (NM_001370401, intron 1 of 14)	AluY|SINE|Alu	-22084	NM_001142272	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
123131	chr19	52009501	52009750	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1395	NM_001321319	284370		NM_198480	ENSG00000197619	ZNF615	-	zinc finger protein 615	protein-coding
220554	chr8	100711951	100712580	+	0	NA	intron (NM_002568, intron 7 of 14)	intron (NM_002568, intron 7 of 14)	-9241	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
45785	chr11	119311051	119311730	+	0	NA	exon (NM_006500, exon 12 of 16)	exon (NM_006500, exon 12 of 16)	1622	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
69053	chr14	91873131	91874400	+	0	NA	intron (NM_001384161, intron 11 of 12)	intron (NM_001384161, intron 11 of 12)	-6229	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
145198	chr20	38889601	38890330	+	0	NA	intron (NM_001172735, intron 3 of 9)	intron (NM_001172735, intron 3 of 9)	-36452	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
118566	chr19	36213201	36213400	+	0	NA	5' UTR (NM_001366189, exon 1 of 6)	5' UTR (NM_001366189, exon 1 of 6)	279	NM_001366189	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
63622	chr14	20634501	20634700	+	0	NA	Intergenic	L1PB2|LINE|L1	7091	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
211119	chr7	102523821	102524430	+	0	NA	Intergenic	Intergenic	-6348	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
18142	chr1	160750151	160750250	+	0	NA	intron (NM_001282594, intron 2 of 5)	intron (NM_001282594, intron 2 of 5)	10953	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
98089	chr17	45588271	45589180	+	0	NA	Intergenic	AluJo|SINE|Alu	13137	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
160878	chr3	33454321	33454580	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14045	NM_014517	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
40074	chr11	62768701	62768900	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2596	NM_006473	10629		NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
153996	chr22	30398121	30398380	+	0	NA	intron (NM_001291932, intron 1 of 10)	intron (NM_001291932, intron 1 of 10)	1232	NM_001291932	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
16097	chr1	153572371	153572780	+	0	NA	Intergenic	Intergenic	-6731	NM_001366407	6273		NM_005978	ENSG00000196754	S100A2	CAN19|S100L	S100 calcium binding protein A2	protein-coding
113916	chr19	10703071	10703230	+	0	NA	intron (NM_031209, intron 3 of 9)	AluSq2|SINE|Alu	1711	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
134811	chr2	148521371	148521530	+	0	NA	Intergenic	Intergenic	-123301	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
26839	chr10	24722451	24723300	+	0	NA	promoter-TSS (NR_160023)	promoter-TSS (NR_160023)	-127	NR_160023	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
236838	chrX	79252371	79252730	+	0	NA	Intergenic	L1PA7|LINE|L1	107862	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
76799	chr15	77029301	77029730	+	0	NA	intron (NR_135552, intron 7 of 11)	intron (NR_135552, intron 7 of 11)	34389	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
23693	chr1	231531801	231532250	+	0	NA	intron (NR_028398, intron 2 of 10)	AluJo|SINE|Alu	3356	NM_005999	7257		NM_005999	ENSG00000116918	TSNAX	C3PO|TRAX	translin associated factor X	protein-coding
183274	chr5	76476021	76476480	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-71159	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
77262	chr15	81323721	81325000	+	0	NA	promoter-TSS (NM_181900)	promoter-TSS (NM_181900)	27	NR_120365	101929655		NR_120365		TMC3-AS1	-	TMC3 antisense RNA 1	ncRNA
134536	chr2	143686371	143687300	+	0	NA	intron (NM_018460, intron 12 of 13)	intron (NM_018460, intron 12 of 13)	-250232	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
151588	chr21	46646651	46647150	+	0	NA	intron (NM_206962, intron 5 of 11)	MLT1A1|LTR|ERVL-MaLR	11226	NM_001242866	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
32254	chr10	101895951	101896050	+	0	NA	intron (NM_024541, intron 23 of 25)	AluSx3|SINE|Alu	-52080	NM_173197	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
174778	chr4	47839001	47839600	+	0	NA	intron (NR_125881, intron 1 of 2)	MIR|SINE|MIR	-1194	NM_001278585	10699		NM_006587	ENSG00000145244	CORIN	ATC2|CMH30|CRN|Lrp4|PEE5|TMPRSS10	corin, serine peptidase	protein-coding
194382	chr6	32987871	32988380	+	0	NA	Intergenic	Intergenic	15041	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
32432	chr10	102503501	102504380	+	0	NA	promoter-TSS (NM_016169)	promoter-TSS (NM_016169)	-32	NM_016169	51684		NM_016169	ENSG00000107882	SUFU	BCNS2|JBTS32|PRO1280|SUFUH|SUFUXL	SUFU negative regulator of hedgehog signaling	protein-coding
186912	chr5	139588901	139589300	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	27761	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
200311	chr6	133026201	133026480	+	0	NA	Intergenic	L1HS|LINE|L1	-61740	NR_026969	285735		NM_001037231	ENSG00000231023	LINC00326	NCRNA00326	long intergenic non-protein coding RNA 326	ncRNA
118598	chr19	36577501	36577900	+	0	NA	non-coding (NR_110706, exon 3 of 3)	non-coding (NR_110706, exon 3 of 3)	-4408	NM_001321351	57711		NM_020951	ENSG00000186020	ZNF529	-	zinc finger protein 529	protein-coding
158518	chr3	3150321	3150930	+	0	NA	non-coding (NR_159934, exon 10 of 10)	non-coding (NR_159934, exon 10 of 10)	23685	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
145166	chr20	38851721	38852250	+	0	NA	intron (NM_001172735, intron 2 of 9)	AluJb|SINE|Alu	46288	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
78173	chr15	90529301	90531080	+	0	NA	exon (NM_022769, exon 1 of 15)	exon (NM_022769, exon 1 of 15)	267	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
186283	chr5	134548351	134548650	+	0	NA	intron (NM_001289985, intron 3 of 11)	intron (NM_001289985, intron 3 of 11)	22392	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
31921	chr10	100520771	100520930	+	0	NA	promoter-TSS (NM_015490)	promoter-TSS (NM_015490)	-989	NM_015490	25956		NM_015490	ENSG00000075826	SEC31B	SEC31B-1|SEC31L2	SEC31 homolog B, COPII coat complex component	protein-coding
35929	chr11	2447771	2448300	+	0	NA	intron (NM_000218, intron 1 of 15)	intron (NM_000218, intron 1 of 15)	3027	NM_000218	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
77591	chr15	85240251	85240430	+	0	NA	promoter-TSS (NM_001310153)	promoter-TSS (NM_001310153)	-11	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
44974	chr11	116889971	116890430	+	0	NA	intron (NM_001281748, intron 7 of 24)	intron (NM_001281748, intron 7 of 24)	-52250	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
62994	chr13	112309671	112310480	+	0	NA	Intergenic	Intergenic	-3392	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
1832	chr1	6251151	6251480	+	0	NA	intron (NM_207370, intron 4 of 5)	intron (NM_207370, intron 4 of 5)	7136	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
27169	chr10	28531901	28534300	+	0	NA	promoter-TSS (NR_033805)	promoter-TSS (NR_033805)	-18	NM_016628	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
170440	chr3	185903221	185903780	+	0	NA	Intergenic	AluSp|SINE|Alu	34514	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
143641	chr20	31850601	31850800	+	0	NA	intron (NM_001320479, intron 6 of 9)	intron (NM_001320479, intron 6 of 9)	-5096	NM_004118	2307		NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
219390	chr8	70534351	70535030	+	0	NA	Intergenic	Intergenic	63556	NR_110653	101926892		NR_110653	ENSG00000253967	LINC03020	-	long intergenic non-protein coding RNA 3020	ncRNA
193011	chr6	28259071	28259430	+	0	NA	promoter-TSS (NM_001304506)	promoter-TSS (NM_001304506)	-39	NM_001304506	387032		NM_019110	ENSG00000187626	ZKSCAN4	P1P373C6|ZNF307|ZNF427|ZSCAN36	zinc finger with KRAB and SCAN domains 4	protein-coding
207730	chr7	48049951	48050130	+	0	NA	intron (NM_001267866, intron 5 of 6)	intron (NM_001267866, intron 5 of 6)	14497	NM_001267866	136288		NM_001100159	ENSG00000164746	C7orf57	-	chromosome 7 open reading frame 57	protein-coding
90808	chr17	2250551	2251430	+	0	NA	intron (NM_017575, intron 8 of 18)	L2c|LINE|L2	-14143	NM_001256828	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
39737	chr11	61812551	61812850	+	0	NA	intron (NM_013402, intron 2 of 11)	intron (NM_013402, intron 2 of 11)	2540	NR_031729	100302263		NR_031729	ENSG00000284416	MIR1908	MIRN1908|hsa-mir-1908|mir-1908	microRNA 1908	ncRNA
38880	chr11	47377601	47377880	+	0	NA	intron (NM_001080547, intron 1 of 4)	intron (NM_001080547, intron 1 of 4)	807	NM_003120	6688		NM_003120	ENSG00000066336	SPI1	AGM10|OF|PU.1|SFPI1|SPI-1|SPI-A	Spi-1 proto-oncogene	protein-coding
163207	chr3	50239671	50239830	+	0	NA	intron (NM_001282618, intron 1 of 7)	intron (NM_001282618, intron 1 of 7)	3546	NM_001282618	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
54529	chr12	92124551	92125600	+	0	NA	intron (NR_132341, intron 1 of 4)	AluSz|SINE|Alu	16638	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
138065	chr2	201671771	201672150	+	0	NA	intron (NM_033066, intron 11 of 21)	L1PA7|LINE|L1	26684	NM_033066	58538		NM_033066	ENSG00000082126	MPP4	ALS2CR5|DLG6	MAGUK p55 scaffold protein 4	protein-coding
49362	chr12	22331051	22331350	+	0	NA	intron (NM_001304450, intron 1 of 3)	intron (NM_001304450, intron 1 of 3)	3514	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
122857	chr19	50481971	50482130	+	0	NA	intron (NM_175063, intron 7 of 7)	intron (NM_175063, intron 7 of 7)	-5202	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
199721	chr6	125732571	125732730	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-16982	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
212880	chr7	130874021	130874550	+	0	NA	Intergenic	Intergenic	2525	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
63275	chr13	113961721	113962350	+	0	NA	intron (NM_001365455, intron 6 of 6)	intron (NM_001365455, intron 6 of 6)	12041	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
90101	chr16	90046621	90046930	+	0	NA	intron (NR_027336, intron 2 of 3)	intron (NR_027336, intron 2 of 3)	850	NR_027335	100130015		NR_027335	ENSG00000290738	URAHP	URAH	urate (hydroxyiso-) hydrolase, pseudogene	pseudo
205293	chr7	10965601	10965800	+	0	NA	Intergenic	L1PA6|LINE|L1	-8172	NM_014660	9678		NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
175520	chr4	74370821	74371100	+	0	NA	intron (NM_001432, intron 1 of 4)	MER20|DNA|hAT-Charlie	5815	NM_001432	2069		NM_001432	ENSG00000124882	EREG	EPR|ER|Ep	epiregulin	protein-coding
71840	chr15	22219851	22220500	+	0	NA	Intergenic	AluSz|SINE|Alu	5154	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
89394	chr16	88809571	88810030	+	0	NA	TTS (NM_030928)	TTS (NM_030928)	2128	NM_000485	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
153640	chr22	28781951	28782300	+	0	NA	intron (NM_173510, intron 3 of 4)	AluJb|SINE|Alu	8988	NM_001284265	150275		NM_173510	ENSG00000159873	CCDC117	dJ366L4.1	coiled-coil domain containing 117	protein-coding
9866	chr1	54298171	54299400	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	62342	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
125459	chr2	12219701	12219980	+	0	NA	intron (NR_110196, intron 3 of 5)	MLT1A0|LTR|ERVL-MaLR	20710	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
5153	chr1	24914251	24914830	+	0	NA	intron (NM_001031680, intron 4 of 5)	intron (NM_001031680, intron 4 of 5)	4876	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
150268	chr21	41770751	41771050	+	0	NA	Intergenic	L2|LINE|L2	-3848	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
82852	chr16	21516751	21517300	+	0	NA	TTS (NR_002594)	TTS (NR_002594)	3419	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
83332	chr16	24920371	24920730	+	0	NA	intron (NM_018054, intron 18 of 18)	intron (NM_018054, intron 18 of 18)	74319	NM_052944								
25047	chr10	3771951	3772050	+	0	NA	Intergenic	L1PA2|LINE|L1	13209	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
112304	chr19	5876651	5877350	+	0	NA	Intergenic	Intergenic	-6460	NM_002034	2527		NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding
195999	chr6	42000071	42000730	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluYc3|SINE|Alu	48494	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
180038	chr5	1062471	1062630	+	0	NA	TTS (NR_039778)	TTS (NR_039778)	424	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
122351	chr19	49327601	49328400	+	0	NA	Intergenic	L2a|LINE|L2	-2809	NM_014037	28968		NM_014037	ENSG00000063127	SLC6A16	NT5|NTT5	solute carrier family 6 member 16	protein-coding
108352	chr18	67440371	67440530	+	0	NA	Intergenic	Intergenic	-76096	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
113662	chr19	10384451	10384550	+	0	NA	Intergenic	AluJb|SINE|Alu	-3928	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
239295	chrY	14523801	14524000	+	0	NA	promoter-TSS (NM_001365584)	promoter-TSS (NM_001365584)	154	NM_014893	22829		NM_014893	ENSG00000165246	NLGN4Y	HNL4Y	neuroligin 4 Y-linked	protein-coding
112031	chr19	5085971	5086930	+	0	NA	intron (NM_001370093, intron 9 of 11)	intron (NM_001370093, intron 9 of 11)	117337	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
202530	chr6	158622571	158622730	+	0	NA	intron (NR_164859, intron 10 of 16)	MER44D|DNA|TcMar-Tigger	12943	NR_106981	102465694		NR_106981	ENSG00000278571	MIR7161	hsa-mir-7161	microRNA 7161	ncRNA
66106	chr14	59918871	59919850	+	0	NA	promoter-TSS (NM_001355272)	promoter-TSS (NM_001355272)	-353	NR_075071	341883		NM_198499	ENSG00000131951	LRRC9	-	leucine rich repeat containing 9	protein-coding
12443	chr1	107529731	107529850	+	0	NA	Intergenic	Intergenic	158709	NM_001079874	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
161424	chr3	41751621	41751880	+	0	NA	intron (NM_017886, intron 22 of 36)	L2a|LINE|L2	210353	NM_017886	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
93385	chr17	18257971	18259230	+	0	NA	5' UTR (NM_001256264, exon 1 of 30)	5' UTR (NM_001256264, exon 1 of 30)	138	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
62068	chr13	94312351	94313180	+	0	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	-124774	NR_046535	100873972		NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
170054	chr3	182802251	182802550	+	0	NA	intron (NM_014616, intron 1 of 29)	L2a|LINE|L2	8896	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
1	chr1	10021	10650	+	0	NA	Intergenic	(TAACCC)n|Simple_repeat|Simple_repeat	-1539	NR_046018	100287102		NR_046018	ENSG00000290825	DDX11L1	-	DEAD/H-box helicase 11 like 1 (pseudogene)	pseudo
27367	chr10	30751751	30752200	+	0	NA	Intergenic	Intergenic	28756	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
17530	chr1	156776921	156777300	+	0	NA	intron (NM_005973, intron 1 of 6)	MIRc|SINE|MIR	9575	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
186666	chr5	138641651	138642600	+	0	NA	Intergenic	Intergenic	-66724	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
63755	chr14	21240721	21241630	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluSg7|SINE|Alu	28267	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
46916	chr11	134246171	134246530	+	0	NA	3' UTR (NM_052875, exon 6 of 6)	3' UTR (NM_052875, exon 6 of 6)	7002	NM_014174	29087		NM_014174	ENSG00000151500	THYN1	HSPC144|MDS012|MY105|THY28|THY28KD	thymocyte nuclear protein 1	protein-coding
136208	chr2	174574871	174575500	+	0	NA	intron (NM_001375837, intron 4 of 4)	intron (NM_001375837, intron 4 of 4)	-17113	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
48285	chr12	8914171	8915530	+	0	NA	intron (NM_004426, intron 1 of 14)	CpG	341	NM_004426	1911		NM_004426	ENSG00000111752	PHC1	EDR1|HPH1|MCPH11|RAE28	polyhomeotic homolog 1	protein-coding
27678	chr10	33111551	33111850	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	5107	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
32774	chr10	104340121	104340380	+	0	NA	Intergenic	L2c|LINE|L2	-1785	NM_001272013	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
99198	chr17	49509401	49509600	+	0	NA	intron (NM_002507, intron 3 of 5)	intron (NM_002507, intron 3 of 5)	-1317	NR_106751	102465141		NR_106751	ENSG00000277478	MIR6165	hsa-mir-6165	microRNA 6165	ncRNA
50686	chr12	48863301	48863600	+	0	NA	intron (NM_014470, intron 2 of 4)	intron (NM_014470, intron 2 of 4)	2420	NM_014470	27289		NM_014470	ENSG00000172602	RND1	ARHS|RHO6|RHOS	Rho family GTPase 1	protein-coding
165746	chr3	105727151	105727250	+	0	NA	intron (NM_001321822, intron 9 of 19)	L1PA7|LINE|L1	140391	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
185065	chr5	116088021	116088400	+	0	NA	intron (NR_146218, intron 2 of 6)	intron (NR_146218, intron 2 of 6)	2748	NM_001308080	51397		NM_016144	ENSG00000145781	COMMD10	PTD002	COMM domain containing 10	protein-coding
207366	chr7	44103151	44103250	+	0	NA	Intergenic	Intergenic	-1145	NM_001129	165		NM_001129	ENSG00000106624	AEBP1	ACLP	AE binding protein 1	protein-coding
210386	chr7	99912271	99912500	+	0	NA	intron (NM_033091, intron 1 of 5)	AluSz6|SINE|Alu	7145	NM_033091	89122		NM_033017	ENSG00000146833	TRIM4	RNF87	tripartite motif containing 4	protein-coding
184463	chr5	100676851	100677150	+	0	NA	Intergenic	Intergenic	139565	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
41593	chr11	66357351	66357450	+	0	NA	intron (NR_135761, intron 1 of 1)	AluY|SINE|Alu	9409	NR_135761	102724064		NR_135761	ENSG00000255468	B4GAT1-DT	-	B4GAT1 divergent transcript	ncRNA
32615	chr10	103652701	103653500	+	0	NA	intron (NM_014631, intron 8 of 13)	L2a|LINE|L2	25115	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
192936	chr6	27761571	27761880	+	0	NA	promoter-TSS (NR_038929)	promoter-TSS (NR_038929)	-19	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
134317	chr2	136051151	136051940	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	64690	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
33580	chr10	119497501	119497700	+	0	NA	Intergenic	Intergenic	38933	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
204319	chr7	2708921	2710100	+	0	NA	intron (NM_001384739, intron 5 of 6)	intron (NM_001384739, intron 5 of 6)	21308	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
155235	chr22	37930001	37930200	+	0	NA	intron (NM_033386, intron 9 of 15)	intron (NM_033386, intron 9 of 15)	23501	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
103981	chr17	80006951	80007580	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	28607	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
130819	chr2	87060871	87061030	+	0	NA	intron (NR_026846, intron 1 of 10)	AluJo|SINE|Alu	15463	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
200817	chr6	137927351	137928340	+	0	NA	Intergenic	Intergenic	17955	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
216222	chr8	12014251	12014350	+	0	NA	Intergenic	Intergenic	-13548	NM_001302695	613211		NM_001033019	ENSG00000205882	DEFB134	-	defensin beta 134	protein-coding
181294	chr5	39787821	39788080	+	0	NA	Intergenic	L1PA2|LINE|L1	-264341	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
99891	chr17	56786951	56787280	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	46805	NM_001085430	339210		NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
99405	chr17	50002071	50002300	+	0	NA	Intergenic	AluJo|SINE|Alu	-6961	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
177332	chr4	109811621	109812050	+	0	NA	Intergenic	Charlie6|DNA|hAT-Charlie	-3675	NM_032993	54433		NM_018983	ENSG00000109534	GAR1	NOLA1	GAR1 ribonucleoprotein	protein-coding
57237	chr12	121553801	121554000	+	0	NA	intron (NM_001005366, intron 4 of 22)	L1MB8|LINE|L1	26346	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
142122	chr20	2689271	2689700	+	0	NA	Intergenic	Intergenic	-3295	NR_138537	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
9451	chr1	50348701	50349000	+	0	NA	Intergenic	Intergenic	74593	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
151976	chr22	19146321	19146880	+	0	NA	TTS (NM_005315)	TTS (NM_005315)	-1949	NM_022719	8220		NM_022719	ENSG00000100056	ESS2	DGCR13|DGCR14|DGS-H|DGS-I|DGSH|DGSI|ES2|ESS-2|Es2el|bis1	ess-2 splicing factor homolog	protein-coding
216197	chr8	11852501	11853250	+	0	NA	intron (NM_001384728, intron 3 of 10)	intron (NM_001384728, intron 3 of 10)	15212	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
69786	chr14	99184371	99185000	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	87512	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
208953	chr7	74181621	74181950	+	0	NA	intron (NM_022170, intron 1 of 6)	AluSg4|SINE|Alu	7429	NM_022170	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
70889	chr14	103877101	103877300	+	0	NA	Intergenic	AluY|SINE|Alu	29479	NR_038436	145216		NR_038436	ENSG00000258735	PPP1R13B-DT	HITT|LINC00637	PPP1R13B divergent transcript	ncRNA
30516	chr10	79345371	79345530	+	0	NA	Intergenic	MIRb|SINE|MIR	-2019	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
204013	chr7	1906101	1906500	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	34271	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
205415	chr7	16643721	16644030	+	0	NA	intron (NM_020319, intron 1 of 9)	AluJo|SINE|Alu	1879	NM_020319	57037		NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
96378	chr17	40106901	40108780	+	0	NA	Intergenic	Intergenic	-7251	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
131954	chr2	99402671	99403030	+	0	NA	intron (NM_001321460, intron 21 of 23)	intron (NM_001321460, intron 21 of 23)	65461	NM_015904	9669		NM_015904	ENSG00000158417	EIF5B	IF2	eukaryotic translation initiation factor 5B	protein-coding
1809	chr1	6208701	6210280	+	0	NA	exon (NM_207396, exon 7 of 18)	exon (NM_207396, exon 7 of 18)	3371	NM_207396	388591		NM_173795	ENSG00000158286	RNF207	C1orf188	ring finger protein 207	protein-coding
142297	chr20	3247701	3247930	+	0	NA	Intergenic	Intergenic	-8625	NR_135000	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
53610	chr12	68119281	68120300	+	0	NA	Intergenic	Intergenic	39950	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
54860	chr12	95502001	95502400	+	0	NA	intron (NM_006838, intron 7 of 10)	AluJb|SINE|Alu	28048	NM_001317183	10988		NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
207398	chr7	44219401	44219600	+	0	NA	3' UTR (NM_001220, exon 24 of 24)	3' UTR (NM_001220, exon 24 of 24)	18522	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
52585	chr12	56180071	56180230	+	0	NA	intron (NM_003075, intron 11 of 27)	AluY|SINE|Alu	9333	NM_001130420	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
219738	chr8	81064151	81064450	+	0	NA	intron (NM_018440, intron 2 of 8)	MER1B|DNA|hAT-Charlie	47768	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
160907	chr3	33940151	33940250	+	0	NA	Intergenic	Intergenic	141570	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
99356	chr17	49889951	49890730	+	0	NA	Intergenic	Intergenic	-42323	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
94743	chr17	30798971	30799330	+	0	NA	intron (NR_073118, intron 1 of 6)	AluSx3|SINE|Alu	25542	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
214509	chr7	150476101	150477330	+	0	NA	intron (NM_175571, intron 4 of 4)	intron (NM_175571, intron 4 of 4)	26085	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
208603	chr7	72950451	72950550	+	0	NA	3' UTR (NM_001257190, exon 16 of 16)	3' UTR (NM_001257190, exon 16 of 16)	4263	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
124967	chr2	8761651	8761830	+	0	NA	intron (NM_001348745, intron 22 of 22)	intron (NM_001348745, intron 22 of 22)	75873	NM_001348740	57498		NM_020738	ENSG00000134313	KIDINS220	ARMS|SINO|VENARG	kinase D interacting substrate 220	protein-coding
134084	chr2	131524551	131524850	+	0	NA	Intergenic	L1M4c|LINE|L1	-2975	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
132815	chr2	110557651	110557830	+	0	NA	intron (NM_032260, intron 8 of 19).2	intron (NM_032260, intron 8 of 19).2	19160	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
205688	chr7	23193371	23193730	+	0	NA	intron (NM_007342, intron 3 of 6)	LTR12C|LTR|ERV1	11502	NM_001370444	11097		NM_007342	ENSG00000136243	NUP42	CG1|NLP-1|NLP1|NLP_1|NUPL2|UIP1|hCG1	nucleoporin 42	protein-coding
79777	chr16	1374951	1375380	+	0	NA	intron (NM_001372107, intron 10 of 14)	CpG	4487	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
55016	chr12	96375971	96376330	+	0	NA	intron (NM_002595, intron 1 of 16)	MER110A|LTR|ERV1	24289	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
131604	chr2	96876521	96877280	+	0	NA	intron (NM_016490, intron 4 of 4)	MIRb|SINE|MIR	-6820	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
54895	chr12	95918371	95918750	+	0	NA	intron (NM_182496, intron 3 of 15)	MER104|DNA|TcMar-Tc2	24054	NM_182496	120935		NM_182496	ENSG00000165972	CCDC38	-	coiled-coil domain containing 38	protein-coding
211060	chr7	102464221	102465980	+	0	NA	promoter-TSS (NM_017621)	promoter-TSS (NM_017621)	116	NM_152892	222229		NM_152892	ENSG00000161036	LRWD1	CENP-33|ORCA	leucine rich repeats and WD repeat domain containing 1	protein-coding
101561	chr17	68035071	68036730	+	0	NA	promoter-TSS (NM_001320611)	promoter-TSS (NM_001320611)	-60	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
54401	chr12	89960121	89960580	+	0	NA	Intergenic	Intergenic	12657	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
73497	chr15	43756201	43756400	+	0	NA	intron (NM_005313, intron 2 of 12)	intron (NM_005313, intron 2 of 12)	9862	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
160657	chr3	31636601	31637280	+	0	NA	3' UTR (NM_178862, exon 16 of 16)	3' UTR (NM_178862, exon 16 of 16)	-67273	NR_049771	100874206		NR_049771	ENSG00000232490	OSBPL10-AS1	-	OSBPL10 antisense RNA 1	ncRNA
9185	chr1	45601521	45602050	+	0	NA	intron (NM_001195193, intron 2 of 12)	AluY|SINE|Alu	17744	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
89024	chr16	88264771	88265930	+	0	NA	Intergenic	Intergenic	71069	NR_110944	101928880		NR_110944	ENSG00000260420	LINC02182	LA16c-444G7.2	long intergenic non-protein coding RNA 2182	ncRNA
225020	chr9	33137751	33138380	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-28883	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
19079	chr1	170531501	170532950	+	0	NA	promoter-TSS (NR_027397)	promoter-TSS (NR_027397)	59	NR_027397	92344		NM_152281	ENSG00000120370	GORAB	GO|NTKLBP1|SCYL1BP1	golgin, RAB6 interacting	protein-coding
59464	chr13	26042501	26042700	+	0	NA	Intergenic	Intergenic	9416	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
144593	chr20	35797671	35798030	+	0	NA	intron (NM_016436, intron 1 of 17)	AluSc|SINE|Alu	25835	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
7391	chr1	32904021	32904280	+	0	NA	Intergenic	Intergenic	-2761	NM_001329723	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
201252	chr6	144093721	144094080	+	0	NA	TTS (NM_031287)	TTS (NM_031287)	1673	NM_031287	83443		NM_031287	ENSG00000169976	SF3B5	SF3b10|Ysf3	splicing factor 3b subunit 5	protein-coding
234287	chrX	13661901	13662530	+	0	NA	intron (NM_001297563, intron 4 of 4)	intron (NM_001297563, intron 4 of 4)	9074	NM_001297563	170082		NM_152634	ENSG00000176896	TCEANC	TCEANC1	transcription elongation factor A N-terminal and central domain containing	protein-coding
104289	chr17	80859371	80859530	+	0	NA	intron (NM_001163034, intron 13 of 29)	intron (NM_001163034, intron 13 of 29)	-53818	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
84116	chr16	29668101	29669300	+	0	NA	3' UTR (NM_001030288, exon 2 of 2)	3' UTR (NM_001030288, exon 2 of 2)	5453	NM_003123	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
150296	chr21	41992301	41992700	+	0	NA	exon (NM_001098403, exon 3 of 4)	exon (NM_001098403, exon 3 of 4)	-16694	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
16327	chr1	154224121	154224850	+	0	NA	intron (NM_001375619, intron 1 of 26)	intron (NM_001375619, intron 1 of 26)	3181	NM_001375631	9898		NM_014847	ENSG00000143569	UBAP2L	NEDLBF|NICE-4|NICE4	ubiquitin associated protein 2 like	protein-coding
47159	chr12	769451	770080	+	0	NA	intron (NM_018979, intron 1 of 27)	MLT1A1|LTR|ERVL-MaLR	16842	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
110216	chr19	1753251	1753900	+	0	NA	promoter-TSS (NM_001080488)	promoter-TSS (NM_001080488)	69	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
38133	chr11	35282651	35282750	+	0	NA	intron (NM_004171, intron 8 of 10)	intron (NM_004171, intron 8 of 10)	119750	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
78008	chr15	89746651	89747050	+	0	NA	Intergenic	Intergenic	4459	NM_018670	55897		NM_018670	ENSG00000166823	MESP1	bHLHc5	mesoderm posterior bHLH transcription factor 1	protein-coding
196873	chr6	49849601	49849880	+	0	NA	intron (NM_170609, intron 3 of 6)	intron (NM_170609, intron 3 of 6)	16795	NM_001131	167		NM_001131	ENSG00000124812	CRISP1	AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP	cysteine rich secretory protein 1	protein-coding
102514	chr17	75786971	75788100	+	0	NA	intron (NM_001080419, intron 1 of 15)	FLAM_C|SINE|Alu	2696	NR_038131	85451		NM_001080419	ENSG00000132478	UNK	UNKEMPT|ZC3H5|ZC3HDC5	unk zinc finger	protein-coding
29352	chr10	69516351	69516680	+	0	NA	Intergenic	Intergenic	56907	NM_020999	50674		NM_020999	ENSG00000122859	NEUROG3	Atoh5|Math4B|NGN-3|bHLHa7|ngn3	neurogenin 3	protein-coding
72472	chr15	32470021	32470280	+	0	NA	Intergenic	Intergenic	-14516	NM_001277308	728047		NM_001277308	ENSG00000206127	GOLGA8O	-	golgin A8 family member O	protein-coding
135718	chr2	169109601	169110150	+	0	NA	Intergenic	Intergenic	28768	NM_001142271	10170		NM_005771	ENSG00000073737	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4|hRoDH-E2	dehydrogenase/reductase 9	protein-coding
180974	chr5	35781321	35781600	+	0	NA	intron (NM_024867, intron 30 of 36)	intron (NM_024867, intron 30 of 36)	-75431	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
126125	chr2	26067471	26067930	+	0	NA	intron (NM_016131, intron 1 of 5)	BLACKJACK|DNA|hAT-Blackjack	33616	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
195124	chr6	35669121	35669950	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	-4746	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
193884	chr6	31586551	31587230	+	0	NA	promoter-TSS (NM_001166538)	promoter-TSS (NM_001166538)	191	NM_205837	7940		NM_007161	ENSG00000204482	LST1	B144|D6S49E|LST-1	leukocyte specific transcript 1	protein-coding
122678	chr19	49881921	49882450	+	0	NA	intron (NM_024682, intron 6 of 16)	intron (NM_024682, intron 6 of 16)	-3829	NM_001278160	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
28300	chr10	46145421	46145680	+	0	NA	Intergenic	Intergenic	36055	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
232583	chr9	136397301	136398080	+	0	NA	intron (NM_003086, intron 1 of 22)	intron (NM_003086, intron 1 of 22)	747	NM_003086	6621		NM_003086	ENSG00000165684	SNAPC4	NEDRSO|PTFalpha|SNAP190	small nuclear RNA activating complex polypeptide 4	protein-coding
96667	chr17	40803451	40803850	+	0	NA	Intergenic	Intergenic	-3691	NM_181535	162605		NM_181535	ENSG00000173908	KRT28	K25IRS4|KRT25D	keratin 28	protein-coding
186698	chr5	138742121	138742800	+	0	NA	Intergenic	Intergenic	10849	NR_134245	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
217635	chr8	30059751	30061400	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	22489	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
131703	chr2	97743901	97744550	+	0	NA	Intergenic	Intergenic	10925	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
116947	chr19	18852301	18852830	+	0	NA	intron (NM_001297549, intron 6 of 23)	intron (NM_001297549, intron 6 of 23)	20606	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
175871	chr4	80010471	80010630	+	0	NA	intron (NM_001145794, intron 11 of 15)	intron (NM_001145794, intron 11 of 15)	62679	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
212752	chr7	129923651	129923950	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	29160	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
147242	chr20	57414921	57415400	+	0	NA	Intergenic	Intergenic	-22104	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
208704	chr7	73293451	73293850	+	0	NA	Intergenic	Intergenic	15176	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
194701	chr6	33699271	33699630	+	0	NA	intron (NM_032340, intron 3 of 3)	intron (NM_032340, intron 3 of 3)	1322	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
128109	chr2	48131771	48132180	+	0	NA	Intergenic	Intergenic	-182324	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
13976	chr1	120556901	120557130	+	0	NA	intron (NR_144516, intron 8 of 43)	intron (NR_144516, intron 8 of 43)	-1670	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
209451	chr7	76444751	76444850	+	0	NA	Intergenic	Intergenic	-16855	NM_020892	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
84323	chr16	30166001	30166500	+	0	NA	Intergenic	AluSx|SINE|Alu	-17160	NM_001193333	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
71515	chr14	106129151	106129700	+	0	NA	Intergenic	Intergenic	-157156	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
158740	chr3	8987621	8988180	+	0	NA	intron (NM_014850, intron 21 of 21)	intron (NM_014850, intron 21 of 21)	-24428	NM_020165	56852		NM_020165	ENSG00000070950	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
84475	chr16	30475071	30475730	+	0	NA	exon (NM_001114380, exon 3 of 29)	exon (NM_001114380, exon 3 of 29)	2658	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
82918	chr16	21801551	21802680	+	0	NA	intron (NM_001301064, intron 10 of 12)	AluSx1|SINE|Alu	17059	NR_003370	730092		NR_003370		RRN3P1	-	RRN3 pseudogene 1	pseudo
30712	chr10	80727951	80728050	+	0	NA	Intergenic	L1PA2|LINE|L1	78203	NR_155749	105378386		NR_155749	ENSG00000231082	LINC02655	-	long intergenic non-protein coding RNA 2655	ncRNA
230059	chr9	127422201	127422830	+	0	NA	Intergenic	Intergenic	-1859	NM_001286696	7633		NM_007135	ENSG00000196152	ZNF79	pT7	zinc finger protein 79	protein-coding
100057	chr17	58112801	58113430	+	0	NA	Intergenic	L2b|LINE|L2	29696	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
140275	chr2	232323871	232324430	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-54601	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
69582	chr14	97179601	97179800	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	24843	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
137901	chr2	200861221	200861680	+	0	NA	exon (NM_004071, exon 3 of 13)	exon (NM_004071, exon 3 of 13)	3111	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
181972	chr5	55141651	55142350	+	0	NA	intron (NM_152623, intron 4 of 11)	intron (NM_152623, intron 4 of 11)	-18171	NR_131338	493869		NM_001008397	ENSG00000164294	GPX8	EPLA847|GPx-8|GSHPx-8|UNQ847	glutathione peroxidase 8 (putative)	protein-coding
227060	chr9	84002371	84002680	+	0	NA	exon (NM_024945, exon 3 of 3)	exon (NM_024945, exon 3 of 3)	21720	NM_001358291	80010		NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75	RecQ mediated genome instability 1	protein-coding
188273	chr5	151099121	151099380	+	0	NA	Intergenic	Intergenic	-11565	NM_001252390	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
69318	chr14	93204401	93204800	+	0	NA	intron (NM_032490, intron 1 of 1)	L1MB7|LINE|L1	-2456	NR_038150	55148		NM_175748	ENSG00000012963	UBR7	C14orf130|LICAS	ubiquitin protein ligase E3 component n-recognin 7	protein-coding
120581	chr19	45000721	45001500	+	0	NA	promoter-TSS (NM_006509)	promoter-TSS (NM_006509)	-354	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
87653	chr16	74577151	74577450	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluSq2|SINE|Alu	29814	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
25110	chr10	3950601	3951300	+	0	NA	Intergenic	Intergenic	-40210	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
148741	chr21	7480201	7481350	+	0	NA	Intergenic	Intergenic	34571	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
49872	chr12	38316271	38317430	+	0	NA	promoter-TSS (NM_001308340)	promoter-TSS (NM_001308340)	76	NM_001013620	144245		NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10 alpha-1,2-glucosyltransferase B	protein-coding
210628	chr7	100448801	100449550	+	0	NA	Intergenic	Intergenic	-12678	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
56279	chr12	112127421	112127880	+	0	NA	intron (NM_001143906, intron 1 of 11)	AluJb|SINE|Alu	2090	NM_006700	10906		NM_006700	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
137651	chr2	197425071	197425600	+	0	NA	intron (NM_001005526, intron 1 of 4)	AluSq2|SINE|Alu	9693	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
195977	chr6	41967601	41968200	+	0	NA	intron (NM_001136017, intron 1 of 4)	L3b|LINE|CR1	-26052	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
197164	chr6	59595901	59596300	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1634654	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
38705	chr11	46632521	46632780	+	0	NA	intron (NM_001346351, intron 3 of 17)	intron (NM_001346351, intron 3 of 17)	15097	NM_001346311	9776		NM_014741	ENSG00000175224	ATG13	KIAA0652|PARATARG8	autophagy related 13	protein-coding
180127	chr5	1318301	1319000	+	0	NA	intron (NM_030782, intron 16 of 16)	intron (NM_030782, intron 16 of 16)	-9273	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
173156	chr4	6682751	6683630	+	0	NA	Intergenic	Intergenic	7329	NR_147207	339988		NR_147207	ENSG00000246526	LINC02481	LINC002481	long intergenic non-protein coding RNA 2481	ncRNA
130952	chr2	87514921	87515750	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	45385	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
24543	chr1	244854901	244855100	+	0	NA	promoter-TSS (NR_132782)	promoter-TSS (NR_132782)	-783	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
90607	chr17	1631171	1631330	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2416	NM_152346	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
86921	chr16	68082651	68083300	+	0	NA	Intergenic	Intergenic	-2395	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
156662	chr22	41644451	41644550	+	0	NA	intron (NM_001288976, intron 6 of 12)	AluSx|SINE|Alu	23205	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
109275	chr19	542201	542630	+	0	NA	TTS (NM_004359)	TTS (NM_004359)	-1638	NM_005317	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
149057	chr21	15170651	15170950	+	0	NA	Intergenic	Intergenic	-105800	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
228438	chr9	99829471	99829630	+	0	NA	intron (NM_173200, intron 4 of 8)	MIRb|SINE|MIR	7665	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
221635	chr8	125912871	125913480	+	0	NA	Intergenic	Intergenic	38022	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
130602	chr2	85887501	85888300	+	0	NA	promoter-TSS (NM_001354238)	promoter-TSS (NM_001354238)	-351	NM_001354238	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
161209	chr3	39173301	39173500	+	0	NA	Intergenic	Intergenic	-18759	NM_001320560	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
32930	chr10	110269371	110269900	+	0	NA	intron (NM_005962, intron 3 of 5)	intron (NM_005962, intron 3 of 5)	35285	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
200254	chr6	132487601	132487800	+	0	NA	intron (NR_137169, intron 2 of 8)	L1ME1|LINE|L1	25083	NM_001326578	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
115843	chr19	16521901	16522430	+	0	NA	TTS (NM_032207)	TTS (NM_032207)	20272	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
212556	chr7	128869101	128870450	+	0	NA	3' UTR (NM_001195150, exon 2 of 2)	3' UTR (NM_001195150, exon 2 of 2)	3445	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
170830	chr3	190169371	190169530	+	0	NA	Intergenic	Intergenic	-47013	NM_001134418	55214		NM_018192	ENSG00000090530	P3H2	LEPREL1|MCVD|MLAT4	prolyl 3-hydroxylase 2	protein-coding
106745	chr18	23553951	23554250	+	0	NA	intron (NM_000271, intron 9 of 24)	L2a|LINE|L2	32406	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
44828	chr11	114058971	114060100	+	0	NA	promoter-TSS (NM_001018011)	promoter-TSS (NM_001018011)	-176	NM_001354750	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
70414	chr14	102016821	102017550	+	0	NA	exon (NM_001376, exon 39 of 78)	exon (NM_001376, exon 39 of 78)	52612	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
30224	chr10	74913071	74913850	+	0	NA	non-coding (NR_134476, exon 1 of 2)	non-coding (NR_134476, exon 1 of 2)	674	NR_134476								
172491	chr4	2245071	2245980	+	0	NA	Intergenic	Intergenic	-3404	NM_024511	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
107155	chr18	35266921	35268430	+	0	NA	5' UTR (NM_001166012, exon 2 of 5)	5' UTR (NM_001166012, exon 2 of 5)	22554	NM_001112734	100101467		NM_001112734	ENSG00000186814	ZSCAN30	ZNF-WYM|ZNF397OS|ZNF917	zinc finger and SCAN domain containing 30	protein-coding
183485	chr5	79265521	79265980	+	0	NA	intron (NM_152405, intron 1 of 10)	intron (NM_152405, intron 1 of 10)	29619	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
194639	chr6	33584471	33584800	+	0	NA	intron (NR_028361, intron 1 of 5)	intron (NR_028361, intron 1 of 5)	936	NR_028361	449520		NM_001005478	ENSG00000293518	GGNBP1	-	gametogenetin binding protein 1 (pseudogene)	pseudo
87334	chr16	70293001	70293400	+	0	NA	intron (NM_001257174, intron 1 of 9)	AluJb|SINE|Alu	-1577	NM_001363938	11269		NM_007242	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD-box helicase 19B	protein-coding
164730	chr3	68997851	68998430	+	0	NA	intron (NM_173654, intron 9 of 14)	intron (NM_173654, intron 9 of 14)	15544	NR_103826	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
141995	chr20	1434721	1435320	+	0	NA	Intergenic	MER66C|LTR|ERV1	32672	NM_018839	55968		NM_016143	ENSG00000088833	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 cofactor	protein-coding
2471	chr1	9660521	9660850	+	0	NA	intron (NM_005026, intron 1 of 23)	MER21-int|LTR|ERVL	-6099	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
180292	chr5	3886451	3886750	+	0	NA	Intergenic	Intergenic	290768	NM_024337	79192		NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding
79531	chr16	817321	818000	+	0	NA	Intergenic	CpG	12217	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
44121	chr11	96055921	96056180	+	0	NA	intron (NM_032427, intron 2 of 4)	MIR3|SINE|MIR	-131943	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
172760	chr4	2862721	2863130	+	0	NA	intron (NM_001354754, intron 2 of 15)	intron (NM_001354754, intron 2 of 15)	18775	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
53935	chr12	71759271	71759650	+	0	NA	intron (NM_014999, intron 1 of 6)	intron (NM_014999, intron 1 of 6)	4597	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
153947	chr22	30345421	30345830	+	0	NA	intron (NM_005877, intron 3 of 15)	MIRc|SINE|MIR	-10999	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
60166	chr13	40153501	40153880	+	0	NA	Intergenic	Intergenic	-28119	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
122800	chr19	50363021	50363300	+	0	NA	intron (NM_004851, intron 1 of 8)	intron (NM_004851, intron 1 of 8)	2479	NM_004851	9476		NM_004851	ENSG00000131400	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
183618	chr5	80219671	80220030	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	36198	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
37797	chr11	32586321	32586850	+	0	NA	intron (NM_001307929, intron 1 of 7)	intron (NM_001307929, intron 1 of 7)	2754	NM_006360	10480		NM_006360	ENSG00000149100	EIF3M	B5|GA17|PCID1|TANGO7|hfl-B5	eukaryotic translation initiation factor 3 subunit M	protein-coding
163250	chr3	50279771	50280130	+	0	NA	intron (NM_153215, intron 1 of 3)	AluSg7|SINE|Alu	863	NM_001304385	132228		NM_153215	ENSG00000179564	LSMEM2	C3orf45	leucine rich single-pass membrane protein 2	protein-coding
53457	chr12	65741151	65742100	+	0	NA	Intergenic	(GGCGG)n|Simple_repeat|Simple_repeat	-82835	NM_001300918	8091		NM_003483	ENSG00000149948	HMGA2	BABL|HMGI-C|HMGIC|LIPO|SRS5|STQTL9	high mobility group AT-hook 2	protein-coding
230353	chr9	128033001	128033950	+	0	NA	Intergenic	AluSx|SINE|Alu	33845	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
41469	chr11	66133171	66133530	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	63078	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
74855	chr15	63529851	63530530	+	0	NA	intron (NR_046341, intron 2 of 15)	intron (NR_046341, intron 2 of 15)	25597	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
213117	chr7	131325451	131326030	+	0	NA	intron (NR_125364, intron 2 of 5)	L2a|LINE|L2	2039	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
45461	chr11	118529521	118529780	+	0	NA	promoter-TSS (NM_001346098)	promoter-TSS (NM_001346098)	-767	NM_001346098	143941		NM_001080441	ENSG00000172425	TTC36	HBP21	tetratricopeptide repeat domain 36	protein-coding
205326	chr7	12490051	12490350	+	0	NA	Intergenic	MIRb|SINE|MIR	-6229	NR_136261	102725191		NM_001386512	ENSG00000226690	C7orf78	-	chromosome 7 open reading frame 78	protein-coding
187025	chr5	139787351	139788800	+	0	NA	Intergenic	CpG	-7733	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
216179	chr8	11802101	11803730	+	0	NA	promoter-TSS (NM_001287748)	promoter-TSS (NM_001287748)	-129	NM_001287747	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
165542	chr3	100852971	100853130	+	0	NA	intron (NM_001365642, intron 13 of 47)	intron (NM_001365642, intron 13 of 47)	140371	NM_001349332	25890		NM_015429	ENSG00000154175	ABI3BP	NESHBP|TARSH	ABI family member 3 binding protein	protein-coding
174982	chr4	49645851	49646650	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	659608	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
137378	chr2	196191601	196191800	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-20122	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
236448	chrX	71545421	71545800	+	0	NA	intron (NM_181672, intron 4 of 21)	intron (NM_181672, intron 4 of 21)	12506	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
154021	chr22	30438021	30438750	+	0	NA	Intergenic	Intergenic	5699	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
31174	chr10	91171601	91171800	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	8688	NM_001257101	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
228867	chr9	112355321	112355580	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-21786	NM_001163790	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
174213	chr4	37682721	37683830	+	0	NA	intron (NM_001085400, intron 1 of 6)	MIRb|SINE|MIR	3101	NM_001085399	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
142279	chr20	3207201	3207700	+	0	NA	Intergenic	AluSx|SINE|Alu	-1226	NM_001324238	3704		NM_033453	ENSG00000125877	ITPA	C20orf37|DEE35|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3	inosine triphosphatase	protein-coding
18218	chr1	161016301	161017700	+	0	NA	intron (NM_001382733, intron 1 of 9)	LTR5_Hs|LTR|ERVK	4152	NM_001348091	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
232055	chr9	133468371	133468730	+	0	NA	intron (NM_001242370, intron 4 of 4)	intron (NM_001242370, intron 4 of 4)	8572	NM_017586	11094		NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
171052	chr3	195258701	195258900	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	-10880	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
58645	chr12	132514371	132515030	+	0	NA	intron (NM_001382740, intron 2 of 11)	intron (NM_001382740, intron 2 of 11)	9294	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
45800	chr11	119334121	119335430	+	0	NA	5' UTR (NM_032015, exon 1 of 1)	5' UTR (NM_032015, exon 1 of 1)	248	NM_032015	79102		NM_032015	ENSG00000173456	RNF26	-	ring finger protein 26	protein-coding
160422	chr3	28291731	28292150	+	0	NA	intron (NM_001331189, intron 3 of 4)	L1M7|LINE|L1	50321	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
144020	chr20	33446021	33446280	+	0	NA	Intergenic	AluJr|SINE|Alu	-2387	NM_003098	6640		NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	syntrophin alpha 1	protein-coding
225593	chr9	36141501	36142150	+	0	NA	intron (NM_001287014, intron 1 of 1)	AluJr|SINE|Alu	5040	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
40246	chr11	63639251	63639880	+	0	NA	intron (NM_015459, intron 8 of 12)	AluJr|SINE|Alu	-25096	NM_001128203	11145		NM_007069	ENSG00000176485	PLAAT3	AdPLA|FPLD9|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3	phospholipase A and acyltransferase 3	protein-coding
197505	chr6	75620101	75621180	+	0	NA	intron (NM_015571, intron 1 of 23)	MLT1A0|LTR|ERVL-MaLR	18760	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
172517	chr4	2271021	2271280	+	0	NA	intron (NM_020972, intron 12 of 12)	intron (NM_020972, intron 12 of 12)	-9041	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
178135	chr4	142265601	142266050	+	0	NA	intron (NM_001385452, intron 5 of 21)	intron (NM_001385452, intron 5 of 21)	40007	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
9643	chr1	52600701	52600900	+	0	NA	Intergenic	L2b|LINE|L2	-1571	NM_015696	2882		NM_015696	ENSG00000116157	GPX7	CL683|GPX6|GPx-7|GSHPx-7|NPGPx	glutathione peroxidase 7	protein-coding
104853	chr17	81845051	81845400	+	0	NA	exon (NM_000918, exon 10 of 11)	exon (NM_000918, exon 10 of 11)	-10175	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
188540	chr5	156401471	156401630	+	0	NA	intron (NM_000337, intron 3 of 8)	intron (NM_000337, intron 3 of 8)	74386	NM_172244	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
120306	chr19	43477551	43477850	+	0	NA	intron (NM_198850, intron 15 of 15)	AluSg|SINE|Alu	-12092	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
133252	chr2	113311201	113311400	+	0	NA	Intergenic	Tigger19a|DNA|TcMar-Tigger	-32379	NM_003466	7849		NM_003466	ENSG00000125618	PAX8	PAX-8	paired box 8	protein-coding
80993	chr16	4032621	4033080	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	-82406	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
59297	chr13	24264871	24265900	+	0	NA	intron (NM_153023, intron 3 of 11)	intron (NM_153023, intron 3 of 11)	-5302	NM_001286794	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
197932	chr6	89815271	89815830	+	0	NA	intron (NM_014611, intron 1 of 101)	intron (NM_014611, intron 1 of 101)	4244	NM_014611	23195		NM_014611	ENSG00000112159	MDN1	Rea1	midasin AAA ATPase 1	protein-coding
202362	chr6	157762251	157762350	+	0	NA	Intergenic	Intergenic	-60946	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
228361	chr9	99060471	99060630	+	0	NA	intron (NM_001855, intron 36 of 41)	AluJb|SINE|Alu	-44563	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233561	chrX	278751	279400	+	0	NA	intron (NM_001370371, intron 1 of 6)	LTR7C|LTR|ERV1	-2306	NR_163416	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
116968	chr19	18868901	18869300	+	0	NA	TTS (NM_002911)	TTS (NM_002911)	27058	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
97831	chr17	44912501	44913100	+	0	NA	intron (NM_001363846, intron 4 of 9)	intron (NM_001363846, intron 4 of 9)	2700	NM_001131019	2670		NM_002055	ENSG00000131095	GFAP	ALXDRD	glial fibrillary acidic protein	protein-coding
11686	chr1	91842251	91842950	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	43551	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
73264	chr15	41831201	41832050	+	0	NA	intron (NM_005090, intron 1 of 24)	MER52A|LTR|ERV1	3533	NM_001114632	100137047		NM_001114632	ENSG00000243789	JMJD7	-	jumonji domain containing 7	protein-coding
72970	chr15	40566651	40566750	+	0	NA	Intergenic	AluJb|SINE|Alu	-1658	NM_001382437	90416		NM_052849	ENSG00000128891	CCDC32	C15orf57|CFNDS	coiled-coil domain containing 32	protein-coding
80822	chr16	3472851	3473580	+	0	NA	intron (NM_001317095, intron 1 of 5)	AluSz|SINE|Alu	12254	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
105374	chr17	82697551	82699780	+	0	NA	promoter-TSS (NM_006822)	promoter-TSS (NM_006822)	33	NM_006822	10966		NM_006822	ENSG00000141542	RAB40B	RAR|SEC4L	RAB40B, member RAS oncogene family	protein-coding
203604	chr7	939171	939330	+	0	NA	intron (NM_001284308, intron 1 of 10)	AluSq2|SINE|Alu	6566	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
77986	chr15	89418271	89418780	+	0	NA	intron (NR_160724, intron 2 of 2)	intron (NR_160724, intron 2 of 2)	18354	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
134732	chr2	144582801	144583000	+	0	NA	Intergenic	Intergenic	-58456	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
222230	chr8	133092051	133093130	+	0	NA	intron (NM_001045556, intron 1 of 8)	MIR|SINE|MIR	10012	NM_001282964	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
97138	chr17	42552651	42552750	+	0	NA	promoter-TSS (NM_000413)	promoter-TSS (NM_000413)	-223	NR_144397	3292		NM_000413	ENSG00000108786	HSD17B1	17-beta-HSD|20-alpha-HSD|E2DH|EDH17B2|EDHB17|HSD17|SDR28C1	hydroxysteroid 17-beta dehydrogenase 1	protein-coding
5267	chr1	25041251	25041550	+	0	NA	Intergenic	L2c|LINE|L2	17897	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
28471	chr10	49441551	49442050	+	0	NA	3' UTR (NM_001346440, exon 21 of 21)	3' UTR (NM_001346440, exon 21 of 21)	-45711	NM_001276451	644168		NM_001080520	ENSG00000165606	DRGX	DRG11|PRRXL1	dorsal root ganglia homeobox	protein-coding
55193	chr12	101407251	101408580	+	0	NA	promoter-TSS (NM_001301068)	promoter-TSS (NM_001301068)	-95	NM_001301068	400		NM_001177	ENSG00000120805	ARL1	ARFL1	ADP ribosylation factor like GTPase 1	protein-coding
147126	chr20	54113121	54113200	+	0	NA	Intergenic	L1MC4|LINE|L1	-42395	NM_003657	8537		NM_003657	ENSG00000064787	BCAS1	AIBC1|NABC1|PMES-2	brain enriched myelin associated protein 1	protein-coding
177717	chr4	122156721	122157580	+	0	NA	intron (NM_001384125, intron 2 of 87)	intron (NM_001384125, intron 2 of 87)	4819	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
224198	chr9	5449621	5452600	+	0	NA	intron (NR_052005, intron 1 of 7)	intron (NR_052005, intron 1 of 7)	568	NM_001314029	29126		NM_014143	ENSG00000120217	CD274	B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1|hPD-L1	CD274 molecule	protein-coding
192705	chr6	26312581	26314550	+	0	NA	Intergenic	Intergenic	-28031	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
167319	chr3	128732751	128733230	+	0	NA	intron (NM_004637, intron 1 of 5)	MamRep605|LTR?|LTR?	6807	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
172336	chr4	1693121	1694250	+	0	NA	exon (NM_001306074, exon 7 of 7)	exon (NM_001306074, exon 7 of 7)	-9372	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
203954	chr7	1554871	1555630	+	0	NA	intron (NM_001097620, intron 2 of 8)	intron (NM_001097620, intron 2 of 8)	955	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
164366	chr3	58173421	58174130	+	0	NA	Intergenic	MIRb|SINE|MIR	-3140	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
150029	chr21	37269001	37269350	+	0	NA	Intergenic	AluSg|SINE|Alu	-1067	NM_001331018	10311		NM_006052	ENSG00000157538	VPS26C	DCRA|DSCR3|DSCRA	VPS26 endosomal protein sorting factor C	protein-coding
39620	chr11	61423051	61423350	+	0	NA	intron (NR_165417, intron 2 of 9)	AluSg|SINE|Alu	6775	NM_024811	79869		NM_024811	ENSG00000149532	CPSF7	CFIm59	cleavage and polyadenylation specific factor 7	protein-coding
67977	chr14	74904501	74904930	+	0	NA	TTS (NR_045209)	TTS (NR_045209)	17727	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
96161	chr17	39687551	39688800	+	0	NA	promoter-TSS (NM_001291733)	promoter-TSS (NM_001291733)	81	NM_001289936	2064		NM_004448	ENSG00000141736	ERBB2	CD340|HER-2|HER-2/neu|HER2|MLN 19|MLN-19|NEU|NGL|TKR1|VSCN2|c-ERB-2|c-ERB2|p185(erbB2)	erb-b2 receptor tyrosine kinase 2	protein-coding
84093	chr16	29620551	29621150	+	0	NA	Intergenic	Intergenic	-7133	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
219529	chr8	75407121	75407380	+	0	NA	promoter-TSS (NM_001330561)	promoter-TSS (NM_001330561)	-399	NM_001330561	3174		NM_004133	ENSG00000164749	HNF4G	NR2A2|NR2A3	hepatocyte nuclear factor 4 gamma	protein-coding
1053	chr1	1895621	1896080	+	0	NA	Intergenic	Intergenic	4670	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
203703	chr7	1042001	1042780	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	-2156	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
198883	chr6	109460221	109461080	+	0	NA	intron (NM_001286613, intron 1 of 24)	intron (NM_001286613, intron 1 of 24)	-4663	NM_001159291	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
177689	chr4	121822671	121823200	+	0	NA	intron (NM_001237, intron 1 of 7)	intron (NM_001237, intron 1 of 7)	948	NM_001237	890		NM_001237	ENSG00000145386	CCNA2	CCN1|CCNA	cyclin A2	protein-coding
143975	chr20	32851501	32851700	+	0	NA	Intergenic	Intergenic	-7323	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
12484	chr1	107942171	107942330	+	0	NA	intron (NM_006113, intron 1 of 26)	MER91A|DNA|hAT-Tip100	-22193	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
222384	chr8	133851201	133851400	+	0	NA	Intergenic	Intergenic	-35196	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
195808	chr6	41147821	41148080	+	0	NA	Intergenic	Intergenic	6399	NM_001271808	340205		NM_178174	ENSG00000161911	TREML1	GLTL1825|PRO3438|TLT-1|TLT1|dJ238O23.3	triggering receptor expressed on myeloid cells like 1	protein-coding
19590	chr1	179365371	179366800	+	0	NA	promoter-TSS (NR_073544)	promoter-TSS (NR_073544)	41	NR_073544	126859		NM_144619	ENSG00000162779	AXDND1	C1orf125	axonemal dynein light chain domain containing 1	protein-coding
124948	chr2	8631451	8631750	+	0	NA	Intergenic	Intergenic	-47808	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
130420	chr2	85348101	85348300	+	0	NA	intron (NM_017750, intron 5 of 10)	intron (NM_017750, intron 5 of 10)	6328	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
175399	chr4	70837721	70838230	+	0	NA	intron (NM_002092, intron 1 of 9)	AluYc|SINE|Alu	1286	NM_001098477	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
179487	chr4	184560221	184560480	+	0	NA	Intergenic	AluYc|SINE|Alu	-22767	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
96868	chr17	42063651	42064530	+	0	NA	intron (NM_001378270, intron 1 of 8)	(CA)n|Simple_repeat|Simple_repeat	-13489	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
95975	chr17	39157521	39157780	+	0	NA	intron (NM_001143968, intron 5 of 5)	AluSp|SINE|Alu	-6013	NM_020405	57125		NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
190631	chr5	181207301	181208580	+	0	NA	Intergenic	Intergenic	-2744	NM_203293	81786		NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
229894	chr9	126519321	126519980	+	0	NA	Intergenic	L1ME4b|LINE|L1	-94278	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
35205	chr11	811751	812280	+	0	NA	TTS (NR_002585)	TTS (NR_002585)	334	NR_002585	619565		NR_002585	ENSG00000199785	SNORA52	ACA52	small nucleolar RNA, H/ACA box 52	snoRNA
177560	chr4	119279421	119279900	+	0	NA	intron (NM_001371398, intron 16 of 16)	L1PA2|LINE|L1	20985	NM_001001701	401152		NM_001001701	ENSG00000164096	C4orf3	ALN|HCVFTP1	chromosome 4 open reading frame 3	protein-coding
135540	chr2	162319721	162320300	+	0	NA	intron (NM_001330266, intron 2 of 8)	intron (NM_001330266, intron 2 of 8)	1028	NM_001330267	25801		NM_012198	ENSG00000115271	GCA	GCL	grancalcin	protein-coding
64633	chr14	31127621	31128850	+	0	NA	intron (NM_015382, intron 25 of 42)	intron (NM_015382, intron 25 of 42)	79558	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
54370	chr12	89756371	89757430	+	0	NA	Intergenic	Intergenic	-47534	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
165797	chr3	105805901	105806930	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	61176	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
4513	chr1	21778301	21778500	+	0	NA	intron (NM_001350166, intron 1 of 26)	L1M4|LINE|L1	4749	NM_001350164	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
191813	chr6	14634921	14635580	+	0	NA	Intergenic	MLT2D|LTR|ERVL	-349796	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
19565	chr1	179129151	179130450	+	0	NA	intron (NM_001136001, intron 2 of 9)	intron (NM_001136001, intron 2 of 9)	13276	NM_001168239	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
98955	chr17	48644821	48645280	+	0	NA	Intergenic	Intergenic	-12491	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
162184	chr3	46996921	46997630	+	0	NA	exon (NM_015175, exon 19 of 54)	exon (NM_015175, exon 19 of 54)	9285	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
186859	chr5	139474151	139474550	+	0	NA	TTS (NM_001365197)	TTS (NM_001365197)	3346	NM_001365197	111064649		NM_001365197	ENSG00000283288	SMIM33	-	small integral membrane protein 33	protein-coding
102963	chr17	76708101	76708400	+	0	NA	intron (NM_001008528, intron 1 of 3)	intron (NM_001008528, intron 1 of 3)	1347	NR_130926	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
196091	chr6	42316551	42317050	+	0	NA	intron (NM_033502, intron 3 of 17)	LTR8B|LTR|ERV1	-98939	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
142246	chr20	3152021	3152730	+	0	NA	intron (NM_021826, intron 1 of 1)	AluSx3|SINE|Alu	7490	NM_014948	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
222017	chr8	130067201	130067400	+	0	NA	intron (NM_001362924, intron 28 of 30)	intron (NM_001362924, intron 28 of 30)	17468	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
217756	chr8	30966421	30967080	+	0	NA	Intergenic	L2a|LINE|L2	-53742	NM_001350162	56154		NM_001350162	ENSG00000133863	TEX15	CT42|SPGF25	testis expressed 15, meiosis and synapsis associated	protein-coding
135273	chr2	159797721	159798380	+	0	NA	intron (NM_001198760, intron 33 of 37)	CpG	158	NM_014880	9936		NM_014880	ENSG00000241399	CD302	BIMLEC|CLEC13A|DCL-1|DCL1	CD302 molecule	protein-coding
71134	chr14	104975721	104976650	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	2189	NM_138420	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
115221	chr19	14498751	14498850	+	0	NA	Intergenic	AluJb|SINE|Alu	-2651	NM_202494	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
221552	chr8	124971171	124971480	+	0	NA	Intergenic	L2c|LINE|L2	-1970	NM_152412	137209		NM_152412	ENSG00000180938	ZNF572	-	zinc finger protein 572	protein-coding
57551	chr12	122197221	122197680	+	0	NA	intron (NM_152759, intron 7 of 11)	AluSq2|SINE|Alu	-6231	NM_001330492	79369		NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
216146	chr8	11498701	11499430	+	0	NA	intron (NM_001330465, intron 1 of 11).2	intron (NM_001330465, intron 1 of 11).2	4678	NM_001330465	640		NM_001715	ENSG00000136573	BLK	MODY11	BLK proto-oncogene, Src family tyrosine kinase	protein-coding
121261	chr19	46692301	46692700	+	0	NA	intron (NM_001079881, intron 11 of 18)	L2b|LINE|L2	16854	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
175093	chr4	54109951	54110250	+	0	NA	Intergenic	Intergenic	9937	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
116640	chr19	18311851	18312630	+	0	NA	intron (NM_001252129, intron 2 of 3)	intron (NM_001252129, intron 2 of 3)	10836	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
174495	chr4	39949701	39950100	+	0	NA	intron (NM_001100399, intron 2 of 32)	L1MB7|LINE|L1	28011	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
64354	chr14	24092071	24092230	+	0	NA	intron (NM_006177, intron 1 of 3).2	intron (NM_006177, intron 1 of 3).2	-2161	NM_001308054	5106		NM_004563	ENSG00000100889	PCK2	PEPCK|PEPCK-M|PEPCK2|mtPCK2	phosphoenolpyruvate carboxykinase 2, mitochondrial	protein-coding
116996	chr19	18895951	18896930	+	0	NA	promoter-TSS (NM_001492)	promoter-TSS (NM_001492)	-282	NM_001492	2657		NM_001492	ENSG00000130283	GDF1	CERS1|CHTD6|DORV|DTGA3|LAG1|LASS1|RAI|UOG1	growth differentiation factor 1	protein-coding
156916	chr22	42281671	42281830	+	0	NA	intron (NM_005650, intron 1 of 5)	intron (NM_005650, intron 1 of 5)	2177	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
122214	chr19	48968821	48969080	+	0	NA	non-coding (NR_027763, exon 15 of 15)	non-coding (NR_027763, exon 15 of 15)	3641	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
124589	chr2	858651	858950	+	0	NA	intron (NR_033880, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	9626	NR_111963	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
21459	chr1	205529001	205530000	+	0	NA	intron (NM_212502, intron 12 of 15)	intron (NM_212502, intron 12 of 15)	24831	NM_212502	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
25451	chr10	6597451	6598030	+	0	NA	Intergenic	L1MA8|LINE|L1	-17094	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
39571	chr11	61135101	61135450	+	0	NA	intron (NM_017966, intron 2 of 4)	intron (NM_017966, intron 2 of 4)	26151	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
160600	chr3	31232151	31232650	+	0	NA	Intergenic	Intergenic	-70613	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
168161	chr3	139388871	139390330	+	0	NA	promoter-TSS (NM_004766)	promoter-TSS (NM_004766)	47	NM_004766	9276		NM_004766	ENSG00000184432	COPB2	MCPH19|OPDD|beta'-COP	COPI coat complex subunit beta 2	protein-coding
141482	chr2	241088321	241088580	+	0	NA	TTS (NM_001330180)	TTS (NM_001330180)	13837	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
231981	chr9	133257501	133257900	+	0	NA	intron (NM_020469, intron 5 of 6)	intron (NM_020469, intron 5 of 6)	17501	NM_020469	28		NM_020469	ENSG00000175164	ABO	A3GALNT|A3GALT1|GTB|NAGAT	ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase	protein-coding
42012	chr11	67411021	67411280	+	0	NA	Intergenic	Intergenic	-4528	NM_020811	57571		NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
94784	chr17	31008251	31009600	+	0	NA	intron (NM_001350575, intron 1 of 5)	CpG	641	NM_001350579								
27877	chr10	41864121	41864950	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	503510	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
224166	chr9	5032251	5032350	+	0	NA	intron (NM_001322199, intron 4 of 24)	L1PA4|LINE|L1	-9393	NM_001322204	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
56759	chr12	120156651	120157350	+	0	NA	intron (NM_006836, intron 26 of 57)	intron (NM_006836, intron 26 of 57)	-1501	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
67624	chr14	72928601	72929080	+	0	NA	intron (NM_181340, intron 1 of 12)	intron (NM_181340, intron 1 of 12)	2376	NM_001352449	26094		NM_015604	ENSG00000119599	DCAF4	WDR21|WDR21A	DDB1 and CUL4 associated factor 4	protein-coding
150323	chr21	42045151	42045250	+	0	NA	Intergenic	Intergenic	-17677	NM_001199527	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
119544	chr19	40594201	40594950	+	0	NA	intron (NM_003573, intron 1 of 32)	intron (NM_003573, intron 1 of 32)	1409	NM_003573	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
167013	chr3	126085501	126086030	+	0	NA	intron (NM_001164475, intron 1 of 9)	MER4B-int|LTR|ERV1	-1641	NM_017836	54946		NM_017836	ENSG00000114544	SLC41A3	SLC41A1-L2	solute carrier family 41 member 3	protein-coding
15718	chr1	151023301	151023700	+	0	NA	intron (NM_001303243, intron 3 of 5)	AluSg|SINE|Alu	-13086	NM_138278	149428		NM_138278	ENSG00000163141	BNIPL	BNIP-S|BNIP-Salpha|BNIP-Sbeta|BNIPL-1|BNIPL-2|BNIPL1|BNIPL2|BNIPS|PP753	BCL2 interacting protein like	protein-coding
124660	chr2	3127221	3127550	+	0	NA	Intergenic	Intergenic	-1359	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
183992	chr5	90434171	90434350	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	24260	NR_105024	731157		NR_105024	ENSG00000255647	LOC731157	-	uncharacterized LOC731157	ncRNA
190709	chr6	251851	252280	+	0	NA	Intergenic	Intergenic	-39992	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
227119	chr9	86022771	86023200	+	0	NA	TTS (NM_001321881)	TTS (NM_001321881)	76573	NM_016548	51280		NM_016548	ENSG00000135052	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
98437	chr17	46841501	46842000	+	0	NA	Intergenic	Intergenic	-9833	NM_001320458	7484		NM_003396	ENSG00000158955	WNT9B	WNT14B|WNT15	Wnt family member 9B	protein-coding
160950	chr3	36923451	36923850	+	0	NA	intron (NM_001329998, intron 1 of 23)	MER83A-int|LTR|ERV1	21404	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
44730	chr11	111912721	111913100	+	0	NA	non-coding (NR_037651, exon 1 of 5)	non-coding (NR_037651, exon 1 of 5)	174	NR_037651	100528019		NR_037651	ENSG00000254445	HSPB2-C11orf52	C11orf52	HSPB2-C11orf52 readthrough (NMD candidate)	ncRNA
164398	chr3	58434921	58435180	+	0	NA	Intergenic	Intergenic	-1198	NM_001173468	5162		NM_000925	ENSG00000168291	PDHB	E1beta|PDHBD|PDHE1-B|PDHE1B|PHE1B	pyruvate dehydrogenase E1 subunit beta	protein-coding
234051	chrX	6690071	6690230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-155032	NM_016379	51481		NM_016379	ENSG00000169059	VCX3A	VCX-8r|VCX-A|VCX3|VCX8R|VCXA	variable charge X-linked 3A	protein-coding
238911	chrX	154717751	154718300	+	0	NA	intron (NR_104114, intron 1 of 8)	intron (NR_104114, intron 1 of 8)	33052	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
118762	chr19	38376551	38377130	+	0	NA	intron (NM_002812, intron 3 of 6)	L2b|LINE|L2	2269	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
152025	chr22	19443101	19443300	+	0	NA	3' UTR (NM_173793, exon 3 of 3)	3' UTR (NM_173793, exon 3 of 3)	4511	NM_001166242	128977		NM_173793	ENSG00000242259	C22orf39	Pants	chromosome 22 open reading frame 39	protein-coding
150247	chr21	41419871	41421130	+	0	NA	promoter-TSS (NM_001144925)	promoter-TSS (NM_001144925)	-58	NM_001144925	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
148412	chr20	63947151	63948000	+	0	NA	intron (NR_148442, intron 1 of 15)	intron (NR_148442, intron 1 of 15)	3612	NM_001193379	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
17457	chr1	156700701	156701930	+	0	NA	intron (NM_001878, intron 1 of 3)	intron (NM_001878, intron 1 of 3)	4268	NM_001878	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
40578	chr11	64361151	64361250	+	0	NA	exon (NM_001006944, exon 5 of 17)	exon (NM_001006944, exon 5 of 17)	2038	NM_003942	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
18396	chr1	161403921	161404180	+	0	NA	Intergenic	Intergenic	-36174	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
60181	chr13	40231051	40231150	+	0	NA	Intergenic	Intergenic	-10598	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
183868	chr5	87269371	87269680	+	0	NA	intron (NM_022650, intron 1 of 24)	intron (NM_022650, intron 1 of 24)	588	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
100112	chr17	58331201	58331900	+	0	NA	promoter-TSS (NR_029683)	promoter-TSS (NR_029683)	-232	NR_029683	406934		NR_029683	ENSG00000284353	MIR142	MIRN142|mir-142	microRNA 142	ncRNA
11879	chr1	93148621	93148880	+	0	NA	TTS (NM_016040)	TTS (NM_016040)	31663	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
160264	chr3	25658951	25659700	+	0	NA	intron (NM_001330700, intron 1 of 35)	intron (NM_001330700, intron 1 of 35)	5047	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
15871	chr1	151459201	151460280	+	0	NA	promoter-TSS (NM_145796)	promoter-TSS (NM_145796)	-246	NM_001194938	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
9905	chr1	54400121	54400980	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	5844	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
228789	chr9	111641201	111641950	+	0	NA	intron (NM_004125, intron 1 of 2)	SVA_F|Retroposon|SVA	10223	NR_037148	548645		NM_001015882	ENSG00000059769	DNAJC25	bA16L21.2.1	DnaJ heat shock protein family (Hsp40) member C25	protein-coding
81824	chr16	11566601	11567430	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	19358	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
33985	chr10	124667421	124667880	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-36378	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
48760	chr12	11297601	11298100	+	0	NA	Intergenic	L1PA2|LINE|L1	12585	NM_001261399	5545		NM_002723	ENSG00000230657	PRB4	Po	proline rich protein BstNI subfamily 4	protein-coding
163132	chr3	50134371	50135130	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-20308	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
94467	chr17	29263871	29264430	+	0	NA	3' UTR (NM_020772, exon 4 of 4)	3' UTR (NM_020772, exon 4 of 4)	17291	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
197836	chr6	88012971	88013350	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	-34681	NM_030960	81833		NM_030960	ENSG00000118434	SPACA1	SAMP32|SPGF85	sperm acrosome associated 1	protein-coding
5531	chr1	25810001	25810200	+	0	NA	intron (NM_206926, intron 6 of 11)	intron (NM_206926, intron 6 of 11)	-9806	NM_001099627	56181		NM_019557	ENSG00000117640	MTFR1L	FAM54B|HYST1888|MST116|MSTP116	mitochondrial fission regulator 1 like	protein-coding
25250	chr10	6058371	6058730	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	3817	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
67125	chr14	68564521	68565330	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	63862	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
127365	chr2	39229671	39230200	+	0	NA	promoter-TSS (NR_144520)	promoter-TSS (NR_144520)	-347	NM_001009565	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
214562	chr7	150568801	150569900	+	0	NA	intron (NM_018326, intron 1 of 2)	L2b|LINE|L2	1960	NM_018326	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
114251	chr19	11535971	11536750	+	0	NA	Intergenic	MIR|SINE|MIR	-2491	NM_001308342	1264		NM_001299	ENSG00000130176	CNN1	HEL-S-14|SMCC|Sm-Calp	calponin 1	protein-coding
60888	chr13	46140071	46140400	+	0	NA	intron (NM_002298, intron 13 of 15)	L1MEc|LINE|L1	-35159	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
124204	chr19	56507551	56508530	+	0	NA	intron (NM_020813, intron 1 of 4)	CpG	185	NM_001321768	57573		NM_020813	ENSG00000196263	ZNF471	ERP1|Z1971|Zfp78	zinc finger protein 471	protein-coding
151428	chr21	46128171	46128900	+	0	NA	intron (NM_001849, intron 27 of 27)	intron (NM_001849, intron 27 of 27)	-22840	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
158625	chr3	4907071	4907430	+	0	NA	promoter-TSS (NR_125914)	promoter-TSS (NR_125914)	-749	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
41963	chr11	67350071	67350230	+	0	NA	TTS (NR_046413)	TTS (NR_046413)	3396	NM_021173	57804		NM_021173	ENSG00000175482	POLD4	POLDS|p12	DNA polymerase delta 4, accessory subunit	protein-coding
113731	chr19	10474921	10475580	+	0	NA	Intergenic	Intergenic	22318	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
197511	chr6	75751601	75751800	+	0	NA	intron (NR_160538, intron 1 of 32)	intron (NR_160538, intron 1 of 32)	2461	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
221719	chr8	127307351	127308030	+	0	NA	intron (NR_117100, intron 5 of 5)	intron (NR_117100, intron 5 of 5)	63053	NR_117099	103021164		NR_117099		CASC21	CARLO2|CARLo-2|LINC01244	cancer susceptibility 21	ncRNA
192442	chr6	24898451	24899000	+	0	NA	intron (NM_001286446, intron 1 of 13)	L4_B_Mam|LINE|RTE-X	12009	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
15178	chr1	149122801	149123600	+	0	NA	Intergenic	AluYf1|SINE|Alu	-40889	NM_001037675	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
48795	chr12	11836271	11836600	+	0	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	186761	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
175480	chr4	73087651	73087750	+	0	NA	intron (NM_032217, intron 29 of 33)	intron (NM_032217, intron 29 of 33)	-17941	NM_001300729	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
181849	chr5	53080501	53080700	+	0	NA	non-coding (NR_073103, exon 24 of 29)	non-coding (NR_073103, exon 24 of 29)	29157	NM_004531	4338		NM_004531	ENSG00000164172	MOCS2	MCBPE|MOCO1|MOCODB|MPTS	molybdenum cofactor synthesis 2	protein-coding
149112	chr21	17594951	17595450	+	0	NA	intron (NM_001130914, intron 5 of 5)	intron (NM_001130914, intron 5 of 5)	-16486	NR_149073	110806272		NR_149073	ENSG00000280594	BTG3-AS1	ASBEL	BTG3 antisense RNA 1	ncRNA
221687	chr8	126534951	126535050	+	0	NA	Intergenic	Intergenic	23478	NM_174911	157638		NM_174911	ENSG00000168672	LRATD2	BCMP101|FAM84B|NSE2	LRAT domain containing 2	protein-coding
123933	chr19	55372101	55373080	+	0	NA	Intergenic	Intergenic	-2127	NM_000641	3589		NM_000641	ENSG00000095752	IL11	AGIF|IL-11	interleukin 11	protein-coding
224007	chr9	2241821	2242580	+	0	NA	Intergenic	Intergenic	83744	NM_001289400	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
191286	chr6	6586921	6587380	+	0	NA	intron (NR_026970, intron 1 of 7)	intron (NR_026970, intron 1 of 7)	-1570	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
88587	chr16	85577401	85577900	+	0	NA	Intergenic	Intergenic	-33759	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
166593	chr3	119112151	119112250	+	0	NA	intron (NM_001353320, intron 1 of 7)	L1PA3|LINE|L1	33820	NM_001353322	152404		NM_152538	ENSG00000144847	IGSF11	BT-IgSF|BTIGSF|CT119|CXADRL1|Igsf13|VSIG3	immunoglobulin superfamily member 11	protein-coding
197497	chr6	75614351	75614450	+	0	NA	intron (NM_015571, intron 1 of 23)	AluSx4|SINE|Alu	12520	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
169790	chr3	173395401	173396380	+	0	NA	promoter-TSS (NM_001365930)	promoter-TSS (NM_001365930)	-62	NM_001365923	22871		NM_014932	ENSG00000169760	NLGN1	NL1|NLG1	neuroligin 1	protein-coding
139547	chr2	224887021	224887530	+	0	NA	intron (NM_001363762, intron 4 of 55)	MIR1_Amn|SINE|MIR	59774	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
111900	chr19	4681251	4681350	+	0	NA	intron (NM_001384628, intron 20 of 21)	intron (NM_001384628, intron 20 of 21)	2018	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
209549	chr7	77266651	77266950	+	0	NA	intron (NM_020879, intron 9 of 18)	intron (NM_020879, intron 9 of 18)	-66981	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
56601	chr12	118058271	118058430	+	0	NA	intron (NM_001278557, intron 1 of 8)	AluJb|SINE|Alu	2829	NM_018639	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
99223	chr17	49579301	49579850	+	0	NA	3' UTR (NM_007225, exon 2 of 2)	3' UTR (NM_007225, exon 2 of 2)	3704	NM_007225	11248		NM_007225	ENSG00000182575	NXPH3	NPH3	neurexophilin 3	protein-coding
152453	chr22	20611551	20612050	+	0	NA	Intergenic	Intergenic	-77755	NR_024592	266697		NR_024592		POM121L4P	POM121L1|POM121L1P	POM121 transmembrane nucleoporin like 4, pseudogene	pseudo
68009	chr14	75068071	75068230	+	0	NA	intron (NM_001302617, intron 1 of 2)	AluSq|SINE|Alu	1340	NR_126394	97		NM_001107	ENSG00000119640	ACYP1	ACYPE	acylphosphatase 1	protein-coding
198216	chr6	98827621	98828430	+	0	NA	Intergenic	CpG	3675	NR_148381	105447646		NR_148381		PNKY	-	long intergenic non-protein coding RNA PNKY	ncRNA
228617	chr9	105531471	105531830	+	0	NA	intron (NM_001287191, intron 10 of 13)	intron (NM_001287191, intron 10 of 13)	11826	NR_104269	26134		NM_015639	ENSG00000229419	RALGAPA1P1	GARNL2|GARNL2P|RALGAPA1P|bA235C23.1	RALGAPA1 pseudogene 1	pseudo
199699	chr6	125066871	125067330	+	0	NA	intron (NM_001286398, intron 3 of 5)	intron (NM_001286398, intron 3 of 5)	83732	NM_152553	154214		NM_152553	ENSG00000146373	RNF217	C6orf172|IBRDC1|OSTL|dJ84N20.1	ring finger protein 217	protein-coding
71635	chr14	106744971	106745600	+	0	NA	Intergenic	HERVK22-int|LTR|ERVK	105714	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
169461	chr3	168089271	168089430	+	0	NA	intron (NM_001308155, intron 1 of 14)	intron (NM_001308155, intron 1 of 14)	6574	NM_001308155	27333		NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
235021	chrX	40010551	40011250	+	0	NA	Intergenic	Intergenic	87058	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
214475	chr7	150371871	150372230	+	0	NA	exon (NM_001099696, exon 2 of 2)	exon (NM_001099696, exon 2 of 2)	3228	NM_001362745	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
17935	chr1	160320451	160320750	+	0	NA	intron (NM_001098398, intron 8 of 32)	AluSz|SINE|Alu	3335	NR_002190	474338		NR_002190		SUMO1P3	-	SUMO1 pseudogene 3	pseudo
95127	chr17	35021321	35021880	+	0	NA	non-coding (NR_037713, exon 3 of 7)	non-coding (NR_037713, exon 3 of 7)	41088	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
226542	chr9	72349901	72350450	+	0	NA	Intergenic	Intergenic	14381	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
211156	chr7	102573701	102574500	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1479	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
72603	chr15	36578601	36580030	+	0	NA	promoter-TSS (NM_001130010)	promoter-TSS (NM_001130010)	-311	NM_001130010	84529		NM_032499	ENSG00000186073	CDIN1	C15orf41|HH114	CDAN1 interacting nuclease 1	protein-coding
45486	chr11	118608201	118609200	+	0	NA	intron (NM_001144759, intron 1 of 20)	CpG	1085	NM_001144759	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
215073	chr7	154134601	154135300	+	0	NA	intron (NM_130797, intron 1 of 25)	intron (NM_130797, intron 1 of 25)	-74380	NR_136254	101929998		NR_136254		LOC101929998	-	uncharacterized LOC101929998	ncRNA
111650	chr19	4199451	4199750	+	0	NA	intron (NM_133475, intron 2 of 21)	intron (NM_133475, intron 2 of 21)	16246	NM_133475	170961		NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
72069	chr15	28888871	28889630	+	0	NA	intron (NM_001353788, intron 1 of 14).2	intron (NM_001353788, intron 1 of 14).2	3276	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
113959	chr19	10769951	10770650	+	0	NA	intron (NM_001005362, intron 2 of 19)	intron (NM_001005362, intron 2 of 19)	-9954	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
24088	chr1	235339921	235340950	+	0	NA	intron (NM_001371477, intron 2 of 3)	AluJb|SINE|Alu	11427	NM_001371478	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
145444	chr20	43507271	43508830	+	0	NA	intron (NM_001377311, intron 1 of 20)	CpG	353	NR_165189	26013		NM_015478	ENSG00000185513	L3MBTL1	H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3	L3MBTL histone methyl-lysine binding protein 1	protein-coding
139825	chr2	230414521	230414800	+	0	NA	Intergenic	Intergenic	-1496	NM_001206703	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
68663	chr14	90258401	90258600	+	0	NA	intron (NM_001330212, intron 2 of 11)	intron (NM_001330212, intron 2 of 11)	561	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
12767	chr1	109637451	109637750	+	0	NA	Intergenic	Intergenic	13612	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
35890	chr11	2403371	2403800	+	0	NA	TTS (NM_014555)	TTS (NM_014555)	2835	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
96208	chr17	39765701	39766130	+	0	NA	exon (NM_001257414, exon 5 of 5)	exon (NM_001257414, exon 5 of 5)	12310	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
39956	chr11	62564521	62565250	+	0	NA	intron (NM_001404, intron 7 of 9)	AluSc8|SINE|Alu	2186	NR_106805	102465447		NR_106805	ENSG00000276102	MIR6747	hsa-mir-6747	microRNA 6747	ncRNA
106620	chr18	22349001	22349830	+	0	NA	Intergenic	Intergenic	68500	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
113609	chr19	10299521	10300330	+	0	NA	Intergenic	Intergenic	9632	NM_001103167	100125288		NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	zinc finger GATA like protein 1	protein-coding
220803	chr8	102682571	102682800	+	0	NA	intron (NR_160672, intron 3 of 4)	intron (NR_160672, intron 3 of 4)	26437	NR_160673	101927245		NR_160672	ENSG00000283959	LOC101927245	-	uncharacterized LOC101927245	ncRNA
215379	chr7	157418771	157419130	+	0	NA	Intergenic	CpG	-47281	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
37549	chr11	18702371	18702530	+	0	NA	3' UTR (NM_153347, exon 3 of 3)	3' UTR (NM_153347, exon 3 of 3)	3671	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
74380	chr15	58867051	58867350	+	0	NA	Intergenic	Intergenic	66479	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
105241	chr17	82388251	82388780	+	0	NA	TTS (NM_024648)	TTS (NM_024648)	16750	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
206126	chr7	27507671	27507930	+	0	NA	Intergenic	L1PA3|LINE|L1	-108174	NR_122123	790953		NR_122122		TSL	-	testis-expressed, seven-twelve, leukemia	ncRNA
161036	chr3	38000551	38001050	+	0	NA	intron (NM_015873, intron 11 of 19)	intron (NM_015873, intron 11 of 19)	6662	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
126088	chr2	25825001	25825750	+	0	NA	intron (NM_018263, intron 2 of 11)	L1MB2|LINE|L1	5526	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
70132	chr14	100265371	100265530	+	0	NA	intron (NM_003403, intron 2 of 4)	intron (NM_003403, intron 2 of 4)	-11907	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
140524	chr2	233232151	233232450	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-19271	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
50369	chr12	47215111	47216000	+	0	NA	intron (NR_026544, intron 2 of 2)	intron (NR_026544, intron 2 of 2)	888	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
35865	chr11	2381601	2381800	+	0	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-3708	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
36978	chr11	11844301	11844730	+	0	NA	intron (NM_001372101, intron 1 of 26)	MIR3|SINE|MIR	2543	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
183437	chr5	78886721	78887050	+	0	NA	intron (NM_000046, intron 4 of 7)	intron (NM_000046, intron 4 of 7)	98425	NM_000046	411		NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
47707	chr12	6446421	6447150	+	0	NA	intron (NM_001242, intron 2 of 5)	(AC)n|Simple_repeat|Simple_repeat	1830	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
73804	chr15	48795971	48796280	+	0	NA	exon (NM_014985, exon 6 of 26)	exon (NM_014985, exon 6 of 26)	14944	NM_001194998	22995		NM_014985	ENSG00000103995	CEP152	MCPH4|MCPH9|SCKL5	centrosomal protein 152	protein-coding
194715	chr6	33769571	33769930	+	0	NA	Intergenic	Intergenic	17192	NM_001143944	221496		NM_181336	ENSG00000161904	LEMD2	CTRCT42|LEM2|MARUPS|NET25|dJ482C21.1	LEM domain nuclear envelope protein 2	protein-coding
223332	chr8	143826051	143826150	+	0	NA	intron (NM_078480, intron 1 of 11)	intron (NM_078480, intron 1 of 11)	2941	NM_001362896	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
238532	chrX	153723251	153725290	+	0	NA	promoter-TSS (NM_001139441)	promoter-TSS (NM_001139441)	113	NM_005745	10134		NM_005745	ENSG00000185825	BCAP31	6C6-AG|BAP31|CDM|DDCH|DELXQ28|DXS1357E|MICRODELXq28	B cell receptor associated protein 31	protein-coding
57976	chr12	123983751	123984170	+	0	NA	intron (NM_001347902, intron 2 of 4)	intron (NM_001347902, intron 2 of 4)	10745	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
95099	chr17	34580821	34582030	+	0	NA	intron (NM_001304438, intron 1 of 8)	CpG	1843	NM_001304438	124842		NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding
20988	chr1	202646121	202646380	+	0	NA	intron (NM_177402, intron 1 of 8)	L2a|LINE|L2	-2797	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
91091	chr17	3569851	3570230	+	0	NA	intron (NM_080704, intron 16 of 16)	L1MB4|LINE|L1	-12228	NM_145068	162514		NM_145068	ENSG00000167723	TRPV3	FNEPPK2|OLMS|OLMS1|VRL3	transient receptor potential cation channel subfamily V member 3	protein-coding
183896	chr5	87375021	87375500	+	0	NA	intron (NM_022650, intron 15 of 24)	intron (NM_022650, intron 15 of 24)	37644	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
79611	chr16	1090471	1090630	+	0	NA	3' UTR (NM_207419, exon 5 of 5)	3' UTR (NM_207419, exon 5 of 5)	5694	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
28270	chr10	45829571	45829730	+	0	NA	intron (NM_133446, intron 5 of 6)	AluJr|SINE|Alu	-12326	NM_001351234	643479		NM_001351234	ENSG00000290779	FAM25EP	FAM25D|FAM25E	family with sequence similarity 25 member E	pseudo
209988	chr7	92838371	92838730	+	0	NA	intron (NR_110088, intron 1 of 1)	intron (NR_110088, intron 1 of 1)	-1977	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
18158	chr1	160776601	160776830	+	0	NA	Intergenic	Intergenic	-19459	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
178187	chr4	142396351	142397450	+	0	NA	intron (NR_169599, intron 3 of 22)	L1ME2|LINE|L1	6233	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
43729	chr11	86055251	86055350	+	0	NA	intron (NM_001206947, intron 1 of 18)	AluSq|SINE|Alu	13784	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
203260	chr6	169589371	169590000	+	0	NA	intron (NR_146875, intron 18 of 20)	intron (NR_146875, intron 18 of 20)	112344	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
213052	chr7	131058721	131060450	+	0	NA	intron (NR_109852, intron 2 of 5)	LTR12C|LTR|ERV1	47445	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
137915	chr2	200905801	200906580	+	0	NA	Intergenic	MER21A|LTR|ERVL	14272	NM_001142356	60491		NM_021824	ENSG00000196290	NIF3L1	ALS2CR1|CALS-7|MDS015	NGG1 interacting factor 3 like 1	protein-coding
132350	chr2	105744221	105745800	+	0	NA	promoter-TSS (NM_003581)	promoter-TSS (NM_003581)	-53	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
52980	chr12	57486071	57486930	+	0	NA	intron (NM_001319850, intron 1 of 20)	AluSz|SINE|Alu	-1568	NM_004990	4141		NM_004990	ENSG00000166986	MARS1	CMT2U|ILFS2|ILLD|MARS|METRS|MRS|MTRNS|SPG70|TTD9	methionyl-tRNA synthetase 1	protein-coding
20239	chr1	193411871	193412380	+	0	NA	Intergenic	Intergenic	107380	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
156812	chr22	41928271	41928500	+	0	NA	Intergenic	Intergenic	-1579	NM_052945	115650		NM_052945	ENSG00000159958	TNFRSF13C	BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin	TNF receptor superfamily member 13C	protein-coding
116892	chr19	18700341	18701930	+	0	NA	intron (NM_015321, intron 1 of 13)	intron (NM_015321, intron 1 of 13)	17455	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
19462	chr1	174941171	174941330	+	0	NA	intron (NR_121196, intron 3 of 5)	LTR82B|LTR|ERVL	13011	NR_121196	101928696		NR_121196	ENSG00000229531	RABGAP1L-AS1	-	RABGAP1L antisense RNA 1	ncRNA
125416	chr2	11749821	11751950	+	0	NA	intron (NM_001349205, intron 1 of 21)	intron (NM_001349205, intron 1 of 21)	2352	NM_001349205	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
7268	chr1	32367671	32368030	+	0	NA	3' UTR (NM_001300958, exon 10 of 10)	3' UTR (NM_001300958, exon 10 of 10)	5311	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
36741	chr11	9268701	9269100	+	0	NA	Intergenic	AluYf1|SINE|Alu	-3550	NM_015213	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
171117	chr3	195528601	195529100	+	0	NA	intron (NM_001316325, intron 2 of 6)	AluJr|SINE|Alu	14475	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
4842	chr1	23673151	23673250	+	0	NA	Intergenic	L1M5|LINE|L1	-18579	NM_001199802	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
18851	chr1	167716201	167717250	+	0	NA	Intergenic	AluY|SINE|Alu	-5257	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
69296	chr14	93103371	93104550	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	11965	NM_001142594	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
109524	chr19	851671	852080	+	0	NA	promoter-TSS (NM_001972)	promoter-TSS (NM_001972)	-428	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
141726	chr2	241859601	241861450	+	0	NA	Intergenic	Intergenic	-1631	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
176199	chr4	83537571	83537730	+	0	NA	intron (NM_001256421, intron 2 of 12)	AluJr|SINE|Alu	1542	NM_032717	84803		NM_032717	ENSG00000138678	GPAT3	AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1	glycerol-3-phosphate acyltransferase 3	protein-coding
31714	chr10	97675001	97675930	+	0	NA	3' UTR (NM_018425, exon 9 of 9)	3' UTR (NM_018425, exon 9 of 9)	11776	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
112255	chr19	5785751	5785850	+	0	NA	intron (NM_020175, intron 10 of 12)	CpG	-1054	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
169338	chr3	160027571	160027930	+	0	NA	intron (NR_104132, intron 2 of 2)	MIR|SINE|MIR	7101	NR_104132	730109		NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
120233	chr19	42323501	42324700	+	0	NA	intron (NM_173633, intron 14 of 14)	CpG	-1535	NM_001271938	1954		NM_001410	ENSG00000105429	MEGF8	C19orf49|CRPT2|EGFL4|SBP1	multiple EGF like domains 8	protein-coding
45295	chr11	118115071	118115230	+	0	NA	exon (NM_001173551, exon 11 of 13)	exon (NM_001173551, exon 11 of 13)	-28187	NM_001354434	100526771		NM_001354434	ENSG00000255274	SMIM35	TMPRSS4-AS1	small integral membrane protein 35	protein-coding
238655	chrX	154013351	154014200	+	0	NA	intron (NM_001025243, intron 10 of 12)	intron (NM_001025243, intron 10 of 12)	6127	NM_001025242	3654		NM_001569	ENSG00000184216	IRAK1	IRAK|pelle	interleukin 1 receptor associated kinase 1	protein-coding
64513	chr14	24371451	24371850	+	0	NA	intron (NM_004554, intron 2 of 9)	intron (NM_004554, intron 2 of 9)	2568	NM_001198966	4776		NM_004554	ENSG00000100968	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T cells 4	protein-coding
31675	chr10	97433201	97433400	+	0	NA	3' UTR (NM_002629, exon 4 of 4)	3' UTR (NM_002629, exon 4 of 4)	5623	NM_001317079	5223		NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
231458	chr9	131280971	131281130	+	0	NA	Intergenic	Intergenic	-4540	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
28750	chr10	61991671	61993630	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	-56707	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
190598	chr5	181159071	181159880	+	0	NA	Intergenic	Intergenic	4532	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
174507	chr4	39973301	39974280	+	0	NA	intron (NM_001100399, intron 2 of 32)	intron (NM_001100399, intron 2 of 32)	4121	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
42343	chr11	68506621	68507250	+	0	NA	intron (NR_147971, intron 2 of 24)	intron (NR_147971, intron 2 of 24)	46183	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
209576	chr7	77428871	77429450	+	0	NA	Intergenic	Intergenic	-12811	NM_001350896	54103		NM_017439	ENSG00000186088	GSAP	PION	gamma-secretase activating protein	protein-coding
176042	chr4	82372801	82375280	+	0	NA	promoter-TSS (NM_031369)	promoter-TSS (NM_031369)	-44	NM_031369	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
58144	chr12	124914501	124915650	+	0	NA	promoter-TSS (NR_049820)	promoter-TSS (NR_049820)	-425	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
1061	chr1	1903071	1903430	+	0	NA	Intergenic	L1MB5|LINE|L1	-12010	NM_001330313	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
45260	chr11	117999601	118000130	+	0	NA	non-coding (NR_026691, exon 8 of 8)	non-coding (NR_026691, exon 8 of 8)	13471	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
200648	chr6	137032171	137032600	+	0	NA	intron (NM_001278724, intron 1 of 5)	MIR3|SINE|MIR	11927	NM_001278722	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
29702	chr10	72065371	72066880	+	0	NA	intron (NM_014767, intron 9 of 11)	intron (NM_014767, intron 9 of 11)	22426	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
172203	chr4	1286121	1286580	+	0	NA	Intergenic	LTR28C|LTR|ERV1	-3541	NM_005882	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
238905	chrX	154647301	154647580	+	0	NA	Intergenic	Intergenic	6139	NM_172377	30848		NM_020994	ENSG00000126890	CTAG2	CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B	cancer/testis antigen 2	protein-coding
181876	chr5	54469771	54469930	+	0	NA	Intergenic	L1MEi|LINE|L1	14151	NM_006308	8988		NM_006308	ENSG00000169271	HSPB3	DHMN2C|HMN2C|HMND4|HSPL27	heat shock protein family B (small) member 3	protein-coding
66798	chr14	64717851	64718450	+	0	NA	intron (NM_001308147, intron 1 of 16)	L2c|LINE|L2	13726	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
63456	chr13	114126901	114127430	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	5458	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
21953	chr1	207981921	207982330	+	0	NA	Intergenic	LTR81C|LTR|Gypsy	23134	NR_167983	105372883		NR_167982		LINC02767	-	long intergenic non-protein coding RNA 2767	ncRNA
89528	chr16	89184121	89184630	+	0	NA	intron (NM_004933, intron 4 of 13)	intron (NM_004933, intron 4 of 13)	12627	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
232423	chr9	136092071	136092430	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	3039	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
101755	chr17	72587771	72588330	+	0	NA	intron (NR_036488, intron 1 of 3)	intron (NR_036488, intron 1 of 3)	4754	NR_036488	100499467		NR_036488	ENSG00000227036	LINC00673	ERRLR01|HI-LNC75|HILNC75|LUCAIR1|RASON|SLNCR|SLNCR1	long intergenic non-protein coding RNA 673	ncRNA
15003	chr1	148150071	148150230	+	0	NA	intron (NM_001385469, intron 1 of 23)	intron (NM_001385469, intron 1 of 23)	2131	NM_001101663	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
8658	chr1	41811351	41811740	+	0	NA	intron (NM_024503, intron 1 of 8)	MIR|SINE|MIR	107377	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
78504	chr15	92930771	92931130	+	0	NA	intron (NM_001042572, intron 5 of 12)	intron (NM_001042572, intron 5 of 12)	26551	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
179435	chr4	184364701	184364900	+	0	NA	TTS (NR_125933)	TTS (NR_125933)	-10823	NR_040108	728175		NR_040108	ENSG00000180712	LINC02363	-	long intergenic non-protein coding RNA 2363	ncRNA
155051	chr22	37498271	37499430	+	0	NA	intron (NM_014550, intron 11 of 19)	intron (NM_014550, intron 11 of 19)	-12463	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
18026	chr1	160574771	160575650	+	0	NA	intron (NM_003874, intron 1 of 6)	intron (NM_003874, intron 1 of 6)	4286	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
50167	chr12	45979001	45979200	+	0	NA	intron (NM_004719, intron 1 of 14)	MLT1A1|LTR|ERVL-MaLR	11474	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
204356	chr7	2904701	2904900	+	0	NA	Intergenic	Intergenic	-60492	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
22407	chr1	220015871	220016030	+	0	NA	intron (NM_004446, intron 12 of 31)	HAL1|LINE|L1	30555	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
187453	chr5	142118221	142118600	+	0	NA	intron (NM_030571, intron 1 of 7)	L1MC3|LINE|L1	9631	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
143318	chr20	25399121	25399400	+	0	NA	Intergenic	HERVK3-int|LTR|ERVK	-8413	NM_021067	9837		NM_021067	ENSG00000101003	GINS1	IMD55|PSF1	GINS complex subunit 1	protein-coding
79040	chr16	76021	76480	+	0	NA	promoter-TSS (NM_001015054)	promoter-TSS (NM_001015054)	-769	NM_001015054	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
124810	chr2	7553071	7553430	+	0	NA	Intergenic	L1MEg1|LINE|L1	131989	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
212471	chr7	128507921	128508180	+	0	NA	Intergenic	AluJr|SINE|Alu	31302	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
103183	chr17	77449151	77449650	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-1349	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
163964	chr3	52986921	52987180	+	0	NA	intron (NM_016329, intron 1 of 20)	Tigger3b|DNA|TcMar-Tigger	59023	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
105823	chr18	2969671	2970100	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	-23262	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
85967	chr16	57297501	57298350	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-13253	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
162352	chr3	47824521	47826150	+	0	NA	intron (NM_014966, intron 5 of 22)	CpG	22197	NR_075079	22907		NM_014966	ENSG00000132153	DHX30	DDX30|NEDMIAL|RETCOR	DExH-box helicase 30	protein-coding
99706	chr17	50861921	50862330	+	0	NA	TTS (NM_001243877)	TTS (NM_001243877)	4229	NM_001243885	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
130856	chr2	87396101	87396800	+	0	NA	Intergenic	(CCAAGCCAG)n|Simple_repeat|Simple_repeat	-58977	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
199970	chr6	127973821	127974330	+	0	NA	intron (NM_001291981, intron 30 of 32).2	L2c|LINE|L2	-53790	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
106174	chr18	10074251	10074350	+	0	NA	Intergenic	Intergenic	160284	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
65140	chr14	45086501	45086750	+	0	NA	intron (NM_017922, intron 1 of 13)	intron (NM_017922, intron 1 of 13)	2509	NM_017922	55015		NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
145050	chr20	38426921	38427180	+	0	NA	TTS (NR_002911)	TTS (NR_002911)	393	NR_002911	26777		NR_002911	ENSG00000225091	SNORA71A	RNU71A|U71a	small nucleolar RNA, H/ACA box 71A	snoRNA
13551	chr1	115147821	115148280	+	0	NA	Intergenic	L1PA2|LINE|L1	-58547	NM_005725	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
2417	chr1	9590821	9591280	+	0	NA	intron (NM_001130924, intron 1 of 10)	intron (NM_001130924, intron 1 of 10)	2139	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
233114	chr9	137133871	137134030	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5204	NM_007327	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
29348	chr10	69465051	69465600	+	0	NA	intron (NM_001351263, intron 1 of 5)	intron (NM_001351263, intron 1 of 5)	13858	NR_147091	23555		NM_012339	ENSG00000099282	TSPAN15	2700063A19Rik|NET-7|NET7|TM4SF15	tetraspanin 15	protein-coding
127607	chr2	42974951	42975650	+	0	NA	Intergenic	Intergenic	64243	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
69485	chr14	95478271	95478430	+	0	NA	intron (NM_001384284, intron 1 of 8)	intron (NM_001384284, intron 1 of 8)	22190	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
95329	chr17	35743021	35743380	+	0	NA	3' UTR (NM_033315, exon 4 of 4)	3' UTR (NM_033315, exon 4 of 4)	10039	NM_139285	246176		NM_139285	ENSG00000270765	GAS2L2	CILD41|GAR17	growth arrest specific 2 like 2	protein-coding
224834	chr9	27276471	27276630	+	0	NA	intron (NR_026679, intron 6 of 16)	intron (NR_026679, intron 6 of 16)	6243	NR_026679	158035		NR_026679	ENSG00000291187	LINC00032	C9orf14|NCRNA00032	long intergenic non-protein coding RNA 32	ncRNA
91321	chr17	4368401	4368600	+	0	NA	Intergenic	AluJr|SINE|Alu	-1826	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
82141	chr16	14766671	14766830	+	0	NA	Intergenic	AluJr|SINE|Alu	15937	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
84572	chr16	30625801	30626000	+	0	NA	Intergenic	AluSx|SINE|Alu	-15125	NR_073481	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
31222	chr10	91694351	91694450	+	0	NA	Intergenic	Intergenic	-61329	NM_005398	5507		NM_005398	ENSG00000119938	PPP1R3C	PPP1R5|PTG	protein phosphatase 1 regulatory subunit 3C	protein-coding
161584	chr3	43012401	43012990	+	0	NA	intron (NM_001129908, intron 1 of 4)	intron (NM_001129908, intron 1 of 4)	33384	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
191764	chr6	14098701	14098900	+	0	NA	Intergenic	L1MC4a|LINE|L1	-18456	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
106402	chr18	13450701	13451100	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-9047	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
150874	chr21	44121321	44121580	+	0	NA	intron (NM_005049, intron 13 of 20).2	intron (NM_005049, intron 13 of 20).2	-12233	NR_135220	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
71412	chr14	105558421	105559000	+	0	NA	Intergenic	Intergenic	26855	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
200960	chr6	139219251	139219630	+	0	NA	Intergenic	Intergenic	72558	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
116725	chr19	18455851	18456550	+	0	NA	intron (NM_006532, intron 6 of 11)	intron (NM_006532, intron 6 of 11)	-18067	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
217980	chr8	38369571	38370150	+	0	NA	intron (NM_017778, intron 1 of 9)	AluSz|SINE|Alu	12411	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
127957	chr2	46567151	46567650	+	0	NA	TTS (NR_104182)	TTS (NR_104182)	12838	NR_104182	100506142		NR_104182	ENSG00000250116	RHOQ-AS1	-	RHOQ antisense RNA 1	ncRNA
168514	chr3	143847901	143849150	+	0	NA	promoter-TSS (NM_173653)	promoter-TSS (NM_173653)	-57	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
62564	chr13	99959651	99960280	+	0	NA	Intergenic	CpG	-2800	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
133130	chr2	112664471	112664630	+	0	NA	TTS (NM_005415)	TTS (NM_005415)	18611	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
77961	chr15	89367521	89368200	+	0	NA	promoter-TSS (NR_133003)	promoter-TSS (NR_133003)	-157	NR_029692	407051		NR_029692	ENSG00000284329	MIR9-3	MIRN9-3|hsa-mir-9-3|miRNA9-3|mir-9-3	microRNA 9-3	ncRNA
82848	chr16	21513901	21514680	+	0	NA	Intergenic	Intergenic	6154	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
233636	chrX	668021	668150	+	0	NA	Intergenic	(CCTCC)n|Simple_repeat|Simple_repeat	43741	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
129409	chr2	68925171	68925640	+	0	NA	Intergenic	Intergenic	27488	NM_182536	200504		NM_182536	ENSG00000183607	GKN2	BRICD1B|GDDR|PRO813|TFIZ1|VLTI465	gastrokine 2	protein-coding
208151	chr7	64565971	64566530	+	0	NA	Intergenic	Intergenic	-3123	NM_001130022	340252		NM_178558	ENSG00000173041	ZNF680	-	zinc finger protein 680	protein-coding
222152	chr8	132695471	132695800	+	0	NA	Intergenic	L2a|LINE|L2	-20090	NM_001321966	23639		NM_012472	ENSG00000129295	DNAAF11	CILD19|LRRC6|LRTP|TSLRP|tilB	dynein axonemal assembly factor 11	protein-coding
26182	chr10	14536701	14537680	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	1352	NM_001320740	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
15669	chr1	150925611	150928050	+	0	NA	intron (NM_012432, intron 1 of 21)	intron (NM_012432, intron 1 of 21)	467	NM_012432	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
11661	chr1	91811701	91811900	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	74351	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
86503	chr16	67054001	67054750	+	0	NA	intron (NM_001368708, intron 3 of 4)	HAL1|LINE|L1	25226	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
1508	chr1	2789771	2790130	+	0	NA	exon (NM_001242672, exon 2 of 8)	exon (NM_001242672, exon 2 of 8)	10918	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
110259	chr19	1796951	1797050	+	0	NA	exon (NM_138813, exon 15 of 29)	exon (NM_138813, exon 15 of 29)	15276	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
83887	chr16	28953001	28953200	+	0	NA	intron (NM_032815, intron 2 of 7)	AluSx1|SINE|Alu	2103	NM_032815	84901		NM_032815	ENSG00000176953	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T cells 2 interacting protein	protein-coding
63305	chr13	113990351	113990980	+	0	NA	intron (NM_001320822, intron 22 of 23).2	intron (NM_001320822, intron 22 of 23).2	-16589	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
226797	chr9	77011971	77012350	+	0	NA	Intergenic	Intergenic	-7495	NM_001013735	442425		NM_001013735	ENSG00000204612	FOXB2	FKH4|bA159H20.4	forkhead box B2	protein-coding
76938	chr15	78073871	78074230	+	0	NA	intron (NM_144572, intron 1 of 12)	AluSz|SINE|Alu	3602	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
160786	chr3	32952441	32953680	+	0	NA	intron (NM_005508, intron 1 of 1)	intron (NM_005508, intron 1 of 1)	1416	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
30172	chr10	74207821	74208150	+	0	NA	intron (NM_001202449, intron 2 of 9)	MER52A|LTR|ERV1	31222	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
191663	chr6	13432501	13433180	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	-24703	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
215346	chr7	157374171	157374330	+	0	NA	intron (NM_001363676, intron 5 of 6)	intron (NM_001363676, intron 5 of 6)	37246	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
176924	chr4	102818101	102818730	+	0	NA	intron (NM_181893, intron 1 of 6)	intron (NM_181893, intron 1 of 6)	7445	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
190566	chr5	180811821	180812230	+	0	NA	intron (NM_001364380, intron 1 of 2)	L2a|LINE|L2	-1569	NM_001364384	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
61853	chr13	76988071	76988430	+	0	NA	Intergenic	Intergenic	-3831	NM_001366624	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
229138	chr9	114479901	114480500	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	23015	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
174886	chr4	48782801	48783000	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2621	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
76289	chr15	74136051	74137130	+	0	NA	3' UTR (NM_020851, exon 3 of 3)	3' UTR (NM_020851, exon 3 of 3)	6004	NM_020851	57611		NM_020851	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine rich repeat 2	protein-coding
192711	chr6	26327321	26327680	+	0	NA	Intergenic	Intergenic	-37659	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
139792	chr2	230257521	230258030	+	0	NA	intron (NM_001278453, intron 9 of 23)	AluSz|SINE|Alu	32039	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
96186	chr17	39737351	39737730	+	0	NA	promoter-TSS (NM_005310)	promoter-TSS (NM_005310)	-398	NM_001330207	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
80499	chr16	2719021	2719330	+	0	NA	intron (NM_001318395, intron 1 of 4)	intron (NM_001318395, intron 1 of 4)	1049	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
46427	chr11	127733651	127733830	+	0	NA	Intergenic	Intergenic	462670	NR_120580	101929497		NR_120580	ENSG00000273409	LINC02712	-	long intergenic non-protein coding RNA 2712	ncRNA
25770	chr10	11142551	11143530	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-21841	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
6474	chr1	28330601	28331550	+	0	NA	intron (NM_017638, intron 2 of 2).2	AluY|SINE|Alu	2035	NM_017638	54797		NM_017638	ENSG00000130772	MED18	SRB5|p28b	mediator complex subunit 18	protein-coding
52482	chr12	55976051	55976150	+	0	NA	intron (NM_002868, intron 1 of 5)	intron (NM_002868, intron 1 of 5)	2022	NM_002868	5869		NM_002868	ENSG00000111540	RAB5B	-	RAB5B, member RAS oncogene family	protein-coding
7384	chr1	32892851	32894180	+	0	NA	intron (NM_002143, intron 2 of 3)	CpG	7024	NM_002143	3208		NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
97015	chr17	42299601	42300000	+	0	NA	exon (NM_001288720, exon 6 of 18)	exon (NM_001288720, exon 6 of 18)	11744	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
181439	chr5	40836321	40836800	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-1338	NM_000997	6167		NM_000997	ENSG00000145592	RPL37	L37|eL37	ribosomal protein L37	protein-coding
14507	chr1	144569971	144570430	+	0	NA	Intergenic	Intergenic	-18257	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
193005	chr6	28212871	28213230	+	0	NA	Intergenic	tRNA-Ser-AGY|tRNA|tRNA	5879	NR_002936	222699		NR_002936		TOB2P1	TOB2P|TOB4p|p373c6.3	transducer of ERBB2, 2 pseudogene 1	pseudo
221980	chr8	129991721	129992300	+	0	NA	intron (NM_001353269, intron 1 of 10)	L2|LINE|L2	16443	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
111607	chr19	4104251	4106180	+	0	NA	intron (NM_030662, intron 3 of 10)	intron (NM_030662, intron 3 of 10)	18907	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
84776	chr16	30996671	30998030	+	0	NA	intron (NM_052874, intron 5 of 9)	CpG	12143	NM_001142778	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
230016	chr9	127122501	127123150	+	0	NA	promoter-TSS (NM_012098)	promoter-TSS (NM_012098)	-190	NM_012098	23452		NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
85749	chr16	56731501	56731700	+	0	NA	intron (NM_014669, intron 1 of 21)	AluSz|SINE|Alu	1471	NM_014669	9688		NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
81741	chr16	11358171	11358950	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	13101	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
19995	chr1	185178351	185178850	+	0	NA	intron (NM_017673, intron 5 of 18)	intron (NM_017673, intron 5 of 18)	21433	NM_017673	54823		NM_017673	ENSG00000116668	SWT1	C1orf26|HsSwt1	SWT1 RNA endoribonuclease homolog	protein-coding
114087	chr19	11108121	11108880	+	0	NA	intron (NM_001195800, intron 4 of 15)	AluSz|SINE|Alu	-4974	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
199858	chr6	127786821	127787300	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L1M4|LINE|L1	68128	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
146398	chr20	49300021	49300280	+	0	NA	Intergenic	AluJb|SINE|Alu	19467	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
224050	chr9	3516821	3517150	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	9016	NM_002919	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
104504	chr17	81222321	81223830	+	0	NA	promoter-TSS (NM_001319229)	promoter-TSS (NM_001319229)	-110	NM_001319229	22994		NM_014984	ENSG00000141577	CEP131	AZ1|AZI1|ZA1	centrosomal protein 131	protein-coding
228910	chr9	113062251	113062580	+	0	NA	Intergenic	CpG	-5691	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
34163	chr10	128074151	128074450	+	0	NA	intron (NM_001323354, intron 16 of 19)	L1MB7|LINE|L1	-11875	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
137103	chr2	190964151	190964930	+	0	NA	3' UTR (NM_014905, exon 18 of 18)	3' UTR (NM_014905, exon 18 of 18)	49631	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
128078	chr2	47870701	47871280	+	0	NA	intron (NM_001190274, intron 1 of 22)	L1M5|LINE|L1	17729	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
95570	chr17	36938051	36938850	+	0	NA	intron (NM_005568, intron 1 of 4)	CpG-11024	975	NM_005568	3975		NM_005568	ENSG00000273706	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
65834	chr14	54896671	54897530	+	0	NA	intron (NM_001024024, intron 1 of 6)	AluSc|SINE|Alu	5724	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
111957	chr19	4815601	4816850	+	0	NA	3' UTR (NM_182919, exon 2 of 2)	3' UTR (NM_182919, exon 2 of 2)	15487	NM_001385680	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
215891	chr8	8049901	8050200	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	39039	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
183525	chr5	79736451	79737180	+	0	NA	exon (NM_153610, exon 2 of 13)	exon (NM_153610, exon 2 of 13)	46979	NM_153610	202333		NM_153610	ENSG00000164309	CMYA5	C5orf10|SPRYD2|TRIM76	cardiomyopathy associated 5	protein-coding
19960	chr1	184890051	184891180	+	0	NA	intron (NM_052966, intron 3 of 13)	intron (NM_052966, intron 3 of 13)	83893	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
134661	chr2	144461221	144461860	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-58074	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
236194	chrX	65671371	65672230	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	4146	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
55228	chr12	101825871	101826330	+	0	NA	intron (NM_024312, intron 1 of 20)	intron (NM_024312, intron 1 of 20)	4859	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
214330	chr7	149287571	149287730	+	0	NA	non-coding (NR_036573, exon 2 of 11)	non-coding (NR_036573, exon 2 of 11)	2369	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
118709	chr19	38222271	38222430	+	0	NA	intron (NM_001363579, intron 3 of 11)	intron (NM_001363579, intron 3 of 11)	1872	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
194154	chr6	32043201	32043600	+	0	NA	intron (NM_019105, intron 36 of 43).4	intron (NM_019105, intron 36 of 43).4	2728	NM_032470	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
173119	chr4	6563551	6564130	+	0	NA	promoter-TSS (NM_001206994)	promoter-TSS (NM_001206994)	-41	NM_001206994	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
38406	chr11	44950311	44951650	+	0	NA	promoter-TSS (NM_001318387)	promoter-TSS (NM_001318387)	-97	NM_001318390	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
134805	chr2	148048751	148049050	+	0	NA	intron (NM_018328, intron 2 of 14)	intron (NM_018328, intron 2 of 14)	-27296	NM_181742	5000		NM_002552	ENSG00000115947	ORC4	ORC4L|ORC4P	origin recognition complex subunit 4	protein-coding
72575	chr15	34585051	34585150	+	0	NA	Intergenic	Intergenic	-1449	NM_001023567	440270		NM_001023567	ENSG00000215252	GOLGA8B	GOLGA5	golgin A8 family member B	protein-coding
136944	chr2	190318071	190318450	+	0	NA	intron (NM_198047, intron 1 of 12)	intron (NM_198047, intron 1 of 12)	1566	NM_198047	26275		NM_014362	ENSG00000198130	HIBCH	HIBYLCOAH	3-hydroxyisobutyryl-CoA hydrolase	protein-coding
160582	chr3	30894471	30894830	+	0	NA	promoter-TSS (NM_207359)	promoter-TSS (NM_207359)	11	NM_207359	339896		NM_207359	ENSG00000144644	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase like 1	protein-coding
35423	chr11	1430971	1431200	+	0	NA	intron (NM_001256630, intron 1 of 19)	intron (NM_001256630, intron 1 of 19)	19933	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
176177	chr4	83320621	83320880	+	0	NA	intron (NM_001199830, intron 2 of 10)	intron (NM_001199830, intron 2 of 10)	14063	NM_001199830	10855		NM_006665	ENSG00000173083	HPSE	HPA|HPA1|HPR1|HPSE1|HSE1	heparanase	protein-coding
50879	chr12	49192571	49192930	+	0	NA	Intergenic	Intergenic	-3426	NM_001270400	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
81978	chr16	11881671	11882050	+	0	NA	intron (NM_001130007, intron 11 of 14)	AluJo|SINE|Alu	-30318	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
229249	chr9	115377751	115377850	+	0	NA	intron (NR_163556, intron 5 of 7)	AluY|SINE|Alu	235982	NR_163556	50514		NM_017418	ENSG00000173077	DELEC1	CTS9|DEC1	deleted in esophageal cancer 1	ncRNA
75213	chr15	64841201	64843730	+	0	NA	intron (NM_001195059, intron 1 of 4)	intron (NM_001195059, intron 1 of 4)	550	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
151872	chr22	18711501	18711930	+	0	NA	Intergenic	L1M3c|LINE|L1	-22220	NR_165635	642643		NR_136561	ENSG00000182824	FAM230E	LINC01662	family with sequence similarity 230 member E	ncRNA
190762	chr6	475651	475750	+	0	NA	Intergenic	MER4A|LTR|ERV1	83948	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
35375	chr11	1293471	1294250	+	0	NA	intron (NM_001318512, intron 1 of 4)	intron (NM_001318512, intron 1 of 4)	8930	NM_001318514	54472		NM_019009	ENSG00000078902	TOLLIP	IL-1RAcPIP	toll interacting protein	protein-coding
65017	chr14	39096971	39097430	+	0	NA	intron (NM_006364, intron 1 of 19)	intron (NM_006364, intron 1 of 19)	-5940	NR_146545	105370458		NR_146545	ENSG00000258651	SEC23A-AS1	-	SEC23A antisense RNA 1	ncRNA
54200	chr12	79873321	79873580	+	0	NA	intron (NM_001143885, intron 2 of 25)	Charlie1a|DNA|hAT-Charlie	40461	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
80563	chr16	2843901	2844480	+	0	NA	Intergenic	LTR37A|LTR|ERV1	-1439	NR_026864	124221		NM_178453	ENSG00000291300	PRSS30P	Disp|TMPRSS8|TMPRSS8P	serine protease 30, pseudogene	pseudo
197446	chr6	73840771	73840950	+	0	NA	Intergenic	L1PA2|LINE|L1	144657	NM_133493	135228		NM_133493	ENSG00000156535	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
131260	chr2	96049171	96049330	+	0	NA	Intergenic	Intergenic	-13276	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
139596	chr2	224997721	224997980	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	12690	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
202003	chr6	152575551	152575850	+	0	NA	intron (NM_033071, intron 2 of 145)	MIRb|SINE|MIR	61151	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
212519	chr7	128790601	128792080	+	0	NA	promoter-TSS (NM_001367762)	promoter-TSS (NM_001367762)	-98	NM_001367762	64753		NM_022742	ENSG00000128596	CCDC136	NAG6	coiled-coil domain containing 136	protein-coding
200305	chr6	132826521	132826780	+	0	NA	Intergenic	Intergenic	9431	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
206242	chr7	29190921	29191180	+	0	NA	promoter-TSS (NM_001371262)	promoter-TSS (NM_001371262)	-993	NM_001371263	54504		NM_019029	ENSG00000106066	CPVL	HVLP	carboxypeptidase vitellogenic like	protein-coding
59787	chr13	30303571	30304200	+	0	NA	intron (NM_032116, intron 1 of 10)	intron (NM_032116, intron 1 of 10)	3126	NM_001014380	84056		NM_032116	ENSG00000102781	KATNAL1	-	katanin catalytic subunit A1 like 1	protein-coding
192832	chr6	27132401	27133400	+	0	NA	promoter-TSS (NM_021064)	promoter-TSS (NM_021064)	-105	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
58830	chr12	132844251	132844390	+	0	NA	intron (NM_018223, intron 15 of 17)	AluY|SINE|Alu	-15451	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
79117	chr16	210571	211130	+	0	NA	intron (NM_018032, intron 3 of 8)	AluY|SINE|Alu	18599	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
214284	chr7	149065071	149066630	+	0	NA	Intergenic	CpG	24868	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
93418	chr17	18410351	18410930	+	0	NA	promoter-TSS (NR_104343)	promoter-TSS (NR_104343)	-519	NR_104343	400579		NR_104343	ENSG00000220161	LINC02076	-	long intergenic non-protein coding RNA 2076	ncRNA
46846	chr11	133832221	133832480	+	0	NA	Intergenic	Intergenic	13163	NM_174927	219938		NM_174927	ENSG00000166118	SPATA19	CT132|SPAS1|spergen1	spermatogenesis associated 19	protein-coding
223717	chr8	144458651	144459230	+	0	NA	intron (NM_138496, intron 2 of 4)	intron (NM_138496, intron 2 of 4)	3599	NR_162109	113218512		NR_162109		MIR10400	-	microRNA 10400	ncRNA
76547	chr15	75204421	75205280	+	0	NA	intron (NM_015492, intron 1 of 2)	intron (NM_015492, intron 1 of 2)	2968	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
120421	chr19	43936351	43936450	+	0	NA	Intergenic	MER66D|LTR|ERV1	-1118	NM_003425	7596		NM_003425	ENSG00000124459	ZNF45	KOX5|ZNF13	zinc finger protein 45	protein-coding
226779	chr9	76576251	76576780	+	0	NA	Intergenic	Intergenic	75882	NM_001097636	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
32114	chr10	101219851	101220800	+	0	NA	Intergenic	Intergenic	8635	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
152188	chr22	20106651	20106950	+	0	NA	intron (NM_022720, intron 11 of 13)	intron (NM_022720, intron 11 of 13)	7951	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
67236	chr14	68964101	68964500	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	15002	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
229027	chr9	114156371	114157230	+	0	NA	intron (NM_032888, intron 1 of 60)	intron (NM_032888, intron 1 of 60)	1263	NM_032888	85301		NM_032161	ENSG00000196739	COL27A1	STLS	collagen type XXVII alpha 1 chain	protein-coding
104165	chr17	80409721	80409980	+	0	NA	intron (NR_029376, intron 1 of 1)	Harlequin-int|LTR|ERV1	-5317	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
66433	chr14	61529971	61530130	+	0	NA	intron (NM_006255, intron 11 of 13)	intron (NM_006255, intron 11 of 13)	40144	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
70676	chr14	103086621	103087150	+	0	NA	intron (NM_001330236, intron 2 of 3)	intron (NM_001330236, intron 2 of 3)	2675	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
125541	chr2	15159771	15159930	+	0	NA	Intergenic	MIRb|SINE|MIR	401484	NM_015909	51594		NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	NBAS subunit of NRZ tethering complex	protein-coding
209772	chr7	87236751	87237380	+	0	NA	Intergenic	Intergenic	-16478	NM_001329473	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
139568	chr2	224939801	224940000	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	7149	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
94294	chr17	28725221	28726600	+	0	NA	exon (NM_138463, exon 1 of 4)	exon (NM_138463, exon 1 of 4)	323	NM_138463	116238		NM_138463	ENSG00000160606	TLCD1	-	TLC domain containing 1	protein-coding
202309	chr6	157270191	157270850	+	0	NA	Intergenic	(CCATCA)n|Simple_repeat|Simple_repeat	52999	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
132307	chr2	105294951	105295130	+	0	NA	intron (NM_001328646, intron 4 of 11)	intron (NM_001328646, intron 4 of 11)	34616	NR_137328	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
60687	chr13	43804471	43805300	+	0	NA	Intergenic	Intergenic	-17913	NM_001347965	55068		NM_017993	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
210515	chr7	100215401	100215700	+	0	NA	intron (NR_028038, intron 5 of 6)	intron (NR_028038, intron 5 of 6)	-3698	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
29506	chr10	70608221	70608680	+	0	NA	Intergenic	MLT1A1-int|LTR|ERVL-MaLR	-5662	NM_005041	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
38355	chr11	44595201	44595430	+	0	NA	intron (NM_002231, intron 3 of 9)	intron (NM_002231, intron 3 of 9)	29652	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
136022	chr2	172442771	172443000	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	15299	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
91629	chr17	5411971	5412130	+	0	NA	intron (NM_002532, intron 3 of 16)	LTR78B|LTR|ERV1	-7591	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
95621	chr17	37611571	37611730	+	0	NA	3' UTR (NM_007010, exon 15 of 15).2	3' UTR (NM_007010, exon 15 of 15).2	-2232	NM_001163544	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
98550	chr17	47682651	47683130	+	0	NA	3' UTR (NM_001276453, exon 21 of 21)	3' UTR (NM_001276453, exon 21 of 21)	-12374	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
17041	chr1	156079701	156079900	+	0	NA	intron (NM_001093725, intron 1 of 1)	intron (NM_001093725, intron 1 of 1)	2665	NM_001093725	92312		NM_001093725	ENSG00000254726	MEX3A	MEX-3A|RKHD4|RNF162	mex-3 RNA binding family member A	protein-coding
25934	chr10	11337401	11338950	+	0	NA	intron (NR_126062, intron 1 of 2)	MIR|SINE|MIR	6499	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
232231	chr9	134379901	134380600	+	0	NA	TTS (NR_039816)	TTS (NR_039816)	839	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
119095	chr19	39297601	39298590	+	0	NA	exon (NM_172140, exon 3 of 5)	exon (NM_172140, exon 3 of 5)	1688	NM_172140	282618		NM_172140	ENSG00000182393	IFNL1	IL-29|IL29	interferon lambda 1	protein-coding
159015	chr3	10548171	10548480	+	0	NA	intron (NM_001353564, intron 1 of 20)	intron (NM_001353564, intron 1 of 20)	-42739	NM_001001331	491		NM_001683	ENSG00000157087	ATP2B2	DFNA82|PMCA2|PMCA2a|PMCA2i	ATPase plasma membrane Ca2+ transporting 2	protein-coding
146366	chr20	49270871	49271530	+	0	NA	exon (NM_021035, exon 3 of 14)	exon (NM_021035, exon 3 of 14)	6857	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
145834	chr20	45824021	45825350	+	0	NA	intron (NM_003279, intron 2 of 5)	(CACCCC)n|Simple_repeat|Simple_repeat	2627	NM_003279	7125		NM_003279	ENSG00000101470	TNNC2	CFAP85|CMYP15|FAP85|MYONRI	troponin C2, fast skeletal type	protein-coding
153725	chr22	29298371	29299150	+	0	NA	exon (NM_013986, exon 15 of 18)	exon (NM_013986, exon 15 of 18)	-8263	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
223560	chr8	144258751	144259500	+	0	NA	intron (NM_032450, intron 36 of 43)	intron (NM_032450, intron 36 of 43)	3612	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
238360	chrX	149871801	149872290	+	0	NA	intron (NR_109813, intron 2 of 2)	L1PA13|LINE|L1	-9096	NM_001166400	4107		NM_005364	ENSG00000156009	MAGEA8	CT1.8|MAGE8	MAGE family member A8	protein-coding
118631	chr19	37251621	37252000	+	0	NA	promoter-TSS (NR_110720)	promoter-TSS (NR_110720)	-75	NR_110718	101927667		NR_110718	ENSG00000226686	LINC01535	-	long intergenic non-protein coding RNA 1535	ncRNA
114314	chr19	11984971	11985750	+	0	NA	Intergenic	Intergenic	-2257	NR_134927	101928464		NR_134927	ENSG00000219665	ZNF433-AS1	-	ZNF433 and ZNF878 antisense RNA 1	ncRNA
216008	chr8	8989251	8989650	+	0	NA	Intergenic	Intergenic	-13447	NM_153332	90459		NM_153332	ENSG00000104626	ERI1	3'HEXO|HEXO|HXAL|SEMDGC|SEMDGS|THEX1	exoribonuclease 1	protein-coding
154394	chr22	35302901	35303350	+	0	NA	intron (NR_156428, intron 1 of 13)	intron (NR_156428, intron 1 of 13)	3231	NR_156428	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
56107	chr12	110736321	110736580	+	0	NA	intron (NM_002710, intron 1 of 6)	AluJb|SINE|Alu	6441	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
236929	chrX	97399471	97399630	+	0	NA	intron (NM_007309, intron 25 of 26)	intron (NM_007309, intron 25 of 26)	164985	NR_125391	10824		NR_125391	ENSG00000236256	DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
106927	chr18	26224571	26224950	+	0	NA	Intergenic	Intergenic	-1685	NR_121653	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
129224	chr2	68245401	68246030	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	6817	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
11369	chr1	89639071	89639430	+	0	NA	intron (NM_032270, intron 1 of 2)	AluSc8|SINE|Alu	6130	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
36824	chr11	9759631	9760550	+	0	NA	promoter-TSS (NR_033972)	promoter-TSS (NR_033972)	-557	NR_033972	440028		NR_033972	ENSG00000245522	LINC02709	-	long intergenic non-protein coding RNA 2709	ncRNA
15361	chr1	150073021	150073450	+	0	NA	intron (NR_103998, intron 3 of 13)	intron (NR_103998, intron 3 of 13)	5459	NR_103998	11311		NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
183847	chr5	87069301	87069830	+	0	NA	Intergenic	Intergenic	45389	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
107863	chr18	54946151	54947050	+	0	NA	intron (NM_025214, intron 1 of 11)	intron (NM_025214, intron 1 of 11)	11448	NM_001143829	80323		NM_025214	ENSG00000166510	CCDC68	SE57-1	coiled-coil domain containing 68	protein-coding
110883	chr19	2638351	2638750	+	0	NA	intron (NM_052847, intron 2 of 4)	G-rich|Low_complexity|Low_complexity	7835	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
223689	chr8	144420121	144420450	+	0	NA	Intergenic	AluY|SINE|Alu	-3441	NM_130849	55630		NM_017767	ENSG00000147804	SLC39A4	AEZ|AWMS2|ZIP4	solute carrier family 39 member 4	protein-coding
99502	chr17	50199301	50200200	+	0	NA	intron (NM_000088, intron 2 of 50)	CpG-11414	1881	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
128934	chr2	64532371	64532700	+	0	NA	intron (NM_203437, intron 1 of 9)	L2b|LINE|L2	7022	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
90268	chr17	980891	981450	+	0	NA	Intergenic	Intergenic	-1394	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
179370	chr4	183443921	183445500	+	0	NA	promoter-TSS (NM_017632)	promoter-TSS (NM_017632)	74	NM_017632	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
218265	chr8	42217021	42217500	+	0	NA	Intergenic	Intergenic	-9695	NM_001319189	5327		NM_000930	ENSG00000104368	PLAT	T-PA|TPA	plasminogen activator, tissue type	protein-coding
166020	chr3	108302601	108302800	+	0	NA	5' UTR (NM_007072, exon 1 of 10)	5' UTR (NM_007072, exon 1 of 10)	215	NM_007072	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
58728	chr12	132588771	132589430	+	0	NA	Intergenic	Intergenic	7103	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
179845	chr5	491851	492550	+	0	NA	intron (NM_001284351, intron 1 of 16)	intron (NM_001284351, intron 1 of 16)	18964	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
11167	chr1	87061721	87062000	+	0	NA	intron (NM_001134492, intron 1 of 4)	L1MB5|LINE|L1	-67905	NR_026988	339524		NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
100533	chr17	62490871	62491500	+	0	NA	intron (NM_001375269, intron 2 of 20)	intron (NM_001375269, intron 2 of 20)	10072	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
163513	chr3	51396401	51397230	+	0	NA	3' UTR (NM_014703, exon 26 of 26)	3' UTR (NM_014703, exon 26 of 26)	5530	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
101636	chr17	68236471	68236700	+	0	NA	intron (NM_001346472, intron 2 of 7)	AluSx1|SINE|Alu	-10989	NM_001346474	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
132665	chr2	108752421	108752930	+	0	NA	intron (NM_006267, intron 12 of 28)	AluY|SINE|Alu	33193	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
9463	chr1	50450971	50451500	+	0	NA	intron (NM_007051, intron 18 of 18)	A-rich|Low_complexity|Low_complexity	-27792	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
33059	chr10	110874101	110874800	+	0	NA	intron (NM_145341, intron 1 of 12)	intron (NM_145341, intron 1 of 12)	2522	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
56309	chr12	112424421	112425000	+	0	NA	intron (NM_002834, intron 1 of 15)	intron (NM_002834, intron 1 of 15)	5763	NM_001330437	5781		NM_002834	ENSG00000179295	PTPN11	BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2	protein tyrosine phosphatase non-receptor type 11	protein-coding
145007	chr20	37690971	37691130	+	0	NA	Intergenic	L2a|LINE|L2	-2905	NM_001281495	56259		NM_030877	ENSG00000132792	CTNNBL1	C20orf33|IMD99|NAP|P14L|PP8304|dJ633O20.1	catenin beta like 1	protein-coding
201130	chr6	142888621	142888880	+	0	NA	intron (NM_006734, intron 1 of 9)	L2c|LINE|L2	56426	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
197479	chr6	75579651	75580350	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-21509	NM_001304792	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
88249	chr16	82459721	82460130	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-167044	NM_001257	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
199677	chr6	122471151	122472200	+	0	NA	promoter-TSS (NM_001270393)	promoter-TSS (NM_001270393)	132	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
229276	chr9	120579651	120581450	+	0	NA	promoter-TSS (NR_073555)	promoter-TSS (NR_073555)	-380	NM_001272039	55755		NM_018249	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
183341	chr5	76746651	76746750	+	0	NA	Intergenic	AluJo|SINE|Alu	30574	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
31503	chr10	96677101	96677700	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	43114	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
75335	chr15	65382221	65382880	+	0	NA	3' UTR (NM_020962, exon 20 of 20)	3' UTR (NM_020962, exon 20 of 20)	-4548	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
69761	chr14	99158801	99159200	+	0	NA	Intergenic	Intergenic	113197	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
32535	chr10	103128901	103129100	+	0	NA	intron (NM_001351176, intron 2 of 17)	SVA_F|Retroposon|SVA	24821	NM_001351191	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
82647	chr16	19130871	19131230	+	0	NA	Intergenic	Intergenic	17086	NM_001034841	162073		NM_001034841	ENSG00000205730	ITPRIPL2	D1C	ITPRIP like 2	protein-coding
167356	chr3	128767021	128767780	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	41217	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
64704	chr14	34047101	34047300	+	0	NA	Intergenic	Intergenic	-96126	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
205401	chr7	16398951	16399350	+	0	NA	intron (NR_160656, intron 2 of 7)	intron (NR_160656, intron 2 of 7)	22388	NM_001101417	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
238736	chrX	154277651	154277830	+	0	NA	intron (NM_001205201, intron 3 of 4)	(TC)n|Simple_repeat|Simple_repeat	17361	NM_001586	1527		NM_001586	ENSG00000278057	TEX28	CXorf2|MRX99|TEX28P1|TEX28P2|fTEX	testis expressed 28	protein-coding
149533	chr21	33022571	33022730	+	0	NA	Intergenic	Intergenic	-3285	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
71910	chr15	22767951	22768250	+	0	NA	exon (NM_001365371, exon 13 of 13)	exon (NM_001365371, exon 13 of 13)	8032	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
93850	chr17	21000371	21000530	+	0	NA	3' UTR (NM_015276, exon 13 of 13)	3' UTR (NM_015276, exon 13 of 13)	42561	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
92330	chr17	8149501	8150100	+	0	NA	exon (NM_002616, exon 5 of 23)	exon (NM_002616, exon 5 of 23)	2604	NM_002616	5187		NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian regulator 1	protein-coding
146730	chr20	50729171	50729530	+	0	NA	Intergenic	Intergenic	-2230	NM_032521	84612		NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding
17610	chr1	156909821	156910680	+	0	NA	exon (NM_001353683, exon 15 of 24)	exon (NM_001353683, exon 15 of 24)	-10382	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
77802	chr15	88274651	88274830	+	0	NA	Intergenic	Intergenic	-18001	NM_002530	4916		NM_002530	ENSG00000140538	NTRK3	GP145-TrkC|TRKC|gp145(trkC)	neurotrophic receptor tyrosine kinase 3	protein-coding
83688	chr16	28422701	28422900	+	0	NA	intron (NM_001199142, intron 1 of 21)	AluSx1|SINE|Alu	3654	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
58183	chr12	124995971	124996130	+	0	NA	intron (NM_080626, intron 1 of 2)	AluSx1|SINE|Alu	2405	NM_080626	140707		NM_080626	ENSG00000184992	BRI3BP	BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19	BRI3 binding protein	protein-coding
86222	chr16	58110821	58111880	+	0	NA	Intergenic	Intergenic	18031	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
132801	chr2	110383221	110383800	+	0	NA	non-coding (NR_046110, exon 2 of 4).2	non-coding (NR_046110, exon 2 of 4).2	1015	NR_046110	440894		NR_046110	ENSG00000204588	LINC01123	-	long intergenic non-protein coding RNA 1123	ncRNA
42384	chr11	68854951	68856180	+	0	NA	Intergenic	CpG	-13634	NM_001031847	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
78713	chr15	98519021	98519280	+	0	NA	Intergenic	Intergenic	-4814	NM_182562	283777		NM_182562	ENSG00000293555	FAM169BP	FAM169B	protein FAM169B	pseudo
5161	chr1	24921551	24921650	+	0	NA	intron (NM_001031680, intron 3 of 5)	intron (NM_001031680, intron 3 of 5)	-2184	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
124429	chr19	58472351	58472650	+	0	NA	3' UTR (NM_014347, exon 4 of 4)	3' UTR (NM_014347, exon 4 of 4)	-3852	NM_017908	55663		NM_017908	ENSG00000083838	ZNF446	ZKSCAN20|ZSCAN30|ZSCAN52	zinc finger protein 446	protein-coding
214798	chr7	151170501	151170900	+	0	NA	Intergenic	AluSq|SINE|Alu	-3152	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
156731	chr22	41804271	41804430	+	0	NA	intron (NM_001382346, intron 2 of 7)	MER65-int|LTR|ERV1	3671	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
174550	chr4	40209221	40209830	+	0	NA	intron (NM_001278362, intron 2 of 3)	AluJb|SINE|Alu	12494	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
155287	chr22	38106721	38106980	+	0	NA	intron (NM_025045, intron 4 of 13)	intron (NM_025045, intron 4 of 13)	3834	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
141522	chr2	241217221	241219200	+	0	NA	intron (NM_001370694, intron 20 of 24)	intron (NM_001370694, intron 20 of 24)	29533	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
79319	chr16	564451	564630	+	0	NA	intron (NM_145270, intron 2 of 2)	intron (NM_145270, intron 2 of 2)	-2465	NM_001301159	283948		NM_176677	ENSG00000257108	NHLRC4	-	NHL repeat containing 4	protein-coding
186816	chr5	139388601	139389000	+	0	NA	intron (NM_016459, intron 1 of 3)	intron (NM_016459, intron 1 of 3)	1113	NM_016459	51237		NM_016459	ENSG00000170476	MZB1	MEDA-7|PACAP|pERp1	marginal zone B and B1 cell specific protein	protein-coding
173060	chr4	6092271	6092430	+	0	NA	intron (NM_001306134, intron 2 of 11)	intron (NM_001306134, intron 2 of 11)	-73804	NM_001364690	389197		NM_207405	ENSG00000181215	C4orf50	-	chromosome 4 open reading frame 50	protein-coding
7854	chr1	36371401	36371850	+	0	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	14299	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
216464	chr8	19682171	19682980	+	0	NA	promoter-TSS (NM_018371)	promoter-TSS (NM_018371)	8	NM_018371	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
41072	chr11	65504921	65505050	+	0	NA	non-coding (NR_002819, exon 1 of 1)	non-coding (NR_002819, exon 1 of 1)	-1132	NR_144569	109136578		NR_144569	ENSG00000274072	MASCRNA	-	MALAT1-associated small cytoplasmic RNA	scRNA
186531	chr5	138438101	138440300	+	0	NA	non-coding (NR_073449, exon 1 of 8)	non-coding (NR_073449, exon 1 of 8)	143	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
113812	chr19	10584701	10585100	+	0	NA	intron (NM_001300887, intron 1 of 11)	intron (NM_001300887, intron 1 of 11)	2412	NM_005498	10053		NM_005498	ENSG00000129354	AP1M2	AP1-mu2|HSMU1B|MU-1B|MU1B|mu2	adaptor related protein complex 1 subunit mu 2	protein-coding
153892	chr22	30293451	30294150	+	0	NA	exon (NM_001204240, exon 8 of 9)	exon (NM_001204240, exon 8 of 9)	-4295	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
187188	chr5	140655801	140656200	+	0	NA	intron (NM_006083, intron 9 of 19)	intron (NM_006083, intron 9 of 19)	8156	NR_037428	100500820		NR_037428	ENSG00000284325	MIR3655	-	microRNA 3655	ncRNA
214766	chr7	151082571	151083960	+	0	NA	promoter-TSS (NM_031434)	promoter-TSS (NM_031434)	228	NM_001136044	83590		NM_031434	ENSG00000164897	TMUB1	C7orf21|DULP|HOPS|SB144	transmembrane and ubiquitin like domain containing 1	protein-coding
103458	chr17	78316971	78317330	+	0	NA	Intergenic	Intergenic	-38658	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
3158	chr1	12602221	12602630	+	0	NA	intron (NM_004753, intron 1 of 5)	intron (NM_004753, intron 1 of 5)	-5812	NM_001324370	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
217719	chr8	30246351	30246450	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	90031	NM_006571	10671		NM_006571	ENSG00000104671	DCTN6	WS-3|WS3|p27	dynactin subunit 6	protein-coding
13237	chr1	112681101	112681300	+	0	NA	intron (NM_001369507, intron 1 of 19)	intron (NM_001369507, intron 1 of 19)	6462	NM_001369507	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
111365	chr19	3692371	3693500	+	0	NA	intron (NM_001300849, intron 1 of 16)	L2a|LINE|L2	7533	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
196324	chr6	43105421	43105730	+	0	NA	intron (NM_001270398, intron 1 of 19)	MLT1C|LTR|ERVL-MaLR	28761	NM_001270398	5754		NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
128162	chr2	48531371	48531530	+	0	NA	intron (NM_001198595, intron 2 of 4)	intron (NM_001198595, intron 2 of 4)	1281	NM_001198595	11037		NM_006873	ENSG00000243244	STON1	SALF|SBLF|STN1|STNB1	stonin 1	protein-coding
102161	chr17	75128451	75128880	+	0	NA	intron (NM_024585, intron 2 of 2)	intron (NM_024585, intron 2 of 2)	3077	NR_045513	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
125325	chr2	10789701	10789900	+	0	NA	exon (NM_005742, exon 8 of 13)	exon (NM_005742, exon 8 of 13)	22985	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
101114	chr17	65018201	65018630	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	37359	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
179527	chr4	184828121	184828630	+	0	NA	Intergenic	MIR3|SINE|MIR	-2407	NM_001381885	2180		NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long chain family member 1	protein-coding
224444	chr9	15403201	15403430	+	0	NA	Intergenic	Intergenic	-19469	NM_001039697	6619		NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
47219	chr12	907171	907550	+	0	NA	intron (NM_018979, intron 26 of 27)	intron (NM_018979, intron 26 of 27)	25716	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
37287	chr11	14713371	14714350	+	0	NA	intron (NM_001363569, intron 1 of 15)	L2b|LINE|L2	70056	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
127900	chr2	46276071	46276750	+	0	NA	Intergenic	Intergenic	-20997	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
84256	chr16	30020801	30022100	+	0	NA	Intergenic	(GGAGATG)n|Simple_repeat|Simple_repeat	-1748	NM_001353379	146378		NM_001109659	ENSG00000167194	C16orf92	FIMP	chromosome 16 open reading frame 92	protein-coding
238113	chrX	136641871	136642430	+	0	NA	non-coding (NR_038461, exon 3 of 3)	non-coding (NR_038461, exon 3 of 3)	2607	NR_038461	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
156959	chr22	42365471	42365830	+	0	NA	intron (NR_120595, intron 1 of 1)	intron (NR_120595, intron 1 of 1)	3558	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
130669	chr2	86336471	86336630	+	0	NA	intron (NM_001164730, intron 1 of 6)	intron (NM_001164730, intron 1 of 6)	1076	NM_001164731	65055		NM_022912	ENSG00000068615	REEP1	C2orf23|DSMA6|HMN5B|HMND12|HMNR6|SPG31|Yip2a	receptor accessory protein 1	protein-coding
200667	chr6	137164951	137166350	+	0	NA	intron (NM_052962, intron 1 of 6)	HERV1_I-int|LTR|ERV1	7994	NM_181309	116379		NM_052962	ENSG00000164485	IL22RA2	CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16	interleukin 22 receptor subunit alpha 2	protein-coding
217687	chr8	30117321	30117850	+	0	NA	intron (NM_001128208, intron 3 of 3)	intron (NM_001128208, intron 3 of 3)	22177	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
161262	chr3	39262651	39263150	+	0	NA	TTS (NM_001171172)	TTS (NM_001171172)	17136	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
227156	chr9	86349971	86350730	+	0	NA	intron (NM_024617, intron 2 of 26)	AluSc8|SINE|Alu	4060	NM_001185074	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
231183	chr9	129909701	129909900	+	0	NA	intron (NM_001363755, intron 11 of 15)	AluSx|SINE|Alu	40195	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
215397	chr7	157490021	157490880	+	0	NA	intron (NR_110157, intron 2 of 3)	AluSg4|SINE|Alu	24219	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
5810	chr1	26597551	26598280	+	0	NA	Intergenic	Intergenic	43373	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
30636	chr10	80449571	80449930	+	0	NA	Intergenic	Intergenic	-4560	NM_001351267	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
234235	chrX	13030421	13030980	+	0	NA	Intergenic	Intergenic	13920	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
12949	chr1	110868651	110869150	+	0	NA	Intergenic	L1PA15|LINE|L1	-2299	NM_001040033	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
127650	chr2	43152951	43154230	+	0	NA	Intergenic	Intergenic	-51145	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
168963	chr3	152386071	152386830	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-45460	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
156609	chr22	41562951	41563250	+	0	NA	intron (NM_014460, intron 1 of 3)	intron (NM_014460, intron 1 of 3)	2090	NM_014460	27254		NM_014460	ENSG00000172346	CSDC2	PIPPIN|dJ347H13.2	cold shock domain containing C2	protein-coding
108184	chr18	63073521	63073980	+	0	NA	Intergenic	Intergenic	246019	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
219489	chr8	73877521	73877780	+	0	NA	intron (NM_001001481, intron 1 of 6)	intron (NM_001001481, intron 1 of 6)	1212	NR_073120	55284		NM_018299	ENSG00000104343	UBE2W	UBC-16|UBC16	ubiquitin conjugating enzyme E2 W	protein-coding
86714	chr16	67554771	67554930	+	0	NA	Intergenic	AluSc8|SINE|Alu	7459	NR_158165	107984813		NR_158165	ENSG00000259804	CTCF-DT	-	CTCF divergent transcript	ncRNA
130580	chr2	85838871	85839230	+	0	NA	TTS (NM_001354238)	TTS (NM_001354238)	15121	NM_001354248	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
226746	chr9	76027251	76027750	+	0	NA	intron (NM_006200, intron 5 of 20)	intron (NM_006200, intron 5 of 20)	136827	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
237061	chrX	103464501	103465100	+	0	NA	Intergenic	Intergenic	54689	NM_080879	142684		NM_080879	ENSG00000172476	RAB40A	RAR2|RAR2A	RAB40A, member RAS oncogene family	protein-coding
53530	chr12	67161371	67161600	+	0	NA	Intergenic	Intergenic	-65201	NR_120490	102724421		NR_120490	ENSG00000257083	LOC102724421	-	uncharacterized LOC102724421	ncRNA
233755	chrX	1393651	1394500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1962	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
86675	chr16	67493651	67494550	+	0	NA	Intergenic	AluJb|SINE|Alu	-10553	NM_001138	181		NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related neuropeptide	protein-coding
50661	chr12	48821671	48822730	+	0	NA	intron (NM_001206915, intron 1 of 11)	intron (NM_001206915, intron 1 of 11)	3704	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
236515	chrX	72046351	72047050	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	2291	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
167392	chr3	128882021	128882280	+	0	NA	intron (NR_033426, intron 1 of 17)	FRAM|SINE|Alu	2530	NM_014049	28976		NM_014049	ENSG00000177646	ACAD9	MC1DN20|NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
188680	chr5	157275551	157276000	+	0	NA	intron (NM_014376, intron 1 of 30)	L1MB8|LINE|L1	6451	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
86351	chr16	66519001	66519580	+	0	NA	intron (NR_073520, intron 5 of 8)	AluSz|SINE|Alu	30832	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
110022	chr19	1448021	1448350	+	0	NA	Intergenic	Intergenic	-1936	NM_005883	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
103575	chr17	78690171	78691430	+	0	NA	intron (NM_017456, intron 10 of 12)	MamRTE1|LINE|RTE-BovB	26232	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
123484	chr19	54186651	54186950	+	0	NA	intron (NM_001146056, intron 2 of 5).4	MIRb|SINE|MIR	2780	NM_024298	79143		NM_024298	ENSG00000125505	MBOAT7	BB1|LENG4|LPIAT|LPIAT1|LPLAT|LPLAT11|LRC4|MBOA7|MRT57|OACT7|hMBOA-7	membrane bound O-acyltransferase domain containing 7	protein-coding
8117	chr1	39216671	39217180	+	0	NA	intron (NM_012090, intron 1 of 92)	MIR|SINE|MIR	132758	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
79105	chr16	196401	197000	+	0	NA	intron (NM_018032, intron 6 of 8)	AluSz6|SINE|Alu	16241	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
80053	chr16	1969751	1970300	+	0	NA	Intergenic	AluJb|SINE|Alu	-2028	NM_006453	10607		NM_006453	ENSG00000183751	TBL3	SAZD|UTP13	transducin beta like 3	protein-coding
33820	chr10	123582021	123582400	+	0	NA	Intergenic	Intergenic	-84145	NM_153442	2849		NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding
41982	chr11	67376971	67378330	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-3473	NM_001166212	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
161258	chr3	39257921	39258180	+	0	NA	Intergenic	L2|LINE|L2	21986	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
158835	chr3	9791821	9794080	+	0	NA	promoter-TSS (NR_103488)	promoter-TSS (NR_103488)	61	NR_103488	10474		NM_006354	ENSG00000171148	TADA3	ADA3|NGG1|STAF54|TADA3L|hADA3	transcriptional adaptor 3	protein-coding
126473	chr2	28367821	28368850	+	0	NA	Intergenic	LTR85a|LTR|Gypsy?	-24523	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
227343	chr9	89462471	89463230	+	0	NA	intron (NM_001371194, intron 1 of 15)	AluJr|SINE|Alu	17040	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
188569	chr5	157108601	157109400	+	0	NA	promoter-TSS (NM_032782)	promoter-TSS (NM_032782)	44	NM_032782	84868		NM_032782	ENSG00000135077	HAVCR2	CD366|HAVcr-2|KIM-3|SPTCL|TIM3|TIMD-3|TIMD3|Tim-3	hepatitis A virus cellular receptor 2	protein-coding
194074	chr6	31875901	31876380	+	0	NA	intron (NM_001178045, intron 2 of 20).5	intron (NM_001178045, intron 2 of 20).5	1531	NM_001178045	80736		NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1	solute carrier family 44 member 4	protein-coding
181610	chr5	43609801	43610080	+	0	NA	intron (NM_001331026, intron 2 of 20)	L2|LINE|L2	-6710	NR_073113	100652772		NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
73778	chr15	45632151	45632730	+	0	NA	intron (NM_001271213, intron 2 of 10)	AluSx3|SINE|Alu	1292	NM_001271213	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
109131	chr18	80170851	80171630	+	0	NA	non-coding (NR_028339, exon 3 of 3)	non-coding (NR_028339, exon 3 of 3)	23316	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
176057	chr4	82425351	82426080	+	0	NA	intron (NR_003249, intron 7 of 8)	intron (NR_003249, intron 7 of 8)	4510	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
197626	chr6	83199651	83199750	+	0	NA	TTS (NM_001322336)	TTS (NM_001322336)	-5800	NM_001199917	5238		NM_015599	ENSG00000013375	PGM3	AGM1|IMD23|PAGM|PGM 3	phosphoglucomutase 3	protein-coding
182493	chr5	62720071	62720230	+	0	NA	Intergenic	Intergenic	141331	NM_181506	100130733		NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
79498	chr16	783651	784550	+	0	NA	TTS (NM_001324411)	TTS (NM_001324411)	4281	NM_001369658	113000		NM_058192	ENSG00000007376	RPUSD1	C16orf40|RLUCL	RNA pseudouridine synthase domain containing 1	protein-coding
165682	chr3	101871971	101872330	+	0	NA	Intergenic	AluSp|SINE|Alu	22636	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
1338	chr1	2470221	2470680	+	0	NA	intron (NM_001303012, intron 1 of 21)	intron (NM_001303012, intron 1 of 21)	2999	NM_001303012	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
65005	chr14	38209021	38209650	+	0	NA	5' UTR (NM_001049, exon 3 of 3)	5' UTR (NM_001049, exon 3 of 3)	1431	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
78631	chr15	94243901	94244300	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	12539	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
227227	chr9	88990721	88991630	+	0	NA	promoter-TSS (NM_005226)	promoter-TSS (NM_005226)	-293	NM_005226	1903		NM_005226	ENSG00000213694	S1PR3	C9orf108|C9orf47|EDG-3|EDG3|LPB3|S1P3|bA791O21.3	sphingosine-1-phosphate receptor 3	protein-coding
224170	chr9	5188101	5188500	+	0	NA	Intergenic	L1PA10|LINE|L1	-2661	NM_007179	11172		NM_007179	ENSG00000120210	INSL6	RIF1	insulin like 6	protein-coding
136883	chr2	189295621	189295880	+	0	NA	Intergenic	MIRb|SINE|MIR	-115989	NM_000393	1290		NM_000393	ENSG00000204262	COL5A2	EDSC|EDSCL2	collagen type V alpha 2 chain	protein-coding
124676	chr2	3379471	3380700	+	0	NA	intron (NM_016030, intron 1 of 11)	CpG	391	NM_016030	51112		NM_016030	ENSG00000171853	TRAPPC12	CGI-87|PEBAS|TTC-15|TTC15	trafficking protein particle complex subunit 12	protein-coding
128158	chr2	48447471	48447730	+	0	NA	intron (NM_001193475, intron 1 of 19)	MamRTE1|LINE|RTE-BovB	6831	NM_001193475	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
175312	chr4	68311801	68312430	+	0	NA	3' UTR (NM_133370, exon 16 of 16)	3' UTR (NM_133370, exon 16 of 16)	37975	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
150130	chr21	37565751	37566150	+	0	NA	Intergenic	MER51A|LTR|ERV1	145651	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
230008	chr9	126981751	126982700	+	0	NA	intron (NM_001190729, intron 4 of 17)	MLT1F|LTR|ERVL-MaLR	20000	NM_001366401	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
8022	chr1	38031701	38031900	+	0	NA	Intergenic	Intergenic	14993	NM_002699	5453		NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
210929	chr7	101237201	101237400	+	0	NA	intron (NM_014343, intron 1 of 4)	intron (NM_014343, intron 1 of 4)	502	NM_014343	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
84953	chr16	31364321	31365780	+	0	NA	intron (NM_000887, intron 14 of 29)	L1MB7|LINE|L1	9874	NM_000887	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
3733	chr1	16630871	16631030	+	0	NA	promoter-TSS (NR_026752)	promoter-TSS (NR_026752)	-44	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
127024	chr2	37080871	37081630	+	0	NA	intron (NM_019024, intron 2 of 35)	L1PA5|LINE|L1	3122	NM_019024	54497		NM_019024	ENSG00000008869	HEATR5B	p200|p200a	HEAT repeat containing 5B	protein-coding
103462	chr17	78323351	78323650	+	0	NA	Intergenic	Intergenic	36167	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
164527	chr3	63917771	63918280	+	0	NA	intron (NM_001177387, intron 3 of 12)	intron (NM_001177387, intron 3 of 12)	5913	NM_001377406	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
133874	chr2	129689771	129690130	+	0	NA	Intergenic	L1MB8|LINE|L1	187541	NR_149127	105373615		NR_149127	ENSG00000229536	LINC02572	-	long intergenic non-protein coding RNA 2572	ncRNA
157215	chr22	43185371	43185530	+	0	NA	intron (NM_015140, intron 1 of 13)	intron (NM_015140, intron 1 of 13)	1684	NM_015140	23170		NM_015140	ENSG00000100304	TTLL12	dJ526I14.2	tubulin tyrosine ligase like 12	protein-coding
117295	chr19	19487271	19488400	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	27713	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
97007	chr17	42294051	42294150	+	0	NA	intron (NM_003152, intron 5 of 19)	AluSx1|SINE|Alu	6044	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
14515	chr1	144813471	144813830	+	0	NA	intron (NR_104189, intron 2 of 3).2	TAR1|Satellite|telo	95479	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
206814	chr7	37052671	37052850	+	0	NA	intron (NM_014800, intron 15 of 21)	intron (NM_014800, intron 15 of 21)	54964	NR_104120	100861514		NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
140131	chr2	231545201	231546280	+	0	NA	Intergenic	Intergenic	-15295	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
73941	chr15	51681271	51681630	+	0	NA	promoter-TSS (NM_001165257)	promoter-TSS (NM_001165257)	-53	NM_013243	29106		NM_013243	ENSG00000104112	SCG3	SGIII	secretogranin III	protein-coding
162347	chr3	47801301	47801500	+	0	NA	Intergenic	Intergenic	-1509	NM_014966	22907		NM_014966	ENSG00000132153	DHX30	DDX30|NEDMIAL|RETCOR	DExH-box helicase 30	protein-coding
62746	chr13	106565971	106566130	+	0	NA	intron (NM_018011, intron 1 of 3)	intron (NM_018011, intron 1 of 3)	2087	NM_018011	55082		NM_018011	ENSG00000134884	ARGLU1	-	arginine and glutamate rich 1	protein-coding
41791	chr11	66858091	66858780	+	0	NA	exon (NM_024036, exon 1 of 2)	exon (NM_024036, exon 1 of 2)	1371	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
45799	chr11	119333101	119333330	+	0	NA	Intergenic	(AACAC)n|Simple_repeat|Simple_repeat	-1312	NM_032015	79102		NM_032015	ENSG00000173456	RNF26	-	ring finger protein 26	protein-coding
162223	chr3	47055521	47055880	+	0	NA	intron (NR_146158, intron 16 of 21)	AluJr|SINE|Alu	44158	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
1940	chr1	6496121	6496450	+	0	NA	intron (NM_198681, intron 2 of 21)	intron (NM_198681, intron 2 of 21)	946	NM_001265592	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
59545	chr13	27268701	27268900	+	0	NA	Intergenic	AluYa5|SINE|Alu	-2030	NM_206827	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
93029	chr17	17267171	17267330	+	0	NA	intron (NM_003653, intron 5 of 11)	AluY|SINE|Alu	13448	NM_001199125	8533		NM_003653	ENSG00000141030	COPS3	CSN3|SGN3	COP9 signalosome subunit 3	protein-coding
172749	chr4	2846201	2846550	+	0	NA	intron (NM_001286645, intron 1 of 17)	L1MC5|LINE|L1	2225	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
184211	chr5	95957951	95958650	+	0	NA	intron (NM_012081, intron 1 of 11)	intron (NM_012081, intron 1 of 11)	3551	NM_012081	22936		NM_012081	ENSG00000118985	ELL2	MRCCAT1	elongation factor for RNA polymerase II 2	protein-coding
178271	chr4	143899151	143899250	+	0	NA	intron (NM_002102, intron 1 of 3)	intron (NM_002102, intron 1 of 3)	6359	NM_002102	2996		NM_002102	ENSG00000197465	GYPE	GPE|GYPA|MNS|MiIX	glycophorin E (MNS blood group)	protein-coding
139635	chr2	225989301	225989500	+	0	NA	Intergenic	AluSc|SINE|Alu	-153394	NR_046102	646736		NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
68682	chr14	90369001	90369350	+	0	NA	Intergenic	Intergenic	-27327	NM_001363669	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
210194	chr7	98879601	98880430	+	0	NA	intron (NM_001375524, intron 1 of 72)	intron (NM_001375524, intron 1 of 72)	1483	NM_001375524	8295		NM_003496	ENSG00000196367	TRRAP	DEDDFA|DFNA75|PAF350/400|PAF400|STAF40|TR-AP|Tra1	transformation/transcription domain associated protein	protein-coding
76785	chr15	77013701	77014830	+	0	NA	intron (NM_001321136, intron 2 of 15)	MIRb|SINE|MIR	19139	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
56115	chr12	110744971	110746280	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-2734	NM_002710	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
166904	chr3	124835051	124835850	+	0	NA	intron (NM_001354766, intron 5 of 13)	intron (NM_001354766, intron 5 of 13)	51915	NM_002213	3693		NM_002213	ENSG00000082781	ITGB5	-	integrin subunit beta 5	protein-coding
164845	chr3	71039151	71039880	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	25409	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
138091	chr2	202237021	202237330	+	0	NA	intron (NR_163943, intron 1 of 5)	AluSc5|SINE|Alu	1422	NM_003352	7341		NM_003352	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin like modifier 1	protein-coding
151667	chr22	17091601	17091800	+	0	NA	intron (NM_014339, intron 1 of 12)	HAL1|LINE|L1	6700	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
164370	chr3	58179121	58179780	+	0	NA	Intergenic	MIRb|SINE|MIR	-8815	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
98095	chr17	45600121	45601100	+	0	NA	non-coding (NR_026901, exon 1 of 1)	non-coding (NR_026901, exon 1 of 1)	1252	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
153856	chr22	30222521	30222850	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-16509	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
60394	chr13	40955421	40956200	+	0	NA	intron (NM_001370329, intron 4 of 9)	SVA_D|Retroposon|SVA	26472	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
212925	chr7	130920251	130920630	+	0	NA	intron (NR_109780, intron 3 of 3)	intron (NR_109780, intron 3 of 3)	6976	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
216016	chr8	9065401	9066200	+	0	NA	intron (NM_001354638, intron 6 of 7)	intron (NM_001354638, intron 6 of 7)	-7170	NR_145772	109616996		NR_145772		SNORD3I	-	small nucleolar RNA, C/D box 3I	snoRNA
91576	chr17	5195771	5196130	+	0	NA	intron (NR_152840, intron 1 of 5)	MER21B|LTR|ERVL	3943	NR_152840	100130950		NR_034082	ENSG00000261879	ZNF594-DT	-	ZNF594 divergent transcript	ncRNA
46153	chr11	123057701	123058280	+	0	NA	TTS (NR_003125)	TTS (NR_003125)	166	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
94541	chr17	29582651	29583150	+	0	NA	intron (NM_001085454, intron 3 of 20)	intron (NM_001085454, intron 3 of 20)	6748	NM_014030	28964		NM_014030	ENSG00000108262	GIT1	p95-APP1	GIT ArfGAP 1	protein-coding
92172	chr17	7710771	7710930	+	0	NA	3' UTR (NM_001406, exon 5 of 5)	3' UTR (NM_001406, exon 5 of 5)	5648	NM_001406	1949		NM_001406	ENSG00000108947	EFNB3	EFL6|EPLG8|LERK8	ephrin B3	protein-coding
127942	chr2	46539171	46539330	+	0	NA	intron (NM_001371283, intron 1 of 3)	intron (NM_001371283, intron 1 of 3)	-3240	NM_012249	23433		NM_012249	ENSG00000119729	RHOQ	ARHQ|HEL-S-42|RASL7A|TC10|TC10A	ras homolog family member Q	protein-coding
11855	chr1	92989421	92989680	+	0	NA	Intergenic	Intergenic	-28028	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
170745	chr3	188335871	188336030	+	0	NA	intron (NR_164692, intron 2 of 9)	L1MA5|LINE|L1	123054	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
4975	chr1	24189121	24189830	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2186	NM_170743	163702		NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	interferon lambda receptor 1	protein-coding
166654	chr3	120025651	120025750	+	0	NA	intron (NM_001146156, intron 1 of 10)	HAL1b|LINE|L1	58948	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
222147	chr8	132673401	132674030	+	0	NA	intron (NM_012472, intron 1 of 11)	intron (NM_012472, intron 1 of 11)	1830	NR_135908	23639		NM_012472	ENSG00000129295	DNAAF11	CILD19|LRRC6|LRTP|TSLRP|tilB	dynein axonemal assembly factor 11	protein-coding
13303	chr1	113388271	113388930	+	0	NA	Intergenic	Intergenic	-1915	NM_001142782	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
106830	chr18	24011101	24012200	+	0	NA	intron (NR_110796, intron 2 of 5)	intron (NR_110796, intron 2 of 5)	-3104	NM_001243425	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
98060	chr17	45461521	45462530	+	0	NA	intron (NR_027782, intron 4 of 10)	intron (NR_027782, intron 4 of 10)	13410	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
207435	chr7	44560601	44561000	+	0	NA	Intergenic	Intergenic	13738	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
122997	chr19	50909801	50910000	+	0	NA	intron (NM_001302961, intron 1 of 4)	intron (NM_001302961, intron 1 of 4)	838	NM_001302961	9622		NM_004917	ENSG00000167749	KLK4	AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein	kallikrein related peptidase 4	protein-coding
215615	chr7	159197071	159198130	+	0	NA	Intergenic	Intergenic	-52643	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
158769	chr3	9404701	9405080	+	0	NA	intron (NM_001349451, intron 1 of 25)	intron (NM_001349451, intron 1 of 25)	7275	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
148499	chr20	64071971	64072530	+	0	NA	TTS (NM_003195)	TTS (NM_003195)	4760	NR_106871	102466741		NR_106871	ENSG00000274034	MIR6813	hsa-mir-6813	microRNA 6813	ncRNA
93197	chr17	17814351	17814780	+	0	NA	promoter-TSS (NR_030361)	promoter-TSS (NR_030361)	-634	NR_030361	693120		NR_030361	ENSG00000207839	MIR33B	MIRN33B|hsa-mir-33b|mir-33b	microRNA 33b	ncRNA
186977	chr5	139696901	139698050	+	0	NA	Intergenic	CpG	22032	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
177576	chr4	119452401	119452930	+	0	NA	intron (NR_135112, intron 1 of 1)	intron (NR_135112, intron 1 of 1)	1963	NR_135112	101926918		NR_135112	ENSG00000291202	GTF2IP12	-	general transcription factor IIi pseudogene 12	pseudo
142563	chr20	5223001	5223380	+	0	NA	Intergenic	Intergenic	93764	NM_144773	128674		NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
183919	chr5	87395971	87396130	+	0	NA	intron (NM_001239, intron 7 of 8)	MER2|DNA|TcMar-Tigger	16854	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
227192	chr9	87969601	87970000	+	0	NA	exon (NM_001170639, exon 5 of 7)	exon (NM_001170639, exon 5 of 7)	4733	NM_001170639	23552		NM_012119	ENSG00000156345	CDK20	CCRK|CDCH|P42|PNQALRE	cyclin dependent kinase 20	protein-coding
120641	chr19	45070921	45071380	+	0	NA	TTS (NM_007056)	TTS (NM_007056)	-4477	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
22176	chr1	212287651	212287750	+	0	NA	intron (NM_006243, intron 1 of 12)	intron (NM_006243, intron 1 of 12)	2290	NM_006243	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
52825	chr12	57026401	57026600	+	0	NA	Intergenic	Intergenic	-9971	NR_135164	6866		NM_013251	ENSG00000166863	TAC3	HH10|LncZBTB39|NK3|NKB|NKNB|PRO1155|ZNEUROK1	tachykinin precursor 3	protein-coding
215488	chr7	158360771	158360930	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	171963	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
21572	chr1	206468071	206468650	+	0	NA	Intergenic	L2c|LINE|L2	-2116	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
169550	chr3	170182471	170182630	+	0	NA	promoter-TSS (NM_024947)	promoter-TSS (NM_024947)	-817	NM_024947	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
218403	chr8	47260401	47261400	+	0	NA	promoter-TSS (NM_001352935)	promoter-TSS (NM_001352935)	22	NM_001282916	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
38869	chr11	47345171	47345530	+	0	NA	intron (NM_000256, intron 12 of 33)	intron (NM_000256, intron 12 of 33)	7352	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
166753	chr3	122078251	122078350	+	0	NA	intron (NM_176892, intron 1 of 5)	intron (NM_176892, intron 1 of 5)	451	NM_176892	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
137738	chr2	197836701	197836980	+	0	NA	intron (NM_006226, intron 1 of 5)	AluJo|SINE|Alu	32247	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
194938	chr6	35205051	35205530	+	0	NA	Intergenic	Intergenic	-8666	NM_152753	222663		NM_152753	ENSG00000146197	SCUBE3	CEGF3|SSFSC2	signal peptide, CUB domain and EGF like domain containing 3	protein-coding
19483	chr1	175005571	175005730	+	0	NA	intron (NM_001007214, intron 2 of 5)	intron (NM_001007214, intron 2 of 5)	5703	NM_014412	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
144267	chr20	34561921	34562200	+	0	NA	intron (NM_080476, intron 11 of 11)	intron (NM_080476, intron 11 of 11)	3342	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
86896	chr16	68022471	68023730	+	0	NA	promoter-TSS (NM_001271762)	promoter-TSS (NM_001271762)	132	NM_018380	55794		NM_018380	ENSG00000182810	DDX28	MDDX28	DEAD-box helicase 28	protein-coding
227049	chr9	83973221	83973530	+	0	NA	exon (NM_001318188, exon 9 of 17)	exon (NM_001318188, exon 9 of 17)	-3518	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
27180	chr10	28549901	28550680	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	17172	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
110944	chr19	2839501	2839980	+	0	NA	Intergenic	L1MB3|LINE|L1	-1735	NM_001172775	148254		NM_152791	ENSG00000186300	ZNF555	-	zinc finger protein 555	protein-coding
167143	chr3	127822571	127823330	+	0	NA	promoter-TSS (NM_001256585)	promoter-TSS (NM_001256585)	-68	NM_001256585	11343		NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
70529	chr14	102498101	102498400	+	0	NA	exon (NM_014844, exon 20 of 20)	exon (NM_014844, exon 20 of 20)	11526	NM_152326	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
147763	chr20	62496351	62497080	+	0	NA	Intergenic	Intergenic	-20720	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
157493	chr22	45322601	45322800	+	0	NA	intron (NR_146323, intron 5 of 11)	intron (NR_146323, intron 5 of 11)	4257	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
67933	chr14	74762671	74764500	+	0	NA	exon (NM_019589, exon 1 of 21)	exon (NM_019589, exon 1 of 21)	269	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
117413	chr19	19627471	19629530	+	0	NA	promoter-TSS (NM_004720)	promoter-TSS (NM_004720)	-280	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
172776	chr4	2932801	2933500	+	0	NA	exon (NM_001120, exon 3 of 12)	exon (NM_001120, exon 3 of 12)	1087	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
213229	chr7	133482651	133483230	+	0	NA	intron (NM_021807, intron 9 of 17)	intron (NM_021807, intron 9 of 17)	192059	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
195859	chr6	41528671	41528980	+	0	NA	intron (NR_126415, intron 1 of 1)	MIRb|SINE|MIR	17418	NR_126417	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
206200	chr7	28203321	28204180	+	0	NA	intron (NR_034097, intron 2 of 3)	L1MB7|LINE|L1	-22955	NM_175061	221895		NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
185091	chr5	119073251	119073550	+	0	NA	intron (NM_001290321, intron 1 of 43)	intron (NM_001290321, intron 1 of 43)	2313	NM_001290322	1657		NM_005509	ENSG00000172869	DMXL1	-	Dmx like 1	protein-coding
146487	chr20	49823151	49824100	+	0	NA	intron (NR_048540, intron 3 of 11)	intron (NR_048540, intron 3 of 11)	10797	NR_048538	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
119684	chr19	40969901	40971130	+	0	NA	Intergenic	L1P2|LINE|L1	-20767	NM_000767	1555		NM_000767	ENSG00000197408	CYP2B6	CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450	cytochrome P450 family 2 subfamily B member 6	protein-coding
200872	chr6	138824701	138824980	+	0	NA	intron (NM_001077706, intron 4 of 21)	intron (NM_001077706, intron 4 of 21)	28729	NM_001077706	345930		NM_001077706	ENSG00000203734	ECT2L	ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5	epithelial cell transforming 2 like	protein-coding
134372	chr2	136242521	136243400	+	0	NA	Intergenic	Intergenic	-124811	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
230464	chr9	128205951	128206450	+	0	NA	intron (NM_001374269, intron 1 of 21)	intron (NM_001374269, intron 1 of 21)	-1978	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
7737	chr1	36145001	36145680	+	0	NA	intron (NM_001270895, intron 1 of 4)	intron (NM_001270895, intron 1 of 4)	4146	NM_014408	27095		NM_014408	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex subunit 3	protein-coding
95453	chr17	36166071	36166930	+	0	NA	exon (NM_001291462, exon 14 of 14).5	exon (NM_001291462, exon 14 of 14).5	10078	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
43672	chr11	85769901	85770100	+	0	NA	intron (NM_032943, intron 1 of 18)	LTR32|LTR|ERVL	-11931	NM_001162953	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
56534	chr12	116774101	116774300	+	0	NA	intron (NM_001382266, intron 6 of 10)	L1MB3|LINE|L1	35885	NM_032814	84900		NM_032814	ENSG00000135119	RNFT2	TMEM118	ring finger protein, transmembrane 2	protein-coding
105734	chr18	2732851	2733700	+	0	NA	intron (NM_015295, intron 25 of 47)	Tigger9b|DNA|TcMar-Tigger	77549	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
124649	chr2	2573521	2573980	+	0	NA	Intergenic	Intergenic	-242475	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
192457	chr6	24912171	24912430	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-1252	NM_014722	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
132538	chr2	106166421	106166880	+	0	NA	intron (NR_165308, intron 1 of 14)	intron (NR_165308, intron 1 of 14)	-6013	NM_001377509	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
83710	chr16	28497701	28497900	+	0	NA	exon (NM_018690, exon 2 of 4)	exon (NM_018690, exon 2 of 4)	3157	NM_018690	55911		NM_018690	ENSG00000184730	APOBR	APOB100R|APOB48R	apolipoprotein B receptor	protein-coding
64368	chr14	24125671	24126030	+	0	NA	TTS (NR_028100)	TTS (NR_028100)	-5616	NM_203402	161247		NM_203402	ENSG00000139914	FITM1	FIT1	fat storage inducing transmembrane protein 1	protein-coding
177988	chr4	139208221	139209030	+	0	NA	Intergenic	MER65A|LTR|ERV1	-31407	NM_001371336	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
93399	chr17	18323901	18324300	+	0	NA	3' UTR (NM_144775, exon 2 of 2)	3' UTR (NM_144775, exon 2 of 2)	8807	NM_144775	140775		NM_144775	ENSG00000176994	SMCR8	DENND8A	SMCR8-C9orf72 complex subunit	protein-coding
151305	chr21	45542201	45543950	+	0	NA	promoter-TSS (NM_001352510)	promoter-TSS (NM_001352510)	-635	NM_001205206	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
17788	chr1	159782521	159783380	+	0	NA	TTS (NM_001319659)	TTS (NM_001319659)	1988	NM_001319659	54935		NM_017823	ENSG00000158716	DUSP23	DUSP25|LDP-3|LDP3|MOSP|VHZ	dual specificity phosphatase 23	protein-coding
129981	chr2	74001821	74003400	+	0	NA	promoter-TSS (NM_001366022)	promoter-TSS (NM_001366022)	-82	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
119783	chr19	41314551	41315150	+	0	NA	intron (NM_001346100, intron 1 of 4)	AluJr4|SINE|Alu	4373	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
38671	chr11	46394351	46394450	+	0	NA	Intergenic	Intergenic	-2624	NM_000741	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
116580	chr19	18247451	18248150	+	0	NA	intron (NM_000923, intron 1 of 15)	intron (NM_000923, intron 1 of 15)	400	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
206081	chr7	27183651	27183750	+	0	NA	intron (NM_005523, intron 1 of 1)	intron (NM_005523, intron 1 of 1)	1532	NM_005523	3207		NM_005523	ENSG00000005073	HOXA11	HOX1|HOX1I|RUSAT1	homeobox A11	protein-coding
64677	chr14	32101901	32102730	+	0	NA	intron (NM_001173, intron 2 of 6)	intron (NM_001173, intron 2 of 6)	25011	NM_001173	394		NM_001173	ENSG00000100852	ARHGAP5	GFI2|RhoGAP5|p190-B|p190BRhoGAP	Rho GTPase activating protein 5	protein-coding
42697	chr11	72662401	72662800	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	6464	NM_001146209	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
139552	chr2	224920101	224920300	+	0	NA	intron (NM_001363762, intron 2 of 55)	AluJb|SINE|Alu	26849	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
182215	chr5	56847451	56847750	+	0	NA	intron (NM_005921, intron 1 of 19)	AluSx1|SINE|Alu	32051	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
33738	chr10	122383051	122383150	+	0	NA	intron (NM_001377254, intron 2 of 11)	L1MC4|LINE|L1	-2969	NM_001195608	59338		NM_021622	ENSG00000107679	PLEKHA1	TAPP1	pleckstrin homology domain containing A1	protein-coding
17123	chr1	156168471	156169030	+	0	NA	intron (NM_001370567, intron 9 of 13)	HAL1|LINE|L1	14202	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
48299	chr12	8986151	8986450	+	0	NA	intron (NR_137427, intron 1 of 2)	L1MC3|LINE|L1	-3246	NM_005810	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
225248	chr9	34254001	34254930	+	0	NA	exon (NM_194313, exon 13 of 13)	exon (NM_194313, exon 13 of 13)	74803	NM_194313	347240		NM_194313	ENSG00000186638	KIF24	C9orf48|bA571F15.4	kinesin family member 24	protein-coding
29420	chr10	70235051	70235350	+	0	NA	Intergenic	Intergenic	-1771	NM_021129	5464		NM_021129	ENSG00000180817	PPA1	HEL-S-66p|IOPPP|PP|PP1|SID6-8061	inorganic pyrophosphatase 1	protein-coding
239261	chrY	13435701	13437230	+	0	NA	intron (NM_001258265, intron 2 of 23)	HERV1_I-int|LTR|ERV1	-42712	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
147664	chr20	62288221	62288680	+	0	NA	intron (NM_001278649, intron 11 of 12)	intron (NM_001278649, intron 11 of 12)	-14446	NM_001281437	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
116669	chr19	18392301	18392700	+	0	NA	intron (NM_145256, intron 1 of 1)	AluSx|SINE|Alu	5122	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
33569	chr10	119443521	119444380	+	0	NA	intron (NM_005308, intron 12 of 15)	intron (NM_005308, intron 12 of 15)	65978	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
74686	chr15	62119451	62119630	+	0	NA	Intergenic	Intergenic	45745	NM_001007595	388125		NM_001007595	ENSG00000205502	C2CD4B	FAM148B|NLF2	C2 calcium dependent domain containing 4B	protein-coding
4927	chr1	23912101	23912300	+	0	NA	intron (NM_001841, intron 1 of 1)	MIR|SINE|MIR	1162	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
105633	chr18	832101	832380	+	0	NA	Intergenic	Intergenic	-19998	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
24824	chr10	322951	323350	+	0	NA	intron (NM_014974, intron 31 of 36)	CpG	143156	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
226557	chr9	72362401	72363250	+	0	NA	intron (NM_001102421, intron 1 of 5)	intron (NM_001102421, intron 1 of 5)	1731	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
227076	chr9	84751851	84752150	+	0	NA	exon (NM_001018064, exon 12 of 18)	exon (NM_001018064, exon 12 of 18)	46099	NM_001369552	4915		NM_006180	ENSG00000148053	NTRK2	DEE58|EIEE58|GP145-TrkB|OBHD|TRKB|trk-B	neurotrophic receptor tyrosine kinase 2	protein-coding
52599	chr12	56206351	56206900	+	0	NA	non-coding (NR_040053, exon 9 of 9)	non-coding (NR_040053, exon 9 of 9)	15076	NM_001242826	10193		NM_005785	ENSG00000181852	RNF41	FLRF|NRDP1|SBBI03	ring finger protein 41	protein-coding
144139	chr20	34021321	34021580	+	0	NA	intron (NM_016732, intron 1 of 9)	MSTD|LTR|ERVL-MaLR	-27083	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
235186	chrX	41333901	41334500	+	0	NA	promoter-TSS (NM_001363819)	promoter-TSS (NM_001363819)	34	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
20735	chr1	200904651	200904750	+	0	NA	intron (NM_018265, intron 5 of 9)	intron (NM_018265, intron 5 of 9)	9800	NM_001367290	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
135680	chr2	168626201	168626400	+	0	NA	intron (NM_203463, intron 3 of 9)	intron (NM_203463, intron 3 of 9)	43357	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
224624	chr9	20528301	20528750	+	0	NA	intron (NM_001286691, intron 2 of 10)	MLT1D|LTR|ERVL-MaLR	-26183	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
180219	chr5	1520721	1521180	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	3010	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
96854	chr17	42014901	42016000	+	0	NA	intron (NM_003315, intron 1 of 13)	intron (NM_003315, intron 1 of 13)	1715	NM_001144766	7266		NM_003315	ENSG00000168259	DNAJC7	DJ11|DJC7|TPR2|TTC2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding
64924	chr14	35645351	35645450	+	0	NA	intron (NM_014990, intron 30 of 40)	L1PA5|LINE|L1	111236	NM_032594	84684		NM_032594	ENSG00000168348	INSM2	IA-6|IA6|mlt1	INSM transcriptional repressor 2	protein-coding
131894	chr2	98748351	98749050	+	0	NA	Intergenic	AluJo|SINE|Alu	-17568	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
70401	chr14	101969271	101969850	+	0	NA	intron (NM_001376, intron 1 of 77)	intron (NM_001376, intron 1 of 77)	4987	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
208893	chr7	73845821	73846280	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-3534	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
70895	chr14	103909901	103910850	+	0	NA	Intergenic	Intergenic	11154	NM_001127393	9556		NM_004894	ENSG00000156411	ATP5MJ	6.8PL|ATP5MPL|C14orf2|MLQ|MP68|PLPM	ATP synthase membrane subunit j	protein-coding
58908	chr13	19672771	19673130	+	0	NA	3' UTR (NM_017520, exon 14 of 14)	3' UTR (NM_017520, exon 14 of 14)	39291	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
190758	chr6	455151	455650	+	0	NA	Intergenic	MER6|DNA|TcMar-Tigger	63648	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
38520	chr11	45893671	45894030	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	8199	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
54889	chr12	95856201	95856400	+	0	NA	intron (NR_135014, intron 1 of 2)	AluSx|SINE|Alu	2539	NR_135015	105369921		NR_135014	ENSG00000258343	SNRPF-DT	-	SNRPF divergent transcript	ncRNA
26163	chr10	14381701	14382310	+	0	NA	Intergenic	L2a|LINE|L2	1272	NR_036181	100422843		NR_036181	ENSG00000266321	MIR4293	-	microRNA 4293	ncRNA
177549	chr4	119124571	119124730	+	0	NA	Intergenic	Intergenic	-11182	NM_016599	51778		NM_016599	ENSG00000172399	MYOZ2	C4orf5|CMH16|CS-1|FATZ-2	myozenin 2	protein-coding
31659	chr10	97415751	97416080	+	0	NA	Intergenic	L1MB7|LINE|L1	10142	NR_157582	644215		NR_157582		LOC644215	-	uncharacterized LOC644215	ncRNA
35651	chr11	1853701	1854530	+	0	NA	intron (NM_002339, intron 1 of 10)	intron (NM_002339, intron 1 of 10)	1031	NM_002339	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
135569	chr2	165788251	165788750	+	0	NA	intron (NM_004482, intron 1 of 10)	(GT)n|Simple_repeat|Simple_repeat	5747	NM_004482	2591		NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HFTC1|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
205567	chr7	21254051	21254600	+	0	NA	Intergenic	Intergenic	-173758	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
234973	chrX	39336251	39336350	+	0	NA	Intergenic	Intergenic	-8938	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
113244	chr19	8494301	8495250	+	0	NA	intron (NM_032152, intron 4 of 9)	AluSx1|SINE|Alu	7865	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
214921	chr7	151516101	151516930	+	0	NA	intron (NM_005614, intron 1 of 7)	AluSg4|SINE|Alu	3380	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
43225	chr11	75442001	75442400	+	0	NA	intron (NM_030792, intron 12 of 16)	MIRc|SINE|MIR	10127	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
70860	chr14	103711171	103711400	+	0	NA	intron (NM_001371231, intron 3 of 9)	intron (NM_001371231, intron 3 of 9)	4166	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
2976	chr1	11978251	11978550	+	0	NA	Intergenic	Intergenic	-1781	NM_001127660	9927		NM_014874	ENSG00000116688	MFN2	CMT2A|CMT2A2|CMT2A2A|CMT2A2B|CPRP1|HMSN6A|HSG|MARF|MSL	mitofusin 2	protein-coding
162841	chr3	49281201	49281750	+	0	NA	intron (NM_199443, intron 18 of 20)	intron (NM_199443, intron 18 of 20)	-4243	NM_198562	375341		NM_198562	ENSG00000188315	C3orf62	MAPS	chromosome 3 open reading frame 62	protein-coding
137390	chr2	196216921	196217180	+	0	NA	exon (NM_020760, exon 27 of 29)	exon (NM_020760, exon 27 of 29)	-42974	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
233826	chrX	1486171	1487630	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-33138	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
75916	chr15	70091771	70092630	+	0	NA	intron (NM_001282982, intron 2 of 17)	intron (NM_001282982, intron 2 of 17)	2589	NM_001282982	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
49006	chr12	14219221	14219930	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	-146057	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
14134	chr1	121003871	121004230	+	0	NA	intron (NR_135813, intron 2 of 2)	intron (NR_135813, intron 2 of 2)	40402	NR_160532	105369199		NR_160532		LOC105369199	-	NBPF member 6 pseudogene	pseudo
98473	chr17	47187351	47187650	+	0	NA	intron (NR_148340, intron 1 of 16)	AluSx1|SINE|Alu	1795	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
224723	chr9	21565101	21565500	+	0	NA	Intergenic	Intergenic	-5502	NR_152878	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
186808	chr5	139381221	139381700	+	0	NA	intron (NM_152685, intron 3 of 14)	AluSp|SINE|Alu	1837	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
18690	chr1	167426171	167426330	+	0	NA	non-coding (NR_037163, exon 17 of 17)	non-coding (NR_037163, exon 17 of 17)	92279	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
60024	chr13	32541151	32541480	+	0	NA	Intergenic	L1MC3|LINE|L1	-2430	NM_033111	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
5301	chr1	25213921	25214180	+	0	NA	Intergenic	AluSx|SINE|Alu	18452	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
213047	chr7	131052751	131053330	+	0	NA	intron (NR_109852, intron 2 of 5)	AluSx1|SINE|Alu	53990	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
98325	chr17	46261971	46262130	+	0	NA	Intergenic	AluSz|SINE|Alu	-33081	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
27833	chr10	38357651	38357750	+	0	NA	intron (NR_003086, intron 1 of 7)	intron (NR_003086, intron 1 of 7)	1320	NR_003086	158160		NM_182829	ENSG00000290439	HSD17B7P2	HSD17B7|Hsd17b_2|bA291L22.1	hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2	pseudo
80786	chr16	3234501	3235940	+	0	NA	promoter-TSS (NM_003454)	promoter-TSS (NM_003454)	-62	NM_198087	7752		NM_003454	ENSG00000010539	ZNF200	-	zinc finger protein 200	protein-coding
199862	chr6	127793501	127793700	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	61588	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
18665	chr1	167109051	167109350	+	0	NA	intron (NM_001080426, intron 2 of 5)	L1PBa|LINE|L1	15125	NM_001080426	92235		NM_001080426	ENSG00000198842	STYXL2	DUSP27	serine/threonine/tyrosine interacting like 2	protein-coding
81088	chr16	4349271	4350030	+	0	NA	intron (NM_001201479, intron 27 of 30)	AluJo|SINE|Alu	1671	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
205710	chr7	23459951	23460250	+	0	NA	intron (NM_006547, intron 2 of 14)	AluJo|SINE|Alu	10391	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
73258	chr15	41825101	41825300	+	0	NA	intron (NM_014994, intron 30 of 30)	intron (NM_014994, intron 30 of 30)	-2885	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
77793	chr15	87643071	87643380	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	66296	NR_026869	145978		NM_152454	ENSG00000259527	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
101595	chr17	68099401	68100230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1740	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
123275	chr19	53520621	53521700	+	0	NA	5' UTR (NM_001317120, exon 1 of 7)	5' UTR (NM_001317120, exon 1 of 7)	146	NM_001317120	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
153580	chr22	26674511	26675450	+	0	NA	non-coding (NR_003491, exon 5 of 5)	non-coding (NR_003491, exon 5 of 5)	2137	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
38379	chr11	44721631	44721750	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-5272	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
20103	chr1	187092071	187092500	+	0	NA	promoter-TSS (NR_126347)	promoter-TSS (NR_126347)	-557	NR_126347	104169671		NR_126347	ENSG00000230426	LINC01036	-	long intergenic non-protein coding RNA 1036	ncRNA
144248	chr20	34514901	34515900	+	0	NA	promoter-TSS (NM_001382365)	promoter-TSS (NM_001382365)	-202	NR_168136	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
165339	chr3	88106051	88106150	+	0	NA	intron (NM_001350134, intron 2 of 8)	MLT1A1|LTR|ERVL-MaLR	43766	NM_001195308	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
211076	chr7	102477251	102477550	+	0	NA	intron (NM_006234, intron 1 of 3)	MER5A|DNA|hAT-Charlie	1522	NM_001371100	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
175737	chr4	77710221	77710750	+	0	NA	Intergenic	Intergenic	104665	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
16612	chr1	155073171	155073330	+	0	NA	Intergenic	Intergenic	-5587	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
52463	chr12	55953501	55953950	+	0	NA	TTS (NM_001320122)	TTS (NM_001320122)	12317	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
215153	chr7	155483501	155483700	+	0	NA	Intergenic	Intergenic	25471	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
82023	chr16	12009351	12009850	+	0	NA	intron (NM_032167, intron 3 of 20)	intron (NM_032167, intron 3 of 20)	32866	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
31896	chr10	100340851	100341350	+	0	NA	Intergenic	Intergenic	-6133	NM_005063	6319		NM_005063	ENSG00000099194	SCD	FADS5|MSTP008|SCD1|SCDOS|hSCD1	stearoyl-CoA desaturase	protein-coding
176281	chr4	87100401	87100800	+	0	NA	intron (NM_001313959, intron 7 of 19)	L2a|LINE|L2	93599	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
76800	chr15	77030201	77030730	+	0	NA	intron (NR_135552, intron 8 of 11)	intron (NR_135552, intron 8 of 11)	35339	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
170469	chr3	185929351	185930150	+	0	NA	intron (NM_004593, intron 1 of 8)	intron (NM_004593, intron 1 of 8)	8264	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
153669	chr22	28941021	28941100	+	0	NA	intron (NM_032173, intron 1 of 8)	intron (NM_032173, intron 1 of 8)	23671	NM_032173	84133		NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
87220	chr16	69529671	69529830	+	0	NA	Intergenic	Intergenic	36118	NR_031719	100302119		NR_031719	ENSG00000223109	MIR1538	MIRN1538|hsa-mir-1538	microRNA 1538	ncRNA
198208	chr6	97294501	97294700	+	0	NA	Intergenic	L1MEf|LINE|L1	-10986	NR_110757	101927314		NR_110757	ENSG00000271860	LOC101927314	-	uncharacterized LOC101927314	ncRNA
30330	chr10	77041471	77041940	+	0	NA	intron (NM_001322836, intron 14 of 27)	intron (NM_001322836, intron 14 of 27)	-99126	NR_120654	101929310		NR_120654	ENSG00000225497	KCNMA1-AS2	-	KCNMA1 antisense RNA 2	ncRNA
159774	chr3	16306301	16307530	+	0	NA	TTS (NM_001330670)	TTS (NM_001330670)	41703	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
195283	chr6	36511201	36511400	+	0	NA	intron (NM_007271, intron 7 of 13)	intron (NM_007271, intron 7 of 13)	36179	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
207527	chr7	44811651	44812000	+	0	NA	Intergenic	AluSz|SINE|Alu	15144	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
34182	chr10	128127671	128127830	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-1327	NM_001145966	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
3939	chr1	18110951	18111250	+	0	NA	intron (NM_032880, intron 1 of 9)	CpG	3302	NM_032880	84966		NM_032880	ENSG00000117154	IGSF21	-	immunoglobin superfamily member 21	protein-coding
137529	chr2	197207621	197208300	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	9969	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
76461	chr15	74844011	74844380	+	0	NA	3' UTR (NM_005697, exon 9 of 9)	3' UTR (NM_005697, exon 9 of 9)	-1039	NM_001284364	25989		NM_001099436	ENSG00000140474	ULK3	-	unc-51 like kinase 3	protein-coding
195912	chr6	41736751	41737800	+	0	NA	intron (NM_002630, intron 8 of 8)	intron (NM_002630, intron 8 of 8)	-1052	NM_001167827	7942		NM_007162	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
143581	chr20	31674831	31675400	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	37203	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
176000	chr4	82044071	82044530	+	0	NA	Intergenic	CpG	329691	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
88745	chr16	86509171	86509950	+	0	NA	promoter-TSS (NR_033925)	promoter-TSS (NR_033925)	-700	NR_036444	400550		NR_033925	ENSG00000268388	FENDRR	FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21	FOXF1 adjacent non-coding developmental regulatory RNA	ncRNA
80318	chr16	2423101	2423880	+	0	NA	intron (NR_003574, intron 14 of 16)	MIR|SINE|MIR	-5957	NM_001761	899		NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1|FTDALS5	cyclin F	protein-coding
222168	chr8	132875401	132875900	+	0	NA	intron (NM_003235, intron 5 of 47)	intron (NM_003235, intron 5 of 47)	8692	NM_003235	7038		NM_003235	ENSG00000042832	TG	AITD3|TGN	thyroglobulin	protein-coding
188987	chr5	163565971	163566930	+	0	NA	Intergenic	Intergenic	60831	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
130892	chr2	87428401	87429150	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-26652	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
63119	chr13	113362401	113363130	+	0	NA	TTS (NR_046541)	TTS (NR_046541)	1365	NM_024719	79774		NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
90535	chr17	1485501	1486400	+	0	NA	promoter-TSS (NM_001080950)	promoter-TSS (NM_001080950)	-190	NM_001080950	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
223451	chr8	143982471	143984230	+	0	NA	exon (NM_032789, exon 8 of 11)	exon (NM_032789, exon 8 of 11)	3110	NM_032789	84875		NM_032789	ENSG00000178685	PARP10	ARTD10	poly(ADP-ribose) polymerase family member 10	protein-coding
77438	chr15	84197201	84197400	+	0	NA	non-coding (NR_033738, exon 4 of 8)	non-coding (NR_033738, exon 4 of 8)	5452	NR_033738	440300		NR_033738		LOC440300	-	chondroitin sulfate proteoglycan 4 pseudogene	pseudo
213404	chr7	137606071	137606230	+	0	NA	intron (NM_001321708, intron 10 of 32)	intron (NM_001321708, intron 10 of 32)	240182	NM_001321709	9162		NM_004717	ENSG00000157680	DGKI	DGK-IOTA	diacylglycerol kinase iota	protein-coding
8225	chr1	39686201	39686600	+	0	NA	intron (NM_016257, intron 1 of 3)	intron (NM_016257, intron 1 of 3)	5033	NM_016257	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
162396	chr3	48186551	48186850	+	0	NA	intron (NM_001789, intron 2 of 14)	intron (NM_001789, intron 2 of 14)	1717	NM_001789	993		NM_001789	ENSG00000164045	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
181917	chr5	54756401	54756800	+	0	NA	Intergenic	Intergenic	-12342	NR_104658	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
158445	chr22	50610051	50611600	+	0	NA	3' UTR (NM_012324, exon 12 of 12)	3' UTR (NM_012324, exon 12 of 12)	10032	NM_012324	23542		NM_012324	ENSG00000008735	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
32268	chr10	102066601	102068300	+	0	NA	exon (NM_024747, exon 1 of 1)	exon (NM_024747, exon 1 of 1)	2101	NM_024747	79803		NM_024747	ENSG00000166189	HPS6	BLOC2S3	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding
151648	chr22	16774771	16775130	+	0	NA	Intergenic	L1M3f|LINE|L1	-26512	NR_134584	101929350		NR_134584	ENSG00000235343	LINC01665	-	long intergenic non-protein coding RNA 1665	ncRNA
47927	chr12	6789151	6789650	+	0	NA	promoter-TSS (NM_000616)	promoter-TSS (NM_000616)	-128	NM_000616	920		NM_000616	ENSG00000010610	CD4	CD4mut|IMD79|Leu-3|OKT4D|T4	CD4 molecule	protein-coding
9956	chr1	54767691	54768300	+	0	NA	Intergenic	Intergenic	-3472	NM_152268	25973		NM_152268	ENSG00000162396	PARS2	DEE75|EIEE75|MT-PRORS|proRS	prolyl-tRNA synthetase 2, mitochondrial	protein-coding
192622	chr6	26097271	26097730	+	0	NA	3' UTR (NM_139011, exon 3 of 3)	3' UTR (NM_139011, exon 3 of 3)	-6433	NM_003542	8364		NM_003542	ENSG00000197061	H4C3	H4-16|H4/g|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C4|H4C5|H4C6|H4C8|H4C9|H4FG|HIST1H4C|TEBIVANED1|TEVANED1|dJ221C16.1	H4 clustered histone 3	protein-coding
204392	chr7	3036201	3036600	+	0	NA	intron (NM_001324281, intron 1 of 25)	L1ME3|LINE|L1	7467	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
159673	chr3	15405421	15405880	+	0	NA	Intergenic	Intergenic	21894	NM_152396	131965		NM_152396	ENSG00000206562	METTL6	hMETTL6	methyltransferase 6, tRNA N3-cytidine	protein-coding
80582	chr16	2876251	2876580	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6780	NM_001142500	114984		NM_138439	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
169886	chr3	177523871	177524030	+	0	NA	intron (NR_047568, intron 1 of 3)	A-rich|Low_complexity|Low_complexity	82029	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
43909	chr11	89062921	89063180	+	0	NA	intron (NM_001143831, intron 1 of 9)	intron (NM_001143831, intron 1 of 9)	609	NM_000842	2915		NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
1597	chr1	3623351	3623680	+	0	NA	Intergenic	LTR40c|LTR|ERVL	-1500	NM_182752	127262		NM_182752	ENSG00000158109	TPRG1L	FAM79A|SVAP30|TPRGL|h-mover|mover	tumor protein p63 regulated 1 like	protein-coding
93691	chr17	19371751	19372450	+	0	NA	intron (NM_001368769, intron 1 of 6)	intron (NM_001368769, intron 1 of 6)	-5621	NM_139033	5598		NM_002749	ENSG00000166484	MAPK7	BMK1|ERK4|ERK5|PRKM7	mitogen-activated protein kinase 7	protein-coding
169507	chr3	169969571	169970100	+	0	NA	intron (NM_003262, intron 1 of 7)	intron (NM_003262, intron 1 of 7)	3028	NM_003262	7095		NM_003262	ENSG00000008952	SEC62	Dtrp1|HTP1|TLOC1|TP-1	SEC62 homolog, preprotein translocation factor	protein-coding
92636	chr17	10123821	10124080	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	74656	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
53298	chr12	64459021	64459900	+	0	NA	intron (NM_013254, intron 2 of 20)	intron (NM_013254, intron 2 of 20)	7340	NM_013254	29110		NM_013254	ENSG00000183735	TBK1	FTDALS4|IIAE8|NAK|T2K	TANK binding kinase 1	protein-coding
222196	chr8	133045051	133045380	+	0	NA	intron (NM_001045556, intron 6 of 8)	intron (NM_001045556, intron 6 of 8)	1366	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
78137	chr15	90393951	90394430	+	0	NA	intron (NM_003870, intron 2 of 37)	(T)n|Simple_repeat|Simple_repeat	5948	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
59810	chr13	30394351	30395100	+	0	NA	Intergenic	Intergenic	-20811	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
172572	chr4	2444051	2444150	+	0	NA	intron (NM_001193282, intron 5 of 15)	intron (NM_001193282, intron 5 of 15)	-25006	NM_002938	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
2018	chr1	6996471	6996630	+	0	NA	intron (NM_001349608, intron 2 of 21)	L1ME2z|LINE|L1	211096	NM_001349609	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
122690	chr19	49892051	49892350	+	0	NA	intron (NM_001385639, intron 5 of 7)	AluSx1|SINE|Alu	4025	NR_039905	100616314		NR_039905	ENSG00000284394	MIR4750	mir-4750	microRNA 4750	ncRNA
57753	chr12	122971721	122972550	+	0	NA	Intergenic	AluYc|SINE|Alu	-2591	NM_001304836	79676		NM_024623	ENSG00000111325	OGFOD2	-	2-oxoglutarate and iron dependent oxygenase domain containing 2	protein-coding
142914	chr20	18139871	18140030	+	0	NA	intron (NM_020536, intron 1 of 10)	intron (NM_020536, intron 1 of 10)	2087	NM_001164811	100303755		NM_001164811	ENSG00000232838	PET117	CSRP2BP|MC4DN19	PET117 cytochrome c oxidase chaperone	protein-coding
237544	chrX	120468551	120469580	+	0	NA	intron (NM_002294, intron 1 of 8)	intron (NM_002294, intron 1 of 8)	231	NM_002294	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
162368	chr3	47850971	47851800	+	0	NA	3' UTR (NM_002375, exon 19 of 19)	3' UTR (NM_002375, exon 19 of 19)	1830	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
1895	chr1	6446951	6448430	+	0	NA	intron (NM_031475, intron 7 of 12)	CpG	-17794	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
121413	chr19	46980521	46981280	+	0	NA	intron (NM_004491, intron 3 of 6)	intron (NM_004491, intron 3 of 6)	-38937	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
204143	chr7	2377671	2378500	+	0	NA	intron (NM_001362791, intron 15 of 18)	intron (NM_001362791, intron 15 of 18)	23258	NM_001362791	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
186670	chr5	138646551	138646850	+	0	NA	Intergenic	Intergenic	-71299	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
174338	chr4	38685271	38685430	+	0	NA	intron (NM_016531, intron 2 of 5)	intron (NM_016531, intron 2 of 5)	-20722	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
145723	chr20	45045901	45046880	+	0	NA	intron (NM_006282, intron 10 of 10)	AluJr|SINE|Alu	54737	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
17316	chr1	156461571	156462700	+	0	NA	Intergenic	Intergenic	28552	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
14840	chr1	146367151	146367980	+	0	NA	Intergenic	Intergenic	-9242	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
47715	chr12	6454901	6455100	+	0	NA	intron (NR_147127, intron 3 of 8)	intron (NR_147127, intron 3 of 8)	2958	NR_147127	55080		NM_018009	ENSG00000139192	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein like	protein-coding
54414	chr12	90253801	90254050	+	0	NA	Intergenic	Intergenic	-39393	NR_135018	105369893		NR_135018	ENSG00000258183	LINC02392	-	long intergenic non-protein coding RNA 2392	ncRNA
21256	chr1	204383721	204384200	+	0	NA	Intergenic	L2a|LINE|L2	-14241	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
231575	chr9	131514201	131514400	+	0	NA	intron (NR_148392, intron 12 of 20)	L2a|LINE|L2	11382	NM_001353196	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
47674	chr12	6341381	6342500	+	0	NA	non-coding (NR_144351, exon 1 of 9)	non-coding (NR_144351, exon 1 of 9)	136	NM_001346091	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
19444	chr1	174786851	174787550	+	0	NA	intron (NM_001366447, intron 18 of 20)	AluSx|SINE|Alu	-12538	NM_001330989	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
184354	chr5	96985871	96986230	+	0	NA	intron (NM_175920, intron 3 of 17)	intron (NM_175920, intron 3 of 17)	27617	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
125408	chr2	11719501	11719730	+	0	NA	intron (NM_001261428, intron 2 of 21)	intron (NM_001261428, intron 2 of 21)	-4700	NM_001261427	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
213172	chr7	132433171	132434050	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	142860	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
128483	chr2	58049251	58049550	+	0	NA	intron (NM_006296, intron 2 of 12)	MER105|DNA|hAT-Charlie	2594	NM_006296	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
141855	chr20	584451	584650	+	0	NA	Intergenic	(CAGAGG)n|Simple_repeat|Simple_repeat	25716	NM_004609	6939		NM_004609	ENSG00000125878	TCF15	EC2|PARAXIS|bHLHa40	transcription factor 15	protein-coding
40813	chr11	64920071	64920680	+	0	NA	Intergenic	Intergenic	-3166	NM_001367971	23130		NM_015104	ENSG00000110046	ATG2A	BLTP4A	autophagy related 2A	protein-coding
189574	chr5	175489271	175489630	+	0	NA	intron (NM_001322981, intron 1 of 9)	intron (NM_001322981, intron 1 of 9)	10890	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
145624	chr20	44684951	44685450	+	0	NA	Intergenic	MIRb|SINE|MIR	-13461	NR_034104	79015		NM_024049	ENSG00000283440	LINC01260	-	long intergenic non-protein coding RNA 1260	ncRNA
22632	chr1	223710071	223710530	+	0	NA	intron (NM_001146068, intron 1 of 20)	AluSx|SINE|Alu	-2239	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
118821	chr19	38556821	38558150	+	0	NA	intron (NM_000540, intron 89 of 105)	L2a|LINE|L2	-38862	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
151960	chr22	19132451	19132550	+	0	NA	non-coding (NR_134304, exon 10 of 10)	non-coding (NR_134304, exon 10 of 10)	1192	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
139756	chr2	229919071	229919230	+	0	NA	intron (NM_001348325, intron 1 of 42)	AluSx|SINE|Alu	2529	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
165033	chr3	71416601	71417700	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-112379	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
138873	chr2	216885921	216886000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	15188	NR_130782	101928327		NR_130782		TESHL	LINC01921	testicular germ cell expressed HSF2 interacting lncRNA	ncRNA
91434	chr17	4741671	4742100	+	0	NA	intron (NM_032265, intron 3 of 12)	intron (NM_032265, intron 3 of 12)	1870	NM_032265	84225		NM_032265	ENSG00000141497	ZMYND15	SPGF14	zinc finger MYND-type containing 15	protein-coding
164435	chr3	59313551	59313650	+	0	NA	Intergenic	Intergenic	-263568	NM_001351534	200844		NM_198463	ENSG00000163689	CFAP20DC	C3orf67	CFAP20 domain containing	protein-coding
225139	chr9	33676401	33677340	+	0	NA	promoter-TSS (NR_103745)	promoter-TSS (NR_103745)	-398	NR_103745	101243555		NR_103745	ENSG00000281128	PTENP1-AS	PTENP1as|PTENpg1-asRNA	PTENP1 antisense RNA	ncRNA
201874	chr6	150685951	150686150	+	0	NA	intron (NM_001329800, intron 1 of 15)	intron (NM_001329800, intron 1 of 15)	2403	NM_001329800	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
172465	chr4	2041741	2043150	+	0	NA	exon (NM_001168243, exon 2 of 4)	exon (NM_001168243, exon 2 of 4)	450	NM_001141936	401115		NM_001141936	ENSG00000243449	NICOL1	C4orf48|CHR4_55|NICOL	NELL2 interacting cell ontogeny regulator 1	protein-coding
89166	chr16	88539651	88540280	+	0	NA	Intergenic	Intergenic	-8912	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
73035	chr15	40843771	40845130	+	0	NA	promoter-TSS (NR_146466)	promoter-TSS (NR_146466)	-27	NM_001032367	6692		NM_003710	ENSG00000166145	SPINT1	HAI|HAI1|MANSC2	serine peptidase inhibitor, Kunitz type 1	protein-coding
91252	chr17	3962551	3962650	+	0	NA	intron (NM_174953, intron 1 of 22)	intron (NM_174953, intron 1 of 22)	1837	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
104993	chr17	82013321	82013750	+	0	NA	intron (NR_045351, intron 11 of 14)	intron (NR_045351, intron 11 of 14)	9343	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
231462	chr9	131283971	131284280	+	0	NA	Intergenic	MIRb|SINE|MIR	-5598	NM_032728	84814		NM_032728	ENSG00000160539	PLPP7	C9orf67|NET39|PPAPDC3	phospholipid phosphatase 7 (inactive)	protein-coding
35359	chr11	1244371	1245130	+	0	NA	exon (NM_002458, exon 31 of 49)	exon (NM_002458, exon 31 of 49)	4926	NR_157183	112577518		NR_157183	ENSG00000255177	MUC5B-AS1	-	MUC5B antisense RNA 1	ncRNA
31351	chr10	93376401	93376830	+	0	NA	intron (NM_133337, intron 21 of 52)	intron (NM_133337, intron 21 of 52)	105719	NM_133337	26509		NM_013451	ENSG00000138119	MYOF	FER1L3|HAE7	myoferlin	protein-coding
39773	chr11	61915301	61915500	+	0	NA	intron (NM_001271686, intron 1 of 8)	intron (NM_001271686, intron 1 of 8)	2166	NM_013401	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
141961	chr20	1309051	1309550	+	0	NA	TTS (NM_015685)	TTS (NM_015685)	4373	NM_015685	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
50855	chr12	49133671	49133830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2355	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
183780	chr5	81852801	81853000	+	0	NA	Intergenic	Intergenic	-101647	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
122946	chr19	50718001	50718200	+	0	NA	intron (NM_016148, intron 1 of 23)	intron (NM_016148, intron 1 of 23)	1702	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
207370	chr7	44107801	44108580	+	0	NA	intron (NM_001129, intron 6 of 20)	intron (NM_001129, intron 6 of 20)	-2659	NR_039792	100616346		NR_039792	ENSG00000284412	MIR4649	mir-4649	microRNA 4649	ncRNA
106440	chr18	13613871	13614250	+	0	NA	intron (NM_001003674, intron 1 of 3)	intron (NM_001003674, intron 1 of 3)	2296	NM_001276249	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
33493	chr10	119114271	119114730	+	0	NA	intron (NM_001303113, intron 3 of 7)	intron (NM_001303113, intron 3 of 7)	10387	NM_001303111	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
72559	chr15	34494301	34494500	+	0	NA	Intergenic	CpG	33971	NR_036050	100302160		NR_036050	ENSG00000221649	MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
156244	chr22	40397271	40398200	+	0	NA	intron (NM_001350047, intron 1 of 20)	L2a|LINE|L2	27141	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
3617	chr1	16366861	16368480	+	0	NA	intron (NR_073500, intron 1 of 1)	CpG	428	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
207845	chr7	50348721	50349180	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	29902	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
41480	chr11	66217621	66218280	+	0	NA	intron (NM_018026, intron 7 of 23)	intron (NM_018026, intron 7 of 23)	-39344	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
36088	chr11	3011421	3011680	+	0	NA	intron (NR_165428, intron 18 of 22)	AluY|SINE|Alu	-17844	NR_046580	100852407		NR_046580	ENSG00000247473	CARS1-AS1	CARS-AS1	CARS1 antisense RNA 1	ncRNA
43136	chr11	75275401	75277150	+	0	NA	intron (NM_020251, intron 10 of 14)	intron (NM_020251, intron 10 of 14)	35501	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
118243	chr19	35217971	35218130	+	0	NA	Intergenic	AluY|SINE|Alu	10675	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
101826	chr17	73595521	73595980	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	48695	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
13061	chr1	111468251	111468750	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-5484	NM_174896	128346		NM_174896	ENSG00000143110	C1orf162	-	chromosome 1 open reading frame 162	protein-coding
226500	chr9	71779021	71779780	+	0	NA	Intergenic	AluSz|SINE|Alu	-10887	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
106054	chr18	9085301	9085700	+	0	NA	Intergenic	Intergenic	-17199	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
145170	chr20	38857851	38858250	+	0	NA	intron (NM_001172735, intron 2 of 9)	MLT1A|LTR|ERVL-MaLR	52353	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
229703	chr9	124769971	124770500	+	0	NA	intron (NM_001278546, intron 1 of 9)	CpG	1076	NM_033334	2649		NM_001489	ENSG00000148200	NR6A1	CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR	nuclear receptor subfamily 6 group A member 1	protein-coding
232643	chr9	136472721	136473350	+	0	NA	intron (NM_014866, intron 3 of 31)	intron (NM_014866, intron 3 of 31)	-9975	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
143306	chr20	25318851	25319350	+	0	NA	intron (NM_001042472, intron 4 of 12)	intron (NM_001042472, intron 4 of 12)	71015	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
35157	chr11	749921	750380	+	0	NA	intron (NM_006755, intron 1 of 7)	intron (NM_006755, intron 1 of 7)	2686	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
118327	chr19	35555151	35555650	+	0	NA	intron (NM_000704, intron 14 of 21)	intron (NM_000704, intron 14 of 21)	8258	NM_000704	495		NM_000704	ENSG00000105675	ATP4A	ATP6A	ATPase H+/K+ transporting subunit alpha	protein-coding
37478	chr11	18380371	18380530	+	0	NA	Intergenic	AluSx|SINE|Alu	-7337	NR_036116	100423016		NR_036116	ENSG00000264603	MIR3159	-	microRNA 3159	ncRNA
130725	chr2	86762571	86763180	+	0	NA	intron (NM_022780, intron 4 of 8)	AluJb|SINE|Alu	28038	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
203894	chr7	1489371	1489730	+	0	NA	intron (NM_001080453, intron 17 of 47)	intron (NM_001080453, intron 17 of 47)	14839	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
155171	chr22	37726351	37726830	+	0	NA	intron (NM_001039141, intron 7 of 23)	MIRb|SINE|MIR	19354	NR_160697	102724378		NR_160696		LOC102724378	-	uncharacterized LOC102724378	ncRNA
213068	chr7	131076851	131077250	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	29980	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
24978	chr10	3066101	3066500	+	0	NA	non-coding (NR_160682, exon 2 of 2)	non-coding (NR_160682, exon 2 of 2)	633	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
39253	chr11	57715101	57715300	+	0	NA	intron (NR_144933, intron 1 of 6)	AluSq2|SINE|Alu	2607	NM_015959	51075		NM_015959	ENSG00000213593	TMX2	CGI-31|NEDMCMS|PDIA12|PIG26|TXNDC14	thioredoxin related transmembrane protein 2	protein-coding
22415	chr1	220045171	220045700	+	0	NA	intron (NM_004446, intron 1 of 31)	AluJb|SINE|Alu	1070	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
91772	chr17	6938701	6939100	+	0	NA	Intergenic	HERV4_I-int|LTR|ERV1	45123	NR_120453	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
111942	chr19	4793551	4794050	+	0	NA	exon (NM_018708, exon 1 of 1)	exon (NM_018708, exon 1 of 1)	2066	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
86659	chr16	67467071	67468130	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	13557	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
228395	chr9	99134651	99135100	+	0	NA	intron (NM_004612, intron 3 of 8)	intron (NM_004612, intron 3 of 8)	29762	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233595	chrX	321801	324200	+	0	NA	Intergenic	AluYi6|SINE|Alu	3855	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
59458	chr13	26007771	26007930	+	0	NA	intron (NM_016529, intron 35 of 36)	L1MEd|LINE|L1	44166	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
219651	chr8	80432271	80432800	+	0	NA	Intergenic	MER51B|LTR|ERV1	-53058	NM_001277145	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
232744	chr9	136654801	136655000	+	0	NA	intron (NR_135132, intron 1 of 1)	intron (NR_135132, intron 1 of 1)	-3956	NR_046367	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
229604	chr9	123749751	123750050	+	0	NA	intron (NR_148208, intron 5 of 20)	intron (NR_148208, intron 5 of 20)	180226	NM_001352968	57706		NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
211192	chr7	102605151	102605250	+	0	NA	intron (NM_001079877, intron 5 of 19)	intron (NM_001079877, intron 5 of 19)	11556	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
186124	chr5	134145481	134147000	+	0	NA	exon (NM_003202, exon 10 of 10)	exon (NM_003202, exon 10 of 10)	22622	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
120975	chr19	45715571	45715750	+	0	NA	promoter-TSS (NM_001329632)	promoter-TSS (NM_001329632)	-382	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
197388	chr6	73497021	73497550	+	0	NA	intron (NM_133645, intron 11 of 12)	AluSx|SINE|Alu	21153	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
205548	chr7	20276701	20277100	+	0	NA	Intergenic	L2c|LINE|L2	-19808	NR_110117	101927769		NR_110117	ENSG00000226097	LOC101927769	-	uncharacterized LOC101927769	ncRNA
70370	chr14	101889401	101889600	+	0	NA	intron (NM_178587, intron 5 of 11)	L2b|LINE|L2	-75073	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
57273	chr12	121628771	121629250	+	0	NA	intron (NM_032790, intron 2 of 2)	AluY|SINE|Alu	2460	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
177772	chr4	122732171	122733580	+	0	NA	promoter-TSS (NR_024041)	promoter-TSS (NR_024041)	171	NM_152618	166379		NM_152618	ENSG00000181004	BBS12	C4orf24	Bardet-Biedl syndrome 12	protein-coding
82393	chr16	16145101	16145300	+	0	NA	Intergenic	Intergenic	78271	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
56476	chr12	116148821	116149150	+	0	NA	promoter-TSS (NR_030351)	promoter-TSS (NR_030351)	-331	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
192400	chr6	24821171	24821530	+	0	NA	intron (NM_014722, intron 20 of 22)	AluSp|SINE|Alu	-22433	NM_001282492	101928603		NM_001282492	ENSG00000260286	ARMH2	C6orf229	armadillo like helical domain containing 2	protein-coding
185873	chr5	132659571	132660700	+	0	NA	intron (NM_001354991, intron 4 of 4)	intron (NM_001354991, intron 4 of 4)	1962	NM_002188	3596		NM_002188	ENSG00000169194	IL13	IL-13|P600	interleukin 13	protein-coding
195698	chr6	38698671	38699130	+	0	NA	intron (NM_006708, intron 1 of 5)	intron (NM_006708, intron 1 of 5)	4245	NM_006708	2739		NM_006708	ENSG00000124767	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
52070	chr12	54038571	54038730	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	4700	NR_030753	693200		NR_030753	ENSG00000207571	MIR615	MIRN615|hsa-mir-615|mir-615	microRNA 615	ncRNA
69822	chr14	99219951	99220850	+	0	NA	intron (NM_022898, intron 2 of 2)	L1MB3|LINE|L1	51797	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
229954	chr9	126684471	126684630	+	0	NA	intron (NM_001174147, intron 2 of 7)	MIRb|SINE|MIR	70622	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
211049	chr7	102450151	102450680	+	0	NA	3' UTR (NM_001126340, exon 4 of 4)	3' UTR (NM_001126340, exon 4 of 4)	14448	NM_017621	54784		NM_017621	ENSG00000160993	ALKBH4	ABH4	alkB homolog 4, lysine demethylase	protein-coding
219901	chr8	85821071	85821230	+	0	NA	Intergenic	AluJb|SINE|Alu	6792	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
69993	chr14	100040321	100040580	+	0	NA	intron (NM_001330221, intron 1 of 13)	intron (NM_001330221, intron 1 of 13)	-24972	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
136259	chr2	174635901	174636280	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-1485	NM_001375839	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
85245	chr16	48355071	48355230	+	0	NA	3' UTR (NM_001300948, exon 14 of 14)	3' UTR (NM_001300948, exon 14 of 14)	10737	NM_001006610	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
206257	chr7	29277621	29278280	+	0	NA	intron (NM_001293072, intron 1 of 12)	MIRb|SINE|MIR	-68980	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
58162	chr12	124948271	124948630	+	0	NA	intron (NM_032656, intron 25 of 26)	AluJb|SINE|Alu	32903	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
21776	chr1	206925061	206925950	+	0	NA	Intergenic	MIRb|SINE|MIR	-3564	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
20078	chr1	186306151	186307130	+	0	NA	exon (NM_001127709, exon 5 of 11)	exon (NM_001127709, exon 5 of 11)	10361	NM_005807	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
24741	chr1	248567501	248567900	+	0	NA	Intergenic	L1M3a|LINE|L1	7057	NM_001001821	127068		NM_001001821	ENSG00000183310	OR2T34	-	olfactory receptor family 2 subfamily T member 34	protein-coding
57086	chr12	121028301	121028980	+	0	NA	intron (NM_003733, intron 3 of 5)	MLT1K|LTR|ERVL-MaLR	10602	NM_003733	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
200428	chr6	135002351	135002880	+	0	NA	intron (NM_006620, intron 5 of 17)	intron (NM_006620, intron 5 of 17)	-23183	NR_037435	100500880		NR_037435	ENSG00000283409	MIR3662	mir-3662	microRNA 3662	ncRNA
3902	chr1	17181751	17182080	+	0	NA	Intergenic	Intergenic	-7874	NR_148993	400743		NR_148993	ENSG00000204362	LINC02783	-	long intergenic non-protein coding RNA 2783	ncRNA
78339	chr15	91021621	91022880	+	0	NA	promoter-TSS (NR_110104)	promoter-TSS (NR_110104)	344	NM_018668	26276		NM_018668	ENSG00000184056	VPS33B	KDIDAR|PFIC12	VPS33B late endosome and lysosome associated	protein-coding
148477	chr20	64049111	64049980	+	0	NA	promoter-TSS (NM_018419)	promoter-TSS (NM_018419)	94	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
7613	chr1	35451001	35451600	+	0	NA	intron (NM_024874, intron 13 of 20)	intron (NM_024874, intron 13 of 20)	-85223	NR_046659	100861513		NR_046659	ENSG00000227409	ZMYM4-AS1	-	ZMYM4 antisense RNA 1	ncRNA
8277	chr1	39919351	39919950	+	0	NA	Intergenic	Intergenic	-17733	NM_005376	4610		NM_005376	ENSG00000116990	MYCL	L-Myc|LMYC|MYCL1|bHLHe38	MYCL proto-oncogene, bHLH transcription factor	protein-coding
29922	chr10	73297101	73297300	+	0	NA	intron (NM_001367801, intron 15 of 27)	intron (NM_001367801, intron 15 of 27)	44459	NR_134460	414245		NR_038373	ENSG00000236756	DNAJC9-AS1	C10orf103|bA537A6.3	DNAJC9 and MRPS16 antisense RNA 1	ncRNA
122979	chr19	50798801	50799480	+	0	NA	promoter-TSS (NR_003068)	promoter-TSS (NR_003068)	-15	NR_003068	692203		NR_003068	ENSG00000221381	SNORD88B	HBII-180B	small nucleolar RNA, C/D box 88B	snoRNA
40449	chr11	64210271	64210680	+	0	NA	intron (NM_001382363, intron 1 of 13)	intron (NM_001382363, intron 1 of 13)	2769	NM_001382364	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
29893	chr10	73098151	73098250	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-1226	NM_001017962	5033		NM_000917	ENSG00000122884	P4HA1	P4HA	prolyl 4-hydroxylase subunit alpha 1	protein-coding
79733	chr16	1330401	1331130	+	0	NA	Intergenic	Intergenic	-2880	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
105082	chr17	82104951	82105050	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-6764	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
168195	chr3	141076821	141077280	+	0	NA	intron (NM_080862, intron 2 of 2)	intron (NM_080862, intron 2 of 2)	25703	NM_080862	92369		NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
16957	chr1	155933851	155935250	+	0	NA	promoter-TSS (NM_014949)	promoter-TSS (NM_014949)	-137	NM_014949	22889		NM_014949	ENSG00000132680	KHDC4	BLOM7|KIAA0907|SNORA80EHG	KH domain containing 4, pre-mRNA splicing factor	protein-coding
186999	chr5	139744271	139744430	+	0	NA	intron (NR_105053, intron 2 of 2)	intron (NR_105053, intron 2 of 2)	1873	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
219378	chr8	70391421	70391800	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	11780	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
41266	chr11	65840451	65840550	+	0	NA	intron (NM_152760, intron 1 of 12)	L1ME3|LINE|L1	6537	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
225267	chr9	34378171	34378330	+	0	NA	TTS (NM_147169)	TTS (NM_147169)	-1352	NM_020702	57462		NM_020702	ENSG00000164976	MYORG	IBGC7|KIAA1161|NET37	myogenesis regulating glycosidase (putative)	protein-coding
33075	chr10	110890321	110890680	+	0	NA	intron (NM_145341, intron 8 of 12)	intron (NM_145341, intron 8 of 12)	-7590	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
63317	chr13	114002351	114002600	+	0	NA	intron (NM_001320822, intron 18 of 23).2	intron (NM_001320822, intron 18 of 23).2	-28399	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
195666	chr6	38161171	38161530	+	0	NA	Intergenic	L1MB5|LINE|L1	-320246	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
211227	chr7	102638201	102639200	+	0	NA	intron (NM_032959, intron 8 of 8)	intron (NM_032959, intron 8 of 8)	4091	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
211343	chr7	104944901	104945730	+	0	NA	Intergenic	Intergenic	-18670	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
44312	chr11	102360701	102362100	+	0	NA	intron (NM_001256166, intron 3 of 8)	intron (NM_001256166, intron 3 of 8)	14026	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
196065	chr6	42215951	42216050	+	0	NA	intron (NM_018141, intron 1 of 6)	(T)n|Simple_repeat|Simple_repeat	1861	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
205989	chr7	26185501	26186100	+	0	NA	3' UTR (NM_004289, exon 4 of 4)	3' UTR (NM_004289, exon 4 of 4)	14946	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
125064	chr2	9625221	9625750	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	5512	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
135987	chr2	172179171	172179580	+	0	NA	Intergenic	Intergenic	76369	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
174790	chr4	48036871	48037030	+	0	NA	3' UTR (NM_207330, exon 6 of 6)	3' UTR (NM_207330, exon 6 of 6)	20178	NM_207330	152519		NM_207330	ENSG00000163293	NIPAL1	NIPA3|NPAL1|SLC57A3	NIPA like domain containing 1	protein-coding
111024	chr19	3060901	3061900	+	0	NA	intron (NM_198969, intron 1 of 6)	CpG	1095	NM_001130	166		NM_001130	ENSG00000104964	TLE5	AES|AES-1|AES-2|ESP1|GRG|GRG5|Grg-5	TLE family member 5, transcriptional modulator	protein-coding
99926	chr17	57068451	57068550	+	0	NA	Intergenic	AluJb|SINE|Alu	-16746	NM_003488	8165		NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding
7786	chr1	36233301	36233800	+	0	NA	intron (NM_001321471, intron 2 of 12)	intron (NM_001321471, intron 2 of 12)	9107	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
214558	chr7	150565351	150565680	+	0	NA	Intergenic	HERVK14C-int|LTR|ERVK	-1855	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
64878	chr14	35339871	35340430	+	0	NA	Intergenic	Intergenic	47768	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
42898	chr11	73374321	73374580	+	0	NA	Intergenic	Intergenic	-1949	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
118570	chr19	36218671	36219030	+	0	NA	intron (NM_007145, intron 2 of 3)	AluY|SINE|Alu	3744	NM_007145	7705		NM_007145	ENSG00000167635	ZNF146	OZF	zinc finger protein 146	protein-coding
116856	chr19	18609201	18609630	+	0	NA	Intergenic	Intergenic	-2616	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
222072	chr8	130326971	130327600	+	0	NA	intron (NM_001362924, intron 3 of 30)	MamRTE1|LINE|RTE-BovB	-30752	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
208071	chr7	56085471	56085830	+	0	NA	intron (NM_001258459, intron 4 of 10)	L2c|LINE|L2	7302	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
62054	chr13	91357471	91357930	+	0	NA	Intergenic	Intergenic	6386	NR_029508	407048		NR_029508	ENSG00000283705	MIR92A1	C13orf25|MIR17HG|MIR92-1|MIRH1|MIRHG1|MIRN92-1|MIRN92A-1|MIRN92A1|miRNA92-1|mir-92a-1	microRNA 92a-1	ncRNA
193141	chr6	29625121	29625380	+	0	NA	intron (NM_021903, intron 1 of 17).7	intron (NM_021903, intron 1 of 17).7	2978	NM_021903	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
213096	chr7	131114621	131114950	+	0	NA	intron (NM_001145354, intron 1 of 18)	AluSz6|SINE|Alu	4691	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
160890	chr3	33733371	33733730	+	0	NA	Intergenic	AluY|SINE|Alu	-15296	NM_001365629	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
16435	chr1	154571251	154571550	+	0	NA	exon (NM_000748, exon 5 of 6)	exon (NM_000748, exon 5 of 6)	3622	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
202727	chr6	158911721	158913180	+	0	NA	Intergenic	MIR|SINE|MIR	23973	NR_160979	100130967		NM_001195032	ENSG00000203711	LINC02901	C6orf99	long intergenic non-protein coding RNA 2901	ncRNA
132729	chr2	109212771	109213000	+	0	NA	intron (NM_001099289, intron 1 of 9)	L2b|LINE|L2	-71297	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
174461	chr4	39729901	39730100	+	0	NA	intron (NM_001111113, intron 1 of 4)	intron (NM_001111113, intron 1 of 4)	31864	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
183852	chr5	87081401	87082000	+	0	NA	Intergenic	Intergenic	33254	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
62542	chr13	99610721	99610980	+	0	NA	intron (NM_206808, intron 1 of 8)	L1M4|LINE|L1	4160	NR_104592	171425		NM_206808	ENSG00000125246	CLYBL	CLB	citramalyl-CoA lyase	protein-coding
38177	chr11	36354151	36354850	+	0	NA	intron (NM_001160167, intron 1 of 8)	intron (NM_001160167, intron 1 of 8)	-21485	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
121295	chr19	46727571	46727730	+	0	NA	intron (NM_001039877, intron 8 of 17)	intron (NM_001039877, intron 8 of 17)	-10523	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
90114	chr16	90107571	90108030	+	0	NA	intron (NR_126161, intron 2 of 3)	Tigger3c|DNA|TcMar-Tigger	5536	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
61146	chr13	48707321	48707650	+	0	NA	exon (NM_001308476, exon 5 of 5)	exon (NM_001308476, exon 5 of 5)	53556	NM_001308476	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
44588	chr11	108277021	108277480	+	0	NA	intron (NM_000051, intron 22 of 62)	L1P3|LINE|L1	53721	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
162431	chr3	48427721	48427980	+	0	NA	intron (NM_001130082, intron 1 of 37)	intron (NM_001130082, intron 1 of 37)	1613	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
42191	chr11	67990071	67990940	+	0	NA	TTS (NM_030930)	TTS (NM_030930)	13592	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
64171	chr14	22930401	22930930	+	0	NA	intron (NR_110002, intron 1 of 2)	intron (NR_110002, intron 1 of 2)	1056	NR_110002	101926933		NR_110002	ENSG00000257285	PRMT5-DT	-	PRMT5 divergent transcript	ncRNA
7720	chr1	36106571	36107380	+	0	NA	intron (NM_001294347, intron 2 of 3)	intron (NM_001294347, intron 2 of 3)	18083	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
51147	chr12	50126251	50126550	+	0	NA	Intergenic	AluSg|SINE|Alu	14164	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
33999	chr10	124683401	124684530	+	0	NA	intron (NM_014661, intron 3 of 4)	intron (NM_014661, intron 3 of 4)	-20063	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
238349	chrX	149554801	149555000	+	0	NA	3' UTR (NM_001324276, exon 6 of 6)	3' UTR (NM_001324276, exon 6 of 6)	-4976	NM_001323079	101928917		NM_001323079	ENSG00000283697	HSFX3	-	heat shock transcription factor family, X-linked member 3	protein-coding
223549	chr8	144202651	144203470	+	0	NA	intron (NM_032450, intron 12 of 43)	CpG	54415	NM_001288814	727957		NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat like repeat family member 1	protein-coding
214770	chr7	151088771	151088930	+	0	NA	intron (NM_001350103, intron 1 of 18)	L2|LINE|L2	2375	NM_001350103	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
108347	chr18	67273321	67273780	+	0	NA	Intergenic	L1PA15|LINE|L1	191966	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
4348	chr1	20651821	20652080	+	0	NA	TTS (NM_032409)	TTS (NM_032409)	243	NR_046507	100861548		NR_046507	ENSG00000117242	PINK1-AS	NAPINK1|PINK1-AS1|PINK1AS	PINK1 antisense RNA	ncRNA
118758	chr19	38372571	38372730	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1921	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
231224	chr9	129965751	129965850	+	0	NA	intron (NM_001363755, intron 4 of 15)	GA-rich|Low_complexity|Low_complexity	77389	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
135502	chr2	161991601	161991800	+	0	NA	TTS (NM_001379606)	TTS (NM_001379606)	82515	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
202671	chr6	158786601	158786800	+	0	NA	intron (NM_003379, intron 3 of 12)	intron (NM_003379, intron 3 of 12)	-21947	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
228672	chr9	107299271	107299700	+	0	NA	intron (NM_001244713, intron 1 of 9)	MIR3|SINE|MIR	14716	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
109933	chr19	1315421	1316530	+	0	NA	Intergenic	CpG	30102	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
111846	chr19	4579271	4579680	+	0	NA	Intergenic	Intergenic	-19791	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
108223	chr18	63187021	63187480	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	132519	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
169495	chr3	169772701	169774300	+	0	NA	promoter-TSS (NM_001185119)	promoter-TSS (NM_001185119)	104	NR_033702	55892		NM_018657	ENSG00000085274	MYNN	OSZF|SBBIZ1|ZBTB31|ZNF902	myoneurin	protein-coding
90774	chr17	2066021	2066430	+	0	NA	intron (NM_001282326, intron 4 of 6)	intron (NM_001282326, intron 4 of 6)	9915	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
101922	chr17	74462271	74462750	+	0	NA	Intergenic	Intergenic	-3863	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
48789	chr12	11765601	11766400	+	0	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	116326	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
28606	chr10	56622371	56622600	+	0	NA	Intergenic	Intergenic	-261212	NM_001005413	11130		NM_007057	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|SIP30|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
38717	chr11	46678771	46679150	+	0	NA	3' UTR (NM_004308, exon 13 of 13)	3' UTR (NM_004308, exon 13 of 13)	21659	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
173076	chr4	6195921	6196380	+	0	NA	intron (NM_144720, intron 1 of 12)	intron (NM_144720, intron 1 of 12)	-1531	NM_001306134	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
64711	chr14	34161621	34161880	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-210676	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
25623	chr10	8079521	8079980	+	0	NA	Intergenic	Intergenic	25062	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
90615	chr17	1638171	1638950	+	0	NA	intron (NM_145350, intron 8 of 10).2	intron (NM_145350, intron 8 of 10).2	7172	NM_145350	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
175785	chr4	77796871	77797800	+	0	NA	intron (NM_001365006, intron 1 of 11)	Tigger7|DNA|TcMar-Tigger	21729	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
133296	chr2	113600801	113601200	+	0	NA	intron (NR_024004, intron 2 of 2)	intron (NR_024004, intron 2 of 2)	576	NR_024005	84771		NM_032685		DDX11L2	-	DEAD/H-box helicase 11 like 2 (pseudogene)	pseudo
8682	chr1	41917701	41918680	+	0	NA	intron (NR_038260, intron 1 of 2)	CpG	732	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
149177	chr21	18245071	18245430	+	0	NA	promoter-TSS (NM_001204174)	promoter-TSS (NM_001204174)	417	NM_024944	140578		NM_024944	ENSG00000154645	CHODL	C21orf68|MT75|PRED12	chondrolectin	protein-coding
17298	chr1	156443771	156444000	+	0	NA	Intergenic	AluSx|SINE|Alu	-14337	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
89888	chr16	89667151	89667250	+	0	NA	intron (NM_001271910, intron 2 of 2)	LTR13|LTR|ERVK	9132	NR_073515	124045		NM_153025	ENSG00000167523	SPATA33	C16orf55	spermatogenesis associated 33	protein-coding
221568	chr8	125125451	125126050	+	0	NA	intron (NR_146191, intron 3 of 8)	LTR40a|LTR|ERVL	33890	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
172888	chr4	3444421	3444900	+	0	NA	exon (NM_001297439, exon 7 of 15)	exon (NM_001297439, exon 7 of 15)	2692	NM_001297439	3083		NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
215528	chr7	158766871	158767030	+	0	NA	intron (NM_020728, intron 8 of 21)	intron (NM_020728, intron 8 of 21)	-62146	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
4930	chr1	23914221	23914480	+	0	NA	promoter-TSS (NM_001841)	promoter-TSS (NM_001841)	-988	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
13753	chr1	116986751	116987800	+	0	NA	3' UTR (NM_020440, exon 9 of 9)	3' UTR (NM_020440, exon 9 of 9)	-14475	NM_001256111	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
184182	chr5	95821001	95821500	+	0	NA	intron (NM_001118890, intron 1 of 2)	intron (NM_001118890, intron 1 of 2)	1476	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
8211	chr1	39672721	39673300	+	0	NA	promoter-TSS (NM_032526)	promoter-TSS (NM_032526)	-972	NM_032526	84618		NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
199809	chr6	127464951	127465280	+	0	NA	intron (NM_001012279, intron 7 of 11)	intron (NM_001012279, intron 7 of 11)	-5726	NM_014702	9729		NM_014702	ENSG00000189367	KIAA0408	-	KIAA0408	protein-coding
140933	chr2	237729101	237729380	+	0	NA	intron (NM_001137550, intron 8 of 23)	intron (NM_001137550, intron 8 of 23)	37035	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
99650	chr17	50695121	50695550	+	0	NA	3' UTR (NM_052855, exon 5 of 5)	3' UTR (NM_052855, exon 5 of 5)	12579	NM_052855	91369		NM_052855	ENSG00000154945	ANKRD40	-	ankyrin repeat domain 40	protein-coding
125681	chr2	20322821	20323280	+	0	NA	intron (NM_015317, intron 2 of 20)	MIR|SINE|MIR	4336	NM_001282791	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
63259	chr13	113949571	113950350	+	0	NA	Intergenic	Intergenic	-20969	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
53316	chr12	64605851	64606350	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-4395	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
210448	chr7	100106571	100106730	+	0	NA	TTS (NM_001365004)	TTS (NM_001365004)	5002	NM_001363671	9179		NM_004722	ENSG00000221838	AP4M1	CPSQ3|MU-4|MU-ARP2|SPG50	adaptor related protein complex 4 subunit mu 1	protein-coding
189225	chr5	171858501	171858700	+	0	NA	Intergenic	Intergenic	72783	NM_001289970	644994		NM_001289970	ENSG00000185662	SMIM23	C5orf50	small integral membrane protein 23	protein-coding
171404	chr3	196202521	196203000	+	0	NA	intron (NR_135617, intron 5 of 8)	L2|LINE|L2	8640	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
613	chr1	1314721	1316330	+	0	NA	exon (NM_017871, exon 5 of 17)	exon (NM_017871, exon 5 of 17)	-2959	NR_106785	102465435		NR_106785	ENSG00000283712	MIR6727	hsa-mir-6727	microRNA 6727	ncRNA
188935	chr5	160467401	160468500	+	0	NA	promoter-TSS (NR_132748)	promoter-TSS (NR_132748)	-301	NR_132748	107075116		NR_132748	ENSG00000253522	MIR3142HG	-	MIR3142 host gene	ncRNA
127391	chr2	41853821	41854080	+	0	NA	Intergenic	Intergenic	-23605	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
166139	chr3	111545201	111545750	+	0	NA	intron (NR_134917, intron 2 of 14)	intron (NR_134917, intron 2 of 14)	3278	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
62445	chr13	99337701	99338680	+	0	NA	intron (NR_026644, intron 6 of 8)	AluSz6|SINE|Alu	-13230	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
41806	chr11	66882901	66883400	+	0	NA	intron (NM_001040716, intron 3 of 22)	intron (NM_001040716, intron 3 of 22)	24803	NM_022172	5091		NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
89181	chr16	88558901	88559730	+	0	NA	TTS (NR_146877)	TTS (NR_146877)	2668	NR_146877	400555		NM_001001682		ZC3H18-AS1	C16orf85|LINC00859	ZC3H18 antisense RNA 1 (head to head)	ncRNA
179398	chr4	183725751	183726050	+	0	NA	Intergenic	LTR12_|LTR|ERV1	66607	NM_021942	60684		NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S|LGMDR18	trafficking protein particle complex subunit 11	protein-coding
98602	chr17	47747321	47748000	+	0	NA	Intergenic	HAL1b|LINE|L1	14424	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
71507	chr14	106045151	106045560	+	0	NA	Intergenic	Intergenic	-73086	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
226033	chr9	42568351	42569630	+	0	NA	intron (NR_126050, intron 1 of 1)	CpG	359	NR_126050	103908605		NR_126050		FAM88E	-	family with sequence similarity 88 member E	ncRNA
201029	chr6	141562071	141563150	+	0	NA	Intergenic	Intergenic	-570549	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
216353	chr8	17155651	17157680	+	0	NA	promoter-TSS (NM_001362988)	promoter-TSS (NM_001362988)	183	NM_016353	51201		NM_016353	ENSG00000104219	ZDHHC2	DHHC2|ZNF372	zinc finger DHHC-type palmitoyltransferase 2	protein-coding
131027	chr2	88058251	88058550	+	0	NA	Intergenic	Intergenic	-2617	NM_001304526	51315		NM_016618	ENSG00000172086	KRCC1	CHBP2	lysine rich coiled-coil 1	protein-coding
16532	chr1	154945851	154946830	+	0	NA	exon (NM_020524, exon 10 of 11)	exon (NM_020524, exon 10 of 11)	-3682	NM_001323012	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
115984	chr19	17078551	17079100	+	0	NA	intron (NM_004145, intron 1 of 39)	intron (NM_004145, intron 1 of 39)	3048	NM_004145	4650		NM_004145	ENSG00000099331	MYO9B	CELIAC4|MYR5	myosin IXB	protein-coding
230179	chr9	127790271	127791230	+	0	NA	TTS (NM_001261)	TTS (NM_001261)	4716	NM_001261	1025		NM_001261	ENSG00000136807	CDK9	C-2k|CDC2L4|CTK1|PITALRE|TAK	cyclin dependent kinase 9	protein-coding
100177	chr17	58634301	58634500	+	0	NA	intron (NM_198393, intron 2 of 32)	AluSz|SINE|Alu	57645	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
171172	chr3	195651661	195651900	+	0	NA	intron (NR_136185, intron 1 of 2)	intron (NR_136185, intron 1 of 2)	379	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
236628	chrX	74572001	74572200	+	0	NA	Intergenic	AluSx1|SINE|Alu	42524	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
50380	chr12	47226071	47226750	+	0	NA	intron (NM_138371, intron 3 of 3)	AluSz|SINE|Alu	-9967	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
67087	chr14	68251321	68251580	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	377337	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
77283	chr15	82198001	82198300	+	0	NA	intron (NR_136410, intron 15 of 19)	intron (NR_136410, intron 15 of 19)	64378	NM_001322845	79631		NM_024580	ENSG00000140598	EFL1	EFTUD1|FAM42A|HsT19294|RIA1|SDS2	elongation factor like GTPase 1	protein-coding
221596	chr8	125506621	125506880	+	0	NA	Intergenic	AluSx1|SINE|Alu	74541	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
229260	chr9	117644471	117645150	+	0	NA	Intergenic	Intergenic	-3796	NR_109806	101928797		NR_109806	ENSG00000233569	LOC101928797	-	uncharacterized LOC101928797	ncRNA
76486	chr15	74893471	74894530	+	0	NA	intron (NM_001330372, intron 5 of 7)	intron (NM_001330372, intron 5 of 7)	3958	NM_001289157	4351		NM_002435	ENSG00000178802	MPI	CDG1B|PMI|PMI1	mannose phosphate isomerase	protein-coding
43403	chr11	77147051	77147230	+	0	NA	intron (NM_001369365, intron 4 of 49)	L2a|LINE|L2	18894	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
220693	chr8	101494151	101494450	+	0	NA	intron (NM_001330593, intron 1 of 15)	intron (NM_001330593, intron 1 of 15)	1861	NM_001330593	79977		NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|PPCD4|TFCP2L3	grainyhead like transcription factor 2	protein-coding
223988	chr9	2059521	2060100	+	0	NA	intron (NM_003070, intron 8 of 33)	intron (NM_003070, intron 8 of 33)	37865	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
113899	chr19	10687251	10687350	+	0	NA	intron (NM_012218, intron 17 of 19)	(CCTTC)n|Simple_repeat|Simple_repeat	-14139	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
74369	chr15	58756021	58756280	+	0	NA	Intergenic	Intergenic	-6443	NM_001320570	102		NM_001110	ENSG00000137845	ADAM10	AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz	ADAM metallopeptidase domain 10	protein-coding
153819	chr22	29733551	29734130	+	0	NA	intron (NM_001318129, intron 5 of 5)	intron (NM_001318129, intron 5 of 5)	13837	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
80296	chr16	2262001	2262200	+	0	NA	intron (NM_080594, intron 6 of 7)	PABL_A|LTR|ERV1	5237	NM_001286625	10921		NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
22388	chr1	218351221	218351900	+	0	NA	intron (NM_003238, intron 1 of 6)	intron (NM_003238, intron 1 of 6)	-5882	NR_046268	728463		NR_046268		TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
209332	chr7	76202821	76203380	+	0	NA	intron (NM_001291831, intron 1 of 15)	intron (NM_001291831, intron 1 of 15)	1204	NM_001110199	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
156877	chr22	42120071	42121230	+	0	NA	intron (NR_034118, intron 3 of 4)	AluSx|SINE|Alu	10158	NM_001348386	1564		NM_001002910		CYP2D7	CYP2D|CYP2D6|CYP2D7AP|CYP2D7P|CYP2D7P1|CYP2D@|P450C2D|P450DB1|RNA40057	cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)	protein-coding
217792	chr8	33533301	33533800	+	0	NA	Intergenic	MER50|LTR|ERV1	20075	NR_003041	692084		NR_003041	ENSG00000239039	SNORD13	RNU13|SNORD13A|U13	small nucleolar RNA, C/D box 13	snoRNA
54132	chr12	76529371	76529530	+	0	NA	intron (NM_001003712, intron 1 of 22)	intron (NM_001003712, intron 1 of 22)	30321	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
138324	chr2	203779001	203779200	+	0	NA	Intergenic	AluY|SINE|Alu	72461	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123524	chr19	54241321	54241580	+	0	NA	intron (NR_104098, intron 4 of 9).3	intron (NR_104098, intron 4 of 9).3	1340	NM_024318	79168		NM_024318	ENSG00000244482	LILRA6	CD85b|ILT-8|ILT5|ILT8|LILRB3|LILRB6	leukocyte immunoglobulin like receptor A6	protein-coding
66477	chr14	61578651	61578960	+	0	NA	intron (NR_039985, intron 1 of 2)	L1M5|LINE|L1	-8152	NR_110416	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
21116	chr1	203625351	203626200	+	0	NA	Intergenic	Intergenic	-1012	NM_001001396	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
179366	chr4	183426751	183427250	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-17636	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
77076	chr15	78902201	78902700	+	0	NA	Intergenic	LTR13A|LTR|ERVK	29461	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
87509	chr16	71850771	71850930	+	0	NA	exon (NM_001137675, exon 3 of 3)	exon (NM_001137675, exon 3 of 3)	4874	NM_001137675	342371		NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1 like	protein-coding
201323	chr6	144409871	144410430	+	0	NA	intron (NM_007124, intron 2 of 73)	intron (NM_007124, intron 2 of 73)	4495	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
216059	chr8	10325851	10326550	+	0	NA	intron (NM_001199729, intron 6 of 6).2	intron (NM_001199729, intron 6 of 6).2	-148365	NR_120604	101929191		NR_120604	ENSG00000253641	LINC03022	LINCR-0001	long intergenic non-protein coding RNA 3022	ncRNA
22512	chr1	221794021	221794900	+	0	NA	Intergenic	Intergenic	46206	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
160642	chr3	31562171	31563050	+	0	NA	intron (NM_178862, intron 1 of 15)	L1MA4A|LINE|L1	29685	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
194410	chr6	33057151	33057600	+	0	NA	Intergenic	Intergenic	16302	NM_033554	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
226339	chr9	69474921	69475180	+	0	NA	intron (NM_001163, intron 3 of 12)	intron (NM_001163, intron 3 of 12)	145725	NM_004816	9413		NM_004816	ENSG00000135063	ENTREP1	C9orf61|ENTREP|FAM189A2|X123	endosomal transmembrane epsin interactor 1	protein-coding
72080	chr15	28906301	28906500	+	0	NA	intron (NM_001379685, intron 2 of 15)	L1ME3G|LINE|L1	-15237	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
131249	chr2	96012721	96013530	+	0	NA	intron (NR_003698, intron 1 of 3)	intron (NR_003698, intron 1 of 3)	2574	NR_003698	729234		NR_003698		FAHD2CP	-	fumarylacetoacetate hydrolase domain containing 2C, pseudogene	pseudo
201247	chr6	144054821	144056130	+	0	NA	promoter-TSS (NM_001317159)	promoter-TSS (NM_001317159)	-213	NM_001317159	5325		NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
83527	chr16	27465901	27466100	+	0	NA	intron (NM_001520, intron 32 of 36)	intron (NM_001520, intron 32 of 36)	-12607	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
232175	chr9	134175071	134175780	+	0	NA	Intergenic	Intergenic	-10861	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
65692	chr14	52735001	52735200	+	0	NA	intron (NM_001130701, intron 2 of 11)	MLT1K|LTR|ERVL-MaLR	4934	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
167941	chr3	136191801	136192550	+	0	NA	intron (NM_018133, intron 1 of 1)	intron (NM_018133, intron 1 of 1)	2293	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
49383	chr12	22418201	22418600	+	0	NA	Intergenic	L1MA9|LINE|L1	-83686	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
220794	chr8	102652851	102652950	+	0	NA	intron (NM_005655, intron 1 of 3)	intron (NM_005655, intron 1 of 3)	1064	NR_103759	7071		NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	KLF transcription factor 10	protein-coding
95085	chr17	33968321	33968900	+	0	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	188196	NM_001094	40		NM_001094	ENSG00000108684	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid sensing ion channel subunit 2	protein-coding
101044	chr17	64800421	64801080	+	0	NA	non-coding (NR_024386, exon 6 of 11)	non-coding (NR_024386, exon 6 of 11)	-18751	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
183956	chr5	88268171	88269800	+	0	NA	promoter-TSS (NM_001349402)	promoter-TSS (NM_001349402)	-31	NR_039994	100505894		NR_039993	ENSG00000247828	TMEM161B-DT	TMEM161B-AS1|linc-POLR3G-8	TMEM161B divergent transcript	ncRNA
238043	chrX	135383221	135383630	+	0	NA	Intergenic	Intergenic	-13004	NR_104652	100506790		NR_104652	ENSG00000290806	LOC100506790	-	uncharacterized LOC100506790	ncRNA
170927	chr3	194276651	194276830	+	0	NA	Intergenic	Intergenic	-26587	NR_125403	100505920		NR_125403		LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
116602	chr19	18269951	18270600	+	0	NA	intron (NM_001145304, intron 1 of 3)	AluSq2|SINE|Alu	4177	NM_001145304	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
52969	chr12	57473571	57473800	+	0	NA	exon (NM_032496, exon 17 of 18)	exon (NM_032496, exon 17 of 18)	4182	NM_001319851	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
92516	chr17	8900201	8900400	+	0	NA	intron (NM_001142633, intron 5 of 18)	LTR37B|LTR|ERV1	12217	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
139980	chr2	230906951	230907250	+	0	NA	TTS (NM_005683)	TTS (NM_005683)	18142	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
38925	chr11	47452871	47453030	+	0	NA	Intergenic	Intergenic	-3814	NM_032645	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
91112	chr17	3679921	3680250	+	0	NA	intron (NM_002561, intron 10 of 11)	intron (NM_002561, intron 10 of 11)	11273	NM_031298	83460		NM_031298	ENSG00000127774	EMC6	RAB5IFL|TMEM93	ER membrane protein complex subunit 6	protein-coding
164487	chr3	60017421	60018350	+	0	NA	intron (NM_001320901, intron 2 of 6)	MLT1G1|LTR|ERVL-MaLR	63024	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
133268	chr2	113476921	113477180	+	0	NA	intron (NM_172003, intron 10 of 14)	L1PA3|LINE|L1	-22034	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
10641	chr1	70220901	70222400	+	0	NA	non-coding (NR_146810, exon 1 of 13)	non-coding (NR_146810, exon 1 of 13)	270	NM_001350613	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
212747	chr7	129918121	129918580	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	34610	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
85032	chr16	31709201	31709630	+	0	NA	Intergenic	Intergenic	-3814	NM_001130913	124411		NM_001004300	ENSG00000197302	KRBOX5	ZNF720	KRAB box domain containing 5	protein-coding
183606	chr5	80209071	80209230	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluSz6|SINE|Alu	46898	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
147257	chr20	57430071	57430230	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-37094	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
107075	chr18	34860221	34861180	+	0	NA	intron (NM_001198939, intron 14 of 21)	intron (NM_001198939, intron 14 of 21)	42319	NM_032981	1837		NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding
23347	chr1	228143501	228143700	+	0	NA	intron (NM_000858, intron 2 of 8)	intron (NM_000858, intron 2 of 8)	-1096	NM_001159391	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
86701	chr16	67539421	67540750	+	0	NA	exon (NM_001193522, exon 7 of 22)	exon (NM_001193522, exon 7 of 22)	2623	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
116952	chr19	18855701	18855900	+	0	NA	intron (NM_001297549, intron 11 of 23)	AluJb|SINE|Alu	23841	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
202358	chr6	157754301	157755000	+	0	NA	Intergenic	Intergenic	-68596	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
230146	chr9	127743621	127744200	+	0	NA	intron (NM_170600, intron 7 of 11)	intron (NM_170600, intron 7 of 11)	-8616	NM_001134430	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
144753	chr20	36602151	36602680	+	0	NA	intron (NM_001199535, intron 2 of 4)	AluSp|SINE|Alu	-3364	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
19055	chr1	169809521	169810030	+	0	NA	intron (NM_001320048, intron 7 of 22)	intron (NM_001320048, intron 7 of 22)	14735	NM_001366770	55732		NM_018186	ENSG00000000460	FIRRM	Apolo1|C1orf112|FLIP|MEICA1	FIGNL1 interacting regulator of recombination and mitosis	protein-coding
129183	chr2	68177501	68177900	+	0	NA	Intergenic	AluJo|SINE|Alu	19812	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
130640	chr2	86103921	86104380	+	0	NA	intron (NM_015425, intron 1 of 33)	L2|LINE|L2	1736	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
75427	chr15	65787501	65788500	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	4293	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
195531	chr6	37304071	37304230	+	0	NA	intron (NM_017772, intron 8 of 12)	intron (NM_017772, intron 8 of 12)	-45995	NR_104443								
23149	chr1	226720951	226721630	+	0	NA	intron (NM_002221, intron 2 of 7)	AluSp|SINE|Alu	17885	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
35217	chr11	821671	821830	+	0	NA	exon (NM_020376, exon 3 of 10)	exon (NM_020376, exon 3 of 10)	2836	NM_020376	57104		NM_020376	ENSG00000177666	PNPLA2	1110001C14Rik|ATGL|FP17548|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin like phospholipase domain containing 2	protein-coding
41281	chr11	65854251	65854650	+	0	NA	TTS (NM_152760)	TTS (NM_152760)	3730	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
45289	chr11	118050571	118050730	+	0	NA	intron (NM_001354434, intron 2 of 5)	intron (NM_001354434, intron 2 of 5)	-26362	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
171068	chr3	195438971	195439830	+	0	NA	intron (NM_012287, intron 1 of 22)	AluJr|SINE|Alu	3620	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
7964	chr1	37753871	37754550	+	0	NA	intron (NM_001099439, intron 4 of 16)	CpG	10910	NM_001099439	284656		NM_173641	ENSG00000183317	EPHA10	DFNA88	EPH receptor A10	protein-coding
166267	chr3	112469621	112470180	+	0	NA	intron (NM_001085357, intron 2 of 3)	intron (NM_001085357, intron 2 of 3)	29572	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
195816	chr6	41199371	41199900	+	0	NA	intron (NM_024807, intron 1 of 4)	intron (NM_024807, intron 1 of 4)	1514	NM_024807	79865		NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
143233	chr20	24988901	24989500	+	0	NA	intron (NM_020531, intron 1 of 8)	intron (NM_020531, intron 1 of 8)	3551	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
14910	chr1	147178001	147178200	+	0	NA	non-coding (NR_002305, exon 1 of 1)	non-coding (NR_002305, exon 1 of 1)	249	NR_002305	171423		NR_002305		PDIA3P1	ERp60|GRP58P|PDIA3P	protein disulfide isomerase family A member 3 pseudogene 1	pseudo
185324	chr5	126792501	126793050	+	0	NA	intron (NR_134488, intron 1 of 11)	AluSp|SINE|Alu	15639	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
3671	chr1	16483201	16483630	+	0	NA	non-coding (NR_023386, exon 10 of 15)	non-coding (NR_023386, exon 10 of 15)	9286	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
217547	chr8	29337671	29337830	+	0	NA	intron (NM_057158, intron 4 of 4)	AluSz|SINE|Alu	11055	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
151254	chr21	45319451	45319750	+	0	NA	Intergenic	Intergenic	22390	NR_103811	388830		NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
88827	chr16	87461421	87461700	+	0	NA	intron (NM_015144, intron 1 of 12)	intron (NM_015144, intron 1 of 12)	31464	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
59940	chr13	31158801	31159550	+	0	NA	intron (NM_001286504, intron 1 of 17)	intron (NM_001286504, intron 1 of 17)	2729	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
101450	chr17	67447671	67447830	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-23739	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
45938	chr11	121290901	121291200	+	0	NA	Intergenic	L1PA8|LINE|L1	-1721	NM_006918	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
44043	chr11	95157171	95157330	+	0	NA	intron (NR_110303, intron 1 of 2)	intron (NR_110303, intron 1 of 2)	6711	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
176533	chr4	98148871	98149030	+	0	NA	Intergenic	L1MB2|LINE|L1	-5474	NM_174952	285555		NM_174952	ENSG00000163116	STPG2	C4orf37	sperm tail PG-rich repeat containing 2	protein-coding
39113	chr11	48081001	48081400	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-15582	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
179730	chr5	211201	212000	+	0	NA	intron (NM_145265, intron 2 of 2)	CpG	6553	NM_145265	133957		NM_145265	ENSG00000164366	CCDC127	-	coiled-coil domain containing 127	protein-coding
204675	chr7	5493171	5493900	+	0	NA	intron (NM_024963, intron 3 of 4)	AluY|SINE|Alu	2382	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
128090	chr2	47899151	47899250	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluY|SINE|Alu	6138	NM_001374325	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
169213	chr3	157081021	157082480	+	0	NA	promoter-TSS (NR_135546)	promoter-TSS (NR_135546)	-91	NR_135546	105374177		NR_135546	ENSG00000241544	LINC02029	-	long intergenic non-protein coding RNA 2029	ncRNA
212592	chr7	129045721	129046050	+	0	NA	intron (NR_167926, intron 1 of 21)	MER3|DNA|hAT-Charlie	9226	NM_001382222	23534		NM_012470	ENSG00000064419	TNPO3	IPO12|LGMD1F|LGMDD2|MTR10A|TRN-SR|TRN-SR2|TRNSR	transportin 3	protein-coding
120318	chr19	43506701	43506900	+	0	NA	TTS (NM_014297)	TTS (NM_014297)	-1967	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
6545	chr1	28635051	28635450	+	0	NA	intron (NM_005644, intron 1 of 5)	AluY|SINE|Alu	7817	NM_005644	6883		NM_005644	ENSG00000120656	TAF12	TAF2J|TAFII20	TATA-box binding protein associated factor 12	protein-coding
156371	chr22	41084051	41084150	+	0	NA	Intergenic	AluY|SINE|Alu	-8413	NR_031694	100302237		NR_031694	ENSG00000284015	MIR1281	MIRN1281|hsa-mir-1281	microRNA 1281	ncRNA
173049	chr4	5704351	5704650	+	0	NA	intron (NM_001166136, intron 1 of 21)	L2a|LINE|L2	4059	NM_147127	132884		NM_147127	ENSG00000173040	EVC2	LBN|WAD	EvC ciliary complex subunit 2	protein-coding
169982	chr3	179558751	179559250	+	0	NA	Intergenic	Intergenic	-3880	NM_177989	86		NM_004301	ENSG00000136518	ACTL6A	ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K|SMARCN1	actin like 6A	protein-coding
198944	chr6	110561701	110561900	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-85187	NM_033125	85413		NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
60528	chr13	41448951	41449250	+	0	NA	Intergenic	SATR2|Satellite|Satellite	6536	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
73242	chr15	41695721	41696480	+	0	NA	exon (NM_001080541, exon 3 of 23)	exon (NM_001080541, exon 3 of 23)	4515	NR_030356	693211		NR_030356	ENSG00000207766	MIR626	MIRN626|hsa-mir-626	microRNA 626	ncRNA
144654	chr20	36067101	36067500	+	0	NA	Intergenic	AluY|SINE|Alu	-16340	NR_027451	647979		NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
74167	chr15	55303201	55303600	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-13587	NM_183235	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
111879	chr19	4654721	4655450	+	0	NA	3' UTR (NM_001167942, exon 2 of 2)	3' UTR (NM_001167942, exon 2 of 2)	15068	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
9793	chr1	53584001	53584350	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	124776	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
10010	chr1	55208651	55208830	+	0	NA	intron (NM_015306, intron 1 of 67)	AluSq4|SINE|Alu	6624	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
81584	chr16	10266821	10267080	+	0	NA	Intergenic	Intergenic	-84042	NM_000833	2903		NM_000833	ENSG00000183454	GRIN2A	EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A	glutamate ionotropic receptor NMDA type subunit 2A	protein-coding
158702	chr3	7867551	7867880	+	0	NA	Intergenic	Intergenic	148592	NR_110131	101927394		NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
173192	chr4	6779571	6779930	+	0	NA	Intergenic	Intergenic	-2977	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
130996	chr2	87798651	87799050	+	0	NA	intron (NM_001382344, intron 8 of 22).2	AluY|SINE|Alu	26917	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
146370	chr20	49273571	49274130	+	0	NA	intron (NM_021035, intron 2 of 13)	AluJb|SINE|Alu	4207	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
47175	chr12	787471	787830	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	34727	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
40943	chr11	65313671	65313830	+	0	NA	Intergenic	L2a|LINE|L2	-1116	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
238376	chrX	149936201	149936400	+	0	NA	intron (NM_001013845, intron 2 of 4)	intron (NM_001013845, intron 2 of 4)	2191	NM_001013845	541578		NM_001013845	ENSG00000197021	EOLA2	CXorf40B	endothelium and lymphocyte associated ASCH domain 2	protein-coding
223576	chr8	144270901	144271500	+	0	NA	intron (NM_015201, intron 3 of 15)	CpG	4747	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
144904	chr20	36945671	36945830	+	0	NA	intron (NM_001363733, intron 2 of 15)	AluSx|SINE|Alu	5958	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
146845	chr20	51425401	51426000	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	27277	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
156908	chr22	42256851	42257280	+	0	NA	intron (NM_005650, intron 1 of 5)	AluJr|SINE|Alu	-12688	NR_036498	388906		NR_036498		OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
203138	chr6	166950271	166950490	+	0	NA	intron (NM_003730, intron 2 of 8)	intron (NM_003730, intron 2 of 8)	6170	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
32101	chr10	101163501	101163700	+	0	NA	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-12722	NR_120620	101927396		NR_120620	ENSG00000237579	LINC01514	-	long intergenic non-protein coding RNA 1514	ncRNA
15680	chr1	150960171	150960530	+	0	NA	intron (NM_012432, intron 15 of 21)	AluSx|SINE|Alu	14485	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
63779	chr14	21263321	21263580	+	0	NA	intron (NM_004500, intron 1 of 8)	intron (NM_004500, intron 1 of 8)	5992	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
20436	chr1	198496621	198496880	+	0	NA	Intergenic	AluJr|SINE|Alu	43930	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
173343	chr4	7758901	7760300	+	0	NA	3' UTR (NM_001134647, exon 18 of 18)	3' UTR (NM_001134647, exon 18 of 18)	5510	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
214123	chr7	144197951	144198250	+	0	NA	intron (NR_126022, intron 1 of 4).3	(CT)n|Simple_repeat|Simple_repeat	-2221	NM_001368318	445328		NM_001003702	ENSG00000213214	ARHGEF35	ARHGEF5L	Rho guanine nucleotide exchange factor 35	protein-coding
234171	chrX	11761051	11761430	+	0	NA	intron (NM_001282174, intron 4 of 11)	intron (NM_001282174, intron 4 of 11)	1593	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
13273	chr1	112804171	112804480	+	0	NA	Intergenic	Intergenic	46318	NR_103746	100996702		NR_103746	ENSG00000215866	LINC01356	LIMp27	long intergenic non-protein coding RNA 1356	ncRNA
173227	chr4	6914271	6915030	+	0	NA	intron (NM_020773, intron 1 of 13)	intron (NM_020773, intron 1 of 13)	4824	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
180256	chr5	1655351	1655600	+	0	NA	Intergenic	Intergenic	-21470	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
69499	chr14	95525071	95525630	+	0	NA	Intergenic	AluJr|SINE|Alu	8279	NR_003002	677768		NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA
188502	chr5	154857371	154859850	+	0	NA	promoter-TSS (NM_001301082)	promoter-TSS (NM_001301082)	-17	NM_004779	9337		NM_004779	ENSG00000155508	CNOT8	CAF1|CALIF|Caf1b|POP2|hCAF1	CCR4-NOT transcription complex subunit 8	protein-coding
156658	chr22	41640071	41640430	+	0	NA	intron (NM_001288976, intron 6 of 12)	AluY|SINE|Alu	18955	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
198022	chr6	90132121	90132380	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	164593	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
56038	chr12	110446901	110447100	+	0	NA	intron (NM_001287222, intron 1 of 6)	MER63D|DNA|hAT-Blackjack	3337	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
32808	chr10	109913001	109913280	+	0	NA	intron (NM_001324132, intron 1 of 19)	intron (NM_001324132, intron 1 of 19)	10106	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
6847	chr1	31055101	31055830	+	0	NA	intron (NM_014676, intron 2 of 21)	intron (NM_014676, intron 2 of 21)	10252	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
165500	chr3	100073621	100073950	+	0	NA	intron (NM_182909, intron 1 of 5)	intron (NM_182909, intron 1 of 5)	40728	NM_001042459	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
219915	chr8	86163621	86163880	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	64840	NM_152565	245972		NM_152565	ENSG00000147614	ATP6V0D2	ATP6D2|VMA6	ATPase H+ transporting V0 subunit d2	protein-coding
146527	chr20	49938801	49939200	+	0	NA	intron (NM_018683, intron 1 of 5)	intron (NM_018683, intron 1 of 5)	2603	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
13086	chr1	111588101	111588600	+	0	NA	intron (NM_001370216, intron 1 of 7)	L2a|LINE|L2	19968	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
127897	chr2	46236621	46236880	+	0	NA	Intergenic	Intergenic	-60657	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
130968	chr2	87542521	87542830	+	0	NA	Intergenic	Intergenic	72725	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
36543	chr11	6605351	6605450	+	0	NA	TTS (NM_006284)	TTS (NM_006284)	1626	NM_001014795	3611		NM_004517	ENSG00000166333	ILK	HEL-S-28|ILK-1|ILK-2|P59|p59ILK	integrin linked kinase	protein-coding
57061	chr12	120906971	120907130	+	0	NA	intron (NR_131215, intron 1 of 1)	AluSz|SINE|Alu	2355	NR_131215	105500240		NR_131215		XLOC_009911	-	uncharacterized LOC105500240	ncRNA
127436	chr2	42168851	42170350	+	0	NA	5' UTR (NM_001145076, exon 1 of 22)	5' UTR (NM_001145076, exon 1 of 22)	247	NM_019063	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
90432	chr17	1355801	1356630	+	0	NA	intron (NR_024058, intron 5 of 6)	(AC)n|Simple_repeat|Simple_repeat	44007	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
131276	chr2	96092071	96092430	+	0	NA	Intergenic	Intergenic	24321	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
87421	chr16	70682301	70682700	+	0	NA	intron (NM_138383, intron 1 of 14)	intron (NM_138383, intron 1 of 14)	3553	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
37036	chr11	12152121	12152380	+	0	NA	intron (NR_144417, intron 2 of 26)	AluSx1|SINE|Alu	-9829	NM_001282667	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
76260	chr15	74053901	74054350	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	28425	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
122842	chr19	50436271	50436750	+	0	NA	intron (NM_004533, intron 4 of 27)	intron (NM_004533, intron 4 of 27)	3618	NM_004533	4606		NM_004533	ENSG00000086967	MYBPC2	MYBPC|MYBPCF|fsMyBP-C	myosin binding protein C2	protein-coding
108841	chr18	79156471	79156960	+	0	NA	intron (NM_198531, intron 7 of 29)	intron (NM_198531, intron 7 of 29)	87321	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
159145	chr3	12661871	12662400	+	0	NA	intron (NM_001354691, intron 1 of 16)	AluJo|SINE|Alu	1373	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
171096	chr3	195498701	195499100	+	0	NA	Intergenic	Intergenic	44425	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
220288	chr8	98038001	98038500	+	0	NA	Intergenic	AluJr4|SINE|Alu	3967	NR_002581	26775		NR_002581	ENSG00000207067	SNORA72	RNU72|U72	small nucleolar RNA, H/ACA box 72	snoRNA
135935	chr2	171924021	171924450	+	0	NA	intron (NR_027862, intron 1 of 9)	AluSc|SINE|Alu	1774	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
217825	chr8	37318001	37318600	+	0	NA	Intergenic	Intergenic	175613	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
233407	chr9	137573371	137573930	+	0	NA	intron (NM_001346386, intron 4 of 7)	AluY|SINE|Alu	4942	NM_001346373	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
103409	chr17	78186401	78187630	+	0	NA	promoter-TSS (NM_001145526)	promoter-TSS (NM_001145526)	37	NM_001346663	7083		NM_003258	ENSG00000167900	TK1	TK2	thymidine kinase 1	protein-coding
80485	chr16	2707221	2708130	+	0	NA	3' UTR (NM_018992, exon 6 of 6)	3' UTR (NM_018992, exon 6 of 6)	12549	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
116420	chr19	18007701	18009280	+	0	NA	exon (NM_015683, exon 1 of 8)	exon (NM_015683, exon 1 of 8)	320	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
51349	chr12	51482851	51483600	+	0	NA	intron (NM_001039960, intron 16 of 24)	intron (NM_001039960, intron 16 of 24)	58108	NM_001258403	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
55341	chr12	103962721	103963180	+	0	NA	Intergenic	L1ME1|LINE|L1	-2854	NM_001363612	6996		NM_003211	ENSG00000139372	TDG	hTDG	thymine DNA glycosylase	protein-coding
76295	chr15	74302921	74303180	+	0	NA	intron (NM_025055, intron 11 of 18)	intron (NM_025055, intron 11 of 18)	-15509	NM_001287181	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
90254	chr17	864071	864230	+	0	NA	promoter-TSS (NM_001205319)	promoter-TSS (NM_001205319)	-39	NM_001205319	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
19989	chr1	185045041	185046330	+	0	NA	intron (NM_007212, intron 1 of 6)	CpG	127	NM_007212	6045		NM_007212	ENSG00000121481	RNF2	BAP-1|BAP1|DING|HIPI3|LUSYAM|RING1B|RING2	ring finger protein 2	protein-coding
14635	chr1	145469771	145470130	+	0	NA	Intergenic	AluJo|SINE|Alu	-64172	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
158887	chr3	9902101	9903480	+	0	NA	promoter-TSS (NM_153481)	promoter-TSS (NM_153481)	-58	NM_001193380	132014		NM_144640	ENSG00000163701	IL17RE	-	interleukin 17 receptor E	protein-coding
199998	chr6	128478201	128478900	+	0	NA	intron (NM_001291981, intron 1 of 32).2	intron (NM_001291981, intron 1 of 32).2	42049	NM_001291982	5796		NM_002844	ENSG00000152894	PTPRK	R-PTP-kappa	protein tyrosine phosphatase receptor type K	protein-coding
69563	chr14	96796621	96798240	+	0	NA	promoter-TSS (NM_003384)	promoter-TSS (NM_003384)	48	NM_003384	7443		NM_003384	ENSG00000100749	VRK1	HMNR10|PCH1|PCH1A	VRK serine/threonine kinase 1	protein-coding
212768	chr7	129952021	129953730	+	0	NA	promoter-TSS (NM_001202498)	promoter-TSS (NM_001202498)	85	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
215601	chr7	159026521	159026780	+	0	NA	TTS (NR_024394)	TTS (NR_024394)	18296	NR_024394	154822		NM_198345	ENSG00000231419	LINC00689	STORM	long intergenic non-protein coding RNA 689	ncRNA
133247	chr2	113272721	113273330	+	0	NA	intron (NM_013952, intron 2 of 11)	intron (NM_013952, intron 2 of 11)	5896	NM_013953	7849		NM_003466	ENSG00000125618	PAX8	PAX-8	paired box 8	protein-coding
113371	chr19	8754501	8755100	+	0	NA	Intergenic	AluSp|SINE|Alu	23846	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
225654	chr9	36398721	36399200	+	0	NA	intron (NM_194330, intron 1 of 11)	intron (NM_194330, intron 1 of 11)	1309	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
203249	chr6	169241671	169242030	+	0	NA	exon (NM_001381939, exon 5 of 21)	exon (NM_001381939, exon 5 of 21)	11996	NM_001381940	7058		NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
35709	chr11	1936451	1937150	+	0	NA	intron (NM_001367843, intron 14 of 14)	intron (NM_001367843, intron 14 of 14)	-10532	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
31701	chr10	97643201	97643400	+	0	NA	intron (NM_018425, intron 1 of 8)	intron (NM_018425, intron 1 of 8)	2614	NM_018425	55361		NM_018425	ENSG00000155252	PI4K2A	NEDMSB|PI4KII|PIK42A	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
128523	chr2	60744901	60745100	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-11268	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
133323	chr2	113895221	113895630	+	0	NA	intron (NM_001277140, intron 1 of 11)	L2b|LINE|L2	-4433	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
188706	chr5	157308171	157308330	+	0	NA	intron (NM_014376, intron 9 of 30)	intron (NM_014376, intron 9 of 30)	37427	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
21093	chr1	203329951	203330450	+	0	NA	Intergenic	Intergenic	20922	NR_103757	2331		NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding
210838	chr7	100998701	100998900	+	0	NA	exon (NM_001164462, exon 2 of 12)	exon (NM_001164462, exon 2 of 12)	18808	NR_120519	102724094		NR_120519	ENSG00000227053	MUC12-AS1	-	MUC12 antisense RNA 1	ncRNA
19238	chr1	172642171	172642550	+	0	NA	Intergenic	Intergenic	-16648	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
111897	chr19	4677201	4677850	+	0	NA	intron (NR_158699, intron 22 of 22)	intron (NR_158699, intron 22 of 22)	-1757	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
151817	chr22	18378071	18378630	+	0	NA	intron (NR_165634, intron 4 of 11)	intron (NR_165634, intron 4 of 11)	8206	NR_136569	729461		NM_201401	ENSG00000274044	FAM230J	LINC01660	family with sequence similarity 230 member J	ncRNA
18164	chr1	160783351	160783650	+	0	NA	Intergenic	L1P1|LINE|L1	-12674	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
225904	chr9	39873371	39874980	+	0	NA	non-coding (NR_003670, exon 1 of 3)	non-coding (NR_003670, exon 1 of 3)	318	NR_126049	554249		NR_126049		FAM88D	-	family with sequence similarity 88 member D	ncRNA
215951	chr8	8375301	8375500	+	0	NA	intron (NR_163138, intron 3 of 6)	AluY|SINE|Alu	10844	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
176112	chr4	83055021	83055280	+	0	NA	intron (NM_001330727, intron 4 of 10)	intron (NM_001330727, intron 4 of 10)	19967	NM_016129	51138		NM_016129	ENSG00000138663	COPS4	CSN4|SGN4	COP9 signalosome subunit 4	protein-coding
108396	chr18	69889651	69889830	+	0	NA	intron (NM_006566, intron 4 of 6)	intron (NM_006566, intron 4 of 6)	58133	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
200976	chr6	139362901	139363100	+	0	NA	Intergenic	L2a|LINE|L2	11213	NM_001168389	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
10147	chr1	60063721	60063980	+	0	NA	intron (NM_152377, intron 2 of 11)	intron (NM_152377, intron 2 of 11)	9920	NM_152377	127795		NM_152377	ENSG00000162598	C1orf87	CREF	chromosome 1 open reading frame 87	protein-coding
88446	chr16	84925151	84925550	+	0	NA	Intergenic	Intergenic	86185	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
201268	chr6	144180821	144181280	+	0	NA	intron (NM_003764, intron 1 of 1)	intron (NM_003764, intron 1 of 1)	30533	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
91248	chr17	3959151	3959450	+	0	NA	intron (NM_174953, intron 1 of 22)	intron (NM_174953, intron 1 of 22)	5137	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
225753	chr9	37146321	37146980	+	0	NA	intron (NM_001289119, intron 2 of 8)	intron (NM_001289119, intron 2 of 8)	26052	NM_001289120	84186		NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
111436	chr19	3804251	3804600	+	0	NA	3' UTR (NM_015174, exon 19 of 19)	3' UTR (NM_015174, exon 19 of 19)	-2626	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
78511	chr15	92936471	92937400	+	0	NA	intron (NM_001042572, intron 5 of 12)	AluJr4|SINE|Alu	32536	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
233044	chr9	137049751	137050780	+	0	NA	intron (NM_203468, intron 6 of 8)	intron (NM_203468, intron 6 of 8)	3796	NM_001246	954		NM_001246	ENSG00000054179	ENTPD2	CD39L1|NTPDase-2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding
134695	chr2	144489801	144490410	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-29509	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
221825	chr8	128062801	128063200	+	0	NA	intron (NR_003367, intron 5 of 8)	MIRb|SINE|MIR	13848	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
57303	chr12	121658421	121659530	+	0	NA	intron (NM_173855, intron 2 of 5)	intron (NM_173855, intron 2 of 5)	10679	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
190570	chr5	180828801	180829300	+	0	NA	TTS (NR_045680)	TTS (NR_045680)	-1907	NR_027183	729678		NR_027183	ENSG00000245060	LINC00847	-	long intergenic non-protein coding RNA 847	ncRNA
70200	chr14	100549751	100549850	+	0	NA	intron (NM_001385101, intron 1 of 5)	intron (NM_001385101, intron 1 of 5)	-1673	NM_001385104	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
215865	chr8	7521251	7522030	+	0	NA	Intergenic	Intergenic	-17987	NM_001282479	100131608		NM_001282479	ENSG00000255251	PRR23D1	PRR23D2	proline rich 23 domain containing 1	protein-coding
74879	chr15	63581301	63581830	+	0	NA	intron (NR_046342, intron 12 of 15)	AluSx4|SINE|Alu	-15822	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
45547	chr11	118772401	118772830	+	0	NA	intron (NM_004397, intron 4 of 13)	L1MB8|LINE|L1	18333	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
75846	chr15	69497151	69497450	+	0	NA	Intergenic	Intergenic	44482	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
119061	chr19	39125371	39126780	+	0	NA	intron (NM_001014834, intron 1 of 7)	CpG	289	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
56255	chr12	112002151	112003230	+	0	NA	intron (NM_138341, intron 2 of 9)	MIRb|SINE|MIR	10475	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
209560	chr7	77348401	77348600	+	0	NA	intron (NM_001350897, intron 18 of 29)	intron (NM_001350897, intron 18 of 29)	-66698	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
201296	chr6	144336901	144337580	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	45503	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
206763	chr7	36702271	36702850	+	0	NA	intron (NM_001177506, intron 1 of 21)	Tigger1|DNA|TcMar-Tigger	21934	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
226682	chr9	75090771	75091450	+	0	NA	intron (NM_012383, intron 1 of 9)	AluSg7|SINE|Alu	2596	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
194829	chr6	34390621	34391150	+	0	NA	intron (NM_001202470, intron 5 of 8)	intron (NM_001202470, intron 5 of 8)	1784	NM_006703	11165		NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
49344	chr12	22121201	22121550	+	0	NA	Intergenic	LTR1B1|LTR|ERV1	75157	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
215739	chr8	1813671	1814030	+	0	NA	Intergenic	Intergenic	-3381	NR_030326	693181		NR_030326	ENSG00000207826	MIR596	MIRN596|hsa-mir-596	microRNA 596	ncRNA
143421	chr20	29743501	29743800	+	0	NA	Intergenic	CpG	-136734	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
170620	chr3	187014571	187014730	+	0	NA	intron (NM_173216, intron 2 of 7)	intron (NM_173216, intron 2 of 7)	-7205	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
181860	chr5	53480621	53481130	+	0	NA	exon (NM_013409, exon 1 of 6)	exon (NM_013409, exon 1 of 6)	246	NM_006350	10468		NM_006350	ENSG00000134363	FST	FS	follistatin	protein-coding
233922	chrX	1764071	1764230	+	0	NA	Intergenic	Intergenic	149017	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
137489	chr2	197143801	197144000	+	0	NA	intron (NM_153697, intron 3 of 9)	AluSx1|SINE|Alu	-54091	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
207487	chr7	44641621	44641880	+	0	NA	intron (NM_001363523, intron 2 of 23)	intron (NM_001363523, intron 2 of 23)	35123	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
210467	chr7	100144851	100145150	+	0	NA	Intergenic	MER11B|LTR|ERVK	-3918	NM_001008395	389541		NM_001008395	ENSG00000188186	LAMTOR4	C7orf59	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding
147200	chr20	57349721	57350050	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-1370	NM_003610	8480		NM_003610	ENSG00000101146	RAE1	Gle2|MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1	ribonucleic acid export 1	protein-coding
157201	chr22	43142371	43143730	+	0	NA	exon (NM_014507, exon 1 of 3)	exon (NM_014507, exon 1 of 3)	347	NM_014507	27349		NM_014507	ENSG00000100294	MCAT	FASN2C|MCT|MCT1|MT|NET62|OPA15|fabD	malonyl-CoA-acyl carrier protein transacylase	protein-coding
139687	chr2	227363971	227364130	+	0	NA	intron (NM_024795, intron 3 of 3)	intron (NM_024795, intron 3 of 3)	15256	NM_024795	79853		NM_024795	ENSG00000168955	TM4SF20	PRO994|SLI5|TCCE518	transmembrane 4 L six family member 20	protein-coding
47416	chr12	2947451	2947550	+	0	NA	Intergenic	AluY|SINE|Alu	-11897	NM_201441	7004		NM_003213	ENSG00000197905	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain transcription factor 4	protein-coding
209689	chr7	82185451	82185550	+	0	NA	intron (NM_001302890, intron 3 of 10)	(GGGGGA)n|Simple_repeat|Simple_repeat	176323	NR_110076	101927356		NR_110076	ENSG00000223770	CACNA2D1-AS1	-	CACNA2D1 antisense RNA 1	ncRNA
190243	chr5	178585471	178585700	+	0	NA	intron (NM_173465, intron 1 of 28)	intron (NM_173465, intron 1 of 28)	4808	NM_173465	91522		NM_173465	ENSG00000050767	COL23A1	-	collagen type XXIII alpha 1 chain	protein-coding
103224	chr17	77488671	77489580	+	0	NA	intron (NM_001293697, intron 5 of 9)	intron (NM_001293697, intron 5 of 9)	13490	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
204941	chr7	6271701	6272000	+	0	NA	intron (NM_004227, intron 1 of 12)	CpG	774	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
84459	chr16	30444971	30446330	+	0	NA	exon (NM_012248, exon 1 of 1)	exon (NM_012248, exon 1 of 1)	224	NM_012248	22928		NM_012248	ENSG00000179918	SEPHS2	SPS2	selenophosphate synthetase 2	protein-coding
46213	chr11	123654771	123654930	+	0	NA	promoter-TSS (NM_001040151)	promoter-TSS (NM_001040151)	-226	NM_001040151	55800		NM_018400	ENSG00000166257	SCN3B	ATFB16|BRGDA7|HSA243396|SCNB3	sodium voltage-gated channel beta subunit 3	protein-coding
153420	chr22	24993971	24994330	+	0	NA	Intergenic	Intergenic	-33824	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
190327	chr5	179621321	179622100	+	0	NA	intron (NM_001364248, intron 2 of 12).2	intron (NM_001364248, intron 2 of 12).2	1691	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
55649	chr12	107308921	107309350	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-9299	NM_001347943	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
51641	chr12	53009101	53009530	+	0	NA	intron (NM_001300821, intron 1 of 14)	AluSx1|SINE|Alu	2859	NM_001330654	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
187364	chr5	141811471	141812030	+	0	NA	Intergenic	Intergenic	54452	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
54676	chr12	93396401	93397230	+	0	NA	intron (NM_001301023, intron 3 of 4)	AluSx4|SINE|Alu	18237	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
29221	chr10	69043721	69044810	+	0	NA	Intergenic	Intergenic	-43338	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
221547	chr8	124858651	124858750	+	0	NA	Intergenic	MIRc|SINE|MIR	-36642	NR_039809	100616255		NR_039809	ENSG00000263735	MIR4662B	-	microRNA 4662b	ncRNA
184205	chr5	95916121	95916380	+	0	NA	intron (NM_012081, intron 3 of 11)	L2b|LINE|L2	45601	NM_012081	22936		NM_012081	ENSG00000118985	ELL2	MRCCAT1	elongation factor for RNA polymerase II 2	protein-coding
212796	chr7	130198371	130198600	+	0	NA	intron (NR_156699, intron 5 of 14)	AluSq2|SINE|Alu	6921	NM_001301163	84928		NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
11380	chr1	89655251	89656100	+	0	NA	intron (NM_032270, intron 1 of 2)	MSTD|LTR|ERVL-MaLR	22555	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
77244	chr15	81301101	81301300	+	0	NA	intron (NM_172217, intron 14 of 18)	MIR|SINE|MIR	4230	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
147081	chr20	53833921	53834480	+	0	NA	Intergenic	Intergenic	41509	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
113908	chr19	10693271	10694030	+	0	NA	Intergenic	AluSx3|SINE|Alu	-7789	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
236501	chrX	71782421	71783200	+	0	NA	intron (NR_034005, intron 1 of 2).2	intron (NR_034005, intron 1 of 2).2	1568	NR_034004	100132741		NR_034004		LOC100132741	-	uncharacterized LOC100132741	ncRNA
203027	chr6	163671401	163671650	+	0	NA	promoter-TSS (NR_134620)	promoter-TSS (NR_134620)	-41	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
61022	chr13	48154671	48154830	+	0	NA	Intergenic	HAL1|LINE|L1	-59609	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
133029	chr2	111900651	111901050	+	0	NA	intron (NM_006343, intron 1 of 18)	intron (NM_006343, intron 1 of 18)	2243	NM_006343	10461		NM_006343	ENSG00000153208	MERTK	MER|RP38|Tyro12|c-Eyk|c-mer	MER proto-oncogene, tyrosine kinase	protein-coding
199966	chr6	127967171	127968230	+	0	NA	Intergenic	Intergenic	-49069	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
3182	chr1	13706271	13707000	+	0	NA	intron (NM_015866, intron 1 of 8)	intron (NM_015866, intron 1 of 8)	1780	NM_012231	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
141163	chr2	239262551	239262980	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-42697	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
68338	chr14	77603871	77604100	+	0	NA	intron (NM_004863, intron 1 of 11)	intron (NM_004863, intron 1 of 11)	12652	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
206664	chr7	36291301	36292080	+	0	NA	intron (NM_030636, intron 6 of 7)	intron (NM_030636, intron 6 of 7)	75550	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
104191	chr17	80452971	80453280	+	0	NA	Intergenic	Intergenic	23482	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
89687	chr16	89386551	89387230	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-44028	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
209717	chr7	86970851	86971350	+	0	NA	intron (NM_001142749, intron 1 of 21)	intron (NM_001142749, intron 1 of 21)	-5201	NM_152748	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
139719	chr2	227848651	227848950	+	0	NA	Intergenic	Intergenic	-22576	NM_001330004	164781		NM_178821	ENSG00000123977	DAW1	CILD52|DNAAF18|ODA16|WDR69	dynein assembly factor with WD repeats 1	protein-coding
83170	chr16	23469751	23470450	+	0	NA	exon (NM_015044, exon 15 of 17)	exon (NM_015044, exon 15 of 17)	-16911	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
113658	chr19	10379001	10379230	+	0	NA	intron (NM_001385207, intron 2 of 24)	AluSq2|SINE|Alu	1457	NM_001385207	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
158506	chr3	3125371	3125530	+	0	NA	Intergenic	MIRb|SINE|MIR	-1490	NR_159938	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
5738	chr1	26434451	26434830	+	0	NA	intron (NM_205861, intron 2 of 8)	intron (NM_205861, intron 2 of 8)	2319	NM_205861	79947		NM_024887	ENSG00000117682	DHDDS	CIT|CPT|DEDSM|DS|HDS|RP59|hCIT	dehydrodolichyl diphosphate synthase subunit	protein-coding
150252	chr21	41428301	41428500	+	0	NA	intron (NM_001178046, intron 2 of 14)	intron (NM_001178046, intron 2 of 14)	2161	NM_002462	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
127879	chr2	45951401	45951680	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	299865	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
39326	chr11	59144401	59145380	+	0	NA	promoter-TSS (NM_001369457)	promoter-TSS (NM_001369457)	28	NM_001369457	63901		NM_022074	ENSG00000166801	FAM111A	GCLEB|KCS2	FAM111 trypsin like peptidase A	protein-coding
108368	chr18	68676901	68677230	+	0	NA	exon (NM_001350516, exon 14 of 14)	exon (NM_001350516, exon 14 of 14)	38043	NM_001350517	54495		NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
157080	chr22	42611301	42611500	+	0	NA	intron (NM_001278657, intron 1 of 8)	intron (NM_001278657, intron 1 of 8)	3483	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
223772	chr8	144535221	144535530	+	0	NA	intron (NM_001308207, intron 7 of 11)	intron (NM_001308207, intron 7 of 11)	-6264	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
34839	chr11	310151	310580	+	0	NA	TTS (NM_006435)	TTS (NM_006435)	2258	NM_006435	10581		NM_006435	ENSG00000185201	IFITM2	1-8D|DSPA2c	interferon induced transmembrane protein 2	protein-coding
99417	chr17	50086351	50086700	+	0	NA	intron (NM_002204, intron 23 of 25)	AluSx|SINE|Alu	-8212	NM_001199898	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
221792	chr8	127964471	127964630	+	0	NA	intron (NR_003367, intron 3 of 8)	MLT1C|LTR|ERVL-MaLR	3917	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
9999	chr1	55188751	55189150	+	0	NA	intron (NM_015306, intron 1 of 67)	AluSq|SINE|Alu	26414	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
1701	chr1	5111401	5111600	+	0	NA	Intergenic	Intergenic	456891	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
90930	chr17	2609371	2609930	+	0	NA	intron (NM_000430, intron 1 of 10)	AluSg|SINE|Alu	15996	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
100042	chr17	58052971	58053280	+	0	NA	Intergenic	L2|LINE|L2	30079	NR_110809	101927666		NR_110809	ENSG00000266290	DYNLL2-DT	-	DYNLL2 divergent transcript	ncRNA
155973	chr22	39902971	39903630	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	2216	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
217596	chr8	29641621	29642280	+	0	NA	Intergenic	Intergenic	106159	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
656	chr1	1357721	1358050	+	0	NA	intron (NM_001282583, intron 1 of 9)	MER54A|LTR|ERVL	662	NM_001282585	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
38209	chr11	36395751	36395850	+	0	NA	intron (NM_024841, intron 2 of 9)	AluJr4|SINE|Alu	-5197	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
51010	chr12	49683751	49684250	+	0	NA	intron (NM_175736, intron 1 of 25)	L2c|LINE|L2	23405	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
161743	chr3	44510341	44511480	+	0	NA	promoter-TSS (NM_001287349)	promoter-TSS (NM_001287349)	-293	NM_001287349	285346		NM_001287349	ENSG00000178917	ZNF852	-	zinc finger protein 852	protein-coding
81543	chr16	9108451	9108830	+	0	NA	intron (NM_014117, intron 3 of 3)	intron (NM_014117, intron 3 of 3)	16996	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
171229	chr3	195777201	195777400	+	0	NA	intron (NM_138297, intron 1 of 22)	intron (NM_138297, intron 1 of 22)	34629	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
230197	chr9	127808151	127808530	+	0	NA	intron (NR_110170, intron 9 of 14)	intron (NR_110170, intron 9 of 14)	5159	NM_001018078	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
32607	chr10	103591571	103592000	+	0	NA	3' UTR (NM_004210, exon 6 of 6)	3' UTR (NM_004210, exon 6 of 6)	-74343	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
22716	chr1	224170651	224171350	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12240	NM_001321541	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
100199	chr17	59104621	59105150	+	0	NA	intron (NR_148346, intron 1 of 23)	AluSz|SINE|Alu	1995	NM_001353082	4591		NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
146435	chr20	49641971	49642200	+	0	NA	intron (NM_004776, intron 5 of 8)	MIRb|SINE|MIR	71793	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
131138	chr2	91502771	91503330	+	0	NA	Intergenic	AluSx3|SINE|Alu	156899	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
40984	chr11	65386261	65387480	+	0	NA	intron (NM_001300832, intron 1 of 9)	CpG	233	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
178344	chr4	145909371	145909530	+	0	NA	intron (NM_178835, intron 1 of 14)	MLT1K|LTR|ERVL-MaLR	29373	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
169778	chr3	172710701	172711500	+	0	NA	promoter-TSS (NM_020792)	promoter-TSS (NM_020792)	-33	NM_020792	57552		NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
154186	chr22	31340171	31341050	+	0	NA	TTS (NM_032051)	TTS (NM_032051)	5261	NR_110542	101929760		NR_110542	ENSG00000228839	PIK3IP1-DT	PIK3IP1-AS1	PIK3IP1 divergent transcript	ncRNA
98979	chr17	48730721	48731700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2460	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
200949	chr6	139175221	139175750	+	0	NA	intron (NM_016217, intron 3 of 3)	intron (NM_016217, intron 3 of 3)	40405	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
130947	chr2	87509601	87510480	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	40090	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
170174	chr3	183641371	183641730	+	0	NA	intron (NM_001349422, intron 2 of 7)	intron (NM_001349422, intron 2 of 7)	5927	NR_146170	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
56614	chr12	118146001	118146400	+	0	NA	TTS (NM_002567)	TTS (NM_002567)	10076	NM_002567	5037		NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
218291	chr8	42385171	42386000	+	0	NA	Intergenic	Intergenic	-6176	NM_001135694	7419		NM_005662	ENSG00000078668	VDAC3	HD-VDAC3|VDAC-3	voltage dependent anion channel 3	protein-coding
219103	chr8	65932751	65932850	+	0	NA	Intergenic	Intergenic	-82178	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
167675	chr3	130029351	130029650	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-52331	NM_001136152	644974		NM_001136152	ENSG00000251287	ALG1L2	-	ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase like 2	protein-coding
149042	chr21	15020871	15021030	+	0	NA	intron (NM_003489, intron 2 of 3)	L1ME1|LINE|L1	44050	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
94030	chr17	27289921	27290180	+	0	NA	Intergenic	MIR|SINE|MIR	3946	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
80761	chr16	3165571	3166450	+	0	NA	Intergenic	LTR13|LTR|ERVK	21719	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
132691	chr2	108964521	108964780	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	24570	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
199612	chr6	119333521	119333980	+	0	NA	intron (NM_005907, intron 2 of 12)	intron (NM_005907, intron 2 of 12)	16011	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
56775	chr12	120180901	120181100	+	0	NA	intron (NM_006836, intron 5 of 57)	AluY|SINE|Alu	13715	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
231409	chr9	131046551	131047250	+	0	NA	intron (NM_006059, intron 8 of 27)	intron (NM_006059, intron 8 of 27)	37726	NM_006059	10319		NM_006059	ENSG00000050555	LAMC3	OCCM	laminin subunit gamma 3	protein-coding
101407	chr17	67384101	67384500	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	7019	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
62558	chr13	99913851	99913950	+	0	NA	intron (NR_120421, intron 1 of 4)	intron (NR_120421, intron 1 of 4)	43265	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
190821	chr6	1523821	1524980	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-81131	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
21323	chr1	204520851	204521590	+	0	NA	intron (NM_001204172, intron 1 of 2)	MLT1H2|LTR|ERVL-MaLR	4814	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
21475	chr1	205629701	205630230	+	0	NA	intron (NM_021795, intron 1 of 2)	AluSx3|SINE|Alu	2046	NM_001973	2005		NM_001973	ENSG00000158711	ELK4	SAP1	ETS transcription factor ELK4	protein-coding
149199	chr21	24076371	24076530	+	0	NA	Intergenic	Intergenic	244927	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
203276	chr6	169726151	169726650	+	0	NA	Intergenic	Intergenic	-1900	NM_018288	55274		NM_018288	ENSG00000130024	PHF10	BAF45A|SMARCG4|XAP135	PHD finger protein 10	protein-coding
161644	chr3	43311001	43311400	+	0	NA	intron (NM_017719, intron 3 of 6)	intron (NM_017719, intron 3 of 6)	24660	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
136216	chr2	174583071	174583500	+	0	NA	intron (NM_001375837, intron 2 of 4)	MIR3|SINE|MIR	14519	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
44084	chr11	95696621	95697080	+	0	NA	Intergenic	MER21A|LTR|ERVL	92932	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
92712	chr17	14196201	14197000	+	0	NA	intron (NM_001303, intron 6 of 6)	intron (NM_001303, intron 6 of 6)	40262	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
152364	chr22	20494221	20494480	+	0	NA	intron (NR_033825, intron 1 of 5)	AluJb|SINE|Alu	1445	NM_032775	84861		NM_032775	ENSG00000099910	KLHL22	KELCHL	kelch like family member 22	protein-coding
36584	chr11	6684251	6684350	+	0	NA	promoter-TSS (NM_022061)	promoter-TSS (NM_022061)	-960	NM_022061	63875		NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26|bL17m	mitochondrial ribosomal protein L17	protein-coding
202945	chr6	160989451	160989550	+	0	NA	Intergenic	AluJr|SINE|Alu	-2227	NM_001363582	4216		NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
61392	chr13	51581501	51581900	+	0	NA	Intergenic	L2c|LINE|L2	-2762	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
110208	chr19	1746251	1746750	+	0	NA	Intergenic	Intergenic	-7006	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
233450	chr9	137628151	137629530	+	0	NA	intron (NM_001354612, intron 1 of 8)	MIR3|SINE|MIR	9835	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
127846	chr2	45585271	45585700	+	0	NA	intron (NM_018079, intron 5 of 20)	intron (NM_018079, intron 5 of 20)	25782	NM_018079	55133		NM_018079	ENSG00000068784	SRBD1	-	S1 RNA binding domain 1	protein-coding
52747	chr12	56641601	56642800	+	0	NA	intron (NM_001686, intron 7 of 9)	AluSx3|SINE|Alu	1554	NR_003046	692090		NR_003046		SNORD59B	U59B	small nucleolar RNA, C/D box 59B	snoRNA
108431	chr18	69958401	69958800	+	0	NA	Intergenic	MamGypsy2-I|LTR|Gypsy	-1801	NM_006566	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
122432	chr19	49470001	49471280	+	0	NA	3' UTR (NM_153329, exon 17 of 17)	3' UTR (NM_153329, exon 17 of 17)	-3575	NM_001204502	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
135706	chr2	168973371	168973830	+	0	NA	intron (NM_003742, intron 13 of 27)	intron (NM_003742, intron 13 of 27)	57724	NM_003742	8647		NM_003742	ENSG00000073734	ABCB11	ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP	ATP binding cassette subfamily B member 11	protein-coding
53123	chr12	57832851	57833230	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	-8348	NR_029847	407016		NR_029847	ENSG00000207789	MIR26A2	MIRN26A2|mir-26a-2	microRNA 26a-2	ncRNA
182201	chr5	56829101	56829830	+	0	NA	intron (NM_005921, intron 1 of 19)	AluJb|SINE|Alu	13916	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
153602	chr22	27805801	27806000	+	0	NA	Intergenic	Intergenic	-4144	NM_002430	4330		NM_002430	ENSG00000169184	MN1	CEBALID|MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	MN1 proto-oncogene, transcriptional regulator	protein-coding
149924	chr21	36216051	36216230	+	0	NA	intron (NM_001320714, intron 9 of 36)	AluSg|SINE|Alu	51599	NM_005128	9980		NM_005128	ENSG00000142197	DOP1B	21orf5|C21orf5|DOPEY2	DOP1 leucine zipper like protein B	protein-coding
170402	chr3	185308171	185308430	+	0	NA	intron (NM_001242317, intron 2 of 12)	intron (NM_001242317, intron 2 of 12)	25339	NM_001242317	9175		NM_004721	ENSG00000073803	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
148234	chr20	63629421	63629750	+	0	NA	TTS (NR_132418)	TTS (NR_132418)	2350	NR_132418	100505771		NR_132417	ENSG00000232442	MHENCR	-	melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489	ncRNA
88628	chr16	85625051	85625150	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	11778	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
10349	chr1	64927621	64927950	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	38764	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
237095	chrX	104098251	104098630	+	0	NA	TTS (NM_001012755)	TTS (NM_001012755)	-14083	NR_026694	644353		NM_001143978	ENSG00000166707	ZCCHC18	PNMA7B|SIZN2	zinc finger CCHC-type containing 18	protein-coding
39096	chr11	48018801	48019700	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	38691	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
153952	chr22	30349321	30349580	+	0	NA	intron (NM_005877, intron 2 of 15)	AluSx1|SINE|Alu	-7174	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
8171	chr1	39538921	39539500	+	0	NA	intron (NR_144357, intron 8 of 11)	L2-1_AMi|LINE|L2	20488	NR_003929	728448		NR_003929	ENSG00000291129	PPIEL	PPIEP1	peptidylprolyl isomerase E like (pseudogene)	pseudo
165557	chr3	101479371	101479730	+	0	NA	intron (NM_001077203, intron 3 of 22)	AluJo|SINE|Alu	33662	NM_001282802	57337		NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
141310	chr2	240448271	240448630	+	0	NA	TTS (NR_161169)	TTS (NR_161169)	-7551	NR_029702	406941		NR_029702	ENSG00000207611	MIR149	MIRN149|mir-149	microRNA 149	ncRNA
182080	chr5	55986951	55987250	+	0	NA	intron (NR_157112, intron 1 of 17)	AluJb|SINE|Alu	7863	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
91951	chr17	7355251	7355350	+	0	NA	TTS (NM_001002914)	TTS (NM_001002914)	144	NM_001320436	339168		NM_198154	ENSG00000182896	TMEM95	UNQ9390	transmembrane protein 95	protein-coding
46335	chr11	125511951	125512650	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-15990	NM_022549	9638		NM_005103	ENSG00000149557	FEZ1	UNC-76	fasciculation and elongation protein zeta 1	protein-coding
95959	chr17	39094321	39095380	+	0	NA	intron (NM_020405, intron 7 of 13)	intron (NM_020405, intron 7 of 13)	37831	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
217568	chr8	29445651	29446180	+	0	NA	Intergenic	Intergenic	-95231	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
158381	chr22	50487571	50487730	+	0	NA	intron (NM_017584, intron 2 of 9)	intron (NM_017584, intron 2 of 9)	791	NM_017584	55586		NM_017584	ENSG00000100253	MIOX	ALDRL6	myo-inositol oxygenase	protein-coding
74661	chr15	61228971	61229330	+	0	NA	exon (NM_134261, exon 1 of 11)	exon (NM_134261, exon 1 of 11)	152	NM_134261	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
156899	chr22	42201651	42202750	+	0	NA	intron (NM_005650, intron 2 of 5)	intron (NM_005650, intron 2 of 5)	-57646	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
116819	chr19	18557471	18559200	+	0	NA	intron (NM_001171949, intron 1 of 4)	MIRb|SINE|MIR	465	NM_024069	79036		NM_024069	ENSG00000105700	KXD1	BORCS4|C10orf50|C19orf50|KXDL|MST096|MSTP096	KxDL motif containing 1	protein-coding
200588	chr6	136563871	136564450	+	0	NA	intron (NM_005923, intron 26 of 29)	intron (NM_005923, intron 26 of 29)	-13341	NM_003980	9053		NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
73811	chr15	48861821	48862330	+	0	NA	intron (NM_203349, intron 6 of 11)	intron (NM_203349, intron 6 of 11)	-16059	NM_014335	23741		NM_014335	ENSG00000255302	EID1	C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21	EP300 interacting inhibitor of differentiation 1	protein-coding
230222	chr9	127864121	127864380	+	0	NA	Intergenic	L1MC5a|LINE|L1	5245	NR_039819	100616429		NR_039819	ENSG00000263979	MIR4672	-	microRNA 4672	ncRNA
79604	chr16	1068471	1068800	+	0	NA	intron (NR_027242, intron 2 of 3)	intron (NR_027242, intron 2 of 3)	-4121	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
113877	chr19	10667271	10667430	+	0	NA	intron (NM_153464, intron 1 of 17)	AluY|SINE|Alu	13004	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
236386	chrX	71102121	71102400	+	0	NA	3' UTR (NM_001170931, exon 4 of 4)	3' UTR (NM_001170931, exon 4 of 4)	4480	NR_033212	158830		NM_001025265	ENSG00000204165	CXorf65	-	chromosome X open reading frame 65	protein-coding
100924	chr17	64468951	64469050	+	0	NA	TTS (NM_001291316)	TTS (NM_001291316)	19885	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
193943	chr6	31662051	31662930	+	0	NA	exon (NM_033177, exon 3 of 3)	exon (NM_033177, exon 3 of 3)	-1712	NM_021184	57827		NM_021184	ENSG00000204439	C6orf47	D6S53E|G4|NG34	chromosome 6 open reading frame 47	protein-coding
166248	chr3	112302771	112303000	+	0	NA	intron (NR_147411, intron 1 of 4)	HERV3-int|LTR|ERV1	407	NR_147411	105374042		NR_147411	ENSG00000239482	LOC105374042	-	uncharacterized LOC105374042	ncRNA
171047	chr3	195254521	195254980	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	-6830	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
59442	chr13	25881151	25881650	+	0	NA	intron (NM_016529, intron 33 of 36)	intron (NM_016529, intron 33 of 36)	170616	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
148380	chr20	63894271	63895900	+	0	NA	promoter-TSS (NM_025219)	promoter-TSS (NM_025219)	-41	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
147814	chr20	62692601	62692800	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-16136	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
16736	chr1	155260021	155260780	+	0	NA	exon (NM_005698, exon 4 of 9)	exon (NM_005698, exon 4 of 9)	1960	NM_052837	10067		NM_005698	ENSG00000116521	SCAMP3	C1orf3	secretory carrier membrane protein 3	protein-coding
102195	chr17	75169851	75170500	+	0	NA	intron (NM_001005849, intron 2 of 2)	AluSq2|SINE|Alu	12784	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
177451	chr4	113494571	113494730	+	0	NA	intron (NM_172129, intron 15 of 17)	L1PA2|LINE|L1	201811	NM_001354279	287		NM_001148	ENSG00000145362	ANK2	ANK-2|CFAP87|FAP87|LQT4|brank-2	ankyrin 2	protein-coding
20574	chr1	198735651	198735950	+	0	NA	intron (NM_002838, intron 23 of 32)	L1MB7|LINE|L1	96760	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
92224	chr17	7883501	7884400	+	0	NA	promoter-TSS (NM_001005271)	promoter-TSS (NM_001005271)	-846	NM_001005271	1107		NM_001272	ENSG00000170004	CHD3	Mi-2a|Mi2-ALPHA|SNIBCPS|ZFH	chromodomain helicase DNA binding protein 3	protein-coding
67439	chr14	70654521	70656300	+	0	NA	intron (NM_015351, intron 1 of 2)	AluSx|SINE|Alu	13494	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
129458	chr2	69566521	69566930	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-46554	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
111391	chr19	3748801	3749000	+	0	NA	intron (NM_001267560, intron 19 of 20)	AluSx|SINE|Alu	12792	NM_004886	9546		NM_004886	ENSG00000011132	APBA3	MGC:15815|X11L2|mint3	amyloid beta precursor protein binding family A member 3	protein-coding
151311	chr21	45550371	45551010	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	-8250	NM_001205206	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
73118	chr15	41229151	41229950	+	0	NA	intron (NM_001385036, intron 1 of 10)	AluSp|SINE|Alu	1207	NM_001286441	161829		NM_152596	ENSG00000178997	EXD1	EXDL1	exonuclease 3'-5' domain containing 1	protein-coding
14412	chr1	144307001	144307380	+	0	NA	Intergenic	L2b|LINE|L2	-4649	NR_136328	101927429		NR_136328		KMT2CP1	-	lysine methyltransferase 2C pseudogene 1	pseudo
53788	chr12	68845771	68845930	+	0	NA	TTS (NM_001367990)	TTS (NM_001367990)	36826	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
27815	chr10	37988121	37988780	+	0	NA	Intergenic	AluSx|SINE|Alu	-11803	NM_001329657	219749		NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
213925	chr7	142607601	142607800	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-58599	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
60294	chr13	40633871	40634030	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	32691	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
152856	chr22	22235601	22235830	+	0	NA	Intergenic	LTR71B|LTR|ERV1	-9071	NM_001303509	7441		NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	V-set pre-B cell surrogate light chain 1	protein-coding
149579	chr21	33246971	33247780	+	0	NA	intron (NM_001385055, intron 5 of 9)	AluSz|SINE|Alu	17437	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
185629	chr5	131517401	131517600	+	0	NA	intron (NM_016340, intron 7 of 27)	intron (NM_016340, intron 7 of 27)	117729	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
32878	chr10	110137051	110137600	+	0	NA	Intergenic	Intergenic	14655	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
6840	chr1	31036501	31037280	+	0	NA	intron (NM_014676, intron 2 of 21)	intron (NM_014676, intron 2 of 21)	28827	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
94687	chr17	30645851	30646750	+	0	NA	Intergenic	Intergenic	21982	NR_033420	6459		NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2	pseudo
198722	chr6	108188251	108188350	+	0	NA	3' UTR (NM_003269, exon 9 of 9)	3' UTR (NM_003269, exon 9 of 9)	20277	NM_001286102	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
72720	chr15	38674221	38674850	+	0	NA	Intergenic	Intergenic	-22063	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
109857	chr19	1227271	1227950	+	0	NA	TTS (NM_152769)	TTS (NM_152769)	10395	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
34054	chr10	124743161	124744830	+	0	NA	intron (NM_014661, intron 1 of 4)	CpG	383	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
170594	chr3	186917821	186918080	+	0	NA	Intergenic	Intergenic	-12576	NM_173217	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
223147	chr8	143518721	143519350	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	-12787	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
13203	chr1	112634551	112634850	+	0	NA	intron (NM_006135, intron 1 of 9)	MIRb|SINE|MIR	14868	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
67727	chr14	73503401	73504030	+	0	NA	intron (NM_203309, intron 9 of 16)	intron (NM_203309, intron 9 of 16)	12782	NM_024644	79697		NM_024644	ENSG00000170468	RIOX1	C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66	ribosomal oxygenase 1	protein-coding
34542	chr10	132964801	132965030	+	0	NA	promoter-TSS (NR_046231)	promoter-TSS (NR_046231)	374	NR_120627	101927590		NR_120626	ENSG00000232903	LINC01166	-	long intergenic non-protein coding RNA 1166	ncRNA
48197	chr12	8045851	8046650	+	0	NA	intron (NM_018416, intron 6 of 10)	intron (NM_018416, intron 6 of 10)	13534	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
32171	chr10	101567671	101567980	+	0	NA	Intergenic	Intergenic	20432	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
63709	chr14	21194071	21194430	+	0	NA	Intergenic	L1ME3|LINE|L1	11253	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
205102	chr7	6825551	6826650	+	0	NA	exon (NM_198097, exon 1 of 15)	exon (NM_198097, exon 1 of 15)	175	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
179217	chr4	173509171	173509850	+	0	NA	intron (NM_001329597, intron 1 of 3)	CpG	9634	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
43060	chr11	74398101	74399230	+	0	NA	promoter-TSS (NR_039710)	promoter-TSS (NR_039710)	-232	NM_173582	283209		NM_173582	ENSG00000165434	PGM2L1	BM32A|NEDHFS|PMMLP	phosphoglucomutase 2 like 1	protein-coding
182919	chr5	70532521	70532880	+	0	NA	intron (NR_033968, intron 1 of 3).4	AluY|SINE|Alu	22623	NR_033968	100049076		NR_033968		GUSBP17	GUSBP9	GUSB pseudogene 17	pseudo
143563	chr20	31617471	31617630	+	0	NA	Intergenic	L2|LINE|L2	10364	NR_036161	100422904		NR_036161	ENSG00000264395	MIR3193	-	microRNA 3193	ncRNA
197433	chr6	73653801	73655450	+	0	NA	promoter-TSS (NM_012434)	promoter-TSS (NM_012434)	-633	NM_001382634	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
166537	chr3	114855821	114856080	+	0	NA	intron (NM_015642, intron 3 of 9)	intron (NM_015642, intron 3 of 9)	-17083	NR_126422	104413890		NR_126422	ENSG00000239946	ZBTB20-AS3	-	ZBTB20 antisense RNA 3	ncRNA
195261	chr6	36438471	36438630	+	0	NA	intron (NM_152990, intron 2 of 4)	AluY|SINE|Alu	-4217	NM_001286580	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
230577	chr9	128551881	128553470	+	0	NA	promoter-TSS (NM_003127)	promoter-TSS (NM_003127)	88	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
100579	chr17	63295871	63296030	+	0	NA	intron (NM_025185, intron 8 of 25)	intron (NM_025185, intron 8 of 25)	144317	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
30954	chr10	87798301	87798500	+	0	NA	intron (NR_135914, intron 2 of 10)	intron (NR_135914, intron 2 of 10)	19831	NM_001321968	84896		NM_032810	ENSG00000138138	ATAD1	AFDC1|FNP001|HKPX4|Msp1|THORASE|hATAD1	ATPase family AAA domain containing 1	protein-coding
123997	chr19	55452951	55453550	+	0	NA	3' UTR (NM_001136201, exon 6 of 6)	3' UTR (NM_001136201, exon 6 of 6)	8392	NM_001136201	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
55942	chr12	109967601	109969050	+	0	NA	intron (NM_139201, intron 7 of 14)	L1M5|LINE|L1	28043	NM_014776	9815		NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
140857	chr2	237434021	237434280	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-19943	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
20713	chr1	200816551	200816980	+	0	NA	intron (NM_203459, intron 4 of 16)	intron (NM_203459, intron 4 of 16)	-56216	NM_005298	2848		NM_005298	ENSG00000170128	GPR25	-	G protein-coupled receptor 25	protein-coding
144359	chr20	35062571	35062930	+	0	NA	intron (NM_199368, intron 3 of 18)	L1MB8|LINE|L1	30057	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
171796	chr4	496321	496780	+	0	NA	intron (NM_133474, intron 1 of 2)	PRIMA4-int|LTR|ERV1	2606	NM_133474	170960		NM_133474	ENSG00000182903	ZNF721	-	zinc finger protein 721	protein-coding
43095	chr11	74846851	74846950	+	0	NA	intron (NM_001378161, intron 13 of 16)	L1M4|LINE|L1	98051	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
176263	chr4	87005151	87008530	+	0	NA	promoter-TSS (NM_005935)	promoter-TSS (NM_005935)	-148	NM_001313959	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
7775	chr1	36187771	36188600	+	0	NA	Intergenic	Intergenic	32025	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
99459	chr17	50145551	50145650	+	0	NA	intron (NM_032595, intron 1 of 9)	intron (NM_032595, intron 1 of 9)	5077	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
117670	chr19	24054551	24054850	+	0	NA	intron (NM_001278677, intron 3 of 5)	BSR/Beta|Satellite|Satellite	21251	NM_001278663	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
80142	chr16	2087001	2087200	+	0	NA	intron (NM_001370404, intron 37 of 40)	intron (NM_001370404, intron 37 of 40)	3184	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
56880	chr12	120297921	120298430	+	0	NA	intron (NM_001385735, intron 1 of 3)	AluSp|SINE|Alu	-4146	NM_001385734	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
95725	chr17	38572721	38574300	+	0	NA	intron (NM_025248, intron 2 of 18)	intron (NM_025248, intron 2 of 18)	32442	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
217176	chr8	26304351	26305500	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	11709	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
45666	chr11	119024551	119024850	+	0	NA	TTS (NM_001318488)	TTS (NM_001318488)	4780	NM_001164280	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
141212	chr2	239378971	239379130	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	21970	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
179030	chr4	165204071	165204600	+	0	NA	Intergenic	Intergenic	-3226	NM_007246	11275		NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
180915	chr5	34245701	34246080	+	0	NA	Intergenic	MER110|LTR|ERV1	-1166	NR_146599	114899		NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and TNF related 3	protein-coding
199186	chr6	111770351	111771400	+	0	NA	intron (NM_002037, intron 3 of 13)	MSTB2|LTR|ERVL-MaLR	-10958	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
48029	chr12	6950221	6950520	+	0	NA	promoter-TSS (NM_080549)	promoter-TSS (NM_080549)	-901	NM_080549	5777		NM_002831	ENSG00000111679	PTPN6	HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1	protein tyrosine phosphatase non-receptor type 6	protein-coding
2054	chr1	7898901	7899300	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	41739	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
68483	chr14	88006171	88006950	+	0	NA	intron (NM_003608, intron 1 of 1)	intron (NM_003608, intron 1 of 1)	1425	NM_003608	8477		NM_003608	ENSG00000140030	GPR65	TDAG8|hTDAG8	G protein-coupled receptor 65	protein-coding
102575	chr17	75872371	75873450	+	0	NA	Intergenic	Intergenic	5671	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
141983	chr20	1387751	1388050	+	0	NA	intron (NM_000801, intron 2 of 4)	L1MC4|LINE|L1	5061	NR_106929	102465524		NR_106929	ENSG00000284436	MIR6869	hsa-mir-6869	microRNA 6869	ncRNA
230320	chr9	127968901	127969180	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	11949	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
125813	chr2	24078371	24078780	+	0	NA	intron (NM_001206802, intron 3 of 3)	MER34D|LTR|ERV1	1742	NM_001291328	375190		NM_198553	ENSG00000219626	FAM228B	-	family with sequence similarity 228 member B	protein-coding
12165	chr1	100349901	100350430	+	0	NA	intron (NM_001319211, intron 1 of 14)	AluSx|SINE|Alu	-2302	NM_033313	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
122484	chr19	49559501	49559700	+	0	NA	intron (NM_001270960, intron 3 of 8)	intron (NM_001270960, intron 3 of 8)	20956	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
86251	chr16	58306321	58306600	+	0	NA	Intergenic	AluSx|SINE|Alu	-11413	NM_001080492	221191		NM_001080492	ENSG00000103023	PRSS54	CT67|KLKBL4	serine protease 54	protein-coding
183493	chr5	79275951	79276050	+	0	NA	intron (NM_152405, intron 1 of 10)	intron (NM_152405, intron 1 of 10)	39869	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
31537	chr10	96902151	96902450	+	0	NA	intron (NM_032440, intron 2 of 7)	intron (NM_032440, intron 2 of 7)	69355	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
171768	chr4	28551	29330	+	0	NA	Intergenic	Intergenic	-24345	NM_001286054	152687		NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding
104820	chr17	81810471	81810630	+	0	NA	intron (NM_000160, intron 3 of 13)	intron (NM_000160, intron 3 of 13)	6400	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
81645	chr16	10940651	10941080	+	0	NA	intron (NM_014015, intron 1 of 1)	intron (NM_014015, intron 1 of 1)	1603	NM_014015	28955		NM_014015	ENSG00000182108	DEXI	MYLE	Dexi homolog	protein-coding
1328	chr1	2418801	2419400	+	0	NA	Intergenic	Intergenic	-5273	NM_001374427	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
148282	chr20	63700501	63700900	+	0	NA	exon (NM_001134758, exon 7 of 7)	exon (NM_001134758, exon 7 of 7)	4048	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
219256	chr8	67316651	67316750	+	0	NA	intron (NM_006421, intron 1 of 38)	AluJb|SINE|Alu	27081	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
95917	chr17	38911201	38911880	+	0	NA	intron (NM_006148, intron 4 of 6)	intron (NM_006148, intron 4 of 6)	-3439	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
121808	chr19	47924701	47925100	+	0	NA	Intergenic	AluSx1|SINE|Alu	1121	NR_024227	100169957		NR_024227		SNAR-A6	-	small NF90 (ILF3) associated RNA A6	snRNA
12190	chr1	100375851	100376400	+	0	NA	intron (NM_001319210, intron 2 of 16)	L1PA5|LINE|L1	23619	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
9549	chr1	51534671	51535350	+	0	NA	Intergenic	Intergenic	-15744	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
145455	chr20	43658801	43659230	+	0	NA	Intergenic	AluJb|SINE|Alu	-8004	NM_001278610	4605		NM_002466	ENSG00000101057	MYBL2	B-MYB|BMYB	MYB proto-oncogene like 2	protein-coding
148913	chr21	9042821	9043800	+	0	NA	Intergenic	TAR1|Satellite|telo	55693	NR_162105	113218501		NR_162105		MIR10396A	-	microRNA 10396a	ncRNA
144053	chr20	33665021	33665500	+	0	NA	intron (NM_031232, intron 5 of 11)	AluY|SINE|Alu	-1683	NM_001024675	170487		NM_001024675	ENSG00000288649	ACTL10	C20orf134|dJ63M2.2	actin like 10	protein-coding
102462	chr17	75717901	75718100	+	0	NA	Intergenic	Intergenic	-3459	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
128461	chr2	55623701	55624180	+	0	NA	Intergenic	HAL1|LINE|L1	-6318	NM_001282850	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
3723	chr1	16620971	16621780	+	0	NA	intron (NR_026752, intron 5 of 6)	intron (NR_026752, intron 5 of 6)	-7811	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
47105	chr12	666621	667390	+	0	NA	Intergenic	Intergenic	-3560	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
158002	chr22	49870151	49871350	+	0	NA	intron (NM_014838, intron 1 of 1)	L1PA16|LINE|L1	16906	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
220406	chr8	100261521	100261780	+	0	NA	exon (NM_001280539, exon 9 of 11)	exon (NM_001280539, exon 9 of 11)	40543	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
8032	chr1	38048871	38049130	+	0	NA	intron (NR_168386, intron 1 of 4)	MIR3|SINE|MIR	1866	NR_168387	105378653		NR_168386		MIR3659HG	-	MIR3659 host gene	ncRNA
46042	chr11	122689771	122689930	+	0	NA	intron (NM_032873, intron 1 of 13)	MER21A|LTR|ERVL	34128	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
205474	chr7	17307871	17308580	+	0	NA	intron (NM_001621, intron 1 of 10)	intron (NM_001621, intron 1 of 10)	9573	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
225585	chr9	36126751	36127180	+	0	NA	Intergenic	Intergenic	-9571	NR_104638	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
67915	chr14	74616401	74616600	+	0	NA	Intergenic	(ACC)n|Simple_repeat|Simple_repeat	-4263	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
46554	chr11	128484351	128484550	+	0	NA	intron (NM_001162422, intron 1 of 3)	intron (NM_001162422, intron 1 of 3)	37860	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
235862	chrX	50691771	50692080	+	0	NA	intron (NR_027121, intron 2 of 9)	intron (NR_027121, intron 2 of 9)	122119	NM_020717	57477		NM_020717	ENSG00000158352	SHROOM4	MRXSSDS|SHAP|shrm4	shroom family member 4	protein-coding
47498	chr12	3999401	3999830	+	0	NA	Intergenic	Intergenic	-126167	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
196928	chr6	52400721	52400980	+	0	NA	intron (NM_133367, intron 1 of 1)	L2c|LINE|L2	-19492	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
163223	chr3	50254901	50256350	+	0	NA	intron (NM_002070, intron 4 of 8)	intron (NM_002070, intron 4 of 8)	8715	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
154612	chr22	36303371	36303530	+	0	NA	intron (NM_002473, intron 19 of 40)	intron (NM_002473, intron 19 of 40)	-16543	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
19682	chr1	181014401	181014800	+	0	NA	intron (NM_005819, intron 1 of 7)	intron (NM_005819, intron 1 of 7)	8270	NM_005819	10228		NM_005819	ENSG00000135823	STX6	-	syntaxin 6	protein-coding
114692	chr19	13120701	13121100	+	0	NA	intron (NM_052876, intron 1 of 5)	intron (NM_052876, intron 1 of 5)	2636	NM_052876	112939		NM_052876	ENSG00000160877	NACC1	BEND8|BTBD14B|BTBD30|NAC-1|NAC1|NECFM	nucleus accumbens associated 1	protein-coding
173749	chr4	16222901	16223500	+	0	NA	intron (NM_153365, intron 1 of 13)	intron (NM_153365, intron 1 of 13)	3271	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
163347	chr3	50432601	50432900	+	0	NA	intron (NM_006030, intron 3 of 37)	intron (NM_006030, intron 3 of 37)	67387	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
132874	chr2	111127601	111127800	+	0	NA	intron (NM_138626, intron 2 of 2)	intron (NM_138626, intron 2 of 2)	6786	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
7246	chr1	32347571	32348300	+	0	NA	Intergenic	AluSz|SINE|Alu	-11702	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
128790	chr2	62304651	62305400	+	0	NA	Intergenic	Intergenic	89504	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
217149	chr8	26045271	26045880	+	0	NA	promoter-TSS (NM_022659)	promoter-TSS (NM_022659)	-162	NM_022659	64641		NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	EBF transcription factor 2	protein-coding
86948	chr16	68114321	68114780	+	0	NA	intron (NM_173165, intron 1 of 9)	Cheshire|DNA|hAT-Charlie	29180	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
105426	chr17	82871651	82871750	+	0	NA	intron (NM_005993, intron 14 of 38)	CpG	-31678	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
130453	chr2	85436171	85436330	+	0	NA	intron (NM_201594, intron 19 of 20)	intron (NM_201594, intron 19 of 20)	17319	NM_201594								
129514	chr2	69645901	69647280	+	0	NA	intron (NM_001320698, intron 1 of 14)	MER49|LTR|ERV1	2782	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
336	chr1	997271	997430	+	0	NA	Intergenic	Intergenic	2747	NM_021170	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
120297	chr19	43468701	43469600	+	0	NA	Intergenic	Intergenic	-3542	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
17524	chr1	156772221	156772700	+	0	NA	intron (NM_005973, intron 1 of 6)	intron (NM_005973, intron 1 of 6)	4925	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
168409	chr3	142269571	142270100	+	0	NA	Intergenic	L1MB5|LINE|L1	-44250	NM_001039547	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
13726	chr1	116802801	116803000	+	0	NA	Intergenic	AluSq|SINE|Alu	48470	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
216759	chr8	22474021	22474480	+	0	NA	intron (NM_005605, intron 1 of 13)	intron (NM_005605, intron 1 of 13)	33172	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
87579	chr16	72832571	72832750	+	0	NA	intron (NM_006885, intron 4 of 9)	intron (NM_006885, intron 4 of 9)	-167690	NR_159372	101927957		NR_126330	ENSG00000261008	LINC01572	-	long intergenic non-protein coding RNA 1572	ncRNA
77006	chr15	78453671	78453830	+	0	NA	intron (NM_001320942, intron 2 of 21)	L2c|LINE|L2	15329	NM_001320942	3658		NM_004136	ENSG00000136381	IREB2	ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA	iron responsive element binding protein 2	protein-coding
190190	chr5	178207751	178207850	+	0	NA	TTS (NR_103510)	TTS (NR_103510)	3267	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
136348	chr2	176066601	176067000	+	0	NA	Intergenic	Intergenic	17162	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
237478	chrX	119787571	119787880	+	0	NA	promoter-TSS (NR_002584)	promoter-TSS (NR_002584)	-241	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
221238	chr8	122244671	122244950	+	0	NA	Intergenic	L1PA2|LINE|L1	323834	NR_131202	105375734		NR_131202		SMILR	-	smooth muscle induced lncRNA, enhancer of proliferation	ncRNA
66407	chr14	61509851	61510250	+	0	NA	intron (NM_006255, intron 10 of 13)	L2c|LINE|L2	60144	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
109678	chr19	1030051	1031950	+	0	NA	intron (NM_201277, intron 1 of 5)	intron (NM_201277, intron 1 of 5)	4392	NM_001303501	1265		NM_004368	ENSG00000064666	CNN2	-	calponin 2	protein-coding
163841	chr3	52478451	52478750	+	0	NA	intron (NM_001276294, intron 11 of 13)	intron (NM_001276294, intron 11 of 13)	-16738	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
232826	chr9	136732971	136733130	+	0	NA	Intergenic	Intergenic	-4866	NR_024543	84973		NM_032887	ENSG00000233016	SNHG7	NCRNA00061	small nucleolar RNA host gene 7	ncRNA
217092	chr8	24367251	24367550	+	0	NA	intron (NR_125808, intron 3 of 5)	intron (NR_125808, intron 3 of 5)	-16885	NM_014479	27299		NM_014479	ENSG00000134028	ADAMDEC1	M12.219	ADAM like decysin 1	protein-coding
57863	chr12	123362021	123362950	+	0	NA	intron (NM_018183, intron 1 of 31)	AluSz|SINE|Alu	2358	NR_107039	102466877		NR_107039	ENSG00000284425	MIR8072	hsa-mir-8072	microRNA 8072	ncRNA
97740	chr17	44386871	44387350	+	0	NA	intron (NM_000419, intron 1 of 29)	LTR16A|LTR|ERVL	2539	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
112244	chr19	5730701	5731100	+	0	NA	intron (NM_152784, intron 4 of 21)	AluYc|SINE|Alu	10263	NM_152784	257062		NM_152784	ENSG00000174898	CATSPERD	TMEM146	cation channel sperm associated auxiliary subunit delta	protein-coding
43325	chr11	76380201	76381750	+	0	NA	promoter-TSS (NR_130898)	promoter-TSS (NR_130898)	-10	NR_130898	5612		NM_004705	ENSG00000137492	THAP12	DAP4|P52rIPK|PRKRIR|THAP0	THAP domain containing 12	protein-coding
49793	chr12	31955371	31956080	+	0	NA	Intergenic	MER92D|LTR|ERV1	-3690	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
100546	chr17	62549101	62549500	+	0	NA	intron (NM_001375269, intron 6 of 20)	AluY|SINE|Alu	68187	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
187856	chr5	147782121	147783050	+	0	NA	5' UTR (NM_001270941, exon 1 of 22)	5' UTR (NM_001270941, exon 1 of 22)	143	NM_001282282	9832		NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
43473	chr11	78191051	78191350	+	0	NA	intron (NM_020798, intron 1 of 10)	intron (NM_020798, intron 1 of 10)	2281	NM_020798	57558		NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
101643	chr17	68249001	68250350	+	0	NA	intron (NM_001346474, intron 2 of 7)	AluJr4|SINE|Alu	1632	NM_016627	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
159829	chr3	16468231	16468930	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	45119	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
238644	chrX	153977921	153978180	+	0	NA	intron (NM_003492, intron 1 of 1)	AluSg4|SINE|Alu	-3047	NR_036174	100422987		NR_036174	ENSG00000265176	MIR3202-1	mir-3202-1	microRNA 3202-1	ncRNA
95652	chr17	38065451	38065750	+	0	NA	exon (NM_001369499, exon 3 of 13).5	exon (NM_001369499, exon 3 of 13).5	2994	NM_001291465	101060389		NM_001123390	ENSG00000274419	TBC1D3D	PRC17|TBC1D3|TBC1D3A|TBC1D3H	TBC1 domain family member 3D	protein-coding
4619	chr1	22101751	22102050	+	0	NA	TTS (NM_001039802)	TTS (NM_001039802)	41197	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
72131	chr15	28987101	28987300	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	-8327	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
86771	chr16	67702301	67702500	+	0	NA	intron (NM_001243650, intron 1 of 1)	AluSz|SINE|Alu	16916	NR_027398	81577		NM_030819	ENSG00000141098	GFOD2	-	Gfo/Idh/MocA-like oxidoreductase domain containing 2	protein-coding
50765	chr12	49026271	49026630	+	0	NA	exon (NM_003482, exon 49 of 55)	exon (NM_003482, exon 49 of 55)	-7674	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
23050	chr1	226616921	226617580	+	0	NA	Intergenic	Intergenic	57818	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
107775	chr18	51039071	51039950	+	0	NA	intron (NM_005359, intron 1 of 11)	MLT1K|LTR|ERVL-MaLR	9297	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
212047	chr7	114963471	114963830	+	0	NA	intron (NM_199072, intron 3 of 4)	AluJr|SINE|Alu	41496	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
189448	chr5	172987451	172987750	+	0	NA	intron (NM_003945, intron 1 of 3)	intron (NM_003945, intron 1 of 3)	3829	NM_003945	8992		NM_003945	ENSG00000113732	ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase H+ transporting V0 subunit e1	protein-coding
210225	chr7	99331801	99332200	+	0	NA	intron (NM_001190996, intron 1 of 9)	L1MC5a|LINE|L1	6102	NM_006409	10552		NM_006409	ENSG00000241685	ARPC1A	Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L	actin related protein 2/3 complex subunit 1A	protein-coding
146994	chr20	53402401	53402860	+	0	NA	intron (NM_173485, intron 2 of 2)	L2a|LINE|L2	-150140	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
98225	chr17	46150471	46150630	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	42232	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
126610	chr2	28790801	28791000	+	0	NA	intron (NM_206876, intron 7 of 8)	L1MC5a|LINE|L1	-19934	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
226116	chr9	62909451	62909550	+	0	NA	Intergenic	MER52A|LTR|ERV1	-11413	NR_122076	403323		NM_203449		LERFS	-	lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting	ncRNA
181473	chr5	42735071	42735350	+	0	NA	Intergenic	L1PA2|LINE|L1	-21608	NM_001134848	100129792		NM_001134848	ENSG00000198865	CCDC152	CH5400	coiled-coil domain containing 152	protein-coding
198895	chr6	109516901	109517180	+	0	NA	intron (NM_001145128, intron 29 of 40)	L1PBb|LINE|L1	-33803	NM_001164313	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
140678	chr2	234100601	234101400	+	0	NA	Intergenic	L2a|LINE|L2	50298	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
50790	chr12	49050171	49050430	+	0	NA	exon (NM_003482, exon 12 of 55)	exon (NM_003482, exon 12 of 55)	10494	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
238743	chrX	154321171	154321780	+	0	NA	intron (NM_001145933, intron 8 of 12)	intron (NM_001145933, intron 8 of 12)	16305	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
101744	chr17	69581351	69581730	+	0	NA	Intergenic	Intergenic	-12447	NR_109972	101928122		NR_109971	ENSG00000227517	LINC01483	-	long intergenic non-protein coding RNA 1483	ncRNA
149546	chr21	33071301	33072200	+	0	NA	3' UTR (NM_138983, exon 1 of 1)	3' UTR (NM_138983, exon 1 of 1)	1609	NM_138983	116448		NM_138983	ENSG00000184221	OLIG1	BHLHB6|BHLHE21	oligodendrocyte transcription factor 1	protein-coding
56133	chr12	111036171	111036330	+	0	NA	intron (NM_015267, intron 1 of 21)	intron (NM_015267, intron 1 of 21)	2085	NM_015267	23316		NM_015267	ENSG00000111249	CUX2	CDP2|CUTL2|DEE67|EIEE67	cut like homeobox 2	protein-coding
72838	chr15	40135921	40136700	+	0	NA	Intergenic	Intergenic	-24759	NM_001211	701		NM_001211	ENSG00000156970	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
73358	chr15	42272651	42274360	+	0	NA	promoter-TSS (NM_001301409)	promoter-TSS (NM_001301409)	-72	NM_015497	25963		NM_015497	ENSG00000103978	TMEM87A	ELKIN1	transmembrane protein 87A	protein-coding
22798	chr1	224465621	224465880	+	0	NA	intron (NM_001322302, intron 2 of 6)	AluSq2|SINE|Alu	30901	NR_136293	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
220094	chr8	94399871	94400030	+	0	NA	intron (NM_012415, intron 7 of 14)	MLT1A|LTR|ERVL-MaLR	36994	NM_001205263	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
25656	chr10	8335151	8335450	+	0	NA	Intergenic	MIRb|SINE|MIR	-66995	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
157919	chr22	49778251	49778350	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	46031	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
117999	chr19	33819951	33820800	+	0	NA	Intergenic	CpG	23505	NM_001129994	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
227888	chr9	93951851	93952350	+	0	NA	3' UTR (NM_021570, exon 4 of 4)	3' UTR (NM_021570, exon 4 of 4)	3255	NM_021570	56033		NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
37694	chr11	28106971	28107500	+	0	NA	intron (NM_031217, intron 1 of 16)	intron (NM_031217, intron 1 of 16)	921	NM_031217	81930		NM_031217	ENSG00000121621	KIF18A	MS-KIF18A|PPP1R99	kinesin family member 18A	protein-coding
154966	chr22	37273571	37274350	+	0	NA	Intergenic	Intergenic	-8548	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
5973	chr1	26924951	26925730	+	0	NA	intron (NM_006600, intron 2 of 8)	AluYe5|SINE|Alu	3597	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
14533	chr1	144858721	144859080	+	0	NA	intron (NR_104189, intron 2 of 3).2	(AGCC)n|Simple_repeat|Simple_repeat	140729	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
166316	chr3	112734671	112735430	+	0	NA	Intergenic	Intergenic	-2039	NR_162092	113218483		NR_162092		MIR9900	-	microRNA 9900	ncRNA
8009	chr1	38008121	38008380	+	0	NA	Intergenic	AluY|SINE|Alu	-2736	NM_001243878	2275		NM_004468	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
175085	chr4	54102771	54103130	+	0	NA	TTS (NM_133267)	TTS (NM_133267)	2787	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
69665	chr14	98014401	98014600	+	0	NA	Intergenic	AluSx3|SINE|Alu	-36376	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
226634	chr9	73869251	73869570	+	0	NA	Intergenic	Intergenic	-502121	NR_121182	101927358		NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
174483	chr4	39932351	39932450	+	0	NA	intron (NM_001100399, intron 2 of 32)	intron (NM_001100399, intron 2 of 32)	45511	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
212229	chr7	120996271	120996850	+	0	NA	intron (NM_001105533, intron 1 of 17)	intron (NM_001105533, intron 1 of 17)	7169	NM_001105533	79974		NM_024913	ENSG00000106034	CPED1	C7orf58	cadherin like and PC-esterase domain containing 1	protein-coding
140351	chr2	232636821	232637300	+	0	NA	intron (NM_025202, intron 1 of 3)	MLT1C|LTR|ERVL-MaLR	3456	NM_025202	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
173776	chr4	17549171	17550080	+	0	NA	Intergenic	AluY|SINE|Alu	-27573	NM_015907	51056		NM_015907	ENSG00000002549	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
28676	chr10	60663451	60663950	+	0	NA	intron (NM_001204403, intron 1 of 43)	MIRc|SINE|MIR	69828	NM_001204403	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
208627	chr7	72973871	72974830	+	0	NA	Intergenic	MIRb|SINE|MIR	4668	NR_104007	100101148		NR_104007		FKBP6P1	-	FKBP6 pseudogene 1	pseudo
89030	chr16	88383021	88383300	+	0	NA	5' UTR (NM_001367624, exon 1 of 3)	5' UTR (NM_001367624, exon 1 of 3)	201	NM_001367624	84627		NM_001127464	ENSG00000225614	ZNF469	BCS|BCS1|Zfp469	zinc finger protein 469	protein-coding
146129	chr20	48630571	48630930	+	0	NA	exon (NM_020820, exon 36 of 40)	exon (NM_020820, exon 36 of 40)	197249	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138629	chr2	210171201	210172250	+	0	NA	promoter-TSS (NM_152519)	promoter-TSS (NM_152519)	-316	NM_152519	151050		NM_152519	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1 like	protein-coding
90704	chr17	1771471	1771830	+	0	NA	promoter-TSS (NM_001329905)	promoter-TSS (NM_001329905)	-21	NM_001329905	5176		NM_002615	ENSG00000132386	SERPINF1	EPC-1|OI12|OI6|PEDF|PIG35	serpin family F member 1	protein-coding
93299	chr17	18152821	18153080	+	0	NA	intron (NM_016239, intron 41 of 64)	L2b|LINE|L2	-30878	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
64268	chr14	23306601	23307330	+	0	NA	intron (NM_001199839, intron 1 of 3)	intron (NM_001199839, intron 1 of 3)	105	NM_001199839	599		NM_004050	ENSG00000129473	BCL2L2	BCL-W|BCL2-L-2|BCLW|PPP1R51	BCL2 like 2	protein-coding
160923	chr3	36864321	36864780	+	0	NA	intron (NM_014831, intron 8 of 22)	MLT1H|LTR|ERVL-MaLR	-42050	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
117124	chr19	19214921	19215400	+	0	NA	intron (NM_004386, intron 1 of 14)	intron (NM_004386, intron 1 of 14)	3202	NM_004386	1463		NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
69690	chr14	98167651	98168450	+	0	NA	Intergenic	Intergenic	-189926	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
121977	chr19	48495551	48495650	+	0	NA	intron (NM_001080434, intron 12 of 15)	intron (NM_001080434, intron 12 of 15)	17589	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
216931	chr8	22744771	22745350	+	0	NA	intron (NM_001363233, intron 4 of 6)	intron (NM_001363233, intron 4 of 6)	-51580	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
128338	chr2	54722271	54722430	+	0	NA	Intergenic	AluSx|SINE|Alu	-2662	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133538	chr2	120255301	120255500	+	0	NA	intron (NM_002881, intron 1 of 4)	intron (NM_002881, intron 1 of 4)	2548	NM_001369400	5899		NM_002881	ENSG00000144118	RALB	-	RAS like proto-oncogene B	protein-coding
193457	chr6	30507051	30507350	+	0	NA	Intergenic	AluJb|SINE|Alu	-9066	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
150350	chr21	42162451	42162550	+	0	NA	Intergenic	Intergenic	-37189	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
114918	chr19	13956001	13956600	+	0	NA	intron (NM_138353, intron 5 of 12)	intron (NM_138353, intron 5 of 12)	-2908	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
154998	chr22	37313401	37314000	+	0	NA	3' UTR (NM_013385, exon 13 of 13)	3' UTR (NM_013385, exon 13 of 13)	31192	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
118058	chr19	34274751	34275050	+	0	NA	intron (NM_014686, intron 1 of 13)	intron (NM_014686, intron 1 of 13)	20346	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
15489	chr1	150386671	150386830	+	0	NA	intron (NM_015203, intron 1 of 10)	Tigger2b_Pri|DNA|TcMar-Tigger	22639	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
6063	chr1	27143951	27144050	+	0	NA	intron (NM_003047, intron 1 of 11)	HAL1ME|LINE|L1	11125	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
11481	chr1	90718551	90719180	+	0	NA	Intergenic	CpG-1314	-1563	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
214070	chr7	143396751	143397050	+	0	NA	intron (NM_005232, intron 10 of 17)	intron (NM_005232, intron 10 of 17)	-10913	NR_033897	285965		NR_033897	ENSG00000229153	EPHA1-AS1	-	EPHA1 antisense RNA 1	ncRNA
104571	chr17	81365301	81366680	+	0	NA	Intergenic	Intergenic	19135	NR_164138	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
73196	chr15	41510901	41512250	+	0	NA	exon (NM_002344, exon 6 of 20)	exon (NM_002344, exon 6 of 20)	2252	NM_002344	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
7727	chr1	36122701	36122900	+	0	NA	intron (NM_001294347, intron 1 of 3)	L2c|LINE|L2	2422	NM_005202	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
48399	chr12	9649601	9649880	+	0	NA	intron (NR_046444, intron 1 of 4)	MER61A|LTR|ERV1	1693	NR_002814	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
8499	chr1	40855601	40856080	+	0	NA	Intergenic	L2b|LINE|L2	6523	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
183215	chr5	76257321	76257980	+	0	NA	intron (NM_014979, intron 4 of 12)	(TG)n|Simple_repeat|Simple_repeat	-145635	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
109351	chr19	618871	619300	+	0	NA	exon (NM_005035, exon 15 of 21)	exon (NM_005035, exon 15 of 21)	14452	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
131727	chr2	98134271	98134430	+	0	NA	intron (NM_144992, intron 7 of 27)	intron (NM_144992, intron 7 of 27)	-15183	NM_001345864	200403		NM_144992	ENSG00000168658	VWA3B	SCAR22	von Willebrand factor A domain containing 3B	protein-coding
84417	chr16	30366771	30366930	+	0	NA	intron (NM_015527, intron 1 of 8)	MIR|SINE|MIR	3644	NM_015527	26000		NM_015527	ENSG00000169221	TBC1D10B	EPI64B|FP2461	TBC1 domain family member 10B	protein-coding
201729	chr6	149792671	149792830	+	0	NA	intron (NM_001360452, intron 4 of 7)	AluJb|SINE|Alu	43009	NM_001360456	5110		NM_005389	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
71577	chr14	106468901	106469330	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-13324	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
98672	chr17	47845951	47846050	+	0	NA	3' UTR (NM_001258248, exon 2 of 2)	3' UTR (NM_001258248, exon 2 of 2)	-4727	NM_138355	90507		NM_138355	ENSG00000141295	SCRN2	Ses2	secernin 2	protein-coding
226733	chr9	75889951	75891800	+	0	NA	non-coding (NR_120409, exon 1 of 20)	non-coding (NR_120409, exon 1 of 20)	202	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
41876	chr11	67240801	67242530	+	0	NA	intron (NM_001256405, intron 1 of 9)	intron (NM_001256405, intron 1 of 9)	1651	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
229530	chr9	122827721	122829080	+	0	NA	intron (NM_005388, intron 1 of 3)	CpG	188	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
44841	chr11	114080101	114080830	+	0	NA	intron (NM_001354751, intron 2 of 6)	(CT)n|Simple_repeat|Simple_repeat	17254	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
147302	chr20	57672251	57672350	+	0	NA	intron (NM_199171, intron 1 of 3)	CpG	18386	NM_001255976	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
176686	chr4	100848901	100849100	+	0	NA	Intergenic	Intergenic	-173887	NR_046811	100874275		NR_046811	ENSG00000250223	LINC01216	EMCN-IT3	long intergenic non-protein coding RNA 1216	ncRNA
26564	chr10	21717571	21717730	+	0	NA	intron (NR_136736, intron 17 of 25)	(TCC)n|Simple_repeat|Simple_repeat	183418	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
4937	chr1	23957301	23957880	+	0	NA	Intergenic	MIRb|SINE|MIR	-2238	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
62182	chr13	97436051	97436800	+	0	NA	intron (NM_021033, intron 1 of 1)	intron (NM_021033, intron 1 of 1)	2256	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
120122	chr19	42192971	42193500	+	0	NA	Intergenic	AluY|SINE|Alu	24442	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
61586	chr13	72780151	72780250	+	0	NA	intron (NM_001322348, intron 1 of 19)	AluSg|SINE|Alu	1700	NM_001322349	22894		NM_014953	ENSG00000083520	DIS3	2810028N01Rik|EXOSC11|KIAA1008|RRP44|dis3p	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding
44148	chr11	96178221	96178480	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-163088	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
39018	chr11	47747421	47747680	+	0	NA	intron (NM_015308, intron 6 of 16)	AluSx|SINE|Alu	19791	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
197843	chr6	88761421	88761990	+	0	NA	intron (NM_001286428, intron 11 of 13)	MER58A|DNA|hAT-Charlie	201913	NM_003800	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
178649	chr4	152408551	152408950	+	0	NA	intron (NM_033632, intron 2 of 11)	MIRb|SINE|MIR	-26221	NM_001013415	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
237795	chrX	129842951	129844350	+	0	NA	promoter-TSS (NM_001008222)	promoter-TSS (NM_001008222)	-51	NM_001008222	51114		NM_016032	ENSG00000188706	ZDHHC9	CGI89|CXorf11|DHHC9|MMSA1|MRXSR|MRXSZ|ZDHHC10|ZNF379|ZNF380	zinc finger DHHC-type palmitoyltransferase 9	protein-coding
17216	chr1	156271351	156271650	+	0	NA	intron (NM_001323616, intron 8 of 22)	intron (NM_001323616, intron 8 of 22)	11325	NM_015327	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
150801	chr21	43921271	43923000	+	0	NA	intron (NM_001369880, intron 1 of 8)	intron (NM_001369880, intron 1 of 8)	-3263	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
16413	chr1	154479701	154480230	+	0	NA	non-coding (NR_135169, exon 6 of 6)	non-coding (NR_135169, exon 6 of 6)	-22254	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
52662	chr12	56331871	56332030	+	0	NA	intron (NM_001166279, intron 2 of 25)	AluSc8|SINE|Alu	1768	NM_001127460	9924		NM_014871	ENSG00000135473	PAN2	USP52	poly(A) specific ribonuclease subunit PAN2	protein-coding
143914	chr20	32616421	32616880	+	0	NA	Intergenic	L2a|LINE|L2	29171	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
163368	chr3	50477271	50477630	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	26184	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
70750	chr14	103397101	103397630	+	0	NA	intron (NM_002376, intron 1 of 15)	AluSx4|SINE|Alu	11950	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
2985	chr1	12010371	12011050	+	0	NA	intron (NM_014874, intron 18 of 18)	MIRb|SINE|MIR	-8788	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
123690	chr19	55013451	55013750	+	0	NA	TTS (NM_001256017).2	TTS (NM_001256017).2	24664	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
173572	chr4	10111321	10112330	+	0	NA	intron (NM_017491, intron 2 of 14)	Charlie10|DNA|hAT-Charlie	4974	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
184962	chr5	113294001	113295430	+	0	NA	5' UTR (NM_002387, exon 1 of 17)	5' UTR (NM_002387, exon 1 of 17)	223	NM_002387	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
53398	chr12	64699471	64700000	+	0	NA	Intergenic	AluSz6|SINE|Alu	59671	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
223196	chr8	143575751	143577030	+	0	NA	intron (NM_001363145, intron 7 of 11).2	intron (NM_001363145, intron 7 of 11).2	1940	NM_145201	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
188494	chr5	154811571	154812650	+	0	NA	intron (NM_015315, intron 18 of 18)	intron (NM_015315, intron 18 of 18)	-17348	NR_039667	100616306		NR_039667	ENSG00000263361	MIR378H	-	microRNA 378h	ncRNA
155638	chr22	38954071	38954830	+	0	NA	Intergenic	Intergenic	-3072	NM_001193289	100913187		NM_001193289		APOBEC3A_B	A3A|APOBEC3A	APOBEC3A and APOBEC3B deletion hybrid	protein-coding
212172	chr7	116914171	116914530	+	0	NA	intron (NM_006136, intron 8 of 9)	intron (NM_006136, intron 8 of 9)	-39151	NM_001369607	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
135006	chr2	153477851	153477950	+	0	NA	3' UTR (NM_019845, exon 1 of 1)	3' UTR (NM_019845, exon 1 of 1)	862	NM_019845	56475		NM_019845	ENSG00000177519	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator homolog	protein-coding
42946	chr11	73578801	73579130	+	0	NA	intron (NM_015159, intron 1 of 7)	MLT1A0|LTR|ERVL-MaLR	19147	NM_001286050	23201		NM_015159	ENSG00000054965	FAM168A	KIAA0280|TCRP1	family with sequence similarity 168 member A	protein-coding
65999	chr14	58237201	58237480	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-7465	NR_038123	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
61991	chr13	80342621	80343480	+	0	NA	Intergenic	CpG	-1924	NM_005842	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
21356	chr1	204808151	204808330	+	0	NA	Intergenic	Intergenic	-20412	NM_001378329	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
146272	chr20	49053271	49053430	+	0	NA	intron (NM_001362762, intron 1 of 24)	AluSq2|SINE|Alu	7038	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
121124	chr19	46009501	46010130	+	0	NA	intron (NM_001267723, intron 5 of 13)	(TG)n|Simple_repeat|Simple_repeat	-9117	NR_030412	768217		NR_030412	ENSG00000211580	MIR769	MIRN769|hsa-mir-769|mir-769	microRNA 769	ncRNA
136861	chr2	186589551	186590480	+	0	NA	promoter-TSS (NM_002210)	promoter-TSS (NM_002210)	-41	NM_001145000	3685		NM_002210	ENSG00000138448	ITGAV	CD51|MSK8|VNRA|VTNR	integrin subunit alpha V	protein-coding
140800	chr2	236176571	236176750	+	0	NA	Intergenic	Intergenic	-8274	NM_001485	2637		NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
117977	chr19	33375771	33375930	+	0	NA	intron (NM_001252296, intron 1 of 1)	intron (NM_001252296, intron 1 of 1)	1326	NM_001252296	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
96764	chr17	41728051	41728550	+	0	NA	exon (NM_001367462, exon 7 of 10)	exon (NM_001367462, exon 7 of 10)	6343	NM_001367462	9001		NM_003949	ENSG00000173805	HAP1	HAP2|HIP5|HLP|hHLP1	huntingtin associated protein 1	protein-coding
115164	chr19	14421071	14421450	+	0	NA	Intergenic	AluJr|SINE|Alu	-1877	NR_046366	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
173465	chr4	8580551	8580750	+	0	NA	non-coding (NR_045511, exon 1 of 3)	non-coding (NR_045511, exon 1 of 3)	258	NM_080819	27201		NM_080819	ENSG00000155269	GPR78	-	G protein-coupled receptor 78	protein-coding
136605	chr2	178482471	178483030	+	0	NA	intron (NM_019091, intron 1 of 7)	intron (NM_019091, intron 1 of 7)	2293	NM_019091	65977		NM_019091	ENSG00000116095	PLEKHA3	FAPP1	pleckstrin homology domain containing A3	protein-coding
36645	chr11	7694271	7694980	+	0	NA	intron (NM_198185, intron 12 of 14)	AluSq|SINE|Alu	11852	NM_001367963	341277		NM_198185	ENSG00000183378	OVCH2	OVTN	ovochymase 2	protein-coding
148105	chr20	63361021	63362150	+	0	NA	promoter-TSS (NM_000744)	promoter-TSS (NM_000744)	-236	NR_046317	1137		NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	cholinergic receptor nicotinic alpha 4 subunit	protein-coding
86537	chr16	67175271	67176380	+	0	NA	TTS (NM_001276307)	TTS (NM_001276307)	1972	NM_001276311	8996		NM_003946	ENSG00000140939	NOL3	ARC|FCM|MYOCL1|MYP|NOP|NOP30	nucleolar protein 3	protein-coding
161349	chr3	40327401	40327850	+	0	NA	Intergenic	Intergenic	17918	NM_005875	10289		NM_005875	ENSG00000114784	EIF1B	GC20	eukaryotic translation initiation factor 1B	protein-coding
105315	chr17	82554301	82554930	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	34883	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
20504	chr1	198660401	198661050	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	21685	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
32924	chr10	110225371	110226200	+	0	NA	promoter-TSS (NM_005962)	promoter-TSS (NM_005962)	-211	NM_005962	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
107498	chr18	47901351	47902530	+	0	NA	intron (NM_001135937, intron 1 of 9)	L1MEg2|LINE|L1	28719	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
171747	chr3	198100701	198101100	+	0	NA	Intergenic	Intergenic	-20229	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
169934	chr3	179015151	179015980	+	0	NA	Intergenic	Intergenic	53777	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
168224	chr3	141302971	141304600	+	0	NA	Intergenic	Intergenic	-20401	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
157852	chr22	48627271	48627430	+	0	NA	intron (NM_015381, intron 1 of 3)	intron (NM_015381, intron 1 of 3)	51010	NM_015381	25817		NM_015381	ENSG00000219438	TAFA5	FAM19A5|QLLK5208|TAFA-5|UNQ5208	TAFA chemokine like family member 5	protein-coding
120279	chr19	43434321	43434700	+	0	NA	Intergenic	L1ME4b|LINE|L1	19620	NM_001130011	83639		NM_031451	ENSG00000131126	TEX101	CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP	testis expressed 101	protein-coding
61782	chr13	75296171	75296330	+	0	NA	intron (NM_014832, intron 17 of 20)	intron (NM_014832, intron 17 of 20)	55662	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
136955	chr2	190378101	190378550	+	0	NA	Intergenic	L1MB3|LINE|L1	-29251	NM_001375989	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
79674	chr16	1244771	1245630	+	0	NA	Intergenic	Intergenic	4495	NM_003294	7177		NM_003294	ENSG00000172236	TPSAB1	TPS1|TPS2|TPSB1|TPSB2|Tryptase-2	tryptase alpha/beta 1	protein-coding
123946	chr19	55387801	55388400	+	0	NA	promoter-TSS (NR_106863)	promoter-TSS (NR_106863)	-81	NR_106863	102465483		NR_106863	ENSG00000284029	MIR6805	hsa-mir-6805	microRNA 6805	ncRNA
194145	chr6	32022251	32022430	+	0	NA	intron (NM_001242823, intron 9 of 40).6	HERVKC4-int|LTR|ERVK	7545	NM_001002029	721		NM_001002029	ENSG00000224389	C4B	C4B1|C4B12|C4B2|C4B3|C4B5|C4BD|C4B_2|C4F|CH|CO4|CPAMD3	complement C4B (Chido/Rodgers blood group)	protein-coding
109800	chr19	1154771	1155150	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	19308	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
31251	chr10	91963301	91963530	+	0	NA	intron (NR_165096, intron 12 of 36)	AluYh3|SINE|Alu	39645	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
59185	chr13	22062961	22063880	+	0	NA	Intergenic	MIR|SINE|MIR	-146865	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
35259	chr11	861151	861450	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	16854	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
182780	chr5	68405871	68406030	+	0	NA	Intergenic	Intergenic	113373	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
79715	chr16	1315021	1315680	+	0	NA	intron (NM_194259, intron 4 of 7)	intron (NM_194259, intron 4 of 7)	5714	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
180103	chr5	1174101	1174680	+	0	NA	intron (NR_109911, intron 4 of 4)	intron (NR_109911, intron 4 of 4)	4215	NR_109911	101928857		NR_109911	ENSG00000249201	TERLR1	CTD-3080P12.3	TERT regulating lncRNA 1	ncRNA
91352	chr17	4505451	4505750	+	0	NA	intron (NM_001124758, intron 1 of 12)	intron (NM_001124758, intron 1 of 12)	6719	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
150665	chr21	43432521	43432780	+	0	NA	Intergenic	Intergenic	-5519	NM_001320643	102724428		NM_001320643	ENSG00000275993	LOC102724428	SIK|SIK-1|SIK1|SIK1B|SNF1LK	salt inducible kinase 1B (putative)	protein-coding
55440	chr12	104566151	104566730	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-25193	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
98909	chr17	48598951	48599400	+	0	NA	intron (NM_001369397, intron 1 of 2)	intron (NM_001369397, intron 1 of 2)	3217	NR_033205	404266		NR_033201	ENSG00000233101	HOXB-AS3	-	HOXB cluster antisense RNA 3	ncRNA
176328	chr4	88007271	88008500	+	0	NA	exon (NM_000297, exon 1 of 15)	exon (NM_000297, exon 1 of 15)	250	NM_000297	5311		NM_000297	ENSG00000118762	PKD2	APKD2|PC2|PKD4|Pc-2|TRPP2	polycystin 2, transient receptor potential cation channel	protein-coding
169078	chr3	153628571	153629100	+	0	NA	intron (NR_146713, intron 3 of 6)	intron (NR_146713, intron 3 of 6)	133691	NR_146713	105374165		NR_146713		LINC02006	-	long intergenic non-protein coding RNA 2006	ncRNA
48691	chr12	10595871	10596450	+	0	NA	intron (NR_028045, intron 3 of 6)	intron (NR_028045, intron 3 of 6)	3675	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
115505	chr19	15415651	15415950	+	0	NA	intron (NM_014371, intron 1 of 13)	AluY|SINE|Alu	3188	NM_014371	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
32677	chr10	103913551	103914930	+	0	NA	intron (NM_024928, intron 2 of 9)	intron (NM_024928, intron 2 of 9)	3944	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
94888	chr17	31537821	31538530	+	0	NA	TTS (NM_001346747)	TTS (NM_001346747)	3292	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
13522	chr1	114777071	114777230	+	0	NA	intron (NM_025073, intron 3 of 4)	L1PA6|LINE|L1	3535	NR_049742	80143		NM_025073	ENSG00000052723	SIKE1	SIKE	suppressor of IKBKE 1	protein-coding
217238	chr8	26661651	26662050	+	0	NA	Intergenic	Intergenic	83445	NM_001244604	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
186295	chr5	134563101	134563830	+	0	NA	intron (NM_001289985, intron 7 of 11)	intron (NM_001289985, intron 7 of 11)	37357	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
196551	chr6	44067001	44067200	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	7552	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
49438	chr12	24803671	24804030	+	0	NA	Intergenic	Intergenic	98372	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
234417	chrX	16800101	16800300	+	0	NA	intron (NM_001168683, intron 1 of 7)	AluSx1|SINE|Alu	13734	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
221149	chr8	119642721	119642980	+	0	NA	intron (NM_001330600, intron 1 of 25)	intron (NM_001330600, intron 1 of 25)	-4011	NM_006209	5168		NM_006209	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
104419	chr17	81065101	81065900	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	7766	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
161043	chr3	38007051	38007830	+	0	NA	TTS (NM_001370265)	TTS (NM_001370265)	13302	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
110486	chr19	2033701	2034150	+	0	NA	Intergenic	Intergenic	17319	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
152580	chr22	21151051	21151150	+	0	NA	Intergenic	Intergenic	-16765	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
122275	chr19	49063301	49064430	+	0	NA	promoter-TSS (NM_006179)	promoter-TSS (NM_006179)	2	NM_006179	4909		NM_006179	ENSG00000225950	NTF4	GLC10|GLC1O|NT-4|NT-4/5|NT-5|NT4|NT5|NTF5	neurotrophin 4	protein-coding
84650	chr16	30724471	30725150	+	0	NA	exon (NM_006662, exon 25 of 34)	exon (NM_006662, exon 25 of 34)	14273	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
38279	chr11	43283001	43283280	+	0	NA	Intergenic	Intergenic	-13771	NR_033868	399881		NR_033868	ENSG00000293312	HNRNPKP3	-	heterogeneous nuclear ribonucleoprotein K pseudogene 3	pseudo
107466	chr18	46919701	46920550	+	0	NA	promoter-TSS (NM_001324060)	promoter-TSS (NM_001324060)	20	NM_001324060	9063		NM_004671	ENSG00000078043	PIAS2	ARIP3|DIP|MIZ1|PIASX|SIZ2|ZMIZ4	protein inhibitor of activated STAT 2	protein-coding
92598	chr17	9554721	9554980	+	0	NA	intron (NM_004853, intron 3 of 7)	AluSx|SINE|Alu	20970	NM_004853	9482		NM_004853	ENSG00000170310	STX8	CARB	syntaxin 8	protein-coding
142581	chr20	5537501	5538100	+	0	NA	Intergenic	L1MC5a|LINE|L1	-27798	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
94181	chr17	28546821	28547200	+	0	NA	3' UTR (NM_001330166, exon 6 of 6)	3' UTR (NM_001330166, exon 6 of 6)	5614	NM_001330166	9094		NM_005148	ENSG00000109103	UNC119	CORD24|HRG4|IMD13|POC7|POC7A	unc-119 lipid binding chaperone	protein-coding
100742	chr17	63931021	63931620	+	0	NA	intron (NM_001039933, intron 2 of 5)	intron (NM_001039933, intron 2 of 5)	1011	NM_021602	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
139160	chr2	219173101	219173700	+	0	NA	exon (NM_015680, exon 7 of 8)	exon (NM_015680, exon 7 of 8)	-3371	NM_001144890	151295		NM_144712	ENSG00000213901	SLC23A3	E2BP3|SVCT3|Yspl1	solute carrier family 23 member 3	protein-coding
3929	chr1	17437271	17439100	+	0	NA	intron (NM_018715, intron 2 of 12).2	CpG	351	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
30230	chr10	74967851	74969280	+	0	NA	intron (NM_001370135, intron 4 of 9).2	intron (NM_001370135, intron 4 of 9).2	-53168	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
221092	chr8	117512821	117513080	+	0	NA	Intergenic	Intergenic	-7763	NM_001282986	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
175553	chr4	75512121	75513280	+	0	NA	intron (NM_001278538, intron 1 of 8)	L2-3_Crp|LINE|L2	1730	NM_001278539	25898		NM_015436	ENSG00000163743	RCHY1	ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363	ring finger and CHY zinc finger domain containing 1	protein-coding
15814	chr1	151296801	151297200	+	0	NA	intron (NM_001369628, intron 9 of 12)	AluSx|SINE|Alu	14701	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
87320	chr16	70250321	70252550	+	0	NA	TTS (NM_001605)	TTS (NM_001605)	505	NM_058219	118460		NM_058219	ENSG00000223496	EXOSC6	EAP4|MTR3|Mtr3p|hMtr3p|p11	exosome component 6	protein-coding
152669	chr22	21589471	21589630	+	0	NA	intron (NR_046082, intron 1 of 3)	intron (NR_046082, intron 1 of 3)	21836	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
79927	chr16	1736801	1737100	+	0	NA	intron (NM_015133, intron 4 of 31)	intron (NM_015133, intron 4 of 31)	1965	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
60467	chr13	41122551	41123250	+	0	NA	Intergenic	Intergenic	9902	NM_152903	89890		NM_152903	ENSG00000165572	KBTBD6	-	kelch repeat and BTB domain containing 6	protein-coding
212404	chr7	128124801	128125330	+	0	NA	Intergenic	L1ME3G|LINE|L1	43204	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
222451	chr8	138936351	138936450	+	0	NA	Intergenic	Intergenic	-22359	NM_152888	169044		NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
208452	chr7	66931751	66932050	+	0	NA	intron (NM_017994, intron 1 of 6)	AluY|SINE|Alu	10675	NM_017994	55069		NM_017994	ENSG00000106609	TMEM248	C7orf42	transmembrane protein 248	protein-coding
163396	chr3	50515471	50516150	+	0	NA	Intergenic	Intergenic	-11566	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
15037	chr1	148370001	148370200	+	0	NA	Intergenic	AluSg7|SINE|Alu	-7567	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
8235	chr1	39701551	39702080	+	0	NA	Intergenic	Intergenic	-10330	NM_001282397	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
8383	chr1	40380271	40380430	+	0	NA	intron (NM_001198978, intron 1 of 9)	intron (NM_001198978, intron 1 of 9)	5717	NM_001198978	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
53156	chr12	57933821	57934280	+	0	NA	intron (NR_038269, intron 2 of 2)	L1PA14|LINE|L1	2114	NR_038269	100506844		NR_038269	ENSG00000257698	GIHCG	-	GIHCG inhibitor of miR-200b/200a/429 expression	ncRNA
218818	chr8	59110251	59111230	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	8407	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
21405	chr1	205291651	205292550	+	0	NA	Intergenic	Intergenic	29645	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
166425	chr3	113744921	113745700	+	0	NA	intron (NM_025146, intron 1 of 4)	AmnSINE1|SINE|5S-Deu-L2	939	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
21891	chr1	207806901	207808180	+	0	NA	intron (NR_135299, intron 4 of 5)	intron (NR_135299, intron 4 of 5)	-5017	NR_029518	407025		NR_029518	ENSG00000284203	MIR29B2	MIRN29B2	microRNA 29b-2	ncRNA
25899	chr10	11280421	11281150	+	0	NA	intron (NM_001326330, intron 8 of 12)	intron (NM_001326330, intron 8 of 12)	63889	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
71731	chr15	20430571	20430730	+	0	NA	TTS (NR_036443)	TTS (NR_036443)	9837	NR_036443	440248		NM_199045	ENSG00000291082	HERC2P9	-	HERC2 pseudogene 9	pseudo
75739	chr15	68280051	68280350	+	0	NA	intron (NM_015322, intron 1 of 1)	intron (NM_015322, intron 1 of 1)	2455	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
22433	chr1	220269371	220269880	+	0	NA	intron (NM_012414, intron 1 of 34)	AluSx4|SINE|Alu	-1910	NR_001587	6791		NR_001587		AURKAP1	AURKAPS1|AurAps1|STK6P	aurora kinase A pseudogene 1	pseudo
80218	chr16	2175271	2175630	+	0	NA	intron (NM_032271, intron 16 of 20)	intron (NM_032271, intron 16 of 20)	19668	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
68444	chr14	81519071	81519800	+	0	NA	intron (NM_005065, intron 3 of 20)	intron (NM_005065, intron 3 of 20)	14418	NM_005065	6400		NM_005065	ENSG00000071537	SEL1L	Hrd3|PRO1063|SEL1-LIKE|SEL1L1	SEL1L adaptor subunit of SYVN1 ubiquitin ligase	protein-coding
223168	chr8	143542871	143543030	+	0	NA	Intergenic	L1MB3|LINE|L1	-1503	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
205285	chr7	10465071	10465880	+	0	NA	intron (NR_147499, intron 2 of 2)	SVA_F|Retroposon|SVA	-237201	NR_149037	100131472		NR_149037		LOC100131472	-	uncharacterized LOC100131472	ncRNA
75568	chr15	67062051	67062450	+	0	NA	intron (NR_135686, intron 1 of 5)	intron (NR_135686, intron 1 of 5)	1932	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
21198	chr1	203862771	203862930	+	0	NA	intron (NM_001304464, intron 2 of 4)	intron (NM_001304464, intron 2 of 4)	1003	NM_001328638	6635		NM_003094	ENSG00000182004	SNRPE	HYPT11|SME|Sm-E|snRNP-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
56705	chr12	120092271	120092430	+	0	NA	intron (NR_147893, intron 10 of 10)	intron (NR_147893, intron 10 of 10)	24403	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
121999	chr19	48575821	48576150	+	0	NA	exon (NM_004605, exon 1 of 6)	exon (NM_004605, exon 1 of 6)	249	NM_004605	6820		NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
211888	chr7	111113571	111113730	+	0	NA	intron (NM_001099658, intron 2 of 2)	intron (NM_001099658, intron 2 of 2)	22523	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
149742	chr21	34417471	34418030	+	0	NA	TTS (NM_001367348).2	TTS (NM_001367348).2	6201	NM_001367348	388820		NM_001367348	ENSG00000243627	SMIM34	SMIM34A	small integral membrane protein 34	protein-coding
106101	chr18	9156851	9157650	+	0	NA	intron (NM_001204056, intron 1 of 11)	Tigger5b|DNA|TcMar-Tigger	19687	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
33692	chr10	120690271	120690630	+	0	NA	Intergenic	L2c|LINE|L2	92501	NR_103717	404216		NM_001012711	ENSG00000177234	LINC01561	C10orf85	long intergenic non-protein coding RNA 1561	ncRNA
193622	chr6	30763671	30764230	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-2875	NR_138037	105375013		NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20	ncRNA
6995	chr1	31834571	31834730	+	0	NA	Intergenic	Intergenic	-18599	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
234591	chrX	19788801	19789200	+	0	NA	intron (NM_001353892, intron 2 of 17)	AluSg|SINE|Alu	10773	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
148564	chr20	64280371	64280530	+	0	NA	Intergenic	Intergenic	-9935	NR_040415	107126285		NR_040415		SEPTIN14P20	C20orf69|LINC00266-1|NCRNA00266|NCRNA00266-1|RBRP|SEPT14P20|bA476I15.3	septin 14 pseudogene 20	pseudo
27540	chr10	32325871	32326450	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	20998	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
32368	chr10	102397521	102398030	+	0	NA	intron (NM_001288724, intron 8 of 22)	MIRb|SINE|MIR	2070	NM_001261403	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
109214	chr19	473571	474250	+	0	NA	intron (NM_001385599, intron 2 of 4)	MIR3|SINE|MIR	1073	NM_001385597	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
18822	chr1	167658001	167658200	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	27868	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
119490	chr19	40461171	40461530	+	0	NA	intron (NM_000713, intron 1 of 4)	L2c|LINE|L2	4395	NM_000713	645		NM_000713	ENSG00000090013	BLVRB	BVRB|FLR|HEL-S-10|SDR43U1	biliverdin reductase B	protein-coding
11765	chr1	92367401	92367800	+	0	NA	intron (NM_024813, intron 11 of 12)	intron (NM_024813, intron 11 of 12)	68541	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
159410	chr3	13484871	13485880	+	0	NA	intron (NM_001330636, intron 3 of 6)	intron (NM_001330636, intron 3 of 6)	5069	NM_001136041	79885		NM_024827	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
18993	chr1	169371221	169371800	+	0	NA	intron (NM_001320973, intron 2 of 6)	intron (NM_001320973, intron 2 of 6)	3315	NM_001320973	8548		NM_003666	ENSG00000117475	BLZF1	GOLGIN-45|JEM-1|JEM-1s|JEM1	basic leucine zipper nuclear factor 1	protein-coding
54606	chr12	92552751	92552850	+	0	NA	Intergenic	Intergenic	86121	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
189838	chr5	177095301	177095650	+	0	NA	intron (NM_022963, intron 10 of 15)	intron (NM_022963, intron 10 of 15)	5925	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
123979	chr19	55434271	55434850	+	0	NA	intron (NM_001145176, intron 3 of 3)	(GT)n|Simple_repeat|Simple_repeat	8303	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
5779	chr1	26529371	26530430	+	0	NA	5' UTR (NM_002953, exon 1 of 22)	5' UTR (NM_002953, exon 1 of 22)	139	NM_002953	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
169162	chr3	156606571	156607080	+	0	NA	Intergenic	L1MB2|LINE|L1	-51625	NM_001308197	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
201538	chr6	149168901	149169750	+	0	NA	Intergenic	MER74A|LTR|ERVL	-48599	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
191459	chr6	10758951	10759650	+	0	NA	3' UTR (NM_001286489, exon 5 of 5)	3' UTR (NM_001286489, exon 5 of 5)	11495	NM_030969	81853		NM_030969	ENSG00000137210	TMEM14B	-	transmembrane protein 14B	protein-coding
230599	chr9	128588871	128589230	+	0	NA	intron (NM_001375310, intron 21 of 57)	intron (NM_001375310, intron 21 of 57)	36463	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
4986	chr1	24277501	24278030	+	0	NA	Intergenic	MIR|SINE|MIR	-41592	NM_198174	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
100597	chr17	63441951	63442050	+	0	NA	intron (NM_001915, intron 1 of 5)	intron (NM_001915, intron 1 of 5)	-1173	NM_001017917	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
126917	chr2	32629371	32629530	+	0	NA	intron (NM_017735, intron 1 of 19)	AluY|SINE|Alu	1400	NM_017735	55622		NM_017735	ENSG00000018699	TTC27	-	tetratricopeptide repeat domain 27	protein-coding
39634	chr11	61516271	61517330	+	0	NA	3' UTR (NM_001300773, exon 10 of 10)	3' UTR (NM_001300773, exon 10 of 10)	8051	NM_001145077	390205		NM_001145077	ENSG00000204950	LRRC10B	-	leucine rich repeat containing 10B	protein-coding
239283	chrY	13754851	13755150	+	0	NA	Intergenic	Intergenic	51101	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
117808	chr19	29943901	29944180	+	0	NA	intron (NR_045557, intron 1 of 9)	AluJr|SINE|Alu	1801	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
120246	chr19	42400271	42400730	+	0	NA	intron (NR_073180, intron 1 of 2)	L2b|LINE|L2	3352	NR_073180	100996307		NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
40835	chr11	65013471	65015150	+	0	NA	intron (NM_001199745, intron 1 of 3)	CpG	150	NM_001667	402		NM_001667	ENSG00000213465	ARL2	ARFL2|MRCS1	ADP ribosylation factor like GTPase 2	protein-coding
11790	chr1	92532251	92532700	+	0	NA	intron (NM_001377213, intron 20 of 20)	L1PA7|LINE|L1	-45550	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
179854	chr5	525421	526130	+	0	NA	Intergenic	L2a|LINE|L2	-1326	NM_004174	6550		NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
215039	chr7	152462371	152462530	+	0	NA	Intergenic	Intergenic	-1674	NR_027387	100128822		NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
161376	chr3	41002121	41002380	+	0	NA	Intergenic	Intergenic	-197255	NM_001330729	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
225359	chr9	34668301	34669300	+	0	NA	Intergenic	MER4A|LTR|ERV1	-2744	NM_001320037	730098		NM_001320037	ENSG00000187186	LOC730098	-	uncharacterized LOC730098	protein-coding
41366	chr11	65976021	65976680	+	0	NA	intron (NM_005146, intron 12 of 19)	intron (NM_005146, intron 12 of 19)	14616	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
73013	chr15	40753571	40754500	+	0	NA	intron (NM_018145, intron 2 of 12)	intron (NM_018145, intron 2 of 12)	1219	NM_018145	55177		NM_018145	ENSG00000137824	RMDN3	FAM82A2|FAM82C|RMD-3|RMD3|ptpip51	regulator of microtubule dynamics 3	protein-coding
149411	chr21	31184221	31184950	+	0	NA	intron (NM_001353694, intron 14 of 27)	intron (NM_001353694, intron 14 of 27)	-23645	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
206063	chr7	27163651	27163950	+	0	NA	exon (NM_152739, exon 2 of 2)	exon (NM_152739, exon 2 of 2)	1737	NM_152739	3205		NM_002142	ENSG00000078399	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding
63217	chr13	113846101	113847030	+	0	NA	exon (NM_000820, exon 4 of 15)	exon (NM_000820, exon 4 of 15)	17511	NM_000820	2621		NM_000820	ENSG00000183087	GAS6	AXLLG|AXSF	growth arrest specific 6	protein-coding
119761	chr19	41290721	41291180	+	0	NA	intron (NM_144732, intron 7 of 14)	AluSp|SINE|Alu	-19222	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
223072	chr8	143400001	143400200	+	0	NA	Intergenic	Intergenic	-17579	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
16849	chr1	155700551	155700850	+	0	NA	intron (NM_033657, intron 1 of 12)	SVA_F|Retroposon|SVA	11606	NM_033657	7818		NM_004632	ENSG00000132676	DAP3	DAP-3|MRP-S29|MRPS29|S29mt|bMRP-10|mS29	death associated protein 3	protein-coding
129963	chr2	73970021	73971830	+	0	NA	intron (NR_104030, intron 1 of 1)	intron (NR_104030, intron 1 of 1)	10514	NR_104030	100874048		NR_104029		DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
157780	chr22	46754271	46754700	+	0	NA	Intergenic	Intergenic	-8132	NM_001284303	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
38759	chr11	47157601	47158200	+	0	NA	exon (NM_001278222, exon 6 of 8)	exon (NM_001278222, exon 6 of 8)	18979	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
192141	chr6	16770621	16771600	+	0	NA	Intergenic	Intergenic	-9620	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
140214	chr2	231714901	231716300	+	0	NA	Intergenic	Intergenic	2286	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
47733	chr12	6473151	6473780	+	0	NA	Intergenic	AluY|SINE|Alu	-2788	NM_014231	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
8853	chr1	43367501	43368730	+	0	NA	promoter-TSS (NM_022821)	promoter-TSS (NM_022821)	-41	NM_001256401	64834		NM_022821	ENSG00000066322	ELOVL1	CGI-88|IKSHD|Ssc1	ELOVL fatty acid elongase 1	protein-coding
83468	chr16	27367131	27368800	+	0	NA	Intergenic	MIR|SINE|MIR	-34209	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
53028	chr12	57592901	57593680	+	0	NA	intron (NM_001146258, intron 1 of 10)	intron (NM_001146258, intron 1 of 10)	2098	NM_001146258	79837		NM_024779	ENSG00000166908	PIP4K2C	PIP5K2C	phosphatidylinositol-5-phosphate 4-kinase type 2 gamma	protein-coding
184134	chr5	94700401	94700930	+	0	NA	Intergenic	L1MA6|LINE|L1	81996	NM_032290	84250		NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding
44212	chr11	96309621	96309880	+	0	NA	intron (NM_032427, intron 1 of 4)	AluJb|SINE|Alu	-31688	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
9074	chr1	44838471	44838630	+	0	NA	intron (NM_001166292, intron 2 of 22)	intron (NM_001166292, intron 2 of 22)	4394	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
149597	chr21	33318821	33319080	+	0	NA	Intergenic	AluSp|SINE|Alu	-5445	NM_001384504	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
83100	chr16	22450551	22451300	+	0	NA	intron (NR_027154, intron 1 of 28)	intron (NR_027154, intron 1 of 28)	-13210	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
139019	chr2	218391851	218391950	+	0	NA	intron (NM_000578, intron 11 of 14)	AluSx1|SINE|Alu	-6333	NM_001206878	58190		NM_021198	ENSG00000144579	CTDSP1	NIF3|NLI-IF|NLIIF|SCP1	CTD small phosphatase 1	protein-coding
209017	chr7	74362451	74362550	+	0	NA	intron (NM_032421, intron 7 of 15)	intron (NM_032421, intron 7 of 15)	73093	NM_003388	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
163431	chr3	50576371	50576930	+	0	NA	intron (NM_001377426, intron 4 of 10)	AluSx1|SINE|Alu	-5623	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
3345	chr1	15444371	15444780	+	0	NA	intron (NM_007272, intron 5 of 7)	intron (NM_007272, intron 5 of 7)	6132	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
182852	chr5	69515271	69515580	+	0	NA	intron (NM_001205254, intron 4 of 8)	SVA_D|Retroposon|SVA	11248	NM_001205255	100506658		NM_002538	ENSG00000197822	OCLN	BLCPMG|PPP1R115|PTORCH1	occludin	protein-coding
133729	chr2	127386701	127389180	+	0	NA	promoter-TSS (NM_001371910)	promoter-TSS (NM_001371910)	35	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
203727	chr7	1117001	1117400	+	0	NA	intron (NM_001350970, intron 2 of 2)	CpG	21047	NM_001318252	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
115932	chr19	16626751	16627250	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	1204	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
147781	chr20	62571421	62572080	+	0	NA	TTS (NM_001302812)	TTS (NM_001302812)	6838	NR_029676	406923		NR_029676	ENSG00000284508	MIR133A2	MIRN133A2|mir-133a-2	microRNA 133a-2	ncRNA
178676	chr4	152515101	152515300	+	0	NA	intron (NM_001349798, intron 2 of 13)	A-rich|Low_complexity|Low_complexity	19833	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
212096	chr7	116138151	116138480	+	0	NA	Intergenic	Intergenic	-72224	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
237822	chrX	129981701	129982930	+	0	NA	promoter-TSS (NM_021946)	promoter-TSS (NM_021946)	-320	NM_001379450	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
100411	chr17	60524701	60524980	+	0	NA	intron (NM_006380, intron 1 of 12)	intron (NM_006380, intron 1 of 12)	1400	NM_001282476	10513		NM_006380	ENSG00000062725	APPBP2	APP-BP2|HS.84084|PAT1	amyloid beta precursor protein binding protein 2	protein-coding
174158	chr4	36255301	36256000	+	0	NA	promoter-TSS (NR_122080)	promoter-TSS (NR_122080)	-868	NR_122080	439933		NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
184616	chr5	106423651	106423750	+	0	NA	Intergenic	LTR2752|LTR|ERV1	587314	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
142306	chr20	3408601	3409580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1428	NM_001009984	25943		NM_001009984	ENSG00000088854	DNAAF9	C20orf194	dynein axonemal assembly factor 9	protein-coding
71120	chr14	104932301	104932500	+	0	NA	intron (NM_001308174, intron 10 of 10)	CpG-7772	7521	NM_001308174	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
187669	chr5	143213751	143214130	+	0	NA	intron (NR_146198, intron 21 of 22)	intron (NR_146198, intron 21 of 22)	21440	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
233643	chrX	728951	729350	+	0	NA	Intergenic	Intergenic	104806	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
144585	chr20	35789051	35789350	+	0	NA	intron (NM_016436, intron 1 of 17)	AluSx|SINE|Alu	17185	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
135494	chr2	161946351	161946750	+	0	NA	intron (NM_001178016, intron 16 of 26)	intron (NM_001178016, intron 16 of 26)	127665	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
198526	chr6	106530771	106531130	+	0	NA	intron (NM_001371242, intron 8 of 21)	Charlie7a|DNA|hAT-Charlie	19095	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
209384	chr7	76310101	76310430	+	0	NA	Intergenic	MIR3|SINE|MIR	7592	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
188006	chr5	149542671	149542830	+	0	NA	intron (NM_001892, intron 2 of 9)	AluSx|SINE|Alu	7615	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
25525	chr10	7318821	7319080	+	0	NA	intron (NM_001029880, intron 4 of 20)	L2a|LINE|L2	90391	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
39353	chr11	59553721	59554550	+	0	NA	Intergenic	AluSg|SINE|Alu	39222	NM_001004711	390199		NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
35779	chr11	2167221	2167480	+	0	NA	intron (NM_000360, intron 6 of 12)	intron (NM_000360, intron 6 of 12)	4465	NM_199293	7054		NM_000360	ENSG00000180176	TH	DYT14|DYT5b|TYH	tyrosine hydroxylase	protein-coding
31771	chr10	98134271	98135630	+	0	NA	5' UTR (NM_001351012, exon 1 of 9)	5' UTR (NM_001351012, exon 1 of 9)	293	NM_001256619	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
187580	chr5	142818051	142818350	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	46973	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
34746	chr10	133784921	133785200	+	0	NA	Intergenic	LTR60B|LTR|ERV1	-158265	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
90513	chr17	1466121	1466650	+	0	NA	intron (NM_001080779, intron 31 of 31)	AluSp|SINE|Alu	-10153	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
124271	chr19	57774971	57775130	+	0	NA	intron (NM_001204814, intron 2 of 3)	AluY|SINE|Alu	5374	NM_017652	54807		NM_017652	ENSG00000083828	ZNF586	-	zinc finger protein 586	protein-coding
28132	chr10	43434851	43435050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1898	NM_001355446	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
212068	chr7	115006971	115007130	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	-71908	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
189467	chr5	173059771	173060330	+	0	NA	intron (NM_001168393, intron 1 of 3)	intron (NM_001168393, intron 1 of 3)	3698	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
202894	chr6	159990021	159990500	+	0	NA	intron (NM_000876, intron 1 of 47)	THE1C|LTR|ERVL-MaLR	17404	NR_047511	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
139313	chr2	219535021	219535550	+	0	NA	exon (NM_018674, exon 6 of 10)	exon (NM_018674, exon 6 of 10)	7812	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
82293	chr16	15597401	15597850	+	0	NA	intron (NM_001184998, intron 26 of 26).2	MamRep137|DNA|TcMar-Tigger	13470	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
67630	chr14	73026551	73028130	+	0	NA	promoter-TSS (NM_001281734)	promoter-TSS (NM_001281734)	-234	NM_021260	53349		NM_021260	ENSG00000165861	ZFYVE1	DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1	zinc finger FYVE-type containing 1	protein-coding
74809	chr15	63466551	63467080	+	0	NA	Intergenic	Intergenic	-37696	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
193400	chr6	30416821	30417280	+	0	NA	Intergenic	Intergenic	71894	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
70270	chr14	101725501	101726100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4637	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
197221	chr6	63923201	63923430	+	0	NA	intron (NM_001292009, intron 35 of 43)	intron (NM_001292009, intron 35 of 43)	116479	NR_157848	112935969		NR_157848	ENSG00000236345	SCAT8	EYS-AS1	S-phase cancer associated transcript 8	ncRNA
57373	chr12	121797001	121797530	+	0	NA	intron (NR_152738, intron 4 of 4)	CpG	-3577	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
229362	chr9	120981651	120982030	+	0	NA	intron (NM_001735, intron 27 of 40)	intron (NM_001735, intron 27 of 40)	-29009	NR_148450	110599590		NR_148450		C5-OT1	C5T1LNCRNA	C5 3' UTR overlapping transcript 1	ncRNA
78988	chr15	101722471	101725280	+	0	NA	intron (NM_152334, intron 1 of 18)	intron (NM_152334, intron 1 of 18)	598	NM_152334	123283		NM_152334	ENSG00000185418	TARS3	TARSL2|ThrRS-L	threonyl-tRNA synthetase 3	protein-coding
57425	chr12	121885001	121885600	+	0	NA	intron (NM_001171993, intron 1 of 15)	AluSc|SINE|Alu	3311	NM_001171993	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
233744	chrX	1383671	1384300	+	0	NA	Intergenic	AluY|SINE|Alu	8128	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
208920	chr7	74063251	74063930	+	0	NA	intron (NM_001278918, intron 24 of 27)	intron (NM_001278918, intron 24 of 27)	-20214	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
87065	chr16	68364651	68365150	+	0	NA	exon (NM_018667, exon 5 of 9)	exon (NM_018667, exon 5 of 9)	53786	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
44724	chr11	111768701	111768900	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2411	NM_181700	5519		NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
150307	chr21	42000671	42001600	+	0	NA	intron (NM_020727, intron 1 of 1)	MIR|SINE|MIR	-8059	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
209230	chr7	75729521	75730530	+	0	NA	intron (NM_001243198, intron 1 of 28)	intron (NM_001243198, intron 1 of 28)	8916	NM_001243198	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
232595	chr9	136421951	136422550	+	0	NA	intron (NM_015160, intron 12 of 12)	intron (NM_015160, intron 12 of 12)	11592	NM_015160	23203		NM_015160	ENSG00000165688	PMPCA	Alpha-MPP|CLA1|CPD3|INPP5E|MAS2|P-55|SCAR2	peptidase, mitochondrial processing subunit alpha	protein-coding
171592	chr3	197034321	197035050	+	0	NA	Intergenic	Intergenic	-4868	NM_005929	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
121670	chr19	47501101	47501300	+	0	NA	intron (NR_038456, intron 2 of 11)	intron (NR_038456, intron 2 of 11)	13863	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
78239	chr15	90667751	90668050	+	0	NA	intron (NR_120372, intron 2 of 3)	AluJo|SINE|Alu	7666	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
154809	chr22	37017851	37017950	+	0	NA	intron (NM_003312, intron 2 of 2)	intron (NM_003312, intron 2 of 2)	1547	NM_003312	7263		NM_003312	ENSG00000128311	TST	RDS	thiosulfate sulfurtransferase	protein-coding
136367	chr2	176098521	176099100	+	0	NA	promoter-TSS (NM_021193)	promoter-TSS (NM_021193)	-985	NM_021193	3238		NM_021193	ENSG00000170178	HOXD12	HOX4H	homeobox D12	protein-coding
206369	chr7	30594011	30595880	+	0	NA	promoter-TSS (NM_002047)	promoter-TSS (NM_002047)	67	NM_002047	2617		NM_002047	ENSG00000106105	GARS1	CMT2D|DSMAV|GARS|GlyRS|HMN5|HMN5A|HMND5|SMAD1|SMAJI	glycyl-tRNA synthetase 1	protein-coding
224455	chr9	15500971	15501530	+	0	NA	intron (NM_001317898, intron 3 of 10)	intron (NM_001317898, intron 3 of 10)	9039	NM_021144	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
221176	chr8	120446251	120446350	+	0	NA	intron (NM_022045, intron 1 of 21)	intron (NM_022045, intron 1 of 21)	881	NM_022045	27085		NM_022045	ENSG00000172167	MTBP	MDM2BP	MDM2 binding protein	protein-coding
165159	chr3	72289101	72289700	+	0	NA	Intergenic	Intergenic	138143	NR_038221	201617		NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
85345	chr16	50194471	50194830	+	0	NA	intron (NM_001040284, intron 2 of 12)	AluJr|SINE|Alu	41344	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
225053	chr9	33179221	33179600	+	0	NA	non-coding (NR_108109, exon 5 of 5)	non-coding (NR_108109, exon 5 of 5)	11551	NR_108108	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
186413	chr5	135535951	135536250	+	0	NA	promoter-TSS (NM_006161)	promoter-TSS (NM_006161)	-136	NM_006161	4762		NM_006161	ENSG00000181965	NEUROG1	AKA|CCDDRD|Math4C|NEUROD3|bHLHa6|ngn1	neurogenin 1	protein-coding
31948	chr10	100658421	100658930	+	0	NA	Intergenic	AluSz|SINE|Alu	-76721	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
215333	chr7	157361751	157362500	+	0	NA	intron (NM_001363676, intron 2 of 6)	intron (NM_001363676, intron 2 of 6)	25121	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
72637	chr15	38484371	38484800	+	0	NA	exon (NM_173611, exon 8 of 8)	exon (NM_173611, exon 8 of 8)	30458	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
87090	chr16	68509821	68510680	+	0	NA	Intergenic	CpG	-28963	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
50481	chr12	47779221	47780400	+	0	NA	intron (NM_017842, intron 2 of 2)	MER1B|DNA|hAT-Charlie	6572	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
98136	chr17	46009151	46009260	+	0	NA	intron (NR_165166, intron 7 of 9)	AluJb|SINE|Alu	9955	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
130188	chr2	84302971	84303200	+	0	NA	Intergenic	Intergenic	12403	NR_003663	388965		NM_001013648		FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
188167	chr5	150451101	150451300	+	0	NA	Intergenic	AluSq|SINE|Alu	-1461	NM_001025071	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
17156	chr1	156202901	156203100	+	0	NA	intron (NM_001377390, intron 3 of 3)	L2a|LINE|L2	8896	NM_001286184	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
152819	chr22	21864171	21864580	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSq|SINE|Alu	3270	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
74269	chr15	57213871	57214030	+	0	NA	intron (NM_207038, intron 8 of 19)	intron (NM_207038, intron 8 of 19)	-5480	NM_001306220	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
112899	chr19	7634601	7635080	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-1121	NM_174895	126006		NM_174895	ENSG00000174788	PCP2	GPSM4|PCD5	Purkinje cell protein 2	protein-coding
222988	chr8	143245401	143248130	+	0	NA	promoter-TSS (NM_001271156)	promoter-TSS (NM_001271156)	-174	NM_001271156	286128		NM_173832	ENSG00000181638	ZFP41	ZNF753|zfp-41	ZFP41 zinc finger protein	protein-coding
22288	chr1	212790601	212790930	+	0	NA	intron (NM_001297737, intron 1 of 4)	AluY|SINE|Alu	1012	NM_001297739	25936		NM_015471	ENSG00000117697	NSL1	C1orf48|DC8|MIS14	NSL1 component of MIS12 kinetochore complex	protein-coding
124344	chr19	58312501	58313280	+	0	NA	intron (NR_144445, intron 3 of 3)	HERVK3-int|LTR|ERVK	7516	NR_144445	105372481		NM_001396080	ENSG00000142396	ERVK3-1	-	endogenous retrovirus group K3 member 1	protein-coding
80396	chr16	2571801	2572280	+	0	NA	intron (NM_002613, intron 6 of 13)	AluSx1|SINE|Alu	-31344	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
94166	chr17	28381201	28381880	+	0	NA	exon (NM_015077, exon 2 of 9)	exon (NM_015077, exon 2 of 9)	9846	NM_015077	23098		NM_015077	ENSG00000004139	SARM1	HsTIR|MyD88-5|SAMD2|SARM|hSARM1	sterile alpha and TIR motif containing 1	protein-coding
50280	chr12	46363001	46363400	+	0	NA	intron (NM_001307936, intron 11 of 14)	intron (NM_001307936, intron 11 of 14)	9573	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
77383	chr15	82853171	82853530	+	0	NA	intron (NM_004839, intron 6 of 8)	intron (NM_004839, intron 6 of 8)	43722	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
190058	chr5	177594671	177595030	+	0	NA	intron (NM_017510, intron 4 of 4)	MER102b|DNA|hAT-Charlie	2647	NM_017510	54732		NM_017510	ENSG00000184840	TMED9	GMP25|HSGP25L2G|p24a2|p24alpha2|p25	transmembrane p24 trafficking protein 9	protein-coding
58978	chr13	19888851	19889030	+	0	NA	Intergenic	L1M8|LINE|L1	-25291	NM_001142684	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
119389	chr19	40226201	40226950	+	0	NA	exon (NM_024877, exon 1 of 5)	exon (NM_024877, exon 1 of 5)	114	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
86617	chr16	67394371	67394530	+	0	NA	promoter-TSS (NM_015964)	promoter-TSS (NM_015964)	-952	NM_016140	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
76025	chr15	72117071	72118980	+	0	NA	promoter-TSS (NM_145204)	promoter-TSS (NM_145204)	125	NM_006901	4649		NM_006901	ENSG00000066933	MYO9A	CMS24	myosin IXA	protein-coding
22939	chr1	225977171	225977330	+	0	NA	Intergenic	AluSg|SINE|Alu	22093	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
233175	chr9	137187751	137189980	+	0	NA	promoter-TSS (NM_013366)	promoter-TSS (NM_013366)	189	NM_003731	8636		NM_003731	ENSG00000176101	SSNA1	N14|NA-14|NA14	SS nuclear autoantigen 1	protein-coding
70471	chr14	102071671	102072030	+	0	NA	Intergenic	Intergenic	15194	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
115497	chr19	15393671	15394030	+	0	NA	intron (NM_014371, intron 12 of 13)	AluSp|SINE|Alu	-14063	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
155417	chr22	38402401	38402750	+	0	NA	Intergenic	AluSc|SINE|Alu	-3649	NR_002821	400927		NM_001034843		TPTEP2	Z98749.2	TPTE pseudogene 2	pseudo
211572	chr7	105677471	105679350	+	0	NA	intron (NM_001318229, intron 1 of 9)	intron (NM_001318229, intron 1 of 9)	745	NM_001318229	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
106115	chr18	9181501	9181900	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	44137	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
81830	chr16	11571951	11573530	+	0	NA	intron (NR_024320, intron 1 of 3)	L1MD3|LINE|L1	13633	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
25422	chr10	6567271	6567430	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	12926	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
122524	chr19	49623171	49623750	+	0	NA	intron (NM_020719, intron 11 of 13)	AluY|SINE|Alu	16683	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
227776	chr9	93121701	93122550	+	0	NA	3' UTR (NM_004148, exon 4 of 4)	3' UTR (NM_004148, exon 4 of 4)	12126	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
10587	chr1	67393171	67393530	+	0	NA	intron (NM_001374259, intron 16 of 16)	intron (NM_001374259, intron 16 of 16)	37052	NM_001018067	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
105978	chr18	5543871	5544030	+	0	NA	promoter-TSS (NM_001384686)	promoter-TSS (NM_001384686)	47	NM_001384696	23136		NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1 like 3	protein-coding
57522	chr12	122130821	122131730	+	0	NA	intron (NM_014938, intron 7 of 16)	intron (NM_014938, intron 7 of 16)	-36444	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
155591	chr22	38760551	38762300	+	0	NA	Intergenic	Intergenic	-5427	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
182956	chr5	71231421	71231790	+	0	NA	intron (NR_033968, intron 1 of 3).5	THE1B-int|LTR|ERVL-MaLR	-23474	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
115511	chr19	15421901	15422100	+	0	NA	3' UTR (NM_001330395, exon 8 of 8)	3' UTR (NM_001330395, exon 8 of 8)	-3012	NM_001291478	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
205010	chr7	6480021	6480480	+	0	NA	intron (NM_006854, intron 1 of 4)	intron (NM_006854, intron 1 of 4)	3902	NM_001100603	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
31818	chr10	99329901	99330100	+	0	NA	exon (NM_020348, exon 1 of 11)	exon (NM_020348, exon 1 of 11)	644	NM_020348	26507		NM_020348	ENSG00000119946	CNNM1	ACDP1|CLP-1	cyclin and CBS domain divalent metal cation transport mediator 1	protein-coding
49283	chr12	19739201	19739430	+	0	NA	Intergenic	Intergenic	-275370	NR_040098	100506393		NR_040098	ENSG00000256287	LINC02398	-	long intergenic non-protein coding RNA 2398	ncRNA
191325	chr6	7041571	7041930	+	0	NA	Intergenic	Intergenic	-65993	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
220545	chr8	100703451	100704030	+	0	NA	promoter-TSS (NR_106992)	promoter-TSS (NR_106992)	-716	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
237926	chrX	132059071	132059230	+	0	NA	intron (NM_001042452, intron 2 of 9)	intron (NM_001042452, intron 2 of 9)	35561	NM_001042452	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
58741	chr12	132602971	132603330	+	0	NA	TTS (NM_001195520)	TTS (NM_001195520)	7432	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
115836	chr19	16516921	16518000	+	0	NA	TTS (NM_006387)	TTS (NM_006387)	21066	NM_032207	84167		NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
116364	chr19	17877771	17878700	+	0	NA	intron (NM_000453, intron 7 of 14)	AluSx|SINE|Alu	6290	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
24162	chr1	235867701	235869250	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	-1569	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
46058	chr11	122726721	122727950	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	71613	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
147369	chr20	58407321	58408240	+	0	NA	intron (NM_001195677, intron 1 of 2)	L1ME3Cz|LINE|L1	18551	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
23247	chr1	227794421	227795350	+	0	NA	Intergenic	Intergenic	6365	NR_168384	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
203358	chr6	170305271	170305430	+	0	NA	intron (NM_001286380, intron 1 of 10)	intron (NM_001286380, intron 1 of 10)	-1372	NM_001286381	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
132268	chr2	104842651	104843050	+	0	NA	intron (NR_037883, intron 1 of 3)	CpG	8626	NR_131234	100506421		NR_037883	ENSG00000233639	PANTR1	LINC01158|linc-Brn1a|linc-POU3F3	POU3F3 adjacent non-coding transcript 1	ncRNA
66894	chr14	65208051	65208550	+	0	NA	Intergenic	LTR8|LTR|ERV1	14047	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
144316	chr20	34871451	34871550	+	0	NA	intron (NM_178026, intron 1 of 14)	intron (NM_178026, intron 1 of 14)	1356	NM_178026	2686		NM_178025	ENSG00000131067	GGT7	D20S101|GGT4|GGTL3|GGTL5	gamma-glutamyltransferase 7	protein-coding
182606	chr5	66147171	66148030	+	0	NA	intron (NM_139168, intron 1 of 12)	intron (NM_139168, intron 1 of 12)	2765	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
213747	chr7	140443821	140444280	+	0	NA	Intergenic	Intergenic	35455	NM_013446	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
225425	chr9	35067951	35068050	+	0	NA	exon (NM_007126, exon 3 of 17)	exon (NM_007126, exon 3 of 17)	4308	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
145590	chr20	44531351	44532250	+	0	NA	promoter-TSS (NM_181805)	promoter-TSS (NM_181805)	19	NM_001281444	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
164129	chr3	56718771	56719150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35695	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
98403	chr17	46581171	46581480	+	0	NA	Intergenic	AluSz|SINE|Alu	-1603	NM_001288811	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
224023	chr9	3181371	3181790	+	0	NA	promoter-TSS (NR_121585)	promoter-TSS (NR_121585)	-9	NR_121585	101929247		NR_121585	ENSG00000236511	LINC01231	-	long intergenic non-protein coding RNA 1231	ncRNA
95426	chr17	36105571	36106330	+	0	NA	TTS (NM_001291470)	TTS (NM_001291470)	2123	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
211465	chr7	105096621	105097080	+	0	NA	intron (NM_182931, intron 15 of 26)	intron (NM_182931, intron 15 of 26)	82645	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
218668	chr8	57994301	57995280	+	0	NA	5' UTR (NM_001377989, exon 1 of 4)	5' UTR (NM_001377989, exon 1 of 4)	267	NM_147189	90362		NM_147189	ENSG00000169122	FAM110B	C8orf72	family with sequence similarity 110 member B	protein-coding
49076	chr12	14426701	14427380	+	0	NA	intron (NM_001286515, intron 2 of 12)	intron (NM_001286515, intron 2 of 12)	41759	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
35119	chr11	688821	689350	+	0	NA	intron (NM_001367390, intron 2 of 11)	intron (NM_001367390, intron 2 of 11)	6137	NM_021008	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
45187	chr11	117326151	117326450	+	0	NA	intron (NM_001271933, intron 1 of 31)	AluSx|SINE|Alu	-1554	NM_014956	22897		NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
31111	chr10	89329071	89329430	+	0	NA	intron (NM_001549, intron 1 of 1)	intron (NM_001549, intron 1 of 1)	1253	NM_001289758	3437		NM_001549	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41	interferon induced protein with tetratricopeptide repeats 3	protein-coding
136611	chr2	178761801	178762100	+	0	NA	intron (NM_133437, intron 42 of 191)	intron (NM_133437, intron 42 of 191)	-14976	NR_120594	101927055		NR_120594	ENSG00000237298	LOC101927055	-	uncharacterized LOC101927055	ncRNA
148111	chr20	63431771	63433100	+	0	NA	intron (NM_001382235, intron 8 of 16)	intron (NM_001382235, intron 8 of 16)	40220	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
26994	chr10	26792901	26793300	+	0	NA	intron (NR_145410, intron 2 of 11)	intron (NR_145410, intron 2 of 11)	67858	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
105301	chr17	82521621	82522380	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	2268	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
203671	chr7	1007271	1007430	+	0	NA	intron (NR_156697, intron 2 of 4)	intron (NR_156697, intron 2 of 4)	15676	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
105034	chr17	82056701	82056900	+	0	NA	TTS (NM_022156)	TTS (NM_022156)	4902	NM_212492	2873		NM_004127	ENSG00000169727	GPS1	COPS1|CSN1|SGN1	G protein pathway suppressor 1	protein-coding
151180	chr21	45071771	45071930	+	0	NA	non-coding (NR_027292, exon 1 of 1)	non-coding (NR_027292, exon 1 of 1)	1361	NR_027292	728039		NM_032653	ENSG00000293210	SSR4P1	C21orf122|PRED57|PRED90	signal sequence receptor subunit 4 pseudogene 1	pseudo
220827	chr8	102846701	102848350	+	0	NA	intron (NM_148174, intron 2 of 11)	intron (NM_148174, intron 2 of 11)	16638	NM_001301668	51582		NM_015878	ENSG00000155096	AZIN1	AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
43602	chr11	83168851	83169500	+	0	NA	exon (NM_001346415, exon 8 of 16)	exon (NM_001346415, exon 8 of 16)	12044	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
185460	chr5	131271701	131273160	+	0	NA	intron (NM_001038702, intron 1 of 4)	L2a|LINE|L2	8377	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
234638	chrX	19977351	19977650	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-7236	NM_198279	256643		NM_198279	ENSG00000173681	BCLAF3	CXorf23	BCLAF1 and THRAP3 family member 3	protein-coding
34558	chr10	133139001	133139200	+	0	NA	Intergenic	Intergenic	-21119	NM_001347864	85442		NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND	kinase non-catalytic C-lobe domain containing 1	protein-coding
7730	chr1	36124701	36125900	+	0	NA	promoter-TSS (NM_005202)	promoter-TSS (NM_005202)	-78	NM_001294347	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
222549	chr8	140600801	140601450	+	0	NA	intron (NM_012154, intron 1 of 18)	L2a|LINE|L2	34508	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
164994	chr3	71346251	71346950	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-41829	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
8456	chr1	40698851	40699830	+	0	NA	intron (NM_001142590, intron 2 of 14)	intron (NM_001142590, intron 2 of 14)	-7079	NR_024567	100130557		NR_024567		NFYC-AS1	0808y08y	NFYC antisense RNA 1	ncRNA
185791	chr5	132417101	132417400	+	0	NA	intron (NR_161242, intron 1 of 3)	intron (NR_161242, intron 1 of 3)	6321	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
132296	chr2	105141421	105141880	+	0	NA	Intergenic	Intergenic	-2463	NR_136172	105373984		NR_136172	ENSG00000226508	LINC01918	-	long intergenic non-protein coding RNA 1918	ncRNA
168462	chr3	143040401	143040600	+	0	NA	intron (NM_001080415, intron 23 of 27)	intron (NM_001080415, intron 23 of 27)	38930	NM_001320222	23350		NM_001080415	ENSG00000163714	U2SURP	SR140|fSAPa	U2 snRNP associated SURP domain containing	protein-coding
141181	chr2	239285151	239285900	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-19937	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
224329	chr9	6756471	6758400	+	0	NA	promoter-TSS (NM_001354000)	promoter-TSS (NM_001354000)	-538	NM_001353999	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
218696	chr8	58563651	58564180	+	0	NA	intron (NM_001348340, intron 2 of 9)	LTR41|LTR|ERVL	10654	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
172076	chr4	1035201	1035880	+	0	NA	Intergenic	CpG	23076	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
158110	chr22	50028871	50029380	+	0	NA	intron (NM_001350317, intron 13 of 13)	intron (NM_001350317, intron 13 of 13)	-16360	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
118190	chr19	35125471	35125630	+	0	NA	intron (NM_139284, intron 8 of 8)	intron (NM_139284, intron 8 of 8)	2850	NR_106947	102466205		NR_106947	ENSG00000284065	MIR6887	hsa-mir-6887	microRNA 6887	ncRNA
219219	chr8	66710871	66711450	+	0	NA	intron (NM_001204173, intron 3 of 18)	intron (NM_001204173, intron 3 of 18)	-1621	NM_001033578	23678		NM_013257	ENSG00000104205	SGK3	CISK|SGK2|SGKL	serum/glucocorticoid regulated kinase family member 3	protein-coding
147063	chr20	53708051	53708780	+	0	NA	Intergenic	Intergenic	100061	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
53216	chr12	62280471	62280830	+	0	NA	intron (NM_001351164, intron 1 of 21)	MLT1A0|LTR|ERVL-MaLR	20246	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
62839	chr13	109783001	109784000	+	0	NA	exon (NM_003749, exon 1 of 2)	exon (NM_003749, exon 1 of 2)	3083	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
63359	chr13	114039171	114039750	+	0	NA	intron (NM_001320822, intron 4 of 23).2	intron (NM_001320822, intron 4 of 23).2	38495	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
110895	chr19	2719751	2720350	+	0	NA	intron (NM_145173, intron 1 of 1)	intron (NM_145173, intron 1 of 1)	1322	NM_145173	148252		NM_145173	ENSG00000176490	DIRAS1	Di-Ras1|GBTS1|RIG	DIRAS family GTPase 1	protein-coding
150815	chr21	43958101	43960400	+	0	NA	intron (NM_001037553, intron 1 of 8)	(GT)n|Simple_repeat|Simple_repeat	33852	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
218940	chr8	60925071	60925230	+	0	NA	Intergenic	Intergenic	-14352	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
196449	chr6	43504851	43505530	+	0	NA	non-coding (NR_027394, exon 10 of 10)	non-coding (NR_027394, exon 10 of 10)	5153	NM_001012974	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
4920	chr1	23900301	23900500	+	0	NA	intron (NM_001841, intron 1 of 1)	LTR8|LTR|ERV1	12962	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
17398	chr1	156622971	156623580	+	0	NA	intron (NM_021817, intron 2 of 6)	intron (NM_021817, intron 2 of 6)	-1347	NR_135113	101928177		NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
65493	chr14	51877851	51878330	+	0	NA	intron (NM_053064, intron 2 of 3)	(CAGCAA)n|Simple_repeat|Simple_repeat	17478	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
39135	chr11	49434421	49434630	+	0	NA	Intergenic	Intergenic	-124003	NR_027044	440040		NR_027044	ENSG00000290401	GRM5P1	-	GRM5 pseudogene 1	pseudo
80158	chr16	2104721	2106280	+	0	NA	intron (NM_001009944, intron 20 of 45)	(GGCA)n|Simple_repeat|Simple_repeat	1248	NR_106965	102465985		NR_106965	ENSG00000283346	MIR6511B2	MIR6511B-2|hsa-mir-6511b-2	microRNA 6511b-2	ncRNA
93789	chr17	20381421	20382050	+	0	NA	intron (NR_023380, intron 12 of 15)	L1PA16|LINE|L1	-28781	NR_146076	347716		NR_146076		USP32P3	-	ubiquitin specific peptidase 32 pseudogene 3	pseudo
173888	chr4	24578571	24578950	+	0	NA	intron (NM_001358, intron 1 of 13)	AluJo|SINE|Alu	5794	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
175128	chr4	55321771	55321930	+	0	NA	Intergenic	Intergenic	-24392	NM_024592	79644		NM_024592	ENSG00000128039	SRD5A3	CDG1P|CDG1Q|KRIZI|S5AR|S5AR 3|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
3016	chr1	12082871	12083230	+	0	NA	intron (NM_001281430, intron 1 of 13)	L1ME3|LINE|L1	19673	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
205237	chr7	8016871	8017050	+	0	NA	intron (NM_138426, intron 2 of 7)	intron (NM_138426, intron 2 of 7)	48164	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
55958	chr12	110014901	110015450	+	0	NA	intron (NM_033121, intron 3 of 14)	intron (NM_033121, intron 3 of 14)	15745	NM_033121	88455		NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
9848	chr1	54233451	54233750	+	0	NA	intron (NM_145716, intron 14 of 17)	SVA_F|Retroposon|SVA	-2843	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
80851	chr16	3505171	3505830	+	0	NA	intron (NM_015041, intron 2 of 11)	AluYk4|SINE|Alu	-4394	NM_024793	23059		NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
64607	chr14	30611021	30611280	+	0	NA	intron (NM_001308097, intron 11 of 13)	MLT1J|LTR|ERVL-MaLR	-11104	NM_182835	23256		NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
135239	chr2	159514201	159514400	+	0	NA	intron (NM_001289975, intron 2 of 35)	intron (NM_001289975, intron 2 of 35)	-100994	NR_110588	643072		NR_110587	ENSG00000224152	BAZ2B-AS1	lnc-BAZ2B	BAZ2B antisense RNA 1	ncRNA
206781	chr7	36725421	36725830	+	0	NA	Intergenic	Intergenic	-1076	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
82744	chr16	21403201	21404280	+	0	NA	exon (NM_130464, exon 11 of 13)	exon (NM_130464, exon 11 of 13)	21638	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
16919	chr1	155893501	155894430	+	0	NA	Intergenic	AluSx3|SINE|Alu	16953	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
612	chr1	1313421	1314330	+	0	NA	exon (NM_017871, exon 9 of 17)	exon (NM_017871, exon 9 of 17)	-1309	NR_106785	102465435		NR_106785	ENSG00000283712	MIR6727	hsa-mir-6727	microRNA 6727	ncRNA
119083	chr19	39236371	39237030	+	0	NA	Intergenic	Intergenic	8306	NM_172139	282617		NM_172139	ENSG00000197110	IFNL3	IFN-lambda-3|IFN-lambda-4|IL-28B|IL-28C|IL28B|IL28C	interferon lambda 3	protein-coding
38601	chr11	46307471	46307950	+	0	NA	intron (NM_052854, intron 2 of 11)	intron (NM_052854, intron 2 of 11)	-25216	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
168575	chr3	148998721	148999850	+	0	NA	intron (NM_001184720, intron 4 of 6)	intron (NM_001184720, intron 4 of 6)	7745	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
15944	chr1	151828951	151829650	+	0	NA	intron (NM_005060, intron 2 of 10)	intron (NM_005060, intron 2 of 10)	2502	NM_005060	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
84926	chr16	31259301	31260130	+	0	NA	promoter-TSS (NM_001145808)	promoter-TSS (NM_001145808)	-260	NM_001145808	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
27031	chr10	26858601	26859000	+	0	NA	intron (NM_001178116, intron 1 of 11)	intron (NM_001178116, intron 1 of 11)	2158	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
170045	chr3	182789571	182789730	+	0	NA	Intergenic	Intergenic	-3854	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
172227	chr4	1327721	1328380	+	0	NA	intron (NM_005882, intron 4 of 7)	intron (NM_005882, intron 4 of 7)	18259	NM_001297433	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
13373	chr1	113907001	113907230	+	0	NA	exon (NM_001363690, exon 2 of 5)	exon (NM_001363690, exon 2 of 5)	1789	NM_022836	64858		NM_022836	ENSG00000118655	DCLRE1B	APOLLO|DKCB8|SNM1B|SNMIB	DNA cross-link repair 1B	protein-coding
138460	chr2	206356151	206356450	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	81290	NM_001285549	57683		NM_020923	ENSG00000204186	ZDBF2	Slx9	zinc finger DBF-type containing 2	protein-coding
13425	chr1	114234551	114234650	+	0	NA	Intergenic	MIRc|SINE|MIR	-80731	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
172343	chr4	1708751	1709000	+	0	NA	intron (NM_001306075, intron 1 of 6)	L2|LINE|L2	3444	NM_001306075	7884		NM_006527	ENSG00000163950	SLBP	HBP	stem-loop histone mRNA binding protein	protein-coding
92102	chr17	7573301	7575830	+	0	NA	promoter-TSS (NR_002918)	promoter-TSS (NR_002918)	-148	NR_002918	652965		NR_002918	ENSG00000209582	SNORA48	ACA48|SNORA48A	small nucleolar RNA, H/ACA box 48	snoRNA
202138	chr6	155093421	155093720	+	0	NA	intron (NM_001384546, intron 2 of 26)	L3|LINE|CR1	-13417	NM_001384547	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
91506	chr17	4943501	4944700	+	0	NA	intron (NM_001370306, intron 8 of 9)	intron (NM_001370306, intron 8 of 9)	3832	NM_001370307	26001		NM_015528	ENSG00000108523	RNF167	5730408C10Rik|LP2254|RING105	ring finger protein 167	protein-coding
216716	chr8	22366901	22368180	+	0	NA	promoter-TSS (NM_001135153)	promoter-TSS (NM_001135153)	2	NM_001135153	23516		NM_015359	ENSG00000104635	SLC39A14	HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
174523	chr4	40122321	40122580	+	0	NA	intron (NM_001318359, intron 10 of 18)	AluSx|SINE|Alu	-65251	NR_027277	344967		NR_027277	ENSG00000293349	LOC344967	ACOT7L|BACHL	acyl-CoA thioesterase 7 pseudogene	pseudo
8861	chr1	43423321	43423930	+	0	NA	intron (NM_001365999, intron 15 of 71)	intron (NM_001365999, intron 15 of 71)	-24914	NR_106793	102465440		NR_106793	ENSG00000274975	MIR6735	hsa-mir-6735	microRNA 6735	ncRNA
204290	chr7	2663921	2664200	+	0	NA	3' UTR (NM_025250, exon 14 of 14)	3' UTR (NM_025250, exon 14 of 14)	-15462	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
138791	chr2	216108371	216109800	+	0	NA	promoter-TSS (NM_021141)	promoter-TSS (NM_021141)	-263	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
81183	chr16	4472601	4473100	+	0	NA	intron (NM_001351995, intron 2 of 5)	L1MB7|LINE|L1	1775	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
214414	chr7	149825921	149826900	+	0	NA	intron (NR_163594, intron 94 of 102)	intron (NR_163594, intron 94 of 102)	-11965	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
184866	chr5	112355151	112355650	+	0	NA	intron (NM_022140, intron 1 of 22)	intron (NM_022140, intron 1 of 22)	63877	NR_144931	64097		NM_022140	ENSG00000129595	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
63157	chr13	113633001	113633400	+	0	NA	exon (NM_007111, exon 6 of 12)	exon (NM_007111, exon 6 of 12)	24998	NM_000705	496		NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting subunit beta	protein-coding
187819	chr5	146753401	146754000	+	0	NA	intron (NM_001271899, intron 2 of 9)	intron (NM_001271899, intron 2 of 9)	125057	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
80026	chr16	1942851	1944450	+	0	NA	promoter-TSS (NM_001382265)	promoter-TSS (NM_001382265)	-451	NM_001382264	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
227749	chr9	93092601	93092950	+	0	NA	Intergenic	L2|LINE|L2	-3442	NM_032310	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
81728	chr16	11299971	11300130	+	0	NA	Intergenic	Intergenic	6477	NR_031678	100313773		NR_031678	ENSG00000221801	MIR548H2	MIR548H-2|MIRN548H2	microRNA 548h-2	ncRNA
220321	chr8	98893751	98893850	+	0	NA	intron (NM_001256312, intron 1 of 12)	intron (NM_001256312, intron 1 of 12)	48810	NM_001256312	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
50466	chr12	47757171	47757950	+	0	NA	intron (NM_001098532, intron 1 of 26)	intron (NM_001098532, intron 1 of 26)	838	NM_001098532	10411		NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
191541	chr6	11494771	11494930	+	0	NA	Intergenic	Intergenic	-42899	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
123842	chr19	55232651	55232950	+	0	NA	intron (NM_014931, intron 17 of 23)	intron (NM_014931, intron 17 of 23)	-1848	NR_106862	102465482		NR_106862	ENSG00000275519	MIR6804	hsa-mir-6804	microRNA 6804	ncRNA
76360	chr15	74569901	74570900	+	0	NA	intron (NM_006465, intron 2 of 8)	intron (NM_006465, intron 2 of 8)	29180	NM_006465	10620		NM_006465	ENSG00000179361	ARID3B	BDP|DRIL2	AT-rich interaction domain 3B	protein-coding
137038	chr2	190804071	190804580	+	0	NA	Intergenic	Intergenic	-76496	NM_001256310	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
166053	chr3	108820401	108821250	+	0	NA	Intergenic	Intergenic	-1961	NM_001317747	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
44152	chr11	96189351	96189700	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-151913	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
226159	chr9	63819771	63819930	+	0	NA	promoter-TSS (NR_039688).3	promoter-TSS (NR_039688).3	-196	NR_039688	100616184		NR_039688	ENSG00000276029	MIR4477A	-	microRNA 4477a	ncRNA
21502	chr1	205743621	205744930	+	0	NA	intron (NM_022731, intron 1 of 6)	MIRb|SINE|MIR	5907	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
157606	chr22	46035271	46037680	+	0	NA	Intergenic	Intergenic	8393	NR_027036	100271722		NR_027036		LINC00899	-	long intergenic non-protein coding RNA 899	ncRNA
22106	chr1	211654871	211655530	+	0	NA	TTS (NR_131925)	TTS (NR_131925)	15392	NR_131925	105748977		NR_131925	ENSG00000227764	NTRAS	LINC01693	non-coding transcript regulating alternative splicing	ncRNA
235809	chrX	49199021	49199280	+	0	NA	non-coding (NR_046649, exon 1 of 2)	non-coding (NR_046649, exon 1 of 2)	311	NR_046649	100873921		NR_046649	ENSG00000237341	SYP-AS1	-	SYP antisense RNA 1	ncRNA
105807	chr18	2937301	2937700	+	0	NA	intron (NM_001375809, intron 7 of 19)	AluSq2|SINE|Alu	9123	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
30431	chr10	79047951	79049230	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	18858	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
90354	chr17	1204721	1205500	+	0	NA	intron (NM_001322841, intron 1 of 22)	AluSx|SINE|Alu	-17838	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
68055	chr14	75251051	75251150	+	0	NA	Intergenic	MIR|SINE|MIR	-27728	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
26068	chr10	12875051	12875160	+	0	NA	Intergenic	Intergenic	126608	NM_031455	83643		NM_031455	ENSG00000151468	CCDC3	-	coiled-coil domain containing 3	protein-coding
29629	chr10	71805751	71806450	+	0	NA	intron (NM_001171933, intron 9 of 22)	intron (NM_001171933, intron 9 of 22)	-5783	NM_001171936	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
76395	chr15	74626051	74626300	+	0	NA	intron (NM_001130028, intron 7 of 12)	intron (NM_001130028, intron 7 of 12)	10339	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
55241	chr12	101875201	101875730	+	0	NA	Intergenic	AluJr|SINE|Alu	-2115	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
51249	chr12	51019021	51019280	+	0	NA	intron (NM_001174125, intron 1 of 15)	intron (NM_001174125, intron 1 of 15)	6991	NM_001174129	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
189929	chr5	177385301	177386500	+	0	NA	intron (NM_003052, intron 2 of 12)	intron (NM_003052, intron 2 of 12)	1466	NM_003052	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
158069	chr22	49958351	49958600	+	0	NA	Intergenic	Intergenic	-2297	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
60784	chr13	45300321	45301200	+	0	NA	Intergenic	Intergenic	35687	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
201691	chr6	149564971	149567580	+	0	NA	promoter-TSS (NM_138785)	promoter-TSS (NM_138785)	-100	NM_138785	116254		NM_138785	ENSG00000055211	GINM1	C6orf72	glycosylated integral membrane protein 1	protein-coding
188239	chr5	151027301	151027700	+	0	NA	exon (NM_002084, exon 4 of 5)	exon (NM_002084, exon 4 of 5)	6909	NM_002084	2878		NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
157956	chr22	49807801	49809080	+	0	NA	intron (NM_001304808, intron 2 of 12)	L1MB3|LINE|L1	15891	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
39514	chr11	61070271	61070600	+	0	NA	Intergenic	AluY|SINE|Alu	-23528	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
102409	chr17	75604001	75604730	+	0	NA	intron (NM_001309242, intron 18 of 62)	intron (NM_001309242, intron 18 of 62)	16307	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
209152	chr7	75159621	75160350	+	0	NA	intron (NR_003187, intron 8 of 10)	AluJr|SINE|Alu	12013	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
232407	chr9	136051651	136052880	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	43024	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
7312	chr1	32581371	32581730	+	0	NA	intron (NR_111980, intron 2 of 3)	AluSq2|SINE|Alu	42123	NM_001291496	653121		NM_144621	ENSG00000160062	ZBTB8A	BOZF1|ZBTB8|ZNF916A	zinc finger and BTB domain containing 8A	protein-coding
177147	chr4	108126721	108127380	+	0	NA	intron (NM_016269, intron 3 of 11)	L2c|LINE|L2	39747	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
135167	chr2	157784201	157784600	+	0	NA	intron (NM_001111067, intron 3 of 10)	intron (NM_001111067, intron 3 of 10)	54230	NM_001347667	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
205169	chr7	7465151	7465250	+	0	NA	intron (NM_001037763, intron 15 of 34)	L1HS|LINE|L1	70673	NM_001037763	340267		NM_001037763	ENSG00000215018	COL28A1	COL28	collagen type XXVIII alpha 1 chain	protein-coding
36144	chr11	3133071	3133430	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	32060	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
137974	chr2	201193801	201195230	+	0	NA	intron (NM_001230, intron 4 of 7)	intron (NM_001230, intron 4 of 7)	11374	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
142233	chr20	3095851	3096150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10911	NR_038395	100134015		NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
45389	chr11	118318821	118319630	+	0	NA	Intergenic	Intergenic	14495	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
35317	chr11	1032901	1033100	+	0	NA	intron (NM_005961, intron 2 of 32)	intron (NM_005961, intron 2 of 32)	3718	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
41381	chr11	65996971	65997830	+	0	NA	3' UTR (NM_001242486, exon 6 of 6)	3' UTR (NM_001242486, exon 6 of 6)	-4679	NM_001143985	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
28414	chr10	47762351	47763100	+	0	NA	promoter-TSS (NM_181519).2	promoter-TSS (NM_181519).2	-44	NM_031912	83849		NM_031912	ENSG00000204176	SYT15	CHR10SYT|SYT15B|sytXV	synaptotagmin 15	protein-coding
65075	chr14	39424801	39425000	+	0	NA	intron (NM_203301, intron 1 of 3)	AluSc5|SINE|Alu	7600	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
166359	chr3	112992521	112992780	+	0	NA	intron (NM_138485, intron 1 of 4)	intron (NM_138485, intron 1 of 4)	1666	NM_014170	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
95648	chr17	37996701	37996900	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7193	NM_001001418	414060		NM_001001418	ENSG00000278299	TBC1D3C	PRC17|TBC1D3|TBC1D3A|TBC1D3D	TBC1 domain family member 3C	protein-coding
73708	chr15	45126371	45126770	+	0	NA	intron (NM_001276268, intron 1 of 5)	L2c|LINE|L2	3309	NM_001276266	90527		NM_144565	ENSG00000140254	DUOXA1	NIP|NUMBIP|mol	dual oxidase maturation factor 1	protein-coding
176757	chr4	102263051	102263350	+	0	NA	intron (NM_022154, intron 7 of 7)	intron (NM_022154, intron 7 of 7)	61112	NM_001135148	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
17028	chr1	156065201	156065680	+	0	NA	intron (NR_133653, intron 1 of 3)	intron (NR_133653, intron 1 of 3)	4280	NR_133653	57111		NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
42816	chr11	72824521	72824780	+	0	NA	intron (NM_033388, intron 8 of 17)	intron (NM_033388, intron 8 of 17)	10239	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
216133	chr8	11455921	11457600	+	0	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	9993	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
72517	chr15	34099701	34099900	+	0	NA	intron (NM_020154, intron 1 of 4)	AluJo|SINE|Alu	2062	NM_020154	56851		NM_020154	ENSG00000134153	EMC7	C11orf3|C15orf24|HT022|ORF1-FL1	ER membrane protein complex subunit 7	protein-coding
194774	chr6	34143821	34144550	+	0	NA	intron (NM_000841, intron 1 of 10)	CpG	1902	NM_000841	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
31450	chr10	95963201	95964000	+	0	NA	intron (NM_001349008, intron 12 of 34)	L2|LINE|L2	-36167	NM_001001732	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
160121	chr3	19962621	19962880	+	0	NA	intron (NM_001292048, intron 2 of 5)	L1ME4b|LINE|L1	15653	NM_004162	5868		NM_004162	ENSG00000144566	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
79175	chr16	297451	297750	+	0	NA	intron (NM_181050, intron 6 of 9)	intron (NM_181050, intron 6 of 9)	14436	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
189194	chr5	171423501	171423700	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	3953	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
131945	chr2	99183121	99183580	+	0	NA	intron (NR_028356, intron 1 of 6)	AluSx1|SINE|Alu	2166	NM_145212	51263		NM_016503	ENSG00000185414	MRPL30	L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28|uL30m	mitochondrial ribosomal protein L30	protein-coding
67510	chr14	70968651	70969550	+	0	NA	exon (NM_001308160, exon 5 of 34)	exon (NM_001308160, exon 5 of 34)	61641	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
158363	chr22	50467751	50467850	+	0	NA	exon (NM_001365819, exon 3 of 40)	exon (NM_001365819, exon 3 of 40)	7235	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
144537	chr20	35717001	35717230	+	0	NA	intron (NM_184234, intron 9 of 16)	AluSx|SINE|Alu	17710	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
196476	chr6	43577321	43578330	+	0	NA	intron (NM_001291969, intron 1 of 8)	AluSc8|SINE|Alu	1640	NM_001291970	5429		NM_006502	ENSG00000170734	POLH	RAD30|RAD30A|XP-V|XPV	DNA polymerase eta	protein-coding
105586	chr18	267401	269100	+	0	NA	promoter-TSS (NM_005131)	promoter-TSS (NM_005131)	-203	NM_005131	9984		NM_005131	ENSG00000079134	THOC1	DFNA86|HPR1|P84|P84N5	THO complex subunit 1	protein-coding
8110	chr1	39196401	39198400	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	113233	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
86952	chr16	68118851	68119450	+	0	NA	intron (NM_173165, intron 1 of 9)	AluY|SINE|Alu	33780	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
110722	chr19	2315651	2316580	+	0	NA	Intergenic	Intergenic	-7961	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
59684	chr13	29362851	29363200	+	0	NA	intron (NM_001384606, intron 7 of 14)	intron (NM_001384606, intron 7 of 14)	-65635	NM_015233	23281		NM_015233	ENSG00000132938	MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated scaffold protein 2	protein-coding
207272	chr7	43973571	43974030	+	0	NA	intron (NR_003655, intron 7 of 15)	intron (NR_003655, intron 7 of 15)	-24068	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
100405	chr17	60398221	60398680	+	0	NA	Intergenic	Intergenic	-6317	NM_032582	84669		NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding
127623	chr2	43060571	43060730	+	0	NA	Intergenic	Intergenic	-21107	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
73342	chr15	42065151	42065250	+	0	NA	Intergenic	Intergenic	-14497	NM_001206670	123745		NM_198442	ENSG00000188089	PLA2G4E	-	phospholipase A2 group IVE	protein-coding
194673	chr6	33668471	33669500	+	0	NA	exon (NM_002224, exon 18 of 58)	exon (NM_002224, exon 18 of 58)	-29143	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
172049	chr4	1014471	1015530	+	0	NA	intron (NM_001370296, intron 2 of 6)	intron (NM_001370296, intron 2 of 6)	2536	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
4764	chr1	23527851	23528800	+	0	NA	TTS (NR_110799)	TTS (NR_110799)	2908	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
1947	chr1	6552751	6553130	+	0	NA	intron (NM_024654, intron 1 of 11)	AluSx|SINE|Alu	1573	NM_024654	79707		NM_024654	ENSG00000162408	NOL9	Grc3|NET6	nucleolar protein 9	protein-coding
231195	chr9	129931971	129932630	+	0	NA	intron (NM_001363755, intron 6 of 15)	A-rich|Low_complexity|Low_complexity	62695	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
1379	chr1	2532471	2532630	+	0	NA	Intergenic	Intergenic	-2287	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
90633	chr17	1656571	1656880	+	0	NA	exon (NM_006445, exon 35 of 43)	exon (NM_006445, exon 35 of 43)	-6859	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
213592	chr7	139383051	139383150	+	0	NA	intron (NM_016019, intron 2 of 9)	AluSx|SINE|Alu	23206	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
97077	chr17	42386871	42387360	+	0	NA	intron (NM_001369516, intron 1 of 23)	intron (NM_001369516, intron 1 of 23)	1327	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
127724	chr2	43508201	43508600	+	0	NA	intron (NR_144316, intron 23 of 36)	intron (NR_144316, intron 23 of 36)	87574	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
222576	chr8	140630701	140631100	+	0	NA	intron (NM_012154, intron 1 of 18)	AluJr|SINE|Alu	4733	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
230708	chr9	128779271	128779850	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-7074	NM_001375956	10444		NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related cell cycle regulator	protein-coding
172192	chr4	1245351	1245780	+	0	NA	intron (NM_001377192, intron 1 of 9)	intron (NM_001377192, intron 1 of 9)	3163	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
114430	chr19	12680171	12680330	+	0	NA	exon (NM_001369692, exon 2 of 7)	exon (NM_001369692, exon 2 of 7)	961	NM_001206974	1725		NM_001930	ENSG00000095059	DHPS	DHS|DS|MIG13|NEDSSWI	deoxyhypusine synthase	protein-coding
215206	chr7	155812021	155812280	+	0	NA	5' UTR (NM_000193, exon 1 of 3)	5' UTR (NM_000193, exon 1 of 3)	313	NM_000193	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
96487	chr17	40285371	40285530	+	0	NA	Intergenic	Intergenic	-2429	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
184898	chr5	112865751	112866050	+	0	NA	intron (NM_001204199, intron 4 of 4)	intron (NM_001204199, intron 4 of 4)	4613	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
46126	chr11	123023151	123023800	+	0	NA	Intergenic	AluSx3|SINE|Alu	5909	NR_027288	341056		NR_027288		SAE1P1	-	SAE1 pseudogene 1	pseudo
149405	chr21	31173951	31174850	+	0	NA	intron (NM_001353694, intron 15 of 27)	intron (NM_001353694, intron 15 of 27)	-13460	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
18499	chr1	161728701	161729200	+	0	NA	TTS (NM_001288829)	TTS (NM_001288829)	6297	NM_001288830	127943		NM_152378	ENSG00000162746	FCRLB	FCRL2|FCRLM2|FCRLY|FREB-2|FREB2|FcRY	Fc receptor like B	protein-coding
51587	chr12	52642371	52642530	+	0	NA	Intergenic	Intergenic	9761	NM_000423	3849		NM_000423	ENSG00000172867	KRT2	CK-2e|K2e|KRT2A|KRT2E|KRTE	keratin 2	protein-coding
232922	chr9	136881621	136883280	+	0	NA	Intergenic	Intergenic	-4066	NM_021138	7186		NM_021138	ENSG00000127191	TRAF2	MGC:45012|RNF117|TRAP|TRAP3	TNF receptor associated factor 2	protein-coding
142421	chr20	3898921	3899180	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluSg4|SINE|Alu	9234	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
65820	chr14	54884621	54885180	+	0	NA	intron (NM_001024024, intron 1 of 6)	intron (NM_001024024, intron 1 of 6)	-6707	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
49244	chr12	19436901	19437680	+	0	NA	Intergenic	MER39|LTR|ERV1	-2202	NM_153207	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
187952	chr5	149299151	149299450	+	0	NA	intron (NM_001146337, intron 1 of 17)	intron (NM_001146337, intron 1 of 17)	27441	NM_001146337	134265		NM_152406	ENSG00000157510	AFAP1L1	-	actin filament associated protein 1 like 1	protein-coding
207129	chr7	42914771	42915130	+	0	NA	Intergenic	MIR3|SINE|MIR	-2860	NM_001099858	79020		NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
33005	chr10	110600501	110600700	+	0	NA	intron (NM_005445, intron 22 of 28)	intron (NM_005445, intron 22 of 28)	32905	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
56355	chr12	113086251	113087350	+	0	NA	intron (NM_004416, intron 3 of 9)	intron (NM_004416, intron 3 of 9)	30070	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
119632	chr19	40795801	40796180	+	0	NA	intron (NR_037791, intron 7 of 11)	AluSp|SINE|Alu	-3201	NM_080732	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
137127	chr2	191023101	191024150	+	0	NA	intron (NR_136318, intron 1 of 2)	intron (NR_136318, intron 1 of 2)	2099	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
115446	chr19	15326721	15327780	+	0	NA	intron (NM_001379291, intron 1 of 19)	L1MB7|LINE|L1	5289	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
125663	chr2	20055021	20055280	+	0	NA	Intergenic	L2c|LINE|L2	-3522	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
92094	chr17	7566351	7566650	+	0	NA	intron (NM_015670, intron 6 of 10)	AluSx1|SINE|Alu	4508	NR_037926	100533955		NR_037926		SENP3-EIF4A1	-	SENP3-EIF4A1 readthrough (NMD candidate)	ncRNA
105782	chr18	2844521	2844780	+	0	NA	Intergenic	AluJb|SINE|Alu	-2356	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
29321	chr10	69374321	69374580	+	0	NA	intron (NM_033498, intron 10 of 20)	intron (NM_033498, intron 10 of 20)	42468	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
40011	chr11	62651851	62652600	+	0	NA	intron (NM_030628, intron 1 of 1)	AluSz|SINE|Alu	1077	NM_030628	80789		NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
111623	chr19	4120301	4120500	+	0	NA	intron (NM_030662, intron 1 of 10)	AluSz6|SINE|Alu	3722	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
102224	chr17	75236171	75236530	+	0	NA	TTS (NM_001172704)	TTS (NM_001172704)	25256	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
131671	chr2	97699471	97699630	+	0	NA	intron (NM_001351368, intron 6 of 7)	AluSq2|SINE|Alu	-14026	NM_001079	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
152420	chr22	20578351	20578600	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	70428	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
187602	chr5	142929451	142930230	+	0	NA	intron (NR_146198, intron 10 of 22)	intron (NR_146198, intron 10 of 22)	-60930	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
110526	chr19	2076121	2076930	+	0	NA	intron (NM_130807, intron 4 of 4)	CpG	19801	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
46313	chr11	125070851	125070950	+	0	NA	intron (NM_001145290, intron 1 of 17)	intron (NM_001145290, intron 1 of 17)	7595	NM_001145290	219855		NM_198277	ENSG00000134955	SLC37A2	SPX2|pp11662	solute carrier family 37 member 2	protein-coding
8270	chr1	39886271	39886430	+	0	NA	Intergenic	AluY|SINE|Alu	-2839	NR_132410	54802		NM_017646	ENSG00000043514	TRIT1	COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
171925	chr4	866771	867750	+	0	NA	exon (NM_005255, exon 21 of 28)	exon (NM_005255, exon 21 of 28)	-41131	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
64101	chr14	22767951	22768050	+	0	NA	exon (NM_005015, exon 3 of 10)	exon (NM_005015, exon 3 of 10)	1312	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
180901	chr5	34185671	34186280	+	0	NA	intron (NR_146599, intron 2 of 11)	intron (NR_146599, intron 2 of 11)	-3606	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
69164	chr14	92590121	92590580	+	0	NA	intron (NM_024832, intron 3 of 9)	MSTA|LTR|ERVL-MaLR	14116	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
68238	chr14	76960721	76962780	+	0	NA	intron (NR_133913, intron 1 of 2)	intron (NR_133913, intron 1 of 2)	2112	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
38107	chr11	35224301	35224880	+	0	NA	intron (NM_001202555, intron 9 of 9)	AluJb|SINE|Alu	61640	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
132029	chr2	100919371	100919530	+	0	NA	intron (NM_002518, intron 2 of 20)	intron (NM_002518, intron 2 of 20)	57711	NR_110213	101927142		NR_110213		NPAS2-AS1	-	NPAS2 antisense RNA 1	ncRNA
202027	chr6	152978701	152979100	+	0	NA	intron (NM_001142522, intron 1 of 4)	AluJo|SINE|Alu	4141	NM_012177	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
200245	chr6	132286351	132286450	+	0	NA	Intergenic	LTR42|LTR|ERVL	115075	NM_015529	26002		NM_015529	ENSG00000079931	MOXD1	MOX|PRO5780|dJ248E1.1	monooxygenase DBH like 1	protein-coding
235612	chrX	47959001	47959230	+	0	NA	Intergenic	Intergenic	44874	NM_001007088	7569		NM_006962	ENSG00000147118	ZNF182	HHZ150|KOX14|ZNF21|Zfp182	zinc finger protein 182	protein-coding
58824	chr12	132835251	132835350	+	0	NA	3' UTR (NM_001161346, exon 18 of 18)	3' UTR (NM_001161346, exon 18 of 18)	-6431	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
213796	chr7	140916901	140917650	+	0	NA	intron (NM_001374244, intron 1 of 18)	AluSq2|SINE|Alu	6993	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
77344	chr15	82535751	82536730	+	0	NA	TTS (NM_001021)	TTS (NM_001021)	4217	NM_001021	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
11280	chr1	89126711	89127850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1166	NM_004120	2634		NM_004120	ENSG00000162645	GBP2	-	guanylate binding protein 2	protein-coding
154862	chr22	37128851	37129450	+	0	NA	intron (NM_000878, intron 9 of 9)	L2a|LINE|L2	-19437	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
112908	chr19	7642101	7642630	+	0	NA	intron (NM_006949, intron 9 of 18)	MIR1_Amn|SINE|MIR	5255	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
206302	chr7	30157151	30157750	+	0	NA	exon (NM_152793, exon 3 of 3)	exon (NM_152793, exon 3 of 3)	22464	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
166585	chr3	118914321	118914680	+	0	NA	intron (NM_001353321, intron 4 of 6)	L1PA2|LINE|L1	-28576	NR_046230	100506765		NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
180651	chr5	17522201	17522400	+	0	NA	Intergenic	Intergenic	-30224	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
175804	chr4	77815171	77816000	+	0	NA	intron (NM_001365006, intron 1 of 11)	intron (NM_001365006, intron 1 of 11)	3479	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
222772	chr8	141871821	141872080	+	0	NA	Intergenic	Intergenic	-85637	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
208771	chr7	73555421	73555680	+	0	NA	intron (NM_001301061, intron 1 of 6)	intron (NM_001301061, intron 1 of 6)	1686	NR_036682	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
134270	chr2	135740121	135740550	+	0	NA	TTS (NR_163478)	TTS (NR_163478)	-1520	NM_014607	23190		NM_014607	ENSG00000144224	UBXN4	UBXD2|UBXDC1|erasin	UBX domain protein 4	protein-coding
68989	chr14	91479951	91480250	+	0	NA	intron (NM_001284281, intron 2 of 12)	intron (NM_001284281, intron 2 of 12)	30210	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
75064	chr15	64250401	64250600	+	0	NA	intron (NM_001329607, intron 4 of 11)	AluJb|SINE|Alu	-87478	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
44911	chr11	115221971	115223350	+	0	NA	intron (NM_001301043, intron 5 of 11)	intron (NM_001301043, intron 5 of 11)	-110917	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
89541	chr16	89197851	89197950	+	0	NA	intron (NM_001384773, intron 7 of 8)	intron (NM_001384773, intron 7 of 8)	2637	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
64808	chr14	34980051	34980380	+	0	NA	intron (NR_151701, intron 1 of 4)	AluY|SINE|Alu	2351	NR_151701	100506157		NR_151701		SRP54-AS1	-	SRP54 antisense RNA 1	ncRNA
39226	chr11	57646651	57647700	+	0	NA	5' UTR (NM_145008, exon 2 of 5)	5' UTR (NM_145008, exon 2 of 5)	2737	NM_145008	219539		NM_145008	ENSG00000166793	YPEL4	-	yippee like 4	protein-coding
18563	chr1	162790221	162791350	+	0	NA	promoter-TSS (NM_016371)	promoter-TSS (NM_016371)	83	NM_001304512	51478		NM_016371	ENSG00000132196	HSD17B7	PRAP|SDR37C1	hydroxysteroid 17-beta dehydrogenase 7	protein-coding
5728	chr1	26411901	26412100	+	0	NA	intron (NM_024674, intron 2 of 3)	intron (NM_024674, intron 2 of 3)	1183	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
238258	chrX	148270501	148270780	+	0	NA	Intergenic	Intergenic	-229977	NM_001169124	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
111724	chr19	4341971	4344680	+	0	NA	promoter-TSS (NM_001300862)	promoter-TSS (NM_001300862)	-202	NM_001159846	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
229309	chr9	120871851	120872380	+	0	NA	intron (NM_001286840, intron 3 of 14)	L2b|LINE|L2	-3204	NM_001286842	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
174090	chr4	30717921	30718180	+	0	NA	Intergenic	CpG	-2319	NM_002589	5099		NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
79416	chr16	686121	687180	+	0	NA	intron (NM_032259, intron 3 of 8)	intron (NM_032259, intron 3 of 8)	-2316	NM_001323919	339123		NM_001005920	ENSG00000161999	JMJD8	C16orf20|PP14397	jumonji domain containing 8	protein-coding
125764	chr2	23386651	23387330	+	0	NA	intron (NM_052920, intron 1 of 13)	CpG	1811	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
196765	chr6	45450351	45451250	+	0	NA	intron (NM_001278478, intron 3 of 5)	intron (NM_001278478, intron 3 of 5)	28525	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
112658	chr19	6865151	6865450	+	0	NA	Intergenic	AluY|SINE|Alu	-22279	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
28889	chr10	62813321	62814250	+	0	NA	exon (NM_001136179, exon 3 of 3)	exon (NM_001136179, exon 3 of 3)	2581	NM_001321037	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
218647	chr8	57164051	57164150	+	0	NA	Intergenic	L1PA3|LINE|L1	-54176	NR_038235	100507651		NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
91702	chr17	6446601	6446800	+	0	NA	intron (NM_019013, intron 2 of 5)	L2c|LINE|L2	2245	NM_001195228	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
96039	chr17	39448271	39448430	+	0	NA	intron (NM_004774, intron 1 of 16)	AluSx|SINE|Alu	2913	NM_004774	5469		NM_004774	ENSG00000125686	MED1	CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2	mediator complex subunit 1	protein-coding
180378	chr5	7857971	7858530	+	0	NA	TTS (NR_073608)	TTS (NR_073608)	-7117	NM_001089584	134121		NM_001089584	ENSG00000215217	CFAP90	C5orf49	cilia and flagella associated protein 90	protein-coding
132323	chr2	105363301	105363700	+	0	NA	intron (NM_201555, intron 6 of 7)	intron (NM_201555, intron 6 of 7)	25960	NM_001286537	79074		NM_024093	ENSG00000135974	C2orf49	asw	chromosome 2 open reading frame 49	protein-coding
24908	chr10	1053871	1054030	+	0	NA	intron (NM_001317955, intron 2 of 5)	Tigger1|DNA|TcMar-Tigger	-2435	NM_014023	22884		NM_014023	ENSG00000047056	WDR37	NOCGUS	WD repeat domain 37	protein-coding
213768	chr7	140654551	140654850	+	0	NA	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	-13240	NM_001318053	27147		NM_015689	ENSG00000146966	DENND2A	FAM31D|KIAA1277	DENN domain containing 2A	protein-coding
99953	chr17	57408351	57408680	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	115082	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
37160	chr11	13776121	13776480	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-8086	NR_149108	105376562		NR_149108	ENSG00000255411	LINC02548	-	long intergenic non-protein coding RNA 2548	ncRNA
86111	chr16	57660151	57660250	+	0	NA	intron (NM_001370440, intron 12 of 14)	intron (NM_001370440, intron 12 of 14)	-8106	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
202249	chr6	156912351	156912900	+	0	NA	intron (NM_001371656, intron 5 of 20)	L2|LINE|L2	-123802	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
196839	chr6	47252771	47252930	+	0	NA	intron (NM_014452, intron 4 of 5)	intron (NM_014452, intron 4 of 5)	57055	NM_014452	27242		NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
112371	chr19	5990251	5990980	+	0	NA	intron (NR_046376, intron 1 of 3)	intron (NR_046376, intron 1 of 3)	12212	NR_046376	100128568		NR_046376	ENSG00000266983	RANBP3-DT	-	RANBP3 divergent transcript	ncRNA
130025	chr2	74327771	74328130	+	0	NA	intron (NM_133478, intron 5 of 30)	intron (NM_133478, intron 5 of 30)	-12925	NM_021196	57835		NM_021196	ENSG00000188687	SLC4A5	NBC4|NBCe2	solute carrier family 4 member 5	protein-coding
132247	chr2	102434701	102435080	+	0	NA	intron (NM_003853, intron 5 of 11)	L3|LINE|CR1	2601	NR_039930	100616157		NR_039930	ENSG00000264764	MIR4772	mir-4772	microRNA 4772	ncRNA
216512	chr8	20301651	20302280	+	0	NA	intron (NM_021020, intron 1 of 3)	intron (NM_021020, intron 1 of 3)	1998	NM_021020	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
37408	chr11	17257171	17257330	+	0	NA	Intergenic	L2a|LINE|L2	-19464	NM_001352666	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
101175	chr17	65163821	65164450	+	0	NA	intron (NM_001165933, intron 7 of 16)	MLT1I|LTR|ERVL-MaLR	26765	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
104456	chr17	81101651	81102550	+	0	NA	intron (NM_001385159, intron 2 of 8)	intron (NM_001385159, intron 2 of 8)	4489	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
229003	chr9	113589371	113590150	+	0	NA	intron (NM_144488, intron 21 of 25)	MIRb|SINE|MIR	-4160	NM_144489	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
169109	chr3	155701901	155702180	+	0	NA	intron (NM_001349251, intron 2 of 22)	intron (NM_001349251, intron 2 of 22)	-25697	NM_001349250	23007		NM_014996	ENSG00000114805	PLCH1	HPE14|PLC eta 1|PLC-L3|PLCL3	phospholipase C eta 1	protein-coding
106754	chr18	23579721	23579980	+	0	NA	intron (NM_000271, intron 1 of 24)	AluY|SINE|Alu	6656	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
37195	chr11	14308671	14309330	+	0	NA	intron (NM_001177314, intron 1 of 5)	MIRb|SINE|MIR	49485	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
19338	chr1	173770321	173771080	+	0	NA	intron (NM_014458, intron 8 of 11)	AluSq2|SINE|Alu	53432	NM_001171182	91687		NM_033319	ENSG00000120334	CENPL	C1orf155|CENP-L|dJ383J4.3	centromere protein L	protein-coding
4106	chr1	19273951	19274450	+	0	NA	promoter-TSS (NR_040288)	promoter-TSS (NR_040288)	-78	NM_001348421	246181		NM_001145289	ENSG00000211454	AKR7L	AFAR3|AFB1-AR 3|AFB1-AR3|AKR7A4	aldo-keto reductase family 7 like (gene/pseudogene)	protein-coding
134543	chr2	143726501	143726900	+	0	NA	intron (NM_018460, intron 13 of 13)	intron (NM_018460, intron 13 of 13)	-210367	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
107144	chr18	35143901	35144280	+	0	NA	TTS (NM_001256420)	TTS (NM_001256420)	-96944	NM_032347	84307		NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
82783	chr16	21451351	21451930	+	0	NA	intron (NR_027155, intron 25 of 28)	L2|LINE|L2	-17185	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
86818	chr16	67870701	67870900	+	0	NA	exon (NM_001322040, exon 5 of 5)	exon (NM_001322040, exon 5 of 5)	-2252	NM_014329	23644		NM_014329	ENSG00000038358	EDC4	GE1|Ge-1|HEDL5|HEDLS|RCD-8|RCD8	enhancer of mRNA decapping 4	protein-coding
207994	chr7	55475171	55476000	+	0	NA	intron (NM_001321242, intron 4 of 4)	intron (NM_001321242, intron 4 of 4)	51295	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
20008	chr1	185293151	185293650	+	0	NA	Intergenic	Intergenic	23843	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
41689	chr11	66630201	66630950	+	0	NA	TTS (NM_006328)	TTS (NM_006328)	-8042	NM_001198843	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
21706	chr1	206739271	206739930	+	0	NA	Intergenic	Intergenic	31003	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
31617	chr10	97374801	97375650	+	0	NA	intron (NM_015179, intron 15 of 33)	AluJr4|SINE|Alu	26115	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
45681	chr11	119046171	119046530	+	0	NA	intron (NM_006389, intron 24 of 25)	MER58C|DNA|hAT-Charlie	10855	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
106903	chr18	25350551	25351180	+	0	NA	intron (NM_001308225, intron 1 of 6)	intron (NM_001308225, intron 1 of 6)	1301	NM_015461	25925		NM_015461	ENSG00000198795	ZNF521	EHZF|Evi3	zinc finger protein 521	protein-coding
91348	chr17	4497771	4499220	+	0	NA	promoter-TSS (NM_001124758)	promoter-TSS (NM_001124758)	-386	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
82128	chr16	14723451	14723750	+	0	NA	intron (NM_001277324, intron 5 of 7)	intron (NM_001277324, intron 5 of 7)	11911	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
211749	chr7	107186851	107187350	+	0	NA	intron (NM_001244262, intron 6 of 10).2	AluY|SINE|Alu	18097	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
52000	chr12	53968971	53969130	+	0	NA	promoter-TSS (NR_047518)	promoter-TSS (NR_047518)	-136	NR_047518	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
36830	chr11	9862101	9862330	+	0	NA	intron (NM_030962, intron 17 of 39)	intron (NM_030962, intron 17 of 39)	23073	NR_120539	101928008		NR_120539	ENSG00000255476	LOC101928008	-	uncharacterized LOC101928008	ncRNA
131358	chr2	96179651	96179950	+	0	NA	Intergenic	Intergenic	-28616	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
56406	chr12	113232821	113233800	+	0	NA	intron (NM_001351346, intron 3 of 28)	intron (NM_001351346, intron 3 of 28)	-10951	NM_001301214	53373		NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
57203	chr12	121493151	121493450	+	0	NA	intron (NM_001005366, intron 12 of 22)	MIRb|SINE|MIR	-48948	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
177072	chr4	108049001	108049800	+	0	NA	intron (NM_001130714, intron 9 of 9)	intron (NM_001130714, intron 9 of 9)	44736	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
25920	chr10	11319771	11320330	+	0	NA	intron (NR_126062, intron 2 of 2)	intron (NR_126062, intron 2 of 2)	24624	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70300	chr14	101791101	101791300	+	0	NA	intron (NM_001352914, intron 3 of 14)	L1MB8|LINE|L1	-18635	NM_001352916	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
106653	chr18	22983201	22983480	+	0	NA	intron (NM_203291, intron 7 of 18)	intron (NM_203291, intron 7 of 18)	49464	NM_203291	5932		NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JAWAD|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding
232044	chr9	133427601	133427800	+	0	NA	intron (NR_024514, intron 6 of 17)	MER66A|LTR|ERV1	5333	NM_139026	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
188148	chr5	150410401	150411000	+	0	NA	intron (NM_001025158, intron 1 of 5)	intron (NM_001025158, intron 1 of 5)	2056	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
137292	chr2	195560621	195561250	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-96023	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
82821	chr16	21489471	21489980	+	0	NA	intron (NR_027155, intron 1 of 28)	MER77B|LTR|ERVL	-11801	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
225537	chr9	35792301	35792500	+	0	NA	5' UTR (NM_001378923, exon 1 of 22)	5' UTR (NM_001378923, exon 1 of 22)	809	NM_003995	4882		NM_000907	ENSG00000159899	NPR2	AMD1|AMDM|ANPRB|ANPb|ECDM|GC-B|GCB|GUC2B|GUCY2B|NPRB|NPRBi|SNSK	natriuretic peptide receptor 2	protein-coding
152602	chr22	21393971	21394480	+	0	NA	Intergenic	Intergenic	10474	NM_001128635	440804		NM_001128635	ENSG00000274600	RIMBP3B	RIM-BP3.2|RIM-BP3.B|RIMBP3.2	RIMS binding protein 3B	protein-coding
187420	chr5	142000701	142000980	+	0	NA	3' UTR (NM_005471, exon 7 of 7)	3' UTR (NM_005471, exon 7 of 7)	12187	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
11466	chr1	89987151	89987630	+	0	NA	Intergenic	Intergenic	7576	NR_002830	492303		NR_002830		GEMIN8P4	-	gem nuclear organelle associated protein 8 pseudogene 4	pseudo
235998	chrX	54439821	54441100	+	0	NA	promoter-TSS (NM_058163)	promoter-TSS (NM_058163)	56	NM_058163	90121		NM_058163	ENSG00000158526	TSR2	DBA14|DT1P1A10|WGG1	TSR2 ribosome maturation factor	protein-coding
123432	chr19	54117301	54117500	+	0	NA	intron (NM_015629, intron 1 of 13)	LTR38|LTR|ERV1	1646	NM_015629	26121		NM_015629	ENSG00000105618	PRPF31	NY-BR-99|PRP31|RP11|SNRNP61	pre-mRNA processing factor 31	protein-coding
47604	chr12	5745321	5745580	+	0	NA	intron (NM_001364791, intron 11 of 24)	intron (NM_001364791, intron 11 of 24)	199809	NM_001278596	57101		NM_020373	ENSG00000047617	ANO2	C12orf3|TMEM16B	anoctamin 2	protein-coding
183201	chr5	76083971	76084130	+	0	NA	intron (NM_014979, intron 1 of 12)	CpG	667	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
23589	chr1	229664121	229664450	+	0	NA	Intergenic	Intergenic	38038	NM_014777	9816		NM_014777	ENSG00000135763	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis homolog	protein-coding
95847	chr17	38819501	38819700	+	0	NA	intron (NR_073428, intron 2 of 10)	AluSx|SINE|Alu	5721	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
175210	chr4	56757421	56758950	+	0	NA	Intergenic	Intergenic	63288	NR_073419	6691		NM_021114	ENSG00000128040	SPINK2	HUSI-II|SPGF29	serine peptidase inhibitor Kazal type 2	protein-coding
232450	chr9	136122621	136123380	+	0	NA	non-coding (NR_165242, exon 2 of 2)	non-coding (NR_165242, exon 2 of 2)	3980	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
191416	chr6	10383221	10383580	+	0	NA	Intergenic	CpG	-21102	NR_145448	109729173		NR_145448	ENSG00000285278	TFAP2A-AS2	HIPSTR	TFAP2A antisense RNA 2	ncRNA
61292	chr13	50214521	50214780	+	0	NA	intron (NR_109974, intron 2 of 6)	L1MB7|LINE|L1	42632	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
203945	chr7	1547421	1547830	+	0	NA	intron (NM_001097620, intron 8 of 8)	CpG	8580	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
153364	chr22	24434171	24435800	+	0	NA	intron (NM_001278500, intron 2 of 2)	intron (NM_001278500, intron 2 of 2)	2866	NM_001278497	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
224590	chr9	20321471	20322100	+	0	NA	Intergenic	Intergenic	89453	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
152952	chr22	22913871	22914230	+	0	NA	Intergenic	Intergenic	26234	NM_001178126	100423062		NM_001178126	ENSG00000254709	IGLL5	IGL|IGLV|VL-MAR	immunoglobulin lambda like polypeptide 5	protein-coding
144425	chr20	35413251	35413850	+	0	NA	Intergenic	Intergenic	-1408	NM_199487	55245		NM_018244	ENSG00000101019	UQCC1	BFZB|C20orf44|CBP3|UQCC	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding
145023	chr20	37992871	37993550	+	0	NA	intron (NM_014657, intron 8 of 8)	intron (NM_014657, intron 8 of 8)	40246	NM_014657	9675		NM_014657	ENSG00000101407	TTI1	KIAA0406|NEDMIM|smg-10	TELO2 interacting protein 1	protein-coding
10249	chr1	63773901	63774650	+	0	NA	5' UTR (NM_005012, exon 1 of 9)	5' UTR (NM_005012, exon 1 of 9)	258	NM_005012	4919		NM_005012	ENSG00000185483	ROR1	NTRKR1|dJ537F10.1	receptor tyrosine kinase like orphan receptor 1	protein-coding
165634	chr3	101778771	101779880	+	0	NA	promoter-TSS (NM_001348991)	promoter-TSS (NM_001348991)	114	NM_001348997	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
198486	chr6	106316121	106316650	+	0	NA	promoter-TSS (NR_104403)	promoter-TSS (NR_104403)	-119	NR_104403	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
105850	chr18	3014601	3014800	+	0	NA	Intergenic	Intergenic	-1556	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
225316	chr9	34592871	34593680	+	0	NA	Intergenic	Intergenic	-3135	NM_001207011	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
60743	chr13	44483601	44484080	+	0	NA	intron (NM_183422, intron 1 of 2)	intron (NM_183422, intron 1 of 2)	-9539	NM_001243798	8848		NM_006022	ENSG00000102804	TSC22D1	HUCEP-2|Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
167290	chr3	128648821	128649380	+	0	NA	intron (NM_002950, intron 1 of 9)	L1MA10|LINE|L1	1718	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
31952	chr10	100670821	100671480	+	0	NA	Intergenic	CpG	-64246	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
15983	chr1	151942551	151943050	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-33289	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
3610	chr1	16351931	16353380	+	0	NA	promoter-TSS (NM_018994)	promoter-TSS (NM_018994)	-175	NM_018994	54455		NM_018994	ENSG00000037637	FBXO42	Fbx42|JFK	F-box protein 42	protein-coding
159938	chr3	17087571	17088130	+	0	NA	intron (NM_015184, intron 5 of 5)	intron (NM_015184, intron 5 of 5)	154654	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
112877	chr19	7614851	7614950	+	0	NA	intron (NM_020902, intron 11 of 16)	L2b|LINE|L2	-2539	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
65569	chr14	51961951	51962250	+	0	NA	intron (NM_053064, intron 3 of 3)	Charlie4a|DNA|hAT-Charlie	-27446	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
82056	chr16	12819401	12819700	+	0	NA	Intergenic	Intergenic	-15663	NM_018340	55313		NM_018340	ENSG00000103381	CPPED1	CSTP1	calcineurin like phosphoesterase domain containing 1	protein-coding
46235	chr11	124669071	124669580	+	0	NA	intron (NM_170601, intron 2 of 9)	intron (NM_170601, intron 2 of 9)	4414	NM_170601	54414		NM_018978	ENSG00000110013	SIAE	AIS6|CSE-C|CSEC|LSE|YSG2	sialic acid acetylesterase	protein-coding
61561	chr13	66223001	66223200	+	0	NA	Intergenic	Intergenic	4850	NR_039853	100616205		NR_039853	ENSG00000263561	MIR4704	-	microRNA 4704	ncRNA
158228	chr22	50277921	50278630	+	0	NA	intron (NM_001376885, intron 30 of 36)	intron (NM_001376885, intron 30 of 36)	-7895	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
12664	chr1	109280721	109281180	+	0	NA	exon (NM_001350237, exon 5 of 7)	exon (NM_001350237, exon 5 of 7)	2194	NM_001350237	84722		NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
183080	chr5	73695121	73695380	+	0	NA	intron (NM_001177693, intron 2 of 35)	intron (NM_001177693, intron 2 of 35)	69092	NM_001177693	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
39703	chr11	61746601	61747000	+	0	NA	3' UTR (NM_006133, exon 20 of 20)	3' UTR (NM_006133, exon 20 of 20)	-5836	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
67845	chr14	73952871	73953030	+	0	NA	intron (NM_182476, intron 1 of 11)	AluSq|SINE|Alu	2648	NM_182476	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
29091	chr10	68064571	68064730	+	0	NA	intron (NM_001278185, intron 3 of 23)	L1ME4a|LINE|L1	10633	NM_015601	26091		NM_015601	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
115479	chr19	15366671	15367030	+	0	NA	intron (NM_005858, intron 9 of 13)	AluSp|SINE|Alu	12937	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
92324	chr17	8143151	8145300	+	0	NA	TTS (NR_106943)	TTS (NR_106943)	846	NR_106943	102465532		NR_106943	ENSG00000284117	MIR6883	hsa-mir-6883	microRNA 6883	ncRNA
81144	chr16	4404261	4404980	+	0	NA	intron (NM_001351729, intron 6 of 27)	intron (NM_001351729, intron 6 of 27)	11277	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
103195	chr17	77461751	77463630	+	0	NA	intron (NM_001293698, intron 1 of 9)	AluSz|SINE|Alu	8663	NM_001293698	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
139056	chr2	218733771	218734000	+	0	NA	intron (NM_014640, intron 2 of 19)	intron (NM_014640, intron 2 of 19)	23050	NM_014640	9654		NM_014640	ENSG00000135912	TTLL4	-	tubulin tyrosine ligase like 4	protein-coding
165733	chr3	105369501	105370300	+	0	NA	intron (NM_001243281, intron 1 of 13)	intron (NM_001243281, intron 1 of 13)	2991	NM_001627	214		NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
86450	chr16	66927451	66927550	+	0	NA	Intergenic	MIRb|SINE|MIR	-1964	NM_001128850	6236		NM_004165	ENSG00000166592	RRAD	RAD|RAD1|REM3	RRAD, Ras related glycolysis inhibitor and calcium channel regulator	protein-coding
129161	chr2	67689251	67689550	+	0	NA	Intergenic	Intergenic	136162	NR_110271	101927701		NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
65738	chr14	53149821	53150500	+	0	NA	intron (NM_030637, intron 1 of 11)	L2b|LINE|L2	3163	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
192943	chr6	27791921	27792780	+	0	NA	Intergenic	Intergenic	15579	NM_003519	8340		NM_003519	ENSG00000185130	H2BC13	H2B/c|H2BFC|HIST1H2BL|dJ97D16.4	H2B clustered histone 13	protein-coding
135148	chr2	157466921	157467180	+	0	NA	Intergenic	Intergenic	-22961	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
177168	chr4	108149401	108149600	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	17297	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
63651	chr14	20987701	20987900	+	0	NA	Intergenic	Intergenic	-2180	NM_001029991	64745		NM_022734	ENSG00000165792	METTL17	METT11D1	methyltransferase like 17	protein-coding
75998	chr15	70752101	70752400	+	0	NA	intron (NM_018003, intron 1 of 18)	AluSp|SINE|Alu	11308	NM_018003	55075		NM_018003	ENSG00000137831	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
184659	chr5	107668571	107668730	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	2287	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
159074	chr3	11820751	11820850	+	0	NA	intron (NR_158710, intron 5 of 8)	intron (NR_158710, intron 5 of 8)	26085	NR_135611	132001		NM_138807	ENSG00000144559	TAMM41	C3orf31|COXPD56|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
125286	chr2	10495271	10495700	+	0	NA	Intergenic	Intergenic	45757	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
76870	chr15	77952051	77952350	+	0	NA	Intergenic	Intergenic	-7639	NR_157580	440292		NR_157580		COMMD4P1	-	COMM domain containing 4 pseudogene 1	pseudo
36728	chr11	9229851	9230150	+	0	NA	intron (NM_001243254, intron 1 of 22)	AluY|SINE|Alu	35326	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
34445	chr10	132425201	132425600	+	0	NA	Intergenic	CpG	-19789	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
211776	chr7	107560101	107560330	+	0	NA	intron (NM_001379511, intron 1 of 20)	MER63A|DNA|hAT-Blackjack	3705	NM_001379516	10466		NM_006348	ENSG00000164597	COG5	CDG2I|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding
184909	chr5	112896421	112896900	+	0	NA	3' UTR (NM_001204199, exon 5 of 5)	3' UTR (NM_001204199, exon 5 of 5)	25567	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
175037	chr4	52750851	52751600	+	0	NA	intron (NM_024534, intron 1 of 3)	CpG	200	NM_001242690	100288413		NM_024534	ENSG00000226887	ERVMER34-1	HEMO|envMER34	endogenous retrovirus group MER34 member 1, envelope	protein-coding
177196	chr4	108244771	108244930	+	0	NA	Intergenic	Intergenic	72730	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
114840	chr19	13832271	13832500	+	0	NA	TTS (NM_001367834)	TTS (NM_001367834)	3974	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
20173	chr1	192983551	192983650	+	0	NA	Intergenic	Intergenic	-35343	NR_126003	102724954		NR_126003		RGS2-AS1	LINC01032	RSG2 antisense RNA 1	ncRNA
38309	chr11	43868601	43869500	+	0	NA	Intergenic	Intergenic	-11781	NM_139178	221120		NM_139178	ENSG00000166199	ALKBH3	ABH3|DEPC-1|DEPC1|PCA1|hABH3	alkB homolog 3, alpha-ketoglutarate dependent dioxygenase	protein-coding
40640	chr11	64722671	64724230	+	0	NA	promoter-TSS (NM_001376262)	promoter-TSS (NM_001376262)	-253	NM_001376267	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
2105	chr1	8024351	8024650	+	0	NA	intron (NM_018948, intron 1 of 3)	L2c|LINE|L2	1809	NM_018948	54206		NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
27945	chr10	42078301	42078700	+	0	NA	Intergenic	Intergenic	289545	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
114375	chr19	12496971	12497330	+	0	NA	Intergenic	Intergenic	-12334	NM_152601	163051		NM_152601	ENSG00000242852	ZNF709	-	zinc finger protein 709	protein-coding
227572	chr9	92292001	92292630	+	0	NA	TTS (NR_037424)	TTS (NR_037424)	232	NR_037424	100500918		NR_037424	ENSG00000281156	MIR3651	mir-3651	microRNA 3651	ncRNA
133691	chr2	127128651	127128750	+	0	NA	Intergenic	Intergenic	-21546	NM_139349	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
36183	chr11	3217171	3217980	+	0	NA	promoter-TSS (NR_027138)	promoter-TSS (NR_027138)	-757	NR_027138	283303		NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	ncRNA
235966	chrX	53578251	53578350	+	0	NA	intron (NM_031407, intron 43 of 83)	SVA_E|Retroposon|SVA	-21026	NR_029484	406889		NR_029484	ENSG00000208012	MIRLET7F2	LET7F2|MIRNLET7F2|let-7f-2	microRNA let-7f-2	ncRNA
92968	chr17	17109921	17111780	+	0	NA	intron (NM_015134, intron 3 of 22)	L1MC3|LINE|L1	68393	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
1590	chr1	3615151	3615450	+	0	NA	Intergenic	Intergenic	-3792	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
43979	chr11	94127471	94127630	+	0	NA	Intergenic	L2-1_AMi|LINE|L2	-1291	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
119555	chr19	40608451	40608550	+	0	NA	exon (NM_003573, exon 12 of 33)	exon (NM_003573, exon 12 of 33)	7131	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
53524	chr12	66925101	66925400	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-120981	NM_001379348	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
6051	chr1	27132201	27133180	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	22435	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
57726	chr12	122880471	122881550	+	0	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	15114	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
3978	chr1	18885351	18885850	+	0	NA	exon (NM_001161504, exon 5 of 15)	exon (NM_001161504, exon 5 of 15)	-2325	NR_039844	100616120		NR_039844	ENSG00000265606	MIR4695	-	microRNA 4695	ncRNA
164272	chr3	57574601	57574800	+	0	NA	intron (NM_001660, intron 5 of 5)	AluJr|SINE|Alu	18426	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
126860	chr2	31956971	31957500	+	0	NA	intron (NM_001371918, intron 2 of 10)	L1ME4b|LINE|L1	53529	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
55812	chr12	108768701	108769130	+	0	NA	Intergenic	CpG	-37397	NM_014325	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
14613	chr1	145390601	145390900	+	0	NA	intron (NM_001278267, intron 14 of 137)	intron (NM_001278267, intron 14 of 137)	15028	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
165116	chr3	71660221	71660480	+	0	NA	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	65052	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
13863	chr1	117686471	117686700	+	0	NA	Intergenic	Intergenic	80537	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
227465	chr9	91037071	91037630	+	0	NA	Intergenic	Intergenic	37782	NR_033912	100129316		NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
210574	chr7	100358321	100359050	+	0	NA	intron (NR_036570, intron 14 of 16)	intron (NR_036570, intron 14 of 16)	682	NM_178238	29990		NM_013440	ENSG00000121716	PILRB	FDFACT1|FDFACT2	paired immunoglobin like type 2 receptor beta	protein-coding
32711	chr10	104170501	104171160	+	0	NA	intron (NM_025145, intron 20 of 37)	L2a|LINE|L2	48053	NR_030340	693194		NR_030340	ENSG00000208033	MIR609	MIRN609|hsa-mir-609	microRNA 609	ncRNA
202276	chr6	157058421	157058680	+	0	NA	intron (NM_001363725, intron 2 of 17)	AluSx|SINE|Alu	22123	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
59643	chr13	28144171	28144330	+	0	NA	intron (NM_175854, intron 1 of 18)	AluY|SINE|Alu	-5076	NR_029383	100288730		NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
21223	chr1	204130171	204130500	+	0	NA	TTS (NM_001297761)	TTS (NM_001297761)	-11073	NR_123739	101929441		NR_123739	ENSG00000230550	ERLNC1	ElncRNA1|TC0101441	estrogen receptor responsive lncRNA 1	ncRNA
145329	chr20	41093821	41094080	+	0	NA	intron (NM_003286, intron 9 of 20)	AluJb|SINE|Alu	-43593	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
176700	chr4	101025701	101026330	+	0	NA	exon (NM_000944, exon 14 of 14)	exon (NM_000944, exon 14 of 14)	214857	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
179503	chr4	184651371	184651800	+	0	NA	intron (NR_144312, intron 1 of 14)	intron (NR_144312, intron 1 of 14)	1847	NM_001345897	201973		NM_152683	ENSG00000164306	PRIMPOL	CCDC111|MYP22|Primpol1	primase and DNA directed polymerase	protein-coding
228795	chr9	111866851	111867350	+	0	NA	Intergenic	Intergenic	-29714	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
125669	chr2	20164501	20164700	+	0	NA	Intergenic	Intergenic	60530	NM_002997	6382		NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
87410	chr16	70578401	70578800	+	0	NA	TTS (NM_012426)	TTS (NM_012426)	-1295	NM_152456	146433		NM_152456	ENSG00000157368	IL34	C16orf77|IL-34	interleukin 34	protein-coding
36461	chr11	5705551	5705850	+	0	NA	intron (NM_006074, intron 4 of 7)	intron (NM_006074, intron 4 of 7)	15910	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
74182	chr15	55495071	55495230	+	0	NA	intron (NM_001033560, intron 3 of 8)	MER5A|DNA|hAT-Charlie	3434	NR_037923	100533483		NR_037923	ENSG00000261771	DNAAF4-CCPG1	DYX1C1-CCPG1	DNAAF4-CCPG1 readthrough (NMD candidate)	ncRNA
167568	chr3	129426451	129426830	+	0	NA	intron (NM_207307, intron 1 of 8)	AluY|SINE|Alu	1996	NM_207307	90288		NM_207307	ENSG00000172771	EFCAB12	C3orf25	EF-hand calcium binding domain 12	protein-coding
111629	chr19	4127151	4127450	+	0	NA	Intergenic	AluJb|SINE|Alu	-3178	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
7939	chr1	37544501	37544700	+	0	NA	intron (NM_024700, intron 2 of 3)	intron (NM_024700, intron 2 of 3)	9693	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
134988	chr2	152694051	152694950	+	0	NA	intron (NM_001365600, intron 3 of 25)	intron (NM_001365600, intron 3 of 25)	22961	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
13488	chr1	114718921	114719280	+	0	NA	intron (NM_001242891, intron 19 of 20)	AluJb|SINE|Alu	-2329	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
151936	chr22	19106171	19107230	+	0	NA	intron (NM_001184781, intron 1 of 9)	intron (NM_001184781, intron 1 of 9)	15712	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
232344	chr9	135498001	135498200	+	0	NA	intron (NM_001048265, intron 2 of 2)	intron (NM_001048265, intron 2 of 2)	1769	NM_144654	138162		NM_144654	ENSG00000160345	PIERCE1	C9orf116|RbEST47	piercer of microtubule wall 1	protein-coding
54712	chr12	93449071	93449630	+	0	NA	Intergenic	Intergenic	-7403	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
177372	chr4	110622821	110623180	+	0	NA	promoter-TSS (NM_000325)	promoter-TSS (NM_000325)	77	NM_000325	5308		NM_000325	ENSG00000164093	PITX2	ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired like homeodomain 2	protein-coding
57233	chr12	121535891	121538980	+	0	NA	intron (NM_001005366, intron 6 of 22)	CpG	42811	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
197788	chr6	87679451	87679550	+	0	NA	intron (NM_018064, intron 2 of 4)	AluSz6|SINE|Alu	22733	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
70330	chr14	101839171	101840230	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	29837	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
19742	chr1	181161071	181162130	+	0	NA	Intergenic	Intergenic	-12884	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
95298	chr17	35534801	35535780	+	0	NA	intron (NM_001363830, intron 1 of 4)	AluSp|SINE|Alu	2571	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
56436	chr12	113461771	113461930	+	0	NA	TTS (NM_022363)	TTS (NM_022363)	10021	NM_022363	64211		NM_022363	ENSG00000089116	LHX5	-	LIM homeobox 5	protein-coding
215557	chr7	158807001	158807300	+	0	NA	intron (NM_020728, intron 1 of 21)	AluY|SINE|Alu	22359	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
192976	chr6	27892631	27893900	+	0	NA	promoter-TSS (NM_003514)	promoter-TSS (NM_003514)	-80	NM_003514	8336		NM_003514	ENSG00000278677	H2AC17	H2A.1|H2A/n|H2AC11|H2AC13|H2AC15|H2AC16|H2AFN|HIST1H2AM|dJ193B12.1	H2A clustered histone 17	protein-coding
125580	chr2	16650671	16651430	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	14784	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
155275	chr22	38080751	38081780	+	0	NA	exon (NM_013356, exon 5 of 6)	exon (NM_013356, exon 5 of 6)	2919	NM_013356	23539		NM_013356	ENSG00000100156	SLC16A8	MCT3|REMP	solute carrier family 16 member 8	protein-coding
131058	chr2	88608401	88608600	+	0	NA	intron (NM_004836, intron 2 of 16)	intron (NM_004836, intron 2 of 16)	16429	NM_001313915	9451		NM_004836	ENSG00000172071	EIF2AK3	PEK|PERK|WRS	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding
36800	chr11	9572771	9575780	+	0	NA	promoter-TSS (NM_001143976)	promoter-TSS (NM_001143976)	-412	NM_001143976	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
52030	chr12	53999171	54001000	+	0	NA	promoter-TSS (NM_006897)	promoter-TSS (NM_006897)	-75	NR_047504	100874363		NR_047504	ENSG00000250451	HOXC-AS1	-	HOXC cluster antisense RNA 1	ncRNA
41597	chr11	66368401	66368900	+	0	NA	exon (NM_001532, exon 5 of 12)	exon (NM_001532, exon 5 of 12)	3110	NM_001532	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
71896	chr15	22569601	22569830	+	0	NA	intron (NM_004667, intron 28 of 36)	intron (NM_004667, intron 28 of 36)	48139	NM_001282472	653073		NM_001282472	ENSG00000179938	GOLGA8J	-	golgin A8 family member J	protein-coding
142148	chr20	2756221	2756480	+	0	NA	intron (NR_138537, intron 16 of 17)	intron (NR_138537, intron 16 of 17)	44277	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
20038	chr1	185338651	185339680	+	0	NA	Intergenic	Intergenic	-4126	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
21736	chr1	206800251	206800750	+	0	NA	intron (NM_153758, intron 2 of 6)	L2c|LINE|L2	-28006	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
78379	chr15	91706001	91706780	+	0	NA	Intergenic	Intergenic	-147318	NM_013272	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
234524	chrX	19599301	19599900	+	0	NA	intron (NM_001353892, intron 10 of 17)	intron (NM_001353892, intron 10 of 17)	71399	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
216248	chr8	12361731	12362450	+	0	NA	promoter-TSS (NR_026789)	promoter-TSS (NR_026789)	71	NR_026789	100133172		NR_026789		FAM66A	-	family with sequence similarity 66 member A	ncRNA
207123	chr7	42907771	42908150	+	0	NA	Intergenic	Intergenic	3883	NM_001363436	79020		NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
43176	chr11	75390051	75390530	+	0	NA	Intergenic	Intergenic	-9201	NM_001260507	6188		NM_001005	ENSG00000149273	RPS3	S3|uS3	ribosomal protein S3	protein-coding
4729	chr1	23346401	23347150	+	0	NA	Intergenic	AluY|SINE|Alu	-2491	NM_001102397	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
19308	chr1	173195651	173196250	+	0	NA	intron (NM_003326, intron 1 of 2)	intron (NM_003326, intron 1 of 2)	9582	NM_001297562	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
27363	chr10	30747621	30748080	+	0	NA	Intergenic	Intergenic	24631	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
199418	chr6	116669971	116670130	+	0	NA	Intergenic	L2a|LINE|L2	-1240	NM_001361189	221302		NM_145062	ENSG00000153975	ZUP1	C6orf113|DUB|ZUFSP	zinc finger containing ubiquitin peptidase 1	protein-coding
204825	chr7	5694321	5694580	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-13989	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
229303	chr9	120865371	120865600	+	0	NA	intron (NM_001286840, intron 9 of 14)	intron (NM_001286840, intron 9 of 14)	3426	NR_104601	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
81785	chr16	11529171	11529330	+	0	NA	Intergenic	L1MB7|LINE|L1	-2003	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
72268	chr15	30660971	30661330	+	0	NA	intron (NR_038255, intron 1 of 3)	intron (NR_038255, intron 1 of 3)	2433	NR_038254	100288637		NR_038253	ENSG00000187951	LOC100288637	-	OTU deubiquitinase 7A pseudogene	pseudo
118727	chr19	38259401	38259600	+	0	NA	Intergenic	L2a|LINE|L2	-3126	NM_033256	94274		NM_033256	ENSG00000167641	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1 regulatory inhibitor subunit 14A	protein-coding
24289	chr1	236528421	236528680	+	0	NA	intron (NM_201544, intron 2 of 9)	AluJo|SINE|Alu	-4042	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
143706	chr20	32230751	32231050	+	0	NA	exon (NM_015352, exon 6 of 7)	exon (NM_015352, exon 6 of 7)	-6895	NR_031726	100302183		NR_031726	ENSG00000284125	MIR1825	MIRN1825|hsa-mir-1825	microRNA 1825	ncRNA
12447	chr1	107783171	107783430	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-94801	NM_001079874	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
37438	chr11	17528101	17528380	+	0	NA	intron (NM_153676, intron 4 of 26)	intron (NM_153676, intron 4 of 26)	16176	NR_123738	10083		NM_005709	ENSG00000006611	USH1C	AIE-75|DFNB18|DFNB18A|NY-CO-37|NY-CO-38|PDZ-45|PDZ-73|PDZ-73/NY-CO-38|PDZ73|PDZD7C|ush1cpst	USH1 protein network component harmonin	protein-coding
224268	chr9	6063071	6063430	+	0	NA	Intergenic	L1P2|LINE|L1	-47626	NM_001243203	26953		NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
130325	chr2	84979671	84980900	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	9124	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
112071	chr19	5271201	5271400	+	0	NA	intron (NM_130853, intron 4 of 28)	intron (NM_130853, intron 4 of 28)	69512	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
202570	chr6	158680351	158680930	+	0	NA	intron (NM_001318745, intron 2 of 14)	AluJb|SINE|Alu	17237	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
180078	chr5	1105401	1106370	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	6178	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
96009	chr17	39223771	39224130	+	0	NA	intron (NM_001351360, intron 1 of 10)	intron (NM_001351360, intron 1 of 10)	1995	NM_198993	342667		NM_198993	ENSG00000141750	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
24938	chr10	1232351	1232650	+	0	NA	intron (NM_018702, intron 6 of 9)	(GT)n|Simple_repeat|Simple_repeat	72732	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
25043	chr10	3768871	3769030	+	0	NA	Intergenic	(AACAA)n|Simple_repeat|Simple_repeat	16259	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
132023	chr2	100812121	100812780	+	0	NA	Intergenic	Intergenic	-7689	NM_002518	4862		NM_002518	ENSG00000170485	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
199685	chr6	122730951	122731050	+	0	NA	Intergenic	Intergenic	-18201	NM_001319042	2173		NM_001446	ENSG00000164434	FABP7	B-FABP|BLBP|FABPB|MRG	fatty acid binding protein 7	protein-coding
91732	chr17	6656701	6657900	+	0	NA	promoter-TSS (NR_045985)	promoter-TSS (NR_045985)	-419	NR_045985	100652883		NR_045985		ALOX15P1	ALOX15P	arachidonate 15-lipoxygenase pseudogene 1	pseudo
54224	chr12	79932721	79933050	+	0	NA	intron (NM_001143885, intron 2 of 25)	intron (NM_001143885, intron 2 of 25)	2066	NM_001244992	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
175831	chr4	78105971	78106330	+	0	NA	intron (NM_025074, intron 2 of 73)	L1HS|LINE|L1	48580	NM_001166133	80144		NM_020875	ENSG00000138759	FRAS1	FRASRS1	Fraser extracellular matrix complex subunit 1	protein-coding
169103	chr3	155334871	155335050	+	0	NA	Intergenic	Intergenic	-41277	NM_001352129	100507537		NM_001352129	ENSG00000240045	STRIT1	DWORF	small transmembrane regulator of ion transport 1	protein-coding
17085	chr1	156132321	156133050	+	0	NA	intron (NM_170707, intron 2 of 11)	intron (NM_170707, intron 2 of 11)	6515	NM_001257374	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
96663	chr17	40678301	40678500	+	0	NA	Intergenic	AluJr4|SINE|Alu	-13223	NM_152349	125113		NM_152349	ENSG00000213424	KRT222	KA21|KRT222P	keratin 222	protein-coding
221941	chr8	129899971	129901030	+	0	NA	intron (NM_001353267, intron 2 of 12)	intron (NM_001353267, intron 2 of 12)	39311	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
170958	chr3	194447251	194447600	+	0	NA	intron (NR_164666, intron 13 of 32)	intron (NR_164666, intron 13 of 32)	20814	NM_024524	79572		NM_024524	ENSG00000133657	ATP13A3	AFURS1|PPH5	ATPase 13A3	protein-coding
174390	chr4	39047251	39047550	+	0	NA	intron (NM_001171654, intron 1 of 10)	AluSz|SINE|Alu	2569	NM_001007075	51088		NM_015990	ENSG00000109790	KLHL5	-	kelch like family member 5	protein-coding
229009	chr9	113675621	113675880	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	81621	NM_001276262	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
217675	chr8	30106471	30106630	+	0	NA	3' UTR (NM_015344, exon 4 of 4)	3' UTR (NM_015344, exon 4 of 4)	11142	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
153408	chr22	24837501	24837730	+	0	NA	intron (NM_133454, intron 2 of 24)	LTR13|LTR|ERVK	31394	NM_133454	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
168291	chr3	141507501	141508130	+	0	NA	intron (NM_006506, intron 1 of 23)	LTR67B|LTR|ERVL	20788	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
175516	chr4	74311771	74311930	+	0	NA	intron (NR_073114, intron 2 of 5)	intron (NR_073114, intron 2 of 5)	3380	NM_001270990	255324		NM_001013442	ENSG00000182585	EPGN	ALGV3072|EPG|PRO9904	epithelial mitogen	protein-coding
64838	chr14	35140521	35141100	+	0	NA	intron (NM_001256678, intron 3 of 6)	intron (NM_001256678, intron 3 of 6)	18258	NM_001256679	9692		NM_014672	ENSG00000100890	PRORP	COXPD54|KIAA0391|MRPP3	protein only RNase P catalytic subunit	protein-coding
122638	chr19	49834221	49834800	+	0	NA	intron (NM_030973, intron 13 of 17)	intron (NM_030973, intron 13 of 17)	2492	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
204547	chr7	4982621	4982900	+	0	NA	intron (NR_023385, intron 2 of 4)	intron (NR_023385, intron 2 of 4)	8775	NR_023385	441191		NR_015449	ENSG00000196204	RNF216P1	RNF216L|hCG2040556	ring finger protein 216 pseudogene 1	pseudo
134549	chr2	143801251	143801430	+	0	NA	Intergenic	AluSp|SINE|Alu	-135727	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
147228	chr20	57403351	57403950	+	0	NA	intron (NM_001291780, intron 4 of 4)	AluSq4|SINE|Alu	-10594	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
224296	chr9	6438121	6438380	+	0	NA	intron (NR_046386, intron 3 of 16)	L3b|LINE|CR1	25051	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
206002	chr7	26205251	26205350	+	0	NA	intron (NM_016587, intron 2 of 5)	intron (NM_016587, intron 2 of 5)	3555	NM_016587	11335		NM_007276	ENSG00000122565	CBX3	HECH|HP1-GAMMA|HP1Hs-gamma|HP1gamma	chromobox 3	protein-coding
180934	chr5	34898251	34898550	+	0	NA	intron (NM_144725, intron 10 of 10)	intron (NM_144725, intron 10 of 10)	17104	NR_026591	5810		NM_002853	ENSG00000113456	RAD1	HRAD1|REC1	RAD1 checkpoint DNA exonuclease	protein-coding
202327	chr6	157369171	157370180	+	0	NA	Intergenic	MER66B|LTR|ERV1	-11515	NM_153746	79683		NM_024630	ENSG00000175048	ZDHHC14	NEW1CP	zinc finger DHHC-type palmitoyltransferase 14	protein-coding
16475	chr1	154629171	154629330	+	0	NA	Intergenic	LTR55|LTR|ERVL?	-1253	NM_001365045	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
132329	chr2	105400171	105400400	+	0	NA	promoter-TSS (NM_001318894)	promoter-TSS (NM_001318894)	-618	NM_001318894	2274		NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
194697	chr6	33693771	33693930	+	0	NA	intron (NM_002224, intron 56 of 57)	intron (NM_002224, intron 56 of 57)	-4278	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
211644	chr7	106247701	106247900	+	0	NA	TTS (NM_005746)	TTS (NM_005746)	37183	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
10021	chr1	55277101	55277780	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	51799	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA
170608	chr3	186969971	186970330	+	0	NA	intron (NM_173216, intron 2 of 7)	L1MD2|LINE|L1	39624	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
196833	chr6	47097321	47097580	+	0	NA	Intergenic	Intergenic	-55118	NM_025048	266977		NM_025048	ENSG00000153292	ADGRF1	GPR110|KPG_012|PGR19|hGPCR36	adhesion G protein-coupled receptor F1	protein-coding
202243	chr6	156867551	156867850	+	0	NA	intron (NM_017519, intron 2 of 18)	intron (NM_017519, intron 2 of 18)	-87969	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
16323	chr1	154218301	154218630	+	0	NA	intron (NM_015449, intron 1 of 5)	intron (NM_015449, intron 1 of 5)	-1707	NM_001127320	9898		NM_014847	ENSG00000143569	UBAP2L	NEDLBF|NICE-4|NICE4	ubiquitin associated protein 2 like	protein-coding
38137	chr11	35319421	35319680	+	0	NA	intron (NM_004171, intron 1 of 10)	intron (NM_004171, intron 1 of 10)	100008	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
68208	chr14	76875921	76876300	+	0	NA	Intergenic	Intergenic	49702	NR_169572	145497		NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
64131	chr14	22859671	22860150	+	0	NA	Intergenic	AluSx4|SINE|Alu	-11830	NM_014045	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
8273	chr1	39900601	39901150	+	0	NA	exon (NM_005376, exon 2 of 2)	exon (NM_005376, exon 2 of 2)	1042	NM_001033082	4610		NM_005376	ENSG00000116990	MYCL	L-Myc|LMYC|MYCL1|bHLHe38	MYCL proto-oncogene, bHLH transcription factor	protein-coding
167596	chr3	129565821	129566430	+	0	NA	intron (NM_015103, intron 23 of 35)	L3|LINE|CR1	17740	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
7617	chr1	35505901	35507700	+	0	NA	exon (NM_024874, exon 3 of 21)	exon (NM_024874, exon 3 of 21)	50603	NM_024874	79932		NM_024874	ENSG00000142687	KIAA0319L	AAVR|AAVRL	KIAA0319 like	protein-coding
73493	chr15	43751671	43752350	+	0	NA	intron (NM_005313, intron 1 of 12)	intron (NM_005313, intron 1 of 12)	5572	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
32559	chr10	103366121	103366580	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1626	NM_139052	6877		NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
193245	chr6	29938171	29938330	+	0	NA	Intergenic	L1PA10|LINE|L1	-4220	NM_001242758	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
188421	chr5	154198031	154198930	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	7747	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
75359	chr15	65581401	65581600	+	0	NA	intron (NM_001207059, intron 10 of 10)	AluSx|SINE|Alu	29631	NM_001207058	81556		NM_030800	ENSG00000138614	INTS14	C15orf44|VWA9	integrator complex subunit 14	protein-coding
106659	chr18	23067251	23067630	+	0	NA	Intergenic	MER57B2|LTR|ERV1	-67124	NR_023359	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
71351	chr14	105468271	105468980	+	0	NA	intron (NM_001203258, intron 18 of 20)	intron (NM_001203258, intron 18 of 20)	-4320	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
236657	chrX	76096051	76096150	+	0	NA	Intergenic	L1PA7|LINE|L1	-76829	NM_001300888	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
79773	chr16	1371421	1371980	+	0	NA	intron (NM_001372107, intron 10 of 14)	intron (NM_001372107, intron 10 of 14)	7952	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
129902	chr2	73229421	73229680	+	0	NA	non-coding (NR_144358, exon 3 of 5)	non-coding (NR_144358, exon 3 of 5)	3689	NM_032319	84279		NM_032319	ENSG00000135617	PRADC1	C2orf7|PAP21	protease associated domain containing 1	protein-coding
94747	chr17	30807351	30807750	+	0	NA	intron (NM_015986, intron 1 of 7)	AluSq|SINE|Alu	17142	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
48440	chr12	9701251	9702900	+	0	NA	Intergenic	LTR1E|LTR|ERV1	31224	NM_001267701	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
33035	chr10	110816171	110816730	+	0	NA	intron (NM_001134363, intron 9 of 13)	intron (NM_001134363, intron 9 of 13)	54454	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
51699	chr12	53182751	53183200	+	0	NA	intron (NM_001004304, intron 2 of 6)	intron (NM_001004304, intron 2 of 6)	-2050	NM_001244705	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
55691	chr12	107671021	107671330	+	0	NA	Intergenic	Intergenic	-14557	NM_001317963	11137		NM_007062	ENSG00000136045	PWP1	IEF-SSP-9502|NCLB	PWP1 homolog, endonuclein	protein-coding
219778	chr8	81130221	81131800	+	0	NA	Intergenic	Intergenic	-18942	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
14921	chr1	147517721	147518000	+	0	NA	promoter-TSS (NR_038423)	promoter-TSS (NR_038423)	15	NR_038423	100289211		NR_038423	ENSG00000278811	LINC00624	-	long intergenic non-protein coding RNA 624	ncRNA
211743	chr7	107176651	107176950	+	0	NA	intron (NM_012257, intron 1 of 10)	intron (NM_012257, intron 1 of 10)	7797	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
236907	chrX	86046851	86048230	+	0	NA	promoter-TSS (NM_000390)	promoter-TSS (NM_000390)	18	NM_000390	1121		NM_000390	ENSG00000188419	CHM	DXS540|GGTA|HSD-32|REP-1|TCD	CHM Rab escort protein	protein-coding
106909	chr18	26040171	26040330	+	0	NA	intron (NM_005637, intron 5 of 9)	intron (NM_005637, intron 5 of 9)	50363	NM_001007559	6760		NM_005637	ENSG00000141380	SS18	SMARCL1|SSXT|SYT	SS18 subunit of BAF chromatin remodeling complex	protein-coding
121191	chr19	46521551	46521850	+	0	NA	intron (NM_001370551, intron 3 of 3)	MLT1D|LTR|ERVL-MaLR	-25833	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
113920	chr19	10705401	10705800	+	0	NA	intron (NM_031209, intron 3 of 9)	AluSz|SINE|Alu	4161	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
129652	chr2	70193871	70194230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3031	NR_145967	54980		NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
6446	chr1	28243701	28244500	+	0	NA	Intergenic	Intergenic	7976	NM_016311	93974		NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
145029	chr20	38073301	38073930	+	0	NA	intron (NM_021215, intron 6 of 6)	intron (NM_021215, intron 6 of 6)	39869	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
197294	chr6	71290701	71291230	+	0	NA	intron (NM_001324266, intron 1 of 6)	L2|LINE|L2	2154	NM_024576	79627		NM_024576	ENSG00000119900	OGFRL1	dJ331H24.1	opioid growth factor receptor like 1	protein-coding
69057	chr14	91878301	91878500	+	0	NA	intron (NM_001384161, intron 10 of 12)	intron (NM_001384161, intron 10 of 12)	-10864	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
79253	chr16	407501	407700	+	0	NA	intron (NM_020664, intron 4 of 8)	intron (NM_020664, intron 4 of 8)	5715	NM_020664	26063		NM_020664	ENSG00000242612	DECR2	PDCR|SDR17C1	2,4-dienoyl-CoA reductase 2	protein-coding
123171	chr19	52229601	52230030	+	0	NA	TTS (NM_014225)	TTS (NM_014225)	7795	NR_106859	102466984		NR_106859	ENSG00000274380	MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
22225	chr1	212564051	212564650	+	0	NA	promoter-TSS (NM_001030287)	promoter-TSS (NM_001030287)	-984	NM_001030287	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
90575	chr17	1529821	1530280	+	0	NA	intron (NM_006224, intron 10 of 11)	MIRb|SINE|MIR	13131	NR_028514	100306951		NR_028514	ENSG00000236618	PITPNA-AS1	-	PITPNA antisense RNA 1	ncRNA
176185	chr4	83450721	83451080	+	0	NA	TTS (NR_123737)	TTS (NR_123737)	4923	NM_001297759	113510		NM_133636	ENSG00000163312	HELQ	HEL308	helicase, POLQ like	protein-coding
154554	chr22	36220451	36220700	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	-15742	NM_145660	80832		NM_030643	ENSG00000100336	APOL4	APOL-IV|APOLIV	apolipoprotein L4	protein-coding
162796	chr3	49102671	49103030	+	0	NA	intron (NM_001272073, intron 5 of 23)	AluSq2|SINE|Alu	1907	NR_073590	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
26380	chr10	16816701	16818300	+	0	NA	promoter-TSS (NM_152724)	promoter-TSS (NM_152724)	-46	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
10856	chr1	77972851	77972950	+	0	NA	intron (NR_146539, intron 1 of 22)	intron (NR_146539, intron 1 of 22)	6172	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
77478	chr15	84534771	84535130	+	0	NA	intron (NR_003661, intron 5 of 5)	L1MEg|LINE|L1	-18103	NR_003246	374650		NM_198079		GOLGA6L5P	GOLGA6L5|GOLGA6L8	golgin A6 family like 5, pseudogene	pseudo
75157	chr15	64627301	64628150	+	0	NA	intron (NM_015042, intron 3 of 9)	AluJr|SINE|Alu	75556	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
129535	chr2	69741401	69742800	+	0	NA	promoter-TSS (NM_001153)	promoter-TSS (NM_001153)	-34	NM_001320702	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
204792	chr7	5622551	5622850	+	0	NA	3' UTR (NM_001377156, exon 18 of 18)	3' UTR (NM_001377156, exon 18 of 18)	29884	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
98798	chr17	48240871	48241630	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-53097	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
76088	chr15	72487401	72487600	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	13170	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
1593	chr1	3618771	3619630	+	0	NA	Intergenic	Intergenic	-5815	NM_182752	127262		NM_182752	ENSG00000158109	TPRG1L	FAM79A|SVAP30|TPRGL|h-mover|mover	tumor protein p63 regulated 1 like	protein-coding
47353	chr12	2003671	2005050	+	0	NA	promoter-TSS (NM_152640).2	promoter-TSS (NM_152640).2	97	NM_152640	196513		NM_152640	ENSG00000151065	DCP1B	DCP1	decapping mRNA 1B	protein-coding
83914	chr16	29011821	29012080	+	0	NA	Intergenic	Intergenic	26898	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
115473	chr19	15359701	15360950	+	0	NA	intron (NM_005858, intron 12 of 13)	MIRc|SINE|MIR	19462	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
38339	chr11	44562371	44562530	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-3213	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
160467	chr3	30435871	30436430	+	0	NA	Intergenic	L1ME3A|LINE|L1	-82718	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
114075	chr19	11099421	11099750	+	0	NA	intron (NM_001195800, intron 1 of 15)	intron (NM_001195800, intron 1 of 15)	-9926	NR_163945	115271120		NR_163945		LDLR-AS1	-	LDLR antisense RNA 1	ncRNA
7902	chr1	36703771	36704030	+	0	NA	Intergenic	Intergenic	-220586	NM_156039	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
165739	chr3	105688001	105688400	+	0	NA	intron (NM_001321806, intron 12 of 17)	intron (NM_001321806, intron 12 of 17)	179391	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
175337	chr4	68375701	68376400	+	0	NA	Intergenic	Intergenic	-25960	NM_001031732	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
135421	chr2	161141001	161141830	+	0	NA	intron (NM_133484, intron 1 of 3)	L1PA8|LINE|L1	4452	NM_004180	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
192949	chr6	27812551	27813100	+	0	NA	Intergenic	Intergenic	1952	NM_021066	8331		NM_021066	ENSG00000276368	H2AC14	H2A/E|H2AFE|HIST1H2AJ|dJ160A22.4	H2A clustered histone 14	protein-coding
44623	chr11	108834751	108834850	+	0	NA	intron (NM_004398, intron 13 of 17)	AluY|SINE|Alu	169731	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
159374	chr3	13347721	13348080	+	0	NA	intron (NM_024923, intron 20 of 39)	intron (NM_024923, intron 20 of 39)	-64643	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
6512	chr1	28520551	28520850	+	0	NA	intron (NM_001048195, intron 1 of 10)	intron (NM_001048195, intron 1 of 10)	2474	NM_001048194	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
57315	chr12	121675901	121676700	+	0	NA	Intergenic	AluJr|SINE|Alu	-3656	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
30370	chr10	78028951	78030250	+	0	NA	promoter-TSS (NM_007055)	promoter-TSS (NM_007055)	-85	NM_007055	11128		NM_007055	ENSG00000148606	POLR3A	ADDH|C160|HLD7|RPC1|RPC155|WDRTS|hRPC155	RNA polymerase III subunit A	protein-coding
130541	chr2	85662851	85663150	+	0	NA	intron (NM_000542, intron 8 of 10)	intron (NM_000542, intron 8 of 10)	5199	NM_001367281	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
195630	chr6	37843371	37843530	+	0	NA	intron (NM_021943, intron 1 of 5)	AluY|SINE|Alu	23723	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
85593	chr16	53511821	53512080	+	0	NA	Intergenic	Intergenic	-8646	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
202821	chr6	159691221	159691680	+	0	NA	3' UTR (NM_001322816, exon 2 of 2)	3' UTR (NM_001322816, exon 2 of 2)	1791	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
228822	chr9	112028651	112029150	+	0	NA	Intergenic	Intergenic	96800	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
124407	chr19	58412121	58412380	+	0	NA	intron (NM_173548, intron 2 of 3)	AluYb8|SINE|Alu	3576	NR_134461	201514		NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
226488	chr9	71760451	71761200	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	7688	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
65708	chr14	52793321	52794080	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-2093	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
184903	chr5	112877401	112877800	+	0	NA	3' UTR (NM_005669, exon 5 of 5)	3' UTR (NM_005669, exon 5 of 5)	16313	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
22672	chr1	223822651	223823150	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	23047	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
91474	chr17	4887071	4887630	+	0	NA	intron (NM_015716, intron 11 of 30)	intron (NM_015716, intron 11 of 30)	-12186	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
139356	chr2	219641571	219641830	+	0	NA	exon (NM_201574, exon 23 of 23)	exon (NM_201574, exon 23 of 23)	14070	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
73075	chr15	40925051	40925400	+	0	NA	Intergenic	MIRb|SINE|MIR	-4115	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
190945	chr6	2898151	2898850	+	0	NA	intron (NM_004155, intron 2 of 6)	intron (NM_004155, intron 2 of 6)	4809	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
165865	chr3	105987701	105988180	+	0	NA	Intergenic	L2a|LINE|L2	-118539	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
183380	chr5	77628051	77628580	+	0	NA	TTS (NM_032109)	TTS (NM_032109)	10398	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
184653	chr5	107534371	107534930	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	136287	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
226615	chr9	73170721	73171330	+	0	NA	TTS (NM_000700)	TTS (NM_000700)	19160	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
39733	chr11	61791101	61791300	+	0	NA	intron (NM_014206, intron 1 of 3)	AluSx|SINE|Alu	1361	NR_030342	693196		NR_030342	ENSG00000284108	MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
46205	chr11	123518621	123518880	+	0	NA	intron (NM_001330396, intron 2 of 19)	intron (NM_001330396, intron 2 of 19)	-6876	NM_001286563	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
110220	chr19	1757071	1757400	+	0	NA	intron (NM_001080488, intron 1 of 1)	CpG	3729	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
207770	chr7	50158071	50158230	+	0	NA	intron (NM_001161834, intron 8 of 8)	intron (NM_001161834, intron 8 of 8)	62267	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
3613	chr1	16362521	16362850	+	0	NA	Intergenic	AluJb|SINE|Alu	-4557	NR_073501	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
173258	chr4	7038221	7038680	+	0	NA	intron (NR_033828, intron 2 of 3)	AluJb|SINE|Alu	4551	NM_153376	257236		NM_153376	ENSG00000173013	CFAP184	CCDC96	cilia and flagella associated protein 184	protein-coding
145247	chr20	38941771	38941930	+	0	NA	intron (NM_030919, intron 1 of 3)	intron (NM_030919, intron 1 of 3)	15433	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
92676	chr17	12022951	12023250	+	0	NA	intron (NM_003010, intron 1 of 10)	intron (NM_003010, intron 1 of 10)	2223	NM_003010	6416		NM_003010	ENSG00000065559	MAP2K4	JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1	mitogen-activated protein kinase kinase 4	protein-coding
225016	chr9	33134401	33134600	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	25808	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
186456	chr5	137737201	137738180	+	0	NA	Intergenic	Intergenic	-1601	NM_017415	26249		NM_017415	ENSG00000146021	KLHL3	PHA2D	kelch like family member 3	protein-coding
87858	chr16	77192621	77192980	+	0	NA	intron (NM_001286639, intron 2 of 4)	intron (NM_001286639, intron 2 of 4)	1610	NM_001286639	22879		NM_014940	ENSG00000103111	MON1B	HSRG1|SAND2|SRG1	MON1 homolog B, secretory trafficking associated	protein-coding
192588	chr6	25965971	25966130	+	0	NA	intron (NM_006355, intron 2 of 7)	LTR23|LTR|ERV1	3248	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
78177	chr15	90538721	90539100	+	0	NA	intron (NM_001042574, intron 1 of 14)	MIRb|SINE|MIR	8987	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
162768	chr3	49069771	49069930	+	0	NA	intron (NM_001320580, intron 3 of 10)	Charlie6|DNA|hAT-Charlie	23782	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
65342	chr14	50260571	50260800	+	0	NA	intron (NM_024884, intron 9 of 9)	L1MEd|LINE|L1	-29107	NM_006939	6655		NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
165601	chr3	101672571	101672730	+	0	NA	intron (NM_014415, intron 1 of 10)	AluSx|SINE|Alu	-3780	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
179509	chr4	184733251	184734630	+	0	NA	intron (NM_024629, intron 1 of 12)	CpG	156	NM_024629	79682		NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
174738	chr4	43453071	43453500	+	0	NA	Intergenic	Intergenic	39258	NR_146993	105374436		NR_146993	ENSG00000248143	LINC02383	-	long intergenic non-protein coding RNA 2383	ncRNA
97680	chr17	44269871	44270030	+	0	NA	Intergenic	Intergenic	-1815	NM_000342	6521		NM_000342	ENSG00000004939	SLC4A1	AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR	solute carrier family 4 member 1 (Diego blood group)	protein-coding
145323	chr20	41086721	41087530	+	0	NA	intron (NM_003286, intron 8 of 20)	intron (NM_003286, intron 8 of 20)	-50418	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
10391	chr1	65060051	65060500	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	-1767	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1|mir-101-1	microRNA 101-1	ncRNA
64720	chr14	34347621	34348030	+	0	NA	Intergenic	MER57A-int|LTR|ERV1	114415	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
153064	chr22	23295601	23295800	+	0	NA	intron (NM_004327, intron 16 of 22)	intron (NM_004327, intron 16 of 22)	-30916	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
87151	chr16	69309171	69309880	+	0	NA	TTS (NM_006750)	TTS (NM_006750)	-1825	NM_013245	27183		NM_013245	ENSG00000132612	VPS4A	CIMDAG|SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
68186	chr14	76387201	76387430	+	0	NA	intron (NM_001379180, intron 1 of 6)	intron (NM_001379180, intron 1 of 6)	11178	NM_001379180	2103		NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR beta-2|ERR2|ERRb|ERRbeta2|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
134576	chr2	144236851	144237350	+	0	NA	intron (NM_001376308, intron 1 of 11)	L2a|LINE|L2	239	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
103818	chr17	79099401	79099600	+	0	NA	intron (NM_001082575, intron 9 of 14)	intron (NM_001082575, intron 9 of 14)	24676	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
146558	chr20	49993271	49993830	+	0	NA	Intergenic	L1MC4|LINE|L1	10570	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
180162	chr5	1408971	1409750	+	0	NA	intron (NM_001044, intron 10 of 14).2	intron (NM_001044, intron 10 of 14).2	-29287	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
23697	chr1	231603471	231604530	+	0	NA	intron (NR_034037, intron 1 of 1)	intron (NR_034037, intron 1 of 1)	8090	NR_034037	100287814		NR_034037	ENSG00000229228	LINC00582	SMILO	long intergenic non-protein coding RNA 582	ncRNA
183234	chr5	76379151	76380000	+	0	NA	Intergenic	Intergenic	-23710	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
236878	chrX	81957921	81958180	+	0	NA	Intergenic	Intergenic	755948	NM_003022	6451		NM_003022	ENSG00000131171	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate rich protein like	protein-coding
113452	chr19	9849821	9850080	+	0	NA	TTS (NR_038830)	TTS (NR_038830)	8225	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
67062	chr14	67835301	67835700	+	0	NA	intron (NM_133509, intron 4 of 10)	(TA)n|Simple_repeat|Simple_repeat	11908	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
3786	chr1	16702951	16703800	+	0	NA	intron (NR_026567, intron 5 of 10)	intron (NR_026567, intron 5 of 10)	16782	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
156627	chr22	41594671	41595230	+	0	NA	Intergenic	AluSg|SINE|Alu	-5110	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
165951	chr3	107661351	107661980	+	0	NA	intron (NM_020235, intron 3 of 16)	intron (NM_020235, intron 3 of 16)	138703	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
184754	chr5	109857051	109858500	+	0	NA	intron (NM_002372, intron 20 of 21)	intron (NM_002372, intron 20 of 21)	-25407	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
47634	chr12	6201121	6201380	+	0	NA	intron (NM_001769, intron 1 of 7)	intron (NM_001769, intron 1 of 7)	850	NM_001769	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
16093	chr1	153548201	153548400	+	0	NA	intron (NM_002960, intron 2 of 2)	intron (NM_002960, intron 2 of 2)	958	NM_002960	6274		NM_002960	ENSG00000188015	S100A3	S100E	S100 calcium binding protein A3	protein-coding
160838	chr3	33067171	33067930	+	0	NA	intron (NM_001135602, intron 2 of 12)	AluJr|SINE|Alu	29282	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
124922	chr2	8535721	8536330	+	0	NA	Intergenic	L3b|LINE|CR1	47767	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
119383	chr19	40220821	40221180	+	0	NA	Intergenic	AluSg|SINE|Alu	-2601	NM_152479	148014		NM_152479	ENSG00000174521	TTC9B	-	tetratricopeptide repeat domain 9B	protein-coding
38631	chr11	46352121	46352980	+	0	NA	intron (NM_001199266, intron 1 of 30)	intron (NM_001199266, intron 1 of 30)	5087	NM_001199268	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
64637	chr14	31209871	31211000	+	0	NA	Intergenic	Intergenic	-2642	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
190671	chr5	181260501	181261500	+	0	NA	promoter-TSS (NR_102759)	promoter-TSS (NR_102759)	143	NM_001346048	84851		NM_032765	ENSG00000183718	TRIM52	RNF102	tripartite motif containing 52	protein-coding
39498	chr11	61027341	61027940	+	0	NA	Intergenic	Intergenic	55960	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
33778	chr10	122982321	122982580	+	0	NA	intron (NM_001363531, intron 1 of 5)	intron (NM_001363531, intron 1 of 5)	2049	NM_153336	118672		NM_153336	ENSG00000179988	PSTK	C10orf89	phosphoseryl-tRNA kinase	protein-coding
40265	chr11	63770601	63771150	+	0	NA	Intergenic	MIRc|SINE|MIR	-2100	NM_001144936	65998		NM_023941	ENSG00000188070	ZFTA	C11orf95	zinc finger translocation associated	protein-coding
73820	chr15	48965321	48965580	+	0	NA	Intergenic	Intergenic	-1531	NM_203349	399694		NM_203349	ENSG00000185634	SHC4	RaLP|SHCD	SHC adaptor protein 4	protein-coding
58666	chr12	132532151	132532830	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	27084	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
181164	chr5	39048821	39049080	+	0	NA	intron (NM_001285439, intron 2 of 38)	L1MEd|LINE|L1	25449	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
39105	chr11	48052171	48052350	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-44522	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
105280	chr17	82465021	82465450	+	0	NA	intron (NM_031968, intron 3 of 11)	MSTA|LTR|ERVL-MaLR	6494	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
143935	chr20	32760721	32761250	+	0	NA	Intergenic	Intergenic	-1400	NM_175848	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
112893	chr19	7631401	7631600	+	0	NA	TTS (NM_001271830)	TTS (NM_001271830)	1492	NM_001271830	126006		NM_174895	ENSG00000174788	PCP2	GPSM4|PCD5	Purkinje cell protein 2	protein-coding
155484	chr22	38501721	38502250	+	0	NA	intron (NM_006386, intron 1 of 12)	intron (NM_006386, intron 1 of 12)	4326	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
152813	chr22	21859221	21859480	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSg4|SINE|Alu	8295	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
4923	chr1	23907771	23908200	+	0	NA	intron (NM_001841, intron 1 of 1)	AluSc5|SINE|Alu	5377	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
40290	chr11	63855771	63857000	+	0	NA	intron (NM_004954, intron 1 of 16)	(TT)n|Simple_repeat|Simple_repeat	17275	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
25084	chr10	3866071	3866830	+	0	NA	Intergenic	Intergenic	32500	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
167825	chr3	133596751	133596850	+	0	NA	Intergenic	LTR32|LTR|ERVL	22366	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
84097	chr16	29626371	29628480	+	0	NA	Intergenic	Intergenic	-13708	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
62809	chr13	109753101	109753500	+	0	NA	3' UTR (NM_003749, exon 2 of 2)	3' UTR (NM_003749, exon 2 of 2)	25026	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
48942	chr12	12724701	12726600	+	0	NA	promoter-TSS (NM_001130415)	promoter-TSS (NM_001130415)	-267	NM_001130415	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
150198	chr21	39351171	39351480	+	0	NA	Intergenic	L1ME3A|LINE|L1	-2237	NM_004965	3150		NM_004965	ENSG00000205581	HMGN1	HMG14	high mobility group nucleosome binding domain 1	protein-coding
67973	chr14	74886371	74886930	+	0	NA	intron (NM_001244883, intron 3 of 6)	intron (NM_001244883, intron 3 of 6)	4734	NM_001244883	1743		NM_001933	ENSG00000119689	DLST	DLTS|KGD2|PGL7|PPGL7	dihydrolipoamide S-succinyltransferase	protein-coding
110118	chr19	1569501	1569930	+	0	NA	Intergenic	Intergenic	-1390	NM_001174118	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
147363	chr20	58396371	58396530	+	0	NA	intron (NM_001195677, intron 1 of 2)	intron (NM_001195677, intron 1 of 2)	7221	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
172376	chr4	1757851	1757950	+	0	NA	Intergenic	Intergenic	-35393	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
60145	chr13	39779101	39779700	+	0	NA	intron (NM_001145079, intron 18 of 18)	intron (NM_001145079, intron 18 of 18)	-115265	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
224029	chr9	3473371	3473730	+	0	NA	intron (NM_001282116, intron 1 of 16)	Tigger13a|DNA|TcMar-Tigger	15884	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
239165	chrY	11993851	11994030	+	0	NA	Intergenic	L1PA2|LINE|L1	427650	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
164123	chr3	56703621	56703880	+	0	NA	Intergenic	AluJr4|SINE|Alu	-20485	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
55197	chr12	101642471	101642630	+	0	NA	exon (NM_002465, exon 11 of 32)	exon (NM_002465, exon 11 of 32)	47579	NM_002465	4604		NM_002465	ENSG00000196091	MYBPC1	CMYP16|LCCS4|MYBPCC|MYBPCS|MYOTREM|ssMyBP-C	myosin binding protein C1	protein-coding
33941	chr10	124620471	124620630	+	0	NA	3' UTR (NM_014661, exon 5 of 5)	3' UTR (NM_014661, exon 5 of 5)	-83478	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
182111	chr5	56070921	56071750	+	0	NA	Intergenic	Intergenic	76168	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
7733	chr1	36127471	36127630	+	0	NA	Intergenic	Intergenic	-2328	NM_001294347	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
204568	chr7	5226921	5227180	+	0	NA	intron (NM_015610, intron 9 of 12)	intron (NM_015610, intron 9 of 12)	12781	NM_001033520	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
134772	chr2	147364671	147365100	+	0	NA	Intergenic	Intergenic	-479632	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
222270	chr8	133290601	133292280	+	0	NA	intron (NM_001374844, intron 1 of 15)	intron (NM_001374844, intron 1 of 15)	5250	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
105334	chr17	82601201	82601600	+	0	NA	exon (NM_004514, exon 9 of 9)	exon (NM_004514, exon 9 of 9)	47044	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
106866	chr18	24116771	24117130	+	0	NA	intron (NM_001135993, intron 7 of 13)	AluJb|SINE|Alu	3623	NM_001292030	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
56574	chr12	117155121	117155830	+	0	NA	intron (NM_015002, intron 11 of 11)	intron (NM_015002, intron 11 of 11)	34995	NM_015002	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
43632	chr11	83287521	83288130	+	0	NA	Intergenic	AluJo|SINE|Alu	-1418	NM_001286119	60492		NM_021825	ENSG00000137500	CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
8041	chr1	38555771	38556430	+	0	NA	Intergenic	Intergenic	80904	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
63064	chr13	113153001	113153300	+	0	NA	Intergenic	CpG	-5498	NM_003891	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
169915	chr3	177724251	177724550	+	0	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-92465	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
105001	chr17	82021071	82024680	+	0	NA	promoter-TSS (NM_144998)	promoter-TSS (NM_144998)	3	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
215500	chr7	158609471	158609830	+	0	NA	Intergenic	Intergenic	18034	NR_049893	100847032		NR_049893	ENSG00000265598	MIR5707	-	microRNA 5707	ncRNA
80997	chr16	4077201	4077600	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	39042	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
151705	chr22	17368971	17369430	+	0	NA	promoter-TSS (NM_001290047)	promoter-TSS (NM_001290047)	-260	NM_001290047	27443		NM_031413	ENSG00000099954	CECR2	-	CECR2 histone acetyl-lysine reader	protein-coding
59293	chr13	24260701	24260900	+	0	NA	intron (NM_153023, intron 3 of 11)	Tigger13a|DNA|TcMar-Tigger	-6361	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
197972	chr6	90001371	90001600	+	0	NA	intron (NM_021813, intron 6 of 8)	7SK|RNA|RNA	107016	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
46929	chr11	134330071	134330250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1714	NM_138342	89944		NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	galactosidase beta 1 like 2	protein-coding
14174	chr1	121401501	121402000	+	0	NA	Intergenic	L1PA3|LINE|L1	-3845	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
84129	chr16	29699701	29699900	+	0	NA	Intergenic	Intergenic	20620	NR_134536	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
219982	chr8	89833601	89834050	+	0	NA	Intergenic	Intergenic	-68043	NM_004337	734		NM_004337	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
150166	chr21	39138251	39138350	+	0	NA	Intergenic	Intergenic	45151	NM_003720	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
224323	chr9	6714151	6714600	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-6488	NM_001146696	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
209805	chr7	87879051	87879230	+	0	NA	intron (NM_001318060, intron 2 of 10)	AluSx|SINE|Alu	2647	NM_006716	10926		NM_006716	ENSG00000006634	DBF4	ASK|CHIF|DBF4A|ZDBF1	DBF4-CDC7 kinase regulatory subunit	protein-coding
98433	chr17	46820851	46821530	+	0	NA	Intergenic	Intergenic	-2498	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
144016	chr20	33441351	33441850	+	0	NA	intron (NM_003098, intron 1 of 7)	intron (NM_003098, intron 1 of 7)	2163	NM_003098	6640		NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	syntrophin alpha 1	protein-coding
181505	chr5	43017391	43019200	+	0	NA	non-coding (NR_034086, exon 1 of 2)	non-coding (NR_034086, exon 1 of 2)	516	NR_034086	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
61642	chr13	73870101	73870550	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	263604	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
224247	chr9	5874301	5874900	+	0	NA	Intergenic	MER21A|LTR|ERVL	-16289	NM_005511	2315		NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
148956	chr21	10655371	10655730	+	0	NA	Intergenic	(TCCATTCCAT)n|Simple_repeat|Simple_repeat	133967	NM_199259	7179		NM_199259	ENSG00000274391	TPTE	CT44|PTEN2|TPTE1	transmembrane phosphatase with tensin homology	protein-coding
194646	chr6	33597021	33597430	+	0	NA	Intergenic	AluJb|SINE|Alu	-3887	NR_027908	401253		NM_207497	ENSG00000197251	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
162592	chr3	48687121	48687630	+	0	NA	TTS (NM_001005909)	TTS (NM_001005909)	-1460	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
147069	chr20	53739821	53740630	+	0	NA	Intergenic	Intergenic	131871	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
219213	chr8	66674351	66675150	+	0	NA	intron (NR_161217, intron 1 of 1)	Charlie29a|DNA|hAT-Charlie	7154	NM_001204173	100533105		NM_001204173	ENSG00000288602	C8orf44-SGK3	-	C8orf44-SGK3 readthrough	protein-coding
236950	chrX	100929471	100929850	+	0	NA	promoter-TSS (NM_212559)	promoter-TSS (NM_212559)	-743	NM_212559	402415		NM_212559	ENSG00000182489	XKRX	XKR2|XPLAC|XRG2	XK related X-linked	protein-coding
203058	chr6	166243071	166243430	+	0	NA	non-coding (NR_125862, exon 2 of 5)	non-coding (NR_125862, exon 2 of 5)	6281	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
116064	chr19	17229021	17229280	+	0	NA	TTS (NM_024578)	TTS (NM_024578)	2924	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
27873	chr10	41860951	41861130	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	507005	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
106898	chr18	24726851	24726950	+	0	NA	intron (NR_134604, intron 2 of 2)	intron (NR_134604, intron 2 of 2)	1119	NR_134604	105372028		NR_134604		LOC105372028	-	uncharacterized LOC105372028	ncRNA
10699	chr1	74771971	74772280	+	0	NA	Intergenic	Intergenic	-38717	NM_001130042	1429		NM_001889	ENSG00000116791	CRYZ	-	crystallin zeta	protein-coding
12051	chr1	98306651	98307100	+	0	NA	Intergenic	HAL1|LINE|L1	96164	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
204596	chr7	5303651	5303750	+	0	NA	3' UTR (NM_001300847, exon 11 of 11)	3' UTR (NM_001300847, exon 11 of 11)	20757	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
156452	chr22	41247751	41248430	+	0	NA	intron (NM_001278651, intron 16 of 16)	intron (NM_001278651, intron 16 of 16)	4960	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
191025	chr6	3126151	3127000	+	0	NA	intron (NM_004332, intron 2 of 6)	intron (NM_004332, intron 2 of 6)	7864	NM_004332	670		NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase like	protein-coding
113627	chr19	10324351	10324950	+	0	NA	intron (NM_133452, intron 3 of 12)	AluSz|SINE|Alu	-8635	NM_001031734	112812		NM_080665	ENSG00000267673	FDX2	FDX1L|MEOAL	ferredoxin 2	protein-coding
148606	chr21	5127721	5129180	+	0	NA	promoter-TSS (NM_001320384)	promoter-TSS (NM_001320384)	-81	NM_001363758	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
205310	chr7	12202871	12203230	+	0	NA	Intergenic	L1MC3|LINE|L1	-8244	NM_018374	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
36785	chr11	9458971	9459130	+	0	NA	TTS (NR_036539)	TTS (NR_036539)	1648	NR_036539	644656		NR_036539	ENSG00000268403	LOC644656	-	uncharacterized LOC644656	ncRNA
136106	chr2	173925701	173925900	+	0	NA	intron (NM_001172712, intron 4 of 6)	intron (NM_001172712, intron 4 of 6)	38080	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
222543	chr8	140593121	140594100	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	42023	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
236600	chrX	73977371	73978130	+	0	NA	intron (NR_024582, intron 2 of 4)	intron (NR_024582, intron 2 of 4)	33426	NR_024582	554203		NR_024582	ENSG00000225470	JPX	DCBALD06|ENOX|LINC00183|NCRNA00183	JPX transcript, XIST activator	ncRNA
125856	chr2	24495171	24495430	+	0	NA	intron (NM_001362954, intron 1 of 23)	intron (NM_001362954, intron 1 of 23)	3423	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
30529	chr10	79367771	79368080	+	0	NA	Intergenic	L1MB8|LINE|L1	20456	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
137461	chr2	197040451	197040750	+	0	NA	intron (NM_001195144, intron 16 of 27)	AluSz|SINE|Alu	-113893	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
216267	chr8	12451801	12452280	+	0	NA	intron (NR_040092, intron 4 of 5)	intron (NR_040092, intron 4 of 5)	15027	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
175441	chr4	71185101	71185330	+	0	NA	Intergenic	Intergenic	-1550	NM_001134742	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
20775	chr1	201016471	201016950	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	7004	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
81800	chr16	11541621	11542300	+	0	NA	Intergenic	Intergenic	-14713	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
66550	chr14	61925051	61925150	+	0	NA	intron (NM_001367657, intron 2 of 6)	MLT1J|LTR|ERVL-MaLR	-2595	NM_001367663	83851		NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r	synaptotagmin 16	protein-coding
20614	chr1	198938971	198939130	+	0	NA	Intergenic	Intergenic	-1621	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
78869	chr15	100570821	100571080	+	0	NA	intron (NR_148017, intron 6 of 6)	intron (NR_148017, intron 6 of 6)	-11667	NR_073405	441733		NR_073405		PRKXP1	-	PRKX pseudogene 1	pseudo
142167	chr20	2840151	2841500	+	0	NA	promoter-TSS (NM_022575)	promoter-TSS (NM_022575)	80	NM_022575	64601		NM_022575	ENSG00000215305	VPS16	DYT30|hVPS16	VPS16 core subunit of CORVET and HOPS complexes	protein-coding
135233	chr2	159456621	159457080	+	0	NA	intron (NM_001289975, intron 3 of 35)	intron (NM_001289975, intron 3 of 35)	-158444	NR_110588	643072		NR_110587	ENSG00000224152	BAZ2B-AS1	lnc-BAZ2B	BAZ2B antisense RNA 1	ncRNA
119089	chr19	39258301	39258900	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-9744	NM_001276254	101180976		NM_001276254	ENSG00000272395	IFNL4	IFNAN	interferon lambda 4 (gene/pseudogene)	protein-coding
87912	chr16	79093251	79094100	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	507062	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
22909	chr1	225891051	225891150	+	0	NA	Intergenic	Intergenic	-1954	NM_020997	10637		NM_020997	ENSG00000243709	LEFTY1	LEFTB|LEFTYB	left-right determination factor 1	protein-coding
239504	chrY	56763901	56764630	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-189990	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
194990	chr6	35384251	35385080	+	0	NA	intron (NM_001171819, intron 2 of 6)	SVA_F|Retroposon|SVA	42107	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
190358	chr5	179704351	179704800	+	0	NA	intron (NM_001363993, intron 2 of 15)	AluSx1|SINE|Alu	5608	NM_001746	821		NM_001746	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
81461	chr16	8891351	8892600	+	0	NA	TTS (NM_001321858)	TTS (NM_001321858)	-22963	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
170521	chr3	186566671	186568080	+	0	NA	promoter-TSS (NM_018138)	promoter-TSS (NM_018138)	-36	NM_018138	55171		NM_018138	ENSG00000113838	TBCCD1	-	TBCC domain containing 1	protein-coding
85469	chr16	50680821	50682100	+	0	NA	promoter-TSS (NM_153337)	promoter-TSS (NM_153337)	-148	NM_001144972	124460		NM_153337	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
223695	chr8	144427151	144427890	+	0	NA	intron (NM_016208, intron 1 of 9)	intron (NM_016208, intron 1 of 9)	1028	NM_016208	51160		NM_016208	ENSG00000160948	VPS28	CIIA	VPS28 subunit of ESCRT-I	protein-coding
55029	chr12	96386021	96386650	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	14104	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
51021	chr12	49740351	49740450	+	0	NA	Intergenic	LTR2|LTR|ERV1	-1157	NM_003217	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
124044	chr19	55522651	55522750	+	0	NA	Intergenic	AluSx1|SINE|Alu	14433	NM_001370096	646643		NM_001101401	ENSG00000187550	SBK2	SGK069	SH3 domain binding kinase family member 2	protein-coding
196443	chr6	43494751	43496000	+	0	NA	intron (NM_001350565, intron 2 of 10)	intron (NM_001350565, intron 2 of 10)	5617	NM_001350567	93643		NM_080604	ENSG00000137221	TJAP1	PILT|TJP4	tight junction associated protein 1	protein-coding
167547	chr3	129340171	129340330	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-23964	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
209661	chr7	78019401	78020600	+	0	NA	intron (NM_012301, intron 21 of 21)	CpG	179870	NM_001127359	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
137790	chr2	199704571	199704830	+	0	NA	Intergenic	L1MC4|LINE|L1	96632	NR_110270	101927641		NR_110270	ENSG00000238217	LINC01877	-	long intergenic non-protein coding RNA 1877	ncRNA
28598	chr10	55631171	55631330	+	0	NA	Intergenic	CpG	-3308	NM_001354404	65217		NM_033056	ENSG00000150275	PCDH15	CDHR15|DFNB23|USH1F	protocadherin related 15	protein-coding
174529	chr4	40182021	40182280	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-8930	NM_001278368	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
175712	chr4	77167421	77167680	+	0	NA	3' UTR (NM_004354, exon 8 of 8)	3' UTR (NM_004354, exon 8 of 8)	10343	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
12826	chr1	110030771	110031630	+	0	NA	promoter-TSS (NM_001270768)	promoter-TSS (NM_001270768)	-377	NM_001270768	85369		NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
47018	chr12	364221	365080	+	0	NA	intron (NM_001042603, intron 4 of 27)	AluY|SINE|Alu	24670	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
124450	chr19	58511601	58512350	+	0	NA	promoter-TSS (NM_012254)	promoter-TSS (NM_012254)	17	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
3737	chr1	16634021	16634830	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-3519	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
20255	chr1	193538751	193539130	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	234195	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
187813	chr5	146609571	146609930	+	0	NA	intron (NR_073526, intron 6 of 8)	L1HS|LINE|L1	-93560	NM_194251	134391		NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|GPCR-2037|PGR7	G protein-coupled receptor 151	protein-coding
228478	chr9	99905101	99905450	+	0	NA	intron (NR_038853, intron 1 of 2)	AluSc8|SINE|Alu	1326	NR_038853	441461		NR_038853		STX17-DT	STX17-AS1	STX17 divergent transcript	ncRNA
217941	chr8	38133971	38134330	+	0	NA	intron (NM_001261832, intron 13 of 14)	SVA_C|Retroposon|SVA	16802	NM_000349	6770		NM_000349	ENSG00000147465	STAR	STARD1	steroidogenic acute regulatory protein	protein-coding
221675	chr8	126301151	126301250	+	0	NA	Intergenic	Intergenic	-24295	NR_125421	101927657		NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
132590	chr2	107833251	107833750	+	0	NA	intron (NM_182588, intron 1 of 22)	MIRb|SINE|MIR	6608	NM_182588	285190		NM_182588	ENSG00000196862	RGPD4	RGP4	RANBP2 like and GRIP domain containing 4	protein-coding
130416	chr2	85344371	85344750	+	0	NA	intron (NM_017750, intron 7 of 10)	intron (NM_017750, intron 7 of 10)	9968	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
109235	chr19	501571	502450	+	0	NA	intron (NM_130760, intron 4 of 4)	intron (NM_130760, intron 4 of 4)	-5487	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
108925	chr18	79453921	79454250	+	0	NA	intron (NM_172389, intron 6 of 9)	intron (NM_172389, intron 6 of 9)	53786	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
214487	chr7	150408371	150408530	+	0	NA	non-coding (NR_027237, exon 2 of 3)	non-coding (NR_027237, exon 2 of 3)	2698	NR_027237	728743		NM_001080852	ENSG00000284691	LOC728743	-	zinc finger domain-containing protein LOC728743	protein-coding
162747	chr3	49051201	49051600	+	0	NA	intron (NM_001320580, intron 4 of 10)	L2|LINE|L2	-22002	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
90603	chr17	1625721	1625980	+	0	NA	intron (NM_152346, intron 2 of 13).2	intron (NM_152346, intron 2 of 13).2	2566	NM_001321365	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
172349	chr4	1716271	1716750	+	0	NA	3' UTR (NM_001127266, exon 4 of 4)	3' UTR (NM_001127266, exon 4 of 4)	-4191	NM_001306074	7884		NM_006527	ENSG00000163950	SLBP	HBP	stem-loop histone mRNA binding protein	protein-coding
24547	chr1	244857951	244858050	+	0	NA	intron (NM_031844, intron 7 of 13)	intron (NM_031844, intron 7 of 13)	-3783	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
145268	chr20	40882201	40882600	+	0	NA	Intergenic	Intergenic	-98313	NR_145524	100128988		NR_145524		LOC100128988	-	uncharacterized LOC100128988	ncRNA
227644	chr9	92956201	92956400	+	0	NA	intron (NM_001083536, intron 1 of 17)	L1MD1|LINE|L1	-7661	NM_001286993	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
195937	chr6	41923051	41923350	+	0	NA	intron (NM_004053, intron 1 of 6)	AluJo|SINE|Alu	1701	NM_004053	705		NM_004053	ENSG00000112578	BYSL	BYSTIN|Enp1	bystin like	protein-coding
167792	chr3	133480201	133480400	+	0	NA	intron (NR_135276, intron 1 of 4)	intron (NR_135276, intron 1 of 4)	10846	NR_135277	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
9501	chr1	51284651	51285230	+	0	NA	Intergenic	Intergenic	13021	NM_001297666	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
8113	chr1	39205101	39205550	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	121158	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
158063	chr22	49954121	49954650	+	0	NA	Intergenic	Intergenic	-6387	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
147110	chr20	53915221	53916750	+	0	NA	Intergenic	Intergenic	-40276	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
87657	chr16	74585221	74585550	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluSx3|SINE|Alu	21729	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
189923	chr5	177374421	177374730	+	0	NA	Intergenic	Intergenic	-9859	NM_001167579	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
23191	chr1	226956521	226956980	+	0	NA	intron (NM_020247, intron 1 of 14)	intron (NM_020247, intron 1 of 14)	16456	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
73569	chr15	44430401	44430600	+	0	NA	intron (NM_016396, intron 1 of 12)	AluJr|SINE|Alu	2871	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
34686	chr10	133376201	133376980	+	0	NA	Intergenic	Intergenic	-2672	NM_207127	196743		NM_152911	ENSG00000148832	PAOX	PAO	polyamine oxidase	protein-coding
102403	chr17	75593451	75593750	+	0	NA	intron (NM_001309242, intron 8 of 62)	AluSz|SINE|Alu	5542	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
231818	chr9	132481171	132481330	+	0	NA	intron (NM_001282957, intron 1 of 5)	LTR55|LTR|ERVL?	71039	NM_207417	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
188233	chr5	150931951	150932050	+	0	NA	non-coding (NR_026867, exon 5 of 5)	non-coding (NR_026867, exon 5 of 5)	14584	NR_026867	134466		NR_026867	ENSG00000291115	ZNF300P1	-	zinc finger protein 300 pseudogene 1	pseudo
51856	chr12	53474671	53475280	+	0	NA	intron (NM_031989, intron 14 of 14)	(CCT)n|Simple_repeat|Simple_repeat	10507	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
227743	chr9	93084371	93084530	+	0	NA	intron (NM_001287005, intron 5 of 5)	intron (NM_001287005, intron 5 of 5)	-11767	NM_032310	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
181932	chr5	54902821	54903170	+	0	NA	Intergenic	Intergenic	82598	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
140235	chr2	231784821	231785080	+	0	NA	intron (NM_001282949, intron 1 of 5)	AluSx|SINE|Alu	-1433	NM_001282952	64708		NM_022730	ENSG00000144524	COPS7B	CSN7B|SGN7b	COP9 signalosome subunit 7B	protein-coding
73738	chr15	45203201	45203400	+	0	NA	Intergenic	Intergenic	-2184	NM_138356	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
210642	chr7	100470471	100470730	+	0	NA	intron (NM_001303043, intron 3 of 4)	AluSq2|SINE|Alu	-6340	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
157111	chr22	42639951	42640350	+	0	NA	exon (NM_001165877, exon 1 of 1)	exon (NM_001165877, exon 1 of 1)	451	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
117191	chr19	19366621	19367300	+	0	NA	Intergenic	Intergenic	-18883	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
238888	chrX	154568971	154569450	+	0	NA	Intergenic	MER67B|LTR|ERV1	-2038	NR_027402	286967		NM_173168	ENSG00000272681	FAM223B	CXorf52|CXorf52B|LINC00204B|NCRNA00204B	family with sequence similarity 223 member B	ncRNA
84327	chr16	30178651	30178750	+	0	NA	Intergenic	MIRb|SINE|MIR	-4710	NM_001193333	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
226153	chr9	63780671	63781940	+	0	NA	Intergenic	TAR1|Satellite|telo	-31636	NR_146625	203274		NR_146625		LINC00537	-	long intergenic non-protein coding RNA 537	ncRNA
23898	chr1	234970101	234970530	+	0	NA	Intergenic	Intergenic	-6316	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
166059	chr3	108825521	108826130	+	0	NA	intron (NM_001317747, intron 1 of 4)	intron (NM_001317747, intron 1 of 4)	3039	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
184115	chr5	94524901	94525400	+	0	NA	intron (NM_001385729, intron 4 of 5)	intron (NM_001385729, intron 4 of 5)	92975	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
235803	chrX	49188071	49188680	+	0	NA	3' UTR (NM_003179, exon 7 of 7)	3' UTR (NM_003179, exon 7 of 7)	-2002	NM_006150	4007		NM_006150	ENSG00000012211	PRICKLE3	LMO6|LOAM|LOAS|Pk3	prickle planar cell polarity protein 3	protein-coding
5935	chr1	26868871	26869030	+	0	NA	Intergenic	AluSz6|SINE|Alu	5801	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
16116	chr1	153642401	153642600	+	0	NA	intron (NM_001317077, intron 4 of 4)	intron (NM_001317077, intron 4 of 4)	-8139	NM_001024210	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
78671	chr15	95284751	95285180	+	0	NA	intron (NR_034095, intron 3 of 3)	intron (NR_034095, intron 3 of 3)	42135	NR_034095	400456		NR_034095	ENSG00000248441	LETR1	LINC01197	lymphatic endothelial transcriptional regulator lncRNA 1	ncRNA
29210	chr10	68989951	68990050	+	0	NA	intron (NM_015634, intron 1 of 6)	intron (NM_015634, intron 1 of 6)	1197	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
19546	chr1	179002601	179003330	+	0	NA	Intergenic	Intergenic	-22839	NM_001324310	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
146921	chr20	51623951	51624550	+	0	NA	intron (NM_006045, intron 18 of 27)	intron (NM_006045, intron 18 of 27)	-61411	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
30860	chr10	86688021	86688830	+	0	NA	intron (NM_001171610, intron 6 of 13)	intron (NM_001171610, intron 6 of 13)	19861	NM_001080116	11155		NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
236422	chrX	71287301	71288450	+	0	NA	intron (NM_001145408, intron 3 of 12)	AluJo|SINE|Alu	4240	NM_001145408	4841		NM_007363	ENSG00000147140	NONO	MRXS34|NMT55|NRB54|P54|P54NRB|PPP1R114	non-POU domain containing octamer binding	protein-coding
178175	chr4	142377351	142378530	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	25193	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
17959	chr1	160429601	160430830	+	0	NA	Intergenic	MamRep1527|LTR|LTR	29651	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
158369	chr22	50472801	50473620	+	0	NA	intron (NM_002972, intron 1 of 40)	intron (NM_002972, intron 1 of 40)	1825	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
71659	chr14	106848321	106848600	+	0	NA	Intergenic	L1PBb|LINE|L1	2539	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
75651	chr15	67520701	67522330	+	0	NA	promoter-TSS (NR_040055)	promoter-TSS (NR_040055)	329	NR_040051	100506686		NR_040051	ENSG00000259673	IQCH-AS1	-	IQCH antisense RNA 1	ncRNA
165528	chr3	100510121	100510200	+	0	NA	intron (NM_018004, intron 1 of 5)	L1PA3|LINE|L1	17541	NM_018004	55076		NM_018004	ENSG00000181458	TMEM45A	DERP7|DNAPTP4	transmembrane protein 45A	protein-coding
43415	chr11	77405451	77406380	+	0	NA	intron (NM_001376280, intron 1 of 16)	L2a|LINE|L2	6056	NM_001376286	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
94969	chr17	32221071	32221530	+	0	NA	intron (NR_110083, intron 20 of 20)	AluSc|SINE|Alu	-44532	NM_001330181	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
78520	chr15	92946071	92946230	+	0	NA	exon (NM_001271, exon 12 of 39)	exon (NM_001271, exon 12 of 39)	41751	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
54516	chr12	92109371	92110130	+	0	NA	intron (NR_132341, intron 1 of 4)	AluJb|SINE|Alu	31963	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
63998	chr14	22489751	22490050	+	0	NA	Intergenic	Intergenic	-6941	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
127629	chr2	43125051	43126100	+	0	NA	Intergenic	Intergenic	-23130	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
49694	chr12	30844371	30844850	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	48929	NR_040245	100287314		NR_040245		LINC00941	lncIAPF|lncRNA-MUF	long intergenic non-protein coding RNA 941	ncRNA
142239	chr20	3117921	3118750	+	0	NA	intron (NM_001267584, intron 3 of 4)	AluSx1|SINE|Alu	11424	NR_038395	100134015		NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
55399	chr12	104467371	104468330	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	10902	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
129427	chr2	69422971	69423150	+	0	NA	intron (NM_001002756, intron 2 of 6)	AluJb|SINE|Alu	14375	NM_015700	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
51391	chr12	51949521	51949780	+	0	NA	Intergenic	Intergenic	-2049	NM_020328	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
30401	chr10	78520921	78521180	+	0	NA	Intergenic	L2c|LINE|L2	253708	NR_073447	414243		NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
205163	chr7	7257151	7257450	+	0	NA	intron (NR_108073, intron 1 of 3)	intron (NR_108073, intron 1 of 3)	2146	NR_108073	101927354		NR_108073	ENSG00000230825	LINC03016	-	long intergenic non-protein coding RNA 3016	ncRNA
30895	chr10	86969921	86970260	+	0	NA	promoter-TSS (NM_133447)	promoter-TSS (NM_133447)	-246	NM_133447	119385		NM_133447	ENSG00000271880	AGAP11	-	ArfGAP with GTPase domain, ankyrin repeat and PH domain 11	ncRNA
22136	chr1	211935121	211935730	+	0	NA	Intergenic	Intergenic	-100128	NM_001286230	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
9068	chr1	44832121	44833000	+	0	NA	intron (NM_001166292, intron 2 of 22)	intron (NM_001166292, intron 2 of 22)	10384	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
166353	chr3	112982901	112983300	+	0	NA	Intergenic	L1MEh|LINE|L1	-7853	NM_138485	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
137338	chr2	196137951	196138050	+	0	NA	intron (NM_004226, intron 7 of 7)	MIR|SINE|MIR	33578	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
21532	chr1	205823421	205823680	+	0	NA	Intergenic	L1PA16|LINE|L1	-10352	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
89662	chr16	89362251	89362850	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	42098	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
216139	chr8	11466001	11467200	+	0	NA	intron (NM_053279, intron 1 of 2)	CpG	153	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
160448	chr3	29171651	29171950	+	0	NA	Intergenic	Intergenic	109139	NR_109804	100873979		NR_109804		RBMS3-AS3	-	RBMS3 antisense RNA 3	ncRNA
53453	chr12	65554821	65555080	+	0	NA	intron (NR_135033, intron 2 of 2)	L1PA3|LINE|L1	2361	NR_135033	105369187		NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
220021	chr8	90644451	90646730	+	0	NA	exon (NM_001008495, exon 1 of 3)	exon (NM_001008495, exon 1 of 3)	315	NM_001146273	169200		NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
156920	chr22	42286071	42286730	+	0	NA	Intergenic	MIR|SINE|MIR	-2473	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
37793	chr11	32566521	32566800	+	0	NA	Intergenic	L1MC5|LINE|L1	-17171	NM_001307929	10480		NM_006360	ENSG00000149100	EIF3M	B5|GA17|PCID1|TANGO7|hfl-B5	eukaryotic translation initiation factor 3 subunit M	protein-coding
82185	chr16	14936771	14937130	+	0	NA	promoter-TSS (NM_006985)	promoter-TSS (NM_006985)	-493	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
33258	chr10	114507651	114508150	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	19013	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
69441	chr14	94162001	94162430	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-12097	NM_020958	57718		NM_020958	ENSG00000119698	PPP4R4	CFAP14|KIAA1622|PP4R4	protein phosphatase 4 regulatory subunit 4	protein-coding
90069	chr16	89993671	89993980	+	0	NA	non-coding (NR_003226, exon 10 of 11)	non-coding (NR_003226, exon 10 of 11)	15179	NM_001371581	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
116408	chr19	17996621	17997400	+	0	NA	intron (NM_002248, intron 10 of 10)	intron (NM_002248, intron 10 of 10)	-4114	NM_001025604	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
164770	chr3	69100571	69101700	+	0	NA	intron (NM_006407, intron 1 of 2)	intron (NM_006407, intron 1 of 2)	16198	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
143502	chr20	31485651	31485950	+	0	NA	promoter-TSS (NR_024358)	promoter-TSS (NR_024358)	22	NR_024358	140875		NR_024358	ENSG00000233354	LINC00028	C20orf93|NCRNA00028|dJ1093G12.6	long intergenic non-protein coding RNA 28	ncRNA
194679	chr6	33677421	33677880	+	0	NA	intron (NM_002224, intron 28 of 57)	intron (NM_002224, intron 28 of 57)	-20478	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
91536	chr17	4996001	4996330	+	0	NA	intron (NM_001167986, intron 2 of 8)	AluJb|SINE|Alu	1445	NM_001167986	388324		NM_213726	ENSG00000196388	INCA1	HSD45	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding
172043	chr4	1005721	1006900	+	0	NA	Intergenic	AluSx4|SINE|Alu	-5316	NM_001004356	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
92132	chr17	7622301	7622500	+	0	NA	intron (NM_001289114, intron 1 of 7)	AluSx1|SINE|Alu	5421	NM_133491	112483		NM_133491	ENSG00000141504	SAT2	SSAT-2|SSAT2	spermidine/spermine N1-acetyltransferase family member 2	protein-coding
88048	chr16	81449371	81449550	+	0	NA	intron (NM_198390, intron 1 of 20)	MIRb|SINE|MIR	4290	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
145296	chr20	41040551	41041880	+	0	NA	intron (NM_003286, intron 2 of 20)	AluJo|SINE|Alu	12393	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
8326	chr1	40166621	40166880	+	0	NA	intron (NM_012421, intron 1 of 7)	L1PA5|LINE|L1	5363	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
27001	chr10	26806571	26806800	+	0	NA	intron (NR_145410, intron 2 of 11)	intron (NR_145410, intron 2 of 11)	54273	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
170345	chr3	184540971	184541700	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	15583	NR_046593	100874079		NR_046593	ENSG00000230215	LINC01840	EIF2B5-AS1	long intergenic non-protein coding RNA 1840	ncRNA
219495	chr8	73895621	73896530	+	0	NA	Intergenic	AluSz|SINE|Alu	17093	NR_147034	101926947		NR_147034		LINC01617	C8orf23|NCRNA00249|XLOC_006844	long intergenic non-protein coding RNA 1617	ncRNA
176202	chr4	83599351	83599450	+	0	NA	intron (NM_001256421, intron 12 of 12)	MLT1J|LTR|ERVL-MaLR	63292	NM_032717	84803		NM_032717	ENSG00000138678	GPAT3	AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1	glycerol-3-phosphate acyltransferase 3	protein-coding
35916	chr11	2424771	2425130	+	0	NA	Intergenic	Intergenic	-1905	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
170870	chr3	192887801	192888000	+	0	NA	intron (NM_178496, intron 1 of 1)	MER5A1|DNA|hAT-Charlie	29956	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
207921	chr7	50663571	50663930	+	0	NA	intron (NM_001371008, intron 4 of 15)	L3b|LINE|CR1	41551	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
164558	chr3	63981971	63982130	+	0	NA	intron (NM_001177387, intron 5 of 12)	intron (NM_001177387, intron 5 of 12)	14256	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
43512	chr11	81644271	81644650	+	0	NA	Intergenic	Intergenic	246376	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
106134	chr18	9333721	9335400	+	0	NA	promoter-TSS (NM_020648)	promoter-TSS (NM_020648)	-213	NM_020648	57045		NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation BMP signaling modulator 1	protein-coding
82684	chr16	19899251	19899600	+	0	NA	Intergenic	Intergenic	-13791	NM_001304771	51704		NM_016235	ENSG00000167191	GPRC5B	MLC3|RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding
143987	chr20	32966371	32966550	+	0	NA	Intergenic	Intergenic	37973	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
199930	chr6	127895951	127896050	+	0	NA	intron (NM_001164687, intron 1 of 5).2	L1ME3A|LINE|L1	5081	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
94070	chr17	27470151	27470450	+	0	NA	intron (NM_001367810, intron 1 of 18)	AluSg|SINE|Alu	-1664	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
198220	chr6	98832821	98833800	+	0	NA	Intergenic	CpG	-1264	NM_005604	5454		NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
128127	chr2	48328301	48329030	+	0	NA	5' UTR (NM_001375451, exon 2 of 8)	5' UTR (NM_001375451, exon 2 of 8)	13983	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
85963	chr16	57282721	57283000	+	0	NA	intron (NM_015993, intron 1 of 3)	L2b|LINE|L2	1812	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
56735	chr12	120128421	120129050	+	0	NA	intron (NM_006836, intron 57 of 57)	Charlie15a|DNA|hAT-Charlie	-11982	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
69240	chr14	92848701	92849100	+	0	NA	Intergenic	Intergenic	54595	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
178643	chr4	152369821	152370130	+	0	NA	intron (NM_033632, intron 2 of 11)	intron (NM_033632, intron 2 of 11)	12554	NM_001013415	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
197849	chr6	88948101	88948580	+	0	NA	intron (NM_001286426, intron 1 of 14)	SVA_F|Retroposon|SVA	15278	NM_003800	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
212431	chr7	128359651	128360030	+	0	NA	exon (NM_001114726, exon 2 of 6)	exon (NM_001114726, exon 2 of 6)	1845	NM_001174164	401399		NM_001114726	ENSG00000224940	PRRT4	-	proline rich transmembrane protein 4	protein-coding
75709	chr15	68062221	68062980	+	0	NA	intron (NM_001320687, intron 2 of 14)	L1MB8|LINE|L1	8024	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
22403	chr1	219927951	219928350	+	0	NA	promoter-TSS (NR_165031)	promoter-TSS (NR_165031)	407	NM_018713	55532		NM_018713	ENSG00000196660	SLC30A10	HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10	solute carrier family 30 member 10	protein-coding
71701	chr15	20301471	20301630	+	0	NA	Intergenic	REP522|Satellite|telo	18806	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
93649	chr17	19185901	19186250	+	0	NA	Intergenic	AluSg|SINE|Alu	-1941	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
187286	chr5	141566771	141566950	+	0	NA	intron (NM_005219, intron 17 of 27)	AluSx|SINE|Alu	8549	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
182564	chr5	65929671	65929830	+	0	NA	intron (NM_001253697, intron 1 of 25)	AluSx|SINE|Alu	3175	NM_001253697	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
118945	chr19	38829671	38830200	+	0	NA	intron (NM_001398, intron 3 of 9).2	AluSq2|SINE|Alu	1859	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
43388	chr11	77071671	77072360	+	0	NA	intron (NM_004055, intron 1 of 12)	intron (NM_004055, intron 1 of 12)	5044	NM_004055	726		NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
50163	chr12	45920851	45921150	+	0	NA	3' UTR (NM_004719, exon 15 of 15)	3' UTR (NM_004719, exon 15 of 15)	69574	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
210890	chr7	101172031	101172630	+	0	NA	exon (NM_198571, exon 4 of 4)	exon (NM_198571, exon 4 of 4)	-6761	NM_003378	7425		NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
181497	chr5	42996401	42996600	+	0	NA	Intergenic	(GTTTT)n|Simple_repeat|Simple_repeat	-3167	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
179475	chr4	184478671	184478830	+	0	NA	Intergenic	Intergenic	-4200	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
21435	chr1	205406071	205406630	+	0	NA	intron (NR_037583, intron 2 of 3)	L1PA3|LINE|L1	15706	NM_001199052	93273		NM_001001552	ENSG00000186007	LEMD1	CT50|LEMP-1	LEM domain containing 1	protein-coding
45824	chr11	119362421	119363230	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	1383	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
8380	chr1	40378421	40378880	+	0	NA	intron (NM_001198978, intron 1 of 9)	intron (NM_001198978, intron 1 of 9)	4017	NM_001198978	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
15007	chr1	148155751	148156450	+	0	NA	Intergenic	MER51D|LTR|ERV1	-3819	NM_001385471	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
163096	chr3	50106871	50107030	+	0	NA	intron (NR_036627, intron 10 of 23)	intron (NR_036627, intron 10 of 23)	-5962	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
35846	chr11	2311551	2312300	+	0	NA	intron (NM_139022, intron 4 of 9)	intron (NM_139022, intron 4 of 9)	-8785	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
181836	chr5	52944251	52944550	+	0	NA	intron (NM_181501, intron 26 of 28)	L1PA16|LINE|L1	-44952	NR_073107	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
218195	chr8	42003121	42003850	+	0	NA	intron (NM_001305878, intron 2 of 13)	LTR50|LTR|ERVL	-48265	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
21957	chr1	208093851	208094560	+	0	NA	intron (NM_025179, intron 8 of 31)	intron (NM_025179, intron 8 of 31)	135214	NR_167983	105372883		NR_167982		LINC02767	-	long intergenic non-protein coding RNA 2767	ncRNA
34879	chr11	364101	365400	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-4749	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
209811	chr7	87926671	87927080	+	0	NA	Intergenic	L1PB1|LINE|L1	-7268	NM_004194	53616		NM_004194	ENSG00000008277	ADAM22	ADAM 22|DEE61|EIEE61|MDC2	ADAM metallopeptidase domain 22	protein-coding
30200	chr10	74738651	74739380	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-86240	NM_001370139	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
221392	chr8	123420601	123421000	+	0	NA	intron (NM_018024, intron 1 of 5)	AluSc|SINE|Alu	4026	NM_018024	55093		NM_018024	ENSG00000156795	NTAQ1	C8orf32|WDYHV1	N-terminal glutamine amidase 1	protein-coding
98288	chr17	46223371	46223730	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	1817	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
181511	chr5	43029701	43030100	+	0	NA	intron (NR_104651, intron 2 of 2)	AluSp|SINE|Alu	-10257	NR_104650	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
90970	chr17	2696221	2696480	+	0	NA	intron (NM_015229, intron 12 of 25)	intron (NM_015229, intron 12 of 25)	-3431	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
81486	chr16	8939171	8939330	+	0	NA	intron (NM_003470, intron 1 of 30)	L1MD2|LINE|L1	-2611	NM_001286457	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
49195	chr12	15631121	15631200	+	0	NA	intron (NM_004447, intron 18 of 20)	MIR|SINE|MIR	84549	NM_030668	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
180109	chr5	1268371	1269080	+	0	NA	intron (NR_149162, intron 6 of 12)	(CA)n|Simple_repeat|Simple_repeat	26343	NM_198253	7015		NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
209536	chr7	77191801	77192000	+	0	NA	intron (NM_020879, intron 2 of 18)	AluY|SINE|Alu	7919	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
42347	chr11	68524471	68524830	+	0	NA	intron (NM_001352348, intron 3 of 24)	L3|LINE|CR1	63898	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
38511	chr11	45887671	45887830	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	2099	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
179562	chr4	185201151	185201630	+	0	NA	intron (NM_020827, intron 1 of 4)	Tigger1|DNA|TcMar-Tigger	2610	NM_020827	57587		NM_020827	ENSG00000164323	CFAP97	KIAA1430|hmw	cilia and flagella associated protein 97	protein-coding
227258	chr9	89361751	89361850	+	0	NA	non-coding (NR_163888, exon 18 of 18)	non-coding (NR_163888, exon 18 of 18)	42949	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
195492	chr6	37164321	37164950	+	0	NA	Intergenic	Intergenic	-5517	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
64517	chr14	24400071	24400230	+	0	NA	intron (NM_025081, intron 2 of 8)	intron (NM_025081, intron 2 of 8)	1147	NM_025081	57523		NM_025081	ENSG00000205978	NYNRIN	CGIN1|KIAA1305	NYN domain and retroviral integrase containing	protein-coding
161343	chr3	40309211	40310650	+	0	NA	promoter-TSS (NR_033965)	promoter-TSS (NR_033965)	223	NM_005875	10289		NM_005875	ENSG00000114784	EIF1B	GC20	eukaryotic translation initiation factor 1B	protein-coding
200622	chr6	136786971	136787130	+	0	NA	TTS (NR_134635)	TTS (NR_134635)	3003	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
49408	chr12	22624671	22626180	+	0	NA	promoter-TSS (NR_135030)	promoter-TSS (NR_135030)	254	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
161227	chr3	39187671	39188500	+	0	NA	exon (NM_001198621, exon 2 of 3)	exon (NM_001198621, exon 2 of 3)	4510	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
49160	chr12	14958531	14959850	+	0	NA	intron (NM_001321420, intron 1 of 6)	AluJb|SINE|Alu	2090	NM_001321421	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
169378	chr3	160445521	160446150	+	0	NA	intron (NR_148403, intron 1 of 20)	AluJr|SINE|Alu	3951	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
176028	chr4	82359271	82359750	+	0	NA	exon (NM_031369, exon 2 of 8)	exon (NM_031369, exon 2 of 8)	14481	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
98939	chr17	48629551	48630050	+	0	NA	Intergenic	Intergenic	2759	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
120273	chr19	43087851	43087950	+	0	NA	Intergenic	LTR13|LTR|ERVK	-5199	NM_031246	5670		NM_031246	ENSG00000242221	PSG2	CEA|PSBG2|PSG1	pregnancy specific beta-1-glycoprotein 2	protein-coding
178744	chr4	153129251	153130330	+	0	NA	Intergenic	(CAC)n|Simple_repeat|Simple_repeat	-22373	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
188581	chr5	157154201	157154550	+	0	NA	Intergenic	AluSx|SINE|Alu	-11510	NM_004270	9443		NM_004270	ENSG00000155868	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
141710	chr2	241845521	241846180	+	0	NA	Intergenic	AluY|SINE|Alu	13044	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
47226	chr12	947551	947650	+	0	NA	intron (NR_123713, intron 1 of 13)	intron (NR_123713, intron 1 of 13)	2094	NM_001297422	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
111460	chr19	3879871	3880030	+	0	NA	promoter-TSS (NM_033064)	promoter-TSS (NM_033064)	-735	NM_033064	85300		NM_033064	ENSG00000167654	ATCAY	BNIP-H|CLAC	ATCAY kinesin light chain interacting caytaxin	protein-coding
46423	chr11	126477951	126478500	+	0	NA	intron (NM_001161707, intron 4 of 13)	L2a|LINE|L2	72138	NM_001254759	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
125420	chr2	11759701	11759900	+	0	NA	intron (NM_001349204, intron 2 of 21)	SVA_A|Retroposon|SVA	-7644	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
158781	chr3	9425271	9425630	+	0	NA	intron (NM_001349451, intron 2 of 25)	intron (NM_001349451, intron 2 of 25)	27835	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
29411	chr10	70169751	70171200	+	0	NA	promoter-TSS (NM_020150)	promoter-TSS (NM_020150)	39	NM_001142648	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
169651	chr3	171457251	171458600	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	2480	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
46375	chr11	126264951	126265250	+	0	NA	exon (NM_003139, exon 11 of 14)	exon (NM_003139, exon 11 of 14)	3795	NM_003139	6734		NM_003139	ENSG00000182934	SRPRA	DP|SRPR|Sralpha	SRP receptor subunit alpha	protein-coding
66089	chr14	59464501	59466050	+	0	NA	5' UTR (NM_022571, exon 1 of 1)	5' UTR (NM_022571, exon 1 of 1)	105	NM_022571	64582		NM_022571	ENSG00000181619	GPR135	HUMNPIIY20	G protein-coupled receptor 135	protein-coding
234484	chrX	18317651	18317750	+	0	NA	intron (NR_033717, intron 6 of 15)	AluY|SINE|Alu	36988	NR_033717	10389		NM_006089	ENSG00000102098	SCML2	-	Scm polycomb group protein like 2	protein-coding
161192	chr3	39140901	39141760	+	0	NA	TTS (NM_001320560)	TTS (NM_001320560)	3124	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
182105	chr5	56059971	56060130	+	0	NA	Intergenic	PRIMA4_LTR|LTR|ERV1	64883	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
152663	chr22	21576201	21576400	+	0	NA	intron (NR_046082, intron 1 of 3)	AluY|SINE|Alu	8586	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
175559	chr4	75626601	75627650	+	0	NA	intron (NM_003948, intron 1 of 11)	AluSx|SINE|Alu	3403	NM_003948	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
229178	chr9	114591121	114591580	+	0	NA	intron (NM_004888, intron 1 of 2)	intron (NM_004888, intron 1 of 2)	3581	NM_004888	9550		NM_004888	ENSG00000136888	ATP6V1G1	ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10	ATPase H+ transporting V1 subunit G1	protein-coding
61857	chr13	76995771	76995930	+	0	NA	intron (NM_006493, intron 2 of 3)	intron (NM_006493, intron 2 of 3)	3769	NM_006493	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
236786	chrX	79107571	79108900	+	0	NA	Intergenic	Intergenic	-36453	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
120540	chr19	44910971	44911700	+	0	NA	Intergenic	Intergenic	-2990	NM_001321065	341		NM_001645	ENSG00000130208	APOC1	Apo-CI|ApoC-I|apo-CIB|apoC-IB	apolipoprotein C1	protein-coding
16776	chr1	155499921	155500480	+	0	NA	intron (NM_018489, intron 2 of 27)	intron (NM_018489, intron 2 of 27)	-61842	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
58681	chr12	132544921	132545430	+	0	NA	intron (NM_001382740, intron 4 of 11)	intron (NM_001382740, intron 4 of 11)	-36822	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
148780	chr21	8213701	8215200	+	0	NA	non-coding (NR_003287, exon 1 of 3)	non-coding (NR_003287, exon 1 of 3)	562	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
2248	chr1	8898471	8899300	+	0	NA	Intergenic	LTR12|LTR|ERV1	20050	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
169901	chr3	177640951	177641050	+	0	NA	intron (NR_047568, intron 3 of 3)	L1PB1|LINE|L1	-175865	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
105015	chr17	82039051	82039700	+	0	NA	TTS (NR_159948)	TTS (NR_159948)	1457	NR_159948	113523640		NR_159947	ENSG00000264569	DCXR-DT	-	DCXR divergent transcript	ncRNA
161049	chr3	38017971	38018330	+	0	NA	intron (NM_006225, intron 2 of 14)	intron (NM_006225, intron 2 of 14)	6370	NM_001130964	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
20534	chr1	198690801	198692300	+	0	NA	intron (NM_002838, intron 2 of 32)	L2a|LINE|L2	52510	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
19758	chr1	181937001	181937400	+	0	NA	Intergenic	Intergenic	124512	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
104413	chr17	81059051	81059430	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	1506	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
67479	chr14	70911801	70912430	+	0	NA	intron (NM_014982, intron 1 of 35)	AluY|SINE|Alu	4656	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
221143	chr8	119498821	119499080	+	0	NA	Intergenic	(ATAT)n|Simple_repeat|Simple_repeat	82504	NM_002514	4856		NM_002514	ENSG00000136999	CCN3	IBP-9|IGFBP-9|IGFBP9|NOV|NOVh	cellular communication network factor 3	protein-coding
83883	chr16	28947451	28947900	+	0	NA	Intergenic	LTR26|LTR|ERV1	-3322	NM_032815	84901		NM_032815	ENSG00000176953	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T cells 2 interacting protein	protein-coding
151711	chr22	17628221	17629300	+	0	NA	promoter-TSS (NM_001039366)	promoter-TSS (NM_001039366)	-11	NM_001696	529		NM_001696	ENSG00000131100	ATP6V1E1	ARCL2C|ATP6E|ATP6E2|ATP6V1E|P31|Vma4	ATPase H+ transporting V1 subunit E1	protein-coding
86507	chr16	67081551	67081650	+	0	NA	intron (NM_022845, intron 4 of 5)	AluJr|SINE|Alu	-28341	NM_001320542	80262		NM_025187	ENSG00000125149	PHAF1	C16orf6|C16orf70|LIN10|MYTHO|lin-10	phagosome assembly factor 1	protein-coding
111791	chr19	4446851	4447150	+	0	NA	TTS (NR_039901)	TTS (NR_039901)	1022	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
121993	chr19	48513021	48514180	+	0	NA	promoter-TSS (NM_001080434)	promoter-TSS (NM_001080434)	-411	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
152764	chr22	21764331	21765300	+	0	NA	intron (NM_002745, intron 8 of 8)	intron (NM_002745, intron 8 of 8)	-29021	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
142494	chr20	4711671	4711830	+	0	NA	Intergenic	L1MB7|LINE|L1	-10159	NM_012409	23627		NM_012409	ENSG00000171864	PRND	DOPPEL|DPL|PrPLP|dJ1068H6.4	prion like protein doppel	protein-coding
79326	chr16	570801	571930	+	0	NA	intron (NM_004204, intron 1 of 10)	intron (NM_004204, intron 1 of 10)	1397	NM_004204	9091		NM_004204	ENSG00000007541	PIGQ	DEE77|EIEE77|GPI1|GPIBD19|MCAHS4|c407A10.1	phosphatidylinositol glycan anchor biosynthesis class Q	protein-coding
206110	chr7	27219421	27219700	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	19139	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
233676	chrX	1163851	1164230	+	0	NA	Intergenic	AluSx1|SINE|Alu	48609	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
135306	chr2	160295521	160296030	+	0	NA	intron (NM_016836, intron 6 of 13)	intron (NM_016836, intron 6 of 13)	-23880	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
106616	chr18	22343621	22343980	+	0	NA	Intergenic	Intergenic	74115	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
133170	chr2	112767821	112768680	+	0	NA	Intergenic	L1MB8|LINE|L1	-3641	NR_130712	150468		NM_152515	ENSG00000169607	CKAP2L	-	cytoskeleton associated protein 2 like	protein-coding
141567	chr2	241542671	241543080	+	0	NA	Intergenic	AluSx3|SINE|Alu	-15870	NM_032515	666		NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2 family apoptosis regulator BOK	protein-coding
18340	chr1	161200121	161200980	+	0	NA	intron (NM_001377301, intron 1 of 13)	intron (NM_001377301, intron 1 of 13)	1235	NM_004550	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
7182	chr1	32265071	32265650	+	0	NA	intron (NM_005356, intron 1 of 12)	Charlie19a|DNA|hAT-Charlie	-8751	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
6666	chr1	29127001	29128100	+	0	NA	Intergenic	Intergenic	-3647	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
150834	chr21	44024971	44025150	+	0	NA	intron (NM_003274, intron 1 of 22)	L1MC5|LINE|L1	12751	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
163068	chr3	49945971	49946130	+	0	NA	intron (NR_146071, intron 1 of 15)	MLT1B|LTR|ERVL-MaLR	5900	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
224874	chr9	31390621	31390880	+	0	NA	Intergenic	Intergenic	-9260	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
37244	chr11	14595401	14595600	+	0	NA	intron (NM_148976, intron 2 of 10)	L1PA6|LINE|L1	48134	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
83721	chr16	28524621	28524950	+	0	NA	Intergenic	MER66D|LTR|ERV1	14189	NM_012385	26471		NM_012385	ENSG00000176046	NUPR1	COM1|P8	nuclear protein 1, transcriptional regulator	protein-coding
102291	chr17	75335221	75335850	+	0	NA	intron (NM_203506, intron 2 of 4)	Tigger10|DNA|TcMar-Tigger	-46086	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
128292	chr2	54604071	54604330	+	0	NA	intron (NM_178313, intron 2 of 30)	intron (NM_178313, intron 2 of 30)	45806	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
98106	chr17	45612901	45613300	+	0	NA	Intergenic	AluSz6|SINE|Alu	-7229	NR_138259	147081		NM_152466	ENSG00000293460	LINC02210	C17orf69|CRHR1-IT1	long intergenic non-protein coding RNA 2210	ncRNA
109287	chr19	550921	551680	+	0	NA	Intergenic	CpG	7247	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
81260	chr16	4618771	4618930	+	0	NA	Intergenic	Intergenic	-3962	NM_001330467	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
239289	chrY	14301571	14301730	+	0	NA	Intergenic	Intergenic	-220966	NM_001365591	22829		NM_014893	ENSG00000165246	NLGN4Y	HNL4Y	neuroligin 4 Y-linked	protein-coding
72607	chr15	37096351	37096650	+	0	NA	intron (NM_172315, intron 1 of 11)	intron (NM_172315, intron 1 of 11)	2196	NM_172315	4212		NM_002399	ENSG00000134138	MEIS2	CPCMR|HsT18361|MRG1	Meis homeobox 2	protein-coding
215033	chr7	152433451	152434930	+	0	NA	intron (NM_170606, intron 1 of 58)	intron (NM_170606, intron 1 of 58)	1813	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
214435	chr7	149871851	149872330	+	0	NA	promoter-TSS (NM_145230)	promoter-TSS (NM_145230)	-874	NM_001367792	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
95123	chr17	35004321	35004580	+	0	NA	exon (NM_013975, exon 20 of 20)	exon (NM_013975, exon 20 of 20)	23938	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
133624	chr2	126666421	126666680	+	0	NA	intron (NM_016815, intron 1 of 2)	MIRc|SINE|MIR	10392	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
20115	chr1	192512721	192513180	+	0	NA	Intergenic	Intergenic	-62823	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
225353	chr9	34659321	34659780	+	0	NA	intron (NR_052010, intron 8 of 12)	MIRb|SINE|MIR	3107	NM_006664	10850		NM_006664	ENSG00000213927	CCL27	ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27	C-C motif chemokine ligand 27	protein-coding
157564	chr22	45891521	45891780	+	0	NA	Intergenic	CpG	85512	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
152286	chr22	20305521	20306500	+	0	NA	Intergenic	Intergenic	14050	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
195985	chr6	41976751	41977250	+	0	NA	intron (NM_001136017, intron 1 of 4)	MamSINE1|SINE|tRNA-RTE	-35152	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
206069	chr7	27168351	27168730	+	0	NA	promoter-TSS (NR_046609)	promoter-TSS (NR_046609)	-359	NR_046609	100874323		NR_046609	ENSG00000253187	HOXA10-AS	HOXA-AS4	HOXA10 antisense RNA	ncRNA
136067	chr2	172970601	172971000	+	0	NA	intron (NR_164740, intron 9 of 30)	intron (NR_164740, intron 9 of 30)	42648	NM_001282901	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
126984	chr2	36549171	36549730	+	0	NA	3' UTR (NM_016441, exon 17 of 17)	3' UTR (NM_016441, exon 17 of 17)	48718	NM_005102	9637		NM_005102	ENSG00000171055	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2	protein-coding
78209	chr15	90596051	90596450	+	0	NA	intron (NM_001042574, intron 3 of 14)	L2a|LINE|L2	-63984	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
99227	chr17	49630801	49631000	+	0	NA	intron (NM_001007228, intron 1 of 9)	L1ME4b|LINE|L1	-4311	NM_001370732	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
24799	chr10	64271	64430	+	0	NA	Intergenic	(CCCTAA)n|Simple_repeat|Simple_repeat	-15054	NM_177987	347688		NM_177987	ENSG00000261456	TUBB8	OOMD|OOMD2|OZEMA2|bA631M21.2	tubulin beta 8 class VIII	protein-coding
150007	chr21	37071201	37071480	+	0	NA	intron (NM_153682, intron 2 of 4)	MIR|SINE|MIR	1463	NM_153681	51227		NM_016430	ENSG00000185808	PIGP	DCRC|DCRC-S|DEE55|DSCR5|DSRC|EIEE55|PIG-P	phosphatidylinositol glycan anchor biosynthesis class P	protein-coding
124826	chr2	7721621	7723150	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	177270	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
81295	chr16	4682351	4682450	+	0	NA	intron (NM_001142291, intron 12 of 15)	CpG	11082	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
231696	chr9	131715371	131715530	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-5608	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
226528	chr9	71908171	71908330	+	0	NA	intron (NM_016014, intron 1 of 4)	AluSq2|SINE|Alu	2943	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
131190	chr2	95022121	95022800	+	0	NA	Intergenic	Intergenic	-3195	NM_022440	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
191453	chr6	10726521	10727500	+	0	NA	intron (NM_016462, intron 4 of 5).2	intron (NM_016462, intron 4 of 5).2	3940	NM_016462	51522		NM_016462	ENSG00000111843	TMEM14C	C6orf53|HSPC194|MSTP073|NET26|bA421M1.6	transmembrane protein 14C	protein-coding
88583	chr16	85570701	85572930	+	0	NA	Intergenic	Intergenic	-39594	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
123973	chr19	55418121	55418700	+	0	NA	Intergenic	Intergenic	-10622	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
229062	chr9	114346201	114346630	+	0	NA	intron (NM_001317952, intron 16 of 20)	MIRb|SINE|MIR	16546	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
67600	chr14	72516171	72516330	+	0	NA	promoter-TSS (NR_106994)	promoter-TSS (NR_106994)	-570	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
4778	chr1	23552021	23552480	+	0	NA	Intergenic	Intergenic	7251	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
74839	chr15	63507471	63507630	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	2957	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
230593	chr9	128572001	128572200	+	0	NA	intron (NM_001375310, intron 3 of 57)	AluSz6|SINE|Alu	19513	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
116681	chr19	18411751	18412200	+	0	NA	Intergenic	AluJr|SINE|Alu	-7423	NM_001009998	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
140287	chr2	232350501	232352580	+	0	NA	Intergenic	CpG	-27211	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
59744	chr13	29937811	29938400	+	0	NA	intron (NR_033889, intron 3 of 4)	intron (NR_033889, intron 3 of 4)	1574	NR_033889	440131		NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
200400	chr6	134434151	134434450	+	0	NA	intron (NR_125852, intron 4 of 4)	L1MC3|LINE|L1	-3416	NR_038216	154092		NR_038216	ENSG00000236700	LINC01010	-	long intergenic non-protein coding RNA 1010	ncRNA
139013	chr2	218381351	218382050	+	0	NA	promoter-TSS (NM_000578)	promoter-TSS (NM_000578)	-573	NM_000578	6556		NM_000578	ENSG00000018280	SLC11A1	LSH|NRAMP|NRAMP1	solute carrier family 11 member 1	protein-coding
14675	chr1	145822271	145823200	+	0	NA	intron (NM_014455, intron 1 of 8)	intron (NM_014455, intron 1 of 8)	1360	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
113771	chr19	10525151	10525450	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-7335	NM_001166215	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
28102	chr10	43392251	43392500	+	0	NA	intron (NM_001098204, intron 3 of 3)	AluSx1|SINE|Alu	4456	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
53959	chr12	71938701	71938980	+	0	NA	promoter-TSS (NM_173353)	promoter-TSS (NM_173353)	-5	NM_173353	121278		NM_173353	ENSG00000139287	TPH2	ADHD7|NTPH	tryptophan hydroxylase 2	protein-coding
212368	chr7	127761171	127761730	+	0	NA	intron (NM_014390, intron 10 of 23)	intron (NM_014390, intron 10 of 23)	109256	NM_014390	27044		NM_014390	ENSG00000197157	SND1	TDRD11|TSN|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
106962	chr18	31684551	31685790	+	0	NA	promoter-TSS (NM_004775)	promoter-TSS (NM_004775)	-589	NM_001330570	9331		NM_004775	ENSG00000118276	B4GALT6	B4Gal-T6|beta4Gal-T6	beta-1,4-galactosyltransferase 6	protein-coding
41967	chr11	67356001	67356200	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-2504	NM_001256870	57804		NM_021173	ENSG00000175482	POLD4	POLDS|p12	DNA polymerase delta 4, accessory subunit	protein-coding
133723	chr2	127381001	127381200	+	0	NA	intron (NM_001371911, intron 1 of 16)	FLAM_A|SINE|Alu	6875	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
14714	chr1	145955571	145956180	+	0	NA	intron (NM_153713, intron 1 of 5)	intron (NM_153713, intron 1 of 5)	2142	NM_153713	128077		NM_153713	ENSG00000271601	LIX1L	-	limb and CNS expressed 1 like	protein-coding
231940	chr9	133125821	133126720	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	3131	NM_001271775	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
188306	chr5	151172701	151173000	+	0	NA	Intergenic	AluSz|SINE|Alu	-15071	NM_001363114	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
219507	chr8	73974821	73975150	+	0	NA	Intergenic	Intergenic	-1157	NM_001040613	54968		NM_017866	ENSG00000175606	TMEM70	MC5DN2	transmembrane protein 70	protein-coding
197876	chr6	89117151	89118230	+	0	NA	intron (NM_080743, intron 1 of 4)	CpG	381	NM_001376898	135295		NM_080743	ENSG00000154548	SRSF12	SFRS13B|SFRS19|SRrp35	serine and arginine rich splicing factor 12	protein-coding
163172	chr3	50175901	50176100	+	0	NA	intron (NM_004186, intron 6 of 18)	(CCTCCTG)n|Simple_repeat|Simple_repeat	-15610	NM_144499	2779		NM_000172	ENSG00000114349	GNAT1	CSNB1G|CSNBAD3|GBT1|GNATR|HG1F	G protein subunit alpha transducin 1	protein-coding
192428	chr6	24884471	24885050	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-7395	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
94463	chr17	29261271	29261830	+	0	NA	3' UTR (NM_020772, exon 4 of 4)	3' UTR (NM_020772, exon 4 of 4)	14691	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
129969	chr2	73983201	73983800	+	0	NA	Intergenic	Intergenic	-1410	NM_001287491	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
87842	chr16	75653201	75654130	+	0	NA	intron (NR_144545, intron 1 of 2)	LTR16A|LTR|ERVL	5892	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
209084	chr7	74847401	74847830	+	0	NA	intron (NM_173537, intron 1 of 15)	AluSq2|SINE|Alu	2510	NM_001368300	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
95788	chr17	38709201	38709400	+	0	NA	intron (NM_005937, intron 5 of 19)	intron (NM_005937, intron 5 of 19)	4027	NM_005937	4302		NM_005937	ENSG00000275023	MLLT6	AF17	MLLT6, PHD finger containing	protein-coding
19278	chr1	172727721	172728280	+	0	NA	Intergenic	L1PA15-16|LINE|L1	68897	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
151442	chr21	46147251	46147700	+	0	NA	intron (NM_206965, intron 7 of 13)	intron (NM_206965, intron 7 of 13)	-3900	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
29150	chr10	68683321	68683580	+	0	NA	intron (NM_030625, intron 10 of 11)	AluY|SINE|Alu	-37789	NM_001282960	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
16256	chr1	153971501	153971700	+	0	NA	intron (NR_045658, intron 3 of 8)	(T)n|Simple_repeat|Simple_repeat	3350	NM_001255981	148327		NM_130898	ENSG00000143578	CREB3L4	AIBZIP|ATCE1|CREB3|CREB4|JAL|hJAL	cAMP responsive element binding protein 3 like 4	protein-coding
108796	chr18	77650671	77651080	+	0	NA	Intergenic	Intergenic	342852	NR_104127	101927715		NR_104127	ENSG00000265843	LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
142006	chr20	1533271	1533430	+	0	NA	TTS (NM_178460)	TTS (NM_178460)	24355	NM_178460	128646		NM_178460	ENSG00000125900	SIRPD	PTPNS1L2|dJ576H24.4	signal regulatory protein delta	protein-coding
17453	chr1	156694101	156694300	+	0	NA	Intergenic	Intergenic	11383	NM_001878	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
65358	chr14	50520151	50520600	+	0	NA	intron (NM_198794, intron 2 of 31)	AluSx|SINE|Alu	12194	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
236264	chrX	65926121	65926890	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-92365	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
163404	chr3	50531321	50531580	+	0	NA	Intergenic	Intergenic	-27206	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
48812	chr12	12033351	12033650	+	0	NA	Intergenic	Intergenic	-16361	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
91616	chr17	5388151	5388900	+	0	NA	intron (NM_001320653, intron 11 of 16)	AluSc8|SINE|Alu	-31116	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
79096	chr16	185571	185730	+	0	NA	Intergenic	Intergenic	5191	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
212396	chr7	128106471	128107150	+	0	NA	Intergenic	L2b|LINE|L2	24949	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
60644	chr13	42405301	42406200	+	0	NA	Intergenic	Intergenic	-19142	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
68378	chr14	78022151	78022250	+	0	NA	Intergenic	Intergenic	-148173	NM_001366425	9369		NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
125952	chr2	25211671	25212050	+	0	NA	Intergenic	Intergenic	7547	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
209317	chr7	76133251	76133830	+	0	NA	Intergenic	L2a|LINE|L2	-24778	NR_135079	101927126		NR_135079		GTF2IP7	-	general transcription factor IIi pseudogene 7	pseudo
139319	chr2	219541421	219542150	+	0	NA	exon (NM_024536, exon 2 of 4)	exon (NM_024536, exon 2 of 4)	1312	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
83130	chr16	22586771	22586950	+	0	NA	Intergenic	Intergenic	41162	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
103647	chr17	78763871	78764650	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSc|SINE|Alu	17948	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
42149	chr11	67710751	67711250	+	0	NA	Intergenic	CpG	-29776	NM_001031615	222		NM_000695	ENSG00000132746	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family member B2	protein-coding
233649	chrX	912551	913180	+	0	NA	Intergenic	Intergenic	288521	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
187663	chr5	143196571	143196930	+	0	NA	intron (NM_001349547, intron 20 of 21)	Tigger17a|DNA|TcMar-Tigger	4250	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
65196	chr14	49637971	49638130	+	0	NA	Intergenic	L1ME3A|LINE|L1	-2806	NM_018139	55172		NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
157105	chr22	42637451	42637550	+	0	NA	intron (NM_000398, intron 1 of 8)	intron (NM_000398, intron 1 of 8)	3101	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
219886	chr8	85650471	85650830	+	0	NA	Intergenic	L1PA5|LINE|L1	5026	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
148852	chr21	8416771	8417700	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	-15295	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
184101	chr5	93717251	93717350	+	0	NA	intron (NR_028080, intron 8 of 8)	intron (NR_028080, intron 8 of 8)	24300	NM_153216	134187		NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
8850	chr1	43364751	43365200	+	0	NA	promoter-TSS (NR_106792)	promoter-TSS (NR_106792)	-260	NR_106792	102466723		NR_106792	ENSG00000283836	MIR6734	hsa-mir-6734	microRNA 6734	ncRNA
76584	chr15	75346851	75348550	+	0	NA	promoter-TSS (NM_001256552)	promoter-TSS (NM_001256552)	81	NM_001256552	79661		NM_024608	ENSG00000140398	NEIL1	FPG1|NEI1|hFPG1	nei like DNA glycosylase 1	protein-coding
223372	chr8	143881001	143881300	+	0	NA	Intergenic	Intergenic	-2683	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238572	chrX	153827171	153827550	+	0	NA	intron (NM_032512, intron 1 of 7)	L1MB7|LINE|L1	2599	NM_001303516	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
125602	chr2	17753301	17754700	+	0	NA	promoter-TSS (NM_001142286)	promoter-TSS (NM_001142286)	131	NM_182625	348654		NM_182625	ENSG00000178295	GEN1	Gen	GEN1 Holliday junction 5' flap endonuclease	protein-coding
47703	chr12	6442201	6442650	+	0	NA	intron (NR_015382, intron 5 of 5)	AluSx1|SINE|Alu	-2530	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
108768	chr18	77134101	77134950	+	0	NA	Intergenic	Intergenic	-1742	NM_001025101	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
206363	chr7	30509821	30510480	+	0	NA	Intergenic	Intergenic	-5309	NM_001199816	79017		NM_024051	ENSG00000006625	GGCT	C7orf24|CRF21|GCTG|GGC	gamma-glutamylcyclotransferase	protein-coding
183477	chr5	79257301	79257750	+	0	NA	intron (NM_152405, intron 1 of 10)	AluJb|SINE|Alu	21394	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
154803	chr22	36901421	36901880	+	0	NA	Intergenic	Intergenic	-11978	NM_000395	1439		NM_000395	ENSG00000100368	CSF2RB	CD131|CDw131|IL3RB|IL5RB|SMDP5|betaGMR	colony stimulating factor 2 receptor subunit beta	protein-coding
33118	chr10	112115851	112116030	+	0	NA	Intergenic	Intergenic	67825	NM_020918	57678		NM_020918	ENSG00000119927	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
21612	chr1	206567221	206567680	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	10286	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
186419	chr5	135578871	135579030	+	0	NA	promoter-TSS (NM_004887)	promoter-TSS (NM_004887)	41	NM_004887	9547		NM_004887	ENSG00000145824	CXCL14	BMAC|BRAK|KEC|KS1|MIP-2g|MIP2G|NJAC|SCYB14	C-X-C motif chemokine ligand 14	protein-coding
225059	chr9	33233921	33234350	+	0	NA	Intergenic	Intergenic	-6032	NM_014471	27290		NM_014471	ENSG00000122711	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor Kazal type 4	protein-coding
161076	chr3	38113771	38114330	+	0	NA	intron (NM_001321153, intron 25 of 36)	FLAM_C|SINE|Alu	23077	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
165153	chr3	72102401	72102600	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-2045	NR_104116	285286		NR_104116	ENSG00000241163	LINC00877	-	long intergenic non-protein coding RNA 877	ncRNA
104295	chr17	80872501	80873100	+	0	NA	intron (NM_001163034, intron 13 of 29)	intron (NM_001163034, intron 13 of 29)	-67168	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
215339	chr7	157365751	157366350	+	0	NA	intron (NM_001363676, intron 3 of 6)	AluSq2|SINE|Alu	29046	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
92414	chr17	8382751	8384300	+	0	NA	promoter-TSS (NM_000987)	promoter-TSS (NM_000987)	-332	NM_000987	6154		NM_000987	ENSG00000161970	RPL26	DBA11|L26|uL24	ribosomal protein L26	protein-coding
14222	chr1	143212751	143213500	+	0	NA	Intergenic	Intergenic	209467	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
40805	chr11	64910401	64911130	+	0	NA	intron (NM_015104, intron 11 of 40)	intron (NM_015104, intron 11 of 40)	6444	NM_001367972	23130		NM_015104	ENSG00000110046	ATG2A	BLTP4A	autophagy related 2A	protein-coding
40491	chr11	64256701	64257050	+	0	NA	intron (NM_001316314, intron 10 of 31)	intron (NM_001316314, intron 10 of 31)	5345	NM_001184883	5331		NM_000932	ENSG00000149782	PLCB3	SMDCD	phospholipase C beta 3	protein-coding
12763	chr1	109632421	109633350	+	0	NA	TTS (NM_001368809)	TTS (NM_001368809)	8897	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
68667	chr14	90273451	90273550	+	0	NA	TTS (NM_001330212)	TTS (NM_001330212)	15561	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
39604	chr11	61336201	61336880	+	0	NA	intron (NM_001351980, intron 3 of 18)	intron (NM_001351980, intron 3 of 18)	3312	NM_001351979	26007		NM_015533	ENSG00000149476	TKFC	DAK|NET45|TKFCD	triokinase and FMN cyclase	protein-coding
34661	chr10	133339851	133340350	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-3204	NM_001321617	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
33811	chr10	123240101	123240550	+	0	NA	Intergenic	Intergenic	85923	NM_004725	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
231668	chr9	131673551	131673850	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-22297	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
238465	chrX	153077171	153078100	+	0	NA	Intergenic	CpG	5181	NM_032882	84968		NM_032882	ENSG00000235961	PNMA6A	MA6|PNMA6|PNMA6C	PNMA family member 6A	protein-coding
54636	chr12	92906271	92906430	+	0	NA	intron (NM_003566, intron 1 of 28)	AluJb|SINE|Alu	22945	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
62269	chr13	98574121	98574700	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	2697	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
190727	chr6	325401	325600	+	0	NA	intron (NR_104473, intron 3 of 5)	intron (NR_104473, intron 3 of 5)	33443	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
187764	chr5	144205121	144205450	+	0	NA	promoter-TSS (NM_001370487)	promoter-TSS (NM_001370487)	-106	NM_001370487	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
135581	chr2	165951451	165951630	+	0	NA	intron (NM_024753, intron 1 of 28)	intron (NM_024753, intron 1 of 28)	2236	NM_024753	79809		NM_024753	ENSG00000123607	TTC21B	ATD4|CFAP60|FAP60|FLA17|IFT139|IFT139B|JBTS11|NPHP12|Nbla10696|SRTD4|THM1	tetratricopeptide repeat domain 21B	protein-coding
181446	chr5	41809001	41809400	+	0	NA	intron (NM_001364301, intron 7 of 16)	L1ME4a|LINE|L1	34457	NM_001364303	5019		NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA-transferase 1	protein-coding
120718	chr19	45304951	45305250	+	0	NA	3' UTR (NM_031417, exon 18 of 18)	3' UTR (NM_031417, exon 18 of 18)	17775	NM_001824	1158		NM_001824	ENSG00000104879	CKM	CKMM|CPK-M|M-CK	creatine kinase, M-type	protein-coding
163047	chr3	49898701	49900250	+	0	NA	intron (NM_002447, intron 1 of 19)	intron (NM_002447, intron 1 of 19)	4162	NM_001318913	4486		NM_002447	ENSG00000164078	MST1R	CD136|CDw136|NPCA3|PTK8|RON|SEA|p185-Ron	macrophage stimulating 1 receptor	protein-coding
156771	chr22	41876701	41876900	+	0	NA	intron (NR_103834, intron 7 of 21)	MER3|DNA|hAT-Charlie	-24144	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
18019	chr1	160569451	160569550	+	0	NA	intron (NM_003874, intron 1 of 6)	intron (NM_003874, intron 1 of 6)	9996	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
78717	chr15	98600121	98600640	+	0	NA	Intergenic	(CCT)n|Simple_repeat|Simple_repeat	-48159	NM_001291858	3480		NM_000875	ENSG00000140443	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin like growth factor 1 receptor	protein-coding
58187	chr12	125050651	125050950	+	0	NA	Intergenic	Intergenic	-14635	NM_023928	65985		NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
9797	chr1	53594301	53594700	+	0	NA	exon (NM_001367484, exon 4 of 11)	exon (NM_001367484, exon 4 of 11)	135101	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
141548	chr2	241353701	241353900	+	0	NA	3' UTR (NM_006155, exon 13 of 13)	3' UTR (NM_006155, exon 13 of 13)	-2485	NM_001282984	9855		NM_014808	ENSG00000006607	FARP2	FIR|FRG|PLEKHC3	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein-coding
185623	chr5	131511671	131512130	+	0	NA	intron (NM_016340, intron 7 of 27)	intron (NM_016340, intron 7 of 27)	123329	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
47135	chr12	743401	744300	+	0	NA	Intergenic	L1ME1|LINE|L1	-8729	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
146770	chr20	50904171	50904330	+	0	NA	intron (NM_181442, intron 1 of 3)	AluJr|SINE|Alu	5541	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
149573	chr21	33237301	33237700	+	0	NA	intron (NM_001385055, intron 1 of 9)	AluJb|SINE|Alu	7562	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
158302	chr22	50398601	50399100	+	0	NA	intron (NM_001351648, intron 3 of 22)	HY3|scRNA|scRNA	-8592	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
179284	chr4	177250021	177250420	+	0	NA	Intergenic	Intergenic	-59654	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
238776	chrX	154360701	154361780	+	0	NA	intron (NM_001110556, intron 21 of 47)	intron (NM_001110556, intron 21 of 47)	13394	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
61658	chr13	73942501	73942900	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	191229	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
45741	chr11	119134401	119134600	+	0	NA	3' UTR (NM_001351958, exon 11 of 11)	3' UTR (NM_001351958, exon 11 of 11)	12920	NM_001351965	25988		NM_015517	ENSG00000172273	HINFP	HiNF-P|MIZF|ZNF743	histone H4 transcription factor	protein-coding
41749	chr11	66681671	66682280	+	0	NA	TTS (NM_006946)	TTS (NM_006946)	-4088	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
3720	chr1	16618051	16618350	+	0	NA	TTS (NR_026752)	TTS (NR_026752)	-4636	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
73999	chr15	52066651	52066750	+	0	NA	3' UTR (NM_002748, exon 6 of 6)	3' UTR (NM_002748, exon 6 of 6)	46075	NM_020396	10017		NM_020396	ENSG00000137875	BCL2L10	BCL-B|Boo|Diva|bcl2-L-10	BCL2 like 10	protein-coding
176269	chr4	87019871	87020030	+	0	NA	intron (NM_001313960, intron 1 of 17)	MER21A|LTR|ERVL	12949	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
143680	chr20	32051171	32051550	+	0	NA	promoter-TSS (NM_001172131)	promoter-TSS (NM_001172131)	-882	NM_001172129	3055		NM_002110	ENSG00000101336	HCK	AIPCV|JTK9|p59Hck|p61Hck	HCK proto-oncogene, Src family tyrosine kinase	protein-coding
144353	chr20	35004801	35005000	+	0	NA	intron (NM_199368, intron 16 of 18)	intron (NM_199368, intron 16 of 18)	-14428	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
170481	chr3	185983321	185983980	+	0	NA	Intergenic	Intergenic	23707	NR_151491	344887		NR_033752	ENSG00000290862	NMRAL2P	NMRAL1P1	NmrA like redox sensor 2, pseudogene	pseudo
82643	chr16	19117721	19118450	+	0	NA	non-coding (NR_028028, exon 2 of 2)	non-coding (NR_028028, exon 2 of 2)	4121	NM_001034841	162073		NM_001034841	ENSG00000205730	ITPRIPL2	D1C	ITPRIP like 2	protein-coding
53085	chr12	57738371	57738900	+	0	NA	promoter-TSS (NM_001122772)	promoter-TSS (NM_001122772)	-389	NM_001122772	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
31507	chr10	96695101	96695800	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	25064	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
229236	chr9	114930101	114932000	+	0	NA	promoter-TSS (NM_001252290)	promoter-TSS (NM_001252290)	-455	NM_001252290	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
199637	chr6	121437671	121437830	+	0	NA	intron (NM_000165, intron 1 of 1)	intron (NM_000165, intron 1 of 1)	2104	NM_000165	2697		NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
46890	chr11	134045621	134046150	+	0	NA	Intergenic	Intergenic	13613	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
228926	chr9	113215151	113215850	+	0	NA	intron (NM_015258, intron 1 of 27)	Tigger1|DNA|TcMar-Tigger	5777	NM_015258	23307		NM_015258	ENSG00000119321	FKBP15	FKBP133|KIAA0674|PPP1R76	FKBP prolyl isomerase family member 15	protein-coding
212841	chr7	130695971	130696130	+	0	NA	Intergenic	Intergenic	-8618	NM_001304968	114960		NM_052933	ENSG00000213265	TSGA13	-	testis specific 13	protein-coding
201170	chr6	142945801	142946900	+	0	NA	Intergenic	CpG-24066	-1174	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
197439	chr6	73695301	73696300	+	0	NA	promoter-TSS (NM_133493)	promoter-TSS (NM_133493)	-285	NM_001159587	135228		NM_133493	ENSG00000156535	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
207558	chr7	44857851	44857950	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-9774	NM_138635	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
143569	chr20	31661451	31662780	+	0	NA	Intergenic	MIR|SINE|MIR	24203	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
182913	chr5	70470101	70470300	+	0	NA	intron (NR_027386, intron 3 of 5).2	intron (NR_027386, intron 3 of 5).2	-16301	NR_073404	441081		NR_073404		LOC441081	-	POM121 membrane glycoprotein (rat) pseudogene	pseudo
230020	chr9	127199051	127199750	+	0	NA	intron (NM_001366400, intron 14 of 18)	intron (NM_001366400, intron 14 of 18)	-64262	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
101676	chr17	68351901	68352300	+	0	NA	intron (NM_001352901, intron 5 of 11)	(GA)n|Simple_repeat|Simple_repeat	59965	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
185724	chr5	132066451	132067200	+	0	NA	Intergenic	MIRb|SINE|MIR	6170	NM_000588	3562		NM_000588	ENSG00000164399	IL3	IL-3|MCGF|MULTI-CSF	interleukin 3	protein-coding
164921	chr3	71161301	71161500	+	0	NA	intron (NM_001244810, intron 6 of 20)	MLT1H|LTR|ERVL-MaLR	-29203	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
11163	chr1	87042171	87042530	+	0	NA	intron (NM_001134492, intron 1 of 4)	L1MB1|LINE|L1	-87415	NR_026988	339524		NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
100573	chr17	62964651	62964750	+	0	NA	Intergenic	Intergenic	-1535	NM_025185	26115		NM_015623	ENSG00000170921	TANC2	IDDALDS|ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
182282	chr5	57236821	57237080	+	0	NA	intron (NM_001203246, intron 5 of 10)	intron (NM_001203246, intron 5 of 10)	22876	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
28094	chr10	43384771	43385700	+	0	NA	TTS (NM_004966)	TTS (NM_004966)	11596	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
179330	chr4	182808701	182810350	+	0	NA	Intergenic	Intergenic	107728	NM_001351747	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
153681	chr22	29073921	29074630	+	0	NA	intron (NM_001039570, intron 1 of 8)	intron (NM_001039570, intron 1 of 8)	1240	NM_032045	83999		NM_032045	ENSG00000183762	KREMEN1	ECTD13|KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
45978	chr11	121467971	121468700	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	13454	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
46865	chr11	133942821	133943080	+	0	NA	intron (NM_001277285, intron 3 of 19)	intron (NM_001277285, intron 3 of 19)	14018	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
155524	chr22	38695851	38695950	+	0	NA	intron (NM_014876, intron 2 of 4)	AluSg|SINE|Alu	5043	NM_001360236	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
90472	chr17	1389351	1390180	+	0	NA	intron (NR_024058, intron 1 of 6)	AluY|SINE|Alu	10457	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
25312	chr10	6215601	6215800	+	0	NA	intron (NR_136554, intron 3 of 11)	intron (NR_136554, intron 3 of 11)	12768	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
183499	chr5	79303871	79304030	+	0	NA	intron (NM_152405, intron 6 of 10)	intron (NM_152405, intron 6 of 10)	67819	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
32080	chr10	101124901	101125300	+	0	NA	intron (NR_130724, intron 2 of 2)	intron (NR_130724, intron 2 of 2)	6046	NR_130723	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
122417	chr19	49450001	49450200	+	0	NA	intron (NM_017916, intron 2 of 8)	AluJr|SINE|Alu	1714	NM_017916	55011		NM_017916	ENSG00000104872	PIH1D1	DNAAF14|MOT48|NOP17|Pih1	PIH1 domain containing 1	protein-coding
48958	chr12	12839071	12839330	+	0	NA	Intergenic	Intergenic	25854	NM_201224	51202		NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD-box helicase 47	protein-coding
173644	chr4	13534821	13535080	+	0	NA	Intergenic	Intergenic	-3533	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
37076	chr11	12680401	12680800	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	6179	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
144059	chr20	33670871	33671030	+	0	NA	intron (NM_031232, intron 2 of 11)	intron (NM_031232, intron 2 of 11)	3478	NM_031231	63941		NM_031231	ENSG00000125967	NECAB3	APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5	N-terminal EF-hand calcium binding protein 3	protein-coding
234275	chrX	13483801	13484300	+	0	NA	Intergenic	Intergenic	-85551	NM_015507	25975		NM_015507	ENSG00000198759	EGFL6	MAEG|W80	EGF like domain multiple 6	protein-coding
148919	chr21	9125551	9126080	+	0	NA	intron (NR_038329, intron 2 of 2)	MER57A1|LTR|ERV1	3946	NR_038327	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
150444	chr21	42460301	42461300	+	0	NA	Intergenic	Intergenic	35424	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
100240	chr17	59358401	59359000	+	0	NA	intron (NM_001005404, intron 2 of 4)	AluSq|SINE|Alu	-7383	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
34369	chr10	132253551	132253850	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	-4592	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
125819	chr2	24215001	24215350	+	0	NA	intron (NM_019595, intron 31 of 38)	L4_A_Mam|LINE|RTE-X	40122	NM_001040710	653140		NM_001040710	ENSG00000186453	FAM228A	C2orf84	family with sequence similarity 228 member A	protein-coding
36486	chr11	6315871	6316100	+	0	NA	Intergenic	Intergenic	4516	NM_145040	112464		NM_145040	ENSG00000170955	CAVIN3	HSRBC|PRKCDBP|SRBC|cavin-3	caveolae associated protein 3	protein-coding
141989	chr20	1392451	1393700	+	0	NA	promoter-TSS (NM_054014)	promoter-TSS (NM_054014)	-21	NM_000801	2280		NM_000801	ENSG00000088832	FKBP1A	FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE	FKBP prolyl isomerase 1A	protein-coding
25588	chr10	8043301	8044000	+	0	NA	Intergenic	Intergenic	8841	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
37283	chr11	14698621	14699100	+	0	NA	intron (NM_001363569, intron 1 of 15)	MIRb|SINE|MIR	55056	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
63739	chr14	21222221	21223130	+	0	NA	intron (NM_001077443, intron 4 of 7)	AluY|SINE|Alu	-15775	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
134451	chr2	143175121	143176080	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	46181	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
20476	chr1	198624001	198624900	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-14518	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
95316	chr17	35585921	35586180	+	0	NA	Intergenic	AluSx|SINE|Alu	-1272	NM_001282	163		NM_001282	ENSG00000006125	AP2B1	ADTB2|AP105B|AP2-BETA|CLAPB1	adaptor related protein complex 2 subunit beta 1	protein-coding
173743	chr4	16205601	16206180	+	0	NA	intron (NM_153365, intron 2 of 13)	intron (NM_153365, intron 2 of 13)	20581	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
163229	chr3	50259851	50261350	+	0	NA	Intergenic	CpG	6771	NR_110702	101928931		NR_110702		SEMA3B-AS1	-	SEMA3B antisense RNA 1 (head to head)	ncRNA
57488	chr12	122085801	122086600	+	0	NA	intron (NM_014938, intron 1 of 16)	MLT1D|LTR|ERVL-MaLR	7444	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
78925	chr15	101243921	101245180	+	0	NA	intron (NM_014918, intron 1 of 2)	intron (NM_014918, intron 1 of 2)	7498	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
13233	chr1	112677501	112678480	+	0	NA	intron (NM_001369507, intron 1 of 19)	L2c|LINE|L2	3252	NM_001369507	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
159241	chr3	12922951	12923450	+	0	NA	intron (NM_014869, intron 4 of 13)	intron (NM_014869, intron 4 of 13)	-37989	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
92889	chr17	16438221	16439590	+	0	NA	promoter-TSS (NR_045021)	promoter-TSS (NR_045021)	-82	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
186571	chr5	138482821	138483480	+	0	NA	Intergenic	Intergenic	17671	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
149240	chr21	25605771	25606230	+	0	NA	intron (NM_017446, intron 2 of 9)	intron (NM_017446, intron 2 of 9)	1481	NM_080794	54148		NM_017446	ENSG00000154719	MRPL39	C21orf92|COXPD59|L39mt|L5mt|MRP-L5|MRPL5|MSTP003|PRED22|PRED66|RPML5|mL39	mitochondrial ribosomal protein L39	protein-coding
6843	chr1	31046001	31046200	+	0	NA	intron (NM_014676, intron 2 of 21)	AluSz6|SINE|Alu	19617	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
56078	chr12	110615151	110615630	+	0	NA	intron (NR_135088, intron 1 of 13)	Charlie4z|DNA|hAT-Charlie	1261	NM_001082537	79600		NM_024549	ENSG00000204852	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
63568	chr14	20427421	20428200	+	0	NA	3' UTR (NM_001109997, exon 4 of 4)	3' UTR (NM_001109997, exon 4 of 4)	8020	NM_001109997	123103		NM_001109997	ENSG00000185271	KLHL33	-	kelch like family member 33	protein-coding
59056	chr13	20709621	20709880	+	0	NA	intron (NM_001385224, intron 1 of 1)	intron (NM_001385224, intron 1 of 1)	6051	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
94599	chr17	29733251	29733350	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	28132	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
108592	chr18	75214901	75215350	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	4328	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
122591	chr19	49702571	49703550	+	0	NA	intron (NR_108072, intron 8 of 20)	intron (NR_108072, intron 8 of 20)	11564	NM_001378484	126129		NM_152359	ENSG00000169169	CPT1C	CATL1|CPT I-C|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73	carnitine palmitoyltransferase 1C	protein-coding
83844	chr16	28872051	28872450	+	0	NA	exon (NM_001308294, exon 6 of 9)	exon (NM_001308294, exon 6 of 9)	-6238	NM_004320	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
79113	chr16	204571	205130	+	0	NA	intron (NM_018032, intron 5 of 8)	Tigger2b_Pri|DNA|TcMar-Tigger	24391	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
59783	chr13	30222421	30222680	+	0	NA	intron (NM_032116, intron 9 of 10)	MLT1F1|LTR|ERVL-MaLR	-69476	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
192872	chr6	27374721	27375930	+	0	NA	promoter-TSS (NR_024553)	promoter-TSS (NR_024553)	49	NR_024553	7754		NR_002722		ZNF204P	ZNF184-Lp|ZNF204|ZNF315P|b24o18.1	zinc finger protein 204, pseudogene	pseudo
48241	chr12	8251551	8251850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8754	NR_024254	653113		NR_024254		FAM86FP	-	family with sequence similarity 86, member A pseudogene	pseudo
129587	chr2	70073571	70074400	+	0	NA	intron (NR_033872, intron 4 of 10)	AluY|SINE|Alu	13030	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
7671	chr1	35768271	35768650	+	0	NA	intron (NM_022111, intron 1 of 24)	AluJb|SINE|Alu	1518	NM_022111	63967		NM_022111	ENSG00000092853	CLSPN	-	claspin	protein-coding
101649	chr17	68257471	68257630	+	0	NA	TTS (NM_001033572)	TTS (NM_001033572)	-1620	NM_001352903	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
165615	chr3	101687801	101688100	+	0	NA	Intergenic	Intergenic	-1232	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
231647	chr9	131625771	131626330	+	0	NA	exon (NM_001377937, exon 9 of 23)	exon (NM_001377937, exon 9 of 23)	25353	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
5618	chr1	26156351	26156890	+	0	NA	Intergenic	Intergenic	-2459	NM_024869	79927		NM_024869	ENSG00000197245	FAM110D	GRRP1	family with sequence similarity 110 member D	protein-coding
127460	chr2	42205451	42205780	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-35384	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
159823	chr3	16399551	16399650	+	0	NA	intron (NM_015150, intron 4 of 9)	L2|LINE|L2	114099	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
80567	chr16	2852601	2853550	+	0	NA	3' UTR (NM_022119, exon 6 of 6)	3' UTR (NM_022119, exon 6 of 6)	5095	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
226865	chr9	78074521	78075230	+	0	NA	Intergenic	Intergenic	-43064	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
147002	chr20	53569871	53570030	+	0	NA	intron (NM_001385034, intron 4 of 4)	AluJr|SINE|Alu	17180	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
3964	chr1	18653151	18653850	+	0	NA	intron (NM_001135254, intron 4 of 8)	intron (NM_001135254, intron 4 of 8)	22654	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
206228	chr7	28955771	28956250	+	0	NA	exon (NM_014817, exon 1 of 1)	exon (NM_014817, exon 1 of 1)	2320	NM_014817	9865		NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
217143	chr8	25509871	25510180	+	0	NA	Intergenic	Intergenic	50792	NM_152562	157313		NM_152562	ENSG00000184661	CDCA2	PPP1R81|Repo-Man	cell division cycle associated 2	protein-coding
236582	chrX	72942721	72943500	+	0	NA	non-coding (NR_026594, exon 1 of 1).2	non-coding (NR_026594, exon 1 of 1).2	640	NR_026594	653687		NR_026594		FAM226B	CXorf50B|LINC00246B|NCRNA00246B	family with sequence similarity 226 member B	ncRNA
151832	chr22	18424021	18424280	+	0	NA	intron (NR_136560, intron 1 of 11)	intron (NR_136560, intron 1 of 11)	1906	NR_136560	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
65013	chr14	38990071	38990250	+	0	NA	Intergenic	MER107|DNA|hAT-Charlie	-73278	NR_039982	283547		NR_039982	ENSG00000259070	LINC00639	-	long intergenic non-protein coding RNA 639	ncRNA
179798	chr5	391051	391350	+	0	NA	intron (NR_165159, intron 6 of 13)	intron (NR_165159, intron 6 of 13)	51960	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
200457	chr6	135104071	135104230	+	0	NA	Intergenic	Intergenic	-49328	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
127791	chr2	44227121	44227850	+	0	NA	intron (NM_177968, intron 5 of 5)	intron (NM_177968, intron 5 of 5)	-47995	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
75217	chr15	64848121	64848380	+	0	NA	intron (NM_001195059, intron 1 of 4)	MIRb|SINE|MIR	6335	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
130459	chr2	85536551	85536650	+	0	NA	TTS (NR_038942)	TTS (NR_038942)	2286	NR_038942	100630918		NR_038942	ENSG00000286532	PARTICL	PARTICLE	promoter of MAT2A antisense radiation-induced circulating long non-coding RNA	ncRNA
109051	chr18	79799721	79799980	+	0	NA	Intergenic	Intergenic	-63818	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
176137	chr4	83115801	83116030	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1186	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
16572	chr1	155001601	155002990	+	0	NA	promoter-TSS (NM_001252406)	promoter-TSS (NM_001252406)	-354	NM_001377452	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
219550	chr8	78232301	78232530	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-283925	NM_006823	5569		NM_006823	ENSG00000171033	PKIA	PRKACN1	cAMP-dependent protein kinase inhibitor alpha	protein-coding
216753	chr8	22467701	22468300	+	0	NA	intron (NM_005605, intron 1 of 13)	MLT1A0|LTR|ERVL-MaLR	26922	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
168403	chr3	142223701	142224100	+	0	NA	intron (NM_001039547, intron 1 of 15)	intron (NM_001039547, intron 1 of 15)	1685	NR_033289	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
35427	chr11	1434501	1435230	+	0	NA	intron (NM_001256630, intron 1 of 19)	intron (NM_001256630, intron 1 of 19)	23713	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
28324	chr10	46298921	46299450	+	0	NA	intron (NM_001278688, intron 9 of 16)	L1M4|LINE|L1	12188	NM_001278688	195977		NM_001278688	ENSG00000274209	ANTXRL	-	ANTXR like	protein-coding
165488	chr3	99866351	99867000	+	0	NA	intron (NM_182909, intron 4 of 5)	intron (NM_182909, intron 4 of 5)	9498	NM_001370247	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
238749	chrX	154337971	154338130	+	0	NA	Intergenic	AluSz|SINE|Alu	32880	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
59821	chr13	30415371	30415750	+	0	NA	Intergenic	L1PA16|LINE|L1	6684	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
108747	chr18	77111071	77111430	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	21533	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
157282	chr22	44180451	44182200	+	0	NA	intron (NM_022141, intron 1 of 13)	intron (NM_022141, intron 1 of 13)	400	NM_022141	64098		NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding
214370	chr7	149692551	149692850	+	0	NA	Intergenic	CpG	-22311	NM_001290187	84626		NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
177695	chr4	121875821	121876180	+	0	NA	3' UTR (NM_001130698, exon 12 of 12)	3' UTR (NM_001130698, exon 12 of 12)	-5503	NM_018190	55212		NM_018190	ENSG00000138686	BBS7	BBS2L1	Bardet-Biedl syndrome 7	protein-coding
162925	chr3	49428001	49428200	+	0	NA	intron (NM_032316, intron 1 of 5)	AluSq|SINE|Alu	1224	NM_032316	84276		NM_032316	ENSG00000145029	NICN1	-	nicolin 1, tubulin polyglutamylase complex subunit	protein-coding
226951	chr9	79673671	79674130	+	0	NA	intron (NR_104239, intron 9 of 20)	intron (NR_104239, intron 9 of 20)	100723	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
118358	chr19	35650551	35650850	+	0	NA	intron (NM_001863, intron 1 of 3)	AluSx1|SINE|Alu	2377	NM_001863	1340		NM_001863	ENSG00000126267	COX6B1	COX6B|COXG|COXVIb1|MC4DN7	cytochrome c oxidase subunit 6B1	protein-coding
150050	chr21	37379621	37379980	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	12243	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
216904	chr8	22691601	22692780	+	0	NA	intron (NM_004430, intron 1 of 1)	CpG	174	NM_001199880	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
214845	chr7	151306351	151306650	+	0	NA	Intergenic	Intergenic	-29351	NM_003078	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
40780	chr11	64880201	64881750	+	0	NA	Intergenic	Intergenic	-1262	NM_001282445	10938		NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH domain containing 1	protein-coding
6060	chr1	27140171	27141000	+	0	NA	intron (NM_003047, intron 1 of 11)	MIR1_Amn|SINE|MIR	14540	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
117993	chr19	33777701	33778830	+	0	NA	Intergenic	CpG	-18605	NM_001129995	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
160194	chr3	23808221	23808730	+	0	NA	intron (NM_182666, intron 2 of 4)	intron (NM_182666, intron 2 of 4)	-1570	NR_046652	100874092		NR_046652	ENSG00000223791	UBE2E1-AS1	-	UBE2E1 antisense RNA 1	ncRNA
157913	chr22	49773771	49774180	+	0	NA	non-coding (NR_146334, exon 13 of 13)	non-coding (NR_146334, exon 13 of 13)	50356	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
68161	chr14	75658271	75659280	+	0	NA	intron (NM_007176, intron 1 of 4)	MER49|LTR|ERV1	2101	NM_007176	11161		NM_007176	ENSG00000133935	ERG28	C14orf1|NET51	ergosterol biosynthesis 28 homolog	protein-coding
128038	chr2	47401151	47401250	+	0	NA	Intergenic	Intergenic	-1867	NM_001258281	4436		NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2|LYNCH1|MMRCS2|MSH-2|hMSH2	mutS homolog 2	protein-coding
103668	chr17	78787521	78788380	+	0	NA	intron (NM_001385179, intron 20 of 20)	MLT1C|LTR|ERVL-MaLR	-5608	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
34167	chr10	128079821	128080080	+	0	NA	intron (NM_001323354, intron 19 of 19)	intron (NM_001323354, intron 19 of 19)	-17525	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
88052	chr16	81453101	81453900	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	8330	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
90734	chr17	2023651	2024300	+	0	NA	intron (NM_178568, intron 1 of 1)	CpG	1359	NM_178568	146760		NM_178568	ENSG00000185924	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor like 1	protein-coding
33242	chr10	114304401	114305650	+	0	NA	intron (NM_032550, intron 10 of 18)	intron (NM_032550, intron 10 of 18)	65411	NM_001320804	340706		NM_198496	ENSG00000165816	VWA2	AMACO|CCSP-2|CCSP2|NET42	von Willebrand factor A domain containing 2	protein-coding
89000	chr16	87955821	87957180	+	0	NA	intron (NM_001384920, intron 2 of 13)	intron (NM_001384920, intron 2 of 13)	-3371	NM_001173542	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
216654	chr8	22128171	22128730	+	0	NA	intron (NM_018411, intron 2 of 17)	intron (NM_018411, intron 2 of 17)	2560	NM_005144	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
226601	chr9	73158871	73159030	+	0	NA	intron (NM_000700, intron 3 of 12)	intron (NM_000700, intron 3 of 12)	7085	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
189121	chr5	170604151	170604250	+	0	NA	intron (NM_014592, intron 1 of 7)	intron (NM_014592, intron 1 of 7)	77270	NR_136214	105377716		NR_136214	ENSG00000253591	KCNIP1-AS1	-	KCNIP1 antisense RNA 1	ncRNA
59128	chr13	21389021	21389600	+	0	NA	intron (NM_153251, intron 8 of 11)	intron (NM_153251, intron 8 of 11)	-44451	NR_103841	100652865		NR_103840	ENSG00000224429	LINC00539	LINC00422	long intergenic non-protein coding RNA 539	ncRNA
93341	chr17	18214501	18215100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10835	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
175385	chr4	70709951	70710050	+	0	NA	intron (NM_001130709, intron 1 of 11)	intron (NM_001130709, intron 1 of 11)	5063	NM_001130709	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
140051	chr2	231392121	231392580	+	0	NA	Intergenic	LTR82B|LTR|ERVL	-3360	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
88544	chr16	85449921	85450180	+	0	NA	Intergenic	Intergenic	-143725	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
26855	chr10	24884621	24884880	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	67856	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
68868	chr14	91310221	91311000	+	0	NA	intron (NM_001080414, intron 15 of 29)	AluJr|SINE|Alu	-56730	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
166016	chr3	108293921	108294180	+	0	NA	Intergenic	Intergenic	-2440	NM_001282559	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
181479	chr5	42908471	42909300	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	84448	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
14503	chr1	144566001	144566580	+	0	NA	Intergenic	MER72|LTR|ERV1	-14347	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
5970	chr1	26923121	26923400	+	0	NA	intron (NM_006600, intron 1 of 8)	MIR|SINE|MIR	1517	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
160929	chr3	36879171	36879350	+	0	NA	intron (NM_014831, intron 7 of 22)	intron (NM_014831, intron 7 of 22)	-56760	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
128974	chr2	64661771	64661930	+	0	NA	Intergenic	Intergenic	-7937	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
214527	chr7	150509371	150509600	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-5387	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
220394	chr8	100247171	100247330	+	0	NA	Intergenic	Intergenic	54943	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
56103	chr12	110727571	110728730	+	0	NA	intron (NM_002710, intron 3 of 6)	AluYh3|SINE|Alu	14741	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
43716	chr11	86043051	86043550	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	25784	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
47514	chr12	4135921	4136250	+	0	NA	Intergenic	Intergenic	-137677	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
203190	chr6	167288701	167289000	+	0	NA	Intergenic	Intergenic	-2465	NM_018974	54346		NM_018974	ENSG00000112494	UNC93A	Unc-93A|dJ366N23.1|dJ366N23.2	unc-93 homolog A	protein-coding
66955	chr14	65860971	65861850	+	0	NA	Intergenic	Intergenic	390308	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
72808	chr15	40082501	40082800	+	0	NA	Intergenic	Intergenic	23436	NM_001003942	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
94825	chr17	31389451	31390130	+	0	NA	Intergenic	Tigger19b|DNA|TcMar-Tigger	-1885	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
28968	chr10	63244451	63245550	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSx1|SINE|Alu	24223	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
103696	chr17	78814271	78814630	+	0	NA	exon (NM_001385169, exon 11 of 21)	exon (NM_001385169, exon 11 of 21)	26364	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
205961	chr7	26158501	26158930	+	0	NA	intron (NM_004289, intron 1 of 3)	intron (NM_004289, intron 1 of 3)	6517	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
235554	chrX	47249051	47249700	+	0	NA	Intergenic	Intergenic	16366	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
118671	chr19	37653821	37654480	+	0	NA	intron (NM_014898, intron 2 of 5)	MIR|SINE|MIR	1315	NM_001320669	22835		NM_014898	ENSG00000120784	ZFP30	ZNF745	ZFP30 zinc finger protein	protein-coding
174489	chr4	39944271	39944630	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluSp|SINE|Alu	33461	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
212223	chr7	120958651	120958950	+	0	NA	intron (NM_019071, intron 4 of 11)	L2|LINE|L2	8023	NM_019071	54556		NM_019071	ENSG00000071243	ING3	Eaf4|ING2|MEAF4|p47ING3	inhibitor of growth family member 3	protein-coding
145874	chr20	45940371	45941750	+	0	NA	exon (NM_022104, exon 7 of 17)	exon (NM_022104, exon 7 of 17)	6377	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
13315	chr1	113453051	113453150	+	0	NA	intron (NM_152900, intron 1 of 20)	intron (NM_152900, intron 1 of 20)	62585	NM_152900	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
85072	chr16	32285371	32285600	+	0	NA	Intergenic	Intergenic	4496	NR_033866	390705		NR_033866		LOC390705	-	protein phosphatase 2 regulatory subunit B'', beta pseudogene	pseudo
232271	chr9	134422171	134422480	+	0	NA	intron (NM_001291921, intron 5 of 8)	intron (NM_001291921, intron 5 of 8)	15765	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
212347	chr7	127504851	127504950	+	0	NA	Intergenic	L1MEd|LINE|L1	28017	NR_110024	100506682		NR_110024	ENSG00000226770	LINC03012	-	long intergenic non-protein coding RNA 3012	ncRNA
201624	chr6	149443971	149444830	+	0	NA	Intergenic	Intergenic	40614	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
72101	chr15	28932151	28932450	+	0	NA	intron (NM_001353790, intron 2 of 14)	intron (NM_001353790, intron 2 of 14)	-1704	NM_001353791	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
138623	chr2	210008121	210008380	+	0	NA	intron (NM_001278282, intron 2 of 6)	intron (NM_001278282, intron 2 of 6)	5612	NM_199229	6120		NM_006916	ENSG00000197713	RPE	RPE2-1	ribulose-5-phosphate-3-epimerase	protein-coding
202758	chr6	159041821	159043090	+	0	NA	promoter-TSS (NM_001278733)	promoter-TSS (NM_001278733)	-102	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
146123	chr20	48623401	48623800	+	0	NA	TTS (NM_020820)	TTS (NM_020820)	204399	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
191188	chr6	5251051	5251150	+	0	NA	intron (NR_104417, intron 1 of 3)	intron (NR_104417, intron 1 of 3)	9850	NM_001318782	57128		NM_020408	ENSG00000214113	LYRM4	C6orf149|CGI-203|COXPD19|ISD11	LYR motif containing 4	protein-coding
205855	chr7	24943171	24943530	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	36828	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
60683	chr13	43782851	43782950	+	0	NA	intron (NM_001347966, intron 1 of 17)	intron (NM_001347966, intron 1 of 17)	4072	NM_001347964	55068		NM_017993	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
36295	chr11	3827601	3828400	+	0	NA	exon (NM_001665, exon 2 of 2)	exon (NM_001665, exon 2 of 2)	12959	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
1289	chr1	2331571	2331930	+	0	NA	intron (NM_024848, intron 12 of 13)	CpG	20911	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
52541	chr12	56129101	56130800	+	0	NA	intron (NM_015292, intron 1 of 30)	AluSg|SINE|Alu	1683	NM_015292	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
54172	chr12	76971501	76971700	+	0	NA	Intergenic	L1PB1|LINE|L1	-92581	NM_001300965	1466		NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine rich protein 2	protein-coding
209732	chr7	87157101	87157530	+	0	NA	intron (NM_021145, intron 3 of 19)	intron (NM_021145, intron 3 of 19)	4761	NM_021145	9988		NM_021145	ENSG00000135164	DMTF1	DMP1|DMTF|MRUL|hDMP1	cyclin D binding myb like transcription factor 1	protein-coding
217392	chr8	28322401	28322830	+	0	NA	intron (NM_006228, intron 1 of 3)	MIRb|SINE|MIR	5347	NM_006228	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
124595	chr2	864851	865350	+	0	NA	intron (NR_033880, intron 1 of 3)	MLT1D|LTR|ERVL-MaLR	3326	NR_111963	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
179766	chr5	273151	273250	+	0	NA	intron (NM_001267557, intron 2 of 3)	intron (NM_001267557, intron 2 of 3)	1554	NM_001267559	10016		NM_013232	ENSG00000249915	PDCD6	ALG-2|ALG2|PEF1B	programmed cell death 6	protein-coding
136048	chr2	172553421	172553880	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1723	NR_103731	5163		NM_002610	ENSG00000152256	PDK1	-	pyruvate dehydrogenase kinase 1	protein-coding
103940	chr17	79844101	79844300	+	0	NA	Intergenic	CpG	-4760	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
138724	chr2	213150371	213150700	+	0	NA	promoter-TSS (NM_016260)	promoter-TSS (NM_016260)	-98	NM_001371275	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
66437	chr14	61532221	61532480	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	37844	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
132455	chr2	105862821	105863100	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	11113	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
201723	chr6	149774751	149774850	+	0	NA	intron (NM_001252050, intron 3 of 6)	AluY|SINE|Alu	25059	NM_001360456	5110		NM_005389	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
36260	chr11	3782301	3783730	+	0	NA	intron (NR_157590, intron 1 of 31)	intron (NR_157590, intron 1 of 31)	14531	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
87211	chr16	69452271	69452430	+	0	NA	intron (NM_030579, intron 3 of 4)	intron (NM_030579, intron 3 of 4)	27731	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
58389	chr12	131891901	131892230	+	0	NA	Intergenic	AluYk3|SINE|Alu	-2557	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
77036	chr15	78757201	78757750	+	0	NA	Intergenic	MIRb|SINE|MIR	5438	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
215682	chr8	747621	748030	+	0	NA	intron (NM_001346810, intron 1 of 14)	intron (NM_001346810, intron 1 of 14)	9277	NR_134292	401442		NR_134292	ENSG00000282375	LOC401442	-	uncharacterized LOC401442	ncRNA
198118	chr6	90388471	90388630	+	0	NA	Intergenic	Intergenic	75808	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
186820	chr5	139395321	139396130	+	0	NA	promoter-TSS (NM_001161546)	promoter-TSS (NM_001161546)	-621	NM_001161546	389333		NM_001161546	ENSG00000228672	PROB1	C5orf65	proline rich basic protein 1	protein-coding
226739	chr9	76008571	76008930	+	0	NA	intron (NM_006200, intron 3 of 20)	intron (NM_006200, intron 3 of 20)	118077	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
211258	chr7	102677871	102678880	+	0	NA	TTS (NR_146066)	TTS (NR_146066)	-6640	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
129806	chr2	71460821	71461080	+	0	NA	intron (NM_003494, intron 1 of 54)	(A)n|Simple_repeat|Simple_repeat	-5749	NM_001130984	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
1458	chr1	2661871	2662230	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-29034	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
76543	chr15	75200371	75201070	+	0	NA	Intergenic	MIR3|SINE|MIR	-1162	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
118894	chr19	38693501	38694350	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	46276	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
158814	chr3	9733921	9734550	+	0	NA	exon (NM_004634, exon 2 of 14)	exon (NM_004634, exon 2 of 14)	2485	NM_004634	7862		NM_004634	ENSG00000156983	BRPF1	BR140|IDDDFP	bromodomain and PHD finger containing 1	protein-coding
47773	chr12	6553051	6553500	+	0	NA	intron (NR_036467, intron 1 of 9)	intron (NR_036467, intron 1 of 9)	2767	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
123638	chr19	54632271	54632430	+	0	NA	intron (NM_001081637, intron 5 of 14)	intron (NM_001081637, intron 5 of 14)	1833	NM_001278398	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
108068	chr18	59897251	59897780	+	0	NA	Intergenic	AluJb|SINE|Alu	-2481	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
157380	chr22	44718471	44718630	+	0	NA	intron (NM_001017530, intron 2 of 7)	L1MB7|LINE|L1	16346	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
214272	chr7	148986601	148988380	+	0	NA	promoter-TSS (NR_130107)	promoter-TSS (NR_130107)	-37	NR_130107	102723099		NR_130107	ENSG00000281189	GHET1	lncRNA-GHET1	gastric carcinoma proliferation enhancing transcript 1	ncRNA
145691	chr20	45012001	45012300	+	0	NA	intron (NM_006282, intron 9 of 10)	AluSc|SINE|Alu	45638	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
8857	chr1	43389351	43390530	+	0	NA	promoter-TSS (NM_015284)	promoter-TSS (NM_015284)	41	NM_001365999	23334		NM_015284	ENSG00000198198	SZT2	C1orf84|DEE18|EIEE18|KIAA0467|KICS1|SZT2A|SZT2B	SZT2 subunit of KICSTOR complex	protein-coding
152408	chr22	20562021	20562480	+	0	NA	intron (NM_001003891, intron 5 of 17)	L1MEd|LINE|L1	54203	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
54324	chr12	89597871	89598230	+	0	NA	intron (NM_001366521, intron 20 of 20)	(A)n|Simple_repeat|Simple_repeat	-71788	NM_001199782	100528030		NM_001199781	ENSG00000259075	POC1B-GALNT4	GALNT4|GalNAc-T4	POC1B-GALNT4 readthrough	protein-coding
25152	chr10	4824901	4825100	+	0	NA	Intergenic	L2a|LINE|L2	-1177	NR_073127	83592		NM_031436	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|HTSP1|LoopADR|TAKR|hTSP|htAKR	aldo-keto reductase family 1 member E2	protein-coding
93440	chr17	18642901	18643300	+	0	NA	intron (NM_001039397, intron 1 of 9)	intron (NM_001039397, intron 1 of 9)	1327	NM_001039397	254272		NM_001039397	ENSG00000189375	TBC1D28	-	TBC1 domain family member 28	protein-coding
17426	chr1	156658851	156659230	+	0	NA	exon (NM_021948, exon 14 of 14)	exon (NM_021948, exon 14 of 14)	16923	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
178450	chr4	148053671	148053830	+	0	NA	intron (NM_024605, intron 20 of 22)	intron (NM_024605, intron 20 of 22)	271155	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
236534	chrX	72123401	72124000	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	8215	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
203243	chr6	168991271	168991630	+	0	NA	Intergenic	Intergenic	-27068	NR_136250	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
151884	chr22	18847201	18847400	+	0	NA	Intergenic	Intergenic	-2818	NR_135922	102725072		NR_135922	ENSG00000293159	POM121L15P	-	POM121 transmembrane nucleoporin like 15, pseudogene	pseudo
68308	chr14	77319201	77319450	+	0	NA	intron (NM_013382, intron 1 of 20)	HERVL40-int|LTR|ERVL	1558	NM_013382	29954		NM_013382	ENSG00000009830	POMT2	LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2	protein O-mannosyltransferase 2	protein-coding
30750	chr10	84196851	84196950	+	0	NA	intron (NM_033100, intron 3 of 16)	intron (NM_033100, intron 3 of 16)	2363	NM_033100	92211		NM_033100	ENSG00000148600	CDHR1	CORD15|PCDH21|PRCAD|RP65	cadherin related family member 1	protein-coding
16223	chr1	153927601	153928630	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5143	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
128529	chr2	60775401	60775600	+	0	NA	intron (NM_022894, intron 8 of 21)	intron (NM_022894, intron 8 of 21)	19232	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
133329	chr2	113900371	113900850	+	0	NA	intron (NM_001277140, intron 1 of 11)	MIRb|SINE|MIR	-9618	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
160574	chr3	30699821	30700280	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	93449	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
203327	chr6	170184421	170184680	+	0	NA	Intergenic	(ACAGCC)n|Simple_repeat|Simple_repeat	23908	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
155690	chr22	39078001	39078900	+	0	NA	intron (NR_146179, intron 1 of 2)	MIR|SINE|MIR	1175	NM_001349438	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
115610	chr19	16071651	16071750	+	0	NA	intron (NM_001367836, intron 1 of 8)	intron (NM_001367836, intron 1 of 8)	4162	NM_001367836	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
89599	chr16	89289151	89290300	+	0	NA	intron (NR_045839, intron 8 of 9)	intron (NR_045839, intron 8 of 9)	-6403	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
147381	chr20	58627421	58628100	+	0	NA	Intergenic	MIR|SINE|MIR	-7012	NR_125359	79160		NM_024314	ENSG00000268941	LINC01711	-	long intergenic non-protein coding RNA 1711	ncRNA
66729	chr14	64468471	64468630	+	0	NA	exon (NM_004857, exon 2 of 2)	exon (NM_004857, exon 2 of 2)	3051	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
57654	chr12	122528821	122529080	+	0	NA	intron (NM_014708, intron 1 of 63)	AluSq|SINE|Alu	1701	NM_014708	9735		NM_014708	ENSG00000184445	KNTC1	ROD	kinetochore associated 1	protein-coding
215116	chr7	155341071	155341600	+	0	NA	Intergenic	Intergenic	26598	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
107430	chr18	46207921	46208530	+	0	NA	intron (NM_145055, intron 1 of 4)	L2|LINE|L2	34191	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
157234	chr22	43288701	43289400	+	0	NA	intron (NM_173050, intron 4 of 21)	intron (NM_173050, intron 4 of 21)	13108	NR_134582	101927447		NR_134582	ENSG00000203527	SCUBE1-AS1	-	SCUBE1 antisense RNA 1	ncRNA
187064	chr5	140118221	140118650	+	0	NA	3' UTR (NM_005859, exon 1 of 1)	3' UTR (NM_005859, exon 1 of 1)	4326	NM_005859	5813		NM_005859	ENSG00000185129	PURA	MRD31|NEDRIHF|PUR-ALPHA|PUR1|PURALPHA	purine rich element binding protein A	protein-coding
155946	chr22	39683151	39683450	+	0	NA	intron (NM_001003406, intron 34 of 35)	intron (NM_001003406, intron 34 of 35)	112547	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
39715	chr11	61758521	61758780	+	0	NA	promoter-TSS (NR_026882)	promoter-TSS (NR_026882)	-986	NR_026882	26070		NR_026882	ENSG00000124915	MYRF-AS1	DKFZP434K028	MYRF antisense RNA 1	ncRNA
206835	chr7	37338821	37339280	+	0	NA	intron (NM_014800, intron 2 of 21)	intron (NM_014800, intron 2 of 21)	14618	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
192245	chr6	20204001	20204200	+	0	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	8369	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
60585	chr13	41929021	41929430	+	0	NA	intron (NM_015058, intron 2 of 44)	AluJo|SINE|Alu	31860	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
190027	chr5	177503821	177504430	+	0	NA	exon (NM_001375794, exon 6 of 6)	exon (NM_001375794, exon 6 of 6)	5701	NM_001384137	79930		NM_024872	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
71251	chr14	105198471	105199180	+	0	NA	Intergenic	Intergenic	-17502	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
75259	chr15	64950651	64951080	+	0	NA	intron (NM_182703, intron 14 of 14)	intron (NM_182703, intron 14 of 14)	38605	NM_001127889	51324		NM_016630	ENSG00000090487	SPG21	ABHD21|ACP33|BM-019|GL010|MAST	SPG21 abhydrolase domain containing, maspardin	protein-coding
95156	chr17	35087851	35088300	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	1151	NR_037713	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
83081	chr16	22392951	22393280	+	0	NA	intron (NR_136333, intron 1 of 3)	L1PA16|LINE|L1	7346	NR_136333	105371130		NR_136333	ENSG00000293459	MFSD13B	-	major facilitator superfamily domain containing 13B (pseudogene)	pseudo
39674	chr11	61695851	61697100	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	16084	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
112920	chr19	7656951	7657580	+	0	NA	Intergenic	AluJr|SINE|Alu	-11784	NM_001385726	56729		NM_020415	ENSG00000104918	RETN	ADSF|FIZZ3|RENT|RETN1|RSTN|XCP1	resistin	protein-coding
40875	chr11	65109871	65111000	+	0	NA	intron (NR_073519, intron 7 of 9)	intron (NR_073519, intron 7 of 9)	-1419	NM_001277233	7108		NM_003273	ENSG00000149809	TM7SF2	ANG1|C14SR|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
1605	chr1	3654971	3655330	+	0	NA	intron (NM_001204185, intron 1 of 12)	AluSx1|SINE|Alu	2585	NM_001204187	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
67521	chr14	70990521	70991380	+	0	NA	intron (NM_014982, intron 7 of 35)	intron (NM_014982, intron 7 of 35)	83491	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
72924	chr15	40399421	40400150	+	0	NA	Intergenic	LTR12B|LTR|ERV1	-6010	NM_002225	3712		NM_002225	ENSG00000128928	IVD	ACAD2|IVDH	isovaleryl-CoA dehydrogenase	protein-coding
139136	chr2	219000171	219000730	+	0	NA	Intergenic	Intergenic	1258	NR_029867	494324		NR_029867	ENSG00000198973	MIR375	MIRN375|hsa-mir-375|miRNA375|mir-375	microRNA 375	ncRNA
180507	chr5	14331471	14331630	+	0	NA	intron (NR_134469, intron 10 of 56)	intron (NR_134469, intron 10 of 56)	-132433	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
161776	chr3	44985851	44986350	+	0	NA	intron (NR_023353, intron 1 of 6)	LTR12C|LTR|ERV1	9851	NR_023353	23016		NM_015004	ENSG00000075914	EXOSC7	EAP1|RRP42|Rrp42p|hRrp42p|p8	exosome component 7	protein-coding
225759	chr9	37295801	37296050	+	0	NA	intron (NM_001289119, intron 2 of 8)	intron (NM_001289119, intron 2 of 8)	-126771	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
119361	chr19	40089851	40091530	+	0	NA	intron (NM_001142578, intron 1 of 5).2	CpG	213	NM_001010880	284323		NM_001010880	ENSG00000197782	ZNF780A	ZNF780	zinc finger protein 780A	protein-coding
76645	chr15	75627671	75628030	+	0	NA	Intergenic	AluJb|SINE|Alu	-1472	NM_001042588	10073		NM_005701	ENSG00000169371	SNUPN	KPNBL|RNUT1|Snurportin1	snurportin 1	protein-coding
68742	chr14	91022221	91023500	+	0	NA	intron (NM_001322228, intron 1 of 15)	AluSg|SINE|Alu	37264	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
39927	chr11	62530671	62531230	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	14714	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
95398	chr17	35930401	35931650	+	0	NA	promoter-TSS (NM_001330194)	promoter-TSS (NM_001330194)	-249	NM_001330194	201299		NM_145654	ENSG00000278023	RDM1	RAD52B	RAD52 motif containing 1	protein-coding
209683	chr7	80288671	80288830	+	0	NA	Intergenic	L1M1|LINE|L1	85689	NR_110075	101927269		NR_110075		LOC101927269	-	uncharacterized LOC101927269	ncRNA
67670	chr14	73125901	73126100	+	0	NA	Intergenic	Intergenic	-10507	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
180886	chr5	33969871	33970030	+	0	NA	intron (NM_016180, intron 2 of 6)	intron (NM_016180, intron 2 of 6)	14743	NM_001297417	51151		NM_016180	ENSG00000164175	SLC45A2	1A1|AIM1|MATP|OCA4|SHEP5	solute carrier family 45 member 2	protein-coding
229762	chr9	125189161	125190880	+	0	NA	promoter-TSS (NM_002721)	promoter-TSS (NM_002721)	-81	NM_001123369	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
57333	chr12	121696721	121698480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-15152	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
190249	chr5	178628721	178629630	+	0	NA	Intergenic	Intergenic	-2125	NM_020666	57396		NM_020666	ENSG00000113240	CLK4	-	CDC like kinase 4	protein-coding
70230	chr14	100686001	100686400	+	0	NA	Intergenic	Intergenic	28932	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
7929	chr1	37496751	37497250	+	0	NA	intron (NR_073092, intron 6 of 8)	intron (NR_073092, intron 6 of 8)	3994	NR_049844	100847010		NR_049844	ENSG00000263675	MIR5581	-	microRNA 5581	ncRNA
228544	chr9	101459101	101459500	+	0	NA	Intergenic	Intergenic	-9139	NR_121573	101928470		NR_121573	ENSG00000225376	TMEM246-AS1	-	TMEM246 antisense RNA 1	ncRNA
233344	chr9	137448151	137448250	+	0	NA	3' UTR (NM_001178064, exon 15 of 15)	3' UTR (NM_001178064, exon 15 of 15)	1886	NR_106964	102466223		NR_106964	ENSG00000284317	MIR7114	hsa-mir-7114	microRNA 7114	ncRNA
96462	chr17	40226651	40226950	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSg|SINE|Alu	7496	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
217290	chr8	27368671	27368930	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	43236	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
62686	chr13	102686171	102686630	+	0	NA	exon (NM_001010977, exon 4 of 4)	exon (NM_001010977, exon 4 of 4)	8121	NM_001010977	196541		NM_001010977	ENSG00000139780	METTL21C	C13orf39	methyltransferase 21C, AARS1 lysine	protein-coding
150707	chr21	43723471	43723630	+	0	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	4421	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
207414	chr7	44431351	44431650	+	0	NA	intron (NM_015332, intron 2 of 5)	intron (NM_015332, intron 2 of 5)	59158	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
136767	chr2	181430451	181430950	+	0	NA	Intergenic	MER41B|LTR|ERV1	-26192	NM_001316312	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
78279	chr15	90875521	90875780	+	0	NA	non-coding (NR_168464, exon 2 of 16)	non-coding (NR_168464, exon 2 of 16)	2796	NM_001382621	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
206769	chr7	36710101	36710500	+	0	NA	intron (NM_001177506, intron 1 of 21)	MLT1E1A|LTR|ERVL-MaLR	14194	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
139614	chr2	225040171	225040400	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	2183	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
194823	chr6	34295701	34296330	+	0	NA	intron (NM_006703, intron 2 of 4)	intron (NM_006703, intron 2 of 4)	-46907	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
175157	chr4	55553101	55553830	+	0	NA	Intergenic	MER51A|LTR|ERV1	-6556	NM_004898	9575		NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
54968	chr12	96305671	96305900	+	0	NA	intron (NM_002595, intron 5 of 16)	AluJo|SINE|Alu	50287	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
72677	chr15	38546951	38547350	+	0	NA	intron (NM_001128602, intron 2 of 15)	L3|LINE|CR1	17664	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
143148	chr20	23979701	23980150	+	0	NA	Intergenic	Intergenic	6950	NM_178312	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
215733	chr8	1780921	1781680	+	0	NA	3' UTR (NM_018941, exon 3 of 3)	3' UTR (NM_018941, exon 3 of 3)	-16716	NR_134303	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
193976	chr6	31727421	31728250	+	0	NA	intron (NM_001303008, intron 5 of 6).6	intron (NM_001303008, intron 5 of 6).6	1464	NM_001303007	23564		NM_013974	ENSG00000213722	DDAH2	DDAH|DDAHII|G6a|HEL-S-277|NG30	DDAH family member 2, ADMA-independent	protein-coding
98176	chr17	46099401	46099780	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	93192	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
137483	chr2	197132921	197133480	+	0	NA	intron (NM_153697, intron 4 of 9)	MLT2F|LTR|ERVL	-64791	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
124175	chr19	56124621	56124950	+	0	NA	Intergenic	L1MB3|LINE|L1	-3490	NM_001002836	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
121456	chr19	47043651	47044100	+	0	NA	intron (NM_002517, intron 11 of 11)	AluJr|SINE|Alu	4749	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
72368	chr15	31355821	31356250	+	0	NA	intron (NM_001302461, intron 1 of 1).3	L1PA15|LINE|L1	29200	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
220858	chr8	103373101	103373530	+	0	NA	intron (NM_001256099, intron 1 of 3)	intron (NM_001256099, intron 1 of 3)	808	NM_001256099	115908		NM_138455	ENSG00000164932	CTHRC1	-	collagen triple helix repeat containing 1	protein-coding
171841	chr4	699121	700300	+	0	NA	Intergenic	Intergenic	-6122	NM_006315	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
22095	chr1	211578601	211580480	+	0	NA	promoter-TSS (NM_021194)	promoter-TSS (NM_021194)	-379	NM_021194	7779		NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
24389	chr1	241998401	241998750	+	0	NA	exon (NM_001004343, exon 3 of 4)	exon (NM_001004343, exon 3 of 4)	523	NM_001004343	440738		NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule associated protein 1 light chain 3 gamma	protein-coding
142706	chr20	8213551	8214280	+	0	NA	intron (NM_015192, intron 2 of 31)	intron (NM_015192, intron 2 of 31)	-34789	NR_046809	100874337		NR_046809	ENSG00000225479	PLCB1-IT1	-	PLCB1 intronic transcript 1	ncRNA
197125	chr6	57358501	57358930	+	0	NA	intron (NM_000947, intron 5 of 13)	intron (NM_000947, intron 5 of 13)	-31417	NR_036097	100422884		NR_036097	ENSG00000212017	MIR548U	-	microRNA 548u	ncRNA
108096	chr18	61926421	61927080	+	0	NA	Intergenic	Intergenic	-33743	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
61484	chr13	52454521	52456100	+	0	NA	promoter-TSS (NM_001098525)	promoter-TSS (NM_001098525)	-50	NM_001098525	26586		NM_018204	ENSG00000136108	CKAP2	LB1|TMAP|se20-10	cytoskeleton associated protein 2	protein-coding
225931	chr9	40648671	40649230	+	0	NA	Intergenic	Intergenic	148969	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
73692	chr15	44967671	44968200	+	0	NA	intron (NM_152448, intron 5 of 6)	L1ME4b|LINE|L1	11248	NM_152448	145645		NM_152448	ENSG00000167014	TERB2	C15orf43|SPGF59	telomere repeat binding bouquet formation protein 2	protein-coding
27263	chr10	29745851	29745950	+	0	NA	Intergenic	AluYa5|SINE|Alu	-8964	NM_001323599	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
19208	chr1	172443171	172444400	+	0	NA	intron (NM_002642, intron 1 of 1)	CpG	284	NM_153747	5279		NM_002642	ENSG00000135845	PIGC	GPI2|GPIBD16|MRT62	phosphatidylinositol glycan anchor biosynthesis class C	protein-coding
127873	chr2	45860371	45861030	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	209025	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
209784	chr7	87586421	87586680	+	0	NA	intron (NM_001348946, intron 3 of 27)	intron (NM_001348946, intron 3 of 27)	14334	NM_001348946	5243		NM_000927	ENSG00000085563	ABCB1	ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1|p-170	ATP binding cassette subfamily B member 1	protein-coding
4739	chr1	23423201	23423500	+	0	NA	intron (NM_003196, intron 1 of 10).2	intron (NM_003196, intron 1 of 10).2	1398	NM_003196	6920		NM_003196	ENSG00000204219	TCEA3	TFIIS|TFIIS.H	transcription elongation factor A3	protein-coding
26466	chr10	17599171	17599350	+	0	NA	intron (NM_014241, intron 5 of 6)	intron (NM_014241, intron 5 of 6)	18114	NM_014241	9200		NM_014241	ENSG00000165996	HACD1	CAP|CMYP11|MYONP|PTPLA	3-hydroxyacyl-CoA dehydratase 1	protein-coding
35568	chr11	1684551	1684850	+	0	NA	intron (NR_026642, intron 1 of 2).5	intron (NR_026642, intron 1 of 2).5	929	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
8555	chr1	41305601	41306000	+	0	NA	Intergenic	L2a|LINE|L2	-55634	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
22060	chr1	211324851	211325680	+	0	NA	Intergenic	AluJo|SINE|Alu	-1350	NM_004619	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
215634	chr8	205351	205950	+	0	NA	Intergenic	(TAACCC)n|Simple_repeat|Simple_repeat	-26487	NM_001287255	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
133023	chr2	111830421	111830680	+	0	NA	intron (NM_022662, intron 21 of 47)	L1MD1|LINE|L1	53643	NM_022662	64682		NM_022662	ENSG00000153107	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
31731	chr10	97713571	97715150	+	0	NA	exon (NM_031484, exon 1 of 2)	exon (NM_031484, exon 1 of 2)	630	NM_031484	83742		NM_031484	ENSG00000155254	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
35739	chr11	2097601	2097800	+	0	NA	Intergenic	Intergenic	36509	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
50068	chr12	44812051	44812800	+	0	NA	intron (NM_001145108, intron 3 of 19)	intron (NM_001145108, intron 3 of 19)	63236	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
141169	chr2	239269171	239269500	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-36127	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
203570	chr7	905471	906400	+	0	NA	intron (NM_006869, intron 4 of 10)	(GAAAGGA)n|Simple_repeat|Simple_repeat	14954	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
113071	chr19	8238271	8238830	+	0	NA	intron (NM_024552, intron 2 of 11)	intron (NM_024552, intron 2 of 11)	29180	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
28172	chr10	43683451	43683800	+	0	NA	Intergenic	Intergenic	-34744	NM_006973	7580		NM_006973	ENSG00000169740	ZNF32	KOX30|ZNF637|Zfp637	zinc finger protein 32	protein-coding
51766	chr12	53319921	53320300	+	0	NA	intron (NM_015665, intron 2 of 15)	AluSp|SINE|Alu	1500	NM_015665	8086		NM_015665	ENSG00000094914	AAAS	AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003	aladin WD repeat nucleoporin	protein-coding
80428	chr16	2635721	2636200	+	0	NA	Intergenic	Intergenic	-3022	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
139713	chr2	227766301	227766600	+	0	NA	Intergenic	MIR|SINE|MIR	-47392	NM_001130046	6364		NM_004591	ENSG00000115009	CCL20	CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38	C-C motif chemokine ligand 20	protein-coding
14605	chr1	145280501	145283350	+	0	NA	TTS (NR_104075)	TTS (NR_104075)	809	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
136510	chr2	177242721	177243530	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	12885	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
201590	chr6	149342171	149342730	+	0	NA	intron (NM_015093, intron 2 of 8)	intron (NM_015093, intron 2 of 8)	24150	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
209266	chr7	75903551	75903850	+	0	NA	Intergenic	AluYm1|SINE|Alu	-11455	NM_001382658	5447		NM_000941	ENSG00000127948	POR	CPR|CYPOR|P450R	cytochrome p450 oxidoreductase	protein-coding
151011	chr21	44453071	44453430	+	0	NA	intron (NR_047476, intron 2 of 3)	L1ME1|LINE|L1	2034	NR_047476	100861510		NR_047476	ENSG00000229356	LRRC3-DT	LRRC3-AS1	LRRC3 divergent transcript	ncRNA
86577	chr16	67232351	67233000	+	0	NA	intron (NM_001318202, intron 15 of 23)	AluJr|SINE|Alu	5545	NM_014187	29100		NM_014187	ENSG00000168701	TMEM208	HSPC171|SND2|hSND2	transmembrane protein 208	protein-coding
111091	chr19	3188101	3189580	+	0	NA	intron (NM_020170, intron 1 of 14)	intron (NM_020170, intron 1 of 14)	2910	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
33013	chr10	110640901	110641500	+	0	NA	Intergenic	MIRb|SINE|MIR	-3136	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
171223	chr3	195770921	195771700	+	0	NA	intron (NM_018406, intron 5 of 24)	intron (NM_018406, intron 5 of 24)	40619	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
67409	chr14	69803751	69804250	+	0	NA	Intergenic	L1MC4|LINE|L1	-6759	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
161749	chr3	44580971	44581230	+	0	NA	intron (NM_001288592, intron 5 of 5)	CpG	-3864	NM_001351733	110354863		NM_001351732		ZNF660-ZNF197	-	ZNF660-ZNF197 readthrough	protein-coding
105715	chr18	2697301	2697700	+	0	NA	intron (NM_015295, intron 9 of 47)	intron (NM_015295, intron 9 of 47)	41774	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
148080	chr20	63293101	63293300	+	0	NA	promoter-TSS (NM_020882)	promoter-TSS (NM_020882)	14	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
100193	chr17	58968671	58969050	+	0	NA	intron (NM_014906, intron 3 of 6)	intron (NM_014906, intron 3 of 6)	138020	NM_001353082	4591		NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
45162	chr11	117207751	117208250	+	0	NA	TTS (NM_001001522)	TTS (NM_001001522)	-6086	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
50994	chr12	49636901	49637630	+	0	NA	3' UTR (NM_001367835, exon 27 of 27)	3' UTR (NM_001367835, exon 27 of 27)	13704	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
119438	chr19	40395301	40395680	+	0	NA	exon (NM_181882, exon 7 of 7)	exon (NM_181882, exon 7 of 7)	-5309	NM_144685	147746		NM_144685	ENSG00000160396	HIPK4	-	homeodomain interacting protein kinase 4	protein-coding
171347	chr3	196053921	196054180	+	0	NA	intron (NM_001313966, intron 15 of 16)	AluSq|SINE|Alu	28040	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
16706	chr1	155230321	155230580	+	0	NA	Intergenic	AluY|SINE|Alu	-2916	NR_002188	2630		NR_002188	ENSG00000291137	GBA1LP	Beta-GC|GBA|GBAP|GBAP1|GC|GLUC	glucosylceramidase beta 1 like, pseudogene	pseudo
63427	chr13	114097021	114097600	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-19355	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
236086	chrX	56775271	56775900	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-38001	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
189890	chr5	177332401	177332930	+	0	NA	intron (NM_006816, intron 7 of 7)	intron (NM_006816, intron 7 of 7)	19003	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
147506	chr20	59177151	59178650	+	0	NA	intron (NM_178457, intron 1 of 5)	MLT1H|LTR|ERVL-MaLR	14079	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
80646	chr16	2996371	2997050	+	0	NA	Intergenic	Intergenic	-2245	NR_110948	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
79634	chr16	1152001	1154550	+	0	NA	promoter-TSS (NM_001005407)	promoter-TSS (NM_001005407)	34	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
46305	chr11	124922971	124923530	+	0	NA	intron (NM_152722, intron 4 of 6)	intron (NM_152722, intron 4 of 6)	4000	NM_001037558	641654		NM_001037558	ENSG00000221932	HEPN1	-	hepatocellular carcinoma, down-regulated 1	protein-coding
10562	chr1	67194151	67195200	+	0	NA	intron (NM_144701, intron 4 of 10)	intron (NM_144701, intron 4 of 10)	28221	NM_144701	149233		NM_144701	ENSG00000162594	IL23R	PSORS7	interleukin 23 receptor	protein-coding
158081	chr22	49975571	49977730	+	0	NA	Intergenic	L1MB7|LINE|L1	13784	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
191640	chr6	13304651	13305200	+	0	NA	TTS (NM_001143966)	TTS (NM_001143966)	-9339	NR_160971	100130357		NM_001242698	ENSG00000215022	LOC100130357	-	uncharacterized LOC100130357	ncRNA
24187	chr1	235923321	235924150	+	0	NA	Intergenic	Intergenic	-40022	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
182380	chr5	61055471	61055750	+	0	NA	intron (NM_174889, intron 1 of 3)	intron (NM_174889, intron 1 of 3)	-106706	NR_109908	101928630		NR_109908		SMIM15-AS1	CTC-436P18.1	SMIM15 antisense RNA 1	ncRNA
155979	chr22	39908711	39909230	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	7886	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
29049	chr10	67788351	67788830	+	0	NA	Intergenic	Intergenic	49589	NM_201262	56521		NM_021800	ENSG00000108176	DNAJC12	HPANBH4|JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
178922	chr4	158811101	158811300	+	0	NA	intron (NM_001366843, intron 1 of 17)	intron (NM_001366843, intron 1 of 17)	5361	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
13155	chr1	111723251	111723950	+	0	NA	3' UTR (NM_198926, exon 2 of 2)	3' UTR (NM_198926, exon 2 of 2)	15795	NM_019099	55924		NM_019099	ENSG00000197852	INKA2	C1orf183|FAM212B	inka box actin regulator 2	protein-coding
179232	chr4	174210451	174210550	+	0	NA	intron (NR_125896, intron 1 of 4)	intron (NR_125896, intron 1 of 4)	9898	NR_125896	101928509		NR_125896	ENSG00000248174	LINC02268	-	long intergenic non-protein coding RNA 2268	ncRNA
187408	chr5	141941351	141941950	+	0	NA	3' UTR (NM_001142603, exon 13 of 13)	3' UTR (NM_001142603, exon 13 of 13)	16552	NM_016580	51294		NM_016580	ENSG00000113555	PCDH12	DMJDS1|VE-cadherin-2|VECAD2	protocadherin 12	protein-coding
141010	chr2	238161171	238161680	+	0	NA	intron (NM_001291832, intron 1 of 7)	intron (NM_001291832, intron 1 of 7)	2455	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
85194	chr16	46953951	46954250	+	0	NA	Intergenic	AluJo|SINE|Alu	19574	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
237395	chrX	119564171	119564530	+	0	NA	intron (NM_001170570, intron 1 of 5)	AluSg|SINE|Alu	1059	NM_022101	63932		NM_022101	ENSG00000018610	STEEP1	CXorf56|MRX107|STEEP|XLID107	STING1 ER exit protein 1	protein-coding
166512	chr3	114331001	114331380	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-14621	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
65242	chr14	49891201	49891480	+	0	NA	Intergenic	AluJb|SINE|Alu	-1742	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
163768	chr3	52376851	52377730	+	0	NA	intron (NM_015512, intron 46 of 77)	L2a|LINE|L2	32718	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
148201	chr20	63561251	63561650	+	0	NA	exon (NM_001037335, exon 14 of 20)	exon (NM_001037335, exon 14 of 20)	6304	NM_033405	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
191996	chr6	16266571	16266930	+	0	NA	intron (NM_006877, intron 4 of 8)	AluYk3|SINE|Alu	28163	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
7345	chr1	32756271	32756900	+	0	NA	intron (NM_001369553, intron 1 of 6)	AluJb|SINE|Alu	2586	NM_001369553	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
149193	chr21	23922001	23922200	+	0	NA	Intergenic	LTR77|LTR|ERV1	399277	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
54094	chr12	76077601	76078500	+	0	NA	intron (NM_139207, intron 1 of 15)	L1MEg|LINE|L1	6635	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
193588	chr6	30688421	30689000	+	0	NA	non-coding (NR_073065, exon 4 of 4).4	non-coding (NR_073065, exon 4 of 4).4	-1503	NM_001134870	170954		NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding
91897	chr17	7291351	7291650	+	0	NA	intron (NM_015982, intron 3 of 8)	intron (NM_015982, intron 3 of 8)	3139	NM_015982	51087		NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y-box binding protein 2	protein-coding
172258	chr4	1401371	1401730	+	0	NA	Intergenic	Intergenic	4892	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
235418	chrX	45764221	45764700	+	0	NA	Intergenic	AluSx3|SINE|Alu	-17336	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
89825	chr16	89574301	89575200	+	0	NA	Intergenic	CpG	-1008	NM_014427	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
97944	chr17	45218671	45219430	+	0	NA	intron (NR_147507, intron 2 of 2)	intron (NR_147507, intron 2 of 2)	2715	NR_147507	339192		NR_147507	ENSG00000267121	FMNL1-DT	-	FMNL1 divergent transcript	ncRNA
168647	chr3	150373701	150373900	+	0	NA	Intergenic	L4_B_Mam|LINE|RTE-X	-34498	NM_014779	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
194241	chr6	32441021	32441280	+	0	NA	intron (NM_019111, intron 1 of 4).6	AluSc|SINE|Alu	1263	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
200943	chr6	139166621	139167430	+	0	NA	exon (NM_016217, exon 2 of 4)	exon (NM_016217, exon 2 of 4)	31945	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
18057	chr1	160631921	160632550	+	0	NA	intron (NR_104401, intron 3 of 5)	intron (NR_104401, intron 3 of 5)	14809	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
182234	chr5	56950501	56951080	+	0	NA	intron (NM_152622, intron 1 of 12)	CpG	1333	NM_001297599	166968		NM_152622	ENSG00000155545	MIER3	-	MIER family member 3	protein-coding
158200	chr22	50247721	50248700	+	0	NA	intron (NM_001159286, intron 11 of 18)	intron (NM_001159286, intron 11 of 18)	3055	NM_032019	83933		NM_032019	ENSG00000100429	HDAC10	HD10	histone deacetylase 10	protein-coding
235685	chrX	48694921	48695180	+	0	NA	promoter-TSS (NM_001282166)	promoter-TSS (NM_001282166)	-504	NM_001282166	6839		NM_003173	ENSG00000101945	SUV39H1	H3-K9-HMTase 1|KMT1A|MG44|SUV39H	SUV39H1 histone lysine methyltransferase	protein-coding
112452	chr19	6378501	6378700	+	0	NA	TTS (NM_002096)	TTS (NM_002096)	-2684	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
108404	chr18	69900301	69900530	+	0	NA	intron (NM_001303619, intron 1 of 4)	L1PA14|LINE|L1	47458	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
219109	chr8	65945851	65946830	+	0	NA	Intergenic	LTR87|LTR|ERVL?	-68638	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
78759	chr15	99104501	99105050	+	0	NA	promoter-TSS (NM_015286)	promoter-TSS (NM_015286)	-305	NM_015286	23336		NM_015286	ENSG00000182253	SYNM	DMN|SYN	synemin	protein-coding
10291	chr1	64847101	64847500	+	0	NA	intron (NM_001321857, intron 13 of 24)	intron (NM_001321857, intron 13 of 24)	102225	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
231403	chr9	130940721	130941400	+	0	NA	Intergenic	Intergenic	-1813	NM_032843	84929		NM_032843	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
102818	chr17	76455401	76455800	+	0	NA	intron (NM_001166579, intron 1 of 6)	intron (NM_001166579, intron 1 of 6)	2249	NM_001166579	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
44422	chr11	104165051	104165250	+	0	NA	Intergenic	Intergenic	-1003	NM_025208	80310		NM_025208	ENSG00000170962	PDGFD	IEGF|MSTP036|SCDGF-B|SCDGFB	platelet derived growth factor D	protein-coding
152064	chr22	19720951	19721630	+	0	NA	intron (NR_037612, intron 7 of 11)	CpG-18755	-2249	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
19186	chr1	172154601	172154980	+	0	NA	intron (NM_001350204, intron 15 of 20)	intron (NM_001350204, intron 15 of 20)	-9955	NR_103486	100628315		NR_038397		DNM3OS	DNM3-AS1|MIR199A2HG	DNM3 opposite strand/antisense RNA	ncRNA
26280	chr10	14873221	14873480	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-5433	NR_034181	79723		NM_024670	ENSG00000152455	SUV39H2	KMT1B	SUV39H2 histone lysine methyltransferase	protein-coding
15077	chr1	148462051	148463050	+	0	NA	Intergenic	MER31-int|LTR|ERV1	-2630	NR_027468	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
163796	chr3	52401771	52402430	+	0	NA	3' UTR (NM_004656, exon 17 of 17)	3' UTR (NM_004656, exon 17 of 17)	7908	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
8387	chr1	40383521	40384880	+	0	NA	intron (NM_001198978, intron 1 of 9)	intron (NM_001198978, intron 1 of 9)	-9145	NM_001198979	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
186191	chr5	134216151	134217150	+	0	NA	intron (NM_002715, intron 1 of 6)	intron (NM_002715, intron 1 of 6)	8904	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
141237	chr2	239625951	239626600	+	0	NA	Intergenic	Intergenic	-136585	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
191968	chr6	16148471	16148830	+	0	NA	TTS (NM_013262)	TTS (NM_013262)	7094	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
22325	chr1	214214001	214214400	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-66959	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
74746	chr15	63209821	63211330	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	20969	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
4702	chr1	23117451	23117830	+	0	NA	intron (NM_033631, intron 1 of 4)	intron (NM_033631, intron 1 of 4)	51216	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
122171	chr19	48898771	48899300	+	0	NA	promoter-TSS (NM_003323)	promoter-TSS (NM_003323)	-291	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
79353	chr16	610871	611330	+	0	NA	intron (NM_001172664, intron 2 of 6)	intron (NM_001172664, intron 2 of 6)	-19885	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
108172	chr18	62885771	62886330	+	0	NA	intron (NM_194449, intron 4 of 16)	intron (NM_194449, intron 4 of 16)	170509	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
75779	chr15	68791251	68792450	+	0	NA	intron (NM_006305, intron 1 of 6)	intron (NM_006305, intron 1 of 6)	10075	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
22473	chr1	221712051	221712800	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	24475	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
71771	chr15	21261851	21262150	+	0	NA	Intergenic	REP522|Satellite|telo	35829	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
119867	chr19	41446951	41447250	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	3944	NM_001130514	100170765		NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
149342	chr21	29071021	29071530	+	0	NA	intron (NM_006585, intron 1 of 14)	MER3|DNA|hAT-Charlie	2373	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
94000	chr17	22977471	22977630	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	454439	NM_001190452	100462977		NM_001190452		MTRNR2L1	HN1	MT-RNR2 like 1 (pseudogene)	pseudo
31120	chr10	89369321	89369800	+	0	NA	Intergenic	Intergenic	-8496	NM_001010987	439996		NM_001010987	ENSG00000204010	IFIT1B	IFIT1L|bA149I23.6	interferon induced protein with tetratricopeptide repeats 1B	protein-coding
216585	chr8	22021721	22023050	+	0	NA	Intergenic	L1MA4|LINE|L1	-1749	NM_001286680	10361		NM_182795	ENSG00000158806	NPM2	-	nucleophosmin/nucleoplasmin 2	protein-coding
178044	chr4	139619771	139619930	+	0	NA	Intergenic	L2c|LINE|L2	-45918	NM_001204367	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
193949	chr6	31673451	31673750	+	0	NA	Intergenic	Intergenic	2649	NM_021221	58496		NM_021221	ENSG00000240053	LY6G5B	C6orf19|G5b	lymphocyte antigen 6 family member G5B	protein-coding
176728	chr4	101332721	101333180	+	0	NA	intron (NM_001130692, intron 1 of 11)	L3|LINE|CR1	-2536	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
82545	chr16	18405601	18405800	+	0	NA	promoter-TSS (NR_049832).4	promoter-TSS (NR_049832).4	62	NR_037442	100500910		NR_037442	ENSG00000263918	MIR3670-1	MIR3670|hsa-mir-3670-1	microRNA 3670-1	ncRNA
209298	chr7	75992871	75993030	+	0	NA	intron (NR_156695, intron 1 of 10)	AluSx1|SINE|Alu	1645	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
49478	chr12	25200821	25201500	+	0	NA	intron (NM_001001660, intron 1 of 2)	intron (NM_001001660, intron 1 of 2)	5923	NM_001001660	144363		NM_001001660	ENSG00000205707	ETFRF1	LYRM5	electron transfer flavoprotein regulatory factor 1	protein-coding
17648	chr1	157163421	157164200	+	0	NA	Intergenic	Intergenic	-25219	NM_005240	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
95028	chr17	32483351	32484680	+	0	NA	TTS (NM_002815)	TTS (NM_002815)	-2978	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
32637	chr10	103692251	103694000	+	0	NA	intron (NM_014631, intron 5 of 13)	CpG-3340	-14910	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
71948	chr15	23048801	23049830	+	0	NA	Intergenic	Intergenic	-9642	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
43798	chr11	86431301	86431530	+	0	NA	Intergenic	CpG	56528	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
234842	chrX	24479151	24480900	+	0	NA	intron (NM_001142386, intron 1 of 11)	intron (NM_001142386, intron 1 of 11)	14739	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
46456	chr11	128194851	128195500	+	0	NA	Intergenic	Intergenic	-13591	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
38239	chr11	36467921	36468180	+	0	NA	Intergenic	Intergenic	42222	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
205181	chr7	7596251	7596550	+	0	NA	exon (NM_001370077, exon 9 of 11)	exon (NM_001370077, exon 9 of 11)	28374	NM_001370078	54468		NM_019005	ENSG00000164654	MIOS	MIO|Sea4|Yulink	meiosis regulator for oocyte development	protein-coding
47253	chr12	1204451	1205130	+	0	NA	intron (NR_027946, intron 12 of 18)	intron (NR_027946, intron 12 of 18)	177042	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
203821	chr7	1411601	1411800	+	0	NA	Intergenic	CpG	47770	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
106205	chr18	11638301	11638500	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	16541	NR_106975	102465690		NR_106975	ENSG00000283492	MIR7153	hsa-mir-7153|mir-7153	microRNA 7153	ncRNA
90900	chr17	2419071	2419230	+	0	NA	3' UTR (NM_024086, exon 10 of 10)	3' UTR (NM_024086, exon 10 of 10)	-3714	NR_028335	284009		NM_001025459		LOC284009	-	uncharacterized LOC284009	ncRNA
100342	chr17	59897751	59898050	+	0	NA	intron (NM_001272044, intron 2 of 15)	AluSx4|SINE|Alu	4779	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
147887	chr20	62866751	62867530	+	0	NA	Intergenic	AluSx|SINE|Alu	-5318	NM_001301726	10732		NM_006602	ENSG00000101190	TCFL5	CHA|E2BP-1|Figlb|SOSF1|bHLHe82	transcription factor like 5	protein-coding
154637	chr22	36325451	36325980	+	0	NA	intron (NM_002473, intron 5 of 40)	intron (NM_002473, intron 5 of 40)	-38808	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
42050	chr11	67456771	67456930	+	0	NA	intron (NM_145200, intron 3 of 5)	intron (NM_145200, intron 3 of 5)	1496	NM_001300895	57010		NM_145200	ENSG00000175544	CABP4	CRSD|CSNB2B	calcium binding protein 4	protein-coding
116813	chr19	18545601	18546050	+	0	NA	Intergenic	AluJb|SINE|Alu	-2252	NM_001308373	23770		NM_012181	ENSG00000105701	FKBP8	FKBP38|FKBPr38	FKBP prolyl isomerase 8	protein-coding
38988	chr11	47592401	47592980	+	0	NA	intron (NM_031909, intron 1 of 1)	intron (NM_031909, intron 1 of 1)	1721	NM_031909	114900		NM_031909	ENSG00000172247	C1QTNF4	CTRP4|ZACRP4	C1q and TNF related 4	protein-coding
156893	chr22	42179971	42181380	+	0	NA	intron (NM_005650, intron 2 of 5)	intron (NM_005650, intron 2 of 5)	-36121	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
30270	chr10	75161901	75162300	+	0	NA	intron (NM_144660, intron 2 of 4)	AluSx1|SINE|Alu	-48054	NM_001324087	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
57215	chr12	121508471	121508830	+	0	NA	intron (NM_001005366, intron 11 of 22)	MIRb|SINE|MIR	-64298	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
190276	chr5	179549921	179551780	+	0	NA	exon (NM_025158, exon 1 of 18)	exon (NM_025158, exon 1 of 18)	296	NM_025158	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
34809	chr11	280651	282150	+	0	NA	exon (NM_001276700, exon 4 of 8)	exon (NM_001276700, exon 4 of 8)	2830	NM_138329	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
220677	chr8	101200651	101201080	+	0	NA	intron (NM_001267709, intron 2 of 3)	intron (NM_001267709, intron 2 of 3)	4808	NM_016096	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
86731	chr16	67601021	67601580	+	0	NA	intron (NM_001191022, intron 2 of 9)	(GT)n|Simple_repeat|Simple_repeat	30527	NM_001363916	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
163592	chr3	51973371	51974500	+	0	NA	intron (NM_032750, intron 1 of 3)	CpG	695	NM_032750	84836		NM_032750	ENSG00000114779	ABHD14B	CIB|HEL-S-299	abhydrolase domain containing 14B	protein-coding
202058	chr6	154169451	154169750	+	0	NA	intron (NM_001130700, intron 10 of 11)	intron (NM_001130700, intron 10 of 11)	79838	NM_001285527	4988		NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor mu 1	protein-coding
107840	chr18	54265051	54265350	+	0	NA	Intergenic	AluJb|SINE|Alu	-4279	NR_147257	11201		NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
72171	chr15	29131771	29132330	+	0	NA	intron (NM_015307, intron 7 of 10)	intron (NM_015307, intron 7 of 10)	61392	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
74542	chr15	60512271	60512430	+	0	NA	intron (NM_134260, intron 5 of 11)	AluJo|SINE|Alu	33172	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
58799	chr12	132773071	132773430	+	0	NA	exon (NM_005895, exon 24 of 24)	exon (NM_005895, exon 24 of 24)	-11418	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
107375	chr18	46042651	46043250	+	0	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	29310	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
206445	chr7	32876871	32877280	+	0	NA	intron (NM_015483, intron 2 of 3)	AluSc8|SINE|Alu	14685	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
85002	chr16	31486421	31486680	+	0	NA	intron (NR_130783, intron 5 of 11)	intron (NR_130783, intron 5 of 11)	3427	NR_130783	6524		NM_003041	ENSG00000140675	SLC5A2	SGLT2	solute carrier family 5 member 2	protein-coding
126932	chr2	33277021	33277280	+	0	NA	intron (NM_001166265, intron 14 of 29)	intron (NM_001166265, intron 14 of 29)	-141366	NR_039628	100616136		NR_039628	ENSG00000283591	MIR4430	-	microRNA 4430	ncRNA
180550	chr5	14663671	14665500	+	0	NA	promoter-TSS (NM_138348)	promoter-TSS (NM_138348)	19	NR_168439	728178		NR_168439	ENSG00000261360	OTULIN-DT	-	OTULIN divergent transcript	ncRNA
5349	chr1	25290001	25290330	+	0	NA	intron (NM_001282867, intron 2 of 9)	MIRb|SINE|MIR	17656	NM_001282871	6007		NM_016124	ENSG00000187010	RHD	CD240D|DIIIc|HDFNRH|RH|RH30|RHCED|RHDVA(TT)|RHDel|RHPII|RHXIII|Rh4|RhDCw|RhII|RhK562-II|RhPI|SLC42A5	Rh blood group D antigen	protein-coding
74054	chr15	52526051	52526150	+	0	NA	intron (NM_001382348, intron 1 of 42)	intron (NM_001382348, intron 1 of 42)	2780	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
223543	chr8	144144771	144145130	+	0	NA	Intergenic	Intergenic	-3066	NM_032450	727957		NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat like repeat family member 1	protein-coding
238343	chrX	149547371	149547930	+	0	NA	TTS (NM_001323079)	TTS (NM_001323079)	2274	NM_001323079	101928917		NM_001323079	ENSG00000283697	HSFX3	-	heat shock transcription factor family, X-linked member 3	protein-coding
32720	chr10	104254251	104255230	+	0	NA	promoter-TSS (NM_001191002)	promoter-TSS (NM_001191002)	30	NM_001191002	9446		NM_004832	ENSG00000148834	GSTO1	GSTO 1-1|GSTTLp28|HEL-S-21|P28|SPG-R	glutathione S-transferase omega 1	protein-coding
112627	chr19	6770871	6771580	+	0	NA	Intergenic	AluSp|SINE|Alu	-1483	NM_001258207	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
53917	chr12	71662371	71663200	+	0	NA	intron (NM_144982, intron 1 of 34)	intron (NM_144982, intron 1 of 34)	1063	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
72878	chr15	40291221	40291480	+	0	NA	exon (NM_004573, exon 26 of 32)	exon (NM_004573, exon 26 of 32)	-8764	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
56173	chr12	111418571	111418730	+	0	NA	exon (NM_005475, exon 2 of 8)	exon (NM_005475, exon 2 of 8)	12727	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
165206	chr3	72822251	72822650	+	0	NA	intron (NM_018130, intron 6 of 10)	intron (NM_018130, intron 6 of 10)	25995	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
101344	chr17	66964501	66964800	+	0	NA	promoter-TSS (NM_014405)	promoter-TSS (NM_014405)	-57	NM_014405	27092		NM_014405	ENSG00000075461	CACNG4	-	calcium voltage-gated channel auxiliary subunit gamma 4	protein-coding
109939	chr19	1325021	1326100	+	0	NA	Intergenic	Intergenic	-29399	NM_001369789	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
238227	chrX	140713851	140713950	+	0	NA	non-coding (NR_028344, exon 3 of 3)	non-coding (NR_028344, exon 3 of 3)	4141	NR_104228	286411		NR_028344	ENSG00000203930	LINC00632	ARST|ASINC|BMOR|CDR1-AS|CDR1NAT|CDR1as|MDHDH|ciRS-7	long intergenic non-protein coding RNA 632	ncRNA
108229	chr18	63198151	63198300	+	0	NA	intron (NM_000633, intron 2 of 2)	(AC)n|Simple_repeat|Simple_repeat	121544	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
5977	chr1	26931871	26932030	+	0	NA	intron (NM_006600, intron 2 of 8)	AluSx|SINE|Alu	10207	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
210121	chr7	98166001	98166400	+	0	NA	intron (NM_014916, intron 6 of 13)	intron (NM_014916, intron 6 of 13)	-45239	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
226039	chr9	42974851	42974950	+	0	NA	Intergenic	CpG	-151266	NR_160669	102724904		NR_160669	ENSG00000291167	LOC102724904	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
143167	chr20	24131801	24132200	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-67767	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
178407	chr4	147689351	147689450	+	0	NA	Intergenic	Intergenic	-5170	NM_001350142	90826		NM_138364	ENSG00000164169	PRMT9	PRMT10	protein arginine methyltransferase 9	protein-coding
96960	chr17	42195771	42196330	+	0	NA	Intergenic	MER67C|LTR|ERV1	-1556	NM_032484	84514		NM_032484	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
137158	chr2	191089071	191089430	+	0	NA	intron (NM_003151, intron 3 of 23)	L1MC2|LINE|L1	61744	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
166133	chr3	111454671	111454830	+	0	NA	Intergenic	Intergenic	-87447	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
131570	chr2	96817971	96818150	+	0	NA	intron (NM_199078, intron 1 of 6)	intron (NM_199078, intron 1 of 6)	1792	NM_017623	26505		NM_017623	ENSG00000168763	CNNM3	ACDP3	cyclin and CBS domain divalent metal cation transport mediator 3	protein-coding
87539	chr16	71908401	71908600	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluSg|SINE|Alu	12969	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
201023	chr6	141485671	141485830	+	0	NA	Intergenic	LTR33B|LTR|ERVL	-647409	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
216359	chr8	17576701	17577900	+	0	NA	promoter-TSS (NM_001372073)	promoter-TSS (NM_001372073)	84	NM_001372073	5157		NM_006207	ENSG00000104213	PDGFRL	PDGRL|PRLTS	platelet derived growth factor receptor like	protein-coding
3775	chr1	16692621	16693200	+	0	NA	intron (NR_026567, intron 10 of 10)	CpG	11655	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
138024	chr2	201281151	201281250	+	0	NA	intron (NR_111983, intron 7 of 8)	AluSz6|SINE|Alu	20664	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
230173	chr9	127781921	127782200	+	0	NA	Intergenic	Intergenic	-3394	NM_170600	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
179066	chr4	165873421	165873830	+	0	NA	5' UTR (NM_012464, exon 1 of 21)	5' UTR (NM_012464, exon 1 of 21)	388	NM_012464	7092		NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding
136748	chr2	181304051	181304830	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	1212	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
87768	chr16	75268551	75269180	+	0	NA	promoter-TSS (NM_001170715).2	promoter-TSS (NM_001170715).2	-858	NM_001170715	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
209032	chr7	74566721	74567050	+	0	NA	intron (NM_001199207, intron 22 of 26)	intron (NM_001199207, intron 22 of 26)	-29083	NR_162116	113218504		NR_162116		MIR10525	-	microRNA 10525	ncRNA
70954	chr14	104681071	104681230	+	0	NA	Intergenic	Intergenic	-3401	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	mir-4710	microRNA 4710	ncRNA
54102	chr12	76117401	76117600	+	0	NA	Intergenic	L1ME4a|LINE|L1	-32815	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
96995	chr17	42282271	42282680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5072	NM_003152	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
63846	chr14	21522751	21523350	+	0	NA	exon (NM_001364564, exon 2 of 2)	exon (NM_001364564, exon 2 of 2)	3296	NR_111967	6297		NM_005407	ENSG00000165821	SALL2	COLB|HSAL2|Sal-2|ZNF795|p150(Sal2)	spalt like transcription factor 2	protein-coding
222695	chr8	141286871	141287580	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	21063	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
43433	chr11	77636021	77636280	+	0	NA	intron (NM_001311199, intron 1 of 6)	AluJb|SINE|Alu	1644	NM_001311200	1207		NM_001293	ENSG00000074201	CLNS1A	CLCI|CLNS1B|ICln	chloride nucleotide-sensitive channel 1A	protein-coding
140939	chr2	237737971	237738330	+	0	NA	intron (NM_001137550, intron 10 of 23)	intron (NM_001137550, intron 10 of 23)	45945	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
199803	chr6	127302651	127303150	+	0	NA	intron (NM_001139510, intron 5 of 5)	intron (NM_001139510, intron 5 of 5)	36036	NM_001242850	81847		NM_030963	ENSG00000118518	RNF146	-	ring finger protein 146	protein-coding
155997	chr22	39926271	39926930	+	0	NA	promoter-TSS (NM_001291826)	promoter-TSS (NM_001291826)	-4	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
115917	chr19	16613771	16614130	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	14254	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
171431	chr3	196271771	196272800	+	0	NA	intron (NM_001312673, intron 1 of 8)	AluSx3|SINE|Alu	15441	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
139278	chr2	219494151	219494780	+	0	NA	TTS (NM_005876)	TTS (NM_005876)	-1890	NM_001286811	100996693		NM_001286811	ENSG00000286095	SPEGNB	-	SPEG neighbor	protein-coding
131327	chr2	96134001	96134700	+	0	NA	intron (NM_001002036, intron 3 of 8)	intron (NM_001002036, intron 3 of 8)	4086	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
40365	chr11	63984751	63984850	+	0	NA	Intergenic	AluY|SINE|Alu	-1053	NR_003089	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
216053	chr8	10051251	10051550	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-2892	NM_001135670	4482		NM_012331	ENSG00000175806	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
201329	chr6	144415901	144416300	+	0	NA	intron (NM_007124, intron 2 of 73)	intron (NM_007124, intron 2 of 73)	10445	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
16502	chr1	154867921	154868280	+	0	NA	promoter-TSS (NM_001365837)	promoter-TSS (NM_001365837)	-30	NM_001365838	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
109751	chr19	1113251	1113980	+	0	NA	exon (NM_014963, exon 19 of 32)	exon (NM_014963, exon 19 of 32)	8965	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
23946	chr1	235122971	235123480	+	0	NA	intron (NM_014765, intron 1 of 4)	AluSg|SINE|Alu	4712	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
61443	chr13	51938901	51939100	+	0	NA	intron (NM_001330579, intron 15 of 18)	intron (NM_001330579, intron 15 of 18)	72450	NM_000053	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
127091	chr2	37601001	37601280	+	0	NA	Intergenic	HAL1b|LINE|L1	70502	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
131243	chr2	95991021	95993250	+	0	NA	promoter-TSS (NM_001310154)	promoter-TSS (NM_001310154)	-311	NM_001310154	400986		NM_001010914	ENSG00000174501	ANKRD36C	-	ankyrin repeat domain 36C	protein-coding
226333	chr9	69178371	69178730	+	0	NA	intron (NM_004817, intron 1 of 22)	intron (NM_004817, intron 1 of 22)	4273	NM_004817	9414		NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|FHCA1|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
71537	chr14	106211571	106211730	+	0	NA	Intergenic	Intergenic	-76024	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
179098	chr4	168482021	168482280	+	0	NA	Intergenic	Intergenic	-1636	NM_001012967	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
98632	chr17	47807171	47807700	+	0	NA	TTS (NM_145798)	TTS (NM_145798)	14359	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
41836	chr11	67102671	67103030	+	0	NA	Intergenic	Intergenic	15498	NR_160735	107984341		NR_160735		LOC107984341	-	uncharacterized LOC107984341	ncRNA
147702	chr20	62351621	62351880	+	0	NA	exon (NM_005560, exon 6 of 80)	exon (NM_005560, exon 6 of 80)	-1260	NR_109923	101928158		NR_109922	ENSG00000228812	LAMA5-AS1	-	LAMA5 antisense RNA 1	ncRNA
208244	chr7	65506171	65506530	+	0	NA	intron (NR_157837, intron 4 of 4)	MER103C|DNA|hAT-Charlie	48715	NR_157837	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
40390	chr11	64007071	64007250	+	0	NA	intron (NM_014067, intron 4 of 10)	intron (NM_014067, intron 4 of 10)	21307	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
138942	chr2	218248571	218249230	+	0	NA	intron (NM_152862, intron 8 of 10)	intron (NM_152862, intron 8 of 10)	-10596	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
88685	chr16	85752421	85752680	+	0	NA	Intergenic	Intergenic	-1454	NR_161453	404550		NM_206967	ENSG00000154102	C16orf74	-	chromosome 16 open reading frame 74	protein-coding
142935	chr20	18590051	18590850	+	0	NA	intron (NM_080820, intron 1 of 5)	L1MC5a|LINE|L1	2396	NM_080820	92675		NM_080820	ENSG00000125821	DTD1	C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68	D-aminoacyl-tRNA deacylase 1	protein-coding
11068	chr1	85179551	85180250	+	0	NA	intron (NM_032184, intron 3 of 6)	X7B_LINE|LINE|CR1	21116	NM_032184	84144		NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
4933	chr1	23916401	23917130	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-3403	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
10766	chr1	77266951	77267250	+	0	NA	Intergenic	L2a|LINE|L2	-14919	NM_174858	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
153813	chr22	29720821	29721450	+	0	NA	intron (NM_182527, intron 1 of 4)	CpG	1132	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
220699	chr8	101636871	101637030	+	0	NA	intron (NM_024915, intron 12 of 15)	intron (NM_024915, intron 12 of 15)	144511	NM_001330593	79977		NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|PPCD4|TFCP2L3	grainyhead like transcription factor 2	protein-coding
113893	chr19	10680501	10680750	+	0	NA	intron (NM_153464, intron 9 of 17)	intron (NM_153464, intron 9 of 17)	-20814	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
166716	chr3	121431671	121432500	+	0	NA	3' UTR (NM_199420, exon 30 of 30)	3' UTR (NM_199420, exon 30 of 30)	113903	NM_199420	10721		NM_006596	ENSG00000051341	POLQ	PRO0327	DNA polymerase theta	protein-coding
14573	chr1	145161121	145161930	+	0	NA	Intergenic	Intergenic	6082	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
93942	chr17	21318701	21319100	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	30864	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
183111	chr5	74640201	74641510	+	0	NA	non-coding (NR_046318, exon 1 of 2)	non-coding (NR_046318, exon 1 of 2)	569	NM_001256574	8507		NM_003633	ENSG00000171617	ENC1	CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10	ectodermal-neural cortex 1	protein-coding
3246	chr1	13805801	13806200	+	0	NA	intron (NM_012231, intron 8 of 9)	L2b|LINE|L2	56585	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
140751	chr2	234487471	234487630	+	0	NA	Intergenic	Intergenic	9499	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
173376	chr4	7915551	7915850	+	0	NA	intron (NM_001371091, intron 1 of 17)	MIRb|SINE|MIR	-23301	NM_203423	389199		NM_203423	ENSG00000228919	LOC389199	-	uncharacterized LOC389199	ncRNA
89070	chr16	88460251	88460500	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	7095	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
175100	chr4	54229771	54230200	+	0	NA	intron (NM_006206, intron 1 of 22)	CpG	692	NM_006206	5156		NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
238192	chrX	136925071	136925470	+	0	NA	Intergenic	Intergenic	-44490	NR_028476	27316		NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|MRXSG|MRXSH|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein X-linked	protein-coding
28636	chr10	59647721	59647800	+	0	NA	Intergenic	Intergenic	62131	NM_001323979	220963		NM_194298	ENSG00000165449	SLC16A9	C10orf36|MCT9	solute carrier family 16 member 9	protein-coding
59393	chr13	25005071	25005630	+	0	NA	Intergenic	Intergenic	-36881	NR_026730	646405		NM_001126062		TPTE2P1	-	TPTE2 pseudogene 1	pseudo
53725	chr12	68625821	68626380	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	1275	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
128738	chr2	61887821	61890180	+	0	NA	promoter-TSS (NM_001256721)	promoter-TSS (NM_001256721)	300	NM_001321782	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
6067	chr1	27146751	27147250	+	0	NA	intron (NM_003047, intron 1 of 11)	AluSx1|SINE|Alu	8125	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
164414	chr3	58568671	58569080	+	0	NA	intron (NM_001076778, intron 2 of 3)	intron (NM_001076778, intron 2 of 3)	8516	NM_001076778	11170		NM_007177	ENSG00000168309	FAM107A	DRR1|TU3A	family with sequence similarity 107 member A	protein-coding
150750	chr21	43774521	43774930	+	0	NA	exon (NM_000100, exon 2 of 3)	exon (NM_000100, exon 2 of 3)	1583	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
7723	chr1	36110321	36110580	+	0	NA	intron (NM_001294347, intron 2 of 3)	intron (NM_001294347, intron 2 of 3)	14772	NM_005202	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
108047	chr18	59268921	59269400	+	0	NA	exon (NM_013435, exon 3 of 3)	exon (NM_013435, exon 3 of 3)	4294	NM_013435	30062		NM_013435	ENSG00000134438	RAX	MCOP3|MCOPS16|RAX1|RX	retina and anterior neural fold homeobox	protein-coding
82458	chr16	16593421	16593680	+	0	NA	Intergenic	Intergenic	214305	NM_001282507	101059938		NM_001282507	ENSG00000214967	NPIPA7	NPIPA8	nuclear pore complex interacting protein family member A7	protein-coding
223270	chr8	143719821	143720430	+	0	NA	intron (NM_139021, intron 7 of 13)	intron (NM_139021, intron 7 of 13)	3776	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
238049	chrX	135424121	135424580	+	0	NA	3' UTR (NM_203306, exon 2 of 2)	3' UTR (NM_203306, exon 2 of 2)	2406	NM_203306	399668		NM_203306	ENSG00000178947	SMIM10L2A	LED|LINC00086|LINC00087|LINC0086|NCRNA00086|NCRNA00087|SMIM10L2B	small integral membrane protein 10 like 2A	protein-coding
190138	chr5	178093271	178093630	+	0	NA	Intergenic	L1MEg|LINE|L1	-20082	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
106182	chr18	10527871	10528030	+	0	NA	intron (NM_003826, intron 1 of 11)	AluSz|SINE|Alu	1923	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
229566	chr9	123225321	123225680	+	0	NA	intron (NM_001376107, intron 1 of 19)	MLT1N2|LTR|ERVL-MaLR	43086	NR_033234	55342		NM_018387	ENSG00000165209	STRBP	HEL162|ILF3L|SPNR|p74	spermatid perinuclear RNA binding protein	protein-coding
221290	chr8	122921771	122921950	+	0	NA	intron (NM_001362797, intron 3 of 4)	MER113|DNA|hAT-Charlie	103912	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
114144	chr19	11292071	11292230	+	0	NA	Intergenic	Intergenic	-4010	NM_012466	26526		NM_012466	ENSG00000130167	TSPAN16	TM-8|TM4-B|TM4SF16	tetraspanin 16	protein-coding
64559	chr14	24630251	24630950	+	0	NA	TTS (NM_004131)	TTS (NM_004131)	3590	NM_004131	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
168940	chr3	152365121	152365580	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-24360	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
97983	chr17	45265401	45266380	+	0	NA	intron (NM_003954, intron 14 of 15)	intron (NM_003954, intron 14 of 15)	-3796	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
158257	chr22	50312821	50313080	+	0	NA	intron (NM_001001794, intron 17 of 19)	intron (NM_001001794, intron 17 of 19)	-5304	NM_001376869	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
176539	chr4	98259821	98262530	+	0	NA	promoter-TSS (NM_001100429)	promoter-TSS (NM_001100429)	-209	NM_001100429	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
129189	chr2	68189651	68189850	+	0	NA	intron (NM_000945, intron 2 of 5)	AluSz|SINE|Alu	31862	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
185942	chr5	132955101	132955300	+	0	NA	intron (NM_014423, intron 1 of 20)	LTR1F2|LTR|ERV1	8434	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
21919	chr1	207837121	207837380	+	0	NA	Intergenic	Intergenic	-14547	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
144759	chr20	36612621	36613600	+	0	NA	TTS (NM_018840)	TTS (NM_018840)	7331	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
218575	chr8	55776121	55776600	+	0	NA	intron (NM_001363184, intron 1 of 11)	AluY|SINE|Alu	2914	NM_024831	96764		NM_024831	ENSG00000137574	TGS1	NCOA6IP|PIMT|PIPMT	trimethylguanosine synthase 1	protein-coding
25911	chr10	11302421	11302880	+	0	NA	intron (NM_001326330, intron 9 of 12)	intron (NM_001326330, intron 9 of 12)	42024	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
171396	chr3	196188551	196188850	+	0	NA	Intergenic	AluSx|SINE|Alu	22700	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
37006	chr11	11997021	11997680	+	0	NA	intron (NM_001018057, intron 3 of 6)	intron (NM_001018057, intron 3 of 6)	11289	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
117456	chr19	19686451	19686650	+	0	NA	Intergenic	L1MB2|LINE|L1	17711	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
82810	chr16	21476271	21476630	+	0	NA	intron (NR_027155, intron 6 of 28)	intron (NR_027155, intron 6 of 28)	-25076	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
736	chr1	1471051	1472680	+	0	NA	promoter-TSS (NM_031921)	promoter-TSS (NM_031921)	100	NM_031921	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
90402	chr17	1300051	1301150	+	0	NA	3' UTR (NM_172367, exon 3 of 3)	3' UTR (NM_172367, exon 3 of 3)	20938	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
51291	chr12	51241021	51241350	+	0	NA	intron (NM_001136269, intron 3 of 3)	intron (NM_001136269, intron 3 of 3)	2359	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
55299	chr12	103494121	103494580	+	0	NA	intron (NR_103526, intron 1 of 10)	intron (NR_103526, intron 1 of 10)	1618	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
143239	chr20	24996121	24996380	+	0	NA	Intergenic	Intergenic	-3499	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
111873	chr19	4649421	4649900	+	0	NA	intron (NM_001167942, intron 1 of 1)	MIRb|SINE|MIR	9643	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
142502	chr20	4760401	4761300	+	0	NA	Intergenic	CpG	-20182	NR_024268	149830		NM_177549	ENSG00000180259	PRNT	M8	prion locus lncRNA, testis expressed	ncRNA
77694	chr15	85650301	85650830	+	0	NA	intron (NM_007200, intron 10 of 36)	AluSx1|SINE|Alu	30615	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
11994	chr1	94926851	94927780	+	0	NA	promoter-TSS (NR_033998)	promoter-TSS (NR_033998)	-92	NM_001286055	1266		NM_001839	ENSG00000117519	CNN3	-	calponin 3	protein-coding
32838	chr10	110031651	110032230	+	0	NA	intron (NM_016824, intron 1 of 14)	L1MA8|LINE|L1	-23559	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
33358	chr10	117174621	117175350	+	0	NA	Intergenic	Intergenic	-5930	NR_121650	101927704		NR_121650	ENSG00000234474	MIR3663HG	-	MIR3663 host gene	ncRNA
56008	chr12	110314071	110314230	+	0	NA	intron (NM_170665, intron 5 of 19)	AluSp|SINE|Alu	32903	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
119848	chr19	41400001	41400250	+	0	NA	intron (NM_001164783, intron 1 of 8)	AluJr|SINE|Alu	2307	NM_000709	593		NM_000709	ENSG00000248098	BCKDHA	BCKDE1A|MSU|MSUD1|MSUD1A|OVD1A	branched chain keto acid dehydrogenase E1 subunit alpha	protein-coding
17847	chr1	159918901	159919200	+	0	NA	intron (NM_001277223, intron 4 of 4)	MIRc|SINE|MIR	4684	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
86120	chr16	57669621	57670280	+	0	NA	intron (NM_170776, intron 1 of 11)	LTR33|LTR|ERVL	1644	NM_001308360	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
131821	chr2	98632251	98632550	+	0	NA	intron (NM_001160154, intron 11 of 12)	L1M4b|LINE|L1	23811	NM_001330353	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
126164	chr2	26350171	26350730	+	0	NA	intron (NR_137633, intron 1 of 9)	AluJo|SINE|Alu	-3661	NM_153835	165082		NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding
224691	chr9	21332951	21333780	+	0	NA	exon (NM_018847, exon 1 of 1)	exon (NM_018847, exon 1 of 1)	2039	NM_018847	55958		NM_018847	ENSG00000198642	KLHL9	-	kelch like family member 9	protein-coding
195165	chr6	35786671	35787030	+	0	NA	intron (NM_001348773, intron 1 of 2)	intron (NM_001348773, intron 1 of 2)	5831	NM_001010886	340204		NM_001010886	ENSG00000204140	CLPSL1	C6orf127|ESP32|dJ510O8.6	colipase like 1	protein-coding
198322	chr6	101011221	101011680	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-130078	NM_022091	10973		NM_006828	ENSG00000112249	ASCC3	ASC1p200|HELIC1|MRT81|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
169219	chr3	157105221	157105680	+	0	NA	intron (NR_034007, intron 1 of 3)	intron (NR_034007, intron 1 of 3)	15569	NR_034008	100498859		NR_034008		LINC00881	LIPTER	long intergenic non-protein coding RNA 881	ncRNA
52166	chr12	54292201	54292400	+	0	NA	3' UTR (NM_001136023, exon 3 of 3)	3' UTR (NM_001136023, exon 3 of 3)	3479	NM_006163	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
8336	chr1	40177171	40177580	+	0	NA	intron (NM_012421, intron 1 of 7)	AluY|SINE|Alu	15988	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
98415	chr17	46628671	46629700	+	0	NA	intron (NR_040116, intron 3 of 19).2	intron (NR_040116, intron 3 of 19).2	38451	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
168696	chr3	150619201	150619600	+	0	NA	intron (NM_016275, intron 1 of 5)	AluSg4|SINE|Alu	16079	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
51562	chr12	52575971	52576330	+	0	NA	Intergenic	Intergenic	-2307	NM_175053	121391		NM_175053	ENSG00000170484	KRT74	ADWH|ECTD7|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4	keratin 74	protein-coding
218462	chr8	48799351	48799450	+	0	NA	Intergenic	L1PA2|LINE|L1	-64089	NM_001142857	79645		NM_024593	ENSG00000034239	CLXN	CILD53|EFCAB1|ODAD5	calaxin	protein-coding
173043	chr4	4943751	4944350	+	0	NA	intron (NR_125893, intron 2 of 2)	intron (NR_125893, intron 2 of 2)	23242	NR_125893	101928306		NR_125893		LOC101928306	-	uncharacterized LOC101928306	ncRNA
191947	chr6	16124401	16124800	+	0	NA	Intergenic	Intergenic	-4486	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
214994	chr7	152319421	152319680	+	0	NA	intron (NM_170606, intron 3 of 58)	LTR13|LTR|ERVK	116453	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
20406	chr1	198186621	198187080	+	0	NA	intron (NM_133494, intron 1 of 9)	HERVL40-int|LTR|ERVL	29852	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
32131	chr10	101237051	101237150	+	0	NA	intron (NR_029380, intron 2 of 2)	intron (NR_029380, intron 2 of 2)	7506	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
24681	chr1	247169571	247170350	+	0	NA	intron (NM_003431, intron 1 of 3)	intron (NM_003431, intron 1 of 3)	2057	NM_001297567	7678		NM_003431	ENSG00000196418	ZNF124	HZF-16|HZF16|ZK7	zinc finger protein 124	protein-coding
20355	chr1	197912401	197912700	+	0	NA	promoter-TSS (NM_001014434)	promoter-TSS (NM_001014434)	45	NM_001014434	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
33196	chr10	113688071	113688550	+	0	NA	intron (NM_001227, intron 1 of 6)	L1PBb|LINE|L1	8398	NM_033339	840		NM_001227	ENSG00000165806	CASP7	CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3	caspase 7	protein-coding
3727	chr1	16625971	16626500	+	0	NA	intron (NR_026752, intron 4 of 6)	(GACA)n|Simple_repeat|Simple_repeat	4671	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
238076	chrX	136150071	136150230	+	0	NA	intron (NM_001159700, intron 1 of 6)	intron (NM_001159700, intron 1 of 6)	1591	NM_001159700	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
146070	chr20	47501071	47502500	+	0	NA	promoter-TSS (NM_001174087)	promoter-TSS (NM_001174087)	-102	NM_181659	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
105154	chr17	82252701	82253280	+	0	NA	intron (NR_110578, intron 3 of 8)	intron (NR_110578, intron 3 of 8)	16322	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
234432	chrX	16843421	16843880	+	0	NA	TTS (NM_001198719)	TTS (NM_001198719)	26213	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
144931	chr20	37007751	37008850	+	0	NA	intron (NM_183404, intron 19 of 20)	intron (NM_183404, intron 19 of 20)	-56592	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
9790	chr1	53581101	53581300	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	121801	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
168668	chr3	150544551	150544650	+	0	NA	intron (NM_014445, intron 2 of 2)	intron (NM_014445, intron 2 of 2)	1896	NM_014445	27230		NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding
44920	chr11	115501371	115501530	+	0	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	2965	NM_001301045	23705		NM_014333	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
161465	chr3	42220401	42220800	+	0	NA	intron (NM_001349247, intron 16 of 16)	intron (NM_001349247, intron 16 of 16)	43347	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
53652	chr12	68334451	68334550	+	0	NA	Intergenic	Intergenic	-2086	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
154930	chr22	37213501	37213900	+	0	NA	Intergenic	Intergenic	-1223	NM_001051	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
89463	chr16	89051171	89051530	+	0	NA	Intergenic	Intergenic	-42502	NR_147928	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
214129	chr7	144285521	144285980	+	0	NA	non-coding (NR_033942, exon 1 of 13)	non-coding (NR_033942, exon 1 of 13)	253	NR_033942	728377		NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor 34, pseudogene	pseudo
18441	chr1	161522771	161522930	+	0	NA	Intergenic	Intergenic	-1690	NM_002155	3310		NM_002155	ENSG00000173110	HSPA6	HSP70B'	heat shock protein family A (Hsp70) member 6	protein-coding
173349	chr4	7798101	7798480	+	0	NA	intron (NM_001371091, intron 11 of 17)	intron (NM_001371091, intron 11 of 17)	44200	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
59023	chr13	20219701	20219900	+	0	NA	Intergenic	Intergenic	11433	NM_006783	10804		NM_006783	ENSG00000121742	GJB6	CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2	gap junction protein beta 6	protein-coding
220970	chr8	115222451	115223280	+	0	NA	Intergenic	L2|LINE|L2	445148	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
156071	chr22	40024551	40025080	+	0	NA	intron (NM_138435, intron 4 of 4)	intron (NM_138435, intron 4 of 4)	19715	NR_163486	114841040		NR_163486	ENSG00000261202	TNRC6B-DT	-	TNRC6B divergent transcript	ncRNA
163747	chr3	52356251	52356550	+	0	NA	intron (NM_015512, intron 21 of 77)	intron (NM_015512, intron 21 of 77)	40081	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
120018	chr19	41941951	41942550	+	0	NA	Intergenic	AluY|SINE|Alu	13430	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
128390	chr2	55047601	55048400	+	0	NA	promoter-TSS (NM_001321863)	promoter-TSS (NM_001321863)	666	NM_001321862	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133590	chr2	121698421	121698680	+	0	NA	intron (NR_037857, intron 2 of 3)	L1MB3|LINE|L1	38325	NM_032390	84365		NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
229598	chr9	123406151	123406250	+	0	NA	intron (NR_148208, intron 19 of 20)	intron (NR_148208, intron 19 of 20)	-3597	NR_030332	693186		NR_030332	ENSG00000207991	MIR601	MIRN601|hsa-mir-601	microRNA 601	ncRNA
103403	chr17	78177571	78177730	+	0	NA	intron (NM_001363848, intron 4 of 5)	AluY|SINE|Alu	9069	NM_004710	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
45908	chr11	120511951	120512500	+	0	NA	intron (NM_014619, intron 1 of 20)	CpG	477	NM_014619	2900		NM_014619	ENSG00000149403	GRIK4	EAA1|GRIK|GluK4|GluK4-2|KA1	glutamate ionotropic receptor kainate type subunit 4	protein-coding
79018	chr16	55251	55800	+	0	NA	exon (NM_024571, exon 2 of 5)	exon (NM_024571, exon 2 of 5)	1697	NM_024571	79622		NM_024571	ENSG00000161981	SNRNP25	C16orf33	small nuclear ribonucleoprotein U11/U12 subunit 25	protein-coding
91698	chr17	6435751	6436550	+	0	NA	Intergenic	Intergenic	-1029	NM_001285399	23746		NM_014336	ENSG00000129221	AIPL1	AIPL2|LCA4	aryl hydrocarbon receptor interacting protein like 1	protein-coding
65811	chr14	54854301	54854500	+	0	NA	intron (NM_001024024, intron 3 of 6)	intron (NM_001024024, intron 3 of 6)	23793	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
61819	chr13	75755901	75756300	+	0	NA	intron (NM_001306080, intron 3 of 30)	MLT1F-int|LTR|ERVL-MaLR	-4220	NM_001366633	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
185024	chr5	115543501	115545530	+	0	NA	intron (NM_020177, intron 1 of 2)	CpG	260	NM_020177	56929		NM_020177	ENSG00000145780	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog C	protein-coding
230720	chr9	128809721	128810100	+	0	NA	3' UTR (NM_001286772, exon 10 of 10)	3' UTR (NM_001286772, exon 10 of 10)	-8590	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
29310	chr10	69333451	69333750	+	0	NA	intron (NM_000188, intron 1 of 17)	intron (NM_000188, intron 1 of 17)	14753	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
40020	chr11	62668171	62668700	+	0	NA	TTS (NM_001043229)	TTS (NM_001043229)	3013	NR_004390	692158		NR_004390	ENSG00000206597	SNORA57	U99	small nucleolar RNA, H/ACA box 57	snoRNA
68546	chr14	89336371	89336630	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	80733	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
5925	chr1	26854351	26854650	+	0	NA	3' UTR (NM_032283, exon 8 of 8)	3' UTR (NM_032283, exon 8 of 8)	-8649	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
65118	chr14	44911821	44912880	+	0	NA	promoter-TSS (NR_110050)	promoter-TSS (NR_110050)	-433	NR_110050	101927418		NR_110050	ENSG00000258949	LOC101927418	-	uncharacterized LOC101927418	ncRNA
84227	chr16	29973081	29974360	+	0	NA	promoter-TSS (NM_001252043)	promoter-TSS (NM_001252043)	-148	NM_004783	9344		NM_004783	ENSG00000149930	TAOK2	MAP3K17|PSK|PSK1|PSK1-BETA|TAO1|TAO2|Tao2beta	TAO kinase 2	protein-coding
195504	chr6	37181451	37181950	+	0	NA	Intergenic	AluJb|SINE|Alu	11548	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
150882	chr21	44131451	44132080	+	0	NA	TTS (NM_001368238).2	TTS (NM_001368238).2	-1918	NR_135220	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
171368	chr3	196078271	196078430	+	0	NA	intron (NM_001313966, intron 1 of 16)	intron (NM_001313966, intron 1 of 16)	3740	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
31577	chr10	97336101	97336500	+	0	NA	Intergenic	L1ME4c|LINE|L1	-1571	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
126505	chr2	28412201	28412730	+	0	NA	3' UTR (NM_005253, exon 4 of 4)	3' UTR (NM_005253, exon 4 of 4)	-17793	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
161572	chr3	42831251	42831780	+	0	NA	intron (NM_001296, intron 2 of 2)	intron (NM_001296, intron 2 of 2)	22070	NM_001296	1238		NM_001296	ENSG00000144648	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
107918	chr18	57618571	57619130	+	0	NA	intron (NM_004539, intron 2 of 13)	AluJo|SINE|Alu	2986	NM_004539	4677		NM_004539	ENSG00000134440	NARS1	ASNRS|NARS|NEDMILEG|NEDMILG	asparaginyl-tRNA synthetase 1	protein-coding
183105	chr5	74633901	74634400	+	0	NA	intron (NR_046318, intron 1 of 1)	AluY|SINE|Alu	-5873	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
185846	chr5	132481011	132482570	+	0	NA	non-coding (NR_149068, exon 8 of 8)	non-coding (NR_149068, exon 8 of 8)	8983	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
10781	chr1	77430971	77431980	+	0	NA	intron (NM_174858, intron 8 of 13)	intron (NM_174858, intron 8 of 13)	148388	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
153663	chr22	28855671	28856180	+	0	NA	Intergenic	Intergenic	-27647	NM_001206998	84133		NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
140828	chr2	236554801	236555250	+	0	NA	Intergenic	L3|LINE|CR1	-14800	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
195289	chr6	36526121	36526380	+	0	NA	intron (NM_007271, intron 2 of 13)	intron (NM_007271, intron 2 of 13)	21229	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
207070	chr7	39950901	39952100	+	0	NA	exon (NM_031267, exon 1 of 14)	exon (NM_031267, exon 1 of 14)	1140	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
117571	chr19	21358471	21359800	+	0	NA	5' UTR (NM_001355239, exon 1 of 5)	5' UTR (NM_001355239, exon 1 of 5)	135	NM_001355237	148203		NM_001355237	ENSG00000172687	ZNF738	-	zinc finger protein 738	protein-coding
14092	chr1	120891251	120892330	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	2044	NM_001143883	653505		NM_001143883	ENSG00000263353	PPIAL4A	COAS-2|COAS2|PPIAL4|PPIAL4B	peptidylprolyl isomerase A like 4A	protein-coding
46275	chr11	124841801	124842180	+	0	NA	Intergenic	Intergenic	-23442	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
137523	chr2	197198601	197200800	+	0	NA	TTS (NR_135584)	TTS (NR_135584)	1709	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
104124	chr17	80353001	80353200	+	0	NA	non-coding (NR_029376, exon 2 of 2)	non-coding (NR_029376, exon 2 of 2)	-62067	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
58547	chr12	132245321	132245780	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-29841	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
47326	chr12	1798071	1798230	+	0	NA	intron (NM_172364, intron 34 of 37)	intron (NM_172364, intron 34 of 37)	-22117	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
17725	chr1	158935871	158936230	+	0	NA	intron (NM_152501, intron 1 of 8)	intron (NM_152501, intron 1 of 8)	4498	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
73005	chr15	40696771	40697130	+	0	NA	intron (NM_133487, intron 1 of 9)	L1ME3A|LINE|L1	1776	NM_002875	5888		NM_002875	ENSG00000051180	RAD51	BRCC5|FANCR|HRAD51|HsRad51|HsT16930|MRMV2|RAD51A|RECA	RAD51 recombinase	protein-coding
165333	chr3	88033801	88034000	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	25096	NM_003663	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
91404	chr17	4695321	4695580	+	0	NA	intron (NM_001278241, intron 1 of 18)	AluJr|SINE|Alu	8687	NM_001278241	27043		NM_014389	ENSG00000141456	PELP1	MNAR|P160	proline, glutamate and leucine rich protein 1	protein-coding
22602	chr1	223244501	223245100	+	0	NA	intron (NM_001037175, intron 5 of 5)	intron (NM_001037175, intron 5 of 5)	-101552	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
215159	chr7	155533921	155534530	+	0	NA	promoter-TSS (NM_001103176)	promoter-TSS (NM_001103176)	-363	NM_001103176	285888		NM_001103176	ENSG00000146910	CNPY1	-	canopy FGF signaling regulator 1	protein-coding
87619	chr16	74383251	74383550	+	0	NA	intron (NM_001306094, intron 2 of 6)	intron (NM_001306094, intron 2 of 6)	5448	NM_001306094	440348		NM_001018059	ENSG00000196436	NPIPB15	A-761H5.4|NPIPL2	nuclear pore complex interacting protein family member B15	protein-coding
44656	chr11	110349121	110349930	+	0	NA	Intergenic	Intergenic	-5589	NR_135100	105369486		NR_135100		LINC02732	-	long intergenic non-protein coding RNA 2732	ncRNA
170463	chr3	185922851	185923650	+	0	NA	intron (NM_001243879, intron 3 of 7)	AluSp|SINE|Alu	14764	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
65778	chr14	54486601	54487300	+	0	NA	intron (NM_004124, intron 1 of 6)	L2|LINE|L2	2030	NM_004124	2764		NM_004124	ENSG00000197045	GMFB	GMF	glia maturation factor beta	protein-coding
132170	chr2	101772951	101773450	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	74935	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
10823	chr1	77938771	77939130	+	0	NA	intron (NM_144573, intron 11 of 12)	intron (NM_144573, intron 11 of 12)	40122	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
18240	chr1	161047471	161048830	+	0	NA	exon (NM_001287602, exon 8 of 8)	exon (NM_001287602, exon 8 of 8)	-2173	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
184054	chr5	91421621	91421950	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-38468	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
39416	chr11	60858321	60859200	+	0	NA	Intergenic	Intergenic	-2810	NM_004778	11251		NM_004778	ENSG00000183134	PTGDR2	CD294|CRTH2|DL1R|DP2|GPR44	prostaglandin D2 receptor 2	protein-coding
10992	chr1	84503701	84504230	+	0	NA	intron (NM_005274, intron 2 of 3)	L2b|LINE|L2	-2421	NM_001310156	100505741		NM_022354	ENSG00000122432	SPATA1	SP-2|SPAP1	spermatogenesis associated 1	protein-coding
232676	chr9	136514751	136515050	+	0	NA	intron (NM_017617, intron 12 of 33)	MIR3|SINE|MIR	4726	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
188914	chr5	160345251	160345630	+	0	NA	Intergenic	Intergenic	-5870	NR_131769	79616		NM_024565	ENSG00000135083	CCNJL	-	cyclin J like	protein-coding
109828	chr19	1176251	1176750	+	0	NA	Intergenic	Intergenic	-2232	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
99129	chr17	49232071	49233100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1798	NM_178500	162466		NM_178500	ENSG00000173868	PHOSPHO1	-	phosphoethanolamine/phosphocholine phosphatase 1	protein-coding
79226	chr16	370261	371730	+	0	NA	promoter-TSS (NM_006428)	promoter-TSS (NM_006428)	-457	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
159679	chr3	15462621	15462880	+	0	NA	intron (NM_080538, intron 12 of 16)	L2c|LINE|L2	33558	NR_036232	100422868		NR_036232	ENSG00000263573	MIR4270	-	microRNA 4270	ncRNA
153764	chr22	29479351	29479450	+	0	NA	promoter-TSS (NM_021076)	promoter-TSS (NM_021076)	-818	NM_021076	4744		NM_021076	ENSG00000100285	NEFH	CMT2CC|NFH	neurofilament heavy chain	protein-coding
118276	chr19	35277021	35277480	+	0	NA	intron (NM_001321150, intron 5 of 7)	intron (NM_001321150, intron 5 of 7)	-5278	NM_021175	57817		NM_021175	ENSG00000105697	HAMP	HEPC|HFE2B|LEAP1|PLTR	hepcidin antimicrobial peptide	protein-coding
35064	chr11	604401	604600	+	0	NA	intron (NM_001286582, intron 10 of 17)	intron (NM_001286582, intron 10 of 17)	11450	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
143494	chr20	31185201	31185750	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-72189	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
174038	chr4	26867751	26868130	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	7099	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
103291	chr17	77845001	77845200	+	0	NA	Intergenic	Intergenic	38987	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
181984	chr5	55185771	55186400	+	0	NA	Intergenic	AluY|SINE|Alu	-12908	NM_152623	166979		NM_152623	ENSG00000164287	CDC20B	G6VTS76519	cell division cycle 20B	protein-coding
37344	chr11	14890701	14891700	+	0	NA	5' UTR (NM_001377217, exon 1 of 6)	5' UTR (NM_001377217, exon 1 of 6)	471	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
157477	chr22	45299051	45299630	+	0	NA	Intergenic	LTR75|LTR|ERVL	-9620	NR_146323	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
162068	chr3	46866571	46867300	+	0	NA	Intergenic	Intergenic	-3491	NM_000258	4634		NM_000258	ENSG00000160808	MYL3	CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl	myosin light chain 3	protein-coding
78107	chr15	90286471	90287080	+	0	NA	Intergenic	Intergenic	-21016	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
50564	chr12	48165161	48165680	+	0	NA	Intergenic	L2a|LINE|L2	-7905	NM_001319296	140461		NM_024095	ENSG00000177981	ASB8	PP14212	ankyrin repeat and SOCS box containing 8	protein-coding
129265	chr2	68386671	68386830	+	0	NA	intron (NM_002664, intron 5 of 8)	intron (NM_002664, intron 5 of 8)	21468	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
225716	chr9	36764251	36764930	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	59009	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA
61949	chr13	78866351	78866450	+	0	NA	Intergenic	L1P2|LINE|L1	-26350	NR_046869	100874126		NR_046869		LINC00331	NCRNA00331	long intergenic non-protein coding RNA 331	ncRNA
65941	chr14	55433601	55434600	+	0	NA	intron (NM_199047, intron 3 of 6)	MIR|SINE|MIR	6445	NM_199047	387332		NM_199047	ENSG00000182521	TBPL2	TBP2|TRF3	TATA-box binding protein like 2	protein-coding
92606	chr17	9666551	9666650	+	0	NA	intron (NM_001267576, intron 2 of 14)	intron (NM_001267576, intron 2 of 14)	21063	NM_001267576	124739		NM_153210	ENSG00000154914	USP43	-	ubiquitin specific peptidase 43	protein-coding
43939	chr11	93526901	93527500	+	0	NA	intron (NM_020179, intron 1 of 2)	intron (NM_020179, intron 1 of 2)	16191	NM_020179	56935		NM_020179	ENSG00000166002	SMCO4	C11orf75|FN5	single-pass membrane protein with coiled-coil domains 4	protein-coding
82940	chr16	21850721	21851730	+	0	NA	intron (NM_001310148, intron 2 of 7)	G-rich|Low_complexity|Low_complexity	6432	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
77195	chr15	80776471	80776730	+	0	NA	Intergenic	Intergenic	-2770	NM_001293304	57214		NM_018689	ENSG00000103888	CEMIP	CCSP1|CEMIP1|HYBID|KIAA1199|TMEM2L	cell migration inducing hyaluronidase 1	protein-coding
46622	chr11	128621501	128622100	+	0	NA	Intergenic	Intergenic	-34242	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
226206	chr9	65386421	65387200	+	0	NA	Intergenic	SST1|Satellite|centr	-101601	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
204092	chr7	2111071	2111430	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-22198	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
142987	chr20	20207571	20208130	+	0	NA	intron (NM_015585, intron 17 of 26)	intron (NM_015585, intron 17 of 26)	151204	NM_001167816	26074		NM_015585	ENSG00000089101	CFAP61	C20orf26|CaM-IP3|SPGF84|dJ1002M8.3|dJ1178H5.4	cilia and flagella associated protein 61	protein-coding
25841	chr10	11224171	11224330	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	59220	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
21849	chr1	207366621	207366880	+	0	NA	Intergenic	MLT2B2|LTR|ERVL	45072	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
196607	chr6	44241971	44242130	+	0	NA	Intergenic	AluJo|SINE|Alu	-4116	NM_001271970	3326		NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
62167	chr13	97262271	97262600	+	0	NA	intron (NM_001382682, intron 1 of 7)	intron (NM_001382682, intron 1 of 7)	40102	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
128489	chr2	58238621	58238880	+	0	NA	intron (NR_164659, intron 1 of 11)	A-rich|Low_complexity|Low_complexity	2557	NR_164659	55120		NM_018062	ENSG00000115392	FANCL	FAAP43|PHF9|POG	FA complementation group L	protein-coding
77408	chr15	83206651	83208380	+	0	NA	5' UTR (NM_016073, exon 1 of 6)	5' UTR (NM_016073, exon 1 of 6)	308	NM_016073	50810		NM_016073	ENSG00000166503	HDGFL3	CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3	HDGF like 3	protein-coding
162096	chr3	46899751	46900350	+	0	NA	intron (NM_001184744, intron 9 of 14)	intron (NM_001184744, intron 9 of 14)	17801	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
144512	chr20	35695971	35696450	+	0	NA	intron (NR_037570, intron 4 of 13)	intron (NR_037570, intron 4 of 13)	3142	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
43288	chr11	75979401	75979600	+	0	NA	intron (NM_003369, intron 7 of 14)	L1PA6|LINE|L1	164290	NM_003369	7405		NM_003369	ENSG00000198382	UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
77160	chr15	79993151	79993750	+	0	NA	Intergenic	Intergenic	-22254	NM_004049	597		NM_004049	ENSG00000140379	BCL2A1	ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1	BCL2 related protein A1	protein-coding
90505	chr17	1458821	1459350	+	0	NA	Intergenic	AluY|SINE|Alu	-2853	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
204149	chr7	2382201	2382600	+	0	NA	Intergenic	Intergenic	-21211	NM_001243795	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
121419	chr19	47005851	47006450	+	0	NA	Intergenic	Intergenic	-13687	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
134147	chr2	134205051	134205550	+	0	NA	intron (NM_001371457, intron 1 of 16)	L2a|LINE|L2	-48772	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
183564	chr5	80141371	80141530	+	0	NA	3' UTR (NM_001174072, exon 12 of 12)	3' UTR (NM_001174072, exon 12 of 12)	-57785	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
25148	chr10	4372751	4372930	+	0	NA	Intergenic	Intergenic	-11406	NR_108055	100507059		NR_108054	ENSG00000224382	LINC00703	-	long intergenic non-protein coding RNA 703	ncRNA
174974	chr4	49635121	49635580	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	648708	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
69340	chr14	93954401	93954600	+	0	NA	intron (NM_016150, intron 1 of 7)	intron (NM_016150, intron 1 of 7)	2547	NM_016150	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
28516	chr10	50394971	50395480	+	0	NA	intron (NM_147156, intron 6 of 10)	intron (NM_147156, intron 6 of 10)	-143709	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
145729	chr20	45057901	45058330	+	0	NA	intron (NM_001352385, intron 11 of 11)	intron (NM_001352385, intron 11 of 11)	43012	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
213431	chr7	138459721	138461530	+	0	NA	exon (NM_003852, exon 1 of 19)	exon (NM_003852, exon 1 of 19)	366	NM_003852	8805		NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
176300	chr4	87375701	87376300	+	0	NA	intron (NM_016245, intron 2 of 6)	MIRb|SINE|MIR	15188	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
196957	chr6	52815301	52815800	+	0	NA	Intergenic	Intergenic	-11734	NM_145740	2938		NM_145740	ENSG00000243955	GSTA1	GST-epsilon|GST2|GSTA1-1|GTH1	glutathione S-transferase alpha 1	protein-coding
42247	chr11	68119601	68119800	+	0	NA	intron (NM_212469, intron 1 of 10)	AluSc|SINE|Alu	1688	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
234997	chrX	39791851	39792030	+	0	NA	Intergenic	Intergenic	-45621	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
104999	chr17	82018901	82019230	+	0	NA	3' UTR (NM_144998, exon 4 of 4)	3' UTR (NM_144998, exon 4 of 4)	3813	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
98388	chr17	46553521	46553780	+	0	NA	3' UTR (NM_001113738, exon 4 of 4).4	3' UTR (NM_001113738, exon 4 of 4).4	26041	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
150986	chr21	44340951	44341250	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-1710	NM_001271440	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
219162	chr8	66467501	66468300	+	0	NA	intron (NM_144650, intron 13 of 13)	intron (NM_144650, intron 13 of 13)	-25666	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
30300	chr10	75232021	75232630	+	0	NA	TTS (NM_001184823)	TTS (NM_001184823)	3632	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
68758	chr14	91057401	91057800	+	0	NA	intron (NM_001322235, intron 1 of 17)	intron (NM_001322235, intron 1 of 17)	2524	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
48649	chr12	10417601	10418000	+	0	NA	intron (NM_002261, intron 4 of 6)	L1ME3A|LINE|L1	2795	NM_002261	3823		NM_002261	ENSG00000205810	KLRC3	NKG2-E|NKG2E	killer cell lectin like receptor C3	protein-coding
51490	chr12	52094121	52096400	+	0	NA	intron (NR_120440, intron 1 of 1)	SATR1|Satellite|Satellite	1691	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
26765	chr10	22727021	22727580	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-12722	NM_005028	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
1749	chr1	6003021	6003380	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	10524	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
76830	chr15	77187721	77188250	+	0	NA	intron (NM_001385027, intron 5 of 6)	intron (NM_001385027, intron 5 of 6)	37419	NR_026813	81698		NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	ncRNA
17917	chr1	160213921	160214180	+	0	NA	non-coding (NR_123724, exon 3 of 3)	non-coding (NR_123724, exon 3 of 3)	-5181	NR_123725	729867		NR_123725	ENSG00000227741	LOC729867	-	uncharacterized LOC729867	ncRNA
178595	chr4	151801251	151802000	+	0	NA	Intergenic	Intergenic	-40602	NM_001363341	5188		NM_004564	ENSG00000059691	GATB	COXPD41|HSPC199|PET112|PET112L	glutamyl-tRNA amidotransferase subunit B	protein-coding
211376	chr7	105006371	105007330	+	0	NA	Intergenic	Intergenic	7291	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
225133	chr9	33623801	33624430	+	0	NA	promoter-TSS (NR_003573)	promoter-TSS (NR_003573)	-110	NR_003573	304		NR_003573		ANXA2P2	ANX2L2|ANX2P2|LPC2B	annexin A2 pseudogene 2	pseudo
208877	chr7	73811621	73812000	+	0	NA	Intergenic	Intergenic	-19186	NM_001305	1364		NM_001305	ENSG00000189143	CLDN4	CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R	claudin 4	protein-coding
81025	chr16	4261371	4262250	+	0	NA	exon (NM_003223, exon 4 of 7)	exon (NM_003223, exon 4 of 7)	-8021	NR_039999	100507501		NR_039999		LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA
71617	chr14	106690551	106690900	+	0	NA	Intergenic	Intergenic	160274	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
98512	chr17	47528271	47528630	+	0	NA	intron (NM_001330257, intron 1 of 23)	intron (NM_001330257, intron 1 of 23)	-2658	NM_006310	9520		NM_006310	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
20133	chr1	192552571	192553150	+	0	NA	Intergenic	Intergenic	-22913	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
138879	chr2	217398901	217399100	+	0	NA	intron (NR_026597, intron 8 of 12)	intron (NR_026597, intron 8 of 12)	116267	NR_133642	105373877		NR_133642		DIRC3-AS1	-	DIRC3 antisense RNA 1	ncRNA
165039	chr3	71425751	71426100	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	116164	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
51465	chr12	52059471	52060000	+	0	NA	TTS (NM_001202234)	TTS (NM_001202234)	8293	NM_173157	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
99097	chr17	49014021	49014750	+	0	NA	intron (NM_001160423, intron 2 of 12)	intron (NM_001160423, intron 2 of 12)	17000	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
114775	chr19	13757751	13758250	+	0	NA	intron (NM_001320561, intron 7 of 10)	L2a|LINE|L2	-6522	NM_032285	84245		NM_032285	ENSG00000037757	MRI1	M1Pi|MRDI|MTNA|Ypr118w	methylthioribose-1-phosphate isomerase 1	protein-coding
26790	chr10	23330371	23330800	+	0	NA	intron (NM_001371909, intron 2 of 15)	AluY|SINE|Alu	-13372	NR_155752	105376453		NR_155752	ENSG00000224215	C10orf67-AS1	-	C10orf67 antisense RNA 1	ncRNA
68278	chr14	77088021	77088480	+	0	NA	Intergenic	Intergenic	-10008	NM_033426	85457		NM_033426	ENSG00000198894	CIPC	KIAA1737	CLOCK interacting pacemaker	protein-coding
60980	chr13	46667901	46668930	+	0	NA	intron (NM_015116, intron 2 of 18)	intron (NM_015116, intron 2 of 18)	115245	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
168818	chr3	152225351	152225450	+	0	NA	Intergenic	Intergenic	-18232	NM_001376839	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
216425	chr8	19399201	19399600	+	0	NA	Intergenic	AluJo|SINE|Alu	85424	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
16891	chr1	155860001	155861150	+	0	NA	intron (NM_152280, intron 1 of 3)	CpG	1008	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
16405	chr1	154442321	154442780	+	0	NA	intron (NM_181359, intron 6 of 8)	intron (NM_181359, intron 6 of 8)	-35986	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
5654	chr1	26286871	26288000	+	0	NA	intron (NM_001077262, intron 4 of 10)	intron (NM_001077262, intron 4 of 10)	7349	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
162404	chr3	48232651	48233230	+	0	NA	Intergenic	Intergenic	-8164	NM_016089	51385		NM_016089	ENSG00000164048	ZNF589	SZF1	zinc finger protein 589	protein-coding
206702	chr7	36513371	36513730	+	0	NA	intron (NM_001637, intron 20 of 20)	MLT1E1A|LTR|ERVL-MaLR	86570	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
117820	chr19	29978101	29978400	+	0	NA	intron (NM_001252641, intron 2 of 10)	Tigger8|DNA|TcMar-Tigger	36011	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
235930	chrX	53193371	53193950	+	0	NA	intron (NR_148673, intron 24 of 26)	intron (NR_148673, intron 24 of 26)	1828	NR_106955	102465539		NR_106955	ENSG00000276575	MIR6895	hsa-mir-6895	microRNA 6895	ncRNA
213396	chr7	136086721	136087040	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-109521	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
208371	chr7	66635701	66636650	+	0	NA	intron (NM_153033, intron 2 of 3)	intron (NM_153033, intron 2 of 3)	7294	NM_153033	154881		NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
222372	chr8	133615121	133615600	+	0	NA	Intergenic	Intergenic	-43473	NM_173344	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
150578	chr21	43172471	43172630	+	0	NA	3' UTR (NM_001363766, exon 3 of 3).2	3' UTR (NM_001363766, exon 3 of 3).2	2314	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
118249	chr19	35239051	35239350	+	0	NA	Intergenic	L2a|LINE|L2	-9802	NM_015925	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
155432	chr22	38456021	38457100	+	0	NA	Intergenic	Intergenic	-1361	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
126511	chr2	28418501	28418700	+	0	NA	Intergenic	MIRc|SINE|MIR	-23928	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
100991	chr17	64630901	64631350	+	0	NA	intron (NM_022739, intron 1 of 18)	AluJr|SINE|Alu	31182	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
159646	chr3	15317971	15318330	+	0	NA	intron (NM_001018009, intron 2 of 8)	MIR|SINE|MIR	14436	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
232649	chr9	136477721	136478430	+	0	NA	intron (NM_001276418, intron 1 of 28)	intron (NM_001276418, intron 1 of 28)	-4935	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
24666	chr1	247113151	247113650	+	0	NA	promoter-TSS (NR_167894)	promoter-TSS (NR_167894)	-983	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
229709	chr9	124779551	124779850	+	0	NA	intron (NM_182487, intron 1 of 7)	intron (NM_182487, intron 1 of 7)	2567	NM_182487	169611		NM_182487	ENSG00000185585	OLFML2A	PRO34319	olfactomedin like 2A	protein-coding
23816	chr1	234408571	234409630	+	0	NA	intron (NM_005646, intron 23 of 29)	intron (NM_005646, intron 23 of 29)	35399	NM_001301733	388753		NM_001012985	ENSG00000168275	COA6	C1orf31|CEMCOX4|MC4DN13	cytochrome c oxidase assembly factor 6	protein-coding
102647	chr17	76050171	76050330	+	0	NA	intron (NR_048541, intron 8 of 14)	intron (NR_048541, intron 8 of 14)	3406	NM_001260503	6730		NM_014230	ENSG00000167881	SRP68	SCN10	signal recognition particle 68	protein-coding
224538	chr9	19232901	19233630	+	0	NA	intron (NM_001330640, intron 1 of 32)	intron (NM_001330640, intron 1 of 32)	2572	NR_073201	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
111324	chr19	3626121	3627550	+	0	NA	promoter-TSS (NM_001080543)	promoter-TSS (NM_001080543)	-20	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
16198	chr1	153827401	153828000	+	0	NA	intron (NM_020699, intron 2 of 10)	intron (NM_020699, intron 2 of 10)	33753	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
196365	chr6	43235001	43235400	+	0	NA	Intergenic	AluJb|SINE|Alu	-5719	NM_006443	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
161888	chr3	45947821	45948080	+	0	NA	3' UTR (NM_006564, exon 2 of 2)	3' UTR (NM_006564, exon 2 of 2)	4486	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
125364	chr2	11125351	11125650	+	0	NA	intron (NR_040080, intron 3 of 8)	intron (NR_040080, intron 3 of 8)	6676	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
126836	chr2	31170121	31170400	+	0	NA	Intergenic	Intergenic	-31820	NM_001253826	79623		NM_024572	ENSG00000158089	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
14322	chr1	143886721	143886980	+	0	NA	intron (NR_160914, intron 1 of 2)	L1M5|LINE|L1	12107	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
141102	chr2	238428551	238428650	+	0	NA	intron (NM_001040445, intron 1 of 4)	intron (NM_001040445, intron 1 of 4)	1673	NM_001330196	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
64080	chr14	22579301	22579880	+	0	NA	intron (NM_001344, intron 1 of 2)	L1ME3G|LINE|L1	9634	NM_001344	1603		NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
95524	chr17	36551571	36551730	+	0	NA	intron (NM_024835, intron 2 of 13)	AluSx|SINE|Alu	6731	NM_024835	79893		NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
126497	chr2	28404571	28404730	+	0	NA	intron (NM_005253, intron 2 of 3)	intron (NM_005253, intron 2 of 3)	-9978	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
211043	chr7	102431701	102432300	+	0	NA	Intergenic	Intergenic	-1530	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
159990	chr3	18347021	18347280	+	0	NA	3' UTR (NM_001322872, exon 12 of 12)	3' UTR (NM_001322872, exon 12 of 12)	78189	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
47096	chr12	640971	641230	+	0	NA	intron (NR_122124, intron 4 of 4)	intron (NR_122124, intron 4 of 4)	2536	NM_001294346	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
119910	chr19	41623421	41623680	+	0	NA	intron (NM_001362493, intron 1 of 5)	L1MCa|LINE|L1	3524	NM_001362492	1089		NM_001817	ENSG00000105352	CEACAM4	CGM7|CGM7_HUMAN|NCA	CEA cell adhesion molecule 4	protein-coding
136253	chr2	174629601	174630030	+	0	NA	5' UTR (NM_001375832, exon 2 of 9)	5' UTR (NM_001375832, exon 2 of 9)	4790	NM_001375837	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
167238	chr3	128487481	128488230	+	0	NA	promoter-TSS (NM_001145662)	promoter-TSS (NM_001145662)	66	NM_001145662	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
182477	chr5	62392601	62392800	+	0	NA	intron (NM_001348077, intron 9 of 11)	intron (NM_001348077, intron 9 of 11)	11205	NM_014473	27292		NM_014473	ENSG00000086189	DIMT1	DIM1|DIMT1L|HSA9761|HUSSY5	DIM1 rRNA methyltransferase and ribosome maturation factor	protein-coding
219078	chr8	65831271	65831900	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	10479	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
107692	chr18	49485321	49485930	+	0	NA	intron (NM_001199355, intron 5 of 6)	AluJb|SINE|Alu	1609	NM_001199346	497661		NM_001035005	ENSG00000177576	C18orf32	GPIBD25	chromosome 18 open reading frame 32	protein-coding
200141	chr6	130267701	130267900	+	0	NA	intron (NM_001258275, intron 2 of 13)	LTR2B|LTR|ERV1	-44849	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
89969	chr16	89819021	89820280	+	0	NA	Intergenic	AluJb|SINE|Alu	-3003	NM_000135	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
17652	chr1	157369971	157370230	+	0	NA	Intergenic	Intergenic	182415	NM_031281	83416		NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
239492	chrY	56751651	56752180	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-202340	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
62369	chr13	99227521	99228150	+	0	NA	intron (NR_026644, intron 1 of 8)	intron (NR_026644, intron 1 of 8)	26981	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
79703	chr16	1303021	1303640	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5822	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
105382	chr17	82710451	82710950	+	0	NA	Intergenic	Intergenic	5553	NR_136400	101929552		NR_136400	ENSG00000263063	LOC101929552	-	uncharacterized LOC101929552	ncRNA
149991	chr21	36965671	36967880	+	0	NA	promoter-TSS (NM_001242784)	promoter-TSS (NM_001242784)	-106	NM_001352514	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
15740	chr1	151073771	151073930	+	0	NA	intron (NM_001323912, intron 2 of 7)	AluSg|SINE|Alu	3089	NM_001323912	126626		NM_144618	ENSG00000143458	GABPB2	GABPB-2	GA binding protein transcription factor subunit beta 2	protein-coding
88184	chr16	81729451	81729550	+	0	NA	Intergenic	Intergenic	-49791	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
93812	chr17	20666751	20666860	+	0	NA	Intergenic	Intergenic	-33554	NR_146887	105371582		NR_146887	ENSG00000227685	LINC02088	-	long intergenic non-protein coding RNA 2088	ncRNA
7610	chr1	35434371	35434530	+	0	NA	3' UTR (NM_024874, exon 21 of 21)	3' UTR (NM_024874, exon 21 of 21)	-68373	NR_046659	100861513		NR_046659	ENSG00000227409	ZMYM4-AS1	-	ZMYM4 antisense RNA 1	ncRNA
185879	chr5	132673201	132673400	+	0	NA	promoter-TSS (NM_001354990)	promoter-TSS (NM_001354990)	-686	NM_001354990	3565		NM_000589	ENSG00000113520	IL4	BCGF-1|BCGF1|BSF-1|BSF1|IL-4	interleukin 4	protein-coding
94662	chr17	30323071	30324300	+	0	NA	intron (NM_206832, intron 4 of 6)	intron (NM_206832, intron 4 of 6)	10372	NM_001319942	388364		NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
71952	chr15	23187151	23187250	+	0	NA	intron (NM_001271664, intron 8 of 9)	L1MEf|LINE|L1	-10627	NR_039732	100616223		NR_039732	ENSG00000276941	MIR4509-1	-	microRNA 4509-1	ncRNA
19667	chr1	180633751	180634030	+	0	NA	intron (NR_137330, intron 1 of 12)	intron (NR_137330, intron 1 of 12)	1868	NR_137330	9213		NM_004736	ENSG00000143324	XPR1	IBGC6|SLC53A1|SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
153286	chr22	24164571	24164730	+	0	NA	intron (NM_012295, intron 30 of 36)	intron (NM_012295, intron 30 of 36)	-16837	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
78309	chr15	90928451	90928800	+	0	NA	Intergenic	L1MEi|LINE|L1	-1555	NM_001039675	55898		NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|OOHE|SMAP-1|SMAP1|UNC-45A	unc-45 myosin chaperone A	protein-coding
218224	chr8	42035971	42036330	+	0	NA	intron (NM_001305878, intron 2 of 13)	L2|LINE|L2	-15600	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
147445	chr20	58917671	58917830	+	0	NA	Intergenic	AluY|SINE|Alu	25587	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
138846	chr2	216519171	216519530	+	0	NA	Intergenic	Intergenic	20506	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
219934	chr8	86514171	86515280	+	0	NA	promoter-TSS (NM_001317807)	promoter-TSS (NM_001317807)	290	NM_003909	8895		NM_003909	ENSG00000085719	CPNE3	CPN3|PRO1071	copine 3	protein-coding
101271	chr17	66351801	66352400	+	0	NA	intron (NM_002737, intron 2 of 16)	MLT1O|LTR|ERVL-MaLR	49487	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
74445	chr15	59492851	59493550	+	0	NA	intron (NM_152450, intron 4 of 8)	intron (NM_152450, intron 4 of 8)	55014	NM_152450	145773		NM_152450	ENSG00000157470	FAM81A	-	family with sequence similarity 81 member A	protein-coding
211349	chr7	104951801	104952200	+	0	NA	Intergenic	Intergenic	-25355	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
132624	chr2	108619671	108619830	+	0	NA	intron (NM_001193482, intron 1 of 9)	intron (NM_001193482, intron 1 of 9)	-1501	NM_001193484	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
76728	chr15	76190521	76191630	+	0	NA	intron (NM_152335, intron 8 of 10)	intron (NM_152335, intron 8 of 10)	-9589	NR_120360	101929439		NR_120360	ENSG00000259422	LOC101929439	-	uncharacterized LOC101929439	ncRNA
53847	chr12	69602121	69602780	+	0	NA	TTS (NM_001198842)	TTS (NM_001198842)	8457	NM_201550	376132		NM_201550	ENSG00000198812	LRRC10	HRLRRP|LRRC10A	leucine rich repeat containing 10	protein-coding
36870	chr11	10458951	10459550	+	0	NA	intron (NM_001025390, intron 1 of 14)	intron (NM_001025390, intron 1 of 14)	-1881	NM_001172430	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
131758	chr2	98467021	98467700	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	21350	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
81360	chr16	4839051	4839350	+	0	NA	intron (NR_136700, intron 3 of 14)	(CA)n|Simple_repeat|Simple_repeat	8088	NM_032569	84656		NM_032569	ENSG00000140632	GLYR1	BM045|HIBDL|N-PAC|NP60|NPAC|hNDF	glyoxylate reductase 1 homolog	protein-coding
197088	chr6	56904551	56905030	+	0	NA	intron (NM_001374736, intron 2 of 103)	intron (NM_001374736, intron 2 of 103)	50040	NM_001374722	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
184440	chr5	99037551	99038350	+	0	NA	Intergenic	L1PA7|LINE|L1	108816	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
141474	chr2	241079871	241080230	+	0	NA	intron (NR_138463, intron 6 of 6)	AluSz|SINE|Alu	22237	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
229631	chr9	124110371	124110600	+	0	NA	Intergenic	Intergenic	98717	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
190894	chr6	2768701	2769230	+	0	NA	intron (NM_130395, intron 2 of 6)	MIRc|SINE|MIR	1411	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
122973	chr19	50793151	50793250	+	0	NA	intron (NM_033068, intron 6 of 10)	intron (NM_033068, intron 6 of 10)	2785	NM_033068	93650		NM_033068	ENSG00000142513	ACP4	ACPT|AI1J	acid phosphatase 4	protein-coding
186993	chr5	139713951	139714250	+	0	NA	Intergenic	AluSx|SINE|Alu	32123	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
99327	chr17	49840151	49840680	+	0	NA	intron (NM_001077503, intron 2 of 3)	intron (NM_001077503, intron 2 of 3)	-5471	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
35998	chr11	2889971	2890130	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-4275	NM_001362474	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
81395	chr16	5108551	5108850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-10880	NM_001289029	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
228095	chr9	96425571	96426530	+	0	NA	Intergenic	L1MC4a|LINE|L1	-7680	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
104670	chr17	81493001	81493600	+	0	NA	Intergenic	Intergenic	19499	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
135914	chr2	171517451	171517550	+	0	NA	Intergenic	CpG	-4733	NM_001256909	79901		NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
201455	chr6	148566471	148567180	+	0	NA	Intergenic	Intergenic	57674	NM_001346509	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
204176	chr7	2450421	2450780	+	0	NA	Intergenic	LTR81B|LTR|Gypsy	25783	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
132723	chr2	109150601	109150800	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-9112	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
208658	chr7	73123771	73124130	+	0	NA	intron (NM_001382504, intron 2 of 9)	AluJb|SINE|Alu	-30974	NR_003580	100093631		NR_003580	ENSG00000293241	GTF2IP4	GTF2I	general transcription factor IIi pseudogene 4	pseudo
96079	chr17	39604971	39605130	+	0	NA	3' UTR (NM_006160, exon 2 of 2)	3' UTR (NM_006160, exon 2 of 2)	2870	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
180778	chr5	32173361	32175380	+	0	NA	promoter-TSS (NM_022130)	promoter-TSS (NM_022130)	-51	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
72711	chr15	38654251	38654550	+	0	NA	Intergenic	AluSz|SINE|Alu	-42198	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
63916	chr14	21965051	21965730	+	0	NA	Intergenic	Intergenic	-294373	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
21413	chr1	205297421	205298430	+	0	NA	Intergenic	AluSz|SINE|Alu	23820	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
54598	chr12	92505071	92505950	+	0	NA	Intergenic	Intergenic	38831	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
112771	chr19	7466721	7467180	+	0	NA	exon (NM_001130955, exon 14 of 20)	exon (NM_001130955, exon 14 of 20)	22085	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
213368	chr7	135900221	135900680	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	76909	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
46755	chr11	129375521	129376180	+	0	NA	promoter-TSS (NM_003658)	promoter-TSS (NM_003658)	2	NM_003658	8538		NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
52181	chr12	54322821	54323530	+	0	NA	Intergenic	AluY|SINE|Alu	-1956	NR_073424	22818		NM_016057	ENSG00000111481	COPZ1	CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP	COPI coat complex subunit zeta 1	protein-coding
143006	chr20	20568571	20568830	+	0	NA	intron (NM_020343, intron 23 of 39)	intron (NM_020343, intron 23 of 39)	143944	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
205983	chr7	26178221	26178950	+	0	NA	intron (NM_004289, intron 2 of 3)	intron (NM_004289, intron 2 of 3)	22161	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
118027	chr19	34192351	34192450	+	0	NA	5' UTR (NM_001384431, exon 2 of 12).2	5' UTR (NM_001384431, exon 2 of 12).2	19896	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
65258	chr14	49929901	49930300	+	0	NA	Intergenic	AluSx|SINE|Alu	-36299	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
208908	chr7	74027801	74028150	+	0	NA	promoter-TSS (NM_001278913)	promoter-TSS (NM_001278913)	186	NM_001278918	2006		NM_000501	ENSG00000049540	ELN	ADCL1|SVAS|WBS|WS	elastin	protein-coding
5911	chr1	26833271	26834550	+	0	NA	intron (NM_032283, intron 2 of 7)	intron (NM_032283, intron 2 of 7)	7222	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
16356	chr1	154333501	154333930	+	0	NA	intron (NM_001367934, intron 8 of 26)	AluSq|SINE|Alu	4917	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
519	chr1	1214721	1215660	+	0	NA	Intergenic	Intergenic	-1037	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
106354	chr18	13216121	13216800	+	0	NA	Intergenic	MIRb|SINE|MIR	-1222	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
20880	chr1	202137821	202138550	+	0	NA	intron (NM_001256129, intron 2 of 5)	intron (NM_001256129, intron 2 of 5)	6552	NM_138795	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
97489	chr17	43846251	43847050	+	0	NA	promoter-TSS (NM_001168324)	promoter-TSS (NM_001168324)	-526	NM_001168322	146894		NM_145273	ENSG00000161649	CD300LG	CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4	CD300 molecule like family member g	protein-coding
7978	chr1	37890401	37890850	+	0	NA	5' UTR (NM_001350228, exon 5 of 21)	5' UTR (NM_001350228, exon 5 of 21)	-31033	NM_005955	4520		NM_005955	ENSG00000188786	MTF1	MTF-1|ZRF	metal regulatory transcription factor 1	protein-coding
205212	chr7	7868621	7868880	+	0	NA	intron (NM_001302350, intron 4 of 4)	intron (NM_001302350, intron 4 of 4)	100002	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
19378	chr1	174001471	174001630	+	0	NA	intron (NM_172071, intron 1 of 19)	AluSz6|SINE|Alu	-8478	NM_001300851	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
230645	chr9	128688001	128690980	+	0	NA	promoter-TSS (NM_001248001)	promoter-TSS (NM_001248001)	268	NM_003011	6418		NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|MRD58|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
179107	chr4	168678701	168679100	+	0	NA	intron (NM_001166108, intron 3 of 21)	(GT)n|Simple_repeat|Simple_repeat	47322	NM_001166109	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
193428	chr6	30466321	30467350	+	0	NA	Intergenic	Intergenic	-22674	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
56713	chr12	120099951	120100250	+	0	NA	intron (NM_006861, intron 3 of 5)	intron (NM_006861, intron 3 of 5)	16653	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
162172	chr3	46989401	46989600	+	0	NA	intron (NM_001365116, intron 5 of 52)	intron (NM_001365116, intron 5 of 52)	1510	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
43106	chr11	74990351	74990680	+	0	NA	TTS (NM_001367867)	TTS (NM_001367867)	1582	NM_001367866	10825		NM_006656	ENSG00000162139	NEU3	SIAL3	neuraminidase 3	protein-coding
52888	chr12	57205771	57206600	+	0	NA	intron (NM_002332, intron 75 of 88)	intron (NM_002332, intron 75 of 88)	-10609	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
1414	chr1	2564421	2565850	+	0	NA	3' UTR (NM_003820, exon 8 of 8).2	3' UTR (NM_003820, exon 8 of 8).2	-1400	NR_121638	100996583		NR_121638	ENSG00000228037	LOC100996583	-	uncharacterized LOC100996583	ncRNA
76183	chr15	73244401	73244680	+	0	NA	intron (NM_001172623, intron 9 of 27)	intron (NM_001172623, intron 9 of 27)	-55370	NR_162148	113219462		NR_162148		MIR12135	-	microRNA 12135	ncRNA
51823	chr12	53446571	53446730	+	0	NA	TTS (NM_018457)	TTS (NM_018457)	4916	NM_018457	54458		NM_018457	ENSG00000205352	PRR13	TXR1	proline rich 13	protein-coding
227349	chr9	89470321	89470900	+	0	NA	intron (NM_001371194, intron 1 of 15)	L1ME1|LINE|L1	9280	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
220721	chr8	102032801	102033080	+	0	NA	intron (NM_001040625, intron 1 of 6)	ERVL-E-int|LTR|ERVL	48508	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
126479	chr2	28387371	28388150	+	0	NA	intron (NR_103831, intron 1 of 1)	intron (NR_103831, intron 1 of 1)	-5098	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
188563	chr5	157030601	157031400	+	0	NA	intron (NM_001308156, intron 7 of 7)	intron (NM_001308156, intron 7 of 7)	27241	NM_012206	26762		NM_012206	ENSG00000113249	HAVCR1	CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
123417	chr19	54093971	54094130	+	0	NA	TTS (NM_133168).2	TTS (NM_133168).2	8636	NM_001282350	126014		NM_130771	ENSG00000170909	OSCAR	PIGR3|PIgR-3	osteoclast associated Ig-like receptor	protein-coding
51992	chr12	53961921	53962380	+	0	NA	TTS (NR_047518)	TTS (NR_047518)	6606	NR_003716	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
172644	chr4	2547871	2548230	+	0	NA	intron (NM_001366318, intron 1 of 20)	L1ME1|LINE|L1	11403	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
178826	chr4	153567501	153567900	+	0	NA	intron (NM_015196, intron 7 of 34)	AluSq2|SINE|Alu	-72468	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
237672	chrX	124344071	124344230	+	0	NA	Intergenic	L2a|LINE|L2	-2132	NM_001114937	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
139864	chr2	230610501	230610700	+	0	NA	Intergenic	AluJr|SINE|Alu	89929	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
182499	chr5	64714471	64714730	+	0	NA	intron (NM_001164442, intron 2 of 2)	L1PA2|LINE|L1	24097	NM_001164442	100132916		NM_001164442	ENSG00000145642	SHISAL2B	FAM159B	shisa like 2B	protein-coding
25212	chr10	5719421	5719680	+	0	NA	intron (NM_017782, intron 3 of 20)	AluSc|SINE|Alu	34712	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
30471	chr10	79195201	79195950	+	0	NA	intron (NM_020338, intron 4 of 24)	intron (NM_020338, intron 4 of 24)	126609	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
36025	chr11	2917271	2917800	+	0	NA	intron (NM_183233, intron 6 of 10)	intron (NM_183233, intron 6 of 10)	11885	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
37383	chr11	16986151	16987050	+	0	NA	intron (NM_175058, intron 3 of 22)	intron (NM_175058, intron 3 of 22)	27814	NM_001329630	144100		NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding
109472	chr19	805201	805430	+	0	NA	TTS (NR_039900)	TTS (NR_039900)	375	NR_039900	100616459		NR_039900	ENSG00000284361	MIR4745	mir-4745	microRNA 4745	ncRNA
89747	chr16	89442251	89442350	+	0	NA	intron (NR_110932, intron 1 of 2)	intron (NR_110932, intron 1 of 2)	11382	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
62661	chr13	102457371	102457680	+	0	NA	Intergenic	Intergenic	-55082	NM_001321945	2259		NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|NYS4|SCA27|SCA27A|SCA27B	fibroblast growth factor 14	protein-coding
11564	chr1	91404271	91404830	+	0	NA	intron (NM_001017975, intron 1 of 38)	CpG	185	NR_165455	164045		NM_001017975	ENSG00000162669	HFM1	MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase	helicase for meiosis 1	protein-coding
34269	chr10	131885201	131885950	+	0	NA	Intergenic	CpG	-15433	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
185897	chr5	132773771	132773930	+	0	NA	intron (NM_001098813, intron 1 of 9)	intron (NM_001098813, intron 1 of 9)	3389	NM_015146	23176		NM_015146	ENSG00000164402	SEPTIN8	SEP2|SEPT8|Septin-8	septin 8	protein-coding
140565	chr2	233322001	233322550	+	0	NA	intron (NM_000541, intron 5 of 15)	L1ME4a|LINE|L1	14459	NM_000541	6295		NM_000541	ENSG00000130561	SAG	RP47|RP96|S-AG	S-antigen visual arrestin	protein-coding
75119	chr15	64514251	64514830	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	53962	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
71111	chr14	104896421	104897100	+	0	NA	TTS (NM_015005)	TTS (NM_015005)	-28119	NM_138790	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
189642	chr5	176065221	176065480	+	0	NA	intron (NR_169299, intron 1 of 26)	AluJb|SINE|Alu	1641	NM_001265615	202134		NM_001079529		FAM153B	-	protein FAM153B	pseudo
185436	chr5	131210871	131211100	+	0	NA	Intergenic	AluSz|SINE|Alu	40041	NM_001293735	90624		NM_181705	ENSG00000186687	LYRM7	C5orf31|MC3DN8|MZM1L	LYR motif containing 7	protein-coding
51781	chr12	53346271	53347380	+	0	NA	Intergenic	Intergenic	-2032	NM_001300837	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
55789	chr12	108630871	108631400	+	0	NA	intron (NM_003006, intron 1 of 1)	intron (NM_003006, intron 1 of 1)	946	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
12853	chr1	110079851	110080350	+	0	NA	Intergenic	(TCTAT)n|Simple_repeat|Simple_repeat	-2588	NR_126382	104355139		NR_126382	ENSG00000258673	LINC01397	-	long intergenic non-protein coding RNA 1397	ncRNA
13333	chr1	113794051	113794780	+	0	NA	intron (NM_018364, intron 2 of 6)	L2c|LINE|L2	18061	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
27071	chr10	27224871	27225400	+	0	NA	intron (NM_001301253, intron 3 of 11)	AluSg4|SINE|Alu	15351	NM_001301252	91452		NM_145698	ENSG00000107897	ACBD5	RDLKD	acyl-CoA binding domain containing 5	protein-coding
134168	chr2	134250971	134251330	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-2922	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
82442	chr16	16332501	16333300	+	0	NA	intron (NR_036447, intron 24 of 30)	L1M4|LINE|L1	-3030	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
172743	chr4	2836401	2836800	+	0	NA	3' UTR (NM_003023, exon 13 of 13)	3' UTR (NM_003023, exon 13 of 13)	-7244	NM_001354759	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
162229	chr3	47117871	47118430	+	0	NA	intron (NR_146158, intron 3 of 21)	intron (NR_146158, intron 3 of 21)	45963	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
216316	chr8	12731971	12732400	+	0	NA	intron (NM_001329976, intron 7 of 11).2	intron (NM_001329976, intron 7 of 11).2	-4881	NR_037492	100500870		NR_037492	ENSG00000266206	MIR3926-1	mir-3926-1	microRNA 3926-1	ncRNA
95216	chr17	35250201	35251700	+	0	NA	intron (NM_144975, intron 1 of 4)	MER89-int|LTR|ERV1	7878	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
164070	chr3	53889901	53890280	+	0	NA	intron (NM_021237, intron 1 of 4)	intron (NM_021237, intron 1 of 4)	1769	NM_021237	58515		NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
230971	chr9	129462051	129462150	+	0	NA	Intergenic	AluSq|SINE|Alu	-26560	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
145538	chr20	44186521	44187130	+	0	NA	5' UTR (NM_020433, exon 1 of 6)	5' UTR (NM_020433, exon 1 of 6)	363	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
191892	chr6	15343721	15344180	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	95095	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
69019	chr14	91512171	91512980	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2021	NR_169193	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
93958	chr17	21456951	21457880	+	0	NA	Intergenic	Intergenic	81058	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
71818	chr15	22148051	22148600	+	0	NA	Intergenic	Intergenic	12605	NR_135695	102724760		NR_135695		LOC102724760	-	immunoglobulin heavy variable 1/OR15-1 pseudogene	pseudo
140472	chr2	233178601	233179200	+	0	NA	intron (NM_001017915, intron 18 of 26).2	intron (NM_001017915, intron 18 of 26).2	-72671	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
206887	chr7	37687351	37687650	+	0	NA	intron (NM_001381946, intron 2 of 2)	intron (NM_001381946, intron 2 of 2)	3734	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
138391	chr2	204177651	204178230	+	0	NA	Intergenic	Intergenic	241177	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
136889	chr2	189312521	189312900	+	0	NA	Intergenic	L1PA12|LINE|L1	-128723	NM_001303096	84128		NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
123591	chr19	54469551	54470250	+	0	NA	intron (NM_145057, intron 2 of 2).4	intron (NM_145057, intron 2 of 2).4	3396	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
26481	chr10	17675921	17676180	+	0	NA	intron (NM_001324284, intron 3 of 14)	intron (NM_001324284, intron 3 of 14)	31899	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
166931	chr3	125119501	125120150	+	0	NA	intron (NM_024628, intron 7 of 13)	intron (NM_024628, intron 7 of 13)	31727	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
109565	chr19	890051	890430	+	0	NA	exon (NM_005481, exon 3 of 16)	exon (NM_005481, exon 3 of 16)	2947	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
210923	chr7	101230501	101231280	+	0	NA	Intergenic	Intergenic	6912	NM_014343	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
115860	chr19	16551671	16552430	+	0	NA	3' UTR (NM_024881, exon 6 of 6)	3' UTR (NM_024881, exon 6 of 6)	-9613	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
134196	chr2	134408571	134409130	+	0	NA	intron (NM_001371457, intron 12 of 16)	intron (NM_001371457, intron 12 of 16)	154778	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
1943	chr1	6544971	6546330	+	0	NA	intron (NM_024654, intron 3 of 11)	intron (NM_024654, intron 3 of 11)	8863	NM_024654	79707		NM_024654	ENSG00000162408	NOL9	Grc3|NET6	nucleolar protein 9	protein-coding
121820	chr19	47941051	47941750	+	0	NA	Intergenic	Intergenic	1859	NR_024218	100170219		NR_024218		SNAR-C4	-	small NF90 (ILF3) associated RNA C4	snRNA
234690	chrX	20382721	20383180	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-116041	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
140104	chr2	231468401	231469000	+	0	NA	Intergenic	Intergenic	-4216	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
162047	chr3	46717771	46718130	+	0	NA	promoter-TSS (NM_013270)	promoter-TSS (NM_013270)	-81	NM_013270	29122		NM_013270	ENSG00000283706	PRSS50	CT20|TSP50	serine protease 50	protein-coding
160225	chr3	23948651	23949250	+	0	NA	intron (NM_001145425, intron 1 of 7)	intron (NM_001145425, intron 1 of 7)	-2388	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
90673	chr17	1713201	1713550	+	0	NA	TTS (NR_029494).2	TTS (NR_029494).2	612	NR_029494	407004		NR_029494	ENSG00000283824	MIR22	MIRN22|hsa-mir-22|miR-22	microRNA 22	ncRNA
104808	chr17	81802371	81802850	+	0	NA	Intergenic	Intergenic	-1540	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
10490	chr1	66372971	66373650	+	0	NA	3' UTR (NM_001297442, exon 10 of 10)	3' UTR (NM_001297442, exon 10 of 10)	18775	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
206506	chr7	33650151	33650250	+	0	NA	Intergenic	L2c|LINE|L2	-75781	NR_165282	55025		NM_017937	ENSG00000173862	FLJ20712	-	uncharacterized FLJ20712	ncRNA
25724	chr10	9018571	9019730	+	0	NA	Intergenic	Intergenic	121161	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
97037	chr17	42317051	42317880	+	0	NA	intron (NM_001369519, intron 21 of 23)	intron (NM_001369519, intron 21 of 23)	29409	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
74558	chr15	60527321	60527580	+	0	NA	intron (NR_120339, intron 4 of 5)	intron (NR_120339, intron 4 of 5)	48272	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
127324	chr2	39059421	39059830	+	0	NA	intron (NM_001382394, intron 2 of 22)	intron (NM_001382394, intron 2 of 22)	61426	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
3730	chr1	16629601	16629800	+	0	NA	intron (NR_026752, intron 1 of 6)	AluSx1|SINE|Alu	1206	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
230308	chr9	127957751	127958150	+	0	NA	intron (NM_001035254, intron 1 of 10)	AluSz6|SINE|Alu	-7236	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
199554	chr6	118882371	118882530	+	0	NA	intron (NM_001378357, intron 8 of 13)	L1MB8|LINE|L1	-11702	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
175012	chr4	52052401	52052650	+	0	NA	intron (NM_001346103, intron 1 of 8)	intron (NM_001346103, intron 1 of 8)	1221	NM_001346103	132671		NM_145263	ENSG00000163071	SPATA18	Mieap|SPETEX1	spermatogenesis associated 18	protein-coding
118138	chr19	34990601	34990800	+	0	NA	Intergenic	Intergenic	-4027	NM_001320036	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
158664	chr3	5096051	5096350	+	0	NA	Intergenic	CpG	-26092	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
10465	chr1	66331951	66332750	+	0	NA	5' UTR (NM_001037339, exon 1 of 10)	5' UTR (NM_001037339, exon 1 of 10)	242	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
78601	chr15	93141321	93141850	+	0	NA	Intergenic	Intergenic	-52374	NM_020211	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
116286	chr19	17746671	17746830	+	0	NA	promoter-TSS (NR_169219)	promoter-TSS (NR_169219)	-994	NM_001384396	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
166759	chr3	122245571	122245880	+	0	NA	intron (NM_001178065, intron 1 of 6)	intron (NM_001178065, intron 1 of 6)	61398	NM_001178065	846		NM_000388	ENSG00000036828	CASR	CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR	calcium sensing receptor	protein-coding
109104	chr18	79985201	79985400	+	0	NA	intron (NM_001305564, intron 1 of 2)	AluJb|SINE|Alu	3263	NR_131175	10907		NM_006701	ENSG00000141759	TXNL4A	BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD	thioredoxin like 4A	protein-coding
218409	chr8	47459401	47460130	+	0	NA	intron (NM_001352944, intron 5 of 13)	L1PB1|LINE|L1	-194323	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
65035	chr14	39178271	39178950	+	0	NA	intron (NM_002687, intron 6 of 8)	AluJb|SINE|Alu	3356	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
180495	chr5	14212551	14212850	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	69358	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
176357	chr4	88458471	88458780	+	0	NA	intron (NM_016323, intron 1 of 22)	intron (NM_016323, intron 1 of 22)	1506	NM_016323	51191		NM_016323	ENSG00000138646	HERC5	CEB1|CEBP1	HECT and RLD domain containing E3 ubiquitin protein ligase 5	protein-coding
196900	chr6	52310051	52310430	+	0	NA	Intergenic	L1MD2|LINE|L1	-25498	NM_001270472	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
85660	chr16	56226901	56227430	+	0	NA	intron (NM_020988, intron 2 of 8)	(AAG)n|Simple_repeat|Simple_repeat	-18355	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
7016	chr1	31912971	31913550	+	0	NA	intron (NM_001369858, intron 2 of 4)	intron (NM_001369858, intron 2 of 4)	24558	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
167149	chr3	128053771	128054080	+	0	NA	intron (NM_013336, intron 2 of 11)	intron (NM_013336, intron 2 of 11)	1488	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
194374	chr6	32979871	32980200	+	0	NA	exon (NM_005104, exon 11 of 13).3	exon (NM_005104, exon 11 of 13).3	6951	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
231291	chr9	130035951	130036490	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	6969	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
142680	chr20	6074171	6074430	+	0	NA	TTS (NM_017671)	TTS (NM_017671)	-20240	NM_152611	164312		NM_152611	ENSG00000125872	LRRN4	C20orf75|NLRR-4|NLRR4|dJ1056H1.1	leucine rich repeat neuronal 4	protein-coding
227043	chr9	83968801	83969280	+	0	NA	TTS (NR_029605)	TTS (NR_029605)	817	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
152681	chr22	21615321	21616130	+	0	NA	intron (NR_028436, intron 4 of 4)	Tigger17a|DNA|TcMar-Tigger	14297	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
53426	chr12	64826301	64826650	+	0	NA	intron (NM_015279, intron 1 of 11)	intron (NM_015279, intron 1 of 11)	1828	NM_001364838	23329		NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
97814	chr17	44848971	44849200	+	0	NA	TTS (NM_004247)	TTS (NM_004247)	1202	NM_016438	51751		NM_016438	ENSG00000131097	HIGD1B	CLST11240|CLST11240-15	HIG1 hypoxia inducible domain family member 1B	protein-coding
83066	chr16	22347171	22347330	+	0	NA	exon (NM_001802, exon 5 of 5)	exon (NM_001802, exon 5 of 5)	27369	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
44525	chr11	107840371	107841530	+	0	NA	intron (NM_017515, intron 1 of 7)	intron (NM_017515, intron 1 of 7)	17837	NM_017515	54733		NM_017515	ENSG00000110660	SLC35F2	HSNOV1	solute carrier family 35 member F2	protein-coding
79135	chr16	228471	229850	+	0	NA	intron (NM_001330420, intron 1 of 9)	CpG	289	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
148493	chr20	64065251	64066730	+	0	NA	intron (NM_003195, intron 1 of 9)	intron (NM_003195, intron 1 of 9)	2792	NM_003195	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
158763	chr3	9393471	9394600	+	0	NA	intron (NR_027007, intron 1 of 2)	intron (NR_027007, intron 1 of 2)	2588	NR_132781	440944		NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
183282	chr5	76527521	76528150	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-19574	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
9144	chr1	45508301	45509180	+	0	NA	intron (NM_015506, intron 3 of 3)	intron (NM_015506, intron 3 of 3)	8440	NM_001330540	25974		NM_015506	ENSG00000132763	MMACHC	cblC	metabolism of cobalamin associated C	protein-coding
234946	chrX	38803551	38804600	+	0	NA	promoter-TSS (NR_046706)	promoter-TSS (NR_046706)	-192	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
110322	chr19	1858571	1859400	+	0	NA	intron (NM_031918, intron 1 of 1)	intron (NM_031918, intron 1 of 1)	4594	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
196650	chr6	44298701	44299300	+	0	NA	3' UTR (NM_020745, exon 22 of 22)	3' UTR (NM_020745, exon 22 of 22)	-1302	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
85695	chr16	56517371	56517530	+	0	NA	intron (NR_165297, intron 1 of 16)	L2a|LINE|L2	2574	NR_165297	583		NM_031885	ENSG00000125124	BBS2	BBS|RP74	Bardet-Biedl syndrome 2	protein-coding
213841	chr7	141739451	141739550	+	0	NA	intron (NM_001256511, intron 2 of 6)	intron (NM_001256511, intron 2 of 6)	893	NM_001256510	6742		NM_003143	ENSG00000106028	SSBP1	Mt-SSB|OPA13|SOSS-B1|SSBP|mtSSB	single stranded DNA binding protein 1	protein-coding
183913	chr5	87391851	87392300	+	0	NA	TTS (NM_002890)	TTS (NM_002890)	20829	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
142569	chr20	5298121	5298480	+	0	NA	TTS (NM_144773)	TTS (NM_144773)	18654	NM_144773	128674		NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
13654	chr1	116544901	116545300	+	0	NA	intron (NR_026665, intron 1 of 5)	L2|LINE|L2	15011	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
167092	chr3	127560201	127560480	+	0	NA	Intergenic	Intergenic	14991	NR_106883	102466199		NR_106883	ENSG00000275067	MIR6825	hsa-mir-6825	microRNA 6825	ncRNA
176851	chr4	102604501	102604780	+	0	NA	intron (NM_001382625, intron 17 of 24)	L1ME5|LINE|L1	-102154	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
102696	chr17	76137921	76138300	+	0	NA	exon (NM_001454, exon 3 of 3)	exon (NM_001454, exon 3 of 3)	-2446	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
53648	chr12	68290071	68290530	+	0	NA	Intergenic	Intergenic	-36696	NM_020525	50616		NM_020525	ENSG00000127318	IL22	IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18	interleukin 22	protein-coding
61767	chr13	74289901	74290700	+	0	NA	Intergenic	Intergenic	58856	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
96565	chr17	40448221	40448750	+	0	NA	intron (NM_001552, intron 1 of 3)	intron (NM_001552, intron 1 of 3)	5035	NM_001552	3487		NM_001552	ENSG00000141753	IGFBP4	BP-4|HT29-IGFBP|IBP4|IGFBP-4	insulin like growth factor binding protein 4	protein-coding
202190	chr6	156269801	156270200	+	0	NA	Intergenic	L2b|LINE|L2	-108750	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
191725	chr6	13694621	13695980	+	0	NA	intron (NM_005493, intron 2 of 13)	intron (NM_005493, intron 2 of 13)	16535	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
124643	chr2	1854901	1855100	+	0	NA	intron (NM_001329845, intron 18 of 24)	intron (NM_001329845, intron 18 of 24)	-110485	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
159697	chr3	15598871	15599100	+	0	NA	intron (NR_104315, intron 2 of 14)	L2c|LINE|L2	-2367	NM_001281723	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
119617	chr19	40776551	40779700	+	0	NA	promoter-TSS (NR_037791)	promoter-TSS (NR_037791)	-94	NR_037791	100529264		NR_037791		RAB4B-EGLN2	EGLN2|EIT-6|EIT6|HIF-PH1|HPH-1|HPH-3|PHD1|RERT-lncRNA	RAB4B-EGLN2 readthrough (NMD candidate)	ncRNA
146414	chr20	49517721	49517980	+	0	NA	intron (NM_000961, intron 6 of 9)	MLT1K|LTR|ERVL-MaLR	-35182	NM_004975	3745		NM_004975	ENSG00000158445	KCNB1	DEE26|DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
19868	chr1	183477351	183477650	+	0	NA	intron (NM_001174061, intron 1 of 21)	intron (NM_001174061, intron 1 of 21)	5001	NM_001375585	9887		NM_014837	ENSG00000116698	SMG7	C1orf16|EST1C|SGA56M	SMG7 nonsense mediated mRNA decay factor	protein-coding
27803	chr10	35643221	35644200	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2276	NM_031866	8325		NM_031866	ENSG00000177283	FZD8	FZ-8|hFZ8	frizzled class receptor 8	protein-coding
116764	chr19	18493271	18493430	+	0	NA	intron (NM_006532, intron 1 of 11)	G-rich|Low_complexity|Low_complexity	28720	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
106211	chr18	11751801	11752000	+	0	NA	promoter-TSS (NM_001369387)	promoter-TSS (NM_001369387)	-185	NM_001369387	2774		NM_002071	ENSG00000141404	GNAL	DYT25|HG1O	G protein subunit alpha L	protein-coding
203758	chr7	1174271	1174630	+	0	NA	Intergenic	Intergenic	13665	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
28712	chr10	61765571	61765930	+	0	NA	intron (NM_173554, intron 6 of 6)	intron (NM_173554, intron 6 of 6)	102789	NM_173554	219621		NM_173554	ENSG00000183346	CABCOCO1	ARIEL|C10orf107	ciliary associated calcium binding coiled-coil 1	protein-coding
117419	chr19	19633551	19633950	+	0	NA	intron (NM_001288998, intron 18 of 19)	GA-rich|Low_complexity|Low_complexity	-5530	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
157499	chr22	45327471	45327630	+	0	NA	intron (NM_001349915, intron 3 of 7)	L2a|LINE|L2	9107	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
147769	chr20	62509771	62509930	+	0	NA	Intergenic	Intergenic	-33855	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
174127	chr4	36222471	36223000	+	0	NA	intron (NR_146894, intron 2 of 32)	L1ME3Cz|LINE|L1	21204	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
213347	chr7	135559751	135559850	+	0	NA	intron (NM_001329434, intron 1 of 42)	AluSx1|SINE|Alu	1883	NM_015135	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
144716	chr20	36545801	36546300	+	0	NA	intron (NM_181526, intron 2 of 2)	intron (NM_181526, intron 2 of 2)	4531	NM_181526	10398		NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MMIHS4|MRLC1|MYRL2	myosin light chain 9	protein-coding
233271	chr9	137297621	137298450	+	0	NA	Intergenic	Intergenic	4236	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
96590	chr17	40520821	40521080	+	0	NA	Intergenic	Intergenic	-19327	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
114466	chr19	12731051	12731800	+	0	NA	non-coding (NR_138095, exon 2 of 3)	non-coding (NR_138095, exon 2 of 3)	3259	NM_001329738	79002		NM_024038	ENSG00000123144	TRIR	C19orf43|TERCIR|fSAP18	telomerase RNA component interacting RNase	protein-coding
195853	chr6	41456451	41456630	+	0	NA	Intergenic	Intergenic	-45904	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
19161	chr1	171655451	171655830	+	0	NA	Intergenic	Intergenic	-2952	NM_000261	4653		NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR	myocilin	protein-coding
213223	chr7	133434271	133434450	+	0	NA	intron (NM_021807, intron 7 of 17)	intron (NM_021807, intron 7 of 17)	143479	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
88143	chr16	81628471	81628630	+	0	NA	intron (NM_030629, intron 3 of 20)	MIRb|SINE|MIR	17202	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
13215	chr1	112655321	112655950	+	0	NA	intron (NM_006135, intron 5 of 9)	AluSx1|SINE|Alu	-18677	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
49036	chr12	14377701	14378100	+	0	NA	intron (NM_001286515, intron 1 of 12)	AluSx1|SINE|Alu	-7381	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
14104	chr1	120921471	120921630	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-7436	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
204238	chr7	2546851	2547680	+	0	NA	intron (NM_152743, intron 3 of 13)	intron (NM_152743, intron 3 of 13)	8259	NR_146879	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
116663	chr19	18385401	18385600	+	0	NA	promoter-TSS (NM_004864)	promoter-TSS (NM_004864)	-658	NM_004864	9518		NM_004864	ENSG00000130513	GDF15	GDF-15|HG|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB	growth differentiation factor 15	protein-coding
3312	chr1	15404071	15404780	+	0	NA	Intergenic	AluJo|SINE|Alu	-5463	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
79514	chr16	801051	801150	+	0	NA	promoter-TSS (NM_016541)	promoter-TSS (NM_016541)	-366	NM_016541	51764		NM_016541	ENSG00000127588	GNG13	G(gamma)13|HG3J|h2-35	G protein subunit gamma 13	protein-coding
137090	chr2	190930051	190930430	+	0	NA	intron (NM_014905, intron 12 of 17)	AluJo|SINE|Alu	49419	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
124744	chr2	6897071	6897680	+	0	NA	3' UTR (NM_080657, exon 6 of 6)	3' UTR (NM_080657, exon 6 of 6)	19598	NM_080657	91543		NM_080657	ENSG00000134321	RSAD2	SAND|cig33|cig5|vig1	radical S-adenosyl methionine domain containing 2	protein-coding
176965	chr4	103200521	103201050	+	0	NA	Intergenic	L2a|LINE|L2	-2442	NM_001813	1062		NM_001813	ENSG00000138778	CENPE	CENP-E|KIF10|MCPH13|PPP1R61	centromere protein E	protein-coding
36395	chr11	4064051	4064550	+	0	NA	intron (NR_168438, intron 5 of 9)	intron (NR_168438, intron 5 of 9)	-30385	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
235637	chrX	48477551	48477900	+	0	NA	intron (NM_177439, intron 2 of 13)	intron (NM_177439, intron 2 of 13)	1526	NM_177439	24140		NM_012280	ENSG00000068438	FTSJ1	CDLIV|JM23|MRX44|MRX9|SPB1|TRMT7|XLID9	FtsJ RNA 2'-O-methyltransferase 1	protein-coding
177270	chr4	109441501	109441700	+	0	NA	intron (NM_001318085, intron 1 of 23)	AluJb|SINE|Alu	-7783	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
105639	chr18	906471	907050	+	0	NA	intron (NM_001117, intron 1 of 3)	CpG	1394	NM_001117	116		NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
58938	chr13	19770021	19770680	+	0	NA	intron (NM_001354909, intron 2 of 8)	L1ME2|LINE|L1	12595	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
22979	chr1	226082851	226084050	+	0	NA	promoter-TSS (NR_146920)	promoter-TSS (NR_146920)	-125	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
70431	chr14	102037121	102037580	+	0	NA	intron (NM_001376, intron 57 of 77)	AluSg|SINE|Alu	49694	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
119789	chr19	41321171	41321550	+	0	NA	intron (NM_001346100, intron 4 of 4)	intron (NM_001346100, intron 4 of 4)	10883	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
52687	chr12	56471001	56471900	+	0	NA	3' UTR (NM_001280798, exon 15 of 15)	3' UTR (NM_001280798, exon 15 of 15)	2872	NM_207344	283377		NM_207344	ENSG00000176422	SPRYD4	-	SPRY domain containing 4	protein-coding
169256	chr3	157161971	157162330	+	0	NA	Intergenic	Intergenic	-2003	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
98716	chr17	47978071	47978730	+	0	NA	intron (NM_176096, intron 10 of 13)	intron (NM_176096, intron 10 of 13)	7287	NM_001278198	80279		NM_025197	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding
155842	chr22	39446751	39447650	+	0	NA	Intergenic	Intergenic	-9812	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
58289	chr12	130754551	130754650	+	0	NA	Intergenic	(AGCAGG)n|Simple_repeat|Simple_repeat	-38295	NM_001351233	23504		NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
87311	chr16	70184971	70185680	+	0	NA	intron (NM_173619, intron 11 of 12)	intron (NM_173619, intron 11 of 12)	-2997	NR_135173	105371328		NR_135173		LOC105371328	-	uncharacterized LOC105371328	ncRNA
36360	chr11	3938951	3939480	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	83153	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
133455	chr2	119698451	119698550	+	0	NA	intron (NR_148341, intron 8 of 16)	intron (NR_148341, intron 8 of 16)	19299	NM_030577	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
81870	chr16	11666821	11667300	+	0	NA	Intergenic	FRAM|SINE|Alu	-1395	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
6798	chr1	30825521	30825930	+	0	NA	intron (NR_146732, intron 1 of 2)	intron (NR_146732, intron 1 of 2)	1073	NR_146732	105378622		NR_146732	ENSG00000223382	LINC01778	-	long intergenic non-protein coding RNA 1778	ncRNA
102940	chr17	76661271	76661430	+	0	NA	Intergenic	L1MC4|LINE|L1	-10578	NR_130916	105274304		NR_130916	ENSG00000261335	LOC105274304	-	uncharacterized LOC105274304	ncRNA
227376	chr9	89496601	89497500	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	1063	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
126446	chr2	28228551	28228650	+	0	NA	intron (NM_199193, intron 8 of 13)	intron (NM_199193, intron 8 of 13)	-21639	NR_120504	100505736		NR_120504		LOC100505736	-	uncharacterized LOC100505736	ncRNA
20705	chr1	200671201	200671400	+	0	NA	intron (NR_110787, intron 1 of 2)	Arthur1|DNA|hAT-Tip100	-1302	NM_001349803	83479		NM_031306	ENSG00000118197	DDX59	OFD5|ZNHIT5	DEAD-box helicase 59	protein-coding
62879	chr13	110658151	110658750	+	0	NA	intron (NM_001352252, intron 10 of 15)	L1MB2|LINE|L1	42822	NM_001242881	55739		NM_018210	ENSG00000213995	NAXD	CARKD|LP3298|PEBEL2	NAD(P)HX dehydratase	protein-coding
44899	chr11	114880901	114881100	+	0	NA	Intergenic	Intergenic	202473	NM_182495	120406		NM_182495	ENSG00000204361	NXPE2	FAM55B	neurexophilin and PC-esterase domain family member 2	protein-coding
234979	chrX	39462921	39463180	+	0	NA	Intergenic	Intergenic	-71276	NR_110385	101927449		NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
148215	chr20	63575921	63576700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2071	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
135563	chr2	165443551	165443650	+	0	NA	Intergenic	Intergenic	-26098	NM_001172173	80034		NM_024969	ENSG00000178662	CSRNP3	FAM130A2|MBU1|PPP1R73|TAIP-2|TAIP2	cysteine and serine rich nuclear protein 3	protein-coding
104977	chr17	81988421	81988680	+	0	NA	intron (NR_045351, intron 3 of 14)	intron (NR_045351, intron 3 of 14)	10921	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
177543	chr4	118968071	118968330	+	0	NA	intron (NM_133477, intron 1 of 4)	intron (NM_133477, intron 1 of 4)	79346	NM_133477	171024		NM_133477	ENSG00000172403	SYNPO2	SYISL	synaptopodin 2	protein-coding
48341	chr12	9283451	9284800	+	0	NA	intron (NR_024374, intron 1 of 21)	intron (NR_024374, intron 1 of 21)	468	NR_024374	642846		NR_024374		LOC642846	-	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like	ncRNA
121571	chr19	47268671	47269280	+	0	NA	intron (NM_015603, intron 8 of 11)	AluJb|SINE|Alu	-5448	NR_037675	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
2788	chr1	10898521	10898780	+	0	NA	Intergenic	Intergenic	68037	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
193872	chr6	31575151	31576050	+	0	NA	promoter-TSS (NM_000594).6	promoter-TSS (NM_000594).6	35	NM_000594	7124		NM_000594	ENSG00000232810	TNF	DIF|TNF-alpha|TNFA|TNFSF2|TNLG1F	tumor necrosis factor	protein-coding
216537	chr8	21478801	21479280	+	0	NA	Intergenic	Intergenic	180801	NR_104677	101929172		NR_104677	ENSG00000254334	LINC03093	-	long intergenic non-protein coding RNA 3093	ncRNA
179150	chr4	169659071	169659230	+	0	NA	promoter-TSS (NM_001243374)	promoter-TSS (NM_001243374)	-912	NM_001243374	1182		NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3|NEDHYBA|NEDSBA	chloride voltage-gated channel 3	protein-coding
39175	chr11	57421751	57422850	+	0	NA	intron (NM_199329, intron 5 of 13)	MER113|DNA|hAT-Charlie	4821	NM_001278201	29015		NM_014096	ENSG00000134802	SLC43A3	EEG1|ENBT1|FOAP-13|PRO1659|SEEEG-1	solute carrier family 43 member 3	protein-coding
71450	chr14	105709271	105710000	+	0	NA	Intergenic	Intergenic	-36828	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
180982	chr5	35794071	35794530	+	0	NA	intron (NM_024867, intron 32 of 36)	intron (NM_024867, intron 32 of 36)	-62591	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
167176	chr3	128112271	128113100	+	0	NA	intron (NM_003707, intron 3 of 10)	intron (NM_003707, intron 3 of 10)	11127	NM_001319084	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
144133	chr20	34012871	34013230	+	0	NA	intron (NM_016732, intron 1 of 9)	MER47A|DNA|TcMar-Tigger	-18683	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
141285	chr2	240158571	240159030	+	0	NA	Intergenic	Intergenic	-18142	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
109	chr1	485901	486300	+	0	NA	Intergenic	AluSg|SINE|Alu	9345	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
42589	chr11	72025171	72026430	+	0	NA	intron (NM_001286561, intron 5 of 26)	intron (NM_001286561, intron 5 of 26)	11509	NR_104178	100128494		NR_104178	ENSG00000251143	LOC100128494	-	uncharacterized LOC100128494	ncRNA
32517	chr10	102783571	102783730	+	0	NA	intron (NM_017787, intron 1 of 3)	MER20|DNA|hAT-Charlie	7429	NM_017787	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
28224	chr10	45373121	45373430	+	0	NA	promoter-TSS (NM_000698)	promoter-TSS (NM_000698)	-891	NM_001256154	240		NM_000698	ENSG00000012779	ALOX5	5-LO|5-LOX|5LPG|LOG5	arachidonate 5-lipoxygenase	protein-coding
33708	chr10	121524071	121524230	+	0	NA	intron (NM_022970, intron 6 of 17)	intron (NM_022970, intron 6 of 17)	7164	NM_001320654	2263		NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
180213	chr5	1513671	1514300	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	-3129	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
75317	chr15	65302771	65302930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1827	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
76144	chr15	72615501	72616180	+	0	NA	intron (NR_135685, intron 2 of 2)	L1M1|LINE|L1	21115	NR_135684	102723640		NR_135684	ENSG00000259783	LINC02259	-	long intergenic non-protein coding RNA 2259	ncRNA
206381	chr7	30702251	30702880	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-2462	NM_001202481	1395		NM_001883	ENSG00000106113	CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
208899	chr7	73853451	73853750	+	0	NA	Intergenic	AluSx|SINE|Alu	-7559	NM_182504	135886		NM_182504	ENSG00000175877	TMEM270	WBSCR28	transmembrane protein 270	protein-coding
138897	chr2	217988271	217988830	+	0	NA	intron (NR_135524, intron 3 of 3)	intron (NR_135524, intron 3 of 3)	9843	NR_135524	105373878		NR_135524	ENSG00000223923	TNS1-AS1	-	TNS1 antisense RNA 1	ncRNA
151005	chr21	44425571	44425930	+	0	NA	promoter-TSS (NR_109964)	promoter-TSS (NR_109964)	-187	NR_109964	101928607		NR_109964		TRPM2-AS	TRPM2-AS1	TRPM2 antisense RNA	ncRNA
154685	chr22	36373201	36373900	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	14417	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
105701	chr18	2683101	2684080	+	0	NA	intron (NM_015295, intron 5 of 47)	L1MD|LINE|L1	27864	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
174292	chr4	38422771	38423150	+	0	NA	intron (NR_110951, intron 7 of 7)	intron (NR_110951, intron 7 of 7)	56046	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
102668	chr17	76087451	76087950	+	0	NA	exon (NM_015219, exon 11 of 18)	exon (NM_015219, exon 11 of 18)	8518	NM_180990	353174		NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding
138436	chr2	206062851	206063150	+	0	NA	exon (NM_017759, exon 3 of 11)	exon (NM_017759, exon 3 of 11)	23174	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
147835	chr20	62752401	62752600	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	24356	NR_046224	100652730		NR_046224	ENSG00000228705	LINC00659	-	long intergenic non-protein coding RNA 659	ncRNA
60482	chr13	41225121	41225380	+	0	NA	intron (NM_004294, intron 8 of 9)	intron (NM_004294, intron 8 of 9)	-30681	NM_032138	84078		NM_032138	ENSG00000120696	KBTBD7	-	kelch repeat and BTB domain containing 7	protein-coding
47113	chr12	676101	676300	+	0	NA	Intergenic	AluYc|SINE|Alu	-12755	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
187681	chr5	143302871	143303030	+	0	NA	intron (NM_001204265, intron 4 of 6)	intron (NM_001204265, intron 4 of 6)	100333	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
56504	chr12	116282571	116282930	+	0	NA	Intergenic	Intergenic	-5057	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
134072	chr2	131513951	131514880	+	0	NA	intron (NR_026922, intron 10 of 17)	intron (NR_026922, intron 10 of 17)	-13260	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
163925	chr3	52687171	52687330	+	0	NA	exon (NM_206825, exon 3 of 15)	exon (NM_206825, exon 3 of 15)	1218	NM_014366	26354		NM_014366	ENSG00000163938	GNL3	C77032|E2IG3|NNP47|NS|Nug1	G protein nucleolar 3	protein-coding
154418	chr22	35336771	35337350	+	0	NA	promoter-TSS (NR_106717)	promoter-TSS (NR_106717)	-261	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
114498	chr19	12773221	12774050	+	0	NA	intron (NM_013312, intron 3 of 22)	L2a|LINE|L2	1917	NM_001100176	29911		NM_013312	ENSG00000095066	HOOK2	HK2	hook microtubule tethering protein 2	protein-coding
185391	chr5	128089571	128090330	+	0	NA	intron (NR_046207, intron 1 of 26)	intron (NR_046207, intron 1 of 26)	6184	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
184830	chr5	111315351	111315650	+	0	NA	intron (NM_001744, intron 1 of 10)	MIRb|SINE|MIR	91116	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
140	chr1	519071	519230	+	0	NA	Intergenic	Intergenic	-23705	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
224729	chr9	21611621	21612480	+	0	NA	Intergenic	Intergenic	-52252	NR_152878	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
93241	chr17	17863201	17864080	+	0	NA	intron (NM_001082968, intron 10 of 14)	AluJr4|SINE|Alu	-26629	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
225512	chr9	35697871	35698200	+	0	NA	intron (NM_006289, intron 56 of 56)	intron (NM_006289, intron 56 of 56)	-7979	NM_001301227	7169		NM_003289	ENSG00000198467	TPM2	AMCD1|CMYP23|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB	tropomyosin 2	protein-coding
57155	chr12	121295271	121295630	+	0	NA	intron (NM_172215, intron 1 of 15)	intron (NM_172215, intron 1 of 15)	1259	NM_001270485	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
33342	chr10	116848201	116848600	+	0	NA	intron (NM_001330164, intron 1 of 12)	intron (NM_001330164, intron 1 of 12)	-1099	NM_001242699	387712		NM_001242699	ENSG00000188316	ENO4	C10orf134|ENOS	enolase 4	protein-coding
67903	chr14	74575871	74576280	+	0	NA	intron (NM_000428, intron 3 of 35)	intron (NM_000428, intron 3 of 35)	36162	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
107078	chr18	34976621	34978600	+	0	NA	promoter-TSS (NM_001143827)	promoter-TSS (NM_001143827)	682	NM_001143826	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
211151	chr7	102568871	102569350	+	0	NA	intron (NM_001097615, intron 2 of 8)	intron (NM_001097615, intron 2 of 8)	3511	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
221104	chr8	117929201	117929400	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	-8387	NR_145799	109623457		NR_145799		SNORD168	-	small nucleolar RNA, C/D box 168	snoRNA
77573	chr15	84987851	84988550	+	0	NA	intron (NM_173454, intron 1 of 20)	MIRb|SINE|MIR	6226	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
219692	chr8	80787351	80787450	+	0	NA	intron (NM_001367783, intron 2 of 8)	intron (NM_001367783, intron 2 of 8)	87068	NM_001367783	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
133265	chr2	113439701	113439900	+	0	NA	intron (NM_001330340, intron 2 of 16)	intron (NM_001330340, intron 2 of 16)	2109	NR_138473	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
207910	chr7	50608051	50608630	+	0	NA	intron (NM_001371008, intron 10 of 15)	L1MEg|LINE|L1	-42935	NM_001082971	1644		NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
168007	chr3	136838951	136839250	+	0	NA	intron (NM_025246, intron 1 of 1)	intron (NM_025246, intron 1 of 1)	19974	NM_025246	80723		NM_025246	ENSG00000168917	SLC35G2	TMEM22	solute carrier family 35 member G2	protein-coding
202355	chr6	157669521	157669980	+	0	NA	intron (NM_153746, intron 8 of 8)	intron (NM_153746, intron 8 of 8)	140618	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
200053	chr6	129875771	129876130	+	0	NA	Intergenic	Intergenic	-14635	NM_001010876	253582		NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
90328	chr17	1160951	1161130	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	18941	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
198211	chr6	97497721	97498000	+	0	NA	intron (NR_110757, intron 1 of 4)	intron (NR_110757, intron 1 of 4)	192274	NR_110757	101927314		NR_110757	ENSG00000271860	LOC101927314	-	uncharacterized LOC101927314	ncRNA
1880	chr1	6429801	6430400	+	0	NA	promoter-TSS (NR_036218)	promoter-TSS (NR_036218)	-204	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
169466	chr3	168213921	168214350	+	0	NA	Intergenic	Intergenic	-35387	NR_021485	93556		NR_021485		EGFEM1P	C3orf50|NCRNA00259	EGF like and EMI domain containing 1, pseudogene	pseudo
235026	chrX	40015671	40015830	+	0	NA	Intergenic	Intergenic	82208	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
54005	chr12	75458271	75458630	+	0	NA	Intergenic	MER11C|LTR|ERVK	-22305	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
164617	chr3	66377701	66378580	+	0	NA	TTS (NM_001377349)	TTS (NM_001377349)	27627	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
10668	chr1	71046021	71046630	+	0	NA	promoter-TSS (NR_038420)	promoter-TSS (NR_038420)	-181	NR_038420	100132618		NR_038420		ZRANB2-AS1	-	ZRANB2 antisense RNA 1	ncRNA
153342	chr22	24409621	24410680	+	0	NA	intron (NM_001254732, intron 13 of 14)	FAM|SINE|Alu	-13447	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
81754	chr16	11407501	11408230	+	0	NA	intron (NM_001370704, intron 46 of 66)	intron (NM_001370704, intron 46 of 66)	-57395	NR_110907	101927131		NR_110907	ENSG00000262999	LOC101927131	-	uncharacterized LOC101927131	ncRNA
191281	chr6	6546501	6547480	+	0	NA	intron (NR_026970, intron 3 of 7)	CpG	-41730	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
58912	chr13	19713751	19713850	+	0	NA	intron (NM_001354909, intron 6 of 8)	Charlie1a|DNA|hAT-Charlie	69145	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
1423	chr1	2581371	2581930	+	0	NA	non-coding (NR_121638, exon 2 of 4)	non-coding (NR_121638, exon 2 of 4)	-4873	NR_036637	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
28738	chr10	61964321	61964850	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	62886	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
113736	chr19	10482501	10482700	+	0	NA	Intergenic	AluY|SINE|Alu	20171	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
209820	chr7	88169751	88169950	+	0	NA	intron (NM_021721, intron 25 of 27)	intron (NM_021721, intron 25 of 27)	-46810	NR_120517	102723885		NR_120517		SRI-AS1	-	SRI antisense RNA 1	ncRNA
197516	chr6	75780571	75780730	+	0	NA	intron (NM_001368139, intron 2 of 9)	intron (NM_001368139, intron 2 of 9)	31411	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
232178	chr9	134178651	134179480	+	0	NA	Intergenic	Intergenic	-14501	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
174387	chr4	39034951	39035250	+	0	NA	Intergenic	AluJr|SINE|Alu	-2691	NM_001303228	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
194569	chr6	33412401	33412930	+	0	NA	intron (NM_024165, intron 3 of 14).2	intron (NM_024165, intron 3 of 14).2	1651	NM_002636	5252		NM_002636	ENSG00000112511	PHF1	MTF2L2|PCL1|PHF2|TDRD19C|hPHF1	PHD finger protein 1	protein-coding
188074	chr5	150130751	150130850	+	0	NA	intron (NM_001355016, intron 7 of 21)	intron (NM_001355016, intron 7 of 21)	-17428	NM_005211	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
85105	chr16	33951051	33951350	+	0	NA	Intergenic	Intergenic	181823	NR_130772	104644205		NR_130771		ENPP7P13	DUNQU1	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13	pseudo
92013	chr17	7463251	7463550	+	0	NA	exon (NM_001128833, exon 4 of 4).2	exon (NM_001128833, exon 4 of 4).2	16231	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
197831	chr6	87915151	87915250	+	0	NA	Intergenic	MIR3|SINE|MIR	130340	NR_110869	101928911		NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
212449	chr7	128409251	128410830	+	0	NA	promoter-TSS (NM_001304521)	promoter-TSS (NM_001304521)	-58	NM_183243	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
164789	chr3	69281951	69282650	+	0	NA	intron (NM_015123, intron 5 of 22)	intron (NM_015123, intron 5 of 22)	103788	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
23671	chr1	231337221	231339180	+	0	NA	promoter-TSS (NM_001261462)	promoter-TSS (NM_001261462)	-93	NM_001010984	83932		NM_032018	ENSG00000010072	SPRTN	C1orf124|DVC1|PRO4323|spartan	SprT-like N-terminal domain	protein-coding
114256	chr19	11549601	11549800	+	0	NA	exon (NM_001308342, exon 8 of 8)	exon (NM_001308342, exon 8 of 8)	5767	NM_001363673	84337		NM_032377	ENSG00000130165	ELOF1	ELF1	elongation factor 1	protein-coding
10377	chr1	64962451	64963380	+	0	NA	intron (NM_001321853, intron 2 of 26)	AluSz|SINE|Alu	3634	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
78898	chr15	101106701	101106900	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	145248	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
181520	chr5	43039351	43039800	+	0	NA	exon (NM_001014279, exon 1 of 1)	exon (NM_001014279, exon 1 of 1)	744	NM_001014279	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
46394	chr11	126307601	126307950	+	0	NA	intron (NM_014026, intron 2 of 5)	MIR|SINE|MIR	3715	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
60153	chr13	39957871	39958700	+	0	NA	Intergenic	Intergenic	-223524	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
85498	chr16	50752471	50752900	+	0	NA	intron (NR_166071, intron 4 of 16)	L1MB4|LINE|L1	10270	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
50905	chr12	49290351	49291780	+	0	NA	Intergenic	AluY|SINE|Alu	-4082	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
223985	chr9	2047121	2047780	+	0	NA	exon (NM_001289397, exon 5 of 33)	exon (NM_001289397, exon 5 of 33)	25505	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
191000	chr6	3063251	3064600	+	0	NA	promoter-TSS (NM_003804)	promoter-TSS (NM_003804)	-42	NM_001317061	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
6107	chr1	27332501	27333530	+	0	NA	intron (NR_037576, intron 4 of 6)	intron (NR_037576, intron 4 of 6)	-9007	NM_032872	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
142374	chr20	3801171	3801330	+	0	NA	intron (NM_004358, intron 7 of 15)	intron (NM_004358, intron 7 of 15)	1188	NM_001287524	994		NM_004358	ENSG00000101224	CDC25B	-	cell division cycle 25B	protein-coding
193353	chr6	30259371	30260330	+	0	NA	intron (NR_027822, intron 1 of 6)	CpG	288	NR_027822	3139		NR_027822	ENSG00000291097	HLA-L	HLA-92|HLA92|HLAL	major histocompatibility complex, class I, L (pseudogene)	pseudo
194680	chr6	33678071	33678430	+	0	NA	intron (NM_002224, intron 28 of 57)	intron (NM_002224, intron 28 of 57)	-19878	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
186732	chr5	139290401	139290750	+	0	NA	intron (NM_001282278, intron 4 of 16)	AluJb|SINE|Alu	-3165	NM_018834	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
215847	chr8	7147471	7147730	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	80588	NR_168401	101928095		NR_168401		LOC101928095	-	uncharacterized LOC101928095	ncRNA
78191	chr15	90565271	90566030	+	0	NA	intron (NM_001042574, intron 2 of 14)	Tigger1|DNA|TcMar-Tigger	35727	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
86362	chr16	66546951	66547530	+	0	NA	intron (NM_001271935, intron 2 of 7)	intron (NM_001271935, intron 2 of 7)	2882	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
28569	chr10	50723821	50724080	+	0	NA	Intergenic	L1M8|LINE|L1	-15986	NM_001321957	653308		NM_001079516	ENSG00000204147	ASAH2B	ASAH2C|ASAH2L|bA449O16.3|bA98I6.3	N-acylsphingosine amidohydrolase 2B	protein-coding
170889	chr3	193599471	193599630	+	0	NA	intron (NM_130832, intron 1 of 28)	intron (NM_130832, intron 1 of 28)	6342	NM_001354664	4976		NM_015560	ENSG00000198836	OPA1	BERHS|MGM1|MTDPS14|NPG|NTG|largeG	OPA1 mitochondrial dynamin like GTPase	protein-coding
31872	chr10	100180071	100180230	+	0	NA	intron (NR_144755, intron 2 of 11)	intron (NR_144755, intron 2 of 11)	5879	NM_001100626	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
236625	chrX	74568401	74568600	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	46124	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
52779	chr12	56690151	56690800	+	0	NA	Intergenic	AluJo|SINE|Alu	-2067	NM_001282604	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
97210	chr17	42760001	42760300	+	0	NA	intron (NR_024462, intron 3 of 5)	MIRc|SINE|MIR	-1077	NM_005854	10266		NM_005854	ENSG00000131477	RAMP2	-	receptor activity modifying protein 2	protein-coding
125411	chr2	11743721	11744580	+	0	NA	intron (NM_001261427, intron 2 of 20)	intron (NM_001261427, intron 2 of 20)	-2482	NM_001349206	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
39469	chr11	60985821	60987030	+	0	NA	intron (NM_006725, intron 1 of 12)	MIRb|SINE|MIR	14745	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
156532	chr22	41422071	41422430	+	0	NA	Intergenic	AluSq2|SINE|Alu	24551	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
93637	chr17	19174371	19174780	+	0	NA	Intergenic	Intergenic	-11951	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
231882	chr9	133020601	133021000	+	0	NA	TTS (NR_132980).3	TTS (NR_132980).3	370	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
141721	chr2	241855651	241855750	+	0	NA	intron (NM_005018, intron 1 of 4)	intron (NM_005018, intron 1 of 4)	3194	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
49174	chr12	15201071	15201430	+	0	NA	intron (NM_032918, intron 2 of 4)	intron (NM_032918, intron 2 of 4)	20167	NM_001190726	85004		NM_032918	ENSG00000134533	RERG	-	RAS like estrogen regulated growth inhibitor	protein-coding
76950	chr15	78104651	78104750	+	0	NA	TTS (NM_001271888)	TTS (NM_001271888)	12115	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
210445	chr7	100104221	100104480	+	0	NA	intron (NM_004722, intron 7 of 14)	AluJo|SINE|Alu	2702	NM_001363671	9179		NM_004722	ENSG00000221838	AP4M1	CPSQ3|MU-4|MU-ARP2|SPG50	adaptor related protein complex 4 subunit mu 1	protein-coding
189228	chr5	171912201	171912630	+	0	NA	intron (NM_033645, intron 1 of 11)	intron (NM_033645, intron 1 of 11)	94223	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
178604	chr4	152010621	152011080	+	0	NA	Intergenic	Intergenic	-89903	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
181377	chr5	40649421	40650280	+	0	NA	Intergenic	MER21-int|LTR|ERVL	-30065	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
179395	chr4	183663271	183663430	+	0	NA	intron (NM_021942, intron 1 of 29)	AluY|SINE|Alu	4057	NM_021942	60684		NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S|LGMDR18	trafficking protein particle complex subunit 11	protein-coding
18883	chr1	168177571	168177900	+	0	NA	Intergenic	AluJr|SINE|Alu	-1227	NM_152902	261726		NM_152902	ENSG00000143155	TIPRL	TIP|TIP41|TIPRL1	TOR signaling pathway regulator	protein-coding
188938	chr5	160470621	160471130	+	0	NA	intron (NR_132748, intron 1 of 1)	intron (NR_132748, intron 1 of 1)	2624	NR_132748	107075116		NR_132748	ENSG00000253522	MIR3142HG	-	MIR3142 host gene	ncRNA
238812	chrX	154406551	154406880	+	0	NA	intron (NM_001009934, intron 1 of 7)	FLAM_C|SINE|Alu	2539	NM_001303620	1774		NM_006730	ENSG00000013563	DNASE1L1	DNAS1L1|DNASEX|DNL1L|G4.8|XIB	deoxyribonuclease 1 like 1	protein-coding
151720	chr22	17734101	17734550	+	0	NA	3' UTR (NM_001244570, exon 4 of 4)	3' UTR (NM_001244570, exon 4 of 4)	27667	NM_001270733	23786		NM_015367	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2 like 13	protein-coding
172885	chr4	3441221	3441680	+	0	NA	promoter-TSS (NM_001297439)	promoter-TSS (NM_001297439)	-518	NM_001528	3083		NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
178954	chr4	159116421	159117180	+	0	NA	intron (NM_001351724, intron 1 of 30)	L1PA10|LINE|L1	-12005	NR_039963	100616303		NR_039963	ENSG00000283379	MIR3688-2	mir-3688-2	microRNA 3688-2	ncRNA
221565	chr8	125110621	125111030	+	0	NA	intron (NR_146191, intron 3 of 8)	intron (NR_146191, intron 3 of 8)	18965	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
174014	chr4	26404721	26405000	+	0	NA	intron (NM_015874, intron 2 of 10)	intron (NM_015874, intron 2 of 10)	61720	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
193059	chr6	28673951	28674450	+	0	NA	Intergenic	Intergenic	-19725	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
23520	chr1	229051421	229051680	+	0	NA	Intergenic	L1PB1|LINE|L1	123251	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
183891	chr5	87341951	87342250	+	0	NA	intron (NM_022650, intron 6 of 24)	intron (NM_022650, intron 6 of 24)	-18472	NR_130929	644285		NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
5665	chr1	26315121	26316330	+	0	NA	intron (NM_145345, intron 1 of 14)	AluSq2|SINE|Alu	-2233	NM_001803	1043		NM_001803	ENSG00000169442	CD52	CDW52|EDDM5|HE5	CD52 molecule	protein-coding
215525	chr7	158761901	158762100	+	0	NA	intron (NM_020728, intron 10 of 21)	intron (NM_020728, intron 10 of 21)	-57196	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
90964	chr17	2689501	2690650	+	0	NA	3' UTR (NM_001366662, exon 26 of 26)	3' UTR (NM_001366662, exon 26 of 26)	2844	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
175788	chr4	77799321	77799780	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluSq2|SINE|Alu	19514	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
61206	chr13	49450001	49450500	+	0	NA	intron (NM_001320699, intron 1 of 13)	L1ME3C|LINE|L1	5976	NM_001160308	83852		NM_031915	ENSG00000136169	SETDB2	C13orf4|CLLD8|CLLL8|KMT1F	SET domain bifurcated histone lysine methyltransferase 2	protein-coding
161031	chr3	37993151	37993250	+	0	NA	promoter-TSS (NM_001370265)	promoter-TSS (NM_001370265)	-938	NM_001370264	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
195372	chr6	36685371	36685530	+	0	NA	intron (NM_001374511, intron 2 of 2)	MER3|DNA|hAT-Charlie	6736	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
178703	chr4	152606901	152607300	+	0	NA	Intergenic	Intergenic	70672	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
113113	chr19	8299171	8299400	+	0	NA	Intergenic	AluSx|SINE|Alu	9073	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
153193	chr22	23847901	23848550	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-8478	NR_104248	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
130357	chr2	85016651	85016950	+	0	NA	intron (NM_020122, intron 1 of 6)	AluSx1|SINE|Alu	45639	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
200359	chr6	134156801	134157230	+	0	NA	Intergenic	Intergenic	17851	NM_005627	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
17542	chr1	156795551	156795650	+	0	NA	intron (NM_005973, intron 5 of 6)	intron (NM_005973, intron 5 of 6)	-20150	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
128863	chr2	64018451	64021080	+	0	NA	promoter-TSS (NM_001005739)	promoter-TSS (NM_001005739)	-337	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
107934	chr18	57831651	57831950	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-28485	NM_001374385	5205		NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
98947	chr17	48637521	48637780	+	0	NA	Intergenic	Intergenic	-5091	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
169498	chr3	169813651	169814400	+	0	NA	Intergenic	LTR1A1|LTR|ERV1	-1121	NM_001172779	151827		NM_153353	ENSG00000171757	LRRC34	-	leucine rich repeat containing 34	protein-coding
161304	chr3	39387071	39387230	+	0	NA	intron (NM_001354798, intron 1 of 5)	intron (NM_001354798, intron 1 of 5)	3780	NM_017875	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
105246	chr17	82416371	82416950	+	0	NA	intron (NM_175902, intron 1 of 9)	AluSq2|SINE|Alu	-1687	NM_173620	284004		NM_173620	ENSG00000169660	HEXD	HEXDC	hexosaminidase D	protein-coding
18721	chr1	167460451	167461230	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	57689	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
206121	chr7	27245801	27246630	+	0	NA	exon (NM_001304519, exon 3 of 3)	exon (NM_001304519, exon 3 of 3)	1014	NR_120507	101410536		NR_120507	ENSG00000253405	EVX1-AS	EVX1-AS1|EVX1AS	EVX1 antisense RNA	ncRNA
221472	chr8	124478101	124479150	+	0	NA	intron (NM_007218, intron 1 of 1)	AluSz6|SINE|Alu	3745	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
17054	chr1	156095871	156096030	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	13377	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
125597	chr2	17672801	17673000	+	0	NA	intron (NM_024624, intron 24 of 26)	L1ME3|LINE|L1	80910	NM_001142286	79677		NM_024624	ENSG00000163029	SMC6	SMC-6|SMC6L1|hSMC6	structural maintenance of chromosomes 6	protein-coding
237232	chrX	109748851	109749030	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-15548	NM_022977	2182		NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68|XLID63	acyl-CoA synthetase long chain family member 4	protein-coding
42339	chr11	68503301	68503730	+	0	NA	intron (NM_001352362, intron 2 of 24)	L2b|LINE|L2	42763	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
43859	chr11	88303851	88303950	+	0	NA	intron (NM_001814, intron 4 of 6)	MER21A|LTR|ERVL	33836	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
134859	chr2	148679001	148679400	+	0	NA	intron (NM_015630, intron 1 of 13)	intron (NM_015630, intron 1 of 13)	34449	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
167800	chr3	133494651	133494750	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-3554	NR_135276	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
204857	chr7	5825401	5825880	+	0	NA	intron (NR_023382, intron 1 of 6)	L1M4|LINE|L1	2480	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
51867	chr12	53485921	53487300	+	0	NA	exon (NM_001193511, exon 3 of 14)	exon (NM_001193511, exon 3 of 14)	12848	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
99001	chr17	48751971	48753100	+	0	NA	Intergenic	Intergenic	-23785	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
112424	chr19	6262171	6262530	+	0	NA	intron (NM_005934, intron 2 of 11)	intron (NM_005934, intron 2 of 11)	17625	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
145963	chr20	46308201	46310200	+	0	NA	promoter-TSS (NM_021248)	promoter-TSS (NM_021248)	-702	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
118755	chr19	38369671	38369830	+	0	NA	intron (NM_001330496, intron 25 of 27)	intron (NM_001330496, intron 25 of 27)	-4821	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
94064	chr17	27455051	27455350	+	0	NA	Intergenic	Intergenic	-1248	NM_001367810	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
83340	chr16	25013551	25013650	+	0	NA	intron (NM_018054, intron 1 of 18)	AluJb|SINE|Alu	1769	NM_001006634	55114		NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
87666	chr16	74597651	74597950	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluY|SINE|Alu	9314	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
42137	chr11	67641251	67641550	+	0	NA	Intergenic	Intergenic	-1840	NM_005995	347853		NM_005995	ENSG00000167800	TBX10	TBX13|TBX7	T-box transcription factor 10	protein-coding
71832	chr15	22184571	22184980	+	0	NA	Intergenic	Intergenic	-6179	NR_135666	646370		NR_135666		IGHV1OR15-3	IGHV1OR153	immunoglobulin heavy variable 1/OR15-3 (pseudogene)	pseudo
21792	chr1	207005001	207005450	+	0	NA	Intergenic	Intergenic	27531	NM_001083924	79098		NM_023938	ENSG00000182795	C1orf116	SARG	chromosome 1 open reading frame 116	protein-coding
46024	chr11	122637501	122637950	+	0	NA	Intergenic	Intergenic	-17997	NM_001363365	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
57048	chr12	120853851	120854300	+	0	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	50283	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
13583	chr1	116174321	116174630	+	0	NA	Intergenic	Intergenic	62720	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
223492	chr8	144063021	144063680	+	0	NA	Intergenic	L2a|LINE|L2	-2658	NM_017570	26873		NM_017570	ENSG00000178814	OPLAH	5-Opase|OPLA|OPLAHD	5-oxoprolinase, ATP-hydrolysing	protein-coding
16807	chr1	155564871	155565380	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2322	NM_001366177	55870		NM_018489	ENSG00000116539	ASH1L	ASH1|ASH1L1|KMT2H|MRD52	ASH1 like histone lysine methyltransferase	protein-coding
217828	chr8	37336771	37336930	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	157063	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
192133	chr6	16759201	16760700	+	0	NA	intron (NM_000332, intron 1 of 8)	CpG	234	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
135938	chr2	171926321	171926580	+	0	NA	intron (NR_027862, intron 2 of 9)	AluSp|SINE|Alu	3989	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
94998	chr17	32358571	32358730	+	0	NA	intron (NM_001098507, intron 3 of 11)	intron (NM_001098507, intron 3 of 11)	8493	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
63969	chr14	22160251	22160550	+	0	NA	Intergenic	Intergenic	272353	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
130851	chr2	87324601	87325730	+	0	NA	Intergenic	Intergenic	-130262	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
915	chr1	1699821	1700930	+	0	NA	non-coding (NR_002946, exon 2 of 6).2	non-coding (NR_002946, exon 2 of 6).2	436	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
204351	chr7	2893451	2893980	+	0	NA	Intergenic	Intergenic	-49407	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
220285	chr8	98010651	98010770	+	0	NA	intron (NM_030583, intron 10 of 18)	intron (NM_030583, intron 10 of 18)	31507	NR_002581	26775		NR_002581	ENSG00000207067	SNORA72	RNU72|U72	small nucleolar RNA, H/ACA box 72	snoRNA
212476	chr7	128528271	128528700	+	0	NA	Intergenic	AluSc8|SINE|Alu	51737	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
55368	chr12	104290471	104290630	+	0	NA	intron (NM_001261446, intron 2 of 13)	AluSz|SINE|Alu	3518	NM_182743	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
159148	chr3	12682271	12682630	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-18333	NM_002880	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
20243	chr1	193437621	193438300	+	0	NA	Intergenic	L1M1|LINE|L1	133215	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
163443	chr3	50594201	50594930	+	0	NA	3' UTR (NM_001377425, exon 11 of 11)	3' UTR (NM_001377425, exon 11 of 11)	17209	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
28820	chr10	62302721	62302980	+	0	NA	Intergenic	LTR49|LTR|ERV1	-34006	NM_145307	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
151173	chr21	44969751	44970650	+	0	NA	intron (NM_001316986, intron 4 of 4)	L1MC3|LINE|L1	23886	NR_033840	727699		NR_033840	ENSG00000234880	LINC00163	C21orf134|NCRNA00163|NLC1-A|NLC1A	long intergenic non-protein coding RNA 163	ncRNA
56492	chr12	116258151	116258650	+	0	NA	intron (NM_015335, intron 1 of 30)	intron (NM_015335, intron 1 of 30)	19293	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
155056	chr22	37501801	37502400	+	0	NA	intron (NM_014550, intron 11 of 19)	intron (NM_014550, intron 11 of 19)	-15713	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
124530	chr2	237701	238130	+	0	NA	intron (NR_104225, intron 4 of 9)	intron (NR_104225, intron 4 of 9)	18425	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
103707	chr17	78824571	78824730	+	0	NA	intron (NR_169583, intron 6 of 22)	L1MC4|LINE|L1	16164	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
233709	chrX	1290651	1290950	+	0	NA	intron (NM_172249, intron 7 of 8)	AluSx|SINE|Alu	-3118	NR_037461	100500894		NR_037461	ENSG00000265658	MIR3690	MIR3690-1|MIR3690-2|hsa-mir-3690-1|hsa-mir-3690-2|mir-3690-1|mir-3690-2	microRNA 3690	ncRNA
181871	chr5	54309501	54311290	+	0	NA	intron (NM_019087, intron 1 of 4)	CpG	178	NM_019087	54622		NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
137802	chr2	199929321	199929580	+	0	NA	non-coding (NR_109905, exon 5 of 5)	non-coding (NR_109905, exon 5 of 5)	18157	NM_153689	205327		NM_153689	ENSG00000178074	C2orf69	COXPD53	chromosome 2 open reading frame 69	protein-coding
130965	chr2	87537151	87537700	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	67475	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
32440	chr10	102596421	102596800	+	0	NA	intron (NM_001178133, intron 6 of 10)	intron (NM_001178133, intron 6 of 10)	-47869	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
119070	chr19	39133401	39133600	+	0	NA	intron (NM_001014834, intron 1 of 7)	MIR|SINE|MIR	7714	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
125742	chr2	20668851	20669330	+	0	NA	intron (NM_182828, intron 1 of 1)	intron (NM_182828, intron 1 of 1)	1946	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
209571	chr7	77412151	77412450	+	0	NA	intron (NR_146937, intron 1 of 31)	intron (NR_146937, intron 1 of 31)	-2898	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
156655	chr22	41637601	41637800	+	0	NA	exon (NM_001469, exon 6 of 13)	exon (NM_001469, exon 6 of 13)	16405	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
219918	chr8	86340851	86341180	+	0	NA	Intergenic	Intergenic	-1532	NM_007013	11059		NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
91796	chr17	7025751	7026250	+	0	NA	intron (NM_181844, intron 5 of 8)	AluSc|SINE|Alu	2950	NM_181844	255877		NM_181844	ENSG00000161940	BCL6B	BAZF|ZBTB28|ZNF62	BCL6B transcription repressor	protein-coding
55677	chr12	107405001	107405200	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	84512	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
25989	chr10	11993971	11994580	+	0	NA	intron (NM_080599, intron 8 of 21)	intron (NM_080599, intron 8 of 21)	48534	NM_015542	26019		NM_015542	ENSG00000151461	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense mediated mRNA decay	protein-coding
21981	chr1	209674901	209675850	+	0	NA	promoter-TSS (NR_134511)	promoter-TSS (NR_134511)	-37	NM_015714	50486		NM_015714	ENSG00000123689	G0S2	-	G0/G1 switch 2	protein-coding
90098	chr16	90044271	90044780	+	0	NA	non-coding (NR_027335, exon 3 of 5)	non-coding (NR_027335, exon 3 of 5)	3100	NR_027335	100130015		NR_027335	ENSG00000290738	URAHP	URAH	urate (hydroxyiso-) hydrolase, pseudogene	pseudo
221	chr1	829321	829580	+	0	NA	intron (NR_047524, intron 2 of 3)	(GTGCT)n|Simple_repeat|Simple_repeat	1652	NR_047525	643837		NR_015368	ENSG00000228794	LINC01128	-	long intergenic non-protein coding RNA 1128	ncRNA
36046	chr11	2931651	2932450	+	0	NA	Intergenic	Intergenic	-2630	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
183397	chr5	77777771	77777930	+	0	NA	Intergenic	Intergenic	-1489	NM_001297740	6902		NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
122319	chr19	49132051	49132500	+	0	NA	intron (NR_103842, intron 7 of 28)	AluSx1|SINE|Alu	12731	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
203135	chr6	166942701	166943630	+	0	NA	intron (NM_003730, intron 4 of 8)	intron (NM_003730, intron 4 of 8)	13385	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
25238	chr10	6014251	6015200	+	0	NA	intron (NM_000417, intron 7 of 7)	intron (NM_000417, intron 7 of 7)	-35984	NM_001351095	3601		NM_002189	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor subunit alpha	protein-coding
154844	chr22	37088121	37088380	+	0	NA	intron (NM_153609, intron 7 of 17)	intron (NM_153609, intron 7 of 17)	15406	NM_153609	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
156905	chr22	42219071	42219530	+	0	NA	intron (NM_005650, intron 1 of 5)	AluJr|SINE|Alu	-50453	NR_036498	388906		NR_036498		OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
48559	chr12	10242551	10242930	+	0	NA	intron (NM_001351060, intron 2 of 8)	L1PB|LINE|L1	3779	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
37533	chr11	18635751	18635850	+	0	NA	Intergenic	LTR24C|LTR|ERV1	-1458	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
41620	chr11	66423151	66423450	+	0	NA	intron (NM_178864, intron 5 of 7)	intron (NM_178864, intron 5 of 7)	2265	NM_178864	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
197337	chr6	73420671	73421030	+	0	NA	Intergenic	AluSx3|SINE|Alu	26022	NM_018665	55510		NM_018665	ENSG00000080007	DDX43	CT13|HAGE	DEAD-box helicase 43	protein-coding
55924	chr12	109864071	109864830	+	0	NA	intron (NM_016433, intron 1 of 4)	MIRb|SINE|MIR	16091	NM_016433	51228		NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
167214	chr3	128432121	128432500	+	0	NA	Intergenic	L2a|LINE|L2	-31284	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
18130	chr1	160738911	160739500	+	0	NA	promoter-TSS (NM_001282592)	promoter-TSS (NM_001282592)	-42	NM_021181	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
146848	chr20	51429071	51429800	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	23542	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
132969	chr2	111477001	111477300	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	18011	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
14694	chr1	145891721	145892180	+	0	NA	3' UTR (NM_003637, exon 30 of 30)	3' UTR (NM_003637, exon 30 of 30)	-6084	NM_001280799	148741		NM_144698	ENSG00000198483	ANKRD35	-	ankyrin repeat domain 35	protein-coding
202967	chr6	161261321	161261580	+	0	NA	intron (NM_020133, intron 1 of 8)	L2b|LINE|L2	12611	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
74847	chr15	63517271	63518150	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	13117	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
110182	chr19	1668751	1669750	+	0	NA	Intergenic	Intergenic	-16635	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
231750	chr9	132160721	132162000	+	0	NA	promoter-TSS (NM_032536)	promoter-TSS (NM_032536)	-698	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
44546	chr11	108117701	108118300	+	0	NA	Intergenic	Intergenic	-3567	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
61188	chr13	49249501	49249700	+	0	NA	intron (NM_030911, intron 2 of 9)	AluSx|SINE|Alu	1675	NR_036439	81602		NM_030911	ENSG00000102543	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
53445	chr12	65184901	65185100	+	0	NA	intron (NM_001167614, intron 1 of 12)	FLAM_A|SINE|Alu	15417	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
1350	chr1	2493501	2494480	+	0	NA	intron (NM_001303013, intron 11 of 21)	intron (NM_001303013, intron 11 of 21)	17675	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
89916	chr16	89710401	89710600	+	0	NA	intron (NM_004913, intron 10 of 14)	intron (NM_004913, intron 10 of 14)	-1356	NR_036480	100128881		NR_036480	ENSG00000261373	VPS9D1-AS1	MYU	VPS9D1 antisense RNA 1	ncRNA
107162	chr18	35341501	35341900	+	0	NA	intron (NM_001308123, intron 1 of 3)	Tigger3|DNA|TcMar-Tigger	2720	NM_001375815	7572		NM_006965	ENSG00000172466	ZNF24	KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191	zinc finger protein 24	protein-coding
41571	chr11	66332071	66332700	+	0	NA	exon (NM_001363559, exon 10 of 10)	exon (NM_001363559, exon 10 of 10)	4049	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
45579	chr11	118876221	118877400	+	0	NA	Intergenic	Intergenic	-7082	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
174881	chr4	48767771	48767930	+	0	NA	intron (NM_015030, intron 1 of 63)	LTR67B|LTR|ERVL	12429	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
192716	chr6	26335701	26335980	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-29319	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
215341	chr7	157367571	157368030	+	0	NA	intron (NM_001363676, intron 5 of 6)	AluSp|SINE|Alu	30796	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
235277	chrX	41870701	41871130	+	0	NA	intron (NM_001126055, intron 1 of 24)	MLT1E3|LTR|ERVL-MaLR	52119	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
105279	chr17	82463601	82464130	+	0	NA	intron (NM_001083608, intron 2 of 9)	intron (NM_001083608, intron 2 of 9)	5124	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
62316	chr13	99045861	99047080	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-30685	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
52259	chr12	54428551	54429200	+	0	NA	intron (NR_120487, intron 3 of 3)	intron (NR_120487, intron 3 of 3)	9090	NR_120488	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
177630	chr4	121189121	121190430	+	0	NA	intron (NM_001128843, intron 2 of 12)	intron (NM_001128843, intron 2 of 12)	-25454	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
99873	chr17	56598921	56599780	+	0	NA	Intergenic	Intergenic	5651	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
190561	chr5	180806271	180807000	+	0	NA	intron (NR_157150, intron 1 of 1)	L3|LINE|CR1	-2733	NM_001114620	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
10179	chr1	61387071	61387430	+	0	NA	intron (NM_001145512, intron 8 of 11)	MIRb|SINE|MIR	-133732	NR_104180	645030		NR_104180	ENSG00000237853	NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
80124	chr16	2038271	2038630	+	0	NA	3' UTR (NM_001252073, exon 6 of 6)	3' UTR (NM_001252073, exon 6 of 6)	5156	NM_001252075	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
122013	chr19	48599151	48599650	+	0	NA	TTS (NM_004605)	TTS (NM_004605)	-7342	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
22004	chr1	209784221	209785780	+	0	NA	promoter-TSS (NM_152485)	promoter-TSS (NM_152485)	-441	NM_152485	148304		NM_152485	ENSG00000162757	C1orf74	URLC4	chromosome 1 open reading frame 74	protein-coding
58657	chr12	132525351	132525980	+	0	NA	intron (NM_001382740, intron 2 of 11)	intron (NM_001382740, intron 2 of 11)	20259	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
120315	chr19	43502301	43502750	+	0	NA	intron (NM_198850, intron 2 of 15)	AluJb|SINE|Alu	2308	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
160781	chr3	32940971	32941530	+	0	NA	Intergenic	L1M3|LINE|L1	-10394	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
61881	chr13	77301371	77301530	+	0	NA	intron (NM_015057, intron 1 of 82)	L1MEg|LINE|L1	25644	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
65889	chr14	55180551	55180930	+	0	NA	exon (NM_001146015, exon 6 of 20)	exon (NM_001146015, exon 6 of 20)	10845	NM_001146015	9787		NM_014750	ENSG00000126787	DLGAP5	DLG7|HURP	DLG associated protein 5	protein-coding
135074	chr2	156489321	156489780	+	0	NA	intron (NM_000408, intron 2 of 16)	L2c|LINE|L2	53171	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
108650	chr18	76657521	76657780	+	0	NA	Intergenic	Intergenic	-18639	NR_110784	101927651		NR_110784		LINC01927	-	long intergenic non-protein coding RNA 1927	ncRNA
168834	chr3	152252801	152253580	+	0	NA	intron (NM_001376839, intron 2 of 10)	L2a|LINE|L2	9558	NM_001376819	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
127184	chr2	38388401	38389180	+	0	NA	Intergenic	LTR73|LTR|ERV1	-10206	NM_001330462	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
204678	chr7	5496651	5496950	+	0	NA	promoter-TSS (NR_030318)	promoter-TSS (NR_030318)	-883	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
208156	chr7	64574701	64575100	+	0	NA	intron (NR_077227, intron 1 of 2)	intron (NR_077227, intron 1 of 2)	205	NR_077227	100128885		NR_077227		LOC100128885	-	uncharacterized LOC100128885	ncRNA
175294	chr4	67700731	67701900	+	0	NA	promoter-TSS (NM_018227)	promoter-TSS (NM_018227)	37	NR_015439	550112		NR_015439	ENSG00000248049	UBA6-DT	UBA6-AS1	UBA6 divergent transcript	ncRNA
73598	chr15	44547601	44547800	+	0	NA	intron (NM_001284336, intron 2 of 5)	AluSx3|SINE|Alu	10553	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
68920	chr14	91366951	91368000	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	50345	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
35662	chr11	1866071	1866630	+	0	NA	intron (NM_001242932, intron 1 of 11)	intron (NM_001242932, intron 1 of 11)	1185	NM_001242932	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
113360	chr19	8702101	8702900	+	0	NA	Intergenic	MER74A|LTR|ERVL	-3705	NM_178525	284382		NM_178525	ENSG00000181786	ACTL9	HSD21|SPGF53	actin like 9	protein-coding
9694	chr1	53061921	53063230	+	0	NA	intron (NM_153703, intron 1 of 10)	CpG	362	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
233631	chrX	570971	571680	+	0	NA	Intergenic	AluJb|SINE|Alu	-53019	NM_006883	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
232062	chr9	133471971	133472650	+	0	NA	intron (NM_017585, intron 9 of 9)	intron (NM_017585, intron 9 of 9)	6789	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
171065	chr3	195437171	195437330	+	0	NA	intron (NM_012287, intron 1 of 22)	AluJr4|SINE|Alu	5770	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
108900	chr18	79425121	79425580	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	25051	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
224514	chr9	19104371	19104830	+	0	NA	Intergenic	Intergenic	-1696	NM_001270890	54801		NM_017645	ENSG00000147874	HAUS6	Dgt6|FAM29A	HAUS augmin like complex subunit 6	protein-coding
34524	chr10	132775001	132775200	+	0	NA	intron (NM_005539, intron 12 of 15)	intron (NM_005539, intron 12 of 15)	11047	NM_177400	84504		NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B|SPAX8	NK6 homeobox 2	protein-coding
11229	chr1	88884771	88885530	+	0	NA	intron (NM_001514, intron 2 of 6)	Cheshire|DNA|hAT-Charlie	6417	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
15221	chr1	149475521	149476580	+	0	NA	exon (NM_001351365, exon 1 of 93)	exon (NM_001351365, exon 1 of 93)	152	NM_001351365	101060226		NM_001351365	ENSG00000271383	NBPF19	-	NBPF member 19	protein-coding
81274	chr16	4646251	4646550	+	0	NA	intron (NM_001142291, intron 1 of 15)	AluJo|SINE|Alu	21574	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
222289	chr8	133464201	133464600	+	0	NA	intron (NM_173344, intron 7 of 9)	intron (NM_173344, intron 7 of 9)	107487	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
23869	chr1	234816351	234816850	+	0	NA	Intergenic	Intergenic	-56544	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
61723	chr13	74121721	74121980	+	0	NA	intron (NM_007249, intron 1 of 7)	L1MEf|LINE|L1	12079	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
24619	chr1	246565961	246568030	+	0	NA	promoter-TSS (NM_022366)	promoter-TSS (NM_022366)	539	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
66813	chr14	64736771	64737130	+	0	NA	intron (NM_001308147, intron 13 of 16)	intron (NM_001308147, intron 13 of 16)	32526	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
62788	chr13	108961501	108961780	+	0	NA	exon (NM_001198950, exon 18 of 35)	exon (NM_001198950, exon 18 of 35)	205663	NR_047700	100885782		NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
173953	chr4	25912571	25912730	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1542	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
44742	chr11	111949851	111950350	+	0	NA	intron (NM_001037954, intron 1 of 19)	L3|LINE|CR1	12757	NM_001037954	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
105122	chr17	82219401	82220200	+	0	NA	Intergenic	Intergenic	-6958	NM_001367828	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
9021	chr1	44739301	44740580	+	0	NA	exon (NM_001297655, exon 1 of 20)	exon (NM_001297655, exon 1 of 20)	103	NM_006845	11004		NM_006845	ENSG00000142945	KIF2C	CT139|KNSL6|MCAK	kinesin family member 2C	protein-coding
191057	chr6	3279301	3280400	+	0	NA	intron (NR_168069, intron 7 of 7)	intron (NR_168069, intron 7 of 7)	20903	NM_001128591	389362		NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
108365	chr18	68623501	68623780	+	0	NA	Intergenic	Intergenic	91468	NM_001350517	54495		NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
113655	chr19	10375721	10376180	+	0	NA	intron (NM_001385207, intron 3 of 24)	intron (NM_001385207, intron 3 of 24)	4622	NM_001385207	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
212839	chr7	130667951	130669650	+	0	NA	promoter-TSS (NM_012133)	promoter-TSS (NM_012133)	-42	NM_001290033	26958		NM_012133	ENSG00000158623	COPG2	2-COP|gamma-2-COP	COPI coat complex subunit gamma 2	protein-coding
197441	chr6	73722551	73722850	+	0	NA	intron (NM_001159588, intron 2 of 31)	intron (NM_001159588, intron 2 of 31)	26497	NM_133493	135228		NM_133493	ENSG00000156535	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
92358	chr17	8191971	8193180	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-2395	NM_017622	54785		NM_017622	ENSG00000196544	BORCS6	C17orf59|PRO2472	BLOC-1 related complex subunit 6	protein-coding
93838	chr17	20991101	20991500	+	0	NA	Intergenic	Intergenic	51711	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
150403	chr21	42313321	42313580	+	0	NA	intron (NM_003226, intron 2 of 2)	intron (NM_003226, intron 2 of 2)	1959	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
192512	chr6	25014771	25016050	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	26878	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
139591	chr2	224984251	224984350	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	-1873	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
51377	chr12	51850871	51851030	+	0	NA	intron (NR_135803, intron 2 of 2)	intron (NR_135803, intron 2 of 2)	-2232	NM_001384995	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
136463	chr2	177164351	177165200	+	0	NA	Intergenic	Intergenic	47636	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
183379	chr5	77620551	77620730	+	0	NA	Intergenic	Intergenic	18073	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
173603	chr4	10640751	10641050	+	0	NA	intron (NM_052964, intron 2 of 18)	intron (NM_052964, intron 2 of 18)	43868	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
194987	chr6	35368251	35368950	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	26042	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
11905	chr1	93348051	93348680	+	0	NA	intron (NM_001938, intron 1 of 2)	intron (NM_001938, intron 1 of 2)	2458	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
186317	chr5	134585971	134586200	+	0	NA	Intergenic	Intergenic	46743	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
83019	chr16	22294751	22295180	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-2410	NM_001258035	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
113905	chr19	10691051	10691430	+	0	NA	3' UTR (NM_017620, exon 20 of 20)	3' UTR (NM_017620, exon 20 of 20)	-10199	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
93131	chr17	17727251	17727550	+	0	NA	intron (NM_030665, intron 2 of 5)	MIR3|SINE|MIR	38902	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
103882	chr17	79785571	79786480	+	0	NA	3' UTR (NM_005189, exon 5 of 5)	3' UTR (NM_005189, exon 5 of 5)	7847	NM_032647	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
215437	chr7	157690501	157691300	+	0	NA	intron (NM_130842, intron 11 of 21)	CpG	-116478	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
45320	chr11	118178551	118178850	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2061	NM_004588	6327		NM_004588	ENSG00000149575	SCN2B	ATFB14	sodium voltage-gated channel beta subunit 2	protein-coding
210769	chr7	100695361	100697050	+	0	NA	Intergenic	Intergenic	-1955	NM_001375763	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
12933	chr1	110671721	110672500	+	0	NA	promoter-TSS (NR_109846)	promoter-TSS (NR_109846)	-335	NR_109846	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
207789	chr7	50231021	50231280	+	0	NA	Intergenic	Intergenic	-72914	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
137787	chr2	199488771	199489030	+	0	NA	Intergenic	Intergenic	-17634	NM_015265	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
77605	chr15	85318021	85318750	+	0	NA	Intergenic	Intergenic	-62211	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
137619	chr2	197307901	197309030	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	2315	NM_153697	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
207617	chr7	44988151	44988880	+	0	NA	Intergenic	AluSp|SINE|Alu	-1819	NR_152596	285958		NR_003697	ENSG00000232956	SNHG15	C7orf40|Linc-Myo1g|MYO1GUT	small nucleolar RNA host gene 15	ncRNA
215896	chr8	8065241	8066450	+	0	NA	Intergenic	CpG	23244	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
234160	chrX	11137571	11137800	+	0	NA	non-coding (NR_109776, exon 15 of 15)	non-coding (NR_109776, exon 15 of 15)	26353	NM_005333	3052		NM_005333	ENSG00000004961	HCCS	CCHL|LSDMCA1|MCOPS7|MLS	holocytochrome c synthase	protein-coding
184208	chr5	95952971	95953330	+	0	NA	intron (NM_012081, intron 1 of 11)	L2c|LINE|L2	8701	NM_012081	22936		NM_012081	ENSG00000118985	ELL2	MRCCAT1	elongation factor for RNA polymerase II 2	protein-coding
76452	chr15	74833851	74834380	+	0	NA	Intergenic	Intergenic	6592	NR_106942	102465531		NR_106942	ENSG00000275411	MIR6882	hsa-mir-6882	microRNA 6882	ncRNA
134666	chr2	144466651	144467050	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-52764	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
226412	chr9	70424351	70425530	+	0	NA	Intergenic	L2a|LINE|L2	-10283	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
185052	chr5	115845251	115845750	+	0	NA	intron (NR_157087, intron 1 of 5)	intron (NR_157087, intron 1 of 5)	3013	NR_157087	1176		NM_001284	ENSG00000177879	AP3S1	CLAPS3|Sigma3A	adaptor related protein complex 3 subunit sigma 1	protein-coding
8488	chr1	40818051	40819530	+	0	NA	intron (NM_172163, intron 4 of 12)	CpG-966	35003	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
111184	chr19	3428421	3428680	+	0	NA	intron (NM_205843, intron 3 of 10)	intron (NM_205843, intron 3 of 10)	51975	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
44308	chr11	102354101	102354500	+	0	NA	intron (NM_001256166, intron 3 of 8)	AluSx1|SINE|Alu	6926	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
25055	chr10	3782101	3784300	+	0	NA	intron (NR_027653, intron 1 of 3)	intron (NR_027653, intron 1 of 3)	2009	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
168050	chr3	136932651	136933300	+	0	NA	intron (NM_001190796, intron 1 of 2)	L3|LINE|CR1	2473	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
164910	chr3	71134151	71134730	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	-2243	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
230011	chr9	126988321	126988580	+	0	NA	intron (NM_001190729, intron 4 of 17)	AluJr|SINE|Alu	26225	NM_001366401	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
123864	chr19	55261651	55261950	+	0	NA	TTS (NM_001297600)	TTS (NM_001297600)	-2783	NM_014931	22870		NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding
62123	chr13	95643771	95643930	+	0	NA	intron (NM_014934, intron 1 of 21)	intron (NM_014934, intron 1 of 21)	856	NM_198968	22873		NM_014934	ENSG00000134874	DZIP1	DZIP|DZIPt1|MMVP3|MVP3|SPGF47	DAZ interacting zinc finger protein 1	protein-coding
51668	chr12	53060951	53061200	+	0	NA	exon (NM_015319, exon 20 of 29)	exon (NM_015319, exon 20 of 29)	4131	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
63747	chr14	21230801	21232930	+	0	NA	intron (NM_001077443, intron 2 of 7)	intron (NM_001077443, intron 2 of 7)	-24965	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
189363	chr5	172462201	172462400	+	0	NA	Intergenic	AluYh3|SINE|Alu	-7775	NM_001017995	285590		NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
139417	chr2	222657871	222658030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1858	NR_130154	10056		NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC|RILDBC1|RJBS	phenylalanyl-tRNA synthetase subunit beta	protein-coding
76234	chr15	73959051	73959830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-31192	NR_040068	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
158194	chr22	50239401	50240000	+	0	NA	intron (NM_020461, intron 2 of 24)	intron (NM_020461, intron 2 of 24)	5323	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
209419	chr7	76354051	76354550	+	0	NA	intron (NM_012479, intron 1 of 1)	AluSx1|SINE|Alu	4691	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
118114	chr19	34639501	34639950	+	0	NA	intron (NR_027620, intron 1 of 3)	intron (NR_027620, intron 1 of 3)	-6148	NR_045208	100130342		NR_045208		SCGB2B3P	C2B|SCGB4A3P	secretoglobin family 2B member 3, pseudogene	pseudo
8259	chr1	39787451	39787780	+	0	NA	intron (NM_001720, intron 1 of 6)	intron (NM_001720, intron 1 of 6)	1250	NM_001720	656		NM_001720	ENSG00000116985	BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
173704	chr4	15729921	15730250	+	0	NA	intron (NM_004334, intron 8 of 8)	intron (NM_004334, intron 8 of 8)	27020	NM_004334	683		NM_004334	ENSG00000109743	BST1	CD157|cADPR2	bone marrow stromal cell antigen 1	protein-coding
22192	chr1	212367421	212368300	+	0	NA	intron (NR_165303, intron 8 of 8)	L1MA4|LINE|L1	15042	NR_004389	692157		NR_004389	ENSG00000201544	SNORA16B	U98b	small nucleolar RNA, H/ACA box 16B	snoRNA
221828	chr8	128070321	128070580	+	0	NA	intron (NR_003367, intron 6 of 8)	L1ME5|LINE|L1	21298	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
134698	chr2	144493351	144494250	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-25814	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
75166	chr15	64650201	64650400	+	0	NA	intron (NM_015042, intron 3 of 9)	AluSx|SINE|Alu	52981	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
21596	chr1	206551551	206552830	+	0	NA	intron (NM_182663, intron 2 of 5)	intron (NM_182663, intron 2 of 5)	-4974	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
205094	chr7	6729401	6730450	+	0	NA	Intergenic	CpG	-5380	NR_002217	441194		NR_002217	ENSG00000187953	PMS2CL	PMS2P13	PMS2 C-terminal like (pseudogene)	pseudo
215868	chr8	7601971	7602280	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-27727	NR_046343								
41737	chr11	66672101	66672780	+	0	NA	intron (NM_031492, intron 2 of 3)	AluSx|SINE|Alu	5447	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
95269	chr17	35498051	35499100	+	0	NA	intron (NM_001363830, intron 2 of 4)	intron (NM_001363830, intron 2 of 4)	-10836	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
91261	chr17	3973951	3974630	+	0	NA	Intergenic	Intergenic	-2813	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
156360	chr22	40957521	40957930	+	0	NA	intron (NM_014248, intron 2 of 4)	AluJo|SINE|Alu	6347	NM_014248	9978		NM_014248	ENSG00000100387	RBX1	BA554C12.1|RNF75|ROC1	ring-box 1	protein-coding
167857	chr3	134251871	134252030	+	0	NA	Intergenic	Intergenic	-1091	NM_002958	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
204800	chr7	5637521	5637780	+	0	NA	intron (NM_207111, intron 15 of 16)	AluJb|SINE|Alu	42811	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
86872	chr16	67970421	67970680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1856	NM_001145962	6560		NM_005072	ENSG00000124067	SLC12A4	CTC-479C5.17|KCC1|hKCC1	solute carrier family 12 member 4	protein-coding
31362	chr10	93502871	93503380	+	0	NA	exon (NM_001127182, exon 3 of 9)	exon (NM_001127182, exon 3 of 9)	6513	NM_001127182	55165		NM_018131	ENSG00000138180	CEP55	C10orf3|CT111|MARCH|URCC6	centrosomal protein 55	protein-coding
53558	chr12	67591721	67591980	+	0	NA	Intergenic	Intergenic	-56895	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
69066	chr14	91968221	91968930	+	0	NA	3' UTR (NM_004239, exon 21 of 21)	3' UTR (NM_004239, exon 21 of 21)	-20881	NM_001384162	10516		NM_006329	ENSG00000140092	FBLN5	ADCL2|ARCL1A|ARMD3|CMT1H|DANCE|EVEC|FIBL-5|HNARMD|UP50	fibulin 5	protein-coding
159239	chr3	12919121	12919780	+	0	NA	intron (NM_014869, intron 6 of 13)	intron (NM_014869, intron 6 of 13)	-34239	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
130300	chr2	84919101	84920750	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	14269	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
218130	chr8	41580751	41581100	+	0	NA	intron (NM_001363197, intron 1 of 12)	intron (NM_001363197, intron 1 of 12)	2409	NM_001363197	137964		NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
146361	chr20	49266471	49266630	+	0	NA	intron (NM_021035, intron 3 of 13)	L1ME4b|LINE|L1	11507	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
158929	chr3	10025701	10027480	+	0	NA	promoter-TSS (NR_002786)	promoter-TSS (NR_002786)	153	NM_001319984	2177		NM_033084	ENSG00000144554	FANCD2	FA-D2|FA4|FACD|FAD|FAD2|FANCD	FA complementation group D2	protein-coding
189069	chr5	170269501	170269930	+	0	NA	intron (NM_005565, intron 7 of 20)	L2c|LINE|L2	28062	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
118636	chr19	37291621	37291880	+	0	NA	Intergenic	SST1|Satellite|centr	-21087	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
175972	chr4	81473801	81474200	+	0	NA	Intergenic	L1PA7|LINE|L1	-2093	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
145514	chr20	44021471	44021830	+	0	NA	intron (NM_032883, intron 4 of 9)	AluJb|SINE|Alu	75754	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
65414	chr14	50826551	50826850	+	0	NA	intron (NM_020921, intron 2 of 30)	intron (NM_020921, intron 2 of 30)	4421	NM_182946	51199		NM_016350	ENSG00000100503	NIN	SCKL7	ninein	protein-coding
28075	chr10	43332001	43333000	+	0	NA	Intergenic	AluSz|SINE|Alu	-39136	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
10867	chr1	78001151	78001750	+	0	NA	intron (NM_001317100, intron 2 of 3)	intron (NM_001317100, intron 2 of 3)	-3378	NM_001317103	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
232236	chr9	134384621	134385830	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	5814	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
201265	chr6	144157301	144157500	+	0	NA	intron (NM_003764, intron 1 of 1)	LTR16|LTR|ERVL	6883	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
24311	chr1	236797871	236798300	+	0	NA	intron (NM_000254, intron 1 of 32)	CR1_Mam|LINE|CR1	2793	NM_000254	4548		NM_000254	ENSG00000116984	MTR	HMAG|MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
91592	chr17	5242051	5243150	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-7740	NM_001271842	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
78697	chr15	96890171	96890330	+	0	NA	Intergenic	Intergenic	106815	NR_158223	145946		NM_173499	ENSG00000185594	SPATA8	SRG8	spermatogenesis associated 8	ncRNA
92196	chr17	7841201	7843100	+	0	NA	intron (NM_001348716, intron 1 of 22)	CpG	2233	NM_001080424	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
125546	chr2	15313721	15313980	+	0	NA	intron (NR_052013, intron 38 of 50)	intron (NR_052013, intron 38 of 50)	247484	NM_015909	51594		NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	NBAS subunit of NRZ tethering complex	protein-coding
84803	chr16	31067651	31068850	+	0	NA	intron (NM_024706, intron 1 of 2)	(AT)n|Simple_repeat|Simple_repeat	-3162	NM_001172670	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
210835	chr7	100968401	100969700	+	0	NA	promoter-TSS (NM_001164462)	promoter-TSS (NM_001164462)	-573	NM_001164462	10071		NM_001164462	ENSG00000205277	MUC12	MUC-11|MUC-12|MUC11	mucin 12, cell surface associated	protein-coding
186084	chr5	134106571	134107150	+	0	NA	Intergenic	MIR|SINE|MIR	-7821	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
72299	chr15	31129001	31129680	+	0	NA	intron (NM_001252020, intron 1 of 26).2	intron (NM_001252020, intron 1 of 26).2	-27615	NM_002420	4308		NM_002420	ENSG00000134160	TRPM1	CSNB1C|LTRPC1|MLSN1	transient receptor potential cation channel subfamily M member 1	protein-coding
222853	chr8	142626221	142626680	+	0	NA	Intergenic	Intergenic	-11971	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
564	chr1	1256851	1257830	+	0	NA	intron (NM_194457, intron 2 of 5)	intron (NM_194457, intron 2 of 5)	-10618	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
36754	chr11	9346901	9347350	+	0	NA	Intergenic	Intergenic	-32532	NM_001165030	440026		NM_015012	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
29680	chr10	72046421	72046850	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	41916	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
18844	chr1	167709921	167710500	+	0	NA	Intergenic	Intergenic	-11772	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
198354	chr6	105317971	105318130	+	0	NA	intron (NM_002726, intron 10 of 14)	intron (NM_002726, intron 10 of 14)	85032	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
26913	chr10	26460451	26460900	+	0	NA	intron (NM_019043, intron 2 of 14)	L1PA11|LINE|L1	22334	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
74426	chr15	59161351	59161450	+	0	NA	intron (NM_004998, intron 23 of 27)	intron (NM_004998, intron 23 of 27)	9862	NR_031750	100313886		NR_031750	ENSG00000253030	MIR2116	mir-2116	microRNA 2116	ncRNA
58410	chr12	131913401	131913800	+	0	NA	intron (NM_003565, intron 14 of 27)	AluSc8|SINE|Alu	-15676	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
23177	chr1	226815171	226815330	+	0	NA	Intergenic	Intergenic	-55322	NM_012486	5664		NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2	protein-coding
235299	chrX	42474751	42474850	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	303363	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
105297	chr17	82509271	82509630	+	0	NA	Intergenic	AluY|SINE|Alu	-10282	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
199995	chr6	128258801	128259480	+	0	NA	intron (NM_001291983, intron 2 of 18)	Charlie17a|DNA|hAT-Charlie	231275	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
217	chr1	824851	825250	+	0	NA	Intergenic	Intergenic	2472	NR_024321	79854		NM_024796		LINC00115	NCRNA00115	long intergenic non-protein coding RNA 115	ncRNA
88233	chr16	82169521	82170690	+	0	NA	intron (NM_005792, intron 1 of 4)	CpG	119	NM_005792	10200		NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
49921	chr12	39628851	39629450	+	0	NA	intron (NR_135051, intron 1 of 18)	intron (NR_135051, intron 1 of 18)	2967	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
120426	chr19	44003721	44004150	+	0	NA	intron (NM_006300, intron 1 of 4)	MIR|SINE|MIR	978	NM_006300	7773		NM_006300	ENSG00000159882	ZNF230	FDZF2	zinc finger protein 230	protein-coding
34216	chr10	129958421	129959080	+	0	NA	intron (NM_001375379, intron 5 of 15)	CpG	5524	NM_001005463	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
183073	chr5	73604001	73604600	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-21858	NM_001080479	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
212765	chr7	129950171	129950330	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	2710	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
129455	chr2	69559721	69560430	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-39904	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
36274	chr11	3795871	3799000	+	0	NA	promoter-TSS (NM_001256237)	promoter-TSS (NM_001256237)	111	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
156736	chr22	41808371	41808730	+	0	NA	intron (NM_001382346, intron 2 of 7)	MIRb|SINE|MIR	7871	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
58151	chr12	124923871	124924630	+	0	NA	Intergenic	Intergenic	8703	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
102198	chr17	75173371	75173530	+	0	NA	intron (NM_001005849, intron 2 of 2)	AluJr|SINE|Alu	9509	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
68422	chr14	81201171	81201330	+	0	NA	intron (NM_015859, intron 4 of 8)	intron (NM_015859, intron 4 of 8)	1584	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
181093	chr5	36894921	36895380	+	0	NA	intron (NM_133433, intron 1 of 46)	L1MB7|LINE|L1	18381	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
74648	chr15	60863471	60863830	+	0	NA	intron (NM_134261, intron 1 of 10)	MIRb|SINE|MIR	182081	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
166245	chr3	112297321	112298150	+	0	NA	Intergenic	L1M4|LINE|L1	-3519	NR_135297	285335		NM_183061	ENSG00000172139	SLC9C1	NHE|NHE-10|SLC9A10|sperm-NHE	solute carrier family 9 member C1	protein-coding
23379	chr1	228173621	228174880	+	0	NA	promoter-TSS (NM_001310327)	promoter-TSS (NM_001310327)	-320	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
132806	chr2	110417951	110418050	+	0	NA	intron (NR_027145, intron 15 of 17).2	L1PA6|LINE|L1	5816	NR_027142	440895		NR_027142	ENSG00000290731	LOC440895	-	two pore channel 3 pseudogene	pseudo
39593	chr11	61297271	61297630	+	0	NA	Intergenic	Intergenic	-2134	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
96904	chr17	42127271	42127430	+	0	NA	intron (NM_004583, intron 4 of 5)	intron (NM_004583, intron 4 of 5)	4546	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
160302	chr3	27466471	27466930	+	0	NA	intron (NR_135544, intron 1 of 24)	AluSx|SINE|Alu	-9922	NM_001258380	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
200585	chr6	136551401	136551600	+	0	NA	promoter-TSS (NM_001198616)	promoter-TSS (NM_001198616)	-681	NM_003980	9053		NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
217565	chr8	29410101	29410300	+	0	NA	Intergenic	Intergenic	-59516	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
124362	chr19	58353921	58354180	+	0	NA	promoter-TSS (NM_130786)	promoter-TSS (NM_130786)	-558	NM_130786	1		NM_130786	ENSG00000121410	A1BG	A1B|ABG|GAB|HYST2477	alpha-1-B glycoprotein	protein-coding
79245	chr16	395721	395980	+	0	NA	promoter-TSS (NM_001286436)	promoter-TSS (NM_001286436)	-879	NM_001286436	4833		NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
220474	chr8	100444271	100444630	+	0	NA	Intergenic	MIRb|SINE|MIR	61687	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
103750	chr17	78920271	78920630	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	4937	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
58858	chr12	133036771	133038030	+	0	NA	promoter-TSS (NM_001289971)	promoter-TSS (NM_001289971)	-109	NM_001127372	7637		NM_003428	ENSG00000198040	ZNF84	HPF2	zinc finger protein 84	protein-coding
149813	chr21	34997401	34997800	+	0	NA	intron (NM_001754, intron 2 of 8)	L3b|LINE|CR1	41826	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
154434	chr22	35349221	35349480	+	0	NA	Intergenic	Intergenic	-12551	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
205406	chr7	16420401	16421800	+	0	NA	exon (NM_001368197, exon 1 of 9)	exon (NM_001368197, exon 1 of 9)	438	NM_001101417	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
238731	chrX	154240201	154240600	+	0	NA	Intergenic	AluSz|SINE|Alu	-17138	NM_001048181	728458		NM_001048181	ENSG00000166160	OPN1MW2	GOP	opsin 1, medium wave sensitive 2	protein-coding
104230	chr17	80678671	80679650	+	0	NA	intron (NM_020761, intron 3 of 33)	AluSg4|SINE|Alu	126472	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
167351	chr3	128762521	128762880	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	36517	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
66449	chr14	61543071	61543300	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	27009	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
230884	chr9	129205251	129205350	+	0	NA	Intergenic	AluSz|SINE|Alu	-27039	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
43696	chr11	85949001	85949430	+	0	NA	Intergenic	Intergenic	93832	NM_001286159	220047		NM_173556	ENSG00000150676	CCDC83	CT148|HSD9|KP-CoT-23	coiled-coil domain containing 83	protein-coding
99363	chr17	49907771	49907930	+	0	NA	Intergenic	Intergenic	-59833	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
170253	chr3	184241821	184242450	+	0	NA	TTS (NM_005787)	TTS (NM_005787)	730	NR_030410	100187716		NR_030410	ENSG00000221120	MIR1224	MIRN1224|mir-1224	microRNA 1224	ncRNA
237098	chrX	104110121	104111190	+	0	NA	intron (NM_001012755, intron 1 of 1)	intron (NM_001012755, intron 1 of 1)	-1868	NR_026694	644353		NM_001143978	ENSG00000166707	ZCCHC18	PNMA7B|SIZN2	zinc finger CCHC-type containing 18	protein-coding
17746	chr1	158997501	158997700	+	0	NA	Intergenic	L1MA8|LINE|L1	-2376	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
45065	chr11	117059421	117060300	+	0	NA	intron (NM_001281748, intron 1 of 24)	L1MC2|LINE|L1	38568	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
13544	chr1	115089151	115090650	+	0	NA	promoter-TSS (NM_001308316)	promoter-TSS (NM_001308316)	-397	NM_005725	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
234313	chrX	13731601	13731800	+	0	NA	intron (NM_014563, intron 1 of 4)	L3|LINE|CR1	2920	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
229271	chr9	120477471	120477700	+	0	NA	intron (NM_018249, intron 14 of 37)	intron (NM_018249, intron 14 of 37)	102582	NM_001011649	55755		NM_018249	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
183346	chr5	76818001	76818300	+	0	NA	promoter-TSS (NM_005242)	promoter-TSS (NM_005242)	-880	NM_005242	2150		NM_005242	ENSG00000164251	F2RL1	GPR11|PAR2	F2R like trypsin receptor 1	protein-coding
189110	chr5	170336001	170337300	+	0	NA	Intergenic	Intergenic	5257	NR_108024	257358		NM_001025454	ENSG00000235172	LINC01366	-	long intergenic non-protein coding RNA 1366	ncRNA
147923	chr20	62911321	62911780	+	0	NA	exon (NM_033081, exon 3 of 16)	exon (NM_033081, exon 3 of 16)	14955	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
101631	chr17	68226471	68226830	+	0	NA	intron (NM_001346471, intron 1 of 6)	intron (NM_001346471, intron 1 of 6)	20521	NM_001346472	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
47345	chr12	1907521	1908530	+	0	NA	exon (NM_172364, exon 5 of 38)	exon (NM_172364, exon 5 of 38)	10627	NM_172364	93589		NM_172364	ENSG00000151062	CACNA2D4	RCD4	calcium voltage-gated channel auxiliary subunit alpha2delta 4	protein-coding
100813	chr17	64065321	64065580	+	0	NA	intron (NM_001433, intron 8 of 21)	intron (NM_001433, intron 8 of 21)	-44816	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
93720	chr17	19512471	19513180	+	0	NA	Intergenic	MER4D1|LTR|ERV1	-21029	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
2204	chr1	8668971	8669200	+	0	NA	intron (NM_001042681, intron 1 of 22)	AluJb|SINE|Alu	148555	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
202948	chr6	161029121	161029580	+	0	NA	intron (NM_006724, intron 1 of 25)	intron (NM_006724, intron 1 of 25)	37581	NM_005922	4216		NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
217472	chr8	28868371	28868630	+	0	NA	intron (NM_001363038, intron 1 of 16)	intron (NM_001363038, intron 1 of 16)	21415	NM_001172562	55756		NM_018250	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
116342	chr19	17855121	17856280	+	0	NA	Intergenic	Intergenic	-4210	NM_000980	6142		NM_000980	ENSG00000105640	RPL18A	L18A|eL20	ribosomal protein L18a	protein-coding
163833	chr3	52460051	52460730	+	0	NA	intron (NM_001276294, intron 3 of 13)	intron (NM_001276294, intron 3 of 13)	4786	NM_001276294	11188		NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
19623	chr1	179969001	179969450	+	0	NA	intron (NM_014810, intron 1 of 37)	intron (NM_014810, intron 1 of 37)	14415	NM_014810	9857		NM_014810	ENSG00000135837	CEP350	CAP350|GM133	centrosomal protein 350	protein-coding
104384	chr17	81030671	81031380	+	0	NA	non-coding (NR_026857, exon 2 of 2)	non-coding (NR_026857, exon 2 of 2)	3694	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
20284	chr1	196723371	196723600	+	0	NA	intron (NM_000186, intron 11 of 21)	L1PA15-16|LINE|L1	-51315	NM_001166624	10878		NM_021023	ENSG00000116785	CFHR3	CFHL3|DOWN16|FHR-3|FHR3|HLF4	complement factor H related 3	protein-coding
146867	chr20	51481381	51482580	+	0	NA	intron (NM_173091, intron 3 of 9)	MIRb|SINE|MIR	-29003	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
45090	chr11	117082671	117082830	+	0	NA	intron (NM_001281748, intron 1 of 24)	L1MB8|LINE|L1	15678	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
110205	chr19	1743901	1744800	+	0	NA	Intergenic	MIRc|SINE|MIR	-9156	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
13052	chr1	111406051	111407030	+	0	NA	Intergenic	Intergenic	-16689	NR_029429	441897		NR_029429	ENSG00000290561	PGBP	PGCP1	pepsinogen B, pseudogene	pseudo
80748	chr16	3149071	3149300	+	0	NA	intron (NR_132322, intron 9 of 9)	LTR53B|LTR|ERVL	4894	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
199482	chr6	118620501	118620700	+	0	NA	intron (NM_206921, intron 2 of 5)	HERV30-int|LTR|ERV1	30991	NM_206921	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
168444	chr3	142888521	142889030	+	0	NA	intron (NM_013363, intron 1 of 8)	CpG	308	NM_013363	26577		NM_013363	ENSG00000163710	PCOLCE2	PCPE2	procollagen C-endopeptidase enhancer 2	protein-coding
226741	chr9	76018571	76019130	+	0	NA	intron (NM_006200, intron 3 of 20)	intron (NM_006200, intron 3 of 20)	128177	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
84071	chr16	29596971	29598200	+	0	NA	intron (NR_135317, intron 1 of 11)	AluSz|SINE|Alu	1680	NR_037451	100500917		NR_037451	ENSG00000265462	MIR3680-1	MIR3680|hsa-mir-3680-1	microRNA 3680-1	ncRNA
237066	chrX	103554351	103555450	+	0	NA	promoter-TSS (NR_131236)	promoter-TSS (NR_131236)	53	NR_131236	105373300		NR_131236		LINC02589	-	long intergenic non-protein coding RNA 2589	ncRNA
81046	chr16	4313021	4313380	+	0	NA	Intergenic	AluJr|SINE|Alu	-1561	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
156113	chr22	40092021	40092630	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSz|SINE|Alu	47508	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
108957	chr18	79517331	79518950	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-61142	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
16608	chr1	155068551	155069100	+	0	NA	intron (NM_182689, intron 3 of 3)	intron (NM_182689, intron 3 of 3)	-4834	NR_040773	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
234019	chrX	3709001	3709650	+	0	NA	intron (NM_005044, intron 1 of 8)	L1MC4a|LINE|L1	4324	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
116193	chr19	17472551	17472650	+	0	NA	intron (NM_198580, intron 1 of 11)	AluSx|SINE|Alu	2076	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
104017	chr17	80116921	80117180	+	0	NA	exon (NM_001079804, exon 16 of 20)	exon (NM_001079804, exon 16 of 20)	15469	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
238959	chrX	155086471	155086700	+	0	NA	intron (NM_001018055, intron 5 of 10)	AluSq2|SINE|Alu	15077	NM_001018055	79184		NM_024332	ENSG00000185515	BRCC3	BRCC36|C6.1A|CXorf53	BRCA1/BRCA2-containing complex subunit 3	protein-coding
9346	chr1	46676801	46677400	+	0	NA	3' UTR (NM_014774, exon 11 of 11)	3' UTR (NM_014774, exon 11 of 11)	3064	NR_038827	100130197		NR_038827	ENSG00000228237	EFCAB14-AS1	KIAA0494-AS1	EFCAB14 antisense RNA 1	ncRNA
88315	chr16	84195901	84196300	+	0	NA	intron (NM_001145400, intron 7 of 9)	intron (NM_001145400, intron 7 of 9)	953	NR_147175	654780		NM_001039504	ENSG00000250685	LOC654780	SFPQ	splicing factor proline/glutamine-rich	ncRNA
32942	chr10	110355221	110355500	+	0	NA	Intergenic	Intergenic	-50440	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
227151	chr9	86337171	86337960	+	0	NA	intron (NM_024617, intron 9 of 26)	intron (NM_024617, intron 9 of 26)	16845	NM_001185074	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
98538	chr17	47657651	47658150	+	0	NA	intron (NM_002265, intron 4 of 21)	intron (NM_002265, intron 4 of 21)	6835	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
217104	chr8	24913501	24914000	+	0	NA	promoter-TSS (NM_005382)	promoter-TSS (NM_005382)	-11	NM_005382	4741		NM_005382	ENSG00000104722	NEFM	NEF3|NF-M|NFM	neurofilament medium chain	protein-coding
98769	chr17	48119571	48120130	+	0	NA	intron (NM_152244, intron 7 of 7)	L1MB7|LINE|L1	12084	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
167678	chr3	130095771	130096430	+	0	NA	exon (NM_001136152, exon 6 of 8)	exon (NM_001136152, exon 6 of 8)	-1796	NR_146710	105374105		NR_146710		LINC02014	-	long intergenic non-protein coding RNA 2014	ncRNA
82154	chr16	14835171	14835530	+	0	NA	intron (NM_014287, intron 1 of 30)	intron (NM_014287, intron 1 of 30)	1629	NM_014287	23420		NM_014287	ENSG00000103512	NOMO1	Nomo|PM5	NODAL modulator 1	protein-coding
238609	chrX	153934071	153935650	+	0	NA	TTS (NM_002910)	TTS (NM_002910)	177	NM_001256119	8260		NM_003491	ENSG00000102030	NAA10	ARD1|ARD1A|ARD1P|DXS707|LZMS|MAA|MCOPS1|NATD|OGDNS|TE2|hARD1	N-alpha-acetyltransferase 10, NatA catalytic subunit	protein-coding
50229	chr12	46232171	46232800	+	0	NA	intron (NM_001278387, intron 4 of 17)	intron (NM_001278387, intron 4 of 17)	34031	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
125579	chr2	16649401	16649850	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	16209	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
224963	chr9	33053971	33054330	+	0	NA	intron (NM_018225, intron 9 of 11)	(AAAAC)n|Simple_repeat|Simple_repeat	22524	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
108607	chr18	75245921	75246530	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	35428	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
42631	chr11	72240551	72240650	+	0	NA	intron (NM_005169, intron 2 of 2)	intron (NM_005169, intron 2 of 2)	3576	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
112209	chr19	5693201	5694450	+	0	NA	intron (NR_076392, intron 16 of 18)	intron (NR_076392, intron 16 of 18)	3530	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
197712	chr6	85865871	85866030	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-187217	NR_003038	387066		NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG	small nucleolar RNA host gene 5	ncRNA
220102	chr8	94455321	94455580	+	0	NA	intron (NM_001205262, intron 3 of 3)	L2c|LINE|L2	-18506	NM_001256141	100861412		NM_001256141	ENSG00000265817	FSBP	-	fibrinogen silencer binding protein	protein-coding
202660	chr6	158779051	158779350	+	0	NA	intron (NM_003379, intron 6 of 12)	L1MC4a|LINE|L1	-14447	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
85733	chr16	56662371	56663340	+	0	NA	Intergenic	Intergenic	4896	NM_005949	4494		NM_005949	ENSG00000198417	MT1F	MT1	metallothionein 1F	protein-coding
56965	chr12	120532721	120533230	+	0	NA	Intergenic	LTR54|LTR|ERV1	-1381	NM_014868	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
113532	chr19	10139101	10139500	+	0	NA	intron (NM_001318730, intron 33 of 39)	intron (NM_001318730, intron 33 of 39)	-19401	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
80971	chr16	3898221	3899080	+	0	NA	Intergenic	AluSz|SINE|Alu	-17937	NM_004380	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
55878	chr12	109572721	109574380	+	0	NA	promoter-TSS (NR_038118)	promoter-TSS (NR_038118)	-46	NM_052845	326625		NM_052845	ENSG00000139428	MMAB	ATR|CFAP23|cblB|cob	metabolism of cobalamin associated B	protein-coding
134283	chr2	135819771	135820630	+	0	NA	promoter-TSS (NR_045486)	promoter-TSS (NR_045486)	9	NR_045486	100507600		NR_045486	ENSG00000226806	LCT-AS1	-	LCT antisense RNA 1	ncRNA
7669	chr1	35726651	35727280	+	0	NA	intron (NM_001330490, intron 24 of 24)	intron (NM_001330490, intron 24 of 24)	-8081	NM_152374	127703		NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
169775	chr3	172672971	172673400	+	0	NA	intron (NM_001146276, intron 1 of 4)	HUERS-P3b-int|LTR|ERV1	37882	NM_001146276	57552		NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
102166	chr17	75133051	75133630	+	0	NA	Intergenic	AluJo|SINE|Alu	-1545	NM_001252377	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
131135	chr2	91499971	91500200	+	0	NA	Intergenic	(TGGC)n|Simple_repeat|Simple_repeat	159864	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
146438	chr20	49667071	49667800	+	0	NA	intron (NM_004776, intron 1 of 8)	AluYe5|SINE|Alu	46443	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
159167	chr3	12809051	12809150	+	0	NA	intron (NM_001162499, intron 4 of 14)	L2c|LINE|L2	12420	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
80302	chr16	2265901	2266100	+	0	NA	intron (NM_080594, intron 1 of 7)	intron (NM_080594, intron 1 of 7)	1337	NM_001286625	10921		NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
181399	chr5	40687221	40687590	+	0	NA	intron (NM_000958, intron 2 of 2)	intron (NM_000958, intron 2 of 2)	7490	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
214761	chr7	151075721	151076180	+	0	NA	TTS (NM_006712)	TTS (NM_006712)	4859	NM_006712	10922		NM_006712	ENSG00000164896	FASTK	FAST	Fas activated serine/threonine kinase	protein-coding
138052	chr2	201433401	201433880	+	0	NA	intron (NM_015049, intron 1 of 15)	intron (NM_015049, intron 1 of 15)	17818	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
134912	chr2	149597401	149598070	+	0	NA	intron (NR_110240, intron 1 of 2)	intron (NR_110240, intron 1 of 2)	-9960	NM_015702	27249		NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	metabolism of cobalamin associated D	protein-coding
28493	chr10	49970421	49970680	+	0	NA	intron (NR_158661, intron 8 of 16)	SVA_C|Retroposon|SVA	16338	NR_145778	109617009		NR_145778	ENSG00000288603	SNORA74C-2	-	small nucleolar RNA, H/ACA box 74C-2	snoRNA
202589	chr6	158701121	158702330	+	0	NA	intron (NM_001318745, intron 3 of 14)	MLT1C|LTR|ERVL-MaLR	38322	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
56990	chr12	120559571	120559930	+	0	NA	intron (NM_001330474, intron 6 of 16)	AluSq2|SINE|Alu	21648	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
132587	chr2	106587451	106587750	+	0	NA	Intergenic	Intergenic	100236	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
204214	chr7	2520501	2521300	+	0	NA	intron (NM_001040168, intron 1 of 7)	intron (NM_001040168, intron 1 of 7)	1126	NM_001040167	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
177937	chr4	136838351	136838450	+	0	NA	intron (NR_149105, intron 3 of 3)	MSTA|LTR|ERVL-MaLR	-355356	NR_134640	729307		NR_134640		LINC02510	-	long intergenic non-protein coding RNA 2510	ncRNA
55171	chr12	100200401	100201680	+	0	NA	non-coding (NR_048568, exon 1 of 11)	non-coding (NR_048568, exon 1 of 11)	225	NR_048569	64431		NM_022496	ENSG00000075089	ACTR6	ARP6|CDA12|HSPC281|MSTP136|hARP6|hARPX	actin related protein 6	protein-coding
51179	chr12	50221551	50221800	+	0	NA	intron (NM_001113547, intron 1 of 7)	intron (NM_001113547, intron 1 of 7)	983	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
214490	chr7	150411371	150411730	+	0	NA	non-coding (NR_027237, exon 3 of 3)	non-coding (NR_027237, exon 3 of 3)	5798	NR_027237	728743		NM_001080852	ENSG00000284691	LOC728743	-	zinc finger domain-containing protein LOC728743	protein-coding
186536	chr5	138444501	138444700	+	0	NA	intron (NM_016606, intron 4 of 7)	intron (NM_016606, intron 4 of 7)	5543	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
186811	chr5	139383521	139383780	+	0	NA	promoter-TSS (NM_005847)	promoter-TSS (NM_005847)	-300	NM_152685	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
101709	chr17	68510551	68510650	+	0	NA	intron (NM_001278433, intron 1 of 10)	intron (NM_001278433, intron 1 of 10)	-1180	NM_212471	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
231707	chr9	131731371	131732180	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	5672	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
216943	chr8	22918251	22918850	+	0	NA	intron (NM_001363233, intron 3 of 6)	intron (NM_001363233, intron 3 of 6)	9364	NM_144962	157310		NM_144962	ENSG00000134020	PEBP4	CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4	phosphatidylethanolamine binding protein 4	protein-coding
210506	chr7	100182351	100183280	+	0	NA	exon (NM_001282716, exon 4 of 34)	exon (NM_001282716, exon 4 of 34)	4897	NM_001282718	10734		NM_012447	ENSG00000066923	STAG3	SA3|SPGF61	STAG3 cohesin complex component	protein-coding
9015	chr1	44727801	44728000	+	0	NA	Intergenic	L2a|LINE|L2	3268	NR_002755	26830		NR_002755	ENSG00000200169	RNU5D-1	RNU5D|U5DL|U5DS	RNA, U5D small nuclear 1	snRNA
123136	chr19	52046451	52046750	+	0	NA	intron (NM_001322284, intron 2 of 4)	L4_B_Mam|LINE|RTE-X	1961	NM_001322285	9668		NM_014650	ENSG00000256087	ZNF432	-	zinc finger protein 432	protein-coding
218252	chr8	42156971	42157330	+	0	NA	intron (NM_006803, intron 2 of 8)	MIRc|SINE|MIR	4087	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
194935	chr6	35182201	35182400	+	0	NA	Intergenic	CpG	-31656	NM_152753	222663		NM_152753	ENSG00000146197	SCUBE3	CEGF3|SSFSC2	signal peptide, CUB domain and EGF like domain containing 3	protein-coding
202204	chr6	156721151	156721250	+	0	NA	Intergenic	Intergenic	-54826	NM_001371656	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
91073	chr17	3038001	3038600	+	0	NA	TTS (NM_015085)	TTS (NM_015085)	25307	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
118561	chr19	36170251	36171100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18228	NM_001864	1346		NM_001864	ENSG00000161281	COX7A1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit 7A1	protein-coding
208060	chr7	56077051	56077350	+	0	NA	intron (NM_001366647, intron 5 of 8)	AluSx1|SINE|Alu	12914	NM_001366649	25870		NM_015411	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
223630	chr8	144329621	144329880	+	0	NA	TTS (NM_031309)	TTS (NM_031309)	-2898	NM_012079	8694		NM_012079	ENSG00000185000	DGAT1	ARAT|ARGP1|DGAT|DIAR7	diacylglycerol O-acyltransferase 1	protein-coding
69081	chr14	92038951	92041230	+	0	NA	promoter-TSS (NM_004239)	promoter-TSS (NM_004239)	-31	NM_001321851	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
215485	chr7	158351301	158351500	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	181413	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
191112	chr6	4023451	4024230	+	0	NA	intron (NR_146785, intron 1 of 20)	AluJb|SINE|Alu	2540	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
26419	chr10	17207701	17207900	+	0	NA	Intergenic	AluSz|SINE|Alu	-5729	NM_001351223	1787		NM_004412	ENSG00000107614	TRDMT1	DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1	tRNA aspartic acid methyltransferase 1	protein-coding
214083	chr7	143492001	143492200	+	0	NA	intron (NR_033897, intron 2 of 4)	intron (NR_033897, intron 2 of 4)	14227	NM_176883	259287		NM_176883	ENSG00000221855	TAS2R41	T2R41|T2R59	taste 2 receptor member 41	protein-coding
132652	chr2	108736301	108736500	+	0	NA	intron (NM_006267, intron 6 of 28)	intron (NM_006267, intron 6 of 28)	16918	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
75888	chr15	69755301	69756330	+	0	NA	Intergenic	Intergenic	-79419	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
211603	chr7	105861551	105861650	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	14985	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
137735	chr2	197808771	197809550	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	4567	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
38149	chr11	35485621	35486000	+	0	NA	intron (NM_015430, intron 3 of 11)	intron (NM_015430, intron 3 of 11)	39806	NM_015430	25891		NM_015430	ENSG00000149090	PAMR1	DKFZP586H2123|FP938|RAMP	peptidase domain containing associated with muscle regeneration 1	protein-coding
149286	chr21	28522071	28522230	+	0	NA	Intergenic	Intergenic	-17168	NR_026553	118421		NR_026552	ENSG00000226935	LINC00161	C21orf100|Linc-USP16|NCRNA00161	long intergenic non-protein coding RNA 161	ncRNA
73324	chr15	41935711	41936180	+	0	NA	intron (NM_139265, intron 3 of 5)	MLT1H1|LTR|ERVL-MaLR	14528	NR_120332	101928363		NR_120332	ENSG00000259883	EHD4-AS1	-	EHD4 antisense RNA 1	ncRNA
174470	chr4	39812361	39813300	+	0	NA	Intergenic	(TGTGTG)n|Simple_repeat|Simple_repeat	114694	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
34398	chr10	132383851	132384250	+	0	NA	Intergenic	Intergenic	-13150	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
91286	chr17	4143601	4145250	+	0	NA	intron (NM_144611, intron 1 of 3)	intron (NM_144611, intron 1 of 3)	728	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
237107	chrX	104167871	104168500	+	0	NA	intron (NM_207318, intron 1 of 5)	intron (NM_207318, intron 1 of 5)	1732	NM_207318	139231		NM_207318	ENSG00000123575	FAM199X	CXorf39	family with sequence similarity 199, X-linked	protein-coding
6201	chr1	27458821	27459350	+	0	NA	intron (NM_006990, intron 1 of 8)	AluSq2|SINE|Alu	31082	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
88488	chr16	85113821	85114080	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-1478	NM_001366920	339145		NM_198491	ENSG00000153789	CIBAR2	FAM92B	CBY1 interacting BAR domain containing 2	protein-coding
107109	chr18	35060121	35060980	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	19137	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
32812	chr10	109920051	109920730	+	0	NA	intron (NM_020383, intron 1 of 20)	L1MB8|LINE|L1	2856	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
132902	chr2	111401371	111401930	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	-80559	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
211953	chr7	112485751	112486050	+	0	NA	intron (NM_001134468, intron 2 of 3)	intron (NM_001134468, intron 2 of 3)	4909	NM_182597	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
71189	chr14	105056521	105057180	+	0	NA	intron (NM_001278694, intron 3 of 4)	intron (NM_001278694, intron 3 of 4)	8580	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
75181	chr15	64730151	64730730	+	0	NA	Intergenic	Intergenic	-27159	NM_002537	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
141699	chr2	241822401	241822600	+	0	NA	Intergenic	L1MEd|LINE|L1	11104	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
55711	chr12	108052371	108052530	+	0	NA	Intergenic	Intergenic	-76838	NM_014653	9671		NM_014653	ENSG00000075035	WSCD2	-	WSC domain containing 2	protein-coding
51719	chr12	53210201	53210580	+	0	NA	TTS (NM_001243731)	TTS (NM_001243731)	-3139	NM_000889	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
215618	chr7	159202871	159203700	+	0	NA	Intergenic	Intergenic	-58328	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
198182	chr6	96468701	96469100	+	0	NA	Intergenic	Intergenic	-52906	NM_015323	23376		NM_015323	ENSG00000014123	UFL1	KIAA0776|Maxer|NLBP|RCAD	UFM1 specific ligase 1	protein-coding
169144	chr3	156448351	156448530	+	0	NA	intron (NM_172160, intron 2 of 13)	intron (NM_172160, intron 2 of 13)	-1504	NR_046618	100874084		NR_046618	ENSG00000242370	KCNAB1-AS1	-	KCNAB1 antisense RNA 1	ncRNA
129329	chr2	68739671	68741000	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	4958	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
211704	chr7	106859071	106859230	+	0	NA	Intergenic	Intergenic	-6132	NM_001282427	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
170748	chr3	188358951	188360000	+	0	NA	intron (NM_001167671, intron 3 of 11)	intron (NM_001167671, intron 3 of 11)	146579	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
221751	chr8	127742921	127743850	+	0	NA	TTS (NM_002467)	TTS (NM_002467)	7154	NM_002467	4609		NM_002467	ENSG00000136997	MYC	MRTL|MYCC|bHLHe39|c-Myc	MYC proto-oncogene, bHLH transcription factor	protein-coding
197559	chr6	79605001	79605200	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-26229	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
207438	chr7	44562951	44563880	+	0	NA	Intergenic	Intergenic	11123	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
185117	chr5	119283251	119283350	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	14541	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
94739	chr17	30790351	30790850	+	0	NA	intron (NR_144394, intron 8 of 8)	intron (NR_144394, intron 8 of 8)	34092	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
114219	chr19	11452921	11453280	+	0	NA	3' UTR (NM_032281, exon 7 of 7)	3' UTR (NM_032281, exon 7 of 7)	-17318	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
154299	chr22	31917171	31917980	+	0	NA	Intergenic	Intergenic	20879	NM_001302819	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
117266	chr19	19457851	19458430	+	0	NA	intron (NM_001384522, intron 3 of 13)	intron (NM_001384522, intron 3 of 13)	23077	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
112584	chr19	6666251	6666550	+	0	NA	intron (NM_172014, intron 3 of 3)	AluJb|SINE|Alu	3758	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
36122	chr11	3100171	3100330	+	0	NA	exon (NM_001144063, exon 13 of 21)	exon (NM_001144063, exon 13 of 21)	-42827	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
100286	chr17	59704551	59705280	+	0	NA	intron (NM_001015509, intron 1 of 2)	AluSx1|SINE|Alu	2515	NM_016077	51651		NM_016077	ENSG00000141378	PTRH2	BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2	peptidyl-tRNA hydrolase 2	protein-coding
40477	chr11	64237071	64237800	+	0	NA	exon (NM_003377, exon 6 of 7)	exon (NM_003377, exon 6 of 7)	2851	NM_003377	7423		NM_003377	ENSG00000173511	VEGFB	VEGFL|VRF	vascular endothelial growth factor B	protein-coding
17558	chr1	156808601	156808950	+	0	NA	intron (NM_001161444, intron 7 of 7)	intron (NM_001161444, intron 7 of 7)	-6975	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
16494	chr1	154784671	154785430	+	0	NA	intron (NM_170782, intron 2 of 7)	intron (NM_170782, intron 2 of 7)	74826	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
82655	chr16	19410551	19410850	+	0	NA	promoter-TSS (NM_001105248)	promoter-TSS (NM_001105248)	-35	NM_001105248	79838		NM_024780	ENSG00000103534	TMC5	-	transmembrane channel like 5	protein-coding
102007	chr17	74778121	74778550	+	0	NA	intron (NM_017728, intron 2 of 9)	intron (NM_017728, intron 2 of 9)	1836	NM_017728	54868		NM_017728	ENSG00000109066	TMEM104	SLC38A12	transmembrane protein 104	protein-coding
164848	chr3	71045871	71046300	+	0	NA	intron (NM_001244810, intron 10 of 20)	(TCCT)n|Simple_repeat|Simple_repeat	18839	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
232009	chr9	133358371	133358630	+	0	NA	intron (NM_017503, intron 3 of 5)	intron (NM_017503, intron 3 of 5)	1950	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
106322	chr18	12929421	12930200	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-18174	NM_031216	81929		NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
148797	chr21	8236851	8237550	+	0	NA	intron (NR_003287, intron 1 of 2)	(CTCT)n|Simple_repeat|Simple_repeat	-12305	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
212928	chr7	130922351	130923000	+	0	NA	TTS (NR_109780)	TTS (NR_109780)	9211	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
21282	chr1	204418121	204419100	+	0	NA	Intergenic	L2c|LINE|L2	-6793	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
158467	chr22	50683601	50683850	+	0	NA	intron (NM_001372044, intron 10 of 23)	intron (NM_001372044, intron 10 of 23)	10902	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
139638	chr2	226215971	226216200	+	0	NA	Intergenic	Intergenic	73291	NR_046102	646736		NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
159006	chr3	10395551	10396230	+	0	NA	intron (NM_001353564, intron 6 of 20)	intron (NM_001353564, intron 6 of 20)	-1328	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
63599	chr14	20488651	20488950	+	0	NA	Intergenic	Intergenic	-15433	NM_001012975	338879		NM_001012975	ENSG00000182545	RNASE10	RAH1|RNASE9	ribonuclease A family member 10 (inactive)	protein-coding
94568	chr17	29623971	29624130	+	0	NA	Intergenic	Intergenic	-2627	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
65132	chr14	44966771	44967030	+	0	NA	intron (NR_131765, intron 1 of 19)	AluJr|SINE|Alu	4710	NM_001308120	23116		NM_015091	ENSG00000198718	TOGARAM1	FAM179B|JBTS37|KIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding
123713	chr19	55039921	55040380	+	0	NA	Intergenic	L1MB4|LINE|L1	-1886	NM_001256017	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
157218	chr22	43190351	43190700	+	0	NA	Intergenic	MER65C|LTR|ERV1	-3391	NM_015140	23170		NM_015140	ENSG00000100304	TTLL12	dJ526I14.2	tubulin tyrosine ligase like 12	protein-coding
68525	chr14	88977951	88978050	+	0	NA	Intergenic	Intergenic	153349	NM_001366535	123016		NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
117298	chr19	19491571	19491730	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	23898	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
129023	chr2	64888971	64889130	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-25419	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
230005	chr9	126940351	126940950	+	0	NA	intron (NM_001366400, intron 1 of 18)	AluYh3|SINE|Alu	-21575	NM_001190728	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
79032	chr16	69871	70130	+	0	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	2631	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
121032	chr19	45809771	45809930	+	0	NA	intron (NM_030785, intron 2 of 5)	intron (NM_030785, intron 2 of 5)	5458	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
199726	chr6	125751271	125751830	+	0	NA	intron (NM_012259, intron 1 of 4)	intron (NM_012259, intron 1 of 4)	1918	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
73968	chr15	51845571	51845730	+	0	NA	intron (NM_014547, intron 1 of 9)	AluJr|SINE|Alu	15997	NM_014547	29766		NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
111352	chr19	3669021	3669750	+	0	NA	intron (NM_001300849, intron 1 of 16)	intron (NM_001300849, intron 1 of 16)	31083	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
80556	chr16	2827771	2827930	+	0	NA	Intergenic	Intergenic	-2322	NM_145252	124220		NM_145252	ENSG00000162078	ZG16B	EECP|HRPE773|JCLN2|PAUF|PRO1567	zymogen granule protein 16B	protein-coding
143646	chr20	31860701	31862000	+	0	NA	3' UTR (NM_080611, exon 7 of 7)	3' UTR (NM_080611, exon 7 of 7)	8881	NM_177991	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
193016	chr6	28333871	28334230	+	0	NA	intron (NM_001243242, intron 1 of 3)	intron (NM_001243242, intron 1 of 3)	2084	NM_001243243	64288		NM_030899	ENSG00000235109	ZSCAN31	ZNF20-Lp|ZNF310P|ZNF323	zinc finger and SCAN domain containing 31	protein-coding
232303	chr9	134474501	134475480	+	0	NA	Intergenic	Intergenic	68430	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
128155	chr2	48444301	48444800	+	0	NA	intron (NM_001193475, intron 1 of 19)	intron (NM_001193475, intron 1 of 19)	3781	NM_001193475	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
177492	chr4	114036551	114036650	+	0	NA	Intergenic	Intergenic	-56953	NM_024590	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
200316	chr6	133701651	133701850	+	0	NA	intron (NR_109982, intron 4 of 8)	intron (NR_109982, intron 4 of 8)	-119397	NR_027030	154089		NM_153224		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
145161	chr20	38844651	38845300	+	0	NA	intron (NM_001172735, intron 2 of 9)	LTR33|LTR|ERVL	39278	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
120850	chr19	45519021	45520450	+	0	NA	intron (NM_003370, intron 3 of 12)	AluY|SINE|Alu	12256	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
214389	chr7	149779601	149780000	+	0	NA	intron (NR_163594, intron 9 of 102)	intron (NR_163594, intron 9 of 102)	3758	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
143990	chr20	32969751	32970300	+	0	NA	Intergenic	Intergenic	34408	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
81304	chr16	4689151	4689780	+	0	NA	non-coding (NR_102267, exon 15 of 15)	non-coding (NR_102267, exon 15 of 15)	-4228	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
12439	chr1	107056501	107057930	+	0	NA	exon (NM_018137, exon 1 of 1)	exon (NM_018137, exon 1 of 1)	541	NM_018137	55170		NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding
15893	chr1	151541951	151542250	+	0	NA	intron (NM_001126337, intron 1 of 11)	intron (NM_001126337, intron 1 of 11)	1791	NM_001301317	7286		NM_020127	ENSG00000143367	TUFT1	WHSF	tuftelin 1	protein-coding
172447	chr4	1978801	1979200	+	0	NA	3' UTR (NM_133331, exon 23 of 23)	3' UTR (NM_133331, exon 23 of 23)	4364	NR_003004	677770		NR_003004	ENSG00000249784	SCARNA22	ACA11	small Cajal body-specific RNA 22	ncRNA
161255	chr3	39254651	39255150	+	0	NA	Intergenic	Intergenic	25136	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
158838	chr3	9796101	9796300	+	0	NA	intron (NM_001198780, intron 1 of 5)	AluSx|SINE|Alu	3118	NM_001198780	10093		NM_005718	ENSG00000241553	ARPC4	ARC20|DEVLO|P20-ARC	actin related protein 2/3 complex subunit 4	protein-coding
54692	chr12	93419401	93420100	+	0	NA	intron (NM_003348, intron 1 of 3)	intron (NM_003348, intron 1 of 3)	22197	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
123614	chr19	54523251	54523750	+	0	NA	Intergenic	MIR|SINE|MIR	-9192	NR_104095	90011		NM_033206	ENSG00000290933	KIR3DX1	KIR3DL0|LENG12	killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)	pseudo
15922	chr1	151734971	151735380	+	0	NA	Intergenic	Intergenic	13653	NM_001144956	284485		NM_001144956	ENSG00000178796	RIIAD1	C1orf230|NCRNA00166	regulatory subunit of type II PKA R-subunit domain containing 1	protein-coding
188410	chr5	154074471	154074630	+	0	NA	Intergenic	AluJo|SINE|Alu	35583	NM_005927	4238		NM_005927	ENSG00000037749	MFAP3	-	microfibril associated protein 3	protein-coding
3634	chr1	16383901	16384100	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	16758	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
206923	chr7	38221521	38221880	+	0	NA	intron (NM_032016, intron 7 of 8)	L2|LINE|L2	43455	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
229344	chr9	120918651	120918950	+	0	NA	intron (NM_005658, intron 3 of 7)	intron (NM_005658, intron 3 of 7)	-4228	NM_001190947	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
134531	chr2	143667601	143668350	+	0	NA	intron (NM_018460, intron 12 of 13)	AluJb|SINE|Alu	-269092	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
165412	chr3	97968021	97968280	+	0	NA	intron (NM_001261829, intron 1 of 9)	intron (NM_001261829, intron 1 of 9)	4281	NM_153182	84864		NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
137869	chr2	200830651	200830750	+	0	NA	Intergenic	AluJr|SINE|Alu	18314	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
181480	chr5	42912201	42912700	+	0	NA	Intergenic	L1M5|LINE|L1	80883	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
175849	chr4	78936771	78937080	+	0	NA	intron (NR_146462, intron 1 of 6)	intron (NR_146462, intron 1 of 6)	2513	NR_146464	152559		NM_177453	ENSG00000163291	PAQR3	RKTG	progestin and adipoQ receptor family member 3	protein-coding
207867	chr7	50369351	50370150	+	0	NA	TTS (NM_001291847)	TTS (NM_001291847)	50702	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
34156	chr10	128066951	128067450	+	0	NA	intron (NM_001323354, intron 10 of 19)	intron (NM_001323354, intron 10 of 19)	-4775	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
210887	chr7	101168101	101168830	+	0	NA	Intergenic	Intergenic	-2896	NM_003378	7425		NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
153991	chr22	30391051	30391830	+	0	NA	Intergenic	Intergenic	-4029	NM_001017981	200312		NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
236518	chrX	72068251	72068630	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	24031	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
113911	chr19	10697201	10697400	+	0	NA	Intergenic	AluSp|SINE|Alu	-4139	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
221939	chr8	129888121	129888900	+	0	NA	intron (NM_001353311, intron 4 of 13)	L2a|LINE|L2	51301	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
233762	chrX	1400851	1401430	+	0	NA	intron (NR_026710, intron 1 of 3)	intron (NR_026710, intron 1 of 3)	609	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
134816	chr2	148529671	148530030	+	0	NA	Intergenic	Intergenic	-114901	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
103578	chr17	78694701	78694900	+	0	NA	intron (NM_001292019, intron 9 of 12)	intron (NM_001292019, intron 9 of 12)	22232	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
155160	chr22	37680871	37682030	+	0	NA	Intergenic	MIR3|SINE|MIR	-4893	NM_024313	79159		NM_024313	ENSG00000273899	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
87187	chr16	69384201	69384580	+	0	NA	intron (NM_005652, intron 3 of 9)	intron (NM_005652, intron 3 of 9)	1617	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
151971	chr22	19140471	19140630	+	0	NA	intron (NR_134304, intron 3 of 9)	intron (NR_134304, intron 3 of 9)	4101	NR_134304	8220		NM_022719	ENSG00000100056	ESS2	DGCR13|DGCR14|DGS-H|DGS-I|DGSH|DGSI|ES2|ESS-2|Es2el|bis1	ess-2 splicing factor homolog	protein-coding
200537	chr6	136255821	136256330	+	0	NA	TTS (NM_001077440)	TTS (NM_001077440)	-5764	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
130539	chr2	85659971	85660130	+	0	NA	intron (NM_000542, intron 10 of 10)	intron (NM_000542, intron 10 of 10)	8149	NM_001367281	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
101598	chr17	68103551	68103800	+	0	NA	intron (NR_027418, intron 2 of 5)	intron (NR_027418, intron 2 of 5)	2120	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
87389	chr16	70473701	70474100	+	0	NA	intron (NM_145059, intron 15 of 23)	L2b|LINE|L2	19305	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
58211	chr12	127083171	127083650	+	0	NA	Intergenic	Intergenic	-23013	NR_104646	101927592		NR_104646	ENSG00000249345	LINC02405	-	long intergenic non-protein coding RNA 2405	ncRNA
35000	chr11	529901	530100	+	0	NA	Intergenic	Intergenic	5567	NM_176795	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
196229	chr6	42814271	42814630	+	0	NA	intron (NM_001318819, intron 3 of 13)	(TA)n|Simple_repeat|Simple_repeat	-6606	NM_015349	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
103986	chr17	80026551	80026850	+	0	NA	intron (NM_019020, intron 1 of 11)	intron (NM_019020, intron 1 of 11)	9172	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
115142	chr19	14390951	14391500	+	0	NA	intron (NM_001784, intron 4 of 17)	intron (NM_001784, intron 4 of 17)	9781	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
28999	chr10	63387221	63387680	+	0	NA	intron (NM_001322258, intron 1 of 24)	L1M2|LINE|L1	-14402	NR_031566	100302150		NR_031566	ENSG00000221063	MIR1296	MIRN1296|hsa-mir-1296|mir-1296	microRNA 1296	ncRNA
63825	chr14	21471001	21471600	+	0	NA	intron (NM_032846, intron 3 of 7)	intron (NM_032846, intron 3 of 7)	5374	NM_001163380	84932		NM_032846	ENSG00000129472	RAB2B	-	RAB2B, member RAS oncogene family	protein-coding
219430	chr8	71843421	71844700	+	0	NA	promoter-TSS (NR_033651)	promoter-TSS (NR_033651)	-56	NR_033651	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
84263	chr16	30033221	30033580	+	0	NA	intron (NM_001352173, intron 2 of 5)	intron (NM_001352173, intron 2 of 5)	-2129	NM_031478	83723		NM_031478	ENSG00000149926	TLCD3B	CORD22|FAM57B|FP1188	TLC domain containing 3B	protein-coding
207361	chr7	44097171	44097530	+	0	NA	Intergenic	L2|LINE|L2	-6995	NM_001129	165		NM_001129	ENSG00000106624	AEBP1	ACLP	AE binding protein 1	protein-coding
50500	chr12	47805401	47805900	+	0	NA	intron (NR_160436, intron 1 of 25)	intron (NR_160436, intron 1 of 25)	14253	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
210381	chr7	99720621	99720880	+	0	NA	intron (NM_001256497, intron 3 of 14)	L1ME3Cz|LINE|L1	14446	NM_001256497	100861540		NM_001256497	ENSG00000282301	CYP3A7-CYP3A51P	CYP3A7|CYP3A7-3AP1|CYP3A7-CYP3AP1|CYP3A7.1L|CYPIIIA7	CYP3A7-CYP3A51P readthrough	protein-coding
2997	chr1	12044201	12044800	+	0	NA	Intergenic	AluSz|SINE|Alu	15342	NR_106787	102466982		NR_106787	ENSG00000276869	MIR6729	hsa-mir-6729	microRNA 6729	ncRNA
82722	chr16	20959551	20959650	+	0	NA	intron (NM_017539, intron 53 of 61)	AluJo|SINE|Alu	58338	NR_161432	57149		NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
770	chr1	1519201	1519400	+	0	NA	intron (NM_018188, intron 5 of 15)	AluSx3|SINE|Alu	6770	NM_001170536	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
30928	chr10	87216671	87216830	+	0	NA	Intergenic	Intergenic	-8698	NM_001099338	728118		NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
192931	chr6	27751021	27751280	+	0	NA	Intergenic	Intergenic	-10594	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
155019	chr22	37424071	37424630	+	0	NA	intron (NM_052906, intron 1 of 2)	intron (NM_052906, intron 1 of 2)	3120	NR_110512	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
33606	chr10	119540251	119540550	+	0	NA	intron (NM_001005339, intron 1 of 4)	AluJb|SINE|Alu	2319	NM_001005339	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
115099	chr19	14277871	14278230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-55693	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
23717	chr1	231915021	231915280	+	0	NA	intron (NM_001164541, intron 9 of 9)	MLT1J|LTR|ERVL-MaLR	-10684	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
22508	chr1	221777521	221779500	+	0	NA	Intergenic	Intergenic	-36334	NR_111940	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
186805	chr5	139379821	139380080	+	0	NA	intron (NM_152685, intron 7 of 14)	intron (NM_152685, intron 7 of 14)	3347	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
141970	chr20	1327351	1327750	+	0	NA	intron (NR_040047, intron 1 of 2)	intron (NR_040047, intron 1 of 2)	1589	NM_080489	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
184944	chr5	113006271	113006430	+	0	NA	intron (NM_001242377, intron 8 of 9)	L1MB4|LINE|L1	29552	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
165741	chr3	105690051	105690550	+	0	NA	intron (NM_001321806, intron 12 of 17)	intron (NM_001321806, intron 12 of 17)	177291	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
186661	chr5	138594171	138594400	+	0	NA	Intergenic	LTR78|LTR|ERV1	-18884	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
70140	chr14	100281321	100281780	+	0	NA	3' UTR (NM_003403, exon 5 of 5)	3' UTR (NM_003403, exon 5 of 5)	4193	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
8564	chr1	41358271	41358580	+	0	NA	Intergenic	Intergenic	-3009	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
73094	chr15	40952651	40954230	+	0	NA	promoter-TSS (NM_024111)	promoter-TSS (NM_024111)	-31	NM_001142776	79094		NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
5445	chr1	25607571	25607730	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-9141	NM_020379	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
190755	chr6	444721	445550	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	53383	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
135410	chr2	161077301	161078480	+	0	NA	Intergenic	L2|LINE|L2	-59065	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
91801	chr17	7031921	7032530	+	0	NA	Intergenic	MSTC-int|LTR|ERVL-MaLR	-3790	NM_201566	201232		NM_201566	ENSG00000174327	SLC16A13	MCT13	solute carrier family 16 member 13	protein-coding
95809	chr17	38740451	38740950	+	0	NA	intron (NM_001369614, intron 1 of 9)	AluYj4|SINE|Alu	5928	NM_001369615	7703		NM_007144	ENSG00000277258	PCGF2	MEL-18|RNF110|TPFS|ZNF144	polycomb group ring finger 2	protein-coding
91495	chr17	4907201	4907400	+	0	NA	Intergenic	AluY|SINE|Alu	-4202	NM_000080	1145		NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1A1|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|FIM1|FIMG|FIMG1|MGI|SCCMS	cholinergic receptor nicotinic epsilon subunit	protein-coding
59067	chr13	20796771	20797030	+	0	NA	exon (NM_022459, exon 17 of 23)	exon (NM_022459, exon 17 of 23)	-22939	NM_001318939	221143		NM_174928	ENSG00000150456	EEF1AKMT1	ESP13|N6AMT2|eEF1A-KMT	EEF1A lysine methyltransferase 1	protein-coding
89427	chr16	88937421	88937680	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	-1721	NR_168285	100129697		NM_001290330		LOC100129697	-	uncharacterized LOC100129697	ncRNA
26843	chr10	24726921	24727380	+	0	NA	Intergenic	AluSz|SINE|Alu	-3263	NM_001367447	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
112036	chr19	5125651	5126280	+	0	NA	intron (NM_015015, intron 11 of 22)	intron (NM_015015, intron 11 of 22)	156852	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
18914	chr1	168407721	168408300	+	0	NA	intron (NR_037851, intron 3 of 3)	L1MEg|LINE|L1	14646	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
215992	chr8	8885271	8885730	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	8130	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
49503	chr12	25326271	25326650	+	0	NA	Intergenic	Intergenic	-75531	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
34028	chr10	124716771	124716930	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	12822	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
202810	chr6	159655771	159655930	+	0	NA	Intergenic	L1PBa1|LINE|L1	37391	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
91108	chr17	3670021	3670280	+	0	NA	TTS (NM_031298)	TTS (NM_031298)	1338	NM_031298	83460		NM_031298	ENSG00000127774	EMC6	RAB5IFL|TMEM93	ER membrane protein complex subunit 6	protein-coding
10207	chr1	62175521	62175800	+	0	NA	Intergenic	Intergenic	-19189	NM_001164835	54596		NM_019079	ENSG00000240563	L1TD1	ECAT11	LINE1 type transposase domain containing 1	protein-coding
91460	chr17	4820621	4820880	+	0	NA	intron (NM_002663, intron 23 of 24)	AluYe5|SINE|Alu	-12590	NM_015716	50488		NM_015716	ENSG00000141503	MINK1	B55|MAP4K6|MEKKK 6|MINK|YSK2|ZC3	misshapen like kinase 1	protein-coding
122356	chr19	49337771	49338500	+	0	NA	intron (NM_001774, intron 5 of 7)	CpG	2729	NM_001040031	951		NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
117784	chr19	29811271	29813200	+	0	NA	intron (NM_001322262, intron 1 of 10)	CpG	244	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
30364	chr10	77876601	77876800	+	0	NA	intron (NM_004747, intron 1 of 31).2	SVA_F|Retroposon|SVA	50055	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
140290	chr2	232365071	232365830	+	0	NA	Intergenic	Intergenic	-13301	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
100764	chr17	63986451	63986550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11851	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
175876	chr4	80036201	80036400	+	0	NA	intron (NM_001145794, intron 7 of 15)	intron (NM_001145794, intron 7 of 15)	36929	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
235434	chrX	45848751	45848850	+	0	NA	intron (NR_125365, intron 2 of 2)	AluY|SINE|Alu	2690	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
162900	chr3	49398671	49399530	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluY|SINE|Alu	12876	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
192759	chr6	26445821	26446680	+	0	NA	intron (NM_197974, intron 5 of 9)	intron (NM_197974, intron 5 of 9)	5746	NM_001242803	10384		NM_006994	ENSG00000111801	BTN3A3	BTF3|BTN3.3	butyrophilin subfamily 3 member A3	protein-coding
46528	chr11	128458601	128458930	+	0	NA	TTS (NM_001330451)	TTS (NM_001330451)	63545	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
53746	chr12	68646071	68646630	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluSg|SINE|Alu	-18975	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
57544	chr12	122166301	122167400	+	0	NA	promoter-TSS (NM_152759)	promoter-TSS (NM_152759)	-869	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
104152	chr17	80391201	80391400	+	0	NA	intron (NM_001256071, intron 67 of 67)	AluSx1|SINE|Alu	-23867	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
9172	chr1	45591451	45592430	+	0	NA	intron (NM_001195193, intron 2 of 12)	AluJo|SINE|Alu	7899	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
149663	chr21	33560521	33561880	+	0	NA	TTS (NM_032195)	TTS (NM_032195)	10538	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
182218	chr5	56850801	56851000	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	35351	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
82214	chr16	15015671	15016050	+	0	NA	intron (NM_001324019, intron 8 of 22)	L1M5|LINE|L1	-5463	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
102834	chr17	76468171	76468680	+	0	NA	intron (NR_110548, intron 1 of 3)	intron (NR_110548, intron 1 of 3)	822	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
225245	chr9	34251751	34252150	+	0	NA	TTS (NM_194313)	TTS (NM_194313)	72907	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
162650	chr3	48845751	48846380	+	0	NA	intron (NM_004157, intron 1 of 10)	intron (NM_004157, intron 1 of 10)	1809	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
150291	chr21	41932271	41932630	+	0	NA	intron (NM_015500, intron 2 of 13)	MER21C|LTR|ERVL	-5747	NM_199050	25966		NM_015500	ENSG00000157617	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium dependent domain containing 2	protein-coding
110211	chr19	1749201	1750950	+	0	NA	Intergenic	CpG	-3431	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
146789	chr20	50924171	50924780	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-6509	NR_110007	101927631		NR_110007	ENSG00000259456	ADNP-AS1	-	ADNP antisense RNA 1	ncRNA
66943	chr14	65604551	65605300	+	0	NA	intron (NM_001371536, intron 3 of 11)	L1ME3Cz|LINE|L1	133823	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
57052	chr12	120876351	120876650	+	0	NA	intron (NM_139015, intron 1 of 10)	AluY|SINE|Alu	27858	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
132535	chr2	106163301	106163500	+	0	NA	intron (NR_165308, intron 4 of 14)	intron (NR_165308, intron 4 of 14)	-2763	NM_001377509	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
101566	chr17	68041151	68041930	+	0	NA	intron (NM_002266, intron 4 of 10)	AluSz6|SINE|Alu	5580	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
149764	chr21	34745571	34746030	+	0	NA	promoter-TSS (NR_038886)	promoter-TSS (NR_038886)	-25	NR_038885	100506385		NR_038885	ENSG00000234380	LINC01426	lincRNA-uc002yug.2	long intergenic non-protein coding RNA 1426	ncRNA
109290	chr19	553271	553430	+	0	NA	Intergenic	AluY|SINE|Alu	9297	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
138117	chr2	202287021	202287480	+	0	NA	intron (NM_015934, intron 5 of 14)	AluSx|SINE|Alu	-4067	NR_003694	100113392		NR_003694	ENSG00000271852	SNORD11B	-	small nucleolar RNA, C/D box 11B	snoRNA
208119	chr7	58818551	58818650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1368423	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
119414	chr19	40275401	40275600	+	0	NA	intron (NM_001243027, intron 1 of 13)	MIRb|SINE|MIR	7141	NR_030371	693226		NR_030371	ENSG00000207631	MIR641	MIRN641|hsa-mir-641|mir-641	microRNA 641	ncRNA
146617	chr20	50156351	50156950	+	0	NA	Intergenic	AluSc|SINE|Alu	-2852	NR_027889	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
159494	chr3	14203251	14203830	+	0	NA	Intergenic	MIR3|SINE|MIR	24723	NM_014463	27258		NM_014463	ENSG00000170860	LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
6987	chr1	31814751	31815080	+	0	NA	exon (NM_001281987, exon 2 of 16)	exon (NM_001281987, exon 2 of 16)	1136	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
184022	chr5	91313551	91313650	+	0	NA	intron (NR_103548, intron 2 of 4)	AluY|SINE|Alu	802	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
151308	chr21	45545551	45545980	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	-3325	NM_001205206	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
196047	chr6	42052751	42053250	+	0	NA	intron (NM_138572, intron 2 of 8)	intron (NM_138572, intron 2 of 8)	2476	NM_138572	129685		NM_138572	ENSG00000137413	TAF8	II|NEDMLHB|TAF|TAF(II)43|TAFII-43|TAFII43|TBN	TATA-box binding protein associated factor 8	protein-coding
143679	chr20	32050401	32050850	+	0	NA	Intergenic	5S|rRNA|rRNA	-1617	NM_001172129	3055		NM_002110	ENSG00000101336	HCK	AIPCV|JTK9|p59Hck|p61Hck	HCK proto-oncogene, Src family tyrosine kinase	protein-coding
177985	chr4	139175351	139175450	+	0	NA	intron (NM_001371324, intron 1 of 10)	intron (NM_001371324, intron 1 of 10)	1818	NM_001371339	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
71387	chr14	105511571	105513000	+	0	NA	Intergenic	L1MC4|LINE|L1	-14298	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
42511	chr11	70354101	70354500	+	0	NA	intron (NM_001378006, intron 18 of 31)	intron (NM_001378006, intron 18 of 31)	-44206	NM_138565	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
120782	chr19	45439421	45440540	+	0	NA	intron (NM_001369412, intron 1 of 9)	CpG	3326	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
76555	chr15	75211271	75211830	+	0	NA	3' UTR (NM_015492, exon 3 of 3)	3' UTR (NM_015492, exon 3 of 3)	9668	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
90594	chr17	1604801	1605200	+	0	NA	promoter-TSS (NM_001284499)	promoter-TSS (NM_001284499)	34	NM_001284499	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
100663	chr17	63737071	63737430	+	0	NA	intron (NM_001165970, intron 1 of 10)	AluSx|SINE|Alu	4549	NR_156741	92335		NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk	STE20 related adaptor alpha	protein-coding
39072	chr11	47983521	47984600	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	3501	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
117683	chr19	27775071	27775230	+	0	NA	Intergenic	Intergenic	-18281	NR_146735	101927151		NR_110687	ENSG00000267575	LINC02987	-	long intergenic non-protein coding RNA 2987	ncRNA
148542	chr20	64180551	64180850	+	0	NA	intron (NM_004535, intron 1 of 22)	intron (NM_004535, intron 1 of 22)	16248	NM_004535	4661		NM_004535	ENSG00000196132	MYT1	C20orf36|MTF1|MYTI|NZF2|PLPB1|ZC2H2C1|ZC2HC4A	myelin transcription factor 1	protein-coding
64341	chr14	24020001	24020280	+	0	NA	intron (NR_102687, intron 1 of 3).2	MER102a|DNA|hAT-Charlie	13056	NM_001277864	728635		NM_001082488		DHRS4L1	SDR25C4	dehydrogenase/reductase 4 like 1 (pseudogene)	pseudo
61376	chr13	51444121	51444530	+	0	NA	3' UTR (NM_001039938, exon 3 of 3)	3' UTR (NM_001039938, exon 3 of 3)	8711	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
131187	chr2	94956871	94957030	+	0	NA	Intergenic	Intergenic	-9608	NR_037597	442028		NR_037597	ENSG00000291025	LOC442028	-	uncharacterized LOC442028	ncRNA
201189	chr6	143248371	143248530	+	0	NA	intron (NM_001366352, intron 4 of 5)	intron (NM_001366352, intron 4 of 5)	83668	NM_001366361	51390		NM_016108	ENSG00000146416	AIG1	AIG-1|dJ95L4.1	androgen induced 1	protein-coding
38347	chr11	44573001	44573530	+	0	NA	intron (NM_002231, intron 1 of 9)	MIR|SINE|MIR	7602	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
25444	chr10	6588271	6588430	+	0	NA	Intergenic	Intergenic	-7704	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
155313	chr22	38202501	38203680	+	0	NA	promoter-TSS (NM_001161573)	promoter-TSS (NM_001161573)	70	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
115393	chr19	15272821	15273280	+	0	NA	exon (NM_001330384, exon 2 of 12)	exon (NM_001330384, exon 2 of 12)	7401	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
4958	chr1	23989301	23989500	+	0	NA	Intergenic	MIR3|SINE|MIR	-9073	NM_001191005	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
194502	chr6	33279171	33279330	+	0	NA	TTS (NM_003782).3	TTS (NM_003782).3	2127	NM_003782	8705		NM_003782	ENSG00000235863	B3GALT4	BETA3GALT4|GALT2|GALT4	beta-1,3-galactosyltransferase 4	protein-coding
68899	chr14	91346451	91346750	+	0	NA	intron (NM_001080414, intron 4 of 29)	intron (NM_001080414, intron 4 of 29)	71220	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
98618	chr17	47777871	47778030	+	0	NA	Intergenic	Intergenic	43844	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
23925	chr1	235077621	235078680	+	0	NA	Intergenic	Intergenic	-8332	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
77104	chr15	78927921	78928250	+	0	NA	intron (NM_001319137, intron 9 of 12)	intron (NM_001319137, intron 9 of 12)	16961	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
187573	chr5	142797201	142797670	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	26208	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
112262	chr19	5793101	5793530	+	0	NA	Intergenic	L2a|LINE|L2	-2152	NM_001161619	56931		NM_020175	ENSG00000141994	DUS3L	DUS3	dihydrouridine synthase 3 like	protein-coding
15420	chr1	150261101	150261300	+	0	NA	promoter-TSS (NR_145745)	promoter-TSS (NR_145745)	-494	NR_145745	109616989		NR_145745		SNORD13C	-	small nucleolar RNA, C/D box 13C	snoRNA
9212	chr1	45625471	45625780	+	0	NA	Intergenic	AluY|SINE|Alu	-1571	NM_001114938	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
20794	chr1	201114051	201115280	+	0	NA	3' UTR (NM_001270601, exon 1 of 1)	3' UTR (NM_001270601, exon 1 of 1)	707	NM_001270601	647219		NM_001270601	ENSG00000232237	ASCL5	ASH-5|AmeloD|bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding
8134	chr1	39269651	39270200	+	0	NA	intron (NM_012090, intron 5 of 92)	intron (NM_012090, intron 5 of 92)	-139148	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
222504	chr8	140509521	140509780	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1672	NM_017444	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
207848	chr7	50351851	50352750	+	0	NA	intron (NM_001291840, intron 2 of 2)	Tigger15a|DNA|TcMar-Tigger	33252	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
102050	chr17	74870851	74870950	+	0	NA	intron (NM_001258012, intron 2 of 11)	AluSz|SINE|Alu	2094	NR_047576	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
212551	chr7	128865801	128866400	+	0	NA	promoter-TSS (NM_001195150)	promoter-TSS (NM_001195150)	-230	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
53542	chr12	67331171	67331430	+	0	NA	Intergenic	(CTTTT)n|Simple_repeat|Simple_repeat	61942	NM_001329676	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
121784	chr19	47781351	47781950	+	0	NA	intron (NM_003009, intron 5 of 5)	intron (NM_003009, intron 5 of 5)	2947	NM_003009	6415		NM_003009	ENSG00000178980	SELENOW	SEPW1|selW	selenoprotein W	protein-coding
238662	chrX	154022071	154022900	+	0	NA	3' UTR (NM_001316337, exon 5 of 5)	3' UTR (NM_001316337, exon 5 of 5)	-2496	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
70834	chr14	103636571	103636900	+	0	NA	intron (NM_001130107, intron 1 of 15)	AluY|SINE|Alu	7547	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
142823	chr20	16804001	16804200	+	0	NA	Intergenic	Intergenic	55742	NM_020157	56914		NM_020157	ENSG00000125879	OTOR	FDP|MIAL1	otoraplin	protein-coding
215274	chr7	157010661	157011830	+	0	NA	promoter-TSS (NM_005515)	promoter-TSS (NM_005515)	388	NR_038835	645249		NR_038835	ENSG00000243479	MNX1-AS1	CCAT5|MAYA	MNX1 antisense RNA 1 (head to head)	ncRNA
164438	chr3	59386271	59386430	+	0	NA	Intergenic	Intergenic	272147	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
53054	chr12	57627071	57628100	+	0	NA	intron (NM_001478, intron 10 of 10)	CpG	5094	NM_001276468	2583		NM_001478	ENSG00000135454	B4GALNT1	GALGT|GALNACT|GalNAc-T|SPG26	beta-1,4-N-acetyl-galactosaminyltransferase 1	protein-coding
36304	chr11	3838771	3839900	+	0	NA	intron (NM_001665, intron 1 of 1)	intron (NM_001665, intron 1 of 1)	1624	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
7449	chr1	33038401	33038800	+	0	NA	Intergenic	Intergenic	-1689	NM_001319143	204		NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
27227	chr10	29318421	29318880	+	0	NA	Intergenic	Intergenic	29580	NM_032517	84569		NM_032517	ENSG00000120563	LYZL1	KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1	lysozyme like 1	protein-coding
89846	chr16	89593751	89594850	+	0	NA	intron (NM_153636, intron 13 of 14)	intron (NM_153636, intron 13 of 14)	18542	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
74917	chr15	63671221	63671680	+	0	NA	intron (NM_003922, intron 39 of 77)	intron (NM_003922, intron 39 of 77)	-70623	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
172468	chr4	2044701	2045900	+	0	NA	Intergenic	Intergenic	3305	NM_001141936	401115		NM_001141936	ENSG00000243449	NICOL1	C4orf48|CHR4_55|NICOL	NELL2 interacting cell ontogeny regulator 1	protein-coding
23209	chr1	227560201	227560400	+	0	NA	Intergenic	(CTCTTT)n|Simple_repeat|Simple_repeat	-3256	NM_001367909	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
173151	chr4	6678301	6678880	+	0	NA	Intergenic	Intergenic	4515	NR_015433								
128714	chr2	61760501	61761050	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	93285	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
101762	chr17	72725501	72726150	+	0	NA	intron (NM_001352691, intron 8 of 10)	intron (NM_001352691, intron 8 of 10)	-85353	NR_033876	400619		NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
124003	chr19	55458221	55458480	+	0	NA	intron (NM_024710, intron 1 of 5)	intron (NM_024710, intron 1 of 5)	3292	NM_001136201	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
196404	chr6	43361351	43361650	+	0	NA	intron (NM_014345, intron 2 of 9)	AluJr4|SINE|Alu	8147	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
223937	chr9	806501	806800	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-35047	NM_021951	1761		NM_021951	ENSG00000137090	DMRT1	CT154|DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
237150	chrX	107364751	107364850	+	0	NA	Intergenic	L1PA2|LINE|L1	-157650	NM_032428	84443		NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
125405	chr2	11692801	11693600	+	0	NA	intron (NM_001349207, intron 1 of 20)	intron (NM_001349207, intron 1 of 20)	15656	NM_001349208	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
231578	chr9	131515751	131516500	+	0	NA	intron (NR_148392, intron 13 of 20)	intron (NR_148392, intron 13 of 20)	13207	NM_001353196	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
14195	chr1	123175951	123176050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1656888	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
2152	chr1	8407571	8408230	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	15932	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
121683	chr19	47510821	47513350	+	0	NA	intron (NR_038456, intron 1 of 11)	intron (NR_038456, intron 1 of 11)	2978	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
141858	chr20	640771	640930	+	0	NA	Intergenic	Intergenic	12350	NM_080725	140809		NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
137656	chr2	197429651	197429750	+	0	NA	intron (NM_001005526, intron 1 of 4)	AluSx|SINE|Alu	5328	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
68656	chr14	90005101	90005500	+	0	NA	intron (NM_001008744, intron 13 of 15)	intron (NM_001008744, intron 13 of 15)	49373	NM_001008744	55775		NM_018319	ENSG00000042088	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
87681	chr16	74610921	74611380	+	0	NA	Intergenic	AluSx|SINE|Alu	-4036	NM_001145666	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
182120	chr5	56095951	56096050	+	0	NA	Intergenic	Intergenic	100833	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
120586	chr19	45005751	45006250	+	0	NA	intron (NM_006509, intron 2 of 10)	L2a|LINE|L2	4536	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
236740	chrX	78142551	78142850	+	0	NA	Intergenic	L1PREC2|LINE|L1	-3050	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
52317	chr12	54956071	54956630	+	0	NA	intron (NM_014796, intron 8 of 8)	intron (NM_014796, intron 8 of 8)	17382	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
148746	chr21	7656971	7657870	+	0	NA	Intergenic	Intergenic	34781	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
9681	chr1	52904771	52905330	+	0	NA	exon (NM_001198962, exon 5 of 8)	exon (NM_001198962, exon 5 of 8)	16690	NM_018281	55268		NM_018281	ENSG00000121310	ECHDC2	-	enoyl-CoA hydratase domain containing 2	protein-coding
128613	chr2	61174351	61174650	+	0	NA	Intergenic	AluSx|SINE|Alu	-2918	NR_152211	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
73102	chr15	41031621	41032000	+	0	NA	intron (NR_104038, intron 24 of 34)	intron (NR_104038, intron 24 of 34)	78339	NM_024111	79094		NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
162365	chr3	47849071	47849230	+	0	NA	promoter-TSS (NR_031595)	promoter-TSS (NR_031595)	-405	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
14408	chr1	144300951	144301450	+	0	NA	intron (NR_136328, intron 2 of 9)	AluJr|SINE|Alu	1341	NR_136328	101927429		NR_136328		KMT2CP1	-	lysine methyltransferase 2C pseudogene 1	pseudo
70017	chr14	100085471	100085700	+	0	NA	intron (NM_016337, intron 2 of 13)	intron (NM_016337, intron 2 of 13)	20163	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
80625	chr16	2977821	2978500	+	0	NA	intron (NM_001258451, intron 2 of 8)	L1M4b|LINE|L1	2286	NM_004203	9088		NM_004203	ENSG00000127564	PKMYT1	MYT1|PPP1R126	protein kinase, membrane associated tyrosine/threonine 1	protein-coding
14160	chr1	121238471	121238700	+	0	NA	intron (NM_001271872, intron 2 of 9)	L2b|LINE|L2	53610	NM_001271872	653464		NM_001271872	ENSG00000171943	SRGAP2C	SRGAP2P1	SLIT-ROBO Rho GTPase activating protein 2C	protein-coding
60213	chr13	40488351	40489380	+	0	NA	Intergenic	Intergenic	-7859	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
137906	chr2	200868301	200869200	+	0	NA	Intergenic	LTR38B|LTR|ERV1	-4092	NR_027856	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
174335	chr4	38682771	38683280	+	0	NA	intron (NM_016531, intron 2 of 5)	intron (NM_016531, intron 2 of 5)	-18397	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
194706	chr6	33710851	33712750	+	0	NA	promoter-TSS (NM_032340)	promoter-TSS (NM_032340)	-100	NM_032340	84300		NM_032340	ENSG00000137288	UQCC2	C6orf125|C6orf126|Cbp6|M19|MC3DN7|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
97150	chr17	42566721	42568780	+	0	NA	intron (NM_198205, intron 2 of 6)	intron (NM_198205, intron 2 of 6)	650	NM_198204	6945		NM_013383	ENSG00000108788	MLX	MAD7|MXD7|TCFL4|TF4|bHLHd13	MAX dimerization protein MLX	protein-coding
39963	chr11	62571271	62571950	+	0	NA	exon (NM_001404, exon 4 of 10)	exon (NM_001404, exon 4 of 10)	2281	NM_001404	1937		NM_001404	ENSG00000254772	EEF1G	EF1G|GIG35	eukaryotic translation elongation factor 1 gamma	protein-coding
209456	chr7	76459721	76459980	+	0	NA	Intergenic	Intergenic	-1805	NM_020892	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
160063	chr3	18661471	18661630	+	0	NA	Intergenic	L1PA7|LINE|L1	-215958	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
115077	chr19	14208901	14210580	+	0	NA	Intergenic	CpG	-3571	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
220169	chr8	95131151	95131950	+	0	NA	Intergenic	Intergenic	-2235	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
10719	chr1	75789121	75789750	+	0	NA	promoter-TSS (NR_002748)	promoter-TSS (NR_002748)	-42	NR_002748	26804		NR_002748	ENSG00000201487	SNORD45B	RNU45B|U45b	small nucleolar RNA, C/D box 45B	snoRNA
56560	chr12	117062901	117064250	+	0	NA	intron (NR_031766, intron 2 of 7)	intron (NR_031766, intron 2 of 7)	35841	NR_031766	54997		NM_017899	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
143697	chr20	32188821	32189080	+	0	NA	TTS (NR_002781)	TTS (NR_002781)	1410	NR_002781	128854		NM_178465	ENSG00000235217	TSPY26P	TSPYL3|bA392M18.1	testis specific protein Y-linked 26, pseudogene	pseudo
75687	chr15	67831521	67831800	+	0	NA	intron (NM_001365915, intron 5 of 8)	intron (NM_001365915, intron 5 of 8)	6151	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
239270	chrY	13488771	13488930	+	0	NA	Intergenic	L1PA8|LINE|L1	-8180	NR_047601	7404		NM_007125	ENSG00000183878	UTY	KDM6AL|KDM6C|UTY1	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	protein-coding
151645	chr22	16616051	16616150	+	0	NA	intron (NR_001591, intron 3 of 8)	intron (NR_001591, intron 3 of 8)	14189	NR_001591	387590		NR_001591	ENSG00000290418	TPTEP1	psiTPTE22	TPTE pseudogene 1	pseudo
158448	chr22	50619901	50622100	+	0	NA	Intergenic	Intergenic	7152	NM_000487	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
172837	chr4	3201601	3203100	+	0	NA	intron (NM_002111, intron 41 of 66)	intron (NM_002111, intron 41 of 66)	-42019	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
164867	chr3	71072751	71072850	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-7876	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
124309	chr19	58004371	58004530	+	0	NA	non-coding (NR_036508, exon 3 of 4)	non-coding (NR_036508, exon 3 of 4)	-1104	NM_025027	80095		NM_025027	ENSG00000166704	ZNF606	ZNF328	zinc finger protein 606	protein-coding
63070	chr13	113160371	113160530	+	0	NA	intron (NM_001256134, intron 3 of 8)	intron (NM_001256134, intron 3 of 8)	1796	NM_001256134	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
65676	chr14	52686701	52687300	+	0	NA	intron (NM_001382467, intron 1 of 14)	intron (NM_001382467, intron 1 of 14)	8558	NM_001382476	30001		NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
120807	chr19	45468701	45471000	+	0	NA	intron (NM_006732, intron 1 of 3)	intron (NM_006732, intron 1 of 3)	1854	NM_006732	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
196172	chr6	42569121	42570330	+	0	NA	intron (NM_001363705, intron 1 of 46)	intron (NM_001363705, intron 1 of 46)	5696	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
56595	chr12	118052101	118052300	+	0	NA	intron (NM_001278557, intron 2 of 8)	intron (NM_001278557, intron 2 of 8)	8979	NM_018639	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
64649	chr14	31417621	31418050	+	0	NA	intron (NM_015473, intron 1 of 35)	intron (NM_015473, intron 1 of 35)	2715	NM_015473	25938		NM_015473	ENSG00000129493	HEATR5A	C14orf125|p200b	HEAT repeat containing 5A	protein-coding
160369	chr3	27900121	27900950	+	0	NA	Intergenic	Intergenic	-66399	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
154026	chr22	30444671	30445600	+	0	NA	Intergenic	Intergenic	12449	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
44758	chr11	112086221	112087550	+	0	NA	promoter-TSS (NR_028383)	promoter-TSS (NR_028383)	12	NM_001276503	6392		NM_003002	ENSG00000204370	SDHD	CBT1|CII-4|CWS3|MC2DN3|PGL|PGL1|PPGL1|QPs3|SDH4|cybS	succinate dehydrogenase complex subunit D	protein-coding
157674	chr22	46286001	46286200	+	0	NA	intron (NM_017931, intron 9 of 13)	L1MB3|LINE|L1	10560	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
81122	chr16	4384451	4385100	+	0	NA	intron (NM_001351729, intron 9 of 27)	intron (NM_001351729, intron 9 of 27)	12927	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
175439	chr4	71141171	71141330	+	0	NA	Intergenic	L2a|LINE|L2	-45515	NM_001134742	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
92342	chr17	8166801	8167200	+	0	NA	Intergenic	Intergenic	-4052	NM_014232	6844		NM_014232	ENSG00000220205	VAMP2	NEDHAHM|SYB2|VAMP-2	vesicle associated membrane protein 2	protein-coding
205321	chr7	12389101	12389400	+	0	NA	exon (NM_001135924, exon 3 of 29)	exon (NM_001135924, exon 3 of 29)	14615	NM_001135924	221806		NM_174949	ENSG00000146530	VWDE	-	von Willebrand factor D and EGF domains	protein-coding
222165	chr8	132786671	132787300	+	0	NA	intron (NR_156424, intron 2 of 18)	intron (NR_156424, intron 2 of 18)	-10986	NM_001382397	137835		NM_144649	ENSG00000165071	TMEM71	-	transmembrane protein 71	protein-coding
170767	chr3	188552771	188552930	+	0	NA	intron (NR_164692, intron 5 of 9)	MLT1D|LTR|ERVL-MaLR	15816	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
32241	chr10	101836871	101837030	+	0	NA	intron (NM_173191, intron 1 of 9)	AluSg|SINE|Alu	2921	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
82526	chr16	18327021	18327350	+	0	NA	intron (NR_146336, intron 29 of 34).2	intron (NR_146336, intron 29 of 34).2	5477	NM_001282507	101059938		NM_001282507	ENSG00000214967	NPIPA7	NPIPA8	nuclear pore complex interacting protein family member A7	protein-coding
77092	chr15	78916771	78917330	+	0	NA	Intergenic	AluJb|SINE|Alu	27996	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
198205	chr6	97263721	97263850	+	0	NA	intron (NM_001350600, intron 7 of 23)	AluY|SINE|Alu	19431	NM_198468	253714		NM_198468	ENSG00000146263	MMS22L	C6orf167|dJ39B17.2	MMS22 like, DNA repair protein	protein-coding
16267	chr1	153992001	153992800	+	0	NA	TTS (NM_001349946)	TTS (NM_001349946)	1638	NM_001030	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
187240	chr5	141361371	141361730	+	0	NA	exon (NM_032096, exon 1 of 1)	exon (NM_032096, exon 1 of 1)	1414	NM_018923	56103		NM_018923	ENSG00000253910	PCDHGB2	PCDH-GAMMA-B2	protocadherin gamma subfamily B, 2	protein-coding
93517	chr17	19017971	19018450	+	0	NA	intron (NM_001282417, intron 11 of 14)	intron (NM_001282417, intron 11 of 14)	-13446	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
228730	chr9	109244501	109244800	+	0	NA	intron (NM_019114, intron 14 of 25)	intron (NM_019114, intron 14 of 25)	76314	NM_018424	54566		NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2|LULU2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
188829	chr5	159098971	159099520	+	0	NA	intron (NM_001364155, intron 1 of 14)	(CCG)n|Simple_repeat|Simple_repeat	535	NM_001364155	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
76448	chr15	74823751	74823850	+	0	NA	intron (NM_021819, intron 12 of 13)	intron (NM_021819, intron 12 of 13)	-2827	NM_001030005	594855		NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII|Nbla11589	complexin 3	protein-coding
41956	chr11	67319901	67320500	+	0	NA	intron (NR_024469, intron 1 of 3)	intron (NR_024469, intron 1 of 3)	2361	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
1576	chr1	3585721	3585980	+	0	NA	intron (NM_001409, intron 3 of 36)	intron (NM_001409, intron 3 of 36)	-25060	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
74725	chr15	63187521	63188100	+	0	NA	Intergenic	Intergenic	-1796	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
92708	chr17	14191601	14192250	+	0	NA	intron (NM_001303, intron 5 of 6)	intron (NM_001303, intron 5 of 6)	44937	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
170510	chr3	186413901	186414250	+	0	NA	Intergenic	Intergenic	-26270	NR_151709	107986164		NR_151708		LINC02020	-	long intergenic non-protein coding RNA 2020	ncRNA
172496	chr4	2248721	2249900	+	0	NA	TTS (NR_039964)	TTS (NR_039964)	846	NR_039964	100616358		NR_039964	ENSG00000284276	MIR4800	mir-4800	microRNA 4800	ncRNA
157773	chr22	46746621	46746880	+	0	NA	Intergenic	Intergenic	-8498	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
214632	chr7	150739471	150739650	+	0	NA	intron (NM_001303630, intron 3 of 4)	intron (NM_001303630, intron 3 of 4)	2212	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
80272	chr16	2233551	2234300	+	0	NA	exon (NM_001288776, exon 9 of 14)	exon (NM_001288776, exon 9 of 14)	-2519	NM_001374	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
123278	chr19	53539471	53539730	+	0	NA	intron (NM_001317113, intron 2 of 4)	intron (NM_001317113, intron 2 of 4)	812	NM_001253800	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
22346	chr1	214599271	214599580	+	0	NA	Intergenic	L1ME2|LINE|L1	-3770	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
144245	chr20	34509501	34509700	+	0	NA	3' UTR (NM_001257138, exon 24 of 24)	3' UTR (NM_001257138, exon 24 of 24)	-6002	NR_168136	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
190636	chr5	181216071	181216490	+	0	NA	Intergenic	AluSq2|SINE|Alu	6353	NR_039781	100616342		NR_039781	ENSG00000264732	MIR4638	mir-4638	microRNA 4638	ncRNA
121298	chr19	46730201	46730700	+	0	NA	intron (NM_001039877, intron 6 of 17)	L2b|LINE|L2	-13323	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
76626	chr15	75544471	75544630	+	0	NA	intron (NM_002833, intron 1 of 12)	AluJo|SINE|Alu	34765	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
61866	chr13	77022351	77022700	+	0	NA	intron (NM_012158, intron 1 of 4)	MER1B|DNA|hAT-Charlie	4634	NM_012158	26224		NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A|IDDSFAS	F-box and leucine rich repeat protein 3	protein-coding
220237	chr8	96647501	96647700	+	0	NA	intron (NM_016134, intron 1 of 7)	intron (NM_016134, intron 1 of 7)	2358	NM_016134	10404		NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
60335	chr13	40706471	40706830	+	0	NA	Intergenic	Intergenic	21237	NR_031723	100313896		NR_031723		MIR320D1	MIR320D-1|MIRN320D1|mir-320d-1	microRNA 320d-1	ncRNA
98034	chr17	45425001	45425450	+	0	NA	intron (NR_169601, intron 4 of 20)	intron (NR_169601, intron 4 of 20)	408	NR_169604	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
189002	chr5	168409751	168410280	+	0	NA	intron (NM_015238, intron 8 of 22)	intron (NM_015238, intron 8 of 22)	-76456	NM_002887	5917		NM_002887	ENSG00000113643	RARS1	ArgRS|DALRD1|HLD9|RARS	arginyl-tRNA synthetase 1	protein-coding
154277	chr22	31637251	31637650	+	0	NA	intron (NM_001326416, intron 3 of 10)	intron (NM_001326416, intron 3 of 10)	1073	NM_178022	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
191533	chr6	11412351	11412650	+	0	NA	Intergenic	Intergenic	-30152	NR_073131	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
26884	chr10	26216101	26216700	+	0	NA	promoter-TSS (NM_001134366)	promoter-TSS (NM_001134366)	93	NM_000818	2572		NM_000818	ENSG00000136750	GAD2	GAD65	glutamate decarboxylase 2	protein-coding
8296	chr1	40046551	40047080	+	0	NA	intron (NM_001350484, intron 2 of 13)	AluSx4|SINE|Alu	5789	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
37613	chr11	20155801	20156000	+	0	NA	TTS (NM_001029865)	TTS (NM_001029865)	4575	NM_001029865	120237		NM_001029865	ENSG00000109851	DBX1	HLX1	developing brain homeobox 1	protein-coding
32958	chr10	110443001	110443400	+	0	NA	Intergenic	Intergenic	-54707	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
148779	chr21	8210901	8213600	+	0	NA	promoter-TSS (NR_003285)	promoter-TSS (NR_003285)	-321	NR_003285	100008587		NR_003285		RNA5-8SN5	RN5-8S1|RNA5-8S5	RNA, 5.8S ribosomal N5	rRNA
214555	chr7	150562301	150562500	+	0	NA	Intergenic	HERVK14C-int|LTR|ERVK	-4970	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
127352	chr2	39128811	39129680	+	0	NA	Intergenic	L1MB2|LINE|L1	-4377	NM_001382394	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
2540	chr1	9726121	9726530	+	0	NA	intron (NM_001350234, intron 23 of 23)	AluSc8|SINE|Alu	34858	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
199522	chr6	118719151	118720250	+	0	NA	Intergenic	Intergenic	-9625	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
6936	chr1	31715471	31716480	+	0	NA	Intergenic	Intergenic	-11958	NM_001856	1307		NM_001856	ENSG00000084636	COL16A1	447AA|FP1572	collagen type XVI alpha 1 chain	protein-coding
80752	chr16	3153901	3154480	+	0	NA	Intergenic	Intergenic	9899	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
196068	chr6	42219051	42219350	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1339	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
152573	chr22	21119921	21120500	+	0	NA	intron (NR_037566, intron 5 of 5)	intron (NR_037566, intron 5 of 5)	17194	NR_037566	400892		NM_207474	ENSG00000291044	BCRP2	BCR-2|BCR2|BCRL2	BCR pseudogene 2	pseudo
546	chr1	1240701	1241580	+	0	NA	Intergenic	Intergenic	5582	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
117032	chr19	18925771	18926600	+	0	NA	intron (NM_019070, intron 9 of 12)	intron (NM_019070, intron 9 of 12)	6470	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
7714	chr1	36094721	36095180	+	0	NA	TTS (NM_005202)	TTS (NM_005202)	6058	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
51207	chr12	50528621	50529200	+	0	NA	intron (NM_173602, intron 1 of 37)	L2|LINE|L2	23925	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
48080	chr12	7159371	7159730	+	0	NA	TTS (NM_014718)	TTS (NM_014718)	-29103	NM_001351124	5830		NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
172331	chr4	1690251	1690550	+	0	NA	Intergenic	AluSp|SINE|Alu	-6087	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
49714	chr12	31205071	31205230	+	0	NA	Intergenic	Intergenic	-3915	NR_153414	144203		NM_173498	ENSG00000177359	OVOS2	-	alpha-2-macroglobulin like 1 pseudogene	pseudo
164361	chr3	58103901	58104700	+	0	NA	intron (NM_001164319, intron 10 of 44)	intron (NM_001164319, intron 10 of 44)	66335	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
132427	chr2	105829951	105831080	+	0	NA	intron (NM_001004722, intron 2 of 3)	L1MA5|LINE|L1	-21332	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
202429	chr6	157958171	157958330	+	0	NA	Intergenic	L1MEc|LINE|L1	-23613	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
133189	chr2	112995221	112995800	+	0	NA	Intergenic	Intergenic	-9949	NM_014440	27179		NM_014440	ENSG00000136694	IL36A	FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6	interleukin 36 alpha	protein-coding
203187	chr6	167182851	167183150	+	0	NA	Intergenic	Intergenic	-13020	NR_134592	105378123		NR_134592		LOC105378123	-	uncharacterized LOC105378123	ncRNA
219375	chr8	70379351	70379450	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	23990	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
17445	chr1	156683171	156683580	+	0	NA	Intergenic	Intergenic	-5968	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
49675	chr12	29552371	29552630	+	0	NA	intron (NM_175861, intron 10 of 17)	intron (NM_175861, intron 10 of 17)	-52807	NM_001353179	341350		NM_183378	ENSG00000187950	OVCH1	OVCH	ovochymase 1	protein-coding
5750	chr1	26477551	26477650	+	0	NA	TTS (NM_005517)	TTS (NM_005517)	5160	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
178260	chr4	143556701	143557100	+	0	NA	3' UTR (NM_003601, exon 24 of 24)	3' UTR (NM_003601, exon 24 of 24)	-2572	NR_003675	441046		NM_001011539	ENSG00000251600	GUSBP5	GYPELOC441046	GUSB pseudogene 5	pseudo
172004	chr4	960001	960600	+	0	NA	3' UTR (NM_001347, exon 23 of 23)	3' UTR (NM_001347, exon 23 of 23)	13269	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
147121	chr20	54063871	54064580	+	0	NA	intron (NM_001366296, intron 1 of 10)	MER5B|DNA|hAT-Charlie	4260	NR_039913	100616225		NR_039913	ENSG00000265595	MIR4756	-	microRNA 4756	ncRNA
219840	chr8	81834751	81835050	+	0	NA	intron (NR_145472, intron 2 of 6)	THE1B-int|LTR|ERVL-MaLR	7285	NR_145473	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
11500	chr1	90842371	90842530	+	0	NA	intron (NR_147931, intron 1 of 2)	intron (NR_147931, intron 1 of 2)	-6289	NR_147932	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
157120	chr22	42648551	42650030	+	0	NA	intron (NM_000398, intron 1 of 8)	CpG	102	NM_000398	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
98817	chr17	48358321	48358580	+	0	NA	intron (NM_001075099, intron 3 of 12)	intron (NM_001075099, intron 3 of 12)	64103	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
217939	chr8	38104921	38106280	+	0	NA	promoter-TSS (NM_001105214)	promoter-TSS (NM_001105214)	71	NM_004674	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
205827	chr7	24812351	24813180	+	0	NA	intron (NM_015550, intron 19 of 22)	intron (NM_015550, intron 19 of 22)	-54826	NM_004403	1687		NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
135829	chr2	170507301	170507900	+	0	NA	intron (NR_045682, intron 28 of 35)	AluSz|SINE|Alu	-156657	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
168198	chr3	141192021	141192680	+	0	NA	Intergenic	Intergenic	-39475	NM_152282	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
120034	chr19	41959101	41960600	+	0	NA	promoter-TSS (NM_006423)	promoter-TSS (NM_006423)	-529	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
30874	chr10	86770251	86770650	+	0	NA	intron (NM_004329, intron 1 of 12)	intron (NM_004329, intron 1 of 12)	13831	NM_004329	657		NM_004329	ENSG00000107779	BMPR1A	10q23del|ACVRLK3|ALK-3|ALK3|BMPR-1A|CD292|SKR5	bone morphogenetic protein receptor type 1A	protein-coding
120301	chr19	43472771	43473080	+	0	NA	Intergenic	AluSz|SINE|Alu	-7317	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
110354	chr19	1891621	1892100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6364	NM_031213	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
141677	chr2	241801321	241801580	+	0	NA	intron (NM_022134, intron 2 of 3)	MER49|LTR|ERV1	-7743	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
228366	chr9	99093721	99093980	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-11263	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233566	chrX	285171	285530	+	0	NA	intron (NR_163416, intron 2 of 7)	intron (NR_163416, intron 2 of 7)	1872	NM_001370373	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
62298	chr13	98994571	98996200	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-17321	NM_001130050	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
44278	chr11	102293501	102294680	+	0	NA	Intergenic	L1PA8|LINE|L1	-23394	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
210702	chr7	100578851	100579230	+	0	NA	intron (NM_001289934, intron 4 of 17)	intron (NM_001289934, intron 4 of 17)	-3821	NM_001289933								
182674	chr5	67309801	67310000	+	0	NA	Intergenic	AluY|SINE|Alu	-113101	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
77322	chr15	82468251	82469430	+	0	NA	Intergenic	Intergenic	-23971	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
234056	chrX	7085221	7085480	+	0	NA	intron (NM_001178136, intron 2 of 3)	intron (NM_001178136, intron 2 of 3)	-61940	NM_001320750	412		NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase	protein-coding
58842	chr12	132885301	132885500	+	0	NA	intron (NM_018223, intron 2 of 17)	AluY|SINE|Alu	2205	NM_001161346	55743		NM_018223	ENSG00000072609	CHFR	RNF116|RNF196	checkpoint with forkhead and ring finger domains	protein-coding
238916	chrX	154728821	154729200	+	0	NA	intron (NR_104114, intron 1 of 8)	L1MD2|LINE|L1	22067	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
227603	chr9	92717671	92718500	+	0	NA	intron (NM_001003800, intron 5 of 6)	intron (NM_001003800, intron 5 of 6)	46748	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
4362	chr1	20711251	20711750	+	0	NA	intron (NM_020816, intron 3 of 14)	intron (NM_020816, intron 3 of 14)	6507	NM_020816	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
146910	chr20	51561501	51561700	+	0	NA	intron (NM_001258292, intron 1 of 9)	intron (NM_001258292, intron 1 of 9)	1239	NM_001258294	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
200425	chr6	134940901	134941250	+	0	NA	intron (NM_170771, intron 3 of 5)	intron (NM_170771, intron 3 of 5)	9026	NM_170771	64577		NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding
85604	chr16	53539371	53539730	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-36246	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
224161	chr9	4980071	4980230	+	0	NA	Intergenic	Intergenic	-4936	NM_001322195	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
126694	chr2	30151701	30152100	+	0	NA	intron (NM_001127400, intron 2 of 3)	intron (NM_001127400, intron 2 of 3)	4893	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
97411	chr17	43396271	43396630	+	0	NA	Intergenic	MIR|SINE|MIR	-2543	NM_001661	379		NM_001661	ENSG00000175906	ARL4D	ARF4L	ADP ribosylation factor like GTPase 4D	protein-coding
195695	chr6	38673821	38674100	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	29185	NM_006708	2739		NM_006708	ENSG00000124767	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
24539	chr1	244849121	244850550	+	0	NA	TTS (NM_004501)	TTS (NM_004501)	4382	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
168166	chr3	139758321	139758780	+	0	NA	Intergenic	AluSx|SINE|Alu	-80500	NM_178177	349565		NM_178177	ENSG00000163864	NMNAT3	FKSG76|PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
74652	chr15	60906421	60906680	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	224981	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
91962	chr17	7387971	7388130	+	0	NA	intron (NM_001251902, intron 10 of 12).2	intron (NM_001251902, intron 10 of 12).2	6475	NM_020360	57048		NM_020360	ENSG00000187838	PLSCR3	-	phospholipid scramblase 3	protein-coding
197385	chr6	73494001	73494380	+	0	NA	intron (NM_133645, intron 11 of 12)	AluSq2|SINE|Alu	24248	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
205545	chr7	20238871	20239030	+	0	NA	Intergenic	Intergenic	21373	NR_134569	100506098		NR_134567	ENSG00000233834	GIRGL	MACC1-DT	glutamine insufficiency regulator of glutaminase lncRNA	ncRNA
231986	chr9	133334001	133334400	+	0	NA	intron (NM_001278942, intron 2 of 4).2	intron (NM_001278942, intron 2 of 4).2	1988	NR_103874	6838		NM_006753	ENSG00000148296	SURF6	RRP14	surfeit 6	protein-coding
25483	chr10	6958871	6959050	+	0	NA	Intergenic	Intergenic	179362	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
227953	chr9	94783101	94783380	+	0	NA	intron (NM_001193329, intron 2 of 15)	intron (NM_001193329, intron 2 of 15)	23591	NM_001193329	84909		NM_032823	ENSG00000148120	AOPEP	AP-O|APO|C90RF3|C9orf3|DYT31|ONPEP	aminopeptidase O (putative)	protein-coding
72789	chr15	40034571	40034950	+	0	NA	TTS (NM_003134)	TTS (NM_003134)	4421	NM_003134	6727		NM_003134	ENSG00000140319	SRP14	ALURBP	signal recognition particle 14	protein-coding
52119	chr12	54198021	54198680	+	0	NA	Intergenic	AluY|SINE|Alu	-9356	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
24768	chr1	248849801	248851000	+	0	NA	TTS (NM_024836)	TTS (NM_024836)	8685	NM_001350073	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
220010	chr8	90479051	90479430	+	0	NA	Intergenic	Intergenic	126823	NR_104062	101937451		NR_104062	ENSG00000253799	LINC01030	-	long intergenic non-protein coding RNA 1030	ncRNA
116991	chr19	18890821	18892000	+	0	NA	intron (NM_021267, intron 2 of 7)	intron (NM_021267, intron 2 of 7)	4748	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
233598	chrX	327721	328180	+	0	NA	Intergenic	CpG	8805	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
228398	chr9	99137121	99137380	+	0	NA	intron (NM_004612, intron 3 of 8)	intron (NM_004612, intron 3 of 8)	32137	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
156911	chr22	42270201	42271250	+	0	NA	promoter-TSS (NM_181492).3	promoter-TSS (NM_181492).3	-72	NM_181492	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
120978	chr19	45719551	45720450	+	0	NA	intron (NM_001329633, intron 1 of 1)	intron (NM_001329633, intron 1 of 1)	3496	NM_001329634	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
12087	chr1	99784101	99784380	+	0	NA	Intergenic	Intergenic	-17605	NM_001361041	391059		NM_001013660	ENSG00000156869	FRRS1	SDFR2|SDR2	ferric chelate reductase 1	protein-coding
115226	chr19	14501321	14502000	+	0	NA	Intergenic	AluSx|SINE|Alu	-5511	NM_202494	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
216141	chr8	11470751	11471250	+	0	NA	Intergenic	Intergenic	-4247	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
56829	chr12	120227951	120229000	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	21688	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
162607	chr3	48701651	48701750	+	0	NA	intron (NM_016291, intron 1 of 5)	AluSx1|SINE|Alu	15521	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
129590	chr2	70080871	70081200	+	0	NA	intron (NR_033872, intron 4 of 10)	AluJo|SINE|Alu	5980	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
121266	chr19	46698221	46698480	+	0	NA	intron (NM_001079881, intron 8 of 18)	AluSx|SINE|Alu	11004	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
179672	chr4	190019021	190019750	+	0	NA	Intergenic	CpG	7871	NM_001005217	448831		NM_001005217	ENSG00000205097	FRG2	FRG2A	FSHD region gene 2	protein-coding
49222	chr12	19049071	19049250	+	0	NA	Intergenic	AluJr|SINE|Alu	-80573	NM_019012	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
235844	chrX	49910401	49910630	+	0	NA	Intergenic	L2|LINE|L2	-12081	NM_001272102	1184		NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENT1|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	chloride voltage-gated channel 5	protein-coding
126793	chr2	30325551	30326050	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-20846	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
13048	chr1	111335221	111335830	+	0	NA	Intergenic	L1PA3|LINE|L1	-11035	NR_125338	128344		NM_181643	ENSG00000173947	CIMAP3	C1orf88|PIFO|pitchfork	ciliary microtubule associated protein 3	protein-coding
57583	chr12	122357601	122357800	+	0	NA	intron (NM_001247997, intron 5 of 25)	SVA_D|Retroposon|SVA	-37842	NR_045382	100507066		NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
1826	chr1	6246061	6246230	+	0	NA	TTS (NM_001024598)	TTS (NM_001024598)	1966	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
227704	chr9	93026501	93027480	+	0	NA	intron (NM_001369951, intron 14 of 17)	intron (NM_001369951, intron 14 of 17)	-12046	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
142241	chr20	3122271	3122430	+	0	NA	exon (NM_014948, exon 3 of 5)	exon (NM_014948, exon 3 of 5)	15439	NR_038395	100134015		NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
190114	chr5	177961371	177961630	+	0	NA	Intergenic	Intergenic	21973	NR_149047	100128340		NR_149047		LOC100128340	-	uncharacterized LOC100128340	ncRNA
217751	chr8	30809421	30809680	+	0	NA	intron (NM_001009552, intron 1 of 6)	intron (NM_001009552, intron 1 of 6)	3268	NM_001009552	5516		NM_004156	ENSG00000104695	PPP2CB	PP2Abeta|PP2CB	protein phosphatase 2 catalytic subunit beta	protein-coding
213065	chr7	131073621	131074780	+	0	NA	intron (NR_109852, intron 2 of 5)	MIR|SINE|MIR	32830	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
182773	chr5	68367901	68368130	+	0	NA	Intergenic	Intergenic	75438	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
130728	chr2	86765571	86765730	+	0	NA	intron (NM_022780, intron 5 of 8)	intron (NM_022780, intron 5 of 8)	25263	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
162957	chr3	49670851	49670950	+	0	NA	3' UTR (NM_003458, exon 12 of 12)	3' UTR (NM_003458, exon 12 of 12)	-3451	NM_001640	327		NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
152240	chr22	20180221	20180650	+	0	NA	Intergenic	Intergenic	24483	NR_038460	284865		NR_038460	ENSG00000249923	LINC02891	lnc-RTN4R-1	long intergenic non-protein coding RNA 2891	ncRNA
63463	chr13	114135821	114136480	+	0	NA	Intergenic	Intergenic	-3527	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
21966	chr1	208541521	208541780	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-187038	NR_146914	105372893		NR_146914	ENSG00000232812	LINC01717	-	long intergenic non-protein coding RNA 1717	ncRNA
102444	chr17	75689301	75690600	+	0	NA	intron (NR_126036, intron 3 of 9)	intron (NR_126036, intron 3 of 9)	22612	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
66984	chr14	66610121	66610530	+	0	NA	intron (NM_020806, intron 1 of 22)	intron (NM_020806, intron 1 of 22)	102178	NM_001377516	10243		NM_020806	ENSG00000171723	GPHN	GEPH|GPH|GPHRYN|HKPX1|MOCODC	gephyrin	protein-coding
196096	chr6	42340171	42340800	+	0	NA	intron (NM_033502, intron 3 of 17)	intron (NM_033502, intron 3 of 17)	111566	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
237509	chrX	120005421	120005500	+	0	NA	Intergenic	L1MA4A|LINE|L1	10091	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
107507	chr18	47928271	47929050	+	0	NA	intron (NM_001135937, intron 1 of 9)	intron (NM_001135937, intron 1 of 9)	1999	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
146089	chr20	47576621	47577100	+	0	NA	intron (NM_181659, intron 1 of 22)	intron (NM_181659, intron 1 of 22)	74973	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
98859	chr17	48478121	48478780	+	0	NA	Intergenic	Intergenic	33617	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
168578	chr3	149009271	149010450	+	0	NA	intron (NM_001184721, intron 5 of 5)	intron (NM_001184721, intron 5 of 5)	18320	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
189381	chr5	172715971	172716230	+	0	NA	Intergenic	Intergenic	-39403	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
60042	chr13	32736701	32737800	+	0	NA	intron (NM_015032, intron 21 of 34)	L1MEg|LINE|L1	150798	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
178362	chr4	146241471	146241630	+	0	NA	Intergenic	Intergenic	27012	NM_001354631	345051		NM_001354631	ENSG00000250673	REELD1	-	reeler domain containing 1	protein-coding
3084	chr1	12191171	12192080	+	0	NA	promoter-TSS (NR_039775)	promoter-TSS (NR_039775)	-88	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
175125	chr4	55184671	55184850	+	0	NA	Intergenic	Intergenic	-59165	NM_002253	3791		NM_002253	ENSG00000128052	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor	protein-coding
286	chr1	942411	943850	+	0	NA	intron (NM_001385641, intron 11 of 13)	intron (NM_001385641, intron 11 of 13)	16126	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
29983	chr10	73742471	73742830	+	0	NA	Intergenic	AluSc5|SINE|Alu	-1722	NM_004922	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
26610	chr10	22323301	22323780	+	0	NA	intron (NM_005180, intron 1 of 9)	intron (NM_005180, intron 1 of 9)	2441	NM_005180	648		NM_005180	ENSG00000168283	BMI1	FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1	BMI1 proto-oncogene, polycomb ring finger	protein-coding
60554	chr13	41479671	41480550	+	0	NA	Intergenic	L1PA7|LINE|L1	22560	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
182891	chr5	70052421	70052730	+	0	NA	intron (NM_022874, intron 1 of 7)	intron (NM_022874, intron 1 of 7)	2906	NM_000344	6606		NM_000344	ENSG00000172062	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
71797	chr15	21724951	21725800	+	0	NA	Intergenic	Intergenic	-7068	NR_135695	102724760		NR_135695		LOC102724760	-	immunoglobulin heavy variable 1/OR15-1 pseudogene	pseudo
173885	chr4	24564571	24564880	+	0	NA	intron (NM_001358, intron 3 of 13)	intron (NM_001358, intron 3 of 13)	19829	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
43947	chr11	93615301	93615680	+	0	NA	Intergenic	Intergenic	-46192	NM_033395	85459		NM_033395	ENSG00000166004	CEP295	KIAA1731|SCKL11	centrosomal protein 295	protein-coding
208336	chr7	66393071	66393430	+	0	NA	intron (NR_026873, intron 3 of 4)	SVA_E|Retroposon|SVA	7158	NR_026873	285908		NM_181722	ENSG00000179406	LINC00174	NCRNA00174	long intergenic non-protein coding RNA 174	ncRNA
192059	chr6	16599571	16599730	+	0	NA	intron (NM_000332, intron 4 of 8)	AluSc5|SINE|Alu	160534	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
126871	chr2	32039151	32040190	+	0	NA	5' UTR (NM_032574, exon 1 of 5)	5' UTR (NM_032574, exon 1 of 5)	135	NM_001321209	84661		NM_032574	ENSG00000162961	DPY30	Cps25|HDPY-30|Saf19	dpy-30 histone methyltransferase complex regulatory subunit	protein-coding
180430	chr5	10440951	10442400	+	0	NA	promoter-TSS (NM_001201466)	promoter-TSS (NM_001201466)	176	NR_102746	100505845		NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
21837	chr1	207346551	207348200	+	0	NA	intron (NM_001114752, intron 10 of 10)	AluY|SINE|Alu	25697	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
211837	chr7	108523271	108523980	+	0	NA	intron (NM_001256011, intron 1 of 10)	MER84|LTR|ERV1	2510	NM_001256007	50640		NM_015723	ENSG00000135241	PNPLA8	IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma	patatin like phospholipase domain containing 8	protein-coding
100064	chr17	58166071	58166230	+	0	NA	Intergenic	Intergenic	-3506	NM_001004707	124538		NM_001004707	ENSG00000255713	OR4D2	BC2009|OR17-24	olfactory receptor family 4 subfamily D member 2	protein-coding
220989	chr8	115522401	115522900	+	0	NA	intron (NM_001282903, intron 5 of 6)	LTR37-int|LTR|ERV1	145363	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
110898	chr19	2722751	2723050	+	0	NA	Intergenic	Intergenic	-1528	NM_145173	148252		NM_145173	ENSG00000176490	DIRAS1	Di-Ras1|GBTS1|RIG	DIRAS family GTPase 1	protein-coding
150818	chr21	43973501	43973700	+	0	NA	intron (NM_020132, intron 7 of 9)	CpG	-38709	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
117084	chr19	19120301	19120930	+	0	NA	intron (NM_017814, intron 11 of 11)	intron (NM_017814, intron 11 of 11)	17863	NM_017814	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
15091	chr1	148521521	148524580	+	0	NA	Intergenic	Intergenic	-39748	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
11099	chr1	85465171	85465330	+	0	NA	promoter-TSS (NM_012137)	promoter-TSS (NM_012137)	-91	NM_012137	23576		NM_012137	ENSG00000153904	DDAH1	DDAH|DDAH-1|DDAHI|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding
42988	chr11	73957451	73958200	+	0	NA	intron (NM_153614, intron 1 of 7)	LTR16B1|LTR|ERVL	6799	NM_001377263	374407		NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
77174	chr15	80090871	80091180	+	0	NA	intron (NM_001242912, intron 2 of 6)	intron (NM_001242912, intron 2 of 6)	-7391	NM_001242919	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
211496	chr7	105215151	105215450	+	0	NA	intron (NM_001350741, intron 2 of 16)	L1MB8|LINE|L1	53777	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
21014	chr1	202887321	202887680	+	0	NA	intron (NM_002871, intron 1 of 1)	AluSx|SINE|Alu	1649	NM_002871	5877		NM_002871	ENSG00000183155	RABIF	MSS4|RASGFR3|RASGRF3	RAB interacting factor	protein-coding
64942	chr14	35812551	35812850	+	0	NA	Intergenic	L1MC3|LINE|L1	-3405	NM_014990	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
57685	chr12	122842601	122842800	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	7243	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
418	chr1	1080771	1081930	+	0	NA	TTS (NM_001330306)	TTS (NM_001330306)	-7044	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
152193	chr22	20109771	20110500	+	0	NA	3' UTR (NM_001190326, exon 13 of 13)	3' UTR (NM_001190326, exon 13 of 13)	4616	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
112113	chr19	5590551	5591630	+	0	NA	intron (NM_014649, intron 17 of 20)	intron (NM_014649, intron 17 of 20)	-23056	NR_027064								
130269	chr2	84867101	84867300	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	13884	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
200267	chr6	132612351	132612850	+	0	NA	Intergenic	Intergenic	-3298	NR_028511	9288		NM_014627	ENSG00000290584	TAAR3P	GPR57|GPR58|TAAR2|TAAR3	trace amine associated receptor 3, pseudogene	pseudo
61306	chr13	50257571	50258480	+	0	NA	intron (NR_109974, intron 2 of 6)	LTR50|LTR|ERVL	86007	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
136481	chr2	177220351	177220650	+	0	NA	non-coding (NR_138470, exon 11 of 12)	non-coding (NR_138470, exon 11 of 12)	7706	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
38050	chr11	35165281	35167090	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	3235	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
217287	chr8	27365021	27365280	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	39586	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
161662	chr3	43332951	43333450	+	0	NA	intron (NM_017719, intron 4 of 6)	AluY|SINE|Alu	18762	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
185519	chr5	131330601	131331180	+	0	NA	intron (NM_001375633, intron 2 of 5)	AluJb|SINE|Alu	66837	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
127250	chr2	38693451	38694100	+	0	NA	intron (NM_138801, intron 4 of 6)	MIR|SINE|MIR	27661	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
83240	chr16	23863301	23864480	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	27907	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
39002	chr11	47716821	47718900	+	0	NA	intron (NM_015308, intron 16 of 16)	AluSp|SINE|Alu	-2491	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
156209	chr22	40327101	40328230	+	0	NA	3' UTR (NM_001162501, exon 23 of 23)	3' UTR (NM_001162501, exon 23 of 23)	-18835	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
197157	chr6	59564671	59565230	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1603504	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
120082	chr19	42092021	42092630	+	0	NA	intron (NM_001207026, intron 12 of 12)	intron (NM_001207026, intron 12 of 12)	16159	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
42239	chr11	68112451	68112550	+	0	NA	intron (NM_212469, intron 1 of 10)	AluSq2|SINE|Alu	8888	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
113424	chr19	9782651	9783600	+	0	NA	intron (NM_001353800, intron 1 of 6)	AluJb|SINE|Alu	3058	NM_001353800	162993		NM_001077624	ENSG00000196605	ZNF846	-	zinc finger protein 846	protein-coding
234635	chrX	19904751	19905080	+	0	NA	Intergenic	Intergenic	-17315	NM_001353892	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
184722	chr5	109411791	109412580	+	0	NA	Intergenic	Intergenic	-2211	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
196747	chr6	45421601	45422300	+	0	NA	promoter-TSS (NM_001369405)	promoter-TSS (NM_001369405)	-325	NM_001369405	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
50621	chr12	48687971	48688580	+	0	NA	TTS (NM_001277842)	TTS (NM_001277842)	-6037	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
6980	chr1	31793971	31794330	+	0	NA	exon (NM_001281988, exon 10 of 15)	exon (NM_001281988, exon 10 of 15)	21901	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
48637	chr12	10393421	10393750	+	0	NA	intron (NM_001199805, intron 5 of 12)	intron (NM_001199805, intron 5 of 12)	-3544	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
149064	chr21	15534521	15534780	+	0	NA	Intergenic	LTR50|LTR|ERVL	-195284	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
165041	chr3	71430851	71431480	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	110924	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
58768	chr12	132707251	132708180	+	0	NA	Intergenic	Intergenic	-3127	NM_001170544	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
11127	chr1	86501901	86502950	+	0	NA	Intergenic	Intergenic	33498	NM_001285	1179		NM_001285	ENSG00000016490	CLCA1	CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1	chloride channel accessory 1	protein-coding
225428	chr9	35069971	35070530	+	0	NA	intron (NM_007126, intron 1 of 16)	intron (NM_007126, intron 1 of 16)	2058	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
90228	chr17	580771	580930	+	0	NA	intron (NM_018289, intron 12 of 17)	intron (NM_018289, intron 12 of 17)	133989	NM_018289	55275		NM_018289	ENSG00000141252	VPS53	HCCS1|PCH2E|hVps53L|pp13624	VPS53 subunit of GARP complex	protein-coding
22578	chr1	222772621	222773180	+	0	NA	Intergenic	L1MEj|LINE|L1	33216	NM_001324080	400823		NM_207468	ENSG00000197520	FAM177B	-	family with sequence similarity 177 member B	protein-coding
218665	chr8	57920571	57920790	+	0	NA	Intergenic	L1MCc|LINE|L1	-57678	NR_130934	100505477		NR_130934	ENSG00000205293	LINC01602	T1560	long intergenic non-protein coding RNA 1602	ncRNA
155719	chr22	39125751	39126050	+	0	NA	Intergenic	MIR|SINE|MIR	26780	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
33676	chr10	119892121	119893600	+	0	NA	exon (NM_007190, exon 1 of 19)	exon (NM_007190, exon 1 of 19)	130	NM_007190	11196		NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A|iPLA1A|iPLA1beta	SEC23 interacting protein	protein-coding
115799	chr19	16382221	16383930	+	0	NA	intron (NM_021235, intron 21 of 22)	intron (NM_021235, intron 21 of 22)	58249	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
211468	chr7	105099121	105099580	+	0	NA	intron (NM_182931, intron 15 of 26)	MIR3|SINE|MIR	85145	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
203355	chr6	170300651	170300950	+	0	NA	intron (NM_001286380, intron 1 of 10)	THE1C-int|LTR|ERVL-MaLR	5479	NM_001286380	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
2990	chr1	12017401	12017850	+	0	NA	Intergenic	AluSp|SINE|Alu	-1873	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
154522	chr22	36079251	36079350	+	0	NA	Intergenic	Intergenic	-50476	NM_001082579	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
37515	chr11	18579051	18579500	+	0	NA	intron (NM_001261382, intron 1 of 10)	MIRb|SINE|MIR	243	NM_001261385	55293		NM_018314	ENSG00000151116	UEVLD	ATTP|UEV3	UEV and lactate/malate dehyrogenase domains	protein-coding
101236	chr17	66194221	66195350	+	0	NA	Intergenic	AluY|SINE|Alu	-2652	NM_001199165	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
50570	chr12	48189301	48190000	+	0	NA	Intergenic	Intergenic	6006	NM_001013635	387856		NM_001013635	ENSG00000177875	CCDC184	C12orf68	coiled-coil domain containing 184	protein-coding
132265	chr2	104448001	104448200	+	0	NA	intron (NR_015399, intron 1 of 3)	intron (NR_015399, intron 1 of 3)	13753	NR_015399	150568		NR_015399	ENSG00000235597	LINC01102	-	long intergenic non-protein coding RNA 1102	ncRNA
229676	chr9	124494271	124494830	+	0	NA	intron (NM_004959, intron 4 of 6)	intron (NM_004959, intron 4 of 6)	12849	NM_004959	2516		NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1	nuclear receptor subfamily 5 group A member 1	protein-coding
191328	chr6	7081801	7082000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-25843	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
1433	chr1	2591651	2592180	+	0	NA	TTS (NR_036637).2	TTS (NR_036637).2	5138	NM_001195741	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
61455	chr13	52054541	52054650	+	0	NA	intron (NM_001365552, intron 22 of 23)	L1PA3|LINE|L1	29904	NM_021645	9724		NM_021645	ENSG00000253797	UTP14C	2700066J21Rik|KIAA0266|UTP14B	UTP14C small subunit processome component	protein-coding
129170	chr2	68153501	68153700	+	0	NA	intron (NR_046234, intron 1 of 6)	MER5B|DNA|hAT-Charlie	3927	NM_001256476	116143		NM_138458	ENSG00000243667	DNAAF10	WDR92	dynein axonemal assembly factor 10	protein-coding
24842	chr10	395751	395850	+	0	NA	intron (NM_014974, intron 10 of 36)	intron (NM_014974, intron 10 of 36)	215806	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
171551	chr3	196866451	196866750	+	0	NA	Intergenic	AluY|SINE|Alu	-1256	NM_001308045	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
152342	chr22	20428901	20430040	+	0	NA	intron (NM_153334, intron 8 of 10)	CpG-18790	8355	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
220548	chr8	100705751	100706950	+	0	NA	intron (NM_002568, intron 11 of 14)	AluJo|SINE|Alu	-3326	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
199277	chr6	111868571	111868730	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	4421	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
105975	chr18	5455651	5455950	+	0	NA	intron (NM_001384691, intron 3 of 20)	intron (NM_001384691, intron 3 of 20)	65579	NM_001384684	23136		NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1 like 3	protein-coding
58539	chr12	132238401	132239550	+	0	NA	intron (NM_001122636, intron 6 of 10)	MER113|DNA|hAT-Charlie	-32947	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
35070	chr11	608601	609280	+	0	NA	exon (NM_001286581, exon 14 of 18).2	exon (NM_001286581, exon 14 of 18).2	7010	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
69721	chr14	98209721	98210680	+	0	NA	Intergenic	Intergenic	-232076	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
86591	chr16	67249971	67250550	+	0	NA	intron (NM_001323972, intron 1 of 14)	intron (NM_001323972, intron 1 of 14)	1281	NM_004594	6553		NM_004594	ENSG00000135740	SLC9A5	NHE5	solute carrier family 9 member A5	protein-coding
117317	chr19	19508971	19509480	+	0	NA	TTS (NM_001384511)	TTS (NM_001384511)	6323	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
157397	chr22	44755751	44756050	+	0	NA	intron (NM_181335, intron 1 of 11)	MIR|SINE|MIR	3325	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
204131	chr7	2349571	2349730	+	0	NA	Intergenic	AluSz|SINE|Alu	-4436	NM_001362792	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
46294	chr11	124873701	124873900	+	0	NA	exon (NM_022370, exon 11 of 28)	exon (NM_022370, exon 11 of 28)	-2382	NR_163409	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
10277	chr1	64826451	64827380	+	0	NA	intron (NM_001366165, intron 11 of 11)	L2a|LINE|L2	81840	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
213449	chr7	138749371	138749530	+	0	NA	intron (NM_130840, intron 10 of 20)	MIRc|SINE|MIR	24587	NM_130841	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
91178	chr17	3847471	3847730	+	0	NA	Intergenic	MIRb|SINE|MIR	-1354	NM_001114118	55421		NM_018553	ENSG00000074356	NCBP3	C17orf85|ELG|HSA277841	nuclear cap binding subunit 3	protein-coding
52157	chr12	54280301	54281830	+	0	NA	promoter-TSS (NM_012117)	promoter-TSS (NM_012117)	339	NR_135167	3178		NM_002136	ENSG00000135486	HNRNPA1	ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|MPD3|UP 1|hnRNP A1|hnRNP-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding
233178	chr9	137191351	137192350	+	0	NA	3' UTR (NM_001128228, exon 4 of 4)	3' UTR (NM_001128228, exon 4 of 4)	3174	NM_003731	8636		NM_003731	ENSG00000176101	SSNA1	N14|NA-14|NA14	SS nuclear autoantigen 1	protein-coding
49573	chr12	26945601	26945800	+	0	NA	intron (NM_001171888, intron 1 of 4)	AluSq2|SINE|Alu	7230	NM_015633	26127		NM_015633	ENSG00000111790	FGFR1OP2	HSPC123-like|WIT3.0	FGFR1 oncogene partner 2	protein-coding
61937	chr13	78604901	78605900	+	0	NA	non-coding (NR_047001, exon 4 of 6)	non-coding (NR_047001, exon 4 of 6)	-1848	NM_006237	5457		NM_006237	ENSG00000152192	POU4F1	ATITHS|BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
106118	chr18	9186201	9187100	+	0	NA	intron (NM_001204056, intron 2 of 11)	intron (NM_001204056, intron 2 of 11)	49087	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
146383	chr20	49284871	49285580	+	0	NA	intron (NR_003604, intron 4 of 4)	HERVIP10B3-int|LTR|ERV1	4542	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
112736	chr19	7349741	7351280	+	0	NA	intron (NM_001367823, intron 1 of 28)	intron (NM_001367823, intron 1 of 28)	1573	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
97310	chr17	43237201	43237630	+	0	NA	Intergenic	AluSx|SINE|Alu	2696	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
94846	chr17	31493901	31495630	+	0	NA	intron (NM_001346748, intron 1 of 12)	AluJr|SINE|Alu	6657	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
91871	chr17	7241751	7244300	+	0	NA	promoter-TSS (NM_007278)	promoter-TSS (NM_007278)	-576	NM_007278	11337		NM_007278	ENSG00000170296	GABARAP	ATG8A|GABARAP-a|MM46	GABA type A receptor-associated protein	protein-coding
95879	chr17	38873521	38874200	+	0	NA	intron (NM_006148, intron 1 of 6)	intron (NM_006148, intron 1 of 6)	3802	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
190055	chr5	177591801	177592800	+	0	NA	promoter-TSS (NM_017510)	promoter-TSS (NM_017510)	97	NM_017510	54732		NM_017510	ENSG00000184840	TMED9	GMP25|HSGP25L2G|p24a2|p24alpha2|p25	transmembrane p24 trafficking protein 9	protein-coding
86262	chr16	58493901	58494300	+	0	NA	intron (NM_022910, intron 2 of 15)	intron (NM_022910, intron 2 of 15)	-6043	NR_040072	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
87799	chr16	75471751	75472050	+	0	NA	TTS (NM_021615)	TTS (NM_021615)	-7163	NM_001304998	124491		NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
192353	chr6	24524801	24525000	+	0	NA	intron (NM_170740, intron 8 of 10)	MER5B|DNA|hAT-Charlie	29931	NM_001368954	7915		NM_001080	ENSG00000112294	ALDH5A1	SSADH|SSDH	aldehyde dehydrogenase 5 family member A1	protein-coding
143374	chr20	26324271	26324430	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-115117	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
110866	chr19	2620271	2621330	+	0	NA	intron (NM_052847, intron 2 of 4)	AluSx|SINE|Alu	-9915	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
155687	chr22	39074821	39075430	+	0	NA	Intergenic	MER49|LTR|ERV1	-1880	NM_001349437	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
107886	chr18	56649071	56649430	+	0	NA	Intergenic	Intergenic	-2109	NM_015285	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
218801	chr8	59040671	59040830	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	78397	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
228854	chr9	112319371	112319530	+	0	NA	intron (NM_001375918, intron 1 of 13)	L1MA8|LINE|L1	13576	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
12630	chr1	109161671	109162800	+	0	NA	intron (NM_020775, intron 2 of 21)	intron (NM_020775, intron 2 of 21)	-24314	NM_001284353	57535		NM_020775	ENSG00000116299	ELAPOR1	EIG121|KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein-coding
222985	chr8	143231471	143231830	+	0	NA	Intergenic	L1MD1|LINE|L1	-15289	NM_001271156	286128		NM_173832	ENSG00000181638	ZFP41	ZNF753|zfp-41	ZFP41 zinc finger protein	protein-coding
69883	chr14	99342351	99342450	+	0	NA	Intergenic	AluJb|SINE|Alu	-70203	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
141394	chr2	240833801	240835250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13122	NM_001379653	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
193716	chr6	31192121	31192830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5285	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
117536	chr19	20662501	20662700	+	0	NA	Intergenic	Intergenic	-1004	NM_145297	199777		NM_145297	ENSG00000188171	ZNF626	-	zinc finger protein 626	protein-coding
149408	chr21	31180021	31180800	+	0	NA	intron (NM_001353694, intron 15 of 27)	MER58A|DNA|hAT-Charlie	-19470	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
70059	chr14	100138501	100138980	+	0	NA	intron (NM_016337, intron 11 of 13)	intron (NM_016337, intron 11 of 13)	20905	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
72691	chr15	38563051	38563230	+	0	NA	intron (NM_001128602, intron 1 of 15)	intron (NM_001128602, intron 1 of 15)	1674	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
184895	chr5	112860751	112862300	+	0	NA	intron (NM_001204196, intron 1 of 3)	CpG	238	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
199026	chr6	111256871	111257200	+	0	NA	Intergenic	Intergenic	-2304	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
117811	chr19	29946101	29946330	+	0	NA	intron (NR_045557, intron 1 of 9)	intron (NR_045557, intron 1 of 9)	3976	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
157891	chr22	49752121	49752380	+	0	NA	Intergenic	Intergenic	72081	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
203967	chr7	1565271	1565430	+	0	NA	Intergenic	Intergenic	4682	NM_032302	84262		NM_032302	ENSG00000157778	PSMG3	C7orf48|PAC3	proteasome assembly chaperone 3	protein-coding
81	chr1	295951	296950	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-89853	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
121732	chr19	47722501	47722730	+	0	NA	intron (NM_014601, intron 3 of 5)	AluSq|SINE|Alu	9193	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
133969	chr2	130704551	130704730	+	0	NA	Intergenic	Intergenic	-24430	NM_207364	344561		NM_207364	ENSG00000173302	GPR148	BTR|PGR6	G protein-coupled receptor 148	protein-coding
230705	chr9	128771071	128772600	+	0	NA	promoter-TSS (NM_001375959)	promoter-TSS (NM_001375959)	92	NM_006336	10444		NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related cell cycle regulator	protein-coding
10757	chr1	76901251	76901350	+	0	NA	intron (NM_001320274, intron 2 of 2)	intron (NM_001320274, intron 2 of 2)	33820	NM_030965	81849		NM_030965	ENSG00000117069	ST6GALNAC5	SIAT7-E|SIAT7E|ST6GalNAcV	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
129723	chr2	70899251	70899830	+	0	NA	Intergenic	Intergenic	-1036	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
56693	chr12	120046321	120046580	+	0	NA	intron (NR_147894, intron 3 of 8)	MIR|SINE|MIR	56606	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
231198	chr9	129935121	129935980	+	0	NA	intron (NM_001363755, intron 6 of 15)	AluSc8|SINE|Alu	65945	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
126520	chr2	28449871	28450580	+	0	NA	Intergenic	Intergenic	-45835	NM_153021	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
200139	chr6	130264601	130264800	+	0	NA	intron (NM_001258275, intron 2 of 13)	Harlequin-int|LTR|ERV1	-41749	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
218307	chr8	42543171	42543630	+	0	NA	intron (NM_001363186, intron 1 of 3)	MamRTE1|LINE|RTE-BovB	-1446	NM_006749	6575		NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC2|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
189506	chr5	173246401	173246600	+	0	NA	Intergenic	Intergenic	-11294	NM_004387	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
130137	chr2	74836271	74836930	+	0	NA	intron (NM_001371525, intron 1 of 17)	intron (NM_001371525, intron 1 of 17)	1430	NM_001371525	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
147890	chr20	62876401	62877780	+	0	NA	TTS (NM_033081)	TTS (NM_033081)	5813	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
9108	chr1	45306251	45306630	+	0	NA	TTS (NR_024270)	TTS (NR_024270)	2530	NR_024270	400752		NR_024270	ENSG00000281912	LINC01144	-	long intergenic non-protein coding RNA 1144	ncRNA
201806	chr6	150006721	150007880	+	0	NA	Intergenic	Intergenic	-2156	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
176459	chr4	89304221	89304550	+	0	NA	intron (NM_198281, intron 1 of 1)	MER112|DNA|hAT-Charlie	3415	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
123013	chr19	51098451	51099500	+	0	NA	exon (NM_145232, exon 3 of 3)	exon (NM_145232, exon 3 of 3)	9434	NM_145232	90353		NM_145232	ENSG00000142544	CTU1	ATPBD3|NCS6	cytosolic thiouridylase subunit 1	protein-coding
52359	chr12	55642701	55643000	+	0	NA	Intergenic	Intergenic	5958	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
53839	chr12	69580321	69580780	+	0	NA	TTS (NM_001278351)	TTS (NM_001278351)	-4173	NR_037476	100500868		NR_037476	ENSG00000283677	MIR3913-2	mir-3913-2	microRNA 3913-2	ncRNA
62216	chr13	98482551	98483250	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	39225	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
37134	chr11	13346321	13346580	+	0	NA	intron (NM_001351821, intron 3 of 19)	intron (NM_001351821, intron 3 of 19)	68660	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
233062	chr9	137076951	137078580	+	0	NA	exon (NM_207309, exon 1 of 9)	exon (NM_207309, exon 1 of 9)	248	NM_207309	91373		NM_207309	ENSG00000197355	UAP1L1	-	UDP-N-acetylglucosamine pyrophosphorylase 1 like 1	protein-coding
232631	chr9	136453351	136454030	+	0	NA	intron (NM_014866, intron 21 of 31)	intron (NM_014866, intron 21 of 31)	-13845	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
112360	chr19	5963951	5964600	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	13865	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
139973	chr2	230885951	230886250	+	0	NA	promoter-TSS (NR_038238)	promoter-TSS (NR_038238)	-446	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
95661	chr17	38255921	38256600	+	0	NA	intron (NR_036750, intron 1 of 11)	intron (NR_036750, intron 1 of 11)	989	NR_036750	440434		NR_036750	ENSG00000291088	NPEPPSP1	NPEPPSL1	NPEPPS pseudogene 1	pseudo
91669	chr17	5535321	5535830	+	0	NA	intron (NM_033006, intron 7 of 15)	L2b|LINE|L2	-34569	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
100408	chr17	60435721	60436250	+	0	NA	Intergenic	Intergenic	13496	NM_181707	124773		NM_181707	ENSG00000141371	CHCT1	C17orf64	CHD1 helical C-terminal domain containing 1	protein-coding
74959	chr15	63819521	63819780	+	0	NA	intron (NM_003922, intron 1 of 77)	intron (NM_003922, intron 1 of 77)	14298	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
131948	chr2	99337101	99338380	+	0	NA	intron (NM_015904, intron 1 of 23)	CpG-16344	351	NM_015904	9669		NM_015904	ENSG00000158417	EIF5B	IF2	eukaryotic translation initiation factor 5B	protein-coding
13184	chr1	112505051	112505150	+	0	NA	intron (NM_004185, intron 2 of 5)	intron (NM_004185, intron 2 of 5)	-3865	NM_024494	7482		NM_004185	ENSG00000134245	WNT2B	WNT13	Wnt family member 2B	protein-coding
118231	chr19	35206351	35206900	+	0	NA	Intergenic	Intergenic	22100	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
119921	chr19	41753071	41753520	+	0	NA	Intergenic	Intergenic	-2235	NM_002483	4680		NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA|NCA-50/90	CEA cell adhesion molecule 6	protein-coding
187193	chr5	140660671	140661230	+	0	NA	intron (NM_006083, intron 16 of 19)	intron (NM_006083, intron 16 of 19)	-3849	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
15321	chr1	149883171	149883930	+	0	NA	TTS (NM_003528)	TTS (NM_003528)	3132	NM_003528	8349		NM_003528	ENSG00000184678	H2BC21	GL105|H2B|H2B-GL105|H2B.1|H2BE|H2BFQ|H2BGL105|H2BQ|HIST2H2BE	H2B clustered histone 21	protein-coding
36864	chr11	10452021	10452430	+	0	NA	intron (NM_000480, intron 1 of 14)	intron (NM_000480, intron 1 of 14)	1534	NM_000480	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
11329	chr1	89488001	89488200	+	0	NA	Intergenic	LTR47A2|LTR|ERVL	-36729	NM_015350	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
81374	chr16	4959351	4959650	+	0	NA	intron (NM_014692, intron 2 of 15)	intron (NM_014692, intron 2 of 15)	1170	NM_014692	9717		NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14 like lipid binding 5	protein-coding
223289	chr8	143742101	143742300	+	0	NA	intron (NM_001381874, intron 3 of 13)	intron (NM_001381874, intron 3 of 13)	8061	NM_001381874	642574		NM_001381874	ENSG00000203499	IQANK1	CACClnc|FAM83H-AS1|FAM83HAS1|onco-lncRNA-3	IQ motif and ankyrin repeat containing 1	protein-coding
4663	chr1	22416521	22417080	+	0	NA	Intergenic	Intergenic	-35051	NM_014870	9923		NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
129624	chr2	70126551	70126800	+	0	NA	Intergenic	L3|LINE|CR1	-1359	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
93559	chr17	19076101	19076900	+	0	NA	Intergenic	Intergenic	-12364	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
31986	chr10	100826671	100827280	+	0	NA	intron (NM_003988, intron 9 of 10)	CpG	81393	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
193133	chr6	29079771	29079930	+	0	NA	Intergenic	L2a|LINE|L2	7463	NM_001005226	442184		NM_001005226	ENSG00000204703	OR2B3	6M1-1|OR2B3P|OR6-14|OR6-4	olfactory receptor family 2 subfamily B member 3	protein-coding
82082	chr16	14288101	14288900	+	0	NA	Intergenic	AluSq2|SINE|Alu	-13788	NR_132983	100129781		NR_132983	ENSG00000262454	MIR193BHG	HypERlnc|lincNORS	MIR193b-365a host gene	ncRNA
222492	chr8	140456301	140456770	+	0	NA	intron (NM_031466, intron 1 of 22)	intron (NM_031466, intron 1 of 22)	1209	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
208491	chr7	67301901	67303580	+	0	NA	promoter-TSS (NR_046299)	promoter-TSS (NR_046299)	102	NR_040586	64940		NM_022906	ENSG00000291153	STAG3L4	STAG3L4P	STAG3 cohesin complex component like 4 (pseudogene)	pseudo
111207	chr19	3476471	3476830	+	0	NA	intron (NM_001136503, intron 3 of 3)	intron (NM_001136503, intron 3 of 3)	3875	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
187342	chr5	141673201	141673700	+	0	NA	exon (NM_022481, exon 6 of 33)	exon (NM_022481, exon 6 of 33)	8780	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
78946	chr15	101281301	101281500	+	0	NA	TTS (NR_135508)	TTS (NR_135508)	-3915	NM_203472	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
137035	chr2	190781701	190782300	+	0	NA	Intergenic	L1MC4|LINE|L1	-98821	NM_001256310	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
20343	chr1	197808871	197809230	+	0	NA	Intergenic	Intergenic	-33570	NM_001195215	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
92035	chr17	7487501	7488000	+	0	NA	intron (NM_000937, intron 1 of 29)	L2a|LINE|L2	3384	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
214783	chr7	151117301	151118250	+	0	NA	exon (NM_031946, exon 5 of 18)	exon (NM_031946, exon 5 of 18)	3137	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
34123	chr10	127945401	127945600	+	0	NA	intron (NM_001323355, intron 1 of 19)	intron (NM_001323355, intron 1 of 19)	38397	NM_001323355	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
162443	chr3	48445271	48445430	+	0	NA	Intergenic	Intergenic	-1360	NM_001271022	84126		NM_032166	ENSG00000164053	ATRIP	-	ATR interacting protein	protein-coding
26041	chr10	12412701	12413600	+	0	NA	intron (NM_001351032, intron 3 of 11)	MSTA|LTR|ERVL-MaLR	24168	NM_001351032	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
213476	chr7	139039351	139039650	+	0	NA	Intergenic	Intergenic	-3458	NM_080660	92092		NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding
19920	chr1	184386051	184388500	+	0	NA	5' UTR (NM_030806, exon 1 of 6)	5' UTR (NM_030806, exon 1 of 6)	246	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
144872	chr20	36912621	36913330	+	0	NA	intron (NM_001363733, intron 9 of 15)	intron (NM_001363733, intron 9 of 15)	36837	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
134261	chr2	135590701	135591380	+	0	NA	intron (NM_001282800, intron 1 of 22)	intron (NM_001282800, intron 1 of 22)	4688	NM_001354199	23518		NM_015361	ENSG00000048991	R3HDM1	R3HDM	R3H domain containing 1	protein-coding
208760	chr7	73537201	73537400	+	0	NA	non-coding (NR_036682, exon 6 of 6)	non-coding (NR_036682, exon 6 of 6)	-15007	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
55268	chr12	102769651	102769750	+	0	NA	Intergenic	Intergenic	54699	NR_033855	283432		NR_033855	ENSG00000258169	LINC00485	-	long intergenic non-protein coding RNA 485	ncRNA
91003	chr17	2776621	2777950	+	0	NA	intron (NM_001330058, intron 1 of 24)	intron (NM_001330058, intron 1 of 24)	527	NM_001330058	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
234552	chrX	19724471	19725030	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	-53751	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
196592	chr6	44219201	44220000	+	0	NA	promoter-TSS (NM_001304466)	promoter-TSS (NM_001304466)	-15	NM_001304465	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
35463	chr11	1466301	1466900	+	0	NA	Intergenic	MLT1D-int|LTR|ERVL-MaLR	14286	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
131589	chr2	96862601	96862800	+	0	NA	intron (NM_017789, intron 12 of 14)	AluY|SINE|Alu	-4684	NM_016466	51239		NM_016466	ENSG00000213337	ANKRD39	-	ankyrin repeat domain 39	protein-coding
34788	chr11	222271	222450	+	0	NA	intron (NR_163391, intron 3 of 4)	L2|LINE|L2	13024	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
201587	chr6	149340121	149340950	+	0	NA	intron (NM_015093, intron 2 of 8)	intron (NM_015093, intron 2 of 8)	22235	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
159706	chr3	15635971	15636980	+	0	NA	intron (NM_001281726, intron 2 of 2)	intron (NM_001281726, intron 2 of 2)	34506	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
239372	chrY	20813371	20813730	+	0	NA	Intergenic	MER50C|LTR|ERV1	57442	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
161916	chr3	45993451	45994050	+	0	NA	intron (NM_024513, intron 1 of 17)	intron (NM_024513, intron 1 of 17)	2074	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
75030	chr15	64102951	64103450	+	0	NA	intron (NM_001242933, intron 1 of 14)	L1MA4|LINE|L1	7218	NM_003099	6642		NM_003099	ENSG00000028528	SNX1	HsT17379|VPS5	sorting nexin 1	protein-coding
224981	chr9	33099751	33100450	+	0	NA	Intergenic	Intergenic	-8592	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
148097	chr20	63314751	63315050	+	0	NA	intron (NM_020882, intron 19 of 35)	intron (NM_020882, intron 19 of 35)	21714	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
229649	chr9	124261051	124261400	+	0	NA	promoter-TSS (NR_149024)	promoter-TSS (NR_149024)	-57	NR_149024	613206		NM_001033016	ENSG00000235204	LOC613206	-	uncharacterized LOC613206	ncRNA
232709	chr9	136568601	136569200	+	0	NA	Intergenic	Intergenic	21058	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
102707	chr17	76153371	76153530	+	0	NA	non-coding (NR_040017, exon 7 of 8)	non-coding (NR_040017, exon 7 of 8)	-12205	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
189887	chr5	177329971	177330330	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-18252	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
40407	chr11	64068871	64069030	+	0	NA	intron (NM_001384466, intron 1 of 2)	intron (NM_001384466, intron 1 of 2)	32268	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
69130	chr14	92536371	92536730	+	0	NA	intron (NM_024832, intron 1 of 9)	AluSc|SINE|Alu	22769	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
227447	chr9	90642701	90642930	+	0	NA	promoter-TSS (NM_017594)	promoter-TSS (NM_017594)	9	NM_017594	54769		NM_017594	ENSG00000165023	DIRAS2	Di-Ras2	DIRAS family GTPase 2	protein-coding
126377	chr2	27490921	27491430	+	0	NA	TTS (NM_022823)	TTS (NM_022823)	-1432	NM_015662	26160		NM_015662	ENSG00000138002	IFT172	BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim	intraflagellar transport 172	protein-coding
131660	chr2	97660201	97660500	+	0	NA	intron (NM_005735, intron 3 of 10)	intron (NM_005735, intron 3 of 10)	3694	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
168986	chr3	152407801	152408230	+	0	NA	intron (NM_001314057, intron 3 of 11)	L1PA10|LINE|L1	-67025	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
211331	chr7	104848351	104848750	+	0	NA	intron (NM_199000, intron 2 of 2)	intron (NM_199000, intron 2 of 2)	-44458	NR_034142	645591		NR_034141	ENSG00000226869	LHFPL3-AS1	-	LHFPL3 antisense RNA 1	ncRNA
138519	chr2	207332701	207332900	+	0	NA	Intergenic	Intergenic	-63376	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA
123319	chr19	53579301	53579500	+	0	NA	3' UTR (NM_001253801, exon 5 of 5)	3' UTR (NM_001253801, exon 5 of 5)	24093	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
208517	chr7	70197471	70197880	+	0	NA	intron (NM_015570, intron 4 of 18)	L1HS|LINE|L1	599200	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
80523	chr16	2761451	2761750	+	0	NA	exon (NM_016333, exon 11 of 15)	exon (NM_016333, exon 11 of 15)	8962	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
231166	chr9	129886701	129888000	+	0	NA	3' UTR (NM_015033, exon 17 of 17)	3' UTR (NM_015033, exon 17 of 17)	17745	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
25338	chr10	6248151	6248250	+	0	NA	intron (NM_001363545, intron 14 of 14)	intron (NM_001363545, intron 14 of 14)	45268	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
202135	chr6	154952871	154953030	+	0	NA	Intergenic	Intergenic	-42365	NM_012454	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
206642	chr7	36151451	36151550	+	0	NA	Intergenic	Intergenic	-1754	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
214684	chr7	150971901	150972480	+	0	NA	intron (NM_172056, intron 2 of 8)	intron (NM_172056, intron 2 of 8)	6124	NM_172056	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
182397	chr5	61319501	61319980	+	0	NA	Intergenic	Intergenic	-12518	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
73636	chr15	44670571	44671430	+	0	NA	intron (NM_001330283, intron 6 of 14)	intron (NM_001330283, intron 6 of 14)	5888	NM_001330283	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
221051	chr8	116786471	116786950	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	20186	NM_032334	84294		NM_032334	ENSG00000147679	UTP23	C8orf53	UTP23 small subunit processome component	protein-coding
170048	chr3	182792521	182794650	+	0	NA	promoter-TSS (NM_014616)	promoter-TSS (NM_014616)	81	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
211004	chr7	102304151	102304530	+	0	NA	intron (NM_001359228, intron 2 of 8)	intron (NM_001359228, intron 2 of 8)	11237	NR_036245	100422858		NR_036245	ENSG00000264675	MIR4285	-	microRNA 4285	ncRNA
6019	chr1	27098421	27098880	+	0	NA	TTS (NM_003047)	TTS (NM_003047)	56475	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
188145	chr5	150406321	150407850	+	0	NA	intron (NM_001025158, intron 2 of 5)	intron (NM_001025158, intron 2 of 5)	5671	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
166949	chr3	125214671	125215100	+	0	NA	Intergenic	Intergenic	-2137	NM_024628	84561		NM_024628	ENSG00000221955	SLC12A8	CCC9	solute carrier family 12 member 8	protein-coding
31262	chr10	92210751	92211800	+	0	NA	intron (NM_014912, intron 2 of 9)	intron (NM_014912, intron 2 of 9)	32004	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
127207	chr2	38585921	38586430	+	0	NA	intron (NM_138394, intron 2 of 12)	AluY|SINE|Alu	16753	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
209993	chr7	92862951	92863250	+	0	NA	intron (NR_110087, intron 2 of 2)	THE1B-int|LTR|ERVL-MaLR	-26527	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
70985	chr14	104712151	104712450	+	0	NA	intron (NM_022489, intron 16 of 22)	(CTGCAGC)n|Simple_repeat|Simple_repeat	-11929	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
236454	chrX	71558801	71559000	+	0	NA	intron (NM_181672, intron 12 of 21)	AluSz|SINE|Alu	-19124	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
178530	chr4	151007571	151008450	+	0	NA	intron (NM_001367550, intron 2 of 56)	L1MB8|LINE|L1	7257	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
91361	chr17	4535601	4536030	+	0	NA	intron (NM_001124758, intron 9 of 12)	intron (NM_001124758, intron 9 of 12)	19569	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
95369	chr17	35872621	35873450	+	0	NA	intron (NM_002985, intron 2 of 2).2	AluSx1|SINE|Alu	-4144	NR_135630	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
220710	chr8	101890851	101890950	+	0	NA	intron (NM_001040626, intron 3 of 6)	L1ME3F|LINE|L1	-93532	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
197100	chr6	57088101	57088300	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-1830	NM_015555	26036		NM_015555	ENSG00000112200	ZNF451	COASTER|ZATT|dJ417I1.1	zinc finger protein 451	protein-coding
85715	chr16	56627371	56627530	+	0	NA	TTS (NM_001363555)	TTS (NM_001363555)	1669	NM_175617	4493		NM_175617	ENSG00000169715	MT1E	MT-1E|MT-IE|MT1|MTD	metallothionein 1E	protein-coding
24211	chr1	236102671	236102830	+	0	NA	Intergenic	Intergenic	-37660	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
233236	chr9	137251401	137251600	+	0	NA	intron (NR_046339, intron 1 of 4)	intron (NR_046339, intron 1 of 4)	214	NR_046339	441476		NM_001004353	ENSG00000197768	STPG3	C9orf173	sperm-tail PG-rich repeat containing 3	protein-coding
131355	chr2	96172321	96172580	+	0	NA	Intergenic	Intergenic	-27010	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
62524	chr13	99526871	99527030	+	0	NA	intron (NM_004800, intron 3 of 16)	L2a|LINE|L2	25478	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
77921	chr15	89313721	89314100	+	0	NA	intron (NM_018193, intron 34 of 36)	(AC)n|Simple_repeat|Simple_repeat	12900	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
85674	chr16	56356371	56357930	+	0	NA	3' UTR (NM_020988, exon 9 of 9)	3' UTR (NM_020988, exon 9 of 9)	67839	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
97049	chr17	42338501	42339700	+	0	NA	intron (NM_001384989, intron 4 of 22)	AluJb|SINE|Alu	49342	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
11621	chr1	91726501	91726900	+	0	NA	intron (NR_036634, intron 8 of 17)	intron (NR_036634, intron 8 of 17)	159451	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
15629	chr1	150632151	150632250	+	0	NA	Intergenic	L2|LINE|L2	-2578	NM_207168	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
54999	chr12	96360071	96360480	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	40164	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
234756	chrX	23699701	23700100	+	0	NA	Intergenic	LTR25|LTR|ERV1	32407	NM_006406	10549		NM_006406	ENSG00000123131	PRDX4	AOE37-2|AOE372|HEL-S-97n|PRX-4	peroxiredoxin 4	protein-coding
140143	chr2	231595801	231596000	+	0	NA	Intergenic	Intergenic	3036	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
210002	chr7	93092771	93092930	+	0	NA	Intergenic	L1M1|LINE|L1	25129	NM_017654	54809		NM_017654	ENSG00000205413	SAMD9	C7orf5|DRIF1|M7MLS2|MIRAGE|NFTC|OEF1|OEF2	sterile alpha motif domain containing 9	protein-coding
196796	chr6	45741621	45741880	+	0	NA	Intergenic	Intergenic	195847	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
159502	chr3	14377721	14378480	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-24476	NM_001134367	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
148373	chr20	63885851	63886150	+	0	NA	intron (NM_001243895, intron 5 of 5)	intron (NM_001243895, intron 5 of 5)	-9126	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
191263	chr6	6007071	6007880	+	0	NA	promoter-TSS (NM_016588)	promoter-TSS (NM_016588)	130	NM_001278710	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
72399	chr15	31390301	31390500	+	0	NA	intron (NM_001302461, intron 1 of 1).3	HAL1ME|LINE|L1	63565	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
223853	chr9	88551	89030	+	0	NA	TTS (NR_121190).2	TTS (NR_121190).2	16100	NR_121190	101929127		NR_121188	ENSG00000277631	PGM5P3-AS1	FAM233B	PGM5P3 antisense RNA 1	ncRNA
110659	chr19	2248671	2248830	+	0	NA	promoter-TSS (NM_000479)	promoter-TSS (NM_000479)	-573	NM_000479	268		NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
74085	chr15	52683501	52684250	+	0	NA	intron (NM_001385021, intron 1 of 10)	intron (NM_001385021, intron 1 of 10)	-4487	NR_169540	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
23759	chr1	232870271	232870430	+	0	NA	Intergenic	MLT2F|LTR|ERVL	64934	NM_019090	54627		NM_019090	ENSG00000212916	MAP10	KIAA1383|MTR120	microtubule associated protein 10	protein-coding
220567	chr8	100764121	100764380	+	0	NA	Intergenic	Intergenic	-42162	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
35599	chr11	1754471	1754650	+	0	NA	intron (NM_001909, intron 6 of 8)	intron (NM_001909, intron 6 of 8)	-3965	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
31591	chr10	97354071	97354230	+	0	NA	Intergenic	Intergenic	-19421	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
76653	chr15	75645351	75645850	+	0	NA	Intergenic	AluSz|SINE|Alu	-2312	NM_153271	257364		NM_153271	ENSG00000173548	SNX33	SH3PX3|SH3PXD3C|SNX30	sorting nexin 33	protein-coding
29944	chr10	73467251	73467580	+	0	NA	intron (NM_001142354, intron 9 of 12)	intron (NM_001142354, intron 9 of 12)	-28337	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
130028	chr2	74334901	74335330	+	0	NA	intron (NM_133478, intron 3 of 30)	MIRb|SINE|MIR	8301	NM_133478	57835		NM_021196	ENSG00000188687	SLC4A5	NBC4|NBCe2	solute carrier family 4 member 5	protein-coding
37840	chr11	33362321	33362660	+	0	NA	Intergenic	Intergenic	-13618	NM_012194	25758		NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549 like	protein-coding
213765	chr7	140645351	140645650	+	0	NA	Intergenic	MIRb|SINE|MIR	-4040	NM_001318053	27147		NM_015689	ENSG00000146966	DENND2A	FAM31D|KIAA1277	DENN domain containing 2A	protein-coding
34316	chr10	132152521	132153180	+	0	NA	intron (NM_001323087, intron 16 of 23)	intron (NM_001323087, intron 16 of 23)	-34098	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
182073	chr5	55979221	55979480	+	0	NA	intron (NR_157112, intron 2 of 17)	L1ME3|LINE|L1	15613	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
101178	chr17	65175401	65175630	+	0	NA	intron (NM_001165933, intron 8 of 16)	L2b|LINE|L2	38145	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
88333	chr16	84514301	84516080	+	0	NA	Intergenic	Intergenic	-10531	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
217051	chr8	23319921	23320180	+	0	NA	exon (NM_002318, exon 8 of 14)	exon (NM_002318, exon 8 of 14)	-16158	NR_038323	100507156		NR_038323	ENSG00000253837	LOXL2-AS1	-	LOXL2 antisense RNA 1	ncRNA
107550	chr18	48782601	48782800	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	112100	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
227004	chr9	83695971	83696330	+	0	NA	intron (NM_053067, intron 1 of 9)	AluSc|SINE|Alu	-11685	NR_135839	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
110909	chr19	2766901	2767300	+	0	NA	intron (NM_003021, intron 4 of 11)	intron (NM_003021, intron 4 of 11)	16173	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
211447	chr7	105078351	105078980	+	0	NA	intron (NM_182931, intron 11 of 26)	(T)n|Simple_repeat|Simple_repeat	64460	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
126093	chr2	25838171	25838330	+	0	NA	intron (NM_018263, intron 2 of 11)	LTR41|LTR|ERVL	-7349	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
194494	chr6	33263171	33263530	+	0	NA	intron (NM_001289175, intron 17 of 19).6	intron (NM_001289175, intron 17 of 19).6	8526	NM_022553	6293		NM_022553	ENSG00000223501	VPS52	ARE1|SAC2|SACM2L|dJ1033B10.5	VPS52 subunit of GARP complex	protein-coding
180840	chr5	32564551	32564650	+	0	NA	Intergenic	MLT2D|LTR|ERVL	-20957	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
227331	chr9	89450201	89450980	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	29300	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
198962	chr6	110881451	110881830	+	0	NA	intron (NM_001287216, intron 1 of 4)	AluSx1|SINE|Alu	6856	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
2845	chr1	11263551	11263880	+	0	NA	Intergenic	L1ME4a|LINE|L1	-1164	NM_004958	2475		NM_004958	ENSG00000198793	MTOR	FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS	mechanistic target of rapamycin kinase	protein-coding
180375	chr5	7849771	7851050	+	0	NA	intron (NM_001089584, intron 1 of 2)	CpG	723	NM_001089584	134121		NM_001089584	ENSG00000215217	CFAP90	C5orf49	cilia and flagella associated protein 90	protein-coding
50099	chr12	44852421	44852680	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	23111	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
46467	chr11	128293121	128293380	+	0	NA	Intergenic	Intergenic	84484	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
52651	chr12	56294271	56294430	+	0	NA	intron (NM_004077, intron 1 of 10)	AluSx|SINE|Alu	5980	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
109143	chr18	80245671	80245850	+	0	NA	intron (NM_032510, intron 1 of 2)	intron (NM_032510, intron 1 of 2)	1754	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
121811	chr19	47926371	47926530	+	0	NA	Intergenic	L1PB1|LINE|L1	-2368	NR_024220	100170225		NR_024220		SNAR-C1	-	small NF90 (ILF3) associated RNA C1	snRNA
92258	chr17	7997151	7997450	+	0	NA	Intergenic	Intergenic	-5315	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
117732	chr19	29603271	29603630	+	0	NA	Intergenic	MER50|LTR|ERV1	-2833	NM_006627	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
89739	chr16	89435651	89436580	+	0	NA	intron (NR_110932, intron 1 of 2)	intron (NR_110932, intron 1 of 2)	5197	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
145981	chr20	46358551	46359030	+	0	NA	5' UTR (NM_001281460, exon 3 of 11)	5' UTR (NM_001281460, exon 3 of 11)	5635	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
51277	chr12	51201901	51202100	+	0	NA	3' UTR (NM_001351088, exon 3 of 3)	3' UTR (NM_001351088, exon 3 of 3)	15305	NM_001368008	5463		NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
193512	chr6	30580951	30581580	+	0	NA	intron (NM_001090, intron 8 of 23).3	MIR3|SINE|MIR	-3067	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
109392	chr19	662101	662600	+	0	NA	intron (NM_194460, intron 1 of 8)	CpG	864	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
196768	chr6	45477171	45477330	+	0	NA	intron (NM_001278478, intron 3 of 5)	L2c|LINE|L2	54975	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
112655	chr19	6860951	6861900	+	0	NA	Intergenic	MIR3|SINE|MIR	-26154	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
235482	chrX	46758251	46759610	+	0	NA	exon (NM_032591, exon 1 of 17)	exon (NM_032591, exon 1 of 17)	188	NM_001257291	84679		NM_032591	ENSG00000065923	SLC9A7	MRX108|NHE-7|NHE7|SLC9A6	solute carrier family 9 member A7	protein-coding
120633	chr19	45065621	45066100	+	0	NA	intron (NM_001278439, intron 12 of 19)	MIRb|SINE|MIR	-9767	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
213839	chr7	141731601	141731900	+	0	NA	TTS (NM_001105558).2	TTS (NM_001105558).2	6480	NR_015392	285962		NM_173677	ENSG00000228775	WEE2-AS1	-	WEE2 antisense RNA 1	ncRNA
3955	chr1	18638421	18638680	+	0	NA	intron (NM_001135254, intron 4 of 8)	intron (NM_001135254, intron 4 of 8)	7704	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
2547	chr1	9731671	9732130	+	0	NA	intron (NM_014944, intron 15 of 17)	intron (NM_014944, intron 15 of 17)	40433	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
64440	chr14	24206951	24207780	+	0	NA	exon (NM_001308067, exon 3 of 4)	exon (NM_001308067, exon 3 of 4)	1669	NM_001308067	283629		NM_174944	ENSG00000139908	TSSK4	C14orf20|STK22E|TSK-4|TSK4|TSSK5	testis specific serine kinase 4	protein-coding
9031	chr1	44778721	44779400	+	0	NA	TTS (NR_001457)	TTS (NR_001457)	670	NR_001457	94163		NR_001457	ENSG00000281859	SNORD38B	RNU38B|U38B	small nucleolar RNA, C/D box 38B	snoRNA
166588	chr3	118949171	118949730	+	0	NA	intron (NM_001353326, intron 1 of 7)	(ACATAC)n|Simple_repeat|Simple_repeat	6374	NR_046230	100506765		NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
121536	chr19	47236801	47237330	+	0	NA	Intergenic	AluJr|SINE|Alu	-4398	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
172953	chr4	3530501	3531150	+	0	NA	intron (NM_002337, intron 1 of 7)	intron (NM_002337, intron 1 of 7)	1324	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
238255	chrX	148049471	148049800	+	0	NA	Intergenic	Intergenic	68298	NM_152578	158521		NM_152578	ENSG00000176988	FMR1NB	CT37|NY-SAR-35|NYSAR35	FMR1 neighbor	protein-coding
148079	chr20	63292951	63293050	+	0	NA	promoter-TSS (NM_020882)	promoter-TSS (NM_020882)	-186	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
45220	chr11	117876541	117877300	+	0	NA	promoter-TSS (NM_022003)	promoter-TSS (NM_022003)	111	NM_001164837	53826		NM_022003	ENSG00000137726	FXYD6	-	FXYD domain containing ion transport regulator 6	protein-coding
200248	chr6	132354501	132354930	+	0	NA	intron (NM_015529, intron 4 of 11)	L1PB1|LINE|L1	46760	NM_015529	26002		NM_015529	ENSG00000079931	MOXD1	MOX|PRO5780|dJ248E1.1	monooxygenase DBH like 1	protein-coding
33132	chr10	112371551	112371650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2516	NM_203379	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
112905	chr19	7639271	7640080	+	0	NA	intron (NM_006949, intron 3 of 18)	intron (NM_006949, intron 3 of 18)	2565	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
21638	chr1	206613421	206613730	+	0	NA	Intergenic	AluJb|SINE|Alu	-1024	NM_001201478	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
189702	chr5	176512321	176512780	+	0	NA	Intergenic	AluSz|SINE|Alu	24852	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
126399	chr2	27628471	27629930	+	0	NA	promoter-TSS (NM_001142683)	promoter-TSS (NM_001142683)	150	NM_007266	11321		NM_007266	ENSG00000198522	GPN1	ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1	GPN-loop GTPase 1	protein-coding
128881	chr2	64102701	64103100	+	0	NA	intron (NM_020651, intron 3 of 6)	AluJb|SINE|Alu	41520	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
102882	chr17	76518951	76519450	+	0	NA	Intergenic	Intergenic	-8386	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
167131	chr3	127691051	127691150	+	0	NA	3' UTR (NM_001256585, exon 7 of 7)	3' UTR (NM_001256585, exon 7 of 7)	18148	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
89568	chr16	89259201	89259600	+	0	NA	Intergenic	L1M4|LINE|L1	-36728	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
69844	chr14	99246351	99247880	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	25082	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
172603	chr4	2489601	2489800	+	0	NA	intron (NM_001185009, intron 2 of 8)	intron (NM_001185009, intron 2 of 8)	20247	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
182379	chr5	60972271	60972450	+	0	NA	intron (NM_174889, intron 1 of 3)	THE1D|LTR|ERVL-MaLR	27155	NM_174889	91942		NM_174889	ENSG00000164182	NDUFAF2	B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin	NADH:ubiquinone oxidoreductase complex assembly factor 2	protein-coding
155980	chr22	39909851	39911800	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	9741	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
44208	chr11	96300101	96300300	+	0	NA	intron (NM_032427, intron 1 of 4)	L2|LINE|L2	-41238	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
138471	chr2	206693671	206693900	+	0	NA	intron (NM_001093730, intron 8 of 11)	intron (NM_001093730, intron 8 of 11)	24611	NM_001093730	391475		NM_001093730	ENSG00000232125	DYTN	-	dystrotelin	protein-coding
140392	chr2	233074251	233074550	+	0	NA	intron (NM_001017915, intron 1 of 26).2	intron (NM_001017915, intron 1 of 26).2	14058	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
18066	chr1	160641471	160642430	+	0	NA	intron (NR_104400, intron 1 of 4)	intron (NR_104400, intron 1 of 4)	5094	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
50127	chr12	45257071	45257430	+	0	NA	intron (NM_001142679, intron 1 of 19)	intron (NM_001142679, intron 1 of 19)	-35440	NM_001142678	196527		NM_001025356	ENSG00000177119	ANO6	BDPLT7|SCTS|TMEM16F	anoctamin 6	protein-coding
171928	chr4	868571	868930	+	0	NA	intron (NM_001318134, intron 16 of 24)	intron (NM_001318134, intron 16 of 24)	-42621	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
48131	chr12	7902001	7902280	+	0	NA	Intergenic	AluSc|SINE|Alu	-10944	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
17182	chr1	156232401	156232750	+	0	NA	intron (NM_001199653, intron 2 of 4)	intron (NM_001199653, intron 2 of 4)	-9609	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
120734	chr19	45370151	45371350	+	0	NA	promoter-TSS (NM_000400)	promoter-TSS (NM_000400)	-163	NM_001130867	2068		NM_000400	ENSG00000104884	ERCC2	COFS2|EM9|TFIIH|TTD|TTD1|XPD	ERCC excision repair 2, TFIIH core complex helicase subunit	protein-coding
30804	chr10	84499901	84500100	+	0	NA	exon (NM_001351290, exon 10 of 12)	exon (NM_001351290, exon 10 of 12)	74831	NM_001284242	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
118423	chr19	35779001	35779200	+	0	NA	exon (NM_001366178, exon 6 of 21)	exon (NM_001366178, exon 6 of 21)	3536	NM_001366178	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
88654	chr16	85649371	85649900	+	0	NA	intron (NM_001278184, intron 2 of 14)	intron (NM_001278184, intron 2 of 14)	36313	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
11570	chr1	91519151	91519450	+	0	NA	intron (NM_001134420, intron 10 of 11)	AluSz6|SINE|Alu	18192	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
225872	chr9	38620121	38622450	+	0	NA	promoter-TSS (NM_001331100)	promoter-TSS (NM_001331100)	197	NR_027294	158228		NR_027294		FAM201A	C9orf122	family with sequence similarity 201 member A	ncRNA
48838	chr12	12363521	12363930	+	0	NA	intron (NM_058169, intron 2 of 3)	AluY|SINE|Alu	6647	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
76334	chr15	74416671	74417030	+	0	NA	intron (NM_001146029, intron 5 of 12)	intron (NM_001146029, intron 5 of 12)	-5418	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
172704	chr4	2788651	2789130	+	0	NA	Intergenic	Intergenic	-4195	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
49605	chr12	27523371	27524900	+	0	NA	promoter-TSS (NM_001198916)	promoter-TSS (NM_001198916)	-71	NM_001198916	8496		NM_003622	ENSG00000110841	PPFIBP1	L2|NEDSMBA|SGT2|hSGT2|hSgt2p	PPFIA binding protein 1	protein-coding
5757	chr1	26482001	26482200	+	0	NA	Intergenic	AluSx1|SINE|Alu	9660	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
85927	chr16	57123751	57124600	+	0	NA	intron (NM_152727, intron 10 of 15)	AluJo|SINE|Alu	31592	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
157346	chr22	44675501	44675700	+	0	NA	intron (NM_001017529, intron 1 of 7)	MIRb|SINE|MIR	-1208	NM_001017530	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
122864	chr19	50489151	50489330	+	0	NA	3' UTR (NM_175063, exon 8 of 8)	3' UTR (NM_175063, exon 8 of 8)	-12392	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
72029	chr15	28126071	28126580	+	0	NA	intron (NM_004667, intron 83 of 92)	L1PB1|LINE|L1	-27010	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
170067	chr3	182904301	182904700	+	0	NA	intron (NM_014616, intron 28 of 29)	intron (NM_014616, intron 28 of 29)	76038	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
26935	chr10	26483771	26484630	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	45859	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
68623	chr14	89673721	89674090	+	0	NA	Intergenic	Intergenic	-54740	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
13143	chr1	111685271	111685730	+	0	NA	intron (NM_001370217, intron 1 of 7)	L1PA7|LINE|L1	20706	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
88215	chr16	81840671	81840830	+	0	NA	intron (NM_002661, intron 2 of 32)	MER1A|DNA|hAT-Charlie	61459	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
12727	chr1	109540151	109540450	+	0	NA	intron (NM_031936, intron 1 of 2)	intron (NM_031936, intron 1 of 2)	428	NM_031936	83873		NM_031936	ENSG00000156097	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
154726	chr22	36456801	36457000	+	0	NA	Intergenic	AluSp|SINE|Alu	24740	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
92941	chr17	16990351	16990450	+	0	NA	TTS (NR_146886)	TTS (NR_146886)	2071	NR_146886	105371562		NR_146886	ENSG00000230969	LINC02090	-	long intergenic non-protein coding RNA 2090	ncRNA
227468	chr9	91089751	91089850	+	0	NA	Intergenic	Intergenic	-14668	NR_033912	100129316		NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
65606	chr14	52247871	52248630	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-19448	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
113209	chr19	8453621	8454450	+	0	NA	intron (NM_031203, intron 1 of 16)	intron (NM_031203, intron 1 of 16)	9060	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
105641	chr18	908401	909280	+	0	NA	intron (NM_001117, intron 3 of 3)	CpG-12302	3474	NM_001117	116		NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
63000	chr13	112510151	112510250	+	0	NA	intron (NM_001286278, intron 17 of 20)	intron (NM_001286278, intron 17 of 20)	77953	NM_006322	10426		NM_006322	ENSG00000126216	TUBGCP3	104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex component 3	protein-coding
156424	chr22	41207301	41207880	+	0	NA	intron (NM_031488, intron 1 of 16)	MIR|SINE|MIR	2278	NM_031488	83746		NM_031488	ENSG00000100395	L3MBTL2	H-l(3)mbt-l|L3MBT	L3MBTL histone methyl-lysine binding protein 2	protein-coding
106220	chr18	11848151	11848850	+	0	NA	intron (NM_182978, intron 5 of 11)	AluSz|SINE|Alu	-2913	NM_020412	57132		NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
50329	chr12	47032601	47033250	+	0	NA	Intergenic	Intergenic	-46678	NM_001281429	91523		NM_138371	ENSG00000179715	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
35825	chr11	2267471	2267830	+	0	NA	TTS (NM_005170)	TTS (NM_005170)	2938	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
119558	chr19	40613151	40614500	+	0	NA	intron (NM_001042544, intron 20 of 32)	CpG-14533	12456	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
198134	chr6	90458401	90459330	+	0	NA	Intergenic	Intergenic	128207	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
177504	chr4	115234601	115234800	+	0	NA	Intergenic	Intergenic	-121080	NM_022569	64579		NM_022569	ENSG00000138653	NDST4	N-HSST|N-HSST 4|NDST-4|NHSST4	N-deacetylase and N-sulfotransferase 4	protein-coding
218350	chr8	43020751	43021530	+	0	NA	3' UTR (NM_032410, exon 22 of 22)	3' UTR (NM_032410, exon 22 of 22)	-35159	NR_033698	2339		NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, subunit alpha	protein-coding
80202	chr16	2150771	2151080	+	0	NA	intron (NM_014353, intron 2 of 8)	intron (NM_014353, intron 2 of 8)	2300	NM_014353	25837		NM_014353	ENSG00000167964	RAB26	V46133	RAB26, member RAS oncogene family	protein-coding
185471	chr5	131285151	131285250	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluJb|SINE|Alu	21147	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
114378	chr19	12543771	12543930	+	0	NA	intron (NM_144976, intron 1 of 3)	MLT1A|LTR|ERVL-MaLR	7632	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
157073	chr22	42604751	42605050	+	0	NA	intron (NM_001278657, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	9983	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
121317	chr19	46755401	46756150	+	0	NA	exon (NM_024301, exon 4 of 4)	exon (NM_024301, exon 4 of 4)	-9325	NM_013403	29888		NM_013403	ENSG00000090372	STRN4	PPP2R6C|ZIN|zinedin	striatin 4	protein-coding
39194	chr11	57477851	57478330	+	0	NA	TTS (NM_178570)	TTS (NM_178570)	17562	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
103166	chr17	77429801	77431000	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-20349	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
43769	chr11	86244901	86246400	+	0	NA	intron (NM_001330334, intron 1 of 9)	intron (NM_001330334, intron 1 of 9)	897	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
92778	chr17	15702201	15702830	+	0	NA	intron (NM_001369437, intron 3 of 3)	AluSx|SINE|Alu	2763	NM_001369436	57335		NM_020652	ENSG00000187607	ZNF286A	ZNF286	zinc finger protein 286A	protein-coding
51757	chr12	53292351	53292950	+	0	NA	exon (NM_012291, exon 29 of 31)	exon (NM_012291, exon 29 of 31)	-2801	NM_145897	5204		NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
112532	chr19	6519801	6520000	+	0	NA	Intergenic	AluSz|SINE|Alu	-11126	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
203660	chr7	992151	992250	+	0	NA	intron (NR_156697, intron 4 of 4)	intron (NR_156697, intron 4 of 4)	9019	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
228030	chr9	95887921	95888980	+	0	NA	intron (NM_001375291, intron 2 of 18)	intron (NM_001375291, intron 2 of 18)	-12473	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
43538	chr11	82882551	82882650	+	0	NA	intron (NM_005040, intron 1 of 8)	AluYa5|SINE|Alu	17830	NM_005040	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
230936	chr9	129407771	129408130	+	0	NA	Intergenic	AluJr|SINE|Alu	71027	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
86986	chr16	68215721	68215980	+	0	NA	intron (NM_004555, intron 10 of 10)	AluY|SINE|Alu	17649	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
19422	chr1	174192301	174192950	+	0	NA	intron (NM_001366447, intron 1 of 20)	intron (NM_001366447, intron 1 of 20)	33105	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
4846	chr1	23689601	23690500	+	0	NA	Intergenic	AluSz|SINE|Alu	-1729	NM_001199802	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
26457	chr10	17507221	17507700	+	0	NA	Intergenic	AluJr|SINE|Alu	-52865	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
166976	chr3	125594751	125596650	+	0	NA	promoter-TSS (NM_022776)	promoter-TSS (NM_022776)	-203	NM_022776	114885		NM_022776	ENSG00000144909	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein like 11	protein-coding
133587	chr2	121689021	121689280	+	0	NA	intron (NR_037857, intron 2 of 3)	AluSz|SINE|Alu	39161	NR_037856	254128		NR_037856	ENSG00000236859	NIFK-AS1	-	NIFK antisense RNA 1	ncRNA
128387	chr2	55044871	55045230	+	0	NA	intron (NM_001321904, intron 2 of 9)	intron (NM_001321904, intron 2 of 9)	2276	NM_001321863	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
203589	chr7	924701	925130	+	0	NA	intron (NM_006869, intron 3 of 10)	intron (NM_006869, intron 3 of 10)	2301	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
124954	chr2	8664371	8665150	+	0	NA	Intergenic	Intergenic	17101	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
114901	chr19	13927101	13927300	+	0	NA	exon (NM_017721, exon 22 of 29)	exon (NM_017721, exon 22 of 29)	11217	NM_001370095	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
128014	chr2	47155421	47156250	+	0	NA	promoter-TSS (NM_173649)	promoter-TSS (NM_173649)	-527	NM_173649	285051		NM_173649	ENSG00000239605	STPG4	C2orf61|GSE	sperm-tail PG-rich repeat containing 4	protein-coding
135145	chr2	157453001	157454130	+	0	NA	Intergenic	Intergenic	-9476	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
133806	chr2	127807721	127807980	+	0	NA	intron (NM_001006623, intron 1 of 7)	intron (NM_001006623, intron 1 of 7)	3321	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
177165	chr4	108146451	108147050	+	0	NA	intron (NM_016269, intron 3 of 11)	Tigger4a|DNA|TcMar-Tigger	20047	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
67190	chr14	68854501	68854700	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-58357	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
23279	chr1	227969901	227970200	+	0	NA	Intergenic	Intergenic	3039	NR_153418	107985355		NR_153418		LOC107985355	-	uncharacterized LOC107985355	ncRNA
157379	chr22	44715701	44715900	+	0	NA	intron (NM_001017530, intron 2 of 7)	AluJo|SINE|Alu	13596	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
44186	chr11	96257921	96258850	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-83053	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
61548	chr13	60426101	60426400	+	0	NA	intron (NM_001146070, intron 1 of 13)	L1MA9|LINE|L1	29030	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
48720	chr12	10700551	10700650	+	0	NA	intron (NM_003651, intron 9 of 9)	MIR|SINE|MIR	22723	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
94427	chr17	29138121	29139090	+	0	NA	intron (NM_001346768, intron 1 of 40)	MIRb|SINE|MIR	1784	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
160664	chr3	31962951	31963050	+	0	NA	intron (NM_001174060, intron 1 of 10)	intron (NM_001174060, intron 1 of 10)	-18750	NM_001137674	344787		NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
36374	chr11	3961151	3961250	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluJo|SINE|Alu	105138	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
103198	chr17	77465451	77466400	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	-9710	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
81864	chr16	11642351	11642930	+	0	NA	Intergenic	AluSx|SINE|Alu	-25815	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
114651	chr19	13033301	13033500	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	8621	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
124604	chr2	950171	951330	+	0	NA	promoter-TSS (NM_018968)	promoter-TSS (NM_018968)	-99	NM_018968	54221		NM_018968	ENSG00000172554	SNTG2	G2SYN|SYN5	syntrophin gamma 2	protein-coding
227837	chr9	93464501	93465080	+	0	NA	intron (NM_001286723, intron 1 of 9)	intron (NM_001286723, intron 1 of 9)	-11189	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
67165	chr14	68788721	68790300	+	0	NA	3' UTR (NM_001244701, exon 3 of 3)	3' UTR (NM_001244701, exon 3 of 3)	3557	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
201969	chr6	152182771	152183700	+	0	NA	intron (NM_033071, intron 127 of 145)	intron (NM_033071, intron 127 of 145)	2143	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
131967	chr2	100102801	100103000	+	0	NA	intron (NM_001025108, intron 2 of 23)	intron (NM_001025108, intron 2 of 23)	2683	NM_001025108	3899		NM_002285	ENSG00000144218	AFF3	KINS|LAF4|MLLT2-like	ALF transcription elongation factor 3	protein-coding
121084	chr19	45890151	45890250	+	0	NA	3' UTR (NM_001012643, exon 3 of 3)	3' UTR (NM_001012643, exon 3 of 3)	-4059	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
159935	chr3	17055421	17055680	+	0	NA	intron (NM_015184, intron 4 of 5)	intron (NM_015184, intron 4 of 5)	122354	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
41892	chr11	67256151	67256800	+	0	NA	non-coding (NR_027473, exon 21 of 21)	non-coding (NR_027473, exon 21 of 21)	-9998	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
98696	chr17	47916501	47916900	+	0	NA	exon (NM_003110, exon 3 of 7)	exon (NM_003110, exon 3 of 7)	20464	NM_003110	6668		NM_003110	ENSG00000167182	SP2	-	Sp2 transcription factor	protein-coding
102750	chr17	76267351	76267890	+	0	NA	intron (NM_182565, intron 2 of 2)	FLAM_C|SINE|Alu	2272	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
72197	chr15	30134901	30135280	+	0	NA	promoter-TSS (NM_001355469).9	promoter-TSS (NM_001355469).9	39	NM_001355469	653075		NM_001355469	ENSG00000261247	GOLGA8T	-	golgin A8 family member T	protein-coding
158225	chr22	50275371	50275550	+	0	NA	3' UTR (NM_001376884, exon 36 of 36)	3' UTR (NM_001376884, exon 36 of 36)	-5080	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
41923	chr11	67288701	67290500	+	0	NA	intron (NM_207354, intron 1 of 14)	CpG	297	NM_001347901	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
79345	chr16	588301	591150	+	0	NA	promoter-TSS (NM_021168)	promoter-TSS (NM_021168)	56	NM_001172664	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
182346	chr5	59188121	59189030	+	0	NA	intron (NM_001364600, intron 5 of 7)	intron (NM_001364600, intron 5 of 7)	87540	NM_001197220	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
115777	chr19	16356601	16356800	+	0	NA	intron (NR_047665, intron 22 of 22)	intron (NR_047665, intron 22 of 22)	31874	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
191686	chr6	13528271	13528430	+	0	NA	Intergenic	L1MA9|LINE|L1	-40713	NM_001242629	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
160763	chr3	32679101	32679480	+	0	NA	Intergenic	HSMAR2|DNA|TcMar-Mariner	-5898	NR_046352	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
221287	chr8	122917751	122918050	+	0	NA	intron (NM_001362797, intron 3 of 4)	MER117|DNA|hAT-Charlie	107872	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
194006	chr6	31792901	31793580	+	0	NA	intron (NM_006295, intron 2 of 29).4	intron (NM_006295, intron 2 of 29).4	2512	NM_006295	7407		NM_006295	ENSG00000204394	VARS1	G7A|NDMSCA|VARS|VARS2	valyl-tRNA synthetase 1	protein-coding
227496	chr9	91195301	91195500	+	0	NA	Intergenic	Intergenic	76338	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
144428	chr20	35438801	35439630	+	0	NA	promoter-TSS (NM_000557)	promoter-TSS (NM_000557)	-987	NM_000557	8200		NM_000557	ENSG00000125965	GDF5	BDA1C|BMP-14|BMP14|CDMP1|DUPANS|LAP-4|LAP4|OS5|SYM1B|SYNS2	growth differentiation factor 5	protein-coding
99263	chr17	49736251	49736350	+	0	NA	intron (NM_030802, intron 1 of 7)	AluYc|SINE|Alu	27831	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
14478	chr1	144521271	144522180	+	0	NA	Intergenic	Intergenic	30218	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
190583	chr5	181059271	181059630	+	0	NA	exon (NM_152547, exon 11 of 11)	exon (NM_152547, exon 11 of 11)	-15966	NR_107056	102465882		NR_107056	ENSG00000277912	MIR8089	hsa-mir-8089	microRNA 8089	ncRNA
12915	chr1	110634351	110635200	+	0	NA	Intergenic	Intergenic	-3335	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
73172	chr15	41486571	41487000	+	0	NA	Intergenic	CpG	-7089	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
82553	chr16	18560371	18561000	+	0	NA	intron (NM_173614, intron 1 of 30).2	intron (NM_173614, intron 1 of 30).2	1427	NM_173614	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
228217	chr9	97857871	97858950	+	0	NA	Intergenic	Intergenic	5184	NM_004473	2304		NM_004473	ENSG00000178919	FOXE1	BAMLAZ|FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2	forkhead box E1	protein-coding
199299	chr6	112027451	112028430	+	0	NA	Intergenic	L2a|LINE|L2	-26164	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
148046	chr20	63224601	63225050	+	0	NA	Intergenic	Intergenic	-8694	NM_017798	54915		NM_017798	ENSG00000149658	YTHDF1	C20orf21|DF1	YTH N6-methyladenosine RNA binding protein F1	protein-coding
174863	chr4	48711471	48711700	+	0	NA	intron (NM_015030, intron 1 of 63)	L1PA3|LINE|L1	68694	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
66835	chr14	64878971	64880880	+	0	NA	promoter-TSS (NM_001355437)	promoter-TSS (NM_001355437)	-18	NM_001355437	6710		NM_000347	ENSG00000070182	SPTB	EL3|HS2|HSPTB1|SPH2	spectrin beta, erythrocytic	protein-coding
236040	chrX	55508801	55509030	+	0	NA	Intergenic	Intergenic	-19717	NM_201286	158880		NM_201286	ENSG00000247746	USP51	-	ubiquitin specific peptidase 51	protein-coding
162833	chr3	49182151	49182450	+	0	NA	intron (NM_001080528, intron 2 of 3)	LTR12C|LTR|ERV1	9558	NM_001080528	646498		NM_001080528	ENSG00000236980	C3orf84	-	chromosome 3 open reading frame 84	protein-coding
203948	chr7	1550571	1551480	+	0	NA	intron (NM_001097620, intron 2 of 8)	CpG-25356	5180	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
198616	chr6	107735051	107735500	+	0	NA	intron (NM_001286408, intron 4 of 6)	intron (NM_001286408, intron 4 of 6)	-3125	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
20384	chr1	198158651	198159950	+	0	NA	intron (NM_133494, intron 1 of 9)	(AGGA)n|Simple_repeat|Simple_repeat	2302	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
111250	chr19	3524921	3525830	+	0	NA	intron (NM_001136198, intron 1 of 12)	intron (NM_001136198, intron 1 of 12)	2419	NM_001136198	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
47245	chr12	1122251	1123230	+	0	NA	intron (NM_178039, intron 6 of 17)	intron (NM_178039, intron 6 of 17)	94992	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
184526	chr5	102223871	102224130	+	0	NA	Intergenic	Intergenic	72284	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
95167	chr17	35158951	35159450	+	0	NA	intron (NM_173167, intron 6 of 18)	L3|LINE|CR1	10936	NM_173167	146862		NM_173167	ENSG00000141161	UNC45B	CMYA4|CTRCT43|MFM11|SMUNC45|UNC-45B|UNC45	unc-45 myosin chaperone B	protein-coding
28692	chr10	60788371	60788880	+	0	NA	intron (NM_001320918, intron 5 of 7)	LTR41C|LTR|ERVL	10147	NM_001786	983		NM_001786	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin dependent kinase 1	protein-coding
36	chr1	187451	187980	+	0	NA	TTS (NR_106918).2	TTS (NR_106918).2	243	NR_128720	103504738		NR_128720	ENSG00000278739	MIR6859-4	hsa-mir-6859-4	microRNA 6859-4	ncRNA
235995	chrX	54358721	54359150	+	0	NA	promoter-TSS (NM_001002838)	promoter-TSS (NM_001002838)	-889	NM_001002838	65267		NM_020922	ENSG00000196632	WNK3	MRXS2|PRKWNK3|PRS	WNK lysine deficient protein kinase 3	protein-coding
124703	chr2	3580851	3580950	+	0	NA	TTS (NM_001011)	TTS (NM_001011)	5640	NM_001011	6201		NM_001011	ENSG00000171863	RPS7	DBA8|S7|eS7	ribosomal protein S7	protein-coding
101062	chr17	64834171	64834530	+	0	NA	intron (NR_024386, intron 1 of 10)	intron (NR_024386, intron 1 of 10)	2834	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
234980	chrX	39477601	39478230	+	0	NA	Intergenic	Intergenic	-86141	NR_110385	101927449		NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
160081	chr3	18774771	18774930	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-329258	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
24858	chr10	516751	516850	+	0	NA	intron (NM_014974, intron 1 of 36)	intron (NM_014974, intron 1 of 36)	-111764	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
73712	chr15	45133521	45133780	+	0	NA	intron (NM_175940, intron 2 of 33)	intron (NM_175940, intron 2 of 33)	3656	NM_017434	53905		NM_017434	ENSG00000137857	DUOX1	LNOX1|NOXEF1|THOX1	dual oxidase 1	protein-coding
53182	chr12	59619551	59620330	+	0	NA	intron (NM_001270622, intron 1 of 5)	MIR|SINE|MIR	23911	NM_001270622	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
22074	chr1	211347001	211347200	+	0	NA	intron (NM_145759, intron 1 of 10)	intron (NM_145759, intron 1 of 10)	736	NM_145759	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
122713	chr19	49965621	49965880	+	0	NA	Intergenic	AluJb|SINE|Alu	-3914	NR_145574	400709		NM_001348364	ENSG00000161643	SIGLEC16	SIGLECP16|Siglec-P16	sialic acid binding Ig like lectin 16	protein-coding
111964	chr19	4831461	4832380	+	0	NA	promoter-TSS (NM_182919)	promoter-TSS (NM_182919)	-208	NM_001385678	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
10109	chr1	59019801	59020780	+	0	NA	promoter-TSS (NR_110626)	promoter-TSS (NR_110626)	-186	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
99803	chr17	51371751	51372050	+	0	NA	Intergenic	Intergenic	35185	NR_122104	440446		NR_122104	ENSG00000267452	LINC02072	-	long intergenic non-protein coding RNA 2072	ncRNA
125924	chr2	25045851	25046150	+	0	NA	intron (NM_001319099, intron 1 of 22)	intron (NM_001319099, intron 1 of 22)	3537	NM_001319099	22979		NM_014971	ENSG00000084710	EFR3B	KIAA0953	EFR3 homolog B	protein-coding
196925	chr6	52396921	52397250	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	-23257	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
233303	chr9	137379021	137379280	+	0	NA	intron (NR_104598, intron 4 of 10)	CpG	44012	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
228503	chr9	100124271	100124430	+	0	NA	intron (NR_134606, intron 2 of 16)	L1MDa|LINE|L1	25107	NM_014425	27130		NM_014425	ENSG00000119509	INVS	INV|NPH2|NPHP2	inversin	protein-coding
135673	chr2	168552471	168552630	+	0	NA	intron (NM_203463, intron 2 of 9)	intron (NM_203463, intron 2 of 9)	-30393	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
192016	chr6	16415471	16415830	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	177063	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
41501	chr11	66251071	66251230	+	0	NA	Intergenic	L2b|LINE|L2	-6144	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
45509	chr11	118692001	118692980	+	0	NA	Intergenic	Intergenic	-12840	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
225588	chr9	36135301	36135500	+	0	NA	Intergenic	Intergenic	-1136	NR_104638	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
24151	chr1	235856951	235857330	+	0	NA	intron (NM_001301365, intron 1 of 52)	AluSx3|SINE|Alu	-4080	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
1357	chr1	2499501	2500630	+	0	NA	intron (NM_001303013, intron 20 of 21)	intron (NM_001303013, intron 20 of 21)	23750	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
142646	chr20	5761921	5762950	+	0	NA	intron (NM_152504, intron 1 of 2)	intron (NM_152504, intron 1 of 2)	12034	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
231050	chr9	129628651	129629850	+	0	NA	intron (NM_001286799, intron 1 of 3)	intron (NM_001286799, intron 1 of 3)	2806	NM_001286799	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
121661	chr19	47494651	47495030	+	0	NA	intron (NR_038452, intron 2 of 3)	intron (NR_038452, intron 2 of 3)	10558	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
148824	chr21	8382971	8383630	+	0	NA	intron (NR_038958, intron 1 of 6).2	AluSx|SINE|Alu	2635	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
154482	chr22	35629801	35630800	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-6946	NM_001382809	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
116240	chr19	17545421	17545880	+	0	NA	intron (NM_173544, intron 13 of 15)	LTR13|LTR|ERVK	-9999	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
115621	chr19	16084371	16084630	+	0	NA	intron (NM_001367837, intron 2 of 7)	intron (NM_001367837, intron 2 of 7)	7484	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
35747	chr11	2136051	2136550	+	0	NA	intron (NM_001007139, intron 2 of 4)	intron (NM_001007139, intron 2 of 4)	988	NM_001291861	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
121805	chr19	47919871	47920730	+	0	NA	Intergenic	L1MC4|LINE|L1	1871	NR_004436	100126799		NR_004436		SNAR-A2	SNAR-A53129250	small NF90 (ILF3) associated RNA A2	snRNA
173447	chr4	8267201	8267430	+	0	NA	Intergenic	Intergenic	-2439	NM_053044	94031		NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
145458	chr20	43666571	43668000	+	0	NA	exon (NM_002466, exon 1 of 14)	exon (NM_002466, exon 1 of 14)	171	NM_002466	4605		NM_002466	ENSG00000101057	MYBL2	B-MYB|BMYB	MYB proto-oncogene like 2	protein-coding
122614	chr19	49803971	49804130	+	0	NA	intron (NM_014203, intron 19 of 23)	AluSz|SINE|Alu	9242	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
230832	chr9	129071521	129072400	+	0	NA	non-coding (NR_138424, exon 16 of 16)	non-coding (NR_138424, exon 16 of 16)	-9151	NM_020438	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
81204	chr16	4494221	4494730	+	0	NA	intron (NM_001286269, intron 2 of 6)	intron (NM_001286269, intron 2 of 6)	-1344	NM_001286270	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
142990	chr20	20233071	20233230	+	0	NA	intron (NM_015585, intron 18 of 26)	intron (NM_015585, intron 18 of 26)	-134954	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
160200	chr3	23829061	23829230	+	0	NA	intron (NM_003341, intron 3 of 5)	(ATT)n|Simple_repeat|Simple_repeat	18691	NM_001202476	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
166872	chr3	123642251	123642630	+	0	NA	intron (NM_053027, intron 27 of 32)	intron (NM_053027, intron 27 of 32)	-21892	NM_053032	4638		NM_005965	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MMIHS|MMIHS1|MSTP083|MYLK-L|MYLK1|smMLCK	myosin light chain kinase	protein-coding
171765	chr4	10021	10750	+	0	NA	Intergenic	TAR1|Satellite|telo	-42900	NM_001286054	152687		NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding
12845	chr1	110065951	110066400	+	0	NA	intron (NM_006492, intron 1 of 3)	intron (NM_006492, intron 1 of 3)	4497	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
232762	chr9	136671521	136672330	+	0	NA	intron (NR_046367, intron 8 of 9)	intron (NR_046367, intron 8 of 9)	1323	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
124260	chr19	57708471	57709480	+	0	NA	non-coding (NR_110974, exon 1 of 4)	non-coding (NR_110974, exon 1 of 4)	229	NR_110974	7710		NM_003444	ENSG00000179909	ZNF154	pHZ-92	zinc finger protein 154	protein-coding
194167	chr6	32096671	32097780	+	0	NA	exon (NM_001365276, exon 3 of 44).4	exon (NM_001365276, exon 3 of 44).4	12113	NM_019105	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
102578	chr17	75874921	75875180	+	0	NA	exon (NM_033452, exon 6 of 6)	exon (NM_033452, exon 6 of 6)	3531	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
185556	chr5	131368171	131368830	+	0	NA	intron (NM_001038702, intron 2 of 4)	L1ME3Cz|LINE|L1	104447	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
112911	chr19	7644921	7645900	+	0	NA	intron (NM_006949, intron 15 of 18)	intron (NM_006949, intron 15 of 18)	8300	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
152991	chr22	23152851	23153730	+	0	NA	intron (NM_004914, intron 5 of 10)	intron (NM_004914, intron 5 of 10)	7813	NR_146295	9609		NM_004914	ENSG00000100228	RAB36	-	RAB36, member RAS oncogene family	protein-coding
67664	chr14	73115921	73116180	+	0	NA	intron (NM_021239, intron 18 of 18)	intron (NM_021239, intron 18 of 18)	-20457	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
104332	chr17	80964271	80964630	+	0	NA	3' UTR (NM_001163034, exon 30 of 30)	3' UTR (NM_001163034, exon 30 of 30)	6763	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
180918	chr5	34306221	34306780	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-61776	NR_146599	114899		NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and TNF related 3	protein-coding
150647	chr21	43410501	43411100	+	0	NA	Intergenic	Intergenic	16331	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
18081	chr1	160673071	160674030	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-26239	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
47032	chr12	420021	420650	+	0	NA	intron (NM_032358, intron 5 of 12)	intron (NM_032358, intron 5 of 12)	18691	NM_032358	84318		NM_032358	ENSG00000120647	CCDC77	-	coiled-coil domain containing 77	protein-coding
135774	chr2	169691801	169692730	+	0	NA	intron (NM_001085447, intron 1 of 8)	MSTD|LTR|ERVL-MaLR	2140	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
3624	chr1	16376771	16377130	+	0	NA	intron (NR_073500, intron 1 of 1)	FLAM_A|SINE|Alu	9708	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
155756	chr22	39214451	39214750	+	0	NA	Intergenic	Intergenic	26309	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
73224	chr15	41623821	41624300	+	0	NA	Intergenic	AluSq2|SINE|Alu	-36352	NM_001164273	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
199434	chr6	117449751	117450150	+	0	NA	Intergenic	AluSz6|SINE|Alu	-24008	NM_001378891	6098		NM_002944	ENSG00000047936	ROS1	MCF3|ROS|c-ros-1	ROS proto-oncogene 1, receptor tyrosine kinase	protein-coding
80862	chr16	3568521	3568780	+	0	NA	intron (NR_075083, intron 1 of 20)	AluJb|SINE|Alu	8753	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
92118	chr17	7590251	7590350	+	0	NA	promoter-TSS (NM_006942)	promoter-TSS (NM_006942)	-206	NM_006942	6665		NM_006942	ENSG00000129194	SOX15	SOX20|SOX26|SOX27	SRY-box transcription factor 15	protein-coding
133652	chr2	127052151	127052250	+	0	NA	intron (NM_139350, intron 10 of 13)	intron (NM_139350, intron 10 of 13)	29865	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
222630	chr8	141106701	141106900	+	0	NA	Intergenic	L1MB5|LINE|L1	-21789	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
39695	chr11	61736851	61737750	+	0	NA	exon (NM_006133, exon 14 of 20)	exon (NM_006133, exon 14 of 20)	-15336	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
122136	chr19	48860951	48861050	+	0	NA	intron (NM_020904, intron 5 of 19)	AluSx|SINE|Alu	7617	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
4443	chr1	21307101	21308300	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	14410	NR_038404	100506801		NR_038404	ENSG00000231105	ECE1-AS1	-	ECE1 antisense RNA 1	ncRNA
203204	chr6	167795551	167795850	+	0	NA	non-coding (NR_149041, exon 1 of 1)	non-coding (NR_149041, exon 1 of 1)	171	NR_149041	441179		NR_149041	ENSG00000269155	LOC441179	-	uncharacterized LOC441179	ncRNA
33414	chr10	118669271	118669930	+	0	NA	Intergenic	Intergenic	-73952	NM_004248	2834		NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
9988	chr1	55069921	55070180	+	0	NA	intron (NM_015306, intron 67 of 67)	intron (NM_015306, intron 67 of 67)	29828	NR_110451	255738		NM_174936	ENSG00000169174	PCSK9	FH3|FHCL3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
60058	chr13	33033321	33033780	+	0	NA	intron (NM_004795, intron 1 of 4)	L2a|LINE|L2	17127	NM_004795	9365		NM_004795	ENSG00000133116	KL	HFTC3|KLA	klotho	protein-coding
92811	chr17	16016671	16016830	+	0	NA	intron (NM_017775, intron 7 of 9)	AluSx|SINE|Alu	16926	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
61756	chr13	74251771	74252580	+	0	NA	intron (NR_144451, intron 1 of 1)	intron (NR_144451, intron 1 of 1)	20731	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
40894	chr11	65128771	65129150	+	0	NA	TTS (NR_106809)	TTS (NR_106809)	1018	NR_106809	102465449		NR_106809	ENSG00000284489	MIR6751	hsa-mir-6751	microRNA 6751	ncRNA
16877	chr1	155835071	155835230	+	0	NA	intron (NM_001282861, intron 2 of 20)	SVA_D|Retroposon|SVA	22064	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
170106	chr3	183159371	183159730	+	0	NA	intron (NM_014398, intron 1 of 5)	intron (NM_014398, intron 1 of 5)	3184	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
133902	chr2	130172721	130172980	+	0	NA	exon (NM_017751, exon 6 of 19)	exon (NM_017751, exon 6 of 19)	8752	NR_033231	55627		NM_017751	ENSG00000136699	SMPD4	NEDMABA|NEDMEBA|NET13|NSMASE-3|NSMASE3|SKNY	sphingomyelin phosphodiesterase 4	protein-coding
39660	chr11	61679651	61681030	+	0	NA	promoter-TSS (NM_006133)	promoter-TSS (NM_006133)	-51	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
171839	chr4	688721	689830	+	0	NA	promoter-TSS (NM_001378061)	promoter-TSS (NM_001378061)	-124	NM_001294342	84179		NM_032219	ENSG00000169026	SLC49A3	LP2561|MFSD7	solute carrier family 49 member 3	protein-coding
34298	chr10	131976501	131976700	+	0	NA	intron (NM_004052, intron 1 of 5)	(CCAACC)n|Simple_repeat|Simple_repeat	5413	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
91386	chr17	4576001	4576200	+	0	NA	Intergenic	Intergenic	-7907	NM_198501	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
225949	chr9	41064021	41065050	+	0	NA	intron (NR_002836, intron 1 of 8)	intron (NR_002836, intron 1 of 8)	10090	NR_002836	595135		NR_002836	ENSG00000290923	PGM5P2	-	phosphoglucomutase 5 pseudogene 2	pseudo
113584	chr19	10274971	10275130	+	0	NA	intron (NM_000201, intron 2 of 6)	intron (NM_000201, intron 2 of 6)	3930	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
125199	chr2	10235301	10236100	+	0	NA	Intergenic	Intergenic	-43029	NR_036222	100422929		NR_036222	ENSG00000265418	MIR4261	-	microRNA 4261	ncRNA
96121	chr17	39646001	39646200	+	0	NA	intron (NM_001165938, intron 1 of 13)	AluSx|SINE|Alu	8956	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
21518	chr1	205791621	205792030	+	0	NA	intron (NM_173854, intron 10 of 10)	intron (NM_173854, intron 10 of 10)	-16343	NM_003929	8934		NM_003929	ENSG00000117280	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
54493	chr12	92078951	92079450	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	62513	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
177289	chr4	109578851	109579150	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	18754	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
96828	chr17	41962071	41962230	+	0	NA	intron (NM_031421, intron 11 of 11)	MIRb|SINE|MIR	-4645	NM_033133	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
64958	chr14	36019151	36019450	+	0	NA	Intergenic	Intergenic	-51127	NR_073454	101101773		NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
55607	chr12	106910271	106910530	+	0	NA	Intergenic	AluJo|SINE|Alu	-45322	NM_001319666	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
116573	chr19	18242201	18243150	+	0	NA	intron (NM_000923, intron 1 of 15)	AluSx|SINE|Alu	5525	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
125042	chr2	9606101	9606700	+	0	NA	intron (NM_006826, intron 2 of 5)	AluSx|SINE|Alu	24597	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
119770	chr19	41300771	41301350	+	0	NA	intron (NM_144732, intron 10 of 14)	intron (NM_144732, intron 10 of 14)	-9112	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
213928	chr7	142615521	142616480	+	0	NA	intron (NM_001363538, intron 11 of 11)	Charlie16a|DNA|hAT-Charlie	-50299	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
136521	chr2	177251551	177253580	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	3445	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
19525	chr1	176177801	176178230	+	0	NA	intron (NM_022457, intron 2 of 19)	intron (NM_022457, intron 2 of 19)	29229	NM_001001740	64326		NM_022457	ENSG00000143207	COP1	CFAP78|FAP78|RFWD2|RNF200	COP1 E3 ubiquitin ligase	protein-coding
21382	chr1	205226371	205226600	+	0	NA	Intergenic	Intergenic	-1461	NM_014858	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
190231	chr5	178247421	178248100	+	0	NA	intron (NM_173465, intron 21 of 28)	intron (NM_173465, intron 21 of 28)	-14938	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
233009	chr9	137011871	137012530	+	0	NA	intron (NM_212533, intron 33 of 48)	(GCCCC)n|Simple_repeat|Simple_repeat	-15264	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
204933	chr7	6250471	6250700	+	0	NA	intron (NM_004227, intron 1 of 12)	L1MB7|LINE|L1	22039	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
103007	chr17	76841201	76841400	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-14866	NR_135283	283994		NR_135283	ENSG00000267535	LINC00868	C17orf52	long intergenic non-protein coding RNA 868	ncRNA
69914	chr14	99513251	99513980	+	0	NA	3' UTR (NM_001144995, exon 6 of 6)	3' UTR (NM_001144995, exon 6 of 6)	32206	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
193759	chr6	31344851	31345430	+	0	NA	Intergenic	LTR39|LTR|ERV1	10176	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
174714	chr4	42643471	42643950	+	0	NA	intron (NM_001105529, intron 1 of 35)	MER5B|DNA|hAT-Charlie	13395	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
43618	chr11	83185821	83186200	+	0	NA	non-coding (NR_133914, exon 1 of 1)	non-coding (NR_133914, exon 1 of 1)	1474	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
151020	chr21	44486171	44486530	+	0	NA	intron (NR_155204, intron 1 of 1)	HUERS-P2-int|LTR|ERV1	779	NR_155204	111216286		NR_155204		LINC02575	-	long intergenic non-protein coding RNA 2575	ncRNA
44868	chr11	114193121	114193380	+	0	NA	intron (NM_001354751, intron 4 of 6)	intron (NM_001354751, intron 4 of 6)	-64556	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
194239	chr6	32439201	32440200	+	0	NA	promoter-TSS (NM_019111).6	promoter-TSS (NM_019111).6	-187	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
163900	chr3	52524421	52524730	+	0	NA	TTS (NM_015136)	TTS (NM_015136)	9282	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
88155	chr16	81678271	81679000	+	0	NA	intron (NM_030629, intron 10 of 20)	CpG-9979	13281	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
158574	chr3	4582001	4582400	+	0	NA	intron (NM_002222, intron 4 of 57)	intron (NM_002222, intron 4 of 57)	88852	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
30264	chr10	75127421	75127680	+	0	NA	intron (NM_144660, intron 1 of 4)	MIR|SINE|MIR	15894	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
44161	chr11	96211401	96211900	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-129788	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
14036	chr1	120745101	120745500	+	0	NA	intron (NR_157049, intron 1 of 4)	MER112|DNA|hAT-Charlie	21361	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
160814	chr3	33025621	33025880	+	0	NA	intron (NM_000404, intron 10 of 15)	MER52D|LTR|ERV1	71082	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
180692	chr5	21486971	21487130	+	0	NA	intron (NR_027026, intron 3 of 4)	THE1B|LTR|ERVL-MaLR	27570	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
49104	chr12	14756371	14756700	+	0	NA	Intergenic	Intergenic	14596	NM_175054	121504		NM_175054	ENSG00000197837	H4C16	H4-16|H4/p|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST4H4	H4 histone 16	protein-coding
141021	chr2	238167951	238168630	+	0	NA	3' UTR (NM_001291832, exon 8 of 8)	3' UTR (NM_001291832, exon 8 of 8)	9320	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
103834	chr17	79442251	79442350	+	0	NA	intron (NM_001082575, intron 2 of 14)	(AGAG)n|Simple_repeat|Simple_repeat	73848	NM_001082575	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
82314	chr16	15674771	15674930	+	0	NA	intron (NM_017668, intron 3 of 8)	AluJb|SINE|Alu	24605	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
164383	chr3	58304501	58304700	+	0	NA	Intergenic	L2a|LINE|L2	-1645	NM_001348713	109703458		NM_001348712	ENSG00000255154	HTD2	-	hydroxyacyl-thioester dehydratase type 2	protein-coding
163650	chr3	52157571	52157930	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-3327	NM_001161581	25886		NM_015426	ENSG00000164087	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
176416	chr4	89243421	89244480	+	0	NA	3' UTR (NM_198281, exon 2 of 2)	3' UTR (NM_198281, exon 2 of 2)	63850	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
7758	chr1	36172251	36172700	+	0	NA	exon (NM_018067, exon 4 of 17)	exon (NM_018067, exon 4 of 17)	16315	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
60126	chr13	39034551	39035600	+	0	NA	intron (NM_025138, intron 1 of 12)	intron (NM_025138, intron 1 of 12)	3001	NM_170719	80209		NM_025138	ENSG00000120685	PROSER1	C13orf23	proline and serine rich 1	protein-coding
183218	chr5	76294601	76294800	+	0	NA	intron (NM_014979, intron 8 of 12)	MER33|DNA|hAT-Charlie	-108585	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
118055	chr19	34268551	34269130	+	0	NA	intron (NM_014686, intron 1 of 13)	intron (NM_014686, intron 1 of 13)	14286	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
114915	chr19	13951751	13953250	+	0	NA	promoter-TSS (NM_138353)	promoter-TSS (NM_138353)	26	NM_138353	90379		NM_138353	ENSG00000132017	DCAF15	C19orf72	DDB1 and CUL4 associated factor 15	protein-coding
154995	chr22	37311771	37312630	+	0	NA	intron (NM_001318024, intron 12 of 12)	intron (NM_001318024, intron 12 of 12)	29692	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
99071	chr17	48947771	48948430	+	0	NA	Intergenic	Intergenic	-3258	NM_001317192	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
45421	chr11	118392571	118392930	+	0	NA	exon (NM_001204077, exon 19 of 20)	exon (NM_001204077, exon 19 of 20)	-8639	NR_033759	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
1585	chr1	3599651	3600050	+	0	NA	intron (NM_001409, intron 2 of 36)	intron (NM_001409, intron 2 of 36)	11658	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
41429	chr11	66064901	66065100	+	0	NA	intron (NM_006842, intron 19 of 21)	AluSz6|SINE|Alu	-5272	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
83057	chr16	22333051	22333150	+	0	NA	intron (NM_018119, intron 20 of 20).2	AluSp|SINE|Alu	35691	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
61083	chr13	48401621	48401950	+	0	NA	intron (NM_000321, intron 17 of 26)	intron (NM_000321, intron 17 of 26)	11328	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
111132	chr19	3272601	3272800	+	0	NA	intron (NM_021938, intron 2 of 12)	intron (NM_021938, intron 2 of 12)	47422	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
71287	chr14	105281671	105282100	+	0	NA	intron (NM_001242788, intron 1 of 16)	intron (NM_001242788, intron 1 of 16)	-18889	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
174613	chr4	40289421	40290230	+	0	NA	Intergenic	L2|LINE|L2	-17360	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
142679	chr20	6052321	6052580	+	0	NA	exon (NM_152611, exon 2 of 5)	exon (NM_152611, exon 2 of 5)	1610	NM_152611	164312		NM_152611	ENSG00000125872	LRRN4	C20orf75|NLRR-4|NLRR4|dJ1056H1.1	leucine rich repeat neuronal 4	protein-coding
187991	chr5	149526351	149526450	+	0	NA	intron (NM_001892, intron 2 of 9)	AluJo|SINE|Alu	23965	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
133535	chr2	120250651	120251030	+	0	NA	Intergenic	Intergenic	-2012	NM_002881	5899		NM_002881	ENSG00000144118	RALB	-	RAS like proto-oncogene B	protein-coding
128335	chr2	54716671	54717030	+	0	NA	Intergenic	Intergenic	-8162	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
198866	chr6	109443801	109444500	+	0	NA	TTS (NM_001159291)	TTS (NM_001159291)	-2979	NM_001111298	285755		NM_173672	ENSG00000185250	PPIL6	PPIase|RSPH12|bA425D10.6|dJ919F19.1	peptidylprolyl isomerase like 6	protein-coding
32649	chr10	103758851	103759480	+	0	NA	intron (NM_014631, intron 3 of 13)	intron (NM_014631, intron 3 of 13)	12386	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
119123	chr19	39351321	39352100	+	0	NA	intron (NM_001384594, intron 2 of 13)	MLT1K|LTR|ERVL-MaLR	9289	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
201427	chr6	147131871	147132030	+	0	NA	intron (NR_034115, intron 3 of 10)	UCON78|DNA|DNA	-26975	NR_132442	106182249		NR_132442	ENSG00000196634	LUADT1	-	lung adenocarcinoma associated transcript 1	ncRNA
131429	chr2	96290601	96291000	+	0	NA	exon (NM_014014, exon 19 of 45)	exon (NM_014014, exon 19 of 45)	14746	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
10936	chr1	84152371	84153800	+	0	NA	intron (NM_182948, intron 1 of 9)	Tigger1|DNA|TcMar-Tigger	8814	NM_001300916	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
178003	chr4	139302001	139302850	+	0	NA	promoter-TSS (NM_001184989)	promoter-TSS (NM_001184989)	52	NM_001184989	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
38247	chr11	36505071	36505680	+	0	NA	intron (NM_145803, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	4897	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
161731	chr3	44208071	44208630	+	0	NA	Intergenic	L1MB8|LINE|L1	-33536	NM_001145030	375337		NM_001145030	ENSG00000173769	TOPAZ1	C3orf77	testis and ovary specific TOPAZ 1	protein-coding
64241	chr14	23109251	23109550	+	0	NA	Intergenic	Intergenic	-4411	NM_001354640	100128908		NM_001354640	ENSG00000283654	CIROP	HTX12|LMLN2	ciliated left-right organizer metallopeptidase	protein-coding
139171	chr2	219202371	219202530	+	0	NA	Intergenic	AluSx3|SINE|Alu	-4332	NM_138802	130617		NM_138802	ENSG00000158552	ZFAND2B	AIRAPL	zinc finger AN1-type containing 2B	protein-coding
175088	chr4	54107001	54107200	+	0	NA	Intergenic	Intergenic	6937	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
61276	chr13	50119551	50119850	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	5841	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
227885	chr9	93949201	93950250	+	0	NA	Intergenic	Intergenic	5630	NM_021570	56033		NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
84363	chr16	30230621	30230880	+	0	NA	intron (NM_001321892, intron 6 of 8)	AluSx|SINE|Alu	15105	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
126480	chr2	28388271	28388580	+	0	NA	intron (NR_103831, intron 1 of 1)	LTR33|LTR|ERVL	-4433	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
102986	chr17	76732101	76732830	+	0	NA	intron (NM_001378348, intron 2 of 4)	AluSp|SINE|Alu	4083	NR_030366	693221		NR_030366	ENSG00000283805	MIR636	MIRN636|hsa-mir-636	microRNA 636	ncRNA
96730	chr17	41668101	41668780	+	0	NA	Intergenic	L2c|LINE|L2	-20445	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
58311	chr12	130916251	130916350	+	0	NA	Intergenic	Intergenic	-37607	NM_198827	283383		NM_198827	ENSG00000111452	ADGRD1	GPR133|PGR25	adhesion G protein-coupled receptor D1	protein-coding
87289	chr16	70058171	70058330	+	0	NA	intron (NR_003610, intron 1 of 25)	intron (NR_003610, intron 1 of 25)	7698	NR_003610	283970		NM_199134	ENSG00000196696	PDXDC2P-NPIPB14P	-	PDXDC2P-NPIPB14P readthrough, transcribed pseudogene	pseudo
19899	chr1	183915871	183916460	+	0	NA	intron (NM_015149, intron 16 of 18)	intron (NM_015149, intron 16 of 18)	111045	NM_001297671	23179		NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
140675	chr2	234071621	234072000	+	0	NA	intron (NM_006944, intron 7 of 7)	L2b|LINE|L2	21108	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
198898	chr6	109595901	109596200	+	0	NA	intron (NM_001145128, intron 17 of 40)	intron (NM_001145128, intron 17 of 40)	95162	NR_138057	221264		NM_145025	ENSG00000155085	AK9	AK 9|AKD1|AKD2|C6orf199|C6orf224|SPGF89|dJ70A9.1	adenylate kinase 9	protein-coding
159987	chr3	18344351	18344900	+	0	NA	TTS (NM_001322872)	TTS (NM_001322872)	80714	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
29037	chr10	67666501	67666700	+	0	NA	promoter-TSS (NM_001127384)	promoter-TSS (NM_001127384)	-915	NM_001127384	29119		NM_013266	ENSG00000183230	CTNNA3	ARVD13|VR22	catenin alpha 3	protein-coding
54075	chr12	76043621	76044130	+	0	NA	TTS (NM_001330232)	TTS (NM_001330232)	-12099	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
90193	chr17	409471	410600	+	0	NA	promoter-TSS (NM_001013672).2	promoter-TSS (NM_001013672).2	-290	NM_001013672	400566		NM_001013672	ENSG00000187624	LIAT1	C17orf97|CK20	ligand of ATE1	protein-coding
235726	chrX	48916771	48918300	+	0	NA	intron (NM_006875, intron 3 of 5)	intron (NM_006875, intron 3 of 5)	1489	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
1887	chr1	6438021	6438750	+	0	NA	intron (NM_031475, intron 2 of 12)	MIRb|SINE|MIR	-8489	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
188673	chr5	157264551	157264750	+	0	NA	Intergenic	MIRc|SINE|MIR	-1473	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
178309	chr4	145299421	145300080	+	0	NA	Intergenic	Intergenic	40669	NR_147156	105377466		NR_147156	ENSG00000272727	LINC02266	-	long intergenic non-protein coding RNA 2266	ncRNA
200753	chr6	137810871	137812550	+	0	NA	Intergenic	Intergenic	-55549	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
137251	chr2	192072301	192072800	+	0	NA	intron (NM_001305134, intron 4 of 9)	intron (NM_001305134, intron 4 of 9)	122383	NM_016192	23671		NM_016192	ENSG00000144339	TMEFF2	CT120.2|HPP1|TENB2|TPEF|TR|TR-2	transmembrane protein with EGF like and two follistatin like domains 2	protein-coding
216457	chr8	19602201	19602400	+	0	NA	non-coding (NR_148902, exon 1 of 12)	non-coding (NR_148902, exon 1 of 12)	245	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
168707	chr3	150680821	150681300	+	0	NA	intron (NM_001308234, intron 7 of 13)	L1MB7|LINE|L1	-22504	NR_121675	101928085		NR_121674	ENSG00000240137	ERICH6-AS1	-	ERICH6 antisense RNA 1	ncRNA
193931	chr6	31648471	31649180	+	0	NA	intron (NM_080702, intron 5 of 24).6	intron (NM_080702, intron 5 of 24).6	3565	NM_001098534	7917		NM_004639	ENSG00000204463	BAG6	BAG-6|BAT3|D6S52E|G3	BAG cochaperone 6	protein-coding
46784	chr11	130044271	130044430	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-25544	NM_001382529	334		NM_001642	ENSG00000084234	APLP2	APLP-2|APPH|APPL2|CDEBP	amyloid beta precursor like protein 2	protein-coding
237562	chrX	120753471	120753630	+	0	NA	Intergenic	Intergenic	122375	NM_001145718	643311		NM_001145718	ENSG00000236446	CT47B1	CT47.13|CT47A13	cancer/testis antigen family 47 member B1	protein-coding
87938	chr16	79372121	79373080	+	0	NA	Intergenic	Intergenic	228137	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
189445	chr5	172984301	172985050	+	0	NA	intron (NM_003945, intron 1 of 3)	intron (NM_003945, intron 1 of 3)	904	NM_003945	8992		NM_003945	ENSG00000113732	ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase H+ transporting V0 subunit e1	protein-coding
210228	chr7	99362151	99362600	+	0	NA	intron (NM_001190996, intron 8 of 9)	AluY|SINE|Alu	-12355	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
77503	chr15	84645471	84645630	+	0	NA	non-coding (NR_130947, exon 6 of 7)	non-coding (NR_130947, exon 6 of 7)	8696	NR_130944	84942		NM_032856	ENSG00000177082	WDR73	GAMOS|GAMOS1|HSPC264	WD repeat domain 73	protein-coding
107778	chr18	51044621	51045080	+	0	NA	intron (NM_005359, intron 1 of 11)	intron (NM_005359, intron 1 of 11)	14637	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
108443	chr18	70166001	70166280	+	0	NA	exon (NM_173630, exon 14 of 49)	exon (NM_173630, exon 14 of 49)	39547	NM_001318520	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
52709	chr12	56581321	56582350	+	0	NA	exon (NM_002898, exon 8 of 14)	exon (NM_002898, exon 8 of 14)	48491	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
161959	chr3	46269421	46270180	+	0	NA	Intergenic	Intergenic	27340	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
225976	chr9	41229471	41229630	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4205	NR_039688	100616184		NR_039688	ENSG00000276029	MIR4477A	-	microRNA 4477a	ncRNA
127513	chr2	42296121	42296580	+	0	NA	intron (NM_019063, intron 13 of 22)	intron (NM_019063, intron 13 of 22)	63688	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
31802	chr10	98425621	98426030	+	0	NA	exon (NM_001322481, exon 10 of 18)	exon (NM_001322481, exon 10 of 18)	5535	NR_039833	100616482		NR_039833	ENSG00000264610	MIR4685	-	microRNA 4685	ncRNA
24410	chr1	243255701	243256750	+	0	NA	promoter-TSS (NM_001042404).2	promoter-TSS (NM_001042404).2	184	NM_006642	10806		NM_006642	ENSG00000054282	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|HSPC085|NPHP10|NY-CO-8|SLSN7|hCCCAP	SHH signaling and ciliogenesis regulator SDCCAG8	protein-coding
231444	chr9	131260501	131262480	+	0	NA	intron (NM_033387, intron 1 of 1)	intron (NM_033387, intron 1 of 1)	15020	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
57143	chr12	121237671	121237830	+	0	NA	TTS (NM_001270486)	TTS (NM_001270486)	27621	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
200904	chr6	139125001	139125730	+	0	NA	Intergenic	MIR|SINE|MIR	-9715	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
186032	chr5	134006871	134007030	+	0	NA	Intergenic	Intergenic	-1975	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
109675	chr19	1027201	1027500	+	0	NA	intron (NM_201277, intron 1 of 5)	intron (NM_201277, intron 1 of 5)	742	NM_001303501	1265		NM_004368	ENSG00000064666	CNN2	-	calponin 2	protein-coding
6100	chr1	27321721	27323380	+	0	NA	intron (NR_037576, intron 1 of 6)	intron (NR_037576, intron 1 of 6)	305	NR_037577	84065		NM_032125	ENSG00000186501	TMEM222	C1orf160|NEDMOSBA	transmembrane protein 222	protein-coding
50975	chr12	49556871	49557030	+	0	NA	intron (NM_001314030, intron 13 of 14)	intron (NM_001314030, intron 13 of 14)	9489	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
37910	chr11	34102771	34103780	+	0	NA	TTS (NM_005898)	TTS (NM_005898)	-2354	NM_001144030	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
191700	chr6	13660201	13660400	+	0	NA	intron (NM_005493, intron 2 of 13)	AluJb|SINE|Alu	44965	NM_016167	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
86961	chr16	68129851	68129950	+	0	NA	intron (NM_173165, intron 3 of 9)	AluJr|SINE|Alu	44530	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
156262	chr22	40412471	40413730	+	0	NA	intron (NM_001282661, intron 13 of 13)	AluSz|SINE|Alu	42506	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
130202	chr2	84518871	84519430	+	0	NA	intron (NM_001370, intron 2 of 76)	MLT1G1|LTR|ERVL-MaLR	2652	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
10307	chr1	64862801	64863300	+	0	NA	intron (NM_001321857, intron 8 of 24)	intron (NM_001321857, intron 8 of 24)	103499	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
161609	chr3	43207851	43207950	+	0	NA	Intergenic	Intergenic	-78612	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
136870	chr2	187988321	187988580	+	0	NA	Intergenic	LTR9C|LTR|ERV1	299241	NR_126396	104355152		NR_126396	ENSG00000231689	LINC01090	-	long intergenic non-protein coding RNA 1090	ncRNA
123356	chr19	53883001	53883830	+	0	NA	intron (NM_001316329, intron 2 of 18)	intron (NM_001316329, intron 2 of 18)	1218	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
138556	chr2	207624421	207626510	+	0	NA	promoter-TSS (NM_001127395)	promoter-TSS (NM_001127395)	-71	NM_001330130	151194		NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase 21A, HSPA lysine	protein-coding
29814	chr10	72306971	72307330	+	0	NA	Intergenic	Intergenic	33226	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
164089	chr3	56554671	56554830	+	0	NA	Intergenic	AluY|SINE|Alu	-2406	NR_148372	285331		NM_001012506	ENSG00000180376	CCDC66	-	coiled-coil domain containing 66	protein-coding
23601	chr1	230103671	230104030	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	36612	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
221235	chr8	121756801	121757000	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-115460	NM_005328	3037		NM_005328	ENSG00000170961	HAS2	-	hyaluronan synthase 2	protein-coding
224183	chr9	5353651	5353750	+	0	NA	Intergenic	Intergenic	-13824	NM_006911	6013		NM_006911	ENSG00000107018	RLN1	H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2	relaxin 1	protein-coding
237475	chrX	119785901	119786500	+	0	NA	TTS (NM_001000)	TTS (NM_001000)	1284	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
136345	chr2	175690171	175690400	+	0	NA	Intergenic	Intergenic	311982	NM_030650	80856		NM_030650	ENSG00000144320	LNPK	KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding
203810	chr7	1297051	1297350	+	0	NA	Intergenic	Intergenic	64328	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
200654	chr6	137043971	137044980	+	0	NA	promoter-TSS (NM_001278722)	promoter-TSS (NM_001278722)	-163	NM_001278722	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
188774	chr5	157670601	157672100	+	0	NA	promoter-TSS (NM_001145132)	promoter-TSS (NM_001145132)	130	NM_001308165	11063		NM_007017	ENSG00000039600	SOX30	-	SRY-box transcription factor 30	protein-coding
85175	chr16	46817671	46818030	+	0	NA	intron (NM_001001436, intron 2 of 3)	intron (NM_001001436, intron 2 of 3)	13198	NR_145837	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
113036	chr19	7945501	7946000	+	0	NA	Intergenic	AluY|SINE|Alu	-2084	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
490	chr1	1171571	1172380	+	0	NA	Intergenic	Intergenic	-1905	NM_001130045	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
140941	chr2	237740721	237741180	+	0	NA	intron (NM_001137550, intron 11 of 23)	intron (NM_001137550, intron 11 of 23)	48745	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
230442	chr9	128163601	128164350	+	0	NA	TTS (NM_024112)	TTS (NM_024112)	3710	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
173837	chr4	20915121	20915380	+	0	NA	intron (NM_147182, intron 2 of 8)	intron (NM_147182, intron 2 of 8)	-32540	NM_025221	80333		NM_025221	ENSG00000185774	KCNIP4	CALP|KCHIP4	potassium voltage-gated channel interacting protein 4	protein-coding
211885	chr7	111097021	111097280	+	0	NA	intron (NM_001099660, intron 2 of 3)	intron (NM_001099660, intron 2 of 3)	6023	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
201902	chr6	151323971	151324700	+	0	NA	intron (NM_005100, intron 3 of 4)	intron (NM_005100, intron 3 of 4)	-1196	NM_144497	9590		NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
48517	chr12	9950871	9951630	+	0	NA	promoter-TSS (NM_001207010)	promoter-TSS (NM_001207010)	-18	NM_001207010	160364		NM_138337	ENSG00000172322	CLEC12A	CD371|CLL-1|CLL1|DCAL-2|MICL	C-type lectin domain family 12 member A	protein-coding
142697	chr20	8131851	8133030	+	0	NA	5' UTR (NM_182734, exon 1 of 33)	5' UTR (NM_182734, exon 1 of 33)	174	NM_182734	23236		NM_015192	ENSG00000182621	PLCB1	DEE12|EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B	phospholipase C beta 1	protein-coding
38589	chr11	46241551	46242050	+	0	NA	Intergenic	AluSp|SINE|Alu	-35862	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
78816	chr15	99614301	99614500	+	0	NA	intron (NM_001352615, intron 3 of 12)	intron (NM_001352615, intron 3 of 12)	-18578	NM_001130928	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
54820	chr12	94725771	94726000	+	0	NA	Intergenic	Intergenic	-75328	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
49092	chr12	14473521	14473930	+	0	NA	intron (NM_181352, intron 10 of 14)	L1M4a1|LINE|L1	88444	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
205288	chr7	10704721	10704800	+	0	NA	intron (NR_149037, intron 1 of 1)	L2b|LINE|L2	2084	NR_149037	100131472		NR_149037		LOC100131472	-	uncharacterized LOC100131472	ncRNA
223165	chr8	143539101	143539300	+	0	NA	exon (NM_015117, exon 2 of 12)	exon (NM_015117, exon 2 of 12)	2247	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
85416	chr16	50320451	50320750	+	0	NA	intron (NM_013263, intron 14 of 16)	intron (NM_013263, intron 14 of 16)	27984	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
235522	chrX	47215321	47216350	+	0	NA	TTS (NM_153280)	TTS (NM_153280)	-2468	NM_033018	5127		NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
32341	chr10	102247501	102248300	+	0	NA	intron (NM_001377141, intron 1 of 39)	intron (NM_001377141, intron 1 of 39)	2368	NR_165088	8729		NM_004193	ENSG00000107862	GBF1	ARF1GEF|CMT2GG|CMTDI2|CMTDIA	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
131204	chr2	95043201	95043830	+	0	NA	intron (NM_022440, intron 1 of 1)	MIRb|SINE|MIR	17807	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
19656	chr1	180252271	180252980	+	0	NA	intron (NM_033343, intron 2 of 5)	intron (NM_033343, intron 2 of 5)	22056	NR_037642	100527964		NR_037642	ENSG00000230124	LHX4-AS1	-	LHX4 antisense RNA 1	ncRNA
208203	chr7	65077671	65078230	+	0	NA	Intergenic	Intergenic	7412	NR_145713	109617022		NR_145713	ENSG00000206785	SNORA15B-2	SNORA15C	small nucleolar RNA, H/ACA box 15B-2	snoRNA
92242	chr17	7912621	7913700	+	0	NA	TTS (NM_001005273)	TTS (NM_001005273)	3129	NM_001358699	284023		NM_001358699	ENSG00000179859	RNF227	LINC02581	ring finger protein 227	protein-coding
89064	chr16	88454401	88455770	+	0	NA	intron (NM_153813, intron 1 of 9)	CpG	1805	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
160257	chr3	25648001	25648650	+	0	NA	intron (NM_001330700, intron 1 of 35)	intron (NM_001330700, intron 1 of 35)	16047	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
209191	chr7	75413951	75414450	+	0	NA	intron (NR_104013, intron 4 of 7)	intron (NR_104013, intron 4 of 7)	3878	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
104717	chr17	81557851	81558530	+	0	NA	non-coding (NR_130140, exon 3 of 3)	non-coding (NR_130140, exon 3 of 3)	-5837	NM_025161	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
16678	chr1	155190101	155190600	+	0	NA	intron (NM_001371720, intron 5 of 11)	CpG-1793	2559	NM_001204287	4582		NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|ADTKD2|CA 15-3|CD227|Ca15-3|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding
201652	chr6	149480371	149481600	+	0	NA	intron (NM_207360, intron 1 of 5)	intron (NM_207360, intron 1 of 5)	4029	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
234719	chrX	21655971	21656130	+	0	NA	exon (NM_153270, exon 1 of 1)	exon (NM_153270, exon 1 of 1)	2280	NM_153270	257240		NM_153270	ENSG00000185915	KLHL34	-	kelch like family member 34	protein-coding
59424	chr13	25308051	25308350	+	0	NA	intron (NM_001008564, intron 2 of 14)	intron (NM_001008564, intron 2 of 14)	6575	NM_001008564	9818		NM_014089	ENSG00000139496	NUP58	NUP45|NUPL1|PRO2463	nucleoporin 58	protein-coding
166428	chr3	113748951	113749650	+	0	NA	intron (NM_001690, intron 1 of 14)	(CA)n|Simple_repeat|Simple_repeat	2265	NM_001690	523		NM_001690	ENSG00000114573	ATP6V1A	ARCL2D|ATP6A1|ATP6V1A1|DEE93|HO68|IECEE3|VA68|VPP2|Vma1	ATPase H+ transporting V1 subunit A	protein-coding
71549	chr14	106267951	106268750	+	0	NA	Intergenic	Intergenic	-19324	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
75541	chr15	66703571	66704580	+	0	NA	non-coding (NR_027654, exon 1 of 5)	non-coding (NR_027654, exon 1 of 5)	1839	NR_027654	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
237766	chrX	129758001	129758500	+	0	NA	intron (NM_003399, intron 14 of 20)	intron (NM_003399, intron 14 of 20)	19271	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
226041	chr9	43127851	43128220	+	0	NA	intron (NR_160669, intron 1 of 3)	intron (NR_160669, intron 1 of 3)	1869	NR_160669	102724904		NR_160669	ENSG00000291167	LOC102724904	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
218815	chr8	59106271	59106900	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	12562	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
84001	chr16	29452551	29453250	+	0	NA	TTS (NM_001039182)	TTS (NM_001039182)	1305	NR_135304	552900		NM_001031827	ENSG00000183336	BOLA2	BOLA2A|BOLA2B|My016	bolA family member 2	protein-coding
150940	chr21	44289651	44289950	+	0	NA	exon (NM_000383, exon 6 of 14)	exon (NM_000383, exon 6 of 14)	3924	NM_000383	326		NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
26530	chr10	21501901	21502500	+	0	NA	Intergenic	Intergenic	-4940	NR_160800	399726		NM_001010911	ENSG00000204682	MIR1915HG	C10orf114|CASC10|bA418C1.3	MIR1915 host gene	ncRNA
110616	chr19	2197421	2197880	+	0	NA	intron (NM_032482, intron 7 of 27)	intron (NM_032482, intron 7 of 27)	33717	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
150696	chr21	43712501	43712700	+	0	NA	Intergenic	LTR35A|LTR|ERV1	-6529	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
16367	chr1	154345021	154346280	+	0	NA	intron (NM_001367934, intron 22 of 26)	L2b|LINE|L2	16852	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
231007	chr9	129510221	129510680	+	0	NA	intron (NR_038955, intron 4 of 4)	L1ME3A|LINE|L1	21790	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
109941	chr19	1331901	1332100	+	0	NA	Intergenic	Intergenic	-22959	NM_001369789	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
101009	chr17	64709951	64710050	+	0	NA	Intergenic	Intergenic	-47693	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
210110	chr7	97973371	97973830	+	0	NA	Intergenic	MER51E|LTR|ERV1	-1242	NR_002822	389538		NR_002822		CCZ1P-OR7E38P	-	CCZ1P-OR7E38P readthrough	pseudo
234687	chrX	20354451	20355080	+	0	NA	Intergenic	MIR|SINE|MIR	-87856	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
104689	chr17	81518861	81520750	+	0	NA	Intergenic	CpG	-7006	NR_037688	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
55101	chr12	98492351	98492650	+	0	NA	intron (NR_038383, intron 3 of 3)	AluSg|SINE|Alu	11355	NR_038383	643770		NR_038383	ENSG00000245017	LINC02453	-	long intergenic non-protein coding RNA 2453	ncRNA
51109	chr12	50058851	50059180	+	0	NA	exon (NM_020039, exon 2 of 12)	exon (NM_020039, exon 2 of 12)	1419	NR_046389	41		NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding
111513	chr19	3992601	3992800	+	0	NA	Intergenic	AluY|SINE|Alu	-7237	NM_001961	1938		NM_001961	ENSG00000167658	EEF2	EEF-2|EF-2|EF2|SCA26	eukaryotic translation elongation factor 2	protein-coding
151593	chr21	46667951	46668430	+	0	NA	Intergenic	CpG	32516	NM_001242866	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
138752	chr2	215323251	215323350	+	0	NA	intron (NM_004044, intron 4 of 15)	L1MB8|LINE|L1	11241	NM_004044	471		NM_004044	ENSG00000138363	ATIC	AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding
22246	chr1	212613921	212614450	+	0	NA	promoter-TSS (NM_001206486)	promoter-TSS (NM_001206486)	-833	NM_001206486	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
214061	chr7	143389371	143389980	+	0	NA	intron (NM_001362783, intron 7 of 8).2	intron (NM_001362783, intron 7 of 8).2	6989	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
104560	chr17	81341521	81342050	+	0	NA	Intergenic	CpG	-11111	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
122278	chr19	49069751	49070050	+	0	NA	3' UTR (NM_031886, exon 2 of 2)	3' UTR (NM_031886, exon 2 of 2)	3041	NM_031886	3743		NM_031886	ENSG00000104848	KCNA7	HAK6|KV1.7	potassium voltage-gated channel subfamily A member 7	protein-coding
80372	chr16	2528751	2529180	+	0	NA	intron (NM_001330449, intron 9 of 10)	intron (NM_001330449, intron 9 of 10)	2443	NM_001048212	752014		NM_001048212	ENSG00000205923	CEMP1	CP-23|CP23	cementum protein 1	protein-coding
118583	chr19	36305051	36305150	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-6243	NR_029389	100134317		NR_029389		LOC100134317	-	uncharacterized LOC100134317	ncRNA
169075	chr3	153595201	153595450	+	0	NA	intron (NR_146713, intron 4 of 6)	MER20|DNA|hAT-Charlie	110830	NR_160966	152118		NR_160966	ENSG00000237787	LINC02877	C3orf79	long intergenic non-protein coding RNA 2877	ncRNA
147642	chr20	62184321	62184880	+	0	NA	intron (NR_169202, intron 1 of 4)	intron (NR_169202, intron 1 of 4)	1572	NR_169200	26164		NM_015666	ENSG00000101181	MTG2	GTPBP5|ObgH1|dJ1005F21.2	mitochondrial ribosome associated GTPase 2	protein-coding
176325	chr4	87973451	87973880	+	0	NA	Intergenic	Intergenic	-1985	NM_000582	6696		NM_000582	ENSG00000118785	SPP1	BNSP|BSPI|ETA-1|OPN	secreted phosphoprotein 1	protein-coding
96627	chr17	40577571	40578130	+	0	NA	Intergenic	Intergenic	-12378	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
80901	chr16	3728621	3729350	+	0	NA	exon (NM_001079846, exon 30 of 30)	exon (NM_001079846, exon 30 of 30)	-11461	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
55808	chr12	108733001	108733580	+	0	NA	Intergenic	AluJb|SINE|Alu	-1772	NM_014325	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
197012	chr6	53319871	53320600	+	0	NA	intron (NM_001242830, intron 1 of 6)	AluSz6|SINE|Alu	17382	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
217235	chr8	26609271	26610030	+	0	NA	intron (NM_001244604, intron 3 of 13)	intron (NM_001244604, intron 3 of 13)	31245	NM_001244604	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
186298	chr5	134567571	134567950	+	0	NA	intron (NM_001289985, intron 9 of 11)	intron (NM_001289985, intron 9 of 11)	41652	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
173496	chr4	9367871	9368130	+	0	NA	non-coding (NR_027279, exon 1 of 1)	non-coding (NR_027279, exon 1 of 1)	126	NR_027279	391622		NM_212553	ENSG00000205946	USP17L6P	DUB4|USP17L6|vDUB4	ubiquitin specific peptidase 17 like family member 6, pseudogene	pseudo
115508	chr19	15420351	15420650	+	0	NA	3' UTR (NM_001330395, exon 8 of 8)	3' UTR (NM_001330395, exon 8 of 8)	-1512	NM_001291478	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
143823	chr20	32486871	32487030	+	0	NA	intron (NM_001256798, intron 4 of 10)	L1MC4|LINE|L1	-3460	NM_001351680	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
150668	chr21	43441571	43441730	+	0	NA	Intergenic	Intergenic	-4951	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
238031	chrX	135116371	135116730	+	0	NA	Intergenic	Intergenic	3976	NM_001355519	100129515		NM_001355519	ENSG00000224107	ETDB	ETDA|LINC00633	embryonic testis differentiation homolog B	protein-coding
13685	chr1	116664201	116664600	+	0	NA	intron (NM_001007237, intron 2 of 10)	intron (NM_001007237, intron 2 of 10)	3333	NM_001007237	3321		NM_001542	ENSG00000143061	IGSF3	EWI-3|LCDD|V8	immunoglobulin superfamily member 3	protein-coding
8124	chr1	39236901	39237100	+	0	NA	intron (NM_012090, intron 2 of 92)	intron (NM_012090, intron 2 of 92)	152833	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
144976	chr20	37270671	37270830	+	0	NA	Intergenic	Intergenic	-8936	NM_001184731	2691		NM_021081	ENSG00000118702	GHRH	GHRF|GRF|INN	growth hormone releasing hormone	protein-coding
136958	chr2	190403201	190403400	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-4276	NM_001375989	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
213551	chr7	139106221	139106590	+	0	NA	intron (NM_020119, intron 1 of 12)	AluSz|SINE|Alu	3315	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
110134	chr19	1601351	1602300	+	0	NA	intron (NM_006830, intron 1 of 2)	MLT1F2|LTR|ERVL-MaLR	3637	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
167933	chr3	136184021	136184380	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSc8|SINE|Alu	10268	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
103050	chr17	77154301	77154500	+	0	NA	intron (NM_001039573, intron 3 of 17)	AluJr|SINE|Alu	13431	NM_001143998	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
223504	chr8	144094221	144095700	+	0	NA	promoter-TSS (NM_001916)	promoter-TSS (NM_001916)	-116	NM_001916	1537		NM_001916	ENSG00000179091	CYC1	MC3DN6|UQCR4	cytochrome c1	protein-coding
238304	chrX	149495521	149496680	+	0	NA	intron (NR_104128, intron 6 of 8)	intron (NR_104128, intron 6 of 8)	9206	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
113262	chr19	8509721	8509980	+	0	NA	3' UTR (NM_001146175, exon 8 of 8)	3' UTR (NM_001146175, exon 8 of 8)	4317	NM_032370	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
12510	chr1	108197821	108198080	+	0	NA	intron (NM_013386, intron 1 of 9)	MSTB2|LTR|ERVL-MaLR	2393	NM_013386	29957		NM_013386	ENSG00000085491	SLC25A24	APC1|SCAMC-1|SCAMC1	solute carrier family 25 member 24	protein-coding
194148	chr6	32034721	32034980	+	0	NA	intron (NM_001242823, intron 39 of 40).6	intron (NM_001242823, intron 39 of 40).6	-3565	NM_001368144	1589		NM_000500	ENSG00000231852	CYP21A2	CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B	cytochrome P450 family 21 subfamily A member 2	protein-coding
24657	chr1	246933721	246934180	+	0	NA	Intergenic	Intergenic	-2002	NM_001323342	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
101303	chr17	66467121	66467580	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-50496	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
107495	chr18	47870751	47870850	+	0	NA	intron (NM_001003652, intron 2 of 10)	intron (NM_001003652, intron 2 of 10)	59859	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
96974	chr17	42255871	42256030	+	0	NA	intron (NM_012448, intron 1 of 18)	AluSx|SINE|Alu	20441	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
172151	chr4	1207751	1207850	+	0	NA	intron (NR_024569, intron 1 of 3)	intron (NR_024569, intron 1 of 3)	1162	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
206890	chr7	37690321	37690580	+	0	NA	intron (NM_001381946, intron 2 of 2)	MSTB|LTR|ERVL-MaLR	6684	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
62028	chr13	87674401	87674600	+	0	NA	intron (NM_001384610, intron 1 of 1)	CpG	1276	NM_001384610	26050		NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	SLIT and NTRK like family member 5	protein-coding
23309	chr1	228079971	228080680	+	0	NA	Intergenic	Intergenic	-2335	NM_001024226	375		NM_001658	ENSG00000143761	ARF1	PVNH8	ADP ribosylation factor 1	protein-coding
186266	chr5	134530871	134531350	+	0	NA	intron (NM_015288, intron 1 of 10)	L2b|LINE|L2	5002	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
148108	chr20	63408951	63409050	+	0	NA	intron (NM_172106, intron 14 of 15)	intron (NM_172106, intron 14 of 15)	-47651	NR_046317	1137		NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	cholinergic receptor nicotinic alpha 4 subunit	protein-coding
136608	chr2	178522721	178523880	+	0	NA	non-coding (NR_038271, exon 1 of 7)	non-coding (NR_038271, exon 1 of 7)	109	NR_038271	100506866		NR_038271	ENSG00000237298	TTN-AS1	-	TTN antisense RNA 1	ncRNA
173468	chr4	8686901	8687200	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	94285	NM_001014447	8532		NM_003652	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
181793	chr5	50922521	50922850	+	0	NA	Intergenic	Intergenic	47502	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
105318	chr17	82575951	82576250	+	0	NA	intron (NM_004514, intron 4 of 8)	CpG	56368	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
27327	chr10	30528571	30528770	+	0	NA	Intergenic	L2a|LINE|L2	94024	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
36204	chr11	3426571	3426930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-34835	NR_044999	10821		NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
156036	chr22	39965851	39966150	+	0	NA	exon (NM_001291826, exon 4 of 7)	exon (NM_001291826, exon 4 of 7)	19183	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
145183	chr20	38872571	38873830	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-53217	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
199844	chr6	127759221	127759880	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L2a|LINE|L2	95638	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
168882	chr3	152308601	152308800	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	9686	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
52217	chr12	54382101	54382300	+	0	NA	intron (NM_001290002, intron 3 of 8)	AluY|SINE|Alu	2533	NM_001290001	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
127132	chr2	37663801	37664400	+	0	NA	intron (NM_001371569, intron 1 of 1)	AluY|SINE|Alu	7542	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
183120	chr5	74764901	74765480	+	0	NA	intron (NM_001281302, intron 1 of 21)	intron (NM_001281302, intron 1 of 21)	1927	NM_170691	84340		NM_032380	ENSG00000164347	GFM2	EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2	GTP dependent ribosome recycling factor mitochondrial 2	protein-coding
58619	chr12	132494921	132495650	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	5134	NM_001382740	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
155635	chr22	38942871	38943230	+	0	NA	Intergenic	Intergenic	-14472	NM_001193289	100913187		NM_001193289		APOBEC3A_B	A3A|APOBEC3A	APOBEC3A and APOBEC3B deletion hybrid	protein-coding
222937	chr8	143022301	143022500	+	0	NA	TTS (NM_002346)	TTS (NM_002346)	3871	NM_002346	4061		NM_002346	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	lymphocyte antigen 6 family member E	protein-coding
181694	chr5	50592421	50592780	+	0	NA	Intergenic	L2c|LINE|L2	-73331	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
216622	chr8	22096601	22096800	+	0	NA	intron (NM_022749, intron 3 of 16)	intron (NM_022749, intron 3 of 16)	7546	NR_148727	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
29489	chr10	70584921	70585180	+	0	NA	Intergenic	Intergenic	17691	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
161812	chr3	45511171	45511830	+	0	NA	intron (NM_001368263, intron 14 of 20)	L1ME3A|LINE|L1	-1955	NR_048543	100885795		NR_048543		LARS2-AS1	-	LARS2 antisense RNA 1	ncRNA
66011	chr14	58257051	58257350	+	0	NA	intron (NR_038123, intron 2 of 9)	intron (NR_038123, intron 2 of 9)	12357	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
185880	chr5	132673871	132674250	+	0	NA	promoter-TSS (NM_001354990)	promoter-TSS (NM_001354990)	71	NM_000589	3565		NM_000589	ENSG00000113520	IL4	BCGF-1|BCGF1|BSF-1|BSF1|IL-4	interleukin 4	protein-coding
237798	chrX	129858851	129859350	+	0	NA	Intergenic	L1PA5|LINE|L1	-15214	NM_016032	51114		NM_016032	ENSG00000188706	ZDHHC9	CGI89|CXorf11|DHHC9|MMSA1|MRXSR|MRXSZ|ZDHHC10|ZNF379|ZNF380	zinc finger DHHC-type palmitoyltransferase 9	protein-coding
171449	chr3	196315621	196316300	+	0	NA	TTS (NR_037950)	TTS (NR_037950)	2280	NM_001351628	255758		NM_152773	ENSG00000213123	DYNLT2B	SRTD17|TCTEX1D2	dynein light chain Tctex-type 2B	protein-coding
60313	chr13	40652271	40652930	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	14041	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
37635	chr11	20584671	20584830	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-14858	NM_004211	9152		NM_004211	ENSG00000165970	SLC6A5	GLYT-2|GLYT2|HKPX3|NET1	solute carrier family 6 member 5	protein-coding
163365	chr3	50472701	50473930	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	30319	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
87547	chr16	71925021	71925730	+	0	NA	intron (NM_014761, intron 9 of 9)	AluSg|SINE|Alu	29844	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
155552	chr22	38720121	38720750	+	0	NA	intron (NM_004286, intron 4 of 11)	AluSq2|SINE|Alu	14491	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
37412	chr11	17275851	17277880	+	0	NA	promoter-TSS (NM_001352672)	promoter-TSS (NM_001352672)	-105	NM_001352671	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
130185	chr2	84276471	84276850	+	0	NA	Intergenic	L3|LINE|CR1	-14022	NR_003663	388965		NM_001013648		FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
28005	chr10	43160621	43161080	+	0	NA	intron (NM_001319656, intron 3 of 4)	intron (NM_001319656, intron 3 of 4)	5953	NM_001319656	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
4651	chr1	22140701	22141300	+	0	NA	intron (NM_030761, intron 1 of 4)	intron (NM_030761, intron 1 of 4)	2097	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
189769	chr5	176651621	176651950	+	0	NA	exon (NM_012171, exon 3 of 9)	exon (NM_012171, exon 3 of 9)	4301	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
128470	chr2	57377651	57377750	+	0	NA	Intergenic	(AGGGG)n|Simple_repeat|Simple_repeat	-529951	NM_001288838	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
24912	chr10	1058901	1059580	+	0	NA	intron (NM_014023, intron 1 of 13)	AluSx1|SINE|Alu	-2536	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
61044	chr13	48238321	48238580	+	0	NA	intron (NM_021999, intron 1 of 5)	intron (NM_021999, intron 1 of 5)	5244	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
90016	chr16	89891151	89891600	+	0	NA	intron (NM_014972, intron 5 of 17)	intron (NM_014972, intron 5 of 17)	17783	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
91718	chr17	6638601	6639080	+	0	NA	intron (NM_014804, intron 1 of 18)	intron (NM_014804, intron 1 of 18)	1871	NM_014804	9851		NM_014804	ENSG00000198920	KIAA0753	JBTS38|MNR|OFIP|SRTD21	KIAA0753	protein-coding
77222	chr15	81108471	81108730	+	0	NA	Intergenic	Intergenic	-25670	NM_001353365	161502		NM_173528	ENSG00000156206	CFAP161	C15orf26	cilia and flagella associated protein 161	protein-coding
224458	chr9	15505801	15506280	+	0	NA	intron (NM_001317898, intron 3 of 10)	intron (NM_001317898, intron 3 of 10)	4249	NM_021144	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
183674	chr5	80650051	80650150	+	0	NA	TTS (NM_001190470)	TTS (NM_001190470)	908	NM_001190470	100462981		NM_001190470		MTRNR2L2	HN2	MT-RNR2 like 2 (pseudogene)	pseudo
86802	chr16	67831051	67831430	+	0	NA	exon (NM_025082, exon 10 of 16)	exon (NM_025082, exon 10 of 16)	-11080	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
232598	chr9	136423871	136424030	+	0	NA	TTS (NM_001282946)	TTS (NM_001282946)	13292	NM_015160	23203		NM_015160	ENSG00000165688	PMPCA	Alpha-MPP|CLA1|CPD3|INPP5E|MAS2|P-55|SCAR2	peptidase, mitochondrial processing subunit alpha	protein-coding
51936	chr12	53735801	53736000	+	0	NA	Intergenic	Intergenic	-8448	NM_001143682	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
205794	chr7	23811671	23811830	+	0	NA	intron (NM_001260505, intron 22 of 22)	L1MDb|LINE|L1	101531	NM_031414	56164		NM_031414	ENSG00000196335	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
35969	chr11	2843821	2844480	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	17419	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
186683	chr5	138657571	138657730	+	0	NA	Intergenic	Intergenic	-82249	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
31961	chr10	100730901	100731600	+	0	NA	Intergenic	CpG	-4146	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
62156	chr13	97215101	97215780	+	0	NA	intron (NM_001382656, intron 1 of 6)	MER119|DNA|hAT-Charlie	-6893	NM_001382684	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
61552	chr13	60448871	60449100	+	0	NA	intron (NM_001146070, intron 3 of 13)	intron (NM_001146070, intron 3 of 13)	51765	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
183773	chr5	81805151	81805250	+	0	NA	Intergenic	L1MA5A|LINE|L1	-53947	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
212065	chr7	115004001	115004730	+	0	NA	intron (NM_199072, intron 4 of 4)	BC200|scRNA|scRNA	-74593	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
1836	chr1	6257421	6258000	+	0	NA	intron (NM_207370, intron 1 of 5)	intron (NM_207370, intron 1 of 5)	3388	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
27129	chr10	28241801	28242180	+	0	NA	intron (NM_001318170, intron 1 of 16)	intron (NM_001318170, intron 1 of 16)	40133	NM_173496	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
70580	chr14	102610671	102611230	+	0	NA	intron (NM_015156, intron 2 of 11)	intron (NM_015156, intron 2 of 11)	18301	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
143241	chr20	25037521	25038430	+	0	NA	intron (NM_001252675, intron 2 of 13)	intron (NM_001252675, intron 2 of 13)	-5269	NM_001252676	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
49322	chr12	21665651	21665750	+	0	NA	Intergenic	AluSx4|SINE|Alu	-7845	NM_001315537	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
20012	chr1	185296501	185296700	+	0	NA	3' UTR (NM_006469, exon 15 of 15)	3' UTR (NM_006469, exon 15 of 15)	20643	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
131810	chr2	98604821	98605300	+	0	NA	intron (NM_001008215, intron 1 of 2)	intron (NM_001008215, intron 1 of 2)	3452	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
184486	chr5	100843251	100843680	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-26900	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
210363	chr7	99587651	99587950	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-10467	NM_001195542	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
23107	chr1	226675941	226676500	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-1152	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
163607	chr3	51990351	51991530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	4955	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
94916	chr17	31902901	31903580	+	0	NA	Intergenic	Intergenic	-1532	NM_018428	55813		NM_018428	ENSG00000108651	UTP6	C17orf40|HCA66	UTP6 small subunit processome component	protein-coding
207383	chr7	44125201	44125750	+	0	NA	Intergenic	L1M4c|LINE|L1	-1905	NM_001127218	5425		NM_006230	ENSG00000106628	POLD2	-	DNA polymerase delta 2, accessory subunit	protein-coding
54569	chr12	92360271	92361330	+	0	NA	Intergenic	Intergenic	-60731	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
195543	chr6	37441671	37441930	+	0	NA	intron (NM_015050, intron 2 of 23)	intron (NM_015050, intron 2 of 23)	8579	NM_015050	23070		NM_015050	ENSG00000137200	CMTR1	FTSJD2|KIAA0082|MTr1|hMTr1	cap methyltransferase 1	protein-coding
186784	chr5	139349951	139350250	+	0	NA	intron (NM_001033112, intron 1 of 3)	AluSq|SINE|Alu	7666	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
176541	chr4	98264171	98265280	+	0	NA	intron (NM_001100427, intron 1 of 14)	intron (NM_001100427, intron 1 of 14)	3341	NM_001100428	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
84873	chr16	31175751	31176050	+	0	NA	Intergenic	AluSz|SINE|Alu	-4210	NM_001170634	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
54738	chr12	93749401	93749800	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	-11777	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
205693	chr7	23247671	23248130	+	0	NA	intron (NM_001005340, intron 1 of 10)	MIR|SINE|MIR	1125	NM_001005340	10457		NM_002510	ENSG00000136235	GPNMB	HGFIN|NMB|PLCA3	glycoprotein nmb	protein-coding
9862	chr1	54290801	54291280	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	54597	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
153240	chr22	23984101	23984830	+	0	NA	TTS (NR_126445).2	TTS (NR_126445).2	4331	NM_001080843	653689		NM_001080843	ENSG00000133433	GSTT2B	GSTT2P	glutathione S-transferase theta 2B	protein-coding
103444	chr17	78270301	78270700	+	0	NA	intron (NR_073178, intron 3 of 6)	intron (NR_073178, intron 3 of 6)	7992	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
190423	chr5	179830421	179830950	+	0	NA	intron (NM_003900, intron 5 of 7).2	AluSg7|SINE|Alu	9780	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
138880	chr2	217403151	217403250	+	0	NA	intron (NR_026597, intron 8 of 12)	intron (NR_026597, intron 8 of 12)	120467	NR_133642	105373877		NR_133642		DIRC3-AS1	-	DIRC3 antisense RNA 1	ncRNA
144588	chr20	35791851	35792400	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	20110	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
66640	chr14	63862151	63863180	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	9661	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
137314	chr2	195682021	195682280	+	0	NA	intron (NM_001127257, intron 2 of 9)	intron (NM_001127257, intron 2 of 9)	24924	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
163957	chr3	52907621	52907880	+	0	NA	intron (NM_016329, intron 17 of 20)	intron (NM_016329, intron 17 of 20)	-10202	NM_001198974	100526772		NM_001198974	ENSG00000248592	STIMATE-MUSTN1	TMEM110-MUSTN1	STIMATE-MUSTN1 readthrough	protein-coding
127964	chr2	46651971	46652330	+	0	NA	Intergenic	Intergenic	34935	NM_014171	9419		NM_014171	ENSG00000119878	CRIPT	HSPC139|RTS3|SSMDF	CXXC repeat containing interactor of PDZ3 domain	protein-coding
137087	chr2	190927471	190927830	+	0	NA	intron (NM_014905, intron 12 of 17)	intron (NM_014905, intron 12 of 17)	46829	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
77675	chr15	85597121	85597780	+	0	NA	intron (NM_007200, intron 8 of 36)	intron (NM_007200, intron 8 of 36)	-22500	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
195270	chr6	36485551	36485650	+	0	NA	intron (NM_173562, intron 7 of 7)	AluY|SINE|Alu	42600	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
207089	chr7	39980571	39980930	+	0	NA	intron (NM_003718, intron 1 of 13)	intron (NM_003718, intron 1 of 13)	30390	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
210069	chr7	96320451	96320750	+	0	NA	intron (NM_001160210, intron 1 of 17)	intron (NM_001160210, intron 1 of 17)	1498	NM_014251	10165		NM_014251	ENSG00000004864	SLC25A13	ARALAR2|CITRIN|CTLN2|NICCD	solute carrier family 25 member 13	protein-coding
108833	chr18	79068251	79070030	+	0	NA	promoter-TSS (NR_148360)	promoter-TSS (NR_148360)	-254	NM_001306085	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
125177	chr2	10075751	10076050	+	0	NA	intron (NM_001037160, intron 1 of 2)	intron (NM_001037160, intron 1 of 2)	4511	NM_001037160	192668		NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
156584	chr22	41526421	41527330	+	0	NA	3' UTR (NM_001018050, exon 6 of 6)	3' UTR (NM_001018050, exon 6 of 6)	17595	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
171476	chr3	196501451	196501700	+	0	NA	intron (NM_152617, intron 1 of 5)	L1MB5|LINE|L1	2193	NM_152617	165918		NM_152617	ENSG00000163961	RNF168	RIDL|hRNF168	ring finger protein 168	protein-coding
231834	chr9	132588471	132588980	+	0	NA	intron (NM_020064, intron 2 of 2)	intron (NM_020064, intron 2 of 2)	6119	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
174155	chr4	36252851	36253730	+	0	NA	intron (NR_122079, intron 3 of 4)	MER102a|DNA|hAT-Charlie	-3228	NR_122080	439933		NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
60235	chr13	40562871	40563800	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	-82329	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
83441	chr16	27312201	27312780	+	0	NA	Intergenic	AluSx|SINE|Alu	-1484	NM_001257406	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
33889	chr10	124463401	124463850	+	0	NA	intron (NM_001167880, intron 1 of 5)	AluSq|SINE|Alu	1802	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
43817	chr11	86671771	86672550	+	0	NA	promoter-TSS (NM_001014811)	promoter-TSS (NM_001014811)	38	NR_147831	10873		NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
44667	chr11	110443751	110443850	+	0	NA	intron (NM_004109, intron 2 of 3)	L1P4|LINE|L1	13852	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
77714	chr15	85694701	85694900	+	0	NA	intron (NM_007200, intron 17 of 36)	Charlie17a|DNA|hAT-Charlie	63925	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
73516	chr15	43787021	43787280	+	0	NA	intron (NM_001199877, intron 2 of 4)	AluY|SINE|Alu	-4826	NR_037672	10169		NM_005770	ENSG00000140264	SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
57184	chr12	121442551	121442650	+	0	NA	exon (NM_032590, exon 19 of 23)	exon (NM_032590, exon 19 of 23)	1752	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
11975	chr1	94384621	94385300	+	0	NA	Intergenic	Intergenic	-33417	NM_001122674	5825		NM_002858	ENSG00000117528	ABCD3	ABC43|CBAS5|PMP70|PXMP1|ZWS2	ATP binding cassette subfamily D member 3	protein-coding
51307	chr12	51267801	51268380	+	0	NA	intron (NM_001031628, intron 2 of 3)	intron (NM_001031628, intron 2 of 3)	2120	NM_001033873	57228		NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
117661	chr19	24031601	24032080	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1565	NM_001278661	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
237330	chrX	118501801	118502450	+	0	NA	intron (NM_144658, intron 1 of 52)	MER5B|DNA|hAT-Charlie	6216	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
30497	chr10	79291971	79292330	+	0	NA	intron (NM_020338, intron 10 of 24)	intron (NM_020338, intron 10 of 24)	-55319	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
100681	chr17	63776451	63776950	+	0	NA	intron (NM_007372, intron 2 of 18)	FLAM_C|SINE|Alu	2511	NM_007372	11325		NM_007372	ENSG00000198231	DDX42	DDX42P|RHELP|RNAHP|SF3B8|SF3b125	DEAD-box helicase 42	protein-coding
153573	chr22	26666851	26667150	+	0	NA	intron (NR_033319, intron 3 of 3)	intron (NR_033319, intron 3 of 3)	-5843	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
3091	chr1	12197201	12197500	+	0	NA	intron (NM_001066, intron 8 of 9)	MER63A|DNA|hAT-Blackjack	5637	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
191757	chr6	14025201	14025400	+	0	NA	Intergenic	Intergenic	-91956	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
25682	chr10	8438421	8439080	+	0	NA	Intergenic	Intergenic	155641	NR_134492	105376398		NR_134492		LOC105376398	-	uncharacterized LOC105376398	ncRNA
16169	chr1	153778421	153778850	+	0	NA	intron (NR_145826, intron 5 of 8).2	intron (NR_145826, intron 5 of 8).2	3228	NM_001317929	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
6926	chr1	31663721	31664700	+	0	NA	intron (NM_001856, intron 56 of 70)	intron (NM_001856, intron 56 of 70)	-19334	NM_012392	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
114103	chr19	11124771	11125130	+	0	NA	intron (NM_001195800, intron 13 of 15)	AluJb|SINE|Alu	11476	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
74453	chr15	59653951	59654250	+	0	NA	intron (NM_004492, intron 1 of 4)	L2a|LINE|L2	3205	NM_001320929	2958		NM_004492	ENSG00000140307	GTF2A2	HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS	general transcription factor IIA subunit 2	protein-coding
198909	chr6	109760351	109760450	+	0	NA	intron (NM_014845, intron 11 of 22)	intron (NM_014845, intron 11 of 22)	69104	NM_014845	9896		NM_014845	ENSG00000112367	FIG4	ALS11|BOP|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1	FIG4 phosphoinositide 5-phosphatase	protein-coding
107213	chr18	36133651	36134030	+	0	NA	intron (NR_137173, intron 2 of 20)	intron (NR_137173, intron 2 of 20)	3941	NM_001242879	55250		NM_018255	ENSG00000134759	ELP2	MRT58|SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
173004	chr4	4335001	4335600	+	0	NA	Intergenic	LTR13|LTR|ERVK	45049	NM_001330625	166793		NM_145291	ENSG00000168826	ZBTB49	ZNF509	zinc finger and BTB domain containing 49	protein-coding
93080	chr17	17609101	17609300	+	0	NA	Intergenic	Intergenic	-17492	NM_001267551	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
202187	chr6	156167271	156167830	+	0	NA	Intergenic	Intergenic	-211200	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
132189	chr2	101842251	101842750	+	0	NA	intron (NM_001384572, intron 9 of 29)	intron (NM_001384572, intron 9 of 29)	-140965	NR_103791	100506328		NR_103791		LINC01127	-	long intergenic non-protein coding RNA 1127	ncRNA
203429	chr7	345651	345950	+	0	NA	Intergenic	Intergenic	-33625	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
107982	chr18	58625321	58626180	+	0	NA	intron (NM_052947, intron 1 of 12)	intron (NM_052947, intron 1 of 12)	3341	NM_052947	115701		NM_052947	ENSG00000198796	ALPK2	HAK	alpha kinase 2	protein-coding
133427	chr2	119126671	119126830	+	0	NA	Intergenic	Intergenic	32001	NM_182528	165257		NM_182528	ENSG00000144119	C1QL2	C1QTNF10|CTRP10	complement C1q like 2	protein-coding
89998	chr16	89876451	89877250	+	0	NA	intron (NM_014972, intron 1 of 17)	AluYh3|SINE|Alu	3258	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
117805	chr19	29900171	29900800	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-23172	NM_001252641	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
110962	chr19	2944501	2945980	+	0	NA	promoter-TSS (NM_021217)	promoter-TSS (NM_021217)	-269	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
230711	chr9	128785471	128785830	+	0	NA	Intergenic	L1MD|LINE|L1	-1557	NM_001286772	54662		NM_018201	ENSG00000107021	TBC1D13	-	TBC1 domain family member 13	protein-coding
216400	chr8	17960521	17960980	+	0	NA	intron (NR_148032, intron 15 of 38)	AluY|SINE|Alu	37762	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
159680	chr3	15466651	15467930	+	0	NA	intron (NM_080538, intron 11 of 16)	MIRb|SINE|MIR	29018	NR_036232	100422868		NR_036232	ENSG00000263573	MIR4270	-	microRNA 4270	ncRNA
173331	chr4	7651501	7651700	+	0	NA	intron (NM_020777, intron 4 of 26)	LTR32|LTR|ERVL	-102490	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
168750	chr3	151199501	151200330	+	0	NA	intron (NM_013308, intron 2 of 2)	intron (NM_013308, intron 2 of 2)	3301	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
201535	chr6	149150571	149151330	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-66974	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
198659	chr6	107823921	107825150	+	0	NA	promoter-TSS (NM_198081)	promoter-TSS (NM_198081)	-222	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
232566	chr9	136364871	136365450	+	0	NA	exon (NM_052814, exon 11 of 13)	exon (NM_052814, exon 11 of 13)	-1416	NR_073565	728489		NM_001080849	ENSG00000213221	DNLZ	C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2	DNL-type zinc finger	protein-coding
149681	chr21	33915351	33916400	+	0	NA	promoter-TSS (NM_001697)	promoter-TSS (NM_001697)	-71	NM_001697	539		NM_001697	ENSG00000241837	ATP5PO	ATP5O|ATPO|HMC08D05|MC5DN7|OSCP	ATP synthase peripheral stalk subunit OSCP	protein-coding
237284	chrX	112642321	112642580	+	0	NA	intron (NM_178175, intron 3 of 3)	intron (NM_178175, intron 3 of 3)	37488	NM_178175	340596		NM_178175	ENSG00000182508	LHFPL1	-	LHFPL tetraspan subfamily member 1	protein-coding
177853	chr4	128063301	128063600	+	0	NA	intron (NM_178043, intron 1 of 10)	AluSx1|SINE|Alu	2138	NM_032239	55132		NM_018078	ENSG00000138709	LARP1B	LARP2	La ribonucleoprotein 1B	protein-coding
62398	chr13	99280321	99280600	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-22032	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
44378	chr11	102562421	102563050	+	0	NA	Intergenic	Intergenic	-31988	NM_002423	4316		NM_002423	ENSG00000137673	MMP7	MMP-7|MPSL1|PUMP-1	matrix metallopeptidase 7	protein-coding
3401	chr1	15742421	15742850	+	0	NA	exon (NM_001013641, exon 1 of 6)	exon (NM_001013641, exon 1 of 6)	136	NM_001013641	388595		NM_001013641	ENSG00000162460	TMEM82	-	transmembrane protein 82	protein-coding
43034	chr11	74014051	74014350	+	0	NA	intron (NM_001286577, intron 32 of 32)	intron (NM_001286577, intron 32 of 32)	-4963	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
144949	chr20	37073501	37074100	+	0	NA	intron (NM_183404, intron 2 of 20)	FLAM_A|SINE|Alu	22197	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
185752	chr5	132190121	132190450	+	0	NA	3' UTR (NM_001365681, exon 14 of 14)	3' UTR (NM_001365681, exon 14 of 14)	5409	NR_047470	100861518		NR_047470	ENSG00000237714	P4HA2-AS1	-	P4HA2 antisense RNA 1	ncRNA
4914	chr1	23867401	23869230	+	0	NA	promoter-TSS (NM_000147)	promoter-TSS (NM_000147)	-25	NM_000147	2517		NM_000147	ENSG00000179163	FUCA1	FUCA	alpha-L-fucosidase 1	protein-coding
27097	chr10	27496201	27496400	+	0	NA	Intergenic	LTR8|LTR|ERV1	-8004	NR_046172	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
63662	chr14	21026971	21027730	+	0	NA	intron (NM_001282211, intron 1 of 14)	intron (NM_001282211, intron 1 of 14)	-1040	NM_001354569	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
64812	chr14	34984801	34985200	+	0	NA	intron (NM_001146282, intron 1 of 14)	intron (NM_001146282, intron 1 of 14)	2008	NM_003136	6729		NM_003136	ENSG00000100883	SRP54	SCN8	signal recognition particle 54	protein-coding
17839	chr1	159912401	159913080	+	0	NA	Intergenic	Intergenic	10994	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
95686	chr17	38420501	38420800	+	0	NA	Intergenic	Intergenic	-7814	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
189835	chr5	177092071	177092530	+	0	NA	intron (NM_022963, intron 5 of 15)	intron (NM_022963, intron 5 of 15)	2750	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
159569	chr3	14925571	14925930	+	0	NA	intron (NM_001320276, intron 17 of 18)	intron (NM_001320276, intron 17 of 18)	21755	NR_046252	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
46743	chr11	129117651	129117900	+	0	NA	intron (NM_001378025, intron 4 of 21)	intron (NM_001378025, intron 4 of 21)	74550	NM_001142685	9743		NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
195576	chr6	37506921	37507180	+	0	NA	promoter-TSS (NR_126057)	promoter-TSS (NR_126057)	-298	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
106486	chr18	14449801	14450930	+	0	NA	Intergenic	CpG	48341	NR_024076	440224		NR_024076	ENSG00000293262	CXADRP3	-	CXADR pseudogene 3	pseudo
163065	chr3	49943601	49944030	+	0	NA	intron (NR_146071, intron 1 of 15)	L1MB4|LINE|L1	3665	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
122980	chr19	50799521	50799930	+	0	NA	promoter-TSS (NR_003068)	promoter-TSS (NR_003068)	-190	NR_003067	692202		NR_003067	ENSG00000221241	SNORD88A	HBII-180A	small nucleolar RNA, C/D box 88A	snoRNA
37605	chr11	19969771	19970230	+	0	NA	intron (NM_145117, intron 10 of 37)	MER44A|DNA|TcMar-Tigger	-52556	NM_001111019	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
41257	chr11	65831651	65831950	+	0	NA	Intergenic	Intergenic	-2163	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
208209	chr7	65140771	65141550	+	0	NA	non-coding (NR_146905, exon 1 of 13)	non-coding (NR_146905, exon 1 of 13)	130	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
53269	chr12	63779271	63780400	+	0	NA	promoter-TSS (NM_014254)	promoter-TSS (NM_014254)	-74	NM_014254	10329		NM_014254	ENSG00000118600	RXYLT1	HP10481|MDDGA10|TMEM5	ribitol xylosyltransferase 1	protein-coding
167751	chr3	132376651	132377030	+	0	NA	Intergenic	L1PA2|LINE|L1	-40662	NM_001329126	23317		NM_015268	ENSG00000138246	DNAJC13	PARK21|RME8	DnaJ heat shock protein family (Hsp40) member C13	protein-coding
138207	chr2	202689301	202689700	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	54531	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
234713	chrX	21373771	21375330	+	0	NA	5' UTR (NM_001330771, exon 1 of 19)	5' UTR (NM_001330771, exon 1 of 19)	132	NM_001330773	22866		NM_014927	ENSG00000149970	CNKSR2	CNK2|KSR2|MAGUIN|MRXSHG	connector enhancer of kinase suppressor of Ras 2	protein-coding
65712	chr14	52797601	52798030	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-6208	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
42520	chr11	70425801	70426000	+	0	NA	intron (NM_005231, intron 13 of 17)	intron (NM_005231, intron 13 of 17)	27371	NM_005231	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
183746	chr5	81300471	81300650	+	0	NA	intron (NR_034122, intron 1 of 3)	L2c|LINE|L2	1009	NR_034122	100131067		NR_034121	ENSG00000247572	CKMT2-AS1	-	CKMT2 antisense RNA 1	ncRNA
212607	chr7	129168271	129168430	+	0	NA	3' UTR (NM_178562, exon 8 of 8)	3' UTR (NM_178562, exon 8 of 8)	-20283	NM_005631	6608		NM_005631	ENSG00000128602	SMO	CRJS|FZD11|Gx|PHLS|SMOH	smoothened, frizzled class receptor	protein-coding
166141	chr3	111546321	111546930	+	0	NA	intron (NR_134917, intron 2 of 14)	intron (NR_134917, intron 2 of 14)	4428	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
117152	chr19	19322551	19322650	+	0	NA	intron (NM_015329, intron 1 of 18)	AluJb|SINE|Alu	1771	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
67826	chr14	73850301	73850700	+	0	NA	Intergenic	Intergenic	-1331	NM_001146154	145482		NM_152444	ENSG00000140043	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
9042	chr1	44792351	44792680	+	0	NA	Intergenic	MIR|SINE|MIR	-4345	NM_153274	266675		NM_153274	ENSG00000142959	BEST4	VMD2L2	bestrophin 4	protein-coding
104784	chr17	81718801	81719000	+	0	NA	intron (NM_012140, intron 9 of 10)	AluSx3|SINE|Alu	6616	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
116742	chr19	18471851	18471950	+	0	NA	intron (NM_006532, intron 2 of 11)	intron (NM_006532, intron 2 of 11)	-33767	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
59082	chr13	21017201	21017650	+	0	NA	intron (NM_014572, intron 2 of 7)	AluJr4|SINE|Alu	44161	NM_014572	26524		NM_014572	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
16966	chr1	155943951	155944250	+	0	NA	Intergenic	AluSx3|SINE|Alu	2462	NM_181885	339403		NM_181885	ENSG00000173080	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin family peptide/INSL5 receptor 4	protein-coding
95558	chr17	36927671	36929030	+	0	NA	intron (NR_135669, intron 2 of 3)	intron (NR_135669, intron 2 of 3)	8311	NR_135670	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
212957	chr7	130951501	130952530	+	0	NA	intron (NR_109853, intron 4 of 5)	intron (NR_109853, intron 4 of 5)	38551	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
81950	chr16	11844021	11844280	+	0	NA	intron (NM_015659, intron 5 of 8)	intron (NM_015659, intron 5 of 8)	7392	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
36234	chr11	3697221	3697480	+	0	NA	intron (NR_157590, intron 24 of 31)	intron (NR_157590, intron 24 of 31)	-25966	NM_001303034	57053		NM_020402	ENSG00000129749	CHRNA10	-	cholinergic receptor nicotinic alpha 10 subunit	protein-coding
155864	chr22	39479421	39479680	+	0	NA	intron (NM_002409, intron 1 of 1)	intron (NM_002409, intron 1 of 1)	-2728	NR_126469	104502417		NR_126469	ENSG00000227188	MGAT3-AS1	TapSAKI	MGAT3 antisense RNA 1	ncRNA
156336	chr22	40714371	40714730	+	0	NA	Intergenic	Intergenic	35066	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
926	chr1	1711951	1712900	+	0	NA	exon (NM_001313982, exon 6 of 20)	exon (NM_001313982, exon 6 of 20)	11932	NR_132739	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
105018	chr17	82042621	82043280	+	0	NA	Intergenic	Intergenic	5032	NR_159948	113523640		NR_159947	ENSG00000264569	DCXR-DT	-	DCXR divergent transcript	ncRNA
234614	chrX	19826371	19826530	+	0	NA	intron (NM_001353892, intron 2 of 17)	AluJb|SINE|Alu	6701	NM_001353894	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
205970	chr7	26167001	26168280	+	0	NA	intron (NM_004289, intron 1 of 3)	intron (NM_004289, intron 1 of 3)	15442	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
118589	chr19	36421521	36421780	+	0	NA	non-coding (NR_033748, exon 1 of 1)	non-coding (NR_033748, exon 1 of 1)	476	NR_033748	644189		NR_033748		LOC644189	-	acyl-CoA thioesterase 4 pseudogene	pseudo
229175	chr9	114587201	114588850	+	0	NA	intron (NM_004888, intron 1 of 2)	CpG	256	NM_004888	9550		NM_004888	ENSG00000136888	ATP6V1G1	ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10	ATPase H+ transporting V1 subunit G1	protein-coding
23339	chr1	228111321	228111580	+	0	NA	Intergenic	AluSg|SINE|Alu	-2138	NM_001321284	128308		NM_181441	ENSG00000162910	MRPL55	AAVG5835|L55nt|MRP-L55|PRO19675|bL31m	mitochondrial ribosomal protein L55	protein-coding
22859	chr1	225472951	225474000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-44620	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
160702	chr3	32393801	32394950	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	2522	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
8539	chr1	41023371	41023830	+	0	NA	intron (NR_037868, intron 1 of 3)	intron (NR_037868, intron 1 of 3)	-1845	NM_001168247	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
124762	chr2	7007951	7008250	+	0	NA	intron (NM_001349184, intron 3 of 8)	intron (NM_001349184, intron 3 of 8)	69780	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
101003	chr17	64658051	64658400	+	0	NA	intron (NM_022739, intron 1 of 18)	AluSq2|SINE|Alu	4082	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
232260	chr9	134410221	134410880	+	0	NA	intron (NM_001291921, intron 3 of 8)	intron (NM_001291921, intron 3 of 8)	3990	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
4755	chr1	23520021	23520330	+	0	NA	intron (NM_004091, intron 4 of 6)	AluSx1|SINE|Alu	-1755	NR_110799	101928163		NR_110799		LOC101928163	-	uncharacterized LOC101928163	ncRNA
223816	chr8	144828921	144829450	+	0	NA	5' UTR (NM_001349809, exon 2 of 4)	5' UTR (NM_001349809, exon 2 of 4)	1625	NM_001282795	7553		NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
104683	chr17	81508001	81510500	+	0	NA	TTS (NR_037688)	TTS (NR_037688)	3549	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
238004	chrX	134826071	134826430	+	0	NA	intron (NR_158606, intron 3 of 11)	intron (NR_158606, intron 3 of 11)	19013	NM_001170784	159091		NM_138819	ENSG00000156500	PABIR3	FAM122C	PABIR family member 3	protein-coding
103350	chr17	78105751	78106400	+	0	NA	3' UTR (NM_018996, exon 21 of 21)	3' UTR (NM_018996, exon 21 of 21)	22680	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
88753	chr16	86563471	86564630	+	0	NA	Intergenic	CpG	-2779	NM_005251	2303		NM_005251	ENSG00000176692	FOXC2	FKHL14|LD|MFH-1|MFH1	forkhead box C2	protein-coding
182108	chr5	56069001	56069400	+	0	NA	Intergenic	Intergenic	74033	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
238331	chrX	149534771	149535030	+	0	NA	intron (NR_027455, intron 5 of 9)	intron (NR_027455, intron 5 of 9)	4852	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
120154	chr19	42232351	42232650	+	0	NA	exon (NM_019884, exon 9 of 11)	exon (NM_019884, exon 9 of 11)	10102	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
223531	chr8	144117071	144117230	+	0	NA	3' UTR (NM_001316309, exon 24 of 24)	3' UTR (NM_001316309, exon 24 of 24)	9411	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
36452	chr11	5690801	5691330	+	0	NA	intron (NM_006074, intron 1 of 7)	intron (NM_006074, intron 1 of 7)	1275	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
118660	chr19	37369851	37369950	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-1199	NM_032453	84503		NM_032453	ENSG00000189164	ZNF527	-	zinc finger protein 527	protein-coding
110101	chr19	1545321	1545650	+	0	NA	Intergenic	AluSx1|SINE|Alu	21408	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
174802	chr4	48112171	48113000	+	0	NA	intron (NM_003328, intron 3 of 14)	intron (NM_003328, intron 3 of 14)	21665	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
218166	chr8	41956251	41957360	+	0	NA	intron (NM_001305878, intron 8 of 13)	intron (NM_001305878, intron 8 of 13)	-60064	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
151599	chr22	11618371	11618530	+	0	NA	Intergenic	Intergenic	-278956	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
111519	chr19	4009221	4009780	+	0	NA	intron (NM_015897, intron 1 of 10)	intron (NM_015897, intron 1 of 10)	1764	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
85773	chr16	56931401	56933650	+	0	NA	intron (NM_014685, intron 1 of 7)	intron (NM_014685, intron 1 of 7)	383	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
97922	chr17	45146351	45146450	+	0	NA	Intergenic	L2c|LINE|L2	-2075	NM_006460	10614		NM_006460	ENSG00000186834	HEXIM1	CLP1|EDG1|HIS1|MAQ1	HEXIM P-TEFb complex subunit 1	protein-coding
197312	chr6	72623001	72623680	+	0	NA	intron (NM_001160133, intron 1 of 14)	CpG	1276	NM_001160130	56479		NM_019842	ENSG00000185760	KCNQ5	Kv7.5|MRD46	potassium voltage-gated channel subfamily Q member 5	protein-coding
55838	chr12	109051271	109051680	+	0	NA	TTS (NR_038996)	TTS (NR_038996)	-1101	NM_032663	84749		NM_032663	ENSG00000135093	USP30	-	ubiquitin specific peptidase 30	protein-coding
80931	chr16	3817471	3817630	+	0	NA	intron (NM_004380, intron 2 of 30)	intron (NM_004380, intron 2 of 30)	62570	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
89359	chr16	88773321	88773650	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	11735	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
169840	chr3	177180001	177180580	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	16188	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
97893	chr17	45112201	45112700	+	0	NA	3' UTR (NM_133373, exon 15 of 15)	3' UTR (NM_133373, exon 15 of 15)	1983	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
176025	chr4	82351251	82352130	+	0	NA	TTS (NM_031370)	TTS (NM_031370)	22301	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
49840	chr12	32494721	32495050	+	0	NA	intron (NM_001304481, intron 1 of 16)	intron (NM_001304481, intron 1 of 16)	-7158	NM_139241	121512		NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
169375	chr3	160441721	160441980	+	0	NA	intron (NR_148403, intron 1 of 20)	intron (NR_148403, intron 1 of 20)	7936	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
134630	chr2	144420471	144420830	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-87581	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
181799	chr5	51305011	51305150	+	0	NA	Intergenic	L1PA3|LINE|L1	78252	NR_046243	642366		NR_046243		ISL1-DT	-	ISL1 divergent transcript	ncRNA
214361	chr7	149608401	149608800	+	0	NA	intron (NR_027788, intron 3 of 7)	intron (NR_027788, intron 3 of 7)	16190	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
65224	chr14	49830121	49830530	+	0	NA	intron (NM_001301732, intron 11 of 31)	intron (NM_001301732, intron 11 of 31)	22463	NM_004713	9147		NM_004713	ENSG00000165525	NEMF	IDDSAPN|NY-CO-1|RQC2|SDCCAG1	nuclear export mediator factor	protein-coding
234136	chrX	10011121	10013380	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-3004	NM_015691	55841		NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
145189	chr20	38881101	38881780	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-44977	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
18527	chr1	161918771	161919480	+	0	NA	intron (NM_007348, intron 15 of 15)	(TTTTATT)n|Simple_repeat|Simple_repeat	105340	NM_001347700	25903		NM_015441	ENSG00000162745	OLFML2B	-	olfactomedin like 2B	protein-coding
227255	chr9	89359021	89359480	+	0	NA	3' UTR (NM_001354697, exon 17 of 17)	3' UTR (NM_001354697, exon 17 of 17)	40399	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
44444	chr11	104858651	104859400	+	0	NA	Intergenic	L1MC1|LINE|L1	39645	NR_034065	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
143829	chr20	32504371	32504930	+	0	NA	intron (NM_001256798, intron 4 of 10)	AluSc|SINE|Alu	-5309	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
71362	chr14	105483321	105483880	+	0	NA	Intergenic	Intergenic	-3286	NM_001311	1396		NM_001311	ENSG00000213145	CRIP1	CRHP|CRIP|CRP-1|CRP1	cysteine rich protein 1	protein-coding
57745	chr12	122946851	122947750	+	0	NA	intron (NM_203444, intron 5 of 11)	intron (NM_203444, intron 5 of 11)	19163	NM_001243014	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
137881	chr2	200843351	200843750	+	0	NA	Intergenic	HSMAR1|DNA|TcMar-Mariner	21011	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
51139	chr12	50119301	50119900	+	0	NA	intron (NM_001257133, intron 2 of 2)	AluJo|SINE|Alu	7364	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
55131	chr12	98603021	98603800	+	0	NA	3' UTR (NM_002635, exon 8 of 8)	3' UTR (NM_002635, exon 8 of 8)	3775	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
218198	chr8	42005701	42006730	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-45535	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
167939	chr3	136190171	136190630	+	0	NA	intron (NM_018133, intron 1 of 1)	AluJr|SINE|Alu	4068	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
172916	chr4	3498651	3498750	+	0	NA	intron (NM_001301071, intron 8 of 9)	intron (NM_001301071, intron 8 of 9)	14156	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
62959	chr13	112284871	112285230	+	0	NA	Intergenic	Intergenic	-12050	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
35166	chr11	770051	770550	+	0	NA	non-coding (NR_134867, exon 7 of 7)	non-coding (NR_134867, exon 7 of 7)	7187	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
26500	chr10	18582921	18583180	+	0	NA	intron (NM_001351118, intron 6 of 8)	LTR7C|LTR|ERV1	68537	NM_182543	221078		NM_182543	ENSG00000241058	NSUN6	4933414E04Rik|ARL5B-AS1|MRT82|NOPD1	NOP2/Sun RNA methyltransferase 6	protein-coding
101309	chr17	66507651	66507950	+	0	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-90946	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
231307	chr9	130055401	130055600	+	0	NA	intron (NM_001136557, intron 1 of 19)	AluYa5|SINE|Alu	1594	NM_001136557	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
194421	chr6	33080271	33081030	+	0	NA	promoter-TSS (NM_001242524).2	promoter-TSS (NM_001242524).2	98	NM_001242524	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
74216	chr15	56241601	56242080	+	0	NA	intron (NM_001370561, intron 4 of 11)	intron (NM_001370561, intron 4 of 11)	2039	NM_022841	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
179478	chr4	184513951	184514730	+	0	NA	intron (NR_147158, intron 1 of 2)	intron (NR_147158, intron 1 of 2)	23243	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
58220	chr12	127568671	127568830	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	67717	NR_120451	101927637		NR_120451	ENSG00000256022	LINC02411	-	long intergenic non-protein coding RNA 2411	ncRNA
131231	chr2	95389051	95389400	+	0	NA	Intergenic	CpG	-13483	NM_016044	51011		NM_016044	ENSG00000115042	FAHD2A	CGI-105	fumarylacetoacetate hydrolase domain containing 2A	protein-coding
188697	chr5	157300751	157301050	+	0	NA	intron (NM_014376, intron 6 of 30)	intron (NM_014376, intron 6 of 30)	31576	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
11884	chr1	93157971	93158130	+	0	NA	intron (NM_001167830, intron 2 of 4)	AluY|SINE|Alu	22363	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
226341	chr9	69477551	69477650	+	0	NA	intron (NM_001163, intron 2 of 12)	L1PA2|LINE|L1	148275	NM_004816	9413		NM_004816	ENSG00000135063	ENTREP1	C9orf61|ENTREP|FAM189A2|X123	endosomal transmembrane epsin interactor 1	protein-coding
50843	chr12	49122271	49122980	+	0	NA	Intergenic	AluY|SINE|Alu	8770	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
84031	chr16	29503371	29503750	+	0	NA	intron (NM_001355401, intron 2 of 7)	MLT1I|LTR|ERVL-MaLR	2314	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
127471	chr2	42223401	42223600	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-53269	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
118948	chr19	38833701	38834330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2221	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
90760	chr17	2053271	2054400	+	0	NA	Intergenic	CpG	-1268	NM_006497	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
27926	chr10	41909371	41909950	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	458385	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
98578	chr17	47722901	47723100	+	0	NA	Intergenic	AluSz|SINE|Alu	-10236	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
171443	chr3	196286001	196286250	+	0	NA	intron (NM_005017, intron 1 of 9)	AluSx|SINE|Alu	1601	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
34426	chr10	132410251	132411280	+	0	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	13565	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
94119	chr17	28071671	28072230	+	0	NA	intron (NM_016231, intron 1 of 10)	L1MCc|LINE|L1	29273	NM_016231	51701		NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding
175626	chr4	76197921	76198180	+	0	NA	intron (NM_001204255, intron 1 of 8)	intron (NM_001204255, intron 1 of 8)	15774	NM_001204255	950		NM_005506	ENSG00000138760	SCARB2	AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII	scavenger receptor class B member 2	protein-coding
76754	chr15	76818871	76819630	+	0	NA	intron (NR_148227, intron 5 of 32)	L1PA4|LINE|L1	42694	NM_001145923	49855		NM_020843	ENSG00000140386	SCAPER	IDDRP|MSTP063|ZNF291|Zfp291	S-phase cyclin A associated protein in the ER	protein-coding
32299	chr10	102143021	102143480	+	0	NA	intron (NM_015062, intron 6 of 13)	intron (NM_015062, intron 6 of 13)	-8926	NM_001284388	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
90795	chr17	2181701	2181900	+	0	NA	intron (NM_001256827, intron 5 of 11)	intron (NM_001256827, intron 5 of 11)	-50878	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
119272	chr19	39532021	39533280	+	0	NA	exon (NM_152361, exon 1 of 1)	exon (NM_152361, exon 1 of 1)	202	NM_152361	126272		NM_152361	ENSG00000176401	EID2B	EID-2B|EID-3	EP300 interacting inhibitor of differentiation 2B	protein-coding
42671	chr11	72587251	72587580	+	0	NA	intron (NM_001243784, intron 13 of 30)	intron (NM_001243784, intron 13 of 30)	16759	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
64691	chr14	32576101	32576350	+	0	NA	intron (NM_004274, intron 4 of 13)	intron (NM_004274, intron 4 of 13)	246927	NM_004274	9472		NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding
153546	chr22	26591501	26591700	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1468	NM_001362922	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
38697	chr11	46614901	46615100	+	0	NA	intron (NM_173811, intron 2 of 2)	AluSp|SINE|Alu	2227	NM_173811	283254		NM_173811	ENSG00000180423	HARBI1	C11orf77	harbinger transposase derived 1	protein-coding
164555	chr3	63977651	63978450	+	0	NA	intron (NM_001128149, intron 1 of 8)	intron (NM_001128149, intron 1 of 8)	10256	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
21267	chr1	204394471	204394700	+	0	NA	Intergenic	Intergenic	17232	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
17809	chr1	159826021	159826990	+	0	NA	promoter-TSS (NM_001330741)	promoter-TSS (NM_001330741)	-368	NM_001330741	56833		NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
8502	chr1	40858671	40859150	+	0	NA	Intergenic	Intergenic	3453	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
102130	chr17	75065321	75065780	+	0	NA	non-coding (NR_110835, exon 8 of 8)	non-coding (NR_110835, exon 8 of 8)	18325	NM_015353	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
13827	chr1	117626221	117627080	+	0	NA	3' UTR (NM_017709, exon 2 of 2)	3' UTR (NM_017709, exon 2 of 2)	20602	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
186689	chr5	138662471	138663330	+	0	NA	Intergenic	Intergenic	-87499	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
226847	chr9	77984071	77984230	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	47661	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
5546	chr1	25862851	25863030	+	0	NA	exon (NM_178422, exon 3 of 3)	exon (NM_178422, exon 3 of 3)	-3482	NM_001287490	79000		NM_024037	ENSG00000127423	AUNIP	AIBP|C1orf135	aurora kinase A and ninein interacting protein	protein-coding
43004	chr11	73975271	73975880	+	0	NA	exon (NM_001381943, exon 8 of 9)	exon (NM_001381943, exon 8 of 9)	7268	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
202636	chr6	158755901	158757230	+	0	NA	intron (NM_001318745, intron 10 of 14)	AluSx1|SINE|Alu	8188	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
238468	chrX	153293501	153293730	+	0	NA	Intergenic	L1MB5|LINE|L1	28152	NM_001354980	105373377		NM_001354980	ENSG00000225110	PNMA6F	PNMA6BL	PNMA family member 6F	protein-coding
39245	chr11	57697971	57698400	+	0	NA	intron (NM_015457, intron 10 of 11)	intron (NM_015457, intron 10 of 11)	14030	NR_157587	219541		NM_153450	ENSG00000156603	MED19	DT2P1G7|LCMR1|MED19AS	mediator complex subunit 19	protein-coding
231665	chr9	131670091	131670650	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-18967	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
104298	chr17	80875721	80876050	+	0	NA	intron (NM_001163034, intron 13 of 29)	CpG	-70253	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
173031	chr4	4854401	4854600	+	0	NA	Intergenic	MIRb|SINE|MIR	-5165	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
172662	chr4	2705751	2705850	+	0	NA	intron (NM_001256668, intron 17 of 19)	AluJo|SINE|Alu	50536	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
164632	chr3	66433371	66433530	+	0	NA	intron (NM_001377344, intron 2 of 17)	intron (NM_001377344, intron 2 of 17)	-27292	NM_001377347	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
94317	chr17	28757701	28758100	+	0	NA	3' UTR (NM_001288634, exon 3 of 3)	3' UTR (NM_001288634, exon 3 of 3)	13889	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
68212	chr14	76913021	76914000	+	0	NA	Intergenic	Intergenic	-46128	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
79593	chr16	1044151	1045630	+	0	NA	Intergenic	Intergenic	-27866	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
34648	chr10	133326871	133327630	+	0	NA	intron (NM_015722, intron 3 of 5)	intron (NM_015722, intron 3 of 5)	9646	NM_015722	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
186560	chr5	138469301	138470750	+	0	NA	TTS (NM_001964)	TTS (NM_001964)	4546	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
189763	chr5	176642901	176643100	+	0	NA	intron (NM_001375362, intron 3 of 8)	intron (NM_001375362, intron 3 of 8)	-4484	NM_130465	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
173304	chr4	7183251	7183350	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-9238	NM_020777	57537		NM_020777	ENSG00000184985	SORCS2	-	sortilin related VPS10 domain containing receptor 2	protein-coding
76274	chr15	74095701	74096230	+	0	NA	Intergenic	Intergenic	4241	NR_160652	732265		NR_160652		COMMD4P2	-	COMM domain containing 4 pseudogene 2	pseudo
139842	chr2	230441021	230442050	+	0	NA	intron (NM_001206704, intron 3 of 15)	L1ME2|LINE|L1	24779	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
214867	chr7	151381201	151384030	+	0	NA	intron (NM_001284261, intron 3 of 4)	MER5A|DNA|hAT-Charlie	-26546	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
205699	chr7	23287851	23288150	+	0	NA	Intergenic	Intergenic	-11339	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
135697	chr2	168891751	168892130	+	0	NA	Intergenic	Intergenic	-1510	NM_020675	57405		NM_020675	ENSG00000152253	SPC25	AD024|SPBC25|hSpc25	SPC25 component of NDC80 kinetochore complex	protein-coding
108765	chr18	77129971	77130700	+	0	NA	intron (NM_001025100, intron 1 of 3)	MIR|SINE|MIR	2448	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
190429	chr5	179834771	179835750	+	0	NA	intron (NM_003900, intron 7 of 7).2	SVA_D|Retroposon|SVA	14355	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
237030	chrX	102767601	102767800	+	0	NA	intron (NR_146584, intron 8 of 18)	intron (NR_146584, intron 8 of 18)	-1453	NR_038988	100287765		NR_038988		LINC00630	-	long intergenic non-protein coding RNA 630	ncRNA
157108	chr22	42638871	42639030	+	0	NA	TTS (NM_001165877)	TTS (NM_001165877)	1651	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
85253	chr16	48455951	48456050	+	0	NA	Intergenic	Intergenic	-70587	NM_003031	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
51337	chr12	51382201	51382600	+	0	NA	intron (NM_007210, intron 2 of 11)	L2b|LINE|L2	-8917	NM_001267615	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
93878	chr17	21085651	21085950	+	0	NA	intron (NR_110895, intron 2 of 2)	LTR12D|LTR|ERV1	10244	NR_110895	101060544		NR_110895	ENSG00000236819	LINC01563	HP08942	long intergenic non-protein coding RNA 1563	ncRNA
42869	chr11	73307351	73309700	+	0	NA	non-coding (NR_147696, exon 2 of 3)	non-coding (NR_147696, exon 2 of 3)	249	NM_014786	9828		NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor 17	protein-coding
183779	chr5	81850971	81852650	+	0	NA	Intergenic	Intergenic	-100557	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
189664	chr5	176366671	176367150	+	0	NA	intron (NM_173664, intron 2 of 3)	intron (NM_173664, intron 2 of 3)	-1036	NR_031569	100302203		NR_031569	ENSG00000221464	MIR1271	MIRN1271|hsa-mir-1271	microRNA 1271	ncRNA
186717	chr5	139193851	139194780	+	0	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	4053	NM_001037633	64374		NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
2756	chr1	10685951	10686650	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	110346	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
231801	chr9	132377671	132377830	+	0	NA	intron (NM_007344, intron 10 of 10)	intron (NM_007344, intron 10 of 10)	-22764	NM_015046	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
93171	chr17	17792321	17793780	+	0	NA	exon (NM_030665, exon 3 of 6)	exon (NM_030665, exon 3 of 6)	-13521	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
60205	chr13	40445501	40445700	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	35406	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
89157	chr16	88529651	88530330	+	0	NA	intron (NM_153813, intron 6 of 9)	intron (NM_153813, intron 6 of 9)	1063	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
195549	chr6	37479271	37479730	+	0	NA	intron (NM_015050, intron 23 of 23)	intron (NM_015050, intron 23 of 23)	20393	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
207389	chr7	44147651	44147950	+	0	NA	exon (NM_001354800, exon 7 of 11)	exon (NM_001354800, exon 7 of 11)	-1167	NM_001354801	2645		NM_000162	ENSG00000106633	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2|PNDM1	glucokinase	protein-coding
5412	chr1	25540771	25541130	+	0	NA	Intergenic	MIR3|SINE|MIR	-2656	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
137387	chr2	196210851	196212150	+	0	NA	intron (NM_001348768, intron 28 of 28)	intron (NM_001348768, intron 28 of 28)	-39922	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
12973	chr1	110893871	110894530	+	0	NA	intron (NM_001040033, intron 4 of 8)	intron (NM_001040033, intron 4 of 8)	21052	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
210369	chr7	99594721	99595550	+	0	NA	Intergenic	Intergenic	-3132	NM_001195542	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
116597	chr19	18265521	18266430	+	0	NA	exon (NM_025249, exon 3 of 4)	exon (NM_025249, exon 3 of 4)	8477	NM_001145304	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
156517	chr22	41380801	41383030	+	0	NA	promoter-TSS (NM_003216)	promoter-TSS (NM_003216)	-27	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
137014	chr2	190670501	190671700	+	0	NA	intron (NM_005966, intron 5 of 9)	intron (NM_005966, intron 5 of 9)	11942	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
185207	chr5	119438801	119439600	+	0	NA	Intergenic	L1PA6|LINE|L1	-13297	NM_001199291	3295		NM_000414	ENSG00000133835	HSD17B4	DBP|MFE-2|MFP-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid 17-beta dehydrogenase 4	protein-coding
153579	chr22	26672301	26674050	+	0	NA	non-coding (NR_003491, exon 5 of 5)	non-coding (NR_003491, exon 5 of 5)	332	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
50419	chr12	47392951	47393480	+	0	NA	Intergenic	Intergenic	-21793	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
1652	chr1	3854851	3855350	+	0	NA	intron (NM_014704, intron 1 of 21)	AluSx|SINE|Alu	2111	NM_014704	9731		NM_014704	ENSG00000116198	CEP104	CFAP256|GlyBP|JBTS25|KIAA0562|MRT77|ROC22	centrosomal protein 104	protein-coding
87162	chr16	69323371	69323530	+	0	NA	intron (NM_013245, intron 10 of 10)	AluJb|SINE|Alu	7138	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
54708	chr12	93440351	93442900	+	0	NA	intron (NM_003348, intron 1 of 3)	CpG	322	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
192425	chr6	24881001	24882050	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-4160	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
198754	chr6	108579801	108580200	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	19083	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
67051	chr14	67680101	67680780	+	0	NA	intron (NM_016026, intron 6 of 6)	intron (NM_016026, intron 6 of 6)	-5808	NM_006370	10490		NM_006370	ENSG00000100568	VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
88086	chr16	81502921	81503180	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	7696	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
158642	chr3	4989971	4990330	+	0	NA	Intergenic	L1MB5|LINE|L1	-10189	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
114109	chr19	11132671	11132830	+	0	NA	3' UTR (NM_001195798, exon 18 of 18)	3' UTR (NM_001195798, exon 18 of 18)	19276	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
238837	chrX	154463301	154463500	+	0	NA	exon (NM_017514, exon 5 of 33)	exon (NM_017514, exon 5 of 33)	5119	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
68724	chr14	90815951	90816930	+	0	NA	promoter-TSS (NM_001320421)	promoter-TSS (NM_001320421)	-10	NM_001010854	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
108839	chr18	79138871	79139600	+	0	NA	intron (NM_198531, intron 5 of 29)	intron (NM_198531, intron 5 of 29)	69841	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
23137	chr1	226707801	226708000	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	31275	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
210063	chr7	95837451	95837550	+	0	NA	intron (NM_004411, intron 5 of 16)	L1PA3|LINE|L1	64994	NM_004411	1780		NM_004411	ENSG00000158560	DYNC1I1	DNCI1|DNCIC1	dynein cytoplasmic 1 intermediate chain 1	protein-coding
207083	chr7	39969221	39969480	+	0	NA	intron (NM_003718, intron 1 of 13)	intron (NM_003718, intron 1 of 13)	18990	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
201161	chr6	142937021	142937280	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	8026	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
72942	chr15	40445571	40445730	+	0	NA	intron (NR_125372, intron 1 of 4)	intron (NR_125372, intron 1 of 4)	4697	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
88273	chr16	83137221	83137700	+	0	NA	intron (NM_001220490, intron 3 of 12)	intron (NM_001220490, intron 3 of 12)	-147162	NR_110937	101928417		NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
212365	chr7	127708621	127709050	+	0	NA	intron (NM_014390, intron 9 of 23)	intron (NM_014390, intron 9 of 23)	56641	NM_014390	27044		NM_014390	ENSG00000197157	SND1	TDRD11|TSN|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
47194	chr12	811621	811880	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	58827	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
177859	chr4	128283721	128283980	+	0	NA	intron (NM_006320, intron 1 of 2)	AluSx1|SINE|Alu	3963	NM_006320	10424		NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
165274	chr3	75609751	75610050	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-20863	NR_031714	100302212		NR_031714	ENSG00000283894	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
198653	chr6	107816851	107816950	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	7413	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
54342	chr12	89677071	89677430	+	0	NA	intron (NM_001366524, intron 1 of 21)	intron (NM_001366524, intron 1 of 21)	31588	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
431	chr1	1098871	1100180	+	0	NA	intron (NM_017891, intron 1 of 9)	L1ME2|LINE|L1	16564	NM_017891	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
144943	chr20	37043051	37044550	+	0	NA	intron (NM_183404, intron 13 of 20)	L1MB8|LINE|L1	52197	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
202114	chr6	154768351	154768650	+	0	NA	intron (NM_001286189, intron 3 of 21)	Tigger2|DNA|TcMar-Tigger	35084	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
41777	chr11	66844751	66844950	+	0	NA	intron (NM_001032279, intron 4 of 7)	intron (NM_001032279, intron 4 of 7)	1409	NM_001032279	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
238496	chrX	153598551	153600000	+	0	NA	promoter-TSS (NM_001130997)	promoter-TSS (NM_001130997)	-65	NR_131982	105373383		NR_131982	ENSG00000293160	LOC105373383	-	uncharacterized LOC105373383	ncRNA
19312	chr1	173206801	173207350	+	0	NA	exon (NM_003326, exon 1 of 3)	exon (NM_003326, exon 1 of 3)	256	NM_003326	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
162551	chr3	48646471	48646630	+	0	NA	intron (NM_001407, intron 21 of 34)	intron (NM_001407, intron 21 of 34)	-2270	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
51906	chr12	53625821	53627280	+	0	NA	promoter-TSS (NM_001366563)	promoter-TSS (NM_001366563)	-135	NM_001206682	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
191202	chr6	5471001	5471280	+	0	NA	intron (NM_001374875, intron 4 of 6)	intron (NM_001374875, intron 4 of 6)	-13065	NR_125848	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
226525	chr9	71901651	71902250	+	0	NA	intron (NM_016014, intron 1 of 4)	L2c|LINE|L2	9243	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
146490	chr20	49881171	49881330	+	0	NA	intron (NR_048540, intron 9 of 11)	MIRc|SINE|MIR	17391	NR_162136	113219455		NR_162136		MIR12122	-	microRNA 12122	ncRNA
159563	chr3	14885001	14885980	+	0	NA	intron (NM_152536, intron 4 of 19)	LTR3A|LTR|ERVK	62015	NR_046252	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
156760	chr22	41842871	41843400	+	0	NA	intron (NR_103834, intron 1 of 21)	intron (NR_103834, intron 1 of 21)	-8470	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
86832	chr16	67891771	67892130	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1304	NM_006742	5681		NM_006742	ENSG00000159792	PSKH1	-	protein serine kinase H1	protein-coding
130700	chr2	86611051	86611230	+	0	NA	intron (NM_005667, intron 3 of 3)	AluJr|SINE|Alu	12725	NM_005667	7844		NM_005667	ENSG00000239305	RNF103	HKF-1|KF-1|KF1|ZFP-103|ZFP103	ring finger protein 103	protein-coding
146761	chr20	50849071	50849650	+	0	NA	intron (NM_198799, intron 4 of 4)	intron (NM_198799, intron 4 of 4)	54299	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
107219	chr18	36187431	36188350	+	0	NA	promoter-TSS (NR_134605)	promoter-TSS (NR_134605)	393	NM_017947	55034		NM_017947	ENSG00000075643	MOCOS	HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding
156491	chr22	41280901	41281550	+	0	NA	intron (NM_001317930, intron 1 of 15)	intron (NM_001317930, intron 1 of 15)	4962	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
237217	chrX	109536631	109537650	+	0	NA	promoter-TSS (NM_001242618)	promoter-TSS (NM_001242618)	-65	NM_001242618	55916		NM_018698	ENSG00000101888	NXT2	P15-2	nuclear transport factor 2 like export factor 2	protein-coding
198903	chr6	109690001	109692380	+	0	NA	promoter-TSS (NM_014845)	promoter-TSS (NM_014845)	22	NR_138057	221264		NM_145025	ENSG00000155085	AK9	AK 9|AKD1|AKD2|C6orf199|C6orf224|SPGF89|dJ70A9.1	adenylate kinase 9	protein-coding
116411	chr19	17999471	17999630	+	0	NA	TTS (NM_002248)	TTS (NM_002248)	-1574	NM_001025604	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
19588	chr1	179317451	179318250	+	0	NA	intron (NM_001252511, intron 2 of 14)	intron (NM_001252511, intron 2 of 14)	24053	NM_003101	6646		NM_003101	ENSG00000057252	SOAT1	ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT	sterol O-acyltransferase 1	protein-coding
104266	chr17	80780451	80781700	+	0	NA	intron (NM_020761, intron 6 of 33)	MIRb|SINE|MIR	24557	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
195988	chr6	41979571	41980530	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-38202	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
132183	chr2	101821471	101822050	+	0	NA	intron (NM_001384572, intron 2 of 29)	Tigger3b|DNA|TcMar-Tigger	123495	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
3669	chr1	16474971	16475150	+	0	NA	intron (NR_023386, intron 14 of 14)	intron (NR_023386, intron 14 of 14)	13253	NR_147211	107984921		NR_147210	ENSG00000226029	LINC01772	-	long intergenic non-protein coding RNA 1772	ncRNA
203423	chr7	321851	322880	+	0	NA	Intergenic	(CCCCGC)n|Simple_repeat|Simple_repeat	31136	NR_164665	100288524		NM_001195127	ENSG00000248767	FOXL3-OT1	FOXL3|WI2-2373I1.2	FOXL3 overlapping transcript 1	ncRNA
55720	chr12	108298271	108299030	+	0	NA	intron (NM_001142344, intron 1 of 2)	intron (NM_001142344, intron 1 of 2)	22012	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
28035	chr10	43232971	43233130	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	-3311	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
214438	chr7	149949371	149949530	+	0	NA	intron (NM_001351028, intron 6 of 9)	intron (NM_001351028, intron 6 of 9)	75481	NM_001367794	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
96885	chr17	42107371	42109330	+	0	NA	intron (NM_024119, intron 6 of 13)	LTR18B|LTR|ERVL	4364	NM_024119	79132		NM_024119	ENSG00000108771	DHX58	D11LGP2|D11lgp2e|LGP2|RLR-3	DExH-box helicase 58	protein-coding
103307	chr17	77882301	77883430	+	0	NA	non-coding (NR_028337, exon 2 of 2)	non-coding (NR_028337, exon 2 of 2)	1222	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
205677	chr7	23035851	23036180	+	0	NA	Intergenic	L1PA2|LINE|L1	-21885	NM_001363467	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
135679	chr2	168612101	168612300	+	0	NA	intron (NM_203463, intron 3 of 9)	MIR|SINE|MIR	29257	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
228509	chr9	100350051	100350380	+	0	NA	intron (NM_017746, intron 1 of 14)	intron (NM_017746, intron 1 of 14)	2356	NM_001161584	54881		NM_017746	ENSG00000136891	TEX10	Ipi1|bA208F1.2	testis expressed 10	protein-coding
233309	chr9	137410371	137410530	+	0	NA	intron (NM_017820, intron 1 of 21)	AluSx1|SINE|Alu	12712	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
83164	chr16	23465521	23465780	+	0	NA	3' UTR (NM_015044, exon 17 of 17)	3' UTR (NM_015044, exon 17 of 17)	-12461	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
40550	chr11	64320571	64320800	+	0	NA	exon (NM_012094, exon 3 of 6)	exon (NM_012094, exon 3 of 6)	-2089	NM_001372071	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
125342	chr2	10831971	10833630	+	0	NA	promoter-TSS (NM_001282704)	promoter-TSS (NM_001282704)	-315	NM_001282704	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
141827	chr20	381601	383250	+	0	NA	intron (NM_001301196, intron 1 of 3)	intron (NM_001301196, intron 1 of 3)	1082	NM_001301190	57761		NM_021158	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
55637	chr12	107093101	107094950	+	0	NA	promoter-TSS (NM_004075)	promoter-TSS (NM_004075)	-476	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
190204	chr5	178218051	178218150	+	0	NA	intron (NM_153373, intron 8 of 12)	AluY|SINE|Alu	13567	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
9245	chr1	46166201	46167680	+	0	NA	intron (NM_001303427, intron 1 of 9)	intron (NM_001303427, intron 1 of 9)	7961	NM_001328648	8503		NM_003629	ENSG00000117461	PIK3R3	p55|p55-GAMMA|p55PIK	phosphoinositide-3-kinase regulatory subunit 3	protein-coding
220181	chr8	95211901	95212380	+	0	NA	intron (NR_046232, intron 1 of 2)	L2c|LINE|L2	4234	NR_046232	619344		NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
43192	chr11	75410571	75411500	+	0	NA	intron (NM_001256802, intron 6 of 6)	AluY|SINE|Alu	6614	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
183797	chr5	82217901	82218180	+	0	NA	intron (NM_031482, intron 5 of 7)	intron (NM_031482, intron 5 of 7)	60314	NM_001025	6228		NM_001025	ENSG00000186468	RPS23	BTDD|MABAS|MCINS|PAMAS|S23|uS12	ribosomal protein S23	protein-coding
63541	chr14	19337221	19337730	+	0	NA	intron (NR_110526, intron 1 of 7)	CpG	194	NR_122112	503638		NR_122111		DUXAP9	LINC01296|LNMAT1|SAN	double homeobox A pseudogene 9	pseudo
15150	chr1	148905521	148906080	+	0	NA	intron (NM_001195260, intron 2 of 4)	AluY|SINE|Alu	16240	NM_001002810	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
25278	chr10	6143121	6143500	+	0	NA	Intergenic	Intergenic	-1611	NR_136554	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
122719	chr19	49985721	49985980	+	0	NA	intron (NM_001308420, intron 12 of 12)	intron (NM_001308420, intron 12 of 12)	16186	NM_001348364	400709		NM_001348364	ENSG00000161643	SIGLEC16	SIGLECP16|Siglec-P16	sialic acid binding Ig like lectin 16	protein-coding
80045	chr16	1962481	1963000	+	0	NA	promoter-TSS (NR_002327)	promoter-TSS (NR_002327)	-274	NR_002327	574042		NR_002327	ENSG00000206811	SNORA10	ACA10|SNORA10A	small nucleolar RNA, H/ACA box 10	snoRNA
118967	chr19	38855251	38856050	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3303	NM_001005335	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
37573	chr11	19076651	19077280	+	0	NA	Intergenic	L2a|LINE|L2	-16248	NM_054030	117194		NM_054030	ENSG00000183695	MRGPRX2	MGRG3|MRGX2	MAS related GPR family member X2	protein-coding
64197	chr14	23020121	23020380	+	0	NA	Intergenic	Intergenic	-10107	NM_001282968	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
42177	chr11	67915851	67915950	+	0	NA	Intergenic	AluYf1|SINE|Alu	88197	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
122687	chr19	49888871	49889030	+	0	NA	TTS (NM_001168222)	TTS (NM_001168222)	775	NR_039905	100616314		NR_039905	ENSG00000284394	MIR4750	mir-4750	microRNA 4750	ncRNA
71872	chr15	22387421	22387970	+	0	NA	Intergenic	Intergenic	50331	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
38191	chr11	36376771	36376930	+	0	NA	intron (NM_024841, intron 2 of 9)	CpG-4158	865	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
212900	chr7	130891401	130891800	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-14061	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
59553	chr13	27293851	27294650	+	0	NA	Intergenic	LTR86A1|LTR|ERVL	23073	NM_001331126	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
20829	chr1	201479771	201480970	+	0	NA	Intergenic	Intergenic	-11182	NM_012396	23612		NM_012396	ENSG00000174307	PHLDA3	TIH1	pleckstrin homology like domain family A member 3	protein-coding
97420	chr17	43456801	43457230	+	0	NA	Intergenic	Intergenic	12209	NR_031751	100313779		NR_031751	ENSG00000284344	MIR2117	-	microRNA 2117	ncRNA
199401	chr6	116465371	116465530	+	0	NA	Intergenic	Intergenic	4075	NM_001010919	441168		NM_001010919	ENSG00000188820	CALHM6	C6orf187|FAM26F|INAM|dJ93H18.5	calcium homeostasis modulator family member 6	protein-coding
38898	chr11	47411971	47412780	+	0	NA	exon (NM_001128225, exon 4 of 10)	exon (NM_001128225, exon 4 of 10)	3785	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
4440	chr1	21300021	21300800	+	0	NA	TTS (NR_038404)	TTS (NR_038404)	7120	NR_038404	100506801		NR_038404	ENSG00000231105	ECE1-AS1	-	ECE1 antisense RNA 1	ncRNA
138250	chr2	203235421	203235680	+	0	NA	Intergenic	FRAM|SINE|Alu	-3468	NR_163981	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
204751	chr7	5588601	5588880	+	0	NA	Intergenic	Intergenic	-4076	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
13446	chr1	114467421	114469100	+	0	NA	intron (NM_033020, intron 1 of 18)	intron (NM_033020, intron 1 of 18)	42943	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
234278	chrX	13493671	13493830	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-75851	NM_015507	25975		NM_015507	ENSG00000198759	EGFL6	MAEG|W80	EGF like domain multiple 6	protein-coding
84945	chr16	31354301	31355180	+	0	NA	promoter-TSS (NM_001286375)	promoter-TSS (NM_001286375)	-436	NM_001286375	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
212650	chr7	129504071	129504250	+	0	NA	intron (NM_001195243, intron 1 of 1)	intron (NM_001195243, intron 1 of 1)	1629	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
49515	chr12	25381701	25382780	+	0	NA	Intergenic	Intergenic	-131311	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
203231	chr6	168875751	168876050	+	0	NA	Intergenic	Intergenic	88482	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
112156	chr19	5628421	5629430	+	0	NA	intron (NM_001320571, intron 2 of 18)	intron (NM_001320571, intron 2 of 18)	5842	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
50884	chr12	49233671	49234900	+	0	NA	intron (NM_001303114, intron 1 of 3)	intron (NM_001303114, intron 1 of 3)	6266	NM_001303115	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
11843	chr1	92959071	92959430	+	0	NA	intron (NM_001006605, intron 1 of 4)	AluJb|SINE|Alu	2212	NM_001006605	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
188990	chr5	166972151	166972500	+	0	NA	Intergenic	L1HS|LINE|L1	-45955	NR_108020	102557615		NR_108020	ENSG00000254130	LINC01947	CTB-7E3.1	long intergenic non-protein coding RNA 1947	ncRNA
104032	chr17	80127421	80128630	+	0	NA	Intergenic	L1ME1|LINE|L1	19103	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
46145	chr11	123048371	123049050	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	9446	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
47002	chr12	172171	172330	+	0	NA	TTS (NM_015232).2	TTS (NM_015232).2	-23081	NR_033859	574538		NR_033859	ENSG00000249695	LOC574538	-	uncharacterized LOC574538	ncRNA
171833	chr4	683801	684580	+	0	NA	intron (NM_032219, intron 6 of 9)	intron (NM_032219, intron 6 of 9)	4961	NM_001378060	84179		NM_032219	ENSG00000169026	SLC49A3	LP2561|MFSD7	solute carrier family 49 member 3	protein-coding
207555	chr7	44852051	44852580	+	0	NA	Intergenic	AluSx|SINE|Alu	-4189	NM_138635	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
113760	chr19	10510101	10511030	+	0	NA	Intergenic	Intergenic	6882	NM_030760	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
225943	chr9	40997721	40997980	+	0	NA	intron (NR_156730, intron 2 of 6)	MER30|DNA|hAT-Charlie	5589	NR_034006	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
108476	chr18	70662101	70662300	+	0	NA	Intergenic	Intergenic	-11246	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
143410	chr20	29444401	29444600	+	0	NA	Intergenic	Intergenic	-4017	NR_134504	105379477		NR_134504		LOC105379477	-	uncharacterized LOC105379477	ncRNA
81452	chr16	8883121	8883380	+	0	NA	Intergenic	Intergenic	-14238	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
170611	chr3	186999871	187000230	+	0	NA	intron (NM_173216, intron 2 of 7)	AluJr|SINE|Alu	-21805	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
1475	chr1	2693871	2694030	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-60934	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
113491	chr19	10082171	10082530	+	0	NA	Intergenic	AluSp|SINE|Alu	-3967	NM_018381	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
153411	chr22	24850171	24850730	+	0	NA	intron (NM_133454, intron 5 of 24)	intron (NM_133454, intron 5 of 24)	44229	NM_133454	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
179822	chr5	463521	464950	+	0	NA	intron (NM_007277, intron 9 of 12)	intron (NM_007277, intron 9 of 12)	8730	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
81234	chr16	4585271	4586150	+	0	NA	intron (NM_001145011, intron 7 of 15)	MLT1J|LTR|ERVL-MaLR	29178	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
36950	chr11	11036671	11037430	+	0	NA	Intergenic	Intergenic	178833	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
165992	chr3	108099021	108099480	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-8219	NM_001777	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
9776	chr1	53485451	53485850	+	0	NA	Intergenic	Intergenic	26251	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
79469	chr16	737101	737880	+	0	NA	intron (NM_022493, intron 2 of 10)	intron (NM_022493, intron 2 of 10)	3507	NM_022493	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
60929	chr13	46290651	46290950	+	0	NA	Intergenic	LTR78|LTR|ERV1	7044	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
18170	chr1	160799451	160799780	+	0	NA	intron (NM_001033667, intron 1 of 2)	intron (NM_001033667, intron 1 of 2)	3441	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
169430	chr3	161349501	161350230	+	0	NA	intron (NM_001320679, intron 2 of 3)	intron (NM_001320679, intron 2 of 3)	22218	NM_001040100	165679		NM_145035	ENSG00000196542	SPTSSB	ADMP|C3orf57|SSSPTB	serine palmitoyltransferase small subunit B	protein-coding
197737	chr6	87157821	87158080	+	0	NA	intron (NM_015021, intron 1 of 7)	AluSz|SINE|Alu	2385	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
153597	chr22	27612221	27612500	+	0	NA	Intergenic	Intergenic	189396	NM_002430	4330		NM_002430	ENSG00000169184	MN1	CEBALID|MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	MN1 proto-oncogene, transcriptional regulator	protein-coding
113517	chr19	10110701	10110900	+	0	NA	promoter-TSS (NM_002566)	promoter-TSS (NM_002566)	-893	NM_002566	5032		NM_002566	ENSG00000244165	P2RY11	P2Y11	purinergic receptor P2Y11	protein-coding
91987	chr17	7429521	7429780	+	0	NA	exon (NM_001364672, exon 3 of 3)	exon (NM_001364672, exon 3 of 3)	793	NM_001364708	107983988		NM_001364672	ENSG00000283439	SPEM3	-	SPEM family member 3	protein-coding
116579	chr19	18246821	18247080	+	0	NA	intron (NM_000923, intron 1 of 15)	AluSz|SINE|Alu	1250	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
12062	chr1	98468201	98468400	+	0	NA	Intergenic	Intergenic	-193421	NM_152238	51375		NM_015976	ENSG00000162627	SNX7	-	sorting nexin 7	protein-coding
45539	chr11	118757821	118758080	+	0	NA	intron (NM_004397, intron 9 of 13)	Tigger17c|DNA|TcMar-Tigger	32998	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
66265	chr14	61365651	61366130	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	44447	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
41531	chr11	66277751	66279200	+	0	NA	TTS (NM_030981)	TTS (NM_030981)	300	NR_073079	254263		NM_182553	ENSG00000174871	CNIH2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding
141545	chr2	241340721	241341000	+	0	NA	intron (NM_001321029, intron 8 of 13)	intron (NM_001321029, intron 8 of 13)	-15425	NM_001282984	9855		NM_014808	ENSG00000006607	FARP2	FIR|FRG|PLEKHC3	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein-coding
231350	chr9	130343351	130343780	+	0	NA	intron (NM_001291815, intron 25 of 97)	intron (NM_001291815, intron 25 of 97)	77805	NM_001291815	256158		NM_144655	ENSG00000148357	HMCN2	-	hemicentin 2	protein-coding
204939	chr7	6262371	6262730	+	0	NA	intron (NM_004227, intron 1 of 12)	L1MEg|LINE|L1	10074	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
134937	chr2	151424751	151424850	+	0	NA	intron (NM_018151, intron 8 of 35)	AluJb|SINE|Alu	14898	NM_001177665	55183		NM_018151	ENSG00000080345	RIF1	-	replication timing regulatory factor 1	protein-coding
192316	chr6	21667201	21667400	+	0	NA	intron (NR_015410, intron 1 of 11)	intron (NR_015410, intron 1 of 11)	887	NR_015410	401237		NR_015410		CASC15	CANT|LINC00340|lnc-SOX4-1	cancer susceptibility 15	ncRNA
233003	chr9	137007121	137007580	+	0	NA	3' UTR (NM_001606, exon 49 of 49)	3' UTR (NM_001606, exon 49 of 49)	-10782	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
28258	chr10	45671171	45671330	+	0	NA	intron (NM_001282906, intron 1 of 10)	L1PA6|LINE|L1	1482	NM_001282905	93550		NM_174890	ENSG00000172671	ZFAND4	ANUBL1	zinc finger AN1-type containing 4	protein-coding
45768	chr11	119259951	119260380	+	0	NA	intron (NM_005188, intron 2 of 15)	intron (NM_005188, intron 2 of 15)	52847	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
99833	chr17	55263351	55264030	+	0	NA	Intergenic	Intergenic	-1270	NM_002126	3131		NM_002126	ENSG00000108924	HLF	-	HLF transcription factor, PAR bZIP family member	protein-coding
215741	chr8	1816521	1818400	+	0	NA	TTS (NR_030326)	TTS (NR_030326)	229	NR_030326	693181		NR_030326	ENSG00000207826	MIR596	MIRN596|hsa-mir-596	microRNA 596	ncRNA
44483	chr11	105045181	105046050	+	0	NA	promoter-TSS (NM_052889)	promoter-TSS (NM_052889)	-280	NM_001017534	114769		NM_052889	ENSG00000204397	CARD16	COP|COP1|LLID-114769|PSEUDO-ICE	caspase recruitment domain family member 16	protein-coding
177912	chr4	129708951	129709050	+	0	NA	Intergenic	Intergenic	62478	NR_110753	101927282		NR_110753	ENSG00000246876	LINC02466	-	long intergenic non-protein coding RNA 2466	ncRNA
182824	chr5	69187701	69188050	+	0	NA	Intergenic	AluJr|SINE|Alu	-1708	NM_022909	64946		NM_022909	ENSG00000153044	CENPH	-	centromere protein H	protein-coding
10139	chr1	59816451	59817000	+	0	NA	intron (NM_015888, intron 1 of 21)	intron (NM_015888, intron 1 of 21)	1776	NM_015888	51361		NM_015888	ENSG00000134709	HOOK1	HK1	hook microtubule tethering protein 1	protein-coding
125193	chr2	10142421	10142850	+	0	NA	intron (NR_164157, intron 11 of 12)	intron (NR_164157, intron 11 of 12)	19896	NM_001034	6241		NM_001034	ENSG00000171848	RRM2	C2orf48|R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
120715	chr19	45265451	45265750	+	0	NA	intron (NM_001199867, intron 6 of 16)	intron (NM_001199867, intron 6 of 16)	14329	NM_031417	57787		NM_031417	ENSG00000007047	MARK4	MARK4L|MARK4S|MARKL1|MARKL1L|PAR-1D	microtubule affinity regulating kinase 4	protein-coding
66290	chr14	61390221	61391730	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	69532	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
188646	chr5	157233421	157234480	+	0	NA	intron (NM_005546, intron 8 of 16)	(AT)n|Simple_repeat|Simple_repeat	-32173	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
147574	chr20	61100601	61100800	+	0	NA	Intergenic	Intergenic	21636	NR_109919	100506470		NR_109919	ENSG00000229606	LINC01718	-	long intergenic non-protein coding RNA 1718	ncRNA
177283	chr4	109559401	109560600	+	0	NA	promoter-TSS (NM_017918)	promoter-TSS (NM_017918)	-246	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
64029	chr14	22517771	22518700	+	0	NA	Intergenic	Intergenic	-35276	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
237854	chrX	130120301	130121350	+	0	NA	Intergenic	CpG	-9934	NM_001127197	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
160381	chr3	27927971	27928130	+	0	NA	Intergenic	Intergenic	-93914	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
135990	chr2	172213251	172213350	+	0	NA	Intergenic	Intergenic	110294	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
113336	chr19	8611301	8611750	+	0	NA	promoter-TSS (NM_030957)	promoter-TSS (NM_030957)	-810	NM_030957	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
28778	chr10	62053501	62054150	+	0	NA	intron (NM_001244638, intron 2 of 6)	intron (NM_001244638, intron 2 of 6)	4468	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
133161	chr2	112726221	112727280	+	0	NA	intron (NM_001350494, intron 15 of 16)	intron (NM_001350494, intron 15 of 16)	5264	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
174787	chr4	48015651	48015750	+	0	NA	intron (NM_001379270, intron 1 of 10)	AluJb|SINE|Alu	981	NM_001379270	1259		NM_000087	ENSG00000198515	CNGA1	CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49	cyclic nucleotide gated channel subunit alpha 1	protein-coding
95445	chr17	36140651	36140950	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	35778	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
211255	chr7	102671021	102672150	+	0	NA	exon (NM_032959, exon 1 of 9)	exon (NM_032959, exon 1 of 9)	150	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
52568	chr12	56163401	56163880	+	0	NA	3' UTR (NM_001330288, exon 29 of 29)	3' UTR (NM_001330288, exon 29 of 29)	5281	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
23631	chr1	230282271	230282430	+	0	NA	TTS (NM_004481)	TTS (NM_004481)	143982	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
164389	chr3	58324301	58325180	+	0	NA	Intergenic	Intergenic	-8150	NM_001349539	54899		NM_017771	ENSG00000168297	PXK	MONAKA|SLOB	PX domain containing serine/threonine kinase like	protein-coding
136045	chr2	172509601	172509800	+	0	NA	Intergenic	MIR|SINE|MIR	-43678	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
20560	chr1	198715901	198716530	+	0	NA	intron (NM_002838, intron 12 of 32)	intron (NM_002838, intron 12 of 32)	77175	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
198115	chr6	90357721	90357800	+	0	NA	Intergenic	L1MC|LINE|L1	45018	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
10337	chr1	64913721	64913980	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	52699	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
8169	chr1	39524401	39524880	+	0	NA	intron (NR_144357, intron 9 of 11)	L2b|LINE|L2	9774	NR_132962	192217		NR_132962	ENSG00000237624	OXCT2P1	OXCT2P	3-oxoacid CoA-transferase 2 pseudogene 1	pseudo
93924	chr17	21295201	21295730	+	0	NA	intron (NM_002756, intron 1 of 11)	intron (NM_002756, intron 1 of 11)	7429	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
192537	chr6	25129771	25130300	+	0	NA	intron (NR_027626, intron 2 of 6)	MER4-int|LTR|ERV1	7788	NR_002174	8418		NM_003570	ENSG00000293489	CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
123056	chr19	51339701	51341350	+	0	NA	exon (NM_001163922, exon 3 of 10)	exon (NM_001163922, exon 3 of 10)	1599	NM_001163922	147645		NM_001163922	ENSG00000186806	VSIG10L	-	V-set and immunoglobulin domain containing 10 like	protein-coding
132458	chr2	105867801	105868200	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	16153	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
226896	chr9	78296721	78298250	+	0	NA	intron (NM_021154, intron 1 of 7)	CpG	360	NM_058179	29968		NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding
186332	chr5	134651721	134651980	+	0	NA	intron (NM_001252231, intron 1 of 12)	intron (NM_001252231, intron 1 of 12)	3065	NM_021982	10802		NM_021982	ENSG00000113615	SEC24A	-	SEC24 homolog A, COPII coat complex component	protein-coding
124598	chr2	867301	867500	+	0	NA	intron (NR_033880, intron 1 of 3)	intron (NR_033880, intron 1 of 3)	1026	NR_111963	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
6103	chr1	27328901	27329300	+	0	NA	intron (NR_037576, intron 1 of 6)	intron (NR_037576, intron 1 of 6)	5226	NR_033926	644961		NR_033926		ACTG1P20	-	actin gamma 1 pseudogene 20	pseudo
160887	chr3	33717411	33719000	+	0	NA	promoter-TSS (NM_001365633)	promoter-TSS (NM_001365633)	49	NM_001365628	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
142774	chr20	11892121	11892380	+	0	NA	promoter-TSS (NM_001282550)	promoter-TSS (NM_001282550)	-243	NM_001282550	22903		NM_014962	ENSG00000132640	BTBD3	dJ742J24.1	BTB domain containing 3	protein-coding
193753	chr6	31306151	31306450	+	0	NA	Intergenic	Intergenic	-4663	NR_149115	105375015		NR_149115	ENSG00000256166	LINC02571	-	long intergenic non-protein coding RNA 2571	ncRNA
31832	chr10	99555771	99556180	+	0	NA	Intergenic	Intergenic	23033	NM_145285	159296		NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
151577	chr21	46624001	46624200	+	0	NA	Intergenic	Intergenic	-11495	NM_001286677	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
194233	chr6	32415251	32415750	+	0	NA	Intergenic	Intergenic	-8370	NM_001304561	56244		NM_019602	ENSG00000204290	BTNL2	BTL-II|BTN7|HSBLMHC1|SS2	butyrophilin like 2	protein-coding
191185	chr6	5176601	5176800	+	0	NA	intron (NM_001164841, intron 2 of 3)	intron (NM_001164841, intron 2 of 3)	-28378	NR_037462	100500900		NR_037462	ENSG00000265083	MIR3691	mir-3691	microRNA 3691	ncRNA
200931	chr6	139156201	139156480	+	0	NA	intron (NM_016217, intron 1 of 3)	AluJb|SINE|Alu	21260	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
215412	chr7	157585371	157585730	+	0	NA	intron (NM_130842, intron 16 of 21)	intron (NM_130842, intron 16 of 21)	-11128	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
20595	chr1	198761151	198761450	+	0	NA	Intergenic	L1PA13|LINE|L1	97682	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
205858	chr7	24962501	24962700	+	0	NA	intron (NM_015550, intron 1 of 22)	MLT1K|LTR|ERVL-MaLR	17578	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
52739	chr12	56633151	56633480	+	0	NA	intron (NM_001351156, intron 1 of 30)	intron (NM_001351156, intron 1 of 30)	-2989	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
87908	chr16	79042921	79043180	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	557687	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
119129	chr19	39366421	39367080	+	0	NA	intron (NM_001384588, intron 4 of 13)	intron (NM_001384588, intron 4 of 13)	24329	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
208424	chr7	66759771	66760030	+	0	NA	intron (NM_001287061, intron 1 of 8)	MER68|LTR|ERVL	4018	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
28941	chr10	63212971	63213130	+	0	NA	intron (NM_001322258, intron 7 of 24)	AluSg|SINE|Alu	56173	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
207632	chr7	45029671	45030030	+	0	NA	intron (NM_001029835, intron 1 of 9)	intron (NM_001029835, intron 1 of 9)	2216	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
77533	chr15	84723421	84723680	+	0	NA	Intergenic	L2c|LINE|L2	-7090	NM_001271920	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
202755	chr6	159040251	159040350	+	0	NA	intron (NM_054114, intron 7 of 9)	intron (NM_054114, intron 7 of 9)	2053	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
131423	chr2	96287151	96287530	+	0	NA	intron (NM_014014, intron 26 of 44)	intron (NM_014014, intron 26 of 44)	18206	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
193904	chr6	31625651	31626550	+	0	NA	exon (NM_080686, exon 9 of 31).2	exon (NM_080686, exon 9 of 31).2	3021	NR_002971	677820		NR_002971	ENSG00000200816	SNORA38	ACA38	small nucleolar RNA, H/ACA box 38	snoRNA
226437	chr9	71639551	71639650	+	0	NA	Intergenic	L2|LINE|L2	128913	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
178009	chr4	139312071	139312230	+	0	NA	intron (NM_057175, intron 1 of 19)	Tigger12c|DNA|TcMar-Tigger	-9599	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
76046	chr15	72270571	72270730	+	0	NA	intron (NR_136611, intron 2 of 22)	L2a|LINE|L2	1904	NM_001323530	56965		NM_020213	ENSG00000137817	PARP6	ARTD17|PARP-6-B1|PARP-6-C|pART17	poly(ADP-ribose) polymerase family member 6	protein-coding
111471	chr19	3947271	3947430	+	0	NA	Intergenic	Intergenic	13879	NM_001375469	27231		NM_014446	ENSG00000077009	NMRK2	ITGB1BP3|MIBP|NRK2	nicotinamide riboside kinase 2	protein-coding
67447	chr14	70780751	70781050	+	0	NA	intron (NM_001284231, intron 1 of 11)	intron (NM_001284231, intron 1 of 11)	2552	NM_001284232	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
29007	chr10	63464851	63466950	+	0	NA	promoter-TSS (NM_032776)	promoter-TSS (NM_032776)	77	NM_032776	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
96700	chr17	41403821	41404550	+	0	NA	intron (NR_040111, intron 1 of 2)	MIRc|SINE|MIR	1769	NR_040111	100505782		NR_040111	ENSG00000234859	LOC100505782	-	uncharacterized LOC100505782	ncRNA
190810	chr6	1389301	1389780	+	0	NA	promoter-TSS (NM_001452)	promoter-TSS (NM_001452)	-36	NM_001452	2295		NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
72440	chr15	31708021	31708930	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	162198	NM_001382637	161725		NM_130901	ENSG00000169918	OTUD7A	C15orf16|C16ORF15|CEZANNE2|NEDHS|OTUD7	OTU deubiquitinase 7A	protein-coding
153742	chr22	29313151	29313780	+	0	NA	TTS (NM_001278730)	TTS (NM_001278730)	2232	NM_006477	10633		NM_006477	ENSG00000100276	RASL10A	RRP22	RAS like family 10 member A	protein-coding
193654	chr6	30885801	30886600	+	0	NA	intron (NM_013993, intron 2 of 18).2	intron (NM_013993, intron 2 of 18).2	1220	NM_001202523	780		NM_001954	ENSG00000204580	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
174619	chr4	40299651	40300550	+	0	NA	Intergenic	Intergenic	-7085	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
142673	chr20	6003221	6003630	+	0	NA	intron (NR_110101, intron 1 of 4)	intron (NR_110101, intron 1 of 4)	2396	NR_110101	101929225		NR_110101	ENSG00000278719	MCM8-AS1	-	MCM8 antisense RNA 1	ncRNA
235140	chrX	41094221	41094480	+	0	NA	intron (NM_001039590, intron 1 of 44)	AluSq2|SINE|Alu	8905	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
1427	chr1	2584901	2586000	+	0	NA	TTS (NR_121638)	TTS (NR_121638)	-1073	NR_036637	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
139432	chr2	222939221	222939500	+	0	NA	intron (NM_203372, intron 15 of 15)	intron (NM_203372, intron 15 of 15)	78324	NM_001354158	2181		NM_004457	ENSG00000123983	ACSL3	ACS3|FACL3|LACS 3|LACS3|PRO2194	acyl-CoA synthetase long chain family member 3	protein-coding
177666	chr4	121656201	121656440	+	0	NA	Intergenic	Intergenic	40660	NM_001154	308		NM_001154	ENSG00000164111	ANXA5	ANX5|CPB-I|ENX2|HEL-S-7|PP4|RPRGL3|VAC-alph	annexin A5	protein-coding
135646	chr2	168293851	168293950	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-46305	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
65516	chr14	51902621	51903150	+	0	NA	intron (NM_053064, intron 2 of 3)	AluJr|SINE|Alu	15686	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
195772	chr6	40461701	40461900	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	83463	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
175388	chr4	70733051	70733350	+	0	NA	intron (NM_001037442, intron 1 of 17)	intron (NM_001037442, intron 1 of 17)	-1210	NM_001291993	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
130757	chr2	86815421	86816350	+	0	NA	intron (NM_001178100, intron 3 of 3)	intron (NM_001178100, intron 3 of 3)	-7489	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
200759	chr6	137819421	137820450	+	0	NA	Intergenic	Intergenic	-47324	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
68148	chr14	75551171	75551730	+	0	NA	Intergenic	Intergenic	-27170	NM_017791	55640		NM_017791	ENSG00000119686	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2	FLVCR choline and putative heme transporter 2	protein-coding
13628	chr1	116418121	116418910	+	0	NA	promoter-TSS (NR_027645)	promoter-TSS (NR_027645)	44	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
188679	chr5	157273901	157274950	+	0	NA	intron (NM_014376, intron 1 of 30)	L1MB8|LINE|L1	5101	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
178303	chr4	145175751	145176050	+	0	NA	intron (NM_001366057, intron 1 of 20)	intron (NM_001366057, intron 1 of 20)	2258	NM_017493	54726		NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
56794	chr12	120200501	120202900	+	0	NA	promoter-TSS (NM_001002)	promoter-TSS (NM_001002)	409	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
159914	chr3	16940421	16941100	+	0	NA	intron (NM_015184, intron 1 of 5)	MIRb|SINE|MIR	7564	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
119994	chr19	41919671	41920050	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	8589	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
10906	chr1	83355771	83356030	+	0	NA	Intergenic	L1PA2|LINE|L1	-90154	NR_146478	101927542		NR_146478		LINC01712	-	long intergenic non-protein coding RNA 1712	ncRNA
183542	chr5	80103171	80103730	+	0	NA	Intergenic	MER39B|LTR|ERV1	-19785	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
161704	chr3	43627501	43627700	+	0	NA	intron (NM_001346468, intron 1 of 12)	LTR67B|LTR|ERVL	-5523	NM_001346463	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
128035	chr2	47369151	47369780	+	0	NA	5' UTR (NM_002354, exon 1 of 9)	5' UTR (NM_002354, exon 1 of 9)	154	NM_002354	4072		NM_002354	ENSG00000119888	EPCAM	Ber-Ep4|BerEp4|DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|LYNCH8|M4S1|MIC18|MK-1|MOC-31|TACSTD1|TROP1	epithelial cell adhesion molecule	protein-coding
103665	chr17	78785071	78786250	+	0	NA	Intergenic	AluJb|SINE|Alu	-3318	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
68841	chr14	91287521	91288150	+	0	NA	intron (NM_001080414, intron 25 of 29)	intron (NM_001080414, intron 25 of 29)	-33955	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
92692	chr17	13601551	13602100	+	0	NA	5' UTR (NM_006042, exon 1 of 2)	5' UTR (NM_006042, exon 1 of 2)	104	NM_006042	9955		NM_006042	ENSG00000153976	HS3ST3A1	3-OST-3A|3OST3A1	heparan sulfate-glucosamine 3-sulfotransferase 3A1	protein-coding
34847	chr11	320121	321730	+	0	NA	promoter-TSS (NM_021034)	promoter-TSS (NM_021034)	-65	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
129691	chr2	70552271	70552700	+	0	NA	intron (NM_001099691, intron 1 of 5)	intron (NM_001099691, intron 1 of 5)	961	NM_001308159	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
162928	chr3	49442751	49443200	+	0	NA	Intergenic	AluSg7|SINE|Alu	-13651	NM_032316	84276		NM_032316	ENSG00000145029	NICN1	-	nicolin 1, tubulin polyglutamylase complex subunit	protein-coding
62085	chr13	94548571	94550330	+	0	NA	promoter-TSS (NM_001322186)	promoter-TSS (NM_001322186)	-44	NM_001322184	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
177698	chr4	121926071	121926230	+	0	NA	intron (NM_001366479, intron 2 of 10)	MER65A|LTR|ERV1	6963	NM_003305	7222		NM_003305	ENSG00000138741	TRPC3	SCA41|TRP3	transient receptor potential cation channel subfamily C member 3	protein-coding
64399	chr14	24166951	24167250	+	0	NA	TTS (NM_006084).2	TTS (NM_006084).2	-4980	NM_005132	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
42379	chr11	68838521	68840370	+	0	NA	intron (NM_001031847, intron 1 of 18)	CpG	2471	NM_001876	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
116546	chr19	18211571	18211730	+	0	NA	intron (NM_001330172, intron 15 of 15)	intron (NM_001330172, intron 15 of 15)	6920	NR_134910	102725254		NR_134910	ENSG00000268650	LOC102725254	-	uncharacterized LOC102725254	ncRNA
121152	chr19	46349301	46350030	+	0	NA	intron (NM_001204284, intron 1 of 11)	L2|LINE|L2	2578	NM_001204284	5536		NM_006247	ENSG00000011485	PPP5C	PP5|PPP5|PPT	protein phosphatase 5 catalytic subunit	protein-coding
16282	chr1	154154371	154155730	+	0	NA	promoter-TSS (NM_001159484)	promoter-TSS (NM_001159484)	66	NM_207308	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
93368	chr17	18241271	18242930	+	0	NA	intron (NM_004140, intron 19 of 22)	intron (NM_004140, intron 19 of 22)	16465	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
21494	chr1	205733171	205733330	+	0	NA	intron (NM_022731, intron 1 of 6)	L3|LINE|CR1	16932	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
214848	chr7	151312801	151313380	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-28722	NM_001385355	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
118355	chr19	35646751	35647130	+	0	NA	Intergenic	L2a|LINE|L2	-1383	NM_001863	1340		NM_001863	ENSG00000126267	COX6B1	COX6B|COXG|COXVIb1|MC4DN7	cytochrome c oxidase subunit 6B1	protein-coding
93677	chr17	19284301	19285000	+	0	NA	intron (NM_148921, intron 3 of 9)	intron (NM_148921, intron 3 of 9)	13257	NR_046824	100874309		NR_046824		EPN2-IT1	-	EPN2 intronic transcript 1	ncRNA
161603	chr3	43181051	43181600	+	0	NA	Intergenic	Intergenic	-75246	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
89651	chr16	89348871	89349450	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	28708	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
165485	chr3	99823621	99824080	+	0	NA	promoter-TSS (NR_110821)	promoter-TSS (NR_110821)	15	NR_110821	101929357		NR_110821		HP09053	-	uncharacterized LOC101929357	ncRNA
141321	chr2	240466551	240466850	+	0	NA	3' UTR (NM_002081, exon 9 of 9)	3' UTR (NM_002081, exon 9 of 9)	-10000	NR_161169	100130449		NR_024014	ENSG00000218416	GPC1-AS1	-	GPC1 antisense RNA 1	ncRNA
224189	chr9	5433371	5433780	+	0	NA	intron (NM_018465, intron 2 of 5)	SVA_F|Retroposon|SVA	4350	NM_018465	55848		NM_018465	ENSG00000107020	PLGRKT	AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT)	plasminogen receptor with a C-terminal lysine	protein-coding
11419	chr1	89722601	89722800	+	0	NA	Intergenic	Intergenic	89580	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
164083	chr3	55942351	55942450	+	0	NA	intron (NM_015576, intron 12 of 16)	AluYa5|SINE|Alu	-89806	NR_037502	100500875		NR_037502	ENSG00000264013	MIR3938	-	microRNA 3938	ncRNA
15411	chr1	150244621	150244880	+	0	NA	Intergenic	AluJb|SINE|Alu	-8638	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
14006	chr1	120706271	120706430	+	0	NA	Intergenic	L2c|LINE|L2	-17589	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
206225	chr7	28921821	28922100	+	0	NA	Intergenic	Intergenic	36370	NM_014817	9865		NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
49134	chr12	14923921	14924180	+	0	NA	intron (NM_152321, intron 3 of 6)	L1MA6|LINE|L1	5075	NM_001300784	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
103801	chr17	79080821	79081100	+	0	NA	exon (NM_001042573, exon 6 of 14)	exon (NM_001042573, exon 6 of 14)	6136	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
48268	chr12	8657321	8657750	+	0	NA	intron (NM_001297710, intron 2 of 7)	intron (NM_001297710, intron 2 of 7)	5291	NM_003480	8076		NM_003480	ENSG00000197614	MFAP5	AAT9|MAGP-2|MAGP2|MFAP-5|MP25	microfibril associated protein 5	protein-coding
74524	chr15	60476551	60477280	+	0	NA	intron (NR_147171, intron 2 of 16)	intron (NR_147171, intron 2 of 16)	2227	NM_001276385	79664		NM_024611	ENSG00000128915	ICE2	BRCC1|NARG2	interactor of little elongation complex ELL subunit 2	protein-coding
4304	chr1	20187221	20188000	+	0	NA	intron (NM_152376, intron 1 of 1)	intron (NM_152376, intron 1 of 1)	-1092	NM_001316722	391013		NM_001105572	ENSG00000187980	PLA2G2C	UBXN10-AS1	phospholipase A2 group IIC	protein-coding
160506	chr3	30632721	30632980	+	0	NA	intron (NM_001024847, intron 2 of 7)	MIRb|SINE|MIR	26249	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
179795	chr5	373551	374500	+	0	NA	intron (NR_165159, intron 5 of 13)	CpG	51415	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
181777	chr5	50746771	50746930	+	0	NA	intron (NM_024615, intron 2 of 25)	AluJr4|SINE|Alu	79436	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
168252	chr3	141407921	141408600	+	0	NA	intron (NM_001376166, intron 2 of 2)	intron (NM_001376166, intron 2 of 2)	5246	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
157824	chr22	47195371	47195730	+	0	NA	Intergenic	Intergenic	-150021	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
161953	chr3	46228321	46228950	+	0	NA	Intergenic	Intergenic	-13746	NM_178328	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
124566	chr2	636451	637300	+	0	NA	Intergenic	CpG	39829	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
165618	chr3	101690101	101690530	+	0	NA	Intergenic	Intergenic	-3597	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
108449	chr18	70184651	70184750	+	0	NA	intron (NM_173630, intron 10 of 48)	L1MEc|LINE|L1	20987	NM_001318520	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
219144	chr8	66318251	66318350	+	0	NA	Intergenic	L1P1|LINE|L1	110677	NR_040434	100505676		NM_001242759	ENSG00000246145	RRS1-DT	RRS1-AS1	RRS1 divergent transcript	ncRNA
238447	chrX	152451351	152451450	+	0	NA	promoter-TSS (NM_000808)	promoter-TSS (NM_000808)	-85	NM_000808	2556		NM_000808	ENSG00000011677	GABRA3	EPILX2	gamma-aminobutyric acid type A receptor subunit alpha3	protein-coding
75662	chr15	67750821	67751080	+	0	NA	intron (NM_145160, intron 19 of 21)	intron (NM_145160, intron 19 of 21)	-74559	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
33598	chr10	119529201	119529400	+	0	NA	intron (NM_001005339, intron 1 of 4)	AluSq2|SINE|Alu	7233	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
226868	chr9	78103921	78104250	+	0	NA	Intergenic	Intergenic	-72274	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
25758	chr10	10696401	10696600	+	0	NA	intron (NM_001326321, intron 2 of 15)	L1PA3|LINE|L1	98414	NR_027082	207107		NR_027082	ENSG00000225383	SFTA1P	SFTPF	surfactant associated 1, lncRNA	pseudo
22696	chr1	223920801	223921000	+	0	NA	Intergenic	L3|LINE|CR1	71744	NR_132119	441124		NR_132119		GTF2IP20	-	general transcription factor IIi pseudogene 20	pseudo
127519	chr2	42309051	42309630	+	0	NA	intron (NM_019063, intron 17 of 22)	AluJo|SINE|Alu	50698	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
185250	chr5	123503371	123503530	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-8649	NM_001031812	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
151320	chr21	45558801	45559000	+	0	NA	intron (NM_001352511, intron 1 of 5)	AluSc|SINE|Alu	4125	NM_001352511	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
99180	chr17	49452071	49452530	+	0	NA	Intergenic	Intergenic	9449	NR_110805	101927207		NR_110805	ENSG00000249497	LINC02075	-	long intergenic non-protein coding RNA 2075	ncRNA
172731	chr4	2821471	2821630	+	0	NA	intron (NM_001145856, intron 2 of 12)	intron (NM_001145856, intron 2 of 12)	2736	NM_003023	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
27417	chr10	31399671	31399830	+	0	NA	promoter-TSS (NM_001368169)	promoter-TSS (NM_001368169)	5	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
200512	chr6	135875971	135876500	+	0	NA	intron (NM_018945, intron 1 of 12)	LTR16B1|LTR|ERVL	24534	NM_018945	27115		NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
226992	chr9	83596921	83597180	+	0	NA	Intergenic	Intergenic	-25999	NM_001256915	414328		NM_001001551	ENSG00000148057	IDNK	C9orf103|bA522I20.2|hGntK	IDNK gluconokinase	protein-coding
2799	chr1	10937371	10937950	+	0	NA	Intergenic	Intergenic	29027	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
187177	chr5	140643771	140643930	+	0	NA	exon (NM_001300982, exon 7 of 10)	exon (NM_001300982, exon 7 of 10)	3780	NM_002488	4695		NM_002488	ENSG00000131495	NDUFA2	B8|CD14|CIB8|MC1DN13	NADH:ubiquinone oxidoreductase subunit A2	protein-coding
164761	chr3	69089021	69089280	+	0	NA	intron (NM_006407, intron 1 of 2)	intron (NM_006407, intron 1 of 2)	4213	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
185964	chr5	133058071	133058680	+	0	NA	intron (NM_002154, intron 1 of 18)	AluJr|SINE|Alu	6362	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
157046	chr22	42576121	42576650	+	0	NA	intron (NR_002184, intron 5 of 6)	intron (NR_002184, intron 5 of 6)	5626	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
34917	chr11	410271	412900	+	0	NA	intron (NM_021805, intron 1 of 9)	intron (NM_021805, intron 1 of 9)	3414	NM_001135054	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
219775	chr8	81113251	81113350	+	0	NA	Intergenic	Intergenic	-1232	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
194581	chr6	33426501	33427300	+	0	NA	intron (NM_006772, intron 3 of 18).2	intron (NM_006772, intron 3 of 18).2	6835	NM_006772	8831		NM_006772	ENSG00000197283	SYNGAP1	MRD5|RASA1|RASA5|SYNGAP	synaptic Ras GTPase activating protein 1	protein-coding
49635	chr12	28223971	28224230	+	0	NA	intron (NM_001352080, intron 2 of 13)	intron (NM_001352080, intron 2 of 13)	-33362	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
44989	chr11	116947671	116947830	+	0	NA	intron (NM_001366686, intron 3 of 24)	AluYf1|SINE|Alu	-109800	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
8838	chr1	43227301	43227850	+	0	NA	intron (NM_001378189, intron 18 of 22)	L2|LINE|L2	-42408	NM_001320244	128218		NM_144626	ENSG00000179178	TMEM125	-	transmembrane protein 125	protein-coding
76304	chr15	74328571	74328930	+	0	NA	intron (NM_182791, intron 1 of 8)	intron (NM_182791, intron 1 of 8)	10191	NM_182791	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
48808	chr12	12010101	12011600	+	0	NA	Intergenic	Intergenic	-39011	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
3449	chr1	15917771	15917930	+	0	NA	intron (NM_015001, intron 6 of 14)	intron (NM_015001, intron 6 of 14)	58251	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
140149	chr2	231601621	231602400	+	0	NA	Intergenic	AluJo|SINE|Alu	9146	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
68911	chr14	91358921	91359480	+	0	NA	intron (NM_001080414, intron 4 of 29)	AluY|SINE|Alu	58620	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
15210	chr1	149378501	149378930	+	0	NA	Intergenic	Intergenic	-11906	NM_001364012	100996717		NM_001364012	ENSG00000286219	NOTCH2NLC	ETM6|N2N|NIID|NOTCH2NL|NOTCH2NLA|OPDM3	notch 2 N-terminal like C	protein-coding
181621	chr5	44933151	44933650	+	0	NA	Intergenic	L1MA6|LINE|L1	124453	NM_016640	10884		NM_016640	ENSG00000112996	MRPS30	MRP-S30|PAP|PDCD9|S30mt|mL65	mitochondrial ribosomal protein S30	protein-coding
166943	chr3	125148371	125148930	+	0	NA	intron (NM_024628, intron 5 of 13)	intron (NM_024628, intron 5 of 13)	2902	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
193248	chr6	29941001	29941600	+	0	NA	Intergenic	Intergenic	-1170	NM_001242758	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
114162	chr19	11352571	11352930	+	0	NA	intron (NM_001080503, intron 7 of 10)	AluJb|SINE|Alu	-2682	NM_001170635	64748		NM_022737	ENSG00000105520	PLPPR2	LPPR2|PRG4	phospholipid phosphatase related 2	protein-coding
30834	chr10	86403671	86404030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-37055	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
4066	chr1	19064571	19065300	+	0	NA	Intergenic	MIR3|SINE|MIR	-108259	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
139997	chr2	230944451	230944830	+	0	NA	Intergenic	Intergenic	-19398	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
209999	chr7	93016201	93016400	+	0	NA	Intergenic	Intergenic	101679	NM_017654	54809		NM_017654	ENSG00000205413	SAMD9	C7orf5|DRIF1|M7MLS2|MIRAGE|NFTC|OEF1|OEF2	sterile alpha motif domain containing 9	protein-coding
170861	chr3	192467301	192467530	+	0	NA	intron (NM_001377293, intron 1 of 4)	intron (NM_001377293, intron 1 of 4)	-47607	NR_046598	100873987		NR_046598	ENSG00000230126	FGF12-AS2	-	FGF12 antisense RNA 2	ncRNA
120701	chr19	45172171	45172600	+	0	NA	intron (NM_001270891, intron 1 of 5)	intron (NM_001270891, intron 1 of 5)	5852	NM_024108	79090		NM_024108	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex subunit 6A	protein-coding
164490	chr3	60064301	60064500	+	0	NA	intron (NM_001320901, intron 2 of 6)	intron (NM_001320901, intron 2 of 6)	16509	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
110754	chr19	2345221	2345480	+	0	NA	intron (NM_152988, intron 13 of 14)	intron (NM_152988, intron 13 of 14)	16666	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
48101	chr12	7638521	7639220	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	27038	NM_001644	339		NM_001644	ENSG00000111701	APOBEC1	APO1|APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme catalytic subunit 1	protein-coding
140092	chr2	231456471	231457400	+	0	NA	promoter-TSS (NR_002921)	promoter-TSS (NR_002921)	-412	NR_002908	6082		NR_002908	ENSG00000207280	SNORD20	RNU20|U20	small nucleolar RNA, C/D box 20	snoRNA
44238	chr11	96554471	96554630	+	0	NA	Intergenic	L2a|LINE|L2	46125	NR_135097	105369443		NR_135097	ENSG00000256684	LINC02737	-	long intergenic non-protein coding RNA 2737	ncRNA
228766	chr9	110251971	110252130	+	0	NA	intron (NM_003329, intron 1 of 4)	AluSx4|SINE|Alu	4457	NM_003329	7295		NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1|TXN1|Trx80	thioredoxin	protein-coding
182079	chr5	55986051	55986350	+	0	NA	intron (NR_157112, intron 1 of 17)	L1MEc|LINE|L1	8763	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
110903	chr19	2748951	2749680	+	0	NA	Intergenic	Intergenic	-9239	NM_213568	29985		NM_144564	ENSG00000141873	SLC39A3	ZIP-3|ZIP3	solute carrier family 39 member 3	protein-coding
60423	chr13	40984611	40985230	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	-2021	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
167104	chr3	127596471	127596630	+	0	NA	intron (NM_001353004, intron 1 of 12)	L2b|LINE|L2	1681	NM_001353007	131601		NM_016372	ENSG00000163870	TPRA1	GPR175|TMEM227|TPRA40	transmembrane protein adipocyte associated 1	protein-coding
79963	chr16	1776121	1777000	+	0	NA	TTS (NM_001257370)	TTS (NM_001257370)	3332	NM_001257370	197342		NM_001010865	ENSG00000197774	EME2	SLX2B|gs125	essential meiotic structure-specific endonuclease subunit 2	protein-coding
98074	chr17	45501221	45501830	+	0	NA	Intergenic	Intergenic	-10804	NR_027782	9842		NM_014798	ENSG00000225190	PLEKHM1	AP162|B2|OPTA3|OPTB6	pleckstrin homology and RUN domain containing M1	protein-coding
21608	chr1	206564451	206564550	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	7336	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
60375	chr13	40936171	40937000	+	0	NA	intron (NM_001370329, intron 9 of 9)	AluY|SINE|Alu	-14811	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
30017	chr10	73781471	73783050	+	0	NA	intron (NM_203298, intron 1 of 2)	CpG	212	NM_203298	118487		NM_203298	ENSG00000172586	CHCHD1	C10orf34|C2360|MRP-S37|mS37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding
40089	chr11	62791131	62792650	+	0	NA	TTS (NM_001081491)	TTS (NM_001081491)	116	NM_001080501	79064		NM_024084	ENSG00000168569	TMEM223	Mrx15	transmembrane protein 223	protein-coding
147225	chr20	57399541	57400630	+	0	NA	intron (NM_001291780, intron 4 of 4)	intron (NM_001291780, intron 4 of 4)	-7029	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
126099	chr2	25874951	25875250	+	0	NA	intron (NM_018263, intron 1 of 11)	intron (NM_018263, intron 1 of 11)	3387	NM_018263	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
109149	chr18	80260571	80260730	+	0	NA	Intergenic	LTR10C|LTR|ERV1	-13136	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
218444	chr8	47957401	47957700	+	0	NA	intron (NM_006904, intron 1 of 85)	AluY|SINE|Alu	2586	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
239147	chrY	11326071	11326800	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1095155	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
170605	chr3	186961621	186961880	+	0	NA	intron (NM_173216, intron 1 of 7)	intron (NM_173216, intron 1 of 7)	31224	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
33102	chr10	110928671	110928830	+	0	NA	intron (NR_136749, intron 1 of 7)	AluJb|SINE|Alu	8505	NR_026715	644511		NR_026715	ENSG00000234118	RPL13AP6	RPL13A_7_1096|bA348N5.5	ribosomal protein L13a pseudogene 6	pseudo
127752	chr2	43773961	43774750	+	0	NA	intron (NM_016008, intron 1 of 12)	intron (NM_016008, intron 1 of 12)	316	NM_001348913	51626		NM_015522	ENSG00000138036	DYNC2LI1	CGI-60|D2LIC|LIC3	dynein cytoplasmic 2 light intermediate chain 1	protein-coding
191269	chr6	6045821	6046280	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-38445	NM_001278710	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
148379	chr20	63892971	63893430	+	0	NA	Intergenic	AluSx|SINE|Alu	-1926	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
153405	chr22	24808951	24809250	+	0	NA	intron (NM_133454, intron 2 of 24)	MIRb|SINE|MIR	2879	NM_133454	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
223859	chr9	107171	107750	+	0	NA	Intergenic	SATR1|Satellite|Satellite	10957	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
110653	chr19	2243801	2244530	+	0	NA	intron (NM_007165, intron 2 of 8)	intron (NM_007165, intron 2 of 8)	-5158	NM_000479	268		NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
122635	chr19	49830701	49831100	+	0	NA	intron (NM_030973, intron 9 of 17)	intron (NM_030973, intron 9 of 17)	-1118	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
126142	chr2	26178521	26180450	+	0	NA	intron (NM_001168241, intron 2 of 5)	intron (NM_001168241, intron 2 of 5)	-1231	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
111556	chr19	4046871	4047450	+	0	NA	3' UTR (NM_001317990, exon 3 of 3)	3' UTR (NM_001317990, exon 3 of 3)	18369	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
184220	chr5	96279951	96280050	+	0	NA	intron (NR_130776, intron 1 of 4)	intron (NR_130776, intron 1 of 4)	152159	NM_001177875	5122		NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC1/3|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
170955	chr3	194409901	194410300	+	0	NA	intron (NR_164666, intron 32 of 32)	intron (NR_164666, intron 32 of 32)	-10834	NM_004488	2814		NM_004488	ENSG00000178732	GP5	CD42d|GPV	glycoprotein V platelet	protein-coding
217678	chr8	30108171	30108330	+	0	NA	3' UTR (NM_015344, exon 4 of 4)	3' UTR (NM_015344, exon 4 of 4)	12842	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
55517	chr12	105108971	105109230	+	0	NA	intron (NM_001293640, intron 1 of 32)	AluSq2|SINE|Alu	1369	NM_015275	23325		NM_015275	ENSG00000136051	WASHC4	KIAA1033|MRT43|SWIP	WASH complex subunit 4	protein-coding
109092	chr18	79962901	79963570	+	0	NA	Intergenic	L1MB7|LINE|L1	-1408	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
89709	chr16	89406101	89406550	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-24593	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
72241	chr15	30435351	30435850	+	0	NA	Intergenic	Intergenic	-21340	NM_001282484	101059918		NM_001282484	ENSG00000186399	GOLGA8R	-	golgin A8 family member R	protein-coding
180075	chr5	1102171	1102980	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	9488	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
59314	chr13	24299401	24300000	+	0	NA	intron (NM_153023, intron 10 of 11)	intron (NM_153023, intron 10 of 11)	-7466	NM_001303138	338872		NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and TNF related 9	protein-coding
199688	chr6	122839571	122839800	+	0	NA	Intergenic	Intergenic	50427	NM_006714	10924		NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	sphingomyelin phosphodiesterase acid like 3A	protein-coding
126393	chr2	27580221	27580850	+	0	NA	exon (NM_032266, exon 1 of 1)	exon (NM_032266, exon 1 of 1)	-2434	NM_001271288	84450		NM_032434	ENSG00000243943	ZNF512	-	zinc finger protein 512	protein-coding
227031	chr9	83959871	83960030	+	0	NA	Intergenic	AluYf1|SINE|Alu	-2964	NM_001317997	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
227304	chr9	89418521	89419500	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	60880	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
88303	chr16	84118901	84119100	+	0	NA	Intergenic	Intergenic	-2058	NM_003791	8720		NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SEDKF|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
217351	chr8	27797051	27797400	+	0	NA	intron (NM_001017420, intron 9 of 10)	L1MA9|LINE|L1	22671	NM_001017420	157570		NM_001017420	ENSG00000171320	ESCO2	2410004I17Rik|EFO2|EFO2p|JHS|RBS|hEFO2	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding
95542	chr17	36625821	36626200	+	0	NA	Intergenic	Intergenic	24427	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
130328	chr2	84981451	84981550	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	10339	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
182373	chr5	60699401	60700530	+	0	NA	intron (NM_001145208, intron 1 of 9)	CpG	201	NM_001145208	55789		NM_018369	ENSG00000035499	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
172609	chr4	2505321	2505900	+	0	NA	intron (NM_001185009, intron 5 of 8)	AluY|SINE|Alu	-29765	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
85326	chr16	50063751	50064400	+	0	NA	Intergenic	AluSx|SINE|Alu	-1895	NM_001329731	55027		NM_017939	ENSG00000155393	HEATR3	DBA21|SYO1	HEAT repeat containing 3	protein-coding
14344	chr1	143977371	143977930	+	0	NA	intron (NR_120535, intron 2 of 7)	L2a|LINE|L2	-4131	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
224265	chr9	6049821	6050130	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-34351	NM_001243203	26953		NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
20492	chr1	198645501	198646030	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	6725	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
199415	chr6	116665851	116666150	+	0	NA	intron (NM_001361191, intron 1 of 8)	L1MD|LINE|L1	2766	NM_145062	221302		NM_145062	ENSG00000153975	ZUP1	C6orf113|DUB|ZUFSP	zinc finger containing ubiquitin peptidase 1	protein-coding
204828	chr7	5696921	5698800	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	14050	NR_106934	102466203		NR_106934	ENSG00000283419	MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
57446	chr12	121908971	121909480	+	0	NA	intron (NR_048555, intron 3 of 4)	intron (NR_048555, intron 3 of 4)	-9367	NM_144668	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
120639	chr19	45069771	45069930	+	0	NA	intron (NM_001278439, intron 17 of 19)	intron (NM_001278439, intron 17 of 19)	-5777	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
213833	chr7	141669771	141669950	+	0	NA	intron (NM_001080392, intron 4 of 8).2	AluYe5|SINE|Alu	32306	NM_001080392	57189		NM_001080392	ENSG00000257093	DENND11	KIAA1147|LCHN|PRO2561	DENN domain containing 11	protein-coding
56243	chr12	111971801	111972300	+	0	NA	intron (NM_001294314, intron 5 of 12)	AluJr4|SINE|Alu	41115	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
167472	chr3	129118601	129119410	+	0	NA	intron (NM_001204890, intron 11 of 12)	L1ME1|LINE|L1	2799	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
106526	chr18	21109301	21109780	+	0	NA	intron (NM_005406, intron 1 of 32)	intron (NM_005406, intron 1 of 32)	2273	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
45619	chr11	118913301	118913900	+	0	NA	intron (NM_001378213, intron 2 of 9)	intron (NM_001378213, intron 2 of 9)	2892	NR_039713	100616376		NR_039713	ENSG00000264211	MIR4492	mir-4492	microRNA 4492	ncRNA
41611	chr11	66411901	66412630	+	0	NA	Intergenic	Intergenic	-8739	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
35687	chr11	1892401	1892600	+	0	NA	TTS (NM_002339)	TTS (NM_002339)	-4259	NR_120534	101927624		NR_120534		LINC01150	2G7|TCONS_00019134	long intergenic non-protein coding RNA 1150	ncRNA
221800	chr8	127978901	127979100	+	0	NA	intron (NR_003367, intron 3 of 8)	intron (NR_003367, intron 3 of 8)	18367	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
148073	chr20	63287701	63288900	+	0	NA	non-coding (NR_104023, exon 4 of 4)	non-coding (NR_104023, exon 4 of 4)	1492	NR_036220	100422945		NR_036220	ENSG00000266104	MIR4326	mir-4326	microRNA 4326	ncRNA
95054	chr17	32555251	32555350	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	68307	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
172959	chr4	3780571	3780730	+	0	NA	Intergenic	Intergenic	14265	NM_000683	152		NM_000683	ENSG00000184160	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
189257	chr5	172044821	172045280	+	0	NA	intron (NM_005990, intron 18 of 18)	intron (NM_005990, intron 18 of 18)	-38412	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
138132	chr2	202300771	202301380	+	0	NA	intron (NM_015934, intron 13 of 14)	intron (NM_015934, intron 13 of 14)	8024	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
210302	chr7	99461021	99461600	+	0	NA	intron (NM_001003713, intron 1 of 3)	FAM|SINE|Alu	4857	NM_001198879	100526740		NM_001198879	ENSG00000248919	ATP5MF-PTCD1	ATP5J2-PTCD1	ATP5MF-PTCD1 readthrough	protein-coding
146632	chr20	50192001	50194000	+	0	NA	promoter-TSS (NR_125739)	promoter-TSS (NR_125739)	-931	NR_125739	101927559		NR_125739	ENSG00000277449	CEBPB-AS1	-	CEBPB antisense RNA 1	ncRNA
216245	chr8	12219371	12219750	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-25427	NR_148876	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
28118	chr10	43406321	43406680	+	0	NA	intron (NM_001098204, intron 1 of 3)	AluJo|SINE|Alu	1351	NM_001098206	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
131055	chr2	88590971	88591430	+	0	NA	intron (NM_004836, intron 4 of 16)	intron (NM_004836, intron 4 of 16)	33729	NM_001313915	9451		NM_004836	ENSG00000172071	EIF2AK3	PEK|PERK|WRS	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding
155278	chr22	38083371	38083530	+	0	NA	intron (NM_013356, intron 1 of 5)	MIR3|SINE|MIR	734	NM_013356	23539		NM_013356	ENSG00000100156	SLC16A8	MCT3|REMP	solute carrier family 16 member 8	protein-coding
34725	chr10	133648621	133649400	+	0	NA	Intergenic	Intergenic	-22215	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
24579	chr1	245154251	245154880	+	0	NA	promoter-TSS (NM_018012)	promoter-TSS (NM_018012)	-420	NM_018012	55083		NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
142145	chr20	2751741	2753630	+	0	NA	intron (NR_138537, intron 15 of 17)	CpG-17377	47942	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
25546	chr10	7417901	7418280	+	0	NA	Intergenic	L2a|LINE|L2	-6604	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
36448	chr11	5685951	5686380	+	0	NA	Intergenic	Intergenic	-1091	NM_033093	85363		NM_033034	ENSG00000132256	TRIM5	RNF88|TRIM5alpha	tripartite motif containing 5	protein-coding
197785	chr6	87676371	87677000	+	0	NA	intron (NM_018064, intron 3 of 4)	AluSc8|SINE|Alu	25548	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
86189	chr16	57906101	57906730	+	0	NA	intron (NM_001297, intron 25 of 32)	L2b|LINE|L2	64713	NM_001135639	1258		NM_001297	ENSG00000070729	CNGB1	CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45	cyclic nucleotide gated channel subunit beta 1	protein-coding
6789	chr1	30778221	30778830	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-20751	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
90496	chr17	1448821	1449080	+	0	NA	intron (NM_016823, intron 1 of 2)	intron (NM_016823, intron 1 of 2)	7282	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
228798	chr9	111893321	111893780	+	0	NA	Intergenic	Intergenic	-3264	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
37092	chr11	13216601	13216800	+	0	NA	Intergenic	Intergenic	-59952	NM_001351804	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
209124	chr7	75062571	75062730	+	0	NA	intron (NM_148842, intron 5 of 10)	L2a|LINE|L2	11152	NM_030798	81554		NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
118429	chr19	35797621	35797880	+	0	NA	intron (NR_104176, intron 1 of 7)	intron (NR_104176, intron 1 of 7)	159	NR_104176	644050		NR_104176	ENSG00000293484	LINC01529	-	long intergenic non-protein coding RNA 1529	ncRNA
134985	chr2	152689521	152689780	+	0	NA	intron (NM_001365600, intron 5 of 25)	AluSz|SINE|Alu	27811	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
167565	chr3	129402771	129403150	+	0	NA	intron (NM_207307, intron 7 of 8)	intron (NM_207307, intron 7 of 8)	-3521	NR_003111	132241		NR_003111	ENSG00000290993	RPL32P3	-	ribosomal protein L32 pseudogene 3	pseudo
28811	chr10	62238871	62239230	+	0	NA	3' UTR (NM_001282941, exon 5 of 5)	3' UTR (NM_001282941, exon 5 of 5)	29794	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
81555	chr16	9120421	9120700	+	0	NA	3' UTR (NM_014117, exon 4 of 4)	3' UTR (NM_014117, exon 4 of 4)	28916	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
101362	chr17	67221121	67222050	+	0	NA	intron (NM_001330447, intron 3 of 32)	MIR|SINE|MIR	-23191	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
3714	chr1	16611871	16612100	+	0	NA	intron (NM_017940, intron 1 of 28)	intron (NM_017940, intron 1 of 28)	1579	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
113203	chr19	8448451	8448550	+	0	NA	intron (NM_031203, intron 1 of 16)	AluY|SINE|Alu	3525	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
160835	chr3	33064821	33065450	+	0	NA	intron (NM_000404, intron 5 of 15)	MIR3|SINE|MIR	31697	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
103815	chr17	79097151	79097930	+	0	NA	intron (NM_001082575, intron 10 of 14)	CpG-11757	22716	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
146555	chr20	49991071	49991230	+	0	NA	Intergenic	L2c|LINE|L2	8170	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
191137	chr6	4133171	4133330	+	0	NA	intron (NM_206836, intron 2 of 9)	L1MC5a|LINE|L1	2218	NM_001166010	10455		NM_006117	ENSG00000198721	ECI2	ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3	enoyl-CoA delta isomerase 2	protein-coding
236340	chrX	69989171	69989330	+	0	NA	intron (NM_001399, intron 2 of 7)	L1MDb|LINE|L1	-33607	NR_037494	100500887		NR_037494	ENSG00000211991	MIR676	hsa-mir-676|mir-676	microRNA 676	ncRNA
137470	chr2	197070701	197070900	+	0	NA	intron (NR_160034, intron 16 of 28)	L1MD|LINE|L1	-127191	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
121230	chr19	46637301	46637500	+	0	NA	Intergenic	Intergenic	-2718	NM_033258	94235		NM_033258	ENSG00000167414	GNG8	HG3E	G protein subunit gamma 8	protein-coding
18710	chr1	167447461	167449300	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	70149	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
148346	chr20	63830421	63831450	+	0	NA	intron (NM_001369741, intron 1 of 4)	CpG	329	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
236875	chrX	81201651	81202750	+	0	NA	promoter-TSS (NM_003022)	promoter-TSS (NM_003022)	98	NM_003022	6451		NM_003022	ENSG00000131171	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate rich protein like	protein-coding
86387	chr16	66607121	66607380	+	0	NA	intron (NM_144601, intron 2 of 5)	intron (NM_144601, intron 2 of 5)	2519	NR_037619	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
72958	chr15	40470671	40472550	+	0	NA	exon (NM_130468, exon 1 of 1)	exon (NM_130468, exon 1 of 1)	626	NM_130468	113189		NM_130468	ENSG00000169105	CHST14	ATCS|D4ST1|EDSMC1|HNK1ST	carbohydrate sulfotransferase 14	protein-coding
66805	chr14	64726521	64727250	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	22461	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
66491	chr14	61668171	61668530	+	0	NA	Intergenic	Intergenic	-27163	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
109176	chr19	341821	342430	+	0	NA	intron (NM_017550, intron 1 of 13)	intron (NM_017550, intron 1 of 13)	2716	NM_001346105	54531		NM_017550	ENSG00000105556	MIER2	KIAA1193|Mi-er2	MIER family member 2	protein-coding
77613	chr15	85378351	85378650	+	0	NA	Intergenic	AluJb|SINE|Alu	-2096	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
41040	chr11	65453001	65453600	+	0	NA	Intergenic	Intergenic	-1986	NR_160548	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
2065	chr1	7926171	7926330	+	0	NA	intron (NM_001561, intron 7 of 7)	Tigger3c|DNA|TcMar-Tigger	14589	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
162765	chr3	49068151	49068650	+	0	NA	intron (NM_001320580, intron 3 of 10)	AluJb|SINE|Alu	25232	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
209670	chr7	79911421	79911680	+	0	NA	Intergenic	Intergenic	-223281	NM_002069	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
174735	chr4	43343551	43343680	+	0	NA	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	148928	NR_146993	105374436		NR_146993	ENSG00000248143	LINC02383	-	long intergenic non-protein coding RNA 2383	ncRNA
167	chr1	609051	610100	+	0	NA	Intergenic	CpG	19434	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
194306	chr6	32814271	32814430	+	0	NA	exon (NM_002120, exon 3 of 6)	exon (NM_002120, exon 3 of 6)	2652	NM_002120	3112		NM_002120	ENSG00000241106	HLA-DOB	DOB|HLA_DOB	major histocompatibility complex, class II, DO beta	protein-coding
173255	chr4	7034701	7035330	+	0	NA	intron (NR_033828, intron 3 of 3)	intron (NR_033828, intron 3 of 3)	7986	NM_153376	257236		NM_153376	ENSG00000173013	CFAP184	CCDC96	cilia and flagella associated protein 184	protein-coding
36626	chr11	7512921	7514780	+	0	NA	promoter-TSS (NR_147792)	promoter-TSS (NR_147792)	-149	NM_001351854	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
11913	chr1	93353121	93353830	+	0	NA	intron (NM_001938, intron 1 of 2)	intron (NM_001938, intron 1 of 2)	7568	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
182046	chr5	55903151	55904250	+	0	NA	intron (NM_001297572, intron 8 of 10)	intron (NM_001297572, intron 8 of 10)	50378	NM_001242639	133396		NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R|zcytoR17	interleukin 31 receptor A	protein-coding
192585	chr6	25960951	25961050	+	0	NA	Intergenic	MER41B|LTR|ERV1	-1802	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
152177	chr22	20091481	20092150	+	0	NA	intron (NM_022720, intron 6 of 13)	intron (NM_022720, intron 6 of 13)	5757	NR_031706	100302197		NR_031706	ENSG00000284464	MIR1306	MIRN1306|hsa-mir-1306|mir-1306	microRNA 1306	ncRNA
217857	chr8	37802301	37802900	+	0	NA	intron (NM_032777, intron 1 of 18)	intron (NM_032777, intron 1 of 18)	5717	NM_032777	25960		NM_032777	ENSG00000020181	ADGRA2	GPR124|TEM5	adhesion G protein-coupled receptor A2	protein-coding
124631	chr2	1742971	1743130	+	0	NA	intron (NM_012293, intron 1 of 22)	intron (NM_012293, intron 1 of 22)	1465	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
185132	chr5	119301771	119301930	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	-31325	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
46644	chr11	128690701	128691200	+	0	NA	TTS (NR_038908)	TTS (NR_038908)	-2966	NM_001167681	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
57628	chr12	122506051	122506150	+	0	NA	intron (NR_036436, intron 9 of 9)	intron (NR_036436, intron 9 of 9)	-5168	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
16596	chr1	155048751	155049050	+	0	NA	intron (NM_152494, intron 16 of 16)	MIR3|SINE|MIR	2265	NR_040772	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
70874	chr14	103819271	103819430	+	0	NA	intron (NM_015316, intron 1 of 16)	L2a|LINE|L2	28225	NM_015316	23368		NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
121384	chr19	46905221	46905730	+	0	NA	intron (NM_004491, intron 1 of 6)	AluSg4|SINE|Alu	44478	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
165868	chr3	106032201	106032400	+	0	NA	Intergenic	L2|LINE|L2	-162899	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
226618	chr9	73173401	73173800	+	0	NA	Intergenic	L1MC2|LINE|L1	21735	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
203583	chr7	918471	918630	+	0	NA	intron (NM_006869, intron 4 of 10)	intron (NM_006869, intron 4 of 10)	2339	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
42925	chr11	73397451	73398450	+	0	NA	TTS (NM_032871)	TTS (NM_032871)	21282	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
114934	chr19	13970801	13971800	+	0	NA	intron (NM_002918, intron 9 of 20)	AluSq2|SINE|Alu	-17908	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
140176	chr2	231658471	231658630	+	0	NA	Intergenic	Intergenic	-49975	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
54358	chr12	89701721	89702230	+	0	NA	intron (NM_001366520, intron 1 of 21)	MER91C|DNA|hAT-Tip100	6863	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
190948	chr6	2902411	2903830	+	0	NA	intron (NM_004155, intron 1 of 6)	CpG	189	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
19084	chr1	170689571	170689750	+	0	NA	intron (NM_022716, intron 1 of 3)	intron (NM_022716, intron 1 of 3)	25529	NM_006902	5396		NM_006902	ENSG00000116132	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
206574	chr7	35684871	35686080	+	0	NA	intron (NM_022373, intron 2 of 8)	AluSx|SINE|Alu	9660	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
23511	chr1	228794101	228794880	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	59011	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
226485	chr9	71757801	71758150	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	10538	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
157079	chr22	42609071	42611250	+	0	NA	intron (NM_001278657, intron 1 of 8)	AluSq2|SINE|Alu	4723	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
128314	chr2	54653601	54654480	+	0	NA	intron (NM_178313, intron 26 of 30)	intron (NM_178313, intron 26 of 30)	-70972	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133514	chr2	120109851	120110050	+	0	NA	intron (NM_020909, intron 16 of 24)	Zaphod2|DNA|hAT-Tip100	96873	NM_001330307	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
168130	chr3	138923121	138923780	+	0	NA	Intergenic	Intergenic	20570	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
127880	chr2	45993271	45993830	+	0	NA	intron (NM_005400, intron 6 of 14)	intron (NM_005400, intron 6 of 14)	-303857	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
179926	chr5	757651	757750	+	0	NA	intron (NM_001351303, intron 4 of 13)	intron (NM_001351303, intron 4 of 13)	27029	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
128087	chr2	47896351	47896680	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluJb|SINE|Alu	-7796	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
80454	chr16	2677471	2678250	+	0	NA	Intergenic	Intergenic	-4421	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
138964	chr2	218266571	218267030	+	0	NA	intron (NM_001302545, intron 4 of 10)	intron (NM_001302545, intron 4 of 10)	3337	NM_001087	14		NM_001087	ENSG00000127837	AAMP	-	angio associated migratory cell protein	protein-coding
178236	chr4	143189921	143190200	+	0	NA	intron (NM_032557, intron 2 of 9)	intron (NM_032557, intron 2 of 9)	5143	NM_032557	84640		NM_032557	ENSG00000170185	USP38	HP43.8KD	ubiquitin specific peptidase 38	protein-coding
201963	chr6	152170671	152171900	+	0	NA	intron (NM_033071, intron 129 of 145)	intron (NM_033071, intron 129 of 145)	-2998	NM_001347702	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
134492	chr2	143283901	143284480	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	154771	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
43508	chr11	78683301	78683500	+	0	NA	intron (NM_001098816, intron 29 of 33)	L1HS|LINE|L1	-108536	NM_001243251	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
42717	chr11	72682501	72683100	+	0	NA	Intergenic	Intergenic	-8378	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
90285	chr17	1010421	1010680	+	0	NA	intron (NM_001282149, intron 15 of 17).3	intron (NM_001282149, intron 15 of 17).3	12009	NR_036148	100422835		NR_036148	ENSG00000264429	MIR3183	mir-3183	microRNA 3183	ncRNA
32789	chr10	104980421	104980680	+	0	NA	intron (NM_014978, intron 4 of 26)	intron (NM_014978, intron 4 of 26)	-314334	NR_104028	100505890		NR_104028	ENSG00000226387	SORCS3-AS1	-	SORCS3 antisense RNA 1	ncRNA
51882	chr12	53502951	53503350	+	0	NA	intron (NM_134323, intron 3 of 8)	intron (NM_134323, intron 3 of 8)	1564	NM_134324	6895		NM_004178	ENSG00000139546	TARBP2	LOQS|TRBP|TRBP1|TRBP2	TARBP2 subunit of RISC loading complex	protein-coding
165896	chr3	106290651	106290830	+	0	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	-421339	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
34652	chr10	133331021	133331280	+	0	NA	intron (NM_015722, intron 1 of 5)	L1M5|LINE|L1	5746	NM_015722	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
228330	chr9	98774771	98775130	+	0	NA	intron (NM_173551, intron 8 of 14)	intron (NM_173551, intron 8 of 14)	21605	NM_173551	203286		NM_173551	ENSG00000165138	ANKS6	ANKRD14|NPHP16|PKDR1|SAMD6	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding
233530	chrX	99371	99530	+	0	NA	Intergenic	Intergenic	-176906	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
121017	chr19	45792051	45794050	+	0	NA	promoter-TSS (NM_004943)	promoter-TSS (NM_004943)	-205	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
157373	chr22	44709451	44710200	+	0	NA	intron (NM_181334, intron 1 of 14)	AluSg|SINE|Alu	7621	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
97221	chr17	42785051	42785850	+	0	NA	exon (NM_001321299, exon 5 of 18)	exon (NM_001321299, exon 5 of 18)	4840	NM_032387	65266		NM_032387	ENSG00000126562	WNK4	PHA2B|PRKWNK4	WNK lysine deficient protein kinase 4	protein-coding
114078	chr19	11101371	11101700	+	0	NA	intron (NM_001195799, intron 2 of 16)	AluY|SINE|Alu	-11876	NR_163945	115271120		NR_163945		LDLR-AS1	-	LDLR antisense RNA 1	ncRNA
80232	chr16	2191521	2192000	+	0	NA	intron (NM_020764, intron 1 of 19)	L2b|LINE|L2	4845	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
222261	chr8	133281571	133281930	+	0	NA	intron (NM_001374847, intron 1 of 14)	intron (NM_001374847, intron 1 of 14)	14940	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
208262	chr7	65749521	65749780	+	0	NA	intron (NR_038378, intron 2 of 7)	AluJo|SINE|Alu	1274	NR_103527	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
108551	chr18	74616871	74617030	+	0	NA	intron (NM_001384475, intron 1 of 8)	intron (NM_001384475, intron 1 of 8)	12753	NM_001384475	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
214910	chr7	151458721	151458980	+	0	NA	Intergenic	AluY|SINE|Alu	-18037	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
122552	chr19	49653271	49653430	+	0	NA	exon (NM_021228, exon 7 of 11)	exon (NM_021228, exon 7 of 11)	11141	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
37322	chr11	14793851	14794150	+	0	NA	intron (NM_001363569, intron 4 of 15)	intron (NM_001363569, intron 4 of 15)	97671	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
54196	chr12	79849351	79849650	+	0	NA	intron (NM_001143885, intron 3 of 25)	Helitron3Na_Mam|RC|Helitron	64411	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
218050	chr8	38827621	38828380	+	0	NA	non-coding (NR_148050, exon 5 of 5)	non-coding (NR_148050, exon 5 of 5)	22550	NM_001352802	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
174869	chr4	48728851	48730000	+	0	NA	intron (NM_015030, intron 1 of 63)	L1PA7|LINE|L1	50854	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
199293	chr6	111991451	111992230	+	0	NA	Intergenic	Intergenic	-62264	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
221214	chr8	120857101	120857740	+	0	NA	Intergenic	Intergenic	-45374	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
83665	chr16	28359501	28360000	+	0	NA	intron (NM_001282524, intron 1 of 6)	intron (NM_001282524, intron 1 of 6)	3110	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
84815	chr16	31079351	31079780	+	0	NA	exon (NM_014699, exon 2 of 3)	exon (NM_014699, exon 2 of 3)	5143	NM_014699	9726		NM_014699	ENSG00000167395	ZNF646	-	zinc finger protein 646	protein-coding
162839	chr3	49280251	49280550	+	0	NA	intron (NM_199443, intron 19 of 20)	AluY|SINE|Alu	-3168	NM_198562	375341		NM_198562	ENSG00000188315	C3orf62	MAPS	chromosome 3 open reading frame 62	protein-coding
154140	chr22	31246071	31246530	+	0	NA	intron (NM_005569, intron 2 of 15)	AluJb|SINE|Alu	-2084	NM_016733	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
177816	chr4	123535421	123536100	+	0	NA	Intergenic	L1MA9|LINE|L1	-114231	NR_027105	285419		NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
85096	chr16	33339021	33339330	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-8834	NR_158162	105369266		NR_158162		LOC105369266	-	uncharacterized LOC105369266	ncRNA
132981	chr2	111492801	111494200	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	1661	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
63030	chr13	112928871	112929030	+	0	NA	Intergenic	Intergenic	39688	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
124709	chr2	3590601	3591480	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3792	NM_001255983	78989		NM_024027	ENSG00000118004	COLEC11	3MC2|CL-11|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
177531	chr4	118682871	118683230	+	0	NA	intron (NR_125930, intron 2 of 6)	intron (NR_125930, intron 2 of 6)	2291	NR_125930	101929741		NR_125930	ENSG00000281731	METTL14-DT	-	METTL14 divergent transcript	ncRNA
198101	chr6	90291001	90291200	+	0	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	5743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
190660	chr5	181248151	181248530	+	0	NA	intron (NR_109909, intron 2 of 2)	intron (NR_109909, intron 2 of 2)	1799	NR_109909	101928649		NR_109909	ENSG00000233937	CTC-338M12.4	-	uncharacterized LOC101928649	ncRNA
129538	chr2	69754601	69755000	+	0	NA	intron (NM_001320702, intron 1 of 12)	intron (NM_001320702, intron 1 of 12)	12666	NM_001320700	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
160769	chr3	32690371	32690530	+	0	NA	intron (NR_046352, intron 1 of 16)	AluJo|SINE|Alu	-5091	NM_001256742	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
176188	chr4	83454551	83456800	+	0	NA	promoter-TSS (NM_016067)	promoter-TSS (NM_016067)	148	NM_001297759	113510		NM_133636	ENSG00000163312	HELQ	HEL308	helicase, POLQ like	protein-coding
65636	chr14	52310371	52310850	+	0	NA	Intergenic	Intergenic	-3702	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
228284	chr9	98081171	98081750	+	0	NA	intron (NM_018946, intron 5 of 5)	intron (NM_018946, intron 5 of 5)	24728	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
107256	chr18	41972421	41972980	+	0	NA	intron (NM_002647, intron 4 of 24)	intron (NM_002647, intron 4 of 24)	17466	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
165437	chr3	98537771	98538050	+	0	NA	Intergenic	AluYm1|SINE|Alu	5932	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
83690	chr16	28423971	28424500	+	0	NA	intron (NM_001199142, intron 1 of 21)	AluY|SINE|Alu	2219	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
49412	chr12	22629971	22630130	+	0	NA	intron (NM_001039481, intron 1 of 2)	intron (NM_001039481, intron 1 of 2)	4879	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
144141	chr20	34023671	34024280	+	0	NA	intron (NM_016732, intron 1 of 9)	AluSx|SINE|Alu	-25144	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
190589	chr5	181098671	181100030	+	0	NA	Intergenic	Intergenic	25954	NM_001258283	26693		NM_001258283	ENSG00000185372	OR2V1	OR2V1P|OST265	olfactory receptor family 2 subfamily V member 1	protein-coding
205721	chr7	23473751	23474780	+	0	NA	Intergenic	CpG	-3774	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
26905	chr10	26447191	26447750	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	9129	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
170367	chr3	184608101	184609050	+	0	NA	Intergenic	Intergenic	46790	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
31189	chr10	91201251	91202780	+	0	NA	intron (NM_001257101, intron 1 of 9)	MIR|SINE|MIR	-18136	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
41117	chr11	65555671	65556250	+	0	NA	intron (NM_001164266, intron 1 of 26)	intron (NM_001164266, intron 1 of 26)	2268	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
12600	chr1	109041001	109043100	+	0	NA	promoter-TSS (NM_001142551)	promoter-TSS (NM_001142551)	52	NM_001142551	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
35181	chr11	786101	786300	+	0	NA	TTS (NM_016564)	TTS (NM_016564)	3890	NM_016564	51286		NM_016564	ENSG00000184524	CEND1	BM88	cell cycle exit and neuronal differentiation 1	protein-coding
192053	chr6	16517921	16518480	+	0	NA	intron (NM_000332, intron 6 of 8)	intron (NM_000332, intron 6 of 8)	241984	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
143074	chr20	21522221	21522700	+	0	NA	Intergenic	CpG	-8396	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
220212	chr8	96163371	96164630	+	0	NA	Intergenic	Intergenic	-3194	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
72812	chr15	40102421	40102880	+	0	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	3436	NM_001003942	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
190355	chr5	179701751	179702650	+	0	NA	intron (NM_001363993, intron 2 of 15)	AluJo|SINE|Alu	3233	NM_001746	821		NM_001746	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
139946	chr2	230840451	230840750	+	0	NA	Intergenic	Intergenic	-23585	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
24065	chr1	235312271	235312430	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-14866	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
74398	chr15	58925901	58926100	+	0	NA	intron (NR_135043, intron 1 of 18)	intron (NR_135043, intron 1 of 18)	7679	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
223698	chr8	144432051	144432300	+	0	NA	intron (NM_013432, intron 23 of 25)	intron (NM_013432, intron 23 of 25)	-2993	NR_109770	100287098		NR_109770		TONSL-AS1	-	TONSL antisense RNA 1	ncRNA
220983	chr8	115430271	115430730	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	237513	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
218834	chr8	59264001	59264400	+	0	NA	Intergenic	Intergenic	144990	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
146083	chr20	47541121	47541500	+	0	NA	intron (NM_181659, intron 1 of 22)	intron (NM_181659, intron 1 of 22)	39423	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
155136	chr22	37646451	37646750	+	0	NA	intron (NM_018957, intron 10 of 17)	intron (NM_018957, intron 10 of 17)	6931	NM_001350055	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
33324	chr10	115093971	115094130	+	0	NA	intron (NM_001276282, intron 1 of 7)	CpG	685	NM_207303	26033		NM_207303	ENSG00000107518	ATRNL1	ALP|bA338L11.1|bA454H24.1	attractin like 1	protein-coding
204104	chr7	2160121	2160400	+	0	NA	intron (NM_001304524, intron 8 of 16)	AluJb|SINE|Alu	-71208	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
78149	chr15	90406901	90407250	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	18833	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
237503	chrX	119990901	119991550	+	0	NA	Intergenic	CpG	24326	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
35888	chr11	2402471	2402950	+	0	NA	exon (NM_005706, exon 3 of 3)	exon (NM_005706, exon 3 of 3)	1960	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
61907	chr13	77477851	77478720	+	0	NA	Intergenic	Intergenic	-57389	NM_001160706	8796		NM_003843	ENSG00000136155	SCEL	-	sciellin	protein-coding
81448	chr16	8878001	8878630	+	0	NA	Intergenic	Intergenic	-9303	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
26229	chr10	14589771	14590250	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	14391	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
98246	chr17	46169551	46169850	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	23082	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
24090	chr1	235367121	235368650	+	0	NA	intron (NM_001079515, intron 1 of 16).2	intron (NM_001079515, intron 1 of 16).2	458	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
157097	chr22	42628971	42629850	+	0	NA	intron (NM_001129819, intron 4 of 8)	L2b|LINE|L2	11191	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
122756	chr19	50117571	50118080	+	0	NA	promoter-TSS (NR_024214).8	promoter-TSS (NR_024214).8	15	NR_024228	100169958		NR_024228		SNAR-A8	-	small NF90 (ILF3) associated RNA A8	snRNA
117017	chr19	18914471	18914630	+	0	NA	intron (NM_007263, intron 1 of 9)	AluSx1|SINE|Alu	4837	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
136594	chr2	178413151	178414300	+	0	NA	promoter-TSS (NR_110206)	promoter-TSS (NR_110206)	66	NR_110204	101927027		NR_110204	ENSG00000223960	CHROMR	CHROME|PRKRA-AS1	cholesterol induced regulator of metabolism RNA	ncRNA
141406	chr2	240915701	240916130	+	0	NA	intron (NM_001351305, intron 1 of 31)	intron (NM_001351305, intron 1 of 31)	9579	NM_001351305	728763		NM_001351305	ENSG00000226321	CROCC2	-	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding
156203	chr22	40308471	40308780	+	0	NA	exon (NM_001162501, exon 16 of 23)	exon (NM_001162501, exon 16 of 23)	-37875	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
62453	chr13	99350301	99351080	+	0	NA	promoter-TSS (NR_024013)	promoter-TSS (NR_024013)	-730	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
185513	chr5	131325771	131326430	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1MD|LINE|L1	62047	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
58509	chr12	132177071	132177430	+	0	NA	Intergenic	Intergenic	12445	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
152042	chr22	19505421	19505930	+	0	NA	intron (NR_161281, intron 10 of 16)	intron (NR_161281, intron 10 of 16)	18735	NM_001363066	7122		NM_003277	ENSG00000184113	CLDN5	AWAL|BEC1|CPETRL1|TMDVCF|TMVCF	claudin 5	protein-coding
106895	chr18	24514321	24514630	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	53838	NM_021624	59340		NM_021624	ENSG00000134489	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
217214	chr8	26437771	26438330	+	0	NA	Intergenic	L1MB3|LINE|L1	47637	NM_001330491	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
191028	chr6	3153771	3154200	+	0	NA	TTS (NM_001302777)	TTS (NM_001302777)	3559	NM_001310315	7280		NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
47660	chr12	6322151	6322250	+	0	NA	intron (NR_169277, intron 14 of 16)	intron (NR_169277, intron 14 of 16)	9067	NM_001144857	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
43346	chr11	76666051	76666350	+	0	NA	intron (NM_001370191, intron 1 of 2)	intron (NM_001370191, intron 1 of 2)	3738	NM_001370189	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
207490	chr7	44710701	44711100	+	0	NA	Intergenic	Intergenic	-37666	NM_001300959	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
1430	chr1	2589451	2589550	+	0	NA	non-coding (NR_036637, exon 7 of 7).2	non-coding (NR_036637, exon 7 of 7).2	2723	NM_001195741	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
20965	chr1	202380051	202380580	+	0	NA	intron (NM_001167857, intron 1 of 9)	intron (NM_001167857, intron 1 of 9)	31613	NM_001167857	4660		NM_002481	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1 regulatory subunit 12B	protein-coding
181508	chr5	43022271	43022430	+	0	NA	intron (NR_104651, intron 2 of 2)	AluY|SINE|Alu	-2707	NR_104650	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
210781	chr7	100724871	100726030	+	0	NA	Intergenic	Intergenic	4982	NM_000799	2056		NM_000799	ENSG00000130427	EPO	DBAL|ECYT5|EP|MVCD2	erythropoietin	protein-coding
2993	chr1	12021951	12022330	+	0	NA	exon (NM_021933, exon 3 of 10)	exon (NM_021933, exon 3 of 10)	2642	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
76122	chr15	72519371	72519700	+	0	NA	intron (NM_005744, intron 2 of 13)	AluSp|SINE|Alu	45205	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
207761	chr7	50142151	50142880	+	0	NA	intron (NM_001161834, intron 7 of 8)	intron (NM_001161834, intron 7 of 8)	46632	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
13745	chr1	116911651	116911950	+	0	NA	intron (NM_020440, intron 1 of 8)	AluJr|SINE|Alu	1884	NM_020440	5738		NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
139690	chr2	227406321	227407180	+	0	NA	Intergenic	Intergenic	-27444	NM_024795	79853		NM_024795	ENSG00000168955	TM4SF20	PRO994|SLI5|TCCE518	transmembrane 4 L six family member 20	protein-coding
203055	chr6	166221101	166221330	+	0	NA	Intergenic	Intergenic	-15754	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
52998	chr12	57510371	57511000	+	0	NA	intron (NM_004990, intron 11 of 20)	AluJo|SINE|Alu	-2003	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
239196	chrY	12910651	12911430	+	0	NA	intron (NR_136719, intron 3 of 13)	AluY|SINE|Alu	5335	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
112119	chr19	5596021	5596800	+	0	NA	intron (NM_014649, intron 13 of 20)	AluJb|SINE|Alu	26366	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
152199	chr22	20115771	20115930	+	0	NA	promoter-TSS (NM_001278639)	promoter-TSS (NM_001278639)	-254	NM_001278639	5902		NM_002882	ENSG00000099901	RANBP1	HTF9A	RAN binding protein 1	protein-coding
28242	chr10	45556901	45557100	+	0	NA	intron (NM_145021, intron 1 of 6)	L1MB2|LINE|L1	-21629	NM_001002266	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
47695	chr12	6423121	6424150	+	0	NA	Intergenic	Intergenic	-21320	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
165341	chr3	88113451	88113830	+	0	NA	intron (NM_001350135, intron 3 of 6)	intron (NM_001350135, intron 3 of 6)	36226	NM_001195308	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
209808	chr7	87886621	87887480	+	0	NA	intron (NM_001318060, intron 4 of 10)	intron (NM_001318060, intron 4 of 10)	10557	NM_006716	10926		NM_006716	ENSG00000006634	DBF4	ASK|CHIF|DBF4A|ZDBF1	DBF4-CDC7 kinase regulatory subunit	protein-coding
20990	chr1	202661251	202661430	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	-17887	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
130263	chr2	84862451	84862750	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	18484	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
6983	chr1	31806601	31806800	+	0	NA	intron (NM_001281988, intron 1 of 14)	AluSx3|SINE|Alu	9351	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
169918	chr3	177787351	177787850	+	0	NA	Intergenic	Mam_R4|LINE|Dong-R4	-29265	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
117230	chr19	19420311	19421930	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	-13943	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
149364	chr21	29315121	29315380	+	0	NA	intron (NR_027655, intron 1 of 7)	intron (NR_027655, intron 1 of 7)	10046	NR_027655	571		NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding
16981	chr1	155968801	155969000	+	0	NA	intron (NM_004723, intron 2 of 21)	intron (NM_004723, intron 2 of 21)	9275	NM_001350111	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
48607	chr12	10358721	10359680	+	0	NA	Intergenic	L1MEg2|LINE|L1	-4569	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
151708	chr22	17626001	17626400	+	0	NA	intron (NM_001696, intron 1 of 8)	AluY|SINE|Alu	2549	NM_001696	529		NM_001696	ENSG00000131100	ATP6V1E1	ARCL2C|ATP6E|ATP6E2|ATP6V1E|P31|Vma4	ATPase H+ transporting V1 subunit E1	protein-coding
33968	chr10	124648601	124649500	+	0	NA	intron (NM_014661, intron 4 of 4)	MIR3|SINE|MIR	-54978	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
42209	chr11	68026601	68027200	+	0	NA	intron (NM_001030010, intron 8 of 8)	(GCCCCA)n|Simple_repeat|Simple_repeat	-3781	NM_002496	4728		NM_002496	ENSG00000110717	NDUFS8	CI-23k|CI23KD|MC1DN2|TYKY	NADH:ubiquinone oxidoreductase core subunit S8	protein-coding
120382	chr19	43652301	43652650	+	0	NA	intron (NM_001005377, intron 4 of 5)	intron (NM_001005377, intron 4 of 5)	-12625	NM_145296	199731		NM_145296	ENSG00000105767	CADM4	IGSF4C|NECL4|Necl-4|TSLL2|synCAM4	cell adhesion molecule 4	protein-coding
204565	chr7	5191501	5191830	+	0	NA	intron (NM_001033519, intron 1 of 11)	intron (NM_001033519, intron 1 of 11)	1432	NM_001033519	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
60890	chr13	46149321	46149580	+	0	NA	intron (NM_002298, intron 8 of 15)	intron (NM_002298, intron 8 of 15)	32727	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
39032	chr11	47763401	47763980	+	0	NA	intron (NM_015308, intron 2 of 16)	AluY|SINE|Alu	3651	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
61336	chr13	50611171	50611530	+	0	NA	Intergenic	Intergenic	-83901	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
225141	chr9	33721071	33721230	+	0	NA	Intergenic	Intergenic	17266	NR_109755	101929688		NR_109755	ENSG00000235481	UBE2R2-AS1	LINC01251	UBE2R2 antisense RNA 1	ncRNA
152924	chr22	22787471	22788730	+	0	NA	Intergenic	Intergenic	-34676	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
126226	chr2	27016701	27017180	+	0	NA	intron (NM_001303050, intron 1 of 6)	intron (NM_001303050, intron 1 of 6)	2186	NM_001303050	22924		NM_012326	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule associated protein RP/EB family member 3	protein-coding
239168	chrY	12303501	12304080	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	117800	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
93711	chr17	19503701	19504300	+	0	NA	Intergenic	Intergenic	-29854	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
115793	chr19	16373721	16374180	+	0	NA	intron (NR_047665, intron 21 of 22)	intron (NR_047665, intron 21 of 22)	49124	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
155713	chr22	39115751	39116480	+	0	NA	Intergenic	MER4E1|LTR|ERV1	18871	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
189200	chr5	171429001	171429200	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	9453	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
8395	chr1	40391271	40392280	+	0	NA	intron (NM_001198978, intron 1 of 9)	intron (NM_001198978, intron 1 of 9)	-1570	NM_001198979	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
150195	chr21	39345451	39346200	+	0	NA	intron (NM_004965, intron 4 of 5)	intron (NM_004965, intron 4 of 5)	3263	NM_004965	3150		NM_004965	ENSG00000205581	HMGN1	HMG14	high mobility group nucleosome binding domain 1	protein-coding
110115	chr19	1565671	1566280	+	0	NA	intron (NM_203304, intron 1 of 1)	intron (NM_203304, intron 1 of 1)	2083	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
60865	chr13	45809971	45810130	+	0	NA	intron (NM_198849, intron 1 of 1)	intron (NM_198849, intron 1 of 1)	41703	NM_198849	283514		NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
204472	chr7	4724601	4725780	+	0	NA	intron (NM_001037165, intron 1 of 8)	CpG	42895	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
118810	chr19	38513521	38514200	+	0	NA	intron (NM_000540, intron 63 of 105)	L1MC4|LINE|L1	80169	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
100364	chr17	60034371	60034930	+	0	NA	Intergenic	Intergenic	8455	NR_039890	100616210		NR_039890	ENSG00000264049	MIR4737	-	microRNA 4737	ncRNA
158890	chr3	9913821	9914080	+	0	NA	intron (NM_153480, intron 12 of 15)	intron (NM_153480, intron 12 of 15)	-3124	NM_001203264	84818		NM_032732	ENSG00000163702	IL17RC	CANDF9|IL17-RL|IL17RL	interleukin 17 receptor C	protein-coding
117384	chr19	19593451	19593930	+	0	NA	intron (NM_025245, intron 2 of 7)	intron (NM_025245, intron 2 of 7)	24997	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
16792	chr1	155543521	155544230	+	0	NA	intron (NM_018489, intron 1 of 27)	AluJb|SINE|Alu	-18167	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
17269	chr1	156391971	156392280	+	0	NA	Intergenic	Intergenic	22914	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
74156	chr15	55276371	55276630	+	0	NA	intron (NM_183235, intron 1 of 6)	AluJr|SINE|Alu	-5578	NM_183236	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
21807	chr1	207245251	207245350	+	0	NA	Intergenic	Intergenic	-76378	NM_001300903	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
167828	chr3	133659371	133659750	+	0	NA	intron (NM_007027, intron 2 of 27)	L2a|LINE|L2	2381	NM_007027	11073		NM_007027	ENSG00000163781	TOPBP1	Dpb11|TOP2BP1	DNA topoisomerase II binding protein 1	protein-coding
94259	chr17	28691171	28691830	+	0	NA	intron (NM_003170, intron 27 of 36)	AluSx|SINE|Alu	18604	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
221857	chr8	128283771	128284400	+	0	NA	Intergenic	Intergenic	133969	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
125991	chr2	25297901	25298380	+	0	NA	intron (NR_135490, intron 3 of 23)	MIRb|SINE|MIR	30581	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
192359	chr6	24645721	24646880	+	0	NA	promoter-TSS (NM_001350403)	promoter-TSS (NM_001350403)	-109	NM_001350407	9856		NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
223666	chr8	144391651	144391950	+	0	NA	exon (NM_174922, exon 9 of 15)	exon (NM_174922, exon 9 of 15)	2430	NR_030635	100126351		NR_030635	ENSG00000284310	MIR939	MIRN939|hsa-mir-939|mir-939	microRNA 939	ncRNA
208036	chr7	55886251	55886350	+	0	NA	Intergenic	AluJr|SINE|Alu	-1156	NM_001366796	349075		NM_182633	ENSG00000178665	ZNF713	-	zinc finger protein 713	protein-coding
7634	chr1	35564301	35565480	+	0	NA	intron (NM_014284, intron 6 of 6)	intron (NM_014284, intron 6 of 6)	7091	NM_014284	23154		NM_014284	ENSG00000020129	NCDN	NEDIES	neurochondrin	protein-coding
193267	chr6	29963421	29964130	+	0	NA	Intergenic	L1PA7|LINE|L1	-11340	NR_028032	10255		NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9	ncRNA
14383	chr1	144159851	144160980	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	87790	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
123160	chr19	52199151	52199450	+	0	NA	intron (NR_033500, intron 1 of 13)	AluY|SINE|Alu	-1896	NM_001363656	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
143938	chr20	32764251	32764350	+	0	NA	intron (NM_175849, intron 1 of 19)	MIRb|SINE|MIR	1915	NM_006892	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
67763	chr14	73724801	73725000	+	0	NA	intron (NM_001043318, intron 9 of 11)	intron (NM_001043318, intron 9 of 11)	-10516	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
178062	chr4	140049021	140050080	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-78465	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
56284	chr12	112158671	112159180	+	0	NA	Intergenic	L1P3|LINE|L1	4396	NR_106921	102465519		NR_106921	ENSG00000283793	MIR6861	hsa-mir-6861	microRNA 6861	ncRNA
213443	chr7	138664001	138664450	+	0	NA	promoter-TSS (NM_001331192)	promoter-TSS (NM_001331192)	-1	NM_174959	136306		NM_174959	ENSG00000157703	SVOPL	SLC22B5	SVOP like	protein-coding
111880	chr19	4656021	4657130	+	0	NA	TTS (NM_019107)	TTS (NM_019107)	13767	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
162476	chr3	48550451	48550750	+	0	NA	promoter-TSS (NR_106881)	promoter-TSS (NR_106881)	-579	NR_106881	102465494		NR_106881	ENSG00000278799	MIR6823	hsa-mir-6823	microRNA 6823	ncRNA
155614	chr22	38845971	38846130	+	0	NA	Intergenic	AluSx|SINE|Alu	-2022	NM_014293	23467		NM_014293	ENSG00000221890	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
115694	chr19	16200621	16201280	+	0	NA	intron (NM_001130524, intron 1 of 12)	intron (NM_001130524, intron 1 of 12)	3039	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
189081	chr5	170282971	170284050	+	0	NA	intron (NM_005565, intron 3 of 20)	intron (NM_005565, intron 3 of 20)	14267	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
148891	chr21	8460651	8461480	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	19919	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
234864	chrX	25020451	25021230	+	0	NA	Intergenic	CpG	-4875	NM_139058	170302		NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
146389	chr20	49289321	49291030	+	0	NA	TTS (NR_036659)	TTS (NR_036659)	9492	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
211304	chr7	103314751	103315050	+	0	NA	TTS (NM_004279)	TTS (NM_004279)	17465	NM_004279	9512		NM_004279	ENSG00000105819	PMPCB	Beta-MPP|MAS1|MPP11|MPPB|MPPP52|P-52	peptidase, mitochondrial processing subunit beta	protein-coding
170348	chr3	184556401	184557350	+	0	NA	promoter-TSS (NR_046593)	promoter-TSS (NR_046593)	43	NR_046593	100874079		NR_046593	ENSG00000230215	LINC01840	EIF2B5-AS1	long intergenic non-protein coding RNA 1840	ncRNA
221351	chr8	123242351	123242450	+	0	NA	intron (NM_001204180, intron 2 of 5)	MIRb|SINE|MIR	-1023	NM_032847	84933		NM_032847	ENSG00000189376	C8orf76	-	chromosome 8 open reading frame 76	protein-coding
129729	chr2	70905671	70905830	+	0	NA	intron (NM_012476, intron 1 of 2)	intron (NM_012476, intron 1 of 2)	5174	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
46683	chr11	128747621	128748500	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-52037	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
94779	chr17	30969371	30969530	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-1589	NM_197939	84282		NM_032322	ENSG00000181481	RNF135	L13|MMFD|REUL|Riplet	ring finger protein 135	protein-coding
73606	chr15	44556571	44556730	+	0	NA	intron (NM_001284335, intron 5 of 6)	AluSx|SINE|Alu	19503	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
219498	chr8	73960501	73960700	+	0	NA	intron (NM_001204857, intron 1 of 3)	MER77B|LTR|ERVL	11308	NM_001204861	6921		NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
182097	chr5	56036121	56036380	+	0	NA	Intergenic	LTR12C|LTR|ERV1	41083	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
95746	chr17	38596571	38597130	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	9102	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
200133	chr6	130238901	130239180	+	0	NA	intron (NM_001258275, intron 2 of 13)	AluSx1|SINE|Alu	-16089	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
44055	chr11	95228151	95228700	+	0	NA	intron (NM_001271594, intron 1 of 8)	intron (NM_001271594, intron 1 of 8)	-1761	NR_110295	100129203		NR_110295	ENSG00000245552	LOC100129203	-	uncharacterized LOC100129203	ncRNA
123019	chr19	51116621	51117180	+	0	NA	Intergenic	MIRb|SINE|MIR	-7980	NM_001198558	27180		NM_014441	ENSG00000129450	SIGLEC9	CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9	sialic acid binding Ig like lectin 9	protein-coding
176453	chr4	89296951	89297480	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	10585	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
370	chr1	1029871	1030530	+	0	NA	intron (NM_198576, intron 2 of 35)	intron (NM_198576, intron 2 of 35)	-3793	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
25308	chr10	6211651	6212430	+	0	NA	intron (NM_001314063, intron 1 of 15)	intron (NM_001314063, intron 1 of 15)	9108	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
70928	chr14	104388871	104389030	+	0	NA	Intergenic	Intergenic	165366	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
69468	chr14	95155271	95155630	+	0	NA	intron (NM_030621, intron 1 of 28)	intron (NM_030621, intron 1 of 28)	2079	NM_177438	23405		NM_030621	ENSG00000100697	DICER1	DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2|aviD	dicer 1, ribonuclease III	protein-coding
126077	chr2	25797401	25798300	+	0	NA	intron (NM_018263, intron 4 of 11)	L1MC1|LINE|L1	-3159	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
69100	chr14	92323171	92323630	+	0	NA	5' UTR (NM_153646, exon 1 of 17)	5' UTR (NM_153646, exon 1 of 17)	235	NM_153647	123041		NM_153646	ENSG00000140090	SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 member 4	protein-coding
211031	chr7	102419901	102420330	+	0	NA	intron (NR_038967, intron 8 of 8)	AluSx1|SINE|Alu	-13415	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
101530	chr17	67857371	67858030	+	0	NA	intron (NM_182641, intron 2 of 27)	AluJb|SINE|Alu	32197	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
68152	chr14	75565071	75565430	+	0	NA	Intergenic	L2a|LINE|L2	-13370	NM_017791	55640		NM_017791	ENSG00000119686	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2	FLVCR choline and putative heme transporter 2	protein-coding
116405	chr19	17969871	17971030	+	0	NA	intron (NM_002248, intron 2 of 10)	AluSx1|SINE|Alu	19148	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
195451	chr6	36982371	36983130	+	0	NA	intron (NM_001271641, intron 1 of 11)	intron (NM_001271641, intron 1 of 11)	3446	NM_001271641	23787		NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
40437	chr11	64199471	64199830	+	0	NA	intron (NM_001282653, intron 8 of 13)	AluY|SINE|Alu	-6270	NM_001382448	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
88061	chr16	81460671	81461100	+	0	NA	intron (NM_198390, intron 1 of 20)	MIRb|SINE|MIR	15715	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
19043	chr1	169697571	169698250	+	0	NA	intron (NM_000655, intron 7 of 8)	intron (NM_000655, intron 7 of 8)	10947	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
217800	chr8	33564471	33564630	+	0	NA	intron (NM_024787, intron 1 of 5)	AluJb|SINE|Alu	2578	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
148397	chr20	63933001	63933200	+	0	NA	3' UTR (NM_025219, exon 5 of 5)	3' UTR (NM_025219, exon 5 of 5)	8444	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
106722	chr18	23487721	23488460	+	0	NA	Intergenic	Intergenic	-15380	NM_001276342	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
2262	chr1	8918021	8918680	+	0	NA	Intergenic	Intergenic	-27518	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
58421	chr12	131921371	131922100	+	0	NA	3' UTR (NM_003565, exon 28 of 28)	3' UTR (NM_003565, exon 28 of 28)	-7541	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
49910	chr12	39613571	39613950	+	0	NA	intron (NM_005164, intron 2 of 9)	intron (NM_005164, intron 2 of 9)	6043	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
133963	chr2	130598071	130598630	+	0	NA	intron (NM_032545, intron 3 of 5)	intron (NM_032545, intron 3 of 5)	1225	NM_001270421	55997		NM_032545	ENSG00000136698	CFC1	CFC1B|CRYPTIC|DTGA2|HTX2	cryptic, EGF-CFC family member 1	protein-coding
75000	chr15	63945071	63946200	+	0	NA	intron (NR_169522, intron 3 of 11)	MIR3|SINE|MIR	17361	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
239072	chrY	7318371	7318530	+	0	NA	intron (NR_028062, intron 2 of 7)	FLAM_C|SINE|Alu	44478	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
84540	chr16	30549101	30549900	+	0	NA	Intergenic	Intergenic	8874	NM_033410	92595		NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
54013	chr12	75482271	75483480	+	0	NA	intron (NM_006851, intron 2 of 5)	L4_B_Mam|LINE|RTE-X	2120	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
223912	chr9	466471	466830	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-3641	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
204	chr1	730871	731030	+	0	NA	intron (NR_168328, intron 18 of 19)	intron (NR_168328, intron 18 of 19)	-44296	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
25742	chr10	9096001	9096630	+	0	NA	Intergenic	Intergenic	-179298	NR_108039	100507163		NR_108039		LINC00709	-	long intergenic non-protein coding RNA 709	ncRNA
187199	chr5	140666521	140666980	+	0	NA	intron (NM_017706, intron 1 of 6)	intron (NM_017706, intron 1 of 6)	1951	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
91033	chr17	2837101	2837650	+	0	NA	intron (NM_001100398, intron 2 of 23)	MLT1K|LTR|ERVL-MaLR	40937	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
160445	chr3	28667671	28667930	+	0	NA	intron (NR_038840, intron 2 of 4)	intron (NR_038840, intron 2 of 4)	92522	NR_038840	645206		NR_038840		LINC00693	-	long intergenic non-protein coding RNA 693	ncRNA
92005	chr17	7451451	7452080	+	0	NA	intron (NM_000747, intron 7 of 10)	intron (NM_000747, intron 7 of 10)	6704	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
74028	chr15	52220551	52222800	+	0	NA	intron (NM_018728, intron 29 of 40)	intron (NM_018728, intron 29 of 40)	-30283	NM_016194	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
27650	chr10	32995621	32996000	+	0	NA	Intergenic	Intergenic	-37580	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
223283	chr8	143737751	143738250	+	0	NA	intron (NM_001381874, intron 2 of 13)	intron (NM_001381874, intron 2 of 13)	3861	NM_001381874	642574		NM_001381874	ENSG00000203499	IQANK1	CACClnc|FAM83H-AS1|FAM83HAS1|onco-lncRNA-3	IQ motif and ankyrin repeat containing 1	protein-coding
40955	chr11	65336551	65336650	+	0	NA	intron (NM_001330308, intron 1 of 11)	AluSc5|SINE|Alu	2748	NM_001330308	5977		NM_006268	ENSG00000133884	DPF2	CSS7|REQ|SMARCG2|UBID4|ubi-d4	double PHD fingers 2	protein-coding
85113	chr16	34141151	34141250	+	0	NA	Intergenic	Intergenic	-22378	NR_162093	113218496		NR_162093		MIR9901	-	microRNA 9901	ncRNA
137335	chr2	196135421	196135830	+	0	NA	3' UTR (NM_004226, exon 8 of 8)	3' UTR (NM_004226, exon 8 of 8)	35953	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
174906	chr4	49097901	49098850	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	111733	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
139979	chr2	230905201	230906200	+	0	NA	Intergenic	Intergenic	19154	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
187042	chr5	139849521	139849850	+	0	NA	intron (NM_013981, intron 9 of 9)	intron (NM_013981, intron 9 of 9)	53877	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
209977	chr7	92815201	92815930	+	0	NA	intron (NM_001145306, intron 2 of 7)	L1ME1|LINE|L1	18394	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
165525	chr3	100490851	100491230	+	0	NA	Intergenic	Intergenic	-1579	NM_001363876	55076		NM_018004	ENSG00000181458	TMEM45A	DERP7|DNAPTP4	transmembrane protein 45A	protein-coding
33094	chr10	110911671	110912030	+	0	NA	intron (NM_001195304, intron 2 of 4)	intron (NM_001195304, intron 2 of 4)	7086	NM_001195306	92482		NM_001195304	ENSG00000214413	BBIP1	BBIP10|BBS18|NCRNA00081|bA348N5.3	BBSome interacting protein 1	protein-coding
30140	chr10	74083951	74084250	+	0	NA	intron (NM_014000, intron 8 of 21)	AluSg7|SINE|Alu	66728	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
24320	chr1	237470951	237471050	+	0	NA	promoter-TSS (NR_039626)	promoter-TSS (NR_039626)	-119	NR_039626	100616141		NR_039626	ENSG00000266262	MIR4428	-	microRNA 4428	ncRNA
226274	chr9	68305701	68306000	+	0	NA	TTS (NM_199135)	TTS (NM_199135)	2983	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
89217	chr16	88622551	88623050	+	0	NA	intron (NM_144604, intron 9 of 17)	intron (NM_144604, intron 9 of 17)	-15772	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
50913	chr12	49300321	49300580	+	0	NA	intron (NR_120449, intron 4 of 7)	AluY|SINE|Alu	5303	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
178178	chr4	142383321	142383830	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	19558	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
174656	chr4	40856821	40857350	+	0	NA	promoter-TSS (NM_001166051)	promoter-TSS (NM_001166051)	70	NM_001166051	323		NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
232954	chr9	136947821	136948450	+	0	NA	Intergenic	Intergenic	2892	NM_000606	733		NM_000606	ENSG00000176919	C8G	C8C	complement C8 gamma chain	protein-coding
184118	chr5	94569301	94569700	+	0	NA	intron (NM_001385723, intron 1 of 4)	intron (NM_001385723, intron 1 of 4)	48625	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
238885	chrX	154552151	154552680	+	0	NA	intron (NR_165197, intron 2 of 7)	LTR16A|LTR|ERVL	4568	NM_003639	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
200716	chr6	137536201	137536680	+	0	NA	Intergenic	L2a|LINE|L2	-42046	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
12479	chr1	107934271	107934680	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-29968	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
162449	chr3	48468121	48468530	+	0	NA	TTS (NM_007248)	TTS (NM_007248)	2095	NM_033629	11277		NM_007248	ENSG00000213689	TREX1	AGS1|CRV|DRN3|HERNS|RVCLS	three prime repair exonuclease 1	protein-coding
52064	chr12	54032221	54032900	+	0	NA	promoter-TSS (NM_018953)	promoter-TSS (NM_018953)	-490	NM_018953	3222		NM_018953	ENSG00000172789	HOXC5	CP11|HOX3|HOX3D	homeobox C5	protein-coding
82424	chr16	16307821	16308200	+	0	NA	Intergenic	MER57A1|LTR|ERV1	1640	NR_128712	103504726		NR_128712	ENSG00000265776	MIR3670-3	hsa-mir-3670-3	microRNA 3670-3	ncRNA
214789	chr7	151122721	151123000	+	0	NA	3' UTR (NM_001308304, exon 8 of 8)	3' UTR (NM_001308304, exon 8 of 8)	8222	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
66780	chr14	64671351	64672080	+	0	NA	Intergenic	Intergenic	-32709	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
4660	chr1	22350851	22350950	+	0	NA	Intergenic	Intergenic	84661	NR_039613	100616433		NR_039613	ENSG00000266564	MIR4418	-	microRNA 4418	ncRNA
140238	chr2	231800501	231800800	+	0	NA	intron (NM_001369483, intron 6 of 6)	intron (NM_001369483, intron 6 of 6)	14205	NM_001282950	64708		NM_022730	ENSG00000144524	COPS7B	CSN7B|SGN7b	COP9 signalosome subunit 7B	protein-coding
172812	chr4	3040021	3040480	+	0	NA	intron (NM_182982, intron 15 of 15)	AluSz|SINE|Alu	34264	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
187924	chr5	148855451	148856550	+	0	NA	Intergenic	Intergenic	29389	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
96350	chr17	40069701	40070830	+	0	NA	intron (NM_199334, intron 1 of 8)	intron (NM_199334, intron 1 of 8)	7300	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
190967	chr6	2958201	2958800	+	0	NA	intron (NM_001374517, intron 2 of 6)	intron (NM_001374517, intron 2 of 6)	3630	NM_001271825	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
229744	chr9	125133301	125133700	+	0	NA	intron (NM_173690, intron 2 of 18)	L1M4|LINE|L1	10028	NM_173690	286205		NM_173690	ENSG00000173611	SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
232604	chr9	136429751	136430050	+	0	NA	intron (NM_001318502, intron 9 of 9)	intron (NM_001318502, intron 9 of 9)	9945	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
165847	chr3	105856371	105857130	+	0	NA	intron (NM_001321811, intron 2 of 16)	intron (NM_001321811, intron 2 of 16)	10841	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
193139	chr6	29623521	29624180	+	0	NA	intron (NM_021903, intron 2 of 17).7	intron (NM_021903, intron 2 of 17).7	4378	NM_021903	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
231815	chr9	132416151	132416550	+	0	NA	intron (NM_001282957, intron 1 of 5)	AluSp|SINE|Alu	6139	NM_207417	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
118204	chr19	35142751	35143850	+	0	NA	promoter-TSS (NM_022006)	promoter-TSS (NM_022006)	45	NM_022006	53822		NM_022006	ENSG00000221946	FXYD7	-	FXYD domain containing ion transport regulator 7	protein-coding
102252	chr17	75266371	75266530	+	0	NA	TTS (NM_015971)	TTS (NM_015971)	3795	NM_001242500	57409		NM_020679	ENSG00000125457	MIF4GD	AD023|MIFD|SLIP1	MIF4G domain containing	protein-coding
128251	chr2	54563221	54563480	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	4956	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
70364	chr14	101883951	101884450	+	0	NA	intron (NM_178587, intron 5 of 11)	MLT2A2|LTR|ERVL	74337	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
112060	chr19	5150421	5150680	+	0	NA	intron (NM_015015, intron 22 of 22)	intron (NM_015015, intron 22 of 22)	181437	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
233362	chr9	137464921	137465930	+	0	NA	intron (NM_001098537, intron 26 of 34)	intron (NM_001098537, intron 26 of 34)	-6091	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228562	chr9	101705151	101705650	+	0	NA	intron (NM_133445, intron 1 of 8)	LTR1B0|LTR|ERV1	33247	NM_133445	116443		NM_133445	ENSG00000198785	GRIN3A	GluN3A|NMDAR-L|NMDAR3A|NR3A	glutamate ionotropic receptor NMDA type subunit 3A	protein-coding
202561	chr6	158670651	158671150	+	0	NA	intron (NM_001318745, intron 2 of 14)	AluY|SINE|Alu	7497	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
201514	chr6	149077271	149077630	+	0	NA	TTS (NM_005715)	TTS (NM_005715)	-44789	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
53809	chr12	69250521	69250780	+	0	NA	intron (NM_001300947, intron 1 of 10)	AluSz|SINE|Alu	11081	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
37104	chr11	13283671	13284030	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	6060	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
219466	chr8	73306651	73306950	+	0	NA	intron (NM_172037, intron 2 of 5)	intron (NM_172037, intron 2 of 5)	12198	NM_172037	157506		NM_172037	ENSG00000121039	RDH10	SDR16C4	retinol dehydrogenase 10	protein-coding
65172	chr14	49597951	49599400	+	0	NA	promoter-TSS (NR_037792)	promoter-TSS (NR_037792)	-22	NR_037793	122769		NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
145265	chr20	40741651	40741750	+	0	NA	Intergenic	L2b|LINE|L2	-27077	NR_145814	109623474		NR_145814		SNORD154	-	small nucleolar RNA, C/D box 154	snoRNA
138513	chr2	207235021	207235280	+	0	NA	intron (NR_110283, intron 3 of 3)	intron (NR_110283, intron 3 of 3)	-4661	NR_146555	105373853		NR_146555	ENSG00000229647	MYOSLID	-	myocardin-induced smooth muscle lncRNA, inducer of differentiation	ncRNA
123313	chr19	53575901	53576330	+	0	NA	intron (NM_001317116, intron 4 of 4)	AluSp|SINE|Alu	20808	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
78347	chr15	91101071	91101230	+	0	NA	promoter-TSS (NM_001323039)	promoter-TSS (NM_001323039)	199	NM_001323037	9899		NM_014848	ENSG00000185518	SV2B	HsT19680|SLC22B2	synaptic vesicle glycoprotein 2B	protein-coding
218007	chr8	38425621	38425880	+	0	NA	intron (NM_001354367, intron 6 of 17)	MIRb|SINE|MIR	38619	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
57827	chr12	123232521	123234280	+	0	NA	promoter-TSS (NM_152269)	promoter-TSS (NM_152269)	-36	NM_152269	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
109238	chr19	504671	505030	+	0	NA	exon (NM_130762, exon 4 of 4)	exon (NM_130762, exon 4 of 4)	-2647	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
81626	chr16	10871071	10871850	+	0	NA	Intergenic	Intergenic	-5738	NM_000246	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
189814	chr5	176985471	176986630	+	0	NA	intron (NR_146149, intron 1 of 15)	AluJr|SINE|Alu	20392	NM_016290	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
10882	chr1	78132521	78132780	+	0	NA	intron (NM_017655, intron 5 of 5)	intron (NM_017655, intron 5 of 5)	86684	NM_017655	54810		NM_017655	ENSG00000137960	GIPC2	SEMCAP-2|SEMCAP2	GIPC PDZ domain containing family member 2	protein-coding
161151	chr3	39051471	39052900	+	0	NA	promoter-TSS (NM_001349253)	promoter-TSS (NM_001349253)	-107	NM_001346228	57599		NM_020839	ENSG00000114742	WDR48	Bun62|P80|SPG60|UAF1	WD repeat domain 48	protein-coding
108928	chr18	79463421	79463680	+	0	NA	intron (NM_172389, intron 7 of 9)	intron (NM_172389, intron 7 of 9)	63251	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
169692	chr3	172045721	172046380	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	5519	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
127556	chr2	42346601	42347000	+	0	NA	intron (NM_001319038, intron 2 of 2)	L1ME3|LINE|L1	13238	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
131583	chr2	96843521	96845330	+	0	NA	promoter-TSS (NM_144994)	promoter-TSS (NM_144994)	-404	NM_144994	200539		NM_144994	ENSG00000163126	ANKRD23	DARP|MARP3	ankyrin repeat domain 23	protein-coding
79072	chr16	165831	166680	+	0	NA	intron (NM_001003938, intron 1 of 2)	CpG-8810	277	NM_001003938	3042		NM_001003938	ENSG00000206177	HBM	HBAP2|HBK	hemoglobin subunit mu	protein-coding
221678	chr8	126383701	126383980	+	0	NA	Intergenic	Intergenic	58345	NR_125421	101927657		NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
228475	chr9	99902951	99903450	+	0	NA	intron (NR_038853, intron 1 of 2)	L2c|LINE|L2	3401	NR_038853	441461		NR_038853		STX17-DT	STX17-AS1	STX17 divergent transcript	ncRNA
36555	chr11	6618901	6620130	+	0	NA	promoter-TSS (NM_000391)	promoter-TSS (NM_000391)	-93	NM_000391	1200		NM_000391	ENSG00000166340	TPP1	CLN2|GIG1|LPIC|SCAR7|TPP-1	tripeptidyl peptidase 1	protein-coding
199326	chr6	113632201	113632580	+	0	NA	intron (NR_125844, intron 1 of 2)	intron (NR_125844, intron 1 of 2)	17685	NR_125844	101927686		NR_125844	ENSG00000230943	LINC02541	-	long intergenic non-protein coding RNA 2541	ncRNA
208584	chr7	72913501	72913700	+	0	NA	intron (NM_172020, intron 2 of 13)	intron (NM_172020, intron 2 of 13)	22973	NM_172020	9883		NM_014833	ENSG00000196313	POM121	P145|POM121A	POM121 transmembrane nucleoporin	protein-coding
111752	chr19	4368701	4369600	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	25588	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
41319	chr11	65895901	65896230	+	0	NA	intron (NR_125339, intron 1 of 2)	AluJr|SINE|Alu	4323	NM_005438	8061		NM_005438	ENSG00000175592	FOSL1	FRA|FRA1|fra-1	FOS like 1, AP-1 transcription factor subunit	protein-coding
230180	chr9	127791251	127791600	+	0	NA	TTS (NM_001261)	TTS (NM_001261)	5391	NM_001261	1025		NM_001261	ENSG00000136807	CDK9	C-2k|CDC2L4|CTK1|PITALRE|TAK	cyclin dependent kinase 9	protein-coding
214617	chr7	150720401	150721000	+	0	NA	exon (NM_130759, exon 3 of 3)	exon (NM_130759, exon 3 of 3)	4087	NM_130759	170575		NM_130759	ENSG00000213203	GIMAP1	HIMAP1|IAN2|IMAP1|IMAP38	GTPase, IMAP family member 1	protein-coding
45311	chr11	118155551	118155980	+	0	NA	Intergenic	Intergenic	-2942	NM_174934	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
31387	chr10	94542121	94542650	+	0	NA	Intergenic	AluJr4|SINE|Alu	-3382	NM_001289067	3070		NM_018063	ENSG00000119969	HELLS	ICF4|LSH|Nbla10143|PASG|SALNR|SMARCA6	helicase, lymphoid specific	protein-coding
130686	chr2	86494921	86495180	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	53589	NM_001146688	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
232703	chr9	136549321	136549780	+	0	NA	non-coding (NR_121577, exon 3 of 3)	non-coding (NR_121577, exon 3 of 3)	1708	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
141094	chr2	238387471	238387630	+	0	NA	intron (NM_001139490, intron 13 of 14)	L1ME3B|LINE|L1	-39377	NM_001040445	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
229643	chr9	124218671	124219100	+	0	NA	Intergenic	Intergenic	-38721	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
24421	chr1	243487371	243488000	+	0	NA	TTS (NM_181690)	TTS (NM_181690)	141509	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
63888	chr14	21847921	21848180	+	0	NA	Intergenic	L1MEf|LINE|L1	-177033	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
218750	chr8	58890701	58890980	+	0	NA	intron (NM_014729, intron 3 of 8)	intron (NM_014729, intron 3 of 8)	228307	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
166400	chr3	113557971	113558130	+	0	NA	intron (NM_001322297, intron 1 of 24)	(GAGA)n|Simple_repeat|Simple_repeat	25495	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
65324	chr14	50113371	50113980	+	0	NA	intron (NR_049738, intron 4 of 5)	intron (NR_049738, intron 4 of 5)	2897	NM_001040662	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
114778	chr19	13760871	13761680	+	0	NA	intron (NM_001320561, intron 9 of 10)	AluYj4|SINE|Alu	-3247	NM_032285	84245		NM_032285	ENSG00000037757	MRI1	M1Pi|MRDI|MTNA|Ypr118w	methylthioribose-1-phosphate isomerase 1	protein-coding
28013	chr10	43196601	43196800	+	0	NA	intron (NM_001282862, intron 11 of 12)	intron (NM_001282862, intron 11 of 12)	33039	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
37921	chr11	34163071	34163230	+	0	NA	intron (NM_145804, intron 9 of 16)	MIRb|SINE|MIR	57521	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
121717	chr19	47611451	47611830	+	0	NA	intron (NM_015711, intron 1 of 14)	intron (NM_015711, intron 1 of 14)	3444	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
224652	chr9	20698871	20699050	+	0	NA	intron (NM_017794, intron 3 of 45)	intron (NM_017794, intron 3 of 45)	-14210	NR_121601	101929548		NR_121601	ENSG00000227071	FOCAD-AS1	-	FOCAD antisense RNA 1	ncRNA
89259	chr16	88657951	88658050	+	0	NA	exon (NM_002461, exon 3 of 10)	exon (NM_002461, exon 3 of 10)	5091	NM_002461	4597		NM_002461	ENSG00000167508	MVD	FP17780|MDDase|MPD|POROK7	mevalonate diphosphate decarboxylase	protein-coding
145427	chr20	43463071	43463830	+	0	NA	non-coding (NR_034009, exon 7 of 7)	non-coding (NR_034009, exon 7 of 7)	5554	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
178598	chr4	151940371	151940600	+	0	NA	Intergenic	Intergenic	-160268	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
92738	chr17	14310371	14310750	+	0	NA	intron (NM_006041, intron 1 of 1)	intron (NM_006041, intron 1 of 1)	6820	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
187579	chr5	142817371	142817730	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	46323	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
173916	chr4	25240121	25240380	+	0	NA	intron (NM_018323, intron 1 of 9)	HERV9NC-int|LTR|ERV1	6217	NM_018323	55300		NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
63181	chr13	113730771	113731150	+	0	NA	intron (NM_002929, intron 4 of 6)	intron (NM_002929, intron 4 of 6)	20129	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
130112	chr2	74532001	74532440	+	0	NA	TTS (NM_032603)	TTS (NM_032603)	2287	NM_013247	27429		NM_013247	ENSG00000115317	HTRA2	MGCA8|OMI|PARK13|PRSS25	HtrA serine peptidase 2	protein-coding
43578	chr11	83073421	83073680	+	0	NA	non-coding (NR_038903, exon 3 of 3)	non-coding (NR_038903, exon 3 of 3)	1484	NR_038903	100506233		NR_038903		RAB30-DT	RAB30-AS1	RAB30 divergent transcript	ncRNA
52916	chr12	57234621	57235380	+	0	NA	TTS (NM_001166359)	TTS (NM_001166359)	4634	NR_048562	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
92569	chr17	9022301	9022630	+	0	NA	exon (NM_004822, exon 2 of 7)	exon (NM_004822, exon 2 of 7)	955	NM_004822	9423		NM_004822	ENSG00000065320	NTN1	MRMV4|NET1|NTN1L	netrin 1	protein-coding
140547	chr2	233260451	233260550	+	0	NA	intron (NM_198890, intron 2 of 13).2	MER5A|DNA|hAT-Charlie	8827	NM_017974	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
30985	chr10	88069401	88069600	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	205875	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
224902	chr9	32524751	32525580	+	0	NA	intron (NM_014314, intron 1 of 17)	LTR3A|LTR|ERVK	1031	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
71262	chr14	105208651	105209050	+	0	NA	TTS (NM_001519)	TTS (NM_001519)	-27527	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
142829	chr20	17506101	17508450	+	0	NA	intron (NM_001195, intron 5 of 7)	(GT)n|Simple_repeat|Simple_repeat	24104	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
128787	chr2	62300971	62301150	+	0	NA	Intergenic	Intergenic	85539	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
26975	chr10	26739051	26739530	+	0	NA	intron (NM_001321979, intron 10 of 11)	intron (NM_001321979, intron 10 of 11)	41589	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
115520	chr19	15430621	15431030	+	0	NA	intron (NM_001371589, intron 6 of 12)	intron (NM_001371589, intron 6 of 12)	1936	NM_001330395	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
25868	chr10	11249171	11249630	+	0	NA	intron (NM_001326330, intron 4 of 12)	intron (NM_001326330, intron 4 of 12)	84370	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
205021	chr7	6500521	6501100	+	0	NA	intron (NM_001145118, intron 20 of 21)	intron (NM_001145118, intron 20 of 21)	-16658	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
128619	chr2	61181551	61181850	+	0	NA	intron (NR_152210, intron 2 of 5)	MIRb|SINE|MIR	4282	NR_152212	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
121560	chr19	47260301	47260830	+	0	NA	intron (NM_015603, intron 4 of 11)	intron (NM_015603, intron 4 of 11)	4040	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
129296	chr2	68505851	68506550	+	0	NA	intron (NM_173545, intron 3 of 9)	HERV16-int|LTR|ERVL	38615	NM_173545	200558		NM_173545	ENSG00000169621	APLF	APFL|C2orf13|PALF|Xip1|ZCCHH1	aprataxin and PNKP like factor	protein-coding
77840	chr15	88649471	88650430	+	0	NA	intron (NM_001303237, intron 2 of 3)	MIR3|SINE|MIR	10934	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
220163	chr8	95085901	95086100	+	0	NA	intron (NR_148914, intron 9 of 11)	MER110-int|LTR|ERV1	-12818	NR_132986	105375650		NR_132986	ENSG00000245080	MIR3150BHG	-	MIR3150B host gene	ncRNA
58320	chr12	131105721	131106330	+	0	NA	intron (NM_001330497, intron 18 of 25)	intron (NM_001330497, intron 18 of 25)	-58986	NR_026670	116437		NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
74316	chr15	58362901	58363480	+	0	NA	Intergenic	L1PA7|LINE|L1	-68801	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
154326	chr22	32137251	32138550	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	15923	NR_040114	23782		NR_040114	ENSG00000290475	AP1B1P1	ADTB1L1|dJ127L4.2	AP1B1 pseudogene 1	pseudo
160069	chr3	18717701	18718180	+	0	NA	Intergenic	Intergenic	-272348	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
124009	chr19	55463501	55464730	+	0	NA	Intergenic	L2a|LINE|L2	-2473	NM_024710	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
62847	chr13	110116151	110116330	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-5462	NR_148221	105370361		NR_148221		LINC03032	-	long intergenic non-protein coding RNA 3032	ncRNA
152546	chr22	20997251	20997350	+	0	NA	exon (NM_006767, exon 21 of 21)	exon (NM_006767, exon 21 of 21)	-4622	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
36653	chr11	8014601	8014800	+	0	NA	intron (NR_125366, intron 1 of 2)	MLT1A0|LTR|ERVL-MaLR	1809	NR_125366	103581031		NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility 23	ncRNA
121689	chr19	47521921	47522450	+	0	NA	intron (NM_001277075, intron 14 of 16)	intron (NM_001277075, intron 14 of 16)	-7122	NR_038456	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
110440	chr19	1980671	1981650	+	0	NA	3' UTR (NM_001319, exon 12 of 12)	3' UTR (NM_001319, exon 12 of 12)	-26611	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
75599	chr15	67102021	67104750	+	0	NA	intron (NM_005902, intron 1 of 8)	MIRc|SINE|MIR	-22331	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
21169	chr1	203766971	203767130	+	0	NA	intron (NM_017773, intron 1 of 4)	AluSx|SINE|Alu	1867	NM_017773	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
25161	chr10	5291321	5293130	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-20989	NR_149060	110806285		NR_149060	ENSG00000224034	LINC02561	-	long intergenic non-protein coding RNA 2561	ncRNA
71591	chr14	106513371	106513680	+	0	NA	Intergenic	L1MCb|LINE|L1	31086	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
32399	chr10	102435371	102436180	+	0	NA	promoter-TSS (NR_030169)	promoter-TSS (NR_030169)	-737	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B|mir-146b	microRNA 146b	ncRNA
34085	chr10	125149251	125149750	+	0	NA	intron (NM_001290214, intron 1 of 10)	intron (NM_001290214, intron 1 of 10)	9277	NM_001321013	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
109547	chr19	875501	876300	+	0	NA	intron (NM_005481, intron 9 of 15)	AluJr|SINE|Alu	16236	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
236126	chrX	57594001	57594650	+	0	NA	exon (NM_007157, exon 1 of 1)	exon (NM_007157, exon 1 of 1)	2314	NM_007157	158586		NM_007157	ENSG00000198455	ZXDB	ZNF905|dJ83L6.1	zinc finger X-linked duplicated B	protein-coding
129268	chr2	68391021	68391680	+	0	NA	intron (NM_002664, intron 6 of 8)	intron (NM_002664, intron 6 of 8)	26068	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
160363	chr3	27858871	27859030	+	0	NA	intron (NR_146630, intron 4 of 4)	L1PA11|LINE|L1	-24814	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
213607	chr7	139406201	139406430	+	0	NA	intron (NM_016019, intron 5 of 9)	AluSp|SINE|Alu	21211	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
135241	chr2	159516001	159516820	+	0	NA	intron (NM_001289975, intron 2 of 35)	intron (NM_001289975, intron 2 of 35)	-98884	NR_110588	643072		NR_110587	ENSG00000224152	BAZ2B-AS1	lnc-BAZ2B	BAZ2B antisense RNA 1	ncRNA
45410	chr11	118351001	118352200	+	0	NA	intron (NM_000073, intron 4 of 6)	L1ME3A|LINE|L1	7256	NM_000073	917		NM_000073	ENSG00000160654	CD3G	CD3-GAMMA|CD3GAMMA|IMD17|T3G	CD3 gamma subunit of T-cell receptor complex	protein-coding
115377	chr19	15240321	15240580	+	0	NA	intron (NM_001379291, intron 14 of 19)	intron (NM_001379291, intron 14 of 19)	-7403	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
182746	chr5	68277751	68278200	+	0	NA	intron (NM_181523, intron 4 of 15)	intron (NM_181523, intron 4 of 15)	-10544	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
177261	chr4	109431971	109432130	+	0	NA	intron (NR_039978, intron 1 of 2)	MER34|LTR|ERV1	-1665	NM_001042734	10427		NM_006323	ENSG00000138802	SEC24B	SEC24	SEC24 homolog B, COPII coat complex component	protein-coding
136620	chr2	179020201	179020580	+	0	NA	intron (NM_173648, intron 2 of 23)	intron (NM_173648, intron 2 of 23)	29747	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
148120	chr20	63445601	63446650	+	0	NA	intron (NM_001382235, intron 2 of 16)	intron (NM_001382235, intron 2 of 16)	26530	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
22947	chr1	225992151	225992250	+	0	NA	intron (NM_152608, intron 4 of 6)	intron (NM_152608, intron 4 of 6)	7143	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
46585	chr11	128513921	128514480	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	8110	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
175433	chr4	71095301	71095950	+	0	NA	Intergenic	Intergenic	-91140	NM_001134742	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
41357	chr11	65967521	65968100	+	0	NA	exon (NM_005146, exon 12 of 20)	exon (NM_005146, exon 12 of 20)	6076	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
174035	chr4	26863421	26863830	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	2784	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
53369	chr12	64668951	64670570	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-47155	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
162065	chr3	46860201	46860600	+	0	NA	intron (NM_000258, intron 3 of 6)	intron (NM_000258, intron 3 of 6)	3044	NM_000258	4634		NM_000258	ENSG00000160808	MYL3	CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl	myosin light chain 3	protein-coding
123980	chr19	55435271	55435830	+	0	NA	intron (NM_001145176, intron 3 of 3)	AluJo|SINE|Alu	7313	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
73132	chr15	41330471	41330930	+	0	NA	intron (NM_007280, intron 2 of 4)	AluY|SINE|Alu	1891	NM_007280	11339		NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
14438	chr1	144392971	144393330	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-19426	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
65968	chr14	56195771	56196100	+	0	NA	intron (NM_021255, intron 2 of 5)	intron (NM_021255, intron 2 of 5)	77524	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
66875	chr14	65082401	65082600	+	0	NA	intron (NM_145113, intron 3 of 5)	AluJo|SINE|Alu	-7418	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
213957	chr7	142723151	142723330	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-26232	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
196431	chr6	43452751	43453430	+	0	NA	exon (NM_001286656, exon 4 of 6)	exon (NM_001286656, exon 4 of 6)	2458	NM_023932	65989		NM_023932	ENSG00000171462	DLK2	DLK-2|EGFL9	delta like non-canonical Notch ligand 2	protein-coding
7955	chr1	37597371	37597830	+	0	NA	Intergenic	Intergenic	-1615	NM_001323624	29889		NM_013285	ENSG00000134697	GNL2	HUMAUANTIG|NGP1|Ngp-1|Nog2|Nug2	G protein nucleolar 2	protein-coding
158121	chr22	50058371	50059030	+	0	NA	promoter-TSS (NM_001350317)	promoter-TSS (NM_001350317)	-473	NM_001350317	164714		NM_001080447	ENSG00000138892	TTLL8	-	tubulin tyrosine ligase like 8	protein-coding
109825	chr19	1172651	1172900	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	1493	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
124303	chr19	57915351	57915450	+	0	NA	intron (NM_152475, intron 1 of 2)	intron (NM_152475, intron 1 of 2)	1192	NM_001297734	147687		NM_152475	ENSG00000173480	ZNF417	-	zinc finger protein 417	protein-coding
188823	chr5	159071471	159071730	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	26356	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
8529	chr1	41015571	41015900	+	0	NA	non-coding (NR_037868, exon 1 of 4)	non-coding (NR_037868, exon 1 of 4)	1145	NR_037868	100507178		NR_037868	ENSG00000281207	SLFNL1-AS1	-	SLFNL1 antisense RNA 1	ncRNA
157779	chr22	46751621	46751880	+	0	NA	Intergenic	Intergenic	-10867	NM_001284303	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
23239	chr1	227776101	227776500	+	0	NA	non-coding (NR_136657, exon 4 of 4)	non-coding (NR_136657, exon 4 of 4)	-10512	NR_168381	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
139524	chr2	224572071	224572650	+	0	NA	intron (NM_003590, intron 1 of 15)	MLT1A1|LTR|ERVL-MaLR	-2405	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
178566	chr4	151117321	151117780	+	0	NA	Intergenic	Intergenic	13723	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
36334	chr11	3880671	3881180	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	24863	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
96451	chr17	40216621	40217130	+	0	NA	Intergenic	L2b|LINE|L2	-2429	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
23988	chr1	235222701	235222900	+	0	NA	intron (NM_016374, intron 13 of 23)	AluSz6|SINE|Alu	-32684	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
222531	chr8	140578701	140578900	+	0	NA	intron (NM_012154, intron 2 of 18)	intron (NM_012154, intron 2 of 18)	56833	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
208532	chr7	70647601	70648800	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-483944	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
70804	chr14	103543921	103544380	+	0	NA	Intergenic	Intergenic	14954	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
183108	chr5	74637851	74638450	+	0	NA	intron (NM_001256574, intron 1 of 3)	intron (NM_001256574, intron 1 of 3)	-1873	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
102350	chr17	75506071	75506680	+	0	NA	exon (NM_020753, exon 8 of 20)	exon (NM_020753, exon 8 of 20)	3515	NM_001142643	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
107915	chr18	57585951	57587100	+	0	NA	intron (NM_001371095, intron 1 of 11)	CpG	177	NM_001371095	2235		NM_000140	ENSG00000066926	FECH	EPP|EPP1|FCE	ferrochelatase	protein-coding
233260	chr9	137279421	137279680	+	0	NA	exon (NM_017723, exon 2 of 2)	exon (NM_017723, exon 2 of 2)	1824	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
86797	chr16	67826051	67826550	+	0	NA	intron (NM_001288993, intron 7 of 12)	intron (NM_001288993, intron 7 of 12)	-16020	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
222816	chr8	142471551	142472420	+	0	NA	intron (NM_001702, intron 2 of 30)	intron (NM_001702, intron 2 of 30)	22336	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
40729	chr11	64813121	64813650	+	0	NA	Intergenic	AluJr|SINE|Alu	-2091	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
69527	chr14	96390351	96390450	+	0	NA	Intergenic	MIRb|SINE|MIR	-1728	NM_152327	122481		NM_152327	ENSG00000140057	AK7	AK 7|CFAP75|FAP75|SPGF27	adenylate kinase 7	protein-coding
140825	chr2	236550021	236550280	+	0	NA	Intergenic	Intergenic	-19675	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
230648	chr9	128694021	128695000	+	0	NA	intron (NM_001374326, intron 8 of 8)	intron (NM_001374326, intron 8 of 8)	4536	NM_001248001	6418		NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|MRD58|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
96110	chr17	39634201	39634950	+	0	NA	intron (NM_032192, intron 5 of 6)	intron (NM_032192, intron 5 of 6)	-2505	NM_001165937	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
148773	chr21	8203551	8204050	+	0	NA	intron (NR_038958, intron 2 of 6)	AluSp|SINE|Alu	-1515	NR_128716	103504739		NR_128716	ENSG00000277379	MIR6724-3	hsa-mir-6724-3	microRNA 6724-3	ncRNA
149856	chr21	35172221	35172580	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-123098	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
196396	chr6	43283451	43283780	+	0	NA	exon (NM_032538, exon 14 of 15)	exon (NM_032538, exon 14 of 15)	-14645	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
1486	chr1	2750571	2750730	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	50218	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
75825	chr15	69443121	69443780	+	0	NA	intron (NM_001281301, intron 17 of 20)	AluJb|SINE|Alu	-9368	NM_001003	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
1361	chr1	2503401	2504180	+	0	NA	3' UTR (NM_001303012, exon 22 of 22)	3' UTR (NM_001303012, exon 22 of 22)	22806	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
193425	chr6	30461701	30462400	+	0	NA	Intergenic	Intergenic	-27459	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
188241	chr5	151028671	151029280	+	0	NA	TTS (NM_002084)	TTS (NM_002084)	8384	NM_002084	2878		NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
152579	chr22	21130771	21130930	+	0	NA	Intergenic	Intergenic	27834	NR_037566	400892		NM_207474	ENSG00000291044	BCRP2	BCR-2|BCR2|BCRL2	BCR pseudogene 2	pseudo
58090	chr12	124612371	124612730	+	0	NA	Intergenic	Intergenic	-44938	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
9785	chr1	53557001	53557200	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	97701	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
60456	chr13	41029571	41029830	+	0	NA	intron (NM_001370329, intron 1 of 9)	MLT2B3|LTR|ERVL	-10384	NM_172373	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
218882	chr8	60550101	60550300	+	0	NA	intron (NM_001242644, intron 1 of 6)	L2a|LINE|L2	33213	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
208905	chr7	74002671	74003050	+	0	NA	Intergenic	Intergenic	-24929	NM_001278939	2006		NM_000501	ENSG00000049540	ELN	ADCL1|SVAS|WBS|WS	elastin	protein-coding
213365	chr7	135830871	135831030	+	0	NA	Intergenic	Intergenic	-82137	NM_001369697	389558		NM_205855	ENSG00000189320	FAM180A	UNQ1940	family with sequence similarity 180 member A	protein-coding
88373	chr16	84596701	84596900	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	21278	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
166622	chr3	119500551	119501000	+	0	NA	exon (NM_016589, exon 2 of 7)	exon (NM_016589, exon 2 of 7)	2228	NM_016589	51300		NM_016589	ENSG00000113845	TIMMDC1	C3orf1|MC1DN31	translocase of inner mitochondrial membrane domain containing 1	protein-coding
88425	chr16	84730371	84730950	+	0	NA	intron (NM_001272075, intron 2 of 14)	intron (NM_001272075, intron 2 of 14)	30660	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
227731	chr9	93056921	93057400	+	0	NA	Intergenic	Intergenic	-1528	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
211812	chr7	107924921	107925400	+	0	NA	intron (NM_002291, intron 32 of 33)	intron (NM_002291, intron 32 of 33)	33977	NM_000108	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
58065	chr12	124540451	124540750	+	0	NA	intron (NM_001077261, intron 1 of 47)	G-rich|Low_complexity|Low_complexity	27012	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
180775	chr5	32170721	32171380	+	0	NA	intron (NM_022130, intron 1 of 3)	intron (NM_022130, intron 1 of 3)	3269	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
208655	chr7	73083821	73084080	+	0	NA	intron (NM_001382563, intron 1 of 6).3	AluSx|SINE|Alu	741	NM_001382563	105180390		NM_001382563	ENSG00000286038	SPDYE13	SPDYE13P	speedy/RINGO cell cycle regulator family member E13	protein-coding
201458	chr6	148617571	148617730	+	0	NA	Intergenic	MIRb|SINE|MIR	108499	NM_001346509	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
32029	chr10	101018971	101019750	+	0	NA	intron (NM_024895, intron 7 of 9)	intron (NM_024895, intron 7 of 9)	11769	NM_001195263	79955		NM_024895	ENSG00000186862	PDZD7	DFNB57|PDZK7	PDZ domain containing 7	protein-coding
981	chr1	1824701	1825200	+	0	NA	intron (NM_001282539, intron 2 of 10)	intron (NM_001282539, intron 2 of 10)	-44919	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
191539	chr6	11460101	11460550	+	0	NA	Intergenic	Intergenic	-77424	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
100856	chr17	64216501	64216900	+	0	NA	intron (NM_001288732, intron 1 of 11)	intron (NM_001288732, intron 1 of 11)	14034	NM_001288733	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
65094	chr14	39762821	39763350	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-330585	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
19212	chr1	172450671	172450830	+	0	NA	intron (NM_139240, intron 3 of 6)	L1M4c|LINE|L1	-2143	NM_001300760	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
228098	chr9	96442371	96442880	+	0	NA	Intergenic	Intergenic	-7544	NM_014282	22927		NM_014282	ENSG00000130956	HABP4	IHABP-4|IHABP4|Ki-1/57|SERBP1L	hyaluronan binding protein 4	protein-coding
45858	chr11	119533821	119534250	+	0	NA	Intergenic	Intergenic	-109050	NM_001311162	7070		NM_006288	ENSG00000154096	THY1	CD90|CDw90	Thy-1 cell surface antigen	protein-coding
220310	chr8	98466551	98466650	+	0	NA	intron (NM_001256312, intron 12 of 12)	LTR78B|LTR|ERV1	39642	NM_020697	3788		NM_020697	ENSG00000156486	KCNS2	KV9.2	potassium voltage-gated channel modifier subfamily S member 2	protein-coding
135823	chr2	170411751	170411930	+	0	NA	intron (NR_045682, intron 22 of 35)	intron (NR_045682, intron 22 of 35)	-60897	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
217933	chr8	38091621	38091880	+	0	NA	Intergenic	HERV1_LTRa|LTR|ERV1	-13743	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
163551	chr3	51691301	51691700	+	0	NA	intron (NM_015926, intron 3 of 4)	intron (NM_015926, intron 3 of 4)	-15568	NM_001349116	2912		NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate metabotropic receptor 2	protein-coding
203114	chr6	166572421	166572700	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	-27870	NM_001318938	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
115871	chr19	16561971	16562130	+	0	NA	intron (NM_024881, intron 4 of 5)	(AACAA)n|Simple_repeat|Simple_repeat	10365	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
176947	chr4	103032571	103032750	+	0	NA	intron (NM_178833, intron 9 of 11)	LTR41|LTR|ERVL	-12955	NM_139173	150159		NM_139173	ENSG00000164037	SLC9B1	NHA1|NHEDC1	solute carrier family 9 member B1	protein-coding
10551	chr1	67055921	67056500	+	0	NA	Intergenic	L2c|LINE|L2	-2062	NM_015139	23169		NM_015139	ENSG00000116704	SLC35D1	SHNKND|UGTREL7	solute carrier family 35 member D1	protein-coding
197085	chr6	56893921	56895230	+	0	NA	intron (NM_001374736, intron 3 of 103)	SVA_E|Retroposon|SVA	-42670	NM_001144770	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
54242	chr12	82361651	82361750	+	0	NA	intron (NR_144942, intron 1 of 10)	LTR12C|LTR|ERV1	-2895	NR_033192	29080		NM_014167	ENSG00000133773	CCDC59	BR22|HSPC128|TAP26	coiled-coil domain containing 59	protein-coding
136174	chr2	174462651	174463200	+	0	NA	intron (NM_001267050, intron 8 of 16)	MIR3|SINE|MIR	24104	NM_001267050	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
148674	chr21	6137421	6137730	+	0	NA	Intergenic	Intergenic	26444	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
187546	chr5	142773621	142773950	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	2558	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
53167	chr12	58291171	58291330	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	203358	NR_135022	105369785		NR_135022	ENSG00000257541	LINC02403	-	long intergenic non-protein coding RNA 2403	ncRNA
24509	chr1	244599671	244600250	+	0	NA	intron (NM_173807, intron 17 of 20)	L2b|LINE|L2	-53166	NM_016076	51029		NM_016076	ENSG00000121644	DESI2	C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
170216	chr3	184157001	184157580	+	0	NA	intron (NM_004423, intron 1 of 14)	intron (NM_004423, intron 1 of 14)	1913	NM_004423	1857		NM_004423	ENSG00000161202	DVL3	DRS3	dishevelled segment polarity protein 3	protein-coding
41159	chr11	65605201	65605400	+	0	NA	intron (NM_002419, intron 8 of 9)	intron (NM_002419, intron 8 of 9)	8921	NM_002419	4296		NM_002419	ENSG00000173327	MAP3K11	MEKK11|MLK-3|MLK3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding
45151	chr11	117201671	117202200	+	0	NA	promoter-TSS (NR_045215)	promoter-TSS (NR_045215)	-21	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
79194	chr16	333771	334500	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	18588	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
92820	chr17	16030621	16030880	+	0	NA	3' UTR (NM_006311, exon 46 of 46)	3' UTR (NM_006311, exon 46 of 46)	30926	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
131755	chr2	98463321	98464600	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	17950	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
202423	chr6	157908651	157908950	+	0	NA	intron (NM_016224, intron 7 of 17)	intron (NM_016224, intron 7 of 17)	-73063	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
85634	chr16	55435471	55435630	+	0	NA	intron (NR_147198, intron 4 of 6)	intron (NR_147198, intron 4 of 6)	26747	NR_147198	107984884		NR_147198		MMP2-AS1	-	MMP2 antisense RNA 1	ncRNA
133183	chr2	112936351	112936450	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	21207	NM_173205	27178		NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-23|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
234356	chrX	15643901	15644100	+	0	NA	intron (NM_020665, intron 4 of 5)	intron (NM_020665, intron 4 of 5)	20805	NM_020665	57393		NM_020665	ENSG00000147003	CLTRN	NX-17|NX17|TMEM27	collectrin, amino acid transport regulator	protein-coding
147448	chr20	58980821	58982210	+	0	NA	intron (NM_198976, intron 1 of 14)	CpG	259	NM_198976	51497		NM_016397	ENSG00000101158	NELFCD	HSPC130|NELF-C|NELF-D|TH1|TH1L	negative elongation factor complex member C/D	protein-coding
39345	chr11	59430001	59430230	+	0	NA	Intergenic	Intergenic	-6354	NM_001004728	219982		NM_001004728	ENSG00000172320	OR5A1	OR11-249|OR5A1P|OST181	olfactory receptor family 5 subfamily A member 1	protein-coding
228066	chr9	96149901	96150930	+	0	NA	Intergenic	Intergenic	-34004	NR_132344	158434		NM_001256408	ENSG00000275465	LOC158434	-	uncharacterized LOC158434	ncRNA
150462	chr21	42524371	42525730	+	0	NA	intron (NM_018964, intron 3 of 20)	MER21C|LTR|ERVL	11198	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
203636	chr7	967021	967300	+	0	NA	3' UTR (NM_001031617, exon 3 of 3)	3' UTR (NM_001031617, exon 3 of 3)	8389	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
32197	chr10	101767151	101768130	+	0	NA	Intergenic	Intergenic	8474	NM_033164	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
140792	chr2	235779471	235779700	+	0	NA	intron (NM_001037131, intron 6 of 17)	intron (NM_001037131, intron 6 of 17)	-261664	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
110054	chr19	1481001	1482450	+	0	NA	3' UTR (NM_017573, exon 15 of 15)	3' UTR (NM_017573, exon 15 of 15)	-2510	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
48171	chr12	7969671	7969830	+	0	NA	Intergenic	Intergenic	-33563	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
120001	chr19	41925751	41926780	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	2184	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
103130	chr17	77387921	77388600	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	8794	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
68588	chr14	89466321	89467280	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	49446	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
227959	chr9	94870821	94871830	+	0	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	61363	NR_031755	100313780		NR_031755	ENSG00000252153	MIR2278	mir-2278	microRNA 2278	ncRNA
160110	chr3	19885401	19885700	+	0	NA	intron (NM_144715, intron 10 of 12)	intron (NM_144715, intron 10 of 12)	48667	NM_144715	151651		NM_144715	ENSG00000163576	EFHB	CFAP21	EF-hand domain family member B	protein-coding
229407	chr9	121199171	121199430	+	0	NA	intron (NM_016322, intron 1 of 7)	L1MC5|LINE|L1	-2183	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
238151	chrX	136770371	136770730	+	0	NA	intron (NM_004840, intron 2 of 21)	L1M4|LINE|L1	-2735	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
120334	chr19	43540251	43540750	+	0	NA	Intergenic	MIR3|SINE|MIR	7312	NM_174945	284346		NM_174945	ENSG00000176472	ZNF575	-	zinc finger protein 575	protein-coding
11530	chr1	90994601	90994800	+	0	NA	intron (NM_032186, intron 1 of 3)	L1M4a1|LINE|L1	26808	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
21367	chr1	205119021	205119280	+	0	NA	intron (NM_001193272, intron 1 of 13)	AluSx1|SINE|Alu	2828	NM_001193273	5929		NM_005057	ENSG00000117222	RBBP5	RBQ3|SWD1	RB binding protein 5, histone lysine methyltransferase complex subunit	protein-coding
167235	chr3	128485401	128485980	+	0	NA	intron (NM_032638, intron 3 of 5)	intron (NM_032638, intron 3 of 5)	2231	NM_001145662	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
156156	chr22	40195651	40195950	+	0	NA	intron (NM_015088, intron 1 of 20)	AluY|SINE|Alu	17875	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
172304	chr4	1582271	1582680	+	0	NA	Intergenic	Intergenic	101516	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
48878	chr12	12474501	12475900	+	0	NA	3' UTR (NM_030640, exon 7 of 7)	3' UTR (NM_030640, exon 7 of 7)	87663	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
76374	chr15	74603471	74603850	+	0	NA	Intergenic	Intergenic	-4712	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
5753	chr1	26479521	26479980	+	0	NA	Intergenic	AluSq2|SINE|Alu	7310	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
219075	chr8	65828601	65829080	+	0	NA	intron (NM_001242318, intron 1 of 12)	L1ME4a|LINE|L1	13224	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
227609	chr9	92752151	92752450	+	0	NA	intron (NM_001003800, intron 1 of 6)	L1MC3|LINE|L1	12533	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
157746	chr22	46635171	46635930	+	0	NA	intron (NM_001366660, intron 2 of 17)	intron (NM_001366660, intron 2 of 17)	15164	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
94217	chr17	28641371	28641730	+	0	NA	intron (NM_014680, intron 7 of 38)	AluSc8|SINE|Alu	3608	NM_001321560	9703		NM_014680	ENSG00000007202	BLTP2	BCOX|BCOX1|CT101|FMP27|Hob|KIAA0100	bridge-like lipid transfer protein family member 2	protein-coding
164061	chr3	53881691	53883350	+	0	NA	promoter-TSS (NM_022899)	promoter-TSS (NM_022899)	-368	NM_022899	93973		NM_022899	ENSG00000113812	ACTR8	ARP8|INO80N|hArp8	actin related protein 8	protein-coding
230960	chr9	129440371	129441200	+	0	NA	Intergenic	Intergenic	-47875	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
68312	chr14	77369421	77369680	+	0	NA	intron (NM_001346131, intron 1 of 5)	L1ME3B|LINE|L1	4359	NM_001346134	283578		NM_213601	ENSG00000100580	TMED8	FAM15B	transmembrane p24 trafficking protein family member 8	protein-coding
136402	chr2	176139771	176139930	+	0	NA	non-coding (NR_148241, exon 2 of 2)	non-coding (NR_148241, exon 2 of 2)	-2752	NR_038435	100506783		NR_038435		HOXD-AS2	-	HOXD cluster antisense RNA 2	ncRNA
173662	chr4	13664651	13664750	+	0	NA	intron (NR_121681, intron 2 of 3)	L1PA3|LINE|L1	9521	NR_121681	101929071		NR_121681	ENSG00000250634	LINC01182	-	long intergenic non-protein coding RNA 1182	ncRNA
172031	chr4	996421	996750	+	0	NA	intron (NR_110313, intron 2 of 13)	intron (NR_110313, intron 2 of 13)	-3125	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
224535	chr9	19229071	19229230	+	0	NA	Intergenic	AluSp|SINE|Alu	-1543	NM_001330640	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
51237	chr12	50923851	50925200	+	0	NA	promoter-TSS (NM_014033)	promoter-TSS (NM_014033)	-490	NM_014033	25840		NM_014033	ENSG00000185432	TMT1A	AAM-B|AAMB|METTL7A	thiol methyltransferase 1A	protein-coding
89779	chr16	89475021	89475500	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	15301	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
117332	chr19	19524101	19525000	+	0	NA	intron (NM_015965, intron 1 of 4)	AluSx4|SINE|Alu	-4361	NM_001190328	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
109792	chr19	1149621	1150280	+	0	NA	intron (NM_014963, intron 2 of 31)	intron (NM_014963, intron 2 of 31)	-17729	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
85353	chr16	50213671	50214430	+	0	NA	intron (NM_001040284, intron 3 of 12)	intron (NM_001040284, intron 3 of 12)	-52501	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
19724	chr1	181104571	181106400	+	0	NA	Intergenic	CpG	16785	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
76	chr1	290421	291650	+	0	NA	Intergenic	L1ME3E|LINE|L1	-84438	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
161885	chr3	45944821	45945700	+	0	NA	intron (NM_006564, intron 1 of 1)	intron (NM_006564, intron 1 of 1)	1796	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
196368	chr6	43243071	43244430	+	0	NA	intron (NM_032538, intron 1 of 14)	intron (NM_032538, intron 1 of 14)	269	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
190187	chr5	178205101	178205900	+	0	NA	intron (NM_031266, intron 2 of 7)	CpG-22897	967	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
120280	chr19	43437271	43437430	+	0	NA	Intergenic	LTR13A|LTR|ERVK	22460	NM_001130011	83639		NM_031451	ENSG00000131126	TEX101	CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP	testis expressed 101	protein-coding
2543	chr1	9727471	9727630	+	0	NA	3' UTR (NM_005026, exon 24 of 24)	3' UTR (NM_005026, exon 24 of 24)	36083	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
150575	chr21	43170001	43170400	+	0	NA	promoter-TSS (NM_001363766).2	promoter-TSS (NM_001363766).2	-36	NM_001320719	102724652		NM_001314050	ENSG00000276076	LOC102724652	CRYAA|CRYAA2	crystallin alpha A2	protein-coding
127052	chr2	37243421	37244280	+	0	NA	intron (NR_146401, intron 6 of 9)	intron (NR_146401, intron 6 of 9)	12192	NR_146404	55471		NM_018607	ENSG00000003509	NDUFAF7	C2orf56|MidA|PRO1853	NADH:ubiquinone oxidoreductase complex assembly factor 7	protein-coding
83499	chr16	27428271	27428780	+	0	NA	intron (NM_021798, intron 1 of 8)	intron (NM_021798, intron 1 of 8)	1254	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
216428	chr8	19426171	19426530	+	0	NA	intron (NR_148900, intron 5 of 9)	intron (NR_148900, intron 5 of 9)	112374	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
33172	chr10	112981421	112981900	+	0	NA	intron (NM_001363501, intron 4 of 13)	intron (NM_001363501, intron 4 of 13)	31410	NM_001363501	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
168815	chr3	152220751	152221050	+	0	NA	Intergenic	Intergenic	-15471	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
126799	chr2	30361551	30362700	+	0	NA	Intergenic	L2b|LINE|L2	15479	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
60305	chr13	40646051	40646350	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	20441	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
80887	chr16	3665071	3665880	+	0	NA	intron (NM_016292, intron 12 of 17)	intron (NM_016292, intron 12 of 17)	10771	NM_001351825	1773		NM_005223	ENSG00000213918	DNASE1	DNL1|DRNI	deoxyribonuclease 1	protein-coding
210257	chr7	99397151	99397900	+	0	NA	intron (NM_014891, intron 5 of 5)	intron (NM_014891, intron 5 of 5)	11072	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
21678	chr1	206710421	206710830	+	0	NA	intron (NM_032960, intron 1 of 9)	Tigger6a|DNA|TcMar-Tigger	25720	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
98004	chr17	45310201	45310980	+	0	NA	intron (NM_003954, intron 1 of 15)	intron (NM_003954, intron 1 of 15)	6430	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
189302	chr5	172130301	172130500	+	0	NA	intron (NM_005990, intron 2 of 18)	AluSx1|SINE|Alu	57824	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
8879	chr1	43647371	43647530	+	0	NA	Intergenic	L1ME3A|LINE|L1	-2699	NM_014663	9682		NM_014663	ENSG00000066135	KDM4A	JHDM3A|JMJD2|JMJD2A|TDRD14A	lysine demethylase 4A	protein-coding
47593	chr12	4849101	4849300	+	0	NA	intron (NM_002235, intron 1 of 1)	intron (NM_002235, intron 1 of 1)	40024	NM_002235	3742		NM_002235	ENSG00000151079	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel subfamily A member 6	protein-coding
99540	chr17	50361701	50362530	+	0	NA	TTS (NR_110010)	TTS (NR_110010)	11069	NM_016504	51264		NM_016504	ENSG00000108826	MRPL27	L27mt|bL27m	mitochondrial ribosomal protein L27	protein-coding
182779	chr5	68404821	68405280	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	112473	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
112760	chr19	7407821	7408080	+	0	NA	intron (NM_015318, intron 1 of 20)	AluY|SINE|Alu	12805	NM_015318	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
140596	chr2	233385071	233387030	+	0	NA	intron (NM_152879, intron 1 of 29)	intron (NM_152879, intron 1 of 29)	-2104	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
142410	chr20	3887021	3887380	+	0	NA	Intergenic	AluSz|SINE|Alu	-1581	NM_024960	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
107103	chr18	35055001	35055880	+	0	NA	intron (NR_046177, intron 1 of 6)	MLT1C|LTR|ERVL-MaLR	14027	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
134504	chr2	143345821	143346280	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	216631	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
104661	chr17	81483991	81485080	+	0	NA	Intergenic	CpG	28264	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
206194	chr7	28182051	28182430	+	0	NA	intron (NR_034097, intron 1 of 3)	intron (NR_034097, intron 1 of 3)	-1445	NM_175061	221895		NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
31797	chr10	98390901	98391710	+	0	NA	intron (NM_032709, intron 10 of 15)	L2c|LINE|L2	4002	NR_031619	100302133		NR_031619	ENSG00000284415	MIR1287	MIRN1287|hsa-mir-1287|mir-1287	microRNA 1287	ncRNA
59154	chr13	21576371	21576730	+	0	NA	intron (NM_152726, intron 1 of 11)	intron (NM_152726, intron 1 of 11)	27620	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
229044	chr9	114331071	114331430	+	0	NA	intron (NM_000608, intron 3 of 5)	intron (NM_000608, intron 3 of 5)	1381	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
141693	chr2	241815921	241816550	+	0	NA	exon (NM_001167600, exon 4 of 4)	exon (NM_001167600, exon 4 of 4)	4839	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
211959	chr7	112494121	112494380	+	0	NA	Intergenic	Intergenic	13259	NM_182597	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
180498	chr5	14223501	14223700	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	80258	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
96047	chr17	39463171	39463630	+	0	NA	intron (NM_016507, intron 1 of 13)	intron (NM_016507, intron 1 of 13)	1914	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
110830	chr19	2491921	2492180	+	0	NA	Intergenic	AluY|SINE|Alu	15923	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
29740	chr10	72126251	72126500	+	0	NA	intron (NM_001369102, intron 10 of 11)	intron (NM_001369102, intron 10 of 11)	-37343	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
7084	chr1	32041801	32042200	+	0	NA	intron (NR_073498, intron 8 of 8)	intron (NR_073498, intron 8 of 8)	28132	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
4667	chr1	22433171	22433330	+	0	NA	Intergenic	AluY|SINE|Alu	-18601	NM_014870	9923		NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
81334	chr16	4747871	4748030	+	0	NA	TTS (NM_021646)	TTS (NM_021646)	13413	NM_139170	146562		NM_139170	ENSG00000166246	DNAAF8	C16orf71|Daap1	dynein axonemal assembly factor 8	protein-coding
214089	chr7	143620111	143623000	+	0	NA	promoter-TSS (NM_001365430)	promoter-TSS (NM_001365430)	88	NM_173678	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
157542	chr22	45502701	45503500	+	0	NA	intron (NM_006486, intron 1 of 16)	CpG	217	NM_006486	2192		NM_001996	ENSG00000077942	FBLN1	FBLN|FIBL1	fibulin 1	protein-coding
12409	chr1	101330701	101331100	+	0	NA	intron (NR_126402, intron 1 of 4)	L2b|LINE|L2	7063	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
152411	chr22	20564151	20564750	+	0	NA	exon (NM_001293237, exon 6 of 17)	exon (NM_001293237, exon 6 of 17)	56403	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
200016	chr6	129501601	129501800	+	0	NA	intron (NM_000426, intron 58 of 64)	intron (NM_000426, intron 58 of 64)	208477	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
112491	chr19	6429471	6430580	+	0	NA	exon (NM_001321298, exon 4 of 8)	exon (NM_001321298, exon 4 of 8)	3738	NR_135612	284427		NM_173637	ENSG00000181240	SLC25A41	APC4|SCaMC-3L	solute carrier family 25 member 41	protein-coding
211609	chr7	105878101	105878300	+	0	NA	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-1601	NM_001385596	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
232003	chr9	133354471	133354630	+	0	NA	intron (NM_001280787, intron 3 of 7)	intron (NM_001280787, intron 3 of 7)	1935	NM_001280787	6834		NM_003172	ENSG00000148290	SURF1	CMT4K|MC4DN1|SHY1	SURF1 cytochrome c oxidase assembly factor	protein-coding
109596	chr19	924571	926400	+	0	NA	promoter-TSS (NM_005224)	promoter-TSS (NM_005224)	-550	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
141794	chr20	259101	259300	+	0	NA	exon (NM_207469, exon 2 of 2)	exon (NM_207469, exon 2 of 2)	1476	NM_207469	400830		NM_207469	ENSG00000186458	DEFB132	BD-32|DEFB-32|DEFB32|HEL-75|KFLL827|UNQ827	defensin beta 132	protein-coding
193316	chr6	30113021	30113680	+	0	NA	promoter-TSS (NM_007028).3	promoter-TSS (NM_007028).3	-260	NM_007028	11074		NM_007028	ENSG00000204616	TRIM31	C6orf13|HCG1|HCGI|RNF	tripartite motif containing 31	protein-coding
101260	chr17	66313721	66314200	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	11347	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
151464	chr21	46209221	46209480	+	0	NA	intron (NM_001145437, intron 12 of 20)	intron (NM_001145437, intron 12 of 20)	-15191	NR_145780	109623452		NR_145780		SNORD159	-	small nucleolar RNA, C/D box 159	snoRNA
28358	chr10	47153001	47153230	+	0	NA	Intergenic	Intergenic	-147082	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
66365	chr14	61469351	61469800	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	100619	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
185184	chr5	119365251	119365600	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	9406	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
111052	chr19	3107671	3107830	+	0	NA	intron (NM_002067, intron 1 of 6)	MER20|DNA|hAT-Charlie	13388	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
83563	chr16	28099551	28099850	+	0	NA	intron (NM_001270940, intron 24 of 24)	MIRb|SINE|MIR	-35986	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
121332	chr19	46780871	46781030	+	0	NA	intron (NM_005628, intron 4 of 7)	AluSz6|SINE|Alu	3864	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
236242	chrX	65739771	65740180	+	0	NA	3' UTR (NM_002444, exon 13 of 13)	3' UTR (NM_002444, exon 13 of 13)	72321	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
45912	chr11	120660251	120660350	+	0	NA	5' UTR (NM_014619, exon 3 of 21)	5' UTR (NM_014619, exon 3 of 21)	95864	NM_001282470	2900		NM_014619	ENSG00000149403	GRIK4	EAA1|GRIK|GluK4|GluK4-2|KA1	glutamate ionotropic receptor kainate type subunit 4	protein-coding
118135	chr19	34973121	34974130	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-9396	NM_175872	126375		NM_175872	ENSG00000180884	ZNF792	-	zinc finger protein 792	protein-coding
79002	chr15	101980751	101981100	+	0	NA	Intergenic	(GGTTAG)n|Simple_repeat|Simple_repeat	-1832	NR_034090	100288486		NR_034090	ENSG00000290824	DDX11L9	-	DEAD/H-box helicase 11 like 9 (pseudogene)	pseudo
230305	chr9	127954751	127954860	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	-4091	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
112517	chr19	6489101	6490480	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-8003	NM_024898	79958		NM_024898	ENSG00000205744	DENND1C	FAM31C	DENN domain containing 1C	protein-coding
152597	chr22	21326221	21326600	+	0	NA	intron (NR_136559, intron 1 of 11)	HSATI|Satellite|Satellite	226	NR_136559	100996335		NR_136559	ENSG00000206142	FAM230H	-	family with sequence similarity 230 member H	ncRNA
114982	chr19	14033951	14034130	+	0	NA	intron (NM_004843, intron 2 of 13)	MIR|SINE|MIR	2278	NM_004843	9466		NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
78050	chr15	90084821	90085280	+	0	NA	exon (NM_001289910, exon 9 of 11)	exon (NM_001289910, exon 9 of 11)	-2843	NR_146321	109729181		NR_146321	ENSG00000259291	ZNF710-AS1	-	ZNF710 antisense RNA 1	ncRNA
129323	chr2	68726671	68727650	+	0	NA	Intergenic	Intergenic	-7651	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
104805	chr17	81792751	81793350	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11100	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
106944	chr18	27854301	27854500	+	0	NA	Intergenic	L1PA13|LINE|L1	182241	NM_001308176	1000		NM_001792	ENSG00000170558	CDH2	ACOGS|ADHD8|ARVD14|CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
160228	chr3	23952351	23952650	+	0	NA	intron (NM_001145425, intron 1 of 7)	AluSx1|SINE|Alu	-5938	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
66390	chr14	61494451	61495030	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	75454	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
47469	chr12	3885451	3886050	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-12302	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
218707	chr8	58594951	58595350	+	0	NA	intron (NM_003580, intron 22 of 30)	intron (NM_003580, intron 22 of 30)	41889	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
197553	chr6	79233121	79234100	+	0	NA	promoter-TSS (NR_040671)	promoter-TSS (NR_040671)	-64	NR_040671	100288198		NR_040671	ENSG00000270362	HMGN3-AS1	-	HMGN3 antisense RNA 1	ncRNA
166457	chr3	114214601	114216700	+	0	NA	Intergenic	L2a|LINE|L2	-16243	NM_001282563	1814		NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
65102	chr14	41689751	41689850	+	0	NA	intron (NM_001346173, intron 1 of 4)	AluYi6|SINE|Alu	82944	NM_001330106	145581		NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
154293	chr22	31751801	31752000	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1768	NM_173566	253143		NM_173566	ENSG00000183530	PRR14L	C22orf30	proline rich 14 like	protein-coding
114213	chr19	11439471	11439800	+	0	NA	intron (NM_001001329, intron 5 of 17)	AluSx4|SINE|Alu	-3853	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
183824	chr5	83564121	83564380	+	0	NA	intron (NM_001164097, intron 11 of 13)	intron (NM_001164097, intron 11 of 13)	-1936	NR_136215	105379054		NR_136215	ENSG00000249835	VCAN-AS1	-	VCAN antisense RNA 1	ncRNA
199140	chr6	111719621	111720200	+	0	NA	exon (NM_153048, exon 2 of 11)	exon (NM_153048, exon 2 of 11)	39221	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
37174	chr11	13964071	13964230	+	0	NA	intron (NM_006108, intron 1 of 15)	CpG	1427	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
53879	chr12	70263851	70263950	+	0	NA	intron (NR_037615, intron 1 of 16)	L1M4b|LINE|L1	20186	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
129247	chr2	68366061	68366650	+	0	NA	intron (NM_002664, intron 1 of 8)	intron (NM_002664, intron 1 of 8)	1073	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
159306	chr3	12999401	12999800	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-12499	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
81653	chr16	10953771	10954780	+	0	NA	intron (NM_001243403, intron 1 of 20)	intron (NM_001243403, intron 1 of 20)	9711	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
109568	chr19	892531	893850	+	0	NA	promoter-TSS (NM_005481)	promoter-TSS (NM_005481)	-3	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
75070	chr15	64333101	64334150	+	0	NA	intron (NM_001329606, intron 1 of 11)	L1PBa|LINE|L1	22548	NM_001329606	53944		NM_022048	ENSG00000169118	CSNK1G1	CK1gamma1	casein kinase 1 gamma 1	protein-coding
106022	chr18	8240651	8240750	+	0	NA	intron (NM_001378146, intron 10 of 29)	GA-rich|Low_complexity|Low_complexity	126334	NR_024419	100192426		NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA
145535	chr20	44136051	44136350	+	0	NA	intron (NM_020433, intron 2 of 5)	intron (NM_020433, intron 2 of 5)	50988	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
28196	chr10	44878571	44879330	+	0	NA	intron (NR_033842, intron 2 of 7)	MIRb|SINE|MIR	-32366	NM_001345926	643236		NM_001123376	ENSG00000187783	TMEM72	C10orf127|KSP37	transmembrane protein 72	protein-coding
63687	chr14	21087001	21088350	+	0	NA	intron (NM_001278529, intron 21 of 23)	intron (NM_001278529, intron 21 of 23)	10980	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
232309	chr9	134649051	134649350	+	0	NA	TTS (NR_138049)	TTS (NR_138049)	3643	NR_138049	414316		NR_138049		COL5A1-AS1	C9orf104|bA54A22.4	COL5A1 antisense RNA 1	ncRNA
102307	chr17	75352101	75352300	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	53478	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
77515	chr15	84681871	84682530	+	0	NA	intron (NM_001271921, intron 2 of 4)	L1MC5|LINE|L1	-24001	NM_021077	4828		NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
211731	chr7	107125971	107127200	+	0	NA	intron (NM_002736, intron 3 of 10)	intron (NM_002736, intron 3 of 10)	-42376	NM_001244262	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
126777	chr2	30258721	30258980	+	0	NA	3' UTR (NM_030915, exon 3 of 3)	3' UTR (NM_030915, exon 3 of 3)	27316	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
69170	chr14	92610471	92610630	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	34316	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
227812	chr9	93236601	93237080	+	0	NA	intron (NM_001282394, intron 4 of 29)	intron (NM_001282394, intron 4 of 29)	51910	NM_006648	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
25378	chr10	6482601	6483380	+	0	NA	intron (NM_001282644, intron 11 of 17)	THE1B|LTR|ERVL-MaLR	97286	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
90418	chr17	1342551	1343330	+	0	NA	Intergenic	AluSq4|SINE|Alu	57282	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
123719	chr19	55047221	55048430	+	0	NA	intron (NM_001145971, intron 5 of 6).10	MER5A1|DNA|hAT-Charlie	-9561	NM_001256017	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
73676	chr15	44737851	44738680	+	0	NA	intron (NM_080745, intron 1 of 5).2	AluSx|SINE|Alu	1737	NM_001301145	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
182797	chr5	68730721	68730980	+	0	NA	Intergenic	Intergenic	299077	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
94709	chr17	30706571	30706950	+	0	NA	Intergenic	Intergenic	-2848	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
129029	chr2	64978921	64979180	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-9429	NM_001193493	6509		NM_003038	ENSG00000115902	SLC1A4	ASCT1|SATT|SPATCCM	solute carrier family 1 member 4	protein-coding
134165	chr2	134246621	134247280	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-7122	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
206929	chr7	38228321	38228880	+	0	NA	intron (NM_032016, intron 7 of 8)	intron (NM_032016, intron 7 of 8)	45047	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
136927	chr2	189792851	189793150	+	0	NA	intron (NM_001289409, intron 2 of 10)	AluSx1|SINE|Alu	8550	NM_001128143	5378		NM_000534	ENSG00000064933	PMS1	HNPCC3|MLH2|PMSL1|hPMS1	PMS1 homolog 1, mismatch repair system component	protein-coding
56012	chr12	110348101	110348500	+	0	NA	3' UTR (NM_170665, exon 20 of 20)	3' UTR (NM_170665, exon 20 of 20)	53649	NM_001385210	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
213900	chr7	142476801	142477780	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	2763	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
140568	chr2	233326171	233326330	+	0	NA	intron (NM_000541, intron 6 of 15)	MER102b|DNA|hAT-Charlie	18434	NM_000541	6295		NM_000541	ENSG00000130561	SAG	RP47|RP96|S-AG	S-antigen visual arrestin	protein-coding
186152	chr5	134171921	134172280	+	0	NA	intron (NM_170679, intron 2 of 5)	intron (NM_170679, intron 2 of 5)	4850	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
123687	chr19	55011121	55011500	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	26954	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
175843	chr4	78721071	78721530	+	0	NA	Intergenic	Intergenic	-55050	NM_017593	55589		NM_017593	ENSG00000138756	BMP2K	BIKE|HRIHFB2017	BMP2 inducible kinase	protein-coding
137863	chr2	200827171	200827530	+	0	NA	TTS (NM_001321693)	TTS (NM_001321693)	14964	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
187742	chr5	143605221	143605700	+	0	NA	Intergenic	Intergenic	-74400	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
221933	chr8	129879451	129880000	+	0	NA	intron (NM_001353257, intron 2 of 11)	intron (NM_001353257, intron 2 of 11)	60086	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
98192	chr17	46117251	46117550	+	0	NA	intron (NM_015443, intron 2 of 14).2	L2a|LINE|L2	75382	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
25667	chr10	8367601	8368080	+	0	NA	Intergenic	L1PA12|LINE|L1	-99535	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
228232	chr9	97917571	97917880	+	0	NA	intron (NM_001371657, intron 1 of 5)	AluSz6|SINE|Alu	4456	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
196841	chr6	47309021	47310200	+	0	NA	5' UTR (NM_014452, exon 1 of 6)	5' UTR (NM_014452, exon 1 of 6)	295	NM_014452	27242		NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
202231	chr6	156824871	156825030	+	0	NA	intron (NM_001371656, intron 2 of 20)	AluSx1|SINE|Alu	-45219	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
113156	chr19	8351501	8351900	+	0	NA	Intergenic	L2b|LINE|L2	-8438	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
229922	chr9	126624901	126625200	+	0	NA	intron (NM_001174147, intron 2 of 7)	CpG	11122	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
92075	chr17	7522821	7523480	+	0	NA	Intergenic	MER61B|LTR|ERV1	-25908	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
214383	chr7	149773001	149773950	+	0	NA	5' UTR (NM_001329856, exon 1 of 5)	5' UTR (NM_001329856, exon 1 of 5)	113	NM_207336	168544		NM_207336	ENSG00000181444	ZNF467	EZI|Zfp467	zinc finger protein 467	protein-coding
180466	chr5	10759871	10761850	+	0	NA	intron (NM_001291963, intron 1 of 2)	CpG	374	NM_004394	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
213650	chr7	139768401	139769100	+	0	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	9248	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
210814	chr7	100878251	100878900	+	0	NA	intron (NM_015908, intron 2 of 19)	intron (NM_015908, intron 2 of 19)	3472	NM_001128852	51593		NM_015908	ENSG00000087087	SRRT	ARS2|ASR2|serrate	serrate, RNA effector molecule	protein-coding
208360	chr7	66588651	66589330	+	0	NA	intron (NR_111977, intron 1 of 5)	intron (NR_111977, intron 1 of 5)	3417	NR_111978	493754		NR_002933	ENSG00000291136	RABGEF1P1	GS1-124K5.11	RABGEF1 pseudogene 1	pseudo
62648	chr13	101706571	101706830	+	0	NA	intron (NM_004791, intron 8 of 10)	intron (NM_004791, intron 8 of 10)	210245	NM_004115	2259		NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|NYS4|SCA27|SCA27A|SCA27B	fibroblast growth factor 14	protein-coding
42759	chr11	72727471	72727630	+	0	NA	intron (NM_001040118, intron 2 of 34)	intron (NM_001040118, intron 2 of 34)	-5192	NM_001135190	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
44682	chr11	111229521	111229900	+	0	NA	Intergenic	Intergenic	-16015	NM_198498	341032		NM_198498	ENSG00000150750	POU2AF2	C11orf53|OCA-T1|OCAT1	POU class 2 homeobox associating factor 2	protein-coding
77134	chr15	79439151	79439250	+	0	NA	intron (NM_015206, intron 1 of 3)	intron (NM_015206, intron 1 of 3)	6864	NM_015206	23251		NM_015206	ENSG00000169330	MINAR1	KIAA1024|UBTOR	membrane integral NOTCH2 associated receptor 1	protein-coding
182542	chr5	65718051	65718350	+	0	NA	intron (NM_019072, intron 2 of 10)	MER20|DNA|hAT-Charlie	3909	NM_019072	54557		NM_019072	ENSG00000197860	SGTB	SGT2	small glutamine rich tetratricopeptide repeat co-chaperone beta	protein-coding
99815	chr17	51820201	51820600	+	0	NA	intron (NM_020178, intron 3 of 8)	intron (NM_020178, intron 3 of 8)	338314	NM_020178	56934		NM_020178	ENSG00000154975	CA10	CA-RPX|CARPX|HUCEP-15	carbonic anhydrase 10	protein-coding
187411	chr5	141958851	141959350	+	0	NA	promoter-TSS (NM_016580)	promoter-TSS (NM_016580)	-898	NM_016580	51294		NM_016580	ENSG00000113555	PCDH12	DMJDS1|VE-cadherin-2|VECAD2	protocadherin 12	protein-coding
154415	chr22	35333671	35333830	+	0	NA	intron (NR_156428, intron 9 of 13)	intron (NR_156428, intron 9 of 13)	-1890	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
176640	chr4	99893001	99893200	+	0	NA	intron (NR_024170, intron 1 of 5)	AluJr|SINE|Alu	1327	NM_021970	8649		NM_021970	ENSG00000109270	LAMTOR3	MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding
114495	chr19	12769371	12770200	+	0	NA	intron (NM_013312, intron 11 of 22)	intron (NM_013312, intron 11 of 22)	5767	NM_001100176	29911		NM_013312	ENSG00000095066	HOOK2	HK2	hook microtubule tethering protein 2	protein-coding
115093	chr19	14247271	14247700	+	0	NA	Intergenic	Intergenic	-41316	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
16518	chr1	154931671	154932030	+	0	NA	intron (NM_006556, intron 2 of 4)	intron (NM_006556, intron 2 of 4)	4869	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
155013	chr22	37412701	37413100	+	0	NA	intron (NM_052906, intron 2 of 2)	intron (NM_052906, intron 2 of 2)	14570	NR_110512	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
55559	chr12	106073301	106073700	+	0	NA	intron (NM_014840, intron 4 of 6)	MIRc|SINE|MIR	66533	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
51551	chr12	52542351	52542450	+	0	NA	Intergenic	Intergenic	10745	NM_033448	112802		NM_033448	ENSG00000139648	KRT71	HYPT13|K6IRS1|KRT6IRS|KRT6IRS1	keratin 71	protein-coding
62426	chr13	99305651	99306680	+	0	NA	intron (NM_004951, intron 1 of 1)	AluSx|SINE|Alu	1234	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
175221	chr4	56906071	56906230	+	0	NA	Intergenic	Intergenic	-1750	NM_005612	5978		NM_005612	ENSG00000084093	REST	DFNA27|GINGF5|HGF5|NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
130533	chr2	85641951	85642250	+	0	NA	intron (NM_001256726, intron 10 of 11)	MIR3|SINE|MIR	25914	NM_001256725	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
66020	chr14	58268921	58269630	+	0	NA	intron (NR_038123, intron 7 of 9)	intron (NR_038123, intron 7 of 9)	-18758	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
163928	chr3	52690021	52690280	+	0	NA	promoter-TSS (NR_003687)	promoter-TSS (NR_003687)	-588	NR_003687	100113381		NR_003687	ENSG00000238862	SNORD19B	-	small nucleolar RNA, C/D box 19B	snoRNA
196223	chr6	42789651	42790250	+	0	NA	intron (NR_134654, intron 1 of 1)	intron (NR_134654, intron 1 of 1)	6454	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
93268	chr17	18041301	18041830	+	0	NA	intron (NM_024052, intron 1 of 5)	intron (NM_024052, intron 1 of 5)	2157	NM_024052	79018		NM_024052	ENSG00000141034	GID4	C17orf39|VID2|VID24	GID complex subunit 4 homolog	protein-coding
16382	chr1	154398621	154399080	+	0	NA	Intergenic	MER6A|DNA|TcMar-Tigger	-6493	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
9804	chr1	53754671	53754900	+	0	NA	Intergenic	Intergenic	-15621	NM_001367484	148979		NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
64299	chr14	23558671	23558980	+	0	NA	TTS (NM_003917)	TTS (NM_003917)	-2272	NR_110555	102724814		NR_110555	ENSG00000258727	AP1G2-AS1	-	AP1G2 antisense RNA 1	ncRNA
42279	chr11	68297351	68298680	+	0	NA	Intergenic	Intergenic	-14576	NM_001291902	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
231130	chr9	129839671	129840850	+	0	NA	intron (NM_001008563, intron 1 of 25)	intron (NM_001008563, intron 1 of 25)	4802	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
151008	chr21	44449651	44449950	+	0	NA	Intergenic	Intergenic	5484	NR_047476	100861510		NR_047476	ENSG00000229356	LRRC3-DT	LRRC3-AS1	LRRC3 divergent transcript	ncRNA
196347	chr6	43184301	43184730	+	0	NA	exon (NM_015089, exon 2 of 41)	exon (NM_015089, exon 2 of 41)	2319	NM_015089	23113		NM_015089	ENSG00000112659	CUL9	H7AP1|PARC	cullin 9	protein-coding
184322	chr5	96930171	96930530	+	0	NA	Intergenic	MER72|LTR|ERV1	-5730	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
30059	chr10	73851571	73851730	+	0	NA	intron (NR_160263, intron 4 of 21)	intron (NR_160263, intron 4 of 21)	22905	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
32691	chr10	103970951	103971280	+	0	NA	intron (NM_014720, intron 1 of 18)	intron (NM_014720, intron 1 of 18)	3975	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
131636	chr2	97092601	97092800	+	0	NA	intron (NM_001320848, intron 1 of 8)	AluSx1|SINE|Alu	2182	NM_199336	151313		NM_199336	ENSG00000144199	FAHD2B	-	fumarylacetoacetate hydrolase domain containing 2B	protein-coding
147838	chr20	62778401	62778650	+	0	NA	Intergenic	Intergenic	-1669	NR_046225	100652730		NR_046224	ENSG00000228705	LINC00659	-	long intergenic non-protein coding RNA 659	ncRNA
48677	chr12	10558071	10558580	+	0	NA	non-coding (NR_146455, exon 2 of 2)	non-coding (NR_146455, exon 2 of 2)	4946	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
102665	chr17	76082721	76083630	+	0	NA	TTS (NM_180990)	TTS (NM_180990)	3993	NM_180990	353174		NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding
154688	chr22	36376601	36378250	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	10542	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
14793	chr1	146118171	146118650	+	0	NA	exon (NM_001039703, exon 24 of 86)	exon (NM_001039703, exon 24 of 86)	26394	NM_001302371	100132406		NM_001039703	ENSG00000271425	NBPF10	AB6|AG1|NBPF9	NBPF member 10	protein-coding
145652	chr20	44909651	44910650	+	0	NA	promoter-TSS (NR_134983)	promoter-TSS (NR_134983)	90	NR_134987	80336		NM_001124756	ENSG00000101104	PABPC1L	C20orf119|EPAB|PABPC1L1|dJ1069P2.3	poly(A) binding protein cytoplasmic 1 like	protein-coding
179544	chr4	185040651	185040750	+	0	NA	Intergenic	Intergenic	-11196	NR_147059	101928877		NR_147059	ENSG00000250754	LINC02436	-	long intergenic non-protein coding RNA 2436	ncRNA
61624	chr13	73741001	73741600	+	0	NA	intron (NM_007249, intron 6 of 7)	intron (NM_007249, intron 6 of 7)	177056	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
224427	chr9	15293421	15294130	+	0	NA	intron (NM_152574, intron 1 of 19)	MER57B1|LTR|ERV1	13585	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
189781	chr5	176679501	176679900	+	0	NA	Intergenic	Intergenic	32216	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
76864	chr15	77910271	77911050	+	0	NA	Intergenic	Intergenic	16186	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
128802	chr2	62409951	62410250	+	0	NA	Intergenic	Intergenic	96095	NM_198276	200728		NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
48368	chr12	9434771	9435000	+	0	NA	intron (NR_033399, intron 5 of 26)	intron (NR_033399, intron 5 of 26)	13287	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
102801	chr17	76397651	76398550	+	0	NA	intron (NM_022066, intron 12 of 17)	intron (NM_022066, intron 12 of 17)	12822	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
141288	chr2	240200451	240200750	+	0	NA	Intergenic	Intergenic	-59942	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
12521	chr1	108458721	108459080	+	0	NA	intron (NM_001143988, intron 8 of 14)	intron (NM_001143988, intron 8 of 14)	8557	NM_001143988	653149		NM_001143987	ENSG00000186086	NBPF6	-	NBPF member 6	protein-coding
178762	chr4	153318701	153319030	+	0	NA	intron (NM_001375515, intron 8 of 11)	intron (NM_001375515, intron 8 of 11)	-10054	NR_001562	303		NR_001562		ANXA2P1	ANX2L1|ANX2P1|LPC2A	annexin A2 pseudogene 1	pseudo
90850	chr17	2360971	2361480	+	0	NA	intron (NM_001346700, intron 2 of 22)	intron (NM_001346700, intron 2 of 22)	23724	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
27459	chr10	32002121	32002380	+	0	NA	Intergenic	HAL1|LINE|L1	54175	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
145902	chr20	45964871	45965030	+	0	NA	intron (NM_022095, intron 7 of 27)	AluSq|SINE|Alu	7253	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
208736	chr7	73437551	73438180	+	0	NA	Intergenic	Intergenic	4087	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
187597	chr5	142888151	142888680	+	0	NA	intron (NR_146198, intron 5 of 22)	MIR3|SINE|MIR	-19505	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
176996	chr4	105267221	105267480	+	0	NA	intron (NM_001127208, intron 8 of 10)	L1ME1|LINE|L1	85531	NR_126420	104384744		NR_126420		TET2-AS1	-	TET2 antisense RNA 1	ncRNA
235401	chrX	45195851	45195950	+	0	NA	intron (NM_176819, intron 1 of 4)	L2c|LINE|L2	4976	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
34959	chr11	489971	491050	+	0	NA	exon (NM_001329544, exon 12 of 12)	exon (NM_001329544, exon 12 of 12)	16258	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
21877	chr1	207751711	207753200	+	0	NA	intron (NM_172356, intron 1 of 10)	CpG	401	NM_172355	4179		NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding
80688	chr16	3048051	3048250	+	0	NA	intron (NM_022468, intron 2 of 9)	AluJr|SINE|Alu	1589	NM_022468	64386		NM_004142	ENSG00000008516	MMP25	MMP-25|MMP20|MMP20A|MMPL1|MT-MMP 6|MT-MMP6|MT6-MMP|MT6MMP|MTMMP6	matrix metallopeptidase 25	protein-coding
148218	chr20	63580421	63581280	+	0	NA	Intergenic	MER21B|LTR|ERVL	-6611	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
147467	chr20	59055221	59055500	+	0	NA	Intergenic	Intergenic	-12514	NR_037929	100533975		NR_037929		SLMO2-ATP5E	-	SLMO2-ATP5E readthrough	ncRNA
210200	chr7	99026271	99026630	+	0	NA	TTS (NM_001199847)	TTS (NM_001199847)	13285	NR_110102	101927550		NR_110102		LOC101927550	-	uncharacterized LOC101927550	ncRNA
10237	chr1	63329601	63330350	+	0	NA	Intergenic	CpG	-2991	NR_106716	102464823		NR_106716	ENSG00000275836	MIR6068	hsa-mir-6068	microRNA 6068	ncRNA
157797	chr22	46776101	46776500	+	0	NA	intron (NM_001284305, intron 1 of 12)	intron (NM_001284305, intron 1 of 12)	2373	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
117717	chr19	29302221	29302900	+	0	NA	intron (NR_040029, intron 9 of 9)	intron (NR_040029, intron 9 of 9)	-89409	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
122056	chr19	48668851	48670330	+	0	NA	intron (NR_004401, intron 3 of 4)	intron (NR_004401, intron 3 of 4)	3427	NM_145807	126147		NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
133458	chr2	119753321	119753700	+	0	NA	Intergenic	Intergenic	-6412	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
216872	chr8	22630121	22631100	+	0	NA	intron (NM_001363046, intron 3 of 7)	intron (NM_001363046, intron 3 of 7)	11599	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
193537	chr6	30601271	30602130	+	0	NA	intron (NM_001376195, intron 19 of 19).6	intron (NM_001376195, intron 19 of 19).6	15543	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
91138	chr17	3739971	3740130	+	0	NA	intron (NM_002208, intron 19 of 30)	intron (NM_002208, intron 19 of 30)	16147	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
132161	chr2	101757921	101758430	+	0	NA	intron (NM_001384572, intron 1 of 29)	MER44A|DNA|TcMar-Tigger	59910	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
74123	chr15	55216771	55216930	+	0	NA	intron (NM_183236, intron 6 of 6)	intron (NM_183236, intron 6 of 6)	-19909	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
61977	chr13	79492151	79492650	+	0	NA	intron (NM_019080, intron 1 of 7)	intron (NM_019080, intron 1 of 7)	-11169	NR_046685	100874208		NR_046685	ENSG00000232132	NDFIP2-AS1	-	NDFIP2 antisense RNA 1	ncRNA
49533	chr12	26119421	26119680	+	0	NA	TTS (NM_030762)	TTS (NM_030762)	5487	NM_030762	79365		NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|FNSS1|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding
85018	chr16	31693321	31693780	+	0	NA	Intergenic	Intergenic	-7063	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
149580	chr21	33249271	33249830	+	0	NA	intron (NM_001385055, intron 6 of 9)	intron (NM_001385055, intron 6 of 9)	16710	NR_038974	100288432		NR_038974		IL10RB-DT	IFNAR2-AS1|IL10RB-AS1	IL10RB divergent transcript	ncRNA
112336	chr19	5916171	5916530	+	0	NA	TTS (NM_004058)	TTS (NM_004058)	2096	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
38946	chr11	47514471	47514630	+	0	NA	intron (NM_001376409, intron 1 of 15)	intron (NM_001376409, intron 1 of 15)	9281	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
146783	chr20	50918201	50918600	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-8609	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
95839	chr17	38813021	38813280	+	0	NA	intron (NM_017748, intron 3 of 9)	AluSx|SINE|Alu	12171	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
17686	chr1	157993001	157993700	+	0	NA	promoter-TSS (NM_001286349)	promoter-TSS (NM_001286349)	77	NM_001286349	55243		NM_018240	ENSG00000183853	KIRREL1	KIRREL|NEPH1|NPHS23	kirre like nephrin family adhesion molecule 1	protein-coding
91831	chr17	7190371	7190900	+	0	NA	non-coding (NR_135527, exon 21 of 21)	non-coding (NR_135527, exon 21 of 21)	-11071	NM_001197216	432		NM_001671	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
176968	chr4	103934171	103934400	+	0	NA	Intergenic	Intergenic	-214300	NM_001059	6870		NM_001059	ENSG00000169836	TACR3	HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL	tachykinin receptor 3	protein-coding
159581	chr3	15060821	15061080	+	0	NA	intron (NR_135246, intron 1 of 4)	intron (NR_135246, intron 1 of 4)	4365	NR_135247	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
143774	chr20	32417901	32418800	+	0	NA	intron (NM_015338, intron 3 of 11)	AluJb|SINE|Alu	59285	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
192753	chr6	26436721	26436980	+	0	NA	Intergenic	Intergenic	-3654	NM_197974	10384		NM_006994	ENSG00000111801	BTN3A3	BTF3|BTN3.3	butyrophilin subfamily 3 member A3	protein-coding
71986	chr15	25806071	25806230	+	0	NA	intron (NM_024490, intron 1 of 20)	Tigger2|DNA|TcMar-Tigger	42675	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
149669	chr21	33582751	33583050	+	0	NA	intron (NM_017613, intron 5 of 9)	MER1B|DNA|hAT-Charlie	5784	NM_017613	29980		NM_017613	ENSG00000159147	DONSON	B17|C21orf60|MIMIS|MISSLA	DNA replication fork stabilization factor DONSON	protein-coding
12670	chr1	109399251	109399630	+	0	NA	3' UTR (NM_002790, exon 9 of 9)	3' UTR (NM_002790, exon 9 of 9)	-1522	NM_002959	6272		NM_002959	ENSG00000134243	SORT1	Gp95|LDLCQ6|NT3|NTR3	sortilin 1	protein-coding
92493	chr17	8877101	8877500	+	0	NA	Intergenic	AluY|SINE|Alu	-9623	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
138184	chr2	202652801	202653200	+	0	NA	intron (NM_173511, intron 1 of 7)	AluJb|SINE|Alu	18031	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
146684	chr20	50522951	50523050	+	0	NA	intron (NM_001278618, intron 1 of 8)	AluSq2|SINE|Alu	12617	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
119487	chr19	40458301	40458900	+	0	NA	intron (NM_000713, intron 1 of 4)	intron (NM_000713, intron 1 of 4)	7145	NM_000713	645		NM_000713	ENSG00000090013	BLVRB	BVRB|FLR|HEL-S-10|SDR43U1	biliverdin reductase B	protein-coding
19841	chr1	182884071	182884230	+	0	NA	intron (NM_001357, intron 26 of 27)	AluSz|SINE|Alu	-44559	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
88863	chr16	87689401	87689800	+	0	NA	intron (NM_020655, intron 3 of 4)	CpG	76386	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
5959	chr1	26902301	26902500	+	0	NA	Intergenic	MER92B|LTR|ERV1	-1933	NM_022078	63906		NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
115399	chr19	15281151	15281750	+	0	NA	promoter-TSS (NM_058243)	promoter-TSS (NM_058243)	-999	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
192904	chr6	27592451	27593330	+	0	NA	Intergenic	tRNA-Met-i|tRNA|tRNA	-101145	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
155319	chr22	38210251	38210950	+	0	NA	intron (NM_001161573, intron 1 of 2)	L2a|LINE|L2	7580	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
204235	chr7	2542271	2544080	+	0	NA	intron (NM_001350627, intron 5 of 12)	(CTCCCAGC)n|Simple_repeat|Simple_repeat	12349	NR_146879	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
33636	chr10	119663171	119663330	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	11870	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
201183	chr6	143090421	143090900	+	0	NA	intron (NM_001366355, intron 1 of 4)	Tigger1|DNA|TcMar-Tigger	29771	NM_001366346	51390		NM_016108	ENSG00000146416	AIG1	AIG-1|dJ95L4.1	androgen induced 1	protein-coding
22538	chr1	222404751	222405050	+	0	NA	Intergenic	Intergenic	143204	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
54811	chr12	94653821	94654080	+	0	NA	Intergenic	L1ME3E|LINE|L1	-3393	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
53661	chr12	68374121	68375080	+	0	NA	Intergenic	LTR88a|LTR|Gypsy?	-42186	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
45657	chr11	119014851	119015480	+	0	NA	TTS (NM_001028).2	TTS (NM_001028).2	3178	NM_001028	6230		NM_001028	ENSG00000118181	RPS25	S25|eS25	ribosomal protein S25	protein-coding
203755	chr7	1171151	1172300	+	0	NA	Intergenic	LTR12F|LTR|ERV1	10940	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
50530	chr12	47884301	47884500	+	0	NA	intron (NM_000376, intron 1 of 9)	MIRb|SINE|MIR	20594	NM_001374661	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
207061	chr7	39737901	39738100	+	0	NA	intron (NR_026999, intron 1 of 11)	intron (NR_026999, intron 1 of 11)	4432	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
117560	chr19	21094721	21095180	+	0	NA	intron (NM_182515, intron 2 of 4)	L1PREC2|LINE|L1	12747	NM_182515	148206		NM_182515	ENSG00000160352	ZNF714	-	zinc finger protein 714	protein-coding
100580	chr17	63405621	63406080	+	0	NA	intron (NM_025185, intron 19 of 25)	intron (NM_025185, intron 19 of 25)	34417	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
210081	chr7	96837421	96838200	+	0	NA	Intergenic	Intergenic	-127919	NM_006304	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
208113	chr7	58287351	58287450	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	837223	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
48924	chr12	12684801	12685000	+	0	NA	intron (NM_006143, intron 2 of 3)	intron (NM_006143, intron 2 of 3)	11283	NM_006143	2842		NM_006143	ENSG00000183150	GPR19	-	G protein-coupled receptor 19	protein-coding
1437	chr1	2624001	2624200	+	0	NA	intron (NM_033467, intron 2 of 23)	L1MCc|LINE|L1	8916	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
191728	chr6	13700301	13700500	+	0	NA	intron (NM_005493, intron 1 of 13)	L2b|LINE|L2	11435	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
143673	chr20	32017771	32019450	+	0	NA	intron (NM_080625, intron 4 of 8)	intron (NM_080625, intron 4 of 8)	8172	NM_080625	140706		NM_080625	ENSG00000101331	CCM2L	C20orf160|dJ310O13.5	CCM2 like scaffold protein	protein-coding
192654	chr6	26180971	26181130	+	0	NA	Intergenic	Intergenic	-2711	NM_003523	8344		NM_003523	ENSG00000274290	H2BC6	H2B.h|H2B/h|H2BC10|H2BC4|H2BC7|H2BC8|H2BFH|HIST1H2BE|dJ221C16.8	H2B clustered histone 6	protein-coding
19148	chr1	171560871	171561400	+	0	NA	intron (NM_015172, intron 20 of 33)	intron (NM_015172, intron 20 of 33)	-58628	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
152742	chr22	21695901	21696300	+	0	NA	3' UTR (NM_001317996, exon 21 of 21)	3' UTR (NM_001317996, exon 21 of 21)	30088	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
131114	chr2	90291921	90292530	+	0	NA	Intergenic	(CCAAGCCAG)n|Simple_repeat|Simple_repeat	-654318	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
58579	chr12	132447071	132447400	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-42916	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
35030	chr11	564871	565350	+	0	NA	TTS (NR_038262)	TTS (NR_038262)	3088	NR_029623	406992		NR_029623	ENSG00000199038	MIR210	MIRN210|mir-210	microRNA 210	ncRNA
117689	chr19	28386551	28386650	+	0	NA	Intergenic	Intergenic	-220088	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
74788	chr15	63276921	63278600	+	0	NA	intron (NM_001145646, intron 1 of 4)	CpG	155	NM_031301	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
54118	chr12	76456851	76457530	+	0	NA	intron (NM_001319652, intron 5 of 25)	Tigger2b_Pri|DNA|TcMar-Tigger	-33905	NM_001319655	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
100669	chr17	63744921	63745180	+	0	NA	TTS (NM_020198)	TTS (NM_020198)	-3064	NM_001165970	92335		NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk	STE20 related adaptor alpha	protein-coding
230667	chr9	128710451	128710750	+	0	NA	intron (NM_001317926, intron 6 of 21)	AluSx|SINE|Alu	8097	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
75463	chr15	65870911	65871430	+	0	NA	intron (NM_004663, intron 1 of 4)	intron (NM_004663, intron 1 of 4)	1679	NM_001206836	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
229450	chr9	121558001	121558550	+	0	NA	Intergenic	Intergenic	-8827	NM_032552	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
22769	chr1	224408871	224409230	+	0	NA	intron (NM_001115113, intron 7 of 13)	intron (NM_001115113, intron 7 of 13)	-10739	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
130281	chr2	84879521	84880160	+	0	NA	intron (NM_001307978, intron 1 of 4)	intron (NM_001307978, intron 1 of 4)	1244	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
206467	chr7	32963901	32964200	+	0	NA	intron (NM_001284341, intron 2 of 10)	intron (NM_001284341, intron 2 of 10)	6610	NM_007270	11328		NM_007270	ENSG00000122642	FKBP9	FKBP60|FKBP63|PPIase	FKBP prolyl isomerase 9	protein-coding
14244	chr1	143238701	143239030	+	0	NA	Intergenic	Intergenic	183727	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
31549	chr10	97072701	97073200	+	0	NA	intron (NM_003061, intron 4 of 36)	MIRc|SINE|MIR	-29806	NR_038330	100505540		NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
183373	chr5	77277601	77277800	+	0	NA	intron (NM_001029853, intron 1 of 20)	intron (NM_001029853, intron 1 of 20)	67020	NM_003719	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
35541	chr11	1593771	1594130	+	0	NA	intron (NR_021489, intron 1 of 1).3	AluJb|SINE|Alu	4344	NM_001004325	440021		NM_001004325	ENSG00000205867	KRTAP5-2	KRTAP5-8|KRTAP5.2	keratin associated protein 5-2	protein-coding
85226	chr16	47612401	47612800	+	0	NA	intron (NM_001031835, intron 15 of 31)	intron (NM_001031835, intron 15 of 31)	151269	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
173609	chr4	10954651	10955100	+	0	NA	Intergenic	Intergenic	-270107	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
136469	chr2	177195251	177195430	+	0	NA	Intergenic	Intergenic	17071	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
88203	chr16	81798271	81799250	+	0	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	19469	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
129874	chr2	73087471	73087630	+	0	NA	intron (NM_001371272, intron 3 of 5)	intron (NM_001371272, intron 3 of 5)	-15838	NM_001371740	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
59214	chr13	23373951	23374350	+	0	NA	intron (NM_014363, intron 3 of 9)	intron (NM_014363, intron 3 of 9)	1358	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
227662	chr9	92975571	92975730	+	0	NA	intron (NM_001369951, intron 2 of 17)	intron (NM_001369951, intron 2 of 17)	1181	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
72341	chr15	31325151	31327400	+	0	NA	promoter-TSS (NM_015995)	promoter-TSS (NM_015995)	-560	NM_001302461	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
207783	chr7	50213401	50214200	+	0	NA	Intergenic	Intergenic	-90264	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
210763	chr7	100688551	100688850	+	0	NA	non-coding (NR_164719, exon 3 of 27)	non-coding (NR_164719, exon 3 of 27)	5550	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
194914	chr6	34790571	34790800	+	0	NA	Intergenic	AluJb|SINE|Alu	-1398	NM_017754	54887		NM_017754	ENSG00000065060	BLTP3A	C6orf107|ICBP90|SHIP164B|UHRF1BP1|dJ349A12.1	bridge-like lipid transfer protein family member 3A	protein-coding
173959	chr4	25926571	25926730	+	0	NA	intron (NM_001145432, intron 1 of 2)	intron (NM_001145432, intron 1 of 2)	12458	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
78589	chr15	93044101	93044300	+	0	NA	3' UTR (NM_001166289, exon 4 of 4)	3' UTR (NM_001166289, exon 4 of 4)	28956	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
38816	chr11	47293871	47294630	+	0	NA	intron (NM_001376661, intron 20 of 30)	AluSp|SINE|Alu	-22140	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
198054	chr6	90202071	90202800	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	94408	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
84833	chr16	31111821	31112430	+	0	NA	exon (NM_005881, exon 12 of 12)	exon (NM_005881, exon 12 of 12)	3739	NM_001122957	10295		NM_005881	ENSG00000103507	BCKDK	BCKDKD|BDK	branched chain keto acid dehydrogenase kinase	protein-coding
50041	chr12	44000371	44000630	+	0	NA	intron (NM_001286212, intron 3 of 6)	intron (NM_001286212, intron 3 of 6)	164419	NM_032256	84216		NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
54778	chr12	94174551	94175280	+	0	NA	intron (NM_005761, intron 2 of 30)	intron (NM_005761, intron 2 of 30)	26338	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
186384	chr5	135031001	135031700	+	0	NA	exon (NM_002653, exon 2 of 3)	exon (NM_002653, exon 2 of 3)	-1924	NR_161235	100996485		NR_161235	ENSG00000224186	PITX1-AS1	C5orf66	PITX1 antisense RNA 1	ncRNA
197128	chr6	57395571	57395730	+	0	NA	intron (NM_000947, intron 7 of 13)	L1PB1|LINE|L1	5518	NR_036097	100422884		NR_036097	ENSG00000212017	MIR548U	-	microRNA 548u	ncRNA
56343	chr12	112980751	112981480	+	0	NA	intron (NM_016817, intron 1 of 10)	L1MA4|LINE|L1	2596	NM_002535	4939		NM_002535	ENSG00000111335	OAS2	-	2'-5'-oligoadenylate synthetase 2	protein-coding
212833	chr7	130491751	130492380	+	0	NA	promoter-TSS (NR_004382)	promoter-TSS (NR_004382)	7	NM_001253900	4232		NM_002402	ENSG00000106484	MEST	PEG1	mesoderm specific transcript	protein-coding
220855	chr8	103353751	103354450	+	0	NA	Intergenic	Intergenic	-17438	NM_138455	115908		NM_138455	ENSG00000164932	CTHRC1	-	collagen triple helix repeat containing 1	protein-coding
137714	chr2	197521551	197522300	+	0	NA	intron (NM_001204094, intron 1 of 7)	MER11C|LTR|ERVK	5627	NM_001204094	25843		NM_015387	ENSG00000115540	MOB4	2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3	MOB family member 4, phocein	protein-coding
150409	chr21	42381471	42381630	+	0	NA	TTS (NM_032405)	TTS (NM_032405)	7599	NM_032404	64699		NM_024022	ENSG00000160183	TMPRSS3	DFNB10|DFNB8|ECHOS1|TADG12	transmembrane serine protease 3	protein-coding
210664	chr7	100493371	100494500	+	0	NA	3' UTR (NM_173564, exon 7 of 7)	3' UTR (NM_173564, exon 7 of 7)	10008	NM_173564	222950		NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
143145	chr20	23937301	23937830	+	0	NA	Intergenic	Intergenic	49310	NM_178312	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
145806	chr20	45424321	45424580	+	0	NA	intron (NR_047691, intron 10 of 11)	intron (NR_047691, intron 10 of 11)	-1060	NR_106870	102465487		NR_106870	ENSG00000273555	MIR6812	hsa-mir-6812	microRNA 6812	ncRNA
228150	chr9	96910321	96910630	+	0	NA	TTS (NR_028350)	TTS (NR_028350)	1400	NR_028350	441454		NR_028350		PTMAP11	-	prothymosin alpha pseudogene 11	pseudo
207684	chr7	45157101	45158080	+	0	NA	promoter-TSS (NM_005856)	promoter-TSS (NM_005856)	-201	NM_005856	10268		NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
1298	chr1	2342401	2342600	+	0	NA	intron (NM_024848, intron 10 of 13)	intron (NM_024848, intron 10 of 13)	10161	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
124178	chr19	56140321	56142250	+	0	NA	promoter-TSS (NM_001253792)	promoter-TSS (NM_001253792)	-2	NM_018337	55311		NM_018337	ENSG00000167685	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
176892	chr4	102789651	102789750	+	0	NA	intron (NR_125932, intron 4 of 4)	L1MB5|LINE|L1	12663	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
128656	chr2	61445351	61445650	+	0	NA	intron (NM_014709, intron 1 of 79)	AluY|SINE|Alu	25587	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
60622	chr13	42277701	42278080	+	0	NA	intron (NM_016248, intron 1 of 12)	L2c|LINE|L2	5738	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
151197	chr21	45104371	45105050	+	0	NA	intron (NM_001346688, intron 1 of 11)	intron (NM_001346688, intron 1 of 11)	29659	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
111117	chr19	3219971	3220330	+	0	NA	Intergenic	AluJo|SINE|Alu	-4511	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
189369	chr5	172640921	172641730	+	0	NA	promoter-TSS (NM_001308177)	promoter-TSS (NM_001308177)	62	NM_001142651	54492		NM_001142651	ENSG00000214357	NEURL1B	NEURL3|RNF67B|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
146061	chr20	47483251	47483550	+	0	NA	Intergenic	L2a|LINE|L2	-18487	NM_181659	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
209413	chr7	76349151	76349450	+	0	NA	intron (NM_012479, intron 1 of 1)	AluY|SINE|Alu	9691	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
130000	chr2	74104871	74105100	+	0	NA	3' UTR (NM_001287491, exon 12 of 12)	3' UTR (NM_001287491, exon 12 of 12)	42927	NM_001035505	388962		NM_212552	ENSG00000163170	BOLA3	MMDS2	bolA family member 3	protein-coding
220961	chr8	109652451	109652750	+	0	NA	intron (NM_001099744, intron 1 of 7)	intron (NM_001099744, intron 1 of 7)	-3697	NM_001099748	55638		NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding
156060	chr22	39989901	39990100	+	0	NA	Intergenic	Intergenic	-4954	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
97091	chr17	42419821	42420280	+	0	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	3206	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
137613	chr2	197301751	197302250	+	0	NA	intron (NR_046837, intron 1 of 5)	L2a|LINE|L2	519	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
51976	chr12	53949701	53950280	+	0	NA	Intergenic	CpG	-4913	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
128906	chr2	64207101	64207800	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-1965	NR_033837	150992		NR_033837	ENSG00000230923	LINC00309	NCRNA00309	long intergenic non-protein coding RNA 309	ncRNA
54941	chr12	96226721	96226980	+	0	NA	intron (NM_005230, intron 2 of 4)	GA-rich|Low_complexity|Low_complexity	-28648	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
186230	chr5	134397151	134397880	+	0	NA	Intergenic	Intergenic	14366	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
41707	chr11	66647351	66647450	+	0	NA	TTS (NM_001198845)	TTS (NM_001198845)	8697	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
205394	chr7	16223851	16224280	+	0	NA	intron (NR_160656, intron 6 of 7)	intron (NR_160656, intron 6 of 7)	13579	NR_038947	100506025		NR_038946	ENSG00000229688	CRPPA-AS1	ISPD-AS1	CRPPA antisense RNA 1	ncRNA
19911	chr1	184160371	184160750	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	108830	NR_125335	116461		NM_052965	ENSG00000198860	TSEN15	C1orf19|PCH2F|sen15	tRNA splicing endonuclease subunit 15	protein-coding
139484	chr2	224489121	224489380	+	0	NA	intron (NM_003590, intron 13 of 15)	L1P3|LINE|L1	80705	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
118187	chr19	35116171	35116530	+	0	NA	5' UTR (NM_021910, exon 2 of 9)	5' UTR (NM_021910, exon 2 of 9)	522	NM_001136009	5349		NM_005971	ENSG00000089356	FXYD3	MAT8|PLML	FXYD domain containing ion transport regulator 3	protein-coding
76204	chr15	73696171	73696330	+	0	NA	intron (NM_001329628, intron 1 of 7)	intron (NM_001329628, intron 1 of 7)	11480	NM_001329628	80381		NM_025240	ENSG00000103855	CD276	4Ig-B7-H3|B7-H3|B7H3|B7RP-2	CD276 molecule	protein-coding
159233	chr3	12912521	12912780	+	0	NA	intron (NM_014869, intron 9 of 13)	AluYb8|SINE|Alu	-27439	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
174251	chr4	37994501	37994700	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	34202	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
189063	chr5	170264401	170264600	+	0	NA	intron (NM_005565, intron 10 of 20)	intron (NM_005565, intron 10 of 20)	31494	NM_001305393	133874		NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
61125	chr13	48526151	48526850	+	0	NA	intron (NM_001268, intron 1 of 14)	AluJo|SINE|Alu	6580	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
8828	chr1	42963421	42963850	+	0	NA	intron (NR_033967, intron 1 of 3)	intron (NR_033967, intron 1 of 3)	4586	NR_033967	440584		NR_033967	ENSG00000227533	SLC2A1-DT	SLC2A1-AS1	SLC2A1 divergent transcript	ncRNA
158923	chr3	10021271	10021630	+	0	NA	intron (NR_002786, intron 2 of 2)	intron (NR_002786, intron 2 of 2)	4686	NR_002786	152302		NR_002786	ENSG00000186162	CIDECP1	CICE|CIDECP	CIDEC pseudogene 1	pseudo
168350	chr3	141884301	141884900	+	0	NA	intron (NM_001679, intron 1 of 6)	MLT2A1|LTR|ERVL	7957	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
173731	chr4	15991971	15992130	+	0	NA	intron (NM_001371408, intron 16 of 24)	L1MB5|LINE|L1	-28875	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
47963	chr12	6870951	6871050	+	0	NA	TTS (NM_001319670)	TTS (NM_001319670)	2303	NM_001146316	84727		NM_032641	ENSG00000111671	SPSB2	GRCC9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding
230311	chr9	127960201	127960650	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	-9711	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
59722	chr13	29808301	29808500	+	0	NA	intron (NM_007106, intron 1 of 4)	intron (NM_007106, intron 1 of 4)	42217	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
44338	chr11	102416851	102417450	+	0	NA	intron (NM_052932, intron 2 of 4)	L1PA15|LINE|L1	35615	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
216976	chr8	23066951	23067050	+	0	NA	intron (NM_147187, intron 1 of 9)	AluSq2|SINE|Alu	-1229	NR_038873	286059		NR_038873	ENSG00000246130	TNFRSF10B-AS1	DR5-AS	TNFRSF10B antisense RNA 1	pseudo
104811	chr17	81803371	81804530	+	0	NA	promoter-TSS (NM_000160)	promoter-TSS (NM_000160)	-200	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
43074	chr11	74701351	74701650	+	0	NA	intron (NM_001278473, intron 9 of 10)	Plat_L3|LINE|CR1	9867	NM_001304417	25884		NM_015424	ENSG00000054938	CHRDL2	BNF1|CHL2	chordin like 2	protein-coding
185352	chr5	127029371	127029980	+	0	NA	intron (NM_178450, intron 1 of 4)	intron (NM_178450, intron 1 of 4)	883	NM_178450	115123		NM_178450	ENSG00000173926	MARCHF3	MARCH-III|MARCH3|RNF173	membrane associated ring-CH-type finger 3	protein-coding
11457	chr1	89872451	89872750	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	50661	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
151222	chr21	45253201	45253400	+	0	NA	intron (NR_135279, intron 2 of 2)	intron (NR_135279, intron 2 of 2)	18960	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
145587	chr20	44521551	44523050	+	0	NA	promoter-TSS (NM_198941)	promoter-TSS (NM_198941)	-184	NM_198941	10955		NM_006811	ENSG00000132824	SERINC3	AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1	serine incorporator 3	protein-coding
104536	chr17	81255201	81255600	+	0	NA	intron (NM_001037984, intron 11 of 15)	intron (NM_001037984, intron 11 of 15)	15486	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
87824	chr16	75622381	75624250	+	0	NA	promoter-TSS (NM_001324448)	promoter-TSS (NM_001324448)	-34	NM_001324448	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
99945	chr17	57288871	57289030	+	0	NA	intron (NM_170721, intron 4 of 9)	MER20|DNA|hAT-Charlie	31931	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
20693	chr1	200561851	200561950	+	0	NA	intron (NM_001305792, intron 23 of 27)	intron (NM_001305792, intron 23 of 27)	56938	NM_001305792	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
15310	chr1	149857721	149858300	+	0	NA	intron (NR_168447, intron 1 of 1).2	intron (NR_168447, intron 1 of 1).2	3149	NM_001034077	554313		NM_001034077	ENSG00000270276	H4C15	H4-16|H4/o|H4C1|H4C11|H4C12|H4C13|H4C14|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST2H4B	H4 clustered histone 15	protein-coding
206838	chr7	37342451	37343550	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	10668	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
17879	chr1	160068051	160068780	+	0	NA	intron (NM_002241, intron 1 of 1)	intron (NM_002241, intron 1 of 1)	1745	NM_002241	3766		NM_002241	ENSG00000177807	KCNJ10	BIRK-10|KCNJ13-PEN|KIR1.2|KIR4.1|SESAME	potassium inwardly rectifying channel subfamily J member 10	protein-coding
192248	chr6	20206601	20207230	+	0	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	5554	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
12903	chr1	110412451	110412900	+	0	NA	intron (NR_102697, intron 2 of 2)	intron (NR_102697, intron 2 of 2)	-4751	NM_006402	10542		NM_006402	ENSG00000134248	LAMTOR5	HBXIP|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding
77635	chr15	85473571	85473930	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	93147	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
235293	chrX	42207671	42207830	+	0	NA	Intergenic	L1PA3|LINE|L1	-284196	NM_001367721	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
93101	chr17	17668921	17669230	+	0	NA	Intergenic	Intergenic	8613	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
60275	chr13	40616471	40617250	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	49781	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
225457	chr9	35162641	35162830	+	0	NA	intron (NM_001371186, intron 1 of 38)	intron (NM_001371186, intron 1 of 38)	726	NM_006377	10497		NM_006377	ENSG00000198722	UNC13B	MUNC13|UNC13|Unc13h2|munc13-2	unc-13 homolog B	protein-coding
186017	chr5	133979621	133980280	+	0	NA	intron (NM_003374, intron 6 of 8)	intron (NM_003374, intron 6 of 8)	11261	NR_134247	105379183		NR_134247		LOC105379183	-	uncharacterized LOC105379183	ncRNA
171650	chr3	197653071	197653430	+	0	NA	Intergenic	Intergenic	21326	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
183079	chr5	73693421	73694730	+	0	NA	intron (NM_001177693, intron 2 of 35)	intron (NM_001177693, intron 2 of 35)	67917	NM_001177693	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
144622	chr20	35880801	35881250	+	0	NA	intron (NM_016436, intron 9 of 17)	L1MC4|LINE|L1	73477	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
11935	chr1	93750821	93751350	+	0	NA	intron (NM_001261408, intron 2 of 13)	MIRb|SINE|MIR	24298	NR_148965	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
82067	chr16	13935421	13935680	+	0	NA	exon (NM_005236, exon 8 of 11)	exon (NM_005236, exon 8 of 11)	15396	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
93808	chr17	20555251	20555550	+	0	NA	Intergenic	Intergenic	-24324	NM_001190790	256223		NM_001190790	ENSG00000214819	CDRT15L2	-	CMT1A duplicated region transcript 15 like 2	protein-coding
52427	chr12	55822201	55822600	+	0	NA	TTS (NM_014182)	TTS (NM_014182)	4359	NM_014182	29095		NM_014182	ENSG00000123353	ORMDL2	HSPC160|MST095|MSTP095|adoplin-2	ORMDL sphingolipid biosynthesis regulator 2	protein-coding
237730	chrX	126472251	126472750	+	0	NA	Intergenic	Intergenic	80314	NM_178470	139170		NM_178470	ENSG00000198889	DCAF12L1	KIAA1892L|WDR40B	DDB1 and CUL4 associated factor 12 like 1	protein-coding
115480	chr19	15367271	15367830	+	0	NA	intron (NM_005858, intron 9 of 13)	AluSg|SINE|Alu	12237	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
222859	chr8	142680601	142681200	+	0	NA	intron (NM_005672, intron 1 of 2)	intron (NM_005672, intron 1 of 2)	405	NM_005672	8000		NM_005672	ENSG00000167653	PSCA	PRO232|lncPSCA	prostate stem cell antigen	protein-coding
123635	chr19	54628551	54628850	+	0	NA	intron (NM_006669, intron 1 of 15).2	MER21A|LTR|ERVL	-1711	NM_001081639	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
171900	chr4	821571	821930	+	0	NA	intron (NM_006651, intron 2 of 3)	intron (NM_006651, intron 2 of 3)	4379	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
191357	chr6	7156221	7156480	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	48389	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
108065	chr18	59885601	59886280	+	0	NA	Intergenic	Intergenic	-14056	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
152405	chr22	20557151	20559050	+	0	NA	intron (NM_001003891, intron 5 of 17)	AluY|SINE|Alu	50053	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
26570	chr10	21740821	21741280	+	0	NA	intron (NR_136736, intron 25 of 25)	intron (NR_136736, intron 25 of 25)	206818	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
149819	chr21	35011551	35011880	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	27711	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
68084	chr14	75278001	75280400	+	0	NA	intron (NM_005252, intron 1 of 3)	CpG-7466	372	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
75969	chr15	70492151	70494200	+	0	NA	Intergenic	Intergenic	12753	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
71961	chr15	24766601	24766800	+	0	NA	Intergenic	L1MB2|LINE|L1	-56908	NR_146177	104472715		NR_146177		SNHG14	115HG|IC-SNURF-SNRPN|LNCAT|NCRNA00214|U-UBE3A-ATS|UBE3A-AS|UBE3A-AS1|UBE3A-ATS|UBE3AATS	small nucleolar RNA host gene 14	ncRNA
181142	chr5	38382801	38383050	+	0	NA	intron (NM_001205301, intron 6 of 22)	intron (NM_001205301, intron 6 of 22)	20546	NR_102749	100506475		NR_102749	ENSG00000248572	EGFLAM-AS2	-	EGFLAM antisense RNA 2	ncRNA
90385	chr17	1271971	1272130	+	0	NA	TTS (NM_001164405)	TTS (NM_001164405)	1606	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
94651	chr17	30170671	30170830	+	0	NA	intron (NM_032141, intron 2 of 6)	L1MA8|LINE|L1	-53590	NR_036149	100423003		NR_036149	ENSG00000284399	MIR3184	-	microRNA 3184	ncRNA
106208	chr18	11733001	11733300	+	0	NA	intron (NM_182978, intron 1 of 11)	intron (NM_182978, intron 1 of 11)	-18322	NM_001261443	2774		NM_002071	ENSG00000141404	GNAL	DYT25|HG1O	G protein subunit alpha L	protein-coding
17661	chr1	157586071	157586230	+	0	NA	intron (NM_031282, intron 6 of 11)	intron (NM_031282, intron 6 of 11)	11935	NM_031282	83417		NM_031282	ENSG00000163518	FCRL4	CD307d|FCRH4|IGFP2|IRTA1	Fc receptor like 4	protein-coding
60755	chr13	44913951	44914250	+	0	NA	Intergenic	AluJb|SINE|Alu	75371	NM_012345	26747		NM_012345	ENSG00000083635	NUFIP1	NUFIP|Rsa1|bA540M5.1	nuclear FMR1 interacting protein 1	protein-coding
138352	chr2	203932521	203932980	+	0	NA	Intergenic	MER50B|LTR|ERV1	-4013	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
37222	chr11	14439021	14439350	+	0	NA	Intergenic	Intergenic	60626	NM_001144061	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
123552	chr19	54388001	54389730	+	0	NA	Intergenic	Intergenic	-18309	NM_001289026	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
191851	chr6	15252351	15252850	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	3745	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
80332	chr16	2461121	2461650	+	0	NA	intron (NM_025108, intron 4 of 9)	intron (NM_025108, intron 4 of 9)	1276	NM_025108	80178		NM_025108	ENSG00000162062	TEDC2	C16orf59	tubulin epsilon and delta complex 2	protein-coding
97321	chr17	43252101	43252430	+	0	NA	promoter-TSS (NR_002716).5	promoter-TSS (NR_002716).5	-246	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
181099	chr5	36928251	36928350	+	0	NA	intron (NM_133433, intron 1 of 46)	intron (NM_133433, intron 1 of 46)	51531	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
223261	chr8	143711521	143711830	+	0	NA	intron (NR_134306, intron 3 of 5)	intron (NR_134306, intron 3 of 5)	-3566	NM_001162914	100130274		NM_001162914	ENSG00000255181	CCDC166	-	coiled-coil domain containing 166	protein-coding
88726	chr16	86013701	86014130	+	0	NA	Intergenic	(CATCAT)n|Simple_repeat|Simple_repeat	95568	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
176725	chr4	101327051	101327350	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	3214	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
84180	chr16	29821011	29822750	+	0	NA	3' UTR (NM_024516, exon 3 of 3)	3' UTR (NM_024516, exon 3 of 3)	1418	NM_005115	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
77412	chr15	83283301	83283700	+	0	NA	promoter-TSS (NM_001301206)	promoter-TSS (NM_001301206)	-43	NM_001301206	646		NM_001717	ENSG00000169594	BNC1	BNC|BSN1|HsT19447|POF16|bn1	basonuclin zinc finger protein 1	protein-coding
209295	chr7	75990651	75990750	+	0	NA	intron (NR_156695, intron 3 of 10)	AluSx1|SINE|Alu	3895	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
85703	chr16	56600471	56601150	+	0	NA	Intergenic	L2c|LINE|L2	-7774	NM_005953	4502		NM_005953	ENSG00000125148	MT2A	MT-2|MT-II|MT2	metallothionein 2A	protein-coding
232530	chr9	136333971	136334130	+	0	NA	intron (NM_015597, intron 1 of 8)	intron (NM_015597, intron 1 of 8)	6511	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
147929	chr20	62920171	62920550	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	6145	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
114886	chr19	13888851	13888950	+	0	NA	intron (NM_001345848, intron 5 of 7)	intron (NM_001345848, intron 5 of 7)	11651	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
92999	chr17	17180211	17180730	+	0	NA	intron (NM_015134, intron 22 of 22)	intron (NM_015134, intron 22 of 22)	25863	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
216588	chr8	22036521	22037580	+	0	NA	TTS (NM_001286681)	TTS (NM_001286681)	-5703	NM_001304478	8822		NM_003867	ENSG00000158815	FGF17	FGF-13|FGF-17|HH20	fibroblast growth factor 17	protein-coding
100819	chr17	64084721	64085230	+	0	NA	intron (NM_001433, intron 2 of 21)	L2a|LINE|L2	45169	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
133981	chr2	130797301	130799750	+	0	NA	Intergenic	Intergenic	-38389	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
42601	chr11	72085871	72086030	+	0	NA	intron (NM_001145308, intron 1 of 6)	MLT1H|LTR|ERVL-MaLR	5100	NM_001318803	120356739		NM_145309	ENSG00000184154	LRRC51	-	leucine rich repeat containing 51	protein-coding
230817	chr9	129034871	129035030	+	0	NA	Intergenic	AluSc|SINE|Alu	-1676	NR_138422	84895		NM_032809	ENSG00000148343	MIGA2	C9orf54|FAM73B	mitoguardin 2	protein-coding
125240	chr2	10396951	10397050	+	0	NA	intron (NM_001258358, intron 2 of 4)	intron (NM_001258358, intron 2 of 4)	28236	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
195147	chr6	35716521	35717180	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	11733	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
163839	chr3	52471301	52471530	+	0	NA	intron (NM_001276294, intron 4 of 13)	MIRb|SINE|MIR	15811	NM_001276294	11188		NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
126621	chr2	28801121	28801380	+	0	NA	3' UTR (NM_002709, exon 8 of 8)	3' UTR (NM_002709, exon 8 of 8)	-9584	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
55080	chr12	96901871	96902330	+	0	NA	Intergenic	Intergenic	-5157	NM_152905	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
53686	chr12	68459921	68460380	+	0	NA	Intergenic	Intergenic	-8666	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
170259	chr3	184257301	184257500	+	0	NA	intron (NM_014693, intron 1 of 18)	intron (NM_014693, intron 1 of 18)	4153	NM_033259	94032		NM_033259	ENSG00000163888	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin dependent protein kinase II inhibitor 2	protein-coding
98508	chr17	47492101	47493750	+	0	NA	promoter-TSS (NR_033934)	promoter-TSS (NR_033934)	-305	NR_033934	653479		NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
30580	chr10	80104351	80104950	+	0	NA	Intergenic	Intergenic	25405	NR_072984	80195		NM_025125	ENSG00000133678	TMEM254	C10orf57|bA369J21.6	transmembrane protein 254	protein-coding
104317	chr17	80935321	80935980	+	0	NA	intron (NM_020761, intron 24 of 33)	L1ME1|LINE|L1	35563	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
234319	chrX	13747801	13748200	+	0	NA	intron (NM_001330210, intron 9 of 23)	intron (NM_001330210, intron 9 of 23)	13252	NM_003611	8481		NM_003611	ENSG00000046651	OFD1	71-7A|CXorf5|JBTS10|RP23|SGBS2	OFD1 centriole and centriolar satellite protein	protein-coding
16638	chr1	155127521	155128350	+	0	NA	promoter-TSS (NM_004428)	promoter-TSS (NM_004428)	59	NM_004428	1942		NM_004428	ENSG00000169242	EFNA1	B61|ECKLG|EFL1|EPLG1|GMAN|LERK-1|LERK1|TNFAIP4	ephrin A1	protein-coding
191965	chr6	16144951	16145650	+	0	NA	exon (NM_013262, exon 6 of 7)	exon (NM_013262, exon 6 of 7)	3744	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
69710	chr14	98195501	98196500	+	0	NA	Intergenic	Intergenic	-217876	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
217131	chr8	25336271	25336430	+	0	NA	exon (NM_024940, exon 22 of 52)	exon (NM_024940, exon 22 of 52)	-9052	NR_106936	102465527		NR_106936	ENSG00000274988	MIR6876	hsa-mir-6876	microRNA 6876	ncRNA
67853	chr14	74089301	74089930	+	0	NA	intron (NM_001372006, intron 1 of 5)	AluJo|SINE|Alu	4659	NM_001372005	91750		NM_001024674	ENSG00000205659	LIN52	C14orf46|c14_5549	lin-52 DREAM MuvB core complex component	protein-coding
116924	chr19	18830151	18830750	+	0	NA	Intergenic	Intergenic	-1509	NM_001297549	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
237366	chrX	118975001	118975750	+	0	NA	promoter-TSS (NM_001289109)	promoter-TSS (NM_001289109)	757	NM_001031855	79836		NM_024778	ENSG00000175556	LONRF3	RNF127	LON peptidase N-terminal domain and ring finger 3	protein-coding
227916	chr9	94178271	94179230	+	0	NA	promoter-TSS (NR_029481)	promoter-TSS (NR_029481)	-84	NR_029481	406886		NR_029481	ENSG00000199133	MIRLET7D	LET7D|MIRNLET7D|hsa-let-7d|let-7d	microRNA let-7d	ncRNA
101604	chr17	68172201	68173130	+	0	NA	Intergenic	Intergenic	-25995	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
235688	chrX	48712351	48714170	+	0	NA	Intergenic	Intergenic	16526	NM_003173	6839		NM_003173	ENSG00000101945	SUV39H1	H3-K9-HMTase 1|KMT1A|MG44|SUV39H	SUV39H1 histone lysine methyltransferase	protein-coding
34453	chr10	132434301	132434880	+	0	NA	Intergenic	MLT2D|LTR|ERVL	-10599	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
86287	chr16	58610821	58611080	+	0	NA	intron (NM_206999, intron 1 of 30)	AluSc8|SINE|Alu	18876	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
116042	chr19	17205001	17206230	+	0	NA	intron (NM_004145, intron 31 of 39)	intron (NM_004145, intron 31 of 39)	-9742	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
102815	chr17	76451001	76451200	+	0	NA	intron (NM_022066, intron 1 of 17)	intron (NM_022066, intron 1 of 17)	2052	NM_022066	63893		NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin conjugating enzyme E2 O	protein-coding
224969	chr9	33074071	33074530	+	0	NA	intron (NM_018225, intron 1 of 11)	AluJr|SINE|Alu	2374	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
125573	chr2	16546351	16546450	+	0	NA	Intergenic	Intergenic	119434	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
104084	chr17	80254301	80255530	+	0	NA	Intergenic	L1ME3G|LINE|L1	-5937	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
238603	chrX	153925321	153925690	+	0	NA	intron (NM_001164741, intron 1 of 22)	intron (NM_001164741, intron 1 of 22)	759	NM_001164741	393		NM_001666	ENSG00000089820	ARHGAP4	C1|RGC1|RhoGAP4|SrGAP4|p115	Rho GTPase activating protein 4	protein-coding
231252	chr9	129991551	129991650	+	0	NA	intron (NM_001363755, intron 2 of 15)	L2a|LINE|L2	51589	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
7091	chr1	32067551	32069400	+	0	NA	Intergenic	AluY|SINE|Alu	-3556	NM_001319677	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
27953	chr10	42091351	42091450	+	0	NA	Intergenic	Intergenic	276645	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
147194	chr20	57251051	57251350	+	0	NA	intron (NM_001719, intron 1 of 6)	MIR|SINE|MIR	15441	NM_001719	655		NM_001719	ENSG00000101144	BMP7	OP-1	bone morphogenetic protein 7	protein-coding
70497	chr14	102135251	102135750	+	0	NA	intron (NM_001017963, intron 1 of 11)	LTR12C|LTR|ERV1	-3923	NM_001353670	91833		NM_144574	ENSG00000140153	WDR20	Bun107|DMR	WD repeat domain 20	protein-coding
112203	chr19	5683401	5683930	+	0	NA	intron (NM_001267869, intron 1 of 5)	AluJo|SINE|Alu	2638	NM_198707	374875		NM_198533	ENSG00000167733	HSD11B1L	11-DH3|11-beta-HSD3|HSD1L|HSD3|SCDR10|SCDR10B|SDR26C2	hydroxysteroid 11-beta dehydrogenase 1 like	protein-coding
131561	chr2	96799251	96799550	+	0	NA	intron (NM_020184, intron 4 of 6)	intron (NM_020184, intron 4 of 6)	1122	NR_036074	100422928		NR_036074	ENSG00000264157	MIR3127	mir-3127	microRNA 3127	ncRNA
101954	chr17	74592151	74592450	+	0	NA	promoter-TSS (NM_001115152)	promoter-TSS (NM_001115152)	-17	NM_001115152	100131439		NM_001115152	ENSG00000204345	CD300LD	CD300D|CLM-4|CLM-5|CMRF35-A4|CMRF35A4	CD300 molecule like family member d	protein-coding
193585	chr6	30685501	30685700	+	0	NA	exon (NM_001134870, exon 2 of 4).6	exon (NM_001134870, exon 2 of 4).6	1045	NM_133471	170954		NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding
183046	chr5	73387451	73388700	+	0	NA	Intergenic	Intergenic	50169	NR_146627	105379033		NR_146627		LINC02230	-	long intergenic non-protein coding RNA 2230	ncRNA
153177	chr22	23834801	23835430	+	0	NA	3' UTR (NM_001317946, exon 9 of 9)	3' UTR (NM_001317946, exon 9 of 9)	3891	NM_001135751	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
161447	chr3	42091371	42091830	+	0	NA	intron (NM_001042646, intron 1 of 15)	intron (NM_001042646, intron 1 of 15)	243	NM_001349246	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
22618	chr1	223486421	223486680	+	0	NA	Intergenic	Intergenic	93135	NM_152610	164127		NM_152610	ENSG00000178395	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
235415	chrX	45759011	45759680	+	0	NA	Intergenic	Intergenic	-12221	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
73889	chr15	50430921	50431180	+	0	NA	intron (NM_001128610, intron 1 of 19)	MER20|DNA|hAT-Charlie	6645	NM_005154	9101		NM_005154	ENSG00000138592	USP8	HumORF8|PITA4|SPG59|UBPY	ubiquitin specific peptidase 8	protein-coding
238953	chrX	155049071	155049450	+	0	NA	intron (NM_023934, intron 3 of 4)	intron (NM_023934, intron 3 of 4)	21876	NM_001018025	4515		NM_014221	ENSG00000214827	MTCP1	P13MTCP1|TCL1C|p8MTCP1	mature T cell proliferation 1	protein-coding
172255	chr4	1381271	1381430	+	0	NA	intron (NM_001317935, intron 12 of 13)	intron (NM_001317935, intron 12 of 13)	25092	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
116199	chr19	17477021	17477280	+	0	NA	intron (NM_198580, intron 1 of 11)	AluSz6|SINE|Alu	6626	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
234013	chrX	3701801	3702080	+	0	NA	intron (NM_005044, intron 1 of 8)	MER41A|LTR|ERV1	11709	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
37714	chr11	30584421	30584680	+	0	NA	promoter-TSS (NM_001377954)	promoter-TSS (NM_001377954)	172	NR_165345	744		NM_001584	ENSG00000066382	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
156119	chr22	40099171	40099330	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSg4|SINE|Alu	54433	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
33516	chr10	119198071	119198830	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9121	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
114507	chr19	12787371	12787630	+	0	NA	TTS (NR_049864)	TTS (NR_049864)	372	NR_049864	100847071		NR_049864	ENSG00000263800	MIR5684	-	microRNA 5684	ncRNA
167051	chr3	126862121	126862580	+	0	NA	intron (NM_032343, intron 5 of 7)	intron (NM_032343, intron 5 of 7)	-126244	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
237398	chrX	119576621	119577130	+	0	NA	intron (NM_181762, intron 3 of 4)	intron (NM_181762, intron 3 of 4)	2312	NM_001282161	7319		NM_003336	ENSG00000077721	UBE2A	HHR6A|MRXS30|MRXSN|RAD6A|UBC2	ubiquitin conjugating enzyme E2 A	protein-coding
8578	chr1	41377271	41377630	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	-1781	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
163765	chr3	52375271	52375430	+	0	NA	exon (NM_015512, exon 45 of 78)	exon (NM_015512, exon 45 of 78)	34658	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
50610	chr12	48678651	48679350	+	0	NA	intron (NM_017822, intron 4 of 9)	intron (NM_017822, intron 4 of 9)	3238	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
37675	chr11	27471451	27472400	+	0	NA	intron (NR_131169, intron 1 of 4)	CpG	194	NR_131170	105376671		NR_131169	ENSG00000254862	LGR4-AS1	lnc-BBOX1-1	LGR4 antisense RNA 1	ncRNA
202583	chr6	158693671	158693900	+	0	NA	intron (NM_001318745, intron 3 of 14)	AluJb|SINE|Alu	30382	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
198440	chr6	106106371	106106900	+	0	NA	intron (NM_182907, intron 4 of 4)	intron (NM_182907, intron 4 of 4)	7694	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
65598	chr14	52172001	52172200	+	0	NA	Intergenic	HERVK9-int|LTR|ERVK	-95598	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
187405	chr5	141938501	141938700	+	0	NA	exon (NM_001142603, exon 12 of 13)	exon (NM_001142603, exon 12 of 13)	14729	NM_014773	9812		NM_014773	ENSG00000081791	DELE1	DELE|DELE1(L)|KIAA0141	DAP3 binding cell death enhancer 1	protein-coding
229826	chr9	125744951	125745300	+	0	NA	intron (NR_122032, intron 1 of 1)	intron (NR_122032, intron 1 of 1)	804	NR_122032	51145		NM_016158		PBX3-DT	-	PBX3 divergent transcript	ncRNA
46980	chr12	13751	14180	+	0	NA	TTS (NR_130745)	TTS (NR_130745)	18050	NR_130745	100288778		NR_130745	ENSG00000226210	WASH8P	-	WAS protein family homolog 8, pseudogene	pseudo
238704	chrX	154089901	154090300	+	0	NA	intron (NM_001316337, intron 2 of 4)	L1ME4a|LINE|L1	6869	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
154401	chr22	35314371	35314930	+	0	NA	intron (NR_156428, intron 1 of 13)	intron (NR_156428, intron 1 of 13)	14756	NR_156428	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
7401	chr1	32935671	32935980	+	0	NA	TTS (NM_153341)	TTS (NM_153341)	28984	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
216949	chr8	22982971	22983130	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-4201	NM_001160036	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
59655	chr13	28493651	28494380	+	0	NA	intron (NM_002019, intron 1 of 29)	CpG	1113	NM_002019	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
101703	chr17	68494851	68495350	+	0	NA	intron (NM_001278433, intron 1 of 10)	AluJr|SINE|Alu	-16680	NM_212471	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
124062	chr19	55597321	55598130	+	0	NA	exon (NM_032836, exon 2 of 3)	exon (NM_032836, exon 2 of 3)	1792	NM_032836	84922		NM_032836	ENSG00000179943	FIZ1	ZNF798	FLT3 interacting zinc finger 1	protein-coding
132514	chr2	106096701	106098430	+	0	NA	intron (NR_165308, intron 13 of 14)	intron (NR_165308, intron 13 of 14)	31877	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
119435	chr19	40376901	40377300	+	0	NA	intron (NM_001031696, intron 11 of 12)	intron (NM_001031696, intron 11 of 12)	7254	NR_106854	102465477		NR_106854	ENSG00000275652	MIR6796	hsa-mir-6796	microRNA 6796	ncRNA
45842	chr11	119379651	119380100	+	0	NA	intron (NM_004205, intron 1 of 12)	intron (NM_004205, intron 1 of 12)	1815	NM_004205	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
96934	chr17	42164921	42165580	+	0	NA	intron (NM_012285, intron 11 of 16)	intron (NM_012285, intron 11 of 16)	-10261	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
160002	chr3	18372921	18373600	+	0	NA	intron (NM_001322873, intron 9 of 10)	intron (NM_001322873, intron 9 of 10)	52079	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
144400	chr20	35272571	35272730	+	0	NA	intron (NM_001355008, intron 1 of 14)	intron (NM_001355008, intron 1 of 14)	5472	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
204287	chr7	2661251	2661630	+	0	NA	intron (NM_025250, intron 13 of 13)	intron (NM_025250, intron 13 of 13)	-18082	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
26621	chr10	22345151	22346130	+	0	NA	5' UTR (NM_001253855, exon 1 of 11)	5' UTR (NM_001253855, exon 1 of 11)	144	NM_012443	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
134289	chr2	135875371	135875900	+	0	NA	intron (NM_005915, intron 1 of 16)	intron (NM_005915, intron 1 of 16)	808	NM_005915	4175		NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
181393	chr5	40681501	40682750	+	0	NA	intron (NM_000958, intron 2 of 2)	intron (NM_000958, intron 2 of 2)	2210	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
54258	chr12	85469501	85469700	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	189380	NM_006982	8092		NM_006982	ENSG00000180318	ALX1	CART1|FND3|HEL23	ALX homeobox 1	protein-coding
49613	chr12	27781601	27781800	+	0	NA	intron (NM_020782, intron 1 of 2)	intron (NM_020782, intron 1 of 2)	-1464	NM_001146221	100287284		NM_001146221	ENSG00000205693	MANSC4	-	MANSC domain containing 4	protein-coding
105718	chr18	2706621	2707250	+	0	NA	intron (NM_015295, intron 15 of 47)	THE1D|LTR|ERVL-MaLR	51209	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
149602	chr21	33330801	33331500	+	0	NA	intron (NM_001384503, intron 1 of 10)	L1M2a|LINE|L1	6180	NM_001384503	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
42309	chr11	68465051	68465580	+	0	NA	intron (NM_001352362, intron 2 of 24)	intron (NM_001352362, intron 2 of 24)	4563	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
99031	chr17	48867351	48867650	+	0	NA	Intergenic	AluSg4|SINE|Alu	-25287	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
107651	chr18	48980001	48980200	+	0	NA	Intergenic	Intergenic	-29389	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
211916	chr7	112448521	112448780	+	0	NA	intron (NM_001197080, intron 1 of 11)	intron (NM_001197080, intron 1 of 11)	-1778	NM_001550	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
89119	chr16	88500171	88500730	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	30603	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
128735	chr2	61885401	61885600	+	0	NA	intron (NM_006430, intron 1 of 13)	AluSc|SINE|Alu	-2891	NM_001371765	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
161004	chr3	37310801	37311000	+	0	NA	intron (NM_001172713, intron 11 of 22)	intron (NM_001172713, intron 11 of 22)	-66705	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
149952	chr21	36353221	36353530	+	0	NA	intron (NM_001320445, intron 8 of 15)	AluSc5|SINE|Alu	-32017	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
239451	chrY	56714321	56714700	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-239745	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
228107	chr9	96553851	96553950	+	0	NA	intron (NR_147239, intron 4 of 14)	AluSc8|SINE|Alu	12931	NM_001351569	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
10976	chr1	84302551	84303330	+	0	NA	intron (NM_001134664, intron 1 of 3)	intron (NM_001134664, intron 1 of 3)	289	NM_001134664	148418		NM_001010971	ENSG00000203943	SAMD13	DJL|HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding
164684	chr3	67600801	67601430	+	0	NA	intron (NM_001177599, intron 2 of 10)	intron (NM_001177599, intron 2 of 10)	53497	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
107901	chr18	57017151	57017480	+	0	NA	intron (NM_052834, intron 25 of 26)	intron (NM_052834, intron 25 of 26)	54804	NR_048536	100885779		NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR|lincRNA-ST8SIA3	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
33712	chr10	121734651	121734750	+	0	NA	Intergenic	Intergenic	-136242	NM_022970	2263		NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
200059	chr6	130020101	130020600	+	0	NA	intron (NM_001346550, intron 1 of 21)	CpG	706	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
130057	chr2	74456201	74456530	+	0	NA	intron (NR_037849, intron 4 of 7)	L2a|LINE|L2	1278	NM_031288	83444		NM_031288	ENSG00000115274	INO80B	HMGA1L4|HMGIYL4|IES2|PAP-1BP|PAPA-1|PAPA1|ZNHIT4|hIes2	INO80 complex subunit B	protein-coding
153924	chr22	30323951	30324750	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	2591	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
61236	chr13	49790271	49790630	+	0	NA	intron (NM_002267, intron 1 of 16)	AluJo|SINE|Alu	2232	NM_002267	3839		NM_002267	ENSG00000102753	KPNA3	IPOA4|SPG88|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
218986	chr8	61839971	61840330	+	0	NA	Intergenic	L1MCb|LINE|L1	-49689	NR_149085	111082988		NR_149085	ENSG00000254120	LINC02155	-	long intergenic non-protein coding RNA 2155	ncRNA
161331	chr3	39502851	39502950	+	0	NA	non-coding (NR_103505, exon 4 of 7)	non-coding (NR_103505, exon 4 of 7)	35220	NM_001278322	4336		NM_182935	ENSG00000168314	MOBP	-	myelin associated oligodendrocyte basic protein	protein-coding
195072	chr6	35524201	35524400	+	0	NA	Intergenic	AluY|SINE|Alu	-11404	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
14283	chr1	143763201	143763430	+	0	NA	Intergenic	Intergenic	18480	NR_160531	105369140		NR_160528		LOC105369140	-	NBPF member 6 pseudogene	pseudo
7624	chr1	35555251	35555550	+	0	NA	intron (NM_024874, intron 1 of 20)	intron (NM_024874, intron 1 of 20)	2003	NM_024874	79932		NM_024874	ENSG00000142687	KIAA0319L	AAVR|AAVRL	KIAA0319 like	protein-coding
192267	chr6	20370521	20370780	+	0	NA	Intergenic	LTR33|LTR|ERVL	-31229	NM_001949	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
100602	chr17	63444851	63444950	+	0	NA	intron (NM_001915, intron 1 of 5)	AluSz|SINE|Alu	1284	NM_001017916	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
142938	chr20	18632201	18632630	+	0	NA	3' UTR (NM_001318043, exon 5 of 5)	3' UTR (NM_001318043, exon 5 of 5)	44361	NM_080820	92675		NM_080820	ENSG00000125821	DTD1	C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68	D-aminoacyl-tRNA deacylase 1	protein-coding
122160	chr19	48890571	48890730	+	0	NA	intron (NM_003323, intron 6 of 12)	intron (NM_003323, intron 6 of 12)	8094	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
94359	chr17	28910471	28910630	+	0	NA	intron (NM_001033561, intron 10 of 14)	intron (NM_001033561, intron 10 of 14)	-7471	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
174314	chr4	38653471	38653630	+	0	NA	intron (NR_026804, intron 1 of 7)	AluSc8|SINE|Alu	-10649	NM_016531	51274		NM_016531	ENSG00000109787	KLF3	BKLF	KLF transcription factor 3	protein-coding
222666	chr8	141201971	141202650	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	26264	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
193359	chr6	30319551	30320050	+	0	NA	intron (NR_024052, intron 1 of 4)	LTR29|LTR|ERV1	6334	NR_052012	414778		NR_052012	ENSG00000270604	HCG17	HCG18|LINC00046|NCRNA00046	HLA complex group 17	ncRNA
64789	chr14	34856171	34856330	+	0	NA	intron (NM_013448, intron 3 of 26)	intron (NM_013448, intron 3 of 26)	-17941	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
170883	chr3	193041101	193041380	+	0	NA	Intergenic	Intergenic	-123384	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
230254	chr9	127900701	127901530	+	0	NA	intron (NM_001287002, intron 1 of 5)	L1ME3F|LINE|L1	-1467	NM_001286999	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
2812	chr1	11014851	11015150	+	0	NA	intron (NM_007375, intron 2 of 5)	AluSc|SINE|Alu	2346	NM_007375	23435		NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding
17369	chr1	156529171	156529330	+	0	NA	intron (NM_178229, intron 34 of 37)	intron (NM_178229, intron 34 of 37)	-28475	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
62652	chr13	102392721	102393230	+	0	NA	intron (NM_001321949, intron 1 of 5)	L2c|LINE|L2	1544	NR_036486	283480		NR_036486	ENSG00000243319	FGF14-IT1	-	FGF14 intronic transcript 1	ncRNA
48711	chr12	10671521	10673100	+	0	NA	intron (NM_018423, intron 1 of 10)	Charlie3|DNA|hAT-Charlie	1742	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
179095	chr4	168478671	168479150	+	0	NA	intron (NM_001378070, intron 1 of 5)	intron (NM_001378070, intron 1 of 5)	1582	NM_001345927	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
181077	chr5	36739651	36740330	+	0	NA	Intergenic	Plat_L3|LINE|CR1	133384	NM_004172	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
151146	chr21	44910701	44912390	+	0	NA	intron (NM_001127491, intron 1 of 15)	intron (NM_001127491, intron 1 of 15)	9354	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
100952	chr17	64492401	64493830	+	0	NA	intron (NM_007215, intron 1 of 7)	intron (NM_007215, intron 1 of 7)	3939	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
11041	chr1	84989751	84990250	+	0	NA	intron (NM_001330647, intron 1 of 14)	intron (NM_001330647, intron 1 of 14)	7113	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
15049	chr1	148397171	148398400	+	0	NA	Intergenic	LTR49|LTR|ERV1	-4721	NR_168364	100132057		NR_033189	ENSG00000291232	PDE4DIPP6	-	PDE4DIP pseudogene 6	pseudo
163476	chr3	50637201	50637950	+	0	NA	intron (NM_001243926, intron 4 of 12)	AluYj4|SINE|Alu	20424	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
194563	chr6	33403851	33404150	+	0	NA	exon (NM_002263, exon 6 of 11).3	exon (NM_002263, exon 6 of 11).3	-7014	NR_027692	5252		NM_002636	ENSG00000112511	PHF1	MTF2L2|PCL1|PHF2|TDRD19C|hPHF1	PHD finger protein 1	protein-coding
14076	chr1	120847571	120847730	+	0	NA	Intergenic	CpG	3335	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
97629	chr17	44180551	44181230	+	0	NA	intron (NR_049729, intron 3 of 3)	SVA_F|Retroposon|SVA	5827	NR_049730	339201		NM_178542	ENSG00000267080	ASB16-AS1	C17orf65	ASB16 antisense RNA 1	ncRNA
178631	chr4	152221951	152222250	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-115574	NR_104273	102191832		NR_104273	ENSG00000270751	FBXW7-AS1	DEAR|DEspR	FBXW7 antisense RNA 1	ncRNA
164783	chr3	69206171	69206880	+	0	NA	intron (NM_015123, intron 11 of 22)	intron (NM_015123, intron 11 of 22)	-83930	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
139275	chr2	219484751	219485650	+	0	NA	intron (NM_005876, intron 30 of 40)	intron (NM_005876, intron 30 of 40)	-11155	NM_001286811	100996693		NM_001286811	ENSG00000286095	SPEGNB	-	SPEG neighbor	protein-coding
212443	chr7	128403521	128403780	+	0	NA	intron (NM_183243, intron 3 of 14)	intron (NM_183243, intron 3 of 14)	2345	NM_001142575	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
56384	chr12	113181621	113181880	+	0	NA	intron (NM_024072, intron 1 of 19)	intron (NM_024072, intron 1 of 19)	3728	NM_024072	79039		NM_024072	ENSG00000123064	DDX54	DP97	DEAD-box helicase 54	protein-coding
75747	chr15	68297901	68298150	+	0	NA	3' UTR (NM_001004439, exon 30 of 30)	3' UTR (NM_001004439, exon 30 of 30)	20280	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
93607	chr17	19142601	19143130	+	0	NA	intron (NM_001353418, intron 3 of 3)	MIR|SINE|MIR	15276	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
222698	chr8	141296921	141297900	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	10878	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
74298	chr15	58065751	58065850	+	0	NA	promoter-TSS (NM_003888)	promoter-TSS (NM_003888)	-89	NM_170696	8854		NM_003888	ENSG00000128918	ALDH1A2	DIH4|RALDH(II)|RALDH2|RALDH2-T	aldehyde dehydrogenase 1 family member A2	protein-coding
79660	chr16	1198871	1200580	+	0	NA	intron (NM_021098, intron 6 of 34)	intron (NM_021098, intron 6 of 34)	25543	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
193053	chr6	28634771	28634930	+	0	NA	Intergenic	Intergenic	-18673	NM_001329616	114821		NM_052923	ENSG00000232040	SCAND3	Buster4|FAM200D|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
142074	chr20	2449301	2449730	+	0	NA	Intergenic	L1MD1|LINE|L1	13532	NR_003684	100113378		NR_003684		SNORD119	-	small nucleolar RNA, C/D box 119	snoRNA
95182	chr17	35185821	35186080	+	0	NA	intron (NM_173167, intron 18 of 18)	MSTD|LTR|ERVL-MaLR	8443	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
63166	chr13	113666101	113666500	+	0	NA	promoter-TSS (NM_002929).2	promoter-TSS (NM_002929).2	-919	NM_002929	6011		NM_002929	ENSG00000185974	GRK1	GPRK1|RHOK|RK	G protein-coupled receptor kinase 1	protein-coding
191300	chr6	6658751	6659600	+	0	NA	Intergenic	Intergenic	-36349	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
171957	chr4	896271	896650	+	0	NA	exon (NM_005255, exon 7 of 28)	exon (NM_005255, exon 7 of 28)	35856	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
50935	chr12	49355501	49355900	+	0	NA	Intergenic	Intergenic	8812	NM_001304944	79962		NM_024902	ENSG00000178401	DNAJC22	wus	DnaJ heat shock protein family (Hsp40) member C22	protein-coding
123756	chr19	55082301	55082930	+	0	NA	intron (NM_133180, intron 12 of 19)	intron (NM_133180, intron 12 of 19)	2223	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
73414	chr15	43076601	43077000	+	0	NA	intron (NM_174916, intron 3 of 46)	SVA_E|Retroposon|SVA	29238	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
5996	chr1	26995821	26996500	+	0	NA	intron (NM_001013642, intron 1 of 1)	intron (NM_001013642, intron 1 of 1)	2468	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
98346	chr17	46289201	46289600	+	0	NA	intron (NM_001352769, intron 4 of 4)	AluJb|SINE|Alu	-5731	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
136745	chr2	181299471	181299830	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	6002	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
88522	chr16	85360571	85360930	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-54425	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
91015	chr17	2798201	2798400	+	0	NA	intron (NM_001100398, intron 1 of 23)	L2c|LINE|L2	1862	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
26329	chr10	15146471	15146830	+	0	NA	intron (NM_004808, intron 1 of 11)	MLT1J2|LTR|ERVL-MaLR	8697	NR_036506	100192204		NR_036506	ENSG00000206448	PPIAP30	-	peptidylprolyl isomerase A pseudogene 30	pseudo
79695	chr16	1290321	1290580	+	0	NA	Intergenic	Intergenic	-18702	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
85135	chr16	36837751	36837850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1091248	NR_033985	400533		NR_033985	ENSG00000261122	LINC02167	-	long intergenic non-protein coding RNA 2167	ncRNA
188374	chr5	151825321	151825630	+	0	NA	intron (NM_001146040, intron 8 of 8)	intron (NM_001146040, intron 8 of 8)	-53299	NR_132345	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
174087	chr4	28116701	28117180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-702642	NR_036237	100422937		NR_036237	ENSG00000283275	MIR4275	-	microRNA 4275	ncRNA
197804	chr6	87698471	87699050	+	0	NA	intron (NM_018064, intron 1 of 4)	intron (NM_018064, intron 1 of 4)	3473	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
87741	chr16	75218821	75219280	+	0	NA	promoter-TSS (NM_001906)	promoter-TSS (NM_001906)	62	NM_001329190	1504		NM_001906	ENSG00000168925	CTRB1	CTRB	chymotrypsinogen B1	protein-coding
33224	chr10	114086571	114086730	+	0	NA	Intergenic	Intergenic	42784	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
137155	chr2	191076671	191077280	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	55449	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
225400	chr9	35047451	35048230	+	0	NA	Intergenic	AluSz6|SINE|Alu	5600	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
28708	chr10	61733451	61733550	+	0	NA	intron (NM_173554, intron 4 of 6)	intron (NM_173554, intron 4 of 6)	70539	NM_173554	219621		NM_173554	ENSG00000183346	CABCOCO1	ARIEL|C10orf107	ciliary associated calcium binding coiled-coil 1	protein-coding
124236	chr19	57364951	57365250	+	0	NA	exon (NM_001355204, exon 2 of 2)	exon (NM_001355204, exon 2 of 2)	1549	NM_173631	284306		NM_173631	ENSG00000152433	ZNF547	MIP-2A|SEDLP1|TRAPPC2.19|TRAPPC2B|TRAPPC2P1	zinc finger protein 547	protein-coding
171607	chr3	197305701	197306250	+	0	NA	Intergenic	HAL1|LINE|L1	-6654	NM_001366203	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
43246	chr11	75524001	75524300	+	0	NA	intron (NM_030792, intron 1 of 16)	MIR3|SINE|MIR	1423	NM_001351168	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
1420	chr1	2577351	2577800	+	0	NA	intron (NR_121638, intron 1 of 3)	intron (NR_121638, intron 1 of 3)	-8948	NR_036637	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
180144	chr5	1346651	1347030	+	0	NA	Intergenic	Intergenic	-1741	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
153042	chr22	23272701	23272900	+	0	NA	intron (NM_021574, intron 6 of 21)	intron (NM_021574, intron 6 of 21)	10033	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
96770	chr17	41733801	41735650	+	0	NA	promoter-TSS (NM_001367462)	promoter-TSS (NM_001367462)	-79	NM_001079871	9001		NM_003949	ENSG00000173805	HAP1	HAP2|HIP5|HLP|hHLP1	huntingtin associated protein 1	protein-coding
134853	chr2	148667071	148667430	+	0	NA	intron (NM_015630, intron 1 of 13)	intron (NM_015630, intron 1 of 13)	22499	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
54035	chr12	75662871	75663030	+	0	NA	Intergenic	L3|LINE|CR1	-151341	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
25186	chr10	5566621	5566880	+	0	NA	Intergenic	Intergenic	29368	NR_134491	105376382		NR_134491	ENSG00000242147	LASTR	LINC02657	lncRNA associated with SART3 regulation of splicing	ncRNA
145969	chr20	46325021	46325330	+	0	NA	Intergenic	Intergenic	-16677	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
29077	chr10	67900121	67900650	+	0	NA	intron (NM_001142498, intron 3 of 7)	AluSx|SINE|Alu	8983	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
116177	chr19	17423551	17424130	+	0	NA	intron (NM_138401, intron 6 of 8)	intron (NM_138401, intron 6 of 8)	3793	NM_138401	93343		NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
235326	chrX	43559671	43559880	+	0	NA	Intergenic	Intergenic	-95132	NM_001270458	4128		NM_000240	ENSG00000189221	MAOA	BRNRS|MAO-A	monoamine oxidase A	protein-coding
221131	chr8	118309951	118310250	+	0	NA	intron (NM_001101676, intron 4 of 4)	L2c|LINE|L2	-198274	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
1883	chr1	6432551	6432850	+	0	NA	intron (NM_031475, intron 2 of 12)	intron (NM_031475, intron 2 of 12)	-2804	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
28342	chr10	46635271	46635880	+	0	NA	intron (NR_027632, intron 2 of 6)	(GCG)n|Simple_repeat|Simple_repeat	16401	NR_027632	414241		NM_001098846	ENSG00000165874	SHLD2P1	FAM35B|FAM35BP|FAM35EP|bA38L15.1	shieldin complex subunit 2 pseudogene 1	pseudo
200353	chr6	134063621	134064180	+	0	NA	Intergenic	Intergenic	-11276	NM_145176	154091		NM_145176	ENSG00000146411	SLC2A12	GLUT12|GLUT8	solute carrier family 2 member 12	protein-coding
86549	chr16	67188671	67189250	+	0	NA	intron (NM_178516, intron 3 of 13)	intron (NM_178516, intron 3 of 13)	1176	NM_178516	283849		NM_178516	ENSG00000179044	EXOC3L1	EXOC3L	exocyst complex component 3 like 1	protein-coding
153199	chr22	23853221	23853800	+	0	NA	intron (NR_003082, intron 4 of 4)	AluY|SINE|Alu	-3193	NR_104248	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
113119	chr19	8303721	8304350	+	0	NA	exon (NM_001165895, exon 2 of 4)	exon (NM_001165895, exon 2 of 4)	4323	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
178709	chr4	152679371	152680650	+	0	NA	promoter-TSS (NM_152680)	promoter-TSS (NM_152680)	-13	NM_152680	201799		NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding
50457	chr12	47741071	47741900	+	0	NA	intron (NM_001098532, intron 18 of 26)	intron (NM_001098532, intron 18 of 26)	-15995	NM_001172439	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
202055	chr6	154164421	154164680	+	0	NA	intron (NM_001130700, intron 11 of 11)	intron (NM_001130700, intron 11 of 11)	74788	NM_001285527	4988		NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor mu 1	protein-coding
168307	chr3	141556251	141556350	+	0	NA	intron (NM_006506, intron 7 of 23)	intron (NM_006506, intron 7 of 23)	69273	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
128869	chr2	64035051	64035600	+	0	NA	Intergenic	Intergenic	-15897	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
206448	chr7	32881551	32882200	+	0	NA	intron (NM_015483, intron 1 of 3)	MER46C|DNA|TcMar-Tigger	9885	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
107378	chr18	46055351	46056800	+	0	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	16185	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
87978	chr16	80577671	80577830	+	0	NA	Intergenic	Intergenic	-4942	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
59526	chr13	27169521	27169930	+	0	NA	TTS (NR_046547)	TTS (NR_046547)	2086	NM_182488	219333		NM_182488	ENSG00000152484	USP12	UBH1|USP12L1	ubiquitin specific peptidase 12	protein-coding
3758	chr1	16665801	16668730	+	0	NA	promoter-TSS (NR_004400).2	promoter-TSS (NR_004400).2	-317	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
159421	chr3	13552601	13553000	+	0	NA	intron (NM_001004019, intron 1 of 17)	intron (NM_001004019, intron 1 of 17)	3675	NM_001004019	2199		NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
96250	chr17	39841451	39841750	+	0	NA	intron (NM_183231, intron 1 of 5)	L1MC4|LINE|L1	22588	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
173812	chr4	17820401	17820600	+	0	NA	intron (NR_073124, intron 6 of 19)	AluY|SINE|Alu	9521	NM_022346	64151		NM_022346	ENSG00000109805	NCAPG	CAPG|CHCG|NY-MEL-3|YCG1	non-SMC condensin I complex subunit G	protein-coding
85514	chr16	50775601	50775800	+	0	NA	intron (NM_015247, intron 7 of 19)	MER103C|DNA|hAT-Charlie	-30972	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
46482	chr11	128318751	128319630	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	110424	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
163449	chr3	50601901	50603050	+	0	NA	Intergenic	Intergenic	9299	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
224806	chr9	23537471	23537650	+	0	NA	intron (NR_121602, intron 17 of 27)	intron (NR_121602, intron 17 of 27)	134839	NR_121602	101929563		NR_121602	ENSG00000283982	LOC101929563	-	uncharacterized LOC101929563	ncRNA
126508	chr2	28414921	28415800	+	0	NA	3' UTR (NM_005253, exon 4 of 4)	3' UTR (NM_005253, exon 4 of 4)	-20688	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
171365	chr3	196075351	196075550	+	0	NA	intron (NM_003234, intron 2 of 18)	intron (NM_003234, intron 2 of 18)	6640	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
233954	chrX	2610851	2610950	+	0	NA	intron (NR_033380, intron 1 of 8)	intron (NR_033380, intron 1 of 8)	1635	NR_033380	401577		NR_033380	ENSG00000291040	CD99P1	CD99L1|CXYorf12|MIC2R|NCRNA00103	CD99 molecule pseudogene 1	pseudo
62725	chr13	105165671	105165830	+	0	NA	Intergenic	MER73|LTR|ERVL	-300117	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
151179	chr21	45018521	45019580	+	0	NA	Intergenic	CpG	-14323	NR_024089	378825		NR_024089	ENSG00000275874	PICSAR	C21orf113|LINC00162|NCRNA00162|NLC1-C|NLC1C|PRED74	P38 inhibited cutaneous squamous cell carcinoma associated lincRNA	ncRNA
70264	chr14	101718421	101718680	+	0	NA	Intergenic	Intergenic	-11887	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
168801	chr3	152199051	152199930	+	0	NA	intron (NR_136178, intron 1 of 2)	intron (NR_136178, intron 1 of 2)	5939	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
83822	chr16	28842801	28843780	+	0	NA	TTS (NR_039872)	TTS (NR_039872)	717	NR_039872	100616256		NR_039872	ENSG00000283845	MIR4721	-	microRNA 4721	ncRNA
203561	chr7	897271	897730	+	0	NA	TTS (NM_001284311)	TTS (NM_001284311)	20946	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
232362	chr9	135773201	135773400	+	0	NA	intron (NM_020822, intron 19 of 30)	intron (NM_020822, intron 19 of 30)	71115	NM_020822	57582		NM_020822	ENSG00000107147	KCNT1	DEE14|EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
113060	chr19	8188301	8188500	+	0	NA	Intergenic	L1ME3A|LINE|L1	-20970	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
83993	chr16	29445701	29446900	+	0	NA	intron (NR_135316, intron 2 of 3)	AluJb|SINE|Alu	726	NR_135312	100422558		NR_135312	ENSG00000254634	SMG1P6	-	SMG1 pseudogene 6	pseudo
103252	chr17	77562251	77562800	+	0	NA	non-coding (NR_040050, exon 2 of 2)	non-coding (NR_040050, exon 2 of 2)	15584	NR_040050	100507351		NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
192139	chr6	16768771	16769900	+	0	NA	Intergenic	Intergenic	-7845	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
47072	chr12	567771	567930	+	0	NA	intron (NM_016533, intron 1 of 3)	AluSz6|SINE|Alu	18636	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
104732	chr17	81653651	81653750	+	0	NA	promoter-TSS (NM_001365725)	promoter-TSS (NM_001365725)	14	NM_001365725	5148		NM_002602	ENSG00000185527	PDE6G	PDEG|RP57	phosphodiesterase 6G	protein-coding
22817	chr1	224745521	224745980	+	0	NA	Intergenic	Intergenic	129433	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
149420	chr21	31213871	31214030	+	0	NA	intron (NM_001353694, intron 9 of 27)	AluJo|SINE|Alu	-53010	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
229595	chr9	123378871	123379230	+	0	NA	TTS (NM_020946)	TTS (NM_020946)	10271	NR_104603	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
233604	chrX	339221	340830	+	0	NA	intron (NM_013239, intron 10 of 12)	CpG-29373	20880	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
135374	chr2	160465401	160465850	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	28182	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
19152	chr1	171581521	171582000	+	0	NA	intron (NM_015172, intron 28 of 33)	intron (NM_015172, intron 28 of 33)	-38003	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
78247	chr15	90750121	90750780	+	0	NA	intron (NM_001287248, intron 3 of 21)	Tigger7|DNA|TcMar-Tigger	33104	NM_001287248	641		NM_000057	ENSG00000197299	BLM	BS|MGRISCE1|RECQ2|RECQL2|RECQL3	BLM RecQ like helicase	protein-coding
22034	chr1	210347071	210347460	+	0	NA	intron (NM_001170580, intron 1 of 11).2	L1MA7|LINE|L1	17899	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
120015	chr19	41939251	41939500	+	0	NA	Intergenic	MSR1|Satellite|Satellite	10555	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
68043	chr14	75227801	75228400	+	0	NA	Intergenic	L2c|LINE|L2	-50728	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
122313	chr19	49126421	49126680	+	0	NA	intron (NR_103842, intron 1 of 28)	AluSz|SINE|Alu	7006	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
161468	chr3	42247521	42247980	+	0	NA	Intergenic	Intergenic	16197	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
168665	chr3	150541651	150542280	+	0	NA	TTS (NM_014445)	TTS (NM_014445)	4531	NM_014445	27230		NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding
105540	chr17	83192551	83194680	+	0	NA	Intergenic	Intergenic	-33282	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
215041	chr7	152466451	152466900	+	0	NA	Intergenic	AluSx3|SINE|Alu	2551	NR_027387	100128822		NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
72649	chr15	38499651	38499980	+	0	NA	intron (NM_001128602, intron 13 of 15)	THE1C|LTR|ERVL-MaLR	45688	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
26127	chr10	13713051	13713150	+	0	NA	intron (NM_018027, intron 12 of 24)	MIR1_Amn|SINE|MIR	-5533	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
195196	chr6	36098951	36099600	+	0	NA	intron (NM_139014, intron 9 of 10)	intron (NM_139014, intron 9 of 10)	-31238	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
233703	chrX	1242851	1243730	+	0	NA	Intergenic	Intergenic	-25524	NM_172247	1438		NM_006140	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMCSFR-alpha|GMR|GMR-alpha|SMDP4|alphaGMR	colony stimulating factor 2 receptor subunit alpha	protein-coding
31287	chr10	92564871	92565330	+	0	NA	intron (NM_001322795, intron 1 of 25)	AluSx1|SINE|Alu	8406	NM_001322796	3416		NM_004969	ENSG00000119912	IDE	INSULYSIN	insulin degrading enzyme	protein-coding
45211	chr11	117827621	117829600	+	0	NA	promoter-TSS (NM_021603)	promoter-TSS (NM_021603)	-521	NM_021603	486		NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
41219	chr11	65694971	65695530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17002	NM_182710	10524		NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|NEDFASB|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
119527	chr19	40569671	40571210	+	0	NA	exon (NM_020971, exon 33 of 36)	exon (NM_020971, exon 33 of 36)	-6433	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
1353	chr1	2496201	2496700	+	0	NA	intron (NM_001303013, intron 13 of 21)	intron (NM_001303013, intron 13 of 21)	20135	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
100420	chr17	60599421	60601530	+	0	NA	exon (NM_003620, exon 1 of 6)	exon (NM_003620, exon 1 of 6)	282	NM_003620	8493		NM_003620	ENSG00000170836	PPM1D	IDDGIP|JDVS|PP2C-DELTA|WIP1	protein phosphatase, Mg2+/Mn2+ dependent 1D	protein-coding
18468	chr1	161607951	161608130	+	0	NA	non-coding (NR_024151, exon 1 of 1)	non-coding (NR_024151, exon 1 of 1)	1981	NR_024151	3311		NR_024151	ENSG00000225217	HSPA7	HSP70B	heat shock protein family A (Hsp70) member 7 (pseudogene)	pseudo
150224	chr21	41167671	41168280	+	0	NA	promoter-TSS (NM_138992)	promoter-TSS (NM_138992)	-185	NM_138991	25825		NM_012105	ENSG00000182240	BACE2	AEPLC|ALP56|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-secretase 2	protein-coding
197037	chr6	53344051	53344350	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	4750	NM_001301856	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
18100	chr1	160694621	160695150	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK-int|LTR|ERVK	16937	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
144457	chr20	35544151	35544730	+	0	NA	intron (NM_198398, intron 4 of 13)	intron (NM_198398, intron 4 of 13)	2362	NM_015966	51614		NM_015966	ENSG00000125991	ERGIC3	C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2	ERGIC and golgi 3	protein-coding
37503	chr11	18411451	18411550	+	0	NA	promoter-TSS (NM_002301)	promoter-TSS (NM_002301)	-806	NM_002301	3948		NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
198830	chr6	109094151	109096180	+	0	NA	promoter-TSS (NM_014454)	promoter-TSS (NM_014454)	2	NM_001350662	285753		NM_173830	ENSG00000183137	CEP57L1	C6orf182|bA487F23.2|cep57R	centrosomal protein 57 like 1	protein-coding
105273	chr17	82456571	82456730	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-1548	NM_001038618	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
167287	chr3	128646201	128647480	+	0	NA	intron (NM_002950, intron 1 of 9)	AluSx1|SINE|Alu	3978	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
211662	chr7	106270301	106271150	+	0	NA	intron (NM_005746, intron 4 of 10)	MLT1H|LTR|ERVL-MaLR	14258	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
122019	chr19	48611421	48613350	+	0	NA	intron (NM_017708, intron 3 of 6)	intron (NM_017708, intron 3 of 6)	2691	NM_017708	54854		NM_017708	ENSG00000105523	FAM83E	-	family with sequence similarity 83 member E	protein-coding
225622	chr9	36218171	36218800	+	0	NA	intron (NM_005476, intron 10 of 11)	intron (NM_005476, intron 10 of 11)	27564	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
25208	chr10	5709821	5710280	+	0	NA	intron (NM_017782, intron 1 of 20)	intron (NM_017782, intron 1 of 20)	25212	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
52846	chr12	57093901	57095330	+	0	NA	TTS (NM_001178081)	TTS (NM_001178081)	5501	NM_005967	4665		NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding
16014	chr1	152047571	152048930	+	0	NA	Intergenic	Intergenic	-11246	NM_005620	6282		NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
183097	chr5	74618451	74619030	+	0	NA	Intergenic	AluJb|SINE|Alu	-21283	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
161496	chr3	42528601	42528800	+	0	NA	intron (NM_004624, intron 6 of 12)	intron (NM_004624, intron 6 of 12)	3906	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
17167	chr1	156212651	156213850	+	0	NA	TTS (NM_001377388)	TTS (NM_001377388)	262	NM_001199653	11243		NM_007221	ENSG00000160783	PMF1	-	polyamine modulated factor 1	protein-coding
119845	chr19	41395251	41395550	+	0	NA	intron (NM_020158, intron 1 of 5)	intron (NM_020158, intron 1 of 5)	1959	NM_020158	56915		NM_020158	ENSG00000077348	EXOSC5	CABAC|RRP41B|RRP46|Rrp46p|hRrp46p|p12B	exosome component 5	protein-coding
195168	chr6	35871421	35871680	+	0	NA	intron (NR_034069, intron 8 of 15)	L1MB2|LINE|L1	49548	NM_003137	6732		NM_003137	ENSG00000096063	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
119370	chr19	40155771	40156330	+	0	NA	Intergenic	MER81|DNA|hAT-Blackjack	-35376	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
132963	chr2	111469751	111469850	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	25361	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
94157	chr17	28364801	28365200	+	0	NA	intron (NM_001080837, intron 1 of 2)	intron (NM_001080837, intron 1 of 2)	151	NM_001080837	645832		NM_001080837	ENSG00000274529	SEBOX	OG-9|OG9|OG9X	SEBOX homeobox	protein-coding
127117	chr2	37649721	37650300	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	21632	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
197210	chr6	63641051	63641880	+	0	NA	intron (NM_001290260, intron 1 of 3)	intron (NM_001290260, intron 1 of 3)	4984	NM_001290260	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
155356	chr22	38281371	38281730	+	0	NA	Intergenic	AluSg|SINE|Alu	-8540	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
222283	chr8	133451071	133452250	+	0	NA	Intergenic	Intergenic	120227	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
5761	chr1	26483471	26484050	+	0	NA	Intergenic	MER41A|LTR|ERV1	11320	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
218578	chr8	55780471	55780630	+	0	NA	intron (NM_001363184, intron 1 of 11)	L1MC4|LINE|L1	7104	NM_024831	96764		NM_024831	ENSG00000137574	TGS1	NCOA6IP|PIMT|PIPMT	trimethylguanosine synthase 1	protein-coding
62917	chr13	111114351	111116080	+	0	NA	5' UTR (NM_001354046, exon 1 of 22)	5' UTR (NM_001354046, exon 1 of 22)	463	NR_046667	100874238		NR_046667	ENSG00000235875	ARHGEF7-AS2	-	ARHGEF7 antisense RNA 2	ncRNA
204051	chr7	1950171	1950330	+	0	NA	intron (NM_001304524, intron 14 of 16)	MIRb|SINE|MIR	-9679	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
208911	chr7	74030071	74030250	+	0	NA	intron (NM_001278918, intron 1 of 27)	intron (NM_001278918, intron 1 of 27)	1987	NM_001278917	2006		NM_000501	ENSG00000049540	ELN	ADCL1|SVAS|WBS|WS	elastin	protein-coding
114550	chr19	12880071	12880230	+	0	NA	intron (NM_001375, intron 3 of 5)	AluJb|SINE|Alu	1299	NM_001375	1777		NM_001375	ENSG00000105612	DNASE2	AIPCS|DNASE2A|DNL|DNL2	deoxyribonuclease 2, lysosomal	protein-coding
222912	chr8	142843201	142843400	+	0	NA	intron (NM_002066, intron 3 of 3)	L1ME3A|LINE|L1	8499	NM_002066	2765		NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
181226	chr5	39183501	39183900	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	35863	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
4447	chr1	21326851	21327230	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	18464	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
6249	chr1	27556771	27558230	+	0	NA	intron (NM_001029882, intron 3 of 6)	intron (NM_001029882, intron 3 of 6)	45994	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
89317	chr16	88727251	88727550	+	0	NA	intron (NM_001142864, intron 23 of 50)	CpG-10174	-3780	NR_103774	100289580		NM_207451		HSALR1	-	HSP90AB1 associated lncRNA 1	ncRNA
26099	chr10	13298301	13298600	+	0	NA	intron (NM_006214, intron 1 of 8)	AluSx|SINE|Alu	1296	NM_001037537	5264		NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
77910	chr15	89240251	89240550	+	0	NA	Intergenic	Intergenic	-3579	NM_001113378	55215		NM_018193	ENSG00000140525	FANCI	KIAA1794	FA complementation group I	protein-coding
224587	chr9	20271251	20271350	+	0	NA	Intergenic	Intergenic	139938	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
161837	chr3	45687351	45687750	+	0	NA	intron (NR_033947, intron 1 of 2)	AluSc8|SINE|Alu	1332	NR_033947	644714		NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
16837	chr1	155664701	155665180	+	0	NA	intron (NM_139119, intron 9 of 10)	AluY|SINE|Alu	14315	NR_132762	106633810		NR_132762		SCARNA26A	-	small Cajal body-specific RNA 26A	ncRNA
24220	chr1	236140021	236140280	+	0	NA	Intergenic	Intergenic	-2389	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
190135	chr5	178069771	178070400	+	0	NA	Intergenic	MIR3|SINE|MIR	-43447	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
201981	chr6	152279471	152279980	+	0	NA	intron (NM_033071, intron 96 of 145)	AluJb|SINE|Alu	-94347	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
71802	chr15	21737921	21738280	+	0	NA	Intergenic	Intergenic	-2101	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
11610	chr1	91701071	91701230	+	0	NA	intron (NR_036634, intron 15 of 17)	intron (NR_036634, intron 15 of 17)	185001	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
42107	chr11	67588321	67588580	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	4638	NM_000852	2950		NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
181157	chr5	39004651	39004950	+	0	NA	intron (NM_001285439, intron 3 of 38)	AluSp|SINE|Alu	69599	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
155143	chr22	37660851	37661930	+	0	NA	intron (NM_020315, intron 1 of 1)	intron (NM_020315, intron 1 of 1)	2667	NM_020315	57026		NM_020315	ENSG00000241360	PDXP	CIN|PLP|dJ37E16.5	pyridoxal phosphatase	protein-coding
17855	chr1	159927651	159927750	+	0	NA	intron (NM_001135050, intron 20 of 20)	intron (NM_001135050, intron 20 of 20)	-2193	NM_003564	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
225711	chr9	36728821	36729250	+	0	NA	Intergenic	Intergenic	94564	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA
93774	chr17	20234101	20234650	+	0	NA	intron (NM_001243438, intron 5 of 5)	intron (NM_001243438, intron 5 of 5)	78303	NM_001033554	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
97576	chr17	44096871	44097380	+	0	NA	intron (NM_001382393, intron 3 of 26)	intron (NM_001382393, intron 3 of 26)	-18787	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
131922	chr2	98874901	98875610	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	60970	NM_207362	343990		NM_207362	ENSG00000196872	CRACDL	C2orf55|KIAA1211L	CRACD like	protein-coding
99494	chr17	50192301	50192500	+	0	NA	intron (NM_000088, intron 29 of 50)	intron (NM_000088, intron 29 of 50)	9231	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
28928	chr10	63190951	63191250	+	0	NA	exon (NM_001318154, exon 17 of 26)	exon (NM_001318154, exon 17 of 26)	57772	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
103296	chr17	77857571	77857800	+	0	NA	Intergenic	Intergenic	26402	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
92580	chr17	9234021	9234430	+	0	NA	intron (NM_004822, intron 6 of 6)	intron (NM_004822, intron 6 of 6)	-55107	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
94865	chr17	31514701	31515100	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	-19983	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
110745	chr19	2336871	2337050	+	0	NA	intron (NM_152988, intron 2 of 14)	(TG)n|Simple_repeat|Simple_repeat	8276	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
93615	chr17	19152621	19152900	+	0	NA	intron (NM_001353418, intron 3 of 3)	L3|LINE|CR1	9864	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
212623	chr7	129271401	129272160	+	0	NA	intron (NM_001130720, intron 1 of 16)	L1MEi|LINE|L1	46750	NM_001130720	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
4048	chr1	18996721	18997030	+	0	NA	Intergenic	Intergenic	-40199	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
208349	chr7	66505001	66505400	+	0	NA	Intergenic	CpG	11509	NR_134571	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
138347	chr2	203880421	203880880	+	0	NA	Intergenic	L3|LINE|CR1	12879	NM_001037631	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
123547	chr19	54373771	54374200	+	0	NA	Intergenic	Intergenic	-3429	NM_001289026	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
118271	chr19	35271221	35271500	+	0	NA	intron (NM_001321150, intron 5 of 7)	intron (NM_001321150, intron 5 of 7)	2398	NM_207291	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
30999	chr10	88279151	88279450	+	0	NA	intron (NM_018363, intron 6 of 6)	intron (NM_018363, intron 6 of 6)	304018	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
138223	chr2	202758801	202759000	+	0	NA	intron (NM_173511, intron 6 of 7)	intron (NM_173511, intron 6 of 7)	70334	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
232671	chr9	136510101	136510750	+	0	NA	intron (NM_017617, intron 17 of 33)	intron (NM_017617, intron 17 of 33)	9201	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
105502	chr17	83097271	83097450	+	0	NA	Intergenic	Intergenic	16214	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
139933	chr2	230785451	230785550	+	0	NA	intron (NM_016289, intron 2 of 8)	intron (NM_016289, intron 2 of 8)	71952	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
201224	chr6	143560901	143561500	+	0	NA	non-coding (NR_110148, exon 2 of 5)	non-coding (NR_110148, exon 2 of 5)	851	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
55472	chr12	104689471	104689630	+	0	NA	intron (NM_018413, intron 2 of 2)	L2c|LINE|L2	97917	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
42534	chr11	71451451	71454000	+	0	NA	promoter-TSS (NM_018161)	promoter-TSS (NM_018161)	-478	NM_018161	55191		NM_018161	ENSG00000172890	NADSYN1	VCRL3	NAD synthetase 1	protein-coding
94890	chr17	31541551	31542350	+	0	NA	Intergenic	Intergenic	7067	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
72016	chr15	28093901	28095430	+	0	NA	intron (NM_000275, intron 1 of 23)	CpG	4650	NM_000275	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
784	chr1	1535601	1535800	+	0	NA	exon (NM_001114748, exon 3 of 4)	exon (NM_001114748, exon 3 of 4)	4924	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
27572	chr10	32363601	32364100	+	0	NA	intron (NR_104163, intron 1 of 1)	intron (NR_104163, intron 1 of 1)	14919	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
82231	chr16	15030921	15031750	+	0	NA	intron (NM_001324020, intron 16 of 16)	intron (NM_001324020, intron 16 of 16)	-20938	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
170944	chr3	194332021	194332750	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	18943	NM_001080513	1370		NM_001309	ENSG00000178772	CPN2	ACBP	carboxypeptidase N subunit 2	protein-coding
211908	chr7	112302701	112302930	+	0	NA	intron (NM_021994, intron 4 of 11)	MIRc|SINE|MIR	96120	NM_021994	11179		NM_021994	ENSG00000198839	ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
200179	chr6	130758651	130759080	+	0	NA	Intergenic	Intergenic	-68541	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
21180	chr1	203795121	203796900	+	0	NA	intron (NM_001376336, intron 1 of 16)	CpG	387	NM_001350262	9877		NM_014827	ENSG00000058673	ZC3H11A	ZC3HDC11A	zinc finger CCCH-type containing 11A	protein-coding
130177	chr2	82529471	82530030	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-327053	NR_033423	1720		NR_033423		DHFRP3	-	dihydrofolate reductase pseudogene 3	pseudo
195152	chr6	35725701	35727200	+	0	NA	TTS (NR_027117)	TTS (NR_027117)	2133	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
231029	chr9	129604121	129605250	+	0	NA	Intergenic	Intergenic	-4199	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
56697	chr12	120078751	120079330	+	0	NA	intron (NR_147892, intron 8 of 11)	intron (NR_147892, intron 8 of 11)	37713	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
101027	chr17	64783221	64783680	+	0	NA	Intergenic	Intergenic	-1451	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
36220	chr11	3579301	3579500	+	0	NA	Intergenic	MIRb|SINE|MIR	-7413	NR_126335	101927708		NR_126335	ENSG00000255367	LOC101927708	-	uncharacterized LOC101927708	ncRNA
10753	chr1	76302821	76303100	+	0	NA	intron (NM_001349108, intron 1 of 3)	MER51A|LTR|ERV1	228214	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
215282	chr7	157137221	157137630	+	0	NA	Intergenic	AluSx|SINE|Alu	-1501	NM_014671	9690		NM_014671	ENSG00000009335	UBE3C	HECTH2|NDSMBA|NEDSMBA|RAUL	ubiquitin protein ligase E3C	protein-coding
121772	chr19	47767501	47767900	+	0	NA	intron (NR_132382, intron 1 of 2)	intron (NR_132382, intron 1 of 2)	1140	NR_132382	106144593		NR_132382	ENSG00000269656	NOP53-AS1	GLTSCR2-AS1	NOP53 antisense RNA 1	ncRNA
34099	chr10	125820871	125821230	+	0	NA	intron (NR_136677, intron 1 of 10)	L1ME4a|LINE|L1	1310	NR_039704	100616327		NR_039704	ENSG00000265092	MIR4484	mir-4484	microRNA 4484	ncRNA
32385	chr10	102415771	102415930	+	0	NA	intron (NM_001270965, intron 4 of 17)	MIR3|SINE|MIR	2935	NM_002779	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
166705	chr3	120599451	120599780	+	0	NA	intron (NM_004547, intron 1 of 2)	intron (NM_004547, intron 1 of 2)	3279	NM_001168331	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
211658	chr7	106267621	106268330	+	0	NA	intron (NM_005746, intron 6 of 10)	intron (NM_005746, intron 6 of 10)	17008	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
50316	chr12	46582471	46582630	+	0	NA	intron (NR_125377, intron 3 of 3)	L1PA6|LINE|L1	198443	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
60259	chr13	40596451	40597080	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	69876	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
185841	chr5	132471251	132472170	+	0	NA	intron (NR_161242, intron 3 of 3)	MIRc|SINE|MIR	19063	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
218455	chr8	48011651	48012150	+	0	NA	intron (NM_003350, intron 1 of 3)	AluJo|SINE|Alu	3469	NM_003350	7336		NM_003350	ENSG00000169139	UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin conjugating enzyme E2 V2	protein-coding
215913	chr8	8198851	8199330	+	0	NA	intron (NR_147089, intron 2 of 3)	HERVK-int|LTR|ERVK	28413	NR_147089	105379219		NR_147089		FAM85B	lncRNA-HEIM	family with sequence similarity 85 member B	ncRNA
75585	chr15	67087771	67087930	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	22248	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
76410	chr15	74762501	74762900	+	0	NA	Intergenic	Intergenic	13855	NM_000761	1544		NM_000761	ENSG00000140505	CYP1A2	CP12|CYPIA2|P3-450|P450(PA)	cytochrome P450 family 1 subfamily A member 2	protein-coding
117576	chr19	21474471	21475150	+	0	NA	Intergenic	CpG	-8905	NR_037194	400680		NR_037194	ENSG00000268658	LINC00664	-	long intergenic non-protein coding RNA 664	ncRNA
858	chr1	1618851	1618950	+	0	NA	intron (NM_001170687, intron 2 of 19)	intron (NM_001170687, intron 2 of 19)	3045	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
212724	chr7	129824951	129826250	+	0	NA	Intergenic	CpG	-50586	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
231323	chr9	130126921	130127410	+	0	NA	intron (NM_001136557, intron 17 of 19)	intron (NM_001136557, intron 17 of 19)	17054	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
116057	chr19	17220951	17221050	+	0	NA	Intergenic	AluJb|SINE|Alu	-5226	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
140980	chr2	237978251	237978550	+	0	NA	intron (NR_103500, intron 3 of 10)	intron (NR_103500, intron 3 of 10)	9607	NM_001278305	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
47982	chr12	6901971	6902350	+	0	NA	Intergenic	AluSq|SINE|Alu	-2662	NM_006992	10233		NM_006992	ENSG00000010626	LRRC23	LRPB7	leucine rich repeat containing 23	protein-coding
108324	chr18	63831171	63831330	+	0	NA	Intergenic	Intergenic	53473	NM_001261830	8710		NM_003784	ENSG00000166396	SERPINB7	MEGSIN|PPKN|TP55	serpin family B member 7	protein-coding
18931	chr1	168470871	168471800	+	0	NA	intron (NR_125956, intron 4 of 4)	intron (NR_125956, intron 4 of 4)	24309	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
46599	chr11	128530171	128530400	+	0	NA	TTS (NR_120581)	TTS (NR_120581)	4143	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
202175	chr6	155530271	155530430	+	0	NA	Intergenic	Intergenic	15506	NR_134596	105378068		NR_134596		LOC105378068	-	uncharacterized LOC105378068	ncRNA
80527	chr16	2764401	2764600	+	0	NA	exon (NM_016333, exon 11 of 15)	exon (NM_016333, exon 11 of 15)	11862	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
101249	chr17	66300321	66300680	+	0	NA	Intergenic	Intergenic	-2113	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
231247	chr9	129985521	129985980	+	0	NA	intron (NM_001363755, intron 2 of 15)	AluSq2|SINE|Alu	57439	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
165215	chr3	72887721	72888780	+	0	NA	exon (NM_001080393, exon 1 of 7)	exon (NM_001080393, exon 1 of 7)	204	NM_001080393	727936		NM_001080393	ENSG00000172986	GXYLT2	GLT8D4	glucoside xylosyltransferase 2	protein-coding
211371	chr7	105003221	105004280	+	0	NA	Intergenic	Intergenic	10391	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
126337	chr2	27373121	27373750	+	0	NA	intron (NR_049788, intron 2 of 11)	AluSx1|SINE|Alu	2819	NR_049788	9784		NM_014748	ENSG00000115234	SNX17	-	sorting nexin 17	protein-coding
199169	chr6	111748501	111748700	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	10531	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
161452	chr3	42148101	42148300	+	0	NA	intron (NM_001042646, intron 2 of 15)	MER20|DNA|hAT-Charlie	-1035	NM_001349249	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
40403	chr11	64059321	64059780	+	0	NA	intron (NM_001384466, intron 1 of 2)	intron (NM_001384466, intron 1 of 2)	22868	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
170022	chr3	180961101	180961400	+	0	NA	intron (NM_001013438, intron 10 of 15)	AluJr|SINE|Alu	28268	NM_001190233	131118		NM_145261	ENSG00000205981	DNAJC19	PAM18|TIM14|TIMM14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding
206628	chr7	35908501	35908700	+	0	NA	Intergenic	Intergenic	107381	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
53380	chr12	64683171	64683330	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-60645	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
65230	chr14	49860471	49860630	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	2299	NR_027260	378706		NR_027260	ENSG00000274012	RN7SL2	7L1C|7L30.1|7SL1c|RNSRP2	RNA component of signal recognition particle 7SL2	scRNA
239332	chrY	19075871	19076330	+	0	NA	promoter-TSS (NR_158640)	promoter-TSS (NR_158640)	-71	NR_158641	83869		NM_031932	ENSG00000176728	TTTY14	CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14	testis expressed transcript, Y-linked 14	ncRNA
83296	chr16	24152251	24152350	+	0	NA	intron (NM_212535, intron 9 of 16)	THE1B|LTR|ERVL-MaLR	-50816	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
8717	chr1	42380301	42381250	+	0	NA	promoter-TSS (NM_173642)	promoter-TSS (NM_173642)	-17	NM_173642	284716		NM_173642	ENSG00000177181	RIMKLA	FAM80A|NAAGS|NAAGS-II|NAAGS2	ribosomal modification protein rimK like family member A	protein-coding
150981	chr21	44334951	44335150	+	0	NA	intron (NM_001271440, intron 3 of 6)	intron (NM_001271440, intron 3 of 6)	3288	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
213897	chr7	142470501	142470700	+	0	NA	intron (NM_001363538, intron 11 of 11)	L2c|LINE|L2	-3927	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
226080	chr9	62660851	62661650	+	0	NA	Intergenic	L1P3|LINE|L1	128688	NR_147619	103908604		NR_147619		FAM88F	-	family with sequence similarity 88 member F	ncRNA
35467	chr11	1469771	1469930	+	0	NA	3' UTR (NM_001172223, exon 5 of 5)	3' UTR (NM_001172223, exon 5 of 5)	11036	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
28364	chr10	47206571	47207550	+	0	NA	Intergenic	Intergenic	-93137	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
47791	chr12	6571671	6571830	+	0	NA	intron (NM_001273, intron 38 of 39)	AluSq2|SINE|Alu	-3459	NM_001258308	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
54804	chr12	94603421	94603770	+	0	NA	intron (NM_020698, intron 1 of 3)	L1ME3|LINE|L1	12406	NM_001301036	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
187328	chr5	141644101	141644330	+	0	NA	intron (NM_033449, intron 17 of 19)	intron (NM_033449, intron 17 of 19)	7203	NM_033449	89848		NM_033449	ENSG00000197948	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
109980	chr19	1404601	1405350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2611	NM_170711	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
59861	chr13	30614721	30614980	+	0	NA	intron (NM_001370340, intron 1 of 4)	AluSg4|SINE|Alu	2737	NM_001370340	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
91007	chr17	2786001	2787080	+	0	NA	intron (NM_001330058, intron 1 of 24)	intron (NM_001330058, intron 1 of 24)	9782	NM_001330058	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
177295	chr4	109596771	109596930	+	0	NA	intron (NM_017918, intron 1 of 7)	SVA_D|Retroposon|SVA	36604	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
157682	chr22	46294701	46295000	+	0	NA	TTS (NR_024009)	TTS (NR_024009)	1810	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
213436	chr7	138502401	138502600	+	0	NA	intron (NM_015905, intron 1 of 18)	MIRb|SINE|MIR	42241	NM_003852	8805		NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
144832	chr20	36858201	36858400	+	0	NA	intron (NM_080627, intron 1 of 14)	intron (NM_080627, intron 1 of 14)	1573	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
58452	chr12	132082801	132083000	+	0	NA	Intergenic	Intergenic	-1383	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
39836	chr11	62171121	62171580	+	0	NA	Intergenic	Intergenic	-18866	NM_006552	10648		NM_006552	ENSG00000168515	SCGB1D1	LIPA|LPHA|LPNA	secretoglobin family 1D member 1	protein-coding
34127	chr10	128013621	128013880	+	0	NA	intron (NM_001323354, intron 1 of 19)	MLT1A0|LTR|ERVL-MaLR	15603	NM_001323354	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
232358	chr9	135702871	135703030	+	0	NA	intron (NM_001272003, intron 1 of 30)	intron (NM_001272003, intron 1 of 30)	765	NM_020822	57582		NM_020822	ENSG00000107147	KCNT1	DEE14|EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
162091	chr3	46896171	46896430	+	0	NA	intron (NM_001184744, intron 4 of 14)	intron (NM_001184744, intron 4 of 14)	14051	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
20347	chr1	197903851	197903950	+	0	NA	intron (NM_001024594, intron 1 of 2)	intron (NM_001024594, intron 1 of 2)	1270	NM_001024594	388722		NM_001024594	ENSG00000203724	C1orf53	-	chromosome 1 open reading frame 53	protein-coding
196184	chr6	42638571	42639130	+	0	NA	intron (NM_001363705, intron 15 of 46)	AluYk3|SINE|Alu	74821	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
112749	chr19	7388751	7389250	+	0	NA	intron (NM_001367823, intron 10 of 28)	AluJb|SINE|Alu	-6145	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
137075	chr2	190911471	190912400	+	0	NA	intron (NM_014905, intron 7 of 17)	intron (NM_014905, intron 7 of 17)	31114	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
68121	chr14	75498951	75499450	+	0	NA	Intergenic	Intergenic	-23269	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
103268	chr17	77695951	77696250	+	0	NA	Intergenic	Intergenic	32459	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
13641	chr1	116502771	116502930	+	0	NA	Intergenic	Intergenic	-24024	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
125185	chr2	10117971	10118830	+	0	NA	Intergenic	Intergenic	-4168	NM_001165931	6241		NM_001034	ENSG00000171848	RRM2	C2orf48|R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
216254	chr8	12428571	12429730	+	0	NA	intron (NR_148877, intron 2 of 4).2	intron (NR_148877, intron 2 of 4).2	7148	NR_148878	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
226201	chr9	65380471	65380630	+	0	NA	Intergenic	LTR77|LTR|ERV1	-95341	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
58234	chr12	128671651	128671750	+	0	NA	intron (NM_001136103, intron 5 of 8)	intron (NM_001136103, intron 5 of 8)	152258	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
123825	chr19	55209001	55209430	+	0	NA	intron (NM_001161440, intron 1 of 17)	intron (NM_001161440, intron 1 of 17)	286	NM_002842	5794		NM_002842	ENSG00000080031	PTPRH	R-PTP-H|SAP1	protein tyrosine phosphatase receptor type H	protein-coding
59168	chr13	21668871	21672330	+	0	NA	promoter-TSS (NM_002010)	promoter-TSS (NM_002010)	-473	NM_002010	2254		NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
59400	chr13	25171351	25171800	+	0	NA	exon (NM_199138, exon 2 of 3)	exon (NM_199138, exon 2 of 3)	592	NM_199138	219287		NM_152704	ENSG00000165566	AMER2	FAM123A	APC membrane recruitment protein 2	protein-coding
142154	chr20	2809101	2809300	+	0	NA	Intergenic	LTR14C|LTR|ERVK	-5787	NM_001256538	128653		NM_080739	ENSG00000258713	C20orf141	dJ860F19.4	chromosome 20 open reading frame 141	protein-coding
193173	chr6	29712771	29713280	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-10315	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
68828	chr14	91272801	91273550	+	0	NA	exon (NM_001080414, exon 30 of 30)	exon (NM_001080414, exon 30 of 30)	-19295	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
3133	chr1	12448871	12450230	+	0	NA	intron (NM_018156, intron 64 of 68)	intron (NM_018156, intron 64 of 68)	-57696	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
208043	chr7	55966001	55966580	+	0	NA	intron (NM_001202469, intron 1 of 7)	intron (NM_001202469, intron 1 of 7)	1705	NM_001202469	2631		NM_001483	ENSG00000146729	NIPSNAP2	GBAS	nipsnap homolog 2	protein-coding
131044	chr2	88265471	88266030	+	0	NA	Intergenic	Intergenic	95404	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
115312	chr19	14780651	14780850	+	0	NA	Intergenic	Intergenic	-2190	NM_013447	30817		NM_013447	ENSG00000127507	ADGRE2	CD312|CD97|EMR2|VBU	adhesion G protein-coupled receptor E2	protein-coding
155392	chr22	38319471	38320550	+	0	NA	intron (NM_001289912, intron 5 of 14)	intron (NM_001289912, intron 5 of 14)	-1926	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
48633	chr12	10389671	10390450	+	0	NA	promoter-TSS (NM_007360)	promoter-TSS (NM_007360)	-19	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
37659	chr11	22781051	22781380	+	0	NA	intron (NM_001351224, intron 8 of 8)	intron (NM_001351224, intron 8 of 8)	48164	NR_135213	258010		NM_148893	ENSG00000198168	SVIP	-	small VCP interacting protein	protein-coding
117549	chr19	21024601	21025300	+	0	NA	intron (NM_025189, intron 2 of 4)	intron (NM_025189, intron 2 of 4)	4293	NM_025189	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
191193	chr6	5279271	5279430	+	0	NA	intron (NM_001374876, intron 2 of 7)	AluSc8|SINE|Alu	17837	NM_001374879	10667		NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
229114	chr9	114399971	114400630	+	0	NA	Intergenic	Intergenic	-5895	NM_030767	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
234675	chrX	20252421	20253480	+	0	NA	intron (NM_004586, intron 1 of 21)	L1MD2|LINE|L1	13959	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
131450	chr2	96332351	96332850	+	0	NA	Intergenic	AluYm1|SINE|Alu	-3166	NM_001281710	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
173244	chr4	6952771	6952930	+	0	NA	intron (NM_020773, intron 2 of 13)	AluSx1|SINE|Alu	-1316	NM_001330638	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
149996	chr21	36980421	36981280	+	0	NA	promoter-TSS (NM_001352516)	promoter-TSS (NM_001352516)	47	NM_001352516	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
20149	chr1	192585551	192585850	+	0	NA	Intergenic	Intergenic	9927	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
34329	chr10	132168721	132169180	+	0	NA	3' UTR (NM_001323086, exon 23 of 24)	3' UTR (NM_001323086, exon 23 of 24)	-17998	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
100640	chr17	63686171	63686730	+	0	NA	intron (NM_002401, intron 8 of 15)	intron (NM_002401, intron 8 of 15)	13675	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
184748	chr5	109788671	109788830	+	0	NA	intron (NM_002372, intron 10 of 21)	intron (NM_002372, intron 10 of 21)	-94432	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
200146	chr6	130322321	130322950	+	0	NA	intron (NM_001258275, intron 1 of 13)	AluSx|SINE|Alu	43233	NM_001258275	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
169087	chr3	154253001	154253260	+	0	NA	exon (NM_015595, exon 13 of 15)	exon (NM_015595, exon 13 of 15)	71357	NM_020865	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
45	chr1	199001	200480	+	0	NA	Intergenic	CpG	6857	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
146544	chr20	49980921	49981580	+	0	NA	Intergenic	L2a|LINE|L2	-1730	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
87088	chr16	68469271	68469430	+	0	NA	Intergenic	Intergenic	-20842	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
163629	chr3	52055501	52056000	+	0	NA	intron (NM_001947, intron 1 of 2)	CpG	821	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
21833	chr1	207343071	207343230	+	0	NA	intron (NM_001114752, intron 10 of 10)	L1MA4A|LINE|L1	21472	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
13010	chr1	111188521	111188980	+	0	NA	exon (NM_024901, exon 10 of 12)	exon (NM_024901, exon 10 of 12)	11896	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
211877	chr7	111084671	111084830	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-6256	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
126831	chr2	30763351	30763450	+	0	NA	intron (NM_144575, intron 6 of 22)	intron (NM_144575, intron 6 of 22)	44046	NM_144575	92291		NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
180470	chr5	10962071	10962630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-201116	NM_001291963	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
208376	chr7	66653071	66653230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1369	NR_110037	100996437		NR_110037	ENSG00000226824	LOC100996437	-	uncharacterized LOC100996437	ncRNA
224818	chr9	26908101	26908300	+	0	NA	intron (NM_001321546, intron 11 of 12)	AluY|SINE|Alu	-15372	NM_001167575	79886		NM_024828	ENSG00000120159	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
43943	chr11	93543221	93543780	+	0	NA	promoter-TSS (NM_020179)	promoter-TSS (NM_020179)	-109	NM_020179	56935		NM_020179	ENSG00000166002	SMCO4	C11orf75|FN5	single-pass membrane protein with coiled-coil domains 4	protein-coding
154989	chr22	37305271	37305850	+	0	NA	intron (NM_001318024, intron 8 of 12)	intron (NM_001318024, intron 8 of 12)	23052	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
71793	chr15	21718801	21719850	+	0	NA	Intergenic	Intergenic	-1018	NR_135695	102724760		NR_135695		LOC102724760	-	immunoglobulin heavy variable 1/OR15-1 pseudogene	pseudo
5869	chr1	26748171	26748330	+	0	NA	intron (NM_139135, intron 4 of 19)	intron (NM_139135, intron 4 of 19)	-38804	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
22491	chr1	221732121	221732650	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	4515	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
22805	chr1	224617501	224617700	+	0	NA	intron (NM_152495, intron 1 of 5)	CpG	1283	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
78965	chr15	101397571	101397930	+	0	NA	intron (NM_138319, intron 7 of 20)	intron (NM_138319, intron 7 of 20)	63313	NR_132373	105371027		NR_132373	ENSG00000259764	PCSK6-AS1	-	PCSK6 antisense RNA 1	ncRNA
45374	chr11	118304171	118305300	+	0	NA	promoter-TSS (NM_000733)	promoter-TSS (NM_000733)	5	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
126516	chr2	28423021	28423280	+	0	NA	Intergenic	L2b|LINE|L2	-28478	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
100996	chr17	64638851	64639150	+	0	NA	intron (NM_022739, intron 1 of 18)	Arthur1B|DNA|hAT-Tip100	23307	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
159641	chr3	15309671	15310100	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	22701	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
29987	chr10	73745701	73746130	+	0	NA	intron (NM_198597, intron 1 of 22)	AluSg|SINE|Alu	1543	NM_198597	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
149640	chr21	33541251	33542300	+	0	NA	intron (NM_001136006, intron 1 of 21)	intron (NM_001136006, intron 1 of 21)	342	NM_175085	2618		NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase	protein-coding
86478	chr16	66975901	66976300	+	0	NA	TTS (NM_024922)	TTS (NM_024922)	8625	NM_001185176	23491		NM_012122	ENSG00000172828	CES3	ES31	carboxylesterase 3	protein-coding
59679	chr13	29077471	29077630	+	0	NA	intron (NM_001366651, intron 4 of 14)	intron (NM_001366651, intron 4 of 14)	257211	NM_001366651	23281		NM_015233	ENSG00000132938	MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated scaffold protein 2	protein-coding
199010	chr6	111057301	111057600	+	0	NA	Intergenic	L1ME4b|LINE|L1	-9896	NR_002932	442245		NR_002932		GSTM2P1	-	glutathione S-transferase mu 2 pseudogene 1	pseudo
213391	chr7	135981961	135982700	+	0	NA	Intergenic	MER4C|LTR|ERV1	-4971	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
70242	chr14	101457701	101458100	+	0	NA	Intergenic	CpG	15824	NR_135240	100507277		NR_135240	ENSG00000259082	LINC02314	-	long intergenic non-protein coding RNA 2314	ncRNA
15616	chr1	150618171	150618800	+	0	NA	Intergenic	AluSz6|SINE|Alu	10648	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
168538	chr3	146095851	146096030	+	0	NA	intron (NM_182943, intron 7 of 19)	SVA_E|Retroposon|SVA	-26755	NR_146297	109729161		NR_146297	ENSG00000240032	LNCSRLR	lncRNA-SRLR	lncRNA sorafenib resistance in renal cell carcinoma associated	ncRNA
193720	chr6	31196851	31197400	+	0	NA	promoter-TSS (NR_026791)	promoter-TSS (NR_026791)	-635	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
63528	chr13	114339821	114340630	+	0	NA	Intergenic	Intergenic	-6277	NR_126391	104355150		NR_126391		LINC01054	-	long intergenic non-protein coding RNA 1054	ncRNA
78990	chr15	101744051	101744580	+	0	NA	intron (NR_168283, intron 2 of 2)	intron (NR_168283, intron 2 of 2)	1423	NR_168283	100128108		NM_001321551	ENSG00000290760	UBE2Q2P13	-	UBE2Q2 pseudogene 13	pseudo
151059	chr21	44708771	44708930	+	0	NA	intron (NM_001272037, intron 1 of 12)	intron (NM_001272037, intron 1 of 12)	2722	NM_144991	54084		NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|ECTD14|STHAG10|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding
89456	chr16	89018351	89018650	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-41293	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
69887	chr14	99380721	99380980	+	0	NA	Intergenic	Intergenic	100009	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
89305	chr16	88716201	88716900	+	0	NA	promoter-TSS (NR_039873)	promoter-TSS (NR_039873)	-213	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
68730	chr14	90830001	90830630	+	0	NA	Intergenic	Intergenic	-13885	NM_001010854	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
7137	chr1	32204971	32206680	+	0	NA	TTS (NM_024296)	TTS (NM_024296)	154	NM_018134	55721		NM_018134	ENSG00000160051	IQCC	-	IQ motif containing C	protein-coding
143334	chr20	25718821	25719800	+	0	NA	Intergenic	L1PA3|LINE|L1	-22457	NM_015655	26152		NM_015655	ENSG00000130684	ZNF337	-	zinc finger protein 337	protein-coding
143001	chr20	20368301	20368830	+	0	NA	exon (NM_002196, exon 1 of 1)	exon (NM_002196, exon 1 of 1)	461	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
100968	chr17	64515271	64515430	+	0	NA	intron (NM_001316990, intron 4 of 18)	intron (NM_001316990, intron 4 of 18)	8373	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
11788	chr1	92495621	92496230	+	0	NA	Intergenic	Intergenic	-9000	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
10086	chr1	58857901	58858900	+	0	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	73249	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
117988	chr19	33520421	33520930	+	0	NA	intron (NM_000285, intron 1 of 14)	intron (NM_000285, intron 1 of 14)	1116	NM_001166056	5184		NM_000285	ENSG00000124299	PEPD	PROLIDASE	peptidase D	protein-coding
227899	chr9	94011001	94011400	+	0	NA	Intergenic	Intergenic	-19613	NM_177995	138639		NM_152422	ENSG00000158079	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
76151	chr15	72655401	72655600	+	0	NA	intron (NM_018652, intron 1 of 17)	intron (NM_018652, intron 1 of 17)	803	NM_018652	55889		NM_018652	ENSG00000215186	GOLGA6B	GOLGA|GOLGA6D	golgin A6 family member B	protein-coding
123792	chr19	55147871	55148230	+	0	NA	5' UTR (NM_001291774, exon 2 of 14)	5' UTR (NM_001291774, exon 2 of 14)	1156	NM_001291774	7138		NM_003283	ENSG00000105048	TNNT1	ANM|NEM5|STNT|TNT|TNTS	troponin T1, slow skeletal type	protein-coding
42115	chr11	67608151	67608250	+	0	NA	intron (NM_007103, intron 1 of 9)	AluSz|SINE|Alu	1264	NM_001166102	4723		NM_007103	ENSG00000167792	NDUFV1	CI-51K|CI51KD|MC1DN4|UQOR1	NADH:ubiquinone oxidoreductase core subunit V1	protein-coding
151353	chr21	45738571	45739750	+	0	NA	intron (NM_001382287, intron 2 of 15)	intron (NM_001382287, intron 2 of 15)	-8854	NM_001348243	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
112776	chr19	7470851	7471250	+	0	NA	3' UTR (NM_001130955, exon 20 of 20)	3' UTR (NM_001130955, exon 20 of 20)	17985	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
185347	chr5	126987801	126989180	+	0	NA	intron (NM_178450, intron 1 of 4)	HAL1ME|LINE|L1	42068	NM_178450	115123		NM_178450	ENSG00000173926	MARCHF3	MARCH-III|MARCH3|RNF173	membrane associated ring-CH-type finger 3	protein-coding
217524	chr8	29251271	29251700	+	0	NA	intron (NM_015254, intron 1 of 39)	L1MB3|LINE|L1	11585	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
79876	chr16	1529901	1530100	+	0	NA	intron (NM_001256541, intron 1 of 3)	intron (NM_001256541, intron 1 of 3)	1322	NM_001256541	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
60779	chr13	45281071	45281300	+	0	NA	intron (NM_004128, intron 7 of 7)	intron (NM_004128, intron 7 of 7)	55262	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
177413	chr4	112301471	112301630	+	0	NA	intron (NM_001253884, intron 1 of 14)	intron (NM_001253884, intron 1 of 14)	4181	NM_001102406	80216		NM_025144	ENSG00000073331	ALPK1	8430410J10Rik|LAK|ROSAH	alpha kinase 1	protein-coding
49577	chr12	26970851	26971430	+	0	NA	TTS (NM_016551)	TTS (NM_016551)	32670	NM_015633	26127		NM_015633	ENSG00000111790	FGFR1OP2	HSPC123-like|WIT3.0	FGFR1 oncogene partner 2	protein-coding
61933	chr13	78601371	78602080	+	0	NA	exon (NM_006237, exon 2 of 2)	exon (NM_006237, exon 2 of 2)	1827	NM_006237	5457		NM_006237	ENSG00000152192	POU4F1	ATITHS|BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
23436	chr1	228410971	228411530	+	0	NA	intron (NM_001134855, intron 3 of 5)	intron (NM_001134855, intron 3 of 5)	-4415	NM_145214	81559		NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
153000	chr22	23180281	23181600	+	0	NA	5' UTR (NM_004327, exon 1 of 23)	5' UTR (NM_004327, exon 1 of 23)	431	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
233138	chr9	137156551	137157780	+	0	NA	intron (NM_007327, intron 6 of 19)	CpG-29197	12105	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
179684	chr4	190071101	190071300	+	0	NA	Intergenic	CpG	5971	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
52153	chr12	54275221	54275680	+	0	NA	intron (NR_157844, intron 1 of 1)	AluSc8|SINE|Alu	4672	NM_012117	23468		NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A|HP1alpha	chromobox 5	protein-coding
62905	chr13	110912001	110912400	+	0	NA	intron (NR_104586, intron 1 of 4)	intron (NR_104586, intron 1 of 4)	2869	NM_017664	55608		NM_017664	ENSG00000088448	ANKRD10	-	ankyrin repeat domain 10	protein-coding
76858	chr15	77905021	77905280	+	0	NA	Intergenic	Intergenic	21696	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
48354	chr12	9404071	9405080	+	0	NA	intron (NR_144634, intron 2 of 8)	intron (NR_144634, intron 2 of 8)	2839	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
161920	chr3	46046071	46046880	+	0	NA	intron (NM_001381860, intron 3 of 3)	LTR3A|LTR|ERVK	-18992	NM_001024644	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
185223	chr5	122137651	122137950	+	0	NA	intron (NM_207317, intron 1 of 1)	L2b|LINE|L2	8254	NM_207317	133923		NM_207317	ENSG00000164185	ZNF474	-	zinc finger protein 474	protein-coding
204171	chr7	2421201	2421400	+	0	NA	intron (NM_018641, intron 1 of 1)	AluJo|SINE|Alu	17689	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
10273	chr1	64744351	64746800	+	0	NA	intron (NM_001366165, intron 1 of 11)	intron (NM_001366165, intron 1 of 11)	500	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
83485	chr16	27407101	27407480	+	0	NA	intron (NM_181079, intron 2 of 9)	L2c|LINE|L2	5116	NM_181078	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
154548	chr22	36179951	36181130	+	0	NA	Intergenic	LTR57-int|LTR|ERVL	-14363	NM_145641	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
203407	chr7	151251	151700	+	0	NA	intron (NR_108065, intron 1 of 1)	AluSg|SINE|Alu	1757	NR_108064	100507642		NR_108064	ENSG00000240859	LINC03014	-	long intergenic non-protein coding RNA 3014	ncRNA
176669	chr4	100162121	100162380	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-27783	NR_125924	101929353		NR_125924	ENSG00000249710	DDIT4L-AS1	-	DDIT4L antisense RNA 1	ncRNA
133409	chr2	118847751	118848250	+	0	NA	promoter-TSS (NM_001426)	promoter-TSS (NM_001426)	-352	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
105935	chr18	3592471	3592630	+	0	NA	intron (NM_001242765, intron 4 of 8)	intron (NM_001242765, intron 4 of 8)	-1564	NR_024101	649446		NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
143280	chr20	25252801	25253000	+	0	NA	intron (NM_002862, intron 1 of 19)	MER21C|LTR|ERVL	4815	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
169314	chr3	158800301	158800850	+	0	NA	Intergenic	L2|LINE|L2	-1479	NM_022736	64747		NM_022736	ENSG00000118855	MFSD1	Minerva|SMAP4	major facilitator superfamily domain containing 1	protein-coding
14986	chr1	148057551	148057650	+	0	NA	intron (NR_146087, intron 1 of 7)	MER65A|LTR|ERV1	8298	NR_146087	728920		NR_146087		PDE4DIPP1	PDE4DIP1	PDE4DIP pseudogene 1	pseudo
199237	chr6	111826471	111827180	+	0	NA	intron (NM_002037, intron 2 of 13)	L2a|LINE|L2	46246	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
55734	chr12	108323021	108323280	+	0	NA	intron (NM_001142344, intron 1 of 2)	Charlie18a|DNA|hAT-Charlie	-2488	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
149968	chr21	36496851	36497300	+	0	NA	intron (NM_001146077, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	-16953	NM_001146079	23562		NM_012130	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
129130	chr2	65299201	65299730	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	67313	NM_001128210	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
93254	chr17	17959601	17960430	+	0	NA	intron (NM_001082968, intron 1 of 14)	intron (NM_001082968, intron 1 of 14)	12385	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
198927	chr6	110357651	110358350	+	0	NA	exon (NM_001123364, exon 1 of 5)	exon (NM_001123364, exon 1 of 5)	272	NM_001354594	728464		NM_001123364	ENSG00000053328	METTL24	C6orf186	methyltransferase like 24	protein-coding
225442	chr9	35100651	35100750	+	0	NA	exon (NM_001287031, exon 8 of 9)	exon (NM_001287031, exon 8 of 9)	2431	NM_013442	30968		NM_013442	ENSG00000165283	STOML2	HSPC108|SLP-2	stomatin like 2	protein-coding
229636	chr9	124202071	124203030	+	0	NA	Intergenic	Intergenic	-55056	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
101276	chr17	66373971	66375150	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	42294	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
93432	chr17	18562901	18563100	+	0	NA	intron (NR_036647, intron 12 of 16)	L1PA16|LINE|L1	-36154	NM_024974	80039		NM_024974	ENSG00000273018	FAM106A	-	family with sequence similarity 106 member A	ncRNA
176580	chr4	98688471	98688700	+	0	NA	Intergenic	L2c|LINE|L2	29683	NR_148380	105377342		NR_148380		TSPAN5-DT	-	TSPAN5 divergent transcript	ncRNA
179783	chr5	335021	335280	+	0	NA	intron (NM_001377239, intron 1 of 10)	L1M2|LINE|L1	12540	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
220522	chr8	100681971	100682330	+	0	NA	Intergenic	MIR|SINE|MIR	20874	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
152328	chr22	20396651	20396950	+	0	NA	intron (NM_001256524, intron 3 of 5)	intron (NM_001256524, intron 3 of 5)	2649	NR_046282	7625		NM_003426	ENSG00000185252	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
153281	chr22	24161321	24161580	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-20037	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
46825	chr11	130894401	130895280	+	0	NA	3' UTR (NM_001347920, exon 9 of 9)	3' UTR (NM_001347920, exon 9 of 9)	21639	NM_001347919	399979		NM_014758	ENSG00000120451	SNX19	CHET8	sorting nexin 19	protein-coding
11123	chr1	86441551	86441880	+	0	NA	intron (NM_006536, intron 9 of 13)	intron (NM_006536, intron 9 of 13)	17544	NM_006536	9635		NM_006536	ENSG00000137975	CLCA2	CACC|CACC3|CLCRG2|CaCC-3	chloride channel accessory 2	protein-coding
138841	chr2	216502551	216503450	+	0	NA	3' UTR (NM_000998, exon 4 of 4)	3' UTR (NM_000998, exon 4 of 4)	4156	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
165493	chr3	99877251	99877350	+	0	NA	intron (NM_182909, intron 4 of 5)	intron (NM_182909, intron 4 of 5)	-1097	NM_001282793	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
182682	chr5	67510201	67510480	+	0	NA	Intergenic	L1MC2|LINE|L1	136449	NR_147169	105379006		NR_147169	ENSG00000249736	LINC02242	-	long intergenic non-protein coding RNA 2242	ncRNA
191342	chr6	7127771	7127930	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	19889	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
164095	chr3	56592171	56592530	+	0	NA	intron (NR_148371, intron 9 of 19)	intron (NR_148371, intron 9 of 19)	35175	NM_001141947	285331		NM_001012506	ENSG00000180376	CCDC66	-	coiled-coil domain containing 66	protein-coding
145818	chr20	45487121	45487530	+	0	NA	Intergenic	Intergenic	17572	NM_006103	10406		NM_006103	ENSG00000101443	WFDC2	EDDM4|HE4|WAP5|dJ461P17.6	WAP four-disulfide core domain 2	protein-coding
12188	chr1	100373071	100373700	+	0	NA	intron (NM_001319210, intron 2 of 16)	Tigger1|DNA|TcMar-Tigger	20879	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
27256	chr10	29688451	29688550	+	0	NA	intron (NM_001323599, intron 1 of 38)	intron (NM_001323599, intron 1 of 38)	47301	NM_003174	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
5484	chr1	25675771	25676800	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	-19870	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
211899	chr7	112202621	112203330	+	0	NA	intron (NM_014705, intron 1 of 51)	intron (NM_014705, intron 1 of 51)	3424	NM_001363540	9732		NM_014705	ENSG00000128512	DOCK4	-	dedicator of cytokinesis 4	protein-coding
121988	chr19	48508351	48508650	+	0	NA	intron (NM_001080434, intron 6 of 15)	intron (NM_001080434, intron 6 of 15)	4689	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
14591	chr1	145216951	145217700	+	0	NA	TTS (NR_148945)	TTS (NR_148945)	-1273	NR_111955	103091866		NR_111954		LINC01145	-	long intergenic non-protein coding RNA 1145	ncRNA
166936	chr3	125139971	125140130	+	0	NA	intron (NM_024628, intron 5 of 13)	intron (NM_024628, intron 5 of 13)	11502	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
35294	chr11	980171	980550	+	0	NA	intron (NR_144509, intron 5 of 20)	CpG	54490	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
26453	chr10	17465451	17465550	+	0	NA	Intergenic	Intergenic	-10905	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
41715	chr11	66652521	66652780	+	0	NA	intron (NM_001198844, intron 2 of 2)	intron (NM_001198844, intron 2 of 2)	13947	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
58950	chr13	19779301	19780100	+	0	NA	intron (NM_001354909, intron 1 of 8)	SVA_F|Retroposon|SVA	3245	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
1981	chr1	6609701	6609900	+	0	NA	Intergenic	Intergenic	-3931	NM_153812	148479		NM_153812	ENSG00000116273	PHF13	PHF5|SPOC1	PHD finger protein 13	protein-coding
230976	chr9	129466951	129467450	+	0	NA	Intergenic	Intergenic	-21460	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
8633	chr1	41698051	41698350	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-213517	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
41674	chr11	66613551	66613850	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2882	NM_001198845	100526737		NM_001198845	ENSG00000248643	RBM14-RBM4	COAZ|PSP2|RBM14|SIP	RBM14-RBM4 readthrough	protein-coding
123596	chr19	54475621	54476330	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-2679	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
138396	chr2	204480921	204481000	+	0	NA	Intergenic	L2a|LINE|L2	-64515	NM_205863	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
7865	chr1	36380451	36381350	+	0	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	5024	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
51753	chr12	53269771	53269930	+	0	NA	exon (NM_012291, exon 3 of 31)	exon (NM_012291, exon 3 of 31)	1551	NM_012291	9700		NM_012291	ENSG00000135476	ESPL1	ESP1|SEPA	extra spindle pole bodies like 1, separase	protein-coding
103247	chr17	77528301	77529150	+	0	NA	intron (NR_148967, intron 1 of 2)	CpG	1724	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
112572	chr19	6630751	6631080	+	0	NA	Intergenic	Intergenic	39243	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
233249	chr9	137270221	137270480	+	0	NA	intron (NM_015456, intron 10 of 12)	AluSx|SINE|Alu	-7376	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
187263	chr5	141508621	141508950	+	0	NA	intron (NM_018912, intron 3 of 3)	intron (NM_018912, intron 3 of 3)	19544	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
59371	chr13	24695071	24695230	+	0	NA	intron (NM_001185085, intron 11 of 22)	MIRc|SINE|MIR	14739	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
228070	chr9	96219151	96219300	+	0	NA	Intergenic	CpG	-27238	NR_146524	105376162		NR_146524	ENSG00000232283	HSD17B3-AS1	-	HSD17B3 antisense RNA 1	ncRNA
141803	chr20	301171	301630	+	0	NA	Intergenic	Intergenic	3830	NM_033089	85364		NM_033089	ENSG00000247315	ZCCHC3	C20orf99	zinc finger CCHC-type containing 3	protein-coding
124058	chr19	55593651	55593950	+	0	NA	intron (NM_032836, intron 2 of 2)	intron (NM_032836, intron 2 of 2)	5717	NM_032836	84922		NM_032836	ENSG00000179943	FIZ1	ZNF798	FLT3 interacting zinc finger 1	protein-coding
128918	chr2	64325501	64326650	+	0	NA	Intergenic	Intergenic	-14684	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
216311	chr8	12693201	12693400	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-25827	NR_049875	100847066		NR_049875	ENSG00000266318	MIR5692A1	-	microRNA 5692a-1	ncRNA
157033	chr22	42562201	42562730	+	0	NA	intron (NR_104300, intron 8 of 10)	MLT1C|LTR|ERVL-MaLR	8509	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
12881	chr1	110215601	110215800	+	0	NA	intron (NM_001377331, intron 1 of 2)	MIRc|SINE|MIR	5386	NM_001377331	3749		NM_004978	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	potassium voltage-gated channel subfamily C member 4	protein-coding
125202	chr2	10277171	10277330	+	0	NA	Intergenic	Intergenic	-25654	NM_002149	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
11316	chr1	89355171	89355330	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-8627	NM_001320257	163351		NM_198460	ENSG00000183347	GBP6	-	guanylate binding protein family member 6	protein-coding
185431	chr5	131164051	131165950	+	0	NA	intron (NR_024610, intron 1 of 3)	CpG	256	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
114338	chr19	12157551	12157650	+	0	NA	promoter-TSS (NR_037801)	promoter-TSS (NR_037801)	-866	NR_037801	90589		NM_145233	ENSG00000257591	ZNF625	-	zinc finger protein 625	protein-coding
221524	chr8	124655221	124656430	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	72648	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
59902	chr13	30772301	30772930	+	0	NA	Intergenic	Intergenic	-30591	NR_047012	100874158		NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
103323	chr17	77955421	77955880	+	0	NA	Intergenic	L1PB1|LINE|L1	-48587	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
190344	chr5	179675751	179676050	+	0	NA	Intergenic	Intergenic	5134	NM_001164444	646019		NM_001164444	ENSG00000204659	CBY3	-	chibby family member 3	protein-coding
18045	chr1	160618501	160619580	+	0	NA	intron (NR_104400, intron 3 of 4)	intron (NR_104400, intron 3 of 4)	28004	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
215564	chr7	158812651	158813500	+	0	NA	intron (NM_020728, intron 1 of 21)	L1MB5|LINE|L1	16434	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
203044	chr6	165662101	165662330	+	0	NA	promoter-TSS (NM_001130690)	promoter-TSS (NM_001130690)	65	NM_001130690	10846		NM_006661	ENSG00000112541	PDE10A	ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19	phosphodiesterase 10A	protein-coding
37351	chr11	14907301	14908070	+	0	NA	Intergenic	Intergenic	-15454	NM_024514	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
198174	chr6	95758651	95758950	+	0	NA	Intergenic	L1PA2|LINE|L1	181265	NM_024641	79694		NM_024641	ENSG00000172469	MANEA	ENDO|hEndo	mannosidase endo-alpha	protein-coding
42476	chr11	69841501	69841700	+	0	NA	Intergenic	(CAA)n|Simple_repeat|Simple_repeat	-22184	NM_005247	2248		NM_005247	ENSG00000186895	FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
64496	chr14	24328871	24329030	+	0	NA	intron (NM_001198592, intron 11 of 25).2	intron (NM_001198592, intron 11 of 25).2	6121	NM_139247	196883		NM_139247	ENSG00000129467	ADCY4	AC4	adenylate cyclase 4	protein-coding
97252	chr17	42997701	42999580	+	0	NA	5' UTR (NM_001349922, exon 1 of 4)	5' UTR (NM_001349922, exon 1 of 4)	221	NM_001349922	6155		NM_000988	ENSG00000131469	RPL27	DBA16|L27|eL27	ribosomal protein L27	protein-coding
14262	chr1	143265471	143265950	+	0	NA	Intergenic	Intergenic	156882	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
47480	chr12	3925571	3925930	+	0	NA	Intergenic	Intergenic	-52302	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
28874	chr10	62728071	62728230	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-76570	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
65954	chr14	55864901	55865100	+	0	NA	Intergenic	L1PREC2|LINE|L1	-68326	NR_026796	645687		NR_026796	ENSG00000258791	LINC00520	C14orf34|LASSIE|LEENE|LncRNA00520	long intergenic non-protein coding RNA 520	ncRNA
73200	chr15	41543751	41544980	+	0	NA	promoter-TSS (NM_015540)	promoter-TSS (NM_015540)	-108	NM_015540	26015		NM_015540	ENSG00000103932	RPAP1	-	RNA polymerase II associated protein 1	protein-coding
104695	chr17	81531851	81531950	+	0	NA	intron (NM_012418, intron 1 of 4)	intron (NM_012418, intron 1 of 4)	3523	NM_012418	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
34621	chr10	133284971	133285330	+	0	NA	exon (NM_001256617, exon 14 of 19)	exon (NM_001256617, exon 14 of 19)	-8282	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
178821	chr4	153535651	153536700	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	69815	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
231268	chr9	130009951	130011000	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluSz|SINE|Alu	32714	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
12723	chr1	109531471	109531630	+	0	NA	Intergenic	Intergenic	-8322	NM_031936	83873		NM_031936	ENSG00000156097	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
181100	chr5	36928821	36929450	+	0	NA	intron (NM_133433, intron 1 of 46)	L1ME1|LINE|L1	52366	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
68627	chr14	89706021	89706450	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-87070	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
13147	chr1	111689071	111689230	+	0	NA	intron (NM_001370217, intron 1 of 7)	L1ME1|LINE|L1	24356	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
46070	chr11	122749901	122750350	+	0	NA	intron (NM_032873, intron 1 of 13)	MIRc|SINE|MIR	-88375	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
142715	chr20	8661401	8661600	+	0	NA	intron (NM_015192, intron 9 of 31)	intron (NM_015192, intron 9 of 31)	-169685	NR_004386	26767		NR_004386	ENSG00000201348	RNU105B	105B|E1-2	RNA, U105B small nucleolar	snoRNA
220726	chr8	102096401	102096800	+	0	NA	intron (NM_001040625, intron 1 of 6)	MER51A|LTR|ERV1	27734	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
112465	chr19	6388451	6389230	+	0	NA	TTS (NR_106945)	TTS (NR_106945)	863	NR_106945	102465533		NR_106945	ENSG00000274390	MIR6885	hsa-mir-6885	microRNA 6885	ncRNA
62229	chr13	98522471	98522830	+	0	NA	promoter-TSS (NM_003576)	promoter-TSS (NM_003576)	-525	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
97434	chr17	43541801	43542000	+	0	NA	intron (NM_001322219, intron 23 of 23)	intron (NM_001322219, intron 23 of 23)	3999	NM_001986	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
234941	chrX	38768071	38768300	+	0	NA	Intergenic	Intergenic	-33247	NM_001098791	58526		NM_021242	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
95163	chr17	35140301	35140700	+	0	NA	intron (NM_001014445, intron 1 of 11)	AluSx1|SINE|Alu	1751	NM_001014445	54475		NM_018096	ENSG00000073536	NLE1	NLE|Rsa4	notchless homolog 1	protein-coding
160040	chr3	18435621	18435880	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	2986	NM_001131010	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
133224	chr2	113184121	113185230	+	0	NA	intron (NM_012455, intron 2 of 16)	intron (NM_012455, intron 2 of 16)	10704	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
144442	chr20	35492071	35492330	+	0	NA	intron (NM_007186, intron 22 of 34)	L1MB8|LINE|L1	32217	NM_001318219	11190		NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1|CRDHL2	centrosomal protein 250	protein-coding
213846	chr7	141926121	141926450	+	0	NA	Intergenic	L1HS|LINE|L1	9886	NM_001001656	130075		NM_001001656	ENSG00000258083	OR9A4	-	olfactory receptor family 9 subfamily A member 4	protein-coding
34570	chr10	133229571	133231100	+	0	NA	exon (NM_003577, exon 1 of 2)	exon (NM_003577, exon 1 of 2)	118	NM_003577	8433		NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
215105	chr7	155296101	155298300	+	0	NA	promoter-TSS (NM_001346591)	promoter-TSS (NM_001346591)	-572	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
109687	chr19	1040701	1041600	+	0	NA	intron (NM_019112, intron 1 of 46)	intron (NM_019112, intron 1 of 46)	1043	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
81220	chr16	4515451	4516780	+	0	NA	intron (NM_001199055, intron 1 of 5)	L1MB7|LINE|L1	20257	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
152686	chr22	21622301	21622900	+	0	NA	non-coding (NR_046082, exon 4 of 4)	non-coding (NR_046082, exon 4 of 4)	7422	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
121549	chr19	47251021	47251430	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-5300	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
162873	chr3	49369071	49369230	+	0	NA	intron (NM_001313941, intron 3 of 5)	AluYj4|SINE|Alu	-10550	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
82557	chr16	18564921	18565180	+	0	NA	Intergenic	AluJr|SINE|Alu	-2938	NM_001004060	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
198402	chr6	105835551	105835650	+	0	NA	Intergenic	Intergenic	-250736	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
76912	chr15	78037871	78038630	+	0	NA	intron (NM_144572, intron 3 of 12)	L2b|LINE|L2	39402	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
49731	chr12	31362571	31363330	+	0	NA	TTS (NR_146469)	TTS (NR_146469)	6351	NR_146469	101929027		NR_146469	ENSG00000256232	LINC02387	-	long intergenic non-protein coding RNA 2387	ncRNA
236763	chrX	78946221	78946550	+	0	NA	intron (NM_001324225, intron 2 of 3)	intron (NM_001324225, intron 2 of 3)	994	NM_001324225	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
99267	chr17	49741031	49741630	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	22801	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
231296	chr9	130042601	130043930	+	0	NA	promoter-TSS (NM_015033)	promoter-TSS (NM_015033)	-76	NM_001363755	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
110469	chr19	2014771	2016750	+	0	NA	promoter-TSS (NM_017797)	promoter-TSS (NM_017797)	-46	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
203922	chr7	1523171	1523550	+	0	NA	Intergenic	Intergenic	-7342	NM_002360	7975		NM_002360	ENSG00000198517	MAFK	NFE2U|P18	MAF bZIP transcription factor K	protein-coding
107489	chr18	47660671	47660880	+	0	NA	Intergenic	L1HS|LINE|L1	269884	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
116281	chr19	17727501	17727900	+	0	NA	exon (NM_018174, exon 5 of 7)	exon (NM_018174, exon 5 of 7)	7544	NM_001308363	55201		NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule associated protein 1S	protein-coding
68974	chr14	91453221	91453480	+	0	NA	Intergenic	Intergenic	-35530	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
140719	chr2	234424651	234424830	+	0	NA	Intergenic	Intergenic	29855	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
237487	chrX	119873271	119873680	+	0	NA	intron (NM_004541, intron 2 of 2)	intron (NM_004541, intron 2 of 2)	1643	NM_004541	4694		NM_004541	ENSG00000125356	NDUFA1	CI-MWFE|MC1DN12|MWFE|ZNF183	NADH:ubiquinone oxidoreductase subunit A1	protein-coding
37896	chr11	34059271	34059430	+	0	NA	intron (NM_203364, intron 2 of 17)	AluSx3|SINE|Alu	7619	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
183159	chr5	75096001	75096400	+	0	NA	intron (NM_001164443, intron 21 of 24)	L1P3|LINE|L1	-43642	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
25854	chr10	11237421	11238330	+	0	NA	intron (NM_001326330, intron 3 of 12)	MADE1|DNA|TcMar-Mariner	72845	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
115737	chr19	16264951	16265050	+	0	NA	Intergenic	L1MB5|LINE|L1	-59826	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
56898	chr12	120357521	120357780	+	0	NA	intron (NM_002442, intron 8 of 14)	AluSx|SINE|Alu	11514	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
72193	chr15	30100401	30100800	+	0	NA	Intergenic	Intergenic	-2947	NR_026858	89838		NR_026858	ENSG00000291023	ULK4P1	D-X|FAM7A1	ULK4 pseudogene 1	pseudo
41927	chr11	67293101	67293930	+	0	NA	intron (NM_207354, intron 6 of 14)	AluJb|SINE|Alu	4212	NM_001347901	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
140687	chr2	234254521	234254980	+	0	NA	Intergenic	AluJo|SINE|Alu	199845	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
159975	chr3	17779651	17779750	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	36756	NR_135536	105376975		NR_135536	ENSG00000286352	LOC105376975	-	uncharacterized LOC105376975	ncRNA
80170	chr16	2113971	2114330	+	0	NA	intron (NM_001009944, intron 11 of 45)	intron (NM_001009944, intron 11 of 45)	-7397	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
7567	chr1	35165921	35166180	+	0	NA	Intergenic	AluY|SINE|Alu	27095	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
138368	chr2	203950201	203950480	+	0	NA	intron (NM_012092, intron 1 of 4)	MSTC|LTR|ERVL-MaLR	13577	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123568	chr19	54447351	54447600	+	0	NA	intron (NR_126418, intron 2 of 2)	L1MD3|LINE|L1	1563	NR_126418	104355426		NR_126418	ENSG00000226696	LENG8-AS1	-	LENG8 antisense RNA 1	ncRNA
126712	chr2	30171601	30172100	+	0	NA	Intergenic	AluY|SINE|Alu	-15584	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
227877	chr9	93681901	93682450	+	0	NA	Intergenic	Intergenic	87334	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
88139	chr16	81625371	81625530	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	14102	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
55970	chr12	110082001	110082400	+	0	NA	Intergenic	Intergenic	-8561	NR_148515	400073		NM_207435	ENSG00000174456	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
233027	chr9	137027501	137029820	+	0	NA	promoter-TSS (NM_001606)	promoter-TSS (NM_001606)	262	NM_212533	20		NM_001606	ENSG00000107331	ABCA2	ABC2|IDPOGSA	ATP binding cassette subfamily A member 2	protein-coding
103029	chr17	77085801	77086980	+	0	NA	Intergenic	Intergenic	-2253	NR_027058	654434		NR_027058	ENSG00000234912	SNHG20	C17orf86|LINC00338|NCRNA00338|SCARNA16HG	small nucleolar RNA host gene 20	ncRNA
206501	chr7	33261601	33261800	+	0	NA	intron (NR_145411, intron 6 of 23)	intron (NR_145411, intron 6 of 23)	132136	NM_198428	27241		NM_014451	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
94423	chr17	29130451	29130750	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	9789	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
116000	chr19	17110901	17111100	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	18765	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
56191	chr12	111441451	111441850	+	0	NA	intron (NM_001291424, intron 1 of 6)	intron (NM_001291424, intron 1 of 6)	6788	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
157339	chr22	44665201	44665630	+	0	NA	Intergenic	Intergenic	-3132	NM_001017529	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
109719	chr19	1076351	1078150	+	0	NA	5' UTR (NM_001282334, exon 1 of 13)	5' UTR (NM_001282334, exon 1 of 13)	616	NM_001282334	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
236664	chrX	76218021	76218280	+	0	NA	Intergenic	Intergenic	45088	NM_016500	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
71438	chr14	105680141	105681300	+	0	NA	Intergenic	Intergenic	-7913	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
94375	chr17	28927821	28928750	+	0	NA	intron (NM_020889, intron 2 of 8)	MLT1H1|LTR|ERVL-MaLR	2010	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
134191	chr2	134348101	134348300	+	0	NA	intron (NM_001371457, intron 9 of 16)	intron (NM_001371457, intron 9 of 16)	94128	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
98011	chr17	45321051	45321730	+	0	NA	Intergenic	Intergenic	-4370	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
180335	chr5	6632671	6634280	+	0	NA	promoter-TSS (NM_001193455)	promoter-TSS (NM_001193455)	35	NM_001324322	6715		NM_001047	ENSG00000145545	SRD5A1	S5AR 1	steroid 5 alpha-reductase 1	protein-coding
46463	chr11	128286271	128286630	+	0	NA	Intergenic	Intergenic	77684	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
227371	chr9	89492651	89492750	+	0	NA	intron (NM_001371194, intron 1 of 15)	L2a|LINE|L2	2956	NM_001371198	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
126441	chr2	28004001	28004200	+	0	NA	intron (NM_199193, intron 5 of 13)	intron (NM_199193, intron 5 of 13)	7733	NR_036230	100422965		NR_036230	ENSG00000265321	MIR4263	-	microRNA 4263	ncRNA
47266	chr12	1533301	1534630	+	0	NA	Intergenic	Intergenic	-1773	NR_160736	107984507		NR_160736		LOC107984507	-	uncharacterized LOC107984507	ncRNA
101138	chr17	65041601	65041800	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	14074	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
88337	chr16	84520671	84520930	+	0	NA	Intergenic	Intergenic	-16141	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
152263	chr22	20250151	20250450	+	0	NA	intron (NM_023004, intron 1 of 1)	MER58A|DNA|hAT-Charlie	-1089	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
43984	chr11	94134071	94134230	+	0	NA	intron (NM_015368, intron 1 of 4)	intron (NM_015368, intron 1 of 4)	5309	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
200197	chr6	131135271	131136500	+	0	NA	intron (NR_164834, intron 1 of 9)	CpG	418	NR_164833	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
169251	chr3	157156701	157157100	+	0	NA	intron (NM_001308185, intron 3 of 10)	intron (NM_001308185, intron 3 of 10)	3247	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
130199	chr2	84515951	84517200	+	0	NA	promoter-TSS (NM_001370)	promoter-TSS (NM_001370)	77	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
182033	chr5	55650351	55650880	+	0	NA	intron (NM_001349385, intron 9 of 14)	intron (NM_001349385, intron 9 of 14)	42438	NM_001258286	153129		NM_173514	ENSG00000177058	SLC38A9	SNAT9|URLC11	solute carrier family 38 member 9	protein-coding
69688	chr14	98166021	98166280	+	0	NA	Intergenic	Intergenic	-188026	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
76657	chr15	75650351	75650850	+	0	NA	intron (NM_153271, intron 1 of 1)	intron (NM_153271, intron 1 of 1)	1593	NM_001318146	257364		NM_153271	ENSG00000173548	SNX33	SH3PX3|SH3PXD3C|SNX30	sorting nexin 33	protein-coding
149947	chr21	36327871	36328100	+	0	NA	intron (NM_001320445, intron 1 of 15)	AluSz|SINE|Alu	7788	NM_015358	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
38794	chr11	47259371	47259830	+	0	NA	intron (NM_005693, intron 2 of 9)	intron (NM_005693, intron 2 of 9)	1604	NM_005693	10062		NM_005693	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	nuclear receptor subfamily 1 group H member 3	protein-coding
64285	chr14	23477321	23477580	+	0	NA	intron (NM_001042635, intron 9 of 10)	intron (NM_001042635, intron 9 of 10)	7747	NM_001042635	25983		NM_015514	ENSG00000129460	NGDN	C14orf120|CANu1|LCP5|NGD|lpd-2	neuroguidin	protein-coding
154567	chr22	36257121	36257850	+	0	NA	intron (NM_145343, intron 5 of 6)	intron (NM_145343, intron 5 of 6)	4352	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
148333	chr20	63783651	63783830	+	0	NA	intron (NM_025224, intron 2 of 4)	intron (NM_025224, intron 2 of 4)	21763	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
93930	chr17	21302051	21302350	+	0	NA	exon (NM_002756, exon 6 of 12)	exon (NM_002756, exon 6 of 12)	14164	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
130042	chr2	74423471	74424900	+	0	NA	intron (NM_032118, intron 6 of 9)	intron (NM_032118, intron 6 of 9)	2455	NM_032118	84058		NM_032118	ENSG00000005448	WDR54	-	WD repeat domain 54	protein-coding
79366	chr16	634101	634300	+	0	NA	TTS (NM_001288710)	TTS (NM_001288710)	2105	NR_109978	84326		NM_032366	ENSG00000130731	METTL26	C16orf13|JFP2	methyltransferase like 26	protein-coding
106216	chr18	11817771	11817930	+	0	NA	intron (NM_182978, intron 4 of 11)	AluSx|SINE|Alu	-33563	NM_020412	57132		NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
12206	chr1	100391401	100392280	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	39334	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
67146	chr14	68711701	68712200	+	0	NA	Intergenic	Intergenic	81117	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
144711	chr20	36506221	36506580	+	0	NA	intron (NM_001365621, intron 10 of 12)	intron (NM_001365621, intron 10 of 12)	-35119	NM_006097	10398		NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MMIHS4|MRLC1|MYRL2	myosin light chain 9	protein-coding
233276	chr9	137304301	137304930	+	0	NA	Intergenic	Intergenic	-2344	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
185368	chr5	127569321	127569880	+	0	NA	Intergenic	LTR12C|LTR|ERV1	51960	NM_001286808	133619		NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
114461	chr19	12725721	12726530	+	0	NA	Intergenic	MIR|SINE|MIR	-2193	NM_001382241	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
7186	chr1	32268101	32268350	+	0	NA	intron (NM_005356, intron 1 of 12)	intron (NM_005356, intron 1 of 12)	-5886	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
171024	chr3	195109551	195109850	+	0	NA	intron (NM_001308069, intron 3 of 3)	(GT)n|Simple_repeat|Simple_repeat	15112	NR_104188	100874528		NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
6662	chr1	29122271	29122730	+	0	NA	promoter-TSS (NM_001171868)	promoter-TSS (NM_001171868)	1	NM_001171868	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
154710	chr22	36419051	36419780	+	0	NA	Intergenic	Intergenic	-31448	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
114790	chr19	13778021	13779030	+	0	NA	3' UTR (NM_014047, exon 3 of 3)	3' UTR (NM_014047, exon 3 of 3)	4069	NM_014047	28974		NM_014047	ENSG00000104979	C19orf53	HSPC023|L10K|LYDG10	chromosome 19 open reading frame 53	protein-coding
160454	chr3	30112821	30113100	+	0	NA	Intergenic	MIRb|SINE|MIR	-178804	NR_046556	100873977		NR_046556	ENSG00000235593	RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
230949	chr9	129419971	129420330	+	0	NA	Intergenic	Intergenic	-68510	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
98640	chr17	47815171	47815530	+	0	NA	exon (NM_145798, exon 13 of 23)	exon (NM_145798, exon 13 of 23)	6444	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
100947	chr17	64485921	64486650	+	0	NA	intron (NM_007215, intron 4 of 7)	MER5B|DNA|hAT-Charlie	10769	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
201409	chr6	145963521	145965180	+	0	NA	promoter-TSS (NM_001042683)	promoter-TSS (NM_001042683)	8	NM_001370327	257218		NM_173082	ENSG00000146414	SHPRH	RAD5|bA545I5.2	SNF2 histone linker PHD RING helicase	protein-coding
131407	chr2	96276571	96278230	+	0	NA	intron (NM_014014, intron 41 of 44)	intron (NM_014014, intron 41 of 44)	11175	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
83761	chr16	28710751	28712430	+	0	NA	5' UTR (NM_001267574, exon 1 of 20)	5' UTR (NM_001267574, exon 1 of 20)	126	NM_003752	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
176856	chr4	102609051	102609350	+	0	NA	intron (NM_001382625, intron 20 of 24)	intron (NM_001382625, intron 20 of 24)	-106714	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
128692	chr2	61531551	61532050	+	0	NA	intron (NM_003400, intron 2 of 24)	intron (NM_003400, intron 2 of 24)	6556	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
178570	chr4	151126501	151126700	+	0	NA	intron (NM_001378121, intron 20 of 20)	AluY|SINE|Alu	22773	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
102691	chr17	76132851	76133180	+	0	NA	Intergenic	Intergenic	-7541	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
229755	chr9	125184001	125184200	+	0	NA	intron (NM_001123369, intron 1 of 5)	AluJr4|SINE|Alu	5703	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
184510	chr5	100900051	100901500	+	0	NA	intron (NM_175052, intron 1 of 2)	(GGGTGG)n|Simple_repeat|Simple_repeat	2507	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
31478	chr10	96577351	96578050	+	0	NA	intron (NM_020123, intron 1 of 14)	L2b|LINE|L2	9312	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
198620	chr6	107740621	107741550	+	0	NA	intron (NM_001286408, intron 4 of 6)	intron (NM_001286408, intron 4 of 6)	-8935	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
171942	chr4	884101	884830	+	0	NA	intron (NM_001318134, intron 8 of 24)	intron (NM_001318134, intron 8 of 24)	47851	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
207095	chr7	39991951	39992430	+	0	NA	intron (NM_003718, intron 2 of 13)	(GT)n|Simple_repeat|Simple_repeat	41830	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
97772	chr17	44556171	44556530	+	0	NA	Intergenic	Intergenic	-1134	NM_001466	2535		NM_001466	ENSG00000180340	FZD2	Fz2|OMOD2|fz-2|fzE2|hFz2	frizzled class receptor 2	protein-coding
185396	chr5	128111671	128112030	+	0	NA	intron (NR_046207, intron 1 of 26)	intron (NR_046207, intron 1 of 26)	28084	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
85923	chr16	57094651	57095450	+	0	NA	intron (NM_152727, intron 1 of 15)	intron (NM_152727, intron 1 of 15)	2467	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
88906	chr16	87804171	87804530	+	0	NA	Intergenic	Intergenic	-25202	NR_120309	102724467		NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA
13349	chr1	113849471	113849630	+	0	NA	intron (NM_001308297, intron 9 of 19)	intron (NM_001308297, intron 9 of 19)	-7085	NR_037864	100287722		NR_037864	ENSG00000226167	AP4B1-AS1	-	AP4B1 antisense RNA 1	ncRNA
225832	chr9	37954021	37954480	+	0	NA	intron (NM_003028, intron 4 of 5)	intron (NM_003028, intron 4 of 5)	-49897	NR_024872	92014		NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
85892	chr16	57059971	57060550	+	0	NA	intron (NM_001384955, intron 30 of 47)	L2c|LINE|L2	-32323	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
203450	chr7	377301	377500	+	0	NA	Intergenic	Intergenic	-2025	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
219863	chr8	85153371	85153900	+	0	NA	Intergenic	LTR12C|LTR|ERV1	23406	NR_134311	102723322		NR_134311	ENSG00000260493	E2F5-DT	-	E2F5 divergent transcript	ncRNA
78492	chr15	92920651	92921100	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	16476	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
187686	chr5	143328801	143329200	+	0	NA	intron (NR_157096, intron 1 of 7)	THE1D-int|LTR|ERVL-MaLR	74283	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
147515	chr20	59192001	59192280	+	0	NA	exon (NM_001384354, exon 4 of 8)	exon (NM_001384354, exon 4 of 8)	28319	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
178243	chr4	143405351	143405650	+	0	NA	intron (NM_002039, intron 1 of 9)	intron (NM_002039, intron 1 of 9)	62040	NR_036091	100423017		NR_036091	ENSG00000265623	MIR3139	-	microRNA 3139	ncRNA
232945	chr9	136940851	136941430	+	0	NA	exon (NM_018998, exon 9 of 9)	exon (NM_018998, exon 9 of 9)	3598	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
120774	chr19	45434121	45434380	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluJb|SINE|Alu	-2404	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
168729	chr3	150759401	150759800	+	0	NA	intron (NM_005067, intron 1 of 1)	MIRb|SINE|MIR	3569	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
178327	chr4	145719621	145720250	+	0	NA	intron (NM_001080531, intron 2 of 5)	intron (NM_001080531, intron 2 of 5)	39789	NM_001080531	646603		NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
45864	chr11	119673651	119673950	+	0	NA	TTS (NM_203286)	TTS (NM_203286)	55400	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
3563	chr1	16159151	16159530	+	0	NA	Intergenic	Intergenic	-3271	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
50123	chr12	45200551	45200950	+	0	NA	intron (NR_037144, intron 1 of 2)	intron (NR_037144, intron 1 of 2)	15256	NR_037144	51054		NM_015899	ENSG00000293316	PLEKHA8P1	FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2	pleckstrin homology domain containing A8 pseudogene 1	pseudo
105706	chr18	2687421	2688100	+	0	NA	intron (NM_015295, intron 5 of 47)	L1MEd|LINE|L1	32034	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
138431	chr2	205925751	205926100	+	0	NA	Intergenic	CpG	160249	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
227908	chr9	94165621	94167350	+	0	NA	Intergenic	CpG	-9472	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
153057	chr22	23283771	23283930	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	21083	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
22780	chr1	224421421	224421950	+	0	NA	intron (NM_001115113, intron 4 of 13)	FLAM_C|SINE|Alu	-12955	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
182339	chr5	59132201	59132600	+	0	NA	intron (NM_001364603, intron 5 of 15)	intron (NM_001364603, intron 5 of 15)	-92924	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
130924	chr2	87483101	87483900	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	13550	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
206386	chr7	30739771	30739930	+	0	NA	Intergenic	Intergenic	-12285	NM_006774	11185		NM_006774	ENSG00000241644	INMT	TEMT	indolethylamine N-methyltransferase	protein-coding
50788	chr12	49046971	49047130	+	0	NA	intron (NM_003482, intron 15 of 54)	AluSq2|SINE|Alu	13744	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
167171	chr3	128074201	128074400	+	0	NA	intron (NM_001319086, intron 9 of 9)	L1ME2z|LINE|L1	-1510	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
184767	chr5	110086871	110087280	+	0	NA	Intergenic	Intergenic	203893	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
51086	chr12	49963671	49964650	+	0	NA	exon (NM_001651, exon 3 of 4)	exon (NM_001651, exon 3 of 4)	-1236	NR_110589	101927318		NR_110589	ENSG00000257588	AQP5-AS1	MIAC	AQP5 and AQP2 antisense RNA 2	ncRNA
70118	chr14	100246371	100248330	+	0	NA	intron (NM_003403, intron 1 of 4)	intron (NM_003403, intron 1 of 4)	8206	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
23574	chr1	229505451	229506100	+	0	NA	intron (NM_018230, intron 2 of 25)	AluSx|SINE|Alu	2566	NM_018230	55746		NM_018230	ENSG00000069248	NUP133	GAMOS8|NPHS18|hNUP133	nucleoporin 133	protein-coding
132195	chr2	101981351	101981950	+	0	NA	Intergenic	MIRc|SINE|MIR	-1815	NR_103791	100506328		NR_103791		LINC01127	-	long intergenic non-protein coding RNA 1127	ncRNA
27776	chr10	35379001	35379700	+	0	NA	intron (NM_001282852, intron 1 of 8)	LTR52|LTR|ERVL	42476	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
227658	chr9	92971201	92972230	+	0	NA	intron (NM_001369951, intron 1 of 17)	AluSx1|SINE|Alu	-2721	NM_033086	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
148039	chr20	63215471	63217450	+	0	NA	promoter-TSS (NM_017798)	promoter-TSS (NM_017798)	-329	NM_017798	54915		NM_017798	ENSG00000149658	YTHDF1	C20orf21|DF1	YTH N6-methyladenosine RNA binding protein F1	protein-coding
121576	chr19	47274001	47276200	+	0	NA	non-coding (NR_037675, exon 2 of 2)	non-coding (NR_037675, exon 2 of 2)	215	NM_178511	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
49120	chr12	14802701	14804230	+	0	NA	promoter-TSS (NM_016312)	promoter-TSS (NM_016312)	13	NM_016312	51729		NM_016312	ENSG00000084463	WBP11	BUG13|CFAP90|FAP90|NPWBP|PPP1R165|SIPP1|VCTERL|VCTRL|WBP-11	WW domain binding protein 11	protein-coding
74530	chr15	60484171	60484530	+	0	NA	intron (NR_120341, intron 1 of 4)	intron (NR_120341, intron 1 of 4)	5172	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
213879	chr7	142391301	142392000	+	0	NA	Intergenic	Intergenic	-82877	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
120673	chr19	45104471	45104630	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	11371	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
230588	chr9	128564901	128565480	+	0	NA	intron (NM_001375312, intron 2 of 57)	AluSc|SINE|Alu	12603	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
117772	chr19	29704971	29705600	+	0	NA	5' UTR (NM_001282931, exon 3 of 4)	5' UTR (NM_001282931, exon 3 of 4)	9771	NM_001282929	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
1207	chr1	2259031	2259730	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	31061	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
51273	chr12	51170321	51170780	+	0	NA	intron (NM_001173453, intron 1 of 13)	AluJr|SINE|Alu	2585	NM_005653	7024		NM_005653	ENSG00000135457	TFCP2	LBP1C|LSF|LSF1D|SEF|TFCP2C	transcription factor CP2	protein-coding
70811	chr14	103549351	103549650	+	0	NA	Intergenic	Intergenic	12820	NM_001015049	9529		NM_004873	ENSG00000166170	BAG5	BAG-5|CMD2F	BAG cochaperone 5	protein-coding
200222	chr6	131451651	131451950	+	0	NA	Intergenic	Intergenic	-121426	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
216817	chr8	22570821	22571280	+	0	NA	exon (NM_001018003, exon 7 of 10)	exon (NM_001018003, exon 7 of 10)	5321	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
161627	chr3	43289701	43290450	+	0	NA	intron (NM_001330750, intron 1 of 4)	intron (NM_001330750, intron 1 of 4)	3535	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
139131	chr2	218995871	218996780	+	0	NA	Intergenic	CpG	-2903	NM_057094	1412		NM_057093	ENSG00000163499	CRYBA2	CTRCT42	crystallin beta A2	protein-coding
70778	chr14	103512451	103512550	+	0	NA	Intergenic	L3|LINE|CR1	10330	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
223413	chr8	143935301	143935680	+	0	NA	intron (NM_201383, intron 6 of 31)	intron (NM_201383, intron 6 of 31)	4107	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
74041	chr15	52379321	52379580	+	0	NA	intron (NM_001382348, intron 19 of 42)	intron (NM_001382348, intron 19 of 42)	-83646	NM_018728	55930		NM_018728	ENSG00000128833	MYO5C	-	myosin VC	protein-coding
193308	chr6	30100551	30101200	+	0	NA	Intergenic	CpG	-4365	NR_126470	104533120		NR_126470	ENSG00000231226	TRIM31-AS1	-	TRIM31 antisense RNA 1	ncRNA
81509	chr16	8961721	8964980	+	0	NA	5' UTR (NM_003470, exon 1 of 31)	5' UTR (NM_003470, exon 1 of 31)	556	NM_003470	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
161771	chr3	44975371	44976800	+	0	NA	promoter-TSS (NM_001349381)	promoter-TSS (NM_001349381)	89	NR_146162	51304		NM_016598	ENSG00000163812	ZDHHC3	DHHC-3|DHHC3|GODZ|ZNF373	zinc finger DHHC-type palmitoyltransferase 3	protein-coding
85501	chr16	50756451	50756950	+	0	NA	intron (NM_015247, intron 7 of 19)	intron (NM_015247, intron 7 of 19)	14285	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
71076	chr14	104855701	104855930	+	0	NA	Intergenic	Intergenic	-9453	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
145940	chr20	46030621	46030880	+	0	NA	intron (NM_020708, intron 1 of 25)	intron (NM_020708, intron 1 of 25)	1535	NM_020708	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
119366	chr19	40143351	40143900	+	0	NA	Intergenic	AluSx|SINE|Alu	-47801	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
27116	chr10	27743261	27743700	+	0	NA	5' UTR (NM_001242702, exon 2 of 7)	5' UTR (NM_001242702, exon 2 of 7)	-1135	NR_121652	101929202		NR_121652		MKX-AS1	-	MKX antisense RNA 1	ncRNA
38243	chr11	36478651	36479050	+	0	NA	Intergenic	Intergenic	31422	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
30820	chr10	86047371	86047780	+	0	NA	intron (NM_017551, intron 4 of 15)	intron (NM_017551, intron 4 of 15)	217213	NR_029907	442911		NR_029907	ENSG00000199104	MIR346	MIRN346|hsa-mir-346|miR-346|miRNA346	microRNA 346	ncRNA
146095	chr20	47610371	47611450	+	0	NA	intron (NM_181659, intron 2 of 22)	intron (NM_181659, intron 2 of 22)	109023	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
127229	chr2	38643351	38644250	+	0	NA	Intergenic	Intergenic	-22314	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
1038	chr1	1879821	1880480	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluJr4|SINE|Alu	10937	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
66859	chr14	64986301	64987530	+	0	NA	promoter-TSS (NM_002028)	promoter-TSS (NM_002028)	20	NM_002028	2342		NM_002028	ENSG00000257365	FNTB	FPTB	farnesyltransferase, CAAX box, subunit beta	protein-coding
78560	chr15	93010251	93010550	+	0	NA	intron (NM_001271, intron 35 of 38)	intron (NM_001271, intron 35 of 38)	62756	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
94929	chr17	32005901	32006100	+	0	NA	Intergenic	AluJr|SINE|Alu	-1383	NM_001321350	114659		NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
128375	chr2	55022771	55023250	+	0	NA	intron (NM_153828, intron 1 of 6)	L2|LINE|L2	-12738	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133575	chr2	121539621	121540280	+	0	NA	intron (NM_001142274, intron 2 of 37)	L1ME3B|LINE|L1	9070	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
71283	chr14	105262171	105262530	+	0	NA	intron (NM_001242788, intron 2 of 16)	intron (NM_001242788, intron 2 of 16)	-12946	NM_001242789	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
142639	chr20	5720121	5720380	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-30137	NM_001303478	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
220995	chr8	115591621	115591950	+	0	NA	intron (NM_001282903, intron 4 of 6)	intron (NM_001282903, intron 4 of 6)	76228	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
206515	chr7	33932971	33933200	+	0	NA	intron (NM_133468, intron 3 of 15)	intron (NM_133468, intron 3 of 15)	27546	NM_001365308	168667		NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
61087	chr13	48406751	48407230	+	0	NA	intron (NM_000321, intron 17 of 26)	MIR|SINE|MIR	6123	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
111172	chr19	3358951	3360000	+	0	NA	promoter-TSS (NM_001245005)	promoter-TSS (NM_001245005)	-155	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
128840	chr2	63699021	63699480	+	0	NA	Intergenic	Intergenic	110099	NM_001199111	4190		NM_005917	ENSG00000014641	MDH1	DEE88|EIEE88|HEL-S-32|KAR|MDH-s|MDHA|MGC:1375|MOR2	malate dehydrogenase 1	protein-coding
83053	chr16	22330051	22330350	+	0	NA	intron (NM_001258036, intron 19 of 19).2	AluSz6|SINE|Alu	32791	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
155941	chr22	39679251	39679550	+	0	NA	exon (NM_021096, exon 32 of 37)	exon (NM_021096, exon 32 of 37)	108647	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
89622	chr16	89315641	89316650	+	0	NA	intron (NR_045839, intron 3 of 9)	intron (NR_045839, intron 3 of 9)	-4307	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
222124	chr8	131926901	131927500	+	0	NA	intron (NM_001323557, intron 1 of 22)	L2c|LINE|L2	10427	NM_001323557	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
78595	chr15	93051621	93051880	+	0	NA	intron (NM_001166283, intron 3 of 3)	MIRb|SINE|MIR	21406	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
173899	chr4	24980101	24980330	+	0	NA	promoter-TSS (NM_173463)	promoter-TSS (NM_173463)	-11	NM_173463	91050		NM_173463	ENSG00000181982	CCDC149	-	coiled-coil domain containing 149	protein-coding
97112	chr17	42515901	42516300	+	0	NA	intron (NM_001378535, intron 22 of 22)	intron (NM_001378535, intron 22 of 22)	1912	NR_049808	100847046		NR_049808	ENSG00000283929	MIR5010	mir-5010	microRNA 5010	ncRNA
236814	chrX	79168521	79168780	+	0	NA	intron (NM_032553, intron 2 of 2)	AluJr|SINE|Alu	23962	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
70941	chr14	104650301	104651100	+	0	NA	Intergenic	Intergenic	14858	NR_135293	101929634		NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
147386	chr20	58651901	58653150	+	0	NA	intron (NM_001134772, intron 1 of 7)	intron (NM_001134772, intron 1 of 7)	1242	NM_001204868	8675		NM_003763	ENSG00000124222	STX16	SYN-16|SYN16	syntaxin 16	protein-coding
103874	chr17	79776471	79776950	+	0	NA	Intergenic	Intergenic	-1438	NM_005189	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
215111	chr7	155328121	155329050	+	0	NA	Intergenic	Intergenic	30707	NM_005542	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
176952	chr4	103075051	103075150	+	0	NA	intron (NM_001370207, intron 1 of 10)	intron (NM_001370207, intron 1 of 10)	1661	NM_001370204	133308		NM_178833	ENSG00000164038	SLC9B2	NHA2|NHE10|NHEDC2	solute carrier family 9 member B2	protein-coding
90029	chr16	89899751	89900050	+	0	NA	intron (NM_014972, intron 11 of 17)	intron (NM_014972, intron 11 of 17)	-18962	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
120145	chr19	42221651	42221950	+	0	NA	intron (NM_001314033, intron 1 of 2)	AluJo|SINE|Alu	1488	NM_001314033	116115		NM_133444	ENSG00000167625	ZNF526	DENNED	zinc finger protein 526	protein-coding
192020	chr6	16423571	16424030	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	185213	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
106883	chr18	24427801	24428000	+	0	NA	intron (NM_018439, intron 1 of 10)	intron (NM_018439, intron 1 of 10)	1230	NM_018439	55364		NM_018439	ENSG00000154059	IMPACT	RWDD5	impact RWD domain protein	protein-coding
182500	chr5	64765971	64766530	+	0	NA	intron (NM_173829, intron 1 of 4)	L2b|LINE|L2	2441	NM_173829	285672		NM_173829	ENSG00000153006	SREK1IP1	P18SRP|SFRS12IP1	SREK1 interacting protein 1	protein-coding
158534	chr3	3200701	3201000	+	0	NA	Intergenic	Intergenic	-21133	NM_001173482	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
194279	chr6	32639351	32639650	+	0	NA	intron (NM_002122, intron 1 of 4)	intron (NM_002122, intron 1 of 4)	2094	NM_002122	3117		NM_002122	ENSG00000196735	HLA-DQA1	CELIAC1|DQ-A1|DQA1|HLA-DQA|HLA-DQA1*|HLA-DQB1	major histocompatibility complex, class II, DQ alpha 1	protein-coding
133462	chr2	119761001	119761400	+	0	NA	intron (NM_002830, intron 1 of 26)	intron (NM_002830, intron 1 of 26)	1278	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
176602	chr4	99000201	99000400	+	0	NA	intron (NM_015143, intron 1 of 10)	intron (NM_015143, intron 1 of 10)	2913	NR_037455	100500867		NR_037455	ENSG00000265213	MIR3684	-	microRNA 3684	ncRNA
110927	chr19	2785101	2787150	+	0	NA	intron (NM_003249, intron 1 of 12)	L2a|LINE|L2	622	NM_003249	7064		NM_003249	ENSG00000172009	THOP1	EP24.15|MEPD_HUMAN|MP78|TOP	thimet oligopeptidase 1	protein-coding
145696	chr20	45016151	45016450	+	0	NA	intron (NM_006282, intron 9 of 10)	intron (NM_006282, intron 9 of 10)	49788	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
8322	chr1	40160071	40160300	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1202	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
200008	chr6	129251801	129252400	+	0	NA	exon (NM_001079823, exon 14 of 64)	exon (NM_001079823, exon 14 of 64)	368962	NM_001079823	3908		NM_000426	ENSG00000196569	LAMA2	LAMM|MDC1A	laminin subunit alpha 2	protein-coding
45204	chr11	117817621	117818600	+	0	NA	promoter-TSS (NM_001367905)	promoter-TSS (NM_001367905)	-596	NM_001367905	57453		NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
58448	chr12	132068251	132068550	+	0	NA	intron (NM_015409, intron 50 of 52)	MIRb|SINE|MIR	-15883	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
113076	chr19	8256101	8256300	+	0	NA	intron (NM_024552, intron 6 of 11)	intron (NM_024552, intron 6 of 11)	46830	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
16001	chr1	151995771	151996180	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-2116	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
150183	chr21	39303521	39303980	+	0	NA	intron (NM_033656, intron 4 of 40)	AluJb|SINE|Alu	9882	NM_033656	54014		NM_018963	ENSG00000185658	BRWD1	C21orf107|CILD51|DCAF19|N143|WDR9|WRD9	bromodomain and WD repeat domain containing 1	protein-coding
15732	chr1	151058651	151058760	+	0	NA	intron (NM_001038707, intron 1 of 5)	intron (NM_001038707, intron 1 of 5)	917	NM_020239	56882		NM_020239	ENSG00000197622	CDC42SE1	SCIP1|SPEC1	CDC42 small effector 1	protein-coding
188734	chr5	157487371	157487730	+	0	NA	intron (NM_033274, intron 21 of 22)	intron (NM_033274, intron 21 of 22)	27337	NM_001099287	348938		NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN|NIPA4|SLC57A6	NIPA like domain containing 4	protein-coding
152700	chr22	21633971	21634680	+	0	NA	exon (NM_152612, exon 3 of 5)	exon (NM_152612, exon 3 of 5)	1528	NM_001331066	164592		NM_152612	ENSG00000161180	CCDC116	-	coiled-coil domain containing 116	protein-coding
84678	chr16	30766651	30767100	+	0	NA	exon (NM_001286572, exon 11 of 20)	exon (NM_001286572, exon 11 of 20)	4553	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
237435	chrX	119675521	119676050	+	0	NA	intron (NM_145799, intron 1 of 10)	intron (NM_145799, intron 1 of 10)	17383	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
221275	chr8	122800421	122800830	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	18970	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
136830	chr2	182866251	182866550	+	0	NA	exon (NM_001463, exon 1 of 6)	exon (NM_001463, exon 1 of 6)	237	NM_001463	2487		NM_001463	ENSG00000162998	FRZB	FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ	frizzled related protein	protein-coding
115785	chr19	16364001	16364950	+	0	NA	intron (NR_047665, intron 21 of 22)	intron (NR_047665, intron 21 of 22)	39649	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
122149	chr19	48870351	48870550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1833	NM_001161354	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
10303	chr1	64859221	64859480	+	0	NA	intron (NM_001321857, intron 9 of 24)	L3|LINE|CR1	107199	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
12866	chr1	110130371	110130730	+	0	NA	Intergenic	CpG	18107	NM_203412	164153		NM_203412	ENSG00000186150	UBL4B	-	ubiquitin like 4B	protein-coding
178758	chr4	153247371	153247530	+	0	NA	intron (NM_001375516, intron 2 of 12)	AluSz6|SINE|Alu	-9909	NM_001302694	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
89275	chr16	88684101	88684330	+	0	NA	intron (NM_178310, intron 1 of 2)	intron (NM_178310, intron 1 of 2)	2292	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
109635	chr19	993701	994430	+	0	NA	exon (NM_024100, exon 9 of 10)	exon (NM_024100, exon 9 of 10)	-6354	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
186072	chr5	134091851	134092230	+	0	NA	Intergenic	MIRb|SINE|MIR	-22641	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
57147	chr12	121240001	121241600	+	0	NA	exon (NM_001270485, exon 17 of 17)	exon (NM_001270485, exon 17 of 17)	30671	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
7120	chr1	32174321	32175030	+	0	NA	3' UTR (NM_012316, exon 14 of 14)	3' UTR (NM_012316, exon 14 of 14)	-5000	NM_175852	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
145668	chr20	44977151	44977530	+	0	NA	intron (NM_006282, intron 2 of 10)	intron (NM_006282, intron 2 of 10)	10828	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
63394	chr13	114069051	114069300	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	8780	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171846	chr4	704401	704700	+	0	NA	Intergenic	CpG	-1282	NM_006315	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
142701	chr20	8153071	8153850	+	0	NA	intron (NM_015192, intron 2 of 31)	intron (NM_015192, intron 2 of 31)	21194	NM_182734	23236		NM_015192	ENSG00000182621	PLCB1	DEE12|EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B	phospholipase C beta 1	protein-coding
227244	chr9	89318211	89319850	+	0	NA	5' UTR (NM_001282690, exon 1 of 17)	5' UTR (NM_001282690, exon 1 of 17)	179	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
108091	chr18	61833401	61833630	+	0	NA	intron (NM_173557, intron 1 of 1)	intron (NM_173557, intron 1 of 1)	59492	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
122092	chr19	48746151	48746330	+	0	NA	promoter-TSS (NR_135832)	promoter-TSS (NR_135832)	-308	NM_001321865	284359		NM_182575	ENSG00000182264	IZUMO1	IZUMO|OBF	izumo sperm-oocyte fusion 1	protein-coding
42038	chr11	67442911	67444930	+	0	NA	promoter-TSS (NM_020441)	promoter-TSS (NM_020441)	-99	NM_001018070	57175		NM_020441	ENSG00000172725	CORO1B	CORONIN-2	coronin 1B	protein-coding
218590	chr8	55871571	55871730	+	0	NA	Intergenic	Intergenic	-8185	NM_002350	4067		NM_002350	ENSG00000254087	LYN	JTK8|SAIDV|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
225936	chr9	40984051	40984150	+	0	NA	Intergenic	L1MA6|LINE|L1	-8161	NR_156730	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
159318	chr3	13014941	13016000	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-28369	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
77507	chr15	84656751	84657100	+	0	NA	intron (NM_021077, intron 2 of 2)	intron (NM_021077, intron 2 of 2)	1274	NM_205858	4828		NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
119398	chr19	40232621	40232950	+	0	NA	3' UTR (NM_001330511, exon 12 of 12)	3' UTR (NM_001330511, exon 12 of 12)	-6096	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
107738	chr18	50279671	50280030	+	0	NA	intron (NM_001204138, intron 2 of 16)	intron (NM_001204138, intron 2 of 16)	1673	NM_001323949	4152		NM_002384	ENSG00000141644	MBD1	CXXC3|PCM1|RFT	methyl-CpG binding domain protein 1	protein-coding
47806	chr12	6579821	6580450	+	0	NA	intron (NM_001273, intron 33 of 39)	AluSx|SINE|Alu	1474	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
673	chr1	1378501	1378880	+	0	NA	Intergenic	Intergenic	-3483	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
193971	chr6	31712271	31712900	+	0	NA	intron (NR_003673, intron 2 of 2)	intron (NR_003673, intron 2 of 2)	1480	NR_003673	79136		NM_024123		LY6G6E	C6orf22|G6e	lymphocyte antigen 6 family member G6E (pseudogene)	pseudo
111404	chr19	3767871	3768400	+	0	NA	TTS (NM_001319074)	TTS (NM_001319074)	4093	NM_001319074	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
121451	chr19	47040521	47041580	+	0	NA	exon (NM_001321086, exon 6 of 8)	exon (NM_001321086, exon 6 of 8)	5733	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
73529	chr15	43805001	43805600	+	0	NA	TTS (NM_016400)	TTS (NM_016400)	4701	NM_016400	25764		NM_016400	ENSG00000242028	HYPK	C15orf63|HSPC136	huntingtin interacting protein K	protein-coding
188633	chr5	157218571	157219080	+	0	NA	intron (NM_005546, intron 5 of 16)	MER5A|DNA|hAT-Charlie	37985	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
164544	chr3	63964401	63964800	+	0	NA	intron (NM_001177387, intron 4 of 12)	intron (NM_001177387, intron 4 of 12)	-3194	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
127047	chr2	37229471	37229930	+	0	NA	intron (NM_005760, intron 1 of 15)	L1ME4b|LINE|L1	1896	NM_005760	10153		NM_005760	ENSG00000115816	CEBPZ	CBF|CBF2|HSP-CBF|NOC1	CCAAT enhancer binding protein zeta	protein-coding
175984	chr4	81513051	81513350	+	0	NA	Intergenic	Intergenic	-41293	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
162324	chr3	47511601	47511980	+	0	NA	intron (NM_001031703, intron 1 of 6)	intron (NM_001031703, intron 1 of 6)	1555	NM_001363957	54859		NM_017713	ENSG00000163832	ELP6	C3orf75|TMEM103	elongator acetyltransferase complex subunit 6	protein-coding
90197	chr17	413971	414550	+	0	NA	promoter-TSS (NR_136407)	promoter-TSS (NR_136407)	-237	NR_136407	105371430		NR_136407	ENSG00000241525	LOC105371430	-	uncharacterized LOC105371430	ncRNA
210242	chr7	99383651	99383950	+	0	NA	intron (NM_005720, intron 1 of 9)	intron (NM_005720, intron 1 of 9)	9070	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
29033	chr10	67231051	67231230	+	0	NA	intron (NM_001291133, intron 6 of 8)	L1PA3|LINE|L1	172270	NR_106973	102466814		NR_106973	ENSG00000276866	MIR7151	hsa-mir-7151	microRNA 7151	ncRNA
222999	chr8	143271071	143271880	+	0	NA	intron (NM_138465, intron 2 of 3)	intron (NM_138465, intron 2 of 3)	4030	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
112888	chr19	7624921	7625550	+	0	NA	intron (NM_020196, intron 6 of 18)	intron (NM_020196, intron 6 of 18)	4310	NM_020196	56949		NM_020196	ENSG00000076924	XAB2	HCNP|HCRN|NTC90|SYF1	XPA binding protein 2	protein-coding
11298	chr1	89274221	89274900	+	0	NA	Intergenic	Intergenic	-1700	NM_052942	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
140635	chr2	233469371	233469600	+	0	NA	3' UTR (NM_152879, exon 30 of 30)	3' UTR (NM_152879, exon 30 of 30)	20413	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
216305	chr8	12658701	12660080	+	0	NA	non-coding (NR_047662, exon 2 of 9)	non-coding (NR_047662, exon 2 of 9)	6221	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
62500	chr13	99427501	99427700	+	0	NA	Intergenic	Intergenic	71469	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
180881	chr5	33891771	33892130	+	0	NA	promoter-TSS (NM_001324512)	promoter-TSS (NM_001324512)	40	NM_001324511	81792		NM_030955	ENSG00000151388	ADAMTS12	PRO4389	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein-coding
84367	chr16	30237551	30238080	+	0	NA	intron (NM_001321892, intron 3 of 8)	L1ME2z|LINE|L1	8040	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
26959	chr10	26606251	26606600	+	0	NA	Intergenic	Intergenic	16560	NR_026793	645528		NR_026793	ENSG00000290444	FAM238A	C10orf50|LINC00264|NCRNA00264|bA128B16.2	family with sequence similarity 238 member A	ncRNA
135734	chr2	169464571	169465200	+	0	NA	Intergenic	Intergenic	-14609	NM_152384	129880		NM_152384	ENSG00000163093	BBS5	-	Bardet-Biedl syndrome 5	protein-coding
40672	chr11	64755421	64755780	+	0	NA	intron (NM_001164716, intron 3 of 17)	intron (NM_001164716, intron 3 of 17)	4374	NM_005609	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
217484	chr8	29020571	29020730	+	0	NA	intron (NM_001324391, intron 6 of 10)	intron (NM_001324391, intron 6 of 10)	129336	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
104372	chr17	81020421	81020800	+	0	NA	Intergenic	Intergenic	14109	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
200464	chr6	135135921	135136180	+	0	NA	Intergenic	Intergenic	-45258	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
84169	chr16	29807201	29808740	+	0	NA	intron (NM_001276275, intron 3 of 5)	intron (NM_001276275, intron 3 of 5)	1441	NR_074080	4150		NM_002383	ENSG00000103495	MAZ	PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87	MYC associated zinc finger protein	protein-coding
194246	chr6	32472701	32472900	+	0	NA	Intergenic	Intergenic	32913	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
219613	chr8	80093641	80093750	+	0	NA	intron (NM_001287144, intron 1 of 5)	intron (NM_001287144, intron 1 of 5)	-12864	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
90399	chr17	1297801	1298030	+	0	NA	intron (NM_172367, intron 2 of 2)	intron (NM_172367, intron 2 of 2)	18253	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
199102	chr6	111675501	111675750	+	0	NA	intron (NM_001370529, intron 10 of 11)	AluSz|SINE|Alu	-69351	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
184889	chr5	112709471	112710130	+	0	NA	intron (NM_001354902, intron 1 of 14)	AluJb|SINE|Alu	2302	NM_001354902	324		NM_000038	ENSG00000134982	APC	BTPS2|DESMD|DP2|DP2.5|DP3|GS|PPP1R46	APC regulator of WNT signaling pathway	protein-coding
76842	chr15	77543071	77543900	+	0	NA	Intergenic	Intergenic	17890	NR_135692	101929457		NR_135692	ENSG00000259362	LOC101929457	-	uncharacterized LOC101929457	ncRNA
80710	chr16	3076871	3077950	+	0	NA	Intergenic	HERVK9-int|LTR|ERVK	11626	NM_001012636	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
102538	chr17	75826521	75826950	+	0	NA	TTS (NM_001080419)	TTS (NM_001080419)	17669	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
224647	chr9	20624751	20625300	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-2526	NM_004529	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
5568	chr1	25922351	25924000	+	0	NA	Intergenic	Intergenic	-16298	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
166832	chr3	122913151	122913450	+	0	NA	exon (NM_001256348, exon 16 of 22)	exon (NM_001256348, exon 16 of 22)	26787	NR_024618	100129550		NR_024618	ENSG00000273033	LINC02035	-	long intergenic non-protein coding RNA 2035	ncRNA
113343	chr19	8641901	8642350	+	0	NA	intron (NM_001378599, intron 4 of 6)	AluJr|SINE|Alu	11492	NM_001378599	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
180387	chr5	8457051	8458030	+	0	NA	promoter-TSS (NR_039984)	promoter-TSS (NR_039984)	24	NR_039984	729506		NR_039984	ENSG00000245729	LINC02226	-	long intergenic non-protein coding RNA 2226	ncRNA
75980	chr15	70527921	70529380	+	0	NA	Intergenic	Intergenic	-22722	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
230872	chr9	129177101	129178680	+	0	NA	exon (NM_203434, exon 1 of 1)	exon (NM_203434, exon 1 of 1)	371	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
236200	chrX	65677651	65678050	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	10196	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
140552	chr2	233266071	233266500	+	0	NA	intron (NM_001190266, intron 5 of 17).2	AluJr|SINE|Alu	-9441	NR_003008	677775		NR_003008	ENSG00000252010	SCARNA5	U87	small Cajal body-specific RNA 5	ncRNA
186168	chr5	134190951	134191050	+	0	NA	Intergenic	Intergenic	-13967	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
113227	chr19	8477651	8478430	+	0	NA	intron (NM_031203, intron 13 of 16)	MIRb|SINE|MIR	24600	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
35743	chr11	2132921	2133400	+	0	NA	TTS (NR_030158)	TTS (NR_030158)	1049	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
148206	chr20	63564801	63565230	+	0	NA	exon (NM_001037335, exon 9 of 20)	exon (NM_001037335, exon 9 of 20)	2739	NM_033405	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
191991	chr6	16227021	16227280	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11437	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
69332	chr14	93892851	93893280	+	0	NA	Intergenic	Intergenic	-25829	NM_001207071	90050		NM_138344	ENSG00000140067	FAM181A	C14orf152	family with sequence similarity 181 member A	protein-coding
176420	chr4	89256321	89256880	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	51200	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
30569	chr10	79904501	79905350	+	0	NA	promoter-TSS (NR_033857)	promoter-TSS (NR_033857)	27	NR_033857	100288974		NR_033857		BMS1P21	-	BMS1 pseudogene 21	pseudo
216667	chr8	22142801	22143000	+	0	NA	promoter-TSS (NM_001316965)	promoter-TSS (NM_001316965)	-993	NM_001316965	80346		NM_025232	ENSG00000168476	REEP4	C8orf20|PP432|Yip2c	receptor accessory protein 4	protein-coding
48704	chr12	10615471	10616050	+	0	NA	Intergenic	MER81|DNA|hAT-Blackjack	-2151	NM_018048	55110		NM_018048	ENSG00000111196	MAGOHB	MGN2|mago|magoh	mago homolog B, exon junction complex subunit	protein-coding
219714	chr8	81002901	81003650	+	0	NA	intron (NM_018440, intron 3 of 8)	MER5A1|DNA|hAT-Charlie	108793	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
92985	chr17	17151801	17152600	+	0	NA	intron (NM_015134, intron 12 of 22)	intron (NM_015134, intron 12 of 22)	54133	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
157500	chr22	45327971	45329100	+	0	NA	intron (NR_146323, intron 7 of 11)	AluJb|SINE|Alu	10092	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
126559	chr2	28623221	28623480	+	0	NA	intron (NM_153021, intron 49 of 57)	intron (NM_153021, intron 49 of 57)	56993	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
78829	chr15	99729971	99730230	+	0	NA	intron (NM_001284420, intron 1 of 1)	intron (NM_001284420, intron 1 of 1)	3337	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
213024	chr7	131028951	131029850	+	0	NA	intron (NR_109850, intron 3 of 5)	L2a|LINE|L2	77630	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
57349	chr12	121772371	121772530	+	0	NA	intron (NM_001080825, intron 8 of 11)	AluSx1|SINE|Alu	21238	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
135633	chr2	168212351	168212650	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	35095	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
220482	chr8	100471671	100472650	+	0	NA	Intergenic	Intergenic	87599	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
158086	chr22	49990451	49990750	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	22165	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
85429	chr16	50368201	50369900	+	0	NA	promoter-TSS (NM_001173984)	promoter-TSS (NM_001173984)	-62	NM_013263	29117		NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4|SMARCI1	bromodomain containing 7	protein-coding
81421	chr16	8796371	8796530	+	0	NA	exon (NM_015421, exon 2 of 2)	exon (NM_015421, exon 2 of 2)	1189	NM_015421	25880		NM_015421	ENSG00000184857	TMEM186	C16orf51	transmembrane protein 186	protein-coding
223295	chr8	143770621	143771300	+	0	NA	intron (NM_001381874, intron 3 of 13)	CpG	-10452	NR_136279	105375800		NR_136279		LOC105375800	-	SREBF pathway regulator in golgi 1 pseudogene	pseudo
99807	chr17	51429951	51430730	+	0	NA	Intergenic	LTR19B|LTR|ERV1	-5087	NR_146897	105371828		NR_146897	ENSG00000267452	LINC02073	-	long intergenic non-protein coding RNA 2073	ncRNA
15474	chr1	150359501	150360250	+	0	NA	Intergenic	L1MC1|LINE|L1	-4236	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
51061	chr12	49827651	49829050	+	0	NA	promoter-TSS (NR_027499)	promoter-TSS (NR_027499)	63	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
55069	chr12	96495101	96496450	+	0	NA	intron (NM_001367885, intron 1 of 68)	intron (NM_001367885, intron 1 of 68)	6198	NM_001367885	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
236081	chrX	56766801	56767000	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-29316	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
147501	chr20	59172471	59172850	+	0	NA	intron (NM_178457, intron 1 of 5)	ERVL-E-int|LTR|ERVL	8839	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
209261	chr7	75893701	75894530	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	15081	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
151016	chr21	44473851	44474150	+	0	NA	Intergenic	Intergenic	-11571	NR_155204	111216286		NR_155204		LINC02575	-	long intergenic non-protein coding RNA 2575	ncRNA
111096	chr19	3194451	3194550	+	0	NA	intron (NM_020170, intron 3 of 14)	MER58A|DNA|hAT-Charlie	8570	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
82932	chr16	21836201	21838200	+	0	NA	exon (NM_130464, exon 8 of 12)	exon (NM_130464, exon 8 of 12)	-16715	NM_001301064	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
30738	chr10	84159071	84159230	+	0	NA	Intergenic	Intergenic	12926	NR_134505	642934		NR_134505	ENSG00000285972	CERNA2	HOST2|lncRNA-HOST2	competing endogenous lncRNA 2 for microRNA let-7b	ncRNA
109552	chr19	880471	880630	+	0	NA	intron (NM_005481, intron 7 of 15)	intron (NM_005481, intron 7 of 15)	12637	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
31036	chr10	88888221	88888480	+	0	NA	intron (NM_020799, intron 1 of 10)	intron (NM_020799, intron 1 of 10)	8105	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
89755	chr16	89449701	89450500	+	0	NA	intron (NR_110931, intron 2 of 2)	intron (NR_110931, intron 2 of 2)	19182	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
105569	chr18	93751	94730	+	0	NA	Intergenic	Intergenic	-14825	NR_033770	727758		NR_033770	ENSG00000290877	ROCK1P1	ROCK1P	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
204973	chr7	6381271	6382480	+	0	NA	intron (NM_018890, intron 1 of 6)	intron (NM_018890, intron 1 of 6)	7348	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
235567	chrX	47379901	47380880	+	0	NA	intron (NM_003446, intron 1 of 3)	MER50|LTR|ERV1	-8260	NR_003710	100124540		NR_003710	ENSG00000221459	SNORA11C	-	small nucleolar RNA, H/ACA box 11C	snoRNA
190271	chr5	179494151	179494680	+	0	NA	Intergenic	AluSx|SINE|Alu	22296	NR_149047	100128340		NR_149047		LOC100128340	-	uncharacterized LOC100128340	ncRNA
18454	chr1	161543201	161543980	+	0	NA	intron (NM_001329122, intron 3 of 3)	L1MC4|LINE|L1	6228	NM_000569	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
107390	chr18	46093301	46093500	+	0	NA	intron (NM_004046, intron 2 of 11)	AluSz6|SINE|Alu	4896	NM_004046	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
119730	chr19	41224621	41224950	+	0	NA	intron (NM_021913, intron 4 of 19)	intron (NM_021913, intron 4 of 19)	-1970	NM_001278599	558		NM_001699	ENSG00000167601	AXL	ARK|AXL3|JTK11|Tyro7|UFO	AXL receptor tyrosine kinase	protein-coding
203826	chr7	1417351	1417950	+	0	NA	Intergenic	L1MC3|LINE|L1	41820	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
73860	chr15	50247811	50248580	+	0	NA	intron (NM_001306146, intron 9 of 10)	intron (NM_001306146, intron 9 of 10)	17531	NM_002112	3067		NM_002112	ENSG00000140287	HDC	-	histidine decarboxylase	protein-coding
116533	chr19	18196721	18196980	+	0	NA	TTS (NM_002866)	TTS (NM_002866)	3632	NM_032683	84769		NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial inner membrane protein like 2	protein-coding
58626	chr12	132498451	132498880	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	-6741	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
74610	chr15	60590271	60590500	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	2141	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
55603	chr12	106855051	106855350	+	0	NA	intron (NR_147131, intron 7 of 12)	intron (NR_147131, intron 7 of 12)	-80369	NR_040246	100287944		NR_040246	ENSG00000257545	LOC100287944	-	uncharacterized LOC100287944	ncRNA
40225	chr11	63553001	63553200	+	0	NA	intron (NM_017878, intron 3 of 3)	intron (NM_017878, intron 3 of 3)	10279	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
14802	chr1	146259901	146260580	+	0	NA	Intergenic	Intergenic	-31208	NM_001364006	388677		NM_203458	ENSG00000264343	NOTCH2NLA	N2N|NOTCH2NL	notch 2 N-terminal like A	protein-coding
144705	chr20	36490421	36490700	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	28765	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
105680	chr18	2651271	2651630	+	0	NA	TTS (NR_033754)	TTS (NR_033754)	3945	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
205186	chr7	7653251	7653780	+	0	NA	intron (NM_002947, intron 4 of 7)	intron (NM_002947, intron 4 of 7)	12763	NM_001302348	729852		NM_001302348	ENSG00000219545	UMAD1	RPA3-AS1|RPA3OS	UBAP1-MVB12-associated (UMA) domain containing 1	protein-coding
23735	chr1	232528621	232529080	+	0	NA	intron (NM_001377488, intron 2 of 21)	intron (NM_001377488, intron 2 of 21)	101283	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
1994	chr1	6701121	6702200	+	0	NA	intron (NM_018198, intron 1 of 15)	CpG	156	NM_018198	55735		NM_018198	ENSG00000007923	DNAJC11	dJ126A5.1	DnaJ heat shock protein family (Hsp40) member C11	protein-coding
213942	chr7	142685951	142687080	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	20216	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
54497	chr12	92089021	92089480	+	0	NA	intron (NR_132341, intron 1 of 4)	A-rich|Low_complexity|Low_complexity	52463	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
198745	chr6	108562551	108563400	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	2058	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
125028	chr2	9591651	9591950	+	0	NA	intron (NM_006826, intron 2 of 5)	L2c|LINE|L2	-35970	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
73401	chr15	42708671	42708830	+	0	NA	intron (NM_020759, intron 26 of 32)	U13_|snRNA|snRNA	28378	NM_138477	146059		NM_138477	ENSG00000140326	CDAN1	CDA1|CDAI|CDAN1A|DLT|PRO1295	codanin 1	protein-coding
238893	chrX	154590401	154590700	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	5396	NM_001327	1485		NM_001327	ENSG00000184033	CTAG1B	CT6.1|CTAG|CTAG1|ESO1|LAGE-2|LAGE2B|NY-ESO-1	cancer/testis antigen 1B	protein-coding
73895	chr15	50676851	50676950	+	0	NA	intron (NR_149152, intron 1 of 38)	L1MEb|LINE|L1	9897	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
111068	chr19	3152471	3152630	+	0	NA	intron (NM_002068, intron 4 of 6)	intron (NM_002068, intron 4 of 6)	2625	NR_110670	100996351		NR_110670	ENSG00000267551	GNA15-DT	-	GNA15 divergent transcript	ncRNA
5491	chr1	25700671	25700830	+	0	NA	intron (NM_001385185, intron 1 of 10)	intron (NM_001385185, intron 1 of 10)	4595	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
101894	chr17	74368201	74368680	+	0	NA	intron (NM_001331076, intron 1 of 3)	intron (NM_001331076, intron 1 of 3)	934	NM_001331077	350383		NM_181790	ENSG00000257008	GPR142	GPRg1b|PGR2	G protein-coupled receptor 142	protein-coding
187700	chr5	143361551	143361850	+	0	NA	intron (NR_157096, intron 1 of 7)	Tigger8|DNA|TcMar-Tigger	41583	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
47281	chr12	1616601	1616800	+	0	NA	promoter-TSS (NM_030775)	promoter-TSS (NM_030775)	-356	NM_030775	81029		NM_030775	ENSG00000111186	WNT5B	-	Wnt family member 5B	protein-coding
18232	chr1	161037401	161037780	+	0	NA	TTS (NM_001113207)	TTS (NM_001113207)	1374	NM_001113207	100131187		NM_001113205	ENSG00000215845	TSTD1	KAT|TST	thiosulfate sulfurtransferase like domain containing 1	protein-coding
87584	chr16	73054671	73054830	+	0	NA	intron (NM_001164766, intron 1 of 8)	intron (NM_001164766, intron 1 of 8)	4271	NM_001164766	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
83786	chr16	28749101	28749300	+	0	NA	Intergenic	Intergenic	-3235	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
163460	chr3	50611151	50613070	+	0	NA	promoter-TSS (NM_013324)	promoter-TSS (NM_013324)	248	NM_001243926	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
171879	chr4	776701	777150	+	0	NA	Intergenic	L1ME1|LINE|L1	4923	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
9193	chr1	45609701	45610280	+	0	NA	intron (NM_001195193, intron 4 of 12)	AluSx4|SINE|Alu	14064	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
7231	chr1	32331221	32331830	+	0	NA	exon (NM_004964, exon 10 of 14)	exon (NM_004964, exon 10 of 14)	4708	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
131595	chr2	96867471	96867880	+	0	NA	intron (NM_017789, intron 2 of 14)	intron (NM_017789, intron 2 of 14)	2405	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
3551	chr1	16150971	16151530	+	0	NA	intron (NM_004431, intron 1 of 16)	MIR3|SINE|MIR	4819	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
16873	chr1	155811101	155811950	+	0	NA	intron (NM_001282861, intron 10 of 20)	AluSx1|SINE|Alu	-27693	NR_132767	106633816		NR_132767		SCARNA26B	-	small Cajal body-specific RNA 26B	ncRNA
41175	chr11	65622971	65623450	+	0	NA	intron (NM_032223, intron 11 of 34)	intron (NM_032223, intron 11 of 34)	6898	NM_032223	399909		NM_032223	ENSG00000197136	PCNX3	PCNXL3	pecanex 3	protein-coding
70258	chr14	101707301	101708430	+	0	NA	Intergenic	Intergenic	-22572	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
180014	chr5	1012451	1012750	+	0	NA	intron (NM_001271082, intron 3 of 10).2	intron (NM_001271082, intron 3 of 10).2	3638	NM_001271082	85409		NM_033120	ENSG00000145506	NKD2	Naked2	NKD inhibitor of WNT signaling pathway 2	protein-coding
153112	chr22	23675371	23675530	+	0	NA	intron (NR_024448, intron 10 of 11)	intron (NR_024448, intron 10 of 11)	-15411	NM_001329424	266747		NM_153615	ENSG00000159496	RGL4	Rgr	ral guanine nucleotide dissociation stimulator like 4	protein-coding
113192	chr19	8416051	8416350	+	0	NA	intron (NM_001369776, intron 1 of 5)	AluSg|SINE|Alu	-2152	NM_001369779	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
235710	chrX	48899571	48900730	+	0	NA	intron (NM_144495, intron 2 of 5)	AluY|SINE|Alu	1658	NM_001167992	10084		NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
122176	chr19	48903401	48904400	+	0	NA	intron (NM_006184, intron 2 of 12)	(ATGG)n|Simple_repeat|Simple_repeat	3588	NM_006184	4924		NM_006184	ENSG00000104805	NUCB1	CALNUC|NUC	nucleobindin 1	protein-coding
222670	chr8	141207601	141208000	+	0	NA	3' UTR (NM_001286646, exon 9 of 9)	3' UTR (NM_001286646, exon 9 of 9)	20774	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
163791	chr3	52397901	52398750	+	0	NA	intron (NM_015512, intron 75 of 77)	AluSc|SINE|Alu	11683	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
79381	chr16	653171	653330	+	0	NA	intron (NM_145294, intron 10 of 40)	intron (NM_145294, intron 10 of 40)	3885	NM_145294	197335		NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19|POC16	WD repeat domain 90	protein-coding
186196	chr5	134221771	134222980	+	0	NA	intron (NM_002715, intron 1 of 6)	intron (NM_002715, intron 1 of 6)	3179	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
46969	chr11	134762351	134762650	+	0	NA	non-coding (NR_147836, exon 2 of 2)	non-coding (NR_147836, exon 2 of 2)	26555	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
199474	chr6	118559751	118559860	+	0	NA	3' UTR (NM_002667, exon 2 of 2)	3' UTR (NM_002667, exon 2 of 2)	11509	NM_002667	5350		NM_002667	ENSG00000198523	PLN	CMD1P|CMH18|PLB	phospholamban	protein-coding
5001	chr1	24391021	24391700	+	0	NA	intron (NM_178122, intron 2 of 7)	intron (NM_178122, intron 2 of 7)	-22127	NM_001322854	57185		NM_020448	ENSG00000001461	NIPAL3	DJ462O23.2|NPAL3|SLC57A5	NIPA like domain containing 3	protein-coding
63024	chr13	112768401	112769380	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	-14159	NR_046661	100874205		NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
113049	chr19	8050071	8051200	+	0	NA	Intergenic	CpG	-2127	NM_001201359	6370		NM_005624	ENSG00000131142	CCL25	Ck beta-15|Ckb15|SCYA25|TECK|TECKvar	C-C motif chemokine ligand 25	protein-coding
165080	chr3	71479821	71480280	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluSg|SINE|Alu	62039	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
32850	chr10	110059721	110060400	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-51679	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
33330	chr10	116720421	116720880	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	21916	NM_025015	259217		NM_025015	ENSG00000165868	HSPA12A	-	heat shock protein family A (Hsp70) member 12A	protein-coding
182557	chr5	65867651	65867750	+	0	NA	Intergenic	Intergenic	-58854	NM_001006600	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
41416	chr11	66049951	66050250	+	0	NA	promoter-TSS (NM_033036)	promoter-TSS (NM_033036)	-939	NM_033036	89792		NM_033036	ENSG00000175229	GAL3ST3	GAL3ST-3|GAL3ST2	galactose-3-O-sulfotransferase 3	protein-coding
44009	chr11	94769021	94769430	+	0	NA	intron (NM_001301007, intron 1 of 11)	CpG	869	NM_001301007	154810		NM_130847	ENSG00000166025	AMOTL1	JEAP	angiomotin like 1	protein-coding
84877	chr16	31182201	31183130	+	0	NA	intron (NM_001170634, intron 3 of 14)	intron (NM_001170634, intron 3 of 14)	2526	NM_004960	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
142382	chr20	3807201	3808130	+	0	NA	promoter-TSS (NR_109859)	promoter-TSS (NR_109859)	-829	NR_109859	101929125		NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
237527	chrX	120308401	120308600	+	0	NA	intron (NM_001104544, intron 1 of 8)	intron (NM_001104544, intron 1 of 8)	2961	NM_001104544	55026		NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
107529	chr18	48412371	48412650	+	0	NA	promoter-TSS (NM_001371287)	promoter-TSS (NM_001371287)	75	NM_001371287	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
181012	chr5	35852051	35853050	+	0	NA	Intergenic	Intergenic	-4341	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
57641	chr12	122515501	122516150	+	0	NA	intron (NR_036436, intron 5 of 9)	AluSx1|SINE|Alu	11111	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
184253	chr5	96700821	96701650	+	0	NA	intron (NM_001375317, intron 3 of 30)	intron (NM_001375317, intron 3 of 30)	-1425	NM_001042446	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
23103	chr1	226673271	226673630	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	1618	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
226215	chr9	65737401	65738400	+	0	NA	exon (NM_199244, exon 1 of 1)	exon (NM_199244, exon 1 of 1)	754	NM_199244	349334		NM_199244	ENSG00000184659	FOXD4L4	FOXD4L2|FOXD4b|bA460E7.2	forkhead box D4 like 4	protein-coding
127068	chr2	37414421	37414980	+	0	NA	Intergenic	Intergenic	70070	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
179061	chr4	165537021	165537280	+	0	NA	Intergenic	Intergenic	-147489	NR_121676	101928151		NR_121676	ENSG00000249500	LINC01179	-	long intergenic non-protein coding RNA 1179	ncRNA
188082	chr5	150161351	150161980	+	0	NA	Intergenic	Intergenic	-5113	NM_001804	1044		NM_001804	ENSG00000113722	CDX1	-	caudal type homeobox 1	protein-coding
210126	chr7	98202451	98203800	+	0	NA	intron (NM_014916, intron 11 of 13)	L1MEf|LINE|L1	-8314	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
149892	chr21	36071471	36071630	+	0	NA	intron (NM_001757, intron 2 of 2)	intron (NM_001757, intron 2 of 2)	1526	NM_001286789	873		NM_001757	ENSG00000159228	CBR1	CBR|PG-9-KR|SDR21C1|hCBR1	carbonyl reductase 1	protein-coding
196352	chr6	43222421	43223080	+	0	NA	intron (NM_015089, intron 37 of 40)	intron (NM_015089, intron 37 of 40)	6731	NM_199184	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
110620	chr19	2201671	2202030	+	0	NA	intron (NM_032482, intron 8 of 27)	intron (NM_032482, intron 8 of 27)	32299	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
183733	chr5	81147851	81148400	+	0	NA	intron (NM_006909, intron 17 of 26)	MIRc|SINE|MIR	-85195	NM_001099736	1160		NM_001825	ENSG00000131730	CKMT2	SMTCK	creatine kinase, mitochondrial 2	protein-coding
195017	chr6	35465971	35466330	+	0	NA	intron (NM_021922, intron 9 of 9)	(CTC)n|Simple_repeat|Simple_repeat	-2251	NM_007104	4736		NM_007104	ENSG00000198755	RPL10A	CSA19|Csa-19|L10A|NEDD6|uL1	ribosomal protein L10a	protein-coding
234392	chrX	16603751	16604480	+	0	NA	intron (NM_175859, intron 17 of 18)	intron (NM_175859, intron 17 of 18)	22970	NR_039762	100616428		NR_039762	ENSG00000265144	MIR548AM	-	microRNA 548am	ncRNA
64795	chr14	34865901	34866600	+	0	NA	intron (NM_013448, intron 2 of 26)	AluJb|SINE|Alu	-7941	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
42775	chr11	72751801	72753730	+	0	NA	promoter-TSS (NM_001040118)	promoter-TSS (NM_001040118)	-376	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
173658	chr4	13626721	13628130	+	0	NA	promoter-TSS (NR_049814)	promoter-TSS (NR_049814)	300	NM_148894	259282		NM_148894	ENSG00000038219	BOD1L1	BOD1L|FAM44A	biorientation of chromosomes in cell division 1 like 1	protein-coding
38284	chr11	43314071	43314230	+	0	NA	intron (NM_001142931, intron 1 of 12)	intron (NM_001142931, intron 1 of 12)	2154	NR_024625	8539		NM_006595	ENSG00000166181	API5	AAC-11|AAC11	apoptosis inhibitor 5	protein-coding
145647	chr20	44896351	44897300	+	0	NA	intron (NM_003404, intron 2 of 6)	intron (NM_003404, intron 2 of 6)	11120	NM_003404	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
92059	chr17	7507771	7508480	+	0	NA	intron (NM_000937, intron 19 of 29)	intron (NM_000937, intron 19 of 29)	23759	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
90691	chr17	1737171	1737330	+	0	NA	intron (NM_001163809, intron 9 of 9)	intron (NM_001163809, intron 9 of 9)	-5621	NM_000934	5345		NM_000934	ENSG00000167711	SERPINF2	A2AP|AAP|ALPHA-2-PI|API|PLI|alpha2AP	serpin family F member 2	protein-coding
40909	chr11	65184271	65184430	+	0	NA	intron (NM_001198868, intron 4 of 21)	CpG	2422	NM_005186	823		NM_005186	ENSG00000014216	CAPN1	CANP|CANP1|CANPL1|SPG76|muCANP|muCL	calpain 1	protein-coding
42614	chr11	72183351	72183680	+	0	NA	Intergenic	Intergenic	-6194	NM_016724	2348		NM_000802	ENSG00000110195	FOLR1	FBP|FOLR|FRalpha|NCFTD	folate receptor alpha	protein-coding
5138	chr1	24897001	24897500	+	0	NA	Intergenic	Intergenic	22166	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
83582	chr16	28148921	28150430	+	0	NA	intron (NM_001270940, intron 9 of 24)	Tigger3a|DNA|TcMar-Tigger	62290	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
165201	chr3	72749771	72750130	+	0	NA	3' UTR (NM_018130, exon 11 of 11)	3' UTR (NM_018130, exon 11 of 11)	-85701	NR_135531	105377162		NR_135531		LOC105377162	-	uncharacterized LOC105377162	ncRNA
183634	chr5	80237021	80237480	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	18798	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
83318	chr16	24663801	24664080	+	0	NA	non-coding (NR_122072, exon 3 of 3)	non-coding (NR_122072, exon 3 of 3)	7122	NR_122072	400511		NR_122072	ENSG00000224310	LINC01567	LOCCS	long intergenic non-protein coding RNA 1567	ncRNA
67022	chr14	67531501	67531700	+	0	NA	intron (NM_001348546, intron 1 of 2)	intron (NM_001348546, intron 1 of 2)	-1690	NM_020715	57475		NM_020715	ENSG00000054690	PLEKHH1	-	pleckstrin homology, MyTH4 and FERM domain containing H1	protein-coding
156343	chr22	40764601	40765080	+	0	NA	Intergenic	Intergenic	49118	NR_039923	100616283		NR_039923	ENSG00000266594	MIR4766	mir-4766	microRNA 4766	ncRNA
128430	chr2	55416751	55416850	+	0	NA	intron (NM_018084, intron 2 of 31)	intron (NM_018084, intron 2 of 31)	3056	NM_018084	55704		NM_018084	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL	coiled-coil domain containing 88A	protein-coding
173908	chr4	25223751	25224050	+	0	NA	Intergenic	LTR76|LTR|ERV1	-10133	NR_144633	55300		NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
64760	chr14	34570301	34570700	+	0	NA	intron (NR_159357, intron 10 of 12)	AluSg7|SINE|Alu	-14111	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
17380	chr1	156589901	156590300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1676	NM_144772	128240		NM_144772	ENSG00000163382	NAXE	AIBP|APOA1BP|PEBEL|YJEFN1	NAD(P)HX epimerase	protein-coding
71244	chr14	105187101	105187550	+	0	NA	Intergenic	Intergenic	-6002	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
150458	chr21	42503471	42504000	+	0	NA	intron (NM_018964, intron 2 of 20)	intron (NM_018964, intron 2 of 20)	4113	NM_018964	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
12376	chr1	101257601	101258750	+	0	NA	Intergenic	Intergenic	21156	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
59886	chr13	30690251	30690950	+	0	NA	Intergenic	Intergenic	-22878	NM_001204406	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
3782	chr1	16698971	16699130	+	0	NA	intron (NR_026567, intron 8 of 10)	intron (NR_026567, intron 8 of 10)	17795	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
93535	chr17	19044651	19044950	+	0	NA	intron (NM_001330148, intron 1 of 3)	L2a|LINE|L2	2157	NM_006613	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
100892	chr17	64392121	64392550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1475	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
156227	chr22	40368151	40369130	+	0	NA	3' UTR (NM_000026, exon 13 of 13)	3' UTR (NM_000026, exon 13 of 13)	-1954	NM_001350046	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
60119	chr13	38813451	38813550	+	0	NA	intron (NM_207361, intron 6 of 23)	(TC)n|Simple_repeat|Simple_repeat	14091	NR_146963	100874073		NR_146963		FREM2-AS1	-	FREM2 antisense RNA 1	ncRNA
46747	chr11	129270601	129271000	+	0	NA	intron (NR_145484, intron 1 of 1)	L2a|LINE|L2	8718	NM_001378025	9743		NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
171897	chr4	799021	799500	+	0	NA	intron (NM_006651, intron 2 of 3)	MER21A|LTR|ERVL	-17412	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
189875	chr5	177309251	177310130	+	0	NA	intron (NM_031300, intron 4 of 5)	MIRc|SINE|MIR	2208	NM_031300	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
6442	chr1	28238001	28238550	+	0	NA	TTS (NM_178191)	TTS (NM_178191)	2151	NM_016311	93974		NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
197694	chr6	85645201	85645980	+	0	NA	Intergenic	L2|LINE|L2	-2668	NM_001159673	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
189340	chr5	172178301	172180130	+	0	NA	intron (NM_005990, intron 1 of 18)	MIRc|SINE|MIR	9009	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
27093	chr10	27446121	27446700	+	0	NA	Intergenic	Intergenic	-32042	NM_001034842	374308		NM_001034842	ENSG00000182077	PTCHD3	PTR	patched domain containing 3 (gene/pseudogene)	protein-coding
221484	chr8	124490201	124490600	+	0	NA	intron (NM_032026, intron 11 of 11)	AluSx1|SINE|Alu	15520	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
22265	chr1	212678821	212679080	+	0	NA	Intergenic	Intergenic	20890	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
201575	chr6	149331471	149331630	+	0	NA	intron (NM_015093, intron 1 of 8)	L1MC|LINE|L1	13250	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
116112	chr19	17307321	17307780	+	0	NA	TTS (NM_001382342)	TTS (NM_001382342)	1678	NM_023937	64981		NM_023937	ENSG00000130312	MRPL34	L34mt|bL34m	mitochondrial ribosomal protein L34	protein-coding
156192	chr22	40271801	40272000	+	0	NA	intron (NM_001024843, intron 8 of 23)	intron (NM_001024843, intron 8 of 23)	-74600	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
2318	chr1	9120271	9120850	+	0	NA	intron (NM_024980, intron 1 of 3)	intron (NM_024980, intron 1 of 3)	8542	NM_024980	80045		NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
173371	chr4	7870421	7870880	+	0	NA	intron (NM_001371091, intron 3 of 17)	AluJb|SINE|Alu	1658	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
50298	chr12	46388471	46388700	+	0	NA	intron (NR_125381, intron 2 of 2)	intron (NR_125381, intron 2 of 2)	4478	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
166711	chr3	120791021	120791280	+	0	NA	Intergenic	Intergenic	45207	NR_135571	101926983		NR_135570	ENSG00000243593	LINC02049	-	long intergenic non-protein coding RNA 2049	ncRNA
228414	chr9	99231771	99232000	+	0	NA	Intergenic	Intergenic	9603	NM_006808	10952		NM_006808	ENSG00000106803	SEC61B	-	SEC61 translocon subunit beta	protein-coding
74935	chr15	63745151	63745450	+	0	NA	intron (NM_003922, intron 12 of 77)	L1M1|LINE|L1	88648	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
183116	chr5	74673001	74673380	+	0	NA	intron (NM_001292004, intron 1 of 13)	intron (NM_001292004, intron 1 of 13)	-12043	NM_000521	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
79689	chr16	1271551	1272480	+	0	NA	Intergenic	Intergenic	15946	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
234143	chrX	10084851	10085980	+	0	NA	intron (NM_015691, intron 5 of 22)	L1MC5a|LINE|L1	70161	NM_015691	55841		NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
126385	chr2	27497501	27497700	+	0	NA	exon (NM_001486, exon 3 of 19)	exon (NM_001486, exon 3 of 19)	761	NM_001486	2646		NM_001486	ENSG00000084734	GCKR	FGQTL5|GKRP	glucokinase regulator	protein-coding
37701	chr11	29771251	29771350	+	0	NA	Intergenic	L1PA4|LINE|L1	152498	NR_149106	105376606		NR_149106	ENSG00000255117	LINC02546	-	long intergenic non-protein coding RNA 2546	ncRNA
140756	chr2	234492901	234493480	+	0	NA	3' UTR (NM_005737, exon 1 of 1)	3' UTR (NM_005737, exon 1 of 1)	3859	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
156049	chr22	39978671	39979630	+	0	NA	Intergenic	L1MC1|LINE|L1	-15804	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
22290	chr1	212794171	212794850	+	0	NA	intron (NM_001363590, intron 1 of 8)	AluSq2|SINE|Alu	2616	NM_001042552	128387		NM_001042552	ENSG00000203705	TATDN3	-	TatD DNase domain containing 3	protein-coding
4524	chr1	21818601	21819200	+	0	NA	intron (NM_001013693, intron 3 of 4)	L2a|LINE|L2	6635	NM_001013693	401944		NM_001013693	ENSG00000187942	LDLRAD2	-	low density lipoprotein receptor class A domain containing 2	protein-coding
207544	chr7	44837201	44838000	+	0	NA	intron (NM_201517, intron 2 of 3)	AluJb|SINE|Alu	10487	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
222808	chr8	142455851	142456880	+	0	NA	intron (NM_001702, intron 1 of 30)	intron (NM_001702, intron 1 of 30)	6716	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
195384	chr6	36734221	36734500	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	23040	NM_001376891	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
52335	chr12	54984511	54985680	+	0	NA	promoter-TSS (NR_147062)	promoter-TSS (NR_147062)	-333	NM_001136030	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
53855	chr12	69739501	69740200	+	0	NA	non-coding (NR_103520, exon 1 of 9)	non-coding (NR_103520, exon 1 of 9)	469	NM_175625	117177		NM_022456	ENSG00000127328	RAB3IP	RABIN3|RABIN8	RAB3A interacting protein	protein-coding
74457	chr15	59685771	59686600	+	0	NA	intron (NM_001368061, intron 1 of 7)	intron (NM_001368061, intron 1 of 7)	2741	NM_001320675	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
201462	chr6	148739851	148740230	+	0	NA	Intergenic	MIRc|SINE|MIR	-6990	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
225705	chr9	36580071	36580630	+	0	NA	intron (NM_001256693, intron 1 of 15)	AluSq2|SINE|Alu	7455	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
134993	chr2	152715201	152715400	+	0	NA	intron (NM_001365602, intron 2 of 26)	intron (NM_001365602, intron 2 of 26)	2161	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
7906	chr1	37458571	37459080	+	0	NA	intron (NR_038842, intron 1 of 2)	MER30|DNA|hAT-Charlie	15618	NR_038842	728431		NR_038842	ENSG00000233621	LITATS1	LINC01137|ZC3H12A-DT	lncRNA induced by TGF-beta and antagonizes TGF-beta signaling 1	ncRNA
153533	chr22	26573221	26573680	+	0	NA	intron (NM_001362923, intron 1 of 7)	intron (NM_001362923, intron 1 of 7)	-8109	NM_001008566	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
197793	chr6	87686621	87687300	+	0	NA	intron (NM_018064, intron 1 of 4)	AluSx1|SINE|Alu	15273	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
237845	chrX	130097421	130098400	+	0	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	12587	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
30493	chr10	79286001	79287200	+	0	NA	intron (NM_020338, intron 8 of 24)	intron (NM_020338, intron 8 of 24)	-60869	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
51303	chr12	51262701	51263350	+	0	NA	intron (NM_001031628, intron 2 of 3)	MIRb|SINE|MIR	7185	NM_001033873	57228		NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
237370	chrX	119004821	119005180	+	0	NA	intron (NM_001031855, intron 5 of 10)	MIRc|SINE|MIR	28668	NM_001289109	79836		NM_024778	ENSG00000175556	LONRF3	RNF127	LON peptidase N-terminal domain and ring finger 3	protein-coding
136440	chr2	176814671	176815030	+	0	NA	Intergenic	Intergenic	177096	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
97248	chr17	42994521	42994980	+	0	NA	3' UTR (NM_001321381, exon 6 of 6)	3' UTR (NM_001321381, exon 6 of 6)	-3523	NM_001349921	6155		NM_000988	ENSG00000131469	RPL27	DBA16|L27|eL27	ribosomal protein L27	protein-coding
127096	chr2	37616901	37617180	+	0	NA	Intergenic	Intergenic	54602	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
152757	chr22	21753871	21754030	+	0	NA	Intergenic	Intergenic	-18156	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
6516	chr1	28532751	28533450	+	0	NA	intron (NM_001048195, intron 5 of 10)	AluSp|SINE|Alu	14874	NM_001048194	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
36509	chr11	6413371	6414230	+	0	NA	intron (NM_145689, intron 1 of 13)	intron (NM_145689, intron 1 of 13)	5294	NM_001164	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
43813	chr11	86598451	86598550	+	0	NA	intron (NR_147828, intron 2 of 14)	L1PA3|LINE|L1	73698	NR_147831	10873		NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
44663	chr11	110433651	110434480	+	0	NA	intron (NM_004109, intron 1 of 3)	intron (NM_004109, intron 1 of 3)	4117	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
70035	chr14	100104701	100105100	+	0	NA	intron (NM_016337, intron 3 of 13)	intron (NM_016337, intron 3 of 13)	4614	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
171436	chr3	196278071	196278230	+	0	NA	intron (NM_001312673, intron 1 of 8)	intron (NM_001312673, intron 1 of 8)	9576	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
231874	chr9	132988271	132988500	+	0	NA	exon (NM_004188, exon 8 of 11)	exon (NM_004188, exon 8 of 11)	9109	NM_001377305	8328		NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding
125137	chr2	9949001	9949200	+	0	NA	Intergenic	Intergenic	-2593	NM_198182	29841		NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
108873	chr18	79389971	79390330	+	0	NA	Intergenic	L1M4b|LINE|L1	-5780	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
195230	chr6	36201471	36202230	+	0	NA	intron (NM_015695, intron 2 of 12)	intron (NM_015695, intron 2 of 12)	5106	NM_015695	27154		NM_015695	ENSG00000096070	BRPF3	-	bromodomain and PHD finger containing 3	protein-coding
109756	chr19	1117601	1118080	+	0	NA	intron (NM_001100122, intron 11 of 28).2	intron (NM_001100122, intron 11 of 28).2	13190	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
141554	chr2	241503971	241504400	+	0	NA	intron (NM_001282305, intron 1 of 10)	intron (NM_001282305, intron 1 of 10)	4160	NM_001271978	10494		NM_006374	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
233894	chrX	1595721	1596050	+	0	NA	intron (NM_004043, intron 1 of 9)	(GT)n|Simple_repeat|Simple_repeat	430	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
216960	chr8	23003671	23004030	+	0	NA	intron (NM_015178, intron 1 of 9)	intron (NM_015178, intron 1 of 9)	4302	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
100725	chr17	63888801	63889550	+	0	NA	Intergenic	Intergenic	-7231	NM_022557	2689		NM_002059	ENSG00000136487	GH2	GH-V|GHB2|GHL|GHV|hGH-V	growth hormone 2	protein-coding
96623	chr17	40564001	40564800	+	0	NA	intron (NM_001838, intron 1 of 2)	intron (NM_001838, intron 1 of 2)	1072	NM_001838	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
217275	chr8	27347951	27348850	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	22836	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
59201	chr13	22214271	22214430	+	0	NA	intron (NR_103810, intron 1 of 1)	intron (NR_103810, intron 1 of 1)	4065	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
169035	chr3	152695121	152695800	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-139671	NM_002563	5028		NM_002563	ENSG00000169860	P2RY1	P2Y1|SARCC	purinergic receptor P2Y1	protein-coding
192593	chr6	25987821	25988680	+	0	NA	3' UTR (NM_006355, exon 8 of 8)	3' UTR (NM_006355, exon 8 of 8)	25448	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
54264	chr12	88037171	88037630	+	0	NA	intron (NM_001009894, intron 1 of 6)	intron (NM_001009894, intron 1 of 6)	1864	NM_001009894	91298		NM_001009894	ENSG00000133641	RLIG1	C12orf29|Rnl	RNA 5'-phosphate and 3'-OH ligase 1	protein-coding
110402	chr19	1949821	1950230	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	4524	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
122238	chr19	49009201	49009400	+	0	NA	promoter-TSS (NR_106856)	promoter-TSS (NR_106856)	-606	NR_106856	102466738		NR_106856	ENSG00000273898	MIR6798	hsa-mir-6798	microRNA 6798	ncRNA
15536	chr1	150531721	150531980	+	0	NA	Intergenic	MER89|LTR|ERV1	16093	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
168691	chr3	150611501	150612430	+	0	NA	intron (NM_016275, intron 1 of 5)	intron (NM_016275, intron 1 of 5)	8644	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
198469	chr6	106182271	106182830	+	0	NA	Intergenic	Intergenic	83609	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
124190	chr19	56252571	56253130	+	0	NA	intron (NM_001322061, intron 2 of 6)	intron (NM_001322061, intron 2 of 6)	-19898	NM_001354658	100506374		NM_001354658	ENSG00000267710	EDDM13	-	epididymal protein 13	protein-coding
211244	chr7	102655551	102655850	+	0	NA	intron (NM_001166339, intron 4 of 8).2	AluSz6|SINE|Alu	5375	NM_001031618	441273		NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1|SPDYB2L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
10061	chr1	58739901	58740350	+	0	NA	Intergenic	Intergenic	-40063	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
170208	chr3	184138021	184138400	+	0	NA	exon (NM_003907, exon 5 of 16)	exon (NM_003907, exon 5 of 16)	2852	NM_003907	8893		NM_003907	ENSG00000145191	EIF2B5	CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM|VWM5	eukaryotic translation initiation factor 2B subunit epsilon	protein-coding
194297	chr6	32745751	32746050	+	0	NA	exon (NM_020056, exon 3 of 5).3	exon (NM_020056, exon 3 of 5).3	4079	NR_039668	100616218		NR_039668	ENSG00000263649	MIR3135B	-	microRNA 3135b	ncRNA
131826	chr2	98648871	98649830	+	0	NA	intron (NM_001160154, intron 5 of 12)	intron (NM_001160154, intron 5 of 12)	14123	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
67392	chr14	69787201	69787400	+	0	NA	intron (NM_003049, intron 1 of 4)	intron (NM_003049, intron 1 of 4)	9941	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
147628	chr20	62147801	62148000	+	0	NA	intron (NM_198935, intron 1 of 10)	intron (NM_198935, intron 1 of 10)	4131	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
224696	chr9	21357401	21358580	+	0	NA	Intergenic	Intergenic	-7103	NM_021002	3443		NM_021002	ENSG00000120235	IFNA6	IFN-alphaK	interferon alpha 6	protein-coding
40136	chr11	62838921	62839900	+	0	NA	exon (NM_018093, exon 3 of 12)	exon (NM_018093, exon 3 of 12)	180	NM_001369450	54663		NM_018093	ENSG00000133316	WDR74	Nsa1	WD repeat domain 74	protein-coding
218329	chr8	42798801	42799000	+	0	NA	Intergenic	AluJr|SINE|Alu	-30114	NM_001199279	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
157557	chr22	45752451	45752580	+	0	NA	intron (NM_013236, intron 9 of 11)	intron (NM_013236, intron 9 of 11)	-8009	NR_039919	100616253		NR_039919	ENSG00000264160	MIR4762	-	microRNA 4762	ncRNA
202643	chr6	158764551	158766200	+	0	NA	promoter-TSS (NR_037482)	promoter-TSS (NR_037482)	-622	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
136054	chr2	172674601	172675000	+	0	NA	Intergenic	Intergenic	-61045	NM_001375872	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
16363	chr1	154340171	154340930	+	0	NA	intron (NM_001367934, intron 11 of 26)	intron (NM_001367934, intron 11 of 26)	11752	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
149725	chr21	34133101	34133300	+	0	NA	intron (NM_032476, intron 2 of 2)	intron (NM_032476, intron 2 of 2)	-47477	NR_027267	114036		NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
111047	chr19	3101221	3101480	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	6988	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
226493	chr9	71764721	71765230	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	3538	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
58555	chr12	132323271	132323680	+	0	NA	intron (NM_001122636, intron 1 of 10)	intron (NM_001122636, intron 1 of 10)	6114	NM_001122636	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
24334	chr1	239405421	239405680	+	0	NA	intron (NM_001375981, intron 1 of 5)	intron (NM_001375981, intron 1 of 5)	18982	NM_001375982	1131		NM_000740	ENSG00000133019	CHRM3	EGBRS|HM3|PBS|m3AChR	cholinergic receptor muscarinic 3	protein-coding
224940	chr9	33031201	33031700	+	0	NA	intron (NM_001314039, intron 4 of 7)	AluSz|SINE|Alu	6177	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
143015	chr20	20717621	20717950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5141	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
230428	chr9	128150001	128150200	+	0	NA	intron (NM_005564, intron 1 of 6)	intron (NM_005564, intron 1 of 6)	647	NM_005564	3934		NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL|p25	lipocalin 2	protein-coding
171391	chr3	196181501	196182780	+	0	NA	Intergenic	Intergenic	29260	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
23078	chr1	226648321	226648580	+	0	NA	intron (NM_002221, intron 3 of 7)	intron (NM_002221, intron 3 of 7)	26618	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
193645	chr6	30830551	30831250	+	0	NA	promoter-TSS (NR_130726)	promoter-TSS (NR_130726)	-241	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
106259	chr18	12373301	12374100	+	0	NA	intron (NM_006796, intron 1 of 16)	MSTB2|LTR|ERVL-MaLR	3527	NM_006796	10939		NM_006796	ENSG00000141385	AFG3L2	OPA12|SCA28|SPAX5	AFG3 like matrix AAA peptidase subunit 2	protein-coding
61439	chr13	51863021	51863280	+	0	NA	intron (NM_031290, intron 1 of 1)	intron (NM_031290, intron 1 of 1)	1181	NM_031290	83446		NM_031290	ENSG00000123171	CCDC70	-	coiled-coil domain containing 70	protein-coding
127404	chr2	42089201	42089680	+	0	NA	Intergenic	Intergenic	41419	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
65431	chr14	51239401	51240930	+	0	NA	promoter-TSS (NM_030755)	promoter-TSS (NM_030755)	-82	NM_030755	81542		NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
117451	chr19	19681001	19681200	+	0	NA	3' UTR (NM_033204, exon 4 of 4)	3' UTR (NM_033204, exon 4 of 4)	12261	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
236257	chrX	65862551	65862930	+	0	NA	Intergenic	Intergenic	-156130	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
14961	chr1	147930151	147931430	+	0	NA	intron (NM_016334, intron 1 of 13)	intron (NM_016334, intron 1 of 13)	2370	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
48513	chr12	9940551	9940650	+	0	NA	intron (NR_104634, intron 2 of 4)	intron (NR_104634, intron 2 of 4)	2895	NR_104634	100506159		NR_104634	ENSG00000225231	LINC02470	-	long intergenic non-protein coding RNA 2470	ncRNA
166442	chr3	113927571	113927730	+	0	NA	intron (NM_017577, intron 10 of 17)	L1HS|LINE|L1	-20251	NM_001363952	254887		NM_173570	ENSG00000184307	ZDHHC23	DHHC-23|NIDD	zinc finger DHHC-type palmitoyltransferase 23	protein-coding
202744	chr6	159017921	159018580	+	0	NA	Intergenic	Intergenic	-18048	NM_031924	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
203595	chr7	929571	930830	+	0	NA	intron (NM_006869, intron 2 of 10)	intron (NM_006869, intron 2 of 10)	-2984	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
8771	chr1	42765721	42766190	+	0	NA	intron (NM_001146289, intron 1 of 14)	intron (NM_001146289, intron 1 of 14)	1073	NM_022356	64175		NM_022356	ENSG00000117385	P3H1	GROS1|LEPRE1|OI8	prolyl 3-hydroxylase 1	protein-coding
19904	chr1	184033651	184034150	+	0	NA	intron (NM_001303421, intron 1 of 11)	intron (NM_001303421, intron 1 of 11)	3828	NM_015101	23127		NM_015101	ENSG00000198756	COLGALT2	C1orf17|ColGalT 2|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
173877	chr4	24557601	24558300	+	0	NA	intron (NM_001358, intron 3 of 13)	Kanga1c|DNA|TcMar-Tc2	26604	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
129252	chr2	68372601	68373180	+	0	NA	intron (NM_002664, intron 1 of 8)	MIR3|SINE|MIR	7608	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
229561	chr9	123034171	123034530	+	0	NA	5' UTR (NM_005294, exon 2 of 2)	5' UTR (NM_005294, exon 2 of 2)	683	NM_005294	2844		NM_005294	ENSG00000188394	GPR21	-	G protein-coupled receptor 21	protein-coding
176819	chr4	102552651	102553150	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-50414	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
35784	chr11	2169671	2170030	+	0	NA	exon (NM_199293, exon 3 of 14)	exon (NM_199293, exon 3 of 14)	1965	NM_199293	7054		NM_000360	ENSG00000180176	TH	DYT14|DYT5b|TYH	tyrosine hydroxylase	protein-coding
235548	chrX	47244071	47244430	+	0	NA	intron (NM_001371072, intron 13 of 20)	AluSx|SINE|Alu	11241	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
73370	chr15	42495051	42496080	+	0	NA	promoter-TSS (NM_003825)	promoter-TSS (NM_003825)	-69	NM_003825	8773		NM_003825	ENSG00000092531	SNAP23	HsT17016|SNAP-23|SNAP23A|SNAP23B	synaptosome associated protein 23	protein-coding
97951	chr17	45228391	45230550	+	0	NA	intron (NM_005892, intron 1 of 26)	intron (NM_005892, intron 1 of 26)	7585	NM_005892	752		NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin like 1	protein-coding
111229	chr19	3510371	3510730	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	4239	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
87543	chr16	71910951	71911630	+	0	NA	intron (NM_001270979, intron 1 of 5)	intron (NM_001270979, intron 1 of 5)	15759	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
57010	chr12	120580851	120582080	+	0	NA	promoter-TSS (NM_198202)	promoter-TSS (NM_198202)	-63	NM_015918	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
30075	chr10	73878351	73878950	+	0	NA	Intergenic	AluJr|SINE|Alu	-4059	NM_172171	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
4874	chr1	23775371	23776100	+	0	NA	intron (NR_038280, intron 1 of 3)	intron (NR_038280, intron 1 of 3)	2562	NR_038280	100506963		NR_038280	ENSG00000236810	ELOA-AS1	TCEB3-AS1	ELOA antisense RNA 1	ncRNA
125269	chr2	10444171	10444800	+	0	NA	exon (NM_001287189, exon 4 of 12)	exon (NM_001287189, exon 4 of 12)	2364	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
60317	chr13	40656651	40656950	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	9841	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
36421	chr11	4103721	4104180	+	0	NA	intron (NM_001318064, intron 2 of 17)	AluJb|SINE|Alu	9151	NM_001033	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
86036	chr16	57542121	57543230	+	0	NA	promoter-TSS (NM_001304376)	promoter-TSS (NM_001304376)	32	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
42255	chr11	68125621	68125930	+	0	NA	Intergenic	AluSq|SINE|Alu	-4387	NM_001376220	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
118344	chr19	35634321	35634580	+	0	NA	intron (NM_024321, intron 8 of 9)	intron (NM_024321, intron 8 of 9)	5414	NM_024321	79171		NM_024321	ENSG00000126254	RBM42	-	RNA binding motif protein 42	protein-coding
76211	chr15	73873901	73874200	+	0	NA	intron (NM_001286434, intron 1 of 9)	intron (NM_001286434, intron 1 of 9)	486	NM_153356	161514		NM_153356	ENSG00000167139	TBC1D21	MgcRabGAP	TBC1 domain family member 21	protein-coding
55575	chr12	106282171	106282730	+	0	NA	Intergenic	Intergenic	-20283	NM_001286262	255394		NM_152772	ENSG00000166046	TCP11L2	-	t-complex 11 like 2	protein-coding
66696	chr14	64209371	64209730	+	0	NA	exon (NM_182914, exon 102 of 116)	exon (NM_182914, exon 102 of 116)	-4594	NM_182913	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
222977	chr8	143210421	143210680	+	0	NA	Intergenic	Intergenic	-2668	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
43449	chr11	77833401	77833600	+	0	NA	intron (NM_001316960, intron 2 of 4)	MER1A|DNA|hAT-Charlie	-7638	NM_001363564	28971		NM_024684	ENSG00000087884	AAMDC	C11orf67|CK067|PTD015	adipogenesis associated Mth938 domain containing	protein-coding
82430	chr16	16314001	16314200	+	0	NA	Intergenic	Intergenic	-2122	NR_146336	110006323		NR_146336		PKD1P4-NPIPA8	-	PKD1P4-NPIPA8 readthrough	pseudo
155675	chr22	39039071	39039530	+	0	NA	Intergenic	LTR7C|LTR|ERV1	-1564	NM_145298	200316		NM_145298	ENSG00000128394	APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	apolipoprotein B mRNA editing enzyme catalytic subunit 3F	protein-coding
216648	chr8	22123301	22123500	+	0	NA	intron (NM_018411, intron 6 of 17)	intron (NM_018411, intron 6 of 17)	7610	NM_005144	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
135082	chr2	156896371	156896530	+	0	NA	Intergenic	Tigger16a|DNA|TcMar-Tigger	-361255	NM_014568	11227		NM_014568	ENSG00000136542	GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
52213	chr12	54378751	54379180	+	0	NA	intron (NM_001290002, intron 3 of 8)	CpG	5768	NM_001290001	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
1101	chr1	2041701	2042350	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	8045	NR_135509	105378591		NR_135509	ENSG00000226969	PRKCZ-DT	-	PRKCZ divergent transcript	ncRNA
127172	chr2	38315721	38316050	+	0	NA	intron (NM_001135673, intron 4 of 12)	intron (NM_001135673, intron 4 of 12)	60645	NM_001330460	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
232727	chr9	136618451	136619050	+	0	NA	Intergenic	Intergenic	-1569	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
27323	chr10	30525021	30526430	+	0	NA	Intergenic	L1MEd|LINE|L1	91079	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
156076	chr22	40042201	40042600	+	0	NA	TTS (NR_163486)	TTS (NR_163486)	2130	NR_163486	114841040		NR_163486	ENSG00000261202	TNRC6B-DT	-	TNRC6B divergent transcript	ncRNA
102729	chr17	76203501	76203900	+	0	NA	intron (NM_052916, intron 2 of 18)	AluSq2|SINE|Alu	36793	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
194122	chr6	31965001	31965400	+	0	NA	intron (NM_006929, intron 17 of 27).3	L1ME5|LINE|L1	-5975	NR_026717	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
186147	chr5	134167451	134168050	+	0	NA	intron (NM_170679, intron 2 of 5)	AluY|SINE|Alu	9200	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
32418	chr10	102474821	102475180	+	0	NA	intron (NM_024789, intron 9 of 9)	L2a|LINE|L2	13605	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
219155	chr8	66438471	66439650	+	0	NA	intron (NM_144650, intron 1 of 13)	CpG	6556	NM_144650	137872		NM_144650	ENSG00000147576	ADHFE1	ADH8|HMFT2263|HOT	alcohol dehydrogenase iron containing 1	protein-coding
34975	chr11	501551	502750	+	0	NA	exon (NM_203387, exon 3 of 11)	exon (NM_203387, exon 3 of 11)	4618	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
72228	chr15	30326251	30326350	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	46846	NR_046324	1139		NM_000746	ENSG00000175344	CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor nicotinic alpha 7 subunit	protein-coding
94205	chr17	28597651	28597750	+	0	NA	intron (NM_006461, intron 2 of 23)	intron (NM_006461, intron 2 of 23)	1325	NM_006461	10615		NM_006461	ENSG00000076382	SPAG5	DEEPEST|MAP126|hMAP126	sperm associated antigen 5	protein-coding
187757	chr5	144188851	144188950	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	-16491	NM_001370487	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
88882	chr16	87712471	87712630	+	0	NA	intron (NM_001351937, intron 8 of 11)	intron (NM_001351937, intron 8 of 11)	53436	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
93114	chr17	17690101	17690850	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	9017	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
27475	chr10	32043521	32044380	+	0	NA	intron (NM_004521, intron 2 of 25)	intron (NM_004521, intron 2 of 25)	12475	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
224668	chr9	21091601	21092380	+	0	NA	Intergenic	MER54B|LTR|ERVL	-14048	NM_002176	3456		NM_002176	ENSG00000171855	IFNB1	IFB|IFF|IFN-beta|IFNB	interferon beta 1	protein-coding
24653	chr1	246928551	246928650	+	0	NA	intron (NR_136586, intron 1 of 36)	intron (NR_136586, intron 1 of 36)	2758	NM_015446	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
144936	chr20	37013801	37014000	+	0	NA	intron (NM_183404, intron 19 of 20)	intron (NM_183404, intron 19 of 20)	-62192	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
235989	chrX	54043721	54045100	+	0	NA	promoter-TSS (NM_015107)	promoter-TSS (NM_015107)	63	NM_015107	23133		NM_015107	ENSG00000172943	PHF8	JHDM1F|KDM7B|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
167973	chr3	136698851	136698950	+	0	NA	intron (NM_005862, intron 1 of 33)	L1PB2|LINE|L1	53478	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
110174	chr19	1661071	1661600	+	0	NA	Intergenic	Intergenic	-8720	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
105987	chr18	5964901	5965300	+	0	NA	intron (NM_001365769, intron 15 of 16)	intron (NM_001365769, intron 15 of 16)	-69146	NM_001080209	645369		NM_001080209	ENSG00000206432	TMEM200C	TTMA	transmembrane protein 200C	protein-coding
218023	chr8	38721251	38722100	+	0	NA	Intergenic	Intergenic	-6907	NM_001352792	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
75482	chr15	66254451	66255500	+	0	NA	Intergenic	Intergenic	-1225	NM_001385030	84465		NM_032445	ENSG00000157890	MEGF11	-	multiple EGF like domains 11	protein-coding
98835	chr17	48425671	48425830	+	0	NA	intron (NM_001075099, intron 1 of 12)	Tigger15a|DNA|TcMar-Tigger	4464	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
199285	chr6	111974201	111974400	+	0	NA	Intergenic	Intergenic	-64903	NR_149099	105377946		NR_149099		LINC02527	-	long intergenic non-protein coding RNA 2527	ncRNA
238071	chrX	136064901	136065580	+	0	NA	Intergenic	Intergenic	79805	NM_006359	10479		NM_006359	ENSG00000198689	SLC9A6	MRSA|MRXSCH|NHE6	solute carrier family 9 member A6	protein-coding
99608	chr17	50546621	50548780	+	0	NA	5' UTR (NM_001258373, exon 2 of 17)	5' UTR (NM_001258373, exon 2 of 17)	526	NM_022827	64847		NM_022827	ENSG00000006282	SPATA20	HEL-S-98|SSP411|Tisp78	spermatogenesis associated 20	protein-coding
26085	chr10	13118651	13118750	+	0	NA	intron (NM_001008212, intron 6 of 14)	intron (NM_001008212, intron 6 of 14)	18537	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
148615	chr21	5506621	5506880	+	0	NA	Intergenic	Intergenic	-46887	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
87645	chr16	74565371	74565850	+	0	NA	intron (NM_001145667, intron 1 of 25)	MER57B2|LTR|ERV1	41504	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
136115	chr2	173940621	173940880	+	0	NA	intron (NM_001172712, intron 4 of 6)	L2a|LINE|L2	23130	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
187000	chr5	139744501	139744700	+	0	NA	intron (NR_105053, intron 2 of 2)	intron (NR_105053, intron 2 of 2)	1623	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
12548	chr1	108657751	108658250	+	0	NA	intron (NM_144584, intron 2 of 7)	(AC)n|Simple_repeat|Simple_repeat	3093	NM_001102592	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
141418	chr2	240978851	240979680	+	0	NA	intron (NM_001351305, intron 27 of 31)	intron (NM_001351305, intron 27 of 31)	-11814	NR_033841	200772		NR_033841	ENSG00000233392	UICLM	CROCC2-AS1	up-regulated in colorectal cancer liver metastasis	ncRNA
111768	chr19	4396071	4396430	+	0	NA	intron (NM_001199943, intron 1 of 8)	AluSq2|SINE|Alu	4297	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
215499	chr7	158594921	158595380	+	0	NA	Intergenic	(GGTGGT)n|Simple_repeat|Simple_repeat	3534	NR_049893	100847032		NR_049893	ENSG00000265598	MIR5707	-	microRNA 5707	ncRNA
37537	chr11	18669071	18669830	+	0	NA	Intergenic	LTR8|LTR|ERV1	-29329	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
203175	chr6	167116851	167117350	+	0	NA	intron (NM_004367, intron 1 of 2)	intron (NM_004367, intron 1 of 2)	5293	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
29831	chr10	72326401	72327430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	28004	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
73471	chr15	43513021	43513280	+	0	NA	Intergenic	AluSp|SINE|Alu	-2510	NM_005657	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
198045	chr6	90189051	90189350	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	107643	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
125728	chr2	20649221	20649680	+	0	NA	intron (NM_022460, intron 1 of 6)	L2a|LINE|L2	1648	NM_022460	64342		NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
219387	chr8	70471371	70472000	+	0	NA	non-coding (NR_110653, exon 1 of 4)	non-coding (NR_110653, exon 1 of 4)	551	NR_110653	101926892		NR_110653	ENSG00000253967	LINC03020	-	long intergenic non-protein coding RNA 3020	ncRNA
188586	chr5	157158721	157160430	+	0	NA	Intergenic	Intergenic	6689	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
79791	chr16	1388521	1389230	+	0	NA	intron (NM_001372107, intron 9 of 14)	intron (NM_001372107, intron 9 of 14)	-9223	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
45754	chr11	119210221	119210480	+	0	NA	intron (NM_005188, intron 1 of 15)	AluJb|SINE|Alu	4011	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
220844	chr8	103023751	103024050	+	0	NA	intron (NM_001695, intron 1 of 12)	intron (NM_001695, intron 1 of 12)	2817	NM_001695	528		NM_001695	ENSG00000155097	ATP6V1C1	ATP6C|ATP6D|VATC|Vma5	ATPase H+ transporting V1 subunit C1	protein-coding
14872	chr1	146448551	146449050	+	0	NA	Intergenic	MIR3|SINE|MIR	-37532	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
144005	chr20	33140721	33140980	+	0	NA	Intergenic	Intergenic	-20920	NM_001319164	140683		NM_080574	ENSG00000131050	BPIFA2	C20orf70|PSP|SPLUNC2|bA49G10.1	BPI fold containing family A member 2	protein-coding
83396	chr16	27169271	27170430	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-33676	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
181516	chr5	43034601	43035100	+	0	NA	intron (NR_104651, intron 2 of 2)	intron (NR_104651, intron 2 of 2)	5469	NM_001014279	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
28264	chr10	45726701	45728150	+	0	NA	non-coding (NR_159966, exon 2 of 33)	non-coding (NR_159966, exon 2 of 33)	159	NM_001367415	253725		NM_015262	ENSG00000172661	WASHC2C	FAM21A|FAM21C|VPEF	WASH complex subunit 2C	protein-coding
145403	chr20	41616771	41617900	+	0	NA	intron (NM_032221, intron 1 of 36)	intron (NM_032221, intron 1 of 36)	1042	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
29138	chr10	68563151	68563450	+	0	NA	intron (NM_030625, intron 1 of 11)	intron (NM_030625, intron 1 of 11)	2963	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
212897	chr7	130888671	130888900	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-11246	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
55673	chr12	107390101	107390500	+	0	NA	intron (NM_001347944, intron 1 of 14)	MIRb|SINE|MIR	69712	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
65330	chr14	50120471	50120830	+	0	NA	intron (NM_006939, intron 21 of 22)	intron (NM_006939, intron 21 of 22)	-4078	NR_049739	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
119030	chr19	38930171	38931530	+	0	NA	promoter-TSS (NM_017827).2	promoter-TSS (NM_017827).2	-87	NM_001145901	54938		NM_017827	ENSG00000104835	SARS2	SARS|SARSM|SERS|SYS|SerRS|SerRSmt|mtSerRS	seryl-tRNA synthetase 2, mitochondrial	protein-coding
141685	chr2	241808671	241809250	+	0	NA	promoter-TSS (NM_001167600)	promoter-TSS (NM_001167600)	-233	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
5219	chr1	24984951	24985830	+	0	NA	Intergenic	Intergenic	-20380	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
148488	chr20	64059071	64059230	+	0	NA	intron (NM_198723, intron 1 of 10)	AluSq|SINE|Alu	2178	NM_198723	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
209531	chr7	77126601	77127000	+	0	NA	intron (NM_020879, intron 1 of 18)	MER52C|LTR|ERV1	4185	NM_020879	57639		NM_020879	ENSG00000135205	CCDC146	MBO2	coiled-coil domain containing 146	protein-coding
129350	chr2	68762001	68762200	+	0	NA	intron (NM_001364821, intron 1 of 10)	L1MB3|LINE|L1	-12810	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
53280	chr12	64223571	64224080	+	0	NA	Intergenic	AluSz|SINE|Alu	-1529	NM_001300940	144577		NM_152440	ENSG00000174206	KICS2	C12orf66	KICSTOR subunit 2	protein-coding
181831	chr5	52910221	52910480	+	0	NA	exon (NM_181501, exon 14 of 29)	exon (NM_181501, exon 14 of 29)	-79002	NR_073107	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
209816	chr7	88062301	88062500	+	0	NA	intron (NM_021721, intron 3 of 27)	Tigger1|DNA|TcMar-Tigger	128149	NM_021723	53616		NM_004194	ENSG00000008277	ADAM22	ADAM 22|DEE61|EIEE61|MDC2	ADAM metallopeptidase domain 22	protein-coding
180613	chr5	16550301	16550600	+	0	NA	intron (NM_001034850, intron 3 of 8)	intron (NM_001034850, intron 3 of 8)	-41452	NM_019000	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
197520	chr6	75835271	75835430	+	0	NA	intron (NR_160538, intron 6 of 32)	L1PA16|LINE|L1	86111	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
113749	chr19	10498201	10499000	+	0	NA	intron (NM_012289, intron 2 of 5)	intron (NM_012289, intron 2 of 5)	4171	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
174692	chr4	42281951	42282250	+	0	NA	Intergenic	Intergenic	109168	NR_134668	105374428		NR_134668	ENSG00000250781	LOC105374428	-	uncharacterized LOC105374428	ncRNA
124570	chr2	664101	664500	+	0	NA	3' UTR (NM_152834, exon 5 of 5)	3' UTR (NM_152834, exon 5 of 5)	12404	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
154285	chr22	31665301	31666400	+	0	NA	Intergenic	AluY|SINE|Alu	-3286	NM_001326421	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
151133	chr21	44895901	44896130	+	0	NA	intron (NM_001127491, intron 8 of 15)	intron (NM_001127491, intron 8 of 15)	-22112	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
102268	chr17	75286401	75287100	+	0	NA	exon (NM_001126122, exon 2 of 7)	exon (NM_001126122, exon 2 of 7)	2683	NM_001126121	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
228558	chr9	101570121	101571350	+	0	NA	3' UTR (NM_133445, exon 9 of 9)	3' UTR (NM_133445, exon 9 of 9)	24234	NM_147180	5535		NM_147180	ENSG00000188386	PPP3R2	PPP3RL	protein phosphatase 3 regulatory subunit B, beta	protein-coding
233358	chr9	137460751	137460890	+	0	NA	intron (NM_001098537, intron 33 of 34)	intron (NM_001098537, intron 33 of 34)	-1486	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
41498	chr11	66249171	66249330	+	0	NA	Intergenic	L1MC3|LINE|L1	-8044	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
217842	chr8	37734201	37734600	+	0	NA	TTS (NR_125820)	TTS (NR_125820)	-2234	NM_001362880	11160		NM_007175	ENSG00000147475	ERLIN2	C8orf2|Erlin-2|NET32|SPFH2|SPG18|SPG18A|SPG18B	ER lipid raft associated 2	protein-coding
61915	chr13	77724101	77724680	+	0	NA	intron (NM_001242868, intron 2 of 6)	intron (NM_001242868, intron 2 of 6)	-16770	NM_001242871	122060		NM_144595	ENSG00000139737	SLAIN1	C13orf32	SLAIN motif family member 1	protein-coding
20247	chr1	193457001	193457200	+	0	NA	Intergenic	Intergenic	152355	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
163091	chr3	50102301	50102830	+	0	NA	intron (NM_005778, intron 6 of 24)	intron (NM_005778, intron 6 of 24)	-1577	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
212436	chr7	128388901	128389100	+	0	NA	intron (NR_148338, intron 2 of 2)	intron (NR_148338, intron 2 of 2)	2318	NR_148339	107986845		NR_148338		LOC107986845	-	uncharacterized LOC107986845	ncRNA
79982	chr16	1794201	1794830	+	0	NA	promoter-TSS (NM_001146006)	promoter-TSS (NM_001146006)	393	NR_027389	3483		NM_004970	ENSG00000099769	IGFALS	ACLSD|ALS	insulin like growth factor binding protein acid labile subunit	protein-coding
187281	chr5	141559371	141559530	+	0	NA	intron (NR_038333, intron 1 of 2)	intron (NR_038333, intron 1 of 2)	1139	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
235010	chrX	39891851	39891950	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	54339	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
24555	chr1	244866571	244866930	+	0	NA	Intergenic	Intergenic	-2207	NM_031844	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
41105	chr11	65539881	65541750	+	0	NA	intron (NM_001130144, intron 21 of 27)	CpG-4461	15732	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
180714	chr5	25119151	25119250	+	0	NA	Intergenic	L1PA2|LINE|L1	71456	NR_147006	105374694		NR_147006		LINC02228	HIKER	long intergenic non-protein coding RNA 2228	ncRNA
3123	chr1	12397801	12398000	+	0	NA	intron (NM_018156, intron 59 of 68)	L2a|LINE|L2	-109346	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
16803	chr1	155558121	155558800	+	0	NA	intron (NM_018489, intron 1 of 27)	AluSp|SINE|Alu	-3582	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
192173	chr6	17655871	17656350	+	0	NA	intron (NM_001278209, intron 11 of 22)	AluSz|SINE|Alu	-50020	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
143154	chr20	23996221	23996730	+	0	NA	Intergenic	Intergenic	-7696	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
135978	chr2	172108821	172109250	+	0	NA	intron (NR_126376, intron 4 of 4)	L1PA10|LINE|L1	6029	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
13587	chr1	116321721	116322230	+	0	NA	Intergenic	Intergenic	-51269	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
159122	chr3	12612921	12613830	+	0	NA	intron (NR_148942, intron 2 of 16)	intron (NR_148942, intron 2 of 16)	50133	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
207926	chr7	50711351	50711450	+	0	NA	intron (NM_001350816, intron 2 of 17)	intron (NM_001350816, intron 2 of 17)	-6099	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
42133	chr11	67632521	67633480	+	0	NA	exon (NM_005995, exon 5 of 8)	exon (NM_005995, exon 5 of 8)	-3063	NM_001243750	254552		NM_181843	ENSG00000167799	NUDT8	-	nudix hydrolase 8	protein-coding
58334	chr12	131474721	131475350	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	127565	NR_103736	338797		NM_001025466		LINC02370	-	long intergenic non-protein coding RNA 2370	ncRNA
122825	chr19	50413671	50414030	+	0	NA	exon (NM_001308632, exon 18 of 26)	exon (NM_001308632, exon 18 of 26)	-5088	NM_003121	6689		NM_003121	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor	protein-coding
124327	chr19	58182601	58184250	+	0	NA	5' UTR (NM_016325, exon 1 of 7)	5' UTR (NM_016325, exon 1 of 7)	364	NM_133502	10782		NM_016324	ENSG00000171606	ZNF274	HFB101|ZF2|ZKSCAN19|ZSCAN51	zinc finger protein 274	protein-coding
61727	chr13	74124801	74125200	+	0	NA	intron (NM_007249, intron 1 of 7)	AluSz|SINE|Alu	8929	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
96525	chr17	40344851	40345980	+	0	NA	intron (NM_001024809, intron 1 of 7)	CpG	-2279	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
110594	chr19	2173201	2173400	+	0	NA	intron (NM_032482, intron 1 of 27)	intron (NM_032482, intron 1 of 27)	9367	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
150514	chr21	42892351	42893830	+	0	NA	promoter-TSS (NM_001001503)	promoter-TSS (NM_001001503)	-219	NM_021075	4731		NM_021075	ENSG00000160194	NDUFV3	CI-10k|CI-9KD	NADH:ubiquinone oxidoreductase subunit V3	protein-coding
102296	chr17	75341071	75341430	+	0	NA	intron (NM_203506, intron 2 of 4)	AluSx|SINE|Alu	-51801	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
119217	chr19	39457151	39457650	+	0	NA	intron (NM_001111020, intron 3 of 29)	intron (NM_001111020, intron 3 of 29)	-10822	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
159297	chr3	12988651	12989000	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-1724	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
19828	chr1	182842451	182842950	+	0	NA	intron (NM_001357, intron 2 of 27)	intron (NM_001357, intron 2 of 27)	-3109	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
124243	chr19	57434821	57436080	+	0	NA	5' UTR (NM_001321953, exon 1 of 2)	5' UTR (NM_001321953, exon 1 of 2)	125	NM_001023561	388567		NM_001023561	ENSG00000186230	ZNF749	-	zinc finger protein 749	protein-coding
233671	chrX	1145621	1145880	+	0	NA	Intergenic	AluSp|SINE|Alu	66899	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
135301	chr2	160271351	160272280	+	0	NA	promoter-TSS (NR_103775)	promoter-TSS (NR_103775)	80	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
106611	chr18	22324271	22325150	+	0	NA	Intergenic	Intergenic	93205	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
21815	chr1	207320421	207322350	+	0	NA	promoter-TSS (NM_001300903)	promoter-TSS (NM_001300903)	-293	NM_001300903	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
122547	chr19	49650351	49651230	+	0	NA	intron (NM_021228, intron 6 of 10)	intron (NM_021228, intron 6 of 10)	8581	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
204638	chr7	5412551	5413680	+	0	NA	intron (NM_001080495, intron 2 of 29)	intron (NM_001080495, intron 2 of 29)	10431	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
213623	chr7	139602171	139602400	+	0	NA	intron (NM_022740, intron 10 of 14)	Tigger16a|DNA|TcMar-Tigger	78600	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
120829	chr19	45499301	45501130	+	0	NA	intron (NM_001080401, intron 2 of 4)	AluSz|SINE|Alu	1742	NM_001080401	147699		NM_178494	ENSG00000213889	PPM1N	-	protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)	protein-coding
19121	chr1	171506821	171507800	+	0	NA	intron (NM_015172, intron 1 of 33)	L1MEc|LINE|L1	21780	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
168874	chr3	152298571	152299780	+	0	NA	non-coding (NR_164862, exon 1 of 12)	non-coding (NR_164862, exon 1 of 12)	161	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
40602	chr11	64641201	64641400	+	0	NA	intron (NM_015080, intron 17 of 22)	intron (NM_015080, intron 17 of 22)	2245	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
135034	chr2	156321431	156321900	+	0	NA	Intergenic	Intergenic	11056	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
169906	chr3	177647701	177648500	+	0	NA	intron (NR_047568, intron 3 of 3)	MamGypLTR2c|LTR|Gypsy	-168765	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
58653	chr12	132520971	132522380	+	0	NA	intron (NM_001382740, intron 2 of 11)	intron (NM_001382740, intron 2 of 11)	16269	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
7175	chr1	32259851	32259950	+	0	NA	intron (NM_005356, intron 1 of 12)	L4_A_Mam|LINE|RTE-X	8635	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
3316	chr1	15409021	15411150	+	0	NA	exon (NM_024329, exon 1 of 4)	exon (NM_024329, exon 1 of 4)	197	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
116263	chr19	17647771	17647930	+	0	NA	intron (NM_001080421, intron 15 of 41)	intron (NM_001080421, intron 15 of 41)	40349	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
151716	chr22	17641521	17642550	+	0	NA	intron (NM_001270726, intron 1 of 5)	AluY|SINE|Alu	3278	NM_015367	23786		NM_015367	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2 like 13	protein-coding
111796	chr19	4451971	4452130	+	0	NA	intron (NM_025241, intron 4 of 10)	AluSx1|SINE|Alu	3251	NM_001171091	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
236781	chrX	79091571	79092180	+	0	NA	Intergenic	Intergenic	-52813	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
146822	chr20	51398551	51399050	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	54177	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
99877	chr17	56639751	56639850	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	46101	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
15404	chr1	150238571	150238830	+	0	NA	Intergenic	AluY|SINE|Alu	-2588	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
82331	chr16	15821871	15822100	+	0	NA	intron (NM_022844, intron 3 of 41).2	intron (NM_022844, intron 3 of 41).2	35043	NM_001040113	4629		NM_002474	ENSG00000133392	MYH11	AAT4|FAA4|SMHC|SMMHC|SMMS-1|VSCM2	myosin heavy chain 11	protein-coding
83851	chr16	28876921	28877580	+	0	NA	Intergenic	Intergenic	-1238	NM_004320	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
235237	chrX	41438351	41438850	+	0	NA	Intergenic	AluSz6|SINE|Alu	-8743	NM_001378477	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
105239	chr17	82386471	82386630	+	0	NA	Intergenic	Intergenic	14785	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
127592	chr2	42812301	42812500	+	0	NA	Intergenic	AluSc8|SINE|Alu	-19817	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
177670	chr4	121708401	121708600	+	0	NA	Intergenic	Intergenic	-11520	NM_001154	308		NM_001154	ENSG00000164111	ANXA5	ANX5|CPB-I|ENX2|HEL-S-7|PP4|RPRGL3|VAC-alph	annexin A5	protein-coding
214395	chr7	149788571	149788730	+	0	NA	non-coding (NR_163594, exon 26 of 103)	non-coding (NR_163594, exon 26 of 103)	12608	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
158786	chr3	9552221	9552800	+	0	NA	exon (NM_198560, exon 2 of 4)	exon (NM_198560, exon 2 of 4)	1312	NM_198560	375323		NM_198560	ENSG00000156959	LHFPL4	GARLH4	LHFPL tetraspan subfamily member 4	protein-coding
169656	chr3	171491071	171491730	+	0	NA	Intergenic	Intergenic	-30992	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
213724	chr7	140326221	140326700	+	0	NA	Intergenic	Intergenic	72070	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
48615	chr12	10367871	10368030	+	0	NA	intron (NR_120430, intron 1 of 3)	LTR15|LTR|ERV1	4181	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
60359	chr13	40918221	40918880	+	0	NA	intron (NR_003365, intron 2 of 2)	AluSx1|SINE|Alu	3200	NR_038258	100616668		NR_038258		TPTE2P5	-	TPTE2 pseudogene 5	pseudo
69931	chr14	99593621	99593880	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	10457	NM_001144995	317762		NM_022747	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
50216	chr12	46219051	46220780	+	0	NA	intron (NM_001278387, intron 6 of 17)	intron (NM_001278387, intron 6 of 17)	46601	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
74843	chr15	63512671	63513280	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	8382	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
1688	chr1	4632571	4632730	+	0	NA	Intergenic	(CACAGCA)n|Simple_repeat|Simple_repeat	-21959	NM_001042478	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
32285	chr10	102119121	102122050	+	0	NA	promoter-TSS (NM_001113407)	promoter-TSS (NM_001113407)	-217	NM_001321612	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
90789	chr17	2091101	2091980	+	0	NA	intron (NM_001256827, intron 6 of 11)	intron (NM_001256827, intron 6 of 11)	-2779	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
83158	chr16	23460701	23461100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7711	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
219014	chr8	63206121	63206380	+	0	NA	intron (NM_001277815, intron 5 of 5)	AluSp|SINE|Alu	37247	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
48774	chr12	11646521	11646930	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-2949	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
188807	chr5	158434901	158435500	+	0	NA	Intergenic	Intergenic	-25427	NR_109888	101927697		NR_109888	ENSG00000276778	LINC02227	-	long intergenic non-protein coding RNA 2227	ncRNA
36320	chr11	3864401	3865030	+	0	NA	intron (NM_001382571, intron 1 of 9)	MLT1F2|LTR|ERVL-MaLR	8653	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
197377	chr6	73482901	73483300	+	0	NA	intron (NM_133645, intron 10 of 12)	intron (NM_133645, intron 10 of 12)	21363	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
234290	chrX	13670271	13670530	+	0	NA	Intergenic	Intergenic	17259	NM_001297563	170082		NM_152634	ENSG00000176896	TCEANC	TCEANC1	transcription elongation factor A N-terminal and central domain containing	protein-coding
108791	chr18	77367001	77367200	+	0	NA	Intergenic	Intergenic	117252	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
122792	chr19	50332571	50332730	+	0	NA	intron (NR_110912, intron 1 of 3)	intron (NR_110912, intron 1 of 3)	886	NR_110912	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
177124	chr4	108103051	108103350	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	63597	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
142001	chr20	1462551	1462650	+	0	NA	intron (NR_038164, intron 1 of 7)	AluY|SINE|Alu	5092	NM_018839	55968		NM_016143	ENSG00000088833	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 cofactor	protein-coding
186772	chr5	139338871	139339430	+	0	NA	Intergenic	Intergenic	-2682	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
7127	chr1	32183171	32184150	+	0	NA	intron (NM_001376858, intron 2 of 9)	AluY|SINE|Alu	3595	NM_001376857	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
25764	chr10	11104921	11105980	+	0	NA	promoter-TSS (NR_046108)	promoter-TSS (NR_046108)	38	NR_046108	439950		NR_046108	ENSG00000237986	CELF2-AS2	-	CELF2 antisense RNA 2	ncRNA
142334	chr20	3680871	3681300	+	0	NA	intron (NM_025220, intron 1 of 21)	intron (NM_025220, intron 1 of 21)	925	NM_001282447	80332		NM_025220	ENSG00000149451	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
48432	chr12	9687051	9687600	+	0	NA	intron (NM_013269, intron 2 of 4)	MER1A|DNA|hAT-Charlie	17612	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
89205	chr16	88611501	88611900	+	0	NA	intron (NM_144604, intron 8 of 17)	intron (NM_144604, intron 8 of 17)	-26872	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
160625	chr3	31535571	31536700	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	3210	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
17481	chr1	156717671	156718030	+	0	NA	Intergenic	AluSz6|SINE|Alu	10589	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
178058	chr4	139978771	139978930	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-149165	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
174918	chr4	49110571	49111100	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	124193	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
60157	chr13	40069051	40069730	+	0	NA	Intergenic	Intergenic	-112419	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
10373	chr1	64958801	64959000	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	7649	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
114483	chr19	12751001	12751400	+	0	NA	promoter-TSS (NM_017682)	promoter-TSS (NM_017682)	-591	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
115085	chr19	14221351	14222280	+	0	NA	Intergenic	Intergenic	-15646	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
188301	chr5	151157051	151158070	+	0	NA	intron (NM_001363114, intron 1 of 24)	CpG	219	NM_001155	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
48254	chr12	8482601	8483200	+	0	NA	Intergenic	Intergenic	26938	NM_001007033	93978		NM_001007033	ENSG00000205846	CLEC6A	CLEC4N|CLECSF10|dectin-2|hDECTIN-2	C-type lectin domain containing 6A	protein-coding
197871	chr6	89088901	89089580	+	0	NA	Intergenic	AluJb|SINE|Alu	8489	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
84608	chr16	30676471	30676630	+	0	NA	Intergenic	Intergenic	18119	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
92017	chr17	7468071	7468230	+	0	NA	intron (NM_020899, intron 1 of 3)	AluSq|SINE|Alu	11481	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
232138	chr9	134029901	134030100	+	0	NA	TTS (NM_007371)	TTS (NM_007371)	4519	NM_001355256	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
152000	chr22	19183351	19183650	+	0	NA	exon (NM_007098, exon 30 of 33)	exon (NM_007098, exon 30 of 33)	-4637	NR_046298	6576		NM_005984	ENSG00000100075	SLC25A1	CIC|CMS23|CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
188034	chr5	149655501	149655700	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	74102	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
113776	chr19	10541201	10542250	+	0	NA	Intergenic	MIR|SINE|MIR	-2179	NR_104025	84971		NM_032885	ENSG00000130734	ATG4D	APG4-D|APG4D|AUTL4|HsAPG4D	autophagy related 4D cysteine peptidase	protein-coding
158264	chr22	50317751	50317850	+	0	NA	intron (NM_001001794, intron 4 of 19)	intron (NM_001001794, intron 4 of 19)	9212	NM_001001794	414918		NM_001001794	ENSG00000205593	DENND6B	AFI1B|FAM116B	DENN domain containing 6B	protein-coding
16071	chr1	153407071	153407550	+	0	NA	intron (NM_001319198, intron 1 of 2)	L1PA5|LINE|L1	-9210	NM_176823	338324		NM_176823	ENSG00000184330	S100A7A	NICE-2|NICE2|S100A15|S100A7L1|S100A7f	S100 calcium binding protein A7A	protein-coding
10425	chr1	65687651	65688030	+	0	NA	Intergenic	(CCTTCTG)n|Simple_repeat|Simple_repeat	-104670	NM_001297440	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
108460	chr18	70499201	70499480	+	0	NA	Intergenic	Intergenic	-114749	NR_110764	101060542		NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
216180	chr8	11804351	11805180	+	0	NA	intron (NM_001287745, intron 2 of 8)	AluSx1|SINE|Alu	1676	NM_001287748	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
92834	chr17	16206171	16206330	+	0	NA	intron (NM_006311, intron 1 of 45)	L1ME3G|LINE|L1	9284	NM_006311	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
93354	chr17	18228971	18229400	+	0	NA	intron (NM_004140, intron 1 of 22)	intron (NM_004140, intron 1 of 22)	3550	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
62570	chr13	99971971	99972380	+	0	NA	promoter-TSS (NM_033132)	promoter-TSS (NM_033132)	-266	NM_033132	85416		NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
44590	chr11	108279371	108279530	+	0	NA	intron (NM_000051, intron 22 of 62)	intron (NM_000051, intron 22 of 62)	55921	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
116686	chr19	18418201	18419900	+	0	NA	promoter-TSS (NM_001009998)	promoter-TSS (NM_001009998)	-348	NM_001009998	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
132409	chr2	105802201	105803200	+	0	NA	intron (NM_001004722, intron 1 of 3)	MSTB1|LTR|ERVL-MaLR	-49147	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
85620	chr16	53952221	53952680	+	0	NA	intron (NR_156761, intron 4 of 4)	intron (NR_156761, intron 4 of 4)	-86943	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
7012	chr1	31906671	31906830	+	0	NA	3' UTR (NM_001195101, exon 5 of 5)	3' UTR (NM_001195101, exon 5 of 5)	31068	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
239152	chrY	11330901	11331330	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1090475	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
202407	chr6	157873071	157873230	+	0	NA	exon (NM_016224, exon 3 of 18)	exon (NM_016224, exon 3 of 18)	49904	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
63784	chr14	21268711	21270480	+	0	NA	promoter-TSS (NM_031314)	promoter-TSS (NM_031314)	-116	NM_001077442	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
88551	chr16	85480221	85480530	+	0	NA	Intergenic	Intergenic	-131034	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
67586	chr14	71711121	71711380	+	0	NA	intron (NM_001354286, intron 18 of 24)	intron (NM_001354286, intron 18 of 24)	124952	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
124821	chr2	7692201	7692800	+	0	NA	Intergenic	L1ME5|LINE|L1	207155	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
142280	chr20	3207951	3208250	+	0	NA	promoter-TSS (NM_001324238)	promoter-TSS (NM_001324238)	-576	NM_001324238	3704		NM_033453	ENSG00000125877	ITPA	C20orf37|DEE35|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3	inosine triphosphatase	protein-coding
231691	chr9	131712401	131712600	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-2658	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
183682	chr5	80671901	80672490	+	0	NA	intron (NM_002439, intron 4 of 23)	intron (NM_002439, intron 4 of 23)	-17212	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
42880	chr11	73335271	73336180	+	0	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	-26364	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
127747	chr2	43612451	43613200	+	0	NA	Intergenic	Intergenic	-16779	NM_001345923	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
152281	chr22	20300771	20300930	+	0	NA	Intergenic	Intergenic	19210	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
153328	chr22	24284821	24285550	+	0	NA	intron (NR_103546, intron 2 of 19)	intron (NR_103546, intron 2 of 19)	14354	NM_001254732	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
53466	chr12	65922171	65922330	+	0	NA	intron (NM_003483, intron 3 of 4)	THE1A-int|LTR|ERVL-MaLR	-39925	NR_158985	100129940		NR_120478	ENSG00000197301	HMGA2-AS1	-	HMGA2 antisense RNA 1	ncRNA
83026	chr16	22304501	22305080	+	0	NA	intron (NM_001258034, intron 2 of 19).2	intron (NM_001258034, intron 2 of 19).2	7381	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
44565	chr11	108221601	108224400	+	0	NA	promoter-TSS (NM_001351836)	promoter-TSS (NM_001351836)	-67	NM_000051	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
205809	chr7	24419101	24419300	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	135010	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
33431	chr10	118759501	118759850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4705	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
135807	chr2	170084251	170084350	+	0	NA	TTS (NM_172070)	TTS (NM_172070)	-93847	NM_001083615	140469		NM_138995	ENSG00000071909	MYO3B	-	myosin IIIB	protein-coding
126157	chr2	26298251	26299300	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	20274	NM_001145168	165082		NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding
107038	chr18	32108171	32108330	+	0	NA	intron (NM_198128, intron 1 of 4)	L1ME3A|LINE|L1	15644	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
196250	chr6	42900201	42900780	+	0	NA	Intergenic	AluY|SINE|Alu	-9669	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
47876	chr12	6686151	6686450	+	0	NA	intron (NM_001039920, intron 2 of 8)	AluSx1|SINE|Alu	3075	NM_133476	171017		NM_133476	ENSG00000126746	ZNF384	CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1	zinc finger protein 384	protein-coding
77577	chr15	85002421	85002830	+	0	NA	intron (NM_173454, intron 1 of 20)	MER21C|LTR|ERVL	20651	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
172244	chr4	1350621	1351100	+	0	NA	intron (NM_001317935, intron 3 of 13)	intron (NM_001317935, intron 3 of 13)	3304	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
91740	chr17	6749821	6750080	+	0	NA	Intergenic	Intergenic	-5497	NM_001353135	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
135586	chr2	165956771	165957130	+	0	NA	promoter-TSS (NR_110598)	promoter-TSS (NR_110598)	-468	NR_110598	102724058		NR_110598	ENSG00000236107	LOC102724058	-	uncharacterized LOC102724058	ncRNA
51863	chr12	53480471	53481180	+	0	NA	3' UTR (NM_001128912, exon 15 of 15)	3' UTR (NM_001128912, exon 15 of 15)	16357	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
165919	chr3	107241351	107241530	+	0	NA	promoter-TSS (NR_028303)	promoter-TSS (NR_028303)	748	NR_028302	344595		NR_028301	ENSG00000243701	DUBR	DUM|LINC00883|LINC0883	DPPA2 upstream binding RNA	ncRNA
101945	chr17	74520101	74520300	+	0	NA	TTS (NM_174892)	TTS (NM_174892)	11275	NM_174892	124599		NM_174892	ENSG00000178789	CD300LB	CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5	CD300 molecule like family member b	protein-coding
32496	chr10	102712801	102713000	+	0	NA	intron (NM_004311, intron 1 of 5)	intron (NM_004311, intron 1 of 5)	1497	NM_004311	403		NM_004311	ENSG00000138175	ARL3	ARFL3|JBTS35|RP83	ADP ribosylation factor like GTPase 3	protein-coding
36065	chr11	2955351	2955650	+	0	NA	intron (NM_001369382, intron 12 of 15).2	AluSx|SINE|Alu	8393	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
130405	chr2	85329451	85329950	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1711	NM_001368095	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
237272	chrX	111040821	111041380	+	0	NA	intron (NM_001128166, intron 2 of 15)	intron (NM_001128166, intron 2 of 15)	-55091	NM_002578	5063		NM_002578	ENSG00000077264	PAK3	ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|XLID30|bPAK|beta-PAK	p21 (RAC1) activated kinase 3	protein-coding
221432	chr8	123837971	123838350	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-13827	NM_001039112	654463		NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1 like family member 6	protein-coding
62621	chr13	100611951	100613200	+	0	NA	intron (NR_146794, intron 15 of 18)	intron (NR_146794, intron 15 of 18)	-23783	NM_001195087	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
74419	chr15	59052001	59052400	+	0	NA	intron (NM_017610, intron 2 of 13)	intron (NM_017610, intron 2 of 13)	-52946	NM_004701	9133		NM_004701	ENSG00000157456	CCNB2	HsT17299	cyclin B2	protein-coding
229423	chr9	121332021	121332280	+	0	NA	intron (NM_001353056, intron 18 of 18)	intron (NM_001353056, intron 18 of 18)	32319	NM_000177	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
107974	chr18	58578471	58578830	+	0	NA	intron (NM_052947, intron 4 of 12)	intron (NM_052947, intron 4 of 12)	-21970	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
98943	chr17	48633601	48634300	+	0	NA	Intergenic	CpG	-1391	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
156465	chr22	41255051	41255580	+	0	NA	intron (NM_001278651, intron 11 of 16)	intron (NM_001278651, intron 11 of 16)	-2265	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
105167	chr17	82265101	82265680	+	0	NA	intron (NM_139062, intron 2 of 9)	AluSz|SINE|Alu	8310	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
146795	chr20	50930321	50932550	+	0	NA	promoter-TSS (NM_001282531)	promoter-TSS (NM_001282531)	2	NM_001282531	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
235169	chrX	41177251	41177600	+	0	NA	intron (NM_001039590, intron 21 of 44)	L1MC4|LINE|L1	91980	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
36090	chr11	3012721	3012980	+	0	NA	intron (NR_165428, intron 17 of 22)	intron (NR_165428, intron 17 of 22)	-16544	NR_046580	100852407		NR_046580	ENSG00000247473	CARS1-AS1	CARS-AS1	CARS1 antisense RNA 1	ncRNA
71006	chr14	104746021	104746580	+	0	NA	exon (NM_152328, exon 12 of 13)	exon (NM_152328, exon 12 of 13)	-6847	NM_021709	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
195332	chr6	36617951	36618050	+	0	NA	Intergenic	AluSz6|SINE|Alu	4512	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
161071	chr3	38083001	38083820	+	0	NA	intron (NM_001321153, intron 6 of 36)	LTR7|LTR|ERV1	44202	NM_007335	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
81579	chr16	9314221	9314300	+	0	NA	Intergenic	(TCAGC)n|Simple_repeat|Simple_repeat	-41328	NR_135195	101927009		NR_135195	ENSG00000261617	LINC02177	-	long intergenic non-protein coding RNA 2177	ncRNA
85571	chr16	53464701	53464900	+	0	NA	intron (NM_001323609, intron 12 of 20)	AluY|SINE|Alu	29181	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
34229	chr10	130106901	130107100	+	0	NA	non-coding (NR_044994, exon 1 of 1)	non-coding (NR_044994, exon 1 of 1)	991	NR_044994	119437		NR_044994	ENSG00000233122	CTAGE7P	CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5	CTAGE family member 7, pseudogene	pseudo
11524	chr1	90974301	90974930	+	0	NA	intron (NM_201269, intron 2 of 5)	L2a|LINE|L2	46893	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
70708	chr14	103330021	103330280	+	0	NA	Intergenic	MIRb|SINE|MIR	-4087	NM_001969	1983		NM_001969	ENSG00000100664	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
45274	chr11	118012101	118013000	+	0	NA	Intergenic	Intergenic	26156	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
184106	chr5	93911651	93911750	+	0	NA	intron (NR_028080, intron 4 of 8)	intron (NR_028080, intron 4 of 8)	-170100	NM_153216	134187		NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
200708	chr6	137487951	137489800	+	0	NA	Intergenic	CpG	5519	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
189242	chr5	171985121	171985650	+	0	NA	intron (NM_012300, intron 1 of 12)	AluJr|SINE|Alu	21253	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
31694	chr10	97591201	97591600	+	0	NA	TTS (NM_001009997)	TTS (NM_001009997)	1679	NM_001009997	414157		NM_001009997	ENSG00000203942	C10orf62	bA548K23.1	chromosome 10 open reading frame 62	protein-coding
177999	chr4	139295201	139296250	+	0	NA	intron (NM_001184987, intron 2 of 4)	CpG	5485	NM_001184991	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
52042	chr12	54010221	54010880	+	0	NA	intron (NM_022658, intron 1 of 1)	intron (NM_022658, intron 1 of 1)	1565	NM_022658	3224		NM_022658	ENSG00000037965	HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
162629	chr3	48765471	48765730	+	0	NA	intron (NM_004157, intron 6 of 10)	intron (NM_004157, intron 6 of 10)	-48322	NM_001190316	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
219881	chr8	85507651	85507950	+	0	NA	Intergenic	Intergenic	-42885	NR_121630	100996348		NR_121630		CA3-AS1	-	CA3 antisense RNA 1	ncRNA
96899	chr17	42123251	42123980	+	0	NA	TTS (NM_033194)	TTS (NM_033194)	811	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
19730	chr1	181135421	181135900	+	0	NA	Intergenic	Intergenic	-38824	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
66618	chr14	63725901	63726180	+	0	NA	intron (NM_030791, intron 1 of 2)	intron (NM_030791, intron 1 of 2)	2025	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
188978	chr5	163509221	163509780	+	0	NA	intron (NM_013283, intron 1 of 6)	MER5A|DNA|hAT-Charlie	3881	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
192720	chr6	26341451	26342500	+	0	NA	Intergenic	Intergenic	-23184	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
181337	chr5	40405871	40406400	+	0	NA	Intergenic	Intergenic	-273780	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
18887	chr1	168225251	168227200	+	0	NA	intron (NM_199344, intron 1 of 7)	CpG	221	NM_199344	375035		NM_199344	ENSG00000213064	SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
70342	chr14	101851251	101851550	+	0	NA	intron (NM_001352916, intron 2 of 13)	AluJb|SINE|Alu	41537	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
212391	chr7	128100571	128101580	+	0	NA	Intergenic	Intergenic	19214	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
52554	chr12	56144751	56145100	+	0	NA	TTS (NM_001184796)	TTS (NM_001184796)	-7662	NM_001199629	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
93633	chr17	19170951	19171050	+	0	NA	Intergenic	Intergenic	-8376	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
201195	chr6	143399771	143399930	+	0	NA	Intergenic	Intergenic	42827	NM_001286259	134637		NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase tRNA specific 2	protein-coding
1079	chr1	1925221	1925700	+	0	NA	intron (NM_001304360, intron 33 of 38)	intron (NM_001304360, intron 33 of 38)	-6181	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
156572	chr22	41473751	41474130	+	0	NA	intron (NM_001098, intron 1 of 17)	L2a|LINE|L2	4823	NM_001098	50		NM_001098	ENSG00000100412	ACO2	ACONM|HEL-S-284|ICRD|OCA8|OPA9	aconitase 2	protein-coding
43011	chr11	73982101	73984780	+	0	NA	promoter-TSS (NM_001381943)	promoter-TSS (NM_001381943)	-238	NM_001381944	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
135782	chr2	169761771	169762130	+	0	NA	Intergenic	Intergenic	28118	NM_144711	151230		NM_144711	ENSG00000213160	KLHL23	DITHP	kelch like family member 23	protein-coding
19627	chr1	180152821	180153080	+	0	NA	Intergenic	L2a|LINE|L2	-1883	NM_001004128	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
153686	chr22	29122071	29122300	+	0	NA	intron (NM_001039570, intron 4 of 8)	L1ME1|LINE|L1	49150	NM_032045	83999		NM_032045	ENSG00000183762	KREMEN1	ECTD13|KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
217432	chr8	28442721	28443000	+	0	NA	intron (NM_172366, intron 7 of 8)	intron (NM_172366, intron 7 of 8)	47369	NM_172366	157574		NM_172366	ENSG00000214050	FBXO16	FBX16	F-box protein 16	protein-coding
163873	chr3	52500971	52501730	+	0	NA	intron (NM_015136, intron 2 of 68)	intron (NM_015136, intron 2 of 68)	6012	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
218624	chr8	56156471	56156630	+	0	NA	Intergenic	Intergenic	-42568	NM_005372	4342		NM_005372	ENSG00000172680	MOS	MSV|OZEMA20	MOS proto-oncogene, serine/threonine kinase	protein-coding
26652	chr10	22583351	22583650	+	0	NA	intron (NM_001330062, intron 4 of 9)	intron (NM_001330062, intron 4 of 9)	130608	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
212846	chr7	130831751	130832150	+	0	NA	Intergenic	L1MC4|LINE|L1	44860	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
81320	chr16	4705501	4705700	+	0	NA	intron (NM_133450, intron 7 of 17)	AluSz6|SINE|Alu	11882	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
115553	chr19	15533351	15533650	+	0	NA	intron (NM_173483, intron 4 of 13)	L1MB5|LINE|L1	24975	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
92140	chr17	7630001	7630580	+	0	NA	intron (NM_001289116, intron 1 of 7)	intron (NM_001289116, intron 1 of 7)	155	NM_001146279	6462		NM_001040	ENSG00000129214	SHBG	ABP|SBP|TEBG	sex hormone binding globulin	protein-coding
101671	chr17	68343951	68345280	+	0	NA	intron (NM_001352909, intron 3 of 10)	intron (NM_001352909, intron 3 of 10)	52480	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
55505	chr12	104985651	104986900	+	0	NA	promoter-TSS (NM_152318)	promoter-TSS (NM_152318)	-41	NM_152318	121053		NM_152318	ENSG00000151131	NOPCHAP1	C12orf45|DDSR1	NOP protein chaperone 1	protein-coding
1544	chr1	3455901	3456300	+	0	NA	intron (NM_014448, intron 1 of 14)	intron (NM_014448, intron 1 of 14)	1435	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
76768	chr15	76993501	76994400	+	0	NA	promoter-TSS (NM_001321137)	promoter-TSS (NM_001321137)	-730	NM_001321137	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
132224	chr2	102261471	102261630	+	0	NA	Intergenic	Intergenic	-49952	NM_001282408	9173		NM_003856	ENSG00000115602	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor like 1	protein-coding
164926	chr3	71193771	71194130	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	51127	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
182159	chr5	56587221	56587930	+	0	NA	intron (NR_161255, intron 1 of 5)	L2a|LINE|L2	18681	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
166884	chr3	124034071	124034600	+	0	NA	Intergenic	CpG	-42165	NM_001317774	54763		NM_017578	ENSG00000065371	ROPN1	CT91|ODF6|RHPNAP1|ROPN1A|ropporin	rhophilin associated tail protein 1	protein-coding
229231	chr9	114925571	114926100	+	0	NA	intron (NM_001244, intron 1 of 3)	LTR68|LTR|ERV1	4756	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
175505	chr4	73666051	73666150	+	0	NA	Intergenic	LTR13|LTR|ERVK	-45469	NM_001270392	166824		NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding
76539	chr15	75182471	75182830	+	0	NA	Intergenic	Intergenic	-19232	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
116328	chr19	17832471	17832930	+	0	NA	exon (NM_000215, exon 19 of 24)	exon (NM_000215, exon 19 of 24)	-11181	NM_001265587	3640		NM_005543	ENSG00000248099	INSL3	RLF|RLNL|ley-I-L	insulin like 3	protein-coding
228921	chr9	113150771	113151680	+	0	NA	intron (NM_001860, intron 1 of 3)	CpG	218	NM_001860	1318		NM_001860	ENSG00000136867	SLC31A2	COPT2|CTR2|hCTR2	solute carrier family 31 member 2	protein-coding
202922	chr6	160298121	160298380	+	0	NA	Intergenic	Intergenic	-39429	NM_003058	6582		NM_003058	ENSG00000112499	SLC22A2	OCT2	solute carrier family 22 member 2	protein-coding
99367	chr17	49910171	49910950	+	0	NA	Intergenic	CpG	-58630	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
237129	chrX	106614721	106615180	+	0	NA	intron (NM_018015, intron 1 of 13)	L1ME3|LINE|L1	2972	NM_018015	55086		NM_018015	ENSG00000147231	RADX	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein-coding
30005	chr10	73767921	73768280	+	0	NA	intron (NM_198597, intron 15 of 22)	intron (NM_198597, intron 15 of 22)	-4176	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
107127	chr18	35097121	35097380	+	0	NA	intron (NR_046177, intron 2 of 6)	intron (NR_046177, intron 2 of 6)	55837	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
170486	chr3	186067371	186068000	+	0	NA	intron (NM_004454, intron 7 of 12)	L1ME4a|LINE|L1	41404	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
208258	chr7	65722401	65722950	+	0	NA	intron (NR_103527, intron 3 of 3)	(TTTC)n|Simple_repeat|Simple_repeat	28249	NR_103527	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
99678	chr17	50753051	50753350	+	0	NA	TTS (NM_006107)	TTS (NM_006107)	14318	NM_001358683	55018		NM_017928	ENSG00000167117	ANKRD40CL	C17orf73|LINC00483	ANKRD40 C-terminal like	protein-coding
104270	chr17	80788451	80788830	+	0	NA	intron (NM_020761, intron 6 of 33)	L1MEh|LINE|L1	16992	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
238771	chrX	154359021	154359300	+	0	NA	intron (NM_001110556, intron 25 of 47)	intron (NM_001110556, intron 25 of 47)	15474	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
27198	chr10	28569601	28570300	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	36832	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
154474	chr22	35604901	35605100	+	0	NA	Intergenic	Intergenic	12329	NM_005368	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
122568	chr19	49670201	49671000	+	0	NA	intron (NM_138639, intron 6 of 6)	intron (NM_138639, intron 6 of 6)	4667	NM_138639	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
218723	chr8	58701671	58702130	+	0	NA	Intergenic	Intergenic	-42047	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
21540	chr1	206012121	206012580	+	0	NA	exon (NM_001317331, exon 6 of 7)	exon (NM_001317331, exon 6 of 7)	-8955	NM_001304839	338382		NM_177403	ENSG00000276600	RAB7B	RAB7	RAB7B, member RAS oncogene family	protein-coding
129307	chr2	68651151	68651630	+	0	NA	intron (NM_138964, intron 2 of 2)	AluJo|SINE|Alu	7811	NM_138964	10887		NM_138964	ENSG00000169618	PROKR1	GPR73|GPR73a|PK-R1|PKR1|ZAQ	prokineticin receptor 1	protein-coding
220434	chr8	100302901	100303500	+	0	NA	promoter-TSS (NM_015435)	promoter-TSS (NM_015435)	59	NM_015435	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
96656	chr17	40625351	40625650	+	0	NA	3' UTR (NM_003079, exon 11 of 11)	3' UTR (NM_003079, exon 11 of 11)	22318	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
169869	chr3	177284371	177284750	+	0	NA	Intergenic	Intergenic	-9882	NR_047465	100820709		NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
69045	chr14	91863551	91864200	+	0	NA	intron (NM_001128596, intron 1 of 11)	AluJr|SINE|Alu	3661	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
27891	chr10	41878651	41878750	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	489345	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
27405	chr10	31348151	31349200	+	0	NA	intron (NM_001323675, intron 1 of 6)	intron (NM_001323675, intron 1 of 6)	27015	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
38012	chr11	35087721	35088030	+	0	NA	Intergenic	Intergenic	50157	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
187057	chr5	140106151	140106450	+	0	NA	non-coding (NR_102739, exon 1 of 3)	non-coding (NR_102739, exon 1 of 3)	1712	NR_102741	100505636		NR_102739		MALINC1	LINC01024|MA-linc1	mitosis associated long intergenic non-coding RNA 1	ncRNA
94275	chr17	28708421	28708880	+	0	NA	intron (NM_001304949, intron 1 of 4)	FLAM_C|SINE|Alu	1454	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
39597	chr11	61299801	61300000	+	0	NA	3' UTR (NM_001923, exon 27 of 27)	3' UTR (NM_001923, exon 27 of 27)	-4584	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
34905	chr11	395301	395700	+	0	NA	intron (NM_007183, intron 1 of 12)	intron (NM_007183, intron 1 of 12)	1291	NM_007183	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
236302	chrX	68433121	68433850	+	0	NA	promoter-TSS (NM_002547)	promoter-TSS (NM_002547)	10	NM_002547	4983		NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|MRXSBL|OPN1	oligophrenin 1	protein-coding
181441	chr5	40838121	40838780	+	0	NA	Intergenic	AluSp|SINE|Alu	-2917	NM_032587	84674		NM_032587	ENSG00000132357	CARD6	CINCIN1	caspase recruitment domain family member 6	protein-coding
6881	chr1	31373121	31374330	+	0	NA	promoter-TSS (NM_001320996)	promoter-TSS (NM_001320996)	-437	NM_001320996	2170		NM_004102	ENSG00000121769	FABP3	FABP11|H-FABP|M-FABP|MDGI|O-FABP	fatty acid binding protein 3	protein-coding
75145	chr15	64602501	64603150	+	0	NA	intron (NM_015042, intron 2 of 9)	AluY|SINE|Alu	100456	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
205612	chr7	22174071	22174450	+	0	NA	intron (NM_001367603, intron 1 of 5)	intron (NM_001367603, intron 1 of 5)	19485	NM_001367601	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
156776	chr22	41894871	41895230	+	0	NA	intron (NR_103834, intron 14 of 21)	intron (NR_103834, intron 14 of 21)	-5894	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
77731	chr15	85719801	85720400	+	0	NA	intron (NM_007200, intron 23 of 36)	AluJr|SINE|Alu	38625	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
102029	chr17	74856801	74857000	+	0	NA	intron (NM_001278553, intron 1 of 11)	intron (NM_001278553, intron 1 of 11)	2984	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
230245	chr9	127885571	127885730	+	0	NA	non-coding (NR_104629, exon 6 of 6)	non-coding (NR_104629, exon 6 of 6)	-6029	NM_001318121	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
232027	chr9	133377571	133378150	+	0	NA	promoter-TSS (NM_001280788).2	promoter-TSS (NM_001280788).2	89	NM_001280788	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
136754	chr2	181310871	181311400	+	0	NA	intron (NR_130784, intron 3 of 4)	AluJb|SINE|Alu	-5483	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
72594	chr15	35481221	35481480	+	0	NA	intron (NM_080650, intron 3 of 8)	L1MC5|LINE|L1	64815	NM_080650	89978		NM_080650	ENSG00000134146	DPH6	ATPBD4	diphthamine biosynthesis 6	protein-coding
67991	chr14	74940071	74940700	+	0	NA	Intergenic	Intergenic	15379	NM_001293643	5228		NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
122596	chr19	49749251	49749550	+	0	NA	intron (NM_021733, intron 2 of 10)	intron (NM_021733, intron 2 of 10)	13906	NM_021733	60385		NM_021733	ENSG00000126467	TSKS	PPP1R161|STK22S1|TSKS1|TSSKS	testis specific serine kinase substrate	protein-coding
79480	chr16	766101	766830	+	0	NA	exon (NM_013404, exon 12 of 17)	exon (NM_013404, exon 12 of 17)	-3718	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
120410	chr19	43784051	43784680	+	0	NA	Intergenic	Intergenic	-3392	NM_002250	3783		NM_002250	ENSG00000104783	KCNN4	DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium calcium-activated channel subfamily N member 4	protein-coding
8623	chr1	41675021	41675280	+	0	NA	intron (NM_001127714, intron 1 of 7)	L2c|LINE|L2	-190467	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
175164	chr4	55842001	55842300	+	0	NA	Intergenic	L1PA3|LINE|L1	-11498	NM_001024924	55763		NM_018261	ENSG00000090989	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
137144	chr2	191054501	191054700	+	0	NA	intron (NM_003151, intron 13 of 23)	intron (NM_003151, intron 13 of 23)	33074	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
186576	chr5	138490901	138491200	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	25571	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
188850	chr5	159207501	159208700	+	0	NA	promoter-TSS (NM_001199381)	promoter-TSS (NM_001199381)	-27	NM_001199381	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
177977	chr4	139086171	139086630	+	0	NA	intron (NM_001371324, intron 5 of 10)	intron (NM_001371324, intron 5 of 10)	-1986	NM_001276457	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
104543	chr17	81294421	81295800	+	0	NA	5' UTR (NM_138570, exon 1 of 14)	5' UTR (NM_138570, exon 1 of 14)	197	NM_001037984	124565		NM_138570	ENSG00000157637	SLC38A10	PP1744|SNAT10	solute carrier family 38 member 10	protein-coding
2891	chr1	11653451	11653750	+	0	NA	promoter-TSS (NM_001304791)	promoter-TSS (NM_001304791)	-807	NM_183412	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
28497	chr10	50069451	50069630	+	0	NA	intron (NM_001291398, intron 2 of 29)	intron (NM_001291398, intron 2 of 29)	1586	NM_001005751	387680		NM_018232	ENSG00000099290	WASHC2A	FAM21A|FAM21B|bA56A21.1|bA98I6.1	WASH complex subunit 2A	protein-coding
35394	chr11	1348901	1349300	+	0	NA	Intergenic	Intergenic	39392	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
27356	chr10	30706751	30706850	+	0	NA	intron (NR_036438, intron 7 of 9)	intron (NR_036438, intron 7 of 9)	14526	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
102323	chr17	75396601	75396800	+	0	NA	intron (NM_203506, intron 1 of 4)	FLAM_C|SINE|Alu	8978	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
165852	chr3	105863371	105863530	+	0	NA	intron (NM_001321811, intron 2 of 16)	intron (NM_001321811, intron 2 of 16)	4141	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
159246	chr3	12926471	12926630	+	0	NA	intron (NM_014869, intron 3 of 13)	intron (NM_014869, intron 3 of 13)	41180	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
11216	chr1	88868501	88869130	+	0	NA	intron (NM_001514, intron 2 of 6)	AluY|SINE|Alu	22752	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
74884	chr15	63588701	63589300	+	0	NA	exon (NM_006537, exon 14 of 15)	exon (NM_006537, exon 14 of 15)	-8387	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
118649	chr19	37301721	37302080	+	0	NA	Intergenic	SST1|Satellite|centr	-10937	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
154102	chr22	31082651	31083130	+	0	NA	promoter-TSS (NM_001207017)	promoter-TSS (NM_001207017)	30	NM_001207017	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
134456	chr2	143182971	143183330	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	53731	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
131175	chr2	94209021	94209280	+	0	NA	promoter-TSS (NR_146105)	promoter-TSS (NR_146105)	-731	NR_146107	728034		NR_146105		BMS1P23	-	BMS1 pseudogene 23	pseudo
146478	chr20	49802071	49803050	+	0	NA	Intergenic	Intergenic	-10153	NM_001260491	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
169735	chr3	172461451	172461950	+	0	NA	Intergenic	L2b|LINE|L2	-13244	NM_198407	2693		NM_004122	ENSG00000121853	GHSR	GHDP|GHS-R1a|GHSR-1a	growth hormone secretagogue receptor	protein-coding
24626	chr1	246577921	246578480	+	0	NA	intron (NM_001139459, intron 1 of 8)	intron (NM_001139459, intron 1 of 8)	11744	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
59271	chr13	24203701	24204150	+	0	NA	intron (NM_153023, intron 1 of 11)	L2b|LINE|L2	41509	NR_031753	100313842		NR_031753	ENSG00000252695	MIR2276	-	microRNA 2276	ncRNA
232249	chr9	134398451	134398980	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	-7845	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
85737	chr16	56675621	56676630	+	0	NA	promoter-TSS (NR_003669)	promoter-TSS (NR_003669)	9	NR_003669	644314		NM_175621		MT1IP	MT1|MT1I|MTE	metallothionein 1I, pseudogene	pseudo
102247	chr17	75260401	75262250	+	0	NA	promoter-TSS (NM_015971)	promoter-TSS (NM_015971)	281	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
113572	chr19	10261621	10262080	+	0	NA	Intergenic	Intergenic	-9270	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
100025	chr17	57984571	57984950	+	0	NA	intron (NM_007146, intron 1 of 5)	intron (NM_007146, intron 1 of 5)	3494	NM_001330393	7716		NM_007146	ENSG00000136451	VEZF1	CMD1OO|DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
150963	chr21	44318701	44319330	+	0	NA	intron (NM_001002021, intron 13 of 24)	intron (NM_001002021, intron 13 of 24)	18962	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
73300	chr15	41877801	41878200	+	0	NA	intron (NM_016642, intron 17 of 67)	intron (NM_016642, intron 17 of 67)	-11449	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
95564	chr17	36933201	36934230	+	0	NA	intron (NR_135668, intron 1 of 1)	intron (NR_135668, intron 1 of 1)	2946	NR_135670	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
14362	chr1	144070301	144070700	+	0	NA	TTS (NR_120535)	TTS (NR_120535)	-96981	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
67782	chr14	73748671	73750150	+	0	NA	intron (NM_001043318, intron 1 of 11)	AluJb|SINE|Alu	-9337	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
19974	chr1	184968801	184969000	+	0	NA	intron (NM_052966, intron 1 of 13)	MLT1J|LTR|ERVL-MaLR	5608	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
107292	chr18	44727021	44727480	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	26375	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
97352	chr17	43293271	43293430	+	0	NA	Intergenic	AluSp|SINE|Alu	3265	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
125539	chr2	15142051	15142750	+	0	NA	Intergenic	Intergenic	418934	NM_015909	51594		NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	NBAS subunit of NRZ tethering complex	protein-coding
89929	chr16	89728701	89729100	+	0	NA	intron (NR_110122, intron 5 of 10)	intron (NR_110122, intron 5 of 10)	7363	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
202044	chr6	153135571	153135930	+	0	NA	Intergenic	Intergenic	-4468	NM_012419	26575		NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G protein signaling 17	protein-coding
148153	chr20	63514451	63515180	+	0	NA	Intergenic	AluSx3|SINE|Alu	-5926	NR_148427	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
37251	chr11	14635521	14636680	+	0	NA	intron (NM_148976, intron 1 of 10)	intron (NM_148976, intron 1 of 10)	7534	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
136653	chr2	180006401	180007830	+	0	NA	promoter-TSS (NM_001376033)	promoter-TSS (NM_001376033)	-9	NM_001376033	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
167638	chr3	129603071	129603230	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	3526	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
62329	chr13	99067171	99067330	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	19444	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
23008	chr1	226182071	226182830	+	0	NA	intron (NM_022735, intron 1 of 7)	AluSz|SINE|Alu	4291	NM_022735	64746		NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
180155	chr5	1382171	1382330	+	0	NA	Intergenic	Intergenic	-2177	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
237994	chrX	134696921	134697000	+	0	NA	intron (NM_001316887, intron 2 of 3)	AluYf1|SINE|Alu	36676	NM_001316888	10761		NM_021796	ENSG00000170965	PLAC1	CT92|OOSP2B|OOSP2L	placenta enriched 1	protein-coding
143715	chr20	32256971	32257330	+	0	NA	Intergenic	AluSx|SINE|Alu	19355	NR_031726	100302183		NR_031726	ENSG00000284125	MIR1825	MIRN1825|hsa-mir-1825	microRNA 1825	ncRNA
113465	chr19	9914501	9915350	+	0	NA	intron (NM_058164, intron 1 of 5)	intron (NM_058164, intron 1 of 5)	-1124	NM_001304347	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
101358	chr17	67200601	67200950	+	0	NA	intron (NM_001330447, intron 7 of 32)	intron (NM_001330447, intron 7 of 32)	-44001	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
94622	chr17	29894351	29894450	+	0	NA	intron (NM_001282129, intron 1 of 15)	MER2|DNA|TcMar-Tigger	-35503	NM_001145053	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
111747	chr19	4364651	4365150	+	0	NA	intron (NM_001199943, intron 3 of 8)	AluSp|SINE|Alu	21338	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
136903	chr2	189592601	189593000	+	0	NA	Intergenic	Intergenic	-12014	NM_014585	30061		NM_014585	ENSG00000138449	SLC40A1	FPN|FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3	solute carrier family 40 member 1	protein-coding
149025	chr21	14581101	14581300	+	0	NA	intron (NM_001256370, intron 2 of 8)	MIR|SINE|MIR	-1002	NR_046512	100874190		NR_046512	ENSG00000223662	SAMSN1-AS1	-	SAMSN1 antisense RNA 1	ncRNA
13249	chr1	112704321	112705860	+	0	NA	intron (NM_001042678, intron 1 of 4)	intron (NM_001042678, intron 1 of 4)	1966	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
66034	chr14	58281021	58281700	+	0	NA	intron (NR_029435, intron 2 of 3)	intron (NR_029435, intron 2 of 3)	-6673	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
140056	chr2	231397071	231397730	+	0	NA	intron (NM_145236, intron 1 of 1)	intron (NM_145236, intron 1 of 1)	1690	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
37771	chr11	32168821	32169080	+	0	NA	Intergenic	Intergenic	-25038	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
156749	chr22	41829901	41830830	+	0	NA	non-coding (NR_157279, exon 2 of 2)	non-coding (NR_157279, exon 2 of 2)	-2740	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
166011	chr3	108219571	108220530	+	0	NA	intron (NM_018010, intron 1 of 10)	MER5B|DNA|hAT-Charlie	2374	NM_018010	55081		NM_018010	ENSG00000114446	IFT57	ESRRBL1|HIPPI|MHS4R2|OFD18	intraflagellar transport 57	protein-coding
126100	chr2	25876971	25877800	+	0	NA	intron (NM_018263, intron 1 of 11)	intron (NM_018263, intron 1 of 11)	1102	NM_018263	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
63743	chr14	21225171	21225730	+	0	NA	intron (NM_001077443, intron 4 of 7)	AluSx1|SINE|Alu	-18550	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
62127	chr13	95676341	95678080	+	0	NA	promoter-TSS (NR_132117)	promoter-TSS (NR_132117)	71	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
196207	chr6	42769171	42770100	+	0	NA	intron (NM_001318819, intron 1 of 13)	L2c|LINE|L2	-13861	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
157159	chr22	42889301	42889900	+	0	NA	intron (NM_001349972, intron 4 of 10)	intron (NM_001349972, intron 4 of 10)	-32327	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
46662	chr11	128712421	128712880	+	0	NA	intron (NM_001271010, intron 1 of 9)	THE1B|LTR|ERVL-MaLR	-16627	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
226606	chr9	73162971	73163950	+	0	NA	intron (NM_000700, intron 7 of 12)	intron (NM_000700, intron 7 of 12)	11595	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
135850	chr2	170818241	170819380	+	0	NA	intron (NM_000817, intron 2 of 16)	CpG-16736	1923	NM_000817	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
189126	chr5	170638701	170638980	+	0	NA	TTS (NR_136214)	TTS (NR_136214)	42630	NR_136214	105377716		NR_136214	ENSG00000253591	KCNIP1-AS1	-	KCNIP1 antisense RNA 1	ncRNA
20589	chr1	198755851	198755950	+	0	NA	intron (NM_002838, intron 32 of 32)	intron (NM_002838, intron 32 of 32)	103082	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
77120	chr15	78944351	78946330	+	0	NA	promoter-TSS (NM_004390)	promoter-TSS (NM_004390)	-242	NM_001319137	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
205998	chr7	26197201	26197690	+	0	NA	exon (NM_031243, exon 4 of 12)	exon (NM_031243, exon 4 of 12)	3301	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
233945	chrX	2504851	2505150	+	0	NA	Intergenic	Intergenic	-4024	NM_145177	207063		NM_145177	ENSG00000169084	DHRSX	CXorf11|DHRS5X|DHRS5Y|DHRSXY|DHRSY|SDR46C1|SDR7C6	dehydrogenase/reductase X-linked	protein-coding
86694	chr16	67530071	67530780	+	0	NA	intron (NM_001193523, intron 1 of 21)	CpG	1036	NM_001193523	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
12455	chr1	107803951	107804780	+	0	NA	intron (NM_006113, intron 2 of 26)	L1MA4|LINE|L1	-92858	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
226956	chr9	79812471	79813100	+	0	NA	Intergenic	Intergenic	-11745	NR_121213	101927477		NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
56946	chr12	120478521	120478780	+	0	NA	intron (NM_001037494, intron 1 of 2)	AluSx1|SINE|Alu	8808	NM_001037494	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
202450	chr6	158040321	158040580	+	0	NA	intron (NM_003898, intron 4 of 26)	intron (NM_003898, intron 4 of 26)	23357	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
109056	chr18	79809121	79809380	+	0	NA	Intergenic	CpG	-54418	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
37948	chr11	34365551	34365650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7590	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
133195	chr2	113080071	113080380	+	0	NA	Intergenic	Intergenic	7907	NM_032556	84639		NM_032556	ENSG00000136697	IL1F10	FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2	interleukin 1 family member 10	protein-coding
12937	chr1	110677001	110677730	+	0	NA	Intergenic	LFSINE_Vert|SINE|tRNA	-2425	NM_002232	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
215477	chr7	158335501	158335900	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	197113	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
151512	chr21	46425401	46427230	+	0	NA	intron (NM_006031, intron 33 of 46)	AluSg7|SINE|Alu	-32576	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
111592	chr19	4088601	4089960	+	0	NA	Intergenic	Intergenic	-22381	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
24448	chr1	243793601	243793800	+	0	NA	intron (NM_005465, intron 2 of 13)	AluJr|SINE|Alu	49582	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
105148	chr17	82248751	82248850	+	0	NA	intron (NM_139062, intron 8 of 9)	intron (NM_139062, intron 8 of 9)	12132	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
36579	chr11	6672051	6672150	+	0	NA	Intergenic	Intergenic	11240	NM_022061	63875		NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26|bL17m	mitochondrial ribosomal protein L17	protein-coding
26725	chr10	22676301	22676880	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	37518	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
7215	chr1	32301971	32302130	+	0	NA	intron (NM_004964, intron 1 of 13)	L2c|LINE|L2	9967	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
81090	chr16	4353671	4353830	+	0	NA	TTS (NM_001201472).2	TTS (NM_001201472).2	-2429	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
127796	chr2	44238251	44238550	+	0	NA	Intergenic	Intergenic	-37080	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
183339	chr5	76740321	76740580	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	24324	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
152057	chr22	19716371	19716700	+	0	NA	promoter-TSS (NR_037611)	promoter-TSS (NR_037611)	-685	NR_037611	100526833		NR_037611	ENSG00000284874	SEPT5-GP1BB	GP1BB|GPIb-beta|GPIbB	SEPT5-GP1BB readthrough	ncRNA
59751	chr13	30047301	30047930	+	0	NA	Intergenic	Intergenic	61260	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
51373	chr12	51848471	51848630	+	0	NA	non-coding (NR_135803, exon 1 of 3)	non-coding (NR_135803, exon 1 of 3)	168	NM_001384996	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
158582	chr3	4711021	4711630	+	0	NA	intron (NM_002222, intron 37 of 57)	intron (NM_002222, intron 37 of 57)	40265	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
212879	chr7	130873271	130873430	+	0	NA	Intergenic	MIRb|SINE|MIR	3460	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
61630	chr13	73767121	73768330	+	0	NA	intron (NM_007249, intron 5 of 7)	intron (NM_007249, intron 5 of 7)	203481	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
197093	chr6	56955971	56956130	+	0	NA	intron (NM_001318539, intron 1 of 3)	intron (NM_001318539, intron 1 of 3)	943	NM_152731	221336		NM_152731	ENSG00000151917	BEND6	C6orf65	BEN domain containing 6	protein-coding
225005	chr9	33123201	33123800	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	14808	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
194318	chr6	32834901	32835100	+	0	NA	intron (NM_000544, intron 5 of 11)	L1M3|LINE|L1	3739	NM_001290043	6891		NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
224403	chr9	14585751	14586080	+	0	NA	Intergenic	Intergenic	-53838	NM_001369462	4781		NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
81065	chr16	4331601	4331800	+	0	NA	intron (NM_001318918, intron 2 of 7).2	AluJr|SINE|Alu	-3360	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
18688	chr1	167413151	167413250	+	0	NA	intron (NM_001198786, intron 14 of 14)	intron (NM_001198786, intron 14 of 14)	84130	NM_001198783	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
66817	chr14	64748451	64748750	+	0	NA	3' UTR (NM_001024858, exon 35 of 35)	3' UTR (NM_001024858, exon 35 of 35)	37086	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
51425	chr12	52020071	52020230	+	0	NA	Intergenic	MIRb|SINE|MIR	-2682	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
186988	chr5	139708271	139708700	+	0	NA	Intergenic	L2a|LINE|L2	33042	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
183033	chr5	73230501	73230700	+	0	NA	Intergenic	CpG	-28639	NR_134291	340090		NR_134291	ENSG00000287090	LOC340090	-	uncharacterized LOC340090	ncRNA
195689	chr6	38637201	38637630	+	0	NA	intron (NM_052893, intron 1 of 11)	intron (NM_052893, intron 1 of 11)	2514	NM_052893	114781		NM_052893	ENSG00000183826	BTBD9	dJ322I12.1	BTB domain containing 9	protein-coding
17790	chr1	159784371	159784730	+	0	NA	Intergenic	Intergenic	3588	NM_001319659	54935		NM_017823	ENSG00000158716	DUSP23	DUSP25|LDP-3|LDP3|MOSP|VHZ	dual specificity phosphatase 23	protein-coding
119854	chr19	41426251	41426350	+	0	NA	exon (NM_198540, exon 3 of 3)	exon (NM_198540, exon 3 of 3)	1693	NM_001385648	374907		NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
129801	chr2	71416841	71417680	+	0	NA	intron (NM_014497, intron 20 of 27)	L1HS|LINE|L1	-36301	NM_001130979	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
188782	chr5	157743351	157745080	+	0	NA	intron (NM_173491, intron 1 of 3)	CpG	503	NM_173491	134353		NM_173491	ENSG00000155858	LSM11	AGS8	LSM11, U7 small nuclear RNA associated	protein-coding
177808	chr4	123423151	123423250	+	0	NA	Intergenic	Intergenic	23660	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
88237	chr16	82230071	82230300	+	0	NA	Intergenic	Intergenic	-59961	NM_005792	10200		NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
153263	chr22	24134001	24134900	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-47037	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
179761	chr5	261651	261750	+	0	NA	Intergenic	CpG	9824	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
2649	chr1	10427901	10428830	+	0	NA	Intergenic	AluJb|SINE|Alu	-2068	NM_198544	100526739		NM_198544	ENSG00000251503	CENPS-CORT	APITD1|APITD1-CORT|CENP-S|CENPS|FAAP16|MHF1	CENPS-CORT readthrough	protein-coding
47366	chr12	2294771	2295130	+	0	NA	intron (NM_199460, intron 3 of 49)	intron (NM_199460, intron 3 of 49)	25174	NR_046769	100874370		NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
43640	chr11	85484001	85484230	+	0	NA	intron (NM_001351274, intron 3 of 26)	LSU-rRNA_Hsa|rRNA|rRNA	143229	NM_001142699	1740		NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
127768	chr2	44139771	44139930	+	0	NA	Intergenic	Intergenic	-28953	NM_177969	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
82639	chr16	19086271	19086880	+	0	NA	Intergenic	CpG	17928	NM_001370491	10229		NM_016138	ENSG00000167186	COQ7	CAT5|CLK-1|CLK1|COQ10D8|HMNR9	coenzyme Q7, hydroxylase	protein-coding
23173	chr1	226797351	226797700	+	0	NA	Intergenic	Intergenic	-58350	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
26917	chr10	26467151	26467930	+	0	NA	intron (NM_019043, intron 2 of 14)	AluJr|SINE|Alu	29199	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
195560	chr6	37489751	37490650	+	0	NA	intron (NM_138493, intron 1 of 3)	intron (NM_138493, intron 1 of 3)	9693	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
181712	chr5	50667201	50669180	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	776	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
210340	chr7	99507601	99507800	+	0	NA	intron (NM_145102, intron 2 of 6)	AluJo|SINE|Alu	1695	NM_001318084	23660		NM_014569	ENSG00000196652	ZKSCAN5	ZFP-95|ZFP95|ZNF914|ZSCAN37	zinc finger with KRAB and SCAN domains 5	protein-coding
45046	chr11	117044421	117044750	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	53843	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
179490	chr4	184600851	184601550	+	0	NA	intron (NR_131967, intron 1 of 1)	L1PA7|LINE|L1	23672	NR_131965	105377586		NR_131965	ENSG00000254233	LINC02365	LVCAT8	long intergenic non-protein coding RNA 2365	ncRNA
17765	chr1	159030321	159031080	+	0	NA	intron (NM_001376587, intron 6 of 11)	L1PBa|LINE|L1	20793	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
64385	chr14	24150001	24150200	+	0	NA	exon (NM_017999, exon 7 of 21)	exon (NM_017999, exon 7 of 21)	2602	NM_017999	55072		NM_017999	ENSG00000092098	RNF31	HOIP|IMD115|Paul|ZIBRA	ring finger protein 31	protein-coding
210875	chr7	101149201	101149400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5176	NM_001283	1174		NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A	adaptor related protein complex 1 subunit sigma 1	protein-coding
84807	chr16	31071401	31071600	+	0	NA	intron (NM_024706, intron 1 of 2)	AluJr4|SINE|Alu	2002	NM_001172668	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
60651	chr13	42573121	42573380	+	0	NA	promoter-TSS (NM_003701)	promoter-TSS (NM_003701)	-902	NM_003701	8600		NM_003701	ENSG00000120659	TNFSF11	CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf	TNF superfamily member 11	protein-coding
44079	chr11	95682651	95682950	+	0	NA	Intergenic	Intergenic	106982	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
62099	chr13	94711221	94712080	+	0	NA	exon (NM_007084, exon 1 of 1)	exon (NM_007084, exon 1 of 1)	895	NM_007084	11166		NM_007084	ENSG00000125285	SOX21	SOX25	SRY-box transcription factor 21	protein-coding
197399	chr6	73508751	73509200	+	0	NA	3' UTR (NM_001123226, exon 13 of 13)	3' UTR (NM_001123226, exon 13 of 13)	9463	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
94755	chr17	30815171	30815330	+	0	NA	intron (NM_015986, intron 1 of 7)	AluSx1|SINE|Alu	9442	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
5179	chr1	24941751	24942300	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-11749	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
78693	chr15	96330301	96331280	+	0	NA	promoter-TSS (NM_021005)	promoter-TSS (NM_021005)	90	NM_021005	7026		NM_021005	ENSG00000185551	NR2F2	ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SRXX5|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding
165780	chr3	105785921	105786480	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	81391	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
232276	chr9	134431921	134432180	+	0	NA	intron (NM_001291921, intron 7 of 8)	intron (NM_001291921, intron 7 of 8)	25490	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
99169	chr17	49404201	49405180	+	0	NA	3' UTR (NM_002634, exon 7 of 7)	3' UTR (NM_002634, exon 7 of 7)	10168	NM_001281496	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
48930	chr12	12712701	12712900	+	0	NA	Intergenic	AluJr|SINE|Alu	-4568	NM_004064	1027		NM_004064	ENSG00000111276	CDKN1B	CDKN4|KIP1|MEN1B|MEN4|P27KIP1	cyclin dependent kinase inhibitor 1B	protein-coding
10863	chr1	77978001	77978600	+	0	NA	promoter-TSS (NM_001317102)	promoter-TSS (NM_001317102)	772	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
12306	chr1	100924121	100924550	+	0	NA	intron (NM_133496, intron 8 of 10)	L2b|LINE|L2	28245	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
114158	chr19	11345321	11345580	+	0	NA	intron (NM_001321113, intron 2 of 3)	intron (NM_001321113, intron 2 of 3)	818	NM_001321114	374882		NM_033408	ENSG00000105518	TMEM205	UNQ501	transmembrane protein 205	protein-coding
35024	chr11	557801	558380	+	0	NA	intron (NM_173573, intron 4 of 13).2	intron (NM_173573, intron 4 of 13).2	-1172	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
118676	chr19	37780901	37781100	+	0	NA	Intergenic	L1MA7|LINE|L1	-1410	NM_001172691	126231		NM_152360	ENSG00000189144	ZNF573	-	zinc finger protein 573	protein-coding
175932	chr4	80365921	80366350	+	0	NA	intron (NM_001206997, intron 2 of 6)	intron (NM_001206997, intron 2 of 6)	30405	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
79266	chr16	502251	502750	+	0	NA	intron (NM_001370401, intron 7 of 14)	intron (NM_001370401, intron 7 of 14)	24907	NR_024121	64493		NR_024121		LINC00235	C16orf10|LA16c-356B8.1|NCRNA00235	long intergenic non-protein coding RNA 235	ncRNA
218170	chr8	41960751	41961400	+	0	NA	intron (NM_001305878, intron 8 of 13)	L2a|LINE|L2	-64334	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
221842	chr8	128239571	128239730	+	0	NA	Intergenic	LTR33B|LTR|ERVL	89534	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
159279	chr3	12966671	12968300	+	0	NA	5' UTR (NM_014869, exon 1 of 14)	5' UTR (NM_014869, exon 1 of 14)	245	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
41733	chr11	66668671	66669730	+	0	NA	TTS (NM_001198844)	TTS (NM_001198844)	8687	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
186549	chr5	138457651	138458030	+	0	NA	Intergenic	L2c|LINE|L2	-7639	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
40979	chr11	65380321	65381000	+	0	NA	intron (NM_001278251, intron 4 of 9)	intron (NM_001278251, intron 4 of 9)	1311	NM_001352384	283130		NM_182556	ENSG00000162241	SLC25A45	-	solute carrier family 25 member 45	protein-coding
103691	chr17	78809471	78809830	+	0	NA	intron (NR_169585, intron 13 of 19)	AluJo|SINE|Alu	-27308	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
98984	chr17	48736951	48737250	+	0	NA	Intergenic	Intergenic	-8350	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
205966	chr7	26163521	26163780	+	0	NA	intron (NM_004289, intron 1 of 3)	intron (NM_004289, intron 1 of 3)	11452	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
42705	chr11	72671071	72671700	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	-2321	NM_001146209	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
161893	chr3	45952801	45953000	+	0	NA	intron (NM_024513, intron 14 of 17)	intron (NM_024513, intron 14 of 17)	9436	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
6351	chr1	27772661	27774380	+	0	NA	intron (NM_177424, intron 1 of 8)	CpG	301	NM_177424	23673		NM_177424	ENSG00000117758	STX12	STX13|STX14	syntaxin 12	protein-coding
50524	chr12	47836521	47836780	+	0	NA	Intergenic	AluJr|SINE|Alu	-16747	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
195717	chr6	39086371	39086530	+	0	NA	non-coding (NR_136563, exon 14 of 14)	non-coding (NR_136563, exon 14 of 14)	12136	NR_162114	113218508		NR_162114		MIR9983	-	microRNA 9983	ncRNA
129665	chr2	70263871	70264230	+	0	NA	intron (NM_016297, intron 3 of 5)	AluJb|SINE|Alu	5913	NM_016297	51449		NM_016297	ENSG00000116005	PCYOX1	PCL1	prenylcysteine oxidase 1	protein-coding
10203	chr1	62082721	62083000	+	0	NA	intron (NM_176877, intron 32 of 42)	intron (NM_176877, intron 32 of 42)	-4004	NR_036059	100422946		NR_036059	ENSG00000283690	MIR3116-2	-	microRNA 3116-2	ncRNA
123149	chr19	52171041	52172330	+	0	NA	promoter-TSS (NM_001102657)	promoter-TSS (NM_001102657)	-64	NM_001102657	162962		NM_001102657	ENSG00000196267	ZNF836	-	zinc finger protein 836	protein-coding
44995	chr11	116982121	116982380	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	116178	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
62975	chr13	112295201	112295400	+	0	NA	Intergenic	Intergenic	-18167	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
64418	chr14	24181351	24181750	+	0	NA	non-coding (NR_051979, exon 28 of 30)	non-coding (NR_051979, exon 28 of 30)	7266	NM_024658	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
153700	chr22	29271071	29271230	+	0	NA	intron (NM_001163286, intron 1 of 15)	intron (NM_001163286, intron 1 of 15)	2882	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
49507	chr12	25346451	25346830	+	0	NA	Intergenic	Intergenic	-95711	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
235102	chrX	40476621	40477280	+	0	NA	Intergenic	Intergenic	-104020	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
178190	chr4	142398551	142398850	+	0	NA	intron (NM_001385379, intron 2 of 21)	intron (NM_001385379, intron 2 of 21)	4433	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
79806	chr16	1405801	1406400	+	0	NA	intron (NM_001372107, intron 2 of 14)	intron (NM_001372107, intron 2 of 14)	8604	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
60709	chr13	44089501	44089730	+	0	NA	Intergenic	Intergenic	-20934	NR_104065	101929212		NR_104064	ENSG00000227258	SMIM2-AS1	C13orf44-AS1|C3orf81-AS1	SMIM2 antisense RNA 1	ncRNA
112076	chr19	5322151	5322680	+	0	NA	intron (NM_130853, intron 1 of 28)	intron (NM_130853, intron 1 of 28)	18397	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
226852	chr9	78010551	78011050	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	21011	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
89423	chr16	88920901	88921480	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	-18081	NR_168285	100129697		NM_001290330		LOC100129697	-	uncharacterized LOC100129697	ncRNA
123092	chr19	51438871	51439430	+	0	NA	Intergenic	Intergenic	19304	NM_014442	27181		NM_014442	ENSG00000105366	SIGLEC8	SAF2|SIGLEC-8|SIGLEC8L	sialic acid binding Ig like lectin 8	protein-coding
26847	chr10	24851701	24851900	+	0	NA	intron (NM_020200, intron 7 of 8)	intron (NM_020200, intron 7 of 8)	100806	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
59063	chr13	20723401	20723630	+	0	NA	TTS (NM_001385225)	TTS (NM_001385225)	19816	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
63294	chr13	113978501	113979230	+	0	NA	3' UTR (NM_007368, exon 24 of 24)	3' UTR (NM_007368, exon 24 of 24)	-4789	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
44960	chr11	116835421	116836700	+	0	NA	promoter-TSS (NR_126362)	promoter-TSS (NR_126362)	-57	NR_126362	104326055		NR_126362	ENSG00000235910	APOA1-AS	-	APOA1 antisense RNA	ncRNA
168268	chr3	141456051	141456150	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-30927	NM_001303246	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
181559	chr5	43134751	43135250	+	0	NA	intron (NM_001330717, intron 3 of 7)	intron (NM_001330717, intron 3 of 7)	13435	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
143701	chr20	32203871	32204430	+	0	NA	intron (NM_002657, intron 1 of 2)	intron (NM_002657, intron 1 of 2)	3593	NM_002657	5326		NM_002657	ENSG00000126003	PLAGL2	ZNF900	PLAG1 like zinc finger 2	protein-coding
7130	chr1	32197051	32197800	+	0	NA	3' UTR (NM_001376857, exon 10 of 10)	3' UTR (NM_001376857, exon 10 of 10)	-3170	NM_001301011	79140		NM_024296	ENSG00000160050	CCDC28B	-	coiled-coil domain containing 28B	protein-coding
209859	chr7	90347921	90348200	+	0	NA	intron (NM_033107, intron 1 of 9)	AluJr|SINE|Alu	1344	NM_001042717	85865		NM_033107	ENSG00000105793	GTPBP10	ObgH2|UG0751c10	GTP binding protein 10	protein-coding
139857	chr2	230582901	230583250	+	0	NA	Intergenic	Intergenic	117454	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
89375	chr16	88792951	88793050	+	0	NA	Intergenic	Intergenic	-7780	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
164795	chr3	69353551	69353650	+	0	NA	intron (NM_015123, intron 1 of 22)	intron (NM_015123, intron 1 of 22)	32488	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
141930	chr20	1222151	1222450	+	0	NA	Intergenic	L1PA5|LINE|L1	-3744	NM_001384357	642636		NM_001136566	ENSG00000244588	RAD21L1	RAD21L|dJ545L17.2	RAD21 cohesin complex component like 1	protein-coding
121168	chr19	46412121	46412380	+	0	NA	exon (NM_032040, exon 1 of 1)	exon (NM_032040, exon 1 of 1)	1314	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
76619	chr15	75451601	75453100	+	0	NA	promoter-TSS (NM_015477)	promoter-TSS (NM_015477)	-660	NM_001145358	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
115128	chr19	14372101	14373300	+	0	NA	Intergenic	Intergenic	-8444	NM_001784	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
23713	chr1	231806671	231806930	+	0	NA	intron (NM_001164538, intron 8 of 10)	intron (NM_001164538, intron 8 of 10)	11717	NR_002227	27184		NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2	ncRNA
40095	chr11	62795901	62796500	+	0	NA	intron (NM_006362, intron 15 of 20)	intron (NM_006362, intron 15 of 20)	-3429	NR_106769	102465257		NR_106769	ENSG00000274066	MIR6514	hsa-mir-6514|mir-6514	microRNA 6514	ncRNA
192971	chr6	27875071	27875430	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1716	NM_003546	8368		NM_003546	ENSG00000275126	H4C13	H4-16|H4.k|H4/k|H4C1|H4C11|H4C12|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4FK|HIST1H4L	H4 clustered histone 13	protein-coding
672	chr1	1377651	1378130	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	-2683	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
179083	chr4	168317151	168317900	+	0	NA	intron (NM_017631, intron 1 of 37)	intron (NM_017631, intron 1 of 37)	1227	NM_017631	55601		NM_017631	ENSG00000137628	DDX60	-	DExD/H-box helicase 60	protein-coding
83142	chr16	23182321	23183300	+	0	NA	promoter-TSS (NM_001039)	promoter-TSS (NM_001039)	65	NM_001039	6340		NM_001039	ENSG00000166828	SCNN1G	BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|PHA1B3|SCNEG	sodium channel epithelial 1 subunit gamma	protein-coding
84267	chr16	30051751	30052180	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-1125	NM_001365304	112694756		NM_001365304	ENSG00000285043	LOC112694756	ALDA|ALDOA	uncharaterized LOC112694756	protein-coding
170895	chr3	193742751	193742850	+	0	NA	Intergenic	L1MC2|LINE|L1	101209	NR_146718	105374285		NR_146718		LINC02038	-	long intergenic non-protein coding RNA 2038	ncRNA
219470	chr8	73350021	73350480	+	0	NA	intron (NR_125388, intron 1 of 5)	AluSc8|SINE|Alu	6211	NR_125388	101926926		NR_125388	ENSG00000250295	RDH10-AS1	-	RDH10 antisense RNA 1	ncRNA
40060	chr11	62732751	62733130	+	0	NA	intron (NM_173810, intron 1 of 2)	AluSc8|SINE|Alu	4454	NM_173810	283237		NM_173810	ENSG00000162222	TTC9C	-	tetratricopeptide repeat domain 9C	protein-coding
223999	chr9	2156121	2156780	+	0	NA	intron (NM_003070, intron 27 of 33)	AluSp|SINE|Alu	-1212	NM_001289398	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
113888	chr19	10675501	10675700	+	0	NA	intron (NM_153464, intron 4 of 17)	intron (NM_153464, intron 4 of 17)	21254	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
11398	chr1	89684901	89685100	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	51880	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
187112	chr5	140404671	140405330	+	0	NA	intron (NM_020690, intron 1 of 35)	(TG)n|Simple_repeat|Simple_repeat	3167	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
33954	chr10	124636521	124637500	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-67018	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
200577	chr6	136292351	136292680	+	0	NA	Intergenic	Intergenic	-2664	NM_001077440	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
163324	chr3	50368951	50370230	+	0	NA	intron (NM_006030, intron 23 of 37)	intron (NM_006030, intron 23 of 37)	4227	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
130579	chr2	85830701	85830930	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	15685	NR_038888	284950		NR_038888		LOC284950	-	uncharacterized LOC284950	ncRNA
39749	chr11	61831651	61831950	+	0	NA	intron (NM_004265, intron 1 of 11)	intron (NM_004265, intron 1 of 11)	3500	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
151931	chr22	19037251	19037550	+	0	NA	non-coding (NR_033674, exon 9 of 9)	non-coding (NR_033674, exon 9 of 9)	10975	NR_024157	25786		NR_024157	ENSG00000273311	DGCR11	DGS-D	DiGeorge syndrome critical region gene 11	ncRNA
134820	chr2	148539221	148539480	+	0	NA	Intergenic	Intergenic	-105401	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
148528	chr20	64104851	64105530	+	0	NA	3' UTR (NM_005286, exon 2 of 2)	3' UTR (NM_005286, exon 2 of 2)	2375	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
221690	chr8	126559571	126560080	+	0	NA	Intergenic	Intergenic	-1347	NR_156466	157638		NM_174911	ENSG00000168672	LRATD2	BCMP101|FAM84B|NSE2	LRAT domain containing 2	protein-coding
1028	chr1	1871151	1872050	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	19487	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
175497	chr4	73258011	73260200	+	0	NA	promoter-TSS (NM_198889)	promoter-TSS (NM_198889)	-307	NM_032217	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
56816	chr12	120218151	120218450	+	0	NA	intron (NM_001080855, intron 6 of 11)	AluJo|SINE|Alu	17009	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
12044	chr1	98048171	98048750	+	0	NA	intron (NR_046105, intron 1 of 4)	intron (NR_046105, intron 1 of 4)	1233	NR_046105	400765		NM_001001688	ENSG00000225206	MIR137HG	-	MIR137 host gene	ncRNA
121196	chr19	46542601	46543030	+	0	NA	intron (NM_001370550, intron 1 of 2)	intron (NM_001370550, intron 1 of 2)	-46948	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
199567	chr6	118896251	118897630	+	0	NA	intron (NM_001378365, intron 7 of 7)	AluJo|SINE|Alu	2788	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
179389	chr4	183643051	183643550	+	0	NA	intron (NM_152682, intron 6 of 6)	AluSz|SINE|Alu	15885	NM_152682	201965		NM_152682	ENSG00000182552	RWDD4	FAM28A|RWDD4A	RWD domain containing 4	protein-coding
169787	chr3	172809171	172809500	+	0	NA	intron (NM_001349096, intron 22 of 25)	intron (NM_001349096, intron 22 of 25)	58333	NM_001349096	1894		NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
38343	chr11	44566651	44566950	+	0	NA	intron (NM_002231, intron 1 of 9)	intron (NM_002231, intron 1 of 9)	1137	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
158657	chr3	5021621	5022730	+	0	NA	Intergenic	Intergenic	-42214	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
197480	chr6	75597051	75597730	+	0	NA	Intergenic	ORSL|DNA|hAT-Tip100	-4119	NM_001304792	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
184048	chr5	91381601	91382150	+	0	NA	intron (NR_027435, intron 1 of 2)	intron (NR_027435, intron 1 of 2)	1442	NM_001329672	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
192308	chr6	21593321	21594130	+	0	NA	promoter-TSS (NM_003107)	promoter-TSS (NM_003107)	-26	NM_003107	6659		NM_003107	ENSG00000124766	SOX4	CSS10|EVI16	SRY-box transcription factor 4	protein-coding
225884	chr9	39674321	39674580	+	0	NA	Intergenic	Intergenic	135709	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
222413	chr8	134497591	134498700	+	0	NA	intron (NM_001174158, intron 13 of 13)	intron (NM_001174158, intron 13 of 13)	-99926	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
87830	chr16	75629301	75629500	+	0	NA	intron (NM_001378148, intron 12 of 13)	intron (NM_001378148, intron 12 of 13)	-6119	NM_001324448	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
188426	chr5	154223121	154223580	+	0	NA	intron (NM_198321, intron 1 of 11)	MIRb|SINE|MIR	32617	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
2354	chr1	9280371	9281250	+	0	NA	Intergenic	Intergenic	-12084	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
223124	chr8	143474101	143474400	+	0	NA	intron (NM_015117, intron 5 of 11)	intron (NM_015117, intron 5 of 11)	31998	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
172899	chr4	3482651	3483100	+	0	NA	intron (NM_001301071, intron 4 of 9)	intron (NM_001301071, intron 4 of 9)	-1669	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
11156	chr1	86913451	86915100	+	0	NA	promoter-TSS (NM_012262)	promoter-TSS (NM_012262)	90	NM_203341	9403		NM_004261	ENSG00000183291	SELENOF	SEP15	selenoprotein F	protein-coding
12552	chr1	108668021	108668480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6724	NM_144584	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
158907	chr3	9951451	9953380	+	0	NA	promoter-TSS (NR_134900)	promoter-TSS (NR_134900)	0	NM_001318871	285368		NM_207351	ENSG00000163704	PRRT3	-	proline rich transmembrane protein 3	protein-coding
143639	chr20	31846051	31846980	+	0	NA	promoter-TSS (NM_004118)	promoter-TSS (NM_004118)	-911	NM_004118	2307		NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
167591	chr3	129561251	129561880	+	0	NA	intron (NM_015103, intron 29 of 35)	intron (NM_015103, intron 29 of 35)	13180	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
71383	chr14	105507221	105507680	+	0	NA	Intergenic	Intergenic	16201	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
132575	chr2	106501171	106501330	+	0	NA	intron (NM_001349727, intron 3 of 5)	L1ME3G|LINE|L1	13886	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
200320	chr6	133854851	133855150	+	0	NA	intron (NR_109982, intron 1 of 8)	intron (NR_109982, intron 1 of 8)	33853	NR_027030	154089		NM_153224		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
151759	chr22	17980521	17981300	+	0	NA	promoter-TSS (NR_030378)	promoter-TSS (NR_030378)	51	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
66947	chr14	65732121	65732380	+	0	NA	intron (NM_001371536, intron 10 of 11)	intron (NM_001371536, intron 10 of 11)	261148	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
193020	chr6	28349781	28350880	+	0	NA	5' UTR (NM_001242894, exon 2 of 7)	5' UTR (NM_001242894, exon 2 of 7)	383	NM_001242895	80317		NM_024493	ENSG00000189298	ZKSCAN3	ZF47|ZFP306|ZNF306|ZNF309|ZSCAN13|ZSCAN35|Zfp47|dJ874C20.1|dJ874C20.1.|zfp-47	zinc finger with KRAB and SCAN domains 3	protein-coding
205862	chr7	24971271	24972030	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	8528	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
86160	chr16	57760421	57760980	+	0	NA	intron (NR_134678, intron 16 of 18)	intron (NR_134678, intron 16 of 18)	11652	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
37111	chr11	13294721	13295250	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	17195	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
199710	chr6	125300251	125300350	+	0	NA	intron (NM_016063, intron 2 of 5)	intron (NM_016063, intron 2 of 5)	1667	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
224291	chr9	6428601	6430130	+	0	NA	intron (NR_046386, intron 2 of 16)	intron (NR_046386, intron 2 of 16)	16166	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
196513	chr6	43723871	43724300	+	0	NA	Intergenic	Intergenic	-36273	NM_001193343	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
102874	chr17	76511151	76511250	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	-9773	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
167417	chr3	129014621	129015000	+	0	NA	intron (NM_024768, intron 2 of 7)	intron (NM_024768, intron 2 of 7)	-10808	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
59609	chr13	27791101	27791650	+	0	NA	Intergenic	Intergenic	-1108	NM_145657	219409		NM_145657	ENSG00000169840	GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
86408	chr16	66753051	66753430	+	0	NA	non-coding (NR_133569, exon 2 of 2)	non-coding (NR_133569, exon 2 of 2)	-1412	NM_001323955	1783		NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding
8332	chr1	40172071	40172730	+	0	NA	intron (NM_012421, intron 1 of 7)	intron (NM_012421, intron 1 of 7)	11013	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
168296	chr3	141520321	141520580	+	0	NA	intron (NM_006506, intron 3 of 23)	intron (NM_006506, intron 3 of 23)	33423	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
175511	chr4	74159601	74159800	+	0	NA	intron (NM_001144978, intron 1 of 7)	intron (NM_001144978, intron 1 of 7)	1582	NM_001004346	441024		NM_001004346	ENSG00000163738	MTHFD2L	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like	protein-coding
51522	chr12	52251651	52252150	+	0	NA	intron (NR_146088, intron 8 of 8)	MER58A|DNA|hAT-Charlie	-4452	NR_146274	109729127		NR_146274	ENSG00000257671	KRT7-AS	-	KRT7 antisense RNA 1	ncRNA
45304	chr11	118150271	118150430	+	0	NA	intron (NM_174934, intron 1 of 4)	intron (NM_174934, intron 1 of 4)	2473	NM_001142348	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
132462	chr2	105872151	105872900	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	20678	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
22875	chr1	225780721	225781400	+	0	NA	intron (NM_001130440, intron 1 of 3)	intron (NM_001130440, intron 1 of 3)	3234	NM_003133	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
169619	chr3	171266271	171267230	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-159991	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
52126	chr12	54203521	54204150	+	0	NA	Intergenic	Intergenic	-14841	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
86195	chr16	57988851	57989230	+	0	NA	TTS (NM_199046)	TTS (NM_199046)	-10563	NM_001330568	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
176364	chr4	88525301	88525500	+	0	NA	TTS (NR_134662)	TTS (NR_134662)	1557	NM_001375483	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
175836	chr4	78610501	78610800	+	0	NA	TTS (NM_005139)	TTS (NM_005139)	-35344	NR_038308	100505702		NR_038303		LINC01094	CTEPHA1	long intergenic non-protein coding RNA 1094	ncRNA
235474	chrX	46628571	46628930	+	0	NA	intron (NM_001257291, intron 14 of 16)	intron (NM_001257291, intron 14 of 16)	54985	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
221946	chr8	129924001	129924400	+	0	NA	intron (NM_001353279, intron 2 of 13)	AluJo|SINE|Alu	15611	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
183500	chr5	79464721	79465050	+	0	NA	intron (NM_001277077, intron 1 of 5)	intron (NM_001277077, intron 1 of 5)	48951	NM_001277077	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
37818	chr11	33038671	33040100	+	0	NA	promoter-TSS (NM_018393)	promoter-TSS (NM_018393)	-187	NM_018393	55346		NM_018393	ENSG00000176148	TCP11L1	dJ85M6.3	t-complex 11 like 1	protein-coding
29015	chr10	63563551	63563850	+	0	NA	intron (NM_001001330, intron 1 of 7)	L1MC3|LINE|L1	-41810	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
226780	chr9	76577551	76578580	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	77432	NM_001097636	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
40325	chr11	63912701	63913380	+	0	NA	intron (NM_173587, intron 8 of 11)	intron (NM_173587, intron 8 of 11)	4124	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
130546	chr2	85684401	85685050	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-9633	NM_012483	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
127925	chr2	46369751	46370050	+	0	NA	exon (NM_001430, exon 7 of 16)	exon (NM_001430, exon 7 of 16)	24267	NR_146999	105374582		NR_146999	ENSG00000228100	LINC01820	-	long intergenic non-protein coding RNA 1820	ncRNA
8710	chr1	42324601	42324800	+	0	NA	intron (NM_001198851, intron 1 of 14)	Tigger3c|DNA|TcMar-Tigger	10255	NM_001198851	22887		NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
229583	chr9	123356101	123356300	+	0	NA	promoter-TSS (NM_173689)	promoter-TSS (NM_173689)	3	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
61510	chr13	52851501	52851700	+	0	NA	Intergenic	CpG	-2960	NM_032949	5100		NM_002590	ENSG00000136099	PCDH8	ARCADLIN|PAPC	protocadherin 8	protein-coding
202826	chr6	159720571	159721250	+	0	NA	intron (NM_001322817, intron 3 of 7)	AluSx3|SINE|Alu	6040	NM_001322820	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
139678	chr2	227164021	227164430	+	0	NA	promoter-TSS (NM_000092)	promoter-TSS (NM_000092)	-20	NM_000092	1286		NM_000092	ENSG00000081052	COL4A4	ATS2|BFH|BFH1|CA44	collagen type IV alpha 4 chain	protein-coding
208644	chr7	73004551	73004650	+	0	NA	intron (NR_040582, intron 1 of 8)	AluY|SINE|Alu	1343	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
131643	chr2	97333851	97333950	+	0	NA	Intergenic	Intergenic	49965	NR_130704	100506123		NR_040097		APPAT	LINC02969	atherosclerotic plaque pathogenesis associated transcript	ncRNA
170722	chr3	188060871	188061500	+	0	NA	Intergenic	Intergenic	-84778	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
40473	chr11	64233271	64233430	+	0	NA	intron (NM_001307980, intron 4 of 4)	AluSx1|SINE|Alu	-1234	NM_001243733	7423		NM_003377	ENSG00000173511	VEGFB	VEGFL|VRF	vascular endothelial growth factor B	protein-coding
306	chr1	969321	969850	+	0	NA	intron (NM_001160184, intron 2 of 14)	intron (NM_001160184, intron 2 of 14)	3103	NM_001160184	84069		NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
24950	chr10	1541271	1541830	+	0	NA	intron (NR_033387, intron 1 of 1)	CpG	-5210	NR_152792	642394		NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168	ADARB2 antisense RNA 1	ncRNA
18332	chr1	161192201	161194150	+	0	NA	intron (NM_005099, intron 7 of 8)	intron (NM_005099, intron 7 of 8)	-4242	NM_001377298	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
100453	chr17	61398601	61399450	+	0	NA	promoter-TSS (NM_005994)	promoter-TSS (NM_005994)	581	NR_125749	103689912		NR_125749	ENSG00000267280	TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
47381	chr12	2691601	2692500	+	0	NA	promoter-TSS (NR_045725)	promoter-TSS (NR_045725)	-893	NR_045725	100652846		NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	ncRNA
198594	chr6	107704451	107705230	+	0	NA	3' UTR (NM_198081, exon 8 of 8)	3' UTR (NM_198081, exon 8 of 8)	27310	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
135426	chr2	161159971	161161530	+	0	NA	intron (NM_001199135, intron 1 of 7)	CpG	322	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
2884	chr1	11644501	11644900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9707	NM_183412	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
117147	chr19	19317221	19318030	+	0	NA	intron (NM_172231, intron 1 of 13)	AluJr|SINE|Alu	2884	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
37450	chr11	18104921	18105180	+	0	NA	intron (NM_138421, intron 1 of 11)	MIRb|SINE|MIR	1032	NM_138421	113174		NM_138421	ENSG00000166788	SAAL1	SPACIA1	serum amyloid A like 1	protein-coding
212942	chr7	130936821	130937400	+	0	NA	Intergenic	Intergenic	23646	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
106348	chr18	13139601	13139800	+	0	NA	Intergenic	Intergenic	-77982	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207478	chr7	44630971	44632250	+	0	NA	intron (NM_001363523, intron 2 of 23)	intron (NM_001363523, intron 2 of 23)	24983	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
164822	chr3	70982601	70983300	+	0	NA	intron (NM_001244810, intron 14 of 20)	intron (NM_001244810, intron 14 of 20)	81974	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
11028	chr1	84930421	84930980	+	0	NA	intron (NM_153259, intron 12 of 13)	intron (NM_153259, intron 12 of 13)	-37494	NM_012152	23566		NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
10726	chr1	75842571	75842750	+	0	NA	intron (NM_002440, intron 7 of 19)	LTR13|LTR|ERVK	45778	NM_002440	4438		NM_002440	ENSG00000057468	MSH4	ASG|POF20|SPGF2	mutS homolog 4	protein-coding
116757	chr19	18484271	18484680	+	0	NA	intron (NM_006532, intron 1 of 11)	AluSx1|SINE|Alu	37595	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
220299	chr8	98116471	98117880	+	0	NA	promoter-TSS (NM_005836)	promoter-TSS (NM_005836)	-4	NM_005836	10247		NM_005836	ENSG00000132541	RIDA	HRSP12|P14.5|PSP|UK114|hp14.5	reactive intermediate imine deaminase A homolog	protein-coding
112192	chr19	5673351	5674050	+	0	NA	Intergenic	(CATC)n|Simple_repeat|Simple_repeat	6538	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
152112	chr22	19895171	19895730	+	0	NA	exon (NM_001282512, exon 11 of 12)	exon (NM_001282512, exon 11 of 12)	37103	NM_001352301	10587		NM_006440	ENSG00000184470	TXNRD2	GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2|TXNR2	thioredoxin reductase 2	protein-coding
70358	chr14	101876151	101877200	+	0	NA	intron (NM_178587, intron 2 of 11)	intron (NM_178587, intron 2 of 11)	66812	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
131744	chr2	98452071	98452230	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	6140	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
53790	chr12	68932621	68933580	+	0	NA	promoter-TSS (NM_001005502)	promoter-TSS (NM_001005502)	71	NM_198320	1368		NM_001874	ENSG00000135678	CPM	-	carboxypeptidase M	protein-coding
208743	chr7	73517301	73517700	+	0	NA	intron (NM_001370402, intron 1 of 18)	AluJr|SINE|Alu	4793	NM_001370402	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
129815	chr2	71924071	71924230	+	0	NA	Intergenic	Intergenic	223712	NM_001277742	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
3242	chr1	13795571	13796130	+	0	NA	intron (NM_012231, intron 8 of 9)	intron (NM_012231, intron 8 of 9)	46435	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
162460	chr3	48480771	48481130	+	0	NA	intron (NM_001272065, intron 2 of 5)	AluSq2|SINE|Alu	-7792	NM_001272083	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
7221	chr1	32312451	32312550	+	0	NA	intron (NM_004964, intron 2 of 13)	AluSx1|SINE|Alu	20417	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
59470	chr13	26062901	26063100	+	0	NA	Intergenic	Intergenic	-3478	NR_146971	107984009		NR_146971		LINC00415	-	long intergenic non-protein coding RNA 415	ncRNA
217997	chr8	38390571	38390880	+	0	NA	intron (NM_144652, intron 2 of 9)	AluSc|SINE|Alu	3594	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
174430	chr4	39526771	39528700	+	0	NA	promoter-TSS (NM_001184701)	promoter-TSS (NM_001184701)	-104	NR_047679	100885776		NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	ncRNA
149453	chr21	31657851	31658250	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-1643	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
4164	chr1	19388771	19389130	+	0	NA	intron (NM_001313932, intron 2 of 4)	intron (NM_001313932, intron 2 of 4)	76624	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
112049	chr19	5139001	5140430	+	0	NA	intron (NM_015015, intron 18 of 22)	L1MB1|LINE|L1	170602	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
20050	chr1	185474501	185474730	+	0	NA	Intergenic	MIR|SINE|MIR	-139576	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
137775	chr2	199461871	199462180	+	0	NA	intron (NM_015265, intron 1 of 11)	CpG	3083	NM_001172517	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
79281	chr16	533901	534600	+	0	NA	intron (NM_005632, intron 2 of 13)	intron (NM_005632, intron 2 of 13)	-1066	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	ncRNA
162791	chr3	49099271	49099430	+	0	NA	TTS (NR_106950)	TTS (NR_106950)	564	NR_106950	102465536		NR_106950	ENSG00000284488	MIR6890	hsa-mir-6890	microRNA 6890	ncRNA
53765	chr12	68675071	68675750	+	0	NA	non-coding (NR_038930, exon 3 of 3)	non-coding (NR_038930, exon 3 of 3)	11449	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
52058	chr12	54025871	54026280	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	-2365	NM_004503	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
91077	chr17	3048651	3050030	+	0	NA	Intergenic	Intergenic	14267	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
125300	chr2	10547921	10548180	+	0	NA	Intergenic	Intergenic	98322	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
223670	chr8	144394571	144394930	+	0	NA	promoter-TSS (NR_030635)	promoter-TSS (NR_030635)	-520	NR_030635	100126351		NR_030635	ENSG00000284310	MIR939	MIRN939|hsa-mir-939|mir-939	microRNA 939	ncRNA
194975	chr6	35341751	35343850	+	0	NA	intron (NM_006238, intron 1 of 7)	CpG	242	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
54874	chr12	95651801	95652000	+	0	NA	intron (NR_077225, intron 1 of 4)	AluJo|SINE|Alu	2645	NR_077225	100132594		NR_077225	ENSG00000293270	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
123176	chr19	52271251	52271550	+	0	NA	intron (NM_001010851, intron 1 of 3)	MER21C|LTR|ERVL	1813	NM_001010851	90321		NM_001010851	ENSG00000196214	ZNF766	-	zinc finger protein 766	protein-coding
103538	chr17	78650321	78650580	+	0	NA	Intergenic	Intergenic	-18393	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
55402	chr12	104470301	104470650	+	0	NA	intron (NM_018413, intron 1 of 2)	THE1D|LTR|ERVL-MaLR	13527	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
87183	chr16	69381351	69381780	+	0	NA	intron (NM_005652, intron 3 of 9)	AluJb|SINE|Alu	4442	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
165956	chr3	107697521	107698050	+	0	NA	intron (NM_020235, intron 3 of 16)	L1PA3|LINE|L1	174823	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
221979	chr8	129991551	129991650	+	0	NA	intron (NM_001353269, intron 1 of 10)	MSTC|LTR|ERVL-MaLR	16853	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
90299	chr17	1055901	1056730	+	0	NA	intron (NM_001282149, intron 8 of 17).3	intron (NM_001282149, intron 8 of 17).3	22678	NM_001282149	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
32795	chr10	108114351	108114550	+	0	NA	Intergenic	L1PA2|LINE|L1	-45157	NR_125760	103695365		NR_125760	ENSG00000229981	LINC01435	TCONS_00018040	long intergenic non-protein coding RNA 1435	ncRNA
114523	chr19	12808101	12808330	+	0	NA	intron (NM_006397, intron 4 of 7)	AluSx1|SINE|Alu	1631	NM_006397	10535		NM_006397	ENSG00000104889	RNASEH2A	AGS4|JUNB|RNASEHI|RNHIA|RNHL	ribonuclease H2 subunit A	protein-coding
70196	chr14	100544771	100545380	+	0	NA	TTS (NR_169570)	TTS (NR_169570)	3052	NM_001385103	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
134571	chr2	144227671	144227830	+	0	NA	intron (NM_001164629, intron 2 of 11)	intron (NM_001164629, intron 2 of 11)	9589	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
6363	chr1	27845451	27845750	+	0	NA	intron (NM_138558, intron 5 of 6)	intron (NM_138558, intron 5 of 6)	11199	NR_002997	677774		NR_002997	ENSG00000252947	SCARNA1	ACA35	small Cajal body-specific RNA 1	ncRNA
160518	chr3	30643801	30644400	+	0	NA	intron (NM_001024847, intron 2 of 7)	L2a|LINE|L2	37499	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
112227	chr19	5709301	5710100	+	0	NA	intron (NR_076392, intron 5 of 18)	AluY|SINE|Alu	10446	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
110045	chr19	1470351	1472250	+	0	NA	3' UTR (NM_001351273, exon 14 of 14)	3' UTR (NM_001351273, exon 14 of 14)	7915	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
21031	chr1	203009551	203009850	+	0	NA	intron (NM_001322959, intron 2 of 6)	AluJb|SINE|Alu	2069	NM_001349859	92703		NM_138391	ENSG00000163444	TMEM183A	C1orf37	transmembrane protein 183A	protein-coding
165606	chr3	101676901	101678700	+	0	NA	promoter-TSS (NM_014415)	promoter-TSS (NM_014415)	-668	NM_014415	27107		NM_014415	ENSG00000066422	ZBTB11	MRT69|ZNF-U69274|ZNF913	zinc finger and BTB domain containing 11	protein-coding
25039	chr10	3764351	3765630	+	0	NA	Intergenic	Intergenic	20219	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
158878	chr3	9883601	9883800	+	0	NA	Intergenic	L1MB8|LINE|L1	-3446	NM_001199551	63924		NM_022094	ENSG00000187288	CIDEC	CIDE-3|CIDE3|FPLD5|FSP27	cell death inducing DFFA like effector c	protein-coding
15897	chr1	151544171	151544400	+	0	NA	intron (NM_001126337, intron 1 of 11)	intron (NM_001126337, intron 1 of 11)	-1511	NR_030280	693139		NR_030280	ENSG00000207606	MIR554	MIRN554|hsa-mir-554	microRNA 554	ncRNA
8309	chr1	40062721	40063180	+	0	NA	intron (NM_001350483, intron 4 of 12)	intron (NM_001350483, intron 4 of 12)	21924	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
32760	chr10	104326701	104327350	+	0	NA	TTS (NR_120622)	TTS (NR_120622)	1967	NM_001272012	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
75644	chr15	67253801	67255500	+	0	NA	promoter-TSS (NM_001322470)	promoter-TSS (NM_001322470)	11	NM_024666	79719		NM_024666	ENSG00000103591	AAGAB	KPPP1|PPKP1|PPKP1A|p34	alpha and gamma adaptin binding protein	protein-coding
238627	chrX	153957671	153957830	+	0	NA	intron (NM_005334, intron 12 of 25)	intron (NM_005334, intron 12 of 25)	-11015	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
108629	chr18	76406001	76406400	+	0	NA	intron (NM_014643, intron 3 of 6)	intron (NM_014643, intron 3 of 6)	-85452	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
93704	chr17	19433971	19434130	+	0	NA	Intergenic	MER21C|LTR|ERVL	22818	NM_007148	7732		NM_007148	ENSG00000128482	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
97506	chr17	43913571	43913930	+	0	NA	Intergenic	Intergenic	-3458	NR_026770	23591		NM_014318	ENSG00000267496	FAM215A	APR-2|C17orf88|LINC00530	family with sequence similarity 215 member A	ncRNA
225011	chr9	33128601	33129280	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	20248	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
186451	chr5	137660301	137660700	+	0	NA	intron (NM_017415, intron 7 of 14)	intron (NM_017415, intron 7 of 14)	-12851	NR_030588	100126343		NR_030588	ENSG00000216009	MIR874	MIRN874|hsa-mir-874|mir-874	microRNA 874	ncRNA
112343	chr19	5929521	5929780	+	0	NA	intron (NM_003624, intron 8 of 16)	intron (NM_003624, intron 8 of 16)	15396	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
57249	chr12	121569801	121570000	+	0	NA	intron (NM_001005366, intron 4 of 22)	AluJr|SINE|Alu	10346	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
212024	chr7	114926671	114927350	+	0	NA	intron (NM_199072, intron 2 of 4)	MER20|DNA|hAT-Charlie	4856	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
64850	chr14	35215101	35215480	+	0	NA	intron (NM_001256678, intron 4 of 6)	intron (NM_001256678, intron 4 of 6)	-63268	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
96920	chr17	42150971	42151780	+	0	NA	intron (NM_201434, intron 1 of 6)	AluY|SINE|Alu	3614	NM_201434	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
6894	chr1	31535771	31536280	+	0	NA	Intergenic	AluY|SINE|Alu	17590	NR_027085	284551		NR_027085		LINC01226	-	long intergenic non-protein coding RNA 1226	ncRNA
166005	chr3	108135271	108135430	+	0	NA	non-coding (NR_110028, exon 2 of 3)	non-coding (NR_110028, exon 2 of 3)	9529	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
121072	chr19	45878801	45879200	+	0	NA	Intergenic	Intergenic	7141	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
69232	chr14	92783771	92784280	+	0	NA	Intergenic	Intergenic	-10280	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
101727	chr17	68774501	68774700	+	0	NA	Intergenic	LTR13|LTR|ERVK	146446	NR_110825	101928104		NR_110825	ENSG00000267659	LINC01482	-	long intergenic non-protein coding RNA 1482	ncRNA
231729	chr9	131832901	131833300	+	0	NA	Intergenic	MER34|LTR|ERV1	-93024	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
139351	chr2	219638371	219638530	+	0	NA	intron (NR_048551, intron 18 of 22)	intron (NR_048551, intron 18 of 22)	10820	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
87728	chr16	75109921	75110200	+	0	NA	3' UTR (NM_032268, exon 5 of 5)	3' UTR (NM_032268, exon 5 of 5)	6712	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
69454	chr14	94635321	94635400	+	0	NA	Intergenic	Intergenic	-5365	NR_015340	388007		NR_015340	ENSG00000290676	SERPINA13P	SERPINA13|UNQ6121	serpin family A member 13, pseudogene	pseudo
222295	chr8	133471571	133471930	+	0	NA	intron (NM_173344, intron 5 of 9)	intron (NM_173344, intron 5 of 9)	100137	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
27502	chr10	32281271	32281700	+	0	NA	intron (NR_168510, intron 10 of 14)	MamRep137|DNA|TcMar-Tigger	65673	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
82519	chr16	17590951	17591530	+	0	NA	Intergenic	MER41B|LTR|ERV1	-120280	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
22365	chr1	217620951	217621050	+	0	NA	intron (NM_001297754, intron 1 of 5)	intron (NM_001297754, intron 1 of 5)	10090	NM_001297754	55105		NM_018040	ENSG00000092978	GPATCH2	CT110|GPATC2|PPP1R30|Pfa1	G-patch domain containing 2	protein-coding
105006	chr17	82028001	82028600	+	0	NA	exon (NM_144999, exon 10 of 17)	exon (NM_144999, exon 10 of 17)	-3378	NM_005052	5881		NM_005052	ENSG00000169750	RAC3	-	Rac family small GTPase 3	protein-coding
72098	chr15	28923501	28923700	+	0	NA	intron (NM_001353790, intron 2 of 14)	intron (NM_001353790, intron 2 of 14)	1963	NM_001130414	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
141637	chr2	241720201	241720400	+	0	NA	3' UTR (NM_001330161, exon 8 of 8)	3' UTR (NM_001330161, exon 8 of 8)	-14330	NM_001287249	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
120074	chr19	42081051	42081150	+	0	NA	exon (NM_001330519, exon 2 of 2)	exon (NM_001330519, exon 2 of 2)	4934	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
168029	chr3	136898551	136899250	+	0	NA	intron (NM_001291999, intron 1 of 3)	intron (NM_001291999, intron 1 of 3)	-31602	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
217979	chr8	38368201	38369000	+	0	NA	intron (NM_017778, intron 1 of 9)	intron (NM_017778, intron 1 of 9)	13671	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
98813	chr17	48333801	48334000	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	39553	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
228123	chr9	96652351	96652450	+	0	NA	intron (NM_153698, intron 2 of 5)	AluSx|SINE|Alu	2917	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
106861	chr18	24075771	24076510	+	0	NA	intron (NM_001135993, intron 4 of 13)	AluSx1|SINE|Alu	-37187	NM_001292030	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
4706	chr1	23148951	23149450	+	0	NA	intron (NM_033631, intron 1 of 4)	intron (NM_033631, intron 1 of 4)	19656	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
31195	chr10	91220021	91221900	+	0	NA	intron (NM_032373, intron 1 of 9)	CpG	297	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
22390	chr1	218473471	218474080	+	0	NA	intron (NR_031644, intron 2 of 6)	intron (NR_031644, intron 2 of 6)	31149	NR_125715	103611157		NR_125715	ENSG00000281453	TGFB2-OT1	-	TGFB2 overlapping transcript 1	ncRNA
223808	chr8	144797401	144797600	+	0	NA	Intergenic	Intergenic	-1413	NM_001317936	340385		NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
4534	chr1	21935921	21936330	+	0	NA	intron (NM_001291860, intron 1 of 96)	intron (NM_001291860, intron 1 of 96)	1185	NM_005529	3339		NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
88976	chr16	87869001	87870000	+	0	NA	promoter-TSS (NM_003486)	promoter-TSS (NM_003486)	7	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
219335	chr8	70220371	70220600	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	-149233	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
97702	chr17	44323121	44323430	+	0	NA	intron (NM_001321241, intron 3 of 11)	intron (NM_001321241, intron 3 of 11)	1548	NR_159404	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
207795	chr7	50264571	50265200	+	0	NA	Intergenic	Intergenic	-39179	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
182116	chr5	56091401	56091600	+	0	NA	Intergenic	Intergenic	96333	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
31408	chr10	95558701	95558900	+	0	NA	intron (NM_001384456, intron 1 of 27)	intron (NM_001384456, intron 1 of 27)	2571	NM_001384465	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
229055	chr9	114342171	114342330	+	0	NA	intron (NM_001317952, intron 18 of 20)	intron (NM_001317952, intron 18 of 20)	12381	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
50398	chr12	47307651	47308040	+	0	NA	promoter-TSS (NR_135024)	promoter-TSS (NR_135024)	-446	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
172371	chr4	1751721	1752050	+	0	NA	Intergenic	Intergenic	30364	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
73750	chr15	45399471	45400030	+	0	NA	intron (NM_001321015, intron 1 of 11)	intron (NM_001321015, intron 1 of 11)	2477	NM_001321015	2628		NM_001482	ENSG00000171766	GATM	AGAT|AT|CCDS3|FRTS|FRTS1|RFS	glycine amidinotransferase	protein-coding
31160	chr10	90880101	90880530	+	0	NA	intron (NM_006413, intron 5 of 10)	intron (NM_006413, intron 5 of 10)	8341	NM_006413	10556		NM_006413	ENSG00000148688	RPP30	TSG15	ribonuclease P/MRP subunit p30	protein-coding
209698	chr7	83936201	83936430	+	0	NA	Intergenic	Intergenic	258474	NM_006080	10371		NM_006080	ENSG00000075213	SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	semaphorin 3A	protein-coding
117072	chr19	19062351	19062650	+	0	NA	Intergenic	Intergenic	-1494	NM_001321544	284439		NM_178526	ENSG00000181035	SLC25A42	MECREN	solute carrier family 25 member 42	protein-coding
95068	chr17	32828451	32828750	+	0	NA	intron (NM_015194, intron 1 of 21)	intron (NM_015194, intron 1 of 21)	48524	NM_015194	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
51203	chr12	50518801	50519000	+	0	NA	intron (NM_173602, intron 1 of 37)	AluJo|SINE|Alu	13915	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
1200	chr1	2250171	2250330	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	21931	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
152533	chr22	20980971	20981130	+	0	NA	non-coding (NR_027464, exon 19 of 19)	non-coding (NR_027464, exon 19 of 19)	-1247	NM_006767	8216		NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|NS2|SWNTS2	leucine zipper like post translational regulator 1	protein-coding
106955	chr18	31497801	31498350	+	0	NA	promoter-TSS (NM_001943)	promoter-TSS (NM_001943)	-102	NM_001943	1829		NM_001943	ENSG00000046604	DSG2	CDHF5|HDGC	desmoglein 2	protein-coding
52235	chr12	54398171	54398330	+	0	NA	intron (NM_002205, intron 28 of 29)	L2b|LINE|L2	-6952	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
148739	chr21	7478521	7479470	+	0	NA	Intergenic	Intergenic	32791	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
139800	chr2	230320951	230321050	+	0	NA	Intergenic	Intergenic	-6171	NM_001308163	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
23504	chr1	228765321	228766000	+	0	NA	Intergenic	Intergenic	30181	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
37617	chr11	20163021	20163880	+	0	NA	Intergenic	CpG	-2975	NM_001029865	120237		NM_001029865	ENSG00000109851	DBX1	HLX1	developing brain homeobox 1	protein-coding
47689	chr12	6370451	6370750	+	0	NA	intron (NM_001159575, intron 2 of 12)	intron (NM_001159575, intron 2 of 12)	-4560	NM_001270987	4055		NM_002342	ENSG00000111321	LTBR	D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	lymphotoxin beta receptor	protein-coding
27706	chr10	33193251	33193600	+	0	NA	intron (NM_001244973, intron 12 of 16)	intron (NM_001244973, intron 12 of 16)	-76618	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
154237	chr22	31591641	31592050	+	0	NA	intron (NM_001007467, intron 15 of 32)	SVA_F|Retroposon|SVA	29686	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
191573	chr6	12007351	12007700	+	0	NA	Intergenic	AluY|SINE|Alu	-4787	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
135315	chr2	160332371	160333050	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	-60815	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
184067	chr5	93569321	93569580	+	0	NA	intron (NR_021490, intron 1 of 5)	intron (NR_021490, intron 1 of 5)	1893	NR_109825	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
106605	chr18	22280171	22280530	+	0	NA	Intergenic	Intergenic	110761	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
220277	chr8	97783471	97783630	+	0	NA	intron (NM_018407, intron 1 of 6)	LTR49|LTR|ERV1	7762	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
199548	chr6	118843921	118844250	+	0	NA	intron (NR_165493, intron 7 of 11)	intron (NR_165493, intron 7 of 11)	-50067	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
153757	chr22	29411951	29412050	+	0	NA	Intergenic	Intergenic	-23417	NM_145730	162		NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2|KIDAR	adaptor related protein complex 1 subunit beta 1	protein-coding
137498	chr2	197152171	197153630	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-45091	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
2469	chr1	9657551	9657900	+	0	NA	intron (NM_005026, intron 1 of 23)	intron (NM_005026, intron 1 of 23)	-3139	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
97348	chr17	43288321	43288850	+	0	NA	Intergenic	AluJb|SINE|Alu	-4256	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
190676	chr5	181283351	181283650	+	0	NA	Intergenic	REP522|Satellite|telo	22288	NR_102760	100507602		NR_102759	ENSG00000248275	TRIM52-AS1	-	TRIM52 antisense RNA 1 (head to head)	ncRNA
109160	chr19	245371	246360	+	0	NA	Intergenic	(TAACCC)n|Simple_repeat|Simple_repeat	-43656	NR_028324	399844		NM_001004321		LINC01002	-	long intergenic non-protein coding RNA 1002	ncRNA
130742	chr2	86792801	86793150	+	0	NA	intron (NR_168478, intron 2 of 7)	intron (NR_168478, intron 2 of 7)	-1261	NR_027353	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
171623	chr3	197459581	197460550	+	0	NA	Intergenic	Intergenic	49596	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
48535	chr12	10211051	10211550	+	0	NA	Intergenic	AluJb|SINE|Alu	-1577	NM_001363598	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
209666	chr7	79451901	79452700	+	0	NA	promoter-TSS (NR_038345)	promoter-TSS (NR_038345)	-657	NR_038346	100505881		NR_038343	ENSG00000234456	MAGI2-AS3	-	MAGI2 antisense RNA 3	ncRNA
143382	chr20	28556501	28556700	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	46065	NR_132315	100289097		NR_132315	ENSG00000282826	FRG1CP	-	FSHD region gene 1 family member C, pseudogene	pseudo
180863	chr5	32607751	32608050	+	0	NA	Intergenic	MER21C|LTR|ERVL	22343	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
63467	chr13	114140801	114141580	+	0	NA	Intergenic	L1MD1|LINE|L1	-8567	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
111925	chr19	4727201	4727400	+	0	NA	Intergenic	AluJr|SINE|Alu	-3458	NR_169285	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
183557	chr5	80134601	80135250	+	0	NA	intron (NR_126061, intron 11 of 13)	MLT1G3-int|LTR|ERVL-MaLR	-51260	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
45122	chr11	117178321	117179980	+	0	NA	TTS (NR_110268)	TTS (NR_110268)	407	NM_001040455	51092		NM_015996	ENSG00000149577	SIDT2	CGI-40	SID1 transmembrane family member 2	protein-coding
125965	chr2	25231871	25232230	+	0	NA	TTS (NM_001375819)	TTS (NM_001375819)	20081	NM_001320893	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
170526	chr3	186584951	186585050	+	0	NA	intron (NR_165643, intron 9 of 9)	intron (NR_165643, intron 9 of 9)	14280	NR_165640	51726		NM_016306	ENSG00000090520	DNAJB11	ABBP-2|ABBP2|DJ9|Dj-9|EDJ|ERdj3|ERj3|ERj3p|PKD6|PRO1080|UNQ537	DnaJ heat shock protein family (Hsp40) member B11	protein-coding
33230	chr10	114102371	114102680	+	0	NA	Intergenic	Intergenic	58659	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
196964	chr6	52994851	52996200	+	0	NA	promoter-TSS (NM_001512)	promoter-TSS (NM_001512)	-95	NR_001445	125050		NR_001445	ENSG00000202198	RN7SK	7SK	RNA component of 7SK nuclear ribonucleoprotein	snRNA
182733	chr5	68265351	68265800	+	0	NA	intron (NM_181523, intron 2 of 15)	MLT1A|LTR|ERVL-MaLR	-22944	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
10522	chr1	66937801	66938000	+	0	NA	intron (NM_001077704, intron 1 of 13)	intron (NM_001077704, intron 1 of 13)	7644	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
57587	chr12	122399421	122400330	+	0	NA	TTS (NR_045382)	TTS (NR_045382)	4333	NR_045382	100507066		NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
148865	chr21	8430901	8431500	+	0	NA	Intergenic	AluSp|SINE|Alu	-1330	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
137466	chr2	197054451	197054950	+	0	NA	intron (NM_001195144, intron 16 of 27)	intron (NM_001195144, intron 16 of 27)	-127993	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
175446	chr4	71198701	71199500	+	0	NA	intron (NM_001134742, intron 1 of 24)	intron (NM_001134742, intron 1 of 24)	11841	NM_001098484	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
179632	chr4	186160571	186160830	+	0	NA	intron (NM_001350178, intron 8 of 13)	(CA)n|Simple_repeat|Simple_repeat	15813	NM_015398	25854		NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
191240	chr6	5850751	5851780	+	0	NA	Intergenic	Intergenic	152779	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
204417	chr7	3105451	3105780	+	0	NA	Intergenic	AluSz6|SINE|Alu	52958	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
134419	chr2	143084921	143085530	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-44194	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
121147	chr19	46280721	46281230	+	0	NA	Intergenic	Intergenic	-16067	NM_152795	64344		NM_022462	ENSG00000124440	HIF3A	HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3 subunit alpha	protein-coding
26648	chr10	22572601	22573000	+	0	NA	intron (NM_001330062, intron 5 of 9)	L2a|LINE|L2	-134871	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
5128	chr1	24888101	24888630	+	0	NA	Intergenic	Intergenic	31051	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
12083	chr1	99758171	99758330	+	0	NA	intron (NM_001361041, intron 1 of 16)	MER4C|LTR|ERV1	7543	NM_001013660	391059		NM_001013660	ENSG00000156869	FRRS1	SDFR2|SDR2	ferric chelate reductase 1	protein-coding
30692	chr10	80525701	80526130	+	0	NA	Intergenic	Intergenic	10027	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
140160	chr2	231613401	231615700	+	0	NA	Intergenic	CpG	21686	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
148601	chr21	5120501	5120750	+	0	NA	TTS (NM_001320384)	TTS (NM_001320384)	7744	NM_001363761	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
120938	chr19	45674101	45674980	+	0	NA	promoter-TSS (NR_030372)	promoter-TSS (NR_030372)	-388	NR_030372	693227		NR_030372	ENSG00000207773	MIR642A	MIR642|MIRN642|hsa-mir-642|hsa-mir-642a|mir-642a	microRNA 642a	ncRNA
136101	chr2	173919471	173919830	+	0	NA	intron (NM_001172712, intron 4 of 6)	L1ME3A|LINE|L1	44230	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
221997	chr8	130010451	130010550	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	-2047	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
85956	chr16	57266421	57267380	+	0	NA	intron (NM_015993, intron 1 of 3)	intron (NM_015993, intron 1 of 3)	17772	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
115804	chr19	16417451	16418350	+	0	NA	intron (NM_021235, intron 11 of 22)	intron (NM_021235, intron 11 of 22)	54070	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
168323	chr3	141729271	141729430	+	0	NA	Intergenic	Intergenic	-8859	NM_183237	9616		NM_014245	ENSG00000114125	RNF7	CKBBP1|ROC2|SAG|rbx2	ring finger protein 7	protein-coding
125851	chr2	24471671	24471830	+	0	NA	Intergenic	L2a|LINE|L2	-19504	NM_147223	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
172658	chr4	2646671	2646830	+	0	NA	exon (NM_001256666, exon 5 of 20)	exon (NM_001256666, exon 5 of 20)	21318	NM_001256668	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
168247	chr3	141399251	141399880	+	0	NA	intron (NM_001376171, intron 2 of 4)	intron (NM_001376171, intron 2 of 4)	-2197	NM_001376180	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
89865	chr16	89635521	89636050	+	0	NA	intron (NM_004413, intron 2 of 10)	intron (NM_004413, intron 2 of 10)	15188	NM_004413	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
25487	chr10	7000201	7000400	+	0	NA	Intergenic	Intergenic	186484	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
38384	chr11	44727651	44728350	+	0	NA	intron (NM_130783, intron 1 of 9)	CpG	1038	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
84494	chr16	30493471	30493830	+	0	NA	intron (NM_002209, intron 11 of 30)	AluSx1|SINE|Alu	-10269	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
204591	chr7	5299851	5299950	+	0	NA	intron (NM_153247, intron 9 of 10)	AluSz|SINE|Alu	16957	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
158950	chr3	10189301	10190000	+	0	NA	intron (NM_001570, intron 2 of 12)	intron (NM_001570, intron 2 of 12)	24731	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
154010	chr22	30428221	30430300	+	0	NA	TTS (NM_016498)	TTS (NM_016498)	-3426	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
114090	chr19	11111171	11113400	+	0	NA	intron (NM_001195800, intron 6 of 15)	AluY|SINE|Alu	-1189	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
171724	chr3	197947601	197948180	+	0	NA	intron (NM_032263, intron 2 of 11)	intron (NM_032263, intron 2 of 11)	2035	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
50156	chr12	45880501	45881100	+	0	NA	intron (NM_152641, intron 16 of 20)	intron (NM_152641, intron 16 of 20)	109774	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
144011	chr20	33369001	33369850	+	0	NA	intron (NM_001278169, intron 11 of 13)	AluY|SINE|Alu	32094	NM_016408	51654		NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
148951	chr21	10426581	10427150	+	0	NA	intron (NM_001187, intron 3 of 4)	(GTGGTG)n|Simple_repeat|Simple_repeat	13333	NM_182481	85318		NM_182481		BAGE3	CT2.3	BAGE family member 3	protein-coding
199989	chr6	128000171	128000730	+	0	NA	intron (NM_001291982, intron 18 of 18)	intron (NM_001291982, intron 18 of 18)	-27415	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
194641	chr6	33588121	33588380	+	0	NA	intron (NR_027908, intron 1 of 1)	intron (NR_027908, intron 1 of 1)	4551	NR_028361	449520		NM_001005478	ENSG00000293518	GGNBP1	-	gametogenetin binding protein 1 (pseudogene)	pseudo
8083	chr1	39031921	39032200	+	0	NA	intron (NM_004552, intron 2 of 2)	AluSq|SINE|Alu	5710	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
238452	chrX	152911271	152912030	+	0	NA	Intergenic	(CCCAT)n|Simple_repeat|Simple_repeat	-2792	NM_001178108	7739		NM_007150	ENSG00000147394	ZNF185	SCELL	zinc finger protein 185 with LIM domain	protein-coding
12276	chr1	100529401	100529800	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-8539	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
172908	chr4	3491601	3493400	+	0	NA	intron (NM_001256896, intron 3 of 3)	intron (NM_001256896, intron 3 of 3)	7956	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
17280	chr1	156426571	156426900	+	0	NA	intron (NR_168071, intron 2 of 4)	intron (NR_168071, intron 2 of 4)	2691	NR_168071	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
71344	chr14	105447551	105447850	+	0	NA	intron (NM_001203258, intron 3 of 20)	intron (NM_001203258, intron 3 of 20)	-25245	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
89890	chr16	89669651	89669950	+	0	NA	non-coding (NR_073515, exon 2 of 2)	non-coding (NR_073515, exon 2 of 2)	11732	NR_073515	124045		NM_153025	ENSG00000167523	SPATA33	C16orf55	spermatogenesis associated 33	protein-coding
44462	chr11	104965421	104965680	+	0	NA	intron (NM_033306, intron 1 of 9)	LTR8|LTR|ERV1	3024	NM_001225	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
182634	chr5	67003151	67003250	+	0	NA	intron (NR_111908, intron 1 of 1)	intron (NR_111908, intron 1 of 1)	954	NR_111908	101928794		NR_111908		MAST4-AS1	-	MAST4 antisense RNA 1	ncRNA
235285	chrX	41922901	41925380	+	0	NA	promoter-TSS (NM_001367721)	promoter-TSS (NM_001367721)	-586	NM_001367721	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
158600	chr3	4827801	4828200	+	0	NA	intron (NM_002222, intron 56 of 57)	intron (NM_002222, intron 56 of 57)	-76410	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
150161	chr21	38913171	38913530	+	0	NA	intron (NR_120405, intron 2 of 3)	intron (NR_120405, intron 2 of 3)	25079	NR_120405	400867		NR_120405		ETS2-AS1	-	ETS2 antisense RNA 1	ncRNA
83218	chr16	23754551	23755400	+	0	NA	promoter-TSS (NM_022097)	promoter-TSS (NM_022097)	-51	NM_022097	63928		NM_022097	ENSG00000166869	CHP2	-	calcineurin like EF-hand protein 2	protein-coding
115037	chr19	14113801	14114280	+	0	NA	intron (NM_002730, intron 1 of 9)	intron (NM_002730, intron 1 of 9)	151	NM_207518	5566		NM_002730	ENSG00000072062	PRKACA	CAFD1|PKACA|PPNAD4	protein kinase cAMP-activated catalytic subunit alpha	protein-coding
190649	chr5	181235021	181235630	+	0	NA	3' UTR (NM_033549, exon 6 of 6)	3' UTR (NM_033549, exon 6 of 6)	6564	NR_002592	619571		NR_002592	ENSG00000272296	SNORD96A	U96A	small nucleolar RNA, C/D box 96A	snoRNA
68904	chr14	91352851	91353400	+	0	NA	intron (NM_001080414, intron 4 of 29)	intron (NM_001080414, intron 4 of 29)	64695	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
140019	chr2	231036201	231036600	+	0	NA	Intergenic	Intergenic	-1123	NM_001144994	257407		NM_001144994	ENSG00000204128	C2orf72	-	chromosome 2 open reading frame 72	protein-coding
39967	chr11	62580701	62581100	+	0	NA	intron (NM_022830, intron 4 of 8)	AluSx|SINE|Alu	-7009	NM_001404	1937		NM_001404	ENSG00000254772	EEF1G	EF1G|GIG35	eukaryotic translation elongation factor 1 gamma	protein-coding
43835	chr11	86978821	86979130	+	0	NA	intron (NR_038905, intron 2 of 2)	intron (NR_038905, intron 2 of 2)	23354	NR_038905	100506368		NR_038905	ENSG00000246523	FZD4-DT	-	FZD4 divergent transcript	ncRNA
42355	chr11	68546571	68546730	+	0	NA	intron (NR_147970, intron 3 of 23)	MLT1L|LTR|ERVL-MaLR	85898	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
209283	chr7	75928351	75929300	+	0	NA	intron (NM_001382657, intron 2 of 16)	intron (NM_001382657, intron 2 of 16)	13628	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
76311	chr15	74377221	74377480	+	0	NA	Intergenic	Intergenic	-1732	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
60217	chr13	40492071	40492630	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-11344	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
2705	chr1	10646271	10646800	+	0	NA	TTS (NM_017766)	TTS (NM_017766)	150111	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
217690	chr8	30119871	30120030	+	0	NA	intron (NM_001128208, intron 3 of 3)	AluSz|SINE|Alu	24542	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
21945	chr1	207882671	207884050	+	0	NA	3' UTR (NM_001025109, exon 8 of 8)	3' UTR (NM_001025109, exon 8 of 8)	27765	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
174375	chr4	38949121	38950030	+	0	NA	Intergenic	Intergenic	81543	NR_030300	693159		NR_030300	ENSG00000207944	MIR574	MIR574-3p|MIRN574|hsa-mir-574|mir-574	microRNA 574	ncRNA
70013	chr14	100080501	100080730	+	0	NA	intron (NM_016337, intron 1 of 13)	intron (NM_016337, intron 1 of 13)	15193	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
154169	chr22	31297371	31297730	+	0	NA	Intergenic	AluSg|SINE|Alu	-5016	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
236063	chrX	56397701	56397980	+	0	NA	Intergenic	MER52-int|LTR|ERV1	164682	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
157116	chr22	42643851	42644180	+	0	NA	intron (NM_000398, intron 1 of 8)	MIR|SINE|MIR	619	NM_001171660	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
174840	chr4	48445551	48445930	+	0	NA	Intergenic	Intergenic	-37603	NM_152679	201780		NM_152679	ENSG00000145248	SLC10A4	P4	solute carrier family 10 member 4	protein-coding
117196	chr19	19372271	19372430	+	0	NA	Intergenic	AluJr|SINE|Alu	-13493	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
96422	chr17	40175451	40175750	+	0	NA	Intergenic	AluSz|SINE|Alu	-1410	NM_001303534	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
209912	chr7	92245181	92246880	+	0	NA	promoter-TSS (NM_001350693)	promoter-TSS (NM_001350693)	56	NM_019004	54467		NM_019004	ENSG00000001629	ANKIB1	-	ankyrin repeat and IBR domain containing 1	protein-coding
125357	chr2	11090101	11090430	+	0	NA	Intergenic	L1MB7|LINE|L1	41911	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
48114	chr12	7859871	7860630	+	0	NA	intron (NM_001286237, intron 1 of 9)	intron (NM_001286237, intron 1 of 9)	12665	NM_001286236	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
215380	chr7	157429551	157429650	+	0	NA	Intergenic	Intergenic	-36631	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
52313	chr12	54933371	54933880	+	0	NA	Intergenic	MER41B|LTR|ERV1	40107	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
139214	chr2	219284621	219285530	+	0	NA	3' UTR (NM_006736, exon 9 of 9)	3' UTR (NM_006736, exon 9 of 9)	5709	NM_006736	3300		NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HMNR5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
15698	chr1	150995651	150996680	+	0	NA	TTS (NM_001376664)	TTS (NM_001376664)	10737	NM_001040217	55793		NM_018379	ENSG00000143409	MINDY1	FAM63A|MINDY-1	MINDY lysine 48 deubiquitinase 1	protein-coding
34500	chr10	132552701	132553350	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	15238	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
156888	chr22	42151451	42151750	+	0	NA	Intergenic	Intergenic	-7046	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
200599	chr6	136700971	136701130	+	0	NA	intron (NM_005923, intron 3 of 29)	MIR|SINE|MIR	71936	NR_125858	101928461		NR_125858	ENSG00000234263	MAP3K5-AS1	-	MAP3K5 antisense RNA 1	ncRNA
226919	chr9	79579221	79579630	+	0	NA	intron (NM_001351556, intron 4 of 18)	intron (NM_001351556, intron 4 of 18)	6248	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
130597	chr2	85879521	85879780	+	0	NA	intron (NM_001354229, intron 1 of 7)	intron (NM_001354229, intron 1 of 7)	7899	NM_001354238	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
12756	chr1	109626501	109626700	+	0	NA	intron (NM_139156, intron 5 of 17)	intron (NM_139156, intron 5 of 17)	2612	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
160740	chr3	32469751	32470530	+	0	NA	Intergenic	Intergenic	32712	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
231538	chr9	131455301	131455500	+	0	NA	intron (NM_013318, intron 10 of 31)	MER103C|DNA|hAT-Charlie	-30265	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
54928	chr12	96197851	96198350	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	3725	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
223977	chr9	2024701	2025530	+	0	NA	intron (NM_001289396, intron 1 of 33)	intron (NM_001289396, intron 1 of 33)	3170	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
3045	chr1	12153101	12154130	+	0	NA	Intergenic	Intergenic	-13328	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
72328	chr15	31265951	31267830	+	0	NA	Intergenic	Intergenic	-36028	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
94305	chr17	28743221	28744800	+	0	NA	promoter-TSS (NM_004295)	promoter-TSS (NM_004295)	-1	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
109019	chr18	79719771	79719930	+	0	NA	intron (NM_048368, intron 10 of 11)	intron (NM_048368, intron 10 of 11)	38420	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
239017	chrY	2937001	2937200	+	0	NA	intron (NM_001369710, intron 1 of 4)	intron (NM_001369710, intron 1 of 4)	1719	NM_001369702	7544		NM_003411	ENSG00000067646	ZFY	ZNF911	zinc finger protein Y-linked	protein-coding
74913	chr15	63630871	63631230	+	0	NA	intron (NM_003922, intron 68 of 77)	AluJb|SINE|Alu	-30223	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
119503	chr19	40486651	40486950	+	0	NA	intron (NM_020971, intron 2 of 35)	L2a|LINE|L2	19799	NM_020971	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
207822	chr7	50319751	50320150	+	0	NA	intron (NM_006060, intron 2 of 7)	intron (NM_006060, intron 2 of 7)	902	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
130411	chr2	85340001	85340200	+	0	NA	Intergenic	AluJb|SINE|Alu	-12111	NM_001368095	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
116700	chr19	18434601	18434800	+	0	NA	TTS (NM_001009998)	TTS (NM_001009998)	2609	NM_001253389	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
35528	chr11	1566601	1566880	+	0	NA	intron (NM_004420, intron 1 of 6)	intron (NM_004420, intron 1 of 6)	5531	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
26426	chr10	17232251	17232800	+	0	NA	intron (NM_003380, intron 3 of 9)	intron (NM_003380, intron 3 of 9)	-2540	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
103729	chr17	78845371	78845800	+	0	NA	Intergenic	AluSz|SINE|Alu	-4146	NM_001385176	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
27223	chr10	28888051	28888350	+	0	NA	Intergenic	Tigger12|DNA|TcMar-Tigger	41792	NR_164114	283080		NM_173577	ENSG00000232624	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	ncRNA
233727	chrX	1358071	1358600	+	0	NA	intron (NM_001267713, intron 5 of 9).2	intron (NM_001267713, intron 5 of 9).2	21550	NM_002183	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
164478	chr3	59987471	59988030	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	93159	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
98449	chr17	46962351	46962750	+	0	NA	intron (NM_001321133, intron 6 of 6)	MLT1H2|LTR|ERVL-MaLR	-10467	NR_049812	100847067		NR_049812	ENSG00000264999	MIR5089	-	microRNA 5089	ncRNA
55900	chr12	109726551	109727430	+	0	NA	intron (NM_032829, intron 1 of 2)	MIRc|SINE|MIR	13165	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
215234	chr7	156888971	156889130	+	0	NA	intron (NR_146958, intron 1 of 14)	AluSx|SINE|Alu	4133	NM_001363412	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
179555	chr4	185145551	185145650	+	0	NA	intron (NM_001151, intron 2 of 3)	intron (NM_001151, intron 2 of 3)	2334	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
126012	chr2	25324751	25325400	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	3646	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
217946	chr8	38166501	38166700	+	0	NA	intron (NR_045492, intron 2 of 2)	intron (NR_045492, intron 2 of 2)	9893	NM_014462	27257		NM_014462	ENSG00000175324	LSM1	CASM|YJL124C	LSM1 homolog, mRNA degradation associated	protein-coding
22020	chr1	210234371	210234530	+	0	NA	promoter-TSS (NR_024337).2	promoter-TSS (NR_024337).2	-565	NR_024337	574036		NR_024337		SERTAD4-AS1	C1orf133	SERTAD4 antisense RNA 1	ncRNA
7560	chr1	35120671	35121280	+	0	NA	Intergenic	CpG	41590	NM_024772	79830		NM_024772	ENSG00000197056	ZMYM1	MYM	zinc finger MYM-type containing 1	protein-coding
9374	chr1	47235601	47235800	+	0	NA	Intergenic	Intergenic	-3365	NM_001290403	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
80100	chr16	2013101	2013300	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-3379	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
50028	chr12	43758401	43760350	+	0	NA	promoter-TSS (NM_001098614)	promoter-TSS (NM_001098614)	424	NM_016123	51135		NM_016123	ENSG00000198001	IRAK4	IMD67|IPD1|IRAK-4|NY-REN-64|REN64	interleukin 1 receptor associated kinase 4	protein-coding
187533	chr5	142698951	142699330	+	0	NA	Intergenic	Intergenic	-1070	NM_001257205	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
80468	chr16	2695601	2695830	+	0	NA	intron (NM_018992, intron 1 of 5)	intron (NM_018992, intron 1 of 5)	13192	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
51726	chr12	53216501	53216700	+	0	NA	intron (NM_001243730, intron 2 of 8)	intron (NM_001243730, intron 2 of 8)	3762	NM_001042728	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
145291	chr20	41035771	41036300	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	7213	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
66538	chr14	61774271	61774630	+	0	NA	intron (NM_003082, intron 4 of 9)	MIRc|SINE|MIR	12030	NM_003082	6617		NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
59972	chr13	32042601	32042800	+	0	NA	intron (NM_023037, intron 1 of 60)	intron (NM_023037, intron 1 of 60)	10926	NM_023037	10129		NM_023037	ENSG00000073910	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	FRY microtubule binding protein	protein-coding
123238	chr19	52991851	52991950	+	0	NA	intron (NR_003578, intron 1 of 3)	intron (NR_003578, intron 1 of 3)	1631	NR_003578	79986		NM_024924	ENSG00000293317	ZNF702P	ZNF702	zinc finger protein 702, pseudogene	pseudo
214672	chr7	150955401	150955600	+	0	NA	exon (NM_001204798, exon 1 of 5)	exon (NM_001204798, exon 1 of 5)	304	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
109313	chr19	579171	579480	+	0	NA	intron (NM_001728, intron 2 of 8)	CpG	6729	NM_198589	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
54364	chr12	89711671	89712050	+	0	NA	TTS (NR_028138)	TTS (NR_028138)	-2494	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
193593	chr6	30711821	30712500	+	0	NA	exon (NM_014641, exon 5 of 15).3	exon (NM_014641, exon 5 of 15).3	5121	NM_014641	9656		NM_014641	ENSG00000137337	MDC1	NFBD1	mediator of DNA damage checkpoint 1	protein-coding
157733	chr22	46589121	46589530	+	0	NA	intron (NM_001366660, intron 1 of 17)	intron (NM_001366660, intron 1 of 17)	12237	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
149188	chr21	23067921	23068000	+	0	NA	Intergenic	AluJb|SINE|Alu	-11324	NR_106746	102466967		NR_106746	ENSG00000275469	MIR6130	hsa-mir-6130	microRNA 6130	ncRNA
124758	chr2	6929221	6929530	+	0	NA	intron (NM_001349184, intron 1 of 8)	intron (NM_001349184, intron 1 of 8)	-3709	NM_001349182	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
232894	chr9	136848501	136850380	+	0	NA	promoter-TSS (NM_014172)	promoter-TSS (NM_014172)	31	NM_001287343	29085		NM_014172	ENSG00000054148	PHPT1	CGI-202|HEL-S-132P|HSPC141|PHP|PHP14	phosphohistidine phosphatase 1	protein-coding
59301	chr13	24269271	24270050	+	0	NA	intron (NM_153023, intron 3 of 11)	AluJr|SINE|Alu	-1027	NM_001286794	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
228770	chr9	110255121	110255380	+	0	NA	intron (NM_003329, intron 1 of 4)	intron (NM_003329, intron 1 of 4)	1257	NM_003329	7295		NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1|TXN1|Trx80	thioredoxin	protein-coding
93513	chr17	19011571	19012130	+	0	NA	intron (NM_001270649, intron 9 of 13)	intron (NM_001270649, intron 9 of 13)	-7086	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
203643	chr7	977101	978400	+	0	NA	TTS (NR_156697)	TTS (NR_156697)	-2201	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
41604	chr11	66386051	66386930	+	0	NA	Intergenic	L1MEd|LINE|L1	-14014	NM_001300868	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
95994	chr17	39198971	39199130	+	0	NA	Intergenic	MIRb|SINE|MIR	-1233	NM_000981	6143		NM_000981	ENSG00000108298	RPL19	L19|eL19	ribosomal protein L19	protein-coding
16263	chr1	153986471	153987480	+	0	NA	promoter-TSS (NM_002870)	promoter-TSS (NM_002870)	-636	NR_073553	5872		NM_002870	ENSG00000143545	RAB13	GIG4	RAB13, member RAS oncogene family	protein-coding
17466	chr1	156709851	156709950	+	0	NA	Intergenic	Intergenic	-4084	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
239384	chrY	21138251	21138550	+	0	NA	Intergenic	MER61F|LTR|ERV1	247960	NM_001282471	100533178		NM_001282471		PRORY	CYorf17	PRORY Y-linked lncRNA	ncRNA
67292	chr14	69400771	69401130	+	0	NA	intron (NM_018375, intron 1 of 6)	FLAM_C|SINE|Alu	2258	NM_001252150	55334		NM_018375	ENSG00000029364	SLC39A9	ZIP-9|ZIP9	solute carrier family 39 member 9	protein-coding
94456	chr17	29254201	29255230	+	0	NA	TTS (NM_005208)	TTS (NM_005208)	7856	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
66769	chr14	64541701	64542980	+	0	NA	exon (NM_021979, exon 1 of 1)	exon (NM_021979, exon 1 of 1)	1872	NM_021979	3306		NM_021979	ENSG00000126803	HSPA2	HSP70-2|HSP70-3	heat shock protein family A (Hsp70) member 2	protein-coding
105494	chr17	83090001	83090680	+	0	NA	intron (NM_001004431, intron 2 of 3).2	intron (NM_001004431, intron 2 of 3).2	9194	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
115210	chr19	14481521	14481780	+	0	NA	intron (NM_202494, intron 1 of 5)	AluSc|SINE|Alu	-6296	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
155290	chr22	38109401	38111130	+	0	NA	intron (NM_025045, intron 1 of 13)	intron (NM_025045, intron 1 of 13)	419	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
192645	chr6	26165371	26165950	+	0	NA	intron (NM_138720, intron 1 of 1)	intron (NM_138720, intron 1 of 1)	7538	NM_021063	3017		NM_021063	ENSG00000158373	H2BC5	H2B.1B|H2B/a|H2B/b|H2B/g|H2B/h|H2B/k|H2B/l|H2BFA|H2BFB|H2BFG|H2BFH|H2BFK|H2BFL|HIRIP2|HIST1H2BC|HIST1H2BD|HIST1H2BE|HIST1H2BF|HIST1H2BG|HIST1H2BI|dJ221C16.6	H2B clustered histone 5	protein-coding
181385	chr5	40672251	40672750	+	0	NA	Intergenic	Intergenic	-7415	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
87144	chr16	69178601	69178930	+	0	NA	Intergenic	AluY|SINE|Alu	-8382	NM_006750	6645		NM_006750	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin beta 2	protein-coding
106367	chr18	13273701	13274630	+	0	NA	intron (NM_001378100, intron 1 of 6)	intron (NM_001378100, intron 1 of 6)	-3197	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
24234	chr1	236156371	236157480	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	14386	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
175479	chr4	73087301	73087600	+	0	NA	intron (NM_032217, intron 29 of 33)	L1MD3|LINE|L1	-17691	NM_001300729	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
236369	chrX	70917571	70917930	+	0	NA	Intergenic	AluSx3|SINE|Alu	-9039	NM_031276	56159		NM_031276	ENSG00000120498	TEX11	MZIP4|SPGFX2|Spo22|TGC1|TSGA3|ZIP4|ZIP4H	testis expressed 11	protein-coding
144884	chr20	36924521	36924780	+	0	NA	intron (NM_001363733, intron 6 of 15)	LTR56|LTR|ERV1	27058	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
220026	chr8	90982651	90983150	+	0	NA	intron (NM_001190972, intron 1 of 5)	intron (NM_001190972, intron 1 of 5)	2177	NM_001363275	100127983		NM_001190972	ENSG00000253250	C8orf88	-	chromosome 8 open reading frame 88	protein-coding
158422	chr22	50543701	50545290	+	0	NA	Intergenic	CpG	-1404	NM_138433	113730		NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
46000	chr11	121544751	121545350	+	0	NA	intron (NM_003105, intron 13 of 47)	intron (NM_003105, intron 13 of 47)	-63261	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
142015	chr20	1650951	1651600	+	0	NA	intron (NM_018556, intron 1 of 5)	MER88|LTR|ERVL	6504	NM_080816	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
157634	chr22	46111271	46111630	+	0	NA	non-coding (NR_027033, exon 6 of 6)	non-coding (NR_027033, exon 6 of 6)	-1299	NR_029478	406883		NR_029478	ENSG00000283990	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	ncRNA
117168	chr19	19343601	19344000	+	0	NA	intron (NM_015329, intron 9 of 18)	intron (NM_015329, intron 9 of 18)	22971	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
140313	chr2	232488401	232488600	+	0	NA	promoter-TSS (NM_004826)	promoter-TSS (NM_004826)	-666	NM_004826	9427		NM_004826	ENSG00000171551	ECEL1	DA5D|DINE|ECEX|XCE	endothelin converting enzyme like 1	protein-coding
100188	chr17	58666321	58667100	+	0	NA	intron (NM_198393, intron 1 of 32)	intron (NM_198393, intron 1 of 32)	25335	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
53481	chr12	66169221	66170630	+	0	NA	promoter-TSS (NM_016056)	promoter-TSS (NM_016056)	71	NM_016056	51643		NM_016056	ENSG00000155957	TMBIM4	CGI-119|GAAP|LFG4|S1R|ZPRO	transmembrane BAX inhibitor motif containing 4	protein-coding
196132	chr6	42406351	42406650	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	45551	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
67561	chr14	71328001	71328400	+	0	NA	intron (NM_001354287, intron 2 of 23)	intron (NM_001354287, intron 2 of 23)	7724	NM_015556	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
72964	chr15	40507001	40507580	+	0	NA	Intergenic	CpG	25260	NR_002208	359821		NR_002208		MRPL42P5	-	mitochondrial ribosomal protein L42 pseudogene 5	pseudo
73270	chr15	41847451	41848100	+	0	NA	TTS (NM_016642)	TTS (NM_016642)	8962	NM_001114633	100137049		NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2 group IVB	protein-coding
169802	chr3	176923851	176923950	+	0	NA	Intergenic	Intergenic	-106899	NR_110819	101928684		NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
172877	chr4	3369871	3370330	+	0	NA	promoter-TSS (NM_198227)	promoter-TSS (NM_198227)	-98	NM_198227	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
28804	chr10	62188401	62188800	+	0	NA	Intergenic	L2c|LINE|L2	80244	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
37952	chr11	34448951	34449130	+	0	NA	intron (NM_001752, intron 1 of 12)	intron (NM_001752, intron 1 of 12)	10106	NM_001752	847		NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
188315	chr5	151208801	151209000	+	0	NA	intron (NM_015621, intron 1 of 8)	MIR3|SINE|MIR	-3234	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
61845	chr13	76884071	76884480	+	0	NA	3' UTR (NM_138444, exon 1 of 1)	3' UTR (NM_138444, exon 1 of 1)	2130	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
146926	chr20	51666801	51667630	+	0	NA	intron (NM_006045, intron 13 of 27)	intron (NM_006045, intron 13 of 27)	101175	NM_006045	10079		NM_006045	ENSG00000054793	ATP9A	ATPIIA|NEDGBA	ATPase phospholipid transporting 9A (putative)	protein-coding
239230	chrY	12945171	12945680	+	0	NA	Intergenic	AluSz6|SINE|Alu	39720	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
202595	chr6	158710301	158710500	+	0	NA	intron (NM_001242395, intron 8 of 15)	Ricksha_c|DNA|MULE-MuDR	46997	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
75683	chr15	67828851	67829400	+	0	NA	intron (NM_001365915, intron 2 of 8)	CpG-8353	3616	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
42406	chr11	69050951	69051050	+	0	NA	intron (NM_139075, intron 1 of 24)	intron (NM_139075, intron 1 of 24)	2068	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
238920	chrX	154732671	154733450	+	0	NA	intron (NR_104114, intron 1 of 8)	MER74C|LTR|ERVL	18017	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
203744	chr7	1156701	1156900	+	0	NA	intron (NM_001365383, intron 3 of 5)	intron (NM_001365383, intron 3 of 5)	3396	NM_001365381	90637		NM_182491	ENSG00000178381	ZFAND2A	AIRAP	zinc finger AN1-type containing 2A	protein-coding
24452	chr1	243827301	243827500	+	0	NA	intron (NM_005465, intron 2 of 13)	intron (NM_005465, intron 2 of 13)	15882	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
110608	chr19	2188971	2189130	+	0	NA	intron (NM_032482, intron 3 of 27)	intron (NM_032482, intron 3 of 27)	25117	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
90649	chr17	1671451	1671880	+	0	NA	intron (NM_006445, intron 24 of 42)	AluY|SINE|Alu	13202	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
8080	chr1	39028951	39029250	+	0	NA	intron (NM_004552, intron 2 of 2)	AluSq10|SINE|Alu	2750	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
153202	chr22	23854671	23855930	+	0	NA	intron (NR_003082, intron 4 of 4)	SVA_E|Retroposon|SVA	-1403	NR_104248	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
169155	chr3	156540801	156541430	+	0	NA	3' UTR (NM_001308197, exon 5 of 5)	3' UTR (NM_001308197, exon 5 of 5)	13010	NM_001308205	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
185768	chr5	132334871	132335100	+	0	NA	intron (NM_003059, intron 7 of 9)	intron (NM_003059, intron 7 of 9)	30614	NR_037500	100500865		NR_037500	ENSG00000263597	MIR3936	mir-3936	microRNA 3936	ncRNA
15112	chr1	148633671	148633830	+	0	NA	intron (NM_001364008, intron 2 of 4)	MER96B|DNA|hAT-Tip100	-38033	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
3865	chr1	16972451	16972750	+	0	NA	3' UTR (NM_014675, exon 37 of 37)	3' UTR (NM_014675, exon 37 of 37)	8020	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
182601	chr5	66065671	66065830	+	0	NA	intron (NM_001006600, intron 21 of 23)	MIR|SINE|MIR	-78550	NM_001077199	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
53163	chr12	57943401	57944180	+	0	NA	intron (NM_001320408, intron 1 of 5).2	intron (NM_001320408, intron 1 of 5).2	2223	NM_033276	91419		NM_033276	ENSG00000166896	ATP23	KUB3|XRCC6BP1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding
144311	chr20	34823951	34826730	+	0	NA	intron (NM_014071, intron 1 of 14)	CpG	311	NM_014071	23054		NM_014071	ENSG00000198646	NCOA6	AIB3|ASC2|NRC|PRIP|RAP250|TRBP	nuclear receptor coactivator 6	protein-coding
40388	chr11	64005801	64006000	+	0	NA	intron (NM_014067, intron 4 of 10)	intron (NM_014067, intron 4 of 10)	20047	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
147422	chr20	58894551	58894650	+	0	NA	intron (NR_132272, intron 1 of 3)	intron (NR_132272, intron 1 of 3)	2437	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
114390	chr19	12603301	12604140	+	0	NA	intron (NM_020714, intron 2 of 4)	AluSx3|SINE|Alu	7093	NM_020714	57474		NM_020714	ENSG00000188033	ZNF490	-	zinc finger protein 490	protein-coding
136134	chr2	174012451	174013350	+	0	NA	Intergenic	CpG	-12380	NR_136175	100128905		NR_136175	ENSG00000260868	LINC01960	-	long intergenic non-protein coding RNA 1960	ncRNA
110958	chr19	2908671	2909030	+	0	NA	intron (NM_001319083, intron 1 of 3)	L1MB7|LINE|L1	1742	NM_001319083	126295		NM_173480	ENSG00000171970	ZNF57	ZNF424	zinc finger protein 57	protein-coding
154310	chr22	31954521	31955200	+	0	NA	intron (NM_003405, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	-9498	NM_015372	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
148634	chr21	5760271	5760500	+	0	NA	Intergenic	AluJr4|SINE|Alu	191181	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
11085	chr1	85275571	85277650	+	0	NA	promoter-TSS (NM_003921)	promoter-TSS (NM_003921)	22	NM_001320715	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
40512	chr11	64278471	64279250	+	0	NA	intron (NM_032989, intron 2 of 3)	intron (NM_032989, intron 2 of 3)	5805	NM_032989	572		NM_004322	ENSG00000002330	BAD	BBC2|BCL2L8	BCL2 associated agonist of cell death	protein-coding
88668	chr16	85662571	85663130	+	0	NA	intron (NM_001278184, intron 8 of 14)	intron (NM_001278184, intron 8 of 14)	26104	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
237921	chrX	132022051	132022500	+	0	NA	Intergenic	Intergenic	-1027	NM_001042453	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
115831	chr19	16495721	16497200	+	0	NA	promoter-TSS (NM_145046)	promoter-TSS (NM_145046)	66	NM_032207	84167		NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
228129	chr9	96657171	96657700	+	0	NA	Intergenic	Intergenic	-2118	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
217973	chr8	38355701	38356100	+	0	NA	intron (NM_017778, intron 1 of 9)	MIR|SINE|MIR	26371	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
49251	chr12	19450501	19450800	+	0	NA	intron (NM_001267043, intron 1 of 8)	AluJo|SINE|Alu	10051	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
168023	chr3	136889071	136889430	+	0	NA	intron (NM_001291999, intron 1 of 3)	LTR12C|LTR|ERV1	27042	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
75294	chr15	65182951	65183830	+	0	NA	intron (NM_006660, intron 1 of 13)	AluY|SINE|Alu	1952	NR_133680	10845		NM_006660	ENSG00000166855	CLPX	EPP2	caseinolytic mitochondrial matrix peptidase chaperone subunit X	protein-coding
155596	chr22	38768151	38768250	+	0	NA	Intergenic	Intergenic	-12202	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
115516	chr19	15427851	15427950	+	0	NA	intron (NM_021241, intron 3 of 7)	intron (NM_021241, intron 3 of 7)	4861	NM_001330395	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
182951	chr5	71228051	71228350	+	0	NA	intron (NR_033968, intron 1 of 3).5	Tigger17a|DNA|TcMar-Tigger	-20069	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
191579	chr6	12014571	12015200	+	0	NA	intron (NM_002114, intron 1 of 8)	MLT1I|LTR|ERVL-MaLR	2573	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
180735	chr5	31855251	31855550	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	80759	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
57699	chr12	122853921	122854180	+	0	NA	exon (NM_003959, exon 8 of 32)	exon (NM_003959, exon 8 of 32)	18593	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
89554	chr16	89243171	89243530	+	0	NA	Intergenic	MER50|LTR|ERV1	25647	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
227771	chr9	93117971	93118650	+	0	NA	Intergenic	Intergenic	15941	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
88377	chr16	84602801	84604850	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	14253	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
173920	chr4	25310651	25311380	+	0	NA	Intergenic	Kanga2_a|DNA|TcMar-Tc2	-1759	NM_001318148	29063		NM_014150	ENSG00000168228	ZCCHC4	HSPC052|ZGRF4	zinc finger CCHC-type containing 4	protein-coding
74621	chr15	60672551	60672650	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	-8969	NR_120318	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
230622	chr9	128632671	128633430	+	0	NA	TTS (NM_052844)	TTS (NM_052844)	23800	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
62419	chr13	99299771	99300300	+	0	NA	intron (NM_004951, intron 1 of 1)	intron (NM_004951, intron 1 of 1)	7364	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
2601	chr1	9912051	9912480	+	0	NA	Intergenic	L2c|LINE|L2	-1996	NM_001012329	56998		NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
33200	chr10	113849971	113850200	+	0	NA	exon (NM_014881, exon 2 of 9)	exon (NM_014881, exon 2 of 9)	3997	NM_014881	9937		NM_014881	ENSG00000198924	DCLRE1A	PSO2|SNM1|SNM1A	DNA cross-link repair 1A	protein-coding
89042	chr16	88432901	88433100	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-20280	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
182865	chr5	69741471	69741630	+	0	NA	TTS (NR_134269)	TTS (NR_134269)	588	NR_134269	102724392		NR_134268		LINC02197	-	long intergenic non-protein coding RNA 2197	ncRNA
152539	chr22	20991751	20992700	+	0	NA	exon (NM_006767, exon 10 of 21)	exon (NM_006767, exon 10 of 21)	-9697	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
166648	chr3	119891951	119892430	+	0	NA	intron (NM_001146156, intron 7 of 10)	L2c|LINE|L2	109480	NM_022002	8856		NM_003889	ENSG00000144852	NR1I2	BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR	nuclear receptor subfamily 1 group I member 2	protein-coding
143082	chr20	21560301	21560500	+	0	NA	Intergenic	Intergenic	-9624	NR_109880	101929625		NR_109880		LINC01727	IRENA	long intergenic non-protein coding RNA 1727	ncRNA
48505	chr12	9867601	9867830	+	0	NA	intron (NM_005127, intron 1 of 4)	intron (NM_005127, intron 1 of 4)	2144	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
77351	chr15	82646251	82646680	+	0	NA	intron (NM_001365240, intron 1 of 12)	CpG	898	NM_001365244	64506		NM_030594	ENSG00000214575	CPEB1	CPE-BP1|CPEB|CPEB-1|h-CPEB|hCPEB-1	cytoplasmic polyadenylation element binding protein 1	protein-coding
92264	chr17	8017771	8018330	+	0	NA	intron (NM_000180, intron 19 of 19)	intron (NM_000180, intron 19 of 19)	15435	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
93970	chr17	21705751	21706180	+	0	NA	Intergenic	Intergenic	13442	NM_001194958	100134444		NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium inwardly rectifying channel subfamily J member 18	protein-coding
148733	chr21	7141151	7142920	+	0	NA	Intergenic	Intergenic	77609	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
222820	chr8	142474951	142476650	+	0	NA	intron (NM_001702, intron 3 of 30)	CpG-27652	26151	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
182739	chr5	68271401	68271600	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-17019	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
77896	chr15	89133821	89134080	+	0	NA	intron (NM_152924, intron 3 of 10)	AluY|SINE|Alu	45494	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
47597	chr12	4908851	4909180	+	0	NA	promoter-TSS (NM_000217)	promoter-TSS (NM_000217)	-890	NM_000217	3736		NM_000217	ENSG00000111262	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel subfamily A member 1	protein-coding
206786	chr7	36748121	36748580	+	0	NA	Intergenic	Intergenic	-23801	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
184367	chr5	97178471	97178630	+	0	NA	intron (NM_018343, intron 2 of 9)	intron (NM_018343, intron 2 of 9)	4697	NM_018343	55781		NM_018343	ENSG00000058729	RIOK2	RIO2	RIO kinase 2	protein-coding
128144	chr2	48359301	48359500	+	0	NA	intron (NR_164691, intron 3 of 4)	AluSz|SINE|Alu	44718	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
80883	chr16	3655471	3655630	+	0	NA	intron (NM_005223, intron 2 of 8)	intron (NM_005223, intron 2 of 8)	846	NM_001351825	1773		NM_005223	ENSG00000213918	DNASE1	DNL1|DRNI	deoxyribonuclease 1	protein-coding
27736	chr10	35126401	35129100	+	0	NA	intron (NM_183060, intron 1 of 5)	CpG	293	NM_183060	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
134413	chr2	142980701	142980900	+	0	NA	intron (NM_001199241, intron 9 of 14)	intron (NM_001199241, intron 9 of 14)	103136	NM_003937	8942		NM_003937	ENSG00000115919	KYNU	KYNUU|VCRL2	kynureninase	protein-coding
23534	chr1	229186521	229186930	+	0	NA	Intergenic	Intergenic	-11924	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
36912	chr11	10795111	10796600	+	0	NA	Intergenic	AluSp|SINE|Alu	5753	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
135015	chr2	154437071	154437430	+	0	NA	non-coding (NR_161181, exon 5 of 5)	non-coding (NR_161181, exon 5 of 5)	20188	NR_161181	100144595		NR_161181	ENSG00000224675	GALNT13-AS1	-	GALNT13 antisense RNA 1	ncRNA
52205	chr12	54371351	54371600	+	0	NA	exon (NM_001130967, exon 5 of 8)	exon (NM_001130967, exon 5 of 8)	-6989	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
171629	chr3	197519031	197519300	+	0	NA	intron (NM_203315, intron 5 of 6)	intron (NM_203315, intron 5 of 6)	-9504	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
150535	chr21	42979421	42979730	+	0	NA	intron (NM_001320694, intron 1 of 10)	AluY|SINE|Alu	5013	NM_004571	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
81410	chr16	8621321	8622330	+	0	NA	intron (NM_024109, intron 1 of 10)	CpG	127	NR_134608	79091		NM_024109	ENSG00000067365	METTL22	C16orf68	methyltransferase 22, Kin17 lysine	protein-coding
180869	chr5	32712651	32712950	+	0	NA	intron (NM_001204375, intron 1 of 7)	CpG	1479	NM_001204375	4883		NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|BOMOS|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor 3	protein-coding
74570	chr15	60540121	60541030	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	51951	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
204484	chr7	4747751	4747850	+	0	NA	intron (NM_001037165, intron 2 of 8)	AluJr|SINE|Alu	-27823	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
51233	chr12	50784351	50785050	+	0	NA	intron (NM_005171, intron 2 of 6)	L2a|LINE|L2	20599	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
224575	chr9	19999121	19999850	+	0	NA	Intergenic	Intergenic	-210448	NM_001193288	25769		NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
1203	chr1	2253221	2253930	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	25256	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
216442	chr8	19481801	19482350	+	0	NA	intron (NR_148900, intron 3 of 9)	intron (NR_148900, intron 3 of 9)	120470	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
117372	chr19	19573351	19573450	+	0	NA	intron (NM_025245, intron 2 of 7)	intron (NM_025245, intron 2 of 7)	35135	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
85357	chr16	50247251	50247700	+	0	NA	Intergenic	AluJb|SINE|Alu	-19076	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
199983	chr6	127991651	127992700	+	0	NA	intron (NM_001291981, intron 22 of 32).2	intron (NM_001291981, intron 22 of 32).2	-35690	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
218691	chr8	58552721	58554450	+	0	NA	intron (NM_001007067, intron 1 of 8)	(GGGCTG)n|Simple_repeat|Simple_repeat	324	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
172071	chr4	1030851	1031680	+	0	NA	Intergenic	Intergenic	18801	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
31438	chr10	95830871	95831030	+	0	NA	intron (NM_001164183, intron 2 of 7)	L2c|LINE|L2	74787	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
229355	chr9	120928201	120929630	+	0	NA	intron (NM_001190945, intron 1 of 8)	CpG	258	NM_001190945	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
94213	chr17	28604801	28605000	+	0	NA	intron (NR_040012, intron 2 of 2)	SVA_D|Retroposon|SVA	5767	NR_040012	100506436		NR_040012		SPAG5-AS1	-	SPAG5 antisense RNA 1	ncRNA
80721	chr16	3098221	3099230	+	0	NA	intron (NM_032805, intron 1 of 5)	intron (NM_032805, intron 1 of 5)	569	NM_001282415	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
185796	chr5	132421771	132422250	+	0	NA	intron (NR_161242, intron 2 of 3)	AluY|SINE|Alu	11081	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
97732	chr17	44375821	44376350	+	0	NA	exon (NM_000419, exon 24 of 30)	exon (NM_000419, exon 24 of 30)	-12232	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
219035	chr8	65659321	65659780	+	0	NA	intron (NM_014637, intron 1 of 7)	LTR10G|LTR|ERV1	-10323	NM_001145838	9650		NM_014637	ENSG00000066855	MTFR1	CHPPR|FAM54A2	mitochondrial fission regulator 1	protein-coding
132291	chr2	105072171	105072400	+	0	NA	intron (NM_182640, intron 4 of 10)	Tigger13a|DNA|TcMar-Tigger	30659	NR_110227	101927492		NR_110227	ENSG00000231851	MRPS9-AS1	UTAT33	MRPS9 antisense RNA 1	ncRNA
199212	chr6	111797751	111798950	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-38433	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
166960	chr3	125356001	125356200	+	0	NA	intron (NM_001348427, intron 1 of 9)	intron (NM_001348427, intron 1 of 9)	1180	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
141186	chr2	239297071	239297870	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-7992	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
167275	chr3	128621621	128622900	+	0	NA	exon (NM_002950, exon 9 of 10)	exon (NM_002950, exon 9 of 10)	28558	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
228994	chr9	113576171	113576330	+	0	NA	intron (NM_001351526, intron 2 of 8)	MER5A1|DNA|hAT-Charlie	-4678	NM_001282922	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
21363	chr1	204992301	204992700	+	0	NA	intron (NM_001160331, intron 24 of 26)	intron (NM_001160331, intron 24 of 26)	48274	NM_001160331	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
4129	chr1	19328151	19328250	+	0	NA	intron (NR_109848, intron 8 of 9)	intron (NR_109848, intron 8 of 9)	15874	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
224462	chr9	15510701	15511930	+	0	NA	promoter-TSS (NM_001317900)	promoter-TSS (NM_001317900)	-296	NM_001128217	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
168329	chr3	141741201	141741530	+	0	NA	intron (NM_001201370, intron 1 of 1)	intron (NM_001201370, intron 1 of 1)	3067	NM_014245	9616		NM_014245	ENSG00000114125	RNF7	CKBBP1|ROC2|SAG|rbx2	ring finger protein 7	protein-coding
120374	chr19	43627071	43627430	+	0	NA	exon (NM_145296, exon 3 of 9)	exon (NM_145296, exon 3 of 9)	-7621	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
3567	chr1	16164301	16164800	+	0	NA	Intergenic	MIR|SINE|MIR	-8481	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
178727	chr4	152850301	152850680	+	0	NA	intron (NM_001025593, intron 2 of 7)	intron (NM_001025593, intron 2 of 7)	70536	NM_001025595	27236		NM_014447	ENSG00000164144	ARFIP1	HSU52521	ADP ribosylation factor interacting protein 1	protein-coding
136616	chr2	178891401	178891700	+	0	NA	intron (NM_173648, intron 8 of 23)	intron (NM_173648, intron 8 of 23)	-84127	NM_001256850	7273		NM_003319	ENSG00000155657	TTN	CMD1G|CMH9|CMPD4|CMYP5|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD	titin	protein-coding
87785	chr16	75433041	75434580	+	0	NA	promoter-TSS (NM_006324)	promoter-TSS (NM_006324)	-307	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
103170	chr17	77435051	77435680	+	0	NA	intron (NM_001293696, intron 1 of 9)	MIR3|SINE|MIR	-15384	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
155568	chr22	38734941	38735150	+	0	NA	3' UTR (NM_015374, exon 18 of 18)	3' UTR (NM_015374, exon 18 of 18)	20421	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
148116	chr20	63440921	63441590	+	0	NA	intron (NM_001382235, intron 5 of 16)	intron (NM_001382235, intron 5 of 16)	31400	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
32193	chr10	101708151	101708450	+	0	NA	Intergenic	Intergenic	-13005	NM_001323541	6468		NM_022039	ENSG00000107829	FBXW4	DAC|FBW4|FBWD4|SHFM3|SHSF3	F-box and WD repeat domain containing 4	protein-coding
236110	chrX	57282421	57283080	+	0	NA	Intergenic	L1PREC2|LINE|L1	-3927	NM_174912	158584		NM_174912	ENSG00000165591	FAAH2	AMDD	fatty acid amide hydrolase 2	protein-coding
161244	chr3	39233121	39233380	+	0	NA	Intergenic	LTR35B|LTR|ERV1	-40655	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
105306	chr17	82527251	82527550	+	0	NA	intron (NM_004514, intron 1 of 8)	AluSx1|SINE|Alu	7668	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
203676	chr7	1015471	1015630	+	0	NA	intron (NR_146964, intron 1 of 4)	intron (NR_146964, intron 1 of 4)	7476	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
226282	chr9	68317551	68317850	+	0	NA	Intergenic	SATR1|Satellite|Satellite	14833	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
101190	chr17	65294201	65294500	+	0	NA	Intergenic	Intergenic	156980	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
201696	chr6	149647071	149647430	+	0	NA	intron (NM_007044, intron 1 of 10)	AluSx3|SINE|Alu	1464	NM_007044	11104		NM_007044	ENSG00000186625	KATNA1	-	katanin catalytic subunit A1	protein-coding
157951	chr22	49801921	49802630	+	0	NA	intron (NR_146335, intron 4 of 13)	CpG	22056	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
78794	chr15	99447371	99448130	+	0	NA	Intergenic	Intergenic	-117667	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
42436	chr11	69294901	69295580	+	0	NA	5' UTR (NM_001293294, exon 2 of 2)	5' UTR (NM_001293294, exon 2 of 2)	1085	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
28834	chr10	62381271	62382000	+	0	NA	intron (NM_199450, intron 2 of 4)	intron (NM_199450, intron 2 of 4)	-6508	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
226913	chr9	79572601	79574080	+	0	NA	exon (NM_001351543, exon 1 of 20)	exon (NM_001351543, exon 1 of 20)	163	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
200593	chr6	136609551	136610050	+	0	NA	intron (NM_005923, intron 18 of 29)	AluSz|SINE|Alu	-19314	NR_125858	101928461		NR_125858	ENSG00000234263	MAP3K5-AS1	-	MAP3K5 antisense RNA 1	ncRNA
62843	chr13	109789951	109790250	+	0	NA	Intergenic	Intergenic	-3517	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
188015	chr5	149552751	149552850	+	0	NA	Intergenic	AluSz|SINE|Alu	-1361	NM_001025105	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
36657	chr11	8021301	8021500	+	0	NA	Intergenic	AluSz|SINE|Alu	-4891	NR_125366	103581031		NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility 23	ncRNA
147600	chr20	62057951	62058050	+	0	NA	intron (NM_003185, intron 1 of 14)	intron (NM_003185, intron 1 of 14)	-6802	NR_130463	100422838		NR_130463	ENSG00000265306	MIR3195	-	microRNA 3195	ncRNA
184955	chr5	113090871	113091230	+	0	NA	intron (NM_001085377, intron 8 of 18)	intron (NM_001085377, intron 8 of 18)	114252	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
170220	chr3	184171501	184171900	+	0	NA	3' UTR (NM_004423, exon 15 of 15)	3' UTR (NM_004423, exon 15 of 15)	-3146	NM_001025205	1173		NM_004068	ENSG00000161203	AP2M1	AP50|CLAPM1|MRD60|mu2	adaptor related protein complex 2 subunit mu 1	protein-coding
96084	chr17	39608921	39609750	+	0	NA	Intergenic	Intergenic	-1415	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
99596	chr17	50537601	50537800	+	0	NA	intron (NR_135675, intron 2 of 2)	intron (NR_135675, intron 2 of 2)	1054	NR_135675	105371824		NR_135675	ENSG00000250286	LOC105371824	-	uncharacterized LOC105371824	ncRNA
190643	chr5	181230151	181230900	+	0	NA	intron (NM_201627, intron 1 of 7)	AluSc8|SINE|Alu	7244	NR_045218	90933		NM_033549	ENSG00000146063	TRIM41	RINCK	tripartite motif containing 41	protein-coding
54059	chr12	76022351	76022650	+	0	NA	Intergenic	Intergenic	9276	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
103624	chr17	78739451	78740500	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSx1|SINE|Alu	-3073	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
157601	chr22	46012501	46012700	+	0	NA	Intergenic	Intergenic	5984	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
139287	chr2	219510951	219511050	+	0	NA	Intergenic	(CCAGC)n|Simple_repeat|Simple_repeat	-3482	NM_182847	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
209289	chr7	75985751	75985850	+	0	NA	exon (NM_001367562, exon 14 of 17)	exon (NM_001367562, exon 14 of 17)	8795	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
140013	chr2	230986821	230987880	+	0	NA	non-coding (NR_033879, exon 5 of 6)	non-coding (NR_033879, exon 5 of 6)	8682	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
236069	chrX	56572801	56573280	+	0	NA	Intergenic	Intergenic	9413	NM_013444	29978		NM_013444	ENSG00000188021	UBQLN2	ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2	ubiquilin 2	protein-coding
24204	chr1	236089401	236089630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-24425	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
154163	chr22	31289501	31291770	+	0	NA	intron (NM_052880, intron 3 of 5)	intron (NM_052880, intron 3 of 5)	1853	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
106067	chr18	9108851	9109930	+	0	NA	intron (NM_021074, intron 1 of 7)	intron (NM_021074, intron 1 of 7)	6691	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
142315	chr20	3661851	3662150	+	0	NA	intron (NM_022139, intron 1 of 5)	intron (NM_022139, intron 1 of 5)	1399	NM_022139	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
184605	chr5	103258071	103260180	+	0	NA	promoter-TSS (NM_001377287)	promoter-TSS (NM_001377287)	95	NM_001377285	90355		NM_033211	ENSG00000181751	MACIR	C5orf30	macrophage immunometabolism regulator	protein-coding
46030	chr11	122662371	122662800	+	0	NA	intron (NM_032873, intron 1 of 13)	AluSp|SINE|Alu	6863	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
147950	chr20	62958501	62958900	+	0	NA	intron (NM_022082, intron 3 of 12)	intron (NM_022082, intron 3 of 12)	5991	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
220326	chr8	98940901	98941380	+	0	NA	intron (NM_001256312, intron 1 of 12)	CpG	1470	NM_001256312	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
23115	chr1	226685101	226685830	+	0	NA	intron (NM_002221, intron 2 of 7)	L2c|LINE|L2	-10397	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
181085	chr5	36876401	36877700	+	0	NA	promoter-TSS (NR_046262)	promoter-TSS (NR_046262)	281	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
191546	chr6	11534421	11534880	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-3099	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
29261	chr10	69127201	69128330	+	0	NA	intron (NM_001318946, intron 1 of 7)	AluJo|SINE|Alu	3587	NM_001318944	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
97474	chr17	43773001	43773750	+	0	NA	intron (NM_004090, intron 2 of 2)	intron (NM_004090, intron 2 of 2)	5602	NM_004090	1845		NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
61062	chr13	48297051	48297350	+	0	NA	intron (NR_046414, intron 2 of 2)	intron (NR_046414, intron 2 of 2)	6502	NR_046414	100862704		NR_046414	ENSG00000231473	RB1-DT	LINC00441|ncRNA-RB1	RB1 divergent transcript	ncRNA
173452	chr4	8406851	8407350	+	0	NA	intron (NM_001375787, intron 6 of 17)	LTR13|LTR|ERVK	21348	NM_001375787	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
184861	chr5	112166501	112166700	+	0	NA	intron (NM_022140, intron 22 of 22)	intron (NM_022140, intron 22 of 22)	5115	NR_002922	654322		NR_002922	ENSG00000238363	SNORA13	ACA13	small nucleolar RNA, H/ACA box 13	snoRNA
239084	chrY	10458071	10458650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	547562	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
229967	chr9	126720701	126721080	+	0	NA	Intergenic	Intergenic	-84116	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
81151	chr16	4411851	4412580	+	0	NA	intron (NM_001351729, intron 3 of 27)	intron (NM_001351729, intron 3 of 27)	3682	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
85159	chr16	46620071	46620230	+	0	NA	intron (NM_001324319, intron 1 of 11)	L1MA9|LINE|L1	1229	NM_024745	79801		NM_024745	ENSG00000171241	SHCBP1	PAL	SHC binding and spindle associated 1	protein-coding
206264	chr7	29336421	29336680	+	0	NA	intron (NM_001293070, intron 2 of 13)	AluJr4|SINE|Alu	-127580	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
41634	chr11	66476701	66477080	+	0	NA	3' UTR (NM_001243135, exon 7 of 7)	3' UTR (NM_001243135, exon 7 of 7)	3359	NR_120586	101928069		NR_120586	ENSG00000255517	DPP3-DT	-	DPP3 divergent transcript	ncRNA
8637	chr1	41726451	41727130	+	0	NA	intron (NM_024503, intron 1 of 8)	L3|LINE|CR1	192132	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
997	chr1	1844621	1844880	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	46337	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
187539	chr5	142736251	142736550	+	0	NA	Intergenic	Intergenic	-9200	NR_110558	101926975		NR_110558	ENSG00000236714	LINC01844	-	long intergenic non-protein coding RNA 1844	ncRNA
138796	chr2	216113671	216113830	+	0	NA	intron (NM_021141, intron 2 of 20)	MLT1F1|LTR|ERVL-MaLR	4402	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
157865	chr22	49501171	49501330	+	0	NA	intron (NR_110523, intron 1 of 4)	(ATCACC)n|Simple_repeat|Simple_repeat	42216	NR_037440	100500882		NR_037440	ENSG00000264139	MIR3667	-	microRNA 3667	ncRNA
3186	chr1	13722271	13722430	+	0	NA	intron (NM_001135610, intron 2 of 7)	intron (NM_001135610, intron 2 of 7)	17495	NM_012231	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
150902	chr21	44158701	44158900	+	0	NA	TTS (NR_146631).2	TTS (NR_146631).2	1062	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
136962	chr2	190408301	190410500	+	0	NA	intron (NM_001375986, intron 1 of 7)	intron (NM_001375986, intron 1 of 7)	542	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
50959	chr12	49543671	49543830	+	0	NA	intron (NM_001314030, intron 5 of 14)	MIRb|SINE|MIR	4720	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
81858	chr16	11629301	11629950	+	0	NA	Intergenic	Intergenic	-38830	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
59331	chr13	24510171	24510330	+	0	NA	intron (NM_006437, intron 1 of 33)	L1ME4a|LINE|L1	2528	NM_006437	143		NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	poly(ADP-ribose) polymerase family member 4	protein-coding
230400	chr9	128110601	128110800	+	0	NA	TTS (NR_033374)	TTS (NR_033374)	8034	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
29592	chr10	71735671	71737830	+	0	NA	intron (NM_022124, intron 32 of 67)	L2b|LINE|L2	1100	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
109013	chr18	79714651	79715650	+	0	NA	exon (NM_001202504, exon 8 of 13)	exon (NM_001202504, exon 8 of 13)	33720	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
28017	chr10	43201671	43203180	+	0	NA	intron (NM_001282862, intron 3 of 12)	CpG	27314	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
216711	chr8	22248601	22248800	+	0	NA	intron (NM_001722, intron 6 of 8)	intron (NM_001722, intron 6 of 8)	3567	NM_001722	661		NM_001722	ENSG00000168495	POLR3D	BN51T|C53|RPC4|RPC53|TSBN51	RNA polymerase III subunit D	protein-coding
113258	chr19	8508001	8508380	+	0	NA	Intergenic	Intergenic	-5550	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
91680	chr17	5583971	5585080	+	0	NA	promoter-TSS (NM_001033053)	promoter-TSS (NM_001033053)	-16	NM_014922	22861		NM_014922	ENSG00000091592	NLRP1	AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|JRRP|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
114738	chr19	13211451	13212180	+	0	NA	intron (NM_023035, intron 43 of 46)	intron (NM_023035, intron 43 of 46)	61404	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
119509	chr19	40522571	40522730	+	0	NA	intron (NM_020971, intron 16 of 35)	AluSx|SINE|Alu	-7841	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
201940	chr6	151482421	151482900	+	0	NA	Intergenic	Intergenic	-11357	NM_025059	80129		NM_025059	ENSG00000120262	CCDC170	C6orf97|bA282P11.1	coiled-coil domain containing 170	protein-coding
150652	chr21	43414301	43416100	+	0	NA	3' UTR (NM_001320643, exon 14 of 14).2	3' UTR (NM_001320643, exon 14 of 14).2	11931	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
66508	chr14	61712771	61713700	+	0	NA	intron (NM_001243084, intron 1 of 14)	L2c|LINE|L2	15613	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
39366	chr11	59618671	59618830	+	0	NA	Intergenic	Intergenic	-2976	NM_002556	5007		NM_002556	ENSG00000110048	OSBP	OSBP1	oxysterol binding protein	protein-coding
190744	chr6	399571	400130	+	0	NA	intron (NR_046000, intron 6 of 9)	intron (NR_046000, intron 6 of 9)	8098	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
103723	chr17	78837971	78838130	+	0	NA	intron (NM_001385172, intron 2 of 21)	AluJr|SINE|Alu	2764	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
69523	chr14	96361451	96362500	+	0	NA	intron (NM_018036, intron 1 of 41)	intron (NM_018036, intron 1 of 41)	1366	NM_018036	55102		NM_018036	ENSG00000066739	ATG2B	BLTP4B|C14orf103	autophagy related 2B	protein-coding
215201	chr7	155803351	155803450	+	0	NA	exon (NM_000193, exon 3 of 3)	exon (NM_000193, exon 3 of 3)	5763	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
133647	chr2	127046351	127047180	+	0	NA	Intergenic	Intergenic	35300	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
203649	chr7	981851	983430	+	0	NA	promoter-TSS (NM_017781)	promoter-TSS (NM_017781)	-541	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
86793	chr16	67815271	67815630	+	0	NA	intron (NM_001288994, intron 2 of 10)	AluJr|SINE|Alu	8561	NM_001351158	55815		NM_018430	ENSG00000102904	TSNAXIP1	TXI1	translin associated factor X interacting protein 1	protein-coding
225254	chr9	34331171	34331330	+	0	NA	intron (NM_001244390, intron 1 of 2)	intron (NM_001244390, intron 1 of 2)	1681	NM_001161	318		NM_001161	ENSG00000164978	NUDT2	APAH1|IDDPN	nudix hydrolase 2	protein-coding
80130	chr16	2063901	2064300	+	0	NA	intron (NM_001370404, intron 14 of 40)	CpG	15898	NM_001318832	7249		NM_000548	ENSG00000103197	TSC2	LAM|PPP1R160|TSC4	TSC complex subunit 2	protein-coding
7563	chr1	35155301	35155780	+	0	NA	Intergenic	MIR|SINE|MIR	37605	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
138768	chr2	216003251	216003550	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	10151	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
222571	chr8	140625001	140625930	+	0	NA	intron (NM_012154, intron 1 of 18)	(GCCCCT)n|Simple_repeat|Simple_repeat	10168	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
8919	chr1	43989771	43989930	+	0	NA	intron (NM_003780, intron 6 of 6)	MER49|LTR|ERV1	-1746	NM_001349127	149473		NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding
208572	chr7	72834051	72834380	+	0	NA	TTS (NR_001588)	TTS (NR_001588)	4842	NR_024110	155370		NR_001588	ENSG00000291152	SBDSP1	SBDSP	SBDS pseudogene 1	pseudo
84382	chr16	30288901	30289300	+	0	NA	intron (NR_002453, intron 10 of 12)	intron (NR_002453, intron 10 of 12)	-40687	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
38492	chr11	45870271	45870980	+	0	NA	intron (NM_021117, intron 9 of 11)	intron (NM_021117, intron 9 of 11)	-15026	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
126312	chr2	27301501	27302000	+	0	NA	intron (NM_032546, intron 4 of 9)	MER41A|LTR|ERV1	6695	NM_003353	7349		NM_003353	ENSG00000163794	UCN	UCN1|UI|UROC	urocortin	protein-coding
18124	chr1	160732021	160732280	+	0	NA	Intergenic	L1PA7|LINE|L1	-6907	NM_001282594	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
63644	chr14	20945171	20945430	+	0	NA	Intergenic	L2a|LINE|L2	-10187	NM_002934	6036		NM_002934	ENSG00000169385	RNASE2	EDN|RAF3|RNS2	ribonuclease A family member 2	protein-coding
55930	chr12	109887151	109887450	+	0	NA	Intergenic	AluSc|SINE|Alu	-6759	NM_016433	51228		NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
88179	chr16	81717621	81718080	+	0	NA	Intergenic	L1MA10|LINE|L1	52496	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
49948	chr12	40105151	40106440	+	0	NA	exon (NM_052885, exon 1 of 10)	exon (NM_052885, exon 1 of 10)	286	NM_052885	114134		NM_052885	ENSG00000151229	SLC2A13	HMIT	solute carrier family 2 member 13	protein-coding
84518	chr16	30515471	30515830	+	0	NA	intron (NM_002209, intron 25 of 30)	intron (NM_002209, intron 25 of 30)	10916	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
71478	chr14	105945901	105946130	+	0	NA	Intergenic	Intergenic	26254	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
94335	chr17	28846071	28846680	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3585	NM_001288633	55731		NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding
239317	chrY	17527551	17527650	+	0	NA	Intergenic	L1MA2|LINE|L1	26642	NR_028084	100302526		NR_028084		FAM41AY2	-	family with sequence similarity 41 member A, Y-linked 2	ncRNA
157739	chr22	46606621	46607080	+	0	NA	intron (NM_001366660, intron 1 of 17)	L1MB3|LINE|L1	-13536	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
193599	chr6	30724001	30724450	+	0	NA	exon (NM_001293216, exon 4 of 4).8	exon (NM_001293216, exon 4 of 4).8	2587	NM_001293215	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
109319	chr19	585751	586330	+	0	NA	Intergenic	Intergenic	-3841	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
116185	chr19	17452501	17452880	+	0	NA	Intergenic	Intergenic	-4022	NM_001190844	100130519		NM_001190844	ENSG00000188051	TMEM221	Jiraiya	transmembrane protein 221	protein-coding
51315	chr12	51320071	51320300	+	0	NA	intron (NM_001290007, intron 1 of 12)	AluSx|SINE|Alu	3989	NM_001290009	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
201668	chr6	149504351	149504650	+	0	NA	TTS (NM_139126)	TTS (NM_139126)	-19486	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
208465	chr7	66988821	66989080	+	0	NA	intron (NM_016038, intron 4 of 4)	AluSx3|SINE|Alu	6636	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
30811	chr10	85097051	85097150	+	0	NA	Intergenic	AluY|SINE|Alu	101805	NR_120668	101929624		NR_120667	ENSG00000237267	LINC01519	-	long intergenic non-protein coding RNA 1519	ncRNA
58046	chr12	124465571	124467200	+	0	NA	intron (NM_001077261, intron 6 of 47)	CpG-6187	101227	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
144817	chr20	36772371	36772530	+	0	NA	intron (NM_001145315, intron 1 of 10)	AluSx1|SINE|Alu	1301	NM_001145316	79980		NM_024918	ENSG00000149636	DSN1	C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3	DSN1 component of MIS12 kinetochore complex	protein-coding
34530	chr10	132788771	132789130	+	0	NA	Intergenic	CpG-3593	-2803	NM_177400	84504		NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B|SPAX8	NK6 homeobox 2	protein-coding
215080	chr7	154927521	154929500	+	0	NA	promoter-TSS (NR_024477)	promoter-TSS (NR_024477)	-7	NR_024476	100132707		NR_024476		PAXIP1-AS2	PAXIP1OS	PAXIP1 antisense RNA 2	ncRNA
196471	chr6	43544401	43545000	+	0	NA	intron (NR_144392, intron 21 of 32)	AluSz6|SINE|Alu	27611	NM_203290	9533		NM_004875	ENSG00000171453	POLR1C	AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3	RNA polymerase I and III subunit C	protein-coding
105581	chr18	160071	160980	+	0	NA	intron (NM_005151, intron 1 of 15)	FRAM|SINE|Alu	1968	NM_005151	9097		NM_005151	ENSG00000101557	USP14	TGT|Ubp6	ubiquitin specific peptidase 14	protein-coding
125057	chr2	9619371	9619530	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	11547	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
174075	chr4	26992521	26993430	+	0	NA	intron (NM_020860, intron 3 of 11)	intron (NM_020860, intron 3 of 11)	132134	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
30118	chr10	74005351	74005750	+	0	NA	intron (NM_014000, intron 1 of 21)	AluSx|SINE|Alu	7434	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
236363	chrX	70664751	70664930	+	0	NA	intron (NM_031276, intron 16 of 29)	intron (NM_031276, intron 16 of 29)	181455	NR_145758	109617015		NR_145758	ENSG00000280704	SNORD3E	-	small nucleolar RNA, C/D box 3E	snoRNA
175473	chr4	73068301	73068690	+	0	NA	intron (NM_001297733, intron 1 of 5)	intron (NM_001297733, intron 1 of 5)	1221	NM_173827	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
49771	chr12	31806551	31807930	+	0	NA	Intergenic	LTR7|LTR|ERV1	-14942	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
160126	chr3	20039521	20041000	+	0	NA	promoter-TSS (NM_003884)	promoter-TSS (NM_003884)	-186	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
41353	chr11	65963621	65963880	+	0	NA	intron (NM_005146, intron 1 of 19)	AluSg4|SINE|Alu	2016	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
43805	chr11	86500671	86500830	+	0	NA	intron (NR_147828, intron 5 of 14)	L2|LINE|L2	125863	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
43491	chr11	78415751	78415850	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	2020	NM_080491	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
140319	chr2	232507151	232507450	+	0	NA	Intergenic	Intergenic	-13088	NM_001195129	646960		NM_001195129	ENSG00000237412	PRSS56	MCOP6	serine protease 56	protein-coding
68934	chr14	91382851	91383400	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	34695	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
22943	chr1	225987371	225988250	+	0	NA	intron (NM_152608, intron 6 of 6)	intron (NM_152608, intron 6 of 6)	11533	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
134295	chr2	135948451	135949650	+	0	NA	intron (NM_001293312, intron 3 of 14)	intron (NM_001293312, intron 3 of 14)	-36126	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
115337	chr19	15153971	15154200	+	0	NA	Intergenic	LTR16C|LTR|ERVL	25265	NR_106853	102465476		NR_106853	ENSG00000275711	MIR6795	hsa-mir-6795	microRNA 6795	ncRNA
155547	chr22	38716301	38716800	+	0	NA	intron (NM_004286, intron 3 of 11)	intron (NM_004286, intron 3 of 11)	10606	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
181553	chr5	43125321	43125680	+	0	NA	intron (NM_001330710, intron 3 of 5)	AluSq2|SINE|Alu	3935	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
21873	chr1	207730421	207731080	+	0	NA	Intergenic	L1PA2|LINE|L1	-21288	NM_002389	4179		NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding
176064	chr4	82438421	82438680	+	0	NA	intron (NM_021204, intron 1 of 5)	AluJr|SINE|Alu	7960	NM_001292017	58478		NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145|mtnC	enolase-phosphatase 1	protein-coding
213460	chr7	138898151	138898650	+	0	NA	intron (NM_001164665, intron 9 of 19)	intron (NM_001164665, intron 9 of 19)	82989	NM_001164665	57670		NM_020910	ENSG00000122778	KIAA1549	RP86	KIAA1549	protein-coding
180656	chr5	17526521	17526800	+	0	NA	Intergenic	Intergenic	-34584	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
209853	chr7	90298201	90298430	+	0	NA	intron (NM_001160138, intron 16 of 22)	intron (NM_001160138, intron 16 of 22)	22668	NM_001384237	107986818		NM_001384237	ENSG00000283267	FAM237B	-	family with sequence similarity 237 member B	protein-coding
70999	chr14	104727951	104728530	+	0	NA	intron (NM_152328, intron 1 of 12)	intron (NM_152328, intron 1 of 12)	-1604	NM_199165	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
208776	chr7	73565071	73565230	+	0	NA	Intergenic	AluJb|SINE|Alu	-7460	NM_001197244	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
45334	chr11	118220821	118221080	+	0	NA	intron (NM_001098526, intron 1 of 9)	MER83B-int|LTR|ERV1	4061	NM_001098526	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
173627	chr4	13386471	13386630	+	0	NA	intron (NM_001017979, intron 4 of 6)	L1PA13|LINE|L1	97790	NM_001017979	9364		NM_004249	ENSG00000157869	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
123143	chr19	52137851	52138200	+	0	NA	intron (NM_178523, intron 1 of 3)	AluYj4|SINE|Alu	1913	NR_135823	90317		NM_178523	ENSG00000204611	ZNF616	-	zinc finger protein 616	protein-coding
54985	chr12	96335301	96336030	+	0	NA	intron (NM_002595, intron 1 of 16)	MER104|DNA|TcMar-Tc2	64774	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
59639	chr13	28141001	28141200	+	0	NA	intron (NM_175854, intron 1 of 18)	AluSx|SINE|Alu	-1926	NR_029383	100288730		NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
150427	chr21	42414051	42414150	+	0	NA	intron (NM_018961, intron 5 of 14)	intron (NM_018961, intron 5 of 14)	10198	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
86438	chr16	66909601	66910580	+	0	NA	exon (NM_004062, exon 16 of 18)	exon (NM_004062, exon 16 of 18)	8795	NM_001204744	1014		NM_004062	ENSG00000166589	CDH16	-	cadherin 16	protein-coding
156258	chr22	40409171	40409800	+	0	NA	TTS (NM_001282662)	TTS (NM_001282662)	38891	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
213791	chr7	140886071	140886430	+	0	NA	intron (NM_001374244, intron 1 of 18)	L2b|LINE|L2	38018	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
65750	chr14	53296051	53296230	+	0	NA	Intergenic	Intergenic	142786	NR_110062	101927620		NR_110062	ENSG00000258731	DDHD1-DT	-	DDHD1 divergent transcript	ncRNA
180906	chr5	34191201	34191630	+	0	NA	non-coding (NR_157803, exon 1 of 1)	non-coding (NR_157803, exon 1 of 1)	1834	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
95380	chr17	35887371	35887530	+	0	NA	Intergenic	AluJb|SINE|Alu	-7090	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
67642	chr14	73064721	73065930	+	0	NA	intron (NM_021239, intron 1 of 18)	AluSx1|SINE|Alu	6791	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
193320	chr6	30136851	30137280	+	0	NA	exon (NM_001286633, exon 2 of 6).6	exon (NM_001286633, exon 2 of 6).6	332	NM_138700	135644		NM_138700	ENSG00000204614	TRIM40	RNF35	tripartite motif containing 40	protein-coding
57021	chr12	120646651	120647600	+	0	NA	intron (NM_001033677, intron 1 of 5)	intron (NM_001033677, intron 1 of 5)	-3152	NM_004276	9478		NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
14797	chr1	146144551	146145230	+	0	NA	promoter-TSS (NM_001039703)	promoter-TSS (NM_001039703)	-86	NM_001039703	100132406		NM_001039703	ENSG00000271425	NBPF10	AB6|AG1|NBPF9	NBPF member 10	protein-coding
147878	chr20	62831901	62833200	+	0	NA	intron (NM_001853, intron 25 of 31)	intron (NM_001853, intron 25 of 31)	-12016	NM_080750	100132911		NM_080750		DPH3P1	C20orf143|DPH3B|ZCSL1	diphthamide biosynthesis 3 pseudogene 1	pseudo
36410	chr11	4089001	4089200	+	0	NA	intron (NM_001277962, intron 12 of 12)	AluJb|SINE|Alu	-5585	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
131676	chr2	97709751	97711750	+	0	NA	Intergenic	Intergenic	-2826	NM_001079	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
48673	chr12	10554021	10555520	+	0	NA	intron (NR_146456, intron 1 of 2)	intron (NR_146456, intron 1 of 2)	1391	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
200020	chr6	129621351	129621900	+	0	NA	intron (NM_033515, intron 5 of 14)	MIR|SINE|MIR	88552	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
110521	chr19	2072801	2073400	+	0	NA	3' UTR (NM_130807, exon 5 of 5)	3' UTR (NM_130807, exon 5 of 5)	-21856	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
87461	chr16	71461551	71462600	+	0	NA	5' UTR (NM_001381968, exon 1 of 7)	5' UTR (NM_001381968, exon 1 of 7)	172	NM_001381984	7571		NM_145911	ENSG00000167377	ZNF23	KOX16|ZNF359|ZNF612|Zfp612	zinc finger protein 23	protein-coding
35585	chr11	1727271	1727430	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	23245	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
28140	chr10	43440851	43441250	+	0	NA	intron (NM_001355444, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	3939	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
231170	chr9	129893451	129894670	+	0	NA	intron (NM_015033, intron 16 of 16)	intron (NM_015033, intron 16 of 16)	24455	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
237558	chrX	120680401	120680600	+	0	NA	Intergenic	L1MA9|LINE|L1	-50350	NM_152692	29071		NM_152692	ENSG00000171155	C1GALT1C1	AHUS8|C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS	C1GALT1 specific chaperone 1	protein-coding
74099	chr15	52794621	52795030	+	0	NA	Intergenic	Intergenic	-4489	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
72385	chr15	31374721	31375130	+	0	NA	3' UTR (NM_015995, exon 2 of 2)	3' UTR (NM_015995, exon 2 of 2)	48090	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
223993	chr9	2087571	2088030	+	0	NA	intron (NM_003070, intron 18 of 33)	intron (NM_003070, intron 18 of 33)	65855	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
220688	chr8	101301321	101302050	+	0	NA	Intergenic	Intergenic	-67208	NR_002182	83955		NM_032031	ENSG00000228224	NACA4P	FKSG17|NACAP1	NACA family member 4, pseudogene	pseudo
182528	chr5	65565601	65566300	+	0	NA	intron (NM_001278926, intron 2 of 11)	Tigger8|DNA|TcMar-Tigger	2654	NM_015342	23398		NM_015342	ENSG00000113593	PPWD1	-	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding
76220	chr15	73925371	73925530	+	0	NA	non-coding (NR_040067, exon 2 of 4)	non-coding (NR_040067, exon 2 of 4)	-1012	NM_005576	4016		NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase like 1	protein-coding
130573	chr2	85769671	85769850	+	0	NA	intron (NM_032827, intron 2 of 2)	intron (NM_032827, intron 2 of 2)	13917	NR_106719	102466516		NR_106719	ENSG00000278783	MIR6071	hsa-mir-6071	microRNA 6071	ncRNA
192008	chr6	16333371	16333530	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	94863	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
87800	chr16	75494951	75495680	+	0	NA	non-coding (NR_163480, exon 1 of 4)	non-coding (NR_163480, exon 1 of 4)	126	NR_163481	4166		NM_021615	ENSG00000183196	CHST6	C-GlcNAc6ST|GST4-beta|MCDC1|glcNAc6ST-5|gn6st-5|hCGn6ST	carbohydrate sulfotransferase 6	protein-coding
50085	chr12	44835471	44836230	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	39811	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
115441	chr19	15322571	15322930	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluY|SINE|Alu	9789	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
184348	chr5	96971251	96971550	+	0	NA	intron (NM_175920, intron 1 of 17)	L1MEf|LINE|L1	12967	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
81912	chr16	11737171	11737550	+	0	NA	intron (NR_136674, intron 1 of 8)	AluSq2|SINE|Alu	5497	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
179089	chr4	168451401	168451800	+	0	NA	intron (NM_001291510, intron 8 of 29)	L2c|LINE|L2	28892	NM_001345927	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
163942	chr3	52781771	52781930	+	0	NA	intron (NM_002215, intron 6 of 21)	(CA)n|Simple_repeat|Simple_repeat	1924	NM_001166436	3697		NM_002215	ENSG00000055957	ITIH1	H1P|IATIH|IGHEP1|ITI-HC1|ITIH|SHAP	inter-alpha-trypsin inhibitor heavy chain 1	protein-coding
58754	chr12	132620321	132620580	+	0	NA	exon (NM_001282164, exon 6 of 11)	exon (NM_001282164, exon 6 of 11)	1674	NM_170682	22953		NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	purinergic receptor P2X 2	protein-coding
220415	chr8	100276371	100277150	+	0	NA	intron (NM_183419, intron 2 of 9)	L1MD2|LINE|L1	25433	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
384	chr1	1042901	1044400	+	0	NA	exon (NM_001364727, exon 8 of 36)	exon (NM_001364727, exon 8 of 36)	9657	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
142426	chr20	3903571	3903730	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluSx3|SINE|Alu	13834	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
32016	chr10	101001521	101002180	+	0	NA	promoter-TSS (NM_001318101)	promoter-TSS (NM_001318101)	-647	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
130240	chr2	84836321	84836580	+	0	NA	3' UTR (NM_001307978, exon 5 of 5)	3' UTR (NM_001307978, exon 5 of 5)	44634	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
163024	chr3	49804771	49805750	+	0	NA	TTS (NR_049825)	TTS (NR_049825)	985	NR_049825	100847079		NR_049825	ENSG00000283726	MIR5193	mir-5193	microRNA 5193	ncRNA
75467	chr15	65881901	65882500	+	0	NA	intron (NM_004663, intron 4 of 4)	intron (NM_004663, intron 4 of 4)	12709	NM_001206836	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
172893	chr4	3463001	3463600	+	0	NA	promoter-TSS (NM_001363811)	promoter-TSS (NM_001363811)	-6	NM_173660	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
55615	chr12	106958001	106958230	+	0	NA	intron (NM_001319662, intron 1 of 2)	intron (NM_001319662, intron 1 of 2)	1330	NM_001319662	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
295	chr1	956901	957100	+	0	NA	exon (NM_015658, exon 4 of 19)	exon (NM_015658, exon 4 of 19)	2256	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
166667	chr3	120082271	120082430	+	0	NA	intron (NM_001146156, intron 1 of 10)	MER33|DNA|hAT-Charlie	2298	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
169714	chr3	172133201	172133530	+	0	NA	intron (NM_022763, intron 2 of 25)	intron (NM_022763, intron 2 of 25)	92834	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
143633	chr20	31833321	31834130	+	0	NA	exon (NM_033118, exon 13 of 13)	exon (NM_033118, exon 13 of 13)	11879	NM_004118	2307		NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
55774	chr12	108575551	108576050	+	0	NA	Intergenic	AluSg7|SINE|Alu	13204	NM_213595	23479		NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
151904	chr22	18936021	18936370	+	0	NA	promoter-TSS (NM_001368250)	promoter-TSS (NM_001368250)	98	NM_001368250	5625		NM_016335	ENSG00000100033	PRODH	HSPOX2|PIG6|POX|PRODH1|PRODH2|TP53I6	proline dehydrogenase 1	protein-coding
225817	chr9	37752551	37752930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1063	NM_001286952	158234		NM_144964	ENSG00000165275	TRMT10B	RG9MTD3|bA3J10.9	tRNA methyltransferase 10B	protein-coding
6415	chr1	28058151	28058450	+	0	NA	intron (NR_104214, intron 1 of 16)	intron (NR_104214, intron 1 of 16)	30310	NM_001282560	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
93472	chr17	18816821	18817230	+	0	NA	Intergenic	Intergenic	-18639	NR_164151	101929141		NR_164151	ENSG00000250111	LOC101929141	-	coiled-coil domain-containing protein 144A-like	pseudo
179383	chr4	183600201	183600400	+	0	NA	Intergenic	L1M4|LINE|L1	58885	NM_152682	201965		NM_152682	ENSG00000182552	RWDD4	FAM28A|RWDD4A	RWD domain containing 4	protein-coding
45653	chr11	119011301	119011500	+	0	NA	intron (NR_104050, intron 5 of 10).2	AluSx|SINE|Alu	6943	NM_001028	6230		NM_001028	ENSG00000118181	RPS25	S25|eS25	ribosomal protein S25	protein-coding
152728	chr22	21668171	21668330	+	0	NA	intron (NM_148175, intron 1 of 20)	MER49|LTR|ERV1	2238	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
66346	chr14	61448271	61448430	+	0	NA	intron (NM_006255, intron 4 of 13)	intron (NM_006255, intron 4 of 13)	121844	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
204275	chr7	2644121	2644400	+	0	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	12274	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
191742	chr6	13763721	13764050	+	0	NA	Intergenic	Intergenic	50675	NM_001031713	63933		NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
151654	chr22	16970571	16970730	+	0	NA	intron (NM_001037814, intron 3 of 9)	intron (NM_001037814, intron 3 of 9)	37572	NM_001037814	128954		NM_001037814	ENSG00000215568	GAB4	-	GRB2 associated binding protein family member 4	protein-coding
88867	chr16	87692271	87692430	+	0	NA	intron (NM_020655, intron 4 of 4)	intron (NM_020655, intron 4 of 4)	73636	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
15248	chr1	149617121	149617650	+	0	NA	intron (NR_111950, intron 1 of 8)	intron (NR_111950, intron 1 of 8)	10373	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
99792	chr17	51238071	51238800	+	0	NA	intron (NM_017643, intron 2 of 16)	HAL1|LINE|L1	21614	NM_017643	54799		NM_017643	ENSG00000011258	MBTD1	SA49P01	mbt domain containing 1	protein-coding
222419	chr8	134618351	134618450	+	0	NA	intron (NM_020863, intron 3 of 15)	intron (NM_020863, intron 3 of 15)	20329	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
68770	chr14	91108001	91108630	+	0	NA	intron (NM_001358312, intron 1 of 13)	MER96B|DNA|hAT-Tip100	-5698	NM_001102366	80017		NM_024952	ENSG00000133943	DGLUCY	C14orf159	D-glutamate cyclase	protein-coding
92497	chr17	8880951	8881200	+	0	NA	intron (NM_001142633, intron 17 of 18)	intron (NM_001142633, intron 17 of 18)	-13398	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
155825	chr22	39353171	39354180	+	0	NA	intron (NM_145731, intron 1 of 3)	intron (NM_145731, intron 1 of 3)	3684	NM_004711	9145		NM_004711	ENSG00000100321	SYNGR1	-	synaptogyrin 1	protein-coding
9291	chr1	46424671	46425250	+	0	NA	Intergenic	Intergenic	-8867	NR_045483	729041		NR_045483		FAAHP1	FAAH-OUT|FAAHOUT|LINC00505	fatty acid amide hydrolase pseudogene 1	pseudo
169613	chr3	171255301	171256080	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-148931	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
143734	chr20	32334191	32335030	+	0	NA	3' UTR (NM_004798, exon 9 of 9)	3' UTR (NM_004798, exon 9 of 9)	-23721	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
7133	chr1	32199751	32200900	+	0	NA	promoter-TSS (NM_024296)	promoter-TSS (NM_024296)	-270	NM_001301011	79140		NM_024296	ENSG00000160050	CCDC28B	-	coiled-coil domain containing 28B	protein-coding
80844	chr16	3497321	3497580	+	0	NA	promoter-TSS (NM_001353382)	promoter-TSS (NM_001353382)	-798	NM_001353382	646174		NM_001080524	ENSG00000215131	C16orf90	-	chromosome 16 open reading frame 90	protein-coding
167484	chr3	129162951	129163430	+	0	NA	Intergenic	Intergenic	-1960	NM_001204890	100534599		NM_001204890	ENSG00000261796	ISY1-RAB43	ISY1	ISY1-RAB43 readthrough	protein-coding
144254	chr20	34529001	34529400	+	0	NA	intron (NR_168139, intron 3 of 4)	intron (NR_168139, intron 3 of 4)	12778	NM_001382367	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
123392	chr19	53922071	53922450	+	0	NA	intron (NM_001384801, intron 4 of 4)	intron (NM_001384801, intron 4 of 4)	12982	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
138592	chr2	208040171	208040330	+	0	NA	Intergenic	Intergenic	-14723	NM_001080475	389072		NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
82751	chr16	21415871	21416230	+	0	NA	intron (NM_130464, intron 2 of 12)	MER30|DNA|hAT-Charlie	9328	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
60568	chr13	41540001	41540530	+	0	NA	Intergenic	L1PA4|LINE|L1	28130	NR_049803	100847026		NR_049803	ENSG00000284584	MIR5006	-	microRNA 5006	ncRNA
185747	chr5	132114101	132114900	+	0	NA	Intergenic	Intergenic	40711	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
112376	chr19	6048071	6048230	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	62350	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
151753	chr22	17831901	17832100	+	0	NA	exon (NM_015241, exon 21 of 32)	exon (NM_015241, exon 21 of 32)	54710	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
74127	chr15	55221101	55221900	+	0	NA	intron (NM_183236, intron 6 of 6)	intron (NM_183236, intron 6 of 6)	-24559	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
60739	chr13	44434701	44435830	+	0	NA	intron (NM_183422, intron 2 of 2)	CpG	1593	NM_006022	8848		NM_006022	ENSG00000102804	TSC22D1	HUCEP-2|Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
79836	chr16	1442151	1442750	+	0	NA	exon (NM_001143980, exon 6 of 17)	exon (NM_001143980, exon 6 of 17)	2039	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
61973	chr13	79458171	79458730	+	0	NA	Intergenic	MER53|DNA|hAT	-22674	NM_001161407	54602		NM_019080	ENSG00000102471	NDFIP2	N4WBP5A	Nedd4 family interacting protein 2	protein-coding
23476	chr1	228623551	228624250	+	0	NA	promoter-TSS (NR_023363).7	promoter-TSS (NR_023363).7	-115	NR_023366	100169755		NR_023366	ENSG00000200381	RNA5S4	RN5S4	RNA, 5S ribosomal 4	rRNA
170118	chr3	183188921	183189250	+	0	NA	intron (NM_015078, intron 27 of 29)	ERVL-E-int|LTR|ERVL	-26351	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
104451	chr17	81098801	81099000	+	0	NA	intron (NM_001385159, intron 1 of 8)	intron (NM_001385159, intron 1 of 8)	1289	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
49537	chr12	26126571	26126800	+	0	NA	Intergenic	CpG	-1648	NM_030762	79365		NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|FNSS1|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding
29796	chr10	72289421	72290200	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	15886	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
196519	chr6	43768851	43770460	+	0	NA	promoter-TSS (NM_001171623)	promoter-TSS (NM_001171623)	-554	NM_001171628	7422		NM_003376	ENSG00000112715	VEGFA	L-VEGF|MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
99981	chr17	57612601	57613330	+	0	NA	intron (NM_170721, intron 7 of 9)	intron (NM_170721, intron 7 of 9)	-4553	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
216832	chr8	22586771	22586930	+	0	NA	intron (NM_198042, intron 5 of 7)	MER5A|DNA|hAT-Charlie	6375	NM_001368120	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
193577	chr6	30676301	30676500	+	0	NA	TTS (NM_001134870).7	TTS (NM_001134870).7	-3347	NM_001164239	8449		NM_003587	ENSG00000204560	DHX16	DBP2|DDX16|NMOAS|PRO2014|PRP8|PRPF2|Prp2	DEAH-box helicase 16	protein-coding
153185	chr22	23841601	23842100	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-2844	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
10233	chr1	63322021	63322700	+	0	NA	promoter-TSS (NM_012183)	promoter-TSS (NM_012183)	98	NR_121634	100996301		NR_121634	ENSG00000230798	FOXD3-AS1	FAST|pasFOXD3	FOXD3 antisense RNA 1	ncRNA
229660	chr9	124346071	124346230	+	0	NA	intron (NM_001166169, intron 8 of 9)	intron (NM_001166169, intron 8 of 9)	-7323	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
230457	chr9	128193851	128194450	+	0	NA	intron (NM_001131015, intron 1 of 17)	AluSq2|SINE|Alu	-2046	NM_001257975	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
100459	chr17	61404921	61405600	+	0	NA	exon (NM_005994, exon 6 of 7)	exon (NM_005994, exon 6 of 7)	5417	NM_005994	6909		NM_005994	ENSG00000121068	TBX2	VETD	T-box transcription factor 2	protein-coding
27532	chr10	32317401	32319130	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	28893	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
82271	chr16	15153351	15153450	+	0	NA	Intergenic	Intergenic	1602	NR_037466	100500852		NR_037466	ENSG00000264115	MIR3180-4	mir-3180-4	microRNA 3180-4	ncRNA
236228	chrX	65714301	65714580	+	0	NA	intron (NM_002444, intron 1 of 12)	L1PA13|LINE|L1	46786	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
129166	chr2	68089521	68090380	+	0	NA	Intergenic	Intergenic	-26946	NM_001190265	10438		NM_006333	ENSG00000197223	C1D	LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
206582	chr7	35693251	35693980	+	0	NA	intron (NM_022373, intron 2 of 8)	intron (NM_022373, intron 2 of 8)	1520	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
57391	chr12	121818501	121819150	+	0	NA	intron (NM_001353345, intron 10 of 16)	AluY|SINE|Alu	14816	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
191597	chr6	12049471	12049630	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	37238	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
214544	chr7	150523551	150523650	+	0	NA	Intergenic	MER11C|LTR|ERVK	8728	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
192464	chr6	24922121	24922430	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-11227	NM_014722	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
68250	chr14	77000371	77000930	+	0	NA	Intergenic	Intergenic	28058	NM_024496	64207		NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1|NEDAMSS	interferon regulatory factor 2 binding protein like	protein-coding
74329	chr15	58476401	58476800	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	22135	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
220293	chr8	98043801	98044400	+	0	NA	intron (NM_000989, intron 3 of 4)	AluSq2|SINE|Alu	1445	NM_000989	6156		NM_000989	ENSG00000156482	RPL30	L30|eL30	ribosomal protein L30	protein-coding
139051	chr2	218708371	218708930	+	0	NA	Intergenic	MER72B|LTR|ERV1	-2185	NM_014640	9654		NM_014640	ENSG00000135912	TTLL4	-	tubulin tyrosine ligase like 4	protein-coding
229589	chr9	123374951	123375330	+	0	NA	intron (NM_173689, intron 11 of 12)	intron (NM_173689, intron 11 of 12)	6361	NR_104603	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
69202	chr14	92676401	92676650	+	0	NA	exon (NM_001319987, exon 7 of 9)	exon (NM_001319987, exon 7 of 9)	72102	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
11959	chr1	93990671	93991230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-81352	NM_001308253	2730		NM_002061	ENSG00000023909	GCLM	GLCLR	glutamate-cysteine ligase modifier subunit	protein-coding
118175	chr19	35039671	35039830	+	0	NA	promoter-TSS (NM_002151)	promoter-TSS (NM_002151)	-756	NM_182983	3249		NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
15951	chr1	151835771	151835930	+	0	NA	Intergenic	Intergenic	-2427	NR_024237	100132111		NR_024237		C2CD4D-AS1	-	C2CD4D and THEM5 antisense RNA 1	ncRNA
121372	chr19	46857651	46857750	+	0	NA	Intergenic	Intergenic	-3297	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
83567	chr16	28126221	28126480	+	0	NA	intron (NM_001270940, intron 13 of 24)	intron (NM_001270940, intron 13 of 24)	-62636	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
26298	chr10	14967001	14967400	+	0	NA	intron (NM_001080836, intron 2 of 2)	intron (NM_001080836, intron 2 of 2)	7812	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
166305	chr3	112643911	112644930	+	0	NA	Intergenic	MER41E|LTR|ERV1	-3277	NM_199511	151887		NM_178274	ENSG00000091986	CCDC80	CL2|DRO1|LINC01279|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
160242	chr3	23974101	23974300	+	0	NA	intron (NR_110524, intron 8 of 8)	Tigger3b|DNA|TcMar-Tigger	-27638	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
212324	chr7	127380621	127380880	+	0	NA	intron (NM_176814, intron 3 of 5)	intron (NM_176814, intron 3 of 5)	11958	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
131649	chr2	97644201	97644400	+	0	NA	Intergenic	Intergenic	-1762	NM_001862	1329		NM_001862	ENSG00000135940	COX5B	COXVB	cytochrome c oxidase subunit 5B	protein-coding
201647	chr6	149476651	149476950	+	0	NA	intron (NM_207360, intron 1 of 5)	AluJo|SINE|Alu	8214	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
77659	chr15	85541801	85542200	+	0	NA	intron (NM_007200, intron 4 of 36)	intron (NM_007200, intron 4 of 36)	-77950	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
90341	chr17	1185251	1185550	+	0	NA	intron (NM_001322841, intron 1 of 22)	AluSx1|SINE|Alu	1872	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
112043	chr19	5133901	5134600	+	0	NA	intron (NM_015015, intron 14 of 22)	intron (NM_015015, intron 14 of 22)	165137	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
198481	chr6	106246351	106246850	+	0	NA	intron (NR_104402, intron 4 of 5)	intron (NR_104402, intron 4 of 5)	69666	NR_104402	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
149459	chr21	31666921	31667400	+	0	NA	intron (NM_000454, intron 3 of 4)	intron (NM_000454, intron 3 of 4)	7467	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
38990	chr11	47593951	47594550	+	0	NA	5' UTR (NM_031909, exon 1 of 2)	5' UTR (NM_031909, exon 1 of 2)	161	NM_031909	114900		NM_031909	ENSG00000172247	C1QTNF4	CTRP4|ZACRP4	C1q and TNF related 4	protein-coding
97536	chr17	44042521	44042900	+	0	NA	intron (NM_001369486, intron 1 of 3)	AluY|SINE|Alu	-19559	NM_001304813	84336		NM_032376	ENSG00000091947	TMEM101	-	transmembrane protein 101	protein-coding
93734	chr17	19725801	19726000	+	0	NA	Intergenic	L1MB2|LINE|L1	-6921	NR_135624	146802		NM_152908	ENSG00000180638	SLC47A2	MATE2|MATE2-B|MATE2-K|MATE2K	solute carrier family 47 member 2	protein-coding
30242	chr10	75022251	75022580	+	0	NA	TTS (NR_145812)	TTS (NR_145812)	682	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
225311	chr9	34588571	34588930	+	0	NA	intron (NM_001207011, intron 1 of 9)	GA-rich|Low_complexity|Low_complexity	974	NM_147164	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
55254	chr12	102061221	102062880	+	0	NA	promoter-TSS (NM_016053)	promoter-TSS (NM_016053)	-59	NM_016053	51019		NM_016053	ENSG00000120860	WASHC3	CCDC53|CGI-116	WASH complex subunit 3	protein-coding
110870	chr19	2625601	2626150	+	0	NA	intron (NM_052847, intron 2 of 4)	AluSx1|SINE|Alu	-4840	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
185592	chr5	131404171	131404530	+	0	NA	Intergenic	L1MB2|LINE|L1	140297	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
62884	chr13	110683151	110683480	+	0	NA	intron (NR_147942, intron 5 of 16)	AluJr|SINE|Alu	22801	NR_147942	79587		NM_024537	ENSG00000134905	CARS2	COXPD27|cysRS	cysteinyl-tRNA synthetase 2, mitochondrial	protein-coding
116202	chr19	17486651	17486750	+	0	NA	exon (NM_198580, exon 2 of 12)	exon (NM_198580, exon 2 of 12)	16176	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
110345	chr19	1880621	1880880	+	0	NA	intron (NM_001130111, intron 2 of 4)	intron (NM_001130111, intron 2 of 4)	4746	NM_001130111	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
226564	chr9	72387271	72387500	+	0	NA	Intergenic	Intergenic	-22177	NM_001102420	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
96043	chr17	39452371	39452530	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1187	NM_004774	5469		NM_004774	ENSG00000125686	MED1	CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2	mediator complex subunit 1	protein-coding
147907	chr20	62896601	62897250	+	0	NA	exon (NM_033081, exon 7 of 16)	exon (NM_033081, exon 7 of 16)	-14022	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
25009	chr10	3239521	3240030	+	0	NA	Intergenic	Intergenic	-9239	NR_164118	105376353		NR_164118		LOC105376353	-	mucin-5AC-like	ncRNA
21001	chr1	202805871	202806350	+	0	NA	intron (NM_006618, intron 1 of 26)	intron (NM_006618, intron 1 of 26)	2311	NM_006618	10765		NM_006618	ENSG00000117139	KDM5B	CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1	lysine demethylase 5B	protein-coding
43780	chr11	86259921	86260180	+	0	NA	intron (NM_001330334, intron 6 of 9)	intron (NM_001330334, intron 6 of 9)	15297	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
168590	chr3	149089421	149089880	+	0	NA	intron (NR_046648, intron 1 of 2)	intron (NR_046648, intron 1 of 2)	-3096	NM_001318934	6596		NM_003071	ENSG00000071794	HLTF	HIP116|HIP116A|HLTF1|RNF80|SMARCA3|SNF2L3|ZBU1	helicase like transcription factor	protein-coding
6360	chr1	27832271	27832650	+	0	NA	intron (NM_002713, intron 1 of 5)	intron (NM_002713, intron 1 of 5)	1678	NM_138558	5511		NM_002713	ENSG00000117751	PPP1R8	ARD-1|ARD1|NIPP-1|NIPP1|PRO2047	protein phosphatase 1 regulatory subunit 8	protein-coding
38965	chr11	47545801	47546280	+	0	NA	intron (NM_001376458, intron 1 of 13)	AluY|SINE|Alu	7092	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
31793	chr10	98331951	98332060	+	0	NA	Intergenic	Intergenic	63302	NR_031619	100302133		NR_031619	ENSG00000284415	MIR1287	MIRN1287|hsa-mir-1287|mir-1287	microRNA 1287	ncRNA
191411	chr6	9085301	9085500	+	0	NA	Intergenic	Intergenic	433191	NR_004855	728655		NR_004855		HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
208749	chr7	73524671	73525000	+	0	NA	Intergenic	Intergenic	-2542	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
52929	chr12	57276971	57277330	+	0	NA	intron (NM_001351206, intron 14 of 24)	intron (NM_001351206, intron 14 of 24)	-25963	NM_001286257	246329		NM_145064	ENSG00000185482	STAC3	CMYP13|MYPBB|NAM	SH3 and cysteine rich domain 3	protein-coding
157528	chr22	45415301	45415830	+	0	NA	intron (NM_015653, intron 2 of 6)	L1ME3Cz|LINE|L1	1872	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
138747	chr2	214830851	214831030	+	0	NA	intron (NR_110292, intron 1 of 3)	L2c|LINE|L2	-16007	NR_145773	109617008		NR_145773	ENSG00000207274	SNORA70I	-	small nucleolar RNA, H/ACA box 70I	snoRNA
133668	chr2	127070501	127071150	+	0	NA	intron (NM_139345, intron 2 of 15)	(CAAGGA)n|Simple_repeat|Simple_repeat	11240	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
176408	chr4	89108201	89108800	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-2669	NM_001382380	166815		NM_145715	ENSG00000180346	TIGD2	HEL106	tigger transposable element derived 2	protein-coding
64594	chr14	27797251	27797350	+	0	NA	Intergenic	AluYa5|SINE|Alu	-124079	NR_148991	728755		NR_148991	ENSG00000292998	MIR3171HG	-	MIR3171 host gene	ncRNA
42574	chr11	71997771	71998100	+	0	NA	promoter-TSS (NM_001039660)	promoter-TSS (NM_001039660)	-974	NM_001039660	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
55432	chr12	104518201	104518400	+	0	NA	intron (NM_018413, intron 1 of 2)	AluJo|SINE|Alu	61352	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
183206	chr5	76146001	76146200	+	0	NA	intron (NM_014979, intron 2 of 12)	intron (NM_014979, intron 2 of 12)	62717	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
147657	chr20	62235201	62235500	+	0	NA	non-coding (NR_160555, exon 3 of 4)	non-coding (NR_160555, exon 3 of 4)	-3171	NM_001363878	9885		NM_014835	ENSG00000130703	OSBPL2	DFNA67|DNFA67|ORP-2|ORP2	oxysterol binding protein like 2	protein-coding
187728	chr5	143426671	143427550	+	0	NA	intron (NM_001018075, intron 1 of 8)	intron (NM_001018075, intron 1 of 8)	7699	NM_001364183	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
10315	chr1	64882471	64883230	+	0	NA	intron (NM_001321857, intron 3 of 24)	intron (NM_001321857, intron 3 of 24)	83699	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
36858	chr11	10409301	10409500	+	0	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	-40921	NM_001172431	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
205554	chr7	20329621	20329880	+	0	NA	non-coding (NR_110119, exon 2 of 4)	non-coding (NR_110119, exon 2 of 4)	-1150	NM_002214	3696		NM_002214	ENSG00000105855	ITGB8	-	integrin subunit beta 8	protein-coding
125000	chr2	9476821	9477380	+	0	NA	intron (NM_001320863, intron 2 of 5)	intron (NM_001320863, intron 2 of 5)	2045	NM_001320858	285148		NM_001039613	ENSG00000134330	IAH1	-	isoamyl acetate hydrolyzing esterase 1 (putative)	protein-coding
18748	chr1	167487601	167488130	+	0	NA	intron (NM_198053, intron 1 of 7)	AluJr4|SINE|Alu	30664	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
39876	chr11	62482901	62483300	+	0	NA	intron (NM_024060, intron 5 of 5)	intron (NM_024060, intron 5 of 5)	62564	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
165111	chr3	71585201	71585830	+	0	NA	Intergenic	Intergenic	-1537	NM_001244810	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
108623	chr18	76376371	76377150	+	0	NA	intron (NM_014643, intron 4 of 6)	intron (NM_014643, intron 4 of 6)	-114892	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
232758	chr9	136668071	136668630	+	0	NA	exon (NM_201446, exon 2 of 9)	exon (NM_201446, exon 2 of 9)	-2252	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
231624	chr9	131583701	131584230	+	0	NA	intron (NM_001377935, intron 24 of 26)	intron (NM_001377935, intron 24 of 26)	38442	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
124894	chr2	8432971	8433980	+	0	NA	Intergenic	Intergenic	-105056	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
228272	chr9	98063071	98063630	+	0	NA	intron (NM_018946, intron 2 of 5)	AluSx1|SINE|Alu	6618	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
202271	chr6	157045751	157046130	+	0	NA	intron (NM_001363725, intron 2 of 17)	intron (NM_001363725, intron 2 of 17)	9513	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
112349	chr19	5949801	5950750	+	0	NA	intron (NM_007320, intron 2 of 15)	intron (NM_007320, intron 2 of 15)	27865	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
58274	chr12	128969421	128969780	+	0	NA	intron (NM_144669, intron 7 of 7)	intron (NM_144669, intron 7 of 7)	116122	NM_001366888	144423		NM_144669	ENSG00000151948	GLT1D1	-	glycosyltransferase 1 domain containing 1	protein-coding
221973	chr8	129985801	129986430	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	22338	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
25663	chr10	8361471	8361630	+	0	NA	Intergenic	Intergenic	-93245	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
36151	chr11	3140271	3140430	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	24960	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
114529	chr19	12833711	12834630	+	0	NA	intron (NM_031429, intron 2 of 6)	CpG	406	NM_001270442	83546		NM_031429	ENSG00000132026	RTBDN	-	retbindin	protein-coding
22984	chr1	226096401	226097000	+	0	NA	Intergenic	AluJr|SINE|Alu	13125	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
133696	chr2	127197671	127198100	+	0	NA	intron (NM_001367501, intron 4 of 7)	intron (NM_001367501, intron 4 of 7)	7882	NM_001001665	339761		NM_001001665	ENSG00000186684	CYP27C1	-	cytochrome P450 family 27 subfamily C member 1	protein-coding
235961	chrX	53441121	53442400	+	0	NA	Intergenic	CpG	-7384	NM_001037811	3028		NM_004493	ENSG00000072506	HSD17B10	17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1	hydroxysteroid 17-beta dehydrogenase 10	protein-coding
8686	chr1	41994651	41994750	+	0	NA	intron (NR_038261, intron 1 of 3)	MSTA|LTR|ERVL-MaLR	41234	NR_038261	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
229948	chr9	126676851	126677800	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	63397	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
3137	chr1	12458521	12458780	+	0	NA	intron (NM_018156, intron 65 of 68)	intron (NM_018156, intron 65 of 68)	-48596	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
41018	chr11	65433971	65434430	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	-10258	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
233190	chr9	137203271	137203830	+	0	NA	TTS (NM_053045)	TTS (NM_053045)	2098	NM_053045	94107		NM_053045	ENSG00000187713	TMEM203	HBEBP1	transmembrane protein 203	protein-coding
145462	chr20	43718021	43718480	+	0	NA	Intergenic	AluJb|SINE|Alu	8752	NM_001008901	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
155792	chr22	39298071	39298230	+	0	NA	Intergenic	Intergenic	15761	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
40716	chr11	64798851	64799200	+	0	NA	intron (NM_004579, intron 14 of 31)	intron (NM_004579, intron 14 of 31)	4189	NM_004579	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
115712	chr19	16217921	16218380	+	0	NA	intron (NM_001130524, intron 6 of 12)	MER66B|LTR|ERV1	20239	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
129198	chr2	68201251	68201550	+	0	NA	intron (NM_000945, intron 2 of 5)	intron (NM_000945, intron 2 of 5)	43512	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
231723	chr9	131757271	131757730	+	0	NA	Intergenic	AluJb|SINE|Alu	-17424	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
177191	chr4	108174871	108175230	+	0	NA	intron (NR_029373, intron 2 of 2)	intron (NR_029373, intron 2 of 2)	2930	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
102455	chr17	75706951	75707650	+	0	NA	non-coding (NR_126037, exon 9 of 9)	non-coding (NR_126037, exon 9 of 9)	-14159	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
108724	chr18	77088051	77088150	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	44683	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
18971	chr1	169086871	169087480	+	0	NA	promoter-TSS (NR_104091)	promoter-TSS (NR_104091)	-170	NR_104091	101978719		NR_104091	ENSG00000203601	LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
106048	chr18	8982471	8982630	+	0	NA	Intergenic	AluYb8|SINE|Alu	-120149	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
133940	chr2	130548501	130548700	+	0	NA	intron (NR_033930, intron 1 of 2)	intron (NR_033930, intron 1 of 2)	1295	NR_027314	150527		NR_027313	ENSG00000290614	PRSS40A	TISP43	serine protease 40A (pseudogene)	pseudo
125281	chr2	10478671	10479180	+	0	NA	Intergenic	Intergenic	29197	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
126737	chr2	30199421	30199680	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	12116	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
211771	chr7	107501571	107501770	+	0	NA	intron (NM_001379511, intron 6 of 20)	intron (NM_001379511, intron 6 of 20)	31613	NM_005295	2845		NM_005295	ENSG00000172209	GPR22	-	G protein-coupled receptor 22	protein-coding
18302	chr1	161158901	161161380	+	0	NA	intron (NM_001319847, intron 1 of 12)	intron (NM_001319847, intron 1 of 12)	640	NM_012475	27005		NM_012475	ENSG00000143258	USP21	USP16|USP23	ubiquitin specific peptidase 21	protein-coding
63683	chr14	21083651	21084150	+	0	NA	exon (NM_018071, exon 17 of 24)	exon (NM_018071, exon 17 of 24)	-13028	NM_001282211	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
235855	chrX	50381801	50382000	+	0	NA	intron (NM_001013742, intron 18 of 27)	intron (NM_001013742, intron 18 of 27)	88925	NM_001013742	139189		NM_001013742	ENSG00000274588	DGKK	-	diacylglycerol kinase kappa	protein-coding
19350	chr1	173850571	173851400	+	0	NA	intron (NM_018122, intron 13 of 16)	AluSx1|SINE|Alu	-12263	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
189625	chr5	176030101	176031900	+	0	NA	Intergenic	Intergenic	31055	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
226105	chr9	62850021	62850280	+	0	NA	Intergenic	AluY|SINE|Alu	9505	NR_135010	442421		NR_024496		PTGER4P2-CDK2AP2P2	-	PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene	pseudo
145575	chr20	44490651	44491250	+	0	NA	3' UTR (NM_024331, exon 6 of 6)	3' UTR (NM_024331, exon 6 of 6)	15076	NM_001261839	79183		NM_024331	ENSG00000124120	TTPAL	C20orf121	alpha tocopherol transfer protein like	protein-coding
57856	chr12	123278251	123278550	+	0	NA	Intergenic	L1MB7|LINE|L1	-6160	NR_073007	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
2424	chr1	9595971	9596130	+	0	NA	intron (NM_001130924, intron 2 of 10)	intron (NM_001130924, intron 2 of 10)	7139	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
65270	chr14	49981221	49981480	+	0	NA	TTS (NR_126497)	TTS (NR_126497)	11784	NR_126499	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
81657	chr16	10966371	10966880	+	0	NA	intron (NM_001243403, intron 3 of 20)	THE1C|LTR|ERVL-MaLR	22061	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
8713	chr1	42344221	42344590	+	0	NA	Intergenic	L2a|LINE|L2	-8525	NM_001198850	22887		NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
149325	chr21	29037771	29037930	+	0	NA	intron (NM_006447, intron 6 of 17)	AluJb|SINE|Alu	13182	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
182153	chr5	56491021	56491400	+	0	NA	Intergenic	Intergenic	-9441	NR_104664	102467147		NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
217171	chr8	26300551	26300950	+	0	NA	intron (NM_002717, intron 2 of 9)	AluSx4|SINE|Alu	7534	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
101058	chr17	64831601	64832200	+	0	NA	intron (NR_024386, intron 1 of 10)	intron (NR_024386, intron 1 of 10)	5284	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
67857	chr14	74238021	74238280	+	0	NA	Intergenic	Intergenic	-1299	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
29962	chr10	73591251	73592530	+	0	NA	promoter-TSS (NR_135249)	promoter-TSS (NR_135249)	-548	NM_001320441	159195		NM_152586	ENSG00000166348	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
171791	chr4	473071	474750	+	0	NA	intron (NM_133474, intron 1 of 2)	CpG	299	NR_002451	79963		NM_024903	ENSG00000293360	ABCA11P	ABCA11|EST1133530	ATP binding cassette subfamily A member 11, pseudogene	pseudo
237123	chrX	106481321	106481630	+	0	NA	Intergenic	Intergenic	-130455	NM_001184782	55086		NM_018015	ENSG00000147231	RADX	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein-coding
24374	chr1	241642071	241642230	+	0	NA	Intergenic	AluJo|SINE|Alu	-1781	NM_001381854	1122		NM_001821	ENSG00000203668	CHML	REP2	CHM like Rab escort protein	protein-coding
204524	chr7	4800501	4801030	+	0	NA	intron (NM_018059, intron 12 of 14)	intron (NM_018059, intron 12 of 14)	-12126	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
65471	chr14	51848221	51848680	+	0	NA	Intergenic	L2a|LINE|L2	-12162	NM_001243773	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
61479	chr13	52446301	52447050	+	0	NA	intron (NM_001282168, intron 1 of 13)	L1ME4a|LINE|L1	3569	NM_001282169	51028		NM_016075	ENSG00000136100	VPS36	C13orf9|CGI-145|EAP45	vacuolar protein sorting 36 homolog	protein-coding
23038	chr1	226475171	226475330	+	0	NA	Intergenic	Intergenic	-67157	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
152965	chr22	23066571	23066730	+	0	NA	intron (NM_014433, intron 4 of 6)	intron (NM_014433, intron 4 of 6)	-3869	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
166817	chr3	122682801	122683400	+	0	NA	intron (NM_017554, intron 1 of 16)	(AAAC)n|Simple_repeat|Simple_repeat	2261	NM_017554	54625		NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	poly(ADP-ribose) polymerase family member 14	protein-coding
202344	chr6	157561771	157562480	+	0	NA	intron (NM_024630, intron 2 of 8)	intron (NM_024630, intron 2 of 8)	32993	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
195266	chr6	36445151	36445530	+	0	NA	intron (NR_104481, intron 1 of 3)	intron (NR_104481, intron 1 of 3)	2340	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
10488	chr1	66371371	66371800	+	0	NA	intron (NM_001037340, intron 14 of 14)	intron (NM_001037340, intron 14 of 14)	17050	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
104988	chr17	82009621	82010080	+	0	NA	intron (NR_045351, intron 8 of 14)	intron (NR_045351, intron 8 of 14)	13028	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
211627	chr7	106058071	106058730	+	0	NA	Intergenic	Intergenic	53912	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
171460	chr3	196339651	196339950	+	0	NA	Intergenic	L1ME3|LINE|L1	-1380	NR_037950	100534611		NR_037950		TM4SF19-DYNLT2B	TM4SF19-TCTEX1D2	TM4SF19-DYNLT2B readthrough (NMD candidate)	ncRNA
163879	chr3	52505771	52506480	+	0	NA	intron (NM_015136, intron 16 of 68)	intron (NM_015136, intron 16 of 68)	10787	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
41226	chr11	65714021	65714500	+	0	NA	intron (NM_182709, intron 6 of 12)	AluSx1|SINE|Alu	2008	NM_006388	10524		NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|NEDFASB|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
225667	chr9	36462371	36463080	+	0	NA	Intergenic	AluSx|SINE|Alu	-61527	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
115559	chr19	15584251	15584980	+	0	NA	Intergenic	CpG	-30603	NM_007253	11283		NM_007253	ENSG00000186526	CYP4F8	CPF8|CYPIVF8	cytochrome P450 family 4 subfamily F member 8	protein-coding
73330	chr15	41965501	41965700	+	0	NA	intron (NM_139265, intron 1 of 5)	MER5A|DNA|hAT-Charlie	6957	NM_139265	30844		NM_139265	ENSG00000103966	EHD4	PAST4	EH domain containing 4	protein-coding
72850	chr15	40238521	40239550	+	0	NA	promoter-TSS (NM_020168)	promoter-TSS (NM_020168)	-28	NM_001276718	56924		NM_020168	ENSG00000137843	PAK6	PAK5	p21 (RAC1) activated kinase 6	protein-coding
100325	chr17	59844001	59844950	+	0	NA	Intergenic	AluSz|SINE|Alu	3209	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
85707	chr16	56607001	56607400	+	0	NA	Intergenic	L2a|LINE|L2	-1384	NM_005953	4502		NM_005953	ENSG00000125148	MT2A	MT-2|MT-II|MT2	metallothionein 2A	protein-coding
232570	chr9	136368601	136369000	+	0	NA	intron (NM_052813, intron 7 of 12)	AluJb|SINE|Alu	4869	NM_052814	64170		NM_022352	ENSG00000187796	CARD9	CANDF2|IMD103|hCARD9	caspase recruitment domain family member 9	protein-coding
5834	chr1	26701751	26702150	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	5935	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
59519	chr13	27146871	27147030	+	0	NA	intron (NR_046547, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	21417	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
7782	chr1	36229801	36230000	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluSp|SINE|Alu	5457	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
99966	chr17	57530421	57530730	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	-6978	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
142850	chr20	17612271	17613080	+	0	NA	Intergenic	Intergenic	42600	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
31244	chr10	91925471	91925850	+	0	NA	intron (NR_165098, intron 1 of 38)	AluY|SINE|Alu	1890	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
14549	chr1	144881571	144882200	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	163714	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
181128	chr5	37721571	37722080	+	0	NA	intron (NM_018034, intron 14 of 17)	intron (NM_018034, intron 14 of 17)	112997	NM_001278098	2668		NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
15576	chr1	150566841	150568700	+	0	NA	intron (NR_104133, intron 2 of 3)	intron (NR_104133, intron 2 of 3)	6782	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
95855	chr17	38830521	38830780	+	0	NA	Intergenic	AluJb|SINE|Alu	4812	NR_039880	100616416		NR_039880	ENSG00000274054	MIR4727	mir-4727	microRNA 4727	ncRNA
102023	chr17	74851601	74851800	+	0	NA	intron (NM_001278553, intron 3 of 11)	intron (NM_001278553, intron 3 of 11)	8184	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
196880	chr6	52176371	52176930	+	0	NA	Intergenic	Intergenic	-9725	NM_002190	3605		NM_002190	ENSG00000112115	IL17A	CTLA-8|CTLA8|IL-17|IL-17A|IL17|ILA17	interleukin 17A	protein-coding
40176	chr11	62893401	62893630	+	0	NA	Intergenic	AluSx1|SINE|Alu	11816	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
78284	chr15	90881771	90882230	+	0	NA	non-coding (NR_168464, exon 16 of 16)	non-coding (NR_168464, exon 16 of 16)	-2504	NM_002005	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
24	chr1	39201	39680	+	0	NA	Intergenic	MLT1E1A-int|LTR|ERVL-MaLR	-3359	NR_026818	645520		NR_026818	ENSG00000237613	FAM138A	F379|FAM138F	family with sequence similarity 138 member A	ncRNA
218729	chr8	58724651	58724750	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-64847	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
152851	chr22	22204221	22204300	+	0	NA	Intergenic	AluY|SINE|Alu	-40526	NM_001303509	7441		NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	V-set pre-B cell surrogate light chain 1	protein-coding
169863	chr3	177203151	177203650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-5918	NM_001374330	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
8620	chr1	41671321	41671580	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-186767	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
121695	chr19	47544871	47545800	+	0	NA	exon (NM_001277075, exon 5 of 17)	exon (NM_001277075, exon 5 of 17)	27813	NM_001277075	84215		NM_032255	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
128498	chr2	59314551	59314650	+	0	NA	Intergenic	Intergenic	96892	NR_110219	101927285		NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
234825	chrX	24170171	24170330	+	0	NA	intron (NM_001178085, intron 4 of 10)	AluSx1|SINE|Alu	20521	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
13021	chr1	111201551	111201980	+	0	NA	intron (NM_001271833, intron 1 of 11)	intron (NM_001271833, intron 1 of 11)	-1119	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
232327	chr9	135196371	135196850	+	0	NA	Intergenic	Intergenic	15001	NR_046107	401557		NR_046107		LOC401557	-	uncharacterized LOC401557	ncRNA
77701	chr15	85675671	85676030	+	0	NA	intron (NM_007200, intron 14 of 36)	intron (NM_007200, intron 14 of 36)	55900	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
102329	chr17	75403301	75403500	+	0	NA	intron (NM_203506, intron 1 of 4)	intron (NM_203506, intron 1 of 4)	2278	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
236002	chrX	54639201	54640280	+	0	NA	Intergenic	CpG	109521	NM_001184819	54552		NM_019067	ENSG00000130119	GNL3L	GNL3B	G protein nucleolar 3 like	protein-coding
34935	chr11	438801	439430	+	0	NA	intron (NM_001347882, intron 1 of 21)	intron (NM_001347882, intron 1 of 21)	2896	NM_001347882	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
39689	chr11	61732271	61732630	+	0	NA	intron (NM_006133, intron 9 of 19)	intron (NM_006133, intron 9 of 19)	-20186	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
49617	chr12	27822071	27822730	+	0	NA	Intergenic	Intergenic	-42164	NM_001146221	100287284		NM_001146221	ENSG00000205693	MANSC4	-	MANSC domain containing 4	protein-coding
118643	chr19	37297521	37297800	+	0	NA	Intergenic	SST1|Satellite|centr	-15177	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
147582	chr20	61263251	61263350	+	0	NA	intron (NM_001794, intron 2 of 15)	intron (NM_001794, intron 2 of 15)	11039	NM_001794	1002		NM_001794	ENSG00000179242	CDH4	CAD4|R-CAD|RCAD	cadherin 4	protein-coding
187357	chr5	141701551	141704030	+	0	NA	Intergenic	CpG	-20560	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
27435	chr10	31756021	31756530	+	0	NA	Intergenic	L2a|LINE|L2	152651	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
119475	chr19	40440251	40440580	+	0	NA	TTS (NM_013368)	TTS (NM_013368)	2183	NM_013368	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
232243	chr9	134389401	134389750	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	10164	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
178945	chr4	159079021	159079280	+	0	NA	Intergenic	Intergenic	-24901	NM_001351724	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
129007	chr2	64838771	64838930	+	0	NA	Intergenic	(CCACC)n|Simple_repeat|Simple_repeat	24781	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
6421	chr1	28087821	28089300	+	0	NA	promoter-TSS (NM_001990)	promoter-TSS (NM_001990)	50	NM_001282560	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
234547	chrX	19709021	19709280	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	-38151	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
104549	chr17	81305721	81305980	+	0	NA	intron (NR_038080, intron 2 of 3)	MLT1C|LTR|ERVL-MaLR	3398	NR_038080	284185		NM_178519		LINC00482	C17orf55	long intergenic non-protein coding RNA 482	ncRNA
128466	chr2	55718221	55718500	+	0	NA	Intergenic	Intergenic	-24516	NM_033109	87178		NM_033109	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|SCA25|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
98875	chr17	48543171	48545030	+	0	NA	promoter-TSS (NR_102279)	promoter-TSS (NR_102279)	-251	NR_102279	100874362		NR_102279	ENSG00000230148	HOXB-AS1	HOXB3OS	HOXB cluster antisense RNA 1	ncRNA
56149	chr12	111331101	111331450	+	0	NA	intron (NM_015267, intron 18 of 21)	intron (NM_015267, intron 18 of 21)	27133	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
18556	chr1	162567951	162568450	+	0	NA	intron (NM_001324114, intron 2 of 9)	intron (NM_001324114, intron 2 of 9)	6301	NM_001324114	6675		NM_003115	ENSG00000117143	UAP1	AGX|AGX1|AGX2|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
220401	chr8	100255901	100256830	+	0	NA	TTS (NM_001280539)	TTS (NM_001280539)	45828	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
210454	chr7	100121951	100122400	+	0	NA	intron (NM_152755, intron 1 of 5)	MIR|SINE|MIR	-2317	NM_001190415	6878		NM_005641	ENSG00000106290	TAF6	ALYUS|MGC:8964|TAF(II)70|TAF(II)80|TAF2E|TAFII-70|TAFII-80|TAFII70|TAFII80|TAFII85	TATA-box binding protein associated factor 6	protein-coding
219251	chr8	67210971	67211130	+	0	NA	intron (NM_006421, intron 34 of 38)	AluSx1|SINE|Alu	127202	NM_001291339	79848		NM_024790	ENSG00000104218	CSPP1	CSPP|CSPP-L|JBTS21	centrosome and spindle pole associated protein 1	protein-coding
229204	chr9	114738001	114738230	+	0	NA	Intergenic	Intergenic	54415	NM_001204344	9966		NM_005118	ENSG00000181634	TNFSF15	TL1|TL1A|TNLG1B|VEGI|VEGI192A	TNF superfamily member 15	protein-coding
89058	chr16	88446851	88447430	+	0	NA	Intergenic	Intergenic	-6140	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
119562	chr19	40625551	40626050	+	0	NA	intron (NM_001042544, intron 29 of 32)	intron (NM_001042544, intron 29 of 32)	24431	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
30035	chr10	73800601	73801450	+	0	NA	TTS (NM_003635)	TTS (NM_003635)	374	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
118744	chr19	38318221	38318680	+	0	NA	Intergenic	AluJo|SINE|Alu	-1395	NM_004823	9424		NM_004823	ENSG00000099337	KCNK6	K2p6.1|KCNK8|TOSS|TWIK-2|TWIK2	potassium two pore domain channel subfamily K member 6	protein-coding
116028	chr19	17173471	17173830	+	0	NA	intron (NM_004145, intron 13 of 39)	intron (NM_004145, intron 13 of 39)	-41707	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
86076	chr16	57615401	57615600	+	0	NA	Intergenic	Intergenic	-4238	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
76509	chr15	74959321	74959750	+	0	NA	Intergenic	CpG	-2763	NM_017793	54913		NM_017793	ENSG00000178718	RPP25	-	ribonuclease P and MRP subunit p25	protein-coding
206907	chr7	38070771	38070930	+	0	NA	Intergenic	Intergenic	-107395	NM_001363347	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
136909	chr2	189656971	189657130	+	0	NA	Intergenic	L1PA7|LINE|L1	-4349	NM_001353494	110599588		NM_001353493	ENSG00000286053	ASDURF	ASNSD1|ASNSD1-SEP|NS3TP1	ASNSD1 upstream open reading frame	protein-coding
153137	chr22	23762171	23762330	+	0	NA	promoter-TSS (NM_001376905)	promoter-TSS (NM_001376905)	-740	NM_001376904	150248		NM_182520	ENSG00000169314	C22orf15	N27C7-3	chromosome 22 open reading frame 15	protein-coding
55535	chr12	105329971	105331500	+	0	NA	promoter-TSS (NM_001145199)	promoter-TSS (NM_001145199)	44	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
70493	chr14	102095221	102095500	+	0	NA	intron (NM_001017963, intron 2 of 11)	intron (NM_001017963, intron 2 of 11)	-8316	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
150969	chr21	44323451	44324200	+	0	NA	exon (NM_002626, exon 16 of 22)	exon (NM_002626, exon 16 of 22)	14513	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
27957	chr10	42099771	42100030	+	0	NA	Intergenic	Intergenic	268145	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
195298	chr6	36538751	36539430	+	0	NA	intron (NM_007271, intron 2 of 13)	intron (NM_007271, intron 2 of 13)	8389	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
227452	chr9	90762771	90762930	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-38750	NM_001174168	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
82470	chr16	17130801	17131000	+	0	NA	intron (NM_022166, intron 9 of 11)	L2a|LINE|L2	-3604	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
69862	chr14	99269691	99270400	+	0	NA	intron (NM_022898, intron 1 of 2)	CpG	2152	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
3906	chr1	17211721	17211980	+	0	NA	intron (NM_013358, intron 1 of 15).2	MIRc|SINE|MIR	6722	NM_013358	29943		NM_013358	ENSG00000142623	PADI1	HPAD10|PAD1|PDI|PDI1	peptidyl arginine deiminase 1	protein-coding
125533	chr2	12990601	12990800	+	0	NA	intron (NR_038434, intron 4 of 5)	intron (NR_038434, intron 4 of 5)	16313	NR_038434	100506474		NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
87486	chr16	71792551	71793480	+	0	NA	intron (NM_001128, intron 1 of 22)	AluJb|SINE|Alu	15819	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
68451	chr14	82642551	82642650	+	0	NA	promoter-TSS (NR_146650)	promoter-TSS (NR_146650)	-32	NR_146650	101928599		NR_146650	ENSG00000258743	LINC02301	-	long intergenic non-protein coding RNA 2301	ncRNA
136659	chr2	180359821	180360680	+	0	NA	Intergenic	L1PBa|LINE|L1	-331854	NR_104323	101669767		NR_104319	ENSG00000281131	SCHLAP1	LINC00913|PCAT11|PCAT114	SWI/SNF complex antagonist associated with prostate cancer 1	ncRNA
34457	chr10	132439751	132439850	+	0	NA	Intergenic	(TGTGGATGCA)n|Simple_repeat|Simple_repeat	-5389	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
58122	chr12	124892651	124892750	+	0	NA	Intergenic	AluJb|SINE|Alu	21950	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
206657	chr7	36283201	36284380	+	0	NA	intron (NM_030636, intron 4 of 7)	intron (NM_030636, intron 4 of 7)	83450	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
199181	chr6	111764051	111765400	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-4808	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
148159	chr20	63522071	63522330	+	0	NA	TTS (NM_001353423)	TTS (NM_001353423)	1435	NM_024299	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
86283	chr16	58605521	58606000	+	0	NA	intron (NM_206999, intron 1 of 30)	AluJb|SINE|Alu	24066	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
192197	chr6	17700571	17701080	+	0	NA	intron (NM_001278209, intron 1 of 22)	MER58C|DNA|hAT-Charlie	-5305	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
49952	chr12	40145201	40145980	+	0	NA	Intergenic	Intergenic	-10649	NR_146526	105369734		NR_146526		LINC02471	-	long intergenic non-protein coding RNA 2471	ncRNA
122290	chr19	49089251	49089950	+	0	NA	intron (NM_003089, intron 2 of 9)	MER5C|DNA|hAT-Charlie	4149	NM_001301069	6625		NM_003089	ENSG00000104852	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein U1 subunit 70	protein-coding
234792	chrX	24013171	24013530	+	0	NA	intron (NM_030624, intron 2 of 3)	AluSz|SINE|Alu	13836	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
154961	chr22	37265351	37265650	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-17008	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
42735	chr11	72697051	72697780	+	0	NA	exon (NM_001135190, exon 18 of 31)	exon (NM_001135190, exon 18 of 31)	-3059	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
186270	chr5	134534971	134535380	+	0	NA	intron (NM_015288, intron 1 of 10)	intron (NM_015288, intron 1 of 10)	9067	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
41703	chr11	66645651	66645750	+	0	NA	intron (NM_002896, intron 3 of 3)	intron (NM_002896, intron 3 of 3)	6997	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
180802	chr5	32309871	32310030	+	0	NA	intron (NM_001294344, intron 1 of 13)	L1MA3|LINE|L1	2989	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
187965	chr5	149381471	149382150	+	0	NA	intron (NM_001317987, intron 1 of 2)	intron (NM_001317987, intron 1 of 2)	-2518	NM_014443	27190		NM_014443	ENSG00000127743	IL17B	IL-17B|IL-20|NIRF|ZCYTO7	interleukin 17B	protein-coding
68110	chr14	75419471	75419830	+	0	NA	Intergenic	Intergenic	-8074	NM_001135047	122953		NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
149541	chr21	33028701	33029200	+	0	NA	3' UTR (NM_005806, exon 2 of 2)	3' UTR (NM_005806, exon 2 of 2)	3015	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
156743	chr22	41825351	41825650	+	0	NA	intron (NM_024821, intron 6 of 6)	L2b|LINE|L2	-7605	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
159540	chr3	14548301	14548830	+	0	NA	Intergenic	Intergenic	-8223	NM_001080423	80852		NM_001080423	ENSG00000144596	GRIP2	-	glutamate receptor interacting protein 2	protein-coding
226111	chr9	62882621	62883130	+	0	NA	intron (NR_122076, intron 1 of 5)	intron (NR_122076, intron 1 of 5)	-14501	NR_126047	728673		NR_126047	ENSG00000170161	FAM88B	-	family with sequence similarity 88 member B	ncRNA
84014	chr16	29463601	29464030	+	0	NA	intron (NM_001017390, intron 6 of 7).2	intron (NM_001017390, intron 6 of 7).2	3763	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
661	chr1	1362921	1363380	+	0	NA	intron (NM_001282582, intron 1 of 10)	AluSx4|SINE|Alu	391	NM_001282582	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
97616	chr17	44139351	44139450	+	0	NA	Intergenic	Intergenic	-2530	NM_001171251	78995		NM_024032	ENSG00000125319	HROB	C17orf53|MCM8IP	homologous recombination factor with OB-fold	protein-coding
12336	chr1	101066471	101067150	+	0	NA	intron (NR_109849, intron 1 of 4)	L1PA11|LINE|L1	40964	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
13856	chr1	117665851	117666050	+	0	NA	Intergenic	L1MEc|LINE|L1	59902	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
157153	chr22	42860801	42861200	+	0	NA	Intergenic	L1MCc|LINE|L1	-3727	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
124138	chr19	55692871	55693030	+	0	NA	intron (NM_001321263, intron 8 of 10)	intron (NM_001321263, intron 8 of 10)	16325	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
144960	chr20	37183871	37184230	+	0	NA	intron (NM_001324299, intron 1 of 16)	L3|LINE|CR1	-4502	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
48900	chr12	12548771	12549330	+	0	NA	intron (NM_030640, intron 1 of 6)	intron (NM_030640, intron 1 of 6)	13813	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
93575	chr17	19106101	19106850	+	0	NA	Intergenic	AluJb|SINE|Alu	6161	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
55114	chr12	98522701	98523100	+	0	NA	intron (NM_001307975, intron 1 of 7)	MIR|SINE|MIR	-6674	NR_027157	100128191		NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
187851	chr5	147713701	147713900	+	0	NA	intron (NM_014790, intron 1 of 20)	L1MEg|LINE|L1	68928	NM_001282282	9832		NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
33370	chr10	117342171	117342630	+	0	NA	intron (NM_173791, intron 1 of 4)	(AC)n|Simple_repeat|Simple_repeat	33040	NM_173791	118987		NM_173791	ENSG00000165650	PDZD8	IDDADF|PDZK8	PDZ domain containing 8	protein-coding
75784	chr15	68798521	68798780	+	0	NA	intron (NM_006305, intron 1 of 6)	intron (NM_006305, intron 1 of 6)	3275	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
197099	chr6	57087321	57087950	+	0	NA	Intergenic	AluJr|SINE|Alu	-2395	NM_015555	26036		NM_015555	ENSG00000112200	ZNF451	COASTER|ZATT|dJ417I1.1	zinc finger protein 451	protein-coding
56347	chr12	113030901	113031200	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-25680	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
145224	chr20	38915801	38916200	+	0	NA	intron (NM_001172735, intron 9 of 9)	intron (NM_001172735, intron 9 of 9)	-10417	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
212873	chr7	130869151	130869450	+	0	NA	Intergenic	Intergenic	7510	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
224409	chr9	14846871	14847030	+	0	NA	TTS (NM_001370065)	TTS (NM_001370065)	63478	NM_001370063	158326		NM_144966	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
163846	chr3	52481221	52481730	+	0	NA	3' UTR (NM_001276293, exon 13 of 13)	3' UTR (NM_001276293, exon 13 of 13)	-13863	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
165105	chr3	71568301	71568500	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	15328	NM_001349338	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
84837	chr16	31119551	31119650	+	0	NA	intron (NM_032188, intron 1 of 10)	MIRc|SINE|MIR	1936	NM_032188	84148		NM_032188	ENSG00000103510	KAT8	LIGOWS|MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
89126	chr16	88505421	88506630	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	25028	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
232821	chr9	136724871	136725950	+	0	NA	TTS (NR_002975)	TTS (NR_002975)	827	NR_002975	677824		NR_002975	ENSG00000280496	SNORA17B	ACA43|SNORA43	small nucleolar RNA, H/ACA box 17B	snoRNA
142782	chr20	13219821	13220500	+	0	NA	Intergenic	CpG	-1114	NM_080826	140862		NM_080826	ENSG00000101230	ISM1	C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1	isthmin 1	protein-coding
154855	chr22	37121901	37122930	+	0	NA	Intergenic	Intergenic	-12702	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
210040	chr7	94509121	94511580	+	0	NA	intron (NM_022900, intron 1 of 17)	CpG	541	NM_001363427	64921		NM_022900	ENSG00000127995	CASD1	C7orf12|Cas1|NBLA04196|SOAT	CAS1 domain containing 1	protein-coding
100541	chr17	62510971	62511750	+	0	NA	intron (NM_001375273, intron 3 of 21)	L1MD2|LINE|L1	30247	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
82609	chr16	18903401	18903600	+	0	NA	intron (NM_015092, intron 1 of 62)	L2|LINE|L2	22908	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
27612	chr10	32912301	32912730	+	0	NA	intron (NM_133376, intron 11 of 15)	L1PA5|LINE|L1	-11043	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
129834	chr2	72823821	72824680	+	0	NA	intron (NR_135773, intron 1 of 21)	AluJb|SINE|Alu	1783	NM_001321730	23233		NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2|SEMDJL3	exocyst complex component 6B	protein-coding
80914	chr16	3770451	3770750	+	0	NA	exon (NM_001079846, exon 13 of 30)	exon (NM_001079846, exon 13 of 30)	-53076	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
197142	chr6	59530651	59530950	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1569354	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
105421	chr17	82861571	82861730	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-21628	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
9284	chr1	46407321	46407850	+	0	NA	intron (NM_001441, intron 7 of 14)	(TGTCTC)n|Simple_repeat|Simple_repeat	13268	NM_001441	2166		NM_001441	ENSG00000117480	FAAH	FAAH-1|FAAH1|PSAB	fatty acid amide hydrolase	protein-coding
88207	chr16	81818971	81819130	+	0	NA	intron (NM_002661, intron 2 of 32)	MIRb|SINE|MIR	39759	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
183333	chr5	76730871	76731430	+	0	NA	intron (NM_001311313, intron 2 of 2)	intron (NM_001311313, intron 2 of 2)	15024	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
196752	chr6	45428551	45429150	+	0	NA	intron (NM_001278478, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	6575	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
156644	chr22	41626071	41626850	+	0	NA	intron (NM_001288978, intron 2 of 11)	AluSz|SINE|Alu	5165	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
144648	chr20	36050461	36051700	+	0	NA	promoter-TSS (NR_027451)	promoter-TSS (NR_027451)	-120	NR_027451	647979		NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
52375	chr12	55705601	55706350	+	0	NA	intron (NM_001367993, intron 2 of 25)	intron (NM_001367993, intron 2 of 25)	1929	NM_001374465	3679		NM_002206	ENSG00000135424	ITGA7	-	integrin subunit alpha 7	protein-coding
123675	chr19	54959901	54960100	+	0	NA	Intergenic	Intergenic	-5284	NM_001174081	55655		NM_017852	ENSG00000022556	NLRP2	CLR19.9|NALP2|NBS1|OZEMA18|PAN1|PYPAF2	NLR family pyrin domain containing 2	protein-coding
225305	chr9	34579051	34580030	+	0	NA	intron (NM_001842, intron 1 of 8)	intron (NM_001842, intron 1 of 8)	10184	NM_147164	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
19885	chr1	183637121	183637380	+	0	NA	intron (NM_015149, intron 1 of 18)	intron (NM_015149, intron 1 of 18)	1141	NM_001297670	23179		NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
87295	chr16	70067971	70068730	+	0	NA	Intergenic	AluSx|SINE|Alu	-2402	NR_003610	283970		NM_199134	ENSG00000196696	PDXDC2P-NPIPB14P	-	PDXDC2P-NPIPB14P readthrough, transcribed pseudogene	pseudo
194018	chr6	31817411	31819300	+	0	NA	TTS (NM_005345)	TTS (NM_005345)	2812	NM_005345	3303		NM_005345	ENSG00000204389	HSPA1A	HEL-S-103|HSP70|HSP70-1|HSP70-1A|HSP70-2|HSP70.1|HSP70.2|HSP70I|HSP72|HSPA1	heat shock protein family A (Hsp70) member 1A	protein-coding
198958	chr6	110877471	110878150	+	0	NA	intron (NM_001287216, intron 1 of 4)	intron (NM_001287216, intron 1 of 4)	3026	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
176681	chr4	100569051	100569450	+	0	NA	Intergenic	Intergenic	-51228	NM_016242	51705		NM_016242	ENSG00000164035	EMCN	EMCN2|MUC14	endomucin	protein-coding
4178	chr1	19423271	19424030	+	0	NA	intron (NM_001313932, intron 1 of 4)	AluJo|SINE|Alu	60645	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
197393	chr6	73502571	73503730	+	0	NA	3' UTR (NM_001123226, exon 13 of 13)	3' UTR (NM_001123226, exon 13 of 13)	15288	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
61600	chr13	73120851	73121350	+	0	NA	Intergenic	AluY|SINE|Alu	62095	NM_001730	688		NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	KLF transcription factor 5	protein-coding
96588	chr17	40518051	40518730	+	0	NA	Intergenic	Intergenic	-16767	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
237770	chrX	129767601	129767900	+	0	NA	intron (NM_003399, intron 20 of 20)	(TCCCTG)n|Simple_repeat|Simple_repeat	-12199	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
52423	chr12	55815071	55815880	+	0	NA	intron (NM_033082, intron 1 of 10)	AluSz6|SINE|Alu	2249	NM_033082	84324		NM_033082	ENSG00000205323	SARNP	CIP29|HCC1|HSPC316|THO1	SAP domain containing ribonucleoprotein	protein-coding
82063	chr16	13919451	13920830	+	0	NA	promoter-TSS (NM_005236)	promoter-TSS (NM_005236)	-14	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
96312	chr17	39966801	39967400	+	0	NA	intron (NM_178171, intron 3 of 11)	L2c|LINE|L2	4096	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
152357	chr22	20465401	20465950	+	0	NA	intron (NR_033825, intron 2 of 5)	intron (NR_033825, intron 2 of 5)	-27850	NM_182895	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
195683	chr6	38494001	38494280	+	0	NA	intron (NM_001172418, intron 5 of 10)	intron (NM_001172418, intron 5 of 10)	12544	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
183039	chr5	73298121	73298380	+	0	NA	Intergenic	Intergenic	-39656	NR_146627	105379033		NR_146627		LINC02230	-	long intergenic non-protein coding RNA 2230	ncRNA
87260	chr16	69930051	69930500	+	0	NA	intron (NM_199424, intron 3 of 13)	intron (NM_199424, intron 3 of 13)	-2806	NR_029681	406932		NR_029681	ENSG00000208017	MIR140	MIRN140|SEDN|miRNA140|mir-140	microRNA 140	ncRNA
153269	chr22	24143201	24143400	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-38187	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
36211	chr11	3487721	3488330	+	0	NA	Intergenic	Intergenic	-10952	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
198608	chr6	107724821	107725080	+	0	NA	intron (NM_001286408, intron 4 of 6)	L1MA4|LINE|L1	7200	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
191405	chr6	8433551	8433950	+	0	NA	intron (NM_001370479, intron 1 of 9)	intron (NM_001370479, intron 1 of 9)	1795	NM_001370478	51000		NM_015948	ENSG00000124786	SLC35B3	C6orf196|CGI-19|PAPST2	solute carrier family 35 member B3	protein-coding
229810	chr9	125623801	125624400	+	0	NA	intron (NM_024117, intron 4 of 10)	SVA_F|Retroposon|SVA	83108	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
76421	chr15	74784021	74784730	+	0	NA	intron (NM_001127190, intron 2 of 13)	intron (NM_001127190, intron 2 of 13)	2291	NM_004383	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
70075	chr14	100153401	100153800	+	0	NA	intron (NM_206918, intron 1 of 2)	intron (NM_206918, intron 1 of 2)	6045	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
109356	chr19	622171	622900	+	0	NA	intron (NM_005035, intron 8 of 20)	CpG-12898	11002	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
12907	chr1	110495951	110496550	+	0	NA	Intergenic	Intergenic	-5992	NR_108042	440602		NR_108042	ENSG00000235407	CYMP-AS1	-	CYMP antisense RNA 1	ncRNA
206878	chr7	37657821	37658180	+	0	NA	Intergenic	Intergenic	-25766	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
20697	chr1	200623271	200623530	+	0	NA	Intergenic	MIR|SINE|MIR	-2649	NM_014875	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
81842	chr16	11584811	11585680	+	0	NA	intron (NR_024320, intron 1 of 3)	AluSz6|SINE|Alu	1128	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
189740	chr5	176570071	176570250	+	0	NA	intron (NM_017675, intron 5 of 31)	intron (NM_017675, intron 5 of 31)	20818	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
104576	chr17	81380971	81381130	+	0	NA	intron (NR_164137, intron 1 of 3)	intron (NR_164137, intron 1 of 3)	4075	NR_164138	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
133818	chr2	127830901	127831300	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-19913	NM_001006622	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
186543	chr5	138449451	138450550	+	0	NA	Intergenic	Intergenic	10943	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
13391	chr1	113943951	113944680	+	0	NA	intron (NM_198268, intron 2 of 15)	AluSq|SINE|Alu	-6830	NM_198269	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
35482	chr11	1509221	1509480	+	0	NA	Intergenic	Intergenic	-22571	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
11453	chr1	89855571	89856630	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	34161	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
161899	chr3	45967901	45968100	+	0	NA	exon (NM_024513, exon 8 of 18)	exon (NM_024513, exon 8 of 18)	24536	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
216936	chr8	22863901	22864100	+	0	NA	intron (NM_001363233, intron 3 of 6)	L2c|LINE|L2	-13972	NR_125433	101929237		NR_125433	ENSG00000248738	LOC101929237	-	uncharacterized LOC101929237	ncRNA
47967	chr12	6874651	6875080	+	0	NA	TTS (NR_135083)	TTS (NR_135083)	-1562	NM_032641	84727		NM_032641	ENSG00000111671	SPSB2	GRCC9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding
192222	chr6	18260451	18261200	+	0	NA	intron (NM_003472, intron 2 of 10)	AluJb|SINE|Alu	3705	NM_003472	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
9952	chr1	54736171	54736330	+	0	NA	intron (NM_004623, intron 8 of 9)	(GA)n|Simple_repeat|Simple_repeat	20389	NM_004623	7268		NM_004623	ENSG00000243725	TTC4	CNS1	tetratricopeptide repeat domain 4	protein-coding
165564	chr3	101518201	101519130	+	0	NA	promoter-TSS (NR_036433)	promoter-TSS (NR_036433)	-202	NR_036433	131909		NR_036433		ARB2BP	FAM172B|FAM172BP	ARB2 family member B, pseudogene	pseudo
173771	chr4	17385321	17385650	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-64603	NR_145770	109616994		NR_145770	ENSG00000206780	SNORA75B	-	small nucleolar RNA, H/ACA box 75B	snoRNA
26316	chr10	15094171	15094400	+	0	NA	Intergenic	Intergenic	-2895	NM_001265601	10557		NM_006414	ENSG00000152464	RPP38	-	ribonuclease P/MRP subunit p38	protein-coding
151248	chr21	45300851	45301150	+	0	NA	Intergenic	Intergenic	12948	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
32228	chr10	101825851	101826150	+	0	NA	TTS (NM_014591)	TTS (NM_014591)	6932	NR_045118	100289509		NR_045118		KCNIP2-AS1	-	KCNIP2 antisense RNA 1	ncRNA
166311	chr3	112672321	112673900	+	0	NA	Intergenic	Intergenic	-31967	NM_199511	151887		NM_178274	ENSG00000091986	CCDC80	CL2|DRO1|LINC01279|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
74975	chr15	63848871	63849350	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-15162	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
72418	chr15	31442501	31442950	+	0	NA	Intergenic	Intergenic	115890	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
159273	chr3	12960771	12960930	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	6880	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
66004	chr14	58242401	58242600	+	0	NA	Intergenic	Intergenic	-2305	NR_038123	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
195784	chr6	40587451	40588300	+	0	NA	promoter-TSS (NM_020737)	promoter-TSS (NM_020737)	-511	NM_020737	57497		NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
227920	chr9	94182101	94182300	+	0	NA	intron (NR_160773, intron 2 of 2)	L1MC1|LINE|L1	3366	NR_029481	406886		NR_029481	ENSG00000199133	MIRLET7D	LET7D|MIRNLET7D|hsa-let-7d|let-7d	microRNA let-7d	ncRNA
140356	chr2	232695401	232695880	+	0	NA	Intergenic	L2|LINE|L2	-1691	NM_001103148	26058		NM_015575	ENSG00000204120	GIGYF2	GYF2|PARK11|PERQ2|PERQ3|TNRC15	GRB10 interacting GYF protein 2	protein-coding
126785	chr2	30263971	30265100	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	33001	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
38595	chr11	46281471	46281830	+	0	NA	intron (NM_052854, intron 1 of 11)	intron (NM_052854, intron 1 of 11)	3988	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
145409	chr20	41664751	41664850	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-46423	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
69372	chr14	94024651	94025180	+	0	NA	Intergenic	Intergenic	-1425	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
4218	chr1	19465071	19465500	+	0	NA	intron (NM_001206541, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	19010	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
135280	chr2	159904301	159905650	+	0	NA	promoter-TSS (NM_002349)	promoter-TSS (NM_002349)	-219	NM_001198760	100526664		NM_001198759	ENSG00000248672	LY75-CD302	CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6	LY75-CD302 readthrough	protein-coding
197077	chr6	56359271	56359530	+	0	NA	intron (NM_001318752, intron 1 of 28)	L3|LINE|CR1	34728	NM_001318752	81578		NM_030820	ENSG00000124749	COL21A1	COLA1L|FP633	collagen type XXI alpha 1 chain	protein-coding
219314	chr8	70136951	70137130	+	0	NA	intron (NM_001321713, intron 14 of 21)	intron (NM_001321713, intron 14 of 21)	-65788	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
69901	chr14	99480101	99481930	+	0	NA	promoter-TSS (NM_001099402)	promoter-TSS (NM_001099402)	-156	NM_199123	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
15252	chr1	149622021	149622350	+	0	NA	intron (NR_111950, intron 1 of 8)	Tigger15a|DNA|TcMar-Tigger	15173	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
31283	chr10	92434921	92435230	+	0	NA	Intergenic	AluSg|SINE|Alu	16414	NR_038243	100507674		NR_038243		MARK2P9	-	MARK2 pseudogene 9	pseudo
49818	chr12	31993351	31993530	+	0	NA	TTS (NM_018169)	TTS (NM_018169)	34025	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
123941	chr19	55379121	55379580	+	0	NA	3' UTR (NM_001190764, exon 2 of 2)	3' UTR (NM_001190764, exon 2 of 2)	2524	NM_139172	147744		NM_139172	ENSG00000160472	TMEM190	MDAC1	transmembrane protein 190	protein-coding
43290	chr11	76140051	76140150	+	0	NA	intron (NM_003369, intron 14 of 14)	(CTCT)n|Simple_repeat|Simple_repeat	66402	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
180619	chr5	16615651	16616100	+	0	NA	promoter-TSS (NR_109946)	promoter-TSS (NR_109946)	-51	NR_109946	101929524		NR_109946	ENSG00000246214	RETREG1-AS1	-	RETREG1 antisense RNA 1	ncRNA
224224	chr9	5626671	5627790	+	0	NA	Intergenic	Intergenic	-1877	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
64964	chr14	36320071	36320980	+	0	NA	exon (NM_001144891, exon 1 of 9)	exon (NM_001144891, exon 1 of 9)	112	NM_001308110	51562		NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
142807	chr20	15155951	15156050	+	0	NA	intron (NM_001351661, intron 5 of 17)	intron (NM_001351661, intron 5 of 17)	-40840	NM_001351664	140733		NM_080676	ENSG00000172264	MACROD2	C20orf133|C2orf133	mono-ADP ribosylhydrolase 2	protein-coding
15434	chr1	150284751	150285250	+	0	NA	intron (NM_001300838, intron 5 of 5)	intron (NM_001300838, intron 5 of 5)	2446	NM_001300838	148523		NM_144697	ENSG00000159208	CIART	C1orf51|CHRONO|GM129	circadian associated repressor of transcription	protein-coding
38560	chr11	45928401	45928800	+	0	NA	TTS (NM_001352027)	TTS (NM_001352027)	5944	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
215493	chr7	158586621	158586980	+	0	NA	intron (NM_130843, intron 1 of 21)	CpG	1023	NM_001308267	5799		NM_002847	ENSG00000155093	PTPRN2	IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2	protein tyrosine phosphatase receptor type N2	protein-coding
26123	chr10	13658321	13659100	+	0	NA	intron (NM_018027, intron 21 of 24)	AluSx1|SINE|Alu	48857	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
214095	chr7	143703101	143703780	+	0	NA	exon (NM_001363538, exon 2 of 8)	exon (NM_001363538, exon 2 of 8)	-12406	NM_001130026	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
82301	chr16	15638571	15639730	+	0	NA	exon (NM_014647, exon 2 of 27)	exon (NM_014647, exon 2 of 27)	4004	NM_001184999	9665		NM_014647	ENSG00000166783	MARF1	KIAA0430|LKAP|LMKB|PPP1R34	meiosis regulator and mRNA stability factor 1	protein-coding
70820	chr14	103593201	103594000	+	0	NA	Intergenic	Intergenic	30640	NM_001302652	84334		NM_001302652	ENSG00000256053	COA8	APOP|APOP1|APOPT1|C14orf153|MC4DN17	cytochrome c oxidase assembly factor 8	protein-coding
68047	chr14	75231871	75232030	+	0	NA	Intergenic	AluSx|SINE|Alu	-46878	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
2972	chr1	11952421	11953080	+	0	NA	intron (NM_001316320, intron 6 of 19)	intron (NM_001316320, intron 6 of 19)	18033	NM_001316320	5351		NM_000302	ENSG00000083444	PLOD1	EDS6|EDSKCL1|LH|LH1|LLH|PLOD	procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	protein-coding
82972	chr16	21949701	21950250	+	0	NA	Intergenic	MER4A|LTR|ERV1	-3386	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
78243	chr15	90710621	90711080	+	0	NA	intron (NR_120372, intron 2 of 3)	intron (NR_120372, intron 2 of 3)	6290	NR_120372	101926895		NR_120372	ENSG00000259736	CRTC3-AS1	-	CRTC3 antisense RNA 1	ncRNA
31076	chr10	89029671	89030080	+	0	NA	Intergenic	Intergenic	-33461	NR_039826	100616128		NR_039826	ENSG00000283664	MIR4679-1	-	microRNA 4679-1	ncRNA
113644	chr19	10351821	10352080	+	0	NA	intron (NM_001385198, intron 22 of 23)	AluSg|SINE|Alu	-12326	NM_002162	3385		NM_002162	ENSG00000076662	ICAM3	CD50|CDW50|ICAM-R	intercellular adhesion molecule 3	protein-coding
49111	chr12	14768971	14770500	+	0	NA	TTS (NM_175054)	TTS (NM_175054)	1396	NM_175054	121504		NM_175054	ENSG00000197837	H4C16	H4-16|H4/p|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST4H4	H4 histone 16	protein-coding
30778	chr10	84343901	84344100	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	15411	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
43265	chr11	75576451	75577530	+	0	NA	Intergenic	AluSc|SINE|Alu	-6206	NR_145823	105369391		NR_145823	ENSG00000255326	LOC105369391	-	uncharacterized LOC105369391	ncRNA
34041	chr10	124732521	124733600	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	11318	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
40632	chr11	64716201	64717750	+	0	NA	intron (NM_015080, intron 1 of 22)	intron (NM_015080, intron 1 of 22)	6222	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
136866	chr2	186693921	186694680	+	0	NA	exon (NM_177454, exon 1 of 8)	exon (NM_177454, exon 1 of 8)	240	NM_177454	165215		NM_177454	ENSG00000144369	FAM171B	KIAA1946	family with sequence similarity 171 member B	protein-coding
135334	chr2	160380351	160380650	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	27382	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
26788	chr10	23314801	23315000	+	0	NA	intron (NM_001371909, intron 4 of 15)	intron (NM_001371909, intron 4 of 15)	-29057	NR_155752	105376453		NR_155752	ENSG00000224215	C10orf67-AS1	-	C10orf67 antisense RNA 1	ncRNA
104772	chr17	81707001	81709430	+	0	NA	TTS (NM_002949)	TTS (NM_002949)	-4021	NM_001270953	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
22813	chr1	224625551	224625850	+	0	NA	intron (NM_152495, intron 1 of 5)	intron (NM_152495, intron 1 of 5)	9383	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
192179	chr6	17668721	17668980	+	0	NA	intron (NM_001278209, intron 8 of 22)	AluSx|SINE|Alu	-37280	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
234568	chrX	19747321	19748880	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	51673	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
83997	chr16	29450051	29450600	+	0	NA	TTS (NR_002454)	TTS (NR_002454)	980	NR_002454	606724		NR_002454		LOC606724	-	coronin 1A pseudogene	pseudo
135001	chr2	152851551	152851650	+	0	NA	Intergenic	L1PB3|LINE|L1	132651	NM_001350068	151188		NM_152522	ENSG00000177917	ARL6IP6	AIP-6|AIP6|PFAAP1	ADP ribosylation factor like GTPase 6 interacting protein 6	protein-coding
60064	chr13	33541301	33541500	+	0	NA	intron (NM_001243476, intron 3 of 17)	intron (NM_001243476, intron 3 of 17)	135394	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
98365	chr17	46363471	46363830	+	0	NA	Intergenic	LTR26C|LTR|ERV1	-1853	NM_001330244	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
8341	chr1	40186421	40187300	+	0	NA	intron (NM_012421, intron 1 of 7)	intron (NM_012421, intron 1 of 7)	25473	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
51488	chr12	52090271	52090630	+	0	NA	intron (NR_120438, intron 2 of 2)	L2a|LINE|L2	-3119	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
180787	chr5	32239471	32239830	+	0	NA	intron (NM_001294344, intron 12 of 13)	intron (NM_001294344, intron 12 of 13)	-65331	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
151139	chr21	44904471	44905030	+	0	NA	intron (NM_001127491, intron 4 of 15)	(CA)n|Simple_repeat|Simple_repeat	16149	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
18625	chr1	166083821	166084080	+	0	NA	intron (NR_163271, intron 1 of 2)	intron (NR_163271, intron 1 of 2)	70848	NR_030626	100126349		NR_030626	ENSG00000215952	MIR921	MIRN921|hsa-mir-921	microRNA 921	ncRNA
225960	chr9	41112571	41112950	+	0	NA	intron (NR_147036, intron 2 of 6)	SATR1|Satellite|Satellite	-3830	NR_147037	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
113743	chr19	10491371	10491530	+	0	NA	intron (NM_012289, intron 3 of 5)	intron (NM_012289, intron 3 of 5)	11321	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
63145	chr13	113586001	113586300	+	0	NA	intron (NR_026580, intron 2 of 10)	intron (NR_026580, intron 2 of 10)	1397	NM_007111	7027		NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
223191	chr8	143568181	143570180	+	0	NA	intron (NM_001100878, intron 9 of 13).2	CpG	3592	NM_001100878	642475		NM_001100878	ENSG00000204839	MROH6	C8orf73	maestro heat like repeat family member 6	protein-coding
211920	chr7	112454201	112454630	+	0	NA	intron (NM_001197079, intron 1 of 11)	AluSq2|SINE|Alu	2357	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
88719	chr16	85972721	85972980	+	0	NA	Intergenic	CpG	54503	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
150806	chr21	43937271	43937500	+	0	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	11987	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
30941	chr10	87407671	87408180	+	0	NA	promoter-TSS (NR_046091)	promoter-TSS (NR_046091)	-225	NR_046091	728218		NR_046091	ENSG00000228055	FAM245A	LINC00864	family with sequence similarity 245 member A	ncRNA
167524	chr3	129281451	129282050	+	0	NA	intron (NM_001370345, intron 2 of 5)	AluSz|SINE|Alu	2756	NM_001370343	56941		NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine binding, ES cell specific	protein-coding
124027	chr19	55484551	55485850	+	0	NA	promoter-TSS (NM_020378)	promoter-TSS (NM_020378)	12	NM_020378	57106		NM_020378	ENSG00000090971	NAT14	KLP1	N-acetyltransferase 14 (putative)	protein-coding
98390	chr17	46556851	46557200	+	0	NA	3' UTR (NM_001113738, exon 4 of 4).4	3' UTR (NM_001113738, exon 4 of 4).4	22666	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
209165	chr7	75240821	75241080	+	0	NA	intron (NM_001382495, intron 1 of 8).2	AluJr|SINE|Alu	-3245	NR_002206	2970		NR_002206	ENSG00000290871	GTF2IP1	WBSCR7	general transcription factor IIi pseudogene 1	pseudo
42103	chr11	67583321	67585350	+	0	NA	intron (NM_000852, intron 2 of 6)	CpG-4572	523	NM_000852	2950		NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
58304	chr12	130871401	130872930	+	0	NA	promoter-TSS (NM_006325)	promoter-TSS (NM_006325)	99	NM_006325	5901		NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
234596	chrX	19793021	19793280	+	0	NA	intron (NM_001353892, intron 2 of 17)	AluJb|SINE|Alu	6623	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
13699	chr1	116757021	116757750	+	0	NA	intron (NM_001328609, intron 2 of 4)	intron (NM_001328609, intron 2 of 4)	2955	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
190175	chr5	178155871	178156550	+	0	NA	Intergenic	AluYk3|SINE|Alu	-2250	NM_001034833	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
150587	chr21	43275621	43276280	+	0	NA	Intergenic	Intergenic	56089	NR_103713	100126693		NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
185925	chr5	132870471	132870900	+	0	NA	Intergenic	Intergenic	-2983	NM_052971	116842		NM_052971	ENSG00000164406	LEAP2	LEAP-2	liver enriched antimicrobial peptide 2	protein-coding
136898	chr2	189444071	189444750	+	0	NA	intron (NM_032168, intron 1 of 20)	intron (NM_032168, intron 1 of 20)	2936	NM_032168	84128		NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
9197	chr1	45614401	45614800	+	0	NA	intron (NM_001195193, intron 7 of 12)	AluSg|SINE|Alu	9454	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
161877	chr3	45920701	45921250	+	0	NA	3' UTR (NM_024513, exon 18 of 18)	3' UTR (NM_024513, exon 18 of 18)	-5251	NM_001276379	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
206600	chr7	35804051	35804650	+	0	NA	intron (NM_001788, intron 1 of 12)	intron (NM_001788, intron 1 of 12)	3131	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
16833	chr1	155660071	155660550	+	0	NA	exon (NM_139118, exon 11 of 11)	exon (NM_139118, exon 11 of 11)	18945	NR_132762	106633810		NR_132762		SCARNA26A	-	small Cajal body-specific RNA 26A	ncRNA
3120	chr1	12372271	12372430	+	0	NA	intron (NM_018156, intron 53 of 68)	AluJb|SINE|Alu	-134896	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
47749	chr12	6531951	6533300	+	0	NA	TTS (NM_014865)	TTS (NM_014865)	-1892	NR_152150	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
67658	chr14	73103651	73104100	+	0	NA	intron (NM_021239, intron 10 of 18)	intron (NM_021239, intron 10 of 18)	-32632	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
119284	chr19	39710401	39710800	+	0	NA	Intergenic	Intergenic	6119	NM_020129	56891		NM_020129	ENSG00000006659	LGALS14	CLC2|PPL13	galectin 14	protein-coding
235310	chrX	42778171	42778330	+	0	NA	promoter-TSS (NM_025210)	promoter-TSS (NM_025210)	-87	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
106106	chr18	9161321	9161580	+	0	NA	intron (NM_001204056, intron 1 of 11)	AluY|SINE|Alu	23887	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
41135	chr11	65579951	65580730	+	0	NA	exon (NM_001351087, exon 6 of 18)	exon (NM_001351087, exon 6 of 18)	4287	NM_001099409	254102		NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1 like 1	protein-coding
89313	chr16	88723571	88723730	+	0	NA	intron (NM_001142864, intron 31 of 50)	intron (NM_001142864, intron 31 of 50)	-7313	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
213629	chr7	139630351	139630850	+	0	NA	intron (NM_022740, intron 4 of 14)	AluSz|SINE|Alu	106915	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
120823	chr19	45490271	45491730	+	0	NA	intron (NM_206900, intron 4 of 9)	AluSc8|SINE|Alu	2253	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
62913	chr13	110944371	110944530	+	0	NA	Intergenic	Intergenic	-21577	NR_126378	104355135		NR_126378		LINC00431	-	long intergenic non-protein coding RNA 431	ncRNA
218538	chr8	53879421	53881080	+	0	NA	promoter-TSS (NM_003702)	promoter-TSS (NM_003702)	-622	NR_104579	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
64328	chr14	23746251	23746350	+	0	NA	Intergenic	Intergenic	109936	NM_005794	10202		NM_005794	ENSG00000100867	DHRS2	HEP27|SDR25C1	dehydrogenase/reductase 2	protein-coding
206950	chr7	38248771	38249200	+	0	NA	Intergenic	MIRb|SINE|MIR	24662	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
222456	chr8	139461901	139462130	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	241108	NR_104210	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
233058	chr9	137073321	137074030	+	0	NA	Intergenic	Intergenic	-3118	NM_178448	89958		NM_178448	ENSG00000186193	SAPCD2	C9orf140|p42.3	suppressor APC domain containing 2	protein-coding
163391	chr3	50502071	50502430	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	1384	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
124249	chr19	57527021	57528100	+	0	NA	5' UTR (NM_001199295, exon 1 of 4)	5' UTR (NM_001199295, exon 1 of 4)	204	NM_001199295	256051		NM_153263	ENSG00000121406	ZNF549	-	zinc finger protein 549	protein-coding
86244	chr16	58238071	58238430	+	0	NA	Intergenic	L1ME1|LINE|L1	-11686	NM_014157	29070		NM_014157	ENSG00000103021	CFAP263	CCDC113|HSPC065	cilia and flagella associated protein 263	protein-coding
94153	chr17	28353251	28353550	+	0	NA	intron (NM_001290145, intron 4 of 10)	AluSx1|SINE|Alu	4127	NM_015584	26073		NM_015584	ENSG00000004142	POLDIP2	PDIP38|POLD4|p38	DNA polymerase delta interacting protein 2	protein-coding
46541	chr11	128471101	128471800	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	50860	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
129050	chr2	65062651	65062980	+	0	NA	intron (NM_015147, intron 1 of 6)	AluSz6|SINE|Alu	6399	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
209504	chr7	76956771	76956930	+	0	NA	Intergenic	Intergenic	-23972	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
66192	chr14	60979521	60979780	+	0	NA	exon (NM_020810, exon 2 of 5)	exon (NM_020810, exon 2 of 5)	1429	NM_020810	57570		NM_020810	ENSG00000126814	TRMT5	COXPD26|KIAA1393|PNSED|TRM5	tRNA methyltransferase 5	protein-coding
181804	chr5	52693271	52693530	+	0	NA	Intergenic	MIR|SINE|MIR	-94516	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
29460	chr10	70480171	70480950	+	0	NA	intron (NM_014431, intron 1 of 19)	intron (NM_014431, intron 1 of 19)	1793	NM_014431	27143		NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	phosphatase domain containing paladin 1	protein-coding
225648	chr9	36392371	36392730	+	0	NA	intron (NM_194330, intron 1 of 11)	AluJr4|SINE|Alu	7719	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
65300	chr14	50079521	50079780	+	0	NA	intron (NR_131171, intron 2 of 8)	L1PA5|LINE|L1	25393	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
107790	chr18	51150251	51150550	+	0	NA	Intergenic	Intergenic	47281	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
147264	chr20	57440551	57441050	+	0	NA	Intergenic	Intergenic	-47744	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
142586	chr20	5544321	5544780	+	0	NA	3' UTR (NM_019593, exon 20 of 20)	3' UTR (NM_019593, exon 20 of 20)	-34548	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
119330	chr19	39943751	39944700	+	0	NA	Intergenic	PRIMA41-int|LTR|ERV1	-9599	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
144305	chr20	34719621	34720280	+	0	NA	intron (NM_001242539, intron 11 of 11)	intron (NM_001242539, intron 11 of 11)	15231	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
182615	chr5	66171221	66172400	+	0	NA	intron (NM_139168, intron 10 of 12)	MIRb|SINE|MIR	26975	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
17163	chr1	156210171	156210580	+	0	NA	exon (NM_001377388, exon 5 of 5)	exon (NM_001377388, exon 5 of 5)	-2613	NM_001199663	100527963		NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF-1|PMF1	PMF1-BGLAP readthrough	protein-coding
29108	chr10	68337001	68337750	+	0	NA	intron (NM_001322444, intron 2 of 7)	intron (NM_001322444, intron 2 of 7)	-4447	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
110481	chr19	2029671	2029830	+	0	NA	Intergenic	AluJo|SINE|Alu	-14036	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
33529	chr10	119232451	119232980	+	0	NA	intron (NM_005308, intron 1 of 15)	THE1B|LTR|ERVL-MaLR	25144	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
116269	chr19	17686601	17687450	+	0	NA	intron (NM_001080421, intron 1 of 41)	intron (NM_001080421, intron 1 of 41)	1174	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
23775	chr1	233261901	233262100	+	0	NA	intron (NM_014801, intron 3 of 33)	intron (NM_014801, intron 3 of 33)	33725	NM_001328607	80003		NM_014801	ENSG00000135749	PCNX2	PCNXL2	pecanex 2	protein-coding
107461	chr18	46672171	46672730	+	0	NA	3' UTR (NM_001307987, exon 6 of 6)	3' UTR (NM_001307987, exon 6 of 6)	-15230	NM_144612	125336		NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology PLAT domains 1	protein-coding
29495	chr10	70594321	70595150	+	0	NA	Intergenic	AluSz|SINE|Alu	8006	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
29801	chr10	72294921	72295180	+	0	NA	Intergenic	AluSz6|SINE|Alu	21126	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
219087	chr8	65838721	65839200	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	3104	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
182488	chr5	62460501	62460800	+	0	NA	intron (NM_016338, intron 5 of 29)	intron (NM_016338, intron 5 of 29)	41766	NM_001134779	51194		NM_016338	ENSG00000086200	IPO11	RanBP11	importin 11	protein-coding
198345	chr6	104860871	104861180	+	0	NA	Intergenic	Intergenic	-1106	NM_001321080	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
187300	chr5	141602801	141603330	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	15935	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
105233	chr17	82379701	82380130	+	0	NA	Intergenic	Intergenic	8150	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
18272	chr1	161110851	161110950	+	0	NA	intron (NM_012394, intron 1 of 3)	AluSc8|SINE|Alu	7137	NM_012394	5202		NM_012394	ENSG00000143256	PFDN2	PFD2	prefoldin subunit 2	protein-coding
37507	chr11	18455671	18456050	+	0	NA	promoter-TSS (NM_001144071)	promoter-TSS (NM_001144071)	4	NM_144972	160287		NM_144972	ENSG00000166800	LDHAL6A	LDH6A	lactate dehydrogenase A like 6A	protein-coding
23614	chr1	230176821	230177150	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	109747	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
198870	chr6	109446471	109447000	+	0	NA	exon (NM_001159291, exon 17 of 24)	exon (NM_001159291, exon 17 of 24)	-5564	NM_001111298	285755		NM_173672	ENSG00000185250	PPIL6	PPIase|RSPH12|bA425D10.6|dJ919F19.1	peptidylprolyl isomerase like 6	protein-coding
24864	chr10	662721	662980	+	0	NA	intron (NM_014974, intron 1 of 36)	Tigger13a|DNA|TcMar-Tigger	12815	NM_001355390	414235		NM_001012714	ENSG00000180525	DIP2C-AS1	C10orf108|PRR26	DIP2C antisense RNA 1	ncRNA
196556	chr6	44076801	44078000	+	0	NA	Intergenic	Intergenic	-2748	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
22449	chr1	220878951	220879400	+	0	NA	promoter-TSS (NM_021958)	promoter-TSS (NM_021958)	-268	NM_021958	3142		NM_021958	ENSG00000136630	HLX	HB24|HLX1	H2.0 like homeobox	protein-coding
75743	chr15	68283251	68283880	+	0	NA	intron (NM_015322, intron 1 of 1)	AluJb|SINE|Alu	5820	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
93603	chr17	19138401	19138980	+	0	NA	intron (NM_001353418, intron 3 of 3)	intron (NM_001353418, intron 3 of 3)	11101	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
138925	chr2	218219921	218220430	+	0	NA	intron (NM_152862, intron 2 of 10)	intron (NM_152862, intron 2 of 10)	2778	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
114489	chr19	12756171	12756530	+	0	NA	intron (NM_017682, intron 9 of 9)	intron (NM_017682, intron 9 of 9)	4559	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
147786	chr20	62616851	62617350	+	0	NA	Intergenic	Intergenic	-25403	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
35980	chr11	2861821	2862230	+	0	NA	promoter-TSS (NR_130721)	promoter-TSS (NR_130721)	-456	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
178671	chr4	152509621	152510030	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	-20409	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
102590	chr17	75895801	75897400	+	0	NA	exon (NM_001256124, exon 1 of 5)	exon (NM_001256124, exon 1 of 5)	351	NM_001256124	201292		NM_173547	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
212091	chr7	115477101	115477700	+	0	NA	Intergenic	Intergenic	104041	NR_145801	109623459		NR_145801	ENSG00000202377	SNORA25B	-	small nucleolar RNA, H/ACA box 25B	snoRNA
139235	chr2	219309301	219309680	+	0	NA	promoter-TSS (NM_001199764)	promoter-TSS (NM_001199764)	-89	NM_001199763	5798		NM_002846	ENSG00000054356	PTPRN	IA-2|IA-2/PTP|IA2|ICA512|R-PTP-N	protein tyrosine phosphatase receptor type N	protein-coding
100416	chr17	60577071	60577230	+	0	NA	intron (NR_126009, intron 2 of 3)	L1M4|LINE|L1	12604	NR_126009	388406		NR_126009	ENSG00000267772	LINC01999	-	long intergenic non-protein coding RNA 1999	ncRNA
151267	chr21	45403921	45406350	+	0	NA	promoter-TSS (NM_001379500)	promoter-TSS (NM_001379500)	-30	NM_001379500	80781		NM_030582	ENSG00000182871	COL18A1	GLCC|KNO|KNO1|KS	collagen type XVIII alpha 1 chain	protein-coding
163436	chr3	50586151	50586850	+	0	NA	3' UTR (NM_001377425, exon 11 of 11)	3' UTR (NM_001377425, exon 11 of 11)	-15473	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
19700	chr1	181063901	181064100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-24700	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
181037	chr5	35902201	35902600	+	0	NA	Intergenic	Intergenic	36222	NM_001042625	133690		NM_144647	ENSG00000152611	CAPSL	-	calcyphosine like	protein-coding
18752	chr1	167493901	167494500	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	24329	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
36842	chr11	10300171	10300330	+	0	NA	Intergenic	L2a|LINE|L2	-4823	NM_001124	133		NM_001124	ENSG00000148926	ADM	AM|PAMP	adrenomedullin	protein-coding
129444	chr2	69498671	69498830	+	0	NA	intron (NM_001371575, intron 16 of 20)	intron (NM_001371575, intron 16 of 20)	21421	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
98020	chr17	45394871	45395680	+	0	NA	non-coding (NR_169610, exon 18 of 18)	non-coding (NR_169610, exon 18 of 18)	15111	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
192146	chr6	16849371	16849930	+	0	NA	Intergenic	Intergenic	-88160	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
23255	chr1	227844371	227845330	+	0	NA	intron (NM_001374657, intron 3 of 3)	intron (NM_001374657, intron 3 of 3)	29133	NM_183062	339501		NM_183062	ENSG00000185888	PRSS38	MPN2	serine protease 38	protein-coding
142978	chr20	20019071	20019430	+	0	NA	intron (NM_181527, intron 1 of 5)	intron (NM_181527, intron 1 of 5)	1455	NM_181527	51126		NM_016100	ENSG00000173418	NAA20	MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein-coding
6604	chr1	28784921	28785780	+	0	NA	Intergenic	Intergenic	-26820	NM_000911	4985		NM_000911	ENSG00000116329	OPRD1	DOP|DOR|DOR1|OPRD	opioid receptor delta 1	protein-coding
166254	chr3	112357121	112357380	+	0	NA	intron (NM_001318826, intron 5 of 5)	AluY|SINE|Alu	24094	NM_005944	4345		NM_005944	ENSG00000091972	CD200	MOX1|MOX2|MRC|OX-2	CD200 molecule	protein-coding
41514	chr11	66262371	66262530	+	0	NA	intron (NM_001134774, intron 3 of 14)	MIR3|SINE|MIR	4747	NM_001134774	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
14287	chr1	143784051	143785200	+	0	NA	Intergenic	Intergenic	-7870	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
215215	chr7	155999151	155999250	+	0	NA	Intergenic	Intergenic	36643	NR_168379	389602		NM_001291913	ENSG00000204876	LOC389602	-	uncharacterized LOC389602	ncRNA
195032	chr6	35478521	35479150	+	0	NA	intron (NM_003214, intron 5 of 12)	intron (NM_003214, intron 5 of 12)	8327	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
161371	chr3	40580501	40580800	+	0	NA	Intergenic	Intergenic	55690	NM_001098414	285268		NM_198484	ENSG00000172888	ZNF621	-	zinc finger protein 621	protein-coding
71036	chr14	104782071	104782650	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	11241	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
85219	chr16	47493871	47494230	+	0	NA	intron (NM_001031835, intron 2 of 31)	ERV24_Prim-int|LTR|ERV1	32719	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
70738	chr14	103369351	103369450	+	0	NA	Intergenic	AluSx4|SINE|Alu	-15964	NM_001128919	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
81211	chr16	4505021	4505980	+	0	NA	exon (NM_001286267, exon 3 of 7)	exon (NM_001286267, exon 3 of 7)	9642	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
193708	chr6	31159301	31160280	+	0	NA	intron (NM_001077511, intron 2 of 3).7	intron (NM_001077511, intron 2 of 3).7	1201	NM_001318908	6941		NM_007109	ENSG00000137310	TCF19	SC1|TCF-19	transcription factor 19	protein-coding
149416	chr21	31190971	31191730	+	0	NA	intron (NM_001353694, intron 13 of 27)	AluSc|SINE|Alu	-30410	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
52890	chr12	57208101	57208430	+	0	NA	intron (NM_002332, intron 77 of 88)	intron (NM_002332, intron 77 of 88)	-8529	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
119766	chr19	41293751	41295000	+	0	NA	exon (NM_007040, exon 9 of 15)	exon (NM_007040, exon 9 of 15)	-15797	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
120241	chr19	42395321	42395700	+	0	NA	Intergenic	Intergenic	-1618	NR_126041	101930071		NR_126041	ENSG00000213904	LOC101930071	-	uncharacterized LOC101930071	ncRNA
205803	chr7	24285201	24285550	+	0	NA	exon (NM_000905, exon 2 of 4)	exon (NM_000905, exon 2 of 4)	1185	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
20898	chr1	202157451	202158180	+	0	NA	exon (NM_001199797, exon 4 of 10)	exon (NM_001199797, exon 4 of 10)	1639	NM_001364878	5778		NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase non-receptor type 7	protein-coding
208888	chr7	73839921	73840500	+	0	NA	intron (NM_152559, intron 4 of 5)	intron (NM_152559, intron 4 of 5)	2306	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
128775	chr2	62216571	62216930	+	0	NA	intron (NM_001319075, intron 1 of 1)	intron (NM_001319075, intron 1 of 1)	1229	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
163897	chr3	52520771	52521130	+	0	NA	exon (NM_015136, exon 55 of 69)	exon (NM_015136, exon 55 of 69)	12907	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
38829	chr11	47311371	47312000	+	0	NA	intron (NM_001376633, intron 27 of 32)	intron (NM_001376633, intron 27 of 32)	-39575	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
54580	chr12	92401221	92401480	+	0	NA	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	-20181	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
189518	chr5	173614801	173615000	+	0	NA	intron (NR_164703, intron 1 of 4)	MER44B|DNA|TcMar-Tigger	1750	NR_164700	91272		NM_138369	ENSG00000145919	BOD1	FAM44B	biorientation of chromosomes in cell division 1	protein-coding
52865	chr12	57143201	57143630	+	0	NA	intron (NM_002332, intron 3 of 88)	intron (NM_002332, intron 3 of 88)	4204	NR_131938	105751187		NR_131938	ENSG00000259125	LRP1-AS	-	LRP1 antisense RNA	ncRNA
201818	chr6	150019951	150020900	+	0	NA	intron (NM_130900, intron 3 of 4)	intron (NM_130900, intron 3 of 4)	5107	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
70569	chr14	102597351	102597680	+	0	NA	intron (NM_015156, intron 2 of 11)	AluSx|SINE|Alu	4866	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
20191	chr1	193069701	193070540	+	0	NA	intron (NM_001042370, intron 2 of 9)	intron (NM_001042370, intron 2 of 9)	-10044	NM_001350852	51377		NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
132403	chr2	105794871	105795050	+	0	NA	intron (NM_001004722, intron 1 of 3)	L1MC5|LINE|L1	49897	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
211452	chr7	105084351	105084900	+	0	NA	intron (NM_182931, intron 13 of 26)	AluSx1|SINE|Alu	70420	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
144667	chr20	36214751	36214930	+	0	NA	intron (NM_001258330, intron 16 of 20)	intron (NM_001258330, intron 16 of 20)	-21577	NM_015511	25980		NM_015511	ENSG00000131043	AAR2	C20orf4|CGI-23	AAR2 splicing factor	protein-coding
119798	chr19	41330221	41330480	+	0	NA	TTS (NM_000660)	TTS (NM_000660)	19873	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
159718	chr3	15741951	15742250	+	0	NA	intron (NM_001349280, intron 3 of 26)	SVA_D|Retroposon|SVA	14447	NM_001195099	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
9368	chr1	47229521	47230080	+	0	NA	intron (NM_003189, intron 1 of 5)	intron (NM_003189, intron 1 of 5)	1915	NM_001287347	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
107338	chr18	45774021	45774550	+	0	NA	Intergenic	Intergenic	47332	NM_001146037	6563		NM_015865	ENSG00000141469	SLC14A1	HUT11|HUT11A|HsT1341|JK|Jk(a)|Jk(b)|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 member 1 (Kidd blood group)	protein-coding
235163	chrX	41125651	41125750	+	0	NA	intron (NM_001039590, intron 2 of 44)	L1M5|LINE|L1	40255	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
161908	chr3	45980271	45980850	+	0	NA	intron (NM_024513, intron 3 of 17)	intron (NM_024513, intron 3 of 17)	15264	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
33401	chr10	118340571	118341000	+	0	NA	intron (NM_001134672, intron 1 of 7)	intron (NM_001134672, intron 1 of 7)	1539	NM_001134672	63877		NM_022063	ENSG00000165669	FAM204A	C10orf84|bA319I23.1	family with sequence similarity 204 member A	protein-coding
33895	chr10	124471951	124472500	+	0	NA	intron (NM_001167880, intron 1 of 5)	AluSx|SINE|Alu	10402	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
16180	chr1	153794221	153795030	+	0	NA	intron (NR_126565, intron 1 of 2)	intron (NR_126565, intron 1 of 2)	678	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
188280	chr5	151126151	151127280	+	0	NA	intron (NM_001193544, intron 12 of 24)	AluSq2|SINE|Alu	14969	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
29286	chr10	69228521	69230030	+	0	NA	intron (NM_025130, intron 2 of 17)	intron (NM_025130, intron 2 of 17)	3215	NR_120648	101928994		NR_120648	ENSG00000229261	LOC101928994	-	uncharacterized LOC101928994	ncRNA
229429	chr9	121358721	121360130	+	0	NA	intron (NM_001270526, intron 1 of 6)	intron (NM_001270526, intron 1 of 6)	10825	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
50453	chr12	47738001	47738200	+	0	NA	intron (NM_001098532, intron 25 of 26)	intron (NM_001098532, intron 25 of 26)	-12610	NM_001172439	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
153028	chr22	23240751	23241700	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-21542	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
221171	chr8	120124271	120124500	+	0	NA	promoter-TSS (NM_021110)	promoter-TSS (NM_021110)	-717	NM_001384947	7373		NM_021110	ENSG00000187955	COL14A1	UND	collagen type XIV alpha 1 chain	protein-coding
116137	chr19	17346001	17346980	+	0	NA	Intergenic	Intergenic	8937	NM_001128855	84705		NM_032620	ENSG00000130299	GTPBP3	COXPD23|GTPBG3|MSS1|MTGP1|THDF1	GTP binding protein 3, mitochondrial	protein-coding
181210	chr5	39163821	39164500	+	0	NA	intron (NM_199335, intron 2 of 17)	MER102a|DNA|hAT-Charlie	55403	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
29073	chr10	67896121	67897550	+	0	NA	intron (NM_001142498, intron 3 of 7)	MER20|DNA|hAT-Charlie	5433	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
206422	chr7	32540301	32540780	+	0	NA	intron (NM_015060, intron 1 of 15)	MER57E2|LTR|ERV1	45051	NM_015060	23080		NM_015060	ENSG00000105778	AVL9	KIAA0241	AVL9 cell migration associated	protein-coding
162724	chr3	49015401	49015600	+	0	NA	TTS (NM_018114)	TTS (NM_018114)	3080	NM_001009996	55152		NM_018114	ENSG00000178149	DALRD3	DEE86|EIEE86	DALR anticodon binding domain containing 3	protein-coding
33860	chr10	124396851	124396950	+	0	NA	TTS (NM_000274)	TTS (NM_000274)	22023	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
168455	chr3	142995001	142995200	+	0	NA	intron (NR_125393, intron 3 of 4)	MLT1D|LTR|ERVL-MaLR	6367	NR_034032	100289361		NR_034032	ENSG00000268129	LOC100289361	-	uncharacterized LOC100289361	ncRNA
216705	chr8	22234271	22234630	+	0	NA	Intergenic	Intergenic	-2098	NM_001363312	9796		NM_014759	ENSG00000168490	PHYHIP	DYRK1AP3|PAHX-AP|PAHXAP1	phytanoyl-CoA 2-hydroxylase interacting protein	protein-coding
161658	chr3	43327301	43327900	+	0	NA	intron (NM_017719, intron 3 of 6)	intron (NM_017719, intron 3 of 6)	24362	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
34610	chr10	133273521	133273780	+	0	NA	intron (NM_001109, intron 5 of 22)	intron (NM_001109, intron 5 of 22)	3218	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
165913	chr3	106998921	106999480	+	0	NA	Intergenic	LTR12|LTR|ERV1	241438	NR_028303	100302640		NR_028303		LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
92804	chr17	16006151	16006550	+	0	NA	intron (NM_017775, intron 6 of 9)	AluSq2|SINE|Alu	6526	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
227627	chr9	92807271	92809930	+	0	NA	promoter-TSS (NR_136301)	promoter-TSS (NR_136301)	-513	NR_136301	101929748		NR_136301	ENSG00000288062	LOC101929748	-	uncharacterized LOC101929748	ncRNA
197226	chr6	68035851	68036050	+	0	NA	Intergenic	AluYe5|SINE|Alu	-19401	NR_125869	102723883		NR_125869	ENSG00000223504	LOC102723883	-	uncharacterized LOC102723883	ncRNA
60998	chr13	47774171	47774400	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	158337	NR_047492	100861549		NR_047492	ENSG00000260388	LINC00562	-	long intergenic non-protein coding RNA 562	ncRNA
165282	chr3	75658551	75658850	+	0	NA	Intergenic	CpG	-5491	NM_001124759	100288801		NM_001124759	ENSG00000172969	FRG2C	-	FSHD region gene 2 family member C	protein-coding
40415	chr11	64152721	64153780	+	0	NA	intron (NM_014067, intron 1 of 10)	intron (NM_014067, intron 1 of 10)	12863	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
124276	chr19	57811671	57812650	+	0	NA	intron (NM_024762, intron 2 of 2)	AluJb|SINE|Alu	2753	NM_024762	79818		NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
157488	chr22	45315521	45316230	+	0	NA	intron (NM_001349915, intron 1 of 7)	intron (NM_001349915, intron 1 of 7)	-2568	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
99282	chr17	49756601	49757850	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	6906	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
84638	chr16	30713421	30713680	+	0	NA	exon (NM_006662, exon 16 of 34)	exon (NM_006662, exon 16 of 34)	3013	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
188334	chr5	151243971	151244550	+	0	NA	Intergenic	Intergenic	-8925	NM_000405	2760		NM_000405	ENSG00000196743	GM2A	GM2-AP|GM2AP|SAP-3	ganglioside GM2 activator	protein-coding
15772	chr1	151170521	151170980	+	0	NA	TTS (NM_024041)	TTS (NM_024041)	4606	NR_037937	79005		NM_024041	ENSG00000163156	SCNM1	OFD19	sodium channel modifier 1	protein-coding
152300	chr22	20322371	20322530	+	0	NA	Intergenic	Intergenic	-2390	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
39381	chr11	59809921	59811030	+	0	NA	intron (NM_017840, intron 1 of 3)	intron (NM_017840, intron 1 of 3)	303	NM_017840	54948		NM_017840	ENSG00000166902	MRPL16	L16mt|MRP-L16|PNAS-111|uL16m	mitochondrial ribosomal protein L16	protein-coding
188001	chr5	149538671	149538830	+	0	NA	intron (NM_001892, intron 2 of 9)	AluSp|SINE|Alu	11615	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
49450	chr12	24948871	24949300	+	0	NA	promoter-TSS (NM_005504)	promoter-TSS (NM_005504)	16	NM_005504	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
115385	chr19	15254871	15255230	+	0	NA	intron (NM_001379291, intron 10 of 19)	intron (NM_001379291, intron 10 of 19)	-22003	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
8026	chr1	38043051	38043750	+	0	NA	TTS (NM_002699)	TTS (NM_002699)	3393	NM_002699	5453		NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
89235	chr16	88636801	88637900	+	0	NA	Intergenic	(TCACACC)n|Simple_repeat|Simple_repeat	-1222	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
48402	chr12	9653121	9653600	+	0	NA	intron (NR_046444, intron 1 of 4)	L1ME1|LINE|L1	5313	NR_002814	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
30258	chr10	75118201	75118400	+	0	NA	intron (NM_144660, intron 1 of 4)	intron (NM_144660, intron 1 of 4)	6644	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
178358	chr4	146177071	146177450	+	0	NA	intron (NM_007080, intron 1 of 3)	intron (NM_007080, intron 1 of 3)	1542	NM_007080	11157		NM_007080	ENSG00000164167	LSM6	YDR378C	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
198521	chr6	106526851	106527450	+	0	NA	intron (NM_001371242, intron 6 of 21)	Tigger14a|DNA|TcMar-Tigger	15295	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
117695	chr19	28499251	28499550	+	0	NA	intron (NR_110759, intron 5 of 9)	intron (NR_110759, intron 5 of 9)	-107288	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
142034	chr20	1675351	1676150	+	0	NA	Intergenic	MER75B|DNA|PiggyBac	-17971	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
157615	chr22	46051671	46051830	+	0	NA	non-coding (NR_165243, exon 2 of 2)	non-coding (NR_165243, exon 2 of 2)	-2096	NR_027034	150381		NR_027034		PRR34-AS1	-	PRR34 antisense RNA 1	ncRNA
7551	chr1	35028901	35029300	+	0	NA	intron (NM_007167, intron 2 of 15)	AluSq2|SINE|Alu	2845	NM_007167	9204		NM_007167	ENSG00000163867	ZMYM6	Buster2|MYM|ZBED7|ZNF198L4|ZNF258	zinc finger MYM-type containing 6	protein-coding
184611	chr5	103475671	103475900	+	0	NA	Intergenic	Intergenic	66200	NR_104670	102467212		NR_104670	ENSG00000248757	LINC02115	-	long intergenic non-protein coding RNA 2115	ncRNA
142301	chr20	3323471	3323630	+	0	NA	intron (NM_001009984, intron 14 of 36)	AluSz6|SINE|Alu	84112	NM_001009984	25943		NM_001009984	ENSG00000088854	DNAAF9	C20orf194	dynein axonemal assembly factor 9	protein-coding
3231	chr1	13780371	13780900	+	0	NA	exon (NM_012231, exon 8 of 10)	exon (NM_012231, exon 8 of 10)	31220	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
44854	chr11	114158801	114159200	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	95789	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
125112	chr2	9769301	9769800	+	0	NA	Intergenic	Intergenic	-73892	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
162623	chr3	48715371	48715900	+	0	NA	intron (NM_001190316, intron 1 of 2)	(AACA)n|Simple_repeat|Simple_repeat	1586	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
93069	chr17	17506101	17506300	+	0	NA	intron (NM_148172, intron 6 of 6)	intron (NM_148172, intron 6 of 6)	-9805	NM_001199989	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
177993	chr4	139266421	139267450	+	0	NA	exon (NM_032623, exon 4 of 4)	exon (NM_032623, exon 4 of 4)	13290	NM_032623	84709		NM_032623	ENSG00000137463	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria localized glutamic acid rich protein	protein-coding
64098	chr14	22712701	22713800	+	0	NA	Intergenic	AluY|SINE|Alu	-53438	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
42078	chr11	67495371	67495880	+	0	NA	intron (NM_001130848, intron 15 of 23)	intron (NM_001130848, intron 15 of 23)	5380	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
12977	chr1	110897601	110898330	+	0	NA	intron (NM_001040033, intron 8 of 8)	MIR|SINE|MIR	24817	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
184259	chr5	96711421	96711680	+	0	NA	intron (NM_173060, intron 1 of 28)	MIRb|SINE|MIR	8890	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
96911	chr17	42136301	42136500	+	0	NA	intron (NM_001252039, intron 1 of 6)	intron (NM_001252039, intron 1 of 6)	13596	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
70005	chr14	100070191	100070930	+	0	NA	intron (NM_016337, intron 1 of 13)	intron (NM_016337, intron 1 of 13)	5138	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
89153	chr16	88526051	88526580	+	0	NA	intron (NR_148997, intron 2 of 3)	intron (NR_148997, intron 2 of 3)	4738	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
36539	chr11	6601201	6601400	+	0	NA	exon (NM_015324, exon 3 of 7)	exon (NM_015324, exon 3 of 7)	2316	NM_015324	23378		NM_015324	ENSG00000132275	RRP8	KIAA0409|NML	ribosomal RNA processing 8	protein-coding
127396	chr2	41872671	41872830	+	0	NA	Intergenic	Intergenic	-4805	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
183739	chr5	81284851	81285100	+	0	NA	intron (NR_034122, intron 1 of 3)	MER58B|DNA|hAT-Charlie	16594	NR_034122	100131067		NR_034121	ENSG00000247572	CKMT2-AS1	-	CKMT2 antisense RNA 1	ncRNA
8675	chr1	41901501	41902100	+	0	NA	intron (NR_038260, intron 1 of 2)	L2a|LINE|L2	17122	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
223820	chr8	144850551	144851480	+	0	NA	exon (NM_014066, exon 2 of 2)	exon (NM_014066, exon 2 of 2)	2033	NM_001081004	28991		NM_014066	ENSG00000170619	COMMD5	HCARG|HT002	COMM domain containing 5	protein-coding
115157	chr19	14412351	14414100	+	0	NA	intron (NR_046366, intron 1 of 9)	intron (NR_046366, intron 1 of 9)	6116	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
36768	chr11	9392571	9392730	+	0	NA	intron (NM_006391, intron 1 of 24)	intron (NM_006391, intron 1 of 24)	7998	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
225180	chr9	33923271	33923650	+	0	NA	exon (NM_018449, exon 25 of 29)	exon (NM_018449, exon 25 of 29)	10904	NM_001282530	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
237070	chrX	103628671	103629950	+	0	NA	intron (NM_004780, intron 1 of 2)	intron (NM_004780, intron 1 of 2)	335	NM_004780	9338		NM_004780	ENSG00000172465	TCEAL1	HIJRS|NEDGFAX|SIIR|WEX9|p21|pp21	transcription elongation factor A like 1	protein-coding
85257	chr16	48508421	48508680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	101630	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
51333	chr12	51367201	51367950	+	0	NA	intron (NM_007210, intron 4 of 11)	intron (NM_007210, intron 4 of 11)	-20896	NM_001971	1990		NM_001971	ENSG00000139610	CELA1	ELA1	chymotrypsin like elastase 1	protein-coding
13781	chr1	117342421	117342680	+	0	NA	Intergenic	Intergenic	-24899	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
61670	chr13	73972871	73973500	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	160744	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
125686	chr2	20334901	20335430	+	0	NA	intron (NM_001352925, intron 1 of 19)	AluJo|SINE|Alu	-7779	NM_001282790	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
137918	chr2	200961171	200961730	+	0	NA	intron (NM_006190, intron 1 of 17)	intron (NM_006190, intron 1 of 17)	2210	NR_033915	4999		NM_006190	ENSG00000115942	ORC2	ORC2L	origin recognition complex subunit 2	protein-coding
194718	chr6	33773021	33773580	+	0	NA	intron (NM_001348709, intron 8 of 8)	intron (NM_001348709, intron 8 of 8)	13642	NM_001143944	221496		NM_181336	ENSG00000161904	LEMD2	CTRCT42|LEM2|MARUPS|NET25|dJ482C21.1	LEM domain nuclear envelope protein 2	protein-coding
209985	chr7	92833801	92834480	+	0	NA	promoter-TSS (NM_001259)	promoter-TSS (NM_001259)	-181	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
52305	chr12	54749271	54749780	+	0	NA	Intergenic	Intergenic	-101160	NM_001300854	117159		NM_053283	ENSG00000161634	DCD	AIDD|DCD-1|DSEP|HCAP|PIF	dermcidin	protein-coding
134124	chr2	134136721	134137400	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	9935	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
219802	chr8	81278751	81279050	+	0	NA	Intergenic	Intergenic	-1636	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
107523	chr18	48227371	48227730	+	0	NA	intron (NM_001371285, intron 1 of 5)	intron (NM_001371285, intron 1 of 5)	-24751	NM_001350280	84322		NM_032362	ENSG00000280197	ZBTB7C-AS2	C18orf12|HEIL1|HsT2508	ZBTB7C antisense RNA 2	ncRNA
156349	chr22	40855021	40855280	+	0	NA	intron (NM_001278589, intron 1 of 11)	intron (NM_001278589, intron 1 of 11)	1489	NM_003932	6767		NM_003932	ENSG00000100380	ST13	AAG2|FAM10A1|FAM10A4|HIP|HOP|HSPABP|HSPABP1|P48|PRO0786|SNC6	ST13 Hsp70 interacting protein	protein-coding
126085	chr2	25817451	25818230	+	0	NA	intron (NM_018263, intron 2 of 11)	intron (NM_018263, intron 2 of 11)	13061	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
37731	chr11	31508851	31510270	+	0	NA	promoter-TSS (NM_001288726)	promoter-TSS (NM_001288726)	62	NM_144981	196294		NM_144981	ENSG00000148950	IMMP1L	IMMP1|IMP1|IMP1-LIKE	inner mitochondrial membrane peptidase subunit 1	protein-coding
66074	chr14	58638821	58639480	+	0	NA	non-coding (NR_046095, exon 1 of 4)	non-coding (NR_046095, exon 1 of 4)	313	NR_165652	51339		NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding
195084	chr6	35580551	35580850	+	0	NA	3' UTR (NM_001145777, exon 7 of 7)	3' UTR (NM_001145777, exon 7 of 7)	-67804	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
133291	chr2	113587101	113587800	+	0	NA	intron (NR_024077, intron 1 of 10)	intron (NR_024077, intron 1 of 10)	3797	NR_024077	375260		NM_198943	ENSG00000291134	WASH2P	FAM39B	WASP family homolog 2, pseudogene	pseudo
28580	chr10	51341321	51341780	+	0	NA	intron (NM_001098512, intron 2 of 17)	intron (NM_001098512, intron 2 of 17)	41977	NR_030336	693190		NR_030336	ENSG00000207813	MIR605	MIRN605|hsa-mir-605|mir-605	microRNA 605	ncRNA
35145	chr11	725721	726730	+	0	NA	intron (NM_022772, intron 18 of 20)	CpG-3776	-19142	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
92928	chr17	16684571	16684930	+	0	NA	Intergenic	AluJb|SINE|Alu	-5491	NM_001382000	9720		NM_014695	ENSG00000170160	CCDC144A	-	coiled-coil domain containing 144A	protein-coding
74905	chr15	63609921	63611730	+	0	NA	intron (NM_003922, intron 77 of 77)	intron (NM_003922, intron 77 of 77)	-9998	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
49896	chr12	39413951	39414450	+	0	NA	intron (NM_001378440, intron 1 of 36)	intron (NM_001378440, intron 1 of 36)	28920	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
79597	chr16	1054221	1054480	+	0	NA	Intergenic	Intergenic	-18406	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
164672	chr3	67018401	67018600	+	0	NA	Intergenic	Intergenic	20193	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
94313	chr17	28753651	28754080	+	0	NA	Intergenic	AluSq2|SINE|Alu	9854	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
78012	chr15	89773021	89773350	+	0	NA	Intergenic	L1ME3G|LINE|L1	-3147	NM_001039958	145873		NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior bHLH transcription factor 2	protein-coding
57766	chr12	122984751	122985330	+	0	NA	3' UTR (NM_020845, exon 26 of 26)	3' UTR (NM_020845, exon 26 of 26)	4980	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
53564	chr12	67632171	67632530	+	0	NA	Intergenic	L2b|LINE|L2	-16395	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
173071	chr4	6180571	6181830	+	0	NA	intron (NM_144720, intron 1 of 12)	L2b|LINE|L2	13419	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
139828	chr2	230418371	230418750	+	0	NA	intron (NM_001080391, intron 2 of 28)	HAL1b|LINE|L1	1804	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
13992	chr1	120635171	120635430	+	0	NA	intron (NR_144516, intron 4 of 43)	intron (NR_144516, intron 4 of 43)	30136	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
202676	chr6	158790601	158791050	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-26072	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
67484	chr14	70916721	70917050	+	0	NA	intron (NM_014982, intron 1 of 35)	Tigger1|DNA|TcMar-Tigger	9426	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
45950	chr11	121377951	121378250	+	0	NA	Intergenic	L1MD2|LINE|L1	-74214	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
102170	chr17	75136601	75136800	+	0	NA	intron (NM_001002032, intron 3 of 3)	AluSg7|SINE|Alu	-4905	NM_001252377	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
111841	chr19	4559301	4559800	+	0	NA	5' UTR (NM_032108, exon 1 of 17)	5' UTR (NM_032108, exon 1 of 17)	134	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
13823	chr1	117620451	117621650	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	15002	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
4139	chr1	19336471	19337030	+	0	NA	Intergenic	L1MCb|LINE|L1	24424	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
189040	chr5	169654071	169654450	+	0	NA	intron (NR_156756, intron 1 of 52)	intron (NR_156756, intron 1 of 52)	16985	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
21263	chr1	204390271	204390430	+	0	NA	Intergenic	Intergenic	-20631	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
93505	chr17	19000101	19000300	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	4564	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
48970	chr12	12986021	12986600	+	0	NA	intron (NR_149067, intron 2 of 2)	intron (NR_149067, intron 2 of 2)	6473	NR_038920	100506314		NR_038920	ENSG00000247498	GPRC5D-AS1	-	GPRC5D and HEBP1 antisense RNA 1	ncRNA
40288	chr11	63853101	63853900	+	0	NA	intron (NM_004954, intron 1 of 16)	Charlie1|DNA|hAT-Charlie	14390	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
183601	chr5	80202651	80203200	+	0	NA	non-coding (NR_126061, exon 2 of 14)	non-coding (NR_126061, exon 2 of 14)	53123	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
214478	chr7	150375701	150376730	+	0	NA	Intergenic	MIRb|SINE|MIR	-3115	NM_173680	285971		NM_173680	ENSG00000196456	ZNF775	-	zinc finger protein 775	protein-coding
152202	chr22	20119401	20119800	+	0	NA	intron (NM_002882, intron 2 of 5)	AluY|SINE|Alu	1855	NM_001278641	5902		NM_002882	ENSG00000099901	RANBP1	HTF9A	RAN binding protein 1	protein-coding
118450	chr19	35866421	35866680	+	0	NA	3' UTR (NM_199180, exon 15 of 15)	3' UTR (NM_199180, exon 15 of 15)	-1895	NM_005166	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
11426	chr1	89746621	89746880	+	0	NA	Intergenic	L3|LINE|CR1	-74282	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
51654	chr12	53044071	53044530	+	0	NA	non-coding (NR_033854, exon 4 of 4)	non-coding (NR_033854, exon 4 of 4)	-2691	NM_198316	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
34884	chr11	372001	372650	+	0	NA	intron (NM_178537, intron 2 of 19)	intron (NM_178537, intron 2 of 19)	2826	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
175610	chr4	75939301	75940600	+	0	NA	intron (NM_014435, intron 2 of 10)	CpG	1063	NM_014435	27163		NM_014435	ENSG00000138744	NAAA	ASAHL|PLT	N-acylethanolamine acid amidase	protein-coding
156043	chr22	39974601	39974800	+	0	NA	TTS (NM_001291826)	TTS (NM_001291826)	-20254	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
221417	chr8	123548371	123548530	+	0	NA	Intergenic	Intergenic	-7244	NM_001242463	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
234149	chrX	10110021	10111400	+	0	NA	intron (NM_015691, intron 9 of 22)	intron (NM_015691, intron 9 of 22)	-46235	NM_001256944	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
104147	chr17	80386601	80387150	+	0	NA	exon (NM_001256071, exon 63 of 68)	exon (NM_001256071, exon 63 of 68)	-28292	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
75394	chr15	65756271	65756730	+	0	NA	intron (NM_001376920, intron 1 of 30)	intron (NM_001376920, intron 1 of 30)	35793	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
183951	chr5	88172721	88172980	+	0	NA	Intergenic	L1PA7|LINE|L1	95995	NM_153354	153396		NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
41773	chr11	66839921	66840350	+	0	NA	intron (NM_024650, intron 15 of 16)	intron (NM_024650, intron 15 of 16)	-3306	NM_005133	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
40939	chr11	65309971	65310530	+	0	NA	Intergenic	Intergenic	-4616	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
178894	chr4	157978801	157979000	+	0	NA	Intergenic	Intergenic	-191852	NR_147408	285505		NR_147407	ENSG00000248429	GASK1B-AS1	FAM198B-AS1	GASK1B antisense RNA 1	ncRNA
49351	chr12	22250821	22251080	+	0	NA	intron (NM_001304450, intron 2 of 3)	intron (NM_001304450, intron 2 of 3)	83764	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
228487	chr9	100063101	100063300	+	0	NA	intron (NM_015051, intron 1 of 11)	intron (NM_015051, intron 1 of 11)	35800	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
167946	chr3	136198801	136199000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2565	NM_018133	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
165234	chr3	73015321	73015980	+	0	NA	intron (NM_001318028, intron 3 of 3)	AluY|SINE|Alu	18839	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
234092	chrX	9339421	9340330	+	0	NA	Intergenic	Intergenic	-123420	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
39480	chr11	61004051	61005550	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	33120	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
195317	chr6	36601481	36602500	+	0	NA	non-coding (NR_036610, exon 7 of 7)	non-coding (NR_036610, exon 7 of 7)	7628	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
32594	chr10	103503871	103504880	+	0	NA	intron (NR_120675, intron 2 of 3)	L1MC3|LINE|L1	10670	NM_004210	9148		NM_004210	ENSG00000107954	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding
61521	chr13	59440951	59441450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-571518	NR_109838	100874195		NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
65529	chr14	51914271	51914500	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	4186	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
196052	chr6	42104051	42105480	+	0	NA	exon (NM_001164446, exon 4 of 5)	exon (NM_001164446, exon 4 of 5)	37855	NM_001164446	647024		NM_001164446	ENSG00000188112	C6orf132	LncCCLM|bA7K24.2	chromosome 6 open reading frame 132	protein-coding
52456	chr12	55941371	55941530	+	0	NA	intron (NM_201554, intron 14 of 23)	intron (NM_201554, intron 14 of 23)	5442	NM_001351037	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
158628	chr3	4966001	4966400	+	0	NA	intron (NR_125915, intron 1 of 3)	L1PA4|LINE|L1	-13237	NM_003670	8553		NM_003670	ENSG00000134107	BHLHE40	BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14	basic helix-loop-helix family member e40	protein-coding
151425	chr21	46124921	46125180	+	0	NA	intron (NM_001849, intron 23 of 27)	intron (NM_001849, intron 23 of 27)	-26325	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
188382	chr5	152142801	152143180	+	0	NA	intron (NR_109876, intron 1 of 2)	intron (NR_109876, intron 1 of 2)	184092	NR_109876	101927115		NR_109876	ENSG00000254226	LINC01933	CTB-12O2.1	long intergenic non-protein coding RNA 1933	ncRNA
16945	chr1	155921551	155922050	+	0	NA	intron (NM_014949, intron 9 of 13)	intron (NM_014949, intron 9 of 13)	-1758	NR_002974	677823		NR_002974	ENSG00000207475	SNORA80E	ACA42|SNORA42	small nucleolar RNA, H/ACA box 80E	snoRNA
167690	chr3	130276251	130276500	+	0	NA	Intergenic	Intergenic	63555	NR_027898	646300		NR_027898		COL6A4P2	COL6A4	collagen type VI alpha 4 pseudogene 2	pseudo
88277	chr16	83806721	83806980	+	0	NA	Intergenic	MER41A|LTR|ERV1	-1128	NM_001537	3281		NM_001537	ENSG00000230989	HSBP1	NPC-A-13	heat shock factor binding protein 1	protein-coding
172920	chr4	3502151	3503380	+	0	NA	TTS (NM_002337)	TTS (NM_002337)	18221	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
127368	chr2	39264801	39265380	+	0	NA	intron (NM_003618, intron 28 of 33)	intron (NM_003618, intron 28 of 33)	-21107	NR_144521	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
179361	chr4	183406051	183406150	+	0	NA	Intergenic	AluY|SINE|Alu	-38536	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
148557	chr20	64254271	64254430	+	0	NA	Intergenic	Intergenic	-1345	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
12624	chr1	109111301	109111500	+	0	NA	intron (NM_001366200, intron 1 of 4)	AluJr|SINE|Alu	1347	NR_158763	127003		NM_001122961	ENSG00000179902	CFAP276	C10orf194|C1orf194	cilia and flagella associated protein 276	protein-coding
82679	chr16	19882301	19882700	+	0	NA	intron (NM_001304771, intron 1 of 3)	intron (NM_001304771, intron 1 of 3)	2348	NM_016235	51704		NM_016235	ENSG00000167191	GPRC5B	MLC3|RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding
238877	chrX	154540701	154541130	+	0	NA	promoter-TSS (NM_001377313)	promoter-TSS (NM_001377313)	-323	NM_001377312	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
108879	chr18	79395611	79397030	+	0	NA	exon (NM_001278670, exon 1 of 9)	exon (NM_001278670, exon 1 of 9)	390	NM_001278669	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
23133	chr1	226702371	226702530	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-27382	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
77251	chr15	81308951	81309450	+	0	NA	non-coding (NR_135013, exon 5 of 5)	non-coding (NR_135013, exon 5 of 5)	12230	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
92364	chr17	8201271	8201430	+	0	NA	Intergenic	L1ME3G|LINE|L1	8875	NR_132731	9212		NM_004217	ENSG00000178999	AURKB	AIK2|AIM-1|AIM1|ARK-2|ARK2|AurB|IPL1|PPP1R48|STK-1|STK12|STK5|aurkb-sv1|aurkb-sv2	aurora kinase B	protein-coding
210740	chr7	100633701	100634830	+	0	NA	promoter-TSS (NM_001206855)	promoter-TSS (NM_001206855)	-615	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
181312	chr5	40336271	40336430	+	0	NA	Intergenic	L1PA6|LINE|L1	284059	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
204997	chr7	6445521	6446050	+	0	NA	intron (NM_139179, intron 2 of 14)	L1MB8|LINE|L1	2169	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
142082	chr20	2463071	2463230	+	0	NA	promoter-TSS (NR_003684)	promoter-TSS (NR_003684)	-103	NR_003684	100113378		NR_003684		SNORD119	-	small nucleolar RNA, C/D box 119	snoRNA
44039	chr11	95150221	95152050	+	0	NA	non-coding (NR_110303, exon 1 of 3)	non-coding (NR_110303, exon 1 of 3)	596	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
134999	chr2	152740251	152741000	+	0	NA	intron (NM_001371972, intron 3 of 3)	(AT)n|Simple_repeat|Simple_repeat	21676	NM_001350068	151188		NM_152522	ENSG00000177917	ARL6IP6	AIP-6|AIP6|PFAAP1	ADP ribosylation factor like GTPase 6 interacting protein 6	protein-coding
183865	chr5	87265521	87265880	+	0	NA	Intergenic	Intergenic	-2183	NM_002890	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
197799	chr6	87693301	87693900	+	0	NA	intron (NM_018064, intron 1 of 4)	AluSg|SINE|Alu	8633	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
153539	chr22	26583201	26583600	+	0	NA	intron (NM_001362923, intron 1 of 7)	AluSx1|SINE|Alu	6732	NM_003595	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
221591	chr8	125431101	125431600	+	0	NA	promoter-TSS (NM_001282985)	promoter-TSS (NM_001282985)	-859	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
165380	chr3	94004271	94004650	+	0	NA	intron (NM_182896, intron 3 of 10)	intron (NM_182896, intron 3 of 10)	24137	NM_001001850	415117		NM_001001850	ENSG00000178750	STX19	-	syntaxin 19	protein-coding
33300	chr10	114809971	114810330	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-11630	NM_020940	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
56050	chr12	110520301	110520500	+	0	NA	intron (NM_001286532, intron 9 of 10)	AluJb|SINE|Alu	18069	NM_001368054	144715		NM_152442	ENSG00000151164	RAD9B	-	RAD9 checkpoint clamp component B	protein-coding
99638	chr17	50621001	50621200	+	0	NA	intron (NM_001256324, intron 33 of 35)	intron (NM_001256324, intron 33 of 35)	-13781	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
179867	chr5	563871	564030	+	0	NA	Intergenic	CpG	-28068	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
130991	chr2	87772021	87772280	+	0	NA	intron (NM_001382344, intron 22 of 22).2	intron (NM_001382344, intron 22 of 22).2	24057	NM_001032392	5343		NM_001032392	ENSG00000183281	PLGLB1	PLGL|PLGP1|PRGB|PRP-B	plasminogen like B1	protein-coding
98805	chr17	48266571	48266730	+	0	NA	intron (NM_001075099, intron 4 of 12)	AluY|SINE|Alu	-27697	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
98491	chr17	47240071	47240230	+	0	NA	Intergenic	Intergenic	-13677	NM_000212	3690		NM_000212	ENSG00000259207	ITGB3	BDPLT16|BDPLT2|BDPLT24|CD61|GP3A|GPIIIa|GT|GT2	integrin subunit beta 3	protein-coding
218247	chr8	42147721	42148730	+	0	NA	Intergenic	(AAAT)n|Simple_repeat|Simple_repeat	-4721	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
84282	chr16	30073321	30073580	+	0	NA	Intergenic	AluSx|SINE|Alu	-2544	NM_001303503	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
238371	chrX	149931671	149932350	+	0	NA	TTS (NM_001013845)	TTS (NM_001013845)	2437	NM_001351114	101927685		NM_001351114	ENSG00000283463	HSFX4	-	heat shock transcription factor family, X-linked member 4	protein-coding
223571	chr8	144267301	144267530	+	0	NA	intron (NM_001080514, intron 1 of 1)	intron (NM_001080514, intron 1 of 1)	962	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
88757	chr16	86575771	86576730	+	0	NA	Intergenic	CpG	-2299	NM_005250	2300		NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7|OTSC11	forkhead box L1	protein-coding
218323	chr8	42768251	42768950	+	0	NA	5' UTR (NM_004198, exon 1 of 6)	5' UTR (NM_004198, exon 1 of 6)	186	NM_004198	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
37120	chr11	13316771	13317130	+	0	NA	intron (NM_001351815, intron 2 of 17)	MIRb|SINE|MIR	39160	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
202649	chr6	158770751	158771280	+	0	NA	intron (NM_003379, intron 8 of 12)	intron (NM_003379, intron 8 of 12)	-6262	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
132647	chr2	108727021	108727280	+	0	NA	intron (NM_006267, intron 1 of 28)	SVA_F|Retroposon|SVA	7668	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
129707	chr2	70789551	70790400	+	0	NA	intron (NM_001004311, intron 1 of 4)	CpG	668	NM_001004311	344018		NM_001004311	ENSG00000183733	FIGLA	BHLHC8|FIGALPHA|POF6	folliculogenesis specific bHLH transcription factor	protein-coding
20816	chr1	201283301	201283800	+	0	NA	promoter-TSS (NM_000299)	promoter-TSS (NM_000299)	44	NM_001005337	5317		NM_000299	ENSG00000081277	PKP1	B6P|EDSFS	plakophilin 1	protein-coding
63980	chr14	22230971	22231380	+	0	NA	Intergenic	Intergenic	201578	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
94235	chr17	28663601	28664330	+	0	NA	intron (NM_003170, intron 1 of 36)	intron (NM_003170, intron 1 of 36)	1760	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
229135	chr9	114475451	114476150	+	0	NA	intron (NM_015404, intron 2 of 11)	intron (NM_015404, intron 2 of 11)	27415	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
192599	chr6	26016871	26017030	+	0	NA	TTS (NM_005325)	TTS (NM_005325)	837	NM_005325	3024		NM_005325	ENSG00000124610	H1-1	H1.1|H1A|H1F1|HIST1|HIST1H1A	H1.1 linker histone, cluster member	protein-coding
205930	chr7	25892801	25893550	+	0	NA	Intergenic	Intergenic	56811	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
236702	chrX	77787351	77787530	+	0	NA	Intergenic	AluJo|SINE|Alu	-1224	NM_138270	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
77771	chr15	85831321	85831880	+	0	NA	Intergenic	Intergenic	5965	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
156376	chr22	41094071	41094530	+	0	NA	intron (NM_001362843, intron 1 of 29)	intron (NM_001362843, intron 1 of 29)	1708	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
198463	chr6	106165801	106166500	+	0	NA	Intergenic	AluJr|SINE|Alu	67209	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
4102	chr1	19251201	19252430	+	0	NA	promoter-TSS (NM_001271427)	promoter-TSS (NM_001271427)	10	NM_016183	51154		NM_016183	ENSG00000053372	MRTO4	C1orf33|MRT4|dJ657E11.4	MRT4 homolog, ribosome maturation factor	protein-coding
135382	chr2	160483851	160484230	+	0	NA	intron (NM_016836, intron 1 of 13)	FLAM_C|SINE|Alu	9767	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
25995	chr10	12044571	12044830	+	0	NA	Intergenic	Intergenic	-1530	NM_080599	26019		NM_015542	ENSG00000151461	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense mediated mRNA decay	protein-coding
209492	chr7	76636971	76637700	+	0	NA	Intergenic	Intergenic	-10032	NM_152992	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
82400	chr16	16154771	16154930	+	0	NA	intron (NR_147784, intron 26 of 28)	intron (NR_147784, intron 26 of 28)	68621	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
90812	chr17	2259671	2260700	+	0	NA	intron (NM_017575, intron 8 of 18)	intron (NM_017575, intron 8 of 18)	6000	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
51215	chr12	50597571	50598100	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	92850	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
176813	chr4	102541601	102542050	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-39339	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
82168	chr16	14918901	14919380	+	0	NA	intron (NR_146231, intron 5 of 38)	CpG	-6797	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
226499	chr9	71774551	71775250	+	0	NA	Intergenic	AluJb|SINE|Alu	-6387	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
25960	chr10	11612521	11613400	+	0	NA	TTS (NR_160647)	TTS (NR_160647)	-1171	NR_125732	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
11648	chr1	91793371	91793930	+	0	NA	intron (NR_036634, intron 4 of 17)	AluSz6|SINE|Alu	92501	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
3215	chr1	13763971	13764430	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	14785	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
76579	chr15	75335721	75336780	+	0	NA	intron (NM_001284379, intron 1 of 5)	CpG	187	NM_001321844	54939		NM_017828	ENSG00000140365	COMMD4	-	COMM domain containing 4	protein-coding
116728	chr19	18459071	18459830	+	0	NA	intron (NM_006532, intron 5 of 11)	intron (NM_006532, intron 5 of 11)	-21317	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
195811	chr6	41191451	41192300	+	0	NA	3' UTR (NM_024807, exon 5 of 5)	3' UTR (NM_024807, exon 5 of 5)	9274	NM_024807	79865		NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
86006	chr16	57473271	57473430	+	0	NA	3' UTR (NM_018110, exon 9 of 9)	3' UTR (NM_018110, exon 9 of 9)	6407	NM_001369621	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
118044	chr19	34253351	34253450	+	0	NA	Intergenic	L1MB3|LINE|L1	-1154	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
230141	chr9	127737101	127738050	+	0	NA	TTS (NM_001142534)	TTS (NM_001142534)	-2281	NM_001134430	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
137692	chr2	197486771	197487280	+	0	NA	promoter-TSS (NR_132787)	promoter-TSS (NR_132787)	-122	NR_132788	106635540		NR_132788		SNORA105B	-	small nucleolar RNA, H/ACA box 105B	snoRNA
82861	chr16	21525121	21525880	+	0	NA	Intergenic	Intergenic	-5056	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
41253	chr11	65829921	65830180	+	0	NA	Intergenic	HAL1|LINE|L1	-3913	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
106253	chr18	12237121	12237430	+	0	NA	Intergenic	Intergenic	-17086	NM_001318383	1149		NM_001279	ENSG00000176194	CIDEA	CIDE-A	cell death inducing DFFA like effector a	protein-coding
195536	chr6	37354751	37355000	+	0	NA	intron (NM_183078, intron 1 of 6)	intron (NM_183078, intron 1 of 6)	892	NR_046399	9025		NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
77948	chr15	89352421	89352680	+	0	NA	Intergenic	Intergenic	-9029	NR_133001	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
38693	chr11	46592451	46592750	+	0	NA	intron (NM_001367471, intron 1 of 18)	AluSz|SINE|Alu	-1236	NM_017749	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
65860	chr14	55056351	55056880	+	0	NA	intron (NM_144578, intron 1 of 3)	AluY|SINE|Alu	4968	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
119232	chr19	39469771	39469950	+	0	NA	intron (NM_001111020, intron 16 of 29)	intron (NM_001111020, intron 16 of 29)	1638	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
19934	chr1	184563301	184563500	+	0	NA	intron (NM_030806, intron 3 of 5)	intron (NM_030806, intron 3 of 5)	176371	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
189454	chr5	173008671	173008830	+	0	NA	intron (NM_003945, intron 2 of 3)	AluY|SINE|Alu	-11976	NR_002988	677841		NR_002988	ENSG00000212402	SNORA74B	U19-2	small nucleolar RNA, H/ACA box 74B	snoRNA
118922	chr19	38734171	38735000	+	0	NA	intron (NM_144691, intron 15 of 20)	MIR|SINE|MIR	9889	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
65895	chr14	55209071	55209230	+	0	NA	Intergenic	AluSz|SINE|Alu	-17565	NM_014750	9787		NM_014750	ENSG00000126787	DLGAP5	DLG7|HURP	DLG associated protein 5	protein-coding
65401	chr14	50794271	50794650	+	0	NA	intron (NM_020921, intron 4 of 30)	intron (NM_020921, intron 4 of 30)	-27337	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
61409	chr13	51764251	51765200	+	0	NA	3' UTR (NM_052950, exon 12 of 12)	3' UTR (NM_052950, exon 12 of 12)	39010	NM_001377932	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
29361	chr10	69624271	69624730	+	0	NA	Intergenic	L1MDa|LINE|L1	-5747	NM_145306	219738		NM_145306	ENSG00000171224	FAM241B	C10orf35	family with sequence similarity 241 member B	protein-coding
108846	chr18	79192001	79192400	+	0	NA	intron (NM_198531, intron 8 of 29)	L1MEf|LINE|L1	122806	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
111223	chr19	3502901	3503600	+	0	NA	Intergenic	Intergenic	-2576	NM_001145165	83475		NM_031304	ENSG00000129932	DOHH	HLRC1|NEDMVIC|hDOHH	deoxyhypusine hydroxylase	protein-coding
24304	chr1	236684821	236685500	+	0	NA	Intergenic	Intergenic	-1294	NM_001278344								
171091	chr3	195493071	195493230	+	0	NA	Intergenic	Intergenic	-50130	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
125263	chr2	10437851	10438980	+	0	NA	Intergenic	L1M5|LINE|L1	8434	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
143315	chr20	25393251	25393850	+	0	NA	Intergenic	Intergenic	-2715	NM_001042472	26090		NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12	abhydrolase domain containing 12, lysophospholipase	protein-coding
101758	chr17	72592471	72593080	+	0	NA	promoter-TSS (NR_137281)	promoter-TSS (NR_137281)	29	NR_036488	100499467		NR_036488	ENSG00000227036	LINC00673	ERRLR01|HI-LNC75|HILNC75|LUCAIR1|RASON|SLNCR|SLNCR1	long intergenic non-protein coding RNA 673	ncRNA
64016	chr14	22502521	22502930	+	0	NA	Intergenic	Intergenic	-19766	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
102624	chr17	76002301	76002500	+	0	NA	non-coding (NR_037709, exon 7 of 10)	non-coding (NR_037709, exon 7 of 10)	1494	NM_001258	1018		NM_001258	ENSG00000250506	CDK3	-	cyclin dependent kinase 3	protein-coding
141862	chr20	645321	646350	+	0	NA	TTS (NM_080725)	TTS (NM_080725)	7365	NM_080725	140809		NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
50847	chr12	49125371	49125530	+	0	NA	Intergenic	Intergenic	5945	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
127431	chr2	42141421	42142150	+	0	NA	TTS (NR_110584)	TTS (NR_110584)	-27568	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
187202	chr5	140667901	140668650	+	0	NA	exon (NM_017706, exon 2 of 7)	exon (NM_017706, exon 2 of 7)	3476	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
111347	chr19	3665621	3666750	+	0	NA	intron (NM_001300849, intron 2 of 16)	intron (NM_001300849, intron 2 of 16)	34283	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
179438	chr4	184385751	184386650	+	0	NA	Intergenic	Intergenic	-3894	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
131271	chr2	96088871	96089030	+	0	NA	Intergenic	Intergenic	27621	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
23880	chr1	234866271	234866730	+	0	NA	Intergenic	Intergenic	97499	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
8627	chr1	41682271	41682430	+	0	NA	intron (NM_001127714, intron 1 of 7)	L2b|LINE|L2	-197667	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
238908	chrX	154711471	154711630	+	0	NA	intron (NR_104114, intron 3 of 8)	intron (NR_104114, intron 3 of 8)	39527	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
69124	chr14	92531121	92532730	+	0	NA	intron (NM_024832, intron 1 of 9)	MIRc|SINE|MIR	18144	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
136354	chr2	176080601	176080900	+	0	NA	exon (NM_001080458, exon 3 of 3)	exon (NM_001080458, exon 3 of 3)	3212	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
218029	chr8	38768171	38768930	+	0	NA	intron (NM_001352804, intron 1 of 10)	intron (NM_001352804, intron 1 of 10)	11275	NM_001352790	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
167979	chr3	136723851	136723950	+	0	NA	intron (NM_005862, intron 1 of 33)	SVA_D|Retroposon|SVA	28478	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
235983	chrX	53798451	53798550	+	0	NA	Intergenic	MIRb|SINE|MIR	-111781	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
58864	chr12	133145671	133146030	+	0	NA	intron (NM_015394, intron 2 of 4)	MIRb|SINE|MIR	15223	NM_015394	7556		NM_015394	ENSG00000256223	ZNF10	KOX1	zinc finger protein 10	protein-coding
40106	chr11	62809121	62810150	+	0	NA	intron (NM_001244666, intron 10 of 10)	AluY|SINE|Alu	-4195	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
200645	chr6	137025771	137026130	+	0	NA	intron (NM_001278724, intron 1 of 5)	intron (NM_001278724, intron 1 of 5)	18362	NM_001278722	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
172452	chr4	1983551	1984200	+	0	NA	exon (NM_005663, exon 9 of 11)	exon (NM_005663, exon 9 of 11)	2602	NR_030641	100126332		NR_030641	ENSG00000284587	MIR943	MIRN943|hsa-mir-943	microRNA 943	ncRNA
235212	chrX	41360201	41361060	+	0	NA	intron (NR_126093, intron 18 of 18)	AluSz6|SINE|Alu	26464	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
102723	chr17	76192871	76193030	+	0	NA	intron (NM_052916, intron 2 of 18)	AluJb|SINE|Alu	47543	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
234176	chrX	11766601	11767730	+	0	NA	3' UTR (NM_078628, exon 9 of 9)	3' UTR (NM_078628, exon 9 of 9)	7518	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
231455	chr9	131275201	131275740	+	0	NA	intron (NM_033387, intron 1 of 1)	intron (NM_033387, intron 1 of 1)	1040	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
39266	chr11	57756951	57757050	+	0	NA	intron (NR_037646, intron 2 of 20)	intron (NR_037646, intron 2 of 20)	-4802	NM_001206883	1500		NM_001331	ENSG00000198561	CTNND1	BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
238658	chrX	154016371	154017050	+	0	NA	intron (NM_001025242, intron 8 of 13)	intron (NM_001025242, intron 8 of 13)	3192	NM_001025242	3654		NM_001569	ENSG00000184216	IRAK1	IRAK|pelle	interleukin 1 receptor associated kinase 1	protein-coding
18523	chr1	161864651	161864780	+	0	NA	intron (NM_007348, intron 14 of 15)	intron (NM_007348, intron 14 of 15)	98395	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
180251	chr5	1651501	1652030	+	0	NA	Intergenic	Intergenic	-17760	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
15506	chr1	150477251	150478050	+	0	NA	Intergenic	Intergenic	-9769	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
190595	chr5	181115001	181115400	+	0	NA	Intergenic	CpG	10104	NM_001258283	26693		NM_001258283	ENSG00000185372	OR2V1	OR2V1P|OST265	olfactory receptor family 2 subfamily V member 1	protein-coding
134670	chr2	144469671	144470400	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-49579	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
75024	chr15	64091771	64092430	+	0	NA	intron (NR_110310, intron 1 of 5)	intron (NR_110310, intron 1 of 5)	1738	NM_032231	84191		NM_032231	ENSG00000166797	CIAO2A	CIA2A|FAM96A	cytosolic iron-sulfur assembly component 2A	protein-coding
105914	chr18	3448801	3450100	+	0	NA	promoter-TSS (NM_003244)	promoter-TSS (NM_003244)	-118	NM_001278682	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
91944	chr17	7347701	7348430	+	0	NA	intron (NM_014716, intron 15 of 21)	intron (NM_014716, intron 15 of 21)	-3824	NM_001002914	147040		NM_001002914	ENSG00000213859	KCTD11	C17orf36|KCASH1|REN|REN/KCTD11	potassium channel tetramerization domain containing 11	protein-coding
169335	chr3	160003501	160003900	+	0	NA	intron (NR_108088, intron 6 of 9)	intron (NR_108088, intron 6 of 9)	14865	NM_001354582	3592		NM_000882	ENSG00000168811	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
112258	chr19	5787901	5788600	+	0	NA	intron (NM_020175, intron 4 of 12)	intron (NM_020175, intron 4 of 12)	2913	NM_020175	56931		NM_020175	ENSG00000141994	DUS3L	DUS3	dihydrouridine synthase 3 like	protein-coding
97897	chr17	45114951	45115250	+	0	NA	promoter-TSS (NR_106842)	promoter-TSS (NR_106842)	-667	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
59231	chr13	23679471	23679630	+	0	NA	Intergenic	Intergenic	100190	NM_001204458	55504		NM_018647	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	TNF receptor superfamily member 19	protein-coding
85777	chr16	56936621	56937530	+	0	NA	intron (NM_014685, intron 4 of 7)	intron (NM_014685, intron 4 of 7)	4933	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
60916	chr13	46181701	46182800	+	0	NA	promoter-TSS (NM_002298)	promoter-TSS (NM_002298)	-73	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
94058	chr17	27380651	27381480	+	0	NA	Intergenic	Intergenic	-36940	NR_033892	440419		NR_033892	ENSG00000290422	TBC1D3P5	-	TBC1 domain family member 3 pseudogene 5	pseudo
139472	chr2	224016921	224017180	+	0	NA	intron (NM_006216, intron 1 of 8)	L1MD2|LINE|L1	14428	NR_073116	5270		NM_006216	ENSG00000135919	SERPINE2	GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI	serpin family E member 2	protein-coding
62530	chr13	99546901	99547300	+	0	NA	exon (NM_004800, exon 11 of 17)	exon (NM_004800, exon 11 of 17)	-30012	NR_126390	104355149		NR_126390		LINC01039	-	long intergenic non-protein coding RNA 1039	ncRNA
92874	chr17	16418671	16419500	+	0	NA	intron (NM_016113, intron 2 of 14)	intron (NM_016113, intron 2 of 14)	3514	NM_016113	51393		NM_016113	ENSG00000187688	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel subfamily V member 2	protein-coding
142633	chr20	5658871	5659230	+	0	NA	Intergenic	Intergenic	-48044	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
216005	chr8	8925971	8926280	+	0	NA	Intergenic	Intergenic	-32495	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
173893	chr4	24582371	24582850	+	0	NA	intron (NM_001358, intron 1 of 13)	intron (NM_001358, intron 1 of 13)	1944	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
162024	chr3	46558051	46558730	+	0	NA	intron (NR_073385, intron 2 of 2)	L1MEf|LINE|L1	992	NR_073385	83598		NM_031441	ENSG00000268324	LRRC2-AS1	LUZP3|LUZP3P|LUZPP1	LRRC2 antisense RNA 1	ncRNA
17068	chr1	156111401	156111600	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	-3211	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
29003	chr10	63392851	63393180	+	0	NA	intron (NM_001322258, intron 1 of 24)	AluJb|SINE|Alu	-19967	NR_031566	100302150		NR_031566	ENSG00000221063	MIR1296	MIRN1296|hsa-mir-1296|mir-1296	microRNA 1296	ncRNA
67443	chr14	70660951	70661900	+	0	NA	intron (NM_015351, intron 1 of 2)	intron (NM_015351, intron 1 of 2)	19509	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
15348	chr1	149929671	149930150	+	0	NA	exon (NM_181873, exon 15 of 17)	exon (NM_181873, exon 15 of 17)	-2107	NM_005850	10262		NM_005850	ENSG00000143368	SF3B4	AFD1|Hsh49|SAP49|SF3b49	splicing factor 3b subunit 4	protein-coding
223419	chr8	143945061	143945850	+	0	NA	promoter-TSS (NR_030383)	promoter-TSS (NR_030383)	-176	NR_030383	724031		NR_030383	ENSG00000207574	MIR661	MIRN661|hsa-mir-661	microRNA 661	ncRNA
39791	chr11	61955121	61956450	+	0	NA	exon (NM_004183, exon 4 of 11)	exon (NM_004183, exon 4 of 11)	550	NM_001363591	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
111431	chr19	3801101	3802030	+	0	NA	5' UTR (NM_002378, exon 1 of 14)	5' UTR (NM_002378, exon 1 of 14)	234	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
226477	chr9	71751521	71751780	+	0	NA	intron (NM_001135820, intron 1 of 22)	MER5A|DNA|hAT-Charlie	16863	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
66246	chr14	61349851	61349950	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	28457	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
127347	chr2	39122701	39123130	+	0	NA	intron (NM_001382394, intron 1 of 22)	intron (NM_001382394, intron 1 of 22)	-1864	NM_005633	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
153728	chr22	29302151	29302250	+	0	NA	Intergenic	Intergenic	-4823	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
127223	chr2	38607871	38608100	+	0	NA	Intergenic	Intergenic	-4949	NM_001142650	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
33471	chr10	119067851	119067950	+	0	NA	intron (NM_003750, intron 6 of 21)	AluSz|SINE|Alu	-7762	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
47836	chr12	6601821	6602300	+	0	NA	exon (NM_001363606, exon 4 of 40)	exon (NM_001363606, exon 4 of 40)	4391	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
109864	chr19	1233471	1234280	+	0	NA	intron (NM_152769, intron 7 of 8)	intron (NM_152769, intron 7 of 8)	4130	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
77537	chr15	84729301	84729530	+	0	NA	Intergenic	AluJo|SINE|Alu	-12955	NM_001271920	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
119098	chr19	39318421	39318880	+	0	NA	intron (NM_020862, intron 1 of 4)	MSR1|Satellite|Satellite	2213	NM_020862	57622		NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
159018	chr3	10557821	10558080	+	0	NA	intron (NM_001353564, intron 1 of 20)	intron (NM_001353564, intron 1 of 20)	-52364	NM_001001331	491		NM_001683	ENSG00000157087	ATP2B2	DFNA82|PMCA2|PMCA2a|PMCA2i	ATPase plasma membrane Ca2+ transporting 2	protein-coding
207672	chr7	45107221	45107680	+	0	NA	intron (NM_004749, intron 2 of 10)	intron (NM_004749, intron 2 of 10)	-1351	NR_002990	677795		NR_002990	ENSG00000200656	SNORA5B	ACA5b	small nucleolar RNA, H/ACA box 5B	snoRNA
236887	chrX	83065171	83065490	+	0	NA	Intergenic	L1HS|LINE|L1	-442960	NM_000307	5456		NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
42008	chr11	67404601	67405930	+	0	NA	intron (NM_001369495, intron 2 of 8)	intron (NM_001369495, intron 2 of 8)	1182	NM_001369496	374403		NM_198517	ENSG00000175463	TBC1D10C	CARABIN|EPI64C	TBC1 domain family member 10C	protein-coding
122392	chr19	49425301	49425650	+	0	NA	promoter-TSS (NM_001195256)	promoter-TSS (NM_001195256)	87	NM_001195256	100507003		NM_001195256	ENSG00000261949	GFY	Goofy	golgi associated olfactory signaling regulator	protein-coding
106889	chr18	24463601	24464000	+	0	NA	intron (NM_001143828, intron 1 of 1)	intron (NM_001143828, intron 1 of 1)	3163	NM_021624	59340		NM_021624	ENSG00000134489	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
210518	chr7	100219371	100220700	+	0	NA	intron (NM_024070, intron 2 of 5)	intron (NM_024070, intron 2 of 5)	787	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
108391	chr18	69883001	69883400	+	0	NA	intron (NM_006566, intron 4 of 6)	intron (NM_006566, intron 4 of 6)	64673	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
90958	chr17	2684251	2684550	+	0	NA	3' UTR (NM_000430, exon 11 of 11)	3' UTR (NM_000430, exon 11 of 11)	8519	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
200971	chr6	139323371	139324500	+	0	NA	Intergenic	Intergenic	-31937	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
151537	chr21	46500271	46500900	+	0	NA	intron (NM_001146115, intron 5 of 19)	intron (NM_001146115, intron 5 of 19)	38114	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
194273	chr6	32621301	32621850	+	0	NA	Intergenic	MER66B|LTR|ERV1	-15831	NM_002122	3117		NM_002122	ENSG00000196735	HLA-DQA1	CELIAC1|DQ-A1|DQA1|HLA-DQA|HLA-DQA1*|HLA-DQB1	major histocompatibility complex, class II, DQ alpha 1	protein-coding
139565	chr2	224934701	224934900	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	12249	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
142734	chr20	10304671	10305280	+	0	NA	intron (NM_130811, intron 7 of 7)	Tigger2b_Pri|DNA|TcMar-Tigger	-85469	NR_040710	100131208		NR_040710	ENSG00000227906	SNAP25-AS1	-	SNAP25 antisense RNA 1	ncRNA
7123	chr1	32177551	32177980	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1910	NM_175852	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
186372	chr5	134907651	134907750	+	0	NA	intron (NM_032151, intron 1 of 3)	AluSx3|SINE|Alu	2569	NM_032151	84105		NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
48472	chr12	9764351	9765460	+	0	NA	Intergenic	Intergenic	-4004	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
215956	chr8	8398701	8398950	+	0	NA	Intergenic	Intergenic	-12386	NR_163138	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
192577	chr6	25876271	25876430	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2107	NM_006632	10786		NM_006632	ENSG00000124564	SLC17A3	GOUT4|NPT4|UAQTL4	solute carrier family 17 member 3	protein-coding
104168	chr17	80411771	80412530	+	0	NA	intron (NR_029376, intron 1 of 1)	Harlequin-int|LTR|ERV1	-3017	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
39982	chr11	62614371	62614930	+	0	NA	TTS (NM_012200)	TTS (NM_012200)	1393	NM_000327	6094		NM_000327	ENSG00000149489	ROM1	ROM|ROSP1|RP7|TSPAN23	retinal outer segment membrane protein 1	protein-coding
10333	chr1	64909051	64909430	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	57309	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
152185	chr22	20103821	20104230	+	0	NA	intron (NM_022720, intron 9 of 13)	intron (NM_022720, intron 9 of 13)	10726	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
129882	chr2	73111901	73113640	+	0	NA	exon (NM_015470, exon 1 of 5)	exon (NM_015470, exon 1 of 5)	178	NM_001371272	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
188701	chr5	157302601	157302900	+	0	NA	intron (NM_014376, intron 6 of 30)	intron (NM_014376, intron 6 of 30)	33426	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
15702	chr1	151000521	151000980	+	0	NA	intron (NM_001376671, intron 3 of 8)	intron (NM_001376671, intron 3 of 8)	6152	NM_001040217	55793		NM_018379	ENSG00000143409	MINDY1	FAM63A|MINDY-1	MINDY lysine 48 deubiquitinase 1	protein-coding
46166	chr11	123082571	123083100	+	0	NA	intron (NM_024769, intron 5 of 6)	AluSz|SINE|Alu	-20699	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
115100	chr19	14283721	14284250	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-49758	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
16031	chr1	152217851	152218100	+	0	NA	exon (NM_001009931, exon 3 of 3)	exon (NM_001009931, exon 3 of 3)	6218	NM_001009931	388697		NM_001009931	ENSG00000197915	HRNR	FLG3|S100A16|S100a18	hornerin	protein-coding
215606	chr7	159070951	159071050	+	0	NA	intron (NR_130758, intron 4 of 12)	intron (NR_130758, intron 4 of 12)	26204	NM_001308259	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
113376	chr19	8767251	8767950	+	0	NA	Intergenic	Intergenic	36646	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
140864	chr2	237443221	237443580	+	0	NA	Intergenic	Intergenic	-29193	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
200308	chr6	132859551	132859650	+	0	NA	Intergenic	Intergenic	42381	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
158501	chr3	3107921	3108580	+	0	NA	intron (NM_175724, intron 2 of 9)	intron (NM_175724, intron 2 of 9)	2124	NM_001243099	3568		NM_000564	ENSG00000091181	IL5RA	CD125|CDw125|HSIL5R3|IL5R	interleukin 5 receptor subunit alpha	protein-coding
167997	chr3	136751201	136753600	+	0	NA	promoter-TSS (NM_005862)	promoter-TSS (NM_005862)	-22	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
172627	chr4	2525271	2525430	+	0	NA	Intergenic	AluSc8|SINE|Alu	-10025	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
45234	chr11	117969001	117969830	+	0	NA	Intergenic	Intergenic	-16979	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
212460	chr7	128457271	128458030	+	0	NA	3' UTR (NM_001098786, exon 2 of 2)	3' UTR (NM_001098786, exon 2 of 2)	1772	NM_013332	29923		NM_013332	ENSG00000135245	HILPDA	C7orf68|HIG-2|HIG2	hypoxia inducible lipid droplet associated	protein-coding
84966	chr16	31416071	31416230	+	0	NA	intron (NM_001318185, intron 18 of 29)	intron (NM_001318185, intron 18 of 29)	12210	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
194540	chr6	33316021	33316430	+	0	NA	exon (NM_001145338, exon 2 of 2)	exon (NM_001145338, exon 2 of 2)	1519	NM_005453	9278		NM_005453	ENSG00000236104	ZBTB22	BING1|ZBTB22A|ZNF297|ZNF297A|fru|fruitless	zinc finger and BTB domain containing 22	protein-coding
13465	chr1	114566821	114567350	+	0	NA	TTS (NM_005872)	TTS (NM_005872)	14530	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
2908	chr1	11680501	11681800	+	0	NA	promoter-TSS (NM_006341)	promoter-TSS (NM_006341)	-2	NM_006341	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
150189	chr21	39311201	39311500	+	0	NA	intron (NM_033656, intron 4 of 40)	AluJr|SINE|Alu	2282	NM_033656	54014		NM_018963	ENSG00000185658	BRWD1	C21orf107|CILD51|DCAF19|N143|WDR9|WRD9	bromodomain and WD repeat domain containing 1	protein-coding
181737	chr5	50694671	50695200	+	0	NA	intron (NM_024615, intron 2 of 25)	MLT2A2|LTR|ERVL	27521	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
204690	chr7	5508121	5508380	+	0	NA	intron (NM_024963, intron 1 of 4)	AluSc|SINE|Alu	5559	NM_001363441	80028		NM_024963	ENSG00000155034	FBXL18	Fbl18	F-box and leucine rich repeat protein 18	protein-coding
22011	chr1	209827251	209828680	+	0	NA	promoter-TSS (NM_014388)	promoter-TSS (NM_014388)	-7	NM_014388	27042		NM_014388	ENSG00000117597	UTP25	C1orf107|DEF|DIEXF|DJ434O14.5	UTP25 small subunit processome component	protein-coding
19770	chr1	182088051	182088530	+	0	NA	Intergenic	Intergenic	-26578	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
192320	chr6	21925471	21925630	+	0	NA	intron (NR_015410, intron 5 of 11)	intron (NR_015410, intron 5 of 11)	221643	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
104196	chr17	80468201	80468650	+	0	NA	3' UTR (NM_002522, exon 5 of 5)	3' UTR (NM_002522, exon 5 of 5)	8182	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
95280	chr17	35516221	35516630	+	0	NA	intron (NM_001363830, intron 2 of 4)	intron (NM_001363830, intron 2 of 4)	21436	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
212791	chr7	130145451	130146080	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	4034	NR_149034	100128325		NR_149033	ENSG00000229196	LINC03008	-	long intergenic non-protein coding RNA 3008	ncRNA
147086	chr20	53839051	53839840	+	0	NA	Intergenic	Intergenic	36264	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
45452	chr11	118450151	118450450	+	0	NA	intron (NM_001197104, intron 1 of 35)	intron (NM_001197104, intron 1 of 35)	13808	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
236506	chrX	71910671	71911780	+	0	NA	exon (NM_001013627, exon 1 of 8)	exon (NM_001013627, exon 1 of 8)	137	NM_001013627	340527		NM_001013627	ENSG00000204131	NHSL2	-	NHS like 2	protein-coding
122143	chr19	48865071	48865730	+	0	NA	intron (NM_020904, intron 3 of 19)	intron (NM_020904, intron 3 of 19)	3217	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
13490	chr1	114720401	114720900	+	0	NA	exon (NM_001007553, exon 17 of 20)	exon (NM_001007553, exon 17 of 20)	-3879	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
93673	chr17	19235621	19238600	+	0	NA	promoter-TSS (NM_014964)	promoter-TSS (NM_014964)	-267	NM_014964	22905		NM_014964	ENSG00000072134	EPN2	EHB21	epsin 2	protein-coding
199961	chr6	127939721	127940000	+	0	NA	Intergenic	Intergenic	-21229	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
148500	chr20	64072621	64073330	+	0	NA	TTS (NM_003195)	TTS (NM_003195)	4035	NR_106871	102466741		NR_106871	ENSG00000274034	MIR6813	hsa-mir-6813	microRNA 6813	ncRNA
134808	chr2	148209751	148209850	+	0	NA	intron (NM_018328, intron 3 of 14)	MSTB|LTR|ERVL-MaLR	-188196	NM_181742	5000		NM_002552	ENSG00000115947	ORC4	ORC4L|ORC4P	origin recognition complex subunit 4	protein-coding
183528	chr5	79784451	79784850	+	0	NA	intron (NM_153610, intron 9 of 12)	L1HS|LINE|L1	94814	NM_153610	202333		NM_153610	ENSG00000164309	CMYA5	C5orf10|SPRYD2|TRIM76	cardiomyopathy associated 5	protein-coding
76320	chr15	74389601	74389880	+	0	NA	intron (NR_146881, intron 2 of 3)	intron (NR_146881, intron 2 of 3)	10658	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
80066	chr16	1981421	1981850	+	0	NA	promoter-TSS (NM_001267721)	promoter-TSS (NM_001267721)	-166	NM_001267721	124056		NM_144603	ENSG00000196408	NOXO1	P41NOX|P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28	NADPH oxidase organizer 1	protein-coding
72285	chr15	30903221	30904180	+	0	NA	promoter-TSS (NM_014967)	promoter-TSS (NM_014967)	-152	NM_001146095	22909		NM_014967	ENSG00000198690	FAN1	KIAA1018|KMIN|MTMR15|hFAN1	FANCD2 and FANCI associated nuclease 1	protein-coding
222993	chr8	143266801	143268230	+	0	NA	promoter-TSS (NM_138465)	promoter-TSS (NM_138465)	70	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
81768	chr16	11502701	11502900	+	0	NA	intron (NM_001370704, intron 8 of 66)	AluSc8|SINE|Alu	24447	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
50426	chr12	47411551	47411650	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-3408	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
157206	chr22	43150521	43151800	+	0	NA	promoter-TSS (NM_001256531)	promoter-TSS (NM_001256531)	-399	NR_046308	706		NM_000714	ENSG00000100300	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|TSPO1|mDRC|pk18	translocator protein	protein-coding
34843	chr11	313551	315480	+	0	NA	intron (NM_003641, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	475	NM_003641	8519		NM_003641	ENSG00000185885	IFITM1	9-27|CD225|DSPA2a|IFI17|LEU13	interferon induced transmembrane protein 1	protein-coding
10654	chr1	70359271	70359430	+	0	NA	intron (NR_168352, intron 1 of 3)	intron (NR_168352, intron 1 of 3)	4539	NR_168349	11147		NM_007071	ENSG00000197568	ANKRD13C-DT	HHLA3	ANKRD13C divergent transcript	ncRNA
175917	chr4	80199901	80200100	+	0	NA	intron (NM_020226, intron 7 of 9)	intron (NM_020226, intron 7 of 9)	2497	NM_001099403	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
204946	chr7	6322801	6323400	+	0	NA	Intergenic	Intergenic	25867	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
128075	chr2	47868701	47869300	+	0	NA	intron (NM_001190274, intron 1 of 22)	ERVL-B4-int|LTR|ERVL	19719	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
143426	chr20	29788101	29788300	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-92184	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
26028	chr10	12348501	12350000	+	0	NA	promoter-TSS (NM_020397)	promoter-TSS (NM_020397)	-297	NM_020397	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
214822	chr7	151241701	151241900	+	0	NA	intron (NM_001003802, intron 8 of 13)	intron (NM_001003802, intron 8 of 13)	3379	NR_030407	768213		NR_030407	ENSG00000284191	MIR671	MIRN671|hsa-mir-671|mir-671	microRNA 671	ncRNA
29669	chr10	72035621	72036080	+	0	NA	Intergenic	Intergenic	52701	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
118407	chr19	35753151	35753550	+	0	NA	intron (NM_001369780, intron 6 of 8)	intron (NM_001369780, intron 6 of 8)	3679	NM_144617	126393		NM_144617	ENSG00000004776	HSPB6	HEL55|Hsp20|PPP1R91	heat shock protein family B (small) member 6	protein-coding
139104	chr2	218905671	218906030	+	0	NA	intron (NR_110238, intron 4 of 4)	MLT1H1|LTR|ERVL-MaLR	24787	NR_110238	101928537		NR_110238	ENSG00000228135	LINC01494	-	long intergenic non-protein coding RNA 1494	ncRNA
199855	chr6	127778921	127779380	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	76038	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
146395	chr20	49294851	49295150	+	0	NA	Intergenic	L1ME1|LINE|L1	14317	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
162942	chr3	49478371	49479280	+	0	NA	intron (NM_001177640, intron 2 of 3)	AluSg|SINE|Alu	8558	NM_004393	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
119066	chr19	39130621	39130880	+	0	NA	intron (NM_001014834, intron 1 of 7)	L2b|LINE|L2	4964	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
188639	chr5	157225471	157226180	+	0	NA	intron (NM_005546, intron 6 of 16)	intron (NM_005546, intron 6 of 16)	-40298	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
201291	chr6	144331621	144332500	+	0	NA	intron (NM_007124, intron 1 of 73)	L2b|LINE|L2	40323	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
3175	chr1	13692921	13693530	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-6963	NM_001135610	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
7316	chr1	32624971	32625130	+	0	NA	intron (NM_001366266, intron 4 of 4)	AluSx|SINE|Alu	25500	NM_001366278	339487		NM_178547	ENSG00000176261	ZBTB8OS	ARCH|ARCH2	zinc finger and BTB domain containing 8 opposite strand	protein-coding
193008	chr6	28221921	28222330	+	0	NA	Intergenic	LTR39|LTR|ERV1	-3150	NM_001199479	7746		NM_006299	ENSG00000137185	ZSCAN9	PRD51|ZNF193	zinc finger and SCAN domain containing 9	protein-coding
85531	chr16	53061671	53062030	+	0	NA	intron (NM_001308319, intron 1 of 38)	intron (NM_001308319, intron 1 of 38)	6859	NR_168120	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
195732	chr6	39228001	39228450	+	0	NA	intron (NM_003740, intron 1 of 4)	intron (NM_003740, intron 1 of 4)	1250	NM_003740	8645		NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding
81539	chr16	9106051	9106150	+	0	NA	intron (NM_014117, intron 3 of 3)	L2c|LINE|L2	14456	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
113349	chr19	8659451	8659950	+	0	NA	intron (NM_001378601, intron 1 of 2)	intron (NM_001378601, intron 1 of 2)	4123	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
203271	chr6	169705151	169705600	+	0	NA	3' UTR (NM_001029863, exon 1 of 1)	3' UTR (NM_001029863, exon 1 of 1)	3249	NM_001317342	387263		NM_001029863	ENSG00000185127	C6orf120	-	chromosome 6 open reading frame 120	protein-coding
217417	chr8	28382121	28382580	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	4110	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
233758	chrX	1397671	1398230	+	0	NA	intron (NR_130733, intron 1 of 2)	intron (NR_130733, intron 1 of 2)	925	NR_130733	751580		NR_130733	ENSG00000236871	LINC00106	CXYorf8|NCRNA00106	long intergenic non-protein coding RNA 106	ncRNA
136211	chr2	174577851	174578400	+	0	NA	intron (NM_001375837, intron 3 of 4)	MER20|DNA|hAT-Charlie	19679	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
234238	chrX	13077121	13077580	+	0	NA	Intergenic	MIRc|SINE|MIR	-32730	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
190826	chr6	1535221	1535580	+	0	NA	Intergenic	Intergenic	-70131	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
10215	chr1	62435921	62437830	+	0	NA	promoter-TSS (NM_003368)	promoter-TSS (NM_003368)	-174	NM_003368	7398		NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
180314	chr5	5522221	5522600	+	0	NA	Intergenic	LTR8A|LTR|ERV1	99733	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
232190	chr9	134293771	134294130	+	0	NA	TTS (NR_146518)	TTS (NR_146518)	1447	NR_146518	105376310		NR_146518	ENSG00000223729	LINC02247	-	long intergenic non-protein coding RNA 2247	ncRNA
59557	chr13	27351001	27351200	+	0	NA	Intergenic	LTR12|LTR|ERV1	-73519	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
50648	chr12	48788001	48788250	+	0	NA	intron (NM_015270, intron 1 of 21)	intron (NM_015270, intron 1 of 21)	964	NM_015270	112		NM_015270	ENSG00000174233	ADCY6	AC6|LCCS8	adenylate cyclase 6	protein-coding
8452	chr1	40695401	40695600	+	0	NA	intron (NM_001142590, intron 1 of 14)	AluSx|SINE|Alu	-3239	NR_024567	100130557		NR_024567		NFYC-AS1	0808y08y	NFYC antisense RNA 1	ncRNA
132696	chr2	108971701	108971900	+	0	NA	intron (NM_022336, intron 1 of 11)	MLT1F1|LTR|ERVL-MaLR	17420	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
3127	chr1	12432901	12433100	+	0	NA	intron (NM_018156, intron 64 of 68)	intron (NM_018156, intron 64 of 68)	-74246	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
22640	chr1	223719621	223720150	+	0	NA	intron (NM_001748, intron 2 of 20)	intron (NM_001748, intron 2 of 20)	7346	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
9190	chr1	45606601	45606800	+	0	NA	intron (NM_152298, intron 5 of 13)	intron (NM_152298, intron 5 of 13)	17354	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
219619	chr8	80111851	80111950	+	0	NA	intron (NM_001287144, intron 1 of 5)	MIRb|SINE|MIR	-31069	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
96152	chr17	39678971	39680180	+	0	NA	intron (NM_001291726, intron 2 of 6)	intron (NM_001291726, intron 2 of 6)	8482	NM_033419	93210		NM_033419	ENSG00000161395	PGAP3	AGLA546|CAB2|PERLD1|PP1498|hCOS16	post-GPI attachment to proteins phospholipase 3	protein-coding
4569	chr1	22058771	22059500	+	0	NA	intron (NM_044472, intron 1 of 5)	AluSp|SINE|Alu	6426	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
218296	chr8	42391381	42392750	+	0	NA	intron (NM_005662, intron 1 of 9)	CpG	185	NM_005662	7419		NM_005662	ENSG00000078668	VDAC3	HD-VDAC3|VDAC-3	voltage dependent anion channel 3	protein-coding
58374	chr12	131799821	131800080	+	0	NA	TTS (NM_004592)	TTS (NM_004592)	-28443	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
64193	chr14	23009501	23011150	+	0	NA	promoter-TSS (NM_001130708)	promoter-TSS (NM_001130708)	-182	NM_001282968	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
42173	chr11	67859571	67860000	+	0	NA	Intergenic	Intergenic	-54449	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
184883	chr5	112681521	112681780	+	0	NA	intron (NR_104673, intron 1 of 2)	intron (NR_104673, intron 1 of 2)	1238	NR_104673	102467216		NR_104673		LOC102467216	-	uncharacterized LOC102467216	ncRNA
111368	chr19	3695901	3696950	+	0	NA	intron (NM_001300849, intron 1 of 16)	L2a|LINE|L2	4043	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
37577	chr11	19240751	19242450	+	0	NA	promoter-TSS (NM_024680)	promoter-TSS (NM_024680)	20	NM_001256371	79733		NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
18202	chr1	160878651	160879500	+	0	NA	intron (NM_017625, intron 7 of 7)	intron (NM_017625, intron 7 of 7)	6105	NM_017625	55600		NM_017625	ENSG00000179914	ITLN1	HL-1|HL1|INTL|ITLN|LFR|hIntL|omentin	intelectin 1	protein-coding
125328	chr2	10793001	10793530	+	0	NA	intron (NM_001282706, intron 5 of 13)	intron (NM_001282706, intron 5 of 13)	19520	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
219787	chr8	81172121	81172780	+	0	NA	Intergenic	AluJb|SINE|Alu	-60382	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
154181	chr22	31331071	31331430	+	0	NA	intron (NM_014323, intron 3 of 4)	intron (NM_014323, intron 3 of 4)	-4099	NR_110542	101929760		NR_110542	ENSG00000228839	PIK3IP1-DT	PIK3IP1-AS1	PIK3IP1 divergent transcript	ncRNA
29871	chr10	72624871	72625030	+	0	NA	intron (NM_006077, intron 1 of 11)	intron (NM_006077, intron 1 of 11)	1129	NM_001195518	10367		NM_006077	ENSG00000107745	MICU1	CALC|CBARA1|EFHA3|MPXPS|ara CALC	mitochondrial calcium uptake 1	protein-coding
73431	chr15	43124701	43125100	+	0	NA	Intergenic	AluSz|SINE|Alu	-8215	NM_001347009	80021		NM_024956	ENSG00000137842	TMEM62	-	transmembrane protein 62	protein-coding
187185	chr5	140650601	140651000	+	0	NA	intron (NM_006083, intron 2 of 19)	AluSq2|SINE|Alu	2956	NR_037428	100500820		NR_037428	ENSG00000284325	MIR3655	-	microRNA 3655	ncRNA
23705	chr1	231628301	231628750	+	0	NA	intron (NM_001164556, intron 1 of 4)	MIRb|SINE|MIR	1710	NM_001164555	27185		NM_018662	ENSG00000162946	DISC1	C1orf136|SCZD9	DISC1 scaffold protein	protein-coding
132940	chr2	111448721	111449180	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	46211	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
58	chr1	270851	271500	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-64578	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
103455	chr17	78312771	78312930	+	0	NA	Intergenic	Intergenic	-34358	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
29178	chr10	68904071	68904230	+	0	NA	intron (NM_024045, intron 1 of 14)	AluSq2|SINE|Alu	2835	NM_024045	79009		NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
55633	chr12	107087151	107087450	+	0	NA	intron (NM_004075, intron 1 of 12)	intron (NM_004075, intron 1 of 12)	6249	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
14832	chr1	146317821	146318850	+	0	NA	Intergenic	Intergenic	20344	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
217591	chr8	29555251	29556380	+	0	NA	Intergenic	Intergenic	192294	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
107090	chr18	35040701	35042000	+	0	NA	promoter-TSS (NM_001256420)	promoter-TSS (NM_001256420)	-63	NR_046177	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
2434	chr1	9607101	9607500	+	0	NA	intron (NM_001130924, intron 6 of 10)	intron (NM_001130924, intron 6 of 10)	18389	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
67819	chr14	73814101	73814300	+	0	NA	Intergenic	L1MC5|LINE|L1	15935	NR_135238	100506498		NR_135238	ENSG00000258586	LINC02274	-	long intergenic non-protein coding RNA 2274	ncRNA
97698	chr17	44318271	44319200	+	0	NA	TTS (NR_159401)	TTS (NR_159401)	6088	NR_159404	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
65370	chr14	50542621	50543250	+	0	NA	intron (NM_001127713, intron 1 of 13)	ERVL-E-int|LTR|ERVL	9853	NM_001127713	51062		NM_015915	ENSG00000198513	ATL1	AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1	atlastin GTPase 1	protein-coding
3012	chr1	12069801	12070530	+	0	NA	intron (NM_001281430, intron 1 of 13)	L2b|LINE|L2	6788	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
126553	chr2	28615521	28616200	+	0	NA	intron (NM_153021, intron 44 of 57)	intron (NM_153021, intron 44 of 57)	49503	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
144180	chr20	34108271	34108430	+	0	NA	intron (NM_003908, intron 1 of 8)	intron (NM_003908, intron 1 of 8)	3893	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
129750	chr2	70983601	70983800	+	0	NA	intron (NM_001115116, intron 5 of 5)	intron (NM_001115116, intron 5 of 5)	5070	NM_024933	79998		NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
205637	chr7	22675951	22676680	+	0	NA	Intergenic	L3|LINE|CR1	-10782	NR_122075	401312		NR_122075	ENSG00000105889	LOC401312	-	uncharacterized LOC401312	ncRNA
135639	chr2	168244121	168244800	+	0	NA	intron (NM_013233, intron 1 of 17)	UCON2|DNA?|DNA?	3135	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
26156	chr10	14173721	14174850	+	0	NA	intron (NR_134578, intron 2 of 3)	(CT)n|Simple_repeat|Simple_repeat	100001	NR_120638	101928453		NR_120638		LOC101928453	-	uncharacterized LOC101928453	ncRNA
19250	chr1	172672421	172673400	+	0	NA	Intergenic	Intergenic	13807	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
177456	chr4	113617271	113617430	+	0	NA	intron (NM_172129, intron 3 of 17)	AluSz|SINE|Alu	144388	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
74229	chr15	56608171	56608330	+	0	NA	Intergenic	L1MEf|LINE|L1	125836	NM_001288589	54816		NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
30708	chr10	80662651	80662980	+	0	NA	Intergenic	Intergenic	13018	NR_155749	105378386		NR_155749	ENSG00000231082	LINC02655	-	long intergenic non-protein coding RNA 2655	ncRNA
68350	chr14	77655001	77655250	+	0	NA	Intergenic	Intergenic	-38488	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
31006	chr10	88553121	88553500	+	0	NA	intron (NM_018363, intron 4 of 6)	intron (NM_018363, intron 4 of 6)	30008	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
139	chr1	518671	518830	+	0	NA	Intergenic	Intergenic	-23305	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
111396	chr19	3759251	3759630	+	0	NA	intron (NM_004886, intron 3 of 10)	intron (NM_004886, intron 3 of 10)	2252	NM_004886	9546		NM_004886	ENSG00000011132	APBA3	MGC:15815|X11L2|mint3	amyloid beta precursor protein binding family A member 3	protein-coding
27919	chr10	41903171	41903600	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	464660	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
76090	chr15	72488851	72489350	+	0	NA	intron (NM_005744, intron 1 of 13)	AluJb|SINE|Alu	14770	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
151316	chr21	45553501	45553980	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	9285	NM_001352511	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
147534	chr20	59401651	59402000	+	0	NA	Intergenic	Intergenic	101214	NM_001302456	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
193464	chr6	30514501	30515180	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-1426	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
82902	chr16	21638121	21639180	+	0	NA	TTS (NM_005849).2	TTS (NM_005849).2	13958	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
238899	chrX	154621071	154621400	+	0	NA	Intergenic	Intergenic	-1943	NM_139250	246100		NM_139250	ENSG00000268651	CTAG1A	CT6.1|ESO1|LAGE-2|LAGE2A|NY-ESO-1	cancer/testis antigen 1A	protein-coding
236381	chrX	71097651	71097750	+	0	NA	intron (NM_005938, intron 1 of 2)	intron (NM_005938, intron 1 of 2)	1849	NM_001170931	4303		NM_005938	ENSG00000184481	FOXO4	AFX|AFX1|MLLT7	forkhead box O4	protein-coding
108897	chr18	79422501	79423030	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	22466	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
57291	chr12	121644601	121644800	+	0	NA	Intergenic	Intergenic	18150	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
82371	chr16	16006151	16006450	+	0	NA	intron (NM_004996, intron 1 of 30)	FRAM|SINE|Alu	56684	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
98780	chr17	48136221	48136730	+	0	NA	intron (NM_001075099, intron 12 of 12)	MLT1J|LTR|ERVL-MaLR	20036	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
214795	chr7	151168001	151168830	+	0	NA	promoter-TSS (NM_001098834)	promoter-TSS (NM_001098834)	-867	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
44487	chr11	105071301	105071800	+	0	NA	promoter-TSS (NR_131905)	promoter-TSS (NR_131905)	-20	NR_131905	440067		NR_131905		CASP1P2	-	caspase 1 pseudogene 2	pseudo
34419	chr10	132404471	132404630	+	0	NA	intron (NM_138499, intron 1 of 2)	intron (NM_138499, intron 1 of 2)	7350	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
94126	chr17	28229271	28229430	+	0	NA	Intergenic	L2c|LINE|L2	2787	NR_003064	23615		NM_021093	ENSG00000290671	PYY2	-	peptide YY 2 (pseudogene)	pseudo
99837	chr17	55295851	55296230	+	0	NA	intron (NM_002126, intron 2 of 3)	intron (NM_002126, intron 2 of 3)	29818	NM_001330375	3131		NM_002126	ENSG00000108924	HLF	-	HLF transcription factor, PAR bZIP family member	protein-coding
213324	chr7	135186351	135186650	+	0	NA	intron (NR_156130, intron 13 of 13)	intron (NR_156130, intron 13 of 13)	-15674	NM_001243754	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
174144	chr4	36237451	36237550	+	0	NA	intron (NR_146894, intron 1 of 32)	MSTB|LTR|ERVL-MaLR	6439	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
158386	chr22	50503121	50503380	+	0	NA	3' UTR (NM_001363816, exon 14 of 14)	3' UTR (NM_001363816, exon 14 of 14)	4452	NM_033200	91289		NM_033200	ENSG00000100258	LMF2	TMEM112B|TMEM153	lipase maturation factor 2	protein-coding
204979	chr7	6393151	6393850	+	0	NA	intron (NM_006908, intron 3 of 5)	intron (NM_006908, intron 3 of 5)	18973	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
134977	chr2	152573251	152573450	+	0	NA	intron (NM_052905, intron 6 of 25)	intron (NM_052905, intron 6 of 25)	144111	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
105563	chr18	63671	63900	+	0	NA	Intergenic	(CCCTAA)n|Simple_repeat|Simple_repeat	-14228	NM_001358689	260334		NM_001358689	ENSG00000173213	TUBB8B	TUBB8P12	tubulin beta 8B	protein-coding
76065	chr15	72365901	72366500	+	0	NA	intron (NM_001318825, intron 1 of 13)	L2b|LINE|L2	9814	NR_134869	3073		NM_000520	ENSG00000213614	HEXA	TSD	hexosaminidase subunit alpha	protein-coding
69971	chr14	99807451	99807750	+	0	NA	intron (NM_001375412, intron 1 of 20)	LTR33|LTR|ERVL	14187	NM_001375412	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
26398	chr10	17004071	17004230	+	0	NA	intron (NM_001081, intron 28 of 66)	intron (NM_001081, intron 28 of 66)	125661	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
48734	chr12	10713301	10713680	+	0	NA	intron (NM_003651, intron 4 of 9)	intron (NM_003651, intron 4 of 9)	9833	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
72496	chr15	33047051	33047350	+	0	NA	intron (NM_001277313, intron 6 of 20)	MER41-int|LTR|ERV1	20974	NM_001103184	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
116539	chr19	18203061	18205700	+	0	NA	promoter-TSS (NR_134910)	promoter-TSS (NR_134910)	-338	NM_002866	5864		NM_002866	ENSG00000105649	RAB3A	-	RAB3A, member RAS oncogene family	protein-coding
91983	chr17	7426001	7426400	+	0	NA	exon (NM_175734, exon 3 of 3)	exon (NM_175734, exon 3 of 3)	584	NM_175734	201243		NM_175734	ENSG00000184560	SPEM2	C17orf74	SPEM family member 2	protein-coding
197777	chr6	87652971	87653330	+	0	NA	exon (NM_001197259, exon 13 of 19)	exon (NM_001197259, exon 13 of 19)	49083	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
69302	chr14	93114601	93116900	+	0	NA	intron (NM_014216, intron 1 of 10).2	CpG-7569	175	NM_001142594	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
25462	chr10	6643771	6644350	+	0	NA	Intergenic	Intergenic	8990	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
169470	chr3	169147271	169147700	+	0	NA	promoter-TSS (NM_001366468)	promoter-TSS (NM_001366468)	-14	NM_001366469	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
124727	chr2	4410121	4410250	+	0	NA	Intergenic	(CCTC)n|Simple_repeat|Simple_repeat	246037	NR_034134	727982		NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
57562	chr12	122222621	122223630	+	0	NA	intron (NM_001278303, intron 1 of 4)	L2a|LINE|L2	2646	NM_001278304	56616		NM_019887	ENSG00000184047	DIABLO	DFNA64|SMAC	diablo IAP-binding mitochondrial protein	protein-coding
30342	chr10	77637521	77637980	+	0	NA	promoter-TSS (NM_001271522)	promoter-TSS (NM_001271522)	58	NM_001161353	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
55354	chr12	104137301	104139100	+	0	NA	promoter-TSS (NM_006166)	promoter-TSS (NM_006166)	10	NM_006166	4801		NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	nuclear transcription factor Y subunit beta	protein-coding
24122	chr1	235734301	235734650	+	0	NA	intron (NM_001301365, intron 32 of 52)	intron (NM_001301365, intron 32 of 52)	-83721	NM_001098721	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
113043	chr19	8003451	8003900	+	0	NA	intron (NM_001419, intron 1 of 5)	AluY|SINE|Alu	1966	NM_001419	1994		NM_001419	ENSG00000066044	ELAVL1	ELAV1|HUR|Hua|MelG	ELAV like RNA binding protein 1	protein-coding
90241	chr17	751251	753050	+	0	NA	promoter-TSS (NR_024120)	promoter-TSS (NR_024120)	114	NM_015721	50628		NM_015721	ENSG00000179409	GEMIN4	HC56|HCAP1|HHRF-1|NEDMCR|p97	gem nuclear organelle associated protein 4	protein-coding
180087	chr5	1115851	1116150	+	0	NA	Intergenic	Intergenic	-3937	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
108436	chr18	69980551	69980850	+	0	NA	Intergenic	Intergenic	-23901	NM_006566	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
132668	chr2	108768701	108768930	+	0	NA	intron (NM_006267, intron 20 of 28)	AluSz|SINE|Alu	-17935	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
99014	chr17	48826621	48826880	+	0	NA	Intergenic	AluY|SINE|Alu	-4285	NM_001261390	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
71694	chr15	20224521	20224980	+	0	NA	Intergenic	Intergenic	-57994	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
135701	chr2	168948251	168948980	+	0	NA	intron (NM_003742, intron 19 of 27)	L2b|LINE|L2	47324	NM_001081686	57818		NM_021176	ENSG00000152254	G6PC2	IGRP	glucose-6-phosphatase catalytic subunit 2	protein-coding
182206	chr5	56835421	56836080	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	20201	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
69748	chr14	98965101	98965700	+	0	NA	Intergenic	LTR33|LTR|ERVL	253787	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
49659	chr12	29088661	29088830	+	0	NA	Intergenic	L1M2|LINE|L1	-60533	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
171873	chr4	766951	767250	+	0	NA	3' UTR (NM_006315, exon 11 of 11)	3' UTR (NM_006315, exon 11 of 11)	14748	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
95466	chr17	36188001	36188200	+	0	NA	Intergenic	Intergenic	8206	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
218268	chr8	42246901	42247450	+	0	NA	Intergenic	THE1D-int|LTR|ERVL-MaLR	23786	NR_125823	101929897		NR_125823	ENSG00000253408	IKBKB-DT	ALAL-1|IKBKBAS	IKBKB divergent transcript	ncRNA
104072	chr17	80222301	80223500	+	0	NA	intron (NM_001166348, intron 3 of 16)	intron (NM_001166348, intron 3 of 16)	2473	NM_001166348	284129		NM_173626	ENSG00000181045	SLC26A11	-	solute carrier family 26 member 11	protein-coding
11847	chr1	92964701	92965680	+	0	NA	Intergenic	LTR52|LTR|ERVL	-3668	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
179848	chr5	501601	501800	+	0	NA	intron (NM_001284351, intron 1 of 16)	intron (NM_001284351, intron 1 of 16)	22749	NM_001284351	6550		NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
63482	chr13	114160821	114161280	+	0	NA	Intergenic	Intergenic	-28427	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
127841	chr2	45064971	45065130	+	0	NA	Intergenic	L1PA2|LINE|L1	-55598	NM_016932	10736		NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
17994	chr1	160520811	160521700	+	0	NA	intron (NM_001184714, intron 1 of 7)	intron (NM_001184714, intron 1 of 7)	2000	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
168170	chr3	139935171	139935330	+	0	NA	promoter-TSS (NM_022131)	promoter-TSS (NM_022131)	65	NM_022131	64084		NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
33750	chr10	122435151	122435500	+	0	NA	non-coding (NR_165160, exon 14 of 14)	non-coding (NR_165160, exon 14 of 14)	18360	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
71160	chr14	105026071	105026500	+	0	NA	Intergenic	Intergenic	-5202	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
25590	chr10	8045831	8046230	+	0	NA	Intergenic	Intergenic	6461	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
141809	chr20	323671	324800	+	0	NA	intron (NR_109990, intron 1 of 2)	(CCCCGCC)n|Simple_repeat|Simple_repeat	1017	NR_109990	100507459		NR_109990	ENSG00000225377	NRSN2-AS1	-	NRSN2 antisense RNA 1	ncRNA
233243	chr9	137258021	137258700	+	0	NA	intron (NM_015456, intron 4 of 12)	AluJb|SINE|Alu	3033	NM_015456	25920		NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
4254	chr1	19613251	19613550	+	0	NA	intron (NM_001204088, intron 2 of 4)	L2b|LINE|L2	5593	NR_077246	644068		NR_077246		RPS14P3	RPS14_1_16	ribosomal protein S14 pseudogene 3	pseudo
187269	chr5	141513951	141515380	+	0	NA	TTS (NM_001079812)	TTS (NM_001079812)	25424	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
184216	chr5	95964671	95965200	+	0	NA	intron (NR_130776, intron 1 of 4)	intron (NR_130776, intron 1 of 4)	2934	NR_130776	101929710		NR_130776	ENSG00000251314	LOC101929710	-	uncharacterized LOC101929710	ncRNA
157039	chr22	42568771	42569150	+	0	NA	intron (NM_014509, intron 9 of 11)	AluSx1|SINE|Alu	13051	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
206534	chr7	35039951	35040050	+	0	NA	Intergenic	Intergenic	-1959	NM_015283	23333		NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like C-mannosyltransferase 1	protein-coding
71408	chr14	105536151	105536450	+	0	NA	Intergenic	Intergenic	4445	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
116300	chr19	17775271	17775900	+	0	NA	intron (NR_169248, intron 15 of 28)	intron (NR_169248, intron 15 of 28)	-19553	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
114974	chr19	14023551	14023730	+	0	NA	Intergenic	Intergenic	-4508	NM_001311197	117579		NM_080864	ENSG00000171136	RLN3	H3|RXN3|ZINS4|insl7	relaxin 3	protein-coding
140136	chr2	231556921	231557180	+	0	NA	Intergenic	Intergenic	-26605	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
88109	chr16	81552271	81552630	+	0	NA	intron (NM_030629, intron 1 of 20)	MLT1D|LTR|ERVL-MaLR	18548	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
103329	chr17	77974501	77974730	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-29622	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
228527	chr9	100445201	100445400	+	0	NA	intron (NM_001198807, intron 3 of 3)	intron (NM_001198807, intron 3 of 3)	3394	NM_001198812	100526694		NM_001198812		MSANTD3-TMEFF1	C9orf2|C9orf3-TMEFF1|C9orf30-TMEFF1|H7365|TMEFF1|TR-1	MSANTD3-TMEFF1 readthrough	protein-coding
233327	chr9	137434451	137434980	+	0	NA	TTS (NM_001256067)	TTS (NM_001256067)	6642	NM_198585	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
71195	chr14	105061401	105062450	+	0	NA	intron (NM_001278694, intron 1 of 4)	intron (NM_001278694, intron 1 of 4)	3505	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
211893	chr7	111486651	111486750	+	0	NA	intron (NM_001350964, intron 4 of 4)	intron (NM_001350964, intron 4 of 4)	75792	NM_001350960	83943		NM_032549	ENSG00000184903	IMMP2L	IMMP2L-IT1|IMP2|IMP2-LIKE	inner mitochondrial membrane peptidase subunit 2	protein-coding
25565	chr10	7666501	7666980	+	0	NA	intron (NM_030569, intron 1 of 13)	CpG	226	NM_030569	80760		NM_030569	ENSG00000123243	ITIH5	ITI-HC5|PP14776	inter-alpha-trypsin inhibitor heavy chain 5	protein-coding
138068	chr2	201780371	201782250	+	0	NA	promoter-TSS (NM_001135745)	promoter-TSS (NM_001135745)	-377	NM_020919	57679		NM_020919	ENSG00000003393	ALS2	ALS2CR6|ALSJ|IAHSP|PLSJ	alsin Rho guanine nucleotide exchange factor ALS2	protein-coding
185172	chr5	119352501	119352700	+	0	NA	intron (NM_001286814, intron 1 of 1)	intron (NM_001286814, intron 1 of 1)	-2173	NM_001286813	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
6431	chr1	28194101	28195030	+	0	NA	promoter-TSS (NM_001164722)	promoter-TSS (NM_001164722)	-629	NM_001164721	5724		NM_000952	ENSG00000169403	PTAFR	PAFR	platelet activating factor receptor	protein-coding
27849	chr10	39986451	39986550	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1289904	NR_045000	399746		NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
190922	chr6	2857271	2858400	+	0	NA	intron (NR_033851, intron 1 of 1)	intron (NR_033851, intron 1 of 1)	-3728	NR_039788	100616285		NR_039788	ENSG00000266750	MIR4645	mir-4645	microRNA 4645	ncRNA
90440	chr17	1362401	1363700	+	0	NA	intron (NR_024058, intron 3 of 6)	intron (NR_024058, intron 3 of 6)	37172	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
124671	chr2	3243671	3243900	+	0	NA	intron (NM_001330531, intron 3 of 7)	intron (NM_001330531, intron 3 of 7)	-117759	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
32098	chr10	101146451	101147730	+	0	NA	Intergenic	Intergenic	-5824	NR_130724	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
84981	chr16	31454651	31454750	+	0	NA	Intergenic	AluJb|SINE|Alu	-3604	NM_001288767	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
197621	chr6	83057771	83057950	+	0	NA	exon (NM_001304437, exon 2 of 10)	exon (NM_001304437, exon 2 of 10)	7981	NM_001350602	90025		NM_198920	ENSG00000118420	UBE3D	C6orf157|H10BH|UBE2CBP|YJR141W	ubiquitin protein ligase E3D	protein-coding
152137	chr22	19973701	19973900	+	0	NA	intron (NM_001670, intron 12 of 19)	CpG-18768	10047	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
118595	chr19	36570271	36570630	+	0	NA	intron (NM_001145650, intron 2 of 4)	MER77|LTR|ERVL	-2620	NR_110703	101927599		NR_110703	ENSG00000233527	ZNF529-AS1	-	ZNF529 antisense RNA 1	ncRNA
158515	chr3	3136271	3136630	+	0	NA	intron (NM_182916, intron 2 of 7)	intron (NM_182916, intron 2 of 7)	9510	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
11917	chr1	93440201	93440400	+	0	NA	Intergenic	Intergenic	-7818	NM_017737	54874		NM_017737	ENSG00000137942	FNBP1L	C1orf39|TOCA1	formin binding protein 1 like	protein-coding
43875	chr11	88335071	88335580	+	0	NA	intron (NM_148170, intron 1 of 3)	AluJr|SINE|Alu	2411	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
1149	chr1	2191121	2192330	+	0	NA	TTS (NM_001256946)	TTS (NM_001256946)	1927	NR_168005	112268219		NR_168005		LOC112268219	-	uncharacterized LOC112268219	ncRNA
49701	chr12	31054101	31054300	+	0	NA	intron (NR_038927, intron 2 of 2)	Charlie9|DNA|hAT-Charlie	19647	NR_038927	100506660		NR_038927	ENSG00000245614	DDX11-AS1	CONCR|SCAT4	DDX11 antisense RNA 1	ncRNA
209630	chr7	77727901	77728750	+	0	NA	intron (NM_198467, intron 1 of 7)	HAL1|LINE|L1	-30980	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
174775	chr4	47835601	47835800	+	0	NA	intron (NR_125881, intron 1 of 2)	intron (NR_125881, intron 1 of 2)	2367	NM_006587	10699		NM_006587	ENSG00000145244	CORIN	ATC2|CMH30|CRN|Lrp4|PEE5|TMPRSS10	corin, serine peptidase	protein-coding
57465	chr12	122006221	122007030	+	0	NA	Intergenic	Intergenic	-15259	NM_020993	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
125757	chr2	23230351	23230450	+	0	NA	Intergenic	L1PA2|LINE|L1	-154779	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
109136	chr18	80178921	80179530	+	0	NA	TTS (NR_028340)	TTS (NR_028340)	31301	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
44764	chr11	112220801	112221000	+	0	NA	Intergenic	Intergenic	-5528	NM_000317	5805		NM_000317	ENSG00000150787	PTS	PTPS	6-pyruvoyltetrahydropterin synthase	protein-coding
77617	chr15	85399971	85400330	+	0	NA	intron (NM_007200, intron 1 of 36)	AluJr4|SINE|Alu	19547	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
87025	chr16	68267721	68268400	+	0	NA	intron (NM_003983, intron 2 of 10)	MER21B|LTR|ERVL	3534	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
86383	chr16	66601971	66602580	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1721	NM_144601	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
215780	chr8	2139821	2140230	+	0	NA	intron (NM_003970, intron 32 of 36).2	L1MB3|LINE|L1	63436	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
63585	chr14	20473451	20473980	+	0	NA	intron (NM_000270, intron 2 of 5)	AluSg|SINE|Alu	4309	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
236835	chrX	79220401	79221080	+	0	NA	Intergenic	Intergenic	76052	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
151585	chr21	46637951	46638780	+	0	NA	intron (NM_206962, intron 3 of 11)	L1ME3Cz|LINE|L1	2691	NM_001242866	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
121270	chr19	46704351	46705450	+	0	NA	intron (NM_001079881, intron 4 of 18)	intron (NM_001079881, intron 4 of 18)	4454	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
62610	chr13	100521521	100522330	+	0	NA	intron (NM_001352611, intron 20 of 21)	intron (NM_001352611, intron 20 of 21)	11877	NM_033110	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
137430	chr2	196640821	196641250	+	0	NA	intron (NM_001353339, intron 1 of 22)	AluY|SINE|Alu	1320	NM_001080539	284992		NM_173466	ENSG00000144395	CCDC150	-	coiled-coil domain containing 150	protein-coding
191177	chr6	5030551	5030980	+	0	NA	intron (NR_126018, intron 1 of 1)	intron (NR_126018, intron 1 of 1)	793	NR_126018	100129461		NR_126015	ENSG00000272142	LYRM4-AS1	-	LYRM4 antisense RNA 1	ncRNA
84792	chr16	31035371	31035730	+	0	NA	intron (NM_001272096, intron 6 of 11)	intron (NM_001272096, intron 6 of 11)	1992	NM_004604	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
160875	chr3	33442201	33442400	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1895	NM_014517	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
80081	chr16	1997021	1997280	+	0	NA	TTS (NM_178167)	TTS (NM_178167)	7180	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
57490	chr12	122087201	122088180	+	0	NA	intron (NM_014938, intron 1 of 16)	L2a|LINE|L2	8934	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
160340	chr3	27717151	27717600	+	0	NA	exon (NM_005442, exon 6 of 6)	exon (NM_005442, exon 6 of 6)	4948	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
97404	chr17	43389001	43390280	+	0	NA	promoter-TSS (NR_027412)	promoter-TSS (NR_027412)	-742	NR_027413	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
181785	chr5	50787031	50787150	+	0	NA	intron (NM_024615, intron 9 of 25)	L2a|LINE|L2	119676	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
109614	chr19	943771	944130	+	0	NA	intron (NM_005224, intron 3 of 8)	L2b|LINE|L2	17915	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
18862	chr1	167875821	167875900	+	0	NA	intron (NM_001297772, intron 12 of 32)	AluY|SINE|Alu	38274	NM_001167749	55811		NM_018417	ENSG00000143199	ADCY10	HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC	adenylate cyclase 10	protein-coding
106767	chr18	23663551	23663650	+	0	NA	promoter-TSS (NM_001308238)	promoter-TSS (NM_001308238)	-689	NM_001308238	147463		NM_173505	ENSG00000154065	ANKRD29	-	ankyrin repeat domain 29	protein-coding
11725	chr1	91883371	91883980	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	2476	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
145195	chr20	38887201	38887400	+	0	NA	intron (NM_001172735, intron 2 of 9)	MER91C|DNA|hAT-Tip100	-39117	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
236769	chrX	78957451	78958180	+	0	NA	intron (NM_014499, intron 3 of 3)	intron (NM_014499, intron 3 of 3)	12424	NM_001324225	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
24274	chr1	236425251	236425650	+	0	NA	intron (NM_080738, intron 3 of 5)	intron (NM_080738, intron 3 of 5)	30037	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
140713	chr2	234414701	234415100	+	0	NA	Intergenic	Intergenic	39695	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
165477	chr3	99787821	99787900	+	0	NA	intron (NM_001850, intron 3 of 4)	(AC)n|Simple_repeat|Simple_repeat	-30002	NM_032359	84319		NM_032359	ENSG00000184220	CMSS1	C3orf26	cms1 ribosomal small subunit homolog	protein-coding
107483	chr18	47168751	47169280	+	0	NA	intron (NM_016097, intron 1 of 2)	L1MB8|LINE|L1	7349	NM_016097	51124		NM_016097	ENSG00000134049	IER3IP1	HSPC039|MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
19451	chr1	174814721	174815230	+	0	NA	intron (NM_001366447, intron 19 of 20)	AluSz|SINE|Alu	15237	NM_001366454	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
4982	chr1	24202721	24202980	+	0	NA	intron (NR_027087, intron 2 of 2)	intron (NR_027087, intron 2 of 2)	2610	NR_027087	284632		NR_027087	ENSG00000230023	LINC02800	-	long intergenic non-protein coding RNA 2800	ncRNA
110463	chr19	2010121	2010780	+	0	NA	intron (NM_017797, intron 1 of 8)	intron (NM_017797, intron 1 of 8)	5264	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
85611	chr16	53773271	53773430	+	0	NA	intron (NM_001363897, intron 1 of 7)	intron (NM_001363897, intron 1 of 7)	69194	NM_001080432	79068		NM_001080432	ENSG00000140718	FTO	ALKBH9|BMIQ14|GDFD|IFEX9	FTO alpha-ketoglutarate dependent dioxygenase	protein-coding
81619	chr16	10770901	10771580	+	0	NA	intron (NR_134905, intron 5 of 7)	L1MB3|LINE|L1	27371	NM_001323597	4682		NM_002484	ENSG00000103274	NUBP1	CIAO5|NBP|NBP1|NBP35	NUBP iron-sulfur cluster assembly factor 1, cytosolic	protein-coding
183153	chr5	75059871	75060830	+	0	NA	Intergenic	Intergenic	-7792	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
73230	chr15	41663471	41663630	+	0	NA	intron (NM_001164273, intron 1 of 23)	AluSz6|SINE|Alu	3138	NM_001080541	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
129578	chr2	70043451	70043950	+	0	NA	intron (NR_033872, intron 6 of 10)	intron (NR_033872, intron 6 of 10)	43315	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
177571	chr4	119407001	119407200	+	0	NA	non-coding (NR_037596, exon 3 of 3)	non-coding (NR_037596, exon 3 of 3)	3560	NR_037596	401149		NR_037596		LINC01061	KIKAT	long intergenic non-protein coding RNA 1061	ncRNA
220140	chr8	94893471	94893830	+	0	NA	intron (NM_057749, intron 4 of 11)	intron (NM_057749, intron 4 of 11)	1604	NM_057749	9134		NM_004702	ENSG00000175305	CCNE2	CYCE2	cyclin E2	protein-coding
188715	chr5	157322571	157322730	+	0	NA	intron (NM_014376, intron 15 of 30)	intron (NM_014376, intron 15 of 30)	23027	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
120646	chr19	45073471	45073650	+	0	NA	intron (NM_145288, intron 2 of 2)	AluYm1|SINE|Alu	-2067	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
41326	chr11	65901951	65903730	+	0	NA	Intergenic	AluSg|SINE|Alu	-2314	NR_125339	8061		NM_005438	ENSG00000175592	FOSL1	FRA|FRA1|fra-1	FOS like 1, AP-1 transcription factor subunit	protein-coding
237414	chrX	119618101	119618500	+	0	NA	3' UTR (NM_015129, exon 10 of 10)	3' UTR (NM_015129, exon 10 of 10)	-11876	NR_163972	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
162879	chr3	49376471	49376780	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluY|SINE|Alu	-18025	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
121543	chr19	47245951	47246250	+	0	NA	Intergenic	AluY|SINE|Alu	-10425	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
29718	chr10	72078271	72078530	+	0	NA	intron (NM_014767, intron 2 of 11)	AluY|SINE|Alu	10151	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
203344	chr6	170285401	170285800	+	0	NA	exon (NM_005618, exon 6 of 11)	exon (NM_005618, exon 6 of 11)	-5103	NM_001286379	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
153965	chr22	30361451	30361750	+	0	NA	intron (NM_001017437, intron 1 of 11)	MER33|DNA|hAT-Charlie	-4706	NM_005877	10291		NM_005877	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	splicing factor 3a subunit 1	protein-coding
66578	chr14	63477271	63477430	+	0	NA	intron (NM_006246, intron 2 of 13)	intron (NM_006246, intron 2 of 13)	30888	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
190044	chr5	177521121	177521780	+	0	NA	intron (NM_001190946, intron 8 of 8)	intron (NM_001190946, intron 8 of 8)	-4489	NM_016222	51428		NM_016222	ENSG00000183258	DDX41	ABS|MPLPF	DEAD-box helicase 41	protein-coding
103023	chr17	76996551	76996850	+	0	NA	Intergenic	Intergenic	-27501	NR_136417	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
52755	chr12	56653401	56654030	+	0	NA	Intergenic	MER11B|LTR|ERVK	-7731	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
46181	chr11	123261501	123261780	+	0	NA	Intergenic	Intergenic	-66392	NM_024769	79827		NM_024769	ENSG00000166250	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR like membrane protein	protein-coding
31344	chr10	93079971	93080580	+	0	NA	Intergenic	Intergenic	6382	NM_000783	1592		NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	cytochrome P450 family 26 subfamily A member 1	protein-coding
140614	chr2	233420921	233421380	+	0	NA	intron (NM_001377259, intron 1 of 27)	L2a|LINE|L2	1938	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
59932	chr13	31148021	31148280	+	0	NA	intron (NM_001286503, intron 9 of 16)	intron (NM_001286503, intron 9 of 16)	13754	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
114038	chr19	10957101	10957300	+	0	NA	Intergenic	AluJb|SINE|Alu	-3830	NM_001374457	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
216011	chr8	9002421	9003700	+	0	NA	promoter-TSS (NM_001354635)	promoter-TSS (NM_001354635)	-54	NM_001354635	90459		NM_153332	ENSG00000104626	ERI1	3'HEXO|HEXO|HXAL|SEMDGC|SEMDGS|THEX1	exoribonuclease 1	protein-coding
228845	chr9	112249121	112249380	+	0	NA	intron (NM_001375918, intron 7 of 13)	L1ME3D|LINE|L1	-73953	NM_001282643	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
124358	chr19	58350401	58351130	+	0	NA	intron (NM_130786, intron 5 of 7)	CpG-15306	-1205	NR_015380	503538		NR_015380	ENSG00000268895	A1BG-AS1	A1BG-AS|A1BGAS|NCRNA00181	A1BG antisense RNA 1	ncRNA
185404	chr5	129096401	129097000	+	0	NA	promoter-TSS (NR_039776)	promoter-TSS (NR_039776)	-988	NR_039776	100616175		NR_039776	ENSG00000264563	MIR4633	-	microRNA 4633	ncRNA
143850	chr20	32529801	32530000	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	19941	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
106510	chr18	21051221	21051850	+	0	NA	intron (NM_005406, intron 2 of 32)	L2c|LINE|L2	60278	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
120990	chr19	45762771	45763680	+	0	NA	intron (NM_001310124, intron 13 of 14)	intron (NM_001310124, intron 13 of 14)	-4571	NR_147193	109729182		NR_147193	ENSG00000267395	DM1-AS	-	DM1 locus antisense RNA	ncRNA
109713	chr19	1071701	1072150	+	0	NA	intron (NM_001282335, intron 1 of 21)	intron (NM_001282335, intron 1 of 21)	715	NM_001282335	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
157333	chr22	44651571	44651730	+	0	NA	Intergenic	Intergenic	-16897	NM_001017529	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
67949	chr14	74793601	74794100	+	0	NA	intron (NM_019589, intron 4 of 20)	intron (NM_019589, intron 4 of 20)	30534	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
228370	chr9	99103251	99103630	+	0	NA	Intergenic	MIR|SINE|MIR	-1673	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233570	chrX	294871	295430	+	0	NA	intron (NR_163416, intron 6 of 7)	AluSz|SINE|Alu	11672	NM_001370373	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
83428	chr16	27254351	27254880	+	0	NA	intron (NM_145080, intron 2 of 7)	AluSx3|SINE|Alu	-13590	NR_037184	400512		NR_037184	ENSG00000245888	NSMCE1-DT	-	NSMCE1 divergent transcript	ncRNA
69556	chr14	96699351	96699530	+	0	NA	Intergenic	MIRb|SINE|MIR	-41751	NR_146552	105370646		NR_146552	ENSG00000258979	LINC02299	-	long intergenic non-protein coding RNA 2299	ncRNA
53068	chr12	57721971	57722130	+	0	NA	TTS (NM_001017958)	TTS (NM_001017958)	-4190	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
5824	chr1	26691221	26691500	+	0	NA	TTS (NR_135804)	TTS (NR_135804)	2771	NR_135804	101928728		NR_135804	ENSG00000260063	LOC101928728	-	uncharacterized LOC101928728	ncRNA
138096	chr2	202263171	202263530	+	0	NA	Intergenic	AluSx|SINE|Alu	-2413	NM_015934	51602		NM_015934	ENSG00000055044	NOP58	HSPC120|NOP5|NOP5/NOP58	NOP58 ribonucleoprotein	protein-coding
8630	chr1	41685351	41685450	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-200717	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
46888	chr11	134038921	134039430	+	0	NA	intron (NR_027276, intron 2 of 2)	intron (NR_027276, intron 2 of 2)	6903	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
42713	chr11	72677951	72679050	+	0	NA	Intergenic	Intergenic	-4078	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
78384	chr15	91857161	91858450	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	3501	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
153851	chr22	30187671	30188130	+	0	NA	Intergenic	Intergenic	-51294	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
178276	chr4	144021571	144021730	+	0	NA	Intergenic	Intergenic	-2270	NM_002100	2994		NM_002100	ENSG00000250361	GYPB	CD235b|GPB|GYP|GYPA|MNS|PAS-3|SS	glycophorin B (MNS blood group)	protein-coding
70692	chr14	103114871	103115430	+	0	NA	Intergenic	MER51A|LTR|ERV1	7759	NR_138038	105370683		NR_138038	ENSG00000259717	LINC00677	C14orf74	long intergenic non-protein coding RNA 677	ncRNA
13562	chr1	115837701	115837900	+	0	NA	3' UTR (NM_001111061, exon 2 of 2)	3' UTR (NM_001111061, exon 2 of 2)	2903	NM_001111061	4808		NM_005599	ENSG00000177551	NHLH2	HEN2|HH27|NSCL2|bHLHa34	nescient helix-loop-helix 2	protein-coding
186695	chr5	138724701	138724900	+	0	NA	Intergenic	Intergenic	28509	NR_134245	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
217638	chr8	30065021	30065280	+	0	NA	intron (NM_016127, intron 5 of 5)	L1ME3A|LINE|L1	17914	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
55513	chr12	105083301	105083700	+	0	NA	intron (NR_027752, intron 1 of 22)	intron (NR_027752, intron 1 of 22)	958	NM_001034173	160428		NM_001034173	ENSG00000136010	ALDH1L2	mtFDH	aldehyde dehydrogenase 1 family member L2	protein-coding
74500	chr15	60128821	60129080	+	0	NA	Intergenic	Intergenic	124639	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
28985	chr10	63260671	63262250	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSx|SINE|Alu	7763	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
85040	chr16	31861301	31862130	+	0	NA	Intergenic	MER67C|LTR|ERV1	-12092	NM_003414	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
87395	chr16	70508821	70509280	+	0	NA	intron (NR_158212, intron 7 of 18)	intron (NR_158212, intron 7 of 18)	14504	NM_001195139	25839		NM_015386	ENSG00000103051	COG4	CDG2J|COD1|SWILS	component of oligomeric golgi complex 4	protein-coding
122675	chr19	49880421	49880830	+	0	NA	intron (NM_024682, intron 4 of 16)	intron (NM_024682, intron 4 of 16)	-2269	NM_001278160	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
10155	chr1	61049071	61049230	+	0	NA	Intergenic	Intergenic	-28077	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
52275	chr12	54547771	54548200	+	0	NA	3' UTR (NM_005337, exon 31 of 31)	3' UTR (NM_005337, exon 31 of 31)	-1408	NM_001288768	5153		NM_000924	ENSG00000123360	PDE1B	HEL-S-79p|PDE1B1|PDES1B	phosphodiesterase 1B	protein-coding
148339	chr20	63795971	63796500	+	0	NA	intron (NM_001369741, intron 1 of 4)	intron (NM_001369741, intron 1 of 4)	9268	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
190450	chr5	179907121	179908530	+	0	NA	promoter-TSS (NM_198868).2	promoter-TSS (NM_198868).2	72	NM_198868	23061		NM_015043	ENSG00000197226	TBC1D9B	GRAMD9B	TBC1 domain family member 9B	protein-coding
135715	chr2	169105351	169106000	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	24568	NM_001142271	10170		NM_005771	ENSG00000073737	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4|hRoDH-E2	dehydrogenase/reductase 9	protein-coding
30013	chr10	73777601	73778030	+	0	NA	Intergenic	AluSq|SINE|Alu	-4233	NM_203298	118487		NM_203298	ENSG00000172586	CHCHD1	C10orf34|C2360|MRP-S37|mS37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding
45555	chr11	118782121	118783030	+	0	NA	intron (NM_004397, intron 2 of 13)	intron (NM_004397, intron 2 of 13)	8373	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
239266	chrY	13474921	13475600	+	0	NA	intron (NR_047598, intron 2 of 30)	intron (NR_047598, intron 2 of 30)	-3917	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
126128	chr2	26069571	26069730	+	0	NA	intron (NM_016131, intron 1 of 5)	AluSg4|SINE|Alu	35566	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
231590	chr9	131539101	131540080	+	0	NA	Intergenic	Intergenic	-5933	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
36311	chr11	3857171	3857730	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluJo|SINE|Alu	1388	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
87360	chr16	70383751	70383850	+	0	NA	intron (NM_006927, intron 4 of 6)	intron (NM_006927, intron 4 of 6)	36897	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
152269	chr22	20269401	20270480	+	0	NA	Intergenic	Intergenic	-1622	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
83646	chr16	28306721	28307400	+	0	NA	intron (NM_001024401, intron 1 of 3)	(CAGCCC)n|Simple_repeat|Simple_repeat	14535	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
60427	chr13	40990351	40991480	+	0	NA	intron (NM_001370329, intron 1 of 9)	L1MC3|LINE|L1	-8016	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
79967	chr16	1779351	1779650	+	0	NA	intron (NM_080861, intron 2 of 6)	intron (NM_080861, intron 2 of 6)	2322	NM_001324081	90864		NM_080861	ENSG00000162032	SPSB3	C16orf31|SSB3	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding
206086	chr7	27188751	27189930	+	0	NA	TTS (NR_002795)	TTS (NR_002795)	3932	NR_002795	221883		NR_002795	ENSG00000240990	HOXA11-AS	HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|LncHOXA11|NCRNA00076	HOXA11 antisense RNA	ncRNA
96212	chr17	39768851	39768950	+	0	NA	intron (NM_001257413, intron 3 of 3)	MER113|DNA|hAT-Charlie	9325	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
182039	chr5	55763721	55764100	+	0	NA	intron (NM_024415, intron 5 of 21)	intron (NM_024415, intron 5 of 21)	-2975	NM_001166534	54514		NM_019039	ENSG00000152670	DDX4	VASA	DEAD-box helicase 4	protein-coding
153357	chr22	24425651	24425830	+	0	NA	intron (NM_001278500, intron 1 of 2)	intron (NM_001278500, intron 1 of 2)	-1859	NR_103544	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
130193	chr2	84456371	84456930	+	0	NA	intron (NM_003849, intron 1 of 8)	intron (NM_003849, intron 1 of 8)	2630	NM_003849	8802		NM_003849	ENSG00000163541	SUCLG1	GALPHA|MTDPS9|SUCLA1	succinate-CoA ligase GDP/ADP-forming subunit alpha	protein-coding
53994	chr12	75350501	75350700	+	0	NA	intron (NM_001304964, intron 3 of 5)	L1PA10|LINE|L1	15930	NM_152779	256710		NM_152779	ENSG00000173401	GLIPR1L1	ALKN2972|PRO7434	GLIPR1 like 1	protein-coding
95481	chr17	36208451	36208750	+	0	NA	Intergenic	L1PA15|LINE|L1	-2308	NM_207007	388372		NM_207007		CCL4L1	AT744.2|CCL4L|LAG-1|LAG1|MIP-1-beta|SCYA4L|SCYA4L1|SCYA4L2	C-C motif chemokine ligand 4 like 1	protein-coding
91489	chr17	4900611	4901400	+	0	NA	exon (NM_000080, exon 7 of 12)	exon (NM_000080, exon 7 of 12)	1469	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
579	chr1	1273251	1275150	+	0	NA	promoter-TSS (NM_058167)	promoter-TSS (NM_058167)	-346	NM_194458	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
178027	chr4	139456071	139456650	+	0	NA	intron (NM_031296, intron 1 of 1)	intron (NM_031296, intron 1 of 1)	2239	NM_031296	83452		NM_031296	ENSG00000172007	RAB33B	SMC2	RAB33B, member RAS oncogene family	protein-coding
230943	chr9	129416251	129416550	+	0	NA	Intergenic	Intergenic	-72260	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
3560	chr1	16157001	16157330	+	0	NA	Intergenic	Intergenic	-1096	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
129986	chr2	74021751	74021850	+	0	NA	intron (NM_001366022, intron 2 of 10)	intron (NM_001366022, intron 2 of 10)	19108	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
132818	chr2	110562321	110562900	+	0	NA	intron (NM_001384362, intron 6 of 22)	intron (NM_001384362, intron 6 of 22)	14290	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
13291	chr1	113069471	113069630	+	0	NA	intron (NR_103777, intron 1 of 2)	SVA_F|Retroposon|SVA	3552	NR_103777	100996251		NR_103777	ENSG00000238198	LRIG2-DT	-	LRIG2 divergent transcript	ncRNA
24754	chr1	248818851	248819350	+	0	NA	intron (NM_030645, intron 2 of 6)	intron (NM_030645, intron 2 of 6)	6266	NM_001322463	80851		NM_030645	ENSG00000175137	SH3BP5L	-	SH3 binding domain protein 5 like	protein-coding
201403	chr6	145866471	145867500	+	0	NA	intron (NR_038246, intron 2 of 2)	intron (NR_038246, intron 2 of 2)	52109	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
119107	chr19	39331971	39332330	+	0	NA	intron (NM_004877, intron 4 of 6)	AluSx1|SINE|Alu	3893	NM_001301008	9535		NM_004877	ENSG00000130755	GMFG	GMF-GAMMA	glia maturation factor gamma	protein-coding
138404	chr2	204958321	204958600	+	0	NA	intron (NM_205863, intron 2 of 21)	intron (NM_205863, intron 2 of 21)	412985	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
205685	chr7	23183921	23184250	+	0	NA	intron (NM_007342, intron 1 of 6)	intron (NM_007342, intron 1 of 6)	2037	NM_001370444	11097		NM_007342	ENSG00000136243	NUP42	CG1|NLP-1|NLP1|NLP_1|NUPL2|UIP1|hCG1	nucleoporin 42	protein-coding
88936	chr16	87833971	87834130	+	0	NA	TTS (NR_106833)	TTS (NR_106833)	610	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
54140	chr12	76544701	76545100	+	0	NA	intron (NM_001319652, intron 1 of 25)	MIRb|SINE|MIR	14871	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
75528	chr15	66578371	66578530	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-3740	NR_110372	102723165		NR_110372	ENSG00000259471	LINC01169	-	long intergenic non-protein coding RNA 1169	ncRNA
185096	chr5	119077271	119078280	+	0	NA	intron (NM_001290321, intron 1 of 43)	(GT)n|Simple_repeat|Simple_repeat	6688	NM_001290322	1657		NM_005509	ENSG00000172869	DMXL1	-	Dmx like 1	protein-coding
34913	chr11	403601	404130	+	0	NA	intron (NM_007183, intron 10 of 12)	intron (NM_007183, intron 10 of 12)	9656	NM_007183	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
219735	chr8	81060921	81061900	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	50658	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
207395	chr7	44215071	44215230	+	0	NA	TTS (NM_001363678)	TTS (NM_001363678)	14172	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
205418	chr7	16647621	16648030	+	0	NA	intron (NM_001159767, intron 1 of 11)	intron (NM_001159767, intron 1 of 11)	1644	NM_014038	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
19110	chr1	171495251	171495350	+	0	NA	intron (NM_015172, intron 1 of 33)	L3|LINE|CR1	9770	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
26216	chr10	14573751	14574550	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-1775	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
32328	chr10	102229251	102230400	+	0	NA	TTS (NM_005029)	TTS (NM_005029)	3526	NM_152310	83401		NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
187137	chr5	140503571	140503730	+	0	NA	intron (NM_020690, intron 15 of 35)	AluSx|SINE|Alu	-44012	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
215852	chr8	7227321	7227580	+	0	NA	intron (NR_168401, intron 1 of 2)	intron (NR_168401, intron 1 of 2)	738	NR_168401	101928095		NR_168401		LOC101928095	-	uncharacterized LOC101928095	ncRNA
193222	chr6	29843471	29843830	+	0	NA	Intergenic	AluJb|SINE|Alu	15825	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
7045	chr1	31945951	31946050	+	0	NA	Intergenic	AluSp|SINE|Alu	-7632	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
172771	chr4	2927151	2927700	+	0	NA	intron (NM_176801, intron 15 of 15)	intron (NM_176801, intron 15 of 15)	6812	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
27413	chr10	31381751	31382180	+	0	NA	intron (NM_001323638, intron 4 of 12)	AluSz|SINE|Alu	17790	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
52622	chr12	56264401	56264600	+	0	NA	Intergenic	Intergenic	-2442	NM_144576	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
219869	chr8	85187421	85187700	+	0	NA	promoter-TSS (NM_001083589)	promoter-TSS (NM_001083589)	-105	NM_001083589	1875		NM_001951	ENSG00000133740	E2F5	E2F-5	E2F transcription factor 5	protein-coding
168723	chr3	150753001	150753580	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	9879	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
16540	chr1	154953721	154954230	+	0	NA	intron (NM_020524, intron 1 of 10)	intron (NM_020524, intron 1 of 10)	2124	NM_020524	57326		NM_020524	ENSG00000163346	PBXIP1	HPIP	PBX homeobox interacting protein 1	protein-coding
178249	chr4	143516871	143517030	+	0	NA	intron (NM_003601, intron 1 of 23)	intron (NM_003601, intron 1 of 23)	-2113	NR_104027	100128055		NR_104027	ENSG00000245112	SMARCA5-AS1	-	SMARCA5 antisense RNA 1	ncRNA
171324	chr3	195984621	195985130	+	0	NA	intron (NR_003264, intron 3 of 16)	intron (NR_003264, intron 3 of 16)	5404	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
193197	chr6	29745971	29746130	+	0	NA	intron (NR_026972, intron 2 of 5).3	intron (NR_026972, intron 2 of 5).3	2999	NR_026972	285830		NM_001003807	ENSG00000214922	HLA-F-AS1	-	HLA-F antisense RNA 1	ncRNA
123290	chr19	53551601	53551800	+	0	NA	intron (NM_001317113, intron 2 of 4)	MER2|DNA|TcMar-Tigger	-2799	NM_001253801	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
185068	chr5	116137451	116137980	+	0	NA	intron (NM_016144, intron 5 of 6)	intron (NM_016144, intron 5 of 6)	52253	NM_001308080	51397		NM_016144	ENSG00000145781	COMMD10	PTD002	COMM domain containing 10	protein-coding
155238	chr22	37932221	37932680	+	0	NA	intron (NM_033386, intron 10 of 15)	intron (NM_033386, intron 10 of 15)	21151	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
12236	chr1	100423151	100423250	+	0	NA	intron (NM_001319210, intron 4 of 16)	L2b|LINE|L2	70694	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
8087	chr1	39035321	39035680	+	0	NA	TTS (NM_001184979)	TTS (NM_001184979)	9150	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
177820	chr4	123603301	123603500	+	0	NA	Intergenic	MER50|LTR|ERV1	-46591	NR_027105	285419		NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
96724	chr17	41655901	41656100	+	0	NA	Intergenic	Intergenic	-15801	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
138172	chr2	202640701	202641230	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	5996	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
146672	chr20	50512221	50513000	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	2227	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
148033	chr20	63177171	63178030	+	0	NA	promoter-TSS (NR_029670)	promoter-TSS (NR_029670)	-900	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
214926	chr7	151522501	151522700	+	0	NA	Intergenic	Intergenic	-2705	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
93900	chr17	21247271	21247930	+	0	NA	intron (NM_152914, intron 1 of 2)	intron (NM_152914, intron 1 of 2)	5810	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
130342	chr2	84999671	85000100	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	28724	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
48575	chr12	10290851	10291350	+	0	NA	intron (NM_001351060, intron 2 of 8)	Tigger1|DNA|TcMar-Tigger	-13346	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
136205	chr2	174571701	174572550	+	0	NA	exon (NM_001375836, exon 5 of 5)	exon (NM_001375836, exon 5 of 5)	-14053	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
35683	chr11	1887321	1887750	+	0	NA	exon (NM_002339, exon 10 of 11)	exon (NM_002339, exon 10 of 11)	7490	NR_107001	102465993		NR_107001	ENSG00000284594	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
11652	chr1	91801971	91802330	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	84001	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
162846	chr3	49316901	49317100	+	0	NA	intron (NM_001251877, intron 6 of 6)	intron (NM_001251877, intron 6 of 6)	23053	NM_003363	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
143782	chr20	32445771	32446830	+	0	NA	3' UTR (NM_001256798, exon 11 of 11)	3' UTR (NM_001256798, exon 11 of 11)	37190	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
233821	chrX	1479001	1479200	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-25338	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
77952	chr15	89360671	89361000	+	0	NA	promoter-TSS (NR_133001)	promoter-TSS (NR_133001)	-744	NR_133001	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
120679	chr19	45118551	45119080	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	25636	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
213873	chr7	142352501	142353930	+	0	NA	Intergenic	Intergenic	-80966	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
168624	chr3	149656651	149656950	+	0	NA	intron (NM_001348362, intron 5 of 9)	(AC)n|Simple_repeat|Simple_repeat	1225	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
56247	chr12	111994301	111995380	+	0	NA	intron (NM_138341, intron 2 of 9)	MER11D|LTR|ERVK	18325	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
167432	chr3	129039521	129039980	+	0	NA	exon (NM_001377500, exon 8 of 8)	exon (NM_001377500, exon 8 of 8)	-21029	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
32964	chr10	110460251	110461100	+	0	NA	Intergenic	Intergenic	-37232	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
33270	chr10	114521401	114521600	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	5413	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
182333	chr5	59123501	59124350	+	0	NA	intron (NM_001364603, intron 5 of 15)	MIR|SINE|MIR	-84449	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
239298	chrY	14626651	14626750	+	0	NA	intron (NM_001365590, intron 4 of 7)	LTR12C|LTR|ERV1	4679	NM_001164238	22829		NM_014893	ENSG00000165246	NLGN4Y	HNL4Y	neuroligin 4 Y-linked	protein-coding
5574	chr1	25971221	25972230	+	0	NA	intron (NM_000437, intron 10 of 10)	MLT1M|LTR|ERVL-MaLR	26338	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
88307	chr16	84146271	84147030	+	0	NA	intron (NM_178452, intron 1 of 11)	AluSx|SINE|Alu	1342	NM_178452	123872		NM_178452	ENSG00000154099	DNAAF1	CILD13|DAU1|LRRC50|ODA7|swt	dynein axonemal assembly factor 1	protein-coding
68885	chr14	91330071	91330330	+	0	NA	intron (NM_001080414, intron 10 of 29)	intron (NM_001080414, intron 10 of 29)	-76320	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
227071	chr9	84394421	84394500	+	0	NA	Intergenic	MER31A|LTR|ERV1	-25733	NM_022127	64078		NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
235181	chrX	41293351	41293450	+	0	NA	Intergenic	Intergenic	17661	NR_135616	105373185		NR_135616	ENSG00000223714	LINC02601	-	long intergenic non-protein coding RNA 2601	ncRNA
150265	chr21	41768621	41769280	+	0	NA	Intergenic	Intergenic	-1898	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
40798	chr11	64899761	64903900	+	0	NA	TTS (NR_106807)	TTS (NR_106807)	625	NR_106807	102466727		NR_106807	ENSG00000274314	MIR6749	hsa-mir-6749	microRNA 6749	ncRNA
62041	chr13	89088271	89088450	+	0	NA	Intergenic	L1PA2|LINE|L1	-146931	NR_047025	100874172		NR_047025		LINC00440	-	long intergenic non-protein coding RNA 440	ncRNA
204842	chr7	5775601	5775800	+	0	NA	intron (NM_001377156, intron 1 of 17)	AluSx1|SINE|Alu	5963	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
180035	chr5	1056801	1057000	+	0	NA	intron (NM_006598, intron 22 of 23).2	intron (NM_006598, intron 22 of 23).2	6074	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
216884	chr8	22665621	22667030	+	0	NA	intron (NR_156436, intron 1 of 9)	GA-rich|Low_complexity|Low_complexity	2796	NM_018688	55909		NM_018688	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
179910	chr5	688821	689080	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	4402	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
41096	chr11	65532701	65533130	+	0	NA	intron (NM_020680, intron 9 of 17)	intron (NM_020680, intron 9 of 17)	7832	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
69625	chr14	97702101	97702300	+	0	NA	Intergenic	Intergenic	-15542	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
178138	chr4	142282821	142283600	+	0	NA	intron (NR_169617, intron 7 of 22)	L2a|LINE|L2	22622	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
155092	chr22	37569151	37569250	+	0	NA	3' UTR (NM_152243, exon 3 of 3)	3' UTR (NM_152243, exon 3 of 3)	8720	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
115012	chr19	14070351	14071000	+	0	NA	Intergenic	CpG	-2111	NM_001291291	113230		NM_001291291	ENSG00000141854	MISP3	-	MISP family member 3	protein-coding
131344	chr2	96157751	96158450	+	0	NA	Intergenic	Intergenic	-12660	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
212629	chr7	129372821	129373080	+	0	NA	intron (NM_001130723, intron 1 of 16)	intron (NM_001130723, intron 1 of 16)	-2888	NM_001130722	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
197508	chr6	75747871	75748030	+	0	NA	Intergenic	Intergenic	-1289	NM_001368866	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
169881	chr3	177410701	177410950	+	0	NA	Intergenic	Intergenic	-31096	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
226234	chr9	66263721	66264300	+	0	NA	Intergenic	GSATII|Satellite|centr	-99104	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
89213	chr16	88618451	88618630	+	0	NA	intron (NM_144604, intron 8 of 17)	intron (NM_144604, intron 8 of 17)	-20032	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
50917	chr12	49322301	49323980	+	0	NA	promoter-TSS (NM_005480)	promoter-TSS (NM_005480)	-115	NM_001278324	10024		NM_005480	ENSG00000135451	TROAP	TASTIN	trophinin associated protein	protein-coding
3130	chr1	12437001	12437580	+	0	NA	intron (NM_018156, intron 64 of 68)	intron (NM_018156, intron 64 of 68)	-69956	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
28059	chr10	43283021	43283780	+	0	NA	Intergenic	Intergenic	-16335	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
5049	chr1	24542021	24542300	+	0	NA	intron (NR_109781, intron 2 of 2)	intron (NR_109781, intron 2 of 2)	13864	NR_109781	100506985		NR_109781		NCMAP-DT	-	NCMAP divergent transcript	ncRNA
208343	chr7	66492321	66492630	+	0	NA	Intergenic	Intergenic	-1157	NR_134573	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
59430	chr13	25574471	25574730	+	0	NA	intron (NM_016529, intron 18 of 36)	intron (NM_016529, intron 18 of 36)	105826	NM_001313741	51761		NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
208227	chr7	65375271	65375430	+	0	NA	intron (NM_001287534, intron 1 of 1)	intron (NM_001287534, intron 1 of 1)	1495	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
138229	chr2	202765371	202765730	+	0	NA	exon (NM_173511, exon 8 of 8)	exon (NM_173511, exon 8 of 8)	63684	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
139939	chr2	230798771	230799150	+	0	NA	intron (NM_016289, intron 5 of 8)	intron (NM_016289, intron 5 of 8)	-65225	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
45448	chr11	118444501	118444950	+	0	NA	intron (NM_001197104, intron 1 of 35)	AluJb|SINE|Alu	8233	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
58204	chr12	126768371	126769130	+	0	NA	intron (NR_033878, intron 1 of 4)	intron (NR_033878, intron 1 of 4)	3512	NR_033878	387895		NR_033878		LINC00944	DMDRMR	long intergenic non-protein coding RNA 944	ncRNA
209937	chr7	92589701	92591250	+	0	NA	promoter-TSS (NR_109929)	promoter-TSS (NR_109929)	-85	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
236445	chrX	71542471	71542630	+	0	NA	intron (NM_181672, intron 3 of 21)	intron (NM_181672, intron 3 of 21)	9446	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
137375	chr2	196183771	196184330	+	0	NA	Intergenic	Intergenic	-12472	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
155149	chr22	37667421	37667880	+	0	NA	TTS (NM_020315)	TTS (NM_020315)	-7986	NM_002305	3956		NM_002305	ENSG00000100097	LGALS1	GAL1|GBP	galectin 1	protein-coding
86344	chr16	66485171	66485330	+	0	NA	intron (NM_001197225, intron 4 of 4)	intron (NM_001197225, intron 4 of 4)	-8848	NR_109960	101927726		NR_109960	ENSG00000261656	BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
137840	chr2	200578801	200579130	+	0	NA	intron (NM_001160033, intron 8 of 8)	MER20|DNA|hAT-Charlie	-7049	NM_001159	316		NM_001159	ENSG00000138356	AOX1	AO|AOH1	aldehyde oxidase 1	protein-coding
232058	chr9	133470021	133470280	+	0	NA	TTS (NM_001145099).2	TTS (NM_001145099).2	8949	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
223456	chr8	143992121	143992650	+	0	NA	intron (NM_000837, intron 5 of 6)	intron (NM_000837, intron 5 of 6)	2327	NM_000837	2907		NM_000837	ENSG00000178719	GRINA	HNRGW|LFG1|NMDARA1|TMBIM3	glutamate ionotropic receptor NMDA type subunit associated protein 1	protein-coding
175860	chr4	79704751	79705090	+	0	NA	Intergenic	L1HS|LINE|L1	-122551	NR_026555	118425		NM_058168	ENSG00000251321	PCAT4	GDEP|PCA4|PCAN1	prostate cancer associated transcript 4	ncRNA
188154	chr5	150429671	150429830	+	0	NA	Intergenic	Intergenic	-16814	NM_001025159	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
39806	chr11	61972821	61973630	+	0	NA	Intergenic	Intergenic	-5591	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
85117	chr16	34267601	34268000	+	0	NA	Intergenic	Intergenic	104222	NR_162093	113218496		NR_162093		MIR9901	-	microRNA 9901	ncRNA
64228	chr14	23074471	23074830	+	0	NA	intron (NM_014977, intron 8 of 18)	intron (NM_014977, intron 8 of 18)	-3081	NM_001164816	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
162391	chr3	48155671	48155830	+	0	NA	Intergenic	AluSp|SINE|Alu	32667	NM_001789	993		NM_001789	ENSG00000164045	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
91037	chr17	2851871	2852550	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	55772	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
125700	chr2	20365251	20365550	+	0	NA	Intergenic	Intergenic	-13147	NM_001352920	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
187028	chr5	139790751	139791280	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4793	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
54834	chr12	94980651	94981050	+	0	NA	intron (NM_001258338, intron 2 of 2)	intron (NM_001258338, intron 2 of 2)	22847	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
79749	chr16	1347421	1347830	+	0	NA	exon (NM_003933, exon 30 of 34)	exon (NM_003933, exon 30 of 34)	4253	NM_001001410	115939		NM_001001410	ENSG00000007520	TSR3	C16orf42|HsTsr3	TSR3 ribosome maturation factor	protein-coding
183615	chr5	80217301	80217730	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	38533	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
9744	chr1	53283621	53283980	+	0	NA	intron (NM_017522, intron 3 of 15)	CpG	44270	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
60846	chr13	45468501	45469350	+	0	NA	intron (NM_031431, intron 1 of 22)	intron (NM_031431, intron 1 of 22)	3986	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
54017	chr12	75487371	75488050	+	0	NA	intron (NM_006851, intron 2 of 5)	intron (NM_006851, intron 2 of 5)	6955	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
226380	chr9	70337001	70337200	+	0	NA	intron (NM_015110, intron 17 of 24)	THE1B|LTR|ERVL-MaLR	77557	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
65200	chr14	49677521	49677930	+	0	NA	intron (NM_002692, intron 3 of 18)	intron (NM_002692, intron 3 of 18)	10489	NM_002692	5427		NM_002692	ENSG00000100479	POLE2	DPE2	DNA polymerase epsilon 2, accessory subunit	protein-coding
73954	chr15	51736721	51738630	+	0	NA	promoter-TSS (NM_001363969)	promoter-TSS (NM_001363969)	-20	NM_153374	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
91814	chr17	7063451	7063550	+	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	16751	NM_006344	10462		NM_006344	ENSG00000132514	CLEC10A	CD301|CLECSF13|CLECSF14|HML|HML2|MGL	C-type lectin domain containing 10A	protein-coding
143586	chr20	31680171	31681000	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-40922	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
239032	chrY	4991721	4992000	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-8436	NM_001278619	83259		NM_032971	ENSG00000099715	PCDH11Y	PCDH-PC|PCDH22|PCDHX|PCDHY	protocadherin 11 Y-linked	protein-coding
215919	chr8	8231121	8231850	+	0	NA	intron (NR_024363, intron 2 of 5)	Charlie4z|DNA|hAT-Charlie	2915	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
14189	chr1	121586721	121586980	+	0	NA	Intergenic	L1PA7|LINE|L1	67738	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
141998	chr20	1439921	1440400	+	0	NA	Intergenic	Intergenic	27532	NM_018839	55968		NM_016143	ENSG00000088833	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 cofactor	protein-coding
19047	chr1	169702401	169703300	+	0	NA	intron (NM_000655, intron 6 of 8)	intron (NM_000655, intron 6 of 8)	6007	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
40433	chr11	64188121	64188750	+	0	NA	intron (NM_001282653, intron 1 of 13)	AluJo|SINE|Alu	2264	NM_006819	10963		NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
170322	chr3	184359101	184359830	+	0	NA	intron (NM_004366, intron 1 of 23)	intron (NM_004366, intron 1 of 23)	2140	NM_001171089	1181		NM_004366	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|FHA2|FHII|HALD2|LKPAT|clC-2	chloride voltage-gated channel 2	protein-coding
211071	chr7	102474001	102474550	+	0	NA	intron (NM_001371100, intron 2 of 2)	intron (NM_001371100, intron 2 of 2)	2806	NR_039677	100616367		NR_039677	ENSG00000284596	MIR4467	-	microRNA 4467	ncRNA
107158	chr18	35288051	35288350	+	0	NA	intron (NM_001166012, intron 1 of 4)	L1ME2|LINE|L1	2029	NM_001112734	100101467		NM_001112734	ENSG00000186814	ZSCAN30	ZNF-WYM|ZNF397OS|ZNF917	zinc finger and SCAN domain containing 30	protein-coding
18372	chr1	161317351	161317780	+	0	NA	intron (NM_001035513, intron 1 of 3)	AluSx|SINE|Alu	3184	NM_001035511	6391		NM_003001	ENSG00000143252	SDHC	CYB560|CYBL|PGL3|PPGL3|QPS1|SDH3	succinate dehydrogenase complex subunit C	protein-coding
101570	chr17	68046201	68046400	+	0	NA	intron (NM_002266, intron 10 of 10)	intron (NM_002266, intron 10 of 10)	10340	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
26524	chr10	21494421	21494950	+	0	NA	non-coding (NR_160800, exon 2 of 2)	non-coding (NR_160800, exon 2 of 2)	1956	NR_031736	100302129		NR_031736	ENSG00000222071	MIR1915	MIRN1915|hsa-mir-1915	microRNA 1915	ncRNA
126037	chr2	25364401	25365200	+	0	NA	Intergenic	Intergenic	-22210	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
176286	chr4	87118951	87119050	+	0	NA	intron (NM_001313959, intron 11 of 19)	MER51A|LTR|ERV1	101268	NM_001292003	57563		NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
183488	chr5	79269651	79270000	+	0	NA	intron (NM_152405, intron 1 of 10)	AluJo|SINE|Alu	33694	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
106748	chr18	23573101	23574450	+	0	NA	intron (NM_000271, intron 1 of 24)	intron (NM_000271, intron 1 of 24)	12731	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
200173	chr6	130697821	130698140	+	0	NA	Intergenic	Intergenic	-129426	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
36619	chr11	7251701	7252230	+	0	NA	promoter-TSS (NM_175733)	promoter-TSS (NM_175733)	61	NM_175733	143425		NM_175733	ENSG00000170743	SYT9	-	synaptotagmin 9	protein-coding
46687	chr11	128754071	128754650	+	0	NA	intron (NM_001167681, intron 2 of 9)	intron (NM_001167681, intron 2 of 9)	-58337	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
18901	chr1	168343651	168344000	+	0	NA	Intergenic	Intergenic	-31699	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
108024	chr18	58862801	58864080	+	0	NA	promoter-TSS (NM_001353531)	promoter-TSS (NM_001353531)	-43	NM_001318727	55205		NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
116357	chr19	17869201	17869600	+	0	NA	Intergenic	Intergenic	-2545	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
231023	chr9	129584071	129585080	+	0	NA	Intergenic	Intergenic	-24309	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
108942	chr18	79490121	79490380	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-89032	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
122941	chr19	50715021	50715280	+	0	NA	intron (NM_016148, intron 4 of 23)	intron (NM_016148, intron 4 of 23)	4652	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
94554	chr17	29596621	29596880	+	0	NA	intron (NM_152345, intron 1 of 14)	intron (NM_152345, intron 1 of 14)	3618	NM_152345	124930		NM_152345	ENSG00000198720	ANKRD13B	-	ankyrin repeat domain 13B	protein-coding
199163	chr6	111741451	111742230	+	0	NA	intron (NM_002037, intron 3 of 13)	MER5A|DNA|hAT-Charlie	17291	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
43390	chr11	77074251	77074350	+	0	NA	intron (NM_004055, intron 1 of 12)	intron (NM_004055, intron 1 of 12)	7329	NM_004055	726		NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
31383	chr10	94402351	94402930	+	0	NA	promoter-TSS (NM_015188)	promoter-TSS (NM_015188)	99	NM_015188	23232		NM_015188	ENSG00000108239	TBC1D12	-	TBC1 domain family member 12	protein-coding
15352	chr1	149965471	149965830	+	0	NA	intron (NM_020205, intron 5 of 11)	intron (NM_020205, intron 5 of 11)	-28771	NM_001145862	10903		NM_006697	ENSG00000014914	MTMR11	CRA	myotubularin related protein 11	protein-coding
221638	chr8	125924351	125925180	+	0	NA	intron (NR_038447, intron 3 of 3)	intron (NR_038447, intron 3 of 3)	26432	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
228435	chr9	99827351	99827450	+	0	NA	intron (NM_173200, intron 3 of 8)	intron (NM_173200, intron 3 of 8)	5515	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
13766	chr1	117054971	117055750	+	0	NA	intron (NR_110786, intron 1 of 3)	intron (NR_110786, intron 1 of 3)	4130	NR_110786	101929099		NR_110786	ENSG00000236137	CD101-AS1	-	CD101 antisense RNA 1	ncRNA
17564	chr1	156814901	156815350	+	0	NA	promoter-TSS (NM_001007792)	promoter-TSS (NM_001007792)	-625	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
120697	chr19	45166821	45167280	+	0	NA	intron (NM_001270891, intron 1 of 5)	intron (NM_001270891, intron 1 of 5)	-6900	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
166180	chr3	111683701	111684100	+	0	NA	intron (NM_153268, intron 1 of 3)	L2b|LINE|L2	-6467	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
141966	chr20	1322971	1323500	+	0	NA	intron (NR_037661, intron 2 of 9)	intron (NR_037661, intron 2 of 9)	-2108	NR_040047	100507495		NR_040047	ENSG00000234684	SDCBP2-AS1	-	SDCBP2 antisense RNA 1	ncRNA
69272	chr14	93062471	93062950	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	-4742	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
112644	chr19	6811751	6812500	+	0	NA	intron (NM_005428, intron 1 of 26)	MLT1J2|LTR|ERVL-MaLR	39417	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
20946	chr1	202237171	202237400	+	0	NA	intron (NM_001017404, intron 4 of 15)	intron (NM_001017404, intron 4 of 15)	23130	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
139751	chr2	229910601	229911400	+	0	NA	intron (NM_001348325, intron 1 of 42)	intron (NM_001348325, intron 1 of 42)	10679	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
57992	chr12	124322071	124322580	+	0	NA	Intergenic	Intergenic	14917	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
43365	chr11	76810221	76810550	+	0	NA	Intergenic	Intergenic	18633	NM_001318477	25987		NM_015516	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
101327	chr17	66675501	66675700	+	0	NA	intron (NM_002737, intron 5 of 16)	intron (NM_002737, intron 5 of 16)	-111472	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
231329	chr9	130143701	130144530	+	0	NA	non-coding (NR_135124, exon 1 of 2)	non-coding (NR_135124, exon 1 of 2)	104	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
109278	chr19	545121	546000	+	0	NA	intron (NM_001258351, intron 1 of 4)	AluSq2|SINE|Alu	1507	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
94042	chr17	27318151	27319100	+	0	NA	Intergenic	Intergenic	24511	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
78343	chr15	91048051	91048380	+	0	NA	Intergenic	(CTT)n|Simple_repeat|Simple_repeat	25593	NR_110104	101926911		NR_110104	ENSG00000214432	VPS33B-DT	-	VPS33B divergent transcript	ncRNA
57823	chr12	123227671	123228080	+	0	NA	intron (NR_103517, intron 2 of 23)	intron (NR_103517, intron 2 of 23)	5266	NM_022782	10198		NM_022782	ENSG00000051825	MPHOSPH9	MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding
238244	chrX	143928821	143928900	+	0	NA	Intergenic	AluY|SINE|Alu	44789	NR_121210	389898		NM_001012989	ENSG00000276380	UBE2NL	Li174	ubiquitin conjugating enzyme E2 N like (gene/pseudogene)	protein-coding
56589	chr12	117874851	117875250	+	0	NA	intron (NM_173598, intron 1 of 19)	intron (NM_173598, intron 1 of 19)	93940	NM_173598	283455		NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
143807	chr20	32467751	32467850	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	15690	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
82201	chr16	14978801	14979480	+	0	NA	intron (NM_001324019, intron 1 of 22)	MER3|DNA|hAT-Charlie	4114	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
101243	chr17	66250721	66251380	+	0	NA	Intergenic	Intergenic	-21635	NM_000042	350		NM_000042	ENSG00000091583	APOH	B2G1|B2GP1|BG	apolipoprotein H	protein-coding
118826	chr19	38564271	38564430	+	0	NA	intron (NM_000540, intron 90 of 105)	AluSz6|SINE|Alu	-31997	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
210625	chr7	100446371	100446730	+	0	NA	Intergenic	Intergenic	-10053	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
77818	chr15	88626021	88626430	+	0	NA	exon (NM_022767, exon 2 of 4)	exon (NM_022767, exon 2 of 4)	4885	NM_022767	64782		NM_022767	ENSG00000181026	AEN	ISG20L1|pp12744	apoptosis enhancing nuclease	protein-coding
42504	chr11	70268151	70268500	+	0	NA	Intergenic	AluY|SINE|Alu	-2365	NM_001378006	8500		NM_003626	ENSG00000131626	PPFIA1	LIP.1|LIP1|LIPRIN	PTPRF interacting protein alpha 1	protein-coding
98265	chr17	46188651	46189300	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluSx1|SINE|Alu	3807	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
50725	chr12	48972591	48973230	+	0	NA	Intergenic	Intergenic	-1175	NM_003394	7480		NM_003394	ENSG00000169884	WNT10B	SHFM6|STHAG8|WNT-12	Wnt family member 10B	protein-coding
138047	chr2	201421521	201421980	+	0	NA	intron (NM_015049, intron 1 of 15)	L1ME4b|LINE|L1	29708	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
208049	chr7	56046771	56047350	+	0	NA	intron (NM_001370518, intron 1 of 10)	L1MC4|LINE|L1	4384	NM_001370506	5723		NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
193179	chr6	29722071	29722570	+	0	NA	Intergenic	AluY|SINE|Alu	-1020	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
126210	chr2	26814801	26815650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	29169	NM_001809	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
6367	chr1	27862501	27862900	+	0	NA	Intergenic	Intergenic	-9843	NM_004848	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
196117	chr6	42381551	42381850	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	70351	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
25079	chr10	3853671	3853830	+	0	NA	Intergenic	Intergenic	19800	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
21071	chr1	203303221	203303750	+	0	NA	intron (NR_034150, intron 1 of 2)	intron (NR_034150, intron 1 of 2)	1840	NR_034150	730227		NR_034150	ENSG00000233791	BTG2-DT	LINC01136	BTG2 divergent transcript	ncRNA
98290	chr17	46224701	46225930	+	0	NA	promoter-TSS (NM_001379198).3	promoter-TSS (NM_001379198).3	52	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
24046	chr1	235291671	235292030	+	0	NA	intron (NM_016374, intron 2 of 23)	L1ME4b|LINE|L1	-35366	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
90942	chr17	2624471	2624830	+	0	NA	intron (NM_000430, intron 1 of 10)	THE1A|LTR|ERVL-MaLR	30996	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
57781	chr12	123041101	123041300	+	0	NA	intron (NM_001300801, intron 2 of 25)	MIRb|SINE|MIR	-30472	NR_036187	100422931		NR_036187	ENSG00000265526	MIR4304	-	microRNA 4304	ncRNA
140278	chr2	232327001	232327850	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-51326	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
77111	chr15	78934351	78934850	+	0	NA	intron (NM_001319137, intron 6 of 12)	intron (NM_001319137, intron 6 of 12)	10446	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
208192	chr7	64947551	64947850	+	0	NA	Intergenic	CpG	43336	NM_015852	51351		NM_015852	ENSG00000152926	ZNF117	H-plk|HPF9	zinc finger protein 117	protein-coding
222191	chr8	133041151	133041450	+	0	NA	intron (NM_001282964, intron 5 of 6)	intron (NM_001282964, intron 5 of 6)	5281	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
112743	chr19	7366751	7367350	+	0	NA	intron (NM_001367823, intron 2 of 28)	AluJr|SINE|Alu	18113	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
48069	chr12	7129371	7132130	+	0	NA	promoter-TSS (NM_001329454)	promoter-TSS (NM_001329454)	379	NM_014718	9746		NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
164395	chr3	58356151	58356330	+	0	NA	intron (NM_001349498, intron 1 of 17)	intron (NM_001349498, intron 1 of 17)	22934	NM_001349498	54899		NM_017771	ENSG00000168297	PXK	MONAKA|SLOB	PX domain containing serine/threonine kinase like	protein-coding
191042	chr6	3226471	3227480	+	0	NA	intron (NM_178012, intron 1 of 3)	CpG	678	NM_178012	347733		NM_178012	ENSG00000137285	TUBB2B	CDCBM7|PMGYSA|bA506K6.1	tubulin beta 2B class IIb	protein-coding
152028	chr22	19445401	19445600	+	0	NA	intron (NM_173793, intron 2 of 2)	L1ME4a|LINE|L1	2211	NM_001166242	128977		NM_173793	ENSG00000242259	C22orf39	Pants	chromosome 22 open reading frame 39	protein-coding
141612	chr2	241667921	241668330	+	0	NA	intron (NM_013325, intron 8 of 12)	intron (NM_013325, intron 8 of 12)	18690	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
229187	chr9	114614371	114614750	+	0	NA	intron (NM_001330760, intron 1 of 8)	intron (NM_001330760, intron 1 of 8)	3269	NM_153045	203197		NM_153045	ENSG00000157693	TMEM268	C9orf91	transmembrane protein 268	protein-coding
77450	chr15	84343621	84345650	+	0	NA	Intergenic	CpG	-77884	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
29386	chr10	70116221	70116900	+	0	NA	intron (NM_032797, intron 7 of 8)	intron (NM_032797, intron 7 of 8)	16265	NM_032797	84883		NM_032797	ENSG00000042286	AIFM2	AMID|FSP1|PRG3	apoptosis inducing factor mitochondria associated 2	protein-coding
93402	chr17	18360871	18361330	+	0	NA	intron (NM_004169, intron 1 of 11).2	AluSx|SINE|Alu	2450	NM_004169	6470		NM_004169	ENSG00000176974	SHMT1	CSHMT|SHMT	serine hydroxymethyltransferase 1	protein-coding
219906	chr8	86033301	86033530	+	0	NA	Intergenic	Intergenic	36253	NM_033126	85481		NM_033126	ENSG00000147613	PSKH2	-	protein serine kinase H2	protein-coding
12125	chr1	100056521	100056780	+	0	NA	intron (NM_033055, intron 2 of 11)	L1MA3|LINE|L1	18555	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
706	chr1	1422271	1422430	+	0	NA	promoter-TSS (NM_001145210)	promoter-TSS (NM_001145210)	-906	NM_001145210	441869		NM_001145210	ENSG00000235098	ANKRD65	-	ankyrin repeat domain 65	protein-coding
191199	chr6	5340951	5341130	+	0	NA	intron (NM_001374876, intron 2 of 7)	AluSx3|SINE|Alu	79527	NM_001374879	10667		NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
117543	chr19	20999601	21000400	+	0	NA	Intergenic	Intergenic	-20657	NM_001172671	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
136182	chr2	174492851	174494530	+	0	NA	Intergenic	Intergenic	-6602	NM_001267051	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
148682	chr21	6154221	6155600	+	0	NA	Intergenic	Intergenic	43779	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
55704	chr12	107852151	107852250	+	0	NA	Intergenic	AluY|SINE|Alu	51571	NR_037629	728739		NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
169014	chr3	152442801	152443550	+	0	NA	intron (NM_207296, intron 4 of 8)	intron (NM_207296, intron 4 of 8)	-102185	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
119150	chr19	39384901	39385430	+	0	NA	TTS (NM_001384584)	TTS (NM_001384584)	5941	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
2188	chr1	8536671	8536830	+	0	NA	intron (NM_012102, intron 8 of 23)	intron (NM_012102, intron 8 of 23)	-41837	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
219656	chr8	80488751	80489150	+	0	NA	intron (NM_023929, intron 1 of 6)	intron (NM_023929, intron 1 of 6)	2724	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
62457	chr13	99355801	99358380	+	0	NA	TTS (NR_030353)	TTS (NR_030353)	959	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
163724	chr3	52308801	52309230	+	0	NA	Intergenic	MER96|DNA|hAT-Tip100	-7304	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
8036	chr1	38075651	38075750	+	0	NA	intron (NR_168386, intron 1 of 4)	intron (NR_168386, intron 1 of 4)	-13531	NR_037432	100500801		NR_037432	ENSG00000265596	MIR3659	mir-3659	microRNA 3659	ncRNA
69752	chr14	98994451	98994950	+	0	NA	Intergenic	MLT1J2-int|LTR|ERVL-MaLR	277497	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
174498	chr4	39952701	39952900	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluSq2|SINE|Alu	25111	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
190407	chr5	179813271	179813430	+	0	NA	intron (NM_001142298, intron 2 of 8).2	intron (NM_001142298, intron 2 of 8).2	6341	NM_001142299	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
62935	chr13	111202621	111203280	+	0	NA	promoter-TSS (NM_001320853)	promoter-TSS (NM_001320853)	-110	NM_001320853	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
23406	chr1	228273821	228274080	+	0	NA	exon (NM_001098623, exon 18 of 105)	exon (NM_001098623, exon 18 of 105)	-60286	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
61903	chr13	77328601	77330400	+	0	NA	Intergenic	CpG	-2406	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
153300	chr22	24180521	24180800	+	0	NA	promoter-TSS (NM_019601)	promoter-TSS (NM_019601)	-827	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
39281	chr11	58524411	58525950	+	0	NA	Intergenic	Intergenic	-16880	NM_001005218	219968		NM_001005218	ENSG00000198283	OR5B21	-	olfactory receptor family 5 subfamily B member 21	protein-coding
51155	chr12	50161701	50162200	+	0	NA	intron (NM_001281731, intron 1 of 10)	AluSx|SINE|Alu	5419	NM_001331070	91012		NM_147190	ENSG00000139624	CERS5	LASS5|Trh4	ceramide synthase 5	protein-coding
185047	chr5	115840171	115840530	+	0	NA	intron (NM_004707, intron 1 of 3)	AluSq2|SINE|Alu	1215	NM_001277783	9140		NM_004707	ENSG00000145782	ATG12	APG12|APG12L|FBR93|HAPG12	autophagy related 12	protein-coding
151053	chr21	44694851	44695150	+	0	NA	intron (NM_001272037, intron 1 of 12)	intron (NM_001272037, intron 1 of 12)	-2172	NM_198699	386685		NM_198699	ENSG00000189169	KRTAP10-12	KAP10.12|KRTAP18-12|KRTAP18.12	keratin associated protein 10-12	protein-coding
99382	chr17	49969491	49970680	+	0	NA	intron (NM_138281, intron 1 of 2)	intron (NM_138281, intron 1 of 2)	895	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
9419	chr1	47725921	47726530	+	0	NA	Intergenic	Intergenic	271160	NM_001194986	388630		NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
155176	chr22	37745711	37747500	+	0	NA	promoter-TSS (NR_160696)	promoter-TSS (NR_160696)	371	NM_138632	11078		NM_007032	ENSG00000100106	TRIOBP	DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
163623	chr3	52047901	52048100	+	0	NA	TTS (NM_001947)	TTS (NM_001947)	8571	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
218874	chr8	60530701	60530900	+	0	NA	intron (NM_001242644, intron 1 of 6)	intron (NM_001242644, intron 1 of 6)	13813	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
114292	chr19	11695971	11696130	+	0	NA	Intergenic	Intergenic	22052	NR_028594	401898		NM_001013691		ZNF833P	ZNF833	zinc finger protein 833, pseudogene	pseudo
154212	chr22	31499951	31500250	+	0	NA	intron (NM_001258326, intron 1 of 30)	AluSx1|SINE|Alu	3564	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
99518	chr17	50283221	50283480	+	0	NA	intron (NR_125805, intron 2 of 3)	L2|LINE|L2	4505	NR_125805	103752589		NR_125805	ENSG00000251179	TMEM92-AS1	TCONS_00025237|lncRNA-508851	TMEM92 antisense RNA 1	ncRNA
3221	chr1	13769271	13769430	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	19935	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
143301	chr20	25302001	25302600	+	0	NA	exon (NM_015600, exon 12 of 13)	exon (NM_015600, exon 12 of 13)	54215	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
7242	chr1	32343171	32343880	+	0	NA	Intergenic	Intergenic	-7292	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
16815	chr1	155591671	155592250	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-18210	NM_001350782	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
101821	chr17	73589171	73589330	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	55195	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
154983	chr22	37295221	37296850	+	0	NA	exon (NM_013385, exon 4 of 13)	exon (NM_013385, exon 4 of 13)	13527	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
143034	chr20	21119151	21119450	+	0	NA	Intergenic	Intergenic	-6675	NM_001276389	55857		NM_018474	ENSG00000088970	KIZ	C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69	kizuna centrosomal protein	protein-coding
89335	chr16	88749171	88750080	+	0	NA	intron (NM_001142864, intron 1 of 50)	CpG	6858	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
41113	chr11	65551951	65552580	+	0	NA	exon (NM_001164266, exon 7 of 27)	exon (NM_001164266, exon 7 of 27)	5963	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
4868	chr1	23758901	23759100	+	0	NA	intron (NM_003198, intron 10 of 10)	AluJo|SINE|Alu	15634	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
30358	chr10	77863321	77863580	+	0	NA	intron (NM_004747, intron 2 of 31).2	intron (NM_004747, intron 2 of 31).2	63305	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
68700	chr14	90410821	90411200	+	0	NA	Intergenic	AluY|SINE|Alu	12760	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
174466	chr4	39770171	39770530	+	0	NA	intron (NM_001312647, intron 4 of 6)	intron (NM_001312647, intron 4 of 6)	72214	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
151359	chr21	45768751	45768850	+	0	NA	intron (NM_001348243, intron 3 of 15)	intron (NM_001348243, intron 3 of 15)	20786	NM_001382277	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
114127	chr19	11196701	11198100	+	0	NA	intron (NM_001379563, intron 1 of 13)	CpG	145	NM_001379557	25959		NM_015493	ENSG00000197256	KANK2	ANKRD25|MXRA3|NPHS16|PPKWH|SIP	KN motif and ankyrin repeat domains 2	protein-coding
50652	chr12	48797001	48797200	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	7524	NR_110020	100506125		NR_110019	ENSG00000257660	ADCY6-DT	-	ADCY6 divergent transcript	ncRNA
35644	chr11	1842821	1843400	+	0	NA	Intergenic	Intergenic	2903	NM_001145841	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
162436	chr3	48434601	48435130	+	0	NA	exon (NM_001256964, exon 2 of 4)	exon (NM_001256964, exon 2 of 4)	-4779	NM_001130082	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
177419	chr4	112322951	112323050	+	0	NA	intron (NM_001253884, intron 2 of 14)	intron (NM_001253884, intron 2 of 14)	25631	NM_001102406	80216		NM_025144	ENSG00000073331	ALPK1	8430410J10Rik|LAK|ROSAH	alpha kinase 1	protein-coding
167842	chr3	133927151	133928550	+	0	NA	TTS (NR_161373)	TTS (NR_161373)	1962	NR_161373	80111		NM_025041	ENSG00000288547	C3orf36	-	chromosome 3 putative open reading frame 36	ncRNA
847	chr1	1603671	1603830	+	0	NA	intron (NR_147951, intron 2 of 2)	intron (NR_147951, intron 2 of 2)	-3615	NM_001242659	643988		NM_001242659	ENSG00000228594	FNDC10	C1orf233	fibronectin type III domain containing 10	protein-coding
72760	chr15	39631171	39631530	+	0	NA	intron (NM_001324338, intron 10 of 11)	intron (NM_001324338, intron 10 of 11)	50271	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
213091	chr7	131108601	131109290	+	0	NA	intron (NR_109852, intron 1 of 5)	intron (NR_109852, intron 1 of 5)	971	NR_109850	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
103590	chr17	78710151	78710250	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	6832	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
199310	chr6	112090121	112090380	+	0	NA	intron (NM_001033564, intron 1 of 3)	MLT1I-int|LTR|ERVL-MaLR	2659	NM_001033564	619208		NM_001033564	ENSG00000203778	FAM229B	C6orf225	family with sequence similarity 229 member B	protein-coding
96148	chr17	39674451	39675150	+	0	NA	intron (NM_001291726, intron 2 of 6)	intron (NM_001291726, intron 2 of 6)	6347	NM_002686	5409		NM_002686	ENSG00000141744	PNMT	PENT|PNMTase	phenylethanolamine N-methyltransferase	protein-coding
185229	chr5	122845141	122846550	+	0	NA	intron (NR_146145, intron 1 of 7)	CpG	232	NM_014035	28966		NM_014035	ENSG00000064652	SNX24	PRO1284|SBBI31	sorting nexin 24	protein-coding
67767	chr14	73728421	73729100	+	0	NA	intron (NM_001043318, intron 4 of 11)	L2b|LINE|L2	-14376	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
143978	chr20	32855071	32855630	+	0	NA	Intergenic	Intergenic	-3573	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
135154	chr2	157480451	157480750	+	0	NA	Intergenic	L1M1|LINE|L1	-36511	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
14387	chr1	144179901	144180580	+	0	NA	Intergenic	CpG	67965	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
116851	chr19	18604601	18604800	+	0	NA	intron (NM_004750, intron 1 of 8)	intron (NM_004750, intron 1 of 8)	2099	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
208076	chr7	56089001	56089980	+	0	NA	intron (NR_047689, intron 1 of 8)	AluJr|SINE|Alu	3462	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
124945	chr2	8608501	8608900	+	0	NA	Intergenic	Intergenic	-24908	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
126804	chr2	30421051	30423080	+	0	NA	Intergenic	Intergenic	-25181	NM_001304446	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
23355	chr1	228148771	228148930	+	0	NA	exon (NM_001242840, exon 7 of 7)	exon (NM_001242840, exon 7 of 7)	-1080	NM_020435	57165		NM_020435	ENSG00000198835	GJC2	CX46.6|Cx47|GJA12|HLD2|LMPH1C|LMPHM3|PMLDAR|SPG44	gap junction protein gamma 2	protein-coding
30196	chr10	74590351	74590450	+	0	NA	intron (NM_001369123, intron 8 of 9)	intron (NM_001369123, intron 8 of 9)	-61076	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
22835	chr1	225427211	225429330	+	0	NA	promoter-TSS (NM_002296)	promoter-TSS (NM_002296)	-232	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
193146	chr6	29630301	29630500	+	0	NA	intron (NM_021904, intron 3 of 21).5	intron (NM_021904, intron 3 of 21).5	-2172	NM_021903	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
195805	chr6	41081551	41081850	+	0	NA	intron (NM_002505, intron 3 of 9)	intron (NM_002505, intron 3 of 9)	8726	NM_021705	4800		NM_002505	ENSG00000001167	NFYA	CBF-A|CBF-B|HAP2|NF-YA	nuclear transcription factor Y subunit alpha	protein-coding
72795	chr15	40044801	40045800	+	0	NA	intron (NR_040059, intron 1 of 3)	intron (NR_040059, intron 1 of 3)	5989	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
227893	chr9	93957321	93957730	+	0	NA	non-coding (NR_144455, exon 2 of 2)	non-coding (NR_144455, exon 2 of 2)	1691	NR_144455	101928040		NR_144455	ENSG00000235601	BARX1-DT	BARX1-AS1	BARX1 divergent transcript	ncRNA
176764	chr4	102409021	102409280	+	0	NA	Intergenic	Intergenic	-63668	NM_001135146	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
21803	chr1	207084651	207085030	+	0	NA	Intergenic	Intergenic	-4020	NM_001017365	725		NM_000716	ENSG00000123843	C4BPB	C4BP	complement component 4 binding protein beta	protein-coding
179617	chr4	186057371	186057730	+	0	NA	Intergenic	Intergenic	-11606	NM_003265	7098		NM_003265	ENSG00000164342	TLR3	CD283|IIAE2|IMD83	toll like receptor 3	protein-coding
96841	chr17	41975651	41975750	+	0	NA	TTS (NR_029431)	TTS (NR_029431)	7903	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
204432	chr7	3120501	3121350	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	37648	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
82886	chr16	21566571	21566730	+	0	NA	Intergenic	AluSx|SINE|Alu	-30571	NM_001288659	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
43020	chr11	73995801	73996700	+	0	NA	Intergenic	AluJo|SINE|Alu	12835	NM_003356	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
179789	chr5	352871	353730	+	0	NA	intron (NR_165159, intron 4 of 13)	intron (NR_165159, intron 4 of 13)	30690	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
95790	chr17	38711821	38712450	+	0	NA	intron (NM_005937, intron 7 of 19)	intron (NM_005937, intron 7 of 19)	6862	NM_005937	4302		NM_005937	ENSG00000275023	MLLT6	AF17	MLLT6, PHD finger containing	protein-coding
169387	chr3	160538801	160539000	+	0	NA	intron (NM_002268, intron 1 of 16)	MIR|SINE|MIR	-23664	NR_003001	677767		NR_003001	ENSG00000238741	SCARNA7	U90	small Cajal body-specific RNA 7	ncRNA
6198	chr1	27456321	27456900	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	33557	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
87870	chr16	77721971	77723500	+	0	NA	intron (NM_001105663, intron 1 of 3)	CpG	221	NM_001105663	283927		NM_001105663	ENSG00000140876	NUDT7	-	nudix hydrolase 7	protein-coding
195661	chr6	38012571	38012850	+	0	NA	intron (NM_021943, intron 2 of 5)	intron (NM_021943, intron 2 of 5)	192983	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
165499	chr3	100072721	100073180	+	0	NA	intron (NM_182909, intron 1 of 5)	intron (NM_182909, intron 1 of 5)	41563	NM_001042459	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
192708	chr6	26324601	26325750	+	0	NA	Intergenic	Intergenic	-39641	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
224195	chr9	5446471	5446630	+	0	NA	Intergenic	L2a|LINE|L2	-3953	NM_001267706	29126		NM_014143	ENSG00000120217	CD274	B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1|hPD-L1	CD274 molecule	protein-coding
81311	chr16	4696721	4697100	+	0	NA	intron (NM_133450, intron 17 of 17)	intron (NM_133450, intron 17 of 17)	3192	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
85319	chr16	49857651	49859600	+	0	NA	promoter-TSS (NM_001271620)	promoter-TSS (NM_001271620)	-706	NM_001271620	23090		NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
84596	chr16	30661871	30662030	+	0	NA	intron (NM_001105079, intron 4 of 17)	MER102b|DNA|hAT-Charlie	3519	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
133403	chr2	118842901	118843100	+	0	NA	exon (NM_001426, exon 2 of 2)	exon (NM_001426, exon 2 of 2)	4648	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
176663	chr4	100093301	100094250	+	0	NA	Intergenic	Intergenic	-96258	NR_125924	101929353		NR_125924	ENSG00000249710	DDIT4L-AS1	-	DDIT4L antisense RNA 1	ncRNA
191924	chr6	15522401	15522800	+	0	NA	TTS (NM_004973)	TTS (NM_004973)	140428	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
95765	chr17	38668551	38669330	+	0	NA	Intergenic	Intergenic	6017	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
45626	chr11	118922001	118922480	+	0	NA	intron (NM_001378214, intron 1 of 8)	intron (NM_001378214, intron 1 of 8)	3686	NR_165445	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
117270	chr19	19462171	19463030	+	0	NA	intron (NM_001384522, intron 3 of 13)	intron (NM_001384522, intron 3 of 13)	27537	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
48603	chr12	10326521	10326780	+	0	NA	non-coding (NR_147040, exon 5 of 5)	non-coding (NR_147040, exon 5 of 5)	11642	NR_159946	113523642		NR_159946	ENSG00000256288	LINC02617	-	long intergenic non-protein coding RNA 2617	ncRNA
200720	chr6	137588801	137589880	+	0	NA	Intergenic	L1PB4|LINE|L1	-76306	NR_125867	102723649		NR_125867	ENSG00000230533	LINC03004	-	long intergenic non-protein coding RNA 3004	ncRNA
162897	chr3	49395701	49396230	+	0	NA	intron (NM_001313943, intron 1 of 5)	intron (NM_001313943, intron 1 of 5)	16011	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
116965	chr19	18866201	18867000	+	0	NA	3' UTR (NM_002911, exon 24 of 24)	3' UTR (NM_002911, exon 24 of 24)	29558	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
195251	chr6	36384601	36384800	+	0	NA	intron (NM_001207040, intron 1 of 6)	AluSx4|SINE|Alu	2969	NM_001207038	51513		NM_016135	ENSG00000010030	ETV7	TEL-2|TEL2|TELB	ETS variant transcription factor 7	protein-coding
213821	chr7	141512001	141512250	+	0	NA	Intergenic	Intergenic	-39285	NM_018238	55750		NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
185595	chr5	131407171	131407730	+	0	NA	Intergenic	Intergenic	143397	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
13652	chr1	116538501	116539350	+	0	NA	intron (NR_026665, intron 2 of 5)	MIR|SINE|MIR	21186	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
116205	chr19	17490301	17491250	+	0	NA	intron (NM_198580, intron 6 of 11)	AluSx1|SINE|Alu	20251	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
58441	chr12	132001301	132001780	+	0	NA	intron (NM_015409, intron 12 of 52)	LTR13|LTR|ERVK	-29684	NR_002979	677829		NR_002979	ENSG00000208892	SNORA49	ACA49	small nucleolar RNA, H/ACA box 49	snoRNA
234926	chrX	37776621	37777150	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-3174	NM_000397	1536		NM_000397	ENSG00000165168	CYBB	AMCBX2|CGD|CGDX|GP91-1|GP91-PHOX|GP91PHOX|IMD34|NOX2|p91-PHOX	cytochrome b-245 beta chain	protein-coding
91900	chr17	7294071	7295480	+	0	NA	promoter-TSS (NM_015982)	promoter-TSS (NM_015982)	-136	NM_015982	51087		NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y-box binding protein 2	protein-coding
110342	chr19	1878251	1878350	+	0	NA	intron (NM_001130111, intron 3 of 4)	intron (NM_001130111, intron 3 of 4)	7196	NM_001130111	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
2264	chr1	8920371	8921150	+	0	NA	Intergenic	AluSz6|SINE|Alu	-25108	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
140867	chr2	237472701	237472900	+	0	NA	Intergenic	Intergenic	-13610	NM_001281474	79083		NM_024101	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding
45690	chr11	119054601	119055330	+	0	NA	intron (NM_006389, intron 6 of 25)	intron (NM_006389, intron 6 of 25)	2240	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
19023	chr1	169662971	169663130	+	0	NA	Intergenic	HERV9NC-int|LTR|ERV1	-32926	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
106813	chr18	23987071	23987430	+	0	NA	Intergenic	MLT2B5|LTR|ERVL	-5637	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
143553	chr20	31602551	31603400	+	0	NA	Intergenic	MIRb|SINE|MIR	-2314	NM_002165	3397		NM_002165	ENSG00000125968	ID1	ID|bHLHb24	inhibitor of DNA binding 1	protein-coding
192574	chr6	25865601	25866400	+	0	NA	intron (NM_001098486, intron 2 of 12)	intron (NM_001098486, intron 2 of 12)	8243	NM_001098486	10786		NM_006632	ENSG00000124564	SLC17A3	GOUT4|NPT4|UAQTL4	solute carrier family 17 member 3	protein-coding
84520	chr16	30517101	30517500	+	0	NA	intron (NM_002209, intron 26 of 30)	AluJr|SINE|Alu	9266	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
31270	chr10	92240511	92241350	+	0	NA	intron (NM_014912, intron 1 of 9)	intron (NM_014912, intron 1 of 9)	2349	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
97812	chr17	44847771	44848330	+	0	NA	non-coding (NR_073504, exon 1 of 2)	non-coding (NR_073504, exon 1 of 2)	167	NM_016438	51751		NM_016438	ENSG00000131097	HIGD1B	CLST11240|CLST11240-15	HIG1 hypoxia inducible domain family member 1B	protein-coding
233873	chrX	1556821	1557280	+	0	NA	Intergenic	AluY|SINE|Alu	-19865	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
167129	chr3	127684651	127684950	+	0	NA	Intergenic	Intergenic	11848	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
142737	chr20	10350551	10352430	+	0	NA	Intergenic	MER21C|LTR|ERVL	80435	NM_018848	8195		NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	MKKS centrosomal shuttling protein	protein-coding
227023	chr9	83920761	83922280	+	0	NA	promoter-TSS (NM_001271927)	promoter-TSS (NM_001271927)	24	NM_001271927	55582		NM_017576	ENSG00000165115	KIF27	-	kinesin family member 27	protein-coding
98703	chr17	47943201	47943400	+	0	NA	intron (NM_018129, intron 1 of 6)	intron (NM_018129, intron 1 of 6)	1729	NM_018129	55163		NM_018129	ENSG00000108439	PNPO	HEL-S-302|PDXPO	pyridoxamine 5'-phosphate oxidase	protein-coding
219298	chr8	69834801	69835080	+	0	NA	promoter-TSS (NM_030958)	promoter-TSS (NM_030958)	38	NM_030958	81796		NM_030958	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15	solute carrier organic anion transporter family member 5A1	protein-coding
95726	chr17	38574771	38576280	+	0	NA	intron (NM_025248, intron 2 of 18)	AluJb|SINE|Alu	30427	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
45665	chr11	119022971	119023530	+	0	NA	TTS (NM_001467)	TTS (NM_001467)	4484	NM_001318489	51399		NM_016146	ENSG00000196655	TRAPPC4	CGI-104|HSPC172|NEDESBA|PTD009|SBDN|SYNBINDIN|TRS23	trafficking protein particle complex subunit 4	protein-coding
43096	chr11	74847421	74847680	+	0	NA	intron (NM_001378161, intron 13 of 16)	L2b|LINE|L2	98701	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
236884	chrX	82218401	82218830	+	0	NA	Intergenic	L1PA13|LINE|L1	1016513	NM_003022	6451		NM_003022	ENSG00000131171	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate rich protein like	protein-coding
144369	chr20	35090051	35090800	+	0	NA	intron (NM_199368, intron 1 of 18)	AluSx1|SINE|Alu	2382	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
70948	chr14	104663871	104664630	+	0	NA	intron (NR_135293, intron 1 of 1)	intron (NR_135293, intron 1 of 1)	1308	NR_135293	101929634		NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
176253	chr4	86961471	86961900	+	0	NA	intron (NM_001166693, intron 2 of 20)	intron (NM_001166693, intron 2 of 20)	26683	NM_001166693	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
215181	chr7	155692301	155692680	+	0	NA	intron (NM_053043, intron 5 of 17)	LTR40b|LTR|ERVL	47829	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
147316	chr20	57711401	57711800	+	0	NA	promoter-TSS (NM_199171)	promoter-TSS (NM_199171)	-64	NM_199171	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
151534	chr21	46482271	46482630	+	0	NA	intron (NM_206891, intron 1 of 19)	Tigger3b|DNA|TcMar-Tigger	19979	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
66159	chr14	60398751	60399650	+	0	NA	Intergenic	Intergenic	76004	NR_146481	101927729		NR_146481	ENSG00000258556	LINC02322	-	long intergenic non-protein coding RNA 2322	ncRNA
1925	chr1	6483251	6483350	+	0	NA	intron (NM_198681, intron 2 of 21)	intron (NM_198681, intron 2 of 21)	2169	NM_001265593	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
109867	chr19	1235471	1236450	+	0	NA	intron (NM_152769, intron 2 of 8)	intron (NM_152769, intron 2 of 8)	2045	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
24340	chr1	239717051	239718100	+	0	NA	intron (NR_103776, intron 1 of 2)	intron (NR_103776, intron 1 of 2)	1544	NR_103776	100506915		NR_103776	ENSG00000233355	CHRM3-AS2	-	CHRM3 antisense RNA 2	ncRNA
27816	chr10	38009251	38009550	+	0	NA	Intergenic	AluJo|SINE|Alu	-1250	NM_001278173	7581		NM_006954	ENSG00000189180	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
30120	chr10	74010651	74011100	+	0	NA	intron (NM_014000, intron 1 of 21)	intron (NM_014000, intron 1 of 21)	12759	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
152866	chr22	22403851	22404130	+	0	NA	Intergenic	Intergenic	104752	NR_130643	140883		NM_080764	ENSG00000275004	ZNF280B	5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632	zinc finger protein 280B	protein-coding
6537	chr1	28578871	28579550	+	0	NA	promoter-TSS (NR_003077)	promoter-TSS (NR_003077)	-388	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	small nucleolar RNA, C/D box 99	snoRNA
206585	chr7	35709271	35710200	+	0	NA	Intergenic	Intergenic	-6702	NR_108083	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
226474	chr9	71747451	71747830	+	0	NA	intron (NM_001135820, intron 2 of 22)	intron (NM_001135820, intron 2 of 22)	20873	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
127344	chr2	39117951	39118250	+	0	NA	intron (NM_001382394, intron 1 of 22)	L2c|LINE|L2	2951	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
168771	chr3	151276351	151276990	+	0	NA	intron (NM_014879, intron 1 of 2)	intron (NM_014879, intron 1 of 2)	1872	NM_014879	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
25722	chr10	9015371	9015930	+	0	NA	Intergenic	Intergenic	117661	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
166302	chr3	112582301	112582500	+	0	NA	intron (NM_001348909, intron 5 of 5)	intron (NM_001348909, intron 5 of 5)	20355	NM_001348909	55032		NM_017945	ENSG00000138459	SLC35A5	-	solute carrier family 35 member A5	protein-coding
162027	chr3	46628971	46629200	+	0	NA	Intergenic	Intergenic	16560	NM_001195442	100132146		NM_001195442	ENSG00000283473	FAM240A	-	family with sequence similarity 240 member A	protein-coding
160245	chr3	23980671	23980830	+	0	NA	TTS (NM_001145425)	TTS (NM_001145425)	-34188	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
224776	chr9	22010521	22011430	+	0	NA	intron (NR_047543, intron 1 of 8)	intron (NR_047543, intron 1 of 8)	-1662	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
85508	chr16	50768571	50768730	+	0	NA	intron (NM_015247, intron 7 of 19)	intron (NM_015247, intron 7 of 19)	26235	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
70771	chr14	103480401	103481000	+	0	NA	intron (NM_002376, intron 14 of 15)	intron (NM_002376, intron 14 of 15)	42130	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
223483	chr8	144057271	144057430	+	0	NA	promoter-TSS (NR_106905)	promoter-TSS (NR_106905)	30	NR_106905	102465509		NR_106905	ENSG00000277888	MIR6846	hsa-mir-6846	microRNA 6846	ncRNA
121840	chr19	48169101	48170000	+	0	NA	intron (NR_135497, intron 1 of 27)	intron (NR_135497, intron 1 of 27)	794	NR_135497	3978		NM_000234	ENSG00000105486	LIG1	IMD96|LIGI|hLig1	DNA ligase 1	protein-coding
118172	chr19	35035051	35035550	+	0	NA	3' UTR (NM_199037, exon 3 of 3)	3' UTR (NM_199037, exon 3 of 3)	4029	NM_001321605	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
75933	chr15	70243021	70243280	+	0	NA	Intergenic	Intergenic	-145233	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
74048	chr15	52483771	52484250	+	0	NA	intron (NM_000259, intron 1 of 40)	intron (NM_000259, intron 1 of 40)	44870	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
150736	chr21	43754401	43754600	+	0	NA	intron (NM_001331030, intron 8 of 9)	intron (NM_001331030, intron 8 of 9)	13014	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
121375	chr19	46863271	46863880	+	0	NA	intron (NM_004491, intron 1 of 6)	intron (NM_004491, intron 1 of 6)	2578	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
180811	chr5	32416451	32416750	+	0	NA	intron (NR_144318, intron 4 of 18)	AluSp|SINE|Alu	-22125	NR_030305	693164		NR_030305	ENSG00000207956	MIR579	MIRN579|hsa-mir-579	microRNA 579	ncRNA
210943	chr7	101282501	101283580	+	0	NA	Intergenic	Intergenic	-16573	NR_146480	101927721		NR_146480	ENSG00000232301	LNCPRESS1	-	lncRNA p53 regulated and ESC associated 1	ncRNA
65793	chr14	54629551	54629850	+	0	NA	intron (NM_015589, intron 2 of 12)	L1MB3|LINE|L1	62088	NM_001161576	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
181633	chr5	49551451	49551550	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	889788	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
93489	chr17	18959171	18959530	+	0	NA	intron (NM_152351, intron 3 of 14)	intron (NM_152351, intron 3 of 14)	7185	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
209109	chr7	74927001	74927280	+	0	NA	Intergenic	Intergenic	-12062	NM_001382555	100101268		NM_001382555	ENSG00000184616	SPDYE12	SPDYE12P	speedy/RINGO cell cycle regulator family member E12	protein-coding
118404	chr19	35751971	35752130	+	0	NA	intron (NM_001369780, intron 1 of 8)	intron (NM_001369780, intron 1 of 8)	3236	NM_001369780	55957		NM_019104	ENSG00000267796	LIN37	F25965|ZK418.4|lin-37	lin-37 DREAM MuvB core complex component	protein-coding
180536	chr5	14594521	14594890	+	0	NA	intron (NM_019018, intron 1 of 7)	intron (NM_019018, intron 1 of 7)	12913	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
128451	chr2	55611821	55612130	+	0	NA	intron (NM_020463, intron 2 of 14)	AluJo|SINE|Alu	5647	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
139107	chr2	218907651	218907980	+	0	NA	intron (NR_110238, intron 3 of 4)	intron (NR_110238, intron 3 of 4)	22822	NR_110238	101928537		NR_110238	ENSG00000228135	LINC01494	-	long intergenic non-protein coding RNA 1494	ncRNA
102452	chr17	75698421	75698880	+	0	NA	intron (NR_126036, intron 4 of 9)	intron (NR_126036, intron 4 of 9)	-22809	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
47106	chr12	667671	668350	+	0	NA	Intergenic	Intergenic	-4565	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
11291	chr1	89261271	89261430	+	0	NA	intron (NM_001134486, intron 10 of 10)	intron (NM_001134486, intron 10 of 10)	11510	NM_001134486	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
15299	chr1	149846801	149847280	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	3733	NR_036461	337873		NR_036461	ENSG00000261716	H2BC20P	H2B/t|HIST2H2BC|HIST2H2BD|LETN	H2B clustered histone 20, pseudogene	pseudo
152898	chr22	22735121	22735680	+	0	NA	Intergenic	Intergenic	-87376	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
112818	chr19	7515801	7516980	+	0	NA	intron (NM_018083, intron 1 of 1)	CpG	287	NM_018083	140467		NM_018083	ENSG00000198816	ZNF358	ZFEND	zinc finger protein 358	protein-coding
9878	chr1	54330571	54330930	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	75644	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
175914	chr4	80196201	80196630	+	0	NA	5' UTR (NM_020226, exon 5 of 10)	5' UTR (NM_020226, exon 5 of 10)	-1088	NM_001099403	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
172723	chr4	2809921	2810500	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	-2081	NM_001145855	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
82444	chr16	16341221	16341550	+	0	NA	intron (NR_036447, intron 27 of 30)	intron (NR_036447, intron 27 of 30)	5455	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
162249	chr3	47280221	47280480	+	0	NA	intron (NM_022342, intron 1 of 19)	intron (NM_022342, intron 1 of 19)	2248	NM_001377477	64147		NM_022342	ENSG00000088727	KIF9	-	kinesin family member 9	protein-coding
67916	chr14	74617001	74617600	+	0	NA	Intergenic	Intergenic	-5063	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
7609	chr1	35431071	35431630	+	0	NA	Intergenic	Intergenic	-65273	NR_046659	100861513		NR_046659	ENSG00000227409	ZMYM4-AS1	-	ZMYM4 antisense RNA 1	ncRNA
159388	chr3	13417521	13418130	+	0	NA	intron (NM_024923, intron 1 of 39)	intron (NM_024923, intron 1 of 39)	2497	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
140438	chr2	233141921	233143050	+	0	NA	intron (NM_001017915, intron 6 of 26).2	intron (NM_001017915, intron 6 of 26).2	82143	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
235852	chrX	50168971	50169130	+	0	NA	Intergenic	L1MB8|LINE|L1	31322	NM_139289	8852		NM_003886	ENSG00000147081	AKAP4	AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82	A-kinase anchoring protein 4	protein-coding
6835	chr1	31025201	31025730	+	0	NA	intron (NM_014676, intron 3 of 21)	intron (NM_014676, intron 3 of 21)	40252	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
189622	chr5	176020551	176021050	+	0	NA	Intergenic	MER54A|LTR|ERVL	41255	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
90897	chr17	2415851	2416630	+	0	NA	promoter-TSS (NR_028335)	promoter-TSS (NR_028335)	-804	NR_028335	284009		NM_001025459		LOC284009	-	uncharacterized LOC284009	ncRNA
145572	chr20	44478021	44478630	+	0	NA	intron (NM_001039199, intron 1 of 4)	LTR16B|LTR|ERVL	2451	NM_001261839	79183		NM_024331	ENSG00000124120	TTPAL	C20orf121	alpha tocopherol transfer protein like	protein-coding
226102	chr9	62840471	62840730	+	0	NA	promoter-TSS (NR_135010)	promoter-TSS (NR_135010)	-45	NR_135010	442421		NR_024496		PTGER4P2-CDK2AP2P2	-	PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene	pseudo
12166	chr1	100351071	100351900	+	0	NA	promoter-TSS (NM_033313)	promoter-TSS (NM_033313)	-982	NM_033313	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
99309	chr17	49817401	49818430	+	0	NA	exon (NM_007067, exon 9 of 15)	exon (NM_007067, exon 9 of 15)	-27971	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
237638	chrX	124212551	124213000	+	0	NA	Intergenic	Intergenic	-119885	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
11562	chr1	91387251	91387500	+	0	NA	intron (NR_165455, intron 4 of 32)	LSU-rRNA_Hsa|rRNA|rRNA	17360	NR_165455	164045		NM_001017975	ENSG00000162669	HFM1	MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase	helicase for meiosis 1	protein-coding
228275	chr9	98070971	98071680	+	0	NA	intron (NM_018946, intron 2 of 5)	intron (NM_018946, intron 2 of 5)	14593	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
42031	chr11	67432451	67432750	+	0	NA	exon (NM_003952, exon 6 of 15)	exon (NM_003952, exon 6 of 15)	4106	NM_003952	6199		NM_003952	ENSG00000175634	RPS6KB2	KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb	ribosomal protein S6 kinase B2	protein-coding
181734	chr5	50692451	50693080	+	0	NA	intron (NM_024615, intron 2 of 25)	L2c|LINE|L2	25351	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
101091	chr17	64961671	64962480	+	0	NA	Intergenic	Intergenic	13510	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
211590	chr7	105803401	105803600	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	73085	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
219266	chr8	67340451	67340900	+	0	NA	intron (NM_006421, intron 1 of 38)	intron (NM_006421, intron 1 of 38)	3106	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
145465	chr20	43723921	43724580	+	0	NA	Intergenic	Intergenic	2752	NM_001008901	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
178846	chr4	153785871	153786400	+	0	NA	intron (NM_003013, intron 1 of 2)	intron (NM_003013, intron 1 of 2)	2948	NM_003013	6423		NM_003013	ENSG00000145423	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled related protein 2	protein-coding
155795	chr22	39299151	39299450	+	0	NA	Intergenic	Intergenic	14611	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
144063	chr20	33673851	33675000	+	0	NA	promoter-TSS (NM_031231)	promoter-TSS (NM_031231)	3	NM_031231	63941		NM_031231	ENSG00000125967	NECAB3	APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5	N-terminal EF-hand calcium binding protein 3	protein-coding
115715	chr19	16232471	16233280	+	0	NA	intron (NM_001130524, intron 10 of 12)	intron (NM_001130524, intron 10 of 12)	34964	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
25214	chr10	5775451	5776780	+	0	NA	intron (NM_001115156, intron 5 of 9)	intron (NM_001115156, intron 5 of 9)	37319	NM_001494	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
109438	chr19	728901	729300	+	0	NA	intron (NM_002579, intron 4 of 8)	AluSx1|SINE|Alu	20165	NM_002579	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
51994	chr12	53963771	53964200	+	0	NA	non-coding (NR_047518, exon 4 of 4)	non-coding (NR_047518, exon 4 of 4)	4771	NR_003716	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
110193	chr19	1678821	1679350	+	0	NA	Intergenic	Intergenic	-26470	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
167994	chr3	136748101	136748630	+	0	NA	intron (NM_005862, intron 1 of 33)	AluSx3|SINE|Alu	4013	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
16008	chr1	152033501	152033700	+	0	NA	intron (NM_005620, intron 2 of 2)	intron (NM_005620, intron 2 of 2)	3404	NM_005620	6282		NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
150113	chr21	37459051	37459350	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	38901	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
172624	chr4	2522971	2523450	+	0	NA	Intergenic	AluSx|SINE|Alu	-12165	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
78327	chr15	90987201	90987680	+	0	NA	intron (NM_199413, intron 1 of 13)	L1ME3A|LINE|L1	7095	NM_199413	9055		NM_003981	ENSG00000198901	PRC1	ASE1|MAP65	protein regulator of cytokinesis 1	protein-coding
57847	chr12	123265951	123266480	+	0	NA	intron (NM_004642, intron 2 of 3)	intron (NM_004642, intron 2 of 3)	2039	NM_001270434	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
84671	chr16	30757951	30758330	+	0	NA	3' UTR (NM_000294, exon 10 of 10)	3' UTR (NM_000294, exon 10 of 10)	-3472	NM_001207034	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
227329	chr9	89448301	89449250	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	31115	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
220741	chr8	102178121	102178380	+	0	NA	Intergenic	Intergenic	52818	NR_049859	100847001		NR_049859	ENSG00000266756	MIR5680	-	microRNA 5680	ncRNA
171758	chr3	198167621	198168100	+	0	NA	non-coding (NR_146164, exon 4 of 18)	non-coding (NR_146164, exon 4 of 18)	14654	NR_146164	728262		NM_001145248	ENSG00000290937	FAM157A	GTF2IP18	family with sequence similarity 157 member A	ncRNA
81646	chr16	10941721	10942980	+	0	NA	5' UTR (NM_014015, exon 1 of 2)	5' UTR (NM_014015, exon 1 of 2)	118	NM_014015	28955		NM_014015	ENSG00000182108	DEXI	MYLE	Dexi homolog	protein-coding
78129	chr15	90376651	90377750	+	0	NA	Intergenic	Intergenic	-11042	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
134038	chr2	131103751	131103850	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1047	NM_001267062	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
151086	chr21	44829621	44829880	+	0	NA	Intergenic	L1MEf|LINE|L1	-11621	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
33344	chr10	117004721	117005350	+	0	NA	exon (NM_001127211, exon 1 of 17)	exon (NM_001127211, exon 1 of 17)	152	NM_001127211	57698		NM_018330	ENSG00000187164	SHTN1	KIAA1598|shootin-1	shootin 1	protein-coding
205634	chr7	22569871	22570030	+	0	NA	intron (NR_038393, intron 2 of 3)	intron (NR_038393, intron 2 of 3)	6613	NR_038393	100506178		NR_038393	ENSG00000232759	STEAP1B-AS1	-	STEAP1B antisense RNA 1	ncRNA
154606	chr22	36297651	36298350	+	0	NA	intron (NM_002473, intron 24 of 40)	intron (NM_002473, intron 24 of 40)	-11093	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
30731	chr10	84136251	84136550	+	0	NA	Intergenic	Intergenic	-3109	NM_014394	27069		NM_014394	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
35973	chr11	2853651	2854230	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	7629	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
51068	chr12	49867071	49868180	+	0	NA	3' UTR (NM_012306, exon 12 of 12)	3' UTR (NM_012306, exon 12 of 12)	-24519	NM_181708	144233		NM_181708	ENSG00000186666	BCDIN3D	-	BCDIN3 domain containing RNA methyltransferase	protein-coding
95203	chr17	35237921	35238180	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-5022	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
103071	chr17	77285071	77285230	+	0	NA	intron (NM_001293695, intron 1 of 10)	intron (NM_001293695, intron 1 of 10)	-2741	NM_001113492	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
224749	chr9	21812351	21812450	+	0	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	9764	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
81428	chr16	8851921	8852380	+	0	NA	TTS (NM_014316)	TTS (NM_014316)	2681	NR_147908	100130283		NR_147908	ENSG00000140650	LOC100130283	-	uncharacterized LOC100130283	ncRNA
26249	chr10	14645121	14645680	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-40999	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
50766	chr12	49026771	49027730	+	0	NA	exon (NM_003482, exon 49 of 55)	exon (NM_003482, exon 49 of 55)	-8474	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
213570	chr7	139337251	139338780	+	0	NA	Intergenic	AluJr|SINE|Alu	-2344	NM_001244585	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
98226	chr17	46151221	46151830	+	0	NA	intron (NM_015443, intron 2 of 14).2	L2a|LINE|L2	41257	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
236011	chrX	54816501	54816700	+	0	NA	TTS (NM_177433)	TTS (NM_177433)	2230	NR_002953	677799		NR_002953	ENSG00000221716	SNORA11	SNORA11A|U107	small nucleolar RNA, H/ACA box 11	snoRNA
172170	chr4	1226551	1226980	+	0	NA	intron (NM_001377193, intron 4 of 9)	intron (NM_001377193, intron 4 of 9)	16645	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
163945	chr3	52820601	52821000	+	0	NA	intron (NM_001166449, intron 12 of 21)	intron (NM_001166449, intron 12 of 21)	-3135	NR_046615	100873993		NR_046615	ENSG00000239799	ITIH4-AS1	-	ITIH4 antisense RNA 1	ncRNA
25655	chr10	8334771	8334930	+	0	NA	Intergenic	MIR|SINE|MIR	-66545	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
154956	chr22	37260621	37261500	+	0	NA	Intergenic	L2|LINE|L2	-16791	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
60484	chr13	41244451	41244750	+	0	NA	intron (NM_004294, intron 5 of 9)	MLT1F|LTR|ERVL-MaLR	18976	NM_004294	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
118096	chr19	34401471	34402750	+	0	NA	3' UTR (NM_001329911, exon 18 of 18)	3' UTR (NM_001329911, exon 18 of 18)	-2288	NM_001353433	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
158016	chr22	49907871	49908030	+	0	NA	intron (NM_024105, intron 6 of 9)	intron (NM_024105, intron 6 of 9)	10488	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
220412	chr8	100271601	100272000	+	0	NA	intron (NM_183419, intron 3 of 9)	intron (NM_183419, intron 3 of 9)	30393	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
56502	chr12	116279001	116279380	+	0	NA	Intergenic	MIRb|SINE|MIR	-1497	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
6253	chr1	27560871	27561230	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	42444	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
219784	chr8	81147101	81147530	+	0	NA	Intergenic	Intergenic	-35247	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
99107	chr17	49195521	49196180	+	0	NA	Intergenic	L1M5|LINE|L1	13531	NM_031498	2793		NM_031498	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG9|GNGT8|HG3I	G protein subunit gamma transducin 2	protein-coding
216769	chr8	22493671	22493830	+	0	NA	intron (NM_005605, intron 3 of 13)	Tigger3b|DNA|TcMar-Tigger	52672	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
19393	chr1	174093821	174094080	+	0	NA	Intergenic	L2c|LINE|L2	65337	NR_121197	102724601		NR_121197	ENSG00000227373	RABGAP1L-DT	-	RABGAP1L divergent transcript	ncRNA
13725	chr1	116801651	116802400	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	47595	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
76142	chr15	72605071	72605230	+	0	NA	Intergenic	Intergenic	17933	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
77005	chr15	78453551	78453650	+	0	NA	intron (NM_001320942, intron 2 of 21)	L2c|LINE|L2	15179	NM_001320942	3658		NM_004136	ENSG00000136381	IREB2	ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA	iron responsive element binding protein 2	protein-coding
193838	chr6	31527451	31527750	+	0	NA	Intergenic	MIRb|SINE|MIR	-1362	NM_001011700	401250		NM_001011700	ENSG00000204511	MCCD1	-	mitochondrial coiled-coil domain 1	protein-coding
180317	chr5	5529671	5529830	+	0	NA	Intergenic	AluY|SINE|Alu	107073	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
83619	chr16	28208571	28209080	+	0	NA	intron (NM_015171, intron 1 of 23)	intron (NM_015171, intron 1 of 23)	3140	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
205733	chr7	23493351	23494330	+	0	NA	Intergenic	AluJo|SINE|Alu	3452	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
28222	chr10	45352771	45352930	+	0	NA	Intergenic	Intergenic	-21316	NM_001256154	240		NM_000698	ENSG00000012779	ALOX5	5-LO|5-LOX|5LPG|LOG5	arachidonate 5-lipoxygenase	protein-coding
84869	chr16	31174001	31174350	+	0	NA	Intergenic	AluJr|SINE|Alu	-5935	NM_001170634	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
130463	chr2	85541571	85542180	+	0	NA	exon (NM_005911, exon 5 of 9)	exon (NM_005911, exon 5 of 9)	2707	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
187866	chr5	148231051	148231150	+	0	NA	Intergenic	L1PA3|LINE|L1	-7425	NM_001363511	105378220		NM_001363511	ENSG00000248109	MARCOL	-	MARCO like	protein-coding
141206	chr2	239369551	239370830	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	-18386	NR_039948	100616360		NR_039948	ENSG00000264292	MIR2467	mir-2467	microRNA 2467	ncRNA
54573	chr12	92378801	92379480	+	0	NA	Intergenic	Intergenic	-42391	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
219683	chr8	80542921	80543650	+	0	NA	Intergenic	Intergenic	57059	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
198991	chr6	110911001	110911200	+	0	NA	Intergenic	AluSz6|SINE|Alu	36316	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
156403	chr22	41170701	41171100	+	0	NA	intron (NM_001362843, intron 26 of 29)	AluY|SINE|Alu	26601	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
184819	chr5	111256001	111256330	+	0	NA	intron (NM_001744, intron 1 of 10)	L1MD2|LINE|L1	31781	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
71230	chr14	105173151	105173630	+	0	NA	intron (NM_177533, intron 4 of 4)	MLT1E1|LTR|ERVL-MaLR	-4614	NM_145159	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
177523	chr4	118590071	118590500	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-1459	NR_109983	729218		NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
207290	chr7	43997601	43997800	+	0	NA	promoter-TSS (NM_001378423)	promoter-TSS (NM_001378423)	-168	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
217414	chr8	28377321	28377580	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	9010	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
43326	chr11	76382451	76382850	+	0	NA	3' UTR (NM_001305225, exon 1 of 1)	3' UTR (NM_001305225, exon 1 of 1)	1327	NM_001347884	100506127		NM_001013634	ENSG00000179240	GVQW3	-	GVQW motif containing 3	protein-coding
1349	chr1	2483651	2484150	+	0	NA	intron (NM_001303013, intron 4 of 21)	CpG	7585	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
41875	chr11	67238771	67240500	+	0	NA	promoter-TSS (NM_001256405)	promoter-TSS (NM_001256405)	-379	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
126426	chr2	27767821	27768280	+	0	NA	Intergenic	Intergenic	-3667	NM_145330	9553		NM_004891	ENSG00000243147	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L|bL33m	mitochondrial ribosomal protein L33	protein-coding
102920	chr17	76572671	76573480	+	0	NA	intron (NM_006456, intron 4 of 8)	intron (NM_006456, intron 4 of 8)	11442	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
79388	chr16	658601	658800	+	0	NA	intron (NM_145294, intron 23 of 40)	intron (NM_145294, intron 23 of 40)	9335	NM_145294	197335		NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19|POC16	WD repeat domain 90	protein-coding
13917	chr1	120067101	120067500	+	0	NA	intron (NM_001200001, intron 1 of 21)	intron (NM_001200001, intron 1 of 21)	2362	NM_024408	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
138595	chr2	208100351	208101280	+	0	NA	Intergenic	Intergenic	-18314	NR_038437	100507443		NR_038437		LOC100507443	-	uncharacterized LOC100507443	ncRNA
123395	chr19	53924421	53924880	+	0	NA	intron (NM_001384801, intron 4 of 4)	intron (NM_001384801, intron 4 of 4)	15372	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
16173	chr1	153782151	153782530	+	0	NA	Intergenic	Intergenic	6933	NM_001317929	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
189400	chr5	172758621	172759200	+	0	NA	intron (NR_161233, intron 2 of 3)	L2a|LINE|L2	3407	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
178879	chr4	155442371	155442730	+	0	NA	Intergenic	Intergenic	-65585	NM_001039580	79884		NM_024826	ENSG00000164114	MAP9	ASAP	microtubule associated protein 9	protein-coding
155822	chr22	39347721	39347980	+	0	NA	Intergenic	AluY|SINE|Alu	-2099	NM_145731	9145		NM_004711	ENSG00000100321	SYNGR1	-	synaptogyrin 1	protein-coding
9528	chr1	51462171	51462730	+	0	NA	intron (NM_001981, intron 7 of 24)	L2|LINE|L2	-40355	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
197673	chr6	85482821	85483330	+	0	NA	intron (NM_002526, intron 3 of 8)	intron (NM_002526, intron 3 of 8)	32992	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
109361	chr19	631201	631550	+	0	NA	intron (NM_005035, intron 2 of 20)	AluSc8|SINE|Alu	2162	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
1977	chr1	6598751	6600230	+	0	NA	intron (NM_014851, intron 1 of 3)	intron (NM_014851, intron 1 of 3)	3379	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
117430	chr19	19644971	19645130	+	0	NA	TTS (NM_020410)	TTS (NM_020410)	-1393	NM_001288999	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
29080	chr10	67903051	67903730	+	0	NA	intron (NM_001142498, intron 3 of 7)	AluY|SINE|Alu	11988	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
216835	chr8	22589951	22591000	+	0	NA	intron (NM_198042, intron 7 of 7)	intron (NM_198042, intron 7 of 7)	-9124	NM_001013842	541565		NM_173686	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
187898	chr5	148831901	148832550	+	0	NA	Intergenic	Intergenic	5614	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
235780	chrX	49099571	49099730	+	0	NA	intron (NM_007075, intron 2 of 11)	AluY|SINE|Alu	1471	NM_007075	11152		NM_007075	ENSG00000196998	WDR45	JM5|NBIA4|NBIA5|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
61585	chr13	72779501	72780080	+	0	NA	intron (NM_001322348, intron 1 of 19)	MER20|DNA|hAT-Charlie	2110	NM_001322349	22894		NM_014953	ENSG00000083520	DIS3	2810028N01Rik|EXOSC11|KIAA1008|RRP44|dis3p	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding
96787	chr17	41802901	41803330	+	0	NA	intron (NM_006455, intron 7 of 7)	intron (NM_006455, intron 7 of 7)	8834	NM_006455	10609		NM_006455	ENSG00000141696	P3H4	LEPREL4|NO55|NOL55|SC65	prolyl 3-hydroxylase family member 4 (inactive)	protein-coding
18799	chr1	167621921	167622380	+	0	NA	Intergenic	L2a|LINE|L2	-8043	NM_001322923	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
70251	chr14	101595321	101595650	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	34134	NM_001362	1735		NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	iodothyronine deiodinase 3	protein-coding
180084	chr5	1112771	1112930	+	0	NA	promoter-TSS (NM_006598).2	promoter-TSS (NM_006598).2	-787	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
153182	chr22	23840471	23840630	+	0	NA	intron (NR_003082, intron 4 of 4)	AluSx1|SINE|Alu	-1544	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
66357	chr14	61462821	61463350	+	0	NA	intron (NM_006255, intron 9 of 13)	MIRb|SINE|MIR	107109	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
124724	chr2	4092021	4092100	+	0	NA	Intergenic	L1MA5|LINE|L1	117899	NR_136322	105373394		NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
78097	chr15	90251521	90251780	+	0	NA	intron (NR_104604, intron 3 of 9)	intron (NR_104604, intron 3 of 9)	2118	NR_104604								
79512	chr16	799951	800750	+	0	NA	intron (NM_016541, intron 1 of 2)	CpG	384	NM_016541	51764		NM_016541	ENSG00000127588	GNG13	G(gamma)13|HG3J|h2-35	G protein subunit gamma 13	protein-coding
68293	chr14	77151851	77152450	+	0	NA	Intergenic	Intergenic	-10359	NM_174976	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
73408	chr15	42918251	42918750	+	0	NA	intron (NM_173500, intron 1 of 14)	intron (NM_173500, intron 1 of 14)	2278	NM_173500	146057		NM_173500	ENSG00000128881	TTBK2	SCA11|TTBK	tau tubulin kinase 2	protein-coding
14102	chr1	120918701	120919830	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-5151	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
197774	chr6	87591201	87591400	+	0	NA	intron (NM_181837, intron 1 of 19)	Tigger9a|DNA|TcMar-Tigger	1165	NM_012381	23595		NM_012381	ENSG00000135336	ORC3	LAT|LATHEO|ORC3L	origin recognition complex subunit 3	protein-coding
47288	chr12	1655221	1655580	+	0	NA	Intergenic	Intergenic	4980	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
28675	chr10	60652671	60652830	+	0	NA	intron (NM_001204403, intron 1 of 43)	intron (NM_001204403, intron 1 of 43)	-79794	NM_001204404	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
213243	chr7	134102501	134102700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-24740	NM_001365700	136332		NM_144648	ENSG00000155530	LRGUK	CFAP246	leucine rich repeats and guanylate kinase domain containing	protein-coding
73160	chr15	41438721	41439000	+	0	NA	intron (NM_015138, intron 2 of 17)	AluSx|SINE|Alu	21756	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
31750	chr10	97788751	97789100	+	0	NA	Intergenic	MIRb|SINE|MIR	-16926	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
213327	chr7	135212801	135213000	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-1374	NM_001362737	29062		NM_014149	ENSG00000105875	WDR91	HSPC049|SORF-1|SORF1	WD repeat domain 91	protein-coding
174147	chr4	36239771	36239930	+	0	NA	intron (NR_146894, intron 1 of 32)	intron (NR_146894, intron 1 of 32)	4089	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
162276	chr3	47362521	47363200	+	0	NA	Intergenic	MIRc|SINE|MIR	-18161	NM_001304482	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
105610	chr18	713571	713730	+	0	NA	promoter-TSS (NR_148706)	promoter-TSS (NR_148706)	-986	NR_148711	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
134974	chr2	152335051	152336480	+	0	NA	intron (NM_052905, intron 1 of 25)	CpG	591	NM_052905	114793		NM_052905	ENSG00000157827	FMNL2	FHOD2	formin like 2	protein-coding
28714	chr10	61835101	61835500	+	0	NA	Intergenic	Intergenic	-66399	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
69666	chr14	98015951	98016550	+	0	NA	Intergenic	Intergenic	-38126	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
140361	chr2	232723071	232723580	+	0	NA	intron (NR_103495, intron 3 of 4)	intron (NR_103495, intron 3 of 4)	-11092	NR_103492	26058		NM_015575	ENSG00000204120	GIGYF2	GYF2|PARK11|PERQ2|PERQ3|TNRC15	GRB10 interacting GYF protein 2	protein-coding
205116	chr7	6857501	6858450	+	0	NA	Intergenic	Intergenic	-31700	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
136300	chr2	174781851	174781950	+	0	NA	Intergenic	Intergenic	-17428	NM_000079	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
38953	chr11	47524701	47524900	+	0	NA	promoter-TSS (NM_001376369)	promoter-TSS (NM_001376369)	-96	NM_001376369	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
118068	chr19	34336571	34337300	+	0	NA	intron (NM_014686, intron 8 of 13)	intron (NM_014686, intron 8 of 13)	-27805	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
108894	chr18	79419401	79419600	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	19201	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
150360	chr21	42193101	42193980	+	0	NA	Intergenic	Intergenic	-6149	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
47939	chr12	6828471	6829950	+	0	NA	intron (NM_014262, intron 1 of 14)	CpG	803	NM_014262	10536		NM_014262	ENSG00000110811	P3H3	GRCB|HSU47926|LEPREL2	prolyl 3-hydroxylase 3	protein-coding
204272	chr7	2641471	2642130	+	0	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	9814	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
191745	chr6	13769551	13769930	+	0	NA	Intergenic	CpG	44820	NM_001031713	63933		NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
124623	chr2	1366601	1366800	+	0	NA	intron (NM_018968, intron 16 of 16)	intron (NM_018968, intron 16 of 16)	-46761	NM_000547	7173		NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
231893	chr9	133057121	133057680	+	0	NA	intron (NM_012087, intron 10 of 10)	intron (NM_012087, intron 10 of 10)	-4581	NM_001807	1056		NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
73195	chr15	41510651	41510750	+	0	NA	intron (NM_206961, intron 6 of 18)	AluSq2|SINE|Alu	3127	NM_002344	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
147537	chr20	59442471	59442630	+	0	NA	Intergenic	(GTGCCT)n|Simple_repeat|Simple_repeat	-134959	NM_001199505	116154		NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
193467	chr6	30526671	30527030	+	0	NA	Intergenic	L1PA6|LINE|L1	10584	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
7632	chr1	35563101	35563630	+	0	NA	exon (NM_001014839, exon 6 of 8)	exon (NM_001014839, exon 6 of 8)	5566	NM_014284	23154		NM_014284	ENSG00000020129	NCDN	NEDIES	neurochondrin	protein-coding
41020	chr11	65436101	65436930	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	-7943	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
98514	chr17	47530351	47532900	+	0	NA	intron (NM_006310, intron 1 of 22)	intron (NM_006310, intron 1 of 22)	517	NM_006310	9520		NM_006310	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
150905	chr21	44166371	44166730	+	0	NA	Intergenic	Intergenic	-6688	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
157862	chr22	49305201	49305480	+	0	NA	Intergenic	Intergenic	238126	NR_037440	100500882		NR_037440	ENSG00000264139	MIR3667	-	microRNA 3667	ncRNA
30577	chr10	80058871	80059180	+	0	NA	intron (NR_027431, intron 2 of 4)	intron (NR_027431, intron 2 of 4)	-19621	NM_001270372	80195		NM_025125	ENSG00000133678	TMEM254	C10orf57|bA369J21.6	transmembrane protein 254	protein-coding
83311	chr16	24544051	24544430	+	0	NA	intron (NM_032626, intron 1 of 2)	intron (NM_032626, intron 1 of 2)	4653	NM_032626	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
36646	chr11	7892801	7893230	+	0	NA	intron (NR_036678, intron 1 of 7)	intron (NR_036678, intron 1 of 7)	12940	NR_036678	283299		NM_001190788	ENSG00000254951	LOC283299	-	uncharacterized LOC283299	ncRNA
173455	chr4	8412101	8412300	+	0	NA	intron (NM_001375787, intron 5 of 17)	intron (NM_001375787, intron 5 of 17)	16248	NM_001375787	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
6398	chr1	27943301	27944100	+	0	NA	intron (NM_001304579, intron 1 of 7)	intron (NM_001304579, intron 1 of 7)	8700	NM_001304579	27293		NM_014474	ENSG00000130768	SMPDL3B	ASML3B	sphingomyelin phosphodiesterase acid like 3B	protein-coding
59186	chr13	22064721	22065200	+	0	NA	Intergenic	Intergenic	-145325	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
55077	chr12	96824251	96824750	+	0	NA	intron (NM_001367885, intron 66 of 68)	intron (NM_001367885, intron 66 of 68)	-82757	NM_152905	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
3712	chr1	16610071	16610430	+	0	NA	intron (NM_017940, intron 1 of 28)	intron (NM_017940, intron 1 of 28)	3314	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
113403	chr19	9431151	9432050	+	0	NA	intron (NM_001370382, intron 3 of 9)	LTR41B|LTR|ERVL	3973	NM_001370384	10781		NM_006631	ENSG00000174652	ZNF266	HZF1	zinc finger protein 266	protein-coding
90698	chr17	1752551	1752850	+	0	NA	exon (NM_000934, exon 9 of 10)	exon (NM_000934, exon 9 of 10)	-9225	NM_001329904	5176		NM_002615	ENSG00000132386	SERPINF1	EPC-1|OI12|OI6|PEDF|PIG35	serpin family F member 1	protein-coding
177090	chr4	108066201	108066800	+	0	NA	intron (NM_016269, intron 9 of 11)	intron (NM_016269, intron 9 of 11)	61836	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
60819	chr13	45362921	45363380	+	0	NA	intron (NR_024458, intron 3 of 10)	intron (NR_024458, intron 3 of 10)	21805	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
79716	chr16	1315971	1316280	+	0	NA	intron (NM_194259, intron 5 of 7)	intron (NM_194259, intron 5 of 7)	6489	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
150655	chr21	43420101	43421630	+	0	NA	intron (NM_173354, intron 7 of 13)	intron (NM_173354, intron 7 of 13)	6266	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
136965	chr2	190412921	190413200	+	0	NA	intron (NM_001375986, intron 1 of 7)	intron (NM_001375986, intron 1 of 7)	4202	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
121430	chr19	47024801	47025200	+	0	NA	intron (NM_002517, intron 3 of 11)	AluSq|SINE|Alu	5163	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
195087	chr6	35583771	35584380	+	0	NA	3' UTR (NM_001145777, exon 7 of 7)	3' UTR (NM_001145777, exon 7 of 7)	-71179	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
137270	chr2	195168551	195168650	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	438005	NR_110223	101927431		NR_110223	ENSG00000230173	LINC01790	-	long intergenic non-protein coding RNA 1790	ncRNA
184952	chr5	113058621	113059080	+	0	NA	intron (NM_001085377, intron 14 of 18)	intron (NM_001085377, intron 14 of 18)	82052	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
145749	chr20	45099571	45100000	+	0	NA	intron (NM_001322799, intron 1 of 3)	intron (NM_001322799, intron 1 of 3)	1342	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
188012	chr5	149548101	149548700	+	0	NA	intron (NM_001892, intron 2 of 9)	AluSx|SINE|Alu	1965	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
84177	chr16	29818351	29818650	+	0	NA	intron (NM_024516, intron 2 of 2)	L2b|LINE|L2	-1894	NM_017458	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
134127	chr2	134143671	134143830	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	16625	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
204129	chr7	2347251	2347350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6786	NM_001362792	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
226285	chr9	68320121	68320600	+	0	NA	Intergenic	SATR1|Satellite|Satellite	17493	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
17215	chr1	156269901	156270100	+	0	NA	intron (NM_001323616, intron 8 of 22)	AluSx3|SINE|Alu	12825	NM_015327	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
233091	chr9	137107821	137108350	+	0	NA	intron (NM_016219, intron 12 of 12)	intron (NM_016219, intron 12 of 12)	6648	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
163358	chr3	50449601	50451480	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	53094	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
32150	chr10	101310351	101311280	+	0	NA	Intergenic	Intergenic	-43218	NM_001256856	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
2596	chr1	9881821	9883130	+	0	NA	intron (NM_001012329, intron 1 of 4)	intron (NM_001012329, intron 1 of 4)	27794	NM_020248	56998		NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
21355	chr1	204806971	204807900	+	0	NA	Intergenic	Intergenic	-21217	NM_001378329	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
184602	chr5	103224371	103224950	+	0	NA	Intergenic	Intergenic	-33714	NM_001377283	90355		NM_033211	ENSG00000181751	MACIR	C5orf30	macrophage immunometabolism regulator	protein-coding
142312	chr20	3658921	3659450	+	0	NA	TTS (NM_145762)	TTS (NM_145762)	4214	NM_022139	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
136851	chr2	186484551	186484850	+	0	NA	Intergenic	Intergenic	-1560	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
8240	chr1	39738621	39739650	+	0	NA	intron (NM_203456, intron 1 of 9)	intron (NM_203456, intron 1 of 9)	253	NM_006112	10450		NM_006112	ENSG00000084072	PPIE	CYP-33|CYP33|CypE	peptidylprolyl isomerase E	protein-coding
57648	chr12	122522751	122523650	+	0	NA	intron (NR_036436, intron 1 of 9)	intron (NR_036436, intron 1 of 9)	3736	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
181082	chr5	36872171	36872580	+	0	NA	non-coding (NR_046262, exon 1 of 1)	non-coding (NR_046262, exon 1 of 1)	4319	NR_046262	646719		NR_046262	ENSG00000285967	NIPBL-DT	NIPBL-AS|NIPBL-AS1	NIPBL divergent transcript	ncRNA
46624	chr11	128624291	128625830	+	0	NA	Intergenic	Intergenic	-37502	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
115154	chr19	14405301	14407210	+	0	NA	intron (NM_001025160, intron 13 of 18)	CpG	13086	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
125101	chr2	9738351	9738780	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-104877	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
165010	chr3	71385301	71385700	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-80729	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
26587	chr10	22029371	22029800	+	0	NA	Intergenic	Intergenic	-25855	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
42945	chr11	73577501	73577700	+	0	NA	intron (NM_015159, intron 1 of 7)	MIRc|SINE|MIR	20512	NM_001286050	23201		NM_015159	ENSG00000054965	FAM168A	KIAA0280|TCRP1	family with sequence similarity 168 member A	protein-coding
23803	chr1	234326151	234326950	+	0	NA	Intergenic	Intergenic	20083	NR_039818	100616380		NR_039818	ENSG00000264377	MIR4671	-	microRNA 4671	ncRNA
24019	chr1	235265121	235265830	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJb|SINE|Alu	-61741	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
223158	chr8	143534351	143534900	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	6822	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
50562	chr12	48156921	48158180	+	0	NA	promoter-TSS (NM_024095)	promoter-TSS (NM_024095)	-35	NM_001319296	140461		NM_024095	ENSG00000177981	ASB8	PP14212	ankyrin repeat and SOCS box containing 8	protein-coding
208462	chr7	66985321	66986300	+	0	NA	Intergenic	AluSc|SINE|Alu	9776	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
222461	chr8	139703721	139704580	+	0	NA	Intergenic	CpG-27595	-1027	NM_001282534	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
97241	chr17	42964021	42965050	+	0	NA	promoter-TSS (NM_001261434)	promoter-TSS (NM_001261434)	-81	NM_001261434	80755		NM_001261434	ENSG00000266967	AARSD1	AlaXp	alanyl-tRNA synthetase domain containing 1	protein-coding
204994	chr7	6439401	6440450	+	0	NA	intron (NM_139179, intron 2 of 14)	AluSx1|SINE|Alu	8029	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
53155	chr12	57931701	57931900	+	0	NA	intron (NR_038269, intron 2 of 2)	MLT1K|LTR|ERVL-MaLR	4364	NR_038269	100506844		NR_038269	ENSG00000257698	GIHCG	-	GIHCG inhibitor of miR-200b/200a/429 expression	ncRNA
37342	chr11	14889401	14889600	+	0	NA	intron (NM_024514, intron 1 of 4)	intron (NM_024514, intron 1 of 4)	2171	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
21406	chr1	205293401	205293600	+	0	NA	Intergenic	Intergenic	28245	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
63903	chr14	21894871	21895200	+	0	NA	Intergenic	Intergenic	-224018	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
101873	chr17	74278271	74278630	+	0	NA	intron (NM_001172810, intron 1 of 13)	intron (NM_001172810, intron 1 of 13)	4216	NM_023036	64446		NM_023036	ENSG00000171595	DNAI2	CILD9|DIC2|oda6	dynein axonemal intermediate chain 2	protein-coding
35062	chr11	601751	602400	+	0	NA	intron (NM_001286582, intron 10 of 17)	intron (NM_001286582, intron 10 of 17)	13875	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
148554	chr20	64235651	64235950	+	0	NA	intron (NM_004535, intron 19 of 22)	intron (NM_004535, intron 19 of 22)	-19895	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
222790	chr8	142143001	142143400	+	0	NA	Intergenic	Intergenic	-33139	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
134292	chr2	135913721	135914000	+	0	NA	intron (NM_001293312, intron 11 of 14)	intron (NM_001293312, intron 11 of 14)	-37417	NM_005915	4175		NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
238874	chrX	154534301	154535530	+	0	NA	intron (NM_000402, intron 5 of 12)	intron (NM_000402, intron 5 of 12)	-6323	NM_001377312	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
178436	chr4	147833521	147833980	+	0	NA	intron (NM_024605, intron 3 of 22)	Kanga1|DNA|TcMar-Tc2	51155	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
46977	chr12	10071	10730	+	0	NA	Intergenic	(CTAACC)n|Simple_repeat|Simple_repeat	21615	NR_130745	100288778		NR_130745	ENSG00000226210	WASH8P	-	WAS protein family homolog 8, pseudogene	pseudo
10994	chr1	84505541	84506950	+	0	NA	promoter-TSS (NM_001310156)	promoter-TSS (NM_001310156)	-141	NM_001310156	100505741		NM_022354	ENSG00000122432	SPATA1	SP-2|SPAP1	spermatogenesis associated 1	protein-coding
43113	chr11	75144301	75144780	+	0	NA	Intergenic	Intergenic	-6567	NM_001145212	11309		NM_007256	ENSG00000137491	SLCO2B1	OATP-B|OATP2B1|OATPB|SLC21A9	solute carrier organic anion transporter family member 2B1	protein-coding
56706	chr12	120092501	120093030	+	0	NA	intron (NR_147893, intron 10 of 10)	intron (NR_147893, intron 10 of 10)	23988	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
163671	chr3	52228921	52229180	+	0	NA	exon (NM_007284, exon 9 of 9)	exon (NM_007284, exon 9 of 9)	-2887	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
109848	chr19	1212821	1213080	+	0	NA	intron (NM_000455, intron 1 of 9)	AluJr|SINE|Alu	7172	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
174072	chr4	26974671	26975030	+	0	NA	intron (NM_020860, intron 3 of 11)	L1PA6|LINE|L1	114009	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
6586	chr1	28760151	28760450	+	0	NA	intron (NM_016258, intron 4 of 4)	(TG)n|Simple_repeat|Simple_repeat	23360	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
166781	chr3	122488751	122489050	+	0	NA	intron (NM_002264, intron 2 of 13)	L1MEc|LINE|L1	26039	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
228484	chr9	100010871	100011380	+	0	NA	intron (NM_015051, intron 8 of 11)	intron (NM_015051, intron 8 of 11)	87875	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
183186	chr5	75668901	75669500	+	0	NA	intron (NM_001276713, intron 12 of 13)	intron (NM_001276713, intron 12 of 13)	43255	NM_152408	134359		NM_152408	ENSG00000152359	POC5	C5orf37	POC5 centriolar protein	protein-coding
20919	chr1	202188851	202189500	+	0	NA	intron (NR_002930, intron 21 of 21)	intron (NR_002930, intron 21 of 21)	-4815	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
208575	chr7	72839671	72839830	+	0	NA	Intergenic	AluSx|SINE|Alu	10377	NR_024110	155370		NR_001588	ENSG00000291152	SBDSP1	SBDSP	SBDS pseudogene 1	pseudo
165237	chr3	73018321	73018680	+	0	NA	intron (NM_001318025, intron 2 of 7)	AluJb|SINE|Alu	21689	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
195314	chr6	36598371	36599030	+	0	NA	intron (NM_003017, intron 2 of 5)	intron (NM_003017, intron 2 of 5)	4338	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
152909	chr22	22758171	22758900	+	0	NA	Intergenic	Intergenic	-64241	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
22604	chr1	223278251	223278550	+	0	NA	intron (NM_001037175, intron 3 of 5)	L1PA5|LINE|L1	85776	NM_001037175	55061		NM_017982	ENSG00000143502	SUSD4	PRO222	sushi domain containing 4	protein-coding
107456	chr18	46596121	46596380	+	0	NA	intron (NM_144612, intron 8 of 39)	L1ME3E|LINE|L1	-36938	NM_001145472	125336		NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology PLAT domains 1	protein-coding
126315	chr2	27305701	27305900	+	0	NA	exon (NM_032546, exon 6 of 10)	exon (NM_032546, exon 6 of 10)	2645	NM_003353	7349		NM_003353	ENSG00000163794	UCN	UCN1|UI|UROC	urocortin	protein-coding
37708	chr11	30316951	30317330	+	0	NA	Intergenic	Intergenic	-5964	NM_152316	120534		NM_152316	ENSG00000152219	ARL14EP	ARF7EP|C11orf46|dJ299F11.1	ADP ribosylation factor like GTPase 14 effector protein	protein-coding
58057	chr12	124496271	124496800	+	0	NA	intron (NM_001077261, intron 2 of 47)	intron (NM_001077261, intron 2 of 47)	71077	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
91402	chr17	4642201	4642400	+	0	NA	promoter-TSS (NM_001140)	promoter-TSS (NM_001140)	-622	NM_001140	246		NM_001140	ENSG00000161905	ALOX15	12-LOX|15-LOX|15-LOX-1|LOG15	arachidonate 15-lipoxygenase	protein-coding
50291	chr12	46380871	46381030	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-2726	NR_125380	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
196561	chr6	44100071	44100380	+	0	NA	Intergenic	Intergenic	-25573	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
178897	chr4	158113451	158113550	+	0	NA	Intergenic	Intergenic	-57252	NR_147408	285505		NR_147407	ENSG00000248429	GASK1B-AS1	FAM198B-AS1	GASK1B antisense RNA 1	ncRNA
199493	chr6	118656651	118657500	+	0	NA	intron (NM_001178035, intron 1 of 13)	ERV3-16A3_LTR|LTR|ERVL	-5484	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
152659	chr22	21573351	21573880	+	0	NA	intron (NR_046082, intron 1 of 3)	intron (NR_046082, intron 1 of 3)	5901	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
116182	chr19	17447771	17448880	+	0	NA	exon (NM_001190844, exon 1 of 3)	exon (NM_001190844, exon 1 of 3)	343	NM_001190844	100130519		NM_001190844	ENSG00000188051	TMEM221	Jiraiya	transmembrane protein 221	protein-coding
175563	chr4	75638251	75638350	+	0	NA	Intergenic	AluSp|SINE|Alu	-7772	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
137543	chr2	197223321	197223780	+	0	NA	intron (NM_153697, intron 1 of 9)	L1ME3Cz|LINE|L1	25559	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
221414	chr8	123539871	123540530	+	0	NA	intron (NM_001242463, intron 1 of 6)	intron (NM_001242463, intron 1 of 6)	1006	NM_058229	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
82483	chr16	17342871	17345080	+	0	NA	intron (NM_022166, intron 2 of 11)	intron (NM_022166, intron 2 of 11)	126985	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
104144	chr17	80385051	80385880	+	0	NA	intron (NM_001256071, intron 60 of 67)	intron (NM_001256071, intron 60 of 67)	-29702	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
140848	chr2	237155121	237155600	+	0	NA	Intergenic	Intergenic	69471	NM_006710	10920		NM_006710	ENSG00000198612	COPS8	COP9|CSN8|SGN8	COP9 signalosome subunit 8	protein-coding
14094	chr1	120896721	120896980	+	0	NA	Intergenic	L1MC4a|LINE|L1	7104	NM_001143883	653505		NM_001143883	ENSG00000263353	PPIAL4A	COAS-2|COAS2|PPIAL4|PPIAL4B	peptidylprolyl isomerase A like 4A	protein-coding
185826	chr5	132455321	132455580	+	0	NA	intron (NR_161242, intron 3 of 3)	Tigger15a|DNA|TcMar-Tigger	35323	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
86270	chr16	58503251	58503750	+	0	NA	intron (NM_001242833, intron 2 of 14)	intron (NM_001242833, intron 2 of 14)	3357	NM_001378344	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
2388	chr1	9430051	9430150	+	0	NA	Intergenic	L2a|LINE|L2	-1104	NR_104622	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
139150	chr2	219104101	219104450	+	0	NA	intron (NR_165304, intron 5 of 8)	intron (NR_165304, intron 5 of 8)	-43354	NM_002181	3549		NM_002181	ENSG00000163501	IHH	BDA1|HHG2	Indian hedgehog signaling molecule	protein-coding
193448	chr6	30491091	30494300	+	0	NA	intron (NM_005516, intron 7 of 7)	intron (NM_005516, intron 7 of 7)	3186	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
39403	chr11	60830921	60831400	+	0	NA	Intergenic	Intergenic	-10953	NM_024098	79080		NM_024098	ENSG00000110104	CCDC86	Cgr1	coiled-coil domain containing 86	protein-coding
97958	chr17	45237221	45237680	+	0	NA	intron (NM_005892, intron 8 of 26)	intron (NM_005892, intron 8 of 26)	-10475	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
230625	chr9	128635021	128636200	+	0	NA	intron (NM_052844, intron 5 of 8)	intron (NM_052844, intron 5 of 8)	21240	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
178391	chr4	147097001	147097230	+	0	NA	Intergenic	Intergenic	-151229	NM_031956	83894		NM_031956	ENSG00000137473	TTC29	NYD-SP14|SPGF42|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
176889	chr4	102786201	102786750	+	0	NA	intron (NR_125932, intron 4 of 4)	intron (NR_125932, intron 4 of 4)	9438	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
129953	chr2	73928521	73929380	+	0	NA	intron (NR_134895, intron 1 of 2)	L2a|LINE|L2	2070	NM_080918	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
6167	chr1	27418101	27418900	+	0	NA	intron (NM_006990, intron 3 of 8)	intron (NM_006990, intron 3 of 8)	25878	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
164290	chr3	57593901	57594850	+	0	NA	intron (NM_001660, intron 1 of 5)	FLAM_C|SINE|Alu	2969	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
14968	chr1	147950251	147950350	+	0	NA	intron (NM_016334, intron 5 of 13)	SVA_D|Retroposon|SVA	21880	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
180732	chr5	31809101	31809300	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	126959	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
118047	chr19	34256971	34257480	+	0	NA	intron (NM_014686, intron 1 of 13)	intron (NM_014686, intron 1 of 13)	2671	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
143085	chr20	21916271	21916450	+	0	NA	Intergenic	L1PA2|LINE|L1	-137730	NR_038394	100270679		NR_038394	ENSG00000234435	LINC01432	-	long intergenic non-protein coding RNA 1432	ncRNA
86750	chr16	67650371	67650730	+	0	NA	intron (NM_001317026, intron 23 of 37)	intron (NM_001317026, intron 23 of 37)	5406	NM_001013838	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
162138	chr3	46953321	46954450	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	22616	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
17333	chr1	156476901	156477330	+	0	NA	exon (NM_005920, exon 7 of 12)	exon (NM_005920, exon 7 of 12)	13572	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
65438	chr14	51299051	51299150	+	0	NA	Intergenic	Intergenic	29285	NR_145423	161342		NR_145423	ENSG00000258955	LINC00519	C14orf30|c14_5317	long intergenic non-protein coding RNA 519	ncRNA
174168	chr4	36280371	36280730	+	0	NA	Intergenic	Intergenic	-1066	NM_001136536	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
23071	chr1	226640251	226640950	+	0	NA	intron (NM_002221, intron 5 of 7)	intron (NM_002221, intron 5 of 7)	34468	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
132743	chr2	109546051	109546350	+	0	NA	exon (NM_001321508, exon 6 of 6)	exon (NM_001321508, exon 6 of 6)	67467	NM_001321515	151011		NM_144710	ENSG00000186522	SEPTIN10	SEPT10|Septin-10	septin 10	protein-coding
129603	chr2	70095071	70095880	+	0	NA	Intergenic	Intergenic	7998	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
92613	chr17	10042321	10042580	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-5793	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
182862	chr5	69709601	69711240	+	0	NA	non-coding (NR_027386, exon 1 of 6)	non-coding (NR_027386, exon 1 of 6)	107	NR_027386	653188		NR_027386	ENSG00000290560	GUSBP3	GUSBP1|SMA3	GUSB pseudogene 3	pseudo
145776	chr20	45365721	45366180	+	0	NA	intron (NR_003189, intron 3 of 5)	MIR3|SINE|MIR	2781	NR_003189	767557		NR_003189	ENSG00000254806	SYS1-DBNDD2	C20orf169-DBNDD2	SYS1-DBNDD2 readthrough (NMD candidate)	ncRNA
33383	chr10	117543271	117544100	+	0	NA	intron (NM_001165924, intron 1 of 1)	CpG	939	NM_004098	2018		NM_004098	ENSG00000170370	EMX2	-	empty spiracles homeobox 2	protein-coding
161691	chr3	43470601	43470830	+	0	NA	intron (NM_001346467, intron 12 of 13)	AluJb|SINE|Alu	-118753	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
153205	chr22	23862101	23862330	+	0	NA	intron (NM_001282864, intron 2 of 10)	intron (NM_001282864, intron 2 of 10)	4340	NM_001024939	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
191469	chr6	11092871	11094850	+	0	NA	promoter-TSS (NM_001135575)	promoter-TSS (NM_001135575)	26	NM_001135575	221710		NM_001135575	ENSG00000224531	SMIM13	C6orf228	small integral membrane protein 13	protein-coding
169152	chr3	156512271	156512430	+	0	NA	intron (NM_172160, intron 8 of 13)	intron (NM_172160, intron 8 of 13)	41775	NM_001308205	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
41390	chr11	66007301	66007500	+	0	NA	Intergenic	Intergenic	-4608	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
184420	chr5	98925701	98926100	+	0	NA	intron (NR_157078, intron 2 of 36)	MER3|DNA|hAT-Charlie	-2662	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
10068	chr1	58769271	58769580	+	0	NA	Intergenic	Intergenic	14622	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
103893	chr17	79799271	79799630	+	0	NA	Intergenic	CpG-11773	-2373	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
4595	chr1	22080901	22081100	+	0	NA	intron (NM_044472, intron 2 of 5)	AluSg|SINE|Alu	28291	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
11766	chr1	92410501	92411430	+	0	NA	Intergenic	Intergenic	72989	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
54605	chr12	92551651	92552150	+	0	NA	Intergenic	Intergenic	85221	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
225369	chr9	34983171	34983580	+	0	NA	TTS (NR_136307)	TTS (NR_136307)	6004	NR_109756	101926900		NR_109756	ENSG00000281491	DNAJB5-DT	DNAJB5-AS1	DNAJB5 divergent transcript	ncRNA
211329	chr7	104751771	104751950	+	0	NA	intron (NM_199000, intron 2 of 2)	HERVK-int|LTR|ERVK	52232	NR_034141	645591		NR_034141	ENSG00000226869	LHFPL3-AS1	-	LHFPL3 antisense RNA 1	ncRNA
206053	chr7	27154751	27155380	+	0	NA	non-coding (NR_038832, exon 3 of 3)	non-coding (NR_038832, exon 3 of 3)	1610	NM_006896	3204		NM_006896	ENSG00000122592	HOXA7	ANTP|HOX1|HOX1.1|HOX1A	homeobox A7	protein-coding
41365	chr11	65974421	65975400	+	0	NA	intron (NM_005146, intron 12 of 19)	AluY|SINE|Alu	13176	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
119751	chr19	41281471	41281830	+	0	NA	intron (NM_144732, intron 7 of 14)	intron (NM_144732, intron 7 of 14)	16569	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
60443	chr13	41007121	41008030	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	11741	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
129704	chr2	70767001	70767600	+	0	NA	intron (NM_001617, intron 1 of 15)	intron (NM_001617, intron 1 of 15)	415	NM_001185054	119		NM_001617	ENSG00000075340	ADD2	ADDB	adducin 2	protein-coding
132644	chr2	108724851	108725380	+	0	NA	intron (NM_006267, intron 1 of 28)	intron (NM_006267, intron 1 of 28)	5633	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
138826	chr2	216370151	216370450	+	0	NA	5' UTR (NM_020814, exon 1 of 4)	5' UTR (NM_020814, exon 1 of 4)	2183	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
2858	chr1	11283521	11283980	+	0	NA	intron (NM_001330350, intron 1 of 1)	intron (NM_001330350, intron 1 of 1)	10552	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
147425	chr20	58896551	58897250	+	0	NA	intron (NM_001077489, intron 2 of 11)	A-rich|Low_complexity|Low_complexity	4737	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
227590	chr9	92455251	92455350	+	0	NA	TTS (NM_001193335)	TTS (NM_001193335)	27206	NM_017680	54829		NM_017680	ENSG00000106819	ASPN	OS3|PLAP-1|PLAP1|SLRR1C	asporin	protein-coding
59208	chr13	23060771	23061130	+	0	NA	Intergenic	L1M5|LINE|L1	-99558	NM_001378244	6445		NM_000231	ENSG00000102683	SGCG	35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG	sarcoglycan gamma	protein-coding
179864	chr5	552721	552980	+	0	NA	Intergenic	Intergenic	-16968	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
40836	chr11	65015571	65015880	+	0	NA	intron (NM_001199745, intron 1 of 3)	AluJo|SINE|Alu	1565	NM_001667	402		NM_001667	ENSG00000213465	ARL2	ARFL2|MRCS1	ADP ribosylation factor like GTPase 2	protein-coding
70537	chr14	102507271	102507780	+	0	NA	exon (NM_152326, exon 4 of 4)	exon (NM_152326, exon 4 of 4)	2251	NM_152326	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
218244	chr8	42143871	42144630	+	0	NA	Intergenic	LTR53B|LTR|ERVL	-8696	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
94664	chr17	30330221	30331030	+	0	NA	intron (NM_206832, intron 2 of 6)	intron (NM_206832, intron 2 of 6)	3432	NM_001319942	388364		NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
199215	chr6	111801851	111802550	+	0	NA	intron (NM_002037, intron 2 of 13)	MSTA|LTR|ERVL-MaLR	-42283	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
219032	chr8	65643001	65643230	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-1538	NM_001145839	9650		NM_014637	ENSG00000066855	MTFR1	CHPPR|FAM54A2	mitochondrial fission regulator 1	protein-coding
3948	chr1	18631201	18631800	+	0	NA	5' UTR (NM_002584, exon 1 of 8)	5' UTR (NM_002584, exon 1 of 8)	654	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
57426	chr12	121885671	121886030	+	0	NA	intron (NM_001171993, intron 1 of 15)	AluSx|SINE|Alu	2761	NM_001171993	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
93814	chr17	20693051	20693150	+	0	NA	Intergenic	HAL1|LINE|L1	-19346	NR_073509	100287072		NR_073509		LOC100287072	-	ribosomal protein S6 kinase B1 pseudogene	pseudo
71954	chr15	23439621	23439880	+	0	NA	exon (NM_001304388, exon 8 of 8)	exon (NM_001304388, exon 8 of 8)	7493	NM_001304388	283685		NM_182561	ENSG00000174450	GOLGA6L2	CT105	golgin A6 family like 2	protein-coding
87066	chr16	68365801	68366230	+	0	NA	intron (NM_018667, intron 3 of 8)	intron (NM_018667, intron 3 of 8)	54901	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
49999	chr12	42239721	42239980	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1482	NM_001320080	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
99601	chr17	50539471	50539630	+	0	NA	promoter-TSS (NR_135675)	promoter-TSS (NR_135675)	-796	NR_135675	105371824		NR_135675	ENSG00000250286	LOC105371824	-	uncharacterized LOC105371824	ncRNA
167272	chr3	128619221	128619830	+	0	NA	TTS (NM_002950)	TTS (NM_002950)	31293	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
56223	chr12	111685001	111687000	+	0	NA	promoter-TSS (NM_006768)	promoter-TSS (NM_006768)	-44	NM_006768	8315		NM_006768	ENSG00000089234	BRAP	BRAP2|IMP|RNF52	BRCA1 associated protein	protein-coding
88182	chr16	81722721	81723650	+	0	NA	Intergenic	Intergenic	-56106	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
235919	chrX	53088061	53089930	+	0	NA	TTS (NM_022117)	TTS (NM_022117)	-5162	NR_145978	102723508		NM_001397448	ENSG00000232593	KANTR	LINC01155|Spasm	KANTR integral membrane protein	protein-coding
229352	chr9	120924701	120925500	+	0	NA	intron (NM_005658, intron 2 of 7)	intron (NM_005658, intron 2 of 7)	1696	NM_005658	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
17654	chr1	157403571	157403930	+	0	NA	Intergenic	Intergenic	148765	NM_031281	83416		NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
105917	chr18	3452201	3452880	+	0	NA	intron (NM_170695, intron 1 of 2)	intron (NM_170695, intron 1 of 2)	947	NM_173210	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
200121	chr6	130213801	130214230	+	0	NA	intron (NM_001258275, intron 6 of 13)	intron (NM_001258275, intron 6 of 13)	1870	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
72221	chr15	30190471	30190630	+	0	NA	Intergenic	Intergenic	-5486	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
98135	chr17	46002101	46002950	+	0	NA	intron (NR_165166, intron 7 of 9)	intron (NR_165166, intron 7 of 9)	3275	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
231071	chr9	129665001	129666380	+	0	NA	promoter-TSS (NM_016307)	promoter-TSS (NM_016307)	43	NM_016307	51450		NM_016307	ENSG00000167157	PRRX2	PMX2|PRX2	paired related homeobox 2	protein-coding
95522	chr17	36549451	36549550	+	0	NA	intron (NM_024835, intron 2 of 13)	AluSx|SINE|Alu	4581	NM_024835	79893		NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
211023	chr7	102408501	102408700	+	0	NA	intron (NR_038967, intron 8 of 8)	intron (NR_038967, intron 8 of 8)	-2745	NR_031669	100313829		NR_031669	ENSG00000221510	MIR548O	MIRN548O	microRNA 548o	ncRNA
206359	chr7	30481221	30481680	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-2584	NR_149002	10392		NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1|hNod1	nucleotide binding oligomerization domain containing 1	protein-coding
136357	chr2	176083251	176083550	+	0	NA	exon (NM_001080458, exon 1 of 3)	exon (NM_001080458, exon 1 of 3)	562	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
14324	chr1	143887571	143887980	+	0	NA	intron (NR_160914, intron 1 of 2)	LTR61|LTR|ERV1	13032	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
85346	chr16	50195321	50195780	+	0	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	42244	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
4897	chr1	23802071	23802330	+	0	NA	3' UTR (NM_000191, exon 9 of 9)	3' UTR (NM_000191, exon 9 of 9)	-1446	NM_001008216	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
165169	chr3	72346371	72346980	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	99948	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
224465	chr9	15532551	15532650	+	0	NA	Intergenic	LTR41|LTR|ERVL	-20443	NM_001348002	203238		NM_173550	ENSG00000164989	CCDC171	C9orf93|bA536D16.1|bA778P13.1	coiled-coil domain containing 171	protein-coding
84379	chr16	30281321	30281580	+	0	NA	Intergenic	Intergenic	-33037	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
225063	chr9	33243871	33244230	+	0	NA	intron (NM_014471, intron 1 of 3)	L3|LINE|CR1	3883	NM_014471	27290		NM_014471	ENSG00000122711	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor Kazal type 4	protein-coding
32411	chr10	102449001	102450000	+	0	NA	promoter-TSS (NR_038937)	promoter-TSS (NR_038937)	-317	NR_038938	100505761		NR_038937	ENSG00000269609	C10orf95-AS1	RPARP-AS1	C10orf95 antisense RNA 1	ncRNA
5605	chr1	26045871	26046830	+	0	NA	promoter-TSS (NM_001004434)	promoter-TSS (NM_001004434)	-232	NM_032513	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
3330	chr1	15424101	15425450	+	0	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	-13668	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
102627	chr17	76003751	76004250	+	0	NA	intron (NM_001258, intron 7 of 7)	AluSq2|SINE|Alu	3094	NM_001258	1018		NM_001258	ENSG00000250506	CDK3	-	cyclin dependent kinase 3	protein-coding
232629	chr9	136451421	136451880	+	0	NA	intron (NM_014866, intron 22 of 31)	intron (NM_014866, intron 22 of 31)	-11805	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
111344	chr19	3654171	3654330	+	0	NA	intron (NM_001300849, intron 6 of 16)	intron (NM_001300849, intron 6 of 16)	-27435	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
135012	chr2	154375671	154375830	+	0	NA	intron (NM_001376405, intron 8 of 10)	intron (NM_001376405, intron 8 of 10)	81688	NR_161181	100144595		NR_161181	ENSG00000224675	GALNT13-AS1	-	GALNT13 antisense RNA 1	ncRNA
119939	chr19	41865221	41865650	+	0	NA	intron (NM_001321485, intron 3 of 5)	MIRb|SINE|MIR	-4192	NR_106855	102465478		NR_106855	ENSG00000276926	MIR6797	hsa-mir-6797	microRNA 6797	ncRNA
159626	chr3	15289601	15290000	+	0	NA	intron (NM_004844, intron 3 of 8)	intron (NM_004844, intron 3 of 8)	35616	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
118229	chr19	35204451	35204550	+	0	NA	Intergenic	Intergenic	24225	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
187659	chr5	143182821	143183630	+	0	NA	intron (NM_001349547, intron 20 of 21)	intron (NM_001349547, intron 20 of 21)	-9275	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
76218	chr15	73923201	73923400	+	0	NA	intron (NR_040068, intron 1 of 2)	intron (NR_040068, intron 1 of 2)	-3162	NM_005576	4016		NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase like 1	protein-coding
189457	chr5	173010671	173010850	+	0	NA	intron (NM_003945, intron 2 of 3)	intron (NM_003945, intron 2 of 3)	-9966	NR_002988	677841		NR_002988	ENSG00000212402	SNORA74B	U19-2	small nucleolar RNA, H/ACA box 74B	snoRNA
212058	chr7	114981521	114981980	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	59596	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
174196	chr4	36551701	36552130	+	0	NA	intron (NR_149124, intron 3 of 4)	intron (NR_149124, intron 3 of 4)	89985	NR_149124	105374400		NR_149124		LINC02505	-	long intergenic non-protein coding RNA 2505	ncRNA
117840	chr19	31350631	31351130	+	0	NA	Intergenic	CpG-14211	-1444	NR_138035	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
224572	chr9	19934451	19934750	+	0	NA	Intergenic	CpG	-145563	NM_001193288	25769		NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
216445	chr8	19496451	19498550	+	0	NA	intron (NR_148900, intron 3 of 9)	L1MCc|LINE|L1	105045	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
117375	chr19	19579701	19580100	+	0	NA	intron (NM_025245, intron 2 of 7)	intron (NM_025245, intron 2 of 7)	38787	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
155478	chr22	38497001	38497580	+	0	NA	intron (NM_006386, intron 5 of 12)	AluSq|SINE|Alu	9021	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
28503	chr10	50224351	50224650	+	0	NA	intron (NM_019893, intron 7 of 20)	intron (NM_019893, intron 7 of 20)	27016	NM_019893	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
150532	chr21	42976771	42977130	+	0	NA	intron (NM_001320694, intron 1 of 10)	Tigger1|DNA|TcMar-Tigger	2388	NM_004571	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
222338	chr8	133530551	133530980	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	41122	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
36428	chr11	4522451	4522550	+	0	NA	Intergenic	L1MA2|LINE|L1	-22691	NM_001004137	119772		NM_001004137	ENSG00000197790	OR52M1	OR11-11|OR52M1P|OR52M3P	olfactory receptor family 52 subfamily M member 1	protein-coding
25526	chr10	7329301	7329500	+	0	NA	intron (NM_001029880, intron 4 of 20)	intron (NM_001029880, intron 4 of 20)	79941	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
187909	chr5	148841571	148841930	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	15139	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
34745	chr10	133784051	133784430	+	0	NA	Intergenic	MER34C_|LTR|ERV1	-157445	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
93037	chr17	17301971	17302130	+	0	NA	Intergenic	AluSq|SINE|Alu	-1323	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
215983	chr8	8856801	8857000	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	36730	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
238029	chrX	135112251	135112850	+	0	NA	Intergenic	L1PA16|LINE|L1	7976	NM_001355519	100129515		NM_001355519	ENSG00000224107	ETDB	ETDA|LINC00633	embryonic testis differentiation homolog B	protein-coding
108027	chr18	58895671	58895830	+	0	NA	intron (NM_001375912, intron 2 of 9)	intron (NM_001375912, intron 2 of 9)	30873	NM_001353538	55205		NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
509	chr1	1201001	1203080	+	0	NA	Intergenic	Intergenic	4552	NM_148902	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
116354	chr19	17867701	17867900	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4145	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
218908	chr8	60751521	60751780	+	0	NA	intron (NM_001316690, intron 1 of 4)	intron (NM_001316690, intron 1 of 4)	10391	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
126301	chr2	27254751	27255130	+	0	NA	3' UTR (NM_001318951, exon 8 of 8)	3' UTR (NM_001318951, exon 8 of 8)	8107	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
21880	chr1	207775871	207776030	+	0	NA	intron (NM_172352, intron 7 of 11)	L1PA6|LINE|L1	23896	NM_172355	4179		NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding
215212	chr7	155996321	155996580	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	33893	NR_168379	389602		NM_001291913	ENSG00000204876	LOC389602	-	uncharacterized LOC389602	ncRNA
195035	chr6	35480821	35481080	+	0	NA	intron (NM_003214, intron 3 of 12)	intron (NM_003214, intron 3 of 12)	10442	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
194433	chr6	33118451	33118950	+	0	NA	intron (NR_001435, intron 2 of 4)	intron (NR_001435, intron 2 of 4)	6184	NR_001435	3116		NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo
126034	chr2	25360801	25361150	+	0	NA	Intergenic	Intergenic	-18385	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
82989	chr16	22009221	22009480	+	0	NA	intron (NM_001164579, intron 1 of 2)	intron (NM_001164579, intron 1 of 2)	1239	NM_001164579	730094		NM_173501	ENSG00000185716	MOSMO	ATTHOG|BC030336|C16orf52	modulator of smoothened	protein-coding
182966	chr5	71453071	71453230	+	0	NA	Intergenic	Intergenic	-2501	NM_018429	55814		NM_018429	ENSG00000145734	BDP1	DFNB112|HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
114670	chr19	13079271	13079630	+	0	NA	intron (NM_001271043, intron 7 of 10)	intron (NM_001271043, intron 7 of 10)	23408	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
851	chr1	1607051	1607650	+	0	NA	TTS (NR_147951)	TTS (NR_147951)	-7215	NM_001242659	643988		NM_001242659	ENSG00000228594	FNDC10	C1orf233	fibronectin type III domain containing 10	protein-coding
218658	chr8	57575201	57575550	+	0	NA	Intergenic	Intergenic	-170774	NR_134276	286178		NR_134276	ENSG00000254139	LINC03018	-	long intergenic non-protein coding RNA 3018	ncRNA
211455	chr7	105087101	105087300	+	0	NA	intron (NM_182931, intron 13 of 26)	(TA)n|Simple_repeat|Simple_repeat	72995	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
214176	chr7	144835201	144836780	+	0	NA	promoter-TSS (NM_001350885)	promoter-TSS (NM_001350885)	-50	NM_001350879	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
95425	chr17	36104521	36104850	+	0	NA	3' UTR (NM_001291470, exon 2 of 2)	3' UTR (NM_001291470, exon 2 of 2)	858	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
69389	chr14	94039751	94040180	+	0	NA	intron (NM_023112, intron 3 of 5)	MER20|DNA|hAT-Charlie	13625	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
49075	chr12	14424401	14424600	+	0	NA	exon (NM_001286514, exon 2 of 15)	exon (NM_001286514, exon 2 of 15)	39219	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
128772	chr2	62214351	62214750	+	0	NA	promoter-TSS (NM_001319075)	promoter-TSS (NM_001319075)	-971	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
147359	chr20	58387521	58387780	+	0	NA	Intergenic	L1MEd|LINE|L1	-1579	NM_004738	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
102771	chr17	76290601	76290800	+	0	NA	intron (NR_130649, intron 4 of 18)	intron (NR_130649, intron 4 of 18)	16980	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
82238	chr16	15048721	15048980	+	0	NA	intron (NM_173474, intron 1 of 9).2	AluJr|SINE|Alu	7224	NM_173474	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
20413	chr1	198192721	198193180	+	0	NA	intron (NM_133494, intron 1 of 9)	L1P3|LINE|L1	35952	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
99759	chr17	50977901	50978100	+	0	NA	intron (NM_001130527, intron 26 of 29)	intron (NM_001130527, intron 26 of 29)	68878	NM_001251971	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
7745	chr1	36155151	36156500	+	0	NA	promoter-TSS (NM_018067)	promoter-TSS (NM_018067)	228	NM_001270895	27095		NM_014408	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex subunit 3	protein-coding
203368	chr6	170438421	170438750	+	0	NA	Intergenic	Intergenic	107824	NR_039787	100616430		NR_039787	ENSG00000266245	MIR4644	-	microRNA 4644	ncRNA
95373	chr17	35875451	35876380	+	0	NA	intron (NM_001278736, intron 2 of 3)	L2b|LINE|L2	4445	NM_001278736	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
132258	chr2	102662801	102663000	+	0	NA	intron (NM_003048, intron 2 of 11)	intron (NM_003048, intron 2 of 11)	43347	NM_003048	6549		NM_003048	ENSG00000115616	SLC9A2	NHE2	solute carrier family 9 member A2	protein-coding
93944	chr17	21321101	21321300	+	0	NA	Intergenic	Intergenic	33164	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
6870	chr1	31182371	31182900	+	0	NA	intron (NM_024522, intron 4 of 6)	intron (NM_024522, intron 4 of 6)	57252	NM_024522	79570		NM_024522	ENSG00000084628	NKAIN1	FAM77C	sodium/potassium transporting ATPase interacting 1	protein-coding
94165	chr17	28373721	28374150	+	0	NA	intron (NM_015077, intron 1 of 8)	intron (NM_015077, intron 1 of 8)	2241	NM_015077	23098		NM_015077	ENSG00000004139	SARM1	HsTIR|MyD88-5|SAMD2|SARM|hSARM1	sterile alpha and TIR motif containing 1	protein-coding
48680	chr12	10561271	10561700	+	0	NA	intron (NR_146456, intron 1 of 2)	AluJr|SINE|Alu	8106	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
72420	chr15	31447901	31448100	+	0	NA	Intergenic	L1PA5|LINE|L1	121165	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
540	chr1	1236971	1237450	+	0	NA	Intergenic	Intergenic	4973	NM_080605	126792		NM_080605	ENSG00000176022	B3GALT6	ALGAZ|EDSP2|EDSSPD2|SEMDJL1|beta3GalT6	beta-1,3-galactosyltransferase 6	protein-coding
190068	chr5	177610971	177611530	+	0	NA	TTS (NM_007255)	TTS (NM_007255)	11118	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
32210	chr10	101782971	101785450	+	0	NA	promoter-TSS (NM_006993)	promoter-TSS (NM_006993)	-797	NM_006993	10360		NM_006993	ENSG00000107833	NPM3	PORMIN|TMEM123	nucleophosmin/nucleoplasmin 3	protein-coding
138922	chr2	218215271	218215750	+	0	NA	Intergenic	AluJb|SINE|Alu	-1679	NM_152862	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
17155	chr1	156200671	156201230	+	0	NA	intron (NM_001377390, intron 3 of 3)	AluSx4|SINE|Alu	6846	NM_001286184	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
188157	chr5	150435801	150436650	+	0	NA	Intergenic	Intergenic	13514	NM_005617	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
139232	chr2	219301001	219301200	+	0	NA	intron (NM_001199763, intron 7 of 21)	intron (NM_001199763, intron 7 of 21)	-6900	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
80395	chr16	2560451	2561080	+	0	NA	intron (NM_031268, intron 2 of 10)	intron (NM_031268, intron 2 of 10)	22744	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
208224	chr7	65307721	65308000	+	0	NA	Intergenic	PABL_B-int|LTR|ERV1	-65939	NM_001287532	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
37013	chr11	12046571	12046730	+	0	NA	intron (NR_135109, intron 1 of 1)	L2b|LINE|L2	15775	NR_135109	105376554		NR_135109	ENSG00000254486	LINC02547	-	long intergenic non-protein coding RNA 2547	ncRNA
94190	chr17	28569151	28569480	+	0	NA	intron (NM_033198, intron 3 of 11)	AluJb|SINE|Alu	2209	NM_033198	94005		NM_033198	ENSG00000087111	PIGS	DEE95|GPIBD18|PIG-S	phosphatidylinositol glycan anchor biosynthesis class S	protein-coding
28921	chr10	63175221	63176080	+	0	NA	intron (NM_001322258, intron 23 of 24)	intron (NM_001322258, intron 23 of 24)	42322	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
63409	chr13	114080671	114080850	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-2805	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
131223	chr2	95161001	95161200	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-1252	NM_032788	84874		NM_032788	ENSG00000144026	ZNF514	-	zinc finger protein 514	protein-coding
209934	chr7	92586151	92586800	+	0	NA	intron (NM_001040057, intron 1 of 11)	Tigger19b|DNA|TcMar-Tigger	3574	NM_001288584	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
98634	chr17	47809001	47809480	+	0	NA	intron (NM_145798, intron 19 of 22)	intron (NM_145798, intron 19 of 22)	12554	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
201349	chr6	144585271	144585500	+	0	NA	intron (NM_001375323, intron 1 of 24)	intron (NM_001375323, intron 1 of 24)	2237	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
76026	chr15	72155801	72156300	+	0	NA	Intergenic	Intergenic	37647	NM_001172111	123228		NM_145204	ENSG00000166192	SENP8	DEN1|NEDP1|PRSC2	SUMO peptidase family member, NEDD8 specific	protein-coding
111271	chr19	3544171	3544330	+	0	NA	TTS (NM_001287529)	TTS (NM_001287529)	5093	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
131347	chr2	96161451	96162550	+	0	NA	Intergenic	L2a|LINE|L2	-16560	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
226237	chr9	66267211	66268400	+	0	NA	Intergenic	TAR1|Satellite|telo	-102899	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
16504	chr1	154870021	154870780	+	0	NA	promoter-TSS (NM_002249)	promoter-TSS (NM_002249)	-119	NM_002249	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
67427	chr14	70599471	70599630	+	0	NA	intron (NM_005466, intron 1 of 7)	L2|LINE|L2	1105	NM_005466	10001		NM_005466	ENSG00000133997	MED6	ARC33|NY-REN-28	mediator complex subunit 6	protein-coding
196636	chr6	44276871	44277280	+	0	NA	3' UTR (NM_001137560, exon 3 of 3)	3' UTR (NM_001137560, exon 3 of 3)	6625	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
225781	chr9	37464741	37466550	+	0	NA	promoter-TSS (NM_014872)	promoter-TSS (NM_014872)	-195	NM_014872	9925		NM_014872	ENSG00000168795	ZBTB5	-	zinc finger and BTB domain containing 5	protein-coding
80360	chr16	2515821	2516080	+	0	NA	intron (NM_001198569, intron 2 of 3)	intron (NM_001198569, intron 2 of 3)	1998	NM_001694	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
68821	chr14	91266101	91266750	+	0	NA	Intergenic	AluSg7|SINE|Alu	-12545	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
190096	chr5	177837171	177837700	+	0	NA	Intergenic	Intergenic	-27928	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
39136	chr11	49780621	49780750	+	0	NA	intron (NR_027044, intron 2 of 6)	L1PA2|LINE|L1	-171706	NM_001001955	283092		NM_001001955	ENSG00000258817	OR4C13	-	olfactory receptor family 4 subfamily C member 13	protein-coding
34827	chr11	297351	298780	+	0	NA	TTS (NM_001025295)	TTS (NM_001025295)	1461	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
115382	chr19	15251001	15251200	+	0	NA	intron (NM_001379292, intron 11 of 11)	intron (NM_001379292, intron 11 of 11)	-18053	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
59161	chr13	21596221	21596480	+	0	NA	intron (NM_152726, intron 1 of 11)	intron (NM_152726, intron 1 of 11)	7820	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
53215	chr12	62279601	62280200	+	0	NA	intron (NM_001351164, intron 1 of 21)	L1M5|LINE|L1	19496	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
54104	chr12	76122621	76123050	+	0	NA	Intergenic	Intergenic	-38150	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
70952	chr14	104679171	104679730	+	0	NA	Intergenic	Intergenic	-1701	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	mir-4710	microRNA 4710	ncRNA
138044	chr2	201415371	201416130	+	0	NA	intron (NM_015049, intron 2 of 15)	L1ME1|LINE|L1	35708	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
136728	chr2	181198271	181198780	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	74688	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
7276	chr1	32374451	32375000	+	0	NA	intron (NR_125352, intron 9 of 11)	intron (NR_125352, intron 9 of 11)	12186	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
68128	chr14	75520121	75520380	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-2219	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
13648	chr1	116514021	116514300	+	0	NA	TTS (NM_001779)	TTS (NM_001779)	-35334	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
125115	chr2	9777771	9778330	+	0	NA	Intergenic	Intergenic	-65392	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
201043	chr6	142148601	142148800	+	0	NA	intron (NM_001286372, intron 1 of 5)	L2a|LINE|L2	1437	NM_016485	51534		NM_016485	ENSG00000009844	VTA1	6orf55|C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1	vesicle trafficking 1	protein-coding
196114	chr6	42378051	42379200	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	73426	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
109910	chr19	1288501	1288730	+	0	NA	intron (NM_001405, intron 1 of 3)	intron (NM_001405, intron 1 of 3)	2742	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
47798	chr12	6575401	6575930	+	0	NA	intron (NM_001273, intron 37 of 39)	intron (NM_001273, intron 37 of 39)	5944	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
120793	chr19	45452721	45454300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1963	NM_001369413	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
43253	chr11	75531171	75531630	+	0	NA	Intergenic	Intergenic	-5459	NM_030792	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
209078	chr7	74793171	74793400	+	0	NA	Intergenic	Intergenic	19323	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
59868	chr13	30624521	30624930	+	0	NA	intron (NM_001321533, intron 2 of 6)	MER65A|LTR|ERV1	6805	NM_005800	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
117692	chr19	28468901	28469500	+	0	NA	intron (NR_110759, intron 5 of 9)	intron (NR_110759, intron 5 of 9)	-137488	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
157612	chr22	46048551	46048850	+	0	NA	non-coding (NR_165243, exon 2 of 2)	non-coding (NR_165243, exon 2 of 2)	-3832	NR_027036	100271722		NR_027036		LINC00899	-	long intergenic non-protein coding RNA 899	ncRNA
210141	chr7	98228001	98228200	+	0	NA	exon (NM_015395, exon 17 of 26)	exon (NM_015395, exon 17 of 26)	16661	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
108249	chr18	63225521	63225880	+	0	NA	intron (NM_000633, intron 2 of 2)	LTR1D1|LTR|ERV1	94069	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
126978	chr2	36357521	36358300	+	0	NA	intron (NM_016441, intron 1 of 16)	intron (NM_016441, intron 1 of 16)	2132	NM_016441	51232		NM_016441	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1	protein-coding
218371	chr8	43178971	43179200	+	0	NA	intron (NM_001363229, intron 9 of 16)	SVA_E|Retroposon|SVA	38621	NM_001363228	138050		NM_025070	ENSG00000165102	HGSNAT	HGNAT|MPS3C|RP73|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
238247	chrX	144178251	144178350	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	294229	NR_121210	389898		NM_001012989	ENSG00000276380	UBE2NL	Li174	ubiquitin conjugating enzyme E2 N like (gene/pseudogene)	protein-coding
68783	chr14	91177121	91177850	+	0	NA	intron (NM_001358311, intron 7 of 13)	intron (NM_001358311, intron 7 of 13)	51059	NR_003709	100124539		NR_003709	ENSG00000221102	SNORA11B	-	small nucleolar RNA, H/ACA box 11B	snoRNA
12687	chr1	109477721	109478180	+	0	NA	exon (NM_001040709, exon 5 of 6)	exon (NM_001040709, exon 5 of 6)	-5955	NM_153340	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
150911	chr21	44212421	44212680	+	0	NA	Intergenic	Intergenic	28393	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
110991	chr19	3032351	3033200	+	0	NA	intron (NM_001144761, intron 2 of 19)	intron (NM_001144761, intron 2 of 19)	-3161	NM_001144762	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
226010	chr9	41643751	41644750	+	0	NA	Intergenic	SST1|Satellite|centr	-3424	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
185450	chr5	131260601	131261080	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3213	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
143804	chr20	32463901	32464300	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	19390	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
18289	chr1	161130051	161130150	+	0	NA	intron (NM_001039711, intron 1 of 4)	intron (NM_001039711, intron 1 of 4)	2366	NM_001039712	9191		NM_004216	ENSG00000158796	DEDD	CASP8IP1|DEDD1|DEDPro1|DEFT|FLDED-1|FLDED1|KE05	death effector domain containing	protein-coding
112647	chr19	6828801	6829400	+	0	NA	intron (NM_005428, intron 13 of 26)	intron (NM_005428, intron 13 of 26)	56392	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
101324	chr17	66667251	66667950	+	0	NA	intron (NM_002737, intron 5 of 16)	THE1C|LTR|ERVL-MaLR	-119472	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
182998	chr5	72298321	72298580	+	0	NA	intron (NM_001286751, intron 2 of 10)	L1PA16|LINE|L1	21790	NM_001286751	23107		NM_015084	ENSG00000113048	MRPS27	MRP-S27|S27mt|mS27	mitochondrial ribosomal protein S27	protein-coding
96297	chr17	39950021	39950680	+	0	NA	Intergenic	MIRc|SINE|MIR	8876	NM_001195545	100505591		NM_001195545	ENSG00000204913	LRRC3C	-	leucine rich repeat containing 3C	protein-coding
223523	chr8	144110671	144111130	+	0	NA	exon (NM_001316309, exon 9 of 24)	exon (NM_001316309, exon 9 of 24)	3161	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
238323	chrX	149527651	149528480	+	0	NA	non-coding (NR_027455, exon 10 of 10)	non-coding (NR_027455, exon 10 of 10)	11687	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
74052	chr15	52496801	52497030	+	0	NA	intron (NM_000259, intron 1 of 40)	LTR16A|LTR|ERVL	31965	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
98353	chr17	46342351	46342680	+	0	NA	intron (NM_001039083, intron 3 of 3).5	intron (NM_001039083, intron 3 of 3).5	19251	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
8787	chr1	42921921	42922300	+	0	NA	Intergenic	AluSg7|SINE|Alu	36758	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
120694	chr19	45161921	45162800	+	0	NA	TTS (NM_001270891)	TTS (NM_001270891)	-2210	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
9579	chr1	51986151	51986250	+	0	NA	intron (NM_002867, intron 1 of 4)	AluY|SINE|Alu	4500	NM_002867	5865		NM_002867	ENSG00000169213	RAB3B	-	RAB3B, member RAS oncogene family	protein-coding
61980	chr13	79531901	79532100	+	0	NA	intron (NM_019080, intron 2 of 7)	Tigger1|DNA|TcMar-Tigger	-34727	NR_125772	103724388		NR_125772	ENSG00000227676	LINC01068	-	long intergenic non-protein coding RNA 1068	ncRNA
147053	chr20	53677971	53678330	+	0	NA	Intergenic	Intergenic	69796	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
165285	chr3	75670421	75670700	+	0	NA	Intergenic	LSAU|Satellite|Satellite	-1721	NR_040005	401074		NR_040004	ENSG00000242516	LINC00960	-	long intergenic non-protein coding RNA 960	ncRNA
4302	chr1	20184651	20184750	+	0	NA	intron (NR_110078, intron 1 of 1)	L2c|LINE|L2	-1396	NM_152376	127733		NM_152376	ENSG00000162543	UBXN10	UBXD3	UBX domain protein 10	protein-coding
74544	chr15	60515251	60515550	+	0	NA	intron (NM_134260, intron 4 of 11)	intron (NM_134260, intron 4 of 11)	36222	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
85004	chr16	31489171	31489430	+	0	NA	TTS (NM_022744)	TTS (NM_022744)	6177	NR_130783	6524		NM_003041	ENSG00000140675	SLC5A2	SGLT2	solute carrier family 5 member 2	protein-coding
206425	chr7	32688071	32688600	+	0	NA	intron (NR_036680, intron 2 of 16)	L1PA2|LINE|L1	30833	NR_036680	100129460		NR_036680		DPY19L1P1	-	DPY19L1 pseudogene 1	pseudo
140910	chr2	237702171	237703830	+	0	NA	intron (NM_001137551, intron 1 of 11)	intron (NM_001137551, intron 1 of 11)	10795	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
216702	chr8	22221751	22222250	+	0	NA	intron (NR_156475, intron 4 of 5)	intron (NR_156475, intron 4 of 5)	10099	NM_014759	9796		NM_014759	ENSG00000168490	PHYHIP	DYRK1AP3|PAHX-AP|PAHXAP1	phytanoyl-CoA 2-hydroxylase interacting protein	protein-coding
18938	chr1	168499771	168499950	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-4216	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
168452	chr3	142987021	142987580	+	0	NA	intron (NR_125393, intron 2 of 4)	intron (NR_125393, intron 2 of 4)	14167	NR_034032	100289361		NR_034032	ENSG00000268129	LOC100289361	-	uncharacterized LOC100289361	ncRNA
203396	chr6	170712771	170713230	+	0	NA	Intergenic	CpG	-128308	NM_001199461	5134		NM_002598	ENSG00000071994	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
107820	chr18	54119571	54119880	+	0	NA	Intergenic	Intergenic	102687	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
166063	chr3	108829251	108830250	+	0	NA	intron (NM_001317747, intron 1 of 4)	Tigger3b|DNA|TcMar-Tigger	6964	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
226169	chr9	64368021	64368430	+	0	NA	Intergenic	Intergenic	-1169	NR_146419	110006327		NR_146419		ANKRD20A4-ANKRD20A20P	-	ANKRD20A4-ANKRD20A20P readthrough	ncRNA
143037	chr20	21133921	21134180	+	0	NA	intron (NM_001163023, intron 2 of 10)	intron (NM_001163023, intron 2 of 10)	7968	NM_001352435	55857		NM_018474	ENSG00000088970	KIZ	C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69	kizuna centrosomal protein	protein-coding
201376	chr6	144856771	144856930	+	0	NA	Intergenic	AluJr4|SINE|Alu	273702	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
63521	chr13	114317301	114317500	+	0	NA	intron (NM_001164145, intron 1 of 2)	AluJr|SINE|Alu	2897	NM_001164144	283489		NM_032436	ENSG00000198824	CHAMP1	C13orf8|CAMP|CHAMP|MRD40|NEDHILD|ZNF828	chromosome alignment maintaining phosphoprotein 1	protein-coding
22105	chr1	211649021	211649380	+	0	NA	intron (NR_131925, intron 2 of 2)	intron (NR_131925, intron 2 of 2)	9392	NR_131925	105748977		NR_131925	ENSG00000227764	NTRAS	LINC01693	non-coding transcript regulating alternative splicing	ncRNA
179136	chr4	169274071	169274230	+	0	NA	Intergenic	Intergenic	-3194	NM_020870	57630		NM_020870	ENSG00000154447	SH3RF1	POSH|RNF142|SH3MD2	SH3 domain containing ring finger 1	protein-coding
21133	chr1	203655401	203656230	+	0	NA	intron (NM_001365784, intron 1 of 20)	Tigger1|DNA|TcMar-Tigger	27878	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
218877	chr8	60538571	60538730	+	0	NA	intron (NM_001242644, intron 1 of 6)	LTR41|LTR|ERVL	21663	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
80025	chr16	1941701	1942280	+	0	NA	intron (NM_016332, intron 1 of 3)	intron (NM_016332, intron 1 of 3)	1209	NM_016332	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
70617	chr14	102802821	102803450	+	0	NA	intron (NM_001199427, intron 1 of 7)	THE1C|LTR|ERVL-MaLR	25656	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
50465	chr12	47755471	47756250	+	0	NA	intron (NM_001098532, intron 1 of 26)	intron (NM_001098532, intron 1 of 26)	2538	NM_001098532	10411		NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
86471	chr16	66952101	66952500	+	0	NA	Intergenic	AluSz6|SINE|Alu	-8966	NM_001185177	23491		NM_012122	ENSG00000172828	CES3	ES31	carboxylesterase 3	protein-coding
199080	chr6	111657971	111658830	+	0	NA	Intergenic	AluJo|SINE|Alu	-52126	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
104775	chr17	81713751	81714530	+	0	NA	intron (NM_012140, intron 1 of 10)	intron (NM_012140, intron 1 of 10)	1856	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
22498	chr1	221737351	221737450	+	0	NA	promoter-TSS (NR_111939)	promoter-TSS (NR_111939)	-500	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
224888	chr9	32382771	32383000	+	0	NA	Intergenic	Intergenic	-1718	NM_001278352	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
114999	chr19	14053751	14054180	+	0	NA	TTS (NM_004843)	TTS (NM_004843)	3673	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
154919	chr22	37204201	37204400	+	0	NA	TTS (NM_001278687)	TTS (NM_001278687)	-4877	NM_001365878	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
158059	chr22	49951771	49952430	+	0	NA	Intergenic	Intergenic	-8672	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
5943	chr1	26885021	26885480	+	0	NA	intron (NM_018066, intron 3 of 4)	intron (NM_018066, intron 3 of 4)	5033	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
185044	chr5	115815951	115816750	+	0	NA	exon (NM_001801, exon 1 of 5)	exon (NM_001801, exon 1 of 5)	309	NR_136618	1036		NM_001801	ENSG00000129596	CDO1	CDO-I	cysteine dioxygenase type 1	protein-coding
157966	chr22	49815151	49815250	+	0	NA	intron (NM_001304808, intron 2 of 12)	intron (NM_001304808, intron 2 of 12)	9131	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
230740	chr9	128864901	128865430	+	0	NA	intron (NM_001352995, intron 1 of 14)	AluJb|SINE|Alu	-4633	NR_148225	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
209162	chr7	75237021	75238200	+	0	NA	promoter-TSS (NR_002206).2	promoter-TSS (NR_002206).2	95	NR_002206	2970		NR_002206	ENSG00000290871	GTF2IP1	WBSCR7	general transcription factor IIi pseudogene 1	pseudo
161538	chr3	42641771	42641930	+	0	NA	intron (NM_001349126, intron 15 of 18)	AluSg|SINE|Alu	-11847	NM_145166	92999		NM_145166	ENSG00000114853	ZBTB47	ZNF651	zinc finger and BTB domain containing 47	protein-coding
126586	chr2	28763601	28764280	+	0	NA	intron (NM_206876, intron 2 of 8)	AluSg|SINE|Alu	12110	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
31300	chr10	92595801	92596150	+	0	NA	intron (NM_004523, intron 1 of 21)	L1MB3|LINE|L1	2845	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
68056	chr14	75251221	75251650	+	0	NA	Intergenic	Intergenic	-27393	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
87081	chr16	68445621	68445980	+	0	NA	intron (NM_018667, intron 1 of 8)	intron (NM_018667, intron 1 of 8)	2708	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
50490	chr12	47785621	47785880	+	0	NA	intron (NR_160435, intron 22 of 24)	intron (NR_160435, intron 22 of 24)	12512	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
190404	chr5	179810171	179810330	+	0	NA	intron (NM_001142299, intron 1 of 8)	L1PA5|LINE|L1	3241	NM_001142299	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
76396	chr15	74626801	74627600	+	0	NA	intron (NM_001130028, intron 7 of 12)	intron (NM_001130028, intron 7 of 12)	11364	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
13426	chr1	114263401	114263600	+	0	NA	Intergenic	Intergenic	-109631	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
138450	chr2	206164001	206164600	+	0	NA	Intergenic	Intergenic	2072	NR_002590	619569		NR_002590	ENSG00000207406	SNORA41	ACA41|SNORA41A	small nucleolar RNA, H/ACA box 41	snoRNA
199201	chr6	111785551	111786130	+	0	NA	intron (NM_002037, intron 2 of 13)	L1PA5|LINE|L1	-25923	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
234478	chrX	17945251	17945550	+	0	NA	Intergenic	Intergenic	-84102	NM_001172732	10742		NM_021785	ENSG00000131831	RAI2	-	retinoic acid induced 2	protein-coding
66707	chr14	64266171	64266630	+	0	NA	intron (NR_073496, intron 4 of 7)	MIRb|SINE|MIR	16675	NR_073497	2100		NM_001437	ENSG00000140009	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8	estrogen receptor 2	protein-coding
163727	chr3	52310551	52311950	+	0	NA	Intergenic	Intergenic	-5069	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
91505	chr17	4943201	4943400	+	0	NA	intron (NM_001375485, intron 6 of 8)	intron (NM_001375485, intron 6 of 8)	3032	NM_001370307	26001		NM_015528	ENSG00000108523	RNF167	5730408C10Rik|LP2254|RING105	ring finger protein 167	protein-coding
92533	chr17	8936321	8936580	+	0	NA	intron (NM_001142633, intron 1 of 18)	L1MC2|LINE|L1	-23933	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
173329	chr4	7648071	7648630	+	0	NA	intron (NM_020777, intron 4 of 26)	intron (NM_020777, intron 4 of 26)	-105740	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
214149	chr7	144364321	144364930	+	0	NA	exon (NM_005435, exon 2 of 15)	exon (NM_005435, exon 2 of 15)	992	NR_033942	728377		NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor 34, pseudogene	pseudo
84925	chr16	31253701	31253900	+	0	NA	Intergenic	L2a|LINE|L2	-6175	NM_001145808	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
169017	chr3	152446051	152446150	+	0	NA	intron (NM_001376853, intron 4 of 5)	intron (NM_001376853, intron 4 of 5)	-105110	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
198193	chr6	96896271	96896430	+	0	NA	intron (NM_014165, intron 2 of 2)	intron (NM_014165, intron 2 of 2)	1541	NM_014165	29078		NM_014165	ENSG00000123545	NDUFAF4	C6orf66|HRPAP20|HSPC125|MC1DN15|My013|bA22L21.1	NADH:ubiquinone oxidoreductase complex assembly factor 4	protein-coding
53654	chr12	68358771	68359400	+	0	NA	Intergenic	Intergenic	-26671	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
203431	chr7	347851	348300	+	0	NA	Intergenic	Intergenic	-31350	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
184856	chr5	112157721	112158000	+	0	NA	intron (NM_001347887, intron 22 of 23)	intron (NM_001347887, intron 22 of 23)	-2666	NR_015370	114915		NM_053000		EPB41L4A-AS1	C5orf26|NCRNA00219|TIGA1	EPB41L4A antisense RNA 1	ncRNA
43773	chr11	86249771	86250550	+	0	NA	intron (NM_001330334, intron 1 of 9)	intron (NM_001330334, intron 1 of 9)	5407	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
6520	chr1	28552451	28554250	+	0	NA	intron (NM_017846, intron 1 of 8)	intron (NM_017846, intron 1 of 8)	265	NM_017846	54952		NM_017846	ENSG00000180098	TRNAU1AP	PRO1902|SECP43|TRSPAP1	tRNA selenocysteine 1 associated protein 1	protein-coding
214092	chr7	143700991	143702300	+	0	NA	intron (NM_001363538, intron 2 of 11)	intron (NM_001363538, intron 2 of 11)	-14201	NM_001130026	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
20849	chr1	201845701	201845900	+	0	NA	intron (NM_018085, intron 1 of 23)	MER33|DNA|hAT-Charlie	-16241	NR_046696	100873949		NR_046696	ENSG00000231871	IPO9-AS1	-	IPO9 antisense RNA 1	ncRNA
97440	chr17	43556071	43556580	+	0	NA	Intergenic	L1ME4b|LINE|L1	-9985	NM_001261437	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
229184	chr9	114610071	114610230	+	0	NA	Intergenic	AluSp|SINE|Alu	-1141	NM_001330760	203197		NM_153045	ENSG00000157693	TMEM268	C9orf91	transmembrane protein 268	protein-coding
49493	chr12	25254151	25254250	+	0	NA	Intergenic	Intergenic	-3271	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
191927	chr6	15592671	15592830	+	0	NA	intron (NM_183040, intron 7 of 8)	intron (NM_183040, intron 7 of 8)	70278	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
153211	chr22	23896501	23896880	+	0	NA	intron (NR_038911, intron 1 of 2).2	MIR3|SINE|MIR	2240	NR_038911	284889		NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA
113291	chr19	8553771	8554130	+	0	NA	intron (NM_012335, intron 4 of 27)	L2a|LINE|L2	23492	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
182612	chr5	66168971	66169130	+	0	NA	intron (NM_139168, intron 8 of 12)	MIRb|SINE|MIR	24215	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
144302	chr20	34716551	34716850	+	0	NA	intron (NM_001242539, intron 11 of 11)	AluJo|SINE|Alu	11981	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
173023	chr4	4502671	4503190	+	0	NA	intron (NM_001346282, intron 1 of 10)	Charlie2a|DNA|hAT-Charlie	-21230	NR_126434	104472519		NR_126434	ENSG00000248221	STX18-IT1	-	STX18 intronic transcript 1	ncRNA
162894	chr3	49392451	49392830	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluSz6|SINE|Alu	19336	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
51564	chr12	52582721	52583480	+	0	NA	Intergenic	Intergenic	-9257	NM_175053	121391		NM_175053	ENSG00000170484	KRT74	ADWH|ECTD7|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4	keratin 74	protein-coding
179713	chr5	12451	13230	+	0	NA	Intergenic	TAR1|Satellite|telo	-79328	NM_052909	153478		NM_052909	ENSG00000153404	PLEKHG4B	ARHGEF48	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
60949	chr13	46542921	46543180	+	0	NA	Intergenic	Intergenic	-10120	NM_015116	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
176510	chr4	94567801	94568030	+	0	NA	intron (NM_006457, intron 3 of 12)	intron (NM_006457, intron 3 of 12)	115973	NR_046186	10611		NM_006457	ENSG00000163110	PDLIM5	ENH|ENH1|L9|LIM	PDZ and LIM domain 5	protein-coding
84717	chr16	30892301	30892650	+	0	NA	intron (NR_110940, intron 2 of 2)	intron (NR_110940, intron 2 of 2)	-1428	NR_031576	100313837		NR_031576	ENSG00000211591	MIR762	hsa-mir-762	microRNA 762	ncRNA
11823	chr1	92847421	92847880	+	0	NA	intron (NM_001006605, intron 3 of 4)	intron (NM_001006605, intron 3 of 4)	6931	NR_002444	26782		NR_002444	ENSG00000207523	SNORA66	RNU66|U66	small nucleolar RNA, H/ACA box 66	snoRNA
131841	chr2	98677871	98678230	+	0	NA	intron (NM_012214, intron 3 of 15)	AluY|SINE|Alu	-14577	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
198342	chr6	104789651	104790200	+	0	NA	intron (NR_146787, intron 9 of 21)	intron (NR_146787, intron 9 of 21)	69621	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
169384	chr3	160452451	160453250	+	0	NA	intron (NR_148403, intron 1 of 20)	intron (NR_148403, intron 1 of 20)	-3012	NR_148402	100174949		NR_148401	ENSG00000248710	TRIM59-IFT80	IFT80-L	TRIM59-IFT80 readthrough (NMD candidate)	ncRNA
11992	chr1	94883521	94884050	+	0	NA	intron (NM_152369, intron 11 of 13)	HAL1b|LINE|L1	42023	NM_001286056	1266		NM_001839	ENSG00000117519	CNN3	-	calponin 3	protein-coding
46125	chr11	123021001	123021350	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	3609	NR_027288	341056		NR_027288		SAE1P1	-	SAE1 pseudogene 1	pseudo
119828	chr19	41359271	41359430	+	0	NA	intron (NM_030578, intron 2 of 3)	AluSx|SINE|Alu	-4597	NM_001369864	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
77692	chr15	85648351	85648880	+	0	NA	intron (NM_007200, intron 10 of 36)	AluJb|SINE|Alu	28665	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
23263	chr1	227889921	227890180	+	0	NA	Intergenic	Intergenic	51633	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
143210	chr20	24959601	24960090	+	0	NA	TTS (NM_003650)	TTS (NM_003650)	10576	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
108276	chr18	63300001	63300600	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	19469	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
4339	chr1	20553471	20553630	+	0	NA	exon (NM_207334, exon 1 of 1)	exon (NM_207334, exon 1 of 1)	977	NM_207334	163933		NM_207334	ENSG00000183114	FAM43B	-	family with sequence similarity 43 member B	protein-coding
76851	chr15	77875101	77875600	+	0	NA	Intergenic	Intergenic	51496	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
176767	chr4	102423451	102423550	+	0	NA	intron (NR_136202, intron 2 of 4)	intron (NR_136202, intron 2 of 4)	-77859	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
179614	chr4	185933271	185933430	+	0	NA	intron (NM_001270771, intron 1 of 23)	intron (NM_001270771, intron 1 of 23)	23022	NM_001270771	8470		NM_003603	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
42815	chr11	72824151	72824450	+	0	NA	intron (NM_033388, intron 8 of 17)	intron (NM_033388, intron 8 of 17)	9889	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
90404	chr17	1308251	1308550	+	0	NA	Intergenic	Intergenic	28738	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
205159	chr7	7231001	7231200	+	0	NA	intron (NM_020156, intron 1 of 3)	L1MEg|LINE|L1	-24054	NR_108073	101927354		NR_108073	ENSG00000230825	LINC03016	-	long intergenic non-protein coding RNA 3016	ncRNA
135157	chr2	157497551	157498030	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-53701	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
190172	chr5	178152271	178152430	+	0	NA	intron (NM_017838, intron 2 of 3)	L2c|LINE|L2	1535	NM_017838	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
65076	chr14	39426551	39427300	+	0	NA	intron (NM_203301, intron 1 of 3)	L2a|LINE|L2	5575	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
126807	chr2	30439771	30440130	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-7296	NM_001304446	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
69187	chr14	92658651	92659130	+	0	NA	intron (NM_024832, intron 6 of 9)	intron (NM_024832, intron 6 of 9)	82656	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
64049	chr14	22536821	22537830	+	0	NA	Intergenic	Intergenic	19737	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
177483	chr4	113901971	113902800	+	0	NA	exon (NM_024590, exon 2 of 2)	exon (NM_024590, exon 2 of 2)	77262	NM_001354210	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
9829	chr1	54050171	54051280	+	0	NA	intron (NM_001305049, intron 1 of 7)	AluSq2|SINE|Alu	2479	NM_001305043	9528		NM_004872	ENSG00000116209	TMEM59	C1orf8|DCF1|HSPC001|PRO195|UNQ169	transmembrane protein 59	protein-coding
166369	chr3	113016701	113017180	+	0	NA	intron (NM_001319112, intron 1 of 7)	intron (NM_001319112, intron 1 of 7)	2731	NM_001319111	25871		NM_015412	ENSG00000163608	NEPRO	ANXD3|C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
185922	chr5	132865851	132867230	+	0	NA	promoter-TSS (NM_014402)	promoter-TSS (NM_014402)	39	NM_001288826	2661		NM_005260	ENSG00000164404	GDF9	POF14	growth differentiation factor 9	protein-coding
157998	chr22	49864001	49864200	+	0	NA	intron (NM_014838, intron 1 of 1)	L1MC5a|LINE|L1	10256	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
117918	chr19	32991401	32991800	+	0	NA	intron (NM_033103, intron 13 of 14)	AluSz6|SINE|Alu	19358	NM_001300978	91442		NM_152266	ENSG00000131944	FAAP24	C19orf40	FA core complex associated protein 24	protein-coding
169230	chr3	157134601	157135130	+	0	NA	Intergenic	Intergenic	-11863	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
11781	chr1	92481671	92484100	+	0	NA	exon (NM_001127215, exon 3 of 7)	exon (NM_001127215, exon 3 of 7)	1069	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
63670	chr14	21065921	21066430	+	0	NA	intron (NM_001282211, intron 1 of 14)	intron (NM_001282211, intron 1 of 14)	-4129	NM_001278529	55701		NM_018071	ENSG00000165801	ARHGEF40	SOLO	Rho guanine nucleotide exchange factor 40	protein-coding
15789	chr1	151247321	151247580	+	0	NA	intron (NM_001135636, intron 13 of 13)	AluY|SINE|Alu	-7284	NM_002810	5710		NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	proteasome 26S subunit ubiquitin receptor, non-ATPase 4	protein-coding
52853	chr12	57106521	57106780	+	0	NA	intron (NR_033659, intron 4 of 20)	intron (NR_033659, intron 4 of 20)	3639	NM_001178079	6778		NM_003153	ENSG00000166888	STAT6	D12S1644|HIES6|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6	protein-coding
53333	chr12	64626521	64626830	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJr|SINE|Alu	-4070	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
107571	chr18	48832351	48833250	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	110007	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
217070	chr8	23472001	23472650	+	0	NA	Intergenic	Intergenic	-14594	NM_001128930	9583		NM_004901	ENSG00000197217	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
99279	chr17	49754851	49755680	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	8866	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
76158	chr15	72740001	72740550	+	0	NA	Intergenic	Intergenic	-42560	NR_040107	100287559		NR_040107	ENSG00000260898	ADPGK-AS1	-	ADPGK antisense RNA 1	ncRNA
168920	chr3	152348851	152349150	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-8010	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
75087	chr15	64391051	64391350	+	0	NA	intron (NM_001321924, intron 1 of 12)	AluSc8|SINE|Alu	3364	NM_016213	9325		NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5	thyroid hormone receptor interactor 4	protein-coding
39909	chr11	62514971	62515130	+	0	NA	TTS (NM_001346446)	TTS (NM_001346446)	30614	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
79176	chr16	302851	303150	+	0	NA	intron (NM_181050, intron 5 of 9)	AluJb|SINE|Alu	19836	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
65283	chr14	50038121	50039130	+	0	NA	intron (NR_131171, intron 6 of 8)	intron (NR_131171, intron 6 of 8)	-31105	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
114124	chr19	11179821	11180280	+	0	NA	intron (NM_015493, intron 4 of 12)	AluSz|SINE|Alu	17495	NM_001379557	25959		NM_015493	ENSG00000197256	KANK2	ANKRD25|MXRA3|NPHS16|PPKWH|SIP	KN motif and ankyrin repeat domains 2	protein-coding
158353	chr22	50461051	50462000	+	0	NA	exon (NM_001365819, exon 22 of 40)	exon (NM_001365819, exon 22 of 40)	13510	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
165102	chr3	71528821	71529080	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	13139	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
142785	chr20	13228771	13229180	+	0	NA	intron (NM_080826, intron 1 of 5)	intron (NM_080826, intron 1 of 5)	7701	NM_080826	140862		NM_080826	ENSG00000101230	ISM1	C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1	isthmin 1	protein-coding
104498	chr17	81165671	81167000	+	0	NA	promoter-TSS (NM_001080395)	promoter-TSS (NM_001080395)	-114	NM_001080395	9625		NM_004920	ENSG00000181409	AATK	AATYK|AATYK1|LMR1|LMTK1|PPP1R77|p35BP	apoptosis associated tyrosine kinase	protein-coding
8736	chr1	42690371	42691450	+	0	NA	intron (NM_004559, intron 2 of 7)	intron (NM_004559, intron 2 of 7)	7774	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
28174	chr10	43781901	43782300	+	0	NA	Intergenic	Intergenic	-3198	NR_134483	102724264		NR_134483	ENSG00000234973	LINC02658	-	long intergenic non-protein coding RNA 2658	ncRNA
154852	chr22	37119551	37119850	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-9987	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
34628	chr10	133305971	133306200	+	0	NA	intron (NR_046330, intron 1 of 17)	intron (NR_046330, intron 1 of 17)	2787	NM_006659	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
133043	chr2	112156521	112157000	+	0	NA	intron (NM_153214, intron 1 of 7)	intron (NM_153214, intron 1 of 7)	18375	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
191174	chr6	5001871	5002230	+	0	NA	intron (NM_006638, intron 2 of 7)	intron (NM_006638, intron 2 of 7)	-1766	NR_126016	100129461		NR_126015	ENSG00000272142	LYRM4-AS1	-	LYRM4 antisense RNA 1	ncRNA
59667	chr13	28658201	28660680	+	0	NA	intron (NM_015932, intron 1 of 5)	intron (NM_015932, intron 1 of 5)	310	NM_015932	51371		NM_015932	ENSG00000132963	POMP	C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1	proteasome maturation protein	protein-coding
79415	chr16	683401	685280	+	0	NA	promoter-TSS (NM_001323920)	promoter-TSS (NM_001323920)	-6	NM_001323919	339123		NM_001005920	ENSG00000161999	JMJD8	C16orf20|PP14397	jumonji domain containing 8	protein-coding
115701	chr19	16206771	16207200	+	0	NA	intron (NM_001130524, intron 3 of 12)	L2|LINE|L2	9074	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
125754	chr2	20962971	20963230	+	0	NA	Intergenic	MIR3|SINE|MIR	80973	NM_000384	338		NM_000384	ENSG00000084674	APOB	FCHL2|FLDB|LDLCQ4|apoB-100|apoB-48	apolipoprotein B	protein-coding
73694	chr15	45022601	45023850	+	0	NA	promoter-TSS (NR_034039)	promoter-TSS (NR_034039)	30	NR_034039	6652		NM_003104	ENSG00000140263	SORD	HEL-S-95n|HMNR8|RDH|SDH|SORD1|SORDD|XDH	sorbitol dehydrogenase	protein-coding
112668	chr19	6963851	6964200	+	0	NA	intron (NR_024075, intron 10 of 15)	LTR16C|LTR|ERVL	26821	NR_024075	326342		NM_001080498		ADGRE4P	EMR4|EMR4P|FIRE|GPR127|PGR16	adhesion G protein-coupled receptor E4, pseudogene	pseudo
196755	chr6	45431371	45432280	+	0	NA	intron (NM_001278478, intron 1 of 5)	intron (NM_001278478, intron 1 of 5)	9550	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
152134	chr22	19970201	19970870	+	0	NA	TTS (NM_001135161)	TTS (NM_001135161)	6782	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
37358	chr11	15073221	15073930	+	0	NA	promoter-TSS (NM_000728)	promoter-TSS (NM_000728)	-18	NM_000728	797		NM_000728	ENSG00000175868	CALCB	CALC2|CGRP-II|CGRP2	calcitonin related polypeptide beta	protein-coding
188100	chr5	150360321	150360580	+	0	NA	intron (NM_001371623, intron 1 of 26)	intron (NM_001371623, intron 1 of 26)	2753	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
180661	chr5	18697721	18698950	+	0	NA	Intergenic	LTR13_|LTR|ERVK	891061	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
61482	chr13	52448971	52449130	+	0	NA	intron (NM_001282168, intron 1 of 13)	intron (NM_001282168, intron 1 of 13)	1194	NM_001282169	51028		NM_016075	ENSG00000136100	VPS36	C13orf9|CGI-145|EAP45	vacuolar protein sorting 36 homolog	protein-coding
7450	chr1	33045571	33046450	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-9099	NM_001319143	204		NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
8504	chr1	40859721	40860000	+	0	NA	Intergenic	Intergenic	2503	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
13847	chr1	117652571	117652730	+	0	NA	Intergenic	Intergenic	46602	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
171821	chr4	670371	670730	+	0	NA	3' UTR (NM_001379247, exon 20 of 20)	3' UTR (NM_001379247, exon 20 of 20)	3726	NM_007100	521		NM_007100	ENSG00000169020	ATP5ME	ATP5I|ATP5K	ATP synthase membrane subunit e	protein-coding
197145	chr6	59535721	59536000	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1574414	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
238268	chrX	148604921	148605000	+	0	NA	intron (NM_001169123, intron 1 of 20)	L1MC4|LINE|L1	104343	NM_001169125	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
39225	chr11	57645771	57646250	+	0	NA	exon (NM_145008, exon 5 of 5)	exon (NM_145008, exon 5 of 5)	3902	NM_145008	219539		NM_145008	ENSG00000166793	YPEL4	-	yippee like 4	protein-coding
70450	chr14	102051821	102052700	+	0	NA	3' UTR (NM_001376, exon 78 of 78)	3' UTR (NM_001376, exon 78 of 78)	34784	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
187962	chr5	149360421	149361250	+	0	NA	intron (NM_001301057, intron 1 of 5)	L2c|LINE|L2	2789	NM_001301054	78991		NM_024028	ENSG00000145882	PCYOX1L	-	prenylcysteine oxidase 1 like	protein-coding
131396	chr2	96265401	96266800	+	0	NA	promoter-TSS (NM_001193304)	promoter-TSS (NM_001193304)	-103	NM_001193304	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
180805	chr5	32312171	32314150	+	0	NA	promoter-TSS (NM_001294343)	promoter-TSS (NM_001294343)	-221	NM_001040446	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
1911	chr1	6463421	6463950	+	0	NA	TTS (NM_001039664)	TTS (NM_001039664)	2488	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
56356	chr12	113087701	113088450	+	0	NA	intron (NM_004416, intron 3 of 9)	intron (NM_004416, intron 3 of 9)	31345	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
119	chr1	493351	493450	+	0	NA	non-coding (NR_028322, exon 3 of 3)	non-coding (NR_028322, exon 3 of 3)	2045	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
66219	chr14	61320301	61320500	+	0	NA	Intergenic	AluSp|SINE|Alu	-1043	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
33006	chr10	110607421	110607680	+	0	NA	Intergenic	AluSz|SINE|Alu	-36786	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
143128	chr20	23589351	23589730	+	0	NA	Intergenic	L1PA2|LINE|L1	16377	NM_001008693	128822		NM_001008693	ENSG00000173335	CST9	CLM|CTES7A	cystatin 9	protein-coding
194843	chr6	34422321	34423600	+	0	NA	intron (NM_001203245, intron 3 of 5)	AluSz|SINE|Alu	3109	NM_001204091	6204		NM_001014	ENSG00000124614	RPS10	DBA9|S10|eS10	ribosomal protein S10	protein-coding
776	chr1	1531021	1531280	+	0	NA	intron (NM_018188, intron 15 of 15)	AluSx|SINE|Alu	9474	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
125903	chr2	24823921	24824180	+	0	NA	intron (NM_001377132, intron 17 of 21)	intron (NM_001377132, intron 17 of 21)	30625	NM_001199803	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
234795	chrX	24015901	24016300	+	0	NA	intron (NM_030624, intron 2 of 3)	AluY|SINE|Alu	11086	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
59378	chr13	24743171	24743330	+	0	NA	Intergenic	Intergenic	-20919	NM_001184993	56163		NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
16713	chr1	155235301	155236150	+	0	NA	exon (NM_001005742, exon 10 of 12)	exon (NM_001005742, exon 10 of 12)	5524	NM_001171812	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
12888	chr1	110341171	110341330	+	0	NA	exon (NM_001201545, exon 1 of 2)	exon (NM_001201545, exon 1 of 2)	1873	NM_022768	64783		NM_014092	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding
5414	chr1	25543121	25545300	+	0	NA	intron (NM_015627, intron 1 of 8)	CpG	604	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
218899	chr8	60679501	60681050	+	0	NA	intron (NM_017780, intron 1 of 37)	CpG	1535	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
216381	chr8	17912551	17913130	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-10017	NM_001352660	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
128988	chr2	64730271	64731430	+	0	NA	Intergenic	Intergenic	-76937	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
114977	chr19	14027851	14028400	+	0	NA	promoter-TSS (NM_001311197)	promoter-TSS (NM_001311197)	-23	NM_001311197	117579		NM_080864	ENSG00000171136	RLN3	H3|RXN3|ZINS4|insl7	relaxin 3	protein-coding
233324	chr9	137430951	137432000	+	0	NA	intron (NM_001256068, intron 6 of 11)	intron (NM_001256068, intron 6 of 11)	8080	NM_001256068	10811		NM_006647	ENSG00000188747	NOXA1	NY-CO-31|SDCCAG31|p51NOX	NADPH oxidase activator 1	protein-coding
228524	chr9	100429101	100429300	+	0	NA	promoter-TSS (NM_001198806)	promoter-TSS (NM_001198806)	-314	NM_001198806	91283		NM_080655	ENSG00000066697	MSANTD3	C9orf30|L8	Myb/SANT DNA binding domain containing 3	protein-coding
96464	chr17	40231501	40231700	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSg7|SINE|Alu	12296	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
14598	chr1	145237301	145237600	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	4749	NM_001164262	728945		NM_001164262	ENSG00000279782	PPIAL4F	-	peptidylprolyl isomerase A like 4F	protein-coding
121918	chr19	48423751	48424050	+	0	NA	intron (NM_000836, intron 11 of 13)	AluSx|SINE|Alu	-22083	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
125653	chr2	19985321	19985580	+	0	NA	intron (NM_020779, intron 2 of 26)	intron (NM_020779, intron 2 of 26)	4655	NM_020779	57539		NM_020779	ENSG00000118965	WDR35	CED2|CFAP118|FAP118|IFT121|IFTA1|SRTD7	WD repeat domain 35	protein-coding
145888	chr20	45953021	45953430	+	0	NA	intron (NM_022095, intron 18 of 27)	intron (NM_022095, intron 18 of 27)	18542	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
190229	chr5	178246551	178246650	+	0	NA	intron (NM_173465, intron 22 of 28)	intron (NM_173465, intron 22 of 28)	-13778	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
12181	chr1	100367021	100367380	+	0	NA	intron (NM_001319210, intron 2 of 16)	intron (NM_001319210, intron 2 of 16)	14694	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
35600	chr11	1754751	1755050	+	0	NA	intron (NM_001909, intron 6 of 8)	intron (NM_001909, intron 6 of 8)	-4305	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
93983	chr17	21978301	21978500	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-224595	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
221070	chr8	116878301	116878880	+	0	NA	Intergenic	L3|LINE|CR1	-3790	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
136539	chr2	177327001	177327600	+	0	NA	intron (NR_026966, intron 5 of 8)	L2c|LINE|L2	-13418	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
148803	chr21	8242501	8244060	+	0	NA	intron (NR_003287, intron 1 of 2)	Tigger19b|DNA|TcMar-Tigger	-6225	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
206537	chr7	35185971	35186700	+	0	NA	promoter-TSS (NR_002833)	promoter-TSS (NR_002833)	-173	NR_002833	554236		NM_001024657	ENSG00000291133	DPY19L2P1	-	DPY19L2 pseudogene 1	pseudo
22733	chr1	224328521	224328780	+	0	NA	intron (NM_002533, intron 1 of 22)	L2a|LINE|L2	1522	NM_002533	4931		NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP like	protein-coding
182809	chr5	69042601	69043550	+	0	NA	Intergenic	Intergenic	-13148	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
75439	chr15	65807271	65808250	+	0	NA	Intergenic	L1ME1|LINE|L1	-15467	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
71431	chr14	105623171	105623530	+	0	NA	Intergenic	Intergenic	2234	NR_107059	102466889		NR_107059	ENSG00000277030	MIR8071-2	hsa-mir-8071-2	microRNA 8071-2	ncRNA
68744	chr14	91034071	91034880	+	0	NA	intron (NM_001322228, intron 1 of 15)	LTR12|LTR|ERV1	25649	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
109789	chr19	1148151	1148250	+	0	NA	intron (NM_014963, intron 3 of 31)	intron (NM_014963, intron 3 of 31)	-15979	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
131368	chr2	96203071	96204730	+	0	NA	intron (NM_001385622, intron 1 of 7)	AluSz|SINE|Alu	-4516	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
98018	chr17	45393421	45394080	+	0	NA	TTS (NM_199282).2	TTS (NM_199282).2	16636	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
80870	chr16	3577901	3578500	+	0	NA	promoter-TSS (NR_075083)	promoter-TSS (NR_075083)	-797	NR_075083	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
72922	chr15	40382571	40383800	+	0	NA	intron (NM_001142761, intron 1 of 8)	CpG	464	NM_001142761	90417		NM_033286	ENSG00000128944	KNSTRN	C15orf23|HSD11|ROCHIS|SKAP|TRAF4AF1	kinetochore localized astrin (SPAG5) binding protein	protein-coding
84209	chr16	29877491	29878380	+	0	NA	intron (NM_001114099, intron 10 of 16)	intron (NM_001114099, intron 10 of 16)	14101	NR_015396	440356		NR_015396	ENSG00000293487	CDIPTOSP	CDIPT-AS1|lnc-CTHCC	CDIP transferase opposite strand, pseudogene	ncRNA
56198	chr12	111448421	111448950	+	0	NA	3' UTR (NM_001291424, exon 7 of 7)	3' UTR (NM_001291424, exon 7 of 7)	13823	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
112940	chr19	7699271	7699830	+	0	NA	promoter-TSS (NM_001207019)	promoter-TSS (NM_001207019)	-71	NM_001207019	2208		NM_002002	ENSG00000104921	FCER2	BLAST-2|CD23|CD23A|CLEC4J|FCE2|FCErII|IGEBF	Fc epsilon receptor II	protein-coding
72893	chr15	40333771	40334630	+	0	NA	3' UTR (NM_207380, exon 11 of 11)	3' UTR (NM_207380, exon 11 of 11)	6767	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
21705	chr1	206736701	206738180	+	0	NA	Intergenic	Intergenic	33163	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
39672	chr11	61694171	61694580	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	13984	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
106663	chr18	23073101	23073500	+	0	NA	Intergenic	AluJb|SINE|Alu	-61264	NR_023359	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
185407	chr5	129114601	129115000	+	0	NA	TTS (NM_016048)	TTS (NM_016048)	17112	NR_039776	100616175		NR_039776	ENSG00000264563	MIR4633	-	microRNA 4633	ncRNA
237591	chrX	123862421	123862680	+	0	NA	intron (NM_001378590, intron 1 of 6)	intron (NM_001378590, intron 1 of 6)	2100	NM_001378590	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
126782	chr2	30261551	30262380	+	0	NA	Intergenic	L1M4|LINE|L1	30431	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
192225	chr6	18263911	18265730	+	0	NA	promoter-TSS (NM_003472)	promoter-TSS (NM_003472)	-290	NM_001134709	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
190047	chr5	177540251	177540350	+	0	NA	intron (NM_001190946, intron 1 of 8)	AluSc8|SINE|Alu	13795	NM_001366498	54540		NM_019057	ENSG00000146067	FAM193B	IRIZIO	family with sequence similarity 193 member B	protein-coding
155926	chr22	39622601	39623700	+	0	NA	intron (NM_001003406, intron 4 of 35)	intron (NM_001003406, intron 4 of 35)	52397	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
56891	chr12	120317001	120318200	+	0	NA	Intergenic	CpG	10179	NM_000928	5319		NM_000928	ENSG00000170890	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2 group IB	protein-coding
74583	chr15	60556451	60556550	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	36026	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
115639	chr19	16106671	16107030	+	0	NA	Intergenic	Intergenic	-5039	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
56405	chr12	113229621	113230280	+	0	NA	intron (NM_001143819, intron 3 of 28)	L2c|LINE|L2	8486	NM_017901	53373		NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
1654	chr1	3858501	3858900	+	0	NA	intron (NR_104222, intron 1 of 7)	CpG	1224	NR_135151	1677		NM_004402	ENSG00000169598	DFFB	CAD|CPAN|DFF-40|DFF2|DFF40	DNA fragmentation factor subunit beta	protein-coding
88839	chr16	87495251	87495900	+	0	NA	intron (NR_110943, intron 1 of 3)	MLT1C|LTR|ERVL-MaLR	1388	NR_110943	101928737		NR_110943	ENSG00000288568	ZCCHC14-DT	-	ZCCHC14 divergent transcript	ncRNA
140617	chr2	233424371	233424600	+	0	NA	intron (NM_001377259, intron 1 of 27)	L3|LINE|CR1	5273	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
107419	chr18	46185301	46185650	+	0	NA	intron (NM_145055, intron 1 of 4)	intron (NM_145055, intron 1 of 4)	11441	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
140789	chr2	235746351	235746880	+	0	NA	intron (NM_001037131, intron 5 of 17)	intron (NM_001037131, intron 5 of 17)	-228694	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
116211	chr19	17499951	17500850	+	0	NA	exon (NM_198580, exon 8 of 12)	exon (NM_198580, exon 8 of 12)	-11249	NM_012088	25796		NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
213758	chr7	140492901	140493380	+	0	NA	Intergenic	Intergenic	-13571	NM_001145125	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
237417	chrX	119619871	119620650	+	0	NA	intron (NM_145799, intron 10 of 10)	intron (NM_145799, intron 10 of 10)	-13836	NR_163972	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
156291	chr22	40487401	40488000	+	0	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-24260	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
57652	chr12	122526401	122527800	+	0	NA	promoter-TSS (NM_023012)	promoter-TSS (NM_023012)	-149	NM_014708	9735		NM_014708	ENSG00000184445	KNTC1	ROD	kinetochore associated 1	protein-coding
203347	chr6	170288671	170290180	+	0	NA	intron (NM_005618, intron 2 of 10)	CpG	-1278	NM_001286379	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
133349	chr2	113944571	113944730	+	0	NA	intron (NM_005721, intron 8 of 11)	AluY|SINE|Alu	-24672	NR_148507	440900		NR_034128	ENSG00000234199	LINC01191	VIN|lnc-ACTR3	long intergenic non-protein coding RNA 1191	ncRNA
128549	chr2	60878801	60879100	+	0	NA	intron (NR_033980, intron 1 of 2)	AluSx|SINE|Alu	2364	NR_033980	400957		NR_033980	ENSG00000228414	REL-DT	LINC01185	REL divergent transcript	ncRNA
104466	chr17	81115871	81116030	+	0	NA	non-coding (NR_169574, exon 16 of 16)	non-coding (NR_169574, exon 16 of 16)	9423	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
203223	chr6	168614571	168614730	+	0	NA	intron (NM_022138, intron 9 of 12)	TAR1|Satellite|telo	173466	NM_022138	64094		NM_022138	ENSG00000112562	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding
55740	chr12	108335171	108335330	+	0	NA	intron (NM_004072, intron 1 of 2)	intron (NM_004072, intron 1 of 2)	4061	NM_001142343	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
123672	chr19	54919601	54919900	+	0	NA	Intergenic	LTR13|LTR|ERVK	13602	NM_001242356	9437		NM_004829	ENSG00000189430	NCR1	CD335|LY94|NK-p46|NKP46	natural cytotoxicity triggering receptor 1	protein-coding
225302	chr9	34575871	34576580	+	0	NA	intron (NM_001842, intron 1 of 8)	intron (NM_001842, intron 1 of 8)	8213	NR_024369	415056		NR_024369	ENSG00000237159	CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
173590	chr4	10421371	10421930	+	0	NA	Intergenic	Intergenic	35776	NM_053042	85460		NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
49738	chr12	31658501	31659950	+	0	NA	promoter-TSS (NM_001135863)	promoter-TSS (NM_001135863)	22	NM_173802	254013		NM_173802	ENSG00000139160	ETFBKMT	C12orf72|ETFB-KMT|METTL20	electron transfer flavoprotein subunit beta lysine methyltransferase	protein-coding
95863	chr17	38846001	38846480	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4802	NM_001080465	388381		NM_001080465	ENSG00000275489	SPMAP1	C17orf98	sperm microtubule associated protein 1	protein-coding
214238	chr7	148874121	148874580	+	0	NA	intron (NM_001203248, intron 1 of 19)	AluJb|SINE|Alu	9135	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
165474	chr3	99294051	99294150	+	0	NA	Intergenic	L1PA3|LINE|L1	-344494	NM_001850	1295		NM_001850	ENSG00000144810	COL8A1	C3orf7	collagen type VIII alpha 1 chain	protein-coding
37196	chr11	14312421	14312680	+	0	NA	intron (NM_001177314, intron 1 of 5)	AluJr|SINE|Alu	45935	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
3327	chr1	15421501	15422400	+	0	NA	intron (NM_024329, intron 1 of 3)	MIRb|SINE|MIR	12062	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
25154	chr10	4835251	4835830	+	0	NA	intron (NM_001271021, intron 3 of 7)	MIR3|SINE|MIR	9333	NM_001040177	83592		NM_031436	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|HTSP1|LoopADR|TAKR|hTSP|htAKR	aldo-keto reductase family 1 member E2	protein-coding
54322	chr12	89533221	89533850	+	0	NA	intron (NR_146294, intron 1 of 1)	intron (NR_146294, intron 1 of 1)	-7273	NM_001199782	100528030		NM_001199781	ENSG00000259075	POC1B-GALNT4	GALNT4|GalNAc-T4	POC1B-GALNT4 readthrough	protein-coding
152616	chr22	21421701	21421900	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	4429	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
112696	chr19	7068771	7070200	+	0	NA	promoter-TSS (NM_001044387)	promoter-TSS (NM_001044387)	-218	NM_001044387	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
49569	chr12	26936851	26940330	+	0	NA	promoter-TSS (NM_018164)	promoter-TSS (NM_018164)	120	NM_015633	26127		NM_015633	ENSG00000111790	FGFR1OP2	HSPC123-like|WIT3.0	FGFR1 oncogene partner 2	protein-coding
212190	chr7	117068551	117068850	+	0	NA	intron (NM_001369599, intron 1 of 15)	intron (NM_001369599, intron 1 of 15)	22081	NR_109980	93654		NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
60767	chr13	45078001	45078400	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-28079	NR_120424	101929259		NR_120424		LOC101929259	-	uncharacterized LOC101929259	ncRNA
238296	chrX	149488671	149489250	+	0	NA	intron (NM_006123, intron 7 of 7)	intron (NM_006123, intron 7 of 7)	16346	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
109617	chr19	947671	948150	+	0	NA	intron (NM_005224, intron 3 of 8)	CpG	21875	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
146290	chr20	49132871	49133430	+	0	NA	intron (NM_001322927, intron 4 of 11)	intron (NM_001322927, intron 4 of 11)	55184	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
106764	chr18	23620801	23621400	+	0	NA	intron (NM_173505, intron 6 of 9)	LTR81C|LTR|Gypsy	-34594	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
191402	chr6	8219421	8219680	+	0	NA	Intergenic	Intergenic	-116955	NR_037618	100526837		NR_037618		EEF1E1-BLOC1S5	EEF1E1-MUTED	EEF1E1-BLOC1S5 readthrough (NMD candidate)	ncRNA
9390	chr1	47416371	47417230	+	0	NA	exon (NM_012186, exon 1 of 1)	exon (NM_012186, exon 1 of 1)	515	NM_012186	2301		NM_012186	ENSG00000186790	FOXE3	AAT11|ASGD2|CATC3|CTRCT34|FKHL12|FREAC8	forkhead box E3	protein-coding
83768	chr16	28724951	28725250	+	0	NA	TTS (NR_106922).2	TTS (NR_106922).2	848	NR_107058	102465907		NR_107058	ENSG00000278340	MIR6862-2	hsa-mir-6862-2	microRNA 6862-2	ncRNA
187134	chr5	140462571	140462930	+	0	NA	intron (NM_001197030, intron 9 of 9)	L1MC5|LINE|L1	60917	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
67846	chr14	73953551	73954000	+	0	NA	intron (NM_182476, intron 2 of 11)	intron (NM_182476, intron 2 of 11)	3473	NM_182476	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
9044	chr1	44794501	44794800	+	0	NA	Intergenic	AluJo|SINE|Alu	-5727	NM_004073	1263		NM_004073	ENSG00000173846	PLK3	CNK|FNK|PLK-3|PRK	polo like kinase 3	protein-coding
64310	chr14	23571051	23571350	+	0	NA	exon (NM_032452, exon 6 of 7)	exon (NM_032452, exon 6 of 7)	-3409	NR_148937	8906		NM_003917	ENSG00000213983	AP1G2	G2AD	adaptor related protein complex 1 subunit gamma 2	protein-coding
154780	chr22	36606671	36606830	+	0	NA	intron (NR_166440, intron 1 of 4)	intron (NR_166440, intron 1 of 4)	-77584	NR_156418	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
100322	chr17	59840261	59841750	+	0	NA	promoter-TSS (NR_029493)	promoter-TSS (NR_029493)	-261	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
47433	chr12	3275221	3275770	+	0	NA	intron (NM_006675, intron 3 of 8)	intron (NM_006675, intron 3 of 8)	90627	NR_148995	100128253		NR_148995		LOC100128253	-	uncharacterized LOC100128253	ncRNA
38459	chr11	45646521	45646800	+	0	NA	Intergenic	Intergenic	18962	NM_003654	8534		NM_003654	ENSG00000175264	CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate sulfotransferase 1	protein-coding
203841	chr7	1446751	1446850	+	0	NA	exon (NM_182924, exon 5 of 17)	exon (NM_182924, exon 5 of 17)	12670	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
82055	chr16	12803301	12804530	+	0	NA	promoter-TSS (NM_001099455)	promoter-TSS (NM_001099455)	-28	NM_018340	55313		NM_018340	ENSG00000103381	CPPED1	CSTP1	calcineurin like phosphoesterase domain containing 1	protein-coding
46236	chr11	124670751	124671250	+	0	NA	intron (NM_001199922, intron 3 of 11)	intron (NM_001199922, intron 3 of 11)	2739	NM_170601	54414		NM_018978	ENSG00000110013	SIAE	AIS6|CSE-C|CSEC|LSE|YSG2	sialic acid acetylesterase	protein-coding
106286	chr18	12709221	12709480	+	0	NA	intron (NM_147163, intron 2 of 6)	AluSx1|SINE|Alu	6308	NM_020232	56984		NM_020232	ENSG00000128789	PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|PRAAS4|TNFSF5IP1	proteasome assembly chaperone 2	protein-coding
208409	chr7	66737601	66738000	+	0	NA	intron (NM_001367727, intron 4 of 11)	AluJb|SINE|Alu	-2933	NM_001287062	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
119104	chr19	39325651	39326950	+	0	NA	Intergenic	Intergenic	-5437	NM_020862	57622		NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
138407	chr2	204982271	204982430	+	0	NA	intron (NM_205863, intron 3 of 21)	intron (NM_205863, intron 3 of 21)	436875	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
129151	chr2	65572901	65573380	+	0	NA	Intergenic	Intergenic	-140541	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
177158	chr4	108139171	108139550	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	27437	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
234822	chrX	24158271	24158630	+	0	NA	intron (NM_001330327, intron 3 of 10)	L1M5|LINE|L1	8721	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
171570	chr3	196967651	196967750	+	0	NA	intron (NM_025163, intron 1 of 2)	intron (NM_025163, intron 1 of 2)	1133	NM_025163	80235		NM_025163	ENSG00000119227	PIGZ	GPI-MT-IV|PIG-Z|SMP3	phosphatidylinositol glycan anchor biosynthesis class Z	protein-coding
121692	chr19	47539601	47540280	+	0	NA	intron (NM_001277075, intron 7 of 16)	intron (NM_001277075, intron 7 of 16)	-24877	NR_038456	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
144781	chr20	36631801	36632330	+	0	NA	intron (NM_175077, intron 5 of 7)	intron (NM_175077, intron 5 of 7)	14131	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
83539	chr16	27722151	27722450	+	0	NA	intron (NM_015202, intron 14 of 27)	HY1|scRNA|scRNA	-3271	NR_147898	100128079		NR_147898		LOC100128079	-	uncharacterized LOC100128079	ncRNA
193929	chr6	31646371	31647080	+	0	NA	intron (NM_080702, intron 7 of 24).6	AluSx1|SINE|Alu	5665	NM_001098534	7917		NM_004639	ENSG00000204463	BAG6	BAG-6|BAT3|D6S52E|G3	BAG cochaperone 6	protein-coding
7116	chr1	32171421	32171680	+	0	NA	3' UTR (NM_012316, exon 14 of 14)	3' UTR (NM_012316, exon 14 of 14)	-8125	NM_175852	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
2559	chr1	9763771	9763930	+	0	NA	intron (NM_001302883, intron 2 of 17)	intron (NM_001302883, intron 2 of 17)	60115	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
3375	chr1	15683201	15683530	+	0	NA	promoter-TSS (NM_015164)	promoter-TSS (NM_015164)	-955	NM_015164	23207		NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology and RUN domain containing M2	protein-coding
178024	chr4	139452101	139452300	+	0	NA	non-coding (NR_159964, exon 1 of 1)	non-coding (NR_159964, exon 1 of 1)	1841	NR_159964	107984036		NR_159963		RAB33B-AS1	-	RAB33B antisense RNA 1	ncRNA
139066	chr2	218855371	218855850	+	0	NA	Intergenic	Intergenic	-4195	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
42540	chr11	71607151	71607450	+	0	NA	Intergenic	CpG	-24425	NM_001005405	440051		NM_001005405	ENSG00000204571	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
176748	chr4	101530101	101530680	+	0	NA	Intergenic	L1PB1|LINE|L1	182613	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
5749	chr1	26476601	26477250	+	0	NA	TTS (NM_005517)	TTS (NM_005517)	4485	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
232460	chr9	136193621	136194080	+	0	NA	Intergenic	CpG	7824	NM_001363746	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
57917	chr12	123511101	123511500	+	0	NA	intron (NM_178314, intron 2 of 6)	(TG)n|Simple_repeat|Simple_repeat	8926	NM_001319244	353116		NM_178314	ENSG00000188026	RILPL1	GOSPEL|OPDM4|RLP1	Rab interacting lysosomal protein like 1	protein-coding
153354	chr22	24422421	24422900	+	0	NA	promoter-TSS (NM_001278500)	promoter-TSS (NM_001278500)	-937	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
108138	chr18	62521301	62521500	+	0	NA	Intergenic	Intergenic	-1625	NM_017742	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
6261	chr1	27572521	27572980	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	30744	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
11465	chr1	89966771	89966930	+	0	NA	Intergenic	Intergenic	28116	NR_002830	492303		NR_002830		GEMIN8P4	-	gem nuclear organelle associated protein 8 pseudogene 4	pseudo
149322	chr21	29029201	29029600	+	0	NA	intron (NM_006447, intron 2 of 17)	AluY|SINE|Alu	4732	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
141333	chr2	240571151	240572000	+	0	NA	intron (NM_018226, intron 1 of 10)	intron (NM_018226, intron 1 of 10)	3091	NM_018226	57140		NM_018226	ENSG00000142327	RNPEPL1	-	arginyl aminopeptidase like 1	protein-coding
105860	chr18	3062661	3063380	+	0	NA	Intergenic	L1MEc|LINE|L1	-49876	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
69681	chr14	98144721	98144980	+	0	NA	Intergenic	AluSc|SINE|Alu	-166726	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
114808	chr19	13799671	13800400	+	0	NA	intron (NM_023072, intron 2 of 12)	intron (NM_023072, intron 2 of 12)	4592	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
152962	chr22	23016501	23017100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-53719	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
91673	chr17	5545451	5545780	+	0	NA	intron (NM_014922, intron 5 of 15)	intron (NM_014922, intron 5 of 15)	38894	NM_001033053	22861		NM_014922	ENSG00000091592	NLRP1	AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|JRRP|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
11490	chr1	90730321	90730830	+	0	NA	Intergenic	Intergenic	-13273	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
216506	chr8	20261851	20261950	+	0	NA	intron (NM_021020, intron 1 of 3)	intron (NM_021020, intron 1 of 3)	11635	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
232791	chr9	136702451	136702550	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-10072	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
57725	chr12	122880001	122880200	+	0	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	16024	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
44424	chr11	104254551	104254650	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-90453	NM_025208	80310		NM_025208	ENSG00000170962	PDGFD	IEGF|MSTP036|SCDGF-B|SCDGFB	platelet derived growth factor D	protein-coding
230518	chr9	128320371	128320530	+	0	NA	intron (NM_001329861, intron 1 of 6)	AluSp|SINE|Alu	1768	NM_001329862	26995		NM_015679	ENSG00000167112	TRUB2	CLONE24922	TruB pseudouridine synthase family member 2	protein-coding
70818	chr14	103566771	103567300	+	0	NA	intron (NR_126431, intron 2 of 5)	AluJb|SINE|Alu	4075	NM_001302652	84334		NM_001302652	ENSG00000256053	COA8	APOP|APOP1|APOPT1|C14orf153|MC4DN17	cytochrome c oxidase assembly factor 8	protein-coding
223090	chr8	143422051	143422700	+	0	NA	Intergenic	Intergenic	4696	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
216887	chr8	22668301	22669390	+	0	NA	intron (NR_156436, intron 1 of 9)	CpG	276	NM_018688	55909		NM_018688	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
235956	chrX	53420821	53421080	+	0	NA	intron (NM_006306, intron 1 of 24)	intron (NM_006306, intron 1 of 24)	1704	NM_006306	8243		NM_006306	ENSG00000072501	SMC1A	CDLS2|DEE85|DXS423E|EIEE85|SB1.8|SMC1|SMC1L1|SMC1alpha|SMCB	structural maintenance of chromosomes 1A	protein-coding
194221	chr6	32201071	32201230	+	0	NA	exon (NM_004557, exon 22 of 30)	exon (NM_004557, exon 22 of 30)	-5627	NM_022107	63940		NM_022107	ENSG00000213654	GPSM3	AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1	G protein signaling modulator 3	protein-coding
7323	chr1	32653621	32654130	+	0	NA	intron (NM_005610, intron 2 of 11)	AluY|SINE|Alu	2517	NM_001135256	5928		NM_005610	ENSG00000162521	RBBP4	NURF55|RBAP48|lin-53	RB binding protein 4, chromatin remodeling factor	protein-coding
200923	chr6	139149171	139149550	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	14280	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
119565	chr19	40634121	40635180	+	0	NA	Intergenic	Intergenic	33281	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
70111	chr14	100241341	100241780	+	0	NA	intron (NM_003403, intron 1 of 4)	intron (NM_003403, intron 1 of 4)	2416	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
168627	chr3	149701451	149702140	+	0	NA	intron (NM_001348362, intron 3 of 9)	intron (NM_001348362, intron 3 of 9)	1478	NM_001168278	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
50781	chr12	49039251	49039750	+	0	NA	exon (NM_003482, exon 33 of 55)	exon (NM_003482, exon 33 of 55)	-20724	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
97942	chr17	45217171	45217900	+	0	NA	intron (NR_147507, intron 2 of 2)	(CCTT)n|Simple_repeat|Simple_repeat	4230	NR_147507	339192		NR_147507	ENSG00000267121	FMNL1-DT	-	FMNL1 divergent transcript	ncRNA
49820	chr12	32025521	32026480	+	0	NA	Intergenic	HERVIP10F-int|LTR|ERV1	66585	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
54092	chr12	76075771	76076380	+	0	NA	intron (NM_139207, intron 1 of 15)	intron (NM_139207, intron 1 of 15)	8610	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
128576	chr2	60904901	60905280	+	0	NA	intron (NM_001291746, intron 4 of 9)	intron (NM_001291746, intron 4 of 9)	23516	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133376	chr2	118023451	118023550	+	0	NA	Intergenic	AluY|SINE|Alu	-9430	NM_019044	54520		NM_019044	ENSG00000125633	CCDC93	-	coiled-coil domain containing 93	protein-coding
65244	chr14	49894201	49894800	+	0	NA	3' UTR (NM_001663, exon 2 of 2)	3' UTR (NM_001663, exon 2 of 2)	1418	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
235606	chrX	47658401	47659680	+	0	NA	non-coding (NR_045559, exon 1 of 5)	non-coding (NR_045559, exon 1 of 5)	140	NM_153477	8409		NM_004182	ENSG00000126756	UXT	ART-27|SKP2|STAP1	ubiquitously expressed prefoldin like chaperone	protein-coding
126850	chr2	31778471	31778630	+	0	NA	Intergenic	L1PREC2|LINE|L1	25430	NR_146994	105374449		NR_146994	ENSG00000223647	LINC01946	-	long intergenic non-protein coding RNA 1946	ncRNA
157809	chr22	46816501	46816700	+	0	NA	intron (NM_001284305, intron 4 of 12)	intron (NM_001284305, intron 4 of 12)	42673	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
206316	chr7	30282671	30283030	+	0	NA	intron (NR_136267, intron 1 of 3)	intron (NR_136267, intron 1 of 3)	-1747	NM_147128	223082		NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
135100	chr2	157385951	157386580	+	0	NA	Intergenic	L1PA8A|LINE|L1	-5756	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
227455	chr9	90815201	90815630	+	0	NA	intron (NM_001174168, intron 1 of 12)	intron (NM_001174168, intron 1 of 12)	-12005	NM_001174167	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
18547	chr1	162497251	162498730	+	0	NA	5' UTR (NM_175866, exon 1 of 8)	5' UTR (NM_175866, exon 1 of 8)	172	NM_175866	127933		NM_144624	ENSG00000152332	UHMK1	KIS|KIST|P-CIP2	U2AF homology motif kinase 1	protein-coding
141039	chr2	238229771	238230350	+	0	NA	intron (NR_026926, intron 1 of 2)	L2|LINE|L2	1617	NR_026926	151174		NR_026925	ENSG00000186235	LINC02610	-	long intergenic non-protein coding RNA 2610	ncRNA
85192	chr16	46949151	46949530	+	0	NA	Intergenic	MIRb|SINE|MIR	24334	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
119472	chr19	40438921	40439180	+	0	NA	Intergenic	Intergenic	3548	NM_013368	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
191620	chr6	12182771	12182950	+	0	NA	Intergenic	Intergenic	-107501	NM_001955	1906		NM_001955	ENSG00000078401	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
178942	chr4	159003221	159003480	+	0	NA	intron (NM_152543, intron 1 of 4)	MIRb|SINE|MIR	31879	NM_152543	152940		NM_152543	ENSG00000164123	SPMIP2	C4orf45	sperm microtubule inner protein 2	protein-coding
187616	chr5	142972551	142972850	+	0	NA	intron (NR_146198, intron 11 of 22)	L1MA9|LINE|L1	-103790	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
10564	chr1	67213151	67213450	+	0	NA	intron (NM_144701, intron 6 of 10)	MIR|SINE|MIR	46846	NM_144701	149233		NM_144701	ENSG00000162594	IL23R	PSORS7	interleukin 23 receptor	protein-coding
79632	chr16	1149871	1150030	+	0	NA	Intergenic	CpG	-3156	NM_021098	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
236005	chrX	54777051	54777450	+	0	NA	intron (NM_198510, intron 5 of 12)	L1MA2|LINE|L1	21005	NM_198510	347365		NM_198510	ENSG00000102313	ITIH6	ITIH5L|UNQ6369|dJ14O9.1	inter-alpha-trypsin inhibitor heavy chain family member 6	protein-coding
147585	chr20	61719501	61720630	+	0	NA	promoter-TSS (NR_147702)	promoter-TSS (NR_147702)	-317	NR_147702	100128310		NR_147702	ENSG00000179253	LOC100128310	-	uncharacterized LOC100128310	ncRNA
86300	chr16	58632071	58632630	+	0	NA	Intergenic	Intergenic	-2524	NR_049763	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
184669	chr5	107983071	107983630	+	0	NA	intron (NM_001163315, intron 7 of 8)	AluJo|SINE|Alu	-312413	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
127271	chr2	38715351	38716130	+	0	NA	intron (NM_138801, intron 4 of 6)	MIR|SINE|MIR	35621	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
50823	chr12	49096951	49097430	+	0	NA	TTS (NM_001352165)	TTS (NM_001352165)	-2389	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
179278	chr4	176340801	176341250	+	0	NA	Intergenic	Intergenic	21059	NM_021928	60559		NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22|SPC22/23|SPC23|SPC3|YLR066W	signal peptidase complex subunit 3	protein-coding
131431	chr2	96291571	96291730	+	0	NA	intron (NM_014014, intron 17 of 44)	intron (NM_014014, intron 17 of 44)	13896	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
29559	chr10	71397871	71398730	+	0	NA	intron (NM_001171931, intron 1 of 24)	intron (NM_001171931, intron 1 of 24)	1366	NM_001171932	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
58240	chr12	128743801	128744200	+	0	NA	Intergenic	Intergenic	79958	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
171327	chr3	195986951	195987630	+	0	NA	intron (NR_003264, intron 1 of 16)	intron (NR_003264, intron 1 of 16)	2989	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
50992	chr12	49633601	49634130	+	0	NA	intron (NM_001379031, intron 8 of 24)	intron (NM_001379031, intron 8 of 24)	10304	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
45164	chr11	117209651	117210000	+	0	NA	intron (NM_004716, intron 12 of 16)	AluJb|SINE|Alu	-7911	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
193194	chr6	29741151	29741450	+	0	NA	intron (NR_026972, intron 2 of 5).3	intron (NR_026972, intron 2 of 5).3	7749	NR_026972	285830		NM_001003807	ENSG00000214922	HLA-F-AS1	-	HLA-F antisense RNA 1	ncRNA
27946	chr10	42079001	42079950	+	0	NA	Intergenic	Intergenic	288570	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
171243	chr3	195787571	195787830	+	0	NA	exon (NM_001322468, exon 4 of 42)	exon (NM_001322468, exon 4 of 42)	24229	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
139098	chr2	218892051	218894250	+	0	NA	exon (NM_025216, exon 4 of 4)	exon (NM_025216, exon 4 of 4)	12298	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
161729	chr3	44060221	44060480	+	0	NA	Intergenic	Intergenic	-53862	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA
31471	chr10	96515301	96515700	+	0	NA	Intergenic	Intergenic	-1574	NM_012465	7093		NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding
35479	chr11	1500421	1500680	+	0	NA	Intergenic	L2b|LINE|L2	-13771	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
34446	chr10	132427321	132428680	+	0	NA	Intergenic	(CATCAT)n|Simple_repeat|Simple_repeat	-17189	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
184580	chr5	102856951	102857050	+	0	NA	intron (NM_001364582, intron 1 of 24)	intron (NM_001364582, intron 1 of 24)	-8823	NM_138821	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
160976	chr3	37175501	37177380	+	0	NA	promoter-TSS (NM_001348306)	promoter-TSS (NM_001348306)	-80	NM_001348298	9209		NM_006309	ENSG00000093167	LRRFIP2	HUFI-2	LRR binding FLII interacting protein 2	protein-coding
15399	chr1	150232171	150232730	+	0	NA	intron (NM_001280559, intron 1 of 6)	intron (NM_001280559, intron 1 of 6)	2228	NM_001136479	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
11391	chr1	89669051	89669480	+	0	NA	intron (NM_032270, intron 1 of 2)	L1MB1|LINE|L1	36145	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
187182	chr5	140649121	140649380	+	0	NA	intron (NM_006083, intron 2 of 19)	AluSz|SINE|Alu	1406	NR_037428	100500820		NR_037428	ENSG00000284325	MIR3655	-	microRNA 3655	ncRNA
113818	chr19	10604101	10605150	+	0	NA	intron (NM_001145056, intron 1 of 21)	MIRb|SINE|MIR	2170	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
153898	chr22	30301301	30301700	+	0	NA	intron (NM_031937, intron 2 of 8)	MIRb|SINE|MIR	-11995	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
83842	chr16	28870171	28870530	+	0	NA	intron (NM_001145812, intron 5 of 9)	intron (NM_001145812, intron 5 of 9)	6357	NM_015503	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
103452	chr17	78287471	78287830	+	0	NA	Intergenic	AluY|SINE|Alu	-9158	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
236936	chrX	100135351	100135450	+	0	NA	Intergenic	L1PA2|LINE|L1	274873	NM_020766	57526		NM_020766	ENSG00000165194	PCDH19	DEE9|EFMR|EIEE9	protocadherin 19	protein-coding
149220	chr21	25486751	25487050	+	0	NA	Intergenic	AluY|SINE|Alu	-55199	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
128168	chr2	49940801	49941000	+	0	NA	intron (NM_001330083, intron 17 of 17)	intron (NM_001330083, intron 17 of 17)	33303	NM_001320157	9378		NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
148930	chr21	9329701	9330300	+	0	NA	Intergenic	Intergenic	-200239	NR_038329	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
13453	chr1	114492901	114493100	+	0	NA	intron (NM_033020, intron 1 of 18)	L1MB4|LINE|L1	18203	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
59546	chr13	27269251	27269350	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-1530	NM_206827	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
6825	chr1	30999551	30999650	+	0	NA	intron (NM_014676, intron 5 of 21)	AluSx|SINE|Alu	-31363	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
158931	chr3	10114901	10116850	+	0	NA	intron (NM_018462, intron 1 of 2)	CpG	200	NM_018462	55845		NM_018462	ENSG00000254999	BRK1	C3orf10|HSPC300|MDS027|hHBrk1	BRICK1 subunit of SCAR/WAVE actin nucleating complex	protein-coding
179013	chr4	164142251	164142350	+	0	NA	intron (NM_001166373, intron 1 of 7)	L1PA3|LINE|L1	55411	NM_012403	23520		NM_012403		ANP32CP	ANP32C|PP32R1	acidic nuclear phosphoprotein 32 family member C, pseudogene	pseudo
57959	chr12	123902221	123902480	+	0	NA	intron (NM_207437, intron 55 of 77)	intron (NM_207437, intron 55 of 77)	69709	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
159221	chr3	12904571	12904730	+	0	NA	intron (NM_014869, intron 12 of 13)	intron (NM_014869, intron 12 of 13)	-19439	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
125830	chr2	24356271	24356850	+	0	NA	intron (NM_147152, intron 1 of 29)	L1PA8A|LINE|L1	3976	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
173723	chr4	15956001	15956600	+	0	NA	Intergenic	Intergenic	6875	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
14516	chr1	144837121	144837580	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	119179	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
163249	chr3	50278721	50279280	+	0	NA	promoter-TSS (NM_001304385)	promoter-TSS (NM_001304385)	-87	NM_153215	132228		NM_153215	ENSG00000179564	LSMEM2	C3orf45	leucine rich single-pass membrane protein 2	protein-coding
62745	chr13	106565121	106565780	+	0	NA	intron (NM_018011, intron 1 of 3)	L2b|LINE|L2	2687	NM_018011	55082		NM_018011	ENSG00000134884	ARGLU1	-	arginine and glutamate rich 1	protein-coding
124391	chr19	58396301	58397330	+	0	NA	exon (NM_001195135, exon 1 of 1)	exon (NM_001195135, exon 1 of 1)	725	NM_001195135	646862		NM_001195135	ENSG00000269855	RNF225	-	ring finger protein 225	protein-coding
171190	chr3	195689451	195689980	+	0	NA	TTS (NR_003265)	TTS (NR_003265)	1217	NR_122105	440993		NM_001013714		MIR570HG	LINC00969	MIR570 host gene	ncRNA
79106	chr16	200001	200400	+	0	NA	intron (NM_018032, intron 5 of 8)	AluYk2|SINE|Alu	19741	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
39979	chr11	62604821	62605880	+	0	NA	intron (NM_153265, intron 15 of 21)	intron (NM_153265, intron 15 of 21)	-3485	NM_004739	9219		NM_004739	ENSG00000149480	MTA2	MTA1L1|PID	metastasis associated 1 family member 2	protein-coding
150424	chr21	42410951	42411050	+	0	NA	intron (NM_001243467, intron 3 of 11)	(CA)n|Simple_repeat|Simple_repeat	7098	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
99209	chr17	49564421	49564680	+	0	NA	intron (NR_103773, intron 1 of 2)	AluJb|SINE|Alu	9514	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
217770	chr8	33316421	33316880	+	0	NA	Intergenic	AluSx1|SINE|Alu	156496	NM_032664	84750		NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
100220	chr17	59219001	59219430	+	0	NA	Intergenic	AluSz|SINE|Alu	-1296	NM_001165993	284161		NM_182569	ENSG00000153982	GDPD1	GDE4	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding
63600	chr14	20489471	20490000	+	0	NA	Intergenic	Intergenic	-14498	NM_001012975	338879		NM_001012975	ENSG00000182545	RNASE10	RAH1|RNASE9	ribonuclease A family member 10 (inactive)	protein-coding
4378	chr1	20730051	20730650	+	0	NA	intron (NM_001103161, intron 1 of 9)	intron (NM_001103161, intron 1 of 9)	2353	NM_001103160	400745		NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
65006	chr14	38210071	38210230	+	0	NA	exon (NM_001049, exon 3 of 3)	exon (NM_001049, exon 3 of 3)	2246	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
68023	chr14	75144971	75145530	+	0	NA	intron (NM_006827, intron 3 of 4)	intron (NM_006827, intron 3 of 4)	-18202	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
78227	chr15	90654621	90655300	+	0	NA	intron (NR_120372, intron 2 of 3)	intron (NR_120372, intron 2 of 3)	-5274	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
173624	chr4	12334951	12335150	+	0	NA	Intergenic	L1PA3|LINE|L1	111599	NR_125910	101929019		NR_125910	ENSG00000251210	LINC02270	-	long intergenic non-protein coding RNA 2270	ncRNA
161268	chr3	39273401	39273600	+	0	NA	intron (NM_001171174, intron 1 of 1)	intron (NM_001171174, intron 1 of 1)	6536	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
90474	chr17	1390721	1391380	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	9172	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
38417	chr11	45078901	45079300	+	0	NA	Intergenic	Intergenic	-15059	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
25314	chr10	6217221	6217980	+	0	NA	intron (NM_001145443, intron 6 of 14)	intron (NM_001145443, intron 6 of 14)	14668	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
48489	chr12	9828401	9828800	+	0	NA	intron (NM_016523, intron 1 of 5)	(CTGTT)n|Simple_repeat|Simple_repeat	1119	NM_001291822	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
188559	chr5	157024821	157025980	+	0	NA	Intergenic	L2b|LINE|L2	32841	NM_012206	26762		NM_012206	ENSG00000113249	HAVCR1	CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
72629	chr15	38354371	38354550	+	0	NA	3' UTR (NM_152594, exon 7 of 7)	3' UTR (NM_152594, exon 7 of 7)	-99667	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
155544	chr22	38713351	38713700	+	0	NA	intron (NM_004286, intron 2 of 11)	intron (NM_004286, intron 2 of 11)	7581	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
64411	chr14	24176921	24177180	+	0	NA	intron (NM_001048205, intron 7 of 18).2	intron (NM_001048205, intron 7 of 18).2	4970	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
26147	chr10	13890771	13890930	+	0	NA	intron (NM_018027, intron 2 of 24)	intron (NM_018027, intron 2 of 24)	81046	NM_001318337	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
3899	chr1	17119101	17119900	+	0	NA	promoter-TSS (NM_007365)	promoter-TSS (NM_007365)	-49	NM_007365	11240		NM_007365	ENSG00000117115	PADI2	PAD-H19|PAD2|PDI2	peptidyl arginine deiminase 2	protein-coding
176067	chr4	82561601	82562000	+	0	NA	intron (NM_001353454, intron 1 of 7)	CpG	188	NM_001353455	441027		NM_001080506	ENSG00000249242	TMEM150C	TTN3	transmembrane protein 150C	protein-coding
232873	chr9	136824701	136824900	+	0	NA	intron (NM_024718, intron 2 of 14)	intron (NM_024718, intron 2 of 14)	-6157	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
28092	chr10	43383421	43383680	+	0	NA	Intergenic	Intergenic	11906	NM_001184963	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
29517	chr10	70758971	70759800	+	0	NA	intron (NM_139155, intron 21 of 21)	intron (NM_139155, intron 21 of 21)	22981	NR_134534	219793		NM_152710	ENSG00000166220	TBATA	C10orf27|SPATIAL	thymus, brain and testes associated	protein-coding
86860	chr16	67941471	67941630	+	0	NA	intron (NM_000229, intron 5 of 5)	AluJo|SINE|Alu	2570	NM_000229	3931		NM_000229	ENSG00000213398	LCAT	-	lecithin-cholesterol acyltransferase	protein-coding
142553	chr20	5128901	5129450	+	0	NA	intron (NM_003818, intron 1 of 12)	intron (NM_003818, intron 1 of 12)	2167	NM_003818	8760		NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
193574	chr6	30674171	30674930	+	0	NA	Intergenic	AluJb|SINE|Alu	-1497	NM_001164239	8449		NM_003587	ENSG00000204560	DHX16	DBP2|DDX16|NMOAS|PRO2014|PRP8|PRPF2|Prp2	DEAH-box helicase 16	protein-coding
37811	chr11	33011351	33012230	+	0	NA	Intergenic	Intergenic	-4088	NM_001077242	91614		NM_139160	ENSG00000121690	DEPDC7	TR2|dJ85M6.4	DEP domain containing 7	protein-coding
31370	chr10	93813571	93813750	+	0	NA	Intergenic	Intergenic	55724	NM_005097	9211		NM_005097	ENSG00000108231	LGI1	ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099	leucine rich glioma inactivated 1	protein-coding
230040	chr9	127385851	127386150	+	0	NA	intron (NR_104591, intron 24 of 26)	MER63C|DNA|hAT-Blackjack	-11138	NM_001271711	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
164941	chr3	71230051	71230550	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	14777	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
175581	chr4	75661571	75661930	+	0	NA	intron (NM_203505, intron 2 of 11)	intron (NM_203505, intron 2 of 11)	11409	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
185744	chr5	132108621	132108880	+	0	NA	Intergenic	L1PA4|LINE|L1	34961	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
158759	chr3	9390501	9390700	+	0	NA	intron (NR_132781, intron 1 of 3)	L2c|LINE|L2	6023	NR_132781	440944		NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
212821	chr7	130430901	130431300	+	0	NA	intron (NM_001257160, intron 1 of 2)	intron (NM_001257160, intron 1 of 2)	9916	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
169689	chr3	172043371	172043800	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	3054	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
196583	chr6	44176651	44177900	+	0	NA	exon (NM_007058, exon 12 of 23)	exon (NM_007058, exon 12 of 23)	18455	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105473	chr17	83066551	83067050	+	0	NA	Intergenic	Intergenic	-12809	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
167487	chr3	129165271	129166350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4580	NM_001204890	100534599		NM_001204890	ENSG00000261796	ISY1-RAB43	ISY1	ISY1-RAB43 readthrough	protein-coding
104075	chr17	80225871	80226680	+	0	NA	intron (NM_001166348, intron 5 of 16)	intron (NM_001166348, intron 5 of 16)	5848	NM_001166348	284129		NM_173626	ENSG00000181045	SLC26A11	-	solute carrier family 26 member 11	protein-coding
228946	chr9	113379601	113380100	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-2864	NM_001371923	81932		NM_031219	ENSG00000119431	HDHD3	2810435D12Rik|C9orf158	haloacid dehalogenase like hydrolase domain containing 3	protein-coding
144257	chr20	34537801	34538100	+	0	NA	intron (NM_001382366, intron 3 of 3)	intron (NM_001382366, intron 3 of 3)	-8894	NM_181509	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
199780	chr6	125986051	125987500	+	0	NA	intron (NM_001350583, intron 1 of 12)	CpG	235	NM_001031712	60487		NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
37118	chr11	13315851	13316150	+	0	NA	intron (NM_001351815, intron 2 of 17)	intron (NM_001351815, intron 2 of 17)	38210	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
86401	chr16	66734751	66735300	+	0	NA	intron (NM_006141, intron 5 of 12)	intron (NM_006141, intron 5 of 12)	16584	NM_006141	1783		NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding
86895	chr16	68013401	68013800	+	0	NA	3' UTR (NM_001282442, exon 2 of 2)	3' UTR (NM_001282442, exon 2 of 2)	2311	NM_001282442	100131303		NM_001282442	ENSG00000263201	DPEP2NB	-	DPEP2 neighbor	protein-coding
22175	chr1	212284621	212287300	+	0	NA	promoter-TSS (NR_125984)	promoter-TSS (NR_125984)	550	NM_006243	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
52826	chr12	57027171	57028150	+	0	NA	TTS (NM_001256041)	TTS (NM_001256041)	-11131	NR_135164	6866		NM_013251	ENSG00000166863	TAC3	HH10|LncZBTB39|NK3|NKB|NKNB|PRO1155|ZNEUROK1	tachykinin precursor 3	protein-coding
143737	chr20	32355121	32355830	+	0	NA	Intergenic	Intergenic	-2856	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
169560	chr3	170276771	170278380	+	0	NA	intron (NM_002740, intron 8 of 17)	AluYk2|SINE|Alu	55151	NM_002740	5584		NM_002740	ENSG00000163558	PRKCI	DXS1179E|PKCI|nPKC-iota	protein kinase C iota	protein-coding
161296	chr3	39358251	39359500	+	0	NA	Intergenic	Intergenic	-24495	NM_001354798	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
166763	chr3	122299901	122300230	+	0	NA	Intergenic	Intergenic	-25183	NM_005213	1475		NM_005213	ENSG00000121552	CSTA	AREI|PSS4|STF1|STFA	cystatin A	protein-coding
87130	chr16	69106901	69107130	+	0	NA	promoter-TSS (NM_005329)	promoter-TSS (NM_005329)	-525	NM_005329	3038		NM_005329	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
214792	chr7	151164971	151165330	+	0	NA	intron (NM_001098834, intron 1 of 1)	intron (NM_001098834, intron 1 of 1)	2398	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
98096	chr17	45601821	45602400	+	0	NA	promoter-TSS (NR_026901)	promoter-TSS (NR_026901)	-248	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
185643	chr5	131536501	131537250	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	98354	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
24240	chr1	236163771	236164350	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	21521	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
151657	chr22	17036771	17036930	+	0	NA	non-coding (NR_015352, exon 1 of 4)	non-coding (NR_015352, exon 1 of 4)	280	NR_152826	100130418		NR_015352		CECR7	CYCL|SAHL1	cat eye syndrome chromosome region, candidate 7	ncRNA
6527	chr1	28570151	28570450	+	0	NA	intron (NM_017846, intron 6 of 8)	AluSq|SINE|Alu	8522	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	small nucleolar RNA, C/D box 99	snoRNA
153866	chr22	30247971	30248980	+	0	NA	Intergenic	Intergenic	-1716	NM_002309	3976		NM_002309	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	LIF interleukin 6 family cytokine	protein-coding
128196	chr2	53960251	53961080	+	0	NA	intron (NM_014614, intron 1 of 46)	intron (NM_014614, intron 1 of 46)	10328	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
141528	chr2	241271671	241272200	+	0	NA	promoter-TSS (NM_001320966)	promoter-TSS (NM_001320966)	30	NM_001320966	3069		NM_005336	ENSG00000115677	HDLBP	HBP|PRO2900|VGL	high density lipoprotein binding protein	protein-coding
76786	chr15	77015571	77016350	+	0	NA	intron (NM_001321136, intron 2 of 15)	intron (NM_001321136, intron 2 of 15)	20834	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
228690	chr9	107776571	107777100	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-287066	NM_001314052	9314		NM_004235	ENSG00000136826	KLF4	EZF|GKLF	KLF transcription factor 4	protein-coding
43703	chr11	85988751	85989250	+	0	NA	intron (NM_001008660, intron 12 of 19)	intron (NM_001008660, intron 12 of 19)	80084	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
1935	chr1	6492051	6492630	+	0	NA	promoter-TSS (NM_020631)	promoter-TSS (NM_020631)	-673	NM_020631	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
56116	chr12	110746351	110746650	+	0	NA	Intergenic	L2b|LINE|L2	-3609	NM_002710	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
197410	chr6	73519751	73520500	+	0	NA	intron (NM_001402, intron 1 of 7)	intron (NM_001402, intron 1 of 7)	907	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
166664	chr3	120076671	120076830	+	0	NA	intron (NM_001146156, intron 1 of 10)	AluYg6|SINE|Alu	7898	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
169717	chr3	172136071	172136630	+	0	NA	intron (NM_022763, intron 3 of 25)	intron (NM_022763, intron 3 of 25)	95819	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
151907	chr22	18958801	18959200	+	0	NA	Intergenic	Intergenic	-11498	NR_045121	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
225814	chr9	37746901	37747500	+	0	NA	TTS (NM_014907)	TTS (NM_014907)	-6603	NM_001286952	158234		NM_144964	ENSG00000165275	TRMT10B	RG9MTD3|bA3J10.9	tRNA methyltransferase 10B	protein-coding
222483	chr8	140349301	140349500	+	0	NA	intron (NM_001374684, intron 8 of 21)	CpG	108344	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
163027	chr3	49807551	49808480	+	0	NA	intron (NM_003335, intron 20 of 23)	intron (NM_003335, intron 20 of 23)	-1770	NR_049825	100847079		NR_049825	ENSG00000283726	MIR5193	mir-5193	microRNA 5193	ncRNA
91575	chr17	5194871	5195230	+	0	NA	intron (NR_152840, intron 1 of 5)	AluJr|SINE|Alu	3043	NR_152840	100130950		NR_034082	ENSG00000261879	ZNF594-DT	-	ZNF594 divergent transcript	ncRNA
66777	chr14	64636421	64636940	+	0	NA	Intergenic	Intergenic	-67744	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
181426	chr5	40823501	40823900	+	0	NA	Intergenic	LTR41|LTR|ERVL	9035	NR_002583	619564		NR_002583	ENSG00000212296	SNORD72	HBII-240	small nucleolar RNA, C/D box 72	snoRNA
179319	chr4	180394401	180394800	+	0	NA	Intergenic	Intergenic	764549	NR_033918	728081		NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
11856	chr1	92990521	92991350	+	0	NA	Intergenic	Intergenic	-29413	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
139562	chr2	224929951	224930540	+	0	NA	intron (NM_001363762, intron 2 of 55)	(AAAG)n|Simple_repeat|Simple_repeat	16804	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
209778	chr7	87344851	87346050	+	0	NA	promoter-TSS (NM_001243745)	promoter-TSS (NM_001243745)	42	NR_015381	11257		NM_007233	ENSG00000182165	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1|TP53LC12	TP53 target 1	ncRNA
50699	chr12	48921071	48921550	+	0	NA	TTS (NM_001143781)	TTS (NM_001143781)	3678	NM_001143781	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
52051	chr12	54019101	54019300	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	2312	NM_014620	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
186375	chr5	134925171	134925780	+	0	NA	intron (NM_032151, intron 2 of 3)	intron (NM_032151, intron 2 of 3)	20344	NM_032151	84105		NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
120093	chr19	42129421	42129850	+	0	NA	intron (NM_001247994, intron 1 of 13)	intron (NM_001247994, intron 1 of 13)	2811	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
147654	chr20	62227771	62228300	+	0	NA	promoter-TSS (NR_160555)	promoter-TSS (NR_160555)	-208	NR_160555	105369209		NR_160555	ENSG00000130703	LOC105369209	-	uncharacterized LOC105369209	ncRNA
9538	chr1	51506051	51506150	+	0	NA	intron (NM_001981, intron 1 of 24)	AluSx1|SINE|Alu	13166	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
239251	chrY	13363001	13363200	+	0	NA	intron (NR_047646, intron 9 of 26)	AluSx4|SINE|Alu	-116077	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
186840	chr5	139446071	139446230	+	0	NA	Intergenic	Intergenic	-6625	NM_152686	202052		NM_152686	ENSG00000170464	DNAJC18	-	DnaJ heat shock protein family (Hsp40) member C18	protein-coding
122395	chr19	49429271	49429650	+	0	NA	TTS (NM_020309)	TTS (NM_020309)	4072	NM_001195256	100507003		NM_001195256	ENSG00000261949	GFY	Goofy	golgi associated olfactory signaling regulator	protein-coding
201743	chr6	149924371	149924530	+	0	NA	Intergenic	Intergenic	-1329	NR_130110	353091		NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
6575	chr1	28749101	28749430	+	0	NA	intron (NM_016258, intron 4 of 4)	AluY|SINE|Alu	12325	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
116909	chr19	18784051	18784400	+	0	NA	exon (NM_000095, exon 17 of 19)	exon (NM_000095, exon 17 of 19)	7080	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
103920	chr17	79823701	79824180	+	0	NA	intron (NR_146504, intron 2 of 2)	AluSx|SINE|Alu	488	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
136028	chr2	172459871	172460400	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	5887	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
79288	chr16	540151	540400	+	0	NA	intron (NM_005632, intron 3 of 13)	CpG	-3002	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
138744	chr2	214807551	214808600	+	0	NA	intron (NR_104212, intron 1 of 9)	intron (NR_104212, intron 1 of 9)	1608	NM_001282549	580		NM_000465	ENSG00000138376	BARD1	-	BRCA1 associated RING domain 1	protein-coding
54174	chr12	77031901	77032100	+	0	NA	intron (NM_203394, intron 9 of 12)	intron (NM_203394, intron 9 of 12)	33569	NM_203394	144455		NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
68393	chr14	80939851	80940480	+	0	NA	intron (NR_157142, intron 1 of 24)	intron (NR_157142, intron 1 of 24)	1573	NR_157142	145508		NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding
226567	chr9	72464901	72465150	+	0	NA	Intergenic	Intergenic	-56583	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
66257	chr14	61359971	61360130	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	38607	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
147904	chr20	62893871	62894230	+	0	NA	exon (NM_033081, exon 12 of 16)	exon (NM_033081, exon 12 of 16)	-11147	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
76053	chr15	72315701	72316300	+	0	NA	intron (NM_052840, intron 1 of 12)	intron (NM_052840, intron 1 of 12)	3946	NM_001172684	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
152182	chr22	20100201	20102100	+	0	NA	intron (NM_022720, intron 9 of 13)	MER21C|LTR|ERVL	13601	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
74685	chr15	62071501	62071950	+	0	NA	TTS (NM_207322)	TTS (NM_207322)	4748	NM_207322	145741		NM_207322	ENSG00000198535	C2CD4A	FAM148A|NLF1	C2 calcium dependent domain containing 4A	protein-coding
79939	chr16	1758401	1759050	+	0	NA	intron (NM_001318852, intron 9 of 31)	intron (NM_001318852, intron 9 of 31)	12984	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
116659	chr19	18346101	18346850	+	0	NA	intron (NM_001329471, intron 2 of 4)	intron (NM_001329471, intron 2 of 4)	5877	NM_017712	54858		NM_017712	ENSG00000130517	PGPEP1	PAP-I|PGI|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
70351	chr14	101869521	101869980	+	0	NA	intron (NM_178587, intron 2 of 11)	AluJb|SINE|Alu	59887	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
129885	chr2	73115251	73115550	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2452	NM_015470	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
190796	chr6	834251	834530	+	0	NA	Intergenic	(TCCT)n|Simple_repeat|Simple_repeat	-34108	NR_110853	101927691		NR_110853		LOC101927691	-	uncharacterized LOC101927691	ncRNA
146143	chr20	48664471	48665200	+	0	NA	intron (NM_020820, intron 15 of 39)	CpG	163164	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138643	chr2	210477621	210478180	+	0	NA	intron (NM_001122633, intron 1 of 38)	intron (NM_001122633, intron 1 of 38)	215	NM_001369257	1373		NM_001875	ENSG00000021826	CPS1	CPSASE1|GATD6|PHN	carbamoyl-phosphate synthase 1	protein-coding
195869	chr6	41548681	41549530	+	0	NA	promoter-TSS (NR_126415)	promoter-TSS (NR_126415)	-484	NR_126415	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
216002	chr8	8918851	8919150	+	0	NA	Intergenic	L1MC3|LINE|L1	-25370	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
97649	chr17	44201801	44202000	+	0	NA	Intergenic	Intergenic	-2016	NM_001382308	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
212327	chr7	127387451	127388030	+	0	NA	intron (NM_176814, intron 2 of 5)	AluJb|SINE|Alu	4968	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
85074	chr16	32619271	32619430	+	0	NA	Intergenic	Intergenic	-30793	NR_158162	105369266		NR_158162		LOC105369266	-	uncharacterized LOC105369266	ncRNA
163276	chr3	50311621	50312300	+	0	NA	intron (NM_153281, intron 1 of 5)	SVA_D|Retroposon|SVA	421	NM_153281	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
15029	chr1	148352071	148352700	+	0	NA	Intergenic	Intergenic	10148	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
11021	chr1	84854171	84854930	+	0	NA	intron (NM_012152, intron 2 of 2)	intron (NM_012152, intron 2 of 2)	38656	NM_012152	23566		NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
201644	chr6	149473351	149474050	+	0	NA	intron (NM_207360, intron 2 of 5)	intron (NM_207360, intron 2 of 5)	11314	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
212243	chr7	121389201	121389400	+	0	NA	intron (NM_001040020, intron 1 of 9)	intron (NM_001040020, intron 1 of 9)	7008	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
47388	chr12	2783371	2784310	+	0	NA	intron (NR_146317, intron 2 of 3)	AluSx1|SINE|Alu	-11130	NM_002014	2288		NM_002014	ENSG00000004478	FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	FKBP prolyl isomerase 4	protein-coding
147753	chr20	62413271	62413430	+	0	NA	intron (NM_080833, intron 11 of 13)	intron (NM_080833, intron 11 of 13)	-6067	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
139475	chr2	224038271	224038800	+	0	NA	5' UTR (NM_001136530, exon 1 of 9)	5' UTR (NM_001136530, exon 1 of 9)	105	NM_001136530	5270		NM_006216	ENSG00000135919	SERPINE2	GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI	serpin family E member 2	protein-coding
75727	chr15	68209771	68210200	+	0	NA	intron (NM_017882, intron 5 of 6)	intron (NM_017882, intron 5 of 6)	-3875	NM_001286694	91860		NM_033429	ENSG00000129007	CALML4	NY-BR-20	calmodulin like 4	protein-coding
8780	chr1	42818371	42818530	+	0	NA	intron (NM_001017922, intron 1 of 11)	L1MB2|LINE|L1	-1053	NM_199342	374969		NM_199342	ENSG00000177868	SVBP	CCDC23|NEDAHM	small vasohibin binding protein	protein-coding
7622	chr1	35541101	35541500	+	0	NA	intron (NM_024874, intron 2 of 20)	L2a|LINE|L2	16103	NM_024874	79932		NM_024874	ENSG00000142687	KIAA0319L	AAVR|AAVRL	KIAA0319 like	protein-coding
192467	chr6	24925071	24925600	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	10625	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
47512	chr12	4119101	4119900	+	0	NA	Intergenic	Intergenic	-154262	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
207675	chr7	45110051	45111100	+	0	NA	intron (NM_199122, intron 1 of 8)	AluY|SINE|Alu	1122	NM_004749	9238		NM_004749	ENSG00000136270	TBRG4	CPR2|FASTKD4	transforming growth factor beta regulator 4	protein-coding
230454	chr9	128189871	128190230	+	0	NA	intron (NM_001257976, intron 2 of 15)	MIR3|SINE|MIR	1522	NM_001257976	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
2814	chr1	11015671	11016180	+	0	NA	intron (NM_007375, intron 2 of 5)	AluSg4|SINE|Alu	3271	NM_007375	23435		NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding
229513	chr9	122405871	122406430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	30848	NM_001271165	5742		NM_000962	ENSG00000095303	PTGS1	COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS	prostaglandin-endoperoxide synthase 1	protein-coding
226710	chr9	75138171	75139180	+	0	NA	intron (NM_012383, intron 8 of 9)	MER33|DNA|hAT-Charlie	50161	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
36997	chr11	11931471	11931700	+	0	NA	intron (NM_001372100, intron 15 of 28)	intron (NM_001372100, intron 15 of 28)	77054	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
160949	chr3	36917971	36918750	+	0	NA	intron (NM_001329998, intron 1 of 23)	L1MB2|LINE|L1	26694	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
214547	chr7	150525471	150526080	+	0	NA	Intergenic	L1M3|LINE|L1	10903	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
191594	chr6	12044601	12045200	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	32588	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
3641	chr1	16390121	16390400	+	0	NA	intron (NR_073501, intron 2 of 4)	intron (NR_073501, intron 2 of 4)	23018	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
98326	chr17	46262851	46263150	+	0	NA	Intergenic	AluJb|SINE|Alu	-32131	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
95303	chr17	35542401	35542600	+	0	NA	Intergenic	AluJb|SINE|Alu	-4639	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
212570	chr7	128903721	128904050	+	0	NA	intron (NM_199349, intron 6 of 20)	intron (NM_199349, intron 6 of 20)	6824	NM_001366122	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
26349	chr10	15270351	15270450	+	0	NA	intron (NM_001010924, intron 3 of 7)	L1PA5|LINE|L1	100889	NM_001010924	221061		NM_001010924	ENSG00000148468	FAM171A1	APCN|C10orf38	family with sequence similarity 171 member A1	protein-coding
128072	chr2	47866001	47866750	+	0	NA	intron (NM_001190274, intron 1 of 22)	MIR3|SINE|MIR	22344	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
102071	chr17	74936971	74937300	+	0	NA	intron (NM_001272005, intron 1 of 6)	AluJb|SINE|Alu	1237	NM_001272005	347741		NM_178233	ENSG00000182938	OTOP3	-	otopetrin 3	protein-coding
88542	chr16	85447071	85447850	+	0	NA	Intergenic	MIR|SINE|MIR	-141135	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
49005	chr12	14218051	14218550	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	-147332	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
75915	chr15	70090471	70091100	+	0	NA	intron (NM_001282982, intron 2 of 17)	intron (NM_001282982, intron 2 of 17)	4004	NM_001282982	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
189141	chr5	171313371	171313700	+	0	NA	Intergenic	Intergenic	4287	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
124436	chr19	58480921	58481380	+	0	NA	TTS (NM_017908)	TTS (NM_017908)	3971	NM_001304453	55663		NM_017908	ENSG00000083838	ZNF446	ZKSCAN20|ZSCAN30|ZSCAN52	zinc finger protein 446	protein-coding
64150	chr14	22888671	22889650	+	0	NA	Intergenic	AluSg4|SINE|Alu	5938	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
33244	chr10	114307071	114307430	+	0	NA	intron (NM_032550, intron 10 of 18)	intron (NM_032550, intron 10 of 18)	67636	NM_001320804	340706		NM_198496	ENSG00000165816	VWA2	AMACO|CCSP-2|CCSP2|NET42	von Willebrand factor A domain containing 2	protein-coding
87721	chr16	75095571	75096130	+	0	NA	intron (NM_032268, intron 2 of 4)	intron (NM_032268, intron 2 of 4)	20922	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
225200	chr9	34074251	34074950	+	0	NA	Intergenic	L1ME3G|LINE|L1	-25401	NM_001370059	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
90732	chr17	2022051	2022150	+	0	NA	intron (NM_178568, intron 1 of 1)	AluSz6|SINE|Alu	3234	NM_178568	146760		NM_178568	ENSG00000185924	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor like 1	protein-coding
88054	chr16	81455621	81455880	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	10580	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
126734	chr2	30194871	30195030	+	0	NA	Intergenic	Intergenic	7516	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
195735	chr6	39302851	39303800	+	0	NA	intron (NM_001135111, intron 4 of 5)	intron (NM_001135111, intron 4 of 5)	11094	NM_031460	89822		NM_031460	ENSG00000124780	KCNK17	K2p17.1|TALK-2|TALK2|TASK-4|TASK4	potassium two pore domain channel subfamily K member 17	protein-coding
214825	chr7	151242951	151244690	+	0	NA	intron (NM_001003802, intron 3 of 13)	intron (NM_001003802, intron 3 of 13)	4874	NM_001003801	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
175306	chr4	68304921	68305180	+	0	NA	Intergenic	Intergenic	45040	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
199852	chr6	127774471	127774800	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	80553	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
146392	chr20	49292351	49292650	+	0	NA	Intergenic	MIRb|SINE|MIR	11817	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
108727	chr18	77089921	77090180	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	42733	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
238729	chrX	154220951	154221250	+	0	NA	intron (NM_000513, intron 1 of 5).2	intron (NM_000513, intron 1 of 5).2	1344	NM_001330067	101060233		NM_001330067	ENSG00000269433	OPN1MW3	GCP|GOP|OPN1MW|OPN1MW2	opsin 1, medium wave sensitive 3	protein-coding
173170	chr4	6699151	6699800	+	0	NA	Intergenic	Intergenic	5597	NM_005980	6286		NM_005980	ENSG00000163993	S100P	MIG9	S100 calcium binding protein P	protein-coding
80785	chr16	3216321	3216580	+	0	NA	TTS (NR_002169)	TTS (NR_002169)	888	NR_002169	26184		NR_002169	ENSG00000203581	OR1F2P	OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91	olfactory receptor family 1 subfamily F member 2 pseudogene	pseudo
162945	chr3	49529671	49529830	+	0	NA	intron (NM_001177638, intron 3 of 3)	intron (NM_001177638, intron 3 of 3)	24616	NR_038866	100132677		NR_038866	ENSG00000226913	BSN-DT	BSN-AS2	BSN divergent transcript	ncRNA
18666	chr1	167110351	167110750	+	0	NA	intron (NM_001080426, intron 2 of 5)	L1PBa|LINE|L1	16475	NM_001080426	92235		NM_001080426	ENSG00000198842	STYXL2	DUSP27	serine/threonine/tyrosine interacting like 2	protein-coding
225081	chr9	33297151	33297250	+	0	NA	intron (NM_147134, intron 2 of 15)	L3|LINE|CR1	6684	NM_147134	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
237171	chrX	107676751	107677330	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	39468	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
16574	chr1	155004721	155005950	+	0	NA	intron (NM_001377455, intron 2 of 3)	intron (NM_001377455, intron 2 of 3)	2533	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
70896	chr14	103918701	103918900	+	0	NA	intron (NM_004894, intron 1 of 3)	AluY|SINE|Alu	2729	NM_001127393	9556		NM_004894	ENSG00000156411	ATP5MJ	6.8PL|ATP5MPL|C14orf2|MLQ|MP68|PLPM	ATP synthase membrane subunit j	protein-coding
69799	chr14	99198551	99198880	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	73482	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
40597	chr11	64566471	64567050	+	0	NA	intron (NM_001307985, intron 6 of 7)	intron (NM_001307985, intron 6 of 7)	10819	NM_001307985	55867		NM_018484	ENSG00000168065	SLC22A11	OAT4|hOAT4	solute carrier family 22 member 11	protein-coding
86529	chr16	67164571	67165030	+	0	NA	promoter-TSS (NM_001374675)	promoter-TSS (NM_001374675)	55	NM_001374675	3299		NM_001538	ENSG00000102878	HSF4	CTM|CTRCT5	heat shock transcription factor 4	protein-coding
28322	chr10	46294821	46295080	+	0	NA	intron (NM_001278688, intron 3 of 16)	intron (NM_001278688, intron 3 of 16)	7953	NM_001278688	195977		NM_001278688	ENSG00000274209	ANTXRL	-	ANTXR like	protein-coding
21038	chr1	203036371	203036530	+	0	NA	intron (NM_001304332, intron 1 of 28)	intron (NM_001304332, intron 1 of 28)	9959	NM_001304332	8497		NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding
20736	chr1	200905221	200906380	+	0	NA	intron (NM_018265, intron 5 of 9)	intron (NM_018265, intron 5 of 9)	10900	NM_001367290	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
63479	chr13	114155401	114156880	+	0	NA	Intergenic	Intergenic	-23517	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
120399	chr19	43753501	43756950	+	0	NA	promoter-TSS (NM_019108)	promoter-TSS (NM_019108)	-263	NM_019108	56006		NM_019108	ENSG00000105771	SMG9	C19orf61|F17127_1|HBMS|NEDITPO	SMG9 nonsense mediated mRNA decay factor	protein-coding
87883	chr16	78437451	78437550	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	337846	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19293	chr1	172867351	172867800	+	0	NA	Intergenic	Intergenic	183366	NM_005092	8995		NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	TNF superfamily member 18	protein-coding
228979	chr9	113542501	113542700	+	0	NA	TTS (NM_017790)	TTS (NM_017790)	5989	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
217123	chr8	25185471	25185780	+	0	NA	intron (NM_024940, intron 1 of 51)	intron (NM_024940, intron 1 of 51)	936	NM_024940	80005		NM_024940	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
206248	chr7	29208321	29208650	+	0	NA	intron (NR_120522, intron 1 of 2)	intron (NR_120522, intron 1 of 2)	485	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
192838	chr6	27142721	27142980	+	0	NA	intron (NM_080593, intron 1 of 1)	AluSx4|SINE|Alu	3568	NM_003495	8294		NM_003495	ENSG00000276180	H4C9	H4-16|H4/m|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4FM|H4M|HIST1H4I|TEBIVANED4|TEVANED4	H4 clustered histone 9	protein-coding
43226	chr11	75442421	75442680	+	0	NA	exon (NM_001351168, exon 13 of 18)	exon (NM_001351168, exon 13 of 18)	9777	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
159843	chr3	16508621	16509130	+	0	NA	intron (NM_015150, intron 1 of 9)	MER3|DNA|hAT-Charlie	4824	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
231627	chr9	131586901	131587480	+	0	NA	intron (NM_001377935, intron 22 of 26)	intron (NM_001377935, intron 22 of 26)	41667	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
124897	chr2	8457081	8458250	+	0	NA	Intergenic	Intergenic	126127	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
101629	chr17	68213251	68213550	+	0	NA	intron (NM_001346471, intron 1 of 6)	intron (NM_001346471, intron 1 of 6)	7271	NM_001346472	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
160588	chr3	31218121	31218380	+	0	NA	Intergenic	MIRb|SINE|MIR	-56463	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
151878	chr22	18742851	18742950	+	0	NA	intron (NR_165635, intron 4 of 11)	L1MB7|LINE|L1	8965	NR_136561	642643		NR_136561	ENSG00000182824	FAM230E	LINC01662	family with sequence similarity 230 member E	ncRNA
190768	chr6	493851	493950	+	0	NA	intron (NM_018303, intron 25 of 27)	intron (NM_018303, intron 25 of 27)	102148	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
92910	chr17	16489721	16490180	+	0	NA	intron (NM_001113567, intron 1 of 3)	intron (NM_001113567, intron 1 of 3)	2243	NM_001113567	388341		NM_207387	ENSG00000181350	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
126633	chr2	28813071	28813530	+	0	NA	intron (NM_001142634, intron 1 of 6)	Charlie16a|DNA|hAT-Charlie	2466	NM_001142634	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
71330	chr14	105416051	105416350	+	0	NA	Intergenic	AluJb|SINE|Alu	3539	NR_125384	100507437		NR_125384	ENSG00000251602	MTA1-DT	-	MTA1 divergent transcript	ncRNA
15197	chr1	149228871	149229330	+	0	NA	Intergenic	Intergenic	-27954	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
6877	chr1	31299371	31299530	+	0	NA	intron (NM_001282566, intron 1 of 6)	LTR67B|LTR|ERVL	2418	NM_016505	51538		NM_016505	ENSG00000121766	ZCCHC17	HSPC251|PS1D|pNO40	zinc finger CCHC-type containing 17	protein-coding
205557	chr7	20598521	20598980	+	0	NA	Intergenic	Intergenic	-16917	NM_001163941	340273		NM_178559	ENSG00000004846	ABCB5	ABCB5alpha|ABCB5beta|EST422562	ATP binding cassette subfamily B member 5	protein-coding
135559	chr2	165293371	165294180	+	0	NA	promoter-TSS (NM_021007)	promoter-TSS (NM_021007)	-280	NM_021007	6326		NM_021007	ENSG00000136531	SCN2A	BFIC3|BFIS3|BFNIS|DEE11|EA9|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2	sodium voltage-gated channel alpha subunit 2	protein-coding
141739	chr2	241878051	241878780	+	0	NA	Intergenic	Intergenic	-2948	NR_110220	101927289		NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
90536	chr17	1486701	1487500	+	0	NA	intron (NM_001080779, intron 1 of 31)	CpG	-1340	NM_001080950	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
37242	chr11	14577351	14579380	+	0	NA	intron (NM_148976, intron 2 of 10)	intron (NM_148976, intron 2 of 10)	-57920	NM_001143937	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
223461	chr8	143996551	143997180	+	0	NA	Intergenic	Intergenic	6807	NM_000837	2907		NM_000837	ENSG00000178719	GRINA	HNRGW|LFG1|NMDARA1|TMBIM3	glutamate ionotropic receptor NMDA type subunit associated protein 1	protein-coding
4603	chr1	22088071	22088500	+	0	NA	intron (NM_001791, intron 5 of 5)	intron (NM_001791, intron 5 of 5)	35576	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
97341	chr17	43280451	43280630	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2372	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
135385	chr2	160487251	160487730	+	0	NA	intron (NM_016836, intron 1 of 13)	L2b|LINE|L2	6317	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
88746	chr16	86510471	86510830	+	0	NA	exon (NM_001451, exon 1 of 2)	exon (NM_001451, exon 1 of 2)	123	NM_001451	2294		NM_001451	ENSG00000103241	FOXF1	ACDMPV|FKHL5|FREAC1	forkhead box F1	protein-coding
209495	chr7	76728801	76729050	+	0	NA	Intergenic	L1PA3|LINE|L1	-101622	NM_152992	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
222158	chr8	132761821	132762180	+	0	NA	intron (NM_001382397, intron 1 of 10)	MLT1F2|LTR|ERVL-MaLR	-1418	NM_001382401	137835		NM_144649	ENSG00000165071	TMEM71	-	transmembrane protein 71	protein-coding
137695	chr2	197489421	197490280	+	0	NA	intron (NM_199440, intron 8 of 11)	AluJr|SINE|Alu	-2947	NR_132788	106635540		NR_132788		SNORA105B	-	small nucleolar RNA, H/ACA box 105B	snoRNA
162671	chr3	48924701	48924900	+	0	NA	non-coding (NR_146084, exon 3 of 17)	non-coding (NR_146084, exon 3 of 17)	-5415	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
223790	chr8	144689071	144689700	+	0	NA	Intergenic	(TTTTGT)n|Simple_repeat|Simple_repeat	-3539	NM_001308208	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
91069	chr17	3034751	3034850	+	0	NA	3' UTR (NM_015085, exon 25 of 25)	3' UTR (NM_015085, exon 25 of 25)	28807	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
95061	chr17	32683671	32683950	+	0	NA	intron (NM_015194, intron 16 of 21)	L1PA2|LINE|L1	193314	NM_015194	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
106408	chr18	13471421	13471680	+	0	NA	intron (NM_001378099, intron 4 of 6)	MER5A|DNA|hAT-Charlie	11603	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
198573	chr6	107132451	107132630	+	0	NA	Intergenic	Intergenic	-17025	NM_001367314	57673		NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
50391	chr12	47272271	47272630	+	0	NA	Intergenic	Intergenic	34949	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
31895	chr10	100338251	100339100	+	0	NA	Intergenic	Intergenic	-8447	NM_016112	9033		NM_016112	ENSG00000107593	PKD2L1	PCL|PKD2L|PKDL|TRPP3	polycystin 2 like 1, transient receptor potential cation channel	protein-coding
31401	chr10	95294951	95295650	+	0	NA	Intergenic	Intergenic	-4297	NM_020992	9124		NM_020992	ENSG00000107438	PDLIM1	CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1	PDZ and LIM domain 1	protein-coding
35409	chr11	1394871	1395700	+	0	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	5351	NM_003957	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
215163	chr7	155648801	155649000	+	0	NA	intron (NM_053043, intron 1 of 17)	L1M4|LINE|L1	4239	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
161029	chr3	37991751	37992200	+	0	NA	intron (NM_001385038, intron 2 of 20)	intron (NM_001385038, intron 2 of 20)	1189	NM_001385038	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
9168	chr1	45587321	45587530	+	0	NA	intron (NM_001195193, intron 1 of 12)	AluSx|SINE|Alu	3384	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
139798	chr2	230317471	230317830	+	0	NA	Intergenic	Intergenic	-9521	NM_001308163	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
221123	chr8	118109721	118110150	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	1891	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
98113	chr17	45640271	45641180	+	0	NA	non-coding (NR_138257, exon 6 of 6)	non-coding (NR_138257, exon 6 of 6)	18817	NM_001303016	104909134		NM_001256299	ENSG00000263715	LINC02210-CRHR1	CRHR1-IT1-CRHR1|MGC57346-CRHR1	LINC02210-CRHR1 readthrough	protein-coding
170459	chr3	185920221	185921000	+	0	NA	intron (NM_001243879, intron 5 of 7)	AluSx|SINE|Alu	17404	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
20532	chr1	198689321	198690100	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	50670	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
153909	chr22	30312101	30312400	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	14691	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
136137	chr2	174059571	174059730	+	0	NA	Intergenic	MER74B|LTR|ERVL	34370	NR_136175	100128905		NR_136175	ENSG00000260868	LINC01960	-	long intergenic non-protein coding RNA 1960	ncRNA
206139	chr7	27742201	27742650	+	0	NA	intron (NM_006024, intron 1 of 16)	LTR5_Hs|LTR|ERVK	2330	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
148637	chr21	5874951	5876250	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	97790	NM_017445	54145		NM_017445	ENSG00000234289	H2BC12L	H2B/s|H2BFS|H2BS1	H2B clustered histone 12 like	protein-coding
182186	chr5	56803571	56803730	+	0	NA	Intergenic	Intergenic	-11899	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
56093	chr12	110690921	110691400	+	0	NA	Intergenic	AluY|SINE|Alu	-1383	NM_001256413	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
120520	chr19	44849151	44849450	+	0	NA	intron (NM_002856, intron 1 of 5)	intron (NM_002856, intron 1 of 5)	3003	NM_002856	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
86370	chr16	66559901	66560280	+	0	NA	intron (NM_001204099, intron 2 of 3)	L2b|LINE|L2	-6349	NM_181268	113540		NM_052999	ENSG00000089505	CMTM1	CKLFH|CKLFH1|CKLFSF1	CKLF like MARVEL transmembrane domain containing 1	protein-coding
236705	chrX	77878501	77879130	+	0	NA	intron (NM_032121, intron 1 of 9)	AluSq|SINE|Alu	16620	NM_001367916	84061		NM_032121	ENSG00000102158	MAGT1	CDG1CC|IAP|MRX95|OST3B|PRO0756|SLC58A1|XMEN|bA217H1.1	magnesium transporter 1	protein-coding
31860	chr10	100009471	100010930	+	0	NA	promoter-TSS (NM_015221)	promoter-TSS (NM_015221)	-253	NM_015221	23268		NM_015221	ENSG00000107554	DNMBP	ARHGEF36|CTRCT48|TUBA	dynamin binding protein	protein-coding
72091	chr15	28916521	28916780	+	0	NA	intron (NM_001379685, intron 2 of 15)	L1ME3G|LINE|L1	-4987	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
70659	chr14	103056171	103056530	+	0	NA	intron (NM_006035, intron 1 of 36)	intron (NM_006035, intron 1 of 36)	1199	NM_006035	9578		NM_006035	ENSG00000198752	CDC42BPB	CHOCNS|MRCKB	CDC42 binding protein kinase beta	protein-coding
153659	chr22	28815171	28815330	+	0	NA	Intergenic	Intergenic	-14678	NM_005080	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
125440	chr2	12008471	12008880	+	0	NA	intron (NR_110196, intron 2 of 5)	MLT1B|LTR|ERVL-MaLR	1559	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
229132	chr9	114472971	114473130	+	0	NA	intron (NM_015404, intron 2 of 11)	intron (NM_015404, intron 2 of 11)	30165	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
139766	chr2	230067901	230069180	+	0	NA	intron (NM_152527, intron 1 of 4)	CpG	384	NM_152527	151473		NM_152527	ENSG00000163053	SLC16A14	MCT14	solute carrier family 16 member 14	protein-coding
176048	chr4	82410701	82411100	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	19325	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
151950	chr22	19124001	19124200	+	0	NA	Intergenic	MER4D1|LTR|ERV1	-1646	NM_001173533	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
178724	chr4	152807251	152807800	+	0	NA	intron (NM_001287432, intron 2 of 9)	L1ME1|LINE|L1	27571	NM_001025595	27236		NM_014447	ENSG00000164144	ARFIP1	HSU52521	ADP ribosylation factor interacting protein 1	protein-coding
172455	chr4	1985971	1986130	+	0	NA	TTS (NR_030641)	TTS (NR_030641)	427	NR_030641	100126332		NR_030641	ENSG00000284587	MIR943	MIRN943|hsa-mir-943	microRNA 943	ncRNA
200642	chr6	136967851	136968350	+	0	NA	Intergenic	Intergenic	25131	NR_027994	100294720		NR_027994	ENSG00000225391	NHEG1	-	neuroblastoma highly expressed DDX5 stabilizing lncRNA 1	ncRNA
107191	chr18	35756501	35756730	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	148311	NR_029616	406963		NR_029616	ENSG00000207797	MIR187	MIRN187|miR-187|miRNA187	microRNA 187	ncRNA
83211	chr16	23640501	23642150	+	0	NA	promoter-TSS (NM_001199011)	promoter-TSS (NM_001199011)	-15	NM_024675	79728		NM_024675	ENSG00000083093	PALB2	BROVCA5|FANCN|PNCA3	partner and localizer of BRCA2	protein-coding
73036	chr15	40845771	40846450	+	0	NA	intron (NM_181642, intron 2 of 10)	intron (NM_181642, intron 2 of 10)	-1586	NR_146466	102724362		NR_146466	ENSG00000261183	SPINT1-AS1	-	SPINT1 antisense RNA 1	ncRNA
235215	chrX	41362851	41363530	+	0	NA	intron (NR_126093, intron 18 of 18)	AluSx1|SINE|Alu	29024	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
89165	chr16	88539201	88539400	+	0	NA	Intergenic	Intergenic	-8247	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
161247	chr3	39235901	39236100	+	0	NA	Intergenic	AluJb|SINE|Alu	-43405	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
228997	chr9	113578221	113579860	+	0	NA	intron (NM_001351526, intron 2 of 8)	intron (NM_001351526, intron 2 of 8)	-1888	NM_001282922	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
144081	chr20	33718021	33718280	+	0	NA	intron (NM_183397, intron 1 of 2)	intron (NM_183397, intron 1 of 2)	2160	NM_007238	11264		NM_007238	ENSG00000101417	PXMP4	PMP24	peroxisomal membrane protein 4	protein-coding
199919	chr6	127880471	127881230	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	20231	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
161323	chr3	39415071	39415630	+	0	NA	Intergenic	AluSx|SINE|Alu	4296	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
120377	chr19	43634801	43635550	+	0	NA	intron (NM_145296, intron 1 of 8)	intron (NM_145296, intron 1 of 8)	4675	NM_145296	199731		NM_145296	ENSG00000105767	CADM4	IGSF4C|NECL4|Necl-4|TSLL2|synCAM4	cell adhesion molecule 4	protein-coding
141601	chr2	241640571	241640930	+	0	NA	intron (NM_013325, intron 1 of 12)	L2a|LINE|L2	3057	NM_013325	23192		NM_013325	ENSG00000168397	ATG4B	APG4B|AUTL1|HsAPG4B	autophagy related 4B cysteine peptidase	protein-coding
5593	chr1	26034571	26037200	+	0	NA	3' UTR (NM_004455, exon 11 of 11)	3' UTR (NM_004455, exon 11 of 11)	10233	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
169332	chr3	159989951	159990730	+	0	NA	intron (NM_001354583, intron 2 of 5)	intron (NM_001354583, intron 2 of 5)	1505	NM_001354582	3592		NM_000882	ENSG00000168811	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
151600	chr22	11698521	11698830	+	0	NA	Intergenic	Intergenic	-198731	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
124879	chr2	8324471	8324980	+	0	NA	intron (NR_152741, intron 1 of 9)	intron (NR_152741, intron 1 of 9)	3694	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
89190	chr16	88572051	88572550	+	0	NA	intron (NM_144604, intron 1 of 17)	AluSx3|SINE|Alu	1897	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
154080	chr22	30822371	30822930	+	0	NA	exon (NM_001282741, exon 1 of 13)	exon (NM_001282741, exon 1 of 13)	134	NM_001282741	23762		NM_030758	ENSG00000184792	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
75630	chr15	67175071	67175230	+	0	NA	intron (NM_001145104, intron 3 of 6)	intron (NM_001145104, intron 3 of 6)	8995	NM_001145104	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
8013	chr1	38011371	38011530	+	0	NA	Intergenic	MIRc|SINE|MIR	-1284	NM_016037	51118		NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11 small subunit processome component	protein-coding
231452	chr9	131272301	131272530	+	0	NA	intron (NM_033387, intron 1 of 1)	MER20|DNA|hAT-Charlie	4095	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
190592	chr5	181102221	181102800	+	0	NA	Intergenic	Intergenic	22794	NM_001258283	26693		NM_001258283	ENSG00000185372	OR2V1	OR2V1P|OST265	olfactory receptor family 2 subfamily V member 1	protein-coding
112403	chr19	6160751	6161850	+	0	NA	intron (NM_030924, intron 6 of 14)	intron (NM_030924, intron 6 of 14)	25633	NM_001289179	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
50856	chr12	49133871	49135000	+	0	NA	Intergenic	AluY|SINE|Alu	-3040	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
141951	chr20	1282971	1283330	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	16856	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
45822	chr11	119361321	119361750	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	2673	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
232091	chr9	133656401	133657000	+	0	NA	intron (NM_000787, intron 10 of 11)	intron (NM_000787, intron 10 of 11)	708	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
119235	chr19	39472071	39473600	+	0	NA	exon (NM_001319991, exon 21 of 29)	exon (NM_001319991, exon 21 of 29)	4613	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
162358	chr3	47845771	47845930	+	0	NA	exon (NM_138615, exon 10 of 22)	exon (NM_138615, exon 10 of 22)	-3705	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
204487	chr7	4751751	4752050	+	0	NA	intron (NM_001037165, intron 2 of 8)	intron (NM_001037165, intron 2 of 8)	-23723	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
134489	chr2	143279051	143279350	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	149781	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
26641	chr10	22507351	22507450	+	0	NA	Intergenic	AluSz|SINE|Alu	-69471	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
118925	chr19	38738421	38739030	+	0	NA	intron (NM_144691, intron 5 of 20)	intron (NM_144691, intron 5 of 20)	5749	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
45993	chr11	121512501	121512850	+	0	NA	intron (NM_003105, intron 6 of 47)	intron (NM_003105, intron 6 of 47)	-30886	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
144200	chr20	34305051	34305630	+	0	NA	intron (NM_001161766, intron 1 of 9)	AluY|SINE|Alu	-1985	NM_000687	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
91603	chr17	5297271	5297430	+	0	NA	intron (NM_001291581, intron 1 of 16)	intron (NM_001291581, intron 1 of 16)	15066	NM_001083585	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
17315	chr1	156460421	156461100	+	0	NA	Intergenic	Intergenic	29927	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
92635	chr17	10122051	10123000	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	76081	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
178623	chr4	152107671	152108030	+	0	NA	Intergenic	Intergenic	7032	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
197829	chr6	87907421	87907880	+	0	NA	intron (NR_110869, intron 2 of 4)	intron (NR_110869, intron 2 of 4)	122790	NR_110869	101928911		NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
198240	chr6	99349321	99349880	+	0	NA	promoter-TSS (NM_032511)	promoter-TSS (NM_032511)	74	NM_032511	84553		NM_032511	ENSG00000146267	FAXC	C6orf168|dJ273F20	failed axon connections homolog, metaxin like GST domain containing	protein-coding
184364	chr5	97162021	97162450	+	0	NA	3' UTR (NM_018343, exon 10 of 10)	3' UTR (NM_018343, exon 10 of 10)	-19624	NM_153234	167410		NM_153234	ENSG00000145721	LIX1	C5orf11|Lft	limb and CNS expressed 1	protein-coding
128147	chr2	48415221	48416030	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-25141	NM_001135629	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
141865	chr20	652711	653750	+	0	NA	promoter-TSS (NM_080725)	promoter-TSS (NM_080725)	-30	NM_080725	140809		NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
187205	chr5	140671151	140671930	+	0	NA	TTS (NM_017706)	TTS (NM_017706)	2036	NM_194249	373863		NM_194249	ENSG00000256453	DND1	RBMS4	DND microRNA-mediated repression inhibitor 1	protein-coding
47716	chr12	6455201	6456030	+	0	NA	intron (NR_147127, intron 3 of 8)	intron (NR_147127, intron 3 of 8)	3573	NR_147127	55080		NM_018009	ENSG00000139192	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein like	protein-coding
43514	chr11	81658851	81658950	+	0	NA	Intergenic	L1PA17|LINE|L1	231936	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
154201	chr22	31402871	31403700	+	0	NA	intron (NM_004147, intron 3 of 8)	L2a|LINE|L2	3681	NM_004147	4733		NM_004147	ENSG00000185721	DRG1	NEDD3|TANALS	developmentally regulated GTP binding protein 1	protein-coding
3453	chr1	15936901	15937300	+	0	NA	intron (NM_015001, intron 11 of 14)	intron (NM_015001, intron 11 of 14)	39001	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
82682	chr16	19884671	19885490	+	0	NA	promoter-TSS (NM_016235)	promoter-TSS (NM_016235)	-232	NM_016235	51704		NM_016235	ENSG00000167191	GPRC5B	MLC3|RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding
21255	chr1	204381971	204383030	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-12781	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
143312	chr20	25388501	25389000	+	0	NA	intron (NM_001042472, intron 1 of 12)	intron (NM_001042472, intron 1 of 12)	2085	NM_015600	26090		NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12	abhydrolase domain containing 12, lysophospholipase	protein-coding
207941	chr7	51141471	51141630	+	0	NA	intron (NM_001346441, intron 5 of 12)	intron (NM_001346441, intron 5 of 12)	175259	NM_001346441	23242		NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
84759	chr16	30978451	30978850	+	0	NA	intron (NM_014712, intron 13 of 18)	intron (NM_014712, intron 13 of 18)	-6557	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
164675	chr3	67113671	67114080	+	0	NA	Intergenic	Intergenic	-111589	NR_036234	100422941		NR_036234	ENSG00000283298	MIR4272	-	microRNA 4272	ncRNA
48037	chr12	6958041	6958350	+	0	NA	intron (NM_002831, intron 11 of 15)	intron (NM_002831, intron 11 of 15)	-5050	NR_135032	105369635		NR_135032	ENSG00000257084	MIR200CHG	U47924.27	MIR200C and MIR141 host gene	ncRNA
56475	chr12	116143351	116143880	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	5039	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
80461	chr16	2687111	2687950	+	0	NA	intron (NM_018992, intron 1 of 5)	MER58A|DNA|hAT-Charlie	5007	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
50021	chr12	42589351	42590400	+	0	NA	promoter-TSS (NM_153026)	promoter-TSS (NM_153026)	-129	NM_153026	144165		NM_153026	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle planar cell polarity protein 1	protein-coding
190747	chr6	408701	408930	+	0	NA	non-coding (NR_046000, exon 10 of 10)	non-coding (NR_046000, exon 10 of 10)	17063	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
126082	chr2	25814651	25814980	+	0	NA	intron (NM_018263, intron 2 of 11)	intron (NM_018263, intron 2 of 11)	16086	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
56323	chr12	112798051	112798300	+	0	NA	intron (NM_001347955, intron 2 of 20)	intron (NM_001347955, intron 2 of 20)	6427	NM_001347954	22895		NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding
139330	chr2	219557221	219557480	+	0	NA	exon (NM_001173431, exon 12 of 14)	exon (NM_001173431, exon 12 of 14)	-8203	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
219661	chr8	80493821	80494080	+	0	NA	intron (NM_023929, intron 1 of 6)	intron (NM_023929, intron 1 of 6)	7724	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
150209	chr21	39384571	39384980	+	0	NA	intron (NM_001350296, intron 1 of 4)	intron (NM_001350296, intron 1 of 4)	-2988	NM_001146218	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
39602	chr11	61334471	61334930	+	0	NA	5' UTR (NM_001351980, exon 2 of 19)	5' UTR (NM_001351980, exon 2 of 19)	1472	NM_001351979	26007		NM_015533	ENSG00000149476	TKFC	DAK|NET45|TKFCD	triokinase and FMN cyclase	protein-coding
21775	chr1	206924601	206924900	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-2809	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
206267	chr7	29345671	29345900	+	0	NA	intron (NM_001293070, intron 2 of 13)	intron (NM_001293070, intron 2 of 13)	-133927	NM_001293077	1124		NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
35521	chr11	1560131	1561200	+	0	NA	intron (NM_004420, intron 3 of 6)	intron (NM_004420, intron 3 of 6)	11606	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
85246	chr16	48365451	48367330	+	0	NA	promoter-TSS (NM_001006610)	promoter-TSS (NM_001006610)	-503	NM_001006610	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
136269	chr2	174681171	174681350	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	1639	NM_001077269	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
14224	chr1	143215551	143215900	+	0	NA	Intergenic	Intergenic	206867	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
31529	chr10	96844701	96844900	+	0	NA	intron (NM_032440, intron 2 of 7)	intron (NM_032440, intron 2 of 7)	11855	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
84279	chr16	30070071	30072130	+	0	NA	TTS (NM_001243177)	TTS (NM_001243177)	-4894	NM_001303503	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
130481	chr2	85558021	85558480	+	0	NA	TTS (NM_001311312)	TTS (NM_001311312)	3243	NM_001311312	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
38650	chr11	46372551	46372650	+	0	NA	intron (NM_001199266, intron 11 of 30)	intron (NM_001199266, intron 11 of 30)	-3802	NR_039837	100616368		NR_039837	ENSG00000264102	MIR4688	mir-4688	microRNA 4688	ncRNA
57085	chr12	121027301	121027700	+	0	NA	intron (NM_198213, intron 3 of 4)	intron (NM_198213, intron 3 of 4)	-11013	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
80800	chr16	3363951	3364200	+	0	NA	Intergenic	MER51A|LTR|ERV1	8186	NM_012368	4993		NM_012368	ENSG00000168158	OR2C1	OLFmf3|OR2C2P	olfactory receptor family 2 subfamily C member 1	protein-coding
92412	chr17	8380771	8381080	+	0	NA	intron (NM_001315531, intron 2 of 3)	LTR8|LTR|ERV1	2268	NM_001315530	6154		NM_000987	ENSG00000161970	RPL26	DBA11|L26|uL24	ribosomal protein L26	protein-coding
21614	chr1	206569621	206569880	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	12586	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
109089	chr18	79959921	79960880	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-4243	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
229964	chr9	126716901	126717230	+	0	NA	Intergenic	LTR5A|LTR|ERVK	-87941	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
239087	chrY	10462571	10462730	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	551852	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
72321	chr15	31260701	31260900	+	0	NA	Intergenic	L1ME3A|LINE|L1	-29938	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
9397	chr1	47437201	47439330	+	0	NA	promoter-TSS (NR_126355)	promoter-TSS (NR_126355)	221	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
156818	chr22	41933251	41934750	+	0	NA	Intergenic	Intergenic	6219	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
116898	chr19	18743421	18743680	+	0	NA	intron (NM_015321, intron 2 of 13)	intron (NM_015321, intron 2 of 13)	47755	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
226989	chr9	83538521	83538780	+	0	NA	promoter-TSS (NM_001244959)	promoter-TSS (NM_001244959)	-249	NM_174938	257019		NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
106064	chr18	9106371	9106530	+	0	NA	intron (NM_021074, intron 1 of 7)	intron (NM_021074, intron 1 of 7)	3751	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
76582	chr15	75338851	75339400	+	0	NA	intron (NM_001284378, intron 5 of 5)	intron (NM_001284378, intron 5 of 5)	3062	NM_001321844	54939		NM_017828	ENSG00000140365	COMMD4	-	COMM domain containing 4	protein-coding
11699	chr1	91856101	91856500	+	0	NA	intron (NR_036634, intron 2 of 17)	AluY|SINE|Alu	29851	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
15691	chr1	150979101	150979930	+	0	NA	Intergenic	Intergenic	-2777	NM_003568	8416		NM_003568	ENSG00000143412	ANXA9	ANX31	annexin A9	protein-coding
186430	chr5	135945071	135945250	+	0	NA	Intergenic	Intergenic	9823	NM_002302	3950		NM_002302	ENSG00000145826	LECT2	chm-II|chm2	leukocyte cell derived chemotaxin 2	protein-coding
54921	chr12	96190001	96190300	+	0	NA	Intergenic	Intergenic	-4225	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
214596	chr7	150667951	150669280	+	0	NA	Intergenic	Intergenic	-17091	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
120871	chr19	45540251	45540550	+	0	NA	intron (NM_001017989, intron 1 of 1)	intron (NM_001017989, intron 1 of 1)	32921	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
233629	chrX	526471	526830	+	0	NA	Intergenic	Intergenic	-97694	NM_006883	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
43135	chr11	75274651	75274830	+	0	NA	intron (NM_020251, intron 10 of 14)	AluY|SINE|Alu	33966	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
103627	chr17	78742151	78742850	+	0	NA	intron (NM_017456, intron 1 of 12)	AluJb|SINE|Alu	-5598	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
99717	chr17	50884571	50884730	+	0	NA	Intergenic	Intergenic	-16672	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
215310	chr7	157339121	157339600	+	0	NA	intron (NM_001363676, intron 1 of 6)	AluY|SINE|Alu	2356	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
139284	chr2	219507471	219508200	+	0	NA	TTS (NM_013335)	TTS (NM_013335)	-6647	NM_182847	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
3320	chr1	15414551	15415180	+	0	NA	intron (NM_024329, intron 1 of 3)	MIRb|SINE|MIR	4977	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
26010	chr10	12198101	12198330	+	0	NA	intron (NM_006023, intron 1 of 12)	intron (NM_006023, intron 1 of 12)	2027	NM_006023	8872		NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
77999	chr15	89595771	89595930	+	0	NA	intron (NM_001308025, intron 7 of 21)	AluSz6|SINE|Alu	20263	NM_001308025	90381		NM_152259	ENSG00000140534	TICRR	C15orf42|SLD3|Treslin	TOPBP1 interacting checkpoint and replication regulator	protein-coding
280	chr1	936221	936480	+	0	NA	intron (NM_001385641, intron 5 of 13)	CpG	10619	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
238538	chrX	153741151	153741450	+	0	NA	intron (NM_000033, intron 7 of 9)	intron (NM_000033, intron 7 of 9)	16444	NM_000033	215		NM_000033	ENSG00000101986	ABCD1	ABC42|ALD|ALDP|AMN	ATP binding cassette subfamily D member 1	protein-coding
223338	chr8	143831021	143831300	+	0	NA	Intergenic	MIR|SINE|MIR	-1845	NM_014281	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
22416	chr1	220045901	220047630	+	0	NA	promoter-TSS (NM_004446)	promoter-TSS (NM_004446)	-260	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
209982	chr7	92831251	92831550	+	0	NA	intron (NM_001145306, intron 2 of 7)	intron (NM_001145306, intron 2 of 7)	2559	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
157186	chr22	43078571	43079730	+	0	NA	intron (NR_027779, intron 2 of 11)	intron (NR_027779, intron 2 of 11)	10241	NM_012263	25809		NM_012263	ENSG00000100271	TTLL1	C22orf7|HS323M22B|TPGS3	TTL family tubulin polyglutamylase complex subunit L1	protein-coding
219805	chr8	81283201	81284280	+	0	NA	intron (NM_001444, intron 2 of 3)	intron (NM_001444, intron 2 of 3)	3204	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
60642	chr13	42395771	42395930	+	0	NA	Intergenic	Intergenic	-29042	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
209213	chr7	75444121	75444650	+	0	NA	TTS (NR_160304)	TTS (NR_160304)	34063	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
76318	chr15	74387151	74387480	+	0	NA	intron (NR_146881, intron 2 of 3)	intron (NR_146881, intron 2 of 3)	8233	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
48814	chr12	12071551	12071650	+	0	NA	5' UTR (NM_030766, exon 1 of 6)	5' UTR (NM_030766, exon 1 of 6)	132	NM_030766	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
140089	chr2	231453221	231453750	+	0	NA	TTS (NM_005381)	TTS (NM_005381)	2451	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
213058	chr7	131066951	131067730	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	39690	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
214568	chr7	150587721	150587980	+	0	NA	Intergenic	Intergenic	20460	NM_018326	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
12030	chr1	97789801	97790150	+	0	NA	intron (NM_001160301, intron 3 of 5)	intron (NM_001160301, intron 3 of 5)	-6946	NR_046591	100873933		NR_046591	ENSG00000235777	DPYD-AS2	-	DPYD antisense RNA 2	ncRNA
115334	chr19	15129751	15130400	+	0	NA	Intergenic	Intergenic	-4289	NM_006844	10994		NM_006844	ENSG00000105135	ILVBL	209L8|AHAS|HACL1L|HACL2|ILV2H	ilvB acetolactate synthase like	protein-coding
116866	chr19	18640701	18641100	+	0	NA	intron (NM_001345984, intron 1 of 3)	L1ME1|LINE|L1	-3738	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
7457	chr1	33083151	33083250	+	0	NA	intron (NM_001350400, intron 4 of 11)	L2c|LINE|L2	1022	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
8141	chr1	39327901	39328880	+	0	NA	intron (NM_012090, intron 35 of 92)	A-rich|Low_complexity|Low_complexity	-80683	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
67568	chr14	71400751	71401050	+	0	NA	intron (NM_001354287, intron 2 of 23)	intron (NM_001354287, intron 2 of 23)	2563	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
196055	chr6	42118351	42118650	+	0	NA	intron (NM_001164446, intron 2 of 4)	intron (NM_001164446, intron 2 of 4)	24120	NM_001164446	647024		NM_001164446	ENSG00000188112	C6orf132	LncCCLM|bA7K24.2	chromosome 6 open reading frame 132	protein-coding
151422	chr21	46100671	46101190	+	0	NA	intron (NM_001849, intron 1 of 27)	L1MB3|LINE|L1	2811	NM_058175	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
205500	chr7	17946621	17947080	+	0	NA	Intergenic	Intergenic	-6342	NM_001350868	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
125054	chr2	9617071	9617230	+	0	NA	intron (NM_006826, intron 2 of 5)	AluY|SINE|Alu	13847	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
115001	chr19	14055821	14056080	+	0	NA	intron (NM_001145028, intron 5 of 6)	AluSz|SINE|Alu	1688	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
192448	chr6	24904671	24905030	+	0	NA	intron (NM_001286446, intron 1 of 13)	AluSz|SINE|Alu	5884	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
188385	chr5	152345451	152345780	+	0	NA	Intergenic	L1PA2|LINE|L1	59664	NM_020167	56923		NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
81997	chr16	11905251	11905700	+	0	NA	intron (NM_001130007, intron 1 of 14)	intron (NM_001130007, intron 1 of 14)	10481	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
99925	chr17	57047501	57047700	+	0	NA	TTS (NR_002818)	TTS (NR_002818)	2122	NR_002818	376412		NR_002818	ENSG00000293179	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
87844	chr16	75654471	75655030	+	0	NA	intron (NM_018975, intron 2 of 2)	AluY|SINE|Alu	6977	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
67739	chr14	73590001	73590600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1406	NM_152331	122970		NM_152331	ENSG00000177465	ACOT4	PTE-Ib|PTE1B|PTE2B	acyl-CoA thioesterase 4	protein-coding
140383	chr2	233063171	233065330	+	0	NA	intron (NM_001017915, intron 1 of 26).2	intron (NM_001017915, intron 1 of 26).2	3908	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
159433	chr3	13650001	13651400	+	0	NA	promoter-TSS (NR_027103)	promoter-TSS (NR_027103)	-21	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
231920	chr9	133105721	133106000	+	0	NA	intron (NM_001271775, intron 9 of 17)	(GCCCCA)n|Simple_repeat|Simple_repeat	15380	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
174451	chr4	39706551	39707430	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSx|SINE|Alu	8854	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
183862	chr5	87195101	87195330	+	0	NA	intron (NR_105018, intron 2 of 3)	intron (NR_105018, intron 2 of 3)	43986	NR_130914	55338		NM_018382		LINC01949	-	long intergenic non-protein coding RNA 1949	ncRNA
100118	chr17	58340971	58341330	+	0	NA	intron (NR_038418, intron 2 of 3)	intron (NR_038418, intron 2 of 3)	3948	NR_038418	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
133743	chr2	127464421	127464680	+	0	NA	Intergenic	Intergenic	-40932	NR_039944	100616187		NR_039944	ENSG00000264075	MIR4783	-	microRNA 4783	ncRNA
61145	chr13	48704771	48704930	+	0	NA	intron (NM_001308467, intron 5 of 5)	L1MD1|LINE|L1	50921	NM_001308476	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
53488	chr12	66236151	66236550	+	0	NA	intron (NM_001142523, intron 7 of 10)	AluSz|SINE|Alu	-14732	NR_106757	102465249		NR_106757	ENSG00000284011	MIR6502	hsa-mir-6502	microRNA 6502	ncRNA
14712	chr1	145938721	145939380	+	0	NA	intron (NM_153713, intron 3 of 5)	AluJb|SINE|Alu	-11566	NM_005105	9939		NM_005105	ENSG00000265241	RBM8A	BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1	RNA binding motif protein 8A	protein-coding
28104	chr10	43393501	43394130	+	0	NA	intron (NM_001098204, intron 3 of 3)	L2b|LINE|L2	3016	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
17233	chr1	156293271	156293430	+	0	NA	TTS (NR_026678)	TTS (NR_026678)	-1852	NM_001323617	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
181315	chr5	40354851	40354950	+	0	NA	Intergenic	MER52A|LTR|ERV1	302609	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
59742	chr13	29934721	29936560	+	0	NA	promoter-TSS (NR_033889)	promoter-TSS (NR_033889)	-891	NR_033889	440131		NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
163138	chr3	50138451	50139400	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-16133	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
142085	chr20	2468451	2469100	+	0	NA	intron (NM_003091, intron 1 of 6)	AluSx1|SINE|Alu	2014	NM_003091	6628		NM_003091	ENSG00000125835	SNRPB	CCMS|COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B	small nuclear ribonucleoprotein polypeptides B and B1	protein-coding
16436	chr1	154571721	154571980	+	0	NA	exon (NM_000748, exon 5 of 6)	exon (NM_000748, exon 5 of 6)	4072	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
144814	chr20	36757651	36758000	+	0	NA	intron (NM_001145318, intron 7 of 9)	intron (NM_001145318, intron 7 of 9)	-11735	NM_032013	57446		NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
52447	chr12	55930101	55931430	+	0	NA	promoter-TSS (NM_001345)	promoter-TSS (NM_001345)	-397	NM_001345	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
221770	chr8	127916671	127917050	+	0	NA	intron (NR_003367, intron 2 of 8)	intron (NR_003367, intron 2 of 8)	31863	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
239314	chrY	17481271	17481830	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	-19408	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
35670	chr11	1873271	1873430	+	0	NA	intron (NM_001013254, intron 1 of 10)	L2c|LINE|L2	2426	NM_001013255	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
115280	chr19	14560271	14561280	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	11291	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
102893	chr17	76529901	76530100	+	0	NA	intron (NM_134268, intron 3 of 3)	intron (NM_134268, intron 3 of 3)	2414	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
41290	chr11	65863251	65863830	+	0	NA	intron (NR_146598, intron 8 of 15)	intron (NR_146598, intron 8 of 15)	3107	NR_146598	80198		NM_025128	ENSG00000172732	MUS81	SLX3	MUS81 structure-specific endonuclease subunit	protein-coding
226548	chr9	72354671	72355730	+	0	NA	3' UTR (NM_006007, exon 6 of 6)	3' UTR (NM_006007, exon 6 of 6)	9356	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
152205	chr22	20121601	20121800	+	0	NA	intron (NM_002882, intron 2 of 5)	AluJo|SINE|Alu	3955	NM_001278641	5902		NM_002882	ENSG00000099901	RANBP1	HTF9A	RAN binding protein 1	protein-coding
195906	chr6	41729671	41729850	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	3850	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
33283	chr10	114543421	114543680	+	0	NA	intron (NM_001322883, intron 6 of 20)	L1MB5|LINE|L1	-16637	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
124846	chr2	7766371	7766930	+	0	NA	Intergenic	Intergenic	133005	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
109383	chr19	653951	654530	+	0	NA	intron (NM_194460, intron 1 of 8)	intron (NM_194460, intron 1 of 8)	8974	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
149118	chr21	17607951	17608450	+	0	NA	intron (NM_001130914, intron 2 of 5)	AluJr4|SINE|Alu	-3486	NR_149073	110806272		NR_149073	ENSG00000280594	BTG3-AS1	ASBEL	BTG3 antisense RNA 1	ncRNA
59308	chr13	24278951	24280250	+	0	NA	intron (NM_001286794, intron 2 of 10)	L2a|LINE|L2	8850	NM_001286793	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
234095	chrX	9342501	9343100	+	0	NA	Intergenic	CpG	-120495	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
235493	chrX	47088821	47090330	+	0	NA	intron (NM_001282849, intron 4 of 6)	(TA)n|Simple_repeat|Simple_repeat	11132	NM_152869	9104		NM_004683	ENSG00000130988	RGN	GNL|HEL-S-41|RC|SMP30	regucalcin	protein-coding
41265	chr11	65839801	65840030	+	0	NA	intron (NM_152760, intron 1 of 12)	AluSp|SINE|Alu	5952	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
66531	chr14	61759421	61760080	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2670	NM_003082	6617		NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
133644	chr2	127045371	127045530	+	0	NA	Intergenic	Intergenic	36615	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
33076	chr10	110891201	110891600	+	0	NA	intron (NM_145341, intron 9 of 12)	AluSz6|SINE|Alu	-6690	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
225257	chr9	34338201	34338400	+	0	NA	intron (NM_147172, intron 2 of 4)	AluJb|SINE|Alu	8731	NM_001161	318		NM_001161	ENSG00000164978	NUDT2	APAH1|IDDPN	nudix hydrolase 2	protein-coding
195656	chr6	37936851	37937180	+	0	NA	intron (NM_021943, intron 2 of 5)	intron (NM_021943, intron 2 of 5)	117288	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
66040	chr14	58296271	58296680	+	0	NA	intron (NR_029434, intron 1 of 4)	AluSz6|SINE|Alu	1662	NR_029435	379025		NR_029434	ENSG00000257621	PSMA3-AS1	-	PSMA3 antisense RNA 1	ncRNA
9802	chr1	53737751	53738180	+	0	NA	exon (NM_001367484, exon 2 of 11)	exon (NM_001367484, exon 2 of 11)	1199	NM_001367484	148979		NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
167527	chr3	129283951	129284250	+	0	NA	intron (NM_001370345, intron 2 of 5)	Tigger17a|DNA|TcMar-Tigger	5106	NM_001370343	56941		NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine binding, ES cell specific	protein-coding
53315	chr12	64604551	64605050	+	0	NA	Intergenic	AluYc|SINE|Alu	-5695	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
196423	chr6	43429151	43429850	+	0	NA	intron (NM_001350518, intron 2 of 21)	AluJb|SINE|Alu	1637	NR_146762	89845		NM_033450	ENSG00000124574	ABCC10	EST182763|MRP7|SIMRP7	ATP binding cassette subfamily C member 10	protein-coding
124024	chr19	55481671	55482630	+	0	NA	exon (NM_033113, exon 3 of 3)	exon (NM_033113, exon 3 of 3)	-3038	NM_020378	57106		NM_020378	ENSG00000090971	NAT14	KLP1	N-acetyltransferase 14 (putative)	protein-coding
221558	chr8	125000521	125001400	+	0	NA	intron (NM_003129, intron 1 of 10)	MIRb|SINE|MIR	2455	NM_003129	6713		NM_003129	ENSG00000104549	SQLE	-	squalene epoxidase	protein-coding
170541	chr3	186774121	186774780	+	0	NA	Intergenic	AluY|SINE|Alu	-9127	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
227170	chr9	86948331	86949230	+	0	NA	promoter-TSS (NR_049794)	promoter-TSS (NR_049794)	82	NR_049794	100506834		NR_049794	ENSG00000226237	GAS1RR	LncRNA-Hh	GAS1 adjacent regulatory RNA	ncRNA
36567	chr11	6650651	6651350	+	0	NA	intron (NM_003737, intron 1 of 20)	intron (NM_003737, intron 1 of 20)	4809	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
180784	chr5	32208271	32208730	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-34181	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
235080	chrX	40178051	40178680	+	0	NA	Intergenic	Intergenic	-1036	NM_001123383	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
127676	chr2	43189251	43189750	+	0	NA	Intergenic	AluSx1|SINE|Alu	37106	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
158133	chr22	50171321	50172680	+	0	NA	intron (NM_052839, intron 1 of 2)	intron (NM_052839, intron 1 of 2)	1269	NM_052839	56666		NM_052839	ENSG00000073150	PANX2	PX2|hPANX2	pannexin 2	protein-coding
42833	chr11	72970951	72971050	+	0	NA	intron (NM_014824, intron 8 of 19)	MLT1G1|LTR|ERVL-MaLR	156589	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
43353	chr11	76680771	76681150	+	0	NA	intron (NR_024042, intron 20 of 20)	intron (NR_024042, intron 20 of 20)	-10213	NM_001128922	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
87914	chr16	79163751	79164050	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	436837	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
1970	chr1	6593801	6594230	+	0	NA	3' UTR (NM_001324309, exon 4 of 4)	3' UTR (NM_001324309, exon 4 of 4)	8854	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
216363	chr8	17602601	17602950	+	0	NA	intron (NM_001372073, intron 2 of 5)	intron (NM_001372073, intron 2 of 5)	25559	NM_001372073	5157		NM_006207	ENSG00000104213	PDGFRL	PDGRL|PRLTS	platelet derived growth factor receptor like	protein-coding
187211	chr5	140692501	140693200	+	0	NA	intron (NM_001363536, intron 2 of 13)	AluSx|SINE|Alu	-1123	NM_001289094	3035		NM_002109	ENSG00000170445	HARS1	CMT2W|HARS|HRS|USH3B	histidyl-tRNA synthetase 1	protein-coding
20612	chr1	198937151	198937830	+	0	NA	promoter-TSS (NR_040073)	promoter-TSS (NR_040073)	-61	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
16103	chr1	153628201	153628830	+	0	NA	promoter-TSS (NM_001024211)	promoter-TSS (NM_001024211)	81	NM_006271	6271		NM_006271	ENSG00000160678	S100A1	S100|S100-alpha|S100A	S100 calcium binding protein A1	protein-coding
135337	chr2	160386671	160387030	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	21032	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
114295	chr19	11737371	11737530	+	0	NA	intron (NM_001080493, intron 1 of 3)	AluSp|SINE|Alu	1496	NM_001297610	55552		NM_017507	ENSG00000197933	ZNF823	HSZFP36	zinc finger protein 823	protein-coding
205339	chr7	12675001	12675600	+	0	NA	Intergenic	Intergenic	-11527	NM_212460	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
154215	chr22	31505771	31505930	+	0	NA	intron (NM_001258326, intron 1 of 30)	AluJb|SINE|Alu	9314	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
3598	chr1	16236801	16237480	+	0	NA	promoter-TSS (NM_030907)	promoter-TSS (NM_030907)	43	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
175421	chr4	70995721	70996400	+	0	NA	intron (NM_000788, intron 1 of 6)	AluJr|SINE|Alu	2411	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
62446	chr13	99339451	99340300	+	0	NA	intron (NR_026644, intron 6 of 8)	intron (NR_026644, intron 6 of 8)	-11545	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
45499	chr11	118635951	118636250	+	0	NA	intron (NM_001144759, intron 10 of 20)	intron (NM_001144759, intron 10 of 20)	-7900	NR_106773	102466719		NR_106773	ENSG00000284246	MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
41491	chr11	66245071	66245230	+	0	NA	TTS (NM_018026)	TTS (NM_018026)	-12144	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
41805	chr11	66880571	66881200	+	0	NA	intron (NM_001040716, intron 3 of 22)	intron (NM_001040716, intron 3 of 22)	23821	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
98253	chr17	46176251	46177050	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluSq|SINE|Alu	16132	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
222523	chr8	140567001	140567400	+	0	NA	intron (NM_012154, intron 3 of 18)	intron (NM_012154, intron 3 of 18)	55204	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
235201	chrX	41346971	41347950	+	0	NA	intron (NM_001193417, intron 15 of 15)	intron (NM_001193417, intron 15 of 15)	13294	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
113647	chr19	10356501	10356700	+	0	NA	exon (NM_003331, exon 18 of 25)	exon (NM_003331, exon 18 of 25)	-16976	NM_002162	3385		NM_002162	ENSG00000076662	ICAM3	CD50|CDW50|ICAM-R	intercellular adhesion molecule 3	protein-coding
18389	chr1	161396251	161396550	+	0	NA	Intergenic	Intergenic	-28524	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
96397	chr17	40137571	40137730	+	0	NA	TTS (NM_001012241)	TTS (NM_001012241)	-2887	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
209886	chr7	91880421	91881480	+	0	NA	promoter-TSS (NM_006980)	promoter-TSS (NM_006980)	-248	NM_001301134	7978		NM_006980	ENSG00000127989	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
180683	chr5	21341251	21342430	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-117640	NR_027027	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
183998	chr5	90526801	90527400	+	0	NA	intron (NM_198273, intron 1 of 2)	intron (NM_198273, intron 1 of 2)	2484	NM_198273	116068		NM_198273	ENSG00000176018	LYSMD3	-	LysM domain containing 3	protein-coding
29131	chr10	68526721	68528600	+	0	NA	promoter-TSS (NM_001324314)	promoter-TSS (NM_001324314)	-137	NM_001324317	8034		NM_152707	ENSG00000122912	SLC25A16	D10S105E|GDA|GDC|HGT.1|ML7|hGP|hML7	solute carrier family 25 member 16	protein-coding
142804	chr20	13996151	13996250	+	0	NA	promoter-TSS (NR_073207)	promoter-TSS (NR_073207)	684	NM_080676	140733		NM_080676	ENSG00000172264	MACROD2	C20orf133|C2orf133	mono-ADP ribosylhydrolase 2	protein-coding
191045	chr6	3229651	3230350	+	0	NA	Intergenic	Intergenic	-1403	NR_147505	100422781		NR_147505		LOC100422781	-	uncharacterized LOC100422781	ncRNA
181586	chr5	43312671	43314200	+	0	NA	promoter-TSS (NM_001324219)	promoter-TSS (NM_001324219)	-23	NM_001324224	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
164392	chr3	58334851	58335380	+	0	NA	intron (NM_001349498, intron 1 of 17)	AluJo|SINE|Alu	1809	NM_001349498	54899		NM_017771	ENSG00000168297	PXK	MONAKA|SLOB	PX domain containing serine/threonine kinase like	protein-coding
141615	chr2	241669771	241670130	+	0	NA	intron (NM_013325, intron 10 of 12)	intron (NM_013325, intron 10 of 12)	16865	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
148418	chr20	63953951	63954850	+	0	NA	non-coding (NR_027287, exon 1 of 1)	non-coding (NR_027287, exon 1 of 1)	1016	NR_027287	100113386		NR_027287	ENSG00000280213	UCKL1-AS1	UCKL1-AS|UCKL1AS|UCKL1OS	UCKL1 antisense RNA 1	ncRNA
5458	chr1	25621601	25622130	+	0	NA	intron (NM_020379, intron 1 of 11)	AluSx1|SINE|Alu	5074	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
118768	chr19	38381421	38381880	+	0	NA	intron (NM_002812, intron 5 of 6)	intron (NM_002812, intron 5 of 6)	6384	NM_152657	199720		NM_152657	ENSG00000179168	GGN	-	gametogenetin	protein-coding
79798	chr16	1394601	1395080	+	0	NA	intron (NM_001372107, intron 6 of 14)	intron (NM_001372107, intron 6 of 14)	-15188	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
90616	chr17	1639271	1639700	+	0	NA	intron (NM_145350, intron 7 of 10).2	AluSx|SINE|Alu	6247	NM_145350	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
194626	chr6	33572851	33573350	+	0	NA	3' UTR (NM_001188, exon 6 of 6)	3' UTR (NM_001188, exon 6 of 6)	7176	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
202396	chr6	157860001	157860780	+	0	NA	intron (NM_016224, intron 1 of 17)	AluJo|SINE|Alu	37144	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
61644	chr13	73872521	73872780	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	261279	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
224227	chr9	5667471	5667630	+	0	NA	intron (NM_001206557, intron 2 of 24)	AluJr|SINE|Alu	38431	NM_001206557	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
188831	chr5	159101701	159102400	+	0	NA	intron (NR_109890, intron 1 of 2)	intron (NR_109890, intron 1 of 2)	1567	NR_109890	101927740		NR_109890	ENSG00000245812	LINC02202	-	long intergenic non-protein coding RNA 2202	ncRNA
148685	chr21	6216051	6219700	+	0	NA	Intergenic	Intergenic	33895	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
5289	chr1	25117471	25117630	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	94047	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
197074	chr6	53854971	53855130	+	0	NA	intron (NM_018214, intron 2 of 13)	intron (NM_018214, intron 2 of 13)	60045	NM_018214	55227		NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
224343	chr9	6788771	6788930	+	0	NA	intron (NR_148677, intron 1 of 21)	intron (NR_148677, intron 1 of 21)	30877	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
28605	chr10	56447651	56447750	+	0	NA	Intergenic	L1PA3|LINE|L1	-86427	NM_001005413	11130		NM_007057	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|SIP30|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
12541	chr1	108625751	108625850	+	0	NA	intron (NM_001010883, intron 6 of 10)	(TG)n|Simple_repeat|Simple_repeat	35293	NM_001102592	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
141488	chr2	241100221	241100480	+	0	NA	intron (NR_138466, intron 1 of 6)	Tigger2a|DNA|TcMar-Tigger	1937	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
136185	chr2	174522701	174522900	+	0	NA	Intergenic	Intergenic	35272	NR_004394	26827		NR_004394	ENSG00000206625	RNU6-1	RNU6|RNU6A|U6|U6-1	RNA, U6 small nuclear 1	snRNA
14172	chr1	121398451	121398750	+	0	NA	promoter-TSS (NR_104189)	promoter-TSS (NR_104189)	-695	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
219317	chr8	70143701	70144280	+	0	NA	intron (NM_001321711, intron 12 of 21)	intron (NM_001321711, intron 12 of 21)	-72738	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
188516	chr5	155726301	155726900	+	0	NA	Intergenic	Intergenic	-600564	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
29838	chr10	72334351	72336090	+	0	NA	3' UTR (NM_001002762, exon 8 of 8)	3' UTR (NM_001002762, exon 8 of 8)	19699	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
73478	chr15	43592951	43593050	+	0	NA	promoter-TSS (NR_135748)	promoter-TSS (NR_135748)	143	NR_135750	1159		NM_020990	ENSG00000237289	CKMT1B	CKMT|CKMT1|UMTCK	creatine kinase, mitochondrial 1B	protein-coding
95086	chr17	34040021	34040400	+	0	NA	intron (NM_001094, intron 1 of 9)	CpG	116596	NM_001094	40		NM_001094	ENSG00000108684	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid sensing ion channel subunit 2	protein-coding
99177	chr17	49434951	49435350	+	0	NA	Intergenic	Intergenic	-20245	NM_001281715	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
183966	chr5	88675751	88676130	+	0	NA	promoter-TSS (NR_146284)	promoter-TSS (NR_146284)	-278	NR_146284	109729137		NR_146284	ENSG00000245864	MEF2C-AS2	-	MEF2C antisense RNA 2	ncRNA
219084	chr8	65836701	65836980	+	0	NA	intron (NM_001242318, intron 1 of 12)	MER3|DNA|hAT-Charlie	5224	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
83151	chr16	23454251	23454350	+	0	NA	Intergenic	AluJr|SINE|Alu	-1111	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
174576	chr4	40236671	40236830	+	0	NA	intron (NM_001278364, intron 3 of 4)	AluSc|SINE|Alu	39719	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
27697	chr10	33140451	33140550	+	0	NA	Intergenic	L2a|LINE|L2	-23693	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
224192	chr9	5435971	5436400	+	0	NA	intron (NM_018465, intron 2 of 5)	intron (NM_018465, intron 2 of 5)	1740	NM_018465	55848		NM_018465	ENSG00000107020	PLGRKT	AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT)	plasminogen receptor with a C-terminal lysine	protein-coding
63062	chr13	113151201	113151750	+	0	NA	Intergenic	Intergenic	-7173	NM_003891	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
3461	chr1	15944771	15945000	+	0	NA	intron (NM_001324138, intron 6 of 14)	CpG-499	31216	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
56572	chr12	117150651	117151400	+	0	NA	intron (NM_015002, intron 11 of 11)	intron (NM_015002, intron 11 of 11)	39445	NM_015002	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
3386	chr1	15730571	15731330	+	0	NA	intron (NM_015164, intron 15 of 19)	intron (NM_015164, intron 15 of 19)	-5308	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
118796	chr19	38417471	38418500	+	0	NA	intron (NM_170604, intron 7 of 16)	CpG	8234	NM_001146202	115727		NM_052949	ENSG00000171777	RASGRP4	-	RAS guanyl releasing protein 4	protein-coding
158716	chr3	8356701	8357880	+	0	NA	intron (NR_033378, intron 3 of 3)	MER41E|LTR|ERV1	144368	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
43634	chr11	83724001	83724200	+	0	NA	intron (NR_165353, intron 12 of 19)	intron (NR_165353, intron 12 of 19)	825	NM_001377977	1740		NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
69938	chr14	99603371	99604900	+	0	NA	promoter-TSS (NM_001144995)	promoter-TSS (NM_001144995)	72	NM_001144995	317762		NM_022747	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
133258	chr2	113390121	113391080	+	0	NA	Intergenic	MIR3|SINE|MIR	-47091	NM_001330340	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
236711	chrX	77910071	77910950	+	0	NA	promoter-TSS (NM_001282224)	promoter-TSS (NM_001282224)	-146	NM_001282224	538		NM_000052	ENSG00000165240	ATP7A	DSMAX|HMNX|MK|MNK|SMAX3	ATPase copper transporting alpha	protein-coding
197938	chr6	89834571	89835830	+	0	NA	intron (NM_012115, intron 1 of 9)	L2b|LINE|L2	5320	NM_012115	9994		NM_012115	ENSG00000118412	CASP8AP2	CED-4|FLASH|RIP25	caspase 8 associated protein 2	protein-coding
181807	chr5	52712301	52712750	+	0	NA	Intergenic	Intergenic	-75391	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
147267	chr20	57451901	57452580	+	0	NA	Intergenic	Intergenic	-59184	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
19783	chr1	182388271	182388430	+	0	NA	intron (NM_001033044, intron 2 of 6)	intron (NM_001033044, intron 2 of 6)	3054	NM_001033056	2752		NM_002065	ENSG00000135821	GLUL	DEE116|GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
210400	chr7	99979501	99980350	+	0	NA	promoter-TSS (NR_036679)	promoter-TSS (NR_036679)	-837	NR_036679	646282		NR_036679	ENSG00000291148	AZGP1P1	-	AZGP1 pseudogene 1	pseudo
83858	chr16	28900371	28900530	+	0	NA	intron (NM_173201, intron 14 of 21)	intron (NM_173201, intron 14 of 21)	20407	NM_001286075	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
82338	chr16	15912501	15913100	+	0	NA	Intergenic	L1MB5|LINE|L1	-24197	NM_001304502	123811		NM_144600	ENSG00000133393	CEP20	C16orf63|FOPNL|FOR20|PHSECRG2	centrosomal protein 20	protein-coding
103771	chr17	78991601	78991800	+	0	NA	TTS (NM_138793)	TTS (NM_138793)	-11777	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
224049	chr9	3515921	3516300	+	0	NA	intron (NM_134428, intron 1 of 17)	AluY|SINE|Alu	9891	NM_002919	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
95273	chr17	35502401	35502600	+	0	NA	intron (NM_001363830, intron 2 of 4)	Harlequin-int|LTR|ERV1	-14761	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
202368	chr6	157774231	157774550	+	0	NA	Intergenic	Intergenic	-48856	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
40967	chr11	65359071	65359600	+	0	NA	Intergenic	AluSx1|SINE|Alu	4584	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
116962	chr19	18862621	18863150	+	0	NA	intron (NM_001297549, intron 18 of 23)	intron (NM_001297549, intron 18 of 23)	30926	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
164143	chr3	56756221	56757030	+	0	NA	intron (NM_001289698, intron 3 of 10)	AluY|SINE|Alu	19092	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
35903	chr11	2414901	2415300	+	0	NA	intron (NM_014555, intron 9 of 23)	CpG-3899	7945	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
74143	chr15	55255641	55256600	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	14166	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
69289	chr14	93084271	93084430	+	0	NA	intron (NM_014216, intron 2 of 10).2	MER20|DNA|hAT-Charlie	16898	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
92515	chr17	8898551	8900150	+	0	NA	intron (NM_001142633, intron 5 of 18)	intron (NM_001142633, intron 5 of 18)	13167	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
1618	chr1	3695601	3695950	+	0	NA	intron (NM_001204191, intron 1 of 9)	L2b|LINE|L2	-2271	NM_001204192	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
209507	chr7	76959501	76960880	+	0	NA	Intergenic	CpG	-20632	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
151786	chr22	18148771	18148930	+	0	NA	Intergenic	Intergenic	-1320	NM_017414	11274		NM_017414	ENSG00000184979	USP18	ISG43|PTORCH2|UBP43	ubiquitin specific peptidase 18	protein-coding
139509	chr2	224548971	224549130	+	0	NA	intron (NM_001257197, intron 1 of 14)	AluSz6|SINE|Alu	20905	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
134738	chr2	144597951	144598700	+	0	NA	Intergenic	Intergenic	-69642	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
93680	chr17	19306071	19306700	+	0	NA	promoter-TSS (NR_048576)	promoter-TSS (NR_048576)	-124	NR_048576	100874018		NR_048576	ENSG00000235397	EPN2-AS1	-	EPN2 antisense RNA 1	ncRNA
38926	chr11	47453401	47453700	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-4414	NM_032645	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
167845	chr3	134029621	134030080	+	0	NA	promoter-TSS (NM_005630)	promoter-TSS (NM_005630)	75	NM_005630	6578		NM_005630	ENSG00000174640	SLCO2A1	MATR1|OATP2A1|PGT|PHOAD|PHOAR2|SLC21A2	solute carrier organic anion transporter family member 2A1	protein-coding
48944	chr12	12727471	12728030	+	0	NA	intron (NM_001130415, intron 1 of 1)	AluJr|SINE|Alu	1833	NM_001130415	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
80295	chr16	2261001	2261200	+	0	NA	intron (NM_080594, intron 6 of 7)	AluY|SINE|Alu	6237	NM_001286625	10921		NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
25082	chr10	3861121	3861380	+	0	NA	Intergenic	Intergenic	27300	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
167370	chr3	128786321	128786680	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	-60308	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
32310	chr10	102154621	102155750	+	0	NA	intron (NM_004741, intron 1 of 12)	AluSp|SINE|Alu	2796	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
19128	chr1	171518221	171518850	+	0	NA	intron (NM_015172, intron 6 of 33)	AluSz6|SINE|Alu	33005	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
75510	chr15	66459721	66460080	+	0	NA	intron (NM_002755, intron 5 of 10)	intron (NM_002755, intron 5 of 10)	37134	NR_039737	100616149		NR_039737	ENSG00000266589	MIR4512	-	microRNA 4512	ncRNA
76485	chr15	74892201	74892800	+	0	NA	intron (NM_001289157, intron 3 of 6)	intron (NM_001289157, intron 3 of 6)	2458	NM_001289157	4351		NM_002435	ENSG00000178802	MPI	CDG1B|PMI|PMI1	mannose phosphate isomerase	protein-coding
229250	chr9	115524651	115524750	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	219539	NR_109805	101928775		NR_109805		LOC101928775	-	uncharacterized LOC101928775	ncRNA
54503	chr12	92094201	92095180	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	47023	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
106681	chr18	23232501	23233630	+	0	NA	intron (NR_023359, intron 4 of 6)	intron (NR_023359, intron 4 of 6)	77240	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
161874	chr3	45908051	45908750	+	0	NA	intron (NM_001276379, intron 2 of 9)	L2b|LINE|L2	7324	NM_001276378	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
4945	chr1	23966821	23967400	+	0	NA	non-coding (NR_034035, exon 7 of 7)	non-coding (NR_034035, exon 7 of 7)	7282	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
19821	chr1	182787771	182788250	+	0	NA	Intergenic	Intergenic	-1439	NM_001200052	80896		NM_030769	ENSG00000135838	NPL	C112|C1orf13|NAL|NPL1	N-acetylneuraminate pyruvate lyase	protein-coding
80260	chr16	2221621	2222350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1503	NM_001288776	1877		NM_004424	ENSG00000167967	E4F1	E4F	E4F transcription factor 1	protein-coding
119287	chr19	39765521	39766000	+	0	NA	Intergenic	Intergenic	-10693	NM_001143832	342900		NM_001143832	ENSG00000213921	LEUTX	-	leucine twenty homeobox	protein-coding
44067	chr11	95436651	95436750	+	0	NA	Intergenic	L1HS|LINE|L1	-204225	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
205033	chr7	6525771	6525930	+	0	NA	intron (NM_001145118, intron 4 of 21)	intron (NM_001145118, intron 4 of 21)	25586	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
204435	chr7	3177351	3177450	+	0	NA	Intergenic	L1ME4b|LINE|L1	-18827	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
179356	chr4	183336671	183337050	+	0	NA	Intergenic	Intergenic	-14434	NM_001185149	100132463		NM_001185149	ENSG00000185758	CLDN24	CLDN21	claudin 24	protein-coding
21115	chr1	203624821	203625080	+	0	NA	Intergenic	Intergenic	-1837	NM_001001396	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
124942	chr2	8587201	8587530	+	0	NA	Intergenic	Intergenic	-3573	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
77075	chr15	78900951	78901830	+	0	NA	Intergenic	AluSp|SINE|Alu	28401	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
195802	chr6	41075401	41075800	+	0	NA	5' UTR (NM_001329684, exon 2 of 8)	5' UTR (NM_001329684, exon 2 of 8)	2626	NM_021705	4800		NM_002505	ENSG00000001167	NFYA	CBF-A|CBF-B|HAP2|NF-YA	nuclear transcription factor Y subunit alpha	protein-coding
150584	chr21	43178871	43179130	+	0	NA	Intergenic	Intergenic	8764	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
216069	chr8	10587351	10587530	+	0	NA	Intergenic	Intergenic	61908	NM_001197020	203074		NM_198464	ENSG00000184647	PRSS55	CT153|T-SP1|TSP1|UNQ9391	serine protease 55	protein-coding
180298	chr5	5141701	5142030	+	0	NA	intron (NM_139056, intron 2 of 22)	intron (NM_139056, intron 2 of 22)	1535	NM_139056	170690		NM_139056	ENSG00000145536	ADAMTS16	ADAMTS16s	ADAM metallopeptidase with thrombospondin type 1 motif 16	protein-coding
96027	chr17	39261301	39261600	+	0	NA	3' UTR (NM_032875, exon 15 of 15)	3' UTR (NM_032875, exon 15 of 15)	23680	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
33438	chr10	119025171	119026230	+	0	NA	Intergenic	Intergenic	-4014	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
29720	chr10	72081021	72081280	+	0	NA	intron (NM_014767, intron 2 of 11)	intron (NM_014767, intron 2 of 11)	7401	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
7082	chr1	32034871	32035680	+	0	NA	intron (NR_073498, intron 4 of 8)	intron (NR_073498, intron 4 of 8)	21407	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
170325	chr3	184362501	184364350	+	0	NA	promoter-TSS (NM_001278698)	promoter-TSS (NM_001278698)	64	NM_001278698	5437		NM_006232	ENSG00000163882	POLR2H	RPABC3|RPB17|RPB8	RNA polymerase II, I and III subunit H	protein-coding
144664	chr20	36173551	36173880	+	0	NA	intron (NM_012156, intron 1 of 21)	intron (NM_012156, intron 1 of 21)	-17955	NR_147703	100130373		NR_147703		EPB41L1-AS1	-	EPB41L1 antisense RNA 1	ncRNA
238691	chrX	154065001	154065330	+	0	NA	intron (NM_001316337, intron 2 of 4)	intron (NM_001316337, intron 2 of 4)	31804	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
183612	chr5	80215351	80215650	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	40548	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
163894	chr3	52518571	52518730	+	0	NA	intron (NM_015136, intron 47 of 68)	intron (NM_015136, intron 47 of 68)	15207	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
172023	chr4	990201	990600	+	0	NA	intron (NM_022042, intron 2 of 2)	intron (NM_022042, intron 2 of 2)	3004	NM_134425	10861		NM_022042	ENSG00000145217	SLC26A1	CAON|CAON1|EDM4|HYSULF|SAT-1|SAT1	solute carrier family 26 member 1	protein-coding
92134	chr17	7623551	7623850	+	0	NA	intron (NM_001289114, intron 1 of 7)	AluJb|SINE|Alu	4121	NM_133491	112483		NM_133491	ENSG00000141504	SAT2	SSAT-2|SSAT2	spermidine/spermine N1-acetyltransferase family member 2	protein-coding
3856	chr1	16951351	16952130	+	0	NA	intron (NM_014675, intron 20 of 36)	intron (NM_014675, intron 20 of 36)	28880	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
239035	chrY	7039101	7039300	+	0	NA	intron (NM_134258, intron 5 of 17)	intron (NM_134258, intron 5 of 17)	128503	NM_033284	90665		NM_033284	ENSG00000092377	TBL1Y	DFNY2|TBL1	transducin beta like 1 Y-linked	protein-coding
112291	chr19	5834251	5834750	+	0	NA	intron (NM_001381958, intron 2 of 5)	intron (NM_001381958, intron 2 of 5)	4292	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
152211	chr22	20128851	20129680	+	0	NA	Intergenic	Intergenic	-2539	NM_001185024	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
88558	chr16	85529751	85529950	+	0	NA	Intergenic	Intergenic	-81559	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
142210	chr20	3045361	3047350	+	0	NA	TTS (NM_001501)	TTS (NM_001501)	303	NM_030811	64949		NM_030811	ENSG00000125901	MRPS26	C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3|mS26	mitochondrial ribosomal protein S26	protein-coding
47176	chr12	787971	788900	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	35512	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
4329	chr1	20489201	20489400	+	0	NA	Intergenic	AluJr|SINE|Alu	-3090	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
23363	chr1	228155901	228156900	+	0	NA	intron (NM_020435, intron 1 of 1)	intron (NM_020435, intron 1 of 1)	6470	NM_020435	57165		NM_020435	ENSG00000198835	GJC2	CX46.6|Cx47|GJA12|HLD2|LMPH1C|LMPHM3|PMLDAR|SPG44	gap junction protein gamma 2	protein-coding
216110	chr8	11200421	11202080	+	0	NA	non-coding (NR_138154, exon 1 of 3)	non-coding (NR_138154, exon 1 of 3)	116	NR_138152	286046		NM_173683	ENSG00000171044	XKR6	C8orf21|C8orf5|C8orf7|XRG6	XK related 6	protein-coding
156696	chr22	41680101	41680300	+	0	NA	intron (NM_001003796, intron 2 of 2)	intron (NM_001003796, intron 2 of 2)	8667	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
116616	chr19	18286651	18287000	+	0	NA	Intergenic	L2b|LINE|L2	4748	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
42180	chr11	67939071	67939230	+	0	NA	Intergenic	Intergenic	64947	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
160428	chr3	28301701	28301900	+	0	NA	intron (NM_001331186, intron 3 of 4)	L3|LINE|CR1	-46921	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
171058	chr3	195379721	195379980	+	0	NA	intron (NM_012287, intron 4 of 22)	L1M4|LINE|L1	63170	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
156940	chr22	42318801	42319200	+	0	NA	Intergenic	L2c|LINE|L2	-35073	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
9839	chr1	54199371	54201030	+	0	NA	promoter-TSS (NM_016491)	promoter-TSS (NM_016491)	33	NM_016491	51253		NM_016491	ENSG00000116221	MRPL37	L2mt|L37mt|MRP-L2|MRP-L37|MRPL2|RPML2|mL37	mitochondrial ribosomal protein L37	protein-coding
84601	chr16	30666901	30667800	+	0	NA	exon (NM_001105079, exon 14 of 18)	exon (NM_001105079, exon 14 of 18)	8919	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
220041	chr8	91953451	91953550	+	0	NA	Intergenic	Intergenic	64180	NM_175636	862		NM_004349	ENSG00000079102	RUNX1T1	AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	RUNX1 partner transcriptional co-repressor 1	protein-coding
60857	chr13	45645451	45645630	+	0	NA	Intergenic	L1PA2|LINE|L1	-29801	NM_182542	220081		NM_182542	ENSG00000165837	ERICH6B	FAM194B	glutamate rich 6B	protein-coding
166257	chr3	112390901	112391100	+	0	NA	Intergenic	Intergenic	57844	NM_005944	4345		NM_005944	ENSG00000091972	CD200	MOX1|MOX2|MRC|OX-2	CD200 molecule	protein-coding
89664	chr16	89365251	89365850	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	45098	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
16078	chr1	153510771	153511230	+	0	NA	Intergenic	Intergenic	24991	NM_014624	6277		NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA|S10A6	S100 calcium binding protein A6	protein-coding
19056	chr1	169814251	169814550	+	0	NA	intron (NM_001320048, intron 7 of 22)	Tigger2b_Pri|DNA|TcMar-Tigger	19360	NM_001366770	55732		NM_018186	ENSG00000000460	FIRRM	Apolo1|C1orf112|FLIP|MEICA1	FIGNL1 interacting regulator of recombination and mitosis	protein-coding
155095	chr22	37571171	37571600	+	0	NA	intron (NM_006498, intron 2 of 3)	intron (NM_006498, intron 2 of 3)	8702	NM_006498	3957		NM_006498	ENSG00000100079	LGALS2	HL14	galectin 2	protein-coding
144763	chr20	36615821	36616250	+	0	NA	intron (NM_175077, intron 5 of 7)	L1ME3E|LINE|L1	10256	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
115015	chr19	14075001	14075950	+	0	NA	TTS (NR_111941)	TTS (NR_111941)	2114	NR_106715	102466515		NR_106715	ENSG00000284081	MIR1199	hsa-mir-1199	microRNA 1199	ncRNA
21534	chr1	205849721	205850390	+	0	NA	promoter-TSS (NM_152491)	promoter-TSS (NM_152491)	77	NR_135186	148811		NM_152491	ENSG00000162877	PM20D1	Cps1	peptidase M20 domain containing 1	protein-coding
114413	chr19	12657951	12658450	+	0	NA	intron (NM_001173498, intron 9 of 23)	intron (NM_001173498, intron 9 of 23)	8542	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
154493	chr22	35657701	35658450	+	0	NA	intron (NM_030641, intron 2 of 2)	intron (NM_030641, intron 2 of 2)	9629	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
129447	chr2	69503971	69504330	+	0	NA	intron (NM_001371575, intron 16 of 20)	AluSz|SINE|Alu	16021	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
101791	chr17	73211451	73212350	+	0	NA	intron (NM_001289410, intron 1 of 1)	AluSx3|SINE|Alu	15817	NM_001289412	84923		NM_032837	ENSG00000133193	VCF1	FAM104A	VCP nuclear cofactor family member 1	protein-coding
151264	chr21	45373201	45373400	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-31310	NR_103811	388830		NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
127649	chr2	43152551	43152850	+	0	NA	Intergenic	Intergenic	-50255	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
101460	chr17	67460401	67460800	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSx|SINE|Alu	-10889	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
83410	chr16	27209971	27210330	+	0	NA	exon (NM_001145348, exon 2 of 8)	exon (NM_001145348, exon 2 of 8)	6175	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
49692	chr12	30822071	30822900	+	0	NA	Intergenic	CpG	26804	NR_040245	100287314		NR_040245		LINC00941	lncIAPF|lncRNA-MUF	long intergenic non-protein coding RNA 941	ncRNA
165548	chr3	101389371	101389530	+	0	NA	intron (NM_001282803, intron 3 of 20)	L1M2|LINE|L1	-68875	NM_016247	50939		NM_016247	ENSG00000081148	IMPG2	IPM200|RP56|SPACRCAN|VMD5	interphotoreceptor matrix proteoglycan 2	protein-coding
174988	chr4	49653171	49654130	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	667008	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
17488	chr1	156722271	156722580	+	0	NA	3' UTR (NM_001303095, exon 4 of 4)	3' UTR (NM_001303095, exon 4 of 4)	6014	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
181034	chr5	35884021	35885130	+	0	NA	Intergenic	Intergenic	27684	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
65383	chr14	50736701	50737630	+	0	NA	intron (NM_020921, intron 27 of 30)	MLT1F|LTR|ERVL-MaLR	-68859	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
236442	chrX	71539971	71540130	+	0	NA	intron (NM_181672, intron 3 of 21)	intron (NM_181672, intron 3 of 21)	6946	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
137372	chr2	196177721	196178730	+	0	NA	Intergenic	MIR|SINE|MIR	-6647	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
53233	chr12	62343951	62344450	+	0	NA	intron (NM_001351164, intron 6 of 21)	THE1B-int|LTR|ERVL-MaLR	83796	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
181301	chr5	40209271	40209630	+	0	NA	Intergenic	Intergenic	157159	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
95753	chr17	38603401	38603950	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	2277	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
99379	chr17	49965021	49965730	+	0	NA	Intergenic	CpG	-3815	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
146941	chr20	52054021	52054680	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	51134	NM_001319146	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
37035	chr11	12150621	12150880	+	0	NA	intron (NR_144417, intron 2 of 26)	intron (NR_144417, intron 2 of 26)	-11329	NM_001282667	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
210622	chr7	100443871	100444030	+	0	NA	Intergenic	AluJo|SINE|Alu	-7453	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
66611	chr14	63710601	63710800	+	0	NA	intron (NM_030791, intron 1 of 2)	intron (NM_030791, intron 1 of 2)	17365	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
227723	chr9	93050521	93051380	+	0	NA	Intergenic	Intergenic	-7738	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
98773	chr17	48125951	48126250	+	0	NA	Intergenic	Intergenic	18334	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
142037	chr20	1678921	1679180	+	0	NA	Intergenic	Intergenic	-21271	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
208195	chr7	65006121	65008080	+	0	NA	promoter-TSS (NM_001348050)	promoter-TSS (NM_001348050)	-354	NM_001348050	109504726		NM_001348050	ENSG00000152926	ERV3-1-ZNF117	h-PLK	ERV3-1-ZNF117 readthrough	protein-coding
20957	chr1	202314601	202314830	+	0	NA	intron (NM_021636, intron 16 of 17)	intron (NM_021636, intron 16 of 17)	27221	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
76296	chr15	74307871	74308180	+	0	NA	intron (NM_025055, intron 11 of 18)	MER115|DNA|hAT-Tip100	-10534	NM_001287181	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
77493	chr15	84604651	84605950	+	0	NA	intron (NM_181877, intron 2 of 2)	intron (NM_181877, intron 2 of 2)	4291	NM_017894	54993		NM_017894	ENSG00000176371	ZSCAN2	ZFP29|ZNF854	zinc finger and SCAN domain containing 2	protein-coding
31200	chr10	91224301	91224500	+	0	NA	intron (NM_032373, intron 2 of 9)	L2a|LINE|L2	3737	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
219811	chr8	81512471	81512630	+	0	NA	Intergenic	Intergenic	18840	NR_144370	646486		NM_001105281	ENSG00000197416	FABP12	-	fatty acid binding protein 12	protein-coding
189943	chr5	177399351	177400000	+	0	NA	TTS (NM_001029886)	TTS (NM_001029886)	986	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
58019	chr12	124392721	124393180	+	0	NA	intron (NM_001077261, intron 18 of 47)	intron (NM_001077261, intron 18 of 47)	-55708	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
91970	chr17	7403371	7405430	+	0	NA	promoter-TSS (NR_037719)	promoter-TSS (NR_037719)	-269	NR_037719	100529211		NR_037719		TMEM256-PLSCR3	C17orf61-PLSCR3|PLSCR3	TMEM256-PLSCR3 readthrough (NMD candidate)	ncRNA
96199	chr17	39755501	39756950	+	0	NA	Intergenic	Intergenic	16258	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
181978	chr5	55171621	55172420	+	0	NA	TTS (NR_031572)	TTS (NR_031572)	333	NR_031572	100313923		NR_031572	ENSG00000251856	MIR449C	mir-449c	microRNA 449c	ncRNA
80486	chr16	2708601	2708800	+	0	NA	3' UTR (NM_018992, exon 6 of 6)	3' UTR (NM_018992, exon 6 of 6)	11524	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
188337	chr5	151250921	151251780	+	0	NA	Intergenic	MER51A|LTR|ERV1	-1835	NM_000405	2760		NM_000405	ENSG00000196743	GM2A	GM2-AP|GM2AP|SAP-3	ganglioside GM2 activator	protein-coding
219536	chr8	76682071	76682580	+	0	NA	intron (NM_024721, intron 1 of 10)	CpG	950	NR_024360	100192378		NR_024360	ENSG00000253661	ZFHX4-AS1	-	ZFHX4 antisense RNA 1	ncRNA
18187	chr1	160833421	160834080	+	0	NA	intron (NM_001166664, intron 6 of 7)	intron (NM_001166664, intron 6 of 7)	29137	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
202431	chr6	157963321	157963850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18278	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
228432	chr9	99824501	99825030	+	0	NA	intron (NM_173200, intron 1 of 8)	CpG-28596	2880	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
150036	chr21	37364651	37364950	+	0	NA	promoter-TSS (NM_001396)	promoter-TSS (NM_001396)	-773	NM_001396	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
227624	chr9	92804151	92804450	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	3787	NR_136301	101929748		NR_136301	ENSG00000288062	LOC101929748	-	uncharacterized LOC101929748	ncRNA
180266	chr5	1783121	1783380	+	0	NA	Intergenic	Intergenic	16587	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
70701	chr14	103220501	103220830	+	0	NA	Intergenic	CpG	-31637	NR_033938	100131366		NR_033938	ENSG00000251533	LINC00605	-	long intergenic non-protein coding RNA 605	ncRNA
172329	chr4	1686521	1688550	+	0	NA	Intergenic	AluSg4|SINE|Alu	-3222	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
130608	chr2	85928571	85929080	+	0	NA	Intergenic	LTR12D|LTR|ERV1	39545	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
85578	chr16	53488721	53488980	+	0	NA	intron (NM_001323609, intron 20 of 20)	intron (NM_001323609, intron 20 of 20)	14359	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
62628	chr13	100676951	100677250	+	0	NA	Intergenic	L1PA6|LINE|L1	-2305	NM_001350576	84899		NM_032813	ENSG00000125247	TMTC4	DFNB122	transmembrane O-mannosyltransferase targeting cadherins 4	protein-coding
51163	chr12	50188671	50189430	+	0	NA	intron (NM_001113547, intron 6 of 7)	intron (NM_001113547, intron 6 of 7)	12483	NM_001243775	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
200890	chr6	138987371	138988700	+	0	NA	5' UTR (NM_001128617, exon 1 of 19)	5' UTR (NM_001128617, exon 1 of 19)	218	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
224076	chr9	4243151	4243450	+	0	NA	intron (NM_001042413, intron 2 of 10)	intron (NM_001042413, intron 2 of 10)	56768	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
108945	chr18	79502971	79503330	+	0	NA	intron (NM_172387, intron 9 of 9)	L1MB8|LINE|L1	-76132	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
20435	chr1	198465521	198465800	+	0	NA	Intergenic	Intergenic	75020	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
162727	chr3	49020001	49020600	+	0	NA	promoter-TSS (NR_029948)	promoter-TSS (NR_029948)	-66	NR_029948	494337		NR_029948	ENSG00000199032	MIR425	MIRN425|hsa-mir-425|mir-425	microRNA 425	ncRNA
147139	chr20	56248051	56248230	+	0	NA	promoter-TSS (NM_019888)	promoter-TSS (NM_019888)	-592	NM_019888	4159		NM_019888	ENSG00000124089	MC3R	BMIQ9|MC3|MC3-R|OB20|OQTL	melanocortin 3 receptor	protein-coding
24057	chr1	235304321	235305830	+	0	NA	intron (NM_016374, intron 2 of 23)	MLT1D|LTR|ERVL-MaLR	-22141	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
168071	chr3	138082271	138082830	+	0	NA	intron (NM_173543, intron 8 of 15)	MLT1O|LTR|ERVL-MaLR	30930	NM_001170538	199221		NM_173543	ENSG00000158163	DZIP1L	DZIP2|PKD5	DAZ interacting zinc finger protein 1 like	protein-coding
135831	chr2	170651401	170652400	+	0	NA	intron (NR_045682, intron 34 of 35)	intron (NR_045682, intron 34 of 35)	62667	NR_027433	440925		NM_001013712	ENSG00000222033	LINC01124	-	long intergenic non-protein coding RNA 1124	ncRNA
217921	chr8	38067001	38067580	+	0	NA	Intergenic	Intergenic	36756	NM_004095	1978		NM_004095	ENSG00000187840	EIF4EBP1	4E-BP1|4EBP1|BP-1|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding
6530	chr1	28572851	28574450	+	0	NA	intron (NM_017846, intron 8 of 8)	AluSx|SINE|Alu	5172	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	small nucleolar RNA, C/D box 99	snoRNA
2946	chr1	11896601	11897200	+	0	NA	Intergenic	AluY|SINE|Alu	-11254	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
13085	chr1	111582401	111582880	+	0	NA	intron (NM_001370216, intron 1 of 7)	intron (NM_001370216, intron 1 of 7)	-18637	NM_001302680	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
130958	chr2	87524471	87524900	+	0	NA	Intergenic	Intergenic	54735	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
116134	chr19	17336801	17338180	+	0	NA	promoter-TSS (NM_032620)	promoter-TSS (NM_032620)	-63	NM_032620	84705		NM_032620	ENSG00000130299	GTPBP3	COXPD23|GTPBG3|MSS1|MTGP1|THDF1	GTP binding protein 3, mitochondrial	protein-coding
134390	chr2	136381851	136383200	+	0	NA	Intergenic	Intergenic	-264376	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
156668	chr22	41649271	41649430	+	0	NA	intron (NM_001288976, intron 7 of 12)	AluJo|SINE|Alu	28055	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
135516	chr2	162057251	162058200	+	0	NA	intron (NR_166824, intron 2 of 25)	LTR50|LTR|ERVL	16490	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
237973	chrX	134026751	134026850	+	0	NA	Intergenic	Intergenic	-41206	NM_001164618	2719		NM_004484	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
165989	chr3	108092811	108094280	+	0	NA	Intergenic	Intergenic	-2514	NM_001777	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
174549	chr4	40208751	40208850	+	0	NA	intron (NM_001278362, intron 2 of 3)	intron (NM_001278362, intron 2 of 3)	11769	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
113940	chr19	10747351	10750150	+	0	NA	intron (NM_001005362, intron 1 of 19)	MIRc|SINE|MIR	30346	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
225763	chr9	37304421	37304830	+	0	NA	intron (NM_001289119, intron 4 of 8)	AluY|SINE|Alu	-118071	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
84309	chr16	30097821	30098100	+	0	NA	intron (NR_135192, intron 1 of 1)	HERVIP10B3-int|LTR|ERV1	1530	NR_135192	101928595		NR_135192	ENSG00000250616	YPEL3-DT	-	YPEL3 divergent transcript	ncRNA
4890	chr1	23795051	23796530	+	0	NA	TTS (NM_007260)	TTS (NM_007260)	3757	NM_001127621	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
77738	chr15	85741151	85741650	+	0	NA	exon (NM_001270546, exon 27 of 29)	exon (NM_001270546, exon 27 of 29)	17325	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
211723	chr7	106901701	106902100	+	0	NA	intron (NM_001282426, intron 10 of 10)	L1PREC2|LINE|L1	36421	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
205682	chr7	23183071	23183230	+	0	NA	intron (NM_007342, intron 1 of 6)	intron (NM_007342, intron 1 of 6)	1102	NM_001370444	11097		NM_007342	ENSG00000136243	NUP42	CG1|NLP-1|NLP1|NLP_1|NUPL2|UIP1|hCG1	nucleoporin 42	protein-coding
231771	chr9	132244721	132245350	+	0	NA	TTS (NM_032536)	TTS (NM_032536)	82977	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
27898	chr10	41885801	41886400	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	481945	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
88445	chr16	84916321	84916580	+	0	NA	Intergenic	LTR62|LTR|ERVL	95085	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
201258	chr6	144147501	144148400	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	-2567	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
32049	chr10	101047371	101047530	+	0	NA	Intergenic	Intergenic	-14539	NR_135067	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
183809	chr5	82512151	82512250	+	0	NA	Intergenic	LTR79|LTR|ERVL	232738	NM_001017971	92270		NM_001017971		ATP6AP1L	-	ATPase H+ transporting accessory protein 1 like (pseudogene)	pseudo
188441	chr5	154469771	154470330	+	0	NA	Intergenic	Intergenic	8177	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
215855	chr8	7258851	7258950	+	0	NA	Intergenic	Intergenic	4592	NR_027000	349196		NM_001025473		LINC00965	-	long intergenic non-protein coding RNA 965	ncRNA
61683	chr13	74029671	74029830	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	104179	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
193225	chr6	29849901	29850600	+	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	22425	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
75845	chr15	69481001	69481200	+	0	NA	Intergenic	AluJr|SINE|Alu	28282	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
6811	chr1	30915821	30916280	+	0	NA	Intergenic	AluJb|SINE|Alu	-7292	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
99671	chr17	50729321	50729680	+	0	NA	intron (NM_001330330, intron 1 of 10)	MER6|DNA|TcMar-Tigger	9897	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
83657	chr16	28321421	28322300	+	0	NA	3' UTR (NM_001024401, exon 4 of 4)	3' UTR (NM_001024401, exon 4 of 4)	29335	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
27191	chr10	28561771	28562450	+	0	NA	intron (NM_100486, intron 3 of 12)	AluSz|SINE|Alu	28992	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
77569	chr15	84983571	84984050	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	1836	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
207392	chr7	44212751	44212850	+	0	NA	3' UTR (NM_001363678, exon 6 of 6)	3' UTR (NM_001363678, exon 6 of 6)	11822	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
219732	chr8	81045601	81046200	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	66168	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
52763	chr12	56668701	56668900	+	0	NA	intron (NM_001282602, intron 4 of 6)	intron (NM_001282602, intron 4 of 6)	19484	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
108671	chr18	76827351	76827650	+	0	NA	intron (NM_007345, intron 1 of 30)	L2b|LINE|L2	3740	NM_007345	7776		NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
172590	chr4	2479471	2479630	+	0	NA	intron (NM_001185009, intron 2 of 8)	THE1B|LTR|ERVL-MaLR	10097	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
122672	chr19	49875771	49876900	+	0	NA	promoter-TSS (NM_001278159)	promoter-TSS (NM_001278159)	-86	NM_001278159	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
170416	chr3	185584071	185584580	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	-1970	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
202223	chr6	156807001	156807400	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-27469	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
28573	chr10	50741501	50742200	+	0	NA	intron (NM_001321959, intron 1 of 5)	L2c|LINE|L2	1914	NM_001321960	653308		NM_001079516	ENSG00000204147	ASAH2B	ASAH2C|ASAH2L|bA449O16.3|bA98I6.3	N-acylsphingosine amidohydrolase 2B	protein-coding
92840	chr17	16213301	16213800	+	0	NA	intron (NM_006311, intron 1 of 45)	intron (NM_006311, intron 1 of 45)	1984	NM_006311	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
132349	chr2	105741601	105742600	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2812	NM_003581	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
166814	chr3	122678201	122678530	+	0	NA	Intergenic	Intergenic	-2474	NM_017554	54625		NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	poly(ADP-ribose) polymerase family member 14	protein-coding
14636	chr1	145471471	145472130	+	0	NA	Intergenic	Intergenic	-66022	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
202347	chr6	157569521	157570100	+	0	NA	intron (NM_024630, intron 2 of 8)	L1ME4a|LINE|L1	40678	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
186692	chr5	138666051	138666430	+	0	NA	Intergenic	Intergenic	87069	NR_134245	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
211624	chr7	106040921	106041830	+	0	NA	Intergenic	Intergenic	70937	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
212758	chr7	129937921	129938180	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	14910	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
147248	chr20	57422751	57423050	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-29844	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
225664	chr9	36459101	36459780	+	0	NA	Intergenic	Intergenic	-58242	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
134529	chr2	143655051	143655350	+	0	NA	intron (NM_018460, intron 12 of 13)	L1PB1|LINE|L1	-281867	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
204527	chr7	4802171	4802680	+	0	NA	intron (NM_018059, intron 11 of 14)	intron (NM_018059, intron 11 of 14)	-13786	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
76761	chr15	76974451	76974830	+	0	NA	Intergenic	Intergenic	-20040	NM_001321137	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
135712	chr2	169034401	169034630	+	0	NA	Intergenic	Intergenic	-3191	NM_003742	8647		NM_003742	ENSG00000073734	ABCB11	ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP	ATP binding cassette subfamily B member 11	protein-coding
213190	chr7	132488821	132489230	+	0	NA	intron (NM_181775, intron 4 of 4)	intron (NM_181775, intron 4 of 4)	87445	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
43018	chr11	73993271	73994300	+	0	NA	Intergenic	AluSz|SINE|Alu	-10583	NM_001381944	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
221921	chr8	129682021	129682430	+	0	NA	Intergenic	Intergenic	-1986	NR_130917	137196		NR_130917	ENSG00000229140	CCDC26	GLM7|RAM	CCDC26 long non-coding RNA	ncRNA
54222	chr12	79930071	79930230	+	0	NA	intron (NM_001143885, intron 2 of 25)	intron (NM_001143885, intron 2 of 25)	4801	NM_001244992	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
3337	chr1	15431021	15432280	+	0	NA	Intergenic	AluJr|SINE|Alu	-6793	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
215961	chr8	8568971	8569330	+	0	NA	Intergenic	Intergenic	-132787	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
113696	chr19	10414001	10414580	+	0	NA	Intergenic	AluYj4|SINE|Alu	-2483	NM_001243121	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
153616	chr22	28440471	28440830	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-19219	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
48983	chr12	13100521	13102400	+	0	NA	TTS (NR_159953)	TTS (NR_159953)	2207	NM_001367364	83445		NM_031289	ENSG00000111305	GSG1	-	germ cell associated 1	protein-coding
145076	chr20	38645221	38645480	+	0	NA	intron (NM_001164431, intron 11 of 14)	intron (NM_001164431, intron 11 of 14)	43541	NM_001164431	343578		NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
496	chr1	1179021	1179680	+	0	NA	promoter-TSS (NM_153254)	promoter-TSS (NM_153254)	-331	NM_153254	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
167435	chr3	129052021	129052280	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-8629	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
141153	chr2	239252751	239253050	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-52562	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
91734	chr17	6660671	6661250	+	0	NA	intron (NR_045985, intron 4 of 4)	intron (NR_045985, intron 4 of 4)	3241	NR_045985	100652883		NR_045985		ALOX15P1	ALOX15P	arachidonate 15-lipoxygenase pseudogene 1	pseudo
206654	chr7	36279421	36279880	+	0	NA	intron (NM_030636, intron 3 of 7)	intron (NM_030636, intron 3 of 7)	87590	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
132043	chr2	101008521	101009150	+	0	NA	intron (NM_001330348, intron 19 of 19)	intron (NM_001330348, intron 19 of 19)	6546	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
23001	chr1	226123751	226123850	+	0	NA	Intergenic	Intergenic	-24203	NR_146443	107985353		NR_146443	ENSG00000234478	ACBD3-AS1	-	ACBD3 antisense RNA 1	ncRNA
8726	chr1	42661021	42661450	+	0	NA	intron (NM_006347, intron 5 of 9)	intron (NM_006347, intron 5 of 9)	2812	NM_001330510	10465		NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H	protein-coding
130345	chr2	85002671	85003030	+	0	NA	intron (NM_020122, intron 1 of 6)	L3|LINE|CR1	31689	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
136202	chr2	174568971	174569850	+	0	NA	intron (NM_001375839, intron 4 of 6)	intron (NM_001375839, intron 4 of 6)	-11338	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
143785	chr20	32448451	32449030	+	0	NA	intron (NM_080616, intron 7 of 7)	intron (NM_080616, intron 7 of 7)	34750	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
130870	chr2	87405951	87406050	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-49427	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
199956	chr6	127924221	127924950	+	0	NA	Intergenic	L2a|LINE|L2	-5954	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
118747	chr19	38333901	38334400	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-1680	NM_001330496	57828		NM_021185	ENSG00000099338	CATSPERG	C19orf15	cation channel sperm associated auxiliary subunit gamma	protein-coding
204370	chr7	2960751	2961050	+	0	NA	intron (NM_032415, intron 1 of 24)	AluYb8|SINE|Alu	82967	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
39325	chr11	59142201	59143430	+	0	NA	promoter-TSS (NR_110184)	promoter-TSS (NR_110184)	-7	NR_110184	101927204		NR_110184	ENSG00000245571	FAM111A-DT	-	FAM111A divergent transcript	ncRNA
25553	chr10	7481801	7482000	+	0	NA	Intergenic	Intergenic	-70414	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
33793	chr10	123141471	123141830	+	0	NA	Intergenic	Intergenic	5680	NM_001105574	340784		NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
150262	chr21	41764871	41765430	+	0	NA	intron (NM_020639, intron 1 of 7)	intron (NM_020639, intron 1 of 7)	1902	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
206904	chr7	37916251	37917380	+	0	NA	promoter-TSS (NM_003014)	promoter-TSS (NM_003014)	2	NM_003014	6424		NM_003014	ENSG00000106483	SFRP4	FRP-4|FRPHE|FRZB-2|PYL|sFRP-4	secreted frizzled related protein 4	protein-coding
204845	chr7	5779001	5779200	+	0	NA	intron (NM_001377156, intron 1 of 17)	MIR|SINE|MIR	2563	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
37258	chr11	14648001	14648200	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	4296	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
180032	chr5	1052821	1053830	+	0	NA	intron (NM_006598, intron 23 of 23).2	intron (NM_006598, intron 23 of 23).2	9649	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
153134	chr22	23753151	23754000	+	0	NA	intron (NM_013378, intron 1 of 1)	intron (NM_013378, intron 1 of 1)	850	NM_013378	29802		NM_013378	ENSG00000128218	VPREB3	8HS20|N27C7-2	V-set pre-B cell surrogate light chain 3	protein-coding
108358	chr18	67513151	67513900	+	0	NA	exon (NM_032160, exon 2 of 2)	exon (NM_032160, exon 2 of 2)	-3021	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
6160	chr1	27404901	27405650	+	0	NA	3' UTR (NM_001201404, exon 8 of 8)	3' UTR (NM_001201404, exon 8 of 8)	12653	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
41780	chr11	66847171	66848130	+	0	NA	TTS (NM_000920)	TTS (NM_000920)	4209	NM_001032279	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
107993	chr18	58674771	58674930	+	0	NA	intron (NM_173844, intron 1 of 15)	intron (NM_173844, intron 1 of 15)	-2977	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
229207	chr9	114777921	114778180	+	0	NA	Intergenic	L2c|LINE|L2	14480	NM_001204344	9966		NM_005118	ENSG00000181634	TNFSF15	TL1|TL1A|TNLG1B|VEGI|VEGI192A	TNF superfamily member 15	protein-coding
113668	chr19	10387571	10388200	+	0	NA	Intergenic	AluY|SINE|Alu	-7313	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
39473	chr11	60991471	60992700	+	0	NA	intron (NM_006725, intron 1 of 12)	AluJo|SINE|Alu	20405	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
199606	chr6	119315721	119316200	+	0	NA	intron (NM_005907, intron 2 of 12)	intron (NM_005907, intron 2 of 12)	33801	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
234544	chrX	19698571	19698930	+	0	NA	intron (NM_001353892, intron 4 of 17)	intron (NM_001353892, intron 4 of 17)	-27751	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
207143	chr7	43303871	43304030	+	0	NA	intron (NM_001287059, intron 2 of 27)	intron (NM_001287059, intron 2 of 27)	153055	NR_037508	100500829		NR_037508	ENSG00000264069	MIR3943	-	microRNA 3943	ncRNA
216228	chr8	12185071	12185430	+	0	NA	promoter-TSS (NR_146925)	promoter-TSS (NR_146925)	-486	NR_146925	619423		NR_146925		FAM85A	-	family with sequence similarity 85 member A	ncRNA
177338	chr4	109977901	109978130	+	0	NA	intron (NM_001963, intron 13 of 23)	intron (NM_001963, intron 13 of 23)	65132	NM_001178131	1950		NM_001963	ENSG00000138798	EGF	HOMG4|URG	epidermal growth factor	protein-coding
181850	chr5	53089551	53090200	+	0	NA	intron (NR_073104, intron 27 of 28)	MIR3|SINE|MIR	19882	NM_004531	4338		NM_004531	ENSG00000164172	MOCS2	MCBPE|MOCO1|MOCODB|MPTS	molybdenum cofactor synthesis 2	protein-coding
129331	chr2	68742201	68742850	+	0	NA	intron (NM_001364821, intron 1 of 10)	MIR|SINE|MIR	7148	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
59278	chr13	24228901	24229550	+	0	NA	intron (NM_001166271, intron 2 of 12)	intron (NM_001166271, intron 2 of 12)	25214	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
210457	chr7	100124271	100124630	+	0	NA	intron (NM_152755, intron 4 of 5)	intron (NM_152755, intron 4 of 5)	-2517	NM_203397	255374		NM_203397	ENSG00000214309	MBLAC1	-	metallo-beta-lactamase domain containing 1	protein-coding
129004	chr2	64831301	64832330	+	0	NA	Intergenic	LFSINE_Vert|SINE|tRNA	31816	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
66319	chr14	61417951	61418050	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	96557	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
209550	chr7	77276021	77276300	+	0	NA	intron (NM_020879, intron 11 of 18)	AluSx1|SINE|Alu	-76341	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
56256	chr12	112003351	112003830	+	0	NA	intron (NM_138341, intron 2 of 9)	intron (NM_138341, intron 2 of 9)	9575	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
119051	chr19	39074671	39074830	+	0	NA	Intergenic	AluSx|SINE|Alu	-9618	NM_001363687	390928		NM_001004318	ENSG00000183760	ACP7	PAPL|PAPL1	acid phosphatase 7, tartrate resistant (putative)	protein-coding
142128	chr20	2696521	2696780	+	0	NA	intron (NR_138537, intron 2 of 17)	intron (NR_138537, intron 2 of 17)	3772	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
206753	chr7	36686371	36687130	+	0	NA	exon (NM_001637, exon 2 of 21)	exon (NM_001637, exon 2 of 21)	37744	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
99520	chr17	50297301	50297980	+	0	NA	Intergenic	Intergenic	-9785	NR_125805	103752589		NR_125805	ENSG00000251179	TMEM92-AS1	TCONS_00025237|lncRNA-508851	TMEM92 antisense RNA 1	ncRNA
57453	chr12	121916651	121917330	+	0	NA	non-coding (NR_048555, exon 5 of 5)	non-coding (NR_048555, exon 5 of 5)	-1602	NM_144668	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
187354	chr5	141694921	141695180	+	0	NA	Intergenic	MIR|SINE|MIR	-12820	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
29637	chr10	71837121	71837380	+	0	NA	intron (NM_002778, intron 1 of 13)	intron (NM_002778, intron 1 of 13)	14001	NM_002778	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
19744	chr1	181179801	181180550	+	0	NA	intron (NR_125966, intron 2 of 2)	intron (NR_125966, intron 2 of 2)	5691	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
54675	chr12	93393671	93394030	+	0	NA	intron (NM_001301023, intron 1 of 4)	MIRb|SINE|MIR	15272	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
146675	chr20	50515551	50515880	+	0	NA	intron (NM_001278618, intron 1 of 8)	L2c|LINE|L2	5332	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138175	chr2	202644721	202645230	+	0	NA	intron (NM_173511, intron 1 of 7)	HAL1|LINE|L1	10006	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
13959	chr1	120388721	120389830	+	0	NA	Intergenic	Intergenic	-25752	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
47415	chr12	2944601	2944900	+	0	NA	Intergenic	Intergenic	-14647	NM_201441	7004		NM_003213	ENSG00000197905	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain transcription factor 4	protein-coding
120480	chr19	44746941	44747900	+	0	NA	Intergenic	Intergenic	-1288	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
111649	chr19	4199121	4199380	+	0	NA	intron (NM_133475, intron 2 of 21)	intron (NM_133475, intron 2 of 21)	15896	NM_133475	170961		NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
74184	chr15	55526501	55526950	+	0	NA	Intergenic	L1PA15|LINE|L1	-18491	NM_130810	161582		NM_130810	ENSG00000256061	DNAAF4	CILD25|DYX1|DYX1C1|DYXC1|EKN1|RD|pf23	dynein axonemal assembly factor 4	protein-coding
54714	chr12	93465221	93465780	+	0	NA	Intergenic	Intergenic	-2014	NR_038161	28977		NM_014050	ENSG00000198015	MRPL42	HSPC204|L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT|mL42	mitochondrial ribosomal protein L42	protein-coding
232324	chr9	134851971	134852130	+	0	NA	intron (NR_103451, intron 1 of 1)	intron (NR_103451, intron 1 of 1)	-1243	NR_039696	100616212		NR_039696	ENSG00000266514	MIR3689F	mir-3689f	microRNA 3689f	ncRNA
67998	chr14	74955171	74956330	+	0	NA	promoter-TSS (NM_001293643)	promoter-TSS (NM_001293643)	14	NM_001293643	5228		NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
81567	chr16	9131371	9132000	+	0	NA	Intergenic	AluSc8|SINE|Alu	40041	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
7333	chr1	32712051	32712900	+	0	NA	Intergenic	CpG	-9705	NM_001161708	81493		NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
7285	chr1	32388071	32388230	+	0	NA	intron (NM_018045, intron 2 of 10)	intron (NM_018045, intron 2 of 10)	6291	NM_018045	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
194388	chr6	32993721	32993980	+	0	NA	Intergenic	Intergenic	15741	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
174772	chr4	47798101	47798300	+	0	NA	intron (NM_006587, intron 2 of 21)	intron (NM_006587, intron 2 of 21)	-33145	NR_125880	101927179		NR_125880	ENSG00000282917	LOC101927179	-	uncharacterized LOC101927179	ncRNA
56776	chr12	120181621	120181880	+	0	NA	intron (NM_006836, intron 5 of 57)	AluSp|SINE|Alu	12965	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
186918	chr5	139596871	139597430	+	0	NA	intron (NM_181838, intron 2 of 7)	L1ME1|LINE|L1	35811	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
47632	chr12	6195471	6196250	+	0	NA	Intergenic	Intergenic	-4086	NM_001330312	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
18681	chr1	167267371	167268380	+	0	NA	intron (NM_001365848, intron 2 of 17)	AluY|SINE|Alu	46989	NM_002697	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
156647	chr22	41630301	41630580	+	0	NA	intron (NM_001288977, intron 3 of 12)	intron (NM_001288977, intron 3 of 12)	9145	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
46907	chr11	134224401	134225100	+	0	NA	promoter-TSS (NM_001372065)	promoter-TSS (NM_001372065)	79	NM_052875	112936		NM_052875	ENSG00000151502	VPS26B	Pep8b	VPS26 retromer complex component B	protein-coding
67064	chr14	67856701	67857130	+	0	NA	intron (NM_133509, intron 4 of 10)	intron (NM_133509, intron 4 of 10)	33323	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
222090	chr8	130428171	130428630	+	0	NA	intron (NM_001362924, intron 1 of 30)	intron (NM_001362924, intron 1 of 30)	15260	NM_001362924	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
59758	chr13	30113971	30114130	+	0	NA	Intergenic	Intergenic	-5175	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
118592	chr19	36526751	36527050	+	0	NA	intron (NM_001375597, intron 1 of 3)	intron (NM_001375597, intron 1 of 3)	1371	NM_001375597	339324		NM_001012756	ENSG00000254004	ZNF260	OZRF1|PEX1|ZFP260	zinc finger protein 260	protein-coding
158512	chr3	3132701	3132980	+	0	NA	intron (NM_182916, intron 2 of 7)	intron (NM_182916, intron 2 of 7)	5900	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
129837	chr2	72833171	72833540	+	0	NA	Intergenic	MER83C|LTR|ERV1	-7322	NR_135773	23233		NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2|SEMDJL3	exocyst complex component 6B	protein-coding
21476	chr1	205630351	205630450	+	0	NA	intron (NM_021795, intron 1 of 2)	intron (NM_021795, intron 1 of 2)	1611	NM_001973	2005		NM_001973	ENSG00000158711	ELK4	SAP1	ETS transcription factor ELK4	protein-coding
63973	chr14	22177871	22178480	+	0	NA	Intergenic	Intergenic	254578	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
166200	chr3	111858171	111858330	+	0	NA	promoter-TSS (NM_145753)	promoter-TSS (NM_145753)	-930	NM_145753	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
24441	chr1	243713621	243713980	+	0	NA	intron (NM_005465, intron 2 of 13)	intron (NM_005465, intron 2 of 13)	129482	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
145343	chr20	41138601	41139350	+	0	NA	promoter-TSS (NR_109889)	promoter-TSS (NR_109889)	-975	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
66117	chr14	60093521	60093780	+	0	NA	intron (NM_022495, intron 1 of 9)	L1MB8|LINE|L1	1727	NM_001330177	64430		NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex 4	protein-coding
160872	chr3	33438121	33438630	+	0	NA	intron (NM_014517, intron 1 of 15)	intron (NM_014517, intron 1 of 15)	2003	NM_001128160	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
65344	chr14	50318001	50318200	+	0	NA	intron (NM_001382507, intron 2 of 5)	L1PB1|LINE|L1	5776	NM_015684	27109		NM_015684	ENSG00000125375	DMAC2L	ATP5S|ATPW|FB|HSU79253	distal membrane arm assembly component 2 like	protein-coding
132376	chr2	105768571	105768980	+	0	NA	intron (NM_001004722, intron 1 of 3)	MER30|DNA|hAT-Charlie	23712	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
236832	chrX	79196901	79197300	+	0	NA	Intergenic	L1PA7|LINE|L1	52412	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
37941	chr11	34339201	34339400	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	18710	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
151582	chr21	46634171	46634330	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-1345	NM_001286677	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
145227	chr20	38918851	38919350	+	0	NA	3' UTR (NM_015568, exon 11 of 11)	3' UTR (NM_015568, exon 11 of 11)	-7317	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
86200	chr16	57996251	57996830	+	0	NA	exon (NM_001384367, exon 3 of 3)	exon (NM_001384367, exon 3 of 3)	-3063	NM_001330568	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
62827	chr13	109770051	109770880	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	16118	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
110240	chr19	1778771	1779130	+	0	NA	3' UTR (NM_001080488, exon 2 of 2)	3' UTR (NM_001080488, exon 2 of 2)	25444	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
185175	chr5	119356921	119357180	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	1031	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
190925	chr6	2862701	2863280	+	0	NA	intron (NR_033851, intron 1 of 1)	intron (NR_033851, intron 1 of 1)	-8883	NR_039788	100616285		NR_039788	ENSG00000266750	MIR4645	mir-4645	microRNA 4645	ncRNA
22715	chr1	224169971	224170130	+	0	NA	Intergenic	Intergenic	-13190	NM_001321541	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
91472	chr17	4886121	4886380	+	0	NA	intron (NM_015716, intron 9 of 30)	intron (NM_015716, intron 9 of 30)	-13286	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
129496	chr2	69622351	69622450	+	0	NA	intron (NM_001371577, intron 2 of 14)	LTR12C|LTR|ERV1	21338	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
192194	chr6	17697321	17697930	+	0	NA	intron (NM_001278209, intron 1 of 22)	AluSx1|SINE|Alu	-8505	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
37778	chr11	32333221	32333750	+	0	NA	Intergenic	CpG	66915	NM_001367854	7490		NM_000378	ENSG00000184937	WT1	AWT1|GUD|NPHS4|WAGR|WIT-2|WT-1|WT33	WT1 transcription factor	protein-coding
22674	chr1	223824621	223825080	+	0	NA	intron (NM_001031685, intron 1 of 17)	L2a|LINE|L2	21097	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
77820	chr15	88628471	88628630	+	0	NA	intron (NM_022767, intron 2 of 3)	intron (NM_022767, intron 2 of 3)	-7082	NR_130134	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
166081	chr3	108913121	108913380	+	0	NA	intron (NM_005459, intron 3 of 3)	intron (NM_005459, intron 3 of 3)	40596	NM_001363884	9626		NM_005459	ENSG00000138472	GUCA1C	GCAP3	guanylate cyclase activator 1C	protein-coding
58340	chr12	131537421	131537680	+	0	NA	Intergenic	Intergenic	110571	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
217558	chr8	29366071	29366230	+	0	NA	Intergenic	Intergenic	-15466	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
228842	chr9	112179801	112180700	+	0	NA	Intergenic	Intergenic	-4953	NM_001282643	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
46336	chr11	125513301	125513600	+	0	NA	Intergenic	AluJb|SINE|Alu	-17140	NM_022549	9638		NM_005103	ENSG00000149557	FEZ1	UNC-76	fasciculation and elongation protein zeta 1	protein-coding
196231	chr6	42840971	42841330	+	0	NA	intron (NM_015349, intron 5 of 11)	intron (NM_015349, intron 5 of 11)	20094	NM_015349	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
211170	chr7	102585171	102585950	+	0	NA	intron (NM_001079877, intron 17 of 19)	intron (NM_001079877, intron 17 of 19)	-12939	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
202841	chr6	159754951	159755480	+	0	NA	exon (NM_004906, exon 8 of 8)	exon (NM_004906, exon 8 of 8)	-6830	NM_005891	39		NM_005891	ENSG00000120437	ACAT2	-	acetyl-CoA acetyltransferase 2	protein-coding
130521	chr2	85609071	85609980	+	0	NA	exon (NM_001013649, exon 3 of 4)	exon (NM_001013649, exon 3 of 4)	2541	NM_001013649	388969		NM_001013649	ENSG00000168887	C2orf68	HCRCN81	chromosome 2 open reading frame 68	protein-coding
195787	chr6	40791001	40791300	+	0	NA	Intergenic	Intergenic	-203786	NM_020737	57497		NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
111676	chr19	4259601	4260300	+	0	NA	intron (NM_018074, intron 5 of 7)	intron (NM_018074, intron 5 of 7)	12870	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
110573	chr19	2148501	2149130	+	0	NA	intron (NM_001374799, intron 1 of 31)	intron (NM_001374799, intron 1 of 31)	2751	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
10163	chr1	61075121	61075680	+	0	NA	Intergenic	Intergenic	-1827	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
64210	chr14	23054251	23055030	+	0	NA	exon (NM_022478, exon 5 of 14)	exon (NM_022478, exon 5 of 14)	2898	NM_144985	64403		NM_022478	ENSG00000139880	CDH24	CDH11L	cadherin 24	protein-coding
165567	chr3	101530421	101530930	+	0	NA	Intergenic	LTR19C|LTR|ERV1	11808	NR_036433	131909		NR_036433		ARB2BP	FAM172B|FAM172BP	ARB2 family member B, pseudogene	pseudo
177790	chr4	123288651	123288950	+	0	NA	intron (NM_001345856, intron 15 of 15)	L3|LINE|CR1	-107995	NM_001258038	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
99869	chr17	56594601	56595200	+	0	NA	exon (NM_005450, exon 1 of 1)	exon (NM_005450, exon 1 of 1)	1201	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
55007	chr12	96367751	96368730	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	32199	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
192929	chr6	27743751	27744050	+	0	NA	Intergenic	Intergenic	-17844	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
177461	chr4	113677351	113678050	+	0	NA	intron (NM_001321581, intron 2 of 19)	intron (NM_001321581, intron 2 of 19)	84038	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
168893	chr3	152318651	152318830	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	19726	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
135441	chr2	161185571	161185930	+	0	NA	intron (NM_133484, intron 2 of 3)	L1PA2|LINE|L1	25322	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
129468	chr2	69576051	69576450	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-56079	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
45563	chr11	118791701	118792500	+	0	NA	promoter-TSS (NM_004397)	promoter-TSS (NM_004397)	-936	NM_004397	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
22927	chr1	225929721	225930180	+	0	NA	Intergenic	AluSx|SINE|Alu	-5610	NM_001271681	29920		NM_013328	ENSG00000143811	PYCR2	HLD10|P5CR2	pyrroline-5-carboxylate reductase 2	protein-coding
30507	chr10	79321971	79322130	+	0	NA	Intergenic	Intergenic	-25419	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
175233	chr4	56971571	56971730	+	0	NA	intron (NM_032313, intron 3 of 6)	intron (NM_032313, intron 3 of 6)	5956	NM_032313	84273		NM_032313	ENSG00000084092	NOA1	C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1	nitric oxide associated 1	protein-coding
83912	chr16	29009001	29010630	+	0	NA	Intergenic	Intergenic	24763	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
16735	chr1	155259301	155259700	+	0	NA	intron (NM_052837, intron 3 of 7).2	AluJo|SINE|Alu	2860	NM_052837	10067		NM_005698	ENSG00000116521	SCAMP3	C1orf3	secretory carrier membrane protein 3	protein-coding
79433	chr16	704371	704800	+	0	NA	intron (NM_153350, intron 1 of 5)	intron (NM_153350, intron 1 of 5)	1216	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
23873	chr1	234842821	234843630	+	0	NA	Intergenic	Intergenic	-83169	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
165710	chr3	102223101	102223650	+	0	NA	Intergenic	L1P3|LINE|L1	59670	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
39060	chr11	47963921	47964180	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-16509	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
181782	chr5	50751001	50751480	+	0	NA	intron (NM_024615, intron 3 of 25)	intron (NM_024615, intron 3 of 25)	83826	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
176106	chr4	83011751	83012050	+	0	NA	intron (NM_001115007, intron 1 of 12)	intron (NM_001115007, intron 1 of 12)	1041	NM_001115007	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
152354	chr22	20456201	20457150	+	0	NA	intron (NR_033825, intron 4 of 5)	intron (NR_033825, intron 4 of 5)	-18850	NM_182895	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
8247	chr1	39767221	39767480	+	0	NA	intron (NM_001720, intron 3 of 6)	intron (NM_001720, intron 3 of 6)	3998	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
40749	chr11	64835971	64836350	+	0	NA	exon (NM_017525, exon 13 of 37)	exon (NM_017525, exon 13 of 37)	8493	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
69547	chr14	96512621	96513130	+	0	NA	intron (NM_001293628, intron 1 of 21)	intron (NM_001293628, intron 1 of 21)	10010	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
60658	chr13	42988851	42989600	+	0	NA	intron (NM_033255, intron 1 of 10)	intron (NM_033255, intron 1 of 10)	3016	NM_033255	94240		NM_033255	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1	protein-coding
145192	chr20	38884271	38884430	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-42067	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
233460	chr9	137669051	137669880	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	50460	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
233791	chrX	1443551	1443950	+	0	NA	intron (NM_001173473, intron 1 of 12).2	CpG	9159	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
153962	chr22	30358551	30358880	+	0	NA	intron (NM_001017437, intron 1 of 11)	intron (NM_001017437, intron 1 of 11)	-1821	NM_005877	10291		NM_005877	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	splicing factor 3a subunit 1	protein-coding
39095	chr11	48017221	48017880	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	36991	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
195619	chr6	37703221	37703680	+	0	NA	Intergenic	L2c|LINE|L2	-5567	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
84107	chr16	29645871	29646030	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-17000	NM_001030288	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
145049	chr20	38424271	38424830	+	0	NA	TTS (NR_002910)	TTS (NR_002910)	780	NR_002910	26776		NR_002910		SNORA71B	RNU71B|U71b	small nucleolar RNA, H/ACA box 71B	snoRNA
188712	chr5	157311671	157311830	+	0	NA	exon (NM_001291721, exon 10 of 30)	exon (NM_001291721, exon 10 of 30)	33927	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
95155	chr17	35086571	35087330	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	2276	NR_037713	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
188128	chr5	150393351	150393650	+	0	NA	exon (NM_001135245, exon 22 of 26)	exon (NM_001135245, exon 22 of 26)	19256	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
232024	chr9	133373001	133373930	+	0	NA	intron (NM_001280791, intron 1 of 5)	AluSx|SINE|Alu	2595	NM_033161	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
196810	chr6	46062271	46062430	+	0	NA	intron (NM_001370649, intron 1 of 5)	intron (NM_001370649, intron 1 of 5)	17998	NM_001114086	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
60586	chr13	41931351	41931650	+	0	NA	intron (NM_015058, intron 2 of 44)	L1MA9|LINE|L1	29585	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
29607	chr10	71753921	71754450	+	0	NA	intron (NM_022153, intron 4 of 6)	intron (NM_022153, intron 4 of 6)	-16335	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
39716	chr11	61758851	61759150	+	0	NA	intron (NM_013279, intron 1 of 25)	intron (NM_013279, intron 1 of 25)	-1336	NR_026882	26070		NR_026882	ENSG00000124915	MYRF-AS1	DKFZP434K028	MYRF antisense RNA 1	ncRNA
187054	chr5	140041321	140041780	+	0	NA	intron (NM_013981, intron 1 of 9)	intron (NM_013981, intron 1 of 9)	1749	NM_004883	9542		NM_004883	ENSG00000158458	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
7712	chr1	36091601	36092330	+	0	NA	exon (NM_017825, exon 4 of 6)	exon (NM_017825, exon 4 of 6)	3073	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
128695	chr2	61534651	61535200	+	0	NA	intron (NM_003400, intron 1 of 24)	intron (NM_003400, intron 1 of 24)	3431	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
121498	chr19	47156701	47157500	+	0	NA	intron (NR_027280, intron 5 of 8)	intron (NR_027280, intron 5 of 8)	26265	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
225769	chr9	37409051	37410180	+	0	NA	Intergenic	Intergenic	-13081	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
119351	chr19	39981451	39981550	+	0	NA	3' UTR (NM_153001, exon 11 of 11)	3' UTR (NM_153001, exon 11 of 11)	10335	NM_006503	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
220437	chr8	100306321	100306980	+	0	NA	intron (NM_001280539, intron 2 of 10)	intron (NM_001280539, intron 2 of 10)	2725	NM_001353838	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
129304	chr2	68606171	68606530	+	0	NA	Intergenic	Intergenic	-37229	NM_138964	10887		NM_138964	ENSG00000169618	PROKR1	GPR73|GPR73a|PK-R1|PKR1|ZAQ	prokineticin receptor 1	protein-coding
211729	chr7	107044321	107045350	+	0	NA	5' UTR (NM_002736, exon 1 of 11)	5' UTR (NM_002736, exon 1 of 11)	130	NM_002736	5577		NM_002736	ENSG00000005249	PRKAR2B	PRKAR2|RII-BETA	protein kinase cAMP-dependent type II regulatory subunit beta	protein-coding
76646	chr15	75635101	75635500	+	0	NA	Intergenic	MIR|SINE|MIR	4924	NM_018285	55272		NM_018285	ENSG00000177971	IMP3	BRMS2|C15orf12|MRPS4	IMP U3 small nucleolar ribonucleoprotein 3	protein-coding
40876	chr11	65111361	65112100	+	0	NA	promoter-TSS (NM_001277233)	promoter-TSS (NM_001277233)	-124	NM_001277233	7108		NM_003273	ENSG00000149809	TM7SF2	ANG1|C14SR|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
177038	chr4	107718771	107718930	+	0	NA	intron (NM_005443, intron 1 of 11)	intron (NM_005443, intron 1 of 11)	1384	NM_005443	9061		NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
70577	chr14	102607701	102608350	+	0	NA	intron (NM_015156, intron 2 of 11)	AluSx|SINE|Alu	15376	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
129031	chr2	64986321	64986580	+	0	NA	Intergenic	Intergenic	-2029	NM_001193493	6509		NM_003038	ENSG00000115902	SLC1A4	ASCT1|SATT|SPATCCM	solute carrier family 1 member 4	protein-coding
183803	chr5	82351801	82352200	+	0	NA	Intergenic	Intergenic	72538	NM_001017971	92270		NM_001017971		ATP6AP1L	-	ATPase H+ transporting accessory protein 1 like (pseudogene)	pseudo
154477	chr22	35622921	35623500	+	0	NA	promoter-TSS (NM_001362846)	promoter-TSS (NM_001362846)	144	NM_001382813	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
134523	chr2	143543621	143544080	+	0	NA	intron (NM_018460, intron 10 of 13)	intron (NM_018460, intron 10 of 13)	-393217	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
107124	chr18	35091801	35092000	+	0	NA	intron (NR_046177, intron 2 of 6)	MSTA|LTR|ERVL-MaLR	50487	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
178791	chr4	153486001	153486930	+	0	NA	intron (NM_015196, intron 3 of 34)	MLT1L|LTR|ERVL-MaLR	20105	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
153101	chr22	23523871	23524030	+	0	NA	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-14152	NR_109832	101978785		NR_109832		PCAT14	-	prostate cancer associated transcript 14	ncRNA
206931	chr7	38230121	38230380	+	0	NA	3' UTR (NM_001363340, exon 10 of 10)	3' UTR (NM_001363340, exon 10 of 10)	43397	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
108058	chr18	59792501	59792700	+	0	NA	Intergenic	Intergenic	-95177	NM_133459	147372		NM_133459	ENSG00000183287	CCBE1	HKLLS1	collagen and calcium binding EGF domains 1	protein-coding
104918	chr17	81910671	81912400	+	0	NA	promoter-TSS (NM_001282204)	promoter-TSS (NM_001282204)	-136	NM_001256435	5833		NM_002861	ENSG00000185813	PCYT2	ET|SPG82	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
180332	chr5	6600651	6600750	+	0	NA	intron (NR_037947, intron 17 of 17)	intron (NR_037947, intron 17 of 17)	17424	NR_024424	255167		NR_024423	ENSG00000250056	LINC01018	SRHC	long intergenic non-protein coding RNA 1018	ncRNA
67157	chr14	68772701	68773100	+	0	NA	Intergenic	Intergenic	20167	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
166887	chr3	124553371	124553530	+	0	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-31208	NM_001322993	8997		NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|KALNC2|TRAD	kalirin RhoGEF kinase	protein-coding
10481	chr1	66353451	66353750	+	0	NA	promoter-TSS (NM_001297442)	promoter-TSS (NM_001297442)	-935	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
6163	chr1	27409251	27409350	+	0	NA	intron (NM_001201404, intron 7 of 7)	AluY|SINE|Alu	16678	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
220896	chr8	105658451	105658550	+	0	NA	intron (NM_001362837, intron 5 of 7)	AluYe5|SINE|Alu	338957	NM_001362837	23414		NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
114571	chr19	12902601	12902800	+	0	NA	intron (NM_001105578, intron 3 of 5)	AluJo|SINE|Alu	11540	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
204070	chr7	2039301	2039600	+	0	NA	intron (NM_001304524, intron 10 of 16)	L1MD1|LINE|L1	49602	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
8109	chr1	39195501	39196290	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	111728	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
72150	chr15	29088301	29088500	+	0	NA	intron (NM_001353793, intron 5 of 12).2	L2b|LINE|L2	17742	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
23031	chr1	226424321	226426580	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-17357	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
65478	chr14	51863251	51863350	+	0	NA	intron (NM_001243774, intron 1 of 2)	MIRb|SINE|MIR	2688	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
132227	chr2	102276821	102277080	+	0	NA	Intergenic	MamGypsy2-I|LTR|Gypsy	-34552	NM_001282408	9173		NM_003856	ENSG00000115602	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor like 1	protein-coding
130045	chr2	74426171	74426550	+	0	NA	TTS (NM_001320825)	TTS (NM_001320825)	4630	NM_032118	84058		NM_032118	ENSG00000005448	WDR54	-	WD repeat domain 54	protein-coding
17373	chr1	156573501	156573700	+	0	NA	Intergenic	AluSx|SINE|Alu	-1035	NM_178229	128239		NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
202229	chr6	156817151	156817800	+	0	NA	intron (NM_001371656, intron 2 of 20)	AluJo|SINE|Alu	-37744	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
178460	chr4	148171051	148171230	+	0	NA	intron (NM_000901, intron 4 of 8)	intron (NM_000901, intron 4 of 8)	271274	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
17425	chr1	156657081	156658200	+	0	NA	intron (NM_021948, intron 10 of 13)	CpG	15523	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
143100	chr20	23352751	23353250	+	0	NA	intron (NM_013248, intron 1 of 1)	intron (NM_013248, intron 1 of 1)	2209	NM_013248	29107		NM_013248	ENSG00000132661	NXT1	MTR2|P15	nuclear transport factor 2 like export factor 1	protein-coding
132343	chr2	105597521	105597980	+	0	NA	intron (NR_038891, intron 2 of 3)	intron (NR_038891, intron 2 of 3)	12809	NR_038891	285000		NR_038891		LINC02946	RMEL1	long intergenic non-protein coding RNA 2946	ncRNA
145376	chr20	41176451	41176750	+	0	NA	3' UTR (NM_002660, exon 32 of 32)	3' UTR (NM_002660, exon 32 of 32)	7577	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
91704	chr17	6453701	6454280	+	0	NA	3' UTR (NM_031220, exon 20 of 20)	3' UTR (NM_031220, exon 20 of 20)	9535	NM_001195228	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
218627	chr8	56199801	56200000	+	0	NA	intron (NM_002655, intron 1 of 4)	intron (NM_002655, intron 1 of 4)	11373	NM_001114635	5324		NM_002655	ENSG00000181690	PLAG1	PSA|SGPA|SRS4|ZNF912	PLAG1 zinc finger	protein-coding
68458	chr14	85931851	85932150	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-2678	NR_110155	101928767		NR_110155	ENSG00000258733	LINC02328	-	long intergenic non-protein coding RNA 2328	ncRNA
51790	chr12	53368301	53368700	+	0	NA	Intergenic	AluYm1|SINE|Alu	-11676	NM_001251825	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
111744	chr19	4362351	4362730	+	0	NA	intron (NM_001199943, intron 7 of 8)	intron (NM_001199943, intron 7 of 8)	18978	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
26465	chr10	17586821	17587180	+	0	NA	Intergenic	MER4E1|LTR|ERV1	30374	NM_014241	9200		NM_014241	ENSG00000165996	HACD1	CAP|CMYP11|MYONP|PTPLA	3-hydroxyacyl-CoA dehydratase 1	protein-coding
132192	chr2	101978451	101978750	+	0	NA	Intergenic	Intergenic	-4865	NR_103791	100506328		NR_103791		LINC01127	-	long intergenic non-protein coding RNA 1127	ncRNA
199111	chr6	111683401	111684430	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	75216	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
220868	chr8	103409801	103410000	+	0	NA	intron (NM_030780, intron 1 of 6)	MIRb|SINE|MIR	5207	NM_030780	81034		NM_030780	ENSG00000164933	SLC25A32	GLYB|MFT|MFTC|RREI	solute carrier family 25 member 32	protein-coding
107999	chr18	58691121	58691780	+	0	NA	intron (NM_173844, intron 2 of 15)	intron (NM_173844, intron 2 of 15)	-19577	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
237997	chrX	134764271	134764470	+	0	NA	promoter-TSS (NM_001316887)	promoter-TSS (NM_001316887)	-48	NM_001316887	10761		NM_021796	ENSG00000170965	PLAC1	CT92|OOSP2B|OOSP2L	placenta enriched 1	protein-coding
22096	chr1	211581721	211582730	+	0	NA	Intergenic	Intergenic	-3064	NM_021194	7779		NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
75062	chr15	64247901	64248850	+	0	NA	intron (NM_001329607, intron 4 of 11)	L3|LINE|CR1	-85353	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
166506	chr3	114323371	114324300	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-7266	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
77342	chr15	82534721	82535080	+	0	NA	Intergenic	L1PA5|LINE|L1	5557	NM_001021	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
141159	chr2	239258321	239258680	+	0	NA	intron (NM_006037, intron 2 of 26)	L1MEg|LINE|L1	-46962	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
58822	chr12	132832801	132833200	+	0	NA	3' UTR (NM_001161346, exon 18 of 18)	3' UTR (NM_001161346, exon 18 of 18)	-4131	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
51765	chr12	53303221	53303680	+	0	NA	intron (NM_021640, intron 3 of 6)	intron (NM_021640, intron 3 of 6)	3755	NM_021640	60314		NM_021640	ENSG00000139637	MYG1	C12orf10|Gamm1|MST024|MSTP024|MYG	MYG1 exonuclease	protein-coding
202047	chr6	153422451	153422570	+	0	NA	Intergenic	MER41E|LTR|ERV1	-291228	NM_012419	26575		NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G protein signaling 17	protein-coding
58993	chr13	20048651	20048980	+	0	NA	intron (NM_001353161, intron 14 of 26)	intron (NM_001353161, intron 14 of 26)	-53886	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
200225	chr6	131520551	131520850	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-52526	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
117775	chr19	29712701	29713630	+	0	NA	intron (NM_001256047, intron 1 of 2)	intron (NM_001256047, intron 1 of 2)	1891	NM_001282929	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
14606	chr1	145283751	145284700	+	0	NA	Intergenic	Intergenic	3109	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
132049	chr2	101110101	101110500	+	0	NA	intron (NM_001330348, intron 1 of 19)	intron (NM_001330348, intron 1 of 19)	41082	NM_001330348	11138		NM_007063	ENSG00000204634	TBC1D8	AD3|GRAMD8|HBLP1|TBC1D8A|VRP	TBC1 domain family member 8	protein-coding
4364	chr1	20714801	20715750	+	0	NA	intron (NM_020816, intron 2 of 14)	intron (NM_020816, intron 2 of 14)	2732	NM_020816	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
26490	chr10	17756851	17756950	+	0	NA	intron (NM_001098844, intron 1 of 3)	intron (NM_001098844, intron 1 of 3)	4699	NM_001098844	653567		NM_001013629	ENSG00000148483	TMEM236	FAM23A|FAM23B|bA162I21.2|bA16O1.2	transmembrane protein 236	protein-coding
1779	chr1	6041221	6042130	+	0	NA	intron (NM_172130, intron 2 of 14)	intron (NM_172130, intron 2 of 14)	-4213	NM_001199862	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
69162	chr14	92588571	92588730	+	0	NA	intron (NM_024832, intron 3 of 9)	MLT1A0|LTR|ERVL-MaLR	12416	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
93077	chr17	17589651	17590230	+	0	NA	intron (NM_001267551, intron 1 of 6)	intron (NM_001267551, intron 1 of 6)	1768	NM_001267552	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
222738	chr8	141400951	141401250	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	9079	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
89051	chr16	88438871	88439380	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-14155	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
119678	chr19	40880271	40881080	+	0	NA	intron (NM_030589, intron 1 of 7)	CpG-14548	2077	NM_000764	1549		NM_000764	ENSG00000198077	CYP2A7	CPA7|CPAD|CYP2A|CYPIIA7|P450-IIA4	cytochrome P450 family 2 subfamily A member 7	protein-coding
171945	chr4	886271	886530	+	0	NA	intron (NM_001318134, intron 8 of 24)	intron (NM_001318134, intron 8 of 24)	45916	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
63510	chr13	114263551	114264630	+	0	NA	intron (NM_001330104, intron 15 of 16)	intron (NM_001330104, intron 15 of 16)	-9738	NR_039724	100616227		NR_039724	ENSG00000265450	MIR4502	-	microRNA 4502	ncRNA
207092	chr7	39985521	39986350	+	0	NA	intron (NM_003718, intron 1 of 13)	LTR33|LTR|ERVL	35575	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
102244	chr17	75258251	75258550	+	0	NA	intron (NM_001291641, intron 1 of 17)	AluSz|SINE|Alu	3206	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
110546	chr19	2098571	2098900	+	0	NA	intron (NM_001363588, intron 7 of 7)	intron (NM_001363588, intron 7 of 7)	1820	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
225835	chr9	37966921	37967380	+	0	NA	intron (NM_003028, intron 3 of 5)	MIRb|SINE|MIR	-62797	NR_024872	92014		NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
152440	chr22	20592951	20593750	+	0	NA	Intergenic	AluSg7|SINE|Alu	85303	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
62685	chr13	102680921	102681600	+	0	NA	Intergenic	Intergenic	13261	NM_001010977	196541		NM_001010977	ENSG00000139780	METTL21C	C13orf39	methyltransferase 21C, AARS1 lysine	protein-coding
111643	chr19	4184171	4184730	+	0	NA	intron (NM_133475, intron 1 of 21)	intron (NM_133475, intron 1 of 21)	1096	NM_133475	170961		NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
229752	chr9	125176251	125176630	+	0	NA	intron (NM_001123369, intron 1 of 5)	AluJb|SINE|Alu	13363	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
92092	chr17	7564751	7565530	+	0	NA	intron (NM_015670, intron 4 of 10)	intron (NM_015670, intron 4 of 10)	3148	NR_037926	100533955		NR_037926		SENP3-EIF4A1	-	SENP3-EIF4A1 readthrough (NMD candidate)	ncRNA
137147	chr2	191061501	191062500	+	0	NA	intron (NM_003151, intron 9 of 23)	intron (NM_003151, intron 9 of 23)	40474	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
56849	chr12	120254351	120255430	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	-4727	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
175167	chr4	55857201	55857600	+	0	NA	intron (NM_001024924, intron 1 of 18)	AluYc3|SINE|Alu	3750	NM_178237	55763		NM_018261	ENSG00000090989	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
207149	chr7	43553901	43554550	+	0	NA	intron (NM_001287059, intron 26 of 27)	intron (NM_001287059, intron 26 of 27)	-28883	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
177974	chr4	139074871	139075300	+	0	NA	intron (NM_001371324, intron 5 of 10)	intron (NM_001371324, intron 5 of 10)	9139	NM_001276459	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
115426	chr19	15307471	15307830	+	0	NA	intron (NM_001379291, intron 1 of 19)	7SLRNA|srpRNA|srpRNA	24889	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
121466	chr19	47067721	47067980	+	0	NA	exon (NM_015168, exon 15 of 15)	exon (NM_015168, exon 15 of 15)	-19226	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
98175	chr17	46098871	46099030	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	93832	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
49242	chr12	19434551	19435280	+	0	NA	Intergenic	Intergenic	-4577	NM_153207	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
142441	chr20	3931821	3932080	+	0	NA	3' UTR (NM_001134338, exon 7 of 7)	3' UTR (NM_001134338, exon 7 of 7)	-14387	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
206759	chr7	36692451	36693430	+	0	NA	intron (NM_001177506, intron 1 of 21)	L2c|LINE|L2	31554	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
77708	chr15	85689671	85690170	+	0	NA	intron (NM_007200, intron 16 of 36)	intron (NM_007200, intron 16 of 36)	68805	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
136757	chr2	181314101	181314600	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	-8698	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
13028	chr1	111214371	111215210	+	0	NA	Intergenic	MER61E|LTR|ERV1	-10252	NM_001271833	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
84339	chr16	30192501	30195350	+	0	NA	promoter-TSS (NM_001015000)	promoter-TSS (NM_001015000)	50	NM_001014999	548593		NM_001014999	ENSG00000132207	SLX1A	GIYD1	SLX1 homolog A, structure-specific endonuclease subunit	protein-coding
232942	chr9	136939821	136940250	+	0	NA	TTS (NM_018998)	TTS (NM_018998)	4703	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
147512	chr20	59185001	59185750	+	0	NA	intron (NM_178457, intron 1 of 5)	intron (NM_178457, intron 1 of 5)	21554	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
4893	chr1	23797401	23798030	+	0	NA	exon (NM_001008216, exon 6 of 12)	exon (NM_001008216, exon 6 of 12)	1832	NM_001127621	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
145349	chr20	41143901	41144050	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-5975	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
27247	chr10	29647921	29648780	+	0	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	-13379	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
164238	chr3	57038801	57039000	+	0	NA	intron (NM_001377409, intron 1 of 13)	MIRb|SINE|MIR	-21764	NM_181727	353324		NM_181727	ENSG00000186451	SPATA12	SRG5	spermatogenesis associated 12	protein-coding
172268	chr4	1414871	1415030	+	0	NA	Intergenic	CpG	-8508	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
89826	chr16	89575401	89576450	+	0	NA	exon (NM_014427, exon 1 of 17)	exon (NM_014427, exon 1 of 17)	167	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
84137	chr16	29729471	29730030	+	0	NA	Intergenic	AluSx1|SINE|Alu	16240	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
104692	chr17	81524201	81524930	+	0	NA	Intergenic	Intergenic	-3812	NM_001077182	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
163758	chr3	52364921	52365180	+	0	NA	intron (NM_015512, intron 34 of 77)	intron (NM_015512, intron 34 of 77)	44958	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
55814	chr12	108826651	108826750	+	0	NA	intron (NM_001161330, intron 2 of 13)	intron (NM_001161330, intron 2 of 13)	851	NM_001161331	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
15440	chr1	150296001	150296600	+	0	NA	intron (NM_031901, intron 2 of 2)	intron (NM_031901, intron 2 of 2)	2439	NM_031901	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
142712	chr20	8587851	8588150	+	0	NA	intron (NM_015192, intron 3 of 31)	intron (NM_015192, intron 3 of 31)	-243185	NR_004386	26767		NR_004386	ENSG00000201348	RNU105B	105B|E1-2	RNA, U105B small nucleolar	snoRNA
112462	chr19	6386701	6387500	+	0	NA	intron (NM_002096, intron 5 of 12)	intron (NM_002096, intron 5 of 12)	2603	NR_106945	102465533		NR_106945	ENSG00000274390	MIR6885	hsa-mir-6885	microRNA 6885	ncRNA
53522	chr12	66904001	66904200	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-99831	NM_001379348	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
9214	chr1	45643901	45644500	+	0	NA	intron (NM_021639, intron 6 of 12)	intron (NM_021639, intron 6 of 12)	2485	NR_026768	728963		NR_026768		RPS15AP10	RPS15A_4_42	ribosomal protein S15a pseudogene 10	pseudo
152054	chr22	19679601	19679880	+	0	NA	Intergenic	Intergenic	-34763	NM_002688	5413		NM_002688	ENSG00000184702	SEPTIN5	CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5|Septin-5	septin 5	protein-coding
8132	chr1	39267321	39267580	+	0	NA	intron (NM_012090, intron 5 of 92)	AluSx3|SINE|Alu	-141623	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
162190	chr3	47001851	47002150	+	0	NA	exon (NM_015175, exon 31 of 54)	exon (NM_015175, exon 31 of 54)	-9542	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
215474	chr7	158333521	158333780	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	199163	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
79403	chr16	671871	672650	+	0	NA	exon (NM_001352281, exon 15 of 19)	exon (NM_001352281, exon 15 of 19)	-3411	NM_001278721	9028		NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	rhomboid like 1	protein-coding
16705	chr1	155229421	155229880	+	0	NA	Intergenic	AluSz|SINE|Alu	-2116	NR_002188	2630		NR_002188	ENSG00000291137	GBA1LP	Beta-GC|GBA|GBAP|GBAP1|GC|GLUC	glucosylceramidase beta 1 like, pseudogene	pseudo
30537	chr10	79448151	79448600	+	0	NA	Intergenic	MIR3|SINE|MIR	-2751	NM_153367	219654		NM_153367	ENSG00000165424	ZCCHC24	C10orf56|Z3CXXC8	zinc finger CCHC-type containing 24	protein-coding
80645	chr16	2995501	2996200	+	0	NA	Intergenic	Intergenic	-3105	NR_110948	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
68810	chr14	91252871	91254000	+	0	NA	intron (NM_001348437, intron 1 of 2)	CpG	445	NM_001348437	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
114820	chr19	13813251	13813550	+	0	NA	intron (NM_023072, intron 6 of 12)	intron (NM_023072, intron 6 of 12)	17957	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
209256	chr7	75889701	75889900	+	0	NA	TTS (NM_001040457)	TTS (NM_001040457)	10766	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
226181	chr9	64772871	64773030	+	0	NA	Intergenic	CpG	-27584	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
125205	chr2	10297451	10298300	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-5029	NM_002149	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
196204	chr6	42762501	42762900	+	0	NA	intron (NM_001318819, intron 1 of 13)	AluJb|SINE|Alu	15713	NM_001318819	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
55037	chr12	96391471	96391630	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSz6|SINE|Alu	8889	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
227538	chr9	91727301	91727550	+	0	NA	intron (NM_001318204, intron 7 of 7)	intron (NM_001318204, intron 7 of 7)	-91080	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
13156	chr1	111727771	111727930	+	0	NA	intron (NM_198926, intron 1 of 1)	intron (NM_198926, intron 1 of 1)	11545	NM_019099	55924		NM_019099	ENSG00000197852	INKA2	C1orf183|FAM212B	inka box actin regulator 2	protein-coding
2154	chr1	8410301	8410500	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	13432	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
112575	chr19	6639301	6639880	+	0	NA	Intergenic	MIR|SINE|MIR	30568	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
668	chr1	1369421	1370080	+	0	NA	Intergenic	AluJr|SINE|Alu	5457	NM_017900	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
46306	chr11	124930901	124931100	+	0	NA	intron (NM_152722, intron 1 of 6)	L1ME3A|LINE|L1	5047	NM_152722	220296		NM_152722	ENSG00000165478	HEPACAM	GlialCAM|HEPN1|MLC2A|MLC2B	hepatic and glial cell adhesion molecule	protein-coding
73383	chr15	42556851	42557250	+	0	NA	intron (NM_001130447, intron 1 of 4)	AluY|SINE|Alu	8212	NM_001130447	55142		NM_018097	ENSG00000137814	HAUS2	C15orf25|CEP27|HsT17025	HAUS augmin like complex subunit 2	protein-coding
64629	chr14	31030221	31030480	+	0	NA	intron (NM_001254728, intron 1 of 5)	intron (NM_001254728, intron 1 of 5)	3707	NM_001254728	11154		NM_007077	ENSG00000100478	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor related protein complex 4 subunit sigma 1	protein-coding
21713	chr1	206750801	206751200	+	0	NA	Intergenic	MIRb|SINE|MIR	19603	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
72411	chr15	31432401	31432600	+	0	NA	intron (NM_001302461, intron 1 of 1).3	AluJo|SINE|Alu	105665	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
192923	chr6	27688001	27689150	+	0	NA	Intergenic	Intergenic	-5460	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
46455	chr11	128193851	128194150	+	0	NA	Intergenic	Intergenic	-14766	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
135128	chr2	157428421	157429200	+	0	NA	intron (NM_004288, intron 5 of 7)	intron (NM_004288, intron 5 of 7)	15279	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
166381	chr3	113441201	113441650	+	0	NA	promoter-TSS (NM_001164496)	promoter-TSS (NM_001164496)	68	NM_001164496	55779		NM_018338	ENSG00000206530	CFAP44	SPGF20|WDR52	cilia and flagella associated protein 44	protein-coding
168899	chr3	152323701	152324700	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	16790	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
126715	chr2	30174921	30175530	+	0	NA	Intergenic	MIRb|SINE|MIR	-12209	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
195714	chr6	38973201	38973450	+	0	NA	intron (NM_001371, intron 82 of 91)	intron (NM_001371, intron 82 of 91)	-20218	NR_038401	100131047		NR_038401		DNAH8-AS1	-	DNAH8 antisense RNA 1	ncRNA
81142	chr16	4402351	4403380	+	0	NA	intron (NM_001351729, intron 6 of 27)	intron (NM_001351729, intron 6 of 27)	13032	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
269	chr1	928271	928550	+	0	NA	intron (NM_001385641, intron 2 of 13)	AluY|SINE|Alu	2679	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
107670	chr18	49161671	49162480	+	0	NA	intron (NM_001374431, intron 15 of 16)	intron (NM_001374431, intron 15 of 16)	-112307	NR_039898	100616420		NR_039898	ENSG00000263849	MIR4744	-	microRNA 4744	ncRNA
92322	chr17	8138121	8141450	+	0	NA	TTS (NM_002616)	TTS (NM_002616)	5286	NR_106943	102465532		NR_106943	ENSG00000284117	MIR6883	hsa-mir-6883	microRNA 6883	ncRNA
175239	chr4	56981571	56983230	+	0	NA	intron (NM_001303268, intron 1 of 23)	AluJr|SINE|Alu	3504	NM_000938	5431		NM_000938	ENSG00000047315	POLR2B	POL2RB|RPB2|hRPB140	RNA polymerase II subunit B	protein-coding
207176	chr7	43610871	43611030	+	0	NA	intron (NR_135582, intron 6 of 6)	AluSx1|SINE|Alu	27842	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
32221	chr10	101813921	101814230	+	0	NA	intron (NM_001142434, intron 1 of 14)	AluSz|SINE|Alu	4369	NM_012215	10724		NM_012215	ENSG00000198408	OGA	MEA5|MGEA5|NCOAT	O-GlcNAcase	protein-coding
82546	chr16	18410051	18410230	+	0	NA	Intergenic	L2a|LINE|L2	1837	NR_036140	100422960		NR_036140	ENSG00000284305	MIR3179-1	-	microRNA 3179-1	ncRNA
159972	chr3	17749421	17750130	+	0	NA	Intergenic	Intergenic	6831	NR_135536	105376975		NR_135536	ENSG00000286352	LOC105376975	-	uncharacterized LOC105376975	ncRNA
57216	chr12	121509351	121509450	+	0	NA	intron (NM_001005366, intron 11 of 22)	intron (NM_001005366, intron 11 of 22)	-65048	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
67359	chr14	69712771	69713380	+	0	NA	3' UTR (NM_014734, exon 6 of 6)	3' UTR (NM_014734, exon 6 of 6)	-54067	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
239470	chrY	56729851	56730230	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-224215	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
12662	chr1	109277321	109278100	+	0	NA	Intergenic	Intergenic	5434	NM_001350237	84722		NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
56413	chr12	113296821	113297480	+	0	NA	3' UTR (NM_001351346, exon 29 of 29)	3' UTR (NM_001351346, exon 29 of 29)	5627	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
28910	chr10	63160601	63161000	+	0	NA	Intergenic	Intergenic	27472	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
110579	chr19	2154951	2155250	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3534	NM_001261826	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
158248	chr22	50303821	50304530	+	0	NA	promoter-TSS (NM_001376882)	promoter-TSS (NM_001376882)	-354	NM_001376873	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
31954	chr10	100680821	100681230	+	0	NA	Intergenic	CpG	-54371	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
13398	chr1	113951801	113952430	+	0	NA	intron (NM_198269, intron 1 of 14)	AluSx1|SINE|Alu	970	NM_198269	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
86230	chr16	58121851	58122680	+	0	NA	intron (NR_136632, intron 1 of 5)	intron (NR_136632, intron 1 of 5)	7116	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
97789	chr17	44757851	44758100	+	0	NA	Intergenic	Intergenic	-1013	NM_001318933	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
7948	chr1	37553771	37554700	+	0	NA	promoter-TSS (NM_024700)	promoter-TSS (NM_024700)	58	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
133888	chr2	130150221	130150730	+	0	NA	TTS (NM_017751)	TTS (NM_017751)	-5363	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
74745	chr15	63208771	63209130	+	0	NA	intron (NM_016530, intron 1 of 7)	AluSx1|SINE|Alu	19344	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
172296	chr4	1571851	1572150	+	0	NA	Intergenic	Intergenic	111991	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
229880	chr9	126498951	126500000	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-88971	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
76428	chr15	74791821	74793030	+	0	NA	intron (NM_001354988, intron 2 of 14)	MIR3|SINE|MIR	-3668	NR_039738	100616183		NR_039738	ENSG00000264386	MIR4513	-	microRNA 4513	ncRNA
195613	chr6	37695801	37696500	+	0	NA	intron (NM_153487, intron 1 of 16)	CpG	1733	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
132076	chr2	101274151	101274450	+	0	NA	Intergenic	Intergenic	-1251	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
123478	chr19	54171921	54172380	+	0	NA	intron (NM_001145303, intron 1 of 14).6	MSR1|Satellite|Satellite	1010	NM_001145303	147798		NM_144686	ENSG00000167608	TMC4	-	transmembrane channel like 4	protein-coding
19185	chr1	172135021	172135300	+	0	NA	intron (NM_001350204, intron 15 of 20)	L2a|LINE|L2	-3648	NR_036066	100422882		NR_036066	ENSG00000283152	MIR3120	mir-3120	microRNA 3120	ncRNA
191958	chr6	16138871	16139700	+	0	NA	intron (NM_013262, intron 2 of 6)	AluSc8|SINE|Alu	-2271	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
215102	chr7	155210301	155211280	+	0	NA	Intergenic	Intergenic	-86982	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
22326	chr1	214261471	214261900	+	0	NA	Intergenic	Intergenic	-19474	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
144445	chr20	35504251	35504350	+	0	NA	exon (NM_001318219, exon 28 of 33)	exon (NM_001318219, exon 28 of 33)	25352	NR_026933	140873		NM_080828	ENSG00000125975	C20orf173	dJ477O4.4	chromosome 20 open reading frame 173	protein-coding
36218	chr11	3554271	3554900	+	0	NA	intron (NR_126335, intron 1 of 2)	intron (NR_126335, intron 1 of 2)	17402	NR_126335	101927708		NR_126335	ENSG00000255367	LOC101927708	-	uncharacterized LOC101927708	ncRNA
145043	chr20	38303971	38304230	+	0	NA	promoter-TSS (NM_001725)	promoter-TSS (NM_001725)	-56	NM_001725	671		NM_001725	ENSG00000101425	BPI	BPIFD1|rBPI	bactericidal permeability increasing protein	protein-coding
176611	chr4	99086471	99087030	+	0	NA	intron (NM_000671, intron 1 of 8)	AluYf1|SINE|Alu	2038	NM_000671	128		NM_000671	ENSG00000197894	ADH5	ADH-3|ADHX|AMEDS|BMFS7|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding
203925	chr7	1528021	1528280	+	0	NA	Intergenic	AluJr|SINE|Alu	-2552	NM_002360	7975		NM_002360	ENSG00000198517	MAFK	NFE2U|P18	MAF bZIP transcription factor K	protein-coding
61294	chr13	50222351	50222900	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	50607	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
96581	chr17	40491671	40491830	+	0	NA	intron (NM_032865, intron 2 of 12)	intron (NM_032865, intron 2 of 12)	9873	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
222390	chr8	133901271	133901630	+	0	NA	intron (NR_125424, intron 3 of 3)	intron (NR_125424, intron 3 of 3)	14954	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
46937	chr11	134386221	134386500	+	0	NA	intron (NM_054025, intron 2 of 5)	intron (NM_054025, intron 2 of 5)	25558	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
191608	chr6	12112621	12112880	+	0	NA	intron (NM_002114, intron 3 of 8)	L1MEg|LINE|L1	100438	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
198405	chr6	105978601	105979000	+	0	NA	Intergenic	Intergenic	-107536	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
47602	chr12	5022471	5022650	+	0	NA	Intergenic	Intergenic	-21319	NM_002234	3741		NM_002234	ENSG00000130037	KCNA5	ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1	potassium voltage-gated channel subfamily A member 5	protein-coding
187440	chr5	142103071	142103430	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-5529	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
119857	chr19	41429471	41430230	+	0	NA	Intergenic	AluY|SINE|Alu	-1120	NM_198540	374907		NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
194088	chr6	31895671	31895830	+	0	NA	intron (NM_001318833, intron 3 of 27).6	LTR23|LTR|ERV1	1239	NM_001318833	10919		NM_006709	ENSG00000204371	EHMT2	BAT8|C6orf30|G9A|GAT8|KMT1C|NG36	euchromatic histone lysine methyltransferase 2	protein-coding
7330	chr1	32701251	32701880	+	0	NA	intron (NM_030786, intron 1 of 4)	MIR3|SINE|MIR	1205	NM_030786	81493		NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
82742	chr16	21400801	21401000	+	0	NA	Intergenic	AluJr|SINE|Alu	24478	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
216369	chr8	17684101	17684300	+	0	NA	intron (NM_001363062, intron 6 of 13)	intron (NM_001363062, intron 6 of 13)	-2543	NR_036103	100422850		NR_036103	ENSG00000265520	MIR548V	-	microRNA 548v	ncRNA
179056	chr4	165375401	165375600	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	-3508	NM_001873	1363		NM_001873	ENSG00000109472	CPE	BDVS|CPH|IDDHH	carboxypeptidase E	protein-coding
30948	chr10	87658871	87659030	+	0	NA	promoter-TSS (NM_004670)	promoter-TSS (NM_004670)	-928	NM_004670	9060		NM_004670	ENSG00000198682	PAPSS2	ATPSK2|BCYM4|SK2	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding
205333	chr7	12624001	12624230	+	0	NA	intron (NM_033128, intron 3 of 13)	intron (NM_033128, intron 3 of 13)	34592	NM_033128	85477		NM_033128	ENSG00000006747	SCIN	-	scinderin	protein-coding
22113	chr1	211680721	211682100	+	0	NA	intron (NR_148994, intron 2 of 3)	L3|LINE|CR1	5648	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
55489	chr12	104736651	104736950	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	145167	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
51481	chr12	52080351	52080450	+	0	NA	intron (NM_001369216, intron 1 of 2)	intron (NM_001369216, intron 1 of 2)	696	NM_001369216	113523638		NM_001369216	ENSG00000284791	SMIM41	-	small integral membrane protein 41	protein-coding
180717	chr5	26476451	26476630	+	0	NA	Intergenic	L1PA3|LINE|L1	562046	NM_016279	1007		NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding
143157	chr20	24032201	24032600	+	0	NA	Intergenic	MER101|LTR|ERV1	-43621	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
175148	chr4	55447271	55447580	+	0	NA	intron (NM_001267843, intron 19 of 23)	intron (NM_001267843, intron 19 of 23)	51468	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
137168	chr2	191112421	191113280	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	38144	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
54533	chr12	92128921	92130250	+	0	NA	intron (NR_132341, intron 1 of 4)	LTR85a|LTR|Gypsy?	12128	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
196429	chr6	43451571	43451730	+	0	NA	intron (NM_206539, intron 5 of 5)	intron (NM_206539, intron 5 of 5)	3898	NM_023932	65989		NM_023932	ENSG00000171462	DLK2	DLK-2|EGFL9	delta like non-canonical Notch ligand 2	protein-coding
71270	chr14	105231471	105231980	+	0	NA	intron (NM_001242789, intron 1 of 12)	intron (NM_001242789, intron 1 of 12)	16160	NM_145685	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
167070	chr3	126990701	126990900	+	0	NA	intron (NM_032242, intron 1 of 30)	MIRb|SINE|MIR	2206	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
218920	chr8	60807471	60808210	+	0	NA	intron (NM_017780, intron 6 of 37)	intron (NM_017780, intron 6 of 37)	66581	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
158139	chr22	50178851	50179380	+	0	NA	non-coding (NR_027691, exon 4 of 5)	non-coding (NR_027691, exon 4 of 5)	-6798	NR_135275	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
96996	chr17	42282721	42283080	+	0	NA	Intergenic	L2c|LINE|L2	-4647	NM_003152	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
26781	chr10	23068201	23068400	+	0	NA	Intergenic	Intergenic	-27279	NM_012228	22921		NM_012228	ENSG00000148450	MSRB2	CBS-1|CBS1|CGI-131|MSRB|PILB	methionine sulfoxide reductase B2	protein-coding
219230	chr8	66916351	66917100	+	0	NA	intron (NM_173518, intron 14 of 14)	L2c|LINE|L2	5824	NR_002598	641648		NR_002598	ENSG00000254341	SNORD87	HBII-276|U87	small nucleolar RNA, C/D box 87	snoRNA
63845	chr14	21515401	21515800	+	0	NA	Intergenic	AluSx3|SINE|Alu	-4260	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
234672	chrX	20218801	20219200	+	0	NA	intron (NM_004586, intron 2 of 21)	intron (NM_004586, intron 2 of 21)	47909	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
180560	chr5	14675421	14676700	+	0	NA	intron (NM_138348, intron 2 of 6)	MER58A|DNA|hAT-Charlie	11342	NM_138348	90268		NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM|IMD107	OTU deubiquitinase with linear linkage specificity	protein-coding
30771	chr10	84336421	84336680	+	0	NA	intron (NM_001284241, intron 1 of 2)	L2a|LINE|L2	7961	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
35933	chr11	2461571	2461730	+	0	NA	5' UTR (NM_181798, exon 1 of 16)	5' UTR (NM_181798, exon 1 of 16)	196	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
34048	chr10	124738501	124738700	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	5778	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
49118	chr12	14787121	14787380	+	0	NA	exon (NM_016312, exon 12 of 12)	exon (NM_016312, exon 12 of 12)	12845	NM_177925	55766		NM_018267	ENSG00000246705	H2AJ	H2AFJ	H2A.J histone	protein-coding
224349	chr9	6893771	6894530	+	0	NA	intron (NR_148677, intron 8 of 21)	intron (NR_148677, intron 8 of 21)	136177	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
91513	chr17	4951501	4952350	+	0	NA	intron (NM_053013, intron 2 of 11)	intron (NM_053013, intron 2 of 11)	806	NM_001976	2027		NM_001976	ENSG00000108515	ENO3	GSD13|MSE	enolase 3	protein-coding
82308	chr16	15654401	15654600	+	0	NA	intron (NM_017668, intron 1 of 8)	AluSx|SINE|Alu	4255	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
212894	chr7	130885751	130886050	+	0	NA	intron (NR_110472, intron 2 of 3)	AluSz6|SINE|Alu	-8361	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
202068	chr6	154234471	154234630	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	95531	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
4288	chr1	19873901	19874130	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-8380	NM_015207	23252		NM_015207	ENSG00000169914	OTUD3	DUBA4	OTU deubiquitinase 3	protein-coding
49811	chr12	31976701	31977300	+	0	NA	intron (NM_018169, intron 3 of 5)	L1ME3B|LINE|L1	17585	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
222529	chr8	140576351	140576650	+	0	NA	intron (NM_012154, intron 2 of 18)	L1ME1|LINE|L1	59133	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
69908	chr14	99507151	99507450	+	0	NA	3' UTR (NM_001144995, exon 6 of 6)	3' UTR (NM_001144995, exon 6 of 6)	25891	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
180689	chr5	21484451	21484980	+	0	NA	intron (NR_027026, intron 3 of 4)	intron (NR_027026, intron 3 of 4)	25235	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
70120	chr14	100249351	100249450	+	0	NA	intron (NM_003403, intron 1 of 4)	AluSz|SINE|Alu	10256	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
8562	chr1	41356401	41356600	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-4934	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
43604	chr11	83170871	83171030	+	0	NA	intron (NM_015885, intron 8 of 15)	intron (NM_015885, intron 8 of 15)	13819	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
27589	chr10	32381871	32382030	+	0	NA	Intergenic	L2b|LINE|L2	-3181	NR_168506	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
220847	chr8	103111421	103111700	+	0	NA	Intergenic	Intergenic	-9472	NR_145429	379034		NR_145429		LINC01181	-	long intergenic non-protein coding RNA 1181	ncRNA
135210	chr2	159129451	159129750	+	0	NA	intron (NM_001350063, intron 4 of 24)	intron (NM_001350063, intron 4 of 24)	-57235	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
26992	chr10	26790851	26791350	+	0	NA	intron (NR_145410, intron 2 of 11)	intron (NR_145410, intron 2 of 11)	69858	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
6257	chr1	27566951	27567450	+	0	NA	intron (NM_001029882, intron 1 of 6)	(CTG)n|Simple_repeat|Simple_repeat	36294	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
4459	chr1	21341421	21341830	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	3879	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
89447	chr16	88992421	88992680	+	0	NA	Intergenic	Intergenic	-15343	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
26823	chr10	24483851	24483950	+	0	NA	intron (NM_001282770, intron 2 of 11)	intron (NM_001282770, intron 2 of 11)	17369	NM_001282770	56243		NM_019590	ENSG00000120549	KIAA1217	ETL4|SKT	KIAA1217	protein-coding
219384	chr8	70403401	70404930	+	0	NA	promoter-TSS (NM_001321703)	promoter-TSS (NM_001321703)	52	NM_001321703	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
219017	chr8	63226351	63226730	+	0	NA	Intergenic	Intergenic	57537	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
182418	chr5	61363001	61363200	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	30842	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
29808	chr10	72302101	72302780	+	0	NA	Intergenic	AluSg|SINE|Alu	28516	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
17863	chr1	159935121	159935550	+	0	NA	intron (NM_001135050, intron 6 of 20)	intron (NM_001135050, intron 6 of 20)	-9828	NM_003564	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
152830	chr22	21952071	21953330	+	0	NA	intron (NM_014634, intron 1 of 7)	CpG	148	NM_014634	9647		NM_014634	ENSG00000100034	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent 1F	protein-coding
164149	chr3	56762751	56763500	+	0	NA	intron (NM_001289698, intron 3 of 10)	MIRb|SINE|MIR	12592	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
225445	chr9	35104501	35105450	+	0	NA	non-coding (NR_134455, exon 10 of 10)	non-coding (NR_134455, exon 10 of 10)	-1780	NM_001287031	30968		NM_013442	ENSG00000165283	STOML2	HSPC108|SLP-2	stomatin like 2	protein-coding
188804	chr5	158174601	158174750	+	0	NA	Intergenic	AluY|SINE|Alu	235098	NR_109888	101927697		NR_109888	ENSG00000276778	LINC02227	-	long intergenic non-protein coding RNA 2227	ncRNA
224043	chr9	3504551	3504650	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	-15166	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
28635	chr10	59626001	59626280	+	0	NA	Intergenic	Intergenic	83751	NM_001323979	220963		NM_194298	ENSG00000165449	SLC16A9	C10orf36|MCT9	solute carrier family 16 member 9	protein-coding
197374	chr6	73477821	73478080	+	0	NA	intron (NM_133645, intron 4 of 12)	intron (NM_133645, intron 4 of 12)	16213	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
3609	chr1	16350751	16351050	+	0	NA	intron (NM_018994, intron 1 of 9)	intron (NM_018994, intron 1 of 9)	1580	NM_018994	54455		NM_018994	ENSG00000037637	FBXO42	Fbx42|JFK	F-box protein 42	protein-coding
66892	chr14	65204951	65206000	+	0	NA	Intergenic	Intergenic	16872	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
213727	chr7	140360571	140361480	+	0	NA	intron (NM_032295, intron 5 of 11)	L2c|LINE|L2	37505	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
94853	chr17	31503151	31503450	+	0	NA	intron (NM_001346748, intron 1 of 12)	AluSz|SINE|Alu	15192	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
66923	chr14	65414921	65415330	+	0	NA	intron (NM_001371533, intron 1 of 10)	intron (NM_001371533, intron 1 of 10)	2395	NM_001371533	2530		NM_004480	ENSG00000033170	FUT8	CDGF|CDGF1	fucosyltransferase 8	protein-coding
140761	chr2	234514721	234515250	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-17904	NM_001282431	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
136700	chr2	181138921	181139450	+	0	NA	intron (NR_130784, intron 1 of 4)	L2b|LINE|L2	15348	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
202096	chr6	154675501	154676100	+	0	NA	Intergenic	Intergenic	-57578	NM_001286189	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
139503	chr2	224538701	224539100	+	0	NA	intron (NM_001257197, intron 1 of 14)	FLAM_C|SINE|Alu	31055	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
110411	chr19	1956321	1956730	+	0	NA	intron (NM_001319, intron 1 of 11)	AluSx3|SINE|Alu	-1976	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
150491	chr21	42734621	42734900	+	0	NA	intron (NM_001001576, intron 3 of 14)	MIR1_Amn|SINE|MIR	45234	NR_135517	101928311		NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
105932	chr18	3585501	3586680	+	0	NA	intron (NM_001242765, intron 4 of 8)	intron (NM_001242765, intron 4 of 8)	-8024	NR_024101	649446		NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
142516	chr20	4824671	4825030	+	0	NA	Intergenic	Intergenic	-1242	NM_014737	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
173691	chr4	15547371	15547730	+	0	NA	intron (NM_001080522, intron 18 of 37)	MER20|DNA|hAT-Charlie	68338	NM_001378617	57545		NM_020785	ENSG00000048342	CC2D2A	COACH2|JBTS9|MKS6|RP93	coiled-coil and C2 domain containing 2A	protein-coding
140490	chr2	233192001	233192400	+	0	NA	intron (NM_001017915, intron 22 of 26).2	intron (NM_001017915, intron 22 of 26).2	-59371	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
237946	chrX	132615301	132615580	+	0	NA	Intergenic	Intergenic	-52202	NR_046691	100874102		NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
220525	chr8	100684501	100684700	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	18424	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
47979	chr12	6892651	6893100	+	0	NA	Intergenic	AluJr|SINE|Alu	-3517	NR_135083	105369632		NR_135083	ENSG00000111671	LOC105369632	-	uncharacterized LOC105369632	ncRNA
150760	chr21	43786021	43787030	+	0	NA	Intergenic	Intergenic	-3052	NM_003683	8568		NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
191870	chr6	15298571	15298730	+	0	NA	intron (NM_001267040, intron 1 of 17)	AluSx|SINE|Alu	49795	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
24164	chr1	235870121	235870450	+	0	NA	intron (NM_001301365, intron 1 of 52)	MER57B1|LTR|ERV1	-3379	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
29101	chr10	68329901	68330100	+	0	NA	intron (NM_001033083, intron 1 of 8)	MIRb|SINE|MIR	-1693	NM_001322438	3189		NM_012207	ENSG00000096746	HNRNPH3	2H9|HNRPH3	heterogeneous nuclear ribonucleoprotein H3	protein-coding
235234	chrX	41382201	41382400	+	0	NA	Intergenic	AluY|SINE|Alu	48134	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
164092	chr3	56583951	56584050	+	0	NA	intron (NR_148371, intron 9 of 19)	SVA_C|Retroposon|SVA	26825	NM_001141947	285331		NM_001012506	ENSG00000180376	CCDC66	-	coiled-coil domain containing 66	protein-coding
182685	chr5	67537401	67538450	+	0	NA	Intergenic	Intergenic	108864	NR_147169	105379006		NR_147169	ENSG00000249736	LINC02242	-	long intergenic non-protein coding RNA 2242	ncRNA
191345	chr6	7132571	7132930	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	24789	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
57524	chr12	122135121	122135830	+	0	NA	intron (NM_014938, intron 10 of 16)	intron (NM_014938, intron 10 of 16)	-32244	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
53726	chr12	68626971	68627880	+	0	NA	promoter-TSS (NR_033335)	promoter-TSS (NR_033335)	-50	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
46548	chr11	128479221	128479580	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	42910	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
142831	chr20	17511501	17511900	+	0	NA	intron (NM_001195, intron 4 of 7)	L1M5|LINE|L1	19679	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
9174	chr1	45593101	45593300	+	0	NA	intron (NM_001195193, intron 2 of 12)	MER75|DNA|PiggyBac	9159	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
122544	chr19	49646751	49647050	+	0	NA	intron (NM_021228, intron 6 of 10)	intron (NM_021228, intron 6 of 10)	4691	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
107808	chr18	51193671	51194080	+	0	NA	intron (NM_016626, intron 1 of 1)	MER126|DNA|DNA	3806	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
41835	chr11	67100021	67100480	+	0	NA	Intergenic	Intergenic	18098	NR_160735	107984341		NR_160735		LOC107984341	-	uncharacterized LOC107984341	ncRNA
10790	chr1	77655401	77655800	+	0	NA	intron (NR_164775, intron 1 of 14)	MLT1A0|LTR|ERVL-MaLR	27058	NM_001376155	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
64321	chr14	23610121	23611000	+	0	NA	Intergenic	AluJr4|SINE|Alu	-19555	NM_001318835	10202		NM_005794	ENSG00000100867	DHRS2	HEP27|SDR25C1	dehydrogenase/reductase 2	protein-coding
168877	chr3	152303551	152303650	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	4586	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
25424	chr10	6569251	6569850	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	10726	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
38327	chr11	44303971	44304130	+	0	NA	intron (NM_021926, intron 1 of 3)	intron (NM_021926, intron 1 of 3)	6089	NM_021926	60529		NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
16133	chr1	153661001	153662030	+	0	NA	TTS (NM_001267809)	TTS (NM_001267809)	2812	NM_012437	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
205039	chr7	6532901	6533300	+	0	NA	intron (NM_001145118, intron 2 of 21)	MER20|DNA|hAT-Charlie	18336	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
123795	chr19	55153671	55153830	+	0	NA	intron (NM_000363, intron 7 of 7)	AluSx3|SINE|Alu	3982	NM_000363	7137		NM_000363	ENSG00000129991	TNNI3	CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI	troponin I3, cardiac type	protein-coding
135037	chr2	156324401	156324800	+	0	NA	3' UTR (NM_006186, exon 8 of 8)	3' UTR (NM_006186, exon 8 of 8)	8121	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
137196	chr2	191150101	191151550	+	0	NA	intron (NM_001243835, intron 1 of 23)	intron (NM_001243835, intron 1 of 23)	169	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
216063	chr8	10351421	10351680	+	0	NA	intron (NM_001199729, intron 6 of 6).2	AluSc|SINE|Alu	-123015	NR_120604	101929191		NR_120604	ENSG00000253641	LINC03022	LINCR-0001	long intergenic non-protein coding RNA 3022	ncRNA
1973	chr1	6596501	6596700	+	0	NA	intron (NM_014851, intron 2 of 3)	intron (NM_014851, intron 2 of 3)	6269	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
40366	chr11	63985601	63987380	+	0	NA	exon (NM_017670, exon 1 of 7)	exon (NM_017670, exon 1 of 7)	637	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
42803	chr11	72806701	72807030	+	0	NA	Intergenic	AluSz|SINE|Alu	-7546	NM_033388	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
23945	chr1	235122501	235122700	+	0	NA	intron (NM_014765, intron 1 of 4)	intron (NM_014765, intron 1 of 4)	5337	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
237690	chrX	124364471	124365080	+	0	NA	intron (NM_002351, intron 1 of 3)	Tigger3b|DNA|TcMar-Tigger	18212	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
109761	chr19	1121271	1121630	+	0	NA	intron (NM_001100122, intron 8 of 28).2	intron (NM_001100122, intron 8 of 28).2	10771	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
159294	chr3	12984001	12984880	+	0	NA	intron (NM_001134382, intron 1 of 13)	MER91A|DNA|hAT-Tip100	2661	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
67651	chr14	73074021	73074950	+	0	NA	intron (NM_021239, intron 2 of 18)	AluJo|SINE|Alu	15951	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
88686	chr16	85758971	85759330	+	0	NA	Intergenic	AluJr|SINE|Alu	-8054	NR_161453	404550		NM_206967	ENSG00000154102	C16orf74	-	chromosome 16 open reading frame 74	protein-coding
119214	chr19	39453651	39453950	+	0	NA	intron (NM_001111020, intron 3 of 29)	AluY|SINE|Alu	8152	NM_003169	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
109490	chr19	820051	821670	+	0	NA	intron (NM_001270366, intron 2 of 7)	AluSx|SINE|Alu	1092	NM_024888	79948		NM_024888	ENSG00000129951	PLPPR3	LPPR3|LPR3|PRG-2|PRG2	phospholipid phosphatase related 3	protein-coding
10765	chr1	77218751	77219780	+	0	NA	intron (NM_005482, intron 1 of 10)	intron (NM_005482, intron 1 of 10)	165	NM_005482	10026		NM_005482	ENSG00000142892	PIGK	GPI8|NEDHCAS	phosphatidylinositol glycan anchor biosynthesis class K	protein-coding
235380	chrX	44961571	44962330	+	0	NA	intron (NM_001291416, intron 3 of 28)	intron (NM_001291416, intron 3 of 28)	88762	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
189976	chr5	177446031	177448280	+	0	NA	promoter-TSS (NM_001375594)	promoter-TSS (NM_001375594)	-270	NM_001375594	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
124324	chr19	58153901	58154100	+	0	NA	Intergenic	Intergenic	-3211	NM_024620	79673		NM_024620	ENSG00000181894	ZNF329	-	zinc finger protein 329	protein-coding
211538	chr7	105388501	105389800	+	0	NA	promoter-TSS (NM_001350743)	promoter-TSS (NM_001350743)	-220	NM_001350743	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
150517	chr21	42922471	42922650	+	0	NA	intron (NM_001308491, intron 1 of 1)	AluYm1|SINE|Alu	3038	NM_001308491	90625		NM_001308491	ENSG00000233056	ERVH48-1	C21orf105|NDUFV3-AS1|SUPYN	endogenous retrovirus group 48 member 1, envelope	protein-coding
110597	chr19	2174401	2175250	+	0	NA	intron (NM_032482, intron 1 of 27)	AluJr|SINE|Alu	10892	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
20198	chr1	193107971	193108130	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-1936	NM_016066	51022		NM_016066	ENSG00000023572	GLRX2	CGI-133|GRX2	glutaredoxin 2	protein-coding
135804	chr2	169877551	169877650	+	0	NA	exon (NM_172070, exon 4 of 39)	exon (NM_172070, exon 4 of 39)	50146	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
201888	chr6	150895871	150896230	+	0	NA	intron (NM_015440, intron 7 of 27)	MIRb|SINE|MIR	29564	NM_001350491	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
174270	chr4	38155371	38155880	+	0	NA	Intergenic	Intergenic	35671	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
116101	chr19	17290851	17291280	+	0	NA	Intergenic	Intergenic	9164	NM_001278444	126549		NM_152363	ENSG00000160117	ANKLE1	ANKRD41|LEM3|LEMD6	ankyrin repeat and LEM domain containing 1	protein-coding
126154	chr2	26242451	26243280	+	0	NA	intron (NM_000182, intron 1 of 19)	AluY|SINE|Alu	1767	NM_000182	3030		NM_000182	ENSG00000084754	HADHA	ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha	protein-coding
195155	chr6	35730121	35730650	+	0	NA	intron (NR_027117, intron 6 of 9)	intron (NR_027117, intron 6 of 9)	-1802	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
5328	chr1	25244671	25245280	+	0	NA	non-coding (NR_135786, exon 3 of 5)	non-coding (NR_135786, exon 3 of 5)	2479	NR_135786	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
6533	chr1	28575871	28576450	+	0	NA	intron (NM_017846, intron 8 of 8)	AluJb|SINE|Alu	2662	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	small nucleolar RNA, C/D box 99	snoRNA
134090	chr2	131533051	131533150	+	0	NA	intron (NM_001349046, intron 6 of 6)	intron (NM_001349046, intron 6 of 6)	5212	NM_138770	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
52190	chr12	54351951	54352850	+	0	NA	TTS (NR_073424)	TTS (NR_073424)	-1291	NR_120487	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
168371	chr3	141902921	141903380	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	26507	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
127744	chr2	43595401	43596680	+	0	NA	promoter-TSS (NR_073394)	promoter-TSS (NR_073394)	-2	NM_001271644	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
189588	chr5	175640951	175641050	+	0	NA	Intergenic	Intergenic	-17071	NR_160284	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
218452	chr8	48007971	48009350	+	0	NA	intron (NM_003350, intron 1 of 3)	CpG	229	NM_003350	7336		NM_003350	ENSG00000169139	UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin conjugating enzyme E2 V2	protein-coding
166702	chr3	120595571	120596780	+	0	NA	promoter-TSS (NM_001168331)	promoter-TSS (NM_001168331)	-161	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
202404	chr6	157870671	157871030	+	0	NA	intron (NM_016224, intron 2 of 17)	intron (NM_016224, intron 2 of 17)	47604	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
224376	chr9	7975871	7977200	+	0	NA	Intergenic	Intergenic	-176757	NM_001318059	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
208818	chr7	73658821	73659080	+	0	NA	Intergenic	L1MB4|LINE|L1	-8881	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
20891	chr1	202149771	202151330	+	0	NA	intron (NR_037663, intron 8 of 9)	intron (NR_037663, intron 8 of 9)	-5807	NM_001256129	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
20405	chr1	198185601	198186150	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	28877	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
172029	chr4	994971	995130	+	0	NA	intron (NR_110313, intron 2 of 13)	AluSg|SINE|Alu	-1646	NM_022042	10861		NM_022042	ENSG00000145217	SLC26A1	CAON|CAON1|EDM4|HYSULF|SAT-1|SAT1	solute carrier family 26 member 1	protein-coding
70731	chr14	103354151	103354250	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	16351	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
81218	chr16	4514051	4514150	+	0	NA	exon (NM_013399, exon 3 of 6)	exon (NM_013399, exon 3 of 6)	18242	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
75973	chr15	70504371	70505080	+	0	NA	intron (NR_146562, intron 1 of 1)	intron (NR_146562, intron 1 of 1)	1203	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
215285	chr7	157224671	157224830	+	0	NA	intron (NM_014671, intron 16 of 22)	intron (NM_014671, intron 16 of 22)	85824	NM_014671	9690		NM_014671	ENSG00000009335	UBE3C	HECTH2|NDSMBA|NEDSMBA|RAUL	ubiquitin protein ligase E3C	protein-coding
52165	chr12	54291421	54292050	+	0	NA	TTS (NM_001136023)	TTS (NM_001136023)	4044	NM_006163	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
98416	chr17	46629871	46630030	+	0	NA	intron (NR_040116, intron 3 of 19).2	MLT1C|LTR|ERVL-MaLR	39216	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
73344	chr15	42066321	42066780	+	0	NA	TTS (NM_178034)	TTS (NM_178034)	-15847	NM_001206670	123745		NM_198442	ENSG00000188089	PLA2G4E	-	phospholipase A2 group IVE	protein-coding
121775	chr19	47770121	47770580	+	0	NA	Intergenic	Intergenic	-1510	NR_132382	106144593		NR_132382	ENSG00000269656	NOP53-AS1	GLTSCR2-AS1	NOP53 antisense RNA 1	ncRNA
920	chr1	1705251	1705880	+	0	NA	intron (NR_132739, intron 12 of 19)	intron (NR_132739, intron 12 of 19)	5626	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
38129	chr11	35249271	35249430	+	0	NA	Intergenic	L1ME3F|LINE|L1	86400	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
150336	chr21	42117171	42117800	+	0	NA	intron (NM_173568, intron 13 of 21)	intron (NM_173568, intron 13 of 21)	-8951	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
149486	chr21	32392451	32394000	+	0	NA	promoter-TSS (NM_014825)	promoter-TSS (NM_014825)	92	NR_026845	84996		NM_032910	ENSG00000256073	URB1-AS1	C21orf119|PRED84	URB1 antisense RNA 1 (head to head)	ncRNA
127643	chr2	43142301	43143400	+	0	NA	Intergenic	Intergenic	-40405	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
188037	chr5	149669451	149669750	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-60710	NM_001172698	133522		NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
158267	chr22	50325871	50326030	+	0	NA	intron (NM_001001794, intron 1 of 19)	L3|LINE|CR1	1062	NM_001001794	414918		NM_001001794	ENSG00000205593	DENND6B	AFI1B|FAM116B	DENN domain containing 6B	protein-coding
59682	chr13	29125921	29126350	+	0	NA	intron (NM_001384606, intron 4 of 14)	intron (NM_001384606, intron 4 of 14)	-302525	NM_015233	23281		NM_015233	ENSG00000132938	MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated scaffold protein 2	protein-coding
110742	chr19	2332051	2333830	+	0	NA	intron (NM_152988, intron 1 of 14)	intron (NM_152988, intron 1 of 14)	4256	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
193890	chr6	31596771	31597600	+	0	NA	Intergenic	Intergenic	-4179	NM_001145466	259197		NM_147130	ENSG00000204475	NCR3	1C7|CD337|LY117|MALS|NKp30	natural cytotoxicity triggering receptor 3	protein-coding
31230	chr10	91803551	91803650	+	0	NA	intron (NM_025235, intron 1 of 26)	AluJb|SINE|Alu	5174	NM_025235	80351		NM_025235	ENSG00000107854	TNKS2	ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6	tankyrase 2	protein-coding
171671	chr3	197714571	197714730	+	0	NA	intron (NM_014687, intron 2 of 19)	intron (NM_014687, intron 2 of 19)	22254	NM_014687	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
86954	chr16	68121271	68121930	+	0	NA	intron (NM_173165, intron 1 of 9)	AluJo|SINE|Alu	36230	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
229556	chr9	122940551	122941600	+	0	NA	promoter-TSS (NM_012197)	promoter-TSS (NM_012197)	55	NM_012197	23637		NM_012197	ENSG00000011454	RABGAP1	GAPCENA|TBC1D11	RAB GTPase activating protein 1	protein-coding
131925	chr2	98910551	98911030	+	0	NA	intron (NM_207362, intron 1 of 9)	MIRb|SINE|MIR	25435	NM_207362	343990		NM_207362	ENSG00000196872	CRACDL	C2orf55|KIAA1211L	CRACD like	protein-coding
61467	chr13	52201151	52201650	+	0	NA	Intergenic	Intergenic	-6933	NR_002816	100887750		NR_002816	ENSG00000291010	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
160141	chr3	20063101	20063300	+	0	NA	intron (NM_003884, intron 1 of 17)	AluJr|SINE|Alu	22754	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
142337	chr20	3710651	3711280	+	0	NA	intron (NM_023068, intron 1 of 21)	intron (NM_023068, intron 1 of 21)	1635	NM_023068	6614		NM_023068	ENSG00000088827	SIGLEC1	CD169|SIGLEC-1|SN	sialic acid binding Ig like lectin 1	protein-coding
105505	chr17	83099451	83099980	+	0	NA	Intergenic	Intergenic	18569	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
207238	chr7	43758001	43759850	+	0	NA	intron (NM_000712, intron 1 of 7)	CpG	245	NM_000712	644		NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA|BVRalpha	biliverdin reductase A	protein-coding
154499	chr22	35679571	35679750	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	31214	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
114419	chr19	12668351	12668450	+	0	NA	exon (NM_016145, exon 4 of 4)	exon (NM_016145, exon 4 of 4)	1015	NM_016145	51398		NM_016145	ENSG00000105583	WDR83OS	ASTERIX|C19orf56|PAT-10|PAT10|PTD008	WD repeat domain 83 opposite strand	protein-coding
28412	chr10	47754451	47755200	+	0	NA	intron (NM_031912, intron 7 of 7).2	intron (NM_031912, intron 7 of 7).2	7856	NM_181519	83849		NM_031912	ENSG00000204176	SYT15	CHR10SYT|SYT15B|sytXV	synaptotagmin 15	protein-coding
144769	chr20	36621021	36621280	+	0	NA	intron (NM_175077, intron 5 of 7)	intron (NM_175077, intron 5 of 7)	15371	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
147716	chr20	62368901	62369400	+	0	NA	Intergenic	Intergenic	-1838	NM_005560	3911		NM_005560	ENSG00000130702	LAMA5	BBDS2|NPHS26	laminin subunit alpha 5	protein-coding
37005	chr11	11995271	11996250	+	0	NA	intron (NM_001018057, intron 3 of 6)	intron (NM_001018057, intron 3 of 6)	12879	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
100486	chr17	61806121	61806650	+	0	NA	intron (NM_032043, intron 7 of 19)	intron (NM_032043, intron 7 of 19)	57143	NM_032043	83990		NM_032043	ENSG00000136492	BRIP1	BACH1|FANCJ|OF	BRCA1 interacting helicase 1	protein-coding
177127	chr4	108105851	108106200	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	60772	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
117466	chr19	19719921	19720180	+	0	NA	intron (NM_021030, intron 1 of 3)	L1MCa|LINE|L1	13062	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
36142	chr11	3129621	3130080	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	35460	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
39512	chr11	61067151	61067250	+	0	NA	Intergenic	L1ME3|LINE|L1	-26763	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
60782	chr13	45299251	45299880	+	0	NA	Intergenic	Intergenic	36882	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
184681	chr5	108382001	108383730	+	0	NA	promoter-TSS (NM_001163315)	promoter-TSS (NM_001163315)	-767	NM_001163315	64839		NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
38097	chr11	35212571	35213080	+	0	NA	intron (NM_001202555, intron 6 of 9)	intron (NM_001202555, intron 6 of 9)	49875	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
53203	chr12	62264551	62265150	+	0	NA	intron (NM_001351164, intron 1 of 21)	intron (NM_001351164, intron 1 of 21)	4446	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
181001	chr5	35826321	35827350	+	0	NA	Intergenic	Intergenic	-30056	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
137072	chr2	190908521	190909000	+	0	NA	intron (NM_014905, intron 6 of 17)	intron (NM_014905, intron 6 of 17)	27939	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
189949	chr5	177405851	177406350	+	0	NA	intron (NM_000505, intron 2 of 13)	intron (NM_000505, intron 2 of 13)	3464	NM_000505	2161		NM_000505	ENSG00000131187	F12	HAE3|HAEX|HAF	coagulation factor XII	protein-coding
64091	chr14	22600321	22600930	+	0	NA	intron (NM_022060, intron 1 of 6)	intron (NM_022060, intron 1 of 6)	2387	NM_022060	63874		NM_022060	ENSG00000100439	ABHD4	ABH4	abhydrolase domain containing 4, N-acyl phospholipase B	protein-coding
42071	chr11	67490821	67491180	+	0	NA	TTS (NR_106810)	TTS (NR_106810)	755	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
125182	chr2	10081751	10081930	+	0	NA	Intergenic	AluY|SINE|Alu	-1429	NM_001037160	192668		NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
119800	chr19	41332301	41332580	+	0	NA	intron (NM_000660, intron 5 of 6)	intron (NM_000660, intron 5 of 6)	21482	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
30251	chr10	75111131	75113030	+	0	NA	intron (NM_144660, intron 1 of 4)	intron (NM_144660, intron 1 of 4)	424	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
181334	chr5	40401851	40402280	+	0	NA	Intergenic	MIRc|SINE|MIR	-277850	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
90352	chr17	1202451	1202550	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	-15228	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
177292	chr4	109589271	109589630	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	29204	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
157685	chr22	46298421	46298880	+	0	NA	intron (NM_016426, intron 2 of 11)	intron (NM_016426, intron 2 of 11)	1780	NM_016426	51512		NM_016426	ENSG00000075218	GTSE1	B99	G2 and S-phase expressed 1	protein-coding
144835	chr20	36861251	36861350	+	0	NA	intron (NM_080627, intron 1 of 14)	intron (NM_080627, intron 1 of 14)	-1427	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
115315	chr19	14786151	14786530	+	0	NA	Intergenic	Intergenic	-7780	NM_013447	30817		NM_013447	ENSG00000127507	ADGRE2	CD312|CD97|EMR2|VBU	adhesion G protein-coupled receptor E2	protein-coding
155395	chr22	38322671	38323230	+	0	NA	intron (NM_001289912, intron 5 of 14)	L2a|LINE|L2	-4866	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
21504	chr1	205746001	205746950	+	0	NA	intron (NM_022731, intron 1 of 6)	(CA)n|Simple_repeat|Simple_repeat	3707	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
44154	chr11	96194201	96195050	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-146813	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
191521	chr6	11364151	11364650	+	0	NA	intron (NR_073131, intron 1 of 9)	MER68|LTR|ERVL	17948	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
68545	chr14	89324471	89325600	+	0	NA	intron (NM_001085471, intron 3 of 6)	MER3|DNA|hAT-Charlie	92198	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
117498	chr19	19863951	19864250	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1730	NM_001331134	56242		NM_021047	ENSG00000256771	ZNF253	BMZF-1|BMZF1|ZNF411	zinc finger protein 253	protein-coding
123822	chr19	55197501	55197950	+	0	NA	intron (NM_001161440, intron 6 of 17)	intron (NM_001161440, intron 6 of 17)	11776	NM_002842	5794		NM_002842	ENSG00000080031	PTPRH	R-PTP-H|SAP1	protein tyrosine phosphatase receptor type H	protein-coding
157418	chr22	45101871	45102100	+	0	NA	Intergenic	Intergenic	50599	NR_038957	100506714		NR_038956	ENSG00000226328	NUP50-DT	NUP50-AS1	NUP50 divergent transcript	ncRNA
39388	chr11	60251501	60251700	+	0	NA	Intergenic	Intergenic	-8463	NM_001351235	643680		NM_001351235	ENSG00000214787	MS4A4E	-	membrane spanning 4-domains A4E	protein-coding
220341	chr8	99012571	99013830	+	0	NA	promoter-TSS (NM_181661)	promoter-TSS (NM_181661)	-74	NM_017890	157680		NM_015243	ENSG00000132549	VPS13B	BLTP5B|CHS1|COH1	vacuolar protein sorting 13 homolog B	protein-coding
227729	chr9	93055601	93055800	+	0	NA	Intergenic	Intergenic	-2988	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
84631	chr16	30708901	30709100	+	0	NA	intron (NM_006662, intron 6 of 33)	AluSx1|SINE|Alu	-1537	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
171358	chr3	196065901	196066100	+	0	NA	intron (NM_001313966, intron 7 of 16)	AluSg|SINE|Alu	16090	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
187830	chr5	146877501	146878100	+	0	NA	intron (NM_181678, intron 2 of 10)	CpG	957	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
228171	chr9	97205651	97205830	+	0	NA	intron (NR_136286, intron 2 of 17)	L1PA3|LINE|L1	-32686	NR_036526	100499484		NR_036526	ENSG00000254876	SUGT1P4-STRA6LP	-	SUGT1P4-STRA6LP readthrough	pseudo
3632	chr1	16382251	16382550	+	0	NA	intron (NR_073500, intron 1 of 1)	AluSx|SINE|Alu	15158	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
202172	chr6	155417551	155417730	+	0	NA	intron (NM_015718, intron 10 of 13)	intron (NM_015718, intron 10 of 13)	38199	NM_015718	50508		NM_015718	ENSG00000074771	NOX3	GP91-3|MOX-2	NADPH oxidase 3	protein-coding
165212	chr3	72849701	72849930	+	0	NA	Intergenic	MIRb|SINE|MIR	-1370	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
60991	chr13	46753701	46754280	+	0	NA	TTS (NM_001164213)	TTS (NM_001164213)	43171	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
168908	chr3	152332321	152333630	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	8015	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
20356	chr1	197912751	197912850	+	0	NA	intron (NM_001014434, intron 1 of 5)	intron (NM_001014434, intron 1 of 5)	295	NM_001014434	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
33195	chr10	113681801	113682730	+	0	NA	intron (NM_001227, intron 1 of 6)	intron (NM_001227, intron 1 of 6)	2353	NM_033339	840		NM_001227	ENSG00000165806	CASP7	CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3	caspase 7	protein-coding
16880	chr1	155844621	155845280	+	0	NA	intron (NM_001282861, intron 2 of 20)	MER66-int|LTR|ERV1	12264	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
181280	chr5	39371321	39371580	+	0	NA	TTS (NM_001244871)	TTS (NM_001244871)	-6955	NM_001737	735		NM_001737	ENSG00000113600	C9	ARMD15|C9D	complement C9	protein-coding
107977	chr18	58605401	58605800	+	0	NA	intron (NM_052947, intron 3 of 12)	intron (NM_052947, intron 3 of 12)	4980	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
174543	chr4	40201971	40203100	+	0	NA	intron (NM_001278362, intron 2 of 3)	intron (NM_001278362, intron 2 of 3)	5504	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
165983	chr3	108085201	108085400	+	0	NA	intron (NM_198793, intron 1 of 8)	MIR|SINE|MIR	5731	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
237979	chrX	134237021	134237380	+	0	NA	promoter-TSS (NM_001353453)	promoter-TSS (NM_001353453)	-13	NM_001101357	347475		NM_001101357	ENSG00000203952	CCDC160	-	coiled-coil domain containing 160	protein-coding
78953	chr15	101293021	101293500	+	0	NA	intron (NM_003090, intron 1 of 8)	intron (NM_003090, intron 1 of 8)	1988	NR_135506	6627		NM_003090	ENSG00000131876	SNRPA1	Lea1|U2A'	small nuclear ribonucleoprotein polypeptide A'	protein-coding
105164	chr17	82262871	82263030	+	0	NA	intron (NM_139062, intron 2 of 9)	AluSx|SINE|Alu	10750	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
239335	chrY	19131201	19131600	+	0	NA	Intergenic	HERVIP10B3-int|LTR|ERV1	-53853	NR_001543	83869		NM_031932	ENSG00000176728	TTTY14	CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14	testis expressed transcript, Y-linked 14	ncRNA
172323	chr4	1680721	1681350	+	0	NA	intron (NM_001174070, intron 1 of 4)	L1MC1|LINE|L1	2956	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
92104	chr17	7576371	7576930	+	0	NA	promoter-TSS (NR_002604)	promoter-TSS (NR_002604)	-161	NR_002604	652966		NR_002604	ENSG00000238917	SNORD10	mgU6-77	small nucleolar RNA, C/D box 10	snoRNA
147133	chr20	54207651	54208950	+	0	NA	intron (NM_002623, intron 1 of 3)	CpG	213	NM_002623	5203		NM_002623	ENSG00000101132	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
161455	chr3	42163721	42164180	+	0	NA	intron (NM_014965, intron 1 of 12)	intron (NM_014965, intron 1 of 12)	3757	NM_014965	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
164176	chr3	56795071	56795230	+	0	NA	intron (NM_001289698, intron 2 of 10)	MER2|DNA|TcMar-Tigger	6799	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
159788	chr3	16320401	16320600	+	0	NA	intron (NM_015150, intron 9 of 9)	L2c|LINE|L2	55288	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
33160	chr10	112558801	112559000	+	0	NA	intron (NM_001365710, intron 5 of 7)	intron (NM_001365710, intron 5 of 7)	-75270	NR_036177	100422909		NR_036177	ENSG00000264763	MIR4295	-	microRNA 4295	ncRNA
71750	chr15	20774101	20774300	+	0	NA	Intergenic	Intergenic	-18049	NR_027992	606		NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
168658	chr3	150415451	150415750	+	0	NA	intron (NM_001303264, intron 1 of 2)	AluJr4|SINE|Alu	7302	NR_130136	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
170025	chr3	180990921	180991180	+	0	NA	Intergenic	MIRb|SINE|MIR	-1276	NR_033722	131118		NM_145261	ENSG00000205981	DNAJC19	PAM18|TIM14|TIMM14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding
172247	chr4	1354301	1354500	+	0	NA	intron (NM_001317935, intron 5 of 13)	intron (NM_001317935, intron 5 of 13)	6844	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
188210	chr5	150703671	150704230	+	0	NA	Intergenic	PRIMA4-int|LTR|ERV1	-2888	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
33408	chr10	118568071	118568730	+	0	NA	Intergenic	AluSx1|SINE|Alu	27248	NM_004248	2834		NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
15942	chr1	151827451	151828150	+	0	NA	intron (NM_005060, intron 2 of 10)	intron (NM_005060, intron 2 of 10)	-1704	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
220274	chr8	97774651	97777000	+	0	NA	promoter-TSS (NM_018407)	promoter-TSS (NM_018407)	37	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
79225	chr16	368951	369480	+	0	NA	exon (NM_006428, exon 3 of 6)	exon (NM_006428, exon 3 of 6)	1323	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
143012	chr20	20710671	20711120	+	0	NA	intron (NM_020343, intron 1 of 39)	intron (NM_020343, intron 1 of 39)	1749	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
153754	chr22	29386951	29387250	+	0	NA	intron (NM_001378564, intron 1 of 20)	intron (NM_001378564, intron 1 of 20)	1470	NM_001378565	162		NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2|KIDAR	adaptor related protein complex 1 subunit beta 1	protein-coding
193642	chr6	30827001	30827600	+	0	NA	intron (NR_130726, intron 1 of 1)	intron (NR_130726, intron 1 of 1)	3359	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
77358	chr15	82709301	82710400	+	0	NA	promoter-TSS (NM_001348440)	promoter-TSS (NM_001348440)	25	NM_001278512	8120		NM_004644	ENSG00000103723	AP3B2	DEE48|EIEE48|NAPTB	adaptor related protein complex 3 subunit beta 2	protein-coding
3450	chr1	15919221	15919950	+	0	NA	intron (NM_015001, intron 8 of 14)	intron (NM_015001, intron 8 of 14)	56516	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
104430	chr17	81075401	81075600	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	-7489	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
149722	chr21	34128021	34128280	+	0	NA	intron (NM_032476, intron 2 of 2)	intron (NM_032476, intron 2 of 2)	-52527	NR_027267	114036		NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
154234	chr22	31582321	31583050	+	0	NA	intron (NM_001007467, intron 12 of 32)	L1MB3|LINE|L1	38846	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
33694	chr10	120713621	120713880	+	0	NA	Intergenic	Intergenic	115801	NR_103717	404216		NM_001012711	ENSG00000177234	LINC01561	C10orf85	long intergenic non-protein coding RNA 1561	ncRNA
205206	chr7	7784651	7784750	+	0	NA	intron (NM_001302350, intron 3 of 4)	intron (NM_001302350, intron 3 of 4)	-66093	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
198579	chr6	107488601	107489170	+	0	NA	Intergenic	CpG	-1232	NM_018013	55084		NM_018013	ENSG00000112320	SOBP	JXC1|MRAMS	sine oculis binding protein homolog	protein-coding
39415	chr11	60857301	60857700	+	0	NA	Intergenic	Intergenic	-1550	NM_004778	11251		NM_004778	ENSG00000183134	PTGDR2	CD294|CRTH2|DL1R|DP2|GPR44	prostaglandin D2 receptor 2	protein-coding
184064	chr5	93213651	93213750	+	0	NA	Intergenic	L1PA2|LINE|L1	357643	NR_109825	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
22253	chr1	212620751	212621050	+	0	NA	TTS (NM_001030287)	TTS (NM_001030287)	-3574	NM_153606	149647		NM_153606	ENSG00000162771	GARIN4	FAM71A|GARI-L4|GARIL4	golgi associated RAB2 interactor family member 4	protein-coding
129255	chr2	68375801	68376280	+	0	NA	intron (NM_002664, intron 1 of 8)	intron (NM_002664, intron 1 of 8)	10758	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
141733	chr2	241870971	241872280	+	0	NA	intron (NM_173821, intron 1 of 1)	intron (NM_173821, intron 1 of 1)	1896	NM_173821	285093		NM_173821	ENSG00000188011	RTP5	C2orf85|CXXC11|Z3CXXC5	receptor transporter protein 5 (putative)	protein-coding
27050	chr10	27128521	27128980	+	0	NA	intron (NM_001253866, intron 7 of 17)	AluJo|SINE|Alu	25634	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
74628	chr15	60720621	60721950	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	39716	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
92605	chr17	9644921	9645880	+	0	NA	promoter-TSS (NM_153210)	promoter-TSS (NM_153210)	-117	NM_153210	124739		NM_153210	ENSG00000154914	USP43	-	ubiquitin specific peptidase 43	protein-coding
68442	chr14	81510321	81510580	+	0	NA	intron (NM_005065, intron 3 of 20)	L2a|LINE|L2	23403	NM_005065	6400		NM_005065	ENSG00000071537	SEL1L	Hrd3|PRO1063|SEL1-LIKE|SEL1L1	SEL1L adaptor subunit of SYVN1 ubiquitin ligase	protein-coding
166445	chr3	113950021	113950480	+	0	NA	intron (NM_173570, intron 2 of 5)	intron (NM_173570, intron 2 of 5)	2237	NM_001320467	254887		NM_173570	ENSG00000184307	ZDHHC23	DHHC-23|NIDD	zinc finger DHHC-type palmitoyltransferase 23	protein-coding
91633	chr17	5418271	5419200	+	0	NA	promoter-TSS (NM_001160266)	promoter-TSS (NM_001160266)	-906	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
232391	chr9	135977321	135977980	+	0	NA	Intergenic	Intergenic	-16277	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
203592	chr7	927171	927800	+	0	NA	promoter-TSS (NM_001284310)	promoter-TSS (NM_001284310)	-269	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
162058	chr3	46844251	46844700	+	0	NA	Intergenic	Intergenic	-10380	NR_160554	339906		NM_182702	ENSG00000293419	PRSS42P	PRSS42|TESSP2	serine protease 42, pseudogene	pseudo
49258	chr12	19458101	19458500	+	0	NA	intron (NM_001267043, intron 1 of 8)	intron (NM_001267043, intron 1 of 8)	17701	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
15812	chr1	151294771	151295100	+	0	NA	intron (NM_001369628, intron 9 of 12)	intron (NM_001369628, intron 9 of 12)	12636	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
54613	chr12	92568821	92569280	+	0	NA	Intergenic	HAL1ME|LINE|L1	102371	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
53863	chr12	70202101	70202300	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-40830	NM_001199302	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
93740	chr17	19800571	19800730	+	0	NA	intron (NM_014683, intron 16 of 26)	intron (NM_014683, intron 16 of 26)	-52352	NM_001330150	218		NM_000691	ENSG00000108602	ALDH3A1	ALDH3|ALDHIII	aldehyde dehydrogenase 3 family member A1	protein-coding
8010	chr1	38009001	38009800	+	0	NA	Intergenic	Intergenic	-3334	NM_016037	51118		NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11 small subunit processome component	protein-coding
115586	chr19	15933951	15934330	+	0	NA	intron (NM_021187, intron 1 of 11)	intron (NM_021187, intron 1 of 11)	726	NM_001128932	57834		NM_021187	ENSG00000171903	CYP4F11	CYPIVF11	cytochrome P450 family 4 subfamily F member 11	protein-coding
75600	chr15	67105101	67105900	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	-20216	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
47325	chr12	1795671	1797780	+	0	NA	intron (NM_172364, intron 35 of 37)	CpG	-23542	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
19643	chr1	180228851	180229150	+	0	NA	Intergenic	CpG	-1264	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
47473	chr12	3899071	3899430	+	0	NA	Intergenic	Intergenic	-25802	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
88661	chr16	85654851	85655150	+	0	NA	intron (NM_001278184, intron 4 of 14)	intron (NM_001278184, intron 4 of 14)	33954	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
217272	chr8	27340351	27341650	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	15436	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
153653	chr22	28802321	28803450	+	0	NA	Intergenic	Intergenic	-2313	NM_005080	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
2202	chr1	8661671	8662030	+	0	NA	intron (NM_001042681, intron 1 of 22)	L2a|LINE|L2	155790	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
154380	chr22	35150501	35150730	+	0	NA	intron (NR_126356, intron 4 of 5)	intron (NR_126356, intron 4 of 5)	80441	NR_126356	104310353		NR_126356	ENSG00000293220	LINC01399	-	long intergenic non-protein coding RNA 1399	ncRNA
100722	chr17	63883201	63883400	+	0	NA	Intergenic	AluSz|SINE|Alu	-1356	NM_022557	2689		NM_002059	ENSG00000136487	GH2	GH-V|GHB2|GHL|GHV|hGH-V	growth hormone 2	protein-coding
110405	chr19	1952351	1952530	+	0	NA	TTS (NR_033400)	TTS (NR_033400)	2109	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
169032	chr3	152692871	152693850	+	0	NA	Intergenic	L1PB1|LINE|L1	-141771	NM_002563	5028		NM_002563	ENSG00000169860	P2RY1	P2Y1|SARCC	purinergic receptor P2Y1	protein-coding
46276	chr11	124842451	124842550	+	0	NA	Intergenic	L2c|LINE|L2	-22932	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
215169	chr7	155660721	155661030	+	0	NA	intron (NM_053043, intron 1 of 17)	L1M4b|LINE|L1	16214	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
120077	chr19	42086401	42086800	+	0	NA	3' UTR (NM_002698, exon 14 of 14)	3' UTR (NM_002698, exon 14 of 14)	10434	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
5590	chr1	26031201	26031800	+	0	NA	exon (NM_004455, exon 6 of 11)	exon (NM_004455, exon 6 of 11)	9725	NM_004455	2134		NM_004455	ENSG00000158008	EXTL1	EXTL	exostosin like glycosyltransferase 1	protein-coding
170453	chr3	185915001	185915200	+	0	NA	3' UTR (NM_004593, exon 9 of 9)	3' UTR (NM_004593, exon 9 of 9)	22914	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
44655	chr11	110345601	110346000	+	0	NA	Intergenic	Intergenic	-9314	NR_135100	105369486		NR_135100		LINC02732	-	long intergenic non-protein coding RNA 2732	ncRNA
144381	chr20	35153651	35154200	+	0	NA	intron (NM_001355008, intron 5 of 14)	SVA_F|Retroposon|SVA	-6589	NR_026728	55741		NM_018217	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	ER degradation enhancing alpha-mannosidase like protein 2	protein-coding
221129	chr8	118258901	118259100	+	0	NA	intron (NM_001101676, intron 4 of 4)	intron (NM_001101676, intron 4 of 4)	-147174	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
40381	chr11	64000201	64001330	+	0	NA	intron (NM_014067, intron 4 of 10)	CpG-4376	14912	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
376	chr1	1036551	1036650	+	0	NA	intron (NM_198576, intron 3 of 35)	G-rich|Low_complexity|Low_complexity	2607	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
161023	chr3	37955871	37956230	+	0	NA	intron (NM_005808, intron 2 of 6)	intron (NM_005808, intron 2 of 6)	-13354	NR_029499	407015		NR_029499	ENSG00000199075	MIR26A1	MIR26A|MIRN26A1|mir-26a-1	microRNA 26a-1	ncRNA
66429	chr14	61526101	61526300	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	43994	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
13524	chr1	114778171	114778330	+	0	NA	intron (NM_025073, intron 3 of 4)	intron (NM_025073, intron 3 of 4)	2435	NR_049742	80143		NM_025073	ENSG00000052723	SIKE1	SIKE	suppressor of IKBKE 1	protein-coding
17726	chr1	158937871	158938430	+	0	NA	intron (NM_198930, intron 2 of 7)	intron (NM_198930, intron 2 of 7)	6598	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
46083	chr11	122834621	122834880	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3750	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
206133	chr7	27662271	27663850	+	0	NA	promoter-TSS (NM_152740)	promoter-TSS (NM_152740)	-177	NM_152740	11112		NM_152740	ENSG00000106049	HIBADH	NS5ATP1	3-hydroxyisobutyrate dehydrogenase	protein-coding
83579	chr16	28146451	28147130	+	0	NA	intron (NM_001270940, intron 9 of 24)	intron (NM_001270940, intron 9 of 24)	65175	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
153903	chr22	30305371	30305960	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	-16160	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
73006	chr15	40702021	40702530	+	0	NA	intron (NM_133487, intron 4 of 9)	intron (NM_133487, intron 4 of 9)	7101	NM_002875	5888		NM_002875	ENSG00000051180	RAD51	BRCC5|FANCR|HRAD51|HsRad51|HsT16930|MRMV2|RAD51A|RECA	RAD51 recombinase	protein-coding
176348	chr4	88377871	88378030	+	0	NA	promoter-TSS (NM_001165136)	promoter-TSS (NM_001165136)	-902	NM_017912	55008		NM_017912	ENSG00000138642	HERC6	-	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein-coding
141634	chr2	241701601	241704880	+	0	NA	intron (NM_032329, intron 1 of 7)	L2|LINE|L2	1201	NM_001330162	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
229471	chr9	122091321	122091580	+	0	NA	intron (NM_194252, intron 1 of 3)	intron (NM_194252, intron 1 of 3)	1858	NM_001139442	158135		NM_194252	ENSG00000175764	TTLL11	C9orf148|C9orf20|TTLL11-IT1|bA244O19.1	tubulin tyrosine ligase like 11	protein-coding
30450	chr10	79078571	79078730	+	0	NA	intron (NM_020338, intron 1 of 24)	AluJb|SINE|Alu	9684	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
124873	chr2	8306451	8306750	+	0	NA	intron (NR_034135, intron 2 of 8)	intron (NR_034135, intron 2 of 8)	21819	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
136686	chr2	181120471	181120630	+	0	NA	Intergenic	Intergenic	-3287	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
91354	chr17	4509401	4510130	+	0	NA	intron (NM_001124758, intron 1 of 12)	intron (NM_001124758, intron 1 of 12)	10884	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
148186	chr20	63547151	63547250	+	0	NA	exon (NM_080823, exon 1 of 8)	exon (NM_080823, exon 1 of 8)	304	NM_080823	6725		NM_080823	ENSG00000125508	SRMS	C20orf148|PTK70|SRM|dJ697K14.1	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding
236180	chrX	65599671	65600380	+	0	NA	Intergenic	Intergenic	-47604	NR_033742	83957		NM_032033	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
34583	chr10	133243721	133243980	+	0	NA	Intergenic	Intergenic	3770	NR_030170	574448		NR_030170	ENSG00000284219	MIR202	MIRN202|hsa-mir-202|mir-202	microRNA 202	ncRNA
182637	chr5	67065451	67065850	+	0	NA	intron (NM_015183, intron 4 of 27)	intron (NM_015183, intron 4 of 27)	60995	NM_001290227	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
50249	chr12	46251221	46251480	+	0	NA	intron (NM_001077484, intron 1 of 16)	L1PA6|LINE|L1	15166	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
26766	chr10	22752301	22752500	+	0	NA	Intergenic	Intergenic	-37822	NM_005028	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
123926	chr19	55365751	55366480	+	0	NA	exon (NM_000641, exon 5 of 5)	exon (NM_000641, exon 5 of 5)	-2855	NM_001145402	284418		NM_001145402	ENSG00000180043	GARIN5B	C19orf16|FAM71E2	golgi associated RAB2 interactor family member 5B	protein-coding
194125	chr6	31966551	31966930	+	0	NA	exon (NM_006929, exon 19 of 28).3	exon (NM_006929, exon 19 of 28).3	-4435	NR_026717	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
211691	chr7	106679351	106679650	+	0	NA	Intergenic	Intergenic	-18342	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
61784	chr13	75300201	75300400	+	0	NA	intron (NM_014832, intron 16 of 20)	intron (NM_014832, intron 16 of 20)	59712	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
219152	chr8	66431461	66431730	+	0	NA	promoter-TSS (NM_144650)	promoter-TSS (NM_144650)	-909	NM_144650	137872		NM_144650	ENSG00000147576	ADHFE1	ADH8|HMFT2263|HOT	alcohol dehydrogenase iron containing 1	protein-coding
79672	chr16	1241801	1242400	+	0	NA	exon (NM_003294, exon 6 of 6)	exon (NM_003294, exon 6 of 6)	1395	NM_003294	7177		NM_003294	ENSG00000172236	TPSAB1	TPS1|TPS2|TPSB1|TPSB2|Tryptase-2	tryptase alpha/beta 1	protein-coding
112409	chr19	6198471	6198630	+	0	NA	Intergenic	Intergenic	62883	NM_001289179	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
32893	chr10	110159671	110159830	+	0	NA	Intergenic	L1MB8|LINE|L1	-7770	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
81026	chr16	4262971	4263130	+	0	NA	intron (NM_003223, intron 1 of 6)	AluJr|SINE|Alu	-9261	NR_039999	100507501		NR_039999		LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA
80728	chr16	3105051	3107480	+	0	NA	Intergenic	CpG	-6314	NM_001278158	7755		NM_003456	ENSG00000122386	ZNF205	RhitH|ZNF210|Zfp13	zinc finger protein 205	protein-coding
51466	chr12	52060171	52060930	+	0	NA	Intergenic	Intergenic	9108	NM_173157	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
168244	chr3	141380451	141381030	+	0	NA	intron (NM_001376119, intron 2 of 3)	intron (NM_001376119, intron 2 of 3)	-4065	NM_001376143	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
199282	chr6	111873101	111874330	+	0	NA	promoter-TSS (NM_153047)	promoter-TSS (NM_153047)	-263	NM_002037	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
32922	chr10	110223501	110223780	+	0	NA	intron (NM_001008541, intron 1 of 4)	intron (NM_001008541, intron 1 of 4)	-2356	NM_005962	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
171727	chr3	197951251	197951350	+	0	NA	exon (NM_001316311, exon 3 of 5)	exon (NM_001316311, exon 3 of 5)	1110	NM_001316311	6165		NM_000996	ENSG00000182899	RPL35A	DBA5|L35A|eL33	ribosomal protein L35a	protein-coding
141116	chr2	238870971	238871300	+	0	NA	intron (NM_001271893, intron 1 of 1)	(AC)n|Simple_repeat|Simple_repeat	23050	NM_001271893	117581		NM_057179	ENSG00000233608	TWIST2	AMS|BBRSAY|DERMO1|FFDD3|SETLSS|bHLHa39	twist family bHLH transcription factor 2	protein-coding
161329	chr3	39498521	39498880	+	0	NA	intron (NR_103506, intron 2 of 2)	intron (NR_103506, intron 2 of 2)	31020	NM_001278322	4336		NM_182935	ENSG00000168314	MOBP	-	myelin associated oligodendrocyte basic protein	protein-coding
20502	chr1	198657591	198658230	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	18870	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
199913	chr6	127874901	127875100	+	0	NA	intron (NM_001164687, intron 1 of 5).2	MER1B|DNA|hAT-Charlie	-19812	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
221994	chr8	130008251	130008750	+	0	NA	promoter-TSS (NR_049826)	promoter-TSS (NR_049826)	-47	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
35439	chr11	1445021	1445550	+	0	NA	intron (NM_001256630, intron 9 of 19)	CpG	34133	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
115807	chr19	16428901	16430100	+	0	NA	intron (NM_021235, intron 7 of 22)	intron (NM_021235, intron 7 of 22)	42470	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
31431	chr10	95790921	95791380	+	0	NA	intron (NR_038444, intron 4 of 5)	L3|LINE|CR1	34987	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
97299	chr17	43215701	43216100	+	0	NA	exon (NM_145041, exon 5 of 9)	exon (NM_145041, exon 5 of 9)	4025	NM_001291586	113277		NM_145041	ENSG00000184988	TMEM106A	-	transmembrane protein 106A	protein-coding
96762	chr17	41717301	41717730	+	0	NA	TTS (NM_001367462)	TTS (NM_001367462)	5184	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
214290	chr7	149071471	149072430	+	0	NA	exon (NM_152411, exon 4 of 4)	exon (NM_152411, exon 4 of 4)	18768	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
204414	chr7	3094801	3095680	+	0	NA	Intergenic	Intergenic	-51373	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
173538	chr4	10075451	10075550	+	0	NA	intron (NM_017491, intron 14 of 14)	intron (NM_017491, intron 14 of 14)	3192	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
80183	chr16	2125871	2126030	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-7169	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
121144	chr19	46265051	46265630	+	0	NA	Intergenic	Intergenic	-31702	NM_152795	64344		NM_022462	ENSG00000124440	HIF3A	HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3 subunit alpha	protein-coding
77196	chr15	80779021	80779750	+	0	NA	promoter-TSS (NM_018689)	promoter-TSS (NM_018689)	15	NM_018689	57214		NM_018689	ENSG00000103888	CEMIP	CCSP1|CEMIP1|HYBID|KIAA1199|TMEM2L	cell migration inducing hyaluronidase 1	protein-coding
7327	chr1	32678721	32678980	+	0	NA	intron (NM_005610, intron 11 of 11)	AluSz|SINE|Alu	23920	NM_030786	81493		NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
55983	chr12	110245551	110245880	+	0	NA	Intergenic	Intergenic	-35532	NM_170665	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
183554	chr5	80132971	80133380	+	0	NA	intron (NR_126061, intron 11 of 13)	MSTA|LTR|ERVL-MaLR	-49510	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
135085	chr2	157261121	157261400	+	0	NA	intron (NM_014568, intron 1 of 9)	intron (NM_014568, intron 1 of 9)	3555	NM_001329868	11227		NM_014568	ENSG00000136542	GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
28515	chr10	50387721	50388030	+	0	NA	intron (NM_147156, intron 6 of 10)	MER57B1|LTR|ERV1	-136359	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
146238	chr20	48822871	48823300	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	4914	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
196967	chr6	53020071	53020230	+	0	NA	intron (NM_001375400, intron 6 of 14)	intron (NM_001375400, intron 6 of 14)	24530	NR_001445	125050		NR_001445	ENSG00000202198	RN7SK	7SK	RNA component of 7SK nuclear ribonucleoprotein	snRNA
134483	chr2	143260871	143261330	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	131681	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
127175	chr2	38370051	38370150	+	0	NA	intron (NM_001330462, intron 1 of 13)	AluYe5|SINE|Alu	6430	NM_001330460	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
52664	chr12	56335671	56336030	+	0	NA	Intergenic	AluJb|SINE|Alu	-1850	NM_014871	9924		NM_014871	ENSG00000135473	PAN2	USP52	poly(A) specific ribonuclease subunit PAN2	protein-coding
4600	chr1	22084901	22085330	+	0	NA	intron (NM_044472, intron 3 of 5)	AluSx|SINE|Alu	32406	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
133776	chr2	127676971	127677130	+	0	NA	intron (NM_001161404, intron 1 of 9)	intron (NM_001161404, intron 1 of 9)	-1520	NM_001136037	55679		NM_017980	ENSG00000072163	LIMS2	LGMD2W|MDRCMTT|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
155672	chr22	39031971	39032330	+	0	NA	intron (NM_152426, intron 6 of 6)	intron (NM_152426, intron 6 of 6)	-8714	NM_145298	200316		NM_145298	ENSG00000128394	APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	apolipoprotein B mRNA editing enzyme catalytic subunit 3F	protein-coding
197823	chr6	87741221	87741480	+	0	NA	Intergenic	L2c|LINE|L2	-39117	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
212138	chr7	116512701	116512900	+	0	NA	Intergenic	Intergenic	-12209	NM_001172895	857		NM_001753	ENSG00000105974	CAV1	BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21	caveolin 1	protein-coding
206716	chr7	36532921	36533180	+	0	NA	intron (NM_001177506, intron 16 of 21)	intron (NM_001177506, intron 16 of 21)	67070	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
90506	chr17	1459571	1459730	+	0	NA	Intergenic	AluY|SINE|Alu	-3418	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
178629	chr4	152138501	152138710	+	0	NA	Intergenic	Intergenic	37787	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
131796	chr2	98515021	98515780	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	69390	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
47095	chr12	640551	640650	+	0	NA	intron (NR_122124, intron 3 of 4)	AluSz6|SINE|Alu	3036	NM_001294346	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
136263	chr2	174674871	174675030	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	7949	NM_001077269	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
3116	chr1	12340621	12341000	+	0	NA	intron (NM_015378, intron 40 of 69)	intron (NM_015378, intron 40 of 69)	110780	NM_018156	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
7375	chr1	32876271	32876980	+	0	NA	Intergenic	Intergenic	-4141	NM_001171941	252995		NM_153756	ENSG00000160097	FNDC5	FRCP2|irisin	fibronectin type III domain containing 5	protein-coding
66501	chr14	61703321	61704130	+	0	NA	intron (NM_001243084, intron 1 of 14)	intron (NM_001243084, intron 1 of 14)	6103	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
234395	chrX	16695021	16695500	+	0	NA	intron (NM_175859, intron 4 of 18)	intron (NM_175859, intron 4 of 18)	16957	NM_001144002	56474		NM_019857	ENSG00000047230	CTPS2	GATD5B	CTP synthase 2	protein-coding
215237	chr7	156895051	156896150	+	0	NA	Intergenic	L2|LINE|L2	-2392	NR_146959	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
85859	chr16	57027921	57028850	+	0	NA	non-coding (NR_169515, exon 8 of 48)	non-coding (NR_169515, exon 8 of 48)	38828	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
59338	chr13	24555021	24555350	+	0	NA	Intergenic	LTR13|LTR|ERVK	-13465	NR_158454	105370295		NR_158453	ENSG00000287376	LOC105370295	-	uncharacterized LOC105370295	ncRNA
81851	chr16	11613551	11614580	+	0	NA	Intergenic	Intergenic	-26599	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
42263	chr11	68208471	68208630	+	0	NA	intron (NR_161378, intron 1 of 9)	intron (NR_161378, intron 1 of 9)	4746	NM_001369426	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
216781	chr8	22509771	22510130	+	0	NA	intron (NM_005605, intron 4 of 13)	AluSx4|SINE|Alu	-41977	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
2239	chr1	8871501	8872400	+	0	NA	exon (NM_001353346, exon 3 of 12)	exon (NM_001353346, exon 3 of 12)	-5360	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
45340	chr11	118226451	118227180	+	0	NA	non-coding (NR_104404, exon 3 of 3)	non-coding (NR_104404, exon 3 of 3)	-1804	NM_001286570	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
602	chr1	1299951	1300550	+	0	NA	intron (NM_030649, intron 6 of 23)	intron (NM_030649, intron 6 of 23)	-4080	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
109083	chr18	79950901	79952850	+	0	NA	promoter-TSS (NM_025078)	promoter-TSS (NM_025078)	-222	NM_025078	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
47060	chr12	550751	551480	+	0	NA	intron (NM_173593, intron 11 of 19)	intron (NM_173593, intron 11 of 19)	35371	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
233724	chrX	1353751	1354350	+	0	NA	intron (NM_001267713, intron 4 of 9).2	intron (NM_001267713, intron 4 of 9).2	17265	NM_002183	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
78459	chr15	92881071	92881430	+	0	NA	Intergenic	Intergenic	-1593	NR_037600	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
44722	chr11	111764771	111764930	+	0	NA	exon (NM_181699, exon 3 of 16)	exon (NM_181699, exon 3 of 16)	1539	NM_001177562	5519		NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
208940	chr7	74115351	74115650	+	0	NA	intron (NM_001204426, intron 11 of 14)	intron (NM_001204426, intron 11 of 14)	22283	NM_001204426	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
100895	chr17	64395401	64395600	+	0	NA	Intergenic	AluSx|SINE|Alu	-4640	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
197241	chr6	69795871	69797630	+	0	NA	promoter-TSS (NM_001367272)	promoter-TSS (NM_001367272)	-141	NM_001367271	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
150203	chr21	39377801	39378380	+	0	NA	Intergenic	AluSx|SINE|Alu	-2154	NR_146614	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
81158	chr16	4420221	4420900	+	0	NA	Intergenic	Intergenic	-3964	NM_024535	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
239014	chrY	2912901	2913380	+	0	NA	Intergenic	L1M1|LINE|L1	-22241	NM_001369706	7544		NM_003411	ENSG00000067646	ZFY	ZNF911	zinc finger protein Y-linked	protein-coding
142385	chr20	3810501	3812580	+	0	NA	non-coding (NR_109859, exon 3 of 4)	non-coding (NR_109859, exon 3 of 4)	3046	NR_109859	101929125		NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
24690	chr1	247212151	247212680	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-10355	NR_037480	100500849		NR_037480	ENSG00000283881	MIR3916	mir-3916	microRNA 3916	ncRNA
16406	chr1	154444921	154445600	+	0	NA	intron (NM_001382771, intron 7 of 10)	intron (NM_001382771, intron 7 of 10)	-38696	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
130594	chr2	85867301	85867500	+	0	NA	intron (NM_001363847, intron 1 of 5)	intron (NM_001363847, intron 1 of 5)	270	NM_001042437	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
29268	chr10	69173971	69174530	+	0	NA	3' UTR (NM_004896, exon 9 of 9)	3' UTR (NM_004896, exon 9 of 9)	-5984	NM_003171	6832		NM_003171	ENSG00000156502	SUPV3L1	SUV3	Suv3 like RNA helicase	protein-coding
17203	chr1	156256701	156256900	+	0	NA	intron (NM_001323614, intron 15 of 20)	intron (NM_001323614, intron 15 of 20)	-8683	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
28134	chr10	43438271	43438650	+	0	NA	intron (NM_001355444, intron 1 of 3)	AluSx|SINE|Alu	1349	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
63727	chr14	21212001	21212200	+	0	NA	intron (NM_001077443, intron 5 of 7)	intron (NM_001077443, intron 5 of 7)	-5200	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
181015	chr5	35855201	35855750	+	0	NA	Intergenic	Intergenic	-1416	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
223974	chr9	2021471	2021950	+	0	NA	promoter-TSS (NM_001289396)	promoter-TSS (NM_001289396)	-235	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
62143	chr13	95740371	95740530	+	0	NA	intron (NM_006260, intron 4 of 11)	L1PA2|LINE|L1	63311	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
144506	chr20	35691551	35691850	+	0	NA	intron (NM_021100, intron 4 of 12)	AluSx|SINE|Alu	7652	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
208696	chr7	73266801	73267200	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	41826	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
108190	chr18	63099651	63099750	+	0	NA	Intergenic	Intergenic	220069	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
67709	chr14	73325401	73326380	+	0	NA	intron (NM_003744, intron 4 of 11)	L1MD2|LINE|L1	-79889	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
140083	chr2	231448451	231448550	+	0	NA	Intergenic	AluSx3|SINE|Alu	7436	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
139217	chr2	219287421	219287880	+	0	NA	TTS (NM_006736)	TTS (NM_006736)	6550	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
209219	chr7	75496471	75496630	+	0	NA	intron (NM_001306141, intron 2 of 7)	intron (NM_001306141, intron 2 of 7)	2923	NM_001306141	442590		NM_001099435	ENSG00000170092	SPDYE5	-	speedy/RINGO cell cycle regulator family member E5	protein-coding
23815	chr1	234403121	234403380	+	0	NA	intron (NM_005646, intron 24 of 29)	intron (NM_005646, intron 24 of 29)	29549	NM_001301733	388753		NM_001012985	ENSG00000168275	COA6	C1orf31|CEMCOX4|MC4DN13	cytochrome c oxidase assembly factor 6	protein-coding
188085	chr5	150206201	150206650	+	0	NA	intron (NM_014228, intron 13 of 13)	MER63A|DNA|hAT-Blackjack	16363	NM_014228	6534		NM_014228	ENSG00000011083	SLC6A7	PROT	solute carrier family 6 member 7	protein-coding
24665	chr1	247110901	247112300	+	0	NA	non-coding (NR_167894, exon 1 of 1)	non-coding (NR_167894, exon 1 of 1)	817	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
198546	chr6	106561601	106561800	+	0	NA	intron (NM_001371242, intron 20 of 21)	intron (NM_001371242, intron 20 of 21)	49845	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
226983	chr9	83055021	83055300	+	0	NA	intron (NM_152573, intron 1 of 16)	L1HS|LINE|L1	7982	NM_152573	158158		NM_152573	ENSG00000165105	RASEF	RAB45|TSG	RAS and EF-hand domain containing	protein-coding
196355	chr6	43224051	43226000	+	0	NA	TTS (NM_199184)	TTS (NM_199184)	4456	NM_199184	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
149895	chr21	36112471	36113480	+	0	NA	intron (NR_040084, intron 1 of 3)	intron (NR_040084, intron 1 of 3)	8094	NR_147887	105369306		NR_147887	ENSG00000233393	LOC105369306	-	uncharacterized LOC105369306	ncRNA
115301	chr19	14672171	14672580	+	0	NA	intron (NM_001289158, intron 1 of 14)	MIR3|SINE|MIR	2469	NM_001289159	84658		NM_032571	ENSG00000131355	ADGRE3	EMR3	adhesion G protein-coupled receptor E3	protein-coding
213671	chr7	140003971	140004130	+	0	NA	intron (NM_030984, intron 9 of 11)	MLT1O|LTR|ERVL-MaLR	58901	NM_022750	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
184408	chr5	98915121	98915380	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-13312	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
125354	chr2	11071371	11071530	+	0	NA	Intergenic	MER61B|LTR|ERV1	60726	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
115034	chr19	14111851	14112350	+	0	NA	intron (NM_002730, intron 1 of 9)	intron (NM_002730, intron 1 of 9)	2091	NM_207518	5566		NM_002730	ENSG00000072062	PRKACA	CAFD1|PKACA|PPNAD4	protein kinase cAMP-activated catalytic subunit alpha	protein-coding
226212	chr9	65677371	65677530	+	0	NA	intron (NR_104600, intron 2 of 3)	intron (NR_104600, intron 2 of 3)	1522	NM_001363751	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
233623	chrX	437601	438180	+	0	NA	Intergenic	CpG	-50983	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
12000	chr1	95072501	95073700	+	0	NA	promoter-TSS (NR_131032)	promoter-TSS (NR_131032)	-149	NR_131032	199857		NM_144988	ENSG00000172339	ALG14	CMS15|IDDEBF|MEPCA	ALG14 UDP-N-acetylglucosaminyltransferase subunit	protein-coding
63915	chr14	21964151	21964450	+	0	NA	Intergenic	L1MA4A|LINE|L1	-293283	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
237842	chrX	130094501	130095350	+	0	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	15572	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
46756	chr11	129695521	129696270	+	0	NA	Intergenic	Intergenic	-78626	NR_120582	101929557		NR_120582	ENSG00000281097	LINC01395	-	long intergenic non-protein coding RNA 1395	ncRNA
213358	chr7	135661651	135663430	+	0	NA	promoter-TSS (NM_001130929)	promoter-TSS (NM_001130929)	26	NM_001130929	647087		NM_001130929	ENSG00000243317	STMP1	C7orf73|Mm47|Mtlbn|PL-5283	short transmembrane mitochondrial protein 1	protein-coding
43498	chr11	78465071	78465950	+	0	NA	intron (NM_024678, intron 11 of 13)	intron (NM_024678, intron 11 of 13)	-35674	NR_120564	101928865		NR_120564	ENSG00000251323	LINC02728	-	long intergenic non-protein coding RNA 2728	ncRNA
159439	chr3	13656371	13656530	+	0	NA	intron (NR_027103, intron 1 of 5)	MIRb|SINE|MIR	5729	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
140389	chr2	233070351	233071050	+	0	NA	intron (NM_001017915, intron 1 of 26).2	AluSx4|SINE|Alu	10358	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
203747	chr7	1157721	1158430	+	0	NA	intron (NM_001365383, intron 2 of 5)	intron (NM_001365383, intron 2 of 5)	2121	NM_001365381	90637		NM_182491	ENSG00000178381	ZFAND2A	AIRAP	zinc finger AN1-type containing 2A	protein-coding
133749	chr2	127513051	127513150	+	0	NA	intron (NM_017969, intron 2 of 13)	AluSx|SINE|Alu	13389	NM_017969	55677		NM_017969	ENSG00000163166	IWS1	-	interacts with SUPT6H, CTD assembly factor 1	protein-coding
208668	chr7	73165171	73165330	+	0	NA	intron (NR_002206, intron 1 of 23)	intron (NR_002206, intron 1 of 23)	-9801	NM_001382504	643862		NM_001382504	ENSG00000274570	SPDYE10	SPDYE10P	speedy/RINGO cell cycle regulator family member E10	protein-coding
172874	chr4	3355301	3355500	+	0	NA	intron (NM_198229, intron 3 of 17)	L1ME3B|LINE|L1	-14798	NM_198227	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
223038	chr8	143360621	143361900	+	0	NA	Intergenic	Intergenic	-1283	NM_001258447	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
232436	chr9	136108471	136108630	+	0	NA	Intergenic	Intergenic	-9242	NR_165242	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
49778	chr12	31883001	31883200	+	0	NA	intron (NR_135029, intron 1 of 1)	LTR12|LTR|ERV1	4103	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
201465	chr6	148747501	148749080	+	0	NA	intron (NM_005715, intron 1 of 7)	CpG	1260	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
225702	chr9	36577451	36577550	+	0	NA	intron (NM_001256693, intron 1 of 15)	AluSx|SINE|Alu	4605	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
30111	chr10	73996271	73996630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1666	NM_014000	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
44214	chr11	96310951	96311050	+	0	NA	intron (NM_032427, intron 1 of 4)	MIRb|SINE|MIR	-30438	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
11587	chr1	91555421	91556980	+	0	NA	Intergenic	Intergenic	55092	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
115978	chr19	17067051	17068150	+	0	NA	intron (NM_001011699, intron 3 of 10)	intron (NM_001011699, intron 3 of 10)	7852	NM_033417	93323		NM_033417	ENSG00000131351	HAUS8	DGT4|HICE1|NY-SAR-48	HAUS augmin like complex subunit 8	protein-coding
3323	chr1	15418901	15419730	+	0	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	9427	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
43105	chr11	74988501	74989900	+	0	NA	intron (NM_001367863, intron 2 of 2)	intron (NM_001367863, intron 2 of 2)	267	NM_001367866	10825		NM_006656	ENSG00000162139	NEU3	SIAL3	neuraminidase 3	protein-coding
215010	chr7	152385371	152385530	+	0	NA	intron (NM_170606, intron 1 of 58)	AluYa5|SINE|Alu	50553	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
105511	chr17	83107021	83107430	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	26079	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
30818	chr10	85741621	85741980	+	0	NA	intron (NM_017551, intron 8 of 15)	L2a|LINE|L2	164069	NR_038986	100507470		NR_038986	ENSG00000234942	GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
16355	chr1	154330701	154331100	+	0	NA	exon (NM_001370596, exon 4 of 28)	exon (NM_001370596, exon 4 of 28)	2102	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
105836	chr18	2984801	2985100	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	26997	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
106364	chr18	13266221	13267780	+	0	NA	intron (NM_001378100, intron 1 of 6)	Tigger10|DNA|TcMar-Tigger	-10362	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
144887	chr20	36928071	36928480	+	0	NA	intron (NM_001363733, intron 5 of 15)	AluY|SINE|Alu	23433	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
157637	chr22	46112851	46113650	+	0	NA	promoter-TSS (NR_039920)	promoter-TSS (NR_039920)	-316	NR_039920	100616143		NR_039920	ENSG00000284175	MIR4763	-	microRNA 4763	ncRNA
192121	chr6	16743271	16743900	+	0	NA	intron (NR_152112, intron 1 of 1)	intron (NR_152112, intron 1 of 1)	16599	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
239387	chrY	21246651	21247330	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	139370	NM_001282471	100533178		NM_001282471		PRORY	CYorf17	PRORY Y-linked lncRNA	ncRNA
74446	chr15	59522721	59523530	+	0	NA	3' UTR (NM_152450, exon 9 of 9)	3' UTR (NM_152450, exon 9 of 9)	84939	NM_152450	145773		NM_152450	ENSG00000157470	FAM81A	-	family with sequence similarity 81 member A	protein-coding
109389	chr19	659071	659900	+	0	NA	intron (NM_194460, intron 1 of 8)	intron (NM_194460, intron 1 of 8)	3729	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
71471	chr14	105899271	105899630	+	0	NA	Intergenic	Intergenic	-18529	NR_026800	9834		NM_014151	ENSG00000226777	FAM30A	C14orf110|HSPC053|KIAA0125	family with sequence similarity 30 member A	ncRNA
22773	chr1	224412871	224413230	+	0	NA	intron (NM_001115113, intron 6 of 13)	AluSx|SINE|Alu	-14739	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
75479	chr15	66251571	66251930	+	0	NA	intron (NR_169558, intron 1 of 22)	MIR3|SINE|MIR	2000	NR_169556	84465		NM_032445	ENSG00000157890	MEGF11	-	multiple EGF like domains 11	protein-coding
131768	chr2	98475471	98475830	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	29640	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
235499	chrX	47142601	47142800	+	0	NA	exon (NM_019056, exon 2 of 3)	exon (NM_019056, exon 2 of 3)	2002	NM_001135998	54539		NM_019056	ENSG00000147123	NDUFB11	CI-ESSS|ESSS|MC1DN30|NP17.3|Np15|P17.3	NADH:ubiquinone oxidoreductase subunit B11	protein-coding
105497	chr17	83092801	83093000	+	0	NA	intron (NM_001004431, intron 2 of 3).2	intron (NM_001004431, intron 2 of 3).2	11754	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
116115	chr19	17314721	17314980	+	0	NA	intron (NM_024050, intron 3 of 4)	intron (NM_024050, intron 3 of 4)	5287	NM_024050	79016		NM_024050	ENSG00000130311	DDA1	C19orf58|PCIA1	DET1 and DDB1 associated 1	protein-coding
156195	chr22	40277871	40278250	+	0	NA	intron (NM_015088, intron 8 of 20)	intron (NM_015088, intron 8 of 20)	-68440	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
58563	chr12	132413621	132414180	+	0	NA	Intergenic	Intergenic	-76251	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
201572	chr6	149328951	149329050	+	0	NA	intron (NM_015093, intron 1 of 8)	intron (NM_015093, intron 1 of 8)	10700	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
8989	chr1	44650871	44651430	+	0	NA	3' UTR (NM_001319956, exon 15 of 15)	3' UTR (NM_001319956, exon 15 of 15)	19182	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
1728	chr1	5915971	5916280	+	0	NA	intron (NR_111987, intron 11 of 32)	intron (NR_111987, intron 11 of 32)	-53384	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
80830	chr16	3485221	3485480	+	0	NA	TTS (NR_106741)	TTS (NR_106741)	119	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
189872	chr5	177306551	177306650	+	0	NA	TTS (NM_031300)	TTS (NM_031300)	2801	NM_001271828	27166		NM_013237	ENSG00000169230	PRELID1	CGI-106|PRELI|PX19|SBBI12	PRELI domain containing 1	protein-coding
84511	chr16	30509471	30509630	+	0	NA	intron (NM_002209, intron 21 of 30)	L1M5|LINE|L1	5631	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
120226	chr19	42312771	42314050	+	0	NA	exon (NM_001366910, exon 1 of 15)	exon (NM_001366910, exon 1 of 15)	101	NM_173633	284339		NM_173633	ENSG00000167619	TMEM145	-	transmembrane protein 145	protein-coding
49941	chr12	39978601	39978800	+	0	NA	intron (NM_052885, intron 3 of 9)	L1PA2|LINE|L1	127381	NM_052885	114134		NM_052885	ENSG00000151229	SLC2A13	HMIT	solute carrier family 2 member 13	protein-coding
139030	chr2	218408551	218408880	+	0	NA	Intergenic	Intergenic	6069	NR_029500	407017		NR_029500	ENSG00000199121	MIR26B	MIRN26B|hsa-mir-26b|miR-26b	microRNA 26b	ncRNA
39632	chr11	61508171	61508700	+	0	NA	promoter-TSS (NR_039708)	promoter-TSS (NR_039708)	-161	NR_039708	100616470		NR_039708	ENSG00000266006	MIR4488	mir-4488	microRNA 4488	ncRNA
126382	chr2	27494751	27495630	+	0	NA	promoter-TSS (NM_022823)	promoter-TSS (NM_022823)	10	NM_022823	64838		NM_022823	ENSG00000115226	FNDC4	FRCP1	fibronectin type III domain containing 4	protein-coding
102899	chr17	76539671	76539980	+	0	NA	promoter-TSS (NM_001077620)	promoter-TSS (NM_001077620)	-219	NM_001077620	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
232897	chr9	136852101	136853000	+	0	NA	intron (NM_206920, intron 1 of 26)	intron (NM_206920, intron 1 of 26)	204	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
81396	chr16	5116221	5116480	+	0	NA	Intergenic	Intergenic	-18530	NM_001289029	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
18824	chr1	167659501	167659700	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	29368	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
51280	chr12	51214301	51214880	+	0	NA	intron (NM_001368008, intron 1 of 2)	intron (NM_001368008, intron 1 of 2)	2715	NM_001368008	5463		NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
48007	chr12	6926671	6926850	+	0	NA	intron (NM_001007026, intron 1 of 9)	AluSz|SINE|Alu	-1199	NM_001940	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
88879	chr16	87706621	87706880	+	0	NA	Intergenic	Intergenic	59236	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
179019	chr4	164977121	164977800	+	0	NA	intron (NM_001012414, intron 1 of 4)	intron (NM_001012414, intron 1 of 4)	197	NM_001012414	391712		NM_001012414	ENSG00000183439	TRIM61	RNF35	tripartite motif containing 61	protein-coding
3745	chr1	16641901	16642330	+	0	NA	Intergenic	AluJo|SINE|Alu	-3459	NR_027504	11209		NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
200574	chr6	136288421	136289400	+	0	NA	intron (NM_001301038, intron 1 of 12)	intron (NM_001301038, intron 1 of 12)	936	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
163327	chr3	50372201	50373000	+	0	NA	intron (NM_006030, intron 22 of 37)	intron (NM_006030, intron 22 of 37)	7237	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
220485	chr8	100490271	100490700	+	0	NA	Intergenic	L1MC2|LINE|L1	69274	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
212276	chr7	123640651	123640750	+	0	NA	Intergenic	(GGAGGG)n|Simple_repeat|Simple_repeat	-15166	NM_207163	442721		NM_207163	ENSG00000170807	LMOD2	C-LMOD|CLMOD|CMD2G	leiomodin 2	protein-coding
95215	chr17	35249201	35249650	+	0	NA	intron (NM_144975, intron 1 of 4)	MER89-int|LTR|ERV1	6353	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
28840	chr10	62456651	62457030	+	0	NA	intron (NM_199450, intron 3 of 4)	(AC)n|Simple_repeat|Simple_repeat	-81713	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
163243	chr3	50275271	50275730	+	0	NA	intron (NM_001290061, intron 14 of 16)	CpG-19874	2264	NR_106932	102465526		NR_106932	ENSG00000283848	MIR6872	hsa-mir-6872	microRNA 6872	ncRNA
196948	chr6	52655701	52655900	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-8601	NR_024405	730101		NR_024403	ENSG00000291006	LOC730101	-	uncharacterized LOC730101	ncRNA
92573	chr17	9183371	9183600	+	0	NA	intron (NM_004822, intron 5 of 6)	Charlie4a|DNA|hAT-Charlie	-4367	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
238170	chrX	136865901	136866250	+	0	NA	Intergenic	AluSx1|SINE|Alu	13196	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
173729	chr4	15970171	15970330	+	0	NA	intron (NM_001371408, intron 24 of 24)	AluSx1|SINE|Alu	-7075	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
19684	chr1	181019151	181019880	+	0	NA	intron (NM_005819, intron 1 of 7)	intron (NM_005819, intron 1 of 7)	3355	NM_005819	10228		NM_005819	ENSG00000135823	STX6	-	syntaxin 6	protein-coding
20223	chr1	193164001	193164200	+	0	NA	intron (NM_024529, intron 10 of 16)	intron (NM_024529, intron 10 of 16)	22513	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
2495	chr1	9684971	9685130	+	0	NA	intron (NR_126368, intron 1 of 1)	intron (NR_126368, intron 1 of 1)	2524	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
225506	chr9	35688471	35688950	+	0	NA	intron (NM_213674, intron 2 of 8)	intron (NM_213674, intron 2 of 8)	1215	NM_003289	7169		NM_003289	ENSG00000198467	TPM2	AMCD1|CMYP23|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB	tropomyosin 2	protein-coding
138676	chr2	213022071	213022950	+	0	NA	intron (NM_001371277, intron 5 of 6)	intron (NM_001371277, intron 5 of 6)	-96174	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
146176	chr20	48747801	48748400	+	0	NA	intron (NM_020820, intron 1 of 39)	L2b|LINE|L2	79899	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
46552	chr11	128482271	128483190	+	0	NA	intron (NM_001162422, intron 1 of 3)	intron (NM_001162422, intron 1 of 3)	39580	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
134158	chr2	134236001	134236400	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-17872	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
220618	chr8	100928901	100929450	+	0	NA	intron (NM_001135702, intron 2 of 5)	L1MA4|LINE|L1	21396	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
43733	chr11	86060251	86060630	+	0	NA	intron (NM_001206947, intron 1 of 18)	Charlie1b|DNA|hAT-Charlie	8644	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
109555	chr19	882001	882600	+	0	NA	intron (NM_005481, intron 6 of 15)	AluJr|SINE|Alu	10887	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
223292	chr8	143763901	143764300	+	0	NA	intron (NM_001381874, intron 3 of 13)	intron (NM_001381874, intron 3 of 13)	-3592	NR_136279	105375800		NR_136279		LOC105375800	-	SREBF pathway regulator in golgi 1 pseudogene	pseudo
87468	chr16	71563901	71564100	+	0	NA	Intergenic	MER67A|LTR|ERV1	-1016	NR_103852	100132529		NR_103851	ENSG00000260886	TAT-AS1	-	TAT antisense RNA 1	ncRNA
6151	chr1	27396871	27397030	+	0	NA	Intergenic	AluSx1|SINE|Alu	4328	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
57028	chr12	120685201	120685700	+	0	NA	Intergenic	AluSc|SINE|Alu	-1699	NM_014730	9761		NM_014730	ENSG00000110917	MLEC	KIAA0152	malectin	protein-coding
46044	chr11	122694221	122694750	+	0	NA	intron (NM_032873, intron 1 of 13)	FAM|SINE|Alu	38763	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
87100	chr16	68528521	68529050	+	0	NA	Intergenic	Intergenic	-10428	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
139854	chr2	230525701	230525900	+	0	NA	intron (NM_001080391, intron 24 of 28)	L1PA6|LINE|L1	109044	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
199105	chr6	111678221	111678480	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	-72076	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
201776	chr6	149960621	149960900	+	0	NA	Intergenic	Intergenic	-3183	NM_001317089	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
36026	chr11	2918251	2918750	+	0	NA	intron (NM_183233, intron 7 of 10)	intron (NM_183233, intron 7 of 10)	10920	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
188553	chr5	156933301	156933700	+	0	NA	intron (NM_001146726, intron 4 of 7)	A-rich|Low_complexity|Low_complexity	29726	NM_001146726	91937		NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T cell immunoglobulin and mucin domain containing 4	protein-coding
86431	chr16	66883201	66883400	+	0	NA	intron (NM_001329932, intron 2 of 2)	AluYk2|SINE|Alu	2785	NM_020786	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
21173	chr1	203769321	203770200	+	0	NA	intron (NM_001282878, intron 1 of 4)	intron (NM_001282878, intron 1 of 4)	122	NM_001282878	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
104840	chr17	81835051	81835350	+	0	NA	promoter-TSS (NM_001007533)	promoter-TSS (NM_001007533)	-150	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
41640	chr11	66481401	66481600	+	0	NA	intron (NM_001256670, intron 1 of 16)	intron (NM_001256670, intron 1 of 16)	1066	NM_130443	10072		NM_005700	ENSG00000254986	DPP3	DPPIII	dipeptidyl peptidase 3	protein-coding
77013	chr15	78509701	78509930	+	0	NA	intron (NM_001083612, intron 1 of 4)	intron (NM_001083612, intron 1 of 4)	2238	NM_001013619	123688		NM_001013619	ENSG00000188266	HYKK	AGPHD1	hydroxylysine kinase	protein-coding
67217	chr14	68943601	68943800	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	35602	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
2005	chr1	6745151	6745680	+	0	NA	Intergenic	L1MB3|LINE|L1	17888	NR_104621	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
104375	chr17	81022271	81022950	+	0	NA	Intergenic	L1MB5|LINE|L1	12109	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
58499	chr12	132167651	132168180	+	0	NA	Intergenic	Intergenic	21780	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
230875	chr9	129180821	129181830	+	0	NA	Intergenic	Intergenic	-3064	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
230340	chr9	128009721	128010350	+	0	NA	Intergenic	AluSx3|SINE|Alu	-29046	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
140555	chr2	233270371	233271730	+	0	NA	intron (NM_001190266, intron 6 of 17).2	intron (NM_001190266, intron 6 of 17).2	-4676	NR_003008	677775		NR_003008	ENSG00000252010	SCARNA5	U87	small Cajal body-specific RNA 5	ncRNA
5947	chr1	26888221	26888550	+	0	NA	intron (NM_018066, intron 2 of 4)	MLT1A0|LTR|ERVL-MaLR	1898	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
72210	chr15	30175071	30175900	+	0	NA	Intergenic	Intergenic	-20551	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
166835	chr3	122942671	122943350	+	0	NA	intron (NM_001031702, intron 4 of 22)	intron (NM_001031702, intron 4 of 22)	33124	NM_001256347	54437		NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
5379	chr1	25434371	25434600	+	0	NA	intron (NM_001282564, intron 1 of 8)	L2c|LINE|L2	3588	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
32420	chr10	102476471	102477600	+	0	NA	TTS (NM_024789)	TTS (NM_024789)	15640	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
131592	chr2	96865321	96865800	+	0	NA	intron (NM_017789, intron 5 of 14)	intron (NM_017789, intron 5 of 14)	4520	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
99988	chr17	57697801	57698080	+	0	NA	Intergenic	Intergenic	47359	NM_001282544	101927581		NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
235477	chrX	46642151	46642450	+	0	NA	intron (NM_001257291, intron 12 of 16)	intron (NM_001257291, intron 12 of 16)	68535	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
176367	chr4	88527821	88528550	+	0	NA	intron (NM_001375482, intron 1 of 24)	intron (NM_001375482, intron 1 of 24)	4342	NM_001375483	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
196589	chr6	44218171	44218330	+	0	NA	TTS (NM_001347931)	TTS (NM_001347931)	1324	NM_001347931	101929726		NM_001315494	ENSG00000262179	MYMX	CFZS2|MINION|hMINION	myomixer, myoblast fusion factor	protein-coding
105479	chr17	83071771	83072450	+	0	NA	Intergenic	Intergenic	-7499	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
153115	chr22	23693651	23693950	+	0	NA	exon (NM_001329424, exon 4 of 12)	exon (NM_001329424, exon 4 of 12)	-2616	NM_001329425	266747		NM_153615	ENSG00000159496	RGL4	Rgr	ral guanine nucleotide dissociation stimulator like 4	protein-coding
113195	chr19	8433901	8434850	+	0	NA	intron (NR_163145, intron 3 of 3)	AluSx|SINE|Alu	-10600	NM_005968	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
80144	chr16	2087571	2088300	+	0	NA	TTS (NM_000296)	TTS (NM_000296)	2349	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
3276	chr1	15248271	15248430	+	0	NA	intron (NM_052929, intron 1 of 30)	LTR40a|LTR|ERVL	1125	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
83090	chr16	22441221	22441800	+	0	NA	intron (NR_027154, intron 1 of 28)	intron (NR_027154, intron 1 of 28)	-3795	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
170188	chr3	183789671	183790030	+	0	NA	intron (NM_001351371, intron 20 of 21)	L1MB7|LINE|L1	20601	NR_046727	100874113		NR_046727		YEATS2-AS1	-	YEATS2 antisense RNA 1	ncRNA
166769	chr3	122392571	122393230	+	0	NA	intron (NM_014367, intron 1 of 4)	intron (NM_014367, intron 1 of 4)	8718	NM_014367	26355		NM_014367	ENSG00000114023	FAM162A	C3orf28|E2IG5|HGTD-P	family with sequence similarity 162 member A	protein-coding
65036	chr14	39179601	39180030	+	0	NA	intron (NM_002687, intron 8 of 8)	AluSc8|SINE|Alu	4561	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
30952	chr10	87771751	87772230	+	0	NA	intron (NR_135914, intron 6 of 10)	intron (NR_135914, intron 6 of 10)	46241	NM_001321968	84896		NM_032810	ENSG00000138138	ATAD1	AFDC1|FNP001|HKPX4|Msp1|THORASE|hATAD1	ATPase family AAA domain containing 1	protein-coding
63630	chr14	20681021	20682000	+	0	NA	Intergenic	Intergenic	-2667	NM_001145	283		NM_001145	ENSG00000214274	ANG	ALS9|HEL168|RAA1|RNASE4|RNASE5	angiogenin	protein-coding
55944	chr12	109979021	109979480	+	0	NA	intron (NM_139201, intron 7 of 14)	L1MEf|LINE|L1	17118	NM_014776	9815		NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
102877	chr17	76513551	76513850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12273	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
196660	chr6	44338301	44339300	+	0	NA	Intergenic	Intergenic	-3850	NM_001372081	221409		NM_145026	ENSG00000249481	SPATS1	DDIP|SPATA8|SRSP1	spermatogenesis associated serine rich 1	protein-coding
232879	chr9	136833071	136833880	+	0	NA	intron (NM_024718, intron 7 of 14)	intron (NM_024718, intron 7 of 14)	2518	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
167414	chr3	129005321	129005980	+	0	NA	intron (NM_024768, intron 2 of 7)	L2b|LINE|L2	-1648	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
99239	chr17	49692851	49693200	+	0	NA	Intergenic	Intergenic	-14862	NM_001007226	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
85696	chr16	56518001	56518200	+	0	NA	intron (NR_165297, intron 1 of 16)	AluSx1|SINE|Alu	1924	NR_165297	583		NM_031885	ENSG00000125124	BBS2	BBS|RP74	Bardet-Biedl syndrome 2	protein-coding
60561	chr13	41494101	41494500	+	0	NA	Intergenic	Intergenic	36750	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
142559	chr20	5192001	5192680	+	0	NA	3' UTR (NM_003818, exon 13 of 13)	3' UTR (NM_003818, exon 13 of 13)	65332	NM_003818	8760		NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
53373	chr12	64674101	64675080	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSg4|SINE|Alu	-51985	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
82758	chr16	21423001	21423480	+	0	NA	intron (NM_130464, intron 2 of 12)	MLT1I|LTR|ERVL-MaLR	2138	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
53425	chr12	64825751	64825850	+	0	NA	intron (NM_015279, intron 1 of 11)	intron (NM_015279, intron 1 of 11)	1153	NM_001364838	23329		NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
79136	chr16	230821	231350	+	0	NA	Intergenic	Intergenic	-1603	NM_001330420	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
74827	chr15	63493751	63494050	+	0	NA	Intergenic	Intergenic	-10611	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
44526	chr11	107854851	107855150	+	0	NA	intron (NM_017515, intron 1 of 7)	intron (NM_017515, intron 1 of 7)	3787	NM_017515	54733		NM_017515	ENSG00000110660	SLC35F2	HSNOV1	solute carrier family 35 member F2	protein-coding
83065	chr16	22342651	22343150	+	0	NA	Intergenic	L1MA9|LINE|L1	31719	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
159876	chr3	16841301	16841500	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-43555	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
169683	chr3	172038871	172040100	+	0	NA	promoter-TSS (NM_022763)	promoter-TSS (NM_022763)	-93	NM_022763	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
158753	chr3	9373351	9373650	+	0	NA	intron (NM_001114092, intron 4 of 9)	MIR|SINE|MIR	10446	NM_001114092	25917		NM_015453	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
158904	chr3	9948751	9949050	+	0	NA	non-coding (NR_134900, exon 3 of 5)	non-coding (NR_134900, exon 3 of 5)	1496	NR_046734	100874032		NR_046734	ENSG00000230082	PRRT3-AS1	-	PRRT3 antisense RNA 1	ncRNA
124091	chr19	55639971	55640500	+	0	NA	promoter-TSS (NM_207115)	promoter-TSS (NM_207115)	-767	NM_207115	51157		NM_016202	ENSG00000213015	ZNF580	-	zinc finger protein 580	protein-coding
182930	chr5	70776501	70776900	+	0	NA	promoter-TSS (NR_160659).3	promoter-TSS (NR_160659).3	-64	NR_160659	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
222489	chr8	140454701	140455380	+	0	NA	intron (NM_031466, intron 1 of 22)	L1MB7|LINE|L1	2704	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
163570	chr3	51939001	51939400	+	0	NA	intron (NM_004704, intron 2 of 14)	intron (NM_004704, intron 2 of 14)	2704	NM_004704	9136		NM_004704	ENSG00000114767	RRP9	RNU3IP2|U3-55K	ribosomal RNA processing 9, U3 small nucleolar RNA binding protein	protein-coding
144702	chr20	36472271	36473230	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	10955	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
15241	chr1	149604771	149605230	+	0	NA	Intergenic	MER31-int|LTR|ERV1	-2012	NR_111950	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
34544	chr10	132988671	132989100	+	0	NA	Intergenic	Intergenic	23351	NR_046231	399829		NR_046231	ENSG00000240707	LINC01168	-	long intergenic non-protein coding RNA 1168	ncRNA
11249	chr1	88989651	88990680	+	0	NA	intron (NM_001349450, intron 1 of 14)	L2|LINE|L2	2464	NM_001162536	494115		NM_019610	ENSG00000213516	RBMXL1	RBM1	RBMX like 1	protein-coding
223127	chr8	143477571	143478130	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	28398	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
115850	chr19	16535051	16535680	+	0	NA	intron (NM_006387, intron 3 of 16)	intron (NM_006387, intron 3 of 16)	7072	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
61743	chr13	74194551	74194850	+	0	NA	Intergenic	Intergenic	-36744	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
179313	chr4	177502371	177502530	+	0	NA	Intergenic	L1PBa1|LINE|L1	-59947	NM_001171988	175		NM_000027	ENSG00000038002	AGA	AGU|ASRG|GA	aspartylglucosaminidase	protein-coding
169784	chr3	172749221	172749480	+	0	NA	Intergenic	Intergenic	-1335	NM_001258316	1894		NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
198742	chr6	108559201	108560200	+	0	NA	promoter-TSS (NM_201559)	promoter-TSS (NM_201559)	-125	NM_201559	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
88167	chr16	81706251	81706750	+	0	NA	intron (NM_030629, intron 19 of 20)	intron (NM_030629, intron 19 of 20)	41146	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
158654	chr3	5015971	5016950	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-36499	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
34052	chr10	124742101	124742630	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	2013	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
10466	chr1	66333451	66333850	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	1542	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
225887	chr9	39677201	39677400	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	132859	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
185649	chr5	131545471	131545630	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	89679	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
68940	chr14	91390001	91391530	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	27055	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
175494	chr4	73251351	73252130	+	0	NA	intron (NM_032217, intron 1 of 33)	intron (NM_032217, intron 1 of 33)	7058	NM_015574	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
6485	chr1	28368001	28368630	+	0	NA	Intergenic	AluJb|SINE|Alu	-1425	NM_001350161	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
9692	chr1	53014771	53015400	+	0	NA	intron (NM_001007100, intron 1 of 4)	intron (NM_001007100, intron 1 of 4)	147	NM_001007250	6342		NM_002979	ENSG00000116171	SCP2	NLTP|NSL-TP|SCOX|SCP-2|SCP-CHI|SCP-X|SCPX	sterol carrier protein 2	protein-coding
199564	chr6	118892051	118892650	+	0	NA	TTS (NM_001378365)	TTS (NM_001378365)	-1802	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
60292	chr13	40631501	40632550	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSc8|SINE|Alu	34616	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
213945	chr7	142700321	142701000	+	0	NA	intron (NM_001130026, intron 10 of 10)	THE1D|LTR|ERVL-MaLR	34361	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
36396	chr11	4064871	4065580	+	0	NA	intron (NR_168438, intron 5 of 9)	intron (NR_168438, intron 5 of 9)	-29460	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
176955	chr4	103091571	103092030	+	0	NA	intron (NM_020139, intron 4 of 9)	intron (NM_020139, intron 4 of 9)	8034	NM_020139	56898		NM_020139	ENSG00000164039	BDH2	DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308	3-hydroxybutyrate dehydrogenase 2	protein-coding
120142	chr19	42214871	42215980	+	0	NA	intron (NR_073047, intron 1 of 3)	L3|LINE|CR1	2252	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
227691	chr9	93012001	93012200	+	0	NA	intron (NM_001369952, intron 8 of 16)	AluY|SINE|Alu	2844	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
62184	chr13	97460121	97460380	+	0	NA	intron (NM_021033, intron 1 of 1)	MamRTE1|LINE|RTE-BovB	26081	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
71300	chr14	105304921	105306080	+	0	NA	intron (NM_001243127, intron 1 of 23)	MLT1A0|LTR|ERVL-MaLR	-4499	NM_001519	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
116653	chr19	18339751	18340800	+	0	NA	promoter-TSS (NM_001308366)	promoter-TSS (NM_001308366)	-323	NM_001329477	54858		NM_017712	ENSG00000130517	PGPEP1	PAP-I|PGI|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
4496	chr1	21657651	21658250	+	0	NA	intron (NM_002885, intron 1 of 24)	intron (NM_002885, intron 1 of 24)	-6052	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
88369	chr16	84592551	84592850	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	25378	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
26562	chr10	21675201	21675480	+	0	NA	intron (NR_136736, intron 12 of 25)	MER20|DNA|hAT-Charlie	141108	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
191481	chr6	11202901	11203500	+	0	NA	intron (NM_182966, intron 2 of 2)	intron (NM_182966, intron 2 of 2)	29468	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
133465	chr2	119772651	119773100	+	0	NA	intron (NM_002830, intron 1 of 26)	MER46C|DNA|TcMar-Tigger	12953	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
176605	chr4	99029171	99029430	+	0	NA	intron (NM_015143, intron 2 of 10)	intron (NM_015143, intron 2 of 10)	31913	NR_037455	100500867		NR_037455	ENSG00000265213	MIR3684	-	microRNA 3684	ncRNA
217994	chr8	38388151	38389380	+	0	NA	intron (NM_144652, intron 2 of 9)	AluSx|SINE|Alu	1634	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
21008	chr1	202836871	202837280	+	0	NA	Intergenic	MIRc|SINE|MIR	16818	NR_038135	641515		NR_038135	ENSG00000293466	MGAT4EP	-	MGAT4 family member E, pseudogene	pseudo
98674	chr17	47849951	47850200	+	0	NA	intron (NM_199262, intron 1 of 1)	intron (NM_199262, intron 1 of 1)	1088	NM_001258248	80320		NM_199262	ENSG00000189120	SP6	AI1K|EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
120099	chr19	42133001	42134080	+	0	NA	promoter-TSS (NR_036208)	promoter-TSS (NR_036208)	-27	NR_036208	100422980		NR_036208	ENSG00000266226	MIR4323	-	microRNA 4323	ncRNA
20706	chr1	200671471	200671830	+	0	NA	intron (NR_110787, intron 1 of 2)	L1ME3F|LINE|L1	-1652	NM_001349803	83479		NM_031306	ENSG00000118197	DDX59	OFD5|ZNHIT5	DEAD-box helicase 59	protein-coding
40689	chr11	64771501	64772000	+	0	NA	intron (NM_001346410, intron 2 of 11)	intron (NM_001346410, intron 2 of 11)	6011	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
30617	chr10	80204771	80207900	+	0	NA	promoter-TSS (NM_001157)	promoter-TSS (NM_001157)	-527	NM_001278407	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
198411	chr6	105989851	105990500	+	0	NA	Intergenic	L2a|LINE|L2	-96161	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
116903	chr19	18777751	18778050	+	0	NA	3' UTR (NM_001098482, exon 15 of 15)	3' UTR (NM_001098482, exon 15 of 15)	13405	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
201749	chr6	149929251	149929630	+	0	NA	Intergenic	Intergenic	-5073	NR_134598	105378052		NR_134598	ENSG00000293239	LOC105378052	-	uncharacterized LOC105378052	ncRNA
131747	chr2	98454101	98455000	+	0	NA	intron (NM_001351429, intron 1 of 23)	MIRb|SINE|MIR	8540	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
90348	chr17	1196301	1196750	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	-9253	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
98715	chr17	47977601	47977800	+	0	NA	intron (NM_176096, intron 9 of 13)	intron (NM_176096, intron 9 of 13)	6587	NM_001278198	80279		NM_025197	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding
161590	chr3	43023671	43024900	+	0	NA	intron (NM_001129908, intron 1 of 4)	MER74A|LTR|ERVL	44974	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
169266	chr3	157239121	157239450	+	0	NA	Intergenic	Intergenic	-79138	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
225381	chr9	34994551	34994650	+	0	NA	intron (NM_001349725, intron 3 of 4)	intron (NM_001349725, intron 3 of 4)	4310	NM_001135005	25822		NM_012266	ENSG00000137094	DNAJB5	Hsc40	DnaJ heat shock protein family (Hsp40) member B5	protein-coding
26291	chr10	14951371	14952050	+	0	NA	intron (NR_146960, intron 1 of 13)	MLT1A|LTR|ERVL-MaLR	2386	NR_146961	64421		NM_022487	ENSG00000152457	DCLRE1C	A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C	DNA cross-link repair 1C	protein-coding
146092	chr20	47608721	47608980	+	0	NA	intron (NM_181659, intron 2 of 22)	intron (NM_181659, intron 2 of 22)	106963	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
175006	chr4	51885471	51885630	+	0	NA	intron (NM_015115, intron 5 of 9)	L2|LINE|L2	41971	NM_001287755	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
116754	chr19	18482201	18482680	+	0	NA	intron (NM_006532, intron 1 of 11)	(CTGCCT)n|Simple_repeat|Simple_repeat	39630	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
126701	chr2	30158551	30159830	+	0	NA	3' UTR (NM_001127399, exon 4 of 4)	3' UTR (NM_001127399, exon 4 of 4)	12183	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
15958	chr1	151846101	151846350	+	0	NA	TTS (NM_182578)	TTS (NM_182578)	-5668	NM_001136003	100191040		NM_001136003	ENSG00000225556	C2CD4D	FAM148D	C2 calcium dependent domain containing 4D	protein-coding
176861	chr4	102612671	102613470	+	0	NA	intron (NM_001382625, intron 23 of 24)	intron (NM_001382625, intron 23 of 24)	-110584	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
229519	chr9	122595551	122595650	+	0	NA	Intergenic	L1PA3|LINE|L1	-19138	NM_012364	158131		NM_012364	ENSG00000165202	OR1Q1	HSTPCR106|OR1Q2|OR1Q3|OR9-25|OR9-A|OST226|OST226OR9-A|TPCR106	olfactory receptor family 1 subfamily Q member 1	protein-coding
4006	chr1	18924551	18925250	+	0	NA	intron (NM_001136265, intron 1 of 8)	MIRb|SINE|MIR	-22101	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
198597	chr6	107712471	107713830	+	0	NA	intron (NM_001286409, intron 2 of 3)	intron (NM_001286409, intron 2 of 3)	19000	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
56919	chr12	120432421	120432880	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5463	NM_004373	1337		NM_004373	ENSG00000111775	COX6A1	CMTRID|COX6A|COX6AL	cytochrome c oxidase subunit 6A1	protein-coding
96566	chr17	40448871	40449030	+	0	NA	intron (NM_001552, intron 1 of 3)	intron (NM_001552, intron 1 of 3)	5500	NM_001552	3487		NM_001552	ENSG00000141753	IGFBP4	BP-4|HT29-IGFBP|IBP4|IGFBP-4	insulin like growth factor binding protein 4	protein-coding
117144	chr19	19315121	19315880	+	0	NA	intron (NM_172231, intron 2 of 13)	intron (NM_172231, intron 2 of 13)	5009	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
160943	chr3	36905201	36905400	+	0	NA	intron (NM_014831, intron 1 of 22)	AluY|SINE|Alu	39754	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
195863	chr6	41534451	41534800	+	0	NA	intron (NR_126415, intron 1 of 1)	intron (NR_126415, intron 1 of 1)	11618	NR_126417	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
138649	chr2	211745451	211745550	+	0	NA	intron (NM_005235, intron 5 of 27)	intron (NM_005235, intron 5 of 27)	680860	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
90702	chr17	1765751	1766280	+	0	NA	intron (NM_001329903, intron 1 of 7)	intron (NM_001329903, intron 1 of 7)	3211	NM_001329903	5176		NM_002615	ENSG00000132386	SERPINF1	EPC-1|OI12|OI6|PEDF|PIG35	serpin family F member 1	protein-coding
13216	chr1	112656801	112657400	+	0	NA	intron (NM_006135, intron 5 of 9)	AluSg|SINE|Alu	-17212	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
146149	chr20	48690901	48691100	+	0	NA	exon (NM_020820, exon 9 of 40)	exon (NM_020820, exon 9 of 40)	136999	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
208647	chr7	73007301	73007630	+	0	NA	intron (NR_130940, intron 1 of 5)	L2c|LINE|L2	1385	NR_130940	100101440		NR_130940		PMS2P7	PMS2L15|PMS2LP2|PMSR7	PMS1 homolog 2, mismatch repair system component pseudogene 7	pseudo
49035	chr12	14376921	14377380	+	0	NA	intron (NM_001286515, intron 1 of 12)	AluSz|SINE|Alu	-8131	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
203768	chr7	1223301	1223600	+	0	NA	Intergenic	Intergenic	-9422	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
95333	chr17	35746521	35746780	+	0	NA	intron (NM_139285, intron 5 of 5)	intron (NM_139285, intron 5 of 5)	6589	NM_139285	246176		NM_139285	ENSG00000270765	GAS2L2	CILD41|GAR17	growth arrest specific 2 like 2	protein-coding
147759	chr20	62475371	62475730	+	0	NA	intron (NM_080473, intron 1 of 6)	CpG-17995	445	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
102371	chr17	75526751	75527250	+	0	NA	intron (NM_004524, intron 1 of 24)	AluJo|SINE|Alu	1298	NM_001015002	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
133572	chr2	121530021	121531850	+	0	NA	promoter-TSS (NR_023343)	promoter-TSS (NR_023343)	55	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
128372	chr2	55014751	55015180	+	0	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	-4693	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
82278	chr16	15372601	15372800	+	0	NA	intron (NM_001351200, intron 2 of 8)	intron (NM_001351200, intron 2 of 8)	5594	NM_001277325	100288332		NM_001277325	ENSG00000183793	NPIPA5	NPIP	nuclear pore complex interacting protein family member A5	protein-coding
212249	chr7	121398371	121398530	+	0	NA	Intergenic	Intergenic	-2082	NM_001040020	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
57398	chr12	121824651	121824850	+	0	NA	intron (NM_001353345, intron 12 of 16)	MIRb|SINE|MIR	20741	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
111175	chr19	3362851	3363250	+	0	NA	intron (NM_205843, intron 1 of 10)	intron (NM_205843, intron 1 of 10)	3420	NM_205843	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
114456	chr19	12720101	12720300	+	0	NA	intron (NM_001382240, intron 3 of 25)	AluSx1|SINE|Alu	2059	NM_001382242	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
206512	chr7	33895251	33895650	+	0	NA	Intergenic	Intergenic	-9465	NM_133468	168667		NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
220992	chr8	115565001	115565200	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	102913	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
218771	chr8	58973451	58974500	+	0	NA	intron (NM_014729, intron 1 of 8)	AluSx|SINE|Alu	145172	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
37692	chr11	28104421	28104680	+	0	NA	intron (NM_031217, intron 1 of 16)	L2a|LINE|L2	3606	NM_031217	81930		NM_031217	ENSG00000121621	KIF18A	MS-KIF18A|PPP1R99	kinesin family member 18A	protein-coding
149526	chr21	32938151	32938250	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-20688	NR_135522	102724502		NR_135522	ENSG00000228961	LINC01690	-	long intergenic non-protein coding RNA 1690	ncRNA
101724	chr17	68614051	68614150	+	0	NA	Intergenic	LTR41C|LTR|ERVL	-12733	NM_001243746	54757		NM_017565	ENSG00000108950	FAM20A	AI1G|AIGFS|FP2747	FAM20A golgi associated secretory pathway pseudokinase	protein-coding
185676	chr5	131655771	131656130	+	0	NA	intron (NM_133372, intron 15 of 17)	intron (NM_133372, intron 15 of 17)	-20721	NM_016340	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
23540	chr1	229227071	229227900	+	0	NA	Intergenic	Intergenic	-43577	NR_073545	5867		NM_004578	ENSG00000168118	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
238723	chrX	154188971	154189150	+	0	NA	intron (NM_000513, intron 2 of 5)	intron (NM_000513, intron 2 of 5)	6442	NM_001330067	101060233		NM_001330067	ENSG00000269433	OPN1MW3	GCP|GOP|OPN1MW|OPN1MW2	opsin 1, medium wave sensitive 3	protein-coding
102658	chr17	76075151	76075980	+	0	NA	intron (NM_003857, intron 1 of 1)	CpG	784	NM_003857	8811		NM_003857	ENSG00000182687	GALR2	GAL2-R|GALNR2|GALR-2	galanin receptor 2	protein-coding
125211	chr2	10306951	10307400	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	3475	NM_134421	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
8783	chr1	42845871	42847700	+	0	NA	intron (NM_015911, intron 1 of 1)	CpG	172	NM_001242739	51058		NM_015911	ENSG00000164011	ZNF691	Zfp691	zinc finger protein 691	protein-coding
57156	chr12	121295751	121298080	+	0	NA	promoter-TSS (NM_001270485)	promoter-TSS (NM_001270485)	-162	NM_172226	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
212027	chr7	114930801	114931480	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	8986	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
210245	chr7	99386721	99387400	+	0	NA	intron (NM_005720, intron 3 of 9)	MLT1K|LTR|ERVL-MaLR	12330	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
189428	chr5	172854021	172854930	+	0	NA	intron (NM_001031711, intron 1 of 9)	MER6A|DNA|TcMar-Tigger	20224	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
203796	chr7	1251871	1252230	+	0	NA	Intergenic	Intergenic	19178	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
10280	chr1	64829621	64829880	+	0	NA	intron (NM_001366165, intron 11 of 11)	intron (NM_001366165, intron 11 of 11)	84675	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
102908	chr17	76560571	76562000	+	0	NA	promoter-TSS (NR_004395)	promoter-TSS (NR_004395)	177	NR_004396	677849		NR_004396	ENSG00000199961	SNORD1B	R38B|snR38B	small nucleolar RNA, C/D box 1B	snoRNA
140632	chr2	233464421	233464880	+	0	NA	intron (NM_001377259, intron 25 of 27)	intron (NM_001377259, intron 25 of 27)	25248	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
216302	chr8	12607001	12608280	+	0	NA	intron (NR_047662, intron 3 of 8)	CpG-27012	57971	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
18978	chr1	169104771	169105000	+	0	NA	TTS (NR_135799)	TTS (NR_135799)	761	NR_135799	101928596		NR_135799	ENSG00000237707	LOC101928596	-	uncharacterized LOC101928596	ncRNA
238624	chrX	153953151	153955030	+	0	NA	exon (NM_005334, exon 17 of 26)	exon (NM_005334, exon 17 of 26)	-9447	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
159849	chr3	16515701	16516290	+	0	NA	Intergenic	Intergenic	-2296	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
237432	chrX	119672001	119672400	+	0	NA	intron (NM_145799, intron 2 of 10)	intron (NM_145799, intron 2 of 10)	20968	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
221272	chr8	122798051	122798150	+	0	NA	intron (NM_014943, intron 1 of 3)	MIRc|SINE|MIR	16445	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
95654	chr17	38094001	38094500	+	0	NA	intron (NR_164156, intron 1 of 5).2	MER21A|LTR|ERVL	15988	NR_164156	101929950		NR_164156		LOC101929950	-	puromycin-sensitive aminopeptidase-like protein	pseudo
115782	chr19	16360901	16361100	+	0	NA	TTS (NM_001258375)	TTS (NM_001258375)	36174	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
147931	chr20	62922351	62923450	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	3605	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
41011	chr11	65426001	65426900	+	0	NA	TTS (NR_028272)	TTS (NR_028272)	3652	NR_131012	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
35087	chr11	624871	626130	+	0	NA	promoter-TSS (NM_021924).2	promoter-TSS (NM_021924).2	-545	NM_031264	53841		NM_017717	ENSG00000099834	CDHR5	MLPCDH|MU-PCDH|MUCDHL|MUPCDH	cadherin related family member 5	protein-coding
101623	chr17	68207751	68207850	+	0	NA	intron (NM_001346471, intron 1 of 6)	LTR12C|LTR|ERV1	1671	NM_001346472	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
45019	chr11	117017251	117017650	+	0	NA	intron (NM_001281748, intron 1 of 24)	L1ME3B|LINE|L1	80978	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
179160	chr4	169761071	169761230	+	0	NA	Intergenic	HAL1|LINE|L1	-3206	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
79909	chr16	1677421	1678950	+	0	NA	promoter-TSS (NM_144570)	promoter-TSS (NM_144570)	-94	NM_144570	90861		NM_144570	ENSG00000206053	JPT2	C16orf34|HN1L|L11	Jupiter microtubule associated homolog 2	protein-coding
39176	chr11	57422951	57423250	+	0	NA	intron (NM_199329, intron 5 of 13)	MIR3|SINE|MIR	4021	NM_001278201	29015		NM_014096	ENSG00000134802	SLC43A3	EEG1|ENBT1|FOAP-13|PRO1659|SEEEG-1	solute carrier family 43 member 3	protein-coding
36158	chr11	3146451	3146750	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	18710	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
112224	chr19	5707551	5707950	+	0	NA	exon (NM_004793, exon 6 of 18)	exon (NM_004793, exon 6 of 18)	12396	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
126639	chr2	28824201	28824550	+	0	NA	intron (NM_001142634, intron 4 of 6)	AluJr|SINE|Alu	8378	NM_001008779	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
100526	chr17	62476721	62477180	+	0	NA	promoter-TSS (NM_001375271)	promoter-TSS (NM_001375271)	-861	NM_001375271	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
135553	chr2	164988801	164989000	+	0	NA	Intergenic	LTR84b|LTR|ERVL	-33375	NM_173512	151258		NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
163821	chr3	52444571	52445650	+	0	NA	promoter-TSS (NM_020163)	promoter-TSS (NM_020163)	-7	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
83320	chr16	24728701	24731180	+	0	NA	intron (NM_001330520, intron 1 of 23)	CpG	289	NM_014494	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
232846	chr9	136769601	136770480	+	0	NA	Intergenic	Intergenic	-5522	NM_203347	389812		NM_203347	ENSG00000177984	LCN15	PRO6093|UNQ2541	lipocalin 15	protein-coding
165181	chr3	72439601	72440780	+	0	NA	intron (NM_012234, intron 1 of 3)	L1ME3A|LINE|L1	6433	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
136328	chr2	175164521	175165130	+	0	NA	intron (NR_045772, intron 1 of 14)	intron (NR_045772, intron 1 of 14)	2884	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
50587	chr12	48454701	48454980	+	0	NA	Intergenic	Intergenic	-17719	NM_012404	23519		NM_012404	ENSG00000139223	ANP32D	PP32R2	acidic nuclear phosphoprotein 32 family member D	protein-coding
8616	chr1	41663821	41664850	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-179652	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
17522	chr1	156770221	156770580	+	0	NA	intron (NM_005973, intron 1 of 6)	AluSp|SINE|Alu	2865	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
122095	chr19	48748801	48749000	+	0	NA	3' UTR (NM_000148, exon 4 of 4)	3' UTR (NM_000148, exon 4 of 4)	-1991	NM_182575	284359		NM_182575	ENSG00000182264	IZUMO1	IZUMO|OBF	izumo sperm-oocyte fusion 1	protein-coding
98927	chr17	48618611	48619680	+	0	NA	Intergenic	Intergenic	-3853	NM_024016	3218		NM_024016	ENSG00000120068	HOXB8	HOX2|HOX2D|Hox-2.4	homeobox B8	protein-coding
120393	chr19	43700101	43700300	+	0	NA	Intergenic	Intergenic	-15876	NM_019612	56269		NM_019612	ENSG00000124449	IRGC	CINEMA|IFGGE|IRGC1|Iigp5|R30953_1	immunity related GTPase cinema	protein-coding
169298	chr3	158640501	158640950	+	0	NA	Intergenic	Charlie3|DNA|hAT-Charlie	-3802	NR_164499	85476		NM_024996	ENSG00000168827	GFM1	COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1|mtEF-G1	G elongation factor mitochondrial 1	protein-coding
157930	chr22	49784251	49784630	+	0	NA	intron (NR_146335, intron 9 of 13)	CpG	39891	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
109632	chr19	991321	992580	+	0	NA	intron (NM_001372085, intron 9 of 11)	intron (NM_001372085, intron 9 of 11)	7605	NM_024100	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
18741	chr1	167481021	167481530	+	0	NA	intron (NM_198053, intron 1 of 7)	AluJb|SINE|Alu	37254	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
217129	chr8	25322651	25323150	+	0	NA	intron (NM_024940, intron 16 of 51)	intron (NM_024940, intron 16 of 51)	-22502	NR_106936	102465527		NR_106936	ENSG00000274988	MIR6876	hsa-mir-6876	microRNA 6876	ncRNA
89763	chr16	89457821	89458550	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	27267	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
228973	chr9	113522801	113523850	+	0	NA	intron (NM_144488, intron 18 of 25)	MIRb|SINE|MIR	-13286	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
36851	chr11	10309301	10310000	+	0	NA	intron (NR_103765, intron 1 of 3)	intron (NR_103765, intron 1 of 3)	1337	NR_103765	100130460		NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
186075	chr5	134094651	134094750	+	0	NA	Intergenic	AluY|SINE|Alu	-19981	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
105446	chr17	82971701	82972280	+	0	NA	intron (NR_135465, intron 6 of 13)	intron (NR_135465, intron 6 of 13)	34998	NR_135466	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
9393	chr1	47433351	47433450	+	0	NA	non-coding (NR_026878, exon 1 of 1)	non-coding (NR_026878, exon 1 of 1)	1241	NR_026878	84793		NM_032707	ENSG00000237424	FOXD2-AS1	-	FOXD2 adjacent opposite strand RNA 1	ncRNA
81786	chr16	11529521	11529780	+	0	NA	Intergenic	ORSL-2a|DNA|hAT-Tip100	-2403	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
80088	chr16	2002821	2003230	+	0	NA	exon (NM_178167, exon 5 of 14)	exon (NM_178167, exon 5 of 14)	6796	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
215710	chr8	1482101	1482300	+	0	NA	intron (NM_001346810, intron 3 of 14)	intron (NM_001346810, intron 3 of 14)	139464	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
133192	chr2	113009751	113009850	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	4341	NM_014440	27179		NM_014440	ENSG00000136694	IL36A	FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6	interleukin 36 alpha	protein-coding
170996	chr3	194673671	194673830	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-1559	NM_018385	55341		NM_018385	ENSG00000041802	LSG1	-	large 60S subunit nuclear export GTPase 1	protein-coding
43175	chr11	75388251	75389650	+	0	NA	Intergenic	Intergenic	-10541	NM_001260507	6188		NM_001005	ENSG00000149273	RPS3	S3|uS3	ribosomal protein S3	protein-coding
151515	chr21	46428471	46429150	+	0	NA	intron (NM_006031, intron 35 of 46)	intron (NM_006031, intron 35 of 46)	-30081	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
111595	chr19	4091971	4092630	+	0	NA	intron (NM_030662, intron 10 of 10)	intron (NM_030662, intron 10 of 10)	-25401	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
225002	chr9	33120901	33121500	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	12508	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
49708	chr12	31118901	31120500	+	0	NA	intron (NR_153414, intron 38 of 44)	L1MDa|LINE|L1	45840	NM_001257145	1663		NM_004399	ENSG00000013573	DDX11	CHL1|CHLR1|KRG2|WABS	DEAD/H-box helicase 11	protein-coding
223738	chr8	144503001	144503430	+	0	NA	promoter-TSS (NM_005309)	promoter-TSS (NM_005309)	147	NM_001382664	2875		NM_005309	ENSG00000167701	GPT	AAT1|ALT|ALT1|GPT1|SGPT	glutamic--pyruvic transaminase	protein-coding
133049	chr2	112186601	112186800	+	0	NA	intron (NM_153214, intron 7 of 7)	intron (NM_153214, intron 7 of 7)	48315	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
128270	chr2	54581971	54582800	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	23991	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
158585	chr3	4736371	4736880	+	0	NA	intron (NM_002222, intron 40 of 57)	intron (NM_002222, intron 40 of 57)	14965	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
61024	chr13	48158101	48158800	+	0	NA	Intergenic	Intergenic	-63309	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
203047	chr6	165884801	165885400	+	0	NA	Intergenic	Intergenic	-102451	NR_027284	441177		NM_001013720	ENSG00000281832	LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
198177	chr6	96222651	96222750	+	0	NA	Intergenic	AluY|SINE|Alu	206726	NM_006581	10690		NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding
224258	chr9	5989171	5989750	+	0	NA	intron (NM_001017969, intron 1 of 7)	intron (NM_001017969, intron 1 of 7)	-18366	NR_039811	100616288		NR_039811	ENSG00000263575	MIR4665	mir-4665	microRNA 4665	ncRNA
77242	chr15	81299701	81300450	+	0	NA	exon (NM_004513, exon 2 of 7)	exon (NM_004513, exon 2 of 7)	3105	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
56957	chr12	120525621	120525880	+	0	NA	intron (NM_032314, intron 1 of 6)	AluY|SINE|Alu	3408	NM_032314	84274		NM_032314	ENSG00000110871	COQ5	COQ10D9	coenzyme Q5, methyltransferase	protein-coding
48077	chr12	7156401	7157000	+	0	NA	intron (NM_014718, intron 16 of 17)	intron (NM_014718, intron 16 of 17)	26329	NM_014718	9746		NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
88809	chr16	87400701	87402100	+	0	NA	intron (NM_022818, intron 2 of 3)	intron (NM_022818, intron 2 of 3)	9064	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
221527	chr8	124659921	124660780	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	68123	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
84988	chr16	31461871	31463080	+	0	NA	exon (NM_001301820, exon 4 of 7)	exon (NM_001301820, exon 4 of 7)	2974	NM_001105247	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
190347	chr5	179677871	179679780	+	0	NA	exon (NM_001164444, exon 2 of 2)	exon (NM_001164444, exon 2 of 2)	2209	NM_001164444	646019		NM_001164444	ENSG00000204659	CBY3	-	chibby family member 3	protein-coding
215567	chr7	158817151	158817550	+	0	NA	intron (NM_020728, intron 1 of 21)	MER4B|LTR|ERV1	12159	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
56435	chr12	113425371	113425680	+	0	NA	intron (NM_001304993, intron 1 of 7)	intron (NM_001304993, intron 1 of 7)	3135	NM_138432	113675		NM_138432	ENSG00000139410	SDSL	SDH 2|SDHL|SDS-RS1|TDH|cSDH	serine dehydratase like	protein-coding
30659	chr10	80481851	80483080	+	0	NA	intron (NM_001351272, intron 2 of 9)	AluSx1|SINE|Alu	14224	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
32091	chr10	101138151	101138450	+	0	NA	TTS (NM_001195517)	TTS (NM_001195517)	2966	NR_130724	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
103244	chr17	77509951	77510250	+	0	NA	Intergenic	Intergenic	-16901	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
190223	chr5	178238801	178240700	+	0	NA	intron (NM_173465, intron 27 of 28)	intron (NM_173465, intron 27 of 28)	-6928	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
125659	chr2	20051201	20052980	+	0	NA	promoter-TSS (NM_014713)	promoter-TSS (NM_014713)	-462	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
153440	chr22	25076171	25076850	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	36182	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
9864	chr1	54294351	54294650	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	58057	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
204921	chr7	6165701	6166150	+	0	NA	intron (NM_004227, intron 9 of 12)	CpG	6212	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
161170	chr3	39105901	39106100	+	0	NA	intron (NR_103866, intron 1 of 8)	L2a|LINE|L2	1627	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
148809	chr21	8250601	8252500	+	0	NA	promoter-TSS (NR_030386)	promoter-TSS (NR_030386)	-682	NR_030386	724033		NR_030386	ENSG00000284419	MIR663A	MIR663|MIRN663|hsa-mir-663|hsa-mir-663a|mir-663a	microRNA 663a	ncRNA
71860	chr15	22263801	22264580	+	0	NA	intron (NR_033735, intron 1 of 2)	Tigger3a|DNA|TcMar-Tigger	5576	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
167558	chr3	129388471	129388630	+	0	NA	intron (NR_003111, intron 3 of 3)	MIRb|SINE|MIR	8798	NR_002992	677797		NR_002992	ENSG00000207088	SNORA7B	ACA7B	small nucleolar RNA, H/ACA box 7B	snoRNA
136533	chr2	177266851	177267150	+	0	NA	Intergenic	Intergenic	-1869	NM_001313902	4780		NM_006164	ENSG00000116044	NFE2L2	HEBP1|IMDDHH|NRF2|Nrf-2	NFE2 like bZIP transcription factor 2	protein-coding
139730	chr2	229783871	229784030	+	0	NA	intron (NM_001348327, intron 34 of 41)	AluSp|SINE|Alu	-69395	NM_139072	92737		NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch like EGF repeat containing	protein-coding
66620	chr14	63729351	63729450	+	0	NA	Intergenic	AluSp|SINE|Alu	-1335	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
233942	chrX	2502901	2503730	+	0	NA	Intergenic	AluSx|SINE|Alu	-2339	NM_145177	207063		NM_145177	ENSG00000169084	DHRSX	CXorf11|DHRS5X|DHRS5Y|DHRSXY|DHRSY|SDR46C1|SDR7C6	dehydrogenase/reductase X-linked	protein-coding
84239	chr16	29995801	29997230	+	0	NA	promoter-TSS (NM_001197323)	promoter-TSS (NM_001197323)	274	NR_130787	283899		NM_173618	ENSG00000169592	INO80E	CCDC95	INO80 complex subunit E	protein-coding
21735	chr1	206799501	206799700	+	0	NA	intron (NM_153758, intron 2 of 6)	MLT1O|LTR|ERVL-MaLR	-27106	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
170640	chr3	187041271	187042680	+	0	NA	intron (NM_173217, intron 3 of 6)	intron (NM_173217, intron 3 of 6)	3257	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
143441	chr20	30290401	30291280	+	0	NA	Intergenic	Intergenic	-4303	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
27149	chr10	28332711	28333700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-30141	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
125909	chr2	24918971	24919500	+	0	NA	intron (NM_001377129, intron 1 of 21)	intron (NM_001377129, intron 1 of 21)	350	NM_001377132	109		NM_004036	ENSG00000138031	ADCY3	AC-III|AC3|BMIQ19	adenylate cyclase 3	protein-coding
49342	chr12	22101901	22102180	+	0	NA	Intergenic	L1PREC2|LINE|L1	55822	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
194849	chr6	34438851	34438950	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-12775	NM_001202470	100529239		NM_001202470	ENSG00000270800	RPS10-NUDT3	-	RPS10-NUDT3 readthrough	protein-coding
131068	chr2	88641221	88641480	+	0	NA	Intergenic	L1PREC2|LINE|L1	13521	NR_135540	101928403		NR_135540	ENSG00000234028	EIF2AK3-DT	-	EIF2AK3 divergent transcript	ncRNA
71895	chr15	22521621	22521880	+	0	NA	intron (NR_002824, intron 3 of 34).2	LTR53|LTR|ERVL	26899	NM_004667	8924		NM_004667	ENSG00000128731	HERC2	D15F37S1|MRT38|SHEP1|jdf2|p528	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding
218893	chr8	60660351	60661200	+	0	NA	Intergenic	Intergenic	-17965	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
71401	chr14	105527351	105527450	+	0	NA	5' UTR (NM_001331238, exon 1 of 2)	5' UTR (NM_001331238, exon 1 of 2)	295	NM_001331238	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
22703	chr1	223996721	223997180	+	0	NA	intron (NR_136592, intron 2 of 4)	MER33|DNA|hAT-Charlie	4220	NR_136593	100287497		NR_136590		SEPTIN7P13	-	septin 7 pseudogene 13	pseudo
75409	chr15	65767851	65768350	+	0	NA	intron (NM_001376919, intron 1 of 31)	AluJb|SINE|Alu	24193	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
184286	chr5	96805571	96806050	+	0	NA	intron (NM_001198541, intron 1 of 18)	intron (NM_001198541, intron 1 of 18)	2135	NM_001040458	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
175935	chr4	80425571	80425930	+	0	NA	intron (NM_001206997, intron 2 of 6)	intron (NM_001206997, intron 2 of 6)	90020	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
221370	chr8	123384401	123384600	+	0	NA	intron (NM_014109, intron 1 of 27)	intron (NM_014109, intron 1 of 27)	11947	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
236667	chrX	76279071	76279300	+	0	NA	Intergenic	L1MA8|LINE|L1	106123	NM_016500	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
106669	chr18	23134971	23136130	+	0	NA	promoter-TSS (NM_001100619)	promoter-TSS (NM_001100619)	-213	NM_001100619	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
221845	chr8	128241951	128242330	+	0	NA	Intergenic	MIR3|SINE|MIR	92024	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
35630	chr11	1831351	1831750	+	0	NA	Intergenic	Intergenic	-2877	NM_138567	90019		NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
115633	chr19	16100471	16101030	+	0	NA	intron (NM_001367836, intron 8 of 8)	AluJb|SINE|Alu	-11139	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
233024	chr9	137024171	137025000	+	0	NA	intron (NM_212533, intron 1 of 48)	intron (NM_212533, intron 1 of 48)	-2879	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
46881	chr11	134020871	134021230	+	0	NA	Intergenic	Intergenic	-11222	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
109783	chr19	1143301	1143500	+	0	NA	intron (NM_014963, intron 4 of 31)	AluJb|SINE|Alu	-11179	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
216081	chr8	10839501	10840800	+	0	NA	promoter-TSS (NM_001284356)	promoter-TSS (NM_001284356)	124	NR_125432	101929229		NR_125432		PINX1-DT	-	PINX1 divergent transcript	ncRNA
195470	chr6	37049971	37050660	+	0	NA	Intergenic	Intergenic	44660	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
182803	chr5	68884971	68885130	+	0	NA	Intergenic	Intergenic	144877	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
106580	chr18	22164171	22164350	+	0	NA	Intergenic	Intergenic	4708	NR_102763	100128893		NR_102763	ENSG00000266010	GATA6-AS1	BM742401|locus5689	GATA6 antisense RNA 1 (head to head)	ncRNA
53061	chr12	57693471	57695000	+	0	NA	exon (NM_001017958, exon 1 of 15)	exon (NM_001017958, exon 1 of 15)	103	NM_006812	10956		NM_006812	ENSG00000135506	OS9	ERLEC2|OS-9	OS9 endoplasmic reticulum lectin	protein-coding
227874	chr9	93672351	93672650	+	0	NA	intron (NM_005392, intron 17 of 21)	intron (NM_005392, intron 17 of 21)	77659	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
45057	chr11	117053351	117053450	+	0	NA	intron (NM_001281748, intron 1 of 24)	L2c|LINE|L2	45028	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
171276	chr3	195876501	195877230	+	0	NA	intron (NM_005781, intron 9 of 14)	intron (NM_005781, intron 9 of 14)	5530	NR_106887	102465977		NR_106887	ENSG00000276489	MIR6829	hsa-mir-6829	microRNA 6829	ncRNA
129662	chr2	70251521	70251980	+	0	NA	Intergenic	AluSz|SINE|Alu	1255	NR_031617	100302268		NR_031617	ENSG00000221238	MIR1285-2	MIRN1285-2|hsa-mir-1285-2	microRNA 1285-2	ncRNA
83421	chr16	27234971	27236130	+	0	NA	intron (NM_145080, intron 2 of 7)	intron (NM_145080, intron 2 of 7)	31575	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
33036	chr10	110817401	110817800	+	0	NA	intron (NM_001134363, intron 9 of 13)	L2c|LINE|L2	53304	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
46188	chr11	123382751	123383050	+	0	NA	intron (NM_001367418, intron 1 of 19)	LTR33|LTR|ERVL	-1388	NR_039714	100616319		NR_039714	ENSG00000265357	MIR4493	-	microRNA 4493	ncRNA
66571	chr14	63437121	63437380	+	0	NA	intron (NR_104104, intron 2 of 12)	MER41B|LTR|ERV1	70988	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
140684	chr2	234147371	234148230	+	0	NA	Intergenic	Intergenic	97098	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
131096	chr2	89829201	89829930	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-191658	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
12070	chr1	98871101	98872050	+	0	NA	Intergenic	LTR35B|LTR|ERV1	-132701	NR_033940	100129620		NR_033940	ENSG00000232825	PLPPR5-AS1	-	PLPPR5 antisense RNA 1	ncRNA
29711	chr10	72072821	72073250	+	0	NA	intron (NM_014767, intron 2 of 11)	intron (NM_014767, intron 2 of 11)	15516	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
237484	chrX	119852401	119853410	+	0	NA	promoter-TSS (NM_080632)	promoter-TSS (NM_080632)	58	NM_080632	65109		NM_023010	ENSG00000125351	UPF3B	HUPF3B|MRX62|MRX82|MRXS14|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X|Upf3p-X	UPF3B regulator of nonsense mediated mRNA decay	protein-coding
7453	chr1	33052371	33052530	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-15539	NM_001319143	204		NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
4912	chr1	23854521	23854900	+	0	NA	intron (NM_000147, intron 4 of 7)	MER20|DNA|hAT-Charlie	13580	NM_000147	2517		NM_000147	ENSG00000179163	FUCA1	FUCA	alpha-L-fucosidase 1	protein-coding
115734	chr19	16261951	16262680	+	0	NA	Intergenic	Intergenic	-62511	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
18162	chr1	160781151	160781550	+	0	NA	Intergenic	Intergenic	-14824	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
152101	chr22	19873671	19873830	+	0	NA	Intergenic	Intergenic	-18876	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
17086	chr1	156133501	156134030	+	0	NA	intron (NM_170707, intron 2 of 11)	L2c|LINE|L2	7595	NM_001257374	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
46723	chr11	128886451	128887230	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-4516	NM_001354169	3762		NM_000890	ENSG00000120457	KCNJ5	CIR|GIRK4|KATP1|KIR3.4|LQT13	potassium inwardly rectifying channel subfamily J member 5	protein-coding
170968	chr3	194490871	194491130	+	0	NA	Intergenic	AluSx|SINE|Alu	3860	NR_033929	401106		NR_033929		ATP13A3-DT	LINC00884	ATP13A3 divergent transcript	ncRNA
188785	chr5	157820551	157820900	+	0	NA	intron (NM_001195556, intron 1 of 11)	intron (NM_001195556, intron 1 of 11)	38420	NM_014666	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
140783	chr2	235669301	235670100	+	0	NA	intron (NM_001037131, intron 1 of 17)	CpG	-151779	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
67779	chr14	73745021	73745830	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-13322	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
19458	chr1	174883451	174883550	+	0	NA	intron (NM_001366454, intron 3 of 8)	intron (NM_001366454, intron 3 of 8)	7982	NM_001035230	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
107413	chr18	46177371	46177850	+	0	NA	intron (NM_145055, intron 1 of 4)	AluSx1|SINE|Alu	3576	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
142100	chr20	2646771	2647430	+	0	NA	Intergenic	Intergenic	-5532	NR_027700	10528		NM_006392	ENSG00000101361	NOP56	NOL5A|SCA36	NOP56 ribonucleoprotein	protein-coding
128543	chr2	60821321	60821850	+	0	NA	Intergenic	AluSg|SINE|Alu	59729	NR_033980	400957		NR_033980	ENSG00000228414	REL-DT	LINC01185	REL divergent transcript	ncRNA
133343	chr2	113917751	113918380	+	0	NA	intron (NM_005721, intron 3 of 11)	L2c|LINE|L2	-27073	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
85618	chr16	53913371	53913950	+	0	NA	intron (NM_001363894, intron 8 of 9)	intron (NM_001363894, intron 8 of 9)	-125733	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
181715	chr5	50670901	50671550	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	3811	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
203229	chr6	168849771	168850730	+	0	NA	Intergenic	Intergenic	114132	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
17273	chr1	156418001	156418200	+	0	NA	intron (NR_135268, intron 1 of 6)	intron (NR_135268, intron 1 of 6)	2329	NR_029691	407046		NR_029691	ENSG00000207933	MIR9-1	MIRN9-1|hsa-mir-9-1|miRNA9-1|mir-9-1	microRNA 9-1	ncRNA
133227	chr2	113187121	113187780	+	0	NA	intron (NM_012455, intron 5 of 16)	intron (NM_012455, intron 5 of 16)	13479	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
216200	chr8	11861221	11861680	+	0	NA	5' UTR (NM_147783, exon 2 of 11).2	5' UTR (NM_147783, exon 2 of 11).2	6637	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
16476	chr1	154669621	154670200	+	0	NA	Intergenic	Intergenic	-41913	NM_001365045	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
2278	chr1	8943271	8943830	+	0	NA	Intergenic	Intergenic	-2318	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
109684	chr19	1036751	1037050	+	0	NA	intron (NM_201277, intron 5 of 5)	AluSx|SINE|Alu	-3207	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
210872	chr7	101143071	101143230	+	0	NA	Intergenic	Intergenic	-11326	NM_001283	1174		NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A	adaptor related protein complex 1 subunit sigma 1	protein-coding
32321	chr10	102174021	102174280	+	0	NA	Intergenic	FLAM_C|SINE|Alu	21761	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
131404	chr2	96273151	96273830	+	0	NA	TTS (NM_014014)	TTS (NM_014014)	7265	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
205488	chr7	17859121	17859880	+	0	NA	intron (NM_015132, intron 9 of 25)	L1M1|LINE|L1	80994	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
14414	chr1	144315751	144316050	+	0	NA	Intergenic	Intergenic	-1962	NR_160535	105371215		NR_160535		LOC105371215	-	uncharacterized LOC105371215	ncRNA
92222	chr17	7881371	7881730	+	0	NA	intron (NM_001330111, intron 2 of 4)	intron (NM_001330111, intron 2 of 4)	-3246	NM_001005271	1107		NM_001272	ENSG00000170004	CHD3	Mi-2a|Mi2-ALPHA|SNIBCPS|ZFH	chromodomain helicase DNA binding protein 3	protein-coding
20572	chr1	198733571	198733930	+	0	NA	intron (NM_002838, intron 20 of 32)	intron (NM_002838, intron 20 of 32)	94710	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
208403	chr7	66697921	66698950	+	0	NA	intron (NM_001367745, intron 1 of 7)	intron (NM_001367745, intron 1 of 7)	16269	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
139398	chr2	222307021	222307280	+	0	NA	Intergenic	Intergenic	-8152	NM_000438	5077		NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|PAX-3|WS1|WS3	paired box 3	protein-coding
194876	chr6	34657441	34658600	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-38134	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
59444	chr13	25888051	25888550	+	0	NA	intron (NM_016529, intron 33 of 36)	intron (NM_016529, intron 33 of 36)	163716	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
171027	chr3	195128171	195128630	+	0	NA	intron (NM_001308069, intron 3 of 3)	intron (NM_001308069, intron 3 of 3)	6180	NR_036089	100422926		NR_036089	ENSG00000265333	MIR3137	-	microRNA 3137	ncRNA
160457	chr3	30289351	30289750	+	0	NA	Intergenic	MIRb|SINE|MIR	-229318	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
78650	chr15	94286421	94286930	+	0	NA	intron (NM_001385002, intron 2 of 23)	intron (NM_001385002, intron 2 of 23)	55114	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
166228	chr3	112117051	112117550	+	0	NA	3' UTR (NM_001171747, exon 4 of 4)	3' UTR (NM_001171747, exon 4 of 4)	4499	NR_030292	693152		NR_030292	ENSG00000207940	MIR567	MIRN567|hsa-mir-567	microRNA 567	ncRNA
193923	chr6	31640401	31641730	+	0	NA	intron (NM_080702, intron 19 of 24).6	intron (NM_080702, intron 19 of 24).6	7278	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
75521	chr15	66500271	66500850	+	0	NA	TTS (NR_002443)	TTS (NR_002443)	758	NR_002443	595100		NR_002443	ENSG00000199574	SNORD18C	U18C	small nucleolar RNA, C/D box 18C	snoRNA
100944	chr17	64483951	64484050	+	0	NA	intron (NM_007215, intron 5 of 7)	AluJb|SINE|Alu	13054	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
71529	chr14	106176021	106176280	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-111524	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
236305	chrX	68490671	68490850	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-8022	NM_001195214	286451		NM_173834	ENSG00000181704	YIPF6	FinGER6|YIPFalpha3|Yip4	Yip1 domain family member 6	protein-coding
13298	chr1	113140501	113140950	+	0	NA	Intergenic	Intergenic	65528	NR_038846	643441		NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
79602	chr16	1067601	1068000	+	0	NA	intron (NR_027242, intron 2 of 3)	(GTTGTG)n|Simple_repeat|Simple_repeat	-4956	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
132888	chr2	111302721	111302980	+	0	NA	intron (NR_136161, intron 3 of 5)	intron (NR_136161, intron 3 of 5)	18236	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
86330	chr16	66379651	66380350	+	0	NA	intron (NM_001795, intron 2 of 11)	intron (NM_001795, intron 2 of 11)	13309	NM_001795	1003		NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
205615	chr7	22292471	22292830	+	0	NA	intron (NM_012294, intron 5 of 25)	intron (NM_012294, intron 5 of 25)	64504	NM_012294	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
19810	chr1	182613001	182613200	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-2040	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
230242	chr9	127883371	127883530	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3829	NM_001318121	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
17753	chr1	159011801	159012100	+	0	NA	intron (NM_001376587, intron 1 of 11)	intron (NM_001376587, intron 1 of 11)	2043	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
94763	chr17	30820771	30821180	+	0	NA	intron (NM_015986, intron 1 of 7)	AluJo|SINE|Alu	3717	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
95488	chr17	36229651	36229950	+	0	NA	Intergenic	Intergenic	18737	NR_111970	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
5895	chr1	26803421	26803980	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	15512	NM_001374482	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
129916	chr2	73286051	73286150	+	0	NA	Intergenic	Intergenic	-1622	NM_001080410	150726		NM_001080410	ENSG00000163013	FBXO41	FBX41	F-box protein 41	protein-coding
67259	chr14	69107401	69107900	+	0	NA	intron (NM_001284208, intron 5 of 6)	intron (NM_001284208, intron 5 of 6)	44949	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
57316	chr12	121677151	121677330	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-4596	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
54840	chr12	95002851	95004430	+	0	NA	promoter-TSS (NM_001258338)	promoter-TSS (NM_001258338)	57	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
90576	chr17	1532971	1533700	+	0	NA	intron (NM_006224, intron 10 of 11)	MIR|SINE|MIR	16416	NR_028514	100306951		NR_028514	ENSG00000236618	PITPNA-AS1	-	PITPNA antisense RNA 1	ncRNA
22226	chr1	212564801	212565450	+	0	NA	promoter-TSS (NM_001030287)	promoter-TSS (NM_001030287)	-209	NM_001030287	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
206016	chr7	26295121	26295380	+	0	NA	intron (NM_001318199, intron 1 of 6)	AluJb|SINE|Alu	2219	NM_001318199	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
141339	chr2	240577351	240577830	+	0	NA	intron (NM_018226, intron 10 of 10)	intron (NM_018226, intron 10 of 10)	8726	NR_103792	101752400		NR_103792	ENSG00000260942	CAPN10-DT	CAPN10-AS1|locus959	CAPN10 divergent transcript	ncRNA
36318	chr11	3863251	3863550	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluJb|SINE|Alu	7338	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
133076	chr2	112431401	112431700	+	0	NA	intron (NM_005054, intron 1 of 22).3	intron (NM_005054, intron 1 of 22).3	2064	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
122478	chr19	49553651	49554350	+	0	NA	Intergenic	Intergenic	25997	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
154564	chr22	36254771	36254930	+	0	NA	intron (NM_145343, intron 2 of 6)	AluY|SINE|Alu	1717	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
4607	chr1	22091221	22091580	+	0	NA	TTS (NM_044472)	TTS (NM_044472)	38691	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
10855	chr1	77972171	77972750	+	0	NA	intron (NR_146539, intron 1 of 22)	intron (NR_146539, intron 1 of 22)	6612	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
135785	chr2	169787171	169787330	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-11621	NM_003142	6741		NM_003142	ENSG00000138385	SSB	LARP3|La|La/SSB	small RNA binding exonuclease protection factor La	protein-coding
116830	chr19	18569651	18570530	+	0	NA	TTS (NM_024069)	TTS (NM_024069)	-1640	NM_001321017	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
173296	chr4	7101821	7102380	+	0	NA	intron (NR_027441, intron 1 of 1)	intron (NR_027441, intron 1 of 1)	1276	NR_027441	730971		NR_027441		LINC02447	-	long intergenic non-protein coding RNA 2447	ncRNA
149944	chr21	36323051	36323150	+	0	NA	intron (NM_001320445, intron 1 of 15)	HAL1|LINE|L1	2903	NM_015358	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
96647	chr17	40611651	40611750	+	0	NA	Intergenic	AluJr4|SINE|Alu	36118	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
186498	chr5	138331121	138332530	+	0	NA	promoter-TSS (NR_146628)	promoter-TSS (NR_146628)	-21	NM_001790	995		NM_001790	ENSG00000158402	CDC25C	CDC25|PPP1R60	cell division cycle 25C	protein-coding
217435	chr8	28493801	28495800	+	0	NA	intron (NM_145866, intron 1 of 6)	CpG	588	NM_017412	7976		NM_017412	ENSG00000104290	FZD3	Fz-3	frizzled class receptor 3	protein-coding
7320	chr1	32648551	32649100	+	0	NA	intron (NM_001366257, intron 1 of 6)	AluSx1|SINE|Alu	1725	NM_001366278	339487		NM_178547	ENSG00000176261	ZBTB8OS	ARCH|ARCH2	zinc finger and BTB domain containing 8 opposite strand	protein-coding
37999	chr11	35058171	35058880	+	0	NA	Intergenic	LTR16D2|LTR|ERVL	79507	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
200194	chr6	131061951	131062700	+	0	NA	intron (NM_001350314, intron 1 of 15)	CpG	920	NM_001431	2037		NM_001431	ENSG00000079819	EPB41L2	4.1-G|4.1G	erythrocyte membrane protein band 4.1 like 2	protein-coding
4748	chr1	23483521	23485130	+	0	NA	promoter-TSS (NM_001143778)	promoter-TSS (NM_001143778)	-146	NM_017707	55616		NM_017707	ENSG00000088280	ASAP3	ACAP4|CENTB6|DDEFL1|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding
24499	chr1	244442951	244443250	+	0	NA	intron (NM_001365073, intron 1 of 12)	Helitron3Na_Mam|RC|Helitron	8809	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
238590	chrX	153900701	153901800	+	0	NA	Intergenic	Intergenic	-1375	NR_027419	554		NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|NDI1|V2R	arginine vasopressin receptor 2	protein-coding
223390	chr8	143916671	143917200	+	0	NA	exon (NM_000445, exon 33 of 33)	exon (NM_000445, exon 33 of 33)	22662	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
175502	chr4	73446401	73446630	+	0	NA	intron (NM_001134, intron 7 of 14)	intron (NM_001134, intron 7 of 14)	10294	NM_001354717	174		NM_001134	ENSG00000081051	AFP	AFPD|FETA|HPAFP	alpha fetoprotein	protein-coding
127826	chr2	44944121	44944750	+	0	NA	intron (NM_005413, intron 1 of 1)	CpG	-2557	NR_103786	100506108		NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA
61394	chr13	51583321	51585180	+	0	NA	promoter-TSS (NM_052950)	promoter-TSS (NM_052950)	-212	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
202925	chr6	160348351	160349100	+	0	NA	exon (NM_021977, exon 1 of 11)	exon (NM_021977, exon 1 of 11)	347	NM_021977	6581		NM_021977	ENSG00000146477	SLC22A3	EMT|EMTH|OCT3	solute carrier family 22 member 3	protein-coding
146596	chr20	50118451	50118750	+	0	NA	3' UTR (NM_001162505, exon 6 of 6)	3' UTR (NM_001162505, exon 6 of 6)	-2643	NM_022442	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
36582	chr11	6681971	6682150	+	0	NA	3' UTR (NM_022061, exon 3 of 3)	3' UTR (NM_022061, exon 3 of 3)	1280	NM_022061	63875		NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26|bL17m	mitochondrial ribosomal protein L17	protein-coding
235111	chrX	40643221	40643480	+	0	NA	intron (NM_001330455, intron 2 of 6)	L1MB7|LINE|L1	4211	NM_144970	159013		NM_144970	ENSG00000185753	CXorf38	-	chromosome X open reading frame 38	protein-coding
162758	chr3	49060551	49061200	+	0	NA	intron (NM_001320580, intron 3 of 10)	AluSz|SINE|Alu	-31477	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
92714	chr17	14199421	14200050	+	0	NA	intron (NM_001303, intron 6 of 6)	intron (NM_001303, intron 6 of 6)	37127	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
44082	chr11	95690621	95690880	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	99032	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
107295	chr18	44733471	44733830	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	32775	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
179980	chr5	862721	862980	+	0	NA	TTS (NM_001375863)	TTS (NM_001375863)	-11864	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
216814	chr8	22568901	22569630	+	0	NA	exon (NM_001018003, exon 6 of 10)	exon (NM_001018003, exon 6 of 10)	3536	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
161624	chr3	43285251	43285350	+	0	NA	Intergenic	Intergenic	-1212	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
40791	chr11	64893921	64894900	+	0	NA	promoter-TSS (NR_133639)	promoter-TSS (NR_133639)	-961	NR_133638	105369343		NR_133638	ENSG00000229719	MIR194-2HG	-	MIR194-2 host gene	ncRNA
62048	chr13	91331221	91331680	+	0	NA	Intergenic	Intergenic	-16370	NR_027349	407975		NM_213723	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA
157803	chr22	46793751	46794050	+	0	NA	intron (NM_001284303, intron 2 of 10)	intron (NM_001284303, intron 2 of 10)	19973	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
173268	chr4	7049421	7049680	+	0	NA	intron (NM_152293, intron 1 of 1)	intron (NM_152293, intron 1 of 1)	-3319	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
186466	chr5	137995071	137995680	+	0	NA	intron (NM_016603, intron 7 of 22)	intron (NM_016603, intron 7 of 22)	-37399	NR_037900	100130172		NR_037900		FAM13B-AS1	-	FAM13B antisense RNA 1	ncRNA
92675	chr17	12022271	12022900	+	0	NA	intron (NM_003010, intron 1 of 10)	intron (NM_003010, intron 1 of 10)	1708	NM_003010	6416		NM_003010	ENSG00000065559	MAP2K4	JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1	mitogen-activated protein kinase kinase 4	protein-coding
27347	chr10	30687571	30688000	+	0	NA	Intergenic	Intergenic	-4489	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
141033	chr2	238200671	238201100	+	0	NA	intron (NM_030768, intron 1 of 11)	MIR|SINE|MIR	2810	NM_030768	80895		NM_030768	ENSG00000132323	ILKAP	ILKAP2|ILKAP3|PP2C-DELTA|PP2CD|PPM1O	ILK associated serine/threonine phosphatase	protein-coding
190841	chr6	1607721	1608180	+	0	NA	TTS (NR_125804)	TTS (NR_125804)	-1965	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
25067	chr10	3808671	3808870	+	0	NA	Intergenic	LTR57-int|LTR|ERVL	-23489	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
184764	chr5	110031521	110031950	+	0	NA	Intergenic	Intergenic	148553	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
165961	chr3	107846301	107846530	+	0	NA	intron (NR_024276, intron 5 of 7)	intron (NR_024276, intron 5 of 7)	31653	NR_024276	151658		NR_015414	ENSG00000241469	LINC00635	-	long intergenic non-protein coding RNA 635	ncRNA
163190	chr3	50209621	50209880	+	0	NA	intron (NM_006841, intron 1 of 15)	intron (NM_006841, intron 1 of 15)	4479	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
149022	chr21	14555121	14555780	+	0	NA	intron (NM_001256370, intron 2 of 8)	intron (NM_001256370, intron 2 of 8)	-9090	NM_001286523	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
3457	chr1	15940721	15941830	+	0	NA	TTS (NM_001324137)	TTS (NM_001324137)	34826	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
12463	chr1	107840571	107841450	+	0	NA	intron (NM_006113, intron 2 of 26)	L2|LINE|L2	-56213	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
56612	chr12	118137901	118138300	+	0	NA	exon (NM_002567, exon 2 of 4)	exon (NM_002567, exon 2 of 4)	1976	NM_002567	5037		NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
180152	chr5	1380151	1381030	+	0	NA	promoter-TSS (NR_125810)	promoter-TSS (NR_125810)	-517	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
146568	chr20	50053121	50053380	+	0	NA	Intergenic	Intergenic	-11621	NR_051976	100887755		NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
8122	chr1	39229671	39230150	+	0	NA	intron (NM_012090, intron 1 of 92)	AluSz|SINE|Alu	145743	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
68185	chr14	76352771	76353000	+	0	NA	Intergenic	CpG	-18386	NM_004452	2103		NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR beta-2|ERR2|ERRb|ERRbeta2|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
153054	chr22	23280871	23281030	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	18183	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
143712	chr20	32250371	32250730	+	0	NA	Intergenic	AluSx|SINE|Alu	12755	NR_031726	100302183		NR_031726	ENSG00000284125	MIR1825	MIRN1825|hsa-mir-1825	microRNA 1825	ncRNA
130927	chr2	87487471	87487630	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	17600	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
200929	chr6	139154051	139154480	+	0	NA	intron (NM_016217, intron 1 of 3)	MER2|DNA|TcMar-Tigger	19185	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
113462	chr19	9911951	9912450	+	0	NA	intron (NM_058164, intron 1 of 5)	intron (NM_058164, intron 1 of 5)	1601	NM_001304347	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
178324	chr4	145626001	145626800	+	0	NA	intron (NM_001375644, intron 1 of 6)	intron (NM_001375644, intron 1 of 6)	7015	NM_172250	166785		NM_172250	ENSG00000151611	MMAA	cblA	metabolism of cobalamin associated A	protein-coding
40982	chr11	65384071	65384850	+	0	NA	promoter-TSS (NM_001278251)	promoter-TSS (NM_001278251)	-759	NM_001278251	283130		NM_182556	ENSG00000162241	SLC25A45	-	solute carrier family 25 member 45	protein-coding
139366	chr2	221517001	221519200	+	0	NA	intron (NM_004438, intron 3 of 17)	intron (NM_004438, intron 3 of 17)	54204	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
73076	chr15	40925751	40926780	+	0	NA	Intergenic	CpG	-3075	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
83509	chr16	27444421	27444830	+	0	NA	exon (NM_181079, exon 7 of 10)	exon (NM_181079, exon 7 of 10)	8768	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
119131	chr19	39369121	39369380	+	0	NA	intron (NM_001384588, intron 4 of 13)	7SLRNA|srpRNA|srpRNA	21856	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
161723	chr3	43996521	43997330	+	0	NA	Intergenic	CpG	-117287	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA
171249	chr3	195815671	195816080	+	0	NA	Intergenic	Intergenic	-3902	NM_001322468	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
87527	chr16	71898751	71899130	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluSg|SINE|Alu	3409	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
5597	chr1	26038871	26039030	+	0	NA	3' UTR (NM_001004434, exon 8 of 8)	3' UTR (NM_001004434, exon 8 of 8)	7168	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
120777	chr19	45435371	45435730	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluJo|SINE|Alu	-1104	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
187101	chr5	140357101	140357980	+	0	NA	Intergenic	Intergenic	-2654	NM_001258427	83697		NM_031467	ENSG00000113073	SLC4A9	AE4	solute carrier family 4 member 9	protein-coding
131172	chr2	92042871	92043030	+	0	NA	Intergenic	CpG	101817	NR_027714	440888		NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
46206	chr11	123554901	123555250	+	0	NA	intron (NM_001286563, intron 1 of 20)	LTR41C|LTR|ERVL	-5187	NM_001286564	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
63087	chr13	113211651	113212000	+	0	NA	intron (NM_003589, intron 2 of 19)	L1ME1|LINE|L1	2212	NM_001008895	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
169732	chr3	172447521	172448880	+	0	NA	exon (NM_198407, exon 1 of 2)	exon (NM_198407, exon 1 of 2)	256	NM_004122	2693		NM_004122	ENSG00000121853	GHSR	GHDP|GHS-R1a|GHSR-1a	growth hormone secretagogue receptor	protein-coding
73283	chr15	41860121	41860780	+	0	NA	intron (NM_016642, intron 47 of 67)	intron (NM_016642, intron 47 of 67)	6101	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
100022	chr17	57957431	57957830	+	0	NA	Intergenic	Intergenic	-2218	NM_001271875	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
113575	chr19	10263871	10264230	+	0	NA	Intergenic	AluYf1|SINE|Alu	-7070	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
47403	chr12	2875401	2875950	+	0	NA	promoter-TSS (NR_046433)	promoter-TSS (NR_046433)	-590	NR_046433	83695		NM_001252499	ENSG00000171792	RHNO1	C12orf32|HKMT1188|RHINO	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding
165855	chr3	105866401	105867320	+	0	NA	intron (NM_001321811, intron 2 of 16)	intron (NM_001321811, intron 2 of 16)	731	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
75670	chr15	67818621	67818880	+	0	NA	Intergenic	Intergenic	-6759	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
8017	chr1	38020851	38020950	+	0	NA	intron (NM_016037, intron 6 of 7)	intron (NM_016037, intron 6 of 7)	8166	NM_016037	51118		NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11 small subunit processome component	protein-coding
184663	chr5	107672271	107672780	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-1588	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
154105	chr22	31086421	31087630	+	0	NA	intron (NM_001207018, intron 1 of 19)	intron (NM_001207018, intron 1 of 19)	2029	NM_001207018	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
81053	chr16	4320371	4320530	+	0	NA	intron (NM_032575, intron 1 of 6).2	MIRb|SINE|MIR	4383	NM_032575	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
239155	chrY	11332771	11333500	+	0	NA	Intergenic	CpG	1088455	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
18908	chr1	168365801	168366150	+	0	NA	Intergenic	Intergenic	-9549	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
203096	chr6	166412921	166413800	+	0	NA	intron (NM_021135, intron 20 of 20)	intron (NM_021135, intron 20 of 20)	-30420	NR_164831	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
14889	chr1	146937881	146939800	+	0	NA	5' UTR (NM_001278141, exon 1 of 37)	5' UTR (NM_001278141, exon 1 of 37)	295	NM_001278141	149013		NM_001278141	ENSG00000268043	NBPF12	COAS1|KIAA1245	NBPF member 12	protein-coding
85034	chr16	31710271	31710930	+	0	NA	Intergenic	AluJb|SINE|Alu	-2629	NM_001130913	124411		NM_001004300	ENSG00000197302	KRBOX5	ZNF720	KRAB box domain containing 5	protein-coding
148998	chr21	14481571	14481730	+	0	NA	Intergenic	L2a|LINE|L2	64665	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
212727	chr7	129840821	129841850	+	0	NA	intron (NM_182697, intron 3 of 4)	intron (NM_182697, intron 3 of 4)	-66321	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
153830	chr22	29881121	29881380	+	0	NA	Intergenic	AluJb|SINE|Alu	-1919	NM_153050	8897		NM_021090	ENSG00000100330	MTMR3	FYVE-DSP1|ZFYVE10	myotubularin related protein 3	protein-coding
91114	chr17	3683001	3683830	+	0	NA	intron (NM_002561, intron 9 of 11)	intron (NM_002561, intron 9 of 11)	12740	NM_001204519	5026		NM_002561	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X 5	protein-coding
147353	chr20	58312101	58312630	+	0	NA	intron (NM_020673, intron 2 of 6)	AluJb|SINE|Alu	2650	NM_020673	57403		NM_020673	ENSG00000124209	RAB22A	-	RAB22A, member RAS oncogene family	protein-coding
60146	chr13	39823221	39823480	+	0	NA	Intergenic	Intergenic	-159215	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
183418	chr5	78292871	78293030	+	0	NA	intron (NM_003664, intron 1 of 26)	AluSz|SINE|Alu	1748	NM_003664	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
176216	chr4	84496671	84497030	+	0	NA	intron (NM_006168, intron 1 of 2)	CpG	2442	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
12599	chr1	109039821	109040250	+	0	NA	intron (NM_001142550, intron 1 of 14)	AluSx1|SINE|Alu	2067	NM_001142551	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
170947	chr3	194350121	194350380	+	0	NA	intron (NM_001080513, intron 1 of 1)	L2b|LINE|L2	1078	NM_001080513	1370		NM_001309	ENSG00000178772	CPN2	ACBP	carboxypeptidase N subunit 2	protein-coding
238023	chrX	135095771	135096100	+	0	NA	3' UTR (NM_001348255, exon 2 of 2)	3' UTR (NM_001348255, exon 2 of 2)	2777	NM_001348255	644596		NM_001348255	ENSG00000196972	SMIM10L2B	LINC00086|LINC00087|NCRNA00086|NCRNA00087|SMIM10L2A	small integral membrane protein 10 like 2B	protein-coding
130174	chr2	82525421	82525680	+	0	NA	Intergenic	L1MCc|LINE|L1	-331253	NR_033423	1720		NR_033423		DHFRP3	-	dihydrofolate reductase pseudogene 3	pseudo
215989	chr8	8871951	8873050	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	21130	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
125898	chr2	24749351	24749450	+	0	NA	intron (NM_147233, intron 17 of 20)	L1ME1|LINE|L1	-43715	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
143831	chr20	32506251	32506350	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	-3659	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
101024	chr17	64779921	64780900	+	0	NA	promoter-TSS (NR_106728)	promoter-TSS (NR_106728)	-349	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
204558	chr7	5142751	5143480	+	0	NA	intron (NR_034163, intron 1 of 5)	intron (NR_034163, intron 1 of 5)	1431	NR_034163	645700		NR_034163	ENSG00000291037	ZNF890P	-	zinc finger protein 890, pseudogene	pseudo
226310	chr9	68905251	68905350	+	0	NA	intron (NM_001278253, intron 7 of 13)	intron (NM_001278253, intron 7 of 13)	70541	NR_110647	101927069		NR_110647		LOC101927069	-	uncharacterized LOC101927069	ncRNA
194439	chr6	33161451	33162650	+	0	NA	TTS (NM_080679).7	TTS (NM_080679).7	18726	NR_138084	414768		NR_138084		HCG24	-	HLA complex group 24	ncRNA
183685	chr5	80688671	80689180	+	0	NA	intron (NM_002439, intron 8 of 23)	intron (NM_002439, intron 8 of 23)	-33942	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
65694	chr14	52737601	52738100	+	0	NA	intron (NM_001130701, intron 2 of 11)	AluY|SINE|Alu	7684	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
218071	chr8	38922971	38923530	+	0	NA	intron (NM_021623, intron 2 of 11)	MIRb|SINE|MIR	21904	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
143516	chr20	31541871	31542630	+	0	NA	TTS (NM_178582)	TTS (NM_178582)	27808	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
108570	chr18	74996151	74996450	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	209213	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
172691	chr4	2759221	2759480	+	0	NA	Intergenic	AluJo|SINE|Alu	-3014	NM_024309	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
106856	chr18	24056221	24056850	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-41075	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
167921	chr3	136175171	136175530	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSg|SINE|Alu	19118	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
7899	chr1	36609271	36609530	+	0	NA	Intergenic	Intergenic	-126086	NM_156039	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
209378	chr7	76305121	76305480	+	0	NA	Intergenic	Intergenic	2627	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
40266	chr11	63772201	63772600	+	0	NA	Intergenic	Intergenic	-3625	NM_001144936	65998		NM_023941	ENSG00000188070	ZFTA	C11orf95	zinc finger translocation associated	protein-coding
186775	chr5	139341021	139343350	+	0	NA	promoter-TSS (NM_001033112)	promoter-TSS (NM_001033112)	-249	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
32629	chr10	103677721	103678780	+	0	NA	promoter-TSS (NM_001365079)	promoter-TSS (NM_001365079)	-35	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
78417	chr15	92109551	92109650	+	0	NA	intron (NM_013272, intron 4 of 9)	intron (NM_013272, intron 4 of 9)	255296	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
160622	chr3	31522051	31522430	+	0	NA	Intergenic	Intergenic	-10685	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
201227	chr6	143566971	143567750	+	0	NA	intron (NR_027113, intron 1 of 2)	intron (NR_027113, intron 1 of 2)	1979	NR_027113	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
58665	chr12	132531051	132531580	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	25909	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
131229	chr2	95207021	95207930	+	0	NA	Intergenic	CpG	41666	NM_001282398	7549		NM_021088	ENSG00000275111	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
38227	chr11	36427701	36427900	+	0	NA	intron (NM_001160167, intron 4 of 8)	intron (NM_001160167, intron 4 of 8)	26803	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
22514	chr1	221800901	221801480	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	39476	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
122795	chr19	50347101	50347500	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-2552	NR_002798	256236		NR_002798	ENSG00000291230	NAPSB	NAP1L|NAP2|NAPB|NAPSBP	napsin B aspartic peptidase (pseudogene)	pseudo
201343	chr6	144566851	144567540	+	0	NA	intron (NM_007124, intron 49 of 73)	L2a|LINE|L2	-15953	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
171138	chr3	195548921	195549400	+	0	NA	Intergenic	Intergenic	-5835	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
123544	chr19	54369001	54369200	+	0	NA	intron (NM_001289026, intron 1 of 9).5	L1MD3|LINE|L1	1456	NM_001289027	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
138344	chr2	203871221	203871950	+	0	NA	intron (NM_005214, intron 3 of 3)	intron (NM_005214, intron 3 of 3)	3814	NM_001037631	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
64221	chr14	23068671	23069780	+	0	NA	intron (NM_014977, intron 9 of 18)	intron (NM_014977, intron 9 of 18)	2344	NM_001164817	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
169536	chr3	170163551	170163650	+	0	NA	intron (NM_001308116, intron 4 of 14)	AluSx1|SINE|Alu	18133	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
54134	chr12	76531771	76531930	+	0	NA	intron (NM_001003712, intron 1 of 22)	AluY|SINE|Alu	27921	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
41449	chr11	66099401	66099600	+	0	NA	intron (NM_018026, intron 1 of 23)	AluY|SINE|Alu	29228	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
45441	chr11	118437301	118438000	+	0	NA	intron (NM_001197104, intron 1 of 35)	intron (NM_001197104, intron 1 of 35)	1158	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
58690	chr12	132552051	132552550	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-29697	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
1301	chr1	2381401	2382630	+	0	NA	intron (NR_125361, intron 5 of 6)	intron (NR_125361, intron 5 of 6)	9539	NR_125361	79906		NM_024848	ENSG00000116151	MORN1	-	MORN repeat containing 1	protein-coding
169811	chr3	177061671	177061830	+	0	NA	intron (NM_001374330, intron 2 of 14)	intron (NM_001374330, intron 2 of 14)	134728	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
85817	chr16	56986351	56986450	+	0	NA	Intergenic	Intergenic	-3157	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
181154	chr5	38969471	38969830	+	0	NA	intron (NM_001285439, intron 11 of 38)	Tigger3b|DNA|TcMar-Tigger	104749	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
39106	chr11	48052451	48052850	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-44132	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
79979	chr16	1791051	1791730	+	0	NA	exon (NM_001146006, exon 2 of 2)	exon (NM_001146006, exon 2 of 2)	2315	NM_004970	3483		NM_004970	ENSG00000099769	IGFALS	ACLSD|ALS	insulin like growth factor binding protein acid labile subunit	protein-coding
115082	chr19	14218471	14218900	+	0	NA	Intergenic	Intergenic	-12516	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
236648	chrX	75232271	75232430	+	0	NA	intron (NM_001363821, intron 4 of 9)	L1PA3|LINE|L1	-41709	NM_001307944	139596		NM_145052	ENSG00000094841	UPRT	FUR1|UPP	uracil phosphoribosyltransferase homolog	protein-coding
190396	chr5	179800601	179801080	+	0	NA	intron (NM_014275, intron 5 of 14)	intron (NM_014275, intron 5 of 14)	2035	NM_054013	11282		NM_014275	ENSG00000161013	MGAT4B	GNT-IV|GNT-IVB	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B	protein-coding
142157	chr20	2820951	2821530	+	0	NA	TTS (NM_001318207)	TTS (NM_001318207)	4876	NM_001167670	100288797		NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
209901	chr7	91950151	91950400	+	0	NA	intron (NM_147185, intron 1 of 49)	AluYj4|SINE|Alu	9413	NM_005751	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
131047	chr2	88284371	88284530	+	0	NA	Intergenic	CpG	114104	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
201049	chr6	142207201	142207730	+	0	NA	intron (NM_016485, intron 7 of 7)	L1MA4|LINE|L1	60202	NM_016485	51534		NM_016485	ENSG00000009844	VTA1	6orf55|C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1	vesicle trafficking 1	protein-coding
16534	chr1	154948371	154948530	+	0	NA	intron (NM_001317734, intron 4 of 9)	intron (NM_001317734, intron 4 of 9)	-5792	NM_001323012	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
216257	chr8	12431901	12432250	+	0	NA	intron (NR_148878, intron 3 of 6)	intron (NR_148878, intron 3 of 6)	4223	NR_148878	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
20776	chr1	201017251	201018080	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	6049	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
137451	chr2	196985401	196985800	+	0	NA	Intergenic	Intergenic	-58893	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
120799	chr19	45459351	45460150	+	0	NA	Intergenic	AluSx|SINE|Alu	-8203	NM_001369413	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
63439	chr13	114108571	114108830	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	23923	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
98604	chr17	47748621	47749030	+	0	NA	Intergenic	L1ME3F|LINE|L1	15589	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
21078	chr1	203311821	203314100	+	0	NA	Intergenic	Intergenic	7441	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
210428	chr7	100087501	100087750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1344	NM_006833	10980		NM_006833	ENSG00000168090	COPS6	CSN6|MOV34-34KD	COP9 signalosome subunit 6	protein-coding
189245	chr5	172002171	172002980	+	0	NA	intron (NM_001378976, intron 1 of 14)	intron (NM_001378976, intron 1 of 14)	4063	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
77118	chr15	78941971	78942530	+	0	NA	intron (NM_001319137, intron 1 of 12)	AluSx1|SINE|Alu	2796	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
57788	chr12	123071721	123072630	+	0	NA	intron (NM_001300801, intron 2 of 25)	MIRc|SINE|MIR	-9209	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
196187	chr6	42661401	42661910	+	0	NA	intron (NM_001363705, intron 30 of 46)	intron (NM_001363705, intron 30 of 46)	60942	NM_000322	5961		NM_000322	ENSG00000112619	PRPH2	AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2	peripherin 2	protein-coding
209651	chr7	77831521	77831980	+	0	NA	intron (NM_001366086, intron 1 of 17)	Charlie3|DNA|hAT-Charlie	-8378	NM_020432	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
156575	chr22	41500571	41500730	+	0	NA	intron (NM_001098, intron 2 of 17)	AluSz6|SINE|Alu	31533	NM_001098	50		NM_001098	ENSG00000100412	ACO2	ACONM|HEL-S-284|ICRD|OCA8|OPA9	aconitase 2	protein-coding
126280	chr2	27198051	27198350	+	0	NA	Intergenic	AluJr|SINE|Alu	14068	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
201192	chr6	143397051	143398700	+	0	NA	Intergenic	Intergenic	44802	NM_001286259	134637		NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase tRNA specific 2	protein-coding
71370	chr14	105495321	105495930	+	0	NA	intron (NM_001134875, intron 5 of 7)	intron (NM_001134875, intron 5 of 7)	4376	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
215548	chr7	158794551	158795050	+	0	NA	intron (NM_020728, intron 3 of 21)	intron (NM_020728, intron 3 of 21)	34709	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
190368	chr5	179742301	179742630	+	0	NA	intron (NM_014757, intron 1 of 4)	AluSx|SINE|Alu	9643	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
77811	chr15	88604971	88605130	+	0	NA	promoter-TSS (NR_120369)	promoter-TSS (NR_120369)	60	NR_120370	101929743		NR_120369	ENSG00000249487	LINC01586	-	long intergenic non-protein coding RNA 1586	ncRNA
6873	chr1	31284251	31284380	+	0	NA	intron (NM_004814, intron 4 of 9)	AluSx|SINE|Alu	12473	NM_004814	9410		NM_004814	ENSG00000060688	SNRNP40	40K|HPRP8BP|PRP8BP|PRPF8BP|SPF38|WDR57	small nuclear ribonucleoprotein U5 subunit 40	protein-coding
148966	chr21	13851501	13851700	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-3236	NR_026755	54055		NR_026755	ENSG00000290541	CYP4F29P	4F-se4[6:7:8]|C21orf15|CYP4F-se4[6:7:8]|CYP4F3LP	cytochrome P450 family 4 subfamily F member 29, pseudogene	pseudo
130402	chr2	85324521	85325650	+	0	NA	intron (NM_006464, intron 2 of 3)	intron (NM_006464, intron 2 of 3)	2904	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
82208	chr16	14989221	14989480	+	0	NA	intron (NM_001285448, intron 2 of 21)	intron (NM_001285448, intron 2 of 21)	14324	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
237275	chrX	111098471	111099450	+	0	NA	intron (NR_136740, intron 2 of 2)	intron (NR_136740, intron 2 of 2)	2769	NM_001324333	5063		NM_002578	ENSG00000077264	PAK3	ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|XLID30|bPAK|beta-PAK	p21 (RAC1) activated kinase 3	protein-coding
147059	chr20	53693001	53694000	+	0	NA	Intergenic	L1MB7|LINE|L1	85146	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
203068	chr6	166274871	166275100	+	0	NA	Intergenic	Intergenic	33407	NM_175922	285800		NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
228638	chr9	106310551	106311050	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-290128	NR_107048	102465995		NR_107048	ENSG00000277889	MIR8081	hsa-mir-8081	microRNA 8081	ncRNA
221435	chr8	123924751	123924850	+	0	NA	intron (NM_001039112, intron 1 of 40)	MER105|DNA|hAT-Charlie	72813	NM_001039112	654463		NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1 like family member 6	protein-coding
236960	chrX	101258551	101258650	+	0	NA	intron (NM_001171184, intron 20 of 21)	intron (NM_001171184, intron 20 of 21)	32734	NM_001168474	54457		NM_024885	ENSG00000102387	TAF7L	CT40|TAF2Q	TATA-box binding protein associated factor 7 like	protein-coding
213894	chr7	142459571	142460030	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-14727	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
150156	chr21	38808651	38808950	+	0	NA	intron (NM_005239, intron 1 of 9)	intron (NM_005239, intron 1 of 9)	2871	NM_005239	2114		NM_005239	ENSG00000157557	ETS2	ETS2IT1	ETS proto-oncogene 2, transcription factor	protein-coding
101942	chr17	74512401	74513100	+	0	NA	Intergenic	MIR3|SINE|MIR	18725	NM_174892	124599		NM_174892	ENSG00000178789	CD300LB	CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5	CD300 molecule like family member b	protein-coding
90772	chr17	2063951	2064050	+	0	NA	TTS (NM_006497)	TTS (NM_006497)	7690	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
24563	chr1	244917251	244917580	+	0	NA	Intergenic	Intergenic	-52454	NM_032328	84288		NM_032328	ENSG00000203666	EFCAB2	CFAP200|DRC8	EF-hand calcium binding domain 2	protein-coding
36786	chr11	9459901	9462580	+	0	NA	promoter-TSS (NR_036539)	promoter-TSS (NR_036539)	228	NM_003442	7702		NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
111826	chr19	4512171	4512330	+	0	NA	exon (NM_001367868, exon 5 of 8)	exon (NM_001367868, exon 5 of 8)	6236	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
108243	chr18	63215951	63216050	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	103769	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
195335	chr6	36620101	36620700	+	0	NA	Intergenic	AluSx4|SINE|Alu	2112	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
166110	chr3	111067721	111068430	+	0	NA	intron (NR_045114, intron 2 of 3)	L2a|LINE|L2	1884	NR_045114	100506555		NR_045114		NECTIN3-AS1	PVRL3-AS1	NECTIN3 antisense RNA 1	ncRNA
231244	chr9	129982901	129983100	+	0	NA	intron (NM_001363755, intron 2 of 15)	intron (NM_001363755, intron 2 of 15)	60189	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
126334	chr2	27366771	27367130	+	0	NA	intron (NM_172195, intron 9 of 11)	intron (NM_172195, intron 9 of 11)	3102	NM_001318965	8890		NM_015636	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta|VWM4	eukaryotic translation initiation factor 2B subunit delta	protein-coding
125866	chr2	24512701	24512980	+	0	NA	intron (NM_001362954, intron 1 of 23)	MIRb|SINE|MIR	20963	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
126001	chr2	25309021	25309700	+	0	NA	intron (NR_135490, intron 2 of 23)	intron (NR_135490, intron 2 of 23)	19361	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
116054	chr19	17217051	17218880	+	0	NA	intron (NM_018467, intron 5 of 7)	AluJb|SINE|Alu	2608	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
175706	chr4	77146721	77146980	+	0	NA	Intergenic	Intergenic	-10357	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
57123	chr12	121198151	121198730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11689	NR_046372	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
156462	chr22	41253221	41253630	+	0	NA	promoter-TSS (NR_106949)	promoter-TSS (NR_106949)	-375	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
108327	chr18	63936201	63936880	+	0	NA	TTS (NM_005024)	TTS (NM_005024)	-12761	NM_001123366	284293		NM_001123366	ENSG00000221887	HMSD	ACC-6|ACC6|C18orf53|HSMD-v	histocompatibility minor serpin domain containing	protein-coding
146792	chr20	50927421	50927680	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-3434	NR_110007	101927631		NR_110007	ENSG00000259456	ADNP-AS1	-	ADNP antisense RNA 1	ncRNA
223529	chr8	144115171	144115430	+	0	NA	intron (NM_001316309, intron 21 of 23)	intron (NM_001316309, intron 21 of 23)	7561	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
238329	chrX	149533951	149534380	+	0	NA	non-coding (NR_027455, exon 6 of 10)	non-coding (NR_027455, exon 6 of 10)	5587	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
158053	chr22	49947521	49948280	+	0	NA	Intergenic	Intergenic	-12872	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
154913	chr22	37194971	37195130	+	0	NA	intron (NM_001365878, intron 2 of 4)	MER41-int|LTR|ERV1	4373	NM_001365878	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
90252	chr17	847101	847300	+	0	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	16911	NM_001205319	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
114993	chr19	14047021	14047700	+	0	NA	intron (NM_004843, intron 8 of 13)	AluSx1|SINE|Alu	10278	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
9489	chr1	51220221	51220680	+	0	NA	intron (NR_147076, intron 1 of 1)	MLT1H1-int|LTR|ERVL-MaLR	14646	NR_147076	105378716		NR_147076	ENSG00000203356	LINC01562	-	long intergenic non-protein coding RNA 1562	ncRNA
34685	chr10	133372471	133374400	+	0	NA	promoter-TSS (NM_004092)	promoter-TSS (NM_004092)	-81	NM_004092	1892		NM_004092	ENSG00000127884	ECHS1	ECHS1D|SCEH|mECH|mECH1	enoyl-CoA hydratase, short chain 1	protein-coding
39939	chr11	62544331	62544800	+	0	NA	intron (NM_024060, intron 1 of 5)	intron (NM_024060, intron 1 of 5)	1099	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
30351	chr10	77832171	77832630	+	0	NA	intron (NM_004747, intron 9 of 31).2	intron (NM_004747, intron 9 of 31).2	94355	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
51855	chr12	53473851	53474250	+	0	NA	intron (NM_031989, intron 14 of 14)	intron (NM_031989, intron 14 of 14)	9582	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
174695	chr4	42399251	42399350	+	0	NA	intron (NM_001080505, intron 1 of 1)	intron (NM_001080505, intron 1 of 1)	1812	NM_001080505	152573		NM_001080505	ENSG00000178343	SHISA3	hShisa3	shisa family member 3	protein-coding
217370	chr8	28060771	28061650	+	0	NA	intron (NM_001010906, intron 7 of 18)	intron (NM_001010906, intron 7 of 18)	22726	NM_001010906	389643		NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC|SLIPGC	nuclear GTPase, germinal center associated	protein-coding
116440	chr19	18029201	18030100	+	0	NA	Intergenic	Intergenic	21480	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
154282	chr22	31660621	31661230	+	0	NA	intron (NM_001326411, intron 1 of 7)	AluSx1|SINE|Alu	1290	NM_001326417	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
36053	chr11	2942371	2942930	+	0	NA	Intergenic	Intergenic	-13230	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
99511	chr17	50221571	50221730	+	0	NA	Intergenic	Intergenic	6956	NR_110806	101927230		NR_110806		TILAM	LINC01969	TGF-beta induced lncRNA activating myofibroblasts	ncRNA
53303	chr12	64542921	64543650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-67210	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
217845	chr8	37735921	37737200	+	0	NA	promoter-TSS (NM_001003790)	promoter-TSS (NM_001003790)	-74	NM_001362880	11160		NM_007175	ENSG00000147475	ERLIN2	C8orf2|Erlin-2|NET32|SPFH2|SPG18|SPG18A|SPG18B	ER lipid raft associated 2	protein-coding
40480	chr11	64238751	64239480	+	0	NA	3' UTR (NM_001243733, exon 7 of 7)	3' UTR (NM_001243733, exon 7 of 7)	-1980	NM_004470	2286		NM_004470	ENSG00000173486	FKBP2	FKBP-13|FKBP13|PPIase	FKBP prolyl isomerase 2	protein-coding
39288	chr11	58564321	58564900	+	0	NA	intron (NM_004811, intron 2 of 8)	intron (NM_004811, intron 2 of 8)	11246	NM_004811	9404		NM_004811	ENSG00000110031	LPXN	LDPL	leupaxin	protein-coding
226163	chr9	63859021	63860350	+	0	NA	promoter-TSS (NR_033907)	promoter-TSS (NR_033907)	-51	NR_033907	642236		NR_033907		FRG1JP	-	FSHD region gene 1 family member J, pseudogene	pseudo
41813	chr11	66982101	66982830	+	0	NA	Intergenic	MIR|SINE|MIR	7161	NM_001136485	254439		NM_001136485	ENSG00000173237	C11orf86	FACI	chromosome 11 open reading frame 86	protein-coding
159125	chr3	12627221	12627880	+	0	NA	intron (NM_001354691, intron 1 of 16)	X7B_LINE|LINE|CR1	35958	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
166069	chr3	108837201	108837400	+	0	NA	intron (NM_016388, intron 2 of 5)	intron (NM_016388, intron 2 of 5)	14514	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
108821	chr18	78979771	78980130	+	0	NA	promoter-TSS (NM_171999)	promoter-TSS (NM_171999)	-325	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
9258	chr1	46241571	46242130	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-5838	NM_001370766	8438		NM_003579	ENSG00000085999	RAD54L	HR54|RAD54A|hHR54|hRAD54	RAD54 like	protein-coding
16115	chr1	153640021	153640750	+	0	NA	intron (NM_001244664, intron 3 of 3)	AluSz6|SINE|Alu	-6024	NM_001024210	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
122822	chr19	50400071	50401180	+	0	NA	intron (NR_046402, intron 3 of 25)	AluJr4|SINE|Alu	1773	NM_001308632	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
90434	chr17	1357171	1358050	+	0	NA	intron (NR_024058, intron 5 of 6)	intron (NR_024058, intron 5 of 6)	42612	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
211874	chr7	111081651	111082050	+	0	NA	intron (NM_032549, intron 3 of 5)	MamRep488|DNA|hAT-Tip100	-9156	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
7641	chr1	35575771	35576230	+	0	NA	intron (NM_178548, intron 3 of 6)	intron (NM_178548, intron 3 of 6)	2686	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
124460	chr19	58518101	58518300	+	0	NA	intron (NM_001316980, intron 1 of 2)	intron (NM_001316980, intron 1 of 2)	1402	NM_001316978	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
12825	chr1	110029151	110029980	+	0	NA	Intergenic	AluY|SINE|Alu	-2012	NM_001270768	85369		NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
20256	chr1	193539771	193540980	+	0	NA	Intergenic	L1MB2|LINE|L1	235630	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
76997	chr15	78353151	78353550	+	0	NA	Intergenic	Intergenic	12997	NM_004378	1381		NM_004378	ENSG00000166426	CRABP1	CRABP|CRABP-I|CRABPI|RBP5	cellular retinoic acid binding protein 1	protein-coding
146547	chr20	49983751	49983850	+	0	NA	intron (NM_005985, intron 1 of 2)	intron (NM_005985, intron 1 of 2)	820	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
136112	chr2	173936671	173937030	+	0	NA	intron (NM_001172712, intron 4 of 6)	intron (NM_001172712, intron 4 of 6)	27030	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
148612	chr21	5154201	5155430	+	0	NA	promoter-TSS (NM_001368238)	promoter-TSS (NM_001368238)	-157	NM_001368238	102724159		NM_001368238	ENSG00000275464	LOC102724159	-	periodic tryptophan protein 2 homolog	protein-coding
59483	chr13	26381771	26382000	+	0	NA	intron (NM_001346501, intron 4 of 11)	intron (NM_001346501, intron 4 of 11)	127756	NM_001318368	1024		NM_001260	ENSG00000132964	CDK8	IDDHBA|K35	cyclin dependent kinase 8	protein-coding
203172	chr6	167111501	167111900	+	0	NA	promoter-TSS (NM_004367)	promoter-TSS (NM_004367)	-107	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
3622	chr1	16374271	16374430	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	7108	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
198042	chr6	90181721	90181980	+	0	NA	intron (NM_021813, intron 4 of 8)	MIR3|SINE|MIR	114993	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
169084	chr3	154120951	154122450	+	0	NA	promoter-TSS (NR_037901)	promoter-TSS (NR_037901)	310	NM_001251963	26084		NM_015595	ENSG00000114790	ARHGEF26	CSGEF|HMFN1864|SGEF	Rho guanine nucleotide exchange factor 26	protein-coding
35727	chr11	1998021	1998850	+	0	NA	promoter-TSS (NR_002196)	promoter-TSS (NR_002196)	-560	NR_002196	283120		NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2	H19 imprinted maternally expressed transcript	ncRNA
145258	chr20	39078351	39078900	+	0	NA	Intergenic	L2a|LINE|L2	116281	NR_033905	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
28613	chr10	58267071	58268500	+	0	NA	5' UTR (NM_152230, exon 1 of 6)	5' UTR (NM_152230, exon 1 of 6)	109	NM_152230	253430		NM_152230	ENSG00000151151	IPMK	-	inositol polyphosphate multikinase	protein-coding
173247	chr4	6964001	6964330	+	0	NA	intron (NM_001330638, intron 1 of 12)	intron (NM_001330638, intron 1 of 12)	9999	NM_001330638	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
2118	chr1	8168171	8168330	+	0	NA	Intergenic	Intergenic	-40422	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
144002	chr20	33137721	33138400	+	0	NA	Intergenic	Intergenic	-23710	NM_001319164	140683		NM_080574	ENSG00000131050	BPIFA2	C20orf70|PSP|SPLUNC2|bA49G10.1	BPI fold containing family A member 2	protein-coding
214143	chr7	144353671	144354430	+	0	NA	intron (NR_126022, intron 1 of 3)	intron (NR_126022, intron 1 of 3)	-1352	NM_005435	7984		NM_005435	ENSG00000050327	ARHGEF5	GEF5|P60|TIM|TIM1	Rho guanine nucleotide exchange factor 5	protein-coding
173323	chr4	7581551	7581650	+	0	NA	intron (NM_020777, intron 3 of 26)	intron (NM_020777, intron 3 of 26)	121572	NR_036238	100422826		NR_036238	ENSG00000266690	MIR4274	-	microRNA 4274	ncRNA
229117	chr9	114403301	114403500	+	0	NA	intron (NM_015404, intron 10 of 11)	intron (NM_015404, intron 10 of 11)	-8995	NM_030767	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
198199	chr6	96923701	96925280	+	0	NA	promoter-TSS (NM_001286251)	promoter-TSS (NM_001286251)	-130	NR_136580	114792		NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
160400	chr3	28206251	28206550	+	0	NA	Intergenic	Intergenic	-35219	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
124791	chr2	7444501	7444900	+	0	NA	intron (NR_038432, intron 4 of 5)	intron (NR_038432, intron 4 of 5)	23439	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
141682	chr2	241804501	241805450	+	0	NA	TTS (NM_022134)	TTS (NM_022134)	-4218	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
87170	chr16	69329371	69332230	+	0	NA	promoter-TSS (NM_022341)	promoter-TSS (NM_022341)	-212	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
146825	chr20	51402151	51403280	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	50262	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
6523	chr1	28555151	28555650	+	0	NA	intron (NM_017846, intron 2 of 8)	intron (NM_017846, intron 2 of 8)	2315	NM_017846	54952		NM_017846	ENSG00000180098	TRNAU1AP	PRO1902|SECP43|TRSPAP1	tRNA selenocysteine 1 associated protein 1	protein-coding
127595	chr2	42827551	42828100	+	0	NA	Intergenic	CpG	-35242	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
214392	chr7	149782971	149783800	+	0	NA	intron (NR_163594, intron 15 of 102)	MIRc|SINE|MIR	7343	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
81582	chr16	10250221	10250300	+	0	NA	Intergenic	Intergenic	-67352	NM_000833	2903		NM_000833	ENSG00000183454	GRIN2A	EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A	glutamate ionotropic receptor NMDA type subunit 2A	protein-coding
5338	chr1	25254271	25254630	+	0	NA	intron (NR_135788, intron 1 of 3)	AluSx3|SINE|Alu	-6931	NR_135143	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
82186	chr16	14937851	14938150	+	0	NA	intron (NR_146231, intron 31 of 38)	intron (NR_146231, intron 31 of 38)	557	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
73244	chr15	41773941	41775800	+	0	NA	intron (NM_014994, intron 1 of 30)	CpG	386	NR_049762	23005		NM_014994	ENSG00000137802	MAPKBP1	JNKBP-1|JNKBP1|NPHP20	mitogen-activated protein kinase binding protein 1	protein-coding
169317	chr3	158845801	158846230	+	0	NA	Intergenic	Intergenic	43961	NM_001167903	64747		NM_022736	ENSG00000118855	MFSD1	Minerva|SMAP4	major facilitator superfamily domain containing 1	protein-coding
199234	chr6	111822421	111823330	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	50196	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
198924	chr6	110295521	110295980	+	0	NA	intron (NM_001123364, intron 4 of 4)	intron (NM_001123364, intron 4 of 4)	34308	NM_001354595	728464		NM_001123364	ENSG00000053328	METTL24	C6orf186	methyltransferase like 24	protein-coding
81318	chr16	4703921	4704330	+	0	NA	intron (NM_133450, intron 8 of 17)	intron (NM_133450, intron 8 of 17)	10407	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
92503	chr17	8885171	8886580	+	0	NA	intron (NM_001142633, intron 14 of 18)	intron (NM_001142633, intron 14 of 18)	-18198	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
173029	chr4	4842901	4843100	+	0	NA	Intergenic	Intergenic	-1437	NR_125765	103695434		NR_125765	ENSG00000273396	LINC01396	-	long intergenic non-protein coding RNA 1396	ncRNA
35915	chr11	2423921	2424250	+	0	NA	Intergenic	Intergenic	-1040	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
91535	chr17	4995571	4995730	+	0	NA	intron (NM_001167985, intron 2 of 7)	AluSp|SINE|Alu	1960	NM_001167986	388324		NM_213726	ENSG00000196388	INCA1	HSD45	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding
66737	chr14	64504501	64505990	+	0	NA	promoter-TSS (NM_001304507)	promoter-TSS (NM_001304507)	-32	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
203404	chr7	102551	103350	+	0	NA	Intergenic	L1MB7|LINE|L1	46488	NR_134325	102723672		NR_134325		LINC03015	-	long intergenic non-protein coding RNA 3015	ncRNA
179719	chr5	78571	78750	+	0	NA	Intergenic	Intergenic	-13508	NM_052909	153478		NM_052909	ENSG00000153404	PLEKHG4B	ARHGEF48	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
179687	chr4	190074021	190074280	+	0	NA	Intergenic	CpG	8921	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
43416	chr11	77411151	77412200	+	0	NA	intron (NM_001376280, intron 1 of 16)	intron (NM_001376280, intron 1 of 16)	296	NM_001376286	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
96848	chr17	41980971	41981130	+	0	NA	intron (NM_003315, intron 12 of 13)	intron (NM_003315, intron 12 of 13)	13253	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
54515	chr12	92108621	92109080	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	32863	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
31330	chr10	92876551	92877050	+	0	NA	intron (NM_001319200, intron 1 of 17)	intron (NM_001319200, intron 1 of 17)	28280	NM_001319195	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
192890	chr6	27498171	27498330	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-25132	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
185344	chr5	126961771	126961930	+	0	NA	intron (NM_178450, intron 1 of 4)	intron (NM_178450, intron 1 of 4)	68708	NM_178450	115123		NM_178450	ENSG00000173926	MARCHF3	MARCH-III|MARCH3|RNF173	membrane associated ring-CH-type finger 3	protein-coding
5940	chr1	26882371	26882730	+	0	NA	intron (NM_018066, intron 4 of 4)	intron (NM_018066, intron 4 of 4)	7733	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
19545	chr1	178784351	178784450	+	0	NA	intron (NM_001286247, intron 2 of 18)	intron (NM_001286247, intron 2 of 18)	59156	NM_152663	55103		NM_018037	ENSG00000116191	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
217527	chr8	29254571	29255130	+	0	NA	intron (NM_015254, intron 1 of 39)	L1MB7|LINE|L1	8220	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
158359	chr22	50465401	50465930	+	0	NA	intron (NM_002972, intron 10 of 40)	intron (NM_002972, intron 10 of 40)	9370	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
190431	chr5	179837671	179837830	+	0	NA	exon (NM_001017987, exon 5 of 5).2	exon (NM_001017987, exon 5 of 5).2	16845	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
199380	chr6	116272951	116273050	+	0	NA	intron (NM_001322937, intron 2 of 6)	intron (NM_001322937, intron 2 of 6)	6930	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
44553	chr11	108170251	108170650	+	0	NA	intron (NM_001321307, intron 13 of 17)	intron (NM_001321307, intron 13 of 17)	48883	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
21103	chr1	203487271	203488180	+	0	NA	3' UTR (NM_201348, exon 3 of 3)	3' UTR (NM_201348, exon 3 of 3)	-6428	NM_014359	26254		NM_014359	ENSG00000188770	OPTC	OPT	opticin	protein-coding
96141	chr17	39667051	39667900	+	0	NA	promoter-TSS (NR_073461)	promoter-TSS (NR_073461)	-544	NR_073461	5409		NM_002686	ENSG00000141744	PNMT	PENT|PNMTase	phenylethanolamine N-methyltransferase	protein-coding
201076	chr6	142773751	142774480	+	0	NA	exon (NM_006734, exon 5 of 10)	exon (NM_006734, exon 5 of 10)	-136226	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
130620	chr2	86018121	86018380	+	0	NA	Intergenic	Intergenic	87636	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
22135	chr1	211934451	211934780	+	0	NA	Intergenic	Intergenic	-100938	NM_001286230	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
30896	chr10	86970801	86971980	+	0	NA	TTS (NM_006829)	TTS (NM_006829)	1054	NM_133447	119385		NM_133447	ENSG00000271880	AGAP11	-	ArfGAP with GTPase domain, ankyrin repeat and PH domain 11	ncRNA
205153	chr7	7195051	7195350	+	0	NA	intron (NM_020156, intron 1 of 3)	L1PB1|LINE|L1	12656	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
166363	chr3	113002451	113003350	+	0	NA	TTS (NM_014170)	TTS (NM_014170)	11916	NM_014170	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
177489	chr4	113979371	113979750	+	0	NA	promoter-TSS (NM_024590)	promoter-TSS (NM_024590)	87	NM_001354210	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
230126	chr9	127719951	127720860	+	0	NA	intron (NM_144965, intron 6 of 13)	intron (NM_144965, intron 6 of 13)	4326	NM_144965	158248		NM_144965	ENSG00000167094	TTC16	-	tetratricopeptide repeat domain 16	protein-coding
143337	chr20	25750471	25751700	+	0	NA	promoter-TSS (NR_135006)	promoter-TSS (NR_135006)	-123	NR_135006	105372582		NR_135006		LOC105372582	-	uncharacterized LOC105372582	ncRNA
207825	chr7	50324151	50324850	+	0	NA	intron (NM_006060, intron 2 of 7)	intron (NM_006060, intron 2 of 7)	5452	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
113409	chr19	9582071	9582430	+	0	NA	intron (NM_001308269, intron 1 of 4)	LTR7C|LTR|ERV1	2254	NM_001008727	7675		NM_001008727	ENSG00000197961	ZNF121	D19S204|ZHC32|ZNF20	zinc finger protein 121	protein-coding
37569	chr11	19059901	19060100	+	0	NA	promoter-TSS (NM_001303615)	promoter-TSS (NM_001303615)	17	NM_001303615	117194		NM_054030	ENSG00000183695	MRGPRX2	MGRG3|MRGX2	MAS related GPR family member X2	protein-coding
49196	chr12	15788571	15790110	+	0	NA	promoter-TSS (NM_004447)	promoter-TSS (NM_004447)	48	NM_004447	2059		NM_004447	ENSG00000151491	EPS8	DFNB102	EGFR pathway substrate 8, signaling adaptor	protein-coding
106420	chr18	13537301	13537500	+	0	NA	intron (NM_001378099, intron 4 of 6)	MER1B|DNA|hAT-Charlie	-73714	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
81485	chr16	8938321	8938580	+	0	NA	intron (NM_003470, intron 1 of 30)	AluY|SINE|Alu	-1811	NM_001286457	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
122926	chr19	50666021	50666700	+	0	NA	exon (NM_016148, exon 23 of 24)	exon (NM_016148, exon 23 of 24)	16915	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
156224	chr22	40344301	40344650	+	0	NA	Intergenic	Intergenic	-2025	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
35845	chr11	2310701	2311100	+	0	NA	intron (NM_139022, intron 4 of 9)	intron (NM_139022, intron 4 of 9)	-7760	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
183637	chr5	80240401	80241030	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluJb|SINE|Alu	15333	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
50349	chr12	47177221	47177480	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	-10462	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
91254	chr17	3964101	3966080	+	0	NA	promoter-TSS (NM_005173)	promoter-TSS (NM_005173)	-626	NM_174956	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
72049	chr15	28788821	28790050	+	0	NA	promoter-TSS (NR_037599)	promoter-TSS (NR_037599)	-399	NR_037599	646278		NR_037599		PDCD6IPP2	-	PDCD6IP pseudogene 2	pseudo
91432	chr17	4738221	4739200	+	0	NA	intron (NM_022059, intron 2 of 5)	intron (NM_022059, intron 2 of 5)	-1123	NM_001136046	84225		NM_032265	ENSG00000141497	ZMYND15	SPGF14	zinc finger MYND-type containing 15	protein-coding
12747	chr1	109615821	109616630	+	0	NA	intron (NM_001379232, intron 1 of 8)	intron (NM_001379232, intron 1 of 8)	-3141	NM_005272	2780		NM_005272	ENSG00000134183	GNAT2	ACHM4|GNATC|HG1D	G protein subunit alpha transducin 2	protein-coding
22634	chr1	223711901	223713280	+	0	NA	promoter-TSS (NM_001748)	promoter-TSS (NM_001748)	51	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
179552	chr4	185142841	185144100	+	0	NA	exon (NM_001151, exon 1 of 4)	exon (NM_001151, exon 1 of 4)	204	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
195014	chr6	35451601	35453380	+	0	NA	5' UTR (NM_021922, exon 1 of 10)	5' UTR (NM_021922, exon 1 of 10)	152	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
68643	chr14	89944021	89944480	+	0	NA	intron (NM_145231, intron 3 of 5)	THE1B|LTR|ERVL-MaLR	10286	NM_001284268	90141		NM_145231	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
126015	chr2	25331701	25332050	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	-3154	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
37738	chr11	31805721	31806280	+	0	NA	promoter-TSS (NM_001368906)	promoter-TSS (NM_001368906)	1	NM_001368906	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
118841	chr19	38632751	38633150	+	0	NA	intron (NM_013234, intron 6 of 7).2	L2a|LINE|L2	13762	NM_013234	27335		NM_013234	ENSG00000178982	EIF3K	ARG134|EIF3-p28|EIF3S12|HSPC029|M9|MSTP001|PLAC-24|PLAC24|PRO1474|PTD001	eukaryotic translation initiation factor 3 subunit K	protein-coding
13123	chr1	111639621	111640080	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-19452	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
92921	chr17	16585471	16585850	+	0	NA	Intergenic	Intergenic	-16448	NM_001346169	57336		NM_020653	ENSG00000141040	ZNF287	ZKSCAN13|ZSCAN45	zinc finger protein 287	protein-coding
227268	chr9	89369801	89370800	+	0	NA	intron (NR_163887, intron 13 of 15)	(TG)n|Simple_repeat|Simple_repeat	51449	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
145644	chr20	44891821	44892700	+	0	NA	intron (NM_003404, intron 2 of 6)	intron (NM_003404, intron 2 of 6)	6555	NM_003404	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
174372	chr4	38893671	38893830	+	0	NA	intron (NM_138389, intron 4 of 14)	MamRTE1|LINE|RTE-BovB	25718	NR_030300	693159		NR_030300	ENSG00000207944	MIR574	MIR574-3p|MIRN574|hsa-mir-574|mir-574	microRNA 574	ncRNA
7337	chr1	32731221	32731880	+	0	NA	Intergenic	AluYh3a3|SINE|Alu	-10280	NM_020888	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
194788	chr6	34197951	34198250	+	0	NA	Intergenic	L2b|LINE|L2	-38773	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
47672	chr12	6339351	6339650	+	0	NA	intron (NR_144351, intron 1 of 8)	L2b|LINE|L2	2576	NM_001346091	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
19442	chr1	174743771	174744200	+	0	NA	intron (NM_001366447, intron 17 of 20)	intron (NM_001366447, intron 17 of 20)	42990	NM_001366452	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
209915	chr7	92403821	92404430	+	0	NA	Intergenic	Intergenic	33189	NR_145992	105375396		NM_001317905	ENSG00000293397	TMBIM7P	-	transmembrane BAX inhibitor motif containing 7, pseudogene	pseudo
56736	chr12	120129471	120130000	+	0	NA	intron (NM_006836, intron 56 of 57)	L2b|LINE|L2	-12982	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
89853	chr16	89602251	89603330	+	0	NA	Intergenic	Intergenic	-10518	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
36761	chr11	9386871	9387230	+	0	NA	intron (NM_006391, intron 1 of 24)	intron (NM_006391, intron 1 of 24)	2398	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
225110	chr9	33454301	33454980	+	0	NA	Intergenic	AluSg|SINE|Alu	-7047	NM_001318144	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
172538	chr4	2362471	2362830	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	2164	NM_001172660	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
87710	chr16	74986971	74987330	+	0	NA	Intergenic	AluJr|SINE|Alu	-2004	NM_001324172	79726		NM_030581	ENSG00000103091	WDR59	CDW12|FP977|p90-120	WD repeat domain 59	protein-coding
137988	chr2	201234301	201235050	+	0	NA	intron (NM_033355, intron 2 of 9)	AluSx1|SINE|Alu	1212	NM_033358	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
97399	chr17	43372351	43372730	+	0	NA	intron (NR_027412, intron 4 of 5)	LTR13A|LTR|ERVK	16358	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
164568	chr3	64008271	64008430	+	0	NA	intron (NR_038286, intron 1 of 2)	intron (NR_038286, intron 1 of 2)	4328	NR_038286	100507062		NR_038286	ENSG00000239653	PSMD6-AS2	-	PSMD6 antisense RNA 2	ncRNA
54412	chr12	90153021	90153280	+	0	NA	Intergenic	L1PA10|LINE|L1	-140168	NR_135018	105369893		NR_135018	ENSG00000258183	LINC02392	-	long intergenic non-protein coding RNA 2392	ncRNA
125616	chr2	19130801	19131000	+	0	NA	Intergenic	Intergenic	-103929	NR_135287	400945		NR_135287	ENSG00000236204	LINC01376	-	long intergenic non-protein coding RNA 1376	ncRNA
13788	chr1	117363401	117364750	+	0	NA	Intergenic	Intergenic	-3374	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
213138	chr7	131400571	131400930	+	0	NA	intron (NM_001145354, intron 7 of 18)	intron (NM_001145354, intron 7 of 18)	72874	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
145743	chr20	45093771	45094330	+	0	NA	3' UTR (NM_001322799, exon 4 of 4)	3' UTR (NM_001322799, exon 4 of 4)	7077	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
120508	chr19	44808071	44808230	+	0	NA	promoter-TSS (NM_005581)	promoter-TSS (NM_005581)	-909	NM_001013257	4059		NM_005581	ENSG00000187244	BCAM	AU|B-CAM|CD239|F8/G253|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
63933	chr14	22040171	22040950	+	0	NA	Intergenic	Intergenic	-369543	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
21436	chr1	205430301	205431020	+	0	NA	Intergenic	CpG	-8604	NM_001199050	93273		NM_001001552	ENSG00000186007	LEMD1	CT50|LEMP-1	LEM domain containing 1	protein-coding
237524	chrX	120294451	120295100	+	0	NA	intron (NM_001104544, intron 2 of 8)	intron (NM_001104544, intron 2 of 8)	16686	NM_001104544	55026		NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
132776	chr2	109858571	109858930	+	0	NA	Intergenic	Intergenic	-39682	NR_027145	100271835		NR_027144	ENSG00000284337	LIMS3-LOC440895	-	LIMS3-LOC440895 readthrough	ncRNA
204123	chr7	2311921	2312180	+	0	NA	intron (NM_013321, intron 1 of 10)	intron (NM_013321, intron 1 of 10)	2391	NM_013321	29886		NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
185271	chr5	124747401	124747800	+	0	NA	promoter-TSS (NM_001385620)	promoter-TSS (NM_001385620)	-961	NM_020747	57507		NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
96918	chr17	42149521	42149780	+	0	NA	intron (NM_201434, intron 1 of 6)	Charlie16a|DNA|hAT-Charlie	5339	NM_201434	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
182554	chr5	65803571	65804180	+	0	NA	intron (NM_020726, intron 9 of 12)	MER52A|LTR|ERV1	81670	NM_020726	57486		NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
231877	chr9	132990871	132991230	+	0	NA	exon (NM_004188, exon 11 of 11)	exon (NM_004188, exon 11 of 11)	11774	NM_001377305	8328		NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding
79473	chr16	743551	744450	+	0	NA	Intergenic	Intergenic	-3003	NM_001304799	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
11010	chr1	84692601	84693780	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2722	NM_001166295	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
22353	chr1	214628021	214628480	+	0	NA	intron (NM_016343, intron 7 of 19)	intron (NM_016343, intron 7 of 19)	25055	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
23833	chr1	234602701	234603130	+	0	NA	Intergenic	Intergenic	6610	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
101879	chr17	74301171	74301780	+	0	NA	intron (NR_148379, intron 7 of 12)	intron (NR_148379, intron 7 of 12)	-24751	NM_153209	124602		NM_153209	ENSG00000196169	KIF19	KIF19A	kinesin family member 19	protein-coding
125134	chr2	9914671	9914830	+	0	NA	intron (NM_005680, intron 12 of 14)	intron (NM_005680, intron 12 of 14)	-36943	NM_198182	29841		NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
80584	chr16	2882151	2884130	+	0	NA	promoter-TSS (NM_001142500)	promoter-TSS (NM_001142500)	-55	NM_001142500	114984		NM_138439	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
196135	chr6	42417021	42418120	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	34481	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
165310	chr3	87226771	87228230	+	0	NA	5' UTR (NM_014043, exon 1 of 6)	5' UTR (NM_014043, exon 1 of 6)	191	NM_001244644	25978		NM_014043	ENSG00000083937	CHMP2B	ALS17|CHMP2.5|DMT1|FTDALS7|VPS2-2|VPS2B	charged multivesicular body protein 2B	protein-coding
141557	chr2	241506151	241506450	+	0	NA	intron (NM_001282305, intron 1 of 10)	intron (NM_001282305, intron 1 of 10)	2045	NM_001271978	10494		NM_006374	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
192642	chr6	26160671	26162280	+	0	NA	intron (NM_138720, intron 1 of 1)	L1MEd|LINE|L1	3353	NM_021063	3017		NM_021063	ENSG00000158373	H2BC5	H2B.1B|H2B/a|H2B/b|H2B/g|H2B/h|H2B/k|H2B/l|H2BFA|H2BFB|H2BFG|H2BFH|H2BFK|H2BFL|HIRIP2|HIST1H2BC|HIST1H2BD|HIST1H2BE|HIST1H2BF|HIST1H2BG|HIST1H2BI|dJ221C16.6	H2B clustered histone 5	protein-coding
164596	chr3	66222171	66222550	+	0	NA	intron (NM_001164796, intron 1 of 8).2	AluY|SINE|Alu	1357	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
181382	chr5	40658351	40658450	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-21515	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
152754	chr22	21740001	21740200	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4306	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
8243	chr1	39764051	39764350	+	0	NA	TTS (NM_001195007)	TTS (NM_001195007)	7148	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
77258	chr15	81315401	81316280	+	0	NA	intron (NR_135013, intron 4 of 4)	intron (NR_135013, intron 4 of 4)	8301	NR_135013	80765		NM_030574	ENSG00000172345	STARD5	-	StAR related lipid transfer domain containing 5	protein-coding
79325	chr16	569451	570500	+	0	NA	promoter-TSS (NM_148920)	promoter-TSS (NM_148920)	7	NM_004204	9091		NM_004204	ENSG00000007541	PIGQ	DEE77|EIEE77|GPI1|GPIBD19|MCAHS4|c407A10.1	phosphatidylinositol glycan anchor biosynthesis class Q	protein-coding
73793	chr15	48177101	48177800	+	0	NA	promoter-TSS (NM_001370415)	promoter-TSS (NM_001370415)	845	NR_125408	50804		NM_016132	ENSG00000104177	MYEF2	HsT18564|MEF-2|MST156|MSTP156|myEF-2	myelin expression factor 2	protein-coding
151628	chr22	16352651	16352830	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	240070	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
142012	chr20	1631721	1632700	+	0	NA	intron (NM_080816, intron 2 of 3)	L1MC4|LINE|L1	-1298	NR_110090	101929010		NR_110090	ENSG00000237914	SIRPG-AS1	-	SIRPG antisense RNA 1	ncRNA
26699	chr10	22643771	22644750	+	0	NA	intron (NM_005028, intron 1 of 9)	L2a|LINE|L2	69848	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
158425	chr22	50546801	50547000	+	0	NA	exon (NM_138433, exon 1 of 1)	exon (NM_138433, exon 1 of 1)	1001	NM_138433	113730		NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
41943	chr11	67308101	67308680	+	0	NA	intron (NM_017857, intron 9 of 13)	intron (NM_017857, intron 9 of 13)	4860	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
202592	chr6	158704151	158705930	+	0	NA	intron (NM_001318745, intron 3 of 14)	intron (NM_001318745, intron 3 of 14)	41637	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
233391	chr9	137547571	137547930	+	0	NA	intron (NM_001098537, intron 1 of 34)	intron (NM_001098537, intron 1 of 34)	2652	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
228591	chr9	104969501	104969700	+	0	NA	Intergenic	AluJr|SINE|Alu	-41445	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
163058	chr3	49937171	49937630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2750	NM_001349192	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
48740	chr12	10718301	10718930	+	0	NA	intron (NM_003651, intron 2 of 9)	intron (NM_003651, intron 2 of 9)	4708	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
5701	chr1	26373051	26374180	+	0	NA	promoter-TSS (NM_001114759)	promoter-TSS (NM_001114759)	-821	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
94447	chr17	29243851	29244150	+	0	NA	Intergenic	Intergenic	-2859	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
169805	chr3	177041921	177042480	+	0	NA	intron (NM_001374327, intron 9 of 14)	intron (NM_001374327, intron 9 of 14)	154278	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
61528	chr13	60009501	60009700	+	0	NA	intron (NM_001258370, intron 2 of 15)	intron (NM_001258370, intron 2 of 15)	-3118	NR_109838	100874195		NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
188312	chr5	151202401	151203070	+	0	NA	intron (NM_015621, intron 2 of 8)	intron (NM_015621, intron 2 of 8)	-9399	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
169661	chr3	171524251	171524350	+	0	NA	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	-63892	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
228417	chr9	99259351	99260030	+	0	NA	Intergenic	Intergenic	37408	NM_006808	10952		NM_006808	ENSG00000106803	SEC61B	-	SEC61 translocon subunit beta	protein-coding
199499	chr6	118667801	118668330	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	-16474	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
46376	chr11	126265621	126266530	+	0	NA	exon (NM_003139, exon 8 of 14)	exon (NM_003139, exon 8 of 14)	2820	NM_003139	6734		NM_003139	ENSG00000182934	SRPRA	DP|SRPR|Sralpha	SRP receptor subunit alpha	protein-coding
137549	chr2	197229671	197230700	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	32194	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
175569	chr4	75642851	75643150	+	0	NA	3' UTR (NM_203504, exon 11 of 11)	3' UTR (NM_203504, exon 11 of 11)	-12472	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
207547	chr7	44842801	44843100	+	0	NA	intron (NM_201436, intron 1 of 3)	AluSc|SINE|Alu	5137	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
152653	chr22	21565621	21565880	+	0	NA	intron (NM_001256355, intron 1 of 3)	AluSx1|SINE|Alu	-1797	NM_001256356	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
195387	chr6	36752151	36754180	+	0	NA	intron (NM_001376889, intron 14 of 21)	MIR|SINE|MIR	4235	NM_001376891	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
34184	chr10	128130771	128130930	+	0	NA	Intergenic	Intergenic	-4427	NM_001145966	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
111450	chr19	3820771	3821130	+	0	NA	intron (NM_015174, intron 10 of 18)	intron (NM_015174, intron 10 of 18)	-19151	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
47225	chr12	946021	947380	+	0	NA	intron (NR_123713, intron 1 of 13)	Tigger17a|DNA|TcMar-Tigger	2994	NM_001297422	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
49358	chr12	22327371	22327530	+	0	NA	intron (NM_001304450, intron 1 of 3)	MER115|DNA|hAT-Tip100	7264	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
177390	chr4	112214551	112214980	+	0	NA	Intergenic	Intergenic	-17022	NM_018569	55435		NM_018569	ENSG00000138660	AP1AR	2C18|C4orf16|GBAR|PRO0971|gamma-BAR	adaptor related protein complex 1 associated regulatory protein	protein-coding
214675	chr7	150957201	150958630	+	0	NA	intron (NM_172056, intron 4 of 8)	intron (NM_172056, intron 4 of 8)	-2086	NM_172057	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
16614	chr1	155075601	155075800	+	0	NA	Intergenic	Intergenic	-3137	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
221487	chr8	124492701	124493000	+	0	NA	intron (NM_032026, intron 11 of 11)	FLAM_A|SINE|Alu	15726	NR_106903	102466200		NR_106903	ENSG00000284087	MIR6844	hsa-mir-6844	microRNA 6844	ncRNA
175680	chr4	77009301	77009700	+	0	NA	intron (NM_018243, intron 3 of 9)	L2|LINE|L2	59748	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
152903	chr22	22748171	22748930	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-74226	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
227296	chr9	89409921	89410280	+	0	NA	intron (NM_001371201, intron 2 of 18)	G-rich|Low_complexity|Low_complexity	69790	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
40281	chr11	63843371	63843930	+	0	NA	intron (NM_004954, intron 1 of 16)	AluSx1|SINE|Alu	4540	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
144228	chr20	34389771	34390230	+	0	NA	intron (NM_031483, intron 2 of 24)	AluSx1|SINE|Alu	26727	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
171894	chr4	792071	793550	+	0	NA	intron (NM_006651, intron 2 of 3)	intron (NM_006651, intron 2 of 3)	-10962	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
16775	chr1	155490371	155490930	+	0	NA	intron (NM_018489, intron 2 of 27)	(CA)n|Simple_repeat|Simple_repeat	57470	NR_034180	645682		NR_034180	ENSG00000237872	POU5F1P4	OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1	POU class 5 homeobox 1 pseudogene 4	pseudo
197697	chr6	85666571	85666930	+	0	NA	Intergenic	AluSz|SINE|Alu	10618	NR_002743	26799		NR_002743		SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
233436	chr9	137615571	137615950	+	0	NA	TTS (NM_152285)	TTS (NM_152285)	2769	NR_122036	85026		NM_032937	ENSG00000203993	ARRDC1-AS1	C9orf37	ARRDC1 antisense RNA 1	ncRNA
222038	chr8	130207351	130208280	+	0	NA	intron (NM_001362924, intron 5 of 30)	intron (NM_001362924, intron 5 of 30)	88718	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
173874	chr4	24545721	24545980	+	0	NA	intron (NM_001358, intron 6 of 13)	intron (NM_001358, intron 6 of 13)	-25560	NR_030299	693158		NR_030299	ENSG00000207697	MIR573	MIRN573|hsa-mir-573|mir-573	microRNA 573	ncRNA
93007	chr17	17205101	17207500	+	0	NA	promoter-TSS (NM_178836)	promoter-TSS (NM_178836)	33	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
82868	chr16	21532871	21533230	+	0	NA	Intergenic	Intergenic	-12606	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
77941	chr15	89333271	89333450	+	0	NA	exon (NM_001126131, exon 2 of 23)	exon (NM_001126131, exon 2 of 23)	1464	NM_001126131	5428		NM_002693	ENSG00000140521	POLG	MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE	DNA polymerase gamma, catalytic subunit	protein-coding
62544	chr13	99617421	99617730	+	0	NA	intron (NM_206808, intron 1 of 8)	intron (NM_206808, intron 1 of 8)	10885	NR_104592	171425		NM_206808	ENSG00000125246	CLYBL	CLB	citramalyl-CoA lyase	protein-coding
90112	chr16	90106281	90107150	+	0	NA	intron (NR_126161, intron 2 of 3)	intron (NR_126161, intron 2 of 3)	4451	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
28533	chr10	50503551	50504050	+	0	NA	intron (NM_147156, intron 3 of 10)	intron (NM_147156, intron 3 of 10)	120156	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
15649	chr1	150770651	150771550	+	0	NA	Intergenic	Intergenic	-5322	NM_001199739	1520		NM_004079	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
11641	chr1	91769121	91769780	+	0	NA	intron (NR_036634, intron 4 of 17)	intron (NR_036634, intron 4 of 17)	116701	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
129609	chr2	70103101	70104090	+	0	NA	Intergenic	AluSx1|SINE|Alu	16118	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
14676	chr1	145823401	145825150	+	0	NA	promoter-TSS (NM_001303456)	promoter-TSS (NM_001303456)	75	NM_006468	10623		NM_006468	ENSG00000186141	POLR3C	C82|RPC3|RPC62	RNA polymerase III subunit C	protein-coding
117075	chr19	19066901	19067100	+	0	NA	intron (NM_178526, intron 1 of 7)	AluJr|SINE|Alu	3006	NM_178526	284439		NM_178526	ENSG00000181035	SLC25A42	MECREN	solute carrier family 25 member 42	protein-coding
97029	chr17	42309971	42310400	+	0	NA	intron (NM_001288719, intron 17 of 17)	intron (NM_001288719, intron 17 of 17)	22129	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
132749	chr2	109615871	109616030	+	0	NA	exon (NM_023016, exon 1 of 1)	exon (NM_023016, exon 1 of 1)	1586	NM_023016	65124		NM_023016	ENSG00000198142	SOWAHC	ANKRD57|C2orf26	sosondowah ankyrin repeat domain family member C	protein-coding
202747	chr6	159032301	159032500	+	0	NA	Intergenic	Intergenic	9953	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
106952	chr18	31150171	31150330	+	0	NA	intron (NM_024421, intron 5 of 15)	(CAC)n|Simple_repeat|Simple_repeat	12606	NM_024421	1823		NM_004948	ENSG00000134765	DSC1	CDHF1|DG2/DG3	desmocollin 1	protein-coding
212358	chr7	127599801	127600200	+	0	NA	intron (NM_020369, intron 5 of 6)	intron (NM_020369, intron 5 of 6)	6264	NM_020369	29999		NM_020369	ENSG00000106328	FSCN3	-	fascin actin-bundling protein 3	protein-coding
195881	chr6	41639371	41639730	+	0	NA	intron (NM_001300805, intron 2 of 3)	intron (NM_001300805, intron 2 of 3)	1082	NM_005586	4188		NM_005586	ENSG00000112559	MDFI	I-MF|I-mfa	MyoD family inhibitor	protein-coding
62052	chr13	91348201	91349330	+	0	NA	intron (NR_027350, intron 1 of 1)	CpG	945	NR_027350	407975		NM_213723	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA
16255	chr1	153970601	153971150	+	0	NA	intron (NR_045658, intron 3 of 8)	AluSc|SINE|Alu	2625	NM_001255981	148327		NM_130898	ENSG00000143578	CREB3L4	AIBZIP|ATCE1|CREB3|CREB4|JAL|hJAL	cAMP responsive element binding protein 3 like 4	protein-coding
193121	chr6	28979671	28980150	+	0	NA	Intergenic	LTR9A1|LTR|ERV1	-4839	NR_135289	414761		NR_135289		HCG15	HCG16	HLA complex group 15	ncRNA
176883	chr4	102759271	102759430	+	0	NA	intron (NM_005908, intron 1 of 16)	intron (NM_005908, intron 1 of 16)	1618	NM_005908	4126		NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
82161	chr16	14908251	14908850	+	0	NA	TTS (NR_049832)	TTS (NR_049832)	833	NR_037442	100500910		NR_037442	ENSG00000263918	MIR3670-1	MIR3670|hsa-mir-3670-1	microRNA 3670-1	ncRNA
127407	chr2	42098971	42099800	+	0	NA	Intergenic	Intergenic	51364	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
236254	chrX	65755751	65756100	+	0	NA	Intergenic	L1M4|LINE|L1	88271	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
135312	chr2	160326671	160327030	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	-54955	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
111044	chr19	3097951	3098330	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	3778	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
129959	chr2	73948571	73949130	+	0	NA	intron (NM_080918, intron 3 of 4)	intron (NM_080918, intron 3 of 4)	21970	NM_080918	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
44314	chr11	102367201	102367800	+	0	NA	intron (NM_001256166, intron 5 of 8)	intron (NM_001256166, intron 5 of 8)	20126	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
3285	chr1	15272351	15272830	+	0	NA	intron (NM_052929, intron 3 of 30)	intron (NM_052929, intron 3 of 30)	25365	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
3333	chr1	15427271	15427900	+	0	NA	intron (NM_024329, intron 3 of 3)	intron (NM_024329, intron 3 of 3)	-10858	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
106602	chr18	22263221	22263550	+	0	NA	Intergenic	L1MEi|LINE|L1	93796	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
37820	chr11	33063301	33063830	+	0	NA	intron (NM_001145541, intron 7 of 9)	intron (NM_001145541, intron 7 of 9)	-12585	NR_015451	283267		NR_015451	ENSG00000280798	LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	ncRNA
225363	chr9	34702101	34702630	+	0	NA	Intergenic	Intergenic	7771	NM_002989	6366		NM_002989	ENSG00000137077	CCL21	6Ckine|CKb9|ECL|SCYA21|SLC|TCA4	C-C motif chemokine ligand 21	protein-coding
20116	chr1	192516371	192517230	+	0	NA	Intergenic	Intergenic	-58973	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
157554	chr22	45671421	45672830	+	0	NA	exon (NM_001167621, exon 1 of 11)	exon (NM_001167621, exon 1 of 11)	291	NM_013236	25814		NM_013236	ENSG00000130638	ATXN10	ATX10|E46L|HUMEEP|SCA10	ataxin 10	protein-coding
77778	chr15	85927721	85928180	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	102315	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
136057	chr2	172693801	172694000	+	0	NA	Intergenic	LTR52|LTR|ERVL	-41945	NM_001375872	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
206059	chr7	27160021	27160280	+	0	NA	Intergenic	CpG	-3475	NM_006896	3204		NM_006896	ENSG00000122592	HOXA7	ANTP|HOX1|HOX1.1|HOX1A	homeobox A7	protein-coding
211323	chr7	104209271	104209430	+	0	NA	Intergenic	L2b|LINE|L2	-1303	NM_181747	5001		NM_002553	ENSG00000164815	ORC5	ORC5L|ORC5P|ORC5T|PPP1R117	origin recognition complex subunit 5	protein-coding
98105	chr17	45612321	45612780	+	0	NA	Intergenic	AluSx|SINE|Alu	-7779	NR_138259	147081		NM_152466	ENSG00000293460	LINC02210	C17orf69|CRHR1-IT1	long intergenic non-protein coding RNA 2210	ncRNA
6476	chr1	28340121	28340580	+	0	NA	Intergenic	L1M5|LINE|L1	11310	NM_017638	54797		NM_017638	ENSG00000130772	MED18	SRB5|p28b	mediator complex subunit 18	protein-coding
231371	chr9	130678721	130679180	+	0	NA	intron (NM_021619, intron 4 of 4)	MIR3|SINE|MIR	14356	NM_021619	59335		NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding
194294	chr6	32691921	32692300	+	0	NA	Intergenic	Intergenic	-25453	NM_002123	3119		NM_002123	ENSG00000179344	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
1738	chr1	5979971	5980130	+	0	NA	intron (NR_111987, intron 2 of 32)	MER74A|LTR|ERVL	12375	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
211247	chr7	102658801	102659300	+	0	NA	intron (NM_001166339, intron 6 of 8).2	AluSz6|SINE|Alu	8725	NM_001031618	441273		NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1|SPDYB2L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
51380	chr12	51863471	51864630	+	0	NA	Intergenic	CpG	-15332	NM_001384995	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
191463	chr6	10886821	10887130	+	0	NA	promoter-TSS (NM_001040274)	promoter-TSS (NM_001040274)	-77	NM_001040274	221711		NM_194299	ENSG00000153157	SYCP2L	C6orf177|NO145|dJ62D2.1	synaptonemal complex protein 2 like	protein-coding
229052	chr9	114338501	114339550	+	0	NA	intron (NM_001317952, intron 20 of 20)	intron (NM_001317952, intron 20 of 20)	9156	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
233897	chrX	1598001	1598880	+	0	NA	intron (NM_004043, intron 1 of 9)	CpG	2985	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
103899	chr17	79805251	79805430	+	0	NA	Intergenic	Intergenic	-8263	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
99631	chr17	50570001	50570830	+	0	NA	intron (NM_198376, intron 4 of 34)	intron (NM_198376, intron 4 of 34)	-8307	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
81296	chr16	4682921	4683550	+	0	NA	non-coding (NR_102267, exon 13 of 15)	non-coding (NR_102267, exon 13 of 15)	-10458	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
207792	chr7	50261271	50262530	+	0	NA	Intergenic	Intergenic	-42164	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
219332	chr8	70216071	70216230	+	0	NA	intron (NM_001321713, intron 3 of 21)	L1ME4b|LINE|L1	-144898	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
29924	chr10	73359801	73360200	+	0	NA	Intergenic	L1MC4|LINE|L1	-1136	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
98498	chr17	47323451	47325400	+	0	NA	promoter-TSS (NR_110881)	promoter-TSS (NR_110881)	470	NM_152347	124989		NM_152347	ENSG00000178852	EFCAB13	C17orf57	EF-hand calcium binding domain 13	protein-coding
2229	chr1	8857921	8858700	+	0	NA	Intergenic	Intergenic	8280	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
200448	chr6	135054171	135055750	+	0	NA	promoter-TSS (NM_001145158)	promoter-TSS (NM_001145158)	-138	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
603	chr1	1301101	1301300	+	0	NA	intron (NM_030649, intron 5 of 23)	AluJb|SINE|Alu	3612	NR_145806	109623456		NR_145806		SNORD167	-	small nucleolar RNA, C/D box 167	snoRNA
45240	chr11	117976921	117977180	+	0	NA	Intergenic	Intergenic	-9344	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
59238	chr13	23871701	23871930	+	0	NA	intron (NM_005932, intron 5 of 18)	intron (NM_005932, intron 5 of 18)	-17053	NM_001014442								
129731	chr2	70907201	70907650	+	0	NA	intron (NM_012476, intron 1 of 2)	intron (NM_012476, intron 1 of 2)	6849	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
58164	chr12	124950221	124950680	+	0	NA	exon (NM_032656, exon 23 of 27)	exon (NM_032656, exon 23 of 27)	34903	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
70507	chr14	102234801	102235700	+	0	NA	intron (NR_148552, intron 6 of 9)	HERVFH21-int|LTR|ERV1	176	NM_001353832	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
40806	chr11	64911201	64911600	+	0	NA	intron (NM_015104, intron 9 of 40)	intron (NM_015104, intron 9 of 40)	5809	NM_001367972	23130		NM_015104	ENSG00000110046	ATG2A	BLTP4A	autophagy related 2A	protein-coding
42363	chr11	68667051	68667230	+	0	NA	Intergenic	Intergenic	-17404	NM_015973	51083		NM_015973	ENSG00000069482	GAL	ETL8|GAL-GMAP|GALN|GLNN|GMAP	galanin and GMAP prepropeptide	protein-coding
177738	chr4	122457701	122457900	+	0	NA	Intergenic	MIRb|SINE|MIR	-1075	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
206353	chr7	30445671	30446430	+	0	NA	intron (NR_149002, intron 9 of 14)	intron (NR_149002, intron 9 of 14)	32734	NM_006092	10392		NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1|hNod1	nucleotide binding oligomerization domain containing 1	protein-coding
211029	chr7	102418471	102419200	+	0	NA	intron (NR_038967, intron 8 of 8)	L1MC3|LINE|L1	-12980	NR_031669	100313829		NR_031669	ENSG00000221510	MIR548O	MIRN548O	microRNA 548o	ncRNA
110177	chr19	1663971	1664130	+	0	NA	Intergenic	Intergenic	-11435	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
225069	chr9	33264001	33266000	+	0	NA	promoter-TSS (NM_004323)	promoter-TSS (NM_004323)	-49	NM_016410	51510		NM_016410	ENSG00000086065	CHMP5	C9orf83|CGI-34|HSPC177|PNAS-2|SNF7DC2|Vps60	charged multivesicular body protein 5	protein-coding
23180	chr1	226870301	226871380	+	0	NA	intron (NM_012486, intron 1 of 12)	CpG	224	NM_000447	5664		NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2	protein-coding
105984	chr18	5890601	5891200	+	0	NA	exon (NM_001080209, exon 3 of 3)	exon (NM_001080209, exon 3 of 3)	5054	NM_001080209	645369		NM_001080209	ENSG00000206432	TMEM200C	TTMA	transmembrane protein 200C	protein-coding
231908	chr9	133091921	133092380	+	0	NA	Intergenic	AluSq|SINE|Alu	9611	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
69824	chr14	99222251	99222900	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	49622	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
165163	chr3	72337521	72337930	+	0	NA	Intergenic	Intergenic	108898	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
54635	chr12	92905501	92905780	+	0	NA	intron (NM_003566, intron 1 of 28)	intron (NM_003566, intron 1 of 28)	23655	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
59989	chr13	32389971	32390680	+	0	NA	intron (NM_000059, intron 24 of 26)	AluJr|SINE|Alu	37805	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
29677	chr10	72044401	72044980	+	0	NA	Intergenic	Intergenic	43861	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
187754	chr5	144177521	144177830	+	0	NA	intron (NM_020768, intron 2 of 3)	MLT1C|LTR|ERVL-MaLR	6802	NM_020768	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
235282	chrX	41920001	41920400	+	0	NA	intron (NM_001126055, intron 1 of 24)	intron (NM_001126055, intron 1 of 24)	2834	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
205528	chr7	18666121	18666400	+	0	NA	exon (NM_001321877, exon 11 of 25)	exon (NM_001321877, exon 11 of 25)	156990	NM_001204147	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
97197	chr17	42690371	42690530	+	0	NA	intron (NM_003632, intron 12 of 23)	AluSx|SINE|Alu	7919	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
64420	chr14	24182251	24182780	+	0	NA	intron (NR_051979, intron 24 of 29)	intron (NR_051979, intron 24 of 29)	6301	NM_024658	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
232724	chr9	136615651	136615950	+	0	NA	non-coding (NR_135288, exon 1 of 3)	non-coding (NR_135288, exon 1 of 3)	1381	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
137576	chr2	197263001	197264580	+	0	NA	intron (NR_046837, intron 5 of 5)	MLT1J|LTR|ERVL-MaLR	38729	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
186144	chr5	134164051	134164730	+	0	NA	intron (NM_170679, intron 3 of 5)	L2a|LINE|L2	12560	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
235913	chrX	53080151	53080250	+	0	NA	3' UTR (NM_018969, exon 2 of 2)	3' UTR (NM_018969, exon 2 of 2)	-2167	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
238455	chrX	152921251	152921550	+	0	NA	intron (NM_001178110, intron 9 of 20)	L2b|LINE|L2	3535	NM_001178113	7739		NM_007150	ENSG00000147394	ZNF185	SCELL	zinc finger protein 185 with LIM domain	protein-coding
231658	chr9	131660851	131661150	+	0	NA	intron (NM_001377935, intron 1 of 26)	L1ME3A|LINE|L1	-9597	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
111922	chr19	4722601	4724400	+	0	NA	promoter-TSS (NM_001384628)	promoter-TSS (NM_001384628)	-337	NM_001384613	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
91774	chr17	6995851	6996150	+	0	NA	promoter-TSS (NM_000697)	promoter-TSS (NM_000697)	-49	NM_000697	239		NM_000697	ENSG00000108839	ALOX12	12-LOX|12S-LOX|LOG12	arachidonate 12-lipoxygenase, 12S type	protein-coding
125962	chr2	25229751	25229850	+	0	NA	non-coding (NR_135490, exon 24 of 24)	non-coding (NR_135490, exon 24 of 24)	22331	NM_001320893	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
85947	chr16	57188801	57189000	+	0	NA	intron (NM_001305163, intron 1 of 14)	intron (NM_001305163, intron 1 of 14)	2571	NM_001305164	89970		NM_133368	ENSG00000159579	RSPRY1	SEMDFA	ring finger and SPRY domain containing 1	protein-coding
91615	chr17	5382871	5383430	+	0	NA	exon (NM_001291581, exon 17 of 17)	exon (NM_001291581, exon 17 of 17)	-36491	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
130745	chr2	86803251	86803550	+	0	NA	intron (NR_168478, intron 1 of 7)	L1MA9|LINE|L1	4642	NR_168479	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
65408	chr14	50820271	50820750	+	0	NA	intron (NM_020921, intron 3 of 30)	intron (NM_020921, intron 3 of 30)	-1287	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
17303	chr1	156447451	156448180	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-18267	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
29368	chr10	69716971	69717330	+	0	NA	Intergenic	Intergenic	-84756	NM_080800	1305		NM_005203	ENSG00000197467	COL13A1	CMS19|COLXIIIA1	collagen type XIII alpha 1 chain	protein-coding
79095	chr16	184921	185380	+	0	NA	Intergenic	Intergenic	4691	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
222974	chr8	143208171	143208630	+	0	NA	Intergenic	Intergenic	-4818	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
143385	chr20	28603971	28604130	+	0	NA	Intergenic	MIR|SINE|MIR	-1385	NR_132315	100289097		NR_132315	ENSG00000282826	FRG1CP	-	FSHD region gene 1 family member C, pseudogene	pseudo
187903	chr5	148836371	148836530	+	0	NA	Intergenic	Intergenic	9839	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
65160	chr14	49497721	49498050	+	0	NA	Intergenic	Intergenic	88495	NM_001032	6235		NM_001032	ENSG00000213741	RPS29	DBA13|S29|uS14	ribosomal protein S29	protein-coding
50147	chr12	45735371	45735930	+	0	NA	intron (NM_152641, intron 3 of 20)	intron (NM_152641, intron 3 of 20)	5941	NM_001347839	196528		NM_152641	ENSG00000189079	ARID2	BAF200|CSS6|SMARCF3|ZIPZAP|p200	AT-rich interaction domain 2	protein-coding
148862	chr21	8426501	8427130	+	0	NA	Intergenic	AluJb|SINE|Alu	-5715	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
204770	chr7	5606571	5606930	+	0	NA	TTS (NM_003088)	TTS (NM_003088)	13934	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
138271	chr2	203547551	203547650	+	0	NA	Intergenic	L2|LINE|L2	-12299	NM_213589	65059		NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
118347	chr19	35637951	35638050	+	0	NA	TTS (NM_001319113)	TTS (NM_001319113)	-3745	NM_001300974	2116		NM_014209	ENSG00000105672	ETV2	ER71|ETSRP71	ETS variant transcription factor 2	protein-coding
179635	chr4	186190621	186192450	+	0	NA	promoter-TSS (NR_046264)	promoter-TSS (NR_046264)	-32	NM_207352	285440		NM_207352	ENSG00000145476	CYP4V2	BCD|CYP4AH1	cytochrome P450 family 4 subfamily V member 2	protein-coding
232623	chr9	136446271	136446630	+	0	NA	intron (NM_014866, intron 28 of 31)	(T)n|Simple_repeat|Simple_repeat	-6605	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
108758	chr18	77122521	77122850	+	0	NA	intron (NM_001025100, intron 1 of 3)	AluSx1|SINE|Alu	10098	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
119933	chr19	41838371	41838530	+	0	NA	intron (NM_001291419, intron 3 of 4)	intron (NM_001291419, intron 3 of 4)	5277	NM_001291419	147719		NM_173506	ENSG00000273111	LYPD4	SMR	LY6/PLAUR domain containing 4	protein-coding
79060	chr16	139921	140850	+	0	NA	Intergenic	L1MB8|LINE|L1	-1687	NM_001243249	8131		NM_012075	ENSG00000103148	NPRL3	C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11	NPR3 like, GATOR1 complex subunit	protein-coding
178091	chr4	140242951	140243450	+	0	NA	Intergenic	Intergenic	-14108	NM_032547	60592		NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding
212671	chr7	129609271	129609680	+	0	NA	Intergenic	MIR|SINE|MIR	-2245	NM_001293163	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
187653	chr5	143066971	143067130	+	0	NA	intron (NR_146198, intron 17 of 22)	(CCTCCC)n|Simple_repeat|Simple_repeat	-125450	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
39433	chr11	60911151	60911500	+	0	NA	Intergenic	Intergenic	-2833	NM_024092	79073		NM_024092	ENSG00000110108	TMEM109	SND3|hSND3	transmembrane protein 109	protein-coding
65195	chr14	49636821	49637080	+	0	NA	Intergenic	L2|LINE|L2	-1706	NM_018139	55172		NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
118223	chr19	35178671	35179030	+	0	NA	Intergenic	Intergenic	24115	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
101846	chr17	74012151	74012750	+	0	NA	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-183913	NR_027146	283982		NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
227029	chr9	83958721	83959050	+	0	NA	Intergenic	AluJb|SINE|Alu	-1899	NM_001317997	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
167123	chr3	127679551	127680230	+	0	NA	intron (NM_172027, intron 10 of 11)	intron (NM_172027, intron 10 of 11)	6938	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
110924	chr19	2781551	2782200	+	0	NA	intron (NM_003021, intron 1 of 11)	AluSx|SINE|Alu	1398	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
16038	chr1	152353251	152353350	+	0	NA	exon (NM_001014342, exon 3 of 3)	exon (NM_001014342, exon 3 of 3)	6706	NM_001014342	388698		NM_001014342	ENSG00000143520	FLG2	IFPS|PSS6	filaggrin 2	protein-coding
7598	chr1	35196301	35196700	+	0	NA	Intergenic	AluSx4|SINE|Alu	-3355	NM_005066	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
176259	chr4	86999101	86999300	+	0	NA	intron (NM_001166693, intron 2 of 20)	intron (NM_001166693, intron 2 of 20)	-7788	NM_001313959	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
112195	chr19	5675801	5676030	+	0	NA	Intergenic	Intergenic	4323	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
21574	chr1	206470051	206471600	+	0	NA	intron (NM_001193322, intron 1 of 20)	intron (NM_001193322, intron 1 of 20)	349	NM_001193322	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
152115	chr22	19908151	19908450	+	0	NA	intron (NR_147957, intron 7 of 16)	intron (NR_147957, intron 7 of 16)	24253	NM_001352301	10587		NM_006440	ENSG00000184470	TXNRD2	GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2|TXNR2	thioredoxin reductase 2	protein-coding
158537	chr3	3798451	3798900	+	0	NA	promoter-TSS (NM_001324188)	promoter-TSS (NM_001324188)	-756	NM_001324188	57633		NM_020873	ENSG00000175928	LRRN1	FIGLER3|NLRR-1|NLRR1	leucine rich repeat neuronal 1	protein-coding
144363	chr20	35084351	35084650	+	0	NA	intron (NM_199368, intron 1 of 18)	intron (NM_199368, intron 1 of 18)	8307	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
53086	chr12	57739401	57740080	+	0	NA	intron (NM_014770, intron 1 of 17)	intron (NM_014770, intron 1 of 17)	-1494	NM_001122772	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
101391	chr17	67362121	67362580	+	0	NA	intron (NM_001316341, intron 2 of 12)	intron (NM_001316341, intron 2 of 12)	4227	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
129812	chr2	71545621	71545900	+	0	NA	intron (NM_001130981, intron 17 of 55)	intron (NM_001130981, intron 17 of 55)	79061	NM_001130987	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
8071	chr1	38995221	38995480	+	0	NA	intron (NM_001136275, intron 1 of 3)	intron (NM_001136275, intron 1 of 3)	4074	NM_024595	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
55680	chr12	107462801	107463300	+	0	NA	intron (NM_001347944, intron 1 of 14)	(ATG)n|Simple_repeat|Simple_repeat	-117824	NM_001017523	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
120621	chr19	45043021	45043280	+	0	NA	intron (NM_001278439, intron 2 of 19)	Tigger4b|DNA|TcMar-Tigger	4105	NR_103529	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
194972	chr6	35336621	35337300	+	0	NA	Intergenic	L1PA6|LINE|L1	-5598	NM_001171818	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
46866	chr11	133943571	133943730	+	0	NA	intron (NM_001277285, intron 3 of 19)	intron (NM_001277285, intron 3 of 19)	13318	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
149208	chr21	25386001	25386280	+	0	NA	non-coding (NR_024027, exon 5 of 5)	non-coding (NR_024027, exon 5 of 5)	45561	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
76567	chr15	75258551	75259050	+	0	NA	intron (NM_001164404, intron 1 of 17)	intron (NM_001164404, intron 1 of 17)	242	NM_001164404	653641		NM_001164404	ENSG00000167195	GOLGA6C	-	golgin A6 family member C	protein-coding
207568	chr7	44913921	44914180	+	0	NA	Intergenic	Intergenic	-28520	NM_033224	5814		NM_033224	ENSG00000146676	PURB	PURBETA	purine rich element binding protein B	protein-coding
90951	chr17	2652001	2652400	+	0	NA	intron (NM_000430, intron 2 of 10)	AluY|SINE|Alu	40719	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
99339	chr17	49853321	49853780	+	0	NA	Intergenic	Intergenic	-5533	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
236817	chrX	79170301	79170980	+	0	NA	5' UTR (NM_032553, exon 3 of 3)	5' UTR (NM_032553, exon 3 of 3)	25952	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
42001	chr11	67396451	67396550	+	0	NA	intron (NM_004584, intron 9 of 10)	intron (NM_004584, intron 9 of 10)	3195	NM_001243224	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
181701	chr5	50636201	50636730	+	0	NA	Intergenic	AluJr|SINE|Alu	-29466	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
53273	chr12	63825971	63826230	+	0	NA	Intergenic	Intergenic	2437	NR_162118	113218505		NR_162118		MIR10527	-	microRNA 10527	ncRNA
143559	chr20	31609521	31609880	+	0	NA	Intergenic	MIRc|SINE|MIR	2514	NR_036161	100422904		NR_036161	ENSG00000264395	MIR3193	-	microRNA 3193	ncRNA
106819	chr18	23996651	23997130	+	0	NA	intron (NR_110796, intron 5 of 5)	AluSc8|SINE|Alu	4003	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
210588	chr7	100370901	100371180	+	0	NA	Intergenic	AluJo|SINE|Alu	-2447	NM_178273	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
137772	chr2	199457621	199457930	+	0	NA	non-coding (NR_134967, exon 1 of 5)	non-coding (NR_134967, exon 1 of 5)	164	NM_001172509	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
233879	chrX	1570201	1571480	+	0	NA	Intergenic	Intergenic	-20764	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
103877	chr17	79780501	79781430	+	0	NA	intron (NM_032647, intron 3 of 3)	intron (NM_032647, intron 3 of 3)	2787	NM_032647	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
33478	chr10	119074201	119075180	+	0	NA	intron (NM_003750, intron 1 of 21)	AluSp|SINE|Alu	6127	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
222127	chr8	131952071	131952430	+	0	NA	intron (NM_001323558, intron 5 of 23)	MIR|SINE|MIR	35477	NM_001323557	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
170725	chr3	188151951	188152050	+	0	NA	non-coding (NR_036497, exon 1 of 1)	non-coding (NR_036497, exon 1 of 1)	-1021	NM_001375455	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
159088	chr3	12363771	12363930	+	0	NA	intron (NM_001374265, intron 1 of 5)	intron (NM_001374265, intron 1 of 5)	12433	NM_001354668	5468		NM_005037	ENSG00000132170	PPARG	CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARG5|PPARgamma	peroxisome proliferator activated receptor gamma	protein-coding
127922	chr2	46362021	46362280	+	0	NA	intron (NM_001430, intron 6 of 15)	intron (NM_001430, intron 6 of 15)	32017	NR_146999	105374582		NR_146999	ENSG00000228100	LINC01820	-	long intergenic non-protein coding RNA 1820	ncRNA
223489	chr8	144060371	144061180	+	0	NA	promoter-TSS (NM_017570)	promoter-TSS (NM_017570)	-83	NM_017570	26873		NM_017570	ENSG00000178814	OPLAH	5-Opase|OPLA|OPLAHD	5-oxoprolinase, ATP-hydrolysing	protein-coding
92174	chr17	7712421	7713080	+	0	NA	Intergenic	Intergenic	-4994	NM_020877	146754		NM_020877	ENSG00000183914	DNAH2	DNAHC2|DNHD3|SPGF45	dynein axonemal heavy chain 2	protein-coding
11349	chr1	89608001	89609750	+	0	NA	Intergenic	Intergenic	24019	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
15341	chr1	149923451	149923750	+	0	NA	exon (NM_005850, exon 6 of 6)	exon (NM_005850, exon 6 of 6)	4203	NM_005850	10262		NM_005850	ENSG00000143368	SF3B4	AFD1|Hsh49|SAP49|SF3b49	splicing factor 3b subunit 4	protein-coding
162570	chr3	48661251	48662100	+	0	NA	exon (NM_001407, exon 1 of 35)	exon (NM_001407, exon 1 of 35)	1211	NM_001407	1951		NM_001407	ENSG00000008300	CELSR3	ADGRC3|CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1	cadherin EGF LAG seven-pass G-type receptor 3	protein-coding
183930	chr5	87403121	87403850	+	0	NA	intron (NR_157069, intron 4 of 8)	intron (NR_157069, intron 4 of 8)	9419	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
39798	chr11	61961051	61961230	+	0	NA	intron (NR_134580, intron 9 of 10)	AluSq|SINE|Alu	5905	NM_001363591	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
47136	chr12	745551	745650	+	0	NA	Intergenic	AluY|SINE|Alu	-6979	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
212945	chr7	130940521	130940880	+	0	NA	Intergenic	Intergenic	27236	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
60392	chr13	40953101	40953800	+	0	NA	intron (NM_001370329, intron 4 of 9)	MLT1B|LTR|ERVL-MaLR	28832	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
17061	chr1	156103251	156103550	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	-11311	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
100208	chr17	59157471	59157650	+	0	NA	intron (NM_018304, intron 1 of 9)	AluSz6|SINE|Alu	1814	NM_018304	55771		NM_018304	ENSG00000068489	PRR11	-	proline rich 11	protein-coding
164825	chr3	70990121	70990950	+	0	NA	intron (NR_146143, intron 12 of 19)	intron (NR_146143, intron 12 of 19)	74389	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
118431	chr19	35819851	35820200	+	0	NA	Intergenic	L2|LINE|L2	-7180	NM_001378292	58510		NM_021232	ENSG00000250799	PRODH2	HSPOX1|HYPDH	proline dehydrogenase 2	protein-coding
68684	chr14	90381851	90383800	+	0	NA	Intergenic	CpG	-13677	NM_001363669	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
94051	chr17	27350901	27351100	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	56886	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
78926	chr15	101245301	101245750	+	0	NA	intron (NM_014918, intron 1 of 2)	intron (NM_014918, intron 1 of 2)	6523	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
54910	chr12	96100001	96100300	+	0	NA	Intergenic	Intergenic	-56630	NM_001256643	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
121075	chr19	45882051	45882150	+	0	NA	Intergenic	Intergenic	4041	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
34143	chr10	128052701	128052900	+	0	NA	intron (NM_001323357, intron 3 of 16)	intron (NM_001323357, intron 3 of 16)	5188	NM_001323357	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
85538	chr16	53091951	53092050	+	0	NA	intron (NR_168114, intron 2 of 2)	intron (NR_168114, intron 2 of 2)	37009	NR_168120	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
162243	chr3	47245871	47246030	+	0	NA	intron (NM_001134878, intron 14 of 21)	intron (NM_001134878, intron 14 of 21)	4659	NR_145712	109617025		NR_145712		SNORD13J	-	small nucleolar RNA, C/D box 13J	snoRNA
49013	chr12	14240221	14240750	+	0	NA	Intergenic	Intergenic	-125147	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
20323	chr1	197619171	197619350	+	0	NA	intron (NR_125340, intron 9 of 19)	intron (NR_125340, intron 9 of 19)	156220	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
75903	chr15	70022571	70023830	+	0	NA	Intergenic	MER66B|LTR|ERV1	56268	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
172729	chr4	2818051	2819000	+	0	NA	promoter-TSS (NM_003023)	promoter-TSS (NM_003023)	-289	NM_003023	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
162327	chr3	47522051	47522750	+	0	NA	Intergenic	Intergenic	-8688	NM_001031703	54859		NM_017713	ENSG00000163832	ELP6	C3orf75|TMEM103	elongator acetyltransferase complex subunit 6	protein-coding
20475	chr1	198622871	198623230	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-15918	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
134461	chr2	143205001	143205750	+	0	NA	intron (NM_018460, intron 3 of 13)	L2a|LINE|L2	75956	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
95315	chr17	35585051	35585350	+	0	NA	Intergenic	AluY|SINE|Alu	-2122	NM_001282	163		NM_001282	ENSG00000006125	AP2B1	ADTB2|AP105B|AP2-BETA|CLAPB1	adaptor related protein complex 2 subunit beta 1	protein-coding
213276	chr7	134671151	134671450	+	0	NA	intron (NM_001293085, intron 3 of 3)	intron (NM_001293085, intron 3 of 3)	24447	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
26021	chr10	12333471	12334050	+	0	NA	Intergenic	Intergenic	-15787	NM_020397	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
19940	chr1	184750571	184750730	+	0	NA	intron (NM_001319960, intron 1 of 20)	AluSx1|SINE|Alu	4208	NM_001319960	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
166002	chr3	108133351	108133450	+	0	NA	intron (NR_110028, intron 1 of 2)	intron (NR_110028, intron 1 of 2)	7579	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
59055	chr13	20708901	20709100	+	0	NA	intron (NM_001385224, intron 1 of 1)	L1ME4b|LINE|L1	5301	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
210949	chr7	101315251	101315550	+	0	NA	intron (NM_001287526, intron 2 of 2)	intron (NM_001287526, intron 2 of 2)	6412	NM_001287525	64792		NM_022777	ENSG00000128581	IFT22	CFAP9|FAP9|RABL5	intraflagellar transport 22	protein-coding
164547	chr3	63967551	63969200	+	0	NA	intron (NM_001128149, intron 1 of 8)	intron (NM_001128149, intron 1 of 8)	581	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
175987	chr4	81606951	81607250	+	0	NA	Intergenic	Intergenic	-135193	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
127044	chr2	37201471	37202480	+	0	NA	3' UTR (NM_001322373, exon 6 of 6)	3' UTR (NM_001322373, exon 6 of 6)	5479	NR_136316	100505876		NM_001322373	ENSG00000218739	CEBPZOS	CEBPZ-AS1	CEBPZ opposite strand	protein-coding
208291	chr7	66050001	66050200	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-25719	NM_001024943	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
181639	chr5	49657621	49657900	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	783528	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
134790	chr2	147845221	147845980	+	0	NA	intron (NM_001278579, intron 2 of 11)	intron (NM_001278579, intron 2 of 11)	571	NM_001616	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
222292	chr8	133468871	133469400	+	0	NA	intron (NM_173344, intron 5 of 9)	intron (NM_173344, intron 5 of 9)	102752	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
7461	chr1	33087871	33088880	+	0	NA	intron (NM_001376724, intron 3 of 9)	L2b|LINE|L2	6197	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
7386	chr1	32895821	32896080	+	0	NA	exon (NM_033504, exon 3 of 6)	exon (NM_033504, exon 3 of 6)	5439	NM_001329722	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
209103	chr7	74887401	74888000	+	0	NA	non-coding (NR_040584, exon 3 of 8)	non-coding (NR_040584, exon 3 of 8)	2912	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
197990	chr6	90065421	90065680	+	0	NA	intron (NM_021813, intron 5 of 8)	MER58A|DNA|hAT-Charlie	171081	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
85769	chr16	56924521	56925130	+	0	NA	Intergenic	Intergenic	-7317	NM_001010989	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
81761	chr16	11497271	11498250	+	0	NA	intron (NM_001370704, intron 10 of 66)	intron (NM_001370704, intron 10 of 66)	29487	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
111407	chr19	3770071	3770230	+	0	NA	3' UTR (NM_001319074, exon 3 of 3)	3' UTR (NM_001319074, exon 3 of 3)	2078	NM_001319074	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
227247	chr9	89343701	89344100	+	0	NA	intron (NM_001282690, intron 10 of 16)	L1PREC2|LINE|L1	25049	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
67317	chr14	69621071	69621230	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	9554	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
37075	chr11	12676051	12676450	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	1829	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
147016	chr20	53585921	53587430	+	0	NA	intron (NM_006526, intron 1 of 5)	intron (NM_006526, intron 1 of 5)	7164	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
50010	chr12	42359921	42360700	+	0	NA	intron (NM_201515, intron 5 of 10)	L1MC4|LINE|L1	28512	NM_001364834	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
144069	chr20	33681071	33681230	+	0	NA	intron (NM_005225, intron 1 of 6)	AluJo|SINE|Alu	5235	NM_005225	1869		NM_005225	ENSG00000101412	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
197646	chr6	84220821	84221080	+	0	NA	intron (NM_001286206, intron 2 of 26)	intron (NM_001286206, intron 2 of 26)	6693	NM_014895	22832		NM_014895	ENSG00000135315	CEP162	C6orf84|KIAA1009|QN1	centrosomal protein 162	protein-coding
80543	chr16	2782571	2782730	+	0	NA	Intergenic	MIRb|SINE|MIR	4910	NM_001385462	260429		NM_152891	ENSG00000103355	PRSS33	EOS	serine protease 33	protein-coding
22018	chr1	210233271	210233780	+	0	NA	intron (NM_019605, intron 1 of 3)	CpG	360	NR_024337	574036		NR_024337		SERTAD4-AS1	C1orf133	SERTAD4 antisense RNA 1	ncRNA
150119	chr21	37474921	37475600	+	0	NA	intron (NM_130436, intron 2 of 10)	intron (NM_130436, intron 2 of 10)	54961	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
110199	chr19	1718521	1719300	+	0	NA	Intergenic	CpG	-34596	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
41984	chr11	67378901	67379100	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-4823	NM_001166212	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
151501	chr21	46369771	46370150	+	0	NA	intron (NM_006031, intron 15 of 46)	intron (NM_006031, intron 15 of 46)	45293	NM_001315529	5116		NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
98733	chr17	48024701	48025660	+	0	NA	TTS (NM_016429)	TTS (NM_016429)	-7702	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
227323	chr9	89442521	89443130	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	37065	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
36485	chr11	6270001	6270380	+	0	NA	exon (NM_001318029, exon 2 of 4)	exon (NM_001318029, exon 2 of 4)	10352	NM_001363552	887		NM_176875	ENSG00000110148	CCKBR	CCK-2R|CCK-B|CCK2R|GASR	cholecystokinin B receptor	protein-coding
141500	chr2	241123721	241124380	+	0	NA	exon (NM_001252122, exon 11 of 18)	exon (NM_001252122, exon 11 of 18)	-21718	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
35510	chr11	1544671	1545500	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	27186	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
110042	chr19	1466721	1467850	+	0	NA	exon (NM_001351273, exon 14 of 14)	exon (NM_001351273, exon 14 of 14)	11930	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
91930	chr17	7327601	7327800	+	0	NA	exon (NM_001005408, exon 2 of 29)	exon (NM_001005408, exon 2 of 29)	1635	NM_032442	84461		NM_032442	ENSG00000215041	NEURL4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding
72310	chr15	31215451	31217450	+	0	NA	intron (NR_135834, intron 1 of 1)	intron (NR_135834, intron 1 of 1)	429	NR_135834	102725022		NR_135834		LINC02352	-	long intergenic non-protein coding RNA 2352	ncRNA
188737	chr5	157537821	157538080	+	0	NA	exon (NM_033274, exon 4 of 23)	exon (NM_033274, exon 4 of 23)	37825	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
207596	chr7	44968951	44969050	+	0	NA	intron (NM_033054, intron 12 of 21)	MER5A1|DNA|hAT-Charlie	10015	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
103658	chr17	78776071	78776700	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSz|SINE|Alu	5823	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
144110	chr20	33858451	33859830	+	0	NA	Intergenic	Intergenic	47792	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
43927	chr11	90283151	90283250	+	0	NA	intron (NR_104190, intron 1 of 6)	intron (NR_104190, intron 1 of 6)	31968	NR_104190	101929222		NR_104190	ENSG00000261645	DISC1FP1	Boymaw	DISC1 fusion partner 1	ncRNA
164792	chr3	69324401	69324730	+	0	NA	intron (NM_015123, intron 1 of 22)	MER20|DNA|hAT-Charlie	61523	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
29171	chr10	68870571	68870800	+	0	NA	intron (NM_001130160, intron 1 of 2)	MLT1E2|LTR|ERVL-MaLR	-30630	NM_024045	79009		NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
180230	chr5	1569921	1570180	+	0	NA	Intergenic	CpG	24481	NR_003263	728609		NR_003263	ENSG00000291055	SDHAP3	SDHACL|SDHAL	SDHA pseudogene 3	pseudo
47909	chr12	6761801	6762280	+	0	NA	Intergenic	AluJb|SINE|Alu	-4323	NM_002824	5763		NM_002824	ENSG00000159335	PTMS	ParaT	parathymosin	protein-coding
150060	chr21	37389601	37390250	+	0	NA	intron (NM_001347723, intron 1 of 10)	AluJo|SINE|Alu	22368	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
226961	chr9	79884201	79885080	+	0	NA	intron (NR_121213, intron 1 of 2)	intron (NR_121213, intron 1 of 2)	60110	NR_121213	101927477		NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
118368	chr19	35711951	35712050	+	0	NA	intron (NM_014383, intron 1 of 6)	AluSx1|SINE|Alu	-6003	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
97691	chr17	44311951	44312250	+	0	NA	intron (NM_001144825, intron 1 of 10)	intron (NM_001144825, intron 1 of 10)	3499	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
202796	chr6	159111871	159112230	+	0	NA	Intergenic	Intergenic	-57350	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
10380	chr1	64964821	64966990	+	0	NA	intron (NM_001321853, intron 2 of 26)	CpG	644	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
187115	chr5	140408021	140408280	+	0	NA	intron (NM_020690, intron 1 of 35)	AluSx1|SINE|Alu	6317	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
136000	chr2	172339351	172339880	+	0	NA	Intergenic	HAL1|LINE|L1	-87721	NM_001316306	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
26856	chr10	24884901	24885500	+	0	NA	intron (NM_020200, intron 3 of 8)	MER115|DNA|hAT-Tip100	67406	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
7856	chr1	36373371	36374200	+	0	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	12139	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
103908	chr17	79814351	79814700	+	0	NA	Intergenic	CpG	-8927	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
140061	chr2	231405371	231406330	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	10140	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
213027	chr7	131031481	131032630	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	74975	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
60022	chr13	32540271	32540630	+	0	NA	Intergenic	L1MC4|LINE|L1	-1565	NM_033111	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
170892	chr3	193614271	193614680	+	0	NA	intron (NM_001354664, intron 2 of 29)	MIR|SINE|MIR	12857	NR_046634	100873941		NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA
224743	chr9	21804271	21804430	+	0	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	1714	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
67119	chr14	68495171	68495730	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	133337	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
3082	chr1	12190071	12190230	+	0	NA	intron (NM_001066, intron 2 of 9)	intron (NM_001066, intron 2 of 9)	-1563	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
114191	chr19	11406221	11406750	+	0	NA	exon (NM_001035223, exon 7 of 19)	exon (NM_001035223, exon 7 of 19)	12829	NM_001161616	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
29878	chr10	72702921	72703500	+	0	NA	intron (NM_001270680, intron 1 of 7)	MIR|SINE|MIR	10591	NM_001270680	90550		NM_138357	ENSG00000156026	MCU	C10orf42|CCDC109A|HsMCU	mitochondrial calcium uniporter	protein-coding
154111	chr22	31091871	31092030	+	0	NA	intron (NR_168474, intron 11 of 19)	MIR3|SINE|MIR	6954	NM_001207018	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
73438	chr15	43187371	43188400	+	0	NA	intron (NM_012142, intron 3 of 10)	intron (NM_012142, intron 3 of 10)	2482	NR_027513	23582		NM_012142	ENSG00000166946	CCNDBP1	DIP1|GCIP|HHM	cyclin D1 binding protein 1	protein-coding
216664	chr8	22137051	22138050	+	0	NA	TTS (NM_001316965)	TTS (NM_001316965)	4357	NM_001316964	80346		NM_025232	ENSG00000168476	REEP4	C8orf20|PP432|Yip2c	receptor accessory protein 4	protein-coding
14132	chr1	121000901	121001600	+	0	NA	intron (NR_135813, intron 2 of 2)	intron (NR_135813, intron 2 of 2)	37602	NR_160532	105369199		NR_160532		LOC105369199	-	NBPF member 6 pseudogene	pseudo
219717	chr8	81007601	81007800	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	104368	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
83220	chr16	23801401	23802000	+	0	NA	Intergenic	(TTCCC)n|Simple_repeat|Simple_repeat	-34283	NM_212535	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
156409	chr22	41188471	41188630	+	0	NA	intron (NR_110514, intron 2 of 2)	AluJr|SINE|Alu	8951	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
162821	chr3	49160301	49160600	+	0	NA	Intergenic	AluYa5|SINE|Alu	5881	NM_022903	64925		NM_022903	ENSG00000177352	CCDC71	-	coiled-coil domain containing 71	protein-coding
219689	chr8	80649651	80649750	+	0	NA	intron (NM_001367783, intron 7 of 8)	L1PA4|LINE|L1	163474	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
235105	chrX	40543771	40544300	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-36935	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
127450	chr2	42192021	42192300	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-21929	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
12969	chr1	110890271	110891350	+	0	NA	intron (NM_001040033, intron 2 of 8)	L2c|LINE|L2	17662	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
233846	chrX	1510251	1510880	+	0	NA	intron (NM_178129, intron 1 of 1)	MER49|LTR|ERV1	26620	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
113224	chr19	8475501	8475700	+	0	NA	intron (NM_031203, intron 13 of 16)	intron (NM_031203, intron 13 of 16)	27040	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
184813	chr5	111248621	111249080	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	24466	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
226855	chr9	78021701	78021900	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	10011	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
62583	chr13	99989571	99990000	+	0	NA	Intergenic	CpG	8001	NM_007129	7546		NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
214941	chr7	151754101	151754600	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	-18036	NM_001304527	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
50641	chr12	48719201	48719400	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-2593	NM_001277842	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
180384	chr5	7887051	7887430	+	0	NA	intron (NR_157171, intron 7 of 13)	intron (NR_157171, intron 7 of 13)	18092	NR_157174	4552		NM_002454	ENSG00000124275	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
177529	chr4	118634151	118634450	+	0	NA	non-coding (NR_109983, exon 10 of 10)	non-coding (NR_109983, exon 10 of 10)	4371	NR_103825	729218		NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
219560	chr8	78542701	78543100	+	0	NA	intron (NR_125389, intron 2 of 2)	intron (NR_125389, intron 2 of 2)	15603	NR_125389	101927003		NR_125389	ENSG00000254266	PKIA-AS1	-	PKIA antisense RNA 1	ncRNA
211296	chr7	103278851	103279280	+	0	NA	intron (NR_003561, intron 2 of 20)	intron (NR_003561, intron 2 of 20)	1247	NR_003561	349152		NM_182634	ENSG00000291139	DPY19L2P2	-	DPY19L2 pseudogene 2	pseudo
109061	chr18	79900801	79901000	+	0	NA	Intergenic	Intergenic	37232	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
64893	chr14	35390721	35391550	+	0	NA	Intergenic	MIRb|SINE|MIR	13614	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
42873	chr11	73311801	73312600	+	0	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	-2839	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
216763	chr8	22486021	22486780	+	0	NA	intron (NM_005605, intron 3 of 13)	MLT1L|LTR|ERVL-MaLR	45322	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
64922	chr14	35533221	35534730	+	0	NA	promoter-TSS (NM_032594)	promoter-TSS (NM_032594)	-189	NM_032594	84684		NM_032594	ENSG00000168348	INSM2	IA-6|IA6|mlt1	INSM transcriptional repressor 2	protein-coding
224644	chr9	20619751	20621400	+	0	NA	intron (NM_001286691, intron 2 of 10)	CpG	1363	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
96852	chr17	42010971	42011330	+	0	NA	intron (NM_003315, intron 1 of 13)	intron (NM_003315, intron 1 of 13)	6015	NM_001144766	7266		NM_003315	ENSG00000168259	DNAJC7	DJ11|DJC7|TPR2|TTC2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding
123095	chr19	51448351	51448880	+	0	NA	Intergenic	Intergenic	9839	NM_014442	27181		NM_014442	ENSG00000105366	SIGLEC8	SAF2|SIGLEC-8|SIGLEC8L	sialic acid binding Ig like lectin 8	protein-coding
135737	chr2	169479021	169479900	+	0	NA	promoter-TSS (NM_152384)	promoter-TSS (NM_152384)	-34	NM_152384	129880		NM_152384	ENSG00000163093	BBS5	-	Bardet-Biedl syndrome 5	protein-coding
205739	chr7	23498501	23498980	+	0	NA	Intergenic	AluSc|SINE|Alu	8352	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
217487	chr8	29026371	29026730	+	0	NA	intron (NM_001324391, intron 6 of 10)	MIR|SINE|MIR	135236	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
136281	chr2	174716471	174718250	+	0	NA	Intergenic	Intergenic	-2440	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
130469	chr2	85546051	85547000	+	0	NA	3' UTR (NM_001142269, exon 14 of 14)	3' UTR (NM_001142269, exon 14 of 14)	7357	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
200467	chr6	135145001	135145980	+	0	NA	Intergenic	Intergenic	-35818	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
24993	chr10	3126551	3126850	+	0	NA	intron (NM_001345944, intron 16 of 21)	intron (NM_001345944, intron 16 of 21)	-7404	NR_132758	106633806		NR_132758		SNORD142	SNORA85|SNORD174|ZL68	small nucleolar RNA, C/D box 142	snoRNA
199477	chr6	118578771	118578930	+	0	NA	intron (NM_206921, intron 2 of 5)	LTR10B2|LTR|ERV1	30554	NM_002667	5350		NM_002667	ENSG00000198523	PLN	CMD1P|CMH18|PLB	phospholamban	protein-coding
24822	chr10	321371	321780	+	0	NA	intron (NM_014974, intron 31 of 36)	CpG	141581	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
88269	chr16	82946551	82946650	+	0	NA	intron (NM_001220490, intron 2 of 12)	AluSz6|SINE|Alu	43698	NR_110937	101928417		NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
167770	chr3	132784651	132784750	+	0	NA	intron (NR_002811, intron 3 of 10)	L1PA17|LINE|L1	-62241	NR_037804	100532724		NR_037804	ENSG00000274810	NPHP3-ACAD11	NPHP3	NPHP3-ACAD11 readthrough (NMD candidate)	ncRNA
71200	chr14	105068801	105069180	+	0	NA	Intergenic	L1MB3|LINE|L1	-3560	NM_013345	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
37493	chr11	18401851	18401950	+	0	NA	intron (NM_005566, intron 4 of 7)	intron (NM_005566, intron 4 of 7)	5634	NM_001165414	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
36296	chr11	3828701	3829550	+	0	NA	intron (NM_001665, intron 1 of 1)	intron (NM_001665, intron 1 of 1)	11834	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
82667	chr16	19558871	19559750	+	0	NA	intron (NR_158160, intron 1 of 28)	MER5A1|DNA|hAT-Charlie	3607	NM_001300743	57020		NM_020314	ENSG00000103544	VPS35L	C16orf62|EC97|RTSC3	VPS35 endosomal protein sorting factor like	protein-coding
205865	chr7	24978521	24979600	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	1118	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
69741	chr14	98931021	98931280	+	0	NA	Intergenic	Intergenic	219537	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
225228	chr9	34191401	34191800	+	0	NA	intron (NM_001171201, intron 1 of 5)	intron (NM_001171201, intron 1 of 5)	12557	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
11147	chr1	86798251	86798850	+	0	NA	Intergenic	AluSx3|SINE|Alu	93974	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
180017	chr5	1025821	1026080	+	0	NA	intron (NM_001271082, intron 3 of 10).2	intron (NM_001271082, intron 3 of 10).2	16988	NM_001271082	85409		NM_033120	ENSG00000145506	NKD2	Naked2	NKD inhibitor of WNT signaling pathway 2	protein-coding
211268	chr7	102688051	102689200	+	0	NA	intron (NR_146066, intron 7 of 11)	intron (NR_146066, intron 7 of 11)	-16890	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
90248	chr17	790551	791330	+	0	NA	intron (NM_018146, intron 3 of 3)	intron (NM_018146, intron 3 of 3)	8587	NM_018146	55178		NM_018146	ENSG00000171861	MRM3	RMTL1|RNMTL1	mitochondrial rRNA methyltransferase 3	protein-coding
197679	chr6	85593701	85595050	+	0	NA	promoter-TSS (NM_001350543)	promoter-TSS (NM_001350543)	-219	NM_001350536	57231		NM_020468	ENSG00000135317	SNX14	RGS-PX2|SCAR20	sorting nexin 14	protein-coding
179756	chr5	259301	259700	+	0	NA	Intergenic	CpG	12024	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
178873	chr4	154743571	154744350	+	0	NA	promoter-TSS (NM_004744)	promoter-TSS (NM_004744)	-40	NM_004744	9227		NM_004744	ENSG00000121207	LRAT	LCA14	lecithin retinol acyltransferase	protein-coding
101436	chr17	67424821	67425550	+	0	NA	intron (NM_181671, intron 1 of 9)	LTR7B|LTR|ERV1	-46304	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
132465	chr2	105876371	105876530	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	24603	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
77035	chr15	78756151	78756780	+	0	NA	Intergenic	Intergenic	4428	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
43715	chr11	86041821	86042350	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	26999	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
20093	chr1	186605871	186606030	+	0	NA	Intergenic	L1M1|LINE|L1	74473	NM_000963	5743		NM_000963	ENSG00000073756	PTGS2	COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2	prostaglandin-endoperoxide synthase 2	protein-coding
66956	chr14	65864571	65864730	+	0	NA	Intergenic	Intergenic	393548	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
94826	chr17	31390301	31390500	+	0	NA	Intergenic	L2c|LINE|L2	-1275	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
99137	chr17	49315551	49316300	+	0	NA	intron (NR_135579, intron 3 of 7)	intron (NR_135579, intron 3 of 7)	-27471	NR_106745	102465137		NR_106745	ENSG00000273500	MIR6129	hsa-mir-6129	microRNA 6129	ncRNA
200838	chr6	138109121	138110030	+	0	NA	Intergenic	Intergenic	-2156	NM_022121	64065		NM_022121	ENSG00000112378	PERP	EKVP7|KCP1|KRTCAP1|OLMS2|PIGPC1|THW|dJ496H19.1	p53 apoptosis effector related to PMP22	protein-coding
231899	chr9	133071201	133071400	+	0	NA	exon (NM_001807, exon 11 of 11)	exon (NM_001807, exon 11 of 11)	9319	NM_001807	1056		NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
101897	chr17	74379251	74380400	+	0	NA	Intergenic	Intergenic	12319	NM_001331077	350383		NM_181790	ENSG00000257008	GPR142	GPRg1b|PGR2	G protein-coupled receptor 142	protein-coding
6250	chr1	27559221	27559480	+	0	NA	intron (NM_001029882, intron 1 of 6)	AluJo|SINE|Alu	44144	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
124629	chr2	1550601	1551050	+	0	NA	Intergenic	Intergenic	-1105	NR_168373	102723730		NR_168373		LOC102723730	-	uncharacterized LOC102723730	ncRNA
205951	chr7	26117551	26117650	+	0	NA	Intergenic	Intergenic	-34598	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
158316	chr22	50432071	50432500	+	0	NA	exon (NM_001365836, exon 14 of 26)	exon (NM_001365836, exon 14 of 26)	24843	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
118396	chr19	35737321	35738000	+	0	NA	exon (NM_014727, exon 34 of 37)	exon (NM_014727, exon 34 of 37)	4792	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
43674	chr11	85780001	85780200	+	0	NA	intron (NM_032943, intron 1 of 18)	intron (NM_032943, intron 1 of 18)	-22031	NM_001162953	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
56532	chr12	116737781	116738800	+	0	NA	promoter-TSS (NM_024738)	promoter-TSS (NM_024738)	-1	NM_001109903	84900		NM_032814	ENSG00000135119	RNFT2	TMEM118	ring finger protein, transmembrane 2	protein-coding
210976	chr7	101813651	101814590	+	0	NA	Intergenic	Intergenic	-1887	NM_181500	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
69978	chr14	99944071	99944430	+	0	NA	Intergenic	Intergenic	-27172	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
26391	chr10	16949951	16950050	+	0	NA	intron (NM_001081, intron 34 of 66)	intron (NM_001081, intron 34 of 66)	-132546	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
57298	chr12	121653921	121654530	+	0	NA	intron (NM_173855, intron 3 of 5)	intron (NM_173855, intron 3 of 5)	15429	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
236311	chrX	68686271	68686630	+	0	NA	intron (NM_001142503, intron 2 of 14)	CpG	-7189	NM_001142504	9754		NM_014725	ENSG00000130052	STARD8	ARHGAP38|DLC3|STARTGAP3	StAR related lipid transfer domain containing 8	protein-coding
202768	chr6	159055821	159056300	+	0	NA	Intergenic	Intergenic	-10908	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
95233	chr17	35312741	35315630	+	0	NA	Intergenic	L1PA15-16|LINE|L1	59436	NM_001376010	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
213249	chr7	134327901	134328200	+	0	NA	Intergenic	L2b|LINE|L2	-11120	NM_032826	84912		NM_032826	ENSG00000205060	SLC35B4	YEA|YEA4	solute carrier family 35 member B4	protein-coding
82378	chr16	16039171	16039330	+	0	NA	intron (NM_004996, intron 7 of 30)	(TG)n|Simple_repeat|Simple_repeat	89634	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
205601	chr7	21944551	21944900	+	0	NA	intron (NM_001127370, intron 1 of 10)	intron (NM_001127370, intron 1 of 10)	1174	NM_018719	55536		NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
132572	chr2	106492651	106492750	+	0	NA	intron (NM_001349727, intron 2 of 5)	intron (NM_001349727, intron 2 of 5)	5336	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
103371	chr17	78128301	78129700	+	0	NA	promoter-TSS (NM_001374593)	promoter-TSS (NM_001374593)	-206	NM_001321185	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
53753	chr12	68663021	68663480	+	0	NA	3' UTR (NM_015646, exon 8 of 8)	3' UTR (NM_015646, exon 8 of 8)	23609	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
235564	chrX	47361741	47362530	+	0	NA	Intergenic	Intergenic	-8443	NM_003446	7712		NM_003446	ENSG00000147117	ZNF157	HZF22	zinc finger protein 157	protein-coding
30701	chr10	80534851	80534950	+	0	NA	intron (NR_120661, intron 1 of 1)	SVA_D|Retroposon|SVA	1042	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
134338	chr2	136115151	136115600	+	0	NA	exon (NM_003467, exon 2 of 2)	exon (NM_003467, exon 2 of 2)	860	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
13316	chr1	113638821	113638950	+	0	NA	intron (NM_152900, intron 9 of 20)	L1PA3|LINE|L1	120270	NM_006608	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
151386	chr21	45972401	45972600	+	0	NA	promoter-TSS (NR_109931)	promoter-TSS (NR_109931)	-470	NR_109931	101928796		NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
183827	chr5	84623151	84623250	+	0	NA	Intergenic	Intergenic	-238320	NM_005711	10085		NM_005711	ENSG00000164176	EDIL3	DEL1	EGF like repeats and discoidin domains 3	protein-coding
36822	chr11	9756401	9757250	+	0	NA	non-coding (NR_033972, exon 3 of 3)	non-coding (NR_033972, exon 3 of 3)	-1468	NR_036485	283104		NR_036485	ENSG00000246273	SBF2-AS1	-	SBF2 antisense RNA 1	ncRNA
99504	chr17	50202101	50202530	+	0	NA	promoter-TSS (NM_000088)	promoter-TSS (NM_000088)	-684	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
36993	chr11	11877771	11877930	+	0	NA	intron (NM_001372100, intron 2 of 28)	(TG)n|Simple_repeat|Simple_repeat	35878	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
94561	chr17	29616801	29617600	+	0	NA	intron (NM_032854, intron 5 of 9)	CpG-10929	917	NM_001351302	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
170856	chr3	191379551	191379650	+	0	NA	intron (NM_178335, intron 6 of 11)	intron (NM_178335, intron 6 of 11)	-45924	NR_120606	103344926		NR_120606		PYDC2-AS1	LINCR-0002	PYDC2 antisense RNA 1	ncRNA
129244	chr2	68363851	68363950	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-1382	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
207635	chr7	45031021	45031550	+	0	NA	intron (NM_001029835, intron 1 of 9)	AluSz|SINE|Alu	3651	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
17551	chr1	156802601	156803250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12825	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
106947	chr18	28177721	28178000	+	0	NA	promoter-TSS (NM_001792)	promoter-TSS (NM_001792)	-730	NM_001792	1000		NM_001792	ENSG00000170558	CDH2	ACOGS|ADHD8|ARVD14|CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
98040	chr17	45430651	45432190	+	0	NA	intron (NR_169600, intron 1 of 17)	CpG	1450	NM_174919	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
24296	chr1	236543101	236543700	+	0	NA	intron (NM_201545, intron 9 of 11)	intron (NM_201545, intron 9 of 11)	-18892	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
236949	chrX	100928651	100929430	+	0	NA	promoter-TSS (NM_212559)	promoter-TSS (NM_212559)	-123	NM_212559	402415		NM_212559	ENSG00000182489	XKRX	XKR2|XPLAC|XRG2	XK related X-linked	protein-coding
218704	chr8	58582671	58583200	+	0	NA	TTS (NM_001330537)	TTS (NM_001330537)	29674	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
202752	chr6	159036701	159037600	+	0	NA	intron (NM_054114, intron 9 of 9)	intron (NM_054114, intron 9 of 9)	5203	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
166454	chr3	114178821	114179100	+	0	NA	promoter-TSS (NM_000796)	promoter-TSS (NM_000796)	92	NM_000796	1814		NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
228751	chr9	110143671	110144380	+	0	NA	intron (NM_147150, intron 8 of 9)	intron (NM_147150, intron 8 of 9)	18524	NM_001136562	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
6602	chr1	28778701	28778900	+	0	NA	Intergenic	AluY|SINE|Alu	-33370	NM_000911	4985		NM_000911	ENSG00000116329	OPRD1	DOP|DOR|DOR1|OPRD	opioid receptor delta 1	protein-coding
114289	chr19	11639351	11640380	+	0	NA	Intergenic	CpG	27224	NR_002944	664709		NR_002944		HNRNPA1P10	HNRPA1L-2	heterogeneous nuclear ribonucleoprotein A1 pseudogene 10	pseudo
153745	chr22	29326851	29327550	+	0	NA	TTS (NM_001166019)	TTS (NM_001166019)	6058	NR_003686	100113380		NR_003686	ENSG00000239127	SNORD125	-	small nucleolar RNA, C/D box 125	snoRNA
75723	chr15	68194951	68195380	+	0	NA	intron (NR_104583, intron 1 of 1)	intron (NR_104583, intron 1 of 1)	10167	NM_033429	91860		NM_033429	ENSG00000129007	CALML4	NY-BR-20	calmodulin like 4	protein-coding
22429	chr1	220217471	220217630	+	0	NA	intron (NM_012414, intron 2 of 34)	intron (NM_012414, intron 2 of 34)	-16874	NR_002994	677818		NR_002994	ENSG00000222370	SNORA36B	ACA36b	small nucleolar RNA, H/ACA box 36B	snoRNA
139435	chr2	223602271	223602500	+	0	NA	promoter-TSS (NM_003469)	promoter-TSS (NM_003469)	-24	NM_003469	7857		NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
100216	chr17	59170621	59171100	+	0	NA	intron (NM_018304, intron 2 of 9)	intron (NM_018304, intron 2 of 9)	15114	NM_018304	55771		NM_018304	ENSG00000068489	PRR11	-	proline rich 11	protein-coding
78706	chr15	98160171	98160580	+	0	NA	Intergenic	Intergenic	-71622	NR_120325	101927332		NR_120325	ENSG00000259611	LINC01582	-	long intergenic non-protein coding RNA 1582	ncRNA
152594	chr22	21316921	21317180	+	0	NA	intron (NR_136559, intron 4 of 11)	intron (NR_136559, intron 4 of 11)	9586	NR_136559	100996335		NR_136559	ENSG00000206142	FAM230H	-	family with sequence similarity 230 member H	ncRNA
112514	chr19	6480371	6480530	+	0	NA	intron (NM_024898, intron 1 of 22)	intron (NM_024898, intron 1 of 22)	1337	NM_001290331	79958		NM_024898	ENSG00000205744	DENND1C	FAM31C	DENN domain containing 1C	protein-coding
164756	chr3	69082821	69083480	+	0	NA	Intergenic	Intergenic	-1787	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
141797	chr20	278751	279280	+	0	NA	intron (NM_153269, intron 5 of 10)	intron (NM_153269, intron 5 of 10)	11735	NM_153269	140680		NM_080571	ENSG00000196476	C20orf96	dJ1103G7.2	chromosome 20 open reading frame 96	protein-coding
163236	chr3	50267901	50268430	+	0	NA	promoter-TSS (NM_001290060)	promoter-TSS (NM_001290060)	607	NM_001005914	7869		NM_004636	ENSG00000012171	SEMA3B	LUCA-1|SEMA5|SEMAA|SemA|semaV	semaphorin 3B	protein-coding
25932	chr10	11335321	11336380	+	0	NA	3' UTR (NM_001326324, exon 15 of 15)	3' UTR (NM_001326324, exon 15 of 15)	8824	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
151467	chr21	46226251	46226630	+	0	NA	intron (NM_001145437, intron 2 of 20)	intron (NM_001145437, intron 2 of 20)	2334	NM_002340	4047		NM_002340	ENSG00000160285	LSS	APMR4|CTRCT44|HYPT14|OSC	lanosterol synthase	protein-coding
185187	chr5	119368201	119369900	+	0	NA	intron (NM_014350, intron 1 of 1)	AluSx1|SINE|Alu	13031	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
218603	chr8	56005071	56005430	+	0	NA	intron (NM_002350, intron 12 of 12)	L1MB3|LINE|L1	68651	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
38849	chr11	47329351	47329730	+	0	NA	non-coding (NR_164835, exon 37 of 37)	non-coding (NR_164835, exon 37 of 37)	23162	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
16759	chr1	155328021	155328880	+	0	NA	intron (NM_014328, intron 8 of 8)	AluSx1|SINE|Alu	3943	NM_001278230	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
136042	chr2	172494921	172495180	+	0	NA	intron (NM_001316306, intron 23 of 25)	L4_C_Mam|LINE|RTE-X	-29028	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
55718	chr12	108282571	108282930	+	0	NA	Intergenic	Intergenic	37912	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
215688	chr8	822101	822500	+	0	NA	intron (NR_073397, intron 2 of 3)	intron (NR_073397, intron 2 of 3)	60926	NR_160729	105377777		NR_160729		LOC105377777	-	uncharacterized LOC105377777	ncRNA
198112	chr6	90302771	90302930	+	0	NA	Intergenic	Intergenic	-5942	NM_001170794	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
75188	chr15	64773951	64774250	+	0	NA	intron (NM_194272, intron 1 of 7)	intron (NM_194272, intron 1 of 7)	643	NR_138363	348093		NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
111561	chr19	4051721	4052080	+	0	NA	intron (NM_015898, intron 2 of 2)	intron (NM_015898, intron 2 of 2)	13629	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
132203	chr2	102006221	102006480	+	0	NA	intron (NR_048564, intron 1 of 8)	intron (NR_048564, intron 1 of 8)	7389	NR_048564	7850		NM_004633	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor type 2	protein-coding
76057	chr15	72318051	72318850	+	0	NA	intron (NM_052840, intron 1 of 12)	intron (NM_052840, intron 1 of 12)	1496	NM_001172684	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
201060	chr6	142544521	142544780	+	0	NA	intron (NR_027311, intron 2 of 2)	intron (NR_027311, intron 2 of 2)	93186	NR_027311	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
34391	chr10	132352151	132352900	+	0	NA	intron (NM_030626, intron 7 of 10)	CpG	15185	NM_001309474	80313		NM_030626	ENSG00000148814	LRRC27	-	leucine rich repeat containing 27	protein-coding
66253	chr14	61355551	61356330	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	34497	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
68397	chr14	80954721	80955180	+	0	NA	promoter-TSS (NM_001018036)	promoter-TSS (NM_001018036)	-671	NM_000369	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
67456	chr14	70819251	70819550	+	0	NA	Intergenic	AluJb|SINE|Alu	-9887	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
9085	chr1	45002271	45002430	+	0	NA	TTS (NM_024602)	TTS (NM_024602)	8974	NM_024602	79654		NM_024602	ENSG00000126107	HECTD3	-	HECT domain E3 ubiquitin protein ligase 3	protein-coding
88481	chr16	85099351	85100080	+	0	NA	intron (NM_198491, intron 7 of 7)	AluSz|SINE|Alu	12757	NM_198491	339145		NM_198491	ENSG00000153789	CIBAR2	FAM92B	CBY1 interacting BAR domain containing 2	protein-coding
125521	chr2	12761171	12761330	+	0	NA	Intergenic	Intergenic	23883	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
94292	chr17	28724551	28724650	+	0	NA	TTS (NR_000009)	TTS (NR_000009)	919	NR_000009	26772		NR_000009	ENSG00000238597	SNORD4B	RNU101B|Z17B	small nucleolar RNA, C/D box 4B	snoRNA
211252	chr7	102669001	102669630	+	0	NA	intron (NM_032959, intron 1 of 8)	AluSx|SINE|Alu	2420	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
31516	chr10	96744101	96744450	+	0	NA	Intergenic	Intergenic	-5991	NR_026712	728658		NR_026712	ENSG00000236552	RPL13AP5	RPL13A_8_1086|bA196N24.2	ribosomal protein L13a pseudogene 5	pseudo
136199	chr2	174565571	174565800	+	0	NA	intron (NM_001375839, intron 6 of 6)	Tigger15a|DNA|TcMar-Tigger	-7613	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
214013	chr7	143255271	143255630	+	0	NA	intron (NR_133932, intron 2 of 2)	L1MA7|LINE|L1	-7979	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
75881	chr15	69729201	69729500	+	0	NA	Intergenic	Intergenic	-105884	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
206197	chr7	28195901	28196500	+	0	NA	intron (NR_034097, intron 2 of 3)	intron (NR_034097, intron 2 of 3)	-15405	NM_175061	221895		NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
148699	chr21	6373701	6374500	+	0	NA	Intergenic	LTR43-int|LTR|ERV1	85982	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
218953	chr8	61012521	61013180	+	0	NA	Intergenic	Intergenic	-45102	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
71889	chr15	22483251	22483550	+	0	NA	Intergenic	Intergenic	-1026	NR_036470	100132101		NR_036470		HERC2P7	-	HERC2 pseudogene 7	pseudo
69088	chr14	92107871	92108830	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-1729	NM_001127697	4287		NM_004993	ENSG00000066427	ATXN3	AT3|ATX3|JOS|MJD|MJD1|SCA3	ataxin 3	protein-coding
215415	chr7	157611651	157611950	+	0	NA	intron (NM_130842, intron 14 of 21)	intron (NM_130842, intron 14 of 21)	-37378	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
191182	chr6	5143601	5144180	+	0	NA	intron (NM_001318782, intron 2 of 3)	intron (NM_001318782, intron 2 of 3)	4432	NR_037462	100500900		NR_037462	ENSG00000265083	MIR3691	mir-3691	microRNA 3691	ncRNA
32112	chr10	101217521	101218080	+	0	NA	Intergenic	CpG	11160	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
229047	chr9	114334201	114334930	+	0	NA	3' UTR (NM_001317950, exon 22 of 22)	3' UTR (NM_001317950, exon 22 of 22)	4696	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
149216	chr21	25458401	25458630	+	0	NA	Intergenic	Intergenic	-26814	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
120441	chr19	44304071	44304300	+	0	NA	intron (NM_004234, intron 1 of 4)	intron (NM_004234, intron 1 of 4)	840	NM_004234	9310		NM_004234	ENSG00000159917	ZNF235	ANF270|HZF6|ZFP93|ZNF270	zinc finger protein 235	protein-coding
209738	chr7	87188221	87188480	+	0	NA	intron (NR_024550, intron 13 of 17)	intron (NR_024550, intron 13 of 17)	31382	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
95936	chr17	38947201	38947500	+	0	NA	intron (NM_001008777, intron 6 of 10)	AluJr|SINE|Alu	20053	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
217398	chr8	28349871	28350030	+	0	NA	intron (NM_018660, intron 8 of 9)	intron (NM_018660, intron 8 of 9)	11303	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
186335	chr5	134735371	134735730	+	0	NA	Intergenic	AluJo|SINE|Alu	-2998	NM_001745	819		NM_001745	ENSG00000164615	CAMLG	CAML|CDG2Z|GET2	calcium modulating ligand	protein-coding
134507	chr2	143398021	143398680	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	268931	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
204509	chr7	4788601	4789200	+	0	NA	promoter-TSS (NR_039800)	promoter-TSS (NR_039800)	-261	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
210817	chr7	100881501	100882250	+	0	NA	intron (NM_015908, intron 4 of 19)	intron (NM_015908, intron 4 of 19)	6772	NM_001128852	51593		NM_015908	ENSG00000087087	SRRT	ARS2|ASR2|serrate	serrate, RNA effector molecule	protein-coding
206222	chr7	28686601	28686800	+	0	NA	intron (NM_001011666, intron 1 of 6)	intron (NM_001011666, intron 1 of 6)	567	NM_001011666	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
1267	chr1	2308021	2308350	+	0	NA	3' UTR (NM_003036, exon 7 of 7)	3' UTR (NM_003036, exon 7 of 7)	44476	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
113981	chr19	10822351	10822450	+	0	NA	intron (NM_001005362, intron 15 of 19)	AluJo|SINE|Alu	-4904	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
236588	chrX	73263071	73263230	+	0	NA	Intergenic	HERVI-int|LTR|ERV1	-48299	NM_021963	4674		NM_021963	ENSG00000186462	NAP1L2	BPX	nucleosome assembly protein 1 like 2	protein-coding
147008	chr20	53576321	53577080	+	0	NA	exon (NM_001385034, exon 4 of 5)	exon (NM_001385034, exon 4 of 5)	17139	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
181410	chr5	40700251	40700750	+	0	NA	Intergenic	L1PA14|LINE|L1	20585	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
46409	chr11	126351451	126351750	+	0	NA	intron (NR_033839, intron 1 of 1)	MLT1A0|LTR|ERVL-MaLR	3987	NR_033839	399972		NR_033839		GSEC	DCPS-AS1|ST3GAL4-AS1	G-quadruplex forming sequence containing lncRNA	ncRNA
134886	chr2	148887351	148888600	+	0	NA	intron (NM_004522, intron 1 of 25)	CpG	12748	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
126673	chr2	29309121	29309380	+	0	NA	intron (NM_004304, intron 8 of 28)	intron (NM_004304, intron 8 of 28)	-85350	NM_001353765	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
15193	chr1	149206571	149206730	+	0	NA	Intergenic	AluY|SINE|Alu	-5504	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
151838	chr22	18517101	18517500	+	0	NA	intron (NM_001355479, intron 3 of 5)	intron (NM_001355479, intron 3 of 5)	861	NM_001355479	728226		NM_001355479	ENSG00000274252	GGTLC3	GGT	gamma-glutamyltransferase light chain family member 3	protein-coding
168255	chr3	141412201	141412700	+	0	NA	intron (NM_001376165, intron 3 of 4)	intron (NM_001376165, intron 3 of 4)	9436	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
179792	chr5	370671	371030	+	0	NA	intron (NR_165159, intron 5 of 13)	intron (NR_165159, intron 5 of 13)	48240	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
165482	chr3	99819021	99819350	+	0	NA	intron (NR_110821, intron 1 of 2)	intron (NR_110821, intron 1 of 2)	1323	NM_032359	84319		NM_032359	ENSG00000184220	CMSS1	C3orf26	cms1 ribosomal small subunit homolog	protein-coding
197426	chr6	73601351	73601650	+	0	NA	intron (NM_001382636, intron 7 of 8)	SVA_D|Retroposon|SVA	52492	NM_001382635	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
182693	chr5	68189101	68189700	+	0	NA	promoter-TSS (NR_105003)	promoter-TSS (NR_105003)	-476	NR_105003	102467655		NR_105003	ENSG00000253787	LINC02219	-	long intergenic non-protein coding RNA 2219	ncRNA
228939	chr9	113343851	113344100	+	0	NA	Intergenic	Intergenic	-3700	NM_001012361	114987		NM_145241	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
123684	chr19	55008251	55008500	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	29889	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
192878	chr6	27471051	27471150	+	0	NA	intron (NM_001318893, intron 2 of 5)	L3|LINE|CR1	1798	NM_001318892	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
19297	chr1	172883401	172884100	+	0	NA	Intergenic	Intergenic	167191	NM_005092	8995		NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	TNF superfamily member 18	protein-coding
87887	chr16	78734401	78735200	+	0	NA	intron (NM_016373, intron 8 of 8)	MLT2B4|LTR|ERVL	635146	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
67305	chr14	69580271	69580430	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-5479	NM_001271507	56936		NM_020181	ENSG00000267909	CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
188480	chr5	154766351	154766950	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	9496	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
34856	chr11	329151	329850	+	0	NA	Intergenic	LTR71B|LTR|ERV1	-8640	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
229229	chr9	114924451	114924750	+	0	NA	intron (NM_001244, intron 1 of 3)	L1MC4|LINE|L1	5991	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
51686	chr12	53097321	53098660	+	0	NA	exon (NM_002178, exon 1 of 4)	exon (NM_002178, exon 1 of 4)	323	NM_002178	3489		NM_002178	ENSG00000167779	IGFBP6	IBP6	insulin like growth factor binding protein 6	protein-coding
217366	chr8	27901171	27901530	+	0	NA	intron (NM_173833, intron 7 of 8)	intron (NM_173833, intron 7 of 8)	-15234	NR_036249	100422828		NR_036249	ENSG00000265847	MIR4287	-	microRNA 4287	ncRNA
136924	chr2	189785821	189786100	+	0	NA	intron (NR_110332, intron 2 of 12)	AluSx|SINE|Alu	1510	NM_001128143	5378		NM_000534	ENSG00000064933	PMS1	HNPCC3|MLH2|PMSL1|hPMS1	PMS1 homolog 1, mismatch repair system component	protein-coding
200386	chr6	134285221	134285680	+	0	NA	intron (NM_001143676, intron 1 of 13)	AluSx3|SINE|Alu	32608	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
40593	chr11	64489771	64490230	+	0	NA	Intergenic	Intergenic	40943	NR_073177	100996455		NR_073177	ENSG00000181908	LINC02724	-	long intergenic non-protein coding RNA 2724	ncRNA
237131	chrX	106649721	106650000	+	0	NA	intron (NM_018015, intron 11 of 13)	intron (NM_018015, intron 11 of 13)	10046	NR_039765	100616144		NR_039765	ENSG00000263515	MIR548AN	-	microRNA 548an	ncRNA
214319	chr7	149278551	149278850	+	0	NA	intron (NR_144367, intron 6 of 6)	intron (NR_144367, intron 6 of 6)	-6581	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
182794	chr5	68689371	68689530	+	0	NA	Intergenic	Intergenic	340477	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
173130	chr4	6620171	6620550	+	0	NA	intron (NM_015274, intron 18 of 18)	intron (NM_015274, intron 18 of 18)	-19731	NM_033296	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
73961	chr15	51827721	51827980	+	0	NA	Intergenic	AluJo|SINE|Alu	-1803	NM_014547	29766		NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
62766	chr13	108224451	108224880	+	0	NA	intron (NM_032859, intron 1 of 1)	Charlie21a|DNA|hAT-Charlie	6273	NM_032859	84945		NM_032859	ENSG00000139826	ABHD13	BEM46L1|C13orf6|bA153I24.2	abhydrolase domain containing 13	protein-coding
183545	chr5	80107671	80107830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-24085	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
3503	chr1	16043601	16043800	+	0	NA	promoter-TSS (NM_000085)	promoter-TSS (NM_000085)	-82	NM_000085	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
193086	chr6	28860801	28861080	+	0	NA	non-coding (NR_033379, exon 2 of 2)	non-coding (NR_033379, exon 2 of 2)	2737	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
65832	chr14	54896151	54896250	+	0	NA	intron (NM_001024024, intron 1 of 6)	intron (NM_001024024, intron 1 of 6)	6624	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
195775	chr6	40476901	40478280	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	99253	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
126774	chr2	30255601	30256480	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	24506	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
14370	chr1	144143121	144144200	+	0	NA	Intergenic	Intergenic	104545	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
59565	chr13	27406171	27406730	+	0	NA	Intergenic	Intergenic	-18169	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
5053	chr1	24562601	24562800	+	0	NA	intron (NM_001010980, intron 1 of 3)	L1MEh|LINE|L1	6613	NM_001010980	400746		NM_001010980	ENSG00000184454	NCMAP	C1orf130|MP11	non-compact myelin associated protein	protein-coding
121155	chr19	46360671	46360830	+	0	NA	intron (NM_001204284, intron 2 of 11)	AluSz6|SINE|Alu	13663	NM_001204284	5536		NM_006247	ENSG00000011485	PPP5C	PP5|PPP5|PPT	protein phosphatase 5 catalytic subunit	protein-coding
124476	chr19	58548451	58550100	+	0	NA	intron (NM_005762, intron 12 of 16)	intron (NM_005762, intron 12 of 16)	-1010	NR_106865	102465976		NR_106865	ENSG00000275924	MIR6807	hsa-mir-6807	microRNA 6807	ncRNA
157288	chr22	44213451	44214000	+	0	NA	Intergenic	(TCA)n|Simple_repeat|Simple_repeat	32800	NM_022141	64098		NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding
118352	chr19	35644201	35645930	+	0	NA	TTS (NM_001304549)	TTS (NM_001304549)	-3258	NM_001863	1340		NM_001863	ENSG00000126267	COX6B1	COX6B|COXG|COXVIb1|MC4DN7	cytochrome c oxidase subunit 6B1	protein-coding
102304	chr17	75349321	75349580	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	56228	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
212530	chr7	128838921	128839450	+	0	NA	intron (NM_001458, intron 8 of 47)	intron (NM_001458, intron 8 of 47)	8779	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
128032	chr2	47334951	47335400	+	0	NA	promoter-TSS (NR_001568)	promoter-TSS (NR_001568)	-140	NR_001568	618		NR_001568	ENSG00000236824	BCYRN1	BC200|BC200a|LINC00004|NCRNA00004	brain cytoplasmic RNA 1	ncRNA
102031	chr17	74857321	74858050	+	0	NA	intron (NM_001278553, intron 1 of 11)	intron (NM_001278553, intron 1 of 11)	2199	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
103662	chr17	78780601	78781700	+	0	NA	intron (NM_017456, intron 1 of 12)	AluJo|SINE|Alu	1058	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
95307	chr17	35567401	35568880	+	0	NA	promoter-TSS (NR_135479)	promoter-TSS (NR_135479)	26	NR_135479	105371743		NR_135479		SNHG30	LINC02001	small nucleolar RNA host gene 30	ncRNA
52484	chr12	55995921	55996500	+	0	NA	3' UTR (NM_001252037, exon 5 of 5)	3' UTR (NM_001252037, exon 5 of 5)	-1066	NM_001032386	6821		NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
59590	chr13	27533151	27533600	+	0	NA	Intergenic	Intergenic	-82773	NM_001166263	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
123783	chr19	55115721	55116700	+	0	NA	intron (NM_017607, intron 1 of 21)	intron (NM_017607, intron 1 of 21)	1427	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
202880	chr6	159972401	159973130	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	3683	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
95109	chr17	34892751	34893130	+	0	NA	Intergenic	Intergenic	68520	NM_006584	10693		NM_006584	ENSG00000132141	CCT6B	CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303	chaperonin containing TCP1 subunit 6B	protein-coding
91101	chr17	3659171	3659530	+	0	NA	intron (NM_001374494, intron 9 of 10)	MIR1_Amn|SINE|MIR	9228	NM_014604	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
84436	chr16	30394851	30396150	+	0	NA	promoter-TSS (NM_152652)	promoter-TSS (NM_152652)	80	NM_001324494	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
215293	chr7	157278271	157278700	+	0	NA	Intergenic	Intergenic	-58519	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
26143	chr10	13820321	13820580	+	0	NA	intron (NM_018027, intron 3 of 24)	intron (NM_018027, intron 3 of 24)	-112883	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
226726	chr9	75239271	75239430	+	0	NA	Intergenic	LTR18A|LTR|ERVL	150836	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
38413	chr11	44983471	44983980	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	9823	NR_026681	221122		NR_026681	ENSG00000254654	LINC02685	-	long intergenic non-protein coding RNA 2685	ncRNA
46670	chr11	128723421	128724230	+	0	NA	intron (NM_001271010, intron 1 of 9)	L2c|LINE|L2	-27802	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
13935	chr1	120180001	120180680	+	0	NA	Intergenic	Intergenic	-3820	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
78223	chr15	90648021	90649200	+	0	NA	intron (NR_120372, intron 2 of 3)	MER41B|LTR|ERV1	-11624	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
70840	chr14	103679101	103679600	+	0	NA	intron (NM_001130107, intron 12 of 15)	intron (NM_001130107, intron 12 of 15)	36101	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
86712	chr16	67548971	67549130	+	0	NA	Intergenic	Intergenic	11588	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
2974	chr1	11967101	11967330	+	0	NA	intron (NM_001316320, intron 17 of 19)	intron (NM_001316320, intron 17 of 19)	-12966	NM_001127660	9927		NM_014874	ENSG00000116688	MFN2	CMT2A|CMT2A2|CMT2A2A|CMT2A2B|CPRP1|HMSN6A|HSG|MARF|MSL	mitofusin 2	protein-coding
68027	chr14	75156701	75157630	+	0	NA	intron (NM_006827, intron 1 of 4)	intron (NM_006827, intron 1 of 4)	19447	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
34021	chr10	124709251	124710000	+	0	NA	intron (NR_120630, intron 2 of 2)	L1ME4b|LINE|L1	5597	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
187594	chr5	142866801	142867600	+	0	NA	intron (NR_046680, intron 2 of 5)	intron (NR_046680, intron 2 of 5)	1710	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
75206	chr15	64834351	64834450	+	0	NA	Intergenic	AluJo|SINE|Alu	-7483	NM_001195059	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
135480	chr2	161420571	161420730	+	0	NA	intron (NM_006593, intron 5 of 5)	intron (NM_006593, intron 5 of 5)	4353	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
145209	chr20	38900851	38901350	+	0	NA	intron (NM_001172735, intron 5 of 9)	intron (NM_001172735, intron 5 of 9)	-25317	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
217730	chr8	30652201	30652600	+	0	NA	intron (NM_001348353, intron 2 of 6)	L1MB8|LINE|L1	5218	NM_001348353	2961		NM_002095	ENSG00000197265	GTF2E2	FE|TF2E2|TFIIE-B|TTD6	general transcription factor IIE subunit 2	protein-coding
209390	chr7	76316401	76316600	+	0	NA	Intergenic	AluJo|SINE|Alu	13827	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
91808	chr17	7043601	7044650	+	0	NA	promoter-TSS (NM_153357)	promoter-TSS (NM_153357)	-33	NM_001370549	162515		NM_153357	ENSG00000174326	SLC16A11	MCT 11|MCT11	solute carrier family 16 member 11	protein-coding
224424	chr9	15277601	15278100	+	0	NA	intron (NM_152574, intron 1 of 19)	intron (NM_152574, intron 1 of 19)	-27632	NM_001168342	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
179547	chr4	185122721	185122980	+	0	NA	Intergenic	Intergenic	-20416	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
18645	chr1	166910371	166910880	+	0	NA	3' UTR (NM_199351, exon 10 of 10)	3' UTR (NM_199351, exon 10 of 10)	-34361	NM_053053	117143		NM_053053	ENSG00000152382	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
22501	chr1	221740521	221741400	+	0	NA	intron (NM_007207, intron 1 of 3)	intron (NM_007207, intron 1 of 3)	1129	NM_007207	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
196344	chr6	43180371	43181180	+	0	NA	3' UTR (NM_003131, exon 7 of 7)	3' UTR (NM_003131, exon 7 of 7)	-1421	NM_015089	23113		NM_015089	ENSG00000112659	CUL9	H7AP1|PARC	cullin 9	protein-coding
63125	chr13	113385451	113385750	+	0	NA	Intergenic	L1PB1|LINE|L1	-21452	NM_001286733	79774		NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
155089	chr22	37567101	37568000	+	0	NA	intron (NM_152243, intron 2 of 2)	intron (NM_152243, intron 2 of 2)	7070	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
125345	chr2	10864821	10865300	+	0	NA	Intergenic	Intergenic	-13207	NR_110575	101929733		NR_110575	ENSG00000271952	LINC01954	-	long intergenic non-protein coding RNA 1954	ncRNA
125870	chr2	24523571	24523730	+	0	NA	intron (NM_001362954, intron 1 of 23)	AluSc|SINE|Alu	31773	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
210311	chr7	99470601	99470800	+	0	NA	Intergenic	Intergenic	-2190	NM_001013258	285989		NM_213603	ENSG00000198556	ZNF789	-	zinc finger protein 789	protein-coding
108598	chr18	75223651	75224150	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	13103	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
6639	chr1	28930021	28930680	+	0	NA	intron (NM_001376013, intron 1 of 20)	AluJo|SINE|Alu	15774	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
158971	chr3	10252021	10253000	+	0	NA	intron (NM_014760, intron 2 of 7)	intron (NM_014760, intron 2 of 7)	4051	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
7805	chr1	36262801	36263000	+	0	NA	intron (NM_001321471, intron 3 of 12)	AluY|SINE|Alu	38457	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
30921	chr10	87168371	87168530	+	0	NA	intron (NM_001377166, intron 4 of 9)	AluJb|SINE|Alu	-56998	NM_001099338	728118		NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
13457	chr1	114508251	114508930	+	0	NA	intron (NM_033020, intron 1 of 18)	intron (NM_033020, intron 1 of 18)	2613	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
148970	chr21	13876301	13876700	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	-28136	NR_026755	54055		NR_026755	ENSG00000290541	CYP4F29P	4F-se4[6:7:8]|C21orf15|CYP4F-se4[6:7:8]|CYP4F3LP	cytochrome P450 family 4 subfamily F member 29, pseudogene	pseudo
103916	chr17	79821951	79822700	+	0	NA	Intergenic	AluSq|SINE|Alu	-1127	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
41074	chr11	65506101	65507900	+	0	NA	TTS (NR_002819)	TTS (NR_002819)	432	NR_145459	109136579		NR_145459	ENSG00000289740	TALAM1	-	TALAM1 transcript, MALAT1 antisense RNA	ncRNA
24485	chr1	244299171	244300150	+	0	NA	Intergenic	Intergenic	-52975	NM_001276348	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
236976	chrX	101401951	101402050	+	0	NA	intron (NR_164783, intron 2 of 7)	intron (NR_164783, intron 2 of 7)	5925	NM_000169	2717		NM_000169	ENSG00000102393	GLA	GALA	galactosidase alpha	protein-coding
37985	chr11	35029771	35030180	+	0	NA	Intergenic	Intergenic	88138	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
160936	chr3	36897121	36897380	+	0	NA	intron (NM_014831, intron 3 of 22)	AluSx|SINE|Alu	47804	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
58218	chr12	127381101	127381300	+	0	NA	Intergenic	Intergenic	-41128	NR_110057	101927616		NR_110057	ENSG00000256362	LINC02375	-	long intergenic non-protein coding RNA 2375	ncRNA
98611	chr17	47756551	47756850	+	0	NA	Intergenic	AluY|SINE|Alu	23464	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
141542	chr2	241318351	241318980	+	0	NA	intron (NM_001282973, intron 4 of 16)	intron (NM_001282973, intron 4 of 16)	2500	NM_001321033	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
66773	chr14	64549501	64550500	+	0	NA	promoter-TSS (NM_172365)	promoter-TSS (NM_172365)	39	NM_172365	145376		NM_172365	ENSG00000165807	PPP1R36	C14orf50	protein phosphatase 1 regulatory subunit 36	protein-coding
230664	chr9	128709201	128709400	+	0	NA	intron (NM_001317926, intron 6 of 21)	AluYe5|SINE|Alu	6797	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
110000	chr19	1424151	1424900	+	0	NA	intron (NM_001352035, intron 6 of 10)	intron (NM_001352035, intron 6 of 10)	-13871	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
158308	chr22	50405701	50405900	+	0	NA	intron (NM_001351648, intron 3 of 22)	intron (NM_001351648, intron 3 of 22)	-1642	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
200501	chr6	135537821	135538380	+	0	NA	intron (NR_152845, intron 2 of 4)	L2b|LINE|L2	40299	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
64348	chr14	24056971	24057330	+	0	NA	intron (NM_138360, intron 13 of 39).2	intron (NM_138360, intron 13 of 39).2	5141	NM_138360	90668		NM_138360	ENSG00000186648	CARMIL3	C14orf121|LRRC16B|crml-1	capping protein regulator and myosin 1 linker 3	protein-coding
222256	chr8	133250771	133251130	+	0	NA	intron (NM_001374844, intron 9 of 15)	MIRb|SINE|MIR	45740	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
192657	chr6	26188201	26189550	+	0	NA	exon (NM_003539, exon 1 of 1)	exon (NM_003539, exon 1 of 1)	237	NM_003539	8360		NM_003539	ENSG00000277157	H4C4	H4-16|H4/b|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C5|H4C6|H4C8|H4C9|H4FB|HIST1H4D|dJ221C16.9	H4 clustered histone 4	protein-coding
155383	chr22	38311671	38311830	+	0	NA	intron (NM_152221, intron 2 of 10)	MIR3|SINE|MIR	5683	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
86224	chr16	58113701	58113900	+	0	NA	non-coding (NR_136632, exon 6 of 6)	non-coding (NR_136632, exon 6 of 6)	15581	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
108566	chr18	74990371	74990530	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	215063	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
131117	chr2	90322301	90322700	+	0	NA	Intergenic	Intergenic	-684593	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
16279	chr1	154145921	154146380	+	0	NA	intron (NM_207308, intron 2 of 39)	L1MD3|LINE|L1	8966	NM_207308	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
124449	chr19	58511121	58511430	+	0	NA	exon (NM_012254, exon 1 of 10)	exon (NM_012254, exon 1 of 10)	717	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
6917	chr1	31640721	31640980	+	0	NA	intron (NM_012392, intron 1 of 4)	intron (NM_012392, intron 1 of 4)	3767	NM_001359651	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
201119	chr6	142876821	142877080	+	0	NA	intron (NM_006734, intron 1 of 9)	AluJb|SINE|Alu	68226	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
42382	chr11	68842871	68843490	+	0	NA	Intergenic	Intergenic	-1249	NM_001031847	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
43707	chr11	86023271	86023430	+	0	NA	intron (NM_007166, intron 3 of 19)	L2a|LINE|L2	45734	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
120712	chr19	45249571	45249800	+	0	NA	Intergenic	AluJb|SINE|Alu	-1586	NM_001199867	57787		NM_031417	ENSG00000007047	MARK4	MARK4L|MARK4S|MARKL1|MARKL1L|PAR-1D	microtubule affinity regulating kinase 4	protein-coding
77804	chr15	88455021	88455430	+	0	NA	Intergenic	Intergenic	12163	NM_022163	26589		NM_022163	ENSG00000259494	MRPL46	C15orf4|LIECG2|P2ECSL|mL46	mitochondrial ribosomal protein L46	protein-coding
42518	chr11	70423851	70424460	+	0	NA	intron (NM_005231, intron 12 of 17)	intron (NM_005231, intron 12 of 17)	25626	NM_005231	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
53976	chr12	74542101	74542300	+	0	NA	3' UTR (NM_001136262, exon 1 of 1)	3' UTR (NM_001136262, exon 1 of 1)	4365	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
157693	chr22	46358571	46358730	+	0	NA	Intergenic	Intergenic	22936	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
117613	chr19	23071121	23071380	+	0	NA	Intergenic	CpG	-9985	NR_110745	101929144		NR_110745	ENSG00000261615	LINC01858	-	long intergenic non-protein coding RNA 1858	ncRNA
68199	chr14	76821551	76821850	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-4708	NR_169573	145497		NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
138187	chr2	202655451	202656050	+	0	NA	intron (NM_173511, intron 1 of 7)	(AG)n|Simple_repeat|Simple_repeat	20781	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
47729	chr12	6467771	6468400	+	0	NA	intron (NM_016830, intron 1 of 4)	THE1A-int|LTR|ERVL-MaLR	2592	NR_123717	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
208189	chr7	64906471	64906700	+	0	NA	intron (NM_021148, intron 1 of 3)	intron (NM_021148, intron 1 of 3)	3312	NM_001385650	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
119484	chr19	40451301	40451500	+	0	NA	exon (NM_000713, exon 4 of 5)	exon (NM_000713, exon 4 of 5)	-7065	NM_203344	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
146687	chr20	50530801	50531000	+	0	NA	intron (NM_001278618, intron 1 of 8)	AluJo|SINE|Alu	20517	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
7507	chr1	33376951	33377330	+	0	NA	intron (NM_198040, intron 1 of 14)	MIRb|SINE|MIR	15645	NM_001385122	1912		NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2	protein-coding
177915	chr4	131209451	131209550	+	0	NA	Intergenic	L1HS|LINE|L1	-555338	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
172350	chr4	1717071	1717830	+	0	NA	intron (NM_138385, intron 2 of 2)	intron (NM_138385, intron 2 of 2)	3873	NM_001127266	92305		NM_138385	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129, E3 ubiquitin ligase	protein-coding
192907	chr6	27601801	27602580	+	0	NA	Intergenic	AluJo|SINE|Alu	-91845	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
143777	chr20	32438501	32438700	+	0	NA	3' UTR (NM_001363734, exon 11 of 11)	3' UTR (NM_001363734, exon 11 of 11)	44890	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
64702	chr14	34027251	34027430	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-76266	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
207552	chr7	44846901	44849300	+	0	NA	promoter-TSS (NM_012412)	promoter-TSS (NM_012412)	-13	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
116469	chr19	18095001	18095400	+	0	NA	intron (NM_001290024, intron 1 of 17)	AluSx1|SINE|Alu	-2578	NM_015016	23031		NM_015016	ENSG00000099308	MAST3	DEE108	microtubule associated serine/threonine kinase 3	protein-coding
33549	chr10	119301071	119301700	+	0	NA	intron (NM_005308, intron 1 of 15)	L1ME3A|LINE|L1	-76587	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
107261	chr18	42024751	42024850	+	0	NA	intron (NM_002647, intron 13 of 24)	AluY|SINE|Alu	69566	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
110281	chr19	1820821	1821180	+	0	NA	intron (NM_020695, intron 5 of 15)	AluJb|SINE|Alu	-1089	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
146719	chr20	50591971	50592680	+	0	NA	intron (NM_080829, intron 19 of 21)	intron (NM_080829, intron 19 of 21)	6539	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
182288	chr5	57302151	57302500	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	88251	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
230763	chr9	128904851	128905300	+	0	NA	intron (NM_019594, intron 2 of 3)	AluJr|SINE|Alu	-15907	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
183321	chr5	76713801	76714150	+	0	NA	Intergenic	AluSq2|SINE|Alu	1572	NR_028375	100302746		NR_028375		NCRUPAR	NCRNA00193|ncR-uPAR	non-protein coding RNA, upstream of F2R/PAR1	ncRNA
104035	chr17	80129371	80130350	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	17268	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
105433	chr17	82889951	82890330	+	0	NA	intron (NM_005993, intron 16 of 38)	intron (NM_005993, intron 16 of 38)	-50118	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
46521	chr11	128454351	128454650	+	0	NA	Intergenic	MIR3|SINE|MIR	67810	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
165995	chr3	108119671	108120230	+	0	NA	Intergenic	AluJb|SINE|Alu	-5114	NR_110030	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
147464	chr20	59041121	59041380	+	0	NA	intron (NM_016045, intron 1 of 5)	intron (NM_016045, intron 1 of 5)	1536	NM_001256403	51012		NM_016045	ENSG00000101166	PRELID3B	C20orf45|SLMO2|UPS2|dJ543J19.5	PRELI domain containing 3B	protein-coding
117714	chr19	29285971	29286130	+	0	NA	TTS (NR_040029)	TTS (NR_040029)	-72899	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
157794	chr22	46773101	46773330	+	0	NA	promoter-TSS (NM_001284305)	promoter-TSS (NM_001284305)	-712	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
193534	chr6	30597301	30598200	+	0	NA	Intergenic	AluSx|SINE|Alu	13418	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
179825	chr5	466651	466950	+	0	NA	exon (NM_007277, exon 13 of 13)	exon (NM_007277, exon 13 of 13)	6165	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
29513	chr10	70672221	70673150	+	0	NA	5' UTR (NM_080722, exon 1 of 22)	5' UTR (NM_080722, exon 1 of 22)	179	NM_080722	140766		NM_080722	ENSG00000138316	ADAMTS14	-	ADAM metallopeptidase with thrombospondin type 1 motif 14	protein-coding
232833	chr9	136741751	136742850	+	0	NA	intron (NR_160517, intron 1 of 3)	intron (NR_160517, intron 1 of 3)	640	NR_160514	414332		NM_001001712	ENSG00000187922	LCN10	-	lipocalin 10	protein-coding
166040	chr3	108599701	108600050	+	0	NA	intron (NM_014648, intron 1 of 32)	MLT1A0|LTR|ERVL-MaLR	10153	NM_014648	9666		NM_014648	ENSG00000198919	DZIP3	PPP1R66|UURF2|hRUL138	DAZ interacting zinc finger protein 3	protein-coding
172801	chr4	2961501	2962500	+	0	NA	intron (NM_001291978, intron 1 of 17)	intron (NM_001291978, intron 1 of 17)	1406	NM_001291978	8602		NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
141746	chr2	241887701	241888830	+	0	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	6902	NR_110220	101927289		NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
109544	chr19	871501	872100	+	0	NA	intron (NM_005481, intron 12 of 15)	(GGGAGAG)n|Simple_repeat|Simple_repeat	12136	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
15016	chr1	148264871	148265280	+	0	NA	Intergenic	Intergenic	-18004	NR_120331	101927468		NR_120331	ENSG00000227733	LOC101927468	-	uncharacterized LOC101927468	ncRNA
14895	chr1	147042751	147043250	+	0	NA	promoter-TSS (NR_024442)	promoter-TSS (NR_024442)	39	NR_024442	728989		NR_024442		LOC728989	-	phosphodiesterase 4D interacting protein pseudogene	pseudo
14401	chr1	144249971	144250900	+	0	NA	promoter-TSS (NR_027355).2	promoter-TSS (NR_027355).2	-138	NR_027355	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
148858	chr21	8422551	8423630	+	0	NA	Intergenic	Intergenic	-9440	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
134550	chr2	143802951	143803530	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-133827	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
128683	chr2	61516251	61516750	+	0	NA	intron (NM_003400, intron 4 of 24)	AluSp|SINE|Alu	21856	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
167509	chr3	129245501	129246230	+	0	NA	Intergenic	Intergenic	-3741	NM_016128	22820		NM_016128	ENSG00000181789	COPG1	COPG	COPI coat complex subunit gamma 1	protein-coding
122761	chr19	50131571	50132030	+	0	NA	Intergenic	Intergenic	2064	NR_024230	100170217		NR_024230		SNAR-B2	-	small NF90 (ILF3) associated RNA B2	snRNA
108762	chr18	77126751	77127350	+	0	NA	intron (NM_001025100, intron 1 of 3)	L1MD2|LINE|L1	5733	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
59079	chr13	20924601	20925000	+	0	NA	Intergenic	Intergenic	-22026	NM_022459	64328		NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
223378	chr8	143886251	143886550	+	0	NA	Intergenic	Intergenic	-7933	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238578	chrX	153833101	153833530	+	0	NA	Intergenic	Intergenic	-2771	NM_032512	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
19464	chr1	174957601	174958050	+	0	NA	intron (NM_001366454, intron 4 of 8)	intron (NM_001366454, intron 4 of 8)	-3564	NR_121196	101928696		NR_121196	ENSG00000229531	RABGAP1L-AS1	-	RABGAP1L antisense RNA 1	ncRNA
125608	chr2	18387621	18387950	+	0	NA	Intergenic	Intergenic	172868	NM_020905	57665		NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14	protein-coding
106996	chr18	32038821	32039300	+	0	NA	intron (NM_017831, intron 2 of 5)	AluSx1|SINE|Alu	20235	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
120516	chr19	44844371	44845200	+	0	NA	Intergenic	CpG	-1512	NM_001042724	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
122490	chr19	49565321	49565800	+	0	NA	intron (NM_001270960, intron 1 of 8)	AluJb|SINE|Alu	14996	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
99713	chr17	50870951	50871980	+	0	NA	Intergenic	Intergenic	-3487	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
97850	chr17	44969471	44969630	+	0	NA	Intergenic	Intergenic	-1247	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
20459	chr1	198560151	198560680	+	0	NA	Intergenic	Intergenic	-19470	NM_133326	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
5809	chr1	26596171	26596950	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	42018	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
13610	chr1	116397921	116398180	+	0	NA	TTS (NR_027645)	TTS (NR_027645)	14680	NM_001160234	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
14860	chr1	146398821	146399670	+	0	NA	Intergenic	AluSx1|SINE|Alu	22438	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
186470	chr5	138026401	138026800	+	0	NA	intron (NM_016603, intron 1 of 22)	AluJb|SINE|Alu	-6174	NR_037900	100130172		NR_037900		FAM13B-AS1	-	FAM13B antisense RNA 1	ncRNA
120831	chr19	45502071	45502830	+	0	NA	TTS (NM_001080401)	TTS (NM_001080401)	3977	NM_001080401	147699		NM_178494	ENSG00000213889	PPM1N	-	protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)	protein-coding
73802	chr15	48645271	48646050	+	0	NA	promoter-TSS (NM_000138)	promoter-TSS (NM_000138)	49	NM_000138	2200		NM_000138	ENSG00000166147	FBN1	ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2	fibrillin 1	protein-coding
121613	chr19	47421851	47422500	+	0	NA	promoter-TSS (NM_001346148)	promoter-TSS (NM_001346148)	58	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
9611	chr1	52364171	52364730	+	0	NA	intron (NM_032449, intron 2 of 23)	intron (NM_032449, intron 2 of 23)	1755	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
12585	chr1	108955971	108957330	+	0	NA	intron (NM_001377462, intron 1 of 11)	AluSc8|SINE|Alu	-6202	NM_001278203	23155		NM_015127	ENSG00000121940	CLCC1	MCLC|RP32	chloride channel CLIC like 1	protein-coding
87688	chr16	74658301	74658850	+	0	NA	intron (NM_001370540, intron 3 of 13)	intron (NM_001370540, intron 3 of 13)	8302	NM_018124	55159		NM_018124	ENSG00000168411	RFWD3	FANCW|RNF201	ring finger and WD repeat domain 3	protein-coding
125958	chr2	25226321	25226580	+	0	NA	Intergenic	AluSx1|SINE|Alu	22137	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
140544	chr2	233256971	233257330	+	0	NA	intron (NM_198890, intron 2 of 13).2	AluYm1|SINE|Alu	5477	NM_017974	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
207756	chr7	49980551	49980650	+	0	NA	intron (NM_001159878, intron 7 of 7)	MSTB1|LTR|ERVL-MaLR	112646	NM_001159878	11055		NM_007009	ENSG00000042813	ZPBP	SPGF66|ZPBP1	zona pellucida binding protein	protein-coding
231662	chr9	131666451	131667280	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-15462	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
128784	chr2	62229501	62229700	+	0	NA	Intergenic	HAL1ME|LINE|L1	14079	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
70134	chr14	100270971	100271630	+	0	NA	intron (NM_003403, intron 2 of 4)	intron (NM_003403, intron 2 of 4)	-6057	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
9282	chr1	46405421	46405680	+	0	NA	intron (NM_001441, intron 4 of 14)	intron (NM_001441, intron 4 of 14)	11233	NM_001441	2166		NM_001441	ENSG00000117480	FAAH	FAAH-1|FAAH1|PSAB	fatty acid amide hydrolase	protein-coding
105221	chr17	82346251	82346350	+	0	NA	Intergenic	AluY|SINE|Alu	-12534	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
206146	chr7	27834051	27834350	+	0	NA	intron (NM_175061, intron 4 of 4)	L2a|LINE|L2	94105	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
229096	chr9	114377801	114378350	+	0	NA	intron (NM_001317952, intron 1 of 20)	intron (NM_001317952, intron 1 of 20)	9907	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
64506	chr14	24339551	24340580	+	0	NA	promoter-TSS (NM_006871)	promoter-TSS (NM_006871)	-74	NM_006871	11035		NM_006871	ENSG00000129465	RIPK3	RIP3	receptor interacting serine/threonine kinase 3	protein-coding
106640	chr18	22559271	22560080	+	0	NA	Intergenic	CpG	-141760	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
139370	chr2	221546821	221547150	+	0	NA	intron (NM_004438, intron 3 of 17)	intron (NM_004438, intron 3 of 17)	25319	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
112963	chr19	7829201	7831700	+	0	NA	intron (NM_145245, intron 1 of 18)	CpG	232	NM_145245	115704		NM_145245	ENSG00000142459	EVI5L	-	ecotropic viral integration site 5 like	protein-coding
121714	chr19	47604271	47605300	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3411	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
56327	chr12	112862921	112863180	+	0	NA	intron (NM_001347955, intron 4 of 20)	intron (NM_001347955, intron 4 of 20)	-43727	NM_002534	4938		NM_002534	ENSG00000089127	OAS1	E18/E16|IFI-4|IMD100|OIAS|OIASI	2'-5'-oligoadenylate synthetase 1	protein-coding
145424	chr20	43460001	43460300	+	0	NA	non-coding (NR_034009, exon 5 of 7)	non-coding (NR_034009, exon 5 of 7)	2254	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
139845	chr2	230451121	230451380	+	0	NA	intron (NM_001080391, intron 8 of 28)	L1MA8|LINE|L1	34494	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
89146	chr16	88520451	88520750	+	0	NA	intron (NM_153813, intron 4 of 9)	(GGTG)n|Simple_repeat|Simple_repeat	10453	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
224209	chr9	5562821	5563080	+	0	NA	intron (NM_025239, intron 5 of 6)	intron (NM_025239, intron 5 of 6)	52419	NM_025239	80380		NM_025239	ENSG00000197646	PDCD1LG2	B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2	programmed cell death 1 ligand 2	protein-coding
172665	chr4	2723101	2723300	+	0	NA	intron (NM_001256668, intron 19 of 19)	AluY|SINE|Alu	33136	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
37059	chr11	12279801	12280200	+	0	NA	Intergenic	Intergenic	-6900	NM_032867	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
164635	chr3	66456451	66457150	+	0	NA	intron (NM_001377345, intron 2 of 18)	intron (NM_001377345, intron 2 of 18)	43254	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
48033	chr12	6954711	6955600	+	0	NA	exon (NM_080549, exon 5 of 16)	exon (NM_080549, exon 5 of 16)	3799	NM_002831	5777		NM_002831	ENSG00000111679	PTPN6	HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1	protein tyrosine phosphatase non-receptor type 6	protein-coding
143799	chr20	32458021	32459080	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	24940	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
191205	chr6	5515971	5516330	+	0	NA	intron (NM_001374875, intron 4 of 6)	intron (NM_001374875, intron 4 of 6)	-58075	NR_125848	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
226522	chr9	71897201	71898030	+	0	NA	intron (NM_016014, intron 1 of 4)	intron (NM_016014, intron 1 of 4)	13578	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
153469	chr22	25410671	25411180	+	0	NA	Intergenic	Intergenic	-5517	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
5	chr1	15651	15830	+	0	NA	intron (NR_024540, intron 9 of 10)	intron (NR_024540, intron 9 of 10)	1696	NR_106918	102466751		NR_106918	ENSG00000278267	MIR6859-1	hsa-mir-6859-1	microRNA 6859-1	ncRNA
86516	chr16	67149171	67149330	+	0	NA	TTS (NM_001320542)	TTS (NM_001320542)	1748	NM_033309	84752		NM_033309	ENSG00000237172	B3GNT9	-	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding
92701	chr17	14116351	14116650	+	0	NA	intron (NM_001303, intron 4 of 6)	L2|LINE|L2	46996	NM_001303	1352		NM_001303	ENSG00000006695	COX10	MC4DN3	cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10	protein-coding
170580	chr3	186828521	186829430	+	0	NA	Intergenic	Intergenic	-3454	NR_125409	102724699		NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
229068	chr9	114350821	114351380	+	0	NA	intron (NM_001317952, intron 13 of 20)	intron (NM_001317952, intron 13 of 20)	21231	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
235041	chrX	40089951	40090500	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	7733	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
57530	chr12	122143571	122143730	+	0	NA	3' UTR (NM_014938, exon 17 of 17)	3' UTR (NM_014938, exon 17 of 17)	-24069	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
76441	chr15	74804201	74804900	+	0	NA	Intergenic	L2c|LINE|L2	-8285	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
209529	chr7	77123401	77123600	+	0	NA	intron (NM_020879, intron 1 of 18)	intron (NM_020879, intron 1 of 18)	885	NM_020879	57639		NM_020879	ENSG00000135205	CCDC146	MBO2	coiled-coil domain containing 146	protein-coding
1153	chr1	2197901	2198230	+	0	NA	exon (NM_001146310, exon 6 of 8)	exon (NM_001146310, exon 6 of 8)	-3290	NR_046427	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
139527	chr2	224575551	224575650	+	0	NA	intron (NM_003590, intron 1 of 15)	MIR|SINE|MIR	-5645	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
43219	chr11	75436651	75437230	+	0	NA	exon (NM_001351168, exon 17 of 18)	exon (NM_001351168, exon 17 of 18)	-6311	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
33287	chr10	114548651	114548950	+	0	NA	intron (NM_001322883, intron 4 of 20)	intron (NM_001322883, intron 4 of 20)	-21887	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
213703	chr7	140223851	140224550	+	0	NA	Intergenic	Intergenic	46939	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
194860	chr6	34526121	34526430	+	0	NA	5' UTR (NM_020804, exon 2 of 10)	5' UTR (NM_020804, exon 2 of 10)	11403	NM_001199583	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
170669	chr3	187714371	187714830	+	0	NA	intron (NR_034062, intron 1 of 2)	intron (NR_034062, intron 1 of 2)	-12043	NM_001004312	344892		NM_001004312	ENSG00000198471	RTP2	Z3CXXC2	receptor transporter protein 2	protein-coding
221730	chr8	127618551	127618650	+	0	NA	Intergenic	MIR3|SINE|MIR	115367	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
181829	chr5	52845171	52845330	+	0	NA	intron (NM_181501, intron 1 of 28)	intron (NM_181501, intron 1 of 28)	57334	NM_015946	53918		NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota mRNA surveillance and ribosome rescue factor	protein-coding
52443	chr12	55925721	55925980	+	0	NA	intron (NM_032345, intron 1 of 2)	intron (NM_032345, intron 1 of 2)	1275	NM_001143853	84305		NM_032345	ENSG00000170473	PYM1	PYM|WIBG	PYM homolog 1, exon junction complex associated factor	protein-coding
98319	chr17	46256201	46256650	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-31058	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
163178	chr3	50190771	50191650	+	0	NA	promoter-TSS (NM_000172)	promoter-TSS (NM_000172)	-400	NM_144499	2779		NM_000172	ENSG00000114349	GNAT1	CSNB1G|CSNBAD3|GBT1|GNATR|HG1F	G protein subunit alpha transducin 1	protein-coding
9954	chr1	54765951	54766250	+	0	NA	Intergenic	L2b|LINE|L2	-1577	NM_152268	25973		NM_152268	ENSG00000162396	PARS2	DEE75|EIEE75|MT-PRORS|proRS	prolyl-tRNA synthetase 2, mitochondrial	protein-coding
192422	chr6	24877221	24877480	+	0	NA	promoter-TSS (NM_015864)	promoter-TSS (NM_015864)	15	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
158645	chr3	4996871	4997500	+	0	NA	Intergenic	Intergenic	-17224	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
88790	chr16	87338471	87338630	+	0	NA	intron (NM_024735, intron 5 of 8)	intron (NM_024735, intron 5 of 8)	21041	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
32248	chr10	101845121	101845380	+	0	NA	TTS (NM_024541)	TTS (NM_024541)	-1330	NM_173197	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
151448	chr21	46154571	46154730	+	0	NA	intron (NM_206965, intron 1 of 13)	intron (NM_206965, intron 1 of 13)	929	NM_206965	10841		NM_006657	ENSG00000160282	FTCD	LCHC1	formimidoyltransferase cyclodeaminase	protein-coding
17237	chr1	156315971	156316130	+	0	NA	intron (NR_036564, intron 11 of 14)	MER2|DNA|TcMar-Tigger	-16743	NM_001004319	391104		NM_001004319	ENSG00000189030	VHLL	VHLP|VLP	VHL like	protein-coding
44751	chr11	112026951	112027480	+	0	NA	intron (NM_001372038, intron 2 of 11)	SVA_D|Retroposon|SVA	1807	NM_001372035	1737		NM_001931	ENSG00000150768	DLAT	DLTA|E2|PBC|PDC-E2|PDCE2	dihydrolipoamide S-acetyltransferase	protein-coding
213954	chr7	142720021	142720930	+	0	NA	intron (NM_001130026, intron 10 of 10)	MER68B|LTR|ERVL	-28997	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
223901	chr9	350171	350530	+	0	NA	intron (NM_203447, intron 14 of 47)	AluJr|SINE|Alu	77302	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
159473	chr3	14140751	14141430	+	0	NA	intron (NM_024334, intron 11 of 11)	intron (NM_024334, intron 11 of 11)	16038	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
81993	chr16	11902051	11902150	+	0	NA	intron (NM_001130007, intron 1 of 14)	AluSp|SINE|Alu	13856	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
133060	chr2	112274501	112276830	+	0	NA	promoter-TSS (NM_198581)	promoter-TSS (NM_198581)	68	NM_198581	376940		NM_198581	ENSG00000188177	ZC3H6	ZC3HDC6	zinc finger CCCH-type containing 6	protein-coding
212362	chr7	127629201	127629530	+	0	NA	Intergenic	Intergenic	-11223	NM_001366110	5078		NM_006193	ENSG00000106331	PAX4	KPD|MODY9	paired box 4	protein-coding
88765	chr16	86874171	86874330	+	0	NA	Intergenic	LTR16C|LTR|ERVL	152159	NR_135183	102724344		NR_135182	ENSG00000261175	LINC02188	-	long intergenic non-protein coding RNA 2188	ncRNA
106968	chr18	31938821	31939280	+	0	NA	intron (NM_014939, intron 1 of 28)	AluSc|SINE|Alu	4078	NM_014939	22878		NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex subunit 8	protein-coding
81822	chr16	11564821	11566080	+	0	NA	intron (NR_024320, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	20923	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
25430	chr10	6577351	6577450	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	2876	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
10686	chr1	74195171	74195480	+	0	NA	intron (NM_001105659, intron 1 of 7)	intron (NM_001105659, intron 1 of 7)	2851	NM_001322315	127255		NM_145258	ENSG00000162620	LRRIQ3	LRRC44	leucine rich repeats and IQ motif containing 3	protein-coding
223651	chr8	144355951	144356050	+	0	NA	promoter-TSS (NM_001280561)	promoter-TSS (NM_001280561)	-391	NM_001280561	340393		NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
115374	chr19	15238771	15238930	+	0	NA	exon (NM_058243, exon 19 of 20)	exon (NM_058243, exon 19 of 20)	-5803	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
213604	chr7	139395571	139395930	+	0	NA	intron (NM_016019, intron 2 of 9)	AluJb|SINE|Alu	31776	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
229172	chr9	114518451	114518850	+	0	NA	Intergenic	Intergenic	-13177	NM_015404	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
195466	chr6	37034071	37034230	+	0	NA	Intergenic	(CTGGC)n|Simple_repeat|Simple_repeat	28495	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
62291	chr13	98981651	98982300	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-3911	NM_001130050	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
44271	chr11	102272671	102272830	+	0	NA	Intergenic	L2a|LINE|L2	-44734	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
160705	chr3	32397501	32398180	+	0	NA	intron (NM_138410, intron 1 of 4)	MER41C|LTR|ERV1	5987	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
171260	chr3	195863971	195864430	+	0	NA	intron (NM_005781, intron 14 of 14)	intron (NM_005781, intron 14 of 14)	-3796	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
179596	chr4	185427121	185427630	+	0	NA	Intergenic	Intergenic	-1390	NR_144317	55325		NM_018359	ENSG00000109775	UFSP2	BHD|C4orf20|DEE106|SEMDDR	UFM1 specific peptidase 2	protein-coding
41246	chr11	65790121	65791100	+	0	NA	intron (NR_108085, intron 1 of 1)	intron (NR_108085, intron 1 of 1)	258	NR_108085	101927828		NR_108085	ENSG00000255120	OVOL1-AS1	-	OVOL1 antisense RNA 1	ncRNA
34699	chr10	133423001	133424180	+	0	NA	exon (NM_001012508, exon 2 of 2)	exon (NM_001012508, exon 2 of 2)	1027	NM_001012508	503542		NM_001012508	ENSG00000203772	SPRN	SHADOO|SHO|bA108K14.1	shadow of prion protein	protein-coding
114853	chr19	13852171	13852580	+	0	NA	Intergenic	AluJb|SINE|Alu	-9457	NR_036515	284454		NR_036515		MIR23AHG	Smyca	miR-23a/27a/24-2 cluster host gene	ncRNA
221366	chr8	123377571	123377880	+	0	NA	intron (NM_014109, intron 2 of 27)	Charlie29a|DNA|hAT-Charlie	18722	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
133119	chr2	112654151	112654250	+	0	NA	intron (NM_005415, intron 5 of 10)	intron (NM_005415, intron 5 of 10)	8261	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
40469	chr11	64230051	64231300	+	0	NA	TTS (NM_001128613)	TTS (NM_001128613)	243	NM_001307980	3338		NM_005528	ENSG00000110011	DNAJC4	DANJC4|HSPF2|MCG18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding
56097	chr12	110699401	110699600	+	0	NA	Intergenic	Intergenic	-9723	NM_001256413	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
203117	chr6	166624401	166624780	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	2661	NM_021135	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
174805	chr4	48116651	48116950	+	0	NA	intron (NM_003328, intron 1 of 14)	LTR33|LTR|ERVL	17450	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
176944	chr4	103017271	103017430	+	0	NA	TTS (NM_001370201)	TTS (NM_001370201)	2355	NR_047515	150159		NM_139173	ENSG00000164037	SLC9B1	NHA1|NHEDC1	solute carrier family 9 member B1	protein-coding
215326	chr7	157354451	157355080	+	0	NA	intron (NM_001363676, intron 1 of 6)	L2|LINE|L2	17761	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
136177	chr2	174486501	174488200	+	0	NA	promoter-TSS (NM_001267051)	promoter-TSS (NM_001267051)	-262	NM_001267051	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
148677	chr21	6143771	6144130	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	32819	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
206179	chr7	28125921	28126180	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-54407	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
98117	chr17	45782951	45783550	+	0	NA	intron (NM_001303016, intron 3 of 12)	intron (NM_001303016, intron 3 of 12)	-1030	NM_001303020	1394		NM_004382	ENSG00000120088	CRHR1	CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRHR|CRHR1L	corticotropin releasing hormone receptor 1	protein-coding
124765	chr2	7037801	7038000	+	0	NA	intron (NM_001349181, intron 8 of 9)	intron (NM_001349181, intron 8 of 9)	39980	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
161198	chr3	39146671	39147600	+	0	NA	exon (NM_001320559, exon 1 of 5)	exon (NM_001320559, exon 1 of 5)	295	NM_001320559	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
30174	chr10	74216671	74216830	+	0	NA	intron (NM_001202449, intron 2 of 9)	intron (NM_001202449, intron 2 of 9)	39987	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
72616	chr15	37110901	37111280	+	0	NA	Intergenic	Intergenic	-9779	NM_001220482	4212		NM_002399	ENSG00000134138	MEIS2	CPCMR|HsT18361|MRG1	Meis homeobox 2	protein-coding
26184	chr10	14538151	14538450	+	0	NA	intron (NM_031453, intron 2 of 4)	L1ME3A|LINE|L1	242	NM_001320740	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
198533	chr6	106538101	106538950	+	0	NA	intron (NM_001371242, intron 8 of 21)	Tigger15a|DNA|TcMar-Tigger	26670	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
177103	chr4	108082351	108082650	+	0	NA	intron (NM_016269, intron 5 of 11)	intron (NM_016269, intron 5 of 11)	77836	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
163062	chr3	49941451	49941900	+	0	NA	intron (NR_146071, intron 1 of 15)	intron (NR_146071, intron 1 of 15)	1525	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
162631	chr3	48789451	48789550	+	0	NA	intron (NM_001321989, intron 3 of 9)	AluSg|SINE|Alu	58374	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
32951	chr10	110414221	110415980	+	0	NA	Intergenic	Zaphod3|DNA|hAT-Tip100	-82807	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
61166	chr13	49098151	49098600	+	0	NA	intron (NM_001079673, intron 3 of 25)	intron (NM_001079673, intron 3 of 25)	-11942	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
128298	chr2	54620921	54621180	+	0	NA	intron (NM_178313, intron 6 of 30)	intron (NM_178313, intron 6 of 30)	62656	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
174661	chr4	40927551	40928100	+	0	NA	intron (NM_173075, intron 9 of 16)	intron (NM_173075, intron 9 of 16)	-70633	NM_001166054	323		NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
62562	chr13	99956571	99958000	+	0	NA	promoter-TSS (NR_120421)	promoter-TSS (NR_120421)	-120	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
5832	chr1	26699651	26700350	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	3985	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
7784	chr1	36231151	36231450	+	0	NA	intron (NM_001321471, intron 2 of 12)	intron (NM_001321471, intron 2 of 12)	6857	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
93015	chr17	17232071	17232230	+	0	NA	intron (NM_144606, intron 2 of 7)	intron (NM_144606, intron 2 of 7)	5018	NM_001353231	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
116745	chr19	18473721	18474050	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	-35752	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
71414	chr14	105561071	105561230	+	0	NA	Intergenic	(CCCTGT)n|Simple_repeat|Simple_repeat	29295	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
84574	chr16	30627101	30627300	+	0	NA	Intergenic	AluSg|SINE|Alu	-16425	NR_073481	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
117155	chr19	19324021	19324880	+	0	NA	intron (NM_015329, intron 1 of 18)	intron (NM_015329, intron 1 of 18)	3621	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
14529	chr1	144850121	144850650	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	132214	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
31224	chr10	91796221	91797130	+	0	NA	intron (NR_108071, intron 1 of 1)	Tigger1|DNA|TcMar-Tigger	1521	NR_108070	100507633		NR_108070	ENSG00000228701	TNKS2-DT	TNKS2-AS1	TNKS2 divergent transcript	ncRNA
141779	chr2	242086221	242086950	+	0	NA	Intergenic	Intergenic	-2048	NR_130702	728323		NR_024437		LINC01881	-	long intergenic non-protein coding RNA 1881	ncRNA
79550	chr16	961021	961280	+	0	NA	intron (NM_001352017, intron 1 of 11)	CpG	9834	NM_022773	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
128266	chr2	54579021	54579300	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	20766	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
220201	chr8	96145271	96146300	+	0	NA	intron (NM_001001557, intron 1 of 1)	(GGC)n|Simple_repeat|Simple_repeat	15021	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
210254	chr7	99394771	99395230	+	0	NA	TTS (NM_005720)	TTS (NM_005720)	13597	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
105843	chr18	2998171	2998330	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	13697	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
202556	chr6	158659171	158659550	+	0	NA	intron (NM_001242395, intron 2 of 15)	AluSq2|SINE|Alu	-4043	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
56129	chr12	110937021	110937530	+	0	NA	non-coding (NR_036513, exon 2 of 2)	non-coding (NR_036513, exon 2 of 2)	673	NR_036513	100131138		NR_036513	ENSG00000185847	LINC01405	-	long intergenic non-protein coding RNA 1405	ncRNA
190184	chr5	178202001	178202400	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-2333	NM_004499	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
13041	chr1	111229051	111230300	+	0	NA	promoter-TSS (NM_001025199)	promoter-TSS (NM_001025199)	-61	NM_001025199	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
164552	chr3	63974401	63975050	+	0	NA	intron (NM_001128149, intron 1 of 8)	(TGT)n|Simple_repeat|Simple_repeat	6931	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
78502	chr15	92928671	92929380	+	0	NA	intron (NM_001042572, intron 4 of 12)	intron (NM_001042572, intron 4 of 12)	24626	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
91607	chr17	5329271	5329430	+	0	NA	intron (NM_001083585, intron 2 of 16)	AluSq|SINE|Alu	47066	NM_001083585	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
45997	chr11	121537921	121538380	+	0	NA	intron (NM_003105, intron 12 of 47)	L3|LINE|CR1	-56361	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
232443	chr9	136114921	136115530	+	0	NA	3' UTR (NM_001256526, exon 2 of 2)	3' UTR (NM_001256526, exon 2 of 2)	-2567	NR_165242	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
119275	chr19	39541251	39541350	+	0	NA	Intergenic	Intergenic	-1139	NM_153232	163126		NM_153232	ENSG00000176396	EID2	CRI2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
4541	chr1	22005121	22005600	+	0	NA	intron (NM_005747, intron 2 of 7)	MER91C|DNA|hAT-Tip100	3703	NM_005747	10136		NM_005747	ENSG00000142789	CELA3A	ELA3|ELA3A	chymotrypsin like elastase 3A	protein-coding
942	chr1	1740221	1740680	+	0	NA	intron (NM_182838, intron 1 of 5)	AluY|SINE|Alu	5549	NM_182838	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
127561	chr2	42362951	42363050	+	0	NA	intron (NM_001319036, intron 1 of 3)	AluJb|SINE|Alu	-1757	NM_001319040	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
220080	chr8	93994651	93994950	+	0	NA	Intergenic	MIR|SINE|MIR	77853	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
179568	chr4	185212271	185213130	+	0	NA	intron (NM_001378032, intron 1 of 19)	intron (NM_001378032, intron 1 of 19)	3143	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
156981	chr22	42497001	42497600	+	0	NA	Intergenic	AluSx|SINE|Alu	-3279	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
162709	chr3	49001471	49001830	+	0	NA	intron (NM_177939, intron 3 of 8)	intron (NM_177939, intron 3 of 8)	-5741	NM_018031	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
227252	chr9	89356471	89356830	+	0	NA	intron (NM_001282690, intron 14 of 16)	AluJo|SINE|Alu	37799	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
195498	chr6	37175101	37175400	+	0	NA	3' UTR (NM_002648, exon 6 of 6)	3' UTR (NM_002648, exon 6 of 6)	5098	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
172307	chr4	1584671	1585030	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	99141	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
192950	chr6	27814021	27815630	+	0	NA	promoter-TSS (NM_021066)	promoter-TSS (NM_021066)	-48	NM_021066	8331		NM_021066	ENSG00000276368	H2AC14	H2A/E|H2AFE|HIST1H2AJ|dJ160A22.4	H2A clustered histone 14	protein-coding
197315	chr6	72741101	72741300	+	0	NA	intron (NM_001160133, intron 1 of 14)	intron (NM_001160133, intron 1 of 14)	110705	NR_120503	100507381		NR_120503		KCNQ5-IT1	-	KCNQ5 intronic transcript 1	ncRNA
29704	chr10	72067471	72067730	+	0	NA	intron (NM_014767, intron 8 of 11)	intron (NM_014767, intron 8 of 11)	20951	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
200628	chr6	136797421	136797500	+	0	NA	Intergenic	L1PA16|LINE|L1	-4983	NM_005923	4217		NM_005923	ENSG00000197442	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
124839	chr2	7740151	7740780	+	0	NA	Intergenic	Intergenic	159190	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
24761	chr1	248839901	248840100	+	0	NA	intron (NM_024836, intron 1 of 3)	AluSz|SINE|Alu	1776	NM_024836	79894		NM_024836	ENSG00000171161	ZNF672	-	zinc finger protein 672	protein-coding
169372	chr3	160436221	160437380	+	0	NA	3' UTR (NM_173084, exon 3 of 3)	3' UTR (NM_173084, exon 3 of 3)	12986	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
85265	chr16	48542171	48542360	+	0	NA	3' UTR (NM_153029, exon 7 of 7)	3' UTR (NM_153029, exon 7 of 7)	67915	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
58142	chr12	124908421	124909550	+	0	NA	Intergenic	L1ME4b|LINE|L1	5665	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
231916	chr9	133101971	133102450	+	0	NA	intron (NM_001271775, intron 14 of 17)	intron (NM_001271775, intron 14 of 17)	19030	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
176022	chr4	82348551	82348850	+	0	NA	Intergenic	Intergenic	25291	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
97418	chr17	43425701	43425900	+	0	NA	Intergenic	AluSx3|SINE|Alu	-18907	NR_146952	106660605		NR_146952	ENSG00000267151	MIR2117HG	-	MIR2117 host gene	ncRNA
219451	chr8	73012421	73012680	+	0	NA	intron (NM_003218, intron 1 of 8)	AluY|SINE|Alu	3686	NM_017489	7013		NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding
120337	chr19	43554701	43555850	+	0	NA	intron (NM_006297, intron 3 of 16)	LTR50|LTR|ERVL	20252	NM_006297	7515		NM_006297	ENSG00000073050	XRCC1	RCC|SCAR26	X-ray repair cross complementing 1	protein-coding
229404	chr9	121195921	121196700	+	0	NA	intron (NM_016322, intron 1 of 7)	intron (NM_016322, intron 1 of 7)	-5173	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
55386	chr12	104420871	104421230	+	0	NA	Intergenic	MER4CL34|LTR|ERV1	-35898	NM_018413	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
221398	chr8	123504551	123505300	+	0	NA	intron (NM_148177, intron 4 of 5)	intron (NM_148177, intron 4 of 5)	27218	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
70515	chr14	102307901	102308300	+	0	NA	Intergenic	Intergenic	-2936	NR_148555	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
192600	chr6	26017221	26018000	+	0	NA	exon (NM_005325, exon 1 of 1)	exon (NM_005325, exon 1 of 1)	177	NM_005325	3024		NM_005325	ENSG00000124610	H1-1	H1.1|H1A|H1F1|HIST1|HIST1H1A	H1.1 linker histone, cluster member	protein-coding
238986	chrX	155767321	155767880	+	0	NA	promoter-TSS (NM_005840)	promoter-TSS (NM_005840)	-135	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
63236	chr13	113929971	113930330	+	0	NA	Intergenic	Intergenic	-1159	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
52819	chr12	57004701	57005280	+	0	NA	intron (NM_014830, intron 1 of 1)	intron (NM_014830, intron 1 of 1)	1556	NM_014830	9880		NM_014830	ENSG00000166860	ZBTB39	ZNF922	zinc finger and BTB domain containing 39	protein-coding
161166	chr3	39102301	39102780	+	0	NA	intron (NM_001278789, intron 1 of 6)	intron (NM_001278789, intron 1 of 6)	5087	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
146980	chr20	53001721	53002300	+	0	NA	intron (NM_173485, intron 1 of 2)	intron (NM_173485, intron 1 of 2)	29652	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
110057	chr19	1484621	1484880	+	0	NA	intron (NM_017573, intron 8 of 14)	AluSx1|SINE|Alu	-5535	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
31712	chr10	97672921	97673180	+	0	NA	intron (NM_018425, intron 8 of 8)	AluSz|SINE|Alu	14191	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
85290	chr16	48612711	48614080	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-3215	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
170819	chr3	189563951	189564050	+	0	NA	Intergenic	Intergenic	-32746	NM_001329964	8626		NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
78198	chr15	90572701	90573350	+	0	NA	intron (NM_001042574, intron 2 of 14)	L1MB2|LINE|L1	43102	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
188520	chr5	155762171	155762530	+	0	NA	Intergenic	Intergenic	-564814	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
95757	chr17	38609801	38610000	+	0	NA	Intergenic	L2c|LINE|L2	-3948	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
137332	chr2	196131301	196131900	+	0	NA	Intergenic	LTR25-int|LTR|ERV1	39978	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
53237	chr12	62438071	62438430	+	0	NA	Intergenic	Intergenic	-28576	NM_001278472	23041		NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
85491	chr16	50743621	50744230	+	0	NA	intron (NM_001378747, intron 2 of 17)	intron (NM_001378747, intron 2 of 17)	1510	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
81499	chr16	8952471	8952730	+	0	NA	intron (NM_003470, intron 1 of 30)	MLT1D|LTR|ERVL-MaLR	-2946	NR_135826	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
181074	chr5	36724801	36725280	+	0	NA	Intergenic	Intergenic	118434	NM_004172	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
223915	chr9	468621	469200	+	0	NA	Intergenic	Intergenic	-1381	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
85805	chr16	56973071	56973430	+	0	NA	intron (NM_001286085, intron 8 of 14)	intron (NM_001286085, intron 8 of 14)	11300	NM_000078	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
144040	chr20	33557821	33558080	+	0	NA	intron (NM_001032999, intron 1 of 10)	AluSg|SINE|Alu	-4415	NM_005093	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
65387	chr14	50768271	50768630	+	0	NA	intron (NM_020921, intron 12 of 30)	intron (NM_020921, intron 12 of 30)	-53347	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
160442	chr3	28345951	28346530	+	0	NA	intron (NM_001271650, intron 1 of 8)	MIR3|SINE|MIR	-2481	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
194610	chr6	33532851	33534250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	46726	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
164719	chr3	68086171	68086330	+	0	NA	intron (NM_213609, intron 2 of 4)	intron (NM_213609, intron 2 of 4)	82003	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
23678	chr1	231376921	231377380	+	0	NA	intron (NM_001377261, intron 1 of 3)	MIR|SINE|MIR	38857	NM_032018	83932		NM_032018	ENSG00000010072	SPRTN	C1orf124|DVC1|PRO4323|spartan	SprT-like N-terminal domain	protein-coding
230257	chr9	127904651	127906100	+	0	NA	promoter-TSS (NR_104629)	promoter-TSS (NR_104629)	-27	NR_104629	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
100259	chr17	59440421	59441250	+	0	NA	intron (NR_110813, intron 2 of 2)	intron (NR_110813, intron 2 of 2)	74752	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
32576	chr10	103451901	103452800	+	0	NA	promoter-TSS (NM_015916)	promoter-TSS (NM_015916)	20	NR_046344	51063		NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator family member 2	protein-coding
78891	chr15	100919021	100919850	+	0	NA	promoter-TSS (NR_135827)	promoter-TSS (NR_135827)	78	NM_024652	79705		NM_024652	ENSG00000154237	LRRK1	OSMD|RIPK6|Roco1	leucine rich repeat kinase 1	protein-coding
78405	chr15	92021771	92022030	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	167596	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
31172	chr10	91165471	91165630	+	0	NA	intron (NM_001257101, intron 1 of 9)	AluJb|SINE|Alu	2538	NM_001257101	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
236428	chrX	71302571	71302930	+	0	NA	intron (NM_012278, intron 4 of 10)	intron (NM_012278, intron 4 of 10)	1000	NM_001303277	26548		NM_012278	ENSG00000147166	ITGB1BP2	CHORDC3|ITGB1BP|MELUSIN|MSTP015	integrin subunit beta 1 binding protein 2	protein-coding
154041	chr22	30560671	30560950	+	0	NA	promoter-TSS (NM_001318113)	promoter-TSS (NM_001318113)	-34	NM_001318114	9514		NM_004861	ENSG00000128242	GAL3ST1	CST	galactose-3-O-sulfotransferase 1	protein-coding
167766	chr3	132667671	132668130	+	0	NA	intron (NM_024818, intron 3 of 11)	intron (NM_024818, intron 3 of 11)	7203	NM_001320210	79876		NM_024818	ENSG00000081307	UBA5	DEE44|EIEE44|SCAR24|THIFP1|UBE1DC1	ubiquitin like modifier activating enzyme 5	protein-coding
187045	chr5	139851621	139851880	+	0	NA	exon (NM_004883, exon 9 of 10)	exon (NM_004883, exon 9 of 10)	55942	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
205346	chr7	12690001	12690600	+	0	NA	3' UTR (NM_001037164, exon 2 of 2)	3' UTR (NM_001037164, exon 2 of 2)	2667	NM_005738	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
197586	chr6	79964551	79965000	+	0	NA	Intergenic	LTR43B|LTR|ERV1	-17222	NM_022726	6785		NM_022726	ENSG00000118402	ELOVL4	ADMD|CT118|ISQMR|SCA34|STGD2|STGD3	ELOVL fatty acid elongase 4	protein-coding
192264	chr6	20366311	20367100	+	0	NA	Intergenic	HAL1b|LINE|L1	-35174	NM_001949	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
28731	chr10	61939901	61940550	+	0	NA	exon (NM_032199, exon 3 of 10)	exon (NM_032199, exon 3 of 10)	38526	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
165522	chr3	100403371	100403530	+	0	NA	intron (NM_001085451, intron 1 of 3)	MIR1_Amn|SINE|MIR	1911	NM_001085451	348801		NM_001085451	ENSG00000206535	LNP1	NP3	leukemia NUP98 fusion partner 1	protein-coding
9625	chr1	52415321	52416400	+	0	NA	intron (NM_032864, intron 9 of 9)	AluY|SINE|Alu	11258	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
75376	chr15	65639651	65640100	+	0	NA	intron (NM_004727, intron 4 of 9)	intron (NM_004727, intron 4 of 9)	-3004	NM_001254740	9187		NM_004727	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 member 1	protein-coding
60853	chr13	45511521	45512380	+	0	NA	intron (NM_031431, intron 16 of 22)	intron (NM_031431, intron 16 of 22)	47011	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
220493	chr8	100527001	100527800	+	0	NA	intron (NM_001270377, intron 4 of 4)	intron (NM_001270377, intron 4 of 4)	32359	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
174317	chr4	38656201	38656500	+	0	NA	intron (NR_026804, intron 1 of 7)	intron (NR_026804, intron 1 of 7)	-7849	NM_016531	51274		NM_016531	ENSG00000109787	KLF3	BKLF	KLF transcription factor 3	protein-coding
74349	chr15	58621251	58621750	+	0	NA	exon (NM_001110, exon 11 of 16)	exon (NM_001110, exon 11 of 16)	72107	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
37580	chr11	19259701	19260100	+	0	NA	Intergenic	Intergenic	-18245	NM_001256372	79733		NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
198000	chr6	90080631	90081680	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	186686	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
97385	chr17	43356751	43357530	+	0	NA	Intergenic	LTR18B|LTR|ERVL	31758	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
1810	chr1	6210821	6211400	+	0	NA	exon (NM_207396, exon 12 of 18)	exon (NM_207396, exon 12 of 18)	4991	NM_207396	388591		NM_173795	ENSG00000158286	RNF207	C1orf188	ring finger protein 207	protein-coding
130054	chr2	74452101	74453130	+	0	NA	Intergenic	Intergenic	-2408	NR_037849	100532735		NR_037849	ENSG00000274049	INO80B-WBP1	-	INO80B-WBP1 readthrough (NMD candidate)	ncRNA
52949	chr12	57455871	57456550	+	0	NA	exon (NM_031479, exon 2 of 2)	exon (NM_031479, exon 2 of 2)	903	NM_031479	83729		NM_031479	ENSG00000139269	INHBE	-	inhibin subunit beta E	protein-coding
153927	chr22	30328371	30329050	+	0	NA	Intergenic	Intergenic	-1769	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
191211	chr6	5522171	5522330	+	0	NA	intron (NM_001374875, intron 4 of 6)	intron (NM_001374875, intron 4 of 6)	-64175	NR_125848	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
161007	chr3	37321551	37321650	+	0	NA	intron (NM_001172713, intron 13 of 22)	intron (NM_001172713, intron 13 of 22)	-64669	NM_178344	339883		NM_178339	ENSG00000198590	APRG1	C3orf35	APRG1 tumor suppressor candidate	ncRNA
23367	chr1	228161601	228161800	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	3148	NR_103539	574432		NR_103539	ENSG00000203684	IBA57-DT	C1orf148|IBA57-AS1	IBA57 divergent transcript	ncRNA
13530	chr1	114979321	114979730	+	0	NA	intron (NM_003176, intron 28 of 31)	intron (NM_003176, intron 28 of 31)	-50301	NM_000549	7252		NM_000549	ENSG00000134200	TSHB	TSH-B|TSH-BETA	thyroid stimulating hormone subunit beta	protein-coding
218151	chr8	41835771	41835930	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	-38228	NM_020477	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
183406	chr5	77936071	77936300	+	0	NA	intron (NR_105012, intron 1 of 1)	intron (NR_105012, intron 1 of 1)	-22062	NR_105013	101929154		NR_105012	ENSG00000287162	LOC101929154	-	uncharacterized LOC101929154	ncRNA
228104	chr9	96491221	96492150	+	0	NA	TTS (NM_014282)	TTS (NM_014282)	41516	NM_014282	22927		NM_014282	ENSG00000130956	HABP4	IHABP-4|IHABP4|Ki-1/57|SERBP1L	hyaluronan binding protein 4	protein-coding
67755	chr14	73717751	73718180	+	0	NA	3' UTR (NM_194278, exon 12 of 12)	3' UTR (NM_194278, exon 12 of 12)	-3581	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
164687	chr3	67641551	67641850	+	0	NA	intron (NM_001177599, intron 1 of 10)	MLT1C|LTR|ERVL-MaLR	12912	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
176208	chr4	83957571	83957750	+	0	NA	Intergenic	L1PA3|LINE|L1	341509	NR_125909	101928978		NR_125909	ENSG00000250546	LINC02994	-	long intergenic non-protein coding RNA 2994	ncRNA
10661	chr1	70487901	70488230	+	0	NA	Intergenic	L1M1|LINE|L1	76797	NM_001902	1491		NM_001902	ENSG00000116761	CTH	CGL|CSE	cystathionine gamma-lyase	protein-coding
239075	chrY	7334571	7335030	+	0	NA	intron (NR_028062, intron 3 of 7)	intron (NR_028062, intron 3 of 7)	60828	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
198281	chr6	99618721	99619180	+	0	NA	Intergenic	CpG	12117	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
149259	chr21	25977101	25977300	+	0	NA	intron (NM_001385253, intron 8 of 16)	intron (NM_001385253, intron 8 of 16)	163190	NM_001136016	351		NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|alpha-sAPP|preA4	amyloid beta precursor protein	protein-coding
87332	chr16	70291721	70291980	+	0	NA	intron (NM_001257174, intron 1 of 9)	intron (NM_001257174, intron 1 of 9)	2083	NM_001257174	11269		NM_007242	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD-box helicase 19B	protein-coding
90321	chr17	1118921	1119330	+	0	NA	intron (NM_001322840, intron 2 of 22).2	intron (NM_001322840, intron 2 of 22).2	7447	NM_001322840	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
30222	chr10	74900001	74900680	+	0	NA	intron (NM_012330, intron 3 of 17).2	intron (NM_012330, intron 3 of 17).2	-12446	NR_134476								
116402	chr19	17968151	17968250	+	0	NA	intron (NM_002248, intron 2 of 10)	intron (NM_002248, intron 2 of 10)	16898	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
70412	chr14	102015151	102015450	+	0	NA	exon (NM_001376, exon 35 of 78)	exon (NM_001376, exon 35 of 78)	50727	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
143508	chr20	31516351	31516450	+	0	NA	intron (NM_178580, intron 1 of 12)	L2c|LINE|L2	1958	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
210960	chr7	101465451	101465950	+	0	NA	intron (NM_133457, intron 3 of 12)	AluSx3|SINE|Alu	102825	NM_001278563	136227		NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen type XXVI alpha 1 chain	protein-coding
207980	chr7	55402271	55402630	+	0	NA	intron (NM_018697, intron 5 of 8)	SVA_D|Retroposon|SVA	37113	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
96023	chr17	39243671	39244130	+	0	NA	intron (NR_164152, intron 5 of 9)	intron (NR_164152, intron 5 of 9)	6130	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
106725	chr18	23504721	23505080	+	0	NA	intron (NM_001318707, intron 2 of 16)	MER94|DNA|hAT-Blackjack	1389	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
237933	chrX	132216301	132217700	+	0	NA	non-coding (NR_073150, exon 4 of 7)	non-coding (NR_073150, exon 4 of 7)	1033	NM_021183	57826		NM_021183	ENSG00000123728	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
99008	chr17	48814371	48814980	+	0	NA	intron (NM_001366314, intron 1 of 13)	intron (NM_001366314, intron 1 of 13)	2415	NM_001366314	284076		NM_173623	ENSG00000170703	TTLL6	TTL.6	tubulin tyrosine ligase like 6	protein-coding
168304	chr3	141544671	141545700	+	0	NA	intron (NM_006506, intron 5 of 23)	L1MDa|LINE|L1	58158	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
115823	chr19	16473551	16473850	+	0	NA	Intergenic	AluSq|SINE|Alu	-1688	NR_047665	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
26685	chr10	22629251	22629350	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	84808	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
121863	chr19	48259571	48260440	+	0	NA	Intergenic	LTR13|LTR|ERVK	-4059	NM_001351787	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
169695	chr3	172055351	172056030	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	15159	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
116174	chr19	17419571	17421150	+	0	NA	exon (NM_138401, exon 2 of 9)	exon (NM_138401, exon 2 of 9)	313	NM_138401	93343		NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
171703	chr3	197808451	197809180	+	0	NA	intron (NM_001365715, intron 1 of 20)	AluJb|SINE|Alu	17561	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
135871	chr2	170972001	170972200	+	0	NA	Intergenic	AluSc|SINE|Alu	42847	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
24053	chr1	235299921	235301000	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-26756	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
168031	chr3	136900901	136901330	+	0	NA	intron (NM_001291999, intron 1 of 3)	L1MA4A|LINE|L1	-29387	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
145262	chr20	40619751	40619850	+	0	NA	Intergenic	L1PA3|LINE|L1	69436	NM_005461	9935		NM_005461	ENSG00000204103	MAFB	DURS3|KRML|MCTO	MAF bZIP transcription factor B	protein-coding
111755	chr19	4372301	4372500	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	28147	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
18728	chr1	167466451	167466950	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	51829	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
43159	chr11	75342351	75342650	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	-7314	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
147179	chr20	56468021	56469550	+	0	NA	intron (NM_016407, intron 1 of 8)	intron (NM_016407, intron 1 of 8)	158	NM_016407	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
51167	chr12	50211421	50213130	+	0	NA	intron (NM_001113547, intron 1 of 7)	intron (NM_001113547, intron 1 of 7)	10383	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
224036	chr9	3482471	3483400	+	0	NA	intron (NM_001282116, intron 1 of 16)	intron (NM_001282116, intron 1 of 16)	6499	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
214356	chr7	149599671	149600080	+	0	NA	intron (NR_027788, intron 3 of 7)	AluSq2|SINE|Alu	24915	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
175718	chr4	77433301	77433600	+	0	NA	Intergenic	Intergenic	-78303	NM_006419	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
113183	chr19	8406071	8407100	+	0	NA	Intergenic	MIRb|SINE|MIR	-6718	NM_001005415	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
202471	chr6	158231451	158233780	+	0	NA	Intergenic	CpG	64265	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
16309	chr1	154179071	154179530	+	0	NA	intron (NM_001364680, intron 2 of 8)	intron (NM_001364680, intron 2 of 8)	-1096	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
228472	chr9	99867771	99868130	+	0	NA	Intergenic	Intergenic	38651	NR_038853	441461		NR_038853		STX17-DT	STX17-AS1	STX17 divergent transcript	ncRNA
150076	chr21	37403401	37403800	+	0	NA	intron (NM_001347723, intron 1 of 10)	AluJr|SINE|Alu	-15305	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
180147	chr5	1363021	1363280	+	0	NA	TTS (NR_125810)	TTS (NR_125810)	16923	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
219576	chr8	79760201	79760400	+	0	NA	Intergenic	L2a|LINE|L2	6175	NM_001282851	23462		NM_012258	ENSG00000164683	HEY1	BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1	hes related family bHLH transcription factor with YRPW motif 1	protein-coding
188377	chr5	152026451	152027150	+	0	NA	intron (NR_109876, intron 1 of 2)	L1PA7|LINE|L1	67902	NR_109876	101927115		NR_109876	ENSG00000254226	LINC01933	CTB-12O2.1	long intergenic non-protein coding RNA 1933	ncRNA
18183	chr1	160828071	160828430	+	0	NA	TTS (NM_002348)	TTS (NM_002348)	32076	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
174084	chr4	27084801	27085130	+	0	NA	Intergenic	Intergenic	-132514	NR_125921	101929199		NR_125921	ENSG00000249699	LINC02261	-	long intergenic non-protein coding RNA 2261	ncRNA
1161	chr1	2207171	2207330	+	0	NA	intron (NM_001146310, intron 1 of 7)	intron (NM_001146310, intron 1 of 7)	483	NM_001146310	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
172815	chr4	3045101	3046180	+	0	NA	Intergenic	MER72|LTR|ERV1	28874	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
62465	chr13	99365821	99366280	+	0	NA	intron (NR_026644, intron 7 of 8)	L1ME3Cz|LINE|L1	9919	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
197807	chr6	87701301	87703230	+	0	NA	promoter-TSS (NM_018064)	promoter-TSS (NM_018064)	-32	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
181938	chr5	54988351	54988450	+	0	NA	Intergenic	Intergenic	-2807	NM_001135604	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
49874	chr12	38350821	38351430	+	0	NA	Intergenic	Intergenic	34351	NM_001013620	144245		NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10 alpha-1,2-glucosyltransferase B	protein-coding
171604	chr3	197300301	197300500	+	0	NA	intron (NR_038289, intron 2 of 2)	intron (NR_038289, intron 2 of 2)	-1079	NM_001366203	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
210648	chr7	100474271	100474850	+	0	NA	intron (NM_001303043, intron 2 of 4)	intron (NM_001303043, intron 2 of 4)	4654	NM_030935	81628		NM_030935	ENSG00000166925	TSC22D4	SPACDR|THG-1|THG1|TILZ2	TSC22 domain family member 4	protein-coding
238882	chrX	154549021	154549500	+	0	NA	intron (NM_003639, intron 1 of 9)	AluSc|SINE|Alu	1413	NM_003639	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
2422	chr1	9594321	9594780	+	0	NA	intron (NM_001130924, intron 1 of 10)	intron (NM_001130924, intron 1 of 10)	5639	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
77497	chr15	84634801	84635000	+	0	NA	intron (NR_004859, intron 2 of 4)	intron (NR_004859, intron 2 of 4)	3440	NR_003654	54581		NM_022050		SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
148721	chr21	6875171	6875430	+	0	NA	intron (NR_146656, intron 3 of 4)	intron (NR_146656, intron 3 of 4)	16129	NR_107036	102466252		NR_107036	ENSG00000284550	MIR8069-1	MIR8069|hsa-mir-8069|hsa-mir-8069-1	microRNA 8069-1	ncRNA
78356	chr15	91309021	91309650	+	0	NA	Intergenic	L1ME3A|LINE|L1	-154004	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
20953	chr1	202304351	202304450	+	0	NA	intron (NM_021636, intron 10 of 17)	intron (NM_021636, intron 10 of 17)	37536	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
66096	chr14	59485651	59485750	+	0	NA	intron (NM_001284202, intron 2 of 7)	AluSg|SINE|Alu	1183	NM_016475	51528		NM_016475	ENSG00000050130	JKAMP	C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP	JNK1/MAPK8 associated membrane protein	protein-coding
7791	chr1	36241701	36241900	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluSx1|SINE|Alu	17357	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
102255	chr17	75268101	75268680	+	0	NA	intron (NM_001363806, intron 2 of 4)	AluSx|SINE|Alu	1855	NM_001242500	57409		NM_020679	ENSG00000125457	MIF4GD	AD023|MIFD|SLIP1	MIF4G domain containing	protein-coding
69584	chr14	97198951	97199050	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	44143	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
142077	chr20	2451871	2452480	+	0	NA	Intergenic	LTR41|LTR|ERVL	10872	NR_003684	100113378		NR_003684		SNORD119	-	small nucleolar RNA, C/D box 119	snoRNA
30714	chr10	81308051	81308150	+	0	NA	Intergenic	AluYe5|SINE|Alu	-567094	NM_001370082	10718		NM_001010848	ENSG00000185737	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding
62490	chr13	99415501	99416230	+	0	NA	Intergenic	Intergenic	59734	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
44470	chr11	105000671	105001200	+	0	NA	intron (NR_036562, intron 2 of 6)	L2a|LINE|L2	22233	NM_001136110	838		NM_004347	ENSG00000137757	CASP5	ICE(rel)III|ICEREL-III|ICH-3	caspase 5	protein-coding
167798	chr3	133493201	133493430	+	0	NA	Intergenic	L1PA13|LINE|L1	-2169	NR_135276	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
98777	chr17	48133351	48133750	+	0	NA	3' UTR (NM_003726, exon 13 of 13)	3' UTR (NM_003726, exon 13 of 13)	22961	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
158720	chr3	8440201	8440400	+	0	NA	intron (NR_033378, intron 3 of 3)	SVA_D|Retroposon|SVA	61358	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
86636	chr16	67439051	67439350	+	0	NA	intron (NM_004691, intron 5 of 7)	intron (NM_004691, intron 5 of 7)	8079	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
228565	chr9	101737871	101738600	+	0	NA	5' UTR (NM_133445, exon 1 of 9)	5' UTR (NM_133445, exon 1 of 9)	412	NM_133445	116443		NM_133445	ENSG00000198785	GRIN3A	GluN3A|NMDAR-L|NMDAR3A|NR3A	glutamate ionotropic receptor NMDA type subunit 3A	protein-coding
233365	chr9	137467271	137467430	+	0	NA	exon (NM_152286, exon 25 of 34)	exon (NM_152286, exon 25 of 34)	-8016	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
171954	chr4	893871	894030	+	0	NA	exon (NM_005255, exon 8 of 28)	exon (NM_005255, exon 8 of 28)	38366	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
30675	chr10	80500701	80501980	+	0	NA	intron (NM_001128309, intron 2 of 5)	AluJo|SINE|Alu	33099	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
57610	chr12	122473071	122473430	+	0	NA	3' UTR (NM_001350935, exon 11 of 11)	3' UTR (NM_001350935, exon 11 of 11)	27682	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
125481	chr2	12451771	12452600	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	253055	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
231812	chr9	132412851	132412950	+	0	NA	intron (NM_001282957, intron 1 of 5)	intron (NM_001282957, intron 1 of 5)	2689	NM_207417	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
25231	chr10	5968521	5968780	+	0	NA	5' UTR (NM_001351096, exon 2 of 8)	5' UTR (NM_001351096, exon 2 of 8)	278	NM_001351096	3601		NM_002189	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor subunit alpha	protein-coding
21239	chr1	204287971	204288130	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	71879	NM_014935	22874		NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
84735	chr16	30937701	30938100	+	0	NA	intron (NM_001382781, intron 7 of 10)	intron (NM_001382781, intron 7 of 10)	-11168	NM_152288	93129		NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
122389	chr19	49422371	49423150	+	0	NA	promoter-TSS (NM_001385187)	promoter-TSS (NM_001385187)	681	NM_178449	113091		NM_178449	ENSG00000142538	PTH2	TIP39	parathyroid hormone 2	protein-coding
152045	chr22	19576521	19577180	+	0	NA	Intergenic	Intergenic	-10011	NR_024381	150185		NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
106892	chr18	24488751	24489380	+	0	NA	Intergenic	Intergenic	28428	NM_021624	59340		NM_021624	ENSG00000134489	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
150227	chr21	41171201	41171400	+	0	NA	intron (NM_138991, intron 1 of 7)	intron (NM_138991, intron 1 of 7)	3140	NM_012105	25825		NM_012105	ENSG00000182240	BACE2	AEPLC|ALP56|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-secretase 2	protein-coding
197034	chr6	53341671	53342030	+	0	NA	intron (NM_001242830, intron 1 of 6)	MIRc|SINE|MIR	-4233	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
156458	chr22	41250201	41250880	+	0	NA	intron (NM_001278651, intron 14 of 16)	intron (NM_001278651, intron 14 of 16)	2510	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
188871	chr5	159344251	159344350	+	0	NA	intron (NR_037889, intron 2 of 4)	LTR1F2|LTR|ERV1	12782	NR_037889	285626		NR_037889	ENSG00000249738	LOC285626	-	uncharacterized LOC285626	ncRNA
197301	chr6	72412171	72412600	+	0	NA	Intergenic	Intergenic	45639	NM_001168411	22999		NM_014989	ENSG00000079841	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
150343	chr21	42137421	42137880	+	0	NA	intron (NM_173568, intron 21 of 21)	intron (NM_173568, intron 21 of 21)	-29116	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
119524	chr19	40565951	40566500	+	0	NA	exon (NM_020971, exon 30 of 36)	exon (NM_020971, exon 30 of 36)	-10648	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
67622	chr14	72926041	72927700	+	0	NA	intron (NM_181340, intron 1 of 12)	CpG	406	NM_001352449	26094		NM_015604	ENSG00000119599	DCAF4	WDR21|WDR21A	DDB1 and CUL4 associated factor 4	protein-coding
94782	chr17	30975151	30975850	+	0	NA	non-coding (NR_002221, exon 1 of 1)	non-coding (NR_002221, exon 1 of 1)	165	NR_002221	503645		NR_002221	ENSG00000264743	DPRXP4	-	divergent-paired related homeobox pseudogene 4	pseudo
42014	chr11	67412921	67413830	+	0	NA	Intergenic	Intergenic	-2303	NM_020811	57571		NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
92659	chr17	10653001	10653450	+	0	NA	intron (NM_002470, intron 3 of 40)	intron (NM_002470, intron 3 of 40)	4084	NM_002470	4621		NM_002470	ENSG00000109063	MYH3	CPSFS1A|CPSFS1B|CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE	myosin heavy chain 3	protein-coding
21988	chr1	209748751	209748850	+	0	NA	Intergenic	Intergenic	-6238	NR_134510	101930114		NR_134509	ENSG00000227591	HSD11B1-AS1	-	HSD11B1 antisense RNA 1	ncRNA
90091	chr16	90030501	90030900	+	0	NA	promoter-TSS (NR_122031)	promoter-TSS (NR_122031)	-799	NR_122031	750		NM_001214	ENSG00000221819	GAS8-AS1	C16orf3	GAS8 antisense RNA 1	ncRNA
219988	chr8	89900821	89901080	+	0	NA	promoter-TSS (NM_004337)	promoter-TSS (NM_004337)	-918	NM_004337	734		NM_004337	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
129899	chr2	73226901	73227580	+	0	NA	TTS (NR_144358)	TTS (NR_144358)	5999	NM_032319	84279		NM_032319	ENSG00000135617	PRADC1	C2orf7|PAP21	protease associated domain containing 1	protein-coding
96393	chr17	40133821	40134080	+	0	NA	intron (NM_001365920, intron 7 of 7)	intron (NM_001365920, intron 7 of 7)	-6587	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
213260	chr7	134602971	134603130	+	0	NA	Intergenic	Intergenic	-43729	NM_001293085	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
228	chr1	859921	860550	+	0	NA	TTS (NR_047525)	TTS (NR_047525)	16567	NR_027055	284593		NR_027055	ENSG00000230368	FAM41C	-	family with sequence similarity 41 member C	ncRNA
64352	chr14	24082551	24083230	+	0	NA	intron (NM_001354768, intron 1 of 2).2	intron (NM_001354768, intron 1 of 2).2	11328	NM_006032	9362		NM_006032	ENSG00000100884	CPNE6	copine-6	copine 6	protein-coding
203052	chr6	166167571	166167730	+	0	NA	promoter-TSS (NR_166068)	promoter-TSS (NR_166068)	201	NM_001366285	6862		NM_003181	ENSG00000164458	TBXT	SAVA|T|TFT	T-box transcription factor T	protein-coding
162598	chr3	48692451	48692780	+	0	NA	TTS (NR_027438)	TTS (NR_027438)	-6700	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
98257	chr17	46181271	46181830	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluSq10|SINE|Alu	11232	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
35336	chr11	1098571	1098930	+	0	NA	exon (NM_002457, exon 42 of 61)	exon (NM_002457, exon 42 of 61)	23875	NM_002457	4583		NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
190352	chr5	179697901	179700130	+	0	NA	promoter-TSS (NM_001364000)	promoter-TSS (NM_001364000)	48	NM_001746	821		NM_001746	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
116620	chr19	18288621	18289520	+	0	NA	Intergenic	AluY|SINE|Alu	6993	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
135377	chr2	160472851	160473250	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	20757	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
115241	chr19	14516821	14517300	+	0	NA	intron (NM_001313964, intron 2 of 3)	intron (NM_001313964, intron 2 of 3)	802	NM_001300914	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
233607	chrX	343771	344330	+	0	NA	intron (NM_013239, intron 7 of 12)	CpG-29373	24905	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
103609	chr17	78726801	78727000	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-3150	NM_001292018	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
205379	chr7	14403601	14403800	+	0	NA	intron (NM_001350707, intron 21 of 25)	intron (NM_001350707, intron 21 of 25)	-412275	NM_001163148	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
16107	chr1	153631501	153632030	+	0	NA	exon (NM_006271, exon 3 of 3)	exon (NM_006271, exon 3 of 3)	-2217	NM_001244664	26097		NM_015607	ENSG00000160679	CHTOP	C10orf77|C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704	chromatin target of PRMT1	protein-coding
216126	chr8	11413551	11414050	+	0	NA	intron (NR_026814, intron 3 of 6)	intron (NR_026814, intron 3 of 6)	45398	NR_026814	83656		NM_054017	ENSG00000184608	FAM167A-AS1	C8orf12	FAM167A antisense RNA 1	ncRNA
71132	chr14	104972971	104973680	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	-2818	NM_001350929	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
51369	chr12	51827901	51828480	+	0	NA	intron (NM_001384995, intron 1 of 1)	intron (NM_001384995, intron 1 of 1)	3727	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
55361	chr12	104218521	104218780	+	0	NA	intron (NM_001093771, intron 1 of 16)	AluJo|SINE|Alu	2871	NM_001093771	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
220215	chr8	96227201	96227480	+	0	NA	non-coding (NR_045639, exon 5 of 5)	non-coding (NR_045639, exon 5 of 5)	8205	NM_001199975	7381		NM_006294	ENSG00000156467	UQCRB	MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding
43357	chr11	76768451	76769280	+	0	NA	Intergenic	L2a|LINE|L2	-13448	NM_001258210	25987		NM_015516	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
42837	chr11	73072071	73072330	+	0	NA	intron (NM_014824, intron 3 of 19)	intron (NM_014824, intron 3 of 19)	70118	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
72536	chr15	34328471	34329230	+	0	NA	intron (NM_133647, intron 1 of 24)	AluJo|SINE|Alu	7994	NM_133647	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
142226	chr20	3085401	3086000	+	0	NA	promoter-TSS (NM_000490)	promoter-TSS (NM_000490)	-976	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
158173	chr22	50216321	50218080	+	0	NA	TTS (NM_020461)	TTS (NM_020461)	16189	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
57041	chr12	120774171	120774550	+	0	NA	intron (NM_139015, intron 6 of 10)	intron (NM_139015, intron 6 of 10)	48534	NM_001302554	35		NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	acyl-CoA dehydrogenase short chain	protein-coding
127636	chr2	43135821	43136230	+	0	NA	Intergenic	Intergenic	-33580	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
103959	chr17	79928521	79928780	+	0	NA	Intergenic	Intergenic	-1925	NR_110850	101928766		NR_110850	ENSG00000262585	LINC01979	-	long intergenic non-protein coding RNA 1979	ncRNA
24786	chr1	248905671	248907230	+	0	NA	intron (NM_170725, intron 1 of 2)	CpG	207	NM_001017434	267002		NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
233957	chrX	2627171	2627900	+	0	NA	intron (NR_033380, intron 8 of 8)	intron (NR_033380, intron 8 of 8)	-12188	NR_037842	100359394		NR_037842	ENSG00000230542	LINC00102	NCRNA00102	long intergenic non-protein coding RNA 102	ncRNA
44609	chr11	108592701	108594030	+	0	NA	intron (NM_001308019, intron 2 of 6)	CpG	403	NM_015065	23086		NM_015065	ENSG00000110723	EXPH5	EBS4|SLAC2-B|SLAC2B	exophilin 5	protein-coding
28120	chr10	43408501	43410550	+	0	NA	promoter-TSS (NM_004966)	promoter-TSS (NM_004966)	-277	NM_001098204	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
94991	chr17	32352671	32353150	+	0	NA	intron (NM_001098507, intron 2 of 11)	AluSg|SINE|Alu	2753	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
227130	chr9	86259201	86260100	+	0	NA	promoter-TSS (NM_001276366)	promoter-TSS (NM_001276366)	7	NM_001276366	389766		NM_001010907	ENSG00000187753	C9orf153	bA507D14.1	chromosome 9 open reading frame 153	protein-coding
36563	chr11	6646401	6648000	+	0	NA	intron (NM_003737, intron 1 of 20)	intron (NM_003737, intron 1 of 20)	8609	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
76240	chr15	73975571	73976250	+	0	NA	Intergenic	MER21C|LTR|ERVL	16385	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
67275	chr14	69191051	69192480	+	0	NA	promoter-TSS (NM_001193363)	promoter-TSS (NM_001193363)	-1	NM_001193363	55218		NM_018199	ENSG00000081177	EXD2	C14orf114|EXDL2	exonuclease 3'-5' domain containing 2	protein-coding
70635	chr14	102878801	102879000	+	0	NA	intron (NM_001199427, intron 5 of 7)	intron (NM_001199427, intron 5 of 7)	-43763	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
135520	chr2	162067221	162067350	+	0	NA	intron (NR_166824, intron 2 of 25)	intron (NR_166824, intron 2 of 25)	6930	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
204475	chr7	4731071	4731500	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	-44338	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
66326	chr14	61424901	61425430	+	0	NA	intron (NM_006255, intron 2 of 13)	THE1C-int|LTR|ERVL-MaLR	103722	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
201156	chr6	142930001	142930680	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	14836	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
44063	chr11	95298801	95299600	+	0	NA	Intergenic	Intergenic	-66725	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
224584	chr9	20242551	20243580	+	0	NA	Intergenic	Intergenic	168173	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
205073	chr7	6625271	6625430	+	0	NA	Intergenic	Intergenic	9740	NM_001353546	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
59960	chr13	31903101	31903300	+	0	NA	intron (NR_027062, intron 1 of 3)	intron (NR_027062, intron 1 of 3)	56417	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
101650	chr17	68257671	68258250	+	0	NA	TTS (NM_001033572)	TTS (NM_001033572)	-1210	NM_001352903	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
222219	chr8	133071221	133071600	+	0	NA	intron (NM_001045557, intron 1 of 7)	intron (NM_001045557, intron 1 of 7)	-11056	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
161834	chr3	45683701	45684430	+	0	NA	3' UTR (NM_014240, exon 8 of 8)	3' UTR (NM_014240, exon 8 of 8)	4817	NR_033947	644714		NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
15228	chr1	149556571	149557300	+	0	NA	TTS (NM_001351365)	TTS (NM_001351365)	-26888	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
73591	chr15	44540521	44540950	+	0	NA	intron (NM_001284336, intron 2 of 5)	AluSz|SINE|Alu	3588	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
23169	chr1	226754771	226754930	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-15675	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
12482	chr1	107936511	107937730	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-27323	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
130440	chr2	85416471	85416630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2381	NM_201594								
124928	chr2	8546251	8546550	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	37392	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
54507	chr12	92099851	92100350	+	0	NA	intron (NR_132341, intron 1 of 4)	THE1B|LTR|ERVL-MaLR	41613	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
127114	chr2	37646771	37646930	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	24792	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
7966	chr1	37764251	37765000	+	0	NA	intron (NM_173641, intron 1 of 2)	CpG	495	NM_001099439	284656		NM_173641	ENSG00000183317	EPHA10	DFNA88	EPH receptor A10	protein-coding
167330	chr3	128742821	128743750	+	0	NA	intron (NM_004637, intron 1 of 5)	LTR12C|LTR|ERV1	17102	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
178065	chr4	140056121	140056380	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-71765	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
219549	chr8	77940941	77941050	+	0	NA	Intergenic	L1PA2|LINE|L1	490298	NR_125830	102724874		NR_125830		LOC102724874	-	uncharacterized LOC102724874	ncRNA
101900	chr17	74382051	74382350	+	0	NA	Intergenic	FLAM_C|SINE|Alu	14694	NM_001331077	350383		NM_181790	ENSG00000257008	GPR142	GPRg1b|PGR2	G protein-coupled receptor 142	protein-coding
59995	chr13	32422501	32422700	+	0	NA	intron (NM_001353631, intron 1 of 8)	intron (NM_001353631, intron 1 of 8)	5530	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
134778	chr2	147499921	147500780	+	0	NA	Intergenic	Intergenic	-344167	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
150049	chr21	37378621	37379380	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	11443	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
120385	chr19	43665171	43665330	+	0	NA	intron (NM_002659, intron 3 of 6)	G-rich|Low_complexity|Low_complexity	4919	NM_001005377	5329		NM_002659	ENSG00000011422	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
146756	chr20	50837521	50838100	+	0	NA	intron (NM_001010974, intron 3 of 3)	intron (NM_001010974, intron 3 of 3)	42749	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
204562	chr7	5187801	5188180	+	0	NA	Intergenic	Intergenic	-2243	NM_015610	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
74147	chr15	55262401	55262930	+	0	NA	intron (NM_183234, intron 1 of 6)	AluJb|SINE|Alu	7621	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
238750	chrX	154338351	154338800	+	0	NA	Intergenic	AluJr|SINE|Alu	33405	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
104251	chr17	80744121	80745200	+	0	NA	intron (NM_020761, intron 5 of 33)	(GCACTA)n|Simple_repeat|Simple_repeat	60972	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
61888	chr13	77310471	77311130	+	0	NA	intron (NM_015057, intron 1 of 82)	(CA)n|Simple_repeat|Simple_repeat	16294	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
35907	chr11	2418051	2418350	+	0	NA	exon (NM_014555, exon 6 of 24)	exon (NM_014555, exon 6 of 24)	4845	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
79089	chr16	178001	178800	+	0	NA	TTS (NM_000558)	TTS (NM_000558)	1720	NM_000558	3039		NM_000558	ENSG00000206172	HBA1	ECYT7|HBA-T3|HBH|METHBA	hemoglobin subunit alpha 1	protein-coding
160711	chr3	32406921	32407180	+	0	NA	intron (NM_138410, intron 1 of 4)	LTR16A1|LTR|ERVL	15197	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
95277	chr17	35512201	35512650	+	0	NA	intron (NM_001363830, intron 2 of 4)	AluY|SINE|Alu	-24686	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
40963	chr11	65354161	65356930	+	0	NA	intron (NM_145719, intron 1 of 1)	intron (NM_145719, intron 1 of 1)	794	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
147146	chr20	56373851	56374330	+	0	NA	intron (NM_001323304, intron 7 of 9)	intron (NM_001323304, intron 7 of 9)	15116	NM_080821	116151		NM_080821	ENSG00000124098	FAM210B	5A3|C20orf108|dJ1167H4.1	family with sequence similarity 210 member B	protein-coding
103731	chr17	78855201	78855400	+	0	NA	3' UTR (NM_003255, exon 5 of 5)	3' UTR (NM_003255, exon 5 of 5)	-13861	NM_001385176	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
19787	chr1	182389951	182390450	+	0	NA	intron (NM_001033044, intron 1 of 6)	AluSx|SINE|Alu	1204	NM_001033056	2752		NM_002065	ENSG00000135821	GLUL	DEE116|GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
122083	chr19	48734321	48735380	+	0	NA	intron (NM_017805, intron 4 of 11)	AluJo|SINE|Alu	5760	NM_017805	54922		NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
629	chr1	1332421	1333330	+	0	NA	intron (NM_152228, intron 3 of 5)	CpG	1595	NM_152228	83756		NM_152228	ENSG00000169962	TAS1R3	T1R3	taste 1 receptor member 3	protein-coding
18830	chr1	167676051	167676550	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	-45682	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
197978	chr6	90030051	90030150	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	135631	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
41578	chr11	66336001	66337400	+	0	NA	promoter-TSS (NM_001363559)	promoter-TSS (NM_001363559)	74	NM_001363559	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
150192	chr21	39316071	39316900	+	0	NA	intron (NR_046655, intron 1 of 2)	intron (NR_046655, intron 1 of 2)	778	NR_046655	100874093		NR_046655	ENSG00000238141	BRWD1-AS1	-	BRWD1 antisense RNA 1	ncRNA
110112	chr19	1563071	1564200	+	0	NA	intron (NM_203304, intron 1 of 1)	L2b|LINE|L2	4423	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
65189	chr14	49628321	49628750	+	0	NA	intron (NM_018139, intron 1 of 2)	AluSx1|SINE|Alu	5451	NM_001378453	55172		NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
183094	chr5	74580771	74580930	+	0	NA	Intergenic	Intergenic	-43874	NR_126354	104310351		NR_126354	ENSG00000248673	LINC01331	-	long intergenic non-protein coding RNA 1331	ncRNA
61181	chr13	49151051	49151350	+	0	NA	intron (NM_001079673, intron 8 of 25)	L1M2|LINE|L1	40883	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
192786	chr6	26548671	26548830	+	0	NA	Intergenic	AluSz|SINE|Alu	10384	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
174811	chr4	48129251	48130100	+	0	NA	intron (NM_003328, intron 1 of 14)	intron (NM_003328, intron 1 of 14)	4575	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
893	chr1	1660451	1661000	+	0	NA	TTS (NM_001290264)	TTS (NM_001290264)	-1721	NM_001787	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
9677	chr1	52740921	52741380	+	0	NA	intron (NM_024646, intron 1 of 13)	AluSq10|SINE|Alu	14697	NM_024646	79699		NM_024646	ENSG00000162378	ZYG11B	ZYG11	zyg-11 family member B, cell cycle regulator	protein-coding
10879	chr1	78080621	78081150	+	0	NA	intron (NM_017655, intron 2 of 5)	intron (NM_017655, intron 2 of 5)	34919	NM_017655	54810		NM_017655	ENSG00000137960	GIPC2	SEMCAP-2|SEMCAP2	GIPC PDZ domain containing family member 2	protein-coding
144454	chr20	35539951	35540550	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1828	NM_198398	51614		NM_015966	ENSG00000125991	ERGIC3	C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2	ERGIC and golgi 3	protein-coding
27693	chr10	33135401	33135750	+	0	NA	Intergenic	L1PA17|LINE|L1	-18768	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
80824	chr16	3476001	3476200	+	0	NA	intron (NM_001317095, intron 1 of 5)	intron (NM_001317095, intron 1 of 5)	9369	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
167284	chr3	128643171	128643530	+	0	NA	intron (NM_002950, intron 2 of 9)	intron (NM_002950, intron 2 of 9)	7468	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
73262	chr15	41829751	41829950	+	0	NA	intron (NM_005090, intron 1 of 24)	AluJb|SINE|Alu	1758	NM_001114632	100137047		NM_001114632	ENSG00000243789	JMJD7	-	jumonji domain containing 7	protein-coding
162566	chr3	48658151	48658250	+	0	NA	intron (NM_001407, intron 1 of 34)	intron (NM_001407, intron 1 of 34)	4686	NM_001407	1951		NM_001407	ENSG00000008300	CELSR3	ADGRC3|CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1	cadherin EGF LAG seven-pass G-type receptor 3	protein-coding
174536	chr4	40192651	40193730	+	0	NA	promoter-TSS (NM_001278369)	promoter-TSS (NM_001278369)	223	NM_001278367	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
14200	chr1	125180011	125180880	+	0	NA	Intergenic	Intergenic	3661333	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
99173	chr17	49414421	49415950	+	0	NA	promoter-TSS (NM_002634)	promoter-TSS (NM_002634)	-280	NM_001281715	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
153620	chr22	28594651	28595000	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	85040	NM_001145418	23331		NM_015281	ENSG00000100154	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
31636	chr10	97390321	97390730	+	0	NA	exon (NM_001145114, exon 4 of 32)	exon (NM_001145114, exon 4 of 32)	10815	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
135399	chr2	160651901	160652650	+	0	NA	Intergenic	L2a|LINE|L2	-158468	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
205397	chr7	16396301	16396500	+	0	NA	intron (NR_160656, intron 2 of 7)	L1P5|LINE|L1	25138	NM_001101417	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
89392	chr16	88808801	88809000	+	0	NA	TTS (NM_000485)	TTS (NM_000485)	3028	NM_000485	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
139487	chr2	224519901	224520780	+	0	NA	intron (NM_003590, intron 3 of 15)	intron (NM_003590, intron 3 of 15)	49615	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
8418	chr1	40438421	40438680	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-11514	NM_001369565	65243		NM_023070	ENSG00000187801	ZFP69B	ZKSCAN23B|ZNF643|ZSCAN54B	ZFP69 zinc finger protein B	protein-coding
209489	chr7	76626521	76628380	+	0	NA	promoter-TSS (NM_012230)	promoter-TSS (NM_012230)	-147	NM_152992	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
118184	chr19	35090421	35090900	+	0	NA	intron (NR_024561, intron 1 of 3)	intron (NR_024561, intron 1 of 3)	15611	NR_024561	100128675		NR_024561	ENSG00000227392	HPN-AS1	-	HPN antisense RNA 1	ncRNA
230081	chr9	127469851	127469950	+	0	NA	intron (NR_168892, intron 10 of 25)	AluY|SINE|Alu	17645	NM_001005374	90678		NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
137560	chr2	197243521	197243880	+	0	NA	intron (NM_153697, intron 1 of 9)	MLT1A0|LTR|ERVL-MaLR	45709	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
175540	chr4	74632571	74632950	+	0	NA	Intergenic	Intergenic	161763	NM_001316963	685		NM_001729	ENSG00000174808	BTC	-	betacellulin	protein-coding
164980	chr3	71307821	71308280	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-3279	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
55669	chr12	107371951	107372650	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	51712	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
51661	chr12	53055651	53057080	+	0	NA	promoter-TSS (NR_106815)	promoter-TSS (NR_106815)	-579	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
185135	chr5	119305301	119306250	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	-27400	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
111114	chr19	3213371	3213530	+	0	NA	Intergenic	Intergenic	-11211	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
49364	chr12	22332501	22333150	+	0	NA	intron (NM_001304450, intron 1 of 3)	intron (NM_001304450, intron 1 of 3)	1889	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
151194	chr21	45088751	45089050	+	0	NA	intron (NM_001346688, intron 1 of 11)	L1MC4a|LINE|L1	13849	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
226482	chr9	71756371	71756530	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	12063	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
199741	chr6	125788771	125789290	+	0	NA	intron (NM_001199619, intron 2 of 16)	intron (NM_001199619, intron 2 of 16)	-1930	NM_001122842	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
120559	chr19	44983321	44983580	+	0	NA	intron (NM_001282175, intron 5 of 13)	AluSx3|SINE|Alu	-18014	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
44301	chr11	102346171	102347700	+	0	NA	promoter-TSS (NM_001256163)	promoter-TSS (NM_001256163)	-247	NM_001166	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
62823	chr13	109765021	109765930	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	21108	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
210667	chr7	100522671	100523380	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-16178	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
163303	chr3	50345271	50346100	+	0	NA	promoter-TSS (NM_001308379)	promoter-TSS (NM_001308379)	47	NM_015896	51364		NM_015896	ENSG00000004838	ZMYND10	BLU|CILD22|DNAAF7|FLU	zinc finger MYND-type containing 10	protein-coding
137689	chr2	197484371	197484600	+	0	NA	Intergenic	AluSg|SINE|Alu	2418	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
207687	chr7	45259851	45260280	+	0	NA	Intergenic	Intergenic	102274	NM_005856	10268		NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
161050	chr3	38018651	38019180	+	0	NA	intron (NM_006225, intron 2 of 14)	intron (NM_006225, intron 2 of 14)	5605	NM_001130964	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
62992	chr13	112308301	112308500	+	0	NA	Intergenic	Intergenic	-5067	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
44972	chr11	116856371	116856730	+	0	NA	TTS (NR_126362)	TTS (NR_126362)	-18600	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
143621	chr20	31738451	31739690	+	0	NA	promoter-TSS (NM_012112)	promoter-TSS (NM_012112)	-220	NM_012112	22974		NM_012112	ENSG00000088325	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2 microtubule nucleation factor	protein-coding
2657	chr1	10457271	10457680	+	0	NA	3' UTR (NM_004401, exon 6 of 6)	3' UTR (NM_004401, exon 6 of 6)	7444	NM_001302	1325		NM_001302	ENSG00000241563	CORT	CST-14|CST-17|CST-29|SST2	cortistatin	protein-coding
170420	chr3	185587871	185588430	+	0	NA	intron (NM_021627, intron 1 of 16)	AluYc|SINE|Alu	1855	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
93138	chr17	17737951	17738850	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	27902	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
103812	chr17	79094571	79094880	+	0	NA	intron (NM_001082575, intron 13 of 14)	intron (NM_001082575, intron 13 of 14)	19901	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
146552	chr20	49989201	49989700	+	0	NA	TTS (NM_005985)	TTS (NM_005985)	6470	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
180168	chr5	1446201	1446400	+	0	NA	promoter-TSS (NM_001044).2	promoter-TSS (NM_001044).2	-860	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
204766	chr7	5603021	5603750	+	0	NA	exon (NM_003088, exon 2 of 5)	exon (NM_003088, exon 2 of 5)	10569	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
6971	chr1	31784901	31785630	+	0	NA	Intergenic	Intergenic	-20925	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
236872	chrX	81121421	81122400	+	0	NA	intron (NM_030763, intron 1 of 6)	intron (NM_030763, intron 1 of 6)	80003	NM_030763	79366		NM_030763	ENSG00000198157	HMGN5	NBP-45|NSBP1	high mobility group nucleosome binding domain 5	protein-coding
207719	chr7	47751151	47751250	+	0	NA	Intergenic	Intergenic	-10276	NR_038407	84847		NM_032761	ENSG00000146666	LINC00525	-	long intergenic non-protein coding RNA 525	ncRNA
137717	chr2	197599251	197599880	+	0	NA	intron (NM_144629, intron 7 of 8)	intron (NM_144629, intron 7 of 8)	76022	NM_144629	130132		NM_144629	ENSG00000162944	RFTN2	C2orf11|Raftlin-2	raftlin family member 2	protein-coding
113458	chr19	9862251	9863250	+	0	NA	intron (NM_058164, intron 1 of 5)	AluSq|SINE|Alu	-4575	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
3058	chr1	12165551	12165900	+	0	NA	Intergenic	Intergenic	-1218	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
230200	chr9	127810671	127810830	+	0	NA	intron (NR_110170, intron 13 of 14)	intron (NR_110170, intron 13 of 14)	-5316	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
32434	chr10	102506271	102506430	+	0	NA	intron (NM_001178133, intron 1 of 10)	intron (NM_001178133, intron 1 of 10)	2378	NM_001178133	51684		NM_016169	ENSG00000107882	SUFU	BCNS2|JBTS32|PRO1280|SUFUH|SUFUXL	SUFU negative regulator of hedgehog signaling	protein-coding
194917	chr6	34868501	34868700	+	0	NA	intron (NM_017754, intron 17 of 20)	AluSx1|SINE|Alu	19442	NM_005643	6882		NM_005643	ENSG00000064995	TAF11	MGC:15243|PRO2134|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding
132336	chr2	105546671	105547030	+	0	NA	Intergenic	Intergenic	63709	NR_038891	285000		NR_038891		LINC02946	RMEL1	long intergenic non-protein coding RNA 2946	ncRNA
198057	chr6	90212201	90212900	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	84293	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
101365	chr17	67226821	67227080	+	0	NA	intron (NM_001330447, intron 3 of 32)	L1ME1|LINE|L1	-17826	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
66113	chr14	60051501	60052250	+	0	NA	intron (NR_075071, intron 29 of 32)	L1PA11|LINE|L1	-40036	NM_022495	64430		NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex 4	protein-coding
160832	chr3	33061671	33062250	+	0	NA	intron (NM_000404, intron 5 of 15)	intron (NM_000404, intron 5 of 15)	34872	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
186387	chr5	135035251	135035350	+	0	NA	intron (NR_161235, intron 1 of 5)	intron (NR_161235, intron 1 of 5)	-1072	NM_002653	5307		NM_002653	ENSG00000069011	PITX1	BFT|CCF|LBNBG|POTX|PTX1	paired like homeodomain 1	protein-coding
63977	chr14	22221601	22221850	+	0	NA	Intergenic	Intergenic	211028	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
112161	chr19	5638201	5638600	+	0	NA	intron (NM_001320571, intron 2 of 18)	AluSx1|SINE|Alu	15317	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
129877	chr2	73107221	73108430	+	0	NA	intron (NM_001371272, intron 1 of 5)	intron (NM_001371272, intron 1 of 5)	5123	NM_001371272	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
5508	chr1	25770601	25770800	+	0	NA	intron (NM_001385185, intron 6 of 10)	intron (NM_001385185, intron 6 of 10)	-29493	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
32252	chr10	101889521	101890130	+	0	NA	intron (NM_024541, intron 23 of 25)	intron (NM_024541, intron 23 of 25)	-45905	NM_173197	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
173252	chr4	6999321	6999580	+	0	NA	intron (NM_020773, intron 6 of 13)	L2b|LINE|L2	11942	NM_001286805	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
192582	chr6	25958451	25958850	+	0	NA	Intergenic	LTR29|LTR|ERV1	-4152	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
92351	chr17	8180001	8180600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3920	NM_032354	84314		NM_032354	ENSG00000179029	TMEM107	GRVS638|JBTS29|MKS13|PRO1268	transmembrane protein 107	protein-coding
77264	chr15	81333951	81334050	+	0	NA	intron (NM_001080532, intron 21 of 21)	AluSq2|SINE|Alu	9667	NR_120365	101929655		NR_120365		TMC3-AS1	-	TMC3 antisense RNA 1	ncRNA
93831	chr17	20896051	20896350	+	0	NA	promoter-TSS (NR_164128)	promoter-TSS (NR_164128)	-37	NR_164128	339184		NM_001004306	ENSG00000291074	CCDC144NL	-	CCDC144A N-terminal like (pseudogene)	pseudo
46903	chr11	134139571	134140000	+	0	NA	intron (NM_032801, intron 1 of 8)	intron (NM_032801, intron 1 of 8)	11578	NR_145790	109623486		NR_145790		SNORD153	-	small nucleolar RNA, C/D box 153	snoRNA
206464	chr7	32939721	32939980	+	0	NA	intron (NR_003500, intron 1 of 5)	AluSx|SINE|Alu	3320	NR_003500	441212		NM_001039754	ENSG00000291146	RP9P	-	RP9 pseudogene	pseudo
162762	chr3	49063671	49064030	+	0	NA	intron (NM_001320580, intron 3 of 10)	Charlie1b|DNA|hAT-Charlie	29782	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
62781	chr13	108495221	108496480	+	0	NA	Intergenic	CpG	-100055	NM_015011	23026		NM_015011	ENSG00000041515	MYO16	MYAP3|MYR8|Myo16b|NYAP3|PPP1R107	myosin XVI	protein-coding
73986	chr15	52017571	52018100	+	0	NA	intron (NR_156732, intron 1 of 1)	intron (NR_156732, intron 1 of 1)	1260	NR_156732	112543478		NR_156732	ENSG00000259438	MAPK6-DT	lncMAPK6	MAPK6 divergent transcript	ncRNA
174732	chr4	42768101	42768300	+	0	NA	Intergenic	L1PB1|LINE|L1	-111095	NM_001105529	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
40072	chr11	62762951	62763480	+	0	NA	intron (NM_002696, intron 3 of 7)	AluSc8|SINE|Alu	1635	NM_002696	5436		NM_002696	ENSG00000168002	POLR2G	RPB19|RPB7|hRPB19|hsRPB7	RNA polymerase II subunit G	protein-coding
85780	chr16	56940601	56940800	+	0	NA	intron (NM_014685, intron 6 of 7)	AluSx|SINE|Alu	8558	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
191354	chr6	7146021	7146900	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	38499	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
18144	chr1	160751201	160752180	+	0	NA	intron (NM_021181, intron 5 of 6)	intron (NM_021181, intron 5 of 6)	12443	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
63624	chr14	20654201	20655230	+	0	NA	Intergenic	MER11C|LTR|ERVK	-13024	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
5061	chr1	24641991	24644030	+	0	NA	promoter-TSS (NM_001366600)	promoter-TSS (NM_001366600)	-292	NM_001366568	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
180196	chr5	1494721	1495880	+	0	NA	intron (NM_024830, intron 2 of 13)	intron (NM_024830, intron 2 of 13)	15556	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
84103	chr16	29638121	29638380	+	0	NA	Intergenic	Intergenic	-24533	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
204798	chr7	5634021	5634500	+	0	NA	intron (NM_207111, intron 15 of 16)	intron (NM_207111, intron 15 of 16)	41444	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
49928	chr12	39685371	39685530	+	0	NA	intron (NR_135051, intron 10 of 18)	MSTA|LTR|ERVL-MaLR	59267	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
92896	chr17	16444401	16445380	+	0	NA	intron (NM_207387, intron 2 of 2)	AluSx1|SINE|Alu	3664	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
215401	chr7	157501651	157501950	+	0	NA	Intergenic	CpG	35569	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
225454	chr9	35114951	35117280	+	0	NA	promoter-TSS (NM_025182)	promoter-TSS (NM_025182)	-253	NM_025182	80256		NM_025182	ENSG00000005238	ATOSB	FAM214B|KIAA1539	atos homolog B	protein-coding
186014	chr5	133969871	133970430	+	0	NA	TTS (NR_134247)	TTS (NR_134247)	1461	NR_134247	105379183		NR_134247		LOC105379183	-	uncharacterized LOC105379183	ncRNA
69543	chr14	96506921	96507330	+	0	NA	intron (NM_001293628, intron 1 of 21)	Charlie1|DNA|hAT-Charlie	4260	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
70910	chr14	104092401	104092930	+	0	NA	exon (NM_001080464, exon 2 of 16)	exon (NM_001080464, exon 2 of 16)	6965	NM_001080464	374569		NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT|LYSOLP|hASNase1	asparaginase	protein-coding
197850	chr6	88962871	88964020	+	0	NA	5' UTR (NM_003800, exon 1 of 16)	5' UTR (NM_003800, exon 1 of 16)	173	NM_003800	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
94586	chr17	29708351	29708950	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	52782	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
79437	chr16	707151	707250	+	0	NA	Intergenic	Intergenic	-1399	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
23877	chr1	234849871	234850230	+	0	NA	Intergenic	Intergenic	-89994	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
86172	chr16	57803701	57803900	+	0	NA	promoter-TSS (NM_001318710)	promoter-TSS (NM_001318710)	-547	NM_001318710	3801		NM_005550	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
72732	chr15	38698101	38698800	+	0	NA	non-coding (NR_160786, exon 2 of 2)	non-coding (NR_160786, exon 2 of 2)	1852	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
145584	chr20	44518801	44519650	+	0	NA	intron (NM_006811, intron 1 of 9)	L2|LINE|L2	2845	NM_006811	10955		NM_006811	ENSG00000132824	SERINC3	AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1	serine incorporator 3	protein-coding
175273	chr4	67525421	67526350	+	0	NA	intron (NR_155754, intron 5 of 18)	L1PA8|LINE|L1	19618	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
24318	chr1	237410201	237410400	+	0	NA	intron (NM_001035, intron 10 of 104)	intron (NM_001035, intron 10 of 104)	-60819	NR_039626	100616141		NR_039626	ENSG00000266262	MIR4428	-	microRNA 4428	ncRNA
30503	chr10	79317441	79319030	+	0	NA	Intergenic	Intergenic	-29234	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
79955	chr16	1768451	1768650	+	0	NA	exon (NM_001040439, exon 30 of 31)	exon (NM_001040439, exon 30 of 31)	3159	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
45567	chr11	118820651	118820950	+	0	NA	Intergenic	Intergenic	-29636	NM_004397	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
22923	chr1	225926751	225927050	+	0	NA	Intergenic	Intergenic	-2560	NM_001271681	29920		NM_013328	ENSG00000143811	PYCR2	HLD10|P5CR2	pyrroline-5-carboxylate reductase 2	protein-coding
75866	chr15	69707021	69707480	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	115050	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
53551	chr12	67512201	67512450	+	0	NA	Intergenic	Intergenic	-7757	NR_103861	100507175		NR_103861	ENSG00000203585	LINC02408	-	long intergenic non-protein coding RNA 2408	ncRNA
22892	chr1	225845771	225846350	+	0	NA	TTS (NM_001136018)	TTS (NM_001136018)	20706	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
135093	chr2	157340101	157340300	+	0	NA	Intergenic	MER41A|LTR|ERV1	-12488	NM_001009959	57471		NM_020711	ENSG00000136541	ERMN	JN|KIAA1189	ermin	protein-coding
134495	chr2	143320801	143321000	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	191481	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
228828	chr9	112076451	112077300	+	0	NA	intron (NM_022486, intron 12 of 16)	L2a|LINE|L2	98422	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
91268	chr17	4043401	4044500	+	0	NA	intron (NM_015113, intron 38 of 54)	L2b|LINE|L2	66847	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
55003	chr12	96363401	96364150	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSc8|SINE|Alu	36664	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
208265	chr7	65762651	65763080	+	0	NA	intron (NR_003110, intron 10 of 11)	intron (NR_003110, intron 10 of 11)	2813	NR_145716	109616962		NR_145716	ENSG00000207062	SNORA15B-1	-	small nucleolar RNA, H/ACA box 15B-1	snoRNA
163009	chr3	49788101	49788680	+	0	NA	Intergenic	Intergenic	-1848	NM_153273	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
88466	chr16	85029401	85030230	+	0	NA	intron (NM_001286566, intron 1 of 11)	MIRc|SINE|MIR	2064	NM_001297766	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
122555	chr19	49654671	49654830	+	0	NA	exon (NM_021228, exon 9 of 11)	exon (NM_021228, exon 9 of 11)	-10392	NM_001282519	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
74010	chr15	52156901	52157100	+	0	NA	intron (NM_016194, intron 3 of 12)	AluY|SINE|Alu	22691	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
58026	chr12	124431621	124431880	+	0	NA	intron (NM_001077261, intron 10 of 47)	(CA)n|Simple_repeat|Simple_repeat	-94508	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
223103	chr8	143435951	143436400	+	0	NA	Intergenic	Intergenic	-5443	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
110533	chr19	2083201	2084000	+	0	NA	intron (NM_130807, intron 2 of 4)	intron (NM_130807, intron 2 of 4)	12726	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
10167	chr1	61079371	61079530	+	0	NA	intron (NM_001145511, intron 1 of 10)	intron (NM_001145511, intron 1 of 10)	2223	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
24582	chr1	245310601	245310800	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	-76183	NR_151721	111216275		NR_151721	ENSG00000232192	KIF26B-AS1	-	KIF26B antisense RNA 1	ncRNA
151929	chr22	19035371	19036280	+	0	NA	TTS (NM_005137)	TTS (NM_005137)	12550	NR_024157	25786		NR_024157	ENSG00000273311	DGCR11	DGS-D	DiGeorge syndrome critical region gene 11	ncRNA
4698	chr1	23109051	23109500	+	0	NA	intron (NM_001142546, intron 1 of 3)	intron (NM_001142546, intron 1 of 3)	59581	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
111636	chr19	4171721	4172030	+	0	NA	exon (NM_032607, exon 10 of 10)	exon (NM_032607, exon 10 of 10)	10431	NM_001321064	51548		NM_016539	ENSG00000077463	SIRT6	SIR2L6|hSIRT6	sirtuin 6	protein-coding
196271	chr6	42960151	42961450	+	0	NA	promoter-TSS (NM_018960)	promoter-TSS (NM_018960)	46	NM_001318865	27232		NM_018960	ENSG00000124713	GNMT	HEL-S-182mP	glycine N-methyltransferase	protein-coding
36499	chr11	6400551	6400900	+	0	NA	intron (NM_001257325, intron 10 of 12)	intron (NM_001257325, intron 10 of 12)	3966	NM_001257325	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
211130	chr7	102534371	102534980	+	0	NA	Intergenic	AluJo|SINE|Alu	10113	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
104314	chr17	80907501	80907700	+	0	NA	intron (NM_020761, intron 20 of 33)	intron (NM_020761, intron 20 of 33)	63613	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
206008	chr7	26278501	26279030	+	0	NA	Intergenic	Intergenic	-13097	NM_013322	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
233900	chrX	1601171	1601430	+	0	NA	non-coding (NR_027383, exon 6 of 6)	non-coding (NR_027383, exon 6 of 6)	5845	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
147222	chr20	57395021	57395930	+	0	NA	intron (NM_001291780, intron 4 of 4)	intron (NM_001291780, intron 4 of 4)	-2419	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
170602	chr3	186955771	186956280	+	0	NA	intron (NM_173216, intron 1 of 7)	MIRc|SINE|MIR	25499	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
116927	chr19	18835171	18835530	+	0	NA	intron (NM_001297549, intron 1 of 23)	AluSg|SINE|Alu	3391	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
189180	chr5	171412171	171412700	+	0	NA	Intergenic	Intergenic	-7212	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
117863	chr19	32464271	32464430	+	0	NA	intron (NM_207325, intron 14 of 18)	intron (NM_207325, intron 14 of 18)	58225	NM_207325	147991		NM_207325	ENSG00000178904	DPY19L3	-	dpy-19 like C-mannosyltransferase 3	protein-coding
10369	chr1	64953071	64953950	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	13039	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
100883	chr17	64384021	64384550	+	0	NA	intron (NM_000442, intron 2 of 15)	intron (NM_000442, intron 2 of 15)	6575	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
233650	chrX	915271	915950	+	0	NA	Intergenic	Intergenic	291266	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
126145	chr2	26183571	26183730	+	0	NA	intron (NM_001168241, intron 3 of 5)	AluJr|SINE|Alu	2934	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
234383	chrX	16123301	16123530	+	0	NA	promoter-TSS (NM_005314)	promoter-TSS (NM_005314)	-150	NM_005314	2925		NM_005314	ENSG00000126010	GRPR	BB2|BB2R|BRS2	gastrin releasing peptide receptor	protein-coding
90629	chr17	1652621	1653180	+	0	NA	intron (NM_006445, intron 39 of 42)	AluJo|SINE|Alu	-3034	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
195144	chr6	35710251	35710930	+	0	NA	intron (NM_001145775, intron 2 of 11)	L1ME1|LINE|L1	17993	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
133156	chr2	112708821	112709230	+	0	NA	Intergenic	MamGypsy2-I|LTR|Gypsy	-12461	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
72474	chr15	32505721	32505980	+	0	NA	Intergenic	LTR2B|LTR|ERV1	27891	NR_036650	100288615		NR_036650		WHAMMP1	WHDC1P1	WHAMM pseudogene 1	pseudo
170952	chr3	194397901	194398750	+	0	NA	intron (NM_004488, intron 1 of 1)	intron (NM_004488, intron 1 of 1)	941	NM_004488	2814		NM_004488	ENSG00000178732	GP5	CD42d|GPV	glycoprotein V platelet	protein-coding
29354	chr10	69567971	69568350	+	0	NA	Intergenic	Intergenic	5262	NM_020999	50674		NM_020999	ENSG00000122859	NEUROG3	Atoh5|Math4B|NGN-3|bHLHa7|ngn3	neurogenin 3	protein-coding
109095	chr18	79966321	79966580	+	0	NA	intron (NM_001136180, intron 1 of 3)	AluSx|SINE|Alu	1807	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
127755	chr2	43927251	43927750	+	0	NA	intron (NM_133259, intron 25 of 37)	intron (NM_133259, intron 25 of 37)	68489	NM_133259	10128		NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC|MC4DN5	leucine rich pentatricopeptide repeat containing	protein-coding
153402	chr22	24804601	24805230	+	0	NA	Intergenic	L2a|LINE|L2	-1296	NM_001098497	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
28577	chr10	51011001	51011230	+	0	NA	intron (NM_001098512, intron 1 of 17)	MER20B|DNA|hAT-Charlie	20227	NM_001098512	5592		NM_006258	ENSG00000185532	PRKG1	AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha	protein kinase cGMP-dependent 1	protein-coding
108631	chr18	76451021	76451550	+	0	NA	intron (NM_014643, intron 2 of 6)	intron (NM_014643, intron 2 of 6)	-40367	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
52767	chr12	56676821	56677900	+	0	NA	intron (NM_001282601, intron 1 of 6)	MER119|DNA|hAT-Charlie	10924	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
123061	chr19	51354371	51355130	+	0	NA	promoter-TSS (NM_001014763)	promoter-TSS (NM_001014763)	92	NM_001014763	2109		NM_001985	ENSG00000105379	ETFB	FP585|MADD	electron transfer flavoprotein subunit beta	protein-coding
122632	chr19	49826501	49826700	+	0	NA	intron (NM_030973, intron 3 of 17)	intron (NM_030973, intron 3 of 17)	-5418	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
230814	chr9	129032521	129033250	+	0	NA	Intergenic	MER49|LTR|ERV1	-3741	NR_138422	84895		NM_032809	ENSG00000148343	MIGA2	C9orf54|FAM73B	mitoguardin 2	protein-coding
225040	chr9	33156871	33157430	+	0	NA	intron (NM_001378495, intron 1 of 5)	(AC)n|Simple_repeat|Simple_repeat	-9798	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
89022	chr16	88247601	88248100	+	0	NA	Intergenic	(GTGA)n|Simple_repeat|Simple_repeat	53569	NR_110944	101928880		NR_110944	ENSG00000260420	LINC02182	LA16c-444G7.2	long intergenic non-protein coding RNA 2182	ncRNA
219772	chr8	81108271	81109100	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	3383	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
59462	chr13	26017571	26018130	+	0	NA	intron (NM_016529, intron 36 of 36)	intron (NM_016529, intron 36 of 36)	34166	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
83653	chr16	28315301	28315500	+	0	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	22875	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
188093	chr5	150341151	150341250	+	0	NA	Intergenic	Intergenic	-16439	NM_001135243	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
212309	chr7	126727751	126728050	+	0	NA	intron (NM_001371088, intron 7 of 7)	intron (NM_001371088, intron 7 of 7)	330284	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
226995	chr9	83625401	83625600	+	0	NA	intron (NR_046421, intron 1 of 3)	L2a|LINE|L2	2357	NR_046422	414328		NM_001001551	ENSG00000148057	IDNK	C9orf103|bA522I20.2|hGntK	IDNK gluconokinase	protein-coding
200515	chr6	135909751	135910080	+	0	NA	intron (NM_018945, intron 1 of 12)	intron (NM_018945, intron 1 of 12)	58214	NM_018945	27115		NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
61687	chr13	74037451	74038280	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	96064	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
129658	chr2	70245821	70246200	+	0	NA	intron (NR_147217, intron 1 of 12)	AluSz|SINE|Alu	2618	NM_022037	7072		NM_022037	ENSG00000116001	TIA1	ALS26|TIA-1|WDM	TIA1 cytotoxic granule associated RNA binding protein	protein-coding
149883	chr21	35925051	35925800	+	0	NA	Intergenic	Intergenic	38980	NR_144547	54036		NR_144547		PPP1R2P2	-	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2	pseudo
177651	chr4	121242371	121242830	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	-15117	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
58851	chr12	132908251	132909630	+	0	NA	Intergenic	CpG	21098	NR_110919	101928530		NR_110919	ENSG00000236617	CHFR-DT	-	CHFR divergent transcript	ncRNA
17976	chr1	160460051	160461100	+	0	NA	Intergenic	Intergenic	60011	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
140095	chr2	231458601	231459000	+	0	NA	intron (NM_005381, intron 7 of 13)	intron (NM_005381, intron 7 of 13)	1642	NR_004398	25826		NR_004398	ENSG00000202400	SNORD82	RNU82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA
231731	chr9	131838221	131838480	+	0	NA	Intergenic	Intergenic	-98274	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
58158	chr12	124941921	124942300	+	0	NA	Intergenic	AluSz6|SINE|Alu	26563	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
142393	chr20	3821971	3822330	+	0	NA	exon (NM_018347, exon 2 of 3)	exon (NM_018347, exon 2 of 3)	1603	NM_001204447	55317		NM_018347	ENSG00000125843	AP5S1	C20orf29	adaptor related protein complex 5 subunit sigma 1	protein-coding
114165	chr19	11355201	11356800	+	0	NA	intron (NM_001170635, intron 1 of 9)	intron (NM_001170635, intron 1 of 9)	568	NM_022737	64748		NM_022737	ENSG00000105520	PLPPR2	LPPR2|PRG4	phospholipid phosphatase related 2	protein-coding
74641	chr15	60838601	60839000	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	157231	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
129908	chr2	73256971	73257130	+	0	NA	3' UTR (NM_001080410, exon 17 of 17)	3' UTR (NM_001080410, exon 17 of 17)	22742	NM_006429	10574		NM_006429	ENSG00000135624	CCT7	CCTETA|CCTH|NIP7-1|TCP1ETA	chaperonin containing TCP1 subunit 7	protein-coding
12980	chr1	110900621	110901230	+	0	NA	TTS (NM_001320638)	TTS (NM_001320638)	27777	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
71676	chr15	19972751	19973000	+	0	NA	Intergenic	Intergenic	-309869	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
177901	chr4	129088971	129089130	+	0	NA	intron (NM_001300898, intron 1 of 5)	L1PA7|LINE|L1	4489	NM_144643	132320		NM_144643	ENSG00000151466	SCLT1	CAP-1A|CAP1A	sodium channel and clathrin linker 1	protein-coding
131052	chr2	88451251	88451350	+	0	NA	intron (NM_001135649, intron 1 of 1)	intron (NM_001135649, intron 1 of 1)	1393	NM_001135649	344167		NM_001135649	ENSG00000214336	FOXI3	CFM2	forkhead box I3	protein-coding
81563	chr16	9127621	9129000	+	0	NA	Intergenic	Intergenic	36666	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
1531	chr1	3270651	3271250	+	0	NA	intron (NM_199454, intron 3 of 16)	intron (NM_199454, intron 3 of 16)	142975	NR_036215	100422968		NR_036215	ENSG00000283572	MIR4251	-	microRNA 4251	ncRNA
142142	chr20	2749571	2749880	+	0	NA	exon (NM_001110514, exon 10 of 18)	exon (NM_001110514, exon 10 of 18)	50902	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
186881	chr5	139519471	139519630	+	0	NA	Intergenic	Intergenic	-36792	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
188399	chr5	153959151	153959450	+	0	NA	Intergenic	Intergenic	-60313	NR_146729	105378238		NR_146729	ENSG00000251183	LINC01861	-	long intergenic non-protein coding RNA 1861	ncRNA
212003	chr7	114088371	114088530	+	0	NA	intron (NR_033766, intron 1 of 19)	intron (NR_033766, intron 1 of 19)	2123	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
202519	chr6	158569151	158569630	+	0	NA	intron (NR_164859, intron 1 of 16)	intron (NR_164859, intron 1 of 16)	9299	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
132517	chr2	106106551	106107000	+	0	NA	intron (NR_165308, intron 10 of 14)	intron (NR_165308, intron 10 of 14)	32106	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
210305	chr7	99465601	99466900	+	0	NA	promoter-TSS (NM_004889)	promoter-TSS (NM_004889)	-83	NM_001003713	9551		NM_004889	ENSG00000241468	ATP5MF	ATP5J2|ATP5JL	ATP synthase membrane subunit f	protein-coding
146635	chr20	50211101	50211500	+	0	NA	Intergenic	L1ME3|LINE|L1	-19231	NR_125739	101927559		NR_125739	ENSG00000277449	CEBPB-AS1	-	CEBPB antisense RNA 1	ncRNA
138135	chr2	202302101	202302300	+	0	NA	intron (NM_015934, intron 13 of 14)	AluSz|SINE|Alu	9149	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
216242	chr8	12206721	12207580	+	0	NA	Intergenic	Intergenic	-13017	NR_148876	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
204284	chr7	2659671	2659980	+	0	NA	intron (NM_025250, intron 13 of 13)	intron (NM_025250, intron 13 of 13)	-19697	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
29633	chr10	71814701	71815400	+	0	NA	exon (NM_022124, exon 68 of 68)	exon (NM_022124, exon 68 of 68)	3167	NM_001171935	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
55178	chr12	100269901	100270100	+	0	NA	intron (NM_017988, intron 1 of 17)	AluY|SINE|Alu	2616	NM_001330253	55681		NM_017988	ENSG00000136021	SCYL2	AMC4|AMCNACC|CVAK104	SCY1 like pseudokinase 2	protein-coding
108709	chr18	77071501	77072600	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	-54995	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
57457	chr12	121921151	121921250	+	0	NA	intron (NM_001178003, intron 1 of 17)	intron (NM_001178003, intron 1 of 17)	2608	NM_001178003	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
58396	chr12	131901471	131901830	+	0	NA	intron (NM_003565, intron 3 of 27)	intron (NM_003565, intron 3 of 27)	7028	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
238707	chrX	154093071	154093230	+	0	NA	intron (NM_004992, intron 1 of 3)	intron (NM_004992, intron 1 of 3)	3819	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
167562	chr3	129398801	129400450	+	0	NA	promoter-TSS (NR_003111)	promoter-TSS (NR_003111)	-186	NR_003111	132241		NR_003111	ENSG00000290993	RPL32P3	-	ribosomal protein L32 pseudogene 3	pseudo
142099	chr20	2637071	2638030	+	0	NA	exon (NM_080751, exon 19 of 20)	exon (NM_080751, exon 19 of 20)	-15082	NR_027700	10528		NM_006392	ENSG00000101361	NOP56	NOL5A|SCA36	NOP56 ribonucleoprotein	protein-coding
134982	chr2	152645971	152646330	+	0	NA	intron (NM_052905, intron 25 of 25)	AluJr|SINE|Alu	71311	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
197782	chr6	87673721	87674280	+	0	NA	TTS (NM_018064)	TTS (NM_018064)	28233	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
129371	chr2	68789371	68790030	+	0	NA	intron (NM_001364819, intron 4 of 10)	intron (NM_001364819, intron 4 of 10)	14790	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
51879	chr12	53497601	53497800	+	0	NA	intron (NM_006301, intron 1 of 14)	intron (NM_006301, intron 1 of 14)	1758	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
80978	chr16	3958671	3958830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8306	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
55871	chr12	109476671	109477910	+	0	NA	promoter-TSS (NM_031954)	promoter-TSS (NM_031954)	10	NR_133897	83892		NM_031954	ENSG00000110906	KCTD10	BTBD28|MSTP028|ULRO61|hBACURD3	potassium channel tetramerization domain containing 10	protein-coding
165726	chr3	104291571	104292230	+	0	NA	Intergenic	MER65-int|LTR|ERV1	-767784	NR_039611	100616336		NR_039611	ENSG00000265328	MIR548AB	-	microRNA 548ab	ncRNA
88280	chr16	83836071	83836300	+	0	NA	Intergenic	Intergenic	28207	NM_001537	3281		NM_001537	ENSG00000230989	HSBP1	NPC-A-13	heat shock factor binding protein 1	protein-coding
177378	chr4	112086771	112086930	+	0	NA	Intergenic	L1PA2|LINE|L1	-58604	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
134213	chr2	134665551	134666280	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	53085	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
32772	chr10	104337681	104339280	+	0	NA	promoter-TSS (NM_001272013)	promoter-TSS (NM_001272013)	-15	NM_001272013	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
42638	chr11	72333621	72334050	+	0	NA	intron (NM_001258394, intron 7 of 17)	intron (NM_001258394, intron 7 of 17)	-89659	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
124551	chr2	419571	421550	+	0	NA	Intergenic	CpG	72095	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
114504	chr19	12781521	12783930	+	0	NA	Intergenic	CpG	-4403	NR_049864	100847071		NR_049864	ENSG00000263800	MIR5684	-	microRNA 5684	ncRNA
39477	chr11	60999001	60999400	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	27520	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
224262	chr9	6015071	6016330	+	0	NA	promoter-TSS (NM_012416)	promoter-TSS (NM_012416)	-76	NM_001243203	26953		NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
132760	chr2	109795971	109796130	+	0	NA	intron (NM_001384364, intron 1 of 22).2	AluSx4|SINE|Alu	1441	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
57935	chr12	123631401	123631600	+	0	NA	intron (NM_001414, intron 2 of 8)	AluSq2|SINE|Alu	2186	NM_001414	1967		NM_001414	ENSG00000111361	EIF2B1	EIF2B|EIF2BA|EIF2Balpha|VWM1	eukaryotic translation initiation factor 2B subunit alpha	protein-coding
101957	chr17	74632071	74632230	+	0	NA	Intergenic	L2c|LINE|L2	-8412	NM_181449	342510		NM_181449	ENSG00000186407	CD300E	CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2	CD300e molecule	protein-coding
231959	chr9	133147201	133148100	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	1560	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
180072	chr5	1099401	1100000	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	12363	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
205891	chr7	25113921	25114400	+	0	NA	Intergenic	AluJr4|SINE|Alu	11100	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
153174	chr22	23831921	23832180	+	0	NA	intron (NM_003073, intron 7 of 8).2	intron (NM_003073, intron 7 of 8).2	6956	NM_001135751	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
25557	chr10	7492171	7493100	+	0	NA	Intergenic	Intergenic	-81149	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
161444	chr3	42081751	42082380	+	0	NA	Intergenic	Intergenic	-5135	NM_001349245	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
33797	chr10	123144571	123145400	+	0	NA	Intergenic	Intergenic	-3137	NM_005519	3167		NM_005519	ENSG00000188816	HMX2	H6L|Nkx5-2	H6 family homeobox 2	protein-coding
204330	chr7	2720851	2721650	+	0	NA	intron (NM_001321766, intron 6 of 6)	intron (NM_001321766, intron 6 of 6)	33048	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
130830	chr2	87072921	87073350	+	0	NA	intron (NR_026846, intron 1 of 10)	intron (NR_026846, intron 1 of 10)	3278	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
98531	chr17	47652751	47653180	+	0	NA	intron (NM_002265, intron 3 of 21)	intron (NM_002265, intron 3 of 21)	1900	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
147197	chr20	57346251	57346750	+	0	NA	Intergenic	Intergenic	-4755	NM_003610	8480		NM_003610	ENSG00000101146	RAE1	Gle2|MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1	ribonucleic acid export 1	protein-coding
231609	chr9	131564071	131564230	+	0	NA	Intergenic	AluSx3|SINE|Alu	18627	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
101607	chr17	68181401	68182100	+	0	NA	Intergenic	AluSx|SINE|Alu	-16910	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
80741	chr16	3141451	3141750	+	0	NA	non-coding (NR_104432, exon 6 of 6)	non-coding (NR_104432, exon 6 of 6)	-2691	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
199412	chr6	116661421	116661680	+	0	NA	intron (NM_001361191, intron 1 of 8)	intron (NM_001361191, intron 1 of 8)	7216	NM_145062	221302		NM_145062	ENSG00000153975	ZUP1	C6orf113|DUB|ZUFSP	zinc finger containing ubiquitin peptidase 1	protein-coding
132491	chr2	105983551	105983650	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-82088	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
84078	chr16	29603971	29604130	+	0	NA	intron (NR_135317, intron 1 of 11)	AluSg|SINE|Alu	-4785	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
167475	chr3	129123301	129124200	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	-1600	NM_001204883	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
156183	chr22	40243651	40244380	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	66090	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
48987	chr12	13144251	13144550	+	0	NA	Intergenic	Intergenic	-40733	NM_001367362	83445		NM_031289	ENSG00000111305	GSG1	-	germ cell associated 1	protein-coding
16601	chr1	155060701	155061930	+	0	NA	intron (NM_003815, intron 19 of 20)	intron (NM_003815, intron 19 of 20)	-2425	NM_182689	1945		NM_005227	ENSG00000243364	EFNA4	EFL4|EPLG4|LERK-4|LERK4	ephrin A4	protein-coding
234089	chrX	9313171	9314030	+	0	NA	Intergenic	L1ME3A|LINE|L1	-149695	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
145036	chr20	38093371	38093530	+	0	NA	Intergenic	AluJo|SINE|Alu	59704	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
38919	chr11	47427971	47428550	+	0	NA	Intergenic	Intergenic	-1821	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
82854	chr16	21518611	21519500	+	0	NA	non-coding (NR_002594, exon 1 of 1)	non-coding (NR_002594, exon 1 of 1)	1389	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
104087	chr17	80257801	80258200	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2852	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
83334	chr16	24956151	24956250	+	0	NA	intron (NM_018054, intron 9 of 18)	intron (NM_018054, intron 9 of 18)	59169	NM_001006634	55114		NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
18088	chr1	160684601	160684800	+	0	NA	intron (NM_001256030, intron 2 of 2)	intron (NM_001256030, intron 2 of 2)	27122	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
81665	chr16	11026951	11027050	+	0	NA	intron (NM_001243403, intron 12 of 20)	intron (NM_001243403, intron 12 of 20)	82436	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
183693	chr5	80759801	80760800	+	0	NA	intron (NM_002439, intron 12 of 23)	intron (NM_002439, intron 12 of 23)	-105317	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
180988	chr5	35802751	35803600	+	0	NA	intron (NM_024867, intron 34 of 36)	intron (NM_024867, intron 34 of 36)	-53716	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
178765	chr4	153348051	153348450	+	0	NA	intron (NM_001253861, intron 1 of 6)	L2b|LINE|L2	3562	NR_045605	84057		NM_032117	ENSG00000121211	MND1	GAJ	meiotic nuclear divisions 1	protein-coding
145655	chr20	44912721	44913180	+	0	NA	intron (NM_001372179, intron 2 of 14)	MIRc|SINE|MIR	2890	NR_134987	80336		NM_001124756	ENSG00000101104	PABPC1L	C20orf119|EPAB|PABPC1L1|dJ1069P2.3	poly(A) binding protein cytoplasmic 1 like	protein-coding
61030	chr13	48187351	48187850	+	0	NA	Intergenic	L2b|LINE|L2	-45606	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
112981	chr19	7868471	7870100	+	0	NA	exon (NM_001190467, exon 6 of 6)	exon (NM_001190467, exon 6 of 6)	5105	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
54577	chr12	92397521	92397830	+	0	NA	Intergenic	Intergenic	-23856	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
128805	chr2	62414821	62415480	+	0	NA	Intergenic	Intergenic	91045	NM_198276	200728		NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
29535	chr10	70903151	70903550	+	0	NA	Intergenic	Intergenic	-14785	NM_001323004	5092		NM_000281	ENSG00000166228	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase 1	protein-coding
81690	chr16	11227051	11227630	+	0	NA	Intergenic	AluJb|SINE|Alu	28842	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
2056	chr1	7902371	7903000	+	0	NA	Intergenic	AluJr|SINE|Alu	38154	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
205773	chr7	23529251	23529730	+	0	NA	intron (NM_001362760, intron 1 of 8)	AluSz|SINE|Alu	2491	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
145905	chr20	45967171	45967500	+	0	NA	intron (NM_022095, intron 6 of 27)	MER91B|DNA|hAT-Tip100	4868	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
193878	chr6	31579271	31579430	+	0	NA	Intergenic	AluJr4|SINE|Alu	3074	NM_002341	4050		NM_002341	ENSG00000227507	LTB	TNFC|TNFSF3|TNLG1C|p33	lymphotoxin beta	protein-coding
122684	chr19	49887201	49887400	+	0	NA	promoter-TSS (NR_039905)	promoter-TSS (NR_039905)	-875	NR_039905	100616314		NR_039905	ENSG00000284394	MIR4750	mir-4750	microRNA 4750	ncRNA
12145	chr1	100131671	100131930	+	0	NA	intron (NM_194292, intron 1 of 16)	MIRc|SINE|MIR	1130	NM_194292	163786		NM_194292	ENSG00000156876	SASS6	MCPH14|SAS-6|SAS6	SAS-6 centriolar assembly protein	protein-coding
67205	chr14	68930221	68930680	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	48852	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
19397	chr1	174153001	174154030	+	0	NA	intron (NR_121197, intron 3 of 3)	intron (NR_121197, intron 3 of 3)	5772	NR_121197	102724601		NR_121197	ENSG00000227373	RABGAP1L-DT	-	RABGAP1L divergent transcript	ncRNA
154412	chr22	35332421	35333030	+	0	NA	intron (NR_156428, intron 7 of 13)	MER112|DNA|hAT-Charlie	-2915	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
147320	chr20	57718471	57719280	+	0	NA	Intergenic	MIRc|SINE|MIR	-7339	NM_199171	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
114492	chr19	12760371	12761350	+	0	NA	Intergenic	L2a|LINE|L2	9069	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
99103	chr17	49181251	49181350	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	28081	NM_031498	2793		NM_031498	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG9|GNGT8|HG3I	G protein subunit gamma transducin 2	protein-coding
220956	chr8	109542521	109542980	+	0	NA	intron (NM_001278938, intron 1 of 6)	intron (NM_001278938, intron 1 of 6)	2124	NM_001278938	9166		NM_004215	ENSG00000147654	EBAG9	EB9|PDAF	estrogen receptor binding site associated antigen 9	protein-coding
14270	chr1	143497551	143497650	+	0	NA	Intergenic	CpG	-72916	NR_027356	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
118964	chr19	38848921	38853450	+	0	NA	intron (NM_001005335, intron 1 of 12).2	CpG-14439	1162	NM_001005335	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
86094	chr16	57644001	57644500	+	0	NA	intron (NM_001370454, intron 2 of 13)	(CA)n|Simple_repeat|Simple_repeat	4758	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
10809	chr1	77779171	77780130	+	0	NA	promoter-TSS (NM_198549)	promoter-TSS (NM_198549)	26	NM_198549	374986		NM_198549	ENSG00000180488	MIGA1	FAM73A	mitoguardin 1	protein-coding
9670	chr1	52699651	52699750	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1353	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
164160	chr3	56776751	56777050	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-1183	NM_001377413	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
192086	chr6	16675301	16675700	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	84684	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
182545	chr5	65721471	65724000	+	0	NA	promoter-TSS (NM_019072)	promoter-TSS (NM_019072)	530	NM_020726	57486		NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
7244	chr1	32345321	32346050	+	0	NA	Intergenic	L2|LINE|L2	-9452	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
53882	chr12	70283471	70283700	+	0	NA	intron (NM_001199302, intron 3 of 16)	intron (NM_001199302, intron 3 of 16)	39871	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
183794	chr5	82165901	82166200	+	0	NA	intron (NM_031482, intron 4 of 7)	intron (NM_031482, intron 4 of 7)	112304	NM_001025	6228		NM_001025	ENSG00000186468	RPS23	BTDD|MABAS|MCINS|PAMAS|S23|uS12	ribosomal protein S23	protein-coding
41508	chr11	66255451	66255980	+	0	NA	Intergenic	Intergenic	-1579	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
172130	chr4	1186121	1186480	+	0	NA	intron (NM_001199021, intron 1 of 7)	L1MB3|LINE|L1	-13089	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
24158	chr1	235862551	235863430	+	0	NA	intron (NM_001301365, intron 1 of 52)	LTR54|LTR|ERV1	3916	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
225518	chr9	35727771	35727930	+	0	NA	intron (NM_006289, intron 1 of 56)	intron (NM_006289, intron 1 of 56)	4345	NM_006289	7094		NM_006289	ENSG00000137076	TLN1	ILWEQ|TLN|talin-1	talin 1	protein-coding
220606	chr8	100917851	100918380	+	0	NA	TTS (NM_001135699)	TTS (NM_001135699)	32456	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
46062	chr11	122741551	122742250	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	86178	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
184325	chr5	96933771	96934000	+	0	NA	Intergenic	Intergenic	-2195	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
122783	chr19	50315751	50316530	+	0	NA	intron (NR_110912, intron 2 of 3)	intron (NR_110912, intron 2 of 3)	12931	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
103031	chr17	77090171	77090650	+	0	NA	TTS (NR_003013)	TTS (NR_003013)	993	NR_106997	102466864		NR_106997	ENSG00000284250	MIR6516	hsa-mir-6516	microRNA 6516	ncRNA
102662	chr17	76079901	76080850	+	0	NA	TTS (NM_015219)	TTS (NM_015219)	1193	NM_180990	353174		NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding
120100	chr19	42134501	42134700	+	0	NA	intron (NR_038332, intron 2 of 2)	intron (NR_038332, intron 2 of 2)	-1087	NR_036208	100422980		NR_036208	ENSG00000266226	MIR4323	-	microRNA 4323	ncRNA
128661	chr2	61452151	61452850	+	0	NA	intron (NM_014709, intron 1 of 79)	AluSx|SINE|Alu	18587	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
141824	chr20	372971	373330	+	0	NA	Intergenic	MIR|SINE|MIR	-7479	NM_021158	57761		NM_021158	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
213530	chr7	139084771	139084930	+	0	NA	intron (NM_020119, intron 2 of 12)	intron (NM_020119, intron 2 of 12)	24870	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
190207	chr5	178220551	178222030	+	0	NA	intron (NM_153373, intron 8 of 12)	L2c|LINE|L2	11512	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
95207	chr17	35240951	35241050	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2072	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
174298	chr4	38492101	38492400	+	0	NA	intron (NR_110951, intron 2 of 7)	intron (NR_110951, intron 2 of 7)	-17517	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
89586	chr16	89275771	89275930	+	0	NA	intron (NM_013275, intron 9 of 12)	L1MC4a|LINE|L1	-20278	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
160011	chr3	18393201	18393600	+	0	NA	intron (NM_001322873, intron 7 of 10)	intron (NM_001322873, intron 7 of 10)	31939	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
35977	chr11	2857521	2858300	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	3659	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
24851	chr10	473451	473550	+	0	NA	intron (NM_014974, intron 2 of 36)	intron (NM_014974, intron 2 of 36)	-155064	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
205674	chr7	23016401	23016600	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2370	NM_001363467	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
238050	chrX	135477601	135477800	+	0	NA	Intergenic	L2a|LINE|L2	-42960	NM_001351601	203522		NM_182540	ENSG00000165359	INTS6L	DDX26B	integrator complex subunit 6 like	protein-coding
103304	chr17	77878221	77878480	+	0	NA	TTS (NR_028337)	TTS (NR_028337)	5737	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
234910	chrX	33041351	33041450	+	0	NA	intron (NM_000109, intron 1 of 78)	intron (NM_000109, intron 1 of 78)	87027	NM_004010	1756		NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85	dystrophin	protein-coding
221503	chr8	124563901	124565480	+	0	NA	intron (NM_001363300, intron 9 of 12)	intron (NM_001363300, intron 9 of 12)	25567	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
66634	chr14	63855051	63856400	+	0	NA	intron (NM_015180, intron 1 of 114)	L2a|LINE|L2	2721	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
150749	chr21	43774251	43774350	+	0	NA	exon (NM_000100, exon 3 of 3)	exon (NM_000100, exon 3 of 3)	2008	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
134078	chr2	131518871	131519030	+	0	NA	intron (NR_026922, intron 15 of 17)	intron (NR_026922, intron 15 of 17)	-8725	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
157321	chr22	44617951	44618050	+	0	NA	intron (NR_044991, intron 3 of 4)	(CA)n|Simple_repeat|Simple_repeat	7419	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
146056	chr20	47400801	47401000	+	0	NA	intron (NR_146496, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	10494	NR_146494	102723442		NR_146494		LINC01754	-	long intergenic non-protein coding RNA 1754	ncRNA
203752	chr7	1168001	1168430	+	0	NA	Intergenic	AluSz|SINE|Alu	7430	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
147577	chr20	61120651	61120850	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	41686	NR_109919	100506470		NR_109919	ENSG00000229606	LINC01718	-	long intergenic non-protein coding RNA 1718	ncRNA
224360	chr9	7226301	7226500	+	0	NA	Intergenic	MLT1H-int|LTR|ERVL-MaLR	468427	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
24396	chr1	243101201	243102280	+	0	NA	promoter-TSS (NR_029401)	promoter-TSS (NR_029401)	4	NR_029401	731275		NR_029401	ENSG00000291217	LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
237857	chrX	130165301	130166430	+	0	NA	promoter-TSS (NM_001130847)	promoter-TSS (NM_001130847)	22	NM_145812	9131		NM_004208	ENSG00000156709	AIFM1	AIF|AUNX1|CMT2D|CMTX4|COWCK|COXPD6|DFNX5|NADMR|NAMSD|PDCD8|SEMDHL	apoptosis inducing factor mitochondria associated 1	protein-coding
107859	chr18	54829851	54829950	+	0	NA	intron (NM_004163, intron 1 of 5)	intron (NM_004163, intron 1 of 5)	1423	NM_004163	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
64951	chr14	35846201	35846400	+	0	NA	intron (NM_032352, intron 4 of 9)	AluJo|SINE|Alu	19962	NM_032352	84312		NM_032352	ENSG00000100916	BRMS1L	BRMS1|p40	BRMS1 like transcriptional repressor	protein-coding
180549	chr5	14662651	14662750	+	0	NA	TTS (NR_168439)	TTS (NR_168439)	1904	NR_168439	728178		NR_168439	ENSG00000261360	OTULIN-DT	-	OTULIN divergent transcript	ncRNA
96821	chr17	41939501	41939700	+	0	NA	intron (NM_031421, intron 7 of 11)	intron (NM_031421, intron 7 of 11)	8983	NR_110662	83538		NM_031421	ENSG00000204815	ODAD4	TTC25	outer dynein arm docking complex subunit 4	protein-coding
34562	chr10	133158771	133159230	+	0	NA	Intergenic	Intergenic	-1219	NM_001347864	85442		NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND	kinase non-catalytic C-lobe domain containing 1	protein-coding
182827	chr5	69191471	69191830	+	0	NA	intron (NM_022909, intron 1 of 8)	intron (NM_022909, intron 1 of 8)	2067	NM_022909	64946		NM_022909	ENSG00000153044	CENPH	-	centromere protein H	protein-coding
204232	chr7	2539121	2540050	+	0	NA	non-coding (NR_146879, exon 13 of 15)	non-coding (NR_146879, exon 13 of 15)	12511	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
38957	chr11	47537801	47538000	+	0	NA	intron (NM_001376458, intron 1 of 13)	intron (NM_001376458, intron 1 of 13)	-13196	NM_001376369	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
174266	chr4	38132131	38133300	+	0	NA	intron (NM_015173, intron 18 of 19)	intron (NM_015173, intron 18 of 19)	12761	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
177219	chr4	108493071	108493300	+	0	NA	Intergenic	L1MA8|LINE|L1	-64048	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
35624	chr11	1807701	1807900	+	0	NA	Intergenic	LTR40a|LTR|ERVL	-26627	NM_138567	90019		NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
162236	chr3	47155551	47155650	+	0	NA	intron (NR_146158, intron 1 of 21)	AluJb|SINE|Alu	8513	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
134934	chr2	151411371	151411530	+	0	NA	intron (NM_018151, intron 3 of 35)	AluSp|SINE|Alu	1548	NM_001177665	55183		NM_018151	ENSG00000080345	RIF1	-	replication timing regulatory factor 1	protein-coding
197734	chr6	87153401	87153800	+	0	NA	Intergenic	Intergenic	-1965	NM_015021	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
113514	chr19	10109221	10109480	+	0	NA	promoter-TSS (NR_003688)	promoter-TSS (NR_003688)	-399	NR_003688	100113382		NR_003688	ENSG00000238531	SNORD105B	-	small nucleolar RNA, C/D box 105B	snoRNA
153594	chr22	27230521	27230600	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-5881	NM_001350812	105372978		NM_001350812	ENSG00000233521	LINC01638	lncRNA4114	long intergenic non-protein coding RNA 1638	ncRNA
25519	chr10	7297071	7297230	+	0	NA	intron (NM_001029880, intron 4 of 20)	intron (NM_001029880, intron 4 of 20)	-110366	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
21511	chr1	205771101	205771300	+	0	NA	intron (NM_001135664, intron 3 of 4)	AluY|SINE|Alu	4282	NM_001135663	8934		NM_003929	ENSG00000117280	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
152745	chr22	21713171	21713980	+	0	NA	intron (NM_013313, intron 1 of 4)	L1MB3|LINE|L1	22219	NM_013313	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
185429	chr5	131162801	131163000	+	0	NA	intron (NR_024610, intron 1 of 3)	AluSx|SINE|Alu	2356	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
96128	chr17	39655001	39655400	+	0	NA	intron (NM_001165938, intron 2 of 13)	AluJo|SINE|Alu	-10149	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
57419	chr12	121841001	121841400	+	0	NA	intron (NM_002150, intron 12 of 13)	AluSx|SINE|Alu	17659	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
68297	chr14	77184521	77184980	+	0	NA	intron (NM_020431, intron 1 of 23)	intron (NM_020431, intron 1 of 23)	2952	NM_020431	57156		NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|SPG87|hsCSC1	transmembrane protein 63C	protein-coding
9918	chr1	54459101	54460000	+	0	NA	Intergenic	L2a|LINE|L2	-53156	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
94392	chr17	28954921	28955650	+	0	NA	3' UTR (NM_001098635, exon 17 of 17)	3' UTR (NM_001098635, exon 17 of 17)	-3767	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
78093	chr15	90247471	90247630	+	0	NA	intron (NR_102428, intron 1 of 6)	intron (NR_102428, intron 1 of 6)	-1982	NR_104604								
133203	chr2	113136821	113137480	+	0	NA	Intergenic	LTR55|LTR|ERVL?	9552	NM_173842	3557		NM_000577	ENSG00000136689	IL1RN	CRMO2|DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4	interleukin 1 receptor antagonist	protein-coding
155848	chr22	39453371	39453530	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3562	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
83555	chr16	28088721	28090150	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-25721	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
66353	chr14	61456451	61457300	+	0	NA	intron (NM_006255, intron 7 of 13)	intron (NM_006255, intron 7 of 13)	113319	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
15594	chr1	150585771	150586330	+	0	NA	Intergenic	Intergenic	-6312	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
34291	chr10	131934951	131935380	+	0	NA	intron (NR_033191, intron 4 of 9)	intron (NR_033191, intron 4 of 9)	34157	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
45646	chr11	119000201	119001000	+	0	NA	intron (NR_104050, intron 3 of 10).2	AluSq|SINE|Alu	2462	NR_104050	338657		NM_198489	ENSG00000186166	CENATAC	CCDC84|DLNB14|MVA4	centrosomal AT-AC splicing factor	protein-coding
216875	chr8	22640571	22640730	+	0	NA	non-coding (NR_027715, exon 1 of 1)	non-coding (NR_027715, exon 1 of 1)	1559	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
44679	chr11	110711701	110712980	+	0	NA	promoter-TSS (NM_001258415)	promoter-TSS (NM_001258415)	97	NM_001384657	57569		NM_020809	ENSG00000137727	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
60051	chr13	32905271	32905430	+	0	NA	intron (NR_047020, intron 3 of 4)	MIR3|SINE|MIR	6302	NR_047020	100874167		NR_047020		LINC00423	-	long intergenic non-protein coding RNA 423	ncRNA
62699	chr13	102801771	102801930	+	0	NA	intron (NM_001159596, intron 1 of 8)	L2c|LINE|L2	2731	NM_017693	54841		NM_017693	ENSG00000134897	BIVM	-	basic, immunoglobulin-like variable motif containing	protein-coding
92818	chr17	16027601	16028750	+	0	NA	TTS (NM_006311)	TTS (NM_006311)	28351	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
96783	chr17	41790401	41791300	+	0	NA	Intergenic	Intergenic	-4082	NM_001352776	3728		NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PG|PKGB	junction plakoglobin	protein-coding
216340	chr8	15378401	15378700	+	0	NA	Intergenic	Intergenic	-140119	NM_001322879	137868		NM_139167	ENSG00000185053	SGCZ	ZSG1	sarcoglycan zeta	protein-coding
117470	chr19	19741201	19741400	+	0	NA	Intergenic	Intergenic	-8188	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
80162	chr16	2108071	2108630	+	0	NA	exon (NM_000296, exon 15 of 46)	exon (NM_000296, exon 15 of 46)	-1597	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
82039	chr16	12147701	12147900	+	0	NA	intron (NM_032167, intron 13 of 20)	intron (NM_032167, intron 13 of 20)	171066	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
197633	chr6	83442771	83442930	+	0	NA	Intergenic	Intergenic	-11799	NM_002395	4199		NM_002395	ENSG00000065833	ME1	HUMNDME|MES	malic enzyme 1	protein-coding
43040	chr11	74024751	74024850	+	0	NA	intron (NM_001286577, intron 32 of 32)	intron (NM_001286577, intron 32 of 32)	-15563	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
38435	chr11	45148771	45148930	+	0	NA	intron (NM_001256695, intron 1 of 7)	L2a|LINE|L2	1507	NM_001256696	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
178839	chr4	153642971	153643750	+	0	NA	intron (NR_134873, intron 2 of 2)	FLAM_C|SINE|Alu	3192	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
40194	chr11	62926171	62927180	+	0	NA	Intergenic	CpG	-5312	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
16177	chr1	153790771	153792130	+	0	NA	Intergenic	AluJr|SINE|Alu	-2497	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
55962	chr12	110042851	110043950	+	0	NA	intron (NM_207435, intron 4 of 4)	L2a|LINE|L2	5247	NR_148516								
13913	chr1	120015251	120015750	+	0	NA	intron (NM_001200001, intron 2 of 21)	intron (NM_001200001, intron 2 of 21)	54162	NM_024408	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
92111	chr17	7585351	7585450	+	0	NA	intron (NM_004870, intron 1 of 6)	AluSx|SINE|Alu	-1308	NR_136402	100996842		NM_001322800	ENSG00000233223	MPDU1-AS1	-	MPDU1 antisense RNA 1	ncRNA
165299	chr3	81762951	81763350	+	0	NA	Intergenic	L2c|LINE|L2	-1505	NM_000158	2632		NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	1,4-alpha-glucan branching enzyme 1	protein-coding
86324	chr16	66270371	66270750	+	0	NA	Intergenic	CpG	-96131	NM_001795	1003		NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
121335	chr19	46782371	46782530	+	0	NA	exon (NM_001145145, exon 3 of 7)	exon (NM_001145145, exon 3 of 7)	2364	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
193657	chr6	30906051	30906150	+	0	NA	Intergenic	AluJo|SINE|Alu	-2107	NM_001517	2968		NM_001517	ENSG00000213780	GTF2H4	P52|TFB2|TFIIH	general transcription factor IIH subunit 4	protein-coding
42282	chr11	68311571	68311800	+	0	NA	promoter-TSS (NM_001291902)	promoter-TSS (NM_001291902)	-906	NM_001291902	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
236245	chrX	65742401	65743150	+	0	NA	TTS (NM_002444)	TTS (NM_002444)	75121	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
191866	chr6	15283501	15283700	+	0	NA	intron (NM_001267040, intron 1 of 17)	AluY|SINE|Alu	34745	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
150776	chr21	43812651	43813180	+	0	NA	promoter-TSS (NR_026961)	promoter-TSS (NR_026961)	-348	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
16379	chr1	154388201	154388400	+	0	NA	Intergenic	Intergenic	-17043	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
230302	chr9	127950851	127951380	+	0	NA	promoter-TSS (NM_203305)	promoter-TSS (NM_203305)	-401	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
175018	chr4	52616151	52616650	+	0	NA	intron (NM_022832, intron 4 of 8)	AluSx|SINE|Alu	40139	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
75937	chr15	70248871	70249030	+	0	NA	Intergenic	Intergenic	-151033	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
118132	chr19	34926721	34927350	+	0	NA	promoter-TSS (NR_110749)	promoter-TSS (NR_110749)	132	NR_024018	90075		NM_194325	ENSG00000168661	ZNF30	KOX28	zinc finger protein 30	protein-coding
223256	chr8	143683971	143685430	+	0	NA	intron (NM_001288808, intron 1 of 3).2	CpG	221	NM_001100598	286075		NM_173831	ENSG00000181135	ZNF707	-	zinc finger protein 707	protein-coding
64248	chr14	23155121	23155580	+	0	NA	promoter-TSS (NM_182728)	promoter-TSS (NM_182728)	-30	NR_049767	23428		NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
224736	chr9	21777351	21777880	+	0	NA	Intergenic	L2a|LINE|L2	-25021	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
38612	chr11	46330871	46331860	+	0	NA	Intergenic	MIRb|SINE|MIR	-1561	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
1515	chr1	2888571	2888730	+	0	NA	Intergenic	Intergenic	-87782	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
92450	chr17	8472201	8472400	+	0	NA	Intergenic	Intergenic	36416	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
111055	chr19	3110271	3111180	+	0	NA	intron (NM_002067, intron 2 of 6)	intron (NM_002067, intron 2 of 6)	16363	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
193907	chr6	31627951	31628350	+	0	NA	exon (NM_080686, exon 12 of 31).2	exon (NM_080686, exon 12 of 31).2	5071	NR_002971	677820		NR_002971	ENSG00000200816	SNORA38	ACA38	small nucleolar RNA, H/ACA box 38	snoRNA
226434	chr9	71604521	71605000	+	0	NA	Intergenic	Intergenic	-157789	NM_001366144	80036		NM_020952	ENSG00000083067	TRPM3	CTRCT50|GON-2|LTRPC3|MLSN2|NEDFSS	transient receptor potential cation channel subfamily M member 3	protein-coding
96056	chr17	39477571	39477730	+	0	NA	intron (NM_016507, intron 2 of 13)	AluY|SINE|Alu	16164	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
173350	chr4	7802101	7802700	+	0	NA	intron (NM_001371091, intron 10 of 17)	intron (NM_001371091, intron 10 of 17)	48310	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
168731	chr3	150761601	150762290	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	1224	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
174683	chr4	41936501	41936700	+	0	NA	intron (NM_018126, intron 1 of 6)	AluJb|SINE|Alu	1171	NM_018126	55161		NM_018126	ENSG00000109133	TMEM33	1600019D15Rik|Pom33|SHINC-3|SHINC3	transmembrane protein 33	protein-coding
69645	chr14	97790871	97791300	+	0	NA	Intergenic	MIR|SINE|MIR	-28254	NR_146447	100132612		NR_146447	ENSG00000258869	LINC02312	-	long intergenic non-protein coding RNA 2312	ncRNA
4055	chr1	19054971	19055330	+	0	NA	Intergenic	Intergenic	-98474	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
171003	chr3	194689371	194690130	+	0	NA	TTS (NM_153690)	TTS (NM_153690)	3867	NM_153690	131583		NM_153690	ENSG00000185112	FAM43A	-	family with sequence similarity 43 member A	protein-coding
208427	chr7	66767551	66767730	+	0	NA	intron (NM_001367731, intron 3 of 10)	MLT1A0|LTR|ERVL-MaLR	11758	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
114985	chr19	14035301	14035500	+	0	NA	intron (NM_004843, intron 2 of 13)	AluSp|SINE|Alu	3638	NM_004843	9466		NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
138429	chr2	205780751	205780850	+	0	NA	intron (NM_201266, intron 15 of 16)	intron (NM_201266, intron 15 of 16)	98299	NM_201267	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
104802	chr17	81740171	81741100	+	0	NA	Intergenic	CpG	28351	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
45428	chr11	118400691	118402400	+	0	NA	promoter-TSS (NM_006476)	promoter-TSS (NM_006476)	-61	NM_006476	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
99078	chr17	48956601	48957230	+	0	NA	Intergenic	AluJr|SINE|Alu	11681	NM_004123	2695		NM_004123	ENSG00000159224	GIP	-	gastric inhibitory polypeptide	protein-coding
26544	chr10	21536651	21537300	+	0	NA	intron (NR_136736, intron 2 of 25)	AluSp|SINE|Alu	2743	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
164313	chr3	57690351	57690950	+	0	NA	intron (NM_152678, intron 1 of 19)	AluSz|SINE|Alu	2427	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
88855	chr16	87637471	87637630	+	0	NA	intron (NM_020655, intron 1 of 4)	intron (NM_020655, intron 1 of 4)	35042	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
151574	chr21	46617451	46617550	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-12418	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
182321	chr5	59020571	59021130	+	0	NA	intron (NM_001364603, intron 7 of 15)	intron (NM_001364603, intron 7 of 15)	18626	NM_001197222	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
183288	chr5	76542171	76543900	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-4374	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
176486	chr4	89901801	89902160	+	0	NA	intron (NM_001371403, intron 2 of 8)	intron (NM_001371403, intron 2 of 8)	7126	NM_007351	22915		NM_007351	ENSG00000138722	MMRN1	ECM|EMILIN4|GPIa*|MMRN	multimerin 1	protein-coding
30605	chr10	80189451	80189550	+	0	NA	intron (NM_001278408, intron 1 of 16)	L1MB3|LINE|L1	14991	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
189960	chr5	177429021	177429950	+	0	NA	intron (NM_001004105, intron 1 of 15)	intron (NM_001004105, intron 1 of 15)	2799	NM_002082	2870		NM_002082	ENSG00000198055	GRK6	GPRK6	G protein-coupled receptor kinase 6	protein-coding
110328	chr19	1866451	1866550	+	0	NA	Intergenic	AluSp|SINE|Alu	-2921	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
44168	chr11	96221171	96222180	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-119763	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
158020	chr22	49913421	49913880	+	0	NA	exon (NM_024105, exon 2 of 10)	exon (NM_024105, exon 2 of 10)	4788	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
98707	chr17	47944921	47945900	+	0	NA	intron (NM_018129, intron 3 of 6)	intron (NM_018129, intron 3 of 6)	3839	NM_018129	55163		NM_018129	ENSG00000108439	PNPO	HEL-S-302|PDXPO	pyridoxamine 5'-phosphate oxidase	protein-coding
44400	chr11	103112171	103112330	+	0	NA	intron (NM_001377, intron 1 of 88)	L2a|LINE|L2	2824	NM_001080463	79659		NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding
167098	chr3	127586751	127587050	+	0	NA	TTS (NR_107016)	TTS (NR_107016)	276	NR_107016	102465857		NR_107016	ENSG00000276083	MIR7976	hsa-mir-7976	microRNA 7976	ncRNA
237351	chrX	118603121	118603380	+	0	NA	intron (NM_144658, intron 23 of 52)	L2a|LINE|L2	107341	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
142777	chr20	12970371	12970530	+	0	NA	Intergenic	Intergenic	-17931	NR_109868	101929486		NR_109868	ENSG00000233048	LINC01722	-	long intergenic non-protein coding RNA 1722	ncRNA
160884	chr3	33714701	33715300	+	0	NA	intron (NM_001375705, intron 1 of 36)	L2a|LINE|L2	3254	NM_001365628	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
157545	chr22	45583571	45583800	+	0	NA	intron (NM_006486, intron 16 of 16)	MER54A|LTR|ERVL	21962	NR_131244	100506737		NR_131244	ENSG00000238120	LINC01589	TCONS_00029353	long intergenic non-protein coding RNA 1589	ncRNA
79729	chr16	1327851	1328300	+	0	NA	Intergenic	Intergenic	-5570	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
9742	chr1	53278171	53279130	+	0	NA	intron (NM_001018054, intron 4 of 17)	intron (NM_001018054, intron 4 of 17)	40040	NR_038953	100507564		NR_038953	ENSG00000226754	MAGOH-DT	-	MAGOH divergent transcript	ncRNA
60826	chr13	45394001	45394430	+	0	NA	3' UTR (NM_001286807, exon 10 of 10)	3' UTR (NM_001286807, exon 10 of 10)	-23947	NR_047031	100874259		NR_047031	ENSG00000251015	SLC25A30-AS1	-	SLC25A30 antisense RNA 1	ncRNA
233833	chrX	1493301	1494730	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-40253	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
148021	chr20	63107371	63107980	+	0	NA	Intergenic	Intergenic	-5356	NR_003245	768097		NR_003245	ENSG00000231133	HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B	ncRNA
26052	chr10	12513871	12514500	+	0	NA	intron (NM_001351032, intron 3 of 11)	intron (NM_001351032, intron 3 of 11)	-64568	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
192534	chr6	25085901	25086950	+	0	NA	intron (NR_002174, intron 11 of 12)	intron (NR_002174, intron 11 of 12)	-44137	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
19027	chr1	169677251	169677580	+	0	NA	Intergenic	LTR16B|LTR|ERVL	31442	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
49804	chr12	31967501	31968430	+	0	NA	intron (NM_018169, intron 2 of 5)	intron (NM_018169, intron 2 of 5)	8550	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
43611	chr11	83178051	83178730	+	0	NA	intron (NM_015885, intron 11 of 15)	(TATTCATG)n|Simple_repeat|Simple_repeat	9094	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
75455	chr15	65836771	65836930	+	0	NA	Intergenic	Intergenic	-32641	NM_004663	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
44861	chr11	114171321	114171780	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	-86256	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
174784	chr4	47932771	47933250	+	0	NA	intron (NR_125879, intron 1 of 2)	LTR27|LTR|ERV1	-18343	NM_001278623	152518		NM_152995	ENSG00000170448	NFXL1	CDZFP|HOZFP|OZFP|URCC5	nuclear transcription factor, X-box binding like 1	protein-coding
184541	chr5	102583721	102583980	+	0	NA	intron (NR_047462, intron 1 of 1)	intron (NR_047462, intron 1 of 1)	2482	NR_047462	100861468		NR_047462	ENSG00000250958	LINC00492	-	long intergenic non-protein coding RNA 492	ncRNA
198700	chr6	108120401	108120700	+	0	NA	Intergenic	Intergenic	-3083	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
97760	chr17	44484371	44484530	+	0	NA	intron (NM_001304940, intron 1 of 9)	intron (NM_001304940, intron 1 of 9)	18956	NM_001002909	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
20926	chr1	202195751	202196050	+	0	NA	intron (NM_001017403, intron 1 of 17)	L3b|LINE|CR1	1910	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
75306	chr15	65284851	65285150	+	0	NA	TTS (NR_145768)	TTS (NR_145768)	591	NR_145768	109617003		NR_145768	ENSG00000206903	SNORA24B	-	small nucleolar RNA, H/ACA box 24B	snoRNA
130903	chr2	87458901	87459180	+	0	NA	intron (NR_024206, intron 1 of 1)	intron (NR_024206, intron 1 of 1)	3613	NR_024206	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
78323	chr15	90957851	90958150	+	0	NA	intron (NM_033544, intron 5 of 8)	intron (NM_033544, intron 5 of 8)	3124	NM_033544	91433		NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
94022	chr17	27197651	27197750	+	0	NA	Intergenic	LTR13|LTR|ERVK	96296	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
57843	chr12	123253371	123253530	+	0	NA	intron (NM_001194995, intron 1 of 2)	intron (NM_001194995, intron 1 of 2)	14804	NM_001270434	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
109478	chr19	810101	810580	+	0	NA	intron (NM_031991, intron 12 of 13)	intron (NM_031991, intron 12 of 13)	-3244	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	mir-3187	microRNA 3187	ncRNA
187745	chr5	143693601	143694450	+	0	NA	Intergenic	Intergenic	14165	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
167066	chr3	126986751	126987080	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-1679	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
31102	chr10	89297571	89298130	+	0	NA	Intergenic	L1M2|LINE|L1	-4196	NM_001547	3433		NM_001547	ENSG00000119922	IFIT2	G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54|ISG-54 K|ISG-54K|ISG54|P54|cig42	interferon induced protein with tetratricopeptide repeats 2	protein-coding
154741	chr22	36477101	36477500	+	0	NA	intron (NM_012473, intron 2 of 3)	AluY|SINE|Alu	4340	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
219147	chr8	66421471	66421830	+	0	NA	non-coding (NR_040434, exon 3 of 3)	non-coding (NR_040434, exon 3 of 3)	7327	NR_040434	100505676		NM_001242759	ENSG00000246145	RRS1-DT	RRS1-AS1	RRS1 divergent transcript	ncRNA
78475	chr15	92899621	92900710	+	0	NA	promoter-TSS (NM_001271)	promoter-TSS (NM_001271)	-159	NM_001271	1106		NM_001271	ENSG00000173575	CHD2	DEE94|EEOC	chromodomain helicase DNA binding protein 2	protein-coding
3695	chr1	16534271	16535930	+	0	NA	non-coding (NR_135764, exon 1 of 2)	non-coding (NR_135764, exon 1 of 2)	552	NR_135764	100132147		NR_135764	ENSG00000233421	LINC01783	-	long intergenic non-protein coding RNA 1783	ncRNA
238444	chrX	151488771	151488930	+	0	NA	Intergenic	Intergenic	-26701	NR_135614	105377213		NR_135614	ENSG00000214915	LOC105377213	-	uncharacterized LOC105377213	ncRNA
224113	chr9	4639951	4640300	+	0	NA	intron (NR_148446, intron 2 of 8)	intron (NR_148446, intron 2 of 8)	22098	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
32506	chr10	102752101	102752530	+	0	NA	intron (NM_001083913, intron 1 of 3)	intron (NM_001083913, intron 1 of 3)	8367	NM_001083913	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
14750	chr1	146002951	146003250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6521	NM_006472	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
203880	chr7	1477651	1477950	+	0	NA	exon (NM_001080453, exon 34 of 48)	exon (NM_001080453, exon 34 of 48)	-18330	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
101443	chr17	67438101	67438700	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSx1|SINE|Alu	-33089	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
164019	chr3	53219901	53221000	+	0	NA	Intergenic	AluJo|SINE|Alu	35572	NM_001064	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
23608	chr1	230126901	230127300	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	59862	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
186155	chr5	134174951	134175400	+	0	NA	intron (NM_170679, intron 1 of 5)	intron (NM_170679, intron 1 of 5)	1775	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
168959	chr3	152382201	152382630	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-41425	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
205120	chr7	6875921	6876380	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-49875	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
130653	chr2	86191051	86191550	+	0	NA	intron (NM_001100169, intron 1 of 14)	AluJo|SINE|Alu	1808	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
97795	chr17	44769671	44770030	+	0	NA	intron (NM_001318933, intron 3 of 26)	intron (NM_001318933, intron 3 of 26)	10862	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
105626	chr18	806601	806950	+	0	NA	intron (NM_005433, intron 1 of 11)	intron (NM_005433, intron 1 of 11)	5467	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
144740	chr20	36587821	36589680	+	0	NA	intron (NM_001199535, intron 2 of 4)	intron (NM_001199535, intron 2 of 4)	14196	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
181774	chr5	50744071	50744230	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	76736	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
85875	chr16	57047651	57048250	+	0	NA	3' UTR (NM_001384973, exon 24 of 24)	3' UTR (NM_001384973, exon 24 of 24)	-44633	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
86968	chr16	68145771	68145930	+	0	NA	intron (NM_173165, intron 3 of 9)	L1MD2|LINE|L1	60480	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
157827	chr22	47208701	47208900	+	0	NA	Intergenic	Intergenic	-136771	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
228235	chr9	97920671	97921500	+	0	NA	intron (NM_001371657, intron 1 of 5)	intron (NM_001371657, intron 1 of 5)	1096	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
237678	chrX	124351751	124352050	+	0	NA	intron (NM_002351, intron 1 of 3)	intron (NM_002351, intron 1 of 3)	5337	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
229925	chr9	126630251	126631200	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	16797	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
156963	chr22	42368351	42370130	+	0	NA	promoter-TSS (NR_120595)	promoter-TSS (NR_120595)	-32	NR_120595	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
131556	chr2	96771901	96772100	+	0	NA	intron (NM_020184, intron 1 of 6)	intron (NM_020184, intron 1 of 6)	11098	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
168609	chr3	149494171	149494330	+	0	NA	intron (NM_004617, intron 3 of 4)	intron (NM_004617, intron 3 of 4)	19553	NM_004617	7104		NM_004617	ENSG00000169903	TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
127583	chr2	42775071	42775430	+	0	NA	intron (NM_012205, intron 4 of 9)	AluSg|SINE|Alu	-10989	NM_148962	165140		NM_148962	ENSG00000162881	OXER1	GPCR|GPR170|TG1019	oxoeicosanoid receptor 1	protein-coding
29114	chr10	68344071	68344230	+	0	NA	TTS (NM_001322449)	TTS (NM_001322449)	-11222	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
145532	chr20	44132201	44133300	+	0	NA	intron (NM_020433, intron 2 of 5)	intron (NM_020433, intron 2 of 5)	54438	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
106025	chr18	8478751	8478860	+	0	NA	Intergenic	Intergenic	-111771	NR_024419	100192426		NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA
24026	chr1	235272821	235273350	+	0	NA	intron (NM_016374, intron 2 of 23)	AluSx|SINE|Alu	-54131	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
90893	chr17	2400701	2402830	+	0	NA	promoter-TSS (NM_020310)	promoter-TSS (NM_020310)	-705	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
19199	chr1	172399171	172399950	+	0	NA	intron (NM_001350206, intron 20 of 20)	intron (NM_001350206, intron 20 of 20)	-21125	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
140478	chr2	233183251	233183750	+	0	NA	intron (NM_001017915, intron 19 of 26).2	intron (NM_001017915, intron 19 of 26).2	-68071	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
6629	chr1	28916601	28917200	+	0	NA	intron (NM_001376013, intron 1 of 20)	AluJo|SINE|Alu	2324	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
90922	chr17	2600001	2600980	+	0	NA	intron (NM_000430, intron 1 of 10)	AluSq2|SINE|Alu	6836	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
191898	chr6	15386201	15386400	+	0	NA	intron (NM_001267040, intron 2 of 17)	intron (NM_001267040, intron 2 of 17)	137445	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
87931	chr16	79296371	79296730	+	0	NA	Intergenic	Intergenic	304187	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
58582	chr12	132448871	132449030	+	0	NA	Intergenic	AluSc8|SINE|Alu	-41201	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
119997	chr19	41921671	41922130	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	6549	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
159917	chr3	16947001	16947200	+	0	NA	intron (NM_015184, intron 1 of 5)	AluJr|SINE|Alu	13904	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
58318	chr12	131093101	131093600	+	0	NA	intron (NM_001330497, intron 16 of 25)	intron (NM_001330497, intron 16 of 25)	-71661	NR_026670	116437		NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
189648	chr5	176195601	176196300	+	0	NA	intron (NR_036494, intron 1 of 25)	intron (NR_036494, intron 1 of 25)	3345	NR_036494	643201		NR_036494	ENSG00000248596	CEP192P1	-	CEP192 pseudogene 1	pseudo
134162	chr2	134244371	134244800	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-9487	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
180576	chr5	14768001	14768280	+	0	NA	intron (NM_054027, intron 2 of 11)	intron (NM_054027, intron 2 of 11)	55446	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
50745	chr12	48993851	48994780	+	0	NA	TTS (NM_015086)	TTS (NM_015086)	-4032	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
161707	chr3	43688951	43689250	+	0	NA	intron (NM_001346468, intron 1 of 12)	MSTA|LTR|ERVL-MaLR	-1770	NM_001365650	51099		NM_016006	ENSG00000011198	ABHD5	CGI58|IECN2|NCIE2	abhydrolase domain containing 5, lysophosphatidic acid acyltransferase	protein-coding
181673	chr5	50437971	50438430	+	0	NA	intron (NM_198449, intron 1 of 8)	MIR|SINE|MIR	3088	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
171309	chr3	195961801	195962830	+	0	NA	intron (NR_003264, intron 16 of 16)	intron (NR_003264, intron 16 of 16)	27964	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
65797	chr14	54709651	54709750	+	0	NA	intron (NM_001161576, intron 2 of 10)	intron (NM_001161576, intron 2 of 10)	-45133	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
227815	chr9	93245271	93245630	+	0	NA	intron (NM_001282394, intron 6 of 29)	intron (NM_001282394, intron 6 of 29)	60520	NM_006648	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
130754	chr2	86813471	86813930	+	0	NA	Intergenic	L1MCa|LINE|L1	-5304	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
1817	chr1	6238821	6239380	+	0	NA	non-coding (NR_103534, exon 5 of 5)	non-coding (NR_103534, exon 5 of 5)	2860	NR_103534	148645		NM_153709		ICMT-DT	C1orf211|LINC00337|NCRNA00337	ICMT divergent transcript	ncRNA
126410	chr2	27656801	27657200	+	0	NA	intron (NM_001282731, intron 4 of 5)	L2a|LINE|L2	-6471	NM_018158	22950		NM_018158	ENSG00000163798	SLC4A1AP	HLC3	solute carrier family 4 member 1 adaptor protein	protein-coding
102916	chr17	76569401	76570050	+	0	NA	intron (NM_006456, intron 6 of 8)	intron (NM_006456, intron 6 of 8)	8092	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
158593	chr3	4804721	4805580	+	0	NA	intron (NM_002222, intron 50 of 57)	MLT1K|LTR|ERVL-MaLR	-53560	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
120157	chr19	42235201	42235600	+	0	NA	intron (NM_019884, intron 4 of 10)	intron (NM_019884, intron 4 of 10)	7202	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
118513	chr19	35975571	35975950	+	0	NA	Intergenic	Intergenic	-19428	NM_001042631	644096		NM_001042631	ENSG00000205138	SDHAF1	LYRM8|MC2DN2	succinate dehydrogenase complex assembly factor 1	protein-coding
32702	chr10	104035201	104035400	+	0	NA	exon (NM_000494, exon 50 of 56)	exon (NM_000494, exon 50 of 56)	12886	NR_030760	100126326		NR_030760	ENSG00000283788	MIR936	MIRN936|hsa-mir-936	microRNA 936	ncRNA
190250	chr5	178629971	178630130	+	0	NA	Intergenic	AluSx4|SINE|Alu	-3000	NM_020666	57396		NM_020666	ENSG00000113240	CLK4	-	CDC like kinase 4	protein-coding
239466	chrY	56726071	56726480	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-227980	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
165026	chr3	71401901	71402100	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-97229	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
70533	chr14	102504901	102505880	+	0	NA	3' UTR (NM_152326, exon 4 of 4)	3' UTR (NM_152326, exon 4 of 4)	4386	NM_152326	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
51809	chr12	53416101	53416500	+	0	NA	3' UTR (NM_003109, exon 6 of 6)	3' UTR (NM_003109, exon 6 of 6)	-7555	NM_001164691	269		NM_020547	ENSG00000135409	AMHR2	AMHR|MISR2|MISRII|MRII	anti-Mullerian hormone receptor type 2	protein-coding
80908	chr16	3734371	3735450	+	0	NA	intron (NM_004380, intron 28 of 30)	intron (NM_004380, intron 28 of 30)	-17386	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
55801	chr12	108691201	108692550	+	0	NA	intron (NM_014325, intron 2 of 10)	intron (NM_014325, intron 2 of 10)	11123	NM_001105237	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
197082	chr6	56843271	56843700	+	0	NA	promoter-TSS (NR_125866)	promoter-TSS (NR_125866)	162	NM_183380	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
55495	chr12	104750151	104750480	+	0	NA	intron (NM_018413, intron 2 of 2)	Charlie29a|DNA|hAT-Charlie	158682	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
60447	chr13	41012171	41012800	+	0	NA	intron (NM_001370329, intron 1 of 9)	L1ME3C|LINE|L1	6831	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
142799	chr20	13784521	13785850	+	0	NA	promoter-TSS (NM_016649)	promoter-TSS (NM_016649)	157	NR_147982	79133		NM_024120	ENSG00000101247	NDUFAF5	C20orf7|MC1DN16|bA526K24.2|dJ842G6.1	NADH:ubiquinone oxidoreductase complex assembly factor 5	protein-coding
83626	chr16	28259471	28260130	+	0	NA	Intergenic	L2c|LINE|L2	-32725	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
152469	chr22	20711401	20711800	+	0	NA	intron (NM_001362863, intron 49 of 53)	intron (NM_001362863, intron 49 of 53)	10486	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
238007	chrX	134865521	134865980	+	0	NA	Intergenic	Intergenic	49507	NM_001306188	56180		NM_019556	ENSG00000101928	MOSPD1	DJ473B4	motile sperm domain containing 1	protein-coding
108009	chr18	58721801	58722200	+	0	NA	intron (NM_173844, intron 8 of 15)	intron (NM_173844, intron 8 of 15)	-50127	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
55108	chr12	98516201	98517030	+	0	NA	promoter-TSS (NR_027157)	promoter-TSS (NR_027157)	-389	NR_027157	100128191		NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
85020	chr16	31694421	31694800	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6003	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
55460	chr12	104669801	104670700	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	78617	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
111583	chr19	4079151	4079450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12401	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
212703	chr7	129776901	129777550	+	0	NA	Intergenic	Intergenic	-2211	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
107666	chr18	49041921	49042250	+	0	NA	3' UTR (NM_001374442, exon 12 of 12)	3' UTR (NM_001374442, exon 12 of 12)	7683	NR_039898	100616420		NR_039898	ENSG00000263849	MIR4744	-	microRNA 4744	ncRNA
110686	chr19	2279621	2280100	+	0	NA	intron (NM_198532, intron 2 of 3)	AluSx1|SINE|Alu	2315	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
155867	chr22	39488001	39488200	+	0	NA	exon (NM_002409, exon 2 of 2)	exon (NM_002409, exon 2 of 2)	876	NM_001098270	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
207160	chr7	43592751	43593450	+	0	NA	intron (NM_004760, intron 1 of 6)	L1PB4|LINE|L1	9992	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
234617	chrX	19839501	19840400	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	-6799	NM_001353895	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
33387	chr10	117553371	117553530	+	0	NA	Intergenic	CpG	-8382	NR_002791	196047		NR_002791	ENSG00000229847	EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
210180	chr7	98642251	98642350	+	0	NA	Intergenic	Intergenic	25015	NM_002523	4885		NM_002523	ENSG00000106236	NPTX2	NARP|NP-II|NP2	neuronal pentraxin 2	protein-coding
43319	chr11	76318451	76319130	+	0	NA	Intergenic	Intergenic	62175	NR_130898	5612		NM_004705	ENSG00000137492	THAP12	DAP4|P52rIPK|PRKRIR|THAP0	THAP domain containing 12	protein-coding
131752	chr2	98459771	98460150	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	13950	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
104619	chr17	81427071	81427230	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	24038	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
104787	chr17	81720601	81720800	+	0	NA	3' UTR (NM_001270888, exon 11 of 11)	3' UTR (NM_001270888, exon 11 of 11)	8416	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
54120	chr12	76470421	76471180	+	0	NA	intron (NM_001319653, intron 2 of 23)	intron (NM_001319653, intron 2 of 23)	-47515	NM_001319655	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
16671	chr1	155183801	155184380	+	0	NA	exon (NM_001282378, exon 9 of 9)	exon (NM_001282378, exon 9 of 9)	8819	NM_001204287	4582		NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|ADTKD2|CA 15-3|CD227|Ca15-3|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding
78116	chr15	90308101	90308300	+	0	NA	Intergenic	Intergenic	41247	NR_028287	23766		NM_032568		GABARAPL3	ATG8D	GABA type A receptor associated protein like 3 (pseudogene)	pseudo
234789	chrX	24010421	24010680	+	0	NA	intron (NM_030624, intron 2 of 3)	intron (NM_030624, intron 2 of 3)	16636	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
145736	chr20	45073221	45073680	+	0	NA	intron (NM_001352385, intron 11 of 11)	intron (NM_001352385, intron 11 of 11)	27677	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
58786	chr12	132758351	132758450	+	0	NA	intron (NM_015114, intron 1 of 12)	AluSz|SINE|Alu	3432	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
92617	chr17	10062921	10063250	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-26428	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
218885	chr8	60576801	60577000	+	0	NA	intron (NM_002865, intron 3 of 7)	intron (NM_002865, intron 3 of 7)	59913	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
84008	chr16	29459251	29459350	+	0	NA	promoter-TSS (NM_177552)	promoter-TSS (NM_177552)	-613	NM_177552	6818		NM_003166	ENSG00000261052	SULT1A3	HAST|HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|ST1A5|STM|TL-PST	sulfotransferase family 1A member 3	protein-coding
208902	chr7	73858771	73858930	+	0	NA	Intergenic	LTR40b|LTR|ERVL	-2309	NM_182504	135886		NM_182504	ENSG00000175877	TMEM270	WBSCR28	transmembrane protein 270	protein-coding
222901	chr8	142801321	142801580	+	0	NA	Intergenic	Intergenic	-14911	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
212954	chr7	130949051	130949230	+	0	NA	intron (NR_109853, intron 4 of 5)	intron (NR_109853, intron 4 of 5)	35676	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
75548	chr15	66850921	66852050	+	0	NA	Intergenic	Intergenic	105030	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
32348	chr10	102322851	102323330	+	0	NA	intron (NR_165087, intron 3 of 38)	MLT1H1|LTR|ERVL-MaLR	-71020	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
17337	chr1	156479701	156479900	+	0	NA	intron (NM_001271629, intron 4 of 10)	intron (NM_001271629, intron 4 of 10)	10887	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
27560	chr10	32348501	32349000	+	0	NA	intron (NR_104163, intron 1 of 1)	L2c|LINE|L2	1386	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
205218	chr7	7944251	7945450	+	0	NA	Intergenic	Intergenic	23902	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
193422	chr6	30458371	30458900	+	0	NA	Intergenic	AluSz6|SINE|Alu	-30874	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
162178	chr3	46994271	46994430	+	0	NA	intron (NM_001365116, intron 10 of 52)	intron (NM_001365116, intron 10 of 52)	6360	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
98219	chr17	46143871	46144950	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	48372	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
166625	chr3	119558651	119558950	+	0	NA	intron (NM_005191, intron 1 of 6)	intron (NM_005191, intron 1 of 6)	814	NM_005191	941		NM_005191	ENSG00000121594	CD80	B7|B7-1|B7.1|BB1|CD28LG|CD28LG1|LAB7	CD80 molecule	protein-coding
211815	chr7	108003101	108003480	+	0	NA	promoter-TSS (NM_002291)	promoter-TSS (NM_002291)	-129	NM_002291	3912		NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding
180772	chr5	32168471	32168630	+	0	NA	intron (NM_022130, intron 1 of 3)	intron (NM_022130, intron 1 of 3)	5769	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
212604	chr7	129146101	129146650	+	0	NA	intron (NM_178562, intron 1 of 7)	MIR3|SINE|MIR	1668	NM_178562	340348		NM_178562	ENSG00000158457	TSPAN33	PEN|PEN.|TSPAN-33	tetraspanin 33	protein-coding
222651	chr8	141168801	141169580	+	0	NA	intron (NM_014957, intron 13 of 22)	intron (NM_014957, intron 13 of 22)	40601	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
208652	chr7	73051871	73052030	+	0	NA	intron (NM_001382563, intron 4 of 6).2	intron (NM_001382563, intron 4 of 6).2	4614	NM_001382563	105180390		NM_001382563	ENSG00000286038	SPDYE13	SPDYE13P	speedy/RINGO cell cycle regulator family member E13	protein-coding
213362	chr7	135710801	135711180	+	0	NA	intron (NM_012450, intron 2 of 15)	intron (NM_012450, intron 2 of 15)	17196	NM_001318192	26266		NM_012450	ENSG00000164707	SLC13A4	NAS2|SUT-1|SUT1	solute carrier family 13 member 4	protein-coding
201203	chr6	143505271	143505530	+	0	NA	intron (NM_032020, intron 2 of 6)	AluJr|SINE|Alu	6320	NM_032020	2519		NM_032020	ENSG00000001036	FUCA2	dJ20N2.5	alpha-L-fucosidase 2	protein-coding
132060	chr2	101223701	101224280	+	0	NA	Intergenic	Intergenic	-28896	NM_017546	55571		NM_017546	ENSG00000158435	CNOT11	C2orf29|C40	CCR4-NOT transcription complex subunit 11	protein-coding
27595	chr10	32458301	32458550	+	0	NA	intron (NR_109826, intron 4 of 16)	L1MA5|LINE|L1	12285	NR_109827	79741		NM_024688	ENSG00000216937	CCDC7	BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68	coiled-coil domain containing 7	protein-coding
39407	chr11	60840121	60841000	+	0	NA	Intergenic	Intergenic	-1553	NM_024098	79080		NM_024098	ENSG00000110104	CCDC86	Cgr1	coiled-coil domain containing 86	protein-coding
68464	chr14	86055751	86055850	+	0	NA	intron (NR_110155, intron 1 of 3)	intron (NR_110155, intron 1 of 3)	121122	NR_110155	101928767		NR_110155	ENSG00000258733	LINC02328	-	long intergenic non-protein coding RNA 2328	ncRNA
138204	chr2	202676171	202676530	+	0	NA	intron (NM_173511, intron 1 of 7)	MLT1F2|LTR|ERVL-MaLR	41381	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
93033	chr17	17279751	17282080	+	0	NA	promoter-TSS (NM_001199125)	promoter-TSS (NM_001199125)	-217	NM_001199125	8533		NM_003653	ENSG00000141030	COPS3	CSN3|SGN3	COP9 signalosome subunit 3	protein-coding
123761	chr19	55087871	55088030	+	0	NA	TTS (NM_017729).3	TTS (NM_017729).3	7558	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
185810	chr5	132438901	132439200	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	28121	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
42966	chr11	73758771	73759130	+	0	NA	intron (NM_198896, intron 1 of 7)	intron (NM_198896, intron 1 of 7)	1143	NM_001243719	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
150572	chr21	43160501	43160900	+	0	NA	Intergenic	Intergenic	-8308	NM_000394	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
222378	chr8	133666751	133667200	+	0	NA	intron (NR_134462, intron 1 of 2)	intron (NR_134462, intron 1 of 2)	17091	NR_134462	105375773		NR_134462	ENSG00000289906	LINC03024	-	long intergenic non-protein coding RNA 3024	ncRNA
28507	chr10	50310871	50311050	+	0	NA	intron (NM_147156, intron 9 of 10)	intron (NM_147156, intron 9 of 10)	-59444	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
155438	chr22	38462551	38462850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5362	NM_016657	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
127055	chr2	37321451	37321750	+	0	NA	intron (NM_005813, intron 1 of 18)	L2b|LINE|L2	3233	NM_005813	23683		NM_005813	ENSG00000115825	PRKD3	EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU	protein kinase D3	protein-coding
96744	chr17	41690751	41691500	+	0	NA	3' UTR (NM_005801, exon 4 of 4)	3' UTR (NM_005801, exon 4 of 4)	2240	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
109795	chr19	1151251	1152230	+	0	NA	intron (NM_014963, intron 2 of 31)	AluSx1|SINE|Alu	-19519	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
224532	chr9	19227371	19227530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3243	NM_001330640	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
117335	chr19	19526621	19527300	+	0	NA	intron (NM_015965, intron 2 of 4)	intron (NM_015965, intron 2 of 4)	-1951	NM_001190328	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
72404	chr15	31398251	31398350	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	71465	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
161882	chr3	45941751	45942350	+	0	NA	intron (NM_024513, intron 14 of 17)	intron (NM_024513, intron 14 of 17)	-1414	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
173801	chr4	17729251	17729350	+	0	NA	intron (NM_015688, intron 1 of 17)	L1PA4|LINE|L1	52321	NM_015688	27146		NM_015688	ENSG00000047662	FAM184B	-	family with sequence similarity 184 member B	protein-coding
66018	chr14	58264621	58265280	+	0	NA	TTS (NR_029435)	TTS (NR_029435)	20107	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
31094	chr10	89253421	89253680	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-1511	NM_001288979	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
52642	chr12	56281701	56282100	+	0	NA	intron (NM_004077, intron 6 of 10)	AluSx4|SINE|Alu	14574	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
178449	chr4	148052021	148053080	+	0	NA	intron (NM_024605, intron 20 of 22)	intron (NM_024605, intron 20 of 22)	269955	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
16520	chr1	154933171	154933330	+	0	NA	intron (NM_001323012, intron 1 of 4)	AluSq2|SINE|Alu	3469	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
119979	chr19	41903301	41904650	+	0	NA	intron (NM_004706, intron 20 of 28)	intron (NM_004706, intron 20 of 28)	19532	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
188694	chr5	157294501	157294700	+	0	NA	intron (NM_001291721, intron 3 of 29)	MER5A1|DNA|hAT-Charlie	25276	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
168812	chr3	152217221	152217480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11921	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
123490	chr19	54194971	54195330	+	0	NA	TTS (NM_024075)	TTS (NM_024075)	3842	NM_001077446	79042		NM_024075	ENSG00000170892	TSEN34	LENG5|PCH2C|SEN34|SEN34L	tRNA splicing endonuclease subunit 34	protein-coding
189305	chr5	172134871	172135230	+	0	NA	intron (NM_005990, intron 2 of 18)	L1M4|LINE|L1	53174	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
206708	chr7	36516051	36516500	+	0	NA	intron (NM_001177506, intron 20 of 21)	(AC)n|Simple_repeat|Simple_repeat	83845	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
239498	chrY	56757671	56757850	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-196495	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
108303	chr18	63365721	63366660	+	0	NA	intron (NM_002035, intron 1 of 9)	intron (NM_002035, intron 1 of 9)	1016	NM_002035	2531		NM_002035	ENSG00000119537	KDSR	DHSR|EKVP4|FVT1|SDR35C1	3-ketodihydrosphingosine reductase	protein-coding
71606	chr14	106638801	106639380	+	0	NA	Intergenic	Intergenic	156651	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
105388	chr17	82716171	82718480	+	0	NA	intron (NM_024619, intron 1 of 5)	CpG	619	NM_024619	79672		NM_024619	ENSG00000141560	FN3KRP	FN3KL	fructosamine 3 kinase related protein	protein-coding
145113	chr20	38779251	38779550	+	0	NA	Intergenic	AluSq|SINE|Alu	-26297	NM_001172735	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
5572	chr1	25927471	25927850	+	0	NA	Intergenic	Intergenic	-20783	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
231304	chr9	130050471	130051030	+	0	NA	Intergenic	AluJo|SINE|Alu	-2956	NM_001287346	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
36690	chr11	8687471	8687950	+	0	NA	3' UTR (NM_000990, exon 5 of 5)	3' UTR (NM_000990, exon 5 of 5)	2271	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
150465	chr21	42530401	42530600	+	0	NA	intron (NM_018964, intron 4 of 20)	intron (NM_018964, intron 4 of 20)	16648	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
231031	chr9	129605971	129606550	+	0	NA	Intergenic	Intergenic	-2624	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
140795	chr2	235955051	235955150	+	0	NA	intron (NM_001037131, intron 12 of 17)	MIR3|SINE|MIR	213286	NM_001301687	2637		NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
17906	chr1	160192121	160192380	+	0	NA	intron (NM_001231, intron 1 of 10)	intron (NM_001231, intron 1 of 10)	1675	NM_001231	844		NM_001231	ENSG00000143318	CASQ1	CASQ|CSQ1|PDIB1|VMCQA	calsequestrin 1	protein-coding
62021	chr13	85032251	85032350	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	115757	NR_126383	104355140		NR_126383	ENSG00000226370	LINC00375	-	long intergenic non-protein coding RNA 375	ncRNA
237800	chrX	129925451	129926000	+	0	NA	intron (NM_001166221, intron 11 of 13)	L3|LINE|CR1	19561	NM_006649	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
141108	chr2	238505371	238505750	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	49939	NR_037809	151171		NR_037809	ENSG00000225493	LINC01107	-	long intergenic non-protein coding RNA 1107	ncRNA
136405	chr2	176149471	176149830	+	0	NA	promoter-TSS (NR_029609)	promoter-TSS (NR_029609)	-653	NR_029609	406903		NR_029609	ENSG00000207744	MIR10B	MIRN10B|hsa-mir-10b|miRNA10B|mir-10b	microRNA 10b	ncRNA
173665	chr4	14835971	14836130	+	0	NA	intron (NR_126435, intron 2 of 6)	intron (NR_126435, intron 2 of 6)	52119	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
36665	chr11	8092751	8092930	+	0	NA	TTS (NR_144485)	TTS (NR_144485)	11629	NM_177972	7275		NM_003320	ENSG00000166402	TUB	RDOB|rd5	TUB bipartite transcription factor	protein-coding
188793	chr5	157860301	157860500	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-1255	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
167232	chr3	128482701	128483330	+	0	NA	intron (NM_032638, intron 4 of 5)	intron (NM_032638, intron 4 of 5)	4906	NM_001145662	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
56227	chr12	111766601	111767200	+	0	NA	promoter-TSS (NM_000690)	promoter-TSS (NM_000690)	-33	NM_000690	217		NM_000690	ENSG00000111275	ALDH2	ALDH-E2|ALDHI|ALDM	aldehyde dehydrogenase 2 family member	protein-coding
107698	chr18	49491771	49493150	+	0	NA	promoter-TSS (NM_000985)	promoter-TSS (NM_000985)	4	NM_001199344	6139		NM_000985	ENSG00000265681	RPL17	L17|PD-1|RPL23|uL22	ribosomal protein L17	protein-coding
219072	chr8	65825671	65826030	+	0	NA	intron (NM_001242318, intron 1 of 12)	L2a|LINE|L2	16214	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
113963	chr19	10796721	10798380	+	0	NA	intron (NM_001005362, intron 10 of 19)	intron (NM_001005362, intron 10 of 19)	17296	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
225740	chr9	37035551	37035880	+	0	NA	Intergenic	Intergenic	-1447	NM_001280556	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
23807	chr1	234372971	234374500	+	0	NA	promoter-TSS (NR_125962)	promoter-TSS (NR_125962)	34	NM_001301733	388753		NM_001012985	ENSG00000168275	COA6	C1orf31|CEMCOX4|MC4DN13	cytochrome c oxidase assembly factor 6	protein-coding
34766	chr11	200501	201080	+	0	NA	TTS (NM_001286136)	TTS (NM_001286136)	4029	NM_053280	113746		NM_053280	ENSG00000177947	CIMAP1A	CT135|ODF3|SHIPPO1|TISP50	ciliary microtubule associated protein 1A	protein-coding
203556	chr7	892221	893650	+	0	NA	intron (NM_015949, intron 6 of 8)	intron (NM_015949, intron 6 of 8)	16381	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
26583	chr10	22000171	22000530	+	0	NA	intron (NM_022365, intron 1 of 11)	L2a|LINE|L2	3380	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
137384	chr2	196204901	196205300	+	0	NA	intron (NM_001348768, intron 28 of 28)	intron (NM_001348768, intron 28 of 28)	-33522	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
144518	chr20	35702101	35702300	+	0	NA	non-coding (NR_040724, exon 18 of 18)	non-coding (NR_040724, exon 18 of 18)	2795	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
138810	chr2	216184671	216184830	+	0	NA	intron (NM_021141, intron 16 of 20)	AluSx|SINE|Alu	-32139	NR_037701	150967		NM_001199924	ENSG00000260804	LINC01963	PKI55	long intergenic non-protein coding RNA 1963	ncRNA
27829	chr10	38097451	38097550	+	0	NA	intron (NM_001324256, intron 5 of 7)	AluSg|SINE|Alu	3163	NM_001324247	7587		NM_003421	ENSG00000075407	ZNF37A	KOX21|ZNF37	zinc finger protein 37A	protein-coding
90420	chr17	1344571	1345030	+	0	NA	non-coding (NR_024058, exon 7 of 7)	non-coding (NR_024058, exon 7 of 7)	55422	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
189667	chr5	176384401	176384730	+	0	NA	intron (NR_134316, intron 3 of 3)	AluJb|SINE|Alu	4033	NM_001256540	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
54731	chr12	93675201	93675400	+	0	NA	Intergenic	AluJb|SINE|Alu	-2071	NM_001320100	8738		NM_003805	ENSG00000169372	CRADD	MRT34|RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding
186714	chr5	139010871	139011400	+	0	NA	intron (NM_022464, intron 7 of 9)	L1PA2|LINE|L1	135735	NM_001324008	1495		NM_001903	ENSG00000044115	CTNNA1	CAP102|MDBS2|MDPT2	catenin alpha 1	protein-coding
233443	chr9	137623671	137623830	+	0	NA	intron (NM_001354612, intron 1 of 8)	HAL1|LINE|L1	4745	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
187469	chr5	142135921	142136380	+	0	NA	intron (NM_030571, intron 4 of 7)	intron (NM_030571, intron 4 of 7)	27371	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
131880	chr2	98724951	98725430	+	0	NA	intron (NM_012214, intron 2 of 15)	intron (NM_012214, intron 2 of 15)	5942	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
4252	chr1	19606571	19607300	+	0	NA	promoter-TSS (NR_077246)	promoter-TSS (NR_077246)	-872	NR_077246	644068		NR_077246		RPS14P3	RPS14_1_16	ribosomal protein S14 pseudogene 3	pseudo
943	chr1	1741271	1741430	+	0	NA	intron (NM_182838, intron 1 of 5)	AluSc8|SINE|Alu	4649	NM_182838	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
207313	chr7	44031701	44032500	+	0	NA	intron (NR_024116, intron 6 of 8)	AluJr|SINE|Alu	-6949	NR_072982	255031		NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
184416	chr5	98921271	98921430	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-7212	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
204098	chr7	2117971	2118550	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-29208	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
214864	chr7	151378721	151379400	+	0	NA	TTS (NM_001363529)	TTS (NM_001363529)	-30101	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
84173	chr16	29813221	29813950	+	0	NA	exon (NM_001256443, exon 2 of 2)	exon (NM_001256443, exon 2 of 2)	1392	NM_001256443	112476		NM_145239	ENSG00000167371	PRRT2	BFIC2|BFIS2|DSPB3|DYT10|EKD1|FICCA|ICCA|IFITMD1|PKC	proline rich transmembrane protein 2	protein-coding
135694	chr2	168885171	168885330	+	0	NA	intron (NM_020675, intron 3 of 6)	L2|LINE|L2	5180	NM_020675	57405		NM_020675	ENSG00000152253	SPC25	AD024|SPBC25|hSpc25	SPC25 component of NDC80 kinetochore complex	protein-coding
186613	chr5	138529701	138530980	+	0	NA	intron (NM_001291975, intron 2 of 11)	AluSx1|SINE|Alu	11371	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
31968	chr10	100738471	100738630	+	0	NA	intron (NM_001374303, intron 1 of 2)	intron (NM_001374303, intron 1 of 2)	3154	NM_001304569	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
224655	chr9	20927221	20927680	+	0	NA	intron (NM_017794, intron 28 of 45)	MIRc|SINE|MIR	104190	NM_001321883	401494		NM_001010915	ENSG00000188921	HACD4	PTPLAD2	3-hydroxyacyl-CoA dehydratase 4	protein-coding
85365	chr16	50268501	50268950	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	2174	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
193950	chr6	31678651	31678950	+	0	NA	intron (NM_025262, intron 2 of 2).5	AluSx|SINE|Alu	1573	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
173307	chr4	7194451	7194750	+	0	NA	intron (NM_020777, intron 1 of 26)	intron (NM_020777, intron 1 of 26)	2062	NM_020777	57537		NM_020777	ENSG00000184985	SORCS2	-	sortilin related VPS10 domain containing receptor 2	protein-coding
137230	chr2	191636271	191636830	+	0	NA	Intergenic	Intergenic	-41522	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
121470	chr19	47094841	47095980	+	0	NA	intron (NM_015168, intron 2 of 14)	intron (NM_015168, intron 2 of 14)	18366	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
163709	chr3	52281851	52282680	+	0	NA	Intergenic	MER84|LTR|ERV1	-3616	NM_025222	80335		NM_025222	ENSG00000164091	WDR82	MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A	WD repeat domain 82	protein-coding
55073	chr12	96516521	96517200	+	0	NA	intron (NM_001367885, intron 5 of 68)	intron (NM_001367885, intron 5 of 68)	27283	NM_001367885	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
47550	chr12	4288571	4288730	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-12466	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
85390	chr16	50291151	50292080	+	0	NA	intron (NM_001114, intron 3 of 25)	intron (NM_001114, intron 3 of 25)	-1001	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
224905	chr9	32529551	32530030	+	0	NA	Intergenic	MER57E2|LTR|ERV1	-3594	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
226844	chr9	77980221	77980680	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	51361	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
135793	chr2	169820101	169820500	+	0	NA	intron (NM_001293186, intron 4 of 7)	intron (NM_001293186, intron 4 of 7)	4021	NR_145754	109617017		NR_145754		SNORD3K	-	small nucleolar RNA, C/D box 3K	snoRNA
95719	chr17	38568501	38568700	+	0	NA	intron (NM_025248, intron 2 of 18)	L2c|LINE|L2	37352	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
91711	chr17	6548501	6548850	+	0	NA	intron (NM_001165966, intron 1 of 18)	intron (NM_001165966, intron 1 of 18)	7880	NM_031220	83394		NM_031220	ENSG00000091622	PITPNM3	ACKR6|CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
193600	chr6	30724971	30725430	+	0	NA	non-coding (NR_120608, exon 4 of 4)	non-coding (NR_120608, exon 4 of 4)	3562	NM_001293215	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
219168	chr8	66512451	66512950	+	0	NA	intron (NM_152765, intron 4 of 5)	intron (NM_152765, intron 4 of 5)	19134	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
63336	chr13	114018451	114018830	+	0	NA	intron (NM_001320822, intron 10 of 23).2	intron (NM_001320822, intron 10 of 23).2	-44564	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
62856	chr13	110421751	110422050	+	0	NA	intron (NM_001846, intron 4 of 47)	intron (NM_001846, intron 4 of 47)	41387	NM_001267044	100129836		NM_001267044	ENSG00000224821	COL4A2-AS2	-	COL4A2 antisense RNA 2	ncRNA
30573	chr10	79981671	79981830	+	0	NA	Intergenic	CpG	-32645	NM_003019	6441		NM_003019	ENSG00000133661	SFTPD	COLEC7|PSP-D|SFTP4|SP-D	surfactant protein D	protein-coding
55286	chr12	103279521	103279780	+	0	NA	intron (NR_103526, intron 4 of 10)	intron (NR_103526, intron 4 of 10)	127808	NR_126333	101929058		NR_126333	ENSG00000257860	C12orf42-AS1	-	C12orf42 antisense RNA 1	ncRNA
130115	chr2	74550851	74551150	+	0	NA	intron (NM_001289164, intron 2 of 11)	AluSx|SINE|Alu	-1474	NM_001289165	84695		NM_032603	ENSG00000115318	LOXL3	LOXL|MYP28	lysyl oxidase like 3	protein-coding
8195	chr1	39573951	39574050	+	0	NA	TTS (NR_125979)	TTS (NR_125979)	2790	NM_001135654	8761		NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
87045	chr16	68289171	68290500	+	0	NA	intron (NM_001076785, intron 5 of 11)	intron (NM_001076785, intron 5 of 11)	21111	NM_032178	84138		NM_032178	ENSG00000103061	SLC7A6OS	EPM12|Iwr1	solute carrier family 7 member 6 opposite strand	protein-coding
86102	chr16	57651601	57652480	+	0	NA	intron (NM_001370440, intron 4 of 14)	MIR|SINE|MIR	12548	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
2650	chr1	10429171	10429330	+	0	NA	Intergenic	Intergenic	-1183	NM_198544	100526739		NM_198544	ENSG00000251503	CENPS-CORT	APITD1|APITD1-CORT|CENP-S|CENPS|FAAP16|MHF1	CENPS-CORT readthrough	protein-coding
44902	chr11	115148771	115149130	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-184627	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
161750	chr3	44584701	44585100	+	0	NA	promoter-TSS (NM_001351733)	promoter-TSS (NM_001351733)	-64	NM_001351733	110354863		NM_001351732		ZNF660-ZNF197	-	ZNF660-ZNF197 readthrough	protein-coding
22956	chr1	226004251	226004900	+	0	NA	Intergenic	Intergenic	-5232	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
62391	chr13	99271471	99272380	+	0	NA	intron (NR_026644, intron 4 of 8)	L1MEd|LINE|L1	-13497	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
44371	chr11	102474371	102474730	+	0	NA	intron (NR_135076, intron 1 of 2)	MER90|LTR|ERV1	7295	NR_135076	102723838		NR_135076	ENSG00000255482	LOC102723838	-	uncharacterized LOC102723838	ncRNA
82487	chr16	17351521	17351850	+	0	NA	intron (NM_022166, intron 2 of 11)	intron (NM_022166, intron 2 of 11)	119275	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
41346	chr11	65931001	65931530	+	0	NA	Intergenic	AluY|SINE|Alu	11839	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
149611	chr21	33374721	33375330	+	0	NA	Intergenic	Intergenic	-27871	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
237214	chrX	109475321	109475580	+	0	NA	exon (NM_001522, exon 2 of 20)	exon (NM_001522, exon 2 of 20)	6636	NM_001522	2986		NM_001522	ENSG00000101890	GUCY2F	CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2	guanylate cyclase 2F, retinal	protein-coding
191909	chr6	15427571	15427930	+	0	NA	intron (NM_001267040, intron 3 of 17)	intron (NM_001267040, intron 3 of 17)	178895	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
199041	chr6	111464901	111465300	+	0	NA	intron (NM_001286431, intron 3 of 34)	AluSq2|SINE|Alu	18118	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
48015	chr12	6934051	6934700	+	0	NA	intron (NM_001007026, intron 3 of 9)	intron (NM_001007026, intron 3 of 9)	6416	NM_001940	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
219196	chr8	66612551	66614200	+	0	NA	promoter-TSS (NM_001080416)	promoter-TSS (NM_001080416)	-157	NM_001080416	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
17139	chr1	156185051	156185550	+	0	NA	Intergenic	HERVK22-int|LTR|ERVK	-8804	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
107912	chr18	57561751	57562160	+	0	NA	intron (NM_001371095, intron 7 of 11)	intron (NM_001371095, intron 7 of 11)	24747	NM_001371095	2235		NM_000140	ENSG00000066926	FECH	EPP|EPP1|FCE	ferrochelatase	protein-coding
89991	chr16	89863401	89864700	+	0	NA	intron (NM_032451, intron 12 of 14)	MER3|DNA|hAT-Charlie	-9542	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
11745	chr1	92017721	92018650	+	0	NA	Intergenic	Intergenic	-11800	NM_173567	253152		NM_173567	ENSG00000172031	EPHX4	ABHD7|EH4|EPHXRP	epoxide hydrolase 4	protein-coding
119690	chr19	41095771	41096230	+	0	NA	3' UTR (NM_000766, exon 9 of 9)	3' UTR (NM_000766, exon 9 of 9)	7549	NM_000766	1553		NM_000766	ENSG00000197838	CYP2A13	CPAD|CYP2A|CYPIIA13	cytochrome P450 family 2 subfamily A member 13	protein-coding
159610	chr3	15259871	15260230	+	0	NA	non-coding (NR_046084, exon 2 of 3)	non-coding (NR_046084, exon 2 of 3)	5866	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
140822	chr2	236546481	236547550	+	0	NA	Intergenic	Intergenic	-22810	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
230781	chr9	128921401	128921600	+	0	NA	promoter-TSS (NM_001100877)	promoter-TSS (NM_001100877)	518	NM_001100876	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
64112	chr14	22822371	22823650	+	0	NA	Intergenic	CpG	-3219	NM_001126106	9056		NM_003982	ENSG00000155465	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	solute carrier family 7 member 7	protein-coding
110263	chr19	1803121	1803580	+	0	NA	intron (NR_047593, intron 10 of 28)	intron (NR_047593, intron 10 of 28)	8926	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
58053	chr12	124482101	124482930	+	0	NA	intron (NM_001077261, intron 5 of 47)	intron (NM_001077261, intron 5 of 47)	85097	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
165277	chr3	75618701	75618900	+	0	NA	Intergenic	CpG	-11963	NR_031714	100302212		NR_031714	ENSG00000283894	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
107283	chr18	44682651	44683250	+	0	NA	intron (NM_015559, intron 1 of 5)	intron (NM_015559, intron 1 of 5)	2062	NM_015559	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
4984	chr1	24211951	24212450	+	0	NA	TTS (NR_027087)	TTS (NR_027087)	11960	NR_027087	284632		NR_027087	ENSG00000230023	LINC02800	-	long intergenic non-protein coding RNA 2800	ncRNA
208535	chr7	70659221	70659680	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-472694	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
191659	chr6	13427451	13428720	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	-19948	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
202117	chr6	154772971	154773130	+	0	NA	intron (NM_001286189, intron 3 of 21)	AluSx1|SINE|Alu	39634	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
132119	chr2	101570301	101571200	+	0	NA	Intergenic	L1M4|LINE|L1	-95638	NM_001367509	731220		NM_207403	ENSG00000196460	RFX8	-	regulatory factor X8	protein-coding
40002	chr11	62642351	62642650	+	0	NA	intron (NM_198334, intron 1 of 23)	AluSx3|SINE|Alu	-2282	NM_001329222	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
126829	chr2	30711151	30712080	+	0	NA	Intergenic	MIRb|SINE|MIR	95831	NM_144575	92291		NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
92952	chr17	17019751	17019850	+	0	NA	Intergenic	Intergenic	-22657	NM_001364716	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
174032	chr4	26859101	26859330	+	0	NA	TTS (NR_134675)	TTS (NR_134675)	1029	NR_134675	105374546		NR_134673		STIM2-AS1	-	STIM2 antisense RNA 1	ncRNA
43117	chr11	75214321	75214680	+	0	NA	Intergenic	Intergenic	-26274	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
33189	chr10	113233171	113233330	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	103979	NM_001349870	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
147599	chr20	62032401	62032800	+	0	NA	intron (NM_003185, intron 1 of 14)	intron (NM_003185, intron 1 of 14)	-32202	NR_130463	100422838		NR_130463	ENSG00000265306	MIR3195	-	microRNA 3195	ncRNA
163631	chr3	52057101	52058230	+	0	NA	Intergenic	Intergenic	-1094	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
162062	chr3	46849821	46850280	+	0	NA	Intergenic	Intergenic	13394	NM_000258	4634		NM_000258	ENSG00000160808	MYL3	CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl	myosin light chain 3	protein-coding
57884	chr12	123429671	123430580	+	0	NA	intron (NR_130703, intron 1 of 2)	AluJo|SINE|Alu	6608	NR_130703	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
46973	chr11	134868501	134868730	+	0	NA	Intergenic	Intergenic	-116737	NR_135050	100507548		NR_135050		LOC100507548	-	uncharacterized LOC100507548	ncRNA
99735	chr17	50918051	50918350	+	0	NA	Intergenic	Intergenic	-50222	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
238834	chrX	154459031	154460800	+	0	NA	intron (NM_017514, intron 1 of 32)	intron (NM_017514, intron 1 of 32)	1634	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
178476	chr4	148435771	148436130	+	0	NA	exon (NM_001354819, exon 2 of 8)	exon (NM_001354819, exon 2 of 8)	6464	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
100611	chr17	63524271	63524430	+	0	NA	exon (NM_001278919, exon 2 of 13)	exon (NM_001278919, exon 2 of 13)	992	NM_030779	81033		NM_030779	ENSG00000173826	KCNH6	ERG-2|ERG2|HERG2|Kv11.2|hERG-2	potassium voltage-gated channel subfamily H member 6	protein-coding
119946	chr19	41871101	41872280	+	0	NA	3' UTR (NM_001321485, exon 6 of 6)	3' UTR (NM_001321485, exon 6 of 6)	2063	NR_106855	102465478		NR_106855	ENSG00000276926	MIR6797	hsa-mir-6797	microRNA 6797	ncRNA
145360	chr20	41151851	41152180	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-14015	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
101833	chr17	73667101	73667500	+	0	NA	Intergenic	Intergenic	-22855	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
63907	chr14	21915871	21916030	+	0	NA	Intergenic	Intergenic	-244933	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
155361	chr22	38285951	38286530	+	0	NA	Intergenic	AluSq2|SINE|Alu	-13230	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
217503	chr8	29065471	29065980	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	174411	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
109822	chr19	1171171	1171930	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	2718	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
198757	chr6	108589371	108589780	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	28658	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
89782	chr16	89478321	89479330	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	11736	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
31324	chr10	92843951	92844050	+	0	NA	intron (NM_001013848, intron 2 of 22)	AluSg7|SINE|Alu	-4455	NM_001319200	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
16869	chr1	155754421	155754880	+	0	NA	intron (NM_001282860, intron 27 of 31)	AluSg|SINE|Alu	8882	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
67929	chr14	74688121	74688380	+	0	NA	intron (NM_001039479, intron 2 of 19)	AluY|SINE|Alu	24830	NM_001039479	9870		NM_014821	ENSG00000119682	AREL1	FIEL1|KIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding
156514	chr22	41377621	41378280	+	0	NA	intron (NM_001145398, intron 1 of 3)	intron (NM_001145398, intron 1 of 3)	-3992	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
116594	chr19	18261301	18263230	+	0	NA	intron (NM_001145305, intron 3 of 3)	intron (NM_001145305, intron 3 of 3)	-6846	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
9076	chr1	44840101	44840300	+	0	NA	intron (NM_001166292, intron 2 of 22)	AluSx1|SINE|Alu	2744	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
137017	chr2	190676071	190676430	+	0	NA	intron (NM_001321315, intron 3 of 5)	L2c|LINE|L2	17092	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
185204	chr5	119417901	119418100	+	0	NA	Intergenic	Intergenic	-34497	NM_001199291	3295		NM_000414	ENSG00000133835	HSD17B4	DBP|MFE-2|MFP-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid 17-beta dehydrogenase 4	protein-coding
207019	chr7	38371971	38372730	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	30773	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
5822	chr1	26690151	26690680	+	0	NA	Intergenic	Intergenic	3716	NR_135804	101928728		NR_135804	ENSG00000260063	LOC101928728	-	uncharacterized LOC101928728	ncRNA
204066	chr7	2019601	2020380	+	0	NA	intron (NM_001304524, intron 10 of 16)	MIRc|SINE|MIR	69062	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
83448	chr16	27320621	27320880	+	0	NA	intron (NM_001257997, intron 1 of 9)	intron (NM_001257997, intron 1 of 9)	6776	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
49497	chr12	25295401	25295600	+	0	NA	Intergenic	Intergenic	-44571	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
50628	chr12	48705301	48705700	+	0	NA	intron (NM_001240, intron 3 of 8)	FLAM_C|SINE|Alu	11207	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
168662	chr3	150538971	150539330	+	0	NA	Intergenic	Intergenic	7346	NM_014445	27230		NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding
411	chr1	1072951	1073050	+	0	NA	intron (NM_001205252, intron 1 of 1)	intron (NM_001205252, intron 1 of 1)	1306	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
7500	chr1	33307201	33307730	+	0	NA	intron (NM_001080438, intron 4 of 4)	intron (NM_001080438, intron 4 of 4)	13633	NM_001080438	127550		NM_001080438	ENSG00000184389	A3GALT2	A3GALT2P|IGB3S|IGBS3S	alpha 1,3-galactosyltransferase 2	protein-coding
4991	chr1	24321321	24323430	+	0	NA	promoter-TSS (NM_021180)	promoter-TSS (NM_021180)	-665	NM_021180	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
8454	chr1	40697051	40697380	+	0	NA	intron (NM_001142590, intron 2 of 14)	MIRb|SINE|MIR	-4954	NR_024567	100130557		NR_024567		NFYC-AS1	0808y08y	NFYC antisense RNA 1	ncRNA
185589	chr5	131397551	131398350	+	0	NA	Intergenic	AluSg|SINE|Alu	133897	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
22620	chr1	223515371	223516350	+	0	NA	Intergenic	MIRb|SINE|MIR	122445	NM_152610	164127		NM_152610	ENSG00000178395	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
53906	chr12	71636471	71636950	+	0	NA	intron (NM_144982, intron 8 of 34)	intron (NM_144982, intron 8 of 34)	27138	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
120012	chr19	41936251	41937150	+	0	NA	Intergenic	Intergenic	7880	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
77874	chr15	88910901	88911330	+	0	NA	intron (NM_001114614, intron 1 of 6)	intron (NM_001114614, intron 1 of 6)	2053	NM_001310321	4240		NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule EGF and factor V/VIII domain containing	protein-coding
218496	chr8	52496101	52496330	+	0	NA	Intergenic	Intergenic	69215	NM_207413	389658		NM_207413	ENSG00000196711	ALKAL1	AUGA|AUGB|FAM150A|UNQ9433	ALK and LTK ligand 1	protein-coding
43777	chr11	86254351	86254680	+	0	NA	intron (NM_001330334, intron 3 of 9)	AluSc8|SINE|Alu	9762	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
6910	chr1	31622801	31623000	+	0	NA	intron (NM_001525, intron 6 of 8)	intron (NM_001525, intron 6 of 8)	5211	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
16209	chr1	153880601	153881200	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	42072	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
203471	chr7	510651	510950	+	0	NA	intron (NM_033023, intron 4 of 5)	(GGGAG)n|Simple_repeat|Simple_repeat	9044	NM_002607	5154		NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
112183	chr19	5665851	5666430	+	0	NA	intron (NM_001320571, intron 15 of 18)	intron (NM_001320571, intron 15 of 18)	14098	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
136411	chr2	176159501	176159700	+	0	NA	intron (NM_006898, intron 1 of 3)	intron (NM_006898, intron 1 of 3)	2293	NM_006898	3232		NM_006898	ENSG00000128652	HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding
217217	chr8	26442301	26442500	+	0	NA	Intergenic	Intergenic	51987	NM_001330491	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
92537	chr17	8942201	8943850	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	22682	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
110700	chr19	2294071	2295650	+	0	NA	intron (NM_001101391, intron 1 of 1)	intron (NM_001101391, intron 1 of 1)	-12685	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
66703	chr14	64235321	64236230	+	0	NA	intron (NM_001271877, intron 4 of 5)	intron (NM_001271877, intron 4 of 5)	19821	NM_182910	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
185660	chr5	131589551	131590180	+	0	NA	intron (NM_016340, intron 4 of 27)	LTR41B|LTR|ERVL	45364	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
234438	chrX	16867651	16867950	+	0	NA	intron (NM_002893, intron 2 of 11)	AluSx|SINE|Alu	2063	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
42981	chr11	73789921	73790580	+	0	NA	intron (NR_134660, intron 2 of 7)	AluY|SINE|Alu	2376	NR_134661	51642		NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48|mL48	mitochondrial ribosomal protein L48	protein-coding
166740	chr3	121833951	121835750	+	0	NA	promoter-TSS (NM_018456)	promoter-TSS (NM_018456)	210	NM_001023570	9657		NM_014642	ENSG00000173226	IQCB1	NPHP5|PIQ|SLSN5	IQ motif containing B1	protein-coding
169543	chr3	170171771	170172330	+	0	NA	intron (NM_001308116, intron 3 of 14)	intron (NM_001308116, intron 3 of 14)	9683	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
171362	chr3	196070171	196070750	+	0	NA	intron (NM_001313966, intron 4 of 16)	AluSq2|SINE|Alu	11630	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
117014	chr19	18911971	18912230	+	0	NA	intron (NM_007263, intron 2 of 9)	AluSp|SINE|Alu	7287	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
15098	chr1	148532321	148532830	+	0	NA	3' UTR (NM_015383, exon 66 of 66)	3' UTR (NM_015383, exon 66 of 66)	-49273	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
157094	chr22	42627471	42627630	+	0	NA	intron (NM_001129819, intron 6 of 8)	intron (NM_001129819, intron 6 of 8)	12305	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
3014	chr1	12079401	12079950	+	0	NA	intron (NM_001281430, intron 1 of 13)	intron (NM_001281430, intron 1 of 13)	16298	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
78256	chr15	90818171	90819230	+	0	NA	Intergenic	Intergenic	-49888	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
136597	chr2	178448901	178449330	+	0	NA	intron (NM_001139518, intron 2 of 7)	L2|LINE|L2	1513	NM_001139518	8575		NM_003690	ENSG00000180228	PRKRA	DYT16|HSD14|PACT|RAX	protein activator of interferon induced protein kinase EIF2AK2	protein-coding
220919	chr8	107240921	107241180	+	0	NA	Intergenic	L1PA3|LINE|L1	95465	NM_001314051	284		NM_001146	ENSG00000154188	ANGPT1	AGP1|AGPT|AGPT-1|ANG1|HAE5	angiopoietin 1	protein-coding
206599	chr7	35802721	35803430	+	0	NA	intron (NM_001788, intron 1 of 12)	intron (NM_001788, intron 1 of 12)	1856	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
150888	chr21	44137921	44138900	+	0	NA	intron (NM_198155, intron 4 of 5).2	intron (NM_198155, intron 4 of 5).2	4727	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
2432	chr1	9604551	9604650	+	0	NA	3' UTR (NM_001010866, exon 6 of 6)	3' UTR (NM_001010866, exon 6 of 6)	15689	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
167150	chr3	128054451	128054800	+	0	NA	intron (NM_013336, intron 2 of 11)	intron (NM_013336, intron 2 of 11)	2188	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
98159	chr17	46045651	46045950	+	0	NA	intron (NM_015443, intron 7 of 14).2	intron (NM_015443, intron 7 of 14).2	46550	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
134109	chr2	134060821	134061480	+	0	NA	Intergenic	L1PA4|LINE|L1	-58785	NM_001371457	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
161578	chr3	42926321	42926580	+	0	NA	Intergenic	Intergenic	-9936	NM_001205272	100506243		NM_015673	ENSG00000240747	KRBOX1	-	KRAB box domain containing 1	protein-coding
204107	chr7	2213901	2214100	+	0	NA	intron (NM_001304524, intron 7 of 16)	intron (NM_001304524, intron 7 of 16)	18945	NM_003550	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
82764	chr16	21427151	21427900	+	0	NA	Intergenic	MER101-int|LTR|ERV1	-2147	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
173815	chr4	18006551	18006650	+	0	NA	intron (NR_158566, intron 1 of 5)	THE1B|LTR|ERVL-MaLR	15155	NR_136669	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
229592	chr9	123376571	123376830	+	0	NA	intron (NM_173689, intron 12 of 12)	L3|LINE|CR1	7921	NR_104603	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
104735	chr17	81662621	81664200	+	0	NA	promoter-TSS (NR_158591)	promoter-TSS (NR_158591)	-283	NR_158591	5148		NM_002602	ENSG00000185527	PDE6G	PDEG|RP57	phosphodiesterase 6G	protein-coding
2765	chr1	10696401	10696780	+	0	NA	intron (NM_017766, intron 3 of 15)	intron (NM_017766, intron 3 of 15)	100056	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
230063	chr9	127426671	127427500	+	0	NA	intron (NM_001286696, intron 1 of 4)	L1MB7|LINE|L1	2703	NM_007135	7633		NM_007135	ENSG00000196152	ZNF79	pT7	zinc finger protein 79	protein-coding
179176	chr4	173165701	173166250	+	0	NA	intron (NR_134242, intron 4 of 6)	intron (NR_134242, intron 4 of 6)	-2836	NM_001375599	51809		NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
21137	chr1	203662001	203662200	+	0	NA	intron (NM_001365784, intron 1 of 20)	AluY|SINE|Alu	34163	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
218837	chr8	59381001	59381400	+	0	NA	Intergenic	L1P2|LINE|L1	261990	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
70613	chr14	102799171	102799530	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	21871	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
146019	chr20	46747971	46748230	+	0	NA	Intergenic	Intergenic	38451	NM_030777	81031		NM_030777	ENSG00000197496	SLC2A10	ATORS|ATS|GLUT10	solute carrier family 2 member 10	protein-coding
201336	chr6	144494701	144494950	+	0	NA	intron (NM_007124, intron 32 of 73)	LTR12C|LTR|ERV1	-88323	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
232365	chr9	135776851	135777550	+	0	NA	intron (NM_020822, intron 20 of 30)	intron (NM_020822, intron 20 of 30)	75015	NM_020822	57582		NM_020822	ENSG00000107147	KCNT1	DEE14|EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
189311	chr5	172142471	172143530	+	0	NA	intron (NM_005990, intron 2 of 18)	intron (NM_005990, intron 2 of 18)	45224	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
64772	chr14	34631651	34631950	+	0	NA	Intergenic	Intergenic	-1652	NM_001366519	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
42792	chr11	72784571	72784930	+	0	NA	intron (NM_006645, intron 1 of 6)	intron (NM_006645, intron 1 of 6)	1220	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
143077	chr20	21548101	21548930	+	0	NA	Intergenic	Intergenic	-21509	NR_109880	101929625		NR_109880		LINC01727	IRENA	long intergenic non-protein coding RNA 1727	ncRNA
103255	chr17	77594821	77595080	+	0	NA	Intergenic	MIR3|SINE|MIR	48009	NR_040050	100507351		NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
196649	chr6	44297101	44298330	+	0	NA	promoter-TSS (NM_182539)	promoter-TSS (NM_182539)	-17	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
185948	chr5	132962801	132964650	+	0	NA	promoter-TSS (NM_014423)	promoter-TSS (NM_014423)	-91	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
107816	chr18	51437771	51437930	+	0	NA	intron (NR_040074, intron 1 of 2)	intron (NR_040074, intron 1 of 2)	45808	NR_040075	100287225		NR_040074	ENSG00000227115	LINC01630	-	long intergenic non-protein coding RNA 1630	ncRNA
115697	chr19	16203101	16203300	+	0	NA	intron (NM_001130524, intron 1 of 12)	intron (NM_001130524, intron 1 of 12)	5289	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
18584	chr1	165369151	165369550	+	0	NA	Intergenic	Intergenic	-12635	NM_177398	4009		NM_177398	ENSG00000162761	LMX1A	DFNA7|LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding
155617	chr22	38863501	38864100	+	0	NA	3' UTR (NM_001303494, exon 5 of 5)	3' UTR (NM_001303494, exon 5 of 5)	8416	NM_001303494	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
65287	chr14	50043521	50044570	+	0	NA	intron (NR_131171, intron 4 of 8)	intron (NR_131171, intron 4 of 8)	-36525	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
227350	chr9	89471531	89472780	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	7735	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
222915	chr8	142856901	142857100	+	0	NA	Intergenic	(GGGGGA)n|Simple_repeat|Simple_repeat	22199	NM_002066	2765		NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
140926	chr2	237721751	237722250	+	0	NA	intron (NM_001137552, intron 4 of 10)	intron (NM_001137552, intron 4 of 10)	29795	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
75083	chr15	64388651	64388750	+	0	NA	intron (NM_001321924, intron 1 of 12)	MIR1_Amn|SINE|MIR	864	NM_016213	9325		NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5	thyroid hormone receptor interactor 4	protein-coding
234867	chrX	25067521	25068350	+	0	NA	Intergenic	Intergenic	-51970	NM_139058	170302		NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
104869	chr17	81857021	81857530	+	0	NA	intron (NM_000918, intron 2 of 10)	AluSx|SINE|Alu	3260	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
91878	chr17	7255371	7255950	+	0	NA	intron (NR_145515, intron 4 of 6)	intron (NR_145515, intron 4 of 6)	3234	NR_145515	23587		NM_015362	ENSG00000170291	ELP5	C17orf81|DERP6|HSPC002|MST071|MSTP071	elongator acetyltransferase complex subunit 5	protein-coding
52857	chr12	57111001	57111700	+	0	NA	promoter-TSS (NM_001178081)	promoter-TSS (NM_001178081)	12	NM_001178078	6778		NM_003153	ENSG00000166888	STAT6	D12S1644|HIES6|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6	protein-coding
53337	chr12	64634751	64635150	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJb|SINE|Alu	-12345	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
107531	chr18	48446471	48447000	+	0	NA	Intergenic	Intergenic	-34150	NM_001371287	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
217030	chr8	23242321	23242630	+	0	NA	Intergenic	PABL_A-int|LTR|ERV1	-1162	NM_152272	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
169270	chr3	157607871	157608100	+	0	NA	Intergenic	Intergenic	64673	NR_166164	152078		NM_001099777	ENSG00000293490	SLC66A1LP	C3orf55|PQLC2L|SLC66A1L|SLC66A2L	solute carrier family 66 member 1 like, pseudogene	pseudo
211801	chr7	107875651	107875950	+	0	NA	Intergenic	AluSx|SINE|Alu	-15307	NM_001289751	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
221854	chr8	128277351	128277850	+	0	NA	Intergenic	L1PB1|LINE|L1	127484	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
75276	chr15	65052071	65052630	+	0	NA	TTS (NM_001379429)	TTS (NM_001379429)	6963	NM_178859	123264		NM_178859	ENSG00000186198	SLC51B	OSTB|OSTBETA|PBAM2|SLC51A1BP	SLC51 subunit beta	protein-coding
177256	chr4	109302051	109303230	+	0	NA	promoter-TSS (NM_032518)	promoter-TSS (NM_032518)	18	NM_032518	84570		NM_032518	ENSG00000188517	COL25A1	AMY|CFEOM5|CLAC|CLAC-P|CLACP	collagen type XXV alpha 1 chain	protein-coding
190132	chr5	178061921	178062380	+	0	NA	intron (NR_149722, intron 15 of 15)	intron (NR_149722, intron 15 of 15)	-51382	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
74249	chr15	56930671	56931030	+	0	NA	intron (NM_207038, intron 3 of 19)	MER46C|DNA|TcMar-Tigger	11405	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
69183	chr14	92654221	92654900	+	0	NA	intron (NM_024832, intron 6 of 9)	intron (NM_024832, intron 6 of 9)	78326	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
193264	chr6	29957501	29957900	+	0	NA	Intergenic	Intergenic	15168	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
106188	chr18	10577851	10578200	+	0	NA	Intergenic	L1PA2|LINE|L1	48395	NR_146509	102724470		NR_146509		LINC01887	-	long intergenic non-protein coding RNA 1887	ncRNA
9635	chr1	52549321	52549930	+	0	NA	intron (NM_015269, intron 1 of 29)	intron (NM_015269, intron 1 of 29)	3465	NM_015269	23318		NM_015269	ENSG00000134744	TUT4	PAPD3|TENT3A|ZCCHC11	terminal uridylyl transferase 4	protein-coding
146313	chr20	49195321	49195780	+	0	NA	intron (NM_001319135, intron 1 of 14)	AluY|SINE|Alu	-7180	NM_001037328	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
230369	chr9	128073671	128074680	+	0	NA	intron (NM_001006641, intron 1 of 9)	AluSx|SINE|Alu	5975	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
100367	chr17	60078071	60079450	+	0	NA	promoter-TSS (NR_135648)	promoter-TSS (NR_135648)	161	NM_022070	63897		NM_022070	ENSG00000068097	HEATR6	ABC1	HEAT repeat containing 6	protein-coding
117387	chr19	19596671	19596900	+	0	NA	intron (NM_025245, intron 2 of 7)	AluJb|SINE|Alu	21902	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
46600	chr11	128544621	128545080	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	18708	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
226026	chr9	42430901	42431300	+	0	NA	Intergenic	Intergenic	138249	NR_126050	103908605		NR_126050		FAM88E	-	family with sequence similarity 88 member E	ncRNA
6678	chr1	29138451	29138950	+	0	NA	Intergenic	AluY|SINE|Alu	-14797	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
94146	chr17	28339821	28340680	+	0	NA	intron (NM_021137, intron 2 of 6)	intron (NM_021137, intron 2 of 6)	4489	NM_021137	7126		NM_021137	ENSG00000109079	TNFAIP1	B12|B61|BTBD34|EDP1|hBACURD2	TNF alpha induced protein 1	protein-coding
95179	chr17	35175951	35176330	+	0	NA	intron (NM_173167, intron 14 of 18)	intron (NM_173167, intron 14 of 18)	18253	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
91171	chr17	3798051	3798650	+	0	NA	intron (NM_002208, intron 1 of 30)	intron (NM_002208, intron 1 of 30)	2838	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
182406	chr5	61338351	61338650	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	6242	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
108236	chr18	63207001	63207750	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	112394	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
86598	chr16	67281501	67281780	+	0	NA	exon (NM_001129729, exon 6 of 22)	exon (NM_001129729, exon 6 of 22)	2108	NM_001129729	25894		NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
87454	chr16	71358221	71359000	+	0	NA	promoter-TSS (NR_027910).2	promoter-TSS (NR_027910).2	-103	NM_007088	794		NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
69728	chr14	98229451	98230350	+	0	NA	Intergenic	Intergenic	-251776	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
23267	chr1	227892501	227892700	+	0	NA	Intergenic	Intergenic	49083	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
109926	chr19	1306251	1306550	+	0	NA	Intergenic	AluY|SINE|Alu	20527	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
152927	chr22	22791771	22792680	+	0	NA	Intergenic	Intergenic	-30551	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
211665	chr7	106275571	106276900	+	0	NA	intron (NM_005746, intron 2 of 10)	intron (NM_005746, intron 2 of 10)	8748	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
218468	chr8	48950701	48951050	+	0	NA	Intergenic	Intergenic	-29446	NM_003068	6591		NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding
41004	chr11	65415651	65416790	+	0	NA	Intergenic	Intergenic	-6578	NR_028272	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
97285	chr17	43124981	43126200	+	0	NA	promoter-TSS (NR_027676)	promoter-TSS (NR_027676)	33	NR_138145	10230		NM_005821	ENSG00000198496	NBR2	NCRNA00192	neighbor of BRCA1 lncRNA 2	ncRNA
11827	chr1	92858771	92860280	+	0	NA	intron (NM_001252269, intron 1 of 3)	LTR82A|LTR|ERVL	17625	NM_001252271	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
225625	chr9	36257521	36259150	+	0	NA	5' UTR (NM_001190384, exon 1 of 10)	5' UTR (NM_001190384, exon 1 of 10)	113	NM_001190384	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
84713	chr16	30883001	30883480	+	0	NA	intron (NR_110942, intron 2 of 2)	intron (NR_110942, intron 2 of 2)	7780	NR_110942	101928736		NR_110940	ENSG00000260083	MIR762HG	-	MIR762 host gene	ncRNA
142508	chr20	4811201	4812930	+	0	NA	intron (NM_014737, intron 2 of 11)	intron (NM_014737, intron 2 of 11)	3058	NM_170774	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
38736	chr11	46915171	46915530	+	0	NA	intron (NM_002334, intron 1 of 37)	intron (NM_002334, intron 1 of 37)	3200	NM_002334	4038		NM_002334	ENSG00000134569	LRP4	CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2	LDL receptor related protein 4	protein-coding
24142	chr1	235845751	235846200	+	0	NA	intron (NM_001301365, intron 1 of 52)	L1PB1|LINE|L1	7085	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
119842	chr19	41380401	41380600	+	0	NA	intron (NM_001369864, intron 3 of 4)	AluSx1|SINE|Alu	3236	NM_001042595	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
30322	chr10	75431371	75431730	+	0	NA	promoter-TSS (NM_001305581)	promoter-TSS (NM_001305581)	-74	NM_001305581	83938		NM_032024	ENSG00000148655	LRMDA	C10orf11|CDA017	leucine rich melanocyte differentiation associated	protein-coding
178551	chr4	151104721	151105030	+	0	NA	TTS (NM_001006)	TTS (NM_001006)	1048	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
58761	chr12	132683951	132684450	+	0	NA	intron (NM_006231, intron 1 of 48)	intron (NM_006231, intron 1 of 48)	3142	NM_006231	5426		NM_006231	ENSG00000177084	POLE	CRCS12|FILS|IMAGEI|POLE1	DNA polymerase epsilon, catalytic subunit	protein-coding
149367	chr21	29348271	29348780	+	0	NA	intron (NR_027655, intron 4 of 7)	intron (NR_027655, intron 4 of 7)	-23976	NR_046564	100874322		NR_046564		BACH1-IT2	-	BACH1 intronic transcript 2	ncRNA
155789	chr22	39296071	39296430	+	0	NA	Intergenic	AluY|SINE|Alu	17661	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
198328	chr6	101830571	101830730	+	0	NA	intron (NM_021956, intron 10 of 16)	L1PA17|LINE|L1	431665	NM_001166247	2898		NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6|NEDLAS	glutamate ionotropic receptor kainate type subunit 2	protein-coding
90221	chr17	504621	504880	+	0	NA	Intergenic	Intergenic	-58810	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
22571	chr1	222670151	222670630	+	0	NA	intron (NM_022831, intron 8 of 9)	intron (NM_022831, intron 8 of 9)	26087	NM_001300867	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
87232	chr16	69612701	69613030	+	0	NA	intron (NM_138713, intron 2 of 14)	AluJo|SINE|Alu	46899	NM_173215	10725		NM_006599	ENSG00000102908	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T cells 5	protein-coding
223219	chr8	143595671	143596800	+	0	NA	intron (NM_001130055, intron 1 of 8)	intron (NM_001130055, intron 1 of 8)	1178	NM_001130057	1936		NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
2409	chr1	9572601	9573180	+	0	NA	intron (NM_032315, intron 4 of 6)	FLAM_C|SINE|Alu	-16021	NM_001010866	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
15328	chr1	149897451	149898280	+	0	NA	Intergenic	AluSp|SINE|Alu	-1703	NM_016074	51027		NM_016074	ENSG00000178096	BOLA1	CGI-143	bolA family member 1	protein-coding
67423	chr14	70514471	70514630	+	0	NA	Intergenic	Intergenic	20454	NM_003814	8748		NM_003814	ENSG00000134007	ADAM20	-	ADAM metallopeptidase domain 20	protein-coding
196676	chr6	44593501	44593780	+	0	NA	Intergenic	MIR|SINE|MIR	-41759	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
66226	chr14	61328001	61329800	+	0	NA	intron (NM_006255, intron 1 of 13)	AluJb|SINE|Alu	7457	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
226277	chr9	68311271	68311650	+	0	NA	Intergenic	Intergenic	8593	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
138948	chr2	218252321	218252580	+	0	NA	intron (NM_152862, intron 10 of 10)	intron (NM_152862, intron 10 of 10)	-7046	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
13884	chr1	119142171	119142330	+	0	NA	intron (NR_125975, intron 2 of 6)	intron (NR_125975, intron 2 of 6)	-1578	NM_201263	10352		NM_015836	ENSG00000116874	WARS2	NEMMLAS|PKDYS3|TrpRS|mtTrpRS	tryptophanyl tRNA synthetase 2, mitochondrial	protein-coding
111231	chr19	3511271	3512130	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	5389	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
209974	chr7	92809721	92811600	+	0	NA	intron (NM_001145306, intron 2 of 7)	intron (NM_001145306, intron 2 of 7)	23299	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
127423	chr2	42130751	42131250	+	0	NA	Intergenic	AluSp|SINE|Alu	-38353	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
179149	chr4	169627001	169627300	+	0	NA	intron (NM_173872, intron 1 of 13)	L2c|LINE|L2	6572	NM_001243372	1182		NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3|NEDHYBA|NEDSBA	chloride voltage-gated channel 3	protein-coding
100605	chr17	63452221	63452680	+	0	NA	Intergenic	Intergenic	-6144	NM_001915	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
47089	chr12	632301	633450	+	0	NA	intron (NR_122124, intron 3 of 4)	intron (NR_122124, intron 3 of 4)	1984	NR_122124	100049716		NR_122124	ENSG00000177406	NINJ2-AS1	-	NINJ2 antisense RNA 1	ncRNA
159860	chr3	16601221	16601580	+	0	NA	intron (NM_001351, intron 1 of 10)	intron (NM_001351, intron 1 of 10)	3390	NM_001190811	1618		NM_001351	ENSG00000092345	DAZL	DAZH|DAZL1|DAZLA|SPGYLA	deleted in azoospermia like	protein-coding
67375	chr14	69767601	69768300	+	0	NA	promoter-TSS (NR_029378)	promoter-TSS (NR_029378)	-237	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
37017	chr11	12085751	12085850	+	0	NA	Intergenic	L2c|LINE|L2	-24776	NM_001282668	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
139272	chr2	219482351	219482650	+	0	NA	intron (NM_005876, intron 28 of 40)	intron (NM_005876, intron 28 of 40)	-13855	NM_001286811	100996693		NM_001286811	ENSG00000286095	SPEGNB	-	SPEG neighbor	protein-coding
149861	chr21	35234801	35235030	+	0	NA	Intergenic	Intergenic	-185613	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
36164	chr11	3155351	3155850	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	9710	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
179092	chr4	168477401	168477800	+	0	NA	intron (NM_001378070, intron 1 of 5)	MER104|DNA|TcMar-Tc2	2892	NM_001345927	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
100955	chr17	64499851	64501700	+	0	NA	promoter-TSS (NR_039891)	promoter-TSS (NR_039891)	64	NR_039891	100616387		NR_039891	ENSG00000284564	MIR3064	-	microRNA 3064	ncRNA
147708	chr20	62356621	62356880	+	0	NA	TTS (NR_109922)	TTS (NR_109922)	3740	NR_109922	101928158		NR_109922	ENSG00000228812	LAMA5-AS1	-	LAMA5 antisense RNA 1	ncRNA
46479	chr11	128311951	128312400	+	0	NA	Intergenic	Intergenic	103409	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
1260	chr1	2303651	2303950	+	0	NA	intron (NM_003036, intron 3 of 6)	intron (NM_003036, intron 3 of 6)	48861	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
95668	chr17	38296171	38297750	+	0	NA	promoter-TSS (NM_001278279)	promoter-TSS (NM_001278279)	-63	NM_001278279	84311		NM_032351	ENSG00000278845	MRPL45	L45mt|MRP-L45|Mba1|mL45	mitochondrial ribosomal protein L45	protein-coding
123083	chr19	51392501	51392700	+	0	NA	Intergenic	AluJb|SINE|Alu	-2009	NR_126530	147646		NM_001193623	ENSG00000262874	C19orf84	-	chromosome 19 open reading frame 84	protein-coding
2099	chr1	7982271	7983080	+	0	NA	intron (NM_007262, intron 6 of 6)	intron (NM_007262, intron 6 of 6)	20964	NM_007262	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
95377	chr17	35881971	35882330	+	0	NA	Intergenic	AluYh3|SINE|Alu	-1790	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
128732	chr2	61883571	61883730	+	0	NA	intron (NM_006430, intron 2 of 13)	intron (NM_006430, intron 2 of 13)	-4741	NM_001371765	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
102731	chr17	76225751	76226230	+	0	NA	intron (NM_052916, intron 1 of 18)	intron (NM_052916, intron 1 of 18)	14503	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
20417	chr1	198200601	198200800	+	0	NA	intron (NM_133494, intron 1 of 9)	AluSx|SINE|Alu	43702	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
149605	chr21	33342751	33342850	+	0	NA	intron (NM_001384503, intron 3 of 10)	AluY|SINE|Alu	17830	NM_001384503	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
214136	chr7	144314221	144314750	+	0	NA	intron (NM_001005287, intron 1 of 1)	AluJr4|SINE|Alu	2066	NM_001005287	346528		NM_001005287	ENSG00000221970	OR2A1	-	olfactory receptor family 2 subfamily A member 1	protein-coding
29930	chr10	73366871	73367430	+	0	NA	Intergenic	LTR31|LTR|ERV1	-8286	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
148394	chr20	63931321	63931580	+	0	NA	intron (NM_025219, intron 4 of 4)	CpG	10094	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
234361	chrX	15736251	15736630	+	0	NA	intron (NR_160544, intron 4 of 11)	AluSp|SINE|Alu	-1830	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
114630	chr19	12988201	12988600	+	0	NA	Intergenic	Intergenic	-7075	NM_002501	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
4766	chr1	23530321	23532050	+	0	NA	promoter-TSS (NM_004091)	promoter-TSS (NM_004091)	48	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
53139	chr12	57848051	57849700	+	0	NA	Intergenic	MIRc|SINE|MIR	-2146	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
100861	chr17	64260901	64261100	+	0	NA	intron (NM_001288732, intron 1 of 11)	intron (NM_001288732, intron 1 of 11)	2260	NM_001288732	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
117881	chr19	32673451	32673550	+	0	NA	intron (NM_032139, intron 1 of 28)	intron (NM_032139, intron 1 of 28)	1680	NM_032139	84079		NM_032139	ENSG00000105186	ANKRD27	PP12899|VARP	ankyrin repeat domain 27	protein-coding
37834	chr11	33260001	33260200	+	0	NA	intron (NM_001278162, intron 1 of 15)	intron (NM_001278162, intron 1 of 15)	1769	NM_001278162	10114		NM_005734	ENSG00000110422	HIPK3	DYRK6|FIST3|PKY|YAK1	homeodomain interacting protein kinase 3	protein-coding
14300	chr1	143796321	143796580	+	0	NA	intron (NR_145442, intron 1 of 1)	intron (NR_145442, intron 1 of 1)	2850	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
194473	chr6	33209651	33209750	+	0	NA	exon (NM_002931, exon 3 of 7).4	exon (NM_002931, exon 3 of 7).4	1200	NM_002931	6015		NM_002931	ENSG00000204227	RING1	RING1A|RNF1	ring finger protein 1	protein-coding
126074	chr2	25793421	25794000	+	0	NA	intron (NM_001369347, intron 1 of 9)	intron (NM_001369347, intron 1 of 9)	981	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
208806	chr7	73624101	73624930	+	0	NA	promoter-TSS (NM_032954)	promoter-TSS (NM_032954)	7	NM_032953	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
73362	chr15	42401801	42402500	+	0	NA	promoter-TSS (NM_173088)	promoter-TSS (NM_173088)	-240	NM_173088	825		NM_000070	ENSG00000092529	CAPN3	CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94	calpain 3	protein-coding
163566	chr3	51929351	51929650	+	0	NA	Intergenic	Intergenic	12404	NM_004704	9136		NM_004704	ENSG00000114767	RRP9	RNU3IP2|U3-55K	ribosomal RNA processing 9, U3 small nucleolar RNA binding protein	protein-coding
195075	chr6	35526971	35527330	+	0	NA	Intergenic	Intergenic	-14254	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
193786	chr6	31397971	31398480	+	0	NA	non-coding (NR_148223, exon 1 of 2)	non-coding (NR_148223, exon 1 of 2)	283	NR_148223	101929072		NR_148222		MICA-AS1	-	MICA antisense RNA 1	ncRNA
211307	chr7	103343621	103345050	+	0	NA	intron (NM_001362668, intron 1 of 17)	intron (NM_001362668, intron 1 of 17)	432	NM_014377	27000		NM_014377	ENSG00000105821	DNAJC2	MPHOSPH11|MPP11|ZRF1|ZUO1	DnaJ heat shock protein family (Hsp40) member C2	protein-coding
149955	chr21	36379421	36380280	+	0	NA	Intergenic	Intergenic	-5542	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
892	chr1	1658351	1659730	+	0	NA	promoter-TSS (NM_001787)	promoter-TSS (NM_001787)	-36	NM_001787	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
75756	chr15	68395551	68395650	+	0	NA	intron (NM_001004439, intron 2 of 29)	L1P2|LINE|L1	36563	NM_001004439	22801		NM_012211	ENSG00000137809	ITGA11	HsT18964	integrin subunit alpha 11	protein-coding
182094	chr5	56014001	56014200	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	18933	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
72698	chr15	38578571	38579150	+	0	NA	Intergenic	Intergenic	-14046	NM_005739	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
238198	chrX	137033601	137034150	+	0	NA	5' UTR (NM_054021, exon 1 of 2)	5' UTR (NM_054021, exon 1 of 2)	120	NM_054021	83550		NM_054021	ENSG00000165370	GPR101	GPCR6|PAGH2|PITA2	G protein-coupled receptor 101	protein-coding
156161	chr22	40208851	40208950	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	30975	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
214614	chr7	150717851	150718280	+	0	NA	intron (NM_001303630, intron 1 of 4)	intron (NM_001303630, intron 1 of 4)	1452	NM_130759	170575		NM_130759	ENSG00000213203	GIMAP1	HIMAP1|IAN2|IMAP1|IMAP38	GTPase, IMAP family member 1	protein-coding
83950	chr16	29143871	29144230	+	0	NA	Intergenic	Intergenic	69208	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
141097	chr2	238415121	238415530	+	0	NA	Intergenic	LTR105_Mam|LTR|ERVL	-11602	NM_001040445	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
164056	chr3	53843021	53843280	+	0	NA	intron (NM_018397, intron 1 of 8)	intron (NM_018397, intron 1 of 8)	3269	NM_018397	55349		NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
168916	chr3	152342021	152342700	+	0	NA	intron (NM_001376837, intron 2 of 9)	MIRb|SINE|MIR	-1370	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
55592	chr12	106683051	106683150	+	0	NA	intron (NR_038912, intron 2 of 3)	intron (NR_038912, intron 2 of 3)	1600	NR_038912	100505978		NR_038912	ENSG00000257711	LOC100505978	-	uncharacterized LOC100505978	ncRNA
78776	chr15	99286401	99286630	+	0	NA	intron (NM_144598, intron 3 of 9)	intron (NM_144598, intron 3 of 9)	28990	NR_073383	7190		NR_073383	ENSG00000259706	HSP90B2P	GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1	heat shock protein 90 beta family member 2, pseudogene	pseudo
64434	chr14	24197871	24198530	+	0	NA	Intergenic	AluY|SINE|Alu	-2464	NM_001289006	10548		NM_006405	ENSG00000100926	TM9SF1	HMP70|MP70	transmembrane 9 superfamily member 1	protein-coding
21339	chr1	204563221	204563880	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	47144	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
25331	chr10	6233151	6233780	+	0	NA	non-coding (NR_136554, exon 12 of 12)	non-coding (NR_136554, exon 12 of 12)	30533	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
153045	chr22	23274671	23274830	+	0	NA	intron (NM_021574, intron 8 of 21)	AluSg4|SINE|Alu	11983	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
123389	chr19	53919901	53920500	+	0	NA	intron (NM_001384801, intron 4 of 4)	intron (NM_001384801, intron 4 of 4)	10922	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
138589	chr2	208013971	208014130	+	0	NA	intron (NM_001080475, intron 1 of 7)	intron (NM_001080475, intron 1 of 7)	11477	NM_001080475	389072		NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
208587	chr7	72924301	72926050	+	0	NA	intron (NM_001257190, intron 4 of 15)	CpG	29588	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
202052	chr6	154157151	154158630	+	0	NA	3' UTR (NM_001130699, exon 13 of 13)	3' UTR (NM_001130699, exon 13 of 13)	68128	NM_001285527	4988		NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor mu 1	protein-coding
64252	chr14	23172321	23172980	+	0	NA	intron (NM_012244, intron 1 of 10)	MER20|DNA|hAT-Charlie	11010	NM_012244	23428		NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
228051	chr9	96024171	96024800	+	0	NA	intron (NM_001375291, intron 18 of 18)	L2|LINE|L2	-2674	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
224911	chr9	32554121	32554730	+	0	NA	intron (NM_182739, intron 2 of 2)	MIRb|SINE|MIR	-1797	NM_001195622	10210		NM_005802	ENSG00000197579	TOPORS	LUN|P53BP3|RP31|TP53BPL	TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase	protein-coding
218004	chr8	38410451	38411050	+	0	NA	TTS (NM_001174065)	TTS (NM_001174065)	23619	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
98357	chr17	46346021	46346280	+	0	NA	intron (NM_001039083, intron 3 of 3).5	HAL1|LINE|L1	15616	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
6089	chr1	27253671	27253830	+	0	NA	intron (NM_015023, intron 1 of 15)	intron (NM_015023, intron 1 of 15)	19118	NM_015023	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
97496	chr17	43901701	43901900	+	0	NA	promoter-TSS (NM_001278375)	promoter-TSS (NM_001278375)	-238	NM_001278375	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
163598	chr3	51981471	51981980	+	0	NA	TTS (NM_015407)	TTS (NM_015407)	-1810	NM_001198897	95		NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
15964	chr1	151875071	151875230	+	0	NA	intron (NM_053055, intron 5 of 5)	intron (NM_053055, intron 5 of 5)	-21438	NM_182578	284486		NM_182578	ENSG00000196407	THEM5	ACOT15	thioesterase superfamily member 5	protein-coding
189817	chr5	177003371	177003530	+	0	NA	intron (NM_001199297, intron 1 of 15)	AluSg|SINE|Alu	2992	NM_016290	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
96293	chr17	39944621	39945080	+	0	NA	TTS (NM_001195545)	TTS (NM_001195545)	3376	NM_001195545	100505591		NM_001195545	ENSG00000204913	LRRC3C	-	leucine rich repeat containing 3C	protein-coding
212260	chr7	122136901	122137100	+	0	NA	intron (NM_005763, intron 1 of 23)	intron (NM_005763, intron 1 of 23)	7249	NM_005763	10157		NM_005763	ENSG00000008311	AASS	LKR/SDH|LKRSDH|LORSDH	aminoadipate-semialdehyde synthase	protein-coding
131519	chr2	96555551	96556030	+	0	NA	Intergenic	AluSq2|SINE|Alu	17911	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
34781	chr11	212321	212850	+	0	NA	intron (NM_001286134, intron 6 of 9)	intron (NM_001286134, intron 6 of 9)	3249	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
201517	chr6	149085071	149085430	+	0	NA	Intergenic	Intergenic	-52589	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
238166	chrX	136858851	136859350	+	0	NA	Intergenic	AluSq2|SINE|Alu	20171	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
99574	chr17	50478001	50479200	+	0	NA	promoter-TSS (NM_018346)	promoter-TSS (NM_018346)	-200	NR_130911	55316		NM_018346	ENSG00000136444	RSAD1	HemW	radical S-adenosyl methionine domain containing 1	protein-coding
69830	chr14	99228571	99228750	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	43537	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
30092	chr10	73921601	73922500	+	0	NA	intron (NR_160937, intron 1 of 5)	intron (NR_160937, intron 1 of 5)	727	NR_160937	414236		NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 putative open reading frame 55	ncRNA
12683	chr1	109468621	109469250	+	0	NA	intron (NM_001040709, intron 2 of 5)	intron (NM_001040709, intron 2 of 5)	2389	NM_001040709	284612		NM_198280	ENSG00000143028	SYPL2	MG29	synaptophysin like 2	protein-coding
130101	chr2	74518071	74518430	+	0	NA	3' UTR (NM_133637, exon 12 of 12)	3' UTR (NM_133637, exon 12 of 12)	3800	NM_016170	3196		NM_001534	ENSG00000115297	TLX2	HOX11L1|NCX	T cell leukemia homeobox 2	protein-coding
138660	chr2	212882571	212882730	+	0	NA	Intergenic	MIR|SINE|MIR	-43607	NR_039935	100616267		NR_039935	ENSG00000266354	MIR4776-1	mir-4776-1	microRNA 4776-1	ncRNA
126938	chr2	33441271	33441430	+	0	NA	intron (NM_170672, intron 1 of 18)	L1MA9|LINE|L1	5002	NM_170672	25780		NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
218331	chr8	42804001	42804230	+	0	NA	Intergenic	MER67A|LTR|ERV1	-35329	NM_001199279	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
161986	chr3	46358451	46358750	+	0	NA	exon (NM_001123396, exon 2 of 2)	exon (NM_001123396, exon 2 of 2)	4489	NM_001123396	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
146160	chr20	48722251	48723550	+	0	NA	intron (NM_020820, intron 5 of 39)	intron (NM_020820, intron 5 of 39)	105099	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
68787	chr14	91222751	91223450	+	0	NA	intron (NM_001358311, intron 13 of 13)	MLT1A|LTR|ERVL-MaLR	21604	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
118207	chr19	35147021	35147480	+	0	NA	intron (NM_022006, intron 1 of 5)	MLT1I|LTR|ERVL-MaLR	3995	NM_022006	53822		NM_022006	ENSG00000221946	FXYD7	-	FXYD domain containing ion transport regulator 7	protein-coding
55261	chr12	102301151	102301300	+	0	NA	Intergenic	L1PB4|LINE|L1	-103392	NM_002674	5367		NM_002674	ENSG00000183395	PMCH	MCH|ppMCH	pro-melanin concentrating hormone	protein-coding
51269	chr12	51114671	51115080	+	0	NA	intron (NM_001173453, intron 4 of 13)	AluSq2|SINE|Alu	-31279	NM_030809	81566		NM_030809	ENSG00000110925	CSRNP2	C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12	cysteine and serine rich nuclear protein 2	protein-coding
26048	chr10	12485021	12485600	+	0	NA	intron (NM_001351032, intron 3 of 11)	intron (NM_001351032, intron 3 of 11)	-93443	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
143226	chr20	24977201	24977800	+	0	NA	intron (NM_020531, intron 3 of 8)	intron (NM_020531, intron 3 of 8)	15251	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
43257	chr11	75538221	75538800	+	0	NA	Intergenic	L2-1_AMi|LINE|L2	-12569	NM_030792	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
209038	chr7	74643371	74643900	+	0	NA	Intergenic	Intergenic	-14030	NM_001280800	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
102609	chr17	75939771	75939930	+	0	NA	Intergenic	Intergenic	-1618	NM_001319193	85302		NM_001080542	ENSG00000188878	FBF1	Alb|FBF-1	Fas binding factor 1	protein-coding
232607	chr9	136432471	136432830	+	0	NA	intron (NM_019892, intron 5 of 9)	CpG-29105	7195	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
229747	chr9	125146271	125146430	+	0	NA	TTS (NM_002721)	TTS (NM_002721)	-2822	NM_001144877	286205		NM_173690	ENSG00000173611	SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
201491	chr6	148999871	149000250	+	0	NA	intron (NM_005715, intron 5 of 7)	L1MEi|LINE|L1	32601	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
35236	chr11	838751	838850	+	0	NA	TTS (NM_004357)	TTS (NM_004357)	3729	NM_021128	5441		NM_021128	ENSG00000177700	POLR2L	RBP10|RPABC5|RPB10|RPB10beta|RPB7.6|hRPB7.6	RNA polymerase II, I and III subunit L	protein-coding
165844	chr3	105853301	105853500	+	0	NA	intron (NR_135807, intron 3 of 20)	intron (NR_135807, intron 3 of 20)	14191	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
214713	chr7	151006821	151007080	+	0	NA	exon (NM_000603, exon 16 of 27)	exon (NM_000603, exon 16 of 27)	13146	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
176526	chr4	95549621	95549880	+	0	NA	promoter-TSS (NM_003728)	promoter-TSS (NM_003728)	-777	NM_003728	8633		NM_003728	ENSG00000182168	UNC5C	UNC5H3	unc-5 netrin receptor C	protein-coding
76340	chr15	74429521	74429980	+	0	NA	intron (NM_001146029, intron 1 of 12)	intron (NM_001146029, intron 1 of 12)	3954	NM_001146030	8482		NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|PFIC11|SEMAK1|SEMAL	semaphorin 7A (JohnMiltonHagen blood group)	protein-coding
187927	chr5	148858951	148859250	+	0	NA	Intergenic	Intergenic	32489	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
190964	chr6	2944571	2944930	+	0	NA	Intergenic	Intergenic	17380	NM_001271825	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
137152	chr2	191070351	191070830	+	0	NA	intron (NM_003151, intron 5 of 23)	intron (NM_003151, intron 5 of 23)	49064	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
50446	chr12	47715301	47716300	+	0	NA	intron (NM_006025, intron 5 of 8)	intron (NM_006025, intron 5 of 8)	9690	NM_006025	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
27492	chr10	32253821	32254080	+	0	NA	Intergenic	Intergenic	93208	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
201760	chr6	149941551	149942730	+	0	NA	exon (NM_025217, exon 1 of 5)	exon (NM_025217, exon 1 of 5)	126	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
186863	chr5	139478601	139479000	+	0	NA	intron (NM_198282, intron 5 of 7)	intron (NM_198282, intron 5 of 7)	3958	NM_001367258	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
232957	chr9	136952821	136953280	+	0	NA	intron (NM_178536, intron 2 of 5)	CpG-29170	777	NM_178536	286256		NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
102959	chr17	76704851	76705650	+	0	NA	intron (NM_001008528, intron 1 of 3)	intron (NM_001008528, intron 1 of 3)	4347	NR_130926	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
34823	chr11	294551	294850	+	0	NA	exon (NM_025092, exon 14 of 14)	exon (NM_025092, exon 14 of 14)	4826	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
157406	chr22	44865801	44866200	+	0	NA	Intergenic	Intergenic	113425	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
136742	chr2	181281201	181281980	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	24062	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
34992	chr11	518111	519440	+	0	NA	Intergenic	CpG	-11533	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
13419	chr1	114129251	114129350	+	0	NA	intron (NM_205848, intron 3 of 7)	L2a|LINE|L2	23140	NM_205848	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
149348	chr21	29080421	29081480	+	0	NA	intron (NM_001371374, intron 2 of 11)	L4_A_Mam|LINE|RTE-X	3836	NM_001286623	56911		NM_020152	ENSG00000156265	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
52658	chr12	56313671	56314250	+	0	NA	TTS (NM_001190991)	TTS (NM_001190991)	2028	NM_014255	10330		NM_014255	ENSG00000257727	CNPY2	HP10390|MSAP|TMEM4|ZSIG9	canopy FGF signaling regulator 2	protein-coding
274	chr1	931351	931650	+	0	NA	intron (NM_001385641, intron 4 of 13)	intron (NM_001385641, intron 4 of 13)	5769	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
55796	chr12	108646021	108646680	+	0	NA	3' UTR (NM_001276471, exon 11 of 11)	3' UTR (NM_001276471, exon 11 of 11)	10540	NR_039717	100616240		NR_039717	ENSG00000284388	MIR4496	-	microRNA 4496	ncRNA
91677	chr17	5580171	5580800	+	0	NA	intron (NM_014922, intron 3 of 15)	L4_C_Mam|LINE|RTE-X	4024	NM_001033053	22861		NM_014922	ENSG00000091592	NLRP1	AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|JRRP|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
78572	chr15	93025521	93026030	+	0	NA	3' UTR (NM_001271, exon 39 of 39)	3' UTR (NM_001271, exon 39 of 39)	47381	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
104906	chr17	81900401	81900830	+	0	NA	TTS (NM_001282204)	TTS (NM_001282204)	-1623	NM_148896	256933		NM_148896	ENSG00000183979	NPB	L7|PPL7|PPNPB	neuropeptide B	protein-coding
4104	chr1	19257221	19257680	+	0	NA	intron (NM_016183, intron 4 of 7)	intron (NM_016183, intron 4 of 7)	5645	NM_016183	51154		NM_016183	ENSG00000053372	MRTO4	C1orf33|MRT4|dJ657E11.4	MRT4 homolog, ribosome maturation factor	protein-coding
47955	chr12	6856151	6856450	+	0	NA	intron (NR_168456, intron 4 of 19)	intron (NR_168456, intron 4 of 19)	4150	NR_168456	8078		NM_003481	ENSG00000111667	USP5	ISOT	ubiquitin specific peptidase 5	protein-coding
66514	chr14	61721151	61721250	+	0	NA	intron (NM_181054, intron 2 of 13)	AluSg4|SINE|Alu	23578	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
20650	chr1	200041471	200041830	+	0	NA	intron (NM_205860, intron 2 of 7)	CpG	-1175	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
198263	chr6	99523271	99523430	+	0	NA	intron (NM_001195131, intron 1 of 3)	AluSx|SINE|Alu	2301	NM_001195131	100130890		NM_001195131	ENSG00000279170	TSTD3	-	thiosulfate sulfurtransferase like domain containing 3	protein-coding
349	chr1	1007021	1007730	+	0	NA	Intergenic	AluSq|SINE|Alu	-6122	NM_005101	9636		NM_005101	ENSG00000187608	ISG15	G1P2|IFI15|IMD38|IP17|UCRP|hUCRP	ISG15 ubiquitin like modifier	protein-coding
141373	chr2	240693121	240693380	+	0	NA	intron (NM_198998, intron 2 of 3)	intron (NM_198998, intron 2 of 3)	1384	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
191962	chr6	16142501	16142800	+	0	NA	intron (NM_013262, intron 3 of 6)	MLT1F2|LTR|ERVL-MaLR	1094	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
31598	chr10	97360021	97360680	+	0	NA	intron (NM_015179, intron 31 of 33)	intron (NM_015179, intron 31 of 33)	-25621	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
218447	chr8	47959301	47960300	+	0	NA	intron (NM_006904, intron 1 of 85)	intron (NM_006904, intron 1 of 85)	336	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
239144	chrY	11324351	11325050	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1096890	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1871	chr1	6422521	6422780	+	0	NA	Intergenic	AluY|SINE|Alu	-2126	NM_031475	83715		NM_031475	ENSG00000187017	ESPN	DFNB36|LP2654|USH1M	espin	protein-coding
108178	chr18	63015951	63016800	+	0	NA	Intergenic	Intergenic	300834	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
104656	chr17	81480001	81480630	+	0	NA	Intergenic	Intergenic	-29127	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
57913	chr12	123479951	123480300	+	0	NA	intron (NM_001319243, intron 6 of 7)	intron (NM_001319243, intron 6 of 7)	20421	NM_180699	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
167107	chr3	127600271	127600430	+	0	NA	intron (NR_073375, intron 2 of 15)	intron (NR_073375, intron 2 of 15)	1939	NR_073375	4171		NM_004526	ENSG00000073111	MCM2	BM28|CCNL1|CDCL1|D3S3194|DFNA70|MITOTIN|cdc19	minichromosome maintenance complex component 2	protein-coding
204150	chr7	2383371	2383730	+	0	NA	Intergenic	Intergenic	-20061	NM_001243795	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
37140	chr11	13440251	13440350	+	0	NA	promoter-TSS (NM_001297742)	promoter-TSS (NM_001297742)	-21	NM_001297742	84280		NM_032320	ENSG00000148925	BTBD10	GMRP-1|GMRP1	BTB domain containing 10	protein-coding
11628	chr1	91737201	91737600	+	0	NA	intron (NR_036634, intron 5 of 17)	MIRc|SINE|MIR	148751	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
58485	chr12	132153671	132154630	+	0	NA	Intergenic	Intergenic	9693	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
226299	chr9	68560001	68560530	+	0	NA	Intergenic	Intergenic	-13663	NR_109769	101927015		NR_109769		LINC01506	-	long intergenic non-protein coding RNA 1506	ncRNA
110757	chr19	2361121	2361430	+	0	NA	Intergenic	Intergenic	-23990	NM_182973	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
100348	chr17	59907551	59907850	+	0	NA	intron (NM_001272044, intron 2 of 15)	AluJr|SINE|Alu	14579	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
24218	chr1	236137501	236137930	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-4824	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
171530	chr3	196710451	196710780	+	0	NA	intron (NM_001379470, intron 1 of 2)	AluJr|SINE|Alu	1635	NM_001379468	84984		NM_032898	ENSG00000174007	CEP19	C3orf34|MOSPGF	centrosomal protein 19	protein-coding
181145	chr5	38455671	38456080	+	0	NA	intron (NM_182801, intron 3 of 5)	intron (NM_182801, intron 3 of 5)	10329	NM_182801	133584		NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
77928	chr15	89319521	89320000	+	0	NA	intron (NM_002693, intron 18 of 22)	intron (NM_002693, intron 18 of 22)	7050	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
300	chr1	962501	963280	+	0	NA	exon (NM_198317, exon 6 of 12)	exon (NM_198317, exon 6 of 12)	2306	NM_198317	339451		NM_198317	ENSG00000187961	KLHL17	AF	kelch like family member 17	protein-coding
139994	chr2	230932771	230933280	+	0	NA	Intergenic	Intergenic	-7783	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
106453	chr18	13728371	13729200	+	0	NA	intron (NM_001378134, intron 1 of 10)	L1MA4|LINE|L1	2112	NM_001378134	8731		NM_003799	ENSG00000101654	RNMT	CMT1|CMT1c|MET|Met|N7-MTase|RG7MT1|cm1p|hCMT1|hMet	RNA guanine-7 methyltransferase	protein-coding
176722	chr4	101289651	101290230	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	40474	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
47437	chr12	3397551	3397730	+	0	NA	intron (NM_001256536, intron 1 of 9)	L1PA3|LINE|L1	16291	NM_001256536	56341		NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
29774	chr10	72265801	72266450	+	0	NA	Intergenic	Intergenic	-7799	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
209292	chr7	75988521	75989530	+	0	NA	intron (NR_156695, intron 4 of 10)	intron (NR_156695, intron 4 of 10)	5570	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
123555	chr19	54413601	54414200	+	0	NA	Intergenic	(TCA)n|Simple_repeat|Simple_repeat	-1564	NM_001005367	57348		NM_020659	ENSG00000167614	TTYH1	-	tweety family member 1	protein-coding
138355	chr2	203936401	203937100	+	0	NA	promoter-TSS (NM_012092)	promoter-TSS (NM_012092)	-13	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
162009	chr3	46426621	46426880	+	0	NA	Intergenic	LTR3A|LTR|ERVK	-3083	NR_151704	105377068		NR_151704	ENSG00000283646	LINC02009	-	long intergenic non-protein coding RNA 2009	ncRNA
234848	chrX	24498871	24499280	+	0	NA	intron (NM_001142386, intron 3 of 11)	intron (NM_001142386, intron 3 of 11)	33789	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
555	chr1	1248051	1248250	+	0	NA	Intergenic	Intergenic	-1428	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
222103	chr8	131036971	131037150	+	0	NA	intron (NM_001115, intron 1 of 17)	intron (NM_001115, intron 1 of 17)	3849	NM_001115	114		NM_001115	ENSG00000155897	ADCY8	AC8|ADCY3|HBAC1	adenylate cyclase 8	protein-coding
23494	chr1	228646711	228647400	+	0	NA	promoter-TSS (NR_023363).10	promoter-TSS (NR_023363).10	-897	NR_023374	100169763		NR_023374	ENSG00000199270	RNA5S12	RN5S12	RNA, 5S ribosomal 12	rRNA
91368	chr17	4541751	4542050	+	0	NA	intron (NM_014520, intron 22 of 25)	intron (NM_014520, intron 22 of 25)	13484	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
136546	chr2	177391671	177391830	+	0	NA	intron (NR_026966, intron 1 of 8)	MER58C|DNA|hAT-Charlie	941	NR_026966	100130691		NM_182585	ENSG00000213963	LOC100130691	-	Putative uncharacterized protein FLJ44553	ncRNA
187174	chr5	140641721	140642180	+	0	NA	exon (NM_001300980, exon 4 of 12)	exon (NM_001300980, exon 4 of 12)	2499	NM_018502	55374		NM_018502	ENSG00000113119	TMCO6	PRO1580	transmembrane and coiled-coil domains 6	protein-coding
220780	chr8	102557051	102557550	+	0	NA	intron (NM_024410, intron 1 of 1)	intron (NM_024410, intron 1 of 1)	5711	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
29615	chr10	71763551	71764300	+	0	NA	intron (NM_022153, intron 1 of 6)	MamTip2|DNA|hAT-Tip100	9595	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
185967	chr5	133061771	133061930	+	0	NA	intron (NM_002154, intron 1 of 18)	AluSx|SINE|Alu	9837	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
111423	chr19	3783471	3784080	+	0	NA	intron (NM_139355, intron 6 of 13)	intron (NM_139355, intron 6 of 13)	2606	NM_139355	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
125463	chr2	12284571	12284750	+	0	NA	intron (NR_110196, intron 3 of 5)	L1MB5|LINE|L1	85530	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
30104	chr10	73969601	73969800	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-28416	NM_014000	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
124065	chr19	55601971	55602130	+	0	NA	intron (NM_153219, intron 1 of 1)	intron (NM_153219, intron 1 of 1)	1762	NM_153219	147807		NM_153219	ENSG00000171443	ZNF524	-	zinc finger protein 524	protein-coding
209127	chr7	75071201	75071400	+	0	NA	intron (NM_148842, intron 1 of 10)	intron (NM_148842, intron 1 of 10)	2502	NM_030798	81554		NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
139129	chr2	218993251	218994350	+	0	NA	promoter-TSS (NM_057093)	promoter-TSS (NM_057093)	-378	NM_057094	1412		NM_057093	ENSG00000163499	CRYBA2	CTRCT42	crystallin beta A2	protein-coding
178928	chr4	158837821	158838080	+	0	NA	intron (NM_001366843, intron 8 of 17)	intron (NM_001366843, intron 8 of 17)	32111	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
48831	chr12	12348321	12348850	+	0	NA	intron (NM_001363613, intron 1 of 4)	L1MC2|LINE|L1	1657	NM_001363613	54682		NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
89292	chr16	88700271	88703000	+	0	NA	intron (NM_178841, intron 1 of 5)	intron (NM_178841, intron 1 of 5)	1946	NM_001171816	115992		NM_178841	ENSG00000158717	RNF166	-	ring finger protein 166	protein-coding
17882	chr1	160072001	160072200	+	0	NA	Intergenic	L2c|LINE|L2	-1940	NM_002241	3766		NM_002241	ENSG00000177807	KCNJ10	BIRK-10|KCNJ13-PEN|KIR1.2|KIR4.1|SESAME	potassium inwardly rectifying channel subfamily J member 10	protein-coding
152620	chr22	21425121	21425930	+	0	NA	intron (NM_015094, intron 1 of 2)	AluSz6|SINE|Alu	8154	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
179238	chr4	174222051	174222580	+	0	NA	Intergenic	L2a|LINE|L2	-1917	NR_125896	101928509		NR_125896	ENSG00000248174	LINC02268	-	long intergenic non-protein coding RNA 2268	ncRNA
131471	chr2	96414351	96414550	+	0	NA	Intergenic	MER34C2|LTR|ERV1	78684	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
187402	chr5	141922201	141922650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1446	NM_001142603	9812		NM_014773	ENSG00000081791	DELE1	DELE|DELE1(L)|KIAA0141	DAP3 binding cell death enhancer 1	protein-coding
127231	chr2	38653571	38654700	+	0	NA	Intergenic	MER21C|LTR|ERVL	-11979	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
50827	chr12	49102021	49102280	+	0	NA	exon (NM_001352165, exon 11 of 17)	exon (NM_001352165, exon 11 of 17)	-7349	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
142621	chr20	5607051	5607880	+	0	NA	intron (NM_019593, intron 1 of 19)	AluSg|SINE|Alu	3541	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
162303	chr3	47415971	47416700	+	0	NA	intron (NM_001320044, intron 15 of 19)	intron (NM_001320044, intron 15 of 19)	35314	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
115646	chr19	16115401	16115800	+	0	NA	intron (NM_005370, intron 1 of 7)	intron (NM_005370, intron 1 of 7)	3711	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
189254	chr5	172042301	172042880	+	0	NA	3' UTR (NM_005990, exon 19 of 19)	3' UTR (NM_005990, exon 19 of 19)	-35952	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
44201	chr11	96281301	96281500	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-60038	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
160005	chr3	18386451	18386750	+	0	NA	exon (NM_001322872, exon 9 of 12)	exon (NM_001322872, exon 9 of 12)	38739	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
119432	chr19	40363271	40363430	+	0	NA	intron (NM_001291311, intron 1 of 12)	intron (NM_001291311, intron 1 of 12)	3708	NM_001291311	23646		NM_012268	ENSG00000105223	PLD3	AD19|HU-K4|HUK4|SCA46	phospholipase D family member 3	protein-coding
48138	chr12	7907001	7908050	+	0	NA	Intergenic	AluSg|SINE|Alu	-16329	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
215140	chr7	155454851	155455150	+	0	NA	Intergenic	CpG	-3129	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
49264	chr12	19480521	19480780	+	0	NA	intron (NM_153207, intron 3 of 7)	L1PB2|LINE|L1	40051	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
231255	chr9	129993271	129994230	+	0	NA	intron (NM_001363755, intron 2 of 15)	AluSx1|SINE|Alu	49439	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
89561	chr16	89250151	89250250	+	0	NA	Intergenic	LOR1a|LTR|ERV1	32497	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
18543	chr1	162400801	162401000	+	0	NA	intron (NM_053282, intron 2 of 3)	AluSx1|SINE|Alu	11236	NM_053282	117157		NM_053282	ENSG00000198574	SH2D1B	EAT2	SH2 domain containing 1B	protein-coding
141079	chr2	238285401	238286280	+	0	NA	intron (NM_022817, intron 1 of 22)	intron (NM_022817, intron 1 of 22)	2770	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
113161	chr19	8363571	8364580	+	0	NA	promoter-TSS (NM_001039667)	promoter-TSS (NM_001039667)	-80	NR_104213	51129		NM_016109	ENSG00000167772	ANGPTL4	ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158	angiopoietin like 4	protein-coding
75044	chr15	64156001	64156200	+	0	NA	exon (NM_000942, exon 5 of 5)	exon (NM_000942, exon 5 of 5)	4369	NM_024798	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
180451	chr5	10627371	10628230	+	0	NA	intron (NM_001164440, intron 2 of 3)	intron (NM_001164440, intron 2 of 3)	63730	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
84504	chr16	30502371	30502730	+	0	NA	intron (NM_002209, intron 17 of 30)	AluSq2|SINE|Alu	-1369	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
115990	chr19	17089201	17089400	+	0	NA	intron (NM_004145, intron 1 of 39)	intron (NM_004145, intron 1 of 39)	-2935	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
128536	chr2	60805401	60806000	+	0	NA	Intergenic	MIR|SINE|MIR	49432	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
133336	chr2	113909471	113909630	+	0	NA	intron (NM_001277140, intron 1 of 11)	L2b|LINE|L2	-18558	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
155910	chr22	39558351	39558450	+	0	NA	Intergenic	CpG	-12353	NM_021096	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
112458	chr19	6383001	6383980	+	0	NA	exon (NM_002096, exon 6 of 13)	exon (NM_002096, exon 6 of 13)	6213	NR_106945	102465533		NR_106945	ENSG00000274390	MIR6885	hsa-mir-6885	microRNA 6885	ncRNA
91924	chr17	7322051	7322550	+	0	NA	intron (NM_032442, intron 16 of 28)	AluJb|SINE|Alu	-6940	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
8369	chr1	40339751	40340050	+	0	NA	Intergenic	L2b|LINE|L2	-22614	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
116045	chr19	17207851	17208950	+	0	NA	intron (NM_004145, intron 35 of 39)	intron (NM_004145, intron 35 of 39)	-6957	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
128811	chr2	62706871	62707230	+	0	NA	5' UTR (NM_001354218, exon 2 of 23)	5' UTR (NM_001354218, exon 2 of 23)	153	NM_001354217	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
102812	chr17	76442701	76442900	+	0	NA	intron (NM_022066, intron 1 of 17)	intron (NM_022066, intron 1 of 17)	10352	NM_022066	63893		NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin conjugating enzyme E2 O	protein-coding
25639	chr10	8183071	8183850	+	0	NA	Intergenic	Intergenic	84845	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
21631	chr1	206592321	206592780	+	0	NA	intron (NM_001201478, intron 12 of 12)	L2c|LINE|L2	19915	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
69144	chr14	92551271	92552850	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	-24174	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
227307	chr9	89423751	89424200	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	55915	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
75552	chr15	66903601	66904030	+	0	NA	Intergenic	Intergenic	52700	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
166518	chr3	114344571	114345130	+	0	NA	intron (NR_121662, intron 6 of 6)	intron (NR_121662, intron 6 of 6)	-6961	NR_038993	100131117		NR_038993	ENSG00000241560	ZBTB20-AS1	-	ZBTB20 antisense RNA 1	ncRNA
6303	chr1	27625971	27626830	+	0	NA	promoter-TSS (NM_001042747)	promoter-TSS (NM_001042747)	-160	NM_001042747	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
163762	chr3	52371971	52372200	+	0	NA	exon (NM_015512, exon 42 of 78)	exon (NM_015512, exon 42 of 78)	37923	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
145911	chr20	45973471	45973630	+	0	NA	Intergenic	AluSp|SINE|Alu	-1347	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
193582	chr6	30681871	30683180	+	0	NA	intron (NM_133471, intron 1 of 2).5	intron (NM_133471, intron 1 of 2).5	4120	NM_133471	170954		NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding
121881	chr19	48332001	48333500	+	0	NA	non-coding (NR_130317, exon 6 of 6)	non-coding (NR_130317, exon 6 of 6)	6751	NM_001313905	2014		NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3 (MAM blood group)	protein-coding
92251	chr17	7931601	7933200	+	0	NA	promoter-TSS (NR_030684)	promoter-TSS (NR_030684)	194	NM_001353206	116840		NM_053051	ENSG00000170037	CNTROB	LIP8|PP1221	centrobin, centriole duplication and spindle assembly protein	protein-coding
77364	chr15	82813001	82813200	+	0	NA	intron (NM_001080435, intron 1 of 9)	intron (NM_001080435, intron 1 of 9)	3472	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
235412	chrX	45756201	45756850	+	0	NA	Intergenic	L1MA9|LINE|L1	-9401	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
172252	chr4	1365821	1366280	+	0	NA	intron (NM_001317935, intron 7 of 13)	intron (NM_001317935, intron 7 of 13)	18494	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
32352	chr10	102361501	102362130	+	0	NA	exon (NM_004193, exon 14 of 40)	exon (NM_004193, exon 14 of 40)	-32295	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
33832	chr10	124035771	124036250	+	0	NA	intron (NM_014863, intron 5 of 5)	intron (NM_014863, intron 5 of 5)	56396	NM_014863	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
136579	chr2	177973551	177973650	+	0	NA	intron (NM_016953, intron 2 of 19)	L1HS|LINE|L1	-50763	NM_001077358	50940		NM_016953	ENSG00000128655	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
34465	chr10	132450171	132451000	+	0	NA	Intergenic	Intergenic	5396	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
206577	chr7	35687351	35687680	+	0	NA	intron (NM_022373, intron 2 of 8)	intron (NM_022373, intron 2 of 8)	7620	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
93987	chr17	21982951	21983330	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-219855	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
221030	chr8	116703351	116703850	+	0	NA	intron (NM_003756, intron 2 of 7)	LTR13_|LTR|ERVK	51500	NR_136278	105375713		NR_136278	ENSG00000289382	LOC105375713	-	uncharacterized LOC105375713	ncRNA
128317	chr2	54659121	54659380	+	0	NA	exon (NM_003128, exon 31 of 36)	exon (NM_003128, exon 31 of 36)	-65762	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133517	chr2	120176551	120177850	+	0	NA	3' UTR (NM_001330310, exon 25 of 25)	3' UTR (NM_001330310, exon 25 of 25)	46200	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
203519	chr7	726171	727900	+	0	NA	exon (NM_017802, exon 1 of 13)	exon (NM_017802, exon 1 of 13)	246	NM_001164760	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
39894	chr11	62503201	62503400	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	42364	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
27965	chr10	42435851	42436050	+	0	NA	intron (NR_103829, intron 3 of 8)	L1PA2|LINE|L1	36290	NR_103829	414194		NR_103829	ENSG00000290445	CCNYL2	C10orf21|CCNYL2P|bA178A10.2	cyclin Y like 2 (pseudogene)	pseudo
143142	chr20	23927271	23927880	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-47827	NM_001900	1473		NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
213003	chr7	131004071	131004630	+	0	NA	intron (NR_109850, intron 3 of 5)	AluSz|SINE|Alu	90886	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
114937	chr19	13974901	13975230	+	0	NA	intron (NM_002918, intron 8 of 20)	intron (NM_002918, intron 8 of 20)	-21673	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
40660	chr11	64743501	64744900	+	0	NA	promoter-TSS (NM_001318398)	promoter-TSS (NM_001318398)	-58	NM_001318398	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
176895	chr4	102791451	102791830	+	0	NA	intron (NR_125932, intron 4 of 4)	AluJo|SINE|Alu	14603	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
211350	chr7	104952271	104952430	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-25705	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
1521	chr1	3012521	3012780	+	0	NA	Intergenic	CpG	-8817	NM_080431	140625		NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin related protein T2	protein-coding
43531	chr11	82756751	82757250	+	0	NA	Intergenic	MIRb|SINE|MIR	-23136	NM_175885	220382		NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
184459	chr5	100566671	100567230	+	0	NA	intron (NM_198507, intron 2 of 2)	intron (NM_198507, intron 2 of 2)	31576	NM_198507	345757		NM_198507	ENSG00000174132	FAM174A	HGS_RE408|NS5ATP6|TMEM157|UNQ1912	family with sequence similarity 174 member A	protein-coding
34490	chr10	132540621	132541050	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	3048	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
16717	chr1	155240951	155242300	+	0	NA	promoter-TSS (NM_000157)	promoter-TSS (NM_000157)	-376	NM_000157	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
121387	chr19	46913651	46914230	+	0	NA	intron (NM_004491, intron 1 of 6)	intron (NM_004491, intron 1 of 6)	52943	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
235741	chrX	48941401	48942830	+	0	NA	intron (NM_001136157, intron 2 of 8)	(AC)n|Simple_repeat|Simple_repeat	15492	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
229768	chr9	125197171	125197630	+	0	NA	Intergenic	AluSg7|SINE|Alu	2996	NR_135145	105376271		NR_135145		LOC105376271	-	uncharacterized LOC105376271	ncRNA
92771	chr17	15592801	15593200	+	0	NA	intron (NM_006382, intron 11 of 11)	AluSg7|SINE|Alu	26704	NM_006382	374286		NM_006382	ENSG00000241322	FBXW10B	C170RF1|C17ORF1|C17ORF1A|CDRT1|FBXW10P1|HREP|SM25H2	F-box and WD repeat domain containing 10B	protein-coding
88380	chr16	84606201	84607050	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	11453	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
227801	chr9	93156621	93157280	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-22699	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
217854	chr8	37786251	37786750	+	0	NA	Intergenic	Intergenic	-10383	NM_032777	25960		NM_032777	ENSG00000020181	ADGRA2	GPR124|TEM5	adhesion G protein-coupled receptor A2	protein-coding
76019	chr15	71839071	71839430	+	0	NA	intron (NM_006901, intron 39 of 41)	intron (NM_006901, intron 39 of 41)	28696	NM_016346	10002		NM_014249	ENSG00000278570	NR2E3	ESCS|PNR|RNR|RP37|rd7	nuclear receptor subfamily 2 group E member 3	protein-coding
27990	chr10	43104621	43106150	+	0	NA	intron (NM_020975, intron 4 of 19)	CpG	653	NM_001355216	5979		NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1	ret proto-oncogene	protein-coding
40695	chr11	64776701	64776900	+	0	NA	intron (NM_201995, intron 1 of 13)	intron (NM_201995, intron 1 of 13)	961	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
143099	chr20	23349731	23352150	+	0	NA	5' UTR (NM_013248, exon 1 of 2)	5' UTR (NM_013248, exon 1 of 2)	149	NM_013248	29107		NM_013248	ENSG00000132661	NXT1	MTR2|P15	nuclear transport factor 2 like export factor 1	protein-coding
58296	chr12	130818351	130819310	+	0	NA	intron (NM_001980, intron 3 of 9)	CpG	20420	NM_001351051	2054		NM_001980	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
227665	chr9	92978221	92979250	+	0	NA	intron (NM_001369951, intron 3 of 17)	(CCCTC)n|Simple_repeat|Simple_repeat	4266	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
13843	chr1	117641901	117642150	+	0	NA	Intergenic	Intergenic	35977	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
152174	chr22	20089551	20089650	+	0	NA	intron (NM_022720, intron 3 of 13)	intron (NM_022720, intron 3 of 13)	3542	NR_031706	100302197		NR_031706	ENSG00000284464	MIR1306	MIRN1306|hsa-mir-1306|mir-1306	microRNA 1306	ncRNA
83452	chr16	27328301	27328500	+	0	NA	intron (NM_001257997, intron 1 of 9)	AluSx1|SINE|Alu	14426	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
133760	chr2	127635901	127636100	+	0	NA	intron (NM_001080527, intron 43 of 46)	intron (NM_001080527, intron 43 of 46)	-9864	NM_001161415	2840		NM_005291	ENSG00000144230	GPR17	-	G protein-coupled receptor 17	protein-coding
59663	chr13	28532401	28532880	+	0	NA	Intergenic	CpG	-37512	NM_001160030	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
191134	chr6	4126171	4126330	+	0	NA	intron (NM_206836, intron 5 of 9)	intron (NM_206836, intron 5 of 9)	9218	NM_001166010	10455		NM_006117	ENSG00000198721	ECI2	ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3	enoyl-CoA delta isomerase 2	protein-coding
220852	chr8	103279151	103279330	+	0	NA	intron (NR_148213, intron 2 of 3)	intron (NR_148213, intron 2 of 3)	-19254	NM_001164615	8323		NM_003506	ENSG00000164930	FZD6	FZ-6|FZ6|HFZ6|NDNC1|NDNC10	frizzled class receptor 6	protein-coding
83234	chr16	23847771	23848780	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	12292	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
92948	chr17	17016251	17017330	+	0	NA	Intergenic	Intergenic	-25667	NM_001364716	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
35125	chr11	697871	698180	+	0	NA	intron (NM_001042463, intron 1 of 4)	intron (NM_001042463, intron 1 of 4)	2209	NM_001276274	283232		NM_174940	ENSG00000177042	TMEM80	-	transmembrane protein 80	protein-coding
133491	chr2	119937721	119938180	+	0	NA	intron (NM_002830, intron 15 of 26)	FAM|SINE|Alu	-75127	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
38532	chr11	45899321	45900600	+	0	NA	intron (NM_005456, intron 2 of 11)	CpG	7311	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
10269	chr1	64630601	64630800	+	0	NA	intron (NM_001293274, intron 5 of 25)	intron (NM_001293274, intron 5 of 25)	50853	NR_039957	100616338		NR_039957	ENSG00000264470	MIR4794	-	microRNA 4794	ncRNA
29432	chr10	70331521	70332080	+	0	NA	intron (NR_103467, intron 1 of 2)	intron (NR_103467, intron 1 of 2)	44979	NM_001278213	55222		NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
73872	chr15	50348801	50349480	+	0	NA	non-coding (NR_026891, exon 1 of 1)	non-coding (NR_026891, exon 1 of 1)	-5034	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
144625	chr20	35887801	35888400	+	0	NA	intron (NM_016436, intron 9 of 17)	AluSp|SINE|Alu	66402	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
170364	chr3	184602401	184603130	+	0	NA	Intergenic	Intergenic	40980	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
60763	chr13	44991001	44991200	+	0	NA	intron (NM_018559, intron 1 of 7)	AluSx1|SINE|Alu	1562	NM_018559	55425		NM_018559	ENSG00000133114	GPALPP1	AD029|KIAA1704|LSR7|bA245H20.2	GPALPP motifs containing 1	protein-coding
228287	chr9	98087271	98088150	+	0	NA	exon (NM_033219, exon 6 of 7)	exon (NM_033219, exon 6 of 7)	30978	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
232900	chr9	136854001	136854200	+	0	NA	intron (NM_206920, intron 6 of 26)	intron (NM_206920, intron 6 of 26)	1754	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
427	chr1	1088971	1089330	+	0	NA	intron (NM_017891, intron 4 of 9)	CpG	-14844	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
198686	chr6	108072201	108072400	+	0	NA	intron (NM_014028, intron 1 of 5)	intron (NM_014028, intron 1 of 5)	2441	NM_014028	28962		NM_014028	ENSG00000081087	OSTM1	GIPN|GL|HSPC019|OPTB5	osteoclastogenesis associated transmembrane protein 1	protein-coding
165434	chr3	98533201	98533600	+	0	NA	3' UTR (NM_005290, exon 1 of 1)	3' UTR (NM_005290, exon 1 of 1)	1422	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
95867	chr17	38848301	38848780	+	0	NA	3' UTR (NM_000978, exon 5 of 5)	3' UTR (NM_000978, exon 5 of 5)	3118	NR_145761	109617002		NR_145761	ENSG00000252699	SNORA21B	-	small nucleolar RNA, H/ACA box 21B	snoRNA
59009	chr13	20159301	20159850	+	0	NA	intron (NM_021954, intron 1 of 1)	intron (NM_021954, intron 1 of 1)	1477	NM_021954	2700		NM_021954	ENSG00000121743	GJA3	CTRCT14|CX46|CZP3	gap junction protein alpha 3	protein-coding
214278	chr7	149024871	149025500	+	0	NA	intron (NR_163905, intron 1 of 9)	intron (NR_163905, intron 1 of 9)	124	NR_163909	9601		NM_004911	ENSG00000155660	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A member 4	protein-coding
123632	chr19	54622121	54622980	+	0	NA	intron (NM_006669, intron 1 of 15).2	L1PA15-16|LINE|L1	5620	NM_006669	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
122061	chr19	48683351	48683650	+	0	NA	Intergenic	MER50|LTR|ERV1	-10483	NM_145807	126147		NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
108062	chr18	59833971	59834330	+	0	NA	Intergenic	Intergenic	-65846	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
11446	chr1	89845071	89845500	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	23346	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
118250	chr19	35240071	35240750	+	0	NA	Intergenic	MER90a|LTR|ERV1	-8592	NM_015925	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
14471	chr1	144483851	144484180	+	0	NA	Intergenic	AluJb|SINE|Alu	-22346	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
152402	chr22	20555201	20555880	+	0	NA	intron (NM_001003891, intron 5 of 17)	intron (NM_001003891, intron 5 of 17)	47493	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
190513	chr5	180525471	180525850	+	0	NA	intron (NR_163437, intron 2 of 12)	MIRb|SINE|MIR	-15994	NM_001370474	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
187620	chr5	142978921	142979380	+	0	NA	intron (NR_146198, intron 11 of 22)	L1MC5a|LINE|L1	-110240	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
29254	chr10	69109051	69109780	+	0	NA	Intergenic	AluSx|SINE|Alu	-14738	NM_001035260	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
132156	chr2	101750871	101751330	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	52835	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
191616	chr6	12150851	12151150	+	0	NA	intron (NM_002114, intron 7 of 8)	intron (NM_002114, intron 7 of 8)	138688	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
221217	chr8	120917101	120917300	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-105154	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
141046	chr2	238238871	238239400	+	0	NA	exon (NM_001282434, exon 4 of 4)	exon (NM_001282434, exon 4 of 4)	903	NM_001282434	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
232650	chr9	136478551	136478850	+	0	NA	intron (NM_001276418, intron 1 of 28)	AluJo|SINE|Alu	-4310	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
66135	chr14	60183421	60184530	+	0	NA	Intergenic	Intergenic	-14111	NM_001322280	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
206320	chr7	30289501	30289800	+	0	NA	promoter-TSS (NR_030319)	promoter-TSS (NR_030319)	-144	NR_030319	693133		NR_030319	ENSG00000207771	MIR550A1	MIR550-1|MIRN550-1|hsa-mir-550a-1|mir-550a-1	microRNA 550a-1	ncRNA
81164	chr16	4423551	4424200	+	0	NA	Intergenic	Intergenic	-1930	NM_001286516	9093		NM_005147	ENSG00000103423	DNAJA3	HCA57|TID1|Tid1-L|Tid1-S|hTID-1	DnaJ heat shock protein family (Hsp40) member A3	protein-coding
74587	chr15	60559101	60559780	+	0	NA	intron (NM_134260, intron 1 of 11)	Tigger15a|DNA|TcMar-Tigger	33086	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
213309	chr7	135163601	135163800	+	0	NA	intron (NM_018295, intron 1 of 1)	L1ME4a|LINE|L1	5774	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
115679	chr19	16184771	16186780	+	0	NA	intron (NM_014077, intron 2 of 3)	CpG	365	NM_014077	26017		NM_014077	ENSG00000105058	FAM32A	OTAG-12|OTAG12	family with sequence similarity 32 member A	protein-coding
44886	chr11	114401771	114401930	+	0	NA	exon (NM_016090, exon 2 of 5)	exon (NM_016090, exon 2 of 5)	1184	NM_016090	10179		NM_016090	ENSG00000076053	RBM7	-	RNA binding motif protein 7	protein-coding
99436	chr17	50118801	50119950	+	0	NA	intron (NM_174920, intron 2 of 10)	intron (NM_174920, intron 2 of 10)	10785	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
67890	chr14	74459601	74459900	+	0	NA	Intergenic	Intergenic	20454	NR_039858	100616211		NR_039858	ENSG00000283944	MIR4709	mir-4709	microRNA 4709	ncRNA
121014	chr19	45786321	45786580	+	0	NA	exon (NM_004943, exon 3 of 5)	exon (NM_004943, exon 3 of 5)	-3960	NM_001081560	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
72897	chr15	40336571	40337080	+	0	NA	intron (NM_207380, intron 7 of 10)	intron (NM_207380, intron 7 of 10)	4142	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
64576	chr14	24690501	24690980	+	0	NA	Intergenic	Intergenic	-56550	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
42596	chr11	72072671	72073150	+	0	NA	promoter-TSS (NR_036123)	promoter-TSS (NR_036123)	-608	NR_036123	100422953		NR_036123	ENSG00000263742	MIR3165	mir-3165	microRNA 3165	ncRNA
151225	chr21	45256721	45257780	+	0	NA	intron (NR_135279, intron 2 of 2)	intron (NR_135279, intron 2 of 2)	22910	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
65549	chr14	51929721	51930780	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-11679	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
61541	chr13	60395751	60397100	+	0	NA	promoter-TSS (NM_001146071)	promoter-TSS (NM_001146071)	-32	NM_001146071	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
229796	chr9	125265651	125266150	+	0	NA	intron (NR_148732, intron 2 of 26)	FLAM_C|SINE|Alu	4074	NM_001354295	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
41192	chr11	65639401	65641360	+	0	NA	intron (NM_153253, intron 1 of 15)	intron (NM_153253, intron 1 of 15)	259	NM_153253	6494		NM_006747	ENSG00000213445	SIPA1	SPA1	signal-induced proliferation-associated 1	protein-coding
143393	chr20	29298621	29298880	+	0	NA	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	118211	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
16925	chr1	155899221	155900380	+	0	NA	3' UTR (NM_006912, exon 6 of 6)	3' UTR (NM_006912, exon 6 of 6)	11118	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
67865	chr14	74244821	74245600	+	0	NA	exon (NM_182894, exon 3 of 5)	exon (NM_182894, exon 3 of 5)	5761	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
208969	chr7	74196321	74196830	+	0	NA	3' UTR (NM_031992, exon 6 of 6)	3' UTR (NM_031992, exon 6 of 6)	5377	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
138967	chr2	218269621	218271130	+	0	NA	promoter-TSS (NM_001077399)	promoter-TSS (NM_001077399)	-144	NM_015488	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
128084	chr2	47888271	47889280	+	0	NA	promoter-TSS (NM_025133)	promoter-TSS (NM_025133)	-56	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
185355	chr5	127182751	127182850	+	0	NA	Intergenic	LTR12|LTR|ERV1	-107964	NM_001308121	84466		NM_032446	ENSG00000145794	MEGF10	CMYP10A|CMYP10B|EMARDD|SR-F3	multiple EGF like domains 10	protein-coding
207056	chr7	39731901	39732100	+	0	NA	Intergenic	LTR55|LTR|ERVL?	-1568	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
22737	chr1	224334301	224334500	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4211	NM_206840	4931		NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP like	protein-coding
12644	chr1	109240701	109241380	+	0	NA	Intergenic	AluSx|SINE|Alu	-8499	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
194497	chr6	33271151	33272670	+	0	NA	promoter-TSS (NM_022553)	promoter-TSS (NM_022553)	-34	NM_001289174	6293		NM_022553	ENSG00000223501	VPS52	ARE1|SAC2|SACM2L|dJ1033B10.5	VPS52 subunit of GARP complex	protein-coding
170408	chr3	185559051	185559930	+	0	NA	Intergenic	AluSg7|SINE|Alu	-6902	NM_139248	200879		NM_139248	ENSG00000163898	LIPH	AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1	lipase H	protein-coding
211444	chr7	105075151	105075450	+	0	NA	intron (NM_182931, intron 8 of 26)	intron (NM_182931, intron 8 of 26)	61095	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
33802	chr10	123149571	123150180	+	0	NA	exon (NM_005519, exon 2 of 2)	exon (NM_005519, exon 2 of 2)	1753	NM_005519	3167		NM_005519	ENSG00000188816	HMX2	H6L|Nkx5-2	H6 family homeobox 2	protein-coding
6300	chr1	27621521	27622080	+	0	NA	intron (NM_001042747, intron 4 of 12)	intron (NM_001042747, intron 4 of 12)	4440	NM_001042747	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
227007	chr9	83699101	83700080	+	0	NA	intron (NM_053067, intron 1 of 9)	AluJo|SINE|Alu	-8245	NR_135839	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
15385	chr1	150163021	150164180	+	0	NA	intron (NR_135098, intron 1 of 3)	intron (NR_135098, intron 1 of 3)	2872	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
153958	chr22	30354171	30354350	+	0	NA	intron (NM_005877, intron 1 of 15)	intron (NM_005877, intron 1 of 15)	-2364	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
96643	chr17	40606571	40606930	+	0	NA	Intergenic	MER41C|LTR|ERV1	41068	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
220564	chr8	100721701	100723800	+	0	NA	promoter-TSS (NM_002568)	promoter-TSS (NM_002568)	-662	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
217475	chr8	28881321	28881800	+	0	NA	intron (NM_001363038, intron 1 of 16)	SVA_E|Retroposon|SVA	8355	NM_001172562	55756		NM_018250	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
116345	chr19	17861101	17861630	+	0	NA	exon (NM_000980, exon 2 of 5)	exon (NM_000980, exon 2 of 5)	-1223	NR_000012	26780		NR_000012	ENSG00000207166	SNORA68	RNU68|SNORA68A|U68	small nucleolar RNA, H/ACA box 68	snoRNA
21601	chr1	206556151	206556250	+	0	NA	promoter-TSS (NM_182665)	promoter-TSS (NM_182665)	-964	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
45786	chr11	119312251	119312550	+	0	NA	TTS (NR_106814)	TTS (NR_106814)	612	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
25609	chr10	8065621	8066400	+	0	NA	intron (NM_001002295, intron 4 of 5)	L1MEg|LINE|L1	11322	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
118556	chr19	36138321	36138580	+	0	NA	Intergenic	AluJb|SINE|Alu	-1616	NM_001003962	826		NM_001749	ENSG00000126247	CAPNS1	CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1|PPH6	calpain small subunit 1	protein-coding
116870	chr19	18651321	18651580	+	0	NA	intron (NM_001345983, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	6812	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
110202	chr19	1725151	1726200	+	0	NA	Intergenic	CpG	-27831	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
122438	chr19	49479421	49479900	+	0	NA	intron (NM_001204502, intron 6 of 8)	AluYf1|SINE|Alu	5074	NM_001204503	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
133036	chr2	112057521	112057780	+	0	NA	intron (NM_001329914, intron 1 of 18)	L2c|LINE|L2	2381	NM_001329914	84910		NM_032824	ENSG00000153214	TMEM87B	-	transmembrane protein 87B	protein-coding
84534	chr16	30528771	30529580	+	0	NA	Intergenic	Intergenic	-2609	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
141379	chr2	240703801	240704000	+	0	NA	Intergenic	Intergenic	12034	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
198269	chr6	99590701	99591780	+	0	NA	Intergenic	CpG	-15593	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
153608	chr22	27886601	27887480	+	0	NA	intron (NM_001284278, intron 7 of 11)	intron (NM_001284278, intron 7 of 11)	32174	NM_001284278	23760		NM_012399	ENSG00000180957	PITPNB	PI-TP-beta|PtdInsTP|VIB1B	phosphatidylinositol transfer protein beta	protein-coding
166242	chr3	112289171	112289330	+	0	NA	intron (NM_183061, intron 1 of 28)	MER90a|LTR|ERV1	4966	NM_183061	285335		NM_183061	ENSG00000172139	SLC9C1	NHE|NHE-10|SLC9A10|sperm-NHE	solute carrier family 9 member C1	protein-coding
48108	chr12	7752571	7752800	+	0	NA	Intergenic	AluY|SINE|Alu	-3144	NM_203503	170482		NM_130441	ENSG00000198178	CLEC4C	BDCA-2|BDCA2|CD303|CLECSF11|CLECSF7|DLEC|HECL|PRO34150	C-type lectin domain family 4 member C	protein-coding
77059	chr15	78878001	78878500	+	0	NA	exon (NM_006791, exon 2 of 12)	exon (NM_006791, exon 2 of 12)	5261	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
94767	chr17	30825821	30826580	+	0	NA	Intergenic	AluJo|SINE|Alu	-1440	NR_073118	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
160305	chr3	27473771	27474130	+	0	NA	intron (NR_135544, intron 1 of 24)	intron (NR_135544, intron 1 of 24)	10434	NR_135543	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
48460	chr12	9751551	9752630	+	0	NA	TTS (NM_001781)	TTS (NM_001781)	8811	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
44231	chr11	96391601	96391800	+	0	NA	exon (NM_003772, exon 1 of 1)	exon (NM_003772, exon 1 of 1)	1687	NM_001261833	8690		NM_003772	ENSG00000183340	JRKL	HHMJG	JRK like	protein-coding
222109	chr8	131901821	131902080	+	0	NA	Intergenic	Intergenic	-2143	NM_001323553	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
129452	chr2	69554851	69555430	+	0	NA	intron (NM_001371577, intron 3 of 14)	intron (NM_001371577, intron 3 of 14)	-34969	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
17757	chr1	159016801	159017200	+	0	NA	intron (NM_001376587, intron 4 of 11)	intron (NM_001376587, intron 4 of 11)	7093	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
162003	chr3	46383421	46383730	+	0	NA	intron (NR_125406, intron 2 of 3)	intron (NR_125406, intron 2 of 3)	13433	NM_001100168	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
226293	chr9	68326571	68326930	+	0	NA	Intergenic	SATR1|Satellite|Satellite	23883	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
194511	chr6	33290951	33291130	+	0	NA	TTS (NM_001265595).2	TTS (NM_001265595).2	795	NR_106892	102465501		NR_106892	ENSG00000284064	MIR6834	hsa-mir-6834	microRNA 6834	ncRNA
221766	chr8	127886971	127887630	+	0	NA	intron (NR_003367, intron 1 of 8)	L1MEb|LINE|L1	61423	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
68918	chr14	91364521	91365150	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	52985	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
48495	chr12	9851301	9851530	+	0	NA	TTS (NM_005127)	TTS (NM_005127)	18444	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
215726	chr8	1761821	1762080	+	0	NA	TTS (NR_134302)	TTS (NR_134302)	1384	NR_134302	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
48801	chr12	11980571	11981950	+	0	NA	Intergenic	Intergenic	-68601	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
30134	chr10	74058101	74058300	+	0	NA	intron (NM_014000, intron 2 of 21)	intron (NM_014000, intron 2 of 21)	60084	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
200582	chr6	136526321	136526800	+	0	NA	promoter-TSS (NM_001198618)	promoter-TSS (NM_001198618)	46	NM_001198618	9053		NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
230228	chr9	127869701	127870330	+	0	NA	promoter-TSS (NR_039819)	promoter-TSS (NR_039819)	-520	NR_039819	100616429		NR_039819	ENSG00000263979	MIR4672	-	microRNA 4672	ncRNA
194836	chr6	34412901	34413200	+	0	NA	intron (NM_001202470, intron 5 of 8)	L1ME1|LINE|L1	13019	NM_001204091	6204		NM_001014	ENSG00000124614	RPS10	DBA9|S10|eS10	ribosomal protein S10	protein-coding
217562	chr8	29402371	29402830	+	0	NA	Intergenic	Intergenic	-51916	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
124365	chr19	58358071	58358430	+	0	NA	intron (NM_001207009, intron 1 of 1)	intron (NM_001207009, intron 1 of 1)	-4376	NR_136527	105372483		NR_136527		ZNF497-AS1	-	ZNF497 antisense RNA 1	ncRNA
106459	chr18	13800921	13801200	+	0	NA	Intergenic	CpG	-23089	NM_005913	4161		NM_005913	ENSG00000176136	MC5R	MC2	melanocortin 5 receptor	protein-coding
127204	chr2	38578751	38579280	+	0	NA	intron (NM_138394, intron 6 of 12)	L3|LINE|CR1	23913	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
236457	chrX	71570821	71571080	+	0	NA	intron (NM_181672, intron 21 of 21)	AluJb|SINE|Alu	-7074	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
117251	chr19	19442921	19443380	+	0	NA	intron (NM_001384516, intron 2 of 12)	intron (NM_001384516, intron 2 of 12)	8087	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
188621	chr5	157206651	157206750	+	0	NA	intron (NM_005546, intron 1 of 16)	L1PREC2|LINE|L1	25860	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
81057	chr16	4322771	4323230	+	0	NA	intron (NM_032575, intron 1 of 6).2	intron (NM_032575, intron 1 of 6).2	5340	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
43429	chr11	77619621	77620000	+	0	NA	intron (NM_001311201, intron 4 of 5)	intron (NM_001311201, intron 4 of 5)	17984	NM_001311200	1207		NM_001293	ENSG00000074201	CLNS1A	CLCI|CLNS1B|ICln	chloride nucleotide-sensitive channel 1A	protein-coding
134915	chr2	150542451	150542630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	29681	NR_110241	101929260		NR_110241	ENSG00000236049	LINC01920	-	long intergenic non-protein coding RNA 1920	ncRNA
162309	chr3	47420201	47420400	+	0	NA	intron (NM_001320044, intron 9 of 19)	intron (NM_001320044, intron 9 of 19)	39279	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
138055	chr2	201450901	201452580	+	0	NA	promoter-TSS (NM_001206864)	promoter-TSS (NM_001206864)	0	NM_018571	55437		NM_018571	ENSG00000082146	STRADB	ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038	STE20 related adaptor beta	protein-coding
28818	chr10	62265771	62266130	+	0	NA	intron (NM_001282941, intron 1 of 4)	intron (NM_001282941, intron 1 of 4)	2894	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
122867	chr19	50491371	50491530	+	0	NA	TTS (NM_175063)	TTS (NM_175063)	-14602	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
47407	chr12	2883051	2883550	+	0	NA	intron (NR_027365, intron 1 of 1)	AluJb|SINE|Alu	6077	NM_001257098	83695		NM_001252499	ENSG00000171792	RHNO1	C12orf32|HKMT1188|RHINO	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding
113535	chr19	10143701	10145050	+	0	NA	intron (NM_001318730, intron 27 of 39)	AluSg|SINE|Alu	-24476	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
220105	chr8	94474471	94476100	+	0	NA	promoter-TSS (NM_001205262)	promoter-TSS (NM_001205262)	-170	NM_012415	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
197715	chr6	86004471	86004800	+	0	NA	Intergenic	L1HS|LINE|L1	-325902	NR_003038	387066		NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG	small nucleolar RNA host gene 5	ncRNA
172707	chr4	2792371	2793300	+	0	NA	promoter-TSS (NM_001122681)	promoter-TSS (NM_001122681)	-250	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
169772	chr3	172660471	172660830	+	0	NA	intron (NM_001146276, intron 1 of 4)	L1PA6|LINE|L1	50417	NM_001146276	57552		NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
73287	chr15	41865001	41866180	+	0	NA	TTS (NR_036195)	TTS (NR_036195)	961	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
131132	chr2	91478751	91479250	+	0	NA	Intergenic	CpG	180949	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
63083	chr13	113187321	113187600	+	0	NA	5' UTR (NM_001353095, exon 8 of 15)	5' UTR (NM_001353095, exon 8 of 15)	-20733	NM_001278513	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
120737	chr19	45373001	45373400	+	0	NA	Intergenic	AluJo|SINE|Alu	-2613	NM_001130867	2068		NM_000400	ENSG00000104884	ERCC2	COFS2|EM9|TFIIH|TTD|TTD1|XPD	ERCC excision repair 2, TFIIH core complex helicase subunit	protein-coding
111429	chr19	3799251	3799350	+	0	NA	intron (NM_002378, intron 1 of 13)	MIRb|SINE|MIR	2499	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
28111	chr10	43400721	43401680	+	0	NA	intron (NM_001098204, intron 1 of 3)	intron (NM_001098204, intron 1 of 3)	-3854	NM_001098207	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
87523	chr16	71893921	71896130	+	0	NA	promoter-TSS (NM_001270979)	promoter-TSS (NM_001270979)	-468	NM_001270979	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
139123	chr2	218988351	218988650	+	0	NA	Intergenic	Intergenic	-3316	NM_017521	54738		NM_017521	ENSG00000163497	FEV	HSRNAFEV|PET-1	FEV transcription factor, ETS family member	protein-coding
36441	chr11	5293951	5294200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7871	NM_033179	79339		NM_033179	ENSG00000183251	OR51B4	HOR5'Beta1	olfactory receptor family 51 subfamily B member 4	protein-coding
125469	chr2	12313571	12313730	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	114520	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
221798	chr8	127976501	127977050	+	0	NA	intron (NR_003367, intron 3 of 8)	MIRb|SINE|MIR	16142	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
4872	chr1	23771151	23771450	+	0	NA	intron (NR_038280, intron 3 of 3)	AluJb|SINE|Alu	6997	NR_038280	100506963		NR_038280	ENSG00000236810	ELOA-AS1	TCEB3-AS1	ELOA antisense RNA 1	ncRNA
86889	chr16	67997201	67997400	+	0	NA	intron (NM_022355, intron 1 of 10)	AluSq2|SINE|Alu	2184	NM_022355	64174		NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
63276	chr13	113962371	113962530	+	0	NA	intron (NM_001365455, intron 6 of 6)	intron (NM_001365455, intron 6 of 6)	11626	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
6719	chr1	29723451	29723780	+	0	NA	Intergenic	Intergenic	313997	NR_110790	101929406		NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
119171	chr19	39411301	39414600	+	0	NA	promoter-TSS (NM_001351694)	promoter-TSS (NM_001351694)	281	NM_022835	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
19762	chr1	182046851	182046950	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	14812	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
100048	chr17	58086051	58086630	+	0	NA	intron (NM_080677, intron 1 of 2)	MER58A|DNA|hAT-Charlie	2921	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
41618	chr11	66420771	66420930	+	0	NA	promoter-TSS (NM_001318804)	promoter-TSS (NM_001318804)	-154	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
12467	chr1	107851551	107851650	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-45623	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
199485	chr6	118639301	118639800	+	0	NA	intron (NM_001178035, intron 2 of 13)	intron (NM_001178035, intron 2 of 13)	12041	NM_206921	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
25063	chr10	3803971	3804800	+	0	NA	Intergenic	Intergenic	-19104	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
145156	chr20	38839201	38839400	+	0	NA	intron (NM_001172735, intron 2 of 9)	MIRc|SINE|MIR	33603	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
228800	chr9	111895321	111895580	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1364	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
141073	chr2	238282501	238282700	+	0	NA	intron (NM_022817, intron 1 of 22)	(GAACAA)n|Simple_repeat|Simple_repeat	6010	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
27343	chr10	30673471	30673630	+	0	NA	Intergenic	Intergenic	-18724	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
149048	chr21	15057221	15057880	+	0	NA	intron (NM_003489, intron 1 of 3)	intron (NM_003489, intron 1 of 3)	7450	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
72248	chr15	30537101	30537530	+	0	NA	intron (NR_102756, intron 1 of 1)	intron (NR_102756, intron 1 of 1)	2850	NR_102756	100996255		NR_102756		LINC02256	-	long intergenic non-protein coding RNA 2256	ncRNA
199618	chr6	119343071	119343700	+	0	NA	intron (NM_005907, intron 2 of 12)	MIR3|SINE|MIR	6376	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
207356	chr7	44080151	44080330	+	0	NA	intron (NR_156112, intron 2 of 10)	MIR|SINE|MIR	2290	NM_001284330	27434		NM_013284	ENSG00000122678	POLM	Pol Mu|Tdt-N	DNA polymerase mu	protein-coding
185055	chr5	115963251	115963350	+	0	NA	exon (NM_173800, exon 1 of 20)	exon (NM_173800, exon 1 of 20)	825	NM_173800	206338		NM_173800	ENSG00000172901	LVRN	APQ|AQPEP|TAQPEP	laeverin	protein-coding
226415	chr9	70484551	70485330	+	0	NA	Intergenic	MIR|SINE|MIR	-70283	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
23518	chr1	229027551	229028080	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	146986	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
32616	chr10	103657801	103658500	+	0	NA	intron (NM_014631, intron 8 of 13)	intron (NM_014631, intron 8 of 13)	20065	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
22707	chr1	224106451	224106950	+	0	NA	Intergenic	LTR41|LTR|ERVL	-7411	NM_015176	23219		NM_015176	ENSG00000143756	FBXO28	CENP-30|DEE100|Fbx28	F-box protein 28	protein-coding
184453	chr5	100395001	100395300	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-6896	NR_027503	100133050		NR_027503		GUSBP19	-	GUSB pseudogene 19	pseudo
70174	chr14	100327751	100328050	+	0	NA	intron (NM_001350877, intron 4 of 5)	MIR|SINE|MIR	4561	NM_001350877	283600		NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDCMP|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
127810	chr2	44617571	44617730	+	0	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	255703	NM_024766	79823		NM_024766	ENSG00000143919	CAMKMT	C2orf34|CLNMT|CaM KMT|Cam|KMT	calmodulin-lysine N-methyltransferase	protein-coding
133584	chr2	121651521	121651780	+	0	NA	TTS (NR_037856)	TTS (NR_037856)	1661	NR_037856	254128		NR_037856	ENSG00000236859	NIFK-AS1	-	NIFK antisense RNA 1	ncRNA
128384	chr2	55038301	55038800	+	0	NA	intron (NM_001321904, intron 2 of 9)	L1ME2|LINE|L1	8776	NM_001321863	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
48286	chr12	8946371	8947050	+	0	NA	intron (NM_002355, intron 1 of 6)	intron (NM_002355, intron 1 of 6)	2935	NM_002355	4074		NM_002355	ENSG00000003056	M6PR	CD-M6PR|CD-MPR|MPR 46|MPR-46|MPR46|SMPR	mannose-6-phosphate receptor, cation dependent	protein-coding
143093	chr20	23162301	23162500	+	0	NA	Intergenic	L2a|LINE|L2	-29764	NR_034149	200261		NM_182535	ENSG00000233746	LINC00656	-	long intergenic non-protein coding RNA 656	ncRNA
54351	chr12	89695851	89696550	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	12638	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
50685	chr12	48862151	48863050	+	0	NA	intron (NM_014470, intron 2 of 4)	intron (NM_014470, intron 2 of 4)	3270	NM_014470	27289		NM_014470	ENSG00000172602	RND1	ARHS|RHO6|RHOS	Rho family GTPase 1	protein-coding
121314	chr19	46751021	46751480	+	0	NA	intron (NM_001039885, intron 3 of 3)	AluJb|SINE|Alu	-4800	NM_013403	29888		NM_013403	ENSG00000090372	STRN4	PPP2R6C|ZIN|zinedin	striatin 4	protein-coding
139770	chr2	230202751	230203780	+	0	NA	intron (NM_080424, intron 8 of 18)	intron (NM_080424, intron 8 of 18)	16719	NM_001378443	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
161130	chr3	38455441	38456280	+	0	NA	intron (NM_001106, intron 1 of 10)	intron (NM_001106, intron 1 of 10)	-1040	NR_028389	100128640		NR_028389	ENSG00000229589	ACVR2B-AS1	-	ACVR2B antisense RNA 1	ncRNA
136573	chr2	177784001	177784800	+	0	NA	intron (NM_001077358, intron 8 of 18)	MER41B|LTR|ERV1	104356	NM_001077196	50940		NM_016953	ENSG00000128655	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
226688	chr9	75101201	75101400	+	0	NA	intron (NM_012383, intron 1 of 9)	intron (NM_012383, intron 1 of 9)	12786	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
203513	chr7	705851	706150	+	0	NA	intron (NM_001164759, intron 2 of 10)	AluSq|SINE|Alu	6524	NM_002735	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
74699	chr15	62392551	62392730	+	0	NA	Intergenic	Intergenic	49611	NR_106733	102464834		NR_106733	ENSG00000275451	MIR6085	hsa-mir-6085	microRNA 6085	ncRNA
213009	chr7	131010351	131011670	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	96020	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
99406	chr17	50023421	50023780	+	0	NA	Intergenic	(TGCA)n|Simple_repeat|Simple_repeat	-28376	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
23382	chr1	228177871	228178430	+	0	NA	3' UTR (NM_001010867, exon 3 of 3)	3' UTR (NM_001010867, exon 3 of 3)	3580	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
57621	chr12	122502221	122502780	+	0	NA	TTS (NM_023012)	TTS (NM_023012)	-1568	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
116521	chr19	18170421	18171050	+	0	NA	TTS (NM_005027)	TTS (NM_005027)	-3078	NM_006332	10437		NM_006332	ENSG00000216490	IFI30	GILT|IFI-30|IP-30|IP30	IFI30 lysosomal thiol reductase	protein-coding
233928	chrX	2262951	2263480	+	0	NA	intron (NM_145177, intron 5 of 6)	MLT1A0|LTR|ERVL-MaLR	237324	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
206020	chr7	26369571	26370080	+	0	NA	intron (NM_001199835, intron 5 of 6)	intron (NM_001199835, intron 5 of 6)	5500	NM_001199838	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
48073	chr12	7134751	7135130	+	0	NA	intron (NM_014718, intron 3 of 17)	intron (NM_014718, intron 3 of 17)	4569	NM_014718	9746		NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
56953	chr12	120498601	120498800	+	0	NA	TTS (NM_001037495)	TTS (NM_001037495)	2587	NM_003746	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
141346	chr2	240595521	240596130	+	0	NA	intron (NM_023085, intron 7 of 9)	intron (NM_023085, intron 7 of 9)	9091	NM_023085	11132		NM_021251	ENSG00000142330	CAPN10	CANP10|NIDDM1	calpain 10	protein-coding
113652	chr19	10363801	10364000	+	0	NA	intron (NM_001385207, intron 9 of 24)	intron (NM_001385207, intron 9 of 24)	16672	NM_001385207	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
67042	chr14	67642951	67643150	+	0	NA	intron (NM_001172, intron 3 of 7)	AluJb|SINE|Alu	23130	NM_001172	384		NM_001172	ENSG00000081181	ARG2	-	arginase 2	protein-coding
66105	chr14	59870151	59870880	+	0	NA	exon (NM_021136, exon 1 of 9)	exon (NM_021136, exon 1 of 9)	261	NM_021136	6252		NM_021136	ENSG00000139970	RTN1	NSP	reticulon 1	protein-coding
28450	chr10	49176951	49177800	+	0	NA	intron (NM_001288741, intron 1 of 4)	intron (NM_001288741, intron 1 of 4)	11016	NM_001353331	170371		NM_001010863	ENSG00000204161	TMEM273	C10orf128	transmembrane protein 273	protein-coding
129920	chr2	73293221	73294130	+	0	NA	promoter-TSS (NM_001965)	promoter-TSS (NM_001965)	-127	NM_001965	1961		NM_001965	ENSG00000135625	EGR4	AT133|NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
186906	chr5	139582751	139583050	+	0	NA	intron (NM_181838, intron 2 of 7)	AluY|SINE|Alu	21561	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
198137	chr6	90463401	90464380	+	0	NA	Intergenic	Intergenic	123182	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
71224	chr14	105166001	105166630	+	0	NA	intron (NM_002226, intron 2 of 25)	intron (NM_002226, intron 2 of 25)	2461	NM_002226	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
128230	chr2	54206721	54206980	+	0	NA	intron (NM_138448, intron 3 of 3)	intron (NM_138448, intron 3 of 3)	49379	NM_001003937	388951		NM_001003937	ENSG00000178021	TSPYL6	-	TSPY like 6	protein-coding
177507	chr4	118265321	118266030	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-13087	NR_034010	100093630		NR_003584	ENSG00000269893	SNHG8	LINC00060|NCRNA00060	small nucleolar RNA host gene 8	ncRNA
192515	chr6	25022151	25022780	+	0	NA	intron (NM_001286446, intron 1 of 13)	L1ME1|LINE|L1	19823	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
150258	chr21	41725571	41725930	+	0	NA	Intergenic	Intergenic	9314	NR_024028	54089		NR_024028	ENSG00000232401	LINC00112	C21orf22|NCRNA00112	long intergenic non-protein coding RNA 112	ncRNA
31414	chr10	95601101	95601400	+	0	NA	Intergenic	Intergenic	-39879	NM_015385	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
59039	chr13	20475521	20476680	+	0	NA	intron (NM_015974, intron 3 of 7)	intron (NM_015974, intron 3 of 7)	-42254	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
156427	chr22	41228171	41228330	+	0	NA	intron (NM_031488, intron 15 of 16)	intron (NM_031488, intron 15 of 16)	-10623	NR_148200	100506544		NR_148200		L3MBTL2-AS1	-	L3MBTL2 antisense RNA 1	ncRNA
223778	chr8	144575421	144575730	+	0	NA	intron (NM_001308207, intron 4 of 11)	Tigger3b|DNA|TcMar-Tigger	30120	NM_025251	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
108362	chr18	68210651	68210950	+	0	NA	Intergenic	Intergenic	-395978	NR_146471	101927430		NR_146471	ENSG00000265555	LINC01903	-	long intergenic non-protein coding RNA 1903	ncRNA
122361	chr19	49344651	49344980	+	0	NA	intron (NM_001256661, intron 10 of 12)	intron (NM_001256661, intron 10 of 12)	9409	NM_001040031	951		NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
105125	chr17	82222801	82223280	+	0	NA	Intergenic	L1MB5|LINE|L1	-5366	NM_001042422	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
3784	chr1	16700141	16702150	+	0	NA	intron (NR_026567, intron 6 of 10)	CpG-526	19012	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
113902	chr19	10688071	10689350	+	0	NA	intron (NM_012218, intron 19 of 19)	intron (NM_012218, intron 19 of 19)	-12729	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
103885	chr17	79791171	79791880	+	0	NA	TTS (NM_020649)	TTS (NM_020649)	5552	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
63756	chr14	21242401	21243500	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluSx4|SINE|Alu	26492	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
67554	chr14	71289501	71289780	+	0	NA	Intergenic	L2b|LINE|L2	-30836	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
72951	chr15	40452301	40452950	+	0	NA	intron (NR_125372, intron 1 of 4)	intron (NR_125372, intron 1 of 4)	11672	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
186656	chr5	138573171	138573830	+	0	NA	intron (NM_004134, intron 3 of 16)	AluSz|SINE|Alu	1901	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
66498	chr14	61699201	61699630	+	0	NA	intron (NM_001243084, intron 1 of 14)	intron (NM_001243084, intron 1 of 14)	1793	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
46915	chr11	134244551	134245300	+	0	NA	intron (NM_052875, intron 4 of 5)	intron (NM_052875, intron 4 of 5)	8427	NM_014174	29087		NM_014174	ENSG00000151500	THYN1	HSPC144|MDS012|MY105|THY28|THY28KD	thymocyte nuclear protein 1	protein-coding
93386	chr17	18260251	18262700	+	0	NA	intron (NM_148886, intron 1 of 3)	intron (NM_148886, intron 1 of 3)	365	NM_148886	125170		NM_139162	ENSG00000177427	MIEF2	COXPD49|D3B|MID49|SMCR7	mitochondrial elongation factor 2	protein-coding
170064	chr3	182878201	182878400	+	0	NA	intron (NM_014616, intron 19 of 29)	intron (NM_014616, intron 19 of 29)	84796	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
165401	chr3	97793451	97794080	+	0	NA	intron (NR_136595, intron 9 of 9)	intron (NR_136595, intron 9 of 9)	-28246	NM_153605	131544		NM_153605	ENSG00000080200	CRYBG3	DKFZp667G2110|vlAKAP	crystallin beta-gamma domain containing 3	protein-coding
29402	chr10	70161151	70161500	+	0	NA	intron (NM_001142648, intron 4 of 7)	intron (NM_001142648, intron 4 of 7)	9189	NM_001142648	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
65362	chr14	50525171	50525530	+	0	NA	intron (NM_198794, intron 2 of 31)	L2c|LINE|L2	7219	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
210832	chr7	100964301	100964880	+	0	NA	intron (NM_005960, intron 5 of 11)	intron (NM_005960, intron 5 of 11)	-5033	NM_001164462	10071		NM_001164462	ENSG00000205277	MUC12	MUC-11|MUC-12|MUC11	mucin 12, cell surface associated	protein-coding
191101	chr6	3932871	3933300	+	0	NA	Intergenic	Intergenic	83712	NM_012135	26240		NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
190519	chr5	180568971	180569130	+	0	NA	intron (NR_163437, intron 10 of 12)	intron (NR_163437, intron 10 of 12)	22449	NM_052863	92304		NM_052863	ENSG00000161055	SCGB3A1	HIN-1|HIN1|LU105|PnSP-2|UGRP2	secretoglobin family 3A member 1	protein-coding
17277	chr1	156423451	156424050	+	0	NA	intron (NR_168071, intron 2 of 4)	intron (NR_168071, intron 2 of 4)	-1981	NR_135268	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
38502	chr11	45880971	45881400	+	0	NA	3' UTR (NM_001127457, exon 12 of 12)	3' UTR (NM_001127457, exon 12 of 12)	-4466	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
228214	chr9	97853811	97855500	+	0	NA	exon (NM_004473, exon 1 of 1)	exon (NM_004473, exon 1 of 1)	1429	NM_004473	2304		NM_004473	ENSG00000178919	FOXE1	BAMLAZ|FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2	forkhead box E1	protein-coding
176118	chr4	83080401	83080600	+	0	NA	Intergenic	Ricksha_c|DNA|MULE-MuDR	29389	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
84115	chr16	29666111	29667680	+	0	NA	3' UTR (NM_001030288, exon 2 of 2)	3' UTR (NM_001030288, exon 2 of 2)	3648	NM_003123	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
4522	chr1	21815771	21815930	+	0	NA	intron (NM_001013693, intron 2 of 4)	intron (NM_001013693, intron 2 of 4)	3585	NM_001013693	401944		NM_001013693	ENSG00000187942	LDLRAD2	-	low density lipoprotein receptor class A domain containing 2	protein-coding
83204	chr16	23556121	23556380	+	0	NA	intron (NM_001083614, intron 1 of 8)	intron (NM_001083614, intron 1 of 8)	1100	NM_001083614	124454		NM_001083614	ENSG00000103356	EARS2	COXPD12|MSE1|gluRS|mtGlnRS|mtGluRS	glutamyl-tRNA synthetase 2, mitochondrial	protein-coding
80799	chr16	3304821	3306150	+	0	NA	promoter-TSS (NM_033208)	promoter-TSS (NM_033208)	1	NM_001352498	7627		NM_153028	ENSG00000162086	ZNF75A	-	zinc finger protein 75A	protein-coding
199992	chr6	128240051	128240550	+	0	NA	intron (NM_001291981, intron 4 of 32).2	intron (NM_001291981, intron 4 of 32).2	212435	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
132911	chr2	111415351	111415750	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	79611	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
46727	chr11	128904471	128904650	+	0	NA	non-coding (NR_169216, exon 2 of 4)	non-coding (NR_169216, exon 2 of 4)	1149	NR_169216	219833		NM_145013	ENSG00000174370	KCNJ5-AS1	C11orf45	KCNJ5 antisense RNA 1	ncRNA
25470	chr10	6713801	6714000	+	0	NA	Intergenic	Intergenic	-23482	NR_138480	108570035		NR_138480		LINP1	PARROT	lncRNA in non-homologous end joining pathway 1	ncRNA
90310	chr17	1104401	1104800	+	0	NA	intron (NM_001322840, intron 2 of 22).2	intron (NM_001322840, intron 2 of 22).2	4502	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
6444	chr1	28241921	28242180	+	0	NA	Intergenic	Intergenic	5926	NM_016311	93974		NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
212762	chr7	129945701	129946580	+	0	NA	intron (NM_001202498, intron 1 of 6)	AluY|SINE|Alu	6820	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
115774	chr19	16350571	16350730	+	0	NA	Intergenic	AluJr|SINE|Alu	25824	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
39550	chr11	61117921	61118830	+	0	NA	exon (NM_014207, exon 3 of 11)	exon (NM_014207, exon 3 of 11)	15886	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
177886	chr4	128818901	128819550	+	0	NA	intron (NM_001287443, intron 1 of 10)	intron (NM_001287443, intron 1 of 10)	7381	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
221284	chr8	122910371	122911800	+	0	NA	intron (NM_001362797, intron 3 of 4)	intron (NM_001362797, intron 3 of 4)	114687	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
51182	chr12	50224371	50224930	+	0	NA	intron (NM_001113546, intron 3 of 10)	L1ME4a|LINE|L1	-1992	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
97228	chr17	42821821	42822080	+	0	NA	intron (NM_001313998, intron 2 of 11)	AluSc|SINE|Alu	1929	NM_001313999	8678		NM_003766	ENSG00000126581	BECN1	ATG6|VPS30|beclin1	beclin 1	protein-coding
71712	chr15	20344871	20345350	+	0	NA	Intergenic	Intergenic	62366	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
99355	chr17	49889601	49889850	+	0	NA	Intergenic	Intergenic	-41708	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
52586	chr12	56180371	56180730	+	0	NA	intron (NM_003075, intron 11 of 27)	AluSq2|SINE|Alu	8933	NM_001130420	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
214980	chr7	152128221	152128480	+	0	NA	Intergenic	Intergenic	53313	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
143399	chr20	29325171	29325530	+	0	NA	Intergenic	LSAU|Satellite|Satellite	91611	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
45053	chr11	117049971	117050480	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSq2|SINE|Alu	48203	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
57570	chr12	122244301	122245950	+	0	NA	intron (NM_001351018, intron 6 of 12)	Charlie9|DNA|hAT-Charlie	-17669	NM_019887	56616		NM_019887	ENSG00000184047	DIABLO	DFNA64|SMAC	diablo IAP-binding mitochondrial protein	protein-coding
30515	chr10	79344721	79345230	+	0	NA	Intergenic	Intergenic	-2494	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
171236	chr3	195782471	195782630	+	0	NA	exon (NM_018406, exon 2 of 25)	exon (NM_018406, exon 2 of 25)	29379	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
208963	chr7	74191251	74191550	+	0	NA	TTS (NR_030321)	TTS (NR_030321)	202	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
124607	chr2	956151	956250	+	0	NA	intron (NM_018968, intron 1 of 16)	(CTGCCC)n|Simple_repeat|Simple_repeat	-4808	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
69785	chr14	99183721	99184300	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	88187	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
227834	chr9	93460821	93461280	+	0	NA	intron (NM_001286723, intron 1 of 9)	intron (NM_001286723, intron 1 of 9)	-7449	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
195430	chr6	36957271	36957430	+	0	NA	intron (NM_153370, intron 1 of 6)	L2c|LINE|L2	2612	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
121087	chr19	45893171	45893330	+	0	NA	intron (NM_001012643, intron 2 of 2)	AluSx|SINE|Alu	-7109	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
131964	chr2	100001051	100001350	+	0	NA	intron (NM_001025108, intron 6 of 23)	intron (NM_001025108, intron 6 of 23)	104383	NM_001025108	3899		NM_002285	ENSG00000144218	AFF3	KINS|LAF4|MLLT2-like	ALF transcription elongation factor 3	protein-coding
101551	chr17	68015721	68016280	+	0	NA	Intergenic	AluSx4|SINE|Alu	-19531	NM_001382359	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
54896	chr12	95942401	95943670	+	0	NA	promoter-TSS (NM_182496)	promoter-TSS (NM_182496)	-296	NM_152435	144193		NM_152435	ENSG00000139344	AMDHD1	HMFT1272	amidohydrolase domain containing 1	protein-coding
211050	chr7	102457651	102457950	+	0	NA	TTS (NM_001126340)	TTS (NM_001126340)	7063	NM_017621	54784		NM_017621	ENSG00000160993	ALKBH4	ABH4	alkB homolog 4, lysine demethylase	protein-coding
1157	chr1	2202271	2202730	+	0	NA	intron (NM_001282670, intron 3 of 7)	AluJb|SINE|Alu	5233	NM_001146310	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
43501	chr11	78564171	78565000	+	0	NA	intron (NM_024678, intron 4 of 13)	intron (NM_024678, intron 4 of 13)	10279	NM_024678	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
160667	chr3	32019101	32019350	+	0	NA	Intergenic	Intergenic	-37375	NM_001174060	114884		NM_017784	ENSG00000144645	OSBPL10	ORP10|OSBP9	oxysterol binding protein like 10	protein-coding
201262	chr6	144153651	144154700	+	0	NA	intron (NM_003764, intron 1 of 1)	MIR|SINE|MIR	3658	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
115673	chr19	16168371	16169130	+	0	NA	intron (NM_001300922, intron 1 of 3)	MLT1K|LTR|ERVL-MaLR	4775	NM_054113	117286		NM_054113	ENSG00000141977	CIB3	KIP3	calcium and integrin binding family member 3	protein-coding
213303	chr7	135151351	135151830	+	0	NA	intron (NM_018295, intron 1 of 1)	intron (NM_018295, intron 1 of 1)	3518	NM_018295	55281		NM_018295	ENSG00000146859	TMEM140	-	transmembrane protein 140	protein-coding
124957	chr2	8675071	8675430	+	0	NA	intron (NR_110154, intron 1 of 3)	MER1B|DNA|hAT-Charlie	6611	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
128017	chr2	47165071	47165630	+	0	NA	intron (NM_001743, intron 2 of 5)	intron (NM_001743, intron 2 of 5)	8857	NM_001305626	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
135621	chr2	168183651	168183950	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	63795	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
136240	chr2	174606401	174607150	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-8544	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
221330	chr8	123095871	123096430	+	0	NA	intron (NM_145647, intron 5 of 21)	L2a|LINE|L2	22901	NM_001363149	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
175975	chr4	81490501	81491130	+	0	NA	Intergenic	L2c|LINE|L2	-18908	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
55015	chr12	96375051	96375930	+	0	NA	intron (NM_002595, intron 1 of 16)	L2|LINE|L2	24949	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
198028	chr6	90149401	90149800	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	147243	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
125745	chr2	20670751	20670850	+	0	NA	exon (NM_182828, exon 2 of 2)	exon (NM_182828, exon 2 of 2)	3656	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
22219	chr1	212514801	212515330	+	0	NA	Intergenic	CpG	-30629	NR_125985	101929565		NR_125985	ENSG00000228067	LINC01740	-	long intergenic non-protein coding RNA 1740	ncRNA
112189	chr19	5670771	5671750	+	0	NA	Intergenic	AluY|SINE|Alu	8978	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
196744	chr6	45398351	45398650	+	0	NA	intron (NM_001024630, intron 2 of 8)	intron (NM_001024630, intron 2 of 8)	-20566	NM_181356	8464		NM_003599	ENSG00000196284	SUPT3H	SPT3|SPT3L	SPT3 homolog, SAGA and STAGA complex component	protein-coding
87202	chr16	69435971	69436550	+	0	NA	intron (NM_030579, intron 1 of 4)	L2b|LINE|L2	11641	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
156652	chr22	41634101	41634780	+	0	NA	intron (NM_001288977, intron 3 of 12)	AluJb|SINE|Alu	13145	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
91080	chr17	3098621	3098700	+	0	NA	Intergenic	L1PA10|LINE|L1	-5664	NM_002548	4991		NM_002548	ENSG00000184166	OR1D2	OLFR1|OR17-4	olfactory receptor family 1 subfamily D member 2	protein-coding
149067	chr21	15615071	15615230	+	0	NA	Intergenic	Intergenic	-114784	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
236400	chrX	71145821	71146780	+	0	NA	intron (NM_001321276, intron 1 of 6)	intron (NM_001321276, intron 1 of 6)	1459	NM_001321276	54413		NM_018977	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
210711	chr7	100589501	100589700	+	0	NA	promoter-TSS (NM_001163499)	promoter-TSS (NM_001163499)	-13	NM_001163499	26261		NM_012172	ENSG00000106336	FBXO24	FBX24	F-box protein 24	protein-coding
28617	chr10	58291521	58291800	+	0	NA	Intergenic	Intergenic	22498	NM_018464	55847		NM_018464	ENSG00000122873	CISD1	C10orf70|MDS029|ZCD1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding
38706	chr11	46642601	46643380	+	0	NA	intron (NM_001346351, intron 3 of 17)	MER101B|LTR|ERV1	25437	NM_001346311	9776		NM_014741	ENSG00000175224	ATG13	KIAA0652|PARATARG8	autophagy related 13	protein-coding
197154	chr6	59558621	59558880	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1597304	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
148406	chr20	63943151	63944250	+	0	NA	promoter-TSS (NR_030377)	promoter-TSS (NR_030377)	-974	NR_030377	693232		NR_030377	ENSG00000207554	MIR647	MIRN647|hsa-mir-647	microRNA 647	ncRNA
130962	chr2	87531701	87532500	+	0	NA	Intergenic	Intergenic	62150	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
35723	chr11	1986971	1987330	+	0	NA	intron (NR_024471, intron 1 of 3)	intron (NR_024471, intron 1 of 3)	2770	NR_024471	100133545		NR_024471	ENSG00000226416	MRPL23-AS1	TP53LC10	MRPL23 antisense RNA 1	ncRNA
173166	chr4	6693551	6693900	+	0	NA	promoter-TSS (NM_005980)	promoter-TSS (NM_005980)	-153	NM_005980	6286		NM_005980	ENSG00000163993	S100P	MIG9	S100 calcium binding protein P	protein-coding
137805	chr2	199954971	199956450	+	0	NA	promoter-TSS (NR_109905)	promoter-TSS (NR_109905)	-219	NM_001039693	129450		NM_152382	ENSG00000162971	TYW5	C2orf60|hTYW5	tRNA-yW synthesizing protein 5	protein-coding
52991	chr12	57502521	57503000	+	0	NA	intron (NM_004990, intron 10 of 20)	AluSg|SINE|Alu	-9928	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
113427	chr19	9791301	9792200	+	0	NA	intron (NR_148545, intron 1 of 1)	CpG	1430	NR_148545	100505555		NR_148545	ENSG00000196605	LOC100505555	-	uncharacterized LOC100505555	ncRNA
41034	chr11	65449871	65450030	+	0	NA	Intergenic	AluY|SINE|Alu	-5336	NR_160548	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
156902	chr22	42207951	42208780	+	0	NA	intron (NM_005650, intron 2 of 5)	AluJo|SINE|Alu	-61388	NR_036498	388906		NR_036498		OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
203132	chr6	166935401	166935800	+	0	NA	intron (NM_003730, intron 6 of 8)	intron (NM_003730, intron 6 of 8)	20950	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
59487	chr13	26481301	26481500	+	0	NA	Intergenic	Intergenic	-76283	NM_006646	10810		NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	WASP family member 3	protein-coding
200264	chr6	132514071	132514330	+	0	NA	promoter-TSS (NM_001326579)	promoter-TSS (NM_001326579)	-728	NM_001326579	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
217284	chr8	27360101	27360830	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	34901	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
212566	chr7	128888421	128889300	+	0	NA	intron (NM_001366122, intron 22 of 39)	intron (NM_001366122, intron 22 of 39)	21849	NM_001366122	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
185583	chr5	131392371	131393000	+	0	NA	3' UTR (NM_001375635, exon 5 of 5)	3' UTR (NM_001375635, exon 5 of 5)	128632	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
194446	chr6	33168121	33168750	+	0	NA	intron (NM_080680, intron 54 of 65).6	intron (NM_080680, intron 54 of 65).6	24032	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
76993	chr15	78302551	78302850	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	-3091	NM_001303247	80349		NM_025234	ENSG00000140395	SKIC8	REC14|SKI8|WDR61	SKI8 subunit of superkiller complex	protein-coding
188508	chr5	154939701	154939900	+	0	NA	Intergenic	Intergenic	-1273	NM_014180	29093		NM_014180	ENSG00000082515	MRPL22	HSPC158|L22mt|MRP-L22|MRP-L25|RPML25|uL22m	mitochondrial ribosomal protein L22	protein-coding
61662	chr13	73945971	73946350	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	187769	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
76822	chr15	77160551	77161080	+	0	NA	intron (NM_024776, intron 5 of 7)	intron (NM_024776, intron 5 of 7)	64589	NR_026813	81698		NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	ncRNA
84476	chr16	30475991	30476500	+	0	NA	intron (NM_001114380, intron 4 of 28)	AluY|SINE|Alu	3503	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
81441	chr16	8866901	8867800	+	0	NA	promoter-TSS (NM_001278264)	promoter-TSS (NM_001278264)	78	NM_001278264	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
85449	chr16	50602271	50602950	+	0	NA	intron (NM_033119, intron 3 of 9)	L1ME3G|LINE|L1	54214	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
143520	chr20	31545501	31546330	+	0	NA	intron (NM_178580, intron 4 of 12)	AluSz6|SINE|Alu	27348	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
211834	chr7	108504901	108505100	+	0	NA	intron (NM_001256010, intron 3 of 9)	AluSp|SINE|Alu	21135	NM_001256007	50640		NM_015723	ENSG00000135241	PNPLA8	IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma	patatin like phospholipase domain containing 8	protein-coding
223495	chr8	144074001	144075250	+	0	NA	Intergenic	AluJr|SINE|Alu	-4047	NM_019037	54512		NM_019037	ENSG00000178896	EXOSC4	RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A	exosome component 4	protein-coding
100067	chr17	58176371	58176530	+	0	NA	Intergenic	Intergenic	6794	NM_001004707	124538		NM_001004707	ENSG00000255713	OR4D2	BC2009|OR17-24	olfactory receptor family 4 subfamily D member 2	protein-coding
230069	chr9	127443851	127444150	+	0	NA	intron (NM_001322260, intron 5 of 5)	intron (NM_001322260, intron 5 of 5)	4637	NR_002449	26783		NR_002449	ENSG00000201302	SNORA65	RNU65|U65	small nucleolar RNA, H/ACA box 65	snoRNA
226326	chr9	69054151	69054480	+	0	NA	intron (NM_181425, intron 3 of 4)	intron (NM_181425, intron 3 of 4)	18563	NM_181425	2395		NM_000144	ENSG00000165060	FXN	CyaY|FA|FARR|FRDA|X25	frataxin	protein-coding
46630	chr11	128632151	128632630	+	0	NA	Intergenic	Intergenic	-44832	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
117087	chr19	19137971	19138750	+	0	NA	intron (NM_017814, intron 1 of 11)	intron (NM_017814, intron 1 of 11)	118	NM_017814	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
52782	chr12	56692851	56693150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4592	NM_001282604	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
146013	chr20	46687621	46687880	+	0	NA	intron (NM_033550, intron 1 of 1)	AluSz|SINE|Alu	1694	NM_033550	112858		NM_033550	ENSG00000172315	TP53RK	BUD32|C20orf64|GAMOS4|Nori-2|Nori-2p|PRPK|TPRKB|dJ101A2	TP53 regulating kinase	protein-coding
209461	chr7	76484351	76484650	+	0	NA	intron (NM_001102595, intron 3 of 9)	intron (NM_001102595, intron 3 of 9)	3990	NM_001102596	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
13975	chr1	120556121	120556380	+	0	NA	intron (NR_144516, intron 8 of 43)	intron (NR_144516, intron 8 of 43)	-2435	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
72112	chr15	28945101	28945300	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	11196	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
54659	chr12	93363851	93364450	+	0	NA	intron (NR_040096, intron 1 of 4)	intron (NR_040096, intron 1 of 4)	13586	NR_040096	643339		NR_040096		LOC643339	-	uncharacterized LOC643339	ncRNA
196643	chr6	44290551	44291280	+	0	NA	intron (NM_182539, intron 1 of 4)	intron (NM_182539, intron 1 of 4)	6783	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
71516	chr14	106130271	106130500	+	0	NA	Intergenic	Intergenic	-157289	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
35881	chr11	2396551	2396650	+	0	NA	intron (NM_004356, intron 6 of 7)	CpG	-4150	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
41817	chr11	67022921	67023730	+	0	NA	5' UTR (NM_001318775, exon 1 of 7)	5' UTR (NM_001318775, exon 1 of 7)	191	NM_177963	91683		NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
31889	chr10	100277251	100278050	+	0	NA	intron (NM_173809, intron 4 of 4)	SVA_D|Retroposon|SVA	8714	NM_001001342	282991		NM_173809	ENSG00000196072	BLOC1S2	BLOS2|BORCS2|CEAP|CEAP11	biogenesis of lysosomal organelles complex 1 subunit 2	protein-coding
176220	chr4	84499301	84499600	+	0	NA	promoter-TSS (NM_006168)	promoter-TSS (NM_006168)	-158	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
169549	chr3	170181001	170182430	+	0	NA	promoter-TSS (NM_024947)	promoter-TSS (NM_024947)	18	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
96684	chr17	41284671	41284830	+	0	NA	Intergenic	Intergenic	9052	NM_001277332	100505724		NM_001277332	ENSG00000180386	KRTAP9-7	KAP9.7|KRTAP9L1	keratin associated protein 9-7	protein-coding
74391	chr15	58920121	58920380	+	0	NA	intron (NR_135043, intron 1 of 18)	AluSz6|SINE|Alu	13429	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
206593	chr7	35727451	35727980	+	0	NA	Intergenic	Intergenic	11278	NR_108082	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
220913	chr8	106763051	106763530	+	0	NA	intron (NM_139166, intron 1 of 1)	intron (NM_139166, intron 1 of 1)	6954	NM_139166	137735		NM_139166	ENSG00000174429	ABRA	STARS	actin binding Rho activating protein	protein-coding
217330	chr8	27500121	27500580	+	0	NA	intron (NM_001256483, intron 1 of 17)	MSTA|LTR|ERVL-MaLR	9207	NM_001256482	2053		NM_001979	ENSG00000120915	EPHX2	ABHD20|CEH|SEH	epoxide hydrolase 2	protein-coding
36057	chr11	2948151	2948450	+	0	NA	intron (NM_001369382, intron 15 of 15).2	intron (NM_001369382, intron 15 of 15).2	15593	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
137661	chr2	197432701	197433200	+	0	NA	intron (NM_001005526, intron 1 of 4)	intron (NM_001005526, intron 1 of 4)	2078	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
175641	chr4	76378001	76378300	+	0	NA	intron (NM_001042784, intron 8 of 23)	intron (NM_001042784, intron 8 of 23)	29155	NM_001042784	339965		NM_178555	ENSG00000163749	CCDC158	-	coiled-coil domain containing 158	protein-coding
209790	chr7	87600341	87601050	+	0	NA	intron (NM_001348946, intron 1 of 27)	intron (NM_001348946, intron 1 of 27)	189	NM_001348946	5243		NM_000927	ENSG00000085563	ABCB1	ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1|p-170	ATP binding cassette subfamily B member 1	protein-coding
53307	chr12	64569201	64569400	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-41195	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
122848	chr19	50472801	50473030	+	0	NA	intron (NM_001308429, intron 3 of 4)	AluJr|SINE|Alu	-3592	NM_206538	284361		NM_175063	ENSG00000161671	EMC10	C19orf63|HSM1|HSS1|NEDDFAS	ER membrane protein complex subunit 10	protein-coding
107504	chr18	47926201	47926600	+	0	NA	intron (NM_001135937, intron 1 of 9)	intron (NM_001135937, intron 1 of 9)	4259	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
227050	chr9	83973871	83974250	+	0	NA	intron (NM_031263, intron 7 of 16)	intron (NM_031263, intron 7 of 16)	-4203	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
35188	chr11	791571	792400	+	0	NA	exon (NM_001191061, exon 10 of 10)	exon (NM_001191061, exon 10 of 10)	-1895	NM_016564	51286		NM_016564	ENSG00000184524	CEND1	BM88	cell cycle exit and neuronal differentiation 1	protein-coding
134103	chr2	132268051	132268690	+	0	NA	Intergenic	Intergenic	-10337	NR_152415	554226		NM_001024655	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B like	protein-coding
12294	chr1	100835071	100835450	+	0	NA	Intergenic	Intergenic	59582	NM_001033025	2135		NM_001439	ENSG00000162694	EXTL2	EXTR2	exostosin like glycosyltransferase 2	protein-coding
153521	chr22	26551071	26551430	+	0	NA	intron (NM_001362923, intron 1 of 7)	AluSz6|SINE|Alu	4073	NR_031615	100313914		NR_031615	ENSG00000221760	MIR548J	MIRN548J|hsa-mir-548j	microRNA 548j	ncRNA
220282	chr8	97868971	97869550	+	0	NA	5' UTR (NM_002380, exon 1 of 19)	5' UTR (NM_002380, exon 1 of 19)	196	NM_001317748	4147		NM_002380	ENSG00000132561	MATN2	-	matrilin 2	protein-coding
78849	chr15	100229201	100230000	+	0	NA	intron (NM_139057, intron 7 of 21)	intron (NM_139057, intron 7 of 21)	112375	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
57329	chr12	121691951	121692280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-19471	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
155684	chr22	39067801	39068000	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-9105	NM_001349437	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
143377	chr20	27407551	27407730	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1195025	NR_132315	100289097		NR_132315	ENSG00000282826	FRG1CP	-	FSHD region gene 1 family member C, pseudogene	pseudo
189011	chr5	168576901	168577430	+	0	NA	intron (NM_024594, intron 1 of 6)	AluSg|SINE|Alu	2203	NM_024594	79646		NM_024594	ENSG00000120137	PANK3	-	pantothenate kinase 3	protein-coding
1992	chr1	6657071	6657230	+	0	NA	intron (NM_018198, intron 4 of 15)	MLT1H1|LTR|ERVL-MaLR	32000	NM_001195752	90326		NM_138350	ENSG00000041988	THAP3	-	THAP domain containing 3	protein-coding
146319	chr20	49218071	49218300	+	0	NA	intron (NM_001319135, intron 1 of 14)	intron (NM_001319135, intron 1 of 14)	1110	NM_001319135	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
228857	chr9	112322851	112322950	+	0	NA	intron (NM_001375918, intron 1 of 13)	LTR45B|LTR|ERV1	10126	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
232065	chr9	133473771	133475280	+	0	NA	intron (NM_017585, intron 6 of 9)	MIRc|SINE|MIR	4574	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
201036	chr6	142030221	142030480	+	0	NA	Intergenic	MLT2A2|LTR|ERVL	-102809	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
48962	chr12	12890551	12891700	+	0	NA	promoter-TSS (NM_003979)	promoter-TSS (NM_003979)	-437	NM_003979	9052		NM_003979	ENSG00000013588	GPRC5A	GPCR5A|PEIG-1|RAI3|RAIG1|TIG1	G protein-coupled receptor class C group 5 member A	protein-coding
44557	chr11	108198651	108199200	+	0	NA	intron (NM_001321307, intron 1 of 17)	LTR27E|LTR|ERV1	23713	NM_001321307	4863		NM_002519	ENSG00000149308	NPAT	E14|E14/NPAT|p220	nuclear protein, coactivator of histone transcription	protein-coding
166126	chr3	111319651	111319770	+	0	NA	Intergenic	L1PA15|LINE|L1	-222487	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
74856	chr15	63530901	63531100	+	0	NA	intron (NR_046341, intron 2 of 15)	intron (NR_046341, intron 2 of 15)	26407	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
21107	chr1	203514221	203514480	+	0	NA	Intergenic	Intergenic	20197	NM_014359	26254		NM_014359	ENSG00000188770	OPTC	OPT	opticin	protein-coding
183721	chr5	81006851	81008600	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-46818	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
230363	chr9	128064471	128064630	+	0	NA	intron (NM_197956, intron 1 of 1)	MIRb|SINE|MIR	2770	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
151890	chr22	18890651	18891060	+	0	NA	intron (NR_136571, intron 1 of 11)	HSATI|Satellite|Satellite	3576	NR_136571	100996432		NR_136571		FAM230F	LINC01663	family with sequence similarity 230 member F	ncRNA
111810	chr19	4470951	4473050	+	0	NA	promoter-TSS (NM_001001520)	promoter-TSS (NM_001001520)	-297	NM_001001520	84717		NM_032631	ENSG00000167674	HDGFL2	HDGF-2|HDGF2|HDGFRP2|HRP-2|HRP2	HDGF like 2	protein-coding
190471	chr5	180112301	180112900	+	0	NA	intron (NM_175062, intron 11 of 13)	MIRc|SINE|MIR	-40841	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
27384	chr10	31090951	31091400	+	0	NA	Intergenic	L2b|LINE|L2	-59238	NM_001143766	220929		NM_182755	ENSG00000183621	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
141891	chr20	835201	836150	+	0	NA	promoter-TSS (NM_207121)	promoter-TSS (NM_207121)	-378	NM_207121	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
104863	chr17	81851271	81851730	+	0	NA	intron (NM_000918, intron 4 of 10)	intron (NM_000918, intron 4 of 10)	9035	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
157394	chr22	44742201	44742400	+	0	NA	intron (NM_181334, intron 4 of 14)	L1M3|LINE|L1	-10258	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
117314	chr19	19505971	19506330	+	0	NA	non-coding (NR_169268, exon 12 of 12)	non-coding (NR_169268, exon 12 of 12)	9398	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
58646	chr12	132515071	132515500	+	0	NA	intron (NM_001382740, intron 2 of 11)	L2|LINE|L2	9879	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171062	chr3	195416971	195417200	+	0	NA	intron (NM_012287, intron 1 of 22)	(T)n|Simple_repeat|Simple_repeat	25935	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
118880	chr19	38675421	38675950	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	28036	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
40245	chr11	63635871	63636430	+	0	NA	intron (NM_015459, intron 9 of 12)	intron (NM_015459, intron 9 of 12)	-21681	NM_001128203	11145		NM_007069	ENSG00000176485	PLAAT3	AdPLA|FPLD9|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3	phospholipase A and acyltransferase 3	protein-coding
88994	chr16	87948771	87948930	+	0	NA	promoter-TSS (NM_001384936)	promoter-TSS (NM_001384936)	-388	NM_001384918	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
110185	chr19	1671951	1673130	+	0	NA	Intergenic	CpG	-19925	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
60190	chr13	40370551	40370850	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	110306	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
107165	chr18	35355051	35355500	+	0	NA	Intergenic	L1MD2|LINE|L1	-10855	NM_001308123	7572		NM_006965	ENSG00000172466	ZNF24	KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191	zinc finger protein 24	protein-coding
66733	chr14	64498121	64498880	+	0	NA	promoter-TSS (NM_001354687)	promoter-TSS (NM_001354687)	-508	NM_001354687	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
173198	chr4	6787821	6788480	+	0	NA	intron (NM_001100590, intron 1 of 8)	AluJb|SINE|Alu	5418	NM_001100590	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
93718	chr17	19509671	19510750	+	0	NA	Intergenic	AluSq|SINE|Alu	-23644	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
158708	chr3	8301921	8302200	+	0	NA	intron (NR_033378, intron 3 of 3)	L3|LINE|CR1	199598	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
92507	chr17	8889971	8890130	+	0	NA	exon (NM_014308, exon 8 of 19)	exon (NM_014308, exon 8 of 19)	-22373	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
63044	chr13	113004471	113004630	+	0	NA	intron (NM_001320815, intron 1 of 30)	intron (NM_001320815, intron 1 of 30)	2836	NM_001320815	23263		NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
16239	chr1	153951671	153952030	+	0	NA	intron (NM_181715, intron 10 of 13)	intron (NM_181715, intron 10 of 13)	-5132	NM_014856	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
6913	chr1	31626071	31626630	+	0	NA	intron (NM_001525, intron 8 of 8)	MIR1_Amn|SINE|MIR	8661	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
155783	chr22	39254801	39255500	+	0	NA	Intergenic	Intergenic	-10168	NM_002608	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
199274	chr6	111865871	111867030	+	0	NA	intron (NM_002037, intron 1 of 13)	AluSx|SINE|Alu	6621	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
53936	chr12	71760971	71761530	+	0	NA	intron (NM_014999, intron 1 of 6)	MIRc|SINE|MIR	6387	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
212598	chr7	129056751	129056950	+	0	NA	non-coding (NR_002187, exon 1 of 1)	non-coding (NR_002187, exon 1 of 1)	1627	NR_002187	286016		NM_203419	ENSG00000293205	TPI1P2	-	triosephosphate isomerase 1 pseudogene 2	pseudo
60165	chr13	40147921	40148400	+	0	NA	Intergenic	Intergenic	-33649	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
120312	chr19	43500351	43500650	+	0	NA	intron (NM_198850, intron 4 of 15)	L1MC5a|LINE|L1	4333	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
163260	chr3	50293651	50294100	+	0	NA	intron (NM_001200031, intron 2 of 3)	AluJr|SINE|Alu	-1446	NM_006764	7866		NM_006764	ENSG00000214706	IFRD2	IFNRP|SKMc15|SM15	interferon related developmental regulator 2	protein-coding
7503	chr1	33347751	33348050	+	0	NA	intron (NM_198040, intron 9 of 14)	intron (NM_198040, intron 9 of 14)	1999	NM_004427	1912		NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2	protein-coding
63552	chr14	20335171	20335400	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-1973	NM_182852	57820		NM_021178	ENSG00000100814	CCNB1IP1	C14orf18|HEI10	cyclin B1 interacting protein 1	protein-coding
16988	chr1	155977651	155979070	+	0	NA	promoter-TSS (NM_001350111)	promoter-TSS (NM_001350111)	-185	NM_004723	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
169988	chr3	179603371	179603530	+	0	NA	intron (NM_020409, intron 1 of 6)	AluJb|SINE|Alu	1188	NM_020409	57129		NM_020409	ENSG00000136522	MRPL47	CGI-204|L47mt|MRP-L47|NCM1|uL29m	mitochondrial ribosomal protein L47	protein-coding
33961	chr10	124642101	124642780	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-61588	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
172750	chr4	2846821	2847080	+	0	NA	intron (NM_001286645, intron 1 of 17)	AluY|SINE|Alu	2800	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
129627	chr2	70128801	70129000	+	0	NA	Intergenic	AluY|SINE|Alu	-3584	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
85813	chr16	56981971	56982130	+	0	NA	intron (NM_000078, intron 13 of 15)	intron (NM_000078, intron 13 of 15)	-7507	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
160648	chr3	31571071	31571430	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	38325	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
169576	chr3	170418621	170419630	+	0	NA	exon (NM_005602, exon 1 of 3)	exon (NM_005602, exon 1 of 3)	257	NM_005602	5010		NM_005602	ENSG00000013297	CLDN11	HLD22|OSP|OTM	claudin 11	protein-coding
89642	chr16	89336871	89337030	+	0	NA	intron (NR_045839, intron 2 of 9)	AluJb|SINE|Alu	16498	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
2661	chr1	10474471	10475700	+	0	NA	intron (NM_004565, intron 1 of 8)	CpG	135	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
35206	chr11	812401	812600	+	0	NA	TTS (NR_002585)	TTS (NR_002585)	819	NR_002585	619565		NR_002585	ENSG00000199785	SNORA52	ACA52	small nucleolar RNA, H/ACA box 52	snoRNA
236622	chrX	74546001	74546530	+	0	NA	Intergenic	Intergenic	68359	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
171178	chr3	195668271	195668850	+	0	NA	non-coding (NR_003265, exon 7 of 15)	non-coding (NR_003265, exon 7 of 15)	10521	NR_003265	727956		NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	SDHA pseudogene 2	pseudo
74021	chr15	52177501	52178050	+	0	NA	intron (NM_016194, intron 3 of 12)	intron (NM_016194, intron 3 of 12)	1916	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
177550	chr4	119138121	119138380	+	0	NA	intron (NM_016599, intron 2 of 5)	intron (NM_016599, intron 2 of 5)	2418	NM_016599	51778		NM_016599	ENSG00000172399	MYOZ2	C4orf5|CMH16|CS-1|FATZ-2	myozenin 2	protein-coding
223213	chr8	143590121	143591330	+	0	NA	5' UTR (NM_032378, exon 2 of 10)	5' UTR (NM_032378, exon 2 of 10)	6688	NM_001130057	1936		NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
30840	chr10	86483371	86483880	+	0	NA	intron (NM_015045, intron 4 of 18)	Tigger3b|DNA|TcMar-Tigger	38159	NM_001318328	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
19566	chr1	179130901	179131430	+	0	NA	intron (NM_001136001, intron 2 of 9)	AluSx|SINE|Alu	11911	NM_001168239	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
38223	chr11	36418751	36419250	+	0	NA	intron (NM_001160167, intron 3 of 8)	intron (NM_001160167, intron 3 of 8)	18003	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
57099	chr12	121046301	121046900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7358	NM_198213	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
179143	chr4	169609971	169610130	+	0	NA	intron (NR_164631, intron 2 of 14)	AluSz|SINE|Alu	2533	NM_001199400	4750		NM_012224	ENSG00000137601	NEK1	ALS24|NY-REN-55|OFD2|SRPS2|SRPS2A|SRTD6	NIMA related kinase 1	protein-coding
223982	chr9	2041821	2042080	+	0	NA	intron (NM_003070, intron 4 of 33)	MIR|SINE|MIR	20005	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
127429	chr2	42136971	42137330	+	0	NA	Intergenic	Intergenic	-32203	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
78413	chr15	92095551	92096250	+	0	NA	intron (NM_013272, intron 3 of 9)	MLT1I|LTR|ERVL-MaLR	241596	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
94949	chr17	32082071	32082430	+	0	NA	Intergenic	L2c|LINE|L2	41914	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
95976	chr17	39158251	39158750	+	0	NA	intron (NM_001143968, intron 5 of 5)	AluJb|SINE|Alu	-6863	NM_020405	57125		NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
209338	chr7	76237351	76237650	+	0	NA	intron (NM_001291831, intron 2 of 15)	AluSz|SINE|Alu	35604	NM_001110199	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
186735	chr5	139295651	139296250	+	0	NA	intron (NM_001194956, intron 1 of 13)	AluJb|SINE|Alu	2200	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
217798	chr8	33561401	33561980	+	0	NA	intron (NM_024787, intron 1 of 5)	AluSz|SINE|Alu	5438	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
69800	chr14	99199401	99199680	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	72657	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
77985	chr15	89417501	89417930	+	0	NA	intron (NR_160724, intron 2 of 2)	intron (NR_160724, intron 2 of 2)	17544	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
218031	chr8	38771601	38772180	+	0	NA	intron (NM_001352804, intron 1 of 10)	AluJr|SINE|Alu	14615	NM_001352790	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
108530	chr18	74379471	74379700	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-29863	NR_131977	101927606		NR_131977	ENSG00000259779	LINC01922	-	long intergenic non-protein coding RNA 1922	ncRNA
194479	chr6	33215051	33215480	+	0	NA	Intergenic	Intergenic	6765	NM_002931	6015		NM_002931	ENSG00000204227	RING1	RING1A|RNF1	ring finger protein 1	protein-coding
143871	chr20	32554171	32555180	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	30658	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
133262	chr2	113436601	113436800	+	0	NA	promoter-TSS (NR_138473)	promoter-TSS (NR_138473)	-991	NM_001330340	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
219695	chr8	80870901	80871300	+	0	NA	intron (NM_001033723, intron 1 of 8)	L2a|LINE|L2	3368	NM_001367783	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
218304	chr8	42537071	42538230	+	0	NA	intron (NM_006749, intron 1 of 10)	intron (NM_006749, intron 1 of 10)	-3498	NM_001135676	114926		NM_138436	ENSG00000176209	SMIM19	C8orf40	small integral membrane protein 19	protein-coding
228351	chr9	99027771	99027930	+	0	NA	intron (NM_001855, intron 16 of 41)	intron (NM_001855, intron 16 of 41)	-77263	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233551	chrX	268101	268580	+	0	NA	Intergenic	Intergenic	-8016	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
130134	chr2	74833351	74834400	+	0	NA	promoter-TSS (NM_000189)	promoter-TSS (NM_000189)	-252	NM_000189	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
116958	chr19	18858601	18858800	+	0	NA	intron (NM_001297549, intron 15 of 23)	Charlie1b|DNA|hAT-Charlie	26741	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
58428	chr12	131927401	131927880	+	0	NA	Intergenic	Intergenic	-1636	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
202352	chr6	157614171	157614330	+	0	NA	intron (NM_024630, intron 3 of 8)	intron (NM_024630, intron 3 of 8)	85118	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
88068	chr16	81469401	81470850	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	24955	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
8324	chr1	40163051	40163650	+	0	NA	intron (NM_012421, intron 1 of 7)	intron (NM_012421, intron 1 of 7)	1963	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
11685	chr1	91841071	91841430	+	0	NA	intron (NR_036634, intron 2 of 17)	Charlie1a|DNA|hAT-Charlie	44901	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
70921	chr14	104149971	104150630	+	0	NA	intron (NM_015656, intron 2 of 14)	intron (NM_015656, intron 2 of 14)	11577	NM_015656	26153		NM_015656	ENSG00000066735	KIF26A	CDCBM11	kinesin family member 26A	protein-coding
25301	chr10	6202451	6205050	+	0	NA	intron (NM_001314063, intron 1 of 15)	CpG-2634	818	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
21309	chr1	204505771	204508250	+	0	NA	Intergenic	L1MA8|LINE|L1	-9369	NM_001204172	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
69461	chr14	94941451	94941550	+	0	NA	Intergenic	Intergenic	170858	NR_144432	108868751		NR_144432		GSC-DT	DIGIT	GSC divergent transcript	ncRNA
203964	chr7	1562571	1562930	+	0	NA	Intergenic	Intergenic	-6545	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
123089	chr19	51421171	51421330	+	0	NA	Intergenic	Intergenic	-3608	NM_001171158	89790		NM_033130	ENSG00000142512	SIGLEC10	PRO940|SIGLEC-10|SLG2	sialic acid binding Ig like lectin 10	protein-coding
153345	chr22	24417451	24417750	+	0	NA	3' UTR (NM_001254733, exon 9 of 9)	3' UTR (NM_001254733, exon 9 of 9)	-5997	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
3805	chr1	16733571	16733930	+	0	NA	Intergenic	AluYc|SINE|Alu	-6766	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
164356	chr3	58079801	58080000	+	0	NA	intron (NM_001164319, intron 3 of 44)	intron (NM_001164319, intron 3 of 44)	71478	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
64404	chr14	24172751	24172850	+	0	NA	intron (NM_001048205, intron 2 of 18).2	CpG-7145	720	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
153870	chr22	30255901	30256780	+	0	NA	Intergenic	Intergenic	-9581	NM_002309	3976		NM_002309	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	LIF interleukin 6 family cytokine	protein-coding
141397	chr2	240840501	240840780	+	0	NA	Intergenic	Intergenic	-19237	NM_001379653	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
25972	chr10	11712901	11713500	+	0	NA	Intergenic	Intergenic	-29182	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
116608	chr19	18277201	18278200	+	0	NA	Intergenic	AluY|SINE|Alu	-3248	NM_001145305	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
68852	chr14	91297321	91297800	+	0	NA	intron (NM_001080414, intron 21 of 29)	MIR3|SINE|MIR	-43680	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
90049	chr16	89922901	89923900	+	0	NA	promoter-TSS (NM_006086)	promoter-TSS (NM_006086)	58	NM_006086	10381		NM_006086	ENSG00000258947	TUBB3	CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4	tubulin beta 3 class III	protein-coding
168151	chr3	139113651	139113950	+	0	NA	intron (NR_026783, intron 2 of 2)	MIRb|SINE|MIR	9615	NR_026783	60467		NM_021812	ENSG00000232416	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis candidate 1	ncRNA
10182	chr1	61459301	61459530	+	0	NA	3' UTR (NM_005595, exon 10 of 10)	3' UTR (NM_005595, exon 10 of 10)	-194827	NR_073400	414927		NR_073400		MGC34796	-	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene	pseudo
101928	chr17	74470471	74470830	+	0	NA	intron (NM_001256841, intron 1 of 5)	AluJb|SINE|Alu	4016	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
214687	chr7	150976101	150976300	+	0	NA	intron (NM_172056, intron 1 of 8)	intron (NM_172056, intron 1 of 8)	2114	NM_172056	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
230110	chr9	127611201	127612700	+	0	NA	promoter-TSS (NM_003165)	promoter-TSS (NM_003165)	38	NM_001374309	6812		NM_003165	ENSG00000136854	STXBP1	DEE4|MUNC18-1|N-Sec1|NSEC1|P67|RBSEC1|UNC18|unc-18A|unc18-1	syntaxin binding protein 1	protein-coding
182394	chr5	61285771	61286180	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-21046	NR_146624	105378992		NR_146624	ENSG00000249279	LINC02057	-	long intergenic non-protein coding RNA 2057	ncRNA
45318	chr11	118173771	118173930	+	0	NA	intron (NM_004588, intron 1 of 3)	intron (NM_004588, intron 1 of 3)	2789	NM_004588	6327		NM_004588	ENSG00000149575	SCN2B	ATFB14	sodium voltage-gated channel beta subunit 2	protein-coding
3507	chr1	16046171	16046550	+	0	NA	intron (NM_000085, intron 3 of 19)	MIR|SINE|MIR	-2402	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
57127	chr12	121212921	121213330	+	0	NA	intron (NR_046373, intron 1 of 10)	MER33|DNA|hAT-Charlie	2996	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
211007	chr7	102321051	102321630	+	0	NA	exon (NM_020979, exon 9 of 9)	exon (NM_020979, exon 9 of 9)	28237	NR_036245	100422858		NR_036245	ENSG00000264675	MIR4285	-	microRNA 4285	ncRNA
130616	chr2	85997471	85997630	+	0	NA	Intergenic	Intergenic	108270	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
126374	chr2	27487551	27488100	+	0	NA	intron (NM_015662, intron 1 of 47)	AluSx|SINE|Alu	1918	NM_015662	26160		NM_015662	ENSG00000138002	IFT172	BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim	intraflagellar transport 172	protein-coding
227444	chr9	90223701	90224100	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-182401	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
195375	chr6	36687821	36688280	+	0	NA	TTS (NM_000389)	TTS (NM_000389)	9336	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
65872	chr14	55076551	55076650	+	0	NA	Intergenic	MIR|SINE|MIR	24953	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
131513	chr2	96549371	96550030	+	0	NA	intron (NM_212481, intron 3 of 6)	intron (NM_212481, intron 3 of 6)	11821	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
28952	chr10	63227121	63227680	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	41823	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
124900	chr2	8474171	8474330	+	0	NA	Intergenic	Intergenic	109542	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
53109	chr12	57774751	57775250	+	0	NA	intron (NM_206914, intron 3 of 3)	AluSp|SINE|Alu	2386	NM_206914	25895		NM_015433	ENSG00000123427	EEF1AKMT3	FAM119B|METTL21B	EEF1A lysine methyltransferase 3	protein-coding
208514	chr7	69905621	69905700	+	0	NA	intron (NM_001127232, intron 2 of 4)	Ricksha_c|DNA|MULE-MuDR	307185	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
24567	chr1	244968101	244968630	+	0	NA	non-coding (NR_111907, exon 2 of 2)	non-coding (NR_111907, exon 2 of 2)	-1504	NM_032328	84288		NM_032328	ENSG00000203666	EFCAB2	CFAP200|DRC8	EF-hand calcium binding domain 2	protein-coding
195840	chr6	41375071	41375700	+	0	NA	Intergenic	Intergenic	39777	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
14330	chr1	143905621	143906350	+	0	NA	promoter-TSS (NM_001355409)	promoter-TSS (NM_001355409)	-8	NM_001372105	440686		NM_001025303	ENSG00000273213	H3-7	H3-2|H3.7|HIST2H3PS2|p06	H3.7 histone (putative)	protein-coding
37804	chr11	32884801	32885030	+	0	NA	Intergenic	L1MC4|LINE|L1	-7896	NM_001076786	79832		NM_024774	ENSG00000060749	QSER1	-	glutamine and serine rich 1	protein-coding
160960	chr3	36988101	36988900	+	0	NA	3' UTR (NM_014805, exon 1 of 1)	3' UTR (NM_014805, exon 1 of 1)	4631	NM_014805	9852		NM_014805	ENSG00000178567	EPM2AIP1	-	EPM2A interacting protein 1	protein-coding
29900	chr10	73142471	73142630	+	0	NA	intron (NM_001135752, intron 9 of 14)	AluSc|SINE|Alu	-16343	NR_145776	109617000		NR_145776	ENSG00000221164	SNORA11F	-	small nucleolar RNA, H/ACA box 11F	snoRNA
148094	chr20	63312521	63312780	+	0	NA	intron (NM_020882, intron 15 of 35)	intron (NM_020882, intron 15 of 35)	19464	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
234061	chrX	7146071	7146380	+	0	NA	intron (NM_001135565, intron 1 of 4)	intron (NM_001135565, intron 1 of 4)	-1065	NM_001320750	412		NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase	protein-coding
5057	chr1	24586921	24587550	+	0	NA	intron (NM_001010980, intron 1 of 3)	L3b|LINE|CR1	31148	NM_001010980	400746		NM_001010980	ENSG00000184454	NCMAP	C1orf130|MP11	non-compact myelin associated protein	protein-coding
118752	chr19	38358071	38359500	+	0	NA	intron (NM_001330496, intron 12 of 27)	intron (NM_001330496, intron 12 of 27)	-15786	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
102704	chr17	76147621	76147880	+	0	NA	intron (NR_040017, intron 6 of 7)	intron (NR_040017, intron 6 of 7)	-6505	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
189884	chr5	177322051	177322350	+	0	NA	Intergenic	L1MEh|LINE|L1	-10302	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
135508	chr2	162007501	162007850	+	0	NA	intron (NR_166824, intron 22 of 25)	intron (NR_166824, intron 22 of 25)	66540	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
228678	chr9	107341021	107341580	+	0	NA	Intergenic	Intergenic	56531	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
221475	chr8	124481571	124482030	+	0	NA	intron (NM_007218, intron 1 of 1)	intron (NM_007218, intron 1 of 1)	6920	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
224156	chr9	4938671	4939330	+	0	NA	Intergenic	Intergenic	-46086	NM_001322195	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
237235	chrX	109794201	109794600	+	0	NA	Intergenic	AluSp|SINE|Alu	-61008	NM_022977	2182		NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68|XLID63	acyl-CoA synthetase long chain family member 4	protein-coding
201584	chr6	149337671	149338030	+	0	NA	intron (NM_015093, intron 2 of 8)	intron (NM_015093, intron 2 of 8)	19550	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
138583	chr2	207771171	207771550	+	0	NA	Intergenic	Intergenic	-1454	NM_003468	7855		NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5|MCOPCB11	frizzled class receptor 5	protein-coding
123383	chr19	53910201	53910600	+	0	NA	intron (NM_031896, intron 1 of 5)	intron (NM_031896, intron 1 of 5)	1122	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
124650	chr2	2613401	2614230	+	0	NA	Intergenic	Intergenic	-282540	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
45582	chr11	118881101	118881700	+	0	NA	Intergenic	L3|LINE|CR1	-2492	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
86414	chr16	66843201	66843600	+	0	NA	Intergenic	Intergenic	-1014	NM_005182	766		NM_005182	ENSG00000168748	CA7	CA-VII|CAVII	carbonic anhydrase 7	protein-coding
210442	chr7	100103251	100103350	+	0	NA	intron (NM_004722, intron 4 of 14)	AluJr|SINE|Alu	1652	NM_001363671	9179		NM_004722	ENSG00000221838	AP4M1	CPSQ3|MU-4|MU-ARP2|SPG50	adaptor related protein complex 4 subunit mu 1	protein-coding
1263	chr1	2304671	2304830	+	0	NA	intron (NM_003036, intron 5 of 6)	intron (NM_003036, intron 5 of 6)	47911	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
179392	chr4	183658701	183659750	+	0	NA	promoter-TSS (NM_001307922)	promoter-TSS (NM_001307922)	-40	NM_001307922	201965		NM_152682	ENSG00000182552	RWDD4	FAM28A|RWDD4A	RWD domain containing 4	protein-coding
156535	chr22	41423921	41424730	+	0	NA	Intergenic	AluJo|SINE|Alu	22476	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
98956	chr17	48646101	48648430	+	0	NA	Intergenic	Intergenic	-14706	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
102953	chr17	76686771	76687130	+	0	NA	intron (NM_001008528, intron 2 of 3)	intron (NM_001008528, intron 2 of 3)	1713	NM_001363769	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
186869	chr5	139492601	139493000	+	0	NA	Intergenic	Intergenic	-10042	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
9731	chr1	53194951	53195400	+	0	NA	Intergenic	Intergenic	-1649	NM_001330589	1376		NM_000098	ENSG00000157184	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
231885	chr9	133023271	133023430	+	0	NA	Intergenic	Intergenic	2920	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
172882	chr4	3415021	3415150	+	0	NA	intron (NM_198227, intron 4 of 15)	intron (NM_198227, intron 4 of 15)	-26883	NM_001528	3083		NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
221562	chr8	125093971	125094330	+	0	NA	intron (NM_001349485, intron 1 of 6)	intron (NM_001349485, intron 1 of 6)	2290	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
111204	chr19	3470871	3471230	+	0	NA	Intergenic	L2a|LINE|L2	9475	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
121251	chr19	46674621	46675150	+	0	NA	intron (NM_001079881, intron 18 of 18)	intron (NM_001079881, intron 18 of 18)	13407	NR_040041	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
215522	chr7	158733051	158733150	+	0	NA	3' UTR (NM_001367773, exon 23 of 23)	3' UTR (NM_001367773, exon 23 of 23)	-28296	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
238815	chrX	154408801	154409780	+	0	NA	promoter-TSS (NM_006730)	promoter-TSS (NM_006730)	-36	NM_006730	1774		NM_006730	ENSG00000013563	DNASE1L1	DNAS1L1|DNASEX|DNL1L|G4.8|XIB	deoxyribonuclease 1 like 1	protein-coding
200786	chr6	137882371	137883080	+	0	NA	3' UTR (NM_001270508, exon 9 of 9)	3' UTR (NM_001270508, exon 9 of 9)	-14492	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
217766	chr8	32548951	32549250	+	0	NA	intron (NM_001160005, intron 1 of 4)	CpG	789	NM_001160004	3084		NM_004495	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
184188	chr5	95832921	95833500	+	0	NA	Intergenic	L1M7|LINE|L1	-1617	NR_157807	102724720		NR_157807		LOC102724720	-	uncharacterized LOC102724720	ncRNA
73549	chr15	44194121	44195750	+	0	NA	promoter-TSS (NM_001286490)	promoter-TSS (NM_001286490)	336	NM_032892	84978		NM_032892	ENSG00000171877	FRMD5	NEDEMA	FERM domain containing 5	protein-coding
102603	chr17	75908521	75908980	+	0	NA	TTS (NM_001319193)	TTS (NM_001319193)	-3866	NM_032478	64978		NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3|mL38	mitochondrial ribosomal protein L38	protein-coding
214719	chr7	151015101	151016400	+	0	NA	intron (NR_073169, intron 13 of 17)	intron (NR_073169, intron 13 of 17)	8749	NM_001317056	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
219372	chr8	70376251	70377230	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	26650	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
111589	chr19	4085571	4086150	+	0	NA	Intergenic	Intergenic	-18961	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
22159	chr1	212188471	212188980	+	0	NA	Intergenic	Intergenic	46011	NR_125983	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
223886	chr9	275751	276250	+	0	NA	intron (NM_001193536, intron 1 of 46)	AluSx1|SINE|Alu	2952	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
212709	chr7	129781481	129783950	+	0	NA	Intergenic	Intergenic	-7701	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
485	chr1	1167801	1168200	+	0	NA	TTS (NR_029639)	TTS (NR_029639)	137	NR_029834	406983		NR_029834	ENSG00000207607	MIR200A	MIRN200A|mir-200a	microRNA 200a	ncRNA
104613	chr17	81420021	81420500	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-19482	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
125620	chr2	19349801	19350830	+	0	NA	Intergenic	Intergenic	1886	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
211166	chr7	102582351	102582750	+	0	NA	3' UTR (NM_006989, exon 21 of 21)	3' UTR (NM_006989, exon 21 of 21)	-9929	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
17936	chr1	160321271	160321430	+	0	NA	intron (NM_001098398, intron 8 of 32)	L1MA4|LINE|L1	4085	NR_002190	474338		NR_002190		SUMO1P3	-	SUMO1 pseudogene 3	pseudo
118519	chr19	35997371	35997750	+	0	NA	Intergenic	Intergenic	2372	NM_001042631	644096		NM_001042631	ENSG00000205138	SDHAF1	LYRM8|MC2DN2	succinate dehydrogenase complex assembly factor 1	protein-coding
158599	chr3	4825771	4826850	+	0	NA	intron (NM_002222, intron 56 of 57)	intron (NM_002222, intron 56 of 57)	-74720	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
45485	chr11	118607001	118608000	+	0	NA	promoter-TSS (NM_001144758)	promoter-TSS (NM_001144758)	-115	NM_001144758	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
231331	chr9	130170171	130170330	+	0	NA	Intergenic	AluJb|SINE|Alu	-2154	NM_014286	23413		NM_014286	ENSG00000107130	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
225126	chr9	33510651	33511250	+	0	NA	non-coding (NR_003667, exon 1 of 7)	non-coding (NR_003667, exon 1 of 7)	216	NR_003667	441394		NM_001007550		SUGT1P1	SGT1P|SUGT1P|bA255A11.1	SUGT1 pseudogene 1	pseudo
46510	chr11	128422521	128423530	+	0	NA	Intergenic	Intergenic	99285	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
111660	chr19	4232521	4232780	+	0	NA	intron (NM_005755, intron 2 of 4)	AluJo|SINE|Alu	3127	NM_005755	10148		NM_005755	ENSG00000105246	EBI3	IL-27B|IL27B|IL35B	Epstein-Barr virus induced 3	protein-coding
126241	chr2	27071021	27072800	+	0	NA	promoter-TSS (NM_001134693)	promoter-TSS (NM_001134693)	-256	NM_001134693	100128731		NM_001134693	ENSG00000228474	OST4	-	oligosaccharyltransferase complex subunit 4, non-catalytic	protein-coding
152463	chr22	20707321	20707580	+	0	NA	TTS (NM_058004)	TTS (NM_058004)	6336	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
105088	chr17	82116351	82116650	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-18264	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
142793	chr20	13546571	13546830	+	0	NA	intron (NM_001323602, intron 4 of 9)	intron (NM_001323602, intron 4 of 9)	92232	NM_017714	55617		NM_017714	ENSG00000089123	TASP1	C20orf13|SULEHS|dJ585I14.2	taspase 1	protein-coding
231004	chr9	129504521	129504780	+	0	NA	intron (NR_038955, intron 4 of 4)	intron (NR_038955, intron 4 of 4)	15990	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
71636	chr14	106750201	106750550	+	0	NA	Intergenic	Intergenic	100624	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
234684	chrX	20315171	20315330	+	0	NA	Intergenic	Intergenic	-48341	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
108003	chr18	58694721	58695180	+	0	NA	intron (NM_173844, intron 2 of 15)	THE1B|LTR|ERVL-MaLR	-23077	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
169451	chr3	167734151	167736080	+	0	NA	promoter-TSS (NM_145859)	promoter-TSS (NM_145859)	-223	NM_007217	11235		NM_007217	ENSG00000114209	PDCD10	CCM3|TFAR15	programmed cell death 10	protein-coding
160254	chr3	25594051	25594550	+	0	NA	intron (NM_000965, intron 6 of 7)	intron (NM_000965, intron 6 of 7)	70072	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
6664	chr1	29123941	29125200	+	0	NA	promoter-TSS (NM_001003682)	promoter-TSS (NM_001003682)	-667	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
104714	chr17	81555221	81556050	+	0	NA	Intergenic	AluSx|SINE|Alu	-3282	NM_025161	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
189005	chr5	168486051	168487340	+	0	NA	intron (NM_002887, intron 1 of 14)	intron (NM_002887, intron 1 of 14)	224	NM_002887	5917		NM_002887	ENSG00000113643	RARS1	ArgRS|DALRD1|HLD9|RARS	arginyl-tRNA synthetase 1	protein-coding
33986	chr10	124668451	124668780	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-35413	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
98620	chr17	47778271	47778800	+	0	NA	Intergenic	CpG	43259	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
95551	chr17	36723671	36724200	+	0	NA	Intergenic	L2c|LINE|L2	122352	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
91559	chr17	5062321	5062980	+	0	NA	Intergenic	Intergenic	-15817	NM_153018	124961		NM_153018	ENSG00000180787	ZFP3	ZNF752	ZFP3 zinc finger protein	protein-coding
37264	chr11	14661721	14661980	+	0	NA	intron (NM_001363569, intron 1 of 15)	L1PA3|LINE|L1	18046	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
18395	chr1	161402451	161402850	+	0	NA	Intergenic	Intergenic	-34774	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
183858	chr5	87123001	87123200	+	0	NA	intron (NR_105018, intron 1 of 3)	intron (NR_105018, intron 1 of 3)	2952	NR_105018	101929380		NR_105018		LOC101929380	-	uncharacterized LOC101929380	ncRNA
201209	chr6	143531721	143532030	+	0	NA	Intergenic	L2b|LINE|L2	-20155	NM_032020	2519		NM_032020	ENSG00000001036	FUCA2	dJ20N2.5	alpha-L-fucosidase 2	protein-coding
131207	chr2	95051271	95052030	+	0	NA	intron (NM_022439, intron 2 of 2)	L1ME3A|LINE|L1	25942	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
72252	chr15	30553251	30553750	+	0	NA	intron (NM_001355476, intron 1 of 18)	intron (NM_001355476, intron 1 of 18)	1422	NM_001355476	727909		NM_001355476	ENSG00000178115	GOLGA8Q	-	golgin A8 family member Q	protein-coding
234783	chrX	23959651	23959950	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	51794	NM_001169574	254158		NM_152761	ENSG00000165182	CXorf58	-	chromosome X open reading frame 58	protein-coding
117035	chr19	18928321	18928730	+	0	NA	TTS (NM_004838)	TTS (NM_004838)	8810	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
142694	chr20	8050251	8050550	+	0	NA	Intergenic	LTR78|LTR|ERV1	-30639	NM_021156	56255		NM_021156	ENSG00000125827	TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin related transmembrane protein 4	protein-coding
48796	chr12	11894921	11895200	+	0	NA	3' UTR (NM_001987, exon 8 of 8)	3' UTR (NM_001987, exon 8 of 8)	-154801	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
72434	chr15	31507451	31507850	+	0	NA	intron (NM_130901, intron 9 of 13)	LTR12F|LTR|ERV1	180815	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
67126	chr14	68607471	68607830	+	0	NA	intron (NM_001321809, intron 11 of 11)	intron (NM_001321809, intron 11 of 11)	21137	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
28537	chr10	50522971	50523130	+	0	NA	intron (NM_147156, intron 2 of 10)	L1MEc|LINE|L1	100906	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
18360	chr1	161291551	161292180	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	18103	NM_000530	4359		NM_000530	ENSG00000158887	MPZ	CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0	myelin protein zero	protein-coding
106416	chr18	13513001	13513200	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	53153	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
122910	chr19	50606001	50606450	+	0	NA	Intergenic	CpG	1262	NR_004384	100126781		NR_004384		SNAR-F	-	small NF90 (ILF3) associated RNA F	snRNA
214552	chr7	150555701	150555900	+	0	NA	Intergenic	Intergenic	-11570	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
7058	chr1	31980251	31980350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-33568	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
127355	chr2	39136571	39137480	+	0	NA	Intergenic	Intergenic	-12157	NM_001382394	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
93003	chr17	17184721	17185450	+	0	NA	3' UTR (NM_001364716, exon 24 of 24)	3' UTR (NM_001364716, exon 24 of 24)	21248	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
114261	chr19	11557871	11558030	+	0	NA	intron (NM_001363675, intron 1 of 5)	L2|LINE|L2	1280	NM_001363675	84337		NM_032377	ENSG00000130165	ELOF1	ELF1	elongation factor 1	protein-coding
222078	chr8	130349871	130350230	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-53517	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
233476	chr9	137761021	137761280	+	0	NA	intron (NM_024757, intron 9 of 26)	MER57F|LTR|ERV1	27256	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
199525	chr6	118723571	118724750	+	0	NA	Intergenic	L1MB3|LINE|L1	-14085	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
173834	chr4	20685121	20685480	+	0	NA	Intergenic	Intergenic	-10982	NR_133933	133015		NM_145048	ENSG00000163138	PACRGL	C4orf28	parkin coregulated like	protein-coding
39437	chr11	60916621	60917230	+	0	NA	intron (NM_024092, intron 1 of 3)	intron (NM_024092, intron 1 of 3)	2767	NM_024092	79073		NM_024092	ENSG00000110108	TMEM109	SND3|hSND3	transmembrane protein 109	protein-coding
42678	chr11	72596521	72596980	+	0	NA	intron (NM_001243784, intron 5 of 30)	intron (NM_001243784, intron 5 of 30)	18380	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
203250	chr6	169242201	169243380	+	0	NA	intron (NM_001381941, intron 4 of 4)	intron (NM_001381941, intron 4 of 4)	11056	NM_001381940	7058		NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
64698	chr14	33946721	33946980	+	0	NA	intron (NM_001308103, intron 1 of 4)	MIRb|SINE|MIR	4224	NM_001308103	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
94819	chr17	31319351	31319680	+	0	NA	intron (NM_014210, intron 1 of 1)	intron (NM_014210, intron 1 of 1)	2107	NM_014210	2123		NM_014210	ENSG00000126860	EVI2A	EVDA|EVI-2A|EVI2	ecotropic viral integration site 2A	protein-coding
93669	chr17	19232301	19233150	+	0	NA	Intergenic	AluJb|SINE|Alu	-4652	NM_014964	22905		NM_014964	ENSG00000072134	EPN2	EHB21	epsin 2	protein-coding
132360	chr2	105755171	105755400	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	10222	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
119973	chr19	41899101	41899300	+	0	NA	intron (NM_004706, intron 14 of 28)	AluJb|SINE|Alu	14757	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
213062	chr7	131070801	131071690	+	0	NA	intron (NR_109852, intron 2 of 5)	AluY|SINE|Alu	35785	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
212631	chr7	129376471	129376880	+	0	NA	intron (NM_001130722, intron 1 of 16)	intron (NM_001130722, intron 1 of 16)	837	NM_001130722	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
69260	chr14	93039101	93039300	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	-2226	NM_001363707	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
178443	chr4	147942851	147943580	+	0	NA	intron (NM_024605, intron 14 of 22)	intron (NM_024605, intron 14 of 22)	160620	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
139921	chr2	230770751	230771330	+	0	NA	intron (NM_016289, intron 2 of 8)	L1ME1|LINE|L1	57492	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
30910	chr10	87080971	87081550	+	0	NA	intron (NM_001318906, intron 1 of 13)	SVA_D|Retroposon|SVA	12827	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
57975	chr12	123974771	123975030	+	0	NA	intron (NM_001347902, intron 2 of 4)	intron (NM_001347902, intron 2 of 4)	1685	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
138231	chr2	202769871	202770230	+	0	NA	TTS (NM_173511)	TTS (NM_173511)	59184	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
204730	chr7	5558681	5560400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-28939	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
11184	chr1	87337201	87337630	+	0	NA	intron (NM_001369491, intron 2 of 4)	intron (NM_001369491, intron 2 of 4)	5671	NM_001369491	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
181697	chr5	50601521	50601900	+	0	NA	Intergenic	L1PA4|LINE|L1	-64221	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
179675	chr4	190020971	190021880	+	0	NA	Intergenic	Intergenic	5831	NM_001005217	448831		NM_001005217	ENSG00000205097	FRG2	FRG2A	FSHD region gene 2	protein-coding
50143	chr12	45730301	45731450	+	0	NA	intron (NM_152641, intron 2 of 20)	(T)n|Simple_repeat|Simple_repeat	1166	NM_001347839	196528		NM_152641	ENSG00000189079	ARID2	BAF200|CSS6|SMARCF3|ZIPZAP|p200	AT-rich interaction domain 2	protein-coding
111948	chr19	4797171	4797330	+	0	NA	3' UTR (NM_018708, exon 1 of 1)	3' UTR (NM_018708, exon 1 of 1)	5516	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
98571	chr17	47713721	47715450	+	0	NA	Intergenic	Intergenic	-18651	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
222934	chr8	143018191	143019980	+	0	NA	promoter-TSS (NR_026913)	promoter-TSS (NR_026913)	556	NM_002346	4061		NM_002346	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	lymphocyte antigen 6 family member E	protein-coding
69295	chr14	93102671	93102830	+	0	NA	intron (NM_014216, intron 2 of 10).2	AluSz|SINE|Alu	13175	NM_001142594	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
17307	chr1	156451671	156452030	+	0	NA	Intergenic	L2|LINE|L2	-22302	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
199847	chr6	127764051	127764650	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	90838	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
84038	chr16	29568021	29568550	+	0	NA	intron (NR_135317, intron 1 of 11)	MIRb|SINE|MIR	26807	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
85943	chr16	57152171	57152530	+	0	NA	TTS (NM_001354080)	TTS (NM_001354080)	30200	NM_001354098	80011		NM_024946	ENSG00000172775	PSME3IP1	C16orf94|CDA018|CDA10|FAM192A|NIP30|PIP30	proteasome activator subunit 3 interacting protein 1	protein-coding
83374	chr16	25257021	25258600	+	0	NA	promoter-TSS (NM_001012981)	promoter-TSS (NM_001012981)	35	NM_001012981	342357		NM_001012981	ENSG00000155592	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding
13329	chr1	113782851	113784950	+	0	NA	intron (NM_018364, intron 2 of 6)	intron (NM_018364, intron 2 of 6)	-24012	NM_001323042	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
76499	chr15	74935271	74936000	+	0	NA	intron (NM_004255, intron 1 of 4)	intron (NM_004255, intron 1 of 4)	2438	NM_004255	9377		NM_004255	ENSG00000178741	COX5A	COX|COX-VA|MC4DN20|VA	cytochrome c oxidase subunit 5A	protein-coding
195692	chr6	38639111	38641200	+	0	NA	promoter-TSS (NM_001099272)	promoter-TSS (NM_001099272)	-226	NM_001099272	114781		NM_052893	ENSG00000183826	BTBD9	dJ322I12.1	BTB domain containing 9	protein-coding
172986	chr4	4171451	4171950	+	0	NA	Intergenic	SATR1|Satellite|Satellite	55229	NM_177998	133060		NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
137536	chr2	197215821	197217100	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	18469	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
188799	chr5	157948851	157949180	+	0	NA	Intergenic	Intergenic	-89870	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
522	chr1	1217701	1218880	+	0	NA	intron (NM_016547, intron 6 of 6)	intron (NM_016547, intron 6 of 6)	-4137	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
34010	chr10	124696221	124697300	+	0	NA	intron (NM_014661, intron 2 of 4)	intron (NM_014661, intron 2 of 4)	-7268	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
210705	chr7	100580651	100581300	+	0	NA	intron (NM_001289934, intron 4 of 17)	intron (NM_001289934, intron 4 of 17)	5154	NM_002319	4034		NM_002319	ENSG00000077454	LRCH4	LRN|LRRN1|LRRN4|PP14183	leucine rich repeats and calponin homology domain containing 4	protein-coding
97193	chr17	42686521	42686780	+	0	NA	intron (NM_003632, intron 6 of 23)	MIRc|SINE|MIR	4119	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
49140	chr12	14939151	14939880	+	0	NA	promoter-TSS (NM_152321)	promoter-TSS (NM_152321)	-978	NM_152321	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
113969	chr19	10807071	10807830	+	0	NA	intron (NM_001005362, intron 13 of 19)	AluSg7|SINE|Alu	10046	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
29673	chr10	72039401	72039800	+	0	NA	Intergenic	Intergenic	48951	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
83	chr1	348121	348400	+	0	NA	Intergenic	Intergenic	103418	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
55138	chr12	98608351	98608650	+	0	NA	Intergenic	AluY|SINE|Alu	8865	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
80289	chr16	2253571	2254380	+	0	NA	non-coding (NR_104485, exon 7 of 7)	non-coding (NR_104485, exon 7 of 7)	-2388	NM_001919	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
137811	chr2	200306251	200307580	+	0	NA	5' UTR (NM_001100423, exon 1 of 13)	5' UTR (NM_001100423, exon 1 of 13)	222	NM_001100423	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
200422	chr6	134908271	134908500	+	0	NA	Intergenic	Intergenic	41716	NM_170771	64577		NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding
110137	chr19	1604911	1606530	+	0	NA	promoter-TSS (NM_006830)	promoter-TSS (NM_006830)	-258	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
108309	chr18	63401201	63401800	+	0	NA	intron (NM_004869, intron 5 of 10)	AluSq|SINE|Alu	20976	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
223507	chr8	144097571	144098330	+	0	NA	TTS (NM_001916)	TTS (NM_001916)	2874	NM_001916	1537		NM_001916	ENSG00000179091	CYC1	MC3DN6|UQCR4	cytochrome c1	protein-coding
238307	chrX	149497501	149498480	+	0	NA	intron (NM_001166550, intron 5 of 8)	intron (NM_001166550, intron 5 of 8)	7316	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
211198	chr7	102609771	102610100	+	0	NA	intron (NM_001079877, intron 2 of 19)	AluSx1|SINE|Alu	6821	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
145119	chr20	38802871	38803780	+	0	NA	Intergenic	L1MB8|LINE|L1	-2372	NM_001172735	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
35866	chr11	2381951	2382700	+	0	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-4333	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
70503	chr14	102191371	102191530	+	0	NA	intron (NM_001353659, intron 1 of 1)	intron (NM_001353659, intron 1 of 1)	43976	NM_001353832	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
39955	chr11	62564201	62564400	+	0	NA	intron (NM_001404, intron 7 of 9)	AluSx|SINE|Alu	2771	NR_106805	102465447		NR_106805	ENSG00000276102	MIR6747	hsa-mir-6747	microRNA 6747	ncRNA
165326	chr3	88019001	88019600	+	0	NA	Intergenic	Intergenic	36724	NM_000866	3355		NM_000866	ENSG00000179097	HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	5-hydroxytryptamine receptor 1F	protein-coding
42367	chr11	68749621	68750800	+	0	NA	exon (NM_004923, exon 2 of 10)	exon (NM_004923, exon 2 of 10)	1310	NM_001039656	9633		NM_004923	ENSG00000132749	TESMIN	CXCDC2|MTL5|MTLT	testis expressed metallothionein like protein	protein-coding
177778	chr4	122825201	122825400	+	0	NA	Intergenic	AluSp|SINE|Alu	-1408	NM_002006	2247		NM_002006	ENSG00000138685	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2	protein-coding
129771	chr2	71071421	71072680	+	0	NA	intron (NM_017567, intron 4 of 9)	intron (NM_017567, intron 4 of 9)	3402	NM_001365466	55577		NM_017567	ENSG00000124357	NAGK	GNK|HSA242910	N-acetylglucosamine kinase	protein-coding
205542	chr7	19773551	19773650	+	0	NA	promoter-TSS (NM_001366628)	promoter-TSS (NM_001366628)	17	NM_001366626	256130		NM_152774	ENSG00000173452	TMEM196	-	transmembrane protein 196	protein-coding
197382	chr6	73491021	73491280	+	0	NA	intron (NM_133645, intron 10 of 12)	LTR101_Mam|LTR|ERVL	27288	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
80938	chr16	3824671	3824830	+	0	NA	intron (NM_004380, intron 2 of 30)	intron (NM_004380, intron 2 of 30)	55370	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
55831	chr12	108884351	108884680	+	0	NA	intron (NM_001917, intron 1 of 10)	intron (NM_001917, intron 1 of 10)	4423	NM_001917	1610		NM_001917	ENSG00000110887	DAO	DAAO|DAMOX|OXDA	D-amino acid oxidase	protein-coding
51839	chr12	53460701	53461380	+	0	NA	exon (NM_001128912, exon 7 of 15)	exon (NM_001128912, exon 7 of 15)	-3428	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
32732	chr10	104300571	104301580	+	0	NA	3' UTR (NM_001191014, exon 5 of 5)	3' UTR (NM_001191014, exon 5 of 5)	-22289	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
9308	chr1	46493901	46494500	+	0	NA	intron (NM_172225, intron 2 of 5)	intron (NM_172225, intron 2 of 5)	4364	NM_172225	127343		NM_147192	ENSG00000197587	DMBX1	Atx|MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
204366	chr7	2953101	2953300	+	0	NA	intron (NM_032415, intron 2 of 24)	intron (NM_032415, intron 2 of 24)	90667	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
156806	chr22	41924271	41924500	+	0	NA	3' UTR (NM_052945, exon 3 of 3)	3' UTR (NM_052945, exon 3 of 3)	-1088	NR_039760	100616259		NR_039760	ENSG00000283829	MIR378I	-	microRNA 378i	ncRNA
103447	chr17	78274371	78274530	+	0	NA	intron (NR_073178, intron 1 of 6)	AluSx1|SINE|Alu	4042	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
93178	chr17	17800451	17800780	+	0	NA	intron (NM_030665, intron 3 of 5)	intron (NM_030665, intron 3 of 5)	12930	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
42169	chr11	67807271	67807450	+	0	NA	Intergenic	Intergenic	-2024	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
233449	chr9	137627651	137627750	+	0	NA	intron (NM_001354612, intron 1 of 8)	HAL1|LINE|L1	8695	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
187463	chr5	142128571	142129180	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	20096	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
207319	chr7	44037571	44037980	+	0	NA	intron (NR_024116, intron 4 of 8)	AluJr|SINE|Alu	-1274	NR_072982	255031		NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
163954	chr3	52896821	52898280	+	0	NA	promoter-TSS (NM_198563)	promoter-TSS (NM_198563)	-2	NM_001198974	100526772		NM_001198974	ENSG00000248592	STIMATE-MUSTN1	TMEM110-MUSTN1	STIMATE-MUSTN1 readthrough	protein-coding
137317	chr2	195938351	195938450	+	0	NA	intron (NM_018897, intron 19 of 64)	intron (NM_018897, intron 19 of 64)	130437	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
132736	chr2	109335221	109335900	+	0	NA	intron (NM_001099289, intron 1 of 9)	L2a|LINE|L2	-21935	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	ncRNA
185231	chr5	122848621	122849000	+	0	NA	intron (NR_146145, intron 1 of 7)	intron (NR_146145, intron 1 of 7)	3197	NM_014035	28966		NM_014035	ENSG00000064652	SNX24	PRO1284|SBBI31	sorting nexin 24	protein-coding
101765	chr17	72727501	72727980	+	0	NA	intron (NM_001352691, intron 8 of 10)	intron (NM_001352691, intron 8 of 10)	-87268	NR_033876	400619		NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
32474	chr10	102658051	102658880	+	0	NA	TTS (NM_001345950)	TTS (NM_001345950)	13970	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
125402	chr2	11669701	11670080	+	0	NA	exon (NM_012344, exon 1 of 4)	exon (NM_012344, exon 1 of 4)	305	NM_012344	23620		NM_012344	ENSG00000169006	NTSR2	NTR2	neurotensin receptor 2	protein-coding
63937	chr14	22053041	22053430	+	0	NA	Intergenic	(TAATTT)n|Simple_repeat|Simple_repeat	379518	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
186787	chr5	139359921	139360180	+	0	NA	intron (NM_001033112, intron 1 of 3)	AluSx4|SINE|Alu	17616	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
213178	chr7	132450071	132450480	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	126195	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
18025	chr1	160574451	160574550	+	0	NA	intron (NM_003874, intron 1 of 6)	MIRc|SINE|MIR	4996	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
155061	chr22	37518771	37519880	+	0	NA	promoter-TSS (NM_014550)	promoter-TSS (NM_014550)	90	NM_014550	29775		NM_014550	ENSG00000100065	CARD10	BIMP1|CARMA3|IMD89	caspase recruitment domain family member 10	protein-coding
5482	chr1	25673621	25673880	+	0	NA	intron (NM_020379, intron 1 of 11)	MIRb|SINE|MIR	-22405	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
145060	chr20	38448171	38448630	+	0	NA	promoter-TSS (NR_002986)	promoter-TSS (NR_002986)	317	NR_002972	677821		NR_002972	ENSG00000274309	SNORA71E	ACA39|SNORA39	small nucleolar RNA, H/ACA box 71E	snoRNA
60664	chr13	42996671	42996830	+	0	NA	Intergenic	Intergenic	-4509	NM_001331228	94240		NM_033255	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1	protein-coding
93871	chr17	21035801	21036330	+	0	NA	intron (NM_015276, intron 1 of 12)	L1MC3|LINE|L1	6946	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
172578	chr4	2469601	2470230	+	0	NA	5' UTR (NM_001185009, exon 1 of 9)	5' UTR (NM_001185009, exon 1 of 9)	462	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
163604	chr3	51987521	51987850	+	0	NA	intron (NM_001316331, intron 14 of 16)	intron (NM_001316331, intron 14 of 16)	4150	NM_000666	95		NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
89857	chr16	89613421	89613880	+	0	NA	intron (NM_001128141, intron 1 of 10)	intron (NM_001128141, intron 1 of 10)	342	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
162362	chr3	47847051	47847680	+	0	NA	intron (NM_014966, intron 13 of 22)	intron (NM_014966, intron 13 of 22)	-2190	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
99705	chr17	50860971	50861650	+	0	NA	TTS (NM_001243877)	TTS (NM_001243877)	5044	NM_001243885	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
238801	chrX	154392621	154393150	+	0	NA	Intergenic	AluJo|SINE|Alu	-5180	NM_001303625	6134		NM_006013	ENSG00000147403	RPL10	AUTSX5|DXS648|DXS648E|L10|MRXS35|NOV|QM|uL16	ribosomal protein L10	protein-coding
40032	chr11	62678471	62679680	+	0	NA	promoter-TSS (NM_001286078)	promoter-TSS (NM_001286078)	-2	NM_015853	51035		NM_015853	ENSG00000162191	UBXN1	2B28|SAKS1|UBXD10	UBX domain protein 1	protein-coding
174332	chr4	38675451	38676350	+	0	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-11272	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
130866	chr2	87403401	87403930	+	0	NA	Intergenic	AluSx3|SINE|Alu	-51762	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
231468	chr9	131309571	131310000	+	0	NA	TTS (NM_032728)	TTS (NM_032728)	20062	NM_032728	84814		NM_032728	ENSG00000160539	PLPP7	C9orf67|NET39|PPAPDC3	phospholipid phosphatase 7 (inactive)	protein-coding
135799	chr2	169830621	169831280	+	0	NA	intron (NM_172070, intron 1 of 38)	intron (NM_172070, intron 1 of 38)	3496	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
31676	chr10	97433621	97434080	+	0	NA	TTS (NM_002629)	TTS (NM_002629)	6173	NM_001317079	5223		NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
238665	chrX	154025151	154025750	+	0	NA	3' UTR (NM_001316337, exon 5 of 5)	3' UTR (NM_001316337, exon 5 of 5)	-5461	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
205797	chr7	24052971	24053200	+	0	NA	Intergenic	Intergenic	-231105	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
34641	chr10	133319921	133320200	+	0	NA	Intergenic	(CTCCCCA)n|Simple_repeat|Simple_repeat	-7723	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
68647	chr14	89953271	89953780	+	0	NA	intron (NM_145231, intron 2 of 5)	intron (NM_145231, intron 2 of 5)	1011	NM_001284268	90141		NM_145231	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
13127	chr1	111645551	111646330	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-18854	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
12743	chr1	109576221	109576480	+	0	NA	intron (NM_006496, intron 3 of 8)	AluSq2|SINE|Alu	-22543	NR_029583	406974		NR_029583	ENSG00000284443	MIR197	MIRN197|miR-197|miRNA197	microRNA 197	ncRNA
112265	chr19	5797071	5797680	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6212	NM_001161619	56931		NM_020175	ENSG00000141994	DUS3L	DUS3	dihydrouridine synthase 3 like	protein-coding
17109	chr1	156152671	156152830	+	0	NA	promoter-TSS (NM_022367)	promoter-TSS (NM_022367)	-828	NM_001193302	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
45296	chr11	118117621	118118280	+	0	NA	non-coding (NR_110734, exon 12 of 12)	non-coding (NR_110734, exon 12 of 12)	27483	NR_024527	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
62249	chr13	98544351	98544450	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-22275	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
199341	chr6	113994871	113995150	+	0	NA	intron (NR_125845, intron 3 of 9)	intron (NR_125845, intron 3 of 9)	-23862	NR_033441	3066		NM_001527	ENSG00000196591	HDAC2	HD2|KDAC2|RPD3|YAF1	histone deacetylase 2	protein-coding
186619	chr5	138535621	138535980	+	0	NA	intron (NM_001291975, intron 2 of 11)	AluSx|SINE|Alu	5911	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
63455	chr13	114126001	114126800	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	6223	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
183677	chr5	80652471	80653150	+	0	NA	intron (NM_001290354, intron 1 of 4)	MIR|SINE|MIR	-1802	NM_001190470	100462981		NM_001190470		MTRNR2L2	HN2	MT-RNR2 like 2 (pseudogene)	pseudo
163703	chr3	52274151	52274950	+	0	NA	intron (NM_025222, intron 1 of 8)	AluJr|SINE|Alu	4099	NM_025222	80335		NM_025222	ENSG00000164091	WDR82	MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A	WD repeat domain 82	protein-coding
2653	chr1	10432171	10432330	+	0	NA	intron (NR_037187, intron 1 of 2)	AluSq|SINE|Alu	1500	NR_036462	378708		NM_199294	ENSG00000175279	CENPS	APITD1|CENP-S|FAAP16|MHF1	centromere protein S	protein-coding
44932	chr11	116549621	116549700	+	0	NA	Intergenic	L3|LINE|CR1	-89762	NR_135069	101929011		NR_135069	ENSG00000237937	LINC02702	LASER	long intergenic non-protein coding RNA 2702	ncRNA
72772	chr15	39801801	39802100	+	0	NA	exon (NM_007223, exon 3 of 3)	exon (NM_007223, exon 3 of 3)	19044	NR_135665	105370941		NR_135665	ENSG00000261136	LOC105370941	-	uncharacterized LOC105370941	ncRNA
198202	chr6	97059421	97059750	+	0	NA	intron (NM_052904, intron 4 of 10)	intron (NM_052904, intron 4 of 10)	49509	NM_001323264	114792		NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
190556	chr5	180799921	180800850	+	0	NA	intron (NR_157150, intron 1 of 1)	MLT1G3|LTR|ERVL-MaLR	2421	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
23014	chr1	226188101	226188350	+	0	NA	Intergenic	AluY|SINE|Alu	-1484	NM_022735	64746		NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
86132	chr16	57684971	57685130	+	0	NA	intron (NM_170776, intron 10 of 11)	intron (NM_170776, intron 10 of 11)	-9756	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
231496	chr9	131394701	131394900	+	0	NA	intron (NM_013318, intron 1 of 31)	CpG	714	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
107289	chr18	44723151	44723680	+	0	NA	intron (NM_001130110, intron 2 of 3)	MIR3|SINE|MIR	22540	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
237287	chrX	112839571	112841900	+	0	NA	promoter-TSS (NM_133265)	promoter-TSS (NM_133265)	96	NM_133265	154796		NM_133265	ENSG00000126016	AMOT	-	angiomotin	protein-coding
116481	chr19	18107271	18107630	+	0	NA	intron (NM_015016, intron 1 of 26)	L2b|LINE|L2	-8634	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
63306	chr13	113991001	113991350	+	0	NA	intron (NM_001320822, intron 22 of 23).2	intron (NM_001320822, intron 22 of 23).2	-17099	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
110269	chr19	1809421	1810550	+	0	NA	intron (NR_047593, intron 3 of 28)	intron (NR_047593, intron 3 of 28)	2291	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
132113	chr2	101486321	101486880	+	0	NA	Intergenic	Intergenic	-11488	NM_001367509	731220		NM_207403	ENSG00000196460	RFX8	-	regulatory factor X8	protein-coding
195918	chr6	41756201	41756600	+	0	NA	Intergenic	Intergenic	-8999	NM_001166424	5225		NM_002630	ENSG00000096088	PGC	PEPC|PGII	progastricsin	protein-coding
191653	chr6	13384951	13385250	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	23037	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
19581	chr1	179294701	179295850	+	0	NA	intron (NR_045530, intron 1 of 13)	L2b|LINE|L2	1478	NM_003101	6646		NM_003101	ENSG00000057252	SOAT1	ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT	sterol O-acyltransferase 1	protein-coding
438	chr1	1113171	1113680	+	0	NA	intron (NM_017891, intron 1 of 9)	intron (NM_017891, intron 1 of 9)	2664	NM_017891	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
214635	chr7	150742201	150743280	+	0	NA	exon (NM_001199577, exon 6 of 6)	exon (NM_001199577, exon 6 of 6)	5392	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
96185	chr17	39736171	39736530	+	0	NA	Intergenic	L2b|LINE|L2	-1588	NM_001330207	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
133424	chr2	118940671	118940830	+	0	NA	Intergenic	Intergenic	-1444	NM_006770	8685		NM_006770	ENSG00000019169	MARCO	SCARA2|SR-A6	macrophage receptor with collagenous structure	protein-coding
1251	chr1	2295171	2295330	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	57411	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
149106	chr21	17506921	17507180	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-5856	NM_001207066	1525		NM_001338	ENSG00000154639	CXADR	CAR|CAR4/6|HCAR	CXADR Ig-like cell adhesion molecule	protein-coding
81240	chr16	4601571	4601900	+	0	NA	Intergenic	Intergenic	13153	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
144242	chr20	34479821	34480080	+	0	NA	intron (NM_031483, intron 18 of 24)	AluSx|SINE|Alu	13625	NR_030374	693229		NR_030374	ENSG00000207997	MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	ncRNA
173007	chr4	4355401	4355600	+	0	NA	Intergenic	LTR24|LTR|ERV1	-31032	NM_001287763	27065		NM_014392	ENSG00000168824	NSG1	D4S234|D4S234E|NEEP21|P21	neuronal vesicle trafficking associated 1	protein-coding
202184	chr6	156059851	156060330	+	0	NA	Intergenic	Intergenic	113293	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
191903	chr6	15400001	15400300	+	0	NA	intron (NM_001267040, intron 2 of 17)	intron (NM_001267040, intron 2 of 17)	151295	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
78919	chr15	101203051	101203630	+	0	NA	intron (NM_014918, intron 2 of 2)	intron (NM_014918, intron 2 of 2)	48708	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
191754	chr6	13908901	13909300	+	0	NA	Intergenic	Intergenic	-15346	NM_001165034	221687		NM_152737	ENSG00000180537	RNF182	-	ring finger protein 182	protein-coding
151642	chr22	16603301	16603500	+	0	NA	intron (NR_001591, intron 1 of 8)	intron (NR_001591, intron 1 of 8)	1489	NR_001591	387590		NR_001591	ENSG00000290418	TPTEP1	psiTPTE22	TPTE pseudogene 1	pseudo
200950	chr6	139176201	139177100	+	0	NA	intron (NM_016217, intron 3 of 3)	intron (NM_016217, intron 3 of 3)	41570	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
87862	chr16	77199021	77199280	+	0	NA	promoter-TSS (NM_001129979)	promoter-TSS (NM_001129979)	-258	NM_001348924	100130958		NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
204398	chr7	3041121	3041730	+	0	NA	intron (NM_001324281, intron 1 of 25)	intron (NM_001324281, intron 1 of 25)	2442	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
217509	chr8	29170301	29170580	+	0	NA	intron (NM_015254, intron 10 of 39)	L2c|LINE|L2	92630	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
94443	chr17	29178671	29179030	+	0	NA	intron (NM_203318, intron 1 of 40)	intron (NM_203318, intron 1 of 40)	1548	NM_001346765	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
192628	chr6	26125201	26127500	+	0	NA	Intergenic	Intergenic	2178	NM_003512	8334		NM_003512	ENSG00000180573	H2AC6	H2A/l|H2AFL|HIST1H2AC|dJ221C16.4	H2A clustered histone 6	protein-coding
207013	chr7	38363301	38364230	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	22188	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
69486	chr14	95480001	95481750	+	0	NA	intron (NM_001384284, intron 1 of 8)	intron (NM_001384284, intron 1 of 8)	19665	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
54701	chr12	93434001	93434400	+	0	NA	intron (NM_003348, intron 1 of 3)	AluSc5|SINE|Alu	7747	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
100106	chr17	58326551	58326650	+	0	NA	intron (NM_001261835, intron 2 of 31)	intron (NM_001261835, intron 2 of 31)	1150	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
41947	chr11	67311401	67312300	+	0	NA	exon (NM_017857, exon 14 of 14)	exon (NM_017857, exon 14 of 14)	-5989	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
126823	chr2	30631001	30631300	+	0	NA	intron (NM_001304445, intron 7 of 7)	MLT1L|LTR|ERVL-MaLR	176296	NM_144575	92291		NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
47894	chr12	6743901	6744100	+	0	NA	Intergenic	AluY|SINE|Alu	8916	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
73797	chr15	48330551	48331600	+	0	NA	promoter-TSS (NM_001025249)	promoter-TSS (NM_001025249)	-20	NM_001330286	1854		NM_001948	ENSG00000128951	DUT	BMFDMS|dUTPase	deoxyuridine triphosphatase	protein-coding
222162	chr8	132774001	132774200	+	0	NA	intron (NM_001382397, intron 1 of 10)	MLT1I|LTR|ERVL-MaLR	-1258	NM_001362971	51105		NM_016018	ENSG00000129292	PHF20L1	CGI-72|TDRD20B|URLC1	PHD finger protein 20 like 1	protein-coding
208161	chr7	64630371	64630730	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-35533	NM_001282360	51427		NM_016220	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
200600	chr6	136703471	136703630	+	0	NA	intron (NM_005923, intron 3 of 29)	intron (NM_005923, intron 3 of 29)	74436	NR_125858	101928461		NR_125858	ENSG00000234263	MAP3K5-AS1	-	MAP3K5 antisense RNA 1	ncRNA
67058	chr14	67722451	67722950	+	0	NA	exon (NM_152443, exon 3 of 9)	exon (NM_152443, exon 3 of 9)	20814	NM_152443	145226		NM_152443	ENSG00000139988	RDH12	LCA13|RP53|SDR7C2	retinol dehydrogenase 12	protein-coding
59764	chr13	30132571	30133380	+	0	NA	Intergenic	Intergenic	20099	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
147593	chr20	61989601	61990200	+	0	NA	intron (NM_003185, intron 14 of 14)	intron (NM_003185, intron 14 of 14)	-36238	NR_031658	100302168		NR_031658	ENSG00000284193	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
196175	chr6	42579451	42579950	+	0	NA	intron (NM_001363705, intron 2 of 46)	AluJo|SINE|Alu	15671	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
13099	chr1	111616021	111617180	+	0	NA	intron (NM_001370216, intron 1 of 7)	L2a|LINE|L2	-3183	NM_002884	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
137084	chr2	190923601	190923800	+	0	NA	intron (NM_014905, intron 9 of 17)	MIR3|SINE|MIR	42879	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
127967	chr2	46698321	46700000	+	0	NA	promoter-TSS (NM_144949)	promoter-TSS (NM_144949)	-135	NM_144949	9655		NM_014011	ENSG00000171150	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
125174	chr2	10072251	10073150	+	0	NA	intron (NM_001037160, intron 1 of 2)	L1MC5a|LINE|L1	7711	NM_001037160	192668		NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
130898	chr2	87442951	87443550	+	0	NA	Intergenic	MIRb|SINE|MIR	-12177	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
156587	chr22	41530651	41531130	+	0	NA	intron (NM_138338, intron 5 of 6)	intron (NM_138338, intron 5 of 6)	13580	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
79477	chr16	762751	763150	+	0	NA	intron (NM_005823, intron 3 of 17)	intron (NM_005823, intron 3 of 17)	1877	NM_013404	10232		NM_005823	ENSG00000102854	MSLN	MPF|SMRP	mesothelin	protein-coding
231837	chr9	132644371	132644550	+	0	NA	intron (NM_001322342, intron 13 of 19)	MIR|SINE|MIR	18866	NM_001322343	64794		NM_022779	ENSG00000125485	DDX31	PPP1R25	DEAD-box helicase 31	protein-coding
22357	chr1	214640621	214641530	+	0	NA	exon (NM_016343, exon 12 of 20)	exon (NM_016343, exon 12 of 20)	37880	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
23837	chr1	234607121	234607600	+	0	NA	exon (NM_001077397, exon 2 of 2)	exon (NM_001077397, exon 2 of 2)	2165	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
101839	chr17	73827701	73828130	+	0	NA	intron (NR_027146, intron 1 of 3)	intron (NR_027146, intron 1 of 3)	622	NR_027146	283982		NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
77580	chr15	85030051	85030630	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	48366	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
34349	chr10	132199601	132200000	+	0	NA	intron (NM_006426, intron 8 of 13)	intron (NM_006426, intron 8 of 13)	12852	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
150644	chr21	43407171	43407330	+	0	NA	Intergenic	AluSx1|SINE|Alu	19881	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
20129	chr1	192545971	192547180	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-29198	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
35376	chr11	1297751	1298250	+	0	NA	intron (NM_001318516, intron 1 of 4)	intron (NM_001318516, intron 1 of 4)	4790	NM_001318514	54472		NM_019009	ENSG00000078902	TOLLIP	IL-1RAcPIP	toll interacting protein	protein-coding
190752	chr6	431751	432380	+	0	NA	Intergenic	Intergenic	40313	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
135777	chr2	169695751	169695850	+	0	NA	intron (NM_001199288, intron 2 of 3)	LTR40b|LTR|ERVL	1331	NM_001199290	100526832		NM_001199290	ENSG00000213160	PHOSPHO2-KLHL23	-	PHOSPHO2-KLHL23 readthrough	protein-coding
205779	chr7	23544801	23545600	+	0	NA	Intergenic	L2|LINE|L2	-13159	NM_001282757	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
71172	chr14	105043971	105044130	+	0	NA	Intergenic	L1MC4|LINE|L1	21380	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
38891	chr11	47398071	47398430	+	0	NA	Intergenic	Intergenic	-2720	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
194164	chr6	32094851	32095150	+	0	NA	intron (NM_019105, intron 4 of 43).4	intron (NM_019105, intron 4 of 43).4	14338	NM_019105	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
38405	chr11	44949021	44950100	+	0	NA	intron (NM_001258323, intron 1 of 7)	CpG	600	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
42877	chr11	73321721	73322650	+	0	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	-12824	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
64897	chr14	35394271	35394630	+	0	NA	Intergenic	Intergenic	10299	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
82009	chr16	11917171	11917330	+	0	NA	promoter-TSS (NM_001130007)	promoter-TSS (NM_001130007)	-596	NM_001130007	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
72576	chr15	34587851	34588430	+	0	NA	Intergenic	Intergenic	-4489	NM_001023567	440270		NM_001023567	ENSG00000215252	GOLGA8B	GOLGA5	golgin A8 family member B	protein-coding
27012	chr10	26834671	26835400	+	0	NA	intron (NR_145410, intron 1 of 11)	AluSz|SINE|Alu	25923	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
183699	chr5	80934871	80935030	+	0	NA	Intergenic	Intergenic	-25413	NM_006909	5924		NM_006909	ENSG00000113319	RASGRF2	GRF2|RAS-GRF2	Ras protein specific guanine nucleotide releasing factor 2	protein-coding
106541	chr18	21595621	21595880	+	0	NA	intron (NM_052911, intron 1 of 11)	AluY|SINE|Alu	4954	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
216040	chr8	9653301	9653700	+	0	NA	intron (NM_003747, intron 3 of 26)	MSTB2|LTR|ERVL-MaLR	-88172	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
215995	chr8	8889271	8889630	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	4180	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
62587	chr13	99992001	99992400	+	0	NA	Intergenic	Intergenic	5709	NR_047483	100861542		NR_047483	ENSG00000260738	LINC00554	lncZic2	long intergenic non-protein coding RNA 554	ncRNA
173444	chr4	8240471	8241030	+	0	NA	non-coding (NR_134639, exon 15 of 15)	non-coding (NR_134639, exon 15 of 15)	-29004	NM_053044	94031		NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
38198	chr11	36384771	36385600	+	0	NA	intron (NM_024841, intron 2 of 9)	intron (NM_024841, intron 2 of 9)	9200	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
122617	chr19	49805551	49806080	+	0	NA	intron (NM_014203, intron 21 of 23)	intron (NM_014203, intron 21 of 23)	7477	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
131250	chr2	96014021	96014280	+	0	NA	intron (NR_003698, intron 1 of 3)	MIR3|SINE|MIR	3599	NR_003698	729234		NR_003698		FAHD2CP	-	fumarylacetoacetate hydrolase domain containing 2C, pseudogene	pseudo
84775	chr16	30995521	30995780	+	0	NA	intron (NM_052874, intron 7 of 9)	AluSx|SINE|Alu	10443	NM_001142778	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
148827	chr21	8386701	8387150	+	0	NA	intron (NR_038958, intron 2 of 6).2	AluSp|SINE|Alu	-1437	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
122789	chr19	50328371	50329750	+	0	NA	promoter-TSS (NM_001372305)	promoter-TSS (NM_001372305)	11	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
21279	chr1	204409051	204410100	+	0	NA	exon (NM_032833, exon 1 of 2)	exon (NM_032833, exon 1 of 2)	2242	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
113806	chr19	10576801	10577000	+	0	NA	intron (NM_001300887, intron 9 of 11)	AluJb|SINE|Alu	-7921	NM_079421	1032		NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
25271	chr10	6129751	6130650	+	0	NA	Intergenic	Intergenic	-14721	NR_136554	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
115145	chr19	14395111	14395700	+	0	NA	intron (NM_001784, intron 4 of 17)	intron (NM_001784, intron 4 of 17)	13961	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
19996	chr1	185238151	185238780	+	0	NA	intron (NM_017673, intron 16 of 18)	MER5A|DNA|hAT-Charlie	78778	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
30412	chr10	78973251	78974250	+	0	NA	intron (NR_015429, intron 3 of 7)	CpG	93698	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
134901	chr2	149506771	149506950	+	0	NA	Intergenic	L1PA4|LINE|L1	-80498	NR_110240	101929231		NR_110240	ENSG00000231969	MMADHC-DT	-	MMADHC divergent transcript	ncRNA
199868	chr6	127798251	127798350	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	56888	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
83864	chr16	28905101	28905780	+	0	NA	TTS (NM_004320)	TTS (NM_004320)	19798	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
220111	chr8	94574021	94574430	+	0	NA	Intergenic	FRAM|SINE|Alu	-20707	NM_183009	25962		NM_015496	ENSG00000164944	VIRMA	KIAA1429|MSTP054|fSAP121	vir like m6A methyltransferase associated	protein-coding
84614	chr16	30694971	30695580	+	0	NA	Intergenic	L2c|LINE|L2	3196	NM_001256932	730183		NM_001256932	ENSG00000261840	LOC730183	-	uncharacterized LOC730183	ncRNA
197701	chr6	85671421	85672530	+	0	NA	Intergenic	AluSc|SINE|Alu	5393	NR_002743	26799		NR_002743		SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
70222	chr14	100641921	100642500	+	0	NA	Intergenic	Intergenic	-15058	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
97016	chr17	42300071	42300730	+	0	NA	intron (NM_001288719, intron 6 of 17)	intron (NM_001288719, intron 6 of 17)	12344	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
150743	chr21	43764501	43764700	+	0	NA	Intergenic	Intergenic	11708	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
63548	chr14	20310051	20310380	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-4264	NM_138376	91875		NM_138376	ENSG00000136319	TTC5	NEDCAFD|Strap	tetratricopeptide repeat domain 5	protein-coding
221509	chr8	124612221	124612480	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	73227	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
111967	chr19	4837621	4838080	+	0	NA	TTS (NM_001164189)	TTS (NM_001164189)	-6138	NM_001385678	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
180270	chr5	1790221	1790480	+	0	NA	Intergenic	Intergenic	9487	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
125927	chr2	25129101	25130200	+	0	NA	intron (NM_014971, intron 6 of 22)	intron (NM_014971, intron 6 of 22)	38930	NM_000939	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
134651	chr2	144446051	144446150	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-73514	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
186802	chr5	139377401	139377800	+	0	NA	intron (NM_152685, intron 12 of 14)	intron (NM_152685, intron 12 of 14)	5697	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
224060	chr9	3529851	3530480	+	0	NA	Intergenic	Intergenic	-4164	NM_134428	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
43923	chr11	90249751	90250250	+	0	NA	Intergenic	AluSz|SINE|Alu	-1232	NR_104190	101929222		NR_104190	ENSG00000261645	DISC1FP1	Boymaw	DISC1 fusion partner 1	ncRNA
15850	chr1	151402951	151403750	+	0	NA	3' UTR (NM_145796, exon 17 of 17)	3' UTR (NM_145796, exon 17 of 17)	3777	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
43892	chr11	88367271	88367680	+	0	NA	Intergenic	Intergenic	-29739	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
66604	chr14	63641211	63642780	+	0	NA	promoter-TSS (NM_001382424)	promoter-TSS (NM_001382424)	-124	NM_001382426	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
199896	chr6	127856501	127856700	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-1412	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
120785	chr19	45442371	45443200	+	0	NA	intron (NM_001369412, intron 1 of 9)	intron (NM_001369412, intron 1 of 9)	6131	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
146356	chr20	49259051	49259550	+	0	NA	intron (NM_021035, intron 7 of 13)	L1ME3D|LINE|L1	18757	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
134378	chr2	136309951	136310450	+	0	NA	Intergenic	Intergenic	-192051	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
157021	chr22	42549651	42550150	+	0	NA	Intergenic	Intergenic	-4056	NR_104301	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
160311	chr3	27481701	27482600	+	0	NA	intron (NR_135544, intron 1 of 24)	intron (NR_135544, intron 1 of 24)	2234	NR_135543	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
148545	chr20	64192971	64193330	+	0	NA	intron (NM_004535, intron 2 of 22)	intron (NM_004535, intron 2 of 22)	28698	NM_004535	4661		NM_004535	ENSG00000196132	MYT1	C20orf36|MTF1|MYTI|NZF2|PLPB1|ZC2H2C1|ZC2HC4A	myelin transcription factor 1	protein-coding
103004	chr17	76816321	76816900	+	0	NA	Intergenic	Intergenic	17566	NR_110837	101928514		NR_110837	ENSG00000267065	LINC02080	-	long intergenic non-protein coding RNA 2080	ncRNA
223550	chr8	144209751	144210050	+	0	NA	intron (NM_032450, intron 12 of 43)	AluJb|SINE|Alu	52837	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
238350	chrX	149573371	149573780	+	0	NA	Intergenic	L1MCb|LINE|L1	13877	NM_005365	4108		NM_005365	ENSG00000123584	MAGEA9	CT1.9|MAGE9	MAGE family member A9	protein-coding
177213	chr4	108466221	108466480	+	0	NA	Intergenic	Intergenic	-90883	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
132532	chr2	106158501	106159300	+	0	NA	intron (NR_165308, intron 4 of 14)	LTR8B|LTR|ERV1	1737	NM_001377506	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
103331	chr17	77987951	77988450	+	0	NA	Intergenic	AluJr|SINE|Alu	-16037	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
53757	chr12	68666471	68667030	+	0	NA	3' UTR (NM_015646, exon 8 of 8)	3' UTR (NM_015646, exon 8 of 8)	20109	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
95237	chr17	35348001	35348600	+	0	NA	Intergenic	AluSz6|SINE|Alu	25321	NM_001376010	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
45761	chr11	119239021	119239280	+	0	NA	intron (NM_005188, intron 2 of 15)	AluJb|SINE|Alu	32811	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
41769	chr11	66743171	66743700	+	0	NA	Intergenic	Intergenic	-1301	NM_024650	79703		NM_024650	ENSG00000173715	TOP6BL	C11orf80|HYDM4|TOPOVIBL	TOP6B like initiator of meiotic double strand breaks	protein-coding
184025	chr5	91318701	91319050	+	0	NA	Intergenic	AluSp|SINE|Alu	-4473	NR_103548	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
18870	chr1	167942201	167942800	+	0	NA	intron (NM_001349780, intron 1 of 17)	L1M4|LINE|L1	-5428	NM_001143674	25874		NM_015415	ENSG00000143158	MPC2	BRP44|SLC54A2	mitochondrial pyruvate carrier 2	protein-coding
177982	chr4	139172271	139172880	+	0	NA	intron (NM_001371324, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	4643	NM_001371339	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
185423	chr5	131069021	131069980	+	0	NA	Intergenic	Intergenic	95756	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
194505	chr6	33281101	33281500	+	0	NA	intron (NM_005452, intron 10 of 14).5	intron (NM_005452, intron 10 of 14).5	4177	NM_003782	8705		NM_003782	ENSG00000235863	B3GALT4	BETA3GALT4|GALT2|GALT4	beta-1,3-galactosyltransferase 4	protein-coding
210936	chr7	101246801	101247000	+	0	NA	Intergenic	Intergenic	-1819	NM_016068	51024		NM_016068	ENSG00000214253	FIS1	CGI-135|TTC11	fission, mitochondrial 1	protein-coding
41538	chr11	66285301	66285900	+	0	NA	intron (NM_020470, intron 5 of 7)	intron (NM_020470, intron 5 of 7)	3543	NM_001300861	10897		NM_020470	ENSG00000174851	YIF1A	54TM|FinGER7|YIF1|YIF1P	Yip1 interacting factor homolog A, membrane trafficking protein	protein-coding
28251	chr10	45593201	45593530	+	0	NA	intron (NM_145021, intron 1 of 6)	intron (NM_145021, intron 1 of 6)	1541	NM_145021	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
107853	chr18	54714671	54715030	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-3007	NM_001375327	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
9673	chr1	52701821	52702230	+	0	NA	Intergenic	L1ME1|LINE|L1	-3678	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
192386	chr6	24720001	24720400	+	0	NA	Intergenic	Intergenic	-1046	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
181646	chr5	50325301	50325580	+	0	NA	Intergenic	Intergenic	115848	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
113587	chr19	10275651	10275950	+	0	NA	intron (NM_000201, intron 2 of 6)	AluY|SINE|Alu	4680	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
10839	chr1	77953501	77953700	+	0	NA	intron (NR_146539, intron 18 of 22)	intron (NR_146539, intron 18 of 22)	25472	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
180543	chr5	14634151	14634530	+	0	NA	Intergenic	Intergenic	18042	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
99133	chr17	49258771	49258930	+	0	NA	TTS (NR_034161)	TTS (NR_034161)	10607	NR_034161	124871		NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	ncRNA
147020	chr20	53590501	53590850	+	0	NA	intron (NM_006526, intron 1 of 5)	intron (NM_006526, intron 1 of 5)	3164	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
200878	chr6	138953621	138954080	+	0	NA	intron (NM_031922, intron 1 of 19)	L1MA5A|LINE|L1	34403	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
20097	chr1	186828851	186829150	+	0	NA	promoter-TSS (NM_001311193)	promoter-TSS (NM_001311193)	51	NM_024420	5321		NM_024420	ENSG00000116711	PLA2G4A	GURDP|PLA2G4|cPLA2|cPLA2-alpha	phospholipase A2 group IVA	protein-coding
104155	chr17	80392851	80393150	+	0	NA	intron (NM_001256071, intron 67 of 67)	AluJb|SINE|Alu	-22167	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
101476	chr17	67478851	67479350	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-7515	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
67235	chr14	68962321	68962780	+	0	NA	intron (NM_001130004, intron 1 of 21)	L3|LINE|CR1	16752	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
178833	chr4	153615671	153616200	+	0	NA	intron (NM_015196, intron 26 of 34)	intron (NM_015196, intron 26 of 34)	-24233	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
70675	chr14	103086171	103086330	+	0	NA	intron (NM_001330236, intron 2 of 3)	AluSx1|SINE|Alu	2040	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
197639	chr6	83853301	83853900	+	0	NA	promoter-TSS (NR_103525)	promoter-TSS (NR_103525)	-5	NR_103525	134701		NM_001009994	ENSG00000203877	RIPPLY2	C6orf159|SCDO6|dJ237I15.1	ripply transcriptional repressor 2	protein-coding
181990	chr5	55224121	55224630	+	0	NA	intron (NM_001190787, intron 3 of 6)	intron (NM_001190787, intron 3 of 6)	2940	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
46845	chr11	133831351	133831680	+	0	NA	Intergenic	Intergenic	13998	NM_174927	219938		NM_174927	ENSG00000166118	SPATA19	CT132|SPAS1|spergen1	spermatogenesis associated 19	protein-coding
153481	chr22	26331001	26331230	+	0	NA	intron (NM_001184775, intron 9 of 15)	intron (NM_001184775, intron 9 of 15)	-98145	NM_020437	57168		NM_020437	ENSG00000128203	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
50184	chr12	46071901	46072480	+	0	NA	Intergenic	Intergenic	-81616	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
11143	chr1	86741971	86742380	+	0	NA	intron (NM_001206652, intron 9 of 10)	intron (NM_001206652, intron 9 of 10)	37599	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
165293	chr3	80770201	80770680	+	0	NA	promoter-TSS (NR_147145)	promoter-TSS (NR_147145)	-264	NR_147145	105377175		NR_147143	ENSG00000242781	LINC02050	-	long intergenic non-protein coding RNA 2050	ncRNA
70714	chr14	103337071	103337430	+	0	NA	promoter-TSS (NR_002964)	promoter-TSS (NR_002964)	-599	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
3791	chr1	16707201	16708530	+	0	NA	intron (NR_026567, intron 2 of 10)	CpG-527	12292	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
29505	chr10	70607071	70607230	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-4362	NM_005041	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
82663	chr16	19553701	19554150	+	0	NA	TTS (NM_014711)	TTS (NM_014711)	-1778	NM_001365293	57020		NM_020314	ENSG00000103544	VPS35L	C16orf62|EC97|RTSC3	VPS35 endosomal protein sorting factor like	protein-coding
37497	chr11	18405521	18406380	+	0	NA	intron (NM_005566, intron 7 of 7)	intron (NM_005566, intron 7 of 7)	-6356	NM_002301	3948		NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
143480	chr20	31062821	31063350	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-194579	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
170681	chr3	187746671	187747180	+	0	NA	Intergenic	Intergenic	-1457	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
38356	chr11	44595901	44596130	+	0	NA	intron (NM_002231, intron 3 of 9)	intron (NM_002231, intron 3 of 9)	30352	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
61000	chr13	47904251	47904350	+	0	NA	Intergenic	MER57B2|LTR|ERV1	28322	NR_047492	100861549		NR_047492	ENSG00000260388	LINC00562	-	long intergenic non-protein coding RNA 562	ncRNA
203207	chr6	167825251	167825950	+	0	NA	promoter-TSS (NM_001366319)	promoter-TSS (NM_001366319)	-964	NM_001366320	4301		NM_005936	ENSG00000130396	AFDN	AF6|MLL-AF6|MLLT4|l-afadin	afadin, adherens junction formation factor	protein-coding
133209	chr2	113166901	113167700	+	0	NA	Intergenic	Intergenic	-6671	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
2441	chr1	9624451	9624950	+	0	NA	Intergenic	AluY|SINE|Alu	-27031	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
167730	chr3	131041971	131042650	+	0	NA	intron (NM_001353038, intron 4 of 18)	L1P3|LINE|L1	14582	NM_001321223	79858		NM_024800	ENSG00000114670	NEK11	-	NIMA related kinase 11	protein-coding
85984	chr16	57418651	57419480	+	0	NA	Intergenic	Intergenic	14298	NM_002987	6361		NM_002987	ENSG00000102970	CCL17	A-152E5.3|ABCD-2|SCYA17|TARC	C-C motif chemokine ligand 17	protein-coding
139558	chr2	224925721	224926680	+	0	NA	intron (NM_001363762, intron 2 of 55)	intron (NM_001363762, intron 2 of 55)	20849	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
199437	chr6	117464371	117464730	+	0	NA	Intergenic	L1MD1|LINE|L1	-18054	NM_173674	285761		NM_173674	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
24997	chr10	3174451	3175050	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1909	NM_001242307	10531		NM_014889	ENSG00000107959	PITRM1	MP1|PreP|SCAR30	pitrilysin metallopeptidase 1	protein-coding
225242	chr9	34225901	34226450	+	0	NA	intron (NM_001171202, intron 2 of 5)	AluJr4|SINE|Alu	47132	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
174689	chr4	41994621	41995300	+	0	NA	intron (NM_006345, intron 1 of 17)	intron (NM_006345, intron 1 of 17)	4430	NM_006345	10463		NM_006345	ENSG00000014824	SLC30A9	BILAPES|C4orf1|GAC63|HUEL|ZNT9	solute carrier family 30 member 9	protein-coding
179941	chr5	773271	773430	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	11379	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
171009	chr3	194767471	194767630	+	0	NA	intron (NR_146990, intron 2 of 2)	intron (NR_146990, intron 2 of 2)	1159	NR_146990	105374293		NR_146990	ENSG00000230401	LINC01972	-	long intergenic non-protein coding RNA 1972	ncRNA
12784	chr1	109738871	109739030	+	0	NA	intron (NR_024537, intron 3 of 7)	AluJb|SINE|Alu	2088	NR_024537	2947		NM_000849	ENSG00000134202	GSTM3	GST5|GSTB|GSTM3-3|GSTM3TV2|GTM3|hGSTM3-3	glutathione S-transferase mu 3	protein-coding
127948	chr2	46544751	46544930	+	0	NA	intron (NM_012249, intron 2 of 4)	MIRb|SINE|MIR	-2263	NM_001371283	90423		NM_080653	ENSG00000250565	ATP6V1E2	ATP6E1|ATP6EL2|ATP6V1EL2|VMA4	ATPase H+ transporting V1 subunit E2	protein-coding
118471	chr19	35894751	35895050	+	0	NA	intron (NM_001365706, intron 9 of 9)	AluSp|SINE|Alu	4837	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
13570	chr1	116020701	116020900	+	0	NA	exon (NM_018420, exon 4 of 12)	exon (NM_018420, exon 4 of 12)	-43524	NR_125970	101928977		NR_125970		LOC101928977	-	uncharacterized LOC101928977	ncRNA
138423	chr2	205679951	205680250	+	0	NA	Intergenic	Intergenic	-2400	NM_201264	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
201424	chr6	147103671	147103830	+	0	NA	intron (NR_034115, intron 4 of 10)	intron (NR_034115, intron 4 of 10)	-55175	NR_132442	106182249		NR_132442	ENSG00000196634	LUADT1	-	lung adenocarcinoma associated transcript 1	ncRNA
190880	chr6	2423171	2423550	+	0	NA	Intergenic	L1HS|LINE|L1	177607	NR_046229	100508120		NR_046229	ENSG00000250903	GMDS-DT	GMDS-AS1	GMDS divergent transcript	ncRNA
87372	chr16	70429801	70430000	+	0	NA	intron (NM_006927, intron 1 of 6)	AluSq2|SINE|Alu	9200	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
183970	chr5	88684501	88684700	+	0	NA	intron (NR_146284, intron 1 of 3)	intron (NR_146284, intron 1 of 3)	225	NR_152236	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
174560	chr4	40219751	40220630	+	0	NA	intron (NM_001278360, intron 2 of 3)	intron (NM_001278360, intron 2 of 3)	23159	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
162530	chr3	48607221	48608150	+	0	NA	intron (NM_003365, intron 2 of 12)	AluJo|SINE|Alu	1961	NM_003365	7384		NM_003365	ENSG00000010256	UQCRC1	D3S3191|PKNPY|QCR1|UQCR1	ubiquinol-cytochrome c reductase core protein 1	protein-coding
52292	chr12	54590951	54591450	+	0	NA	Intergenic	Intergenic	-2541	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
103496	chr17	78385071	78385230	+	0	NA	intron (NR_111989, intron 1 of 8)	AluSx1|SINE|Alu	6501	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
87901	chr16	78893421	78893930	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	707062	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
28948	chr10	63221771	63222630	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	47023	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
106325	chr18	12944621	12945130	+	0	NA	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-3109	NM_031216	81929		NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
191115	chr6	4026271	4027230	+	0	NA	intron (NR_146785, intron 1 of 20)	L2a|LINE|L2	5450	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
233839	chrX	1500621	1501580	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	36085	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
215482	chr7	158339721	158340180	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	192863	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
103837	chr17	79554421	79554680	+	0	NA	intron (NM_001350453, intron 1 of 13)	intron (NM_001350453, intron 1 of 13)	-38402	NM_001082575	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
132655	chr2	108737571	108738730	+	0	NA	intron (NM_006267, intron 6 of 28)	AluY|SINE|Alu	18668	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
36240	chr11	3746701	3746900	+	0	NA	intron (NR_157590, intron 11 of 31)	AluSp|SINE|Alu	50746	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
53277	chr12	64193071	64193230	+	0	NA	3' UTR (NM_152440, exon 3 of 3)	3' UTR (NM_152440, exon 3 of 3)	29146	NM_152440	144577		NM_152440	ENSG00000174206	KICS2	C12orf66	KICSTOR subunit 2	protein-coding
137732	chr2	197806271	197806850	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	1967	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
76563	chr15	75220771	75220930	+	0	NA	Intergenic	Intergenic	8840	NM_001321990	105376731		NM_001321990	ENSG00000293502	LOC105376731	-	taste receptor cell protein 1-like	pseudo
194932	chr6	35146421	35146680	+	0	NA	Intergenic	Intergenic	-5140	NM_001261818	6954		NM_018679	ENSG00000124678	TCP11	D6S230E|FPPR	t-complex 11	protein-coding
218255	chr8	42169621	42170080	+	0	NA	3' UTR (NM_001134296, exon 10 of 10)	3' UTR (NM_001134296, exon 10 of 10)	16787	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
160817	chr3	33030221	33031280	+	0	NA	intron (NM_000404, intron 10 of 15)	intron (NM_000404, intron 10 of 15)	66082	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
32536	chr10	103129401	103129880	+	0	NA	intron (NM_001351176, intron 2 of 17)	SVA_F|Retroposon|SVA	24181	NM_001351191	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
23638	chr1	230632351	230632550	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-10031	NM_007357	22796		NM_007357	ENSG00000135775	COG2	CDG2Q|LDLC	component of oligomeric golgi complex 2	protein-coding
132905	chr2	111407771	111408200	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	-86894	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
164319	chr3	57755321	57757580	+	0	NA	promoter-TSS (NM_001304421)	promoter-TSS (NM_001304421)	141	NM_001377559	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
31132	chr10	89426171	89426600	+	0	NA	Intergenic	Intergenic	11817	NM_012420	24138		NM_012420	ENSG00000152778	IFIT5	ISG58|P58|RI58	interferon induced protein with tetratricopeptide repeats 5	protein-coding
158577	chr3	4587071	4587800	+	0	NA	intron (NM_002222, intron 4 of 57)	AluSx|SINE|Alu	94087	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
167366	chr3	128782101	128782500	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	56117	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
198185	chr6	96521271	96522680	+	0	NA	intron (NM_015323, intron 1 of 18)	CpG	169	NM_015323	23376		NM_015323	ENSG00000014123	UFL1	KIAA0776|Maxer|NLBP|RCAD	UFM1 specific ligase 1	protein-coding
28771	chr10	62046201	62047300	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-2607	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
205746	chr7	23503971	23504650	+	0	NA	TTS (NM_001282758)	TTS (NM_001282758)	13922	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
227198	chr9	87974201	87975150	+	0	NA	promoter-TSS (NM_001170639)	promoter-TSS (NM_001170639)	105	NM_001170640	23552		NM_012119	ENSG00000156345	CDK20	CCRK|CDCH|P42|PNQALRE	cyclin dependent kinase 20	protein-coding
174717	chr4	42646721	42647330	+	0	NA	intron (NM_001105529, intron 1 of 35)	intron (NM_001105529, intron 1 of 35)	10080	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
144126	chr20	34001171	34001630	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-7033	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
52561	chr12	56155101	56155300	+	0	NA	intron (NM_001199629, intron 4 of 7)	intron (NM_001199629, intron 4 of 7)	2613	NM_002475	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
75336	chr15	65383601	65383800	+	0	NA	3' UTR (NM_020962, exon 20 of 20)	3' UTR (NM_020962, exon 20 of 20)	-5698	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
200657	chr6	137047001	137047200	+	0	NA	Intergenic	LTR50|LTR|ERVL	-1920	NM_014432	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
130659	chr2	86196921	86197550	+	0	NA	Intergenic	Intergenic	-1465	NM_001100170	10989		NM_006839	ENSG00000132305	IMMT	HMP|MICOS60|MINOS2|Mic60|P87|P87/89|P89|PIG4|PIG52	inner membrane mitochondrial protein	protein-coding
188777	chr5	157718401	157718850	+	0	NA	Intergenic	L1MC4|LINE|L1	-12795	NM_001317825	54974		NM_017872	ENSG00000113272	THG1L	ICF45|IHG-1|IHG1|SCAR28|THG1|hTHG1	tRNA-histidine guanylyltransferase 1 like	protein-coding
161252	chr3	39249001	39250030	+	0	NA	Intergenic	Intergenic	30521	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
94484	chr17	29279471	29279900	+	0	NA	intron (NM_020772, intron 2 of 3)	AluJo|SINE|Alu	14463	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
3966	chr1	18666651	18666950	+	0	NA	intron (NM_001135254, intron 4 of 8)	intron (NM_001135254, intron 4 of 8)	35954	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
192501	chr6	24997301	24997500	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	44888	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
49834	chr12	32305121	32305380	+	0	NA	intron (NR_148725, intron 3 of 9)	intron (NR_148725, intron 3 of 9)	-94308	NM_001384126	121512		NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
165688	chr3	101925351	101925450	+	0	NA	Intergenic	L1PA7|LINE|L1	-15459	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
148321	chr20	63748151	63748930	+	0	NA	intron (NM_025224, intron 4 of 4)	intron (NM_025224, intron 4 of 4)	8764	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
84255	chr16	30019421	30019880	+	0	NA	Intergenic	Intergenic	-3548	NM_001353379	146378		NM_001109659	ENSG00000167194	C16orf92	FIMP	chromosome 16 open reading frame 92	protein-coding
127589	chr2	42808171	42808330	+	0	NA	Intergenic	Intergenic	-15667	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
168603	chr3	149273121	149273460	+	0	NA	Intergenic	Intergenic	-51461	NM_000096	1356		NM_000096	ENSG00000047457	CP	AB073614|CP-2	ceruloplasmin	protein-coding
156969	chr22	42439001	42439200	+	0	NA	Intergenic	Intergenic	-1114	NM_001371362	150372		NM_145912	ENSG00000235568	NFAM1	CNAIP	NFAT activating protein with ITAM motif 1	protein-coding
33591	chr10	119511951	119512650	+	0	NA	intron (NM_002925, intron 4 of 4)	intron (NM_002925, intron 4 of 4)	24233	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
25751	chr10	9301751	9302350	+	0	NA	Intergenic	Intergenic	-6457	NR_120635	101928272		NR_120635		LOC101928272	-	uncharacterized LOC101928272	ncRNA
21759	chr1	206907921	206908180	+	0	NA	intron (NM_001193338, intron 6 of 6)	intron (NM_001193338, intron 6 of 6)	10607	NM_006850	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
167398	chr3	128953871	128954230	+	0	NA	intron (NM_001348520, intron 8 of 14)	SVA_F|Retroposon|SVA	37847	NM_001348523	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
130909	chr2	87465351	87465900	+	0	NA	intron (NR_024206, intron 1 of 1)	intron (NR_024206, intron 1 of 1)	-4325	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
44430	chr11	104653251	104653730	+	0	NA	Intergenic	Intergenic	-44188	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
48261	chr12	8609051	8609380	+	0	NA	intron (NM_020661, intron 1 of 4)	intron (NM_020661, intron 1 of 4)	3644	NM_020661	57379		NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HEL-S-284|HIGM2	activation induced cytidine deaminase	protein-coding
98737	chr17	48029151	48029250	+	0	NA	intron (NM_016429, intron 6 of 8)	intron (NM_016429, intron 6 of 8)	-3682	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
200907	chr6	139131401	139131600	+	0	NA	Intergenic	Intergenic	-3580	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
99880	chr17	56658871	56659030	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	65251	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
237051	chrX	103304851	103305030	+	0	NA	Intergenic	L1MEc|LINE|L1	6015	NM_001168399	84707		NM_032621	ENSG00000133134	BEX2	BEX1|DJ79P11.1	brain expressed X-linked 2	protein-coding
233765	chrX	1411371	1412380	+	0	NA	intron (NR_026710, intron 3 of 3)	AluSx1|SINE|Alu	11344	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
158320	chr22	50434301	50434930	+	0	NA	intron (NM_001351641, intron 12 of 23)	intron (NM_001351641, intron 12 of 23)	27173	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
110028	chr19	1453121	1453580	+	0	NA	intron (NM_005883, intron 3 of 14)	intron (NM_005883, intron 3 of 14)	366	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
86676	chr16	67503871	67505000	+	0	NA	Intergenic	Intergenic	-20888	NM_001138	181		NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related neuropeptide	protein-coding
182021	chr5	55420921	55421250	+	0	NA	intron (NM_015360, intron 25 of 26)	intron (NM_015360, intron 25 of 26)	87841	NR_049869	100847019		NR_049869	ENSG00000265135	MIR5687	-	microRNA 5687	ncRNA
80547	chr16	2786501	2787180	+	0	NA	intron (NM_001385464, intron 1 of 6)	intron (NM_001385464, intron 1 of 6)	720	NM_001385462	260429		NM_152891	ENSG00000103355	PRSS33	EOS	serine protease 33	protein-coding
89658	chr16	89356671	89357650	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	36708	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
227166	chr9	86666751	86666850	+	0	NA	Intergenic	Intergenic	280706	NM_002048	2619		NM_002048	ENSG00000180447	GAS1	-	growth arrest specific 1	protein-coding
30635	chr10	80448421	80448830	+	0	NA	Intergenic	Intergenic	-5685	NM_001351267	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
56459	chr12	115917001	115917480	+	0	NA	Intergenic	CpG	231414	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
168953	chr3	152376421	152376680	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-35560	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
67313	chr14	69615521	69616650	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	4489	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
15418	chr1	150259271	150259430	+	0	NA	intron (NM_012113, intron 1 of 10)	intron (NM_012113, intron 1 of 10)	1576	NM_012113	23632		NM_012113	ENSG00000118298	CA14	CAXiV	carbonic anhydrase 14	protein-coding
164013	chr3	53192071	53192230	+	0	NA	exon (NM_001354678, exon 18 of 18)	exon (NM_001354678, exon 18 of 18)	23447	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
127660	chr2	43165351	43166480	+	0	NA	Intergenic	Intergenic	60691	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
101449	chr17	67447001	67447550	+	0	NA	intron (NM_181671, intron 1 of 9)	LTR32|LTR|ERVL	-24214	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
165415	chr3	97991071	97991900	+	0	NA	intron (NR_047685, intron 9 of 9)	intron (NR_047685, intron 9 of 9)	-19034	NM_001042533	84864		NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
231447	chr9	131265351	131265530	+	0	NA	intron (NM_033387, intron 1 of 1)	AluSq2|SINE|Alu	11070	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
224119	chr9	4664251	4664350	+	0	NA	3' UTR (NM_203453, exon 1 of 1)	3' UTR (NM_203453, exon 1 of 1)	2006	NM_203453	403313		NM_203453	ENSG00000205808	PLPP6	LPRP-B|PA-PSP|PDP1|PPAPDC2|PSDP|bA6J24.6	phospholipid phosphatase 6	protein-coding
93361	chr17	18235701	18236700	+	0	NA	intron (NM_004140, intron 11 of 22)	intron (NM_004140, intron 11 of 22)	10565	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
216454	chr8	19557771	19558130	+	0	NA	intron (NM_001354497, intron 1 of 7)	intron (NM_001354497, intron 1 of 7)	44595	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
226401	chr9	70410401	70410600	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	4157	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
168704	chr3	150636371	150636530	+	0	NA	Intergenic	Intergenic	33129	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
33262	chr10	114512071	114512230	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	14763	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
68848	chr14	91292201	91292650	+	0	NA	intron (NM_001080414, intron 23 of 29)	intron (NM_001080414, intron 23 of 29)	-38545	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
171303	chr3	195956801	195957000	+	0	NA	Intergenic	Intergenic	33379	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
181679	chr5	50447101	50447300	+	0	NA	Intergenic	L1M1|LINE|L1	-5912	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
88564	chr16	85550821	85552050	+	0	NA	Intergenic	Intergenic	-59974	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
173050	chr4	5705521	5706180	+	0	NA	intron (NM_001166136, intron 1 of 21)	Charlie1b|DNA|hAT-Charlie	2709	NM_147127	132884		NM_147127	ENSG00000173040	EVC2	LBN|WAD	EvC ciliary complex subunit 2	protein-coding
159984	chr3	18215601	18215800	+	0	NA	intron (NR_161333, intron 4 of 4)	MLT1A|LTR|ERVL-MaLR	209639	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
111355	chr19	3671771	3672600	+	0	NA	intron (NM_001300849, intron 1 of 16)	MIRc|SINE|MIR	28283	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
213236	chr7	133853701	133854100	+	0	NA	intron (NM_021807, intron 11 of 17)	intron (NM_021807, intron 11 of 17)	-29012	NR_120513	101928861		NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
102151	chr17	75109301	75110850	+	0	NA	5' UTR (NM_001304273, exon 1 of 3)	5' UTR (NM_001304273, exon 1 of 3)	106	NM_001304273	79637		NM_024585	ENSG00000125449	ARMC7	-	armadillo repeat containing 7	protein-coding
128152	chr2	48438601	48439000	+	0	NA	Intergenic	Intergenic	-1966	NM_001135629	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
177495	chr4	114147601	114148200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-168253	NM_024590	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
20327	chr1	197725151	197725330	+	0	NA	intron (NR_125340, intron 2 of 19)	L1MEd|LINE|L1	50240	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
49017	chr12	14259371	14259530	+	0	NA	Intergenic	AluSx|SINE|Alu	-106182	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
75907	chr15	70083151	70083450	+	0	NA	intron (NM_001282982, intron 2 of 17)	intron (NM_001282982, intron 2 of 17)	-3832	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
39089	chr11	48008971	48010330	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	29091	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
175318	chr4	68326471	68326930	+	0	NA	intron (NM_001031732, intron 9 of 16)	AluSz6|SINE|Alu	23390	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
230002	chr9	126912851	126913500	+	0	NA	Intergenic	MIR|SINE|MIR	-1599	NM_001190729	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
214756	chr7	151069971	151070330	+	0	NA	intron (NM_001199692, intron 9 of 22)	(TGCCCT)n|Simple_repeat|Simple_repeat	7508	NM_001199694	6522		NM_003040	ENSG00000164889	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3|OPTB9	solute carrier family 4 member 2	protein-coding
34147	chr10	128056451	128056750	+	0	NA	intron (NM_001323354, intron 6 of 19)	intron (NM_001323354, intron 6 of 19)	5825	NR_136150	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
48592	chr12	10313671	10314030	+	0	NA	intron (NR_147039, intron 5 of 5)	intron (NR_147039, intron 5 of 5)	5980	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
68141	chr14	75538901	75539900	+	0	NA	intron (NM_006399, intron 2 of 2)	MLT1J|LTR|ERVL-MaLR	16931	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
121035	chr19	45812071	45812430	+	0	NA	intron (NM_030785, intron 1 of 5)	AluSz6|SINE|Alu	3058	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
103468	chr17	78340201	78340800	+	0	NA	Intergenic	Intergenic	19167	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
13621	chr1	116406001	116406600	+	0	NA	intron (NR_024124, intron 1 of 1)	intron (NR_024124, intron 1 of 1)	12259	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
73387	chr15	42574271	42574430	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-1256	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
139414	chr2	222653021	222653280	+	0	NA	intron (NM_005687, intron 1 of 16)	intron (NM_005687, intron 1 of 16)	2942	NM_005687	10056		NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC|RILDBC1|RJBS	phenylalanyl-tRNA synthetase subunit beta	protein-coding
118117	chr19	34676901	34678230	+	0	NA	promoter-TSS (NM_001012320)	promoter-TSS (NM_001012320)	-74	NM_001289186	55900		NM_018443	ENSG00000089335	ZNF302	HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327	zinc finger protein 302	protein-coding
158197	chr22	50242771	50242930	+	0	NA	intron (NM_020461, intron 1 of 24)	intron (NM_020461, intron 1 of 24)	2173	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
120553	chr19	44958071	44958250	+	0	NA	intron (NM_001294, intron 1 of 13)	L2a|LINE|L2	2780	NM_001294	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
173707	chr4	15755301	15755600	+	0	NA	Intergenic	L1ME4b|LINE|L1	-22878	NM_001775	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
19918	chr1	184382021	184382480	+	0	NA	Intergenic	AluY|SINE|Alu	-4779	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
112535	chr19	6523951	6524250	+	0	NA	Intergenic	AluSg7|SINE|Alu	-6926	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
97098	chr17	42455201	42455600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3478	NM_001378547	535		NM_005177	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|DEE104|NEDEBA|Stv1|VPP1|Vph1|a1	ATPase H+ transporting V0 subunit a1	protein-coding
137683	chr2	197478601	197479630	+	0	NA	Intergenic	AluSx3|SINE|Alu	7788	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
163309	chr3	50354221	50354730	+	0	NA	TTS (NM_007024)	TTS (NM_007024)	3613	NM_007022	11068		NM_007022	ENSG00000114395	CYB561D2	101F6|TSCytb|TSP10|XXcos-LUCA11.4	cytochrome b561 family member D2	protein-coding
121656	chr19	47489971	47490400	+	0	NA	intron (NR_038456, intron 9 of 11)	(TG)n|Simple_repeat|Simple_repeat	5903	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
123867	chr19	55266151	55267030	+	0	NA	intron (NM_001130106, intron 5 of 8)	(TCACCA)n|Simple_repeat|Simple_repeat	-7573	NM_014931	22870		NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding
55033	chr12	96388771	96389230	+	0	NA	intron (NM_002595, intron 1 of 16)	MSTB|LTR|ERVL-MaLR	11439	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
54948	chr12	96237621	96238730	+	0	NA	intron (NM_005230, intron 2 of 4)	intron (NM_005230, intron 2 of 4)	-17323	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
227578	chr9	92324921	92326230	+	0	NA	promoter-TSS (NM_001012267)	promoter-TSS (NM_001012267)	19	NM_001330722	55035		NM_017948	ENSG00000198000	NOL8	C9orf34|NOP132|bA62C3.3|bA62C3.4	nucleolar protein 8	protein-coding
221150	chr8	119648301	119648730	+	0	NA	intron (NM_001330600, intron 1 of 25)	intron (NM_001330600, intron 1 of 25)	-9676	NM_006209	5168		NM_006209	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
135393	chr2	160495251	160495580	+	0	NA	Intergenic	Intergenic	-1608	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
111187	chr19	3432671	3432830	+	0	NA	intron (NM_205843, intron 3 of 10)	AluY|SINE|Alu	47775	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
209483	chr7	76607651	76608550	+	0	NA	intron (NR_029411, intron 2 of 2)	AluSx1|SINE|Alu	19203	NM_012230	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
63376	chr13	114054001	114054550	+	0	NA	intron (NM_001320822, intron 2 of 23).2	L1M4|LINE|L1	23680	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
121906	chr19	48397951	48399220	+	0	NA	exon (NM_000836, exon 3 of 14)	exon (NM_000836, exon 3 of 14)	4917	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
207614	chr7	44985051	44985520	+	0	NA	TTS (NR_002952)	TTS (NR_002952)	225	NR_002952	677798		NR_002952	ENSG00000277184	SNORA9	ACA9|SNORA9A	small nucleolar RNA, H/ACA box 9	snoRNA
21925	chr1	207849151	207849750	+	0	NA	Intergenic	Intergenic	-26747	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
30533	chr10	79443201	79443400	+	0	NA	intron (NM_153367, intron 1 of 3)	intron (NM_153367, intron 1 of 3)	2324	NM_153367	219654		NM_153367	ENSG00000165424	ZCCHC24	C10orf56|Z3CXXC8	zinc finger CCHC-type containing 24	protein-coding
96442	chr17	40198121	40198880	+	0	NA	Intergenic	LTR12|LTR|ERV1	4903	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
72702	chr15	38612251	38612350	+	0	NA	Intergenic	Intergenic	-47486	NM_005739	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
79407	chr16	674471	674830	+	0	NA	TTS (NM_001352281)	TTS (NM_001352281)	-1021	NM_001278721	9028		NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	rhomboid like 1	protein-coding
215434	chr7	157685671	157686030	+	0	NA	intron (NM_130842, intron 11 of 21)	CpG	-111428	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
22040	chr1	210399501	210400000	+	0	NA	intron (NM_001170564, intron 4 of 9).2	intron (NM_001170564, intron 4 of 9).2	70384	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
4509	chr1	21774551	21774850	+	0	NA	intron (NM_001350166, intron 1 of 26)	AluSc|SINE|Alu	8449	NM_001350164	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
137784	chr2	199470671	199471030	+	0	NA	non-coding (NR_026830, exon 2 of 2)	non-coding (NR_026830, exon 2 of 2)	416	NM_015265	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
185561	chr5	131373101	131373680	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	109337	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
194984	chr6	35365821	35366080	+	0	NA	intron (NM_001171819, intron 2 of 6)	L2c|LINE|L2	23392	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
9372	chr1	47234601	47235000	+	0	NA	Intergenic	AluSc|SINE|Alu	-2465	NM_001290403	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
186314	chr5	134583571	134584600	+	0	NA	TTS (NM_015288)	TTS (NM_015288)	48743	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
51746	chr12	53254951	53255500	+	0	NA	TTS (NM_001170790)	TTS (NM_001170790)	3130	NM_032889	84975		NM_032889	ENSG00000182544	MFSD5	SLC61A1|hsMOT2	major facilitator superfamily domain containing 5	protein-coding
50048	chr12	44505001	44505200	+	0	NA	Intergenic	Intergenic	370561	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
54771	chr12	94147101	94147300	+	0	NA	Intergenic	Intergenic	-1377	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
196826	chr6	46410321	46410650	+	0	NA	intron (NM_001251974, intron 2 of 4)	intron (NM_001251974, intron 2 of 4)	80964	NM_001251974	10231		NM_005822	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
72348	chr15	31335851	31336730	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	9455	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
207713	chr7	47361871	47362030	+	0	NA	intron (NM_022748, intron 17 of 30)	intron (NM_022748, intron 17 of 30)	102853	NR_145813	109623468		NR_145813		SNORD151	-	small nucleolar RNA, C/D box 151	snoRNA
84133	chr16	29712751	29713050	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	33090	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
26446	chr10	17427321	17427580	+	0	NA	intron (NR_144322, intron 2 of 6)	intron (NR_144322, intron 2 of 6)	27145	NM_001345961	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
35548	chr11	1608121	1608380	+	0	NA	exon (NM_001012708, exon 1 of 1)	exon (NM_001012708, exon 1 of 1)	213	NM_001012708	387266		NM_001012708	ENSG00000196224	KRTAP5-3	KRTAP5-9|KRTAP5.3	keratin associated protein 5-3	protein-coding
130211	chr2	84652551	84653130	+	0	NA	intron (NM_001370, intron 33 of 76)	intron (NM_001370, intron 33 of 76)	136342	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
164278	chr3	57582651	57583450	+	0	NA	intron (NM_001660, intron 3 of 5)	MER20|DNA|hAT-Charlie	14294	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
98429	chr17	46816221	46816850	+	0	NA	intron (NM_030753, intron 1 of 4)	intron (NM_030753, intron 1 of 4)	2157	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
191054	chr6	3257521	3257780	+	0	NA	Intergenic	L1ME2|LINE|L1	-1297	NM_001135750	389362		NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
27243	chr10	29633051	29633550	+	0	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	1671	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
38116	chr11	35234401	35234800	+	0	NA	Intergenic	HAL1|LINE|L1	71650	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
15285	chr1	149810701	149811600	+	0	NA	TTS (NM_001024599)	TTS (NM_001024599)	1220	NM_001024599	440689		NM_001024599	ENSG00000203814	H2BC18	HIST2H2BF	H2B clustered histone 18	protein-coding
152958	chr22	22955571	22956350	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	68144	NM_001178126	100423062		NM_001178126	ENSG00000254709	IGLL5	IGL|IGLV|VL-MAR	immunoglobulin lambda like polypeptide 5	protein-coding
46933	chr11	134344521	134344780	+	0	NA	intron (NM_138342, intron 3 of 19)	intron (NM_138342, intron 3 of 19)	12662	NM_001370463	89944		NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	galactosidase beta 1 like 2	protein-coding
99775	chr17	51117701	51118080	+	0	NA	intron (NM_001130527, intron 1 of 29)	AluSx|SINE|Alu	2978	NM_001130527	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
178650	chr4	152419471	152420550	+	0	NA	intron (NM_001349798, intron 2 of 13)	Tigger1|DNA|TcMar-Tigger	-37481	NM_001013415	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
49059	chr12	14404971	14406400	+	0	NA	intron (NM_181352, intron 1 of 14)	AluJr4|SINE|Alu	20404	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
93495	chr17	18966801	18967200	+	0	NA	intron (NM_152351, intron 5 of 14)	MIRb|SINE|MIR	14835	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
93801	chr17	20473301	20473700	+	0	NA	Intergenic	Intergenic	-5965	NM_001042685	284194		NM_001042685	ENSG00000170298	LGALS9B	-	galectin 9B	protein-coding
99614	chr17	50552801	50553150	+	0	NA	intron (NM_022827, intron 14 of 16)	L2b|LINE|L2	5801	NM_022827	64847		NM_022827	ENSG00000006282	SPATA20	HEL-S-98|SSP411|Tisp78	spermatogenesis associated 20	protein-coding
155490	chr22	38512821	38513350	+	0	NA	Intergenic	AluSx|SINE|Alu	-6774	NM_001098504	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
115410	chr19	15291421	15291930	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-11224	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
105294	chr17	82495801	82496290	+	0	NA	Intergenic	Intergenic	-23687	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
145760	chr20	45311501	45312300	+	0	NA	exon (NM_001281448, exon 5 of 12)	exon (NM_001281448, exon 5 of 12)	-3371	NM_003833	8785		NM_003833	ENSG00000124159	MATN4	-	matrilin 4	protein-coding
71094	chr14	104875301	104875650	+	0	NA	intron (NM_001112726, intron 2 of 18)	intron (NM_001112726, intron 2 of 18)	10161	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
155761	chr22	39226251	39226550	+	0	NA	intron (NM_033016, intron 5 of 6)	MLT1H1|LTR|ERVL-MaLR	14509	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
145491	chr20	43941571	43941930	+	0	NA	intron (NM_001098796, intron 1 of 8)	intron (NM_001098796, intron 1 of 8)	-4146	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
152608	chr22	21408021	21408280	+	0	NA	Intergenic	AluJo|SINE|Alu	-9221	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
186087	chr5	134109171	134109330	+	0	NA	Intergenic	Intergenic	-5431	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
32404	chr10	102440551	102440850	+	0	NA	Intergenic	AluSc8|SINE|Alu	4188	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B|mir-146b	microRNA 146b	ncRNA
235992	chrX	54181121	54181500	+	0	NA	intron (NM_198456, intron 1 of 1)	intron (NM_198456, intron 1 of 1)	1944	NM_001300788	54954		NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120 member C	protein-coding
101065	chr17	64838671	64838830	+	0	NA	Intergenic	Intergenic	-1566	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
198357	chr6	105397921	105398650	+	0	NA	intron (NM_002726, intron 1 of 14)	intron (NM_002726, intron 1 of 14)	4797	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
178900	chr4	158253421	158253750	+	0	NA	3' UTR (NM_018342, exon 13 of 13)	3' UTR (NM_018342, exon 13 of 13)	43099	NM_018342	55314		NM_018342	ENSG00000164124	TMEM144	SLC35G7	transmembrane protein 144	protein-coding
132036	chr2	101000451	101001080	+	0	NA	Intergenic	AluY|SINE|Alu	-1464	NM_001098577	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
123438	chr19	54125901	54126300	+	0	NA	intron (NM_015629, intron 8 of 13)	MIRb|SINE|MIR	10346	NM_015629	26121		NM_015629	ENSG00000105618	PRPF31	NY-BR-99|PRP31|RP11|SNRNP61	pre-mRNA processing factor 31	protein-coding
93460	chr17	18778851	18779150	+	0	NA	exon (NM_001267586, exon 13 of 13)	exon (NM_001267586, exon 13 of 13)	-1995	NM_001316922	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
93108	chr17	17682201	17683930	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	1607	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
145517	chr20	44056021	44056380	+	0	NA	intron (NM_001098798, intron 5 of 7)	LTR16C|LTR|ERVL	110304	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
161350	chr3	40377451	40377550	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-9684	NM_001248	956		NM_001248	ENSG00000168032	ENTPD3	CD39L3|HB6|NTPDase-3	ectonucleoside triphosphate diphosphohydrolase 3	protein-coding
110539	chr19	2089951	2090980	+	0	NA	intron (NM_130807, intron 1 of 4)	MER20|DNA|hAT-Charlie	5861	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
223109	chr8	143459471	143460030	+	0	NA	intron (NM_015117, intron 9 of 11)	L1MB4|LINE|L1	-29018	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
163003	chr3	49774001	49774200	+	0	NA	intron (NM_153273, intron 1 of 5)	intron (NM_153273, intron 1 of 5)	12094	NM_001242829	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
76665	chr15	75688101	75688300	+	0	NA	exon (NM_001897, exon 3 of 10)	exon (NM_001897, exon 3 of 10)	24648	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
68762	chr14	91059831	91061780	+	0	NA	promoter-TSS (NM_001322231)	promoter-TSS (NM_001322231)	-156	NM_182398	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
239430	chrY	56689951	56690250	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-264155	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
44331	chr11	102410451	102410830	+	0	NA	intron (NM_052932, intron 2 of 4)	intron (NM_052932, intron 2 of 4)	42125	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
61825	chr13	75764371	75764730	+	0	NA	intron (NM_001330583, intron 2 of 28)	intron (NM_001330583, intron 2 of 28)	3889	NM_015842	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
104881	chr17	81874801	81875180	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3653	NM_001301240	396		NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
151923	chr22	19030951	19031250	+	0	NA	non-coding (NR_110533, exon 6 of 6)	non-coding (NR_110533, exon 6 of 6)	8476	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
56417	chr12	113302751	113303450	+	0	NA	intron (NR_152403, intron 15 of 15)	intron (NR_152403, intron 15 of 15)	11577	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
135142	chr2	157443751	157445400	+	0	NA	promoter-TSS (NM_004288)	promoter-TSS (NM_004288)	-486	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
177162	chr4	108143701	108143900	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	22997	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
5699	chr1	26371851	26372350	+	0	NA	intron (NM_001114759, intron 1 of 5)	intron (NM_001114759, intron 1 of 5)	650	NM_001114759	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
87124	chr16	68801171	68801330	+	0	NA	intron (NM_004360, intron 2 of 15)	AluSx1|SINE|Alu	-42281	NM_024562	79613		NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog	protein-coding
159932	chr3	17032501	17033030	+	0	NA	intron (NM_015184, intron 3 of 5)	intron (NM_015184, intron 3 of 5)	99569	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
17179	chr1	156229771	156230130	+	0	NA	intron (NM_001199654, intron 2 of 4)	MER63B|DNA|hAT-Blackjack	-12234	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
207136	chr7	42941151	42941560	+	0	NA	Intergenic	Intergenic	8979	NM_031903	64983		NM_031903	ENSG00000106591	MRPL32	HSPC283|L32mt|MRP-L32|bL32m|bMRP-59b	mitochondrial ribosomal protein L32	protein-coding
158222	chr22	50271681	50272650	+	0	NA	Intergenic	Intergenic	-1785	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
167854	chr3	134239601	134239800	+	0	NA	intron (NM_001005861, intron 1 of 14)	L2b|LINE|L2	11044	NM_001005861	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
230381	chr9	128083651	128084750	+	0	NA	intron (NM_001006641, intron 1 of 9)	MER4D1|LTR|ERV1	-7264	NM_001006642	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
107630	chr18	48944151	48945380	+	0	NA	intron (NM_005904, intron 2 of 3)	intron (NM_005904, intron 2 of 3)	-1958	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
175279	chr4	67538401	67538600	+	0	NA	intron (NR_155754, intron 4 of 18)	L1MEc|LINE|L1	7003	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
76690	chr15	75739971	75740200	+	0	NA	promoter-TSS (NR_024595)	promoter-TSS (NR_024595)	-8	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
205097	chr7	6752521	6752780	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1459	NM_001099697	728194		NM_001099697	ENSG00000169402	RSPH10B2	-	radial spoke head 10 homolog B2	protein-coding
21717	chr1	206767601	206768180	+	0	NA	non-coding (NR_168467, exon 3 of 3)	non-coding (NR_168467, exon 3 of 3)	2713	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
135099	chr2	157368701	157369080	+	0	NA	Intergenic	L1PA2|LINE|L1	11619	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
31606	chr10	97367851	97367950	+	0	NA	intron (NM_015179, intron 25 of 33)	AluSx1|SINE|Alu	-33171	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
4532	chr1	21914971	21915130	+	0	NA	intron (NM_001291860, intron 1 of 96)	intron (NM_001291860, intron 1 of 96)	22260	NM_005529	3339		NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
83304	chr16	24535871	24536350	+	0	NA	Intergenic	Intergenic	-3456	NM_006910	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
104387	chr17	81034551	81036050	+	0	NA	promoter-TSS (NR_026857)	promoter-TSS (NR_026857)	149	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
234389	chrX	16543951	16544050	+	0	NA	Intergenic	AluJo|SINE|Alu	83085	NR_039762	100616428		NR_039762	ENSG00000265144	MIR548AM	-	microRNA 548am	ncRNA
146864	chr20	51470851	51471550	+	0	NA	intron (NM_173091, intron 5 of 9)	intron (NM_173091, intron 5 of 9)	-18223	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
145336	chr20	41125801	41126230	+	0	NA	intron (NR_109889, intron 4 of 6)	intron (NR_109889, intron 4 of 6)	-11528	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
16631	chr1	155094101	155094600	+	0	NA	Intergenic	Intergenic	15513	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
17377	chr1	156583771	156584630	+	0	NA	intron (NM_001105669, intron 6 of 10)	intron (NM_001105669, intron 6 of 10)	4477	NM_001105669	164118		NM_001105669	ENSG00000187862	TTC24	-	tetratricopeptide repeat domain 24	protein-coding
159505	chr3	14399621	14399880	+	0	NA	Intergenic	Intergenic	-2826	NM_001134367	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
98501	chr17	47388871	47389230	+	0	NA	intron (NM_152347, intron 14 of 24)	AluJr|SINE|Alu	65095	NM_152347	124989		NM_152347	ENSG00000178852	EFCAB13	C17orf57	EF-hand calcium binding domain 13	protein-coding
114531	chr19	12836301	12836930	+	0	NA	Intergenic	Intergenic	-1187	NM_031429	83546		NM_031429	ENSG00000132026	RTBDN	-	retbindin	protein-coding
204030	chr7	1928671	1929180	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	11646	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
198965	chr6	110883551	110884450	+	0	NA	intron (NM_001287216, intron 1 of 4)	L1MD2|LINE|L1	9216	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
57905	chr12	123457751	123458960	+	0	NA	intron (NR_104103, intron 1 of 1)	CpG	216	NM_022717	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
180372	chr5	7372471	7372630	+	0	NA	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	-23588	NM_020546	108		NM_020546	ENSG00000078295	ADCY2	AC2|HBAC2	adenylate cyclase 2	protein-coding
67153	chr14	68757671	68758050	+	0	NA	Intergenic	Intergenic	35207	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
154896	chr22	37162201	37163400	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	12256	NM_001346223	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
114816	chr19	13809601	13809800	+	0	NA	intron (NM_023072, intron 5 of 12)	AluJb|SINE|Alu	14257	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
206971	chr7	38308321	38308700	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-33067	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
213762	chr7	140639251	140639700	+	0	NA	intron (NM_001318053, intron 1 of 13)	(AC)n|Simple_repeat|Simple_repeat	823	NM_001362678	27147		NM_015689	ENSG00000146966	DENND2A	FAM31D|KIAA1277	DENN domain containing 2A	protein-coding
90210	chr17	492551	492650	+	0	NA	Intergenic	MER41A|LTR|ERV1	-46660	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
216518	chr8	20435071	20435900	+	0	NA	Intergenic	Intergenic	-131522	NM_021020	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
100889	chr17	64388951	64389600	+	0	NA	intron (NM_000442, intron 2 of 15)	intron (NM_000442, intron 2 of 15)	1585	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
133911	chr2	130332201	130332950	+	0	NA	Intergenic	Intergenic	9589	NM_032357	84317		NM_032357	ENSG00000136710	CCDC115	CDG2O|ccp1	coiled-coil domain containing 115	protein-coding
42608	chr11	72109521	72109980	+	0	NA	3' UTR (NM_001145308, exon 7 of 7)	3' UTR (NM_001145308, exon 7 of 7)	2482	NM_001278494	25906		NM_014042	ENSG00000110200	ANAPC15	APC15|C11orf51|HSPC020	anaphase promoting complex subunit 15	protein-coding
230887	chr9	129206721	129207600	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-28899	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
74766	chr15	63240001	63240200	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	-37450	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
117869	chr19	32572271	32573430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8340	NM_004708	9141		NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
154437	chr22	35350551	35351500	+	0	NA	Intergenic	Intergenic	-14226	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
89484	chr16	89118521	89118780	+	0	NA	intron (NR_147928, intron 7 of 11)	intron (NR_147928, intron 7 of 11)	-17898	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
82590	chr16	18799701	18800150	+	0	NA	intron (NM_015161, intron 1 of 5)	AluJo|SINE|Alu	1445	NM_001313858	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
129071	chr2	65081071	65082280	+	0	NA	intron (NM_015147, intron 5 of 6)	intron (NM_015147, intron 5 of 6)	25259	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
177078	chr4	108055121	108055380	+	0	NA	intron (NM_001130714, intron 9 of 9)	intron (NM_001130714, intron 9 of 9)	50586	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
70573	chr14	102600801	102601000	+	0	NA	intron (NM_015156, intron 2 of 11)	AluSq2|SINE|Alu	8251	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
188142	chr5	150403801	150404450	+	0	NA	intron (NR_157074, intron 4 of 6)	MIR3|SINE|MIR	8631	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
99255	chr17	49717451	49718530	+	0	NA	intron (NM_030802, intron 5 of 7)	L2c|LINE|L2	-10026	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
220477	chr8	100451701	100452700	+	0	NA	Intergenic	Intergenic	69437	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
142399	chr20	3848671	3848980	+	0	NA	intron (NM_001385663, intron 1 of 7)	L2a|LINE|L2	1991	NM_020746	57506		NM_020746	ENSG00000088888	MAVS	CARDIF|IPS-1|IPS1|VISA	mitochondrial antiviral signaling protein	protein-coding
137298	chr2	195579301	195579500	+	0	NA	Intergenic	AluJo|SINE|Alu	-77558	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
97328	chr17	43263151	43263250	+	0	NA	Intergenic	Intergenic	3623	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
165140	chr3	71779771	71780780	+	0	NA	intron (NM_001126128, intron 2 of 3)	intron (NM_001126128, intron 2 of 3)	4873	NM_001126128	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
82565	chr16	18757921	18758880	+	0	NA	Intergenic	Intergenic	31934	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
17668	chr1	157695371	157696150	+	0	NA	intron (NR_135214, intron 7 of 15)	intron (NR_135214, intron 7 of 15)	5009	NR_135217	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
29603	chr10	71747801	71748070	+	0	NA	3' UTR (NM_022153, exon 7 of 7)	3' UTR (NM_022153, exon 7 of 7)	-10085	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
84880	chr16	31185921	31186450	+	0	NA	intron (NR_028388, intron 6 of 13)	intron (NR_028388, intron 6 of 13)	6046	NM_004960	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
210005	chr7	93115721	93116380	+	0	NA	intron (NM_017654, intron 1 of 2)	intron (NM_017654, intron 1 of 2)	1929	NM_017654	54809		NM_017654	ENSG00000205413	SAMD9	C7orf5|DRIF1|M7MLS2|MIRAGE|NFTC|OEF1|OEF2	sterile alpha motif domain containing 9	protein-coding
212303	chr7	124931121	124932180	+	0	NA	intron (NR_125719, intron 1 of 7)	intron (NR_125719, intron 1 of 7)	-1667	NR_003104	25913		NM_015450	ENSG00000128513	POT1	CMM10|CRMCC3|GLM9|HPOT1|PFBMFT8|TPDS3	protection of telomeres 1	protein-coding
188099	chr5	150360021	150360280	+	0	NA	intron (NM_001371623, intron 1 of 26)	MIRb|SINE|MIR	2453	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
94658	chr17	30238871	30239030	+	0	NA	Intergenic	Intergenic	-3253	NM_001045	6532		NM_001045	ENSG00000108576	SLC6A4	5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT	solute carrier family 6 member 4	protein-coding
131352	chr2	96168671	96168830	+	0	NA	Intergenic	AluSz6|SINE|Alu	-23310	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
198851	chr6	109371351	109372250	+	0	NA	intron (NM_001142401, intron 3 of 4)	intron (NM_001142401, intron 3 of 4)	9939	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
149889	chr21	36028271	36028730	+	0	NA	Intergenic	Intergenic	23180	NR_110419	100996609		NR_110419		LINC01436	-	long intergenic non-protein coding RNA 1436	ncRNA
71968	chr15	25365801	25366380	+	0	NA	intron (NM_001354539, intron 7 of 13)	intron (NM_001354539, intron 7 of 13)	72139	NM_001354526	7337		NM_000462	ENSG00000114062	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A|PIX1	ubiquitin protein ligase E3A	protein-coding
10542	chr1	66978721	66979200	+	0	NA	intron (NM_001077702, intron 13 of 15)	intron (NM_001077702, intron 13 of 15)	48704	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
108703	chr18	77064271	77064430	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-47295	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
54251	chr12	84843721	84843980	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	68949	NM_001146335	55117		NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding
142093	chr20	2526401	2526930	+	0	NA	Intergenic	L1MB7|LINE|L1	-2143	NM_001282495	79175		NM_024325	ENSG00000088876	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
231704	chr9	131727401	131727600	+	0	NA	intron (NM_001377935, intron 1 of 26)	MIR3|SINE|MIR	9947	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
48386	chr12	9607701	9608100	+	0	NA	promoter-TSS (NM_002258)	promoter-TSS (NM_002258)	16	NM_002258	3820		NM_002258	ENSG00000111796	KLRB1	CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A	killer cell lectin like receptor B1	protein-coding
105788	chr18	2889621	2890480	+	0	NA	intron (NM_032048, intron 3 of 7)	(ATCAT)n|Simple_repeat|Simple_repeat	43044	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
187608	chr5	142951751	142951850	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-82890	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
140395	chr2	233077721	233078630	+	0	NA	intron (NM_001017915, intron 1 of 26).2	intron (NM_001017915, intron 1 of 26).2	17833	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
175246	chr4	59807151	59807250	+	0	NA	Intergenic	L1PBa|LINE|L1	793627	NR_133942	105377247		NR_133941	ENSG00000251266	LINC02429	-	long intergenic non-protein coding RNA 2429	ncRNA
132584	chr2	106581001	106581200	+	0	NA	Intergenic	Intergenic	93736	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
137266	chr2	194257551	194257650	+	0	NA	Intergenic	AluY|SINE|Alu	-86669	NR_110222	101927406		NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
177934	chr4	136298871	136299100	+	0	NA	Intergenic	L1HS|LINE|L1	-385305	NR_103763	100507528		NR_103762	ENSG00000248330	LINC00613	-	long intergenic non-protein coding RNA 613	ncRNA
204217	chr7	2525701	2526100	+	0	NA	intron (NM_002304, intron 6 of 8)	intron (NM_002304, intron 6 of 8)	-1174	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
29069	chr10	67892401	67892800	+	0	NA	intron (NM_001142498, intron 3 of 7)	AluSx1|SINE|Alu	1198	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
26628	chr10	22436601	22437920	+	0	NA	non-coding (NR_036533, exon 1 of 1)	non-coding (NR_036533, exon 1 of 1)	669	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
134219	chr2	134679301	134680010	+	0	NA	intron (NM_030923, intron 2 of 7)	MIRc|SINE|MIR	39345	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
191440	chr6	10655601	10655980	+	0	NA	Intergenic	Intergenic	38819	NM_001145020	347744		NM_001145020	ENSG00000137434	C6orf52	-	chromosome 6 open reading frame 52	protein-coding
159164	chr3	12807871	12808030	+	0	NA	intron (NM_001162499, intron 3 of 14)	MLT1J|LTR|ERVL-MaLR	11270	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
23282	chr1	228004401	228005000	+	0	NA	Intergenic	Intergenic	-2298	NM_033131	89780		NM_033131	ENSG00000154342	WNT3A	-	Wnt family member 3A	protein-coding
232928	chr9	136897671	136898230	+	0	NA	intron (NM_021138, intron 1 of 10)	intron (NM_021138, intron 1 of 10)	11217	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
212009	chr7	114865601	114865950	+	0	NA	Intergenic	Intergenic	-56379	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
10054	chr1	58699051	58700380	+	0	NA	intron (NM_001085487, intron 1 of 19)	intron (NM_001085487, intron 1 of 19)	347	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
188393	chr5	152560601	152560800	+	0	NA	Intergenic	Intergenic	-155421	NM_020167	56923		NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
187958	chr5	149348421	149349280	+	0	NA	intron (NM_152407, intron 2 of 3)	CR1-L3A_Croc|LINE|CR1	3351	NM_152407	134266		NM_152407	ENSG00000164284	GRPEL2	Mt-GrpE#2	GrpE like 2, mitochondrial	protein-coding
225875	chr9	39042051	39042350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	245967	NM_033655	79937		NM_024879	ENSG00000106714	CNTNAP3	CASPR3|CNTNAP3A	contactin associated protein family member 3	protein-coding
61599	chr13	73090471	73090650	+	0	NA	Intergenic	Intergenic	31555	NM_001730	688		NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	KLF transcription factor 5	protein-coding
80666	chr16	3016971	3017630	+	0	NA	intron (NM_021195, intron 1 of 1)	intron (NM_021195, intron 1 of 1)	883	NM_021195	9074		NM_021195	ENSG00000184697	CLDN6	-	claudin 6	protein-coding
65591	chr14	52125971	52126350	+	0	NA	Intergenic	Intergenic	-57101	NM_007361	22795		NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
202513	chr6	158562171	158562730	+	0	NA	intron (NR_164859, intron 1 of 16)	(TG)n|Simple_repeat|Simple_repeat	2359	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
18785	chr1	167539901	167540700	+	0	NA	TTS (NM_003851)	TTS (NM_003851)	13462	NM_003851	8804		NM_003851	ENSG00000143162	CREG1	CREG	cellular repressor of E1A stimulated genes 1	protein-coding
225340	chr9	34636921	34638430	+	0	NA	exon (NM_001282205, exon 1 of 4)	exon (NM_001282205, exon 1 of 4)	112	NM_001282205	10280		NM_005866	ENSG00000147955	SIGMAR1	ALS16|DSMA2|HMNR2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding
45142	chr11	117197571	117197730	+	0	NA	TTS (NM_001040455)	TTS (NM_001040455)	-1644	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
119638	chr19	40804871	40805180	+	0	NA	intron (NM_053046, intron 2 of 5)	intron (NM_053046, intron 2 of 5)	5503	NM_053046	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
222778	chr8	141984251	141984350	+	0	NA	Intergenic	Intergenic	-192039	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
138561	chr2	207630301	207630700	+	0	NA	Intergenic	Intergenic	-4447	NM_001330133	151194		NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase 21A, HSPA lysine	protein-coding
123361	chr19	53887451	53888180	+	0	NA	intron (NM_001316329, intron 3 of 18)	AluSc8|SINE|Alu	5618	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
93073	chr17	17511271	17511430	+	0	NA	intron (NM_148172, intron 4 of 6)	intron (NM_148172, intron 4 of 6)	-14955	NM_001199989	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
238252	chrX	147914601	147914830	+	0	NA	intron (NR_033699, intron 1 of 15)	intron (NR_033699, intron 1 of 15)	2764	NM_001185075	2332		NM_002024	ENSG00000102081	FMR1	FMRP|FRAXA|POF|POF1	fragile X messenger ribonucleoprotein 1	protein-coding
230506	chr9	128259051	128259350	+	0	NA	exon (NM_004486, exon 19 of 26)	exon (NM_004486, exon 19 of 26)	-14170	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
71324	chr14	105400271	105400430	+	0	NA	intron (NM_001195082, intron 2 of 3)	intron (NM_001195082, intron 2 of 3)	1812	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
58997	chr13	20116271	20116850	+	0	NA	Intergenic	AluJr|SINE|Alu	13859	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
193515	chr6	30583171	30583730	+	0	NA	promoter-TSS (NR_030615).2	promoter-TSS (NR_030615).2	-882	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
109395	chr19	667101	668100	+	0	NA	Intergenic	Intergenic	-4386	NM_001366018	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
231603	chr9	131557901	131558450	+	0	NA	exon (NM_001365666, exon 4 of 4)	exon (NM_001365666, exon 4 of 4)	12652	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
117735	chr19	29608421	29608680	+	0	NA	intron (NR_027368, intron 1 of 5)	AluSx|SINE|Alu	2267	NR_027368	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
112652	chr19	6859321	6859980	+	0	NA	Intergenic	AluSg|SINE|Alu	-27929	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
234083	chrX	9164871	9165230	+	0	NA	Intergenic	L1ME2z|LINE|L1	-130923	NM_205849	171483		NM_173696	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9 member B	protein-coding
108604	chr18	75230921	75231300	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	20313	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
156189	chr22	40264721	40265180	+	0	NA	exon (NM_001162501, exon 5 of 23)	exon (NM_001162501, exon 5 of 23)	-81550	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
5841	chr1	26708101	26708550	+	0	NA	intron (NM_139135, intron 1 of 19)	AluSx3|SINE|Alu	12310	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
22611	chr1	223365971	223366280	+	0	NA	Intergenic	L3|LINE|CR1	-1949	NM_017982	55061		NM_017982	ENSG00000143502	SUSD4	PRO222	sushi domain containing 4	protein-coding
235485	chrX	46835451	46835930	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1353	NM_006915	6102		NM_006915	ENSG00000102218	RP2	DELXp11.3|NM23-H10|NME10|TBCCD2|XRP2	RP2 activator of ARL3 GTPase	protein-coding
2968	chr1	11932901	11933300	+	0	NA	Intergenic	AluSg|SINE|Alu	-1617	NM_000302	5351		NM_000302	ENSG00000083444	PLOD1	EDS6|EDSKCL1|LH|LH1|LLH|PLOD	procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	protein-coding
217107	chr8	24942921	24943650	+	0	NA	Intergenic	Intergenic	10582	NR_106900	102465506		NR_106900	ENSG00000283327	MIR6841	hsa-mir-6841	microRNA 6841	ncRNA
65262	chr14	49950701	49951280	+	0	NA	Intergenic	Intergenic	-15409	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
93286	chr17	18114671	18114830	+	0	NA	intron (NR_164159, intron 1 of 2)	L2a|LINE|L2	2811	NR_164159	105371566		NR_164159		LOC105371566	-	uncharacterized LOC105371566	ncRNA
14954	chr1	147723951	147724130	+	0	NA	Intergenic	Intergenic	36562	NM_181703	2702		NM_005266	ENSG00000265107	GJA5	ATFB11|CX40	gap junction protein alpha 5	protein-coding
235618	chrX	48019451	48020400	+	0	NA	Intergenic	Intergenic	12184	NM_001079900	729201		NM_001079900	ENSG00000171478	SPACA5B	LYZL5B	sperm acrosome associated 5B	protein-coding
53719	chr12	68618821	68619550	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	8190	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
97964	chr17	45241621	45242500	+	0	NA	exon (NM_005892, exon 15 of 27)	exon (NM_005892, exon 15 of 27)	-5865	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
168447	chr3	142931301	142931500	+	0	NA	intron (NR_038455, intron 1 of 4)	intron (NR_038455, intron 1 of 4)	4725	NR_038455	100507389		NR_038455	ENSG00000243818	HLMR1	-	hepatic lncRNA metabolic regulator 1	ncRNA
227986	chr9	95462171	95463330	+	0	NA	promoter-TSS (NR_038982)	promoter-TSS (NR_038982)	-859	NR_038982	100507346		NR_038982		LOC100507346	-	uncharacterized LOC100507346	ncRNA
73189	chr15	41505571	41506400	+	0	NA	exon (NM_002344, exon 12 of 20)	exon (NM_002344, exon 12 of 20)	7842	NM_002344	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
231953	chr9	133140621	133140930	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	8435	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
189705	chr5	176519201	176519400	+	0	NA	Intergenic	AluSx1|SINE|Alu	18102	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
108954	chr18	79514551	79514850	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-64582	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
154868	chr22	37133151	37134100	+	0	NA	intron (NM_000878, intron 8 of 9)	intron (NM_000878, intron 8 of 9)	16291	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
112902	chr19	7638471	7638700	+	0	NA	intron (NM_006949, intron 1 of 18)	AluJr|SINE|Alu	1475	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
104014	chr17	80111751	80112780	+	0	NA	intron (NM_000152, intron 12 of 19)	intron (NM_000152, intron 12 of 19)	10684	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
206308	chr7	30164471	30164850	+	0	NA	Intergenic	Intergenic	29674	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
15496	chr1	150429801	150430400	+	0	NA	intron (NM_015203, intron 2 of 10)	L1MEd|LINE|L1	-57319	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
102885	chr17	76521401	76521950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5911	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
100253	chr17	59392351	59392650	+	0	NA	intron (NM_001005404, intron 4 of 4)	intron (NM_001005404, intron 4 of 4)	26417	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
215844	chr8	7064671	7065630	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-8411	NM_021010	1670		NM_021010	ENSG00000164816	DEFA5	DEF5|HD-5	defensin alpha 5	protein-coding
164713	chr3	68038921	68039050	+	0	NA	intron (NM_213609, intron 2 of 4)	L2c|LINE|L2	34738	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
236141	chrX	63354151	63354730	+	0	NA	Intergenic	L1MDb|LINE|L1	-3108	NM_001012968	139886		NM_001012968	ENSG00000186767	SPIN4	LJBS|TDRD28	spindlin family member 4	protein-coding
182721	chr5	68254451	68254550	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-34019	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
135226	chr2	159281871	159282730	+	0	NA	intron (NM_001330279, intron 1 of 9)	AluY|SINE|Alu	4403	NM_001330278	151525		NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
2882	chr1	11642251	11643150	+	0	NA	Intergenic	Intergenic	-11707	NM_183412	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
110728	chr19	2318971	2319280	+	0	NA	Intergenic	MIRc|SINE|MIR	9461	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
86606	chr16	67326351	67327130	+	0	NA	promoter-TSS (NM_018296)	promoter-TSS (NM_018296)	1	NM_001100915	146212		NM_001100915	ENSG00000168676	KCTD19	-	potassium channel tetramerization domain containing 19	protein-coding
207278	chr7	43983771	43984450	+	0	NA	intron (NR_003655, intron 7 of 15)	AluJb|SINE|Alu	-13758	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
233065	chr9	137080351	137080530	+	0	NA	intron (NM_207309, intron 6 of 8)	intron (NM_207309, intron 6 of 8)	2923	NM_207309	91373		NM_207309	ENSG00000197355	UAP1L1	-	UDP-N-acetylglucosamine pyrophosphorylase 1 like 1	protein-coding
237751	chrX	129654121	129655250	+	0	NA	5' UTR (NM_017413, exon 1 of 3)	5' UTR (NM_017413, exon 1 of 3)	271	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
10746	chr1	76288901	76289550	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	214479	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
220499	chr8	100562401	100562800	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2841	NM_001270377	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
142377	chr20	3804171	3804330	+	0	NA	intron (NM_004358, intron 14 of 15)	L2|LINE|L2	4188	NM_001287524	994		NM_004358	ENSG00000101224	CDC25B	-	cell division cycle 25B	protein-coding
11048	chr1	84995821	84996480	+	0	NA	intron (NM_001330647, intron 1 of 14)	intron (NM_001330647, intron 1 of 14)	963	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
23966	chr1	235160051	235160150	+	0	NA	intron (NR_144491, intron 2 of 9)	AluSz|SINE|Alu	1150	NR_027762	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
61463	chr13	52193271	52195030	+	0	NA	non-coding (NR_002816, exon 1 of 9)	non-coding (NR_002816, exon 1 of 9)	317	NR_051965	100887750		NR_002816	ENSG00000291010	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
40345	chr11	63949771	63950130	+	0	NA	intron (NM_024771, intron 3 of 7)	AluY|SINE|Alu	10619	NM_001300800	79829		NM_024771	ENSG00000110583	NAA40	NAT11|NatD|PATT1|hNatD	N-alpha-acetyltransferase 40, NatD catalytic subunit	protein-coding
170813	chr3	189330801	189331480	+	0	NA	Intergenic	Intergenic	-90546	NR_046722	100874027		NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
171631	chr3	197520471	197520630	+	0	NA	intron (NM_203315, intron 5 of 6)	intron (NM_203315, intron 5 of 6)	-10889	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
48718	chr12	10697871	10698480	+	0	NA	TTS (NM_001145426)	TTS (NM_001145426)	-24123	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
27284	chr10	30350271	30350580	+	0	NA	Intergenic	MIRb|SINE|MIR	-1147	NM_018109	55149		NM_018109	ENSG00000107951	MTPAP	PAPD1|SPAX4|TENT6	mitochondrial poly(A) polymerase	protein-coding
174384	chr4	39029951	39030780	+	0	NA	intron (NM_001303228, intron 1 of 6)	intron (NM_001303228, intron 1 of 6)	2044	NM_024943	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
188077	chr5	150153001	150153200	+	0	NA	non-coding (NR_149150, exon 2 of 2)	non-coding (NR_149150, exon 2 of 2)	2745	NM_002609	5159		NM_002609	ENSG00000113721	PDGFRB	CD140B|IBGC4|IMF1|JTK12|KOGS|PDGFR|PDGFR-1|PDGFR1|PENTT	platelet derived growth factor receptor beta	protein-coding
158146	chr22	50183651	50183750	+	0	NA	Intergenic	Intergenic	-2213	NR_135275	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
150376	chr21	42236451	42237030	+	0	NA	intron (NM_207628, intron 4 of 16)	intron (NM_207628, intron 4 of 16)	16842	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
16339	chr1	154269521	154269830	+	0	NA	intron (NM_001375623, intron 27 of 27)	intron (NM_001375623, intron 27 of 27)	-2954	NM_001018837	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
149253	chr21	25790251	25790700	+	0	NA	Intergenic	Intergenic	-54821	NM_001320267	522		NM_001685	ENSG00000154723	ATP5PF	ATP5|ATP5A|ATP5J|ATPM|CF6|F6	ATP synthase peripheral stalk subunit F6	protein-coding
4162	chr1	19387771	19388130	+	0	NA	intron (NM_001313932, intron 2 of 4)	intron (NM_001313932, intron 2 of 4)	75624	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
121735	chr19	47728221	47728480	+	0	NA	intron (NM_014601, intron 4 of 5)	L2a|LINE|L2	14928	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
218916	chr8	60792601	60793450	+	0	NA	intron (NM_017780, intron 3 of 37)	intron (NM_017780, intron 3 of 37)	51766	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
214056	chr7	143383121	143383930	+	0	NA	TTS (NR_106952)	TTS (NR_106952)	839	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
172198	chr4	1258521	1258950	+	0	NA	Intergenic	L1MB2|LINE|L1	-8380	NM_001377192	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
230702	chr9	128764251	128764550	+	0	NA	intron (NM_001375956, intron 1 of 15)	intron (NM_001375956, intron 1 of 15)	7527	NM_006336	10444		NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related cell cycle regulator	protein-coding
89819	chr16	89568671	89568830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7008	NM_014427	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
75977	chr15	70509251	70509730	+	0	NA	Intergenic	MIR3|SINE|MIR	-3562	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
224336	chr9	6764371	6765100	+	0	NA	intron (NR_148677, intron 1 of 21)	intron (NR_148677, intron 1 of 21)	6762	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
164614	chr3	66353721	66354580	+	0	NA	intron (NM_173471, intron 7 of 10)	intron (NM_173471, intron 7 of 10)	51617	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
184892	chr5	112737201	112738650	+	0	NA	promoter-TSS (NM_001354906)	promoter-TSS (NM_001354906)	40	NM_001354905	324		NM_000038	ENSG00000134982	APC	BTPS2|DESMD|DP2|DP2.5|DP3|GS|PPP1R46	APC regulator of WNT signaling pathway	protein-coding
65986	chr14	57317301	57317500	+	0	NA	Intergenic	Intergenic	48429	NM_018229	55745		NM_018229	ENSG00000053770	AP5M1	C14orf108|MUDENG|Mu5|MuD	adaptor related protein complex 5 subunit mu 1	protein-coding
168331	chr3	141782571	141782730	+	0	NA	intron (NM_139209, intron 4 of 5)	L2|LINE|L2	19242	NM_139209	131890		NM_139209	ENSG00000114124	GRK7	GPRK7	G protein-coupled receptor kinase 7	protein-coding
211986	chr7	113263201	113263430	+	0	NA	Intergenic	L1PA3|LINE|L1	-144733	NM_001352687	401397		NM_001352687	ENSG00000214194	SMIM30	LINC00998|MAVI1	small integral membrane protein 30	protein-coding
173750	chr4	16224051	16224150	+	0	NA	intron (NM_153365, intron 1 of 13)	intron (NM_153365, intron 1 of 13)	2371	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
93962	chr17	21511201	21512100	+	0	NA	Intergenic	CpG	40028	NR_160801	339263		NM_001113434	ENSG00000212719	LINC02693	C17orf51	long intergenic non-protein coding RNA 2693	ncRNA
3244	chr1	13803121	13803580	+	0	NA	intron (NM_012231, intron 8 of 9)	L2b|LINE|L2	53935	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
221107	chr8	118056371	118056530	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	55376	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
162260	chr3	47291071	47291430	+	0	NA	intron (NM_025010, intron 1 of 9)	intron (NM_025010, intron 1 of 9)	8306	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
174230	chr4	37824801	37825300	+	0	NA	Intergenic	Intergenic	-1636	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
99038	chr17	48878271	48878430	+	0	NA	intron (NR_135674, intron 3 of 3)	intron (NR_135674, intron 3 of 3)	-14437	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
168004	chr3	136817901	136818500	+	0	NA	promoter-TSS (NM_001097599)	promoter-TSS (NM_001097599)	-819	NM_001097600	80723		NM_025246	ENSG00000168917	SLC35G2	TMEM22	solute carrier family 35 member G2	protein-coding
136991	chr2	190533751	190535400	+	0	NA	exon (NM_001142645, exon 1 of 9)	exon (NM_001142645, exon 1 of 9)	147	NM_001142645	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
213598	chr7	139389851	139390150	+	0	NA	intron (NM_016019, intron 2 of 9)	AluJr|SINE|Alu	30106	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
172166	chr4	1222901	1223330	+	0	NA	intron (NM_001377193, intron 5 of 9)	intron (NM_001377193, intron 5 of 9)	12995	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
204854	chr7	5820621	5821430	+	0	NA	Intergenic	AluSx|SINE|Alu	-2135	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
112427	chr19	6276271	6276630	+	0	NA	intron (NM_005934, intron 1 of 11)	intron (NM_005934, intron 1 of 11)	3525	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
25886	chr10	11265701	11265900	+	0	NA	intron (NM_001326346, intron 4 of 11)	intron (NM_001326346, intron 4 of 11)	78874	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
87971	chr16	80540501	80541650	+	0	NA	promoter-TSS (NM_130897)	promoter-TSS (NM_130897)	82	NR_130943	83657		NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein light chain roadblock-type 2	protein-coding
147173	chr20	56459021	56459280	+	0	NA	3' UTR (NM_001164116, exon 7 of 7)	3' UTR (NM_001164116, exon 7 of 7)	-9435	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
164136	chr3	56734321	56734650	+	0	NA	intron (NM_001289698, intron 9 of 10)	L1PA17|LINE|L1	41232	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
196595	chr6	44223021	44224830	+	0	NA	5' UTR (NM_001078177, exon 1 of 14)	5' UTR (NM_001078177, exon 1 of 14)	330	NM_001372327	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
186251	chr5	134482401	134482600	+	0	NA	Intergenic	AluY|SINE|Alu	-24052	NR_105045	101927934		NR_105045	ENSG00000251169	LINC01843	Lnc-APUE	long intergenic non-protein coding RNA 1843	ncRNA
125594	chr2	17518451	17518630	+	0	NA	promoter-TSS (NM_001099218)	promoter-TSS (NM_001099218)	-100	NM_001099218	729475		NM_001099218	ENSG00000214842	RAD51AP2	-	RAD51 associated protein 2	protein-coding
75624	chr15	67144701	67144900	+	0	NA	intron (NM_001145103, intron 1 of 8)	intron (NM_001145103, intron 1 of 8)	6779	NM_001145103	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
22319	chr1	213982721	213983300	+	0	NA	intron (NR_037850, intron 1 of 5)	CpG	3143	NR_037850	100505832		NR_037850	ENSG00000230461	PROX1-AS1	-	PROX1 antisense RNA 1	ncRNA
239375	chrY	20961671	20961830	+	0	NA	Intergenic	MER61F|LTR|ERV1	205642	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
87302	chr16	70118571	70118930	+	0	NA	intron (NM_017990, intron 2 of 18)	L2c|LINE|L2	4418	NM_017990	55066		NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
113189	chr19	8412651	8414230	+	0	NA	5' UTR (NM_001369776, exon 1 of 6)	5' UTR (NM_001369776, exon 1 of 6)	135	NR_163145	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
78957	chr15	101311771	101311930	+	0	NA	intron (NM_138319, intron 19 of 20)	intron (NM_138319, intron 19 of 20)	-2546	NR_045387	100507472		NR_045387		LOC100507472	-	uncharacterized LOC100507472	ncRNA
206645	chr7	36154751	36155280	+	0	NA	exon (NM_030636, exon 2 of 8)	exon (NM_030636, exon 2 of 8)	1761	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
107937	chr18	57916351	57916450	+	0	NA	Intergenic	Intergenic	-113085	NM_001374385	5205		NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
74562	chr15	60531821	60532080	+	0	NA	TTS (NR_120339)	TTS (NR_120339)	52772	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
115829	chr19	16493851	16494900	+	0	NA	intron (NM_145046, intron 2 of 8)	AluSx4|SINE|Alu	1792	NM_145046	125972		NM_145046	ENSG00000269058	CALR3	CMH19|CRT2|CT93	calreticulin 3	protein-coding
237939	chrX	132475521	132475780	+	0	NA	intron (NM_001170704, intron 1 of 8)	intron (NM_001170704, intron 1 of 8)	14385	NM_001170704	55796		NM_018388	ENSG00000076770	MBNL3	CHCR|MBLX|MBLX39|MBXL	muscleblind like splicing regulator 3	protein-coding
161307	chr3	39390371	39390780	+	0	NA	intron (NM_001354798, intron 3 of 5)	intron (NM_001354798, intron 3 of 5)	7205	NM_017875	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
13500	chr1	114728271	114728430	+	0	NA	intron (NM_001242891, intron 13 of 20)	intron (NM_001242891, intron 13 of 20)	-11579	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
121869	chr19	48309351	48309450	+	0	NA	intron (NM_144577, intron 5 of 13)	MER52C|LTR|ERV1	10099	NM_144577	93233		NM_144577	ENSG00000105479	ODAD1	CCDC114|CILD20	outer dynein arm docking complex subunit 1	protein-coding
171709	chr3	197861271	197861430	+	0	NA	intron (NM_001365715, intron 15 of 20)	MER105|DNA|hAT-Charlie	70096	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
213566	chr7	139249371	139249850	+	0	NA	intron (NM_173569, intron 2 of 17)	MamRep137|DNA|TcMar-Tigger	18373	NM_173569	254048		NM_173569	ENSG00000157741	UBN2	-	ubinuclein 2	protein-coding
228131	chr9	96684671	96685030	+	0	NA	Intergenic	AluY|SINE|Alu	-29533	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
130354	chr2	85013571	85014000	+	0	NA	intron (NM_020122, intron 1 of 6)	AluSg|SINE|Alu	42624	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
202132	chr6	154928251	154928600	+	0	NA	Intergenic	Intergenic	-66890	NM_012454	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
1813	chr1	6213371	6213980	+	0	NA	intron (NM_207396, intron 16 of 17)	intron (NM_207396, intron 16 of 17)	7556	NM_207396	388591		NM_173795	ENSG00000158286	RNF207	C1orf188	ring finger protein 207	protein-coding
63866	chr14	21719851	21720200	+	0	NA	Intergenic	Intergenic	-49008	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
64616	chr14	30875371	30875600	+	0	NA	TTS (NR_038356)	TTS (NR_038356)	926	NM_004086	1690		NM_004086	ENSG00000100473	COCH	COCH-5B2|COCH5B2|DFNA9|DFNB110	cochlin	protein-coding
187870	chr5	148385371	148385980	+	0	NA	intron (NM_205836, intron 1 of 21)	intron (NM_205836, intron 1 of 21)	1717	NM_030793	81545		NM_030793	ENSG00000145868	FBXO38	Fbx38|HMN2D|HMND6|MOKA|SP329	F-box protein 38	protein-coding
198300	chr6	100457721	100457980	+	0	NA	intron (NM_005068, intron 2 of 11)	intron (NM_005068, intron 2 of 11)	6606	NM_001374769	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
178957	chr4	159126771	159127180	+	0	NA	intron (NM_001351724, intron 1 of 30)	intron (NM_001351724, intron 1 of 30)	-1830	NR_039963	100616303		NR_039963	ENSG00000283379	MIR3688-2	mir-3688-2	microRNA 3688-2	ncRNA
174017	chr4	26459101	26459500	+	0	NA	Intergenic	Intergenic	31184	NM_000730	886		NM_000730	ENSG00000163394	CCKAR	CCK-1R|CCK-A|CCK1-R|CCK1R|CCKRA	cholecystokinin A receptor	protein-coding
205046	chr7	6558651	6559080	+	0	NA	Intergenic	Intergenic	-7429	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
187345	chr5	141679601	141680000	+	0	NA	exon (NM_022481, exon 3 of 33)	exon (NM_022481, exon 3 of 33)	2430	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
87748	chr16	75236001	75236600	+	0	NA	intron (NM_001170719, intron 4 of 6).2	intron (NM_001170719, intron 4 of 6).2	2360	NM_001170721	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
95882	chr17	38875921	38876330	+	0	NA	intron (NM_006148, intron 1 of 6)	intron (NM_006148, intron 1 of 6)	6067	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
28701	chr10	61152021	61152100	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	135785	NR_108052	100507058		NR_108052	ENSG00000227244	LINC00845	-	long intergenic non-protein coding RNA 845	ncRNA
78435	chr15	92806751	92807350	+	0	NA	Intergenic	AluJo|SINE|Alu	11566	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
154341	chr22	32389771	32389930	+	0	NA	intron (NM_014306, intron 11 of 11)	L2a|LINE|L2	13186	NR_038918	339666		NR_038918	ENSG00000230736	LOC339666	-	uncharacterized LOC339666	ncRNA
209158	chr7	75180471	75181030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8752	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
222495	chr8	140460001	140460200	+	0	NA	Intergenic	AluJo|SINE|Alu	-1521	NM_031466	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
142520	chr20	4913271	4913430	+	0	NA	intron (NM_203327, intron 3 of 16)	intron (NM_203327, intron 3 of 16)	88160	NM_005116	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
144875	chr20	36915051	36915450	+	0	NA	intron (NM_001363733, intron 9 of 15)	AluJr|SINE|Alu	36458	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
152521	chr22	20963971	20964130	+	0	NA	intron (NR_110537, intron 1 of 1)	intron (NR_110537, intron 1 of 1)	-1122	NM_001018060	150209		NM_144704	ENSG00000183773	AIFM3	AIFL	apoptosis inducing factor mitochondria associated 3	protein-coding
57229	chr12	121532451	121533180	+	0	NA	exon (NM_032590, exon 8 of 23)	exon (NM_032590, exon 8 of 23)	47431	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
178607	chr4	152052571	152052930	+	0	NA	Intergenic	Intergenic	-48003	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
96940	chr17	42176651	42177100	+	0	NA	intron (NM_012285, intron 4 of 16)	intron (NM_012285, intron 4 of 16)	4267	NM_012285	23415		NM_012285	ENSG00000089558	KCNH4	BEC2|ELK1|Kv12.3	potassium voltage-gated channel subfamily H member 4	protein-coding
181374	chr5	40623151	40624130	+	0	NA	Intergenic	Intergenic	-56275	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
144340	chr20	34993771	34993930	+	0	NA	intron (NM_020884, intron 26 of 44)	intron (NM_020884, intron 26 of 44)	-3378	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
85835	chr16	57004751	57005080	+	0	NA	intron (NR_169520, intron 1 of 47)	intron (NR_169520, intron 1 of 47)	15358	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
123848	chr19	55239801	55240600	+	0	NA	promoter-TSS (NR_106860)	promoter-TSS (NR_106860)	-224	NR_106860	102465481		NR_106860	ENSG00000278328	MIR6802	hsa-mir-6802	microRNA 6802	ncRNA
234555	chrX	19729151	19730050	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	-58601	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
12394	chr1	101288051	101288800	+	0	NA	Intergenic	Intergenic	-35412	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
6892	chr1	31487201	31487950	+	0	NA	Intergenic	Intergenic	-12510	NR_034112	149086		NR_034112	ENSG00000293391	LDC1P	LINC01225	leucine decarboxylase 1, pseudogene	pseudo
74291	chr15	57747121	57747380	+	0	NA	Intergenic	Intergenic	40536	NM_015532	81488		NM_015532	ENSG00000255529	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	RNA polymerase II subunit M	protein-coding
53207	chr12	62268171	62268800	+	0	NA	intron (NM_001351164, intron 1 of 21)	intron (NM_001351164, intron 1 of 21)	8081	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
137032	chr2	190744151	190744250	+	0	NA	Intergenic	Intergenic	85042	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
38093	chr11	35208551	35209350	+	0	NA	intron (NM_001001389, intron 11 of 16)	intron (NM_001001389, intron 11 of 16)	46000	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
89443	chr16	88974601	88975000	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	2407	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
147720	chr20	62372121	62372700	+	0	NA	Intergenic	Intergenic	-5098	NM_005560	3911		NM_005560	ENSG00000130702	LAMA5	BBDS2|NPHS26	laminin subunit alpha 5	protein-coding
14230	chr1	143219601	143220950	+	0	NA	Intergenic	Intergenic	202317	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
154847	chr22	37098721	37099480	+	0	NA	intron (NM_153609, intron 2 of 17)	L2b|LINE|L2	4556	NM_153609	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
18461	chr1	161561221	161561680	+	0	NA	Intergenic	MIR3|SINE|MIR	-10713	NM_001329120	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
26827	chr10	24556951	24557380	+	0	NA	Intergenic	Intergenic	65678	NR_160025	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
129893	chr2	73202221	73203680	+	0	NA	exon (NM_001134462, exon 1 of 3)	exon (NM_001134462, exon 1 of 3)	376	NM_001134462	344022		NM_001134462	ENSG00000214513	NOTO	-	notochord homeobox	protein-coding
168468	chr3	143118951	143120460	+	0	NA	promoter-TSS (NM_004267)	promoter-TSS (NM_004267)	-66	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
161665	chr3	43337151	43337630	+	0	NA	intron (NM_017719, intron 4 of 6)	intron (NM_017719, intron 4 of 6)	14572	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
183394	chr5	77773371	77773730	+	0	NA	intron (NM_001297738, intron 1 of 2)	MIR|SINE|MIR	2789	NM_004607	6902		NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
45218	chr11	117874221	117874530	+	0	NA	intron (NM_001164837, intron 1 of 8)	intron (NM_001164837, intron 1 of 8)	2283	NM_022003	53826		NM_022003	ENSG00000137726	FXYD6	-	FXYD domain containing ion transport regulator 6	protein-coding
19852	chr1	183022301	183022500	+	0	NA	Intergenic	Intergenic	-1020	NM_002293	3915		NM_002293	ENSG00000135862	LAMC1	LAMB2	laminin subunit gamma 1	protein-coding
122383	chr19	49407171	49407500	+	0	NA	intron (NM_144688, intron 11 of 19)	intron (NM_144688, intron 11 of 19)	16106	NM_178449	113091		NM_178449	ENSG00000142538	PTH2	TIP39	parathyroid hormone 2	protein-coding
184725	chr5	109438801	109439200	+	0	NA	Intergenic	Intergenic	-29026	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
18800	chr1	167626871	167627030	+	0	NA	Intergenic	AluJr|SINE|Alu	-3243	NM_001322923	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
43956	chr11	93729321	93729930	+	0	NA	TTS (NR_146090)	TTS (NR_146090)	1021	NR_003028	684959		NR_003028	ENSG00000207112	SNORA25	ACA25|SNORA25A	small nucleolar RNA, H/ACA box 25	snoRNA
66715	chr14	64390471	64390630	+	0	NA	intron (NM_001364837, intron 1 of 26)	AluSq2|SINE|Alu	2197	NM_005956	4522		NM_005956	ENSG00000100714	MTHFD1	CIMAH|MTHFC|MTHFD	methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1	protein-coding
91517	chr17	4964071	4964230	+	0	NA	intron (NM_004890, intron 1 of 6)	intron (NM_004890, intron 1 of 6)	3667	NM_004890	9552		NM_004890	ENSG00000091640	SPAG7	ACRP|FSA-1	sperm associated antigen 7	protein-coding
78612	chr15	93986001	93986200	+	0	NA	intron (NR_120320, intron 3 of 8)	intron (NR_120320, intron 3 of 8)	85399	NR_120323	101927129		NR_120322	ENSG00000258785	LINC01580	-	long intergenic non-protein coding RNA 1580	ncRNA
103704	chr17	78821701	78822380	+	0	NA	intron (NR_169585, intron 6 of 19)	intron (NR_169585, intron 6 of 19)	18774	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
35937	chr11	2464921	2465180	+	0	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	3596	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
120085	chr19	42119521	42120400	+	0	NA	intron (NM_001247994, intron 4 of 13)	AluJb|SINE|Alu	12486	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
150349	chr21	42161671	42162250	+	0	NA	Intergenic	Intergenic	-37729	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
157721	chr22	46510001	46510400	+	0	NA	intron (NM_001378328, intron 1 of 34)	intron (NM_001378328, intron 1 of 34)	27420	NM_014246	9620		NM_014246	ENSG00000075275	CELSR1	ADGRC1|CDHF9|FMI2|HFMI2|LMPHM9|ME2	cadherin EGF LAG seven-pass G-type receptor 1	protein-coding
234632	chrX	19886801	19888200	+	0	NA	promoter-TSS (NM_001353891)	promoter-TSS (NM_001353891)	100	NM_001353891	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
66674	chr14	63932621	63933700	+	0	NA	intron (NM_015180, intron 2 of 114)	intron (NM_015180, intron 2 of 114)	80156	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
9721	chr1	53135251	53136130	+	0	NA	intron (NM_001287595, intron 1 of 10)	MER53|DNA|hAT	6948	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
175122	chr4	54958171	54958530	+	0	NA	Intergenic	Intergenic	167245	NM_002253	3791		NM_002253	ENSG00000128052	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor	protein-coding
219270	chr8	67400821	67401680	+	0	NA	intron (NR_136224, intron 1 of 4)	L1MB7|LINE|L1	57416	NR_136224	102724708		NR_136223		ARFGEF1-DT	-	ARFGEF1 divergent transcript	ncRNA
178365	chr4	146333501	146333950	+	0	NA	intron (NM_001317816, intron 4 of 10)	L2b|LINE|L2	-74858	NR_107003	102465837		NR_107003	ENSG00000278438	MIR7849	hsa-mir-7849	microRNA 7849	ncRNA
158179	chr22	50222401	50222800	+	0	NA	intron (NM_020461, intron 13 of 24)	intron (NM_020461, intron 13 of 24)	21589	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
35455	chr11	1460051	1460150	+	0	NA	intron (NR_046331, intron 20 of 20)	intron (NR_046331, intron 20 of 20)	20786	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
68566	chr14	89414621	89415080	+	0	NA	intron (NM_001085471, intron 1 of 6)	AluSc|SINE|Alu	2383	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
167030	chr3	126473501	126474150	+	0	NA	intron (NR_104249, intron 1 of 8)	intron (NR_104249, intron 1 of 8)	2066	NM_025112	79364		NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
103953	chr17	79915871	79916230	+	0	NA	intron (NR_110850, intron 5 of 5)	intron (NR_110850, intron 5 of 5)	-3307	NR_110851	101928738		NR_110851	ENSG00000262188	LINC01978	-	long intergenic non-protein coding RNA 1978	ncRNA
61070	chr13	48311101	48311500	+	0	NA	intron (NM_000321, intron 2 of 26)	intron (NM_000321, intron 2 of 26)	7549	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
39729	chr11	61786201	61786400	+	0	NA	3' UTR (NM_001127392, exon 27 of 27)	3' UTR (NM_001127392, exon 27 of 27)	6261	NR_030342	693196		NR_030342	ENSG00000284108	MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
29575	chr10	71706871	71707230	+	0	NA	exon (NM_001171931, exon 25 of 25)	exon (NM_001171931, exon 25 of 25)	12728	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
54537	chr12	92133391	92134100	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	7968	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
205373	chr7	13991031	13992130	+	0	NA	promoter-TSS (NR_120445)	promoter-TSS (NR_120445)	-155	NM_001163148	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
103603	chr17	78722201	78722750	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	1255	NM_001365041	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
22117	chr1	211696521	211696780	+	0	NA	Intergenic	Intergenic	20888	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
70605	chr14	102790501	102790700	+	0	NA	intron (NM_001199427, intron 1 of 7)	THE1B|LTR|ERVL-MaLR	13121	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
161801	chr3	45330701	45330900	+	0	NA	Intergenic	LTR89|LTR|ERVL?	-57776	NM_001368263	23395		NM_015340	ENSG00000011376	LARS2	HLASA|LEURS|PRLTS4|mtLeuRS	leucyl-tRNA synthetase 2, mitochondrial	protein-coding
83122	chr16	22528271	22528730	+	0	NA	intron (NM_001135865, intron 4 of 6)	AluSq2|SINE|Alu	14977	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
173882	chr4	24562051	24562600	+	0	NA	intron (NM_001358, intron 3 of 13)	intron (NM_001358, intron 3 of 13)	22229	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
117656	chr19	23991251	23991580	+	0	NA	Intergenic	LTR18C|LTR|ERVL	-33462	NR_149007	100505851		NR_149007	ENSG00000269289	LOC100505851	-	uncharacterized LOC100505851	ncRNA
201911	chr6	151379371	151379530	+	0	NA	intron (NM_020861, intron 1 of 2)	AluJr|SINE|Alu	12109	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
188226	chr5	150783201	150784850	+	0	NA	intron (NM_032947, intron 1 of 1)	AluSc|SINE|Alu	6079	NM_032947	85027		NM_032947	ENSG00000256235	SMIM3	C5orf62|MST150|NID67	small integral membrane protein 3	protein-coding
56650	chr12	119660121	119660450	+	0	NA	Intergenic	L2b|LINE|L2	-7848	NM_006253	5564		NM_006253	ENSG00000111725	PRKAB1	AMPK|HAMPKb	protein kinase AMP-activated non-catalytic subunit beta 1	protein-coding
2352	chr1	9279221	9279680	+	0	NA	Intergenic	Intergenic	-13444	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
211578	chr7	105691521	105692700	+	0	NA	intron (NM_001385596, intron 3 of 11)	intron (NM_001385596, intron 3 of 11)	-12948	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
217150	chr8	26046421	26047100	+	0	NA	Intergenic	CpG-27103	-1347	NM_022659	64641		NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	EBF transcription factor 2	protein-coding
189936	chr5	177392901	177393500	+	0	NA	intron (NM_003052, intron 8 of 12)	intron (NM_003052, intron 8 of 12)	7461	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
49985	chr12	42142271	42142850	+	0	NA	intron (NM_173601, intron 1 of 7)	AluJr|SINE|Alu	2314	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
44639	chr11	110201321	110202230	+	0	NA	intron (NM_001260496, intron 6 of 7)	AluSx|SINE|Alu	94839	NM_002906	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
224517	chr9	19122571	19123050	+	0	NA	intron (NR_038064, intron 3 of 6)	MER1B|DNA|hAT-Charlie	4682	NM_001122	123		NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
216740	chr8	22454471	22454630	+	0	NA	intron (NM_005605, intron 1 of 13)	Tigger3b|DNA|TcMar-Tigger	13472	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
219543	chr8	76998671	76999080	+	0	NA	intron (NM_001172086, intron 2 of 4)	MIRc|SINE|MIR	1203	NM_000318	5828		NM_000318	ENSG00000164751	PEX2	PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3	peroxisomal biogenesis factor 2	protein-coding
117906	chr19	32795701	32796100	+	0	NA	intron (NM_001366102, intron 14 of 32)	MSTA|LTR|ERVL-MaLR	73867	NM_001243036	11136		NM_014270	ENSG00000021488	SLC7A9	BAT1|CSNU3	solute carrier family 7 member 9	protein-coding
175297	chr4	67746801	67747080	+	0	NA	intron (NM_000406, intron 1 of 2)	intron (NM_000406, intron 1 of 2)	7448	NM_001012763	2798		NM_000406	ENSG00000109163	GNRHR	GNRHR1|GRHR|HH7|LHRHR|LRHR	gonadotropin releasing hormone receptor	protein-coding
12024	chr1	96845551	96845830	+	0	NA	Intergenic	Intergenic	123052	NR_125356	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
72506	chr15	33193621	33193880	+	0	NA	intron (NM_001277314, intron 2 of 4)	intron (NM_001277314, intron 2 of 4)	964	NM_001277313	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
82079	chr16	14202521	14202780	+	0	NA	intron (NM_001365415, intron 1 of 7)	(TAATAG)n|Simple_repeat|Simple_repeat	15964	NM_001365416	57496		NM_014048	ENSG00000186260	MRTFB	MKL2|MRTF-B|NPD001	myocardin related transcription factor B	protein-coding
42807	chr11	72812651	72813600	+	0	NA	Intergenic	L2b|LINE|L2	-1286	NM_033388	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
38475	chr11	45810421	45810680	+	0	NA	intron (NM_018389, intron 1 of 1)	L2c|LINE|L2	5401	NM_018389	55343		NM_018389	ENSG00000181830	SLC35C1	CDG2C|FUCT1	solute carrier family 35 member C1	protein-coding
7695	chr1	35937251	35937550	+	0	NA	intron (NM_177422, intron 1 of 16)	AluSq2|SINE|Alu	6295	NM_177422	192669		NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
208981	chr7	74209171	74209330	+	0	NA	promoter-TSS (NM_014146)	promoter-TSS (NM_014146)	-756	NM_032464	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
71102	chr14	104885371	104885730	+	0	NA	intron (NM_001112726, intron 10 of 18)	intron (NM_001112726, intron 10 of 18)	20236	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
222982	chr8	143219521	143219780	+	0	NA	Intergenic	Intergenic	6432	NM_178172	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
205079	chr7	6641421	6641680	+	0	NA	intron (NM_001278559, intron 3 of 8)	intron (NM_001278559, intron 3 of 8)	4232	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
197280	chr6	70712901	70713100	+	0	NA	intron (NM_001281440, intron 1 of 10)	AluSz|SINE|Alu	44470	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
135077	chr2	156566851	156566950	+	0	NA	intron (NM_000408, intron 9 of 16)	L1MB3|LINE|L1	130521	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
168837	chr3	152256701	152258010	+	0	NA	intron (NM_001376839, intron 2 of 10)	intron (NM_001376839, intron 2 of 10)	-11574	NM_001376823	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
38323	chr11	44147551	44147660	+	0	NA	intron (NM_001178083, intron 8 of 14)	AluYh3|SINE|Alu	51408	NM_000401	2132		NM_000401	ENSG00000151348	EXT2	SOTV|SSMS	exostosin glycosyltransferase 2	protein-coding
127187	chr2	38508321	38508780	+	0	NA	intron (NR_110259, intron 1 of 4)	intron (NR_110259, intron 1 of 4)	7190	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
16137	chr1	153665821	153666280	+	0	NA	intron (NM_004515, intron 6 of 13)	MER20|DNA|hAT-Charlie	4943	NM_004515	3608		NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
190052	chr5	177561251	177561630	+	0	NA	Intergenic	LTR13|LTR|ERVK	-6877	NM_001190946	54540		NM_019057	ENSG00000146067	FAM193B	IRIZIO	family with sequence similarity 193 member B	protein-coding
35306	chr11	1027351	1027450	+	0	NA	exon (NM_005961, exon 17 of 33)	exon (NM_005961, exon 17 of 33)	9318	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
222213	chr8	133063851	133064150	+	0	NA	intron (NM_001045557, intron 1 of 7)	intron (NM_001045557, intron 1 of 7)	-3646	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
203352	chr6	170295301	170296350	+	0	NA	intron (NM_001286380, intron 1 of 10)	CpG-24321	504	NM_001286380	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
232551	chr9	136350401	136350680	+	0	NA	intron (NM_001145638, intron 11 of 13)	intron (NM_001145638, intron 11 of 13)	-2517	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
51542	chr12	52360801	52361000	+	0	NA	exon (NM_001300810, exon 7 of 7)	exon (NM_001300810, exon 7 of 7)	3722	NM_001300810	3891		NM_002283	ENSG00000135443	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
8334	chr1	40174071	40174500	+	0	NA	intron (NM_012421, intron 1 of 7)	AluSg4|SINE|Alu	12898	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
168496	chr3	143450601	143451230	+	0	NA	intron (NM_173653, intron 12 of 15)	intron (NM_173653, intron 12 of 15)	108669	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
154525	chr22	36126071	36126430	+	0	NA	Intergenic	MIRc|SINE|MIR	34505	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
52146	chr12	54251471	54252080	+	0	NA	intron (NM_012117, intron 3 of 4)	intron (NM_012117, intron 3 of 4)	7770	NM_001127322	23468		NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A|HP1alpha	chromobox 5	protein-coding
142871	chr20	17679101	17679300	+	0	NA	intron (NM_004587, intron 1 of 24)	intron (NM_004587, intron 1 of 24)	3042	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
132262	chr2	102753571	102753830	+	0	NA	intron (NM_001321345, intron 1 of 4)	intron (NM_001321345, intron 1 of 4)	-8331	NM_144632	130827		NM_144632	ENSG00000170417	TMEM182	-	transmembrane protein 182	protein-coding
224760	chr9	21969301	21970000	+	0	NA	intron (NM_001195132, intron 2 of 3)	intron (NM_001195132, intron 2 of 3)	2511	NR_024274	51198		NM_016349		CDKN2A-AS1	C9orf53|CDKN2A-DT|bA149I2.3	CDKN2A antisense RNA 1	ncRNA
235274	chrX	41863321	41863850	+	0	NA	intron (NM_001126055, intron 1 of 24)	intron (NM_001126055, intron 1 of 24)	59449	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
187521	chr5	142434071	142434230	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	108857	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
191830	chr6	14857071	14858050	+	0	NA	Intergenic	Intergenic	-388509	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
218662	chr8	57748151	57748450	+	0	NA	non-coding (NR_134276, exon 2 of 2)	non-coding (NR_134276, exon 2 of 2)	2151	NR_134276	286178		NR_134276	ENSG00000254139	LINC03018	-	long intergenic non-protein coding RNA 3018	ncRNA
105972	chr18	5308821	5309180	+	0	NA	Intergenic	LTR72B|LTR|ERV1	-11947	NM_001243704	7541		NM_003409	ENSG00000198081	ZBTB14	ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478	zinc finger and BTB domain containing 14	protein-coding
66927	chr14	65431101	65431300	+	0	NA	intron (NM_001371534, intron 2 of 11)	AluSp|SINE|Alu	18470	NM_001371533	2530		NM_004480	ENSG00000033170	FUT8	CDGF|CDGF1	fucosyltransferase 8	protein-coding
94857	chr17	31506321	31506630	+	0	NA	intron (NM_001346748, intron 1 of 12)	L1MA6|LINE|L1	18367	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
150043	chr21	37373071	37373230	+	0	NA	intron (NM_001347723, intron 1 of 10)	MIRc|SINE|MIR	5593	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
51054	chr12	49820051	49820350	+	0	NA	intron (NM_001368048, intron 1 of 13)	intron (NM_001368048, intron 1 of 13)	8213	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
197001	chr6	53309121	53310050	+	0	NA	intron (NM_001242830, intron 1 of 6)	MLT1F|LTR|ERVL-MaLR	28032	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
197334	chr6	73394451	73395500	+	0	NA	exon (NM_018665, exon 1 of 17)	exon (NM_018665, exon 1 of 17)	147	NM_018665	55510		NM_018665	ENSG00000080007	DDX43	CT13|HAGE	DEAD-box helicase 43	protein-coding
167217	chr3	128447701	128447900	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-15794	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
152870	chr22	22460751	22460850	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	47942	NR_130643	140883		NM_080764	ENSG00000275004	ZNF280B	5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632	zinc finger protein 280B	protein-coding
224491	chr9	16879451	16879600	+	0	NA	Intergenic	MER99|DNA|hAT?	-8855	NM_017637	54796		NM_017637	ENSG00000173068	BNC2	BSN2|LUTO|bn2	basonuclin zinc finger protein 2	protein-coding
21209	chr1	204079751	204080050	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	6785	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
25201	chr10	5688201	5688930	+	0	NA	intron (NM_017782, intron 1 of 20)	Charlie1|DNA|hAT-Charlie	3727	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
17867	chr1	159942571	159942930	+	0	NA	intron (NM_001135050, intron 3 of 20)	(GT)n|Simple_repeat|Simple_repeat	2863	NM_001135050	57549		NM_020789	ENSG00000085552	IGSF9	FP18798|IGSF9A|Nrt1	immunoglobulin superfamily member 9	protein-coding
152345	chr22	20433151	20433750	+	0	NA	intron (NM_182895, intron 1 of 10)	intron (NM_182895, intron 1 of 10)	4375	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
122089	chr19	48741351	48742480	+	0	NA	non-coding (NR_135832, exon 7 of 9)	non-coding (NR_135832, exon 7 of 9)	-1305	NM_017805	54922		NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
202964	chr6	161245651	161245750	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	28361	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
84705	chr16	30815621	30815880	+	0	NA	Intergenic	AluJb|SINE|Alu	-28545	NM_001345970	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
77140	chr15	79872451	79873080	+	0	NA	intron (NM_006441, intron 2 of 2)	MER66C|LTR|ERV1	24232	NR_037654	10588		NM_006441	ENSG00000136371	MTHFS	HsT19268|NEDMEHM	methenyltetrahydrofolate synthetase	protein-coding
82995	chr16	22110571	22110730	+	0	NA	intron (NM_173615, intron 7 of 33).2	intron (NM_173615, intron 7 of 33).2	18109	NM_173615	146177		NM_173615	ENSG00000175267	VWA3A	-	von Willebrand factor A domain containing 3A	protein-coding
4808	chr1	23596871	23597030	+	0	NA	Intergenic	Intergenic	-30384	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
115074	chr19	14204401	14204600	+	0	NA	intron (NM_001008701, intron 1 of 23)	intron (NM_001008701, intron 1 of 23)	1669	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
212062	chr7	114998951	114999250	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	76946	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
213631	chr7	139635551	139636280	+	0	NA	intron (NM_022740, intron 2 of 14)	L2c|LINE|L2	112230	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
128560	chr2	60889401	60889600	+	0	NA	intron (NM_001291746, intron 1 of 9)	L1PA4|LINE|L1	7926	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133360	chr2	117722021	117722300	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-92531	NM_006773	8886		NM_006773	ENSG00000088205	DDX18	Has1|MrDb	DEAD-box helicase 18	protein-coding
69360	chr14	94005121	94005580	+	0	NA	intron (NR_024184, intron 6 of 6)	(CA)n|Simple_repeat|Simple_repeat	8049	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
25400	chr10	6527721	6528050	+	0	NA	intron (NM_001323265, intron 1 of 17)	MER4CL34|LTR|ERV1	52391	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
71598	chr14	106564021	106564380	+	0	NA	Intergenic	Intergenic	81761	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
25168	chr10	5381271	5381530	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	16434	NM_053049	114131		NM_053049	ENSG00000178473	UCN3	SCP|SPC|UCNIII	urocortin 3	protein-coding
202250	chr6	156916501	156916700	+	0	NA	intron (NM_001371656, intron 5 of 20)	intron (NM_001371656, intron 5 of 20)	-119827	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
56926	chr12	120448771	120448930	+	0	NA	intron (NM_176818, intron 2 of 3)	AluSq4|SINE|Alu	2406	NR_033684	283459		NM_176818	ENSG00000257218	GATC	15E1.2|COXPD42	glutamyl-tRNA amidotransferase subunit C	protein-coding
121619	chr19	47428001	47429050	+	0	NA	3' UTR (NM_015063, exon 10 of 10)	3' UTR (NM_015063, exon 10 of 10)	-6292	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
83274	chr16	24012501	24012700	+	0	NA	intron (NM_212535, intron 3 of 16)	L2b|LINE|L2	176617	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
82960	chr16	21920601	21921600	+	0	NA	Intergenic	MER77B|LTR|ERVL	-32261	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
749	chr1	1494521	1495030	+	0	NA	intron (NM_031921, intron 15 of 15)	intron (NM_031921, intron 15 of 15)	16926	NM_001317238	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
13229	chr1	112671701	112673000	+	0	NA	TTS (NM_006135)	TTS (NM_006135)	-1962	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
196407	chr6	43367321	43367780	+	0	NA	intron (NM_014345, intron 1 of 9)	L2b|LINE|L2	2097	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
223934	chr9	749621	750200	+	0	NA	Intergenic	Intergenic	43233	NM_001354342	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
62147	chr13	96984051	96984350	+	0	NA	promoter-TSS (NR_051966)	promoter-TSS (NR_051966)	-28	NR_051966	100887754		NR_051966		LINC00359	-	long intergenic non-protein coding RNA 359	ncRNA
128689	chr2	61529521	61530180	+	0	NA	intron (NM_003400, intron 2 of 24)	intron (NM_003400, intron 2 of 24)	8506	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
167503	chr3	129224321	129224580	+	0	NA	Intergenic	AluJb|SINE|Alu	-25156	NM_016128	22820		NM_016128	ENSG00000181789	COPG1	COPG	COPI coat complex subunit gamma 1	protein-coding
38572	chr11	46105021	46105530	+	0	NA	intron (NR_147890, intron 1 of 18)	intron (NR_147890, intron 1 of 18)	15544	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
17207	chr1	156261201	156261400	+	0	NA	intron (NM_001323616, intron 15 of 22)	intron (NM_001323616, intron 15 of 22)	-13183	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
69395	chr14	94045171	94045330	+	0	NA	intron (NM_023112, intron 5 of 5)	MER102c|DNA|hAT-Charlie	18910	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
25861	chr10	11243601	11244080	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	78810	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
63723	chr14	21207471	21207630	+	0	NA	promoter-TSS (NR_038971)	promoter-TSS (NR_038971)	-650	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
21869	chr1	207669301	207669900	+	0	NA	intron (NM_175710, intron 1 of 11)	CpG	24467	NM_175710	1379		NM_175710	ENSG00000197721	CR1L	-	complement C3b/C4b receptor 1 like	protein-coding
112969	chr19	7857951	7858450	+	0	NA	exon (NM_001159944, exon 13 of 20)	exon (NM_001159944, exon 13 of 20)	16190	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
171598	chr3	197253521	197254180	+	0	NA	intron (NM_001204386, intron 4 of 24)	L1MD1|LINE|L1	40098	NR_039960	100616216		NR_039960	ENSG00000265850	MIR4797	-	microRNA 4797	ncRNA
80389	chr16	2546451	2546950	+	0	NA	intron (NM_031268, intron 1 of 10)	intron (NM_031268, intron 1 of 10)	8679	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
128717	chr2	61762001	61762730	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	91695	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
224203	chr9	5500071	5500230	+	0	NA	Intergenic	LTR46|LTR|ERV1	-10381	NM_025239	80380		NM_025239	ENSG00000197646	PDCD1LG2	B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2	programmed cell death 1 ligand 2	protein-coding
155555	chr22	38722521	38722780	+	0	NA	intron (NM_004286, intron 5 of 11)	intron (NM_004286, intron 5 of 11)	16706	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
523	chr1	1219221	1220450	+	0	NA	intron (NM_016547, intron 4 of 6)	intron (NM_016547, intron 4 of 6)	-5682	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
43571	chr11	83064351	83064450	+	0	NA	intron (NM_014488, intron 1 of 5)	AluJb|SINE|Alu	7062	NM_001286061	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
1150	chr1	2192551	2193230	+	0	NA	TTS (NR_168005)	TTS (NR_168005)	1882	NM_001256947	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
51445	chr12	52041601	52043230	+	0	NA	intron (NM_001202233, intron 2 of 7)	intron (NM_001202233, intron 2 of 7)	4700	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
211750	chr7	107187721	107187980	+	0	NA	intron (NM_001244262, intron 6 of 10).2	L2c|LINE|L2	18847	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
173986	chr4	26209551	26209680	+	0	NA	intron (NM_001374401, intron 1 of 11)	intron (NM_001374401, intron 1 of 11)	46157	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
63188	chr13	113747221	113747480	+	0	NA	Intergenic	MIR|SINE|MIR	3739	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
130182	chr2	83340551	83340650	+	0	NA	Intergenic	L1MC1|LINE|L1	-182214	NR_146482	101928031		NR_146482	ENSG00000232548	LINC01809	-	long intergenic non-protein coding RNA 1809	ncRNA
121787	chr19	47790051	47791200	+	0	NA	Intergenic	Intergenic	11922	NM_003009	6415		NM_003009	ENSG00000178980	SELENOW	SEPW1|selW	selenoprotein W	protein-coding
37928	chr11	34233901	34234650	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	123735	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
700	chr1	1404671	1405030	+	0	NA	intron (NM_001318485, intron 3 of 3)	intron (NM_001318485, intron 3 of 3)	2443	NM_017971	55052		NM_017971	ENSG00000242485	MRPL20	L20mt|MRP-L20|bL20m	mitochondrial ribosomal protein L20	protein-coding
42267	chr11	68212371	68213200	+	0	NA	intron (NR_161378, intron 1 of 9)	CpG	511	NM_001369426	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
229368	chr9	121069401	121069700	+	0	NA	intron (NM_001317163, intron 1 of 40)	AluJo|SINE|Alu	5315	NM_001317163	727		NM_001735	ENSG00000106804	C5	C5D|C5a|C5b|CPAMD4|ECLZB	complement C5	protein-coding
92731	chr17	14300421	14301700	+	0	NA	promoter-TSS (NR_130138)	promoter-TSS (NR_130138)	-21	NR_130138	9953		NM_006041	ENSG00000125430	HS3ST3B1	3-OST-3B|3OST3B1|h3-OST-3B	heparan sulfate-glucosamine 3-sulfotransferase 3B1	protein-coding
215277	chr7	157018321	157018580	+	0	NA	Intergenic	CpG	7593	NR_038835	645249		NR_038835	ENSG00000243479	MNX1-AS1	CCAT5|MAYA	MNX1 antisense RNA 1 (head to head)	ncRNA
57500	chr12	122096951	122097550	+	0	NA	intron (NM_014938, intron 1 of 16)	FRAM|SINE|Alu	18494	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
235341	chrX	44055051	44055150	+	0	NA	Intergenic	Intergenic	-81710	NM_000266	4693		NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	norrin cystine knot growth factor NDP	protein-coding
63881	chr14	21777201	21777700	+	0	NA	Intergenic	L1MEc|LINE|L1	-106433	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
26745	chr10	22698071	22698550	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	15798	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
24428	chr1	243526001	243526500	+	0	NA	intron (NM_005465, intron 12 of 13)	MLT2F|LTR|ERVL	180074	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
169196	chr3	156740821	156741080	+	0	NA	Intergenic	LTR12C|LTR|ERV1	64286	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
222507	chr8	140515221	140515480	+	0	NA	non-coding (NR_040712, exon 3 of 3)	non-coding (NR_040712, exon 3 of 3)	3354	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
48669	chr12	10540771	10541150	+	0	NA	Intergenic	L1PA16|LINE|L1	-12419	NR_146455	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
48003	chr12	6923301	6923500	+	0	NA	3' UTR (NM_001975, exon 12 of 12)	3' UTR (NM_001975, exon 12 of 12)	-1059	NM_001007026	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
206720	chr7	36536621	36536880	+	0	NA	intron (NM_001177506, intron 16 of 21)	AluSx1|SINE|Alu	63370	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
107985	chr18	58653301	58654250	+	0	NA	Intergenic	L1M2|LINE|L1	-17690	NM_173844	10892		NM_006785	ENSG00000172175	MALT1	IMD12|MLT|MLT1|PCASP1	MALT1 paracaspase	protein-coding
110965	chr19	2948121	2948650	+	0	NA	Intergenic	AluY|SINE|Alu	-3414	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
209523	chr7	77054171	77054530	+	0	NA	intron (NM_001351348, intron 4 of 5)	intron (NM_001351348, intron 4 of 5)	6531	NM_001351348	100505767		NM_001351348	ENSG00000205482	SPDYE18	-	speedy/RINGO cell cycle regulator family member E18	protein-coding
117802	chr19	29876171	29876530	+	0	NA	Intergenic	Intergenic	-47307	NM_001252641	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
222886	chr8	142777021	142778180	+	0	NA	promoter-TSS (NM_177477)	promoter-TSS (NM_177477)	272	NM_177457	66004		NM_177457	ENSG00000180155	LYNX1	-	Ly6/neurotoxin 1	protein-coding
99476	chr17	50167371	50167900	+	0	NA	exon (NM_000023, exon 3 of 10)	exon (NM_000023, exon 3 of 10)	1630	NM_001135697	6442		NM_000023	ENSG00000108823	SGCA	50DAG|ADL|DAG2|DMDA2|LGMD2D|LGMDR3|SCARMD1|adhalin	sarcoglycan alpha	protein-coding
213709	chr7	140228201	140232450	+	0	NA	Intergenic	CpG	53064	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
45026	chr11	117024451	117024750	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	73828	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
179290	chr4	177311471	177312480	+	0	NA	intron (NM_018248, intron 1 of 9)	L2c|LINE|L2	2101	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
171566	chr3	196944001	196944400	+	0	NA	TTS (NM_001355243)	TTS (NM_001355243)	1526	NM_001355243	152217		NM_138487	ENSG00000270170	NCBP2AS2	HIAR|KRASIM|NCBP2-AS2	NCBP2 antisense 2 (head to head)	protein-coding
23981	chr1	235209921	235210180	+	0	NA	intron (NM_031371, intron 16 of 22)	AluJo|SINE|Alu	-19934	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
97594	chr17	44112101	44112380	+	0	NA	intron (NM_001015053, intron 2 of 26)	intron (NM_001015053, intron 2 of 26)	-3672	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
93796	chr17	20467151	20467850	+	0	NA	promoter-TSS (NM_001367292)	promoter-TSS (NM_001367292)	35	NM_001367292	284194		NM_001042685	ENSG00000170298	LGALS9B	-	galectin 9B	protein-coding
96458	chr17	40223971	40225130	+	0	NA	intron (NM_133264, intron 1 of 7)	intron (NM_133264, intron 1 of 7)	5246	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
170663	chr3	187412321	187412700	+	0	NA	Intergenic	L1PA2|LINE|L1	-34536	NR_146716	105374261		NR_146716		LINC02041	-	long intergenic non-protein coding RNA 2041	ncRNA
181823	chr5	52798071	52798230	+	0	NA	intron (NM_181501, intron 1 of 28)	intron (NM_181501, intron 1 of 28)	10234	NM_015946	53918		NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota mRNA surveillance and ribosome rescue factor	protein-coding
139070	chr2	218859501	218860200	+	0	NA	promoter-TSS (NM_006522)	promoter-TSS (NM_006522)	45	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
229396	chr9	121188751	121189050	+	0	NA	intron (NM_016322, intron 4 of 7)	L1MB7|LINE|L1	-12583	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
64536	chr14	24438601	24439200	+	0	NA	TTS (NM_001290293)	TTS (NM_001290293)	3901	NM_020195	56948		NM_020195	ENSG00000100445	SDR39U1	C14orf124|HCDI	short chain dehydrogenase/reductase family 39U member 1	protein-coding
189832	chr5	177089251	177089350	+	0	NA	promoter-TSS (NM_022963)	promoter-TSS (NM_022963)	-250	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
153463	chr22	25400201	25400400	+	0	NA	intron (NM_001135772, intron 1 of 6)	AluY|SINE|Alu	5108	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
143793	chr20	32454151	32454400	+	0	NA	intron (NM_080616, intron 3 of 7)	intron (NM_080616, intron 3 of 7)	29215	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
169168	chr3	156673671	156676400	+	0	NA	non-coding (NR_027954, exon 1 of 1)	non-coding (NR_027954, exon 1 of 1)	109	NM_001184717	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
43620	chr11	83188201	83188400	+	0	NA	promoter-TSS (NR_133914)	promoter-TSS (NR_133914)	-816	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
201532	chr6	149146901	149147100	+	0	NA	Intergenic	L1PA7|LINE|L1	-70924	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
58567	chr12	132423301	132423800	+	0	NA	Intergenic	Intergenic	-66601	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
54952	chr12	96245051	96245350	+	0	NA	intron (NM_005230, intron 2 of 4)	intron (NM_005230, intron 2 of 4)	-10298	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
70104	chr14	100233001	100233400	+	0	NA	Intergenic	AluJb|SINE|Alu	-5944	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
22777	chr1	224416121	224416630	+	0	NA	intron (NM_001115113, intron 6 of 13)	AluY|SINE|Alu	-18064	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
185755	chr5	132226671	132226830	+	0	NA	5' UTR (NM_001365679, exon 2 of 16)	5' UTR (NM_001365679, exon 2 of 16)	341	NM_004199	8974		NM_004199	ENSG00000072682	P4HA2	MYP25|lncRNA-PE	prolyl 4-hydroxylase subunit alpha 2	protein-coding
29472	chr10	70560401	70560600	+	0	NA	intron (NM_014431, intron 18 of 19)	MIRc|SINE|MIR	42241	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
157677	chr22	46288071	46289000	+	0	NA	exon (NM_017931, exon 11 of 14)	exon (NM_017931, exon 11 of 14)	8125	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
72352	chr15	31339601	31339830	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	12880	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
73832	chr15	49171301	49171500	+	0	NA	intron (NR_147895, intron 1 of 10)	(TTTC)n|Simple_repeat|Simple_repeat	1153	NM_002044	2585		NM_002044	ENSG00000156958	GALK2	GK2	galactokinase 2	protein-coding
105876	chr18	3246921	3248280	+	0	NA	promoter-TSS (NM_001303047)	promoter-TSS (NM_001303047)	70	NM_001303047	10627		NM_006471	ENSG00000101608	MYL12A	HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B	myosin light chain 12A	protein-coding
170764	chr3	188446871	188447030	+	0	NA	intron (NR_164692, intron 3 of 9)	intron (NR_164692, intron 3 of 9)	121716	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
37364	chr11	15650101	15650600	+	0	NA	intron (NR_169508, intron 3 of 4)	CpG	26245	NR_169508	105376569		NM_001293172	ENSG00000254946	LINC02751	-	long intergenic non-protein coding RNA 2751	ncRNA
18295	chr1	161150151	161150450	+	0	NA	Intergenic	AluY|SINE|Alu	-3678	NM_016406	51506		NM_016406	ENSG00000143222	UFC1	HSPC155|NEDSG	ubiquitin-fold modifier conjugating enzyme 1	protein-coding
182858	chr5	69640051	69640950	+	0	NA	intron (NR_027386, intron 5 of 5)	AluJr|SINE|Alu	9355	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
120804	chr19	45465051	45465600	+	0	NA	Intergenic	Intergenic	-2671	NM_001114171	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
110851	chr19	2596121	2596580	+	0	NA	intron (NM_052847, intron 2 of 4)	AluSx|SINE|Alu	-34365	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
141120	chr2	238909121	238909380	+	0	NA	intron (NM_001271893, intron 1 of 1)	L1MD2|LINE|L1	17019	NR_034162	401039		NM_001001698	ENSG00000227744	LINC01940	-	long intergenic non-protein coding RNA 1940	ncRNA
61969	chr13	79445921	79446400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-34964	NM_001161407	54602		NM_019080	ENSG00000102471	NDFIP2	N4WBP5A	Nedd4 family interacting protein 2	protein-coding
65961	chr14	56131571	56132130	+	0	NA	intron (NM_021255, intron 1 of 5)	AluJo|SINE|Alu	13439	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
115938	chr19	16651721	16651980	+	0	NA	TTS (NM_001300925)	TTS (NM_001300925)	8294	NM_001300925	79086		NM_024104	ENSG00000214046	SMIM7	C19orf42	small integral membrane protein 7	protein-coding
50544	chr12	47961671	47962330	+	0	NA	Intergenic	AluSx|SINE|Alu	-1547	NM_024056	79022		NM_024056	ENSG00000134291	TMEM106C	-	transmembrane protein 106C	protein-coding
237828	chrX	130023801	130024650	+	0	NA	intron (NM_001379451, intron 6 of 13)	intron (NM_001379451, intron 6 of 13)	41590	NM_021946	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
174152	chr4	36246951	36247450	+	0	NA	intron (NR_122079, intron 2 of 4)	AluSp|SINE|Alu	-2686	NR_146894	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
35552	chr11	1632301	1632700	+	0	NA	Intergenic	LTR67B|LTR|ERVL	2697	NM_001001480	439915		NM_001001480	ENSG00000185940	KRTAP5-5	KRTAP5-11|KRTAP5.5	keratin associated protein 5-5	protein-coding
11583	chr1	91550721	91551630	+	0	NA	Intergenic	Intergenic	50067	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
23792	chr1	234154671	234154900	+	0	NA	intron (NM_173508, intron 2 of 7)	MamTip1|DNA|hAT-Tip100	-59426	NM_001300845	148641		NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
172834	chr4	3195321	3195580	+	0	NA	intron (NM_002111, intron 40 of 66)	intron (NM_002111, intron 40 of 66)	-48919	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
232476	chr9	136231871	136232430	+	0	NA	intron (NM_181701, intron 1 of 11)	MER6B|DNA|TcMar-Tigger	13662	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
223078	chr8	143405701	143405900	+	0	NA	Intergenic	Intergenic	-11879	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
14431	chr1	144374301	144374950	+	0	NA	promoter-TSS (NM_001164262)	promoter-TSS (NM_001164262)	-966	NM_001144032	730262		NM_001144032	ENSG00000271567	PPIAL4E	COAS2|PPIAL4F	peptidylprolyl isomerase A like 4E	protein-coding
18260	chr1	161069401	161070900	+	0	NA	promoter-TSS (NM_001287602)	promoter-TSS (NM_001287602)	-259	NM_001287602	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
164864	chr3	71069471	71070230	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-4926	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
151121	chr21	44887251	44888280	+	0	NA	intron (NM_001127491, intron 14 of 15)	intron (NM_001127491, intron 14 of 15)	-13862	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
123910	chr19	55348101	55348780	+	0	NA	TTS (NM_032701)	TTS (NM_032701)	6279	NM_144613	125965		NM_144613	ENSG00000160471	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit 6B2	protein-coding
935	chr1	1726951	1727150	+	0	NA	TTS (NM_182838)	TTS (NM_182838)	-2693	NM_001313982	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
50052	chr12	44588001	44588400	+	0	NA	intron (NM_001145108, intron 15 of 19)	intron (NM_001145108, intron 15 of 19)	287461	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
143694	chr20	32155371	32155800	+	0	NA	intron (NM_014742, intron 13 of 17)	intron (NM_014742, intron 13 of 17)	34775	NR_002781	128854		NM_178465	ENSG00000235217	TSPY26P	TSPYL3|bA392M18.1	testis specific protein Y-linked 26, pseudogene	pseudo
35044	chr11	584671	584830	+	0	NA	intron (NM_001286582, intron 3 of 17)	AluSq|SINE|Alu	8280	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
66175	chr14	60650271	60650630	+	0	NA	promoter-TSS (NM_005982)	promoter-TSS (NM_005982)	-973	NM_005982	6495		NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
159479	chr3	14148601	14149400	+	0	NA	intron (NR_148951, intron 9 of 13)	intron (NR_148951, intron 9 of 13)	23948	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
229431	chr9	121362821	121363480	+	0	NA	intron (NM_001270526, intron 1 of 6)	intron (NM_001270526, intron 1 of 6)	7100	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
110357	chr19	1893701	1894230	+	0	NA	Intergenic	L1MB3|LINE|L1	-8469	NM_031213	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
133113	chr2	112650121	112650900	+	0	NA	intron (NM_005415, intron 4 of 10)	AluSx1|SINE|Alu	4571	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
184640	chr5	107456351	107456650	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	214437	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
141674	chr2	241799951	241800250	+	0	NA	intron (NM_022134, intron 2 of 3)	intron (NM_022134, intron 2 of 3)	-9093	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
206173	chr7	28093701	28093900	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-86657	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
100748	chr17	63944671	63945780	+	0	NA	intron (NM_000334, intron 19 of 23)	intron (NM_000334, intron 19 of 23)	-12894	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
46087	chr11	122838051	122839280	+	0	NA	intron (NM_019604, intron 1 of 9)	intron (NM_019604, intron 1 of 9)	165	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
63206	chr13	113819701	113819900	+	0	NA	TTS (NM_000820)	TTS (NM_000820)	4190	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
36019	chr11	2911201	2912030	+	0	NA	intron (NM_183233, intron 5 of 10)	intron (NM_183233, intron 5 of 10)	-8040	NR_169304	5003		NM_007105	ENSG00000254827	SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	SLC22A18 antisense RNA	ncRNA
221098	chr8	117615351	117615550	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	94737	NM_080651	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
170286	chr3	184321721	184322200	+	0	NA	exon (NM_001194946, exon 11 of 34)	exon (NM_001194946, exon 11 of 34)	1697	NM_004953	1981		NM_004953	ENSG00000114867	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma 1	protein-coding
45158	chr11	117204421	117205080	+	0	NA	3' UTR (NM_001001522, exon 5 of 5)	3' UTR (NM_001001522, exon 5 of 5)	-2836	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
205824	chr7	24756801	24757980	+	0	NA	promoter-TSS (NM_001127453)	promoter-TSS (NM_001127453)	74	NM_001127453	1687		NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
120037	chr19	41963801	41964400	+	0	NA	Intergenic	AluY|SINE|Alu	-4779	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
74490	chr15	60005051	60005150	+	0	NA	exon (NM_012182, exon 2 of 2)	exon (NM_012182, exon 2 of 2)	789	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
203184	chr6	167151151	167151880	+	0	NA	Intergenic	Intergenic	6465	NM_005299	2853		NM_005299	ENSG00000120436	GPR31	12-HETER|HETER|HETER1	G protein-coupled receptor 31	protein-coding
147645	chr20	62195001	62195200	+	0	NA	intron (NR_169210, intron 3 of 8)	AluYa5|SINE|Alu	12072	NR_169200	26164		NM_015666	ENSG00000101181	MTG2	GTPBP5|ObgH1|dJ1005F21.2	mitochondrial ribosome associated GTPase 2	protein-coding
176322	chr4	87839371	87839600	+	0	NA	intron (NM_001184694, intron 3 of 3)	intron (NM_001184694, intron 3 of 3)	4782	NM_001291183	56955		NM_020203	ENSG00000152595	MEPE	OF45	matrix extracellular phosphoglycoprotein	protein-coding
169072	chr3	153442721	153443340	+	0	NA	intron (NR_146713, intron 5 of 6)	intron (NR_146713, intron 5 of 6)	-41465	NR_160966	152118		NR_160966	ENSG00000237787	LINC02877	C3orf79	long intergenic non-protein coding RNA 2877	ncRNA
217232	chr8	26575351	26576500	+	0	NA	intron (NM_001197293, intron 1 of 13)	intron (NM_001197293, intron 1 of 13)	-2020	NM_001386	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
197015	chr6	53324601	53324950	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	12842	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
172007	chr4	961721	962530	+	0	NA	intron (NM_001347, intron 18 of 22)	intron (NM_001347, intron 18 of 22)	11444	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
10558	chr1	67166251	67166550	+	0	NA	promoter-TSS (NM_144701)	promoter-TSS (NM_144701)	-54	NM_144701	149233		NM_144701	ENSG00000162594	IL23R	PSORS7	interleukin 23 receptor	protein-coding
47477	chr12	3906771	3906930	+	0	NA	Intergenic	Intergenic	-33402	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
29734	chr10	72105151	72105550	+	0	NA	intron (NM_001369102, intron 10 of 11)	LTR28B|LTR|ERV1	-16318	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
19647	chr1	180232801	180233030	+	0	NA	intron (NM_033343, intron 1 of 5)	CpG-2007	2651	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
79894	chr16	1561901	1562100	+	0	NA	exon (NM_014714, exon 18 of 31)	exon (NM_014714, exon 18 of 31)	-18527	NR_135176	105371046		NR_135176	ENSG00000260989	LOC105371046	-	uncharacterized LOC105371046	ncRNA
81340	chr16	4770821	4772330	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4413	NM_001303450	26048		NM_021646	ENSG00000103199	ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
92120	chr17	7591521	7591980	+	0	NA	3' UTR (NM_004860, exon 17 of 17)	3' UTR (NM_004860, exon 17 of 17)	-1656	NM_006942	6665		NM_006942	ENSG00000129194	SOX15	SOX20|SOX26|SOX27	SRY-box transcription factor 15	protein-coding
138755	chr2	215680901	215681700	+	0	NA	intron (NR_037195, intron 5 of 9)	intron (NR_037195, intron 5 of 9)	-36743	NR_132383	105373869		NR_132383	ENSG00000230838	LINC01614	LCAL4	long intergenic non-protein coding RNA 1614	ncRNA
132424	chr2	105827521	105828150	+	0	NA	intron (NM_001004722, intron 2 of 3)	L1MD2|LINE|L1	-24012	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
54617	chr12	92591621	92591880	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-111093	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
53867	chr12	70245521	70245780	+	0	NA	intron (NR_037615, intron 1 of 16)	intron (NR_037615, intron 1 of 16)	1936	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
220380	chr8	100156221	100156480	+	0	NA	Intergenic	L2|LINE|L2	-1688	NM_172218	6674		NM_003114	ENSG00000104450	SPAG1	CILD28|CT140|DNAAF13|HEL-S-268|HSD-3.8|SP75|TPIS	sperm associated antigen 1	protein-coding
1542	chr1	3454221	3455450	+	0	NA	intron (NM_014448, intron 1 of 14)	CpG	170	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
74465	chr15	59762601	59762800	+	0	NA	Intergenic	Intergenic	-73380	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
45851	chr11	119389701	119390250	+	0	NA	intron (NR_034160, intron 1 of 3)	MLT1C|LTR|ERVL-MaLR	8197	NR_034160	100499227		NR_034160		USP2-AS1	THY1-AS1|gLINC	USP2 antisense RNA 1	ncRNA
41859	chr11	67186951	67187250	+	0	NA	intron (NM_012308, intron 5 of 20)	L1M4c|LINE|L1	-52914	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
114859	chr19	13859601	13860080	+	0	NA	Intergenic	Intergenic	-2196	NR_146095	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
211882	chr7	111093101	111093500	+	0	NA	intron (NM_018334, intron 1 of 1)	intron (NM_018334, intron 1 of 1)	2173	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
201905	chr6	151371371	151371530	+	0	NA	intron (NM_020861, intron 2 of 2)	intron (NM_020861, intron 2 of 2)	20109	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
91637	chr17	5424071	5424230	+	0	NA	intron (NM_001160246, intron 3 of 3)	AluJr|SINE|Alu	-4411	NM_001320653	4927		NM_002532	ENSG00000108559	NUP88	FADS4	nucleoporin 88	protein-coding
78532	chr15	92952521	92953350	+	0	NA	intron (NM_001271, intron 13 of 38)	intron (NM_001271, intron 13 of 38)	48536	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
149748	chr21	34543971	34544300	+	0	NA	intron (NM_004414, intron 1 of 3)	MER5A|DNA|hAT-Charlie	-17125	NM_001331016	1827		NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
9715	chr1	53127251	53127950	+	0	NA	intron (NM_001287595, intron 2 of 10)	intron (NM_001287595, intron 2 of 10)	15038	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
75125	chr15	64561051	64561350	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	100622	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
1416	chr1	2567151	2567480	+	0	NA	intron (NR_121638, intron 1 of 3)	intron (NR_121638, intron 1 of 3)	780	NR_121638	100996583		NR_121638	ENSG00000228037	LOC100996583	-	uncharacterized LOC100996583	ncRNA
193628	chr6	30785621	30785880	+	0	NA	intron (NR_138037, intron 1 of 3)	L1MB7|LINE|L1	18925	NR_138037	105375013		NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20	ncRNA
181241	chr5	39198801	39199000	+	0	NA	intron (NM_199335, intron 2 of 17)	(ATAC)n|Simple_repeat|Simple_repeat	20663	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
96810	chr17	41924201	41924400	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5278	NM_001303274	47		NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
141773	chr2	242047121	242047380	+	0	NA	TTS (NR_146651)	TTS (NR_146651)	36888	NR_146651	105373979		NR_146651	ENSG00000232002	LINC01880	-	long intergenic non-protein coding RNA 1880	ncRNA
230445	chr9	128165801	128166000	+	0	NA	TTS (NM_001131018)	TTS (NM_001131018)	5635	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
22257	chr1	212631121	212631380	+	0	NA	Intergenic	Intergenic	6776	NM_153606	149647		NM_153606	ENSG00000162771	GARIN4	FAM71A|GARI-L4|GARIL4	golgi associated RAB2 interactor family member 4	protein-coding
177109	chr4	108088251	108088550	+	0	NA	intron (NM_016269, intron 4 of 11)	intron (NM_016269, intron 4 of 11)	78397	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
201655	chr6	149487251	149487750	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-2486	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
198539	chr6	106549171	106549580	+	0	NA	intron (NM_001371242, intron 13 of 21)	MIR3|SINE|MIR	37520	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
988	chr1	1833201	1833600	+	0	NA	intron (NM_001282539, intron 1 of 10)	intron (NM_001282539, intron 1 of 10)	-53369	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
208458	chr7	66982671	66982900	+	0	NA	Intergenic	AluJr|SINE|Alu	12801	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
154274	chr22	31633351	31634300	+	0	NA	intron (NM_001326416, intron 3 of 10)	intron (NM_001326416, intron 3 of 10)	-3001	NM_014338	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
104470	chr17	81118071	81118230	+	0	NA	TTS (NM_001144888)	TTS (NM_001144888)	7223	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
218812	chr8	59090651	59090950	+	0	NA	intron (NM_014729, intron 1 of 8)	L2c|LINE|L2	28347	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
235525	chrX	47221371	47222230	+	0	NA	intron (NM_006201, intron 1 of 15)	intron (NM_006201, intron 1 of 15)	-1218	NM_001170460	5127		NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
21520	chr1	205805101	205805800	+	0	NA	intron (NM_173854, intron 2 of 10)	intron (NM_173854, intron 2 of 10)	7748	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
223162	chr8	143537401	143538000	+	0	NA	intron (NM_015117, intron 2 of 11)	intron (NM_015117, intron 2 of 11)	3747	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
28659	chr10	59905811	59907230	+	0	NA	promoter-TSS (NM_005436)	promoter-TSS (NM_005436)	36	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
184996	chr5	115166851	115167230	+	0	NA	intron (NM_018700, intron 1 of 9)	MER52A|LTR|ERV1	2868	NM_001300759	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
69025	chr14	91714621	91715150	+	0	NA	intron (NM_024764, intron 5 of 26).2	L1ME1|LINE|L1	17201	NM_024764	79820		NM_024764	ENSG00000133962	CATSPERB	C14orf161|CatSper(beta)	cation channel sperm associated auxiliary subunit beta	protein-coding
220234	chr8	96595371	96595730	+	0	NA	intron (NM_002998, intron 2 of 4)	intron (NM_002998, intron 2 of 4)	-49692	NM_016134	10404		NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
159446	chr3	13879521	13881050	+	0	NA	promoter-TSS (NM_004625)	promoter-TSS (NM_004625)	-214	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
155632	chr22	38927051	38927680	+	0	NA	Intergenic	CpG	-30157	NM_001193289	100913187		NM_001193289		APOBEC3A_B	A3A|APOBEC3A	APOBEC3A and APOBEC3B deletion hybrid	protein-coding
212178	chr7	116962271	116962650	+	0	NA	intron (NR_161422, intron 1 of 14)	L1PA8|LINE|L1	-8126	NR_002330	93653		NR_002330	ENSG00000227199	ST7-AS1	ST7AS1|ST7OT1	ST7 antisense RNA 1	ncRNA
133736	chr2	127410651	127411680	+	0	NA	Intergenic	Intergenic	-7262	NM_001375603	5624		NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C, inactivator of coagulation factors Va and VIIIa	protein-coding
127135	chr2	37665371	37665530	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	6192	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
168885	chr3	152310951	152311400	+	0	NA	intron (NR_164857, intron 3 of 10)	AluSg|SINE|Alu	12161	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
162954	chr3	49606651	49607150	+	0	NA	intron (NM_003458, intron 1 of 11)	AluSx1|SINE|Alu	52423	NM_003458	8927		NM_003458	ENSG00000164061	BSN	ZNF231	bassoon presynaptic cytomatrix protein	protein-coding
146278	chr20	49097721	49097980	+	0	NA	TTS (NM_001256135)	TTS (NM_001256135)	51538	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
134256	chr2	135529451	135529550	+	0	NA	intron (NM_032143, intron 1 of 20)	AluSx1|SINE|Alu	1085	NM_001286568	84083		NM_032143	ENSG00000121988	ZRANB3	4933425L19Rik|AH2	zinc finger RANBP2-type containing 3	protein-coding
21671	chr1	206701871	206702300	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	17180	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
25679	chr10	8417771	8418250	+	0	NA	Intergenic	AluJr|SINE|Alu	-149705	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
232449	chr9	136120971	136121130	+	0	NA	TTS (NR_165241)	TTS (NR_165241)	2030	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
24646	chr1	246908521	246908780	+	0	NA	intron (NR_136586, intron 4 of 36)	AluY|SINE|Alu	22708	NM_015446	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
55987	chr12	110284401	110285230	+	0	NA	intron (NM_170665, intron 3 of 19)	intron (NM_170665, intron 3 of 19)	3568	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
102447	chr17	75693251	75693550	+	0	NA	intron (NM_001301855, intron 4 of 11)	intron (NM_001301855, intron 4 of 11)	26062	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
120210	chr19	42294471	42294930	+	0	NA	exon (NM_001304815, exon 20 of 21)	exon (NM_001304815, exon 20 of 21)	-7432	NM_199285	284338		NM_199285	ENSG00000188368	PRR19	-	proline rich 19	protein-coding
190117	chr5	177978851	177978950	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	17342	NM_006261	5626		NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
227707	chr9	93032371	93033180	+	0	NA	exon (NM_001083536, exon 16 of 18)	exon (NM_001083536, exon 16 of 18)	-17831	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
6307	chr1	27630351	27630830	+	0	NA	intron (NM_005248, intron 1 of 12)	(GA)n|Simple_repeat|Simple_repeat	-3993	NM_001042729	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
163362	chr3	50470551	50470850	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	32934	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
173578	chr4	10122601	10123000	+	0	NA	Intergenic	Intergenic	-6001	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
80187	chr16	2132121	2132580	+	0	NA	promoter-TSS (NR_039741)	promoter-TSS (NR_039741)	-769	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
184968	chr5	113457471	113457930	+	0	NA	intron (NM_001085377, intron 1 of 18)	LTR12C|LTR|ERV1	-22711	NM_032028	83942		NM_032028	ENSG00000212122	TSSK1B	FKSG81|SPOGA4|STK22D|TSK1|TSSK1	testis specific serine kinase 1B	protein-coding
162604	chr3	48698001	48698650	+	0	NA	intron (NM_016291, intron 1 of 5)	intron (NM_016291, intron 1 of 5)	-12410	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
18486	chr1	161631021	161631280	+	0	NA	promoter-TSS (NM_001271036)	promoter-TSS (NM_001271036)	26	NM_001271035	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
216625	chr8	22099251	22099430	+	0	NA	exon (NM_001354250, exon 9 of 17)	exon (NM_001354250, exon 9 of 17)	10079	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
33872	chr10	124414451	124414750	+	0	NA	intron (NM_001322969, intron 1 of 10)	intron (NM_001322969, intron 1 of 10)	4323	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
5656	chr1	26289201	26289500	+	0	NA	intron (NM_001077262, intron 4 of 10)	intron (NM_001077262, intron 4 of 10)	9264	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
105849	chr18	3012351	3014230	+	0	NA	promoter-TSS (NM_001375808)	promoter-TSS (NM_001375808)	-146	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
161815	chr3	45554171	45554530	+	0	NA	Intergenic	(CACAC)n|Simple_repeat|Simple_repeat	-40401	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
235847	chrX	49921571	49921730	+	0	NA	promoter-TSS (NM_001272102)	promoter-TSS (NM_001272102)	-946	NM_001272102	1184		NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENT1|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	chloride voltage-gated channel 5	protein-coding
45396	chr11	118334001	118334200	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	8605	NM_000732	915		NM_000732	ENSG00000167286	CD3D	CD3-DELTA|CD3DELTA|IMD19|T3D	CD3 delta subunit of T-cell receptor complex	protein-coding
62349	chr13	99197301	99197980	+	0	NA	non-coding (NR_036532, exon 2 of 2)	non-coding (NR_036532, exon 2 of 2)	3115	NR_036532	100289373		NR_036531	ENSG00000228889	UBAC2-AS1	-	UBAC2 antisense RNA 1	ncRNA
113265	chr19	8511951	8512630	+	0	NA	intron (NM_001146175, intron 4 of 7)	intron (NM_001146175, intron 4 of 7)	1877	NM_032370	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
231151	chr9	129871671	129872230	+	0	NA	intron (NM_001110303, intron 15 of 25)	AluSq2|SINE|Alu	2345	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
215026	chr7	152413071	152413230	+	0	NA	intron (NM_170606, intron 1 of 58)	AluJo|SINE|Alu	22853	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
48871	chr12	12461321	12462180	+	0	NA	intron (NM_058169, intron 3 of 3)	MLT1J|LTR|ERVL-MaLR	101113	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
94642	chr17	30116581	30117780	+	0	NA	promoter-TSS (NR_036149)	promoter-TSS (NR_036149)	-20	NR_036149	100423003		NR_036149	ENSG00000284399	MIR3184	-	microRNA 3184	ncRNA
221066	chr8	116873601	116875200	+	0	NA	promoter-TSS (NR_033886)	promoter-TSS (NR_033886)	-24	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
32897	chr10	110164621	110164880	+	0	NA	Intergenic	AluY|SINE|Alu	-12770	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
15760	chr1	151159901	151160600	+	0	NA	TTS (NM_024575)	TTS (NM_024575)	3601	NM_024575	79626		NM_024575	ENSG00000163154	TNFAIP8L2	TIPE2	TNF alpha induced protein 8 like 2	protein-coding
126697	chr2	30154651	30155330	+	0	NA	intron (NM_001127400, intron 2 of 3)	AluSx|SINE|Alu	7983	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
160180	chr3	23691551	23691650	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-114355	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
162703	chr3	48993871	48994430	+	0	NA	intron (NM_177939, intron 2 of 8)	intron (NM_177939, intron 2 of 8)	3909	NM_177939	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
107492	chr18	47756321	47756650	+	0	NA	Intergenic	Intergenic	174174	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
89949	chr16	89752671	89753050	+	0	NA	intron (NM_001286167, intron 30 of 42)	LTR13|LTR|ERVK	31323	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
34587	chr10	133249251	133249880	+	0	NA	Intergenic	Intergenic	-1680	NR_108079	101927671		NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
182677	chr5	67355171	67355530	+	0	NA	Intergenic	Intergenic	-158551	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
44519	chr11	107591911	107592800	+	0	NA	intron (NM_001308018, intron 1 of 12)	intron (NM_001308018, intron 1 of 12)	1208	NM_018712	55531		NM_018712	ENSG00000110675	ELMOD1	-	ELMO domain containing 1	protein-coding
87556	chr16	71956451	71956550	+	0	NA	intron (NM_181536, intron 16 of 29)	L1MB2|LINE|L1	43478	NM_181536	342372		NM_181536	ENSG00000277481	PKD1L3	-	polycystin 1 like 3, transient receptor potential channel interacting	protein-coding
68581	chr14	89435651	89436680	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	18811	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
83754	chr16	28693221	28693680	+	0	NA	intron (NM_001199142, intron 1 of 20)	AluSz6|SINE|Alu	4892	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
157858	chr22	48912701	48913080	+	0	NA	Intergenic	Intergenic	46120	NR_038944	100128946		NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA
15795	chr1	151269571	151269930	+	0	NA	Intergenic	AluYm1|SINE|Alu	-11772	NM_001304764	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
124833	chr2	7730471	7731600	+	0	NA	Intergenic	MIRb|SINE|MIR	168620	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
48178	chr12	7991471	7991800	+	0	NA	Intergenic	Intergenic	-41081	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
111135	chr19	3275271	3276810	+	0	NA	intron (NM_021938, intron 4 of 12)	CpG-13275	50762	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
114283	chr19	11595921	11596180	+	0	NA	Intergenic	AluSp|SINE|Alu	-1433	NM_001290084	199692		NM_145295	ENSG00000198551	ZNF627	-	zinc finger protein 627	protein-coding
102331	chr17	75404901	75406980	+	0	NA	promoter-TSS (NR_037449)	promoter-TSS (NR_037449)	-129	NR_037449	100500841		NR_037449	ENSG00000264511	MIR3678	mir-3678	microRNA 3678	ncRNA
128332	chr2	54680571	54681130	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-44162	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133532	chr2	120230721	120231080	+	0	NA	Intergenic	Intergenic	-7500	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
95337	chr17	35749951	35750650	+	0	NA	exon (NM_139285, exon 2 of 6)	exon (NM_139285, exon 2 of 6)	2939	NM_139285	246176		NM_139285	ENSG00000270765	GAS2L2	CILD41|GAR17	growth arrest specific 2 like 2	protein-coding
114912	chr19	13949901	13950100	+	0	NA	intron (NM_001146254, intron 1 of 7)	AluSc8|SINE|Alu	-2474	NM_138353	90379		NM_138353	ENSG00000132017	DCAF15	C19orf72	DDB1 and CUL4 associated factor 15	protein-coding
222550	chr8	140603101	140603500	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	32333	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
102004	chr17	74773451	74773900	+	0	NA	non-coding (NR_130954, exon 3 of 6)	non-coding (NR_130954, exon 3 of 6)	2670	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
154992	chr22	37307701	37308530	+	0	NA	intron (NM_001318024, intron 8 of 12)	intron (NM_001318024, intron 8 of 12)	25607	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
118052	chr19	34264301	34264700	+	0	NA	intron (NM_014686, intron 1 of 13)	AluY|SINE|Alu	9946	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
234761	chrX	23745671	23746230	+	0	NA	Intergenic	Intergenic	-2674	NM_001033583	23597		NM_012332	ENSG00000123130	ACOT9	ACATE2|CGI-16|MT-ACT48|MTACT48	acyl-CoA thioesterase 9	protein-coding
5050	chr1	24545021	24545680	+	0	NA	intron (NR_109781, intron 2 of 2)	intron (NR_109781, intron 2 of 2)	10674	NR_109781	100506985		NR_109781		NCMAP-DT	-	NCMAP divergent transcript	ncRNA
148794	chr21	8234001	8234830	+	0	NA	intron (NR_003287, intron 1 of 2)	(TCTC)n|Simple_repeat|Simple_repeat	-15090	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
108260	chr18	63235921	63236380	+	0	NA	intron (NM_000633, intron 2 of 2)	THE1B|LTR|ERVL-MaLR	83619	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
10445	chr1	66261501	66261700	+	0	NA	intron (NM_001037340, intron 4 of 14)	intron (NM_001037340, intron 4 of 14)	-70508	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
158464	chr22	50673121	50673680	+	0	NA	intron (NM_001372044, intron 1 of 23)	intron (NM_001372044, intron 1 of 23)	577	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
29970	chr10	73645071	73645480	+	0	NA	3' UTR (NM_024875, exon 2 of 2)	3' UTR (NM_024875, exon 2 of 2)	-3801	NM_021245	58529		NM_021245	ENSG00000177791	MYOZ1	CS-2|FATZ|MYOZ	myozenin 1	protein-coding
37874	chr11	33869351	33869900	+	0	NA	5' UTR (NM_001142316, exon 1 of 3)	5' UTR (NM_001142316, exon 1 of 3)	253	NM_001142315	4005		NM_005574	ENSG00000135363	LMO2	LMO-2|RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
234490	chrX	18856301	18856500	+	0	NA	Intergenic	L1MEd|LINE|L1	-33896	NR_029379	100132163		NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	ncRNA
53179	chr12	59596401	59598250	+	0	NA	intron (NM_001270622, intron 1 of 5)	intron (NM_001270622, intron 1 of 5)	1296	NM_001270622	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
112587	chr19	6669321	6671200	+	0	NA	promoter-TSS (NM_001376887)	promoter-TSS (NM_001376887)	-100	NM_001376887	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
65802	chr14	54738071	54738230	+	0	NA	intron (NM_015589, intron 4 of 12)	intron (NM_015589, intron 4 of 12)	-16683	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
68996	chr14	91487571	91488300	+	0	NA	intron (NR_158976, intron 3 of 16)	AluJb|SINE|Alu	22375	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
236943	chrX	100768721	100769050	+	0	NA	Intergenic	Intergenic	-36764	NM_001370161	94121		NM_080737	ENSG00000102362	SYTL4	SLP4	synaptotagmin like 4	protein-coding
28351	chr10	46987351	46987450	+	0	NA	exon (NM_001352521, exon 8 of 10)	exon (NM_001352521, exon 8 of 10)	75678	NM_001042358	26095		NM_015605	ENSG00000204179	PTPN20	CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1	protein tyrosine phosphatase non-receptor type 20	protein-coding
193386	chr6	30357521	30358230	+	0	NA	Intergenic	Intergenic	12719	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
211707	chr7	106863621	106863980	+	0	NA	Intergenic	Intergenic	-1482	NM_001282427	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
3500	chr1	16042101	16042300	+	0	NA	Intergenic	Intergenic	-1582	NM_000085	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
185114	chr5	119279201	119279750	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	10716	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
9146	chr1	45512271	45512900	+	0	NA	3' UTR (NM_001330540, exon 4 of 4)	3' UTR (NM_001330540, exon 4 of 4)	9299	NM_181697	5052		NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
218959	chr8	61110271	61110630	+	0	NA	Intergenic	Intergenic	-142702	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
59854	chr13	30566951	30567450	+	0	NA	intron (NM_001370340, intron 1 of 4)	intron (NM_001370340, intron 1 of 4)	50387	NM_001370340	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
148693	chr21	6318321	6318600	+	0	NA	Intergenic	Intergenic	-51124	NM_001322036	102724951		NM_001322036	ENSG00000276077	LINC03105	-	long intergenic non-protein coding RNA 3105	ncRNA
214019	chr7	143263051	143264150	+	0	NA	intron (NM_001143679, intron 1 of 6)	intron (NM_001143679, intron 1 of 6)	159	NM_015917	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
136193	chr2	174557771	174558450	+	0	NA	promoter-TSS (NR_104080).8	promoter-TSS (NR_104080).8	-38	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
83046	chr16	22324801	22325150	+	0	NA	intron (NM_018119, intron 16 of 20).2	intron (NM_018119, intron 16 of 20).2	27566	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
217066	chr8	23450051	23451000	+	0	NA	intron (NM_004901, intron 1 of 12)	intron (NM_004901, intron 1 of 12)	7122	NM_004901	9583		NM_004901	ENSG00000197217	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
152481	chr22	20840751	20841250	+	0	NA	intron (NM_001362863, intron 1 of 53)	MER41A|LTR|ERV1	17811	NM_058004	5297		NM_002650	ENSG00000241973	PI4KA	GIDID2|PI4K-ALPHA|PIK4CA|PMGYCHA|SPG84|pi4K230	phosphatidylinositol 4-kinase alpha	protein-coding
200086	chr6	130165921	130166280	+	0	NA	intron (NM_001258275, intron 10 of 13)	intron (NM_001258275, intron 10 of 13)	49785	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
169147	chr3	156481871	156482030	+	0	NA	intron (NM_172160, intron 8 of 13)	intron (NM_172160, intron 8 of 13)	-35014	NR_046618	100874084		NR_046618	ENSG00000242370	KCNAB1-AS1	-	KCNAB1 antisense RNA 1	ncRNA
30613	chr10	80197921	80198850	+	0	NA	intron (NM_001278408, intron 1 of 16)	MLT1J|LTR|ERVL-MaLR	6106	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
120128	chr19	42203101	42203300	+	0	NA	intron (NR_073049, intron 3 of 4)	intron (NR_073049, intron 3 of 4)	14477	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
196450	chr6	43505571	43505730	+	0	NA	non-coding (NR_027394, exon 10 of 10)	non-coding (NR_027394, exon 10 of 10)	4693	NM_001012974	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
204503	chr7	4777601	4778330	+	0	NA	intron (NR_157345, intron 1 of 16)	AluJr|SINE|Alu	2342	NM_014855	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
67335	chr14	69643321	69643800	+	0	NA	intron (NM_014734, intron 1 of 5)	MamSINE1|SINE|tRNA-RTE	31964	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
237104	chrX	104137401	104137680	+	0	NA	intron (NM_001012755, intron 1 of 1)	MER101|LTR|ERV1	-12908	NR_039980	286437		NR_039980		LOC286437	-	uncharacterized LOC286437	ncRNA
87752	chr16	75245401	75246050	+	0	NA	intron (NM_001170715, intron 1 of 6)	intron (NM_001170715, intron 1 of 6)	2426	NM_001170719	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
218609	chr8	56067051	56067150	+	0	NA	TTS (NM_001146227)	TTS (NM_001146227)	6801	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
54450	chr12	91872701	91873300	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	268713	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
38256	chr11	36557071	36557600	+	0	NA	intron (NM_001377277, intron 3 of 4)	L1HS|LINE|L1	-10672	NM_000448	5896		NM_000448	ENSG00000166349	RAG1	RAG-1|RNF74	recombination activating 1	protein-coding
142480	chr20	4607321	4607780	+	0	NA	Intergenic	Intergenic	-78906	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
85640	chr16	55733171	55733330	+	0	NA	intron (NR_033740, intron 6 of 13)	MIR|SINE|MIR	8325	NR_033740	390732		NR_033740		CES1P2	-	carboxylesterase 1 pseudogene 2	pseudo
132209	chr2	102138221	102138530	+	0	NA	intron (NM_001320980, intron 1 of 11)	intron (NM_001320980, intron 1 of 11)	-3416	NM_001320981	3554		NM_000877	ENSG00000115594	IL1R1	CD121A|CRMO3|D2S1473|IL-1R-alpha|IL-1RT1|IL1R|IL1RA|P80	interleukin 1 receptor type 1	protein-coding
202207	chr6	156778801	156780000	+	0	NA	promoter-TSS (NR_163974)	promoter-TSS (NR_163974)	331	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
7014	chr1	31910951	31911500	+	0	NA	intron (NM_001369858, intron 3 of 4)	intron (NM_001369858, intron 3 of 4)	26593	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
46439	chr11	128050821	128051750	+	0	NA	Intergenic	Intergenic	-157481	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
180695	chr5	21489301	21489500	+	0	NA	intron (NR_027026, intron 3 of 4)	intron (NR_027026, intron 3 of 4)	29920	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
147308	chr20	57703701	57703900	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	6215	NM_020182	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
186035	chr5	134008421	134008680	+	0	NA	Intergenic	Intergenic	-3575	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
62641	chr13	101515571	101515800	+	0	NA	intron (NM_001271756, intron 1 of 9)	intron (NM_001271756, intron 1 of 9)	25733	NM_001271756	9358		NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
217098	chr8	24444321	24444580	+	0	NA	intron (NM_003817, intron 2 of 21)	L1MC3|LINE|L1	3424	NM_003817	8756		NM_003817	ENSG00000069206	ADAM7	ADAM 7|ADAM-7|EAPI|GP-83|GP83	ADAM metallopeptidase domain 7	protein-coding
95906	chr17	38900521	38902130	+	0	NA	intron (NM_006148, intron 4 of 6)	intron (NM_006148, intron 4 of 6)	-13654	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
207864	chr7	50366321	50366680	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	47452	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
109672	chr19	1024621	1024930	+	0	NA	Intergenic	AluY|SINE|Alu	-1833	NM_201277	1265		NM_004368	ENSG00000064666	CNN2	-	calponin 2	protein-coding
41696	chr11	66639261	66640580	+	0	NA	exon (NM_001198844, exon 2 of 3)	exon (NM_001198844, exon 2 of 3)	1217	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
210884	chr7	101165101	101166150	+	0	NA	promoter-TSS (NM_003378)	promoter-TSS (NM_003378)	-56	NM_003378	7425		NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
98892	chr17	48581271	48581430	+	0	NA	intron (NM_001384749, intron 1 of 4)	intron (NM_001384749, intron 1 of 4)	1029	NM_001330322	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
228933	chr9	113274271	113274800	+	0	NA	intron (NM_139286, intron 1 of 3)	intron (NM_139286, intron 1 of 3)	1037	NM_139286	246184		NM_139286	ENSG00000176386	CDC26	ANAPC12|APC12|C9orf17	cell division cycle 26	protein-coding
89767	chr16	89461851	89462230	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	28521	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
157970	chr22	49819421	49819880	+	0	NA	intron (NM_001349940, intron 1 of 12)	AluSg|SINE|Alu	4681	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
98923	chr17	48614151	48615200	+	0	NA	exon (NM_024016, exon 1 of 2)	exon (NM_024016, exon 1 of 2)	617	NM_024016	3218		NM_024016	ENSG00000120068	HOXB8	HOX2|HOX2D|Hox-2.4	homeobox B8	protein-coding
229223	chr9	114908051	114910130	+	0	NA	intron (NM_001244, intron 2 of 3)	intron (NM_001244, intron 2 of 3)	21501	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
156265	chr22	40415421	40416680	+	0	NA	intron (NM_001282661, intron 13 of 13)	L2a|LINE|L2	45456	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
229347	chr9	120921571	120922300	+	0	NA	intron (NM_005658, intron 3 of 7)	intron (NM_005658, intron 3 of 7)	4861	NM_005658	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
34249	chr10	131042221	131042730	+	0	NA	Intergenic	Intergenic	-52743	NR_120623	101927489		NR_120623	ENSG00000230098	TCERG1L-AS1	-	TCERG1L antisense RNA 1	ncRNA
214313	chr7	149239271	149240480	+	0	NA	intron (NM_012256, intron 1 of 4)	CpG	224	NM_012256	7988		NM_012256	ENSG00000170260	ZNF212	C2H2-150|ZNF182|ZNFC150	zinc finger protein 212	protein-coding
11544	chr1	91014601	91014800	+	0	NA	intron (NM_032186, intron 1 of 3)	intron (NM_032186, intron 1 of 3)	6808	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
35276	chr11	923351	923650	+	0	NA	Intergenic	AluJo|SINE|Alu	-2309	NM_001242837	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
50583	chr12	48352871	48353030	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1704	NM_001172682	121274		NM_152320	ENSG00000167528	ZNF641	-	zinc finger protein 641	protein-coding
172444	chr4	1928301	1929050	+	0	NA	intron (NM_007331, intron 7 of 10)	intron (NM_007331, intron 7 of 10)	28049	NM_133334	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
91720	chr17	6642601	6643000	+	0	NA	TTS (NM_016060)	TTS (NM_016060)	1740	NM_032731	84817		NM_032731	ENSG00000129235	TXNDC17	TRP14|TXNL5	thioredoxin domain containing 17	protein-coding
123617	chr19	54531001	54531400	+	0	NA	Intergenic	Intergenic	-1492	NR_104095	90011		NM_033206	ENSG00000290933	KIR3DX1	KIR3DL0|LENG12	killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)	pseudo
201360	chr6	144672551	144672880	+	0	NA	intron (NM_001375323, intron 1 of 24)	L1PB1|LINE|L1	89567	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
126679	chr2	29920301	29920780	+	0	NA	exon (NM_004304, exon 1 of 29)	exon (NM_004304, exon 1 of 29)	1046	NM_004304	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
35083	chr11	621071	622580	+	0	NA	exon (NM_021924, exon 4 of 15).2	exon (NM_021924, exon 4 of 15).2	3130	NM_001171968	53841		NM_017717	ENSG00000099834	CDHR5	MLPCDH|MU-PCDH|MUCDHL|MUPCDH	cadherin related family member 5	protein-coding
11052	chr1	85005601	85006000	+	0	NA	Intergenic	L1PB1|LINE|L1	-8687	NM_153259	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
130205	chr2	84534171	84534430	+	0	NA	intron (NM_001370, intron 4 of 76)	Charlie17|DNA|hAT-Charlie	17802	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
147971	chr20	62982121	62983400	+	0	NA	Intergenic	Intergenic	24204	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
182699	chr5	68222001	68222200	+	0	NA	intron (NM_181523, intron 1 of 15)	intron (NM_181523, intron 1 of 15)	6344	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
221232	chr8	121724201	121725130	+	0	NA	Intergenic	Intergenic	-83225	NM_005328	3037		NM_005328	ENSG00000170961	HAS2	-	hyaluronan synthase 2	protein-coding
237472	chrX	119782721	119783130	+	0	NA	Intergenic	AluSz|SINE|Alu	4559	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
136342	chr2	175366771	175367030	+	0	NA	Intergenic	Intergenic	-185190	NM_001002258	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
140672	chr2	234027771	234027930	+	0	NA	Intergenic	L2b|LINE|L2	-22852	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
25902	chr10	11285701	11286680	+	0	NA	intron (NM_001326330, intron 8 of 12)	intron (NM_001326330, intron 8 of 12)	58484	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70322	chr14	101831951	101832050	+	0	NA	intron (NM_001352916, intron 2 of 13)	L4_C_Mam|LINE|RTE-X	22137	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
28896	chr10	62852951	62854180	+	0	NA	Intergenic	L1MA9|LINE|L1	-34398	NM_001136178	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
64474	chr14	24270931	24272530	+	0	NA	promoter-TSS (NM_004581).2	promoter-TSS (NM_004581).2	-103	NM_182836	5875		NM_004581	ENSG00000100949	RABGGTA	PTAR3	Rab geranylgeranyltransferase subunit alpha	protein-coding
42494	chr11	70202821	70203500	+	0	NA	promoter-TSS (NM_003824)	promoter-TSS (NM_003824)	-136	NM_003824	8772		NM_003824	ENSG00000168040	FADD	GIG3|IMD90|MORT1	Fas associated via death domain	protein-coding
78736	chr15	98779471	98779920	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	-4731	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
227882	chr9	93945851	93946150	+	0	NA	Intergenic	CpG	9355	NM_021570	56033		NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
49580	chr12	26985421	26986000	+	0	NA	intron (NM_016551, intron 6 of 11)	intron (NM_016551, intron 6 of 11)	28674	NM_016551	51768		NM_016551	ENSG00000064115	TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
90411	chr17	1331571	1332030	+	0	NA	Intergenic	Intergenic	52138	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
123789	chr19	55141251	55142050	+	0	NA	intron (NM_001291774, intron 7 of 13)	AluSq2|SINE|Alu	7556	NM_001291774	7138		NM_003283	ENSG00000105048	TNNT1	ANM|NEM5|STNT|TNT|TNTS	troponin T1, slow skeletal type	protein-coding
25371	chr10	6445851	6447030	+	0	NA	intron (NM_001282644, intron 15 of 17)	AluSx|SINE|Alu	96124	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
21379	chr1	205210521	205212130	+	0	NA	exon (NM_199462, exon 1 of 12)	exon (NM_199462, exon 1 of 12)	377	NM_199462	25778		NM_015375	ENSG00000133059	DSTYK	CAKUT1|DustyPK|HDCMD38P|RHDNS1|RIP5|RIPK5|SPG23	dual serine/threonine and tyrosine protein kinase	protein-coding
112806	chr19	7498121	7498730	+	0	NA	intron (NM_198534, intron 1 of 8)	AluSp|SINE|Alu	877	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
185636	chr5	131528471	131529700	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	106144	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
237565	chrX	120790241	120790780	+	0	NA	Intergenic	Intergenic	85415	NM_001145718	643311		NM_001145718	ENSG00000236446	CT47B1	CT47.13|CT47A13	cancer/testis antigen family 47 member B1	protein-coding
189442	chr5	172978721	172979130	+	0	NA	Intergenic	Intergenic	-4846	NM_003945	8992		NM_003945	ENSG00000113732	ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase H+ transporting V0 subunit e1	protein-coding
52022	chr12	53989151	53989850	+	0	NA	3' UTR (NM_017409, exon 2 of 2)	3' UTR (NM_017409, exon 2 of 2)	-2238	NR_029617	406973		NR_029617	ENSG00000207924	MIR196A2	MIRN196-2|MIRN196A2|mir-196a-2	microRNA 196a-2	ncRNA
218731	chr8	58787471	58788030	+	0	NA	Intergenic	Intergenic	-127897	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
69870	chr14	99277701	99277980	+	0	NA	Intergenic	Intergenic	-5643	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
99534	chr17	50356421	50356680	+	0	NA	non-coding (NR_110010, exon 8 of 10)	non-coding (NR_110010, exon 8 of 10)	10424	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
82462	chr16	16992871	16993500	+	0	NA	Intergenic	Intergenic	-141319	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
145203	chr20	38895371	38895600	+	0	NA	intron (NM_001172735, intron 3 of 9)	intron (NM_001172735, intron 3 of 9)	-30932	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
80681	chr16	3034951	3035330	+	0	NA	intron (NR_047572, intron 3 of 7)	intron (NR_047572, intron 3 of 7)	401	NM_001103175	146439		NM_001103175	ENSG00000162069	BICDL2	BICDR-2|BICDR2|CCDC64B	BICD family like cargo adaptor 2	protein-coding
84355	chr16	30217251	30217550	+	0	NA	Intergenic	Intergenic	-10473	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
166340	chr3	112968621	112968950	+	0	NA	intron (NM_138939, intron 1 of 3)	L1MEb|LINE|L1	6318	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
148288	chr20	63704521	63704780	+	0	NA	intron (NM_003224, intron 4 of 7)	ERV3-16A3_I-int|LTR|ERVL	-2792	NM_001083113	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
171762	chr3	198219871	198220050	+	0	NA	non-coding (NR_146164, exon 18 of 18)	non-coding (NR_146164, exon 18 of 18)	66754	NR_146164	728262		NM_001145248	ENSG00000290937	FAM157A	GTF2IP18	family with sequence similarity 157 member A	ncRNA
166875	chr3	123723601	123723980	+	0	NA	intron (NM_053027, intron 12 of 32)	intron (NM_053027, intron 12 of 32)	34146	NR_046629	100873940		NR_046629	ENSG00000250174	MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
93592	chr17	19128301	19128500	+	0	NA	intron (NM_001129778, intron 1 of 3)	MIR3|SINE|MIR	811	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
193501	chr6	30568001	30569230	+	0	NA	Intergenic	L2a|LINE|L2	-2827	NM_001090	23		NM_001090	ENSG00000204574	ABCF1	ABC27|ABC50	ATP binding cassette subfamily F member 1	protein-coding
76164	chr15	72805321	72805910	+	0	NA	Intergenic	MER5C|DNA|hAT-Charlie	-21857	NM_001365225	83440		NM_031284	ENSG00000159322	ADPGK	2610017G09Rik|ADP-GK	ADP dependent glucokinase	protein-coding
62010	chr13	83881951	83882150	+	0	NA	5' UTR (NM_001281503, exon 1 of 2)	5' UTR (NM_001281503, exon 1 of 2)	343	NM_052910	114798		NM_052910	ENSG00000178235	SLITRK1	LRRC12|TTM	SLIT and NTRK like family member 1	protein-coding
121802	chr19	47913501	47914180	+	0	NA	TTS (NR_024217)	TTS (NR_024217)	789	NR_024217	100170218		NR_024217		SNAR-C2	-	small NF90 (ILF3) associated RNA C2	snRNA
230835	chr9	129078571	129079380	+	0	NA	Intergenic	Intergenic	-2136	NM_020438	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
67213	chr14	68939851	68940350	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	39202	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
104335	chr17	80967051	80967350	+	0	NA	TTS (NM_001163034)	TTS (NM_001163034)	4013	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
215299	chr7	157299651	157300500	+	0	NA	Intergenic	CpG	-36929	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
87625	chr16	74393771	74394130	+	0	NA	Intergenic	Intergenic	13269	NR_135170	105376772		NR_135170		LOC105376772	-	uncharacterized LOC105376772	ncRNA
77017	chr15	78564721	78566380	+	0	NA	promoter-TSS (NM_000745)	promoter-TSS (NM_000745)	30	NM_001307945	1138		NM_000745	ENSG00000169684	CHRNA5	LNCR2	cholinergic receptor nicotinic alpha 5 subunit	protein-coding
141218	chr2	239385551	239385850	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	15320	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
12528	chr1	108557471	108558050	+	0	NA	Intergenic	L2c|LINE|L2	-2340	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
21177	chr1	203792921	203793180	+	0	NA	Intergenic	Intergenic	-2573	NM_001376342	9877		NM_014827	ENSG00000058673	ZC3H11A	ZC3HDC11A	zinc finger CCCH-type containing 11A	protein-coding
183021	chr5	73120271	73120700	+	0	NA	promoter-TSS (NM_001161342)	promoter-TSS (NM_001161342)	-90	NM_173490	134285		NM_173490	ENSG00000157111	TMEM171	PRP2	transmembrane protein 171	protein-coding
66416	chr14	61516971	61517280	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	53069	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
201736	chr6	149895901	149896750	+	0	NA	promoter-TSS (NM_001243328)	promoter-TSS (NM_001243328)	-266	NM_001243328	135250		NM_139165	ENSG00000164520	RAET1E	LETAL|N2DL-4|NKG2DL4|RAET1E2|RL-4|ULBP4|bA350J20.7	retinoic acid early transcript 1E	protein-coding
17719	chr1	158930071	158930900	+	0	NA	Intergenic	MER34A1|LTR|ERV1	-1067	NM_152501	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
232765	chr9	136673401	136674050	+	0	NA	3' UTR (NM_001012727, exon 5 of 5)	3' UTR (NM_001012727, exon 5 of 5)	3123	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
90150	chr17	140921	141280	+	0	NA	Intergenic	Intergenic	3531	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
48361	chr12	9421701	9422100	+	0	NA	intron (NR_033399, intron 18 of 26)	intron (NR_033399, intron 18 of 26)	-14486	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
189711	chr5	176524471	176524630	+	0	NA	Intergenic	AluSz6|SINE|Alu	12852	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
64732	chr14	34538001	34538500	+	0	NA	intron (NM_001318916, intron 1 of 4)	AluSx|SINE|Alu	1451	NM_018453	55837		NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding
237	chr1	899671	899830	+	0	NA	Intergenic	Intergenic	19942	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
235868	chrX	51395601	51396800	+	0	NA	Intergenic	CpG	-10748	NM_203407	340602		NM_203407	ENSG00000187690	EZHIP	CATACOMB|CXorf67|KIP75	EZH inhibitory protein	protein-coding
172050	chr4	1015771	1016130	+	0	NA	intron (NM_001370296, intron 2 of 6)	intron (NM_001370296, intron 2 of 6)	3486	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
32698	chr10	103990201	103990480	+	0	NA	intron (NM_014720, intron 1 of 18)	L1MC1|LINE|L1	23200	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
27794	chr10	35549421	35549850	+	0	NA	intron (NM_001282852, intron 6 of 8)	intron (NM_001282852, intron 6 of 8)	-55706	NM_153368	219770		NM_153368	ENSG00000177291	GJD4	CX40.1	gap junction protein delta 4	protein-coding
23596	chr1	229866451	229866750	+	0	NA	Intergenic	LTR12C|LTR|ERV1	19218	NR_146476	101927504		NR_146473	ENSG00000227043	LINC01682	-	long intergenic non-protein coding RNA 1682	ncRNA
229841	chr9	125829651	125830480	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	81882	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
35756	chr11	2145101	2145300	+	0	NA	intron (NR_133657, intron 1 of 2)	intron (NR_133657, intron 1 of 2)	-4257	NM_001291862	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
154618	chr22	36307821	36308280	+	0	NA	intron (NM_002473, intron 15 of 40)	intron (NM_002473, intron 15 of 40)	-21143	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
114698	chr19	13134721	13135180	+	0	NA	intron (NM_052876, intron 1 of 5)	intron (NM_052876, intron 1 of 5)	15425	NM_003765	8677		NM_003765	ENSG00000104915	STX10	SYN10|hsyn10	syntaxin 10	protein-coding
196922	chr6	52392821	52393300	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	-27282	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
184947	chr5	113020371	113021500	+	0	NA	non-coding (NR_038352, exon 9 of 9)	non-coding (NR_038352, exon 9 of 9)	44137	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
33362	chr10	117217471	117217880	+	0	NA	Intergenic	Intergenic	20186	NM_181840	338567		NM_181840	ENSG00000186795	KCNK18	K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK	potassium two pore domain channel subfamily K member 18	protein-coding
77834	chr15	88643551	88643650	+	0	NA	intron (NM_001303237, intron 2 of 3)	AluSx1|SINE|Alu	4584	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
93261	chr17	18023051	18023150	+	0	NA	intron (NM_145691, intron 5 of 7)	AluY|SINE|Alu	16068	NM_145691	91647		NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|LP3663|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
43737	chr11	86064171	86064650	+	0	NA	intron (NM_001206947, intron 1 of 18)	AluJo|SINE|Alu	4674	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
99115	chr17	49214771	49215200	+	0	NA	intron (NM_001135186, intron 1 of 7)	L2a|LINE|L2	4278	NM_016428	51225		NM_016428	ENSG00000108798	ABI3	NESH|SSH3BP3	ABI family member 3	protein-coding
102468	chr17	75724321	75725000	+	0	NA	promoter-TSS (NM_001005619)	promoter-TSS (NM_001005619)	-36	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
138636	chr2	210199251	210199780	+	0	NA	intron (NM_001608, intron 8 of 10)	intron (NM_001608, intron 8 of 10)	25932	NM_001608	33		NM_001608	ENSG00000115361	ACADL	ACAD4|LCAD	acyl-CoA dehydrogenase long chain	protein-coding
146136	chr20	48641951	48642250	+	0	NA	intron (NM_020820, intron 29 of 39)	intron (NM_020820, intron 29 of 39)	185899	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
16511	chr1	154924521	154924780	+	0	NA	TTS (NM_001323011)	TTS (NM_001323011)	12069	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
155083	chr22	37562851	37563150	+	0	NA	intron (NM_152243, intron 1 of 2)	AluJr|SINE|Alu	2520	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
154485	chr22	35645751	35646250	+	0	NA	Intergenic	Intergenic	-2446	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
238130	chrX	136690921	136691880	+	0	NA	intron (NM_004840, intron 9 of 21)	intron (NM_004840, intron 9 of 21)	43242	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
92577	chr17	9231771	9232230	+	0	NA	intron (NM_004822, intron 6 of 6)	intron (NM_004822, intron 6 of 6)	-52882	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
158008	chr22	49881271	49881630	+	0	NA	intron (NM_014838, intron 1 of 1)	AluJr|SINE|Alu	27606	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
110300	chr19	1836351	1836600	+	0	NA	intron (NM_020695, intron 1 of 15)	AluSx1|SINE|Alu	12008	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
20227	chr1	193178551	193178650	+	0	NA	TTS (NM_003783)	TTS (NM_003783)	8013	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
51558	chr12	52564751	52565050	+	0	NA	TTS (NM_175053)	TTS (NM_175053)	8943	NM_175053	121391		NM_175053	ENSG00000170484	KRT74	ADWH|ECTD7|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4	keratin 74	protein-coding
212236	chr7	121360621	121360950	+	0	NA	intron (NM_001040020, intron 7 of 9)	AluJr4|SINE|Alu	31785	NM_057168	51384		NM_016087	ENSG00000002745	WNT16	-	Wnt family member 16	protein-coding
103151	chr17	77415901	77416580	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	11163	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
200534	chr6	136252621	136253180	+	0	NA	Intergenic	Intergenic	-2589	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
187481	chr5	142150621	142150880	+	0	NA	intron (NM_030571, intron 7 of 7)	intron (NM_030571, intron 7 of 7)	41971	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
114666	chr19	13063471	13063630	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	38771	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
70092	chr14	100192421	100194100	+	0	NA	Intergenic	CpG	-33615	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
54111	chr12	76144201	76144430	+	0	NA	Intergenic	Intergenic	-59630	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
214160	chr7	144738771	144739080	+	0	NA	promoter-TSS (NM_001350884)	promoter-TSS (NM_001350884)	-27	NM_001350884	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
235896	chrX	52936501	52937150	+	0	NA	Intergenic	Intergenic	19930	NM_001099684	727866		NM_001099684	ENSG00000179304	FAM156B	TMEM29B	family with sequence similarity 156 member B	protein-coding
117619	chr19	23269901	23270630	+	0	NA	non-coding (NR_103741, exon 2 of 5)	non-coding (NR_103741, exon 2 of 5)	3986	NR_103742	100132815		NR_103741		IPO5P1	-	importin 5 pseudogene 1	pseudo
157699	chr22	46369901	46370500	+	0	NA	intron (NM_001378328, intron 25 of 34)	intron (NM_001378328, intron 25 of 34)	34486	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
74781	chr15	63268601	63268880	+	0	NA	TTS (NM_016530)	TTS (NM_016530)	-8810	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
208183	chr7	64888001	64888450	+	0	NA	intron (NM_001385649, intron 1 of 5)	intron (NM_001385649, intron 1 of 5)	5712	NM_001385645	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
131184	chr2	94857201	94857880	+	0	NA	promoter-TSS (NR_003366)	promoter-TSS (NR_003366)	-465	NR_003366	729171		NR_003366	ENSG00000229089	ANKRD20A8P	ANKRD20B	ankyrin repeat domain 20 family member A8, pseudogene	pseudo
19141	chr1	171547621	171548280	+	0	NA	intron (NM_015172, intron 17 of 33)	AluSz|SINE|Alu	62420	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
205108	chr7	6847051	6847350	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-20925	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
88163	chr16	81701451	81702000	+	0	NA	exon (NM_198390, exon 16 of 21)	exon (NM_198390, exon 16 of 21)	36371	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
61747	chr13	74234051	74234430	+	0	NA	intron (NR_144451, intron 1 of 1)	intron (NR_144451, intron 1 of 1)	2796	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
96545	chr17	40362401	40363700	+	0	NA	exon (NM_152219, exon 1 of 1)	exon (NM_152219, exon 1 of 1)	1687	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
54818	chr12	94706301	94706500	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-55843	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
53668	chr12	68420251	68421150	+	0	NA	Intergenic	MamGypsy2-LTR|LTR|Gypsy	30784	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
100510	chr17	62062921	62063330	+	0	NA	exon (NM_005121, exon 2 of 30)	exon (NM_005121, exon 2 of 30)	2153	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
126990	chr2	36770701	36770980	+	0	NA	intron (NM_053276, intron 7 of 15)	intron (NM_053276, intron 7 of 15)	74133	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
38776	chr11	47179151	47180150	+	0	NA	promoter-TSS (NR_106803)	promoter-TSS (NR_106803)	87	NR_106803	102466726		NR_106803	ENSG00000275208	MIR6745	hsa-mir-6745	microRNA 6745	ncRNA
210011	chr7	93148321	93148880	+	0	NA	promoter-TSS (NM_001303500)	promoter-TSS (NM_001303500)	-215	NM_001303498	219285		NM_152703	ENSG00000177409	SAMD9L	ATXPC|C7DELq|C7orf6|DEL7q|DRIF2|M7MLS1|MLSM7|SCA49|UEF1	sterile alpha motif domain containing 9 like	protein-coding
102496	chr17	75757971	75758730	+	0	NA	TTS (NM_001005731)	TTS (NM_001005731)	6842	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
19848	chr1	182892871	182893230	+	0	NA	Intergenic	AluSp|SINE|Alu	-53459	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
163530	chr3	51540571	51541080	+	0	NA	promoter-TSS (NM_001322257)	promoter-TSS (NM_001322257)	-764	NM_001322257	23132		NM_015106	ENSG00000164080	RAD54L2	ARIP4|HSPC325|SRISNF2L	RAD54 like 2	protein-coding
149767	chr21	34802501	34802700	+	0	NA	intron (NM_001754, intron 7 of 8)	intron (NM_001754, intron 7 of 8)	56775	NR_038886	100506385		NR_038885	ENSG00000234380	LINC01426	lincRNA-uc002yug.2	long intergenic non-protein coding RNA 1426	ncRNA
138114	chr2	202284121	202284380	+	0	NA	intron (NM_015934, intron 4 of 14)	AluSz|SINE|Alu	6137	NR_145774	109616995		NR_145774	ENSG00000212309	SNORD70B	-	small nucleolar RNA, C/D box 70B	snoRNA
159497	chr3	14232751	14233030	+	0	NA	Intergenic	Intergenic	54073	NM_014463	27258		NM_014463	ENSG00000170860	LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
119417	chr19	40277351	40278080	+	0	NA	intron (NM_001243027, intron 1 of 13)	intron (NM_001243027, intron 1 of 13)	4926	NR_030371	693226		NR_030371	ENSG00000207631	MIR641	MIRN641|hsa-mir-641|mir-641	microRNA 641	ncRNA
52392	chr12	55727571	55727730	+	0	NA	5' UTR (NM_001257401, exon 1 of 7)	5' UTR (NM_001257401, exon 1 of 7)	138	NM_001257401	967		NM_001780	ENSG00000135404	CD63	AD1|HOP-26|ME491|MLA1|OMA81H|Pltgp40|TSPAN30	CD63 molecule	protein-coding
146614	chr20	50153151	50155180	+	0	NA	promoter-TSS (NR_027889)	promoter-TSS (NR_027889)	-367	NR_027889	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
201113	chr6	142864071	142864230	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	81026	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
196044	chr6	42048151	42049500	+	0	NA	promoter-TSS (NM_001136017)	promoter-TSS (NM_001136017)	69	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
22531	chr1	222129071	222129430	+	0	NA	Intergenic	L1MA8|LINE|L1	-150730	NR_149057	105372950		NR_149057	ENSG00000238042	LINC02257	-	long intergenic non-protein coding RNA 2257	ncRNA
87272	chr16	70010071	70010230	+	0	NA	intron (NR_003610, intron 16 of 25)	AluJb|SINE|Alu	-20196	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
124443	chr19	58502751	58502850	+	0	NA	intron (NM_001321196, intron 3 of 9)	intron (NM_001321196, intron 3 of 9)	9192	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
125045	chr2	9609621	9610100	+	0	NA	intron (NM_006826, intron 2 of 5)	L1MEd|LINE|L1	21137	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
198728	chr6	108262771	108263100	+	0	NA	Intergenic	Intergenic	-1895	NM_001300929	8724		NM_003795	ENSG00000112335	SNX3	Grd19|MCOPS8|SDP3	sorting nexin 3	protein-coding
182970	chr5	71464501	71464700	+	0	NA	intron (NM_018429, intron 4 of 38).3	AluJb|SINE|Alu	8949	NM_018429	55814		NM_018429	ENSG00000145734	BDP1	DFNB112|HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
155389	chr22	38315301	38316300	+	0	NA	intron (NM_001289912, intron 5 of 14)	intron (NM_001289912, intron 5 of 14)	1633	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
74992	chr15	63933471	63933630	+	0	NA	intron (NR_120344, intron 3 of 3)	MER5C1|DNA|hAT-Charlie	5276	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
159836	chr3	16498301	16498700	+	0	NA	intron (NM_015150, intron 1 of 9)	MER57C2|LTR|ERV1	15199	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
74823	chr15	63485601	63486050	+	0	NA	Intergenic	AluSq2|SINE|Alu	-18686	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
227750	chr9	93093401	93093800	+	0	NA	Intergenic	Intergenic	-2617	NM_032310	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
53377	chr12	64679081	64680380	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-57125	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
209090	chr7	74854221	74854480	+	0	NA	Intergenic	AluSz|SINE|Alu	-2774	NM_173537	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
119591	chr19	40721451	40721750	+	0	NA	intron (NM_025194, intron 1 of 6)	AluSx|SINE|Alu	4488	NM_025194	80271		NM_025194	ENSG00000086544	ITPKC	IP3-3KC|IP3KC	inositol-trisphosphate 3-kinase C	protein-coding
159511	chr3	14404621	14405430	+	0	NA	intron (NR_103507, intron 1 of 13)	intron (NR_103507, intron 1 of 13)	2419	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
126646	chr2	28896871	28897500	+	0	NA	intron (NM_015131, intron 1 of 17)	Charlie16a|DNA|hAT-Charlie	2518	NM_015131	23160		NM_015131	ENSG00000163811	WDR43	NET12|UTP5	WD repeat domain 43	protein-coding
91838	chr17	7202121	7202380	+	0	NA	intron (NR_135527, intron 10 of 20)	AluJr|SINE|Alu	2937	NM_001321077	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
102837	chr17	76469971	76470730	+	0	NA	TTS (NM_001166579)	TTS (NM_001166579)	2747	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
232839	chr9	136761971	136762330	+	0	NA	intron (NM_203347, intron 5 of 6)	intron (NM_203347, intron 5 of 6)	2368	NM_203347	389812		NM_203347	ENSG00000177984	LCN15	PRO6093|UNQ2541	lipocalin 15	protein-coding
36340	chr11	3896771	3897130	+	0	NA	intron (NM_001382571, intron 1 of 9)	MIR|SINE|MIR	40888	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
226140	chr9	63433921	63434380	+	0	NA	Intergenic	Intergenic	99612	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
133655	chr2	127053901	127054730	+	0	NA	intron (NM_139344, intron 11 of 17)	intron (NM_139344, intron 11 of 17)	27750	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
81019	chr16	4252951	4254730	+	0	NA	promoter-TSS (NR_039999)	promoter-TSS (NR_039999)	-51	NR_039999	100507501		NR_039999		LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA
85011	chr16	31507421	31509080	+	0	NA	exon (NM_022744, exon 1 of 13)	exon (NM_022744, exon 1 of 13)	141	NM_022744	64755		NM_022744	ENSG00000140688	RUSF1	C16orf58|RUS	RUS family member 1	protein-coding
75236	chr15	64877571	64877880	+	0	NA	Intergenic	Intergenic	-34177	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
146713	chr20	50586821	50587080	+	0	NA	non-coding (NR_110890, exon 22 of 22)	non-coding (NR_110890, exon 22 of 22)	1164	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
13905	chr1	119808951	119809280	+	0	NA	5' UTR (NM_001159352, exon 2 of 7)	5' UTR (NM_001159352, exon 2 of 7)	2345	NM_032044	83998		NM_032044	ENSG00000134193	REG4	GISP|REG-IV|RELP	regenerating family member 4	protein-coding
149510	chr21	32707401	32707600	+	0	NA	intron (NM_203446, intron 2 of 32)	AluJr4|SINE|Alu	20421	NM_001160306	8867		NM_003895	ENSG00000159082	SYNJ1	DEE53|EIEE53|INPP5G|PARK20	synaptojanin 1	protein-coding
116463	chr19	18088221	18089850	+	0	NA	intron (NM_001290024, intron 1 of 17)	AluSx|SINE|Alu	-2101	NM_153701	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
117787	chr19	29835071	29835230	+	0	NA	Intergenic	L1ME3F|LINE|L1	23159	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
230769	chr9	128909221	128909480	+	0	NA	intron (NM_019594, intron 3 of 3)	intron (NM_019594, intron 3 of 3)	-11632	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
100767	chr17	63987971	63988130	+	0	NA	Intergenic	Intergenic	-10301	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
235437	chrX	45851101	45851950	+	0	NA	promoter-TSS (NR_125365)	promoter-TSS (NR_125365)	-35	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
91131	chr17	3720021	3720480	+	0	NA	intron (NM_002208, intron 29 of 30)	intron (NM_002208, intron 29 of 30)	-3653	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
105439	chr17	82909201	82910200	+	0	NA	intron (NM_005993, intron 22 of 38)	intron (NM_005993, intron 22 of 38)	-69678	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
95139	chr17	35053321	35053680	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	10207	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
133905	chr2	130181201	130183400	+	0	NA	promoter-TSS (NM_017751)	promoter-TSS (NM_017751)	38	NM_025029	80097		NM_025029	ENSG00000152082	MZT2B	FAM128B|MOZART2B	mitotic spindle organizing protein 2B	protein-coding
84406	chr16	30347101	30347500	+	0	NA	Intergenic	Intergenic	7634	NM_001243646	10421		NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
112723	chr19	7207771	7208750	+	0	NA	intron (NM_001079817, intron 2 of 20)	intron (NM_001079817, intron 2 of 20)	86154	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
8281	chr1	39960171	39960980	+	0	NA	intron (NM_032793, intron 3 of 13)	intron (NM_032793, intron 3 of 13)	5430	NM_001349822	84879		NM_032793	ENSG00000168389	MFSD2A	HsMFSD2A|MCPH15|MFSD2|NEDMISBA|NLS1|SLC59A1	MFSD2 lysolipid transporter A, lysophospholipid	protein-coding
115914	chr19	16610021	16610630	+	0	NA	intron (NM_004831, intron 1 of 2)	Charlie17b|DNA|hAT-Charlie	17879	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
155994	chr22	39923801	39924150	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	-2629	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
167795	chr3	133489251	133489980	+	0	NA	intron (NR_135276, intron 1 of 4)	HERVL-int|LTR|ERVL	1531	NR_135277	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
90944	chr17	2626401	2627000	+	0	NA	intron (NM_000430, intron 1 of 10)	AluSg|SINE|Alu	33046	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
102258	chr17	75272581	75273250	+	0	NA	TTS (NM_001126122)	TTS (NM_001126122)	1616	NR_036520	100287042		NR_036520	ENSG00000263843	MIF4GD-DT	-	MIF4GD divergent transcript	ncRNA
89188	chr16	88568851	88568950	+	0	NA	Intergenic	Intergenic	-1503	NM_001294340	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
233368	chr9	137492201	137493000	+	0	NA	intron (NM_001098537, intron 20 of 34)	intron (NM_001098537, intron 20 of 34)	-33266	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228568	chr9	102050451	102050550	+	0	NA	Intergenic	L1ME1|LINE|L1	-311853	NM_133445	116443		NM_133445	ENSG00000198785	GRIN3A	GluN3A|NMDAR-L|NMDAR3A|NR3A	glutamate ionotropic receptor NMDA type subunit 3A	protein-coding
132771	chr2	109814271	109814700	+	0	NA	intron (NM_032260, intron 8 of 19)	AluY|SINE|Alu	19876	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
185276	chr5	126353901	126354280	+	0	NA	Intergenic	Intergenic	-6030	NM_001146319	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
23413	chr1	228280601	228281200	+	0	NA	intron (NM_052843, intron 30 of 80)	intron (NM_052843, intron 30 of 80)	-67236	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
61916	chr13	77729421	77730160	+	0	NA	intron (NM_001242868, intron 2 of 6)	L2b|LINE|L2	-11370	NM_001242871	122060		NM_144595	ENSG00000139737	SLAIN1	C13orf32	SLAIN motif family member 1	protein-coding
539	chr1	1234901	1236430	+	0	NA	TTS (NM_080605)	TTS (NM_080605)	3428	NM_080605	126792		NM_080605	ENSG00000176022	B3GALT6	ALGAZ|EDSP2|EDSSPD2|SEMDJL1|beta3GalT6	beta-1,3-galactosyltransferase 6	protein-coding
184112	chr5	94109071	94109630	+	0	NA	intron (NR_028080, intron 1 of 8)	intron (NR_028080, intron 1 of 8)	2313	NM_032042	83989		NM_032042	ENSG00000113391	ARB2A	C5orf21|FAM172A|Toupee	ARB2 cotranscriptional regulator A	protein-coding
208029	chr7	55722801	55723080	+	0	NA	Intergenic	Intergenic	-18373	NR_003949	360132		NM_182827	ENSG00000291029	FKBP9P1	FKBP9L	FKBP prolyl isomerase 9 pseudogene 1	pseudo
138027	chr2	201282971	201283130	+	0	NA	intron (NR_111983, intron 7 of 8)	SVA_E|Retroposon|SVA	22514	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
125611	chr2	18558671	18558830	+	0	NA	intron (NM_001199103, intron 8 of 8)	MER4A|LTR|ERV1	1903	NM_020905	57665		NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14	protein-coding
39449	chr11	60950301	60950500	+	0	NA	intron (NM_016582, intron 1 of 7)	MIR|SINE|MIR	1776	NM_016582	51296		NM_016582	ENSG00000110446	SLC15A3	OCTP|PHT2|PTR3|hPHT2	solute carrier family 15 member 3	protein-coding
172818	chr4	3069771	3069930	+	0	NA	intron (NR_045414, intron 2 of 2)	intron (NR_045414, intron 2 of 2)	4664	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
181935	chr5	54964471	54964630	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	21043	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
89881	chr16	89649871	89650030	+	0	NA	intron (NM_002768, intron 3 of 6)	intron (NM_002768, intron 3 of 6)	7758	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
17291	chr1	156437651	156438200	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-8377	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
41106	chr11	65542551	65542850	+	0	NA	intron (NM_001130144, intron 18 of 27)	intron (NM_001130144, intron 18 of 27)	15528	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
140232	chr2	231766851	231766970	+	0	NA	intron (NM_001291018, intron 1 of 3)	AluSx|SINE|Alu	14372	NM_002601	5147		NM_002601	ENSG00000156973	PDE6D	JBTS22|PDED	phosphodiesterase 6D	protein-coding
24556	chr1	244867921	244868530	+	0	NA	Intergenic	AluSp|SINE|Alu	-3682	NM_031844	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
143164	chr20	24102321	24102600	+	0	NA	Intergenic	Intergenic	-97307	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
210645	chr7	100472771	100473630	+	0	NA	intron (NM_001303043, intron 3 of 4)	intron (NM_001303043, intron 3 of 4)	6014	NM_030935	81628		NM_030935	ENSG00000166925	TSC22D4	SPACDR|THG-1|THG1|TILZ2	TSC22 domain family member 4	protein-coding
178404	chr4	147683521	147684930	+	0	NA	promoter-TSS (NM_001350144)	promoter-TSS (NM_001350144)	5	NM_001350143	90826		NM_138364	ENSG00000164169	PRMT9	PRMT10	protein arginine methyltransferase 9	protein-coding
42502	chr11	70267401	70267600	+	0	NA	Intergenic	AluJb|SINE|Alu	-3190	NM_001378006	8500		NM_003626	ENSG00000131626	PPFIA1	LIP.1|LIP1|LIPRIN	PTPRF interacting protein alpha 1	protein-coding
175715	chr4	77203521	77203920	+	0	NA	Intergenic	Intergenic	46513	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
101223	chr17	65711771	65711930	+	0	NA	intron (NR_126542, intron 2 of 5)	intron (NR_126542, intron 2 of 5)	114601	NM_001037325	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
60409	chr13	40970601	40970800	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	11582	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
118846	chr19	38636851	38638150	+	0	NA	TTS (NM_001308393).2	TTS (NM_001308393).2	-10149	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
238224	chrX	140091171	140091550	+	0	NA	promoter-TSS (NM_001271560)	promoter-TSS (NM_001271560)	-307	NM_001271560	389895		NM_001271560	ENSG00000230707	HAPSTR2	-	HUWE1 associated protein modifying stress responses 2	protein-coding
221672	chr8	126156401	126156600	+	0	NA	Intergenic	Intergenic	-168995	NR_125421	101927657		NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
83360	chr16	25066711	25067950	+	0	NA	non-coding (NR_135196, exon 1 of 2)	non-coding (NR_135196, exon 1 of 2)	443	NR_135197	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
87646	chr16	74566771	74567930	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	39764	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
111758	chr19	4375421	4376530	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	24572	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
94044	chr17	27322701	27323300	+	0	NA	Intergenic	AluJr|SINE|Alu	28886	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
51847	chr12	53466451	53466550	+	0	NA	intron (NM_031989, intron 10 of 14)	intron (NM_031989, intron 10 of 14)	2032	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
126239	chr2	27068601	27069830	+	0	NA	intron (NR_104246, intron 14 of 15)	intron (NR_104246, intron 14 of 15)	2439	NM_001134693	100128731		NM_001134693	ENSG00000228474	OST4	-	oligosaccharyltransferase complex subunit 4, non-catalytic	protein-coding
112624	chr19	6769421	6770050	+	0	NA	Intergenic	AluSp|SINE|Alu	-2300	NM_005490	10045		NM_005490	ENSG00000125731	SH2D3A	NSP1	SH2 domain containing 3A	protein-coding
170193	chr3	183827451	183828380	+	0	NA	Intergenic	Intergenic	-2338	NM_024871	79929		NM_024871	ENSG00000180834	MAP6D1	MAPO6D1|SL21	MAP6 domain containing 1	protein-coding
231349	chr9	130327101	130327400	+	0	NA	intron (NM_001291815, intron 21 of 97)	intron (NM_001291815, intron 21 of 97)	61490	NM_001291815	256158		NM_144655	ENSG00000148357	HMCN2	-	hemicentin 2	protein-coding
64718	chr14	34324171	34324730	+	0	NA	Intergenic	Intergenic	137790	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
101347	chr17	67081871	67082430	+	0	NA	intron (NM_001330447, intron 32 of 32)	intron (NM_001330447, intron 32 of 32)	37596	NM_000727	786		NM_000727	ENSG00000108878	CACNG1	CACNLG	calcium voltage-gated channel auxiliary subunit gamma 1	protein-coding
57994	chr12	124325401	124325800	+	0	NA	intron (NM_001077261, intron 47 of 47)	intron (NM_001077261, intron 47 of 47)	11642	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
129360	chr2	68776171	68776550	+	0	NA	intron (NM_001364820, intron 2 of 9)	L2a|LINE|L2	1450	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
17562	chr1	156812221	156812850	+	0	NA	intron (NM_001161444, intron 5 of 7)	L2a|LINE|L2	-3215	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
8612	chr1	41641371	41641730	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-156867	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
69274	chr14	93065051	93065350	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	-2252	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
109232	chr19	499621	500300	+	0	NA	intron (NM_130762, intron 3 of 3)	intron (NM_130762, intron 3 of 3)	3474	NM_130760	8174		NM_130760	ENSG00000099866	MADCAM1	MACAM1	mucosal vascular addressin cell adhesion molecule 1	protein-coding
83395	chr16	27154801	27155680	+	0	NA	Intergenic	Intergenic	-48286	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
89723	chr16	89421501	89421900	+	0	NA	intron (NR_045839, intron 1 of 9)	CpG	-9218	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
15354	chr1	150010201	150011450	+	0	NA	promoter-TSS (NM_020205)	promoter-TSS (NM_020205)	-99	NM_020205	56957		NM_020205	ENSG00000264522	OTUD7B	CEZANNE|ZA20D1	OTU deubiquitinase 7B	protein-coding
66593	chr14	63525871	63526030	+	0	NA	intron (NM_006246, intron 2 of 13)	AluSx1|SINE|Alu	-16834	NR_158218	112268140		NR_158218		LOC112268140	-	loricrin-like	ncRNA
98967	chr17	48715971	48716330	+	0	NA	Intergenic	Intergenic	6368	NM_032391	84366		NM_032391	ENSG00000159182	PRAC1	C17orf92|PRAC	PRAC1 small nuclear protein	protein-coding
122921	chr19	50658901	50659730	+	0	NA	TTS (NM_001195076)	TTS (NM_001195076)	9870	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
169698	chr3	172067071	172067630	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	26819	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
108922	chr18	79446771	79447130	+	0	NA	intron (NM_172389, intron 3 of 9)	CpG	46651	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
94552	chr17	29595571	29595730	+	0	NA	intron (NM_152345, intron 1 of 14)	intron (NM_152345, intron 1 of 14)	2518	NM_152345	124930		NM_152345	ENSG00000198720	ANKRD13B	-	ankyrin repeat domain 13B	protein-coding
227291	chr9	89404951	89405380	+	0	NA	intron (NM_001371200, intron 5 of 20)	intron (NM_001371200, intron 5 of 20)	74725	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
231043	chr9	129621151	129621250	+	0	NA	promoter-TSS (NM_199350)	promoter-TSS (NM_199350)	-424	NM_199350	375759		NM_199350	ENSG00000179058	C9orf50	-	chromosome 9 open reading frame 50	protein-coding
164417	chr3	58584971	58586100	+	0	NA	intron (NM_001282714, intron 2 of 4)	intron (NM_001282714, intron 2 of 4)	1479	NM_001282713	11170		NM_007177	ENSG00000168309	FAM107A	DRR1|TU3A	family with sequence similarity 107 member A	protein-coding
10648	chr1	70252971	70253330	+	0	NA	TTS (NR_146810)	TTS (NR_146810)	31770	NM_001350613	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
19557	chr1	179036871	179037650	+	0	NA	intron (NM_001324311, intron 1 of 7)	intron (NM_001324311, intron 1 of 7)	11136	NM_001324311	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
106728	chr18	23512351	23513330	+	0	NA	intron (NM_013326, intron 5 of 19)	L1MB2|LINE|L1	9329	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
108044	chr18	59148901	59149100	+	0	NA	intron (NM_033280, intron 1 of 5)	intron (NM_033280, intron 1 of 5)	9116	NM_033280	90701		NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
32073	chr10	101095301	101096400	+	0	NA	intron (NR_130723, intron 2 of 2)	intron (NR_130723, intron 2 of 2)	29467	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
86708	chr16	67545171	67545500	+	0	NA	intron (NM_024519, intron 17 of 21)	intron (NM_024519, intron 17 of 21)	7873	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
143505	chr20	31512601	31512930	+	0	NA	Intergenic	AluJb|SINE|Alu	-1645	NM_178580	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
239078	chrY	7342671	7343030	+	0	NA	intron (NR_028062, intron 4 of 7)	intron (NR_028062, intron 4 of 7)	68878	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
40253	chr11	63681051	63682750	+	0	NA	intron (NR_049750, intron 1 of 5)	CpG	400	NM_201430	10313		NM_006054	ENSG00000133318	RTN3	ASYIP|HAP|NSPL2|NSPLII|RTN3-A1	reticulon 3	protein-coding
116253	chr19	17607671	17608100	+	0	NA	intron (NM_001080421, intron 41 of 41)	AluJo|SINE|Alu	52236	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
18374	chr1	161366551	161366850	+	0	NA	non-coding (NR_103459, exon 7 of 7)	non-coding (NR_103459, exon 7 of 7)	1176	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
4492	chr1	21651471	21652900	+	0	NA	promoter-TSS (NM_001145658)	promoter-TSS (NM_001145658)	-287	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
139910	chr2	230735551	230736280	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	22367	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
26522	chr10	21493401	21493600	+	0	NA	non-coding (NR_160800, exon 2 of 2)	non-coding (NR_160800, exon 2 of 2)	3141	NR_031736	100302129		NR_031736	ENSG00000222071	MIR1915	MIRN1915|hsa-mir-1915	microRNA 1915	ncRNA
88329	chr16	84508421	84509330	+	0	NA	Intergenic	L1MB5|LINE|L1	-4216	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
32286	chr10	102122201	102122400	+	0	NA	Intergenic	MIRb|SINE|MIR	-1932	NM_001321612	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
97900	chr17	45119621	45119880	+	0	NA	intron (NM_133373, intron 4 of 14)	intron (NM_133373, intron 4 of 14)	-5317	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
170342	chr3	184515351	184515450	+	0	NA	Intergenic	L2a|LINE|L2	41518	NR_046593	100874079		NR_046593	ENSG00000230215	LINC01840	EIF2B5-AS1	long intergenic non-protein coding RNA 1840	ncRNA
219492	chr8	73892971	73893550	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	14278	NR_147034	101926947		NR_147034		LINC01617	C8orf23|NCRNA00249|XLOC_006844	long intergenic non-protein coding RNA 1617	ncRNA
176205	chr4	83644751	83645230	+	0	NA	Intergenic	Intergenic	108882	NM_032717	84803		NM_032717	ENSG00000138678	GPAT3	AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1	glycerol-3-phosphate acyltransferase 3	protein-coding
73952	chr15	51734151	51734580	+	0	NA	intron (NM_001143917, intron 1 of 2)	intron (NM_001143917, intron 1 of 2)	2697	NM_001363969	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
169666	chr3	171582051	171582150	+	0	NA	Intergenic	LTR7Y|LTR|ERV1	-121692	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
48616	chr12	10368351	10369000	+	0	NA	intron (NR_120430, intron 1 of 3)	intron (NR_120430, intron 1 of 3)	4906	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
91812	chr17	7048901	7049350	+	0	NA	Intergenic	L2b|LINE|L2	-5033	NM_001370549	162515		NM_153357	ENSG00000174326	SLC16A11	MCT 11|MCT11	solute carrier family 16 member 11	protein-coding
50215	chr12	46217771	46218530	+	0	NA	intron (NM_001278387, intron 6 of 17)	intron (NM_001278387, intron 6 of 17)	48366	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
37270	chr11	14672051	14672150	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	28296	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
15633	chr1	150652271	150652630	+	0	NA	intron (NM_018178, intron 4 of 4)	L1M4b|LINE|L1	-22828	NM_207168	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
54832	chr12	94942801	94943000	+	0	NA	Intergenic	MIRb|SINE|MIR	60797	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
187048	chr5	139903801	139904700	+	0	NA	intron (NM_013981, intron 1 of 9)	CpG	108442	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
194480	chr6	33215871	33216530	+	0	NA	Intergenic	Intergenic	7700	NM_002931	6015		NM_002931	ENSG00000204227	RING1	RING1A|RNF1	ring finger protein 1	protein-coding
228596	chr9	104990651	104991400	+	0	NA	Intergenic	Intergenic	-62870	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
233396	chr9	137554371	137554930	+	0	NA	3' UTR (NM_001346376, exon 10 of 10)	3' UTR (NM_001346376, exon 10 of 10)	2771	NM_032477	64975		NM_032477	ENSG00000182154	MRPL41	BMRP|MRP-L27|MRPL27|PIG3|RPML27|mL41	mitochondrial ribosomal protein L41	protein-coding
215930	chr8	8299351	8299900	+	0	NA	Intergenic	L1ME1|LINE|L1	71055	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
137820	chr2	200405901	200406100	+	0	NA	intron (NM_001282744, intron 3 of 12)	intron (NM_001282744, intron 3 of 12)	97050	NM_001282744	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
96526	chr17	40346551	40347300	+	0	NA	intron (NM_001024809, intron 1 of 7)	intron (NM_001024809, intron 1 of 7)	-3789	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
178172	chr4	142374871	142375500	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	27948	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
236425	chrX	71299901	71300730	+	0	NA	3' UTR (NM_007363, exon 12 of 12)	3' UTR (NM_007363, exon 12 of 12)	-1435	NM_012278	26548		NM_012278	ENSG00000147166	ITGB1BP2	CHORDC3|ITGB1BP|MELUSIN|MSTP015	integrin subunit beta 1 binding protein 2	protein-coding
86342	chr16	66481271	66481430	+	0	NA	3' UTR (NM_001136106, exon 4 of 4)	3' UTR (NM_001136106, exon 4 of 4)	-4948	NR_109960	101927726		NR_109960	ENSG00000261656	BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
28549	chr10	50603171	50603430	+	0	NA	intron (NM_147156, intron 1 of 10)	MIRb|SINE|MIR	20656	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
59250	chr13	23966421	23967380	+	0	NA	Intergenic	MER65-int|LTR|ERV1	-12902	NM_001286792	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
2931	chr1	11748601	11749730	+	0	NA	intron (NM_001040197, intron 5 of 5)	intron (NM_001040197, intron 5 of 5)	-13028	NM_001010881	284498		NM_001010881	ENSG00000215910	C1orf167	-	chromosome 1 open reading frame 167	protein-coding
155129	chr22	37639201	37639990	+	0	NA	promoter-TSS (NM_001350055)	promoter-TSS (NM_001350055)	-74	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
4002	chr1	18922071	18922700	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	-19586	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
164591	chr3	66198221	66198830	+	0	NA	intron (NM_173471, intron 1 of 10)	(CCTGAC)n|Simple_repeat|Simple_repeat	-22217	NM_001350993	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
22381	chr1	218345801	218346230	+	0	NA	promoter-TSS (NR_046268)	promoter-TSS (NR_046268)	-337	NR_046268	728463		NR_046268		TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
223918	chr9	502901	503100	+	0	NA	intron (NM_001256876, intron 3 of 15)	AluJb|SINE|Alu	-1555	NM_001256877	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
58202	chr12	126766871	126767030	+	0	NA	intron (NR_033878, intron 1 of 4)	LTR28|LTR|ERV1	5312	NR_033878	387895		NR_033878		LINC00944	DMDRMR	long intergenic non-protein coding RNA 944	ncRNA
153889	chr22	30288901	30291250	+	0	NA	promoter-TSS (NM_001037666)	promoter-TSS (NM_001037666)	-570	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
123070	chr19	51372141	51374130	+	0	NA	promoter-TSS (NM_001363693)	promoter-TSS (NM_001363693)	-481	NM_005601	4818		NM_005601	ENSG00000105374	NKG7	GIG1|GMP-17|p15-TIA-1	natural killer cell granule protein 7	protein-coding
138249	chr2	203227851	203227950	+	0	NA	Intergenic	(CCCACC)n|Simple_repeat|Simple_repeat	-11118	NR_163981	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
208247	chr7	65553521	65553900	+	0	NA	intron (NR_157838, intron 1 of 5)	AluJr|SINE|Alu	1355	NR_157837	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
208323	chr7	66148101	66149480	+	0	NA	intron (NM_001142414, intron 4 of 4)	intron (NM_001142414, intron 4 of 4)	33943	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
131324	chr2	96132451	96132750	+	0	NA	exon (NM_001002036, exon 6 of 9)	exon (NM_001002036, exon 6 of 9)	5836	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
18	chr1	31671	32030	+	0	NA	Intergenic	Intergenic	1484	NR_036051	100302278		NR_036051	ENSG00000284332	MIR1302-2	MIRN1302-2|hsa-mir-1302-2	microRNA 1302-2	ncRNA
21816	chr1	207323501	207323700	+	0	NA	intron (NM_001300904, intron 2 of 10)	intron (NM_001300904, intron 2 of 10)	1922	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
212649	chr7	129502051	129503800	+	0	NA	intron (NM_001195243, intron 1 of 1)	CpG	394	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
239162	chrY	11723051	11723230	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	698450	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
200740	chr6	137762071	137762830	+	0	NA	Intergenic	Intergenic	-23413	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
59770	chr13	30150071	30150450	+	0	NA	Intergenic	Intergenic	2814	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
67585	chr14	71701921	71702180	+	0	NA	intron (NM_001354286, intron 15 of 24)	intron (NM_001354286, intron 15 of 24)	115752	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
214997	chr7	152336811	152337680	+	0	NA	intron (NM_170606, intron 2 of 58)	AluJb|SINE|Alu	98758	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
191944	chr6	15962151	15962500	+	0	NA	Intergenic	Intergenic	-166761	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
160599	chr3	31230401	31231230	+	0	NA	Intergenic	LTR33|LTR|ERVL	-69028	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
177430	chr4	112517971	112518680	+	0	NA	intron (NR_161159, intron 1 of 3)	intron (NR_161159, intron 1 of 3)	-2145	NM_024019	63973		NM_024019	ENSG00000178403	NEUROG2	Atoh4|Math4A|NGN2|bHLHa8|ngn-2	neurogenin 2	protein-coding
199339	chr6	113970501	113972080	+	0	NA	promoter-TSS (NR_033441)	promoter-TSS (NR_033441)	-142	NR_033441	3066		NM_001527	ENSG00000196591	HDAC2	HD2|KDAC2|RPD3|YAF1	histone deacetylase 2	protein-coding
121090	chr19	45900651	45900750	+	0	NA	intron (NM_001012643, intron 2 of 2)	MIRb|SINE|MIR	1913	NM_001012643	339344		NM_001012643	ENSG00000176182	MYPOP	P42pop	Myb related transcription factor, partner of profilin	protein-coding
53490	chr12	66279251	66279780	+	0	NA	Intergenic	MER53|DNA|hAT	-22978	NM_001370285	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
3272	chr1	15218621	15219000	+	0	NA	intron (NM_001319665, intron 3 of 3)	MER66C|LTR|ERV1	-28415	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
60521	chr13	41398301	41399080	+	0	NA	Intergenic	Intergenic	-43874	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
231376	chr9	130688071	130688630	+	0	NA	Intergenic	MER74A|LTR|ERVL	-5410	NM_001282709	23404		NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|SHRF|hRrp4p|p7	exosome component 2	protein-coding
169912	chr3	177681871	177682430	+	0	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-134715	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
126167	chr2	26363271	26363850	+	0	NA	intron (NR_137633, intron 1 of 9)	intron (NR_137633, intron 1 of 9)	-16771	NM_153835	165082		NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding
197975	chr6	90025801	90026100	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	131481	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
151702	chr22	17303721	17304850	+	0	NA	Intergenic	Intergenic	-37552	NR_038398	27442		NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3	ncRNA
47875	chr12	6685601	6685950	+	0	NA	intron (NM_001039920, intron 2 of 8)	AluSx|SINE|Alu	3600	NM_133476	171017		NM_133476	ENSG00000126746	ZNF384	CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1	zinc finger protein 384	protein-coding
196260	chr6	42925421	42925980	+	0	NA	3' UTR (NM_001243170, exon 3 of 3)	3' UTR (NM_001243170, exon 3 of 3)	-2302	NR_134881	10695		NM_006586	ENSG00000137161	CNPY3	CAG4A|DEE60|EIEE60|ERDA5|PRAT4A|TNRC5	canopy FGF signaling regulator 3	protein-coding
169283	chr3	158106471	158107400	+	0	NA	promoter-TSS (NM_006884)	promoter-TSS (NM_006884)	-515	NM_001163678	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
134775	chr2	147449401	147450280	+	0	NA	Intergenic	Intergenic	-394677	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
120388	chr19	43672001	43672630	+	0	NA	Intergenic	L2a|LINE|L2	-1969	NM_001005376	5329		NM_002659	ENSG00000011422	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
53465	chr12	65918001	65918250	+	0	NA	intron (NM_003483, intron 3 of 4)	intron (NM_003483, intron 3 of 4)	-35800	NR_158985	100129940		NR_120478	ENSG00000197301	HMGA2-AS1	-	HMGA2 antisense RNA 1	ncRNA
118879	chr19	38674801	38675000	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	27251	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
74867	chr15	63557101	63557480	+	0	NA	intron (NR_046342, intron 6 of 15)	AluSx|SINE|Alu	-40097	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
73617	chr15	44570151	44570450	+	0	NA	intron (NM_025137, intron 34 of 39)	intron (NM_025137, intron 34 of 39)	33153	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
44566	chr11	108225071	108225730	+	0	NA	intron (NM_001351834, intron 2 of 63)	L3|LINE|CR1	1871	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
83025	chr16	22302771	22304030	+	0	NA	intron (NM_001258034, intron 2 of 19).2	L2a|LINE|L2	5991	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
89206	chr16	88612651	88613250	+	0	NA	intron (NM_144604, intron 8 of 17)	AluJb|SINE|Alu	-25622	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
41939	chr11	67304921	67305730	+	0	NA	intron (NM_017857, intron 3 of 13)	AluY|SINE|Alu	1795	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
45931	chr11	121059671	121060030	+	0	NA	intron (NM_001378761, intron 6 of 29)	intron (NM_001378761, intron 6 of 29)	35748	NM_001378761	116804918		NM_001378761		TBCEL-TECTA	-	TBCEL-TECTA readthrough	protein-coding
178068	chr4	140070271	140070980	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-57390	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
40773	chr11	64868951	64869400	+	0	NA	intron (NM_001282444, intron 4 of 6)	intron (NM_001282444, intron 4 of 6)	9434	NR_162101	113218486		NR_162101		MIR10392	-	microRNA 10392	ncRNA
124925	chr2	8541021	8541700	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	42432	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
95587	chr17	37220571	37220730	+	0	NA	intron (NM_198836, intron 29 of 55).2	intron (NM_198836, intron 29 of 55).2	-24151	NR_132772	106635523		NR_132772		SNORA90	-	small nucleolar RNA, H/ACA box 90	snoRNA
23849	chr1	234726421	234726680	+	0	NA	intron (NR_038856, intron 2 of 2)	intron (NR_038856, intron 2 of 2)	2508	NR_038856	100506810		NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
193126	chr6	28988351	28989380	+	0	NA	TTS (NR_135289)	TTS (NR_135289)	3017	NR_145490	414761		NR_135289		HCG15	HCG16	HLA complex group 15	ncRNA
37750	chr11	31820471	31820700	+	0	NA	intron (NR_033971, intron 1 of 2)	intron (NR_033971, intron 1 of 2)	-2624	NM_001368919	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
204478	chr7	4739671	4740280	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	-35648	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
185249	chr5	123460301	123460800	+	0	NA	Intergenic	Intergenic	-36708	NM_001375408	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
39813	chr11	62018921	62019380	+	0	NA	Intergenic	Intergenic	-51516	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
41288	chr11	65862021	65862600	+	0	NA	intron (NR_146598, intron 5 of 15)	intron (NR_146598, intron 5 of 15)	1877	NR_146598	80198		NM_025128	ENSG00000172732	MUS81	SLX3	MUS81 structure-specific endonuclease subunit	protein-coding
88127	chr16	81611551	81611850	+	0	NA	TTS (NR_106759)	TTS (NR_106759)	352	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
158254	chr22	50309301	50309700	+	0	NA	3' UTR (NM_001001794, exon 20 of 20)	3' UTR (NM_001001794, exon 20 of 20)	-1854	NM_001376869	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
167822	chr3	133594251	133594550	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	19966	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
108450	chr18	70195601	70196100	+	0	NA	intron (NM_173630, intron 7 of 48)	intron (NM_173630, intron 7 of 48)	9837	NM_001318520	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
10426	chr1	65812051	65812150	+	0	NA	intron (NM_002600, intron 1 of 16)	intron (NM_002600, intron 1 of 16)	19205	NM_002600	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
195886	chr6	41693621	41693880	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	39860	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
129113	chr2	65163201	65163400	+	0	NA	Intergenic	FRAM|SINE|Alu	-32999	NM_015543	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
9696	chr1	53083221	53083480	+	0	NA	intron (NM_153703, intron 10 of 10)	intron (NM_153703, intron 10 of 10)	21137	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
233431	chr9	137612871	137613030	+	0	NA	exon (NM_152285, exon 2 of 8)	exon (NM_152285, exon 2 of 8)	5579	NR_122036	85026		NM_032937	ENSG00000203993	ARRDC1-AS1	C9orf37	ARRDC1 antisense RNA 1	ncRNA
50654	chr12	48812051	48812980	+	0	NA	Intergenic	Intergenic	-1965	NM_001206917	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
35642	chr11	1841821	1842180	+	0	NA	TTS (NM_001145829)	TTS (NM_001145829)	1793	NM_001145841	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
143932	chr20	32742101	32742700	+	0	NA	intron (NM_053041, intron 1 of 8)	intron (NM_053041, intron 1 of 8)	1067	NM_001099339	149951		NM_053041	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
114147	chr19	11323921	11324550	+	0	NA	3' UTR (NM_004283, exon 5 of 5)	3' UTR (NM_004283, exon 5 of 5)	15422	NM_004283	9545		NM_004283	ENSG00000105514	RAB3D	D2-2|GOV|RAB16|RAD3D	RAB3D, member RAS oncogene family	protein-coding
55348	chr12	104057701	104058100	+	0	NA	intron (NR_169303, intron 1 of 1)	L1M3f|LINE|L1	6537	NM_001384719	83468		NM_031302	ENSG00000120820	GLT8D2	-	glycosyltransferase 8 domain containing 2	protein-coding
178096	chr4	140372851	140374150	+	0	NA	promoter-TSS (NR_033939)	promoter-TSS (NR_033939)	-10	NM_001153663	60592		NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding
212676	chr7	129614221	129614580	+	0	NA	intron (NM_005011, intron 1 of 10)	AluSx|SINE|Alu	2680	NM_001293164	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
101841	chr17	73901901	73902500	+	0	NA	Intergenic	CpG	-73663	NR_027146	283982		NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
49330	chr12	21773371	21773730	+	0	NA	exon (NM_004982, exon 2 of 3)	exon (NM_004982, exon 2 of 3)	1156	NM_004982	3764		NM_004982	ENSG00000121361	KCNJ8	KIR6.1|uKATP-1	potassium inwardly rectifying channel subfamily J member 8	protein-coding
112170	chr19	5655271	5655630	+	0	NA	intron (NM_001320571, intron 11 of 18)	AluJb|SINE|Alu	24788	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
4039	chr1	18951471	18952830	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	4526	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
138276	chr2	203651401	203651600	+	0	NA	Intergenic	MIR|SINE|MIR	-54975	NM_001243078	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
163643	chr3	52142151	52142450	+	0	NA	intron (NM_001161580, intron 6 of 9)	intron (NM_001161580, intron 6 of 9)	12123	NM_015426	25886		NM_015426	ENSG00000164087	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
195507	chr6	37183021	37184300	+	0	NA	Intergenic	Intergenic	13508	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
20263	chr1	194039521	194039780	+	0	NA	Intergenic	Intergenic	734905	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
185027	chr5	115551501	115551700	+	0	NA	Intergenic	Intergenic	-6825	NM_020177	56929		NM_020177	ENSG00000145780	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog C	protein-coding
99384	chr17	49971201	49972230	+	0	NA	intron (NM_138281, intron 1 of 2)	CpG	-1051	NM_001934	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
220218	chr8	96260171	96260330	+	0	NA	intron (NM_001362964, intron 1 of 7)	intron (NM_001362964, intron 1 of 7)	1360	NM_015942	51001		NM_015942	ENSG00000156469	MTERF3	CGI-12|MTERFD1	mitochondrial transcription termination factor 3	protein-coding
63949	chr14	22098971	22099130	+	0	NA	Intergenic	L1MEf|LINE|L1	333703	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
223692	chr8	144423651	144423980	+	0	NA	exon (NM_016208, exon 10 of 10)	exon (NM_016208, exon 10 of 10)	4733	NM_016208	51160		NM_016208	ENSG00000160948	VPS28	CIIA	VPS28 subunit of ESCRT-I	protein-coding
87428	chr16	70689801	70690400	+	0	NA	intron (NM_001351157, intron 17 of 17)	intron (NM_001351157, intron 17 of 17)	-4047	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
69754	chr14	99021501	99021950	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	250472	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
57068	chr12	121012921	121013430	+	0	NA	intron (NM_001286198, intron 1 of 6)	intron (NM_001286198, intron 1 of 6)	3312	NM_001286191	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
77230	chr15	81284501	81284700	+	0	NA	intron (NM_172217, intron 9 of 18)	intron (NM_172217, intron 9 of 18)	-12370	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
163744	chr3	52354051	52354350	+	0	NA	intron (NM_015512, intron 20 of 77)	MIR|SINE|MIR	37881	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
181502	chr5	43010521	43011150	+	0	NA	Intergenic	Intergenic	7976	NR_034086	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
36066	chr11	2963271	2963780	+	0	NA	TTS (NR_002982)	TTS (NR_002982)	368	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
50333	chr12	47078321	47079100	+	0	NA	promoter-TSS (NM_001281429)	promoter-TSS (NM_001281429)	-893	NM_001281429	91523		NM_138371	ENSG00000179715	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
137571	chr2	197257751	197258150	+	0	NA	intron (NR_046837, intron 5 of 5)	L1MB3|LINE|L1	44569	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
199033	chr6	111290921	111291200	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	31721	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
162595	chr3	48690551	48690750	+	0	NA	intron (NM_016291, intron 4 of 5)	AluSx1|SINE|Alu	-4735	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
60670	chr13	43054651	43055880	+	0	NA	intron (NM_013238, intron 1 of 5)	LTR19C|LTR|ERV1	31679	NM_013238	29103		NM_013238	ENSG00000120675	DNAJC15	DNAJD1|HSD18|MCJ	DnaJ heat shock protein family (Hsp40) member C15	protein-coding
88099	chr16	81522021	81523130	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-11327	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
55702	chr12	107774321	107774580	+	0	NA	promoter-TSS (NM_203436)	promoter-TSS (NM_203436)	65	NM_203436	121549		NM_203436	ENSG00000187855	ASCL4	ASH-4|HASH4|bHLHa44	achaete-scute family bHLH transcription factor 4	protein-coding
219985	chr8	89848251	89848730	+	0	NA	Intergenic	Intergenic	-53378	NM_004337	734		NM_004337	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
56031	chr12	110432671	110433030	+	0	NA	Intergenic	AluSz|SINE|Alu	17487	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
32801	chr10	109884171	109884550	+	0	NA	intron (NM_020383, intron 8 of 20)	intron (NM_020383, intron 8 of 20)	38886	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
209802	chr7	87875101	87875480	+	0	NA	intron (NM_018843, intron 1 of 11)	intron (NM_018843, intron 1 of 11)	1070	NM_018843	55972		NM_018843	ENSG00000075303	SLC25A40	MCFP	solute carrier family 25 member 40	protein-coding
117523	chr19	20247001	20247250	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	79911	NM_052852	90649		NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
32495	chr10	102711601	102712300	+	0	NA	intron (NM_004311, intron 1 of 5)	intron (NM_004311, intron 1 of 5)	2447	NM_004311	403		NM_004311	ENSG00000138175	ARL3	ARFL3|JBTS35|RP83	ADP ribosylation factor like GTPase 3	protein-coding
93404	chr17	18362771	18364000	+	0	NA	5' UTR (NM_001281786, exon 1 of 11)	5' UTR (NM_001281786, exon 1 of 11)	165	NM_004169	6470		NM_004169	ENSG00000176974	SHMT1	CSHMT|SHMT	serine hydroxymethyltransferase 1	protein-coding
8907	chr1	43969571	43970530	+	0	NA	promoter-TSS (NM_001319167)	promoter-TSS (NM_001319167)	40	NM_001319170	1802		NM_001384	ENSG00000132768	DPH2	DEDSSH2|DPH2L2	diphthamide biosynthesis 2	protein-coding
68639	chr14	89903251	89903950	+	0	NA	intron (NM_145231, intron 5 of 5)	intron (NM_145231, intron 5 of 5)	50936	NM_001284268	90141		NM_145231	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
71005	chr14	104732571	104733330	+	0	NA	intron (NM_199165, intron 1 of 12)	intron (NM_199165, intron 1 of 12)	3106	NM_001320424	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
62237	chr13	98528701	98529180	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-6815	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
32108	chr10	101213371	101214000	+	0	NA	Intergenic	Intergenic	15275	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
152048	chr22	19596651	19597850	+	0	NA	Intergenic	Intergenic	-30411	NR_024381	150185		NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
72033	chr15	28326971	28327130	+	0	NA	intron (NR_031672, intron 2 of 2)	AluSg7|SINE|Alu	-4871	NM_004667	8924		NM_004667	ENSG00000128731	HERC2	D15F37S1|MRT38|SHEP1|jdf2|p528	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding
226809	chr9	77174801	77175250	+	0	NA	Intergenic	AluJr|SINE|Alu	-2420	NM_015186	23230		NM_015186	ENSG00000197969	VPS13A	BLTP5A|CHAC|CHOREIN	vacuolar protein sorting 13 homolog A	protein-coding
129736	chr2	70948071	70949180	+	0	NA	promoter-TSS (NR_110273)	promoter-TSS (NR_110273)	-14	NR_110273	101927750		NR_110273	ENSG00000239322	ATP6V1B1-AS1	-	ATP6V1B1 antisense RNA 1	ncRNA
156455	chr22	41249151	41249450	+	0	NA	intron (NM_001278651, intron 16 of 16)	intron (NM_001278651, intron 16 of 16)	3750	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
235159	chrX	41120621	41120880	+	0	NA	intron (NM_001039590, intron 1 of 44)	AluY|SINE|Alu	35305	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
32460	chr10	102641571	102643200	+	0	NA	Intergenic	CpG	-2094	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
191022	chr6	3117101	3117480	+	0	NA	Intergenic	Intergenic	-1086	NR_026649	670		NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase like	protein-coding
105157	chr17	82254401	82255830	+	0	NA	intron (NM_139062, intron 3 of 9)	CpG	18447	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
118436	chr19	35847021	35847550	+	0	NA	intron (NM_004646, intron 11 of 28)	AluY|SINE|Alu	5219	NM_004646	4868		NM_004646	ENSG00000161270	NPHS1	CNF|NPHN|nephrin	NPHS1 adhesion molecule, nephrin	protein-coding
180504	chr5	14261901	14262100	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	118658	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
70694	chr14	103122971	103123930	+	0	NA	promoter-TSS (NR_138038)	promoter-TSS (NR_138038)	-11	NM_001371220	7127		NM_006291	ENSG00000185215	TNFAIP2	B94|EXOC3L3	TNF alpha induced protein 2	protein-coding
96655	chr17	40624451	40624750	+	0	NA	TTS (NM_003079)	TTS (NM_003079)	23218	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
169859	chr3	177196901	177198300	+	0	NA	promoter-TSS (NM_001321194)	promoter-TSS (NM_001321194)	-118	NM_001374330	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
69046	chr14	91864421	91864680	+	0	NA	intron (NM_001128596, intron 1 of 11)	intron (NM_001128596, intron 1 of 11)	2986	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
94083	chr17	27567651	27567950	+	0	NA	intron (NM_001367810, intron 2 of 18)	intron (NM_001367810, intron 2 of 18)	-63388	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
78382	chr15	91852571	91855200	+	0	NA	promoter-TSS (NR_135775)	promoter-TSS (NR_135775)	177	NM_001145044	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
208268	chr7	65766121	65766600	+	0	NA	intron (NR_038378, intron 1 of 7)	AluSx|SINE|Alu	4450	NR_038378	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
114072	chr19	11096071	11097050	+	0	NA	intron (NM_001195800, intron 1 of 15)	MLT1F1|LTR|ERVL-MaLR	-6901	NR_163945	115271120		NR_163945		LDLR-AS1	-	LDLR antisense RNA 1	ncRNA
10847	chr1	77959071	77959800	+	0	NA	intron (NR_146539, intron 16 of 22)	intron (NR_146539, intron 16 of 22)	19637	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
122558	chr19	49657371	49658930	+	0	NA	intron (NM_021228, intron 10 of 10)	intron (NM_021228, intron 10 of 10)	-6992	NM_001282519	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
74179	chr15	55407521	55408810	+	0	NA	promoter-TSS (NM_001198784)	promoter-TSS (NM_001198784)	194	NM_020739	9236		NM_004748	ENSG00000260916	CCPG1	CPR8	cell cycle progression 1	protein-coding
34906	chr11	396171	396730	+	0	NA	intron (NM_007183, intron 1 of 12)	intron (NM_007183, intron 1 of 12)	2241	NM_007183	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
75146	chr15	64611951	64612250	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	91181	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
134498	chr2	143326751	143327050	+	0	NA	intron (NM_018460, intron 6 of 13)	L1PA7|LINE|L1	197481	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
78518	chr15	92942871	92943580	+	0	NA	intron (NM_001042572, intron 9 of 12)	intron (NM_001042572, intron 9 of 12)	38826	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
228825	chr9	112061151	112061550	+	0	NA	intron (NM_022486, intron 13 of 16)	intron (NM_022486, intron 13 of 16)	113947	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
27406	chr10	31349401	31349700	+	0	NA	intron (NM_001323675, intron 1 of 6)	L1MA8|LINE|L1	27890	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
31342	chr10	93074851	93075030	+	0	NA	exon (NM_000783, exon 3 of 7)	exon (NM_000783, exon 3 of 7)	1047	NM_000783	1592		NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	cytochrome P450 family 26 subfamily A member 1	protein-coding
59934	chr13	31149721	31149980	+	0	NA	intron (NM_001286503, intron 8 of 16)	intron (NM_001286503, intron 8 of 16)	12054	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
157237	chr22	43335751	43335850	+	0	NA	intron (NM_173050, intron 2 of 21)	intron (NM_173050, intron 2 of 21)	7572	NM_173050	80274		NM_152514	ENSG00000159307	SCUBE1	-	signal peptide, CUB domain and EGF like domain containing 1	protein-coding
187067	chr5	140131721	140132680	+	0	NA	Intergenic	Intergenic	6263	NM_001007189	492311		NM_001007189	ENSG00000182700	IGIP	C5orf53	IgA inducing protein	protein-coding
95249	chr17	35431321	35431580	+	0	NA	intron (NM_001289009, intron 1 of 3)	MER51-int|LTR|ERV1	1050	NM_018042	55106		NM_018042	ENSG00000172123	SLFN12	SLFN3	schlafen family member 12	protein-coding
190024	chr5	177500651	177501730	+	0	NA	TTS (NM_001375794)	TTS (NM_001375794)	-3585	NM_213636	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
103043	chr17	77137751	77138580	+	0	NA	intron (NM_001204410, intron 3 of 18)	LTR8|LTR|ERV1	-2804	NM_001143999	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
91241	chr17	3946671	3946830	+	0	NA	intron (NM_174953, intron 8 of 22)	intron (NM_174953, intron 8 of 22)	17687	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
26203	chr10	14558971	14559680	+	0	NA	intron (NM_001320736, intron 1 of 4)	intron (NM_001320736, intron 1 of 4)	-3145	NM_001320738	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
94276	chr17	28709151	28709250	+	0	NA	intron (NM_001304949, intron 1 of 4)	intron (NM_001304949, intron 1 of 4)	904	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
160577	chr3	30729521	30729780	+	0	NA	intron (NM_207359, intron 14 of 14)	MamRep137|DNA|TcMar-Tigger	123049	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
203324	chr6	170176021	170176500	+	0	NA	Intergenic	CpG	15618	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
176182	chr4	83382751	83383050	+	0	NA	Intergenic	MER41B|LTR|ERV1	-47747	NM_001166498	10855		NM_006665	ENSG00000173083	HPSE	HPA|HPA1|HPR1|HPSE1|HSE1	heparanase	protein-coding
115563	chr19	15631771	15632000	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-9012	NM_001199208	4051		NM_000896	ENSG00000186529	CYP4F3	CPF3|CYP4F|CYPIVF3|LTB4H	cytochrome P450 family 4 subfamily F member 3	protein-coding
181706	chr5	50662651	50663100	+	0	NA	Intergenic	Intergenic	-3056	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
58523	chr12	132203901	132204100	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	2028	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
214979	chr7	152122571	152122730	+	0	NA	TTS (NM_001371462)	TTS (NM_001371462)	47613	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
55506	chr12	104987621	104987880	+	0	NA	intron (NM_152318, intron 1 of 3)	MIRc|SINE|MIR	1434	NM_152318	121053		NM_152318	ENSG00000151131	NOPCHAP1	C12orf45|DDSR1	NOP protein chaperone 1	protein-coding
121523	chr19	47223571	47224430	+	0	NA	intron (NM_001127242, intron 1 of 1)	intron (NM_001127242, intron 1 of 1)	-2942	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
106539	chr18	21593571	21594350	+	0	NA	intron (NM_052911, intron 1 of 11)	MER20|DNA|hAT-Charlie	6744	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
236537	chrX	72126401	72127000	+	0	NA	TTS (NM_001024455)	TTS (NM_001024455)	5215	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
90983	chr17	2706751	2707250	+	0	NA	intron (NM_001366662, intron 1 of 25)	intron (NM_001366662, intron 1 of 25)	4764	NM_001366661	23277		NM_015229	ENSG00000132361	CLUH	CLU1	clustered mitochondria homolog	protein-coding
120626	chr19	45058501	45058730	+	0	NA	intron (NM_001278439, intron 6 of 19)	AluSx4|SINE|Alu	-17012	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
19231	chr1	172600971	172601330	+	0	NA	intron (NM_001282751, intron 18 of 21)	L2a|LINE|L2	-57858	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
151887	chr22	18853151	18853400	+	0	NA	intron (NR_135922, intron 2 of 5)	intron (NR_135922, intron 2 of 5)	3157	NR_135922	102725072		NR_135922	ENSG00000293159	POM121L15P	-	POM121 transmembrane nucleoporin like 15, pseudogene	pseudo
220120	chr8	94641021	94641350	+	0	NA	promoter-TSS (NM_001122827)	promoter-TSS (NM_001122827)	11	NM_017697	54845		NM_017697	ENSG00000104413	ESRP1	DFNB109|RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
31708	chr10	97666501	97666700	+	0	NA	intron (NM_018425, intron 7 of 8)	intron (NM_018425, intron 7 of 8)	20641	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
30006	chr10	73768521	73769630	+	0	NA	exon (NM_004922, exon 18 of 24)	exon (NM_004922, exon 18 of 24)	-3201	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
101396	chr17	67364221	67364580	+	0	NA	intron (NM_001316341, intron 1 of 12)	intron (NM_001316341, intron 1 of 12)	2177	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
73450	chr15	43329601	43331100	+	0	NA	promoter-TSS (NM_001324366)	promoter-TSS (NM_001324366)	-1	NM_001324364	161823		NM_001012969	ENSG00000168803	ADAL	HsMAPDA	adenosine deaminase like	protein-coding
158817	chr3	9743801	9744000	+	0	NA	exon (NM_004634, exon 8 of 14)	exon (NM_004634, exon 8 of 14)	-6044	NR_148930	4968		NM_002542	ENSG00000114026	OGG1	HMMH|HOGG1|MUTM|OGH1	8-oxoguanine DNA glycosylase	protein-coding
18864	chr1	167932451	167933250	+	0	NA	intron (NM_001143674, intron 2 of 5)	L4_A_Mam|LINE|RTE-X	3146	NR_026550	25874		NM_015415	ENSG00000143158	MPC2	BRP44|SLC54A2	mitochondrial pyruvate carrier 2	protein-coding
118897	chr19	38696501	38696900	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	47774	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
182169	chr5	56673221	56673480	+	0	NA	Intergenic	L2a|LINE|L2	-67094	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
24272	chr1	236418301	236418500	+	0	NA	intron (NM_080738, intron 3 of 5)	AluSx1|SINE|Alu	22987	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
204795	chr7	5629551	5630350	+	0	NA	intron (NM_207111, intron 15 of 16)	intron (NM_207111, intron 15 of 16)	37134	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
129532	chr2	69714271	69715080	+	0	NA	intron (NM_001320698, intron 2 of 14)	intron (NM_001320698, intron 2 of 14)	-27459	NM_001320702	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
97402	chr17	43386801	43387000	+	0	NA	intron (NR_027413, intron 1 of 3)	AluSq2|SINE|Alu	1998	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
25787	chr10	11167451	11169350	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	3370	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
160320	chr3	27624871	27625230	+	0	NA	Intergenic	Intergenic	97273	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
117090	chr19	19141671	19141830	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3272	NM_001256766	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
157010	chr22	42523101	42523300	+	0	NA	Intergenic	Intergenic	-3404	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
207591	chr7	44961501	44964180	+	0	NA	exon (NM_033054, exon 22 of 22)	exon (NM_033054, exon 22 of 22)	16175	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
84794	chr16	31038271	31038630	+	0	NA	intron (NM_001272096, intron 8 of 11)	intron (NM_001272096, intron 8 of 11)	4892	NM_004604	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
3112	chr1	12272101	12272330	+	0	NA	intron (NM_018156, intron 17 of 68)	MamRTE1|LINE|RTE-BovB	42185	NM_018156	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
136663	chr2	180937451	180937980	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-42670	NM_001278555	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
173403	chr4	8079251	8079350	+	0	NA	intron (NM_001130086, intron 5 of 17)	intron (NM_001130086, intron 5 of 17)	-7312	NM_001286688	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
148163	chr20	63525721	63526280	+	0	NA	Intergenic	AluJo|SINE|Alu	5235	NM_024299	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
150953	chr21	44306621	44307280	+	0	NA	intron (NM_001002021, intron 5 of 24)	intron (NM_001002021, intron 5 of 24)	6897	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
9400	chr1	47442421	47442950	+	0	NA	Intergenic	Intergenic	4641	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
215637	chr8	220451	220550	+	0	NA	intron (NR_003572, intron 2 of 3)	(CCCTAAC)n|Simple_repeat|Simple_repeat	-11637	NM_001287255	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
42223	chr11	68042851	68042950	+	0	NA	promoter-TSS (NM_006053)	promoter-TSS (NM_006053)	-80	NM_006053	10312		NM_006019	ENSG00000110719	TCIRG1	ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3	T cell immune regulator 1, ATPase H+ transporting V0 subunit a3	protein-coding
101368	chr17	67241871	67242350	+	0	NA	intron (NM_001330447, intron 2 of 32)	intron (NM_001330447, intron 2 of 32)	-2666	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
68331	chr14	77593071	77594150	+	0	NA	intron (NM_004863, intron 2 of 11)	intron (NM_004863, intron 2 of 11)	23027	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
44762	chr11	112175151	112175650	+	0	NA	promoter-TSS (NM_001256400)	promoter-TSS (NM_001256400)	-112	NM_001256398	83875		NM_031938	ENSG00000197580	BCO2	B-DIOX-II|BCDO2	beta-carotene oxygenase 2	protein-coding
151506	chr21	46403951	46404050	+	0	NA	intron (NM_006031, intron 27 of 46)	CpG	-54891	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
209787	chr7	87594871	87595030	+	0	NA	intron (NM_001348946, intron 3 of 27)	intron (NM_001348946, intron 3 of 27)	5934	NM_001348946	5243		NM_000927	ENSG00000085563	ABCB1	ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1|p-170	ATP binding cassette subfamily B member 1	protein-coding
47020	chr12	370521	370780	+	0	NA	intron (NM_001042603, intron 3 of 27)	L1PA5|LINE|L1	18670	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
139789	chr2	230254021	230255200	+	0	NA	intron (NM_001278451, intron 11 of 25)	intron (NM_001278451, intron 11 of 25)	28874	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
34337	chr10	132184071	132184430	+	0	NA	3' UTR (NM_001323086, exon 24 of 24)	3' UTR (NM_001323086, exon 24 of 24)	-2698	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
150603	chr21	43359701	43360300	+	0	NA	intron (NR_131902, intron 1 of 1)	intron (NR_131902, intron 1 of 1)	2349	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
180165	chr5	1422451	1422550	+	0	NA	intron (NM_001044, intron 4 of 14).2	intron (NM_001044, intron 4 of 14).2	22940	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
147011	chr20	53579701	53581200	+	0	NA	intron (NM_006526, intron 2 of 5)	intron (NM_006526, intron 2 of 5)	13389	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
83870	chr16	28922271	28923250	+	0	NA	intron (NM_024816, intron 2 of 12)	AluSc8|SINE|Alu	2478	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
2628	chr1	10209801	10211230	+	0	NA	promoter-TSS (NM_001365951)	promoter-TSS (NM_001365951)	-55	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
197641	chr6	83861271	83861430	+	0	NA	intron (NM_016230, intron 1 of 15)	intron (NM_016230, intron 1 of 15)	1661	NM_016230	51167		NM_016230	ENSG00000065615	CYB5R4	NCB5OR|cb5/cb5R|dJ676J13.1	cytochrome b5 reductase 4	protein-coding
113455	chr19	9854271	9854630	+	0	NA	exon (NM_001304348, exon 5 of 5)	exon (NM_001304348, exon 5 of 5)	3725	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
188860	chr5	159266471	159266630	+	0	NA	intron (NM_145049, intron 1 of 10)	THE1A-int|LTR|ERVL-MaLR	3260	NM_145049	134510		NM_145049	ENSG00000164332	UBLCP1	CPUB1	ubiquitin like domain containing CTD phosphatase 1	protein-coding
29228	chr10	69056771	69058280	+	0	NA	Intergenic	Intergenic	-30078	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
175154	chr4	55544801	55545080	+	0	NA	intron (NM_004898, intron 1 of 22)	L1ME4b|LINE|L1	992	NM_001267843	9575		NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
63767	chr14	21250901	21251650	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluY|SINE|Alu	18167	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
51648	chr12	53030151	53031000	+	0	NA	intron (NM_001300821, intron 8 of 14)	AluSc|SINE|Alu	-16416	NM_198316	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
27355	chr10	30703951	30706330	+	0	NA	intron (NR_036438, intron 7 of 9)	intron (NR_036438, intron 7 of 9)	12866	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
190942	chr6	2893271	2894050	+	0	NA	intron (NM_004155, intron 4 of 6)	intron (NM_004155, intron 4 of 6)	9649	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
3027	chr1	12125821	12126450	+	0	NA	intron (NM_001281430, intron 10 of 13)	intron (NM_001281430, intron 10 of 13)	-40808	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
136764	chr2	181393251	181394600	+	0	NA	intron (NR_130784, intron 4 of 4)	AluY|SINE|Alu	-62967	NM_001316312	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
9090	chr1	45011801	45013250	+	0	NA	intron (NM_000374, intron 1 of 9)	intron (NM_000374, intron 1 of 9)	271	NR_158185	7389		NM_000374	ENSG00000126088	UROD	PCT|UPD	uroporphyrinogen decarboxylase	protein-coding
4205	chr1	19451051	19451350	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	33095	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
139617	chr2	225052621	225053600	+	0	NA	Intergenic	Intergenic	-10642	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
209619	chr7	77701851	77702350	+	0	NA	intron (NM_198467, intron 1 of 7)	AluSx3|SINE|Alu	-4755	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
208296	chr7	66073451	66073750	+	0	NA	Intergenic	AluSp|SINE|Alu	-2219	NM_001024943	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
134466	chr2	143226801	143227200	+	0	NA	intron (NM_018460, intron 4 of 13)	intron (NM_018460, intron 4 of 13)	97581	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
213271	chr7	134650721	134651000	+	0	NA	intron (NM_001293085, intron 2 of 3)	AluY|SINE|Alu	4007	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
228547	chr9	101521621	101521880	+	0	NA	Intergenic	L1PB1|LINE|L1	-12103	NM_019592	56254		NM_019592	ENSG00000155827	RNF20	BRE1|BRE1A|hBRE1	ring finger protein 20	protein-coding
233347	chr9	137452211	137452550	+	0	NA	exon (NM_001178064, exon 11 of 15)	exon (NM_001178064, exon 11 of 15)	-2294	NR_106964	102466223		NR_106964	ENSG00000284317	MIR7114	hsa-mir-7114	microRNA 7114	ncRNA
103349	chr17	78104521	78105450	+	0	NA	3' UTR (NM_018996, exon 21 of 21)	3' UTR (NM_018996, exon 21 of 21)	23770	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
185138	chr5	119310471	119311080	+	0	NA	intron (NM_001077654, intron 1 of 1)	AluSz|SINE|Alu	-22400	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
24625	chr1	246576971	246577350	+	0	NA	intron (NM_001139459, intron 1 of 8)	intron (NM_001139459, intron 1 of 8)	10704	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
150704	chr21	43721621	43721980	+	0	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	2671	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
137419	chr2	196288971	196289530	+	0	NA	intron (NM_001348768, intron 14 of 28)	intron (NM_001348768, intron 14 of 28)	29226	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
207417	chr7	44460171	44460850	+	0	NA	intron (NM_015332, intron 2 of 5)	intron (NM_015332, intron 2 of 5)	30148	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
165862	chr3	105907951	105908050	+	0	NA	Intergenic	Intergenic	-38599	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
11215	chr1	88867301	88867950	+	0	NA	intron (NM_001514, intron 2 of 6)	intron (NM_001514, intron 2 of 6)	23942	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
226612	chr9	73168571	73169300	+	0	NA	intron (NM_000700, intron 11 of 12)	intron (NM_000700, intron 11 of 12)	17070	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
233223	chr9	137235271	137235700	+	0	NA	intron (NM_080877, intron 12 of 12)	intron (NM_080877, intron 12 of 12)	4552	NM_080877	142680		NM_080877	ENSG00000198569	SLC34A3	HHRH|NPT2C|NPTIIc	solute carrier family 34 member 3	protein-coding
204822	chr7	5690551	5691530	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-10579	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
182237	chr5	56996221	56996780	+	0	NA	Intergenic	Intergenic	-44370	NM_152622	166968		NM_152622	ENSG00000155545	MIER3	-	MIER family member 3	protein-coding
26726	chr10	22677451	22678380	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	36193	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
238409	chrX	150572201	150572400	+	0	NA	intron (NM_001376908, intron 1 of 14)	MIRc|SINE|MIR	3679	NM_000252	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
108407	chr18	69909071	69909430	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	38623	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
136286	chr2	174729651	174730530	+	0	NA	Intergenic	CpG	10290	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
98749	chr17	48073951	48074660	+	0	NA	intron (NM_006807, intron 4 of 4)	intron (NM_006807, intron 4 of 4)	25946	NM_003204	4779		NM_003204	ENSG00000082641	NFE2L1	LCR-F1|NRF-1|NRF1|TCF11	NFE2 like bZIP transcription factor 1	protein-coding
152067	chr22	19723751	19724700	+	0	NA	TTS (NM_002688)	TTS (NM_002688)	686	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
167478	chr3	129126421	129128930	+	0	NA	3' UTR (NM_001199469, exon 12 of 12)	3' UTR (NM_001199469, exon 12 of 12)	-5525	NM_001204883	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
211291	chr7	103159521	103159780	+	0	NA	Intergenic	Intergenic	-10551	NM_198990	222236		NM_198990	ENSG00000161048	NAPEPLD	C7orf18|FMP30|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding
109066	chr18	79903501	79903900	+	0	NA	3' UTR (NM_025078, exon 6 of 6)	3' UTR (NM_025078, exon 6 of 6)	40032	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
3075	chr1	12183901	12185230	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	-7148	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
80539	chr16	2776451	2779650	+	0	NA	promoter-TSS (NM_007108)	promoter-TSS (NM_007108)	-770	NM_007108	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
9344	chr1	46674621	46674880	+	0	NA	TTS (NM_014774)	TTS (NM_014774)	714	NR_038827	100130197		NR_038827	ENSG00000228237	EFCAB14-AS1	KIAA0494-AS1	EFCAB14 antisense RNA 1	ncRNA
32962	chr10	110456771	110456930	+	0	NA	Intergenic	Intergenic	-41057	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
81066	chr16	4332071	4332650	+	0	NA	exon (NM_032575, exon 2 of 7).2	exon (NM_032575, exon 2 of 7).2	-4020	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
77954	chr15	89363371	89363530	+	0	NA	intron (NR_133002, intron 1 of 5)	intron (NR_133002, intron 1 of 5)	929	NR_133002	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
62551	chr13	99859521	99860080	+	0	NA	intron (NM_206808, intron 3 of 8)	intron (NM_206808, intron 3 of 8)	97365	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
51426	chr12	52020501	52021500	+	0	NA	Intergenic	Intergenic	-1832	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
80768	chr16	3175171	3175850	+	0	NA	Intergenic	CpG	-12694	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
199682	chr6	122495521	122495900	+	0	NA	intron (NM_001270393, intron 3 of 7)	L1PA15-16|LINE|L1	23793	NM_181794	5570		NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
168644	chr3	150286521	150286880	+	0	NA	intron (NR_110186, intron 2 of 3)	intron (NR_110186, intron 2 of 3)	37047	NR_110186	101928022		NR_110186		LINC01214	-	long intergenic non-protein coding RNA 1214	ncRNA
184533	chr5	102294021	102294280	+	0	NA	intron (NM_180991, intron 1 of 12)	AluSx|SINE|Alu	2134	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
162826	chr3	49167901	49168300	+	0	NA	Intergenic	Intergenic	-1769	NM_022903	64925		NM_022903	ENSG00000177352	CCDC71	-	coiled-coil domain containing 71	protein-coding
11654	chr1	91803171	91804400	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	82366	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
88570	chr16	85556371	85557800	+	0	NA	Intergenic	Intergenic	-54324	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
233841	chrX	1503871	1504030	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	33235	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
214946	chr7	151768721	151770280	+	0	NA	intron (NM_016203, intron 3 of 15)	MLT1C|LTR|ERVL-MaLR	-33186	NM_001304527	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
130322	chr2	84975171	84975600	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	4224	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
177375	chr4	110693071	110693230	+	0	NA	Intergenic	L1HS|LINE|L1	-51027	NM_001204398	5308		NM_000325	ENSG00000164093	PITX2	ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired like homeodomain 2	protein-coding
214690	chr7	150977621	150978600	+	0	NA	5' UTR (NM_000238, exon 1 of 15)	5' UTR (NM_000238, exon 1 of 15)	204	NM_172056	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
157169	chr22	42961701	42962330	+	0	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	-1679	NM_001349970	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
177840	chr4	127782921	127783330	+	0	NA	promoter-TSS (NM_001317382)	promoter-TSS (NM_001317382)	-398	NM_001317382	22824		NM_014278	ENSG00000164070	HSPA4L	APG-1|APG1|HSPH3|Osp94	heat shock protein family A (Hsp70) member 4 like	protein-coding
114196	chr19	11418171	11419330	+	0	NA	exon (NM_001035223, exon 2 of 19)	exon (NM_001035223, exon 2 of 19)	564	NM_001161616	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
154116	chr22	31104821	31105330	+	0	NA	TTS (NM_006932)	TTS (NM_006932)	2493	NM_080430	140606		NM_080430	ENSG00000198832	SELENOM	SELM|SEPM	selenoprotein M	protein-coding
135860	chr2	170928451	170929800	+	0	NA	promoter-TSS (NM_015530)	promoter-TSS (NM_015530)	-128	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
96722	chr17	41651751	41652050	+	0	NA	Intergenic	Intergenic	-11701	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
202791	chr6	159105091	159105750	+	0	NA	Intergenic	Intergenic	-60268	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
228792	chr9	111691851	111691950	+	0	NA	exon (NM_001080551, exon 23 of 24)	exon (NM_001080551, exon 23 of 24)	30295	NM_001017998	2790		NM_001017998	ENSG00000242616	GNG10	-	G protein subunit gamma 10	protein-coding
140066	chr2	231427001	231427830	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	28521	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
34139	chr10	128049651	128050430	+	0	NA	intron (NM_001323357, intron 3 of 16)	intron (NM_001323357, intron 3 of 16)	2428	NM_001323357	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
16050	chr1	152515571	152515730	+	0	NA	exon (NM_019060, exon 2 of 2)	exon (NM_019060, exon 2 of 2)	1168	NM_019060	54544		NM_019060	ENSG00000169509	CRCT1	C1orf42|NICE-1|NICE1	cysteine rich C-terminal 1	protein-coding
138138	chr2	202306601	202307000	+	0	NA	Intergenic	Intergenic	13749	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
210308	chr7	99468451	99469150	+	0	NA	Intergenic	Intergenic	-2633	NM_001003713	9551		NM_004889	ENSG00000241468	ATP5MF	ATP5J2|ATP5JL	ATP synthase membrane subunit f	protein-coding
171344	chr3	196048151	196048650	+	0	NA	TTS (NM_001128148)	TTS (NM_001128148)	33690	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
146638	chr20	50283971	50284400	+	0	NA	Intergenic	MIRb|SINE|MIR	-8535	NR_034124	284751		NM_001025463	ENSG00000203999	LINC01270	-	long intergenic non-protein coding RNA 1270	ncRNA
12456	chr1	107820851	107821000	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-76298	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
56945	chr12	120477721	120477980	+	0	NA	intron (NM_001037494, intron 1 of 2)	AluSq2|SINE|Alu	8008	NM_001037494	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
202460	chr6	158157021	158157400	+	0	NA	intron (NR_073096, intron 2 of 12)	AluSx1|SINE|Alu	11052	NM_032861	84947		NM_032861	ENSG00000122335	SERAC1	-	serine active site containing 1	protein-coding
226966	chr9	81113521	81113780	+	0	NA	Intergenic	Intergenic	575885	NM_001303104	7088		NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1|TLE-1	TLE family member 1, transcriptional corepressor	protein-coding
155272	chr22	38058401	38059250	+	0	NA	intron (NM_001039583, intron 2 of 12)	AluSq2|SINE|Alu	1421	NM_012407	9463		NM_012407	ENSG00000100151	PICK1	PICK|PRKCABP	protein interacting with PRKCA 1	protein-coding
168743	chr3	151145971	151146430	+	0	NA	intron (NM_053002, intron 4 of 42)	MER5A|DNA|hAT-Charlie	57016	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
178229	chr4	142845601	142846800	+	0	NA	intron (NM_001385337, intron 1 of 20)	CpG	101	NM_001385335	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
52624	chr12	56266101	56267950	+	0	NA	promoter-TSS (NM_001099337)	promoter-TSS (NM_001099337)	83	NM_144576	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
179939	chr5	771621	771880	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	12979	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
193242	chr6	29930151	29930680	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-3200	NR_001317	80868		NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B	ncRNA
114168	chr19	11369651	11369750	+	0	NA	Intergenic	Intergenic	-4966	NM_175871	126074		NM_175871	ENSG00000173928	SWSAP1	C19orf39|SWS1AP1|ZSWIM7AP1	SWIM-type zinc finger 7 associated protein 1	protein-coding
11333	chr1	89524021	89525930	+	0	NA	5' UTR (NM_001134476, exon 1 of 8)	5' UTR (NM_001134476, exon 1 of 8)	146	NM_001369819	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
53781	chr12	68815121	68815780	+	0	NA	intron (NM_001278462, intron 3 of 5)	AluJb|SINE|Alu	6426	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
79265	chr16	495471	495700	+	0	NA	intron (NM_001370401, intron 6 of 14)	LTR41|LTR|ERVL	20661	NM_001142272	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
220674	chr8	101167151	101167250	+	0	NA	non-coding (NR_164368, exon 1 of 1)	non-coding (NR_164368, exon 1 of 1)	3039	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
151381	chr21	45915921	45916380	+	0	NA	intron (NM_001348241, intron 12 of 17)	intron (NM_001348241, intron 12 of 17)	-56820	NR_109931	101928796		NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
73111	chr15	41126271	41126630	+	0	NA	Intergenic	L1M4b|LINE|L1	-10170	NM_017553	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
129905	chr2	73235501	73236400	+	0	NA	intron (NM_001166285, intron 2 of 12)	intron (NM_001166285, intron 2 of 12)	1642	NM_006429	10574		NM_006429	ENSG00000135624	CCT7	CCTETA|CCTH|NIP7-1|TCP1ETA	chaperonin containing TCP1 subunit 7	protein-coding
236316	chrX	68826821	68827200	+	0	NA	Intergenic	Intergenic	-2011	NM_004429	1947		NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
105100	chr17	82152221	82153200	+	0	NA	TTS (NM_001316321)	TTS (NM_001316321)	-54474	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
12305	chr1	100923371	100923730	+	0	NA	intron (NM_133496, intron 8 of 10)	AluJr|SINE|Alu	27460	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
147884	chr20	62865301	62865700	+	0	NA	Intergenic	FRAM|SINE|Alu	-3678	NM_001301726	10732		NM_006602	ENSG00000101190	TCFL5	CHA|E2BP-1|Figlb|SOSF1|bHLHe82	transcription factor like 5	protein-coding
140098	chr2	231461071	231461230	+	0	NA	promoter-TSS (NR_004398)	promoter-TSS (NR_004398)	-708	NR_004398	25826		NR_004398	ENSG00000202400	SNORD82	RNU82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA
154634	chr22	36323071	36323480	+	0	NA	intron (NM_002473, intron 5 of 40)	MIRc|SINE|MIR	-36368	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
205606	chr7	22082851	22083930	+	0	NA	Intergenic	(CGCCC)n|Simple_repeat|Simple_repeat	110355	NM_001367601	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
103376	chr17	78135521	78135780	+	0	NA	intron (NM_152468, intron 9 of 15)	intron (NM_152468, intron 9 of 15)	-3223	NM_007267	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
148310	chr20	63735271	63736900	+	0	NA	promoter-TSS (NM_017806)	promoter-TSS (NM_017806)	384	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
74668	chr15	61859351	61859450	+	0	NA	intron (NM_017684, intron 80 of 82)	intron (NM_017684, intron 80 of 82)	129482	NR_146448	100506530		NR_146448	ENSG00000259284	LINC02349	-	long intergenic non-protein coding RNA 2349	ncRNA
158311	chr22	50422221	50422750	+	0	NA	intron (NM_001351646, intron 9 of 22)	intron (NM_001351646, intron 9 of 22)	15043	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
118391	chr19	35732871	35733780	+	0	NA	exon (NM_014727, exon 28 of 37)	exon (NM_014727, exon 28 of 37)	9127	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
226998	chr9	83656871	83657230	+	0	NA	Intergenic	L2a|LINE|L2	33907	NR_046422	414328		NM_001001551	ENSG00000148057	IDNK	C9orf103|bA522I20.2|hGntK	IDNK gluconokinase	protein-coding
200518	chr6	136037621	136038080	+	0	NA	intron (NM_018945, intron 2 of 12)	intron (NM_018945, intron 2 of 12)	34977	NR_149042	644135		NR_149042	ENSG00000237596	PDE7B-AS1	-	PDE7B antisense RNA 1	ncRNA
116889	chr19	18688151	18688250	+	0	NA	intron (NM_015321, intron 1 of 13)	L2a|LINE|L2	4520	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
52977	chr12	57482171	57482530	+	0	NA	intron (NM_001319850, intron 2 of 20)	AluY|SINE|Alu	-2484	NM_032496	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
73818	chr15	48962151	48962450	+	0	NA	intron (NM_203349, intron 1 of 11)	intron (NM_203349, intron 1 of 11)	1619	NM_203349	399694		NM_203349	ENSG00000185634	SHC4	RaLP|SHCD	SHC adaptor protein 4	protein-coding
22689	chr1	223841771	223842200	+	0	NA	intron (NM_001031685, intron 1 of 17)	AluSg|SINE|Alu	3962	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
42706	chr11	72671801	72672200	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	2422	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
91958	chr17	7385421	7385680	+	0	NA	intron (NM_001251902, intron 7 of 12).2	MIR|SINE|MIR	4461	NM_003985	8711		NM_003985	ENSG00000174292	TNK1	KOS1	tyrosine kinase non receptor 1	protein-coding
79290	chr16	540951	541250	+	0	NA	intron (NM_005632, intron 3 of 13)	intron (NM_005632, intron 3 of 13)	-2177	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
210971	chr7	101742921	101744250	+	0	NA	Intergenic	CpG	-72422	NM_181500	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
129655	chr2	70242551	70243080	+	0	NA	intron (NR_147217, intron 1 of 12)	MER1B|DNA|hAT-Charlie	5813	NM_022037	7072		NM_022037	ENSG00000116001	TIA1	ALS26|TIA-1|WDM	TIA1 cytotoxic granule associated RNA binding protein	protein-coding
24752	chr1	248816251	248816650	+	0	NA	intron (NM_001322462, intron 5 of 8)	MIR3|SINE|MIR	8916	NM_001322463	80851		NM_030645	ENSG00000175137	SH3BP5L	-	SH3 binding domain protein 5 like	protein-coding
230923	chr9	129336271	129338000	+	0	NA	intron (NR_120686, intron 1 of 3)	CpG	212	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
178047	chr4	139656801	139657280	+	0	NA	Intergenic	Intergenic	-8728	NM_001204367	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
141380	chr2	240704551	240705530	+	0	NA	Intergenic	L1MCb|LINE|L1	13174	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
28287	chr10	46032151	46032250	+	0	NA	Intergenic	Intergenic	-1486	NM_001145261	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
7023	chr1	31918221	31918480	+	0	NA	intron (NM_001369859, intron 3 of 6)	intron (NM_001369859, intron 3 of 6)	19468	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
6767	chr1	30745931	30747000	+	0	NA	intron (NM_006762, intron 1 of 7)	intron (NM_006762, intron 1 of 7)	-7233	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
205956	chr7	26151751	26153700	+	0	NA	exon (NM_004289, exon 1 of 4)	exon (NM_004289, exon 1 of 4)	527	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
182010	chr5	55326671	55326830	+	0	NA	intron (NM_015360, intron 3 of 26)	L1PA7|LINE|L1	18761	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
154733	chr22	36467771	36468130	+	0	NA	intron (NM_012473, intron 3 of 3)	intron (NM_012473, intron 3 of 3)	13690	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
96214	chr17	39769671	39770880	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	7950	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
179751	chr5	250221	250850	+	0	NA	intron (NM_001330758, intron 11 of 12)	intron (NM_001330758, intron 11 of 12)	20989	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
47365	chr12	2291271	2291430	+	0	NA	intron (NM_199460, intron 3 of 49)	intron (NM_199460, intron 3 of 49)	21574	NR_046769	100874370		NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
53992	chr12	75337971	75338150	+	0	NA	intron (NM_001304964, intron 1 of 5)	L1MD2|LINE|L1	3390	NM_152779	256710		NM_152779	ENSG00000173401	GLIPR1L1	ALKN2972|PRO7434	GLIPR1 like 1	protein-coding
127758	chr2	43995251	43996800	+	0	NA	promoter-TSS (NM_133259)	promoter-TSS (NM_133259)	-36	NM_133259	10128		NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC|MC4DN5	leucine rich pentatricopeptide repeat containing	protein-coding
101431	chr17	67420771	67421200	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	43704	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
53823	chr12	69330731	69331930	+	0	NA	Intergenic	HERVK22-int|LTR|ERVK	-17051	NM_000239	4069		NM_000239	ENSG00000090382	LYZ	LYZF1|LZM	lysozyme	protein-coding
220773	chr8	102413871	102414030	+	0	NA	intron (NR_168428, intron 1 of 4)	AluSx|SINE|Alu	-1250	NM_015902	51366		NM_015902	ENSG00000104517	UBR5	DD5|EDD|EDD1|HYD	ubiquitin protein ligase E3 component n-recognin 5	protein-coding
74377	chr15	58839571	58839730	+	0	NA	intron (NM_001040450, intron 6 of 8)	intron (NM_001040450, intron 6 of 8)	68348	NM_001040450	54629		NM_019092	ENSG00000128923	MINDY2	FAM63B	MINDY lysine 48 deubiquitinase 2	protein-coding
126148	chr2	26187071	26187230	+	0	NA	intron (NM_001168241, intron 5 of 5)	intron (NM_001168241, intron 5 of 5)	6434	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
109098	chr18	79969351	79969450	+	0	NA	intron (NM_001136180, intron 3 of 3)	intron (NM_001136180, intron 3 of 3)	4757	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
88621	chr16	85618151	85618850	+	0	NA	intron (NM_001278184, intron 1 of 14)	MIR|SINE|MIR	5178	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
119864	chr19	41441771	41442130	+	0	NA	Intergenic	AluSx|SINE|Alu	-1206	NM_001130514	100170765		NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
2206	chr1	8671071	8671500	+	0	NA	intron (NM_001042681, intron 1 of 22)	Charlie17|DNA|hAT-Charlie	146355	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
217672	chr8	30103401	30104600	+	0	NA	intron (NM_015344, intron 2 of 3)	L1MD2|LINE|L1	8592	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
153253	chr22	24068821	24069280	+	0	NA	intron (NM_012295, intron 16 of 36)	intron (NM_012295, intron 16 of 36)	57680	NM_001199281	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
85550	chr16	53220601	53220830	+	0	NA	intron (NM_001352127, intron 3 of 38)	intron (NM_001352127, intron 3 of 38)	12264	NM_001382355	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
99343	chr17	49858401	49858800	+	0	NA	Intergenic	Intergenic	-10583	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
66469	chr14	61561471	61562180	+	0	NA	non-coding (NR_110416, exon 4 of 5)	non-coding (NR_110416, exon 4 of 5)	8369	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
94756	chr17	30815771	30815930	+	0	NA	intron (NM_015986, intron 1 of 7)	intron (NM_015986, intron 1 of 7)	8842	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
47390	chr12	2792471	2793330	+	0	NA	intron (NR_146317, intron 2 of 3)	MIRb|SINE|MIR	-2070	NM_002014	2288		NM_002014	ENSG00000004478	FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	FKBP prolyl isomerase 4	protein-coding
141234	chr2	239609521	239610180	+	0	NA	Intergenic	Intergenic	-153010	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
195550	chr6	37480071	37480480	+	0	NA	3' UTR (NM_015050, exon 24 of 24)	3' UTR (NM_015050, exon 24 of 24)	19618	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
206005	chr7	26208821	26209080	+	0	NA	intron (NM_016587, intron 4 of 5)	(T)n|Simple_repeat|Simple_repeat	7205	NM_016587	11335		NM_007276	ENSG00000122565	CBX3	HECH|HP1-GAMMA|HP1Hs-gamma|HP1gamma	chromobox 3	protein-coding
17766	chr1	159041121	159041600	+	0	NA	intron (NM_001376592, intron 7 of 9)	LTR82A|LTR|ERVL	31453	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
45045	chr11	117043101	117043830	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	54963	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
13564	chr1	115839421	115839680	+	0	NA	intron (NM_005599, intron 2 of 2)	CpG	1153	NM_001111061	4808		NM_005599	ENSG00000177551	NHLH2	HEN2|HH27|NSCL2|bHLHa34	nescient helix-loop-helix 2	protein-coding
64386	chr14	24150721	24150980	+	0	NA	exon (NM_017999, exon 8 of 21)	exon (NM_017999, exon 8 of 21)	3352	NM_017999	55072		NM_017999	ENSG00000092098	RNF31	HOIP|IMD115|Paul|ZIBRA	ring finger protein 31	protein-coding
54387	chr12	89878651	89879430	+	0	NA	Intergenic	Intergenic	-68653	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
184281	chr5	96794421	96795150	+	0	NA	intron (NM_001349244, intron 5 of 19)	intron (NM_001349244, intron 5 of 19)	13160	NM_001040458	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
127570	chr2	42568051	42569450	+	0	NA	exon (NM_001330443, exon 1 of 17)	exon (NM_001330443, exon 1 of 17)	118	NM_001330443	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
157285	chr22	44192201	44192930	+	0	NA	intron (NM_022141, intron 8 of 13)	intron (NM_022141, intron 8 of 13)	11640	NM_022141	64098		NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding
177692	chr4	121869721	121871130	+	0	NA	promoter-TSS (NM_018190)	promoter-TSS (NM_018190)	49	NM_176824	55212		NM_018190	ENSG00000138686	BBS7	BBS2L1	Bardet-Biedl syndrome 7	protein-coding
121158	chr19	46373851	46374150	+	0	NA	intron (NM_001204284, intron 2 of 11)	intron (NM_001204284, intron 2 of 11)	26913	NM_001204284	5536		NM_006247	ENSG00000011485	PPP5C	PP5|PPP5|PPT	protein phosphatase 5 catalytic subunit	protein-coding
9659	chr1	52636601	52639200	+	0	NA	intron (NR_135157, intron 1 of 4)	L3|LINE|CR1	4732	NR_135157	348378		NM_001042693	ENSG00000182183	SHISAL2A	FAM159A|PRO7171|WWLS2783	shisa like 2A	protein-coding
162922	chr3	49427071	49427230	+	0	NA	intron (NM_032316, intron 1 of 5)	AluYm1|SINE|Alu	2174	NM_032316	84276		NM_032316	ENSG00000145029	NICN1	-	nicolin 1, tubulin polyglutamylase complex subunit	protein-coding
214842	chr7	151302271	151302680	+	0	NA	Intergenic	Intergenic	-25326	NM_003078	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
41798	chr11	66864551	66865130	+	0	NA	intron (NM_022172, intron 9 of 20)	intron (NM_022172, intron 9 of 20)	7776	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
143446	chr20	30301001	30301200	+	0	NA	Intergenic	L2c|LINE|L2	-14563	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
206884	chr7	37685021	37685480	+	0	NA	5' UTR (NM_181791, exon 2 of 4)	5' UTR (NM_181791, exon 2 of 4)	1484	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
40096	chr11	62796901	62797430	+	0	NA	intron (NM_006362, intron 13 of 20)	intron (NM_006362, intron 13 of 20)	-4394	NR_106769	102465257		NR_106769	ENSG00000274066	MIR6514	hsa-mir-6514|mir-6514	microRNA 6514	ncRNA
73948	chr15	51730701	51730900	+	0	NA	intron (NM_001143917, intron 1 of 2)	intron (NM_001143917, intron 1 of 2)	6262	NM_001363969	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
175382	chr4	70692871	70693030	+	0	NA	Intergenic	Intergenic	4418	NM_020368	57050		NM_020368	ENSG00000132467	UTP3	CRL1|CRLZ1|SAS10	UTP3 small subunit processome component	protein-coding
204926	chr7	6179671	6180030	+	0	NA	intron (NM_004227, intron 4 of 12)	(AC)n|Simple_repeat|Simple_repeat	-7713	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
195778	chr6	40482471	40482830	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	104313	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
10652	chr1	70353821	70355780	+	0	NA	promoter-TSS (NR_168347)	promoter-TSS (NR_168347)	-11	NR_168347	11147		NM_007071	ENSG00000197568	ANKRD13C-DT	HHLA3	ANKRD13C divergent transcript	ncRNA
203873	chr7	1472701	1473150	+	0	NA	intron (NM_001080453, intron 43 of 47)	intron (NM_001080453, intron 43 of 47)	-13455	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
183548	chr5	80111101	80111300	+	0	NA	TTS (NR_126061)	TTS (NR_126061)	-27535	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
136813	chr2	181810871	181811030	+	0	NA	Intergenic	Intergenic	-80780	NM_001287504	6744		NM_006751	ENSG00000138434	ITPRID2	CS-1|CS1|KRAP|SPAG13|SSFA2	ITPR interacting domain containing 2	protein-coding
165612	chr3	101683501	101684100	+	0	NA	intron (NM_000986, intron 3 of 5)	AluSx1|SINE|Alu	2918	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
122123	chr19	48814701	48815350	+	0	NA	intron (NM_016246, intron 6 of 8)	intron (NM_016246, intron 6 of 8)	-3996	NM_001190	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
67980	chr14	74906871	74907830	+	0	NA	3' UTR (NM_001370253, exon 11 of 11)	3' UTR (NM_001370253, exon 11 of 11)	15092	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
79805	chr16	1404651	1405150	+	0	NA	intron (NM_001372107, intron 2 of 14)	intron (NM_001372107, intron 2 of 14)	9804	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
185894	chr5	132753001	132753200	+	0	NA	3' UTR (NM_001287253, exon 6 of 6)	3' UTR (NM_001287253, exon 6 of 6)	5655	NM_001287252	645121		NM_001039780	ENSG00000205089	CCNI2	-	cyclin I family member 2	protein-coding
79491	chr16	778001	778200	+	0	NA	Intergenic	Intergenic	7917	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
45454	chr11	118485371	118485530	+	0	NA	intron (NM_001197104, intron 10 of 35)	L1ME4a|LINE|L1	-42024	NM_001346097	143941		NM_001080441	ENSG00000172425	TTC36	HBP21	tetratricopeptide repeat domain 36	protein-coding
3636	chr1	16385351	16386130	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	18498	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
8187	chr1	39567151	39567600	+	0	NA	TTS (NR_002983)	TTS (NR_002983)	135	NR_002983	677834		NR_002983	ENSG00000201457	SNORA55	ACA55	small nucleolar RNA, H/ACA box 55	snoRNA
226862	chr9	78034851	78035730	+	0	NA	Intergenic	Intergenic	-3479	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
78638	chr15	94259121	94259380	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	27689	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
184000	chr5	90558451	90559000	+	0	NA	promoter-TSS (NM_032119)	promoter-TSS (NM_032119)	-72	NR_003149	84059		NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
192875	chr6	27465271	27465430	+	0	NA	intron (NM_001318893, intron 3 of 5)	AluY|SINE|Alu	7548	NM_001318892	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
73771	chr15	45586421	45588400	+	0	NA	promoter-TSS (NM_012388)	promoter-TSS (NM_012388)	31	NM_012388	26258		NM_012388	ENSG00000104164	BLOC1S6	BLOS6|HPS9|PA|PALLID|PLDN	biogenesis of lysosomal organelles complex 1 subunit 6	protein-coding
44996	chr11	116984651	116984750	+	0	NA	intron (NM_001281748, intron 1 of 24)	(AC)n|Simple_repeat|Simple_repeat	113728	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
62976	chr13	112295971	112296800	+	0	NA	Intergenic	Intergenic	-17082	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
181680	chr5	50458221	50458850	+	0	NA	Intergenic	L1PA3|LINE|L1	-17247	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
192340	chr6	24355301	24355700	+	0	NA	intron (NM_001195610, intron 2 of 10)	MIRc|SINE|MIR	-1403	NM_181337	353219		NM_181337	ENSG00000146049	KAAG1	RU2AS	kidney associated DCDC2 antisense RNA 1	ncRNA
139867	chr2	230616771	230616930	+	0	NA	Intergenic	AluSx|SINE|Alu	83679	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
209869	chr7	90427521	90428050	+	0	NA	Intergenic	Intergenic	24324	NM_001185073	9069		NM_012129	ENSG00000157224	CLDN12	-	claudin 12	protein-coding
170991	chr3	194644701	194644900	+	0	NA	intron (NM_018385, intron 12 of 13)	intron (NM_018385, intron 12 of 13)	-11381	NM_138399	93109		NM_138399	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
194520	chr6	33298701	33300780	+	0	NA	promoter-TSS (NM_001243738)	promoter-TSS (NM_001243738)	-352	NM_001243738	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
89376	chr16	88793451	88793980	+	0	NA	Intergenic	Intergenic	-8495	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
188610	chr5	157195001	157195300	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	14310	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
147005	chr20	53572471	53573250	+	0	NA	intron (NR_110051, intron 5 of 5)	intron (NR_110051, intron 5 of 5)	20090	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
86358	chr16	66525901	66526300	+	0	NA	intron (NR_073520, intron 5 of 8)	intron (NR_073520, intron 5 of 8)	24022	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
72987	chr15	40596071	40596400	+	0	NA	intron (NM_144508, intron 1 of 25)	MER119|DNA|hAT-Charlie	1986	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
236585	chrX	73127671	73128050	+	0	NA	non-coding (NR_027291, exon 1 of 1)	non-coding (NR_027291, exon 1 of 1)	220	NR_027291	645996		NR_027291	ENSG00000293034	NAP1L6P	NAP1L6|lncNAP1L6	nucleosome assembly protein 1 like 6, pseudogene	pseudo
33120	chr10	112139971	112140500	+	0	NA	Intergenic	Intergenic	43530	NM_020918	57678		NM_020918	ENSG00000119927	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
151835	chr22	18509871	18510250	+	0	NA	Intergenic	Intergenic	8101	NM_001355479	728226		NM_001355479	ENSG00000274252	GGTLC3	GGT	gamma-glutamyltransferase light chain family member 3	protein-coding
123414	chr19	54037051	54037150	+	0	NA	Intergenic	LTR13A|LTR|ERVK	26797	NM_001288791	284415		NM_198481	ENSG00000189068	VSTM1	SIRL-1|SIRL1|UNQ3033	V-set and transmembrane domain containing 1	protein-coding
168258	chr3	141421501	141422100	+	0	NA	intron (NM_001376186, intron 3 of 3)	intron (NM_001376186, intron 3 of 3)	18786	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
45232	chr11	117952581	117953700	+	0	NA	Intergenic	Intergenic	-23687	NM_001206790	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
181569	chr5	43189201	43189800	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2725	NM_153361	167359		NM_153361	ENSG00000177453	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
172647	chr4	2572201	2572630	+	0	NA	intron (NM_001366318, intron 1 of 20)	intron (NM_001366318, intron 1 of 20)	35768	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
15704	chr1	151003121	151003950	+	0	NA	intron (NM_001376670, intron 1 of 8)	intron (NM_001376670, intron 1 of 8)	3367	NM_001040217	55793		NM_018379	ENSG00000143409	MINDY1	FAM63A|MINDY-1	MINDY lysine 48 deubiquitinase 1	protein-coding
217395	chr8	28346301	28346500	+	0	NA	3' UTR (NM_018660, exon 10 of 10)	3' UTR (NM_018660, exon 10 of 10)	7753	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
174670	chr4	41863551	41863900	+	0	NA	Intergenic	Intergenic	18886	NR_104143	101927074		NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA
186338	chr5	134739201	134740830	+	0	NA	intron (NM_001745, intron 1 of 3)	AluJo|SINE|Alu	1467	NM_001745	819		NM_001745	ENSG00000164615	CAMLG	CAML|CDG2Z|GET2	calcium modulating ligand	protein-coding
124592	chr2	861821	862280	+	0	NA	intron (NR_033880, intron 1 of 3)	intron (NR_033880, intron 1 of 3)	6376	NR_111963	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
209735	chr7	87184651	87185350	+	0	NA	intron (NR_024550, intron 11 of 17)	LFSINE_Vert|SINE|tRNA	32446	NM_021145	9988		NM_021145	ENSG00000135164	DMTF1	DMP1|DMTF|MRUL|hDMP1	cyclin D binding myb like transcription factor 1	protein-coding
190879	chr6	2353871	2354050	+	0	NA	intron (NR_046229, intron 4 of 6)	intron (NR_046229, intron 4 of 6)	108207	NR_046229	100508120		NR_046229	ENSG00000250903	GMDS-DT	GMDS-AS1	GMDS divergent transcript	ncRNA
215418	chr7	157615471	157616030	+	0	NA	intron (NM_130842, intron 14 of 21)	intron (NM_130842, intron 14 of 21)	-41328	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
151769	chr22	17998771	17999130	+	0	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-17989	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
93897	chr17	21244671	21244830	+	0	NA	intron (NM_152914, intron 1 of 2)	intron (NM_152914, intron 1 of 2)	8660	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
141499	chr2	241122871	241123030	+	0	NA	intron (NM_001252124, intron 11 of 13)	intron (NM_001252124, intron 11 of 13)	-20618	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
205852	chr7	24923301	24923900	+	0	NA	intron (NM_015550, intron 1 of 22)	MLT1O|LTR|ERVL-MaLR	-30979	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
7145	chr1	32212151	32212600	+	0	NA	intron (NM_001099434, intron 4 of 8)	intron (NM_001099434, intron 4 of 8)	3281	NM_001099434	149069		NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
39984	chr11	62616221	62617280	+	0	NA	exon (NM_012200, exon 4 of 5)	exon (NM_012200, exon 4 of 5)	3493	NM_000327	6094		NM_000327	ENSG00000149489	ROM1	ROM|ROSP1|RP7|TSPAN23	retinal outer segment membrane protein 1	protein-coding
27880	chr10	41866851	41867700	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	500770	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
86196	chr16	57991521	57991980	+	0	NA	Intergenic	Intergenic	-7853	NM_001330568	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
90489	chr17	1427021	1427500	+	0	NA	intron (NM_005206, intron 2 of 2)	AluJo|SINE|Alu	-26998	NR_024058	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
48474	chr12	9769501	9769700	+	0	NA	Intergenic	L1MEb|LINE|L1	-8699	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
176354	chr4	88454721	88455230	+	0	NA	Intergenic	LTR45|LTR|ERV1	-2144	NM_016323	51191		NM_016323	ENSG00000138646	HERC5	CEB1|CEBP1	HECT and RLD domain containing E3 ubiquitin protein ligase 5	protein-coding
223430	chr8	143956671	143957530	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	-3266	NM_201379	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
152106	chr22	19887971	19888130	+	0	NA	intron (NR_147957, intron 10 of 16)	intron (NR_147957, intron 10 of 16)	-33176	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
183989	chr5	90265351	90265450	+	0	NA	intron (NR_120601, intron 1 of 5)	intron (NR_120601, intron 1 of 5)	24671	NR_120601	101929495		NR_120601	ENSG00000248555	LINC01339	-	long intergenic non-protein coding RNA 1339	ncRNA
194377	chr6	32982801	32983800	+	0	NA	Intergenic	Intergenic	10216	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
38169	chr11	36306901	36307300	+	0	NA	intron (NM_001160167, intron 1 of 8)	intron (NM_001160167, intron 1 of 8)	10812	NM_001160167	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
211403	chr7	105031401	105032550	+	0	NA	intron (NM_182931, intron 1 of 26)	AluSz|SINE|Alu	17770	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
239109	chrY	11214701	11215150	+	0	NA	Intergenic	CpG	1206665	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
109107	chr18	79990051	79990350	+	0	NA	intron (NM_001305564, intron 1 of 2)	intron (NM_001305564, intron 1 of 2)	-1637	NM_001305557	10907		NM_006701	ENSG00000141759	TXNL4A	BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD	thioredoxin like 4A	protein-coding
132452	chr2	105859101	105859730	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	7568	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
22876	chr1	225781501	225781700	+	0	NA	intron (NM_001130440, intron 1 of 3)	AluSq|SINE|Alu	3774	NM_003133	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
215685	chr8	783501	783700	+	0	NA	intron (NM_001346810, intron 1 of 14)	Charlie2a|DNA|hAT-Charlie	45052	NR_134292	401442		NR_134292	ENSG00000282375	LOC401442	-	uncharacterized LOC401442	ncRNA
52125	chr12	54202851	54203300	+	0	NA	Intergenic	AluY|SINE|Alu	-14081	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
158667	chr3	5124551	5124850	+	0	NA	intron (NM_018184, intron 1 of 6)	AluJr|SINE|Alu	2408	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
31013	chr10	88791971	88792130	+	0	NA	Intergenic	Intergenic	-10680	NM_001128215	340654		NM_001128215	ENSG00000173239	LIPM	LIPL3|bA304I5.1	lipase family member M	protein-coding
131091	chr2	89554551	89554650	+	0	NA	intron (NR_160763, intron 3 of 3)	intron (NR_160763, intron 3 of 3)	31065	NR_160761	107985911		NR_160761	ENSG00000290846	LOC107985911	-	lymphocyte specific protein 1 pseudogene	pseudo
127243	chr2	38676971	38677130	+	0	NA	intron (NM_138801, intron 2 of 6)	intron (NM_138801, intron 2 of 6)	10936	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
94548	chr17	29590771	29591300	+	0	NA	Intergenic	Intergenic	-1387	NM_001085454	28964		NM_014030	ENSG00000108262	GIT1	p95-APP1	GIT ArfGAP 1	protein-coding
216086	chr8	10961501	10962100	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	73502	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
56815	chr12	120217751	120218050	+	0	NA	intron (NM_001080855, intron 6 of 11)	intron (NM_001080855, intron 6 of 11)	16609	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
153748	chr22	29329851	29330200	+	0	NA	intron (NM_001378565, intron 19 of 20)	intron (NM_001378565, intron 19 of 20)	3233	NR_003686	100113380		NR_003686	ENSG00000239127	SNORD125	-	small nucleolar RNA, C/D box 125	snoRNA
61427	chr13	51821651	51823180	+	0	NA	intron (NM_001351003, intron 3 of 4)	intron (NM_001351003, intron 3 of 4)	-18252	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
127327	chr2	39068951	39069450	+	0	NA	intron (NM_001382394, intron 1 of 22)	AluJr|SINE|Alu	51851	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
139438	chr2	223727471	223727830	+	0	NA	Intergenic	Intergenic	109932	NM_001039569	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
171271	chr3	195872901	195873100	+	0	NA	intron (NM_005781, intron 9 of 14)	intron (NM_005781, intron 9 of 14)	9395	NR_106887	102465977		NR_106887	ENSG00000276489	MIR6829	hsa-mir-6829	microRNA 6829	ncRNA
199557	chr6	118885701	118885900	+	0	NA	intron (NM_001378357, intron 8 of 13)	L1MB8|LINE|L1	-8352	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
162044	chr3	46702401	46702800	+	0	NA	intron (NM_147196, intron 1 of 3)	intron (NM_147196, intron 1 of 3)	1208	NM_147196	259236		NM_147196	ENSG00000181585	TMIE	DFNB6	transmembrane inner ear	protein-coding
207638	chr7	45034171	45034580	+	0	NA	intron (NM_001029835, intron 1 of 9)	AluSq2|SINE|Alu	6741	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
92872	chr17	16416201	16417400	+	0	NA	intron (NM_016113, intron 1 of 14)	MIR3|SINE|MIR	1229	NM_016113	51393		NM_016113	ENSG00000187688	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel subfamily V member 2	protein-coding
11155	chr1	86912571	86912730	+	0	NA	intron (NR_144513, intron 1 of 4)	MLT1H|LTR|ERVL-MaLR	1476	NM_004261	9403		NM_004261	ENSG00000183291	SELENOF	SEP15	selenoprotein F	protein-coding
46853	chr11	133911271	133911450	+	0	NA	intron (NM_001277285, intron 19 of 19)	intron (NM_001277285, intron 19 of 19)	-12779	NR_039846	100616119		NR_039846	ENSG00000284020	MIR4697	-	microRNA 4697	ncRNA
140107	chr2	231473651	231473750	+	0	NA	Intergenic	AluJo|SINE|Alu	-9216	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
179828	chr5	468251	468650	+	0	NA	Intergenic	Intergenic	4515	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
162450	chr3	48468871	48469700	+	0	NA	3' UTR (NM_001272083, exon 3 of 3)	3' UTR (NM_001272083, exon 3 of 3)	3055	NM_033629	11277		NM_007248	ENSG00000213689	TREX1	AGS1|CRV|DRN3|HERNS|RVCLS	three prime repair exonuclease 1	protein-coding
17992	chr1	160518671	160518830	+	0	NA	intron (NM_001184714, intron 1 of 7)	L1PA10|LINE|L1	4505	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
127821	chr2	44938771	44939250	+	0	NA	promoter-TSS (NR_147194)	promoter-TSS (NR_147194)	-122	NR_147194	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
63484	chr13	114164271	114164430	+	0	NA	Intergenic	Intergenic	-31727	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
17823	chr1	159889901	159890600	+	0	NA	intron (NM_012337, intron 3 of 11)	intron (NM_012337, intron 3 of 11)	9829	NR_130464	100422852		NR_130464	ENSG00000266458	MIR4259	-	microRNA 4259	ncRNA
146591	chr20	50112501	50113980	+	0	NA	promoter-TSS (NM_001257399)	promoter-TSS (NM_001257399)	-42	NM_001282580	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
66963	chr14	65937151	65937250	+	0	NA	Intergenic	Intergenic	466098	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
16589	chr1	155030101	155030300	+	0	NA	exon (NM_144622, exon 7 of 15)	exon (NM_144622, exon 7 of 15)	3581	NM_144622	127579		NM_144622	ENSG00000163354	DCST2	SPE42	DC-STAMP domain containing 2	protein-coding
99012	chr17	48818301	48818700	+	0	NA	Intergenic	Intergenic	-1271	NM_001130918	284076		NM_173623	ENSG00000170703	TTLL6	TTL.6	tubulin tyrosine ligase like 6	protein-coding
165998	chr3	108127251	108127980	+	0	NA	intron (NR_110028, intron 1 of 2)	intron (NR_110028, intron 1 of 2)	1794	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
98597	chr17	47744271	47744430	+	0	NA	exon (NM_013351, exon 4 of 6)	exon (NM_013351, exon 4 of 6)	11114	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
71692	chr15	20193121	20194000	+	0	NA	Intergenic	Intergenic	-89184	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
33731	chr10	122342421	122343080	+	0	NA	Intergenic	Intergenic	-31958	NM_001377247	59338		NM_021622	ENSG00000107679	PLEKHA1	TAPP1	pleckstrin homology domain containing A1	protein-coding
113023	chr19	7928371	7928530	+	0	NA	intron (NM_006351, intron 10 of 12)	intron (NM_006351, intron 10 of 12)	-2315	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
235634	chrX	48473971	48474550	+	0	NA	Intergenic	L2a|LINE|L2	-1761	NM_001282157	24140		NM_012280	ENSG00000068438	FTSJ1	CDLIV|JM23|MRX44|MRX9|SPB1|TRMT7|XLID9	FtsJ RNA 2'-O-methyltransferase 1	protein-coding
182285	chr5	57248271	57248430	+	0	NA	intron (NM_001127235, intron 8 of 11)	intron (NM_001127235, intron 8 of 11)	34276	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
173291	chr4	7070571	7071930	+	0	NA	Intergenic	Intergenic	-3186	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
30344	chr10	77641651	77642030	+	0	NA	Intergenic	Intergenic	-4032	NM_001322836	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
24124	chr1	235767821	235768080	+	0	NA	intron (NM_001301365, intron 20 of 52)	L2|LINE|L2	85110	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
55352	chr12	104125251	104125580	+	0	NA	intron (NM_006166, intron 4 of 7)	AluSq|SINE|Alu	12795	NM_006166	4801		NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	nuclear transcription factor Y subunit beta	protein-coding
104038	chr17	80133031	80133950	+	0	NA	TTS (NM_014740)	TTS (NM_014740)	13638	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
156590	chr22	41532451	41532550	+	0	NA	intron (NM_001018052, intron 2 of 4)	intron (NM_001018052, intron 2 of 4)	11970	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
116510	chr19	18156201	18156400	+	0	NA	intron (NR_162071, intron 2 of 14)	intron (NR_162071, intron 2 of 14)	3137	NR_162071	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
206011	chr7	26289751	26290080	+	0	NA	Intergenic	AluSg|SINE|Alu	-1947	NM_013322	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
149463	chr21	31712221	31712480	+	0	NA	intron (NM_001145444, intron 1 of 18)	AluSz6|SINE|Alu	19768	NM_001145445	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
159793	chr3	16323821	16324080	+	0	NA	non-coding (NR_148219, exon 12 of 12)	non-coding (NR_148219, exon 12 of 12)	58738	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
119713	chr19	41158921	41159430	+	0	NA	Intergenic	MER77|LTR|ERVL	-34044	NM_030622	29785		NM_030622	ENSG00000167600	CYP2S1	CYPIIS1	cytochrome P450 family 2 subfamily S member 1	protein-coding
38678	chr11	46529171	46530080	+	0	NA	intron (NM_001267782, intron 8 of 19)	intron (NM_001267782, intron 8 of 19)	57819	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
53766	chr12	68676271	68676880	+	0	NA	intron (NR_038930, intron 2 of 2)	AluJb|SINE|Alu	10284	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
57564	chr12	122224251	122224550	+	0	NA	intron (NM_001278303, intron 1 of 4)	intron (NM_001278303, intron 1 of 4)	1371	NM_001278304	56616		NM_019887	ENSG00000184047	DIABLO	DFNA64|SMAC	diablo IAP-binding mitochondrial protein	protein-coding
133071	chr2	112427371	112427830	+	0	NA	intron (NM_005054, intron 1 of 22).3	intron (NM_005054, intron 1 of 22).3	6014	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
124747	chr2	6911071	6911430	+	0	NA	Intergenic	Intergenic	-6162	NM_001349181	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
38367	chr11	44614371	44614530	+	0	NA	intron (NM_002231, intron 6 of 9)	intron (NM_002231, intron 6 of 9)	48787	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
25464	chr10	6646521	6646780	+	0	NA	Intergenic	Intergenic	11580	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
69304	chr14	93117551	93117650	+	0	NA	Intergenic	AluY|SINE|Alu	-1675	NM_014216	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
17781	chr1	159177301	159177600	+	0	NA	intron (NM_001346510, intron 1 of 8)	intron (NM_001346510, intron 1 of 8)	5835	NM_001127173	57863		NM_021189	ENSG00000162706	CADM3	BIgR|CMT2FF|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3	cell adhesion molecule 3	protein-coding
129911	chr2	73259001	73259200	+	0	NA	intron (NM_001371389, intron 12 of 12)	intron (NM_001371389, intron 12 of 12)	24792	NM_006429	10574		NM_006429	ENSG00000135624	CCT7	CCTETA|CCTH|NIP7-1|TCP1ETA	chaperonin containing TCP1 subunit 7	protein-coding
48732	chr12	10712021	10712480	+	0	NA	intron (NM_003651, intron 5 of 9)	intron (NM_003651, intron 5 of 9)	11073	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
177918	chr4	131724271	131724430	+	0	NA	Intergenic	SST1|Satellite|centr	-40488	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
64361	chr14	24113781	24115930	+	0	NA	promoter-TSS (NM_001354770)	promoter-TSS (NM_001354770)	78	NR_028099	80344		NM_025230	ENSG00000100897	DCAF11	GL014|PRO2389|WDR23	DDB1 and CUL4 associated factor 11	protein-coding
40326	chr11	63913471	63913630	+	0	NA	intron (NM_173587, intron 8 of 11)	AluSx|SINE|Alu	3614	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
29016	chr10	63573271	63573630	+	0	NA	intron (NM_001001330, intron 2 of 7)	intron (NM_001001330, intron 2 of 7)	-51560	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
237290	chrX	113343271	113343430	+	0	NA	intron (NR_110399, intron 3 of 3)	L1PA2|LINE|L1	300623	NR_110399	101928437		NR_110399		LOC101928437	-	uncharacterized LOC101928437	ncRNA
174124	chr4	36219971	36220430	+	0	NA	intron (NR_146894, intron 2 of 32)	MIR|SINE|MIR	23739	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
213344	chr7	135555601	135556000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2117	NM_001329434	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
143479	chr20	31062371	31062530	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-195214	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
158305	chr22	50404401	50404600	+	0	NA	intron (NM_001351648, intron 3 of 22)	AluJb|SINE|Alu	-2942	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
119614	chr19	40767871	40768500	+	0	NA	Intergenic	AluSg|SINE|Alu	-6975	NM_001202553	8190		NM_006533	ENSG00000261857	MIA	CD-RAP|MIA1	MIA SH3 domain containing	protein-coding
146417	chr20	49534221	49535500	+	0	NA	intron (NM_000961, intron 5 of 9)	AluJb|SINE|Alu	33277	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
159694	chr3	15591521	15591780	+	0	NA	exon (NM_012260, exon 4 of 17)	exon (NM_012260, exon 4 of 17)	-9702	NM_001281723	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
116767	chr19	18498251	18498350	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	23770	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
10725	chr1	75796401	75797330	+	0	NA	promoter-TSS (NM_002440)	promoter-TSS (NM_002440)	-17	NM_002440	4438		NM_002440	ENSG00000057468	MSH4	ASG|POF20|SPGF2	mutS homolog 4	protein-coding
117483	chr19	19788901	19789350	+	0	NA	intron (NM_001355194, intron 1 of 2)	intron (NM_001355194, intron 1 of 2)	12551	NM_001355194	7608		NM_001355194	ENSG00000291177	ZNF56P	ZNF56|ZNF742	zinc finger protein 56, pseudogene	pseudo
82904	chr16	21639871	21640030	+	0	NA	3' UTR (NM_005849, exon 6 of 6).2	3' UTR (NM_005849, exon 6 of 6).2	12658	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
100463	chr17	61407271	61407630	+	0	NA	intron (NM_005994, intron 6 of 6)	intron (NM_005994, intron 6 of 6)	-4301	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
235733	chrX	48924051	48924680	+	0	NA	intron (NM_001136157, intron 6 of 8)	L2a|LINE|L2	-5341	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
80619	chr16	2971321	2972450	+	0	NA	TTS (NM_001258451)	TTS (NM_001258451)	2537	NM_001284511	124222		NM_152341	ENSG00000162073	PAQR4	-	progestin and adipoQ receptor family member 4	protein-coding
194871	chr6	34583451	34583550	+	0	NA	Intergenic	Intergenic	-27167	NM_001252294	25803		NM_012391	ENSG00000124664	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding
73251	chr15	41809851	41810200	+	0	NA	intron (NM_014994, intron 3 of 30)	intron (NM_014994, intron 3 of 30)	-18060	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
205780	chr7	23546451	23547400	+	0	NA	Intergenic	(TTGTTT)n|Simple_repeat|Simple_repeat	-14884	NM_001282757	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
174999	chr4	51840621	51840880	+	0	NA	Intergenic	Intergenic	-2250	NM_015115	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
187106	chr5	140372851	140373330	+	0	NA	intron (NM_031467, intron 21 of 21)	intron (NM_031467, intron 21 of 21)	12896	NM_001258426	83697		NM_031467	ENSG00000113073	SLC4A9	AE4	solute carrier family 4 member 9	protein-coding
85089	chr16	33059671	33059830	+	0	NA	Intergenic	CpG	-134512	NM_016212	24150		NM_015369	ENSG00000183632	TP53TG3	P53TG3|TP53TG3A|TP53TG3E|TP53TG3F	TP53 target 3	protein-coding
81081	chr16	4342851	4343580	+	0	NA	exon (NM_001201479, exon 28 of 31)	exon (NM_001201479, exon 28 of 31)	8106	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
37300	chr11	14743671	14744030	+	0	NA	intron (NM_001363569, intron 1 of 15)	L1PA3|LINE|L1	100046	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
14834	chr1	146326951	146327250	+	0	NA	Intergenic	LTR33|LTR|ERVL	17807	NM_001368128	105371242		NM_001368128	ENSG00000270339	PPIAL4H	-	peptidylprolyl isomerase A like 4H	protein-coding
325	chr1	982851	983400	+	0	NA	Intergenic	L1M5|LINE|L1	-1032	NM_001291366	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
108595	chr18	75219601	75220000	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	9003	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
10917	chr1	83998571	83999520	+	0	NA	promoter-TSS (NM_001350214)	promoter-TSS (NM_001350214)	87	NM_001350214	79739		NM_024686	ENSG00000137941	TTLL7	-	tubulin tyrosine ligase like 7	protein-coding
1049	chr1	1890501	1892930	+	0	NA	promoter-TSS (NM_002074)	promoter-TSS (NM_002074)	535	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
132920	chr2	111423221	111423480	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	71811	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
84243	chr16	30001971	30002130	+	0	NA	intron (NR_130787, intron 6 of 6)	L2a|LINE|L2	5809	NR_130787	283899		NM_173618	ENSG00000169592	INO80E	CCDC95	INO80 complex subunit E	protein-coding
19430	chr1	174238771	174238930	+	0	NA	intron (NM_001366447, intron 4 of 20)	L1PA2|LINE|L1	-36250	NM_001366449	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
65507	chr14	51892421	51892900	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	25911	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
125348	chr2	10880271	10881030	+	0	NA	intron (NR_110575, intron 1 of 1)	intron (NR_110575, intron 1 of 1)	2383	NR_110575	101929733		NR_110575	ENSG00000271952	LINC01954	-	long intergenic non-protein coding RNA 1954	ncRNA
139361	chr2	221420021	221420680	+	0	NA	3' UTR (NM_001304537, exon 17 of 17)	3' UTR (NM_001304537, exon 17 of 17)	151954	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
219630	chr8	80140801	80141230	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	30106	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
753	chr1	1498401	1498600	+	0	NA	TTS (NM_001317238)	TTS (NM_001317238)	-13662	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
27133	chr10	28250801	28251230	+	0	NA	intron (NM_001318170, intron 1 of 16)	intron (NM_001318170, intron 1 of 16)	31108	NM_173496	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
119136	chr19	39373251	39373550	+	0	NA	intron (NM_001384588, intron 5 of 13)	L2b|LINE|L2	17706	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
18204	chr1	160929671	160929830	+	0	NA	Intergenic	L2a|LINE|L2	-2715	NR_110695	101928372		NR_110695	ENSG00000198358	LOC101928372	-	uncharacterized LOC101928372	ncRNA
58372	chr12	131773721	131774180	+	0	NA	intron (NM_001261411, intron 13 of 18)	intron (NM_001261411, intron 13 of 18)	-54443	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
70195	chr14	100543721	100544630	+	0	NA	intron (NR_169571, intron 5 of 7)	MIRb|SINE|MIR	3952	NM_001385103	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
201893	chr6	151014351	151014950	+	0	NA	intron (NM_015440, intron 22 of 27)	intron (NM_015440, intron 22 of 27)	7642	NM_001350490	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
234272	chrX	13398651	13398750	+	0	NA	Intergenic	Intergenic	63459	NR_045260	100133123		NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA
122770	chr19	50147351	50148370	+	0	NA	Intergenic	MIRb|SINE|MIR	-7540	NR_024243	100170227		NR_024243		SNAR-D	-	small NF90 (ILF3) associated RNA D	snRNA
96154	chr17	39681471	39681630	+	0	NA	intron (NM_001291726, intron 2 of 6)	AluSp|SINE|Alu	6507	NM_033419	93210		NM_033419	ENSG00000161395	PGAP3	AGLA546|CAB2|PERLD1|PP1498|hCOS16	post-GPI attachment to proteins phospholipase 3	protein-coding
138894	chr2	217805401	217805630	+	0	NA	intron (NM_022648, intron 32 of 32)	(AC)n|Simple_repeat|Simple_repeat	28218	NR_145792	109623482		NR_145792		SNORA115	-	small nucleolar RNA, H/ACA box 115	snoRNA
91440	chr17	4745221	4745830	+	0	NA	intron (NM_032265, intron 12 of 12)	intron (NM_032265, intron 12 of 12)	5510	NM_032265	84225		NM_032265	ENSG00000141497	ZMYND15	SPGF14	zinc finger MYND-type containing 15	protein-coding
58901	chr13	19635501	19636230	+	0	NA	intron (NM_017520, intron 1 of 13)	THE1D|LTR|ERVL-MaLR	2206	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
165966	chr3	107954851	107955150	+	0	NA	Intergenic	MER65A|LTR|ERV1	71795	NR_015394	285205		NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
189593	chr5	175655651	175655950	+	0	NA	Intergenic	Intergenic	-2271	NR_160284	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
35658	chr11	1862571	1863030	+	0	NA	intron (NM_002339, intron 1 of 10)	intron (NM_002339, intron 1 of 10)	-2365	NM_001242932	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
186790	chr5	139365221	139365480	+	0	NA	intron (NM_001033112, intron 3 of 3)	AluSx|SINE|Alu	17947	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
32796	chr10	108315551	108315850	+	0	NA	Intergenic	L1HS|LINE|L1	-246407	NR_125760	103695365		NR_125760	ENSG00000229981	LINC01435	TCONS_00018040	long intergenic non-protein coding RNA 1435	ncRNA
180289	chr5	2038401	2038950	+	0	NA	Intergenic	CpG	151344	NR_109912	101929081		NR_109912	ENSG00000249326	CTD-2194D22.4	-	uncharacterized LOC101929081	ncRNA
70160	chr14	100303921	100304280	+	0	NA	intron (NM_001352821, intron 1 of 4)	intron (NM_001352821, intron 1 of 4)	2344	NM_001291814	123096		NM_152333	ENSG00000197119	SLC25A29	C14orf69|CACL|ORNT3	solute carrier family 25 member 29	protein-coding
97505	chr17	43909701	43910520	+	0	NA	promoter-TSS (NM_001278371)	promoter-TSS (NM_001278371)	-399	NM_001278370	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
8566	chr1	41360551	41362710	+	0	NA	5' UTR (NM_001291281, exon 1 of 3)	5' UTR (NM_001291281, exon 1 of 3)	196	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
14017	chr1	120726251	120727030	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	2701	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
186461	chr5	137778921	137779280	+	0	NA	Intergenic	L1PB4|LINE|L1	-22093	NR_002713	4888		NR_002713	ENSG00000293504	NPY6R	NPY1RL|NPY6RP|PP2|Y2B	neuropeptide Y receptor Y6 (pseudogene)	pseudo
190846	chr6	1613801	1614280	+	0	NA	TTS (NM_001453)	TTS (NM_001453)	4125	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
216534	chr8	21043121	21043730	+	0	NA	Intergenic	Intergenic	69439	NR_033894	286114		NR_033894	ENSG00000253199	LINC02153	-	long intergenic non-protein coding RNA 2153	ncRNA
70408	chr14	102007751	102008050	+	0	NA	intron (NM_001376, intron 28 of 77)	MLT1B|LTR|ERVL-MaLR	43327	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
235116	chrX	40716121	40716530	+	0	NA	intron (NM_004229, intron 3 of 30)	AluJo|SINE|Alu	19217	NM_004229	9282		NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
106300	chr18	12857251	12857950	+	0	NA	intron (NM_080422, intron 2 of 9)	intron (NM_080422, intron 2 of 9)	-16638	NM_001308287	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
26863	chr10	24901771	24902230	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	50606	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
54189	chr12	79814551	79815050	+	0	NA	intron (NM_001143885, intron 10 of 25)	AluSq2|SINE|Alu	99111	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
74719	chr15	63155171	63155530	+	0	NA	intron (NM_015920, intron 3 of 3)	intron (NM_015920, intron 3 of 3)	2127	NM_015920	51065		NM_015920	ENSG00000185088	RPS27L	-	ribosomal protein S27 like	protein-coding
59047	chr13	20566501	20567780	+	0	NA	promoter-TSS (NM_001353568)	promoter-TSS (NM_001353568)	-17	NM_001353572	8100		NM_006531	ENSG00000032742	IFT88	D13S1056E|DAF19|TG737|TTC10|hTg737	intraflagellar transport 88	protein-coding
135610	chr2	168137251	168137350	+	0	NA	intron (NM_013233, intron 8 of 17)	intron (NM_013233, intron 8 of 17)	110295	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
104974	chr17	81980701	81981450	+	0	NA	intron (NM_001251888, intron 2 of 16)	MER72|LTR|ERV1	3446	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
113329	chr19	8594951	8595430	+	0	NA	intron (NM_030957, intron 12 of 25)	intron (NM_030957, intron 12 of 25)	-2994	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
169816	chr3	177109701	177110430	+	0	NA	intron (NM_001374330, intron 1 of 14)	intron (NM_001374330, intron 1 of 14)	86413	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
64669	chr14	31944401	31945270	+	0	NA	promoter-TSS (NR_146544)	promoter-TSS (NR_146544)	-18	NR_146544	105370439		NR_146544	ENSG00000258474	LINC02313	-	long intergenic non-protein coding RNA 2313	ncRNA
63819	chr14	21452451	21452950	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	3423	NM_001170629	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
93698	chr17	19384121	19384380	+	0	NA	TTS (NM_139033)	TTS (NM_139033)	2940	NM_001198695	4239		NM_002404	ENSG00000166482	MFAP4	-	microfibril associated protein 4	protein-coding
52236	chr12	54398951	54400230	+	0	NA	intron (NM_002205, intron 27 of 29)	intron (NM_002205, intron 27 of 29)	-8292	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
190391	chr5	179794901	179795100	+	0	NA	intron (NM_145867, intron 1 of 4)	intron (NM_145867, intron 1 of 4)	1014	NM_145867	4056		NM_000897	ENSG00000213316	LTC4S	-	leukotriene C4 synthase	protein-coding
32261	chr10	102052101	102052300	+	0	NA	intron (NM_024541, intron 1 of 25)	intron (NM_024541, intron 1 of 25)	3973	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
181987	chr5	55221671	55221830	+	0	NA	intron (NM_001190787, intron 5 of 6)	AluSx|SINE|Alu	5565	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
169531	chr3	170158701	170159130	+	0	NA	intron (NM_001308116, intron 4 of 14)	AluJb|SINE|Alu	22818	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
210720	chr7	100607071	100607800	+	0	NA	intron (NM_002593, intron 6 of 8)	intron (NM_002593, intron 6 of 8)	-3397	NR_038910	100129845		NR_038910	ENSG00000224729	PCOLCE-AS1	-	PCOLCE antisense RNA 1	ncRNA
92362	chr17	8195901	8196730	+	0	NA	Intergenic	Intergenic	-6135	NM_017622	54785		NM_017622	ENSG00000196544	BORCS6	C17orf59|PRO2472	BLOC-1 related complex subunit 6	protein-coding
175639	chr4	76306051	76307330	+	0	NA	5' UTR (NM_003943, exon 1 of 2)	5' UTR (NM_003943, exon 1 of 2)	664	NM_003943	8987		NM_003943	ENSG00000118804	STBD1	GENEX3414|GENX-3414	starch binding domain 1	protein-coding
107270	chr18	43271871	43272030	+	0	NA	intron (NM_020783, intron 2 of 3)	intron (NM_020783, intron 2 of 3)	5540	NM_020783	6860		NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin 4	protein-coding
106965	chr18	31741101	31741380	+	0	NA	Intergenic	AluSx|SINE|Alu	19640	NM_001034172	147407		NM_001034172	ENSG00000141437	SLC25A52	MCART2	solute carrier family 25 member 52	protein-coding
157474	chr22	45296321	45297380	+	0	NA	TTS (NM_006953)	TTS (NM_006953)	11901	NM_001167574	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
12622	chr1	109109771	109110430	+	0	NA	intron (NM_001366200, intron 1 of 4)	intron (NM_001366200, intron 1 of 4)	2647	NR_158763	127003		NM_001122961	ENSG00000179902	CFAP276	C10orf194|C1orf194	cilia and flagella associated protein 276	protein-coding
33577	chr10	119493871	119494030	+	0	NA	Intergenic	AluJr|SINE|Alu	42583	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
86013	chr16	57479671	57479900	+	0	NA	promoter-TSS (NM_001369621)	promoter-TSS (NM_001369621)	-28	NM_001330556	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
153767	chr22	29524421	29524750	+	0	NA	intron (NM_003678, intron 12 of 19)	intron (NM_003678, intron 12 of 19)	29070	NM_001002878	8563		NM_003678	ENSG00000100296	THOC5	C22orf19|Fmip|PK1.3|fSAP79	THO complex subunit 5	protein-coding
56540	chr12	116820801	116821730	+	0	NA	intron (NM_001382266, intron 7 of 10)	intron (NM_001382266, intron 7 of 10)	60176	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
77431	chr15	84170171	84170650	+	0	NA	non-coding (NR_033787, exon 1 of 1)	non-coding (NR_033787, exon 1 of 1)	574	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
143497	chr20	31241651	31241830	+	0	NA	Intergenic	Intergenic	-15924	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
163175	chr3	50188301	50188750	+	0	NA	3' UTR (NM_001318800, exon 18 of 18)	3' UTR (NM_001318800, exon 18 of 18)	-3085	NM_144499	2779		NM_000172	ENSG00000114349	GNAT1	CSNB1G|CSNBAD3|GBT1|GNATR|HG1F	G protein subunit alpha transducin 1	protein-coding
27705	chr10	33155421	33156080	+	0	NA	Intergenic	Intergenic	-38943	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
172940	chr4	3520201	3520400	+	0	NA	intron (NR_110005, intron 2 of 7)	intron (NR_110005, intron 2 of 7)	11849	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
6098	chr1	27319301	27319500	+	0	NA	Intergenic	Intergenic	-2745	NM_032125	84065		NM_032125	ENSG00000186501	TMEM222	C1orf160|NEDMOSBA	transmembrane protein 222	protein-coding
184057	chr5	91443921	91444180	+	0	NA	Intergenic	Intergenic	-60733	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
188917	chr5	160398301	160398700	+	0	NA	intron (NM_001303251, intron 1 of 2)	AluSx|SINE|Alu	1554	NM_022090	63920		NM_022090	ENSG00000221886	FAM200C	Buster3|C5orf54|ZBED8	family with sequence similarity 200 member C	protein-coding
80311	chr16	2295071	2295450	+	0	NA	intron (NM_001089, intron 18 of 32)	intron (NM_001089, intron 18 of 32)	20640	NR_039868	100616241		NR_039868	ENSG00000264004	MIR4717	-	microRNA 4717	ncRNA
151445	chr21	46151621	46151880	+	0	NA	exon (NM_001350598, exon 1 of 2)	exon (NM_001350598, exon 1 of 2)	375	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
158648	chr3	5003871	5004250	+	0	NA	Intergenic	AluSp|SINE|Alu	-24099	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
76100	chr15	72497351	72497930	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	23310	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
32592	chr10	103502671	103502830	+	0	NA	intron (NR_120675, intron 2 of 3)	intron (NR_120675, intron 2 of 3)	9045	NM_004210	9148		NM_004210	ENSG00000107954	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding
195982	chr6	41974751	41974930	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx1|SINE|Alu	-32992	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
1574	chr1	3583351	3583850	+	0	NA	intron (NM_001409, intron 3 of 36)	CpG	-22810	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
218076	chr8	38928701	38928900	+	0	NA	intron (NM_021623, intron 2 of 11)	intron (NM_021623, intron 2 of 11)	27454	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
172696	chr4	2763801	2764650	+	0	NA	Intergenic	CpG	-7889	NM_024309	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
143511	chr20	31522451	31522950	+	0	NA	intron (NM_178580, intron 1 of 12)	intron (NM_178580, intron 1 of 12)	8258	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
106851	chr18	24051301	24051500	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-35940	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
167926	chr3	136178501	136179450	+	0	NA	intron (NM_018133, intron 1 of 1)	AluJr|SINE|Alu	15493	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
31196	chr10	91222001	91222230	+	0	NA	intron (NM_032373, intron 1 of 9)	intron (NM_032373, intron 1 of 9)	1452	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
76468	chr15	74857951	74858550	+	0	NA	intron (NM_001320778, intron 1 of 9)	intron (NM_001320778, intron 1 of 9)	-15094	NM_001284364	25989		NM_001099436	ENSG00000140474	ULK3	-	unc-51 like kinase 3	protein-coding
22366	chr1	217626451	217626550	+	0	NA	intron (NM_001297754, intron 1 of 5)	intron (NM_001297754, intron 1 of 5)	4590	NM_001297754	55105		NM_018040	ENSG00000092978	GPATCH2	CT110|GPATC2|PPP1R30|Pfa1	G-patch domain containing 2	protein-coding
20803	chr1	201172551	201172650	+	0	NA	Intergenic	Intergenic	-1018	NM_001288564	252839		NM_016456	ENSG00000116857	TMEM9	DERM4|TMEM9A	transmembrane protein 9	protein-coding
75392	chr15	65753101	65753500	+	0	NA	intron (NM_001376919, intron 3 of 31)	intron (NM_001376919, intron 3 of 31)	-33968	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
195213	chr6	36128001	36129000	+	0	NA	Intergenic	MIR|SINE|MIR	-2013	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
143836	chr20	32513251	32513980	+	0	NA	intron (NM_001256798, intron 3 of 10)	AluJo|SINE|Alu	3656	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
214432	chr7	149868501	149868980	+	0	NA	non-coding (NR_027040, exon 4 of 4)	non-coding (NR_027040, exon 4 of 4)	-4224	NM_001367792	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
229065	chr9	114348121	114348380	+	0	NA	intron (NM_001317952, intron 14 of 20)	intron (NM_001317952, intron 14 of 20)	18381	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
104127	chr17	80356171	80356580	+	0	NA	intron (NR_029376, intron 1 of 1)	intron (NR_029376, intron 1 of 1)	-58792	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
234129	chrX	9876351	9876450	+	0	NA	intron (NM_001649, intron 2 of 9)	intron (NM_001649, intron 2 of 9)	-35972	NM_001320664	357		NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
156023	chr22	39953271	39953430	+	0	NA	intron (NM_001291826, intron 2 of 6)	L2|LINE|L2	6533	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
51652	chr12	53042221	53042750	+	0	NA	TTS (NM_001417)	TTS (NM_001417)	-4506	NM_198316	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
176211	chr4	84481801	84482100	+	0	NA	Intergenic	CpG	17342	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
34882	chr11	369251	370400	+	0	NA	exon (NM_178537, exon 1 of 20)	exon (NM_178537, exon 1 of 20)	326	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
6408	chr1	27990351	27991350	+	0	NA	intron (NR_104214, intron 15 of 16)	intron (NR_104214, intron 15 of 16)	30877	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
88975	chr16	87868051	87868800	+	0	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	1082	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
113590	chr19	10276701	10277530	+	0	NA	intron (NM_000201, intron 2 of 6)	intron (NM_000201, intron 2 of 6)	5995	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
153510	chr22	26499551	26499850	+	0	NA	intron (NM_001346862, intron 6 of 12)	intron (NM_001346862, intron 6 of 12)	12773	NM_012143	24144		NM_012143	ENSG00000100109	TFIP11	NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6	tuftelin interacting protein 11	protein-coding
16247	chr1	153957721	153959350	+	0	NA	promoter-TSS (NM_181715)	promoter-TSS (NM_181715)	77	NM_181715	200186		NM_181715	ENSG00000160741	CRTC2	TORC-2|TORC2	CREB regulated transcription coactivator 2	protein-coding
203091	chr6	166382601	166384030	+	0	NA	promoter-TSS (NM_001270879)	promoter-TSS (NM_001270879)	-375	NR_164831	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
191208	chr6	5518901	5519980	+	0	NA	intron (NM_001374875, intron 4 of 6)	L2|LINE|L2	-61365	NR_125848	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
208874	chr7	73742221	73742600	+	0	NA	Intergenic	Intergenic	-3543	NM_001145364	83451		NM_148912	ENSG00000106077	ABHD11	PP1226|WBSCR21	abhydrolase domain containing 11	protein-coding
126006	chr2	25314101	25315580	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	13881	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
172668	chr4	2726501	2726900	+	0	NA	intron (NM_001256668, intron 19 of 19)	AluSq2|SINE|Alu	29636	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
89866	chr16	89636121	89636380	+	0	NA	intron (NM_004413, intron 3 of 10)	intron (NM_004413, intron 3 of 10)	15653	NM_004413	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
104292	chr17	80869051	80869350	+	0	NA	intron (NM_001163034, intron 13 of 29)	AluSx1|SINE|Alu	-63568	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
175701	chr4	77078051	77078450	+	0	NA	Intergenic	L1MB7|LINE|L1	-2261	NM_006835	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
158960	chr3	10223621	10224180	+	0	NA	intron (NM_001570, intron 9 of 12)	intron (NM_001570, intron 9 of 12)	-24559	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
164638	chr3	66474371	66474630	+	0	NA	intron (NM_001377345, intron 1 of 18)	AluSq2|SINE|Alu	25554	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
131873	chr2	98715351	98716530	+	0	NA	intron (NM_012214, intron 2 of 15)	L1MC4a|LINE|L1	15192	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
189020	chr5	168748471	168748630	+	0	NA	intron (NM_003062, intron 19 of 35)	intron (NM_003062, intron 19 of 35)	19705	NR_029632	407001		NR_029632	ENSG00000207739	MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	ncRNA
111821	chr19	4506451	4507150	+	0	NA	intron (NM_001367868, intron 6 of 7)	intron (NM_001367868, intron 6 of 7)	11686	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
140150	chr2	231603051	231603480	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	10401	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
40113	chr11	62816271	62817230	+	0	NA	intron (NM_001244666, intron 10 of 10)	AluSc|SINE|Alu	-11310	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
85955	chr16	57265071	57265580	+	0	NA	intron (NM_015993, intron 1 of 3)	intron (NM_015993, intron 1 of 3)	19347	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
139848	chr2	230471371	230471530	+	0	NA	TTS (NM_001206704)	TTS (NM_001206704)	54694	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
183710	chr5	80985721	80986050	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-24978	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
125861	chr2	24508521	24509030	+	0	NA	intron (NM_001362954, intron 1 of 23)	L1MC5|LINE|L1	16898	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
67482	chr14	70914151	70914450	+	0	NA	intron (NM_014982, intron 1 of 35)	L1PA17|LINE|L1	6841	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
31358	chr10	93482071	93483430	+	0	NA	promoter-TSS (NM_013451)	promoter-TSS (NM_013451)	-416	NM_013451	26509		NM_013451	ENSG00000138119	MYOF	FER1L3|HAE7	myoferlin	protein-coding
13994	chr1	120646621	120646880	+	0	NA	intron (NR_144516, intron 2 of 43)	AluJr|SINE|Alu	18686	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
53562	chr12	67628871	67629380	+	0	NA	Intergenic	AluJr|SINE|Alu	-19620	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
3687	chr1	16511401	16511600	+	0	NA	Intergenic	Intergenic	2785	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
8136	chr1	39271971	39272550	+	0	NA	intron (NM_012090, intron 5 of 92)	intron (NM_012090, intron 5 of 92)	-136813	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
15513	chr1	150485651	150485750	+	0	NA	Intergenic	AluSp|SINE|Alu	-1719	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
150151	chr21	38769471	38769780	+	0	NA	promoter-TSS (NR_027066)	promoter-TSS (NR_027066)	-651	NR_027066	400866		NM_001001789	ENSG00000223806	LINC00114	C21orf24|NCRNA00114	long intergenic non-protein coding RNA 114	ncRNA
78014	chr15	89813901	89814350	+	0	NA	intron (NM_001381923, intron 1 of 20)	intron (NM_001381923, intron 1 of 20)	727	NM_001381923	290		NM_001150	ENSG00000166825	ANPEP	AP-M|AP-N|APN|CD13|GP150|LAP1|P150|PEPN|hAPN	alanyl aminopeptidase, membrane	protein-coding
196703	chr6	44929751	44929850	+	0	NA	intron (NM_001350324, intron 10 of 11)	intron (NM_001350324, intron 10 of 11)	267970	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
60903	chr13	46165271	46166300	+	0	NA	intron (NM_002298, intron 1 of 15)	intron (NM_002298, intron 1 of 15)	16392	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
234994	chrX	39774021	39774880	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-63111	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
148961	chr21	13544801	13545000	+	0	NA	Intergenic	Intergenic	-1133	NR_110544	102724188		NR_110544	ENSG00000228159	LINC01674	-	long intergenic non-protein coding RNA 1674	ncRNA
199500	chr6	118670021	118670280	+	0	NA	intron (NM_001178035, intron 1 of 13)	MLT1H2|LTR|ERVL-MaLR	-18559	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
50155	chr12	45879801	45880200	+	0	NA	intron (NM_152641, intron 16 of 20)	intron (NM_152641, intron 16 of 20)	110574	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
156329	chr22	40669001	40669500	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-10234	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
12275	chr1	100500521	100501180	+	0	NA	intron (NM_003672, intron 15 of 15)	(GT)n|Simple_repeat|Simple_repeat	-37289	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
238462	chrX	153032421	153033280	+	0	NA	Intergenic	Intergenic	-23620	NM_013364	29944		NM_013364	ENSG00000183837	PNMA3	MA3|MA5	PNMA family member 3	protein-coding
66072	chr14	58599351	58599450	+	0	NA	Intergenic	Intergenic	-34661	NR_046093	51339		NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding
134144	chr2	134197651	134197750	+	0	NA	intron (NM_001371457, intron 1 of 16)	MLT1J|LTR|ERVL-MaLR	-56372	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
183567	chr5	80146071	80146430	+	0	NA	intron (NM_001174072, intron 10 of 11)	intron (NM_001174072, intron 10 of 11)	-62585	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
174977	chr4	49640201	49641330	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	654123	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
107543	chr18	48676471	48677030	+	0	NA	intron (NM_014772, intron 6 of 11)	intron (NM_014772, intron 6 of 11)	6150	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
14140	chr1	121016051	121016830	+	0	NA	intron (NR_135813, intron 2 of 2)	intron (NR_135813, intron 2 of 2)	35727	NR_135813	101929798		NR_135813	ENSG00000290904	PDE4DIPP4	CH17-118O6.3	PDE4DIP pseudogene 4	pseudo
125955	chr2	25214201	25214680	+	0	NA	Intergenic	Intergenic	10127	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
128413	chr2	55236771	55237350	+	0	NA	intron (NM_001321002, intron 15 of 15)	intron (NM_001321002, intron 15 of 15)	2896	NR_039624	100616345		NR_039624	ENSG00000283795	MIR4426	-	microRNA 4426	ncRNA
196954	chr6	52676051	52676150	+	0	NA	intron (NM_014051, intron 1 of 4)	intron (NM_014051, intron 1 of 4)	4987	NM_014051	28978		NM_014051	ENSG00000096092	TMEM14A	C6orf73|PTD011	transmembrane protein 14A	protein-coding
28797	chr10	62109951	62110450	+	0	NA	Intergenic	Intergenic	60843	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
48536	chr12	10211851	10213000	+	0	NA	promoter-TSS (NM_001363598)	promoter-TSS (NM_001363598)	-452	NM_001363598	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
59110	chr13	21179271	21179430	+	0	NA	TTS (NM_024026)	TTS (NM_024026)	2692	NM_024026	78988		NM_024026	ENSG00000173141	MRPL57	MRP63|bMRP63|mL63	mitochondrial ribosomal protein L57	protein-coding
78837	chr15	99803851	99804150	+	0	NA	intron (NR_003260, intron 2 of 4)	MIRc|SINE|MIR	2927	NR_003260	196968		NM_194295	ENSG00000290767	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	dynamin 1 pseudogene 46	pseudo
109150	chr18	80261471	80261630	+	0	NA	Intergenic	MER92-int|LTR|ERV1	-14036	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
79780	chr16	1377001	1377250	+	0	NA	intron (NM_001372107, intron 10 of 14)	AluSx1|SINE|Alu	2527	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
2088	chr1	7953821	7954900	+	0	NA	Intergenic	CpG	-7294	NM_001123377	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
180853	chr5	32593301	32594450	+	0	NA	intron (NM_006713, intron 3 of 4)	AluSc|SINE|Alu	8318	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
39943	chr11	62549351	62549450	+	0	NA	Intergenic	AluSc|SINE|Alu	-2594	NM_001620	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
209656	chr7	77935571	77935730	+	0	NA	intron (NM_001366086, intron 10 of 17)	intron (NM_001366086, intron 10 of 17)	95520	NM_001127359	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
121483	chr19	47125151	47126050	+	0	NA	Intergenic	Intergenic	-5235	NM_001145713	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
223840	chr8	145075021	145075850	+	0	NA	Intergenic	L1PA6|LINE|L1	22968	NM_023080	65265		NM_023080	ENSG00000182307	C8orf33	-	chromosome 8 open reading frame 33	protein-coding
137456	chr2	196990801	196991000	+	0	NA	TTS (NM_001367496)	TTS (NM_001367496)	-64193	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
148855	chr21	8420001	8420680	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	-12190	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
142984	chr20	20181171	20181730	+	0	NA	intron (NM_015585, intron 13 of 26)	intron (NM_015585, intron 13 of 26)	124804	NM_001167816	26074		NM_015585	ENSG00000089101	CFAP61	C20orf26|CaM-IP3|SPGF84|dJ1002M8.3|dJ1178H5.4	cilia and flagella associated protein 61	protein-coding
179	chr1	666551	666850	+	0	NA	Intergenic	L1PA15-16|LINE|L1	19954	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
223375	chr8	143883301	143883500	+	0	NA	Intergenic	Intergenic	-4933	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238575	chrX	153829571	153831550	+	0	NA	promoter-TSS (NM_001303515)	promoter-TSS (NM_001303515)	-16	NM_032512	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
125605	chr2	17946451	17946650	+	0	NA	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	67883	NM_002252	3790		NM_002252	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel modifier subfamily S member 3	protein-coding
23919	chr1	235041051	235041550	+	0	NA	Intergenic	Intergenic	28518	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
85437	chr16	50467951	50468650	+	0	NA	Intergenic	CpG	-73167	NR_146572	105371248		NR_146572	ENSG00000261092	LINC02178	-	long intergenic non-protein coding RNA 2178	ncRNA
196604	chr6	44239671	44239830	+	0	NA	Intergenic	L1M5|LINE|L1	-6416	NM_001271970	3326		NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
74207	chr15	56166101	56166730	+	0	NA	intron (NM_001368073, intron 2 of 8)	L4_A_Mam|LINE|RTE-X	23517	NM_001370554	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
53291	chr12	64407071	64407830	+	0	NA	intron (NM_007235, intron 1 of 24)	AluSx|SINE|Alu	3058	NM_007235	11260		NM_007235	ENSG00000184575	XPOT	XPO3	exportin for tRNA	protein-coding
64003	chr14	22492821	22492950	+	0	NA	Intergenic	Intergenic	-9926	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
209906	chr7	92132771	92132930	+	0	NA	intron (NM_001146152, intron 1 of 9)	intron (NM_001146152, intron 1 of 9)	1627	NM_000786	1595		NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
157102	chr22	42635701	42635900	+	0	NA	intron (NM_001129819, intron 2 of 8)	intron (NM_001129819, intron 2 of 8)	4801	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
716	chr1	1431551	1431800	+	0	NA	intron (NR_125994, intron 1 of 1)	intron (NR_125994, intron 1 of 1)	2898	NR_125996	102724312		NR_125994		LINC01770	-	long intergenic non-protein coding RNA 1770	ncRNA
20071	chr1	186206171	186206330	+	0	NA	Intergenic	Intergenic	-90023	NM_001127709	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
24748	chr1	248752151	248753650	+	0	NA	intron (NM_001291283, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	2859	NM_001085474	646627		NM_001085474	ENSG00000259823	LYPD8	-	LY6/PLAUR domain containing 8	protein-coding
26425	chr10	17229701	17232030	+	0	NA	promoter-TSS (NR_108061)	promoter-TSS (NR_108061)	-880	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
91942	chr17	7345751	7346480	+	0	NA	intron (NM_014716, intron 10 of 21)	intron (NM_014716, intron 10 of 21)	-5774	NM_001002914	147040		NM_001002914	ENSG00000213859	KCTD11	C17orf36|KCASH1|REN|REN/KCTD11	potassium channel tetramerization domain containing 11	protein-coding
124796	chr2	7454401	7454800	+	0	NA	Intergenic	Intergenic	33339	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
218192	chr8	42000371	42000730	+	0	NA	intron (NM_001305878, intron 2 of 13)	AluSx1|SINE|Alu	-51200	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
75022	chr15	64068551	64068850	+	0	NA	Intergenic	AluJr|SINE|Alu	-22215	NM_001384998	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
26373	chr10	16520171	16521900	+	0	NA	exon (NM_001010908, exon 1 of 2)	exon (NM_001010908, exon 1 of 2)	844	NM_001010908	389941		NM_001010908	ENSG00000165985	C1QL3	C1QTNF13|C1ql|CTRP13|K100	complement C1q like 3	protein-coding
94306	chr17	28745001	28746530	+	0	NA	intron (NM_004295, intron 1 of 6)	intron (NM_004295, intron 1 of 6)	1754	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
221395	chr8	123462901	123463100	+	0	NA	Intergenic	Intergenic	46226	NM_018024	55093		NM_018024	ENSG00000156795	NTAQ1	C8orf32|WDYHV1	N-terminal glutamine amidase 1	protein-coding
102743	chr17	76259501	76259900	+	0	NA	Intergenic	MIR|SINE|MIR	-5648	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
200625	chr6	136790401	136790730	+	0	NA	intron (NM_005923, intron 1 of 29)	intron (NM_005923, intron 1 of 29)	1912	NM_005923	4217		NM_005923	ENSG00000197442	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
227403	chr9	89533471	89533850	+	0	NA	Intergenic	Intergenic	-35547	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
197318	chr6	73112551	73112650	+	0	NA	intron (NM_001160133, intron 7 of 14)	AluY|SINE|Alu	30914	NR_046621	100873997		NR_046621	ENSG00000229154	KCNQ5-AS1	-	KCNQ5 antisense RNA 1	ncRNA
182474	chr5	62343301	62343680	+	0	NA	intron (NM_001243952, intron 2 of 20)	L2|LINE|L2	37284	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
58862	chr12	133132521	133133380	+	0	NA	intron (NM_015394, intron 1 of 4)	L1ME2z|LINE|L1	2323	NM_015394	7556		NM_015394	ENSG00000256223	ZNF10	KOX1	zinc finger protein 10	protein-coding
51725	chr12	53216001	53216280	+	0	NA	intron (NM_001243730, intron 2 of 8)	MIR3|SINE|MIR	4222	NM_001042728	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
218049	chr8	38827001	38827280	+	0	NA	intron (NR_148050, intron 4 of 4)	intron (NR_148050, intron 4 of 4)	21690	NM_001352802	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
179565	chr4	185208621	185209900	+	0	NA	promoter-TSS (NM_001378038)	promoter-TSS (NM_001378038)	-297	NM_001378037	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
59451	chr13	25905951	25906580	+	0	NA	intron (NM_016529, intron 33 of 36)	intron (NM_016529, intron 33 of 36)	145751	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
195495	chr6	37169251	37171600	+	0	NA	exon (NM_001243186, exon 1 of 6)	exon (NM_001243186, exon 1 of 6)	273	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
69122	chr14	92528721	92529230	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	15194	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
194093	chr6	31901491	31903200	+	0	NA	promoter-TSS (NM_181842).4	promoter-TSS (NM_181842).4	-259	NM_181842	221527		NM_181842	ENSG00000204366	ZBTB12	Bat9|C6orf46|D6S59E|G10|NG35	zinc finger and BTB domain containing 12	protein-coding
126494	chr2	28402851	28402950	+	0	NA	intron (NM_005253, intron 1 of 3)	MIR|SINE|MIR	-8228	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
21946	chr1	207885021	207885930	+	0	NA	3' UTR (NM_001025109, exon 8 of 8)	3' UTR (NM_001025109, exon 8 of 8)	25650	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
63443	chr13	114112601	114113180	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	19733	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
102644	chr17	76036821	76037450	+	0	NA	Intergenic	Intergenic	-9829	NM_001988	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
236053	chrX	56248421	56248780	+	0	NA	intron (NM_001324099, intron 1 of 3)	intron (NM_001324099, intron 1 of 3)	15442	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
35857	chr11	2374201	2374400	+	0	NA	intron (NR_108080, intron 1 of 2)	intron (NR_108080, intron 1 of 2)	-1877	NM_001297649	975		NM_004356	ENSG00000110651	CD81	CVID6|S5.7|TAPA1|TSPAN28	CD81 molecule	protein-coding
24971	chr10	3057851	3058730	+	0	NA	non-coding (NR_160681, exon 2 of 4)	non-coding (NR_160681, exon 2 of 4)	8643	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
154159	chr22	31284421	31285400	+	0	NA	intron (NM_001135911, intron 4 of 4)	intron (NM_001135911, intron 4 of 4)	7578	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
111327	chr19	3630951	3631050	+	0	NA	3' UTR (NM_012398, exon 18 of 18)	3' UTR (NM_012398, exon 18 of 18)	-4185	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
165809	chr3	105819151	105819450	+	0	NA	intron (NM_001321811, intron 3 of 16)	AluSx|SINE|Alu	48291	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
119278	chr19	39551271	39552180	+	0	NA	Intergenic	AluJb|SINE|Alu	-11564	NM_153232	163126		NM_153232	ENSG00000176396	EID2	CRI2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
125367	chr2	11127801	11128250	+	0	NA	intron (NR_040080, intron 3 of 8)	MLT1G3|LTR|ERVL-MaLR	4151	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
24302	chr1	236605551	236605650	+	0	NA	Intergenic	Intergenic	-1084	NM_018072	55127		NM_018072	ENSG00000119285	HEATR1	BAP28|UTP10	HEAT repeat containing 1	protein-coding
37471	chr11	18331501	18331880	+	0	NA	intron (NM_001142307, intron 2 of 15)	intron (NM_001142307, intron 2 of 15)	9123	NM_005316	2965		NM_005316	ENSG00000110768	GTF2H1	BTF2|P62|TFB1|TFIIH	general transcription factor IIH subunit 1	protein-coding
43836	chr11	86995401	86995600	+	0	NA	intron (NR_038905, intron 2 of 2)	intron (NR_038905, intron 2 of 2)	39879	NR_038905	100506368		NR_038905	ENSG00000246523	FZD4-DT	-	FZD4 divergent transcript	ncRNA
42356	chr11	68549151	68549480	+	0	NA	intron (NR_147970, intron 4 of 23)	intron (NR_147970, intron 4 of 23)	88563	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
73537	chr15	43828151	43828750	+	0	NA	intron (NM_024908, intron 2 of 12)	intron (NM_024908, intron 2 of 12)	1448	NM_001167941	79968		NM_024908	ENSG00000092470	WDR76	CDW14|CMR1	WD repeat domain 76	protein-coding
108826	chr18	79015201	79015400	+	0	NA	Intergenic	Intergenic	35025	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
111243	chr19	3520121	3521000	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	-2396	NM_001136197	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
118942	chr19	38792601	38793200	+	0	NA	Intergenic	CpG-14437	3700	NM_001042507	653499		NM_001042507	ENSG00000178934	LGALS7B	GAL7|Gal-7|HKL-14|LGALS7|PI7	galectin 7B	protein-coding
12755	chr1	109625951	109626250	+	0	NA	intron (NM_139156, intron 3 of 17)	intron (NM_139156, intron 3 of 17)	2112	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
179472	chr4	184473701	184475500	+	0	NA	promoter-TSS (NM_002199)	promoter-TSS (NM_002199)	-50	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
162407	chr3	48239421	48239680	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1554	NM_016089	51385		NM_016089	ENSG00000164048	ZNF589	SZF1	zinc finger protein 589	protein-coding
30383	chr10	78042321	78042880	+	0	NA	intron (NM_001142285, intron 4 of 4)	intron (NM_001142285, intron 4 of 4)	8737	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
19932	chr1	184533001	184533200	+	0	NA	intron (NM_030806, intron 3 of 5)	intron (NM_030806, intron 3 of 5)	146071	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
36081	chr11	2994751	2995050	+	0	NA	Intergenic	AluJr|SINE|Alu	-2571	NM_001369375	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
133893	chr2	130154521	130154980	+	0	NA	intron (NM_017951, intron 15 of 19)	intron (NM_017951, intron 15 of 19)	-9638	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
13068	chr1	111481621	111482180	+	0	NA	Intergenic	Intergenic	7916	NM_001300834	128346		NM_174896	ENSG00000143110	C1orf162	-	chromosome 1 open reading frame 162	protein-coding
1824	chr1	6244051	6244150	+	0	NA	promoter-TSS (NM_001024598)	promoter-TSS (NM_001024598)	-79	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
111570	chr19	4059051	4059150	+	0	NA	intron (NM_015898, intron 1 of 2)	intron (NM_015898, intron 1 of 2)	6429	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
6934	chr1	31705001	31705730	+	0	NA	Intergenic	Intergenic	-1348	NM_001856	1307		NM_001856	ENSG00000084636	COL16A1	447AA|FP1572	collagen type XVI alpha 1 chain	protein-coding
201071	chr6	142695521	142695600	+	0	NA	Intergenic	Intergenic	-57671	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
117158	chr19	19327551	19327850	+	0	NA	intron (NM_015329, intron 1 of 18)	intron (NM_015329, intron 1 of 18)	6871	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
68519	chr14	88791051	88791150	+	0	NA	intron (NM_001385117, intron 1 of 21)	intron (NM_001385117, intron 1 of 21)	1853	NM_001385116	161436		NM_183387	ENSG00000165521	EML5	EMAP-2|EMAP-5|FAP16	EMAP like 5	protein-coding
179104	chr4	168585601	168585800	+	0	NA	intron (NM_001166108, intron 2 of 21)	intron (NM_001166108, intron 2 of 21)	-45878	NM_001166109	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
42198	chr11	68000151	68000250	+	0	NA	intron (NM_030930, intron 3 of 10)	intron (NM_030930, intron 3 of 10)	3897	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
230121	chr9	127712901	127713580	+	0	NA	TTS (NM_001345980)	TTS (NM_001345980)	2423	NM_001002913	138428		NM_001002913	ENSG00000187024	PTRH1	C9orf115|PTH1	peptidyl-tRNA hydrolase 1 homolog	protein-coding
64178	chr14	22972521	22972780	+	0	NA	3' UTR (NM_032876, exon 8 of 8)	3' UTR (NM_032876, exon 8 of 8)	4192	NM_198086	84962		NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
44581	chr11	108245601	108246200	+	0	NA	intron (NM_000051, intron 7 of 62)	AluSx1|SINE|Alu	22371	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
116748	chr19	18476971	18477850	+	0	NA	intron (NM_006532, intron 1 of 11)	L1M4a1|LINE|L1	-39277	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
210173	chr7	98433321	98433600	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	-32370	NM_018842	55971		NM_018842	ENSG00000006453	BAIAP2L1	IRTKS	BAR/IMD domain containing adaptor protein 2 like 1	protein-coding
118024	chr19	34187071	34187930	+	0	NA	intron (NM_001384434, intron 1 of 9).2	AluSx|SINE|Alu	14996	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
7716	chr1	36096571	36096730	+	0	NA	3' UTR (NM_005202, exon 4 of 4)	3' UTR (NM_005202, exon 4 of 4)	7758	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
94937	chr17	32057221	32057480	+	0	NA	Intergenic	Intergenic	17014	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
236359	chrX	70456151	70456780	+	0	NA	promoter-TSS (NR_046586)	promoter-TSS (NR_046586)	-471	NR_109801	100873930		NR_046586	ENSG00000231651	DLG3-AS1	-	DLG3 antisense RNA 1	ncRNA
106357	chr18	13219721	13219980	+	0	NA	intron (NM_001378100, intron 1 of 6)	intron (NM_001378100, intron 1 of 6)	1090	NM_001378100	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
61846	chr13	76885121	76887600	+	0	NA	promoter-TSS (NM_138444)	promoter-TSS (NM_138444)	45	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
42405	chr11	69050301	69050580	+	0	NA	intron (NM_139075, intron 1 of 24)	AluSx1|SINE|Alu	1508	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
64871	chr14	35304951	35305250	+	0	NA	intron (NM_001282232, intron 1 of 6)	intron (NM_001282232, intron 1 of 6)	12718	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
42891	chr11	73364521	73364880	+	0	NA	intron (NM_014786, intron 18 of 20)	intron (NM_014786, intron 18 of 20)	-11699	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
38877	chr11	47375171	47375330	+	0	NA	intron (NM_003120, intron 2 of 4)	intron (NM_003120, intron 2 of 4)	3297	NM_003120	6688		NM_003120	ENSG00000066336	SPI1	AGM10|OF|PU.1|SFPI1|SPI-1|SPI-A	Spi-1 proto-oncogene	protein-coding
190436	chr5	179839971	179840480	+	0	NA	intron (NM_016175, intron 6 of 6)	AluSz|SINE|Alu	18592	NM_016175	51149		NM_016175	ENSG00000161010	MRNIP	C5orf45	MRN complex interacting protein	protein-coding
128295	chr2	54606551	54606850	+	0	NA	intron (NM_178313, intron 2 of 30)	intron (NM_178313, intron 2 of 30)	48306	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
90814	chr17	2262921	2263460	+	0	NA	intron (NM_017575, intron 8 of 18)	intron (NM_017575, intron 8 of 18)	2995	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
205919	chr7	25620171	25620750	+	0	NA	intron (NR_157815, intron 3 of 4)	intron (NR_157815, intron 3 of 4)	42680	NR_157819	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
135917	chr2	171530001	171530200	+	0	NA	intron (NM_001127383, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	7626	NM_024843	79901		NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
8294	chr1	40044721	40045230	+	0	NA	intron (NM_001350484, intron 2 of 13)	AluYc|SINE|Alu	3949	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
41433	chr11	66067821	66068800	+	0	NA	exon (NM_006842, exon 21 of 22)	exon (NM_006842, exon 21 of 22)	-1962	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
124768	chr2	7057771	7058500	+	0	NA	intron (NM_001349181, intron 8 of 9)	intron (NM_001349181, intron 8 of 9)	19745	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
161195	chr3	39143271	39143650	+	0	NA	exon (NM_001320560, exon 5 of 5)	exon (NM_001320560, exon 5 of 5)	3970	NM_001320559	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
2679	chr1	10539001	10539580	+	0	NA	intron (NM_004565, intron 3 of 8)	intron (NM_004565, intron 3 of 8)	64340	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
182102	chr5	56055371	56055530	+	0	NA	Intergenic	Intergenic	60283	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
90037	chr16	89906501	89907930	+	0	NA	intron (NM_014972, intron 15 of 17)	intron (NM_014972, intron 15 of 17)	-11647	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
29193	chr10	68970271	68970630	+	0	NA	intron (NM_004728, intron 8 of 14)	intron (NM_004728, intron 8 of 14)	14010	NM_001256910	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
7683	chr1	35809971	35810350	+	0	NA	intron (NM_017629, intron 1 of 17)	intron (NM_017629, intron 1 of 17)	2144	NM_017629	192670		NM_017629	ENSG00000134698	AGO4	EIF2C4	argonaute RISC component 4	protein-coding
141477	chr2	241081001	241081200	+	0	NA	intron (NR_138463, intron 6 of 6)	L1MC5a|LINE|L1	21187	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
17490	chr1	156723771	156723930	+	0	NA	intron (NM_001370150, intron 3 of 3)	intron (NM_001370150, intron 3 of 3)	4589	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
97673	chr17	44224951	44225330	+	0	NA	Intergenic	Intergenic	-3836	NR_045058	7343		NM_014233	ENSG00000108312	UBTF	CONDBA|NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor	protein-coding
174808	chr4	48125101	48125700	+	0	NA	intron (NM_003328, intron 1 of 14)	intron (NM_003328, intron 1 of 14)	8850	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
190897	chr6	2773001	2773400	+	0	NA	intron (NM_020135, intron 3 of 6)	intron (NM_020135, intron 3 of 6)	-2824	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
194399	chr6	33006021	33006780	+	0	NA	3' UTR (NM_002119, exon 5 of 5)	3' UTR (NM_002119, exon 5 of 5)	3191	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
105012	chr17	82035401	82035600	+	0	NA	TTS (NM_001195218)	TTS (NM_001195218)	2197	NM_016286	51181		NM_016286	ENSG00000169738	DCXR	DCR|HCR2|HCRII|KIDCR|P34H|PNTSU|SDR20C1|XR	dicarbonyl and L-xylulose reductase	protein-coding
132627	chr2	108622801	108623380	+	0	NA	intron (NM_001371500, intron 1 of 2)	intron (NM_001371500, intron 1 of 2)	1839	NM_001371500	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
51917	chr12	53693251	53693900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17245	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
202629	chr6	158750251	158750650	+	0	NA	intron (NM_001318745, intron 9 of 14)	intron (NM_001318745, intron 9 of 14)	14303	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
94455	chr17	29253801	29254000	+	0	NA	intron (NM_005208, intron 5 of 5)	intron (NM_005208, intron 5 of 5)	7041	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
3030	chr1	12132671	12133830	+	0	NA	intron (NM_001281430, intron 11 of 13)	L1M5|LINE|L1	-33693	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
218343	chr8	42898301	42898830	+	0	NA	intron (NM_032410, intron 1 of 21)	intron (NM_032410, intron 1 of 21)	1587	NM_032410	84376		NM_032410	ENSG00000168172	HOOK3	HK3	hook microtubule tethering protein 3	protein-coding
5149	chr1	24907601	24908330	+	0	NA	intron (NM_001031680, intron 4 of 5)	CpG	11451	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
84284	chr16	30074071	30074230	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1844	NM_001303503	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
218227	chr8	42040571	42040730	+	0	NA	intron (NM_001305878, intron 2 of 13)	AluSq2|SINE|Alu	-11100	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
17465	chr1	156708671	156709500	+	0	NA	Intergenic	Intergenic	-3269	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
25297	chr10	6198221	6198480	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-4582	NM_001363545	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
219937	chr8	86703401	86703630	+	0	NA	intron (NM_019098, intron 3 of 17)	intron (NM_019098, intron 3 of 17)	40119	NM_019098	54714		NM_019098	ENSG00000170289	CNGB3	ACHM1	cyclic nucleotide gated channel subunit beta 3	protein-coding
160708	chr3	32401501	32402380	+	0	NA	intron (NM_138410, intron 1 of 4)	CpG	10087	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
18274	chr1	161112371	161112680	+	0	NA	intron (NM_012394, intron 1 of 3)	AluJo|SINE|Alu	5512	NM_012394	5202		NM_012394	ENSG00000143256	PFDN2	PFD2	prefoldin subunit 2	protein-coding
88229	chr16	81961961	81962130	+	0	NA	3' UTR (NM_002661, exon 33 of 33)	3' UTR (NM_002661, exon 33 of 33)	49425	NM_145168	93517		NM_145168	ENSG00000184860	SDR42E1	HSPC105	short chain dehydrogenase/reductase family 42E, member 1	protein-coding
24862	chr10	656901	657300	+	0	NA	intron (NM_014974, intron 1 of 36)	intron (NM_014974, intron 1 of 36)	7065	NM_001355390	414235		NM_001012714	ENSG00000180525	DIP2C-AS1	C10orf108|PRR26	DIP2C antisense RNA 1	ncRNA
23612	chr1	230167201	230167750	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	100237	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
31118	chr10	89363751	89364250	+	0	NA	Intergenic	Intergenic	-14056	NM_001010987	439996		NM_001010987	ENSG00000204010	IFIT1B	IFIT1L|bA149I23.6	interferon induced protein with tetratricopeptide repeats 1B	protein-coding
65577	chr14	51993651	51993950	+	0	NA	exon (NM_016039, exon 3 of 8)	exon (NM_016039, exon 3 of 8)	4254	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
198325	chr6	101266101	101266300	+	0	NA	Intergenic	L1MB2|LINE|L1	-127508	NM_021956	2898		NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6|NEDLAS	glutamate ionotropic receptor kainate type subunit 2	protein-coding
229476	chr9	122121901	122122100	+	0	NA	Intergenic	Intergenic	-1833	NR_039690	100616312		NR_039690	ENSG00000266583	MIR4478	mir-4478	microRNA 4478	ncRNA
40353	chr11	63961601	63962800	+	0	NA	Intergenic	Intergenic	-12420	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
195162	chr6	35763401	35763830	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-12983	NM_207409	389383		NM_207409	ENSG00000196748	CLPSL2	AAAL3045|C6orf126|UNQ3045|dJ510O8.5	colipase like 2	protein-coding
72015	chr15	28087501	28087900	+	0	NA	intron (NM_000275, intron 1 of 23)	AluJb|SINE|Alu	11615	NM_000275	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
82627	chr16	18950701	18950900	+	0	NA	Intergenic	AluSc|SINE|Alu	-24392	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
46051	chr11	122715851	122716380	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	60393	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
142505	chr20	4795171	4795630	+	0	NA	intron (NM_170774, intron 4 of 10)	intron (NM_170774, intron 4 of 10)	19723	NM_170774	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
105337	chr17	82613251	82613550	+	0	NA	Intergenic	Intergenic	35044	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
144386	chr20	35171921	35172680	+	0	NA	intron (NM_006404, intron 1 of 3)	intron (NM_006404, intron 1 of 3)	228	NM_006404	10544		NM_006404	ENSG00000101000	PROCR	CCCA|CCD41|EPCR	protein C receptor	protein-coding
235339	chrX	44032721	44033180	+	0	NA	Intergenic	Intergenic	-59560	NM_000266	4693		NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	norrin cystine knot growth factor NDP	protein-coding
218465	chr8	48923421	48923680	+	0	NA	Intergenic	CpG	-2121	NM_003068	6591		NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding
37370	chr11	16737621	16739950	+	0	NA	promoter-TSS (NM_001367872)	promoter-TSS (NM_001367872)	138	NM_014267	10944		NM_014267	ENSG00000110696	C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
50315	chr12	46546821	46547150	+	0	NA	intron (NR_125380, intron 3 of 3)	intron (NR_125380, intron 3 of 3)	162878	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
211668	chr7	106279551	106280180	+	0	NA	intron (NM_005746, intron 1 of 10)	L2c|LINE|L2	5118	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
45887	chr11	120172151	120172600	+	0	NA	TTS (NR_159965)	TTS (NR_159965)	3398	NR_159965	107984399		NR_159965	ENSG00000176984	LOC107984399	-	uncharacterized LOC107984399	ncRNA
31811	chr10	98619471	98619630	+	0	NA	intron (NM_001166244, intron 7 of 10)	intron (NM_001166244, intron 7 of 10)	-172587	NM_001322477	3257		NM_000195	ENSG00000107521	HPS1	BLOC3S1|HPS	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding
35819	chr11	2261571	2261930	+	0	NA	Intergenic	Intergenic	8838	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
75586	chr15	67088201	67088680	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	22838	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
225628	chr9	36306821	36307080	+	0	NA	Intergenic	LTR33B|LTR|ERVL	-29972	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
58748	chr12	132608271	132608650	+	0	NA	intron (NM_001195520, intron 1 of 5)	(CCCCTGA)n|Simple_repeat|Simple_repeat	2122	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
66194	chr14	61025271	61025480	+	0	NA	intron (NM_153811, intron 5 of 15)	intron (NM_153811, intron 5 of 15)	-43685	NM_001350253	57570		NM_020810	ENSG00000126814	TRMT5	COXPD26|KIAA1393|PNSED|TRM5	tRNA methyltransferase 5	protein-coding
32386	chr10	102416271	102417850	+	0	NA	5' UTR (NM_002779, exon 2 of 17)	5' UTR (NM_002779, exon 2 of 17)	1725	NM_002779	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
115581	chr19	15868871	15869280	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-4151	NM_001302493	102724279		NM_001302493	ENSG00000291059	CLEC4OP	CLEC4O|LINC01835	C-type lectin domain family 4 member O, pseudogene	pseudo
205080	chr7	6642151	6642250	+	0	NA	intron (NM_001278559, intron 4 of 8)	intron (NM_001278559, intron 4 of 8)	4882	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
197279	chr6	70708351	70708730	+	0	NA	intron (NM_001281440, intron 1 of 10)	L1MA9|LINE|L1	40010	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
124229	chr19	57305271	57305630	+	0	NA	Intergenic	Intergenic	-15022	NM_213598	125919		NM_213598	ENSG00000178229	ZNF543	-	zinc finger protein 543	protein-coding
2921	chr1	11728971	11729300	+	0	NA	Intergenic	Intergenic	-6950	NM_001040194	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
59350	chr13	24613901	24614280	+	0	NA	Intergenic	Intergenic	33882	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
86242	chr16	58199971	58200130	+	0	NA	Intergenic	Intergenic	-1944	NM_001896	1459		NM_001896	ENSG00000070770	CSNK2A2	CK2A2|CK2alpha'|CSNK2A1	casein kinase 2 alpha 2	protein-coding
232396	chr9	135989101	135989450	+	0	NA	Intergenic	Intergenic	-27902	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
93616	chr17	19154601	19155030	+	0	NA	non-coding (NR_160285, exon 4 of 4).2	non-coding (NR_160285, exon 4 of 4).2	7809	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
94866	chr17	31515651	31516000	+	0	NA	intron (NM_001346748, intron 1 of 12)	AmnSINE1|SINE|5S-Deu-L2	-19058	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
17856	chr1	159927801	159928780	+	0	NA	exon (NM_020789, exon 19 of 21)	exon (NM_020789, exon 19 of 21)	-2783	NM_003564	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
181167	chr5	39058371	39058830	+	0	NA	intron (NM_001285439, intron 2 of 38)	intron (NM_001285439, intron 2 of 38)	15799	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
70478	chr14	102078421	102079900	+	0	NA	Intergenic	AluSq|SINE|Alu	7884	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
159399	chr3	13451101	13452320	+	0	NA	Intergenic	L1ME2|LINE|L1	28343	NR_046690	100874101		NR_046690	ENSG00000244502	HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
119319	chr19	39897521	39898580	+	0	NA	intron (NM_003890, intron 11 of 28)	LTR41C|LTR|ERVL	36576	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
106185	chr18	10530771	10530930	+	0	NA	intron (NM_003826, intron 2 of 11)	intron (NM_003826, intron 2 of 11)	4823	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
155487	chr22	38504501	38505160	+	0	NA	intron (NM_006386, intron 1 of 12)	MIRb|SINE|MIR	1481	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
97575	chr17	44095651	44096400	+	0	NA	intron (NM_001382393, intron 3 of 26)	intron (NM_001382393, intron 3 of 26)	-19887	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
186090	chr5	134111251	134111350	+	0	NA	Intergenic	Intergenic	-3381	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
120843	chr19	45513751	45514130	+	0	NA	intron (NM_003370, intron 1 of 12)	L2a|LINE|L2	6461	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
213649	chr7	139767101	139767830	+	0	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	10533	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
205201	chr7	7762251	7762850	+	0	NA	intron (NM_001302350, intron 3 of 4)	intron (NM_001302350, intron 3 of 4)	-43943	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
58971	chr13	19858101	19858300	+	0	NA	intron (NM_001039649, intron 2 of 4)	AluJr|SINE|Alu	5436	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
81130	chr16	4390601	4391050	+	0	NA	intron (NM_001351729, intron 7 of 27)	MIRc|SINE|MIR	18977	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
95010	chr17	32384451	32384550	+	0	NA	Intergenic	Intergenic	34343	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
218572	chr8	55772451	55773850	+	0	NA	promoter-TSS (NM_001317902)	promoter-TSS (NM_001317902)	228	NM_001286657	137695		NM_152417	ENSG00000167904	TMEM68	DIESL|MGAT/DGAT	transmembrane protein 68	protein-coding
185945	chr5	132958721	132959180	+	0	NA	intron (NM_014423, intron 1 of 20)	intron (NM_014423, intron 1 of 20)	4684	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
122070	chr19	48717821	48718530	+	0	NA	intron (NM_001130915, intron 2 of 9)	intron (NM_001130915, intron 2 of 9)	-1154	NM_001297753	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
22281	chr1	212752771	212753330	+	0	NA	intron (NM_015471, intron 4 of 5)	intron (NM_015471, intron 4 of 5)	38727	NM_001297739	25936		NM_015471	ENSG00000117697	NSL1	C1orf48|DC8|MIS14	NSL1 component of MIS12 kinetochore complex	protein-coding
152889	chr22	22702571	22702730	+	0	NA	Intergenic	Intergenic	56338	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
58302	chr12	130869921	130870180	+	0	NA	Intergenic	AluSx|SINE|Alu	-1944	NM_001300796	5901		NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
222918	chr8	142910021	142910280	+	0	NA	TTS (NM_000498)	TTS (NM_000498)	7693	NM_000498	1585		NM_000498	ENSG00000179142	CYP11B2	ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo	cytochrome P450 family 11 subfamily B member 2	protein-coding
43967	chr11	93745021	93745280	+	0	NA	5' UTR (NM_001351985, exon 2 of 10)	5' UTR (NM_001351985, exon 2 of 10)	-1293	NM_001369406	28970		NM_014039	ENSG00000182919	C11orf54	MEEP|PTD012|PTOD012	chromosome 11 open reading frame 54	protein-coding
232368	chr9	135883521	135883780	+	0	NA	intron (NM_015447, intron 1 of 16)	intron (NM_015447, intron 1 of 16)	23896	NM_015447	157922		NM_015447	ENSG00000130559	CAMSAP1	CDCBM12	calmodulin regulated spectrin associated protein 1	protein-coding
39835	chr11	62125771	62125930	+	0	NA	intron (NM_001040694, intron 1 of 18)	L2a|LINE|L2	1839	NM_001040694	3619		NM_020238	ENSG00000149503	INCENP	-	inner centromere protein	protein-coding
51959	chr12	53755101	53755980	+	0	NA	intron (NR_104332, intron 2 of 2)	intron (NR_104332, intron 2 of 2)	1494	NR_104332	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
124047	chr19	55577271	55577630	+	0	NA	3' UTR (NM_152600, exon 2 of 2)	3' UTR (NM_152600, exon 2 of 2)	3398	NM_152600	163033		NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding
80858	chr16	3554501	3554700	+	0	NA	intron (NM_178844, intron 8 of 19)	intron (NM_178844, intron 8 of 19)	22803	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
55951	chr12	110004401	110004900	+	0	NA	intron (NM_033121, intron 1 of 14)	intron (NM_033121, intron 1 of 14)	5220	NM_033121	88455		NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
167544	chr3	129324051	129324350	+	0	NA	non-coding (NR_026991, exon 5 of 5)	non-coding (NR_026991, exon 5 of 5)	-7914	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
133771	chr2	127659921	127660180	+	0	NA	intron (NM_001161404, intron 1 of 9)	LTR12_|LTR|ERV1	4543	NM_017980	55679		NM_017980	ENSG00000072163	LIMS2	LGMD2W|MDRCMTT|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
159093	chr3	12473751	12473850	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	-10632	NM_001321277	80746		NM_025265	ENSG00000154743	TSEN2	PCH2B|SEN2|SEN2L	tRNA splicing endonuclease subunit 2	protein-coding
38608	chr11	46322951	46323050	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	-9926	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
119013	chr19	38903901	38904100	+	0	NA	intron (NR_040515, intron 1 of 4).2	AluSx4|SINE|Alu	4031	NR_040515	4793		NM_002503	ENSG00000104825	NFKBIB	IKBB|TRIP9	NFKB inhibitor beta	protein-coding
206711	chr7	36518671	36519030	+	0	NA	intron (NM_001177506, intron 20 of 21)	intron (NM_001177506, intron 20 of 21)	81270	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
103258	chr17	77630951	77631050	+	0	NA	Intergenic	AluSx3|SINE|Alu	84059	NR_040050	100507351		NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
104738	chr17	81666001	81668380	+	0	NA	promoter-TSS (NR_130938)	promoter-TSS (NR_130938)	453	NM_199287	339230		NM_199287	ENSG00000185298	CCDC137	RaRF	coiled-coil domain containing 137	protein-coding
90680	chr17	1720571	1721480	+	0	NA	intron (NM_001163673, intron 1 of 9)	intron (NM_001163673, intron 1 of 9)	-3679	NM_001163811	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
239507	chrY	56767101	56767800	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-186805	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
211940	chr7	112470921	112471530	+	0	NA	intron (NR_120333, intron 8 of 11)	MIRb|SINE|MIR	-9628	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
109509	chr19	836401	837330	+	0	NA	Intergenic	CpG	-4134	NM_002777	5657		NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
113723	chr19	10463001	10463200	+	0	NA	intron (NM_001111307, intron 13 of 14)	AluSx1|SINE|Alu	10168	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
62139	chr13	95704521	95705050	+	0	NA	intron (NM_006260, intron 1 of 11)	ERVL-E-int|LTR|ERVL	27646	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
180630	chr5	16673271	16673850	+	0	NA	intron (NM_012334, intron 36 of 40)	intron (NM_012334, intron 36 of 40)	-56502	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
69	chr1	283501	283700	+	0	NA	Intergenic	Intergenic	-77003	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
60062	chr13	33526601	33526850	+	0	NA	intron (NM_001243476, intron 3 of 17)	MIR|SINE|MIR	150069	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
142164	chr20	2831501	2832380	+	0	NA	Intergenic	Charlie11|DNA|hAT-Charlie	8715	NM_022760	64773		NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
161575	chr3	42879101	42879300	+	0	NA	Intergenic	AluJb|SINE|Alu	-3321	NM_004391	1582		NM_004391	ENSG00000180432	CYP8B1	CP8B|CYP12|CYPVIIIB1	cytochrome P450 family 8 subfamily B member 1	protein-coding
80151	chr16	2092701	2093280	+	0	NA	exon (NM_000296, exon 38 of 46)	exon (NM_000296, exon 38 of 46)	1554	NR_135175	105371049		NR_135175	ENSG00000259933	PKD1-AS1	-	PKD1 antisense RNA 1	ncRNA
173818	chr4	18023921	18024600	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-2385	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
17391	chr1	156616851	156617150	+	0	NA	intron (NR_135113, intron 1 of 1)	AluJb|SINE|Alu	-2415	NM_021817	60484		NM_021817	ENSG00000132702	HAPLN2	BRAL1	hyaluronan and proteoglycan link protein 2	protein-coding
7852	chr1	36367181	36368200	+	0	NA	intron (NM_001282547, intron 1 of 10)	intron (NM_001282547, intron 1 of 10)	18234	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
216264	chr8	12444901	12445900	+	0	NA	intron (NR_040092, intron 4 of 5)	LTR12C|LTR|ERV1	8387	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
150885	chr21	44135601	44135830	+	0	NA	intron (NM_198155, intron 2 of 5).2	intron (NM_198155, intron 2 of 5).2	2032	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
40634	chr11	64718801	64719480	+	0	NA	intron (NM_015080, intron 1 of 22)	intron (NM_015080, intron 1 of 22)	4057	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
126502	chr2	28408271	28408430	+	0	NA	intron (NM_005253, intron 2 of 3)	intron (NM_005253, intron 2 of 3)	-13678	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
3086	chr1	12193601	12193800	+	0	NA	intron (NM_001066, intron 6 of 9)	intron (NM_001066, intron 6 of 9)	1987	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
113624	chr19	10321051	10321350	+	0	NA	exon (NM_001366174, exon 8 of 14)	exon (NM_001366174, exon 8 of 14)	-5185	NM_001031734	112812		NM_080665	ENSG00000267673	FDX2	FDX1L|MEOAL	ferredoxin 2	protein-coding
234435	chrX	16864501	16864700	+	0	NA	intron (NM_002893, intron 2 of 11)	L3|LINE|CR1	5263	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
235033	chrX	40066671	40067030	+	0	NA	intron (NM_001123384, intron 5 of 13)	intron (NM_001123384, intron 5 of 13)	31108	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
82974	chr16	21952421	21953930	+	0	NA	promoter-TSS (NM_003366)	promoter-TSS (NM_003366)	-186	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
219289	chr8	68022351	68022450	+	0	NA	intron (NM_024870, intron 4 of 39)	intron (NM_024870, intron 4 of 39)	70354	NM_024870	80243		NM_024870	ENSG00000046889	PREX2	DEP.2|DEPDC2|P-REX2|PPP1R129	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2	protein-coding
83260	chr16	23949701	23951130	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	114432	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
158180	chr22	50222871	50223030	+	0	NA	intron (NM_020461, intron 13 of 24)	intron (NM_020461, intron 13 of 24)	21939	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
12929	chr1	110667721	110668100	+	0	NA	intron (NR_109845, intron 2 of 2)	intron (NR_109845, intron 2 of 2)	3865	NR_109846	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
116067	chr19	17231201	17231600	+	0	NA	TTS (NM_005234)	TTS (NM_005234)	5174	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
140509	chr2	233207621	233207880	+	0	NA	3' UTR (NM_005541, exon 27 of 27).2	3' UTR (NM_005541, exon 27 of 27).2	-43821	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
15432	chr1	150283401	150284180	+	0	NA	intron (NM_001300838, intron 2 of 5)	intron (NM_001300838, intron 2 of 5)	1236	NM_001300838	148523		NM_144697	ENSG00000159208	CIART	C1orf51|CHRONO|GM129	circadian associated repressor of transcription	protein-coding
141111	chr2	238713201	238713400	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	134607	NR_157851	100287387		NR_157851		LOC100287387	-	uncharacterized LOC100287387	ncRNA
111190	chr19	3434551	3436450	+	0	NA	intron (NM_205843, intron 6 of 10)	intron (NM_205843, intron 6 of 10)	45025	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
151110	chr21	44870151	44871150	+	0	NA	intron (NM_004339, intron 1 of 5)	intron (NM_004339, intron 1 of 5)	3040	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
123921	chr19	55360421	55361250	+	0	NA	intron (NM_001145402, intron 7 of 10)	intron (NM_001145402, intron 7 of 10)	2425	NM_001145402	284418		NM_001145402	ENSG00000180043	GARIN5B	C19orf16|FAM71E2	golgi associated RAB2 interactor family member 5B	protein-coding
68557	chr14	89367221	89367480	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	49883	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
64962	chr14	36315551	36315650	+	0	NA	intron (NM_016586, intron 2 of 8)	intron (NM_016586, intron 2 of 8)	5037	NM_001308110	51562		NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
224244	chr9	5851071	5851880	+	0	NA	Intergenic	Intergenic	-18358	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
211696	chr7	106732301	106732500	+	0	NA	Intergenic	Intergenic	-71242	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
83295	chr16	24151221	24152230	+	0	NA	intron (NM_212535, intron 9 of 16)	intron (NM_212535, intron 9 of 16)	-51391	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
34551	chr10	133111371	133111730	+	0	NA	intron (NM_001291085, intron 2 of 3)	intron (NM_001291085, intron 2 of 3)	9304	NM_001291085	84435		NM_032422	ENSG00000197177	ADGRA1	GPR123	adhesion G protein-coupled receptor A1	protein-coding
15254	chr1	149628421	149628730	+	0	NA	intron (NR_111950, intron 1 of 8)	LTR33|LTR|ERVL	21563	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
210593	chr7	100381101	100381300	+	0	NA	intron (NM_178273, intron 2 of 4)	AluY|SINE|Alu	7713	NM_013439	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
136681	chr2	181106721	181107380	+	0	NA	Intergenic	Intergenic	-16787	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
161462	chr3	42216821	42217700	+	0	NA	intron (NM_001042646, intron 14 of 15)	intron (NM_001042646, intron 14 of 15)	46687	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
199159	chr6	111737051	111737600	+	0	NA	intron (NM_002037, intron 3 of 13)	MER21B|LTR|ERVL	21806	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
148181	chr20	63542251	63542350	+	0	NA	exon (NM_080823, exon 5 of 8)	exon (NM_080823, exon 5 of 8)	-4924	NM_005975	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
69374	chr14	94027571	94027930	+	0	NA	intron (NM_023112, intron 1 of 5)	intron (NM_023112, intron 1 of 5)	1410	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
154500	chr22	35691351	35691850	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-26272	NM_030642	80831		NM_030642	ENSG00000128313	APOL5	APOL-V|APOLV	apolipoprotein L5	protein-coding
162643	chr3	48836301	48836500	+	0	NA	intron (NM_004157, intron 1 of 10)	AluSx3|SINE|Alu	11474	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
22806	chr1	224618021	224618850	+	0	NA	intron (NM_152495, intron 1 of 5)	intron (NM_152495, intron 1 of 5)	2118	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
20363	chr1	197919801	197920680	+	0	NA	intron (NM_020204, intron 2 of 4)	intron (NM_020204, intron 2 of 4)	2868	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
4029	chr1	18942421	18942950	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	13991	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
78966	chr15	101408051	101408350	+	0	NA	intron (NM_138319, intron 6 of 20)	intron (NM_138319, intron 6 of 20)	73763	NR_132373	105371027		NR_132373	ENSG00000259764	PCSK6-AS1	-	PCSK6 antisense RNA 1	ncRNA
44852	chr11	114156751	114157050	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	93689	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
198541	chr6	106552101	106552900	+	0	NA	intron (NM_001371242, intron 15 of 21)	AluSz|SINE|Alu	40645	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
49230	chr12	19220201	19220440	+	0	NA	intron (NM_001256787, intron 1 of 25)	intron (NM_001256787, intron 1 of 25)	14995	NM_001256787	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
113170	chr19	8393321	8394300	+	0	NA	intron (NM_004218, intron 1 of 4)	intron (NM_004218, intron 1 of 4)	-3119	NR_038237	100507567		NR_038237	ENSG00000269386	RAB11B-AS1	MIR4999HG	RAB11B antisense RNA 1	ncRNA
48404	chr12	9655821	9656480	+	0	NA	intron (NR_046447, intron 3 of 3)	intron (NR_046447, intron 3 of 3)	8103	NR_002814	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
55248	chr12	101939801	101940080	+	0	NA	Intergenic	Intergenic	62360	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
26061	chr10	12681271	12681430	+	0	NA	intron (NM_153498, intron 3 of 10)	intron (NM_153498, intron 3 of 10)	-28153	NR_039701	100616320		NR_039701	ENSG00000283699	MIR4481	-	microRNA 4481	ncRNA
115306	chr19	14688451	14688750	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-1448	NM_001352244	84449		NM_032433	ENSG00000160961	ZNF333	-	zinc finger protein 333	protein-coding
213676	chr7	140059171	140059880	+	0	NA	intron (NR_130117, intron 1 of 10)	intron (NR_130117, intron 1 of 10)	3426	NM_022750	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
222692	chr8	141271471	141271830	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	17083	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
181239	chr5	39196571	39196950	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	22803	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
208691	chr7	73238351	73238980	+	0	NA	Intergenic	MIRb|SINE|MIR	18026	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
15615	chr1	150617201	150617600	+	0	NA	Intergenic	AluSq|SINE|Alu	11733	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
7382	chr1	32890071	32890230	+	0	NA	intron (NM_002143, intron 2 of 3)	MIRc|SINE|MIR	3659	NM_002143	3208		NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
30438	chr10	79063501	79063750	+	0	NA	intron (NR_024431, intron 3 of 9)	intron (NR_024431, intron 3 of 9)	3823	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
89455	chr16	89017951	89018250	+	0	NA	Intergenic	Intergenic	-40893	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
151069	chr21	44766721	44766980	+	0	NA	Intergenic	Intergenic	34970	NM_182688	7327		NM_003343	ENSG00000184787	UBE2G2	UBC7	ubiquitin conjugating enzyme E2 G2	protein-coding
209035	chr7	74606101	74606730	+	0	NA	Intergenic	Intergenic	10447	NR_162116	113218504		NR_162116		MIR10525	-	microRNA 10525	ncRNA
81721	chr16	11265071	11265230	+	0	NA	Intergenic	Intergenic	4175	NM_005425	7142		NM_005425	ENSG00000178279	TNP2	TP2	transition protein 2	protein-coding
85729	chr16	56644551	56644650	+	0	NA	intron (NR_003658, intron 2 of 2)	intron (NR_003658, intron 2 of 2)	796	NR_003658	326343		NM_175620	ENSG00000291095	MT1DP	MTM	metallothionein 1D, pseudogene	pseudo
15774	chr1	151175851	151176580	+	0	NA	promoter-TSS (NM_013353)	promoter-TSS (NM_013353)	-234	NM_013353	29765		NM_013353	ENSG00000163157	TMOD4	SK-TMOD	tropomodulin 4	protein-coding
99284	chr17	49760001	49760200	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	4031	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
144501	chr20	35667021	35667630	+	0	NA	TTS (NM_001198989)	TTS (NM_001198989)	-2425	NM_152927	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
197246	chr6	69815921	69816900	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-19400	NM_018368	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
126935	chr2	33344271	33344530	+	0	NA	intron (NM_001166265, intron 21 of 29)	L2c|LINE|L2	-74116	NR_039628	100616136		NR_039628	ENSG00000283591	MIR4430	-	microRNA 4430	ncRNA
80410	chr16	2605371	2605930	+	0	NA	intron (NR_015441, intron 1 of 3)	AluY|SINE|Alu	2266	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
187889	chr5	148810751	148811230	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-15621	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
131460	chr2	96343151	96343250	+	0	NA	exon (NM_001281710, exon 5 of 18)	exon (NM_001281710, exon 5 of 18)	7434	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
195934	chr6	41909571	41910130	+	0	NA	intron (NM_001305455, intron 1 of 2)	L1ME3E|LINE|L1	11093	NM_001305456	9477		NM_004275	ENSG00000124641	MED20	PRO0213|SRB2|TRFP	mediator complex subunit 20	protein-coding
227647	chr9	92959621	92959880	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	-4211	NM_001286993	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
92802	chr17	16004471	16005130	+	0	NA	intron (NM_017775, intron 6 of 9)	intron (NM_017775, intron 6 of 9)	4976	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
163595	chr3	51977471	51978580	+	0	NA	exon (NM_015407, exon 2 of 5)	exon (NM_015407, exon 2 of 5)	2961	NM_001316331	100526760		NM_001316331	ENSG00000114786	ABHD14A-ACY1	-	ABHD14A-ACY1 readthrough	protein-coding
214484	chr7	150402851	150403150	+	0	NA	Intergenic	Intergenic	-2752	NR_027237	728743		NM_001080852	ENSG00000284691	LOC728743	-	zinc finger domain-containing protein LOC728743	protein-coding
77330	chr15	82513151	82515050	+	0	NA	promoter-TSS (NR_026811)	promoter-TSS (NR_026811)	-101	NR_103496	80154		NM_025084		GOLGA2P10	-	GOLGA2 pseudogene 10	pseudo
89937	chr16	89736801	89738080	+	0	NA	TTS (NM_000135)	TTS (NM_000135)	15903	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
50233	chr12	46235071	46235680	+	0	NA	intron (NM_001278387, intron 4 of 17)	intron (NM_001278387, intron 4 of 17)	31141	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
206442	chr7	32871701	32872100	+	0	NA	intron (NM_015483, intron 3 of 3)	intron (NM_015483, intron 3 of 3)	19860	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
162744	chr3	49050051	49050350	+	0	NA	intron (NM_001320580, intron 4 of 10)	AluYk11|SINE|Alu	-20802	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
107372	chr18	46027771	46028650	+	0	NA	intron (NM_024430, intron 2 of 14)	CpG	44050	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
216786	chr8	22516571	22517000	+	0	NA	intron (NM_005605, intron 6 of 13)	Tigger17a|DNA|TcMar-Tigger	-35142	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
153048	chr22	23276221	23276480	+	0	NA	intron (NM_021574, intron 8 of 21)	AluY|SINE|Alu	13583	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
63857	chr14	21557251	21558100	+	0	NA	Intergenic	UCON105|Unknown|Unknown	13069	NM_001005465	26533		NM_001005465	ENSG00000169208	OR10G3	OR14-40	olfactory receptor family 10 subfamily G member 3	protein-coding
62337	chr13	99083551	99084480	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	2679	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
35443	chr11	1448921	1450130	+	0	NA	intron (NM_001256630, intron 12 of 19)	intron (NM_001256630, intron 12 of 19)	31361	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
131791	chr2	98504571	98504980	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	58765	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
229449	chr9	121550471	121550980	+	0	NA	Intergenic	CpG	-16377	NM_032552	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
81883	chr16	11680121	11680730	+	0	NA	intron (NR_136674, intron 8 of 8)	intron (NR_136674, intron 8 of 8)	11970	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
27038	chr10	26944251	26944650	+	0	NA	Intergenic	Intergenic	-2449	NR_026795	387644		NR_026795	ENSG00000290706	FAM238C	C10orf51|LINC00202|LINC00202-1|NCRNA00202|bB27G4.1	family with sequence similarity 238 member C	ncRNA
14985	chr1	148048371	148049580	+	0	NA	promoter-TSS (NR_146087)	promoter-TSS (NR_146087)	-327	NR_146087	728920		NR_146087		PDE4DIPP1	PDE4DIP1	PDE4DIP pseudogene 1	pseudo
19639	chr1	180194601	180195000	+	0	NA	intron (NM_001004128, intron 11 of 12)	intron (NM_001004128, intron 11 of 12)	-35464	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
149958	chr21	36381901	36382580	+	0	NA	Intergenic	L1ME2|LINE|L1	-3152	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
23957	chr1	235143901	235144300	+	0	NA	intron (NR_144490, intron 5 of 9)	AluJb|SINE|Alu	-15263	NM_014765	9804		NM_014765	ENSG00000173726	TOMM20	MAS20|MOM19|TOM20	translocase of outer mitochondrial membrane 20	protein-coding
238195	chrX	136954951	136955050	+	0	NA	Intergenic	Intergenic	-74220	NR_028476	27316		NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|MRXSG|MRXSH|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein X-linked	protein-coding
83486	chr16	27407901	27409130	+	0	NA	intron (NM_181079, intron 2 of 9)	intron (NM_181079, intron 2 of 9)	6341	NM_181078	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
176659	chr4	100005971	100006130	+	0	NA	intron (NR_125923, intron 1 of 3)	L1PA2|LINE|L1	55556	NR_125923	256880		NR_002799		H2AZ1-DT	-	H2AZ1 divergent transcript	ncRNA
195078	chr6	35560071	35560430	+	0	NA	Intergenic	LTR13|LTR|ERVK	-47354	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
46826	chr11	130915021	130915280	+	0	NA	exon (NM_001347919, exon 1 of 10)	exon (NM_001347919, exon 1 of 10)	1329	NM_001347919	399979		NM_014758	ENSG00000120451	SNX19	CHET8	sorting nexin 19	protein-coding
149608	chr21	33350771	33351330	+	0	NA	intron (NM_001384503, intron 8 of 10)	MIRb|SINE|MIR	26080	NM_001384503	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
76527	chr15	75104901	75105380	+	0	NA	Intergenic	Intergenic	61854	NM_001301105	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
120221	chr19	42307771	42307930	+	0	NA	intron (NM_199285, intron 1 of 2)	AluY|SINE|Alu	-5050	NM_001145940	5050		NM_002573	ENSG00000079462	PAFAH1B3	PAFAHG	platelet activating factor acetylhydrolase 1b catalytic subunit 3	protein-coding
176909	chr4	102805301	102806000	+	0	NA	intron (NM_003340, intron 4 of 7)	AluSz6|SINE|Alu	20210	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
104390	chr17	81038371	81038530	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	3299	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
100958	chr17	64503351	64503900	+	0	NA	intron (NM_004396, intron 5 of 12)	intron (NM_004396, intron 5 of 12)	-2312	NR_039969	100616408		NR_039969	ENSG00000284368	MIR5047	-	microRNA 5047	ncRNA
10085	chr1	58854701	58854900	+	0	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	69649	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
41512	chr11	66259901	66261000	+	0	NA	intron (NM_001134774, intron 2 of 14)	intron (NM_001134774, intron 2 of 14)	2747	NM_001134774	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
105831	chr18	2979751	2980050	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	32047	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
147705	chr20	62353801	62354400	+	0	NA	intron (NR_109922, intron 1 of 2)	intron (NR_109922, intron 1 of 2)	1090	NR_109922	101928158		NR_109922	ENSG00000228812	LAMA5-AS1	-	LAMA5 antisense RNA 1	ncRNA
42116	chr11	67608401	67608800	+	0	NA	exon (NM_007103, exon 3 of 10)	exon (NM_007103, exon 3 of 10)	1664	NM_001166102	4723		NM_007103	ENSG00000167792	NDUFV1	CI-51K|CI51KD|MC1DN4|UQOR1	NADH:ubiquinone oxidoreductase core subunit V1	protein-coding
192126	chr6	16751671	16751830	+	0	NA	intron (NR_152112, intron 1 of 1)	intron (NR_152112, intron 1 of 1)	8434	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
129424	chr2	69385671	69385930	+	0	NA	intron (NM_001244710, intron 1 of 19)	intron (NM_001244710, intron 1 of 19)	1427	NM_002056	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
89306	chr16	88716971	88717330	+	0	NA	promoter-TSS (NR_039873)	promoter-TSS (NR_039873)	-813	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
207973	chr7	55344851	55345250	+	0	NA	Intergenic	CpG	-20287	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
18754	chr1	167494871	167495600	+	0	NA	intron (NM_001378515, intron 1 of 8)	MIRb|SINE|MIR	23294	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
36844	chr11	10302271	10303400	+	0	NA	Intergenic	CpG	-2238	NM_001124	133		NM_001124	ENSG00000148926	ADM	AM|PAMP	adrenomedullin	protein-coding
105516	chr17	83110121	83111130	+	0	NA	Intergenic	Intergenic	29479	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
142932	chr20	18566971	18568230	+	0	NA	intron (NM_001348958, intron 1 of 1)	CpG	168	NM_001348957	388789		NM_001348957	ENSG00000232388	SMIM26	LINC00493	small integral membrane protein 26	protein-coding
100608	chr17	63478671	63479230	+	0	NA	intron (NM_001382700, intron 2 of 21)	intron (NM_001382700, intron 2 of 21)	1889	NM_000789	1636		NM_000789	ENSG00000159640	ACE	ACE1|CD143|DCP|DCP1	angiotensin I converting enzyme	protein-coding
17021	chr1	156056251	156056350	+	0	NA	intron (NM_001145264, intron 2 of 2)	AluJb|SINE|Alu	1518	NM_001145264	28956		NM_014017	ENSG00000116586	LAMTOR2	ENDAP|HSPC003|MAPBPIP|MAPKSP1AP|ROBLD3|Ragulator2|p14	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding
54797	chr12	94367901	94368300	+	0	NA	TTS (NM_001368042)	TTS (NM_001368042)	91767	NM_001346457	51134		NM_016122	ENSG00000173588	CEP83	CCDC41|NPHP18|NY-REN-58	centrosomal protein 83	protein-coding
95641	chr17	37816271	37816430	+	0	NA	Intergenic	AluSx4|SINE|Alu	68393	NR_024178	284100		NM_001129906	ENSG00000290810	YWHAEP7	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7	pseudo
91649	chr17	5484451	5484750	+	0	NA	intron (NR_130906, intron 2 of 5)	MamRep605|LTR?|LTR?	1578	NR_130906	51009		NM_016041	ENSG00000072849	DERL2	CGI-101|DERtrin-2|F-LAN-1|F-LANa|FLANa|derlin-2	derlin 2	protein-coding
73701	chr15	45114251	45115080	+	0	NA	promoter-TSS (NM_014080)	promoter-TSS (NM_014080)	339	NM_207581	405753		NM_207581	ENSG00000140274	DUOXA2	SIMNIPHOM|TDH5	dual oxidase maturation factor 2	protein-coding
62906	chr13	110913021	110913690	+	0	NA	intron (NR_104586, intron 1 of 4)	intron (NR_104586, intron 1 of 4)	1714	NM_017664	55608		NM_017664	ENSG00000088448	ANKRD10	-	ankyrin repeat domain 10	protein-coding
232431	chr9	136100351	136100650	+	0	NA	Intergenic	Intergenic	-5211	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
6655	chr1	29033621	29034150	+	0	NA	intron (NM_001376013, intron 9 of 20)	MIRc|SINE|MIR	88616	NM_001171868	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
184700	chr5	109191271	109191500	+	0	NA	non-coding (NR_146155, exon 20 of 20)	non-coding (NR_146155, exon 20 of 20)	134984	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
151363	chr21	45818851	45819450	+	0	NA	intron (NM_001348243, intron 3 of 15)	L1MC1|LINE|L1	17269	NR_038876	100129027		NR_038876		PCBP3-AS1	-	PCBP3 antisense RNA 1	ncRNA
8180	chr1	39561871	39562030	+	0	NA	intron (NM_003819, intron 14 of 15)	intron (NM_003819, intron 14 of 15)	-2252	NR_144356	728448		NR_003929	ENSG00000291129	PPIEL	PPIEP1	peptidylprolyl isomerase E like (pseudogene)	pseudo
23435	chr1	228410671	228410900	+	0	NA	intron (NM_001134855, intron 4 of 5)	MLT1B|LTR|ERVL-MaLR	-3950	NM_145214	81559		NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
79875	chr16	1529421	1529880	+	0	NA	intron (NM_001256541, intron 1 of 3)	intron (NM_001256541, intron 1 of 3)	972	NM_001256541	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
230890	chr9	129217721	129218300	+	0	NA	Intergenic	Intergenic	-39749	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
41388	chr11	66006121	66006700	+	0	NA	Intergenic	Intergenic	3907	NM_003860	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
138945	chr2	218250571	218250950	+	0	NA	intron (NM_152862, intron 10 of 10)	intron (NM_152862, intron 10 of 10)	-8736	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
58124	chr12	124894601	124895000	+	0	NA	Intergenic	L1MB5|LINE|L1	19850	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
15930	chr1	151800371	151801180	+	0	NA	3' UTR (NM_001004432, exon 2 of 2)	3' UTR (NM_001004432, exon 2 of 2)	4644	NM_001004432	339398		NM_001004432	ENSG00000213171	LINGO4	DAAT9248|LRRN6D|PRO34002	leucine rich repeat and Ig domain containing 4	protein-coding
42323	chr11	68478071	68478230	+	0	NA	intron (NM_001352362, intron 2 of 24)	AluSq4|SINE|Alu	17398	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
237392	chrX	119502701	119503300	+	0	NA	Intergenic	Intergenic	-33880	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
38807	chr11	47287801	47288000	+	0	NA	intron (NM_001376662, intron 15 of 30)	AluY|SINE|Alu	-15790	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
166515	chr3	114334121	114334400	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-17551	NR_038993	100131117		NR_038993	ENSG00000241560	ZBTB20-AS1	-	ZBTB20 antisense RNA 1	ncRNA
69864	chr14	99271701	99272700	+	0	NA	promoter-TSS (NM_138576)	promoter-TSS (NM_138576)	-3	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
172403	chr4	1790351	1790680	+	0	NA	Intergenic	Intergenic	-2778	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
80657	chr16	3009721	3010180	+	0	NA	Intergenic	Intergenic	-2973	NM_020982	9080		NM_020982	ENSG00000213937	CLDN9	DFNB116	claudin 9	protein-coding
64801	chr14	34876671	34877180	+	0	NA	TTS (NR_160776)	TTS (NR_160776)	-1565	NM_013448	11177		NM_013448	ENSG00000198604	BAZ1A	ACF1|WALp1|WCRF180|hACF1	bromodomain adjacent to zinc finger domain 1A	protein-coding
89548	chr16	89209271	89209430	+	0	NA	Intergenic	Intergenic	-7672	NM_001384764	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
42475	chr11	69840801	69841000	+	0	NA	Intergenic	Intergenic	-21484	NM_005247	2248		NM_005247	ENSG00000186895	FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
64495	chr14	24327471	24328350	+	0	NA	intron (NM_001198592, intron 11 of 25).2	LTR13|LTR|ERVK	7161	NM_139247	196883		NM_139247	ENSG00000129467	ADCY4	AC4	adenylate cyclase 4	protein-coding
44918	chr11	115495571	115495930	+	0	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	8665	NM_001301045	23705		NM_014333	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
235682	chrX	48652071	48652430	+	0	NA	Intergenic	Intergenic	-31549	NM_000377	7454		NM_000377	ENSG00000015285	WAS	IMD2|SCNX|THC|THC1|WASP|WASPA	WASP actin nucleation promoting factor	protein-coding
2638	chr1	10324671	10325630	+	0	NA	intron (NM_001365952, intron 26 of 48)	intron (NM_001365952, intron 26 of 48)	26184	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
120433	chr19	44111851	44112300	+	0	NA	intron (NR_033341, intron 1 of 1)	LTR9|LTR|ERV1	1108	NR_033341	100379224		NR_033341	ENSG00000186019	ZNF225-AS1	-	ZNF225 and ZNF224 antisense RNA 1	ncRNA
112455	chr19	6380271	6380500	+	0	NA	exon (NM_002096, exon 13 of 13)	exon (NM_002096, exon 13 of 13)	-4469	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
118724	chr19	38256121	38256780	+	0	NA	promoter-TSS (NM_001243947)	promoter-TSS (NM_001243947)	-76	NM_033256	94274		NM_033256	ENSG00000167641	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1 regulatory inhibitor subunit 14A	protein-coding
116048	chr19	17210821	17211080	+	0	NA	intron (NM_004145, intron 38 of 39)	intron (NM_004145, intron 38 of 39)	-4407	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
64108	chr14	22815621	22815880	+	0	NA	promoter-TSS (NM_003982)	promoter-TSS (NM_003982)	121	NM_001126105	9056		NM_003982	ENSG00000155465	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	solute carrier family 7 member 7	protein-coding
34237	chr10	130137951	130138050	+	0	NA	intron (NM_001199868, intron 1 of 11)	AluJb|SINE|Alu	1591	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
231258	chr9	129996721	129997180	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluJb|SINE|Alu	46239	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
68231	chr14	76946901	76947850	+	0	NA	Intergenic	Intergenic	-12263	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
64460	chr14	24242021	24243930	+	0	NA	promoter-TSS (NM_001099274)	promoter-TSS (NM_001099274)	-301	NM_012461	26277		NM_012461	ENSG00000092330	TINF2	DKCA3|TIN2	TERF1 interacting nuclear factor 2	protein-coding
201771	chr6	149955921	149956400	+	0	NA	Intergenic	Intergenic	-7783	NM_001317089	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
160008	chr3	18390171	18390680	+	0	NA	intron (NM_001322873, intron 7 of 10)	intron (NM_001322873, intron 7 of 10)	34914	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
104529	chr17	81246521	81247630	+	0	NA	intron (NM_001037984, intron 14 of 15)	intron (NM_001037984, intron 14 of 15)	7161	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
234527	chrX	19626851	19627150	+	0	NA	intron (NM_001353892, intron 9 of 17)	intron (NM_001353892, intron 9 of 17)	43999	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
156170	chr22	40216021	40216800	+	0	NA	intron (NM_015088, intron 1 of 20)	L2b|LINE|L2	38485	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
3037	chr1	12144801	12145230	+	0	NA	TTS (NM_001243)	TTS (NM_001243)	-21928	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
27255	chr10	29685401	29685600	+	0	NA	intron (NM_003174, intron 2 of 35)	L1PA15|LINE|L1	50301	NM_003174	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
65120	chr14	44913521	44913880	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1783	NR_110050	101927418		NR_110050	ENSG00000258949	LOC101927418	-	uncharacterized LOC101927418	ncRNA
29328	chr10	69404771	69405500	+	0	NA	intron (NM_001057, intron 4 of 4)	intron (NM_001057, intron 4 of 4)	11783	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
40018	chr11	62664471	62667030	+	0	NA	promoter-TSS (NR_104414)	promoter-TSS (NR_104414)	328	NR_004390	692158		NR_004390	ENSG00000206597	SNORA57	U99	small nucleolar RNA, H/ACA box 57	snoRNA
105712	chr18	2695051	2695550	+	0	NA	intron (NM_015295, intron 8 of 47)	intron (NM_015295, intron 8 of 47)	39574	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
41716	chr11	66652851	66653750	+	0	NA	intron (NM_001198844, intron 2 of 2)	Tigger2a|DNA|TcMar-Tigger	14597	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
11315	chr1	89351901	89352480	+	0	NA	Intergenic	MIRb|SINE|MIR	-11687	NM_001320257	163351		NM_198460	ENSG00000183347	GBP6	-	guanylate binding protein family member 6	protein-coding
97603	chr17	44119151	44119700	+	0	NA	intron (NM_005474, intron 1 of 26)	intron (NM_005474, intron 1 of 26)	3513	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
178925	chr4	158825721	158826180	+	0	NA	exon (NM_001323916, exon 2 of 17)	exon (NM_001323916, exon 2 of 17)	20111	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
232223	chr9	134374271	134374430	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-4945	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
18046	chr1	160619821	160620080	+	0	NA	intron (NM_003037, intron 4 of 6)	MIRb|SINE|MIR	27094	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
225501	chr9	35661751	35662730	+	0	NA	TTS (NM_001195217)	TTS (NM_001195217)	2955	NM_032818	84904		NM_032818	ENSG00000137135	ARHGEF39	C9orf100	Rho guanine nucleotide exchange factor 39	protein-coding
138671	chr2	212990771	212990930	+	0	NA	Intergenic	Intergenic	-64514	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
146171	chr20	48737601	48738150	+	0	NA	intron (NM_020820, intron 3 of 39)	MLT1K|LTR|ERVL-MaLR	90124	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
215554	chr7	158802201	158802600	+	0	NA	intron (NM_020728, intron 1 of 21)	AluSz6|SINE|Alu	27109	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
179235	chr4	174213901	174214730	+	0	NA	intron (NR_125896, intron 1 of 4)	CpG	6083	NR_125896	101928509		NR_125896	ENSG00000248174	LINC02268	-	long intergenic non-protein coding RNA 2268	ncRNA
187253	chr5	141420921	141421280	+	0	NA	promoter-TSS (NM_032092)	promoter-TSS (NM_032092)	49	NM_032091	56105		NM_018914	ENSG00000253873	PCDHGA11	PCDH-GAMMA-A11	protocadherin gamma subfamily A, 11	protein-coding
118623	chr19	37079851	37079950	+	0	NA	intron (NM_001329519, intron 1 of 4)	AluSq|SINE|Alu	1467	NM_001329524	147923		NM_144689	ENSG00000197050	ZNF420	APAK	zinc finger protein 420	protein-coding
124068	chr19	55603621	55603980	+	0	NA	TTS (NM_153219)	TTS (NM_153219)	-1847	NM_001195605	100507290		NM_001195605	ENSG00000261221	ZNF865	-	zinc finger protein 865	protein-coding
79020	chr16	61101	61300	+	0	NA	exon (NM_022450, exon 11 of 18)	exon (NM_022450, exon 11 of 18)	7372	NM_024571	79622		NM_024571	ENSG00000161981	SNRNP25	C16orf33	small nuclear ribonucleoprotein U11/U12 subunit 25	protein-coding
102349	chr17	75505551	75505850	+	0	NA	intron (NM_001142643, intron 8 of 18)	intron (NM_001142643, intron 8 of 18)	4190	NM_001142643	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
232347	chr9	135500401	135501830	+	0	NA	non-coding (NR_051967, exon 2 of 5)	non-coding (NR_051967, exon 2 of 5)	433	NM_016034	51116		NM_016034	ENSG00000122140	MRPS2	CGI-91|COXPD36|MRP-S2|S2mt|uS2m	mitochondrial ribosomal protein S2	protein-coding
212271	chr7	123534181	123535900	+	0	NA	promoter-TSS (NR_104245)	promoter-TSS (NR_104245)	-376	NR_104245	154865		NM_178827	ENSG00000164675	IQUB	TRS4	IQ motif and ubiquitin domain containing	protein-coding
194793	chr6	34226651	34228000	+	0	NA	Intergenic	Intergenic	-9548	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
14059	chr1	120777521	120777980	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-27806	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
234845	chrX	24494621	24494880	+	0	NA	exon (NM_005391, exon 2 of 11)	exon (NM_005391, exon 2 of 11)	29464	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
236904	chrX	86014471	86015000	+	0	NA	intron (NM_001320959, intron 2 of 14)	Alu|SINE|Alu	32571	NM_001362518	1121		NM_000390	ENSG00000188419	CHM	DXS540|GGTA|HSD-32|REP-1|TCD	CHM Rab escort protein	protein-coding
36130	chr11	3109971	3110880	+	0	NA	intron (NM_145638, intron 6 of 20)	intron (NM_145638, intron 6 of 20)	-53002	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
138358	chr2	203939501	203939700	+	0	NA	intron (NM_012092, intron 1 of 4)	intron (NM_012092, intron 1 of 4)	2837	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123558	chr19	54416771	54417150	+	0	NA	intron (NM_020659, intron 1 of 13).4	CpG	1496	NM_020659	57348		NM_020659	ENSG00000167614	TTYH1	-	tweety family member 1	protein-coding
30793	chr10	84364671	84364830	+	0	NA	intron (NM_001284241, intron 1 of 2)	AluSx|SINE|Alu	36161	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
78282	chr15	90881171	90881330	+	0	NA	intron (NM_001382620, intron 15 of 15)	intron (NM_001382620, intron 15 of 15)	-3254	NM_002005	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
234370	chrX	15753721	15754430	+	0	NA	intron (NR_160544, intron 5 of 11)	MER4D|LTR|ERV1	15805	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
218749	chr8	58882821	58883080	+	0	NA	intron (NM_014729, intron 3 of 8)	intron (NM_014729, intron 3 of 8)	-223097	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
82828	chr16	21494901	21495280	+	0	NA	intron (NR_027155, intron 1 of 28)	intron (NR_027155, intron 1 of 28)	-6436	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
74757	chr15	63229471	63230050	+	0	NA	intron (NM_016530, intron 1 of 7)	AluSx|SINE|Alu	40154	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
129209	chr2	68219971	68220330	+	0	NA	intron (NM_000945, intron 1 of 5)	L1ME1|LINE|L1	32382	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
97069	chr17	42381551	42381880	+	0	NA	intron (NM_001369516, intron 1 of 23)	AluY|SINE|Alu	6727	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
137993	chr2	201250501	201251100	+	0	NA	intron (NM_033355, intron 2 of 9)	L1MC2|LINE|L1	-7235	NM_001080125	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
91341	chr17	4482621	4483000	+	0	NA	intron (NM_001320449, intron 8 of 10)	intron (NM_001320449, intron 8 of 10)	-16071	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
95349	chr17	35812121	35812700	+	0	NA	intron (NM_139215, intron 1 of 15).2	AluSp|SINE|Alu	2926	NM_003487	8148		NM_003487	ENSG00000270647	TAF15	Npl3|RBP56|TAF2N|TAFII68	TATA-box binding protein associated factor 15	protein-coding
102043	chr17	74866271	74866730	+	0	NA	non-coding (NR_047576, exon 4 of 12)	non-coding (NR_047576, exon 4 of 12)	2253	NM_001258016	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
82121	chr16	14711701	14712100	+	0	NA	intron (NM_001277324, intron 1 of 7)	intron (NM_001277324, intron 1 of 7)	211	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
94376	chr17	28928901	28929100	+	0	NA	intron (NM_020889, intron 2 of 8)	AluSg|SINE|Alu	2725	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
26303	chr10	14983351	14983650	+	0	NA	intron (NR_147060, intron 1 of 2)	SATR1|Satellite|Satellite	24112	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
236654	chrX	75785021	75785280	+	0	NA	5' UTR (NM_138703, exon 1 of 1)	5' UTR (NM_138703, exon 1 of 1)	104	NM_138703	139599		NM_138703	ENSG00000186675	MAGEE2	HCA3	MAGE family member E2	protein-coding
31242	chr10	91912801	91913480	+	0	NA	Intergenic	Intergenic	-3654	NM_152429	143282		NM_152429	ENSG00000174721	FGFBP3	C10orf13|FGF-BP3	fibroblast growth factor binding protein 3	protein-coding
181148	chr5	38556201	38557100	+	0	NA	promoter-TSS (NM_001127671)	promoter-TSS (NM_001127671)	-4	NM_001127671	3977		NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	LIF receptor subunit alpha	protein-coding
124096	chr19	55645101	55645730	+	0	NA	3' UTR (NM_016535, exon 2 of 2)	3' UTR (NM_016535, exon 2 of 2)	1766	NM_016535	51545		NM_016535	ENSG00000171425	ZNF581	HSPC189	zinc finger protein 581	protein-coding
100870	chr17	64320151	64320530	+	0	NA	3' UTR (NM_000442, exon 16 of 16)	3' UTR (NM_000442, exon 16 of 16)	-57080	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
106202	chr18	11623721	11623980	+	0	NA	Intergenic	L1MEg|LINE|L1	14292	NM_001282300	646000		NM_001282300	ENSG00000236396	SLC35G4	AMAC1L1|SLC35G4P	solute carrier family 35 member G4	protein-coding
45688	chr11	119051901	119052700	+	0	NA	exon (NM_001130991, exon 10 of 26).2	exon (NM_001130991, exon 10 of 26).2	4905	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
189173	chr5	171404721	171405100	+	0	NA	intron (NM_002520, intron 8 of 10)	intron (NM_002520, intron 8 of 10)	-14737	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
100345	chr17	59901201	59902400	+	0	NA	intron (NM_001272044, intron 2 of 15)	AluJb|SINE|Alu	8679	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
20001	chr1	185282771	185283130	+	0	NA	intron (NM_017673, intron 18 of 18)	MER21B|LTR|ERVL	34293	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
10959	chr1	84186071	84186230	+	0	NA	intron (NM_207578, intron 5 of 8)	MER65C|LTR|ERV1	4518	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
19331	chr1	173601601	173601800	+	0	NA	exon (NM_178527, exon 2 of 28)	exon (NM_178527, exon 2 of 28)	1372	NM_178527	284525		NM_178527	ENSG00000162753	SLC9C2	NHE11|SLC9A11	solute carrier family 9 member C2 (putative)	protein-coding
108175	chr18	62954451	62954750	+	0	NA	intron (NM_194449, intron 12 of 16)	intron (NM_194449, intron 12 of 16)	239059	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
37860	chr11	33773121	33773800	+	0	NA	intron (NM_012175, intron 1 of 10)	intron (NM_012175, intron 1 of 10)	1060	NM_012175	26273		NM_012175	ENSG00000110429	FBXO3	FBA|FBX3	F-box protein 3	protein-coding
159871	chr3	16810651	16811780	+	0	NA	Intergenic	Intergenic	-73740	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
86811	chr16	67846301	67847750	+	0	NA	promoter-TSS (NM_001322040)	promoter-TSS (NM_001322040)	92	NM_001322039	10204		NM_005796	ENSG00000102898	NUTF2	NTF-2|NTF2|PP15	nuclear transport factor 2	protein-coding
46447	chr11	128086551	128087050	+	0	NA	Intergenic	L1PA14|LINE|L1	-121966	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
180937	chr5	34916771	34916930	+	0	NA	intron (NM_018321, intron 1 of 9)	intron (NM_018321, intron 1 of 9)	1139	NM_018321	55299		NM_018321	ENSG00000113460	BRIX1	BRIX|BXDC2	biogenesis of ribosomes BRX1	protein-coding
6472	chr1	28327851	28327950	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1140	NM_001127350	54797		NM_017638	ENSG00000130772	MED18	SRB5|p28b	mediator complex subunit 18	protein-coding
202324	chr6	157314731	157315230	+	0	NA	intron (NM_018452, intron 3 of 3)	intron (NM_018452, intron 3 of 3)	8539	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
211647	chr7	106256421	106256680	+	0	NA	intron (NM_005746, intron 8 of 10)	MER47A|DNA|TcMar-Tigger	28433	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
194694	chr6	33690451	33690750	+	0	NA	intron (NM_002224, intron 51 of 57)	MIR|SINE|MIR	-7528	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
28189	chr10	44576821	44577170	+	0	NA	Intergenic	Intergenic	-191898	NM_000609	6387		NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1	C-X-C motif chemokine ligand 12	protein-coding
110459	chr19	2007721	2008430	+	0	NA	intron (NM_017797, intron 1 of 8)	AluSq|SINE|Alu	7639	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
9768	chr1	53411121	53411380	+	0	NA	Intergenic	Intergenic	28770	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
86118	chr16	57668171	57668530	+	0	NA	promoter-TSS (NM_001308360)	promoter-TSS (NM_001308360)	44	NM_001308360	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
216582	chr8	21990671	21990830	+	0	NA	intron (NM_001362802, intron 16 of 26)	intron (NM_001362802, intron 16 of 26)	-33384	NM_001286680	10361		NM_182795	ENSG00000158806	NPM2	-	nucleophosmin/nucleoplasmin 2	protein-coding
183169	chr5	75333951	75334680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2853	NM_001364187	3156		NM_000859	ENSG00000113161	HMGCR	LDLCQ3|LGMDR28|MYPLG	3-hydroxy-3-methylglutaryl-CoA reductase	protein-coding
237143	chrX	107118221	107119100	+	0	NA	promoter-TSS (NM_001324243)	promoter-TSS (NM_001324243)	-75	NR_136732	55285		NM_018301	ENSG00000089682	RBM41	-	RNA binding motif protein 41	protein-coding
37401	chr11	17207511	17208850	+	0	NA	promoter-TSS (NM_001321378)	promoter-TSS (NM_001321378)	-194	NM_001321380	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
37895	chr11	34058901	34059180	+	0	NA	intron (NM_203364, intron 2 of 17)	intron (NM_203364, intron 2 of 17)	7309	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
204544	chr7	4972221	4972500	+	0	NA	Intergenic	AluJr|SINE|Alu	-1625	NR_015449	441191		NR_015449	ENSG00000196204	RNF216P1	RNF216L|hCG2040556	ring finger protein 216 pseudogene 1	pseudo
24372	chr1	241638401	241638600	+	0	NA	intron (NM_001381856, intron 1 of 1)	intron (NM_001381856, intron 1 of 1)	1869	NM_001381853	1122		NM_001821	ENSG00000203668	CHML	REP2	CHM like Rab escort protein	protein-coding
149870	chr21	35475771	35475930	+	0	NA	intron (NR_073512, intron 1 of 2)	intron (NR_073512, intron 1 of 2)	104914	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
29964	chr10	73623721	73624180	+	0	NA	intron (NM_001350995, intron 1 of 21)	L2b|LINE|L2	2031	NM_001350995	159195		NM_152586	ENSG00000166348	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
236753	chrX	78534721	78534980	+	0	NA	Intergenic	Intergenic	124478	NM_152694	203430		NM_152694	ENSG00000179300	RTL3	Mar3|Mart3|SIRH9|ZCCHC5|ZHC5	retrotransposon Gag like 3	protein-coding
24901	chr10	1044851	1045330	+	0	NA	TTS (NR_024628)	TTS (NR_024628)	3796	NM_001317957	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
149345	chr21	29074801	29075250	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-1228	NM_001282909	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
66002	chr14	58239301	58241130	+	0	NA	Intergenic	Intergenic	-4590	NR_038123	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
12205	chr1	100390421	100390980	+	0	NA	intron (NM_001319210, intron 3 of 16)	intron (NM_001319210, intron 3 of 16)	38194	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
102376	chr17	75534821	75536330	+	0	NA	intron (NM_004524, intron 1 of 24)	intron (NM_004524, intron 1 of 24)	9873	NM_001015002	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
67145	chr14	68703051	68703350	+	0	NA	Intergenic	Intergenic	-74413	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
227940	chr9	94377071	94377230	+	0	NA	intron (NM_032558, intron 1 of 11)	intron (NM_032558, intron 1 of 11)	2581	NM_032558	84641		NM_032558	ENSG00000148110	MFSD14B	HIATL1	major facilitator superfamily domain containing 14B	protein-coding
60973	chr13	46648171	46648350	+	0	NA	intron (NM_015116, intron 1 of 18)	MER1A|DNA|hAT-Charlie	95090	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
114451	chr19	12707151	12707650	+	0	NA	promoter-TSS (NR_002751)	promoter-TSS (NR_002751)	-882	NR_002751	26810		NR_002751	ENSG00000209702	SNORD41	RNU41|U41	small nucleolar RNA, C/D box 41	snoRNA
196003	chr6	42005401	42006030	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSq2|SINE|Alu	43179	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
65731	chr14	53126621	53127330	+	0	NA	intron (NM_030637, intron 1 of 11)	intron (NM_030637, intron 1 of 11)	26348	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
61739	chr13	74137771	74138180	+	0	NA	Intergenic	AluSp|SINE|Alu	-4046	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
185358	chr5	127290101	127290500	+	0	NA	promoter-TSS (NM_001308121)	promoter-TSS (NM_001308121)	-464	NM_001308121	84466		NM_032446	ENSG00000145794	MEGF10	CMYP10A|CMYP10B|EMARDD|SR-F3	multiple EGF like domains 10	protein-coding
124404	chr19	58410121	58410380	+	0	NA	intron (NM_173548, intron 2 of 3)	intron (NM_173548, intron 2 of 3)	1576	NR_134461	201514		NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
79365	chr16	632871	634080	+	0	NA	TTS (NM_001288710)	TTS (NM_001288710)	2490	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
29098	chr10	68231201	68231640	+	0	NA	exon (NM_145178, exon 1 of 1)	exon (NM_145178, exon 1 of 1)	693	NM_145178	220202		NM_145178	ENSG00000179774	ATOH7	Math5|NCRNA|PHPVAR|RNANC|bHLHa13	atonal bHLH transcription factor 7	protein-coding
151228	chr21	45262871	45263430	+	0	NA	TTS (NM_015227)	TTS (NM_015227)	24745	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
206832	chr7	37331501	37331900	+	0	NA	intron (NM_014800, intron 2 of 21)	intron (NM_014800, intron 2 of 21)	21968	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
192242	chr6	20126721	20127150	+	0	NA	intron (NR_073465, intron 3 of 9)	intron (NR_073465, intron 3 of 9)	85534	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
159377	chr3	13352601	13353000	+	0	NA	intron (NM_024923, intron 18 of 39)	intron (NM_024923, intron 18 of 39)	67522	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
11233	chr1	88888451	88889150	+	0	NA	intron (NM_001514, intron 1 of 6)	L1ME3A|LINE|L1	2767	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
5203	chr1	24964671	24965830	+	0	NA	promoter-TSS (NM_001320672)	promoter-TSS (NM_001320672)	-240	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
3680	chr1	16500621	16500880	+	0	NA	Intergenic	Intergenic	-8049	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
175334	chr4	68352001	68352400	+	0	NA	Intergenic	MER4B|LTR|ERV1	-2110	NM_001031732	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
183010	chr5	72822671	72823030	+	0	NA	intron (NM_001364292, intron 1 of 24)	AluSx3|SINE|Alu	6189	NM_001364292	3842		NM_002270	ENSG00000083312	TNPO1	IPO2|KPNB2|MIP|MIP1|TRN	transportin 1	protein-coding
176866	chr4	102618271	102618700	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-115999	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
28387	chr10	47384151	47384790	+	0	NA	promoter-TSS (NM_001346933)	promoter-TSS (NM_001346933)	-177	NM_001346933	118738		NM_153034	ENSG00000265763	ZNF488	-	zinc finger protein 488	protein-coding
35484	chr11	1511171	1511650	+	0	NA	Intergenic	Intergenic	-24631	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
7033	chr1	31928521	31929230	+	0	NA	intron (NM_080391, intron 1 of 5)	intron (NM_080391, intron 1 of 5)	8943	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
189720	chr5	176533621	176534300	+	0	NA	intron (NM_014901, intron 1 of 10)	L2c|LINE|L2	3442	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
81844	chr16	11586421	11588030	+	0	NA	promoter-TSS (NM_001136473)	promoter-TSS (NM_001136473)	241	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
79390	chr16	659251	659350	+	0	NA	exon (NM_145294, exon 26 of 41)	exon (NM_145294, exon 26 of 41)	-8783	NM_001352287	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
229839	chr9	125823911	125825500	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	76522	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
87997	chr16	80743221	80743500	+	0	NA	intron (NM_152342, intron 1 of 6)	intron (NM_152342, intron 1 of 6)	61238	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
160464	chr3	30356001	30356200	+	0	NA	Intergenic	Intergenic	-162768	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
186523	chr5	138357521	138358730	+	0	NA	intron (NM_016604, intron 1 of 23)	AluSq2|SINE|Alu	5440	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
175001	chr4	51842121	51844000	+	0	NA	promoter-TSS (NM_001040402)	promoter-TSS (NM_001040402)	60	NM_001287757	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
8741	chr1	42695751	42696330	+	0	NA	intron (NR_132737, intron 2 of 6)	intron (NR_132737, intron 2 of 6)	12904	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
61568	chr13	71285821	71286400	+	0	NA	Intergenic	L1M1|LINE|L1	270969	NR_047699	100885781		NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA
126706	chr2	30166071	30166530	+	0	NA	Intergenic	Intergenic	19293	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
198416	chr6	106079451	106079750	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6736	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
152253	chr22	20236521	20236980	+	0	NA	Intergenic	Intergenic	12461	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
42093	chr11	67512201	67512400	+	0	NA	Intergenic	Intergenic	-4138	NM_001271849	10263		NM_005851	ENSG00000167797	CDK2AP2	DOC-1R|DOC1R|p14	cyclin dependent kinase 2 associated protein 2	protein-coding
64073	chr14	22566251	22566350	+	0	NA	intron (NM_001344, intron 2 of 2)	intron (NM_001344, intron 2 of 2)	-9238	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
225386	chr9	35037321	35037600	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-3635	NM_001040411	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
169261	chr3	157174371	157176400	+	0	NA	Intergenic	Intergenic	-15238	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
74277	chr15	57561001	57561380	+	0	NA	Intergenic	Intergenic	-30714	NM_001018091	145781		NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GCOM1, MYZAP-POLR2M combined locus	protein-coding
95147	chr17	35074281	35074930	+	0	NA	intron (NR_037713, intron 1 of 6)	MIR|SINE|MIR	-10898	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
214275	chr7	149005571	149006730	+	0	NA	intron (NM_001371244, intron 7 of 9)	intron (NM_001371244, intron 7 of 9)	18623	NR_130107	102723099		NR_130107	ENSG00000281189	GHET1	lncRNA-GHET1	gastric carcinoma proliferation enhancing transcript 1	ncRNA
96314	chr17	39980081	39981780	+	0	NA	5' UTR (NM_002809, exon 1 of 12)	5' UTR (NM_002809, exon 1 of 12)	123	NM_002809	5709		NM_002809	ENSG00000108344	PSMD3	P58|RPN3|S3|TSTA2	proteasome 26S subunit, non-ATPase 3	protein-coding
47265	chr12	1532051	1532450	+	0	NA	promoter-TSS (NR_160736)	promoter-TSS (NR_160736)	-58	NR_160736	107984507		NR_160736		LOC107984507	-	uncharacterized LOC107984507	ncRNA
175280	chr4	67538671	67539450	+	0	NA	intron (NR_155754, intron 4 of 18)	L1M5|LINE|L1	6443	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
64286	chr14	23478021	23478630	+	0	NA	TTS (NM_001042635)	TTS (NM_001042635)	8622	NM_001042635	25983		NM_015514	ENSG00000129460	NGDN	C14orf120|CANu1|LCP5|NGD|lpd-2	neuroguidin	protein-coding
154557	chr22	36234751	36235050	+	0	NA	intron (NM_145637, intron 2 of 5)	MIR|SINE|MIR	4627	NM_030882	23780		NM_030882	ENSG00000128335	APOL2	APOL-II|APOL3	apolipoprotein L2	protein-coding
191486	chr6	11211951	11212050	+	0	NA	intron (NM_182966, intron 2 of 2)	intron (NM_182966, intron 2 of 2)	20668	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
127190	chr2	38528951	38529250	+	0	NA	Intergenic	AluJr|SINE|Alu	-13360	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
197297	chr6	71420671	71420980	+	0	NA	promoter-TSS (NR_026807)	promoter-TSS (NR_026807)	-80	NR_121613	79940		NR_026807	ENSG00000233237	LINC00472	C6orf155|P53RRA	long intergenic non-protein coding RNA 472	ncRNA
227696	chr9	93019271	93019680	+	0	NA	intron (NM_001369951, intron 11 of 17)	L1ME4b|LINE|L1	-4531	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
144628	chr20	35923801	35924000	+	0	NA	intron (NM_016436, intron 13 of 17)	AluJr|SINE|Alu	30602	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
99243	chr17	49696091	49697200	+	0	NA	Intergenic	Intergenic	11319	NM_001278784	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
47290	chr12	1657101	1657580	+	0	NA	Intergenic	AluJr|SINE|Alu	3040	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
156624	chr22	41592471	41592930	+	0	NA	Intergenic	AluY|SINE|Alu	-2860	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
51085	chr12	49962521	49963080	+	0	NA	promoter-TSS (NR_110591)	promoter-TSS (NR_110591)	-17	NR_110591	101927318		NR_110589	ENSG00000257588	AQP5-AS1	MIAC	AQP5 and AQP2 antisense RNA 2	ncRNA
184757	chr5	109874021	109874280	+	0	NA	Intergenic	Intergenic	-9032	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
37529	chr11	18631251	18631550	+	0	NA	intron (NM_194285, intron 1 of 5)	AluSz|SINE|Alu	2942	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
27775	chr10	35378501	35378700	+	0	NA	intron (NM_001282852, intron 1 of 8)	intron (NM_001282852, intron 1 of 8)	41726	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
105441	chr17	82920321	82920400	+	0	NA	intron (NM_005993, intron 23 of 38)	intron (NM_005993, intron 23 of 38)	-80338	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
165186	chr3	72444371	72445250	+	0	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	1813	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
153067	chr22	23301751	23302050	+	0	NA	intron (NM_004327, intron 16 of 22)	intron (NM_004327, intron 16 of 22)	-24716	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
197122	chr6	57348501	57348900	+	0	NA	intron (NM_000947, intron 5 of 13)	MER20B|DNA|hAT-Charlie	31070	NM_000947	5558		NM_000947	ENSG00000146143	PRIM2	PRIM2A|p58	DNA primase subunit 2	protein-coding
80912	chr16	3749601	3750200	+	0	NA	intron (NM_004380, intron 20 of 30)	AluJb|SINE|Alu	-32376	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
32718	chr10	104233601	104234100	+	0	NA	Intergenic	Intergenic	-1486	NM_025145	80217		NM_025145	ENSG00000197748	CFAP43	C10orf79|HYDNP1|SPGF19|WDR96|bA373N18.2	cilia and flagella associated protein 43	protein-coding
36883	chr11	10725401	10725830	+	0	NA	Intergenic	Intergenic	-25631	NM_001346279	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
183237	chr5	76383021	76383750	+	0	NA	Intergenic	MLT2D|LTR|ERVL	-19900	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
27614	chr10	32923321	32923580	+	0	NA	intron (NM_133376, intron 7 of 15)	intron (NM_133376, intron 7 of 15)	12108	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
33507	chr10	119163621	119163930	+	0	NA	intron (NR_110305, intron 2 of 13)	intron (NR_110305, intron 2 of 13)	1917	NR_110305	119559		NM_178867	ENSG00000183605	SFXN4	BCRM1|COXPD18|SLC56A4	sideroflexin 4	protein-coding
100521	chr17	62454851	62454950	+	0	NA	Intergenic	AluJr|SINE|Alu	-22911	NM_001375271	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
210020	chr7	93442671	93443030	+	0	NA	intron (NM_001164737, intron 11 of 15)	intron (NM_001164737, intron 11 of 15)	40005	NR_030388	724023		NR_030388	ENSG00000208014	MIR653	MIRN653|hsa-mir-653|mir-653	microRNA 653	ncRNA
163826	chr3	52450571	52451350	+	0	NA	TTS (NM_003280)	TTS (NM_003280)	3081	NM_003280	7134		NM_003280	ENSG00000114854	TNNC1	CMD1Z|CMH13|TN-C|TNC|TNNC	troponin C1, slow skeletal and cardiac type	protein-coding
232841	chr9	136765551	136765850	+	0	NA	Intergenic	AluSp|SINE|Alu	-1182	NM_203347	389812		NM_203347	ENSG00000177984	LCN15	PRO6093|UNQ2541	lipocalin 15	protein-coding
92961	chr17	17066621	17066880	+	0	NA	intron (NM_015134, intron 1 of 22)	AluJr|SINE|Alu	24293	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
227668	chr9	92981221	92981500	+	0	NA	intron (NM_001369951, intron 3 of 17)	AluY|SINE|Alu	6891	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
145244	chr20	38935171	38935730	+	0	NA	intron (NM_030919, intron 1 of 3)	AluJb|SINE|Alu	9033	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
164973	chr3	71298971	71299530	+	0	NA	intron (NR_126463, intron 3 of 4)	intron (NR_126463, intron 3 of 4)	5521	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
147936	chr20	62928701	62930130	+	0	NA	intron (NM_022105, intron 1 of 5)	CpG	-2864	NM_080796	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
55112	chr12	98521971	98522130	+	0	NA	intron (NM_001307975, intron 1 of 7)	AluJr|SINE|Alu	-5824	NR_027157	100128191		NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
75782	chr15	68795201	68796350	+	0	NA	intron (NM_006305, intron 1 of 6)	L2c|LINE|L2	6150	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
13163	chr1	111754951	111756850	+	0	NA	promoter-TSS (NR_125963)	promoter-TSS (NR_125963)	-1	NM_007204	11218		NM_007204	ENSG00000064703	DDX20	DP103|GEMIN3	DEAD-box helicase 20	protein-coding
203791	chr7	1246571	1246730	+	0	NA	Intergenic	CpG	13778	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
88905	chr16	87803721	87803980	+	0	NA	Intergenic	Intergenic	-24702	NR_120309	102724467		NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA
84012	chr16	29462051	29462750	+	0	NA	intron (NM_001017390, intron 4 of 7).2	AluSg|SINE|Alu	2487	NM_001017390	445329		NM_001017389	ENSG00000213648	SULT1A4	HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|STM|TL-PST	sulfotransferase family 1A member 4	protein-coding
196309	chr6	43057071	43057430	+	0	NA	intron (NM_001300848, intron 2 of 5)	AluSx1|SINE|Alu	2184	NM_001300848	51069		NM_015950	ENSG00000112651	MRPL2	CGI-22|MRP-L14|RPML14|uL2m	mitochondrial ribosomal protein L2	protein-coding
125216	chr2	10315971	10316130	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	12350	NM_134421	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
4844	chr1	23687651	23688180	+	0	NA	Intergenic	AluJr|SINE|Alu	-3864	NM_001199802	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
156723	chr22	41795501	41795900	+	0	NA	intron (NM_152513, intron 29 of 30)	intron (NM_152513, intron 29 of 30)	-4979	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
229765	chr9	125193351	125193950	+	0	NA	Intergenic	AluSz|SINE|Alu	-3711	NM_001123369	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
36721	chr11	9159021	9159400	+	0	NA	intron (NM_001243254, intron 12 of 22)	L1MB7|LINE|L1	64847	NR_027713	283102		NM_198473	ENSG00000213538	KRT8P41	-	keratin 8 pseudogene 41	pseudo
159520	chr3	14422251	14422750	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	19894	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
149521	chr21	32921621	32921930	+	0	NA	Intergenic	(TCTTC)n|Simple_repeat|Simple_repeat	-37113	NR_135522	102724502		NR_135522	ENSG00000228961	LINC01690	-	long intergenic non-protein coding RNA 1690	ncRNA
185671	chr5	131631821	131632480	+	0	NA	intron (NM_016340, intron 1 of 27)	L2a|LINE|L2	3079	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
17699	chr1	158180921	158181230	+	0	NA	5' UTR (NM_001319145, exon 1 of 5)	5' UTR (NM_001319145, exon 1 of 5)	180	NM_001371761	912		NM_001766	ENSG00000158473	CD1D	CD1A|R3|R3G1	CD1d molecule	protein-coding
124172	chr19	56117871	56118330	+	0	NA	intron (NM_001351682, intron 1 of 1)	intron (NM_001351682, intron 1 of 1)	3195	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
176898	chr4	102794071	102794580	+	0	NA	TTS (NM_181893)	TTS (NM_181893)	17288	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
20873	chr1	202131651	202132350	+	0	NA	3' UTR (NM_004767, exon 2 of 2)	3' UTR (NM_004767, exon 2 of 2)	9083	NM_004767	9283		NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2|ETBRLP2	G protein-coupled receptor 37 like 1	protein-coding
219853	chr8	83898251	83898350	+	0	NA	Intergenic	L1PA5|LINE|L1	-284487	NM_001354325	138046		NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein like	protein-coding
71999	chr15	25853071	25853500	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	-4460	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
75991	chr15	70558951	70560200	+	0	NA	Intergenic	Intergenic	27031	NR_135691	101929151		NR_135691	ENSG00000280639	LINC02204	-	long intergenic non-protein coding RNA 2204	ncRNA
203460	chr7	450701	451250	+	0	NA	Intergenic	Intergenic	-19174	NR_165236	112267991		NR_165236		LOC112267991	-	uncharacterized LOC112267991	ncRNA
43749	chr11	86140151	86140250	+	0	NA	Intergenic	AluJo|SINE|Alu	-70340	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
63658	chr14	21005901	21006230	+	0	NA	Intergenic	PABL_A-int|LTR|ERV1	6772	NM_001256588	29986		NM_014579	ENSG00000165794	SLC39A2	6A1|ETI-1|ZIP-2|ZIP2	solute carrier family 39 member 2	protein-coding
218776	chr8	58981001	58981430	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	137932	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
82730	chr16	21169321	21169580	+	0	NA	intron (NM_001301775, intron 3 of 5)	AluJr4|SINE|Alu	-10009	NM_017539	55567		NM_017539	ENSG00000158486	DNAH3	DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3	dynein axonemal heavy chain 3	protein-coding
76170	chr15	72964671	72964830	+	0	NA	Intergenic	Intergenic	-87713	NM_002499	4756		NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
49954	chr12	40148451	40149230	+	0	NA	Intergenic	Intergenic	-7399	NR_146526	105369734		NR_146526		LINC02471	-	long intergenic non-protein coding RNA 2471	ncRNA
176962	chr4	103152771	103152930	+	0	NA	intron (NM_001286734, intron 24 of 46)	L1ME1|LINE|L1	45493	NM_001286734	1062		NM_001813	ENSG00000138778	CENPE	CENP-E|KIF10|MCPH13|PPP1R61	centromere protein E	protein-coding
145371	chr20	41166951	41167250	+	0	NA	intron (NM_182811, intron 19 of 31)	intron (NM_182811, intron 19 of 31)	-1923	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
787	chr1	1537601	1538300	+	0	NA	intron (NM_001114748, intron 2 of 3)	CpG	2674	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
185727	chr5	132069801	132070000	+	0	NA	Intergenic	Intergenic	-3889	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
39640	chr11	61566551	61566650	+	0	NA	intron (NM_001370211, intron 1 of 7)	intron (NM_001370211, intron 1 of 7)	14272	NM_001252065	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
133452	chr2	119680921	119681380	+	0	NA	exon (NM_001105199, exon 2 of 2)	exon (NM_001105199, exon 2 of 2)	1949	NM_030577	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
216878	chr8	22643771	22644150	+	0	NA	intron (NR_156436, intron 2 of 9)	intron (NR_156436, intron 2 of 9)	-1751	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
21697	chr1	206730801	206731400	+	0	NA	intron (NM_032960, intron 6 of 9)	intron (NM_032960, intron 6 of 9)	39503	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
114576	chr19	12921151	12922130	+	0	NA	TTS (NM_004461)	TTS (NM_004461)	1320	NR_049880	100847016		NR_049880	ENSG00000266721	MIR5695	-	microRNA 5695	ncRNA
220891	chr8	104745271	104745430	+	0	NA	Intergenic	L1HS|LINE|L1	-156326	NM_013437	29967		NM_013437	ENSG00000147650	LRP12	ALS28|MIG13A|ST7	LDL receptor related protein 12	protein-coding
199634	chr6	121334301	121335380	+	0	NA	promoter-TSS (NR_104452)	promoter-TSS (NR_104452)	-111	NM_001367759	221322		NM_152730	ENSG00000146350	TBC1D32	BROMI|C6orf170|C6orf171	TBC1 domain family member 32	protein-coding
80842	chr16	3495351	3495650	+	0	NA	promoter-TSS (NM_001353385)	promoter-TSS (NM_001353385)	-11	NM_001353385	646174		NM_001080524	ENSG00000215131	C16orf90	-	chromosome 16 open reading frame 90	protein-coding
76710	chr15	75901071	75901580	+	0	NA	TTS (NM_001145335)	TTS (NM_001145335)	-2534	NM_012170	26263		NM_012170	ENSG00000167196	FBXO22	FBX22|FISTC1	F-box protein 22	protein-coding
56180	chr12	111428421	111429180	+	0	NA	intron (NM_005475, intron 2 of 7)	intron (NM_005475, intron 2 of 7)	-6062	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
10453	chr1	66284751	66285050	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-47208	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
182989	chr5	72171851	72172030	+	0	NA	intron (NM_005909, intron 2 of 6)	intron (NM_005909, intron 2 of 6)	2473	NR_039967	100616377		NR_039967	ENSG00000264099	MIR4803	-	microRNA 4803	ncRNA
155370	chr22	38294201	38294630	+	0	NA	exon (NM_001289912, exon 12 of 15)	exon (NM_001289912, exon 12 of 15)	-21405	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
178796	chr4	153493201	153493400	+	0	NA	intron (NM_015196, intron 3 of 34)	AluY|SINE|Alu	26940	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
222430	chr8	134714351	134714650	+	0	NA	Intergenic	Intergenic	-1469	NM_001289394	57623		NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
153106	chr22	23541801	23542080	+	0	NA	intron (NR_109832, intron 2 of 3)	HERVK-int|LTR|ERVK	3838	NR_109832	101978785		NR_109832		PCAT14	-	prostate cancer associated transcript 14	ncRNA
155845	chr22	39449751	39450050	+	0	NA	Intergenic	Intergenic	-7112	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
206936	chr7	38235651	38236050	+	0	NA	Intergenic	Intergenic	37797	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
99794	chr17	51255201	51255600	+	0	NA	intron (NM_017643, intron 2 of 16)	intron (NM_017643, intron 2 of 16)	4649	NM_017643	54799		NM_017643	ENSG00000011258	MBTD1	SA49P01	mbt domain containing 1	protein-coding
191722	chr6	13689751	13689850	+	0	NA	intron (NM_005493, intron 2 of 13)	L2c|LINE|L2	22035	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
129036	chr2	64992151	64992250	+	0	NA	intron (NM_003038, intron 1 of 7)	intron (NM_003038, intron 1 of 7)	2801	NM_003038	6509		NM_003038	ENSG00000115902	SLC1A4	ASCT1|SATT|SPATCCM	solute carrier family 1 member 4	protein-coding
179287	chr4	177307471	177307630	+	0	NA	Intergenic	Intergenic	-2324	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
32178	chr10	101572221	101572850	+	0	NA	Intergenic	Intergenic	15722	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
152748	chr22	21733051	21733350	+	0	NA	intron (NM_013313, intron 1 of 4)	AluSx|SINE|Alu	2594	NM_013313	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
71075	chr14	104854701	104855300	+	0	NA	Intergenic	Intergenic	-10268	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
27115	chr10	27742051	27742700	+	0	NA	intron (NM_173576, intron 2 of 6)	CpG-2760	-2240	NR_121652	101929202		NR_121652		MKX-AS1	-	MKX antisense RNA 1	ncRNA
119356	chr19	39996321	39997680	+	0	NA	promoter-TSS (NM_001297763)	promoter-TSS (NM_001297763)	-60	NM_178544	339327		NM_178544	ENSG00000187187	ZNF546	ZNF49	zinc finger protein 546	protein-coding
8900	chr1	43936051	43936780	+	0	NA	exon (NM_057091, exon 5 of 5)	exon (NM_057091, exon 5 of 5)	2614	NM_057091	9048		NM_003976	ENSG00000117407	ARTN	ART|ENOVIN|EVN|NBN	artemin	protein-coding
93474	chr17	18855621	18856630	+	0	NA	promoter-TSS (NM_001353104)	promoter-TSS (NM_001353104)	-174	NM_001243942	5636		NM_002767	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase associated protein 2	protein-coding
32871	chr10	110083651	110084500	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	67905	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
55772	chr12	108572401	108572800	+	0	NA	Intergenic	LTR43|LTR|ERV1	10004	NM_213595	23479		NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
78596	chr15	93052271	93052750	+	0	NA	intron (NM_001166283, intron 2 of 3)	intron (NM_001166283, intron 2 of 3)	20646	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
48897	chr12	12542971	12543130	+	0	NA	intron (NM_030640, intron 1 of 6)	MLT1A0|LTR|ERVL-MaLR	19813	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
196530	chr6	43838351	43838680	+	0	NA	Intergenic	Intergenic	13818	NR_149142	285857		NR_149142	ENSG00000283215	LINC02537	-	long intergenic non-protein coding RNA 2537	ncRNA
60600	chr13	42043001	42043700	+	0	NA	intron (NM_001204504, intron 1 of 29)	intron (NM_001204504, intron 1 of 29)	3314	NM_001204504	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
4078	chr1	19073271	19073430	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-116674	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
199733	chr6	125769701	125770700	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-10915	NM_001199619	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
163044	chr3	49871051	49871150	+	0	NA	Intergenic	Intergenic	-1194	NM_001320147	79012		NM_024046	ENSG00000164076	CAMKV	1G5|VACAMKL	CaM kinase like vesicle associated	protein-coding
130220	chr2	84718101	84718300	+	0	NA	intron (NM_001370, intron 58 of 76)	intron (NM_001370, intron 58 of 76)	162884	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
142446	chr20	3980021	3981750	+	0	NA	intron (NM_001134338, intron 1 of 6)	MER102b|DNA|hAT-Charlie	34673	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
58752	chr12	132618321	132618780	+	0	NA	promoter-TSS (NM_001282164)	promoter-TSS (NM_001282164)	-226	NM_174873	22953		NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	purinergic receptor P2X 2	protein-coding
134075	chr2	131516501	131517450	+	0	NA	intron (NR_026922, intron 13 of 17)	intron (NR_026922, intron 13 of 17)	-10700	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
163922	chr3	52682771	52683380	+	0	NA	intron (NM_181042, intron 1 of 29)	AluSc8|SINE|Alu	2524	NM_001350074	55193		NM_018313	ENSG00000163939	PBRM1	BAF180|PB1|RCC|SMARCH1	polybromo 1	protein-coding
135473	chr2	161384771	161385180	+	0	NA	intron (NM_005805, intron 7 of 11)	intron (NM_005805, intron 7 of 11)	-31322	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
81914	chr16	11738051	11738550	+	0	NA	intron (NR_136674, intron 1 of 8)	intron (NR_136674, intron 1 of 8)	4557	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
47805	chr12	6579471	6579630	+	0	NA	intron (NM_001273, intron 33 of 39)	AluSz|SINE|Alu	2059	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
47491	chr12	3973361	3973700	+	0	NA	Intergenic	Intergenic	-100082	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
151002	chr21	44416751	44417050	+	0	NA	intron (NR_109964, intron 2 of 2)	intron (NR_109964, intron 2 of 2)	-8629	NM_001320352	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
184328	chr5	96940151	96940450	+	0	NA	intron (NM_005575, intron 1 of 17)	intron (NM_005575, intron 1 of 17)	4220	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
115421	chr19	15302001	15302500	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-21799	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
154682	chr22	36370351	36370790	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	17397	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
174295	chr4	38455321	38456030	+	0	NA	intron (NR_110951, intron 2 of 7)	intron (NR_110951, intron 2 of 7)	-54092	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
121461	chr19	47050051	47050350	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-1576	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
147832	chr20	62742571	62742730	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	33814	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
54287	chr12	89252251	89252550	+	0	NA	Intergenic	Intergenic	100101	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
182548	chr5	65742521	65742880	+	0	NA	intron (NM_020726, intron 1 of 12)	intron (NM_020726, intron 1 of 12)	20495	NM_020726	57486		NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
121790	chr19	47849021	47849850	+	0	NA	Intergenic	AluSx1|SINE|Alu	27498	NM_000554	1406		NM_000554	ENSG00000105392	CRX	CORD2|CRD|LCA7|OTX3	cone-rod homeobox	protein-coding
225515	chr9	35709751	35710300	+	0	NA	TTS (NR_106911)	TTS (NR_106911)	716	NR_106911	102465513		NR_106911	ENSG00000284195	MIR6852	hsa-mir-6852	microRNA 6852	ncRNA
202873	chr6	159941501	159942100	+	0	NA	Intergenic	Intergenic	-27282	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
59700	chr13	29590901	29591100	+	0	NA	intron (NM_003045, intron 1 of 12)	AluJr|SINE|Alu	4688	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
110541	chr19	2092371	2092530	+	0	NA	intron (NM_130807, intron 1 of 4)	intron (NM_130807, intron 1 of 4)	3876	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
200040	chr6	129713801	129714330	+	0	NA	Intergenic	Intergenic	-3888	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
145908	chr20	45968921	45969180	+	0	NA	intron (NM_022095, intron 3 of 27)	MIR|SINE|MIR	3153	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
67644	chr14	73066971	73067430	+	0	NA	intron (NM_021239, intron 1 of 18)	AluSc8|SINE|Alu	8666	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
193340	chr6	30207921	30208180	+	0	NA	intron (NM_003449, intron 1 of 9).3	L2c|LINE|L2	5356	NM_003449	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
14580	chr1	145182721	145183080	+	0	NA	intron (NR_156690, intron 1 of 3)	MER66C|LTR|ERV1	-15293	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
148983	chr21	14029121	14029380	+	0	NA	Intergenic	Intergenic	-48806	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
12865	chr1	110120371	110120730	+	0	NA	Intergenic	(CACCAC)n|Simple_repeat|Simple_repeat	8107	NM_203412	164153		NM_203412	ENSG00000186150	UBL4B	-	ubiquitin like 4B	protein-coding
193875	chr6	31577801	31578000	+	0	NA	3' UTR (NM_000594, exon 4 of 4).6	3' UTR (NM_000594, exon 4 of 4).6	2335	NM_000594	7124		NM_000594	ENSG00000232810	TNF	DIF|TNF-alpha|TNFA|TNFSF2|TNLG1F	tumor necrosis factor	protein-coding
166501	chr3	114316871	114317030	+	0	NA	promoter-TSS (NR_030293)	promoter-TSS (NR_030293)	-381	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
3626	chr1	16377471	16378230	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	10608	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
150447	chr21	42463751	42464620	+	0	NA	Intergenic	Intergenic	32039	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
123123	chr19	51705451	51705550	+	0	NA	TTS (NM_001316972)	TTS (NM_001316972)	-12044	NR_108100	102238594		NR_108100	ENSG00000269959	SPACA6-AS1	LINC01129|SPACA6P-AS	SPACA6 antisense RNA 1	ncRNA
148212	chr20	63570921	63572000	+	0	NA	intron (NM_001037335, intron 2 of 19)	intron (NM_001037335, intron 2 of 19)	2779	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
89083	chr16	88471951	88473400	+	0	NA	intron (NM_153813, intron 1 of 9)	L1MB4|LINE|L1	3757	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
125883	chr2	24626251	24626350	+	0	NA	intron (NM_147233, intron 1 of 20)	intron (NM_147233, intron 1 of 20)	41823	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
145658	chr20	44959371	44961200	+	0	NA	exon (NM_006809, exon 1 of 7)	exon (NM_006809, exon 1 of 7)	112	NM_006809	10953		NM_006809	ENSG00000025772	TOMM34	HTOM34P|TOM34|URCC3	translocase of outer mitochondrial membrane 34	protein-coding
122414	chr19	49448301	49448500	+	0	NA	intron (NM_017916, intron 3 of 8)	L2b|LINE|L2	3414	NM_017916	55011		NM_017916	ENSG00000104872	PIH1D1	DNAAF14|MOT48|NOP17|Pih1	PIH1 domain containing 1	protein-coding
141913	chr20	1002851	1002950	+	0	NA	promoter-TSS (NM_001040007)	promoter-TSS (NM_001040007)	-589	NM_001040007	343637		NM_001029871	ENSG00000101282	RSPO4	C20orf182|CRISTIN4	R-spondin 4	protein-coding
173647	chr4	13539021	13539600	+	0	NA	Intergenic	Intergenic	5198	NM_001189	579		NM_001189	ENSG00000109705	NKX3-2	BAPX1|NKX3.2|NKX3B|SMMD	NK3 homeobox 2	protein-coding
45332	chr11	118216871	118218580	+	0	NA	intron (NM_001098526, intron 1 of 9)	MIR|SINE|MIR	-4779	NM_153206	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
86258	chr16	58464321	58464880	+	0	NA	promoter-TSS (NM_001378340)	promoter-TSS (NM_001378340)	-201	NM_022910	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
128808	chr2	62505721	62506380	+	0	NA	exon (NM_198276, exon 1 of 4)	exon (NM_198276, exon 1 of 4)	145	NM_198276	200728		NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
35767	chr11	2157471	2158080	+	0	NA	intron (NM_001042376, intron 2 of 4)	intron (NM_001042376, intron 2 of 4)	3434	NM_001185097	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
12890	chr1	110342871	110343030	+	0	NA	intron (NM_001201545, intron 1 of 1)	intron (NM_001201545, intron 1 of 1)	3573	NM_022768	64783		NM_014092	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding
178768	chr4	153378951	153379130	+	0	NA	intron (NR_045605, intron 6 of 9)	AluY|SINE|Alu	34352	NR_045605	84057		NM_032117	ENSG00000121211	MND1	GAJ	meiotic nuclear divisions 1	protein-coding
40703	chr11	64786271	64786750	+	0	NA	3' UTR (NM_001307990, exon 32 of 32)	3' UTR (NM_001307990, exon 32 of 32)	-7968	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
180985	chr5	35796851	35797830	+	0	NA	intron (NM_024867, intron 33 of 36)	(GT)n|Simple_repeat|Simple_repeat	-59551	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
155527	chr22	38697451	38697950	+	0	NA	intron (NM_014876, intron 2 of 4)	MIR|SINE|MIR	3243	NM_001360236	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
89276	chr16	88684621	88685700	+	0	NA	intron (NM_178310, intron 1 of 2)	intron (NM_178310, intron 1 of 2)	1347	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
141282	chr2	240143471	240144450	+	0	NA	Intergenic	Intergenic	-3302	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
199116	chr6	111688521	111688900	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	70421	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
92986	chr17	17153071	17153230	+	0	NA	intron (NM_015134, intron 12 of 22)	intron (NM_015134, intron 12 of 22)	53183	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
157989	chr22	49850351	49850980	+	0	NA	Intergenic	Intergenic	-3179	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
227818	chr9	93302471	93303000	+	0	NA	intron (NM_001282394, intron 26 of 29)	intron (NM_001282394, intron 26 of 29)	43568	NR_166069	445577		NM_001098808		FAM120A2P	C9orf129|bA165J3.3	family with sequence similarity 120A2, pseudogene	pseudo
188473	chr5	154758001	154758600	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	1146	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
126569	chr2	28681001	28682200	+	0	NA	Intergenic	Intergenic	54605	NR_145832	100505774		NR_145832	ENSG00000226833	LOC100505774	-	uncharacterized LOC100505774	ncRNA
22791	chr1	224434401	224435980	+	0	NA	promoter-TSS (NM_025160)	promoter-TSS (NM_025160)	341	NR_136293	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
71493	chr14	105998601	105998800	+	0	NA	Intergenic	Intergenic	-26431	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
37200	chr11	14321151	14321450	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	37185	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
189645	chr5	176192921	176193180	+	0	NA	intron (NR_036494, intron 1 of 25)	intron (NR_036494, intron 1 of 25)	6245	NR_036494	643201		NR_036494	ENSG00000248596	CEP192P1	-	CEP192 pseudogene 1	pseudo
216657	chr8	22130821	22131650	+	0	NA	promoter-TSS (NM_005144)	promoter-TSS (NM_005144)	-183	NM_018411	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
72831	chr15	40128801	40129980	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-20511	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
73351	chr15	42189971	42190530	+	0	NA	intron (NM_001301138, intron 5 of 25)	intron (NM_001301138, intron 5 of 25)	9416	NR_030357	693212		NR_030357	ENSG00000207712	MIR627	MIRN627|hsa-mir-627|mir-627	microRNA 627	ncRNA
97970	chr17	45250001	45251580	+	0	NA	intron (NR_110325, intron 2 of 4)	intron (NR_110325, intron 2 of 4)	2865	NR_110326	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
160197	chr3	23811951	23812130	+	0	NA	intron (NM_003341, intron 3 of 5)	intron (NM_003341, intron 3 of 5)	1586	NM_001202476	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
752	chr1	1497701	1498100	+	0	NA	TTS (NM_001317238)	TTS (NM_001317238)	-14262	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
209251	chr7	75885601	75886000	+	0	NA	intron (NM_001346186, intron 5 of 5)	MSTB|LTR|ERVL-MaLR	6766	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
18304	chr1	161163021	161163630	+	0	NA	intron (NM_001319847, intron 6 of 12)	intron (NM_001319847, intron 6 of 12)	-3101	NM_001365401	5498		NM_000309	ENSG00000143224	PPOX	PPO|V290M|VP|VPCO	protoporphyrinogen oxidase	protein-coding
126680	chr2	29921221	29921770	+	0	NA	promoter-TSS (NM_004304)	promoter-TSS (NM_004304)	91	NM_004304	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
53699	chr12	68537201	68537800	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-73399	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
84343	chr16	30199951	30200300	+	0	NA	intron (NM_177552, intron 1 of 7).2	MER5B|DNA|hAT-Charlie	870	NM_001017390	445329		NM_001017389	ENSG00000213648	SULT1A4	HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|STM|TL-PST	sulfotransferase family 1A member 4	protein-coding
31035	chr10	88887521	88887780	+	0	NA	intron (NM_020799, intron 1 of 10)	AluJb|SINE|Alu	7405	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
89756	chr16	89450851	89450950	+	0	NA	non-coding (NR_110932, exon 2 of 3)	non-coding (NR_110932, exon 2 of 3)	19982	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
226186	chr9	65062451	65062550	+	0	NA	Intergenic	L1PA2|LINE|L1	-80558	NR_160671	105379443		NR_160670		LOC105379443	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
109562	chr19	887171	887330	+	0	NA	intron (NM_005481, intron 4 of 15)	intron (NM_005481, intron 4 of 15)	5937	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
86778	chr16	67724671	67724830	+	0	NA	3' UTR (NM_020850, exon 14 of 14)	3' UTR (NM_020850, exon 14 of 14)	-5434	NM_001243650	81577		NM_030819	ENSG00000141098	GFOD2	-	Gfo/Idh/MocA-like oxidoreductase domain containing 2	protein-coding
56833	chr12	120232671	120233280	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	17188	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
32003	chr10	100985171	100985730	+	0	NA	TTS (NM_001308396)	TTS (NM_001308396)	2047	NM_032112	84545		NM_032112	ENSG00000055950	MRPL43	L43mt|MRP-L43|bMRP36a|mL43	mitochondrial ribosomal protein L43	protein-coding
108744	chr18	77108021	77109400	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	24073	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
133920	chr2	130353971	130354700	+	0	NA	Intergenic	Intergenic	-1721	NM_001142370	26469		NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase non-receptor type 18	protein-coding
106028	chr18	8607771	8608130	+	0	NA	Intergenic	AluJr|SINE|Alu	-1495	NM_001025300	201475		NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding
72138	chr15	29031601	29032480	+	0	NA	intron (NM_001353793, intron 2 of 12).2	intron (NM_001353793, intron 2 of 12).2	36513	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
216907	chr8	22694801	22696600	+	0	NA	Intergenic	CpG-27074	-2220	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
191895	chr6	15358701	15359100	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	110045	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
140475	chr2	233181571	233182030	+	0	NA	intron (NM_001017915, intron 18 of 26).2	MIR1_Amn|SINE|MIR	-69771	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
231743	chr9	132091371	132091630	+	0	NA	Intergenic	Intergenic	-11633	NM_004269	9442		NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|NEDSCAC|TRAP37	mediator complex subunit 27	protein-coding
237675	chrX	124347401	124347880	+	0	NA	intron (NM_002351, intron 1 of 3)	MIRb|SINE|MIR	1077	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
176134	chr4	83112221	83112480	+	0	NA	intron (NM_016619, intron 1 of 4)	intron (NM_016619, intron 1 of 4)	2379	NM_001130715	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
228238	chr9	97928951	97929250	+	0	NA	intron (NM_018437, intron 4 of 4)	intron (NM_018437, intron 4 of 4)	-6600	NM_001371661	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
161409	chr3	41241001	41241200	+	0	NA	TTS (NM_001904)	TTS (NM_001904)	41595	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
22982	chr1	226086571	226086730	+	0	NA	intron (NR_146920, intron 1 of 3)	AluSx|SINE|Alu	3075	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
229928	chr9	126632601	126632800	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	18772	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
114549	chr19	12879501	12879800	+	0	NA	intron (NM_001375, intron 3 of 5)	intron (NM_001375, intron 3 of 5)	1799	NM_001375	1777		NM_001375	ENSG00000105612	DNASE2	AIPCS|DNASE2A|DNL|DNL2	deoxyribonuclease 2, lysosomal	protein-coding
123770	chr19	55096771	55097500	+	0	NA	intron (NM_017607, intron 6 of 21)	CpG	16743	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
58272	chr12	128853421	128854080	+	0	NA	promoter-TSS (NR_148996)	promoter-TSS (NR_148996)	272	NM_001366888	144423		NM_144669	ENSG00000151948	GLT1D1	-	glycosyltransferase 1 domain containing 1	protein-coding
200454	chr6	135093471	135093650	+	0	NA	Intergenic	MIRb|SINE|MIR	-38738	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
231644	chr9	131622821	131623280	+	0	NA	intron (NM_001377935, intron 10 of 26)	AluSq|SINE|Alu	28353	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
112329	chr19	5911051	5911350	+	0	NA	TTS (NM_001017921)	TTS (NM_001017921)	-3054	NM_004058	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
4689	chr1	23019051	23020780	+	0	NA	exon (NM_001009999, exon 1 of 21)	exon (NM_001009999, exon 1 of 21)	447	NM_001009999	23028		NM_015013	ENSG00000004487	KDM1A	AOF2|BHC110|CPRF|KDM1|LSD1	lysine demethylase 1A	protein-coding
24523	chr1	244831721	244831980	+	0	NA	Intergenic	L1ME3G|LINE|L1	-3456	NM_001312871	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
186158	chr5	134179101	134179530	+	0	NA	Intergenic	Intergenic	-2282	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
140562	chr2	233298101	233298500	+	0	NA	Intergenic	AluSc8|SINE|Alu	-9516	NM_000541	6295		NM_000541	ENSG00000130561	SAG	RP47|RP96|S-AG	S-antigen visual arrestin	protein-coding
108643	chr18	76497201	76497580	+	0	NA	non-coding (NR_164145, exon 2 of 2)	non-coding (NR_164145, exon 2 of 2)	2051	NR_164145	400658		NM_207460	ENSG00000275763	ZNF516-DT	C18orf65	ZNF516 divergent transcript	ncRNA
86941	chr16	68107401	68108100	+	0	NA	intron (NM_173165, intron 1 of 9)	L1PA10|LINE|L1	22380	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
187748	chr5	143827251	143827550	+	0	NA	Intergenic	Intergenic	15239	NM_021182	57824		NM_021182	ENSG00000158497	HMHB1	HB-1|HB-1Y|HLA-HB1	histocompatibility minor HB-1	protein-coding
109475	chr19	808021	809180	+	0	NA	exon (NM_002819, exon 13 of 15)	exon (NM_002819, exon 13 of 15)	3660	NR_039900	100616459		NR_039900	ENSG00000284361	MIR4745	mir-4745	microRNA 4745	ncRNA
129584	chr2	70069971	70070200	+	0	NA	intron (NR_033872, intron 4 of 10)	AluSx|SINE|Alu	16930	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
57163	chr12	121350451	121350850	+	0	NA	intron (NM_001137559, intron 1 of 16)	AluY|SINE|Alu	1761	NM_001330489	51433		NM_016237	ENSG00000089053	ANAPC5	APC5	anaphase promoting complex subunit 5	protein-coding
64592	chr14	25400671	25400900	+	0	NA	Intergenic	Intergenic	-350488	NM_001351940	29091		NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding
55434	chr12	104522921	104523730	+	0	NA	intron (NM_018413, intron 1 of 2)	MIRb|SINE|MIR	66377	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
42572	chr11	71977571	71978130	+	0	NA	intron (NR_024148, intron 3 of 8)	intron (NR_024148, intron 3 of 8)	-21059	NM_001039660	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
180492	chr5	14207351	14207650	+	0	NA	intron (NR_134469, intron 1 of 56)	AluJr4|SINE|Alu	64158	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
96553	chr17	40402551	40403080	+	0	NA	intron (NM_001067, intron 20 of 34)	intron (NM_001067, intron 20 of 34)	15081	NM_001067	7153		NM_001067	ENSG00000131747	TOP2A	TOP2|TOP2alpha|TOPIIA|TP2A	DNA topoisomerase II alpha	protein-coding
39011	chr11	47739021	47739280	+	0	NA	intron (NM_015308, intron 8 of 16)	AluJb|SINE|Alu	-23781	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
41176	chr11	65623901	65624300	+	0	NA	intron (NM_032223, intron 13 of 34)	intron (NM_032223, intron 13 of 34)	7788	NM_032223	399909		NM_032223	ENSG00000197136	PCNX3	PCNXL3	pecanex 3	protein-coding
44141	chr11	96139871	96140680	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-201163	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
138727	chr2	213157201	213157600	+	0	NA	intron (NR_146974, intron 2 of 3)	intron (NR_146974, intron 2 of 3)	-4944	NM_001371277	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
176616	chr4	99404651	99404980	+	0	NA	Intergenic	LTR33|LTR|ERVL	30319	NM_001166504	131		NM_000673	ENSG00000196344	ADH7	ADH4	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	protein-coding
157548	chr22	45612421	45612950	+	0	NA	Intergenic	Intergenic	-7038	NR_131244	100506737		NR_131244	ENSG00000238120	LINC01589	TCONS_00029353	long intergenic non-protein coding RNA 1589	ncRNA
83785	chr16	28748651	28748950	+	0	NA	Intergenic	Intergenic	-3635	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
208729	chr7	73431051	73431500	+	0	NA	Intergenic	MIRb|SINE|MIR	-2503	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
163450	chr3	50603671	50604280	+	0	NA	Intergenic	L2a|LINE|L2	7799	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
132071	chr2	101269771	101270200	+	0	NA	3' UTR (NM_017546, exon 7 of 7)	3' UTR (NM_017546, exon 7 of 7)	3064	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
44848	chr11	114131321	114131900	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	68399	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
110325	chr19	1861471	1861630	+	0	NA	intron (NM_031918, intron 1 of 1)	intron (NM_031918, intron 1 of 1)	2029	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
62882	chr13	110676901	110677630	+	0	NA	intron (NM_001352252, intron 7 of 15)	intron (NM_001352252, intron 7 of 15)	28851	NR_147942	79587		NM_024537	ENSG00000134905	CARS2	COXPD27|cysRS	cysteinyl-tRNA synthetase 2, mitochondrial	protein-coding
167095	chr3	127576451	127577050	+	0	NA	intron (NR_073377, intron 5 of 9)	intron (NR_073377, intron 5 of 9)	-1419	NR_106883	102466199		NR_106883	ENSG00000275067	MIR6825	hsa-mir-6825	microRNA 6825	ncRNA
30244	chr10	75043521	75044380	+	0	NA	exon (NM_001003892, exon 3 of 4)	exon (NM_001003892, exon 3 of 4)	22217	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
93732	chr17	19723071	19723430	+	0	NA	Intergenic	Intergenic	-4271	NR_135624	146802		NM_152908	ENSG00000180638	SLC47A2	MATE2|MATE2-B|MATE2-K|MATE2K	solute carrier family 47 member 2	protein-coding
172291	chr4	1567501	1567700	+	0	NA	Intergenic	Intergenic	116391	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
55252	chr12	102052471	102052830	+	0	NA	intron (NM_001301107, intron 2 of 6)	L1MA8|LINE|L1	9341	NM_016053	51019		NM_016053	ENSG00000120860	WASHC3	CCDC53|CGI-116	WASH complex subunit 3	protein-coding
3208	chr1	13758001	13758480	+	0	NA	intron (NM_001135610, intron 6 of 7)	AluSx1|SINE|Alu	8825	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
195109	chr6	35621371	35621730	+	0	NA	intron (NM_001145775, intron 4 of 11)	AluSz|SINE|Alu	43239	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
112023	chr19	5073321	5073580	+	0	NA	intron (NM_001370093, intron 7 of 11)	intron (NM_001370093, intron 7 of 11)	104337	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
183285	chr5	76539651	76539950	+	0	NA	intron (NM_006633, intron 2 of 35)	LTR78B|LTR|ERV1	-7609	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
212344	chr7	127451201	127451600	+	0	NA	Intergenic	L1PA6|LINE|L1	-25483	NR_110024	100506682		NR_110024	ENSG00000226770	LINC03012	-	long intergenic non-protein coding RNA 3012	ncRNA
11488	chr1	90726651	90727180	+	0	NA	Intergenic	CpG	-9613	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
160222	chr3	23944651	23946900	+	0	NA	promoter-TSS (NM_001145425)	promoter-TSS (NM_001145425)	-346	NM_001145425	9975		NM_005126	ENSG00000174738	NR1D2	BD73|EAR-1R|REVERBB|REVERBbeta|RVR	nuclear receptor subfamily 1 group D member 2	protein-coding
114988	chr19	14042721	14043700	+	0	NA	intron (NM_004843, intron 6 of 13)	MIRb|SINE|MIR	11448	NM_004843	9466		NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
224899	chr9	32521601	32522130	+	0	NA	intron (NM_014314, intron 1 of 17)	LOR1-int|LTR|ERV1	4331	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
58625	chr12	132498001	132498230	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	-7291	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
201627	chr6	149448301	149448500	+	0	NA	3' UTR (NM_207360, exon 6 of 6)	3' UTR (NM_207360, exon 6 of 6)	36614	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
131629	chr2	96977751	96978480	+	0	NA	intron (NM_001122646, intron 1 of 16)	intron (NM_001122646, intron 1 of 16)	8465	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
40226	chr11	63553411	63554830	+	0	NA	intron (NM_017878, intron 3 of 3)	intron (NM_017878, intron 3 of 3)	9259	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
32669	chr10	103900471	103900630	+	0	NA	intron (NM_024928, intron 4 of 9)	intron (NM_024928, intron 4 of 9)	17634	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
235557	chrX	47251951	47252050	+	0	NA	Intergenic	Intergenic	18991	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
105559	chr17	83229001	83229300	+	0	NA	non-coding (NR_029406, exon 3 of 4)	non-coding (NR_029406, exon 3 of 4)	2253	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
64261	chr14	23237721	23238180	+	0	NA	promoter-TSS (NM_001282322)	promoter-TSS (NM_001282322)	14	NM_001282322	100507650		NM_001282322	ENSG00000215277	RNF212B	C14orf164	ring finger protein 212B	protein-coding
68430	chr14	81269251	81269750	+	0	NA	intron (NM_001366850, intron 7 of 7)	intron (NM_001366850, intron 7 of 7)	-48110	NM_201595	2957		NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding
145877	chr20	45943521	45943780	+	0	NA	intron (NM_022104, intron 9 of 16)	intron (NM_022104, intron 9 of 16)	8967	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
69204	chr14	92679301	92679780	+	0	NA	intron (NM_024832, intron 8 of 9)	intron (NM_024832, intron 8 of 9)	69087	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
38267	chr11	39366701	39367100	+	0	NA	Intergenic	Intergenic	718042	NR_120553	101928536		NR_120553	ENSG00000254562	LINC01493	-	long intergenic non-protein coding RNA 1493	ncRNA
73896	chr15	50677151	50677830	+	0	NA	intron (NR_149152, intron 1 of 38)	AluSg|SINE|Alu	9307	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
43597	chr11	83163621	83163880	+	0	NA	exon (NM_001346415, exon 3 of 16)	exon (NM_001346415, exon 3 of 16)	6619	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
207171	chr7	43604301	43604830	+	0	NA	intron (NM_004760, intron 2 of 6)	L1MEc|LINE|L1	21457	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
111058	chr19	3120351	3120650	+	0	NA	intron (NM_002067, intron 6 of 6)	intron (NM_002067, intron 6 of 6)	-15533	NM_002068	2769		NM_002068	ENSG00000060558	GNA15	GNA16|HG1L	G protein subunit alpha 15	protein-coding
128977	chr2	64669471	64669630	+	0	NA	Intergenic	Intergenic	-15637	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
236248	chrX	65744851	65744950	+	0	NA	Intergenic	L1MD1|LINE|L1	77246	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
214524	chr7	150506901	150507100	+	0	NA	Intergenic	AluJr|SINE|Alu	-7872	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
121338	chr19	46783601	46783800	+	0	NA	intron (NM_005628, intron 3 of 7)	AluJb|SINE|Alu	1114	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
166386	chr3	113495051	113495430	+	0	NA	intron (NM_144718, intron 4 of 17)	intron (NM_144718, intron 4 of 17)	19604	NM_001331079	152185		NM_144718	ENSG00000163611	SPICE1	CCDC52|SPICE	spindle and centriole associated protein 1	protein-coding
23736	chr1	232564051	232564150	+	0	NA	intron (NM_001377488, intron 2 of 21)	intron (NM_001377488, intron 2 of 21)	66033	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
27534	chr10	32320301	32321050	+	0	NA	intron (NR_168508, intron 1 of 12)	AluSz|SINE|Alu	26483	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
220397	chr8	100251601	100252000	+	0	NA	Intergenic	L1ME3G|LINE|L1	50393	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
142479	chr20	4592171	4592950	+	0	NA	Intergenic	CpG	-93896	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
174413	chr4	39445321	39445780	+	0	NA	intron (NM_175737, intron 3 of 4)	AluSp|SINE|Alu	13372	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
60479	chr13	41195571	41195930	+	0	NA	intron (NR_120423, intron 3 of 3)	MER51B|LTR|ERV1	-1181	NM_032138	84078		NM_032138	ENSG00000120696	KBTBD7	-	kelch repeat and BTB domain containing 7	protein-coding
175015	chr4	52545401	52545750	+	0	NA	Intergenic	Intergenic	110964	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
47780	chr12	6560801	6561200	+	0	NA	exon (NM_001033714, exon 12 of 16)	exon (NM_001033714, exon 12 of 16)	-4958	NM_001330324	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
182710	chr5	68239301	68240580	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	24184	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
6760	chr1	30739701	30739900	+	0	NA	promoter-TSS (NR_039616)	promoter-TSS (NR_039616)	-568	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
161224	chr3	39185351	39186130	+	0	NA	exon (NM_194293, exon 2 of 2)	exon (NM_194293, exon 2 of 2)	6855	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
31258	chr10	92048001	92048400	+	0	NA	3' UTR (NM_001178137, exon 10 of 10)	3' UTR (NM_001178137, exon 10 of 10)	124430	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
107695	chr18	49488871	49489330	+	0	NA	TTS (NR_003701)	TTS (NR_003701)	224	NR_003701	100124516		NR_003701		SNORD58C	U58	small nucleolar RNA, C/D box 58C	snoRNA
178747	chr4	153142951	153143280	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-9048	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
168349	chr3	141883651	141883980	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	7172	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
136408	chr2	176152801	176153000	+	0	NA	exon (NM_014621, exon 2 of 2)	exon (NM_014621, exon 2 of 2)	1350	NM_014621	3233		NM_014621	ENSG00000170166	HOXD4	HHO.C13|HOX-5.1|HOX4|HOX4B|Hox-4.2	homeobox D4	protein-coding
42776	chr11	72753801	72754200	+	0	NA	TTS (NM_006645)	TTS (NM_006645)	-1611	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
173668	chr4	14875021	14875480	+	0	NA	intron (NR_126435, intron 1 of 6)	MIRc|SINE|MIR	12919	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
141105	chr2	238462751	238463080	+	0	NA	Intergenic	L1MB7|LINE|L1	35988	NM_001330196	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
64796	chr14	34867071	34867630	+	0	NA	intron (NM_013448, intron 2 of 26)	MER33|DNA|hAT-Charlie	-6841	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
52907	chr12	57226551	57227030	+	0	NA	TTS (NM_007224)	TTS (NM_007224)	-2921	NM_001166356	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
140798	chr2	236068651	236068750	+	0	NA	intron (NM_001037131, intron 16 of 17)	AluY|SINE|Alu	99686	NM_001301687	2637		NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
150468	chr21	42537271	42537750	+	0	NA	intron (NM_018964, intron 6 of 20)	MER20|DNA|hAT-Charlie	23658	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
12375	chr1	101256671	101257030	+	0	NA	Intergenic	AluSc8|SINE|Alu	19831	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
93536	chr17	19045551	19045850	+	0	NA	intron (NM_001330148, intron 1 of 3)	intron (NM_001330148, intron 1 of 3)	1257	NM_006613	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
97734	chr17	44379771	44380100	+	0	NA	intron (NM_000419, intron 17 of 29)	intron (NM_000419, intron 17 of 29)	9714	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
59885	chr13	30679571	30680130	+	0	NA	Intergenic	Intergenic	-33628	NM_001204406	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
25027	chr10	3670901	3671100	+	0	NA	intron (NR_131187, intron 1 of 1)	intron (NR_131187, intron 1 of 1)	114209	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
239495	chrY	56754971	56755500	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-199020	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
12423	chr1	101451771	101452330	+	0	NA	Intergenic	LTR8|LTR|ERV1	128213	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
8126	chr1	39242371	39242780	+	0	NA	intron (NM_012090, intron 2 of 92)	AluJr|SINE|Alu	158408	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
105385	chr17	82714401	82715030	+	0	NA	intron (NR_136400, intron 1 of 1)	AluY|SINE|Alu	1538	NR_136400	101929552		NR_136400	ENSG00000263063	LOC101929552	-	uncharacterized LOC101929552	ncRNA
181494	chr5	42991401	42993100	+	0	NA	non-coding (NR_104643, exon 1 of 2)	non-coding (NR_104643, exon 1 of 2)	1083	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
216422	chr8	19385771	19386930	+	0	NA	intron (NM_001174160, intron 7 of 8)	intron (NM_001174160, intron 7 of 8)	72374	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
206705	chr7	36514621	36515080	+	0	NA	intron (NM_001177506, intron 20 of 21)	MIR3|SINE|MIR	85270	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
189308	chr5	172138871	172139430	+	0	NA	intron (NM_005990, intron 2 of 18)	L1MB1|LINE|L1	49074	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
2915	chr1	11694501	11694880	+	0	NA	intron (NM_198545, intron 1 of 6)	intron (NM_198545, intron 1 of 6)	2980	NM_198545	374946		NM_198545	ENSG00000162490	DRAXIN	AGPA3119|C1orf187|UNQ3119|neucrin	dorsal inhibitory axon guidance protein	protein-coding
87567	chr16	72093201	72094550	+	0	NA	promoter-TSS (NM_001142317)	promoter-TSS (NM_001142317)	-6	NM_001142317	54957		NM_017853	ENSG00000140830	TXNL4B	DLP|Dim2	thioredoxin like 4B	protein-coding
146973	chr20	52971121	52971380	+	0	NA	Intergenic	Intergenic	-1108	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
61998	chr13	80462101	80462300	+	0	NA	Intergenic	L2|LINE|L2	-121074	NM_005842	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
26753	chr10	22706401	22706800	+	0	NA	intron (NM_005028, intron 1 of 9)	L2a|LINE|L2	7508	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
171649	chr3	197651251	197651950	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	22976	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
41415	chr11	66048851	66049830	+	0	NA	promoter-TSS (NM_033036)	promoter-TSS (NM_033036)	-179	NM_033036	89792		NM_033036	ENSG00000175229	GAL3ST3	GAL3ST-3|GAL3ST2	galactose-3-O-sulfotransferase 3	protein-coding
182567	chr5	65935651	65936350	+	0	NA	intron (NM_001253697, intron 1 of 25)	AluJo|SINE|Alu	9425	NM_001253697	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
73659	chr15	44716851	44717630	+	0	NA	promoter-TSS (NR_162102)	promoter-TSS (NR_162102)	-604	NR_162102	113218500		NR_162102		MIR10393	-	microRNA 10393	ncRNA
36914	chr11	10798371	10798950	+	0	NA	intron (NM_001172705, intron 21 of 21)	AluJb|SINE|Alu	2948	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
645	chr1	1346821	1347300	+	0	NA	intron (NM_004421, intron 1 of 14)	intron (NM_004421, intron 1 of 14)	2358	NM_004421	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
23532	chr1	229154001	229154200	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	20701	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
117338	chr19	19528651	19528750	+	0	NA	promoter-TSS (NM_001190328)	promoter-TSS (NM_001190328)	-211	NM_001190328	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
109798	chr19	1153801	1154500	+	0	NA	intron (NM_014963, intron 2 of 31)	CpG	20118	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
220073	chr8	93969151	93969700	+	0	NA	Intergenic	L1PA6|LINE|L1	52478	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
74307	chr15	58269871	58270250	+	0	NA	Intergenic	LTR41B|LTR|ERVL	131679	NM_001320635	366		NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
196362	chr6	43230871	43231580	+	0	NA	Intergenic	LTR62|LTR|ERVL	-1744	NM_006443	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
160179	chr3	23474771	23474930	+	0	NA	intron (NM_001370225, intron 3 of 5)	L2a|LINE|L2	271523	NM_001370228	7325		NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
128124	chr2	48322151	48323050	+	0	NA	intron (NM_001375452, intron 1 of 5)	HAL1M8|LINE|L1	7918	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
53391	chr12	64693971	64694330	+	0	NA	intron (NR_040718, intron 3 of 3)	L2c|LINE|L2	65256	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
184263	chr5	96714451	96715380	+	0	NA	intron (NM_173060, intron 1 of 28)	intron (NM_173060, intron 1 of 28)	12255	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
222375	chr8	133645521	133646120	+	0	NA	Intergenic	L2c|LINE|L2	38246	NR_134462	105375773		NR_134462	ENSG00000289906	LINC03024	-	long intergenic non-protein coding RNA 3024	ncRNA
51453	chr12	52048421	52048680	+	0	NA	intron (NM_001202233, intron 2 of 7)	AluY|SINE|Alu	-2852	NM_002135	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
127058	chr2	37324201	37325680	+	0	NA	promoter-TSS (NM_005813)	promoter-TSS (NM_005813)	-107	NM_005813	23683		NM_005813	ENSG00000115825	PRKD3	EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU	protein kinase D3	protein-coding
155435	chr22	38459651	38460380	+	0	NA	Intergenic	Intergenic	-4816	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
222840	chr8	142611351	142612050	+	0	NA	3' UTR (NM_015193, exon 3 of 3)	3' UTR (NM_015193, exon 3 of 3)	2779	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
179051	chr4	165301721	165302150	+	0	NA	intron (NM_001161522, intron 7 of 13)	intron (NM_001161522, intron 7 of 13)	-21912	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
106137	chr18	9473771	9473930	+	0	NA	Intergenic	Intergenic	-1663	NM_006788	10928		NM_006788	ENSG00000017797	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
236139	chrX	63250271	63250480	+	0	NA	Intergenic	Intergenic	100957	NM_001012968	139886		NM_001012968	ENSG00000186767	SPIN4	LJBS|TDRD28	spindlin family member 4	protein-coding
154033	chr22	30459201	30459600	+	0	NA	3' UTR (NM_174975, exon 12 of 12)	3' UTR (NM_174975, exon 12 of 12)	12617	NM_174975	266629		NM_174975	ENSG00000100012	SEC14L3	TAP2	SEC14 like lipid binding 3	protein-coding
143984	chr20	32945751	32946200	+	0	NA	intron (NM_001143967, intron 23 of 26)	L1ME4a|LINE|L1	58458	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
92262	chr17	8015671	8016130	+	0	NA	intron (NM_000180, intron 16 of 19)	CpG-10657	13285	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
189971	chr5	177442121	177442700	+	0	NA	3' UTR (NM_002082, exon 16 of 16)	3' UTR (NM_002082, exon 16 of 16)	-3585	NM_001375593	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
67683	chr14	73143171	73143330	+	0	NA	intron (NM_007318, intron 1 of 11)	intron (NM_007318, intron 1 of 11)	6743	NM_007318	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
224877	chr9	31542171	31542730	+	0	NA	Intergenic	Intergenic	-160960	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
32361	chr10	102390571	102390730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3460	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
88500	chr16	85252871	85253580	+	0	NA	Intergenic	Intergenic	-29733	NR_038859	197196		NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
53856	chr12	69778851	69778950	+	0	NA	promoter-TSS (NM_001278402)	promoter-TSS (NM_001278402)	-52	NM_001278402	117177		NM_022456	ENSG00000127328	RAB3IP	RABIN3|RABIN8	RAB3A interacting protein	protein-coding
52336	chr12	54987071	54987230	+	0	NA	Intergenic	L1PA13|LINE|L1	-2388	NM_001136030	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
211818	chr7	108114251	108114350	+	0	NA	intron (NM_001318047, intron 3 of 22)	AluJb|SINE|Alu	16061	NM_007356	22798		NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
166628	chr3	119561971	119563030	+	0	NA	Intergenic	Intergenic	-2886	NM_005191	941		NM_005191	ENSG00000121594	CD80	B7|B7-1|B7.1|BB1|CD28LG|CD28LG1|LAB7	CD80 molecule	protein-coding
71569	chr14	106410101	106410580	+	0	NA	Intergenic	Intergenic	-72099	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
25199	chr10	5684021	5685000	+	0	NA	promoter-TSS (NM_001321783)	promoter-TSS (NM_001321783)	-328	NM_001321783	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
21191	chr1	203814551	203814850	+	0	NA	intron (NM_001376350, intron 2 of 17)	MLT1C-int|LTR|ERVL-MaLR	17177	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
75561	chr15	67034651	67034950	+	0	NA	intron (NR_135686, intron 2 of 5)	intron (NR_135686, intron 2 of 5)	29382	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
145899	chr20	45962701	45963380	+	0	NA	intron (NM_022095, intron 9 of 27)	AluSp|SINE|Alu	9163	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
201452	chr6	148464721	148465230	+	0	NA	intron (NM_001346506, intron 5 of 20)	intron (NM_001346506, intron 5 of 20)	-43524	NM_001346507	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
89044	chr16	88433621	88433880	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-19530	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
150837	chr21	44029571	44029730	+	0	NA	intron (NM_003274, intron 1 of 22)	MLT1B|LTR|ERVL-MaLR	17341	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
8313	chr1	40075651	40076250	+	0	NA	intron (NM_001363695, intron 7 of 7)	AluSx|SINE|Alu	21302	NM_000310	5538		NM_000310	ENSG00000131238	PPT1	CLN1|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding
70036	chr14	100105401	100107230	+	0	NA	intron (NM_016337, intron 3 of 13)	MER20B|DNA|hAT-Charlie	3199	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
154339	chr22	32206771	32207210	+	0	NA	intron (NR_149072, intron 1 of 3)	intron (NR_149072, intron 1 of 3)	1875	NR_149072	110806273		NR_149072	ENSG00000242082	SLC5A4-AS1	-	SLC5A4 antisense RNA 1	ncRNA
205215	chr7	7924771	7924930	+	0	NA	Intergenic	Intergenic	43902	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
137191	chr2	191144051	191144350	+	0	NA	intron (NM_003151, intron 3 of 23)	L2c|LINE|L2	6794	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
230642	chr9	128683851	128685240	+	0	NA	promoter-TSS (NM_001248000)	promoter-TSS (NM_001248000)	-527	NM_001248000	6418		NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|MRD58|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
71738	chr15	20612471	20612630	+	0	NA	Intergenic	LTR53|LTR|ERVL	50201	NR_027411	729786		NR_027411	ENSG00000181984	GOLGA8CP	GOLGA8C	golgin A8 family member C, pseudogene	pseudo
80211	chr16	2161071	2161600	+	0	NA	intron (NM_032271, intron 1 of 20)	intron (NM_032271, intron 1 of 20)	5553	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
162175	chr3	46992101	46992550	+	0	NA	intron (NM_001365116, intron 9 of 52)	intron (NM_001365116, intron 9 of 52)	4335	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
141564	chr2	241540201	241540400	+	0	NA	Intergenic	Intergenic	-18445	NM_032515	666		NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2 family apoptosis regulator BOK	protein-coding
109766	chr19	1125521	1125780	+	0	NA	intron (NM_001100122, intron 2 of 28).2	AluSp|SINE|Alu	6571	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
173940	chr4	25842071	25843000	+	0	NA	intron (NM_001297592, intron 2 of 23)	intron (NM_001297592, intron 2 of 23)	20453	NM_015187	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
152767	chr22	21772551	21773850	+	0	NA	intron (NM_138957, intron 6 of 7)	intron (NM_138957, intron 6 of 7)	-37406	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
142497	chr20	4724571	4725250	+	0	NA	exon (NM_012409, exon 2 of 2)	exon (NM_012409, exon 2 of 2)	3001	NM_012409	23627		NM_012409	ENSG00000171864	PRND	DOPPEL|DPL|PrPLP|dJ1068H6.4	prion like protein doppel	protein-coding
220379	chr8	100152171	100152530	+	0	NA	intron (NM_005034, intron 3 of 3)	Tigger3a|DNA|TcMar-Tigger	1714	NM_005034	5440		NM_005034	ENSG00000147669	POLR2K	ABC10-alpha|RPABC4|RPB10alpha|RPB12|RPB7.0|hRPB7.0|hsRPB10a	RNA polymerase II, I and III subunit K	protein-coding
215803	chr8	2238221	2238480	+	0	NA	Intergenic	Intergenic	161761	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
89552	chr16	89239101	89239800	+	0	NA	Intergenic	AluJb|SINE|Alu	21747	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
94723	chr17	30720771	30720930	+	0	NA	intron (NR_144394, intron 1 of 8)	(AGAA)n|Simple_repeat|Simple_repeat	11242	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
21898	chr1	207813471	207814000	+	0	NA	intron (NR_135299, intron 4 of 5)	intron (NR_135299, intron 4 of 5)	-4644	NR_026817	148696		NM_001039568		LOC148696	-	uncharacterized LOC148696	ncRNA
128999	chr2	64779021	64779400	+	0	NA	Intergenic	Intergenic	84421	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
218888	chr8	60649271	60649630	+	0	NA	Intergenic	AluSg|SINE|Alu	-29290	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
75292	chr15	65181371	65181730	+	0	NA	intron (NM_006660, intron 1 of 13)	AluSx1|SINE|Alu	3792	NR_133680	10845		NM_006660	ENSG00000166855	CLPX	EPP2	caseinolytic mitochondrial matrix peptidase chaperone subunit X	protein-coding
142836	chr20	17538671	17538900	+	0	NA	intron (NM_001278608, intron 3 of 9)	intron (NM_001278608, intron 3 of 9)	-7406	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
228149	chr9	96907471	96907630	+	0	NA	Intergenic	L1MC|LINE|L1	-1525	NR_028350	441454		NR_028350		PTMAP11	-	prothymosin alpha pseudogene 11	pseudo
22266	chr1	212681151	212681680	+	0	NA	Intergenic	Intergenic	18425	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
168043	chr3	136919371	136920330	+	0	NA	intron (NM_001291999, intron 1 of 3)	intron (NM_001291999, intron 1 of 3)	-10652	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
173696	chr4	15651001	15651200	+	0	NA	intron (NM_012161, intron 1 of 10)	intron (NM_012161, intron 1 of 10)	4257	NM_012161	26234		NM_012161	ENSG00000118564	FBXL5	FBL4|FBL5|FLR1	F-box and leucine rich repeat protein 5	protein-coding
142511	chr20	4817021	4817480	+	0	NA	intron (NM_014737, intron 2 of 11)	L1ME4a|LINE|L1	-2127	NM_170774	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
237941	chrX	132488421	132489500	+	0	NA	intron (NM_001170704, intron 1 of 8)	(CAGCGG)n|Simple_repeat|Simple_repeat	1075	NM_001170704	55796		NM_018388	ENSG00000076770	MBNL3	CHCR|MBLX|MBLX39|MBXL	muscleblind like splicing regulator 3	protein-coding
94188	chr17	28565771	28565930	+	0	NA	intron (NM_033198, intron 3 of 11)	AluSz|SINE|Alu	5674	NM_033198	94005		NM_033198	ENSG00000087111	PIGS	DEE95|GPIBD18|PIG-S	phosphatidylinositol glycan anchor biosynthesis class S	protein-coding
92591	chr17	9292201	9292430	+	0	NA	intron (NM_004853, intron 7 of 7)	intron (NM_004853, intron 7 of 7)	-113197	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
147442	chr20	58912821	58913280	+	0	NA	Intergenic	Intergenic	20887	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
40514	chr11	64280721	64281100	+	0	NA	intron (NM_032989, intron 2 of 3)	AluSx1|SINE|Alu	3755	NM_032989	572		NM_004322	ENSG00000002330	BAD	BBC2|BCL2L8	BCL2 associated agonist of cell death	protein-coding
15114	chr1	148635071	148635300	+	0	NA	intron (NM_001364008, intron 2 of 4)	L1MEb|LINE|L1	-39468	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
234487	chrX	18390801	18391330	+	0	NA	Intergenic	(AAC)n|Simple_repeat|Simple_repeat	-34540	NM_003159	6792		NM_003159	ENSG00000008086	CDKL5	CFAP247|DEE2|EIEE2|ISSX|STK9	cyclin dependent kinase like 5	protein-coding
74936	chr15	63749421	63750280	+	0	NA	intron (NM_003922, intron 8 of 77)	intron (NM_003922, intron 8 of 77)	84098	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
104489	chr17	81131601	81132000	+	0	NA	intron (NM_001080395, intron 2 of 13)	intron (NM_001080395, intron 2 of 13)	148	NM_004920	9625		NM_004920	ENSG00000181409	AATK	AATYK|AATYK1|LMR1|LMTK1|PPP1R77|p35BP	apoptosis associated tyrosine kinase	protein-coding
140766	chr2	234880571	234880730	+	0	NA	Intergenic	Intergenic	-71367	NM_014521	23677		NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding
202091	chr6	154370571	154370800	+	0	NA	Intergenic	Intergenic	-13919	NM_015553	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
110416	chr19	1960971	1961150	+	0	NA	intron (NM_001319, intron 1 of 11)	CpG	-6511	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
228092	chr9	96422101	96422300	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3830	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
150496	chr21	42783151	42783250	+	0	NA	Intergenic	L1M|LINE|L1	-3206	NR_135517	101928311		NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
16347	chr1	154277821	154278080	+	0	NA	Intergenic	AluSz|SINE|Alu	5321	NM_006118	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
152510	chr22	20954501	20954700	+	0	NA	TTS (NM_005207)	TTS (NM_005207)	-2492	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
112590	chr19	6678711	6679080	+	0	NA	intron (NM_000064, intron 38 of 40)	intron (NM_000064, intron 38 of 40)	-8307	NM_003807	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
48698	chr12	10601971	10602190	+	0	NA	Intergenic	Intergenic	-2245	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
49431	chr12	24719351	24719850	+	0	NA	Intergenic	Intergenic	-135432	NR_029451	144360		NM_144667	ENSG00000197503	LINC00477	C12orf67|FAM191B	long intergenic non-protein coding RNA 477	ncRNA
94881	chr17	31531171	31531530	+	0	NA	intron (NM_001346748, intron 12 of 12)	MER5B|DNA|hAT-Charlie	-3533	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
83800	chr16	28821201	28821600	+	0	NA	Intergenic	AluSz|SINE|Alu	-1648	NM_148414	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
68932	chr14	91381371	91381530	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	36370	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
147711	chr20	62363121	62364400	+	0	NA	intron (NM_005560, intron 1 of 79)	intron (NM_005560, intron 1 of 79)	3552	NM_005560	3911		NM_005560	ENSG00000130702	LAMA5	BBDS2|NPHS26	laminin subunit alpha 5	protein-coding
100481	chr17	61461821	61462800	+	0	NA	intron (NM_001321120, intron 3 of 8)	CpG	5822	NM_018488	9496		NM_018488	ENSG00000121075	TBX4	ICPPS|PAPPAS|SPS	T-box transcription factor 4	protein-coding
236267	chrX	66005421	66006080	+	0	NA	Intergenic	Intergenic	-13120	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
117461	chr19	19693571	19693730	+	0	NA	Intergenic	L1MB8|LINE|L1	24811	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
106269	chr18	12409171	12409330	+	0	NA	intron (NM_006553, intron 1 of 6)	AluSz6|SINE|Alu	1321	NM_001142405	10650		NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
160146	chr3	20080971	20081750	+	0	NA	intron (NM_003884, intron 2 of 17)	intron (NM_003884, intron 2 of 17)	40914	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
139089	chr2	218878721	218878980	+	0	NA	Intergenic	Intergenic	-2002	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
209087	chr7	74850751	74852500	+	0	NA	promoter-TSS (NM_001281447)	promoter-TSS (NM_001281447)	-49	NM_173537	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
16149	chr1	153681701	153682100	+	0	NA	intron (NM_000906, intron 4 of 21)	intron (NM_000906, intron 4 of 21)	3212	NM_000906	4881		NM_000906	ENSG00000169418	NPR1	ANPRA|ANPa|GUC2A|GUCY2A|NPRA	natriuretic peptide receptor 1	protein-coding
58556	chr12	132327551	132328250	+	0	NA	intron (NM_001122636, intron 1 of 10)	intron (NM_001122636, intron 1 of 10)	1689	NM_001122636	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
6924	chr1	31660951	31661450	+	0	NA	intron (NM_001856, intron 60 of 70)	intron (NM_001856, intron 60 of 70)	-16324	NM_012392	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
115233	chr19	14508121	14508930	+	0	NA	Intergenic	AluSx|SINE|Alu	9337	NM_001300914	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
53021	chr12	57551521	57552250	+	0	NA	intron (NM_001354705, intron 1 of 25)	(TC)n|Simple_repeat|Simple_repeat	1841	NM_004984	3798		NM_004984	ENSG00000155980	KIF5A	ALS25|D12S1889|MY050|NEIMY|NKHC|SPG10	kinesin family member 5A	protein-coding
171676	chr3	197731321	197731580	+	0	NA	intron (NM_001145642, intron 1 of 20)	SVA_D|Retroposon|SVA	5454	NM_014687	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
129262	chr2	68383371	68383950	+	0	NA	intron (NM_002664, intron 4 of 8)	intron (NM_002664, intron 4 of 8)	18378	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
83461	chr16	27354721	27354980	+	0	NA	intron (NM_001257997, intron 6 of 9)	L2c|LINE|L2	40876	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
229551	chr9	122914721	122915150	+	0	NA	TTS (NM_020924)	TTS (NM_020924)	-1612	NM_006626	10773		NM_006626	ENSG00000186130	ZBTB6	ZID|ZNF482	zinc finger and BTB domain containing 6	protein-coding
9407	chr1	47449121	47449500	+	0	NA	Intergenic	Intergenic	11266	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
219504	chr8	73970201	73970400	+	0	NA	intron (NM_001204858, intron 1 of 4)	intron (NM_001204858, intron 1 of 4)	1608	NM_001204861	6921		NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
140284	chr2	232345421	232345680	+	0	NA	Intergenic	Intergenic	-33201	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
109330	chr19	595551	597000	+	0	NA	intron (NM_001194, intron 1 of 7)	intron (NM_001194, intron 1 of 7)	6394	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
117790	chr19	29838871	29839230	+	0	NA	Intergenic	Intergenic	27059	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
157710	chr22	46403621	46404350	+	0	NA	intron (NM_001378328, intron 9 of 34)	AluSx1|SINE|Alu	68271	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
170573	chr3	186821121	186822130	+	0	NA	intron (NR_125409, intron 3 of 3)	intron (NR_125409, intron 3 of 3)	3896	NR_125409	102724699		NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
44647	chr11	110300071	110300230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3438	NM_001260493	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
15535	chr1	150531071	150531230	+	0	NA	Intergenic	Intergenic	15393	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
4916	chr1	23877551	23877650	+	0	NA	intron (NM_001841, intron 1 of 1)	AluY|SINE|Alu	-9310	NM_000147	2517		NM_000147	ENSG00000179163	FUCA1	FUCA	alpha-L-fucosidase 1	protein-coding
150331	chr21	42073221	42073680	+	0	NA	intron (NM_173568, intron 1 of 21)	intron (NM_173568, intron 1 of 21)	2133	NM_001004416	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
198459	chr6	106145821	106146080	+	0	NA	Intergenic	Intergenic	47009	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
149481	chr21	31957321	31957980	+	0	NA	intron (NM_014586, intron 4 of 10)	intron (NM_014586, intron 4 of 10)	84630	NM_014586	30811		NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
208538	chr7	70678621	70679050	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-453309	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
183102	chr5	74630171	74630900	+	0	NA	intron (NR_046318, intron 1 of 1)	intron (NR_046318, intron 1 of 1)	-9488	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
46763	chr11	129836521	129837180	+	0	NA	intron (NM_001331212, intron 2 of 6)	L1MB7|LINE|L1	21002	NM_138788	120224		NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
150004	chr21	37009821	37010400	+	0	NA	intron (NM_001317777, intron 2 of 2)	intron (NM_001317777, intron 2 of 2)	3408	NM_018962	53820		NM_018962	ENSG00000183145	RIPPLY3	DSCR6	ripply transcriptional repressor 3	protein-coding
216950	chr8	22989701	22989930	+	0	NA	intron (NM_001160036, intron 1 of 11)	intron (NM_001160036, intron 1 of 11)	2564	NM_001160036	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
239213	chrY	12926521	12927500	+	0	NA	Intergenic	Intergenic	21305	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
63642	chr14	20881201	20881480	+	0	NA	Intergenic	AluSc|SINE|Alu	-10063	NM_002935	6037		NM_002935	ENSG00000169397	RNASE3	ECP|RAF1|RNS3	ribonuclease A family member 3	protein-coding
224371	chr9	7879651	7880150	+	0	NA	Intergenic	L1PA8|LINE|L1	-80122	NM_001318059	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
18122	chr1	160726321	160727170	+	0	NA	Intergenic	LTR36|LTR|ERV1	-12312	NM_001282594	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
25397	chr10	6516401	6517280	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	63436	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
38494	chr11	45872001	45872230	+	0	NA	exon (NM_001127457, exon 11 of 12)	exon (NM_001127457, exon 11 of 12)	-13536	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
168376	chr3	141909421	141909880	+	0	NA	intron (NM_001679, intron 3 of 6)	L2a|LINE|L2	33007	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
157567	chr22	45948301	45948500	+	0	NA	intron (NM_058238, intron 2 of 3)	intron (NM_058238, intron 2 of 3)	28762	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
84384	chr16	30290571	30290730	+	0	NA	intron (NR_002453, intron 10 of 12)	intron (NR_002453, intron 10 of 12)	-42237	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
9097	chr1	45117471	45117950	+	0	NA	intron (NM_020883, intron 1 of 13)	intron (NM_020883, intron 1 of 13)	88895	NM_020883	57643		NM_020883	ENSG00000162415	ZSWIM5	-	zinc finger SWIM-type containing 5	protein-coding
136064	chr2	172912401	172912600	+	0	NA	intron (NM_001282900, intron 1 of 26)	MLT1G3-int|LTR|ERVL-MaLR	-15652	NM_001282901	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
126987	chr2	36645921	36646480	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-48032	NM_001042548	9637		NM_005102	ENSG00000171055	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2	protein-coding
216600	chr8	22048721	22049830	+	0	NA	TTS (NM_003867)	TTS (NM_003867)	344	NM_001323382	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
140330	chr2	232537151	232537330	+	0	NA	TTS (NM_001311196)	TTS (NM_001311196)	-2452	NM_005199	1146		NM_005199	ENSG00000196811	CHRNG	ACHRG	cholinergic receptor nicotinic gamma subunit	protein-coding
159480	chr3	14149451	14149550	+	0	NA	intron (NR_148951, intron 9 of 13)	AluSx1|SINE|Alu	24448	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
3020	chr1	12087301	12088260	+	0	NA	intron (NM_001243, intron 2 of 14)	intron (NM_001243, intron 2 of 14)	24403	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
109284	chr19	549171	549330	+	0	NA	intron (NM_001258351, intron 4 of 4)	intron (NM_001258351, intron 4 of 4)	5197	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
116106	chr19	17299251	17299550	+	0	NA	intron (NM_024527, intron 2 of 4)	AluY|SINE|Alu	-3465	NM_001382342	64981		NM_023937	ENSG00000130312	MRPL34	L34mt|bL34m	mitochondrial ribosomal protein L34	protein-coding
203629	chr7	961651	962280	+	0	NA	Intergenic	(TCTGTCA)n|Simple_repeat|Simple_repeat	-6558	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
133627	chr2	126736371	126736530	+	0	NA	Intergenic	Intergenic	80292	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
40135	chr11	62837751	62838350	+	0	NA	5' UTR (NM_001369448, exon 4 of 12)	5' UTR (NM_001369448, exon 4 of 12)	1540	NM_001369450	54663		NM_018093	ENSG00000133316	WDR74	Nsa1	WD repeat domain 74	protein-coding
94206	chr17	28598571	28600230	+	0	NA	promoter-TSS (NM_006461)	promoter-TSS (NM_006461)	267	NR_040012	100506436		NR_040012		SPAG5-AS1	-	SPAG5 antisense RNA 1	ncRNA
164171	chr3	56790001	56791300	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	11299	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
26273	chr10	14837251	14839100	+	0	NA	promoter-TSS (NM_001378785)	promoter-TSS (NM_001378785)	-131	NM_016299	51182		NM_016299	ENSG00000187522	HSPA14	HSP70-4|HSP70L1|MSANTD7	heat shock protein family A (Hsp70) member 14	protein-coding
50488	chr12	47784251	47784750	+	0	NA	intron (NR_160435, intron 23 of 24)	intron (NR_160435, intron 23 of 24)	11262	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
190724	chr6	312451	312550	+	0	NA	intron (NR_104473, intron 3 of 5)	intron (NR_104473, intron 3 of 5)	20443	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
103743	chr17	78893251	78893350	+	0	NA	intron (NM_001243541, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	9901	NM_001243540	100653515		NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
187767	chr5	145825621	145825900	+	0	NA	intron (NM_205846, intron 1 of 6)	intron (NM_205846, intron 1 of 6)	9582	NM_182960	153768		NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
27476	chr10	32048971	32049130	+	0	NA	intron (NM_004521, intron 1 of 25)	AluJb|SINE|Alu	7375	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
130118	chr2	74552301	74552550	+	0	NA	exon (NM_032603, exon 2 of 14)	exon (NM_032603, exon 2 of 14)	1517	NM_032603	84695		NM_032603	ENSG00000115318	LOXL3	LOXL|MYP28	lysyl oxidase like 3	protein-coding
201920	chr6	151391501	151392400	+	0	NA	promoter-TSS (NM_020861)	promoter-TSS (NM_020861)	-391	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
29594	chr10	71739321	71739630	+	0	NA	intron (NM_022124, intron 33 of 67)	intron (NM_022124, intron 33 of 67)	-1625	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
224908	chr9	32550201	32551500	+	0	NA	promoter-TSS (NM_001349119)	promoter-TSS (NM_001349119)	-294	NM_001349118	100129250		NM_001349118	ENSG00000235453	SMIM27	C9orf133|TOPORS-AS1	small integral membrane protein 27	protein-coding
22480	chr1	221719301	221719700	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	17400	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
35949	chr11	2532701	2533900	+	0	NA	intron (NM_181798, intron 2 of 15)	intron (NM_181798, intron 2 of 15)	71846	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
186483	chr5	138082151	138082250	+	0	NA	Intergenic	Intergenic	-1692	NM_058244	7478		NM_031933	ENSG00000061492	WNT8A	WNT8D	Wnt family member 8A	protein-coding
31941	chr10	100652051	100652350	+	0	NA	Intergenic	Intergenic	-83196	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
74109	chr15	52804571	52804930	+	0	NA	Intergenic	Intergenic	-14414	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
34976	chr11	503051	503750	+	0	NA	intron (NM_203389, intron 1 of 9).2	intron (NM_203389, intron 1 of 9).2	3368	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
219165	chr8	66492151	66492250	+	0	NA	Intergenic	Intergenic	-1366	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
98836	chr17	48426051	48426880	+	0	NA	intron (NM_001075099, intron 1 of 12)	intron (NM_001075099, intron 1 of 12)	3749	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
41632	chr11	66474221	66474680	+	0	NA	intron (NR_120586, intron 2 of 3)	intron (NR_120586, intron 2 of 3)	5799	NR_120586	101928069		NR_120586	ENSG00000255517	DPP3-DT	-	DPP3 divergent transcript	ncRNA
114772	chr19	13749721	13750030	+	0	NA	intron (NM_001320569, intron 1 of 8)	AluY|SINE|Alu	1980	NM_001320569	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
26086	chr10	13158171	13158900	+	0	NA	Intergenic	(CCG)n|Simple_repeat|Simple_repeat	-3023	NM_182751	55388		NM_018518	ENSG00000065328	MCM10	CNA43|DNA43|IMD80|PRO2249	minichromosome maintenance 10 replication initiation factor	protein-coding
228176	chr9	97398921	97399700	+	0	NA	Intergenic	Intergenic	-2619	NR_026847	286359		NM_182600		LOC286359	-	uncharacterized LOC286359	ncRNA
224658	chr9	20997471	20997830	+	0	NA	Intergenic	Intergenic	33990	NM_001321883	401494		NM_001010915	ENSG00000188921	HACD4	PTPLAD2	3-hydroxyacyl-CoA dehydratase 4	protein-coding
183474	chr5	79253451	79254350	+	0	NA	intron (NM_152405, intron 1 of 10)	AluJb|SINE|Alu	17769	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
128670	chr2	61465571	61466330	+	0	NA	intron (NM_014709, intron 1 of 79)	AluY|SINE|Alu	5137	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
235500	chrX	47142871	47143030	+	0	NA	intron (NM_001135998, intron 1 of 2)	L2a|LINE|L2	1752	NM_001135998	54539		NM_019056	ENSG00000147123	NDUFB11	CI-ESSS|ESSS|MC1DN30|NP17.3|Np15|P17.3	NADH:ubiquinone oxidoreductase subunit B11	protein-coding
178592	chr4	151659121	151659380	+	0	NA	intron (NM_001109977, intron 13 of 13)	intron (NM_001109977, intron 13 of 13)	101757	NM_004564	5188		NM_004564	ENSG00000059691	GATB	COXPD41|HSPC199|PET112|PET112L	glutamyl-tRNA amidotransferase subunit B	protein-coding
78981	chr15	101650021	101650600	+	0	NA	intron (NM_001307960, intron 1 of 4)	MIRc|SINE|MIR	2071	NM_078474	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
61064	chr13	48301671	48302350	+	0	NA	intron (NR_046414, intron 2 of 2)	intron (NR_046414, intron 2 of 2)	1692	NR_046414	100862704		NR_046414	ENSG00000231473	RB1-DT	LINC00441|ncRNA-RB1	RB1 divergent transcript	ncRNA
191526	chr6	11376951	11377350	+	0	NA	intron (NR_073131, intron 1 of 9)	MSTB-int|LTR|ERVL-MaLR	5198	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
86035	chr16	57541371	57541530	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-1193	NM_153837	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
205493	chr7	17907151	17907600	+	0	NA	intron (NM_015132, intron 1 of 25)	intron (NM_015132, intron 1 of 25)	33119	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
42256	chr11	68127951	68128730	+	0	NA	Intergenic	CpG	-6952	NM_001376220	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
97472	chr17	43770371	43770930	+	0	NA	intron (NM_004090, intron 2 of 2)	AluSx3|SINE|Alu	8327	NM_004090	1845		NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
204095	chr7	2115301	2115500	+	0	NA	intron (NM_001304524, intron 9 of 16)	CpG	-26348	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
139383	chr2	221576951	221577250	+	0	NA	Intergenic	L1PB1|LINE|L1	-2898	NM_001304536	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
24202	chr1	236064251	236065700	+	0	NA	exon (NM_002508, exon 1 of 20)	exon (NM_002508, exon 1 of 20)	115	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
220346	chr8	99358501	99358800	+	0	NA	intron (NM_152564, intron 19 of 61)	intron (NM_152564, intron 19 of 61)	178080	NR_030329	693184		NR_030329	ENSG00000207804	MIR599	MIRN599|hsa-mir-599	microRNA 599	ncRNA
71820	chr15	22158721	22158980	+	0	NA	Intergenic	LTR32|LTR|ERVL	2080	NR_135695	102724760		NR_135695		LOC102724760	-	immunoglobulin heavy variable 1/OR15-1 pseudogene	pseudo
66660	chr14	63893651	63894150	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	40896	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
125259	chr2	10433721	10434030	+	0	NA	Intergenic	Intergenic	12974	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
30076	chr10	73879551	73880680	+	0	NA	Intergenic	MIRb|SINE|MIR	-5524	NM_172171	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
190623	chr5	181191201	181193050	+	0	NA	promoter-TSS (NR_108031)	promoter-TSS (NR_108031)	-217	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
187510	chr5	142359151	142359250	+	0	NA	intron (NR_120664, intron 3 of 3)	MIR3|SINE|MIR	33907	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
103644	chr17	78761651	78762330	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	20218	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
31778	chr10	98166301	98166500	+	0	NA	intron (NM_001256621, intron 3 of 7)	MLT1A0|LTR|ERVL-MaLR	31743	NM_001256619	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
170240	chr3	184224271	184225080	+	0	NA	Intergenic	Intergenic	-5678	NM_138345	90113		NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
132893	chr2	111356621	111357000	+	0	NA	intron (NR_136165, intron 1 of 3)	intron (NR_136165, intron 1 of 3)	-35719	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
1834	chr1	6252021	6252280	+	0	NA	intron (NM_207370, intron 3 of 5)	intron (NM_207370, intron 3 of 5)	7971	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
19519	chr1	175514551	175515050	+	0	NA	intron (NM_001328635, intron 2 of 22)	intron (NM_001328635, intron 2 of 22)	228795	NM_001328635	7143		NM_003285	ENSG00000116147	TNR	NEDSTO|TN-R	tenascin R	protein-coding
96082	chr17	39607671	39608280	+	0	NA	promoter-TSS (NM_006160)	promoter-TSS (NM_006160)	-55	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
209314	chr7	76069151	76069450	+	0	NA	Intergenic	Intergenic	21194	NM_001282403	4191		NM_005918	ENSG00000146701	MDH2	DEE51|EIEE51|M-MDH|MDH|MGC:3559|MOR1	malate dehydrogenase 2	protein-coding
28832	chr10	62376551	62377050	+	0	NA	exon (NM_014951, exon 2 of 5)	exon (NM_014951, exon 2 of 5)	-1673	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
163407	chr3	50540271	50540650	+	0	NA	Intergenic	L2b|LINE|L2	27287	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
54549	chr12	92147621	92148030	+	0	NA	intron (NR_135036, intron 2 of 2)	intron (NR_135036, intron 2 of 2)	1740	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
184686	chr5	108681351	108681650	+	0	NA	Intergenic	Intergenic	46761	NR_046368	100652853		NR_046368		LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
66695	chr14	64203351	64203650	+	0	NA	intron (NM_015180, intron 100 of 114)	intron (NM_015180, intron 100 of 114)	-10644	NM_182913	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
30283	chr10	75213151	75213450	+	0	NA	intron (NM_003375, intron 4 of 10)	AluSz|SINE|Alu	3146	NM_001184783	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
78792	chr15	99443001	99443200	+	0	NA	Intergenic	Intergenic	-122317	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
55576	chr12	106297721	106297980	+	0	NA	Intergenic	Intergenic	-4883	NM_001286262	255394		NM_152772	ENSG00000166046	TCP11L2	-	t-complex 11 like 2	protein-coding
181006	chr5	35833201	35835050	+	0	NA	Intergenic	Intergenic	-22766	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
144515	chr20	35698641	35700030	+	0	NA	promoter-TSS (NM_001198989)	promoter-TSS (NM_001198989)	17	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
49401	chr12	22536151	22536250	+	0	NA	intron (NR_169598, intron 2 of 24)	L1ME4b|LINE|L1	7997	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
49895	chr12	39406321	39407150	+	0	NA	intron (NM_001378440, intron 1 of 36)	intron (NM_001378440, intron 1 of 36)	36385	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
177775	chr4	122762301	122763100	+	0	NA	Intergenic	Intergenic	29996	NM_152618	166379		NM_152618	ENSG00000181004	BBS12	C4orf24	Bardet-Biedl syndrome 12	protein-coding
57765	chr12	122984321	122984580	+	0	NA	3' UTR (NM_020845, exon 26 of 26)	3' UTR (NM_020845, exon 26 of 26)	4390	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
188511	chr5	154945421	154946250	+	0	NA	intron (NM_001014990, intron 2 of 5)	intron (NM_001014990, intron 2 of 5)	4762	NM_001014990	29093		NM_014180	ENSG00000082515	MRPL22	HSPC158|L22mt|MRP-L22|MRP-L25|RPML25|uL22m	mitochondrial ribosomal protein L22	protein-coding
44464	chr11	104966601	104966800	+	0	NA	intron (NM_033306, intron 1 of 9)	intron (NM_033306, intron 1 of 9)	1874	NM_001225	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
71342	chr14	105446121	105446580	+	0	NA	intron (NM_001203258, intron 3 of 20)	intron (NM_001203258, intron 3 of 20)	26523	NM_001203258	9112		NM_004689	ENSG00000182979	MTA1	-	metastasis associated 1	protein-coding
194621	chr6	33566521	33566780	+	0	NA	Intergenic	AluJr|SINE|Alu	13626	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
233592	chrX	318701	319850	+	0	NA	promoter-TSS (NM_012227)	promoter-TSS (NM_012227)	130	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
38518	chr11	45892151	45892450	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	6649	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
228392	chr9	99128951	99129530	+	0	NA	intron (NM_001130916, intron 2 of 7)	MIR3|SINE|MIR	24127	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
202391	chr6	157839871	157840230	+	0	NA	intron (NM_016224, intron 1 of 17)	L2a|LINE|L2	16804	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
35146	chr11	727751	728780	+	0	NA	TTS (NM_022772)	TTS (NM_022772)	-19199	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
1179	chr1	2226901	2228500	+	0	NA	promoter-TSS (NM_003036)	promoter-TSS (NM_003036)	-619	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
120972	chr19	45713821	45714080	+	0	NA	intron (NM_001329633, intron 1 of 1)	AluSq2|SINE|Alu	1328	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
188836	chr5	159104921	159105650	+	0	NA	intron (NR_109890, intron 1 of 2)	intron (NR_109890, intron 1 of 2)	4802	NR_109890	101927740		NR_109890	ENSG00000245812	LINC02202	-	long intergenic non-protein coding RNA 2202	ncRNA
74906	chr15	63612151	63612650	+	0	NA	exon (NM_003922, exon 77 of 78)	exon (NM_003922, exon 77 of 78)	-11573	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
34179	chr10	128124171	128124650	+	0	NA	intron (NM_001145966, intron 2 of 13)	MER20|DNA|hAT-Charlie	2013	NM_002417	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
211195	chr7	102606821	102607480	+	0	NA	intron (NM_001079877, intron 4 of 19)	MIR3|SINE|MIR	9606	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
49860	chr12	35518551	35518650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1496104	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
84492	chr16	30490221	30490880	+	0	NA	intron (NM_002209, intron 11 of 30)	MER74B|LTR|ERVL	-13369	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
98281	chr17	46216021	46216280	+	0	NA	intron (NM_001193465, intron 2 of 15)	L2c|LINE|L2	9217	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
181581	chr5	43306001	43306880	+	0	NA	intron (NM_002130, intron 1 of 9)	intron (NM_002130, intron 1 of 9)	6741	NM_001330663	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
171744	chr3	198085951	198086050	+	0	NA	Intergenic	L1MB4|LINE|L1	-5329	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
210708	chr7	100583201	100585000	+	0	NA	intron (NM_001289934, intron 1 of 17)	intron (NM_001289934, intron 1 of 17)	2029	NM_002319	4034		NM_002319	ENSG00000077454	LRCH4	LRN|LRRN1|LRRN4|PP14183	leucine rich repeats and calponin homology domain containing 4	protein-coding
169937	chr3	179021271	179021430	+	0	NA	non-coding (NR_164720, exon 6 of 6)	non-coding (NR_164720, exon 6 of 6)	47992	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
57790	chr12	123074351	123074450	+	0	NA	intron (NM_001300801, intron 2 of 25)	(CA)n|Simple_repeat|Simple_repeat	-6984	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
38382	chr11	44725651	44725950	+	0	NA	Intergenic	AluJb|SINE|Alu	-1162	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
168227	chr3	141306771	141308730	+	0	NA	Intergenic	Intergenic	-16436	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
168343	chr3	141880321	141880600	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	3817	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
235206	chrX	41354001	41354950	+	0	NA	intron (NR_126093, intron 17 of 18)	AluJr|SINE|Alu	20309	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
30694	chr10	80527951	80528530	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	7702	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
134430	chr2	143130401	143131030	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	1296	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
209881	chr7	91265321	91265580	+	0	NA	exon (NM_003505, exon 1 of 1)	exon (NM_003505, exon 1 of 1)	1017	NM_003505	8321		NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
191220	chr6	5681671	5681830	+	0	NA	intron (NR_110842, intron 2 of 3)	intron (NR_110842, intron 2 of 3)	13522	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
121127	chr19	46017871	46018030	+	0	NA	promoter-TSS (NR_030412)	promoter-TSS (NR_030412)	-982	NR_030412	768217		NR_030412	ENSG00000211580	MIR769	MIRN769|hsa-mir-769|mir-769	microRNA 769	ncRNA
43381	chr11	77049051	77049350	+	0	NA	Intergenic	Intergenic	14802	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
175426	chr4	71004101	71005250	+	0	NA	intron (NM_000788, intron 2 of 6)	L1P3|LINE|L1	11026	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
117974	chr19	33373201	33374850	+	0	NA	promoter-TSS (NM_001252296)	promoter-TSS (NM_001252296)	316	NM_001806	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
160173	chr3	23349651	23349750	+	0	NA	intron (NM_001370225, intron 3 of 5)	L1PA3|LINE|L1	146373	NM_001370228	7325		NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
115167	chr19	14424221	14424900	+	0	NA	Intergenic	AluJo|SINE|Alu	-5177	NR_046366	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
220079	chr8	93992821	93993080	+	0	NA	Intergenic	Intergenic	76003	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
33450	chr10	119040971	119041130	+	0	NA	intron (NM_003750, intron 19 of 21)	AluSz|SINE|Alu	11336	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
184269	chr5	96722721	96722980	+	0	NA	intron (NM_001375317, intron 4 of 30)	intron (NM_001375317, intron 4 of 30)	20190	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
80579	chr16	2869871	2870500	+	0	NA	Intergenic	Intergenic	-12015	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
154039	chr22	30505421	30505680	+	0	NA	intron (NM_174977, intron 1 of 11)	CpG	145	NM_001161368	284904		NM_174977	ENSG00000133488	SEC14L4	TAP3	SEC14 like lipid binding 4	protein-coding
236133	chrX	57908671	57908830	+	0	NA	exon (NM_007156, exon 1 of 1)	exon (NM_007156, exon 1 of 1)	1708	NM_007156	7789		NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger X-linked duplicated A	protein-coding
70006	chr14	100071621	100072080	+	0	NA	intron (NM_016337, intron 1 of 13)	intron (NM_016337, intron 1 of 13)	6428	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
187216	chr5	140708701	140709100	+	0	NA	Intergenic	AluY|SINE|Alu	-2376	NR_026703	56664		NR_026703	ENSG00000199990	VTRNA1-1	HVG1|VAULTRC1|VR1|hvg-1|vRNA	vault RNA 1-1	ncRNA
10524	chr1	66940701	66940900	+	0	NA	intron (NM_001350530, intron 5 of 15)	MER102c|DNA|hAT-Charlie	10544	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
71708	chr15	20340301	20341300	+	0	NA	Intergenic	(AGCCAGCCA)n|Simple_repeat|Simple_repeat	58056	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
170546	chr3	186779701	186779900	+	0	NA	Intergenic	AluSz|SINE|Alu	-3777	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
45124	chr11	117181151	117182680	+	0	NA	exon (NM_001040455, exon 3 of 26)	exon (NM_001040455, exon 3 of 26)	3172	NM_001040455	51092		NM_015996	ENSG00000149577	SIDT2	CGI-40	SID1 transmembrane family member 2	protein-coding
90740	chr17	2028751	2029150	+	0	NA	Intergenic	Intergenic	-1162	NM_001346574	1801		NM_001383	ENSG00000108963	DPH1	DEDSSH|DPH2L|DPH2L1|OVCA1	diphthamide biosynthesis 1	protein-coding
8310	chr1	40064501	40065100	+	0	NA	intron (NM_001350483, intron 6 of 12)	AluJb|SINE|Alu	23774	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
111945	chr19	4795501	4795700	+	0	NA	3' UTR (NM_018708, exon 1 of 1)	3' UTR (NM_018708, exon 1 of 1)	3866	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
127671	chr2	43178501	43179500	+	0	NA	Intergenic	Intergenic	47606	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
50863	chr12	49176651	49177150	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	12180	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
52306	chr12	54750301	54750500	+	0	NA	Intergenic	AluSp|SINE|Alu	-102035	NM_001300854	117159		NM_053283	ENSG00000161634	DCD	AIDD|DCD-1|DSEP|HCAP|PIF	dermcidin	protein-coding
179678	chr4	190047651	190048100	+	0	NA	Intergenic	LTR43-int|LTR|ERV1	-16627	NR_121644	100419743		NR_121644	ENSG00000281591	DBET	DBE-T|DUX4L30	D4Z4 binding element transcript	ncRNA
188497	chr5	154815701	154816100	+	0	NA	3' UTR (NM_001367717, exon 19 of 19)	3' UTR (NM_001367717, exon 19 of 19)	-13558	NR_039667	100616306		NR_039667	ENSG00000263361	MIR378H	-	microRNA 378h	ncRNA
146979	chr20	53000921	53001400	+	0	NA	intron (NM_173485, intron 1 of 2)	intron (NM_173485, intron 1 of 2)	28802	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
88530	chr16	85410801	85411380	+	0	NA	Intergenic	Intergenic	-104765	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
143917	chr20	32626521	32627850	+	0	NA	Intergenic	Intergenic	39706	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
171643	chr3	197614051	197614150	+	0	NA	TTS (NR_003266)	TTS (NR_003266)	13781	NR_003266	220729		NR_003266	ENSG00000291091	SDHAP4	-	SDHA pseudogene 4	pseudo
130722	chr2	86746821	86747180	+	0	NA	intron (NM_022780, intron 2 of 8)	intron (NM_022780, intron 2 of 8)	-25878	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
127358	chr2	39203571	39203930	+	0	NA	intron (NR_144520, intron 4 of 8)	intron (NR_144520, intron 4 of 8)	25838	NM_001346911	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
154333	chr22	32200621	32201330	+	0	NA	intron (NM_001364986, intron 2 of 5)	intron (NM_001364986, intron 2 of 5)	2502	NM_001098527	10739		NM_006605	ENSG00000128253	RFPL2	RNF79	ret finger protein like 2	protein-coding
148567	chr20	64286601	64287750	+	0	NA	Intergenic	(AGGGTT)n|Simple_repeat|Simple_repeat	-3210	NR_040415	107126285		NR_040415		SEPTIN14P20	C20orf69|LINC00266-1|NCRNA00266|NCRNA00266-1|RBRP|SEPT14P20|bA476I15.3	septin 14 pseudogene 20	pseudo
179351	chr4	183183371	183183550	+	0	NA	intron (NM_024949, intron 1 of 22)	L1ME4c|LINE|L1	57174	NR_126473	101928734		NR_126473	ENSG00000251128	WWC2-AS1	-	WWC2 antisense RNA 1	ncRNA
222075	chr8	130342951	130343250	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-46567	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
199528	chr6	118736271	118736630	+	0	NA	Intergenic	AluY|SINE|Alu	-26375	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
83728	chr16	28553551	28555180	+	0	NA	intron (NM_138414, intron 1 of 9)	CpG	445	NM_138414	112869		NM_138414	ENSG00000176476	SGF29	CCDC101|STAF36|TDRD29	SAGA complex associated factor 29	protein-coding
196062	chr6	42177901	42178500	+	0	NA	intron (NM_001384910, intron 1 of 3)	CpG	4836	NM_001384910	2978		NM_001384910	ENSG00000048545	GUCA1A	C6orf131|COD3|CORD14|GCAP|GCAP-1|GCAP-I|GCAP1|GUCA|GUCA1	guanylate cyclase activator 1A	protein-coding
215809	chr8	2480921	2481380	+	0	NA	Intergenic	CpG	142215	NR_125423	101927815		NR_125423	ENSG00000254319	LINC03021	-	long intergenic non-protein coding RNA 3021	ncRNA
74337	chr15	58520101	58520500	+	0	NA	intron (NM_000236, intron 1 of 8)	Charlie15a|DNA|hAT-Charlie	-21565	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
220373	chr8	99892771	99894400	+	0	NA	intron (NM_004374, intron 1 of 3)	CpG	122	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
52455	chr12	55939921	55940750	+	0	NA	exon (NM_201444, exon 11 of 24)	exon (NM_201444, exon 11 of 24)	4327	NM_001351037	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
128993	chr2	64753071	64753230	+	0	NA	Intergenic	AluSx|SINE|Alu	-99237	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
23502	chr1	228737551	228738180	+	0	NA	intron (NM_021205, intron 2 of 2)	intron (NM_021205, intron 2 of 2)	2386	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
16946	chr1	155924121	155924380	+	0	NA	intron (NM_014949, intron 7 of 13)	AluY|SINE|Alu	1836	NR_003005	677771		NR_003005	ENSG00000281394	SCARNA4	ACA26	small Cajal body-specific RNA 4	ncRNA
117038	chr19	18932121	18933450	+	0	NA	intron (NM_001145721, intron 6 of 9)	intron (NM_001145721, intron 6 of 9)	6264	NM_001145724	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
53249	chr12	62602451	62604050	+	0	NA	promoter-TSS (NR_029661)	promoter-TSS (NR_029661)	184	NR_121682	283416		NM_175895	ENSG00000221949	LINC01465	C12orf61	long intergenic non-protein coding RNA 1465	ncRNA
183855	chr5	87120151	87120800	+	0	NA	intron (NR_105018, intron 1 of 3)	L2a|LINE|L2	327	NR_105018	101929380		NR_105018		LOC101929380	-	uncharacterized LOC101929380	ncRNA
206180	chr7	28128701	28128900	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-51657	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
121292	chr19	46725621	46725950	+	0	NA	intron (NM_001039877, intron 9 of 17)	intron (NM_001039877, intron 9 of 17)	-8658	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
106686	chr18	23237471	23238080	+	0	NA	intron (NM_138375, intron 7 of 9)	intron (NM_138375, intron 7 of 9)	81950	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
145893	chr20	45956951	45958200	+	0	NA	intron (NM_022095, intron 17 of 27)	intron (NM_022095, intron 17 of 27)	14628	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
7112	chr1	32141421	32141830	+	0	NA	intron (NM_012316, intron 1 of 13)	AluSx1|SINE|Alu	33569	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
212407	chr7	128135371	128136350	+	0	NA	Intergenic	CpG	53999	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
189008	chr5	168534521	168534600	+	0	NA	Intergenic	AluJb|SINE|Alu	5255	NM_001355274	345630		NM_001355274	ENSG00000188573	FBLL1	-	fibrillarin like 1	protein-coding
42413	chr11	69064471	69065030	+	0	NA	intron (NM_139075, intron 7 of 24)	intron (NM_139075, intron 7 of 24)	15818	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
104483	chr17	81127271	81127430	+	0	NA	intron (NM_001080395, intron 6 of 13)	intron (NM_001080395, intron 6 of 13)	-1401	NR_029897	442906		NR_029897	ENSG00000283604	MIR338	MIRN338|hsa-mir-338|mir-338	microRNA 338	ncRNA
19751	chr1	181423571	181424000	+	0	NA	Intergenic	Intergenic	-59732	NM_001205293	777		NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|DEE69|EIEE69|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
11373	chr1	89648551	89649050	+	0	NA	intron (NM_032270, intron 1 of 2)	L1MB7|LINE|L1	15680	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
105085	chr17	82107551	82108130	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-9604	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
151781	chr22	18110321	18111150	+	0	NA	promoter-TSS (NM_018943)	promoter-TSS (NM_018943)	-74	NM_018943	51807		NM_018943	ENSG00000183785	TUBA8	CDCBM8|MACTHC2|TUBAL2	tubulin alpha 8	protein-coding
168192	chr3	141019051	141019350	+	0	NA	Intergenic	Intergenic	-32147	NM_080862	92369		NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
8709	chr1	42321321	42321930	+	0	NA	intron (NM_001198851, intron 2 of 14)	L2c|LINE|L2	13330	NM_001198851	22887		NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
236716	chrX	77967271	77967430	+	0	NA	TTS (NM_001029891)	TTS (NM_001029891)	2288	NM_001029891	441531		NM_001029891	ENSG00000226784	PGAM4	PGAM-B|PGAM1|PGAM3|dJ1000K24.1	phosphoglycerate mutase family member 4	protein-coding
97704	chr17	44326251	44327930	+	0	NA	Intergenic	Intergenic	-2220	NM_001321240	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
93506	chr17	19000321	19000780	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	4214	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
148710	chr21	6498851	6499880	+	0	NA	promoter-TSS (NM_001320648)	promoter-TSS (NM_001320648)	-81	NM_001320651	102724594		NM_001320646	ENSG00000275895	LOC102724594	U2AF1L5	U2 small nuclear RNA auxiliary factor 1 like 5	protein-coding
58688	chr12	132550051	132550700	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-31622	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
103776	chr17	78995301	78995900	+	0	NA	intron (NM_001159772, intron 4 of 5)	intron (NM_001159772, intron 4 of 5)	14164	NM_001159772	124583		NM_138793	ENSG00000171302	CANT1	DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
11425	chr1	89742521	89742780	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-78382	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
118460	chr19	35878701	35879230	+	0	NA	intron (NM_001024807, intron 15 of 16)	intron (NM_001024807, intron 15 of 16)	10391	NM_001024807	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
234414	chrX	16792751	16793100	+	0	NA	intron (NM_001168683, intron 1 of 7)	AluSx|SINE|Alu	6459	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
83183	chr16	23485401	23486230	+	0	NA	intron (NM_015044, intron 8 of 16)	L1ME1|LINE|L1	24679	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
118791	chr19	38402421	38404080	+	0	NA	intron (NM_174905, intron 1 of 7)	CpG	115	NM_001351675	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
158711	chr3	8327821	8328080	+	0	NA	intron (NR_033378, intron 3 of 3)	MIRb|SINE|MIR	173708	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
29418	chr10	70231721	70232700	+	0	NA	intron (NM_021129, intron 1 of 10)	intron (NM_021129, intron 1 of 10)	1219	NM_021129	5464		NM_021129	ENSG00000180817	PPA1	HEL-S-66p|IOPPP|PP|PP1|SID6-8061	inorganic pyrophosphatase 1	protein-coding
52937	chr12	57432951	57433250	+	0	NA	Intergenic	LTR56|LTR|ERV1	-1684	NM_005538	3626		NM_005538	ENSG00000175189	INHBC	IHBC	inhibin subunit beta C	protein-coding
168049	chr3	136931801	136932000	+	0	NA	intron (NM_001190796, intron 1 of 2)	AluSx1|SINE|Alu	1398	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
228143	chr9	96856501	96857300	+	0	NA	Intergenic	Intergenic	-2386	NM_001346995	158431		NM_001001662	ENSG00000196597	ZNF782	-	zinc finger protein 782	protein-coding
7027	chr1	31922201	31923100	+	0	NA	intron (NM_080391, intron 1 of 5)	AluJb|SINE|Alu	15168	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
183961	chr5	88671951	88672250	+	0	NA	intron (NR_152235, intron 1 of 3)	intron (NR_152235, intron 1 of 3)	1239	NR_152242	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
174571	chr4	40232171	40232530	+	0	NA	intron (NM_001278360, intron 2 of 3)	AluJb|SINE|Alu	35319	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
141780	chr2	242088001	242089150	+	0	NA	promoter-TSS (NR_130699)	promoter-TSS (NR_130699)	-58	NR_130702	728323		NR_024437		LINC01881	-	long intergenic non-protein coding RNA 1881	ncRNA
6763	chr1	30741801	30742000	+	0	NA	intron (NM_006762, intron 2 of 7)	L2b|LINE|L2	-2668	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
61157	chr13	48884371	48884730	+	0	NA	Intergenic	Intergenic	-91362	NM_001079673	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
185190	chr5	119379201	119379400	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	23281	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
238940	chrX	154804851	154805750	+	0	NA	exon (NM_001166461, exon 1 of 12)	exon (NM_001166461, exon 1 of 12)	185	NM_002436	4354		NM_002436	ENSG00000130830	MPP1	AAG12|DXS552E|EMP55|MRG1|PEMP	MAGUK p55 scaffold protein 1	protein-coding
181306	chr5	40225171	40225330	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	172959	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
130895	chr2	87439801	87440280	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-15387	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
24454	chr1	243841701	243842530	+	0	NA	intron (NM_005465, intron 2 of 13)	L1ME1|LINE|L1	1167	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
196178	chr6	42583421	42584050	+	0	NA	intron (NM_001363705, intron 2 of 46)	AluSz|SINE|Alu	19706	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
203724	chr7	1103321	1104250	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	15672	NM_001098201	2852		NM_001505	ENSG00000164850	GPER1	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER	G protein-coupled estrogen receptor 1	protein-coding
61359	chr13	51069851	51070550	+	0	NA	Intergenic	Intergenic	-4043	NR_003923	2974		NM_004129	ENSG00000293412	GUCY1B2	GC-SB2	guanylate cyclase 1 soluble subunit beta 2 (pseudogene)	pseudo
51216	chr12	50598551	50598900	+	0	NA	intron (NM_173602, intron 1 of 37)	(CCCCCTC)n|Simple_repeat|Simple_repeat	93740	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
65351	chr14	50344021	50344530	+	0	NA	intron (NM_001282236, intron 4 of 8)	intron (NM_001282236, intron 4 of 8)	31951	NM_015684	27109		NM_015684	ENSG00000125375	DMAC2L	ATP5S|ATPW|FB|HSU79253	distal membrane arm assembly component 2 like	protein-coding
146946	chr20	52105921	52106180	+	0	NA	promoter-TSS (NM_001319146)	promoter-TSS (NM_001319146)	-566	NM_001319146	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
28802	chr10	62186051	62186550	+	0	NA	Intergenic	Intergenic	82544	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
91789	chr17	7017851	7018730	+	0	NA	promoter-TSS (NR_029712)	promoter-TSS (NR_029712)	-268	NR_030178	574456		NR_030178	ENSG00000284027	MIR497	MIRN497|hsa-mir-497|mir-497	microRNA 497	ncRNA
209014	chr7	74293151	74293650	+	0	NA	intron (NM_032421, intron 1 of 15)	intron (NM_032421, intron 1 of 15)	3993	NM_003388	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
95781	chr17	38700351	38701900	+	0	NA	promoter-TSS (NR_158157).2	promoter-TSS (NR_158157).2	-19	NR_158157	105371763		NR_158157		LOC105371763	-	uncharacterized LOC105371763	ncRNA
25996	chr10	12066671	12066830	+	0	NA	Intergenic	AluY|SINE|Alu	-2204	NM_018706	55526		NM_018706	ENSG00000181192	DHTKD1	AAKAD|AMOXAD|CMT2Q|E1a|OADC-E1|OADH-E1	dehydrogenase E1 and transketolase domain containing 1	protein-coding
37954	chr11	34512901	34513130	+	0	NA	intron (NM_001243080, intron 1 of 4)	intron (NM_001243080, intron 1 of 4)	779	NM_001243080	2001		NM_001422	ENSG00000135374	ELF5	ESE2	E74 like ETS transcription factor 5	protein-coding
19271	chr1	172717171	172717330	+	0	NA	Intergenic	AluY|SINE|Alu	58147	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
170579	chr3	186826771	186827830	+	0	NA	Intergenic	CpG	-1779	NR_125409	102724699		NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
72962	chr15	40486651	40486950	+	0	NA	Intergenic	L1M3f|LINE|L1	15816	NM_130468	113189		NM_130468	ENSG00000169105	CHST14	ATCS|D4ST1|EDSMC1|HNK1ST	carbohydrate sulfotransferase 14	protein-coding
184137	chr5	94792001	94792200	+	0	NA	intron (NM_001297777, intron 15 of 19)	intron (NM_001297777, intron 15 of 19)	173431	NM_032290	84250		NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding
106263	chr18	12376431	12378030	+	0	NA	promoter-TSS (NM_006796)	promoter-TSS (NM_006796)	-3	NM_006796	10939		NM_006796	ENSG00000141385	AFG3L2	OPA12|SCA28|SPAX5	AFG3 like matrix AAA peptidase subunit 2	protein-coding
29850	chr10	72349771	72350130	+	0	NA	intron (NR_157570, intron 1 of 8)	intron (NR_157570, intron 1 of 8)	4969	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
7075	chr1	32020151	32020900	+	0	NA	intron (NR_073498, intron 1 of 8)	L1MD2|LINE|L1	6657	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
27713	chr10	33333621	33334500	+	0	NA	intron (NM_001244973, intron 1 of 16)	intron (NM_001244973, intron 1 of 16)	607	NM_001330068	8829		NM_003873	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
149594	chr21	33299201	33300450	+	0	NA	Intergenic	Intergenic	-24570	NM_001384504	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
101796	chr17	73229951	73230480	+	0	NA	intron (NM_032837, intron 1 of 2)	AluJb|SINE|Alu	2179	NM_001289410	84923		NM_032837	ENSG00000133193	VCF1	FAM104A	VCP nuclear cofactor family member 1	protein-coding
24232	chr1	236154671	236155430	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	12511	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
139083	chr2	218873151	218874280	+	0	NA	exon (NM_006522, exon 4 of 4)	exon (NM_006522, exon 4 of 4)	-7137	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
632	chr1	1334851	1335550	+	0	NA	TTS (NM_001330311)	TTS (NM_001330311)	3920	NM_152228	83756		NM_152228	ENSG00000169962	TAS1R3	T1R3	taste 1 receptor member 3	protein-coding
140217	chr2	231718151	231718600	+	0	NA	Intergenic	AluJb|SINE|Alu	5061	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
158442	chr22	50607051	50607150	+	0	NA	intron (NM_012324, intron 10 of 11)	intron (NM_012324, intron 10 of 11)	6307	NM_012324	23542		NM_012324	ENSG00000008735	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
220046	chr8	93320521	93320780	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-153800	NR_161372	389676		NR_161372	ENSG00000279847	LINC02906	C8orf87	long intergenic non-protein coding RNA 2906	ncRNA
86005	chr16	57472521	57473130	+	0	NA	TTS (NM_032940)	TTS (NM_032940)	6932	NM_001369621	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
192625	chr6	26121251	26121550	+	0	NA	intron (NM_001381989, intron 1 of 1)	intron (NM_001381989, intron 1 of 1)	2526	NM_001381989	8347		NM_003526	ENSG00000180596	H2BC4	H2B.1|H2B/l|H2BC10|H2BC6|H2BC7|H2BC8|H2BFL|HIST1H2BC|dJ221C16.3	H2B clustered histone 4	protein-coding
115239	chr19	14515521	14515800	+	0	NA	3' UTR (NM_006145, exon 3 of 3)	3' UTR (NM_006145, exon 3 of 3)	2202	NM_001300914	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
204395	chr7	3039551	3039650	+	0	NA	intron (NM_001324281, intron 1 of 25)	AluJb|SINE|Alu	4267	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
87142	chr16	69166301	69167330	+	0	NA	intron (NM_032830, intron 15 of 16)	intron (NM_032830, intron 15 of 16)	-20332	NM_006750	6645		NM_006750	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin beta 2	protein-coding
67294	chr14	69475351	69475530	+	0	NA	Intergenic	Intergenic	-9288	NM_001161498	400224		NM_001161498	ENSG00000175985	PLEKHD1	UPF0639	pleckstrin homology and coiled-coil domain containing D1	protein-coding
156691	chr22	41672651	41672750	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	16167	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
116611	chr19	18281001	18282900	+	0	NA	promoter-TSS (NR_036155)	promoter-TSS (NR_036155)	-127	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
20815	chr1	201259651	201259950	+	0	NA	Intergenic	Intergenic	-23652	NM_000299	5317		NM_000299	ENSG00000081277	PKP1	B6P|EDSFS	plakophilin 1	protein-coding
123272	chr19	53504021	53504480	+	0	NA	Intergenic	Intergenic	-16764	NM_018555	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
95823	chr17	38755471	38756050	+	0	NA	intron (NR_104195, intron 2 of 5).2	intron (NR_104195, intron 2 of 5).2	3019	NR_104195	5691		NM_002795	ENSG00000277791	PSMB3	HC10-II	proteasome 20S subunit beta 3	protein-coding
214638	chr7	150745101	150745480	+	0	NA	Intergenic	Intergenic	7942	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
179857	chr5	529121	529380	+	0	NA	Intergenic	Intergenic	-4801	NM_004174	6550		NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
41602	chr11	66373921	66374550	+	0	NA	Intergenic	AluSx|SINE|Alu	-1759	NM_001300868	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
203623	chr7	957301	957500	+	0	NA	Intergenic	Intergenic	-1993	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
98806	chr17	48295071	48296100	+	0	NA	non-coding (NR_131239, exon 2 of 3)	non-coding (NR_131239, exon 2 of 3)	1238	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
95992	chr17	39196891	39198330	+	0	NA	promoter-TSS (NM_199248)	promoter-TSS (NM_199248)	59	NM_199248	782		NM_000723	ENSG00000067191	CACNB1	CAB1|CACNLB1|CCHLB1	calcium voltage-gated channel auxiliary subunit beta 1	protein-coding
49529	chr12	26029271	26029430	+	0	NA	intron (NM_001164747, intron 2 of 5)	intron (NM_001164747, intron 2 of 5)	-23214	NM_001164746	11228		NM_007211	ENSG00000123094	RASSF8	C12orf2|HOJ1	Ras association domain family member 8	protein-coding
60727	chr13	44273301	44273530	+	0	NA	Intergenic	Intergenic	-77215	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
74139	chr15	55250601	55251600	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	19186	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
198453	chr6	106124921	106125180	+	0	NA	Intergenic	MIR3|SINE|MIR	26109	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
126914	chr2	32591821	32592450	+	0	NA	intron (NM_016252, intron 66 of 73)	intron (NM_016252, intron 66 of 73)	-17317	NR_125793	103752586		NR_125793	ENSG00000290864	BIRC6-AS2	linc-birc6|megamind	BIRC6 antisense RNA 2	ncRNA
100594	chr17	63439601	63440650	+	0	NA	intron (NM_001915, intron 1 of 5)	intron (NM_001915, intron 1 of 5)	142	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
54362	chr12	89706651	89706950	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	2038	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
112296	chr19	5861501	5862100	+	0	NA	Intergenic	L2b|LINE|L2	-4678	NM_001382749	2525		NM_000149	ENSG00000171124	FUT3	CD174|FT3B|FucT-III|LE|Les	fucosyltransferase 3 (Lewis blood group)	protein-coding
152216	chr22	20135051	20135350	+	0	NA	intron (NM_001185024, intron 1 of 10)	AluJb|SINE|Alu	3396	NM_013373	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
195915	chr6	41741771	41741930	+	0	NA	intron (NM_001166424, intron 5 of 6)	intron (NM_001166424, intron 5 of 6)	5547	NM_002630	5225		NM_002630	ENSG00000096088	PGC	PEPC|PGII	progastricsin	protein-coding
109217	chr19	479001	479400	+	0	NA	intron (NM_001385599, intron 2 of 4)	LTR3B_|LTR|ERVK	-4217	NM_182577	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
239219	chrY	12932221	12932900	+	0	NA	Intergenic	L1PA12|LINE|L1	26855	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
59974	chr13	32164601	32164930	+	0	NA	intron (NM_023037, intron 17 of 60)	intron (NM_023037, intron 17 of 60)	132991	NM_023037	10129		NM_023037	ENSG00000073910	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	FRY microtubule binding protein	protein-coding
146690	chr20	50537871	50538480	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	27792	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138190	chr2	202658301	202658500	+	0	NA	intron (NM_173511, intron 1 of 7)	AluSz|SINE|Alu	23431	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
94236	chr17	28664501	28664800	+	0	NA	intron (NM_003170, intron 1 of 36)	L2c|LINE|L2	2445	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
238696	chrX	154073171	154073530	+	0	NA	intron (NM_001316337, intron 2 of 4)	L1MC5a|LINE|L1	23619	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
8732	chr1	42686421	42686950	+	0	NA	intron (NM_004559, intron 2 of 7)	intron (NM_004559, intron 2 of 7)	3549	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
135511	chr2	162013621	162014230	+	0	NA	intron (NR_166824, intron 19 of 25)	intron (NR_166824, intron 19 of 25)	60290	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
164432	chr3	59212171	59212430	+	0	NA	Intergenic	Intergenic	-162268	NM_001351534	200844		NM_198463	ENSG00000163689	CFAP20DC	C3orf67	CFAP20 domain containing	protein-coding
40105	chr11	62808051	62808580	+	0	NA	intron (NM_001244666, intron 10 of 10)	AluJb|SINE|Alu	-2875	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
172462	chr4	2036901	2037100	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-4993	NM_001168243	401115		NM_001141936	ENSG00000243449	NICOL1	C4orf48|CHR4_55|NICOL	NELL2 interacting cell ontogeny regulator 1	protein-coding
3023	chr1	12113721	12114200	+	0	NA	intron (NM_001281430, intron 6 of 13)	MLT1G3|LTR|ERVL-MaLR	50583	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
140030	chr2	231103821	231104380	+	0	NA	intron (NM_002807, intron 16 of 24)	intron (NM_002807, intron 16 of 24)	20942	NM_000867	3357		NM_000867	ENSG00000135914	HTR2B	5-HT(2B)|5-HT-2B|5-HT2B	5-hydroxytryptamine receptor 2B	protein-coding
168076	chr3	138172651	138172980	+	0	NA	intron (NM_016216, intron 2 of 7)	L1MC5a|LINE|L1	2106	NM_016216	51163		NM_016216	ENSG00000138231	DBR1	XGIP	debranching RNA lariats 1	protein-coding
135836	chr2	170713001	170713200	+	0	NA	non-coding (NR_027433, exon 1 of 1)	non-coding (NR_027433, exon 1 of 1)	1467	NR_027433	440925		NM_001013712	ENSG00000222033	LINC01124	-	long intergenic non-protein coding RNA 1124	ncRNA
136364	chr2	176094101	176094500	+	0	NA	intron (NM_000523, intron 1 of 1)	intron (NM_000523, intron 1 of 1)	1579	NM_000523	3239		NM_000523	ENSG00000128714	HOXD13	BDE|BDSD|HOX4I|SPD|SPD1	homeobox D13	protein-coding
39290	chr11	58570851	58571150	+	0	NA	intron (NM_001143995, intron 1 of 8)	intron (NM_001143995, intron 1 of 8)	4856	NM_004811	9404		NM_004811	ENSG00000110031	LPXN	LDPL	leupaxin	protein-coding
217926	chr8	38075471	38075730	+	0	NA	Intergenic	AluY|SINE|Alu	-29893	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
34668	chr10	133349351	133349850	+	0	NA	intron (NM_145202, intron 1 of 4)	intron (NM_145202, intron 1 of 4)	2227	NM_145202	118471		NM_145202	ENSG00000165828	PRAP1	PRO1195|UPA	proline rich acidic protein 1	protein-coding
33818	chr10	123559301	123559580	+	0	NA	Intergenic	Intergenic	-106915	NM_153442	2849		NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding
233747	chrX	1386751	1387250	+	0	NA	intron (NM_001636, intron 3 of 3)	intron (NM_001636, intron 3 of 3)	5113	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
224071	chr9	4083921	4084180	+	0	NA	intron (NM_001042413, intron 4 of 10)	intron (NM_001042413, intron 4 of 10)	68133	NM_152629	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
103749	chr17	78919571	78919730	+	0	NA	intron (NM_003255, intron 1 of 4)	AluYm1|SINE|Alu	5737	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
8465	chr1	40774001	40774480	+	0	NA	Intergenic	Intergenic	-9547	NM_004700	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
112268	chr19	5801171	5801530	+	0	NA	Intergenic	Intergenic	-3717	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
150304	chr21	41999271	41999430	+	0	NA	intron (NM_020727, intron 1 of 1)	MER112|DNA|hAT-Charlie	-9844	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
207842	chr7	50345121	50345380	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	26202	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
59627	chr13	27998001	27998200	+	0	NA	Intergenic	Intergenic	-9407	NM_001105577	646625		NM_001105577	ENSG00000183463	URAD	PRHOXNB	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase	protein-coding
40498	chr11	64263751	64265480	+	0	NA	intron (NM_001316314, intron 22 of 31)	intron (NM_001316314, intron 22 of 31)	-5916	NM_001378076	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
21247	chr1	204362271	204362500	+	0	NA	Intergenic	Intergenic	-2456	NM_014935	22874		NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
60915	chr13	46179371	46180580	+	0	NA	intron (NM_002298, intron 1 of 15)	(TC)n|Simple_repeat|Simple_repeat	2202	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
33111	chr10	111077351	111077450	+	0	NA	5' UTR (NM_000681, exon 1 of 1)	5' UTR (NM_000681, exon 1 of 1)	371	NM_000681	150		NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|FPLD8|ZNF32	adrenoceptor alpha 2A	protein-coding
202436	chr6	157984371	157984530	+	0	NA	intron (NM_003898, intron 1 of 26)	AluSq|SINE|Alu	2587	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
238668	chrX	154028551	154028850	+	0	NA	3' UTR (NM_001316337, exon 5 of 5)	3' UTR (NM_001316337, exon 5 of 5)	-8711	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
150031	chr21	37281701	37282300	+	0	NA	Intergenic	Intergenic	-13892	NM_001331018	10311		NM_006052	ENSG00000157538	VPS26C	DCRA|DSCR3|DSCRA	VPS26 endosomal protein sorting factor C	protein-coding
231465	chr9	131307371	131307730	+	0	NA	intron (NM_032728, intron 1 of 1)	AluSx1|SINE|Alu	17827	NM_032728	84814		NM_032728	ENSG00000160539	PLPP7	C9orf67|NET39|PPAPDC3	phospholipid phosphatase 7 (inactive)	protein-coding
39265	chr11	57746801	57747000	+	0	NA	intron (NM_001145101, intron 2 of 2)	L2b|LINE|L2	4881	NM_001145101	643376		NM_001145101	ENSG00000233436	BTBD18	-	BTB domain containing 18	protein-coding
226930	chr9	79600371	79600730	+	0	NA	intron (NM_001351556, intron 4 of 18)	intron (NM_001351556, intron 4 of 18)	27373	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
15505	chr1	150472651	150473150	+	0	NA	exon (NM_001297674, exon 10 of 10)	exon (NM_001297674, exon 10 of 10)	-14519	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
5544	chr1	25860971	25861130	+	0	NA	TTS (NM_178422)	TTS (NM_178422)	-1592	NM_001287490	79000		NM_024037	ENSG00000127423	AUNIP	AIBP|C1orf135	aurora kinase A and ninein interacting protein	protein-coding
180261	chr5	1724771	1725530	+	0	NA	Intergenic	CpG	-16282	NR_036240	100422966		NR_036240	ENSG00000263746	MIR4277	-	microRNA 4277	ncRNA
186489	chr5	138211821	138212080	+	0	NA	intron (NM_004661, intron 2 of 15)	intron (NM_004661, intron 2 of 15)	1373	NM_004661	8697		NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
2754	chr1	10684401	10684800	+	0	NA	intron (NM_017766, intron 4 of 15)	MER81|DNA|hAT-Blackjack	112046	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
160720	chr3	32430521	32431430	+	0	NA	intron (NM_138410, intron 1 of 4)	L2a|LINE|L2	39122	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
189464	chr5	173056801	173058380	+	0	NA	intron (NM_001168393, intron 1 of 3)	intron (NM_001168393, intron 1 of 3)	1238	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
132899	chr2	111380671	111381330	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	-59909	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
202897	chr6	159999401	159999950	+	0	NA	intron (NM_000876, intron 2 of 47)	intron (NM_000876, intron 2 of 47)	7989	NR_047511	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
69950	chr14	99675121	99675800	+	0	NA	exon (NM_001127258, exon 9 of 9)	exon (NM_001127258, exon 9 of 9)	-8838	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
219531	chr8	75407871	75408030	+	0	NA	5' UTR (NM_001330561, exon 1 of 12)	5' UTR (NM_001330561, exon 1 of 12)	301	NM_001330561	3174		NM_004133	ENSG00000164749	HNF4G	NR2A2|NR2A3	hepatocyte nuclear factor 4 gamma	protein-coding
109030	chr18	79730751	79731750	+	0	NA	intron (NM_001318511, intron 11 of 11)	intron (NM_001318511, intron 11 of 11)	49820	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
48112	chr12	7832051	7832350	+	0	NA	intron (NM_153449, intron 4 of 11)	intron (NM_153449, intron 4 of 11)	40715	NM_001286236	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
219816	chr8	81609051	81609150	+	0	NA	intron (NR_146081, intron 7 of 7)	AluSq|SINE|Alu	22177	NR_146081	650747		NR_146081		IMPA1P1	IMPA1P	inositol monophosphatase 1 pseudogene 1	pseudo
172575	chr4	2462351	2463500	+	0	NA	TTS (NM_001193282)	TTS (NM_001193282)	-6181	NM_002938	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
174820	chr4	48138701	48140250	+	0	NA	intron (NM_003215, intron 15 of 17)	intron (NM_003215, intron 15 of 17)	-5225	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
231572	chr9	131500121	131501700	+	0	NA	TTS (NM_001384822)	TTS (NM_001384822)	-2008	NM_001374695	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
205499	chr7	17944701	17945180	+	0	NA	Intergenic	L1MC3|LINE|L1	-4432	NM_001350868	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
101768	chr17	73011101	73011300	+	0	NA	intron (NM_001352691, intron 5 of 10)	L2b|LINE|L2	81488	NM_001352691	201266		NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP-11|ZIP11	solute carrier family 39 member 11	protein-coding
96424	chr17	40179701	40180380	+	0	NA	intron (NM_016339, intron 1 of 14)	intron (NM_016339, intron 1 of 14)	2570	NM_016339	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
135497	chr2	161954001	161954600	+	0	NA	intron (NM_001178016, intron 19 of 26)	intron (NM_001178016, intron 19 of 26)	119915	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
68371	chr14	77758001	77758900	+	0	NA	intron (NM_001318844, intron 1 of 12)	MER66B|LTR|ERV1	-2318	NR_161324	283579		NM_174943	ENSG00000197734	C14orf178	-	chromosome 14 open reading frame 178	ncRNA
141852	chr20	553551	553650	+	0	NA	Intergenic	L1MC4|LINE|L1	-9810	NM_177560	1457		NM_001895	ENSG00000101266	CSNK2A1	CK2A1|CKII|Cka1|Cka2|OCNDS	casein kinase 2 alpha 1	protein-coding
213175	chr7	132436701	132436900	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	139670	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
34377	chr10	132305921	132306400	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	1062	NM_001318879	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
64015	chr14	22501901	22502330	+	0	NA	Intergenic	Intergenic	-19156	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
209387	chr7	76312751	76313130	+	0	NA	Intergenic	AluSp|SINE|Alu	10267	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
139389	chr2	222295271	222295630	+	0	NA	intron (NM_000438, intron 3 of 3)	CpG	-2697	NR_161172	151278		NM_153038	ENSG00000163081	CCDC140	-	CCDC140 long non-coding RNA	ncRNA
42849	chr11	73185121	73185700	+	0	NA	Intergenic	Intergenic	-32871	NM_002564	5029		NM_002564	ENSG00000175591	P2RY2	HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R	purinergic receptor P2Y2	protein-coding
68902	chr14	91349001	91350180	+	0	NA	intron (NM_001080414, intron 4 of 29)	intron (NM_001080414, intron 4 of 29)	68230	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
65896	chr14	55212921	55213480	+	0	NA	Intergenic	Intergenic	-21615	NM_014750	9787		NM_014750	ENSG00000126787	DLGAP5	DLG7|HURP	DLG associated protein 5	protein-coding
83830	chr16	28853521	28854330	+	0	NA	intron (NM_001308293, intron 1 of 10)	AluY|SINE|Alu	7325	NM_001308293	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
82350	chr16	15960151	15960450	+	0	NA	intron (NM_004996, intron 1 of 30)	AluJb|SINE|Alu	10684	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
190629	chr5	181204901	181205800	+	0	NA	promoter-TSS (NM_033342)	promoter-TSS (NM_033342)	-154	NM_203293	81786		NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
125253	chr2	10425321	10426000	+	0	NA	intron (NM_134421, intron 5 of 5)	MIR|SINE|MIR	21189	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
182212	chr5	56843001	56843400	+	0	NA	intron (NM_005921, intron 1 of 19)	LTR88b|LTR|Gypsy?	27651	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
139555	chr2	224923371	224924030	+	0	NA	intron (NM_001363762, intron 2 of 55)	intron (NM_001363762, intron 2 of 55)	23349	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
46190	chr11	123429951	123432650	+	0	NA	intron (NM_001367421, intron 2 of 20)	intron (NM_001367421, intron 2 of 20)	1031	NM_001354837	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
221926	chr8	129825651	129825750	+	0	NA	Intergenic	Intergenic	-39076	NM_031415	56169		NM_031415	ENSG00000147697	GSDMC	MLZE	gasdermin C	protein-coding
45971	chr11	121459151	121460230	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	7376	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
41979	chr11	67372471	67372660	+	0	NA	intron (NM_001166212, intron 1 of 2)	CpG	1033	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
40733	chr11	64819801	64820350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8781	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
215966	chr8	8701571	8702630	+	0	NA	5' UTR (NM_194284, exon 1 of 1)	5' UTR (NM_194284, exon 1 of 1)	163	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
113691	chr19	10407651	10407750	+	0	NA	Intergenic	L1PA7|LINE|L1	-4158	NM_007065	11140		NM_007065	ENSG00000105401	CDC37	P50CDC37	cell division cycle 37, HSP90 cochaperone	protein-coding
153611	chr22	27917401	27917600	+	0	NA	intron (NM_012399, intron 1 of 11)	intron (NM_012399, intron 1 of 11)	1714	NM_001284278	23760		NM_012399	ENSG00000180957	PITPNB	PI-TP-beta|PtdInsTP|VIB1B	phosphatidylinositol transfer protein beta	protein-coding
182983	chr5	71850951	71851050	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	131725	NM_004291	9607		NM_004291	ENSG00000164326	CARTPT	CART	CART prepropeptide	protein-coding
9774	chr1	53444601	53444930	+	0	NA	Intergenic	LTR13|LTR|ERVK	-4745	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
79449	chr16	717651	718480	+	0	NA	3' UTR (NM_024042, exon 4 of 4)	3' UTR (NM_024042, exon 4 of 4)	2947	NM_024042	79006		NM_024042	ENSG00000103260	METRN	C16orf23|c380A1.2	meteorin, glial cell differentiation regulator	protein-coding
45302	chr11	118148851	118149030	+	0	NA	intron (NM_174934, intron 1 of 4)	intron (NM_174934, intron 1 of 4)	-3507	NM_001142349	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
51524	chr12	52260001	52260400	+	0	NA	Intergenic	LTR19B|LTR|ERV1	-1692	NR_146088	85349		NR_146088	ENSG00000135477	KRT87P	KRT121P|KRTHBP4|psihHbD	keratin 87, pseudogene	pseudo
230574	chr9	128549371	128549530	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluSz|SINE|Alu	-3137	NM_001375318	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
46165	chr11	123080171	123080330	+	0	NA	intron (NM_024769, intron 5 of 6)	MLT1F1|LTR|ERVL-MaLR	-18114	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
11863	chr1	93041951	93043050	+	0	NA	Intergenic	MER51A|LTR|ERV1	-36735	NM_001164393	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
140854	chr2	237429451	237430300	+	0	NA	Intergenic	Intergenic	-15668	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
123994	chr19	55448651	55449050	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-5987	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
143610	chr20	31717021	31718330	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-3832	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
108676	chr18	76895901	76896300	+	0	NA	intron (NM_001306089, intron 10 of 30)	intron (NM_001306089, intron 10 of 30)	72340	NM_007345	7776		NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
104158	chr17	80394801	80395150	+	0	NA	3' UTR (NM_001256071, exon 68 of 68)	3' UTR (NM_001256071, exon 68 of 68)	-20192	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
170411	chr3	185569751	185569930	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-16455	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
166534	chr3	114809781	114810380	+	0	NA	intron (NM_015642, intron 3 of 9)	L1M4a2|LINE|L1	-50973	NM_001164345	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
208170	chr7	64671051	64671430	+	0	NA	intron (NM_016220, intron 2 of 6)	intron (NM_016220, intron 2 of 6)	5107	NM_001013746	51427		NM_016220	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
23223	chr1	227733121	227733380	+	0	NA	intron (NM_023007, intron 4 of 5)	intron (NM_023007, intron 4 of 5)	-1746	NM_001323935	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
193040	chr6	28525651	28526050	+	0	NA	promoter-TSS (NM_003996)	promoter-TSS (NM_003996)	-31	NM_001509	2880		NM_001509	ENSG00000224586	GPX5	EGLP|GPx-5|GSHPx-5|HEL-S-75p	glutathione peroxidase 5	protein-coding
59730	chr13	29847321	29848050	+	0	NA	intron (NM_007106, intron 1 of 4)	intron (NM_007106, intron 1 of 4)	2932	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
200340	chr6	133963951	133964450	+	0	NA	intron (NM_004865, intron 1 of 6)	L3b|LINE|CR1	10976	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
58887	chr13	18665451	18665650	+	0	NA	Intergenic	CpG	74549	NR_047508	100874164		NR_047508		LINC00417	-	long intergenic non-protein coding RNA 417	ncRNA
179214	chr4	173506751	173507050	+	0	NA	intron (NM_001329597, intron 1 of 3)	CpG	12244	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
65659	chr14	52414121	52414380	+	0	NA	Intergenic	Intergenic	99938	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
200875	chr6	138945201	138945480	+	0	NA	exon (NM_001128617, exon 4 of 19)	exon (NM_001128617, exon 4 of 19)	42913	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
61651	chr13	73924721	73925180	+	0	NA	intron (NM_007249, intron 3 of 7)	Tigger1|DNA|TcMar-Tigger	208979	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
45748	chr11	119168101	119169700	+	0	NA	5' UTR (NM_001282144, exon 1 of 10)	5' UTR (NM_001282144, exon 1 of 10)	175	NM_024618	79671		NM_024618	ENSG00000160703	NLRX1	CLR11.3|DLNB26|NOD26|NOD5|NOD9	NLR family member X1	protein-coding
199739	chr6	125778901	125779480	+	0	NA	Intergenic	AluY|SINE|Alu	-1925	NM_001199619	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
170597	chr3	186933201	186933400	+	0	NA	intron (NM_173216, intron 1 of 7)	LTR27|LTR|ERV1	2774	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
12554	chr1	108679901	108680100	+	0	NA	Intergenic	MER75A|DNA|PiggyBac	-12310	NM_001349768	55119		NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
194508	chr6	33284501	33284700	+	0	NA	intron (NM_005452, intron 10 of 14).5	MIR|SINE|MIR	2689	NR_106933	102466754		NR_106933	ENSG00000284517	MIR6873	hsa-mir-6873	microRNA 6873	ncRNA
223144	chr8	143514821	143515290	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	-8807	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
188446	chr5	154473471	154474480	+	0	NA	TTS (NM_004821)	TTS (NM_004821)	4252	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
5079	chr1	24688551	24689080	+	0	NA	Intergenic	Intergenic	45236	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
231776	chr9	132252401	132252940	+	0	NA	Intergenic	LTR13|LTR|ERVK	90612	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
109854	chr19	1224221	1224480	+	0	NA	intron (NM_000455, intron 8 of 9)	intron (NM_000455, intron 8 of 9)	13655	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
47835	chr12	6601401	6601600	+	0	NA	exon (NM_001363606, exon 6 of 40)	exon (NM_001363606, exon 6 of 40)	4951	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
169630	chr3	171293121	171293650	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	167020	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
184028	chr5	91359951	91360250	+	0	NA	Intergenic	AluJo|SINE|Alu	19997	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
151302	chr21	45539721	45540480	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	1746	NM_001352512	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
120788	chr19	45446201	45446600	+	0	NA	intron (NM_001369412, intron 1 of 9)	intron (NM_001369412, intron 1 of 9)	4366	NM_001369417	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
2305	chr1	9004171	9004550	+	0	NA	intron (NM_207420, intron 11 of 11)	intron (NM_207420, intron 11 of 11)	21985	NM_207420	155184		NM_207420	ENSG00000197241	SLC2A7	GLUT-7|GLUT7|hGLUT7	solute carrier family 2 member 7	protein-coding
134375	chr2	136280901	136282580	+	0	NA	Intergenic	Intergenic	-163591	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
134840	chr2	148651151	148651650	+	0	NA	intron (NM_015630, intron 1 of 13)	L2a|LINE|L2	6649	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
148548	chr20	64219121	64219400	+	0	NA	intron (NM_004535, intron 12 of 22)	intron (NM_004535, intron 12 of 22)	-36435	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
12042	chr1	98044251	98044750	+	0	NA	TTS (NR_039604)	TTS (NR_039604)	851	NR_039604	100616452		NR_039604	ENSG00000284247	MIR2682	mir-2682	microRNA 2682	ncRNA
66245	chr14	61349351	61349550	+	0	NA	intron (NM_006255, intron 1 of 13)	MIRb|SINE|MIR	28007	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
50373	chr12	47219371	47219680	+	0	NA	intron (NM_138371, intron 3 of 3)	intron (NM_138371, intron 3 of 3)	-3082	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
163344	chr3	50429901	50431250	+	0	NA	intron (NM_006030, intron 3 of 37)	L2b|LINE|L2	65212	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
92189	chr17	7832551	7832650	+	0	NA	exon (NM_020877, exon 83 of 86)	exon (NM_020877, exon 83 of 86)	-7306	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
63561	chr14	20400951	20401250	+	0	NA	exon (NM_001319035, exon 7 of 53)	exon (NM_001319035, exon 7 of 53)	12401	NM_007110	7011		NM_007110	ENSG00000129566	TEP1	TLP1|TP1|TROVE1|VAULT2|p240	telomerase associated protein 1	protein-coding
77270	chr15	81414171	81414900	+	0	NA	intron (NR_120365, intron 6 of 6)	LTR12D|LTR|ERV1	-40322	NM_001080532	342125		NM_181841	ENSG00000188869	TMC3	-	transmembrane channel like 3	protein-coding
132877	chr2	111157001	111157800	+	0	NA	intron (NM_207003, intron 4 of 4)	intron (NM_207003, intron 4 of 4)	36486	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
202879	chr6	159971671	159972100	+	0	NA	intron (NM_000876, intron 1 of 47)	AluJr|SINE|Alu	2803	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
33952	chr10	124630871	124631250	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-72968	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
60630	chr13	42355001	42356080	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-69352	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
6969	chr1	31782771	31782930	+	0	NA	Intergenic	Intergenic	-18510	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
56071	chr12	110590851	110591730	+	0	NA	Intergenic	Intergenic	-7972	NM_139283	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
80065	chr16	1981021	1981330	+	0	NA	exon (NM_001267721, exon 1 of 8)	exon (NM_001267721, exon 1 of 8)	294	NM_172168	124056		NM_144603	ENSG00000196408	NOXO1	P41NOX|P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28	NADPH oxidase organizer 1	protein-coding
50425	chr12	47410371	47410930	+	0	NA	Intergenic	Intergenic	-4358	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
72286	chr15	30962621	30962880	+	0	NA	intron (NM_017762, intron 6 of 15).2	L2c|LINE|L2	28878	NM_017762	54893		NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
68679	chr14	90330551	90330850	+	0	NA	intron (NM_017970, intron 1 of 13)	AluJo|SINE|Alu	1241	NM_017970	55051		NM_017970	ENSG00000119720	NRDE2	C14orf102	NRDE-2, necessary for RNA interference, domain containing	protein-coding
119056	chr19	39111451	39111750	+	0	NA	TTS (NM_001363687)	TTS (NM_001363687)	-14186	NM_001014831	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
83144	chr16	23252421	23252680	+	0	NA	Intergenic	AluJo|SINE|Alu	-49752	NM_000336	6338		NM_000336	ENSG00000168447	SCNN1B	BESC1|ENaCb|ENaCbeta|LIDLS1|PHA1B2|SCNEB|beta-ENaC|beta-NaCH	sodium channel epithelial 1 subunit beta	protein-coding
8903	chr1	43948901	43949550	+	0	NA	intron (NM_014652, intron 1 of 19)	intron (NM_014652, intron 1 of 19)	2275	NM_014652	9670		NM_014652	ENSG00000117408	IPO13	IMP13|KAP13|LGL2|RANBP13	importin 13	protein-coding
205477	chr7	17353971	17354330	+	0	NA	Intergenic	L1PA7|LINE|L1	-20767	NR_110015	102659288		NR_110014		LINC02888	KCCAT333	long intergenic non-protein coding RNA 2888	ncRNA
135479	chr2	161418671	161419100	+	0	NA	intron (NM_006593, intron 3 of 5)	CpG	2588	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
101592	chr17	68089121	68089700	+	0	NA	Intergenic	L3b|LINE|CR1	-12145	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
72073	chr15	28895951	28896250	+	0	NA	intron (NM_001379685, intron 2 of 15)	AluJo|SINE|Alu	10126	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
115148	chr19	14398101	14399000	+	0	NA	intron (NM_001025160, intron 8 of 18)	AluY|SINE|Alu	17106	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
44297	chr11	102324951	102325400	+	0	NA	exon (NM_001165, exon 2 of 9)	exon (NM_001165, exon 2 of 9)	7691	NM_001165	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
62277	chr13	98626351	98626830	+	0	NA	Intergenic	Kanga1c|DNA|TcMar-Tc2	49335	NR_046542	100874069		NR_046542		STK24-AS1	-	STK24 antisense RNA 1	ncRNA
80090	chr16	2004871	2005230	+	0	NA	intron (NM_178167, intron 3 of 13)	intron (NM_178167, intron 3 of 13)	4771	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
199865	chr6	127796751	127796850	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	58388	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
57481	chr12	122076821	122077430	+	0	NA	Intergenic	Intergenic	-1631	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
129336	chr2	68747121	68747500	+	0	NA	intron (NM_001364821, intron 1 of 10)	L2a|LINE|L2	11933	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
959	chr1	1764201	1764530	+	0	NA	intron (NM_001353642, intron 2 of 11)	intron (NM_001353642, intron 2 of 11)	-5723	NM_001198995	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
141919	chr20	1120671	1121080	+	0	NA	intron (NM_178578, intron 2 of 7)	intron (NM_178578, intron 2 of 7)	2273	NM_001323410	9491		NM_006814	ENSG00000125818	PSMF1	PI31	proteasome inhibitor subunit 1	protein-coding
21589	chr1	206503851	206504750	+	0	NA	Intergenic	Intergenic	-3231	NM_182664	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
25581	chr10	8035371	8036400	+	0	NA	Intergenic	CpG	16606	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
125889	chr2	24720321	24720580	+	0	NA	intron (NM_147233, intron 12 of 20)	intron (NM_147233, intron 12 of 20)	-72665	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
215998	chr8	8891621	8891880	+	0	NA	exon (NM_004225, exon 1 of 3)	exon (NM_004225, exon 1 of 3)	1880	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
49370	chr12	22393221	22393980	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-58886	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
13466	chr1	114568151	114568650	+	0	NA	intron (NM_005872, intron 6 of 6)	AluSq2|SINE|Alu	13215	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
199601	chr6	119267521	119267930	+	0	NA	intron (NM_005907, intron 5 of 12)	L1ME3B|LINE|L1	82036	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
155070	chr22	37541671	37542280	+	0	NA	Intergenic	Intergenic	-18505	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
63292	chr13	113977401	113978050	+	0	NA	TTS (NM_007368)	TTS (NM_007368)	-3649	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
212450	chr7	128411701	128412200	+	0	NA	Intergenic	AluSx|SINE|Alu	-1968	NM_183243	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
84965	chr16	31414721	31415380	+	0	NA	intron (NM_001318185, intron 18 of 29)	intron (NM_001318185, intron 18 of 29)	13310	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
122487	chr19	49562721	49563500	+	0	NA	intron (NM_001270960, intron 1 of 8)	Charlie2b|DNA|hAT-Charlie	17446	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
48951	chr12	12786601	12787600	+	0	NA	exon (NM_030817, exon 2 of 2)	exon (NM_030817, exon 2 of 2)	1441	NM_030817	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
199951	chr6	127918401	127919300	+	0	NA	promoter-TSS (NM_001164687).2	promoter-TSS (NM_001164687).2	-219	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
148989	chr21	14120201	14120400	+	0	NA	intron (NM_001303001, intron 7 of 7)	HERV1_I-int|LTR|ERV1	86649	NM_198996	149998		NM_145317	ENSG00000188992	LIPI	CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta	lipase I	protein-coding
145071	chr20	38596651	38596750	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-5109	NM_001164431	343578		NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
84990	chr16	31463551	31463850	+	0	NA	intron (NM_024742, intron 3 of 3)	FLAM_C|SINE|Alu	4199	NM_001105247	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
123129	chr19	51986101	51987480	+	0	NA	promoter-TSS (NM_021632)	promoter-TSS (NM_021632)	50	NM_021632	59348		NM_021632	ENSG00000256683	ZNF350	ZBRK1|ZFQR	zinc finger protein 350	protein-coding
97513	chr17	43939951	43940050	+	0	NA	TTS (NM_001319209)	TTS (NM_001319209)	1739	NR_136406	107546764		NR_136406	ENSG00000261514	LINC01976	-	long intergenic non-protein coding RNA 1976	ncRNA
34867	chr11	352871	353500	+	0	NA	Intergenic	Intergenic	-16314	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
33617	chr10	119595351	119596100	+	0	NA	intron (NR_136663, intron 1 of 11)	intron (NR_136663, intron 1 of 11)	1304	NM_001323965	7073		NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
220097	chr8	94421271	94421430	+	0	NA	intron (NM_012415, intron 3 of 14)	L2|LINE|L2	15594	NM_001205263	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
27504	chr10	32283151	32283680	+	0	NA	TTS (NR_168509)	TTS (NR_168509)	63743	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
43689	chr11	85827601	85828550	+	0	NA	Intergenic	Intergenic	-16916	NM_001289608	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
23706	chr1	231629201	231629500	+	0	NA	intron (NM_001164556, intron 1 of 4)	intron (NM_001164556, intron 1 of 4)	2535	NM_001164555	27185		NM_018662	ENSG00000162946	DISC1	C1orf136|SCZD9	DISC1 scaffold protein	protein-coding
175315	chr4	68317971	68318430	+	0	NA	intron (NM_001031732, intron 15 of 16)	AluSx|SINE|Alu	31890	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
68861	chr14	91306871	91307030	+	0	NA	intron (NM_001080414, intron 18 of 29)	intron (NM_001080414, intron 18 of 29)	-53070	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
103465	chr17	78332701	78333450	+	0	NA	Intergenic	Plat_L3|LINE|CR1	26592	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
166086	chr3	109081971	109082230	+	0	NA	intron (NM_014429, intron 8 of 27)	L1MA4|LINE|L1	-19356	NR_144461	100506506		NR_144461	ENSG00000239314	MORC1-AS1	-	MORC1 antisense RNA 1	ncRNA
121038	chr19	45815101	45815930	+	0	NA	promoter-TSS (NM_030785)	promoter-TSS (NM_030785)	-207	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
111358	chr19	3677001	3677500	+	0	NA	intron (NM_001300849, intron 1 of 16)	L1M5|LINE|L1	23218	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
69452	chr14	94486271	94486500	+	0	NA	TTS (NM_001382267)	TTS (NM_001382267)	-10188	NM_001284275	327657		NM_175739	ENSG00000170054	SERPINA9	GCET1|SERPINA11|SERPINA11b	serpin family A member 9	protein-coding
231749	chr9	132147371	132147930	+	0	NA	Intergenic	Intergenic	-14408	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
59121	chr13	21343521	21343850	+	0	NA	intron (NR_103841, intron 1 of 2)	intron (NR_103841, intron 1 of 2)	1101	NR_103840	100652865		NR_103840	ENSG00000224429	LINC00539	LINC00422	long intergenic non-protein coding RNA 539	ncRNA
177498	chr4	114396821	114397080	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-201452	NM_001322112	7368		NM_003360	ENSG00000174607	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding
101747	chr17	70169071	70169600	+	0	NA	promoter-TSS (NR_036534)	promoter-TSS (NR_036534)	67	NR_036534	400617		NR_036534	ENSG00000267365	KCNJ2-AS1	-	KCNJ2 antisense RNA 1	ncRNA
93348	chr17	18222601	18223380	+	0	NA	Intergenic	AluSp|SINE|Alu	-2645	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
129491	chr2	69617621	69617880	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	25988	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
68168	chr14	75978271	75978730	+	0	NA	intron (NM_001329939, intron 2 of 7)	intron (NM_001329939, intron 2 of 7)	3495	NM_003239	7043		NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
69234	chr14	92793401	92794980	+	0	NA	promoter-TSS (NM_005113)	promoter-TSS (NM_005113)	-115	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
7272	chr1	32370251	32370350	+	0	NA	intron (NR_125352, intron 9 of 11)	L2a|LINE|L2	7761	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
126563	chr2	28627001	28627200	+	0	NA	intron (NM_153021, intron 51 of 57)	intron (NM_153021, intron 51 of 57)	60743	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
188479	chr5	154765351	154765650	+	0	NA	intron (NM_001367719, intron 1 of 18)	AluJb|SINE|Alu	8346	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
157983	chr22	49836451	49836950	+	0	NA	Intergenic	L2|LINE|L2	-8827	NM_001304808	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
129760	chr2	71021101	71021300	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-2875	NR_002185	79315		NR_002185	ENSG00000290930	OR7E91P	-	olfactory receptor family 7 subfamily E member 91 pseudogene	pseudo
68400	chr14	80958001	80958400	+	0	NA	intron (NM_001142626, intron 1 of 8)	MIR|SINE|MIR	2579	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
26155	chr10	14173471	14173630	+	0	NA	intron (NR_134578, intron 2 of 3)	intron (NR_134578, intron 2 of 3)	99266	NR_120638	101928453		NR_120638		LOC101928453	-	uncharacterized LOC101928453	ncRNA
59828	chr13	30430151	30430650	+	0	NA	TTS (NM_001355247)	TTS (NM_001355247)	7907	NM_001355247	171222		NM_001355247	ENSG00000236444	UBE2L5	UBCH7N2|UBE2L5P	ubiquitin conjugating enzyme E2 L5	protein-coding
157212	chr22	43164601	43164800	+	0	NA	Intergenic	Intergenic	12765	NM_001256530	706		NM_000714	ENSG00000100300	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|TSPO1|mDRC|pk18	translocator protein	protein-coding
117292	chr19	19485951	19486050	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	29548	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
212044	chr7	114959951	114960450	+	0	NA	intron (NM_199072, intron 3 of 4)	MIRc|SINE|MIR	38046	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
179800	chr5	394251	394800	+	0	NA	intron (NR_165159, intron 6 of 13)	intron (NR_165159, intron 6 of 13)	48635	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
146997	chr20	53561971	53562680	+	0	NA	intron (NR_110051, intron 2 of 5)	AluJr|SINE|Alu	9555	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
112323	chr19	5906271	5906680	+	0	NA	intron (NM_001017921, intron 1 of 1)	L2b|LINE|L2	1603	NM_001017921	400673		NM_001017921	ENSG00000187650	VMAC	-	vimentin type intermediate filament associated coiled-coil protein	protein-coding
165418	chr3	98028951	98029450	+	0	NA	intron (NR_047685, intron 2 of 9)	intron (NR_047685, intron 2 of 9)	6104	NM_001105580	200959		NM_001105580	ENSG00000183185	GABRR3	-	gamma-aminobutyric acid type A receptor subunit rho3	protein-coding
93702	chr17	19386951	19387750	+	0	NA	promoter-TSS (NM_001198695)	promoter-TSS (NM_001198695)	-160	NM_002404	4239		NM_002404	ENSG00000166482	MFAP4	-	microfibril associated protein 4	protein-coding
108649	chr18	76620171	76620530	+	0	NA	non-coding (NR_120419, exon 1 of 2)	non-coding (NR_120419, exon 1 of 2)	573	NR_120419	400660		NR_120419	ENSG00000266256	LINC00683	-	long intergenic non-protein coding RNA 683	ncRNA
238647	chrX	153983051	153983150	+	0	NA	TTS (NM_003492)	TTS (NM_003492)	-1924	NR_036175	100422877		NR_036175	ENSG00000283694	MIR3202-2	mir-3202-2	microRNA 3202-2	ncRNA
75642	chr15	67242551	67243030	+	0	NA	intron (NM_001271885, intron 1 of 9)	intron (NM_001271885, intron 1 of 9)	11871	NM_024666	79719		NM_024666	ENSG00000103591	AAGAB	KPPP1|PPKP1|PPKP1A|p34	alpha and gamma adaptin binding protein	protein-coding
10216	chr1	62439071	62439530	+	0	NA	intron (NM_003368, intron 1 of 8)	AluSg|SINE|Alu	2251	NM_003368	7398		NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
5688	chr1	26360001	26361050	+	0	NA	Intergenic	CpG	-6395	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
236512	chrX	72020671	72021250	+	0	NA	intron (NM_001013627, intron 1 of 7)	MER5A1|DNA|hAT-Charlie	-23449	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
167395	chr3	128908171	128908530	+	0	NA	intron (NM_014049, intron 13 of 17)	intron (NM_014049, intron 13 of 17)	28730	NM_014049	28976		NM_014049	ENSG00000177646	ACAD9	MC1DN20|NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
112247	chr19	5778321	5779100	+	0	NA	TTS (NM_152784)	TTS (NM_152784)	6036	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
103572	chr17	78687271	78688300	+	0	NA	intron (NM_017456, intron 10 of 12)	Charlie3|DNA|hAT-Charlie	29247	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
79813	chr16	1413121	1414100	+	0	NA	intron (NM_001372107, intron 2 of 14)	intron (NM_001372107, intron 2 of 14)	1094	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
110025	chr19	1450951	1451830	+	0	NA	intron (NM_005883, intron 1 of 14)	intron (NM_005883, intron 1 of 14)	1269	NM_005883	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
132371	chr2	105763771	105763930	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	18787	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
77750	chr15	85752251	85753080	+	0	NA	Intergenic	Intergenic	6060	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
233768	chrX	1414501	1415780	+	0	NA	non-coding (NR_026711, exon 6 of 6)	non-coding (NR_026711, exon 6 of 6)	14609	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
120294	chr19	43465471	43466230	+	0	NA	promoter-TSS (NM_014400)	promoter-TSS (NM_014400)	-242	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
165685	chr3	101878321	101878580	+	0	NA	Intergenic	AluSz|SINE|Alu	28936	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
18653	chr1	166974821	166976380	+	0	NA	promoter-TSS (NM_001286378)	promoter-TSS (NM_001286378)	18	NM_001286378	84944		NM_032858	ENSG00000143194	MAEL	CT128|SPATA35	maelstrom spermatogenic transposon silencer	protein-coding
62757	chr13	108095021	108095280	+	0	NA	Intergenic	L1M7|LINE|L1	119632	NM_002312	3981		NM_002312	ENSG00000174405	LIG4	LIG4S	DNA ligase 4	protein-coding
161403	chr3	41220151	41220480	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	20810	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
158832	chr3	9786851	9787300	+	0	NA	non-coding (NR_103488, exon 4 of 7)	non-coding (NR_103488, exon 4 of 7)	-5420	NM_001024959	10093		NM_005718	ENSG00000241553	ARPC4	ARC20|DEVLO|P20-ARC	actin related protein 2/3 complex subunit 4	protein-coding
92387	chr17	8283401	8283630	+	0	NA	Intergenic	Intergenic	-5155	NM_001177802	29098		NM_016492	ENSG00000108961	RANGRF	HSPC165|HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
114543	chr19	12869621	12869880	+	0	NA	intron (NM_014975, intron 22 of 25)	MIR|SINE|MIR	11699	NM_001375	1777		NM_001375	ENSG00000105612	DNASE2	AIPCS|DNASE2A|DNL|DNL2	deoxyribonuclease 2, lysosomal	protein-coding
48248	chr12	8396201	8397350	+	0	NA	Intergenic	CpG	-6023	NR_024420	389634		NM_001012988	ENSG00000226091	LINC00937	-	long intergenic non-protein coding RNA 937	ncRNA
4306	chr1	20212471	20213230	+	0	NA	Intergenic	MIR3|SINE|MIR	-26332	NM_001316722	391013		NM_001105572	ENSG00000187980	PLA2G2C	UBXN10-AS1	phospholipase A2 group IIC	protein-coding
129517	chr2	69650071	69651030	+	0	NA	intron (NM_001320698, intron 1 of 14)	AluJr|SINE|Alu	6742	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
55404	chr12	104471601	104472180	+	0	NA	intron (NM_018413, intron 1 of 2)	MER33|DNA|hAT-Charlie	14942	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
54872	chr12	95572001	95572200	+	0	NA	Intergenic	AluJr|SINE|Alu	-20624	NM_032147	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
95490	chr17	36245551	36245850	+	0	NA	Intergenic	Intergenic	18813	NM_001291465	101060389		NM_001123390	ENSG00000274419	TBC1D3D	PRC17|TBC1D3|TBC1D3A|TBC1D3H	TBC1 domain family member 3D	protein-coding
15673	chr1	150931321	150932480	+	0	NA	intron (NM_012432, intron 3 of 21)	L1M4|LINE|L1	5537	NM_012432	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
1219	chr1	2267751	2268950	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	40031	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
227195	chr9	87971871	87972030	+	0	NA	intron (NM_012119, intron 2 of 6)	AluJb|SINE|Alu	2583	NM_001170639	23552		NM_012119	ENSG00000156345	CDK20	CCRK|CDCH|P42|PNQALRE	cyclin dependent kinase 20	protein-coding
132908	chr2	111411751	111412580	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	82996	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
195103	chr6	35608221	35608880	+	0	NA	intron (NM_001145775, intron 6 of 11)	AluJo|SINE|Alu	56239	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
233796	chrX	1448051	1448630	+	0	NA	intron (NM_001173473, intron 1 of 12).2	intron (NM_001173473, intron 1 of 12).2	4569	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
13280	chr1	112898451	112898550	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	16450	NR_162120	113218506		NR_162120		MIR11399	-	microRNA 11399	ncRNA
215612	chr7	159176571	159176730	+	0	NA	Intergenic	LTR57|LTR|ERVL	-31693	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
198188	chr6	96836251	96836350	+	0	NA	intron (NM_001143957, intron 1 of 2)	intron (NM_001143957, intron 1 of 2)	1177	NM_001143957	81491		NM_030784	ENSG00000112218	GPR63	PSP24(beta)|PSP24B	G protein-coupled receptor 63	protein-coding
87218	chr16	69494971	69495150	+	0	NA	Intergenic	MIR|SINE|MIR	70441	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
112029	chr19	5077221	5077480	+	0	NA	intron (NM_001370093, intron 7 of 11)	intron (NM_001370093, intron 7 of 11)	108237	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
218258	chr8	42176151	42176450	+	0	NA	intron (NM_033011, intron 12 of 12)	MER6|DNA|TcMar-Tigger	23237	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
95465	chr17	36187671	36187830	+	0	NA	Intergenic	Intergenic	8556	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
52548	chr12	56137701	56138250	+	0	NA	intron (NM_015292, intron 19 of 30)	intron (NM_015292, intron 19 of 30)	9708	NM_015292	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
176101	chr4	83006871	83007030	+	0	NA	intron (NM_001115007, intron 1 of 12)	AluSx1|SINE|Alu	3873	NM_194282	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
114270	chr19	11576621	11577080	+	0	NA	intron (NM_001111034, intron 3 of 5)	intron (NM_001111034, intron 3 of 5)	795	NM_001611	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
208723	chr7	73358951	73359050	+	0	NA	TTS (NM_001135211)	TTS (NM_001135211)	30839	NM_001135211	8468		NM_003602	ENSG00000077800	FKBP6	FKBP36|SPGF77	FKBP prolyl isomerase family member 6 (inactive)	protein-coding
132658	chr2	108741201	108742100	+	0	NA	intron (NM_006267, intron 7 of 28)	AluY|SINE|Alu	22168	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
20540	chr1	198697451	198697750	+	0	NA	intron (NM_002838, intron 4 of 32)	intron (NM_002838, intron 4 of 32)	58560	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
191118	chr6	4028501	4029450	+	0	NA	intron (NR_146785, intron 1 of 20)	intron (NR_146785, intron 1 of 20)	7675	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
131724	chr2	98027371	98027530	+	0	NA	Intergenic	Intergenic	-31502	NM_015348	23505		NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
72460	chr15	32387801	32388530	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	-5388	NR_135833	101928042		NR_135833		ARHGAP11A-DT	-	ARHGAP11A divergent transcript	ncRNA
844	chr1	1599471	1600800	+	0	NA	promoter-TSS (NM_001242659)	promoter-TSS (NM_001242659)	0	NM_001242659	643988		NM_001242659	ENSG00000228594	FNDC10	C1orf233	fibronectin type III domain containing 10	protein-coding
164842	chr3	71034551	71034850	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	30224	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
32033	chr10	101026521	101027330	+	0	NA	intron (NM_024895, intron 2 of 9)	intron (NM_024895, intron 2 of 9)	4204	NM_001195263	79955		NM_024895	ENSG00000186862	PDZD7	DFNB57|PDZK7	PDZ domain containing 7	protein-coding
56803	chr12	120209701	120210250	+	0	NA	TTS (NM_001243756)	TTS (NM_001243756)	8684	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
72108	chr15	28940301	28940750	+	0	NA	intron (NM_001353793, intron 1 of 12).2	AluY|SINE|Alu	6521	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
94125	chr17	28228571	28229250	+	0	NA	TTS (NR_003064)	TTS (NR_003064)	2347	NR_003064	23615		NM_021093	ENSG00000290671	PYY2	-	peptide YY 2 (pseudogene)	pseudo
106328	chr18	12947221	12949430	+	0	NA	intron (NM_031216, intron 1 of 8)	CpG	314	NM_001013437	81929		NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
212922	chr7	130915821	130917030	+	0	NA	intron (NR_109780, intron 3 of 3)	intron (NR_109780, intron 3 of 3)	2961	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
53587	chr12	67827751	67828280	+	0	NA	Intergenic	Intergenic	-98540	NR_110063	101927901		NR_110063	ENSG00000255970	LINC02421	-	long intergenic non-protein coding RNA 2421	ncRNA
177466	chr4	113726801	113727200	+	0	NA	intron (NM_001321585, intron 2 of 19)	intron (NM_001321585, intron 2 of 19)	34738	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
135446	chr2	161221921	161222480	+	0	NA	intron (NM_004180, intron 4 of 7)	intron (NM_004180, intron 4 of 7)	-22539	NR_110164	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
117127	chr19	19261151	19261930	+	0	NA	exon (NM_023002, exon 2 of 5)	exon (NM_023002, exon 2 of 5)	1264	NM_023002	404037		NM_023002	ENSG00000187664	HAPLN4	BRAL2	hyaluronan and proteoglycan link protein 4	protein-coding
139632	chr2	225889551	225889650	+	0	NA	Intergenic	Intergenic	-253194	NR_046102	646736		NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
31005	chr10	88490521	88490780	+	0	NA	intron (NM_018363, intron 4 of 6)	intron (NM_018363, intron 4 of 6)	92668	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
121974	chr19	48490801	48492000	+	0	NA	intron (NM_001080434, intron 14 of 15)	CpG-14844	21789	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
193454	chr6	30500171	30500330	+	0	NA	Intergenic	AluYh3|SINE|Alu	10741	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
174419	chr4	39451451	39451900	+	0	NA	TTS (NM_175737)	TTS (NM_175737)	7247	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
142473	chr20	4170621	4170880	+	0	NA	intron (NM_175840, intron 1 of 7)	intron (NM_175840, intron 1 of 7)	21922	NM_175839	54498		NM_019025	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
18334	chr1	161194921	161196530	+	0	NA	intron (NM_005099, intron 3 of 8)	intron (NM_005099, intron 3 of 8)	-1692	NM_001377298	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
170742	chr3	188309471	188310050	+	0	NA	intron (NR_164692, intron 2 of 9)	intron (NR_164692, intron 2 of 9)	96864	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
72801	chr15	40054071	40055280	+	0	NA	intron (NR_040060, intron 2 of 2)	intron (NR_040060, intron 2 of 2)	15364	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
131623	chr2	96962001	96963430	+	0	NA	intron (NM_001122646, intron 5 of 16)	intron (NM_001122646, intron 5 of 16)	23865	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
72495	chr15	33021871	33022030	+	0	NA	intron (NM_001277313, intron 6 of 20)	intron (NM_001277313, intron 6 of 20)	46224	NM_001103184	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
224893	chr9	32431971	32432230	+	0	NA	intron (NM_001362840, intron 16 of 21)	intron (NM_001362840, intron 16 of 21)	47457	NM_001362840	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
208624	chr7	72970271	72970430	+	0	NA	promoter-TSS (NM_198853)	promoter-TSS (NM_198853)	668	NR_104007	100101148		NR_104007		FKBP6P1	-	FKBP6 pseudogene 1	pseudo
28961	chr10	63239371	63239600	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSx|SINE|Alu	29738	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
207432	chr7	44505751	44505850	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-15142	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
67467	chr14	70885271	70885780	+	0	NA	Intergenic	Intergenic	-21934	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
196236	chr6	42876951	42877450	+	0	NA	Intergenic	Intergenic	-2416	NR_134563	285855		NM_198486	ENSG00000146223	RPL7L1	dJ475N16.4	ribosomal protein L7 like 1	protein-coding
202846	chr6	159760401	159760600	+	0	NA	non-coding (NR_037166, exon 2 of 2)	non-coding (NR_037166, exon 2 of 2)	-1545	NM_005891	39		NM_005891	ENSG00000120437	ACAT2	-	acetyl-CoA acetyltransferase 2	protein-coding
105553	chr17	83204301	83204880	+	0	NA	Intergenic	Intergenic	-22307	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
80320	chr16	2424451	2424900	+	0	NA	non-coding (NR_003574, exon 15 of 17)	non-coding (NR_003574, exon 15 of 17)	-4772	NM_001761	899		NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1|FTDALS5	cyclin F	protein-coding
127945	chr2	46540901	46541100	+	0	NA	intron (NM_001371283, intron 1 of 3)	MIR3|SINE|MIR	-1490	NM_012249	23433		NM_012249	ENSG00000119729	RHOQ	ARHQ|HEL-S-42|RASL7A|TC10|TC10A	ras homolog family member Q	protein-coding
130526	chr2	85615861	85617250	+	0	NA	intron (NM_006590, intron 1 of 12)	intron (NM_006590, intron 1 of 12)	369	NM_001256725	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
76066	chr15	72372501	72372700	+	0	NA	intron (NM_001318825, intron 1 of 13)	intron (NM_001318825, intron 1 of 13)	3414	NR_134869	3073		NM_000520	ENSG00000213614	HEXA	TSD	hexosaminidase subunit alpha	protein-coding
111671	chr19	4255401	4255600	+	0	NA	intron (NM_018074, intron 4 of 7)	AluSg7|SINE|Alu	8420	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
37230	chr11	14497651	14498150	+	0	NA	intron (NM_001144061, intron 2 of 21)	L1MA2|LINE|L1	1911	NM_001144061	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
226637	chr9	74277221	74277800	+	0	NA	Intergenic	Intergenic	-94021	NR_121182	101927358		NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
24931	chr10	1142751	1142850	+	0	NA	Intergenic	L1MC1|LINE|L1	-16968	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
111727	chr19	4346271	4346600	+	0	NA	intron (NM_032868, intron 3 of 11)	AluJb|SINE|Alu	2873	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
120439	chr19	44211951	44212900	+	0	NA	promoter-TSS (NM_182490)	promoter-TSS (NM_182490)	-103	NM_001289172	7770		NM_182490	ENSG00000131115	ZNF227	-	zinc finger protein 227	protein-coding
149045	chr21	15051971	15052330	+	0	NA	intron (NM_003489, intron 1 of 3)	intron (NM_003489, intron 1 of 3)	12850	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
56263	chr12	112010251	112010650	+	0	NA	intron (NM_138341, intron 1 of 9)	MER52C|LTR|ERV1	2715	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
167672	chr3	130002451	130003550	+	0	NA	Intergenic	CpG	28280	NM_007117	7200		NM_007117	ENSG00000170893	TRH	Pro-TRH|TRF	thyrotropin releasing hormone	protein-coding
199615	chr6	119340121	119340580	+	0	NA	intron (NM_005907, intron 2 of 12)	intron (NM_005907, intron 2 of 12)	9411	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
125767	chr2	23436371	23436530	+	0	NA	intron (NM_052920, intron 1 of 13)	intron (NM_052920, intron 1 of 13)	51271	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
94624	chr17	29901471	29901830	+	0	NA	intron (NM_001282129, intron 1 of 15)	intron (NM_001282129, intron 1 of 15)	-28253	NM_001145053	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
57466	chr12	122014101	122014300	+	0	NA	Intergenic	Intergenic	-7684	NM_020993	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
87026	chr16	68268471	68268630	+	0	NA	intron (NM_003983, intron 2 of 10)	intron (NM_003983, intron 2 of 10)	4024	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
37431	chr11	17385521	17385780	+	0	NA	3' UTR (NM_001166290, exon 2 of 2)	3' UTR (NM_001166290, exon 2 of 2)	3009	NM_000525	3767		NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|PNDM2|TNDM3	potassium inwardly rectifying channel subfamily J member 11	protein-coding
175807	chr4	77820001	77821430	+	0	NA	promoter-TSS (NM_001365006)	promoter-TSS (NM_001365006)	-446	NM_001365006	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
43876	chr11	88336171	88336940	+	0	NA	intron (NM_148170, intron 1 of 3)	AluSc8|SINE|Alu	1181	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
73577	chr15	44478351	44479130	+	0	NA	intron (NM_016396, intron 2 of 12)	AluSx1|SINE|Alu	51111	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
202024	chr6	152973751	152974650	+	0	NA	intron (NM_012177, intron 2 of 4)	AluSq2|SINE|Alu	8841	NM_012177	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
199488	chr6	118649371	118649850	+	0	NA	intron (NM_001178035, intron 2 of 13)	intron (NM_001178035, intron 2 of 13)	1981	NM_206921	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
19972	chr1	184966901	184967600	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	7258	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
72261	chr15	30622501	30622900	+	0	NA	intron (NR_157594, intron 1 of 4)	AluSx|SINE|Alu	3078	NR_157596	102725021		NR_157593		ARHGAP11B-DT	-	ARHGAP11B divergent transcript	ncRNA
97354	chr17	43294521	43295250	+	0	NA	Intergenic	FRAM|SINE|Alu	1730	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
172409	chr4	1796221	1797200	+	0	NA	intron (NM_022965, intron 2 of 15)	intron (NM_022965, intron 2 of 15)	3398	NM_001163213	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
14364	chr1	144075951	144076700	+	0	NA	Intergenic	Intergenic	-102806	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
67784	chr14	73752351	73752860	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-6142	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
63586	chr14	20474321	20474700	+	0	NA	exon (NM_000270, exon 3 of 6)	exon (NM_000270, exon 3 of 6)	5104	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
95562	chr17	36932451	36932550	+	0	NA	non-coding (NR_135668, exon 2 of 2)	non-coding (NR_135668, exon 2 of 2)	4161	NR_135670	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
19301	chr1	172933801	172934200	+	0	NA	Intergenic	Intergenic	116941	NM_005092	8995		NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	TNF superfamily member 18	protein-coding
102227	chr17	75237851	75237950	+	0	NA	3' UTR (NM_014001, exon 16 of 16)	3' UTR (NM_014001, exon 16 of 16)	23706	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
100045	chr17	58081321	58081850	+	0	NA	non-coding (NR_110809, exon 2 of 3)	non-coding (NR_110809, exon 2 of 3)	1619	NR_110809	101927666		NR_110809	ENSG00000266290	DYNLL2-DT	-	DYNLL2 divergent transcript	ncRNA
232229	chr9	134379101	134379300	+	0	NA	promoter-TSS (NR_039816)	promoter-TSS (NR_039816)	-95	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
20031	chr1	185313321	185313580	+	0	NA	intron (NM_006469, intron 1 of 14)	intron (NM_006469, intron 1 of 14)	3793	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
8645	chr1	41754171	41754730	+	0	NA	intron (NM_024503, intron 1 of 8)	L2a|LINE|L2	164472	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
124396	chr19	58399901	58400430	+	0	NA	promoter-TSS (NR_149054)	promoter-TSS (NR_149054)	-38	NR_149054	110806301		NR_149054	ENSG00000268307	LINC02560	-	long intergenic non-protein coding RNA 2560	ncRNA
118629	chr19	37219571	37219800	+	0	NA	5' UTR (NM_001345949, exon 3 of 8)	5' UTR (NM_001345949, exon 3 of 8)	1405	NM_001345949	163087		NM_152604	ENSG00000188283	ZNF383	HSD17|Zfp383	zinc finger protein 383	protein-coding
74882	chr15	63586671	63586830	+	0	NA	TTS (NR_034080)	TTS (NR_034080)	-10637	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
187259	chr5	141491501	141491700	+	0	NA	exon (NM_018929, exon 1 of 4)	exon (NM_018929, exon 1 of 4)	2359	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
158936	chr3	10141171	10143480	+	0	NA	intron (NM_198156, intron 1 of 1)	MIRc|SINE|MIR	547	NM_198156	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
125510	chr2	12719851	12719950	+	0	NA	intron (NM_021643, intron 1 of 2)	intron (NM_021643, intron 1 of 2)	2964	NR_027303	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
221795	chr8	127972871	127973230	+	0	NA	intron (NR_003367, intron 3 of 8)	AluJr4|SINE|Alu	12417	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
102343	chr17	75498121	75498680	+	0	NA	promoter-TSS (NR_106843)	promoter-TSS (NR_106843)	-148	NR_106843	102466911		NR_106843	ENSG00000284595	MIR6785	hsa-mir-6785	microRNA 6785	ncRNA
159226	chr3	12905951	12906530	+	0	NA	intron (NM_014869, intron 12 of 13)	intron (NM_014869, intron 12 of 13)	-21029	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
26333	chr10	15167451	15169500	+	0	NA	intron (NM_004808, intron 1 of 11)	CpG	218	NM_004808	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
197718	chr6	86731851	86731950	+	0	NA	Intergenic	L1PA3|LINE|L1	-205628	NM_000865	3354		NM_000865	ENSG00000168830	HTR1E	5-HT1E	5-hydroxytryptamine receptor 1E	protein-coding
220108	chr8	94502771	94503150	+	0	NA	intron (NM_015496, intron 16 of 23)	L1MC4a|LINE|L1	-27845	NM_012415	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
113538	chr19	10152051	10152550	+	0	NA	intron (NM_001318730, intron 21 of 39)	intron (NM_001318730, intron 21 of 39)	-32401	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
236931	chrX	97563551	97564230	+	0	NA	intron (NR_125391, intron 1 of 2)	CR1_Mam|LINE|CR1	645	NR_125391	10824		NR_125391	ENSG00000236256	DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
35392	chr11	1345821	1346780	+	0	NA	Intergenic	Intergenic	36592	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
137124	chr2	191018251	191019080	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-2861	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
146432	chr20	49617151	49617700	+	0	NA	Intergenic	Intergenic	-49288	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
104523	chr17	81242571	81242730	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	2736	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
91299	chr17	4207001	4207230	+	0	NA	intron (NM_001330063, intron 6 of 24)	MLT1E2|LTR|ERVL-MaLR	56732	NM_001257999	51479		NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
95291	chr17	35527771	35528230	+	0	NA	intron (NM_001363830, intron 1 of 4)	L1PA7|LINE|L1	9861	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
160971	chr3	37162171	37162330	+	0	NA	intron (NM_001348298, intron 2 of 21)	HAL1|LINE|L1	12332	NM_006309	9209		NM_006309	ENSG00000093167	LRRFIP2	HUFI-2	LRR binding FLII interacting protein 2	protein-coding
25566	chr10	7667551	7668000	+	0	NA	promoter-TSS (NM_001001851)	promoter-TSS (NM_001001851)	-777	NM_001001851	80760		NM_030569	ENSG00000123243	ITIH5	ITI-HC5|PP14776	inter-alpha-trypsin inhibitor heavy chain 5	protein-coding
71196	chr14	105063101	105063700	+	0	NA	intron (NM_001278694, intron 1 of 4)	AluSq2|SINE|Alu	2030	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
36468	chr11	6185671	6185850	+	0	NA	Intergenic	L1PA2|LINE|L1	-13464	NM_001005178	120787		NM_001005178	ENSG00000175485	OR52W1	OR11-71|OR52W1P	olfactory receptor family 52 subfamily W member 1	protein-coding
234070	chrX	8466821	8467230	+	0	NA	TTS (NM_001001888)	TTS (NM_001001888)	2195	NM_001001888	425054		NM_001001888	ENSG00000205642	VCX3B	VCX-C|VCXC	variable charge X-linked 3B	protein-coding
72592	chr15	35019171	35019530	+	0	NA	Intergenic	Intergenic	-31063	NM_014106	54989		NM_014106	ENSG00000198146	ZNF770	PRO1914	zinc finger protein 770	protein-coding
13481	chr1	114669471	114670770	+	0	NA	promoter-TSS (NM_198459)	promoter-TSS (NM_198459)	-71	NM_001256404	163259		NM_198459	ENSG00000175984	DENND2C	dJ1156J9.1	DENN domain containing 2C	protein-coding
138058	chr2	201630771	201630930	+	0	NA	intron (NM_152388, intron 6 of 11)	MIR3|SINE|MIR	-11672	NM_001168216	151254		NM_152525	ENSG00000155754	C2CD6	ALS2CR11|SPGF68	C2 calcium dependent domain containing 6	protein-coding
134918	chr2	151189071	151189350	+	0	NA	Intergenic	Intergenic	72653	NM_198557	375287		NM_198557	ENSG00000184898	RBM43	C2orf38	RNA binding motif protein 43	protein-coding
36100	chr11	3046201	3046600	+	0	NA	intron (NM_139273, intron 1 of 21)	intron (NM_139273, intron 1 of 21)	-5416	NM_001378140	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
4064	chr1	19062801	19063200	+	0	NA	Intergenic	Intergenic	-106324	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
143860	chr20	32541101	32541300	+	0	NA	intron (NM_001256798, intron 1 of 10)	L2c|LINE|L2	31241	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
124368	chr19	58359671	58360030	+	0	NA	intron (NM_198458, intron 1 of 2)	AluSg7|SINE|Alu	-2776	NR_136527	105372483		NR_136527		ZNF497-AS1	-	ZNF497 antisense RNA 1	ncRNA
230225	chr9	127867351	127867650	+	0	NA	3' UTR (NM_000476, exon 7 of 7)	3' UTR (NM_000476, exon 7 of 7)	1995	NR_039819	100616429		NR_039819	ENSG00000263979	MIR4672	-	microRNA 4672	ncRNA
232047	chr9	133456371	133456930	+	0	NA	exon (NM_139027, exon 27 of 29).2	exon (NM_139027, exon 27 of 29).2	-3315	NM_001242370	11094		NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
12313	chr1	100931471	100931630	+	0	NA	intron (NM_133496, intron 8 of 10)	intron (NM_133496, intron 8 of 10)	35460	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
102049	chr17	74870301	74870600	+	0	NA	intron (NM_001258012, intron 2 of 11)	AluSz|SINE|Alu	-1697	NM_001258016	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
21050	chr1	203270271	203270430	+	0	NA	Intergenic	Intergenic	-16802	NR_117097	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
181421	chr5	40796051	40796350	+	0	NA	intron (NM_001355028, intron 1 of 9)	AluSx1|SINE|Alu	1977	NM_001355037	5562		NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPK alpha 1|AMPKa1	protein kinase AMP-activated catalytic subunit alpha 1	protein-coding
225534	chr9	35759201	35759400	+	0	NA	TTS (NM_001080496)	TTS (NM_001080496)	-5024	NM_001044264	692094		NM_001044264	ENSG00000215183	MSMP	PSMP	microseminoprotein, prostate associated	protein-coding
69555	chr14	96592421	96593350	+	0	NA	Intergenic	CpG	90020	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
55698	chr12	107758121	107758380	+	0	NA	intron (NM_012406, intron 2 of 11)	AluJr|SINE|Alu	2887	NM_012406	11108		NM_012406	ENSG00000110851	PRDM4	PFM1	PR/SET domain 4	protein-coding
38014	chr11	35105651	35105950	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	32232	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
90077	chr16	90013851	90013950	+	0	NA	intron (NM_001288708, intron 1 of 4)	intron (NM_001288708, intron 1 of 4)	-3779	NM_024043	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
52756	chr12	56657571	56658250	+	0	NA	Intergenic	Intergenic	-11926	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
97633	chr17	44185951	44187950	+	0	NA	promoter-TSS (NM_001353174)	promoter-TSS (NM_001353174)	-1	NM_024107	79089		NM_024107	ENSG00000168591	TMUB2	FP2653	transmembrane and ubiquitin like domain containing 2	protein-coding
164690	chr3	67651151	67652350	+	0	NA	intron (NM_001177599, intron 1 of 10)	L1ME3A|LINE|L1	2862	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
14928	chr1	147549351	147549880	+	0	NA	intron (NM_004326, intron 1 of 9)	intron (NM_004326, intron 1 of 9)	8114	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
189179	chr5	171411071	171411630	+	0	NA	TTS (NM_001355006)	TTS (NM_001355006)	-8297	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
7687	chr1	35884871	35885030	+	0	NA	intron (NM_001317122, intron 1 of 18)	intron (NM_001317122, intron 1 of 18)	1741	NM_012199	26523		NM_012199	ENSG00000092847	AGO1	EIF2C|EIF2C1|GERP95|NEDLBAS|Q99|hAgo1	argonaute RISC component 1	protein-coding
71358	chr14	105477421	105478500	+	0	NA	intron (NR_073085, intron 1 of 7)	CpG	717	NR_073085	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
102192	chr17	75165951	75166250	+	0	NA	3' UTR (NM_001005849, exon 3 of 3)	3' UTR (NM_001005849, exon 3 of 3)	-11588	NM_001002033	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
128191	chr2	53949621	53950100	+	0	NA	intron (NM_014614, intron 1 of 46)	L1MB1|LINE|L1	21133	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
194799	chr6	34234251	34234350	+	0	NA	Intergenic	L2a|LINE|L2	-2573	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
218743	chr8	58845351	58845650	+	0	NA	intron (NM_014729, intron 4 of 8)	intron (NM_014729, intron 4 of 8)	-185647	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
137999	chr2	201256951	201257700	+	0	NA	promoter-TSS (NR_111983)	promoter-TSS (NR_111983)	-710	NM_001080125	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
160308	chr3	27478801	27479200	+	0	NA	intron (NR_135544, intron 1 of 24)	AluSz|SINE|Alu	5384	NR_135543	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
129203	chr2	68205851	68205950	+	0	NA	intron (NM_000945, intron 2 of 5)	AluSp|SINE|Alu	46632	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
207997	chr7	55515551	55516080	+	0	NA	intron (NM_001321242, intron 2 of 4)	intron (NM_001321242, intron 2 of 4)	11065	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
153861	chr22	30227801	30228000	+	0	NA	Intergenic	MIR3|SINE|MIR	-11294	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
68201	chr14	76848971	76849130	+	0	NA	intron (NR_169573, intron 6 of 12)	L2a|LINE|L2	22642	NR_169572	145497		NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
316	chr1	977971	978400	+	0	NA	intron (NM_001291366, intron 2 of 3)	CpG	2988	NM_001369898	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
122435	chr19	49475201	49477230	+	0	NA	intron (NM_001204502, intron 4 of 8)	intron (NM_001204502, intron 4 of 8)	1629	NM_001204503	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
110453	chr19	1998571	1998730	+	0	NA	intron (NM_017797, intron 1 of 8)	intron (NM_017797, intron 1 of 8)	17064	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
153605	chr22	27876021	27876480	+	0	NA	intron (NM_001284278, intron 7 of 11)	intron (NM_001284278, intron 7 of 11)	42964	NM_001284278	23760		NM_012399	ENSG00000180957	PITPNB	PI-TP-beta|PtdInsTP|VIB1B	phosphatidylinositol transfer protein beta	protein-coding
161291	chr3	39329551	39330250	+	0	NA	intron (NM_005201, intron 1 of 1)	intron (NM_005201, intron 1 of 1)	191	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
107147	chr18	35159001	35159400	+	0	NA	Intergenic	Intergenic	-81834	NM_032347	84307		NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
237149	chrX	107324821	107325080	+	0	NA	Intergenic	MER52A|LTR|ERV1	118318	NM_001169154	139212		NM_173494	ENSG00000080572	DNAAF6	CILD36|CXorf41|NYSAR97|PIH1D3|TWISTER	dynein axonemal assembly factor 6	protein-coding
183163	chr5	75235521	75235780	+	0	NA	intron (NM_001164443, intron 1 of 24)	L1MEf|LINE|L1	1228	NM_001372053	256006		NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
34207	chr10	129108851	129109150	+	0	NA	Intergenic	Intergenic	196167	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
64138	chr14	22874871	22875530	+	0	NA	exon (NM_001329226, exon 4 of 8)	exon (NM_001329226, exon 4 of 8)	3460	NM_001329226	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
94977	chr17	32266401	32267150	+	0	NA	intron (NM_001363834, intron 1 of 6)	CpG	599	NM_001363835	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
202942	chr6	160767251	160767580	+	0	NA	Intergenic	CpG	65171	NM_000301	5340		NM_000301	ENSG00000122194	PLG	HAE4	plasminogen	protein-coding
217478	chr8	28884271	28884830	+	0	NA	intron (NM_001363038, intron 1 of 16)	intron (NM_001363038, intron 1 of 16)	5365	NM_001172562	55756		NM_018250	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
228941	chr9	113349321	113350200	+	0	NA	exon (NM_001317943, exon 1 of 6)	exon (NM_001317943, exon 1 of 6)	219	NM_001317943	54836		NM_017688	ENSG00000119411	BSPRY	-	B-box and SPRY domain containing	protein-coding
116348	chr19	17863571	17863730	+	0	NA	TTS (NR_000012)	TTS (NR_000012)	1062	NR_000012	26780		NR_000012	ENSG00000207166	SNORA68	RNU68|SNORA68A|U68	small nucleolar RNA, H/ACA box 68	snoRNA
10028	chr1	56821101	56821380	+	0	NA	Intergenic	Intergenic	-1836	NM_001004303	199920		NM_001004303	ENSG00000187889	FYB2	ARAP|C1orf168	FYN binding protein 2	protein-coding
236759	chrX	78658951	78659350	+	0	NA	intron (NM_152694, intron 1 of 1)	intron (NM_152694, intron 1 of 1)	178	NM_152694	203430		NM_152694	ENSG00000179300	RTL3	Mar3|Mart3|SIRH9|ZCCHC5|ZHC5	retrotransposon Gag like 3	protein-coding
11726	chr1	91884421	91885200	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	1341	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
106757	chr18	23581621	23582080	+	0	NA	intron (NM_000271, intron 1 of 24)	intron (NM_000271, intron 1 of 24)	4656	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
41325	chr11	65900051	65901050	+	0	NA	promoter-TSS (NM_005438)	promoter-TSS (NM_005438)	-24	NR_125339	8061		NM_005438	ENSG00000175592	FOSL1	FRA|FRA1|fra-1	FOS like 1, AP-1 transcription factor subunit	protein-coding
64831	chr14	35118021	35119830	+	0	NA	intron (NM_017917, intron 1 of 12)	AluSx1|SINE|Alu	3617	NM_001305155	55012		NM_017917	ENSG00000092020	PPP2R3C	C14orf10|G4-1|G5pr|GDRM|MEGD|SPGF36	protein phosphatase 2 regulatory subunit B''gamma	protein-coding
164946	chr3	71238551	71238650	+	0	NA	intron (NM_001012505, intron 5 of 6)	MIRb|SINE|MIR	6477	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
79943	chr16	1761001	1761400	+	0	NA	intron (NM_001318852, intron 12 of 31)	intron (NM_001318852, intron 12 of 31)	10509	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
175586	chr4	75666321	75666930	+	0	NA	intron (NM_203505, intron 1 of 11)	intron (NM_203505, intron 1 of 11)	6534	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
132244	chr2	102422821	102423080	+	0	NA	intron (NM_003853, intron 2 of 11)	intron (NM_003853, intron 2 of 11)	4160	NM_003853	8807		NM_003853	ENSG00000115607	IL18RAP	ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB	interleukin 18 receptor accessory protein	protein-coding
153955	chr22	30353671	30353830	+	0	NA	intron (NM_005877, intron 1 of 15)	LTR2C|LTR|ERV1	-2874	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
39780	chr11	61944701	61945100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4921	NM_001363592	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
237092	chrX	103962351	103963230	+	0	NA	intron (NM_001350211, intron 2 of 3)	CpG	163	NM_194324	286527		NM_194324	ENSG00000158427	TMSB15B	TMSB15A|TMSL8|TMSNB|Tbeta15b	thymosin beta 15B	protein-coding
60510	chr13	41344571	41344830	+	0	NA	intron (NM_024561, intron 9 of 19)	MER20|DNA|hAT-Charlie	-32662	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
212826	chr7	130437451	130437750	+	0	NA	intron (NM_001257160, intron 1 of 2)	AluJo|SINE|Alu	3416	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
26654	chr10	22593071	22593230	+	0	NA	intron (NM_001330062, intron 3 of 9)	intron (NM_001330062, intron 3 of 9)	120958	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
38837	chr11	47319251	47319350	+	0	NA	intron (NR_164842, intron 29 of 33)	AluSz|SINE|Alu	33402	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
218644	chr8	57017801	57018000	+	0	NA	Intergenic	L1ME2|LINE|L1	-24033	NM_017813	54928		NM_017813	ENSG00000104331	BPNT2	GPAPP|IMP 3|IMP-3|IMPA3|IMPAD1	3'(2'), 5'-bisphosphate nucleotidase 2	protein-coding
170405	chr3	185483401	185483600	+	0	NA	3' UTR (NM_001242314, exon 15 of 15)	3' UTR (NM_001242314, exon 15 of 15)	15535	NM_080652	90407		NM_080652	ENSG00000163900	TMEM41A	2900010K02Rik	transmembrane protein 41A	protein-coding
41473	chr11	66137301	66138350	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	67553	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
15900	chr1	151568801	151569400	+	0	NA	intron (NM_001126337, intron 5 of 11)	intron (NM_001126337, intron 5 of 11)	23304	NR_030280	693139		NR_030280	ENSG00000207606	MIR554	MIRN554|hsa-mir-554	microRNA 554	ncRNA
82700	chr16	20763351	20764300	+	0	NA	promoter-TSS (NM_005622)	promoter-TSS (NM_005622)	-165	NM_202000	6296		NM_005622	ENSG00000005187	ACSM3	SA|SAH	acyl-CoA synthetase medium chain family member 3	protein-coding
50522	chr12	47834271	47835150	+	0	NA	Intergenic	Intergenic	-14807	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
175978	chr4	81493871	81494630	+	0	NA	Intergenic	Intergenic	-22343	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
17587	chr1	156856971	156858330	+	0	NA	intron (NM_014215, intron 1 of 21)	intron (NM_014215, intron 1 of 21)	1467	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
186529	chr5	138436671	138437100	+	0	NA	3' UTR (NM_016604, exon 24 of 24)	3' UTR (NM_016604, exon 24 of 24)	-2172	NM_016606	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
229833	chr9	125780051	125780350	+	0	NA	intron (NR_024122, intron 2 of 7)	SVA_D|Retroposon|SVA	32017	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
98982	chr17	48734101	48735380	+	0	NA	Intergenic	Intergenic	-5990	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
26215	chr10	14573071	14573300	+	0	NA	promoter-TSS (NM_001320737)	promoter-TSS (NM_001320737)	-810	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
221822	chr8	128048571	128048730	+	0	NA	promoter-TSS (NR_031612)	promoter-TSS (NR_031612)	-502	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
134692	chr2	144487201	144487400	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-32314	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
196009	chr6	42012271	42012600	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx1|SINE|Alu	36459	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
35022	chr11	555901	556600	+	0	NA	exon (NM_173573, exon 10 of 14).2	exon (NM_173573, exon 10 of 14).2	-3012	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
215862	chr8	7469471	7469830	+	0	NA	TTS (NM_001040702).2	TTS (NM_001040702).2	5432	NM_001040702	503618		NM_001040702	ENSG00000177023	DEFB104B	BD-4|DEFB-4|hBD-4	defensin beta 104B	protein-coding
88935	chr16	87833001	87833700	+	0	NA	intron (NM_003486, intron 9 of 9)	intron (NM_003486, intron 9 of 9)	1310	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
6582	chr1	28755801	28756150	+	0	NA	intron (NM_016258, intron 4 of 4)	intron (NM_016258, intron 4 of 4)	19035	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
112874	chr19	7612251	7612350	+	0	NA	exon (NM_001080429, exon 13 of 19)	exon (NM_001080429, exon 13 of 19)	-5139	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
163271	chr3	50303721	50304050	+	0	NA	promoter-TSS (NM_033159)	promoter-TSS (NM_033159)	-311	NM_153282	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
88457	chr16	85002651	85003230	+	0	NA	intron (NM_017740, intron 1 of 7)	intron (NM_017740, intron 1 of 7)	8595	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
165637	chr3	101785001	101785930	+	0	NA	non-coding (NR_145993, exon 4 of 7)	non-coding (NR_145993, exon 4 of 7)	5801	NM_001348998	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
87396	chr16	70520151	70521400	+	0	NA	intron (NR_158212, intron 1 of 18)	intron (NR_158212, intron 1 of 18)	2779	NM_001195139	25839		NM_015386	ENSG00000103051	COG4	CDG2J|COD1|SWILS	component of oligomeric golgi complex 4	protein-coding
10156	chr1	61049991	61051280	+	0	NA	Intergenic	CpG	-26592	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
76081	chr15	72482651	72483530	+	0	NA	intron (NM_005744, intron 1 of 13)	AluSz6|SINE|Alu	8760	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
190791	chr6	710721	711780	+	0	NA	Intergenic	CpG	-18109	NR_073064	55770		NM_018303	ENSG00000112685	EXOC2	NEDFACH|SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
52276	chr12	54548851	54550180	+	0	NA	promoter-TSS (NM_000924)	promoter-TSS (NM_000924)	-86	NM_000924	5153		NM_000924	ENSG00000123360	PDE1B	HEL-S-79p|PDE1B1|PDES1B	phosphodiesterase 1B	protein-coding
70383	chr14	101928721	101929180	+	0	NA	TTS (NM_001161725)	TTS (NM_001161725)	-35623	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
57280	chr12	121634301	121636030	+	0	NA	intron (NM_032790, intron 2 of 2)	intron (NM_032790, intron 2 of 2)	8615	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
98791	chr17	48194121	48195180	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-38139	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
210320	chr7	99488871	99489980	+	0	NA	intron (NM_001345968, intron 2 of 2)	LTR16C|LTR|ERVL	10856	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
28986	chr10	63262671	63263180	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	6298	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
52083	chr12	54056171	54056530	+	0	NA	TTS (NM_014620)	TTS (NM_014620)	-1904	NR_026655	440101		NR_026655	ENSG00000248265	FLJ12825	-	uncharacterized LOC440101	ncRNA
1128	chr1	2137251	2138280	+	0	NA	intron (NR_146911, intron 2 of 15)	intron (NR_146911, intron 2 of 15)	33049	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
83645	chr16	28304171	28304800	+	0	NA	intron (NM_001024401, intron 1 of 3)	MIRb|SINE|MIR	11960	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
152259	chr22	20243521	20244100	+	0	NA	intron (NM_023004, intron 1 of 1)	intron (NM_023004, intron 1 of 1)	5401	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
176115	chr4	83077471	83077830	+	0	NA	Intergenic	AluY|SINE|Alu	32239	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
33537	chr10	119268471	119269780	+	0	NA	intron (NM_005308, intron 1 of 15)	LTR84b|LTR|ERVL	61554	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
77471	chr15	84502101	84502500	+	0	NA	promoter-TSS (NR_033787).2	promoter-TSS (NR_033787).2	-275	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
153367	chr22	24440351	24440650	+	0	NA	intron (NR_028483, intron 6 of 7)	intron (NR_028483, intron 6 of 7)	8381	NM_001278497	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
190460	chr5	180079971	180080150	+	0	NA	Intergenic	Intergenic	-8301	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
75857	chr15	69653001	69653400	+	0	NA	intron (NR_126437, intron 3 of 5)	intron (NR_126437, intron 3 of 5)	61000	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
45556	chr11	118783501	118784080	+	0	NA	intron (NM_004397, intron 2 of 13)	AluSx1|SINE|Alu	7158	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
239256	chrY	13381301	13382100	+	0	NA	intron (NM_001258265, intron 4 of 23)	Tigger3b|DNA|TcMar-Tigger	-97477	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
209470	chr7	76513871	76514230	+	0	NA	exon (NM_182684, exon 5 of 7)	exon (NM_182684, exon 5 of 7)	3498	NM_001347684	105375355		NM_030570	ENSG00000243566	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
41060	chr11	65490271	65490430	+	0	NA	Intergenic	Intergenic	-7388	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
87158	chr16	69320071	69320230	+	0	NA	exon (NM_013245, exon 7 of 11)	exon (NM_013245, exon 7 of 11)	8800	NM_013245	27183		NM_013245	ENSG00000132612	VPS4A	CIMDAG|SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
103888	chr17	79793921	79794300	+	0	NA	3' UTR (NM_020649, exon 5 of 5)	3' UTR (NM_020649, exon 5 of 5)	2967	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
48576	chr12	10291901	10292130	+	0	NA	intron (NM_001351060, intron 2 of 8)	L1PA8|LINE|L1	-12431	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
78877	chr15	100595751	100596180	+	0	NA	intron (NR_148017, intron 1 of 6)	intron (NR_148017, intron 1 of 6)	6219	NR_148018	55180		NM_018148	ENSG00000140471	LINS1	LINS|MRT27|WINS1	lines homolog 1	protein-coding
10398	chr1	65066471	65068300	+	0	NA	intron (NM_001321854, intron 1 of 25)	CpG-1213	361	NM_001321853	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
210577	chr7	100361521	100361780	+	0	NA	intron (NM_001371931, intron 4 of 4)	AluSx1|SINE|Alu	3647	NM_178238	29990		NM_013440	ENSG00000121716	PILRB	FDFACT1|FDFACT2	paired immunoglobin like type 2 receptor beta	protein-coding
164979	chr3	71305621	71306330	+	0	NA	TTS (NR_126463)	TTS (NR_126463)	-1204	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
150255	chr21	41460471	41460900	+	0	NA	Intergenic	Intergenic	28635	NM_001282920	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
105128	chr17	82225271	82225730	+	0	NA	Intergenic	Intergenic	-2906	NM_001042422	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
3716	chr1	16614671	16614900	+	0	NA	Intergenic	L2b|LINE|L2	-1221	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
41095	chr11	65531551	65532280	+	0	NA	intron (NM_020680, intron 8 of 17)	intron (NM_020680, intron 8 of 17)	6832	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
223775	chr8	144537151	144537530	+	0	NA	intron (NM_001308207, intron 7 of 11)	intron (NM_001308207, intron 7 of 11)	-8229	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
85477	chr16	50694471	50695050	+	0	NA	intron (NR_163434, intron 1 of 12)	L2a|LINE|L2	1154	NM_001370466	64127		NM_022162	ENSG00000167207	NOD2	ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS	nucleotide binding oligomerization domain containing 2	protein-coding
225086	chr9	33339601	33340000	+	0	NA	intron (NM_147134, intron 12 of 15)	THE1B-int|LTR|ERVL-MaLR	49284	NM_147134	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
237176	chrX	107706001	107706200	+	0	NA	Intergenic	MIR3|SINE|MIR	10408	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
192518	chr6	25025871	25026330	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	16188	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
87851	chr16	75764221	75764500	+	0	NA	Intergenic	Intergenic	-37870	NM_001355613	105371346		NM_001355613	ENSG00000283755	CPHXL	CPHXL1	cytoplasmic polyadenylated homeobox like	protein-coding
68886	chr14	91330801	91331230	+	0	NA	intron (NM_001080414, intron 10 of 29)	intron (NM_001080414, intron 10 of 29)	-77135	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
137670	chr2	197454971	197455930	+	0	NA	intron (NM_001320820, intron 1 of 4)	AluJb|SINE|Alu	1686	NM_001320819	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
175301	chr4	68175651	68175750	+	0	NA	Intergenic	Intergenic	-6592	NR_015446	100130017		NR_015446	ENSG00000293344	FTLP10	-	ferritin light chain pseudogene 10	pseudo
233925	chrX	1813821	1814280	+	0	NA	Intergenic	Intergenic	198917	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
86692	chr16	67526501	67527100	+	0	NA	intron (NR_104656, intron 1 of 1)	intron (NR_104656, intron 1 of 1)	1945	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
2592	chr1	9861471	9861630	+	0	NA	intron (NM_020248, intron 5 of 5)	intron (NM_020248, intron 5 of 5)	-37024	NM_014944	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
7030	chr1	31925251	31926150	+	0	NA	intron (NM_080391, intron 1 of 5)	AluY|SINE|Alu	12118	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
219859	chr8	85106651	85107750	+	0	NA	promoter-TSS (NM_001349638)	promoter-TSS (NM_001349638)	-38	NM_033402	85444		NM_033402	ENSG00000133739	LRRCC1	CLERC|CLERK|SAP2|VFL1	leucine rich repeat and coiled-coil centrosomal protein 1	protein-coding
226685	chr9	75093801	75094200	+	0	NA	intron (NM_012383, intron 1 of 9)	MIRb|SINE|MIR	5486	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
175034	chr4	52719021	52719480	+	0	NA	intron (NR_145129, intron 4 of 4)	AluY|SINE|Alu	6001	NR_003016	677810		NR_003016	ENSG00000212588	SNORA26	HBI-6	small nucleolar RNA, H/ACA box 26	snoRNA
183310	chr5	76626421	76627080	+	0	NA	intron (NM_001285462, intron 2 of 23)	MER119|DNA|hAT-Charlie	-3347	NM_004101	2151		NM_004101	ENSG00000164220	F2RL2	PAR-3|PAR3	coagulation factor II thrombin receptor like 2	protein-coding
46664	chr11	128713901	128714930	+	0	NA	intron (NM_001271010, intron 1 of 9)	MIR|SINE|MIR	-18392	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
159077	chr3	11847801	11848150	+	0	NA	Intergenic	Intergenic	-1090	NM_001366031	132001		NM_138807	ENSG00000144559	TAMM41	C3orf31|COXPD56|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
3683	chr1	16508421	16508680	+	0	NA	Intergenic	Intergenic	5735	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
11203	chr1	88736801	88737000	+	0	NA	intron (NM_001320708, intron 1 of 20)	intron (NM_001320708, intron 1 of 20)	-51696	NR_110682	101927891		NR_110682	ENSG00000237505	PKN2-AS1	-	PKN2 antisense RNA 1	ncRNA
189146	chr5	171336751	171337100	+	0	NA	Intergenic	Intergenic	27677	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
5200	chr1	24961171	24961780	+	0	NA	intron (NM_001031680, intron 1 of 5)	MIRc|SINE|MIR	3535	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
124431	chr19	58474021	58474500	+	0	NA	3' UTR (NM_014347, exon 4 of 4)	3' UTR (NM_014347, exon 4 of 4)	-2092	NM_017908	55663		NM_017908	ENSG00000083838	ZNF446	ZKSCAN20|ZSCAN30|ZSCAN52	zinc finger protein 446	protein-coding
184202	chr5	95871171	95871330	+	0	NA	Intergenic	Intergenic	19018	NR_026936	202299		NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
226418	chr9	70492151	70492480	+	0	NA	Intergenic	AluJo|SINE|Alu	-77658	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
185058	chr5	116032171	116032800	+	0	NA	promoter-TSS (NM_001195581)	promoter-TSS (NM_001195581)	13	NM_001195581	644100		NM_001195581	ENSG00000268223	ARL14EPL	-	ADP ribosylation factor like GTPase 14 effector protein like	protein-coding
61709	chr13	74092721	74093330	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	40904	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
196303	chr6	43051421	43051880	+	0	NA	exon (NM_014780, exon 3 of 26)	exon (NM_014780, exon 3 of 26)	2201	NM_001374872	9820		NM_014780	ENSG00000044090	CUL7	3M1|CUL-7|KIAA0076|dJ20C7.5	cullin 7	protein-coding
65701	chr14	52744171	52744950	+	0	NA	intron (NM_001130701, intron 2 of 11)	intron (NM_001130701, intron 2 of 11)	14394	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
12235	chr1	100421901	100422880	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	69884	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
66032	chr14	58278521	58278780	+	0	NA	intron (NR_029435, intron 2 of 3)	L1ME3G|LINE|L1	-9383	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
156729	chr22	41802751	41803250	+	0	NA	intron (NM_001382346, intron 2 of 7)	AluSp|SINE|Alu	2321	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
102076	chr17	74953871	74954030	+	0	NA	intron (NM_030630, intron 14 of 18)	intron (NM_030630, intron 14 of 18)	-16739	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
169985	chr3	179561251	179561850	+	0	NA	Intergenic	Intergenic	-1330	NM_177989	86		NM_004301	ENSG00000136518	ACTL6A	ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K|SMARCN1	actin like 6A	protein-coding
55897	chr12	109723821	109724080	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	10125	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
48772	chr12	11622071	11622380	+	0	NA	Intergenic	MER41A|LTR|ERV1	-27449	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
212595	chr7	129053671	129053900	+	0	NA	intron (NR_167926, intron 1 of 21)	intron (NR_167926, intron 1 of 21)	1326	NM_001382222	23534		NM_012470	ENSG00000064419	TNPO3	IPO12|LGMD1F|LGMDD2|MTR10A|TRN-SR|TRN-SR2|TRNSR	transportin 3	protein-coding
88610	chr16	85606421	85606680	+	0	NA	Intergenic	Intergenic	-4859	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
60845	chr13	45467271	45467880	+	0	NA	intron (NM_031431, intron 1 of 22)	AluSz6|SINE|Alu	2636	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
197273	chr6	70680701	70680900	+	0	NA	intron (NM_001281440, intron 1 of 10)	AluSx|SINE|Alu	12270	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
213744	chr7	140407221	140407880	+	0	NA	intron (NM_001008749, intron 1 of 3)	L2a|LINE|L2	3492	NM_001008749	401409		NM_001008749	ENSG00000146955	RAB19	RAB19B	RAB19, member RAS oncogene family	protein-coding
15402	chr1	150237301	150237500	+	0	NA	Intergenic	AluSp|SINE|Alu	-1288	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
158705	chr3	8083371	8084130	+	0	NA	Intergenic	L1MA4|LINE|L1	-67443	NR_110131	101927394		NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
33948	chr10	124625751	124626150	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-78078	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
173195	chr4	6781801	6783000	+	0	NA	promoter-TSS (NM_001100590)	promoter-TSS (NM_001100590)	-327	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
182181	chr5	56711301	56711700	+	0	NA	Intergenic	L1PA16|LINE|L1	61371	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
116367	chr19	17883701	17883900	+	0	NA	intron (NM_000453, intron 11 of 14)	(GGGGC)n|Simple_repeat|Simple_repeat	11855	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
146842	chr20	51422121	51422380	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	30727	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
866	chr1	1623201	1623400	+	0	NA	intron (NM_001170687, intron 2 of 19)	CpG	7445	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
107168	chr18	35386571	35387450	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-9673	NM_001322291	252884		NM_145756	ENSG00000186496	ZNF396	ZSCAN14	zinc finger protein 396	protein-coding
110188	chr19	1675171	1675330	+	0	NA	Intergenic	Intergenic	-22635	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
235333	chrX	43836471	43836730	+	0	NA	intron (NM_000898, intron 3 of 14)	intron (NM_000898, intron 3 of 14)	45850	NM_000898	4129		NM_000898	ENSG00000069535	MAOB	-	monoamine oxidase B	protein-coding
40604	chr11	64642071	64642780	+	0	NA	intron (NM_015080, intron 17 of 22)	CpG	1120	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
120849	chr19	45518551	45518950	+	0	NA	intron (NM_003370, intron 3 of 12)	AluJb|SINE|Alu	11271	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
213643	chr7	139720621	139720880	+	0	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	57248	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
73120	chr15	41232701	41233100	+	0	NA	intron (NM_007236, intron 1 of 6)	L3|LINE|CR1	1632	NM_007236	11261		NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|SPAX9|Sid470p|p22|p24	calcineurin like EF-hand protein 1	protein-coding
122527	chr19	49626551	49626850	+	0	NA	TTS (NM_020719)	TTS (NM_020719)	13443	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
42919	chr11	73392401	73392750	+	0	NA	intron (NM_152222, intron 6 of 10)	intron (NM_152222, intron 6 of 10)	15907	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
32987	chr10	110514071	110514530	+	0	NA	Intergenic	Intergenic	16393	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
69626	chr14	97702671	97703600	+	0	NA	Intergenic	Intergenic	-16477	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
155414	chr22	38397821	38399530	+	0	NA	5' UTR (NM_001289912, exon 1 of 15)	5' UTR (NM_001289912, exon 1 of 15)	240	NM_001289912	102800317		NM_001289912	ENSG00000283900	TPTEP2-CSNK1E	LOC400927-CSNK1E	TPTEP2-CSNK1E readthrough	protein-coding
152883	chr22	22647571	22648330	+	0	NA	TTS (NM_199127)	TTS (NM_199127)	1638	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
115494	chr19	15381301	15381880	+	0	NA	intron (NM_014371, intron 12 of 13)	intron (NM_014371, intron 12 of 13)	-1803	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
162676	chr3	48926321	48927300	+	0	NA	intron (NM_001349209, intron 2 of 15)	AluSq2|SINE|Alu	-7425	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
105210	chr17	82327101	82327600	+	0	NA	intron (NM_003004, intron 1 of 4)	intron (NM_003004, intron 1 of 4)	6416	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
17249	chr1	156361271	156361430	+	0	NA	Intergenic	AluJb|SINE|Alu	-7861	NM_020407	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
33771	chr10	122703801	122704150	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-4129	NM_001010912	399814		NM_001010912	ENSG00000183559	C10orf120	bA318C4.1	chromosome 10 open reading frame 120	protein-coding
62109	chr13	95260371	95260530	+	0	NA	intron (NM_001301830, intron 1 of 19)	intron (NM_001301830, intron 1 of 19)	41001	NM_001105515	10257		NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4 (PEL blood group)	protein-coding
124223	chr19	57282071	57282450	+	0	NA	intron (NM_006635, intron 1 of 2)	intron (NM_006635, intron 1 of 2)	1775	NM_006635	10794		NM_006635	ENSG00000197714	ZNF460	HZF8|ZNF272	zinc finger protein 460	protein-coding
204672	chr7	5489771	5490530	+	0	NA	exon (NM_001321213, exon 5 of 5)	exon (NM_001321213, exon 5 of 5)	5767	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
38638	chr11	46362371	46362600	+	0	NA	intron (NM_001105540, intron 1 of 31)	intron (NM_001105540, intron 1 of 31)	879	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
119313	chr19	39878901	39879100	+	0	NA	intron (NM_003890, intron 20 of 28)	AluSx1|SINE|Alu	-32621	NM_001436	2091		NM_001436	ENSG00000105202	FBL	FIB|FLRN|Nop1|RNU3IP1	fibrillarin	protein-coding
159393	chr3	13425501	13425900	+	0	NA	Intergenic	MLT2B2|LTR|ERVL	-5378	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
67743	chr14	73634871	73635030	+	0	NA	Intergenic	AluJo|SINE|Alu	-10036	NM_031427	83544		NM_031427	ENSG00000119661	DNAL1	C14orf168|CILD16|LC1	dynein axonemal light chain 1	protein-coding
7636	chr1	35568651	35569550	+	0	NA	Intergenic	Intergenic	-4214	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
39805	chr11	61971421	61972380	+	0	NA	Intergenic	Intergenic	-4266	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
188164	chr5	150446551	150447280	+	0	NA	exon (NM_001025070, exon 3 of 5)	exon (NM_001025070, exon 3 of 5)	2824	NM_005617	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
175850	chr4	78937401	78937600	+	0	NA	intron (NR_146462, intron 1 of 6)	(ATC)n|Simple_repeat|Simple_repeat	1938	NR_146464	152559		NM_177453	ENSG00000163291	PAQR3	RKTG	progestin and adipoQ receptor family member 3	protein-coding
232068	chr9	133476071	133476230	+	0	NA	intron (NM_017585, intron 4 of 9)	intron (NM_017585, intron 4 of 9)	2949	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
223466	chr8	144019571	144021230	+	0	NA	intron (NM_198572, intron 1 of 4)	intron (NM_198572, intron 1 of 4)	8120	NM_001134374	375686		NM_198572	ENSG00000186583	SPATC1	SPATA15	spermatogenesis and centriole associated 1	protein-coding
39491	chr11	61018051	61018600	+	0	NA	exon (NM_006725, exon 12 of 13)	exon (NM_006725, exon 12 of 13)	46645	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
124347	chr19	58325451	58325900	+	0	NA	intron (NR_144444, intron 1 of 2)	intron (NR_144444, intron 1 of 2)	-1319	NM_181846	342945		NM_181846	ENSG00000182318	ZSCAN22	HKR2|ZNF50	zinc finger and SCAN domain containing 22	protein-coding
205234	chr7	8014221	8014500	+	0	NA	intron (NM_138426, intron 2 of 7)	intron (NM_138426, intron 2 of 7)	45564	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
154206	chr22	31491851	31491950	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-2058	NM_019843	56478		NM_019843	ENSG00000184708	EIF4ENIF1	4E-T|Clast4	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding
58332	chr12	131452521	131452780	+	0	NA	Intergenic	Intergenic	105180	NR_103736	338797		NM_001025466		LINC02370	-	long intergenic non-protein coding RNA 2370	ncRNA
122845	chr19	50459651	50460480	+	0	NA	exon (NM_004533, exon 24 of 28)	exon (NM_004533, exon 24 of 28)	-16442	NM_206538	284361		NM_175063	ENSG00000161671	EMC10	C19orf63|HSM1|HSS1|NEDDFAS	ER membrane protein complex subunit 10	protein-coding
28591	chr10	52755551	52755650	+	0	NA	promoter-TSS (NR_155748)	promoter-TSS (NR_155748)	-196	NR_155748	105378305		NR_155748	ENSG00000231131	LOC105378305	-	uncharacterized LOC105378305	ncRNA
78169	chr15	90482101	90482650	+	0	NA	intron (NM_003870, intron 28 of 37)	intron (NM_003870, intron 28 of 37)	-47548	NM_001042574	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
159142	chr3	12659321	12659580	+	0	NA	intron (NM_001354691, intron 1 of 16)	intron (NM_001354691, intron 1 of 16)	4058	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
122370	chr19	49361121	49361580	+	0	NA	intron (NM_001256659, intron 1 of 11)	intron (NM_001256659, intron 1 of 11)	167	NM_001256661	8463		NM_003598	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain transcription factor 2	protein-coding
207946	chr7	52274171	52274530	+	0	NA	Intergenic	CpG	-761283	NM_182595	285877		NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin like 12	protein-coding
81100	chr16	4363021	4363580	+	0	NA	intron (NM_001351729, intron 14 of 27)	AluSx3|SINE|Alu	-8548	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
98266	chr17	46189921	46190680	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	2482	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
51028	chr12	49749421	49749680	+	0	NA	intron (NM_001098576, intron 1 of 9)	AluSz|SINE|Alu	7741	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
186390	chr5	135039001	135039880	+	0	NA	intron (NR_105050, intron 1 of 1)	CpG	607	NR_105049	101927953		NR_105049	ENSG00000249082	EPIST	C5orf66-AS1	esophagus epithelial intergenic associated transcript	ncRNA
50726	chr12	48973451	48973550	+	0	NA	Intergenic	Intergenic	-1765	NM_003394	7480		NM_003394	ENSG00000169884	WNT10B	SHFM6|STHAG8|WNT-12	Wnt family member 10B	protein-coding
6751	chr1	30728451	30728830	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-5055	NM_002379	4146		NM_002379	ENSG00000162510	MATN1	CMP|CRTM	matrilin 1	protein-coding
81468	chr16	8897701	8898100	+	0	NA	intron (NR_135826, intron 25 of 30)	AluJr|SINE|Alu	-28888	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
79984	chr16	1795321	1795580	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-542	NR_027389	3483		NM_004970	ENSG00000099769	IGFALS	ACLSD|ALS	insulin like growth factor binding protein acid labile subunit	protein-coding
3145	chr1	12506221	12506480	+	0	NA	promoter-TSS (NR_003022)	promoter-TSS (NR_003022)	-896	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
119019	chr19	38908751	38909700	+	0	NA	TTS (NM_001369700)	TTS (NM_001369700)	2933	NM_001243212	643669		NM_001243212	ENSG00000262484	CCER2	-	coiled-coil glutamate rich protein 2	protein-coding
159099	chr3	12553851	12554550	+	0	NA	intron (NR_165360, intron 1 of 1)	intron (NR_165360, intron 1 of 1)	-2814	NM_001271707	23609		NM_014160	ENSG00000075975	MKRN2	HSPC070|RNF62	makorin ring finger protein 2	protein-coding
223498	chr8	144077621	144079830	+	0	NA	promoter-TSS (NM_019037)	promoter-TSS (NM_019037)	53	NM_019037	54512		NM_019037	ENSG00000178896	EXOSC4	RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A	exosome component 4	protein-coding
232096	chr9	133676921	133677980	+	0	NA	intron (NM_001134707, intron 17 of 20)	intron (NM_001134707, intron 17 of 20)	-20042	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
109503	chr19	829821	830430	+	0	NA	intron (NM_001700, intron 3 of 4)	AluSg|SINE|Alu	2288	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
217822	chr8	37267371	37267950	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	226253	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
135932	chr2	171900051	171900550	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-5994	NR_047549	8604		NM_003705	ENSG00000115840	SLC25A12	AGC1|ARALAR|DEE39|EIEE39	solute carrier family 25 member 12	protein-coding
24045	chr1	235290701	235291280	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJr4|SINE|Alu	-36226	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
106700	chr18	23397971	23398330	+	0	NA	intron (NR_148385, intron 3 of 13)	intron (NR_148385, intron 3 of 13)	39811	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
113729	chr19	10471821	10472230	+	0	NA	Intergenic	AluSx|SINE|Alu	19093	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
197540	chr6	79042621	79043050	+	0	NA	intron (NM_017934, intron 7 of 39)	intron (NM_017934, intron 7 of 39)	35419	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
205380	chr7	14446621	14447200	+	0	NA	intron (NM_001350707, intron 21 of 25)	LTR77|LTR|ERV1	394540	NM_145695	1607		NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
139490	chr2	224523201	224524680	+	0	NA	intron (NM_003590, intron 3 of 15)	L1MB3|LINE|L1	46015	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
13765	chr1	117051051	117052230	+	0	NA	intron (NR_110786, intron 1 of 3)	L2a|LINE|L2	7850	NR_110786	101929099		NR_110786	ENSG00000236137	CD101-AS1	-	CD101 antisense RNA 1	ncRNA
141956	chr20	1291051	1291350	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	22473	NM_015685	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
188505	chr5	154862651	154862950	+	0	NA	intron (NM_001301075, intron 1 of 5)	intron (NM_001301075, intron 1 of 5)	4173	NM_001301075	9337		NM_004779	ENSG00000155508	CNOT8	CAF1|CALIF|Caf1b|POP2|hCAF1	CCR4-NOT transcription complex subunit 8	protein-coding
164997	chr3	71357051	71357150	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-52329	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
12058	chr1	98403901	98404100	+	0	NA	Intergenic	Intergenic	193289	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
199153	chr6	111731051	111731300	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	27956	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
210599	chr7	100423351	100423650	+	0	NA	intron (NM_001258008, intron 2 of 15)	intron (NM_001258008, intron 2 of 15)	5203	NM_001258008	55063		NM_017984	ENSG00000078487	ZCWPW1	ZCW1	zinc finger CW-type and PWWP domain containing 1	protein-coding
14874	chr1	146458221	146458480	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	-27982	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
84829	chr16	31106771	31106930	+	0	NA	Intergenic	AluJr|SINE|Alu	-1536	NM_005881	10295		NM_005881	ENSG00000103507	BCKDK	BCKDKD|BDK	branched chain keto acid dehydrogenase kinase	protein-coding
28262	chr10	45705971	45706200	+	0	NA	Intergenic	MER39|LTR|ERV1	-20958	NM_001367393	253725		NM_015262	ENSG00000172661	WASHC2C	FAM21A|FAM21C|VPEF	WASH complex subunit 2C	protein-coding
45752	chr11	119196601	119197380	+	0	NA	Intergenic	Intergenic	-1149	NM_001145018	283152		NM_001033658	ENSG00000248712	DRC12	CCDC153	dynein regulatory complex subunit 12 homolog	protein-coding
144086	chr20	33729401	33729900	+	0	NA	Intergenic	AluJb|SINE|Alu	-2110	NM_001282935	84905		NM_032819	ENSG00000131061	ZNF341	HIES3	zinc finger protein 341	protein-coding
235039	chrX	40088501	40088980	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	9218	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
105037	chr17	82058351	82058730	+	0	NA	TTS (NM_004127)	TTS (NM_004127)	6642	NM_212492	2873		NM_004127	ENSG00000169727	GPS1	COPS1|CSN1|SGN1	G protein pathway suppressor 1	protein-coding
220824	chr8	102830671	102831050	+	0	NA	intron (NM_148174, intron 9 of 11)	intron (NM_148174, intron 9 of 11)	24038	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
13790	chr1	117365921	117368140	+	0	NA	promoter-TSS (NM_006699)	promoter-TSS (NM_006699)	-419	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
137808	chr2	199979851	199980260	+	0	NA	Intergenic	Intergenic	-24564	NM_001039693	129450		NM_152382	ENSG00000162971	TYW5	C2orf60|hTYW5	tRNA-yW synthesizing protein 5	protein-coding
141606	chr2	241662471	241662630	+	0	NA	intron (NM_013325, intron 7 of 12)	intron (NM_013325, intron 7 of 12)	24265	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
219283	chr8	67603621	67603880	+	0	NA	intron (NM_020361, intron 2 of 10)	intron (NM_020361, intron 2 of 10)	142610	NM_020361	57094		NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
99693	chr17	50817071	50817650	+	0	NA	Intergenic	Intergenic	-17224	NM_001330341	124857		NM_175575	ENSG00000173714	WFIKKN2	GASP-1|WFDC20B|WFIKKNRP|hGASP-1	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding
139761	chr2	229927751	229928050	+	0	NA	intron (NM_174899, intron 1 of 3)	intron (NM_174899, intron 1 of 3)	-4720	NM_001348335	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
207690	chr7	45756721	45757050	+	0	NA	intron (NR_024271, intron 4 of 12)	(ATA)n|Simple_repeat|Simple_repeat	12133	NR_024271	641977		NR_024271	ENSG00000291207	SEPTIN7P2	SEPT13|SEPT7B|SEPT7P2	septin 7 pseudogene 2	pseudo
20945	chr1	202236201	202236650	+	0	NA	intron (NM_001017404, intron 4 of 15)	intron (NM_001017404, intron 4 of 15)	22270	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
61217	chr13	49540301	49540700	+	0	NA	TTS (NM_001352504)	TTS (NM_001352504)	43444	NM_001040444	51131		NM_001040443	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
140503	chr2	233203401	233203600	+	0	NA	intron (NM_001017915, intron 25 of 26).2	intron (NM_001017915, intron 25 of 26).2	-48071	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
198025	chr6	90136951	90137250	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	159743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
71013	chr14	104755721	104756230	+	0	NA	intron (NM_006427, intron 2 of 3)	intron (NM_006427, intron 2 of 3)	2828	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
125748	chr2	20781721	20781980	+	0	NA	intron (NM_001282722, intron 1 of 4)	intron (NM_001282722, intron 1 of 4)	41251	NM_021925	60526		NM_021925	ENSG00000118961	LDAH	C2orf43|hLDAH	lipid droplet associated hydrolase	protein-coding
19470	chr1	174969821	174970530	+	0	NA	intron (NM_001243764, intron 2 of 6)	intron (NM_001243764, intron 2 of 6)	5397	NM_001243764	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
43366	chr11	76860471	76861850	+	0	NA	intron (NM_001300953, intron 1 of 9)	CpG	242	NM_001300955	55331		NM_018367	ENSG00000078124	ACER3	APHC|PHCA|PLDECO	alkaline ceramidase 3	protein-coding
47640	chr12	6233701	6233900	+	0	NA	intron (NM_001769, intron 4 of 7)	intron (NM_001769, intron 4 of 7)	33400	NM_001769	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
107196	chr18	35973801	35974330	+	0	NA	intron (NM_031446, intron 2 of 4)	L2a|LINE|L2	1386	NM_031446	83608		NM_031446	ENSG00000141428	C18orf21	HsT3108|PNAS-124|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
27173	chr10	28538401	28538900	+	0	NA	intron (NM_100486, intron 3 of 12)	AluJr4|SINE|Alu	5532	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
219912	chr8	86160271	86160430	+	0	NA	Intergenic	Intergenic	61440	NM_152565	245972		NM_152565	ENSG00000147614	ATP6V0D2	ATP6D2|VMA6	ATPase H+ transporting V0 subunit d2	protein-coding
23891	chr1	234960751	234961250	+	0	NA	intron (NR_125945, intron 1 of 3)	intron (NR_125945, intron 1 of 3)	2999	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
184185	chr5	95824081	95825930	+	0	NA	Intergenic	Intergenic	-2132	NM_001243659	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
23405	chr1	228273071	228273630	+	0	NA	exon (NM_001271223, exon 21 of 116)	exon (NM_001271223, exon 21 of 116)	-59686	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
238818	chrX	154425101	154425500	+	0	NA	intron (NR_103768, intron 1 of 1)	L1ME3B|LINE|L1	3179	NR_103768	158960		NR_103768	ENSG00000197180	ATP6AP1-DT	CH17-340M24.3	ATP6AP1 divergent transcript	ncRNA
181233	chr5	39191001	39192000	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	28063	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
51156	chr12	50162921	50163380	+	0	NA	intron (NM_001281731, intron 1 of 10)	AluJo|SINE|Alu	4219	NM_001331070	91012		NM_147190	ENSG00000139624	CERS5	LASS5|Trh4	ceramide synthase 5	protein-coding
8183	chr1	39564421	39565950	+	0	NA	non-coding (NR_125979, exon 1 of 4)	non-coding (NR_125979, exon 1 of 4)	115	NR_125979	101929516		NR_125979		PABPC4-AS1	-	PABPC4 antisense RNA 1	ncRNA
151063	chr21	44742471	44742730	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-31028	NM_001272037	54084		NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|ECTD14|STHAG10|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding
165930	chr3	107497501	107497700	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-25362	NM_020235	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
78678	chr15	95734671	95734830	+	0	NA	Intergenic	Intergenic	301657	NR_027133	145820		NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
52552	chr12	56143071	56144130	+	0	NA	exon (NM_001184796, exon 30 of 31)	exon (NM_001184796, exon 30 of 31)	-8987	NM_001199629	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
232404	chr9	136023121	136023330	+	0	NA	intron (NM_144653, intron 2 of 5)	intron (NM_144653, intron 2 of 5)	-61852	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
70344	chr14	101854051	101855050	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	44687	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
192740	chr6	26382101	26382330	+	0	NA	promoter-TSS (NM_001197240)	promoter-TSS (NM_001197240)	-893	NM_181531	10385		NM_006995	ENSG00000124508	BTN2A2	BT2.2|BTF2|BTN2.2	butyrophilin subfamily 2 member A2	protein-coding
62936	chr13	111216101	111216530	+	0	NA	intron (NM_001354052, intron 4 of 20)	intron (NM_001354052, intron 4 of 20)	13255	NM_001320853	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
73731	chr15	45185571	45186200	+	0	NA	intron (NM_138356, intron 2 of 7)	L2b|LINE|L2	2081	NM_001301169	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
157181	chr22	43018721	43018980	+	0	NA	Intergenic	Intergenic	-3674	NM_001349969	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
147180	chr20	56469921	56470330	+	0	NA	intron (NM_016407, intron 1 of 8)	L2a|LINE|L2	1498	NM_016407	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
5028	chr1	24505951	24506050	+	0	NA	intron (NM_001251983, intron 1 of 3)	intron (NM_001251983, intron 1 of 3)	-1594	NM_001251978	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
31692	chr10	97572221	97572780	+	0	NA	promoter-TSS (NM_001129981)	promoter-TSS (NM_001129981)	-3	NM_020349	26287		NM_020349	ENSG00000165887	ANKRD2	ARPP	ankyrin repeat domain 2	protein-coding
162649	chr3	48845401	48845600	+	0	NA	intron (NM_004157, intron 1 of 10)	intron (NM_004157, intron 1 of 10)	2374	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
156538	chr22	41427571	41427730	+	0	NA	Intergenic	AluSz|SINE|Alu	19151	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
52044	chr12	54011451	54012080	+	0	NA	3' UTR (NM_022658, exon 2 of 2)	3' UTR (NM_022658, exon 2 of 2)	2780	NM_022658	3224		NM_022658	ENSG00000037965	HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
16816	chr1	155598801	155599680	+	0	NA	Intergenic	Intergenic	-10930	NM_001350782	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
231888	chr9	133029971	133031280	+	0	NA	promoter-TSS (NR_135119)	promoter-TSS (NR_135119)	-50	NM_001286709	9328		NM_012087	ENSG00000148308	GTF3C5	TFIIIC63|TFIIICepsilon|TFiiiC2-63	general transcription factor IIIC subunit 5	protein-coding
89336	chr16	88750321	88751080	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	7933	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
23198	chr1	227305971	227306130	+	0	NA	intron (NM_001366011, intron 1 of 35)	L2|LINE|L2	12442	NM_001366011	8476		NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|MRCKalpha|PK428	CDC42 binding protein kinase alpha	protein-coding
105804	chr18	2933801	2934000	+	0	NA	intron (NM_001375809, intron 8 of 19)	intron (NM_001375809, intron 8 of 19)	12723	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
189222	chr5	171601271	171601500	+	0	NA	Intergenic	Intergenic	181738	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
45272	chr11	118009821	118010280	+	0	NA	Intergenic	MIRc|SINE|MIR	23656	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
104090	chr17	80259901	80261200	+	0	NA	promoter-TSS (NM_001256071)	promoter-TSS (NM_001256071)	-302	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
120876	chr19	45558151	45558830	+	0	NA	intron (NM_025136, intron 1 of 1)	intron (NM_025136, intron 1 of 1)	26312	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
214591	chr7	150661151	150661450	+	0	NA	Intergenic	Intergenic	-24406	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
188932	chr5	160464001	160464830	+	0	NA	Intergenic	Intergenic	-3836	NR_132748	107075116		NR_132748	ENSG00000253522	MIR3142HG	-	MIR3142 host gene	ncRNA
237238	chrX	109890751	109891180	+	0	NA	Intergenic	Intergenic	20564	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
221478	chr8	124484901	124485380	+	0	NA	intron (NM_007218, intron 1 of 1)	AluSx1|SINE|Alu	10260	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
11522	chr1	90973671	90973830	+	0	NA	intron (NM_201269, intron 2 of 5)	intron (NM_201269, intron 2 of 5)	47758	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
29385	chr10	70107221	70107780	+	0	NA	intron (NM_018649, intron 7 of 8)	intron (NM_018649, intron 7 of 8)	25325	NM_032797	84883		NM_032797	ENSG00000042286	AIFM2	AMID|FSP1|PRG3	apoptosis inducing factor mitochondria associated 2	protein-coding
135505	chr2	161994351	161994980	+	0	NA	intron (NR_166824, intron 25 of 25)	intron (NR_166824, intron 25 of 25)	79550	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
228675	chr9	107337871	107338230	+	0	NA	Intergenic	MIRc|SINE|MIR	53281	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
12126	chr1	100057171	100057330	+	0	NA	intron (NM_033055, intron 2 of 11)	L1MA3|LINE|L1	19155	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
229443	chr9	121446071	121446230	+	0	NA	non-coding (NR_168459, exon 8 of 8)	non-coding (NR_168459, exon 8 of 8)	52560	NM_001382587	2681		NM_001382584	ENSG00000204136	GGTA1	GGTA|GGTA1P|GLYT2|a1/3GTP	glycoprotein alpha-galactosyltransferase 1 (inactive)	protein-coding
130486	chr2	85563001	85563530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1772	NM_000821	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
214417	chr7	149830001	149830200	+	0	NA	intron (NR_163594, intron 100 of 102)	intron (NR_163594, intron 100 of 102)	-8275	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
119160	chr19	39395371	39395530	+	0	NA	intron (NM_001317770, intron 3 of 3)	L2b|LINE|L2	4072	NM_001317770	55588		NM_017592	ENSG00000063322	MED29	IXL|MED2	mediator complex subunit 29	protein-coding
195378	chr6	36690221	36690480	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-7476	NM_001257357	401258		NM_207498	ENSG00000255587	RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
47011	chr12	287371	287530	+	0	NA	intron (NM_001042603, intron 27 of 27)	intron (NM_001042603, intron 27 of 27)	-24577	NM_001190997	6540		NM_016615	ENSG00000010379	SLC6A13	GAT-2|GAT2|GAT3	solute carrier family 6 member 13	protein-coding
175782	chr4	77795121	77795980	+	0	NA	intron (NM_001365006, intron 1 of 11)	MSTA|LTR|ERVL-MaLR	23514	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
219666	chr8	80500871	80501830	+	0	NA	intron (NM_023929, intron 2 of 6)	intron (NM_023929, intron 2 of 6)	15124	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
187883	chr5	148805771	148806130	+	0	NA	Intergenic	Intergenic	-20661	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
101925	chr17	74466051	74467300	+	0	NA	promoter-TSS (NM_001330457)	promoter-TSS (NM_001330457)	41	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
169492	chr3	169767821	169768650	+	0	NA	exon (NM_032487, exon 2 of 2)	exon (NM_032487, exon 2 of 2)	1326	NM_032487	84517		NM_032487	ENSG00000184378	ACTRT3	ARP-T3|ARPM1	actin related protein T3	protein-coding
19609	chr1	179880951	179881050	+	0	NA	Intergenic	AluY|SINE|Alu	-1285	NM_015602	26092		NM_015602	ENSG00000143337	TOR1AIP1	LAP1|LAP1B|LAP1C|LGMD2Y	torsin 1A interacting protein 1	protein-coding
78367	chr15	91448351	91448450	+	0	NA	Intergenic	Intergenic	-14939	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
172224	chr4	1322771	1322930	+	0	NA	intron (NM_001017405, intron 4 of 8)	intron (NM_001017405, intron 4 of 8)	13059	NM_001297433	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
88041	chr16	81438051	81439330	+	0	NA	Intergenic	Intergenic	-6480	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
19063	chr1	169895771	169895930	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1891	NM_181093	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
353	chr1	1010721	1011250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2512	NM_005101	9636		NM_005101	ENSG00000187608	ISG15	G1P2|IFI15|IMD38|IP17|UCRP|hUCRP	ISG15 ubiquitin like modifier	protein-coding
27008	chr10	26826321	26826580	+	0	NA	intron (NR_145410, intron 1 of 11)	Tigger1|DNA|TcMar-Tigger	34508	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
195651	chr6	37897471	37897830	+	0	NA	intron (NM_021943, intron 1 of 5)	L1ME3|LINE|L1	77923	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
116605	chr19	18273421	18273600	+	0	NA	intron (NM_001145304, intron 1 of 3)	AluSp|SINE|Alu	942	NM_001145304	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
62307	chr13	99026071	99026530	+	0	NA	intron (NM_001318849, intron 1 of 54)	L1MB8|LINE|L1	-10515	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
153348	chr22	24419801	24420000	+	0	NA	intron (NR_103546, intron 18 of 19)	intron (NR_103546, intron 18 of 19)	-3697	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
82885	chr16	21565721	21566150	+	0	NA	Intergenic	Intergenic	-31286	NM_001288659	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
127727	chr2	43537201	43537600	+	0	NA	intron (NR_144316, intron 21 of 36)	intron (NR_144316, intron 21 of 36)	58574	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
725	chr1	1438451	1438780	+	0	NA	intron (NM_022834, intron 2 of 2)	intron (NM_022834, intron 2 of 2)	2925	NM_022834	64856		NM_022834	ENSG00000179403	VWA1	HMNMYO|HMNR7|WARP	von Willebrand factor A domain containing 1	protein-coding
84560	chr16	30598021	30598600	+	0	NA	Intergenic	LTR40c|LTR|ERVL	11518	NR_104166	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
176903	chr4	102796721	102797500	+	0	NA	3' UTR (NM_181893, exon 7 of 7)	3' UTR (NM_181893, exon 7 of 7)	20073	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
77300	chr15	82347751	82348050	+	0	NA	intron (NM_001164465, intron 1 of 8)	intron (NM_001164465, intron 1 of 8)	1575	NM_001164465	647042		NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family like 10	protein-coding
219698	chr8	80881051	80881350	+	0	NA	Intergenic	L1ME3G|LINE|L1	-6419	NM_001033723	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
95766	chr17	38669451	38669550	+	0	NA	Intergenic	L2a|LINE|L2	5457	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
107072	chr18	34723371	34723530	+	0	NA	intron (NM_032978, intron 1 of 16)	intron (NM_032978, intron 1 of 16)	13152	NM_032978	1837		NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding
50203	chr12	46191071	46191230	+	0	NA	intron (NM_001278387, intron 17 of 17)	L1PA6|LINE|L1	75366	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
45625	chr11	118920921	118921550	+	0	NA	intron (NM_001378214, intron 1 of 8)	intron (NM_001378214, intron 1 of 8)	4691	NR_165445	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
89907	chr16	89699551	89700800	+	0	NA	intron (NM_152339, intron 2 of 2)	MIRb|SINE|MIR	1530	NM_152339	124044		NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
195901	chr6	41725371	41725530	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	8160	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
116955	chr19	18857171	18857350	+	0	NA	intron (NM_001297549, intron 14 of 23)	intron (NM_001297549, intron 14 of 23)	25301	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
124841	chr2	7743421	7743950	+	0	NA	Intergenic	Intergenic	155970	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
63782	chr14	21266801	21267880	+	0	NA	intron (NM_004500, intron 1 of 8)	intron (NM_004500, intron 1 of 8)	2102	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
93352	chr17	18227151	18227900	+	0	NA	intron (NM_004140, intron 1 of 22)	AluJb|SINE|Alu	1890	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
92832	chr17	16204721	16205150	+	0	NA	intron (NM_006311, intron 1 of 45)	intron (NM_006311, intron 1 of 45)	-10296	NM_001190438	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
84595	chr16	30660501	30661730	+	0	NA	intron (NM_001105079, intron 2 of 17)	intron (NM_001105079, intron 2 of 17)	2684	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
69448	chr14	94218551	94218650	+	0	NA	intron (NM_058237, intron 3 of 24)	(CA)n|Simple_repeat|Simple_repeat	43139	NM_001348142	57718		NM_020958	ENSG00000119698	PPP4R4	CFAP14|KIAA1622|PP4R4	protein phosphatase 4 regulatory subunit 4	protein-coding
33251	chr10	114492521	114493230	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	34038	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
176653	chr4	99946101	99947630	+	0	NA	promoter-TSS (NM_001278311)	promoter-TSS (NM_001278311)	-247	NM_001031723	79982		NM_024920	ENSG00000164031	DNAJB14	EGNR9427|PRO34683	DnaJ heat shock protein family (Hsp40) member B14	protein-coding
34719	chr10	133568951	133570030	+	0	NA	non-coding (NR_033789, exon 1 of 2)	non-coding (NR_033789, exon 1 of 2)	468	NR_033789	399833		NM_001001678		SPRNP1	-	shadow of prion protein pseudogene 1	pseudo
186738	chr5	139298301	139298750	+	0	NA	intron (NM_001194956, intron 1 of 13)	AluSz6|SINE|Alu	4775	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
44787	chr11	112961251	112961700	+	0	NA	promoter-TSS (NM_000615)	promoter-TSS (NM_000615)	55	NM_181351	4684		NM_000615	ENSG00000149294	NCAM1	CD56|MSK39|NCAM	neural cell adhesion molecule 1	protein-coding
217795	chr8	33553651	33554450	+	0	NA	intron (NM_024787, intron 2 of 5)	intron (NM_024787, intron 2 of 5)	13078	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
98480	chr17	47204601	47205200	+	0	NA	Intergenic	Intergenic	-4162	NM_001002841	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
209335	chr7	76225421	76225900	+	0	NA	intron (NM_001291831, intron 1 of 15)	AluJr|SINE|Alu	23764	NM_001110199	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
30408	chr10	78937621	78937950	+	0	NA	Intergenic	Intergenic	129663	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
174456	chr4	39714671	39714930	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSc5|SINE|Alu	16664	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
189197	chr5	171426101	171426700	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	6753	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
171175	chr3	195655921	195656900	+	0	NA	Intergenic	Intergenic	-1629	NR_003265	727956		NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	SDHA pseudogene 2	pseudo
51398	chr12	51970751	51972100	+	0	NA	intron (NM_020327, intron 1 of 8)	intron (NM_020327, intron 1 of 8)	18045	NM_020327	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
151369	chr21	45880401	45880800	+	0	NA	intron (NM_001382276, intron 6 of 18)	L2b|LINE|L2	32450	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
48252	chr12	8446771	8447350	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-8902	NM_001317999	93978		NM_001007033	ENSG00000205846	CLEC6A	CLEC4N|CLECSF10|dectin-2|hDECTIN-2	C-type lectin domain containing 6A	protein-coding
144534	chr20	35714471	35714750	+	0	NA	intron (NM_184234, intron 10 of 16)	intron (NM_184234, intron 10 of 16)	15205	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
30160	chr10	74183401	74183600	+	0	NA	intron (NM_001369124, intron 1 of 9)	intron (NM_001369124, intron 1 of 9)	6737	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
63991	chr14	22336901	22337100	+	0	NA	Intergenic	Intergenic	95753	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
176754	chr4	101790551	101791150	+	0	NA	5' UTR (NM_001127507, exon 1 of 16)	5' UTR (NM_001127507, exon 1 of 16)	120	NM_017935	55024		NM_017935	ENSG00000153064	BANK1	BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding
160645	chr3	31566271	31566430	+	0	NA	intron (NM_178862, intron 1 of 15)	MIR|SINE|MIR	33425	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
48434	chr12	9691451	9691950	+	0	NA	intron (NR_036693, intron 3 of 3)	L1M4|LINE|L1	21987	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
72796	chr15	40046921	40048200	+	0	NA	intron (NR_040060, intron 2 of 2)	intron (NR_040060, intron 2 of 2)	8249	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
75658	chr15	67564771	67565130	+	0	NA	intron (NM_145160, intron 3 of 21)	MIRb|SINE|MIR	15856	NM_001206804	5607		NM_002757	ENSG00000137764	MAP2K5	HsT17454|MAPKK5|MEK5|PRKMK5	mitogen-activated protein kinase kinase 5	protein-coding
115006	chr19	14062671	14062830	+	0	NA	promoter-TSS (NM_001145028)	promoter-TSS (NM_001145028)	-674	NM_001145028	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
25762	chr10	11019271	11019530	+	0	NA	intron (NM_001326345, intron 1 of 13)	intron (NM_001326345, intron 1 of 13)	644	NM_001326345	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
194777	chr6	34153001	34153280	+	0	NA	intron (NM_001256809, intron 1 of 8)	intron (NM_001256809, intron 1 of 8)	2482	NM_001256809	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
232172	chr9	134172721	134172980	+	0	NA	Intergenic	Intergenic	-8286	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
49200	chr12	15875071	15875680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7012	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
135164	chr2	157628101	157629480	+	0	NA	promoter-TSS (NM_145259)	promoter-TSS (NM_145259)	74	NM_001111033	130399		NM_145259	ENSG00000123612	ACVR1C	ACVRLK7|ALK7	activin A receptor type 1C	protein-coding
177144	chr4	108123201	108123600	+	0	NA	intron (NM_016269, intron 3 of 11)	L1MEd|LINE|L1	43397	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
137977	chr2	201204771	201205130	+	0	NA	intron (NM_001206524, intron 6 of 7)	intron (NM_001206524, intron 6 of 7)	21809	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
207979	chr7	55369651	55369950	+	0	NA	intron (NM_018697, intron 1 of 8)	LTR41|LTR|ERVL	4463	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
116861	chr19	18616501	18616930	+	0	NA	intron (NM_012109, intron 4 of 7)	intron (NM_012109, intron 4 of 7)	3845	NM_012109	25789		NM_012109	ENSG00000105696	TMEM59L	BSMAP|C19orf4	transmembrane protein 59 like	protein-coding
22836	chr1	225431801	225432380	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3235	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
30195	chr10	74588871	74589980	+	0	NA	intron (NM_001369123, intron 8 of 9)	intron (NM_001369123, intron 8 of 9)	-60101	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
23356	chr1	228149201	228150600	+	0	NA	promoter-TSS (NM_020435)	promoter-TSS (NM_020435)	-30	NM_020435	57165		NM_020435	ENSG00000198835	GJC2	CX46.6|Cx47|GJA12|HLD2|LMPH1C|LMPHM3|PMLDAR|SPG44	gap junction protein gamma 2	protein-coding
111276	chr19	3549871	3550480	+	0	NA	intron (NM_174983, intron 2 of 9)	MLT1E|LTR|ERVL-MaLR	7409	NM_001287529	126321		NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501|SLC59B1	major facilitator superfamily domain containing 12	protein-coding
74237	chr15	56780201	56780600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-46314	NM_001002843	54816		NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
196631	chr6	44272771	44273750	+	0	NA	exon (NM_001137560, exon 2 of 3)	exon (NM_001137560, exon 2 of 3)	2810	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
225786	chr9	37482021	37483000	+	0	NA	Intergenic	Intergenic	-3425	NM_001282766	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
65948	chr14	55589351	55589650	+	0	NA	intron (NM_001079521, intron 1 of 43)	AluSx1|SINE|Alu	9293	NM_004986	3895		NM_004986	ENSG00000126777	KTN1	CG1|KNT|MU-RMS-40.19	kinectin 1	protein-coding
64033	chr14	22522651	22523400	+	0	NA	Intergenic	Intergenic	34037	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
85407	chr16	50309801	50310150	+	0	NA	intron (NM_001114, intron 18 of 25)	intron (NM_001114, intron 18 of 25)	17359	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
223075	chr8	143402171	143403300	+	0	NA	Intergenic	Intergenic	-14944	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
181914	chr5	54743971	54744950	+	0	NA	promoter-TSS (NR_104658)	promoter-TSS (NR_104658)	-202	NR_104658	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
99829	chr17	55116621	55117080	+	0	NA	intron (NM_178509, intron 16 of 17)	intron (NM_178509, intron 16 of 17)	-148065	NM_001162862	1353		NM_004375	ENSG00000166260	COX11	COX11P|MC4DN23	cytochrome c oxidase copper chaperone COX11	protein-coding
10123	chr1	59296371	59297600	+	0	NA	promoter-TSS (NM_001113411)	promoter-TSS (NM_001113411)	-109	NR_103473	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
136420	chr2	176189901	176190200	+	0	NA	exon (NM_024501, exon 2 of 2)	exon (NM_024501, exon 2 of 2)	-1092	NR_033979	401022		NR_033979	ENSG00000224189	HAGLR	HOXD-AS1|MIR7704HG|Mdgt|STEEL	HOXD antisense growth-associated long non-coding RNA	ncRNA
45523	chr11	118735471	118735830	+	0	NA	Intergenic	AluSc|SINE|Alu	55298	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
22967	chr1	226069551	226069650	+	0	NA	intron (NR_002315, intron 3 of 3)	AluSx|SINE|Alu	6873	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
78807	chr15	99504801	99505000	+	0	NA	Intergenic	Intergenic	-60517	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
213407	chr7	137899101	137899600	+	0	NA	intron (NM_001318246, intron 8 of 11)	intron (NM_001318246, intron 8 of 11)	33638	NM_001318246	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
48506	chr12	9868251	9868650	+	0	NA	intron (NM_005127, intron 1 of 4)	intron (NM_005127, intron 1 of 4)	1409	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
237825	chrX	129986321	129986580	+	0	NA	intron (NM_001379450, intron 1 of 13)	intron (NM_001379450, intron 1 of 13)	3815	NM_021946	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
115935	chr19	16631571	16631930	+	0	NA	Intergenic	Intergenic	-3546	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
182855	chr5	69630121	69630380	+	0	NA	promoter-TSS (NR_157804).6	promoter-TSS (NR_157804).6	-895	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
53349	chr12	64644321	64644980	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJb|SINE|Alu	-22045	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
84693	chr16	30783101	30783680	+	0	NA	exon (NM_001345970, exon 3 of 3)	exon (NM_001345970, exon 3 of 3)	3815	NM_001080417	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
175633	chr4	76215801	76216000	+	0	NA	intron (NM_001242936, intron 1 of 7)	MLT1H1|LTR|ERVL-MaLR	1860	NM_001242936	100129583		NM_001136570	ENSG00000189157	FAM47E	-	family with sequence similarity 47 member E	protein-coding
188984	chr5	163521171	163521330	+	0	NA	Intergenic	L1MC4|LINE|L1	15631	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
39020	chr11	47750171	47750780	+	0	NA	intron (NM_015308, intron 6 of 16)	AluY|SINE|Alu	16866	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
156029	chr22	39957151	39957730	+	0	NA	intron (NM_004810, intron 3 of 7)	L2a|LINE|L2	10623	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
102776	chr17	76298301	76298500	+	0	NA	intron (NM_032134, intron 3 of 18)	AluY|SINE|Alu	9280	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
234123	chrX	9708501	9709250	+	0	NA	intron (NM_001139467, intron 12 of 16)	AluJb|SINE|Alu	56972	NM_000273	4935		NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
207524	chr7	44809501	44809850	+	0	NA	Intergenic	AluY|SINE|Alu	12994	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
169165	chr3	156664551	156665350	+	0	NA	Intergenic	Intergenic	-9640	NM_015508	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
60933	chr13	46297351	46297730	+	0	NA	non-coding (NR_047493, exon 1 of 1)	non-coding (NR_047493, exon 1 of 1)	304	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
61779	chr13	75219651	75220200	+	0	NA	Intergenic	Intergenic	20456	NR_027466	647288		NR_027466	ENSG00000214249	CTAGE11P	-	CTAGE family member 11, pseudogene	pseudo
185758	chr5	132257351	132257850	+	0	NA	promoter-TSS (NM_003687)	promoter-TSS (NM_003687)	-58	NM_001131027	8572		NM_003687	ENSG00000131435	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
65771	chr14	54438751	54439050	+	0	NA	intron (NM_005776, intron 1 of 4)	MSTB1|LTR|ERVL-MaLR	2474	NM_005776	10175		NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family member 1	protein-coding
11273	chr1	89104751	89105450	+	0	NA	Intergenic	Intergenic	21014	NM_004120	2634		NM_004120	ENSG00000162645	GBP2	-	guanylate binding protein 2	protein-coding
5207	chr1	24969821	24970530	+	0	NA	Intergenic	Intergenic	-5165	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
214171	chr7	144828901	144829380	+	0	NA	intron (NR_146934, intron 1 of 6)	L1MA9|LINE|L1	6800	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
159777	chr3	16310771	16311080	+	0	NA	intron (NM_001352982, intron 10 of 10)	AluSp|SINE|Alu	45713	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
175734	chr4	77707951	77708250	+	0	NA	Intergenic	LTR16A|LTR|ERVL	102280	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
7037	chr1	31932521	31933050	+	0	NA	intron (NM_001369859, intron 1 of 6)	intron (NM_001369859, intron 1 of 6)	5033	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
182961	chr5	71446801	71447680	+	0	NA	promoter-TSS (NR_134269).3	promoter-TSS (NR_134269).3	-484	NR_134269	102724392		NR_134268		LINC02197	-	long intergenic non-protein coding RNA 2197	ncRNA
10788	chr1	77652351	77652850	+	0	NA	intron (NR_164775, intron 1 of 14)	L1MB7|LINE|L1	30058	NM_001376155	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
110968	chr19	2950001	2951380	+	0	NA	Intergenic	CpG	-5719	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
189320	chr5	172149271	172149700	+	0	NA	intron (NM_005990, intron 2 of 18)	MIRb|SINE|MIR	38739	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
107988	chr18	58659701	58659900	+	0	NA	Intergenic	L3|LINE|CR1	-11665	NM_173844	10892		NM_006785	ENSG00000172175	MALT1	IMD12|MLT|MLT1|PCASP1	MALT1 paracaspase	protein-coding
11086	chr1	85278751	85279880	+	0	NA	Intergenic	L2|LINE|L2	-2683	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
126306	chr2	27260901	27261600	+	0	NA	intron (NM_001318950, intron 2 of 8)	intron (NM_001318950, intron 2 of 8)	1797	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
195219	chr6	36137301	36137700	+	0	NA	intron (NM_002754, intron 8 of 11)	AluY|SINE|Alu	6987	NM_002754	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
92549	chr17	8954321	8955600	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	10747	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
156247	chr22	40399971	40401150	+	0	NA	intron (NM_001350047, intron 1 of 20)	AluSx4|SINE|Alu	29966	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
166950	chr3	125240601	125240800	+	0	NA	intron (NM_001348424, intron 8 of 9)	AluJb|SINE|Alu	-27952	NM_024628	84561		NM_024628	ENSG00000221955	SLC12A8	CCC9	solute carrier family 12 member 8	protein-coding
203391	chr6	170582671	170583000	+	0	NA	3' UTR (NM_144781, exon 3 of 3)	3' UTR (NM_144781, exon 3 of 3)	1802	NM_002598	5134		NM_002598	ENSG00000071994	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
232592	chr9	136408501	136409190	+	0	NA	intron (NM_001039708, intron 1 of 7)	intron (NM_001039708, intron 1 of 7)	-1728	NM_001282944	23203		NM_015160	ENSG00000165688	PMPCA	Alpha-MPP|CLA1|CPD3|INPP5E|MAS2|P-55|SCAR2	peptidase, mitochondrial processing subunit alpha	protein-coding
71242	chr14	105185321	105185630	+	0	NA	Intergenic	Intergenic	-4152	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
196709	chr6	44942371	44942730	+	0	NA	intron (NM_001350327, intron 8 of 9)	L1MEf|LINE|L1	255220	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
156323	chr22	40649701	40650100	+	0	NA	Intergenic	Intergenic	-13181	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
67024	chr14	67532701	67533780	+	0	NA	promoter-TSS (NM_020715)	promoter-TSS (NM_020715)	-50	NM_020715	57475		NM_020715	ENSG00000054690	PLEKHH1	-	pleckstrin homology, MyTH4 and FERM domain containing H1	protein-coding
229365	chr9	121059851	121060280	+	0	NA	intron (NM_001317163, intron 1 of 40)	intron (NM_001317163, intron 1 of 40)	-9790	NM_001735	727		NM_001735	ENSG00000106804	C5	C5D|C5a|C5b|CPAMD4|ECLZB	complement C5	protein-coding
42612	chr11	72141121	72141380	+	0	NA	Intergenic	L1MC4|LINE|L1	5525	NM_000804	2352		NM_000804	ENSG00000110203	FOLR3	FR-G|FR-gamma|FRgamma|gamma-hFR	folate receptor gamma	protein-coding
83584	chr16	28155501	28155900	+	0	NA	intron (NM_001270940, intron 8 of 24)	intron (NM_001270940, intron 8 of 24)	56265	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
155558	chr22	38724701	38725330	+	0	NA	intron (NM_004286, intron 6 of 11)	intron (NM_004286, intron 6 of 11)	19071	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
87786	chr16	75435471	75435780	+	0	NA	Intergenic	Tigger17|DNA|TcMar-Tigger	-2122	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
68751	chr14	91048471	91048630	+	0	NA	intron (NM_001322228, intron 1 of 15)	intron (NM_001322228, intron 1 of 15)	11574	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
201877	chr6	150747471	150747630	+	0	NA	intron (NM_001329799, intron 2 of 15)	intron (NM_001329799, intron 2 of 15)	26451	NM_001329806	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
34757	chr11	189251	190480	+	0	NA	Intergenic	TAR1|Satellite|telo	-3213	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
131879	chr2	98723901	98724380	+	0	NA	intron (NM_012214, intron 2 of 15)	L2c|LINE|L2	6992	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
20833	chr1	201506601	201507980	+	0	NA	promoter-TSS (NM_001193571)	promoter-TSS (NM_001193571)	77	NR_160748	107985246		NR_160746	ENSG00000224536	CSRP1-AS1	-	CSRP1 antisense RNA 1	ncRNA
166600	chr3	119238121	119238580	+	0	NA	intron (NM_212543, intron 1 of 8)	intron (NM_212543, intron 1 of 8)	2528	NM_003778	8702		NM_003778	ENSG00000121578	B4GALT4	B4Gal-T4|beta4Gal-T4	beta-1,4-galactosyltransferase 4	protein-coding
171595	chr3	197186951	197187430	+	0	NA	intron (NM_001366214, intron 5 of 25)	intron (NM_001366214, intron 5 of 25)	-3059	NM_001204388	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
218376	chr8	43238671	43238830	+	0	NA	Intergenic	SAR|Satellite|Satellite	-53692	NM_001002920	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
189577	chr5	175508671	175508830	+	0	NA	intron (NM_001322978, intron 2 of 10)	AluSc|SINE|Alu	30190	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
70793	chr14	103532501	103532950	+	0	NA	exon (NM_152307, exon 3 of 4)	exon (NM_152307, exon 3 of 4)	3529	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
145627	chr20	44738721	44739250	+	0	NA	intron (NR_132377, intron 1 of 4)	MLT1J2|LTR|ERVL-MaLR	-6880	NM_022358	60598		NM_022358	ENSG00000124249	KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	potassium two pore domain channel subfamily K member 15	protein-coding
38282	chr11	43309851	43310530	+	0	NA	Intergenic	Intergenic	-1806	NM_001142930	8539		NM_006595	ENSG00000166181	API5	AAC-11|AAC11	apoptosis inhibitor 5	protein-coding
150916	chr21	44225021	44226150	+	0	NA	3' UTR (NM_001283052, exon 7 of 7)	3' UTR (NM_001283052, exon 7 of 7)	15358	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
76130	chr15	72531401	72532080	+	0	NA	intron (NM_005744, intron 2 of 13)	L1ME3B|LINE|L1	-55477	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
110996	chr19	3039001	3039200	+	0	NA	intron (NM_001144761, intron 2 of 19)	AluSq2|SINE|Alu	8535	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
224452	chr9	15485901	15486380	+	0	NA	intron (NM_001317898, intron 5 of 10)	intron (NM_001317898, intron 5 of 10)	24149	NM_021144	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
98381	chr17	46499101	46499500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13410	NM_001006607	474170		NM_001006607	ENSG00000238083	LRRC37A2	LRRC37	leucine rich repeat containing 37 member A2	protein-coding
82770	chr16	21434201	21434430	+	0	NA	non-coding (NR_024456, exon 1 of 1).2	non-coding (NR_024456, exon 1 of 1).2	140	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
21149	chr1	203682251	203683480	+	0	NA	5' UTR (NM_001684, exon 2 of 21)	5' UTR (NM_001684, exon 2 of 21)	-46716	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
184357	chr5	97004301	97004880	+	0	NA	intron (NM_175920, intron 9 of 17)	intron (NM_175920, intron 9 of 17)	46157	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
25141	chr10	4233521	4233780	+	0	NA	intron (NR_108040, intron 2 of 2)	intron (NR_108040, intron 2 of 2)	10262	NR_108040	100652988		NR_108040		LINC00702	-	long intergenic non-protein coding RNA 702	ncRNA
62867	chr13	110561491	110562430	+	0	NA	promoter-TSS (NM_017817)	promoter-TSS (NM_017817)	-238	NM_017817	55647		NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
121489	chr19	47130371	47132150	+	0	NA	intron (NR_027280, intron 1 of 8)	intron (NR_027280, intron 1 of 8)	425	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
110640	chr19	2229801	2230400	+	0	NA	3' UTR (NM_001300836, exon 6 of 6)	3' UTR (NM_001300836, exon 6 of 6)	4049	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
27735	chr10	35124921	35125180	+	0	NA	Intergenic	MIR|SINE|MIR	-1791	NM_001881	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
210146	chr7	98233121	98233380	+	0	NA	intron (NM_015395, intron 11 of 25)	intron (NM_015395, intron 11 of 25)	18982	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
77401	chr15	83107151	83107850	+	0	NA	promoter-TSS (NM_001330385)	promoter-TSS (NM_001330385)	-145	NR_148561	53346		NM_023003	ENSG00000136404	TM6SF1	-	transmembrane 6 superfamily member 1	protein-coding
77895	chr15	89132721	89133250	+	0	NA	intron (NM_152924, intron 3 of 10)	intron (NM_152924, intron 3 of 10)	44529	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
43281	chr11	75816811	75817650	+	0	NA	intron (NM_003369, intron 1 of 14)	intron (NM_003369, intron 1 of 14)	2020	NM_003369	7405		NM_003369	ENSG00000198382	UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
144582	chr20	35781871	35782230	+	0	NA	intron (NM_016436, intron 1 of 17)	L1MB3|LINE|L1	10035	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
107549	chr18	48781351	48781750	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	110950	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
142917	chr20	18276801	18277300	+	0	NA	Intergenic	MIR3|SINE|MIR	-11178	NM_001283006	7692		NM_003434	ENSG00000125846	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
237547	chrX	120487721	120488400	+	0	NA	Intergenic	L2c|LINE|L2	-18711	NM_013995	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
128419	chr2	55268701	55269980	+	0	NA	promoter-TSS (NM_001321005)	promoter-TSS (NM_001321005)	-92	NM_001321001	4528		NM_002453	ENSG00000085760	MTIF2	-	mitochondrial translational initiation factor 2	protein-coding
25848	chr10	11231121	11231580	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	66320	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
52206	chr12	54372001	54372430	+	0	NA	intron (NM_001290002, intron 5 of 8)	intron (NM_001290002, intron 5 of 8)	-7729	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
169504	chr3	169945401	169945680	+	0	NA	non-coding (NR_027622, exon 2 of 2)	non-coding (NR_027622, exon 2 of 2)	21194	NR_027622	100128164		NR_024409	ENSG00000239219	FHL1P1	-	FHL1 pseudogene 1	pseudo
190091	chr5	177811551	177814780	+	0	NA	Intergenic	Intergenic	-3658	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
77860	chr15	88896571	88896730	+	0	NA	Intergenic	Intergenic	-1106	NM_178232	145864		NM_178232	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
180859	chr5	32604571	32604980	+	0	NA	TTS (NM_006713)	TTS (NM_006713)	19218	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
227409	chr9	89548751	89549450	+	0	NA	Intergenic	L1ME3B|LINE|L1	-50987	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
206254	chr7	29262301	29262900	+	0	NA	intron (NM_001293072, intron 1 of 12)	intron (NM_001293072, intron 1 of 12)	-53630	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
39390	chr11	60334051	60334300	+	0	NA	promoter-TSS (NM_139249)	promoter-TSS (NM_139249)	-647	NM_139249	245802		NM_139249	ENSG00000166926	MS4A6E	-	membrane spanning 4-domains A6E	protein-coding
157855	chr22	48832751	48832850	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-33970	NR_038944	100128946		NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA
148102	chr20	63330121	63330380	+	0	NA	intron (NM_020882, intron 35 of 35)	intron (NM_020882, intron 35 of 35)	-29738	NR_110634	100130587		NR_110634	ENSG00000203900	LOC100130587	-	uncharacterized LOC100130587	ncRNA
3033	chr1	12141171	12141730	+	0	NA	intron (NM_001281430, intron 13 of 13)	intron (NM_001281430, intron 13 of 13)	-25493	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
184851	chr5	111741451	111741750	+	0	NA	intron (NM_001142474, intron 2 of 3)	intron (NM_001142474, intron 2 of 3)	14651	NM_001142483	9315		NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
173462	chr4	8468601	8469250	+	0	NA	intron (NM_152544, intron 9 of 10)	intron (NM_152544, intron 9 of 10)	28128	NM_001350233	152992		NM_024950	ENSG00000155275	TRMT44	C4orf23|METTL19|TRM44	tRNA methyltransferase 44 homolog	protein-coding
136602	chr2	178478121	178479430	+	0	NA	promoter-TSS (NM_001135212)	promoter-TSS (NM_001135212)	-175	NM_181342	51661		NM_016105	ENSG00000079150	FKBP7	FKBP23|PPIase	FKBP prolyl isomerase 7	protein-coding
75484	chr15	66287301	66287980	+	0	NA	Intergenic	Intergenic	-5669	NM_133375	115752		NM_133375	ENSG00000166938	DIS3L	DIS3L1	DIS3 like exosome 3'-5' exoribonuclease	protein-coding
218043	chr8	38804951	38805880	+	0	NA	promoter-TSS (NM_001352802)	promoter-TSS (NM_001352802)	-35	NM_001352791	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
105312	chr17	82550471	82551080	+	0	NA	intron (NM_004514, intron 1 of 8)	AluY|SINE|Alu	31043	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
229957	chr9	126693821	126694080	+	0	NA	intron (NM_001174146, intron 6 of 7)	(GGCTAG)n|Simple_repeat|Simple_repeat	80022	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
194099	chr6	31941221	31941980	+	0	NA	non-coding (NR_104191, exon 1 of 3)	non-coding (NR_104191, exon 1 of 3)	124	NR_104191	102060414		NR_104191	ENSG00000281756	C2-AS1	-	C2 antisense RNA 1	ncRNA
8722	chr1	42529501	42529970	+	0	NA	intron (NM_001355227, intron 6 of 18)	intron (NM_001355227, intron 6 of 18)	-3285	NM_001080850	728621		NM_001080850	ENSG00000186409	CCDC30	PFD6L|PFDN6L	coiled-coil domain containing 30	protein-coding
93112	chr17	17687971	17688130	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	6592	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
7680	chr1	35806351	35806450	+	0	NA	Intergenic	MIRb|SINE|MIR	-1236	NR_146062	192670		NM_017629	ENSG00000134698	AGO4	EIF2C4	argonaute RISC component 4	protein-coding
119980	chr19	41905051	41905580	+	0	NA	intron (NM_004706, intron 24 of 28)	intron (NM_004706, intron 24 of 28)	20872	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
90007	chr16	89883151	89884280	+	0	NA	intron (NM_014972, intron 2 of 17)	intron (NM_014972, intron 2 of 17)	10123	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
39365	chr11	59614871	59616820	+	0	NA	promoter-TSS (NM_002556)	promoter-TSS (NM_002556)	-71	NM_002556	5007		NM_002556	ENSG00000110048	OSBP	OSBP1	oxysterol binding protein	protein-coding
88884	chr16	87717851	87718200	+	0	NA	intron (NM_001351937, intron 7 of 11)	intron (NM_001351937, intron 7 of 11)	47961	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
150662	chr21	43428921	43429580	+	0	NA	Intergenic	Intergenic	-2119	NM_001320643	102724428		NM_001320643	ENSG00000275993	LOC102724428	SIK|SIK-1|SIK1|SIK1B|SNF1LK	salt inducible kinase 1B (putative)	protein-coding
42957	chr11	73649351	73649450	+	0	NA	intron (NM_001130036, intron 1 of 5)	L2c|LINE|L2	487	NM_001130036	58473		NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding
203436	chr7	354121	354380	+	0	NA	Intergenic	Intergenic	-25175	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
136952	chr2	190358421	190358680	+	0	NA	intron (NM_001128928, intron 2 of 6)	intron (NM_001128928, intron 2 of 6)	14961	NM_001128928	3628		NM_002194	ENSG00000151689	INPP1	-	inositol polyphosphate-1-phosphatase	protein-coding
199206	chr6	111789601	111790800	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-30283	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
21347	chr1	204685321	204685580	+	0	NA	5' UTR (NM_006338, exon 1 of 3)	5' UTR (NM_006338, exon 1 of 3)	288	NM_006338	10446		NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
102749	chr17	76265801	76266860	+	0	NA	intron (NM_182565, intron 2 of 2)	intron (NM_182565, intron 2 of 2)	982	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
229607	chr9	123866621	123867180	+	0	NA	intron (NR_148208, intron 2 of 20)	MIRb|SINE|MIR	63226	NM_001352968	57706		NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
232747	chr9	136658071	136658530	+	0	NA	promoter-TSS (NR_046367)	promoter-TSS (NR_046367)	-556	NR_046367	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
186127	chr5	134149101	134150380	+	0	NA	3' UTR (NM_170679, exon 6 of 6)	3' UTR (NM_170679, exon 6 of 6)	26122	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
113268	chr19	8516421	8516700	+	0	NA	Intergenic	AluJb|SINE|Alu	-2393	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
194142	chr6	32004821	32005480	+	0	NA	promoter-TSS (NR_040090)	promoter-TSS (NR_040090)	-486	NR_040090	1590		NR_040090	ENSG00000290788	CYP21A1P	CYP21A|CYP21P|P450c21A	cytochrome P450 family 21 subfamily A member 1, pseudogene	pseudo
41403	chr11	66019821	66020230	+	0	NA	intron (NM_053054, intron 9 of 11)	intron (NM_053054, intron 9 of 11)	6454	NM_053054	117144		NM_053054	ENSG00000175294	CATSPER1	CATSPER|SPGF7	cation channel sperm associated 1	protein-coding
15970	chr1	151905021	151906450	+	0	NA	intron (NM_053055, intron 1 of 5)	LTR76|LTR|ERV1	3776	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
184965	chr5	113336971	113337200	+	0	NA	intron (NM_001085377, intron 3 of 18)	LTR41C|LTR|ERVL	-42147	NM_002387	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
173575	chr4	10115221	10119000	+	0	NA	promoter-TSS (NM_005112)	promoter-TSS (NM_005112)	-311	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
161818	chr3	45590651	45591200	+	0	NA	Intergenic	MER52A|LTR|ERV1	-3826	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
16191	chr1	153804271	153804500	+	0	NA	TTS (NM_020699)	TTS (NM_020699)	10438	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
216628	chr8	22101671	22102350	+	0	NA	intron (NM_022749, intron 14 of 16)	intron (NM_022749, intron 14 of 16)	7409	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
99560	chr17	50422951	50423200	+	0	NA	Intergenic	L1MB3|LINE|L1	-3083	NM_001288968	80221		NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
87053	chr16	68310201	68312000	+	0	NA	promoter-TSS (NR_147057)	promoter-TSS (NR_147057)	-14	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
237792	chrX	129823121	129823580	+	0	NA	intron (NM_016032, intron 5 of 10)	intron (NM_016032, intron 5 of 10)	20249	NM_001008222	51114		NM_016032	ENSG00000188706	ZDHHC9	CGI89|CXorf11|DHHC9|MMSA1|MRXSR|MRXSZ|ZDHHC10|ZNF379|ZNF380	zinc finger DHHC-type palmitoyltransferase 9	protein-coding
157961	chr22	49812071	49812230	+	0	NA	intron (NM_001304808, intron 2 of 12)	Alu|SINE|Alu	12181	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
203897	chr7	1493721	1494230	+	0	NA	intron (NM_001080453, intron 14 of 47)	intron (NM_001080453, intron 14 of 47)	10414	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
42435	chr11	69293551	69294550	+	0	NA	promoter-TSS (NM_001300924)	promoter-TSS (NM_001300924)	-105	NM_001293294	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
133899	chr2	130158051	130158780	+	0	NA	intron (NM_001171083, intron 8 of 16)	AluSx|SINE|Alu	-13303	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
126581	chr2	28759321	28759900	+	0	NA	intron (NM_206876, intron 2 of 8)	Tigger3b|DNA|TcMar-Tigger	7780	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
106057	chr18	9090901	9092080	+	0	NA	Intergenic	Intergenic	-11209	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
179131	chr4	169015751	169016950	+	0	NA	Intergenic	Intergenic	-6095	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
146275	chr20	49061101	49061500	+	0	NA	intron (NM_001362762, intron 2 of 24)	AluY|SINE|Alu	14988	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
16898	chr1	155866901	155867300	+	0	NA	intron (NM_152280, intron 1 of 3)	AluSz|SINE|Alu	7533	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
154153	chr22	31276351	31277130	+	0	NA	intron (NM_005569, intron 15 of 15)	CpG	15748	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
236059	chrX	56368971	56369130	+	0	NA	Intergenic	Intergenic	135892	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
168888	chr3	152312921	152313880	+	0	NA	intron (NR_164857, intron 3 of 10)	MIRb|SINE|MIR	14386	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
82250	chr16	15090801	15091200	+	0	NA	intron (NM_018427, intron 3 of 17)	MER20|DNA|hAT-Charlie	3272	NM_018427	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
147960	chr20	62971121	62971580	+	0	NA	Intergenic	Intergenic	18641	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
127138	chr2	37666971	37667680	+	0	NA	intron (NM_001371569, intron 1 of 1)	L2c|LINE|L2	4317	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
23116	chr1	226686201	226686750	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-11407	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
94907	chr17	31832851	31833350	+	0	NA	Intergenic	LTR12_|LTR|ERV1	25862	NM_001330176	55352		NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
165803	chr3	105811401	105811600	+	0	NA	intron (NM_001321811, intron 3 of 16)	L1MD2|LINE|L1	56091	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
118324	chr19	35547151	35547250	+	0	NA	exon (NM_001242597, exon 5 of 6)	exon (NM_001242597, exon 5 of 6)	-1171	NR_038396	100506469		NR_038396	ENSG00000236144	TMEM147-AS1	-	TMEM147 antisense RNA 1	ncRNA
34277	chr10	131905671	131905830	+	0	NA	intron (NR_033191, intron 2 of 9)	MIR|SINE|MIR	4742	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
212175	chr7	116955251	116955550	+	0	NA	intron (NR_002329, intron 3 of 4)	MSTD|LTR|ERVL-MaLR	-1066	NR_002330	93653		NR_002330	ENSG00000227199	ST7-AS1	ST7AS1|ST7OT1	ST7 antisense RNA 1	ncRNA
99595	chr17	50534171	50534850	+	0	NA	intron (NM_017957, intron 1 of 9)	intron (NM_017957, intron 1 of 9)	1775	NM_017957	55040		NM_017957	ENSG00000049283	EPN3	-	epsin 3	protein-coding
81527	chr16	9092301	9093530	+	0	NA	intron (NM_014117, intron 1 of 3)	(TTCT)n|Simple_repeat|Simple_repeat	1271	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
201371	chr6	144820221	144820480	+	0	NA	intron (NM_001375323, intron 15 of 24)	intron (NM_001375323, intron 15 of 24)	237202	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
111249	chr19	3524451	3524880	+	0	NA	intron (NM_001136198, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	1709	NM_001136198	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
68271	chr14	77046721	77046980	+	0	NA	intron (NR_110554, intron 1 of 3)	MIRb|SINE|MIR	5801	NR_110554	283575		NR_110554	ENSG00000246548	LINC02288	-	long intergenic non-protein coding RNA 2288	ncRNA
35782	chr11	2168101	2168930	+	0	NA	exon (NM_199293, exon 4 of 14)	exon (NM_199293, exon 4 of 14)	3300	NM_199293	7054		NM_000360	ENSG00000180176	TH	DYT14|DYT5b|TYH	tyrosine hydroxylase	protein-coding
11753	chr1	92310051	92310450	+	0	NA	intron (NM_024813, intron 6 of 12)	intron (NM_024813, intron 6 of 12)	11191	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
19371	chr1	173914301	173914500	+	0	NA	intron (NM_001365052, intron 3 of 7)	intron (NM_001365052, intron 3 of 7)	2927	NM_000488	462		NM_000488	ENSG00000117601	SERPINC1	AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7	serpin family C member 1	protein-coding
205282	chr7	8436871	8437130	+	0	NA	intron (NM_152745, intron 2 of 2)	intron (NM_152745, intron 2 of 2)	3391	NM_152745	30010		NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
235528	chrX	47225751	47226180	+	0	NA	exon (NM_001170460, exon 8 of 16)	exon (NM_001170460, exon 8 of 16)	2947	NM_001170460	5127		NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
52881	chr12	57192571	57192930	+	0	NA	intron (NM_002332, intron 44 of 88)	intron (NM_002332, intron 44 of 88)	-1754	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
208455	chr7	66975121	66975380	+	0	NA	Intergenic	Intergenic	20336	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
51316	chr12	51320801	51321650	+	0	NA	intron (NM_001290007, intron 1 of 12)	MIRc|SINE|MIR	2949	NM_001290009	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
201658	chr6	149492001	149492400	+	0	NA	Intergenic	Intergenic	-7186	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
65251	chr14	49900851	49900950	+	0	NA	Intergenic	AluSx|SINE|Alu	7818	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
61259	chr13	50070121	50070600	+	0	NA	intron (NR_152568, intron 1 of 3)	intron (NR_152568, intron 1 of 3)	11681	NR_152568	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
205913	chr7	25565901	25566180	+	0	NA	Intergenic	Intergenic	97100	NR_157819	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
19902	chr1	183967821	183968480	+	0	NA	intron (NM_015101, intron 5 of 11)	intron (NM_015101, intron 5 of 11)	69578	NM_015101	23127		NM_015101	ENSG00000198756	COLGALT2	C1orf17|ColGalT 2|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
107576	chr18	48838721	48839780	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	103557	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
58045	chr12	124464201	124464550	+	0	NA	intron (NM_001077261, intron 7 of 47)	intron (NM_001077261, intron 7 of 47)	103237	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
166422	chr3	113741871	113742530	+	0	NA	intron (NM_025146, intron 1 of 4)	intron (NM_025146, intron 1 of 4)	4049	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
202724	chr6	158879021	158879680	+	0	NA	intron (NR_160977, intron 2 of 3)	LTR8|LTR|ERV1	-9127	NR_160979	100130967		NM_001195032	ENSG00000203711	LINC02901	C6orf99	long intergenic non-protein coding RNA 2901	ncRNA
73507	chr15	43769551	43770780	+	0	NA	intron (NM_005313, intron 10 of 12)	intron (NM_005313, intron 10 of 12)	6801	NM_025165	80237		NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
193625	chr6	30770621	30770880	+	0	NA	intron (NR_138037, intron 1 of 3)	MIR3|SINE|MIR	3925	NR_138037	105375013		NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20	ncRNA
52188	chr12	54330651	54331580	+	0	NA	intron (NM_001271734, intron 1 of 7)	L3b|LINE|CR1	5984	NM_016057	22818		NM_016057	ENSG00000111481	COPZ1	CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP	COPI coat complex subunit zeta 1	protein-coding
43806	chr11	86503771	86504530	+	0	NA	intron (NR_147831, intron 4 of 14)	intron (NR_147831, intron 4 of 14)	129263	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
72718	chr15	38669951	38671180	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-26033	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
1484	chr1	2749071	2749430	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	51618	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
54591	chr12	92461771	92462880	+	0	NA	Intergenic	MIR|SINE|MIR	-4354	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
76883	chr15	77983071	77983230	+	0	NA	Intergenic	AluSx|SINE|Alu	11075	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
633	chr1	1335721	1335980	+	0	NA	TTS (NM_152228)	TTS (NM_152228)	3858	NR_106866	102466740		NR_106866	ENSG00000284372	MIR6808	hsa-mir-6808	microRNA 6808	ncRNA
24332	chr1	239386471	239386980	+	0	NA	non-coding (NR_164748, exon 1 of 9)	non-coding (NR_164748, exon 1 of 9)	157	NM_001375982	1131		NM_000740	ENSG00000133019	CHRM3	EGBRS|HM3|PBS|m3AChR	cholinergic receptor muscarinic 3	protein-coding
230448	chr9	128167601	128168000	+	0	NA	intron (NM_001257975, intron 15 of 17)	intron (NM_001257975, intron 15 of 17)	7535	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
18950	chr1	168535321	168536350	+	0	NA	Intergenic	Intergenic	8162	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
224920	chr9	32579351	32580050	+	0	NA	Intergenic	L1MC5|LINE|L1	-6516	NM_001199987	4712		NM_002493	ENSG00000165264	NDUFB6	B17|CI	NADH:ubiquinone oxidoreductase subunit B6	protein-coding
5981	chr1	26959151	26959250	+	0	NA	intron (NM_152365, intron 1 of 3)	intron (NM_152365, intron 1 of 3)	1268	NM_152365	126695		NM_152365	ENSG00000175707	KDF1	C1orf172|ECTD12	keratinocyte differentiation factor 1	protein-coding
77529	chr15	84718351	84718830	+	0	NA	Intergenic	L2b|LINE|L2	-2130	NM_001271920	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
201908	chr6	151374701	151375680	+	0	NA	intron (NM_020861, intron 1 of 2)	L1MD1|LINE|L1	16369	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
20180	chr1	193043851	193043950	+	0	NA	intron (NM_001350842, intron 3 of 11)	MER77B|LTR|ERVL	13515	NR_135615	107397392		NR_135615	ENSG00000238754	SCARNA18B	-	small Cajal body-specific RNA 18B	ncRNA
210179	chr7	98641671	98642130	+	0	NA	Intergenic	Intergenic	24615	NM_002523	4885		NM_002523	ENSG00000106236	NPTX2	NARP|NP-II|NP2	neuronal pentraxin 2	protein-coding
125067	chr2	9629801	9631650	+	0	NA	intron (NM_006826, intron 1 of 5)	CpG-15747	272	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
135984	chr2	172127321	172127730	+	0	NA	Intergenic	LTR41|LTR|ERVL	24519	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
149745	chr21	34517651	34517750	+	0	NA	3' UTR (NM_004414, exon 4 of 4)	3' UTR (NM_004414, exon 4 of 4)	-5490	NM_000219	3753		NM_000219	ENSG00000180509	KCNE1	ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK	potassium voltage-gated channel subfamily E regulatory subunit 1	protein-coding
111027	chr19	3069421	3069700	+	0	NA	Intergenic	AluY|SINE|Alu	-4846	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
236353	chrX	70436401	70436980	+	0	NA	Intergenic	Intergenic	-8145	NM_021120	1741		NM_020730	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|PPP1R82|SAP102|XLID90|XLMR	discs large MAGUK scaffold protein 3	protein-coding
202623	chr6	158744251	158744550	+	0	NA	intron (NM_001318745, intron 8 of 14)	AluY|SINE|Alu	20353	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
36170	chr11	3163171	3163530	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	1960	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
138758	chr2	215811451	215811830	+	0	NA	intron (NR_037195, intron 1 of 9)	AluJr|SINE|Alu	31896	NR_037195	646324		NR_037195	ENSG00000235770	LINC00607	-	long intergenic non-protein coding RNA 607	ncRNA
194393	chr6	32997771	32997930	+	0	NA	Intergenic	L1MC5a|LINE|L1	11741	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
4148	chr1	19346451	19346880	+	0	NA	intron (NM_001206540, intron 6 of 9)	L3|LINE|CR1	34339	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
122272	chr19	49061401	49061600	+	0	NA	exon (NM_006179, exon 2 of 2)	exon (NM_006179, exon 2 of 2)	2367	NM_006179	4909		NM_006179	ENSG00000225950	NTF4	GLC10|GLC1O|NT-4|NT-4/5|NT-5|NT4|NT5|NTF5	neurotrophin 4	protein-coding
234770	chrX	23788501	23788930	+	0	NA	Intergenic	Intergenic	5557	NM_002970	6303		NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
108271	chr18	63273401	63273800	+	0	NA	intron (NM_000633, intron 2 of 2)	MIRc|SINE|MIR	46169	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
52723	chr12	56600851	56600950	+	0	NA	intron (NM_001351156, intron 24 of 30)	intron (NM_001351156, intron 24 of 30)	29426	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
218349	chr8	42927751	42928050	+	0	NA	intron (NM_032410, intron 3 of 21)	AluSx1|SINE|Alu	30922	NM_032410	84376		NM_032410	ENSG00000168172	HOOK3	HK3	hook microtubule tethering protein 3	protein-coding
31999	chr10	100970201	100971150	+	0	NA	Intergenic	Intergenic	-1854	NM_001203244	57715		NM_017893	ENSG00000095539	SEMA4G	-	semaphorin 4G	protein-coding
35991	chr11	2882721	2883280	+	0	NA	TTS (NM_001122630)	TTS (NM_001122630)	2765	NM_000076	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
53147	chr12	57893921	57894180	+	0	NA	non-coding (NR_148947, exon 1 of 4)	non-coding (NR_148947, exon 1 of 4)	2432	NR_148947	283387		NR_148947	ENSG00000245651	LOC283387	-	uncharacterized LOC283387	ncRNA
67394	chr14	69787821	69789000	+	0	NA	intron (NM_003049, intron 1 of 4)	L1MB7|LINE|L1	8831	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
131846	chr2	98683651	98683980	+	0	NA	intron (NM_012214, intron 2 of 15)	intron (NM_012214, intron 2 of 15)	-20342	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
147648	chr20	62215901	62216300	+	0	NA	exon (NM_007232, exon 3 of 3)	exon (NM_007232, exon 3 of 3)	4178	NM_007232	11255		NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
225264	chr9	34374421	34374680	+	0	NA	intron (NM_020702, intron 1 of 1)	intron (NM_020702, intron 1 of 1)	2348	NM_020702	57462		NM_020702	ENSG00000164976	MYORG	IBGC7|KIAA1161|NET37	myogenesis regulating glycosidase (putative)	protein-coding
115502	chr19	15412871	15413450	+	0	NA	intron (NM_014371, intron 1 of 13)	intron (NM_014371, intron 1 of 13)	5828	NM_014371	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
197018	chr6	53327121	53327580	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	10267	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
211224	chr7	102635871	102636030	+	0	NA	TTS (NM_032959)	TTS (NM_032959)	6841	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
186292	chr5	134559171	134559850	+	0	NA	intron (NM_001289985, intron 4 of 11)	intron (NM_001289985, intron 4 of 11)	33402	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
94336	chr17	28848671	28849480	+	0	NA	Intergenic	AluY|SINE|Alu	-5941	NM_001317985	26284		NM_005702	ENSG00000132591	ERAL1	CEGA|ERA|ERA-W|ERAL1A|ERAL1B|H-ERA|HERA-A|HERA-B|PRLTS6	Era like 12S mitochondrial rRNA chaperone 1	protein-coding
76721	chr15	76060401	76060930	+	0	NA	intron (NM_152335, intron 1 of 10)	intron (NM_152335, intron 1 of 10)	680	NM_152335	123591		NM_152335	ENSG00000169758	TMEM266	C15orf27|HVRP1|HsHVRP1|hTMEM266	transmembrane protein 266	protein-coding
221095	chr8	117522321	117523050	+	0	NA	intron (NM_080651, intron 1 of 3)	intron (NM_080651, intron 1 of 3)	1972	NM_080651	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
54262	chr12	88033751	88034450	+	0	NA	Intergenic	Intergenic	-1436	NM_001009894	91298		NM_001009894	ENSG00000133641	RLIG1	C12orf29|Rnl	RNA 5'-phosphate and 3'-OH ligase 1	protein-coding
148474	chr20	64047201	64047400	+	0	NA	TTS (NM_018419)	TTS (NM_018419)	2339	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
153216	chr22	23915201	23915780	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-16560	NR_038911	284889		NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA
113296	chr19	8558671	8558830	+	0	NA	intron (NM_012335, intron 1 of 27)	L2b|LINE|L2	18692	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
176830	chr4	102563001	102563200	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-60614	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
100745	chr17	63940751	63940850	+	0	NA	exon (NM_000334, exon 24 of 24)	exon (NM_000334, exon 24 of 24)	-8469	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
72386	chr15	31375301	31376200	+	0	NA	3' UTR (NM_015995, exon 2 of 2)	3' UTR (NM_015995, exon 2 of 2)	48915	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
8371	chr1	40342321	40342650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-25199	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
203879	chr7	1477001	1477550	+	0	NA	intron (NM_001080453, intron 35 of 47)	intron (NM_001080453, intron 35 of 47)	-17805	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
12153	chr1	100247921	100248200	+	0	NA	intron (NM_001918, intron 1 of 10)	AluSz|SINE|Alu	1774	NM_001918	1629		NM_001918	ENSG00000137992	DBT	BCATE2|BCKAD-E2|BCKADE2|BCKDH-E2|BCOADC-E2|E2|E2B	dihydrolipoamide branched chain transacylase E2	protein-coding
133877	chr2	129878801	129879000	+	0	NA	Intergenic	MER47A|DNA|TcMar-Tigger	-1409	NR_149127	105373615		NR_149127	ENSG00000229536	LINC02572	-	long intergenic non-protein coding RNA 2572	ncRNA
210222	chr7	99327321	99327780	+	0	NA	intron (NM_001190996, intron 1 of 9)	AluJo|SINE|Alu	1652	NM_006409	10552		NM_006409	ENSG00000241685	ARPC1A	Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L	actin related protein 2/3 complex subunit 1A	protein-coding
71811	chr15	21775601	21775850	+	0	NA	Intergenic	AluSx|SINE|Alu	-39726	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
206817	chr7	37116001	37116400	+	0	NA	intron (NM_014800, intron 14 of 21)	intron (NM_014800, intron 14 of 21)	118404	NR_104120	100861514		NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
75819	chr15	69398501	69398780	+	0	NA	intron (NR_132971, intron 1 of 1)	intron (NR_132971, intron 1 of 1)	-15709	NR_160295	9493		NM_004856	ENSG00000137807	KIF23	CDA3|CDAIII|CDAN3|CDAN3A|CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
89977	chr16	89831901	89832300	+	0	NA	intron (NM_032451, intron 1 of 14)	intron (NM_032451, intron 1 of 14)	3625	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
107772	chr18	51028151	51028780	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1748	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
136819	chr2	182030551	182030650	+	0	NA	intron (NM_001261425, intron 2 of 5)	L1PA2|LINE|L1	44747	NR_048566	151242		NM_001080545	ENSG00000150722	PPP1R1C	IPP5	protein phosphatase 1 regulatory inhibitor subunit 1C	protein-coding
35586	chr11	1729051	1729580	+	0	NA	Intergenic	L1ME3B|LINE|L1	21280	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
162344	chr3	47790421	47791150	+	0	NA	Intergenic	AluY|SINE|Alu	-8892	NM_003074	6599		NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|HYC5|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
50273	chr12	46355451	46355930	+	0	NA	Intergenic	AluY|SINE|Alu	17083	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
26488	chr10	17737321	17737600	+	0	NA	Intergenic	Intergenic	-14741	NM_001098844	653567		NM_001013629	ENSG00000148483	TMEM236	FAM23A|FAM23B|bA162I21.2|bA16O1.2	transmembrane protein 236	protein-coding
237568	chrX	120833201	120833400	+	0	NA	Intergenic	L1PA8|LINE|L1	42625	NM_001145718	643311		NM_001145718	ENSG00000236446	CT47B1	CT47.13|CT47A13	cancer/testis antigen family 47 member B1	protein-coding
77370	chr15	82824901	82825300	+	0	NA	intron (NM_001080435, intron 6 of 9)	AluJr|SINE|Alu	15472	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
93951	chr17	21404601	21404800	+	0	NA	intron (NM_021012, intron 1 of 2)	intron (NM_021012, intron 1 of 2)	28343	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
88419	chr16	84703871	84704030	+	0	NA	intron (NM_005153, intron 1 of 13)	intron (NM_005153, intron 1 of 13)	3950	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
127027	chr2	37082621	37083150	+	0	NA	intron (NM_019024, intron 2 of 35)	MER9a2|LTR|ERVK	1487	NM_019024	54497		NM_019024	ENSG00000008869	HEATR5B	p200|p200a	HEAT repeat containing 5B	protein-coding
44397	chr11	103101351	103101650	+	0	NA	Intergenic	Intergenic	-7926	NM_001377	79659		NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding
62377	chr13	99242221	99242680	+	0	NA	intron (NM_177967, intron 2 of 6)	SVA_D|Retroposon|SVA	15978	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
164524	chr3	63910451	63911300	+	0	NA	TTS (NR_148359)	TTS (NR_148359)	897	NR_148359	100861563		NR_148359	ENSG00000280620	SCAANT1	ATXN7-AS1	SCA7/ATXN7 antisense RNA 1	ncRNA
32015	chr10	101000871	101001500	+	0	NA	intron (NM_001318100, intron 1 of 4)	intron (NM_001318100, intron 1 of 4)	-1312	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
216386	chr8	17922321	17923600	+	0	NA	promoter-TSS (NM_001352653)	promoter-TSS (NM_001352653)	-28	NM_001352645	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
198892	chr6	109485971	109486330	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	-2913	NM_001164313	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
51788	chr12	53366271	53366850	+	0	NA	Intergenic	AluYk2|SINE|Alu	-13616	NM_001251825	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
50086	chr12	44836801	44837000	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	38761	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
71118	chr14	104930701	104930900	+	0	NA	exon (NM_138790, exon 7 of 11)	exon (NM_138790, exon 7 of 11)	5921	NM_001308174	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
131391	chr2	96260551	96261830	+	0	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	4807	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
27078	chr10	27241601	27242500	+	0	NA	promoter-TSS (NM_001352576)	promoter-TSS (NM_001352576)	61	NM_001042473	91452		NM_145698	ENSG00000107897	ACBD5	RDLKD	acyl-CoA binding domain containing 5	protein-coding
209863	chr7	90401201	90401530	+	0	NA	Intergenic	L1MA4|LINE|L1	-2096	NM_012129	9069		NM_012129	ENSG00000157224	CLDN12	-	claudin 12	protein-coding
180666	chr5	18741151	18741450	+	0	NA	Intergenic	Intergenic	934026	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
213450	chr7	138750071	138750630	+	0	NA	intron (NM_130840, intron 10 of 20)	AluJo|SINE|Alu	23687	NM_130841	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
130208	chr2	84632121	84632380	+	0	NA	intron (NM_001370, intron 29 of 76)	Charlie2b|DNA|hAT-Charlie	115752	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
63392	chr13	114066951	114067100	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	10930	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171826	chr4	676151	677130	+	0	NA	intron (NM_001363650, intron 2 of 7)	intron (NM_001363650, intron 2 of 7)	-1282	NM_002477	4636		NM_002477	ENSG00000215375	MYL5	MYLC2	myosin light chain 5	protein-coding
227224	chr9	88923001	88923200	+	0	NA	Intergenic	Intergenic	-67763	NM_001001938	1903		NM_005226	ENSG00000213694	S1PR3	C9orf108|C9orf47|EDG-3|EDG3|LPB3|S1P3|bA791O21.3	sphingosine-1-phosphate receptor 3	protein-coding
49270	chr12	19497201	19497600	+	0	NA	intron (NM_153207, intron 4 of 7)	AluSq|SINE|Alu	56801	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
194077	chr6	31878271	31879030	+	0	NA	promoter-TSS (NM_001178045).5	promoter-TSS (NM_001178045).5	347	NM_025257	80736		NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1	solute carrier family 44 member 4	protein-coding
51123	chr12	50100571	50100730	+	0	NA	TTS (NM_003076)	TTS (NM_003076)	-3358	NM_001257199	2819		NM_005276	ENSG00000167588	GPD1	GPD-C|GPDH-C|HTGTI	glycerol-3-phosphate dehydrogenase 1	protein-coding
62668	chr13	102595801	102598200	+	0	NA	promoter-TSS (NM_001330588)	promoter-TSS (NM_001330588)	14	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
115706	chr19	16211621	16211880	+	0	NA	intron (NM_001130524, intron 6 of 12)	AluSx|SINE|Alu	13839	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
181563	chr5	43140151	43141180	+	0	NA	intron (NM_003432, intron 4 of 7)	intron (NM_003432, intron 4 of 7)	19100	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
176054	chr4	82423321	82423930	+	0	NA	non-coding (NR_003249, exon 9 of 9)	non-coding (NR_003249, exon 9 of 9)	6600	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
2942	chr1	11865371	11865880	+	0	NA	Intergenic	Intergenic	-6680	NM_002521	4879		NM_002521	ENSG00000120937	NPPB	BNP|Iso-ANP	natriuretic peptide B	protein-coding
122129	chr19	48837071	48837780	+	0	NA	promoter-TSS (NM_016246)	promoter-TSS (NM_016246)	-934	NM_016246	51171		NM_016246	ENSG00000087076	HSD17B14	DHRS10|SDR47C1|retSDR3	hydroxysteroid 17-beta dehydrogenase 14	protein-coding
30478	chr10	79243501	79244250	+	0	NA	intron (NM_020338, intron 7 of 24)	CpG	-103594	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
54986	chr12	96342571	96342730	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	57789	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
15734	chr1	151060301	151061300	+	0	NA	intron (NM_006818, intron 1 of 1)	intron (NM_006818, intron 1 of 1)	403	NM_006818	10962		NM_006818	ENSG00000213190	MLLT11	AF1Q	MLLT11 transcription factor 7 cofactor	protein-coding
25647	chr10	8267751	8268130	+	0	NA	intron (NR_108058, intron 1 of 4)	AluSz6|SINE|Alu	365	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
186038	chr5	134036121	134036580	+	0	NA	Intergenic	L1MC4|LINE|L1	-31375	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
217095	chr8	24415051	24415300	+	0	NA	intron (NR_125808, intron 1 of 5)	intron (NR_125808, intron 1 of 5)	-25851	NM_003817	8756		NM_003817	ENSG00000069206	ADAM7	ADAM 7|ADAM-7|EAPI|GP-83|GP83	ADAM metallopeptidase domain 7	protein-coding
156268	chr22	40418421	40419400	+	0	NA	exon (NM_001282662, exon 12 of 15)	exon (NM_001282662, exon 12 of 15)	44530	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
123487	chr19	54188911	54190300	+	0	NA	promoter-TSS (NM_024075)	promoter-TSS (NM_024075)	-25	NM_001146056	79143		NM_024298	ENSG00000125505	MBOAT7	BB1|LENG4|LPIAT|LPIAT1|LPLAT|LPLAT11|LRC4|MBOA7|MRT57|OACT7|hMBOA-7	membrane bound O-acyltransferase domain containing 7	protein-coding
29760	chr10	72226451	72226750	+	0	NA	intron (NM_001242548, intron 2 of 2)	AluJb|SINE|Alu	-9466	NM_001369099	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
7086	chr1	32061901	32062800	+	0	NA	Intergenic	MIRb|SINE|MIR	-9681	NM_001319677	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
238291	chrX	149484021	149484650	+	0	NA	intron (NM_001166550, intron 8 of 8)	AluSc5|SINE|Alu	20971	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
104790	chr17	81722101	81722930	+	0	NA	Intergenic	Intergenic	10231	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
45202	chr11	117814401	117816130	+	0	NA	intron (NM_001367905, intron 1 of 6)	intron (NM_001367905, intron 1 of 6)	2249	NM_001367905	57453		NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
144264	chr20	34549351	34549780	+	0	NA	intron (NM_181509, intron 1 of 4)	MER66A|LTR|ERV1	2721	NM_181509	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
147305	chr20	57693401	57693600	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	-2814	NM_001255976	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
183983	chr5	88833421	88833980	+	0	NA	intron (NM_001364330, intron 2 of 11)	intron (NM_001364330, intron 2 of 11)	-6512	NM_001364341	4208		NM_002397	ENSG00000081189	MEF2C	C5DELq14.3|DEL5q14.3|NEDHSIL	myocyte enhancer factor 2C	protein-coding
180698	chr5	21492801	21493230	+	0	NA	intron (NR_027028, intron 4 of 5).2	intron (NR_027028, intron 4 of 5).2	33535	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
96067	chr17	39596521	39596780	+	0	NA	Intergenic	CpG	11270	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
110947	chr19	2850371	2850530	+	0	NA	intron (NM_001172775, intron 1 of 3)	L2|LINE|L2	8975	NM_152791	148254		NM_152791	ENSG00000186300	ZNF555	-	zinc finger protein 555	protein-coding
211409	chr7	105037421	105037700	+	0	NA	intron (NM_182931, intron 1 of 26)	AluJb|SINE|Alu	23355	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
3852	chr1	16939001	16939200	+	0	NA	exon (NM_014675, exon 12 of 37)	exon (NM_014675, exon 12 of 37)	17169	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
152611	chr22	21413551	21414350	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3421	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
112691	chr19	7063421	7064580	+	0	NA	Intergenic	AluJb|SINE|Alu	-5366	NM_001164425	653657		NM_001164425	ENSG00000182315	MBD3L3	-	methyl-CpG binding domain protein 3 like 3	protein-coding
183212	chr5	76175971	76176500	+	0	NA	intron (NM_014979, intron 2 of 12)	intron (NM_014979, intron 2 of 12)	92852	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
239103	chrY	11048571	11048730	+	0	NA	Intergenic	(TGATGA)n|Simple_repeat|Simple_repeat	1137852	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
23323	chr1	228095251	228095350	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	-1963	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
120125	chr19	42197401	42198000	+	0	NA	TTS (NR_073046)	TTS (NR_073046)	19977	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
29795	chr10	72287201	72287800	+	0	NA	Intergenic	L2a|LINE|L2	13576	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
186974	chr5	139688321	139688980	+	0	NA	Intergenic	Intergenic	13207	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
192040	chr6	16481171	16482180	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	243088	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
142610	chr20	5595401	5595600	+	0	NA	intron (NM_019593, intron 3 of 19)	AluSg|SINE|Alu	15506	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
184300	chr5	96873171	96873730	+	0	NA	Intergenic	Intergenic	-2489	NM_001329229	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
141493	chr2	241107621	241107880	+	0	NA	intron (NM_001252120, intron 17 of 18)	intron (NM_001252120, intron 17 of 18)	-5418	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
116216	chr19	17510251	17511800	+	0	NA	promoter-TSS (NM_012088)	promoter-TSS (NM_012088)	-624	NM_012088	25796		NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
156296	chr22	40518151	40518880	+	0	NA	intron (NM_001282661, intron 3 of 13)	AluY|SINE|Alu	-3285	NR_109965	101927257		NR_109965	ENSG00000232564	MRTFA-AS1	-	MRTFA antisense RNA 1	ncRNA
151763	chr22	17984801	17985000	+	0	NA	intron (NM_015241, intron 1 of 31)	MIR|SINE|MIR	-3939	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
122994	chr19	50838251	50838550	+	0	NA	intron (NR_131205, intron 2 of 2)	intron (NR_131205, intron 2 of 2)	-6877	NM_017509	55554		NM_017509	ENSG00000174562	KLK15	ACO|HSRNASPH	kallikrein related peptidase 15	protein-coding
78608	chr15	93353921	93354000	+	0	NA	Intergenic	AluY|SINE|Alu	147894	NM_001365393								
190873	chr6	2209271	2209600	+	0	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	-33444	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
97114	chr17	42517271	42518700	+	0	NA	intron (NM_001378535, intron 22 of 22)	intron (NM_001378535, intron 22 of 22)	3797	NR_049808	100847046		NR_049808	ENSG00000283929	MIR5010	mir-5010	microRNA 5010	ncRNA
104461	chr17	81107801	81108000	+	0	NA	intron (NM_001385159, intron 7 of 8)	intron (NM_001385159, intron 7 of 8)	10289	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
23475	chr1	228621901	228622570	+	0	NA	promoter-TSS (NR_023363).6	promoter-TSS (NR_023363).6	-670	NR_023374	100169763		NR_023374	ENSG00000199270	RNA5S12	RN5S12	RNA, 5S ribosomal 12	rRNA
79835	chr16	1441071	1441700	+	0	NA	intron (NM_001143980, intron 6 of 16)	intron (NM_001143980, intron 6 of 16)	3104	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
89624	chr16	89318251	89318630	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-2012	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
222144	chr8	132574951	132575050	+	0	NA	intron (NR_135913, intron 10 of 10)	intron (NR_135913, intron 10 of 10)	-13521	NR_026684	93668		NR_026684	ENSG00000253521	HPYR1	HPRG1|LINC00027|NCRNA00027	Helicobacter pylori responsive 1	ncRNA
155921	chr22	39601071	39601650	+	0	NA	intron (NM_001003406, intron 3 of 35)	L2b|LINE|L2	30607	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
166657	chr3	120049971	120050780	+	0	NA	intron (NM_001146156, intron 1 of 10)	MER58A|DNA|hAT-Charlie	34273	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
47449	chr12	3747521	3748230	+	0	NA	intron (NM_032680, intron 1 of 10)	intron (NM_032680, intron 1 of 10)	5234	NM_032680	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
19679	chr1	180981501	180982100	+	0	NA	intron (NM_001286210, intron 5 of 5)	intron (NM_001286210, intron 5 of 5)	-26913	NR_145481	103344928		NR_145481	ENSG00000232586	KIAA1614-AS1	-	KIAA1614 antisense RNA 1	ncRNA
74551	chr15	60520671	60521430	+	0	NA	intron (NR_120339, intron 4 of 5)	intron (NR_120339, intron 4 of 5)	41872	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
128820	chr2	62801871	62802300	+	0	NA	intron (NM_001142616, intron 5 of 22)	intron (NM_001142616, intron 5 of 22)	95188	NM_001354217	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
237596	chrX	123879071	123879750	+	0	NA	intron (NM_001378590, intron 1 of 6)	AluY|SINE|Alu	18960	NM_001378590	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
55616	chr12	106960771	106961130	+	0	NA	intron (NM_001319663, intron 3 of 4)	intron (NM_001319663, intron 3 of 4)	4165	NM_001319662	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
175082	chr4	54098821	54099250	+	0	NA	Intergenic	Intergenic	-1128	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
166907	chr3	124886171	124886330	+	0	NA	intron (NM_001354766, intron 1 of 13)	CpG	1115	NM_002213	3693		NM_002213	ENSG00000082781	ITGB5	-	integrin subunit beta 5	protein-coding
83543	chr16	27972551	27973000	+	0	NA	intron (NM_001109763, intron 1 of 6)	MER5B|DNA|hAT-Charlie	-84618	NM_144675	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
66345	chr14	61447221	61448100	+	0	NA	intron (NM_006255, intron 4 of 13)	L1MC|LINE|L1	122534	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
151664	chr22	17086801	17087230	+	0	NA	intron (NM_014339, intron 1 of 12)	intron (NM_014339, intron 1 of 12)	2015	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
53010	chr12	57525621	57526080	+	0	NA	exon (NM_052897, exon 6 of 13)	exon (NM_052897, exon 6 of 13)	3026	NM_052897	114785		NM_052897	ENSG00000166987	MBD6	-	methyl-CpG binding domain protein 6	protein-coding
127249	chr2	38692521	38692780	+	0	NA	intron (NM_138801, intron 4 of 6)	L2b|LINE|L2	26536	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
1869	chr1	6420821	6421280	+	0	NA	Intergenic	Intergenic	-1131	NM_019089	54626		NM_019089	ENSG00000069812	HES2	bHLHb40	hes family bHLH transcription factor 2	protein-coding
111138	chr19	3279321	3280050	+	0	NA	intron (NM_021938, intron 5 of 12)	intron (NM_021938, intron 5 of 12)	54407	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
210197	chr7	98989071	98990030	+	0	NA	intron (NM_001375524, intron 63 of 72)	intron (NM_001375524, intron 63 of 72)	-23615	NR_110102	101927550		NR_110102		LOC101927550	-	uncharacterized LOC101927550	ncRNA
145920	chr20	46008471	46008830	+	0	NA	promoter-TSS (NM_004994)	promoter-TSS (NM_004994)	-258	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
113029	chr19	7937271	7937630	+	0	NA	intron (NM_006351, intron 3 of 12)	MER5A1|DNA|hAT-Charlie	6216	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
87318	chr16	70248701	70249350	+	0	NA	3' UTR (NM_058219, exon 1 of 1)	3' UTR (NM_058219, exon 1 of 1)	2915	NM_058219	118460		NM_058219	ENSG00000223496	EXOSC6	EAP4|MTR3|Mtr3p|hMtr3p|p11	exosome component 6	protein-coding
63022	chr13	112767001	112767400	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	-12469	NR_046661	100874205		NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
226554	chr9	72360121	72360700	+	0	NA	intron (NM_001278243, intron 3 of 6)	intron (NM_001278243, intron 3 of 6)	4146	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
106000	chr18	7896151	7896450	+	0	NA	intron (NM_002845, intron 3 of 30)	intron (NM_002845, intron 3 of 30)	-50575	NM_001378146	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
216501	chr8	20249621	20250080	+	0	NA	exon (NM_001362884, exon 4 of 4)	exon (NM_001362884, exon 4 of 4)	23685	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
133908	chr2	130184651	130185030	+	0	NA	intron (NM_001330282, intron 3 of 3)	intron (NM_001330282, intron 3 of 3)	2578	NM_025029	80097		NM_025029	ENSG00000152082	MZT2B	FAM128B|MOZART2B	mitotic spindle organizing protein 2B	protein-coding
69653	chr14	97970371	97970530	+	0	NA	intron (NR_152748, intron 1 of 2)	intron (NR_152748, intron 1 of 2)	7674	NR_015430	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
232796	chr9	136706321	136706580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6122	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
13380	chr1	113928751	113929900	+	0	NA	promoter-TSS (NM_001369807)	promoter-TSS (NM_001369807)	1	NM_198268	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
119719	chr19	41200351	41200450	+	0	NA	intron (NM_030622, intron 5 of 8)	AluY|SINE|Alu	7181	NM_030622	29785		NM_030622	ENSG00000167600	CYP2S1	CYPIIS1	cytochrome P450 family 2 subfamily S member 1	protein-coding
159799	chr3	16329151	16329250	+	0	NA	intron (NM_015150, intron 7 of 9)	MSTD|LTR|ERVL-MaLR	63988	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
149469	chr21	31728321	31728580	+	0	NA	intron (NM_001145444, intron 1 of 18)	intron (NM_001145444, intron 1 of 18)	3668	NM_001145445	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
70438	chr14	102044521	102045050	+	0	NA	intron (NM_001376, intron 72 of 77)	intron (NM_001376, intron 72 of 77)	42259	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
3382	chr1	15727571	15727730	+	0	NA	exon (NM_015164, exon 9 of 20)	exon (NM_015164, exon 9 of 20)	-8608	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
97535	chr17	44041251	44042180	+	0	NA	intron (NM_001369486, intron 1 of 3)	intron (NM_001369486, intron 1 of 3)	-18564	NM_001304813	84336		NM_032376	ENSG00000091947	TMEM101	-	transmembrane protein 101	protein-coding
86999	chr16	68236701	68237000	+	0	NA	promoter-TSS (NM_024939)	promoter-TSS (NM_024939)	-723	NM_024939	80004		NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
40927	chr11	65250371	65250600	+	0	NA	Intergenic	LTR75|LTR|ERVL	-11477	NM_002689	23649		NM_002689	ENSG00000014138	POLA2	-	DNA polymerase alpha 2, accessory subunit	protein-coding
133658	chr2	127055351	127055450	+	0	NA	intron (NM_139344, intron 11 of 17)	intron (NM_139344, intron 11 of 17)	26665	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
147667	chr20	62291251	62291350	+	0	NA	intron (NM_144498, intron 12 of 13)	intron (NM_144498, intron 12 of 13)	-11596	NM_001281437	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
58931	chr13	19762371	19763300	+	0	NA	intron (NM_001354909, intron 2 of 8)	AluSx3|SINE|Alu	20110	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
81170	chr16	4458971	4460250	+	0	NA	Intergenic	AluJo|SINE|Alu	15015	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
38966	chr11	47546601	47547450	+	0	NA	intron (NM_001376458, intron 1 of 13)	AluSp|SINE|Alu	6107	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
87582	chr16	73036071	73036230	+	0	NA	intron (NM_006885, intron 1 of 9)	(CT)n|Simple_repeat|Simple_repeat	11978	NM_006885	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
18234	chr1	161040451	161040800	+	0	NA	exon (NM_007122, exon 9 of 11)	exon (NM_007122, exon 9 of 11)	-1661	NM_001113206	100131187		NM_001113205	ENSG00000215845	TSTD1	KAT|TST	thiosulfate sulfurtransferase like domain containing 1	protein-coding
19168	chr1	171784071	171785250	+	0	NA	intron (NM_014955, intron 2 of 7)	intron (NM_014955, intron 2 of 7)	3000	NM_014955	51603		NM_014955	ENSG00000010165	METTL13	5630401D24Rik|CGI-01|DFNB26|DFNB26M|DFNM1|EEF1AKNMT|KIAA0859|feat	methyltransferase 13, eEF1A N-terminus and K55	protein-coding
192454	chr6	24908731	24909100	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	1819	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
143473	chr20	31057951	31058650	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-199364	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
27103	chr10	27531271	27531800	+	0	NA	exon (NM_001256410, exon 4 of 8)	exon (NM_001256410, exon 4 of 8)	27231	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
125048	chr2	9612471	9612800	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	18362	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
198725	chr6	108258201	108258730	+	0	NA	intron (NM_001300929, intron 1 of 3)	AluSg|SINE|Alu	2575	NM_001300928	8724		NM_003795	ENSG00000112335	SNX3	Grd19|MCOPS8|SDP3	sorting nexin 3	protein-coding
65537	chr14	51920501	51920900	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-2129	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
19400	chr1	174157171	174157750	+	0	NA	intron (NR_121197, intron 2 of 3)	intron (NR_121197, intron 2 of 3)	1827	NR_121197	102724601		NR_121197	ENSG00000227373	RABGAP1L-DT	-	RABGAP1L divergent transcript	ncRNA
139061	chr2	218847651	218848300	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-11830	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
100469	chr17	61414821	61415080	+	0	NA	Intergenic	MIRb|SINE|MIR	3199	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
230467	chr9	128208701	128209180	+	0	NA	intron (NM_001374269, intron 1 of 21)	L2b|LINE|L2	-4718	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
229650	chr9	124264971	124265130	+	0	NA	intron (NM_001166168, intron 1 of 9)	L1MB5|LINE|L1	-3882	NR_149024	613206		NM_001033016	ENSG00000235204	LOC613206	-	uncharacterized LOC613206	ncRNA
22749	chr1	224373301	224373500	+	0	NA	intron (NM_001277200, intron 4 of 4)	intron (NM_001277200, intron 4 of 4)	16521	NM_014184	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
75443	chr15	65815921	65816180	+	0	NA	Intergenic	Intergenic	-23757	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
106281	chr18	12701221	12701480	+	0	NA	intron (NR_073537, intron 1 of 12)	intron (NR_073537, intron 1 of 12)	1373	NM_024899	79959		NM_024899	ENSG00000101624	CEP76	C18orf9|HsT1705	centrosomal protein 76	protein-coding
117489	chr19	19812371	19812530	+	0	NA	intron (NM_001099269, intron 1 of 3)	intron (NM_001099269, intron 1 of 3)	9300	NM_001099269	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
213922	chr7	142583421	142583680	+	0	NA	intron (NM_001363538, intron 11 of 11)	L1MEc|LINE|L1	-82749	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
129156	chr2	66434151	66434450	+	0	NA	promoter-TSS (NM_002398)	promoter-TSS (NM_002398)	-825	NM_002398	4211		NM_002398	ENSG00000143995	MEIS1	-	Meis homeobox 1	protein-coding
105737	chr18	2734851	2735400	+	0	NA	intron (NM_015295, intron 25 of 47)	L1PA16|LINE|L1	79399	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
235739	chrX	48938601	48939250	+	0	NA	intron (NM_001136157, intron 2 of 8)	intron (NM_001136157, intron 2 of 8)	18682	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
144786	chr20	36634921	36635180	+	0	NA	intron (NM_175077, intron 2 of 7)	intron (NM_175077, intron 2 of 7)	11146	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
44027	chr11	95087601	95088000	+	0	NA	Intergenic	Intergenic	-2046	NM_015036	23052		NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
14804	chr1	146264451	146265200	+	0	NA	Intergenic	MIR|SINE|MIR	-32948	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
37330	chr11	14828571	14828730	+	0	NA	intron (NM_001363569, intron 7 of 15)	L1PA13|LINE|L1	63021	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
19861	chr1	183281551	183282000	+	0	NA	intron (NM_170706, intron 7 of 10)	intron (NM_170706, intron 7 of 10)	23099	NM_170706	23057		NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
203846	chr7	1449301	1449700	+	0	NA	intron (NM_182924, intron 2 of 16)	AluSx3|SINE|Alu	9970	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
205105	chr7	6828771	6829130	+	0	NA	Intergenic	Intergenic	-2675	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
88843	chr16	87517771	87518050	+	0	NA	Intergenic	Intergenic	23723	NR_110943	101928737		NR_110943	ENSG00000288568	ZCCHC14-DT	-	ZCCHC14 divergent transcript	ncRNA
80220	chr16	2176951	2177750	+	0	NA	3' UTR (NM_020764, exon 20 of 20)	3' UTR (NM_020764, exon 20 of 20)	19255	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
119687	chr19	41050271	41050430	+	0	NA	Intergenic	MIR|SINE|MIR	-38101	NM_000766	1553		NM_000766	ENSG00000197838	CYP2A13	CPAD|CYP2A|CYPIIA13	cytochrome P450 family 2 subfamily A member 13	protein-coding
146484	chr20	49814071	49814430	+	0	NA	intron (NR_048540, intron 1 of 11)	MIRb|SINE|MIR	1422	NR_048538	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
229900	chr9	126556501	126556900	+	0	NA	Intergenic	Intergenic	-57228	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
18452	chr1	161539471	161540950	+	0	NA	Intergenic	Intergenic	9608	NM_000569	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
53641	chr12	68225671	68226000	+	0	NA	promoter-TSS (NM_018402)	promoter-TSS (NM_018402)	-25	NM_018402	55801		NM_018402	ENSG00000111536	IL26	AK155|IL-26	interleukin 26	protein-coding
93248	chr17	17936071	17936230	+	0	NA	intron (NM_001082968, intron 1 of 14)	L2c|LINE|L2	36250	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
9806	chr1	53766821	53767280	+	0	NA	non-coding (NR_033142, exon 17 of 17)	non-coding (NR_033142, exon 17 of 17)	-27886	NM_001367484	148979		NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
49750	chr12	31733701	31734280	+	0	NA	Intergenic	LTR8|LTR|ERV1	-4816	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
47813	chr12	6585401	6586080	+	0	NA	intron (NM_001273, intron 25 of 39)	AluSx3|SINE|Alu	-4131	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
82934	chr16	21840421	21840680	+	0	NA	intron (NM_001310148, intron 5 of 7)	intron (NM_001310148, intron 5 of 7)	17107	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
225582	chr9	36102951	36103480	+	0	NA	intron (NM_021111, intron 12 of 20)	intron (NM_021111, intron 12 of 20)	-33321	NR_104638	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
154488	chr22	35650851	35651430	+	0	NA	intron (NM_030641, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	2694	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
127276	chr2	38721551	38721650	+	0	NA	intron (NM_138801, intron 4 of 6)	AluJb|SINE|Alu	29761	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
131436	chr2	96303721	96303980	+	0	NA	intron (NM_014014, intron 2 of 44)	AluSx1|SINE|Alu	1696	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
102465	chr17	75720671	75722250	+	0	NA	promoter-TSS (NM_001005731)	promoter-TSS (NM_001005731)	1	NM_000213	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
36527	chr11	6483051	6483150	+	0	NA	3' UTR (NM_012192, exon 3 of 3)	3' UTR (NM_012192, exon 3 of 3)	1599	NM_012192	26515		NM_012192	ENSG00000132286	TIMM10B	FXC1|TIM10B|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding
15472	chr1	150358321	150359000	+	0	NA	Intergenic	AluSx3|SINE|Alu	-5451	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
158005	chr22	49874371	49874530	+	0	NA	intron (NM_014838, intron 1 of 1)	AluSg4|SINE|Alu	20606	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
213044	chr7	131049871	131050830	+	0	NA	intron (NR_109850, intron 3 of 5)	AluSc|SINE|Alu	56680	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
187611	chr5	142959621	142960330	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-91065	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
57855	chr12	123276101	123276500	+	0	NA	Intergenic	AluY|SINE|Alu	-4060	NR_073007	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
174993	chr4	49710351	49711000	+	0	NA	Intergenic	SAR|Satellite|Satellite	724033	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
48702	chr12	10611921	10612180	+	0	NA	intron (NM_001319985, intron 1 of 4)	intron (NM_001319985, intron 1 of 4)	928	NM_001300739	55110		NM_018048	ENSG00000111196	MAGOHB	MGN2|mago|magoh	mago homolog B, exon junction complex subunit	protein-coding
235865	chrX	51333671	51333830	+	0	NA	intron (NM_001304963, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	928	NM_001304963	170685		NM_153183	ENSG00000122824	NUDT10	APS2|DIPP3-alpha|DIPP3a	nudix hydrolase 10	protein-coding
69334	chr14	93936301	93936980	+	0	NA	intron (NM_016150, intron 7 of 7)	intron (NM_016150, intron 7 of 7)	9296	NM_001207074	90050		NM_138344	ENSG00000140067	FAM181A	C14orf152	family with sequence similarity 181 member A	protein-coding
154615	chr22	36305471	36305730	+	0	NA	intron (NM_002473, intron 17 of 40)	intron (NM_002473, intron 17 of 40)	-18693	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
176440	chr4	89284971	89285730	+	0	NA	intron (NM_198281, intron 1 of 1)	L1PA6|LINE|L1	22450	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
114695	chr19	13127201	13127400	+	0	NA	intron (NM_052876, intron 1 of 5)	AluJr|SINE|Alu	9036	NM_052876	112939		NM_052876	ENSG00000160877	NACC1	BEND8|BTBD14B|BTBD30|NAC-1|NAC1|NECFM	nucleus accumbens associated 1	protein-coding
2718	chr1	10655201	10655780	+	0	NA	intron (NM_017766, intron 9 of 15)	intron (NM_017766, intron 9 of 15)	141156	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
50753	chr12	49015521	49015780	+	0	NA	intron (NM_001206709, intron 1 of 11)	AluSx3|SINE|Alu	3126	NM_001206710	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
128571	chr2	60901421	60901680	+	0	NA	intron (NM_001291746, intron 4 of 9)	intron (NM_001291746, intron 4 of 9)	19976	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133371	chr2	117835671	117836900	+	0	NA	intron (NR_158150, intron 2 of 6)	CpG	2554	NR_158150	107985939		NR_158150		LOC107985939	-	uncharacterized LOC107985939	ncRNA
113247	chr19	8496801	8497000	+	0	NA	intron (NM_032152, intron 4 of 9)	AluYc|SINE|Alu	5740	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
235601	chrX	47644101	47644300	+	0	NA	intron (NM_005229, intron 1 of 5)	intron (NM_005229, intron 1 of 5)	6404	NM_001114123	2002		NM_005229	ENSG00000126767	ELK1	-	ETS transcription factor ELK1	protein-coding
102572	chr17	75866071	75866230	+	0	NA	Intergenic	L1MB3|LINE|L1	-9714	NM_001348170	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
232768	chr9	136675351	136676080	+	0	NA	intron (NM_001012727, intron 3 of 4)	intron (NM_001012727, intron 3 of 4)	5113	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
39875	chr11	62481571	62482130	+	0	NA	intron (NM_024060, intron 5 of 5)	AluYc|SINE|Alu	62817	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
180283	chr5	1827721	1828230	+	0	NA	Intergenic	Intergenic	26568	NM_004553	4726		NM_004553	ENSG00000145494	NDUFS6	CI-13kA|CI-13kD-A|CI13KDA|MC1DN9	NADH:ubiquinone oxidoreductase subunit S6	protein-coding
206311	chr7	30177751	30178050	+	0	NA	Intergenic	MIRb|SINE|MIR	42914	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
10316	chr1	64884151	64884800	+	0	NA	intron (NM_001321857, intron 2 of 24)	intron (NM_001321857, intron 2 of 24)	82074	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
141215	chr2	239381871	239382030	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	19070	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
104338	chr17	80968701	80969330	+	0	NA	intron (NR_148968, intron 1 of 1)	intron (NR_148968, intron 1 of 1)	2198	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
180912	chr5	34241601	34241800	+	0	NA	intron (NR_146599, intron 1 of 11)	AluJr|SINE|Alu	3024	NR_146599	114899		NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and TNF related 3	protein-coding
113323	chr19	8588901	8589530	+	0	NA	intron (NM_030957, intron 18 of 25)	intron (NM_030957, intron 18 of 25)	2981	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
33701	chr10	120942821	120943300	+	0	NA	Intergenic	Intergenic	91698	NM_018117	55717		NM_018117	ENSG00000120008	WDR11	BRWD2|DR11|HH14|SRI1|WDR15	WD repeat domain 11	protein-coding
62179	chr13	97431501	97431780	+	0	NA	Intergenic	Intergenic	-2529	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
44199	chr11	96278521	96278980	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-62688	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
205564	chr7	20785521	20786130	+	0	NA	intron (NM_182700, intron 1 of 1)	GA-rich|Low_complexity|Low_complexity	1061	NM_198956	221833		NM_182700	ENSG00000164651	SP8	BTD	Sp8 transcription factor	protein-coding
235951	chrX	53319751	53320800	+	0	NA	intron (NM_001111125, intron 1 of 14)	intron (NM_001111125, intron 1 of 14)	1075	NM_001111125	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
76844	chr15	77632601	77633000	+	0	NA	5' UTR (NM_032808, exon 1 of 2)	5' UTR (NM_032808, exon 1 of 2)	112	NM_032808	84894		NM_032808	ENSG00000169783	LINGO1	LERN1|LRRN6A|MRT64|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
48348	chr12	9344921	9345730	+	0	NA	Intergenic	Intergenic	-22139	NR_120479	101930452		NR_120479	ENSG00000260423	LINC02367	-	long intergenic non-protein coding RNA 2367	ncRNA
201899	chr6	151284571	151285330	+	0	NA	intron (NM_005100, intron 2 of 4)	intron (NM_005100, intron 2 of 4)	-40581	NM_144497	9590		NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
224627	chr9	20552801	20553980	+	0	NA	intron (NM_001286691, intron 2 of 10)	L2a|LINE|L2	-51048	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
131897	chr2	98759251	98760850	+	0	NA	Intergenic	Intergenic	11848	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
145452	chr20	43590251	43591530	+	0	NA	promoter-TSS (NM_001303459)	promoter-TSS (NM_001303459)	-47	NM_016004	51098		NM_016004	ENSG00000101052	IFT52	C20orf9|CGI-53|NGD2|NGD5	intraflagellar transport 52	protein-coding
230838	chr9	129084001	129084200	+	0	NA	intron (NM_001135917, intron 1 of 6)	intron (NM_001135917, intron 1 of 6)	2989	NR_072983	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
194226	chr6	32243671	32244030	+	0	NA	Intergenic	Intergenic	-11323	NR_136245	101929163		NM_001013681	ENSG00000225914	TSBP1-AS1	-	TSBP1 and BTNL2 antisense RNA 1	ncRNA
40715	chr11	64798451	64798550	+	0	NA	intron (NM_004579, intron 15 of 31)	AluSq2|SINE|Alu	4714	NM_004579	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
92287	chr17	8080901	8081500	+	0	NA	intron (NM_001139, intron 2 of 14)	intron (NM_001139, intron 2 of 14)	6516	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
23093	chr1	226662711	226664280	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	11573	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
166878	chr3	123960571	123961830	+	0	NA	promoter-TSS (NM_001366339)	promoter-TSS (NM_001366339)	29	NM_001366336	64770		NM_022757	ENSG00000175455	CCDC14	-	coiled-coil domain containing 14	protein-coding
98689	chr17	47883371	47883730	+	0	NA	Intergenic	Intergenic	12266	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
16697	chr1	155210701	155211130	+	0	NA	intron (NM_198883, intron 3 of 6)	intron (NM_198883, intron 3 of 6)	2216	NM_002455	4580		NM_002455	ENSG00000173171	MTX1	MTX|MTXN	metaxin 1	protein-coding
148285	chr20	63703071	63703430	+	0	NA	intron (NM_003224, intron 4 of 7)	intron (NM_003224, intron 4 of 7)	-4192	NM_001083113	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
189599	chr5	175696101	175696750	+	0	NA	intron (NR_160284, intron 3 of 3)	MIRc|SINE|MIR	38354	NM_001367711	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
40674	chr11	64756801	64757230	+	0	NA	intron (NM_001164716, intron 3 of 17)	AluJo|SINE|Alu	2959	NM_005609	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
15575	chr1	150565701	150566150	+	0	NA	intron (NR_104133, intron 2 of 3)	AluJb|SINE|Alu	8627	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
95856	chr17	38830801	38831330	+	0	NA	Intergenic	AluJo|SINE|Alu	5227	NR_039880	100616416		NR_039880	ENSG00000274054	MIR4727	mir-4727	microRNA 4727	ncRNA
150731	chr21	43750501	43750700	+	0	NA	intron (NM_001331030, intron 6 of 9)	intron (NM_001331030, intron 6 of 9)	9114	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
62719	chr13	104920451	104920750	+	0	NA	Intergenic	L1PB1|LINE|L1	-545267	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
99965	chr17	57483471	57483630	+	0	NA	intron (NM_170721, intron 5 of 9)	LTR50|LTR|ERVL	40047	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
67528	chr14	71003901	71004550	+	0	NA	intron (NM_014982, intron 8 of 35)	MER58A|DNA|hAT-Charlie	96766	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
142860	chr20	17628471	17628700	+	0	NA	intron (NM_004587, intron 9 of 24)	intron (NM_004587, intron 9 of 24)	53657	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
224771	chr9	21997501	21997900	+	0	NA	intron (NR_047543, intron 1 of 8)	MLT2D|LTR|ERVL	-2376	NM_001363763	1029		NM_000077	ENSG00000147889	CDKN2A	ARF|CAI2|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
103049	chr17	77145101	77145800	+	0	NA	intron (NM_001039573, intron 3 of 17)	intron (NM_001039573, intron 3 of 17)	4481	NM_001143998	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
12213	chr1	100399451	100399800	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	47119	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
233047	chr9	137052551	137052880	+	0	NA	intron (NM_203468, intron 1 of 8)	intron (NM_203468, intron 1 of 8)	1346	NM_001246	954		NM_001246	ENSG00000054179	ENTPD2	CD39L1|NTPDase-2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding
5101	chr1	24847901	24849530	+	0	NA	Intergenic	CpG	70701	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
83088	chr16	22438771	22439530	+	0	NA	intron (NR_027154, intron 1 of 28)	intron (NR_027154, intron 1 of 28)	-1435	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
152861	chr22	22301301	22301500	+	0	NA	intron (NR_027293, intron 1 of 10)	L1MDa|LINE|L1	3302	NR_027293	96610		NM_080926		BMS1P20	IGL|IGLV|IGLV1	BMS1 pseudogene 20	pseudo
9093	chr1	45018521	45019030	+	0	NA	exon (NM_020883, exon 14 of 14)	exon (NM_020883, exon 14 of 14)	6521	NR_158185	7389		NM_000374	ENSG00000126088	UROD	PCT|UPD	uroporphyrinogen decarboxylase	protein-coding
169853	chr3	177192301	177192950	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	3853	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
17010	chr1	156017351	156018130	+	0	NA	intron (NM_003145, intron 3 of 5)	AluSc|SINE|Alu	3211	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
168776	chr3	151305121	151305800	+	0	NA	intron (NM_023915, intron 1 of 2)	intron (NM_023915, intron 1 of 2)	11360	NM_023915	53836		NM_023915	ENSG00000138271	GPR87	FKSG78|GPR95|KPG_002	G protein-coupled receptor 87	protein-coding
47943	chr12	6831601	6831800	+	0	NA	intron (NM_014262, intron 5 of 14)	intron (NM_014262, intron 5 of 14)	3293	NM_014262	10536		NM_014262	ENSG00000110811	P3H3	GRCB|HSU47926|LEPREL2	prolyl 3-hydroxylase 3	protein-coding
140730	chr2	234448651	234448950	+	0	NA	intron (NR_146988, intron 2 of 2)	L2|LINE|L2	5795	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
99990	chr17	57730121	57730380	+	0	NA	Intergenic	(GTGTGG)n|Simple_repeat|Simple_repeat	15049	NM_001282544	101927581		NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
103192	chr17	77457801	77458000	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	3873	NM_001293698	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
40175	chr11	62892451	62893300	+	0	NA	Intergenic	L2b|LINE|L2	11176	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
71258	chr14	105203951	105204050	+	0	NA	Intergenic	Intergenic	-22677	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
25852	chr10	11235451	11235550	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	70470	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
115680	chr19	16186921	16187830	+	0	NA	intron (NM_014077, intron 2 of 3)	AluSg|SINE|Alu	1965	NM_014077	26017		NM_014077	ENSG00000105058	FAM32A	OTAG-12|OTAG12	family with sequence similarity 32 member A	protein-coding
215186	chr7	155733671	155734200	+	0	NA	intron (NM_053043, intron 9 of 17)	intron (NM_053043, intron 9 of 17)	75228	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
82047	chr16	12535871	12536430	+	0	NA	intron (NM_032167, intron 20 of 20)	intron (NM_032167, intron 20 of 20)	-184171	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
68972	chr14	91448571	91448930	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-30930	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
147311	chr20	57705771	57706300	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	3980	NM_020182	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
203942	chr7	1545221	1545850	+	0	NA	3' UTR (NM_001097620, exon 9 of 9)	3' UTR (NM_001097620, exon 9 of 9)	-10655	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
152605	chr22	21402071	21402530	+	0	NA	Intergenic	MIRc|SINE|MIR	-15071	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
182163	chr5	56610271	56611030	+	0	NA	Intergenic	LTR78|LTR|ERV1	-4394	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
34307	chr10	132001351	132001950	+	0	NA	Intergenic	MER51A|LTR|ERV1	-19637	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
123435	chr19	54123221	54123480	+	0	NA	intron (NM_015629, intron 5 of 13)	intron (NM_015629, intron 5 of 13)	7596	NM_015629	26121		NM_015629	ENSG00000105618	PRPF31	NY-BR-99|PRP31|RP11|SNRNP61	pre-mRNA processing factor 31	protein-coding
151814	chr22	18340051	18340700	+	0	NA	Intergenic	Intergenic	46181	NR_136569	729461		NM_201401	ENSG00000274044	FAM230J	LINC01660	family with sequence similarity 230 member J	ncRNA
111894	chr19	4673771	4674400	+	0	NA	Intergenic	AluJb|SINE|Alu	-3743	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
68301	chr14	77221291	77221730	+	0	NA	intron (NM_020431, intron 5 of 23)	intron (NM_020431, intron 5 of 23)	39712	NM_020431	57156		NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|SPG87|hsCSC1	transmembrane protein 63C	protein-coding
101068	chr17	64840171	64840330	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-3066	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
76914	chr15	78041001	78042450	+	0	NA	intron (NM_144572, intron 3 of 12)	intron (NM_144572, intron 3 of 12)	35927	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
225907	chr9	40105251	40107480	+	0	NA	Intergenic	SST1|Satellite|centr	-217206	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
214973	chr7	152027451	152029080	+	0	NA	intron (NM_001371468, intron 2 of 12)	LTR12D|LTR|ERV1	2591	NM_001371461	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
115569	chr19	15780471	15780830	+	0	NA	promoter-TSS (NR_033864)	promoter-TSS (NR_033864)	-662	NR_033864	388514		NR_033864		CYP4F24P	-	cytochrome P450 family 4 subfamily F member 24, pseudogene	pseudo
33659	chr10	119784671	119785430	+	0	NA	intron (NM_001243195, intron 3 of 4)	L1MB8|LINE|L1	-34207	NM_001243194	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
121529	chr19	47230001	47230800	+	0	NA	intron (NM_001127240, intron 1 of 3)	CpG	799	NM_014417	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
9403	chr1	47445871	47446330	+	0	NA	Intergenic	Intergenic	8056	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
195256	chr6	36424521	36425030	+	0	NA	intron (NM_152990, intron 3 of 4)	AluSz|SINE|Alu	-17992	NM_001286580	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
109730	chr19	1089101	1089300	+	0	NA	intron (NM_001316323, intron 6 of 6)	intron (NM_001316323, intron 6 of 6)	6175	NM_002695	5434		NM_002695	ENSG00000099817	POLR2E	RPABC1|RPB5|XAP4|hRPB25|hsRPB5	RNA polymerase II, I and III subunit E	protein-coding
213826	chr7	141562501	141562700	+	0	NA	intron (NM_018238, intron 2 of 15)	L1PBa|LINE|L1	11190	NM_001364948	55750		NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
157310	chr22	44497571	44498850	+	0	NA	promoter-TSS (NM_032287)	promoter-TSS (NM_032287)	23	NM_032287	84247		NM_032287	ENSG00000188636	RTL6	LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2	retrotransposon Gag like 6	protein-coding
117390	chr19	19600071	19600230	+	0	NA	intron (NM_025245, intron 1 of 7)	AluSz|SINE|Alu	18537	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
144422	chr20	35404471	35405200	+	0	NA	intron (NM_199487, intron 1 of 8)	L1MB3|LINE|L1	7138	NM_018244	55245		NM_018244	ENSG00000101019	UQCC1	BFZB|C20orf44|CBP3|UQCC	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding
152955	chr22	22942301	22943430	+	0	NA	Intergenic	Intergenic	55049	NM_001178126	100423062		NM_001178126	ENSG00000254709	IGLL5	IGL|IGLV|VL-MAR	immunoglobulin lambda like polypeptide 5	protein-coding
158884	chr3	9893871	9894100	+	0	NA	3' UTR (NM_032492, exon 2 of 2)	3' UTR (NM_032492, exon 2 of 2)	3375	NM_001363890	84522		NM_032492	ENSG00000171135	JAGN1	GL009|SCN6	jagunal homolog 1	protein-coding
106533	chr18	21242151	21242530	+	0	NA	promoter-TSS (NM_001142966)	promoter-TSS (NM_001142966)	98	NM_001142966	80000		NM_024935	ENSG00000141449	GREB1L	C18orf6|DFNA80|KIAA1772|RHDA3	GREB1 like retinoic acid receptor coactivator	protein-coding
41225	chr11	65711501	65713430	+	0	NA	intron (NM_182709, intron 2 of 12)	CpG	213	NM_006388	10524		NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|NEDFASB|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
234921	chrX	37745401	37745980	+	0	NA	Intergenic	Intergenic	-34369	NM_000397	1536		NM_000397	ENSG00000165168	CYBB	AMCBX2|CGD|CGDX|GP91-1|GP91-PHOX|GP91PHOX|IMD34|NOX2|p91-PHOX	cytochrome b-245 beta chain	protein-coding
171450	chr3	196316951	196318850	+	0	NA	promoter-TSS (NR_121665)	promoter-TSS (NR_121665)	340	NM_001351628	255758		NM_152773	ENSG00000213123	DYNLT2B	SRTD17|TCTEX1D2	dynein light chain Tctex-type 2B	protein-coding
160020	chr3	18409271	18409630	+	0	NA	intron (NM_001322873, intron 5 of 10)	intron (NM_001322873, intron 5 of 10)	15889	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
133244	chr2	113253301	113253500	+	0	NA	intron (NR_015377, intron 2 of 5)	intron (NR_015377, intron 2 of 5)	17131	NR_015377	654433		NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
225657	chr9	36407121	36407980	+	0	NA	Intergenic	Intergenic	-6352	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
97432	chr17	43540351	43540650	+	0	NA	intron (NM_001322219, intron 23 of 23)	MER5A|DNA|hAT-Charlie	5399	NM_001986	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
80421	chr16	2627971	2628450	+	0	NA	intron (NR_015441, intron 3 of 3)	AluSx1|SINE|Alu	-10772	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
50061	chr12	44750021	44750280	+	0	NA	intron (NM_001145108, intron 9 of 19)	intron (NM_001145108, intron 9 of 19)	125511	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
86075	chr16	57614571	57614930	+	0	NA	Intergenic	Intergenic	-4988	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
220746	chr8	102241801	102242250	+	0	NA	intron (NR_125415, intron 1 of 2)	intron (NR_125415, intron 1 of 2)	2574	NR_125415	101927221		NR_125415		UBR5-DT	UBR5-AS1	UBR5 divergent transcript	ncRNA
136580	chr2	178072501	178072900	+	0	NA	promoter-TSS (NM_016953)	promoter-TSS (NM_016953)	77	NM_016953	50940		NM_016953	ENSG00000128655	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
139783	chr2	230228421	230228850	+	0	NA	intron (NM_001278451, intron 1 of 25)	L1MCb|LINE|L1	2899	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
164275	chr3	57579771	57579930	+	0	NA	intron (NM_001660, intron 3 of 5)	AluJr|SINE|Alu	17494	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
101096	chr17	64969871	64970500	+	0	NA	intron (NR_026903, intron 4 of 4)	intron (NR_026903, intron 4 of 4)	5400	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
219261	chr8	67334821	67335080	+	0	NA	intron (NM_006421, intron 1 of 38)	L1MB7|LINE|L1	8831	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
150609	chr21	43365201	43365830	+	0	NA	Intergenic	Intergenic	-3166	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
178841	chr4	153652551	153652650	+	0	NA	intron (NR_134873, intron 2 of 2)	intron (NR_134873, intron 2 of 2)	12432	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
31738	chr10	97740201	97740400	+	0	NA	intron (NM_001174122, intron 2 of 8)	intron (NM_001174122, intron 2 of 8)	1823	NM_001002261	118813		NM_144588	ENSG00000155256	ZFYVE27	PROTRUDIN|SPG33	zinc finger FYVE-type containing 27	protein-coding
30036	chr10	73801771	73802250	+	0	NA	promoter-TSS (NR_038357)	promoter-TSS (NR_038357)	-611	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
56363	chr12	113129551	113129850	+	0	NA	intron (NM_001301202, intron 2 of 20)	intron (NM_001301202, intron 2 of 20)	5899	NM_001301202	8437		NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
119552	chr19	40603511	40604600	+	0	NA	intron (NM_001042545, intron 1 of 29)	CpG	2686	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
65952	chr14	55803071	55803250	+	0	NA	Intergenic	L2a|LINE|L2	-6486	NR_026796	645687		NR_026796	ENSG00000258791	LINC00520	C14orf34|LASSIE|LEENE|LncRNA00520	long intergenic non-protein coding RNA 520	ncRNA
87485	chr16	71791301	71791900	+	0	NA	intron (NM_001128, intron 1 of 22)	AluJb|SINE|Alu	17234	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
19201	chr1	172412071	172412230	+	0	NA	non-coding (NR_146559, exon 21 of 21)	non-coding (NR_146559, exon 21 of 21)	-8535	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
148169	chr20	63530301	63531050	+	0	NA	intron (NM_005975, intron 6 of 7)	intron (NM_005975, intron 6 of 7)	6695	NM_001256358	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
206667	chr7	36319051	36319380	+	0	NA	Intergenic	Intergenic	48025	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
31569	chr10	97327121	97327880	+	0	NA	Intergenic	(TTTCA)n|Simple_repeat|Simple_repeat	7229	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
14264	chr1	143268551	143268650	+	0	NA	Intergenic	Intergenic	153992	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
35561	chr11	1660371	1661150	+	0	NA	Intergenic	Intergenic	-4837	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
136669	chr2	180977771	180978400	+	0	NA	Intergenic	Intergenic	-2300	NM_001278555	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
173409	chr4	8115951	8116280	+	0	NA	intron (NM_001130086, intron 1 of 17)	MLT1G1|LTR|ERVL-MaLR	42698	NM_001130085	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
209714	chr7	86939071	86939430	+	0	NA	intron (NM_001142749, intron 6 of 21)	intron (NM_001142749, intron 6 of 21)	26649	NM_152748	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
28872	chr10	62696771	62697030	+	0	NA	Intergenic	Intergenic	-107820	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
55536	chr12	105331701	105332530	+	0	NA	intron (NM_001145199, intron 1 of 5)	intron (NM_001145199, intron 1 of 5)	1424	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
150959	chr21	44316051	44316350	+	0	NA	intron (NM_001002021, intron 10 of 24)	intron (NM_001002021, intron 10 of 24)	16147	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
97254	chr17	43000621	43001230	+	0	NA	intron (NM_001349921, intron 3 of 4)	AluSq2|SINE|Alu	2506	NM_001349922	6155		NM_000988	ENSG00000131469	RPL27	DBA16|L27|eL27	ribosomal protein L27	protein-coding
72361	chr15	31349201	31350150	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	22840	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
203024	chr6	163517021	163517280	+	0	NA	intron (NM_206854, intron 3 of 6)	MLT2F|LTR|ERVL	102432	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
227462	chr9	90964271	90964730	+	0	NA	Intergenic	Intergenic	110632	NR_033912	100129316		NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
54961	chr12	96256921	96257380	+	0	NA	intron (NM_001303511, intron 1 of 2)	intron (NM_001303511, intron 1 of 2)	1652	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
190324	chr5	179619251	179619580	+	0	NA	intron (NM_001364248, intron 4 of 12).2	intron (NM_001364248, intron 4 of 12).2	3986	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
103343	chr17	78039701	78039900	+	0	NA	intron (NM_001142640, intron 3 of 21)	intron (NM_001142640, intron 3 of 21)	35563	NM_018996	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
187367	chr5	141836101	141836500	+	0	NA	Intergenic	Intergenic	29902	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
26233	chr10	14592201	14592950	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	11826	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
137413	chr2	196274121	196274800	+	0	NA	intron (NM_001348768, intron 15 of 28)	intron (NM_001348768, intron 15 of 28)	14436	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
27436	chr10	31756751	31756850	+	0	NA	Intergenic	MIRb|SINE|MIR	152126	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
59904	chr13	30775501	30775700	+	0	NA	Intergenic	LTR82A|LTR|ERVL	-27606	NR_047012	100874158		NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
221544	chr8	124751501	124752150	+	0	NA	Intergenic	Intergenic	-23318	NM_001282974	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
139684	chr2	227323001	227323500	+	0	NA	intron (NR_102371, intron 1 of 13)	MER34|LTR|ERV1	1914	NR_102371	654841		NR_102371	ENSG00000236432	MFF-DT	-	MFF divergent transcript	ncRNA
88913	chr16	87815201	87815400	+	0	NA	Intergenic	Intergenic	19360	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
34936	chr11	439601	439800	+	0	NA	intron (NM_001347882, intron 1 of 21)	intron (NM_001347882, intron 1 of 21)	2311	NM_001347882	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
233229	chr9	137242501	137243200	+	0	NA	TTS (NM_001001710)	TTS (NM_001001710)	1563	NM_006088	10383		NM_006088	ENSG00000188229	TUBB4B	Beta2|LCAEOD|TUBB2|TUBB2C	tubulin beta 4B class IVb	protein-coding
103227	chr17	77491151	77491250	+	0	NA	intron (NM_001293697, intron 6 of 9)	intron (NM_001293697, intron 6 of 9)	15565	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
98876	chr17	48545621	48545880	+	0	NA	promoter-TSS (NM_002145)	promoter-TSS (NM_002145)	-719	NM_002145	3212		NM_002145	ENSG00000173917	HOXB2	HOX2|HOX2H|Hox-2.8|K8	homeobox B2	protein-coding
180531	chr5	14589451	14589750	+	0	NA	intron (NM_019018, intron 1 of 7)	MER81|DNA|hAT-Blackjack	7808	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
128456	chr2	55618501	55619480	+	0	NA	Intergenic	Intergenic	-1368	NM_001282850	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
41672	chr11	66609751	66610400	+	0	NA	Intergenic	Intergenic	-6507	NM_001198845	100526737		NM_001198845	ENSG00000248643	RBM14-RBM4	COAZ|PSP2|RBM14|SIP	RBM14-RBM4 readthrough	protein-coding
18555	chr1	162566801	162567230	+	0	NA	intron (NM_001324114, intron 2 of 9)	intron (NM_001324114, intron 2 of 9)	5116	NM_001324114	6675		NM_003115	ENSG00000117143	UAP1	AGX|AGX1|AGX2|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
207484	chr7	44639081	44640430	+	0	NA	intron (NM_001363523, intron 2 of 23)	intron (NM_001363523, intron 2 of 23)	33128	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
210464	chr7	100134801	100135280	+	0	NA	Intergenic	AluJr|SINE|Alu	8073	NM_203397	255374		NM_203397	ENSG00000214309	MBLAC1	-	metallo-beta-lactamase domain containing 1	protein-coding
114372	chr19	12495001	12496050	+	0	NA	Intergenic	CpG	-10709	NM_152601	163051		NM_152601	ENSG00000242852	ZNF709	-	zinc finger protein 709	protein-coding
227575	chr9	92295951	92296450	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-2503	NM_001378576	3376		NM_002161	ENSG00000196305	IARS1	GRIDHH|IARS|ILERS|ILRS|IRS|PRO0785	isoleucyl-tRNA synthetase 1	protein-coding
209613	chr7	77693451	77693950	+	0	NA	intron (NR_134251, intron 1 of 3)	MER115|DNA|hAT-Tip100	2565	NR_134254	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
180816	chr5	32436071	32436730	+	0	NA	intron (NR_144318, intron 2 of 18)	AluY|SINE|Alu	8340	NM_016107	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
95391	chr17	35902771	35902930	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	8173	NR_126038	100533789		NR_126038		LRRC37A8P	-	leucine rich repeat containing 37 member A8, pseudogene	pseudo
91399	chr17	4639151	4639950	+	0	NA	exon (NM_001140, exon 2 of 14)	exon (NM_001140, exon 2 of 14)	2128	NM_001140	246		NM_001140	ENSG00000161905	ALOX15	12-LOX|15-LOX|15-LOX-1|LOG15	arachidonate 15-lipoxygenase	protein-coding
81710	chr16	11251071	11251230	+	0	NA	Intergenic	AluJo|SINE|Alu	5032	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
112538	chr19	6526621	6527250	+	0	NA	Intergenic	AluJb|SINE|Alu	-4091	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
35292	chr11	975601	976230	+	0	NA	intron (NR_144509, intron 4 of 20)	intron (NR_144509, intron 4 of 20)	50045	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
91197	chr17	3896071	3896980	+	0	NA	TTS (NM_002558)	TTS (NM_002558)	-3472	NM_032294	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
200242	chr6	131923471	131923630	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	27822	NM_001901	1490		NM_001901	ENSG00000118523	CCN2	CTGF|HCS24|IBP-8|IGFBP8|NOV2	cellular communication network factor 2	protein-coding
161647	chr3	43316871	43317230	+	0	NA	intron (NM_017719, intron 3 of 6)	intron (NM_017719, intron 3 of 6)	30510	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
235615	chrX	48002071	48002430	+	0	NA	intron (NM_006962, intron 3 of 6)	L4_B_Mam|LINE|RTE-X	1739	NM_001007088	7569		NM_006962	ENSG00000147118	ZNF182	HHZ150|KOX14|ZNF21|Zfp182	zinc finger protein 182	protein-coding
89125	chr16	88504601	88504830	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	26338	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
184539	chr5	102536451	102536550	+	0	NA	Intergenic	Intergenic	-37499	NM_173488	133482		NM_173488	ENSG00000205359	SLCO6A1	CT48|GST|OATP-I|OATP6A1|OATPY	solute carrier organic anion transporter family member 6A1	protein-coding
102888	chr17	76524171	76524330	+	0	NA	Intergenic	(TTCTTT)n|Simple_repeat|Simple_repeat	-3336	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
994	chr1	1841301	1842830	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSx|SINE|Alu	49022	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
10298	chr1	64852871	64853450	+	0	NA	intron (NM_001321857, intron 11 of 24)	intron (NM_001321857, intron 11 of 24)	108085	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
206305	chr7	30161201	30161600	+	0	NA	3' UTR (NM_152793, exon 3 of 3)	3' UTR (NM_152793, exon 3 of 3)	26414	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
189708	chr5	176521701	176521900	+	0	NA	Intergenic	L2b|LINE|L2	15602	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
154865	chr22	37131571	37131930	+	0	NA	intron (NM_000878, intron 9 of 9)	AluSg|SINE|Alu	18166	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
187861	chr5	147810271	147810430	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	21321	NM_001379610	6690		NM_003122	ENSG00000164266	SPINK1	PCTT|PSTI|Spink3|TATI|TCP	serine peptidase inhibitor Kazal type 1	protein-coding
141201	chr2	239328251	239328950	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	23138	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
198996	chr6	110939421	110939680	+	0	NA	Intergenic	Intergenic	-19156	NM_138408	112495		NM_138408	ENSG00000155115	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC subunit 6	protein-coding
117738	chr19	29619901	29620100	+	0	NA	Intergenic	AluJr|SINE|Alu	13717	NR_027368	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
193518	chr6	30585001	30585430	+	0	NA	TTS (NR_030615).2	TTS (NR_030615).2	883	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
238403	chrX	150546171	150548050	+	0	NA	Intergenic	Intergenic	-21511	NM_001376906	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
109398	chr19	671571	671730	+	0	NA	Intergenic	MIRb|SINE|MIR	-4742	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
23572	chr1	229480421	229481080	+	0	NA	intron (NM_018230, intron 12 of 25)	AluSz|SINE|Alu	27591	NM_018230	55746		NM_018230	ENSG00000069248	NUP133	GAMOS8|NPHS18|hNUP133	nucleoporin 133	protein-coding
235488	chrX	46844871	46845030	+	0	NA	intron (NM_006915, intron 1 of 4)	L1PA5|LINE|L1	7907	NM_006915	6102		NM_006915	ENSG00000102218	RP2	DELXp11.3|NM23-H10|NME10|TBCCD2|XRP2	RP2 activator of ARL3 GTPase	protein-coding
151200	chr21	45117451	45117550	+	0	NA	intron (NM_001346688, intron 1 of 11)	intron (NM_001346688, intron 1 of 11)	-35030	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
65617	chr14	52271521	52271780	+	0	NA	intron (NM_001281469, intron 2 of 2)	Charlie1|DNA|hAT-Charlie	3952	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
196762	chr6	45441851	45443280	+	0	NA	intron (NM_001278478, intron 3 of 5)	intron (NM_001278478, intron 3 of 5)	20290	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
101404	chr17	67382521	67382780	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSx1|SINE|Alu	5369	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
166582	chr3	118882321	118882630	+	0	NA	Intergenic	Intergenic	-60601	NR_046230	100506765		NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
130944	chr2	87507201	87508200	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	37750	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
222775	chr8	141981301	141981500	+	0	NA	Intergenic	L2c|LINE|L2	-194939	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
170177	chr3	183660201	183660400	+	0	NA	intron (NM_001349429, intron 4 of 8)	AluJb|SINE|Alu	24677	NR_146170	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
22597	chr1	223228801	223229350	+	0	NA	intron (NM_017982, intron 6 of 8)	intron (NM_017982, intron 6 of 8)	-85827	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
187955	chr5	149344421	149346000	+	0	NA	promoter-TSS (NM_152407)	promoter-TSS (NM_152407)	-289	NM_152407	134266		NM_152407	ENSG00000164284	GRPEL2	Mt-GrpE#2	GrpE like 2, mitochondrial	protein-coding
225878	chr9	39411551	39411650	+	0	NA	Intergenic	Intergenic	40535	NR_026803	401507		NM_001012278	ENSG00000215112	FAM74A1	FAM74A5	family with sequence similarity 74 member A1	ncRNA
230194	chr9	127805651	127806400	+	0	NA	intron (NR_110170, intron 4 of 14)	Kanga2_a|DNA|TcMar-Tc2	2844	NM_001018078	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
144600	chr20	35804051	35804350	+	0	NA	intron (NM_016436, intron 2 of 17)	AluSx1|SINE|Alu	32185	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
182310	chr5	58761371	58761530	+	0	NA	intron (NM_138453, intron 3 of 4)	intron (NM_138453, intron 3 of 4)	178375	NM_138453	115827		NM_138453	ENSG00000152932	RAB3C	-	RAB3C, member RAS oncogene family	protein-coding
45862	chr11	119648121	119648380	+	0	NA	intron (NM_203285, intron 5 of 7)	intron (NM_203285, intron 5 of 7)	80950	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
119635	chr19	40800301	40801550	+	0	NA	exon (NM_080732, exon 2 of 6)	exon (NM_080732, exon 2 of 6)	1403	NM_053046	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
141080	chr2	238286421	238286680	+	0	NA	intron (NM_022817, intron 1 of 22)	intron (NM_022817, intron 1 of 22)	2060	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
178347	chr4	145930751	145931050	+	0	NA	intron (NM_178835, intron 1 of 14)	intron (NM_178835, intron 1 of 14)	7923	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
7020	chr1	31916471	31916630	+	0	NA	intron (NM_001369859, intron 3 of 6)	L1ME4a|LINE|L1	21268	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
232925	chr9	136886021	136887300	+	0	NA	promoter-TSS (NR_039697)	promoter-TSS (NR_039697)	-73	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
178223	chr4	142703721	142704580	+	0	NA	intron (NM_001385336, intron 2 of 26)	LTR104_Mam|LTR|Gypsy	142151	NM_001385335	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
168749	chr3	151188051	151188160	+	0	NA	intron (NM_053002, intron 11 of 42)	5S|rRNA|rRNA	15111	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
208590	chr7	72936871	72938280	+	0	NA	intron (NM_172020, intron 6 of 13)	intron (NM_172020, intron 6 of 13)	17188	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
154951	chr22	37245521	37245780	+	0	NA	Intergenic	Intergenic	-1381	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
118091	chr19	34394401	34394600	+	0	NA	intron (NM_001184722, intron 12 of 17)	intron (NM_001184722, intron 12 of 17)	-9898	NM_001353433	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
179933	chr5	765101	765630	+	0	NA	intron (NM_001351303, intron 4 of 13)	LTR12C|LTR|ERV1	19364	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
158011	chr22	49900501	49901100	+	0	NA	3' UTR (NM_024105, exon 10 of 10)	3' UTR (NM_024105, exon 10 of 10)	17638	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
42736	chr11	72698221	72698500	+	0	NA	intron (NR_161388, intron 15 of 29)	L2c|LINE|L2	-2114	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
78494	chr15	92921421	92922180	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	17401	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
157163	chr22	42894821	42895930	+	0	NA	intron (NM_001349974, intron 1 of 9)	intron (NM_001349974, intron 1 of 9)	-38102	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
13855	chr1	117664071	117665580	+	0	NA	Intergenic	MIR3|SINE|MIR	58777	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
12335	chr1	101065501	101065980	+	0	NA	intron (NR_109849, intron 1 of 4)	intron (NR_109849, intron 1 of 4)	39894	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
103076	chr17	77317901	77318350	+	0	NA	intron (NM_001113491, intron 2 of 11)	Charlie3|DNA|hAT-Charlie	-1390	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
148010	chr20	63056121	63057250	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	18674	NR_033369	100144597		NR_033369	ENSG00000237119	LINC01056	-	long intergenic non-protein coding RNA 1056	ncRNA
144950	chr20	37081701	37082480	+	0	NA	intron (NM_183404, intron 2 of 20)	intron (NM_183404, intron 2 of 20)	13907	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
85894	chr16	57062871	57063630	+	0	NA	TTS (NM_001384969)	TTS (NM_001384969)	-29333	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
187605	chr5	142941121	142941380	+	0	NA	intron (NR_146198, intron 11 of 22)	L1PREC2|LINE|L1	-72340	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
140398	chr2	233081161	233081950	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	21213	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
24887	chr10	991821	992350	+	0	NA	intron (NM_012341, intron 1 of 16)	intron (NM_012341, intron 1 of 16)	3651	NM_012341	23560		NM_012341	ENSG00000107937	GTPBP4	CRFG|NGB|NOG1	GTP binding protein 4	protein-coding
198640	chr6	107795551	107795650	+	0	NA	intron (NM_198081, intron 1 of 7)	AluSx3|SINE|Alu	28713	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
97774	chr17	44557801	44558930	+	0	NA	exon (NM_001466, exon 1 of 1)	exon (NM_001466, exon 1 of 1)	881	NM_001466	2535		NM_001466	ENSG00000180340	FZD2	Fz2|OMOD2|fz-2|fzE2|hFz2	frizzled class receptor 2	protein-coding
93576	chr17	19107351	19107750	+	0	NA	Intergenic	MIRb|SINE|MIR	5086	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
236016	chrX	54921351	54921950	+	0	NA	intron (NM_001271184, intron 1 of 11)	intron (NM_001271184, intron 1 of 11)	826	NM_001271184	7216		NM_016157	ENSG00000067445	TRO	MAGE-d3|MAGED3	trophinin	protein-coding
171922	chr4	855921	856980	+	0	NA	intron (NM_001318134, intron 21 of 24)	intron (NM_001318134, intron 21 of 24)	-30321	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
151081	chr21	44820721	44821300	+	0	NA	Intergenic	L1MEj|LINE|L1	-2881	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
154601	chr22	36292771	36292930	+	0	NA	intron (NM_002473, intron 30 of 40)	intron (NM_002473, intron 30 of 40)	-5943	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
105785	chr18	2856471	2856630	+	0	NA	intron (NM_032048, intron 2 of 7)	intron (NM_032048, intron 2 of 7)	9544	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
11303	chr1	89280771	89281200	+	0	NA	Intergenic	L2a|LINE|L2	-8125	NM_052942	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
97615	chr17	44137951	44139030	+	0	NA	Intergenic	Intergenic	-3440	NM_001171251	78995		NM_024032	ENSG00000125319	HROB	C17orf53|MCM8IP	homologous recombination factor with OB-fold	protein-coding
116883	chr19	18671851	18672150	+	0	NA	TTS (NM_001345982)	TTS (NM_001345982)	-11680	NM_015321	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
38981	chr11	47586471	47586880	+	0	NA	promoter-TSS (NM_001367968)	promoter-TSS (NM_001367968)	-3	NM_001164379	399888		NM_001164379	ENSG00000196666	FAM180B	-	family with sequence similarity 180 member B	protein-coding
64987	chr14	38069921	38070180	+	0	NA	Intergenic	AluJb|SINE|Alu	-137854	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
100927	chr17	64470951	64471730	+	0	NA	intron (NM_001369493, intron 9 of 9)	LTR16E2|LTR|ERVL	22225	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
230929	chr9	129383171	129384330	+	0	NA	Intergenic	CpG	46827	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
171044	chr3	195250651	195250950	+	0	NA	intron (NM_152531, intron 1 of 3)	L2a|LINE|L2	-2880	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
210008	chr7	93146021	93146280	+	0	NA	intron (NM_001350083, intron 1 of 3)	L2a|LINE|L2	2235	NM_152703	219285		NM_152703	ENSG00000177409	SAMD9L	ATXPC|C7DELq|C7orf6|DEL7q|DRIF2|M7MLS1|MLSM7|SCA49|UEF1	sterile alpha motif domain containing 9 like	protein-coding
147817	chr20	62704371	62704530	+	0	NA	Intergenic	Intergenic	-4386	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
74976	chr15	63858701	63859150	+	0	NA	Intergenic	AluSx1|SINE|Alu	12094	NR_029944	494334		NR_029944	ENSG00000199156	MIR422A	MIRN422A	microRNA 422a	ncRNA
34109	chr10	126011951	126012250	+	0	NA	TTS (NM_001288973)	TTS (NM_001288973)	-38827	NR_102707	101410540		NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
43791	chr11	86288751	86289950	+	0	NA	Intergenic	Intergenic	11017	NR_106813	102465452		NR_106813	ENSG00000283744	MIR6755	hsa-mir-6755	microRNA 6755	ncRNA
75949	chr15	70424901	70425580	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	80688	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
162271	chr3	47309421	47309680	+	0	NA	intron (NM_025010, intron 1 of 9)	SVA_C|Retroposon|SVA	26606	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
71941	chr15	23042171	23042650	+	0	NA	Intergenic	Intergenic	-2737	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
137295	chr2	195561951	195563330	+	0	NA	Intergenic	Intergenic	-94318	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
113874	chr19	10665701	10665900	+	0	NA	intron (NM_153464, intron 1 of 17)	AluSp|SINE|Alu	11454	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
140366	chr2	232781721	232782180	+	0	NA	intron (NM_001103147, intron 10 of 30)	MIRc|SINE|MIR	-5385	NM_002242	3769		NM_002242	ENSG00000115474	KCNJ13	KIR1.4|KIR7.1|LCA16|SVD	potassium inwardly rectifying channel subfamily J member 13	protein-coding
205111	chr7	6849401	6849600	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-23225	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
165554	chr3	101425321	101425580	+	0	NA	intron (NM_001077203, intron 4 of 22)	L1PA13|LINE|L1	87762	NM_001282802	57337		NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
95021	chr17	32444051	32445330	+	0	NA	intron (NM_001270482, intron 1 of 12)	CpG	180	NM_001270482	5717		NM_002815	ENSG00000108671	PSMD11	Rpn6|S9|p44.5	proteasome 26S subunit, non-ATPase 11	protein-coding
26315	chr10	15093121	15093650	+	0	NA	Intergenic	Intergenic	-3795	NM_001265601	10557		NM_006414	ENSG00000152464	RPP38	-	ribonuclease P/MRP subunit p38	protein-coding
177075	chr4	108052371	108053030	+	0	NA	intron (NM_001130714, intron 9 of 9)	MIR3|SINE|MIR	48036	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
91029	chr17	2825501	2825700	+	0	NA	intron (NM_001100398, intron 2 of 23)	MIRb|SINE|MIR	29162	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
17641	chr1	157137151	157137450	+	0	NA	intron (NM_005240, intron 1 of 3)	intron (NM_005240, intron 1 of 3)	1095	NM_001145312	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
49471	chr12	25186771	25187530	+	0	NA	intron (NM_001204102, intron 2 of 16)	L2a|LINE|L2	8010	NR_147909	55259		NM_018272	ENSG00000118307	DNAI7	CASC1|CFAP94|LAS1|PPP1R54	dynein axonemal intermediate chain 7	protein-coding
130022	chr2	74250051	74250600	+	0	NA	intron (NM_021196, intron 12 of 25)	intron (NM_021196, intron 12 of 25)	51710	NM_006636	10797		NM_006636	ENSG00000065911	MTHFD2	NMDMC	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	protein-coding
70283	chr14	101755621	101755880	+	0	NA	Intergenic	LTR33|LTR|ERVL	-4823	NM_001352914	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
38792	chr11	47248051	47249600	+	0	NA	promoter-TSS (NM_001130102)	promoter-TSS (NM_001130102)	-11	NM_001610	53		NM_001610	ENSG00000134575	ACP2	LAP	acid phosphatase 2, lysosomal	protein-coding
101172	chr17	65136801	65137950	+	0	NA	promoter-TSS (NM_003835)	promoter-TSS (NM_003835)	5	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
216515	chr8	20303781	20304930	+	0	NA	promoter-TSS (NM_021020)	promoter-TSS (NM_021020)	-392	NM_021020	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
60087	chr13	35478501	35478900	+	0	NA	intron (NM_001204197, intron 1 of 17)	CpG	1891	NM_001204197	26960		NM_015678	ENSG00000172915	NBEA	BCL8B|LYST2|NEDEGE	neurobeachin	protein-coding
57380	chr12	121805301	121807050	+	0	NA	intron (NM_001353345, intron 4 of 16)	intron (NM_001353345, intron 4 of 16)	2166	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
149927	chr21	36258171	36258330	+	0	NA	intron (NM_001320714, intron 23 of 36)	AluJb|SINE|Alu	-61939	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
86493	chr16	67020251	67020550	+	0	NA	Intergenic	AluY|SINE|Alu	-8749	NM_001755	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
52376	chr12	55707351	55709030	+	0	NA	promoter-TSS (NM_002206)	promoter-TSS (NM_002206)	-286	NM_001367994	3679		NM_002206	ENSG00000135424	ITGA7	-	integrin subunit alpha 7	protein-coding
19886	chr1	183637851	183638300	+	0	NA	intron (NM_015149, intron 1 of 18)	intron (NM_015149, intron 1 of 18)	1966	NM_001297670	23179		NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
87296	chr16	70098901	70099200	+	0	NA	Intergenic	AluSz|SINE|Alu	-14576	NM_001322117	55066		NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
148237	chr20	63632621	63632880	+	0	NA	Intergenic	AluSx|SINE|Alu	5515	NR_132418	100505771		NR_132417	ENSG00000232442	MHENCR	-	melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489	ncRNA
8317	chr1	40096651	40097950	+	0	NA	promoter-TSS (NM_000310)	promoter-TSS (NM_000310)	-48	NM_001363695	5538		NM_000310	ENSG00000131238	PPT1	CLN1|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding
198968	chr6	110885971	110887100	+	0	NA	intron (NM_001287216, intron 1 of 4)	AluSx1|SINE|Alu	11751	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
159508	chr3	14401201	14401430	+	0	NA	Intergenic	Intergenic	-1261	NM_001134367	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
71778	chr15	21329421	21329680	+	0	NA	Intergenic	Intergenic	-31721	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
70076	chr14	100154771	100155380	+	0	NA	intron (NM_206918, intron 1 of 2)	intron (NM_206918, intron 1 of 2)	4570	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
80509	chr16	2745821	2746280	+	0	NA	intron (NR_027275, intron 2 of 5)	intron (NR_027275, intron 2 of 5)	-1253	NR_027274	100128788		NR_027274	ENSG00000205913	SRRM2-AS1	-	SRRM2 antisense RNA 1	ncRNA
154739	chr22	36473801	36474480	+	0	NA	intron (NM_012473, intron 3 of 3)	intron (NM_012473, intron 3 of 3)	7500	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
109366	chr19	637171	637330	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2629	NM_020637	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
43982	chr11	94131401	94132480	+	0	NA	intron (NM_015368, intron 1 of 4)	intron (NM_015368, intron 1 of 4)	3099	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
31820	chr10	99371101	99371300	+	0	NA	intron (NM_001345887, intron 7 of 11)	intron (NM_001345887, intron 7 of 11)	41844	NM_020348	26507		NM_020348	ENSG00000119946	CNNM1	ACDP1|CLP-1	cyclin and CBS domain divalent metal cation transport mediator 1	protein-coding
126421	chr2	27723251	27723600	+	0	NA	intron (NR_160725, intron 2 of 2)	intron (NR_160725, intron 2 of 2)	7302	NR_160725	105374378		NR_160725		LOC105374378	-	uncharacterized LOC105374378	ncRNA
220779	chr8	102537421	102537680	+	0	NA	Intergenic	Intergenic	-14039	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
152367	chr22	20504071	20504430	+	0	NA	Intergenic	Intergenic	-3360	NM_001293236	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
153259	chr22	24130121	24130580	+	0	NA	intron (NM_012295, intron 28 of 36)	MIRb|SINE|MIR	-51137	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
1138	chr1	2151121	2151980	+	0	NA	intron (NR_146911, intron 6 of 15)	intron (NR_146911, intron 6 of 15)	32325	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
131024	chr2	88053171	88053650	+	0	NA	intron (NM_001304526, intron 1 of 3)	intron (NM_001304526, intron 1 of 3)	2373	NM_016618	51315		NM_016618	ENSG00000172086	KRCC1	CHBP2	lysine rich coiled-coil 1	protein-coding
115987	chr19	17082171	17082330	+	0	NA	intron (NM_004145, intron 1 of 39)	L2b|LINE|L2	6473	NM_004145	4650		NM_004145	ENSG00000099331	MYO9B	CELIAC4|MYR5	myosin IXB	protein-coding
100174	chr17	58631121	58632700	+	0	NA	intron (NM_198393, intron 2 of 32)	intron (NM_198393, intron 2 of 32)	60135	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
5994	chr1	26992971	26994930	+	0	NA	exon (NM_001013642, exon 1 of 2)	exon (NM_001013642, exon 1 of 2)	258	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
208023	chr7	55593601	55594200	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-21398	NM_001321244	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
98366	chr17	46370971	46371130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1763	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
14497	chr1	144555001	144555400	+	0	NA	Intergenic	Intergenic	-3257	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
171407	chr3	196204651	196204950	+	0	NA	intron (NR_135617, intron 5 of 8)	L1ME1|LINE|L1	6600	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
87761	chr16	75262551	75262850	+	0	NA	intron (NM_001170720, intron 1 of 7)	intron (NM_001170720, intron 1 of 7)	3307	NM_001170714	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
225600	chr9	36150121	36150700	+	0	NA	intron (NM_001287010, intron 3 of 3)	intron (NM_001287010, intron 3 of 3)	13625	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
136856	chr2	186492951	186493450	+	0	NA	intron (NM_018471, intron 1 of 9)	HAL1|LINE|L1	6940	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
36710	chr11	8963771	8965260	+	0	NA	promoter-TSS (NR_073431)	promoter-TSS (NR_073431)	-73	NM_020644	56674		NM_020644	ENSG00000175348	TMEM9B	C11orf15	TMEM9 domain family member B	protein-coding
138570	chr2	207714901	207715100	+	0	NA	intron (NM_001330218, intron 1 of 9)	AluSg|SINE|Alu	3360	NM_001330218	151195		NM_152523	ENSG00000163249	CCNYL1	-	cyclin Y like 1	protein-coding
144878	chr20	36918421	36919080	+	0	NA	intron (NM_001363733, intron 7 of 15)	AluSx|SINE|Alu	32958	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
123370	chr19	53897521	53897780	+	0	NA	intron (NM_001316329, intron 9 of 18)	MIR|SINE|MIR	-11628	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
1491	chr1	2757971	2758130	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	42818	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
234558	chrX	19734071	19734750	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	-63411	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
125106	chr2	9751721	9752000	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-91582	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
58232	chr12	128640421	128640500	+	0	NA	intron (NM_001136103, intron 4 of 8)	L1MB8|LINE|L1	183498	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
123845	chr19	55236051	55236150	+	0	NA	intron (NM_014931, intron 17 of 23)	AluSz|SINE|Alu	3876	NR_106860	102465481		NR_106860	ENSG00000278328	MIR6802	hsa-mir-6802	microRNA 6802	ncRNA
112729	chr19	7328701	7328900	+	0	NA	Intergenic	Intergenic	-20137	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
79640	chr16	1160171	1160330	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	7009	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
233096	chr9	137112951	137113050	+	0	NA	exon (NM_013379, exon 7 of 13)	exon (NM_013379, exon 7 of 13)	1733	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
222498	chr8	140467071	140467700	+	0	NA	Intergenic	Intergenic	-8806	NM_031466	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
387	chr1	1046671	1047930	+	0	NA	intron (NM_198576, intron 19 of 35)	intron (NM_198576, intron 19 of 35)	-12434	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
58454	chr12	132085401	132085780	+	0	NA	intron (NR_003290, intron 2 of 9)	MER44A|DNA|TcMar-Tigger	1307	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
209155	chr7	75170751	75171130	+	0	NA	intron (NR_003187, intron 1 of 10)	AluSx1|SINE|Alu	1058	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
225950	chr9	41073521	41073780	+	0	NA	intron (NR_002836, intron 1 of 8)	(GT)n|Simple_repeat|Simple_repeat	975	NR_002836	595135		NR_002836	ENSG00000290923	PGM5P2	-	phosphoglucomutase 5 pseudogene 2	pseudo
63146	chr13	113586751	113587130	+	0	NA	intron (NR_026580, intron 2 of 10)	intron (NR_026580, intron 2 of 10)	2187	NM_007111	7027		NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
18626	chr1	166089871	166090030	+	0	NA	intron (NR_163271, intron 1 of 2)	intron (NR_163271, intron 1 of 2)	64848	NR_030626	100126349		NR_030626	ENSG00000215952	MIR921	MIRN921|hsa-mir-921	microRNA 921	ncRNA
15603	chr1	150605571	150605930	+	0	NA	Intergenic	AluSx1|SINE|Alu	23383	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
187348	chr5	141681771	141682440	+	0	NA	intron (NM_022481, intron 1 of 32)	CpG	125	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
54802	chr12	94532871	94533250	+	0	NA	Intergenic	Intergenic	-28729	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	ncRNA
28362	chr10	47179221	47179830	+	0	NA	Intergenic	MIRc|SINE|MIR	-120672	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
86569	chr16	67225271	67225750	+	0	NA	intron (NM_001004055, intron 1 of 6)	intron (NM_001004055, intron 1 of 6)	1292	NM_001365159	26231		NM_012163	ENSG00000293507	FBXL9P	FBL9|FBXL9|LRRC29	F-box and leucine rich repeat protein, pseudogene	pseudo
149174	chr21	17931101	17931300	+	0	NA	intron (NM_001204177, intron 1 of 4)	L1PB4|LINE|L1	13860	NM_001204175	140578		NM_024944	ENSG00000154645	CHODL	C21orf68|MT75|PRED12	chondrolectin	protein-coding
38596	chr11	46293701	46294600	+	0	NA	intron (NM_052854, intron 1 of 11)	intron (NM_052854, intron 1 of 11)	16488	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
206648	chr7	36171521	36171780	+	0	NA	intron (NM_030636, intron 2 of 7)	intron (NM_030636, intron 2 of 7)	18396	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
1001	chr1	1848001	1848550	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSx3|SINE|Alu	42812	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
97930	chr17	45157171	45157850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2664	NM_001303437	124790		NM_144608	ENSG00000168517	HEXIM2	L3	HEXIM P-TEFb complex subunit 2	protein-coding
170042	chr3	182713951	182714280	+	0	NA	Intergenic	(GAGG)n|Simple_repeat|Simple_repeat	-79389	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
72871	chr15	40280771	40280930	+	0	NA	3' UTR (NM_001190479, exon 1 of 1)	3' UTR (NM_001190479, exon 1 of 1)	1736	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
231227	chr9	129967921	129968180	+	0	NA	intron (NM_001363755, intron 4 of 15)	intron (NM_001363755, intron 4 of 15)	75139	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
101229	chr17	65794651	65794750	+	0	NA	intron (NM_001353127, intron 21 of 26)	L2a|LINE|L2	31751	NM_001037325	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
196598	chr6	44226651	44226750	+	0	NA	intron (NM_001078175, intron 2 of 13)	intron (NM_001078175, intron 2 of 13)	3105	NM_001372327	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
31075	chr10	89029071	89029230	+	0	NA	Intergenic	L2a|LINE|L2	-34186	NR_039826	100616128		NR_039826	ENSG00000283664	MIR4679-1	-	microRNA 4679-1	ncRNA
61317	chr13	50365201	50366270	+	0	NA	intron (NR_109974, intron 2 of 6)	LTR88b|LTR|Gypsy?	161714	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
43266	chr11	75582771	75584230	+	0	NA	intron (NR_145823, intron 1 of 1)	CpG	304	NR_145823	105369391		NR_145823	ENSG00000255326	LOC105369391	-	uncharacterized LOC105369391	ncRNA
239378	chrY	20990271	20990430	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	234242	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
72178	chr15	29159201	29159480	+	0	NA	intron (NM_015307, intron 4 of 10)	LTR12C|LTR|ERV1	88682	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
86738	chr16	67639171	67640100	+	0	NA	TTS (NM_001191022)	TTS (NM_001191022)	-5509	NM_001317026	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
108344	chr18	67261921	67262180	+	0	NA	Intergenic	Intergenic	180466	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
47984	chr12	6904101	6906000	+	0	NA	5' UTR (NM_001135217, exon 1 of 8)	5' UTR (NM_001135217, exon 1 of 8)	228	NM_201650	10233		NM_006992	ENSG00000010626	LRRC23	LRPB7	leucine rich repeat containing 23	protein-coding
56873	chr12	120289311	120289900	+	0	NA	Intergenic	AluJb|SINE|Alu	-2175	NM_001385735	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
170199	chr3	183896201	183896400	+	0	NA	Intergenic	Intergenic	9500	NR_039650	100616127		NR_039650	ENSG00000263932	MIR4448	-	microRNA 4448	ncRNA
231343	chr9	130242821	130243800	+	0	NA	Intergenic	Intergenic	1923	NR_162140	113219459		NR_162140		MIR12126	-	microRNA 12126	ncRNA
65450	chr14	51739551	51739850	+	0	NA	Intergenic	Intergenic	22417	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
126233	chr2	27053771	27054130	+	0	NA	non-coding (NR_138023, exon 4 of 16)	non-coding (NR_138023, exon 4 of 16)	2282	NM_021831	60509		NM_021831	ENSG00000084693	AGBL5	CCP5|RP75	AGBL carboxypeptidase 5	protein-coding
164484	chr3	60001401	60001600	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	79409	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
231192	chr9	129926371	129926530	+	0	NA	intron (NM_001363755, intron 8 of 15)	MER20|DNA|hAT-Charlie	56845	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
212744	chr7	129916401	129916800	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	36360	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
147254	chr20	57426671	57427250	+	0	NA	Intergenic	Intergenic	-33904	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
82451	chr16	16364071	16364630	+	0	NA	intron (NR_146336, intron 20 of 34)	CpG	-4526	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
185821	chr5	132450821	132451150	+	0	NA	intron (NR_161242, intron 3 of 3)	MIRb|SINE|MIR	39788	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
213595	chr7	139385451	139385550	+	0	NA	intron (NM_016019, intron 2 of 9)	AluJr4|SINE|Alu	25606	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
92797	chr17	15998071	15998900	+	0	NA	intron (NM_001042698, intron 1 of 5)	intron (NM_001042698, intron 1 of 5)	1219	NM_001042697	125150		NM_001042697	ENSG00000214941	ZSWIM7	ODG10|SPGF71|SWS1	zinc finger SWIM-type containing 7	protein-coding
68470	chr14	87951501	87951700	+	0	NA	intron (NM_001201401, intron 9 of 15)	L1M4|LINE|L1	41582	NM_000153	2581		NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
129060	chr2	65071251	65071550	+	0	NA	intron (NM_015147, intron 2 of 6)	intron (NM_015147, intron 2 of 6)	14984	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
29496	chr10	70595501	70595700	+	0	NA	Intergenic	Intergenic	7141	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
101047	chr17	64809801	64810450	+	0	NA	intron (NR_024386, intron 4 of 10)	AluSx|SINE|Alu	11977	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
231049	chr9	129627921	129628280	+	0	NA	intron (NM_001286799, intron 1 of 3)	intron (NM_001286799, intron 1 of 3)	1656	NM_001286799	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
170924	chr3	194255321	194255900	+	0	NA	intron (NR_125402, intron 3 of 3)	intron (NR_125402, intron 3 of 3)	-5457	NR_125403	100505920		NR_125403		LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
149402	chr21	31165371	31165730	+	0	NA	intron (NM_001353694, intron 15 of 27)	MLT1A|LTR|ERVL-MaLR	-4610	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
196566	chr6	44125071	44125430	+	0	NA	intron (NM_001318767, intron 1 of 2)	intron (NM_001318767, intron 1 of 2)	1017	NM_001318770	64928		NM_032111	ENSG00000180992	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32|uL14m	mitochondrial ribosomal protein L14	protein-coding
166786	chr3	122508221	122508880	+	0	NA	intron (NM_002264, intron 1 of 13)	HAL1|LINE|L1	6389	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
121738	chr19	47738771	47738930	+	0	NA	intron (NM_014601, intron 5 of 5)	Helitron3Na_Mam|RC|Helitron	-6696	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
183181	chr5	75565801	75566000	+	0	NA	intron (NM_016218, intron 3 of 14)	L1PA7|LINE|L1	-45553	NM_001276713	728780		NM_001271529	ENSG00000189045	ANKDD1B	-	ankyrin repeat and death domain containing 1B	protein-coding
27574	chr10	32365851	32366200	+	0	NA	intron (NR_104163, intron 1 of 1)	AluSq|SINE|Alu	12744	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
220797	chr8	102658101	102659100	+	0	NA	intron (NR_160672, intron 1 of 4)	L2b|LINE|L2	2352	NR_160673	101927245		NR_160672	ENSG00000283959	LOC101927245	-	uncharacterized LOC101927245	ncRNA
107451	chr18	46397371	46398150	+	0	NA	intron (NM_001256758, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	63536	NM_001256758	494470		NM_152470	ENSG00000141622	ARK2C	ARKL2|RNF111L2|RNF165|lncAMPC	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C	protein-coding
23776	chr1	233281871	233282680	+	0	NA	intron (NM_014801, intron 1 of 33)	L2b|LINE|L2	13450	NM_001328607	80003		NM_014801	ENSG00000135749	PCNX2	PCNXL2	pecanex 2	protein-coding
172195	chr4	1251051	1251430	+	0	NA	promoter-TSS (NM_001377189)	promoter-TSS (NM_001377189)	-885	NM_001377192	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
116259	chr19	17622321	17622780	+	0	NA	intron (NM_001080421, intron 34 of 41)	intron (NM_001080421, intron 34 of 41)	65649	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
60439	chr13	41002551	41003200	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	16441	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
1568	chr1	3534751	3535550	+	0	NA	intron (NM_001409, intron 4 of 36)	intron (NM_001409, intron 4 of 36)	25640	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
153883	chr22	30283451	30283750	+	0	NA	Intergenic	Intergenic	5905	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
42532	chr11	71447451	71449300	+	0	NA	promoter-TSS (NM_001163817)	promoter-TSS (NM_001163817)	18	NM_001163817	1717		NM_001360	ENSG00000172893	DHCR7	SLOS	7-dehydrocholesterol reductase	protein-coding
55474	chr12	104694171	104694530	+	0	NA	intron (NM_018413, intron 2 of 2)	MIRb|SINE|MIR	102717	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
11061	chr1	85063471	85063830	+	0	NA	intron (NM_145172, intron 1 of 22)	intron (NM_145172, intron 1 of 22)	1323	NM_145172	126820		NM_145172	ENSG00000162643	DNAI3	DIC3|NYD-SP29|WDR63	dynein axonemal intermediate chain 3	protein-coding
201244	chr6	144036221	144036680	+	0	NA	intron (NM_001289040, intron 1 of 5)	intron (NM_001289040, intron 1 of 5)	18812	NM_001317159	5325		NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
163676	chr3	52233721	52233980	+	0	NA	intron (NM_007284, intron 2 of 8)	AluYc|SINE|Alu	5308	NM_007284	11344		NM_007284	ENSG00000247596	TWF2	A6RP|A6r|MSTP011|PTK9L	twinfilin actin binding protein 2	protein-coding
15069	chr1	148453401	148454380	+	0	NA	intron (NR_027468, intron 1 of 4)	intron (NR_027468, intron 1 of 4)	6030	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
138243	chr2	203013151	203013250	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1675	NM_001114132	65065		NM_198945	ENSG00000144426	NBEAL1	A530083I02Rik|ALS2CR16|ALS2CR17	neurobeachin like 1	protein-coding
41136	chr11	65581301	65582580	+	0	NA	exon (NM_001099409, exon 9 of 19)	exon (NM_001099409, exon 9 of 19)	5887	NM_001099409	254102		NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1 like 1	protein-coding
75767	chr15	68579321	68579850	+	0	NA	intron (NM_006091, intron 1 of 11)	CpG	592	NM_006091	10391		NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
123527	chr19	54266071	54266500	+	0	NA	Intergenic	Intergenic	-9012	NM_001081443	10990		NM_006840	ENSG00000105609	LILRB5	CD85C|LIR-8|LIR8	leukocyte immunoglobulin like receptor B5	protein-coding
138327	chr2	203781901	203782630	+	0	NA	Intergenic	Intergenic	75626	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
208329	chr7	66204501	66205880	+	0	NA	promoter-TSS (NM_003596)	promoter-TSS (NM_003596)	-144	NM_003596	8460		NM_003596	ENSG00000169902	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
212643	chr7	129496071	129496430	+	0	NA	Intergenic	Intergenic	-6281	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
178431	chr4	147794771	147795330	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	12455	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
222466	chr8	140027051	140027350	+	0	NA	intron (NR_164662, intron 16 of 22)	L2c|LINE|L2	73335	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
233068	chr9	137083051	137083330	+	0	NA	3' UTR (NM_207309, exon 9 of 9)	3' UTR (NM_207309, exon 9 of 9)	3627	NR_027447	100289341		NR_027447	ENSG00000268996	MAN1B1-DT	MAN1B1-AS1	MAN1B1 divergent transcript	ncRNA
206960	chr7	38268771	38268930	+	0	NA	intron (NM_001003806, intron 1 of 3)	intron (NM_001003806, intron 1 of 3)	4797	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
207275	chr7	43980801	43981000	+	0	NA	intron (NR_003655, intron 7 of 15)	AluSz|SINE|Alu	-16968	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
110725	chr19	2317301	2318280	+	0	NA	Intergenic	Intergenic	-9636	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
99492	chr17	50190751	50191980	+	0	NA	intron (NM_000088, intron 32 of 50)	intron (NM_000088, intron 32 of 50)	10266	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
100402	chr17	60389951	60390350	+	0	NA	intron (NM_032582, intron 1 of 33)	intron (NM_032582, intron 1 of 33)	1983	NM_032582	84669		NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding
156874	chr22	42088721	42089250	+	0	NA	intron (NM_002490, intron 1 of 2).2	intron (NM_002490, intron 1 of 2).2	1787	NM_002490	4700		NM_002490	ENSG00000184983	NDUFA6	B14|CI-B14|LYRM6|MC1DN33|NADHB14	NADH:ubiquinone oxidoreductase subunit A6	protein-coding
7626	chr1	35556551	35559160	+	0	NA	promoter-TSS (NM_001014839)	promoter-TSS (NM_001014839)	56	NM_014284	23154		NM_014284	ENSG00000020129	NCDN	NEDIES	neurochondrin	protein-coding
131942	chr2	99179051	99179900	+	0	NA	intron (NM_001320419, intron 1 of 5)	MIRb|SINE|MIR	1583	NM_138798	129531		NM_138798	ENSG00000158411	MITD1	-	microtubule interacting and trafficking domain containing 1	protein-coding
93772	chr17	20206101	20206300	+	0	NA	intron (NM_001033554, intron 2 of 5)	intron (NM_001033554, intron 2 of 5)	50128	NM_001033554	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
155123	chr22	37632801	37633500	+	0	NA	3' UTR (NM_001363771, exon 17 of 17)	3' UTR (NM_001363771, exon 17 of 17)	-6519	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
17349	chr1	156492101	156493280	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	-2003	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
138821	chr2	216350021	216350950	+	0	NA	intron (NM_020814, intron 1 of 3)	intron (NM_020814, intron 1 of 3)	21998	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
86820	chr16	67875421	67875680	+	0	NA	intron (NM_014329, intron 1 of 28)	intron (NM_014329, intron 1 of 28)	2498	NM_014329	23644		NM_014329	ENSG00000038358	EDC4	GE1|Ge-1|HEDL5|HEDLS|RCD-8|RCD8	enhancer of mRNA decapping 4	protein-coding
191322	chr6	6918571	6918730	+	0	NA	Intergenic	Intergenic	-189093	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
152348	chr22	20435421	20435680	+	0	NA	intron (NM_182895, intron 1 of 10)	L2a|LINE|L2	2275	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
220542	chr8	100699871	100700030	+	0	NA	Intergenic	Intergenic	3074	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
62207	chr13	98450601	98451330	+	0	NA	3' UTR (NM_005766, exon 27 of 27)	3' UTR (NM_005766, exon 27 of 27)	71160	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
32138	chr10	101250171	101250330	+	0	NA	Intergenic	L2a|LINE|L2	13300	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
17147	chr1	156193501	156194880	+	0	NA	promoter-TSS (NM_001377388)	promoter-TSS (NM_001377388)	86	NM_001286184	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
144907	chr20	36948601	36948800	+	0	NA	intron (NM_001363733, intron 1 of 15)	AluSc|SINE|Alu	3008	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
72003	chr15	25861821	25863000	+	0	NA	intron (NM_024490, intron 1 of 20)	CpG	792	NM_024490	57194		NM_024490	ENSG00000206190	ATP10A	ATP10C|ATPVA|ATPVC	ATPase phospholipid transporting 10A (putative)	protein-coding
71035	chr14	104781421	104781780	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	12001	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
169289	chr3	158329671	158329830	+	0	NA	intron (NM_016625, intron 5 of 9)	L1PA5|LINE|L1	-196958	NR_148407	110599565		NR_148407		UC.134	-	long non-coding RNA uc.134	ncRNA
93434	chr17	18569471	18569630	+	0	NA	intron (NR_036647, intron 12 of 16)	intron (NR_036647, intron 12 of 16)	-42704	NM_024974	80039		NM_024974	ENSG00000273018	FAM106A	-	family with sequence similarity 106 member A	ncRNA
118873	chr19	38668101	38668300	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	20551	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
119756	chr19	41286551	41286650	+	0	NA	intron (NM_144732, intron 7 of 14)	7SLRNA|srpRNA|srpRNA	21519	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
68609	chr14	89616421	89617400	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	2255	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
352	chr1	1009971	1010330	+	0	NA	Intergenic	AluSz|SINE|Alu	-3347	NM_005101	9636		NM_005101	ENSG00000187608	ISG15	G1P2|IFI15|IMD38|IP17|UCRP|hUCRP	ISG15 ubiquitin like modifier	protein-coding
225422	chr9	35065201	35065800	+	0	NA	intron (NM_001354927, intron 4 of 16)	intron (NM_001354927, intron 4 of 16)	6808	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
198947	chr6	110688621	110689550	+	0	NA	intron (NM_015076, intron 2 of 12)	L1PBa|LINE|L1	-125536	NM_001287215	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
32831	chr10	110012571	110013180	+	0	NA	intron (NM_016824, intron 1 of 14)	FLAM_A|SINE|Alu	-4494	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
33351	chr10	117162701	117163100	+	0	NA	intron (NR_121650, intron 1 of 1)	CpG	4874	NR_037436	100500893		NR_037436	ENSG00000266782	MIR3663	-	microRNA 3663	ncRNA
56001	chr12	110301551	110301800	+	0	NA	intron (NM_170665, intron 5 of 19)	L2|LINE|L2	20428	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
55732	chr12	108316321	108316780	+	0	NA	intron (NM_001142344, intron 1 of 2)	intron (NM_001142344, intron 1 of 2)	4112	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
160593	chr3	31223271	31223780	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-61738	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
211462	chr7	105094651	105094950	+	0	NA	intron (NM_182931, intron 15 of 26)	MER44A|DNA|TcMar-Tigger	80595	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
144657	chr20	36093021	36093980	+	0	NA	intron (NM_001258329, intron 1 of 22)	CpG	790	NM_177996	2036		NM_012156	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1 like 1	protein-coding
93252	chr17	17957071	17957230	+	0	NA	intron (NM_001082968, intron 1 of 14)	AluJr4|SINE|Alu	15250	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
161696	chr3	43499051	43499450	+	0	NA	intron (NM_001346467, intron 12 of 13)	L2c|LINE|L2	122676	NM_001346467	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
199333	chr6	113873201	113873430	+	0	NA	promoter-TSS (NR_038863)	promoter-TSS (NR_038863)	32	NR_038863	285758		NR_038863	ENSG00000227502	MROCKI	LINC01268|ROCKI	MARCKS cis regulating lncRNA promoter of cytokines and inflammation	ncRNA
43480	chr11	78202551	78203900	+	0	NA	intron (NM_020798, intron 6 of 10)	intron (NM_020798, intron 6 of 10)	14306	NM_020798	57558		NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
31493	chr10	96651921	96652750	+	0	NA	intron (NM_152309, intron 4 of 16)	AluY|SINE|Alu	-65323	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
77200	chr15	80804871	80805230	+	0	NA	intron (NM_018689, intron 1 of 28)	intron (NM_018689, intron 1 of 28)	25680	NM_018689	57214		NM_018689	ENSG00000103888	CEMIP	CCSP1|CEMIP1|HYBID|KIAA1199|TMEM2L	cell migration inducing hyaluronidase 1	protein-coding
154528	chr22	36143101	36144080	+	0	NA	intron (NM_145640, intron 2 of 2)	intron (NM_145640, intron 2 of 2)	17165	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
50303	chr12	46449471	46449830	+	0	NA	intron (NR_125381, intron 2 of 2)	intron (NR_125381, intron 2 of 2)	65543	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
52866	chr12	57157871	57158230	+	0	NA	intron (NM_002332, intron 10 of 88)	L2a|LINE|L2	-10431	NR_131939	105751187		NR_131938	ENSG00000259125	LRP1-AS	-	LRP1 antisense RNA	ncRNA
151257	chr21	45322271	45323230	+	0	NA	Intergenic	Intergenic	19240	NR_103811	388830		NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
185243	chr5	123425901	123426100	+	0	NA	Intergenic	Intergenic	-2158	NM_001375408	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
48352	chr12	9402601	9403100	+	0	NA	intron (NR_144634, intron 2 of 8)	intron (NR_144634, intron 2 of 8)	4564	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
161940	chr3	46110901	46111600	+	0	NA	Intergenic	LTR71A|LTR|ERV1	-25406	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
51298	chr12	51246221	51246850	+	0	NA	3' UTR (NM_001136269, exon 4 of 4)	3' UTR (NM_001136269, exon 4 of 4)	7709	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
145771	chr20	45358401	45358600	+	0	NA	Intergenic	Intergenic	-3449	NM_001197129	90196		NM_033542	ENSG00000204070	SYS1	C20orf169|dJ453C12.4|dJ453C12.4.1	SYS1 golgi trafficking protein	protein-coding
228290	chr9	98095871	98096430	+	0	NA	intron (NM_014788, intron 3 of 5)	intron (NM_014788, intron 3 of 5)	23072	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
25918	chr10	11318101	11318300	+	0	NA	non-coding (NR_126062, exon 3 of 3)	non-coding (NR_126062, exon 3 of 3)	26474	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
129119	chr2	65230471	65231230	+	0	NA	intron (NM_005722, intron 1 of 8)	AluSx1|SINE|Alu	3019	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
185327	chr5	126794651	126794950	+	0	NA	intron (NR_134488, intron 1 of 11)	intron (NR_134488, intron 1 of 11)	17664	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
217544	chr8	29320171	29320900	+	0	NA	Intergenic	Intergenic	28270	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
23256	chr1	227849321	227849730	+	0	NA	Intergenic	L1MC5|LINE|L1	33808	NM_183062	339501		NM_183062	ENSG00000185888	PRSS38	MPN2	serine protease 38	protein-coding
166264	chr3	112462971	112463600	+	0	NA	TTS (NM_181780)	TTS (NM_181780)	36187	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
82110	chr16	14631851	14633600	+	0	NA	promoter-TSS (NM_001330500)	promoter-TSS (NM_001330500)	-226	NM_001330500	51283		NM_016561	ENSG00000103429	BFAR	BAR|RNF47	bifunctional apoptosis regulator	protein-coding
9965	chr1	54803721	54803980	+	0	NA	Intergenic	Intergenic	-2213	NM_152607	163747		NM_152607	ENSG00000162398	CIMAP2	C1orf177|LEM|LEXM	ciliary microtubule associated protein 2	protein-coding
155770	chr22	39234901	39235680	+	0	NA	intron (NM_033016, intron 2 of 6)	intron (NM_033016, intron 2 of 6)	5619	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
49300	chr12	21437321	21439000	+	0	NA	5' UTR (NM_001350912, exon 1 of 12)	5' UTR (NM_001350912, exon 1 of 12)	245	NM_001350912	79912		NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
233172	chr9	137185201	137185650	+	0	NA	intron (NM_013366, intron 3 of 12)	intron (NM_013366, intron 3 of 12)	3135	NM_013366	29882		NM_013366	ENSG00000176248	ANAPC2	APC2	anaphase promoting complex subunit 2	protein-coding
106112	chr18	9175251	9175780	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	37952	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
211575	chr7	105689051	105689350	+	0	NA	intron (NM_001385596, intron 3 of 11)	intron (NM_001385596, intron 3 of 11)	-10038	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
178396	chr4	147590321	147590630	+	0	NA	Intergenic	Intergenic	-26922	NM_018241	55751		NM_018241	ENSG00000164168	TMEM184C	SLC51C3|TMEM34	transmembrane protein 184C	protein-coding
193740	chr6	31262221	31262680	+	0	NA	Intergenic	MER4CL34|LTR|ERV1	9642	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
7208	chr1	32290301	32290780	+	0	NA	Intergenic	Intergenic	-1543	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
70244	chr14	101458721	101459350	+	0	NA	Intergenic	CpG	16959	NR_135240	100507277		NR_135240	ENSG00000259082	LINC02314	-	long intergenic non-protein coding RNA 2314	ncRNA
233404	chr9	137566851	137567450	+	0	NA	intron (NM_001346386, intron 4 of 7)	intron (NM_001346386, intron 4 of 7)	11442	NM_001346373	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
174191	chr4	36350221	36350530	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	68759	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
149620	chr21	33393751	33393850	+	0	NA	Intergenic	Intergenic	-9096	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
61119	chr13	48497951	48498400	+	0	NA	intron (NR_147985, intron 10 of 11)	intron (NR_147985, intron 10 of 11)	34905	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
65111	chr14	44710571	44710730	+	0	NA	Intergenic	L1HS|LINE|L1	88476	NR_146457	101927351		NR_146457		LINC02302	-	long intergenic non-protein coding RNA 2302	ncRNA
110892	chr19	2702521	2703780	+	0	NA	promoter-TSS (NM_052847)	promoter-TSS (NM_052847)	-456	NM_052847	2788		NM_052847	ENSG00000176533	GNG7	HG3B	G protein subunit gamma 7	protein-coding
185570	chr5	131383141	131383630	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	119332	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
150812	chr21	43957101	43957380	+	0	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	31842	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
45372	chr11	118295651	118296550	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-8630	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
159621	chr3	15274271	15274630	+	0	NA	intron (NM_004844, intron 3 of 8)	MSTA|LTR|ERVL-MaLR	20266	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
168572	chr3	148993551	148993950	+	0	NA	intron (NM_001184720, intron 1 of 6)	intron (NM_001184720, intron 1 of 6)	2210	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
65818	chr14	54882971	54883300	+	0	NA	intron (NM_001024024, intron 1 of 6)	AluSg|SINE|Alu	-4942	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
89236	chr16	88638201	88638880	+	0	NA	promoter-TSS (NM_013278)	promoter-TSS (NM_013278)	-32	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
91691	chr17	6272351	6272450	+	0	NA	Intergenic	Intergenic	162721	NM_001033054	23746		NM_014336	ENSG00000129221	AIPL1	AIPL2|LCA4	aryl hydrocarbon receptor interacting protein like 1	protein-coding
95699	chr17	38453001	38454480	+	0	NA	intron (NM_001199417, intron 1 of 23).2	CpG	25276	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
178368	chr4	146350001	146350530	+	0	NA	intron (NM_001317816, intron 4 of 10)	L1PA2|LINE|L1	-58318	NR_107003	102465837		NR_107003	ENSG00000278438	MIR7849	hsa-mir-7849	microRNA 7849	ncRNA
79011	chr16	25901	26700	+	0	NA	Intergenic	Intergenic	3384	NR_130735	100132169		NR_130735	ENSG00000231439	WASIR2	NCRNA00286A	WASH and IL9R antisense RNA 2	ncRNA
45901	chr11	120337951	120338050	+	0	NA	intron (NM_015313, intron 1 of 40)	intron (NM_015313, intron 1 of 40)	1587	NM_015313	23365		NM_015313	ENSG00000196914	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor 12	protein-coding
41909	chr11	67276811	67278430	+	0	NA	intron (NM_001619, intron 2 of 20)	intron (NM_001619, intron 2 of 20)	11147	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
5038	chr1	24521401	24521600	+	0	NA	intron (NM_001251985, intron 1 of 1)	intron (NM_001251985, intron 1 of 1)	7186	NM_001251982	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
163649	chr3	52156101	52156500	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-1877	NM_001161581	25886		NM_015426	ENSG00000164087	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
146524	chr20	49934721	49935330	+	0	NA	Intergenic	L1MB3|LINE|L1	-1372	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
127894	chr2	46224621	46225080	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-72557	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
120088	chr19	42124051	42124150	+	0	NA	intron (NM_001247994, intron 1 of 13)	AluJb|SINE|Alu	8346	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
184728	chr5	109558451	109558650	+	0	NA	Intergenic	L2c|LINE|L2	-130816	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
226803	chr9	77168451	77168750	+	0	NA	Intergenic	Intergenic	-8845	NM_015186	23230		NM_015186	ENSG00000197969	VPS13A	BLTP5A|CHAC|CHOREIN	vacuolar protein sorting 13 homolog A	protein-coding
200126	chr6	130220201	130220800	+	0	NA	intron (NM_001258275, intron 3 of 13)	L4_B_Mam|LINE|RTE-X	2451	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
33896	chr10	124473021	124473530	+	0	NA	intron (NM_001167880, intron 1 of 5)	intron (NM_001167880, intron 1 of 5)	11452	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
235153	chrX	41113921	41114500	+	0	NA	intron (NM_001039590, intron 1 of 44)	Tigger2b_Pri|DNA|TcMar-Tigger	28765	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
29285	chr10	69227251	69227750	+	0	NA	intron (NM_025130, intron 2 of 17)	(TC)n|Simple_repeat|Simple_repeat	4990	NR_120648	101928994		NR_120648	ENSG00000229261	LOC101928994	-	uncharacterized LOC101928994	ncRNA
100620	chr17	63571921	63572180	+	0	NA	intron (NR_073585, intron 1 of 7)	intron (NR_073585, intron 1 of 7)	21573	NR_073585	10238		NM_005828	ENSG00000136485	DCAF7	AN11|HAN11|SWAN-1|WDR68	DDB1 and CUL4 associated factor 7	protein-coding
18448	chr1	161533121	161533380	+	0	NA	Intergenic	LTR25|LTR|ERV1	8710	NM_002155	3310		NM_002155	ENSG00000173110	HSPA6	HSP70B'	heat shock protein family A (Hsp70) member 6	protein-coding
231076	chr9	129698171	129698330	+	0	NA	intron (NM_016307, intron 1 of 3)	intron (NM_016307, intron 1 of 3)	20456	NR_132102	101929437		NR_132102	ENSG00000236024	PRRX2-AS1	-	PRRX2 antisense RNA 1	ncRNA
121390	chr19	46933201	46933600	+	0	NA	intron (NM_004491, intron 2 of 6)	AluJb|SINE|Alu	72403	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
68063	chr14	75257151	75258130	+	0	NA	Intergenic	Intergenic	-21188	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
173224	chr4	6911501	6911880	+	0	NA	intron (NM_020773, intron 1 of 13)	intron (NM_020773, intron 1 of 13)	1864	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
78267	chr15	90852071	90852230	+	0	NA	Intergenic	Intergenic	-16438	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
40416	chr11	64162921	64163180	+	0	NA	intron (NM_014067, intron 1 of 10)	AluSc8|SINE|Alu	3063	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
199039	chr6	111461801	111462380	+	0	NA	intron (NM_001286431, intron 3 of 34)	intron (NM_001286431, intron 3 of 34)	21128	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
72669	chr15	38538021	38539350	+	0	NA	intron (NM_001128602, intron 2 of 15)	MIR|SINE|MIR	26129	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
24688	chr1	247208921	247209580	+	0	NA	Intergenic	Intergenic	-7190	NR_037480	100500849		NR_037480	ENSG00000283881	MIR3916	mir-3916	microRNA 3916	ncRNA
117529	chr19	20444371	20444530	+	0	NA	Intergenic	LTR70|LTR|ERV1	-19485	NR_036455	664701		NM_001039884		ZNF826P	ZNF826	zinc finger protein 826, pseudogene	pseudo
161668	chr3	43343321	43344130	+	0	NA	intron (NM_017719, intron 6 of 6)	intron (NM_017719, intron 6 of 6)	8237	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
168465	chr3	143047671	143048180	+	0	NA	intron (NM_001080415, intron 24 of 27)	intron (NM_001080415, intron 24 of 27)	46355	NM_001320222	23350		NM_001080415	ENSG00000163714	U2SURP	SR140|fSAPa	U2 snRNP associated SURP domain containing	protein-coding
3962	chr1	18647971	18648330	+	0	NA	intron (NM_001135254, intron 4 of 8)	intron (NM_001135254, intron 4 of 8)	17304	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
206428	chr7	32702971	32703230	+	0	NA	intron (NR_036680, intron 2 of 16)	L1PA2|LINE|L1	16068	NR_036680	100129460		NR_036680		DPY19L1P1	-	DPY19L1 pseudogene 1	pseudo
57686	chr12	122842821	122843080	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	7493	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
61305	chr13	50256601	50257100	+	0	NA	intron (NR_109974, intron 2 of 6)	L1PA6|LINE|L1	84832	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
81887	chr16	11688751	11689400	+	0	NA	intron (NR_136674, intron 5 of 8)	intron (NR_136674, intron 5 of 8)	20620	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
200257	chr6	132491701	132491900	+	0	NA	intron (NR_137169, intron 2 of 8)	L2a|LINE|L2	20983	NM_001326578	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
130259	chr2	84858821	84859330	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	22009	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
169191	chr3	156711621	156712200	+	0	NA	Intergenic	AluSx1|SINE|Alu	35246	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
20678	chr1	200471101	200471400	+	0	NA	Intergenic	Intergenic	-61214	NM_001281293	23528		NM_012482	ENSG00000162702	ZNF281	GZP1|ZBP-99|ZBP99|ZNP-99	zinc finger protein 281	protein-coding
161652	chr3	43321551	43322130	+	0	NA	intron (NM_017719, intron 3 of 6)	intron (NM_017719, intron 3 of 6)	30122	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
35447	chr11	1452601	1453000	+	0	NA	intron (NM_001256630, intron 15 of 19)	intron (NM_001256630, intron 15 of 19)	28086	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
168203	chr3	141233471	141233900	+	0	NA	intron (NM_001282728, intron 1 of 6)	intron (NM_001282728, intron 1 of 6)	1860	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
28344	chr10	46733971	46734350	+	0	NA	Intergenic	Intergenic	-52573	NR_003611	399761		NM_001040053	ENSG00000291069	BMS1P1	BMS1LP1|BMS1LP5|BMS1P5	BMS1 pseudogene 1	pseudo
63853	chr14	21534621	21535050	+	0	NA	intron (NR_111966, intron 1 of 2)	intron (NR_111966, intron 1 of 2)	2286	NM_001291446	6297		NM_005407	ENSG00000165821	SALL2	COLB|HSAL2|Sal-2|ZNF795|p150(Sal2)	spalt like transcription factor 2	protein-coding
62333	chr13	99075271	99076550	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	10784	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
165288	chr3	75785021	75785880	+	0	NA	promoter-TSS (NM_001324028)	promoter-TSS (NM_001324028)	99	NM_001290208	100131827		NM_001128223	ENSG00000227124	ZNF717	OB1|X17|ZNF838	zinc finger protein 717	protein-coding
52670	chr12	56342501	56343350	+	0	NA	3' UTR (NM_005419, exon 24 of 24)	3' UTR (NM_005419, exon 24 of 24)	4041	NM_016584	51561		NM_016584	ENSG00000110944	IL23A	IL-23|IL-23A|IL23P19|P19|SGRF	interleukin 23 subunit alpha	protein-coding
235346	chrX	44255771	44255930	+	0	NA	intron (NM_025184, intron 4 of 14)	L1PA7|LINE|L1	87822	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
119792	chr19	41323421	41324000	+	0	NA	3' UTR (NM_052848, exon 5 of 5)	3' UTR (NM_052848, exon 5 of 5)	13233	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
89933	chr16	89732401	89733130	+	0	NA	intron (NR_110122, intron 6 of 10)	intron (NR_110122, intron 6 of 10)	11228	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
159712	chr3	15667451	15668000	+	0	NA	non-coding (NR_146111, exon 28 of 28)	non-coding (NR_146111, exon 28 of 28)	29646	NR_036085	100422990		NR_036085	ENSG00000264354	MIR3134	-	microRNA 3134	ncRNA
50237	chr12	46239351	46239650	+	0	NA	intron (NM_001278387, intron 4 of 17)	AluSz|SINE|Alu	27016	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
107332	chr18	45671571	45671730	+	0	NA	intron (NM_001242692, intron 17 of 20)	intron (NM_001242692, intron 17 of 20)	-52531	NM_001308278	6563		NM_015865	ENSG00000141469	SLC14A1	HUT11|HUT11A|HsT1341|JK|Jk(a)|Jk(b)|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 member 1 (Kidd blood group)	protein-coding
182995	chr5	72244871	72245180	+	0	NA	intron (NM_001286748, intron 4 of 11)	intron (NM_001286748, intron 4 of 11)	65238	NM_001324255	4131		NM_005909	ENSG00000131711	MAP1B	DFNA83|FUTSCH|MAP5|PPP1R102|PVNH9	microtubule associated protein 1B	protein-coding
79508	chr16	795171	796280	+	0	NA	exon (NM_022092, exon 17 of 22)	exon (NM_022092, exon 17 of 22)	5009	NM_016541	51764		NM_016541	ENSG00000127588	GNG13	G(gamma)13|HG3J|h2-35	G protein subunit gamma 13	protein-coding
48221	chr12	8182121	8182580	+	0	NA	intron (NR_026788, intron 1 of 7)	intron (NR_026788, intron 1 of 7)	2141	NR_026788	440078		NR_026788	ENSG00000226711	FAM66C	-	family with sequence similarity 66 member C	ncRNA
173981	chr4	26169651	26169830	+	0	NA	intron (NM_001374401, intron 1 of 11)	L1PA3|LINE|L1	6282	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
161902	chr3	45974251	45975030	+	0	NA	intron (NM_024513, intron 5 of 17)	intron (NM_024513, intron 5 of 17)	21184	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
149054	chr21	15065701	15066530	+	0	NA	Intergenic	Intergenic	-1115	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
195974	chr6	41963501	41963700	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-21752	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
127260	chr2	38703521	38704180	+	0	NA	intron (NM_138801, intron 4 of 6)	AluSx|SINE|Alu	37736	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
126975	chr2	36353371	36353600	+	0	NA	Intergenic	Intergenic	2085	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
153022	chr22	23233901	23234400	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-28617	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
197167	chr6	59610901	59611300	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1649654	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
180124	chr5	1314601	1314830	+	0	NA	Intergenic	Intergenic	-5338	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
7297	chr1	32398051	32398350	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3759	NM_001143889	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
86059	chr16	57585301	57585900	+	0	NA	Intergenic	L1MB7|LINE|L1	-34138	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
33222	chr10	114084171	114085180	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	40809	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
178352	chr4	145938101	145939530	+	0	NA	promoter-TSS (NM_001306215)	promoter-TSS (NM_001306215)	8	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
5437	chr1	25570821	25571080	+	0	NA	Intergenic	MIRb|SINE|MIR	27344	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
45130	chr11	117188321	117188750	+	0	NA	intron (NM_001040455, intron 12 of 25)	intron (NM_001040455, intron 12 of 25)	9792	NM_001040455	51092		NM_015996	ENSG00000149577	SIDT2	CGI-40	SID1 transmembrane family member 2	protein-coding
59148	chr13	21529351	21530050	+	0	NA	intron (NM_152726, intron 4 of 11)	MIRb|SINE|MIR	-70330	NM_001286638	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
93321	chr17	18184501	18185250	+	0	NA	exon (NM_017758, exon 1 of 4)	exon (NM_017758, exon 1 of 4)	1047	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
209075	chr7	74791501	74792480	+	0	NA	Intergenic	MIRb|SINE|MIR	18028	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
88524	chr16	85371071	85371230	+	0	NA	Intergenic	Intergenic	-64825	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
237980	chrX	134254051	134254150	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	16887	NM_001353453	347475		NM_001101357	ENSG00000203952	CCDC160	-	coiled-coil domain containing 160	protein-coding
136725	chr2	181188951	181189530	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	65403	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
18579	chr1	164560151	164560250	+	0	NA	intron (NM_001353130, intron 1 of 7)	intron (NM_001353130, intron 1 of 7)	478	NM_001353130	5087		NM_002585	ENSG00000185630	PBX1	CAKUHED	PBX homeobox 1	protein-coding
73412	chr15	43068021	43068480	+	0	NA	intron (NM_174916, intron 5 of 46)	AluJb|SINE|Alu	37788	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
125118	chr2	9781951	9783400	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-60767	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
14118	chr1	120935871	120936850	+	0	NA	intron (NR_109754, intron 1 of 2)	AluSx1|SINE|Alu	-6240	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
181279	chr5	39283121	39283660	+	0	NA	TTS (NM_001737)	TTS (NM_001737)	-12741	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
213636	chr7	139648671	139649630	+	0	NA	intron (NM_022740, intron 2 of 14)	intron (NM_022740, intron 2 of 14)	125465	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
59841	chr13	30460401	30460600	+	0	NA	3' UTR (NM_002128, exon 5 of 5)	3' UTR (NM_002128, exon 5 of 5)	3827	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
1959	chr1	6584021	6584700	+	0	NA	intron (NM_005341, intron 3 of 10)	MER3|DNA|hAT-Charlie	4366	NM_001278647	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
157482	chr22	45308471	45308630	+	0	NA	promoter-TSS (NM_001104595)	promoter-TSS (NM_001104595)	-410	NR_146323	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
113130	chr19	8319651	8319980	+	0	NA	intron (NM_005001, intron 2 of 3)	L2a|LINE|L2	1560	NM_005001	4701		NM_005001	ENSG00000267855	NDUFA7	B14.5a|CI-B14.5a	NADH:ubiquinone oxidoreductase subunit A7	protein-coding
100054	chr17	58092171	58092330	+	0	NA	3' UTR (NM_080677, exon 3 of 3)	3' UTR (NM_080677, exon 3 of 3)	8831	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
220500	chr8	100563271	100563430	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-3591	NM_001270377	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
95184	chr17	35187971	35188750	+	0	NA	3' UTR (NM_001308281, exon 17 of 17)	3' UTR (NM_001308281, exon 17 of 17)	6033	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
14811	chr1	146279721	146280750	+	0	NA	Intergenic	Intergenic	-17538	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
13661	chr1	116556171	116557530	+	0	NA	intron (NR_026665, intron 1 of 5)	MER102a|DNA|hAT-Charlie	3261	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
10530	chr1	66954521	66954980	+	0	NA	intron (NM_001077702, intron 5 of 15)	AluSz6|SINE|Alu	24494	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
20367	chr1	197926671	197927030	+	0	NA	intron (NM_020204, intron 3 of 4)	intron (NM_020204, intron 3 of 4)	9478	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
36688	chr11	8686351	8686450	+	0	NA	TTS (NR_002977)	TTS (NR_002977)	961	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
121103	chr19	45926501	45926900	+	0	NA	Intergenic	AluSg4|SINE|Alu	-11922	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
192069	chr6	16640251	16640700	+	0	NA	intron (NM_000332, intron 4 of 8)	AluY|SINE|Alu	119709	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
172514	chr4	2266821	2267280	+	0	NA	Intergenic	Intergenic	-4941	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
40159	chr11	62878101	62878500	+	0	NA	intron (NM_001012662, intron 3 of 11)	AluJo|SINE|Alu	-2596	NM_001013251	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
56382	chr12	113175601	113176000	+	0	NA	intron (NM_024072, intron 7 of 19)	AluYm1|SINE|Alu	9678	NM_024072	79039		NM_024072	ENSG00000123064	DDX54	DP97	DEAD-box helicase 54	protein-coding
212423	chr7	128292451	128292550	+	0	NA	Intergenic	L1PA3|LINE|L1	51222	NM_000230	3952		NM_000230	ENSG00000174697	LEP	LEPD|OB|OBS	leptin	protein-coding
174289	chr4	38335871	38336030	+	0	NA	Intergenic	AluY|SINE|Alu	-30964	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
166890	chr3	124584221	124585480	+	0	NA	exon (NM_001323000, exon 1 of 15)	exon (NM_001323000, exon 1 of 15)	191	NM_001322997	8997		NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|KALNC2|TRAD	kalirin RhoGEF kinase	protein-coding
232471	chr9	136203851	136204300	+	0	NA	promoter-TSS (NM_014564)	promoter-TSS (NM_014564)	-886	NM_014564	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
142972	chr20	19976871	19977030	+	0	NA	intron (NM_001242581, intron 8 of 11)	intron (NM_001242581, intron 8 of 11)	-40340	NM_181528	51126		NM_016100	ENSG00000173418	NAA20	MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein-coding
151126	chr21	44890651	44890750	+	0	NA	intron (NM_001127491, intron 11 of 15)	intron (NM_001127491, intron 11 of 15)	-16797	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
54793	chr12	94279901	94280550	+	0	NA	intron (NM_005761, intron 22 of 30)	intron (NM_005761, intron 22 of 30)	17606	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
62654	chr13	102395801	102396400	+	0	NA	TTS (NR_036487)	TTS (NR_036487)	1522	NR_036487	283481		NR_036487	ENSG00000272143	FGF14-AS2	-	FGF14 antisense RNA 2	ncRNA
192363	chr6	24668551	24669030	+	0	NA	intron (NM_018473, intron 1 of 2)	MER51A|LTR|ERV1	1713	NM_018473	55856		NM_018473	ENSG00000112304	ACOT13	HT012|PNAS-27|THEM2	acyl-CoA thioesterase 13	protein-coding
110856	chr19	2607551	2609300	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-22290	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
228864	chr9	112335471	112335700	+	0	NA	Intergenic	Intergenic	-1921	NM_001163790	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
207933	chr7	50783351	50783450	+	0	NA	promoter-TSS (NM_001350814)	promoter-TSS (NM_001350814)	-504	NM_001371009	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
94845	chr17	31493001	31493600	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	5192	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
213114	chr7	131238121	131239080	+	0	NA	intron (NM_001145354, intron 2 of 18)	MLT1J2|LTR|ERVL-MaLR	89179	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
105871	chr18	3209871	3210230	+	0	NA	intron (NM_019856, intron 2 of 36)	MIRb|SINE|MIR	9918	NM_019856	8736		NM_003803	ENSG00000101605	MYOM1	SKELEMIN	myomesin 1	protein-coding
56518	chr12	116559301	116560950	+	0	NA	intron (NM_001085481, intron 1 of 1)	intron (NM_001085481, intron 1 of 1)	744	NM_001085481	643246		NM_001085481	ENSG00000258102	MAP1LC3B2	ATG8G	microtubule associated protein 1 light chain 3 beta 2	protein-coding
190065	chr5	177605951	177606850	+	0	NA	intron (NM_007255, intron 2 of 5)	L2a|LINE|L2	6268	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
15559	chr1	150550321	150550700	+	0	NA	intron (NM_001378596, intron 2 of 18)	intron (NM_001378596, intron 2 of 18)	1102	NM_025008	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
11551	chr1	91021601	91023130	+	0	NA	promoter-TSS (NM_016620)	promoter-TSS (NM_016620)	-110	NM_032186	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
203365	chr6	170398571	170399030	+	0	NA	intron (NM_032448, intron 9 of 10)	intron (NM_032448, intron 9 of 10)	68039	NR_039787	100616430		NR_039787	ENSG00000266245	MIR4644	-	microRNA 4644	ncRNA
153944	chr22	30341571	30341830	+	0	NA	exon (NM_005877, exon 7 of 16)	exon (NM_005877, exon 7 of 16)	-14759	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
4473	chr1	21406751	21406850	+	0	NA	Intergenic	L1MB5|LINE|L1	-33337	NM_001377492	84224		NM_032264	ENSG00000142794	NBPF3	AE2	NBPF member 3	protein-coding
77889	chr15	89112221	89112780	+	0	NA	intron (NM_007011, intron 5 of 14)	intron (NM_007011, intron 5 of 14)	24044	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
132255	chr2	102592771	102592930	+	0	NA	Intergenic	Intergenic	-26703	NM_003048	6549		NM_003048	ENSG00000115616	SLC9A2	NHE2	solute carrier family 9 member A2	protein-coding
33714	chr10	121754301	121754700	+	0	NA	intron (NR_110006, intron 9 of 9)	L1MC4|LINE|L1	-156042	NM_022970	2263		NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
189512	chr5	173329371	173329730	+	0	NA	promoter-TSS (NM_003714)	promoter-TSS (NM_003714)	-47	NM_003714	8614		NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
37516	chr11	18587451	18589430	+	0	NA	intron (NM_001261382, intron 1 of 10)	intron (NM_001261382, intron 1 of 10)	294	NM_001261384	55293		NM_018314	ENSG00000151116	UEVLD	ATTP|UEV3	UEV and lactate/malate dehyrogenase domains	protein-coding
229391	chr9	121181051	121181150	+	0	NA	3' UTR (NM_016322, exon 8 of 8)	3' UTR (NM_016322, exon 8 of 8)	-20383	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
201812	chr6	150013121	150013650	+	0	NA	Intergenic	Intergenic	-8241	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
76523	chr15	75065401	75065730	+	0	NA	Intergenic	HERVP71A-int|LTR|ERV1	22279	NM_001301105	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
211458	chr7	105088701	105089480	+	0	NA	intron (NM_182931, intron 13 of 26)	intron (NM_182931, intron 13 of 26)	74885	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
33675	chr10	119890501	119890700	+	0	NA	Intergenic	LTR12|LTR|ERV1	-2130	NR_037771	11196		NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A|iPLA1A|iPLA1beta	SEC23 interacting protein	protein-coding
218655	chr8	57252571	57252930	+	0	NA	Intergenic	Intergenic	-8476	NR_038874	286177		NR_038874	ENSG00000253614	LOC286177	-	uncharacterized LOC286177	ncRNA
193702	chr6	31136151	31136450	+	0	NA	intron (NM_014068, intron 3 of 5).5	AluSx|SINE|Alu	2766	NM_014069	170680		NM_014069	ENSG00000204538	PSORS1C2	C6orf17|SPR1	psoriasis susceptibility 1 candidate 2	protein-coding
180999	chr5	35823471	35824380	+	0	NA	Intergenic	AluSz|SINE|Alu	-32966	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
195038	chr6	35484221	35484480	+	0	NA	intron (NM_003214, intron 3 of 12)	intron (NM_003214, intron 3 of 12)	12729	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
52521	chr12	56082951	56083480	+	0	NA	intron (NM_001005915, intron 1 of 2)	intron (NM_001005915, intron 1 of 2)	3050	NM_001982	2065		NM_001982	ENSG00000065361	ERBB3	ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|VSCN1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3	erb-b2 receptor tyrosine kinase 3	protein-coding
23953	chr1	235133051	235133680	+	0	NA	intron (NR_144490, intron 9 of 9)	L1ME4c|LINE|L1	-4528	NM_014765	9804		NM_014765	ENSG00000173726	TOMM20	MAS20|MOM19|TOM20	translocase of outer mitochondrial membrane 20	protein-coding
61456	chr13	52070971	52071130	+	0	NA	intron (NM_001365552, intron 20 of 23)	MIR|SINE|MIR	46359	NM_021645	9724		NM_021645	ENSG00000253797	UTP14C	2700066J21Rik|KIAA0266|UTP14B	UTP14C small subunit processome component	protein-coding
222881	chr8	142773401	142773630	+	0	NA	3' UTR (NM_001356370, exon 4 of 4)	3' UTR (NM_001356370, exon 4 of 4)	3016	NM_001356370	66004		NM_177457	ENSG00000180155	LYNX1	-	Ly6/neurotoxin 1	protein-coding
208882	chr7	73835851	73836700	+	0	NA	intron (NM_152559, intron 5 of 5)	SVA_F|Retroposon|SVA	5279	NM_001305	1364		NM_001305	ENSG00000189143	CLDN4	CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R	claudin 4	protein-coding
218905	chr8	60747071	60747230	+	0	NA	intron (NM_001316690, intron 1 of 4)	AluSx1|SINE|Alu	5891	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
171561	chr3	196932621	196933130	+	0	NA	3' UTR (NM_152699, exon 10 of 10)	3' UTR (NM_152699, exon 10 of 10)	-7002	NR_046630	100874001		NR_046630		NCBP2-AS1	-	NCBP2 antisense RNA 1	ncRNA
198819	chr6	109067771	109068080	+	0	NA	intron (NM_014454, intron 1 of 9)	LTR33|LTR|ERVL	26921	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
229897	chr9	126523321	126524500	+	0	NA	Intergenic	L1MB3|LINE|L1	-90018	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
93091	chr17	17660851	17661150	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	16688	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
177613	chr4	121137901	121138500	+	0	NA	intron (NM_001128843, intron 12 of 12)	intron (NM_001128843, intron 12 of 12)	26121	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
218532	chr8	53863251	53863550	+	0	NA	intron (NM_001286674, intron 1 of 2)	intron (NM_001286674, intron 1 of 2)	11605	NM_001286675	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
184991	chr5	114858101	114858300	+	0	NA	Intergenic	Intergenic	-84787	NR_130785	101927078		NR_130785		LOC101927078	-	uncharacterized LOC101927078	ncRNA
165794	chr3	105804071	105804830	+	0	NA	intron (NM_001321811, intron 3 of 16)	AluSg4|SINE|Alu	63141	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
122030	chr19	48627071	48627950	+	0	NA	intron (NM_001204159, intron 3 of 6)	intron (NM_001204159, intron 3 of 6)	2481	NM_001204160	56848		NM_020126	ENSG00000063176	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding
71804	chr15	21743771	21744600	+	0	NA	Intergenic	Intergenic	-8186	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
157995	chr22	49856951	49857050	+	0	NA	intron (NM_014838, intron 1 of 1)	intron (NM_014838, intron 1 of 1)	3156	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
112350	chr19	5950821	5951080	+	0	NA	intron (NM_007320, intron 2 of 15)	intron (NM_007320, intron 2 of 15)	27190	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
117915	chr19	32973721	32973980	+	0	NA	intron (NM_152266, intron 3 of 4)	AluSx|SINE|Alu	1608	NM_001300978	91442		NM_152266	ENSG00000131944	FAAP24	C19orf40	FA core complex associated protein 24	protein-coding
233052	chr9	137066021	137066780	+	0	NA	intron (NM_178448, intron 1 of 5)	intron (NM_178448, intron 1 of 5)	4157	NM_178448	89958		NM_178448	ENSG00000186193	SAPCD2	C9orf140|p42.3	suppressor APC domain containing 2	protein-coding
2511	chr1	9700571	9700930	+	0	NA	intron (NM_001350234, intron 2 of 23)	L2a|LINE|L2	9283	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
179484	chr4	184538951	184539430	+	0	NA	Intergenic	Intergenic	-1607	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
41729	chr11	66663601	66664830	+	0	NA	TTS (NM_001286135)	TTS (NM_001286135)	13672	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
45721	chr11	119094901	119096330	+	0	NA	promoter-TSS (NM_002105)	promoter-TSS (NM_002105)	-150	NM_002105	3014		NM_002105	ENSG00000188486	H2AX	H2A.X|H2A/X|H2AFX	H2A.X variant histone	protein-coding
181246	chr5	39204071	39204900	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	15078	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
222387	chr8	133897421	133898030	+	0	NA	intron (NR_125424, intron 2 of 3)	intron (NR_125424, intron 2 of 3)	11229	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
136892	chr2	189438001	189438230	+	0	NA	Intergenic	L1ME1|LINE|L1	-3318	NM_001303096	84128		NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
191889	chr6	15339571	15339930	+	0	NA	intron (NM_001267040, intron 1 of 17)	AluSp|SINE|Alu	90895	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
170000	chr3	180036721	180037130	+	0	NA	promoter-TSS (NM_001349399)	promoter-TSS (NM_001349399)	12	NM_001256752	51555		NM_016559	ENSG00000114757	PEX5L	PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b	peroxisomal biogenesis factor 5 like	protein-coding
133959	chr2	130590921	130591180	+	0	NA	Intergenic	Intergenic	8525	NM_001270421	55997		NM_032545	ENSG00000136698	CFC1	CFC1B|CRYPTIC|DTGA2|HTX2	cryptic, EGF-CFC family member 1	protein-coding
197239	chr6	69793371	69794480	+	0	NA	intron (NM_018368, intron 1 of 15)	AluJb|SINE|Alu	2541	NM_001363722	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
203957	chr7	1557601	1558180	+	0	NA	Intergenic	Intergenic	-1685	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
3293	chr1	15337921	15338180	+	0	NA	intron (NR_148918, intron 1 of 1)	intron (NR_148918, intron 1 of 1)	5833	NR_148918	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
182482	chr5	62401401	62402000	+	0	NA	intron (NM_001348077, intron 3 of 11)	AluSc|SINE|Alu	2205	NM_014473	27292		NM_014473	ENSG00000086189	DIMT1	DIM1|DIMT1L|HSA9761|HUSSY5	DIM1 rRNA methyltransferase and ribosome maturation factor	protein-coding
165693	chr3	101942471	101942630	+	0	NA	intron (NR_026934, intron 1 of 3)	intron (NR_026934, intron 1 of 3)	1691	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
119825	chr19	41357251	41357750	+	0	NA	intron (NM_030578, intron 3 of 3)	intron (NM_030578, intron 3 of 3)	-3578	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
45883	chr11	119848951	119849050	+	0	NA	Intergenic	AluYa5|SINE|Alu	119417	NR_120587	102724301		NR_120587	ENSG00000254854	NECTIN1-DT	-	NECTIN1 divergent transcript	ncRNA
177714	chr4	122151911	122153880	+	0	NA	intron (NM_001384125, intron 1 of 87)	intron (NM_001384125, intron 1 of 87)	564	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
170281	chr3	184314121	184318330	+	0	NA	intron (NM_182917, intron 3 of 31)	intron (NM_182917, intron 3 of 31)	1061	NM_182917	1981		NM_004953	ENSG00000114867	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma 1	protein-coding
203607	chr7	943071	943230	+	0	NA	intron (NM_001284308, intron 1 of 10)	intron (NM_001284308, intron 1 of 10)	2666	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
105377	chr17	82701971	82702730	+	0	NA	Intergenic	Intergenic	-3652	NM_006822	10966		NM_006822	ENSG00000141542	RAB40B	RAR|SEC4L	RAB40B, member RAS oncogene family	protein-coding
235379	chrX	44957651	44958150	+	0	NA	intron (NM_001291416, intron 2 of 28)	MER3|DNA|hAT-Charlie	84712	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
176469	chr4	89337721	89338130	+	0	NA	Intergenic	L3|LINE|CR1	-30125	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
167383	chr3	128803651	128805280	+	0	NA	intron (NM_004637, intron 3 of 5)	intron (NM_004637, intron 3 of 5)	-42343	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
133609	chr2	126413051	126413350	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-242735	NM_016815	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
16012	chr1	152038171	152038980	+	0	NA	Intergenic	Intergenic	-1571	NM_005620	6282		NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
99589	chr17	50509671	50510230	+	0	NA	intron (NR_158785, intron 1 of 17)	L2c|LINE|L2	1511	NM_001366294	84073		NM_032133	ENSG00000136449	MYCBPAP	AMAP-1|AMAP1	MYCBP associated protein	protein-coding
62215	chr13	98480951	98481550	+	0	NA	intron (NM_001286649, intron 2 of 9)	intron (NM_001286649, intron 2 of 9)	40875	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
82623	chr16	18928421	18928700	+	0	NA	Intergenic	AluSz|SINE|Alu	-2152	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
65573	chr14	51981571	51981730	+	0	NA	Intergenic	Intergenic	-7896	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
229436	chr9	121369601	121370700	+	0	NA	promoter-TSS (NM_004099)	promoter-TSS (NM_004099)	100	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
40357	chr11	63974201	63975280	+	0	NA	exon (NM_004074, exon 1 of 2)	exon (NM_004074, exon 1 of 2)	120	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
225642	chr9	36381301	36381500	+	0	NA	intron (NM_194332, intron 1 of 10)	MER49|LTR|ERV1	18869	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
97808	chr17	44791101	44791300	+	0	NA	Intergenic	AluY|SINE|Alu	32212	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
100440	chr17	61221171	61221950	+	0	NA	intron (NM_001353144, intron 24 of 25)	intron (NM_001353144, intron 24 of 25)	146144	NR_136397	101927855		NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
20169	chr1	192814751	192815280	+	0	NA	Intergenic	Intergenic	5976	NM_002923	5997		NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G protein signaling 2	protein-coding
150244	chr21	41411371	41411800	+	0	NA	Intergenic	L1PB1|LINE|L1	-8973	NM_001144925	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
70591	chr14	102760871	102761230	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-16399	NM_003300	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
131900	chr2	98763621	98764280	+	0	NA	intron (NR_126337, intron 3 of 3)	L1MA8|LINE|L1	7948	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
119547	chr19	40598201	40599000	+	0	NA	intron (NM_001042544, intron 1 of 32)	MIR3|SINE|MIR	1365	NM_001042544	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
52409	chr12	55751251	55751550	+	0	NA	3' UTR (NM_005811, exon 3 of 3)	3' UTR (NM_005811, exon 3 of 3)	8278	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
24710	chr1	247343971	247344130	+	0	NA	intron (NR_168399, intron 1 of 2)	intron (NR_168399, intron 1 of 2)	11996	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
124513	chr2	33421	34080	+	0	NA	Intergenic	Intergenic	12755	NM_001077710	642273		NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
68553	chr14	89360551	89361300	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	56308	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
215021	chr7	152404601	152404800	+	0	NA	intron (NM_170606, intron 1 of 58)	intron (NM_170606, intron 1 of 58)	31303	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
105520	chr17	83114171	83114330	+	0	NA	Intergenic	AluY|SINE|Alu	33104	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
73635	chr15	44668771	44669730	+	0	NA	intron (NM_001330283, intron 10 of 14)	intron (NM_001330283, intron 10 of 14)	-5588	NM_025137	80208		NM_025137	ENSG00000104133	SPG11	ALS5|CMT2X|KIAA1840	SPG11 vesicle trafficking associated, spatacsin	protein-coding
183299	chr5	76582051	76582350	+	0	NA	intron (NM_006633, intron 5 of 35)	intron (NM_006633, intron 5 of 35)	26769	NR_134278	101929109		NR_134278	ENSG00000249713	LOC101929109	-	uncharacterized LOC101929109	ncRNA
221061	chr8	116867701	116868300	+	0	NA	intron (NM_006265, intron 1 of 13)	intron (NM_006265, intron 1 of 13)	-6424	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
97101	chr17	42459721	42460280	+	0	NA	intron (NM_001378549, intron 1 of 20)	intron (NM_001378549, intron 1 of 20)	1122	NM_001378557	535		NM_005177	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|DEE104|NEDEBA|Stv1|VPP1|Vph1|a1	ATPase H+ transporting V0 subunit a1	protein-coding
22032	chr1	210342071	210342430	+	0	NA	intron (NM_001170580, intron 1 of 11).2	intron (NM_001170580, intron 1 of 11).2	12884	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
192110	chr6	16717451	16717950	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	42484	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
122217	chr19	48970751	48971730	+	0	NA	intron (NM_002103, intron 12 of 15)	intron (NM_002103, intron 12 of 15)	5931	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
131650	chr2	97645251	97647100	+	0	NA	exon (NM_001862, exon 1 of 4)	exon (NM_001862, exon 1 of 4)	113	NM_001862	1329		NM_001862	ENSG00000135940	COX5B	COXVB	cytochrome c oxidase subunit 5B	protein-coding
235073	chrX	40171001	40171230	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	6162	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
167089	chr3	127544101	127545030	+	0	NA	Intergenic	Intergenic	-6785	NR_125397	101927149		NR_125397	ENSG00000239921	LINC01471	-	long intergenic non-protein coding RNA 1471	ncRNA
19154	chr1	171582571	171582730	+	0	NA	intron (NM_015172, intron 28 of 33)	Tigger3b|DNA|TcMar-Tigger	-37113	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
231156	chr9	129877701	129877900	+	0	NA	intron (NM_001110303, intron 22 of 25)	AluSx|SINE|Alu	8195	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
234475	chrX	17860501	17860700	+	0	NA	non-coding (NR_033349, exon 1 of 2)	non-coding (NR_033349, exon 1 of 2)	227	NR_033348	10742		NM_021785	ENSG00000131831	RAI2	-	retinoic acid induced 2	protein-coding
227183	chr9	87792871	87793450	+	0	NA	Intergenic	Intergenic	20245	NR_027917	392360		NM_001023564	ENSG00000290757	CTSL3P	CTSL3|HCTSL-s	cathepsin L family member 3, pseudogene	pseudo
96430	chr17	40185271	40185630	+	0	NA	intron (NM_001303534, intron 4 of 14)	AluSz|SINE|Alu	7980	NM_016339	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
47074	chr12	569471	571130	+	0	NA	intron (NM_016533, intron 1 of 3)	L3b|LINE|CR1	16186	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
149440	chr21	31460971	31461330	+	0	NA	intron (NM_001353690, intron 1 of 27)	intron (NM_001353690, intron 1 of 27)	97937	NM_001353689	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
85388	chr16	50289051	50289350	+	0	NA	intron (NM_001114, intron 2 of 25)	intron (NM_001114, intron 2 of 25)	-3416	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
224885	chr9	32361071	32361500	+	0	NA	Intergenic	Intergenic	-23318	NM_001278352	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
222014	chr8	130063821	130065350	+	0	NA	intron (NM_001362924, intron 28 of 30)	MER21A|LTR|ERVL	20183	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
31985	chr10	100825851	100826200	+	0	NA	intron (NM_003988, intron 9 of 10)	intron (NM_003988, intron 9 of 10)	80443	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
83824	chr16	28845721	28847730	+	0	NA	promoter-TSS (NM_001365360)	promoter-TSS (NM_001365360)	125	NM_001308293	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
161535	chr3	42635051	42635550	+	0	NA	exon (NM_001349125, exon 14 of 19)	exon (NM_001349125, exon 14 of 19)	-18397	NM_145166	92999		NM_145166	ENSG00000114853	ZBTB47	ZNF651	zinc finger and BTB domain containing 47	protein-coding
70262	chr14	101716401	101716800	+	0	NA	Intergenic	Intergenic	-13837	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
13879	chr1	118990251	118990350	+	0	NA	promoter-TSS (NM_152380)	promoter-TSS (NM_152380)	-790	NM_152380	6913		NM_152380	ENSG00000092607	TBX15	TBX14	T-box transcription factor 15	protein-coding
4580	chr1	22068751	22069800	+	0	NA	intron (NM_044472, intron 1 of 5)	AluSz|SINE|Alu	16566	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
180670	chr5	18745701	18746700	+	0	NA	Intergenic	LTR12F|LTR|ERV1	938926	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
134251	chr2	135169201	135169600	+	0	NA	3' UTR (NM_012233, exon 24 of 24)	3' UTR (NM_012233, exon 24 of 24)	32772	NR_145723	109616967		NR_145723	ENSG00000208308	SNORA40B	-	small nucleolar RNA, H/ACA box 40B	snoRNA
208750	chr7	73525401	73526200	+	0	NA	Intergenic	AluJr|SINE|Alu	-3507	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
163429	chr3	50573401	50574780	+	0	NA	intron (NM_001377426, intron 4 of 10)	intron (NM_001377426, intron 4 of 10)	-3063	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
46484	chr11	128322721	128323700	+	0	NA	Intergenic	Intergenic	114444	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
234562	chrX	19739401	19740500	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	59823	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
85512	chr16	50772271	50772630	+	0	NA	intron (NM_015247, intron 7 of 19)	L1MD1|LINE|L1	30035	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
104778	chr17	81715951	81716530	+	0	NA	intron (NM_012140, intron 5 of 10)	intron (NM_012140, intron 5 of 10)	3956	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
162187	chr3	46999951	47000650	+	0	NA	exon (NM_015175, exon 27 of 54)	exon (NM_015175, exon 27 of 54)	-11242	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
159441	chr3	13657701	13658280	+	0	NA	intron (NR_027103, intron 1 of 5)	intron (NR_027103, intron 1 of 5)	7269	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
78945	chr15	101280271	101280950	+	0	NA	TTS (NR_135508)	TTS (NR_135508)	-3125	NM_203472	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
92036	chr17	7488361	7488900	+	0	NA	intron (NM_000937, intron 1 of 29)	AluY|SINE|Alu	4264	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
133731	chr2	127390601	127390800	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-2235	NM_001371911	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
43963	chr11	93737921	93738880	+	0	NA	non-coding (NR_146090, exon 3 of 14)	non-coding (NR_146090, exon 3 of 14)	3095	NM_024116	79101		NM_024116	ENSG00000166012	TAF1D	JOSD3|RAFI41|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I subunit D	protein-coding
220557	chr8	100715121	100715450	+	0	NA	intron (NM_002568, intron 4 of 14)	intron (NM_002568, intron 4 of 14)	6803	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
218113	chr8	41495121	41495380	+	0	NA	intron (NR_156425, intron 2 of 5)	intron (NR_156425, intron 2 of 5)	4638	NR_156425	51125		NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
185709	chr5	132017401	132018300	+	0	NA	Intergenic	Intergenic	-5782	NM_001205250	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
99247	chr17	49706321	49706580	+	0	NA	intron (NM_005827, intron 2 of 8)	intron (NM_005827, intron 2 of 8)	1514	NM_001278784	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
198602	chr6	107718701	107718900	+	0	NA	intron (NM_001286409, intron 2 of 3)	intron (NM_001286409, intron 2 of 3)	13350	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
1753	chr1	6007371	6007680	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	14849	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
191253	chr6	5995601	5995800	+	0	NA	Intergenic	Intergenic	8344	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
107689	chr18	49456901	49457130	+	0	NA	intron (NM_001374428, intron 1 of 18)	intron (NM_001374428, intron 1 of 18)	3630	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
237687	chrX	124362071	124362430	+	0	NA	intron (NM_002351, intron 1 of 3)	MLT1B-int|LTR|ERVL-MaLR	15687	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
74086	chr15	52699501	52699700	+	0	NA	intron (NR_169533, intron 1 of 3)	L2|LINE|L2	10215	NM_001385013	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
110669	chr19	2257721	2258600	+	0	NA	Intergenic	Intergenic	-1743	NM_144616	126306		NM_144616	ENSG00000167476	JSRP1	JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding
223863	chr9	115301	115500	+	0	NA	TTS (NM_207305)	TTS (NM_207305)	3017	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
109487	chr19	817951	818500	+	0	NA	intron (NM_001270366, intron 2 of 7)	AluSx|SINE|Alu	3727	NM_024888	79948		NM_024888	ENSG00000129951	PLPPR3	LPPR3|LPR3|PRG-2|PRG2	phospholipid phosphatase related 3	protein-coding
239489	chrY	56748621	56749080	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-205405	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
144642	chr20	35974851	35975240	+	0	NA	TTS (NM_001304367)	TTS (NM_001304367)	6455	NM_001365709	140894		NM_080834	ENSG00000149646	CNBD2	C20orf152|CNMPD1	cyclic nucleotide binding domain containing 2	protein-coding
105399	chr17	82751231	82753030	+	0	NA	promoter-TSS (NM_005993)	promoter-TSS (NM_005993)	65	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
95143	chr17	35063221	35064180	+	0	NA	promoter-TSS (NM_001017368)	promoter-TSS (NM_001017368)	7	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
194012	chr6	31804801	31805300	+	0	NA	intron (NM_021177, intron 2 of 4).3	AluY|SINE|Alu	1916	NM_021177	57819		NM_021177	ENSG00000204392	LSM2	C6orf28|G7B|YBL026W|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
214235	chr7	148868201	148868400	+	0	NA	intron (NM_001203248, intron 1 of 19)	MSTA|LTR|ERVL-MaLR	15185	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
198952	chr6	110826321	110826580	+	0	NA	intron (NM_001287215, intron 1 of 8)	MLT1C|LTR|ERVL-MaLR	-10595	NM_001300964	23097		NM_015076	ENSG00000155111	CDK19	CDC2L6|CDK11|DEE87|EIEE87|bA346C16.3	cyclin dependent kinase 19	protein-coding
235397	chrX	45135871	45136030	+	0	NA	Intergenic	Intergenic	64926	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
211183	chr7	102595471	102595830	+	0	NA	exon (NM_006989, exon 10 of 21)	exon (NM_006989, exon 10 of 21)	21106	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
26109	chr10	13348901	13350680	+	0	NA	Intergenic	L2|LINE|L2	-1492	NM_001195602	22929		NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
74273	chr15	57323921	57324580	+	0	NA	intron (NR_120337, intron 4 of 4)	intron (NR_120337, intron 4 of 4)	5112	NR_120337	101928611		NR_120337	ENSG00000260172	LINC01413	-	long intergenic non-protein coding RNA 1413	ncRNA
34315	chr10	132149151	132149850	+	0	NA	exon (NM_001323086, exon 15 of 24)	exon (NM_001323086, exon 15 of 24)	-37448	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
42097	chr11	67515001	67515200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6938	NM_001271849	10263		NM_005851	ENSG00000167797	CDK2AP2	DOC-1R|DOC1R|p14	cyclin dependent kinase 2 associated protein 2	protein-coding
64077	chr14	22570021	22570980	+	0	NA	intron (NM_001344, intron 2 of 2)	intron (NM_001344, intron 2 of 2)	-13438	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
213755	chr7	140478261	140480200	+	0	NA	exon (NM_013446, exon 1 of 8)	exon (NM_013446, exon 1 of 8)	275	NM_013446	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
38071	chr11	35189571	35189800	+	0	NA	intron (NM_001202557, intron 4 of 8)	intron (NM_001202557, intron 4 of 8)	26735	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
107560	chr18	48812351	48812650	+	0	NA	intron (NM_014772, intron 9 of 11)	L1ME4a|LINE|L1	130307	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
51530	chr12	52304051	52304430	+	0	NA	intron (NM_001320198, intron 5 of 10)	intron (NM_001320198, intron 5 of 10)	-12706	NM_002281	3887		NM_002281	ENSG00000205426	KRT81	HB1|Hb-1|K81|KRTHB1|MLN137|ghHkb1|hHAKB2-1	keratin 81	protein-coding
217061	chr8	23424271	23424430	+	0	NA	Intergenic	L2a|LINE|L2	-20230	NM_002318	4017		NM_002318	ENSG00000134013	LOXL2	LOR|LOR2|WS9-14	lysyl oxidase like 2	protein-coding
152486	chr22	20860901	20861550	+	0	NA	intron (NM_004782, intron 1 of 4)	AluSc|SINE|Alu	2218	NM_004782	9342		NM_004782	ENSG00000099940	SNAP29	CEDNIK|SNAP-29	synaptosome associated protein 29	protein-coding
200081	chr6	130150201	130150980	+	0	NA	intron (NM_001258275, intron 11 of 13)	intron (NM_001258275, intron 11 of 13)	65295	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
110580	chr19	2155821	2156730	+	0	NA	Intergenic	Intergenic	-4709	NM_001261826	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
90831	chr17	2302171	2302330	+	0	NA	intron (NM_017575, intron 1 of 18)	AluJr|SINE|Alu	1535	NM_017575	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
87822	chr16	75620001	75621580	+	0	NA	exon (NM_001324448, exon 3 of 9)	exon (NM_001324448, exon 3 of 9)	2491	NM_001324452	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
193381	chr6	30347951	30348430	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	3034	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
192228	chr6	18277151	18277680	+	0	NA	Intergenic	CpG	-12885	NM_001134709	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
94510	chr17	29393351	29394130	+	0	NA	intron (NM_025142, intron 1 of 17)	intron (NM_025142, intron 1 of 17)	2815	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
87993	chr16	80720401	80720600	+	0	NA	intron (NM_152342, intron 1 of 6)	intron (NM_152342, intron 1 of 6)	84098	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
151242	chr21	45287301	45288880	+	0	NA	promoter-TSS (NM_015227)	promoter-TSS (NM_015227)	38	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
229879	chr9	126498351	126498450	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-87896	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
43072	chr11	74594151	74594250	+	0	NA	intron (NR_046409, intron 2 of 10)	intron (NR_046409, intron 2 of 10)	1618	NR_046410	10714		NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
28383	chr10	47340051	47340150	+	0	NA	Intergenic	Intergenic	-8263	NM_002900	5949		NM_002900	ENSG00000265203	RBP3	D10S64|D10S65|D10S66|IRBP|RBPI|RP66	retinol binding protein 3	protein-coding
236464	chrX	71580071	71580550	+	0	NA	intron (NM_052957, intron 1 of 12)	intron (NM_052957, intron 1 of 12)	2286	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
175374	chr4	70666901	70667500	+	0	NA	promoter-TSS (NM_144646)	promoter-TSS (NM_144646)	-692	NM_144646	3512		NM_144646	ENSG00000132465	JCHAIN	IGCJ|IGJ|JCH	joining chain of multimeric IgA and IgM	protein-coding
70986	chr14	104712971	104713330	+	0	NA	intron (NM_022489, intron 18 of 22)	intron (NM_022489, intron 18 of 22)	-11079	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
200200	chr6	131197771	131198350	+	0	NA	intron (NR_164834, intron 5 of 9)	LTR14B|LTR|ERVK	-52344	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
11237	chr1	88893751	88894080	+	0	NA	Intergenic	Intergenic	-2348	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
59724	chr13	29835501	29835980	+	0	NA	intron (NM_007106, intron 1 of 4)	AluSc|SINE|Alu	14877	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
237719	chrX	125203901	125204430	+	0	NA	Intergenic	CpG	-115706	NM_001195272	100129520		NM_001195272	ENSG00000282815	TEX13C	-	TEX13 family member C	protein-coding
206872	chr7	37640351	37640850	+	0	NA	Intergenic	L1PA11|LINE|L1	-43166	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
159337	chr3	13071371	13072430	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	1529	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
140487	chr2	233189221	233189700	+	0	NA	intron (NM_001017915, intron 21 of 26).2	intron (NM_001017915, intron 21 of 26).2	-62111	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
3358	chr1	15586071	15586730	+	0	NA	Intergenic	AluY|SINE|Alu	-1349	NM_024758	79814		NM_024758	ENSG00000116771	AGMAT	-	agmatinase (putative)	protein-coding
107717	chr18	49788621	49789450	+	0	NA	intron (NM_006111, intron 7 of 9)	intron (NM_006111, intron 7 of 9)	24498	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
234766	chrX	23782851	23783980	+	0	NA	non-coding (NR_027783, exon 1 of 7)	non-coding (NR_027783, exon 1 of 7)	257	NM_002970	6303		NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
90138	chr17	117151	117900	+	0	NA	Intergenic	Intergenic	-20044	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
133812	chr2	127812751	127813250	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-1813	NM_001006622	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
85716	chr16	56628001	56628350	+	0	NA	Intergenic	AluY|SINE|Alu	2394	NM_175617	4493		NM_175617	ENSG00000169715	MT1E	MT-1E|MT-IE|MT1|MTD	metallothionein 1E	protein-coding
60977	chr13	46656971	46657630	+	0	NA	intron (NM_015116, intron 2 of 18)	intron (NM_015116, intron 2 of 18)	104130	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
158943	chr3	10151901	10152100	+	0	NA	3' UTR (NM_000551, exon 3 of 3)	3' UTR (NM_000551, exon 3 of 3)	10222	NM_198156	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
102336	chr17	75437101	75437300	+	0	NA	Intergenic	AluJb|SINE|Alu	-19435	NM_014738	9772		NM_014738	ENSG00000177728	TMEM94	IDDCDF|KIAA0195	transmembrane protein 94	protein-coding
76202	chr15	73683271	73683630	+	0	NA	promoter-TSS (NM_001329629)	promoter-TSS (NM_001329629)	-831	NM_025240	80381		NM_025240	ENSG00000103855	CD276	4Ig-B7-H3|B7-H3|B7H3|B7RP-2	CD276 molecule	protein-coding
131365	chr2	96200871	96201030	+	0	NA	intron (NM_001385622, intron 1 of 7)	intron (NM_001385622, intron 1 of 7)	-7466	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
145885	chr20	45949851	45949950	+	0	NA	intron (NM_022095, intron 23 of 27)	intron (NM_022095, intron 23 of 27)	15217	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
91850	chr17	7213901	7216780	+	0	NA	intron (NR_135527, intron 3 of 20)	intron (NR_135527, intron 3 of 20)	-1785	NM_001270447	37		NM_000018	ENSG00000072778	ACADVL	ACAD6|LCACD|VLCAD	acyl-CoA dehydrogenase very long chain	protein-coding
121915	chr19	48417301	48417730	+	0	NA	intron (NM_000836, intron 8 of 13)	intron (NM_000836, intron 8 of 13)	23847	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
73910	chr15	50763471	50763880	+	0	NA	intron (NM_032802, intron 1 of 14)	AluSg|SINE|Alu	2031	NM_032802	84888		NM_032802	ENSG00000138600	SPPL2A	IMD86|IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
218736	chr8	58800801	58802200	+	0	NA	Intergenic	Intergenic	-141647	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
42129	chr11	67628351	67628450	+	0	NA	exon (NM_001243750, exon 3 of 4)	exon (NM_001243750, exon 3 of 4)	1537	NM_181843	254552		NM_181843	ENSG00000167799	NUDT8	-	nudix hydrolase 8	protein-coding
124132	chr19	55681871	55682030	+	0	NA	intron (NM_001321263, intron 2 of 10)	AluJo|SINE|Alu	5325	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
20877	chr1	202136451	202136550	+	0	NA	intron (NM_001256129, intron 3 of 5)	AluSc8|SINE|Alu	8237	NM_138795	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
81688	chr16	11223871	11224700	+	0	NA	Intergenic	Intergenic	31897	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
18065	chr1	160640371	160640830	+	0	NA	intron (NR_104400, intron 1 of 4)	intron (NR_104400, intron 1 of 4)	6444	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
185631	chr5	131521451	131521750	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	113629	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
234798	chrX	24017221	24018130	+	0	NA	intron (NM_030624, intron 2 of 3)	AluJb|SINE|Alu	9511	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
163204	chr3	50233951	50234380	+	0	NA	intron (NM_001282617, intron 1 of 8)	AluY|SINE|Alu	-2039	NM_002070	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
5486	chr1	25678301	25678500	+	0	NA	intron (NM_020379, intron 1 of 11)	MIRc|SINE|MIR	-17755	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
128985	chr2	64726451	64726550	+	0	NA	Intergenic	Intergenic	-72587	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
5361	chr1	25357201	25358080	+	0	NA	intron (NM_014313, intron 6 of 6)	(GT)n|Simple_repeat|Simple_repeat	19306	NM_014313	23585		NM_014313	ENSG00000183726	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
60624	chr13	42319521	42320180	+	0	NA	3' UTR (NM_016248, exon 13 of 13)	3' UTR (NM_016248, exon 13 of 13)	47698	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
112801	chr19	7491901	7492630	+	0	NA	Intergenic	L1MB5|LINE|L1	-2865	NM_001300881	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
122854	chr19	50479951	50480050	+	0	NA	intron (NM_206538, intron 3 of 6)	intron (NM_206538, intron 3 of 6)	-3152	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
180808	chr5	32329301	32329730	+	0	NA	Intergenic	Intergenic	-16576	NM_001040446	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
18090	chr1	160686221	160686680	+	0	NA	intron (NM_001256030, intron 1 of 2)	intron (NM_001256030, intron 1 of 2)	25372	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
29789	chr10	72279171	72279330	+	0	NA	Intergenic	AluSx1|SINE|Alu	5326	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
49606	chr12	27525501	27525780	+	0	NA	intron (NM_177444, intron 1 of 28)	intron (NM_177444, intron 1 of 28)	1434	NM_177444	8496		NM_003622	ENSG00000110841	PPFIBP1	L2|NEDSMBA|SGT2|hSGT2|hSgt2p	PPFIA binding protein 1	protein-coding
143125	chr20	23455321	23455920	+	0	NA	Intergenic	Intergenic	-2744	NM_130794	140880		NM_080830	ENSG00000125831	CST11	CST8L|CTES2|SC13|dJ322G13.6	cystatin 11	protein-coding
13167	chr1	111769451	111769800	+	0	NA	Intergenic	Intergenic	13724	NM_007204	11218		NM_007204	ENSG00000064703	DDX20	DP103|GEMIN3	DEAD-box helicase 20	protein-coding
164933	chr3	71210301	71210700	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	34577	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
147976	chr20	62987601	62987800	+	0	NA	Intergenic	Intergenic	19264	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
197148	chr6	59541951	59542250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1580654	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
238265	chrX	148381101	148382000	+	0	NA	Intergenic	Intergenic	-119067	NM_001169124	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
172963	chr4	3836551	3837150	+	0	NA	Intergenic	Intergenic	70465	NM_000683	152		NM_000683	ENSG00000184160	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
2830	chr1	11056671	11057030	+	0	NA	intron (NM_003132, intron 3 of 7)	intron (NM_003132, intron 3 of 7)	3168	NM_003132	6723		NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
35051	chr11	593671	594230	+	0	NA	intron (NM_001286582, intron 6 of 17)	intron (NM_001286582, intron 6 of 17)	17480	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
31059	chr10	88987301	88987980	+	0	NA	intron (NM_001320855, intron 1 of 8)	intron (NM_001320855, intron 1 of 8)	-3158	NR_028035	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
112665	chr19	6945821	6946080	+	0	NA	Intergenic	L1M2|LINE|L1	44896	NR_024075	326342		NM_001080498		ADGRE4P	EMR4|EMR4P|FIRE|GPR127|PGR16	adhesion G protein-coupled receptor E4, pseudogene	pseudo
196758	chr6	45435201	45435400	+	0	NA	intron (NM_001278478, intron 2 of 5)	intron (NM_001278478, intron 2 of 5)	13025	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
33503	chr10	119138121	119138380	+	0	NA	TTS (NM_001303111)	TTS (NM_001303111)	27442	NR_110305	119559		NM_178867	ENSG00000183605	SFXN4	BCRM1|COXPD18|SLC56A4	sideroflexin 4	protein-coding
36887	chr11	10745371	10745530	+	0	NA	Intergenic	L1MEd|LINE|L1	-5796	NM_001346279	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
183277	chr5	76483521	76483780	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-63759	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
46819	chr11	130434501	130435300	+	0	NA	Intergenic	Intergenic	-6291	NM_007037	11095		NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif 8	protein-coding
59212	chr13	23372701	23373200	+	0	NA	intron (NM_014363, intron 3 of 9)	intron (NM_014363, intron 3 of 9)	2558	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
155509	chr22	38684571	38685400	+	0	NA	TTS (NM_001360236)	TTS (NM_001360236)	3028	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
186219	chr5	134384251	134384550	+	0	NA	intron (NM_003337, intron 4 of 5)	intron (NM_003337, intron 4 of 5)	12831	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
104495	chr17	81164071	81164630	+	0	NA	intron (NM_001080395, intron 1 of 13)	intron (NM_001080395, intron 1 of 13)	-1157	NM_001354639	388428		NM_207389	ENSG00000225180	PVALEF	AATK-AS1	parvalbumin like EF-hand containing	protein-coding
142788	chr20	13246201	13246400	+	0	NA	intron (NM_080826, intron 1 of 5)	intron (NM_080826, intron 1 of 5)	-6613	NR_040043	100505536		NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	ncRNA
105093	chr17	82122321	82122780	+	0	NA	intron (NM_001367828, intron 16 of 16)	LTR40a|LTR|ERVL	-24314	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
50551	chr12	48001471	48002450	+	0	NA	intron (NM_001844, intron 1 of 53)	CpG	2516	NM_001844	1280		NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
14242	chr1	143236971	143237500	+	0	NA	Intergenic	Intergenic	185357	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
139095	chr2	218886021	218887000	+	0	NA	intron (NM_025216, intron 2 of 3)	intron (NM_025216, intron 2 of 3)	5658	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
212231	chr7	121081321	121081680	+	0	NA	intron (NM_001105533, intron 4 of 17)	intron (NM_001105533, intron 4 of 17)	92109	NM_001105533	79974		NM_024913	ENSG00000106034	CPED1	C7orf58	cadherin like and PC-esterase domain containing 1	protein-coding
69220	chr14	92728721	92729230	+	0	NA	intron (NM_001008530, intron 3 of 14)	intron (NM_001008530, intron 3 of 14)	19652	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
103156	chr17	77422371	77422530	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	17373	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
187486	chr5	142162601	142162800	+	0	NA	Intergenic	Intergenic	53921	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
204383	chr7	3009821	3010600	+	0	NA	intron (NM_001324281, intron 1 of 25)	HAL1ME|LINE|L1	33657	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
203650	chr7	983851	984700	+	0	NA	intron (NM_017781, intron 1 of 8)	intron (NM_017781, intron 1 of 8)	1094	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
93629	chr17	19166451	19166750	+	0	NA	Intergenic	L2c|LINE|L2	-3976	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
138631	chr2	210174051	210174450	+	0	NA	Intergenic	Intergenic	-2841	NM_152519	151050		NM_152519	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1 like	protein-coding
146131	chr20	48632351	48632680	+	0	NA	exon (NM_020820, exon 34 of 40)	exon (NM_020820, exon 34 of 40)	195484	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
181297	chr5	40033221	40033650	+	0	NA	Intergenic	Intergenic	-18856	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
179275	chr4	176321851	176322350	+	0	NA	intron (NM_021928, intron 1 of 4)	intron (NM_021928, intron 1 of 4)	2134	NM_021928	60559		NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22|SPC22/23|SPC23|SPC3|YLR066W	signal peptidase complex subunit 3	protein-coding
218360	chr8	43073551	43074100	+	0	NA	intron (NR_033698, intron 4 of 7)	MER20|DNA|hAT-Charlie	17502	NM_002027	2339		NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, subunit alpha	protein-coding
200814	chr6	137924101	137924500	+	0	NA	Intergenic	Intergenic	21500	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
96932	chr17	42162401	42162600	+	0	NA	intron (NM_012285, intron 14 of 16)	L2c|LINE|L2	-7511	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
97607	chr17	44123041	44124480	+	0	NA	promoter-TSS (NM_001015053)	promoter-TSS (NM_001015053)	-119	NM_001382393	10014		NM_005474	ENSG00000108840	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
45844	chr11	119383121	119383630	+	0	NA	intron (NR_034160, intron 1 of 3)	L2b|LINE|L2	1597	NR_034160	100499227		NR_034160		USP2-AS1	THY1-AS1|gLINC	USP2 antisense RNA 1	ncRNA
216929	chr8	22739171	22739530	+	0	NA	intron (NM_001363233, intron 4 of 6)	intron (NM_001363233, intron 4 of 6)	-45870	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
147588	chr20	61965871	61966230	+	0	NA	Intergenic	Intergenic	-12388	NR_031658	100302168		NR_031658	ENSG00000284193	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
134314	chr2	136025371	136025730	+	0	NA	Intergenic	Intergenic	-39866	NM_001293312	1615		NM_001349	ENSG00000115866	DARS1	DARS|HBSL|aspRS	aspartyl-tRNA synthetase 1	protein-coding
236008	chrX	54807021	54807900	+	0	NA	promoter-TSS (NM_177433)	promoter-TSS (NM_177433)	-285	NM_177433	10916		NM_014599	ENSG00000102316	MAGED2	11B6|BARTS5|BCG-1|BCG1|HCA10|MAGE-D2	MAGE family member D2	protein-coding
156130	chr22	40112121	40112580	+	0	NA	intron (NM_001024843, intron 1 of 23)	L1MEi|LINE|L1	-65575	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
203900	chr7	1495251	1495930	+	0	NA	intron (NM_001080453, intron 12 of 47)	intron (NM_001080453, intron 12 of 47)	8799	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
130883	chr2	87417871	87418030	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-37477	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
229846	chr9	126222751	126223050	+	0	NA	Intergenic	CpG	53015	NR_121584	101929116		NR_121584	ENSG00000288537	LOC101929116	-	uncharacterized LOC101929116	ncRNA
13369	chr1	113902651	113902900	+	0	NA	exon (NM_001253852, exon 2 of 10)	exon (NM_001253852, exon 2 of 10)	-1844	NM_001319947	64858		NM_022836	ENSG00000118655	DCLRE1B	APOLLO|DKCB8|SNM1B|SNMIB	DNA cross-link repair 1B	protein-coding
86985	chr16	68215071	68215230	+	0	NA	intron (NM_004555, intron 10 of 10)	intron (NM_004555, intron 10 of 10)	18349	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
54438	chr12	91774501	91774700	+	0	NA	Intergenic	Intergenic	367113	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
198420	chr6	106083621	106083900	+	0	NA	Intergenic	Intergenic	-2576	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
201731	chr6	149834351	149835080	+	0	NA	intron (NM_032832, intron 5 of 6)	intron (NM_032832, intron 5 of 6)	-28783	NR_045126	100652739		NR_045126	ENSG00000268592	RAET1E-AS1	RAET1G-AS1	RAET1E antisense RNA 1	ncRNA
78031	chr15	90001271	90002950	+	0	NA	intron (NM_198526, intron 1 of 4)	CpG	786	NM_198526	374655		NM_198526	ENSG00000140548	ZNF710	-	zinc finger protein 710	protein-coding
88216	chr16	81841471	81842260	+	0	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	62574	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
34233	chr10	130127671	130128200	+	0	NA	Intergenic	Intergenic	-8440	NM_001199868	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
65605	chr14	52243251	52243350	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-24398	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
195292	chr6	36529321	36529580	+	0	NA	intron (NM_007271, intron 2 of 13)	intron (NM_007271, intron 2 of 13)	18029	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
227458	chr9	90871071	90871250	+	0	NA	intron (NM_003177, intron 7 of 13)	intron (NM_003177, intron 7 of 13)	43740	NM_001174167	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
189716	chr5	176529571	176530640	+	0	NA	exon (NM_014901, exon 7 of 11)	exon (NM_014901, exon 7 of 11)	7297	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
91418	chr17	4713271	4713430	+	0	NA	intron (NR_047516, intron 1 of 13)	AluSx1|SINE|Alu	2718	NM_199004	409		NM_004313	ENSG00000141480	ARRB2	ARB2|ARR2|BARR2	arrestin beta 2	protein-coding
161427	chr3	41894051	41894330	+	0	NA	intron (NM_017886, intron 16 of 36)	intron (NM_017886, intron 16 of 36)	67913	NM_017886	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
37712	chr11	30346051	30346380	+	0	NA	Intergenic	L1PA15|LINE|L1	23111	NM_152316	120534		NM_152316	ENSG00000152219	ARL14EP	ARF7EP|C11orf46|dJ299F11.1	ADP ribosylation factor like GTPase 14 effector protein	protein-coding
26936	chr10	26485101	26485650	+	0	NA	intron (NM_019043, intron 2 of 14)	MIR3|SINE|MIR	47034	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
170057	chr3	182807021	182807300	+	0	NA	intron (NM_014616, intron 1 of 29)	MIRc|SINE|MIR	13656	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
183026	chr5	73170651	73170750	+	0	NA	Intergenic	LTR50|LTR|ERVL	-2493	NM_153217	134288		NM_153217	ENSG00000164325	TMEM174	-	transmembrane protein 174	protein-coding
120473	chr19	44740251	44740680	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-8243	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
193506	chr6	30575971	30576530	+	0	NA	intron (NM_001090, intron 1 of 23).3	L2a|LINE|L2	4808	NM_001025091	23		NM_001090	ENSG00000204574	ABCF1	ABC27|ABC50	ATP binding cassette subfamily F member 1	protein-coding
80653	chr16	3003501	3005030	+	0	NA	Intergenic	CpG	5310	NR_110949	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
35826	chr11	2267921	2268430	+	0	NA	TTS (NM_005170)	TTS (NM_005170)	2413	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
38803	chr11	47284271	47284630	+	0	NA	exon (NM_001376597, exon 12 of 36)	exon (NM_001376597, exon 12 of 36)	-12340	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
119568	chr19	40648651	40648750	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	41464	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
116022	chr19	17160851	17161450	+	0	NA	intron (NM_004145, intron 8 of 39)	intron (NM_004145, intron 8 of 39)	-54207	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
42327	chr11	68485771	68485930	+	0	NA	intron (NM_001352362, intron 2 of 24)	AluJb|SINE|Alu	25098	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
230515	chr9	128295051	128295780	+	0	NA	Intergenic	Intergenic	19139	NM_001040011	375757		NM_001040011	ENSG00000175854	SWI5	C9orf119|SAE3	SWI5 homologous recombination repair protein	protein-coding
112307	chr19	5886001	5886600	+	0	NA	Intergenic	Intergenic	-15760	NM_002034	2527		NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding
104982	chr17	81994721	81994980	+	0	NA	exon (NM_001330528, exon 4 of 15)	exon (NM_001330528, exon 4 of 15)	17221	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
114805	chr19	13794581	13795930	+	0	NA	promoter-TSS (NM_001367834)	promoter-TSS (NM_001367834)	-188	NM_001367834	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
116944	chr19	18850121	18850680	+	0	NA	intron (NM_001297549, intron 4 of 23)	intron (NM_001297549, intron 4 of 23)	18441	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
149830	chr21	35026511	35028630	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	11856	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
138709	chr2	213129651	213130150	+	0	NA	intron (NM_001371277, intron 3 of 6)	L2a|LINE|L2	20537	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
12916	chr1	110636001	110636700	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-4910	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
208707	chr7	73298301	73298500	+	0	NA	Intergenic	Intergenic	10426	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
104213	chr17	80544471	80545300	+	0	NA	promoter-TSS (NM_001163034)	promoter-TSS (NM_001163034)	47	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
160753	chr3	32567551	32567850	+	0	NA	intron (NM_016141, intron 2 of 12)	AluJb|SINE|Alu	3158	NM_016141	51143		NM_016141	ENSG00000144635	DYNC1LI1	DLC-A|DLIC-1|DNCLI1|LIC1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding
193887	chr6	31589751	31590050	+	0	NA	TTS (NM_001166538)	TTS (NM_001166538)	2700	NM_205840	7940		NM_007161	ENSG00000204482	LST1	B144|D6S49E|LST-1	leukocyte specific transcript 1	protein-coding
83978	chr16	29289551	29290000	+	0	NA	Intergenic	Intergenic	-12512	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
47246	chr12	1126051	1126700	+	0	NA	intron (NM_178039, intron 6 of 17)	L1MEd|LINE|L1	98627	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
119596	chr19	40744121	40745080	+	0	NA	exon (NM_001353807, exon 4 of 7)	exon (NM_001353807, exon 4 of 7)	5877	NR_148549	284325		NM_198476	ENSG00000188493	ACTMAP	C19orf54	actin maturation protease	protein-coding
111260	chr19	3534851	3534950	+	0	NA	3' UTR (NM_001136197, exon 11 of 11)	3' UTR (NM_001136197, exon 11 of 11)	-4257	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
159516	chr3	14410121	14410950	+	0	NA	intron (NR_103507, intron 1 of 13)	intron (NR_103507, intron 1 of 13)	7929	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
126641	chr2	28869871	28871450	+	0	NA	promoter-TSS (NM_017910)	promoter-TSS (NM_017910)	-351	NM_017910	55006		NM_017910	ENSG00000171103	TRMT61B	-	tRNA methyltransferase 61B	protein-coding
125220	chr2	10326251	10327100	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	-3488	NM_001258357	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
180977	chr5	35785671	35786380	+	0	NA	intron (NM_024867, intron 30 of 36)	intron (NM_024867, intron 30 of 36)	-70866	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
101052	chr17	64815221	64815480	+	0	NA	intron (NR_024386, intron 4 of 10)	intron (NR_024386, intron 4 of 10)	6752	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
46443	chr11	128058721	128059080	+	0	NA	Intergenic	Intergenic	-149866	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
195127	chr6	35671571	35672130	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	-7061	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
234284	chrX	13652571	13653980	+	0	NA	5' UTR (NM_152634, exon 1 of 4)	5' UTR (NM_152634, exon 1 of 4)	134	NM_001297563	170082		NM_152634	ENSG00000176896	TCEANC	TCEANC1	transcription elongation factor A N-terminal and central domain containing	protein-coding
159831	chr3	16480951	16481730	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	32359	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
66836	chr14	64891821	64892500	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-12253	NM_001355437	6710		NM_000347	ENSG00000070182	SPTB	EL3|HS2|HSPTB1|SPH2	spectrin beta, erythrocytic	protein-coding
174853	chr4	48654701	48654900	+	0	NA	intron (NM_015030, intron 3 of 63)	intron (NM_015030, intron 3 of 63)	125479	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
108135	chr18	62447671	62447830	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-75275	NM_017742	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
232519	chr9	136322901	136324000	+	0	NA	non-coding (NR_026964, exon 1 of 1)	non-coding (NR_026964, exon 1 of 1)	3873	NR_026964	26102		NR_026964	ENSG00000262075	DKFZP434A062	-	uncharacterized LOC26102	ncRNA
102517	chr17	75790351	75790730	+	0	NA	intron (NM_001080419, intron 1 of 15)	AluJo|SINE|Alu	5701	NR_038131	85451		NM_001080419	ENSG00000132478	UNK	UNKEMPT|ZC3H5|ZC3HDC5	unk zinc finger	protein-coding
147949	chr20	62958151	62958450	+	0	NA	intron (NM_022082, intron 3 of 12)	intron (NM_022082, intron 3 of 12)	5591	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
44185	chr11	96256151	96257150	+	0	NA	intron (NM_032427, intron 1 of 4)	L2c|LINE|L2	-84788	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
77414	chr15	83365471	83365630	+	0	NA	Intergenic	Intergenic	-80886	NM_001717	646		NM_001717	ENSG00000169594	BNC1	BNC|BSN1|HsT19447|POF16|bn1	basonuclin zinc finger protein 1	protein-coding
98660	chr17	47834571	47834730	+	0	NA	intron (NM_033413, intron 3 of 7)	L3b|LINE|CR1	2980	NM_033413	90506		NM_033413	ENSG00000141294	LRRC46	-	leucine rich repeat containing 46	protein-coding
189133	chr5	171207301	171207530	+	0	NA	intron (NM_022897, intron 20 of 27)	intron (NM_022897, intron 20 of 27)	-101833	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
160654	chr3	31596101	31596430	+	0	NA	intron (NM_178862, intron 3 of 15)	LTR41B|LTR|ERVL	63340	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
176745	chr4	101525751	101526050	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	178123	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
7184	chr1	32266351	32266450	+	0	NA	intron (NM_005356, intron 1 of 12)	AluY|SINE|Alu	-7711	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
100830	chr17	64109251	64110130	+	0	NA	intron (NM_001433, intron 1 of 21)	MIR3|SINE|MIR	20454	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
204089	chr7	2106971	2107130	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-17998	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
134087	chr2	131530801	131532000	+	0	NA	intron (NM_001349046, intron 3 of 6)	intron (NM_001349046, intron 3 of 6)	3512	NM_138770	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
124964	chr2	8684221	8685300	+	0	NA	TTS (NM_002166)	TTS (NM_002166)	2704	NM_002166	3398		NM_002166	ENSG00000115738	ID2	GIG8|ID2A|ID2H|bHLHb26	inhibitor of DNA binding 2	protein-coding
80334	chr16	2462221	2462480	+	0	NA	intron (NM_025108, intron 6 of 9)	intron (NM_025108, intron 6 of 9)	-1617	NR_106826	102465460		NR_106826	ENSG00000274805	MIR6768	hsa-mir-6768	microRNA 6768	ncRNA
163810	chr3	52429601	52429800	+	0	NA	Intergenic	Intergenic	15403	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
83741	chr16	28622851	28623750	+	0	NA	5' UTR (NM_177536, exon 1 of 6)	5' UTR (NM_177536, exon 1 of 6)	286	NM_177536	6817		NM_001055	ENSG00000196502	SULT1A1	HAST1/HAST2|P-PST|P-PST 1|PST|ST1A1|ST1A3|STP|STP1|TSPST1|ts-PST	sulfotransferase family 1A member 1	protein-coding
37224	chr11	14449371	14449730	+	0	NA	Intergenic	Intergenic	50261	NM_001144061	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
26307	chr10	15013971	15014150	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	21365	NR_144469	105376432		NR_144469		DCLRE1CP1	-	DNA cross-link repair 1C pseudogene 1	pseudo
177155	chr4	108135471	108136230	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	30947	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
128492	chr2	58251551	58251750	+	0	NA	Intergenic	(CCAGCC)n|Simple_repeat|Simple_repeat	-10270	NR_156742	55120		NM_018062	ENSG00000115392	FANCL	FAAP43|PHF9|POG	FA complementation group L	protein-coding
102491	chr17	75752551	75753080	+	0	NA	intron (NM_001005619, intron 31 of 38)	intron (NM_001005619, intron 31 of 38)	12377	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
210016	chr7	93245571	93246330	+	0	NA	intron (NM_024553, intron 2 of 11)	intron (NM_024553, intron 2 of 11)	13584	NM_017667	55610		NM_017667	ENSG00000004766	VPS50	CCDC132|NEDMSC|VPS54L	VPS50 subunit of EARP/GARPII complex	protein-coding
201609	chr6	149366201	149367200	+	0	NA	intron (NM_001369506, intron 2 of 7)	L1MEf|LINE|L1	-33562	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
131607	chr2	96891351	96892180	+	0	NA	intron (NM_016490, intron 2 of 4)	intron (NM_016490, intron 2 of 4)	3397	NM_001172667	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
142294	chr20	3244421	3244680	+	0	NA	Intergenic	Intergenic	-5360	NR_135000	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
102760	chr17	76279201	76280350	+	0	NA	intron (NM_032134, intron 12 of 18)	intron (NM_032134, intron 12 of 18)	14427	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
98695	chr17	47898151	47898330	+	0	NA	TTS (NR_103856)	TTS (NR_103856)	2004	NM_003110	6668		NM_003110	ENSG00000167182	SP2	-	Sp2 transcription factor	protein-coding
74753	chr15	63222171	63222700	+	0	NA	intron (NM_016530, intron 1 of 7)	LTR33A_|LTR|ERVL	32829	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
160904	chr3	33848251	33849250	+	0	NA	intron (NM_013374, intron 12 of 17)	intron (NM_013374, intron 12 of 17)	50120	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
117103	chr19	19194321	19194600	+	0	NA	intron (NM_134440, intron 3 of 8)	AluSq2|SINE|Alu	1525	NM_001370234	8625		NM_003721	ENSG00000064490	RFXANK	ANKRA1|BLS|F14150_1|RFX-B	regulatory factor X associated ankyrin containing protein	protein-coding
79346	chr16	591571	591730	+	0	NA	intron (NM_001172664, intron 2 of 6)	AluSc|SINE|Alu	1573	NM_001172665	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
3888	chr1	17018921	17019180	+	0	NA	intron (NM_003000, intron 7 of 7)	intron (NM_003000, intron 7 of 7)	-7122	NM_001141973	23400		NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9|SPG78	ATPase cation transporting 13A2	protein-coding
234330	chrX	14039321	14039680	+	0	NA	Intergenic	Intergenic	-9608	NM_001042479	54960		NM_017856	ENSG00000046647	GEMIN8	FAM51A1	gem nuclear organelle associated protein 8	protein-coding
216194	chr8	11848721	11849500	+	0	NA	exon (NM_001908, exon 5 of 10)	exon (NM_001908, exon 5 of 10)	18977	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
181122	chr5	37370501	37372130	+	0	NA	promoter-TSS (NM_001278312)	promoter-TSS (NM_001278312)	-209	NM_004298	9631		NM_004298	ENSG00000113569	NUP155	ATFB15|N155	nucleoporin 155	protein-coding
114661	chr19	13057901	13058380	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	33361	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
68082	chr14	75275741	75276080	+	0	NA	Intergenic	L2c|LINE|L2	-2918	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
30797	chr10	84378551	84378730	+	0	NA	intron (NM_001284240, intron 3 of 9)	AluSq10|SINE|Alu	-46299	NM_001284243	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
67166	chr14	68790481	68791380	+	0	NA	intron (NM_001244698, intron 1 of 2)	intron (NM_001244698, intron 1 of 2)	2137	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
18320	chr1	161178871	161179330	+	0	NA	Intergenic	AluJb|SINE|Alu	-1132	NM_001199873	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
235891	chrX	52896501	52897390	+	0	NA	promoter-TSS (NM_001321182)	promoter-TSS (NM_001321182)	4	NM_001321183	727866		NM_001099684	ENSG00000179304	FAM156B	TMEM29B	family with sequence similarity 156 member B	protein-coding
131957	chr2	99442871	99443030	+	0	NA	intron (NM_001321460, intron 4 of 23)	intron (NM_001321460, intron 4 of 23)	47067	NM_001321455	51455		NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1 DNA directed polymerase	protein-coding
201959	chr6	152124371	152124730	+	0	NA	intron (NM_001347701, intron 17 of 17)	intron (NM_001347701, intron 17 of 17)	43737	NM_001347702	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
57167	chr12	121396101	121396500	+	0	NA	Intergenic	AluSz|SINE|Alu	-3783	NM_025126	80196		NM_025126	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	ring finger protein 34	protein-coding
44684	chr11	111283301	111283500	+	0	NA	intron (NM_198498, intron 3 of 4)	intron (NM_198498, intron 3 of 4)	-15146	NM_001271458	120376		NM_001136105	ENSG00000214290	POU2AF3	C11orf93|CASC13|COLCA2|LOH11CR1G|OCA-T2	POU class 2 homeobox associating factor 3	protein-coding
109435	chr19	726951	727680	+	0	NA	intron (NM_002579, intron 3 of 8)	(CCCTGA)n|Simple_repeat|Simple_repeat	18380	NM_002579	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
130216	chr2	84693801	84694540	+	0	NA	intron (NM_001370, intron 45 of 76)	intron (NM_001370, intron 45 of 76)	177672	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
171755	chr3	198158201	198158400	+	0	NA	intron (NR_146164, intron 3 of 17)	intron (NR_146164, intron 3 of 17)	5094	NR_146164	728262		NM_001145248	ENSG00000290937	FAM157A	GTF2IP18	family with sequence similarity 157 member A	ncRNA
214287	chr7	149067751	149068080	+	0	NA	Intergenic	Intergenic	22803	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
229942	chr9	126653151	126653450	+	0	NA	intron (NM_001174147, intron 2 of 7)	AluJb|SINE|Alu	39372	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
24527	chr1	244838171	244838630	+	0	NA	intron (NM_001312872, intron 2 of 4)	L2a|LINE|L2	2742	NM_198076	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
173183	chr4	6751171	6752230	+	0	NA	Intergenic	Intergenic	-31027	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
155798	chr22	39301251	39301700	+	0	NA	Intergenic	L2b|LINE|L2	12436	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
115718	chr19	16236001	16236600	+	0	NA	3' UTR (NM_032493, exon 12 of 12)	3' UTR (NM_032493, exon 12 of 12)	38389	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
196821	chr6	46175351	46176300	+	0	NA	Intergenic	Intergenic	-4815	NM_001290073	59084		NM_021572	ENSG00000112796	ENPP5	NPP-5|NPP5	ectonucleotide pyrophosphatase/phosphodiesterase family member 5	protein-coding
145468	chr20	43736751	43737080	+	0	NA	Intergenic	MER66B|LTR|ERV1	-9913	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
212583	chr7	128940421	128941150	+	0	NA	promoter-TSS (NM_001364314)	promoter-TSS (NM_001364314)	115	NM_001098627	3663		NM_032643	ENSG00000128604	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
98194	chr17	46120021	46120500	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	72522	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
187722	chr5	143405101	143405930	+	0	NA	promoter-TSS (NM_001364180)	promoter-TSS (NM_001364180)	-160	NM_001364180	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
94630	chr17	30012051	30012150	+	0	NA	intron (NR_026738, intron 7 of 15)	LTR13|LTR|ERVK	70466	NM_198529	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
175823	chr4	77959601	77959830	+	0	NA	Intergenic	Intergenic	96885	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
123730	chr19	55057821	55058380	+	0	NA	intron (NM_001145971, intron 2 of 6).10	L1MB3|LINE|L1	5048	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
169993	chr3	179650751	179651250	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-2040	NM_003940	8975		NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13	protein-coding
124250	chr19	57558851	57560130	+	0	NA	intron (NM_001277090, intron 1 of 5)	CpG	373	NM_001277091	162972		NM_153231	ENSG00000251369	ZNF550	-	zinc finger protein 550	protein-coding
12846	chr1	110067021	110067480	+	0	NA	intron (NM_006492, intron 1 of 3)	intron (NM_006492, intron 1 of 3)	3422	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
232752	chr9	136661951	136662050	+	0	NA	promoter-TSS (NR_045111)	promoter-TSS (NR_045111)	-916	NR_045111	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
56014	chr12	110349351	110350580	+	0	NA	3' UTR (NM_170665, exon 20 of 20)	3' UTR (NM_170665, exon 20 of 20)	51984	NM_001385210	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
194157	chr6	32046001	32046400	+	0	NA	promoter-TSS (NM_032470).2	promoter-TSS (NM_032470).2	-72	NM_032470	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
228278	chr9	98072571	98072730	+	0	NA	intron (NM_018946, intron 2 of 5)	AluSg7|SINE|Alu	15918	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
136947	chr2	190338451	190338750	+	0	NA	Intergenic	LTR33|LTR|ERVL	-4989	NM_002194	3628		NM_002194	ENSG00000151689	INPP1	-	inositol polyphosphate-1-phosphatase	protein-coding
206949	chr7	38248221	38248480	+	0	NA	Intergenic	Intergenic	25297	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
111703	chr19	4299701	4299900	+	0	NA	intron (NM_144615, intron 1 of 4)	AluSx1|SINE|Alu	2631	NM_144615	126259		NM_144615	ENSG00000167664	TMIGD2	CD28H|IGPR-1|IGPR1	transmembrane and immunoglobulin domain containing 2	protein-coding
237635	chrX	124096971	124097400	+	0	NA	intron (NM_001042751, intron 33 of 33)	AluJo|SINE|Alu	135479	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
176174	chr4	83286071	83286230	+	0	NA	Intergenic	MIR|SINE|MIR	-1016	NM_015697	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
185566	chr5	131377621	131378200	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	113857	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
121901	chr19	48392751	48392850	+	0	NA	promoter-TSS (NM_000836)	promoter-TSS (NM_000836)	-868	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
140435	chr2	233130201	233130600	+	0	NA	intron (NM_001017915, intron 4 of 26).2	intron (NM_001017915, intron 4 of 26).2	70058	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
111954	chr19	4811421	4812200	+	0	NA	Intergenic	L2a|LINE|L2	19902	NM_001385680	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
159385	chr3	13413271	13413430	+	0	NA	intron (NM_024923, intron 1 of 39)	AluY|SINE|Alu	6972	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
129049	chr2	65062071	65062230	+	0	NA	intron (NM_015147, intron 1 of 6)	intron (NM_015147, intron 1 of 6)	5734	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
106199	chr18	11587621	11588080	+	0	NA	Intergenic	LTR49|LTR|ERV1	-21708	NM_001282300	646000		NM_001282300	ENSG00000236396	SLC35G4	AMAC1L1|SLC35G4P	solute carrier family 35 member G4	protein-coding
56837	chr12	120236921	120237350	+	0	NA	intron (NM_001080855, intron 1 of 11)	(TG)n|Simple_repeat|Simple_repeat	13028	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
236197	chrX	65674121	65675100	+	0	NA	intron (NM_002444, intron 1 of 12)	(AATTCTG)n|Simple_repeat|Simple_repeat	6956	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
32007	chr10	100992551	100992850	+	0	NA	intron (NR_160742, intron 4 of 4)	L2b|LINE|L2	-4371	NM_032429	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
104507	chr17	81228451	81228780	+	0	NA	promoter-TSS (NR_135654)	promoter-TSS (NR_135654)	-92	NR_135654	105371925		NR_135654		LOC105371925	-	uncharacterized LOC105371925	ncRNA
234509	chrX	19372371	19373380	+	0	NA	intron (NM_001001671, intron 21 of 28)	intron (NM_001001671, intron 21 of 28)	28948	NM_001173454	5160		NM_000284	ENSG00000131828	PDHA1	E1alpha|PDHA|PDHAD|PDHCE1A|PHE1A	pyruvate dehydrogenase E1 subunit alpha 1	protein-coding
84347	chr16	30203701	30203900	+	0	NA	TTS (NR_002556).2	TTS (NR_002556).2	3127	NR_002556	388242		NR_002556	ENSG00000290678	LOC388242	-	SAGA complex associated factor 29 pseudogene	pseudo
650	chr1	1351421	1352330	+	0	NA	TTS (NM_001282585)	TTS (NM_001282585)	-2457	NM_001330311	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
51610	chr12	52873271	52874900	+	0	NA	Intergenic	CpG	24899	NR_162090	113218482		NR_162090		MIR9898	-	microRNA 9898	ncRNA
111604	chr19	4101351	4101650	+	0	NA	intron (NM_030662, intron 4 of 10)	CpG-13368	22622	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
121651	chr19	47486221	47486480	+	0	NA	intron (NR_038452, intron 1 of 3)	AluSx|SINE|Alu	2068	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
129192	chr2	68195251	68195550	+	0	NA	intron (NM_000945, intron 2 of 5)	L1MC4a|LINE|L1	37512	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
106042	chr18	8744471	8745250	+	0	NA	intron (NM_015210, intron 4 of 16)	intron (NM_015210, intron 4 of 16)	27479	NM_015210	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
152895	chr22	22731471	22731630	+	0	NA	Intergenic	Intergenic	85238	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
112815	chr19	7507921	7508900	+	0	NA	TTS (NM_198534)	TTS (NM_198534)	-7693	NM_018083	140467		NM_018083	ENSG00000198816	ZNF358	ZFEND	zinc finger protein 358	protein-coding
1761	chr1	6022771	6023330	+	0	NA	intron (NM_001199861, intron 1 of 15)	AluSx1|SINE|Alu	-3283	NM_172130	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
114084	chr19	11106201	11106400	+	0	NA	intron (NM_000527, intron 4 of 17)	AluJo|SINE|Alu	-7174	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
7191	chr1	32272151	32274780	+	0	NA	promoter-TSS (NM_001042771)	promoter-TSS (NM_001042771)	-646	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
791	chr1	1539601	1541250	+	0	NA	5' UTR (NM_001114748, exon 1 of 4)	5' UTR (NM_001114748, exon 1 of 4)	199	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
9233	chr1	45785271	45786280	+	0	NA	Intergenic	Intergenic	-17832	NM_001324320	23139		NM_015112	ENSG00000086015	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
9385	chr1	47332371	47332800	+	0	NA	Intergenic	L2a|LINE|L2	-1205	NM_001136140	51727		NM_016308	ENSG00000162368	CMPK1	CK|CMK|CMPK|UMK|UMP-CMPK|UMPK	cytidine/uridine monophosphate kinase 1	protein-coding
188433	chr5	154405051	154405610	+	0	NA	intron (NM_198321, intron 8 of 11)	CpG	40492	NR_037897	386627		NR_037897	ENSG00000245275	SAP30L-AS1	GALNT10-AS1	SAP30L antisense RNA 1 (head to head)	ncRNA
71497	chr14	106004801	106005700	+	0	NA	Intergenic	Intergenic	-32981	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
231060	chr9	129636501	129636700	+	0	NA	TTS (NM_001286803)	TTS (NM_001286803)	5551	NM_177999	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
102203	chr17	75179521	75179780	+	0	NA	intron (NM_006937, intron 2 of 3)	intron (NM_006937, intron 2 of 3)	3309	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
37172	chr11	13962371	13962980	+	0	NA	promoter-TSS (NM_006108)	promoter-TSS (NM_006108)	-48	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
199120	chr6	111692371	111693100	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	66396	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
129227	chr2	68247671	68247830	+	0	NA	intron (NM_000945, intron 1 of 5)	L2c|LINE|L2	4782	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
142439	chr20	3929101	3930150	+	0	NA	non-coding (NR_136715, exon 7 of 7)	non-coding (NR_136715, exon 7 of 7)	-12062	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
121378	chr19	46865201	46865400	+	0	NA	intron (NM_004491, intron 1 of 6)	intron (NM_004491, intron 1 of 6)	4303	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
183844	chr5	87019721	87020380	+	0	NA	Intergenic	Intergenic	94904	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
65104	chr14	41742901	41743100	+	0	NA	intron (NM_001346173, intron 1 of 4)	intron (NM_001346173, intron 1 of 4)	136144	NM_001330106	145581		NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
128937	chr2	64534121	64534630	+	0	NA	intron (NM_203437, intron 1 of 9)	intron (NM_203437, intron 1 of 9)	8862	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
31580	chr10	97338451	97338750	+	0	NA	Intergenic	MIR|SINE|MIR	-3871	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
154397	chr22	35308351	35309100	+	0	NA	intron (NR_156428, intron 1 of 13)	intron (NR_156428, intron 1 of 13)	8831	NR_156428	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
114317	chr19	11988221	11989200	+	0	NA	intron (NR_134929, intron 1 of 2)	LTR13_|LTR|ERVK	1093	NR_134928	101928464		NR_134927	ENSG00000219665	ZNF433-AS1	-	ZNF433 and ZNF878 antisense RNA 1	ncRNA
207131	chr7	42929451	42929750	+	0	NA	intron (NM_002787, intron 1 of 7)	L2b|LINE|L2	2574	NM_002787	5683		NM_002787	ENSG00000106588	PSMA2	HC3|MU|PMSA2|PSC2	proteasome 20S subunit alpha 2	protein-coding
43593	chr11	83157801	83158580	+	0	NA	intron (NM_015885, intron 1 of 15)	intron (NM_015885, intron 1 of 15)	1059	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
230386	chr9	128092921	128093550	+	0	NA	intron (NM_001265614, intron 1 of 10)	intron (NM_001265614, intron 1 of 10)	1771	NM_001265614	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
160248	chr3	23991751	23992050	+	0	NA	Intergenic	Intergenic	-45338	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
106924	chr18	26215371	26216330	+	0	NA	Intergenic	Intergenic	-10595	NR_121653	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
129343	chr2	68753171	68754200	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	18308	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
79004	chr16	17171	17900	+	0	NA	promoter-TSS (NR_106918).4	promoter-TSS (NR_106918).4	-416	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
45914	chr11	120715251	120715430	+	0	NA	intron (NM_001282473, intron 3 of 17)	intron (NM_001282473, intron 3 of 17)	103775	NR_133008	105369532		NR_133008		LOC105369532	-	uncharacterized LOC105369532	ncRNA
19526	chr1	176193271	176193630	+	0	NA	intron (NM_022457, intron 1 of 19)	L1MB7|LINE|L1	13794	NM_001001740	64326		NM_022457	ENSG00000143207	COP1	CFAP78|FAP78|RFWD2|RNF200	COP1 E3 ubiquitin ligase	protein-coding
104886	chr17	81881321	81881780	+	0	NA	Intergenic	Intergenic	-9240	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
145837	chr20	45835271	45835650	+	0	NA	intron (NM_152897, intron 3 of 4)	intron (NM_152897, intron 3 of 4)	1661	NM_001042633	90203		NM_033421	ENSG00000124104	SNX21	C20orf161|PP3993|SNX-L|SNXL|dJ337O18.4	sorting nexin family member 21	protein-coding
38263	chr11	36684801	36685200	+	0	NA	Intergenic	Intergenic	-86721	NM_001243786	5897		NM_000536	ENSG00000175097	RAG2	RAG-2	recombination activating 2	protein-coding
236222	chrX	65705021	65705580	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	37646	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
223613	chr8	144316651	144316750	+	0	NA	TTS (NR_106907)	TTS (NR_106907)	615	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
206588	chr7	35721121	35721580	+	0	NA	Intergenic	Intergenic	4913	NR_108082	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
110819	chr19	2482671	2483050	+	0	NA	Intergenic	Intergenic	6733	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
74061	chr15	52559301	52559850	+	0	NA	intron (NM_006628, intron 1 of 2)	MamRep137|DNA|TcMar-Tigger	9257	NM_001330309	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
150899	chr21	44155521	44156570	+	0	NA	Intergenic	Intergenic	3817	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
78540	chr15	92964351	92964650	+	0	NA	intron (NM_001271, intron 16 of 38)	intron (NM_001271, intron 16 of 38)	60101	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
87499	chr16	71808321	71809900	+	0	NA	promoter-TSS (NM_001030007)	promoter-TSS (NM_001030007)	-276	NM_001128	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
39696	chr11	61737771	61738130	+	0	NA	intron (NM_006133, intron 15 of 19)	intron (NM_006133, intron 15 of 19)	-14686	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
132304	chr2	105236971	105237380	+	0	NA	Intergenic	CpG	-4568	NM_007227	11250		NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
157522	chr22	45353821	45354280	+	0	NA	exon (NM_001291501, exon 21 of 23)	exon (NM_001291501, exon 21 of 23)	35607	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
81332	chr16	4746321	4746580	+	0	NA	exon (NM_139170, exon 7 of 10)	exon (NM_139170, exon 7 of 10)	11913	NM_139170	146562		NM_139170	ENSG00000166246	DNAAF8	C16orf71|Daap1	dynein axonemal assembly factor 8	protein-coding
5353	chr1	25329901	25331400	+	0	NA	TTS (NM_001127691)	TTS (NM_001127691)	7604	NM_001321772	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
155766	chr22	39231421	39231680	+	0	NA	intron (NM_033016, intron 4 of 6)	intron (NM_033016, intron 4 of 6)	9359	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
58468	chr12	132138971	132139430	+	0	NA	3' UTR (NM_175066, exon 15 of 15)	3' UTR (NM_175066, exon 15 of 15)	5119	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
88028	chr16	81098171	81098530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1955	NR_033249	2653		NM_004483	ENSG00000140905	GCSH	GCE|MMDS7|NKH	glycine cleavage system protein H	protein-coding
145496	chr20	43949721	43951030	+	0	NA	intron (NM_001098798, intron 1 of 7)	intron (NM_001098798, intron 1 of 7)	4479	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
219295	chr8	69764171	69764330	+	0	NA	intron (NM_030958, intron 2 of 9)	intron (NM_030958, intron 2 of 9)	68919	NM_001146009	81796		NM_030958	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15	solute carrier organic anion transporter family member 5A1	protein-coding
176402	chr4	88827701	88828100	+	0	NA	intron (NM_014883, intron 7 of 23)	intron (NM_014883, intron 7 of 23)	-4539	NM_001015045	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
58100	chr12	124738921	124739280	+	0	NA	Intergenic	CpG	100571	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
133662	chr2	127058251	127058570	+	0	NA	intron (NM_139346, intron 11 of 15)	intron (NM_139346, intron 11 of 15)	23655	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
132031	chr2	100941021	100941600	+	0	NA	intron (NM_002518, intron 5 of 20)	AluSz6|SINE|Alu	35851	NR_110213	101927142		NR_110213		NPAS2-AS1	-	NPAS2 antisense RNA 1	ncRNA
59152	chr13	21569721	21569980	+	0	NA	intron (NM_152726, intron 1 of 11)	MIR|SINE|MIR	34320	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
229024	chr9	114107901	114108200	+	0	NA	Intergenic	Intergenic	-8993	NM_138424	113220		NM_138424	ENSG00000136883	KIF12	PFIC8	kinesin family member 12	protein-coding
69421	chr14	94072151	94072250	+	0	NA	intron (NM_020414, intron 2 of 8).2	L1PB1|LINE|L1	9002	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
70961	chr14	104690901	104691500	+	0	NA	intron (NM_032714, intron 1 of 4)	intron (NM_032714, intron 1 of 4)	1582	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
91385	chr17	4573421	4573900	+	0	NA	Intergenic	Intergenic	-10347	NM_198501	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
116208	chr19	17497671	17498030	+	0	NA	intron (NM_198580, intron 7 of 11)	AluJo|SINE|Alu	-13799	NM_012088	25796		NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
223714	chr8	144454721	144454980	+	0	NA	intron (NM_138496, intron 2 of 4)	intron (NM_138496, intron 2 of 4)	7689	NR_162109	113218512		NR_162109		MIR10400	-	microRNA 10400	ncRNA
61755	chr13	74250771	74251200	+	0	NA	intron (NR_144451, intron 1 of 1)	intron (NR_144451, intron 1 of 1)	19541	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
185598	chr5	131410951	131411330	+	0	NA	Intergenic	AluJb|SINE|Alu	147087	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
96557	chr17	40425251	40426100	+	0	NA	Intergenic	Intergenic	-7779	NM_001067	7153		NM_001067	ENSG00000131747	TOP2A	TOP2|TOP2alpha|TOPIIA|TP2A	DNA topoisomerase II alpha	protein-coding
1996	chr1	6720021	6720650	+	0	NA	Intergenic	Intergenic	-4410	NR_104620	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
239390	chrY	21254551	21254650	+	0	NA	Intergenic	L1M1|LINE|L1	131760	NM_001282471	100533178		NM_001282471		PRORY	CYorf17	PRORY Y-linked lncRNA	ncRNA
155284	chr22	38104821	38105280	+	0	NA	intron (NM_025045, intron 4 of 13)	L1ME3B|LINE|L1	5634	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
199773	chr6	125955871	125957450	+	0	NA	promoter-TSS (NM_138571)	promoter-TSS (NM_138571)	-110	NM_138571	135114		NM_138571	ENSG00000111911	HINT3	HINT4	histidine triad nucleotide binding protein 3	protein-coding
198856	chr6	109377551	109378130	+	0	NA	intron (NM_001142402, intron 3 of 4)	intron (NM_001142402, intron 3 of 4)	3899	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
196570	chr6	44130121	44130650	+	0	NA	intron (NM_018426, intron 1 of 23)	MIR|SINE|MIR	2831	NM_018426	55362		NM_018426	ENSG00000137216	TMEM63B	C6orf110	transmembrane protein 63B	protein-coding
105480	chr17	83072921	83073200	+	0	NA	Intergenic	Intergenic	-6549	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
152722	chr22	21659101	21659300	+	0	NA	intron (NR_169734, intron 3 of 4)	L1MC5a|LINE|L1	1440	NR_169733	107985532		NR_169729		LOC107985532	-	uncharacterized LOC107985532	pseudo
9557	chr1	51616001	51616200	+	0	NA	promoter-TSS (NM_148908)	promoter-TSS (NM_148908)	-992	NM_148906	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
48893	chr12	12529971	12530530	+	0	NA	intron (NM_030640, intron 1 of 6)	L1MA8|LINE|L1	32613	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
118065	chr19	34316851	34316950	+	0	NA	intron (NM_014686, intron 2 of 13)	intron (NM_014686, intron 2 of 13)	-47840	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
48922	chr12	12645601	12646080	+	0	NA	TTS (NM_001310)	TTS (NM_001310)	33964	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
191748	chr6	13811451	13811750	+	0	NA	intron (NM_001031713, intron 1 of 8)	intron (NM_001031713, intron 1 of 8)	2960	NM_001031713	63933		NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
61275	chr13	50118421	50118680	+	0	NA	intron (NR_109974, intron 2 of 6)	L1ME4a|LINE|L1	6991	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
232880	chr9	136834651	136834950	+	0	NA	TTS (NM_001173989)	TTS (NM_001173989)	3843	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
184193	chr5	95846801	95847400	+	0	NA	intron (NR_157807, intron 2 of 2)	intron (NR_157807, intron 2 of 2)	-5132	NR_026936	202299		NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
73840	chr15	49471271	49471430	+	0	NA	intron (NM_002009, intron 2 of 3)	AluSx|SINE|Alu	48108	NM_002009	2252		NM_002009	ENSG00000140285	FGF7	HBGF-7|KGF	fibroblast growth factor 7	protein-coding
129076	chr2	65100851	65101150	+	0	NA	intron (NM_004161, intron 2 of 5)	AluSz|SINE|Alu	29106	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
10935	chr1	84151521	84151780	+	0	NA	intron (NM_182948, intron 1 of 9)	Tigger1|DNA|TcMar-Tigger	7379	NM_001300916	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
222470	chr8	140091571	140091950	+	0	NA	intron (NR_164662, intron 16 of 22)	intron (NR_164662, intron 16 of 22)	8775	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
154891	chr22	37157171	37157730	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	-7534	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
206976	chr7	38313671	38314180	+	0	NA	Intergenic	Intergenic	-27652	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
114811	chr19	13804751	13805250	+	0	NA	exon (NM_001367834, exon 3 of 14)	exon (NM_001367834, exon 3 of 14)	9557	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
163589	chr3	51970001	51970200	+	0	NA	exon (NM_001146314, exon 3 of 4)	exon (NM_001146314, exon 3 of 4)	-2634	NM_001363885	57060		NM_020418	ENSG00000090097	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding
5883	chr1	26784951	26785300	+	0	NA	Intergenic	L2a|LINE|L2	-1929	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
88156	chr16	81682101	81682500	+	0	NA	intron (NM_030629, intron 10 of 20)	AluSp|SINE|Alu	16946	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
133916	chr2	130344601	130344900	+	0	NA	intron (NM_001320307, intron 3 of 8)	intron (NM_001320307, intron 3 of 8)	1480	NM_001371731	92856		NM_033416	ENSG00000136718	IMP4	BXDC4	IMP U3 small nucleolar ribonucleoprotein 4	protein-coding
67181	chr14	68821471	68821700	+	0	NA	Intergenic	Intergenic	-25342	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
155330	chr22	38218551	38219630	+	0	NA	TTS (NM_012264)	TTS (NM_012264)	5630	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
170112	chr3	183179021	183179980	+	0	NA	exon (NM_015078, exon 30 of 30)	exon (NM_015078, exon 30 of 30)	-16766	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
47578	chr12	4538341	4539280	+	0	NA	promoter-TSS (NM_001346155)	promoter-TSS (NM_001346155)	-80	NM_006479	10635		NM_006479	ENSG00000111247	RAD51AP1	PIR51	RAD51 associated protein 1	protein-coding
10457	chr1	66300621	66301680	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-30958	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
114536	chr19	12845271	12845830	+	0	NA	intron (NM_014975, intron 4 of 25)	AluJb|SINE|Alu	-6710	NR_106852	102466196		NR_106852	ENSG00000276181	MIR6794	hsa-mir-6794	microRNA 6794	ncRNA
199674	chr6	122466971	122467530	+	0	NA	intron (NM_020755, intron 1 of 9)	HAL1|LINE|L1	4557	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
46949	chr11	134412021	134413600	+	0	NA	promoter-TSS (NM_001367973)	promoter-TSS (NM_001367973)	-568	NM_001367973	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
21693	chr1	206728001	206728200	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	42503	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
193769	chr6	31355601	31357800	+	0	NA	exon (NM_005514, exon 2 of 8).5	exon (NM_005514, exon 2 of 8).5	479	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
216838	chr8	22593301	22593980	+	0	NA	intron (NM_176871, intron 8 of 9)	intron (NM_176871, intron 8 of 9)	-5959	NM_001013842	541565		NM_173686	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
187895	chr5	148829751	148830380	+	0	NA	Intergenic	Intergenic	3454	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
67888	chr14	74425671	74426600	+	0	NA	promoter-TSS (NM_001105579)	promoter-TSS (NM_001105579)	75	NM_001105579	646658		NM_001105579	ENSG00000183379	SYNDIG1L	CAPUCIN|DSPC1|IFITMD4|SynDIG2|TMEM90A	synapse differentiation inducing 1 like	protein-coding
163660	chr3	52216401	52216600	+	0	NA	Intergenic	AluSz|SINE|Alu	9663	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
5420	chr1	25551271	25551430	+	0	NA	intron (NM_015627, intron 1 of 8)	intron (NM_015627, intron 1 of 8)	7744	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
145004	chr20	37615801	37616180	+	0	NA	Intergenic	Intergenic	7129	NR_047461	100861522		NR_047461	ENSG00000225759	LINC00489	-	long intergenic non-protein coding RNA 489	ncRNA
60125	chr13	39017901	39018430	+	0	NA	intron (NM_170719, intron 8 of 11)	intron (NM_170719, intron 8 of 11)	19911	NM_170719	80209		NM_025138	ENSG00000120685	PROSER1	C13orf23	proline and serine rich 1	protein-coding
33921	chr10	124602951	124603250	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-100928	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
145331	chr20	41095101	41095680	+	0	NA	intron (NM_003286, intron 9 of 20)	(TTTCA)n|Simple_repeat|Simple_repeat	-42153	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
14035	chr1	120744301	120744830	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	20626	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
123398	chr19	53942151	53942780	+	0	NA	exon (NM_001384801, exon 5 of 5)	exon (NM_001384801, exon 5 of 5)	-20472	NM_031895	59283		NM_031895	ENSG00000142408	CACNG8	-	calcium voltage-gated channel auxiliary subunit gamma 8	protein-coding
138598	chr2	208135101	208135300	+	0	NA	intron (NR_038437, intron 1 of 2)	intron (NR_038437, intron 1 of 2)	-5372	NM_020989	1420		NM_020989	ENSG00000163254	CRYGC	CCL|CRYG3|CTRCT2	crystallin gamma C	protein-coding
144890	chr20	36930251	36931450	+	0	NA	exon (NM_015474, exon 5 of 16)	exon (NM_015474, exon 5 of 16)	20858	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
227981	chr9	95343671	95344030	+	0	NA	Intergenic	MIRc|SINE|MIR	-26141	NM_000136	2176		NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	FA complementation group C	protein-coding
27988	chr10	43076671	43077450	+	0	NA	promoter-TSS (NM_020630)	promoter-TSS (NM_020630)	-9	NM_020975	5979		NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1	ret proto-oncogene	protein-coding
50976	chr12	49557051	49557150	+	0	NA	intron (NM_001314030, intron 13 of 14)	intron (NM_001314030, intron 13 of 14)	9339	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
40707	chr11	64790071	64790430	+	0	NA	exon (NM_001307990, exon 29 of 32)	exon (NM_001307990, exon 29 of 32)	-11708	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
69509	chr14	95774371	95774630	+	0	NA	Intergenic	Intergenic	59017	NR_148060	107984703		NR_148060		LOC107984703	-	uncharacterized LOC107984703	ncRNA
156252	chr22	40405301	40405500	+	0	NA	intron (NM_001350047, intron 6 of 20)	intron (NM_001350047, intron 6 of 20)	34806	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
35763	chr11	2151401	2152830	+	0	NA	intron (NM_001042376, intron 2 of 4)	intron (NM_001042376, intron 2 of 4)	-2512	NM_001007139	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
34488	chr10	132538771	132539000	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	1098	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
161969	chr3	46286771	46287530	+	0	NA	Intergenic	Intergenic	44690	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
215394	chr7	157483701	157484100	+	0	NA	intron (NR_110157, intron 2 of 3)	intron (NR_110157, intron 2 of 3)	17669	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
88398	chr16	84632051	84632350	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	-14122	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
108187	chr18	63092201	63092600	+	0	NA	Intergenic	Intergenic	227369	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
238189	chrX	136911051	136911150	+	0	NA	Intergenic	Intergenic	-30320	NR_028476	27316		NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|MRXSG|MRXSH|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein X-linked	protein-coding
200664	chr6	137136101	137136350	+	0	NA	Intergenic	L1MA9|LINE|L1	37419	NM_181309	116379		NM_052962	ENSG00000164485	IL22RA2	CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16	interleukin 22 receptor subunit alpha 2	protein-coding
84149	chr16	29742771	29743300	+	0	NA	3' UTR (NM_175900, exon 2 of 2)	3' UTR (NM_175900, exon 2 of 2)	2955	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
217684	chr8	30114021	30114830	+	0	NA	intron (NM_001128208, intron 3 of 3)	AluSx1|SINE|Alu	19017	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
85176	chr16	46826771	46827150	+	0	NA	intron (NM_001001436, intron 1 of 3)	intron (NM_001001436, intron 1 of 3)	4088	NR_145837	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
89087	chr16	88475671	88476500	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	7167	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
27239	chr10	29496351	29496680	+	0	NA	intron (NM_021738, intron 18 of 37)	intron (NM_021738, intron 18 of 37)	48582	NR_030335	693189		NR_030335	ENSG00000207612	MIR604	MIRN604|hsa-mir-604	microRNA 604	ncRNA
101117	chr17	65021901	65022430	+	0	NA	intron (NM_001282425, intron 2 of 3)	Cheshire|DNA|hAT-Charlie	33609	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
231119	chr9	129827901	129828650	+	0	NA	intron (NM_016520, intron 8 of 8)	intron (NM_016520, intron 8 of 8)	-4139	NM_000113	1861		NM_000113	ENSG00000136827	TOR1A	AMC5|DQ2|DYT1	torsin family 1 member A	protein-coding
61622	chr13	73718471	73718630	+	0	NA	intron (NM_007249, intron 6 of 7)	AluSz|SINE|Alu	154306	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
224447	chr9	15420971	15421130	+	0	NA	Intergenic	L1MB8|LINE|L1	-1734	NM_001039697	6619		NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
193835	chr6	31499651	31500530	+	0	NA	intron (NM_005931, intron 1 of 5).4	intron (NM_005931, intron 1 of 5).4	1945	NM_001289161	4277		NM_005931	ENSG00000204516	MICB	PERB11.2	MHC class I polypeptide-related sequence B	protein-coding
179524	chr4	184823671	184823830	+	0	NA	intron (NM_001381885, intron 1 of 21)	intron (NM_001381885, intron 1 of 21)	2218	NM_001995	2180		NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long chain family member 1	protein-coding
123366	chr19	53892151	53892550	+	0	NA	intron (NM_001316329, intron 6 of 18)	intron (NM_001316329, intron 6 of 18)	10153	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
76862	chr15	77909321	77909580	+	0	NA	Intergenic	Intergenic	17396	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
138566	chr2	207709971	207710130	+	0	NA	Intergenic	AluSz|SINE|Alu	-1490	NM_001142300	151195		NM_152523	ENSG00000163249	CCNYL1	-	cyclin Y like 1	protein-coding
219413	chr8	70654521	70654780	+	0	NA	intron (NR_038881, intron 3 of 3)	7SLRNA|srpRNA|srpRNA	14535	NM_016027	51110		NM_016027	ENSG00000147592	LACTB2	CGI-83	lactamase beta 2	protein-coding
230501	chr9	128254451	128254630	+	0	NA	3' UTR (NM_001288738, exon 23 of 23)	3' UTR (NM_001288738, exon 23 of 23)	-9510	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
192002	chr6	16322301	16324100	+	0	NA	intron (NM_000332, intron 8 of 8)	intron (NM_000332, intron 8 of 8)	84613	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
51041	chr12	49766901	49767630	+	0	NA	Intergenic	AluSz|SINE|Alu	25456	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
184342	chr5	96957251	96959280	+	0	NA	promoter-TSS (NM_175920)	promoter-TSS (NM_175920)	-168	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
55049	chr12	96419651	96420300	+	0	NA	Intergenic	AluJo|SINE|Alu	-19536	NM_001170464	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
196327	chr6	43143371	43144080	+	0	NA	intron (NR_072998, intron 14 of 18)	intron (NR_072998, intron 14 of 18)	-27544	NM_003131	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
54076	chr12	76044901	76045300	+	0	NA	3' UTR (NM_004537, exon 15 of 15)	3' UTR (NM_004537, exon 15 of 15)	-13324	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
196243	chr6	42888251	42888750	+	0	NA	non-coding (NR_134563, exon 6 of 6)	non-coding (NR_134563, exon 6 of 6)	2321	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
202833	chr6	159730901	159731630	+	0	NA	intron (NM_001322817, intron 2 of 7)	AluJo|SINE|Alu	3759	NM_001270533	9589		NM_004906	ENSG00000146457	WTAP	Mum2	WT1 associated protein	protein-coding
163948	chr3	52851351	52851650	+	0	NA	intron (NM_001198974, intron 3 of 9)	intron (NM_001198974, intron 3 of 9)	-4948	NR_107031	102465866		NR_107031	ENSG00000275789	MIR8064	hsa-mir-8064	microRNA 8064	ncRNA
16384	chr1	154400651	154400750	+	0	NA	Intergenic	L1MB3|LINE|L1	-4643	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
147872	chr20	62825971	62826130	+	0	NA	intron (NM_001853, intron 13 of 31)	intron (NM_001853, intron 13 of 31)	9000	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
54283	chr12	89235601	89236200	+	0	NA	Intergenic	L2c|LINE|L2	116601	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
30549	chr10	79694871	79695030	+	0	NA	intron (NR_120613, intron 6 of 6)	intron (NR_120613, intron 6 of 6)	-8277	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
216467	chr8	19688001	19688200	+	0	NA	intron (NM_001354476, intron 1 of 8)	MIRb|SINE|MIR	-5339	NR_024040	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
175241	chr4	57109901	57110250	+	0	NA	exon (NM_001253835, exon 1 of 4)	exon (NM_001253835, exon 1 of 4)	310	NM_001553	3490		NM_001553	ENSG00000163453	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin like growth factor binding protein 7	protein-coding
137261	chr2	193482651	193482830	+	0	NA	Intergenic	Intergenic	732895	NR_152587	64002		NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1 prostate-specific transcript	ncRNA
176620	chr4	99561121	99561730	+	0	NA	intron (NM_001375882, intron 1 of 7)	intron (NM_001375882, intron 1 of 7)	2298	NM_152292	93587		NM_152292	ENSG00000145331	TRMT10A	HEL-S-88|MSSGM|MSSGM1|RG9MTD2|TRM10	tRNA methyltransferase 10A	protein-coding
237552	chrX	120603471	120604740	+	0	NA	promoter-TSS (NM_014060)	promoter-TSS (NM_014060)	4	NM_014060	28985		NM_014060	ENSG00000232119	MCTS1	IMD118|MCT-1|MCT1	MCTS1 re-initiation and release factor	protein-coding
135433	chr2	161168601	161168800	+	0	NA	intron (NM_001199135, intron 1 of 7)	AluSx|SINE|Alu	8272	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
220682	chr8	101207571	101207930	+	0	NA	Intergenic	Charlie24|DNA|hAT-Charlie	-1686	NM_001267709	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
134035	chr2	131095151	131095680	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1955	NM_001321744	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
57369	chr12	121791551	121792200	+	0	NA	intron (NM_019034, intron 2 of 4)	intron (NM_019034, intron 2 of 4)	1813	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
217783	chr8	33483201	33483600	+	0	NA	Intergenic	MER41A|LTR|ERV1	-1782	NM_032509	84549		NM_032509	ENSG00000198042	MAK16	MAK16L|RBM13	MAK16 homolog	protein-coding
77132	chr15	79381021	79381550	+	0	NA	intron (NM_001330376, intron 2 of 2)	intron (NM_001330376, intron 2 of 2)	-51051	NM_015206	23251		NM_015206	ENSG00000169330	MINAR1	KIAA1024|UBTOR	membrane integral NOTCH2 associated receptor 1	protein-coding
182522	chr5	65482631	65483220	+	0	NA	Intergenic	Intergenic	-1005	NM_197941	11174		NM_014273	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein-coding
200763	chr6	137823821	137825280	+	0	NA	non-coding (NR_049793, exon 4 of 4)	non-coding (NR_049793, exon 4 of 4)	-42709	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
9855	chr1	54280501	54281300	+	0	NA	intron (NM_145716, intron 5 of 17)	intron (NM_145716, intron 5 of 17)	44457	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
23459	chr1	228512951	228513330	+	0	NA	promoter-TSS (NM_001287262)	promoter-TSS (NM_001287262)	-852	NM_001287262	100129094		NM_001287262		BTNL10P	BTN4|BTNL10|BUTR1	butyrophilin like 10, pseudogene	pseudo
140845	chr2	237085351	237086430	+	0	NA	promoter-TSS (NM_006710)	promoter-TSS (NM_006710)	1	NM_006710	10920		NM_006710	ENSG00000198612	COPS8	COP9|CSN8|SGN8	COP9 signalosome subunit 8	protein-coding
136996	chr2	190551921	190552380	+	0	NA	Intergenic	HAL1M8|LINE|L1	-17428	NR_136298	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
140370	chr2	232898071	232898230	+	0	NA	intron (NM_001114090, intron 3 of 12)	intron (NM_001114090, intron 3 of 12)	22318	NR_144372	389084		NM_206895	ENSG00000182600	SNORC	ASCL830|C2orf82|UNQ830	secondary ossification center associated regulator of chondrocyte maturation	protein-coding
4526	chr1	21820271	21820450	+	0	NA	intron (NM_001013693, intron 3 of 4)	AluYc|SINE|Alu	8095	NM_001013693	401944		NM_001013693	ENSG00000187942	LDLRAD2	-	low density lipoprotein receptor class A domain containing 2	protein-coding
168336	chr3	141845401	141845730	+	0	NA	Intergenic	Intergenic	-31078	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
70802	chr14	103542121	103542850	+	0	NA	Intergenic	Intergenic	13289	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
211981	chr7	113086051	113086880	+	0	NA	promoter-TSS (NM_001146266)	promoter-TSS (NM_001146266)	-298	NM_001146266	54329		NM_018970	ENSG00000164604	GPR85	SREB|SREB2	G protein-coupled receptor 85	protein-coding
228614	chr9	105426071	105426230	+	0	NA	intron (NM_001330731, intron 15 of 15)	intron (NM_001330731, intron 15 of 15)	-21884	NM_001287192	83856		NM_031919	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1 like	protein-coding
10610	chr1	67685901	67687280	+	0	NA	intron (NM_001924, intron 3 of 3)	intron (NM_001924, intron 3 of 3)	1389	NM_001199741	1647		NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
25393	chr10	6504121	6504880	+	0	NA	intron (NM_001282645, intron 3 of 16)	intron (NM_001282645, intron 3 of 16)	75776	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
197494	chr6	75611801	75612250	+	0	NA	intron (NM_015571, intron 1 of 23)	intron (NM_015571, intron 1 of 23)	10145	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
224331	chr9	6760401	6760830	+	0	NA	intron (NR_148677, intron 1 of 21)	AluY|SINE|Alu	2642	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
36332	chr11	3878771	3878930	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	22788	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
139544	chr2	224779821	224780080	+	0	NA	intron (NM_001363762, intron 50 of 55)	L2b|LINE|L2	167099	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
96231	chr17	39792521	39793650	+	0	NA	intron (NM_001257408, intron 2 of 6)	intron (NM_001257408, intron 2 of 6)	-14860	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
46767	chr11	129853671	129854630	+	0	NA	intron (NM_001331210, intron 3 of 6)	intron (NM_001331210, intron 3 of 6)	38302	NM_138788	120224		NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
225890	chr9	39712551	39712850	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	97459	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
2875	chr1	11473671	11473900	+	0	NA	Intergenic	Intergenic	-5370	NM_020780	57540		NM_020780	ENSG00000204624	DISP3	PTCHD2	dispatched RND transporter family member 3	protein-coding
150371	chr21	42231671	42231930	+	0	NA	intron (NM_207628, intron 4 of 16)	intron (NM_207628, intron 4 of 16)	11902	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
208578	chr7	72877451	72877750	+	0	NA	Intergenic	MER4D|LTR|ERV1	-1757	NM_001367610	9883		NM_014833	ENSG00000196313	POM121	P145|POM121A	POM121 transmembrane nucleoporin	protein-coding
138762	chr2	215949921	215950230	+	0	NA	intron (NM_001372189, intron 2 of 4)	intron (NM_001372189, intron 2 of 4)	63476	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
221684	chr8	126500871	126501300	+	0	NA	Intergenic	Intergenic	57393	NM_174911	157638		NM_174911	ENSG00000168672	LRATD2	BCMP101|FAM84B|NSE2	LRAT domain containing 2	protein-coding
22245	chr1	212613401	212613600	+	0	NA	intron (NM_001206484, intron 2 of 4)	MIRb|SINE|MIR	-1518	NM_001206486	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
224004	chr9	2179571	2179730	+	0	NA	intron (NM_003070, intron 29 of 33)	intron (NM_003070, intron 29 of 33)	21194	NM_001289400	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
126318	chr2	27322451	27323800	+	0	NA	promoter-TSS (NM_002437)	promoter-TSS (NM_002437)	-28	NM_002437	4358		NM_002437	ENSG00000115204	MPV17	CMT2EE|MTDPS6|SYM1	mitochondrial inner membrane protein MPV17	protein-coding
218911	chr8	60771471	60771630	+	0	NA	intron (NM_001316690, intron 1 of 4)	MLT1E1A|LTR|ERVL-MaLR	30291	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
104550	chr17	81306501	81306780	+	0	NA	intron (NR_038080, intron 2 of 3)	intron (NR_038080, intron 2 of 3)	2608	NR_038080	284185		NM_178519		LINC00482	C17orf55	long intergenic non-protein coding RNA 482	ncRNA
214051	chr7	143378221	143378730	+	0	NA	TTS (NR_161353)	TTS (NR_161353)	2550	NR_161353	100507507		NR_161353		FAM131B-AS2	-	FAM131B antisense RNA 2	ncRNA
188843	chr5	159180071	159180580	+	0	NA	intron (NM_001199383, intron 4 of 10)	LTR78|LTR|ERV1	27323	NM_001199382	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
170533	chr3	186618171	186618330	+	0	NA	intron (NM_001622, intron 4 of 6)	intron (NM_001622, intron 4 of 6)	5190	NM_001622	197		NM_001622	ENSG00000145192	AHSG	A2HS|AHS|APMR1|FETUA|HSGA	alpha 2-HS glycoprotein	protein-coding
109845	chr19	1209301	1209500	+	0	NA	intron (NM_000455, intron 1 of 9)	AluSx|SINE|Alu	3622	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
44643	chr11	110297451	110297550	+	0	NA	promoter-TSS (NM_001260495)	promoter-TSS (NM_001260495)	-788	NM_001260493	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
228713	chr9	109098871	109099300	+	0	NA	intron (NM_032012, intron 3 of 17)	intron (NM_032012, intron 3 of 17)	20862	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
6514	chr1	28528821	28529630	+	0	NA	intron (NM_001048195, intron 1 of 10)	AluSx1|SINE|Alu	10999	NM_001048194	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
78815	chr15	99602651	99602750	+	0	NA	intron (NM_001352615, intron 3 of 12)	(TG)n|Simple_repeat|Simple_repeat	-30278	NM_001130928	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
109370	chr19	641351	642750	+	0	NA	intron (NM_001300812, intron 1 of 2)	intron (NM_001300812, intron 1 of 2)	2155	NM_001300812	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
97268	chr17	43016151	43016650	+	0	NA	exon (NM_006373, exon 5 of 6)	exon (NM_006373, exon 5 of 6)	5985	NM_006373	10493		NM_006373	ENSG00000108828	VAT1	VATI	vesicle amine transport 1	protein-coding
24170	chr1	235875121	235875580	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	8358	NM_001301365	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
158141	chr22	50180721	50181450	+	0	NA	TTS (NR_027691)	TTS (NR_027691)	-4828	NR_135275	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
14258	chr1	143256451	143256900	+	0	NA	Intergenic	Intergenic	165917	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
171636	chr3	197557551	197557850	+	0	NA	intron (NM_203315, intron 1 of 6)	AluSz|SINE|Alu	-1732	NM_004051	622		NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding
124207	chr19	56594971	56595950	+	0	NA	intron (NM_021216, intron 1 of 2)	CpG	158	NM_001370215	58491		NM_021216	ENSG00000197951	ZNF71	EZFIT	zinc finger protein 71	protein-coding
194100	chr6	31943801	31944200	+	0	NA	intron (NM_000063, intron 14 of 17).6	intron (NM_000063, intron 14 of 17).6	-2095	NM_001710	629		NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
73134	chr15	41331951	41334550	+	0	NA	promoter-TSS (NM_007280)	promoter-TSS (NM_007280)	369	NM_018454	51203		NM_016359	ENSG00000137804	NUSAP1	ANKT|BM037|LNP|NUSAP|PRO0310p1|Q0310|SAPL	nucleolar and spindle associated protein 1	protein-coding
160267	chr3	25663101	25664300	+	0	NA	intron (NM_001330700, intron 1 of 35)	intron (NM_001330700, intron 1 of 35)	672	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
7904	chr1	37449901	37450300	+	0	NA	Intergenic	Intergenic	24343	NR_038842	728431		NR_038842	ENSG00000233621	LITATS1	LINC01137|ZC3H12A-DT	lncRNA induced by TGF-beta and antagonizes TGF-beta signaling 1	ncRNA
201662	chr6	149496671	149497730	+	0	NA	Intergenic	AluSx4|SINE|Alu	-12186	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
115273	chr19	14553971	14554130	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	18016	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
237756	chrX	129726371	129726630	+	0	NA	Intergenic	Intergenic	-12479	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
221783	chr8	127949521	127949930	+	0	NA	intron (NR_003367, intron 3 of 8)	intron (NR_003367, intron 3 of 8)	-1002	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
148140	chr20	63488071	63488800	+	0	NA	intron (NM_001958, intron 7 of 7)	CpG	10648	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
85415	chr16	50318801	50319600	+	0	NA	3' UTR (NM_001173984, exon 17 of 17)	3' UTR (NM_001173984, exon 17 of 17)	26584	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
223155	chr8	143529351	143530050	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	11747	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
136640	chr2	179263851	179265050	+	0	NA	intron (NM_178123, intron 1 of 17)	CpG	382	NM_178123	91404		NM_178123	ENSG00000187231	SESTD1	SOLO	SEC14 and spectrin domain containing 1	protein-coding
122503	chr19	49584001	49584400	+	0	NA	intron (NM_000951, intron 4 of 6)	AluY|SINE|Alu	2884	NM_001316335	5639		NM_000951	ENSG00000126460	PRRG2	PRGP2	proline rich and Gla domain 2	protein-coding
19655	chr1	180242021	180242280	+	0	NA	intron (NM_033343, intron 1 of 5)	intron (NM_033343, intron 1 of 5)	11886	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
236146	chrX	63560451	63561550	+	0	NA	promoter-TSS (NR_015353)	promoter-TSS (NR_015353)	95	NR_152610	92249		NR_015353	ENSG00000235437	LINC01278	-	long intergenic non-protein coding RNA 1278	ncRNA
182726	chr5	68259171	68259730	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-29069	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
86580	chr16	67235771	67237280	+	0	NA	intron (NM_001318202, intron 11 of 23)	intron (NM_001318202, intron 11 of 23)	9395	NM_014187	29100		NM_014187	ENSG00000168701	TMEM208	HSPC171|SND2|hSND2	transmembrane protein 208	protein-coding
135221	chr2	159209801	159210230	+	0	NA	intron (NM_001350064, intron 19 of 26)	intron (NM_001350064, intron 19 of 26)	23180	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
30287	chr10	75217151	75217530	+	0	NA	intron (NM_003375, intron 5 of 10)	MIRc|SINE|MIR	7186	NM_001184783	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
40219	chr11	63538921	63539180	+	0	NA	intron (NM_004585, intron 1 of 3)	intron (NM_004585, intron 1 of 3)	2242	NM_004585	5920		NM_004585	ENSG00000133321	PLAAT4	HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3	phospholipase A and acyltransferase 4	protein-coding
171114	chr3	195524071	195525200	+	0	NA	intron (NM_001291505, intron 2 of 4)	intron (NM_001291505, intron 2 of 4)	18690	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
109527	chr19	853701	853900	+	0	NA	intron (NM_001972, intron 3 of 4)	intron (NM_001972, intron 3 of 4)	1497	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
110420	chr19	1963801	1964530	+	0	NA	intron (NM_001319, intron 1 of 11)	AluJr|SINE|Alu	-9616	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
152526	chr22	20968271	20968430	+	0	NA	intron (NM_144704, intron 2 of 20)	MIRb|SINE|MIR	1095	NM_001146288	150209		NM_144704	ENSG00000183773	AIFM3	AIFL	apoptosis inducing factor mitochondria associated 3	protein-coding
178184	chr4	142392321	142392780	+	0	NA	intron (NR_169599, intron 3 of 22)	MER57-int|LTR|ERV1	10583	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
226288	chr9	68323051	68323750	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	20533	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
154346	chr22	32474291	32475650	+	0	NA	promoter-TSS (NM_001033024)	promoter-TSS (NM_001033024)	159	NM_012179	25793		NM_012179	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
163355	chr3	50444801	50445000	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	58734	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
37636	chr11	20599851	20599950	+	0	NA	intron (NM_004211, intron 1 of 15)	intron (NM_004211, intron 1 of 15)	292	NM_001318369	9152		NM_004211	ENSG00000165970	SLC6A5	GLYT-2|GLYT2|HKPX3|NET1	solute carrier family 6 member 5	protein-coding
57661	chr12	122730251	122730750	+	0	NA	5' UTR (NM_032554, exon 1 of 1)	5' UTR (NM_032554, exon 1 of 1)	344	NM_032554	27198		NM_032554	ENSG00000196917	HCAR1	FKSG80|GPR104|GPR81|HCA1|LACR1|TA-GPCR|TAGPCR	hydroxycarboxylic acid receptor 1	protein-coding
205041	chr7	6536071	6537030	+	0	NA	intron (NM_001145118, intron 2 of 21)	CpG	14886	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
115540	chr19	15466601	15468380	+	0	NA	Intergenic	L2c|LINE|L2	-2946	NM_001348027	64926		NM_022904	ENSG00000105122	RASAL3	-	RAS protein activator like 3	protein-coding
2577	chr1	9802321	9802950	+	0	NA	intron (NM_014944, intron 1 of 17)	intron (NM_014944, intron 1 of 17)	21330	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
142849	chr20	17611401	17611780	+	0	NA	Intergenic	Intergenic	41515	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
13686	chr1	116665951	116666250	+	0	NA	intron (NM_001007237, intron 2 of 10)	intron (NM_001007237, intron 2 of 10)	1633	NM_001007237	3321		NM_001542	ENSG00000143061	IGSF3	EWI-3|LCDD|V8	immunoglobulin superfamily member 3	protein-coding
71264	chr14	105210201	105211250	+	0	NA	intron (NM_145685, intron 13 of 13)	intron (NM_145685, intron 13 of 13)	-29402	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
128630	chr2	61365121	61366180	+	0	NA	intron (NM_014709, intron 10 of 79)	HAL1b|LINE|L1	51727	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
103060	chr17	77215601	77216350	+	0	NA	3' UTR (NM_001143998, exon 17 of 17)	3' UTR (NM_001143998, exon 17 of 17)	30762	NM_001144001	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
213561	chr7	139127271	139127930	+	0	NA	Intergenic	ERV24B_Prim-int|LTR|ERV1	-6144	NM_001321742	79989		NM_024926	ENSG00000105948	IFT56	BRENS|DYF13|TTC26|dyf-13	intraflagellar transport 56	protein-coding
64740	chr14	34545551	34545650	+	0	NA	Intergenic	(AAG)n|Simple_repeat|Simple_repeat	-1114	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
136968	chr2	190417351	190417850	+	0	NA	intron (NM_017694, intron 2 of 7)	intron (NM_017694, intron 2 of 7)	8742	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
113252	chr19	8502301	8503030	+	0	NA	promoter-TSS (NM_032152)	promoter-TSS (NM_032152)	-25	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
140527	chr2	233236501	233236900	+	0	NA	Intergenic	AluSz|SINE|Alu	-14871	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
228136	chr9	96775921	96776180	+	0	NA	exon (NM_001314059, exon 2 of 6)	exon (NM_001314059, exon 2 of 6)	2037	NM_001314059	22869		NM_014930	ENSG00000081386	ZNF510	-	zinc finger protein 510	protein-coding
183434	chr5	78648221	78649130	+	0	NA	promoter-TSS (NM_005779)	promoter-TSS (NM_005779)	97	NM_005779	10184		NM_005779	ENSG00000145685	LHFPL2	-	LHFPL tetraspan subfamily member 2	protein-coding
56638	chr12	118371101	118372000	+	0	NA	intron (NM_001346487, intron 1 of 20)	CpG	1357	NM_001346492	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
89439	chr16	88967201	88967400	+	0	NA	intron (NM_005187, intron 1 of 11)	CpG	9907	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
114732	chr19	13195651	13196030	+	0	NA	Intergenic	Intergenic	45429	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
150658	chr21	43423301	43423530	+	0	NA	intron (NM_173354, intron 3 of 13)	intron (NM_173354, intron 3 of 13)	3716	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
145447	chr20	43512901	43515230	+	0	NA	promoter-TSS (NM_001377310)	promoter-TSS (NM_001377310)	-376	NR_165195	26013		NM_015478	ENSG00000185513	L3MBTL1	H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3	L3MBTL histone methyl-lysine binding protein 1	protein-coding
186256	chr5	134512051	134512550	+	0	NA	Intergenic	Intergenic	5748	NR_105045	101927934		NR_105045	ENSG00000251169	LINC01843	Lnc-APUE	long intergenic non-protein coding RNA 1843	ncRNA
173458	chr4	8419351	8419850	+	0	NA	intron (NM_001375784, intron 1 of 17)	L1M4|LINE|L1	8848	NM_001375787	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
172161	chr4	1218551	1219050	+	0	NA	TTS (NR_104331)	TTS (NR_104331)	8680	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
65322	chr14	50111601	50112000	+	0	NA	intron (NM_001040662, intron 4 of 4)	AluJb|SINE|Alu	4772	NM_001040662	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
150908	chr21	44196271	44196900	+	0	NA	Intergenic	Intergenic	-36723	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
164131	chr3	56721001	56721830	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-38150	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
15080	chr1	148484121	148484380	+	0	NA	promoter-TSS (NM_001123068)	promoter-TSS (NM_001123068)	-948	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
26277	chr10	14844221	14844480	+	0	NA	3' UTR (NM_001378785, exon 5 of 5)	3' UTR (NM_001378785, exon 5 of 5)	6044	NM_001378785	100421372		NM_001378785	ENSG00000284024	MSANTD7	-	Myb/SANT DNA binding domain containing 7	protein-coding
106177	chr18	10499271	10499450	+	0	NA	Intergenic	Intergenic	-26667	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
236179	chrX	65598271	65599350	+	0	NA	Intergenic	Intergenic	-46389	NR_033742	83957		NM_032033	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
154073	chr22	30742851	30742950	+	0	NA	intron (NM_030758, intron 2 of 13)	L1ME4b|LINE|L1	11343	NR_036171	100422912		NR_036171	ENSG00000264661	MIR3200	mir-3200	microRNA 3200	ncRNA
155475	chr22	38493151	38493700	+	0	NA	intron (NM_006386, intron 10 of 12)	AluJb|SINE|Alu	12886	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
103119	chr17	77377501	77377700	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	1517	NM_001113494	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
92478	chr17	8753821	8754080	+	0	NA	intron (NM_001128076, intron 4 of 6)	intron (NM_001128076, intron 4 of 6)	4596	NM_001128076	388333		NM_001128076	ENSG00000183318	SPDYE4	-	speedy/RINGO cell cycle regulator family member E4	protein-coding
233117	chr9	137135651	137136250	+	0	NA	Intergenic	Intergenic	-3204	NM_007327	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
161806	chr3	45390401	45390600	+	0	NA	intron (NM_001368263, intron 1 of 20)	AluY|SINE|Alu	1924	NM_015340	23395		NM_015340	ENSG00000011376	LARS2	HLASA|LEURS|PRLTS4|mtLeuRS	leucyl-tRNA synthetase 2, mitochondrial	protein-coding
210353	chr7	99562801	99563350	+	0	NA	intron (NM_024061, intron 4 of 4)	intron (NM_024061, intron 4 of 4)	4241	NM_001363334	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
43469	chr11	78149771	78149930	+	0	NA	intron (NR_102281, intron 2 of 2)	MIR|SINE|MIR	10057	NR_102280	100289388		NM_203432	ENSG00000246174	KCTD21-AS1	-	KCTD21 antisense RNA 1	ncRNA
94915	chr17	31901171	31902300	+	0	NA	promoter-TSS (NM_018428)	promoter-TSS (NM_018428)	-27	NM_018428	55813		NM_018428	ENSG00000108651	UTP6	C17orf40|HCA66	UTP6 small subunit processome component	protein-coding
222335	chr8	133528151	133528550	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	43537	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
51457	chr12	52053601	52054000	+	0	NA	intron (NM_002135, intron 2 of 7)	intron (NM_002135, intron 2 of 7)	2358	NM_173157	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
160139	chr3	20060601	20061300	+	0	NA	intron (NM_003884, intron 1 of 17)	(AAC)n|Simple_repeat|Simple_repeat	20504	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
212055	chr7	114974621	114974880	+	0	NA	intron (NM_199072, intron 3 of 4)	intron (NM_199072, intron 3 of 4)	52596	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
220033	chr8	91065971	91066400	+	0	NA	intron (NR_110438, intron 2 of 2)	L1M5|LINE|L1	4004	NR_110438	100506365		NR_110438	ENSG00000253738	OTUD6B-AS1	GS1-251I9.4	OTUD6B antisense RNA 1 (head to head)	ncRNA
98002	chr17	45307151	45308750	+	0	NA	intron (NM_003954, intron 1 of 15)	intron (NM_003954, intron 1 of 15)	9070	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
74303	chr15	58185471	58185630	+	0	NA	3' UTR (NM_001320636, exon 6 of 6)	3' UTR (NM_001320636, exon 6 of 6)	47169	NM_001320635	366		NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
33174	chr10	113005301	113005830	+	0	NA	intron (NM_001363501, intron 4 of 13)	intron (NM_001363501, intron 4 of 13)	-39790	NR_132769	106635520		NR_132769		SNORA87	-	small nucleolar RNA, H/ACA box 87	snoRNA
2525	chr1	9712901	9713350	+	0	NA	intron (NM_001350234, intron 3 of 23)	AluSq2|SINE|Alu	21658	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
117378	chr19	19582451	19582750	+	0	NA	intron (NM_025245, intron 2 of 7)	LTR1A1|LTR|ERV1	36087	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
216448	chr8	19510821	19511880	+	0	NA	intron (NM_001354497, intron 1 of 7)	intron (NM_001354497, intron 1 of 7)	91195	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
55310	chr12	103877871	103878380	+	0	NA	intron (NR_027249, intron 9 of 15)	intron (NR_027249, intron 9 of 15)	-36891	NM_001031701	51559		NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
57879	chr12	123418721	123419380	+	0	NA	intron (NM_145058, intron 3 of 3)	AluY|SINE|Alu	17683	NR_130703	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
26757	chr10	22710121	22710750	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	3673	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
4876	chr1	23779851	23780230	+	0	NA	intron (NM_020362, intron 3 of 5)	intron (NM_020362, intron 3 of 5)	1622	NM_020362	57095		NM_020362	ENSG00000057757	PITHD1	C1orf128|HT014|TXNL1CL	PITH domain containing 1	protein-coding
146933	chr20	51783951	51784250	+	0	NA	3' UTR (NM_020436, exon 4 of 4)	3' UTR (NM_020436, exon 4 of 4)	-15710	NM_006045	10079		NM_006045	ENSG00000054793	ATP9A	ATPIIA|NEDGBA	ATPase phospholipid transporting 9A (putative)	protein-coding
99050	chr17	48907621	48909750	+	0	NA	exon (NM_023079, exon 1 of 7)	exon (NM_023079, exon 1 of 7)	278	NM_023079	65264		NM_023079	ENSG00000159202	UBE2Z	HOYS7|USE1	ubiquitin conjugating enzyme E2 Z	protein-coding
163967	chr3	53031051	53031750	+	0	NA	intron (NM_016329, intron 1 of 20)	Plat_L3|LINE|CR1	14673	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
87563	chr16	72011701	72012180	+	0	NA	intron (NM_001361, intron 1 of 8)	intron (NM_001361, intron 1 of 8)	3196	NM_001361	1723		NM_001361	ENSG00000102967	DHODH	DHOdehase|POADS|URA1	dihydroorotate dehydrogenase (quinone)	protein-coding
19722	chr1	181102721	181103380	+	0	NA	Intergenic	Intergenic	14350	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
189759	chr5	176628471	176629050	+	0	NA	TTS (NR_036239)	TTS (NR_036239)	740	NR_036239	100422962		NR_036239	ENSG00000266329	MIR4281	-	microRNA 4281	ncRNA
12427	chr1	101567621	101568000	+	0	NA	Intergenic	Intergenic	243973	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
76901	chr15	77994951	77995280	+	0	NA	promoter-TSS (NR_026998)	promoter-TSS (NR_026998)	-890	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
90015	chr16	89889951	89890550	+	0	NA	intron (NM_014972, intron 5 of 17)	intron (NM_014972, intron 5 of 17)	16658	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
157726	chr22	46563401	46564000	+	0	NA	Intergenic	Intergenic	-13388	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
68314	chr14	77375751	77375850	+	0	NA	intron (NM_001346131, intron 1 of 5)	intron (NM_001346131, intron 1 of 5)	1294	NM_001346133	283578		NM_213601	ENSG00000100580	TMED8	FAM15B	transmembrane p24 trafficking protein family member 8	protein-coding
224468	chr9	15551971	15553730	+	0	NA	promoter-TSS (NM_001348002)	promoter-TSS (NM_001348002)	-193	NM_001348002	203238		NM_173550	ENSG00000164989	CCDC171	C9orf93|bA536D16.1|bA778P13.1	coiled-coil domain containing 171	protein-coding
25023	chr10	3655571	3655730	+	0	NA	intron (NR_131187, intron 1 of 1)	L2a|LINE|L2	129559	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
155562	chr22	38727871	38728630	+	0	NA	intron (NM_004286, intron 10 of 11)	intron (NM_004286, intron 10 of 11)	22306	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
76372	chr15	74602171	74602330	+	0	NA	Intergenic	Intergenic	-6122	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
28006	chr10	43161671	43161830	+	0	NA	intron (NM_001319656, intron 3 of 4)	intron (NM_001319656, intron 3 of 4)	6853	NM_001319656	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
52903	chr12	57220521	57221800	+	0	NA	intron (NM_007224, intron 1 of 1)	intron (NM_007224, intron 1 of 1)	4366	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
62155	chr13	97210301	97211180	+	0	NA	intron (NM_001382656, intron 1 of 6)	AluSz6|SINE|Alu	-11593	NM_001382684	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
174504	chr4	39964951	39965250	+	0	NA	intron (NM_001100399, intron 2 of 32)	MLT1H1|LTR|ERVL-MaLR	12811	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
199218	chr6	111805501	111806700	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-46183	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
39859	chr11	62399151	62400080	+	0	NA	Intergenic	Intergenic	-19418	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
51935	chr12	53733651	53734230	+	0	NA	Intergenic	Intergenic	-6488	NM_001143682	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
147428	chr20	58899601	58900480	+	0	NA	non-coding (NR_132273, exon 4 of 4)	non-coding (NR_132273, exon 4 of 4)	7877	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
110952	chr19	2897051	2897730	+	0	NA	Intergenic	AluSx|SINE|Alu	-3538	NM_173480	126295		NM_173480	ENSG00000171970	ZNF57	ZNF424	zinc finger protein 57	protein-coding
224496	chr9	17290351	17290600	+	0	NA	intron (NM_017738, intron 6 of 25)	L1PA2|LINE|L1	155435	NM_017738	54875		NM_017738	ENSG00000044459	CNTLN	C9orf101|C9orf39|bA340N12.1	centlein	protein-coding
10041	chr1	58515871	58516230	+	0	NA	intron (NM_145243, intron 7 of 8)	intron (NM_145243, intron 7 of 8)	30676	NM_001379461	1600		NM_021080	ENSG00000173406	DAB1	SCA37	DAB adaptor protein 1	protein-coding
14778	chr1	146050921	146051180	+	0	NA	Intergenic	MER30|DNA|hAT-Charlie	1194	NR_104085	101954276		NR_104085	ENSG00000201558	RNVU1-6	RNU1-99|vU1.6	RNA, variant U1 small nuclear 6	snRNA
168760	chr3	151209571	151210200	+	0	NA	intron (NM_053002, intron 14 of 42)	intron (NM_053002, intron 14 of 42)	-6669	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
85632	chr16	54937421	54938130	+	0	NA	Intergenic	CpG	6576	NM_001252197	10265		NM_005853	ENSG00000176842	IRX5	HMMS|IRX-2a|IRXB2	iroquois homeobox 5	protein-coding
198580	chr6	107489611	107491600	+	0	NA	5' UTR (NM_018013, exon 1 of 7)	5' UTR (NM_018013, exon 1 of 7)	488	NM_018013	55084		NM_018013	ENSG00000112320	SOBP	JXC1|MRAMS	sine oculis binding protein homolog	protein-coding
16343	chr1	154274101	154274700	+	0	NA	intron (NM_006118, intron 3 of 6)	AluSx1|SINE|Alu	1771	NM_006118	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
7438	chr1	32982221	32982480	+	0	NA	Intergenic	AluSg|SINE|Alu	-17541	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
79192	chr16	326921	328080	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	25223	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
202443	chr6	158008951	158010380	+	0	NA	intron (NM_003898, intron 1 of 26)	intron (NM_003898, intron 1 of 26)	-7428	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
197006	chr6	53314101	53314580	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	23277	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
176927	chr4	102821401	102822100	+	0	NA	intron (NM_181893, intron 1 of 6)	L1MA3|LINE|L1	4110	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
3589	chr1	16222271	16222630	+	0	NA	Intergenic	AluSz|SINE|Alu	-9798	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
187526	chr5	142548771	142549000	+	0	NA	Intergenic	Intergenic	72449	NM_001257212	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
54244	chr12	82650651	82650830	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	-36166	NM_152588	160335		NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane O-mannosyltransferase targeting cadherins 2	protein-coding
110602	chr19	2179571	2179930	+	0	NA	intron (NM_032482, intron 1 of 27)	AluSx|SINE|Alu	15817	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
95685	chr17	38420201	38420400	+	0	NA	Intergenic	Intergenic	-8164	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
127703	chr2	43223751	43225700	+	0	NA	exon (NM_006887, exon 2 of 2)	exon (NM_006887, exon 2 of 2)	1881	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
159559	chr3	14879151	14879900	+	0	NA	intron (NM_152536, intron 2 of 19)	intron (NM_152536, intron 2 of 19)	60563	NM_001320276	152273		NM_152536	ENSG00000154783	FGD5	ZFYVE23	FYVE, RhoGEF and PH domain containing 5	protein-coding
232556	chr9	136354501	136355480	+	0	NA	5' UTR (NM_001200003, exon 1 of 4)	5' UTR (NM_001200003, exon 1 of 4)	208	NM_001200003	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
198669	chr6	107853221	107853480	+	0	NA	Intergenic	L1MB3|LINE|L1	-29037	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
19214	chr1	172480551	172480650	+	0	NA	Intergenic	Intergenic	27707	NM_001300760	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
153208	chr22	23892971	23893130	+	0	NA	TTS (NR_038911).2	TTS (NR_038911).2	-1333	NM_002415	4282		NM_002415	ENSG00000240972	MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor	protein-coding
226794	chr9	76704551	76705030	+	0	NA	exon (NM_015225, exon 8 of 19)	exon (NM_015225, exon 8 of 19)	-12375	NM_001308051	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
135843	chr2	170773551	170773850	+	0	NA	intron (NR_110644, intron 1 of 4)	L2b|LINE|L2	-2934	NR_110185	101926913		NR_110185	ENSG00000234350	ERICH2-DT	-	ERICH2 divergent transcript	ncRNA
177863	chr4	128287201	128289950	+	0	NA	promoter-TSS (NM_006320)	promoter-TSS (NM_006320)	-762	NM_006320	10424		NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
168491	chr3	143349501	143349700	+	0	NA	intron (NM_173653, intron 14 of 15)	MIRb|SINE|MIR	7354	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
65092	chr14	39641271	39641630	+	0	NA	Intergenic	Intergenic	-208950	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
142876	chr20	17685021	17685280	+	0	NA	Intergenic	AluJr|SINE|Alu	-2908	NM_001042576	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
191510	chr6	11299101	11299450	+	0	NA	intron (NM_001142393, intron 2 of 7)	L1PA6|LINE|L1	-66593	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
185762	chr5	132271221	132271880	+	0	NA	intron (NM_001131027, intron 5 of 5)	CpG	13854	NM_003687	8572		NM_003687	ENSG00000131435	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
73515	chr15	43779001	43779550	+	0	NA	intron (NM_001199877, intron 1 of 4)	L2|LINE|L2	2189	NM_001199877	10169		NM_005770	ENSG00000140264	SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
94727	chr17	30730551	30732500	+	0	NA	intron (NR_144394, intron 1 of 8)	CpG	21917	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
29299	chr10	69317571	69320300	+	0	NA	promoter-TSS (NM_001322367)	promoter-TSS (NM_001322367)	88	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
48420	chr12	9676151	9676350	+	0	NA	intron (NM_001197317, intron 1 of 3)	L1MC1|LINE|L1	6537	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
220339	chr8	98974501	98974800	+	0	NA	Intergenic	CpG	30208	NM_001142462	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
72680	chr15	38549121	38549380	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	15564	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
11976	chr1	94417151	94417250	+	0	NA	Intergenic	Intergenic	-1177	NM_001122674	5825		NM_002858	ENSG00000117528	ABCD3	ABC43|CBAS5|PMP70|PXMP1|ZWS2	ATP binding cassette subfamily D member 3	protein-coding
166642	chr3	119702601	119703730	+	0	NA	exon (NM_033364, exon 1 of 18)	exon (NM_033364, exon 1 of 18)	143	NM_001320316	89876		NM_033364	ENSG00000183833	CFAP91	AAT1|AAT1alpha|C3orf15|CaM-IP2|MAATS1|SPATA26|SPGF51	cilia and flagella associated protein 91	protein-coding
14941	chr1	147640601	147641300	+	0	NA	Intergenic	Intergenic	29574	NR_136634	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
117901	chr19	32745421	32747680	+	0	NA	intron (NM_001366102, intron 4 of 32)	intron (NM_001366102, intron 4 of 32)	26783	NM_001366102	91646		NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
168517	chr3	143885801	143886100	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-37482	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
77676	chr15	85607151	85607780	+	0	NA	intron (NM_007200, intron 8 of 36)	MIR|SINE|MIR	-12485	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
127954	chr2	46562351	46562850	+	0	NA	intron (NM_012249, intron 2 of 4)	intron (NM_012249, intron 2 of 4)	17638	NR_104182	100506142		NR_104182	ENSG00000250116	RHOQ-AS1	-	RHOQ antisense RNA 1	ncRNA
143088	chr20	22684051	22684150	+	0	NA	intron (NR_146528, intron 2 of 2)	intron (NR_146528, intron 2 of 2)	1244	NR_146528	105372566		NR_146527		LINC01747	-	long intergenic non-protein coding RNA 1747	ncRNA
210059	chr7	95509351	95509450	+	0	NA	intron (NM_145872, intron 2 of 2)	MamSINE1|SINE|tRNA-RTE	23457	NM_016116	51666		NM_016116	ENSG00000005981	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
162135	chr3	46948001	46950480	+	0	NA	intron (NM_144716, intron 2 of 7)	L2c|LINE|L2	27261	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
60236	chr13	40564501	40565400	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	-83944	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
59911	chr13	30843101	30843500	+	0	NA	Intergenic	Intergenic	-39262	NR_103813	440132		NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA
174165	chr4	36277571	36277930	+	0	NA	Intergenic	HAL1|LINE|L1	-3866	NM_001136536	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
208986	chr7	74215021	74215280	+	0	NA	intron (NM_032464, intron 2 of 13)	intron (NM_032464, intron 2 of 13)	5144	NM_014146	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
154379	chr22	34682851	34682950	+	0	NA	Intergenic	L1PA2|LINE|L1	315016	NR_138042	101926957		NR_138042		LINC02885	ISX-AS1	long intergenic non-protein coding RNA 2885	ncRNA
150877	chr21	44127071	44127430	+	0	NA	intron (NM_005049, intron 17 of 20).2	intron (NM_005049, intron 17 of 20).2	-6433	NR_135220	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
191767	chr6	14114671	14115080	+	0	NA	Intergenic	AluJb|SINE|Alu	-2381	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
5298	chr1	25198271	25199350	+	0	NA	Intergenic	Intergenic	33692	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
226693	chr9	75103071	75103430	+	0	NA	intron (NM_012383, intron 1 of 9)	AluJr4|SINE|Alu	14736	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
127604	chr2	42962621	42963280	+	0	NA	Intergenic	Intergenic	76593	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
117651	chr19	23817571	23817750	+	0	NA	intron (NR_149350, intron 3 of 3)	LTR4|LTR|ERV1	54656	NR_149351	388524		NM_001005472	ENSG00000288920	RPSA2	37LRP|67LR|LBP/p40|LRP/LR|LamR|RPSAP58|RPSA_30_1642	ribosomal protein SA 2	protein-coding
201916	chr6	151386151	151386630	+	0	NA	intron (NM_020861, intron 1 of 2)	AluJb|SINE|Alu	5169	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
188221	chr5	150758171	150759630	+	0	NA	promoter-TSS (NM_001135644)	promoter-TSS (NM_001135644)	117	NM_016221	51164		NM_016221	ENSG00000132912	DCTN4	DYN4|P62	dynactin subunit 4	protein-coding
193445	chr6	30488351	30488450	+	0	NA	Intergenic	AluSg|SINE|Alu	-1109	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
224837	chr9	27379451	27379630	+	0	NA	intron (NM_024761, intron 2 of 3)	MIR|SINE|MIR	-82390	NM_020641	54586		NM_020641	ENSG00000120160	EQTN	AFAF|C9orf11|SPACA8	equatorin	protein-coding
2827	chr1	11053871	11054380	+	0	NA	TTS (NM_003132)	TTS (NM_003132)	5893	NM_003132	6723		NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
67687	chr14	73231821	73232200	+	0	NA	Intergenic	Intergenic	-5496	NR_158678	89932		NM_173462	ENSG00000100767	PAPLN	PPN	papilin, proteoglycan like sulfated glycoprotein	protein-coding
230628	chr9	128639771	128640130	+	0	NA	intron (NM_052844, intron 2 of 8)	AluSx|SINE|Alu	16900	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
189931	chr5	177387801	177388000	+	0	NA	intron (NM_003052, intron 6 of 12)	intron (NM_003052, intron 6 of 12)	3466	NM_003052	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
161587	chr3	43015521	43017400	+	0	NA	intron (NM_001129908, intron 1 of 4)	intron (NM_001129908, intron 1 of 4)	37149	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
6859	chr1	31065071	31066300	+	0	NA	promoter-TSS (NM_001020658)	promoter-TSS (NM_001020658)	32	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
106411	chr18	13483471	13483830	+	0	NA	intron (NM_001378099, intron 4 of 6)	MIRb|SINE|MIR	23703	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
157299	chr22	44351801	44352080	+	0	NA	Intergenic	Intergenic	-38989	NM_001099294	85352		NM_001099294	ENSG00000138944	SHISAL1	KIAA1644	shisa like 1	protein-coding
117219	chr19	19411871	19413050	+	0	NA	intron (NM_001384527, intron 1 of 11)	AluJb|SINE|Alu	6785	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
143972	chr20	32845921	32846630	+	0	NA	intron (NM_012325, intron 5 of 6)	intron (NM_012325, intron 5 of 6)	-12648	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
114266	chr19	11573301	11573700	+	0	NA	Intergenic	AluSz|SINE|Alu	4145	NM_001611	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
233471	chr9	137722421	137724330	+	0	NA	intron (NM_024757, intron 3 of 26)	intron (NM_024757, intron 3 of 26)	65031	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
213423	chr7	138004071	138004430	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	-2164	NM_001253775	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
56282	chr12	112128451	112129300	+	0	NA	intron (NM_001143906, intron 1 of 11)	AluSx|SINE|Alu	3315	NM_006700	10906		NM_006700	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
88123	chr16	81597801	81598000	+	0	NA	intron (NM_030629, intron 1 of 20)	L2b|LINE|L2	-13448	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
27511	chr10	32296221	32296980	+	0	NA	intron (NR_168511, intron 2 of 13)	L4_B_Mam|LINE|RTE-X	50558	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
85106	chr16	33961601	33961830	+	0	NA	Intergenic	Intergenic	192338	NR_130772	104644205		NR_130771		ENPP7P13	DUNQU1	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13	pseudo
204438	chr7	3300351	3302180	+	0	NA	promoter-TSS (NM_152744)	promoter-TSS (NM_152744)	13	NM_152744	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
39817	chr11	62027871	62028030	+	0	NA	Intergenic	LTR45|LTR|ERV1	-60316	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
173514	chr4	9659651	9660030	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-103524	NR_031688	100302277		NR_031688	ENSG00000221275	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2	microRNA 548i-2	ncRNA
194559	chr6	33375471	33375830	+	0	NA	Intergenic	LTR8|LTR|ERV1	-16173	NM_002263	3833		NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
49889	chr12	39369771	39370130	+	0	NA	intron (NM_001378440, intron 2 of 36)	Penelope1_Vert|LINE|Penelope	73170	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
94439	chr17	29158701	29159100	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	17873	NM_001346767	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
95583	chr17	37088401	37088930	+	0	NA	intron (NM_198836, intron 55 of 55).2	intron (NM_198836, intron 55 of 55).2	54920	NR_036056	100422969		NR_036056	ENSG00000276326	MIR2909	-	microRNA 2909	ncRNA
53628	chr12	68157321	68157780	+	0	NA	intron (NM_000619, intron 3 of 3)	MIR3|SINE|MIR	2190	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
212114	chr7	116215721	116216330	+	0	NA	intron (NM_015641, intron 1 of 6)	intron (NM_015641, intron 1 of 6)	5486	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
16794	chr1	155546401	155547300	+	0	NA	intron (NM_018489, intron 1 of 27)	intron (NM_018489, intron 1 of 27)	-15192	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
69579	chr14	97136351	97136490	+	0	NA	Intergenic	(CAC)n|Simple_repeat|Simple_repeat	-18437	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
40777	chr11	64876901	64877800	+	0	NA	intron (NM_001282444, intron 3 of 6)	intron (NM_001282444, intron 3 of 6)	1259	NR_162101	113218486		NR_162101		MIR10392	-	microRNA 10392	ncRNA
167848	chr3	134211921	134212280	+	0	NA	intron (NM_001005861, intron 2 of 14)	intron (NM_001005861, intron 2 of 14)	38644	NM_001005861	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
50906	chr12	49292301	49292500	+	0	NA	TTS (NR_120449)	TTS (NR_120449)	-2747	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
193363	chr6	30323851	30324230	+	0	NA	intron (NR_024052, intron 1 of 4)	intron (NR_024052, intron 1 of 4)	2094	NR_052012	414778		NR_052012	ENSG00000270604	HCG17	HCG18|LINC00046|NCRNA00046	HLA complex group 17	ncRNA
146214	chr20	48789201	48789600	+	0	NA	intron (NM_020820, intron 1 of 39)	MIR|SINE|MIR	38599	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
118839	chr19	38618601	38620050	+	0	NA	exon (NM_001300992, exon 1 of 7).2	exon (NM_001300992, exon 1 of 7).2	137	NM_013234	27335		NM_013234	ENSG00000178982	EIF3K	ARG134|EIF3-p28|EIF3S12|HSPC029|M9|MSTP001|PLAC-24|PLAC24|PRO1474|PTD001	eukaryotic translation initiation factor 3 subunit K	protein-coding
74863	chr15	63553451	63554130	+	0	NA	exon (NM_006537, exon 4 of 15)	exon (NM_006537, exon 4 of 15)	-43597	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
200063	chr6	130029221	130030080	+	0	NA	intron (NM_001007102, intron 2 of 21)	intron (NM_001007102, intron 2 of 21)	10006	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
73613	chr15	44565221	44566900	+	0	NA	intron (NM_025137, intron 37 of 39)	intron (NM_025137, intron 37 of 39)	28913	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
217083	chr8	23727851	23728150	+	0	NA	Intergenic	Intergenic	-21244	NM_001136271	137814		NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
26719	chr10	22671201	22671730	+	0	NA	intron (NM_005028, intron 1 of 9)	MIRb|SINE|MIR	42643	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
134735	chr2	144587351	144587650	+	0	NA	Intergenic	Intergenic	-63056	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
169456	chr3	167881851	167882230	+	0	NA	Intergenic	Intergenic	-13908	NR_145443	646168		NR_033843	ENSG00000293511	LRRC77P	LINC01330	leucine rich repeat containing 77, pseudogene	pseudo
211161	chr7	102577351	102578330	+	0	NA	Intergenic	Intergenic	-5219	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
197935	chr6	89821321	89821580	+	0	NA	Intergenic	AluSp|SINE|Alu	-1656	NM_014611	23195		NM_014611	ENSG00000112159	MDN1	Rea1	midasin AAA ATPase 1	protein-coding
133255	chr2	113370451	113370850	+	0	NA	Intergenic	Intergenic	-67041	NM_001330340	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
152944	chr22	22849951	22850250	+	0	NA	Intergenic	Intergenic	27324	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
231336	chr9	130173951	130174400	+	0	NA	intron (NM_014286, intron 1 of 7)	intron (NM_014286, intron 1 of 7)	1771	NM_014286	23413		NM_014286	ENSG00000107130	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
225121	chr9	33472071	33472430	+	0	NA	exon (NM_022917, exon 2 of 26)	exon (NM_022917, exon 2 of 26)	1674	NM_022917	65083		NM_022917	ENSG00000165271	NOL6	NRAP|UTP22|bA311H10.1	nucleolar protein 6	protein-coding
202365	chr6	157763901	157765080	+	0	NA	Intergenic	Intergenic	-58756	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
126246	chr2	27078951	27079650	+	0	NA	intron (NM_007046, intron 1 of 7)	intron (NM_007046, intron 1 of 7)	685	NM_007046	11117		NM_007046	ENSG00000138080	EMILIN1	EMI|EMILIN|HMN10|HMND10|gp115	elastin microfibril interfacer 1	protein-coding
120917	chr19	45638771	45639980	+	0	NA	promoter-TSS (NM_001352054)	promoter-TSS (NM_001352054)	22	NM_001352054	24139		NM_012155	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	EMAP like 2	protein-coding
106597	chr18	22223651	22224000	+	0	NA	Intergenic	Intergenic	54236	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
223881	chr9	270601	271180	+	0	NA	intron (NM_203447, intron 1 of 47)	Tigger16b|DNA|TcMar-Tigger	-2156	NM_001190458	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
236599	chrX	73943621	73944750	+	0	NA	promoter-TSS (NR_024582)	promoter-TSS (NR_024582)	-139	NR_024582	554203		NR_024582	ENSG00000225470	JPX	DCBALD06|ENOX|LINC00183|NCRNA00183	JPX transcript, XIST activator	ncRNA
39034	chr11	47765071	47765430	+	0	NA	intron (NM_015308, intron 2 of 16)	intron (NM_015308, intron 2 of 16)	2091	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
3314	chr1	15406621	15407300	+	0	NA	Intergenic	Intergenic	-2928	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
199379	chr6	116271921	116272800	+	0	NA	intron (NM_001322937, intron 2 of 6)	L3|LINE|CR1	7570	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
51419	chr12	52014751	52015300	+	0	NA	exon (NM_181711, exon 8 of 8)	exon (NM_181711, exon 8 of 8)	4533	NM_001271856	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
55411	chr12	104480101	104480300	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	23252	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
54006	chr12	75459351	75459880	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-21140	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
177470	chr4	113740501	113740900	+	0	NA	intron (NM_001321585, intron 2 of 19)	L2c|LINE|L2	21038	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
192702	chr6	26309221	26310150	+	0	NA	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-24151	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
88788	chr16	87335651	87336350	+	0	NA	intron (NM_024735, intron 6 of 8)	intron (NM_024735, intron 6 of 8)	18491	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
104109	chr17	80281101	80281830	+	0	NA	intron (NM_020954, intron 3 of 16)	(AC)n|Simple_repeat|Simple_repeat	20613	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
234107	chrX	9464071	9464230	+	0	NA	promoter-TSS (NM_005647)	promoter-TSS (NM_005647)	855	NM_001139466	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
141485	chr2	241095201	241096300	+	0	NA	TTS (NM_001080437)	TTS (NM_001080437)	6537	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
136188	chr2	174550371	174550730	+	0	NA	Intergenic	Intergenic	7522	NR_004394	26827		NR_004394	ENSG00000206625	RNU6-1	RNU6|RNU6A|U6|U6-1	RNA, U6 small nuclear 1	snRNA
165321	chr3	87997271	87997580	+	0	NA	Intergenic	Intergenic	14849	NM_000866	3355		NM_000866	ENSG00000179097	HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	5-hydroxytryptamine receptor 1F	protein-coding
148688	chr21	6267271	6267430	+	0	NA	promoter-TSS (NM_001322047).2	promoter-TSS (NM_001322047).2	-14	NM_001322036	102724951		NM_001322036	ENSG00000276077	LINC03105	-	long intergenic non-protein coding RNA 3105	ncRNA
128853	chr2	63857221	63857600	+	0	NA	intron (NM_001377524, intron 3 of 10)	AluJb|SINE|Alu	15514	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
129776	chr2	71131901	71132100	+	0	NA	intron (NM_005791, intron 1 of 10)	L2a|LINE|L2	1366	NM_005791	10199		NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P|PPP1R106	M-phase phosphoprotein 10	protein-coding
28244	chr10	45558401	45558600	+	0	NA	intron (NM_145021, intron 1 of 6)	intron (NM_145021, intron 1 of 6)	-23129	NM_001002266	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
72037	chr15	28589101	28589980	+	0	NA	promoter-TSS (NR_145479).3	promoter-TSS (NR_145479).3	-300	NR_145479	100996738		NR_145479		HERC2P11	-	HERC2 pseudogene 11	pseudo
145603	chr20	44616801	44617000	+	0	NA	intron (NM_007066, intron 3 of 3)	intron (NM_007066, intron 3 of 3)	34321	NM_001281445	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
62233	chr13	98525051	98525150	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-2975	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
87690	chr16	74663951	74664450	+	0	NA	intron (NM_001370534, intron 1 of 12)	AluJb|SINE|Alu	2677	NM_018124	55159		NM_018124	ENSG00000168411	RFWD3	FANCW|RNF201	ring finger and WD repeat domain 3	protein-coding
61205	chr13	49449471	49449630	+	0	NA	intron (NM_001320699, intron 1 of 13)	intron (NM_001320699, intron 1 of 13)	5276	NM_001160308	83852		NM_031915	ENSG00000136169	SETDB2	C13orf4|CLLD8|CLLL8|KMT1F	SET domain bifurcated histone lysine methyltransferase 2	protein-coding
180413	chr5	10365301	10365500	+	0	NA	intron (NM_001270661, intron 1 of 22)	AluSp|SINE|Alu	11705	NM_001270661	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
217389	chr8	28164251	28165280	+	0	NA	intron (NM_018091, intron 14 of 14)	intron (NM_018091, intron 14 of 14)	71626	NM_001284224	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
200369	chr6	134173551	134175880	+	0	NA	intron (NM_001143676, intron 3 of 13)	intron (NM_001143676, intron 3 of 13)	151	NM_005627	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
76124	chr15	72523351	72524380	+	0	NA	intron (NM_005744, intron 2 of 13)	intron (NM_005744, intron 2 of 13)	49535	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
130367	chr2	85133071	85134080	+	0	NA	5' UTR (NM_031283, exon 1 of 12)	5' UTR (NM_031283, exon 1 of 12)	183	NM_031283	83439		NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	transcription factor 7 like 1	protein-coding
12739	chr1	109560601	109561300	+	0	NA	intron (NM_006496, intron 1 of 8)	intron (NM_006496, intron 1 of 8)	12335	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
204867	chr7	5836001	5836680	+	0	NA	intron (NR_023382, intron 2 of 6)	intron (NR_023382, intron 2 of 6)	13180	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
156307	chr22	40537171	40537980	+	0	NA	intron (NM_001282661, intron 3 of 13)	SVA_F|Retroposon|SVA	-3748	NM_001318139	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
191048	chr6	3250901	3252230	+	0	NA	Intergenic	Intergenic	-7382	NM_001135750	389362		NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
134869	chr2	148725601	148725830	+	0	NA	intron (NM_015630, intron 2 of 13)	L1MC4|LINE|L1	80964	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
118765	chr19	38378971	38379130	+	0	NA	intron (NM_002812, intron 3 of 6)	intron (NM_002812, intron 3 of 6)	4479	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
215699	chr8	1287971	1288750	+	0	NA	intron (NM_001346810, intron 3 of 14)	intron (NM_001346810, intron 3 of 14)	14247	NR_111948	286083		NR_033895	ENSG00000275427	LOC286083	-	uncharacterized LOC286083	ncRNA
145953	chr20	46117871	46119150	+	0	NA	intron (NR_136327, intron 1 of 7)	intron (NR_136327, intron 1 of 7)	196	NR_126502	958		NM_001250	ENSG00000101017	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule	protein-coding
148415	chr20	63950751	63951230	+	0	NA	5' UTR (NM_001353478, exon 1 of 15)	5' UTR (NM_001353478, exon 1 of 15)	197	NM_001193379	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
87665	chr16	74597221	74597480	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluSc|SINE|Alu	9764	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
152022	chr22	19433871	19434030	+	0	NA	intron (NM_003776, intron 2 of 3)	AluSx1|SINE|Alu	1011	NM_001318152	64976		NM_003776	ENSG00000185608	MRPL40	L40mt|MRP-L22|MRP-L40|MRPL22|NLVCF|URIM|mL40	mitochondrial ribosomal protein L40	protein-coding
9550	chr1	51548951	51549250	+	0	NA	Intergenic	Intergenic	-29834	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
137816	chr2	200375701	200375900	+	0	NA	intron (NM_001282743, intron 2 of 11)	AluJb|SINE|Alu	66850	NM_001282744	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
12568	chr1	108708971	108709480	+	0	NA	Intergenic	MER96|DNA|hAT-Tip100	-3683	NM_001144937	163479		NM_173532	ENSG00000143107	FNDC7	-	fibronectin type III domain containing 7	protein-coding
141618	chr2	241672871	241673530	+	0	NA	3' UTR (NM_178326, exon 13 of 13)	3' UTR (NM_178326, exon 13 of 13)	13615	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
48321	chr12	9023551	9024050	+	0	NA	Intergenic	AluJr4|SINE|Alu	34175	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
199073	chr6	111648601	111648800	+	0	NA	Intergenic	Intergenic	-42426	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
172981	chr4	4135901	4136100	+	0	NA	Intergenic	SATR1|Satellite|Satellite	90929	NM_177998	133060		NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
67030	chr14	67598001	67598200	+	0	NA	intron (NM_004569, intron 1 of 3)	intron (NM_004569, intron 1 of 3)	2168	NM_004569	5283		NM_004569	ENSG00000100564	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis class H	protein-coding
183995	chr5	90473551	90475130	+	0	NA	promoter-TSS (NM_001370353)	promoter-TSS (NM_001370353)	411	NM_001370354	10622		NM_006467	ENSG00000113356	POLR3G	C31|RPC32|RPC7	RNA polymerase III subunit G	protein-coding
50337	chr12	47082851	47083180	+	0	NA	intron (NM_138371, intron 1 of 3)	intron (NM_138371, intron 1 of 3)	-3056	NM_001370299	347902		NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
137531	chr2	197209421	197211250	+	0	NA	intron (NM_153697, intron 1 of 9)	MIRb|SINE|MIR	12344	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
114298	chr19	11766701	11768280	+	0	NA	intron (NM_152355, intron 1 of 3)	LTR26E|LTR|ERV1	490	NM_152355	126068		NM_152355	ENSG00000197044	ZNF441	-	zinc finger protein 441	protein-coding
154218	chr22	31521521	31522030	+	0	NA	intron (NM_001258326, intron 2 of 30)	AluSz6|SINE|Alu	25239	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
93221	chr17	17833001	17833200	+	0	NA	intron (NM_001005291, intron 1 of 19)	intron (NM_001005291, intron 1 of 19)	3886	NM_001005291	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
145704	chr20	45026071	45026630	+	0	NA	intron (NM_006282, intron 10 of 10)	L2a|LINE|L2	59838	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
5427	chr1	25557701	25558630	+	0	NA	intron (NM_015627, intron 4 of 8)	intron (NM_015627, intron 4 of 8)	14559	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
33322	chr10	115065351	115065450	+	0	NA	Intergenic	AluY|SINE|Alu	-27965	NM_001276282	26033		NM_207303	ENSG00000107518	ATRNL1	ALP|bA338L11.1|bA454H24.1	attractin like 1	protein-coding
20267	chr1	194055901	194057080	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	751745	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
139926	chr2	230777021	230777280	+	0	NA	intron (NM_016289, intron 2 of 8)	intron (NM_016289, intron 2 of 8)	63602	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
193069	chr6	28714501	28714900	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-60225	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
221555	chr8	124995601	124996580	+	0	NA	TTS (NR_134457)	TTS (NR_134457)	2108	NR_134457	105375744		NR_134457	ENSG00000253513	SQLE-DT	lnc030	SQLE divergent transcript	ncRNA
178964	chr4	159312371	159312530	+	0	NA	intron (NM_001351728, intron 2 of 24)	intron (NM_001351728, intron 2 of 24)	44641	NM_014247	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
138236	chr2	202911421	202913050	+	0	NA	promoter-TSS (NM_001282912)	promoter-TSS (NM_001282912)	17	NM_001282911	79800		NM_024744	ENSG00000138380	CARF	ALS2CR8|NYD-SP24	calcium responsive transcription factor	protein-coding
174492	chr4	39947121	39947930	+	0	NA	intron (NM_001100399, intron 2 of 32)	MER30|DNA|hAT-Charlie	30386	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
112130	chr19	5605071	5605430	+	0	NA	intron (NM_014649, intron 9 of 20)	AluSx1|SINE|Alu	17526	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
47508	chr12	4107151	4108230	+	0	NA	Intergenic	Intergenic	-166072	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
72814	chr15	40104621	40105630	+	0	NA	intron (NM_001003940, intron 3 of 4)	intron (NM_001003940, intron 3 of 4)	961	NM_001003942	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
212636	chr7	129435801	129436230	+	0	NA	intron (NM_001134336, intron 1 of 19)	intron (NM_001134336, intron 1 of 19)	1583	NM_020704	57464		NM_020704	ENSG00000128578	STRIP2	FAM40B|FAR11B	striatin interacting protein 2	protein-coding
5475	chr1	25658101	25658300	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	-37955	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
186103	chr5	134123751	134123850	+	0	NA	intron (NM_001366502, intron 1 of 7)	intron (NM_001366502, intron 1 of 7)	182	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
229623	chr9	124017071	124017230	+	0	NA	intron (NM_004789, intron 3 of 4)	CpG	5382	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
98963	chr17	48675851	48676150	+	0	NA	Intergenic	L1MB7|LINE|L1	-43441	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
156665	chr22	41645921	41646530	+	0	NA	intron (NM_001288976, intron 6 of 12)	AluSx3|SINE|Alu	24930	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
91795	chr17	7023241	7025300	+	0	NA	exon (NM_181844, exon 3 of 9)	exon (NM_181844, exon 3 of 9)	1220	NM_181844	255877		NM_181844	ENSG00000161940	BCL6B	BAZF|ZBTB28|ZNF62	BCL6B transcription repressor	protein-coding
66597	chr14	63545071	63545230	+	0	NA	TTS (NR_158218)	TTS (NR_158218)	-1755	NM_001354926	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
109272	chr19	539601	540130	+	0	NA	intron (NM_004359, intron 4 of 4)	intron (NM_004359, intron 4 of 4)	-4188	NM_005317	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
89727	chr16	89426221	89426900	+	0	NA	intron (NR_045839, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	-4358	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
199346	chr6	114989351	114990100	+	0	NA	Intergenic	Intergenic	654110	NR_134602	105377962		NR_134602	ENSG00000228777	LINC02534	-	long intergenic non-protein coding RNA 2534	ncRNA
130955	chr2	87517221	87518580	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	47950	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
79074	chr16	167371	167900	+	0	NA	TTS (NM_001003938)	TTS (NM_001003938)	1657	NM_001003938	3042		NM_001003938	ENSG00000206177	HBM	HBAP2|HBK	hemoglobin subunit mu	protein-coding
10884	chr1	78145101	78145450	+	0	NA	Intergenic	Intergenic	-84324	NR_027310	149047		NM_144700	ENSG00000237413	MGC27382	-	uncharacterized MGC27382	ncRNA
108948	chr18	79506251	79506700	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-72807	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
51843	chr12	53463701	53464180	+	0	NA	promoter-TSS (NR_109828)	promoter-TSS (NR_109828)	-528	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
126279	chr2	27197301	27197900	+	0	NA	Intergenic	Intergenic	14668	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
193110	chr6	28940421	28942230	+	0	NA	Intergenic	Intergenic	-2459	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
91760	chr17	6846021	6846280	+	0	NA	Intergenic	L1PA7|LINE|L1	-7426	NR_002710	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
123217	chr19	52783321	52783580	+	0	NA	intron (NM_001321866, intron 1 of 5)	AluY|SINE|Alu	3341	NM_198457	162966		NM_198457	ENSG00000189190	ZNF600	KR-ZNF1	zinc finger protein 600	protein-coding
221632	chr8	125901451	125901900	+	0	NA	Intergenic	L1MB2|LINE|L1	49522	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
182299	chr5	58454371	58454530	+	0	NA	3' UTR (NM_006622, exon 14 of 14)	3' UTR (NM_006622, exon 14 of 14)	5636	NM_006622	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
65174	chr14	49600951	49601250	+	0	NA	intron (NM_203467, intron 1 of 2)	intron (NM_203467, intron 1 of 2)	2160	NM_152329	122769		NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
36045	chr11	2931471	2931630	+	0	NA	Intergenic	Intergenic	-2130	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
130605	chr2	85892471	85892830	+	0	NA	TTS (NR_110569)	TTS (NR_110569)	3370	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
37102	chr11	13281851	13282150	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	4210	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
70362	chr14	101880121	101880380	+	0	NA	intron (NM_178587, intron 2 of 11)	intron (NM_178587, intron 2 of 11)	70387	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
238806	chrX	154399501	154400500	+	0	NA	promoter-TSS (NR_000011)	promoter-TSS (NR_000011)	-281	NR_000011	26778		NR_000011	ENSG00000207165	SNORA70	DXS648E|RNU70|U70	small nucleolar RNA, H/ACA box 70	snoRNA
140272	chr2	232319621	232320550	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-58666	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
85288	chr16	48609431	48610680	+	0	NA	5' UTR (NM_153029, exon 1 of 7)	5' UTR (NM_153029, exon 1 of 7)	125	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
50139	chr12	45721671	45721830	+	0	NA	Intergenic	Intergenic	6171	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
223014	chr8	143287871	143288500	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-3232	NM_030895	79943		NM_030895	ENSG00000185730	ZNF696	-	zinc finger protein 696	protein-coding
146800	chr20	50943151	50943680	+	0	NA	intron (NM_003859, intron 5 of 8)	AluSc|SINE|Alu	-11978	NM_181442	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
181975	chr5	55167571	55167930	+	0	NA	TTS (NR_131340)	TTS (NR_131340)	2872	NR_029960	554213		NR_029960	ENSG00000198983	MIR449A	MIRN449|MIRN449A|hsa-mir-449|mir-449a	microRNA 449a	ncRNA
179997	chr5	944121	945050	+	0	NA	Intergenic	Intergenic	51701	NM_004237	9319		NM_004237	ENSG00000071539	TRIP13	16E1BP|MVA3|OOMD9|OZEMA9	thyroid hormone receptor interactor 13	protein-coding
130861	chr2	87401471	87402150	+	0	NA	Intergenic	AluSx3|SINE|Alu	-53617	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
165827	chr3	105835071	105835230	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	32441	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
208198	chr7	65036651	65036980	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1539	NR_033416	643180		NR_033416	ENSG00000290860	CCT6P3	CCT6-3P	chaperonin containing TCP1 subunit 6 pseudogene 3	pseudo
229724	chr9	124864021	124864480	+	0	NA	intron (NM_030978, intron 2 of 5)	AluSz|SINE|Alu	2120	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
111309	chr19	3609771	3610450	+	0	NA	TTS (NM_001080543)	TTS (NM_001080543)	2863	NR_038865	404665		NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	ncRNA
81931	chr16	11784651	11784750	+	0	NA	intron (NM_014153, intron 1 of 22)	AluSp|SINE|Alu	12558	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
132731	chr2	109217301	109217900	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-76012	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
58170	chr12	124963971	124964600	+	0	NA	intron (NM_032656, intron 15 of 26)	intron (NM_032656, intron 15 of 26)	24846	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
185236	chr5	123089151	123089450	+	0	NA	promoter-TSS (NM_001136239)	promoter-TSS (NM_001136239)	59	NM_001136239	93166		NM_001136239	ENSG00000061455	PRDM6	KMT8C|PDA3|PRISM	PR/SET domain 6	protein-coding
85939	chr16	57141421	57142500	+	0	NA	intron (NM_152727, intron 14 of 15)	intron (NM_152727, intron 14 of 15)	40590	NM_001354098	80011		NM_024946	ENSG00000172775	PSME3IP1	C16orf94|CDA018|CDA10|FAM192A|NIP30|PIP30	proteasome activator subunit 3 interacting protein 1	protein-coding
23417	chr1	228358251	228358950	+	0	NA	intron (NM_052843, intron 80 of 80)	intron (NM_052843, intron 80 of 80)	38509	NR_106800	102465444		NR_106800	ENSG00000284311	MIR6742	hsa-mir-6742	microRNA 6742	ncRNA
2399	chr1	9543751	9544050	+	0	NA	intron (NM_032315, intron 1 of 6)	AluSx|SINE|Alu	4435	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
163187	chr3	50204621	50206480	+	0	NA	intron (NM_006841, intron 1 of 15)	CpG	279	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
155066	chr22	37540171	37540530	+	0	NA	Intergenic	Intergenic	-20130	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
187944	chr5	149211201	149211430	+	0	NA	intron (NM_001370417, intron 6 of 21)	intron (NM_001370417, intron 6 of 21)	-60523	NM_001323063	134265		NM_152406	ENSG00000157510	AFAP1L1	-	actin filament associated protein 1 like 1	protein-coding
204361	chr7	2909201	2909880	+	0	NA	intron (NM_032415, intron 24 of 24)	(CCCT)n|Simple_repeat|Simple_repeat	-65232	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
52062	chr12	54029571	54030400	+	0	NA	3' UTR (NM_004503, exon 2 of 2)	3' UTR (NM_004503, exon 2 of 2)	1545	NM_004503	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
156801	chr22	41919251	41920580	+	0	NA	Intergenic	CpG	3382	NR_039760	100616259		NR_039760	ENSG00000283829	MIR378I	-	microRNA 378i	ncRNA
162429	chr3	48426321	48426780	+	0	NA	intron (NM_001130082, intron 1 of 37)	intron (NM_001130082, intron 1 of 37)	2913	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
82422	chr16	16301651	16302350	+	0	NA	Intergenic	L2a|LINE|L2	1841	NR_036140	100422960		NR_036140	ENSG00000284305	MIR3179-1	-	microRNA 3179-1	ncRNA
111003	chr19	3043971	3044550	+	0	NA	intron (NM_001144761, intron 2 of 19)	intron (NM_001144761, intron 2 of 19)	3375	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
6389	chr1	27904271	27904630	+	0	NA	intron (NM_001286076, intron 4 of 8)	intron (NM_001286076, intron 4 of 8)	10125	NM_002946	6118		NM_002946	ENSG00000117748	RPA2	REPA2|RP-A p32|RP-A p34|RPA32	replication protein A2	protein-coding
232052	chr9	133462101	133462630	+	0	NA	intron (NM_017586, intron 1 of 4)	intron (NM_017586, intron 1 of 4)	2387	NM_017586	11094		NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
55150	chr12	98743401	98743730	+	0	NA	TTS (NM_001352212)	TTS (NM_001352212)	98265	NM_181869	317		NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
114683	chr19	13104151	13105700	+	0	NA	TTS (NM_001351760)	TTS (NM_001351760)	-2067	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
113350	chr19	8662171	8662580	+	0	NA	intron (NM_001378601, intron 1 of 2)	L2a|LINE|L2	6798	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
123030	chr19	51135021	51135280	+	0	NA	intron (NM_001198558, intron 6 of 6)	L1PA13|LINE|L1	-7151	NM_001277201	27036		NM_014385	ENSG00000168995	SIGLEC7	AIRM-1|AIRM1|CD328|CDw328|D-siglec|QA79|SIGLEC-7|SIGLEC19P|SIGLECP2|p75|p75/AIRM1	sialic acid binding Ig like lectin 7	protein-coding
100101	chr17	58322701	58323350	+	0	NA	exon (NM_024418, exon 7 of 31)	exon (NM_024418, exon 7 of 31)	-2425	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
108660	chr18	76792571	76792800	+	0	NA	Intergenic	Intergenic	29610	NR_040024	100131655		NR_040024	ENSG00000264278	ZNF236-DT	-	ZNF236 divergent transcript	ncRNA
33092	chr10	110910051	110910380	+	0	NA	intron (NM_001195304, intron 2 of 4)	L2c|LINE|L2	8721	NM_001195306	92482		NM_001195304	ENSG00000214413	BBIP1	BBIP10|BBS18|NCRNA00081|bA348N5.3	BBSome interacting protein 1	protein-coding
208166	chr7	64667471	64667630	+	0	NA	intron (NM_001282359, intron 1 of 3)	intron (NM_001282359, intron 1 of 3)	1417	NM_001013746	51427		NM_016220	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
187022	chr5	139764151	139764710	+	0	NA	Intergenic	CpG	-18207	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
101519	chr17	67828671	67828830	+	0	NA	intron (NM_182641, intron 1 of 27)	AluSp|SINE|Alu	3247	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
174985	chr4	49650051	49650700	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	663733	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
231517	chr9	131419121	131420280	+	0	NA	intron (NM_013318, intron 1 of 31)	MIRb|SINE|MIR	25614	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
165545	chr3	101381251	101381350	+	0	NA	intron (NM_001282803, intron 3 of 20)	MIRc|SINE|MIR	-60725	NM_016247	50939		NM_016247	ENSG00000081148	IMPG2	IPM200|RP56|SPACRCAN|VMD5	interphotoreceptor matrix proteoglycan 2	protein-coding
197502	chr6	75618621	75619080	+	0	NA	intron (NM_015571, intron 1 of 23)	L1MC3|LINE|L1	16970	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
80950	chr16	3859821	3860250	+	0	NA	intron (NM_004380, intron 1 of 30)	MER21B|LTR|ERVL	20085	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
178132	chr4	142211501	142211700	+	0	NA	intron (NM_001385459, intron 5 of 18)	intron (NM_001385459, intron 5 of 18)	94232	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
155098	chr22	37590571	37590930	+	0	NA	Intergenic	AluY|SINE|Alu	-10663	NM_006498	3957		NM_006498	ENSG00000100079	LGALS2	HL14	galectin 2	protein-coding
115018	chr19	14078651	14079150	+	0	NA	Intergenic	AluSq2|SINE|Alu	5539	NR_106715	102466515		NR_106715	ENSG00000284081	MIR1199	hsa-mir-1199	microRNA 1199	ncRNA
215970	chr8	8779701	8780080	+	0	NA	Intergenic	Intergenic	77953	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
108589	chr18	75210301	75212950	+	0	NA	5' UTR (NM_001308210, exon 1 of 2)	5' UTR (NM_001308210, exon 1 of 2)	828	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
171055	chr3	195269301	195269500	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	1759	NM_152531	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
223387	chr8	143913551	143913650	+	0	NA	Intergenic	Intergenic	25997	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
238587	chrX	153887471	153887830	+	0	NA	intron (NR_130768, intron 6 of 6)	intron (NR_130768, intron 6 of 6)	-1477	NM_001278116	3897		NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|HYCX|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
160425	chr3	28295821	28296400	+	0	NA	intron (NM_001331186, intron 3 of 4)	intron (NM_001331186, intron 3 of 4)	-52611	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
15637	chr1	150693701	150694100	+	0	NA	intron (NM_018178, intron 2 of 4)	AluSx1|SINE|Alu	3254	NM_018178	55204		NM_018178	ENSG00000143457	GOLPH3L	GPP34R	golgi phosphoprotein 3 like	protein-coding
25744	chr10	9166871	9167030	+	0	NA	Intergenic	Intergenic	-108663	NR_108039	100507163		NR_108039		LINC00709	-	long intergenic non-protein coding RNA 709	ncRNA
44545	chr11	108111201	108111430	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-10252	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
231760	chr9	132232671	132233430	+	0	NA	intron (NM_032536, intron 5 of 7)	intron (NM_032536, intron 5 of 7)	70992	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
107152	chr18	35240391	35241380	+	0	NA	promoter-TSS (NM_001135178)	promoter-TSS (NM_001135178)	-149	NM_032347	84307		NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
89915	chr16	89709801	89710080	+	0	NA	intron (NM_004913, intron 10 of 14)	intron (NM_004913, intron 10 of 14)	-1916	NR_036480	100128881		NR_036480	ENSG00000261373	VPS9D1-AS1	MYU	VPS9D1 antisense RNA 1	ncRNA
53446	chr12	65189001	65189400	+	0	NA	intron (NM_001167614, intron 1 of 12)	MER44A|DNA|TcMar-Tigger	19617	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
183482	chr5	79261221	79262050	+	0	NA	intron (NM_152405, intron 1 of 10)	PRIMA4_LTR|LTR|ERV1	25504	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
9142	chr1	45505521	45505780	+	0	NA	intron (NM_015506, intron 1 of 3)	AluSc8|SINE|Alu	5350	NM_001330540	25974		NM_015506	ENSG00000132763	MMACHC	cblC	metabolism of cobalamin associated C	protein-coding
148293	chr20	63709521	63710000	+	0	NA	intron (NM_181485, intron 2 of 6)	AluJb|SINE|Alu	1721	NM_181485	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
114784	chr19	13771421	13771680	+	0	NA	intron (NR_138051, intron 6 of 6)	AluJr4|SINE|Alu	-2906	NM_014047	28974		NM_014047	ENSG00000104979	C19orf53	HSPC023|L10K|LYDG10	chromosome 19 open reading frame 53	protein-coding
149101	chr21	16556851	16556950	+	0	NA	intron (NR_136547, intron 2 of 2)	AluY|SINE|Alu	17072	NR_029480	406885		NR_029480	ENSG00000199030	MIRLET7C	LET7C|MIRNLET7C|hsa-let-7c|let-7c	microRNA let-7c	ncRNA
106742	chr18	23540601	23541280	+	0	NA	intron (NM_000271, intron 16 of 24)	intron (NM_000271, intron 16 of 24)	37429	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
68154	chr14	75567771	75568130	+	0	NA	Intergenic	Intergenic	-10670	NM_017791	55640		NM_017791	ENSG00000119686	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2	FLVCR choline and putative heme transporter 2	protein-coding
202957	chr6	161223671	161224030	+	0	NA	intron (NM_020133, intron 2 of 8)	MIR|SINE|MIR	50211	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
132959	chr2	111467671	111467830	+	0	NA	intron (NR_024373, intron 1 of 1)	MLT2D|LTR|ERVL	27411	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
116486	chr19	18112271	18112430	+	0	NA	intron (NM_015016, intron 2 of 26)	AluSz|SINE|Alu	-13534	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
84050	chr16	29577421	29577880	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSx|SINE|Alu	17442	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
239038	chrY	7099871	7100030	+	0	NA	Intergenic	Intergenic	-174022	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
40257	chr11	63738501	63738980	+	0	NA	intron (NM_001265589, intron 3 of 8)	intron (NM_001265589, intron 3 of 8)	30035	NM_001144936	65998		NM_023941	ENSG00000188070	ZFTA	C11orf95	zinc finger translocation associated	protein-coding
159100	chr3	12555071	12555300	+	0	NA	intron (NR_165360, intron 1 of 1)	AluSx|SINE|Alu	-1829	NM_001271707	23609		NM_014160	ENSG00000075975	MKRN2	HSPC070|RNF62	makorin ring finger protein 2	protein-coding
218209	chr8	42017321	42017930	+	0	NA	intron (NM_001305878, intron 2 of 13)	L2b|LINE|L2	-34125	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
32077	chr10	101120951	101122130	+	0	NA	intron (NR_130724, intron 2 of 2)	intron (NR_130724, intron 2 of 2)	9606	NR_130723	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
62315	chr13	99044521	99045100	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-29025	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
141992	chr20	1422921	1423180	+	0	NA	Intergenic	L2a|LINE|L2	-29878	NM_054014	2280		NM_000801	ENSG00000088832	FKBP1A	FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE	FKBP prolyl isomerase 1A	protein-coding
190551	chr5	180792621	180793080	+	0	NA	exon (NM_001114620, exon 2 of 2)	exon (NM_001114620, exon 2 of 2)	9956	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
180295	chr5	4191821	4192080	+	0	NA	Intergenic	Intergenic	-581531	NR_104619	101929153		NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
170328	chr3	184377171	184377330	+	0	NA	intron (NM_001290028, intron 1 of 5)	intron (NM_001290028, intron 1 of 5)	957	NM_000460	7066		NM_000460	ENSG00000090534	THPO	CAMT2|MGDF|MKCSF|ML|MPLLG|THC9|THCYT1|TPO	thrombopoietin	protein-coding
231491	chr9	131388921	131389180	+	0	NA	intron (NM_001384822, intron 1 of 30)	AluSx3|SINE|Alu	-5036	NM_001384821	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
19553	chr1	179030721	179030980	+	0	NA	intron (NM_001324311, intron 1 of 7)	L2c|LINE|L2	4726	NM_001324311	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
132609	chr2	108594971	108595280	+	0	NA	intron (NM_001193488, intron 1 of 9)	intron (NM_001193488, intron 1 of 9)	6819	NM_004987	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
48091	chr12	7339671	7339830	+	0	NA	Intergenic	Intergenic	35418	NM_001080454	341392		NM_001080454	ENSG00000215009	ACSM4	-	acyl-CoA synthetase medium chain family member 4	protein-coding
129749	chr2	70981971	70982130	+	0	NA	exon (NM_001369683, exon 4 of 6)	exon (NM_001369683, exon 4 of 6)	3420	NM_024933	79998		NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
202607	chr6	158722101	158722300	+	0	NA	intron (NM_001318745, intron 7 of 14)	AluJb|SINE|Alu	42553	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
179979	chr5	861671	862250	+	0	NA	Intergenic	Intergenic	-10974	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
185062	chr5	116084321	116085950	+	0	NA	promoter-TSS (NM_001308080)	promoter-TSS (NM_001308080)	110	NR_146220	51397		NM_016144	ENSG00000145781	COMMD10	PTD002	COMM domain containing 10	protein-coding
118449	chr19	35865621	35866130	+	0	NA	intron (NM_032123, intron 14 of 15)	intron (NM_032123, intron 14 of 15)	-2570	NM_005166	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
209144	chr7	75129751	75129950	+	0	NA	intron (NM_001003795, intron 8 of 15)	intron (NM_001003795, intron 8 of 15)	35818	NM_001368302	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
226094	chr9	62830851	62831350	+	0	NA	Intergenic	CpG	7246	NR_135128	100132249		NR_135128		LOC100132249	-	uncharacterized LOC100132249	ncRNA
37094	chr11	13238871	13239380	+	0	NA	Intergenic	Intergenic	-37527	NM_001351804	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
155232	chr22	37920051	37920350	+	0	NA	intron (NM_033386, intron 5 of 15)	intron (NM_033386, intron 5 of 15)	13903	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
25056	chr10	3784501	3787480	+	0	NA	promoter-TSS (NM_001160125)	promoter-TSS (NM_001160125)	-709	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
127003	chr2	36805851	36806430	+	0	NA	intron (NM_053276, intron 14 of 15)	intron (NM_053276, intron 14 of 15)	109433	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
234150	chrX	10111601	10112380	+	0	NA	intron (NM_015691, intron 9 of 22)	intron (NM_015691, intron 9 of 22)	-44955	NM_001256944	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
138178	chr2	202647451	202647750	+	0	NA	intron (NM_173511, intron 1 of 7)	Charlie6|DNA|hAT-Charlie	12631	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
134656	chr2	144452201	144453500	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-66764	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
146678	chr20	50517471	50517970	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	7337	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
142125	chr20	2693001	2694500	+	0	NA	exon (NM_001110514, exon 2 of 18)	exon (NM_001110514, exon 2 of 18)	872	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
220116	chr8	94623421	94623700	+	0	NA	Intergenic	Intergenic	15907	NR_034034	100288748		NR_034034	ENSG00000261437	LINC02894	-	long intergenic non-protein coding RNA 2894	ncRNA
197706	chr6	85677301	85677680	+	0	NA	promoter-TSS (NR_002743)	promoter-TSS (NR_002743)	-122	NR_002743	26799		NR_002743		SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
189353	chr5	172285751	172286130	+	0	NA	intron (NR_130933, intron 1 of 1)	MIRb|SINE|MIR	343	NR_130933	100288254		NM_001007542		LOC100288254	-	uncharacterized LOC100288254	ncRNA
120610	chr19	45030121	45030580	+	0	NA	intron (NM_006509, intron 7 of 10)	AluSz|SINE|Alu	-8695	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
10419	chr1	65422371	65422980	+	0	NA	intron (NM_001198681, intron 2 of 4)	L2c|LINE|L2	1959	NM_001198681	54741		NM_017526	ENSG00000213625	LEPROT	LEPR|OB-RGRP|OBRGRP|VPS55	leptin receptor overlapping transcript	protein-coding
216225	chr8	12182351	12183080	+	0	NA	TTS (NR_148876)	TTS (NR_148876)	-3021	NR_146925	619423		NR_146925		FAM85A	-	family with sequence similarity 85 member A	ncRNA
5652	chr1	26285971	26286280	+	0	NA	intron (NM_001077262, intron 4 of 10)	intron (NM_001077262, intron 4 of 10)	6039	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
168060	chr3	137032471	137032980	+	0	NA	Intergenic	CpG	74742	NM_144717	53833		NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
23650	chr1	230971871	230972130	+	0	NA	intron (NM_024525, intron 1 of 22)	intron (NM_024525, intron 1 of 22)	6861	NM_001376509	79573		NM_024525	ENSG00000143643	TTC13	-	tetratricopeptide repeat domain 13	protein-coding
14708	chr1	145931671	145931830	+	0	NA	intron (NR_147182, intron 2 of 2)	L2|LINE|L2	-4266	NM_005105	9939		NM_005105	ENSG00000265241	RBM8A	BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1	RNA binding motif protein 8A	protein-coding
123854	chr19	55248671	55249180	+	0	NA	intron (NM_014931, intron 1 of 23)	intron (NM_014931, intron 1 of 23)	-3675	NR_106861	102466739		NR_106861	ENSG00000278264	MIR6803	hsa-mir-6803	microRNA 6803	ncRNA
140994	chr2	238070171	238070330	+	0	NA	intron (NM_016510, intron 4 of 11)	intron (NM_016510, intron 4 of 11)	9249	NM_016510	51540		NM_016510	ENSG00000132330	SCLY	SCL|hSCL	selenocysteine lyase	protein-coding
113801	chr19	10573601	10573950	+	0	NA	intron (NM_001300887, intron 11 of 11)	AluJr|SINE|Alu	-4796	NM_079421	1032		NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
177335	chr4	109816971	109817600	+	0	NA	intron (NM_032993, intron 2 of 6)	intron (NM_032993, intron 2 of 6)	1523	NM_018983	54433		NM_018983	ENSG00000109534	GAR1	NOLA1	GAR1 ribonucleoprotein	protein-coding
134906	chr2	149573721	149573980	+	0	NA	intron (NM_015702, intron 6 of 7)	intron (NM_015702, intron 6 of 7)	-13508	NR_110240	101929231		NR_110240	ENSG00000231969	MMADHC-DT	-	MMADHC divergent transcript	ncRNA
162204	chr3	47012101	47012300	+	0	NA	intron (NR_024046, intron 1 of 3)	intron (NR_024046, intron 1 of 3)	658	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
239292	chrY	14343971	14344130	+	0	NA	Intergenic	Intergenic	-178566	NM_001365591	22829		NM_014893	ENSG00000165246	NLGN4Y	HNL4Y	neuroligin 4 Y-linked	protein-coding
113665	chr19	10385721	10386480	+	0	NA	Intergenic	MIRb|SINE|MIR	-5528	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
95052	chr17	32553351	32553450	+	0	NA	intron (NM_015194, intron 21 of 21)	L2c|LINE|L2	66407	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
2820	chr1	11031421	11031680	+	0	NA	intron (NM_006610, intron 8 of 10)	intron (NM_006610, intron 8 of 10)	15689	NM_139208	10747		NM_006610	ENSG00000009724	MASP2	MAP-2|MAP19|MASP-2|MASP1P1|sMAP	MBL associated serine protease 2	protein-coding
59588	chr13	27483021	27483280	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-32548	NM_001166263	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
173963	chr4	26020201	26020600	+	0	NA	Intergenic	MER41B|LTR|ERV1	106208	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
184573	chr5	102813921	102814050	+	0	NA	intron (NM_001364582, intron 1 of 24)	intron (NM_001364582, intron 1 of 24)	5787	NM_001364582	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
106546	chr18	21604801	21605200	+	0	NA	Intergenic	Intergenic	-4296	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
15720	chr1	151043001	151043900	+	0	NA	intron (NM_138278, intron 6 of 9)	intron (NM_138278, intron 6 of 9)	-4301	NM_017860	54964		NM_017860	ENSG00000143443	C1orf56	MENT	chromosome 1 open reading frame 56	protein-coding
20494	chr1	198648221	198648900	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	9520	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
191067	chr6	3360651	3360950	+	0	NA	intron (NM_001382320, intron 1 of 1)	intron (NM_001382320, intron 1 of 1)	-36650	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
108355	chr18	67455221	67455880	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-60996	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
204848	chr7	5782671	5782850	+	0	NA	Intergenic	AluSz|SINE|Alu	-1097	NM_207116	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
130348	chr2	85005851	85007150	+	0	NA	intron (NM_020122, intron 1 of 6)	AluY|SINE|Alu	35339	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
14342	chr1	143976221	143976850	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-3016	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
143788	chr20	32450521	32450830	+	0	NA	intron (NM_080616, intron 7 of 7)	intron (NM_080616, intron 7 of 7)	32815	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
2483	chr1	9671201	9671850	+	0	NA	TTS (NR_126366)	TTS (NR_126366)	16049	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
210759	chr7	100685871	100686030	+	0	NA	intron (NR_164719, intron 13 of 26)	(GCCCAG)n|Simple_repeat|Simple_repeat	8300	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
126297	chr2	27219151	27219250	+	0	NA	intron (NM_001306079, intron 2 of 42)	intron (NM_001306079, intron 2 of 42)	1810	NM_001306079	790		NM_004341	ENSG00000084774	CAD	CDG1Z|DEE50|EIEE50|GATD4	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding
196190	chr6	42693551	42694180	+	0	NA	TTS (NM_015255)	TTS (NM_015255)	28732	NM_000322	5961		NM_000322	ENSG00000112619	PRPH2	AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2	peripherin 2	protein-coding
77606	chr15	85327851	85328150	+	0	NA	Intergenic	Intergenic	-52596	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
95544	chr17	36641671	36642750	+	0	NA	Intergenic	CpG	40627	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
109994	chr19	1419851	1420650	+	0	NA	intron (NM_001352033, intron 4 of 11)	CpG	12664	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
167438	chr3	129058001	129058700	+	0	NA	Intergenic	Intergenic	-2429	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
59312	chr13	24290051	24290350	+	0	NA	intron (NM_153023, intron 7 of 11)	intron (NM_153023, intron 7 of 11)	-16966	NM_001303138	338872		NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and TNF related 9	protein-coding
136453	chr2	176855251	176855750	+	0	NA	Intergenic	Intergenic	217746	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
7479	chr1	33146601	33147000	+	0	NA	3' UTR (NM_018207, exon 5 of 5)	3' UTR (NM_018207, exon 5 of 5)	29750	NM_001330483	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
330	chr1	991221	991680	+	0	NA	Intergenic	AluJb|SINE|Alu	8647	NM_021170	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
11906	chr1	93349021	93349280	+	0	NA	intron (NM_001938, intron 1 of 2)	intron (NM_001938, intron 1 of 2)	3243	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
182277	chr5	57220571	57221300	+	0	NA	intron (NM_001331037, intron 3 of 12)	intron (NM_001331037, intron 3 of 12)	6861	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
171583	chr3	197024071	197024500	+	0	NA	intron (NM_033316, intron 4 of 6)	intron (NM_033316, intron 4 of 6)	5532	NM_033316	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
222863	chr8	142717901	142718410	+	0	NA	intron (NR_038925, intron 1 of 2)	intron (NR_038925, intron 1 of 2)	8818	NR_038925	100288181		NR_038925	ENSG00000253741	LNCOC1	Lnc-OC1	lncRNA associated with ovarian cancer 1	ncRNA
39618	chr11	61412201	61412400	+	0	NA	intron (NR_165413, intron 8 of 10)	AluY|SINE|Alu	17675	NM_024811	79869		NM_024811	ENSG00000149532	CPSF7	CFIm59	cleavage and polyadenylation specific factor 7	protein-coding
126122	chr2	26045501	26045900	+	0	NA	intron (NM_016131, intron 1 of 5)	intron (NM_016131, intron 1 of 5)	11616	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
6493	chr1	28437771	28438130	+	0	NA	promoter-TSS (NM_023923)	promoter-TSS (NM_023923)	-200	NM_023923	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
141274	chr2	240026951	240027250	+	0	NA	Intergenic	LTR6B|LTR|ERV1	-1698	NM_001322019	4705		NM_004544	ENSG00000130414	NDUFA10	CI-42KD|CI-42k|MC1DN22	NADH:ubiquinone oxidoreductase subunit A10	protein-coding
198364	chr6	105431201	105431500	+	0	NA	Intergenic	MIR3|SINE|MIR	-28268	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
184240	chr5	96660271	96661700	+	0	NA	Intergenic	Intergenic	-1052	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
92195	chr17	7840001	7840580	+	0	NA	intron (NM_001348716, intron 1 of 22)	intron (NM_001348716, intron 1 of 22)	373	NM_001080424	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
170686	chr3	187769751	187770480	+	0	NA	Intergenic	MIR3|SINE|MIR	-24647	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
99347	chr17	49862201	49863030	+	0	NA	Intergenic	Intergenic	-14598	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
239127	chrY	11307871	11308480	+	0	NA	Intergenic	CpG	1113415	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
217632	chr8	30057571	30058650	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	24954	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
218424	chr8	47687371	47687530	+	0	NA	intron (NR_148204, intron 11 of 19)	L1ME3Cz|LINE|L1	27786	NM_001352960	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
57809	chr12	123135071	123135430	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	15840	NM_020845	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
109129	chr18	80159601	80160280	+	0	NA	exon (NM_032510, exon 3 of 3)	exon (NM_032510, exon 3 of 3)	12016	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
33104	chr10	110962601	110962800	+	0	NA	intron (NM_001324337, intron 2 of 9)	intron (NM_001324337, intron 2 of 9)	-25445	NR_026715	644511		NR_026715	ENSG00000234118	RPL13AP6	RPL13A_7_1096|bA348N5.5	ribosomal protein L13a pseudogene 6	pseudo
153486	chr22	26398621	26399000	+	0	NA	Intergenic	Intergenic	-30450	NM_020437	57168		NM_020437	ENSG00000128203	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
220733	chr8	102106171	102107100	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	17699	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
74373	chr15	58769521	58769900	+	0	NA	intron (NR_135474, intron 1 of 1)	AluY|SINE|Alu	1264	NR_135474	101928725		NR_135474	ENSG00000245975	MINDY2-DT	-	MINDY2 divergent transcript	ncRNA
98072	chr17	45492321	45492580	+	0	NA	Intergenic	Intergenic	-1729	NR_027782	9842		NM_014798	ENSG00000225190	PLEKHM1	AP162|B2|OPTA3|OPTB6	pleckstrin homology and RUN domain containing M1	protein-coding
147245	chr20	57419121	57419850	+	0	NA	Intergenic	L1PA6|LINE|L1	-26429	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
178513	chr4	150867021	150867380	+	0	NA	intron (NM_001367550, intron 22 of 56)	intron (NM_001367550, intron 22 of 56)	148067	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
212755	chr7	129931901	129932100	+	0	NA	intron (NM_001202498, intron 1 of 6)	AluSg|SINE|Alu	20960	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
34215	chr10	129889101	129889330	+	0	NA	intron (NM_001375379, intron 6 of 15)	intron (NM_001375379, intron 6 of 15)	-45841	NR_036179	100422873		NR_036179	ENSG00000266676	MIR4297	-	microRNA 4297	ncRNA
76748	chr15	76342771	76343730	+	0	NA	TTS (NM_145805)	TTS (NM_145805)	6477	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
53827	chr12	69357301	69358450	+	0	NA	Intergenic	Intergenic	-1835	NM_001300950	8089		NM_006530	ENSG00000127337	YEATS4	4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9	YEATS domain containing 4	protein-coding
101471	chr17	67473401	67473600	+	0	NA	intron (NM_181671, intron 1 of 9)	AluYc|SINE|Alu	-1915	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
92408	chr17	8376201	8377230	+	0	NA	promoter-TSS (NM_001304947)	promoter-TSS (NM_001304947)	-11	NM_001304947	124751		NM_213597	ENSG00000184619	KRBA2	-	KRAB-A domain containing 2	protein-coding
74425	chr15	59137751	59138440	+	0	NA	intron (NM_004998, intron 27 of 27)	intron (NM_004998, intron 27 of 27)	32949	NM_004701	9133		NM_004701	ENSG00000157456	CCNB2	HsT17299	cyclin B2	protein-coding
1546	chr1	3477021	3477600	+	0	NA	intron (NM_014448, intron 10 of 14)	intron (NM_014448, intron 10 of 14)	22645	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
92160	chr17	7685501	7686900	+	0	NA	5' UTR (NM_001143990, exon 1 of 11)	5' UTR (NM_001143990, exon 1 of 11)	129	NM_001143990	55135		NM_018081	ENSG00000141499	WRAP53	DKCB3|TCAB1|WDR79	WD repeat containing antisense to TP53	protein-coding
154773	chr22	36526301	36526500	+	0	NA	intron (NR_156418, intron 1 of 14)	intron (NR_156418, intron 1 of 14)	2766	NM_003753	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
156350	chr22	40855921	40857880	+	0	NA	promoter-TSS (NM_003932)	promoter-TSS (NM_003932)	108	NM_001278589	6767		NM_003932	ENSG00000100380	ST13	AAG2|FAM10A1|FAM10A4|HIP|HOP|HSPABP|HSPABP1|P48|PRO0786|SNC6	ST13 Hsp70 interacting protein	protein-coding
167867	chr3	134479451	134479950	+	0	NA	intron (NM_015391, intron 2 of 2)	intron (NM_015391, intron 2 of 2)	-6024	NM_001353109	80254		NM_025180	ENSG00000182923	CEP63	SCKL6	centrosomal protein 63	protein-coding
6003	chr1	27008521	27008780	+	0	NA	intron (NM_052943, intron 1 of 1)	AluSx1|SINE|Alu	4200	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
127309	chr2	38763051	38763750	+	0	NA	Intergenic	Intergenic	-11906	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
28283	chr10	46028401	46029030	+	0	NA	intron (NM_001145261, intron 1 of 10)	L2b|LINE|L2	1999	NM_001145263	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
69090	chr14	92119201	92119650	+	0	NA	intron (NM_004545, intron 1 of 2)	MIR|SINE|MIR	2281	NM_004545	4707		NM_004545	ENSG00000183648	NDUFB1	CI-MNLL|CI-SGDH|MNLL	NADH:ubiquinone oxidoreductase subunit B1	protein-coding
30832	chr10	86402501	86403250	+	0	NA	Intergenic	Intergenic	-36080	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
205412	chr7	16603671	16603830	+	0	NA	intron (NM_020319, intron 8 of 9)	MLT1H|LTR|ERVL-MaLR	42004	NM_020319	57037		NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
210931	chr7	101238851	101239500	+	0	NA	promoter-TSS (NM_001185080)	promoter-TSS (NM_001185080)	-355	NM_001185080	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
21595	chr1	206550501	206550900	+	0	NA	intron (NM_182663, intron 2 of 5)	intron (NM_182663, intron 2 of 5)	-6464	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
1412	chr1	2563351	2563830	+	0	NA	3' UTR (NM_003820, exon 8 of 8).2	3' UTR (NM_003820, exon 8 of 8).2	-2945	NR_121638	100996583		NR_121638	ENSG00000228037	LOC100996583	-	uncharacterized LOC100996583	ncRNA
75165	chr15	64649351	64649650	+	0	NA	intron (NM_015042, intron 3 of 9)	intron (NM_015042, intron 3 of 9)	53781	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
215858	chr8	7354571	7355630	+	0	NA	TTS (NM_001164457)	TTS (NM_001164457)	263	NR_027423	100128890		NR_027423	ENSG00000215374	FAM66B	FAM66E	family with sequence similarity 66 member B	ncRNA
193228	chr6	29886171	29886880	+	0	NA	Intergenic	Intergenic	-1048	NR_001434	3136		NR_001434		HLA-H	HLAHP	major histocompatibility complex, class I, H (pseudogene)	pseudo
52973	chr12	57475921	57477000	+	0	NA	intron (NM_001080156, intron 5 of 15)	intron (NM_001080156, intron 5 of 15)	1407	NM_001319851	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
192381	chr6	24716371	24717030	+	0	NA	intron (NM_030939, intron 1 of 4)	intron (NM_030939, intron 1 of 4)	2454	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
166923	chr3	125053621	125054000	+	0	NA	intron (NM_020733, intron 1 of 16)	intron (NM_020733, intron 1 of 16)	2187	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
181641	chr5	49659241	49660250	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	781543	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
154674	chr22	36362101	36362480	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	25677	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
28076	chr10	43348201	43348820	+	0	NA	Intergenic	Intergenic	-23126	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
76302	chr15	74320671	74320850	+	0	NA	intron (NM_182791, intron 1 of 8)	intron (NM_182791, intron 1 of 8)	2201	NM_182791	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
103336	chr17	77999001	77999200	+	0	NA	Intergenic	L1MEf|LINE|L1	-5137	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
89630	chr16	89323351	89323900	+	0	NA	intron (NR_168302, intron 2 of 3)	intron (NR_168302, intron 2 of 3)	3173	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
140129	chr2	231541571	231541930	+	0	NA	Intergenic	Intergenic	-11305	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
201255	chr6	144123821	144124080	+	0	NA	Intergenic	Intergenic	-26567	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
69065	chr14	91947071	91947780	+	0	NA	promoter-TSS (NM_001384159)	promoter-TSS (NM_001384159)	269	NM_001384158	10516		NM_006329	ENSG00000140092	FBLN5	ADCL2|ARCL1A|ARMD3|CMT1H|DANCE|EVEC|FIBL-5|HNARMD|UP50	fibulin 5	protein-coding
199891	chr6	127843501	127843700	+	0	NA	intron (NM_001318531, intron 2 of 6).2	MER33|DNA|hAT-Charlie	11588	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
44458	chr11	104959201	104959400	+	0	NA	intron (NM_033306, intron 1 of 9)	L1MA8|LINE|L1	9274	NM_001225	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
146351	chr20	49251201	49251400	+	0	NA	intron (NM_021035, intron 13 of 13)	AluSz|SINE|Alu	26757	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
132812	chr2	110550021	110550700	+	0	NA	intron (NM_032260, intron 9 of 19).2	MER5B|DNA|hAT-Charlie	26540	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
157026	chr22	42555221	42556330	+	0	NA	intron (NR_104301, intron 4 of 10)	intron (NR_104301, intron 4 of 10)	1819	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
76971	chr15	78177371	78177630	+	0	NA	intron (NM_001199377, intron 11 of 13)	intron (NM_001199377, intron 11 of 13)	28138	NM_005530	3419		NM_005530	ENSG00000166411	IDH3A	RP90	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein-coding
220634	chr8	100945951	100946450	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	4371	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
8069	chr1	38993121	38993750	+	0	NA	intron (NM_001136275, intron 1 of 3)	AluSc8|SINE|Alu	2159	NM_024595	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
21560	chr1	206380951	206381200	+	0	NA	intron (NM_001377446, intron 4 of 21)	intron (NM_001377446, intron 4 of 21)	-89401	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
160316	chr3	27526671	27527230	+	0	NA	Intergenic	Intergenic	-42566	NM_001321103	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
75190	chr15	64780401	64780600	+	0	NA	Intergenic	AluSz|SINE|Alu	-4911	NM_194272	348093		NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
11337	chr1	89541651	89541750	+	0	NA	intron (NM_001369819, intron 2 of 6)	AluYa5|SINE|Alu	16871	NM_001369819	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
189059	chr5	170256171	170256530	+	0	NA	intron (NM_005565, intron 17 of 20)	intron (NM_005565, intron 17 of 20)	23344	NM_001305393	133874		NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
129572	chr2	69948501	69948700	+	0	NA	Intergenic	Intergenic	13665	NM_152792	151516		NM_152792	ENSG00000244617	ASPRV1	ADLI|MUNO|SASP|SASPase|Taps	aspartic peptidase retroviral like 1	protein-coding
205741	chr7	23500101	23500350	+	0	NA	Intergenic	Intergenic	9837	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
179690	chr4	190088921	190089500	+	0	NA	Intergenic	CpG	23981	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
17745	chr1	158996151	158997130	+	0	NA	Intergenic	AluYm1|SINE|Alu	-3336	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
45066	chr11	117060421	117060680	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSq2|SINE|Alu	37878	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
144121	chr20	33997521	33997830	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-3308	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
221389	chr8	123415171	123415330	+	0	NA	Intergenic	L1PBa|LINE|L1	-1475	NR_133926	55093		NM_018024	ENSG00000156795	NTAQ1	C8orf32|WDYHV1	N-terminal glutamine amidase 1	protein-coding
11139	chr1	86714221	86714900	+	0	NA	intron (NM_001206653, intron 1 of 7)	intron (NM_001206653, intron 1 of 7)	9984	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
192887	chr6	27485921	27486180	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-12932	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
15131	chr1	148699471	148699630	+	0	NA	Intergenic	Intergenic	-19786	NM_001364008	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
49414	chr12	22631171	22631350	+	0	NA	intron (NM_001039481, intron 1 of 2)	AluSp|SINE|Alu	6089	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
43695	chr11	85948001	85948430	+	0	NA	Intergenic	Intergenic	92832	NM_001286159	220047		NM_173556	ENSG00000150676	CCDC83	CT148|HSD9|KP-CoT-23	coiled-coil domain containing 83	protein-coding
167361	chr3	128774801	128775400	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	48917	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
170263	chr3	184261111	184262100	+	0	NA	promoter-TSS (NM_033259)	promoter-TSS (NM_033259)	-52	NM_033259	94032		NM_033259	ENSG00000163888	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin dependent protein kinase II inhibitor 2	protein-coding
15838	chr1	151348871	151349230	+	0	NA	Intergenic	AluSp|SINE|Alu	-1798	NM_001025603	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
146857	chr20	51440501	51440980	+	0	NA	intron (NM_173091, intron 6 of 9)	intron (NM_173091, intron 6 of 9)	12237	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
199397	chr6	116393471	116393630	+	0	NA	intron (NM_001322944, intron 1 of 4)	MIRb|SINE|MIR	-21831	NR_148944	100287467		NR_148944		LOC100287467	-	uncharacterized LOC100287467	ncRNA
103517	chr17	78471771	78472130	+	0	NA	intron (NM_173628, intron 54 of 80)	intron (NM_173628, intron 54 of 80)	-12960	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
233519	chrM	13701	14500	+	0	NA	Intergenic	Intergenic	-6586	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
228319	chr9	98234551	98234650	+	0	NA	intron (NM_018421, intron 3 of 12)	intron (NM_018421, intron 3 of 12)	-5383	NR_106913	102465514		NR_106913	ENSG00000278412	MIR6854	hsa-mir-6854	microRNA 6854	ncRNA
90987	chr17	2713271	2713430	+	0	NA	TTS (NR_136412)	TTS (NR_136412)	1041	NR_136412	105371592		NR_136412		LOC105371592	-	uncharacterized LOC105371592	ncRNA
106579	chr18	21997451	21998100	+	0	NA	Intergenic	Intergenic	-166369	NR_110369	102723167		NR_110369	ENSG00000265142	MIR133A1HG	MIR1-2HG	MIR133A1 host gene	ncRNA
195489	chr6	37155421	37156030	+	0	NA	Intergenic	Intergenic	-14427	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
236577	chrX	72714351	72714650	+	0	NA	promoter-TSS (NM_002637)	promoter-TSS (NM_002637)	-194	NM_002637	5255		NM_002637	ENSG00000067177	PHKA1	PHKA	phosphorylase kinase regulatory subunit alpha 1	protein-coding
40531	chr11	64297221	64297480	+	0	NA	intron (NR_133660, intron 3 of 5)	intron (NR_133660, intron 3 of 5)	-3008	NM_001039496	25858		NM_001039496	ENSG00000219435	CATSPERZ	C11orf20|TEX40	catsper channel auxiliary subunit zeta	protein-coding
154120	chr22	31112451	31112930	+	0	NA	Intergenic	LTR12|LTR|ERV1	-5122	NM_080430	140606		NM_080430	ENSG00000198832	SELENOM	SELM|SEPM	selenoprotein M	protein-coding
44810	chr11	113860771	113861130	+	0	NA	intron (NM_020886, intron 1 of 24)	AluYf1|SINE|Alu	14622	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
43660	chr11	85739771	85740180	+	0	NA	intron (NM_032943, intron 4 of 18)	intron (NM_032943, intron 4 of 18)	18094	NM_001162951	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
214939	chr7	151727671	151728030	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	8413	NM_001363698	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
58527	chr12	132213001	132213750	+	0	NA	intron (NM_001122636, intron 6 of 10)	MLT2C1|LTR|ERVL	-7347	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
47346	chr12	1915321	1916200	+	0	NA	intron (NM_172364, intron 1 of 37)	intron (NM_172364, intron 1 of 37)	2892	NM_172364	93589		NM_172364	ENSG00000151062	CACNA2D4	RCD4	calcium voltage-gated channel auxiliary subunit alpha2delta 4	protein-coding
160537	chr3	30664801	30665680	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	58639	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
103491	chr17	78378321	78379480	+	0	NA	intron (NR_111989, intron 1 of 8)	CpG	251	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
26207	chr10	14563571	14563730	+	0	NA	intron (NM_001320736, intron 1 of 4)	Charlie1a|DNA|hAT-Charlie	-7470	NM_001320738	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
37324	chr11	14820901	14821300	+	0	NA	intron (NM_001363569, intron 7 of 15)	MLT1G3|LTR|ERVL-MaLR	70571	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
80234	chr16	2193451	2193550	+	0	NA	intron (NM_020764, intron 1 of 19)	intron (NM_020764, intron 1 of 19)	3105	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
157277	chr22	44085721	44086030	+	0	NA	intron (NM_001243385, intron 1 of 12)	intron (NM_001243385, intron 1 of 12)	16758	NM_001243385	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
162810	chr3	49124051	49124750	+	0	NA	exon (NM_002292, exon 22 of 32)	exon (NM_002292, exon 22 of 32)	-3462	NM_001351105	10869		NM_006677	ENSG00000172046	USP19	ZMYND9	ubiquitin specific peptidase 19	protein-coding
129465	chr2	69574301	69574880	+	0	NA	intron (NM_001371577, intron 2 of 14)	FAM|SINE|Alu	-54419	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
65921	chr14	55328071	55328230	+	0	NA	intron (NM_152231, intron 1 of 1)	AluSz6|SINE|Alu	55996	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
176594	chr4	98930971	98931480	+	0	NA	promoter-TSS (NM_001331017)	promoter-TSS (NM_001331017)	-588	NM_001968	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
61929	chr13	78587501	78587700	+	0	NA	intron (NR_047001, intron 3 of 5)	intron (NR_047001, intron 3 of 5)	-8522	NR_158457	780529		NR_158457	ENSG00000271776	LOC780529	-	uncharacterized LOC780529	ncRNA
18220	chr1	161018471	161019130	+	0	NA	intron (NM_001382733, intron 1 of 9)	intron (NM_001382733, intron 1 of 9)	2352	NM_001348091	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
51884	chr12	53504201	53504500	+	0	NA	intron (NM_134323, intron 4 of 8)	intron (NM_134323, intron 4 of 8)	2764	NM_134324	6895		NM_004178	ENSG00000139546	TARBP2	LOQS|TRBP|TRBP1|TRBP2	TARBP2 subunit of RISC loading complex	protein-coding
34654	chr10	133332651	133332750	+	0	NA	intron (NM_015722, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	4196	NM_015722	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
10843	chr1	77956601	77957230	+	0	NA	intron (NR_146539, intron 16 of 22)	MIRc|SINE|MIR	22157	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
114032	chr19	10931001	10931600	+	0	NA	Intergenic	AluY|SINE|Alu	2489	NM_138358	90580		NM_138358	ENSG00000142444	TIMM29	C19orf52|TIM29	translocase of inner mitochondrial membrane 29	protein-coding
99149	chr17	49354421	49354680	+	0	NA	intron (NR_135579, intron 1 of 7)	AluSx3|SINE|Alu	-6615	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
94087	chr17	27599601	27600580	+	0	NA	intron (NM_001367810, intron 9 of 18)	Tigger3b|DNA|TcMar-Tigger	-31098	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
79246	chr16	396351	398230	+	0	NA	promoter-TSS (NM_001286438)	promoter-TSS (NM_001286438)	91	NM_001286438	4833		NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
124352	chr19	58344121	58344730	+	0	NA	TTS (NM_130786)	TTS (NM_130786)	-7545	NR_015380	503538		NR_015380	ENSG00000268895	A1BG-AS1	A1BG-AS|A1BGAS|NCRNA00181	A1BG antisense RNA 1	ncRNA
217555	chr8	29348621	29349400	+	0	NA	promoter-TSS (NM_057158)	promoter-TSS (NM_057158)	-205	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
179946	chr5	776471	776630	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	8179	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
103760	chr17	78972701	78973500	+	0	NA	exon (NM_005567, exon 5 of 6)	exon (NM_005567, exon 5 of 6)	6823	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
143294	chr20	25292801	25293200	+	0	NA	intron (NM_002862, intron 17 of 19)	intron (NM_002862, intron 17 of 19)	44915	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
80452	chr16	2675471	2675630	+	0	NA	Intergenic	AluSq4|SINE|Alu	-2111	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
118476	chr19	35898471	35900200	+	0	NA	intron (NM_032721, intron 1 of 11)	AluSx1|SINE|Alu	402	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
2570	chr1	9789471	9789850	+	0	NA	intron (NM_014944, intron 1 of 17)	L1MC5|LINE|L1	34305	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
159157	chr3	12787471	12787900	+	0	NA	Intergenic	Intergenic	-8995	NM_001162499	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
214751	chr7	151062221	151062780	+	0	NA	promoter-TSS (NM_001199693)	promoter-TSS (NM_001199693)	-47	NM_001199693	6522		NM_003040	ENSG00000164889	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3|OPTB9	solute carrier family 4 member 2	protein-coding
224704	chr9	21393701	21394030	+	0	NA	Intergenic	L1ME3A|LINE|L1	-8467	NM_000605	3440		NM_000605	ENSG00000188379	IFNA2	IFN-alpha-2|IFN-alphaA|IFNA|IFNA2B|leIF A	interferon alpha 2	protein-coding
138062	chr2	201657671	201657830	+	0	NA	intron (NM_033066, intron 16 of 21)	intron (NM_033066, intron 16 of 21)	-14247	NM_001044385	65062		NM_152388	ENSG00000155755	TMEM237	ALS2CR4|JBTS14	transmembrane protein 237	protein-coding
36931	chr11	10857051	10859200	+	0	NA	promoter-TSS (NM_001143667)	promoter-TSS (NM_001143667)	-72	NM_001143667	58486		NM_021211	ENSG00000236287	ZBED5	Buster1	zinc finger BED-type containing 5	protein-coding
25128	chr10	4067571	4067730	+	0	NA	intron (NR_120632, intron 1 of 3)	intron (NR_120632, intron 1 of 3)	15924	NR_120632								
190928	chr6	2874551	2874650	+	0	NA	intron (NR_033851, intron 1 of 1)	intron (NR_033851, intron 1 of 1)	1910	NR_033851	221756		NM_182544		SERPINB9P1	SERPINB9P	serpin family B member 9 pseudogene 1	pseudo
185178	chr5	119359771	119360150	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	3941	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
56966	chr12	120533821	120535500	+	0	NA	5' UTR (NM_014868, exon 1 of 17)	5' UTR (NM_014868, exon 1 of 17)	304	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
202650	chr6	158771701	158772300	+	0	NA	intron (NM_003379, intron 7 of 12)	intron (NM_003379, intron 7 of 12)	-7247	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
19082	chr1	170562951	170563250	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-30491	NR_125958	101928650		NR_125958		GORAB-AS1	-	GORAB antisense RNA 1	ncRNA
121219	chr19	46623451	46623750	+	0	NA	exon (NM_000960, exon 2 of 3)	exon (NM_000960, exon 2 of 3)	1489	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
96519	chr17	40336951	40337450	+	0	NA	intron (NM_001145302, intron 2 of 6)	L2b|LINE|L2	-4966	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
213231	chr7	133512421	133512750	+	0	NA	intron (NM_021807, intron 9 of 17)	L2c|LINE|L2	221704	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
102156	chr17	75124201	75125400	+	0	NA	intron (NM_024585, intron 2 of 2)	MIR|SINE|MIR	6942	NR_045513	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
69320	chr14	93206701	93207580	+	0	NA	promoter-TSS (NR_038150)	promoter-TSS (NR_038150)	-75	NM_032490	84520		NM_032490	ENSG00000170270	GON7	C14orf142|PNAS-127	GON7 subunit of KEOPS complex	protein-coding
82920	chr16	21816901	21817530	+	0	NA	intron (NR_003370, intron 3 of 11).2	MER20|DNA|hAT-Charlie	1959	NR_003370	730092		NR_003370		RRN3P1	-	RRN3 pseudogene 1	pseudo
70872	chr14	103808251	103808800	+	0	NA	intron (NM_015316, intron 1 of 16)	MER30|DNA|hAT-Charlie	39050	NM_015316	23368		NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
13269	chr1	112743751	112744300	+	0	NA	Intergenic	CpG	25120	NR_169586	284467		NM_182759	ENSG00000184599	TAFA3	FAM19A3|TAFA-3	TAFA chemokine like family member 3	protein-coding
46642	chr11	128689371	128690030	+	0	NA	intron (NM_001271012, intron 1 of 6)	MamRep1879|DNA|hAT-Tip100?	-2778	NR_135072	101929538		NR_135072	ENSG00000245008	LOC101929538	-	uncharacterized LOC101929538	ncRNA
202900	chr6	160005771	160006550	+	0	NA	non-coding (NR_047514, exon 1 of 1)	non-coding (NR_047514, exon 1 of 1)	1504	NR_047511	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
226406	chr9	70417571	70417730	+	0	NA	Intergenic	Intergenic	-2993	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
128289	chr2	54601901	54602300	+	0	NA	intron (NM_178313, intron 2 of 30)	intron (NM_178313, intron 2 of 30)	43706	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
21829	chr1	207336601	207337900	+	0	NA	intron (NM_001300904, intron 7 of 10)	intron (NM_001300904, intron 7 of 10)	15572	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
25821	chr10	11204071	11204700	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	39355	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
63763	chr14	21248451	21248550	+	0	NA	intron (NM_001077443, intron 1 of 7)	MIRb|SINE|MIR	20942	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
182026	chr5	55533971	55535600	+	0	NA	promoter-TSS (NR_001575)	promoter-TSS (NR_001575)	179	NM_003711	8611		NM_003711	ENSG00000067113	PLPP1	LLP1a|LPP1|PAP-2a|PAP2|PPAP2A	phospholipid phosphatase 1	protein-coding
227161	chr9	86414371	86414600	+	0	NA	Intergenic	Intergenic	-60075	NM_001330718	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
97711	chr17	44345001	44346230	+	0	NA	intron (NM_002087, intron 1 of 12)	intron (NM_002087, intron 1 of 12)	313	NM_002087	2896		NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin precursor	protein-coding
34333	chr10	132172501	132174300	+	0	NA	intron (NM_001105521, intron 24 of 24)	L1MC4a|LINE|L1	-13548	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
161189	chr3	39137201	39138900	+	0	NA	promoter-TSS (NR_106880)	promoter-TSS (NR_106880)	-156	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
81045	chr16	4312321	4312750	+	0	NA	Intergenic	AluSx|SINE|Alu	-2226	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
8795	chr1	42928871	42929450	+	0	NA	intron (NM_006516, intron 7 of 9)	intron (NM_006516, intron 7 of 9)	29708	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
237056	chrX	103376301	103377050	+	0	NA	promoter-TSS (NM_014380)	promoter-TSS (NM_014380)	137	NM_206917	27018		NM_014380	ENSG00000166681	BEX3	Bex|DXS6984E|HGR74|NADE|NGFRAP1	brain expressed X-linked 3	protein-coding
221083	chr8	117328971	117329350	+	0	NA	Intergenic	Intergenic	-191553	NM_001282986	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
238969	chrX	155279751	155280050	+	0	NA	intron (NM_001289, intron 4 of 5)	intron (NM_001289, intron 4 of 5)	-15409	NM_171998	116442		NM_171998	ENSG00000155961	RAB39B	BGMR|MRX72|WSMN|WSN|XLID72	RAB39B, member RAS oncogene family	protein-coding
108967	chr18	79528301	79529130	+	0	NA	3' UTR (NM_001278672, exon 9 of 9)	3' UTR (NM_001278672, exon 9 of 9)	-50567	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
224603	chr9	20382621	20382880	+	0	NA	intron (NM_001286691, intron 5 of 10)	intron (NM_001286691, intron 5 of 10)	28488	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
88316	chr16	84196801	84197000	+	0	NA	non-coding (NR_147175, exon 1 of 5)	non-coding (NR_147175, exon 1 of 5)	153	NR_147175	654780		NM_001039504	ENSG00000250685	LOC654780	SFPQ	splicing factor proline/glutamine-rich	ncRNA
42227	chr11	68047951	68048050	+	0	NA	intron (NM_001351059, intron 12 of 18)	intron (NM_001351059, intron 12 of 18)	3206	NR_106811	102465451		NR_106811	ENSG00000275022	MIR6753	hsa-mir-6753	microRNA 6753	ncRNA
148326	chr20	63753601	63754230	+	0	NA	intron (NM_025224, intron 3 of 4)	intron (NM_025224, intron 3 of 4)	14139	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
113307	chr19	8568621	8570340	+	0	NA	intron (NM_012335, intron 1 of 27)	intron (NM_012335, intron 1 of 27)	7962	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
215677	chr8	733401	733880	+	0	NA	Intergenic	Intergenic	-2416	NM_001303100	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
236320	chrX	68830971	68831130	+	0	NA	intron (NM_004429, intron 1 of 4)	intron (NM_004429, intron 1 of 4)	2029	NM_004429	1947		NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
37968	chr11	34692271	34692530	+	0	NA	Intergenic	L1PA2|LINE|L1	50028	NM_001378046	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
24100	chr1	235422821	235423630	+	0	NA	intron (NM_001287801, intron 5 of 17).2	intron (NM_001287801, intron 5 of 17).2	55798	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
41550	chr11	66307551	66308050	+	0	NA	Intergenic	Intergenic	9244	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
194385	chr6	32990321	32990580	+	0	NA	Intergenic	AluSp|SINE|Alu	17366	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
48629	chr12	10384721	10385880	+	0	NA	intron (NR_120430, intron 3 of 3)	L1MA5|LINE|L1	4741	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
224953	chr9	33043701	33044860	+	0	NA	3' UTR (NM_018225, exon 12 of 12)	3' UTR (NM_018225, exon 12 of 12)	19007	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
25783	chr10	11161801	11162000	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-2981	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
72489	chr15	32621471	32621700	+	0	NA	intron (NM_199357, intron 2 of 10)	AluY|SINE|Alu	6081	NM_001286480	9824		NM_014783	ENSG00000198826	ARHGAP11A	GAP (1-12)	Rho GTPase activating protein 11A	protein-coding
228013	chr9	95724371	95725800	+	0	NA	Intergenic	MLT2E|LTR|ERVL	-150606	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
192506	chr6	25007201	25008150	+	0	NA	intron (NM_001286446, intron 1 of 13)	L2|LINE|L2	34613	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
24468	chr1	244046901	244049100	+	0	NA	promoter-TSS (NM_001278196)	promoter-TSS (NM_001278196)	-939	NM_001278196	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
186915	chr5	139592071	139592430	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	30911	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
168119	chr3	138830521	138830780	+	0	NA	intron (NM_006219, intron 1 of 23)	AluY|SINE|Alu	4278	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
194831	chr6	34392001	34393680	+	0	NA	promoter-TSS (NM_006703)	promoter-TSS (NM_006703)	-171	NM_006703	11165		NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
235773	chrX	49072251	49072700	+	0	NA	exon (NM_007213, exon 2 of 3)	exon (NM_007213, exon 2 of 3)	1527	NM_007213	11230		NM_007213	ENSG00000243279	PRAF2	JM4|Yip6a	PRA1 domain family member 2	protein-coding
167789	chr3	133475051	133475750	+	0	NA	TTS (NM_003571)	TTS (NM_003571)	15746	NR_135277	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
195390	chr6	36757321	36758100	+	0	NA	promoter-TSS (NM_001314020)	promoter-TSS (NM_001314020)	-301	NM_001314018	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
117256	chr19	19448951	19449050	+	0	NA	intron (NM_001384516, intron 2 of 12)	intron (NM_001384516, intron 2 of 12)	13937	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
188626	chr5	157210551	157211750	+	0	NA	intron (NM_005546, intron 2 of 16)	intron (NM_005546, intron 2 of 16)	30310	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
2356	chr1	9282671	9282850	+	0	NA	Intergenic	Intergenic	-10134	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
97171	chr17	42660101	42660400	+	0	NA	exon (NM_016437, exon 3 of 11)	exon (NM_016437, exon 3 of 11)	966	NM_016437	27175		NM_016437	ENSG00000037042	TUBG2	-	tubulin gamma 2	protein-coding
28438	chr10	48605071	48605230	+	0	NA	promoter-TSS (NM_001347737)	promoter-TSS (NM_001347737)	-19	NM_001347737	58504		NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
182844	chr5	69365421	69365680	+	0	NA	exon (NM_003187, exon 3 of 3)	exon (NM_003187, exon 3 of 3)	-3747	NM_133343	5884		NM_002873	ENSG00000152942	RAD17	CCYC|HRAD17|R24L|RAD17SP|RAD24	RAD17 checkpoint clamp loader component	protein-coding
194516	chr6	33294951	33295930	+	0	NA	intron (NM_004761, intron 7 of 17)	intron (NM_004761, intron 7 of 17)	3502	NM_004761	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
221761	chr8	127801251	127801350	+	0	NA	intron (NR_003367, intron 1 of 8)	AluSz|SINE|Alu	5338	NR_031609	100302185		NR_031609	ENSG00000283710	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
197569	chr6	79698221	79698480	+	0	NA	intron (NM_031469, intron 3 of 3)	intron (NM_031469, intron 3 of 3)	67021	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
29691	chr10	72053351	72053850	+	0	NA	Intergenic	Intergenic	34951	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
177387	chr4	112172171	112172530	+	0	NA	intron (NM_152400, intron 1 of 1)	intron (NM_152400, intron 1 of 1)	26896	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
143439	chr20	30285921	30286280	+	0	NA	intron (NR_145432, intron 1 of 1)	GA-rich|Low_complexity|Low_complexity	437	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
215721	chr8	1745151	1746880	+	0	NA	Intergenic	Intergenic	17319	NR_134302	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
52479	chr12	55971571	55971930	+	0	NA	3' UTR (NM_001798, exon 7 of 7)	3' UTR (NM_001798, exon 7 of 7)	-2163	NM_001252036	5869		NM_002868	ENSG00000111540	RAB5B	-	RAB5B, member RAS oncogene family	protein-coding
175697	chr4	77072121	77072900	+	0	NA	intron (NM_006835, intron 1 of 6)	AluJr|SINE|Alu	2400	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
12064	chr1	98794221	98794680	+	0	NA	Intergenic	Intergenic	132729	NR_033716	51375		NM_015976	ENSG00000162627	SNX7	-	sorting nexin 7	protein-coding
221490	chr8	124498521	124498780	+	0	NA	intron (NM_032026, intron 9 of 11)	intron (NM_032026, intron 9 of 11)	9926	NR_106903	102466200		NR_106903	ENSG00000284087	MIR6844	hsa-mir-6844	microRNA 6844	ncRNA
141525	chr2	241257471	241258100	+	0	NA	intron (NM_005336, intron 5 of 27)	L1MC5|LINE|L1	14180	NM_001320966	3069		NM_005336	ENSG00000115677	HDLBP	HBP|PRO2900|VGL	high density lipoprotein binding protein	protein-coding
82656	chr16	19502621	19503150	+	0	NA	non-coding (NR_136689, exon 6 of 6)	non-coding (NR_136689, exon 6 of 6)	19213	NM_016641	51573		NM_016641	ENSG00000006007	GDE1	363E6.2|MIR16	glycerophosphodiester phosphodiesterase 1	protein-coding
222613	chr8	141038271	141039230	+	0	NA	Intergenic	Intergenic	-36671	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
85798	chr16	56960571	56961130	+	0	NA	Intergenic	Intergenic	-1100	NM_001286085	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
197680	chr6	85595451	85595550	+	0	NA	Intergenic	Intergenic	-1344	NM_001350536	57231		NM_020468	ENSG00000135317	SNX14	RGS-PX2|SCAR20	sorting nexin 14	protein-coding
38363	chr11	44609101	44610050	+	0	NA	intron (NM_002231, intron 6 of 9)	intron (NM_002231, intron 6 of 9)	43912	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
97878	chr17	45055351	45056100	+	0	NA	intron (NM_001288654, intron 1 of 4)	intron (NM_001288654, intron 1 of 4)	-4093	NM_001288655	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
158457	chr22	50639871	50640030	+	0	NA	Intergenic	LTR49|LTR|ERV1	-11798	NM_001085427	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
169419	chr3	161222201	161222400	+	0	NA	intron (NM_001320227, intron 2 of 16)	MER3|DNA|hAT-Charlie	989	NM_015938	51068		NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
133031	chr2	111944201	111944880	+	0	NA	intron (NM_006343, intron 2 of 18)	MLT2D|LTR|ERVL	45933	NM_006343	10461		NM_006343	ENSG00000153208	MERTK	MER|RP38|Tyro12|c-Eyk|c-mer	MER proto-oncogene, tyrosine kinase	protein-coding
132662	chr2	108747801	108748900	+	0	NA	intron (NM_006267, intron 8 of 28)	AluY|SINE|Alu	28868	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
6558	chr1	28666751	28667530	+	0	NA	Intergenic	AluY|SINE|Alu	-1644	NM_024482	10691		NM_006582	ENSG00000162419	GMEB1	P96PIF|PIF96	glucocorticoid modulatory element binding protein 1	protein-coding
81232	chr16	4549651	4549750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6790	NM_001145011	342346		NM_001145011	ENSG00000205832	C16orf96	-	chromosome 16 open reading frame 96	protein-coding
104078	chr17	80247621	80247950	+	0	NA	intron (NM_001166348, intron 12 of 16)	intron (NM_001166348, intron 12 of 16)	-13067	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
218262	chr8	42181171	42181330	+	0	NA	intron (NM_033011, intron 8 of 12)	intron (NM_033011, intron 8 of 12)	26315	NM_000930	5327		NM_000930	ENSG00000104368	PLAT	T-PA|TPA	plasminogen activator, tissue type	protein-coding
133304	chr2	113679521	113679780	+	0	NA	Intergenic	Intergenic	41718	NR_039943	100616208		NR_039943	ENSG00000265429	MIR4782	-	microRNA 4782	ncRNA
128504	chr2	60083821	60084080	+	0	NA	Intergenic	L1PA2|LINE|L1	299086	NR_132991	106660609		NR_132991	ENSG00000228590	MIR4432HG	-	MIR4432 host gene	ncRNA
208050	chr7	56048701	56049630	+	0	NA	intron (NM_001370518, intron 1 of 10)	AluY|SINE|Alu	2279	NM_001370506	5723		NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
235674	chrX	48597321	48598980	+	0	NA	5' UTR (NM_001166426, exon 1 of 8)	5' UTR (NM_001166426, exon 1 of 8)	658	NM_017883	64743		NM_017883	ENSG00000101940	WDR13	MG21	WD repeat domain 13	protein-coding
118551	chr19	36127551	36128850	+	0	NA	Intergenic	CpG	-11866	NM_001003962	826		NM_001749	ENSG00000126247	CAPNS1	CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1|PPH6	calpain small subunit 1	protein-coding
204910	chr7	6157821	6158080	+	0	NA	TTS (NM_001365764)	TTS (NM_001365764)	14187	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
179842	chr5	487571	488130	+	0	NA	intron (NM_001284351, intron 3 of 16)	AluSx|SINE|Alu	14614	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
4587	chr1	22074521	22075100	+	0	NA	intron (NM_001039802, intron 2 of 6)	LTR54|LTR|ERV1	22101	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
225923	chr9	40507051	40507380	+	0	NA	intron (NR_136300, intron 3 of 3)	intron (NR_136300, intron 3 of 3)	7234	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
98593	chr17	47740601	47742120	+	0	NA	intron (NM_013351, intron 1 of 5)	(TGGTGG)n|Simple_repeat|Simple_repeat	8124	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
13809	chr1	117609521	117610650	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	4037	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
81454	chr16	8884821	8885430	+	0	NA	Intergenic	Intergenic	-16113	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
222714	chr8	141312871	141313230	+	0	NA	Intergenic	Intergenic	-4762	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
211963	chr7	112764221	112764550	+	0	NA	non-coding (NR_109840, exon 4 of 4)	non-coding (NR_109840, exon 4 of 4)	26008	NM_022484	64418		NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
66967	chr14	65950451	65950550	+	0	NA	Intergenic	Intergenic	479398	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
17827	chr1	159898601	159899000	+	0	NA	intron (NM_012337, intron 1 of 11)	intron (NM_012337, intron 1 of 11)	1279	NR_130464	100422852		NR_130464	ENSG00000266458	MIR4259	-	microRNA 4259	ncRNA
91285	chr17	4142021	4143300	+	0	NA	promoter-TSS (NM_001254756)	promoter-TSS (NM_001254756)	370	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
47004	chr12	187621	188200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-15735	NR_120475	101929384		NR_120475	ENSG00000256577	SLC6A12-AS1	-	SLC6A12 antisense RNA 1	ncRNA
50882	chr12	49202071	49202530	+	0	NA	Intergenic	Intergenic	-12976	NM_001270400	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
167617	chr3	129580401	129580600	+	0	NA	intron (NM_015103, intron 8 of 35)	intron (NM_015103, intron 8 of 35)	26176	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
86140	chr16	57690971	57691130	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-3756	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
170700	chr3	187917371	187917800	+	0	NA	Intergenic	Intergenic	58822	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
89510	chr16	89165051	89165850	+	0	NA	promoter-TSS (NR_046200)	promoter-TSS (NR_046200)	-933	NR_046200	400558		NR_046200	ENSG00000205015	LINC02138	-	long intergenic non-protein coding RNA 2138	ncRNA
44940	chr11	116777271	116778280	+	0	NA	3' UTR (NM_003904, exon 14 of 14)	3' UTR (NM_003904, exon 14 of 14)	-4777	NM_001159736	84811		NM_032725	ENSG00000137656	BUD13	Cwc26|fSAP71	BUD13 homolog	protein-coding
161265	chr3	39269521	39270300	+	0	NA	intron (NM_001171174, intron 1 of 1)	intron (NM_001171174, intron 1 of 1)	10126	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
104934	chr17	81930651	81931350	+	0	NA	TTS (NR_015454)	TTS (NR_015454)	3171	NR_015454	92659		NR_015454	ENSG00000265688	MILIP	MAFG-AS1|MAFG-DT	MYC inducible lncRNA inactivating p53	ncRNA
59043	chr13	20497001	20497880	+	0	NA	intron (NM_015974, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	28417	NM_015974	51084		NM_015974	ENSG00000165475	CRYL1	GDH|HEL30|gul3DH|lambda-CRY	crystallin lambda 1	protein-coding
172183	chr4	1237901	1238500	+	0	NA	exon (NM_001377190, exon 3 of 10)	exon (NM_001377190, exon 3 of 10)	10528	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
26867	chr10	24929121	24929380	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	23356	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
18421	chr1	161453251	161453850	+	0	NA	Intergenic	CpG	-51907	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
4885	chr1	23788501	23788980	+	0	NA	TTS (NM_020362)	TTS (NM_020362)	-2405	NM_007260	11313		NM_007260	ENSG00000011009	LYPLA2	APT-2|APT2|DJ886K2.4	lysophospholipase 2	protein-coding
145151	chr20	38835021	38835280	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	29453	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
216574	chr8	21938321	21938800	+	0	NA	intron (NM_001362802, intron 1 of 26)	Charlie29a|DNA|hAT-Charlie	18898	NM_001362802	23039		NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
120860	chr19	45528851	45528950	+	0	NA	3' UTR (NM_001017989, exon 2 of 2)	3' UTR (NM_001017989, exon 2 of 2)	21421	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
14013	chr1	120722351	120722780	+	0	NA	Intergenic	L2c|LINE|L2	-1374	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
207857	chr7	50357651	50357750	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	38652	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
34155	chr10	128066121	128066380	+	0	NA	intron (NM_001323354, intron 10 of 19)	intron (NM_001323354, intron 10 of 19)	-3825	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
164800	chr3	69425271	69425480	+	0	NA	Intergenic	Intergenic	-39287	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
137859	chr2	200824521	200825380	+	0	NA	3' UTR (NM_001321693, exon 11 of 11)	3' UTR (NM_001321693, exon 11 of 11)	12564	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
471	chr1	1151271	1151430	+	0	NA	Intergenic	Intergenic	14333	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
233752	chrX	1388821	1389930	+	0	NA	exon (NM_001636, exon 2 of 4)	exon (NM_001636, exon 2 of 4)	2738	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
155150	chr22	37668351	37668700	+	0	NA	Intergenic	AluSx|SINE|Alu	-7111	NM_002305	3956		NM_002305	ENSG00000100097	LGALS1	GAL1|GBP	galectin 1	protein-coding
71874	chr15	22390321	22390930	+	0	NA	Intergenic	Intergenic	47401	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
234232	chrX	13025621	13026380	+	0	NA	Intergenic	Intergenic	18620	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
165094	chr3	71495851	71496780	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	45774	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
122730	chr19	50027501	50028100	+	0	NA	intron (NM_001308424, intron 1 of 3)	AluSx|SINE|Alu	1795	NM_015428	25888		NM_015428	ENSG00000142528	ZNF473	ZFP100|ZN473	zinc finger protein 473	protein-coding
213583	chr7	139369451	139369830	+	0	NA	intron (NM_016019, intron 1 of 9)	intron (NM_016019, intron 1 of 9)	9746	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
68526	chr14	89026821	89027900	+	0	NA	Intergenic	CpG	202709	NM_001366535	123016		NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
40040	chr11	62704101	62704550	+	0	NA	intron (NR_037948, intron 3 of 11)	AluY|SINE|Alu	1990	NM_001130702	26580		NM_032667	ENSG00000168000	BSCL2	GNG3LG|HMN5|HMN5C|HMND13|PELD|SPG17	BSCL2 lipid droplet biogenesis associated, seipin	protein-coding
27137	chr10	28295521	28295780	+	0	NA	intron (NM_001318170, intron 1 of 16)	intron (NM_001318170, intron 1 of 16)	-6300	NR_107053	102465880		NR_107053	ENSG00000275036	MIR8086	hsa-mir-8086	microRNA 8086	ncRNA
119176	chr19	39419601	39420000	+	0	NA	intron (NM_022835, intron 11 of 18)	AluY|SINE|Alu	6021	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
2165	chr1	8429021	8429480	+	0	NA	intron (NR_125999, intron 2 of 3)	intron (NR_125999, intron 2 of 3)	4605	NR_125999	102724552		NR_125999		RERE-AS1	-	RERE antisense RNA 1	ncRNA
219670	chr8	80506471	80506630	+	0	NA	intron (NM_023929, intron 2 of 6)	AluSp|SINE|Alu	20324	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
84247	chr16	30004571	30004980	+	0	NA	TTS (NM_001282068)	TTS (NM_001282068)	6252	NM_003586	8448		NM_003586	ENSG00000149927	DOC2A	Doc2	double C2 domain alpha	protein-coding
65503	chr14	51887751	51888350	+	0	NA	intron (NM_053064, intron 2 of 3)	L1MA10|LINE|L1	27438	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
39769	chr11	61906351	61906650	+	0	NA	exon (NM_013401, exon 5 of 10)	exon (NM_013401, exon 5 of 10)	11066	NM_013401	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
10913	chr1	83905301	83905550	+	0	NA	intron (NM_001350215, intron 16 of 19)	intron (NM_001350215, intron 16 of 19)	-44429	NR_119375	101927587		NR_119375	ENSG00000233008	LINC01725	-	long intergenic non-protein coding RNA 1725	ncRNA
43194	chr11	75413001	75413350	+	0	NA	intron (NM_001256802, intron 6 of 6)	intron (NM_001256802, intron 6 of 6)	8754	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
39538	chr11	61106001	61106400	+	0	NA	intron (NM_014207, intron 1 of 10)	L2a|LINE|L2	3711	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
141847	chr20	538621	538880	+	0	NA	intron (NM_177559, intron 1 of 13)	intron (NM_177559, intron 1 of 13)	5040	NM_001895	1457		NM_001895	ENSG00000101266	CSNK2A1	CK2A1|CKII|Cka1|Cka2|OCNDS	casein kinase 2 alpha 1	protein-coding
103203	chr17	77470121	77470500	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	-5325	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
177014	chr4	106317971	106318130	+	0	NA	intron (NM_001142416, intron 1 of 6)	intron (NM_001142416, intron 1 of 6)	-1367	NM_001163436	93627		NM_033115	ENSG00000145348	TBCK	FERRY1|Fy-1|HSPC302|IHPRF3|TBCKL	TBC1 domain containing kinase	protein-coding
80555	chr16	2823501	2823900	+	0	NA	Intergenic	Intergenic	6463	NM_144956	10942		NM_006799	ENSG00000007038	PRSS21	ESP-1|ESP1|TEST1|TESTISIN	serine protease 21	protein-coding
111362	chr19	3690421	3691250	+	0	NA	intron (NM_001300849, intron 1 of 16)	intron (NM_001300849, intron 1 of 16)	9633	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
125322	chr2	10775371	10775730	+	0	NA	intron (NM_144583, intron 10 of 12)	intron (NM_144583, intron 10 of 12)	37235	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
9223	chr1	45688001	45689050	+	0	NA	intron (NM_016486, intron 1 of 2)	intron (NM_016486, intron 1 of 2)	344	NM_016486	51249		NM_016486	ENSG00000159596	TMEM69	C1orf154	transmembrane protein 69	protein-coding
128165	chr2	48713551	48713850	+	0	NA	intron (NM_000233, intron 7 of 10)	intron (NM_000233, intron 7 of 10)	42024	NM_000233	3973		NM_000233	ENSG00000138039	LHCGR	HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5	luteinizing hormone/choriogonadotropin receptor	protein-coding
113815	chr19	10596651	10597300	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5480	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
83162	chr16	23464351	23464450	+	0	NA	3' UTR (NM_015044, exon 17 of 17)	3' UTR (NM_015044, exon 17 of 17)	-11211	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
153895	chr22	30297221	30297480	+	0	NA	intron (NM_031937, intron 3 of 8)	intron (NM_031937, intron 3 of 8)	-7845	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
63051	chr13	113108451	113109150	+	0	NA	intron (NM_000131, intron 2 of 8)	CpG	3009	NM_019616	2155		NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
88298	chr16	84089671	84089830	+	0	NA	intron (NM_003791, intron 8 of 22)	intron (NM_003791, intron 8 of 22)	27192	NM_003791	8720		NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SEDKF|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
32740	chr10	104309971	104310450	+	0	NA	3' UTR (NM_001272013, exon 2 of 2)	3' UTR (NM_001272013, exon 2 of 2)	-13154	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
4355	chr1	20664201	20664400	+	0	NA	3' UTR (NM_001287212, exon 15 of 15)	3' UTR (NM_001287212, exon 15 of 15)	-2931	NM_005216	1650		NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein-coding
151875	chr22	18730101	18730700	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-3535	NR_165635	642643		NR_136561	ENSG00000182824	FAM230E	LINC01662	family with sequence similarity 230 member E	ncRNA
190765	chr6	490071	490750	+	0	NA	intron (NM_018303, intron 26 of 27)	intron (NM_018303, intron 26 of 27)	98658	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
91496	chr17	4907601	4907800	+	0	NA	Intergenic	Intergenic	-4602	NM_000080	1145		NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1A1|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|FIM1|FIMG|FIMG1|MGI|SCCMS	cholinergic receptor nicotinic epsilon subunit	protein-coding
165406	chr3	97825771	97825930	+	0	NA	intron (NM_153605, intron 1 of 21)	intron (NM_153605, intron 1 of 21)	3839	NM_153605	131544		NM_153605	ENSG00000080200	CRYBG3	DKFZp667G2110|vlAKAP	crystallin beta-gamma domain containing 3	protein-coding
151340	chr21	45634251	45634550	+	0	NA	Intergenic	CpG	-9325	NM_001382287	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
72983	chr15	40592271	40592430	+	0	NA	Intergenic	AluSz|SINE|Alu	-1899	NM_144508	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
134802	chr2	148020251	148022350	+	0	NA	promoter-TSS (NM_001190879)	promoter-TSS (NM_001190879)	209	NM_001378120	55777		NM_018328	ENSG00000204406	MBD5	C2DELq23.1|DEL2Q23.1|MRD1	methyl-CpG binding domain protein 5	protein-coding
186651	chr5	138569701	138570200	+	0	NA	intron (NM_004134, intron 4 of 16)	AluJb|SINE|Alu	5451	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
160585	chr3	31157151	31157500	+	0	NA	Intergenic	L2b|LINE|L2	4462	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
75664	chr15	67756251	67756550	+	0	NA	intron (NM_145160, intron 19 of 21)	L1MA9|LINE|L1	-69109	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
238427	chrX	150772171	150772530	+	0	NA	intron (NM_001242614, intron 9 of 11)	intron (NM_001242614, intron 9 of 11)	60595	NM_001353996	8776		NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
219124	chr8	66027971	66028730	+	0	NA	intron (NR_146171, intron 1 of 6)	intron (NR_146171, intron 1 of 6)	6797	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
108429	chr18	69955911	69956250	+	0	NA	intron (NM_006566, intron 1 of 6)	intron (NM_006566, intron 1 of 6)	719	NM_001303619	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
157844	chr22	48188351	48188700	+	0	NA	Intergenic	Intergenic	-85839	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	ncRNA
200302	chr6	132824301	132824900	+	0	NA	Intergenic	Intergenic	7381	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
56981	chr12	120552021	120552400	+	0	NA	intron (NM_001330474, intron 2 of 16)	AluSx|SINE|Alu	17854	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
206245	chr7	29194201	29195980	+	0	NA	5' UTR (NM_001348054, exon 1 of 14)	5' UTR (NM_001348054, exon 1 of 14)	177	NM_001371257	54504		NM_019029	ENSG00000106066	CPVL	HVLP	carboxypeptidase vitellogenic like	protein-coding
192835	chr6	27139191	27140250	+	0	NA	TTS (NM_003495)	TTS (NM_003495)	438	NM_003495	8294		NM_003495	ENSG00000276180	H4C9	H4-16|H4/m|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4FM|H4M|HIST1H4I|TEBIVANED4|TEVANED4	H4 clustered histone 9	protein-coding
122366	chr19	49358601	49359000	+	0	NA	intron (NM_001256661, intron 3 of 12)	AluSc5|SINE|Alu	2717	NM_001256661	8463		NM_003598	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain transcription factor 2	protein-coding
74522	chr15	60408351	60408880	+	0	NA	Intergenic	Intergenic	-10629	NM_001136015	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
49132	chr12	14919521	14919780	+	0	NA	intron (NM_001300784, intron 2 of 4)	intron (NM_001300784, intron 2 of 4)	9475	NM_001300784	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
141341	chr2	240579421	240580480	+	0	NA	3' UTR (NM_018226, exon 11 of 11)	3' UTR (NM_018226, exon 11 of 11)	6366	NR_103792	101752400		NR_103792	ENSG00000260942	CAPN10-DT	CAPN10-AS1|locus959	CAPN10 divergent transcript	ncRNA
27339	chr10	30639851	30640200	+	0	NA	Intergenic	L1PB1|LINE|L1	-10272	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
186901	chr5	139575901	139576350	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	14786	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
21492	chr1	205730001	205730450	+	0	NA	intron (NM_022731, intron 1 of 6)	AluJb|SINE|Alu	19957	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
214828	chr7	151248231	151250100	+	0	NA	promoter-TSS (NM_001003801)	promoter-TSS (NM_001003801)	-471	NM_001003801	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
162948	chr3	49551971	49552730	+	0	NA	intron (NR_038866, intron 2 of 2)	intron (NR_038866, intron 2 of 2)	2016	NR_038866	100132677		NR_038866	ENSG00000226913	BSN-DT	BSN-AS2	BSN divergent transcript	ncRNA
63826	chr14	21475571	21475730	+	0	NA	intron (NR_028074, intron 2 of 7)	intron (NR_028074, intron 2 of 7)	1024	NM_001163380	84932		NM_032846	ENSG00000129472	RAB2B	-	RAB2B, member RAS oncogene family	protein-coding
203833	chr7	1425601	1426200	+	0	NA	Intergenic	Intergenic	33570	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
16284	chr1	154157631	154159300	+	0	NA	3' UTR (NM_001043353, exon 8 of 8)	3' UTR (NM_001043353, exon 8 of 8)	-3349	NM_001159484	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
116526	chr19	18175671	18175830	+	0	NA	intron (NM_006332, intron 4 of 6)	intron (NM_006332, intron 4 of 6)	1937	NM_006332	10437		NM_006332	ENSG00000216490	IFI30	GILT|IFI-30|IP-30|IP30	IFI30 lysosomal thiol reductase	protein-coding
40611	chr11	64650551	64651330	+	0	NA	intron (NM_015080, intron 14 of 22)	intron (NM_015080, intron 14 of 22)	-7395	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
195738	chr6	39314451	39314550	+	0	NA	promoter-TSS (NM_031460)	promoter-TSS (NM_031460)	-81	NM_001135111	89822		NM_031460	ENSG00000124780	KCNK17	K2p17.1|TALK-2|TALK2|TASK-4|TASK4	potassium two pore domain channel subfamily K member 17	protein-coding
193002	chr6	28202301	28202700	+	0	NA	Intergenic	Intergenic	16429	NR_002936	222699		NR_002936		TOB2P1	TOB2P|TOB4p|p373c6.3	transducer of ERBB2, 2 pseudogene 1	pseudo
92694	chr17	14019521	14019780	+	0	NA	Intergenic	Intergenic	-4848	NR_003261	94158		NR_003261		CDRT15P1	CDRT15P	CDRT15 pseudogene 1	pseudo
33605	chr10	119538741	119539680	+	0	NA	intron (NM_001005339, intron 1 of 4)	intron (NM_001005339, intron 1 of 4)	-2677	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
6896	chr1	31563971	31564530	+	0	NA	Intergenic	Intergenic	-12235	NM_001204414	64129		NM_022164	ENSG00000142910	TINAGL1	ARG1|LCN7|LIECG3|TINAGRP	tubulointerstitial nephritis antigen like 1	protein-coding
183522	chr5	79640121	79640380	+	0	NA	intron (NM_173797, intron 5 of 15)	AluSz|SINE|Alu	27809	NM_001349554	167153		NM_173797	ENSG00000164329	TENT2	APD4|GLD2|PAPD4|TUT2	terminal nucleotidyltransferase 2	protein-coding
56792	chr12	120199271	120199430	+	0	NA	exon (NM_001002, exon 3 of 8)	exon (NM_001002, exon 3 of 8)	1761	NM_001002	6175		NM_001002	ENSG00000089157	RPLP0	L10E|LP0|P0|PRLP0|RPP0|uL10	ribosomal protein lateral stalk subunit P0	protein-coding
57269	chr12	121623271	121623430	+	0	NA	Intergenic	AluSx|SINE|Alu	-3200	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
127530	chr2	42318121	42318380	+	0	NA	intron (NM_019063, intron 19 of 22)	intron (NM_019063, intron 19 of 22)	41788	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
178207	chr4	142555851	142556350	+	0	NA	intron (NM_003866, intron 2 of 26)	MIR3|SINE|MIR	4655	NM_001385338	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
207351	chr7	44077251	44077350	+	0	NA	intron (NR_104299, intron 5 of 10)	intron (NR_104299, intron 5 of 10)	-3867	NR_106897	102465504		NR_106897	ENSG00000283969	MIR6838	hsa-mir-6838	microRNA 6838	ncRNA
54383	chr12	89862351	89863100	+	0	NA	Intergenic	MIR|SINE|MIR	-84968	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
135626	chr2	168196671	168196830	+	0	NA	intron (NM_013233, intron 1 of 17)	L2a|LINE|L2	50845	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
76556	chr15	75212571	75212930	+	0	NA	TTS (NM_015492)	TTS (NM_015492)	10868	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
46857	chr11	133927071	133928200	+	0	NA	intron (NM_001277285, intron 12 of 19)	intron (NM_001277285, intron 12 of 19)	-29054	NR_039846	100616119		NR_039846	ENSG00000284020	MIR4697	-	microRNA 4697	ncRNA
2886	chr1	11646901	11647250	+	0	NA	Intergenic	Intergenic	-7332	NM_183412	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
7290	chr1	32391751	32392050	+	0	NA	intron (NM_018045, intron 2 of 10)	MIR|SINE|MIR	2541	NM_018045	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
100653	chr17	63699901	63700500	+	0	NA	promoter-TSS (NR_046273)	promoter-TSS (NR_046273)	-75	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
153722	chr22	29297071	29297430	+	0	NA	intron (NM_001163286, intron 11 of 15)	AluSx4|SINE|Alu	-9773	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
235120	chrX	40732421	40732980	+	0	NA	intron (NM_004229, intron 1 of 30)	AluJo|SINE|Alu	2842	NM_004229	9282		NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
149754	chr21	34630601	34631030	+	0	NA	Intergenic	Intergenic	-15702	NM_004414	1827		NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
101556	chr17	68022671	68023180	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-12810	NM_002266	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
124184	chr19	56153501	56153700	+	0	NA	intron (NM_018337, intron 3 of 4)	MIR3|SINE|MIR	12313	NM_001253792	55311		NM_018337	ENSG00000167685	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
79578	chr16	999371	999530	+	0	NA	Intergenic	L2b|LINE|L2	17680	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
207678	chr7	45124101	45124300	+	0	NA	Intergenic	Intergenic	-12453	NM_199122	9238		NM_004749	ENSG00000136270	TBRG4	CPR2|FASTKD4	transforming growth factor beta regulator 4	protein-coding
119092	chr19	39268151	39268600	+	0	NA	promoter-TSS (NM_172138)	promoter-TSS (NM_172138)	-21	NM_172138	282616		NM_172138	ENSG00000183709	IFNL2	IFNL2a|IFNL3a|IL-28A|IL28A	interferon lambda 2	protein-coding
159012	chr3	10444571	10444730	+	0	NA	intron (NM_001353564, intron 3 of 20)	intron (NM_001353564, intron 3 of 20)	-50088	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
139478	chr2	224357271	224357680	+	0	NA	Intergenic	Intergenic	44519	NM_024785	79843		NM_024785	ENSG00000124019	FAM124B	-	family with sequence similarity 124 member B	protein-coding
171231	chr3	195778651	195779700	+	0	NA	exon (NM_018406, exon 2 of 25)	exon (NM_018406, exon 2 of 25)	32754	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
52600	chr12	56217221	56217480	+	0	NA	intron (NM_194359, intron 1 of 6)	AluSx1|SINE|Alu	4351	NM_001242826	10193		NM_005785	ENSG00000181852	RNF41	FLRF|NRDP1|SBBI03	ring finger protein 41	protein-coding
100903	chr17	64412071	64412600	+	0	NA	Intergenic	Intergenic	-21475	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
61423	chr13	51818071	51818550	+	0	NA	intron (NM_001351006, intron 2 of 2)	intron (NM_001351006, intron 2 of 2)	-14147	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
23926	chr1	235082301	235082500	+	0	NA	Intergenic	AluSx|SINE|Alu	-12582	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
20608	chr1	198926921	198927300	+	0	NA	intron (NR_040073, intron 1 of 2)	intron (NR_040073, intron 1 of 2)	10319	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
227514	chr9	91363721	91363980	+	0	NA	Intergenic	MER54A|LTR|ERVL	-1881	NM_001306190	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
31017	chr10	88810201	88811000	+	0	NA	intron (NM_001128215, intron 2 of 8)	intron (NM_001128215, intron 2 of 8)	7870	NM_001128215	340654		NM_001128215	ENSG00000173239	LIPM	LIPL3|bA304I5.1	lipase family member M	protein-coding
233880	chrX	1572071	1572400	+	0	NA	Intergenic	AluSx4|SINE|Alu	-19369	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
45081	chr11	117073751	117074400	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	24353	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
61375	chr13	51442401	51442700	+	0	NA	3' UTR (NM_001039938, exon 3 of 3)	3' UTR (NM_001039938, exon 3 of 3)	10486	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
131443	chr2	96318501	96318700	+	0	NA	Intergenic	L1M6|LINE|L1	-6717	NM_001008949	150771		NM_178495	ENSG00000198885	ITPRIPL1	D1B|KIAA1754L	ITPRIP like 1	protein-coding
41089	chr11	65524201	65526600	+	0	NA	intron (NM_020680, intron 1 of 17)	CpG	317	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
208444	chr7	66894771	66895050	+	0	NA	Intergenic	L2a|LINE|L2	-9210	NR_136637	644794		NR_136637		LINC02604	lncHERG	long intergenic non-protein coding RNA 2604	ncRNA
119149	chr19	39384451	39384550	+	0	NA	non-coding (NR_169271, exon 13 of 13)	non-coding (NR_169271, exon 13 of 13)	6606	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
192769	chr6	26483951	26484050	+	0	NA	Intergenic	L1M4|LINE|L1	-1491	NR_038992	285819		NR_038992		LOC285819	-	uncharacterized LOC285819	ncRNA
104162	chr17	80397871	80398030	+	0	NA	3' UTR (NM_001256071, exon 68 of 68)	3' UTR (NM_001256071, exon 68 of 68)	-17217	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
53745	chr12	68645251	68645650	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	-18075	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
12998	chr1	111032401	111032680	+	0	NA	Intergenic	Intergenic	-68596	NM_001006945	55791		NM_018372	ENSG00000121931	LRIF1	C1orf103|FSHD3|HBiX1|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
177881	chr4	128811901	128813600	+	0	NA	intron (NM_001287443, intron 1 of 10)	CpG	906	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
31834	chr10	99564421	99564680	+	0	NA	Intergenic	MIRc|SINE|MIR	31608	NM_145285	159296		NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
219999	chr8	89995251	89995800	+	0	NA	Intergenic	MIR|SINE|MIR	-5827	NM_001330575	1666		NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	2,4-dienoyl-CoA reductase 1	protein-coding
129888	chr2	73172851	73173500	+	0	NA	Intergenic	Intergenic	-29399	NM_001134462	344022		NM_001134462	ENSG00000214513	NOTO	-	notochord homeobox	protein-coding
149653	chr21	33551671	33551830	+	0	NA	non-coding (NR_103797, exon 3 of 13)	non-coding (NR_103797, exon 3 of 13)	1088	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
4166	chr1	19390501	19392060	+	0	NA	intron (NM_001313932, intron 2 of 4)	intron (NM_001313932, intron 2 of 4)	78954	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
164214	chr3	56914471	56915200	+	0	NA	intron (NM_001377407, intron 3 of 12)	L1MB3|LINE|L1	1601	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
132916	chr2	111420121	111420380	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	74911	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
194337	chr6	32857051	32857850	+	0	NA	intron (NM_002800, intron 3 of 5)	intron (NM_002800, intron 3 of 5)	3258	NM_002800	5698		NM_002800	ENSG00000240065	PSMB9	LMP2|PRAAS3|PRAAS6|PSMB6i|RING12|beta1i	proteasome 20S subunit beta 9	protein-coding
100754	chr17	63950571	63951480	+	0	NA	intron (NM_000334, intron 14 of 23)	intron (NM_000334, intron 14 of 23)	-18694	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
223470	chr8	144024871	144025030	+	0	NA	intron (NM_198572, intron 1 of 4)	intron (NM_198572, intron 1 of 4)	12670	NM_001134374	375686		NM_198572	ENSG00000186583	SPATC1	SPATA15	spermatogenesis and centriole associated 1	protein-coding
162589	chr3	48684251	48684350	+	0	NA	intron (NM_184231, intron 1 of 12)	intron (NM_184231, intron 1 of 12)	1615	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
93922	chr17	21293521	21294680	+	0	NA	intron (NM_002756, intron 1 of 11)	intron (NM_002756, intron 1 of 11)	6064	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
122398	chr19	49432321	49432950	+	0	NA	exon (NM_020309, exon 9 of 12)	exon (NM_020309, exon 9 of 12)	7247	NM_001195256	100507003		NM_001195256	ENSG00000261949	GFY	Goofy	golgi associated olfactory signaling regulator	protein-coding
210512	chr7	100210721	100212300	+	0	NA	non-coding (NR_028039, exon 7 of 8)	non-coding (NR_028039, exon 7 of 8)	-7738	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
18509	chr1	161767851	161768150	+	0	NA	intron (NM_007348, intron 1 of 15)	AluSp|SINE|Alu	1680	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
93893	chr17	21240951	21241680	+	0	NA	3' UTR (NM_152914, exon 3 of 3)	3' UTR (NM_152914, exon 3 of 3)	12095	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
136025	chr2	172449821	172450280	+	0	NA	intron (NM_001365530, intron 1 of 25)	L2a|LINE|L2	15972	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
190839	chr6	1606451	1606980	+	0	NA	non-coding (NR_125804, exon 2 of 2)	non-coding (NR_125804, exon 2 of 2)	1184	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
149903	chr21	36127451	36128800	+	0	NA	Intergenic	Intergenic	-1485	NR_040084	100133286		NR_040084	ENSG00000230212	CBR1-AS1	-	CBR1 antisense RNA 1	ncRNA
174630	chr4	40311701	40312680	+	0	NA	intron (NR_121641, intron 2 of 3)	intron (NR_121641, intron 2 of 3)	-4294	NR_121640	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
186378	chr5	134927921	134928250	+	0	NA	intron (NM_032151, intron 2 of 3)	intron (NM_032151, intron 2 of 3)	22954	NM_032151	84105		NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
96639	chr17	40602001	40602200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-36628	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
209775	chr7	87317521	87317780	+	0	NA	Intergenic	Intergenic	27842	NR_015381	11257		NM_007233	ENSG00000182165	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1|TP53LC12	TP53 target 1	ncRNA
191106	chr6	4015951	4016680	+	0	NA	Intergenic	L2b|LINE|L2	-4985	NM_003913	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
5430	chr1	25562101	25564150	+	0	NA	exon (NM_015627, exon 6 of 9)	exon (NM_015627, exon 6 of 9)	19519	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
162660	chr3	48905971	48906380	+	0	NA	Intergenic	AluY|SINE|Alu	-7293	NM_000387	788		NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	solute carrier family 25 member 20	protein-coding
153526	chr22	26565151	26565450	+	0	NA	promoter-TSS (NM_001008566)	promoter-TSS (NM_001008566)	41	NM_001008566	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
218584	chr8	55843851	55845150	+	0	NA	Intergenic	Intergenic	-35335	NM_002350	4067		NM_002350	ENSG00000254087	LYN	JTK8|SAIDV|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
40319	chr11	63905271	63905680	+	0	NA	intron (NM_001163297, intron 15 of 15)	intron (NM_001163297, intron 15 of 15)	11689	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
29029	chr10	64042151	64042250	+	0	NA	Intergenic	L1M3e|LINE|L1	-520310	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
30387	chr10	78047101	78047780	+	0	NA	intron (NM_001142285, intron 4 of 4)	intron (NM_001142285, intron 4 of 4)	13577	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
204617	chr7	5369421	5369680	+	0	NA	intron (NM_001080495, intron 11 of 29)	intron (NM_001080495, intron 11 of 29)	53996	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
134619	chr2	144406201	144406800	+	0	NA	intron (NM_001171653, intron 3 of 8)	L2a|LINE|L2	-73431	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
101752	chr17	72540321	72540730	+	0	NA	intron (NR_036488, intron 1 of 3)	CpG	52279	NR_036488	100499467		NR_036488	ENSG00000227036	LINC00673	ERRLR01|HI-LNC75|HILNC75|LUCAIR1|RASON|SLNCR|SLNCR1	long intergenic non-protein coding RNA 673	ncRNA
26668	chr10	22611351	22612780	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	102043	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
237160	chrX	107537771	107538100	+	0	NA	intron (NM_032428, intron 5 of 15)	Tigger17c|DNA|TcMar-Tigger	7886	NR_046750	100874122		NR_046750	ENSG00000227610	FRMPD3-AS1	-	FRMPD3 antisense RNA 1	ncRNA
187208	chr5	140674471	140674980	+	0	NA	exon (NM_001258040, exon 11 of 12)	exon (NM_001258040, exon 11 of 12)	-1149	NM_194249	373863		NM_194249	ENSG00000256453	DND1	RBMS4	DND microRNA-mediated repression inhibitor 1	protein-coding
179432	chr4	184345001	184345200	+	0	NA	intron (NR_040108, intron 2 of 2)	(GGCAGA)n|Simple_repeat|Simple_repeat	8877	NR_040108	728175		NR_040108	ENSG00000180712	LINC02363	-	long intergenic non-protein coding RNA 2363	ncRNA
14196	chr1	123195651	123195750	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1676588	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
68655	chr14	90003921	90004180	+	0	NA	intron (NM_001008744, intron 13 of 15)	intron (NM_001008744, intron 13 of 15)	48123	NM_001008744	55775		NM_018319	ENSG00000042088	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
141868	chr20	667421	667800	+	0	NA	intron (NM_033129, intron 1 of 1)	intron (NM_033129, intron 1 of 1)	8192	NM_033129	85508		NM_033129	ENSG00000215397	SCRT2	ZNF898B	scratch family transcriptional repressor 2	protein-coding
76752	chr15	76654221	76654550	+	0	NA	intron (NR_148227, intron 21 of 32)	AluY|SINE|Alu	67738	NR_037464	100500855		NR_037464	ENSG00000266449	MIR3713	-	microRNA 3713	ncRNA
137666	chr2	197450571	197451480	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-2398	NM_025147	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
175646	chr4	76504901	76505130	+	0	NA	intron (NM_020859, intron 1 of 10)	intron (NM_020859, intron 1 of 10)	-68553	NR_039654	100616299		NR_039654	ENSG00000263445	MIR4450	mir-4450	microRNA 4450	ncRNA
211514	chr7	105301721	105301980	+	0	NA	intron (NM_001350742, intron 2 of 16)	intron (NM_001350742, intron 2 of 16)	-3071	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
83908	chr16	28994071	28994630	+	0	NA	Intergenic	AluSq2|SINE|Alu	9298	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
209466	chr7	76510401	76510800	+	0	NA	promoter-TSS (NM_001347684)	promoter-TSS (NM_001347684)	48	NM_001347684	105375355		NM_030570	ENSG00000243566	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
73533	chr15	43822171	43822830	+	0	NA	intron (NM_005926, intron 1 of 8)	AluSx|SINE|Alu	2190	NM_005926	4236		NM_005926	ENSG00000140259	MFAP1	AMP	microfibril associated protein 1	protein-coding
160053	chr3	18479851	18480150	+	0	NA	intron (NR_125803, intron 4 of 6)	intron (NR_125803, intron 4 of 6)	-34408	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
171423	chr3	196235971	196236130	+	0	NA	3' UTR (NM_001312673, exon 9 of 9)	3' UTR (NM_001312673, exon 9 of 9)	19516	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
220159	chr8	95026901	95027300	+	0	NA	intron (NM_001354517, intron 1 of 7)	intron (NM_001354517, intron 1 of 7)	2111	NR_148914	137682		NM_152416	ENSG00000156170	NDUFAF6	C8orf38|FRTS5|MC1DN17	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein-coding
208007	chr7	55539921	55540180	+	0	NA	intron (NM_001321243, intron 1 of 5)	intron (NM_001321243, intron 1 of 5)	-1383	NM_001284283	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
167910	chr3	136162851	136163200	+	0	NA	intron (NM_018133, intron 1 of 1)	L1MC5|LINE|L1	31443	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
162355	chr3	47837371	47838280	+	0	NA	intron (NM_014966, intron 7 of 22)	intron (NM_014966, intron 7 of 22)	-11730	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
138009	chr2	201267401	201268200	+	0	NA	intron (NM_033355, intron 3 of 9)	intron (NM_033355, intron 3 of 9)	7264	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
119238	chr19	39476051	39476350	+	0	NA	intron (NM_001111020, intron 29 of 29)	intron (NM_001111020, intron 29 of 29)	-4638	NM_001329559	92609		NM_001001563	ENSG00000105197	TIMM50	MGCA9|TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
35853	chr11	2338871	2339030	+	0	NA	intron (NR_108080, intron 1 of 2)	LTR7B|LTR|ERV1	-35810	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
11882	chr1	93156671	93156830	+	0	NA	intron (NM_001167830, intron 2 of 4)	AluJb|SINE|Alu	23663	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
80626	chr16	2979251	2981800	+	0	NA	promoter-TSS (NM_001258451)	promoter-TSS (NM_001258451)	-79	NM_001258451	9088		NM_004203	ENSG00000127564	PKMYT1	MYT1|PPP1R126	protein kinase, membrane associated tyrosine/threonine 1	protein-coding
63447	chr13	114116721	114117150	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	15688	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
226321	chr9	69027321	69028050	+	0	NA	Intergenic	LTR37B|LTR|ERV1	-8067	NM_000144	2395		NM_000144	ENSG00000165060	FXN	CyaY|FA|FARR|FRDA|X25	frataxin	protein-coding
118928	chr19	38742051	38742350	+	0	NA	intron (NM_144691, intron 3 of 20)	AluSg7|SINE|Alu	2274	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
238652	chrX	154002021	154003100	+	0	NA	Intergenic	Intergenic	17342	NM_001025242	3654		NM_001569	ENSG00000184216	IRAK1	IRAK|pelle	interleukin 1 receptor associated kinase 1	protein-coding
194441	chr6	33163671	33164480	+	0	NA	intron (NM_080680, intron 65 of 65).6	intron (NM_080680, intron 65 of 65).6	20751	NR_138084	414768		NR_138084		HCG24	-	HLA complex group 24	ncRNA
112252	chr19	5783151	5784700	+	0	NA	exon (NM_001134316, exon 3 of 3)	exon (NM_001134316, exon 3 of 3)	821	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
8801	chr1	42934751	42934850	+	0	NA	intron (NM_006516, intron 2 of 9)	intron (NM_006516, intron 2 of 9)	24068	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
62488	chr13	99413401	99414080	+	0	NA	Intergenic	Intergenic	57609	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
108204	chr18	63135571	63135930	+	0	NA	intron (NM_000633, intron 2 of 2)	L2c|LINE|L2	184019	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
182434	chr5	62268521	62269150	+	0	NA	Intergenic	Intergenic	-37327	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
158400	chr22	50519871	50520030	+	0	NA	TTS (NM_014551)	TTS (NM_014551)	5648	NM_005138	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
71364	chr14	105485411	105486400	+	0	NA	promoter-TSS (NM_001311)	promoter-TSS (NM_001311)	-981	NM_001311	1396		NM_001311	ENSG00000213145	CRIP1	CRHP|CRIP|CRP-1|CRP1	cysteine rich protein 1	protein-coding
143849	chr20	32528451	32529780	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	19156	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
44442	chr11	104798721	104799700	+	0	NA	Intergenic	Intergenic	99460	NR_034065	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
212561	chr7	128883621	128885130	+	0	NA	intron (NM_001366122, intron 28 of 39)	intron (NM_001366122, intron 28 of 39)	18045	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
102060	chr17	74906321	74906580	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-12817	NM_178128	283985		NM_178128	ENSG00000172782	FADS6	FP18279	fatty acid desaturase 6	protein-coding
231203	chr9	129943701	129943930	+	0	NA	intron (NM_001363755, intron 6 of 15)	AluY|SINE|Alu	74210	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
175990	chr4	81648571	81649280	+	0	NA	Intergenic	Intergenic	-177018	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
238902	chrX	154630901	154631700	+	0	NA	Intergenic	L1M6|LINE|L1	1882	NR_027401	100132967		NR_027401	ENSG00000279245	FAM223A	CXorf52|LINC00204A|NCRNA00204|NCRNA00204A|SPCX	family with sequence similarity 223 member A	ncRNA
26377	chr10	16787151	16788530	+	0	NA	intron (NM_152724, intron 1 of 7)	THE1B|LTR|ERVL-MaLR	29584	NM_012425	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
210716	chr7	100601901	100602750	+	0	NA	promoter-TSS (NM_002593)	promoter-TSS (NM_002593)	-38	NM_002593	5118		NM_002593	ENSG00000106333	PCOLCE	PCPE|PCPE-1|PCPE1	procollagen C-endopeptidase enhancer	protein-coding
148401	chr20	63936151	63936450	+	0	NA	TTS (NM_025219)	TTS (NM_025219)	5244	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
173161	chr4	6686971	6687600	+	0	NA	TTS (NR_147207)	TTS (NR_147207)	3234	NR_147207	339988		NR_147207	ENSG00000246526	LINC02481	LINC002481	long intergenic non-protein coding RNA 2481	ncRNA
65222	chr14	49806351	49806450	+	0	NA	intron (NM_001301732, intron 17 of 31)	AluSg7|SINE|Alu	38247	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
134787	chr2	147841001	147841200	+	0	NA	Intergenic	Intergenic	-3417	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
204789	chr7	5620471	5620830	+	0	NA	3' UTR (NM_001377156, exon 18 of 18)	3' UTR (NM_001377156, exon 18 of 18)	27834	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
197987	chr6	90049301	90049600	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	154981	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
27631	chr10	32947901	32948050	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	9919	NM_133376	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
176045	chr4	82377421	82377900	+	0	NA	Intergenic	AluJr|SINE|Alu	-3664	NM_031369	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
235218	chrX	41366221	41367200	+	0	NA	Intergenic	AluSz|SINE|Alu	32544	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
97924	chr17	45149841	45150500	+	0	NA	exon (NM_006460, exon 1 of 1)	exon (NM_006460, exon 1 of 1)	1695	NM_006460	10614		NM_006460	ENSG00000186834	HEXIM1	CLP1|EDG1|HIS1|MAQ1	HEXIM P-TEFb complex subunit 1	protein-coding
89845	chr16	89592921	89593180	+	0	NA	intron (NM_153636, intron 13 of 14)	AluSq2|SINE|Alu	17292	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
169820	chr3	177132221	177132880	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	63928	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
172458	chr4	2006401	2007600	+	0	NA	intron (NM_005663, intron 1 of 10)	AluJb|SINE|Alu	1974	NM_005663	7469		NM_005663	ENSG00000185049	NELFA	NELF-A|P/OKcl.15|WHSC2	negative elongation factor complex member A	protein-coding
219977	chr8	89790121	89790780	+	0	NA	3' UTR (NM_003821, exon 11 of 11)	3' UTR (NM_003821, exon 11 of 11)	32634	NM_003821	8767		NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor interacting serine/threonine kinase 2	protein-coding
25293	chr10	6176671	6177030	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-24588	NR_039698	100628560		NR_039698	ENSG00000283634	MIR3155B	hsa-mir-3155b	microRNA 3155b	ncRNA
37598	chr11	19723351	19724350	+	0	NA	intron (NM_145117, intron 1 of 37)	intron (NM_145117, intron 1 of 37)	-9178	NR_015384	100126784		NR_015384		LEISA1	LEISA|NAV2-AS6	lncRNA enhancing IL-6/STAT3 signaling activation 1	ncRNA
36454	chr11	5693621	5693980	+	0	NA	intron (NM_006074, intron 1 of 7)	MLT1C|LTR|ERVL-MaLR	4010	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
567	chr1	1260951	1261650	+	0	NA	intron (NM_194457, intron 2 of 5)	intron (NM_194457, intron 2 of 5)	12554	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
4536	chr1	21939671	21939830	+	0	NA	Intergenic	Intergenic	-2440	NM_001291860	3339		NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
31140	chr10	89703371	89704050	+	0	NA	intron (NR_168375, intron 1 of 30)	LTR55|LTR|ERVL?	2120	NM_001284259	9585		NM_016195	ENSG00000138182	KIF20B	CT90|KRMP1|MPHOSPH1|MPP-1|MPP1	kinesin family member 20B	protein-coding
236708	chrX	77895161	77895950	+	0	NA	promoter-TSS (NM_001367916)	promoter-TSS (NM_001367916)	13	NM_032121	84061		NM_032121	ENSG00000102158	MAGT1	CDG1CC|IAP|MRX95|OST3B|PRO0756|SLC58A1|XMEN|bA217H1.1	magnesium transporter 1	protein-coding
51913	chr12	53680001	53680400	+	0	NA	Intergenic	AluJb|SINE|Alu	-3870	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
97677	chr17	44248851	44249730	+	0	NA	3' UTR (NM_000342, exon 20 of 20)	3' UTR (NM_000342, exon 20 of 20)	18845	NM_000342	6521		NM_000342	ENSG00000004939	SLC4A1	AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR	solute carrier family 4 member 1 (Diego blood group)	protein-coding
214	chr1	821901	822300	+	0	NA	Intergenic	Intergenic	4729	NR_103536	400728		NM_207464	ENSG00000177757	FAM87B	-	family with sequence similarity 87 member B	ncRNA
141437	chr2	241008671	241008830	+	0	NA	intron (NM_001080437, intron 1 of 31)	intron (NM_001080437, intron 1 of 31)	10132	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
29197	chr10	68978271	68978430	+	0	NA	intron (NM_004728, intron 12 of 14)	L1MB7|LINE|L1	-10453	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
90033	chr16	89902551	89903330	+	0	NA	intron (NM_014972, intron 12 of 17)	intron (NM_014972, intron 12 of 17)	-15922	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
22345	chr1	214599071	214599230	+	0	NA	Intergenic	AluY|SINE|Alu	-4045	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
78180	chr15	90543871	90544230	+	0	NA	intron (NM_001042574, intron 2 of 14)	MLT1C|LTR|ERVL-MaLR	14127	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
58710	chr12	132569071	132569980	+	0	NA	intron (NM_001382740, intron 6 of 11)	intron (NM_001382740, intron 6 of 11)	-12472	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
96331	chr17	40029051	40029150	+	0	NA	intron (NM_014815, intron 13 of 25)	intron (NM_014815, intron 13 of 25)	-1455	NR_102369	101340251		NR_102369	ENSG00000238793	SNORD124	-	small nucleolar RNA, C/D box 124	snoRNA
74726	chr15	63188701	63190020	+	0	NA	promoter-TSS (NM_016530)	promoter-TSS (NM_016530)	-246	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
41955	chr11	67319451	67319550	+	0	NA	intron (NR_024469, intron 1 of 3)	intron (NR_024469, intron 1 of 3)	1661	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
4704	chr1	23141301	23141500	+	0	NA	intron (NM_033631, intron 1 of 4)	intron (NM_033631, intron 1 of 4)	27456	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
139795	chr2	230288021	230288480	+	0	NA	intron (NM_001278451, intron 17 of 25)	intron (NM_001278451, intron 17 of 25)	-38921	NM_001308163	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
36232	chr11	3654001	3654700	+	0	NA	intron (NM_004314, intron 1 of 4)	intron (NM_004314, intron 1 of 4)	9222	NM_004314	417		NM_004314	ENSG00000129744	ART1	ART2|ARTC1|CD296|RT6	ADP-ribosyltransferase 1	protein-coding
106405	chr18	13463451	13463950	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	3753	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
155107	chr22	37608001	37610030	+	0	NA	promoter-TSS (NM_001172688)	promoter-TSS (NM_001172688)	-25	NM_001172688	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
41437	chr11	66075871	66076230	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	5778	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
14358	chr1	144025801	144026260	+	0	NA	intron (NR_120535, intron 2 of 7)	L2b|LINE|L2	-52511	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
207800	chr7	50273651	50273950	+	0	NA	Intergenic	Intergenic	-30264	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
164857	chr3	71058421	71059080	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	6174	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
59084	chr13	21060121	21060650	+	0	NA	intron (NM_014572, intron 1 of 7)	CpG	1201	NM_014572	26524		NM_014572	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
116722	chr19	18454751	18455050	+	0	NA	intron (NM_006532, intron 6 of 11)	AluSx3|SINE|Alu	-16767	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
190476	chr5	180289601	180289800	+	0	NA	intron (NM_001364609, intron 1 of 12)	intron (NM_001364609, intron 1 of 12)	1575	NM_001364612	5601		NM_002752	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
137698	chr2	197492071	197493150	+	0	NA	intron (NM_199440, intron 7 of 11)	intron (NM_199440, intron 7 of 11)	-5707	NR_132788	106635540		NR_132788		SNORA105B	-	small nucleolar RNA, H/ACA box 105B	snoRNA
141896	chr20	842921	843180	+	0	NA	intron (NM_001289147, intron 1 of 1)	L2a|LINE|L2	-1593	NM_031424	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
38873	chr11	47355451	47355750	+	0	NA	intron (NM_003120, intron 4 of 4)	CpG	-2898	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
97368	chr17	43312871	43313230	+	0	NA	Intergenic	MER39B|LTR|ERV1	-12819	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
65714	chr14	52823451	52823850	+	0	NA	Intergenic	Intergenic	-32043	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
201304	chr6	144351171	144351330	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	-54405	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
135388	chr2	160490171	160490330	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	3557	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
166121	chr3	111301371	111301700	+	0	NA	Intergenic	Intergenic	229719	NM_001243288	25945		NM_015480	ENSG00000177707	NECTIN3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3	nectin cell adhesion molecule 3	protein-coding
183726	chr5	81022271	81022630	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-61543	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
170757	chr3	188433271	188433430	+	0	NA	intron (NR_164692, intron 3 of 9)	intron (NR_164692, intron 3 of 9)	135316	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
222155	chr8	132758351	132758800	+	0	NA	intron (NM_001382401, intron 2 of 10)	intron (NM_001382401, intron 2 of 10)	2007	NM_001382396	137835		NM_144649	ENSG00000165071	TMEM71	-	transmembrane protein 71	protein-coding
95048	chr17	32522421	32523700	+	0	NA	intron (NM_015194, intron 21 of 21)	AluY|SINE|Alu	36067	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
94933	chr17	32010451	32010750	+	0	NA	intron (NM_001321350, intron 1 of 14)	L1MA4|LINE|L1	3217	NM_001321350	114659		NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
210133	chr7	98213601	98214050	+	0	NA	TTS (NM_015395)	TTS (NM_015395)	2386	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
82525	chr16	18318151	18318250	+	0	NA	exon (NM_001282511, exon 9 of 9).2	exon (NM_001282511, exon 9 of 9).2	14462	NM_001282507	101059938		NM_001282507	ENSG00000214967	NPIPA7	NPIPA8	nuclear pore complex interacting protein family member A7	protein-coding
123503	chr19	54207101	54207300	+	0	NA	intron (NR_135763, intron 5 of 5).9	intron (NR_135763, intron 5 of 5).9	6342	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
209498	chr7	76805921	76806180	+	0	NA	Intergenic	Intergenic	-174772	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
138303	chr2	203731871	203732030	+	0	NA	intron (NM_001243078, intron 2 of 2)	intron (NM_001243078, intron 2 of 2)	25311	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
17628	chr1	157074251	157074750	+	0	NA	Intergenic	Intergenic	25308	NM_001004341	440695		NM_001004341	ENSG00000253831	ETV3L	-	ETS variant transcription factor 3 like	protein-coding
56596	chr12	118052651	118054030	+	0	NA	intron (NM_001278557, intron 1 of 8)	intron (NM_001278557, intron 1 of 8)	7839	NM_018639	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
65675	chr14	52684001	52684200	+	0	NA	intron (NM_001382467, intron 1 of 14)	intron (NM_001382467, intron 1 of 14)	11458	NM_001382476	30001		NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
189016	chr5	168643351	168644100	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-63202	NR_130737	101927969		NR_130737		SLIT3-AS2	-	SLIT3 antisense RNA 2	ncRNA
71928	chr15	22837171	22837330	+	0	NA	Intergenic	AluSg|SINE|Alu	-1391	NM_001184889	81614		NM_030922	ENSG00000140157	NIPA2	SLC57A2	NIPA magnesium transporter 2	protein-coding
160359	chr3	27837171	27837350	+	0	NA	intron (NR_146630, intron 3 of 4)	MLT2B3|LTR|ERVL	-3124	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
111530	chr19	4018901	4021480	+	0	NA	intron (NM_015897, intron 2 of 10)	AluY|SINE|Alu	12454	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
201031	chr6	141677601	141677900	+	0	NA	Intergenic	Intergenic	-455409	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
178250	chr4	143517371	143518030	+	0	NA	intron (NM_003601, intron 2 of 23)	MSTD|LTR|ERVL-MaLR	-2863	NR_104027	100128055		NR_104027	ENSG00000245112	SMARCA5-AS1	-	SMARCA5 antisense RNA 1	ncRNA
237313	chrX	118126451	118126550	+	0	NA	Intergenic	MIR|SINE|MIR	-9160	NM_001168301	90293		NM_033495	ENSG00000003096	KLHL13	BKLHD2	kelch like family member 13	protein-coding
49676	chr12	29810251	29810350	+	0	NA	Intergenic	L1PA3|LINE|L1	-25541	NM_175861	83857		NM_031920	ENSG00000133687	TMTC1	ARG99|OLF|TMTC1A	transmembrane O-mannosyltransferase targeting cadherins 1	protein-coding
17446	chr1	156683971	156684680	+	0	NA	Intergenic	Intergenic	-6918	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
7428	chr1	32965901	32966480	+	0	NA	Intergenic	AluY|SINE|Alu	-1381	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
16243	chr1	153953901	153954100	+	0	NA	intron (NM_181715, intron 4 of 13)	intron (NM_181715, intron 4 of 13)	4612	NM_181715	200186		NM_181715	ENSG00000160741	CRTC2	TORC-2|TORC2	CREB regulated transcription coactivator 2	protein-coding
101880	chr17	74305851	74306300	+	0	NA	intron (NR_148379, intron 8 of 12)	MIR|SINE|MIR	-20151	NM_153209	124602		NM_153209	ENSG00000196169	KIF19	KIF19A	kinesin family member 19	protein-coding
203443	chr7	363601	364700	+	0	NA	Intergenic	AluSg7|SINE|Alu	-15275	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
149115	chr21	17602951	17603250	+	0	NA	intron (NM_006806, intron 3 of 4)	Tigger15a|DNA|TcMar-Tigger	-8586	NR_149073	110806272		NR_149073	ENSG00000280594	BTG3-AS1	ASBEL	BTG3 antisense RNA 1	ncRNA
105694	chr18	2675221	2675880	+	0	NA	intron (NM_015295, intron 5 of 47)	AluSx3|SINE|Alu	19824	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
66749	chr14	64514051	64514150	+	0	NA	TTS (NR_110550)	TTS (NR_110550)	-8887	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
46658	chr11	128707301	128707600	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-11427	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
164351	chr3	58034071	58034230	+	0	NA	intron (NM_001164319, intron 1 of 44)	AluSx1|SINE|Alu	25728	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
234098	chrX	9351621	9353430	+	0	NA	Intergenic	Intergenic	-110770	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
143876	chr20	32562701	32563700	+	0	NA	intron (NM_001256798, intron 1 of 10)	GA-rich|Low_complexity|Low_complexity	22133	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
110364	chr19	1902321	1902580	+	0	NA	Intergenic	Intergenic	-2949	NM_138422	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
108810	chr18	78632771	78633900	+	0	NA	Intergenic	Intergenic	-346940	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
214472	chr7	150368531	150369980	+	0	NA	intron (NM_001362745, intron 1 of 2)	CpG	433	NM_001362745	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
226545	chr9	72352801	72353280	+	0	NA	3' UTR (NM_006007, exon 6 of 6)	3' UTR (NM_006007, exon 6 of 6)	11516	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
86834	chr16	67892801	67894400	+	0	NA	intron (NM_006742, intron 1 of 2)	CpG	346	NM_006742	5681		NM_006742	ENSG00000159792	PSKH1	-	protein serine kinase H1	protein-coding
107384	chr18	46069851	46069950	+	0	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	2360	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
19314	chr1	173280921	173281180	+	0	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	-73719	NM_003326	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
233556	chrX	272571	273050	+	0	NA	Intergenic	Intergenic	-3546	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228356	chr9	99054251	99054550	+	0	NA	intron (NM_001855, intron 31 of 41)	L2c|LINE|L2	-50713	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
20807	chr1	201208071	201208730	+	0	NA	exon (NM_001164586, exon 12 of 24)	exon (NM_001164586, exon 12 of 24)	17576	NM_001367841	91156		NM_178275	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin like and fibronectin type III domain containing 1	protein-coding
152208	chr22	20126551	20126850	+	0	NA	TTS (NR_145765)	TTS (NR_145765)	298	NR_145765	109617010		NR_145765	ENSG00000264346	SNORA77B	-	small nucleolar RNA, H/ACA box 77B	snoRNA
144923	chr20	36976621	36977530	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-25367	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
218036	chr8	38789201	38789400	+	0	NA	intron (NR_148050, intron 2 of 4)	intron (NR_148050, intron 2 of 4)	1194	NM_001352798	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
54344	chr12	89682701	89682900	+	0	NA	intron (NM_001366520, intron 1 of 21)	L1MC4a|LINE|L1	26038	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
93420	chr17	18413251	18413350	+	0	NA	intron (NR_104343, intron 1 of 1)	AluY|SINE|Alu	2141	NR_104343	400579		NR_104343	ENSG00000220161	LINC02076	-	long intergenic non-protein coding RNA 2076	ncRNA
181318	chr5	40360021	40360580	+	0	NA	Intergenic	Intergenic	308009	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
60336	chr13	40732751	40733050	+	0	NA	intron (NM_005830, intron 6 of 6)	intron (NM_005830, intron 6 of 6)	-5013	NR_031723	100313896		NR_031723		MIR320D1	MIR320D-1|MIRN320D1|mir-320d-1	microRNA 320d-1	ncRNA
47192	chr12	808871	809030	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSq2|SINE|Alu	56027	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
67541	chr14	71138721	71139480	+	0	NA	Intergenic	Intergenic	-181376	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
72944	chr15	40446921	40447180	+	0	NA	intron (NR_125372, intron 1 of 4)	intron (NR_125372, intron 1 of 4)	6097	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
105793	chr18	2904351	2904850	+	0	NA	intron (NM_032048, intron 4 of 7)	HAL1|LINE|L1	42023	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
163135	chr3	50136101	50136300	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-18858	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
142088	chr20	2508301	2509430	+	0	NA	promoter-TSS (NM_024325)	promoter-TSS (NM_024325)	50	NM_001321800	79175		NM_024325	ENSG00000088876	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
100115	chr17	58335501	58336790	+	0	NA	promoter-TSS (NR_039889)	promoter-TSS (NR_039889)	-123	NR_039889	100616220		NR_039889	ENSG00000264399	MIR4736	-	microRNA 4736	ncRNA
76625	chr15	75537601	75537800	+	0	NA	intron (NM_002833, intron 1 of 12)	AluSc|SINE|Alu	41615	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
86017	chr16	57482071	57482750	+	0	NA	intron (NM_001369618, intron 1 of 7)	AluY|SINE|Alu	-2033	NM_001369619	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
68722	chr14	90803721	90804030	+	0	NA	intron (NM_001010854, intron 1 of 19)	intron (NM_001010854, intron 1 of 19)	12542	NM_001320421	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
61865	chr13	77019821	77020080	+	0	NA	intron (NM_012158, intron 2 of 4)	intron (NM_012158, intron 2 of 4)	7209	NM_012158	26224		NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A|IDDSFAS	F-box and leucine rich repeat protein 3	protein-coding
29399	chr10	70147921	70148350	+	0	NA	3' UTR (NM_020150, exon 7 of 7)	3' UTR (NM_020150, exon 7 of 7)	-1435	NM_001040273	219743		NM_173555	ENSG00000156521	TYSND1	NET41	trypsin like peroxisomal matrix peptidase 1	protein-coding
33573	chr10	119477971	119479180	+	0	NA	Intergenic	Intergenic	57958	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
158622	chr3	4901871	4902030	+	0	NA	intron (NR_125916, intron 1 of 2)	intron (NR_125916, intron 1 of 2)	4551	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
157434	chr22	45186101	45186350	+	0	NA	3' UTR (NM_007172, exon 8 of 8)	3' UTR (NM_007172, exon 8 of 8)	5387	NR_146602	105373064		NR_146602		LOC105373064	-	uncharacterized LOC105373064	ncRNA
175679	chr4	77007271	77008030	+	0	NA	intron (NM_018243, intron 3 of 9)	intron (NM_018243, intron 3 of 9)	57898	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
185303	chr5	126716821	126717280	+	0	NA	Intergenic	Intergenic	59436	NR_134485	102723557		NR_134485	ENSG00000251072	LMNB1-DT	-	LMNB1 divergent transcript	ncRNA
196058	chr6	42134901	42135300	+	0	NA	intron (NM_001164446, intron 1 of 4)	intron (NM_001164446, intron 1 of 4)	7520	NM_001164446	647024		NM_001164446	ENSG00000188112	C6orf132	LncCCLM|bA7K24.2	chromosome 6 open reading frame 132	protein-coding
107230	chr18	36810571	36810730	+	0	NA	intron (NM_001271955, intron 2 of 4)	intron (NM_001271955, intron 2 of 4)	18352	NM_001271953	25941		NM_015476	ENSG00000134779	TPGS2	C18orf10|HMFN0601|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
87164	chr16	69324871	69325250	+	0	NA	3' UTR (NM_013245, exon 11 of 11)	3' UTR (NM_013245, exon 11 of 11)	5528	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
169571	chr3	170363551	170364280	+	0	NA	intron (NM_001145098, intron 3 of 7)	intron (NM_001145098, intron 3 of 7)	4292	NM_001248008	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
188388	chr5	152486751	152486850	+	0	NA	Intergenic	Intergenic	-81521	NM_020167	56923		NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
2837	chr1	11064201	11064450	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4307	NM_003132	6723		NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
192445	chr6	24901821	24902380	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	8634	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
127362	chr2	39218351	39218850	+	0	NA	intron (NM_001009565, intron 2 of 7)	MLT2B2|LTR|ERVL	10988	NM_001346911	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
214565	chr7	150579821	150580730	+	0	NA	Intergenic	L1PA4|LINE|L1	12885	NM_018326	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
61890	chr13	77313801	77314600	+	0	NA	intron (NM_015057, intron 1 of 82)	L1MA8|LINE|L1	12894	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
55210	chr12	101792501	101793000	+	0	NA	intron (NM_024312, intron 2 of 20)	intron (NM_024312, intron 2 of 20)	38209	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
200781	chr6	137876451	137876950	+	0	NA	intron (NM_006290, intron 5 of 8)	MIRb|SINE|MIR	-8467	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
195529	chr6	37288601	37288800	+	0	NA	intron (NM_017772, intron 7 of 12)	AluJo|SINE|Alu	-30545	NR_104443								
2535	chr1	9723271	9723430	+	0	NA	intron (NM_001350234, intron 20 of 23)	intron (NM_001350234, intron 20 of 23)	31883	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
217761	chr8	31032651	31034430	+	0	NA	promoter-TSS (NM_013357)	promoter-TSS (NM_013357)	-184	NM_001015508	29942		NM_013357	ENSG00000172733	PURG	PURG-A|PURG-B|PURGA|PURGB	purine rich element binding protein G	protein-coding
38001	chr11	35065471	35065630	+	0	NA	Intergenic	L2a|LINE|L2	72482	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
137912	chr2	200890851	200891250	+	0	NA	promoter-TSS (NM_001142356)	promoter-TSS (NM_001142356)	-868	NM_001142356	60491		NM_021824	ENSG00000196290	NIF3L1	ALS2CR1|CALS-7|MDS015	NGG1 interacting factor 3 like 1	protein-coding
82899	chr16	21629601	21630200	+	0	NA	intron (NM_001288660, intron 4 of 4)	LTR12D|LTR|ERV1	22708	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
64007	chr14	22495721	22495980	+	0	NA	Intergenic	Intergenic	-12891	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
213055	chr7	131063751	131063930	+	0	NA	intron (NR_109852, intron 2 of 5)	L1ME3C|LINE|L1	43190	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
74203	chr15	56037951	56038450	+	0	NA	Intergenic	MER57A1|LTR|ERV1	-44588	NM_001329212	4734		NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	NEDD4 E3 ubiquitin protein ligase	protein-coding
26179	chr10	14532821	14533080	+	0	NA	promoter-TSS (NM_001320741)	promoter-TSS (NM_001320741)	-236	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
232117	chr9	133737971	133738550	+	0	NA	promoter-TSS (NM_001134707)	promoter-TSS (NM_001134707)	92	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
102119	chr17	75033501	75034100	+	0	NA	intron (NR_110835, intron 1 of 7)	intron (NR_110835, intron 1 of 7)	1229	NR_110835	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
238535	chrX	153731401	153731600	+	0	NA	intron (NM_000033, intron 2 of 9)	L1MEd|LINE|L1	6644	NM_000033	215		NM_000033	ENSG00000101986	ABCD1	ABC42|ALD|ALDP|AMN	ATP binding cassette subfamily D member 1	protein-coding
223335	chr8	143827751	143827850	+	0	NA	intron (NM_001362896, intron 1 of 12)	intron (NM_001362896, intron 1 of 12)	1241	NM_001362896	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
85433	chr16	50372601	50373600	+	0	NA	Intergenic	Intergenic	-4112	NM_013263	29117		NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4|SMARCI1	bromodomain containing 7	protein-coding
194712	chr6	33746701	33746900	+	0	NA	5' UTR (NM_001142883, exon 1 of 7)	5' UTR (NM_001142883, exon 1 of 7)	105	NM_054111	117283		NM_054111	ENSG00000161896	IP6K3	IHPK3|INSP6K3	inositol hexakisphosphate kinase 3	protein-coding
219808	chr8	81291101	81291330	+	0	NA	Intergenic	Intergenic	10679	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
121256	chr19	46686521	46686980	+	0	NA	intron (NM_001079881, intron 15 of 18)	AluY|SINE|Alu	22604	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
137283	chr2	195523251	195523750	+	0	NA	Intergenic	L1PA3|LINE|L1	-133458	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
21990	chr1	209750601	209750900	+	0	NA	Intergenic	Intergenic	-5303	NR_109871	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
84589	chr16	30653651	30653750	+	0	NA	intron (NM_024031, intron 6 of 11)	AluSx1|SINE|Alu	2740	NM_024031	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
39947	chr11	62553091	62554320	+	0	NA	Intergenic	Intergenic	6601	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
190449	chr5	179906121	179906480	+	0	NA	intron (NM_015043, intron 1 of 20)	intron (NM_015043, intron 1 of 20)	1597	NM_198868	23061		NM_015043	ENSG00000197226	TBC1D9B	GRAMD9B	TBC1 domain family member 9B	protein-coding
78833	chr15	99735551	99735880	+	0	NA	Intergenic	Intergenic	-2271	NM_001284422	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
28793	chr10	62084871	62085430	+	0	NA	intron (NM_001244638, intron 5 of 6)	MIRb|SINE|MIR	35793	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
156815	chr22	41930001	41930500	+	0	NA	Intergenic	AluSz|SINE|Alu	-3444	NM_052945	115650		NM_052945	ENSG00000159958	TNFRSF13C	BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin	TNF receptor superfamily member 13C	protein-coding
162967	chr3	49684401	49684950	+	0	NA	TTS (NM_001640)	TTS (NM_001640)	4088	NM_020998	4485		NM_020998	ENSG00000173531	MST1	D3F15S2|DNF15S2|HGFL|MSP|NF15S2	macrophage stimulating 1	protein-coding
116895	chr19	18709951	18710450	+	0	NA	intron (NM_015321, intron 1 of 13)	intron (NM_015321, intron 1 of 13)	26520	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
185009	chr5	115263771	115263930	+	0	NA	promoter-TSS (NM_005023)	promoter-TSS (NM_005023)	-973	NM_005023	5229		NM_005023	ENSG00000164219	PGGT1B	BGGI|GGTI	protein geranylgeranyltransferase type I subunit beta	protein-coding
207214	chr7	43650911	43651800	+	0	NA	intron (NM_001321205, intron 1 of 3)	intron (NM_001321205, intron 1 of 3)	68247	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
174937	chr4	49130621	49131030	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	144183	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
21965	chr1	208347551	208347650	+	0	NA	Intergenic	Intergenic	-103216	NM_025179	5362		NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
217490	chr8	29032921	29033280	+	0	NA	intron (NM_001324391, intron 6 of 10)	intron (NM_001324391, intron 6 of 10)	141786	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
214104	chr7	143838301	143838600	+	0	NA	Intergenic	AluSx|SINE|Alu	-1733	NR_015421	154761		NR_015421	ENSG00000291149	LOC154761	-	family with sequence similarity 115, member C pseudogene	pseudo
224151	chr9	4866021	4866480	+	0	NA	Intergenic	MIRb|SINE|MIR	15953	NR_029836	406894		NR_029836	ENSG00000199065	MIR101-2	MIRN101-2|mir-101-2	microRNA 101-2	ncRNA
139822	chr2	230411171	230412750	+	0	NA	Intergenic	Intergenic	-4196	NM_001206703	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
76272	chr15	74094501	74094700	+	0	NA	Intergenic	Intergenic	5606	NR_160652	732265		NR_160652		COMMD4P2	-	COMM domain containing 4 pseudogene 2	pseudo
60907	chr13	46169751	46170300	+	0	NA	intron (NM_002298, intron 1 of 15)	intron (NM_002298, intron 1 of 15)	12152	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
80448	chr16	2671221	2671900	+	0	NA	non-coding (NR_040023, exon 2 of 3)	non-coding (NR_040023, exon 2 of 3)	1879	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
234066	chrX	7996571	7996730	+	0	NA	Intergenic	Intergenic	-68911	NM_001142389	8228		NM_004650	ENSG00000006757	PNPLA4	DXS1283E|GS2|iPLA2eta	patatin like phospholipase domain containing 4	protein-coding
68214	chr14	76918001	76918400	+	0	NA	Intergenic	Intergenic	-41438	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
107017	chr18	32087051	32087230	+	0	NA	Intergenic	MER21A|LTR|ERVL	-4734	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
237019	chrX	102602051	102602350	+	0	NA	exon (NM_001168485, exon 5 of 5)	exon (NM_001168485, exon 5 of 5)	2685	NM_022838	64860		NM_022838	ENSG00000125962	ARMCX5	GASP5	armadillo repeat containing X-linked 5	protein-coding
15517	chr1	150506351	150506850	+	0	NA	intron (NM_001271896, intron 13 of 13)	(AC)n|Simple_repeat|Simple_repeat	-1509	NM_022664	1893		NM_004425	ENSG00000143369	ECM1	URBWD	extracellular matrix protein 1	protein-coding
9376	chr1	47262901	47263150	+	0	NA	exon (NM_001377417, exon 17 of 19)	exon (NM_001377417, exon 17 of 19)	-30690	NM_001290403	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
30189	chr10	74439251	74439350	+	0	NA	intron (NM_001369124, intron 6 of 9)	intron (NM_001369124, intron 6 of 9)	90024	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
40117	chr11	62821101	62821680	+	0	NA	intron (NM_001244666, intron 10 of 10)	L1MEf|LINE|L1	10661	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
43002	chr11	73972811	73973300	+	0	NA	Intergenic	Intergenic	9788	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
226827	chr9	77761721	77762300	+	0	NA	intron (NM_002072, intron 5 of 6)	SVA_D|Retroposon|SVA	-113688	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
164678	chr3	67384871	67385230	+	0	NA	intron (NM_003848, intron 10 of 10)	intron (NM_003848, intron 10 of 10)	159586	NR_036234	100422941		NR_036234	ENSG00000283298	MIR4272	-	microRNA 4272	ncRNA
131833	chr2	98658851	98659750	+	0	NA	intron (NM_001160154, intron 2 of 12)	intron (NM_001160154, intron 2 of 12)	4173	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
168156	chr3	139328101	139328530	+	0	NA	Intergenic	Intergenic	-15679	NM_001363893	56945		NM_020191	ENSG00000175110	MRPS22	C3orf5|COXPD5|GIBT|GK002|MRP-S22|ODG7|RPMS22|mS22	mitochondrial ribosomal protein S22	protein-coding
98469	chr17	47162171	47162400	+	0	NA	intron (NR_148340, intron 2 of 16)	L2|LINE|L2	27010	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
227963	chr9	94918021	94918380	+	0	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	27354	NR_147613	101928119		NR_147613		LOC101928119	-	uncharacterized LOC101928119	ncRNA
208834	chr7	73691851	73692580	+	0	NA	intron (NM_001202560, intron 6 of 12)	L2a|LINE|L2	8618	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
130611	chr2	85964021	85964280	+	0	NA	Intergenic	L1PA4|LINE|L1	74870	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
78071	chr15	90193051	90193550	+	0	NA	intron (NM_001324031, intron 1 of 14)	intron (NM_001324031, intron 1 of 14)	1379	NM_001324031	10509		NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
201331	chr6	144459571	144459730	+	0	NA	intron (NM_007124, intron 20 of 73)	AluJo|SINE|Alu	53995	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
218517	chr8	53657121	53658230	+	0	NA	Intergenic	Intergenic	-133710	NR_149032	100507516		NR_149032	ENSG00000237807	LINC02984	-	long intergenic non-protein coding RNA 2984	ncRNA
74315	chr15	58362651	58362750	+	0	NA	Intergenic	L1PA7|LINE|L1	-69291	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
189316	chr5	172147051	172147150	+	0	NA	intron (NM_005990, intron 2 of 18)	MER21A|LTR|ERVL	41124	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
81523	chr16	9081901	9082880	+	0	NA	Intergenic	AluSx|SINE|Alu	-9254	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
220153	chr8	94951401	94951950	+	0	NA	intron (NR_148904, intron 2 of 5)	Zaphod3|DNA|hAT-Tip100	2115	NR_148909	137682		NM_152416	ENSG00000156170	NDUFAF6	C8orf38|FRTS5|MC1DN17	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein-coding
171429	chr3	196254571	196254730	+	0	NA	intron (NM_005017, intron 4 of 9)	AluJr|SINE|Alu	33076	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
34273	chr10	131898571	131899180	+	0	NA	Intergenic	L2a|LINE|L2	-2133	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
160059	chr3	18643401	18643680	+	0	NA	Intergenic	Intergenic	-197948	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
212135	chr7	116500521	116500980	+	0	NA	intron (NM_001233, intron 2 of 2)	intron (NM_001233, intron 2 of 2)	704	NM_001206748	858		NM_001233	ENSG00000105971	CAV2	CAV	caveolin 2	protein-coding
29958	chr10	73501601	73502200	+	0	NA	intron (NR_146998, intron 19 of 20)	L2a|LINE|L2	-5876	NM_001289969	5532		NM_021132	ENSG00000107758	PPP3CB	CALNA2|CALNB|CNA2|PP2Bbeta	protein phosphatase 3 catalytic subunit beta	protein-coding
94903	chr17	31654871	31655230	+	0	NA	Intergenic	Intergenic	79639	NR_029856	100126356		NR_029856	ENSG00000283978	MIR365B	MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b	microRNA 365b	ncRNA
216642	chr8	22116121	22116600	+	0	NA	exon (NM_005144, exon 18 of 19)	exon (NM_005144, exon 18 of 19)	-6941	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
26976	chr10	26739951	26740250	+	0	NA	intron (NM_001321979, intron 10 of 11)	AluSc8|SINE|Alu	42399	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
138003	chr2	201261391	201262130	+	0	NA	intron (NM_033356, intron 1 of 7)	intron (NM_033356, intron 1 of 7)	1224	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
204684	chr7	5502801	5503350	+	0	NA	intron (NM_024963, intron 2 of 4)	L1M4|LINE|L1	-7158	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
201004	chr6	140101371	140101930	+	0	NA	Intergenic	Intergenic	-103602	NR_037441	100500879		NR_037441	ENSG00000263514	MIR3668	-	microRNA 3668	ncRNA
121550	chr19	47251851	47251950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4625	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
127178	chr2	38375901	38378130	+	0	NA	promoter-TSS (NM_001330460)	promoter-TSS (NM_001330460)	258	NM_022374	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
146235	chr20	48818051	48819280	+	0	NA	intron (NM_020820, intron 1 of 39)	MIRb|SINE|MIR	9334	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
179171	chr4	170047801	170048280	+	0	NA	Intergenic	Intergenic	-15037	NR_125890	101928198		NR_125890	ENSG00000198948	LOC101928198	-	uncharacterized LOC101928198	ncRNA
6119	chr1	27346371	27346530	+	0	NA	intron (NM_032872, intron 2 of 14)	MIRb|SINE|MIR	4428	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
135088	chr2	157315601	157316000	+	0	NA	3' UTR (NM_001329868, exon 11 of 11)	3' UTR (NM_001329868, exon 11 of 11)	10024	NM_001304346	57471		NM_020711	ENSG00000136541	ERMN	JN|KIAA1189	ermin	protein-coding
34086	chr10	125150421	125150680	+	0	NA	intron (NM_001290214, intron 1 of 10)	intron (NM_001290214, intron 1 of 10)	8227	NM_001321013	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
211587	chr7	105792471	105793100	+	0	NA	intron (NM_001385596, intron 2 of 11)	MER63A|DNA|hAT-Blackjack	83800	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
87057	chr16	68332471	68332830	+	0	NA	intron (NR_165372, intron 6 of 19)	L1MEc|LINE|L1	21536	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
9561	chr1	51627701	51627950	+	0	NA	intron (NM_148906, intron 1 of 22)	L2a|LINE|L2	10733	NR_036662	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
183140	chr5	75023551	75024450	+	0	NA	Intergenic	Intergenic	28558	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
134613	chr2	144393651	144394150	+	0	NA	intron (NM_014795, intron 9 of 9)	intron (NM_014795, intron 9 of 9)	-60831	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
112707	chr19	7151871	7152230	+	0	NA	intron (NM_000208, intron 10 of 21)	AluJr4|SINE|Alu	82347	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
199824	chr6	127737001	127737800	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	117788	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
173535	chr4	10021051	10021150	+	0	NA	intron (NM_001001290, intron 2 of 12)	MIRc|SINE|MIR	397	NM_020041	56606		NM_020041	ENSG00000109667	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 member 9	protein-coding
41407	chr11	66027651	66028150	+	0	NA	Intergenic	AluSz|SINE|Alu	-1421	NM_053054	117144		NM_053054	ENSG00000175294	CATSPER1	CATSPER|SPGF7	cation channel sperm associated 1	protein-coding
36202	chr11	3421651	3424350	+	0	NA	Intergenic	CpG	-31085	NR_044999	10821		NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
224662	chr9	21030271	21032150	+	0	NA	intron (NM_001321903, intron 1 of 8)	intron (NM_001321903, intron 1 of 8)	430	NM_001321883	401494		NM_001010915	ENSG00000188921	HACD4	PTPLAD2	3-hydroxyacyl-CoA dehydratase 4	protein-coding
204783	chr7	5614951	5615250	+	0	NA	Intergenic	Intergenic	22284	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
21343	chr1	204584271	204584430	+	0	NA	Intergenic	MIR|SINE|MIR	67944	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
96301	chr17	39954921	39955180	+	0	NA	Intergenic	Intergenic	-7954	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
203476	chr7	517901	518330	+	0	NA	intron (NM_033023, intron 1 of 5)	CpG-25233	1729	NM_002607	5154		NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
42953	chr11	73645701	73645900	+	0	NA	promoter-TSS (NM_021200)	promoter-TSS (NM_021200)	-781	NM_021200	58473		NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding
90003	chr16	89880171	89880530	+	0	NA	intron (NM_014972, intron 1 of 17)	AluSx|SINE|Alu	6758	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
218760	chr8	58961401	58962400	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	157247	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
136416	chr2	176178551	176178850	+	0	NA	promoter-TSS (NR_110468)	promoter-TSS (NR_110468)	534	NR_110457	102800310		NR_110457		HAGLROS	-	HAGLR opposite strand lncRNA	ncRNA
96972	chr17	42252751	42254480	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	22776	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
7358	chr1	32796401	32796680	+	0	NA	intron (NM_003680, intron 5 of 12)	AluJo|SINE|Alu	-20902	NM_001256121	64766		NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding
194128	chr6	31967721	31967980	+	0	NA	exon (NM_006929, exon 22 of 28).3	exon (NM_006929, exon 22 of 28).3	-3325	NR_026717	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
30986	chr10	88076201	88076400	+	0	NA	Intergenic	Intergenic	212675	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
134714	chr2	144512001	144512250	+	0	NA	non-coding (NR_033258, exon 3 of 3)	non-coding (NR_033258, exon 3 of 3)	-7489	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
47618	chr12	6073601	6073800	+	0	NA	exon (NM_000552, exon 8 of 52)	exon (NM_000552, exon 8 of 52)	-33517	NR_145989	109729112		NR_145989		SNORA120	-	small nucleolar RNA, H/ACA box 120	snoRNA
218491	chr8	52014221	52014580	+	0	NA	Intergenic	MER90a|LTR|ERV1	-115214	NM_001286782	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
197914	chr6	89411121	89412950	+	0	NA	5' UTR (NM_021244, exon 1 of 7)	5' UTR (NM_021244, exon 1 of 7)	238	NM_021244	58528		NM_021244	ENSG00000025039	RRAGD	HOMG7|RAGD|bA11D8.2.1	Ras related GTP binding D	protein-coding
231209	chr9	129949321	129949580	+	0	NA	intron (NM_001363755, intron 6 of 15)	intron (NM_001363755, intron 6 of 15)	79845	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
54478	chr12	92034001	92034200	+	0	NA	intron (NR_132341, intron 1 of 4)	AluJo|SINE|Alu	107613	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
101207	chr17	65554721	65555000	+	0	NA	intron (NM_004655, intron 2 of 10)	intron (NM_004655, intron 2 of 10)	6788	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
52915	chr12	57233871	57234230	+	0	NA	TTS (NM_020142)	TTS (NM_020142)	3684	NR_048562	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
143843	chr20	32523871	32524030	+	0	NA	intron (NM_001256798, intron 2 of 10)	intron (NM_001256798, intron 2 of 10)	13991	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
170202	chr3	184006121	184006580	+	0	NA	promoter-TSS (NR_046570)	promoter-TSS (NR_046570)	12	NR_046570	100873982		NR_046570	ENSG00000223882	ABCC5-AS1	-	ABCC5 antisense RNA 1	ncRNA
176870	chr4	102624271	102624650	+	0	NA	Intergenic	Intergenic	-121974	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
178556	chr4	151108001	151108900	+	0	NA	Intergenic	HAL1M8|LINE|L1	4623	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
27601	chr10	32816101	32816340	+	0	NA	intron (NM_001321115, intron 32 of 43)	L1PA4|LINE|L1	85252	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
88648	chr16	85644201	85644600	+	0	NA	intron (NM_014615, intron 2 of 15)	L1MB8|LINE|L1	31078	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
176345	chr4	88320421	88321150	+	0	NA	intron (NR_134237, intron 3 of 3)	LTR103b_Mam|LTR|ERV1?	35855	NR_134236	105369192		NR_134236	ENSG00000246375	PPM1K-DT	-	PPM1K divergent transcript	ncRNA
147622	chr20	62142511	62144750	+	0	NA	promoter-TSS (NR_125981)	promoter-TSS (NR_125981)	-139	NR_125981	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
148434	chr20	63969021	63970600	+	0	NA	intron (NM_020713, intron 1 of 16)	CpG	120	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
10329	chr1	64902421	64903050	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	63814	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
80374	chr16	2529671	2530380	+	0	NA	TTS (NM_001048212)	TTS (NM_001048212)	1383	NM_001048212	752014		NM_001048212	ENSG00000205923	CEMP1	CP-23|CP23	cementum protein 1	protein-coding
9498	chr1	51246921	51247330	+	0	NA	intron (NM_014372, intron 1 of 2)	(TGAGAG)n|Simple_repeat|Simple_repeat	10852	NM_014372	26994		NM_014372	ENSG00000123091	RNF11	CGI-123|SID1669	ring finger protein 11	protein-coding
102360	chr17	75514171	75514530	+	0	NA	intron (NM_020753, intron 1 of 19)	intron (NM_020753, intron 1 of 19)	1187	NM_020753	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
233250	chr9	137271001	137272030	+	0	NA	intron (NM_015456, intron 10 of 12)	intron (NM_015456, intron 10 of 12)	-6211	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
90669	chr17	1708201	1709030	+	0	NA	intron (NM_001164407, intron 3 of 3)	AluSc|SINE|Alu	1762	NM_001164407	727910		NM_001164407	ENSG00000185561	TLCD2	-	TLC domain containing 2	protein-coding
110408	chr19	1955121	1955380	+	0	NA	promoter-TSS (NR_033400)	promoter-TSS (NR_033400)	-701	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
53143	chr12	57853871	57854230	+	0	NA	Intergenic	Intergenic	-7321	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
182401	chr5	61331501	61334330	+	0	NA	exon (NM_020928, exon 1 of 14)	exon (NM_020928, exon 1 of 14)	657	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
122232	chr19	48990771	48991550	+	0	NA	intron (NR_027763, intron 1 of 14)	intron (NR_027763, intron 1 of 14)	2149	NR_027763	2997		NM_002103	ENSG00000104812	GYS1	GSY|GYS	glycogen synthase 1	protein-coding
234730	chrX	21942121	21942380	+	0	NA	intron (NM_004595, intron 1 of 10)	intron (NM_004595, intron 1 of 10)	1541	NM_004595	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
52727	chr12	56605351	56605650	+	0	NA	intron (NM_001351156, intron 15 of 30)	AluJo|SINE|Alu	24826	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
108231	chr18	63199701	63200830	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	119504	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
33910	chr10	124594421	124594680	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-109478	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
109921	chr19	1298321	1298980	+	0	NA	intron (NM_001405, intron 3 of 3)	intron (NM_001405, intron 3 of 3)	12777	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
69151	chr14	92567351	92567650	+	0	NA	intron (NM_024832, intron 2 of 9)	MLT1H|LTR|ERVL-MaLR	-8734	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
166448	chr3	113985521	113985780	+	0	NA	intron (NR_148531, intron 11 of 14)	L1ME1|LINE|L1	37637	NM_001320467	254887		NM_173570	ENSG00000184307	ZDHHC23	DHHC-23|NIDD	zinc finger DHHC-type palmitoyltransferase 23	protein-coding
150920	chr21	44238521	44238780	+	0	NA	5' UTR (NM_001365759, exon 2 of 7)	5' UTR (NM_001365759, exon 2 of 7)	2293	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
226021	chr9	41969971	41970250	+	0	NA	exon (NM_001201380, exon 10 of 24)	exon (NM_001201380, exon 10 of 24)	159316	NM_001201380	728577		NM_001201380	ENSG00000154529	CNTNAP3B	-	contactin associated protein family member 3B	protein-coding
138309	chr2	203739301	203739900	+	0	NA	TTS (NM_001243077)	TTS (NM_001243077)	32961	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123509	chr19	54213971	54214130	+	0	NA	Intergenic	AluJr4|SINE|Alu	8957	NR_135494	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
162055	chr3	46811901	46812720	+	0	NA	non-coding (NR_160551, exon 1 of 3)	non-coding (NR_160551, exon 1 of 3)	264	NR_160551	729756		NR_160551		PRSS44P	PRSS44|TESSP-4|TESSP4	serine protease 44, pseudogene	pseudo
210139	chr7	98223871	98224030	+	0	NA	intron (NM_015395, intron 19 of 25)	intron (NM_015395, intron 19 of 25)	12511	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
208307	chr7	66101051	66101150	+	0	NA	Intergenic	Intergenic	-13718	NM_001142414	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
89062	chr16	88450371	88450950	+	0	NA	Intergenic	Intergenic	-2620	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
59422	chr13	25305951	25306650	+	0	NA	intron (NM_001008564, intron 1 of 14)	AluY|SINE|Alu	4675	NM_001008564	9818		NM_014089	ENSG00000139496	NUP58	NUP45|NUPL1|PRO2463	nucleoporin 58	protein-coding
211806	chr7	107889601	107889800	+	0	NA	Intergenic	Intergenic	-1407	NM_001289751	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
160353	chr3	27731351	27731850	+	0	NA	Intergenic	Intergenic	-8885	NM_001278183	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
129258	chr2	68381071	68381230	+	0	NA	intron (NM_002664, intron 3 of 8)	(AG)n|Simple_repeat|Simple_repeat	15868	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
9008	chr1	44721211	44722410	+	0	NA	promoter-TSS (NR_002753)	promoter-TSS (NR_002753)	91	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
177251	chr4	108763571	108763730	+	0	NA	promoter-TSS (NM_001331033)	promoter-TSS (NM_001331033)	-597	NM_001331033	64850		NM_031279	ENSG00000164089	ETNPPL	AGXT2L1	ethanolamine-phosphate phospho-lyase	protein-coding
92244	chr17	7915201	7917030	+	0	NA	exon (NM_001358699, exon 1 of 2)	exon (NM_001358699, exon 1 of 2)	174	NM_001358699	284023		NM_001358699	ENSG00000179859	RNF227	LINC02581	ring finger protein 227	protein-coding
46586	chr11	128515021	128515490	+	0	NA	intron (NM_001143820, intron 3 of 9)	(CA)n|Simple_repeat|Simple_repeat	7055	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
235542	chrX	47237101	47238080	+	0	NA	intron (NM_001371072, intron 1 of 20)	AluSx3|SINE|Alu	4581	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
76887	chr15	77985751	77986050	+	0	NA	Intergenic	Intergenic	8325	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
83938	chr16	29107751	29108050	+	0	NA	intron (NR_003369, intron 15 of 16)	intron (NR_003369, intron 15 of 16)	33058	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
73503	chr15	43763001	43763400	+	0	NA	exon (NM_005313, exon 5 of 13)	exon (NM_005313, exon 5 of 13)	13766	NM_025165	80237		NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
107536	chr18	48539691	48539980	+	0	NA	intron (NM_001142397, intron 2 of 12)	CpG-12534	804	NM_001142397	9811		NM_014772	ENSG00000134030	CTIF	Gm672|KIAA0427	cap binding complex dependent translation initiation factor	protein-coding
49094	chr12	14560971	14561130	+	0	NA	intron (NM_024829, intron 1 of 10)	intron (NM_024829, intron 1 of 10)	-6682	NR_120465	101928290		NR_120465	ENSG00000256751	PLBD1-AS1	-	PLBD1 antisense RNA 1	ncRNA
75051	chr15	64159551	64160050	+	0	NA	intron (NM_000942, intron 3 of 4)	intron (NM_000942, intron 3 of 4)	3222	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
71059	chr14	104806421	104806730	+	0	NA	Intergenic	(CATCAC)n|Simple_repeat|Simple_repeat	5474	NM_001137601	100128927		NM_001137601	ENSG00000179627	ZBTB42	LCCS6|ZNF925	zinc finger and BTB domain containing 42	protein-coding
69858	chr14	99265471	99266000	+	0	NA	intron (NM_022898, intron 1 of 2)	intron (NM_022898, intron 1 of 2)	6462	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
66876	chr14	65083071	65083230	+	0	NA	TTS (NM_001271068)	TTS (NM_001271068)	-6768	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
83289	chr16	24076301	24076700	+	0	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	-126616	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
230422	chr9	128132251	128132930	+	0	NA	Intergenic	Intergenic	4061	NR_024425	389791		NM_001013652	ENSG00000232850	PTGES2-AS1	-	PTGES2 antisense RNA 1 (head to head)	ncRNA
107811	chr18	51196801	51198550	+	0	NA	promoter-TSS (NM_016626)	promoter-TSS (NM_016626)	6	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
80	chr1	295051	295350	+	0	NA	Intergenic	L1ME3E|LINE|L1	-88603	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
213967	chr7	142790351	142790930	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	19670	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
140921	chr2	237715301	237716050	+	0	NA	intron (NM_001137550, intron 3 of 23)	intron (NM_001137550, intron 3 of 23)	23470	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
11757	chr1	92317051	92317230	+	0	NA	intron (NM_024813, intron 6 of 12)	MIRb|SINE|MIR	18081	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
193781	chr6	31374051	31374550	+	0	NA	Intergenic	LTR13|LTR|ERVK	-17121	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
90871	chr17	2376001	2377350	+	0	NA	intron (NM_001346700, intron 18 of 22)	intron (NM_001346700, intron 18 of 22)	24385	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
49968	chr12	42024051	42024450	+	0	NA	Intergenic	Intergenic	120624	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
64814	chr14	35034971	35035130	+	0	NA	Intergenic	Intergenic	-9857	NM_001079519	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
63664	chr14	21042971	21043330	+	0	NA	exon (NM_032572, exon 2 of 2)	exon (NM_032572, exon 2 of 2)	788	NM_032572	84659		NM_032572	ENSG00000165799	RNASE7	RAE1	ribonuclease A family member 7	protein-coding
100866	chr17	64272971	64273330	+	0	NA	Intergenic	Intergenic	-9890	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
117886	chr19	32687521	32687780	+	0	NA	Intergenic	AluSg4|SINE|Alu	-4311	NM_001105570	390916		NM_001105570	ENSG00000213965	NUDT19	RP2	nudix hydrolase 19	protein-coding
144929	chr20	36998451	36999580	+	0	NA	intron (NM_001323281, intron 20 of 20)	intron (NM_001323281, intron 20 of 20)	-47307	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
43032	chr11	74010071	74010700	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-1148	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
222802	chr8	142446751	142446850	+	0	NA	Intergenic	Intergenic	-2849	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
208801	chr7	73608701	73608900	+	0	NA	intron (NR_134541, intron 2 of 15)	intron (NR_134541, intron 2 of 15)	15722	NM_032953	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
175774	chr4	77787801	77788000	+	0	NA	intron (NM_001365006, intron 1 of 11)	MIRb|SINE|MIR	31164	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
163561	chr3	51798351	51798650	+	0	NA	Intergenic	LTR48|LTR|ERV1	-19103	NR_038215	100506840		NR_038213	ENSG00000293437	IQCF4P	IQCF4	IQ motif containing F4, pseudogene	pseudo
69410	chr14	94058151	94058250	+	0	NA	intron (NM_020414, intron 5 of 8).2	L2a|LINE|L2	23002	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
159737	chr3	15858301	15859200	+	0	NA	intron (NM_001349279, intron 1 of 28)	intron (NM_001349279, intron 1 of 28)	1064	NM_015199	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
237319	chrX	118354271	118354630	+	0	NA	intron (NM_001184966, intron 1 of 17)	intron (NM_001184966, intron 1 of 17)	8344	NM_001184965	54521		NM_019045	ENSG00000131725	WDR44	RAB11BP|RPH11|SYM-4	WD repeat domain 44	protein-coding
107317	chr18	45106251	45106950	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-61363	NM_001371319	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
11277	chr1	89124421	89124830	+	0	NA	intron (NM_004120, intron 1 of 10)	intron (NM_004120, intron 1 of 10)	1489	NM_004120	2634		NM_004120	ENSG00000162645	GBP2	-	guanylate binding protein 2	protein-coding
214131	chr7	144289521	144290130	+	0	NA	intron (NR_126022, intron 3 of 4).3	intron (NR_126022, intron 3 of 4).3	-3822	NR_033942	728377		NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor 34, pseudogene	pseudo
133447	chr2	119659871	119660330	+	0	NA	Intergenic	Intergenic	-19067	NM_001105198	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
90178	chr17	333921	334380	+	0	NA	TTS (NR_040011)	TTS (NR_040011)	2631	NR_164141	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
203449	chr7	376221	376680	+	0	NA	Intergenic	CpG	-2975	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
234366	chrX	15748021	15748280	+	0	NA	intron (NM_007220, intron 1 of 7)	LTR9|LTR|ERV1	9880	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
60937	chr13	46320251	46320900	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-22731	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
116118	chr19	17318821	17319280	+	0	NA	intron (NM_024050, intron 4 of 4)	intron (NM_024050, intron 4 of 4)	9487	NM_024050	79016		NM_024050	ENSG00000130311	DDA1	C19orf58|PCIA1	DET1 and DDB1 associated 1	protein-coding
156198	chr22	40286971	40287130	+	0	NA	intron (NM_015088, intron 10 of 20)	AluJr|SINE|Alu	-59450	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
102736	chr17	76238751	76238850	+	0	NA	intron (NM_052916, intron 1 of 18)	intron (NM_052916, intron 1 of 18)	1693	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
131765	chr2	98471851	98472150	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	25990	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
175673	chr4	76985971	76986600	+	0	NA	intron (NM_018243, intron 1 of 9)	intron (NM_018243, intron 1 of 9)	36533	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
185309	chr5	126758351	126759080	+	0	NA	intron (NR_134485, intron 2 of 3)	intron (NR_134485, intron 2 of 3)	17771	NR_134485	102723557		NR_134485	ENSG00000251072	LMNB1-DT	-	LMNB1 divergent transcript	ncRNA
60455	chr13	41020151	41020250	+	0	NA	promoter-TSS (NM_172373)	promoter-TSS (NM_172373)	-884	NM_172373	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
84697	chr16	30795271	30795450	+	0	NA	Intergenic	AluYm1|SINE|Alu	-8155	NM_001345970	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
25684	chr10	8468421	8468680	+	0	NA	Intergenic	(TAACCC)n|Simple_repeat|Simple_repeat	125841	NR_134492	105376398		NR_134492		LOC105376398	-	uncharacterized LOC105376398	ncRNA
1757	chr1	6014151	6014930	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	-11793	NM_172130	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
115975	chr19	17052421	17052880	+	0	NA	intron (NM_001011699, intron 10 of 10)	intron (NM_001011699, intron 10 of 10)	22802	NM_033417	93323		NM_033417	ENSG00000131351	HAUS8	DGT4|HICE1|NY-SAR-48	HAUS augmin like complex subunit 8	protein-coding
78803	chr15	99486421	99486980	+	0	NA	Intergenic	Intergenic	-78717	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
149866	chr21	35400471	35400850	+	0	NA	intron (NR_073512, intron 2 of 2)	intron (NR_073512, intron 2 of 2)	180104	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
45527	chr11	118743651	118744230	+	0	NA	Intergenic	Intergenic	47008	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
75826	chr15	69450151	69450680	+	0	NA	Intergenic	AluJb|SINE|Alu	-2403	NM_001003	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
22963	chr1	226066501	226066980	+	0	NA	intron (NR_002315, intron 3 of 3)	MER5A|DNA|hAT-Charlie	4013	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
88426	chr16	84735801	84737150	+	0	NA	intron (NR_073577, intron 2 of 11)	intron (NR_073577, intron 2 of 11)	36475	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
58066	chr12	124541301	124541500	+	0	NA	intron (NM_001077261, intron 1 of 47)	G-rich|Low_complexity|Low_complexity	26212	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
10127	chr1	59328151	59328600	+	0	NA	intron (NM_001350793, intron 4 of 17)	Tigger1|DNA|TcMar-Tigger	18343	NM_001350792	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
77712	chr15	85694071	85694230	+	0	NA	intron (NM_007200, intron 17 of 36)	intron (NM_007200, intron 17 of 36)	64575	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
91228	chr17	3933371	3933530	+	0	NA	intron (NM_174953, intron 17 of 22)	intron (NM_174953, intron 17 of 22)	-16985	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
85403	chr16	50307371	50307530	+	0	NA	intron (NM_001114, intron 15 of 25)	intron (NM_001114, intron 15 of 25)	14834	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
201468	chr6	148750151	148750450	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	3270	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
105799	chr18	2911701	2912300	+	0	NA	intron (NM_032048, intron 7 of 7)	intron (NM_032048, intron 7 of 7)	34623	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
57182	chr12	121440951	121441780	+	0	NA	intron (NM_001005366, intron 18 of 22)	intron (NM_001005366, intron 18 of 22)	2987	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
235797	chrX	49175421	49175880	+	0	NA	TTS (NM_002668)	TTS (NM_002668)	3752	NM_002668	5355		NM_002668	ENSG00000102007	PLP2	A4|A4LSB	proteolipid protein 2	protein-coding
208665	chr7	73155901	73156550	+	0	NA	promoter-TSS (NM_001382494)	promoter-TSS (NM_001382494)	-776	NM_001382504	643862		NM_001382504	ENSG00000274570	SPDYE10	SPDYE10P	speedy/RINGO cell cycle regulator family member E10	protein-coding
223035	chr8	143345901	143346100	+	0	NA	intron (NM_001258447, intron 1 of 13)	L1ME1|LINE|L1	-11120	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
213355	chr7	135621271	135621650	+	0	NA	intron (NM_001329434, intron 30 of 42)	intron (NM_001329434, intron 30 of 42)	-41054	NM_001130929	647087		NM_001130929	ENSG00000243317	STMP1	C7orf73|Mm47|Mtlbn|PL-5283	short transmembrane mitochondrial protein 1	protein-coding
64037	chr14	22527471	22528200	+	0	NA	Intergenic	AluYa5|SINE|Alu	29227	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
74233	chr15	56732981	56733780	+	0	NA	intron (NM_001002844, intron 1 of 5)	CpG	706	NM_001288589	54816		NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
196671	chr6	44456221	44456580	+	0	NA	Intergenic	Intergenic	20759	NR_039785	100616352		NR_039785	ENSG00000266619	MIR4642	-	microRNA 4642	ncRNA
38031	chr11	35145901	35146460	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	7009	NM_001001391	960		NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECM-III|ECMR-III|H-CAM|HCELL|HUTCH-1|HUTCH-I|Hermes-1|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (IN blood group)	protein-coding
111236	chr19	3514221	3515200	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	-8246	NM_001136197	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
51570	chr12	52607571	52607930	+	0	NA	3' UTR (NM_175068, exon 9 of 9)	3' UTR (NM_175068, exon 9 of 9)	-2101	NR_126005	100127967		NR_126005	ENSG00000257495	KRT73-AS1	-	KRT73 antisense RNA 1	ncRNA
157401	chr22	44823571	44823930	+	0	NA	intron (NM_181335, intron 6 of 11)	intron (NM_181335, intron 6 of 11)	71175	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
153220	chr22	23917701	23917900	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-18870	NR_038911	284889		NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA
127062	chr2	37366621	37367100	+	0	NA	intron (NM_012413, intron 3 of 6)	LTR16A|LTR|ERVL	22230	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
103424	chr17	78248621	78249080	+	0	NA	intron (NR_164160, intron 1 of 1)	intron (NR_164160, intron 1 of 1)	534	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
190443	chr5	179846551	179847250	+	0	NA	intron (NM_016175, intron 3 of 6)	L1MEd|LINE|L1	11917	NM_016175	51149		NM_016175	ENSG00000161010	MRNIP	C5orf45	MRN complex interacting protein	protein-coding
29241	chr10	69098521	69098800	+	0	NA	intron (NM_002727, intron 2 of 2)	intron (NM_002727, intron 2 of 2)	10557	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
176521	chr4	95181521	95181780	+	0	NA	intron (NM_003728, intron 14 of 15)	intron (NM_003728, intron 14 of 15)	90159	NM_001256794	658		NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMD3|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
51621	chr12	52908571	52908730	+	0	NA	intron (NM_001256293, intron 1 of 8)	L1MB8|LINE|L1	-3574	NM_002273	3856		NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
232184	chr9	134186601	134187550	+	0	NA	Intergenic	Intergenic	-22511	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
55629	chr12	107057551	107057850	+	0	NA	intron (NM_004075, intron 1 of 12)	AluJr|SINE|Alu	35849	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
188088	chr5	150217701	150218480	+	0	NA	Intergenic	MIRc|SINE|MIR	28028	NM_014228	6534		NM_014228	ENSG00000011083	SLC6A7	PROT	solute carrier family 6 member 7	protein-coding
184405	chr5	98912371	98912730	+	0	NA	intron (NR_157078, intron 2 of 36)	AluSz6|SINE|Alu	-16012	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
14999	chr1	148147621	148147930	+	0	NA	intron (NM_001385469, intron 1 of 23)	intron (NM_001385469, intron 1 of 23)	4506	NM_001101663	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
149898	chr21	36123021	36123280	+	0	NA	intron (NR_040084, intron 1 of 3)	AluJb|SINE|Alu	3490	NR_040084	100133286		NR_040084	ENSG00000230212	CBR1-AS1	-	CBR1 antisense RNA 1	ncRNA
196358	chr6	43227201	43227630	+	0	NA	intron (NM_006443, intron 1 of 3)	AluSg|SINE|Alu	2066	NM_199184	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
185003	chr5	115179351	115179450	+	0	NA	intron (NM_001017398, intron 1 of 1)	CpG	894	NM_001300752	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
195523	chr6	37259201	37260900	+	0	NA	intron (NM_017772, intron 1 of 12)	intron (NM_017772, intron 1 of 12)	-1895	NR_104443								
201496	chr6	149030271	149030430	+	0	NA	intron (NR_134599, intron 1 of 1)	intron (NR_134599, intron 1 of 1)	2311	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
20014	chr1	185297771	185298230	+	0	NA	3' UTR (NM_006469, exon 15 of 15)	3' UTR (NM_006469, exon 15 of 15)	19243	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
49324	chr12	21677701	21678130	+	0	NA	Intergenic	Intergenic	-20060	NM_001315537	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
408	chr1	1067651	1068000	+	0	NA	non-coding (NR_168433, exon 2 of 5)	non-coding (NR_168433, exon 2 of 5)	1512	NR_168433	105378948		NR_168432		LOC105378948	-	uncharacterized LOC105378948	ncRNA
102113	chr17	75014071	75014480	+	0	NA	intron (NM_001303265, intron 1 of 5)	AluY|SINE|Alu	1605	NM_001545	3396		NM_001545	ENSG00000167862	MRPL58	DS-1|DS1|ICT1|MRP-L58|mL62	mitochondrial ribosomal protein L58	protein-coding
143221	chr20	24968401	24968680	+	0	NA	intron (NM_020531, intron 8 of 8)	intron (NM_020531, intron 8 of 8)	19271	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
142388	chr20	3813521	3814350	+	0	NA	Intergenic	AluJb|SINE|Alu	5441	NR_109859	101929125		NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
210267	chr7	99406251	99406900	+	0	NA	intron (NM_014891, intron 1 of 5)	intron (NM_014891, intron 1 of 5)	2022	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
62863	chr13	110559101	110559680	+	0	NA	intron (NM_017817, intron 1 of 1)	intron (NM_017817, intron 1 of 1)	2332	NM_017817	55647		NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
60306	chr13	40646871	40647380	+	0	NA	intron (NM_002015, intron 1 of 2)	MER34C2|LTR|ERV1	19516	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
181018	chr5	35858981	35860130	+	0	NA	intron (NM_002185, intron 1 of 7)	intron (NM_002185, intron 1 of 7)	2664	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
147400	chr20	58717421	58717880	+	0	NA	Intergenic	Intergenic	24850	NM_024663	79716		NM_024663	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase like 1	protein-coding
137289	chr2	195547321	195547580	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-109508	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
207287	chr7	43993051	43993350	+	0	NA	intron (NR_003655, intron 4 of 15)	MIRc|SINE|MIR	-4668	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
238161	chrX	136810501	136810700	+	0	NA	Intergenic	L1MB1|LINE|L1	-29668	NM_004840	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
230600	chr9	128589571	128589930	+	0	NA	intron (NM_001375310, intron 21 of 57)	AluYj4|SINE|Alu	37163	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
144194	chr20	34270071	34270230	+	0	NA	TTS (NM_001385218)	TTS (NM_001385218)	28727	NM_001672	434		NM_001672	ENSG00000101440	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
61554	chr13	60473671	60474000	+	0	NA	intron (NM_001146070, intron 5 of 13)	LTR13|LTR|ERVK	76615	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
70797	chr14	103535021	103536800	+	0	NA	3' UTR (NM_152307, exon 4 of 4)	3' UTR (NM_152307, exon 4 of 4)	6714	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
130106	chr2	74525821	74526750	+	0	NA	promoter-TSS (NM_133637)	promoter-TSS (NM_133637)	-54	NM_133637	165545		NM_133637	ENSG00000144045	DQX1	-	DEAQ-box RNA dependent ATPase 1	protein-coding
189537	chr5	173894101	173894300	+	0	NA	intron (NM_001308192, intron 1 of 8)	AluJb|SINE|Alu	1149	NM_001308193	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
218336	chr8	42885271	42886030	+	0	NA	intron (NM_001160225, intron 2 of 6)	L1MA9|LINE|L1	10625	NR_039679	100616115		NR_039679	ENSG00000284062	MIR4469	mir-4469	microRNA 4469	ncRNA
173902	chr4	25156721	25156980	+	0	NA	intron (NM_016955, intron 3 of 10)	intron (NM_016955, intron 3 of 10)	3599	NM_016955	51091		NM_016955	ENSG00000109618	SEPSECS	LP|PCH2D|SLA|SLA-p35|SLA/LP|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding
161981	chr3	46349771	46350880	+	0	NA	Intergenic	Intergenic	-3419	NM_001123041	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
228056	chr9	96027001	96027880	+	0	NA	intron (NM_001375291, intron 18 of 18)	CpG	-5629	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
150452	chr21	42486601	42486950	+	0	NA	intron (NM_080860, intron 3 of 8)	Arthur1|DNA|hAT-Tip100	9449	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
39346	chr11	59510971	59511130	+	0	NA	Intergenic	Intergenic	-3863	NM_001004711	390199		NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
7888	chr1	36467101	36467500	+	0	NA	exon (NM_000760, exon 16 of 17)	exon (NM_000760, exon 16 of 17)	-2916	NM_031280	64960		NM_031280	ENSG00000116898	MRPS15	DC37|MPR-S15|RPMS15|S15mt|uS15m	mitochondrial ribosomal protein S15	protein-coding
224916	chr9	32568451	32568750	+	0	NA	intron (NM_001199987, intron 1 of 2)	Tigger1|DNA|TcMar-Tigger	4559	NM_002493	4712		NM_002493	ENSG00000165264	NDUFB6	B17|CI	NADH:ubiquinone oxidoreductase subunit B6	protein-coding
34753	chr11	186021	186780	+	0	NA	Intergenic	Intergenic	-6678	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
201837	chr6	150079371	150080000	+	0	NA	Intergenic	Intergenic	-10564	NM_024518	79465		NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
20837	chr1	201539821	201540280	+	0	NA	Intergenic	CpG	20146	NR_026667	376693		NR_026667		RPS10P7	RPS10_2_147|lnc-MCEI	ribosomal protein S10 pseudogene 7	pseudo
131839	chr2	98666071	98666230	+	0	NA	intron (NM_012214, intron 4 of 15)	L2a|LINE|L2	-2677	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
100898	chr17	64399401	64400100	+	0	NA	Intergenic	ORSL|DNA|hAT-Tip100	-8890	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
110064	chr19	1492571	1492980	+	0	NA	intron (NM_138393, intron 1 of 4)	intron (NM_138393, intron 1 of 4)	1594	NM_138393	92840		NM_138393	ENSG00000115255	REEP6	C19orf32|DP1L1|REEP6.1|REEP6.2|RP77|TB1|TB2L1|Yip2f	receptor accessory protein 6	protein-coding
107084	chr18	35029201	35030100	+	0	NA	intron (NM_001143826, intron 2 of 7)	intron (NM_001143826, intron 2 of 7)	-11763	NR_046177	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
10099	chr1	58943771	58944380	+	0	NA	Intergenic	Intergenic	-76401	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
12651	chr1	109261171	109261330	+	0	NA	exon (NM_001408, exon 3 of 34)	exon (NM_001408, exon 3 of 34)	11711	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
86804	chr16	67833221	67834530	+	0	NA	5' UTR (NM_025082, exon 4 of 16)	5' UTR (NM_025082, exon 4 of 16)	-8445	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
227969	chr9	95092151	95092450	+	0	NA	Intergenic	Intergenic	-6206	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA
164051	chr3	53709971	53710390	+	0	NA	intron (NM_001128839, intron 9 of 45)	intron (NM_001128839, intron 9 of 45)	136239	NM_018397	55349		NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
117507	chr19	20037551	20037850	+	0	NA	intron (NM_033196, intron 1 of 3)	intron (NM_033196, intron 1 of 3)	1555	NM_001077349	91120		NM_033196	ENSG00000197124	ZNF682	BC39498_3	zinc finger protein 682	protein-coding
168911	chr3	152336501	152336850	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	4315	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
77224	chr15	81155621	81155880	+	0	NA	Intergenic	Intergenic	21480	NM_173528	161502		NM_173528	ENSG00000156206	CFAP161	C15orf26	cilia and flagella associated protein 161	protein-coding
234398	chrX	16718221	16718480	+	0	NA	Intergenic	L1MB2|LINE|L1	-1262	NM_032796	94056		NM_032796	ENSG00000169895	SYAP1	BSTA|PRO3113	synapse associated protein 1	protein-coding
230950	chr9	129420921	129421650	+	0	NA	Intergenic	L2b|LINE|L2	-67375	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
8548	chr1	41238601	41239180	+	0	NA	intron (NM_012236, intron 1 of 14)	intron (NM_012236, intron 1 of 14)	3416	NM_001350667	22955		NM_012236	ENSG00000010803	SCMH1	Scml3	Scm polycomb group protein homolog 1	protein-coding
61042	chr13	48234951	48236000	+	0	NA	intron (NM_021999, intron 1 of 5)	intron (NM_021999, intron 1 of 5)	2269	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
173652	chr4	13543301	13543550	+	0	NA	intron (NM_001189, intron 1 of 1)	CpG	1083	NM_001189	579		NM_001189	ENSG00000109705	NKX3-2	BAPX1|NKX3.2|NKX3B|SMMD	NK3 homeobox 2	protein-coding
24914	chr10	1060801	1061080	+	0	NA	intron (NM_014023, intron 1 of 13)	Tigger3a|DNA|TcMar-Tigger	-4236	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
3184	chr1	13710771	13711130	+	0	NA	intron (NM_015866, intron 1 of 8)	AluY|SINE|Alu	6095	NM_012231	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
156166	chr22	40212221	40212800	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	34585	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
37414	chr11	17278921	17279250	+	0	NA	intron (NM_001352672, intron 1 of 14)	AluSq2|SINE|Alu	2115	NM_001352672	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
237013	chrX	102516371	102517230	+	0	NA	promoter-TSS (NM_021992)	promoter-TSS (NM_021992)	-61	NM_021992	11013		NM_021992	ENSG00000158164	TMSB15A	TMSB15|TMSB15B|TMSL8|TMSNB|Tb15|TbNB	thymosin beta 15A	protein-coding
64489	chr14	24314321	24315200	+	0	NA	5' UTR (NM_181657, exon 1 of 2)	5' UTR (NM_181657, exon 1 of 2)	1653	NM_181657	1241		NM_181657	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
213948	chr7	142710471	142710830	+	0	NA	intron (NM_001130026, intron 10 of 10)	MIRb|SINE|MIR	-38822	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
136541	chr2	177331301	177331500	+	0	NA	intron (NR_026966, intron 5 of 8)	AluSz|SINE|Alu	-17518	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
3297	chr1	15344951	15345330	+	0	NA	exon (NM_052929, exon 16 of 31)	exon (NM_052929, exon 16 of 31)	-1257	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
21384	chr1	205227471	205228300	+	0	NA	promoter-TSS (NM_014858)	promoter-TSS (NM_014858)	-61	NM_014858	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
48411	chr12	9666371	9666830	+	0	NA	Intergenic	Intergenic	-3113	NM_001197318	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
222619	chr8	141059601	141060230	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-57836	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
101250	chr17	66301951	66303750	+	0	NA	5' UTR (NM_002737, exon 1 of 17)	5' UTR (NM_002737, exon 1 of 17)	237	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
59920	chr13	31044201	31045350	+	0	NA	Intergenic	Intergenic	112119	NM_001353389	122046		NM_152325	ENSG00000175664	TEX26	C13orf26	testis expressed 26	protein-coding
151454	chr21	46180521	46180780	+	0	NA	intron (NM_032261, intron 1 of 3)	intron (NM_032261, intron 1 of 3)	3809	NM_001142854	84221		NM_032261	ENSG00000160284	SPATC1L	C21orf56	spermatogenesis and centriole associated 1 like	protein-coding
9220	chr1	45683271	45684550	+	0	NA	intron (NM_021639, intron 2 of 12)	AluJb|SINE|Alu	2623	NM_021639	60313		NM_021639	ENSG00000159592	GPBP1L1	SP192	GC-rich promoter binding protein 1 like 1	protein-coding
88847	chr16	87588801	87589050	+	0	NA	Intergenic	Intergenic	-12910	NR_073379	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
15268	chr1	149671801	149672180	+	0	NA	intron (NR_111950, intron 8 of 8)	MIR3|SINE|MIR	-29114	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
125022	chr2	9578901	9579450	+	0	NA	Intergenic	AluJb|SINE|Alu	-23345	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
178880	chr4	155582971	155583380	+	0	NA	Intergenic	Intergenic	-83673	NM_001379666	2982		NM_000856	ENSG00000164116	GUCY1A1	GC-S-alpha-1|GC-SA3|GCS-alpha-3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6	guanylate cyclase 1 soluble subunit alpha 1	protein-coding
66366	chr14	61469901	61470100	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	100194	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
39508	chr11	61060751	61062030	+	0	NA	Intergenic	Intergenic	-32573	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
44023	chr11	95066751	95068040	+	0	NA	exon (NM_032102, exon 1 of 1)	exon (NM_032102, exon 1 of 1)	518	NR_103726	10929		NM_032102	ENSG00000263465	SRSF8	DSM-1|SFRS2B|SRP46	serine and arginine rich splicing factor 8	protein-coding
111062	chr19	3132751	3134080	+	0	NA	Intergenic	Intergenic	-2618	NM_002068	2769		NM_002068	ENSG00000060558	GNA15	GNA16|HG1L	G protein subunit alpha 15	protein-coding
177314	chr4	109676901	109677150	+	0	NA	intron (NM_017918, intron 4 of 7)	MSTD-int|LTR|ERVL-MaLR	26420	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
105777	chr18	2807801	2808780	+	0	NA	Intergenic	L1M4b|LINE|L1	-38716	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
167783	chr3	133425901	133426250	+	0	NA	TTS (NR_135277)	TTS (NR_135277)	26019	NM_003571	8419		NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding
235779	chrX	49079721	49080950	+	0	NA	promoter-TSS (NM_001029896)	promoter-TSS (NM_001029896)	-448	NM_001029896	11152		NM_007075	ENSG00000196998	WDR45	JM5|NBIA4|NBIA5|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
23129	chr1	226699871	226700030	+	0	NA	intron (NM_002221, intron 2 of 7)	MLT2A1|LTR|ERVL	-24882	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
75447	chr15	65821271	65821650	+	0	NA	Intergenic	L1ME3|LINE|L1	-29167	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
171810	chr4	657271	658200	+	0	NA	intron (NM_001350155, intron 6 of 17)	intron (NM_001350155, intron 6 of 17)	4558	NM_001350154	5158		NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|GMP-PDEbeta|PDEB|RP40|rd1	phosphodiesterase 6B	protein-coding
65533	chr14	51917971	51918330	+	0	NA	intron (NR_126331, intron 1 of 2)	intron (NR_126331, intron 1 of 2)	421	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
143433	chr20	30246351	30246450	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	40137	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
27107	chr10	27545701	27546300	+	0	NA	Intergenic	AluJo|SINE|Alu	41696	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
166467	chr3	114230271	114230800	+	0	NA	Intergenic	Intergenic	7043	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
7962	chr1	37698871	37699630	+	0	NA	intron (NM_018101, intron 5 of 10)	intron (NM_018101, intron 5 of 10)	6734	NM_001256875	55143		NM_018101	ENSG00000134690	CDCA8	BOR|BOREALIN|DasraB|MESRGP	cell division cycle associated 8	protein-coding
197563	chr6	79663721	79663980	+	0	NA	intron (NM_031469, intron 1 of 3)	L1PA6|LINE|L1	32521	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
104651	chr17	81462801	81463000	+	0	NA	exon (NM_001291324, exon 28 of 29)	exon (NM_001291324, exon 28 of 29)	-11712	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
225929	chr9	40634901	40635180	+	0	NA	Intergenic	Intergenic	135059	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
76688	chr15	75736951	75737350	+	0	NA	intron (NR_024595, intron 3 of 4)	MIRc|SINE|MIR	2927	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
211969	chr7	112793821	112794800	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-3917	NM_001287497	64418		NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
165394	chr3	95721921	95722250	+	0	NA	Intergenic	UCON1|Unknown|Unknown	-38892	NR_077228	100287639		NR_077228	ENSG00000293294	MTHFD2P1	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1	pseudo
112750	chr19	7390101	7390500	+	0	NA	intron (NM_001367823, intron 10 of 28)	AluSz|SINE|Alu	-4845	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
40892	chr11	65126451	65127100	+	0	NA	TTS (NM_032431)	TTS (NM_032431)	3203	NR_106809	102465449		NR_106809	ENSG00000284489	MIR6751	hsa-mir-6751	microRNA 6751	ncRNA
4425	chr1	21261771	21262130	+	0	NA	intron (NM_001397, intron 4 of 18)	L2c|LINE|L2	17665	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
40923	chr11	65216651	65217030	+	0	NA	intron (NR_033396, intron 2 of 9)	intron (NR_033396, intron 2 of 9)	3000	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
104901	chr17	81893971	81894130	+	0	NA	intron (NM_001002249, intron 2 of 3)	AluSz6|SINE|Alu	2123	NM_001289416	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
169413	chr3	160999321	160999580	+	0	NA	intron (NM_139245, intron 2 of 3)	intron (NM_139245, intron 2 of 3)	105282	NM_001349161	8706		NM_003781	ENSG00000169255	B3GALNT1	B3GALANT1|B3GALT3|GLCT3|GLOB|Gb4Cer|P1|beta3Gal-T3|galT3	beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group)	protein-coding
33412	chr10	118658171	118659530	+	0	NA	Intergenic	L1PB1|LINE|L1	-63202	NM_004248	2834		NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
170185	chr3	183700721	183701180	+	0	NA	intron (NM_001351371, intron 1 of 21)	L1MB7|LINE|L1	3132	NM_001351370	55689		NM_018023	ENSG00000163872	YEATS2	FAME4	YEATS domain containing 2	protein-coding
222787	chr8	142029151	142029650	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-146939	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
121507	chr19	47181601	47181800	+	0	NA	intron (NM_001145713, intron 6 of 6)	AluSx1|SINE|Alu	-45242	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
60548	chr13	41471701	41474030	+	0	NA	Intergenic	L1MA2|LINE|L1	15315	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
69657	chr14	97975901	97976300	+	0	NA	intron (NR_152748, intron 1 of 2)	intron (NR_152748, intron 1 of 2)	2024	NR_015430	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
80864	chr16	3569771	3570330	+	0	NA	intron (NR_075083, intron 1 of 20)	MIRb|SINE|MIR	7353	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
73222	chr15	41619401	41620100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40662	NM_001164273	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
153118	chr22	23695921	23696790	+	0	NA	promoter-TSS (NM_001329425)	promoter-TSS (NM_001329425)	-61	NM_001329425	266747		NM_153615	ENSG00000159496	RGL4	Rgr	ral guanine nucleotide dissociation stimulator like 4	protein-coding
113198	chr19	8443471	8443700	+	0	NA	Intergenic	Charlie12|DNA|hAT-Charlie	-1390	NM_005968	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
167684	chr3	130110951	130113000	+	0	NA	promoter-TSS (NR_024252)	promoter-TSS (NR_024252)	268	NR_146653	105374104		NR_146653	ENSG00000249846	LINC02021	-	long intergenic non-protein coding RNA 2021	ncRNA
145916	chr20	46000471	46001230	+	0	NA	Intergenic	Intergenic	-8058	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
16693	chr1	155205801	155206030	+	0	NA	intron (NM_007112, intron 2 of 22)	intron (NM_007112, intron 2 of 22)	1982	NM_001252608	7059		NM_007112	ENSG00000169231	THBS3	TSP3	thrombospondin 3	protein-coding
166838	chr3	123026021	123026430	+	0	NA	intron (NR_046079, intron 1 of 22)	intron (NR_046079, intron 1 of 22)	1538	NM_001031702	54437		NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
137853	chr2	200815501	200815850	+	0	NA	exon (NM_001321693, exon 3 of 11)	exon (NM_001321693, exon 3 of 11)	3289	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
121886	chr19	48361051	48361350	+	0	NA	intron (NM_001303539, intron 2 of 6)	MIRb|SINE|MIR	2740	NM_001303538	55260		NM_018273	ENSG00000161558	TMEM143	-	transmembrane protein 143	protein-coding
96470	chr17	40245671	40246350	+	0	NA	intron (NM_133264, intron 1 of 7)	intron (NM_133264, intron 1 of 7)	26706	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
47034	chr12	421151	421500	+	0	NA	intron (NM_032358, intron 5 of 12)	intron (NM_032358, intron 5 of 12)	19681	NM_032358	84318		NM_032358	ENSG00000120647	CCDC77	-	coiled-coil domain containing 77	protein-coding
150627	chr21	43385651	43385750	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-23351	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
92283	chr17	8075951	8076350	+	0	NA	intron (NM_001139, intron 11 of 14)	intron (NM_001139, intron 11 of 14)	11566	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
23097	chr1	226668251	226668550	+	0	NA	intron (NR_103784, intron 1 of 1)	MER97d|DNA|hAT-Tip100	6668	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
67662	chr14	73113371	73113930	+	0	NA	intron (NM_021239, intron 17 of 18)	AluSq2|SINE|Alu	-22857	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
230878	chr9	129185851	129186230	+	0	NA	Intergenic	Intergenic	-7779	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
225194	chr9	34051801	34052000	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2701	NM_001370059	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
12359	chr1	101238601	101240350	+	0	NA	exon (NM_001400, exon 2 of 2)	exon (NM_001400, exon 2 of 2)	2456	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
13839	chr1	117636521	117637180	+	0	NA	Intergenic	Intergenic	30802	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
140558	chr2	233293351	233293850	+	0	NA	intron (NM_001190266, intron 17 of 17).2	intron (NM_001190266, intron 17 of 17).2	4924	NR_003006	677772		NR_003006	ENSG00000251791	SCARNA6	U88	small Cajal body-specific RNA 6	ncRNA
186162	chr5	134185321	134185580	+	0	NA	Intergenic	L2a|LINE|L2	-8417	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
213589	chr7	139381401	139382030	+	0	NA	intron (NM_016019, intron 2 of 9)	AluSx|SINE|Alu	21821	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
208350	chr7	66505771	66507100	+	0	NA	Intergenic	Intergenic	12744	NR_134571	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
133004	chr2	111605721	111606050	+	0	NA	Intergenic	Intergenic	-110724	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
97080	chr17	42390821	42391450	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2693	NM_001384989	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
128816	chr2	62787451	62787630	+	0	NA	intron (NM_001142616, intron 5 of 22)	intron (NM_001142616, intron 5 of 22)	80643	NM_001354217	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
104378	chr17	81026321	81027000	+	0	NA	Intergenic	Intergenic	8059	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
81202	chr16	4493571	4493730	+	0	NA	intron (NM_001286269, intron 2 of 6)	intron (NM_001286269, intron 2 of 6)	-2169	NM_001286270	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
172189	chr4	1242921	1243830	+	0	NA	intron (NM_001377192, intron 1 of 9)	intron (NM_001377192, intron 1 of 9)	5353	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
173427	chr4	8204571	8205130	+	0	NA	intron (NM_001318480, intron 1 of 17)	intron (NM_001318480, intron 1 of 17)	5560	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
113166	chr19	8387651	8388650	+	0	NA	intron (NR_038237, intron 1 of 2)	LTR54|LTR|ERV1	1230	NR_049795	100847049		NR_049795	ENSG00000265390	MIR4999	mir-4999	microRNA 4999	ncRNA
213660	chr7	139829021	139829880	+	0	NA	exon (NM_001061, exon 1 of 13)	exon (NM_001061, exon 1 of 13)	186	NM_001366538	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
199108	chr6	111680951	111681250	+	0	NA	intron (NM_001370529, intron 10 of 11)	AluSx|SINE|Alu	-74826	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
180456	chr5	10637471	10637830	+	0	NA	intron (NM_001164440, intron 2 of 3)	intron (NM_001164440, intron 2 of 3)	73580	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
133331	chr2	113902771	113902930	+	0	NA	intron (NM_001277140, intron 1 of 11)	AluSx1|SINE|Alu	-11858	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
50757	chr12	49020871	49021030	+	0	NA	3' UTR (NM_003482, exon 55 of 55)	3' UTR (NM_003482, exon 55 of 55)	-2174	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
128531	chr2	60793921	60794530	+	0	NA	intron (NM_022894, intron 19 of 21)	intron (NM_022894, intron 19 of 21)	37957	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
92076	chr17	7524021	7524430	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-24833	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
102532	chr17	75821351	75821450	+	0	NA	intron (NM_001080419, intron 13 of 15)	intron (NM_001080419, intron 13 of 15)	23004	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
115641	chr19	16109301	16109950	+	0	NA	Intergenic	AluJr|SINE|Alu	-2264	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
233207	chr9	137221601	137222350	+	0	NA	promoter-TSS (NM_031297)	promoter-TSS (NM_031297)	-652	NM_031297	727800		NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
103209	chr17	77477471	77478080	+	0	NA	intron (NM_001113495, intron 1 of 9)	intron (NM_001113495, intron 1 of 9)	2140	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
28195	chr10	44864321	44865380	+	0	NA	intron (NR_033842, intron 2 of 7)	CpG	-46466	NM_001345926	643236		NM_001123376	ENSG00000187783	TMEM72	C10orf127|KSP37	transmembrane protein 72	protein-coding
148844	chr21	8408411	8408880	+	0	NA	intron (NR_038958, intron 5 of 6).2	AluSp|SINE|Alu	11719	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
116220	chr19	17515121	17515800	+	0	NA	intron (NM_012088, intron 1 of 4)	intron (NM_012088, intron 1 of 4)	-3571	NR_147835	100507551		NR_147835	ENSG00000269439	PGLS-DT	-	PGLS divergent transcript	ncRNA
55321	chr12	103928801	103931630	+	0	NA	promoter-TSS (NR_027249)	promoter-TSS (NR_027249)	-4	NR_027249	253724		NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
51329	chr12	51347951	51348250	+	0	NA	Intergenic	Intergenic	-1421	NM_001971	1990		NM_001971	ENSG00000139610	CELA1	ELA1	chymotrypsin like elastase 1	protein-coding
220615	chr8	100926021	100927250	+	0	NA	intron (NM_001135702, intron 2 of 5)	AluSx1|SINE|Alu	23936	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
142626	chr20	5613351	5613600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2469	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
109558	chr19	884451	884830	+	0	NA	intron (NM_005481, intron 6 of 15)	intron (NM_005481, intron 6 of 15)	8547	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
177087	chr4	108062301	108062700	+	0	NA	intron (NM_001130714, intron 9 of 9)	L2|LINE|L2	57836	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
125944	chr2	25202201	25202800	+	0	NA	Intergenic	Intergenic	-1813	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
73675	chr15	44737271	44737530	+	0	NA	intron (NM_080745, intron 1 of 5).2	UCON74|DNA?|DNA?	872	NM_001301145	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
196945	chr6	52598201	52598500	+	0	NA	Intergenic	Intergenic	21052	NR_103447	401264		NR_103446	ENSG00000225791	TRAM2-AS1	-	TRAM2 antisense RNA 1 (head to head)	ncRNA
194804	chr6	34239771	34239930	+	0	NA	promoter-TSS (NR_106893)	promoter-TSS (NR_106893)	-823	NR_106893	102465502		NR_106893	ENSG00000276404	MIR6835	hsa-mir-6835	microRNA 6835	ncRNA
28160	chr10	43586851	43586950	+	0	NA	Intergenic	MER9a3|LTR|ERVK	-12282	NM_001099283	8187		NM_005674	ENSG00000196793	ZNF239	HOK-2|MOK2	zinc finger protein 239	protein-coding
36523	chr11	6477651	6478150	+	0	NA	intron (NM_001370411, intron 6 of 7)	intron (NM_001370411, intron 6 of 7)	3431	NM_001376564	23647		NM_012402	ENSG00000132254	ARFIP2	POR1	ADP ribosylation factor interacting protein 2	protein-coding
131476	chr2	96482901	96483100	+	0	NA	Intergenic	Intergenic	22357	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
28408	chr10	47743271	47744200	+	0	NA	promoter-TSS (NR_134489)	promoter-TSS (NR_134489)	36	NR_134489	102724593		NR_134489		LOC102724593	-	uncharacterized LOC102724593	ncRNA
134155	chr2	134231051	134231630	+	0	NA	intron (NM_001371457, intron 1 of 16)	L1MB8|LINE|L1	-22732	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
87441	chr16	70742821	70743230	+	0	NA	intron (NM_001351157, intron 12 of 17)	LTR12|LTR|ERV1	-12070	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
127236	chr2	38666601	38668130	+	0	NA	intron (NM_138801, intron 1 of 6)	intron (NM_138801, intron 1 of 6)	1251	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
37889	chr11	34052001	34052800	+	0	NA	intron (NM_203364, intron 1 of 17)	CpG	669	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
47817	chr12	6587701	6588050	+	0	NA	exon (NM_001363606, exon 24 of 40)	exon (NM_001363606, exon 24 of 40)	-6266	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
73714	chr15	45134271	45134430	+	0	NA	intron (NM_175940, intron 4 of 33)	intron (NM_175940, intron 4 of 33)	4356	NM_017434	53905		NM_017434	ENSG00000137857	DUOX1	LNOX1|NOXEF1|THOX1	dual oxidase 1	protein-coding
195090	chr6	35587251	35587550	+	0	NA	intron (NM_001145777, intron 6 of 6)	intron (NM_001145777, intron 6 of 6)	-74504	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
77516	chr15	84682771	84682930	+	0	NA	intron (NM_001271921, intron 2 of 4)	intron (NM_001271921, intron 2 of 4)	-24651	NM_021077	4828		NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
22072	chr1	211339371	211339930	+	0	NA	intron (NM_001319207, intron 1 of 10)	intron (NM_001319207, intron 1 of 10)	-6714	NM_145759	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
53184	chr12	59637521	59637780	+	0	NA	intron (NM_001270622, intron 1 of 5)	MER39|LTR|ERV1	41621	NM_001270622	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
220488	chr8	100494201	100496000	+	0	NA	Intergenic	Intergenic	64659	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
45170	chr11	117225051	117225630	+	0	NA	intron (NM_004716, intron 6 of 16)	AluSx1|SINE|Alu	6733	NM_004716	9159		NM_004716	ENSG00000160613	PCSK7	LPC|PC7|PC8|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding
169295	chr3	158573771	158574130	+	0	NA	intron (NM_001378851, intron 2 of 6)	AluJb|SINE|Alu	2756	NM_001369782	4291		NM_022443	ENSG00000178053	MLF1	-	myeloid leukemia factor 1	protein-coding
5433	chr1	25567971	25568330	+	0	NA	3' UTR (NM_015627, exon 9 of 9)	3' UTR (NM_015627, exon 9 of 9)	24544	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
178752	chr4	153205101	153206100	+	0	NA	intron (NM_001375489, intron 1 of 12)	intron (NM_001375489, intron 1 of 12)	1157	NM_001375512	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
96609	chr17	40549651	40550350	+	0	NA	Intergenic	Intergenic	10394	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
186078	chr5	134098371	134098600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-16196	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
25643	chr10	8238921	8239450	+	0	NA	Intergenic	Intergenic	29120	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
46991	chr12	66751	67380	+	0	NA	exon (NM_001170738, exon 1 of 14)	exon (NM_001170738, exon 1 of 14)	298	NM_001170738	440073		NM_015232	ENSG00000120645	IQSEC3	-	IQ motif and Sec7 domain ArfGEF 3	protein-coding
18539	chr1	162071771	162071930	+	0	NA	intron (NM_014697, intron 1 of 9)	intron (NM_014697, intron 1 of 9)	2159	NM_001164757	9722		NM_014697	ENSG00000198929	NOS1AP	6330408P19Rik|CAPON|NPHS22	nitric oxide synthase 1 adaptor protein	protein-coding
145662	chr20	44963671	44964530	+	0	NA	non-coding (NR_038341, exon 3 of 3)	non-coding (NR_038341, exon 3 of 3)	2358	NR_038341	100505826		NR_038341	ENSG00000227477	STK4-DT	STK4-AS1	STK4 divergent transcript	ncRNA
136325	chr2	175154571	175154930	+	0	NA	intron (NR_045772, intron 1 of 14)	Tigger3c|DNA|TcMar-Tigger	12959	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
29812	chr10	72305271	72306130	+	0	NA	Intergenic	Plat_L3|LINE|CR1	31776	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
133496	chr2	119943121	119943600	+	0	NA	intron (NM_002830, intron 15 of 26)	intron (NM_002830, intron 15 of 26)	-69717	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
122098	chr19	48750871	48751250	+	0	NA	exon (NM_000148, exon 4 of 4)	exon (NM_000148, exon 4 of 4)	1581	NM_001384359	2523		NM_000148	ENSG00000174951	FUT1	H|HH|HSC	fucosyltransferase 1 (H blood group)	protein-coding
8684	chr1	41955371	41955650	+	0	NA	intron (NR_038261, intron 1 of 3)	intron (NR_038261, intron 1 of 3)	-36588	NM_001127714	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
18768	chr1	167507771	167507930	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	10679	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
51127	chr12	50106021	50106550	+	0	NA	intron (NM_005276, intron 3 of 7)	intron (NM_005276, intron 3 of 7)	2277	NM_005276	2819		NM_005276	ENSG00000167588	GPD1	GPD-C|GPDH-C|HTGTI	glycerol-3-phosphate dehydrogenase 1	protein-coding
194037	chr6	31842101	31842300	+	0	NA	Intergenic	AluSp|SINE|Alu	5124	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
31804	chr10	98443501	98443700	+	0	NA	intron (NM_001311345, intron 2 of 18)	intron (NM_001311345, intron 2 of 18)	-2721	NR_134454	101927278		NR_134451	ENSG00000287261	HPS1-AS1	-	HPS1 antisense RNA 1	ncRNA
231424	chr9	131232571	131232730	+	0	NA	intron (NM_001318325, intron 10 of 10)	intron (NM_001318325, intron 10 of 10)	42511	NM_001318325	8021		NM_005085	ENSG00000126883	NUP214	CAIN|CAN|IIAE9	nucleoporin 214	protein-coding
108423	chr18	69947201	69948130	+	0	NA	5' UTR (NM_001303618, exon 1 of 6)	5' UTR (NM_001303618, exon 1 of 6)	208	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
10570	chr1	67274651	67274950	+	0	NA	Intergenic	Intergenic	-32564	NR_047584	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
227806	chr9	93184901	93186100	+	0	NA	exon (NM_006648, exon 1 of 29)	exon (NM_006648, exon 1 of 29)	570	NM_006648	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
46782	chr11	130001051	130004430	+	0	NA	promoter-TSS (NM_001367893)	promoter-TSS (NM_001367893)	95	NM_001367894	56980		NM_020228	ENSG00000170325	PRDM10	BHD2|PFM7|TRIS	PR/SET domain 10	protein-coding
189425	chr5	172840321	172840580	+	0	NA	intron (NM_001031711, intron 1 of 9)	intron (NM_001031711, intron 1 of 9)	6199	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
210248	chr7	99388701	99389230	+	0	NA	intron (NM_005720, intron 4 of 9)	AluSx|SINE|Alu	14235	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
171204	chr3	195715771	195716380	+	0	NA	Intergenic	AluSx|SINE|Alu	-4807	NM_152673	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
102905	chr17	76556071	76556230	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-1614	NR_038110	100507246		NR_038108	ENSG00000163597	SNHG16	ELNAT1|Nbla10727|Nbla12061|ncRAN	small nucleolar RNA host gene 16	ncRNA
20638	chr1	199859571	199859730	+	0	NA	Intergenic	Intergenic	-168060	NM_003822	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
62425	chr13	99305271	99305430	+	0	NA	intron (NM_004951, intron 1 of 1)	intron (NM_004951, intron 1 of 1)	2049	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
112882	chr19	7619151	7619250	+	0	NA	TTS (NM_020196)	TTS (NM_020196)	1761	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
62373	chr13	99231771	99232480	+	0	NA	intron (NR_026644, intron 1 of 8)	L1MC5a|LINE|L1	26303	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
44393	chr11	103069101	103069600	+	0	NA	intron (NM_001318741, intron 3 of 6)	L1MDa|LINE|L1	22810	NM_032299	84259		NM_032299	ENSG00000137692	DCUN1D5	DCNL5|SCCRO5	defective in cullin neddylation 1 domain containing 5	protein-coding
99816	chr17	52158751	52158850	+	0	NA	promoter-TSS (NM_020178)	promoter-TSS (NM_020178)	-86	NM_020178	56934		NM_020178	ENSG00000154975	CA10	CA-RPX|CARPX|HUCEP-15	carbonic anhydrase 10	protein-coding
235746	chrX	48948201	48948600	+	0	NA	intron (NM_001136159, intron 1 of 8)	intron (NM_001136159, intron 1 of 8)	9207	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
52630	chr12	56272071	56272580	+	0	NA	3' UTR (NM_004077, exon 11 of 11)	3' UTR (NM_004077, exon 11 of 11)	4999	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
2426	chr1	9596951	9597250	+	0	NA	intron (NM_001130924, intron 3 of 10)	intron (NM_001130924, intron 3 of 10)	8189	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
159312	chr3	13007751	13008100	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-20824	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
119392	chr19	40229051	40229150	+	0	NA	Intergenic	L1MC4|LINE|L1	-2411	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
89973	chr16	89823171	89823330	+	0	NA	Intergenic	Intergenic	-5225	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
107732	chr18	50194301	50194500	+	0	NA	intron (NM_001080467, intron 1 of 39)	CpG	747	NM_001080467	4645		NM_001080467	ENSG00000167306	MYO5B	DIAR2|MVID1|PFIC10	myosin VB	protein-coding
50277	chr12	46359851	46360200	+	0	NA	3' UTR (NM_018976, exon 16 of 16)	3' UTR (NM_018976, exon 16 of 16)	12748	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
102655	chr17	76072001	76073100	+	0	NA	promoter-TSS (NM_014230)	promoter-TSS (NM_014230)	-24	NR_048541	6730		NM_014230	ENSG00000167881	SRP68	SCN10	signal recognition particle 68	protein-coding
12157	chr1	100268121	100268380	+	0	NA	exon (NM_003729, exon 3 of 11)	exon (NM_003729, exon 3 of 11)	2034	NM_003729	8634		NM_003729	ENSG00000137996	RTCA	RPC|RTC1|RTCD1	RNA 3'-terminal phosphate cyclase	protein-coding
203839	chr7	1444051	1444150	+	0	NA	intron (NM_182924, intron 6 of 16)	CpG	15370	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
133837	chr2	128090721	128091980	+	0	NA	non-coding (NR_027671, exon 1 of 41)	non-coding (NR_027671, exon 1 of 41)	150	NR_027671	56886		NM_020120	ENSG00000136731	UGGT1	HUGT1|UGCGL1|UGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding
7293	chr1	32395801	32396100	+	0	NA	Intergenic	L2a|LINE|L2	-1509	NM_001143889	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
9131	chr1	45394251	45394950	+	0	NA	intron (NM_007170, intron 3 of 10)	MER5A1|DNA|hAT-Charlie	-54130	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
203765	chr7	1193601	1194100	+	0	NA	Intergenic	Intergenic	33065	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
117550	chr19	21025601	21025800	+	0	NA	intron (NM_025189, intron 2 of 4)	AluSx1|SINE|Alu	5043	NM_025189	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
111178	chr19	3366351	3367500	+	0	NA	intron (NM_001245002, intron 1 of 10)	CpG	342	NM_001245004	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
207051	chr7	39623251	39624950	+	0	NA	intron (NM_005402, intron 1 of 4)	CpG	528	NM_005402	5898		NM_005402	ENSG00000006451	RALA	HINCONS|RAL	RAS like proto-oncogene A	protein-coding
6279	chr1	27599071	27599680	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	4119	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
4477	chr1	21436821	21437680	+	0	NA	Intergenic	Intergenic	-2887	NM_001377492	84224		NM_032264	ENSG00000142794	NBPF3	AE2	NBPF member 3	protein-coding
100909	chr17	64456071	64456930	+	0	NA	intron (NM_001291316, intron 3 of 8)	intron (NM_001291316, intron 3 of 8)	7385	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
230907	chr9	129256851	129257150	+	0	NA	Intergenic	Intergenic	-25416	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
124117	chr19	55665101	55665900	+	0	NA	intron (NM_007279, intron 7 of 11)	CpG	-9695	NM_001321263	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
131449	chr2	96325801	96326550	+	0	NA	promoter-TSS (NM_001324490)	promoter-TSS (NM_001324490)	-22	NM_001324490	150771		NM_178495	ENSG00000198885	ITPRIPL1	D1B|KIAA1754L	ITPRIP like 1	protein-coding
201447	chr6	148146651	148146980	+	0	NA	Intergenic	Intergenic	-125513	NM_001346505	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
194210	chr6	32184851	32184950	+	0	NA	promoter-TSS (NM_001206936)	promoter-TSS (NM_001206936)	-578	NM_001206929	177		NM_001136	ENSG00000204305	AGER	RAGE|SCARJ1|sRAGE	advanced glycosylation end-product specific receptor	protein-coding
229791	chr9	125243101	125243850	+	0	NA	Intergenic	Intergenic	-2132	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
33635	chr10	119662821	119663080	+	0	NA	intron (NM_004281, intron 1 of 3)	AluY|SINE|Alu	11570	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
119143	chr19	39379871	39380230	+	0	NA	exon (NM_001384584, exon 11 of 15)	exon (NM_001384584, exon 11 of 15)	11056	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
55091	chr12	97658951	97659050	+	0	NA	Intergenic	Intergenic	94598	NR_077241	643711		NR_077240	ENSG00000293309	PAFAH1B2P2	-	PAFAH1B2 pseudogene 2	pseudo
51099	chr12	50032671	50033830	+	0	NA	Intergenic	Intergenic	-7693	NM_001320004	29127		NM_013277	ENSG00000161800	RACGAP1	CDAN3B|CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
83547	chr16	28033951	28034330	+	0	NA	intron (NM_001109763, intron 1 of 6)	(CATCC)n|Simple_repeat|Simple_repeat	29574	NM_001109763	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
193302	chr6	30085971	30086200	+	0	NA	Intergenic	L1PA3|LINE|L1	-10234	NM_025236	80352		NM_025236	ENSG00000204618	RNF39	FAP216|HZF|HZFW|LIRF	ring finger protein 39	protein-coding
229460	chr9	121732621	121733280	+	0	NA	intron (NM_032552, intron 3 of 16)	intron (NM_032552, intron 3 of 16)	-9835	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
230657	chr9	128700721	128701300	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1493	NM_013355	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
100659	chr17	63706371	63708030	+	0	NA	intron (NR_156741, intron 8 of 11)	intron (NR_156741, intron 8 of 11)	6862	NR_046273	729683		NR_046273		LOC729683	-	uncharacterized LOC729683	ncRNA
30591	chr10	80148971	80149130	+	0	NA	Intergenic	L1M1|LINE|L1	16320	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
227587	chr9	92406321	92407130	+	0	NA	intron (NM_001286969, intron 4 of 6)	MLT1F2|LTR|ERVL-MaLR	-2026	NM_024416	4969		NM_014057	ENSG00000106809	OGN	OG|OIF|SLRR3A	osteoglycin	protein-coding
192664	chr6	26207251	26207950	+	0	NA	Intergenic	LTR43|LTR|ERV1	2990	NM_003545	8367		NM_003545	ENSG00000276966	H4C5	H4-16|H4/j|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C6|H4C8|H4C9|H4FJ|HIST1H4E|TEBIVANED3|TEVANED3	H4 clustered histone 5	protein-coding
132151	chr2	101741151	101741450	+	0	NA	intron (NM_001384572, intron 1 of 29)	AluY|SINE|Alu	43035	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
191611	chr6	12115351	12115650	+	0	NA	intron (NM_002114, intron 3 of 8)	intron (NM_002114, intron 3 of 8)	103188	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
82312	chr16	15660271	15660430	+	0	NA	intron (NM_017668, intron 1 of 8)	AluJo|SINE|Alu	10105	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
38945	chr11	47513221	47513880	+	0	NA	intron (NM_001376409, intron 1 of 15)	AluY|SINE|Alu	10281	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
149909	chr21	36137901	36138100	+	0	NA	intron (NM_001236, intron 2 of 2)	intron (NM_001236, intron 2 of 2)	2921	NM_001236	874		NM_001236	ENSG00000159231	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
190833	chr6	1596071	1596570	+	0	NA	Intergenic	Intergenic	-9211	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
141041	chr2	238234121	238235380	+	0	NA	TTS (NR_026923)	TTS (NR_026923)	3064	NR_026923	643387		NR_026923		TARDBPP3	-	TARDBP pseudogene 3	pseudo
27309	chr10	30476851	30476950	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	42254	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
147457	chr20	59013771	59014530	+	0	NA	Intergenic	Intergenic	-5279	NM_030773	81027		NM_030773	ENSG00000101162	TUBB1	MACTHC1	tubulin beta 1 class VI	protein-coding
164287	chr3	57591451	57591550	+	0	NA	intron (NM_001660, intron 1 of 5)	AluSg|SINE|Alu	5844	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
49102	chr12	14716451	14717040	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-20146	NM_004963	2984		NM_004963	ENSG00000070019	GUCY2C	DIAR6|GC-C|GCC|GUC2C|HSER|MECIL|MUCIL|STAR	guanylate cyclase 2C	protein-coding
176608	chr4	99054501	99054700	+	0	NA	intron (NM_015143, intron 9 of 10)	Tigger1|DNA|TcMar-Tigger	34188	NM_000671	128		NM_000671	ENSG00000197894	ADH5	ADH-3|ADHX|AMEDS|BMFS7|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding
133468	chr2	119821221	119821880	+	0	NA	intron (NM_002830, intron 2 of 26)	intron (NM_002830, intron 2 of 26)	61628	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
10621	chr1	68496001	68497480	+	0	NA	promoter-TSS (NR_110671)	promoter-TSS (NR_110671)	64	NR_110671	101927220		NR_110671	ENSG00000234264	DEPDC1-AS1	-	DEPDC1 antisense RNA 1	ncRNA
122066	chr19	48713731	48714950	+	0	NA	intron (NM_001297753, intron 4 of 6)	CpG	2617	NM_182574	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
84898	chr16	31206471	31208130	+	0	NA	Intergenic	Intergenic	-4524	NM_145182	29108		NM_013258	ENSG00000103490	PYCARD	ASC|CARD5|TMS|TMS-1|TMS1	PYD and CARD domain containing	protein-coding
23327	chr1	228097151	228098130	+	0	NA	TTS (NR_037415)	TTS (NR_037415)	377	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
200002	chr6	128519561	128520000	+	0	NA	intron (NM_001291981, intron 1 of 32).2	CpG	819	NM_001291982	5796		NM_002844	ENSG00000152894	PTPRK	R-PTP-kappa	protein tyrosine phosphatase receptor type K	protein-coding
186934	chr5	139639271	139639530	+	0	NA	Intergenic	Intergenic	-7899	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
30262	chr10	75125571	75125930	+	0	NA	intron (NM_144660, intron 1 of 4)	intron (NM_144660, intron 1 of 4)	14094	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
192763	chr6	26459421	26459880	+	0	NA	exon (NM_001197233, exon 2 of 7)	exon (NM_001197233, exon 2 of 7)	1695	NM_078476	11120		NM_007049	ENSG00000112763	BTN2A1	BK14H9.1|BT2.1|BTF1|BTN2.1|DJ3E1.1	butyrophilin subfamily 2 member A1	protein-coding
149659	chr21	33557221	33557480	+	0	NA	intron (NM_032195, intron 4 of 6)	intron (NM_032195, intron 4 of 6)	6688	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
198681	chr6	107980371	107980530	+	0	NA	Intergenic	Intergenic	-22242	NM_007214	11231		NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L	SEC63 homolog, protein translocation regulator	protein-coding
71985	chr15	25800301	25800700	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	48325	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
219993	chr8	89981071	89981230	+	0	NA	intron (NM_001024688, intron 4 of 16)	intron (NM_001024688, intron 4 of 16)	3517	NM_002485	4683		NM_002485	ENSG00000104320	NBN	AT-V1|AT-V2|ATV|NBS|NBS1|P95	nibrin	protein-coding
48150	chr12	7923271	7924780	+	0	NA	intron (NM_006931, intron 8 of 9)	AluSp|SINE|Alu	12162	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
90361	chr17	1231321	1231850	+	0	NA	Intergenic	L2c|LINE|L2	-1863	NM_001322841	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
17685	chr1	157992021	157992300	+	0	NA	Intergenic	Intergenic	-1113	NM_001286349	55243		NM_018240	ENSG00000183853	KIRREL1	KIRREL|NEPH1|NPHS23	kirre like nephrin family adhesion molecule 1	protein-coding
82588	chr16	18798321	18798580	+	0	NA	intron (NM_015161, intron 2 of 5)	L1PA7|LINE|L1	2920	NM_001313858	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
151040	chr21	44629771	44629930	+	0	NA	intron (NM_144991, intron 1 of 11)	intron (NM_144991, intron 1 of 11)	2757	NM_198690	386676		NM_198690	ENSG00000221837	KRTAP10-9	KAP10.9|KAP18.9|KRTAP18-9	keratin associated protein 10-9	protein-coding
176958	chr4	103098621	103098880	+	0	NA	intron (NM_020139, intron 1 of 9)	LTR16B2|LTR|ERVL	1084	NM_020139	56898		NM_020139	ENSG00000164039	BDH2	DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308	3-hydroxybutyrate dehydrogenase 2	protein-coding
84191	chr16	29848221	29849500	+	0	NA	TTS (NM_001293205)	TTS (NM_001293205)	14366	NM_006319	10423		NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
96063	chr17	39576071	39576900	+	0	NA	Intergenic	Intergenic	31435	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
162583	chr3	48680701	48680900	+	0	NA	intron (NM_184231, intron 5 of 12)	intron (NM_184231, intron 5 of 12)	5115	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
69912	chr14	99511551	99512180	+	0	NA	3' UTR (NM_001099402, exon 11 of 11)	3' UTR (NM_001099402, exon 11 of 11)	30456	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
11307	chr1	89286871	89287930	+	0	NA	Intergenic	Intergenic	2962	NR_077244	729930		NR_077244		LOC729930	-	intraflagellar transport associated protein pseudogene	pseudo
160016	chr3	18401221	18403180	+	0	NA	intron (NM_001322873, intron 5 of 10)	intron (NM_001322873, intron 5 of 10)	23139	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
189359	chr5	172453121	172453430	+	0	NA	intron (NM_001308175, intron 1 of 12)	intron (NM_001308175, intron 1 of 12)	1248	NM_001308175	285590		NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
213810	chr7	141032871	141033030	+	0	NA	Intergenic	L1PA2|LINE|L1	-17998	NM_053035	51650		NM_016071	ENSG00000090263	MRPS33	CGI-139|MRP-S33|PTD003|S33mt|mS33	mitochondrial ribosomal protein S33	protein-coding
157326	chr22	44625021	44625300	+	0	NA	intron (NR_044991, intron 1 of 4)	intron (NR_044991, intron 1 of 4)	259	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
146051	chr20	47361621	47362080	+	0	NA	Intergenic	AluSc8|SINE|Alu	-4961	NM_001281769	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
228160	chr9	96940701	96941630	+	0	NA	3' UTR (NM_001045477, exon 7 of 7)	3' UTR (NM_001045477, exon 7 of 7)	12322	NM_001045477	441457		NM_001024597	ENSG00000188152	NUTM2G	FAM22G|NUTMG	NUT family member 2G	protein-coding
220601	chr8	100912971	100913130	+	0	NA	Intergenic	AluSq2|SINE|Alu	37521	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
210654	chr7	100482771	100484110	+	0	NA	promoter-TSS (NM_173564)	promoter-TSS (NM_173564)	-487	NM_173564	222950		NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
56169	chr12	111412121	111412680	+	0	NA	intron (NM_005475, intron 1 of 7)	intron (NM_005475, intron 1 of 7)	6477	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
24883	chr10	967371	967530	+	0	NA	Intergenic	HAL1|LINE|L1	-20984	NM_012341	23560		NM_012341	ENSG00000107937	GTPBP4	CRFG|NGB|NOG1	GTP binding protein 4	protein-coding
103036	chr17	77106651	77107190	+	0	NA	intron (NM_001204410, intron 3 of 18)	intron (NM_001204410, intron 3 of 18)	17503	NR_106997	102466864		NR_106997	ENSG00000284250	MIR6516	hsa-mir-6516	microRNA 6516	ncRNA
128666	chr2	61457651	61458000	+	0	NA	intron (NM_014709, intron 1 of 79)	AluJr|SINE|Alu	13262	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
76332	chr15	74415401	74415600	+	0	NA	intron (NM_001146029, intron 7 of 12)	intron (NM_001146029, intron 7 of 12)	-4068	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
89600	chr16	89290371	89290750	+	0	NA	intron (NR_045839, intron 8 of 9)	intron (NR_045839, intron 8 of 9)	-5568	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
118443	chr19	35860371	35860830	+	0	NA	exon (NM_199180, exon 7 of 15)	exon (NM_199180, exon 7 of 15)	3689	NM_001329530	84063		NM_032123	ENSG00000126259	KIRREL2	FILTRIN|NEPH3|NLG1	kirre like nephrin family adhesion molecule 2	protein-coding
192081	chr6	16668601	16669560	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	91104	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
88652	chr16	85648051	85648350	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	34878	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
179973	chr5	855071	855230	+	0	NA	Intergenic	Intergenic	-4164	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
30802	chr10	84436101	84436300	+	0	NA	intron (NM_001284240, intron 5 of 9)	AluY|SINE|Alu	11031	NM_001284242	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
166194	chr3	111717101	111717980	+	0	NA	intron (NM_153268, intron 3 of 3)	intron (NM_153268, intron 3 of 3)	-14956	NM_001134437	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
156050	chr22	39980271	39981280	+	0	NA	Intergenic	Intergenic	-14179	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
210904	chr7	101184401	101184600	+	0	NA	Intergenic	AluJr|SINE|Alu	-4207	NM_198571	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
171948	chr4	889221	890230	+	0	NA	intron (NM_001318134, intron 7 of 24)	intron (NM_001318134, intron 7 of 24)	42591	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
220951	chr8	109346901	109347250	+	0	NA	Intergenic	Intergenic	12728	NM_001193557	56943		NM_020189	ENSG00000120533	ENY2	DC6|Sus1|e(y)2	ENY2 transcription and export complex 2 subunit	protein-coding
127009	chr2	36889851	36889950	+	0	NA	intron (NM_003162, intron 7 of 17)	intron (NM_003162, intron 7 of 17)	76636	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
119675	chr19	40878001	40878400	+	0	NA	intron (NM_030589, intron 4 of 7)	L2c|LINE|L2	4552	NM_000764	1549		NM_000764	ENSG00000198077	CYP2A7	CPA7|CPAD|CYP2A|CYPIIA7|P450-IIA4	cytochrome P450 family 2 subfamily A member 7	protein-coding
17184	chr1	156235001	156235400	+	0	NA	intron (NM_001199663, intron 3 of 5)	AluSx1|SINE|Alu	-6984	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
6000	chr1	26999271	26999430	+	0	NA	intron (NM_001013642, intron 1 of 1)	AluSq|SINE|Alu	5658	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
225838	chr9	38003351	38003850	+	0	NA	intron (NM_003028, intron 2 of 5)	intron (NM_003028, intron 2 of 5)	65627	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
51975	chr12	53949221	53949680	+	0	NA	Intergenic	Intergenic	-5453	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
22593	chr1	223141771	223142030	+	0	NA	intron (NM_003268, intron 1 of 5)	intron (NM_003268, intron 1 of 5)	1348	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
69842	chr14	99243171	99245100	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	28062	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
227652	chr9	92966001	92966980	+	0	NA	intron (NM_001369951, intron 1 of 17)	intron (NM_001369951, intron 1 of 17)	2483	NM_001369951	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
222735	chr8	141398201	141398400	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	6279	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
170137	chr3	183385871	183386350	+	0	NA	intron (NM_015078, intron 2 of 29)	intron (NM_015078, intron 2 of 29)	42159	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
92438	chr17	8454971	8455130	+	0	NA	intron (NM_001330129, intron 7 of 7)	intron (NM_001330129, intron 7 of 7)	19166	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
210753	chr7	100680071	100681880	+	0	NA	non-coding (NR_164719, exon 27 of 27)	non-coding (NR_164719, exon 27 of 27)	7235	NM_005273	2783		NM_005273	ENSG00000172354	GNB2	HG2C1|SSS4|SSS4; NEDHYDF	G protein subunit beta 2	protein-coding
65613	chr14	52268301	52269050	+	0	NA	intron (NM_000953, intron 1 of 1)	CpG	977	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
24721	chr1	247415601	247416730	+	0	NA	promoter-TSS (NM_001127461)	promoter-TSS (NM_001127461)	-8	NM_001243133	114548		NM_004895	ENSG00000162711	NLRP3	AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1	NLR family pyrin domain containing 3	protein-coding
85225	chr16	47592121	47592930	+	0	NA	intron (NM_001031835, intron 11 of 31)	L2c|LINE|L2	131194	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
136459	chr2	177148051	177148150	+	0	NA	Intergenic	Intergenic	64311	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
206457	chr7	32891101	32891300	+	0	NA	intron (NM_015483, intron 1 of 3)	CpG	560	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
57839	chr12	123249501	123249700	+	0	NA	intron (NM_001194995, intron 1 of 2)	LTR12C|LTR|ERV1	15856	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
4411	chr1	21195121	21195780	+	0	NA	Intergenic	Intergenic	-18553	NM_001198802	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
117778	chr19	29723721	29724830	+	0	NA	Intergenic	Intergenic	-8486	NM_001256047	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
230582	chr9	128560051	128560930	+	0	NA	intron (NM_001375312, intron 2 of 57)	AluSx|SINE|Alu	7903	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
33134	chr10	112373251	112373550	+	0	NA	promoter-TSS (NM_203379)	promoter-TSS (NM_203379)	-716	NM_203379	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
3904	chr1	17201421	17201950	+	0	NA	Intergenic	Intergenic	-3443	NM_013358	29943		NM_013358	ENSG00000142623	PADI1	HPAD10|PAD1|PDI|PDI1	peptidyl arginine deiminase 1	protein-coding
200228	chr6	131532671	131533250	+	0	NA	Intergenic	L2a|LINE|L2	-40266	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
49598	chr12	27306151	27306600	+	0	NA	intron (NM_015000, intron 3 of 13)	intron (NM_015000, intron 3 of 13)	-26461	NM_001248003	56938		NM_020183	ENSG00000029153	BMAL2	ARNTL2|CLIF|MOP9|PASD9|bHLHe6	basic helix-loop-helix ARNT like 2	protein-coding
220865	chr8	103407871	103408230	+	0	NA	intron (NM_030780, intron 1 of 6)	AluSx|SINE|Alu	7057	NM_030780	81034		NM_030780	ENSG00000164933	SLC25A32	GLYB|MFT|MFTC|RREI	solute carrier family 25 member 32	protein-coding
227902	chr9	94030151	94031110	+	0	NA	promoter-TSS (NM_001253830)	promoter-TSS (NM_001253830)	-183	NM_177995	138639		NM_152422	ENSG00000158079	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
112986	chr19	7875801	7876330	+	0	NA	Intergenic	Intergenic	-1675	NM_001190467	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
6490	chr1	28379071	28379450	+	0	NA	intron (NM_001350158, intron 1 of 14)	AluJb|SINE|Alu	9520	NM_001350158	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
184579	chr5	102855621	102856280	+	0	NA	intron (NM_001364582, intron 1 of 24)	intron (NM_001364582, intron 1 of 24)	-9873	NM_138821	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
38815	chr11	47293021	47293480	+	0	NA	intron (NR_164842, intron 20 of 33)	intron (NR_164842, intron 20 of 33)	-21140	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
198064	chr6	90226271	90226630	+	0	NA	intron (NM_001170794, intron 1 of 6)	MER63A|DNA|hAT-Blackjack	70393	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
173969	chr4	26074321	26074850	+	0	NA	Intergenic	MIRb|SINE|MIR	-88873	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
192200	chr6	17704051	17705100	+	0	NA	intron (NM_001278209, intron 1 of 22)	intron (NM_001278209, intron 1 of 22)	-1555	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
91193	chr17	3891151	3891330	+	0	NA	promoter-TSS (NM_172206)	promoter-TSS (NM_172206)	-497	NM_172206	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
122107	chr19	48782021	48783080	+	0	NA	Intergenic	Intergenic	27026	NM_019113	26291		NM_019113	ENSG00000105550	FGF21	-	fibroblast growth factor 21	protein-coding
225467	chr9	35553821	35554180	+	0	NA	intron (NM_014806, intron 2 of 11)	MIRb|SINE|MIR	9878	NM_001287239	730112		NM_001099951	ENSG00000215187	CIMIP2B	FAM166B	ciliary microtubule inner protein 2B	protein-coding
109123	chr18	80147451	80148530	+	0	NA	promoter-TSS (NR_028339)	promoter-TSS (NR_028339)	66	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
171660	chr3	197664551	197666080	+	0	NA	Intergenic	CpG	9261	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
178519	chr4	150939051	150939380	+	0	NA	intron (NM_001367550, intron 2 of 56)	MLT1C|LTR|ERVL-MaLR	76052	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
211427	chr7	105058821	105059500	+	0	NA	intron (NM_182931, intron 3 of 26)	Tigger7|DNA|TcMar-Tigger	44955	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
11936	chr1	93751871	93752100	+	0	NA	TTS (NR_148965)	TTS (NR_148965)	23398	NR_148965	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
220739	chr8	102123801	102125150	+	0	NA	promoter-TSS (NM_001040624)	promoter-TSS (NM_001040624)	-141	NM_001040629	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
180820	chr5	32444201	32445630	+	0	NA	promoter-TSS (NM_016107)	promoter-TSS (NM_016107)	-175	NR_144318	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
2480	chr1	9667801	9668300	+	0	NA	intron (NM_005026, intron 1 of 23)	AluJb|SINE|Alu	-13464	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
77636	chr15	85475201	85475950	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	94972	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
154779	chr22	36546221	36546730	+	0	NA	Intergenic	Intergenic	-17309	NR_156418	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
130048	chr2	74429071	74429230	+	0	NA	intron (NM_001015056, intron 6 of 11)	MIRb|SINE|MIR	7420	NM_032118	84058		NM_032118	ENSG00000005448	WDR54	-	WD repeat domain 54	protein-coding
60276	chr13	40617371	40617530	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSp|SINE|Alu	49191	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
29942	chr10	73417921	73418180	+	0	NA	Intergenic	AluYa5|SINE|Alu	-3992	NM_004034	310		NM_001156	ENSG00000138279	ANXA7	ANX7|SNX|SYNEXIN	annexin A7	protein-coding
8691	chr1	42037151	42037930	+	0	NA	Intergenic	Intergenic	-1606	NR_038261	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
222869	chr8	142738651	142739930	+	0	NA	Intergenic	CpG	3116	NM_020427	57152		NM_020427	ENSG00000126233	SLURP1	ANUP|ARS|ArsB|LY6-MT|LY6LS|MDM	secreted LY6/PLAUR domain containing 1	protein-coding
171589	chr3	197031451	197032150	+	0	NA	Intergenic	Intergenic	-1983	NM_005929	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
104915	chr17	81907501	81908530	+	0	NA	intron (NM_001256434, intron 4 of 13)	intron (NM_001256434, intron 4 of 13)	3160	NM_001282204	5833		NM_002861	ENSG00000185813	PCYT2	ET|SPG82	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
191367	chr6	7282201	7282650	+	0	NA	non-coding (NR_120448, exon 7 of 7)	non-coding (NR_120448, exon 7 of 7)	30774	NM_003144	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
108055	chr18	59583621	59583750	+	0	NA	intron (NM_133459, intron 2 of 10)	(GC)n|Simple_repeat|Simple_repeat	113738	NM_133459	147372		NM_133459	ENSG00000183287	CCBE1	HKLLS1	collagen and calcium binding EGF domains 1	protein-coding
148277	chr20	63694451	63695200	+	0	NA	exon (NM_001283010, exon 31 of 34)	exon (NM_001283010, exon 31 of 34)	-1827	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
86497	chr16	67033401	67033980	+	0	NA	intron (NM_001368707, intron 2 of 4)	AluY|SINE|Alu	4541	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
66381	chr14	61487871	61488030	+	0	NA	intron (NM_006255, intron 10 of 13)	AluYe5|SINE|Alu	82244	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
40429	chr11	64183751	64183850	+	0	NA	Intergenic	L2a|LINE|L2	-1472	NM_001282652	10963		NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
101132	chr17	65036321	65037130	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluSz6|SINE|Alu	19049	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
96751	chr17	41699821	41701030	+	0	NA	Intergenic	AluY|SINE|Alu	11540	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
60083	chr13	35157171	35157330	+	0	NA	exon (NM_001379245, exon 21 of 58)	exon (NM_001379245, exon 21 of 58)	214980	NM_001379245	26960		NM_015678	ENSG00000172915	NBEA	BCL8B|LYST2|NEDEGE	neurobeachin	protein-coding
2823	chr1	11043151	11043450	+	0	NA	intron (NM_006610, intron 5 of 10)	intron (NM_006610, intron 5 of 10)	3939	NM_139208	10747		NM_006610	ENSG00000009724	MASP2	MAP-2|MAP19|MASP-2|MASP1P1|sMAP	MBL associated serine protease 2	protein-coding
70287	chr14	101761401	101762750	+	0	NA	promoter-TSS (NM_001352915)	promoter-TSS (NM_001352915)	277	NM_001161725	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
140123	chr2	231527101	231527850	+	0	NA	intron (NM_006056, intron 2 of 2)	AluJb|SINE|Alu	2970	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
177035	chr4	107692271	107692630	+	0	NA	intron (NM_005443, intron 3 of 11)	L1PA11|LINE|L1	27784	NM_005443	9061		NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
168360	chr3	141892521	141893250	+	0	NA	intron (NM_001679, intron 1 of 6)	L1ME1|LINE|L1	16242	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
85672	chr16	56354171	56354530	+	0	NA	intron (NM_020988, intron 7 of 8)	MADE1|DNA|TcMar-Mariner	70639	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
14738	chr1	145989601	145991100	+	0	NA	Intergenic	Intergenic	5394	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
113834	chr19	10622621	10623600	+	0	NA	intron (NM_001145056, intron 1 of 21)	intron (NM_001145056, intron 1 of 21)	-2443	NM_001363611	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
121495	chr19	47148201	47148600	+	0	NA	intron (NR_027280, intron 2 of 8)	intron (NR_027280, intron 2 of 8)	17565	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
128698	chr2	61540421	61540830	+	0	NA	Intergenic	AluJb|SINE|Alu	-2269	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
174261	chr4	38100471	38100830	+	0	NA	intron (NM_015173, intron 14 of 19)	intron (NM_015173, intron 14 of 19)	-9531	NM_001253913	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
62522	chr13	99525921	99526330	+	0	NA	intron (NM_004800, intron 3 of 16)	L2a|LINE|L2	24653	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
45710	chr11	119083371	119083830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1277	NM_001258209	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
189053	chr5	170100321	170100600	+	0	NA	Intergenic	Intergenic	-5437	NM_144769	2299		NM_012188	ENSG00000168269	FOXI1	FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3	forkhead box I1	protein-coding
162231	chr3	47140951	47141500	+	0	NA	intron (NR_146158, intron 1 of 21)	AluJb|SINE|Alu	22888	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
61126	chr13	48528001	48528200	+	0	NA	intron (NM_001268, intron 1 of 14)	L2a|LINE|L2	4980	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
97559	chr17	44082951	44083050	+	0	NA	intron (NM_001382393, intron 18 of 26)	AluJb|SINE|Alu	12089	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
5836	chr1	26703721	26704180	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	7935	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
127303	chr2	38756701	38757230	+	0	NA	Intergenic	Intergenic	-5471	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
99946	chr17	57294801	57295600	+	0	NA	intron (NM_170721, intron 4 of 9)	intron (NM_170721, intron 4 of 9)	38181	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
226394	chr9	70402851	70403550	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	11457	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
64983	chr14	37985851	37986150	+	0	NA	Intergenic	Intergenic	-83876	NR_135286	400208		NR_135286	ENSG00000259091	LINC00517	C14orf26	long intergenic non-protein coding RNA 517	ncRNA
185362	chr5	127515751	127516300	+	0	NA	Intergenic	L2a|LINE|L2	-1615	NM_130809	133619		NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
166929	chr3	125116721	125116980	+	0	NA	intron (NM_024628, intron 8 of 13)	intron (NM_024628, intron 8 of 13)	34702	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
188125	chr5	150390601	150390880	+	0	NA	intron (NM_001195141, intron 19 of 25)	intron (NM_001195141, intron 19 of 25)	22016	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
14569	chr1	145093451	145094150	+	0	NA	promoter-TSS (NR_144320)	promoter-TSS (NR_144320)	-496	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
31264	chr10	92212971	92213300	+	0	NA	intron (NM_014912, intron 2 of 9)	intron (NM_014912, intron 2 of 9)	30144	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
198408	chr6	105985551	105986780	+	0	NA	Intergenic	CpG	-100171	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
233513	chrM	3201	4500	+	0	NA	Intergenic	Intergenic	3664	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
228313	chr9	98168301	98168500	+	0	NA	intron (NM_052820, intron 1 of 11)	intron (NM_052820, intron 1 of 11)	4492	NM_003389	7464		NM_003389	ENSG00000106789	CORO2A	CLIPINB|IR10|WDR2	coronin 2A	protein-coding
28694	chr10	60816521	60817030	+	0	NA	Intergenic	Intergenic	38297	NM_001786	983		NM_001786	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin dependent kinase 1	protein-coding
191605	chr6	12074721	12075380	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	62738	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
87240	chr16	69726121	69727180	+	0	NA	promoter-TSS (NM_001025434)	promoter-TSS (NM_001025434)	-90	NM_001025433	1728		NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	NAD(P)H quinone dehydrogenase 1	protein-coding
106573	chr18	21743301	21743700	+	0	NA	intron (NM_020774, intron 1 of 20)	L1ME4b|LINE|L1	2708	NM_020774	57534		NM_020774	ENSG00000101752	MIB1	DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6	MIB E3 ubiquitin protein ligase 1	protein-coding
195483	chr6	37133651	37134000	+	0	NA	Intergenic	AluSz6|SINE|Alu	-36327	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
192814	chr6	26811721	26811980	+	0	NA	Intergenic	CpG	144704	NR_003504	387036		NM_001033523	ENSG00000290474	GUSBP2	GUSBL1|GUSBP4|SMA3-L|SMAC3L|SMAC3L2|b55C20.1|bA239L20.1|bA239L20.5|bGLU-Lp	GUSB pseudogene 2	pseudo
24130	chr1	235818271	235818430	+	0	NA	intron (NM_001301365, intron 3 of 52)	intron (NM_001301365, intron 3 of 52)	34710	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
109770	chr19	1128121	1128580	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	3871	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
184546	chr5	102753401	102753600	+	0	NA	Intergenic	Intergenic	-1283	NM_001319943	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
194085	chr6	31892601	31893030	+	0	NA	intron (NM_001318833, intron 5 of 27).6	intron (NM_001318833, intron 5 of 27).6	4174	NM_001318833	10919		NM_006709	ENSG00000204371	EHMT2	BAT8|C6orf30|G9A|GAT8|KMT1C|NG36	euchromatic histone lysine methyltransferase 2	protein-coding
203928	chr7	1533941	1534780	+	0	NA	non-coding (NR_149036, exon 1 of 1)	non-coding (NR_149036, exon 1 of 1)	520	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
236020	chrX	55009121	55009380	+	0	NA	TTS (NM_001271748)	TTS (NM_001271748)	8887	NM_014481	27301		NM_014481	ENSG00000169188	APEX2	APE2|APEXL2|XTH2|ZGRF2	apurinic/apyrimidinic endodeoxyribonuclease 2	protein-coding
20382	chr1	198155821	198156500	+	0	NA	promoter-TSS (NM_133494)	promoter-TSS (NM_133494)	-838	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
148026	chr20	63171151	63171850	+	0	NA	Intergenic	Intergenic	-7000	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
214933	chr7	151626171	151626630	+	0	NA	intron (NM_016203, intron 5 of 15)	intron (NM_016203, intron 5 of 15)	5858	NM_024429	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
113007	chr19	7910551	7911150	+	0	NA	intron (NM_145185, intron 6 of 10)	intron (NM_145185, intron 6 of 10)	-3980	NM_001195259	100507588		NM_001195259	ENSG00000260001	TGFBR3L	GEMP|TGFR-3L	transforming growth factor beta receptor 3 like	protein-coding
191955	chr6	16136051	16136800	+	0	NA	intron (NM_013262, intron 2 of 6)	L1ME2z|LINE|L1	-5131	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
103584	chr17	78703101	78703300	+	0	NA	intron (NM_017456, intron 3 of 12)	AluSg|SINE|Alu	13832	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
123475	chr19	54167021	54167630	+	0	NA	intron (NM_144686, intron 5 of 14).4	AluSx1|SINE|Alu	5835	NM_001145303	147798		NM_144686	ENSG00000167608	TMC4	-	transmembrane channel like 4	protein-coding
73174	chr15	41489101	41489600	+	0	NA	Intergenic	AluJo|SINE|Alu	-4524	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
34303	chr10	131979671	131980230	+	0	NA	intron (NM_004052, intron 1 of 5)	CpG	2063	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
221383	chr8	123393251	123393930	+	0	NA	intron (NM_014109, intron 1 of 27)	L2a|LINE|L2	2857	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
144448	chr20	35507601	35507800	+	0	NA	intron (NM_007186, intron 30 of 34)	intron (NM_007186, intron 30 of 34)	21952	NR_026933	140873		NM_080828	ENSG00000125975	C20orf173	dJ477O4.4	chromosome 20 open reading frame 173	protein-coding
237356	chrX	118727171	118728000	+	0	NA	promoter-TSS (NM_001560)	promoter-TSS (NM_001560)	-21	NM_001560	3597		NM_001560	ENSG00000131724	IL13RA1	CD213A1|CT19|IL-13Ra|NR4	interleukin 13 receptor subunit alpha 1	protein-coding
20518	chr1	198675771	198676600	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	37145	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
53685	chr12	68458721	68459180	+	0	NA	Intergenic	L1MA2|LINE|L1	-7466	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
82043	chr16	12322551	12323430	+	0	NA	intron (NM_032167, intron 15 of 20)	intron (NM_032167, intron 15 of 20)	346256	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
52510	chr12	56045971	56046250	+	0	NA	Intergenic	AluSx1|SINE|Alu	4192	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
182326	chr5	59038621	59040430	+	0	NA	promoter-TSS (NM_001197222)	promoter-TSS (NM_001197222)	-49	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
170269	chr3	184289321	184289880	+	0	NA	intron (NM_014693, intron 12 of 18)	intron (NM_014693, intron 12 of 18)	-9641	NM_002808	5708		NM_002808	ENSG00000175166	PSMD2	P97|RPN1|S2|TRAP2	proteasome 26S subunit ubiquitin receptor, non-ATPase 2	protein-coding
176481	chr4	89836101	89836300	+	0	NA	promoter-TSS (NR_045481)	promoter-TSS (NR_045481)	40	NM_001375288	6622		NM_000345	ENSG00000145335	SNCA	NACP|PARK1|PARK4|PD1	synuclein alpha	protein-coding
158245	chr22	50300901	50301100	+	0	NA	promoter-TSS (NM_001376884)	promoter-TSS (NM_001376884)	-489	NM_001376865	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
61058	chr13	48255071	48255230	+	0	NA	intron (NM_021999, intron 2 of 5)	AluSq2|SINE|Alu	21944	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
60756	chr13	44914871	44915230	+	0	NA	Intergenic	AluSz|SINE|Alu	74421	NM_012345	26747		NM_012345	ENSG00000083635	NUFIP1	NUFIP|Rsa1|bA540M5.1	nuclear FMR1 interacting protein 1	protein-coding
79859	chr16	1491371	1491800	+	0	NA	Intergenic	Intergenic	-1775	NM_001351846	9894		NM_016111	ENSG00000100726	TELO2	CLK2|TEL2|YHFS	telomere maintenance 2	protein-coding
140770	chr2	235135971	235136130	+	0	NA	Intergenic	Intergenic	108315	NM_001371306	23677		NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding
133885	chr2	130143801	130144000	+	0	NA	intron (NM_207310, intron 1 of 7)	intron (NM_207310, intron 1 of 7)	1212	NM_207310	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
41894	chr11	67258151	67259300	+	0	NA	TTS (NM_001256405)	TTS (NM_001256405)	-7748	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
47947	chr12	6838801	6839380	+	0	NA	exon (NM_014262, exon 14 of 15)	exon (NM_014262, exon 14 of 15)	-1835	NM_001297571	2784		NM_002075	ENSG00000111664	GNB3	CSNB1H|HG2D	G protein subunit beta 3	protein-coding
168736	chr3	150820071	150821080	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-57406	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
90386	chr17	1272221	1273050	+	0	NA	TTS (NM_001164405)	TTS (NM_001164405)	2191	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
36372	chr11	3955871	3956030	+	0	NA	intron (NM_001382571, intron 1 of 9)	MER66B|LTR|ERV1	99888	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
224731	chr9	21670401	21670700	+	0	NA	Intergenic	Intergenic	-110752	NR_152878	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
12217	chr1	100403321	100404050	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	51179	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
88725	chr16	86007401	86007600	+	0	NA	Intergenic	L1ME1|LINE|L1	89153	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
81862	chr16	11640221	11640700	+	0	NA	Intergenic	Intergenic	-27995	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
96271	chr17	39862371	39862830	+	0	NA	intron (NM_183231, intron 1 of 5)	intron (NM_183231, intron 1 of 5)	1588	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
123562	chr19	54434471	54435130	+	0	NA	intron (NM_020659, intron 10 of 13).4	intron (NM_020659, intron 10 of 13).4	14238	NR_126418	104355426		NR_126418	ENSG00000226696	LENG8-AS1	-	LENG8 antisense RNA 1	ncRNA
138362	chr2	203944971	203945130	+	0	NA	intron (NM_012092, intron 1 of 4)	intron (NM_012092, intron 1 of 4)	8287	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
135125	chr2	157426601	157427030	+	0	NA	intron (NM_004288, intron 6 of 7)	intron (NM_004288, intron 6 of 7)	17274	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
36901	chr11	10786001	10786200	+	0	NA	Intergenic	L2|LINE|L2	15508	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
18619	chr1	165875351	165875650	+	0	NA	intron (NM_012474, intron 1 of 6)	MER21A|LTR|ERVL	-32421	NR_037431	100500832		NR_037431	ENSG00000283936	MIR3658	-	microRNA 3658	ncRNA
191861	chr6	15264201	15265480	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	15985	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
150771	chr21	43806171	43806730	+	0	NA	non-coding (NR_026961, exon 2 of 2)	non-coding (NR_026961, exon 2 of 2)	6117	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
223251	chr8	143669301	143670080	+	0	NA	Intergenic	LTR10B1|LTR|ERV1	-14789	NM_001100599	286075		NM_173831	ENSG00000181135	ZNF707	-	zinc finger protein 707	protein-coding
126718	chr2	30178951	30180400	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-7759	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
213204	chr7	132656901	132657250	+	0	NA	intron (NR_046323, intron 1 of 4)	intron (NR_046323, intron 1 of 4)	8281	NR_046323	286023		NM_173682	ENSG00000183470	FLJ40288	-	Putative uncharacterized protein FLJ40288	ncRNA
93310	chr17	18172271	18172630	+	0	NA	intron (NM_016239, intron 63 of 64)	MIR|SINE|MIR	-11378	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
2573	chr1	9797251	9797550	+	0	NA	intron (NM_014944, intron 1 of 17)	AluJr|SINE|Alu	26565	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
112578	chr19	6641571	6642380	+	0	NA	Intergenic	Intergenic	28183	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
59656	chr13	28494671	28494830	+	0	NA	intron (NM_002019, intron 1 of 29)	CpG	378	NM_002019	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
83799	chr16	28820421	28820680	+	0	NA	Intergenic	Intergenic	-2498	NM_148414	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
124052	chr19	55584021	55584280	+	0	NA	Intergenic	AluSp|SINE|Alu	-3302	NM_152600	163033		NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding
102911	chr17	76563671	76564230	+	0	NA	non-coding (NR_038111, exon 3 of 3)	non-coding (NR_038111, exon 3 of 3)	2317	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
128912	chr2	64260851	64260950	+	0	NA	Intergenic	Intergenic	32499	NR_120420	100507006		NR_120420		LOC100507006	-	uncharacterized LOC100507006	ncRNA
114332	chr19	12138801	12139000	+	0	NA	intron (NM_021143, intron 1 of 3)	intron (NM_021143, intron 1 of 3)	1450	NM_001203250	7568		NM_021143	ENSG00000132010	ZNF20	KOX13	zinc finger protein 20	protein-coding
89479	chr16	89113501	89113700	+	0	NA	intron (NR_147929, intron 5 of 9)	intron (NR_147929, intron 5 of 9)	19748	NM_001284316	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
227535	chr9	91710901	91711230	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-74720	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
125208	chr2	10301451	10303400	+	0	NA	promoter-TSS (NM_002149)	promoter-TSS (NM_002149)	-479	NM_002149	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
56678	chr12	120006171	120006790	+	0	NA	intron (NR_147894, intron 3 of 8)	L2a|LINE|L2	16636	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
19424	chr1	174194471	174194830	+	0	NA	intron (NM_001366447, intron 1 of 20)	LTR86B2|LTR|ERVL	35130	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
7589	chr1	35186971	35187600	+	0	NA	intron (NR_136702, intron 7 of 11)	intron (NR_136702, intron 7 of 11)	5860	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
180571	chr5	14708071	14709030	+	0	NA	3' UTR (NM_054027, exon 12 of 12)	3' UTR (NM_054027, exon 12 of 12)	-4144	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
128283	chr2	54595001	54595200	+	0	NA	intron (NM_178313, intron 1 of 30)	AluSq2|SINE|Alu	36706	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
8849	chr1	43364371	43364530	+	0	NA	TTS (NR_106792)	TTS (NR_106792)	265	NR_106792	102466723		NR_106792	ENSG00000283836	MIR6734	hsa-mir-6734	microRNA 6734	ncRNA
121982	chr19	48499171	48499930	+	0	NA	exon (NM_001080434, exon 12 of 16)	exon (NM_001080434, exon 12 of 16)	13639	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
145812	chr20	45443851	45444350	+	0	NA	intron (NR_159957, intron 2 of 3)	intron (NR_159957, intron 2 of 3)	16678	NR_159957	105372631		NR_159957		LOC105372631	-	uncharacterized LOC105372631	ncRNA
88917	chr16	87818321	87818800	+	0	NA	Intergenic	L2|LINE|L2	16100	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
3438	chr1	15882601	15882900	+	0	NA	intron (NM_015001, intron 3 of 14)	intron (NM_015001, intron 3 of 14)	-34603	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
39192	chr11	57474051	57475250	+	0	NA	intron (NM_178570, intron 2 of 2)	intron (NM_178570, intron 2 of 2)	14122	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
121213	chr19	46613801	46615350	+	0	NA	Intergenic	Intergenic	10514	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
80204	chr16	2153201	2154100	+	0	NA	3' UTR (NM_001308053, exon 10 of 10)	3' UTR (NM_001308053, exon 10 of 10)	1455	NR_002736	26788		NR_002736	ENSG00000206630	SNORD60	RNU60|U60	small nucleolar RNA, C/D box 60	snoRNA
26237	chr10	14596721	14597080	+	0	NA	intron (NM_001282695, intron 2 of 5)	MIRc|SINE|MIR	7501	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
14820	chr1	146296401	146296600	+	0	NA	Intergenic	L2a|LINE|L2	-1273	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
231262	chr9	130000951	130001950	+	0	NA	intron (NM_001363755, intron 1 of 15)	Charlie1|DNA|hAT-Charlie	41739	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
40501	chr11	64266551	64266850	+	0	NA	intron (NM_001316314, intron 29 of 31)	intron (NM_001316314, intron 29 of 31)	-3831	NM_001378076	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
131551	chr2	96766201	96766400	+	0	NA	intron (NM_020184, intron 1 of 6)	AluSz|SINE|Alu	5398	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
156444	chr22	41240721	41241350	+	0	NA	promoter-TSS (NM_138481)	promoter-TSS (NM_138481)	-104	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
106240	chr18	11976571	11976930	+	0	NA	Intergenic	Intergenic	-4757	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
168113	chr3	138699201	138699480	+	0	NA	intron (NM_001256045, intron 1 of 12)	intron (NM_001256045, intron 1 of 12)	8281	NM_001256045	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
15808	chr1	151291051	151291850	+	0	NA	TTS (NM_002651)	TTS (NM_002651)	9151	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
105621	chr18	799921	800330	+	0	NA	intron (NM_005433, intron 1 of 11)	OldhAT1|DNA|hAT-Ac	12117	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
9286	chr1	46411771	46412400	+	0	NA	intron (NM_001441, intron 12 of 14)	intron (NM_001441, intron 12 of 14)	17768	NM_001441	2166		NM_001441	ENSG00000117480	FAAH	FAAH-1|FAAH1|PSAB	fatty acid amide hydrolase	protein-coding
228019	chr9	95762351	95762650	+	0	NA	Intergenic	Intergenic	-113191	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
199097	chr6	111670301	111670680	+	0	NA	intron (NM_001370529, intron 11 of 11)	L2a|LINE|L2	-64216	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
224959	chr9	33049551	33050080	+	0	NA	intron (NM_018225, intron 10 of 11)	AluJr|SINE|Alu	24542	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
462	chr1	1142071	1142630	+	0	NA	intron (NR_038869, intron 2 of 2)	AluSx1|SINE|Alu	5333	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
167061	chr3	126980851	126981150	+	0	NA	Intergenic	AluSz|SINE|Alu	-7594	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
56367	chr12	113151651	113152080	+	0	NA	intron (NM_001144872, intron 1 of 7)	intron (NM_001144872, intron 1 of 7)	2007	NM_001144872	387885		NM_001144872	ENSG00000186710	CFAP73	CCDC42B|MIA2	cilia and flagella associated protein 73	protein-coding
48210	chr12	8088571	8089150	+	0	NA	intron (NR_024260, intron 1 of 6)	L2a|LINE|L2	6586	NM_015509	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
154746	chr22	36483001	36483330	+	0	NA	Intergenic	AluSc|SINE|Alu	-1525	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
37676	chr11	27472511	27473780	+	0	NA	promoter-TSS (NM_001346432)	promoter-TSS (NM_001346432)	-355	NM_018490	55366		NM_018490	ENSG00000205213	LGR4	BNMD17|DPSL|GPR48	leucine rich repeat containing G protein-coupled receptor 4	protein-coding
163755	chr3	52363001	52363200	+	0	NA	exon (NM_015512, exon 32 of 78)	exon (NM_015512, exon 32 of 78)	46781	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
221089	chr8	117458621	117458880	+	0	NA	Intergenic	L1MA9|LINE|L1	-61963	NM_001282986	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
101964	chr17	74729551	74729650	+	0	NA	intron (NM_175738, intron 2 of 8)	LTR33|LTR|ERVL	-6960	NM_001330471	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
164235	chr3	56992121	56992580	+	0	NA	intron (NM_001377411, intron 1 of 11)	L2a|LINE|L2	52310	NR_046572	100874200		NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
161183	chr3	39131251	39131650	+	0	NA	intron (NR_159494, intron 19 of 28)	MIRb|SINE|MIR	-6756	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
15101	chr1	148572921	148573600	+	0	NA	exon (NM_015383, exon 19 of 66)	exon (NM_015383, exon 19 of 66)	22457	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
32680	chr10	103916721	103916980	+	0	NA	intron (NM_024928, intron 2 of 9)	L2a|LINE|L2	1334	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
11109	chr1	86383001	86383280	+	0	NA	exon (NM_001007022, exon 5 of 18)	exon (NM_001007022, exon 5 of 18)	12921	NM_001366784	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
33515	chr10	119189571	119190380	+	0	NA	Intergenic	Intergenic	-11163	NM_006793	10935		NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PPPCD|PRO1748|SCAR32|SP-22|prx-III	peroxiredoxin 3	protein-coding
224609	chr9	20403421	20403700	+	0	NA	intron (NM_001286691, intron 5 of 10)	intron (NM_001286691, intron 5 of 10)	7678	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
172265	chr4	1408321	1408580	+	0	NA	Intergenic	CpG	-2008	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
238963	chrX	155188871	155189580	+	0	NA	Intergenic	MIR|SINE|MIR	-7782	NM_001303544	7411		NM_003372	ENSG00000155959	VBP1	HIBBJ46|PFD3|PFDN3|VBP-1	VHL binding protein 1	protein-coding
5887	chr1	26790271	26791280	+	0	NA	non-coding (NR_164652, exon 2 of 4)	non-coding (NR_164652, exon 2 of 4)	2587	NM_001374482	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
211535	chr7	105383071	105383430	+	0	NA	intron (NM_001350742, intron 2 of 16)	AluY|SINE|Alu	5671	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
230264	chr9	127912671	127913150	+	0	NA	intron (NM_175040, intron 2 of 4)	intron (NM_175040, intron 2 of 4)	4116	NM_175040	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
47538	chr12	4278251	4279730	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-2806	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
233132	chr9	137149871	137150030	+	0	NA	intron (NM_007327, intron 4 of 19)	intron (NM_007327, intron 4 of 19)	10796	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
155730	chr22	39140451	39141280	+	0	NA	intron (NM_001346743, intron 3 of 5)	intron (NM_001346743, intron 3 of 5)	11815	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
86264	chr16	58496221	58496480	+	0	NA	intron (NM_022910, intron 3 of 15)	intron (NM_022910, intron 3 of 15)	-3793	NR_040072	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
192257	chr6	20287571	20287730	+	0	NA	Intergenic	AluSp|SINE|Alu	-75181	NM_001080480	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
122150	chr19	48870621	48871300	+	0	NA	Intergenic	AluY|SINE|Alu	-1432	NM_014330	23645		NM_014330	ENSG00000087074	PPP1R15A	GADD34	protein phosphatase 1 regulatory subunit 15A	protein-coding
173587	chr4	10364271	10364430	+	0	NA	Intergenic	Intergenic	93076	NM_053042	85460		NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
193369	chr6	30330601	30331080	+	0	NA	exon (NM_021253, exon 4 of 9).2	exon (NM_021253, exon 4 of 9).2	1529	NM_001199119	202658		NM_001199119	ENSG00000248167	TRIM39-RPP21	TRIM39R	TRIM39-RPP21 readthrough	protein-coding
222656	chr8	141174171	141174330	+	0	NA	intron (NR_148197, intron 14 of 23)	intron (NR_148197, intron 14 of 23)	45661	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
117213	chr19	19404351	19404450	+	0	NA	intron (NM_001384535, intron 1 of 10)	AluSc8|SINE|Alu	-1275	NM_001384527	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
157293	chr22	44330271	44330430	+	0	NA	Intergenic	MIRc|SINE|MIR	-17399	NM_001099294	85352		NM_001099294	ENSG00000138944	SHISAL1	KIAA1644	shisa like 1	protein-coding
212187	chr7	117012501	117012900	+	0	NA	intron (NR_161422, intron 1 of 14)	MIRb|SINE|MIR	-2212	NM_001369602	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
18311	chr1	161169501	161170100	+	0	NA	intron (NM_001365400, intron 7 of 11)	intron (NM_001365400, intron 7 of 11)	3154	NM_001365398	5498		NM_000309	ENSG00000143224	PPOX	PPO|V290M|VP|VPCO	protoporphyrinogen oxidase	protein-coding
59899	chr13	30743471	30744950	+	0	NA	intron (NM_001629, intron 2 of 4)	intron (NM_001629, intron 2 of 4)	8667	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
213429	chr7	138449671	138449980	+	0	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-10434	NM_015905	8805		NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
117982	chr19	33417271	33417430	+	0	NA	intron (NM_001166056, intron 7 of 12)	intron (NM_001166056, intron 7 of 12)	42826	NM_001252296	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
145731	chr20	45060471	45060830	+	0	NA	intron (NM_001352385, intron 11 of 11)	MIRb|SINE|MIR	40477	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
100962	chr17	64509071	64509580	+	0	NA	intron (NR_133644, intron 2 of 19)	AluJo|SINE|Alu	2348	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
107805	chr18	51187921	51188680	+	0	NA	intron (NM_016626, intron 1 of 1)	intron (NM_016626, intron 1 of 1)	9381	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
47769	chr12	6549821	6550450	+	0	NA	intron (NM_001039670, intron 3 of 9)	intron (NM_001039670, intron 3 of 9)	5907	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
123798	chr19	55157121	55157530	+	0	NA	intron (NM_000363, intron 2 of 7)	intron (NM_000363, intron 2 of 7)	407	NM_000363	7137		NM_000363	ENSG00000129991	TNNI3	CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI	troponin I3, cardiac type	protein-coding
146287	chr20	49125821	49126080	+	0	NA	intron (NM_001322927, intron 4 of 11)	L1MC4a|LINE|L1	62384	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
14075	chr1	120846521	120847500	+	0	NA	Intergenic	Intergenic	3975	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
222906	chr8	142832351	142832650	+	0	NA	Intergenic	L1MEd|LINE|L1	-2301	NM_002066	2765		NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
206400	chr7	31017201	31017600	+	0	NA	Intergenic	Intergenic	-34908	NM_001118	117		NM_001118	ENSG00000078549	ADCYAP1R1	PAC1|PAC1R|PACAPR|PACAPRI	ADCYAP receptor type I	protein-coding
46292	chr11	124871351	124871650	+	0	NA	intron (NM_022370, intron 7 of 27)	intron (NM_022370, intron 7 of 27)	-4682	NR_163409	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
194553	chr6	33343471	33344600	+	0	NA	Intergenic	L1ME4b|LINE|L1	-14756	NM_001369203	113523636		NM_001369203	ENSG00000286920	SMIM40	-	small integral membrane protein 40	protein-coding
50307	chr12	46458651	46459400	+	0	NA	intron (NR_125378, intron 3 of 3)	intron (NR_125378, intron 3 of 3)	74918	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
67000	chr14	67359301	67360860	+	0	NA	promoter-TSS (NM_015994)	promoter-TSS (NM_015994)	-248	NM_004094	1965		NM_004094	ENSG00000134001	EIF2S1	EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A	eukaryotic translation initiation factor 2 subunit alpha	protein-coding
107661	chr18	49022601	49022800	+	0	NA	Intergenic	Intergenic	-1003	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
236593	chrX	73581021	73581280	+	0	NA	intron (NM_001039840, intron 2 of 5)	intron (NM_001039840, intron 2 of 5)	18002	NM_001039840	53344		NM_001039840	ENSG00000204116	CHIC1	BRX	cysteine rich hydrophobic domain 1	protein-coding
110681	chr19	2272501	2274180	+	0	NA	3' UTR (NM_001301020, exon 5 of 5)	3' UTR (NM_001301020, exon 5 of 5)	3854	NM_004152	4946		NM_004152	ENSG00000104904	OAZ1	AZ1|AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
31497	chr10	96658021	96658280	+	0	NA	intron (NM_152309, intron 2 of 16)	L2c|LINE|L2	62364	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
3191	chr1	13730271	13731370	+	0	NA	intron (NM_001135610, intron 2 of 7)	intron (NM_001135610, intron 2 of 7)	-18595	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
199373	chr6	116258021	116258280	+	0	NA	intron (NM_001322937, intron 1 of 6)	AluSx1|SINE|Alu	3979	NM_001322938	29940		NM_013352	ENSG00000111817	DSE	DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
391	chr1	1050701	1050900	+	0	NA	exon (NM_001364727, exon 29 of 36)	exon (NM_001364727, exon 29 of 36)	-8934	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
24844	chr10	429201	429400	+	0	NA	intron (NM_014974, intron 4 of 36)	intron (NM_014974, intron 4 of 36)	-199264	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
9553	chr1	51575701	51576250	+	0	NA	intron (NR_161259, intron 2 of 8)	MER34|LTR|ERV1	7756	NR_161259	441884		NR_161259		CALR4P	-	calreticulin 4, pseudogene	pseudo
220528	chr8	100686121	100686380	+	0	NA	Intergenic	L1MC4|LINE|L1	16774	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
152322	chr22	20390651	20390950	+	0	NA	Intergenic	Intergenic	-3315	NM_001256524	7625		NM_003426	ENSG00000185252	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
182688	chr5	67818251	67818450	+	0	NA	Intergenic	L1PA3|LINE|L1	25137	NR_130779	101928858		NR_130779	ENSG00000249364	LINC02997	-	long intergenic non-protein coding RNA 2997	ncRNA
191348	chr6	7138901	7139380	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	31179	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
156007	chr22	39936551	39937180	+	0	NA	intron (NM_001291828, intron 1 of 4)	MER124|DNA?|DNA?	-9952	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
104103	chr17	80274301	80275950	+	0	NA	intron (NM_020954, intron 3 of 16)	intron (NM_020954, intron 3 of 16)	14273	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
137504	chr2	197162751	197163480	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-34876	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
217089	chr8	24245151	24245250	+	0	NA	Intergenic	Intergenic	-48840	NR_130709	10863		NM_014265	ENSG00000042980	ADAM28	ADAM 28|MDC-L|MDCL|eMDC II|eMDCII	ADAM metallopeptidase domain 28	protein-coding
154542	chr22	36161521	36162700	+	0	NA	intron (NM_145641, intron 1 of 4)	LTR3|LTR|ERVK	-1181	NM_145640	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
12709	chr1	109499171	109499400	+	0	NA	3' UTR (NM_001134400, exon 3 of 3)	3' UTR (NM_001134400, exon 3 of 3)	5191	NM_182580	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
120984	chr19	45730051	45732180	+	0	NA	promoter-TSS (NM_001080469)	promoter-TSS (NM_001080469)	-219	NM_001080469	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
130067	chr2	74471821	74473850	+	0	NA	promoter-TSS (NM_053050)	promoter-TSS (NM_053050)	-155	NM_053050	116540		NM_053050	ENSG00000204822	MRPL53	L53MT|mL53	mitochondrial ribosomal protein L53	protein-coding
200069	chr6	130055551	130055660	+	0	NA	intron (NM_001007102, intron 7 of 21)	(CTCC)n|Simple_repeat|Simple_repeat	35961	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
118833	chr19	38597101	38597300	+	0	NA	intron (NM_007181, intron 24 of 31)	intron (NM_007181, intron 24 of 31)	853	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
61235	chr13	49777901	49778380	+	0	NA	intron (NM_002267, intron 1 of 16)	L1MC5|LINE|L1	14542	NM_002267	3839		NM_002267	ENSG00000102753	KPNA3	IPOA4|SPG88|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
46561	chr11	128490151	128491000	+	0	NA	exon (NM_001330451, exon 2 of 7)	exon (NM_001330451, exon 2 of 7)	31735	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
149962	chr21	36387271	36387430	+	0	NA	intron (NM_005441, intron 2 of 13)	AluJr|SINE|Alu	1958	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
17143	chr1	156189301	156189500	+	0	NA	Intergenic	LTR22E|LTR|ERVK	-4704	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
72007	chr15	25933621	25934190	+	0	NA	intron (NR_040082, intron 1 of 4)	intron (NR_040082, intron 1 of 4)	31545	NR_040082	100128714		NR_040082	ENSG00000206187	LINC02346	-	long intergenic non-protein coding RNA 2346	ncRNA
182415	chr5	61351851	61352380	+	0	NA	intron (NM_020928, intron 1 of 13)	L2a|LINE|L2	19857	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
62203	chr13	98445321	98446500	+	0	NA	3' UTR (NM_001032296, exon 11 of 11)	3' UTR (NM_001032296, exon 11 of 11)	76215	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
10975	chr1	84301351	84301950	+	0	NA	promoter-TSS (NM_001134663)	promoter-TSS (NM_001134663)	-58	NM_001134663	148418		NM_001010971	ENSG00000203943	SAMD13	DJL|HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding
239461	chrY	56722351	56722450	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-231855	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
165021	chr3	71396171	71396530	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-91579	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
29440	chr10	70383471	70383700	+	0	NA	promoter-TSS (NM_018205)	promoter-TSS (NM_018205)	-935	NM_001278214	55222		NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
225448	chr9	35107271	35107880	+	0	NA	exon (NM_025182, exon 3 of 9)	exon (NM_025182, exon 3 of 9)	3877	NM_001317991	80256		NM_025182	ENSG00000005238	ATOSB	FAM214B|KIAA1539	atos homolog B	protein-coding
134863	chr2	148713571	148714000	+	0	NA	intron (NM_015630, intron 2 of 13)	Tigger3b|DNA|TcMar-Tigger	69034	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
54036	chr12	75702421	75703180	+	0	NA	Intergenic	L1MC5a|LINE|L1	-191191	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
145959	chr20	46205571	46205930	+	0	NA	intron (NM_021248, intron 7 of 11)	intron (NM_021248, intron 7 of 11)	87436	NR_126502	958		NM_001250	ENSG00000101017	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule	protein-coding
215693	chr8	946871	947100	+	0	NA	intron (NM_001346810, intron 2 of 14)	intron (NM_001346810, intron 2 of 14)	-63759	NR_160729	105377777		NR_160729		LOC105377777	-	uncharacterized LOC105377777	ncRNA
25185	chr10	5564171	5565150	+	0	NA	Intergenic	Intergenic	31458	NR_134491	105376382		NR_134491	ENSG00000242147	LASTR	LINC02657	lncRNA associated with SART3 regulation of splicing	ncRNA
38540	chr11	45906821	45907330	+	0	NA	TTS (NM_005456)	TTS (NM_005456)	196	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
196727	chr6	45185321	45185980	+	0	NA	intron (NM_001350329, intron 2 of 10)	MER65B|LTR|ERV1	12120	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
184742	chr5	109708751	109709050	+	0	NA	intron (NM_002372, intron 1 of 21)	MLT2B5|LTR|ERVL	19534	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
199079	chr6	111657851	111657950	+	0	NA	Intergenic	Intergenic	-51626	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
34061	chr10	124800521	124800780	+	0	NA	Intergenic	LTR7|LTR|ERV1	-1169	NM_032182	23172		NM_032182	ENSG00000165660	ABRAXAS2	ABRO1|FAM175B|KIAA0157	abraxas 2, BRISC complex subunit	protein-coding
43245	chr11	75522501	75523700	+	0	NA	intron (NM_030792, intron 1 of 16)	intron (NM_030792, intron 1 of 16)	2473	NM_001351168	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
113444	chr19	9827021	9828880	+	0	NA	promoter-TSS (NM_001048241)	promoter-TSS (NM_001048241)	32	NM_024292	59286		NM_024292	ENSG00000198258	UBL5	HUB1	ubiquitin like 5	protein-coding
78263	chr15	90837901	90838830	+	0	NA	Intergenic	Intergenic	-30223	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
39004	chr11	47721101	47721650	+	0	NA	intron (NM_015308, intron 15 of 16)	AluSz6|SINE|Alu	-6006	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
68067	chr14	75263221	75263480	+	0	NA	Intergenic	Charlie18a|DNA|hAT-Charlie	-15478	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
202065	chr6	154230921	154231400	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	98921	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
231036	chr9	129612271	129612530	+	0	NA	exon (NM_199350, exon 7 of 7)	exon (NM_199350, exon 7 of 7)	3516	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
128859	chr2	63977821	63978500	+	0	NA	intron (NM_016516, intron 3 of 22)	L1MCb|LINE|L1	41268	NM_016516	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
42459	chr11	69636671	69636830	+	0	NA	Intergenic	CpG	-4406	NM_053056	595		NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
71580	chr14	106479901	106480700	+	0	NA	Intergenic	CpG	-2139	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
145609	chr20	44644511	44645330	+	0	NA	intron (NR_136160, intron 1 of 10)	intron (NR_136160, intron 1 of 10)	6779	NM_000022	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
64944	chr14	35814201	35814800	+	0	NA	Intergenic	L1PA16|LINE|L1	-5205	NM_014990	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
180419	chr5	10393171	10393330	+	0	NA	intron (NM_001270660, intron 6 of 24)	AluJb|SINE|Alu	-9114	NR_162106	113218502		NR_162106		MIR10397	-	microRNA 10397	ncRNA
21012	chr1	202885051	202885650	+	0	NA	intron (NM_002871, intron 1 of 1)	intron (NM_002871, intron 1 of 1)	3799	NM_002871	5877		NM_002871	ENSG00000183155	RABIF	MSS4|RASGFR3|RASGRF3	RAB interacting factor	protein-coding
200363	chr6	134168271	134169050	+	0	NA	TTS (NM_001291995)	TTS (NM_001291995)	6206	NM_005627	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
217383	chr8	28099071	28099630	+	0	NA	intron (NM_001284224, intron 2 of 12)	MER20|DNA|hAT-Charlie	6211	NM_001284224	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
77172	chr15	80071951	80072880	+	0	NA	promoter-TSS (NM_001242916)	promoter-TSS (NM_001242916)	-146	NM_001242916	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
193063	chr6	28695701	28696100	+	0	NA	Intergenic	Intergenic	-41425	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
63165	chr13	113665951	113666050	+	0	NA	Intergenic	Intergenic	-1219	NM_002929	6011		NM_002929	ENSG00000185974	GRK1	GPRK1|RHOK|RK	G protein-coupled receptor kinase 1	protein-coding
50936	chr12	49356821	49357380	+	0	NA	Intergenic	FRAM|SINE|Alu	10212	NM_001304944	79962		NM_024902	ENSG00000178401	DNAJC22	wus	DnaJ heat shock protein family (Hsp40) member C22	protein-coding
69211	chr14	92689301	92689900	+	0	NA	TTS (NM_001319987)	TTS (NM_001319987)	59027	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
171967	chr4	906401	906750	+	0	NA	intron (NM_001318134, intron 1 of 24)	intron (NM_001318134, intron 1 of 24)	25741	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
215794	chr8	2195421	2195980	+	0	NA	Intergenic	Intergenic	119111	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
168532	chr3	144127921	144128580	+	0	NA	Intergenic	Intergenic	155169	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
30961	chr10	87828251	87828550	+	0	NA	intron (NR_028492, intron 2 of 3)	Tigger1|DNA|TcMar-Tigger	10087	NR_028492	142913		NM_152427	ENSG00000290782	CFL1P1	CFLP1	cofilin 1 pseudogene 1	pseudo
60552	chr13	41477501	41477900	+	0	NA	Intergenic	L1PA7|LINE|L1	20150	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
185530	chr5	131341451	131342730	+	0	NA	intron (NM_001375633, intron 2 of 5)	AluSc5|SINE|Alu	78037	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
85136	chr16	37564251	37564350	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1817748	NR_033985	400533		NR_033985	ENSG00000261122	LINC02167	-	long intergenic non-protein coding RNA 2167	ncRNA
94409	chr17	29004051	29004750	+	0	NA	intron (NM_001290202, intron 1 of 16)	intron (NM_001290202, intron 1 of 16)	1633	NM_178860	124925		NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
175145	chr4	55409651	55409750	+	0	NA	intron (NR_073070, intron 2 of 6)	MER20|DNA|hAT-Charlie	13743	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
63190	chr13	113760651	113761680	+	0	NA	intron (NM_001348663, intron 1 of 7)	intron (NM_001348663, intron 1 of 7)	1939	NM_182614	348013		NM_182614	ENSG00000184497	TMEM255B	FAM70B	transmembrane protein 255B	protein-coding
27279	chr10	30241151	30241350	+	0	NA	Intergenic	Intergenic	29398	NR_120653	101929279		NR_120653		LOC101929279	-	uncharacterized LOC101929279	ncRNA
173806	chr4	17807401	17807880	+	0	NA	intron (NM_017741, intron 1 of 2)	L1M5|LINE|L1	3117	NM_001345885	54876		NM_017741	ENSG00000163257	DCAF16	C4orf30	DDB1 and CUL4 associated factor 16	protein-coding
137165	chr2	191108851	191109350	+	0	NA	intron (NM_003151, intron 3 of 23)	MIRc|SINE|MIR	41894	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
5585	chr1	26004451	26004630	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-6477	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
6228	chr1	27519271	27520050	+	0	NA	Intergenic	Intergenic	-29493	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
98345	chr17	46288151	46289050	+	0	NA	intron (NM_001352769, intron 4 of 4)	AluJb|SINE|Alu	-6531	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
123766	chr19	55091401	55091600	+	0	NA	exon (NM_001271618, exon 22 of 22)	exon (NM_001271618, exon 22 of 22)	11108	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
224812	chr9	26613951	26614230	+	0	NA	Intergenic	LTR13|LTR|ERVK	278712	NM_024828	79886		NM_024828	ENSG00000120159	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
60044	chr13	32746401	32747000	+	0	NA	intron (NM_015032, intron 24 of 34)	Tigger17a|DNA|TcMar-Tigger	160248	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
91016	chr17	2798571	2799100	+	0	NA	intron (NM_001100398, intron 1 of 23)	intron (NM_001100398, intron 1 of 23)	2397	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
79696	chr16	1291721	1291980	+	0	NA	Intergenic	Intergenic	-17302	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
90718	chr17	1882671	1883080	+	0	NA	intron (NM_001355120, intron 12 of 16)	intron (NM_001355120, intron 12 of 16)	52870	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
126273	chr2	27189071	27189230	+	0	NA	Intergenic	AluJb|SINE|Alu	23118	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
170028	chr3	181695271	181695930	+	0	NA	intron (NR_075093, intron 4 of 4)	CpG	-16325	NM_003106	6657		NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box transcription factor 2	protein-coding
33840	chr10	124222501	124223100	+	0	NA	Intergenic	Intergenic	-129202	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
168655	chr3	150412371	150413380	+	0	NA	intron (NM_001303264, intron 1 of 2)	intron (NM_001303264, intron 1 of 2)	4577	NR_130136	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
161458	chr3	42210021	42210280	+	0	NA	exon (NM_001265608, exon 14 of 14)	exon (NM_001265608, exon 14 of 14)	49957	NM_014965	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
159785	chr3	16317351	16317780	+	0	NA	intron (NM_015150, intron 9 of 9)	intron (NM_015150, intron 9 of 9)	52353	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
206622	chr7	35857601	35858080	+	0	NA	intron (NM_001788, intron 2 of 12)	intron (NM_001788, intron 2 of 12)	56621	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
56877	chr12	120295751	120295850	+	0	NA	intron (NM_001385735, intron 1 of 3)	AluSx|SINE|Alu	-2563	NR_003925	26835		NR_003925	ENSG00000200795	RNU4-1	RNU4A|RNU4B2|U4|U4BL	RNA, U4 small nuclear 1	snRNA
239338	chrY	19193151	19193250	+	0	NA	Intergenic	Intergenic	-115653	NR_001543	83869		NM_031932	ENSG00000176728	TTTY14	CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14	testis expressed transcript, Y-linked 14	ncRNA
61313	chr13	50354871	50356000	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	172014	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
182293	chr5	57499321	57499580	+	0	NA	Intergenic	Intergenic	-16639	NM_001017992	345651		NM_001017992	ENSG00000169067	ACTBL2	ACT	actin beta like 2	protein-coding
227427	chr9	89919301	89919590	+	0	NA	Intergenic	Intergenic	-49971	NR_109791	101927847		NR_109791		LOC101927847	-	uncharacterized LOC101927847	ncRNA
229629	chr9	124040251	124040350	+	0	NA	Intergenic	Intergenic	28532	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
186109	chr5	134131901	134133850	+	0	NA	intron (NM_001366502, intron 1 of 7)	intron (NM_001366502, intron 1 of 7)	9257	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
168905	chr3	152330221	152330750	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	10505	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
123284	chr19	53545451	53546130	+	0	NA	intron (NM_001317113, intron 2 of 4)	intron (NM_001317113, intron 2 of 4)	7002	NM_001253800	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
27759	chr10	35219371	35219530	+	0	NA	Intergenic	Intergenic	23548	NM_182724	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
9237	chr1	45881721	45881980	+	0	NA	intron (NM_001324321, intron 1 of 28)	intron (NM_001324321, intron 1 of 28)	17502	NM_001324321	23139		NM_015112	ENSG00000086015	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
149134	chr21	17777221	17777630	+	0	NA	TTS (NR_038870)	TTS (NR_038870)	15084	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
184597	chr5	103119521	103121100	+	0	NA	promoter-TSS (NM_015216)	promoter-TSS (NM_015216)	9	NM_001276277	23262		NM_015216	ENSG00000145725	PPIP5K2	CFAP160|DFNB100|HISPPD1|IP7K2|VIP2	diphosphoinositol pentakisphosphate kinase 2	protein-coding
117495	chr19	19820701	19822500	+	0	NA	intron (NM_001099269, intron 1 of 3)	intron (NM_001099269, intron 1 of 3)	150	NM_001099269	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
157415	chr22	45079501	45079700	+	0	NA	Intergenic	Intergenic	-69595	NM_138415	112885		NM_138415	ENSG00000056487	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
15607	chr1	150609201	150609400	+	0	NA	Intergenic	AluSc5|SINE|Alu	19833	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
233964	chrX	2644601	2644800	+	0	NA	intron (NR_033380, intron 8 of 8)	intron (NR_033380, intron 8 of 8)	-29353	NR_037842	100359394		NR_037842	ENSG00000230542	LINC00102	NCRNA00102	long intergenic non-protein coding RNA 102	ncRNA
216890	chr8	22672001	22672300	+	0	NA	Intergenic	Intergenic	-3002	NR_156436	55909		NM_018688	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
223087	chr8	143419621	143420130	+	0	NA	TTS (NR_126358)	TTS (NR_126358)	2196	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
171355	chr3	196062321	196062780	+	0	NA	intron (NM_001313966, intron 11 of 16)	intron (NM_001313966, intron 11 of 16)	19540	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
62726	chr13	105338671	105339030	+	0	NA	Intergenic	Intergenic	-127017	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
73921	chr15	50880421	50881430	+	0	NA	Intergenic	Intergenic	-27758	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
93049	chr17	17391501	17392800	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-84850	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
162423	chr3	48411801	48412200	+	0	NA	exon (NM_001130082, exon 28 of 38)	exon (NM_001130082, exon 28 of 38)	17463	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
59525	chr13	27168951	27169250	+	0	NA	TTS (NR_046547)	TTS (NR_046547)	2711	NM_182488	219333		NM_182488	ENSG00000152484	USP12	UBH1|USP12L1	ubiquitin specific peptidase 12	protein-coding
184411	chr5	98917371	98917530	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-11112	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
115318	chr19	14979401	14979800	+	0	NA	5' UTR (NM_001384669, exon 1 of 10)	5' UTR (NM_001384669, exon 1 of 10)	264	NM_001272088	6511		NM_005071	ENSG00000105143	SLC1A6	EAAT4	solute carrier family 1 member 6	protein-coding
155398	chr22	38327651	38328130	+	0	NA	intron (NM_001289912, intron 5 of 14)	intron (NM_001289912, intron 5 of 14)	-9806	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
26551	chr10	21599701	21600100	+	0	NA	intron (NR_136736, intron 6 of 25)	intron (NR_136736, intron 6 of 25)	65668	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
187322	chr5	141636121	141637700	+	0	NA	promoter-TSS (NM_001355040)	promoter-TSS (NM_001355040)	-40	NM_001130029	285613		NM_173828	ENSG00000164620	RELL2	C5orf16	RELT like 2	protein-coding
94670	chr17	30365321	30365580	+	0	NA	Intergenic	Intergenic	-13477	NM_001304	1362		NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
123330	chr19	53588321	53589680	+	0	NA	Intergenic	AluSp|SINE|Alu	14497	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
144838	chr20	36864871	36865200	+	0	NA	Intergenic	Intergenic	-1497	NM_080627	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
138530	chr2	207504871	207505230	+	0	NA	Intergenic	Intergenic	-24912	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
14493	chr1	144550001	144550200	+	0	NA	Intergenic	AluJb|SINE|Alu	1843	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
163114	chr3	50122621	50122880	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-21762	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
157688	chr22	46335121	46336630	+	0	NA	intron (NR_104240, intron 1 of 10)	CpG	161	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
8024	chr1	38042001	38042400	+	0	NA	Intergenic	Intergenic	4593	NM_002699	5453		NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
113050	chr19	8052101	8053230	+	0	NA	promoter-TSS (NM_005624)	promoter-TSS (NM_005624)	-97	NM_001201359	6370		NM_005624	ENSG00000131142	CCL25	Ck beta-15|Ckb15|SCYA25|TECK|TECKvar	C-C motif chemokine ligand 25	protein-coding
82084	chr16	14289701	14290350	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-12263	NR_132983	100129781		NR_132983	ENSG00000262454	MIR193BHG	HypERlnc|lincNORS	MIR193b-365a host gene	ncRNA
232352	chr9	135506221	135506680	+	0	NA	promoter-TSS (NR_121579)	promoter-TSS (NR_121579)	-3	NR_121579	101928525		NR_121579	ENSG00000226706	LOC101928525	-	uncharacterized LOC101928525	ncRNA
203551	chr7	887801	888450	+	0	NA	intron (NM_015949, intron 4 of 8)	intron (NM_015949, intron 4 of 8)	11571	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
100134	chr17	58417071	58417900	+	0	NA	promoter-TSS (NM_001305544)	promoter-TSS (NM_001305544)	49	NM_017763	54894		NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
111303	chr19	3602951	3604050	+	0	NA	intron (NM_201636, intron 1 of 3)	intron (NM_201636, intron 1 of 3)	3375	NM_201636	6915		NM_001060	ENSG00000006638	TBXA2R	BDPLT13|TXA2-R	thromboxane A2 receptor	protein-coding
103262	chr17	77665201	77665600	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	63159	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
94521	chr17	29557071	29557300	+	0	NA	Intergenic	AluJb|SINE|Alu	9852	NM_198147	116236		NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding
132704	chr2	109019051	109019230	+	0	NA	Intergenic	MIRb|SINE|MIR	-29920	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
129644	chr2	70148321	70148580	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-23134	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
114560	chr19	12893371	12894050	+	0	NA	intron (NM_000159, intron 6 of 11)	intron (NM_000159, intron 6 of 11)	2550	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
36862	chr11	10444921	10445180	+	0	NA	Intergenic	Intergenic	-5271	NM_001172431	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
204061	chr7	1988601	1988800	+	0	NA	intron (NM_001304524, intron 12 of 16)	intron (NM_001304524, intron 12 of 16)	-48129	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
5357	chr1	25335471	25336050	+	0	NA	intron (NR_135790, intron 1 of 2)	intron (NR_135790, intron 1 of 2)	2494	NM_001321772	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
81372	chr16	4956101	4956950	+	0	NA	Intergenic	L2c|LINE|L2	-1805	NM_014692	9717		NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14 like lipid binding 5	protein-coding
155366	chr22	38291071	38291230	+	0	NA	3' UTR (NM_001289912, exon 15 of 15)	3' UTR (NM_001289912, exon 15 of 15)	-18140	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
156834	chr22	41948121	41948380	+	0	NA	Intergenic	L2a|LINE|L2	-1086	NM_001002876	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
6606	chr1	28812051	28812530	+	0	NA	5' UTR (NM_000911, exon 1 of 3)	5' UTR (NM_000911, exon 1 of 3)	120	NM_000911	4985		NM_000911	ENSG00000116329	OPRD1	DOP|DOR|DOR1|OPRD	opioid receptor delta 1	protein-coding
108583	chr18	75203521	75203780	+	0	NA	intron (NM_175907, intron 1 of 1)	intron (NM_175907, intron 1 of 1)	1863	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
207235	chr7	43735751	43736050	+	0	NA	Intergenic	L1MEb|LINE|L1	-6359	NM_001350924	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
85909	chr16	57078801	57079850	+	0	NA	intron (NM_001384955, intron 44 of 47)	intron (NM_001384955, intron 44 of 47)	-13258	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
231584	chr9	131528951	131529750	+	0	NA	intron (NM_031432, intron 3 of 6)	intron (NM_031432, intron 3 of 6)	1913	NM_031432	83549		NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
81901	chr16	11726251	11726750	+	0	NA	intron (NR_136674, intron 3 of 8)	AluSc8|SINE|Alu	16357	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
105508	chr17	83104431	83104630	+	0	NA	Intergenic	Intergenic	23384	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
178471	chr4	148415471	148415630	+	0	NA	intron (NR_148974, intron 2 of 6)	intron (NR_148974, intron 2 of 6)	26864	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
100616	chr17	63549521	63551470	+	0	NA	promoter-TSS (NM_005828)	promoter-TSS (NM_005828)	18	NR_073585	10238		NM_005828	ENSG00000136485	DCAF7	AN11|HAN11|SWAN-1|WDR68	DDB1 and CUL4 associated factor 7	protein-coding
111009	chr19	3049551	3050380	+	0	NA	intron (NR_031672, intron 2 of 2).3	AluY|SINE|Alu	-2330	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
119941	chr19	41867221	41867700	+	0	NA	intron (NM_001321485, intron 3 of 5)	AluSx|SINE|Alu	-2167	NR_106855	102465478		NR_106855	ENSG00000276926	MIR6797	hsa-mir-6797	microRNA 6797	ncRNA
74488	chr15	60003451	60003780	+	0	NA	promoter-TSS (NM_012182)	promoter-TSS (NM_012182)	-696	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
114689	chr19	13115301	13115500	+	0	NA	exon (NM_001351760, exon 5 of 16)	exon (NM_001351760, exon 5 of 16)	1257	NM_017722	55621		NM_017722	ENSG00000104907	TRMT1	MRT68|TRM1	tRNA methyltransferase 1	protein-coding
200110	chr6	130201171	130201330	+	0	NA	intron (NM_001258275, intron 7 of 13)	intron (NM_001258275, intron 7 of 13)	14635	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
131928	chr2	98935971	98936950	+	0	NA	promoter-TSS (NM_207362)	promoter-TSS (NM_207362)	-235	NM_207362	343990		NM_207362	ENSG00000196872	CRACDL	C2orf55|KIAA1211L	CRACD like	protein-coding
22469	chr1	221707971	221708490	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	28670	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
75763	chr15	68558851	68558950	+	0	NA	intron (NM_001324014, intron 2 of 12)	MIRb|SINE|MIR	-20093	NM_006091	10391		NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
13182	chr1	112503801	112504130	+	0	NA	intron (NM_004185, intron 2 of 5)	intron (NM_004185, intron 2 of 5)	-5000	NM_024494	7482		NM_004185	ENSG00000134245	WNT2B	WNT13	Wnt family member 2B	protein-coding
223314	chr8	143812351	143813800	+	0	NA	promoter-TSS (NR_030633)	promoter-TSS (NR_030633)	-33	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
238514	chrX	153671821	153672280	+	0	NA	intron (NM_001366979, intron 4 of 11)	intron (NM_001366979, intron 4 of 11)	1238	NM_001135740	139728		NM_198452	ENSG00000130822	PNCK	BSTK3|CaMK1b	pregnancy up-regulated nonubiquitous CaM kinase	protein-coding
50109	chr12	44869321	44869980	+	0	NA	intron (NM_001145108, intron 2 of 19)	MLT1D-int|LTR|ERVL-MaLR	6011	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
101513	chr17	67778801	67779400	+	0	NA	Intergenic	AluYa5|SINE|Alu	38430	NR_003706	100124536		NR_003706	ENSG00000200394	SNORA38B	-	small nucleolar RNA, H/ACA box 38B	snoRNA
163636	chr3	52061201	52061600	+	0	NA	TTS (NR_027331)	TTS (NR_027331)	3712	NR_027331	100128378		NM_001123039		LINC00696	C3orf74	long intergenic non-protein coding RNA 696	ncRNA
52845	chr12	57092921	57093570	+	0	NA	intron (NM_001330305, intron 5 of 5)	G-rich|Low_complexity|Low_complexity	4131	NM_005967	4665		NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding
215288	chr7	157269721	157270180	+	0	NA	TTS (NM_014671)	TTS (NM_014671)	-67054	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
37132	chr11	13342951	13343250	+	0	NA	intron (NM_001351821, intron 3 of 19)	MIR|SINE|MIR	65310	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
218203	chr8	42011951	42013080	+	0	NA	intron (NM_001305878, intron 2 of 13)	MLT1D|LTR|ERVL-MaLR	-39235	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
121778	chr19	47774351	47774650	+	0	NA	Intergenic	AluJo|SINE|Alu	-4203	NM_003009	6415		NM_003009	ENSG00000178980	SELENOW	SEPW1|selW	selenoprotein W	protein-coding
219191	chr8	66605851	66606450	+	0	NA	intron (NM_001294282, intron 1 of 14)	MIRb|SINE|MIR	7068	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
144467	chr20	35602871	35603030	+	0	NA	intron (NR_119376, intron 9 of 42)	intron (NR_119376, intron 9 of 42)	4612	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
211652	chr7	106263021	106263280	+	0	NA	intron (NM_005746, intron 7 of 10)	intron (NM_005746, intron 7 of 10)	21833	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
58081	chr12	124565971	124566800	+	0	NA	intron (NM_001077261, intron 1 of 47)	CpG	1227	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
114717	chr19	13166251	13166350	+	0	NA	Intergenic	AluSx|SINE|Alu	15889	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
154797	chr22	36853371	36853900	+	0	NA	intron (NR_147197, intron 1 of 1)	LTR50|LTR|ERVL	-7371	NM_013416	4689		NM_000631	ENSG00000100365	NCF4	CGD3|NCF|P40PHOX|SH3PXD4	neutrophil cytosolic factor 4	protein-coding
70549	chr14	102529751	102530050	+	0	NA	Intergenic	Intergenic	-9744	NR_036192	100422954		NR_036192	ENSG00000266015	MIR4309	-	microRNA 4309	ncRNA
129743	chr2	70966571	70967450	+	0	NA	Intergenic	LTR85a|LTR|Gypsy?	-11435	NM_001369683	79998		NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
132603	chr2	108536351	108536650	+	0	NA	intron (NM_001371495, intron 1 of 10)	L1MD2|LINE|L1	2030	NM_001371495	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
126540	chr2	28568071	28568300	+	0	NA	intron (NM_153021, intron 20 of 57)	intron (NM_153021, intron 20 of 57)	1828	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
230786	chr9	128930971	128931130	+	0	NA	intron (NM_174933, intron 4 of 11)	MIR|SINE|MIR	8767	NM_001100877	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
208815	chr7	73649071	73649230	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-18681	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
149616	chr21	33382851	33384150	+	0	NA	Intergenic	Intergenic	-19396	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
189585	chr5	175534091	175534580	+	0	NA	Intergenic	Intergenic	55775	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
148299	chr20	63724651	63724750	+	0	NA	intron (NM_181485, intron 2 of 6)	AluSx3|SINE|Alu	-11001	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
199046	chr6	111477651	111477950	+	0	NA	intron (NM_001286432, intron 2 of 33)	L2b|LINE|L2	5418	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
92793	chr17	15958001	15958200	+	0	NA	intron (NM_000676, intron 1 of 1)	AluSp|SINE|Alu	13183	NM_000676	136		NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
66689	chr14	64084921	64085180	+	0	NA	intron (NM_015180, intron 57 of 114)	MLT1F2|LTR|ERVL-MaLR	10075	NR_031677	100313830		NR_031677	ENSG00000221537	MIR548H1	MIR548H-1|MIRN548H1	microRNA 548h-1	ncRNA
201885	chr6	150867951	150868250	+	0	NA	intron (NR_146720, intron 1 of 28)	intron (NR_146720, intron 1 of 28)	1614	NM_001350491	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
211902	chr7	112208271	112208630	+	0	NA	intron (NM_021994, intron 1 of 11)	intron (NM_021994, intron 1 of 11)	1755	NM_021994	11179		NM_021994	ENSG00000198839	ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
195158	chr6	35735371	35735530	+	0	NA	intron (NR_027117, intron 2 of 9)	intron (NR_027117, intron 2 of 9)	1497	NR_027117	285847		NR_027117		LOC285847	-	uncharacterized LOC285847	ncRNA
132953	chr2	111462971	111463500	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	31926	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
118900	chr19	38699721	38699980	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	44624	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
144225	chr20	34375921	34376450	+	0	NA	intron (NM_031483, intron 2 of 24)	intron (NM_031483, intron 2 of 24)	12912	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
10229	chr1	62908101	62908400	+	0	NA	Intergenic	Intergenic	102675	NR_146607	105378769		NR_146605	ENSG00000229537	LINC01739	-	long intergenic non-protein coding RNA 1739	ncRNA
80274	chr16	2234751	2235280	+	0	NA	intron (NM_004424, intron 12 of 13)	CpG-9091	-1429	NM_001374	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
198286	chr6	99868221	99868550	+	0	NA	Intergenic	Intergenic	-125653	NR_038384	728012		NR_038384	ENSG00000229315	MCHR2-AS1	-	MCHR2 antisense RNA 1	ncRNA
155854	chr22	39458721	39458980	+	0	NA	intron (NM_002409, intron 1 of 1)	L2b|LINE|L2	1838	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
188849	chr5	159206221	159206800	+	0	NA	intron (NM_001199380, intron 1 of 10)	intron (NM_001199380, intron 1 of 10)	1138	NM_001199382	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
164104	chr3	56653201	56653600	+	0	NA	intron (NM_015224, intron 4 of 16)	L1MEd|LINE|L1	10646	NM_015224	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
60723	chr13	44243221	44243500	+	0	NA	Intergenic	Intergenic	-47160	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
228687	chr9	107775351	107775530	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-285671	NM_001314052	9314		NM_004235	ENSG00000136826	KLF4	EZF|GKLF	KLF transcription factor 4	protein-coding
118650	chr19	37302501	37302780	+	0	NA	Intergenic	SST1|Satellite|centr	-10197	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
120164	chr19	42244101	42245530	+	0	NA	Intergenic	CpG	-2213	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
187220	chr5	140718701	140719250	+	0	NA	promoter-TSS (NR_026704)	promoter-TSS (NR_026704)	49	NR_026704	56663		NR_026704	ENSG00000202111	VTRNA1-2	HVG2|VAULTRC2|VR2|hvg-2	vault RNA 1-2	ncRNA
95827	chr17	38796871	38797850	+	0	NA	intron (NM_003559, intron 1 of 9).2	intron (NM_003559, intron 1 of 9).2	2545	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
218156	chr8	41903501	41903700	+	0	NA	Intergenic	Intergenic	-6859	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
56608	chr12	118103001	118104350	+	0	NA	5' UTR (NM_019086, exon 1 of 9)	5' UTR (NM_019086, exon 1 of 9)	336	NM_019086	54621		NM_019086	ENSG00000176834	VSIG10	-	V-set and immunoglobulin domain containing 10	protein-coding
183401	chr5	77844601	77845030	+	0	NA	Intergenic	CpG	-39841	NR_105012	101929154		NR_105012	ENSG00000287162	LOC101929154	-	uncharacterized LOC101929154	ncRNA
214678	chr7	150962871	150963700	+	0	NA	intron (NM_172056, intron 2 of 8)	MIRb|SINE|MIR	-7456	NM_172057	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
89409	chr16	88834001	88834400	+	0	NA	intron (NM_000512, intron 8 of 13)	intron (NM_000512, intron 8 of 13)	-22020	NR_134671	51693		NM_016209	ENSG00000167515	TRAPPC2L	HSPC176|PERRB	trafficking protein particle complex subunit 2L	protein-coding
123232	chr19	52939551	52939730	+	0	NA	intron (NM_001202473, intron 3 of 3)	intron (NM_001202473, intron 3 of 3)	2954	NR_037805	399669		NM_203307	ENSG00000293246	ZNF321P	ZNF321	zinc finger protein 321, pseudogene	pseudo
77094	chr15	78920651	78920950	+	0	NA	TTS (NM_004390)	TTS (NM_004390)	24246	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
221617	chr8	125645771	125646330	+	0	NA	Intergenic	MER91C|DNA|hAT-Tip100	213841	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
232250	chr9	134399471	134400400	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	-6625	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
124752	chr2	6919571	6919730	+	0	NA	promoter-TSS (NR_033997)	promoter-TSS (NR_033997)	856	NM_001349184	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
175410	chr4	70900951	70901200	+	0	NA	Intergenic	Intergenic	-1294	NM_001244766	92597		NM_173468	ENSG00000173542	MOB1B	MATS2|MOB4A|MOBKL1A	MOB kinase activator 1B	protein-coding
149182	chr21	20997221	20998500	+	0	NA	promoter-TSS (NM_001352596)	promoter-TSS (NM_001352596)	-549	NM_001352595	4685		NM_004540	ENSG00000154654	NCAM2	NCAM21	neural cell adhesion molecule 2	protein-coding
191216	chr6	5667571	5668130	+	0	NA	intron (NR_110842, intron 3 of 3)	intron (NR_110842, intron 3 of 3)	27422	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
103360	chr17	78113721	78114730	+	0	NA	intron (NM_001375353, intron 18 of 19)	MLT1D|LTR|ERVL-MaLR	14530	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
115279	chr19	14559771	14560200	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	12081	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
205341	chr7	12683821	12684280	+	0	NA	Intergenic	Intergenic	-2777	NM_212460	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
197581	chr6	79928471	79928630	+	0	NA	intron (NM_022726, intron 1 of 5)	intron (NM_022726, intron 1 of 5)	19003	NM_022726	6785		NM_022726	ENSG00000118402	ELOVL4	ADMD|CT118|ISQMR|SCA34|STGD2|STGD3	ELOVL fatty acid elongase 4	protein-coding
169808	chr3	177056571	177057330	+	0	NA	intron (NM_001374330, intron 2 of 14)	L2c|LINE|L2	139528	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
16990	chr1	155981151	155982100	+	0	NA	Intergenic	Intergenic	-2065	NM_001350112	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
3479	chr1	15975221	15976680	+	0	NA	intron (NM_001324138, intron 1 of 14)	CpG	151	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
730	chr1	1466321	1466580	+	0	NA	intron (NM_001039211, intron 11 of 11)	AluYh3a3|SINE|Alu	-5315	NM_031921	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
15171	chr1	149061171	149061530	+	0	NA	exon (NM_001037675, exon 18 of 21)	exon (NM_001037675, exon 18 of 21)	20961	NM_001277444	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
11179	chr1	87330541	87330650	+	0	NA	intron (NM_006769, intron 1 of 4)	intron (NM_006769, intron 1 of 4)	-1149	NM_001369491	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
92344	chr17	8170201	8171000	+	0	NA	Intergenic	Intergenic	2988	NR_033294	727676		NR_033294	ENSG00000200463	SNORD118	LCC|U8	small nucleolar RNA, C/D box 118	snoRNA
81124	chr16	4385371	4386850	+	0	NA	intron (NM_001351729, intron 9 of 27)	intron (NM_001351729, intron 9 of 27)	14262	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
221789	chr8	127961501	127961700	+	0	NA	TTS (NR_031610)	TTS (NR_031610)	967	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
37606	chr11	19970851	19971350	+	0	NA	intron (NM_145117, intron 10 of 37)	intron (NM_145117, intron 10 of 37)	-51456	NM_001111019	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
27717	chr10	33486971	33487380	+	0	NA	Intergenic	Intergenic	-152270	NR_045259	8829		NM_003873	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
163055	chr3	49929321	49930380	+	0	NA	exon (NM_001142501, exon 1 of 5)	exon (NM_001142501, exon 1 of 5)	162	NM_032355	84315		NM_032355	ENSG00000164077	MON1A	SAND1	MON1 homolog A, secretory trafficking associated	protein-coding
122509	chr19	49590901	49592700	+	0	NA	TTS (NM_001316335)	TTS (NM_001316335)	618	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
184177	chr5	95816321	95816880	+	0	NA	exon (NM_001243659, exon 2 of 3)	exon (NM_001243659, exon 2 of 3)	6126	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
60881	chr13	46124121	46124830	+	0	NA	Intergenic	Intergenic	-19399	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
154046	chr22	30575771	30576530	+	0	NA	TTS (NM_001282327)	TTS (NM_001282327)	-1485	NM_001318104	9514		NM_004861	ENSG00000128242	GAL3ST1	CST	galactose-3-O-sulfotransferase 1	protein-coding
167761	chr3	132550021	132550480	+	0	NA	Intergenic	Intergenic	-47020	NM_016557	51554		NM_016557	ENSG00000129048	ACKR4	CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding
199797	chr6	127120771	127120930	+	0	NA	intron (NM_032784, intron 1 of 4)	intron (NM_032784, intron 1 of 4)	2179	NM_032784	84870		NM_032784	ENSG00000146374	RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
228719	chr9	109112401	109113150	+	0	NA	intron (NM_032012, intron 1 of 17)	intron (NM_032012, intron 1 of 17)	7172	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
167490	chr3	129172201	129173130	+	0	NA	intron (NM_001127196, intron 1 of 4)	(ACAG)n|Simple_repeat|Simple_repeat	11231	NM_001127196	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
16965	chr1	155943501	155943700	+	0	NA	TTS (NM_181885)	TTS (NM_181885)	1962	NM_181885	339403		NM_181885	ENSG00000173080	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin family peptide/INSL5 receptor 4	protein-coding
170539	chr3	186753051	186753150	+	0	NA	Intergenic	Intergenic	-30477	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
15878	chr1	151494821	151495080	+	0	NA	Intergenic	Intergenic	-16437	NM_020770	57530		NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
158428	chr22	50560971	50563880	+	0	NA	intron (NM_001123225, intron 1 of 2)	CpG	494	NM_001123225	644186		NM_001123225	ENSG00000217442	SYCE3	C22orf41|THEG2	synaptonemal complex central element protein 3	protein-coding
151625	chr22	15499951	15500150	+	0	NA	Intergenic	(TAGGGGT)n|Simple_repeat|Simple_repeat	-28109	NM_001005239	81061		NM_001005239	ENSG00000130538	OR11H1	OR11H12|OR22-1	olfactory receptor family 11 subfamily H member 1	protein-coding
83389	chr16	26645271	26645800	+	0	NA	Intergenic	Intergenic	-421392	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
212967	chr7	130967851	130968730	+	0	NA	intron (NR_109851, intron 4 of 5)	MIR|SINE|MIR	54826	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
60188	chr13	40337051	40337150	+	0	NA	Intergenic	L1M6|LINE|L1	-116598	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
100182	chr17	58656251	58657680	+	0	NA	intron (NM_198393, intron 1 of 32)	intron (NM_198393, intron 1 of 32)	35080	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
40571	chr11	64354021	64354430	+	0	NA	intron (NM_032251, intron 24 of 26)	intron (NM_032251, intron 24 of 26)	-4937	NM_001300802	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
117162	chr19	19333801	19334200	+	0	NA	intron (NM_015329, intron 1 of 18)	intron (NM_015329, intron 1 of 18)	13171	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
67825	chr14	73848851	73849530	+	0	NA	Intergenic	AluJb|SINE|Alu	-2641	NM_001146154	145482		NM_152444	ENSG00000140043	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
196138	chr6	42423151	42423850	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	28551	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
125486	chr2	12495621	12496080	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-221022	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
171187	chr3	195683751	195684250	+	0	NA	intron (NR_003265, intron 14 of 14)	intron (NR_003265, intron 14 of 14)	-4498	NR_122105	440993		NM_001013714		MIR570HG	LINC00969	MIR570 host gene	ncRNA
18858	chr1	167761721	167762380	+	0	NA	intron (NM_001146191, intron 1 of 2)	L2|LINE|L2	40068	NM_024569	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
34425	chr10	132409671	132409830	+	0	NA	intron (NM_138499, intron 2 of 2)	L2b|LINE|L2	12550	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
36748	chr11	9315951	9316550	+	0	NA	Intergenic	AluSp|SINE|Alu	-1657	NM_001165030	440026		NM_015012	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
156882	chr22	42137101	42137700	+	0	NA	non-coding (NR_034118, exon 2 of 2)	non-coding (NR_034118, exon 2 of 2)	1204	NR_034118	100132273		NR_034118	ENSG00000237037	NDUFA6-DT	NDUFA6-AS1	NDUFA6 divergent transcript	ncRNA
74215	chr15	56215801	56216000	+	0	NA	intron (NM_001370561, intron 4 of 11)	MLT1F1|LTR|ERVL-MaLR	-25968	NM_001368074	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
120505	chr19	44800451	44801400	+	0	NA	TTS (NM_001130852)	TTS (NM_001130852)	-8134	NM_001013257	4059		NM_005581	ENSG00000187244	BCAM	AU|B-CAM|CD239|F8/G253|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
213135	chr7	131370221	131370930	+	0	NA	intron (NM_001321316, intron 1 of 17)	intron (NM_001321316, intron 1 of 17)	42699	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
34373	chr10	132257121	132257980	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	-8442	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
27925	chr10	41908321	41908750	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	459510	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
73104	chr15	41111751	41112050	+	0	NA	intron (NR_104038, intron 1 of 34)	intron (NR_104038, intron 1 of 34)	4346	NR_104038	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
231532	chr9	131439121	131439380	+	0	NA	intron (NM_013318, intron 5 of 31)	intron (NM_013318, intron 5 of 31)	45164	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
40620	chr11	64691001	64691200	+	0	NA	intron (NM_015080, intron 4 of 22)	intron (NM_015080, intron 4 of 22)	32097	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
172535	chr4	2354921	2355380	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	9664	NM_001172660	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
113707	chr19	10429451	10429780	+	0	NA	intron (NM_001111307, intron 1 of 14)	AluJo|SINE|Alu	-1230	NM_001111308	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
18151	chr1	160758871	160759030	+	0	NA	Intergenic	AluJb|SINE|Alu	19703	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
178117	chr4	141332701	141332980	+	0	NA	promoter-TSS (NR_121625)	promoter-TSS (NR_121625)	-223	NR_121625	100507639		NR_121625	ENSG00000248810	LINC02432	-	long intergenic non-protein coding RNA 2432	ncRNA
148726	chr21	7051451	7051550	+	0	NA	intron (NM_001322036, intron 1 of 2).4	L1M3a|LINE|L1	2641	NM_001322044	102724219		NM_001322044		LINC03104	-	long intergenic non-protein coding RNA 3104	ncRNA
182140	chr5	56264401	56264650	+	0	NA	Intergenic	Intergenic	-31195	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
239523	chrY	56843601	56843880	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-110515	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
164565	chr3	63999471	63999830	+	0	NA	3' UTR (NM_001128149, exon 9 of 9)	3' UTR (NM_001128149, exon 9 of 9)	-4372	NR_038286	100507062		NR_038286	ENSG00000239653	PSMD6-AS2	-	PSMD6 antisense RNA 2	ncRNA
236720	chrX	78092021	78092600	+	0	NA	Intergenic	L1M1|LINE|L1	-11938	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
137985	chr2	201228721	201229180	+	0	NA	exon (NM_032974, exon 10 of 10)	exon (NM_032974, exon 10 of 10)	-4493	NM_001228	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
194785	chr6	34182651	34183450	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-27428	NM_001256809	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
219571	chr8	79612651	79612850	+	0	NA	intron (NM_001199214, intron 1 of 5)	CpG	1633	NM_007029	11075		NM_007029	ENSG00000104435	STMN2	SCG10|SCGN10	stathmin 2	protein-coding
109070	chr18	79913921	79915000	+	0	NA	intron (NM_001146343, intron 3 of 3)	intron (NM_001146343, intron 3 of 3)	37193	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
90796	chr17	2185251	2185830	+	0	NA	intron (NM_001256827, intron 5 of 11)	intron (NM_001256827, intron 5 of 11)	-47138	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
79618	chr16	1099651	1099950	+	0	NA	Intergenic	MIRc|SINE|MIR	-3556	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
209918	chr7	92425571	92425930	+	0	NA	intron (NR_145992, intron 5 of 9)	intron (NR_145992, intron 5 of 9)	11564	NR_145992	105375396		NM_001317905	ENSG00000293397	TMBIM7P	-	transmembrane BAX inhibitor motif containing 7, pseudogene	pseudo
20981	chr1	202628121	202628380	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	15203	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
91098	chr17	3657021	3657280	+	0	NA	intron (NM_001374494, intron 8 of 10)	intron (NM_001374494, intron 8 of 10)	11428	NM_014604	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
214351	chr7	149500121	149500750	+	0	NA	Intergenic	Intergenic	-2626	NM_152557	155061		NM_152557	ENSG00000181220	ZNF746	PARIS	zinc finger protein 746	protein-coding
905	chr1	1684051	1684800	+	0	NA	intron (NM_001110781, intron 1 of 8)	MER47A|DNA|TcMar-Tigger	8370	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
224304	chr9	6567151	6567450	+	0	NA	intron (NM_000170, intron 15 of 24)	intron (NM_000170, intron 15 of 24)	78429	NM_000170	2731		NM_000170	ENSG00000178445	GLDC	GCE|GCE1|GCSP|HYGN1	glycine decarboxylase	protein-coding
126018	chr2	25335101	25335400	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	-6529	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
35190	chr11	793651	794630	+	0	NA	intron (NM_024698, intron 4 of 9)	intron (NM_024698, intron 4 of 9)	2098	NM_024698	79751		NM_024698	ENSG00000177542	SLC25A22	DEE3|EIEE3|GC-1|GC1|NET44	solute carrier family 25 member 22	protein-coding
202476	chr6	158239371	158239680	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	71175	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
150071	chr21	37398471	37399250	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	-20045	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
36971	chr11	11789771	11790030	+	0	NA	Intergenic	L1MC4a|LINE|L1	-6678	NR_107037	102465870		NR_107037	ENSG00000278529	MIR8070	hsa-mir-8070	microRNA 8070	ncRNA
226970	chr9	81656001	81656200	+	0	NA	intron (NM_001303104, intron 4 of 19)	intron (NM_001303104, intron 4 of 19)	33435	NM_001303104	7088		NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1|TLE-1	TLE family member 1, transcriptional corepressor	protein-coding
227265	chr9	89367101	89368250	+	0	NA	intron (NR_163887, intron 13 of 15)	intron (NR_163887, intron 13 of 15)	48824	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
21243	chr1	204357571	204357730	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	2279	NM_014935	22874		NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
59623	chr13	27978201	27978530	+	0	NA	exon (NM_001105577, exon 2 of 2)	exon (NM_001105577, exon 2 of 2)	-8997	NM_001354700	1045		NM_001265	ENSG00000165556	CDX2	CDX-3|CDX2/AS|CDX3	caudal type homeobox 2	protein-coding
96201	chr17	39757901	39758680	+	0	NA	3' UTR (NM_001257414, exon 5 of 5)	3' UTR (NM_001257414, exon 5 of 5)	18323	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
224031	chr9	3476471	3476630	+	0	NA	intron (NM_001282116, intron 1 of 16)	intron (NM_001282116, intron 1 of 16)	12884	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
36302	chr11	3835951	3836050	+	0	NA	intron (NM_001665, intron 1 of 1)	intron (NM_001665, intron 1 of 1)	4959	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
53052	chr12	57626051	57626550	+	0	NA	TTS (NR_166678)	TTS (NR_166678)	-4397	NR_120450	101927583		NR_120450		LOC101927583	-	uncharacterized LOC101927583	ncRNA
35165	chr11	768371	769130	+	0	NA	non-coding (NR_134867, exon 7 of 7)	non-coding (NR_134867, exon 7 of 7)	8737	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
142843	chr20	17574201	17574800	+	0	NA	intron (NM_006870, intron 1 of 3)	intron (NM_006870, intron 1 of 3)	4425	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
135876	chr2	170975951	170976480	+	0	NA	Intergenic	Intergenic	46962	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
70832	chr14	103635451	103636350	+	0	NA	intron (NM_001130107, intron 1 of 15)	MIRb|SINE|MIR	6712	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
168036	chr3	136910121	136910780	+	0	NA	intron (NM_001291999, intron 1 of 3)	L1M4c|LINE|L1	-20052	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
20792	chr1	201112451	201112780	+	0	NA	promoter-TSS (NM_000069)	promoter-TSS (NM_000069)	-189	NM_000069	779		NM_000069	ENSG00000081248	CACNA1S	CACNL1A3|CCHL1A3|CMYP18|Cav1.1|DHPRM|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP	calcium voltage-gated channel subunit alpha1 S	protein-coding
57746	chr12	122948771	122949130	+	0	NA	intron (NM_203444, intron 4 of 11)	intron (NM_203444, intron 4 of 11)	17513	NM_001243014	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
53544	chr12	67426001	67426200	+	0	NA	Intergenic	Intergenic	16459	NR_146500	102724433		NR_146500	ENSG00000256172	LINC02420	-	long intergenic non-protein coding RNA 2420	ncRNA
140070	chr2	231436951	231437250	+	0	NA	Intergenic	Intergenic	18836	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
207828	chr7	50328651	50329100	+	0	NA	intron (NM_001291840, intron 2 of 2)	AluYm1|SINE|Alu	9827	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
164472	chr3	59940151	59940450	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	140609	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
24081	chr1	235324551	235324930	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJb|SINE|Alu	-2476	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
13558	chr1	115648921	115649180	+	0	NA	intron (NM_001172412, intron 1 of 7)	intron (NM_001172412, intron 1 of 7)	6421	NM_001172412	81839		NM_138959	ENSG00000173218	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding
66982	chr14	66511971	66512250	+	0	NA	intron (NM_020806, intron 1 of 22)	intron (NM_020806, intron 1 of 22)	3963	NM_001377516	10243		NM_020806	ENSG00000171723	GPHN	GEPH|GPH|GPHRYN|HKPX1|MOCODC	gephyrin	protein-coding
29341	chr10	69427071	69427980	+	0	NA	Intergenic	Intergenic	-10607	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
146939	chr20	52031671	52032430	+	0	NA	Intergenic	Intergenic	73434	NM_001319146	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
233184	chr9	137196601	137197100	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	3891	NM_001128228	286262		NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79	taperin	protein-coding
179638	chr4	186201771	186202500	+	0	NA	intron (NM_207352, intron 7 of 10)	MIR3|SINE|MIR	10568	NM_207352	285440		NM_207352	ENSG00000145476	CYP4V2	BCD|CYP4AH1	cytochrome P450 family 4 subfamily V member 2	protein-coding
214857	chr7	151349671	151350830	+	0	NA	intron (NM_016118, intron 3 of 14)	LTR13|LTR|ERVK	8438	NM_016118	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
152220	chr22	20137851	20138230	+	0	NA	intron (NM_001185024, intron 1 of 10)	intron (NM_001185024, intron 1 of 10)	6236	NM_013373	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
102424	chr17	75646101	75646750	+	0	NA	5' UTR (NM_001162997, exon 1 of 2)	5' UTR (NM_001162997, exon 1 of 2)	174	NM_001162997	100130933		NM_001162997	ENSG00000259120	SMIM6	C17orf110|ELN	small integral membrane protein 6	protein-coding
50867	chr12	49180051	49180830	+	0	NA	Intergenic	AluJb|SINE|Alu	8640	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
127631	chr2	43129451	43130380	+	0	NA	Intergenic	Intergenic	-27470	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
189904	chr5	177355221	177355730	+	0	NA	Intergenic	Intergenic	-2449	NM_006480	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
108755	chr18	77119801	77120480	+	0	NA	intron (NM_001025100, intron 1 of 3)	CpG	12643	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
67599	chr14	72514101	72514330	+	0	NA	intron (NM_001370288, intron 14 of 16)	intron (NM_001370288, intron 14 of 16)	-2605	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
60206	chr13	40479651	40479750	+	0	NA	intron (NR_024505, intron 1 of 6)	intron (NR_024505, intron 1 of 6)	1306	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
130748	chr2	86805721	86806580	+	0	NA	intron (NR_168478, intron 1 of 7)	intron (NR_168478, intron 1 of 7)	1892	NR_168479	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
154079	chr22	30802771	30803330	+	0	NA	intron (NM_001282740, intron 1 of 12)	intron (NM_001282740, intron 1 of 12)	-19466	NM_001282741	23762		NM_030758	ENSG00000184792	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
236173	chrX	65528451	65529180	+	0	NA	intron (NR_164681, intron 6 of 14)	MIR3|SINE|MIR	5972	NM_001375329	81887		NM_031206	ENSG00000001497	LAS1L	Las1|Las1-like|MRXSWTS|WTS|dJ475B7.2	LAS1 like ribosome biogenesis factor	protein-coding
65840	chr14	54906121	54906380	+	0	NA	Intergenic	MER21A|LTR|ERVL	-3424	NM_001024071	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
210359	chr7	99577671	99577930	+	0	NA	Intergenic	Intergenic	18966	NM_001363334	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
2487	chr1	9678071	9678780	+	0	NA	intron (NR_126367, intron 1 of 1)	AluJb|SINE|Alu	9149	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
143388	chr20	29079921	29080680	+	0	NA	promoter-TSS (NR_132316)	promoter-TSS (NR_132316)	-90	NR_132316	102723316		NR_132316		FRG1DP	-	FSHD region gene 1 family member D, pseudogene	pseudo
124880	chr2	8325621	8326080	+	0	NA	intron (NR_152741, intron 1 of 9)	intron (NR_152741, intron 1 of 9)	2569	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
103113	chr17	77370371	77370700	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	-2802	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
142221	chr20	3080801	3081600	+	0	NA	Intergenic	Intergenic	3524	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
49224	chr12	19126471	19126630	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-3183	NM_019012	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
220039	chr8	91793721	91793980	+	0	NA	Intergenic	L1PA3|LINE|L1	223830	NM_175636	862		NM_004349	ENSG00000079102	RUNX1T1	AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	RUNX1 partner transcriptional co-repressor 1	protein-coding
235824	chrX	49275071	49275700	+	0	NA	intron (NM_033215, intron 1 of 3)	L2|LINE|L2	5592	NM_033215	89801		NM_033215	ENSG00000049769	PPP1R3F	HB2E|LL0XNC01-7P3.1|R3F	protein phosphatase 1 regulatory subunit 3F	protein-coding
160133	chr3	20050871	20051630	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	10804	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
117934	chr19	33134651	33135450	+	0	NA	intron (NM_173479, intron 1 of 10)	intron (NM_173479, intron 1 of 10)	2936	NM_173479	126248		NM_173479	ENSG00000166359	WDR88	PQWD	WD repeat domain 88	protein-coding
115246	chr19	14523101	14524230	+	0	NA	intron (NM_001313964, intron 2 of 3)	AluSx1|SINE|Alu	-5268	NM_006145	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
189654	chr5	176237971	176239300	+	0	NA	exon (NM_198567, exon 1 of 9)	exon (NM_198567, exon 1 of 9)	211	NR_131772	375484		NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1|PLEIAD	SUMO interacting motifs containing 1	protein-coding
216121	chr8	11304351	11304680	+	0	NA	intron (NM_015458, intron 3 of 9)	L3|LINE|CR1	19699	NM_015458	66036		NM_015458	ENSG00000104643	MTMR9	C8orf9|LIP-STYX|MTMR8	myotubularin related protein 9	protein-coding
134470	chr2	143246971	143247650	+	0	NA	intron (NM_018460, intron 5 of 13)	LTR32|LTR|ERVL	117891	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
18410	chr1	161442001	161442430	+	0	NA	Intergenic	CpG	-63242	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
39246	chr11	57698621	57699330	+	0	NA	exon (NM_015457, exon 11 of 12)	exon (NM_015457, exon 11 of 12)	13240	NR_157587	219541		NM_153450	ENSG00000156603	MED19	DT2P1G7|LCMR1|MED19AS	mediator complex subunit 19	protein-coding
231655	chr9	131656421	131657530	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-5572	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
89521	chr16	89175301	89177280	+	0	NA	intron (NM_004933, intron 1 of 13)	intron (NM_004933, intron 1 of 13)	4542	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
238458	chrX	152941151	152942350	+	0	NA	promoter-TSS (NM_001178115)	promoter-TSS (NM_001178115)	79	NM_001178115	7739		NM_007150	ENSG00000147394	ZNF185	SCELL	zinc finger protein 185 with LIM domain	protein-coding
66791	chr14	64707251	64708100	+	0	NA	intron (NM_001308147, intron 1 of 16)	L2a|LINE|L2	3251	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
172902	chr4	3485121	3485800	+	0	NA	intron (NM_001256896, intron 1 of 3)	intron (NM_001256896, intron 1 of 3)	916	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
74654	chr15	60916371	60917500	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	235366	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
169977	chr3	179346521	179346960	+	0	NA	promoter-TSS (NM_033540)	promoter-TSS (NM_033540)	-969	NM_033540	55669		NM_017927	ENSG00000171109	MFN1	hfzo1|hfzo2	mitofusin 1	protein-coding
205525	chr7	18509151	18509330	+	0	NA	promoter-TSS (NM_001204148)	promoter-TSS (NM_001204148)	-30	NM_001204148	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
91964	chr17	7391251	7391550	+	0	NA	intron (NM_001201576, intron 6 of 7).2	intron (NM_001201576, intron 6 of 7).2	3125	NM_020360	57048		NM_020360	ENSG00000187838	PLSCR3	-	phospholipid scramblase 3	protein-coding
186550	chr5	138458421	138458680	+	0	NA	Intergenic	Intergenic	-6929	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
188876	chr5	159431571	159431730	+	0	NA	Intergenic	Intergenic	34626	NR_027110	285627		NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
120932	chr19	45666151	45666900	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1696	NM_001308418	2696		NM_000164	ENSG00000010310	GIPR	PGQTL2	gastric inhibitory polypeptide receptor	protein-coding
189753	chr5	176618851	176619680	+	0	NA	TTS (NM_001363140)	TTS (NM_001363140)	-9109	NM_052899	114787		NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
197306	chr6	72613471	72614030	+	0	NA	Intergenic	Intergenic	-8314	NM_001160132	56479		NM_019842	ENSG00000185760	KCNQ5	Kv7.5|MRD46	potassium voltage-gated channel subfamily Q member 5	protein-coding
231905	chr9	133089271	133089630	+	0	NA	Intergenic	MER51E|LTR|ERV1	6911	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
85602	chr16	53536651	53536980	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-33511	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
200445	chr6	135051001	135051700	+	0	NA	intron (NM_006620, intron 1 of 17)	intron (NM_006620, intron 1 of 17)	3472	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
172652	chr4	2598621	2599230	+	0	NA	intron (NM_001366318, intron 2 of 20)	L1ME1|LINE|L1	-26507	NM_003704	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
164	chr1	605351	606500	+	0	NA	Intergenic	Intergenic	23084	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
177735	chr4	122453571	122453930	+	0	NA	exon (NM_000586, exon 3 of 4)	exon (NM_000586, exon 3 of 4)	2975	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
58844	chr12	132887051	132888630	+	0	NA	promoter-TSS (NM_001161344)	promoter-TSS (NM_001161344)	-2	NR_110919	101928530		NR_110919	ENSG00000236617	CHFR-DT	-	CHFR divergent transcript	ncRNA
77324	chr15	82489771	82490000	+	0	NA	intron (NR_026811, intron 1 of 7)	HERVI-int|LTR|ERV1	24110	NR_102747	727751		NR_102747		LOC727751	-	golgin A2 pseudogene	pseudo
61153	chr13	48817001	48817490	+	0	NA	Intergenic	Intergenic	-158667	NM_001079673	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
223802	chr8	144790071	144790230	+	0	NA	intron (NM_033301, intron 5 of 5)	intron (NM_033301, intron 5 of 5)	1841	NR_106909	102465978		NR_106909	ENSG00000283764	MIR6850	hsa-mir-6850	microRNA 6850	ncRNA
51905	chr12	53624601	53625000	+	0	NA	5' UTR (NM_001366562, exon 1 of 4)	5' UTR (NM_001366562, exon 1 of 4)	1190	NM_001366562	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
162561	chr3	48652921	48653300	+	0	NA	exon (NM_001407, exon 10 of 35)	exon (NM_001407, exon 10 of 35)	-8830	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
159553	chr3	14673551	14673930	+	0	NA	Intergenic	Intergenic	-1401	NM_001184957	84077		NM_032137	ENSG00000131379	C3orf20	-	chromosome 3 open reading frame 20	protein-coding
127709	chr2	43239151	43239450	+	0	NA	intron (NR_144316, intron 35 of 36)	intron (NR_144316, intron 35 of 36)	12089	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
174531	chr4	40188521	40189430	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2105	NM_001278368	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
6007	chr1	27014201	27014800	+	0	NA	Intergenic	AluJb|SINE|Alu	-1650	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
156750	chr22	41831201	41831750	+	0	NA	non-coding (NR_157279, exon 2 of 2)	non-coding (NR_157279, exon 2 of 2)	-1630	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
177869	chr4	128574671	128574930	+	0	NA	Intergenic	Intergenic	146784	NR_125882	100507487		NR_125882	ENSG00000251432	LINC02615	-	long intergenic non-protein coding RNA 2615	ncRNA
135849	chr2	170817571	170817730	+	0	NA	intron (NM_013445, intron 1 of 6)	CpG	763	NM_000817	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
205847	chr7	24910651	24911950	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	-18679	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
198663	chr6	107832451	107833130	+	0	NA	Intergenic	Intergenic	-8477	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
30872	chr10	86755921	86757580	+	0	NA	5' UTR (NM_004329, exon 1 of 13)	5' UTR (NM_004329, exon 1 of 13)	131	NM_004329	657		NM_004329	ENSG00000107779	BMPR1A	10q23del|ACVRLK3|ALK-3|ALK3|BMPR-1A|CD292|SKR5	bone morphogenetic protein receptor type 1A	protein-coding
192781	chr6	26537901	26539250	+	0	NA	intron (NM_006353, intron 1 of 1)	CpG	209	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
52933	chr12	57428951	57429050	+	0	NA	intron (NM_001351207, intron 1 of 26)	AluSx1|SINE|Alu	2043	NM_001351212	22864		NM_014925	ENSG00000179912	R3HDM2	CAG6|PR01365	R3H domain containing 2	protein-coding
174816	chr4	48133951	48135100	+	0	NA	promoter-TSS (NM_003328)	promoter-TSS (NM_003328)	-275	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
157140	chr22	42828201	42829180	+	0	NA	intron (NM_001142293, intron 5 of 14)	AluSz6|SINE|Alu	28583	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
83187	chr16	23487501	23488080	+	0	NA	intron (NM_015044, intron 6 of 16)	intron (NM_015044, intron 6 of 16)	22704	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
147141	chr20	56357521	56357930	+	0	NA	Intergenic	AluJb|SINE|Alu	-1249	NM_080821	116151		NM_080821	ENSG00000124098	FAM210B	5A3|C20orf108|dJ1167H4.1	family with sequence similarity 210 member B	protein-coding
89670	chr16	89370171	89370850	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	50058	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
28036	chr10	43233301	43233730	+	0	NA	intron (NM_145313, intron 1 of 12)	L1ME3A|LINE|L1	-3776	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
103736	chr17	78879501	78880480	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	23211	NM_001243540	100653515		NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
219820	chr8	81668771	81668930	+	0	NA	intron (NM_001144879, intron 6 of 7)	MSTC-int|LTR|ERVL-MaLR	17475	NM_005536	3612		NM_005536	ENSG00000133731	IMPA1	IMP|IMPA|MRT59	inositol monophosphatase 1	protein-coding
96886	chr17	42109851	42109950	+	0	NA	intron (NM_024119, intron 5 of 13)	AluSx|SINE|Alu	2814	NM_024119	79132		NM_024119	ENSG00000108771	DHX58	D11LGP2|D11lgp2e|LGP2|RLR-3	DExH-box helicase 58	protein-coding
202449	chr6	158039451	158039850	+	0	NA	intron (NM_003898, intron 4 of 26)	intron (NM_003898, intron 4 of 26)	22557	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
146751	chr20	50816651	50817030	+	0	NA	intron (NM_198799, intron 1 of 4)	AluSc8|SINE|Alu	21779	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
132447	chr2	105852171	105852600	+	0	NA	intron (NM_001004720, intron 1 of 3)	intron (NM_001004720, intron 1 of 3)	538	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
76931	chr15	78063021	78063380	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	14452	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
104256	chr17	80753101	80753500	+	0	NA	intron (NM_020761, intron 5 of 33)	intron (NM_020761, intron 5 of 33)	52332	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
49712	chr12	31179821	31180080	+	0	NA	intron (NR_153414, intron 7 of 44)	intron (NR_153414, intron 7 of 44)	21285	NR_153414	144203		NM_173498	ENSG00000177359	OVOS2	-	alpha-2-macroglobulin like 1 pseudogene	pseudo
11377	chr1	89652521	89653380	+	0	NA	intron (NM_032270, intron 1 of 2)	L2a|LINE|L2	19830	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
160716	chr3	32421851	32422500	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	30322	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
32489	chr10	102678801	102679030	+	0	NA	intron (NM_004311, intron 5 of 5)	intron (NM_004311, intron 5 of 5)	34420	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
42417	chr11	69067571	69068330	+	0	NA	intron (NM_139075, intron 8 of 24)	intron (NM_139075, intron 8 of 24)	-15226	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
25940	chr10	11358151	11358250	+	0	NA	Intergenic	L1MD1|LINE|L1	-13526	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
11668	chr1	91819551	91819850	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	66451	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
88085	chr16	81498571	81498730	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	3296	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
198764	chr6	108685971	108686230	+	0	NA	Intergenic	Intergenic	-65554	NR_033376	387111		NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
226699	chr9	75108601	75109080	+	0	NA	intron (NM_012383, intron 1 of 9)	intron (NM_012383, intron 1 of 9)	20326	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
6497	chr1	28504351	28504750	+	0	NA	Intergenic	L1MB3|LINE|L1	-1393	NR_002909	8420		NR_002909	ENSG00000242125	SNHG3	NCRNA00014|RNU17C|RNU17D|U17HG|U17HG-A|U17HG-AB	small nucleolar RNA host gene 3	ncRNA
4299	chr1	20154651	20154950	+	0	NA	non-coding (NR_168501, exon 1 of 1)	non-coding (NR_168501, exon 1 of 1)	586	NR_168501	117779438		NR_168501	ENSG00000227066	LOC117779438	-	uncharacterized LOC117779438	ncRNA
77968	chr15	89378841	89379730	+	0	NA	intron (NR_133001, intron 3 of 6)	CpG-8578	1243	NR_015411	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
80754	chr16	3156201	3156730	+	0	NA	Intergenic	Intergenic	12174	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
199542	chr6	118812171	118812330	+	0	NA	Intergenic	L1MC4|LINE|L1	29542	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
168584	chr3	149019301	149020150	+	0	NA	intron (NM_001184721, intron 5 of 5)	intron (NM_001184721, intron 5 of 5)	28185	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
137492	chr2	197147901	197148100	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-49991	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
82841	chr16	21506571	21507900	+	0	NA	Intergenic	Intergenic	-1100	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
26882	chr10	25934101	25934300	+	0	NA	promoter-TSS (NR_120650)	promoter-TSS (NR_120650)	-29	NM_017433	53904		NM_017433	ENSG00000095777	MYO3A	DFNA90|DFNB30	myosin IIIA	protein-coding
117078	chr19	19083621	19083880	+	0	NA	intron (NM_178526, intron 1 of 7)	intron (NM_178526, intron 1 of 7)	19756	NM_178526	284439		NM_178526	ENSG00000181035	SLC25A42	MECREN	solute carrier family 25 member 42	protein-coding
201151	chr6	142919171	142919330	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	25926	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
209692	chr7	82572271	82572430	+	0	NA	Intergenic	Intergenic	-128394	NM_001366867	781		NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|DEE110|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding
217910	chr8	37900971	37901530	+	0	NA	Intergenic	L2b|LINE|L2	-1753	NM_025151	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
212355	chr7	127590901	127591230	+	0	NA	exon (NM_001662, exon 5 of 6)	exon (NM_001662, exon 5 of 6)	2654	NM_001662	381		NM_001662	ENSG00000004059	ARF5	-	ADP ribosylation factor 5	protein-coding
98032	chr17	45412601	45413350	+	0	NA	intron (NR_169601, intron 4 of 20)	(T)n|Simple_repeat|Simple_repeat	-2589	NM_001385399	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
74333	chr15	58505971	58506330	+	0	NA	intron (NM_000236, intron 1 of 8)	intron (NM_000236, intron 1 of 8)	-7415	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
220333	chr8	98949201	98949650	+	0	NA	exon (NM_001286841, exon 3 of 5)	exon (NM_001286841, exon 3 of 5)	4983	NM_001142462	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
210053	chr7	95434651	95435430	+	0	NA	promoter-TSS (NM_000305)	promoter-TSS (NM_000305)	-12	NM_000305	5445		NM_000305	ENSG00000105854	PON2	-	paraoxonase 2	protein-coding
91328	chr17	4381971	4382130	+	0	NA	Intergenic	Intergenic	-15376	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
82148	chr16	14829651	14829750	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-4014	NM_001004067	408050		NM_001004067	ENSG00000103226	NOMO3	Nomo	NODAL modulator 3	protein-coding
222035	chr8	130202371	130202530	+	0	NA	intron (NM_001362924, intron 5 of 30)	intron (NM_001362924, intron 5 of 30)	94083	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
154373	chr22	33920171	33920330	+	0	NA	5' UTR (NM_004737, exon 1 of 16)	5' UTR (NM_004737, exon 1 of 16)	226	NM_001378628	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
161514	chr3	42589251	42589500	+	0	NA	intron (NM_016305, intron 1 of 3)	intron (NM_016305, intron 1 of 3)	-1485	NM_001370300	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
12259	chr1	100450371	100450530	+	0	NA	intron (NM_001319212, intron 7 of 13)	MamGypsy2-I|LTR|Gypsy	-87689	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
212589	chr7	129024921	129025180	+	0	NA	intron (NR_167927, intron 1 of 23)	HAL1M8|LINE|L1	30061	NM_001382222	23534		NM_012470	ENSG00000064419	TNPO3	IPO12|LGMD1F|LGMDD2|MTR10A|TRN-SR|TRN-SR2|TRNSR	transportin 3	protein-coding
50179	chr12	45993451	45993750	+	0	NA	Intergenic	AluSz|SINE|Alu	-3026	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
92383	chr17	8247801	8248600	+	0	NA	promoter-TSS (NR_046431)	promoter-TSS (NR_046431)	-144	NM_025099	80169		NM_025099	ENSG00000178971	CTC1	AAF-132|AAF132|C17orf68|CRMCC|tmp494178	CST telomere replication complex component 1	protein-coding
175829	chr4	78058751	78059150	+	0	NA	intron (NM_025074, intron 1 of 73)	CpG	1380	NM_001166133	80144		NM_020875	ENSG00000138759	FRAS1	FRASRS1	Fraser extracellular matrix complex subunit 1	protein-coding
214214	chr7	148722571	148723130	+	0	NA	intron (NM_001370664, intron 1 of 21)	intron (NM_001370664, intron 1 of 21)	23140	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
158872	chr3	9860601	9861000	+	0	NA	Intergenic	AluYi6|SINE|Alu	-16741	NM_001351737	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
204490	chr7	4763321	4763580	+	0	NA	3' UTR (NM_001037165, exon 9 of 9)	3' UTR (NM_001037165, exon 9 of 9)	-12173	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
62753	chr13	106917571	106918350	+	0	NA	Intergenic	CpG	264080	NR_047026	100874173		NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
18657	chr1	167043751	167044680	+	0	NA	Intergenic	Intergenic	46162	NM_005814	10223		NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
169999	chr3	179956571	179956730	+	0	NA	intron (NM_001349396, intron 1 of 13)	intron (NM_001349396, intron 1 of 13)	17575	NM_001256755	51555		NM_016559	ENSG00000114757	PEX5L	PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b	peroxisomal biogenesis factor 5 like	protein-coding
111709	chr19	4305471	4306000	+	0	NA	intron (NM_024333, intron 1 of 12)	intron (NM_024333, intron 1 of 12)	1137	NM_024333	79187		NM_024333	ENSG00000105255	FSD1	GLFND|MIR1	fibronectin type III and SPRY domain containing 1	protein-coding
229324	chr9	120894821	120895280	+	0	NA	promoter-TSS (NM_001286840)	promoter-TSS (NM_001286840)	-154	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
206943	chr7	38241701	38242130	+	0	NA	Intergenic	Intergenic	31732	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
84946	chr16	31355901	31356100	+	0	NA	intron (NM_000887, intron 2 of 29)	intron (NM_000887, intron 2 of 29)	824	NM_000887	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
15924	chr1	151760071	151760230	+	0	NA	exon (NM_001300733, exon 6 of 6)	exon (NM_001300733, exon 6 of 6)	-2819	NM_001134939	51686		NM_016178	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
79817	chr16	1418021	1418280	+	0	NA	Intergenic	AluSx|SINE|Alu	2597	NM_001272051	283951		NM_001010878	ENSG00000174109	UQCC4	C16orf91|CCSMST1|URLC5|gs103	ubiquinol-cytochrome c reductase complex assembly factor 4	protein-coding
85979	chr16	57413671	57414030	+	0	NA	intron (NM_002987, intron 1 of 3)	intron (NM_002987, intron 1 of 3)	9083	NM_002987	6361		NM_002987	ENSG00000102970	CCL17	A-152E5.3|ABCD-2|SCYA17|TARC	C-C motif chemokine ligand 17	protein-coding
103532	chr17	78629021	78629280	+	0	NA	intron (NR_110849, intron 2 of 4)	intron (NR_110849, intron 2 of 4)	2907	NR_110848	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
132331	chr2	105413251	105413550	+	0	NA	intron (NM_001374399, intron 1 of 6)	intron (NM_001374399, intron 1 of 6)	-13733	NM_001318894	2274		NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
58130	chr12	124900001	124900200	+	0	NA	Intergenic	AluJo|SINE|Alu	14550	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
81971	chr16	11873751	11874050	+	0	NA	intron (NM_001130007, intron 14 of 14)	intron (NM_001130007, intron 14 of 14)	-22358	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
49516	chr12	25382901	25383800	+	0	NA	Intergenic	AluJo|SINE|Alu	-132421	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
212660	chr7	129537521	129538180	+	0	NA	Intergenic	Intergenic	35319	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
172427	chr4	1861271	1861500	+	0	NA	Intergenic	Intergenic	-5229	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
54694	chr12	93420871	93421580	+	0	NA	intron (NM_003348, intron 1 of 3)	AluYf1|SINE|Alu	20722	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
112166	chr19	5651321	5652650	+	0	NA	intron (NM_001320571, intron 7 of 18)	AluSg|SINE|Alu	28253	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
173189	chr4	6775601	6776200	+	0	NA	Intergenic	L2c|LINE|L2	-6827	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
81302	chr16	4687321	4687830	+	0	NA	3' UTR (NM_001142290, exon 17 of 17)	3' UTR (NM_001142290, exon 17 of 17)	-6118	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
13445	chr1	114466451	114466850	+	0	NA	intron (NM_033020, intron 1 of 18)	MER77|LTR|ERVL	44553	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
204761	chr7	5598221	5600100	+	0	NA	intron (NM_003088, intron 1 of 4)	intron (NM_003088, intron 1 of 4)	6344	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
138260	chr2	203326671	203327080	+	0	NA	Intergenic	AluY|SINE|Alu	-1519	NR_164704	10152		NM_005759	ENSG00000138443	ABI2	ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB	abl interactor 2	protein-coding
5350	chr1	25309201	25309600	+	0	NA	intron (NM_001282871, intron 8 of 8)	MER113|DNA|hAT-Charlie	28854	NM_001321772	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
132004	chr2	100593951	100594350	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-9589	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
160512	chr3	30637351	30638250	+	0	NA	intron (NM_001024847, intron 2 of 7)	L1ME4b|LINE|L1	31199	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
118607	chr19	36771001	36771970	+	0	NA	intron (NM_001193552, intron 1 of 4)	LTR25|LTR|ERV1	1322	NM_001193552	342892		NM_001193552	ENSG00000267041	ZNF850	ZNF850P	zinc finger protein 850	protein-coding
51229	chr12	50763351	50766200	+	0	NA	intron (NM_005171, intron 1 of 6)	CpG	674	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
55221	chr12	101819721	101820180	+	0	NA	intron (NM_024312, intron 1 of 20)	intron (NM_024312, intron 1 of 20)	11009	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
143626	chr20	31769401	31769600	+	0	NA	intron (NM_012112, intron 5 of 17)	AluY|SINE|Alu	30210	NM_012112	22974		NM_012112	ENSG00000088325	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2 microtubule nucleation factor	protein-coding
29649	chr10	71860251	71860750	+	0	NA	Intergenic	Intergenic	-9249	NM_001042466	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
199746	chr6	125793651	125794430	+	0	NA	intron (NM_001199621, intron 1 of 14)	L4_B_Mam|LINE|RTE-X	3080	NM_001199621	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
228980	chr9	113543201	113543400	+	0	NA	intron (NM_001276261, intron 10 of 14)	intron (NM_001276261, intron 10 of 14)	6689	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
102209	chr17	75201451	75202350	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-3536	NM_001330472	79902		NM_024844	ENSG00000125450	NUP85	FROUNT|NPHS17|Nup75	nucleoporin 85	protein-coding
79034	chr16	71101	71500	+	0	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	1331	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
7314	chr1	32623071	32623430	+	0	NA	intron (NM_001366266, intron 4 of 4)	L2a|LINE|L2	27300	NM_001366278	339487		NM_178547	ENSG00000176261	ZBTB8OS	ARCH|ARCH2	zinc finger and BTB domain containing 8 opposite strand	protein-coding
232207	chr9	134338371	134338880	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	12170	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
188439	chr5	154449571	154449930	+	0	NA	intron (NM_001131063, intron 1 of 2)	intron (NM_001131063, intron 1 of 2)	3753	NM_001131062	79685		NM_024632	ENSG00000164576	SAP30L	NS4ATP2	SAP30 like	protein-coding
230086	chr9	127506951	127507450	+	0	NA	exon (NM_001035534, exon 14 of 14)	exon (NM_001035534, exon 14 of 14)	54945	NM_001005374	90678		NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
81748	chr16	11379371	11379880	+	0	NA	intron (NM_001370704, intron 66 of 66)	intron (NM_001370704, intron 66 of 66)	34166	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
129043	chr2	65054701	65054900	+	0	NA	Intergenic	MIR3|SINE|MIR	-1616	NM_001319101	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
80046	chr16	1963361	1964000	+	0	NA	promoter-TSS (NR_002326)	promoter-TSS (NR_002326)	-574	NR_002326	26784		NR_002326	ENSG00000207405	SNORA64	RNU64|U64	small nucleolar RNA, H/ACA box 64	snoRNA
114017	chr19	10878071	10878630	+	0	NA	intron (NM_001370089, intron 1 of 14)	intron (NM_001370089, intron 1 of 14)	5921	NM_001370089	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
154097	chr22	30970451	30970550	+	0	NA	non-coding (NR_002323, exon 1 of 3)	non-coding (NR_002323, exon 1 of 3)	1289	NR_152868	55000		NM_017903	ENSG00000253352	TUG1	LINC00080|NCRNA00080|TI-227H	taurine up-regulated 1	protein-coding
118957	chr19	38841521	38843380	+	0	NA	intron (NM_001533, intron 6 of 12)	intron (NM_001533, intron 6 of 12)	7536	NM_001533	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
106193	chr18	10959821	10959900	+	0	NA	intron (NM_001378183, intron 3 of 55)	intron (NM_001378183, intron 3 of 55)	189709	NM_001378183	63895		NM_022068	ENSG00000154864	PIEZO2	C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS	piezo type mechanosensitive ion channel component 2	protein-coding
207104	chr7	40599051	40599150	+	0	NA	intron (NM_001193312, intron 11 of 12)	intron (NM_001193312, intron 11 of 12)	380839	NR_110831	101928744		NR_110831	ENSG00000232458	LINC01450	-	long intergenic non-protein coding RNA 1450	ncRNA
65134	chr14	44981371	44981530	+	0	NA	intron (NR_131765, intron 1 of 19)	intron (NR_131765, intron 1 of 19)	19260	NM_001308120	23116		NM_015091	ENSG00000198718	TOGARAM1	FAM179B|JBTS37|KIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding
121078	chr19	45884251	45884500	+	0	NA	exon (NM_015649, exon 1 of 1)	exon (NM_015649, exon 1 of 1)	1766	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
234503	chrX	19343351	19345030	+	0	NA	intron (NM_001173456, intron 1 of 9)	CpG	263	NM_001173454	5160		NM_000284	ENSG00000131828	PDHA1	E1alpha|PDHA|PDHAD|PDHCE1A|PHE1A	pyruvate dehydrogenase E1 subunit alpha 1	protein-coding
221910	chr8	128825521	128826180	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	140151	NR_145483	106144608		NR_145483	ENSG00000229140	LINC00976	-	long intergenic non-protein coding RNA 976	ncRNA
34863	chr11	349321	350030	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-19824	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
33613	chr10	119584801	119585630	+	0	NA	intron (NM_001033925, intron 2 of 11)	AluJb|SINE|Alu	11814	NM_001323965	7073		NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
66266	chr14	61366471	61366700	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	45142	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
226677	chr9	75084351	75084650	+	0	NA	intron (NM_001127603, intron 1 of 7)	intron (NM_001127603, intron 1 of 7)	3655	NM_001127603	54981		NM_017881	ENSG00000106733	NMRK1	C9orf95|NRK1|bA235O14.2	nicotinamide riboside kinase 1	protein-coding
231360	chr9	130627971	130628250	+	0	NA	intron (NM_003934, intron 12 of 18)	(CA)n|Simple_repeat|Simple_repeat	1813	NR_106915	102465515		NR_106915	ENSG00000277713	MIR6856	hsa-mir-6856	microRNA 6856	ncRNA
111631	chr19	4139571	4140780	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13456	NM_001271997	84699		NM_032607	ENSG00000060566	CREB3L3	CREB-H|CREBH|HYST1481|HYTG2	cAMP responsive element binding protein 3 like 3	protein-coding
150893	chr21	44143011	44144500	+	0	NA	intron (NR_135220, intron 5 of 5).2	intron (NR_135220, intron 5 of 5).2	10072	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
223619	chr8	144320051	144320550	+	0	NA	intron (NM_012079, intron 2 of 16)	intron (NM_012079, intron 2 of 16)	-2985	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
110813	chr19	2474301	2477500	+	0	NA	promoter-TSS (NM_015675)	promoter-TSS (NM_015675)	-227	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
67463	chr14	70871901	70872830	+	0	NA	Intergenic	Intergenic	-35094	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
15368	chr1	150107671	150108030	+	0	NA	intron (NR_103998, intron 12 of 13)	AluSx|SINE|Alu	40074	NR_103998	11311		NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
9230	chr1	45748301	45748500	+	0	NA	intron (NM_001145349, intron 1 of 9)	AluJb|SINE|Alu	2253	NM_005897	3652		NM_005897	ENSG00000197429	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
196276	chr6	42974471	42974930	+	0	NA	intron (NM_000287, intron 2 of 16)	AluY|SINE|Alu	4481	NM_001316313	5190		NM_000287	ENSG00000124587	PEX6	HMLR2|PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
212948	chr7	130943351	130944080	+	0	NA	TTS (NR_109851)	TTS (NR_109851)	30251	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
207472	chr7	44621621	44621900	+	0	NA	intron (NM_001363523, intron 1 of 23)	AluSg|SINE|Alu	15133	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
106342	chr18	13105101	13105300	+	0	NA	intron (NM_032142, intron 40 of 44)	Charlie10b|DNA|hAT-Charlie	-112482	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
42650	chr11	72435571	72435730	+	0	NA	promoter-TSS (NM_001258394)	promoter-TSS (NM_001258394)	-966	NM_001258394	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
114384	chr19	12550851	12552330	+	0	NA	promoter-TSS (NM_144976)	promoter-TSS (NM_144976)	-108	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
21284	chr1	204446051	204446950	+	0	NA	intron (NM_001377335, intron 17 of 35)	intron (NM_001377335, intron 17 of 35)	-34683	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
16492	chr1	154765971	154766250	+	0	NA	intron (NM_001204087, intron 3 of 8)	intron (NM_001204087, intron 3 of 8)	93766	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
164828	chr3	71008501	71009330	+	0	NA	intron (NM_001244810, intron 12 of 20)	intron (NM_001244810, intron 12 of 20)	56009	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
100205	chr17	59151821	59152130	+	0	NA	promoter-TSS (NR_029842)	promoter-TSS (NR_029842)	-754	NR_029842	407027		NR_029842	ENSG00000207996	MIR301A	MIR301|MIRN301|MIRN301A|mir-301a	microRNA 301a	ncRNA
36124	chr11	3102001	3102400	+	0	NA	exon (NM_001144063, exon 11 of 21)	exon (NM_001144063, exon 11 of 21)	-44777	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
142433	chr20	3924371	3925300	+	0	NA	non-coding (NR_136715, exon 7 of 7)	non-coding (NR_136715, exon 7 of 7)	-7272	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
121934	chr19	48455221	48455680	+	0	NA	promoter-TSS (NM_013348)	promoter-TSS (NM_013348)	-124	NM_013348	3770		NM_013348	ENSG00000182324	KCNJ14	IRK4|KIR2.4	potassium inwardly rectifying channel subfamily J member 14	protein-coding
139672	chr2	226971101	226971300	+	0	NA	intron (NM_001349069, intron 8 of 8)	intron (NM_001349069, intron 8 of 8)	135146	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
237864	chrX	130192051	130192630	+	0	NA	Intergenic	Intergenic	20378	NM_004794	9363		NM_004794	ENSG00000134594	RAB33A	RabS10	RAB33A, member RAS oncogene family	protein-coding
17048	chr1	156087001	156087630	+	0	NA	intron (NM_001282625, intron 2 of 12)	AluSg7|SINE|Alu	4742	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
53583	chr12	67698701	67699530	+	0	NA	Intergenic	Intergenic	30360	NR_110063	101927901		NR_110063	ENSG00000255970	LINC02421	-	long intergenic non-protein coding RNA 2421	ncRNA
32037	chr10	101031901	101033630	+	0	NA	intron (NM_030971, intron 2 of 11)	(TGTG)n|Simple_repeat|Simple_repeat	1526	NM_030971	81855		NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3|SLC56A3	sideroflexin 3	protein-coding
56807	chr12	120212851	120213300	+	0	NA	TTS (NR_038924)	TTS (NR_038924)	11784	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
95628	chr17	37696471	37696630	+	0	NA	intron (NM_001304286, intron 6 of 6).2	MSTB|LTR|ERVL-MaLR	48509	NM_001304286	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
129349	chr2	68761521	68761850	+	0	NA	intron (NM_001364821, intron 1 of 10)	L1MB3|LINE|L1	-13225	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
159085	chr3	12288471	12288630	+	0	NA	promoter-TSS (NM_138711)	promoter-TSS (NM_138711)	-510	NM_001354667	5468		NM_005037	ENSG00000132170	PPARG	CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARG5|PPARgamma	peroxisome proliferator activated receptor gamma	protein-coding
170728	chr3	188156101	188156530	+	0	NA	intron (NM_001375462, intron 1 of 11)	intron (NM_001375462, intron 1 of 11)	2158	NM_001375463	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
210585	chr7	100369001	100369800	+	0	NA	Intergenic	Intergenic	-4087	NM_178273	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
169124	chr3	155856521	155857000	+	0	NA	Intergenic	L1MC4a|LINE|L1	-2301	NM_001190992	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
207565	chr7	44891201	44892000	+	0	NA	Intergenic	Intergenic	-6070	NM_033224	5814		NM_033224	ENSG00000146676	PURB	PURBETA	purine rich element binding protein B	protein-coding
32814	chr10	109921871	109922200	+	0	NA	intron (NM_020383, intron 1 of 20)	MLT1K|LTR|ERVL-MaLR	1211	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
113750	chr19	10499451	10499900	+	0	NA	exon (NM_203500, exon 2 of 6)	exon (NM_203500, exon 2 of 6)	3096	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
88959	chr16	87851351	87852030	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-2206	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
4435	chr1	21292551	21294000	+	0	NA	promoter-TSS (NR_038404)	promoter-TSS (NR_038404)	-15	NR_038404	100506801		NR_038404	ENSG00000231105	ECE1-AS1	-	ECE1 antisense RNA 1	ncRNA
215406	chr7	157574121	157574400	+	0	NA	TTS (NR_029689)	TTS (NR_029689)	162	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
114230	chr19	11481671	11483230	+	0	NA	TTS (NM_138783)	TTS (NM_138783)	-1404	NM_001420	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
94600	chr17	29736701	29737030	+	0	NA	intron (NM_033389, intron 2 of 14)	AluY|SINE|Alu	24567	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
46146	chr11	123049601	123050500	+	0	NA	Intergenic	AluSc|SINE|Alu	8106	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
149205	chr21	25283801	25284030	+	0	NA	Intergenic	L1M8|LINE|L1	147786	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
112198	chr19	5677071	5677730	+	0	NA	Intergenic	Intergenic	2838	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
152118	chr22	19939871	19940230	+	0	NA	intron (NR_147957, intron 1 of 16)	AluY|SINE|Alu	-1722	NM_001362828	1312		NM_000754	ENSG00000093010	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
73322	chr15	41933021	41933280	+	0	NA	intron (NM_139265, intron 3 of 5)	intron (NM_139265, intron 3 of 5)	11733	NR_120332	101928363		NR_120332	ENSG00000259883	EHD4-AS1	-	EHD4 antisense RNA 1	ncRNA
4762	chr1	23525901	23526250	+	0	NA	intron (NM_004091, intron 1 of 6)	intron (NM_004091, intron 1 of 6)	4145	NR_110799	101928163		NR_110799		LOC101928163	-	uncharacterized LOC101928163	ncRNA
93411	chr17	18380201	18380600	+	0	NA	intron (NM_001145127, intron 1 of 10).2	intron (NM_001145127, intron 1 of 10).2	2622	NM_001145127	645027		NM_001145127	ENSG00000214860	EVPLL	-	envoplakin like	protein-coding
223787	chr8	144684071	144684800	+	0	NA	intron (NM_001308208, intron 1 of 10)	CpG	1411	NM_001308208	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
180191	chr5	1488851	1489980	+	0	NA	intron (NM_024830, intron 4 of 13)	intron (NM_024830, intron 4 of 13)	21441	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
15677	chr1	150953871	150954030	+	0	NA	intron (NM_012432, intron 14 of 21)	AluY|SINE|Alu	20885	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
77102	chr15	78926671	78927380	+	0	NA	intron (NM_001319137, intron 10 of 12)	intron (NM_001319137, intron 10 of 12)	18021	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
76045	chr15	72237171	72237900	+	0	NA	Intergenic	Intergenic	-5911	NM_001206798	5315		NM_002654	ENSG00000067225	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1|p58	pyruvate kinase M1/2	protein-coding
186507	chr5	138343471	138343780	+	0	NA	intron (NM_001350194, intron 3 of 4)	L1ME4b|LINE|L1	-5270	NM_001364026	995		NM_001790	ENSG00000158402	CDC25C	CDC25|PPP1R60	cell division cycle 25C	protein-coding
155217	chr22	37887771	37888280	+	0	NA	intron (NM_001242923, intron 10 of 10)	intron (NM_001242923, intron 10 of 10)	-18272	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
115297	chr19	14580701	14580900	+	0	NA	Intergenic	MIRc|SINE|MIR	-2284	NM_207390	388512		NM_207390	ENSG00000187912	CLEC17A	-	C-type lectin domain containing 17A	protein-coding
177906	chr4	129094651	129094950	+	0	NA	intron (NM_173487, intron 1 of 5)	intron (NM_173487, intron 1 of 5)	1088	NM_173487	132321		NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
134335	chr2	136112251	136112690	+	0	NA	Intergenic	Intergenic	3765	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
169670	chr3	171646451	171646830	+	0	NA	intron (NM_001130081, intron 20 of 25)	intron (NM_001130081, intron 20 of 25)	163843	NM_001130081	5337		NM_002662	ENSG00000075651	PLD1	CVDD|CVDP1	phospholipase D1	protein-coding
207	chr1	777151	777530	+	0	NA	intron (NR_168328, intron 1 of 19)	intron (NR_168328, intron 1 of 19)	1294	NR_168328	100288069		NR_168328		LOC100288069	-	uncharacterized LOC100288069	ncRNA
93150	chr17	17751501	17753750	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	13677	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
184199	chr5	95862901	95863100	+	0	NA	Intergenic	Intergenic	10768	NR_026936	202299		NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
25442	chr10	6587401	6587750	+	0	NA	Intergenic	Intergenic	-6929	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
231736	chr9	131999821	132000330	+	0	NA	intron (NM_001253881, intron 3 of 6)	intron (NM_001253881, intron 3 of 6)	79792	NM_001253882	9442		NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|NEDSCAC|TRAP37	mediator complex subunit 27	protein-coding
1665	chr1	3897921	3898400	+	0	NA	intron (NM_207356, intron 1 of 3)	L1M4b|LINE|L1	2112	NM_207356	339448		NM_207356	ENSG00000198912	C1orf174	-	chromosome 1 open reading frame 174	protein-coding
202765	chr6	159053451	159054600	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-8873	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
39074	chr11	47986721	47986980	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	6291	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
193664	chr6	30921411	30921630	+	0	NA	intron (NM_001167734, intron 17 of 29).3	intron (NM_001167734, intron 17 of 29).3	7189	NM_001167734	57176		NM_020442	ENSG00000137411	VARS2	COXPD20|VALRS|VARS2L|VARSL	valyl-tRNA synthetase 2, mitochondrial	protein-coding
90592	chr17	1577221	1577850	+	0	NA	intron (NM_152346, intron 12 of 13).2	intron (NM_152346, intron 12 of 13).2	-14743	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
148522	chr20	64096771	64097030	+	0	NA	intron (NM_001318855, intron 1 of 2)	intron (NM_001318855, intron 1 of 2)	4212	NM_001318854	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
199779	chr6	125973951	125974480	+	0	NA	intron (NM_138571, intron 3 of 4)	intron (NM_138571, intron 3 of 4)	-12215	NM_001350583	60487		NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
177656	chr4	121256301	121257300	+	0	NA	Intergenic	Intergenic	-29317	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
83681	chr16	28403831	28404800	+	0	NA	promoter-TSS (NM_001099661)	promoter-TSS (NM_001099661)	-427	NM_001267574	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
196027	chr6	42032551	42032650	+	0	NA	intron (NM_001287434, intron 1 of 4)	intron (NM_001287434, intron 1 of 4)	16294	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
184042	chr5	91376101	91376600	+	0	NA	intron (NM_001329671, intron 2 of 6)	intron (NM_001329671, intron 2 of 6)	3747	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
200835	chr6	138012871	138013030	+	0	NA	Intergenic	Intergenic	-67150	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
58883	chr13	18599921	18600580	+	0	NA	Intergenic	Intergenic	139849	NR_047508	100874164		NR_047508		LINC00417	-	long intergenic non-protein coding RNA 417	ncRNA
192302	chr6	21439051	21439150	+	0	NA	Intergenic	Intergenic	72792	NR_103790	100874531		NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
208130	chr7	60383151	60383250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2920856	NR_003952	643955		NR_003952	ENSG00000290558	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
57054	chr12	120885821	120886980	+	0	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	17958	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
69768	chr14	99168101	99168550	+	0	NA	TTS (NM_138576)	TTS (NM_138576)	103872	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
23227	chr1	227740751	227741250	+	0	NA	intron (NM_001323931, intron 2 of 5)	intron (NM_001323931, intron 2 of 5)	5305	NM_001323934	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
166574	chr3	116360451	116360550	+	0	NA	intron (NR_109998, intron 1 of 3)	L1HS|LINE|L1	476	NR_109998	101926903		NR_109998	ENSG00000240922	LSAMP-AS1	-	LSAMP antisense RNA 1	ncRNA
108636	chr18	76466921	76467730	+	0	NA	intron (NM_014643, intron 1 of 6)	intron (NM_014643, intron 1 of 6)	-24327	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
123066	chr19	51367001	51368400	+	0	NA	intron (NM_152353, intron 2 of 3)	CpG-15033	1303	NM_152353	125875		NM_152353	ENSG00000160318	CLDND2	-	claudin domain containing 2	protein-coding
132468	chr2	105879501	105879900	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	27853	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
82212	chr16	15012571	15013230	+	0	NA	intron (NM_001324019, intron 8 of 22)	AluYm1|SINE|Alu	-2503	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
11867	chr1	93076621	93077500	+	0	NA	Intergenic	Intergenic	-2175	NM_001164393	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
27209	chr10	28594001	28594740	+	0	NA	intron (NM_100486, intron 6 of 12)	intron (NM_100486, intron 6 of 12)	61252	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
225225	chr9	34186001	34186750	+	0	NA	intron (NM_001171201, intron 1 of 5)	intron (NM_001171201, intron 1 of 5)	7332	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
133151	chr2	112690721	112691400	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-30426	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
230534	chr9	128368971	128369330	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluJb|SINE|Alu	-2169	NM_001135947	81605		NM_030914	ENSG00000167118	URM1	C9orf74	ubiquitin related modifier 1	protein-coding
94479	chr17	29274071	29274600	+	0	NA	intron (NM_020772, intron 2 of 3)	AluJo|SINE|Alu	19813	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
211265	chr7	102685871	102686030	+	0	NA	intron (NR_146066, intron 9 of 11)	AluSg|SINE|Alu	-14215	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
95446	chr17	36141571	36141930	+	0	NA	Intergenic	Intergenic	34828	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
163583	chr3	51960021	51960280	+	0	NA	intron (NM_033010, intron 6 of 12)	intron (NM_033010, intron 6 of 12)	2742	NM_033010	57060		NM_020418	ENSG00000090097	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding
20596	chr1	198761721	198762500	+	0	NA	Intergenic	L1PA13|LINE|L1	96872	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
205868	chr7	24982871	24983480	+	0	NA	Intergenic	Intergenic	-2997	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
215094	chr7	155202151	155202250	+	0	NA	Intergenic	Intergenic	-95572	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
57542	chr12	122161701	122162330	+	0	NA	Intergenic	L1ME4a|LINE|L1	-5704	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
69539	chr14	96501671	96503350	+	0	NA	promoter-TSS (NR_122121)	promoter-TSS (NR_122121)	128	NM_001363664	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
90261	chr17	952151	952650	+	0	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	27376	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
40737	chr11	64826851	64827150	+	0	NA	intron (NM_017525, intron 34 of 36)	intron (NM_017525, intron 34 of 36)	-15706	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
214800	chr7	151172521	151173350	+	0	NA	Intergenic	CpG	-5387	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
193763	chr6	31347121	31348100	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	7706	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
58721	chr12	132582501	132582850	+	0	NA	TTS (NR_106821)	TTS (NR_106821)	678	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
30362	chr10	77875051	77875350	+	0	NA	intron (NM_004747, intron 1 of 31).2	MIR|SINE|MIR	51555	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
97517	chr17	43971451	43971750	+	0	NA	intron (NM_004160, intron 1 of 6)	L1ME1|LINE|L1	-29124	NM_002722	5539		NM_002722	ENSG00000108849	PPY	PH|PNP|PP	pancreatic polypeptide	protein-coding
14005	chr1	120702821	120703280	+	0	NA	Intergenic	L2c|LINE|L2	-20889	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
130510	chr2	85599501	85600150	+	0	NA	intron (NM_153342, intron 5 of 6)	intron (NM_153342, intron 5 of 6)	2569	NM_001369917	129303		NM_153342	ENSG00000168890	TMEM150A	TM6P1|TMEM150|TTN1	transmembrane protein 150A	protein-coding
123098	chr19	51514851	51515100	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-13175	NM_053003	89858		NM_033329	ENSG00000254521	SIGLEC12	S2V|SIGLECL1|SLG|Siglec-XII	sialic acid binding Ig like lectin 12	protein-coding
132496	chr2	106026401	106026600	+	0	NA	Intergenic	Intergenic	-39188	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
50668	chr12	48826351	48827030	+	0	NA	intron (NM_001206915, intron 9 of 11)	intron (NM_001206915, intron 9 of 11)	8194	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
168262	chr3	141436221	141436680	+	0	NA	intron (NM_001376174, intron 4 of 4)	MER102b|DNA|hAT-Charlie	33436	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
145031	chr20	38077501	38077700	+	0	NA	intron (NM_021215, intron 6 of 6)	intron (NM_021215, intron 6 of 6)	43854	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
145304	chr20	41050501	41051300	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	22078	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
231113	chr9	129823301	129825030	+	0	NA	promoter-TSS (NM_000113)	promoter-TSS (NM_000113)	-29	NM_000113	1861		NM_000113	ENSG00000136827	TOR1A	AMC5|DQ2|DYT1	torsin family 1 member A	protein-coding
219419	chr8	71775071	71775230	+	0	NA	Intergenic	Intergenic	-67973	NR_033652	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
108114	chr18	62200401	62200800	+	0	NA	intron (NR_144408, intron 1 of 32)	intron (NR_144408, intron 1 of 32)	13345	NR_144403	57614		NM_020854	ENSG00000134444	RELCH	HsT3308|HsT885|KIAA1468	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	protein-coding
18912	chr1	168393151	168393330	+	0	NA	Intergenic	Intergenic	17716	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
22660	chr1	223772201	223772400	+	0	NA	intron (NM_001748, intron 20 of 20)	intron (NM_001748, intron 20 of 20)	59761	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
5423	chr1	25553721	25554150	+	0	NA	exon (NM_015627, exon 2 of 9)	exon (NM_015627, exon 2 of 9)	10329	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
217617	chr8	30014301	30014500	+	0	NA	Intergenic	L2a|LINE|L2	-57052	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
205896	chr7	25120271	25120630	+	0	NA	3' UTR (NM_018947, exon 3 of 3)	3' UTR (NM_018947, exon 3 of 3)	4810	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
73092	chr15	40940401	40941100	+	0	NA	Intergenic	Intergenic	11410	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
124556	chr2	442771	443130	+	0	NA	Intergenic	Intergenic	49705	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
155030	chr22	37472171	37472800	+	0	NA	exon (NM_002405, exon 7 of 8)	exon (NM_002405, exon 7 of 8)	13899	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
235108	chrX	40580321	40581850	+	0	NA	exon (NM_005765, exon 1 of 9)	exon (NM_005765, exon 1 of 9)	115	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
161963	chr3	46278751	46279350	+	0	NA	Intergenic	MLT1H-int|LTR|ERVL-MaLR	36590	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
101184	chr17	65198521	65199180	+	0	NA	intron (NM_001165933, intron 13 of 16)	intron (NM_001165933, intron 13 of 16)	61480	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
238183	chrX	136878421	136878700	+	0	NA	TTS (NR_002735)	TTS (NR_002735)	711	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
226858	chr9	78030501	78031200	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	961	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
5880	chr1	26781401	26781950	+	0	NA	3' UTR (NM_006015, exon 20 of 20)	3' UTR (NM_006015, exon 20 of 20)	-5379	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
185260	chr5	123548351	123548650	+	0	NA	intron (NM_001364150, intron 2 of 11)	intron (NM_001364150, intron 2 of 11)	3083	NM_001044723	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
22695	chr1	223912551	223912880	+	0	NA	Intergenic	Intergenic	-66743	NM_005426	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
129376	chr2	68796171	68797030	+	0	NA	intron (NM_001364819, intron 4 of 10)	L1PB4|LINE|L1	21690	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
165721	chr3	103048301	103048530	+	0	NA	Intergenic	Intergenic	475701	NR_039611	100616336		NR_039611	ENSG00000265328	MIR548AB	-	microRNA 548ab	ncRNA
2436	chr1	9612201	9612600	+	0	NA	intron (NM_001130924, intron 10 of 10)	intron (NM_001130924, intron 10 of 10)	23489	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
10905	chr1	83343701	83343900	+	0	NA	Intergenic	Intergenic	-102254	NR_146478	101927542		NR_146478		LINC01712	-	long intergenic non-protein coding RNA 1712	ncRNA
184924	chr5	112928251	112928550	+	0	NA	Intergenic	Intergenic	-6173	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
44293	chr11	102319651	102319950	+	0	NA	intron (NM_182962, intron 1 of 9)	intron (NM_182962, intron 1 of 9)	2316	NM_001165	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
62273	chr13	98578871	98579500	+	0	NA	TTS (NR_046542)	TTS (NR_046542)	1930	NR_046542	100874069		NR_046542		STK24-AS1	-	STK24 antisense RNA 1	ncRNA
72077	chr15	28902321	28902580	+	0	NA	intron (NM_001379685, intron 2 of 15)	L1MC3|LINE|L1	16476	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
103905	chr17	79810001	79810680	+	0	NA	Intergenic	CpG	-13112	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
187118	chr5	140411821	140412630	+	0	NA	intron (NM_020690, intron 1 of 35)	AluSg|SINE|Alu	10392	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
65515	chr14	51901071	51902030	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	17021	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
113882	chr19	10672001	10672730	+	0	NA	intron (NM_153464, intron 4 of 17)	AluSz|SINE|Alu	18019	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
205437	chr7	16963051	16963350	+	0	NA	Intergenic	Intergenic	-81217	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
135439	chr2	161173851	161173950	+	0	NA	intron (NM_001199135, intron 1 of 7)	intron (NM_001199135, intron 1 of 7)	13472	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
200769	chr6	137846901	137847250	+	0	NA	intron (NR_049793, intron 3 of 3)	L2b|LINE|L2	-20184	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
12779	chr1	109669171	109670450	+	0	NA	intron (NM_000848, intron 5 of 7)	LTR12_|LTR|ERV1	1753	NM_000848	2946		NM_000848	ENSG00000213366	GSTM2	GST4|GSTM|GSTM2-2|GTHMUS	glutathione S-transferase mu 2	protein-coding
130767	chr2	86828751	86829880	+	0	NA	intron (NM_172101, intron 5 of 6)	AluSc8|SINE|Alu	-20919	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
66480	chr14	61598771	61599230	+	0	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-28347	NR_110416	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
82724	chr16	21083751	21084100	+	0	NA	intron (NM_017539, intron 19 of 61)	intron (NM_017539, intron 19 of 61)	66921	NM_001347886	55567		NM_017539	ENSG00000158486	DNAH3	DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3	dynein axonemal heavy chain 3	protein-coding
217789	chr8	33514201	33515330	+	0	NA	Intergenic	CpG	1290	NR_003041	692084		NR_003041	ENSG00000239039	SNORD13	RNU13|SNORD13A|U13	small nucleolar RNA, C/D box 13	snoRNA
121162	chr19	46395171	46396180	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	17889	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
156707	chr22	41699101	41700130	+	0	NA	exon (NM_152513, exon 1 of 31)	exon (NM_152513, exon 1 of 31)	112	NM_152513	150365		NM_152513	ENSG00000167077	MEI1	HYDM3|SPATA38	meiotic double-stranded break formation protein 1	protein-coding
62086	chr13	94550971	94551130	+	0	NA	Intergenic	Intergenic	-1644	NM_001322184	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
118365	chr19	35704101	35704680	+	0	NA	promoter-TSS (NM_001316902)	promoter-TSS (NM_001316902)	-168	NM_001316902	27033		NM_014383	ENSG00000011590	ZBTB32	FAXF|FAZF|Rog|TZFP|ZNF538|mynn	zinc finger and BTB domain containing 32	protein-coding
115122	chr19	14364651	14365130	+	0	NA	promoter-TSS (NR_134908)	promoter-TSS (NR_134908)	-900	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
9121	chr1	45343251	45343780	+	0	NA	TTS (NM_001320800)	TTS (NM_001320800)	-3045	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
103655	chr17	78771271	78772100	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSc5|SINE|Alu	10523	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
132837	chr2	110679471	110679630	+	0	NA	Intergenic	LTR2C|LTR|ERV1	-1443	NM_001278617	699		NM_004336	ENSG00000169679	BUB1	BUB1A|BUB1L|MCPH30|hBUB1	BUB1 mitotic checkpoint serine/threonine kinase	protein-coding
202839	chr6	159737771	159738130	+	0	NA	intron (NM_001270531, intron 2 of 7)	L1MD2|LINE|L1	10444	NM_001270533	9589		NM_004906	ENSG00000146457	WTAP	Mum2	WT1 associated protein	protein-coding
196249	chr6	42899871	42900030	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-9129	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
50377	chr12	47222821	47223830	+	0	NA	intron (NM_138371, intron 3 of 3)	L2|LINE|L2	-6882	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
239090	chrY	10465921	10466280	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	555302	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
186886	chr5	139559071	139559830	+	0	NA	Intergenic	Intergenic	-1716	NM_181838	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
67070	chr14	67883771	67884000	+	0	NA	intron (NM_133509, intron 5 of 10)	intron (NM_133509, intron 5 of 10)	60293	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
120446	chr19	44497971	44498530	+	0	NA	intron (NM_001278509, intron 1 of 4)	intron (NM_001278509, intron 1 of 4)	2272	NM_001278508	7733		NM_013256	ENSG00000167384	ZNF180	HHZ168	zinc finger protein 180	protein-coding
75853	chr15	69575951	69576350	+	0	NA	Intergenic	Intergenic	14430	NR_026979	145837		NR_026979	ENSG00000245750	DRAIC	-	downregulated RNA in cancer, inhibitor of cell invasion and migration	ncRNA
181718	chr5	50674301	50675180	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	7326	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
239483	chrY	56743721	56744180	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-210305	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
60376	chr13	40937571	40938280	+	0	NA	intron (NM_001370329, intron 9 of 9)	AluSx1|SINE|Alu	-16151	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
211189	chr7	102601571	102602400	+	0	NA	intron (NM_001079877, intron 6 of 19)	intron (NM_001079877, intron 6 of 19)	14771	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
12119	chr1	100048551	100048980	+	0	NA	intron (NM_033055, intron 1 of 11)	L2c|LINE|L2	10670	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
105393	chr17	82736671	82736900	+	0	NA	intron (NM_022158, intron 1 of 5)	intron (NM_022158, intron 1 of 5)	1170	NM_022158	64122		NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
33533	chr10	119264701	119265230	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	57394	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
52087	chr12	54078101	54078500	+	0	NA	TTS (NR_026658)	TTS (NR_026658)	3523	NR_026658	100240735		NR_026658	ENSG00000291180	LOC100240735	-	uncharacterized LOC100240735	ncRNA
237614	chrX	123988671	123989030	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	27144	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
149211	chr21	25402501	25402700	+	0	NA	intron (NR_024027, intron 4 of 4)	THE1A-int|LTR|ERVL-MaLR	29101	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
159210	chr3	12893271	12893830	+	0	NA	Intergenic	Intergenic	-8339	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
111566	chr19	4056251	4056350	+	0	NA	intron (NM_015898, intron 1 of 2)	intron (NM_015898, intron 1 of 2)	9229	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
119290	chr19	39794921	39795180	+	0	NA	Intergenic	Intergenic	16196	NM_001382345	342900		NM_001143832	ENSG00000213921	LEUTX	-	leucine twenty homeobox	protein-coding
36752	chr11	9318971	9319630	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-4707	NM_001165030	440026		NM_015012	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
185703	chr5	132008951	132009630	+	0	NA	intron (NM_001205250, intron 1 of 20)	intron (NM_001205250, intron 1 of 20)	2368	NM_001205247	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
218119	chr8	41526701	41527850	+	0	NA	Intergenic	AluJb|SINE|Alu	-1986	NM_032336	84296		NM_032336	ENSG00000147536	GINS4	SLD5	GINS complex subunit 4	protein-coding
109414	chr19	686701	687100	+	0	NA	intron (NM_214710, intron 4 of 4)	intron (NM_214710, intron 4 of 4)	8552	NM_001308209	400668		NM_214710	ENSG00000185198	PRSS57	NSP4|PRSSL1|UNQ782	serine protease 57	protein-coding
18842	chr1	167708951	167709500	+	0	NA	TTS (NM_052862)	TTS (NM_052862)	-12757	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
2833	chr1	11059001	11060700	+	0	NA	exon (NM_003132, exon 1 of 8)	exon (NM_003132, exon 1 of 8)	168	NM_003132	6723		NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
177802	chr4	123412171	123412330	+	0	NA	Intergenic	Intergenic	12710	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
188788	chr5	157828921	157829480	+	0	NA	intron (NM_001195556, intron 1 of 11)	intron (NM_001195556, intron 1 of 11)	29945	NM_014666	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
170965	chr3	194485811	194488480	+	0	NA	promoter-TSS (NM_001374836)	promoter-TSS (NM_001374836)	5	NR_033929	401106		NR_033929		ATP13A3-DT	LINC00884	ATP13A3 divergent transcript	ncRNA
125526	chr2	12858201	12858600	+	0	NA	Intergenic	L2a|LINE|L2	121033	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
70387	chr14	101945771	101946400	+	0	NA	Intergenic	Intergenic	-18488	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
66281	chr14	61378951	61379130	+	0	NA	intron (NM_006255, intron 1 of 13)	L2|LINE|L2	57597	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
191259	chr6	6002051	6002750	+	0	NA	exon (NM_001278711, exon 3 of 4)	exon (NM_001278711, exon 3 of 4)	1644	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
127762	chr2	44016301	44016600	+	0	NA	Intergenic	Intergenic	-20461	NM_133259	10128		NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC|MC4DN5	leucine rich pentatricopeptide repeat containing	protein-coding
110663	chr19	2252321	2252550	+	0	NA	TTS (NM_000479)	TTS (NM_000479)	1796	NR_036207	100423031		NR_036207	ENSG00000284272	MIR4321	-	microRNA 4321	ncRNA
223869	chr9	178371	179750	+	0	NA	promoter-TSS (NM_001145355)	promoter-TSS (NM_001145355)	-4	NM_018491	55871		NM_018491	ENSG00000172785	ZNG1A	CBWD1|COBP	Zn regulated GTPase metalloprotein activator 1A	protein-coding
91594	chr17	5248801	5249000	+	0	NA	Intergenic	Intergenic	-14040	NM_001271842	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
88453	chr16	84970371	84970930	+	0	NA	Intergenic	Intergenic	40885	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
165677	chr3	101867221	101867730	+	0	NA	Intergenic	Intergenic	17961	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
107683	chr18	49413521	49413880	+	0	NA	intron (NM_001374431, intron 2 of 16)	L1MB4|LINE|L1	46945	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
49636	chr12	28234251	28234550	+	0	NA	intron (NM_001352086, intron 3 of 15)	intron (NM_001352086, intron 3 of 15)	-43662	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
163231	chr3	50262501	50263250	+	0	NA	Intergenic	Intergenic	4496	NR_110702	101928931		NR_110702		SEMA3B-AS1	-	SEMA3B antisense RNA 1 (head to head)	ncRNA
237713	chrX	124726421	124726680	+	0	NA	intron (NM_001163279, intron 4 of 31)	intron (NM_001163279, intron 4 of 31)	237267	NM_001163279	10178		NM_014253	ENSG00000009694	TENM1	ODZ1|ODZ3|TEN-M1|TEN1|TNM|TNM1|ten-1	teneurin transmembrane protein 1	protein-coding
65412	chr14	50825201	50825600	+	0	NA	intron (NM_020921, intron 2 of 30)	intron (NM_020921, intron 2 of 30)	3603	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
112834	chr19	7529271	7530050	+	0	NA	exon (NM_020533, exon 11 of 14)	exon (NM_020533, exon 11 of 14)	-4504	NM_006702	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
158949	chr3	10185521	10186630	+	0	NA	intron (NM_001570, intron 2 of 12)	AluSx1|SINE|Alu	21156	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
100211	chr17	59159471	59159630	+	0	NA	intron (NM_018304, intron 1 of 9)	L2c|LINE|L2	3804	NM_018304	55771		NM_018304	ENSG00000068489	PRR11	-	proline rich 11	protein-coding
185954	chr5	133028151	133028450	+	0	NA	Intergenic	L1ME3G|LINE|L1	-1751	NM_001300819	54819		NM_017665	ENSG00000155329	ZCCHC10	-	zinc finger CCHC-type containing 10	protein-coding
164751	chr3	69066201	69066580	+	0	NA	intron (NM_003968, intron 6 of 17)	L1MD1|LINE|L1	13975	NM_003968	9039		NM_003968	ENSG00000144744	UBA3	NAE2|UBE1C|hUBA3	ubiquitin like modifier activating enzyme 3	protein-coding
140414	chr2	233104221	233104680	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	44108	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
86874	chr16	67972451	67973180	+	0	NA	Intergenic	Intergenic	-4121	NM_001145962	6560		NM_005072	ENSG00000124067	SLC12A4	CTC-479C5.17|KCC1|hKCC1	solute carrier family 12 member 4	protein-coding
107784	chr18	51107421	51107680	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	77337	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
31364	chr10	93542001	93542300	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-24515	NM_001195755	338557		NM_181745	ENSG00000186188	FFAR4	BMIQ10|GPR120|GPR129|GT01|O3FAR1|OB10Q|PGR4	free fatty acid receptor 4	protein-coding
16829	chr1	155648521	155648780	+	0	NA	Intergenic	Intergenic	30605	NR_132762	106633810		NR_132762		SCARNA26A	-	small Cajal body-specific RNA 26A	ncRNA
110764	chr19	2388401	2388600	+	0	NA	intron (NM_182973, intron 1 of 17)	MLT1D|LTR|ERVL-MaLR	3235	NM_182973	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
229873	chr9	126489601	126489800	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-79196	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
228756	chr9	110158051	110158150	+	0	NA	intron (NM_147150, intron 9 of 9)	intron (NM_147150, intron 9 of 9)	32599	NM_001136562	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
53048	chr12	57621401	57622730	+	0	NA	promoter-TSS (NR_120450)	promoter-TSS (NR_120450)	-162	NR_120450	101927583		NR_120450		LOC101927583	-	uncharacterized LOC101927583	ncRNA
17583	chr1	156850071	156850500	+	0	NA	intron (NM_014215, intron 5 of 21)	AluSx1|SINE|Alu	8832	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
5826	chr1	26692901	26693900	+	0	NA	non-coding (NR_135804, exon 1 of 1)	non-coding (NR_135804, exon 1 of 1)	731	NR_135804	101928728		NR_135804	ENSG00000260063	LOC101928728	-	uncharacterized LOC101928728	ncRNA
114152	chr19	11338551	11338650	+	0	NA	intron (NM_004283, intron 1 of 4)	intron (NM_004283, intron 1 of 4)	1057	NM_004283	9545		NM_004283	ENSG00000105514	RAB3D	D2-2|GOV|RAB16|RAD3D	RAB3D, member RAS oncogene family	protein-coding
175938	chr4	80439521	80440180	+	0	NA	intron (NM_001206997, intron 2 of 6)	L1PA7|LINE|L1	104120	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
22194	chr1	212385451	212385750	+	0	NA	intron (NM_001377478, intron 2 of 6)	intron (NM_001377478, intron 2 of 6)	29286	NR_165303	55248		NM_018252	ENSG00000065600	PACC1	ASOR|C1orf75|PAC|PAORAC|TMEM206|hPAC|hTMEM206	proton activated chloride channel 1	protein-coding
9072	chr1	44835771	44836730	+	0	NA	intron (NM_001166292, intron 2 of 22)	MLT1L|LTR|ERVL-MaLR	6694	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
67969	chr14	74879501	74880430	+	0	NA	Intergenic	Intergenic	-1951	NR_033814	1743		NM_001933	ENSG00000119689	DLST	DLTS|KGD2|PGL7|PPGL7	dihydrolipoamide S-succinyltransferase	protein-coding
170851	chr3	190878051	190878190	+	0	NA	TTS (NR_024343)	TTS (NR_024343)	190	NR_024343	100170222		NR_024343		SNAR-I	snaR-3	small NF90 (ILF3) associated RNA I	snRNA
185604	chr5	131418151	131418250	+	0	NA	Intergenic	AluSz|SINE|Alu	154147	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
221848	chr8	128269371	128269780	+	0	NA	Intergenic	Intergenic	119459	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
205992	chr7	26189871	26190030	+	0	NA	TTS (NM_031243)	TTS (NM_031243)	10796	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
131065	chr2	88637801	88638000	+	0	NA	Intergenic	L1MEg|LINE|L1	10071	NR_135540	101928403		NR_135540	ENSG00000234028	EIF2AK3-DT	-	EIF2AK3 divergent transcript	ncRNA
76232	chr15	73950551	73950650	+	0	NA	intron (NM_005576, intron 6 of 6)	intron (NM_005576, intron 6 of 6)	-22352	NR_040068	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
102036	chr17	74861401	74861800	+	0	NA	promoter-TSS (NM_001278553)	promoter-TSS (NM_001278553)	-757	NM_001278553	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
34726	chr10	133651351	133651450	+	0	NA	Intergenic	Intergenic	-24605	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
38180	chr11	36359951	36361000	+	0	NA	intron (NM_001160167, intron 1 of 8)	intron (NM_001160167, intron 1 of 8)	-15510	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
25545	chr10	7416751	7417400	+	0	NA	Intergenic	Intergenic	-5589	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
189267	chr5	172064751	172065700	+	0	NA	intron (NM_005990, intron 12 of 18)	intron (NM_005990, intron 12 of 18)	-58587	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
124471	chr19	58541801	58542100	+	0	NA	promoter-TSS (NM_001316980)	promoter-TSS (NM_001316980)	-238	NM_001316980	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
212810	chr7	130395571	130395730	+	0	NA	non-coding (NR_046443, exon 11 of 11)	non-coding (NR_046443, exon 11 of 11)	15156	NM_001868	1357		NM_001868	ENSG00000091704	CPA1	CPA	carboxypeptidase A1	protein-coding
146	chr1	522851	523630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-27795	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
90108	chr16	90077071	90078300	+	0	NA	promoter-TSS (NM_001098173)	promoter-TSS (NM_001098173)	-354	NM_001098173	11105		NM_052996	ENSG00000126856	PRDM7	PFM4|ZNF910	PR/SET domain 7	protein-coding
27869	chr10	41854371	41855030	+	0	NA	Intergenic	Intergenic	513345	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
11207	chr1	88857101	88857330	+	0	NA	exon (NM_001514, exon 6 of 7)	exon (NM_001514, exon 6 of 7)	34352	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
90460	chr17	1380921	1381180	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	19172	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
159037	chr3	11270721	11271130	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-1472	NM_001349233	10533		NM_006395	ENSG00000197548	ATG7	APG7-LIKE|APG7L|GSA7|SCAR31	autophagy related 7	protein-coding
175074	chr4	54065871	54066700	+	0	NA	Intergenic	MIR|SINE|MIR	-1680	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
4256	chr1	19641621	19641880	+	0	NA	intron (NM_001204088, intron 2 of 4)	MIR|SINE|MIR	-1479	NM_001278164	4681		NM_005380	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	NBL1, DAN family BMP antagonist	protein-coding
167555	chr3	129370451	129371050	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	26598	NR_002992	677797		NR_002992	ENSG00000207088	SNORA7B	ACA7B	small nucleolar RNA, H/ACA box 7B	snoRNA
71140	chr14	104983021	104983280	+	0	NA	Intergenic	Intergenic	-2638	NM_174891	122616		NM_174891	ENSG00000140104	CLBA1	C14orf79	clathrin binding box of aftiphilin containing 1	protein-coding
135294	chr2	160214551	160214850	+	0	NA	Intergenic	Intergenic	-14387	NM_001282354	3694		NM_000888	ENSG00000115221	ITGB6	AI1H	integrin subunit beta 6	protein-coding
77598	chr15	85259871	85260030	+	0	NA	Intergenic	Intergenic	19599	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
76454	chr15	74836421	74836700	+	0	NA	non-coding (NR_104307, exon 15 of 15)	non-coding (NR_104307, exon 15 of 15)	4147	NR_106942	102465531		NR_106942	ENSG00000275411	MIR6882	hsa-mir-6882	microRNA 6882	ncRNA
90495	chr17	1447421	1448080	+	0	NA	intron (NM_016823, intron 1 of 2)	AluSx1|SINE|Alu	8482	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
90801	chr17	2213571	2214500	+	0	NA	intron (NM_001256827, intron 3 of 11)	intron (NM_001256827, intron 3 of 11)	-18643	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
193081	chr6	28834851	28834950	+	0	NA	Intergenic	Intergenic	28777	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
217361	chr8	27863671	27864230	+	0	NA	Intergenic	Intergenic	22166	NR_036249	100422828		NR_036249	ENSG00000265847	MIR4287	-	microRNA 4287	ncRNA
51500	chr12	52121621	52122680	+	0	NA	Intergenic	Intergenic	28581	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
137630	chr2	197358971	197359330	+	0	NA	Intergenic	Kanga1c|DNA|TcMar-Tc2	-48370	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
200381	chr6	134248301	134248680	+	0	NA	intron (NM_001143676, intron 2 of 13)	AluSg|SINE|Alu	69568	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
158588	chr3	4740651	4741730	+	0	NA	intron (NM_002222, intron 40 of 57)	intron (NM_002222, intron 40 of 57)	10400	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
186213	chr5	134375971	134376130	+	0	NA	intron (NM_003337, intron 2 of 5)	(AT)n|Simple_repeat|Simple_repeat	4481	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
31928	chr10	100531451	100531930	+	0	NA	Intergenic	L1MB7|LINE|L1	-1767	NM_001284368	4714		NM_005004	ENSG00000166136	NDUFB8	ASHI|CI-ASHI|MC1DN32	NADH:ubiquinone oxidoreductase subunit B8	protein-coding
237136	chrX	106917821	106918450	+	0	NA	promoter-TSS (NM_001171095)	promoter-TSS (NM_001171095)	-225	NM_001171095	9075		NM_020384	ENSG00000165376	CLDN2	OAZON|claudin-2	claudin 2	protein-coding
155503	chr22	38677471	38677830	+	0	NA	Intergenic	Intergenic	-4307	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
224255	chr9	5949001	5949700	+	0	NA	intron (NM_001017969, intron 4 of 7)	AluSc5|SINE|Alu	58461	NM_005511	2315		NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
85325	chr16	50038651	50039150	+	0	NA	Intergenic	AluJr|SINE|Alu	13694	NM_153261	255919		NM_153261	ENSG00000205423	CNEP1R1	C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding
235097	chrX	40413321	40413400	+	0	NA	Intergenic	Intergenic	150443	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
223735	chr8	144499401	144499600	+	0	NA	intron (NM_032902, intron 6 of 12)	intron (NM_032902, intron 6 of 12)	-3568	NM_001382665	2875		NM_005309	ENSG00000167701	GPT	AAT1|ALT|ALT1|GPT1|SGPT	glutamic--pyruvic transaminase	protein-coding
194312	chr6	32827001	32827700	+	0	NA	3' UTR (NM_001290043, exon 12 of 12).2	3' UTR (NM_001290043, exon 12 of 12).2	-10348	NM_002120	3112		NM_002120	ENSG00000241106	HLA-DOB	DOB|HLA_DOB	major histocompatibility complex, class II, DO beta	protein-coding
85473	chr16	50686701	50686900	+	0	NA	Intergenic	Intergenic	-5488	NM_001144972	124460		NM_153337	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
105099	chr17	82151021	82151680	+	0	NA	intron (NM_001367828, intron 13 of 16)	intron (NM_001367828, intron 13 of 16)	-53114	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
26139	chr10	13793871	13794030	+	0	NA	intron (NM_018027, intron 5 of 24)	intron (NM_018027, intron 5 of 24)	-86383	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
186982	chr5	139700951	139701800	+	0	NA	Intergenic	Intergenic	25932	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
164939	chr3	71224451	71225300	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	20202	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
193200	chr6	29750101	29750300	+	0	NA	TTS (NR_001590)	TTS (NR_001590)	948	NR_001590	340198		NR_001590	ENSG00000235821	IFITM4P	dJ377H14.5	interferon induced transmembrane protein 4 pseudogene	pseudo
123107	chr19	51608001	51608250	+	0	NA	Intergenic	Intergenic	-13745	NR_034159	729975		NR_034159		LINC01530	-	long intergenic non-protein coding RNA 1530	ncRNA
210537	chr7	100243421	100244080	+	0	NA	intron (NR_166147, intron 1 of 4)	L1M5|LINE|L1	24502	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
151518	chr21	46430521	46431080	+	0	NA	intron (NM_006031, intron 37 of 46)	Penelope1_Vert|LINE|Penelope	-28091	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
78873	chr15	100582301	100582900	+	0	NA	intron (NR_148017, intron 1 of 6)	intron (NR_148017, intron 1 of 6)	19584	NR_148018	55180		NM_018148	ENSG00000140471	LINS1	LINS|MRT27|WINS1	lines homolog 1	protein-coding
111598	chr19	4094571	4094730	+	0	NA	intron (NM_030662, intron 9 of 10)	intron (NM_030662, intron 9 of 10)	-27751	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
172969	chr4	3893651	3893950	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	61628	NR_130742	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
197421	chr6	73583151	73583450	+	0	NA	Intergenic	L1M5|LINE|L1	-62268	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
44744	chr11	111977071	111977630	+	0	NA	promoter-TSS (NM_033425)	promoter-TSS (NM_033425)	41	NM_033425	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
113986	chr19	10830151	10830800	+	0	NA	intron (NM_001190716, intron 20 of 20)	intron (NM_001190716, intron 20 of 20)	1502	NR_106851	102466737		NR_106851	ENSG00000275640	MIR6793	hsa-mir-6793	microRNA 6793	ncRNA
57445	chr12	121908401	121908600	+	0	NA	intron (NR_048555, intron 3 of 4)	intron (NR_048555, intron 3 of 4)	-10092	NM_144668	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
1750	chr1	6003801	6004300	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	11374	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
105142	chr17	82243051	82243730	+	0	NA	non-coding (NR_110578, exon 9 of 9)	non-coding (NR_110578, exon 9 of 9)	6722	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
134881	chr2	148874471	148875900	+	0	NA	promoter-TSS (NM_004522).2	promoter-TSS (NM_004522).2	-42	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
209430	chr7	76377901	76378300	+	0	NA	Intergenic	Intergenic	-19109	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
16595	chr1	155047451	155048150	+	0	NA	exon (NM_001143687, exon 14 of 16)	exon (NM_001143687, exon 14 of 16)	3365	NR_040772	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
216923	chr8	22718221	22718680	+	0	NA	intron (NM_001363233, intron 6 of 6)	intron (NM_001363233, intron 6 of 6)	-24970	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
165858	chr3	105876701	105877500	+	0	NA	Intergenic	Intergenic	-7699	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
234030	chrX	3811501	3812300	+	0	NA	Intergenic	Intergenic	31994	NR_034031	389906		NM_001045547	ENSG00000285756	LOC389906	-	zinc finger protein 839 pseudogene	pseudo
154108	chr22	31090671	31090830	+	0	NA	intron (NR_168473, intron 9 of 20)	intron (NR_168473, intron 9 of 20)	5754	NM_001207018	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
160931	chr3	36881171	36881330	+	0	NA	intron (NM_014831, intron 7 of 22)	AluSx|SINE|Alu	-58750	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
42926	chr11	73398551	73399330	+	0	NA	Intergenic	Intergenic	22272	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
69619	chr14	97620201	97621450	+	0	NA	Intergenic	Intergenic	65833	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
99898	chr17	56838551	56839050	+	0	NA	intron (NM_003647, intron 2 of 11)	L1ME2z|LINE|L1	4649	NM_003647	8526		NM_003647	ENSG00000153933	DGKE	AHUS7|DAGK5|DAGK6|DGK|NPHS7	diacylglycerol kinase epsilon	protein-coding
217867	chr8	37840101	37840500	+	0	NA	intron (NM_032777, intron 17 of 18)	intron (NM_032777, intron 17 of 18)	9561	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
103911	chr17	79817521	79818700	+	0	NA	Intergenic	Intergenic	-5342	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
130889	chr2	87424451	87426150	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-30127	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
200887	chr6	138984021	138985130	+	0	NA	intron (NM_031922, intron 1 of 19)	MER20|DNA|hAT-Charlie	3678	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
146472	chr20	49750851	49751150	+	0	NA	Intergenic	Intergenic	-37122	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
93210	chr17	17826301	17827080	+	0	NA	intron (NM_001005291, intron 1 of 19)	intron (NM_001005291, intron 1 of 19)	-3060	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
113578	chr19	10268251	10268430	+	0	NA	Intergenic	Intergenic	-2780	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
236971	chrX	101395821	101396300	+	0	NA	TTS (NM_021029)	TTS (NM_021029)	5049	NM_021029	6173		NM_021029	ENSG00000241343	RPL36A	L36A|L44L|MIG6|RPL44|eL42	ribosomal protein L36a	protein-coding
16560	chr1	154970321	154971250	+	0	NA	promoter-TSS (NM_001130040)	promoter-TSS (NM_001130040)	-38	NM_183001	6464		NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding
210316	chr7	99475901	99476300	+	0	NA	intron (NM_001350999, intron 1 of 3)	AluSc8|SINE|Alu	3208	NM_001351000	285989		NM_213603	ENSG00000198556	ZNF789	-	zinc finger protein 789	protein-coding
26337	chr10	15185251	15185780	+	0	NA	Intergenic	Intergenic	-16822	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
80304	chr16	2267221	2269680	+	0	NA	promoter-TSS (NR_104485)	promoter-TSS (NR_104485)	-213	NR_132988	106660606		NR_132988	ENSG00000260778	MIR3677HG	-	MIR3677 and MIR940 host gene	ncRNA
134387	chr2	136362721	136363380	+	0	NA	Intergenic	MIRb|SINE|MIR	-244901	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
158976	chr3	10256351	10256850	+	0	NA	intron (NM_014760, intron 2 of 7)	Charlie8|DNA|hAT-Charlie	8141	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
204389	chr7	3032671	3033030	+	0	NA	intron (NM_001324281, intron 1 of 25)	AluJr|SINE|Alu	11017	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
3428	chr1	15852051	15852350	+	0	NA	intron (NM_015001, intron 1 of 14)	intron (NM_015001, intron 1 of 14)	-4053	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
27671	chr10	33101121	33101380	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	15557	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
188294	chr5	151148171	151148980	+	0	NA	intron (NM_001363114, intron 1 of 24)	L2a|LINE|L2	-6891	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
99191	chr17	49494371	49495550	+	0	NA	promoter-TSS (NM_002507)	promoter-TSS (NM_002507)	-333	NM_002507	4804		NM_002507	ENSG00000064300	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
146565	chr20	50048121	50048880	+	0	NA	Intergenic	L2c|LINE|L2	-6871	NR_051976	100887755		NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
463	chr1	1142901	1143300	+	0	NA	non-coding (NR_038869, exon 3 of 3)	non-coding (NR_038869, exon 3 of 3)	6083	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
5576	chr1	25988751	25988850	+	0	NA	intron (NM_000437, intron 3 of 10)	AluSq2|SINE|Alu	9263	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
66806	chr14	64728121	64728880	+	0	NA	intron (NM_001308147, intron 2 of 16)	MLT1C|LTR|ERVL-MaLR	24076	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
159804	chr3	16336751	16337230	+	0	NA	intron (NM_015150, intron 7 of 9)	MLT1H|LTR|ERVL-MaLR	71778	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
62061	chr13	92187401	92187650	+	0	NA	intron (NM_004466, intron 7 of 7)	intron (NM_004466, intron 7 of 7)	164682	NR_120382	100873970		NR_120382		GPC5-AS2	-	GPC5 antisense RNA 2	ncRNA
101352	chr17	67139621	67140080	+	0	NA	intron (NM_001330447, intron 21 of 32)	intron (NM_001330447, intron 21 of 32)	95296	NM_000727	786		NM_000727	ENSG00000108878	CACNG1	CACNLG	calcium voltage-gated channel auxiliary subunit gamma 1	protein-coding
81556	chr16	9121071	9121480	+	0	NA	3' UTR (NM_014117, exon 4 of 4)	3' UTR (NM_014117, exon 4 of 4)	29631	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
82152	chr16	14832551	14832850	+	0	NA	Intergenic	AluY|SINE|Alu	-1014	NM_001004067	408050		NM_001004067	ENSG00000103226	NOMO3	Nomo	NODAL modulator 3	protein-coding
73573	chr15	44441051	44441350	+	0	NA	intron (NM_016396, intron 1 of 12)	intron (NM_016396, intron 1 of 12)	13571	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
36625	chr11	7512351	7512720	+	0	NA	Intergenic	Intergenic	-1464	NM_001351854	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
173265	chr4	7048021	7048400	+	0	NA	intron (NM_152293, intron 1 of 1)	intron (NM_152293, intron 1 of 1)	-1979	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
107298	chr18	44758971	44759700	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	58460	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
162755	chr3	49058671	49059030	+	0	NA	intron (NM_001320580, intron 3 of 10)	AluSp|SINE|Alu	-29452	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
32944	chr10	110358851	110359350	+	0	NA	Intergenic	Intergenic	-54180	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
120479	chr19	44746401	44746600	+	0	NA	Intergenic	Intergenic	-2208	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
226721	chr9	75170971	75171130	+	0	NA	Intergenic	MER72|LTR|ERV1	82536	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
168424	chr3	142446751	142446850	+	0	NA	intron (NM_019001, intron 1 of 41)	intron (NM_019001, intron 1 of 41)	1237	NM_019001	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
48310	chr12	8999571	9000130	+	0	NA	intron (NM_005810, intron 3 of 4)	AluSz|SINE|Alu	10225	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
56267	chr12	112015401	112015700	+	0	NA	intron (NM_001034025, intron 1 of 1)	intron (NM_001034025, intron 1 of 1)	2124	NM_006817	10961		NM_006817	ENSG00000089248	ERP29	C12orf8|ERp28|ERp31|HEL-S-107|PDI-DB|PDIA9	endoplasmic reticulum protein 29	protein-coding
167632	chr3	129597551	129597880	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	8961	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
85095	chr16	33338501	33338800	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-8309	NR_158162	105369266		NR_158162		LOC105369266	-	uncharacterized LOC105369266	ncRNA
41477	chr11	66160721	66161380	+	0	NA	intron (NM_018026, intron 1 of 23)	MIR|SINE|MIR	90778	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
13054	chr1	111442801	111443000	+	0	NA	intron (NR_133654, intron 6 of 8)	MIR|SINE|MIR	6356	NM_024102	79084		NM_024102	ENSG00000116455	WDR77	HKMT1069|MEP-50|MEP50|Nbla10071|p44|p44/Mep50	WD repeat domain 77	protein-coding
112007	chr19	4980771	4981200	+	0	NA	intron (NM_001370093, intron 1 of 11)	intron (NM_001370093, intron 1 of 11)	11872	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
116322	chr19	17823551	17823900	+	0	NA	Intergenic	Intergenic	-2206	NM_001265587	3640		NM_005543	ENSG00000248099	INSL3	RLF|RLNL|ley-I-L	insulin like 3	protein-coding
202928	chr6	160400321	160400580	+	0	NA	intron (NM_021977, intron 2 of 10)	L1MC1|LINE|L1	52072	NM_021977	6581		NM_021977	ENSG00000146477	SLC22A3	EMT|EMTH|OCT3	solute carrier family 22 member 3	protein-coding
190650	chr5	181235671	181236380	+	0	NA	TTS (NR_045218)	TTS (NR_045218)	5864	NR_002592	619571		NR_002592	ENSG00000272296	SNORD96A	U96A	small nucleolar RNA, C/D box 96A	snoRNA
20282	chr1	196651651	196651950	+	0	NA	promoter-TSS (NM_000186)	promoter-TSS (NM_000186)	-78	NM_001014975	3075		NM_000186	ENSG00000000971	CFH	AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS	complement factor H	protein-coding
174859	chr4	48681971	48682330	+	0	NA	intron (NM_015030, intron 3 of 63)	intron (NM_015030, intron 3 of 63)	98129	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
193814	chr6	31468351	31468950	+	0	NA	Intergenic	Intergenic	-2579	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
47859	chr12	6629701	6630530	+	0	NA	intron (NM_020400, intron 1 of 1)	intron (NM_020400, intron 1 of 1)	1534	NM_001142961	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
38833	chr11	47315971	47316800	+	0	NA	intron (NR_164842, intron 29 of 33)	AluSg4|SINE|Alu	36317	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
147943	chr20	62951471	62951930	+	0	NA	Intergenic	Intergenic	-1009	NM_001302643	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
79947	chr16	1763701	1763900	+	0	NA	intron (NM_001318852, intron 17 of 31)	G-rich|Low_complexity|Low_complexity	7909	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
232513	chr9	136308171	136308330	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-1349	NM_001291516	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
84816	chr16	31080301	31080700	+	0	NA	exon (NM_014699, exon 2 of 3)	exon (NM_014699, exon 2 of 3)	6078	NM_014699	9726		NM_014699	ENSG00000167395	ZNF646	-	zinc finger protein 646	protein-coding
83666	chr16	28360801	28361980	+	0	NA	intron (NM_001282524, intron 1 of 6)	intron (NM_001282524, intron 1 of 6)	1470	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
87340	chr16	70331551	70331950	+	0	NA	exon (NM_001014449, exon 8 of 10)	exon (NM_001014449, exon 8 of 10)	14997	NR_039997	100506083		NR_039997	ENSG00000261777	DDX19A-DT	-	DDX19A divergent transcript	ncRNA
135788	chr2	169801051	169802050	+	0	NA	intron (NM_003142, intron 2 of 11)	AluSx|SINE|Alu	2248	NM_001294145	6741		NM_003142	ENSG00000138385	SSB	LARP3|La|La/SSB	small RNA binding exonuclease protection factor La	protein-coding
2255	chr1	8910351	8910650	+	0	NA	Intergenic	L2|LINE|L2	31665	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
85060	chr16	32040101	32040300	+	0	NA	Intergenic	Intergenic	147913	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
183326	chr5	76719621	76720230	+	0	NA	intron (NM_001992, intron 1 of 1)	intron (NM_001992, intron 1 of 1)	3799	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
55420	chr12	104490701	104492150	+	0	NA	intron (NM_018413, intron 1 of 2)	L2a|LINE|L2	34477	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
201704	chr6	149706101	149706880	+	0	NA	intron (NM_001350339, intron 1 of 9)	AluJb|SINE|Alu	9935	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
186495	chr5	138241751	138242480	+	0	NA	Intergenic	CpG	-28792	NM_004661	8697		NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
217438	chr8	28515271	28515630	+	0	NA	intron (NM_017412, intron 3 of 7)	MER50|LTR|ERV1	-10268	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	ncRNA
138703	chr2	213116601	213116800	+	0	NA	intron (NM_001371277, intron 3 of 6)	AluJr|SINE|Alu	33737	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
190900	chr6	2777821	2778080	+	0	NA	intron (NM_020135, intron 3 of 6)	intron (NM_020135, intron 3 of 6)	-7574	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
170357	chr3	184568551	184568650	+	0	NA	intron (NM_004443, intron 1 of 15)	intron (NM_004443, intron 1 of 15)	6815	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
26906	chr10	26448401	26450830	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	11274	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
94973	chr17	32263421	32263680	+	0	NA	Intergenic	AluY|SINE|Alu	-2282	NM_001330181	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
13542	chr1	115087351	115088080	+	0	NA	intron (NM_001308315, intron 1 of 6)	MIRb|SINE|MIR	1785	NM_001308315	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
34203	chr10	129072321	129072580	+	0	NA	Intergenic	Intergenic	159617	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
160759	chr3	32579151	32579950	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-8626	NM_001329135	51143		NM_016141	ENSG00000144635	DYNC1LI1	DLC-A|DLIC-1|DNCLI1|LIC1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding
234217	chrX	12977271	12977500	+	0	NA	TTS (NM_021109)	TTS (NM_021109)	2275	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
104219	chr17	80621951	80622250	+	0	NA	intron (NM_020761, intron 1 of 33)	intron (NM_020761, intron 1 of 33)	77262	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
65635	chr14	52309871	52310230	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-4262	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
78001	chr15	89654871	89655030	+	0	NA	intron (NM_198525, intron 1 of 18)	CpG	517	NM_198525	374654		NM_198525	ENSG00000166813	KIF7	ACLS|AGBK|HLS2|JBTS12|MMEDF|UNQ340	kinesin family member 7	protein-coding
107266	chr18	42038471	42038830	+	0	NA	intron (NM_002647, intron 17 of 24)	(AACTT)n|Simple_repeat|Simple_repeat	83416	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
102584	chr17	75881171	75881330	+	0	NA	Intergenic	AluSz|SINE|Alu	-2669	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
110286	chr19	1825371	1825530	+	0	NA	TTS (NR_152847)	TTS (NR_152847)	3361	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
122475	chr19	49550551	49550850	+	0	NA	Intergenic	AluJo|SINE|Alu	22697	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
90286	chr17	1024201	1024600	+	0	NA	intron (NM_001282149, intron 11 of 17).3	MIR|SINE|MIR	-1841	NR_036148	100422835		NR_036148	ENSG00000264429	MIR3183	mir-3183	microRNA 3183	ncRNA
54408	chr12	90076671	90077300	+	0	NA	Intergenic	Intergenic	129292	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
54160	chr12	76673171	76673630	+	0	NA	Intergenic	AluY|SINE|Alu	-90715	NM_015336	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
117109	chr19	19200771	19200930	+	0	NA	TTS (NM_001300945)	TTS (NM_001300945)	2564	NM_176880	126382		NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
132885	chr2	111251421	111251880	+	0	NA	intron (NR_136161, intron 3 of 5)	intron (NR_136161, intron 3 of 5)	69436	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
138954	chr2	218257171	218258400	+	0	NA	Intergenic	Intergenic	-1711	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
134014	chr2	131035951	131036050	+	0	NA	intron (NM_001375904, intron 2 of 10)	intron (NM_001375904, intron 2 of 10)	57162	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
236308	chrX	68508871	68509680	+	0	NA	intron (NM_001195214, intron 1 of 5)	AluJr|SINE|Alu	10224	NM_173834	286451		NM_173834	ENSG00000181704	YIPF6	FinGER6|YIPFalpha3|Yip4	Yip1 domain family member 6	protein-coding
201953	chr6	151807971	151808330	+	0	NA	promoter-TSS (NM_001328100)	promoter-TSS (NM_001328100)	468	NM_001385572	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
70189	chr14	100439271	100439430	+	0	NA	intron (NM_001350949, intron 2 of 6)	intron (NM_001350949, intron 2 of 6)	62865	NM_001350947	79446		NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
205618	chr7	22445421	22445680	+	0	NA	intron (NM_001164460, intron 4 of 4)	intron (NM_001164460, intron 4 of 4)	54638	NM_001382447	256227		NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
27520	chr10	32306421	32307030	+	0	NA	intron (NR_168508, intron 1 of 12)	MIRb|SINE|MIR	40433	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
50719	chr12	48965771	48966650	+	0	NA	exon (NM_003394, exon 5 of 5)	exon (NM_003394, exon 5 of 5)	5525	NM_003394	7480		NM_003394	ENSG00000169884	WNT10B	SHFM6|STHAG8|WNT-12	Wnt family member 10B	protein-coding
9115	chr1	45332271	45332830	+	0	NA	intron (NR_146883, intron 7 of 15)	intron (NR_146883, intron 7 of 15)	5655	NM_032756	84842		NM_032756	ENSG00000186603	HPDL	4-HPPD-L|GLOXD1|NEDSWMA|SPG83	4-hydroxyphenylpyruvate dioxygenase like	protein-coding
189139	chr5	171311121	171311780	+	0	NA	exon (NM_021025, exon 3 of 3)	exon (NM_021025, exon 3 of 3)	2202	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
200506	chr6	135624201	135625000	+	0	NA	intron (NR_152845, intron 2 of 4)	intron (NR_152845, intron 2 of 4)	126799	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
212204	chr7	118185601	118186000	+	0	NA	intron (NM_016200, intron 2 of 3)	intron (NM_016200, intron 2 of 3)	1636	NM_016200	51691		NM_016200	ENSG00000128534	LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding
97637	chr17	44191221	44192080	+	0	NA	TTS (NM_001382312)	TTS (NM_001382312)	4447	NM_001353175	79089		NM_024107	ENSG00000168591	TMUB2	FP2653	transmembrane and ubiquitin like domain containing 2	protein-coding
208252	chr7	65571151	65571630	+	0	NA	Intergenic	Intergenic	-16325	NR_157838	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
222251	chr8	133217021	133218600	+	0	NA	intron (NM_001204869, intron 2 of 2)	MER5B|DNA|hAT-Charlie	26771	NM_080838	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
96902	chr17	42126871	42127030	+	0	NA	intron (NM_004583, intron 4 of 5)	intron (NM_004583, intron 4 of 5)	4146	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
54195	chr12	79848101	79849050	+	0	NA	intron (NM_001143885, intron 3 of 25)	intron (NM_001143885, intron 3 of 25)	65336	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
218060	chr8	38905021	38906500	+	0	NA	intron (NM_021623, intron 1 of 11)	AluSc8|SINE|Alu	4414	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
122562	chr19	49661771	49662530	+	0	NA	exon (NM_001197122, exon 6 of 8)	exon (NM_001197122, exon 6 of 8)	-2992	NM_001282519	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
90073	chr16	90008821	90009550	+	0	NA	promoter-TSS (NM_001371581)	promoter-TSS (NM_001371581)	-181	NM_001371581	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
166225	chr3	112114701	112115300	+	0	NA	intron (NM_024616, intron 5 of 5)	intron (NM_024616, intron 5 of 5)	2199	NR_030292	693152		NR_030292	ENSG00000207940	MIR567	MIRN567|hsa-mir-567	microRNA 567	ncRNA
108561	chr18	74916371	74916980	+	0	NA	intron (NM_001384475, intron 7 of 8)	intron (NM_001384475, intron 7 of 8)	285712	NM_001146190	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
205485	chr7	17772671	17773230	+	0	NA	Intergenic	Intergenic	167544	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
68424	chr14	81216821	81217080	+	0	NA	intron (NM_201595, intron 1 of 8)	intron (NM_201595, intron 1 of 8)	4009	NM_001278940	2957		NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding
96371	chr17	40102051	40102350	+	0	NA	Intergenic	Intergenic	-1611	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
146104	chr20	47727051	47728350	+	0	NA	intron (NM_198596, intron 3 of 20)	intron (NM_198596, intron 3 of 20)	58364	NM_018837	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
225574	chr9	36023221	36023680	+	0	NA	Intergenic	Intergenic	-13463	NM_001316345	8434		NM_021111	ENSG00000122707	RECK	ST15	reversion inducing cysteine rich protein with kazal motifs	protein-coding
204083	chr7	2100371	2101030	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-11648	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
138604	chr2	208265451	208267150	+	0	NA	promoter-TSS (NM_152671)	promoter-TSS (NM_152671)	33	NM_152671	200576		NM_015040	ENSG00000115020	PIKFYVE	CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29	phosphoinositide kinase, FYVE-type zinc finger containing	protein-coding
139395	chr2	222305051	222305350	+	0	NA	TTS (NR_161172)	TTS (NR_161172)	-6202	NM_000438	5077		NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|PAX-3|WS1|WS3	paired box 3	protein-coding
12317	chr1	100941821	100942080	+	0	NA	intron (NM_133496, intron 8 of 10)	intron (NM_133496, intron 8 of 10)	45860	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
36272	chr11	3794171	3794850	+	0	NA	intron (NR_157590, intron 1 of 31)	AluSx|SINE|Alu	3036	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
201603	chr6	149359501	149359700	+	0	NA	intron (NM_001369506, intron 2 of 7)	L1MEd|LINE|L1	-40662	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
94062	chr17	27453651	27453750	+	0	NA	Intergenic	Intergenic	-2748	NM_001367810	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
78363	chr15	91369651	91370350	+	0	NA	Intergenic	Intergenic	-93339	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
43345	chr11	76664701	76665950	+	0	NA	intron (NM_001370190, intron 1 of 1)	L2c|LINE|L2	4613	NM_001370189	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
97720	chr17	44353301	44354300	+	0	NA	TTS (NM_002087)	TTS (NM_002087)	8498	NM_002087	2896		NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin precursor	protein-coding
112444	chr19	6371821	6372800	+	0	NA	promoter-TSS (NM_032306)	promoter-TSS (NM_032306)	-484	NM_032306	84266		NM_032306	ENSG00000125652	ALKBH7	ABH7|SPATA11|UNQ6002	alkB homolog 7	protein-coding
20966	chr1	202464201	202464430	+	0	NA	intron (NM_032103, intron 1 of 11)	intron (NM_032103, intron 1 of 11)	1601	NM_032104	4660		NM_002481	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1 regulatory subunit 12B	protein-coding
195338	chr6	36622071	36622400	+	0	NA	TTS (NR_037491)	TTS (NR_037491)	277	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
17052	chr1	156091801	156092250	+	0	NA	intron (NM_001282625, intron 3 of 12)	AluSq|SINE|Alu	9452	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
105226	chr17	82358601	82359200	+	0	NA	promoter-TSS (NM_207459)	promoter-TSS (NM_207459)	-347	NM_207459	400629		NM_207459	ENSG00000182459	TEX19	-	testis expressed 19	protein-coding
206141	chr7	27774701	27774900	+	0	NA	intron (NM_006024, intron 5 of 16)	intron (NM_006024, intron 5 of 16)	34705	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
86928	chr16	68092421	68093230	+	0	NA	intron (NM_173165, intron 1 of 9)	intron (NM_173165, intron 1 of 9)	7455	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
229091	chr9	114372801	114373720	+	0	NA	intron (NM_001317952, intron 3 of 20)	intron (NM_001317952, intron 3 of 20)	14722	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
47696	chr12	6424721	6425100	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-20045	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
130253	chr2	84852071	84852530	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	28784	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
64680	chr14	32202801	32204450	+	0	NA	promoter-TSS (NR_104084).4	promoter-TSS (NR_104084).4	-356	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
4470	chr1	21370771	21370930	+	0	NA	Intergenic	Intergenic	-25346	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
168209	chr3	141237821	141238400	+	0	NA	intron (NM_152282, intron 3 of 7)	intron (NM_152282, intron 3 of 7)	6285	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
13746	chr1	116915071	116915430	+	0	NA	intron (NM_020440, intron 1 of 8)	intron (NM_020440, intron 1 of 8)	5334	NM_020440	5738		NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
207751	chr7	48108021	48108280	+	0	NA	intron (NM_001287426, intron 9 of 9)	intron (NM_001287426, intron 9 of 9)	18885	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
120497	chr19	44767751	44768450	+	0	NA	Intergenic	Intergenic	9443	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
17544	chr1	156796051	156796150	+	0	NA	intron (NM_005973, intron 5 of 6)	MamSINE1|SINE|tRNA-RTE	-19650	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
221438	chr8	124030551	124030650	+	0	NA	intron (NM_001039112, intron 18 of 40)	intron (NM_001039112, intron 18 of 40)	10182	NR_040044	439941		NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
203065	chr6	166257701	166258200	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	20981	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
228635	chr9	105883571	105883930	+	0	NA	Intergenic	Intergenic	189209	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
237278	chrX	111123171	111124180	+	0	NA	non-coding (NR_136746, exon 6 of 6)	non-coding (NR_136746, exon 6 of 6)	598	NM_001128172	5063		NM_002578	ENSG00000077264	PAK3	ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|XLID30|bPAK|beta-PAK	p21 (RAC1) activated kinase 3	protein-coding
190365	chr5	179736171	179736880	+	0	NA	intron (NM_014757, intron 1 of 4)	AluSc8|SINE|Alu	3703	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
90962	chr17	2687651	2688650	+	0	NA	Intergenic	AluSq|SINE|Alu	4769	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
215545	chr7	158791071	158791530	+	0	NA	intron (NM_020728, intron 4 of 21)	L1MB3|LINE|L1	38209	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
188972	chr5	163478701	163479080	+	0	NA	intron (NM_012484, intron 12 of 17)	L2|LINE|L2	15168	NR_109892	101927813		NR_109892		HMMR-AS1	-	HMMR antisense RNA 1	ncRNA
120836	chr19	45506051	45507990	+	0	NA	promoter-TSS (NM_003370)	promoter-TSS (NM_003370)	-459	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
24066	chr1	235312851	235313580	+	0	NA	intron (NM_016374, intron 2 of 23)	AluSz|SINE|Alu	-14001	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
151740	chr22	17779371	17779750	+	0	NA	TTS (NR_103718)	TTS (NR_103718)	2270	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
106991	chr18	32033771	32034580	+	0	NA	intron (NM_017831, intron 1 of 5)	intron (NM_017831, intron 1 of 5)	15350	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
120511	chr19	44814501	44814980	+	0	NA	exon (NM_005581, exon 8 of 15)	exon (NM_005581, exon 8 of 15)	5637	NM_005581	4059		NM_005581	ENSG00000187244	BCAM	AU|B-CAM|CD239|F8/G253|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
69311	chr14	93177801	93178600	+	0	NA	Intergenic	Intergenic	6697	NM_022151	64112		NM_022151	ENSG00000165943	MOAP1	MAP-1|PNMA4	modulator of apoptosis 1	protein-coding
192063	chr6	16611871	16612030	+	0	NA	intron (NM_000332, intron 4 of 8)	AluY|SINE|Alu	148234	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
156578	chr22	41517551	41518330	+	0	NA	intron (NM_001098, intron 7 of 17)	intron (NM_001098, intron 7 of 17)	26530	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
121109	chr19	45952571	45953500	+	0	NA	intron (NM_002516, intron 3 of 3)	CpG	20830	NM_002516	4858		NM_002516	ENSG00000104967	NOVA2	ANOVA|NEDASB|NOVA-2|NOVA3	NOVA alternative splicing regulator 2	protein-coding
8998	chr1	44675871	44676530	+	0	NA	intron (NM_001145636, intron 1 of 11)	L2|LINE|L2	1486	NM_001145636	339541		NM_001004307	ENSG00000198520	ARMH1	C1orf228|NCRNA00082|p40	armadillo like helical domain containing 1	protein-coding
200702	chr6	137390601	137391000	+	0	NA	Intergenic	Intergenic	103594	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
82911	chr16	21661071	21661630	+	0	NA	Intergenic	Intergenic	-2618	NM_144672	146183		NM_144672	ENSG00000155719	OTOA	CT108|DFNB22	otoancorin	protein-coding
122766	chr19	50136821	50137500	+	0	NA	Intergenic	Intergenic	2077	NR_024230	100170217		NR_024230		SNAR-B2	-	small NF90 (ILF3) associated RNA B2	snRNA
98245	chr17	46168621	46169080	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	23932	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
49172	chr12	15077721	15078050	+	0	NA	Intergenic	L1PBa|LINE|L1	-74038	NR_046559	100873980		NR_046559	ENSG00000255660	RERG-AS1	-	RERG antisense RNA 1	ncRNA
6238	chr1	27532071	27532630	+	0	NA	Intergenic	Intergenic	-42183	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
210425	chr7	100082501	100083850	+	0	NA	promoter-TSS (NM_001278287)	promoter-TSS (NM_001278287)	-598	NM_001278284	7551		NM_017715	ENSG00000166526	ZNF3	A8-51|HF.12|KOX25|PP838|Zfp113	zinc finger protein 3	protein-coding
189248	chr5	172005841	172007800	+	0	NA	promoter-TSS (NM_001378979)	promoter-TSS (NM_001378979)	-182	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
9275	chr1	46339721	46341400	+	0	NA	promoter-TSS (NM_001256128)	promoter-TSS (NM_001256128)	383	NM_199044	387338		NM_199044	ENSG00000117481	NSUN4	SHTAP	NOP2/Sun RNA methyltransferase 4	protein-coding
27379	chr10	30936721	30936980	+	0	NA	intron (NM_001143771, intron 2 of 7)	intron (NM_001143771, intron 2 of 7)	62667	NM_001143769	220929		NM_182755	ENSG00000183621	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
172806	chr4	3009321	3009850	+	0	NA	intron (NM_001350173, intron 5 of 13)	intron (NM_001350173, intron 5 of 13)	46014	NM_005307	2868		NM_005307	ENSG00000125388	GRK4	GPRK2L|GPRK4|GRK4a|IT11	G protein-coupled receptor kinase 4	protein-coding
141741	chr2	241879901	241880100	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-1363	NR_110220	101927289		NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
25810	chr10	11192771	11192930	+	0	NA	intron (NM_001326346, intron 2 of 11)	MER5B|DNA|hAT-Charlie	27820	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
165970	chr3	107988471	107988980	+	0	NA	Intergenic	Intergenic	102306	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
181273	chr5	39269071	39269730	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	1249	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
221867	chr8	128362001	128362200	+	0	NA	Intergenic	Intergenic	202579	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
10500	chr1	66533051	66533350	+	0	NA	promoter-TSS (NM_001376539)	promoter-TSS (NM_001376539)	-161	NM_001376535	84251		NM_032291	ENSG00000118473	SGIP1	-	SH3GL interacting endocytic adaptor 1	protein-coding
192369	chr6	24702621	24703130	+	0	NA	3' UTR (NM_001160094, exon 4 of 4)	3' UTR (NM_001160094, exon 4 of 4)	16279	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
223656	chr8	144361021	144361850	+	0	NA	TTS (NM_001253815)	TTS (NM_001253815)	2822	NM_001363122	79581		NM_024531	ENSG00000185803	SLC52A2	BVVLS2|D15Ertd747e|GPCR41|GPR172A|HuPAR-1|PAR1|RFT3|RFVT2|hRFT3	solute carrier family 52 member 2	protein-coding
172587	chr4	2477201	2477800	+	0	NA	intron (NM_001185009, intron 2 of 8)	AluSg|SINE|Alu	8047	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
137937	chr2	201115571	201117000	+	0	NA	non-coding (NR_147251, exon 1 of 11)	non-coding (NR_147251, exon 1 of 11)	121	NR_147244	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
207939	chr7	51121821	51122330	+	0	NA	intron (NM_001346441, intron 6 of 12)	intron (NM_001346441, intron 6 of 12)	194734	NM_001346441	23242		NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
193257	chr6	29952501	29952730	+	0	NA	Intergenic	Charlie9|DNA|hAT-Charlie	10083	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
215827	chr8	6583801	6584000	+	0	NA	intron (NM_001322042, intron 12 of 14)	intron (NM_001322042, intron 12 of 14)	-20655	NM_001118887	285		NM_001147	ENSG00000091879	ANGPT2	AGPT2|ANG2|LMPHM10	angiopoietin 2	protein-coding
86364	chr16	66548051	66548680	+	0	NA	intron (NM_001271934, intron 2 of 10)	intron (NM_001271934, intron 2 of 10)	1757	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
236645	chrX	75159671	75159830	+	0	NA	intron (NM_001363821, intron 1 of 9)	L1ME3Cz|LINE|L1	3381	NM_001363821	139596		NM_145052	ENSG00000094841	UPRT	FUR1|UPP	uracil phosphoribosyltransferase homolog	protein-coding
123150	chr19	52176401	52177000	+	0	NA	Intergenic	LTR3A|LTR|ERVK	-5079	NM_001102657	162962		NM_001102657	ENSG00000196267	ZNF836	-	zinc finger protein 836	protein-coding
31874	chr10	100184001	100184200	+	0	NA	intron (NM_006459, intron 1 of 10)	intron (NM_006459, intron 1 of 10)	1929	NM_001100626	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
232132	chr9	134021501	134021850	+	0	NA	Intergenic	MER49|LTR|ERV1	-3801	NR_149319	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
100354	chr17	59922571	59922930	+	0	NA	intron (NR_161455, intron 4 of 13)	AluSc|SINE|Alu	29629	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
194737	chr6	33858951	33859250	+	0	NA	Intergenic	MIR|SINE|MIR	37807	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
65910	chr14	55284471	55284630	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	12396	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
74155	chr15	55275351	55276180	+	0	NA	intron (NM_183235, intron 1 of 6)	L1MA6|LINE|L1	-4843	NM_183236	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
122798	chr19	50359771	50360600	+	0	NA	intron (NM_004851, intron 5 of 8)	intron (NM_004851, intron 5 of 8)	5454	NM_004851	9476		NM_004851	ENSG00000131400	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
181540	chr5	43073021	43073280	+	0	NA	intron (NR_102752, intron 2 of 2)	HERVH48-int|LTR|ERV1	-5711	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
144574	chr20	35773101	35774980	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	2025	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
46392	chr11	126305801	126306230	+	0	NA	intron (NM_001350236, intron 1 of 5)	MIR3|SINE|MIR	1955	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
223906	chr9	446951	448280	+	0	NA	intron (NM_203447, intron 44 of 47)	Tigger13a|DNA|TcMar-Tigger	-22676	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
174283	chr4	38319721	38320750	+	0	NA	Intergenic	Intergenic	-46679	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
212429	chr7	128347651	128348100	+	0	NA	Intergenic	Intergenic	-3967	NM_018077	55131		NM_018077	ENSG00000106344	RBM28	ANES|NOP4	RNA binding motif protein 28	protein-coding
18211	chr1	160989801	160990880	+	0	NA	Intergenic	AluSq2|SINE|Alu	30812	NM_001348091	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
234854	chrX	24708801	24709000	+	0	NA	intron (NR_165483, intron 4 of 35)	SVA_F|Retroposon|SVA	14982	NM_001330360	5422		NM_016937	ENSG00000101868	POLA1	NSX|PDR|POLA|VEODS|p180	DNA polymerase alpha 1, catalytic subunit	protein-coding
171135	chr3	195546921	195547180	+	0	NA	Intergenic	Intergenic	-3725	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
45468	chr11	118568651	118569230	+	0	NA	Intergenic	AluSz|SINE|Alu	-2864	NM_020153	56912		NM_020153	ENSG00000118096	IFT46	C11orf2|C11orf60|CFAP32|FAP32	intraflagellar transport 46	protein-coding
213187	chr7	132473821	132474580	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	102270	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
186778	chr5	139344321	139345030	+	0	NA	intron (NM_001033112, intron 1 of 3)	intron (NM_001033112, intron 1 of 3)	2241	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
44783	chr11	112555451	112555980	+	0	NA	promoter-TSS (NR_104155)	promoter-TSS (NR_104155)	87	NR_104155	387810		NR_104155	ENSG00000255484	LINC02764	-	long intergenic non-protein coding RNA 2764	ncRNA
96679	chr17	41120221	41120680	+	0	NA	intron (NM_001277332, intron 3 of 5)	intron (NM_001277332, intron 3 of 5)	-2077	NM_033059	653240		NM_033059	ENSG00000212721	KRTAP4-11	KAP4.11|KAP4.14|KRTAP4-14|KRTAP4.14	keratin associated protein 4-11	protein-coding
209375	chr7	76301351	76301450	+	0	NA	Intergenic	MIR|SINE|MIR	-1273	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
178052	chr4	139735921	139736180	+	0	NA	intron (NM_018717, intron 2 of 4)	intron (NM_018717, intron 2 of 4)	70231	NM_001204368	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
174912	chr4	49104371	49104800	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	117943	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
45100	chr11	117091121	117091530	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSq2|SINE|Alu	7103	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
209840	chr7	89622221	89622480	+	0	NA	Intergenic	L1PA16|LINE|L1	-497050	NR_003551	442523		NR_003551	ENSG00000291119	DPY19L2P4	-	DPY19L2 pseudogene 4	pseudo
58914	chr13	19735001	19735200	+	0	NA	intron (NM_001354909, intron 5 of 8)	AluSq2|SINE|Alu	47845	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
183688	chr5	80738421	80738680	+	0	NA	intron (NM_002439, intron 10 of 23)	LTR82B|LTR|ERVL	-83567	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
180993	chr5	35815171	35816250	+	0	NA	Intergenic	L2a|LINE|L2	-41181	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
204555	chr7	5131251	5132200	+	0	NA	intron (NR_034163, intron 3 of 5)	AluSz|SINE|Alu	12821	NR_034163	645700		NR_034163	ENSG00000291037	ZNF890P	-	zinc finger protein 890, pseudogene	pseudo
81752	chr16	11403321	11403780	+	0	NA	intron (NM_001370704, intron 48 of 66)	intron (NM_001370704, intron 48 of 66)	58091	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
153322	chr22	24270501	24271980	+	0	NA	intron (NM_001254732, intron 1 of 14)	CpG	409	NM_001254732	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
125895	chr2	24743371	24743550	+	0	NA	intron (NM_147233, intron 17 of 20)	Charlie24|DNA|hAT-Charlie	-49655	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
196894	chr6	52298051	52298150	+	0	NA	Intergenic	Intergenic	-13358	NM_001270472	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
149354	chr21	29233121	29233630	+	0	NA	intron (NR_027072, intron 1 of 1)	MER57A1|LTR|ERV1	39881	NR_027072	193629		NM_138968	ENSG00000215533	LINC00189	C21orf109|NCRNA00189	long intergenic non-protein coding RNA 189	ncRNA
107032	chr18	32103301	32103500	+	0	NA	intron (NM_198128, intron 1 of 4)	AluJo|SINE|Alu	10794	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
50207	chr12	46199071	46199880	+	0	NA	intron (NM_001278387, intron 14 of 17)	AluJo|SINE|Alu	67041	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
89903	chr16	89695551	89695850	+	0	NA	TTS (NM_152339)	TTS (NM_152339)	6005	NM_152339	124044		NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
79538	chr16	859221	859750	+	0	NA	intron (NR_147885, intron 10 of 11)	CpG	54042	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
44128	chr11	96091571	96092480	+	0	NA	exon (NM_032427, exon 2 of 5)	exon (NM_032427, exon 2 of 5)	-167918	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
235046	chrX	40099001	40100080	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG-29594	-1582	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
62303	chr13	99009301	99009500	+	0	NA	intron (NM_001318849, intron 1 of 54)	CR1_Mam|LINE|CR1	6385	NM_001366677	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
183415	chr5	78290971	78291580	+	0	NA	intron (NM_003664, intron 1 of 26)	intron (NM_003664, intron 1 of 26)	3423	NM_003664	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
9746	chr1	53287171	53287330	+	0	NA	intron (NM_017522, intron 3 of 15)	intron (NM_017522, intron 3 of 15)	40820	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
60866	chr13	45847271	45848030	+	0	NA	intron (NM_198849, intron 1 of 1)	intron (NM_198849, intron 1 of 1)	4103	NM_198849	283514		NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
79769	chr16	1366671	1367380	+	0	NA	intron (NM_001193389, intron 5 of 5)	intron (NM_001193389, intron 5 of 5)	12627	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
1445	chr1	2644451	2644750	+	0	NA	intron (NM_001242672, intron 6 of 7)	intron (NM_001242672, intron 6 of 7)	-11584	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
44821	chr11	113879221	113879650	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-3863	NM_001346252	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
61335	chr13	50594221	50594980	+	0	NA	Intergenic	Intergenic	-67151	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
239158	chrY	11539171	11539400	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	882305	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
148995	chr21	14403651	14403980	+	0	NA	Intergenic	Intergenic	-20669	NM_006948	6782		NM_006948	ENSG00000155304	HSPA13	STCH	heat shock protein family A (Hsp70) member 13	protein-coding
19067	chr1	169926071	169926430	+	0	NA	intron (NM_001375831, intron 19 of 20)	L3|LINE|CR1	-32291	NM_181093	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
92006	chr17	7452651	7453030	+	0	NA	intron (NM_000747, intron 7 of 10)	AluSz|SINE|Alu	7779	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
40956	chr11	65337051	65337150	+	0	NA	intron (NM_001330308, intron 1 of 11)	intron (NM_001330308, intron 1 of 11)	3248	NM_001330308	5977		NM_006268	ENSG00000133884	DPF2	CSS7|REQ|SMARCG2|UBID4|ubi-d4	double PHD fingers 2	protein-coding
191883	chr6	15327021	15327750	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	78530	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
67747	chr14	73709601	73709800	+	0	NA	Intergenic	AluJr4|SINE|Alu	4684	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
204632	chr7	5398801	5399380	+	0	NA	intron (NM_001080495, intron 2 of 29)	intron (NM_001080495, intron 2 of 29)	24456	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
34522	chr10	132685301	132685500	+	0	NA	intron (NM_001321042, intron 1 of 12)	intron (NM_001321042, intron 1 of 12)	4125	NM_001321042	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
81272	chr16	4641951	4642250	+	0	NA	intron (NM_001142291, intron 1 of 15)	intron (NM_001142291, intron 1 of 15)	17274	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
179417	chr4	184266651	184266950	+	0	NA	Intergenic	AluSz|SINE|Alu	-48927	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
96861	chr17	42034021	42034280	+	0	NA	intron (NM_001378270, intron 4 of 8)	intron (NM_001378270, intron 4 of 8)	14060	NM_001144929	28511		NM_017595	ENSG00000168256	NKIRAS2	KBRAS2|kappaB-Ras2	NFKB inhibitor interacting Ras like 2	protein-coding
133704	chr2	127324851	127324950	+	0	NA	intron (NM_001371910, intron 9 of 16)	intron (NM_001371910, intron 9 of 16)	18329	NM_006609	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
35664	chr11	1868001	1868280	+	0	NA	promoter-TSS (NM_001013253)	promoter-TSS (NM_001013253)	-566	NM_001013253	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
162636	chr3	48810921	48811180	+	0	NA	intron (NM_004157, intron 1 of 10)	AluJo|SINE|Alu	36824	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
177619	chr4	121165921	121166230	+	0	NA	intron (NM_001128843, intron 3 of 12)	intron (NM_001128843, intron 3 of 12)	-1754	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
4583	chr1	22071701	22072880	+	0	NA	intron (NM_044472, intron 1 of 5)	AluYm1|SINE|Alu	19581	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
198813	chr6	109046171	109046700	+	0	NA	intron (NM_014454, intron 1 of 9)	SVA_D|Retroposon|SVA	-36880	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
222314	chr8	133496301	133497200	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	75137	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
174666	chr4	41281171	41281350	+	0	NA	Intergenic	Intergenic	24332	NM_004181	7345		NM_004181	ENSG00000154277	UCHL1	HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|SPG79A|UCHL-1|Uch-L1	ubiquitin C-terminal hydrolase L1	protein-coding
32983	chr10	110510201	110510930	+	0	NA	3' UTR (NM_004419, exon 4 of 4)	3' UTR (NM_004419, exon 4 of 4)	12658	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
96168	chr17	39706821	39707430	+	0	NA	exon (NM_001382787, exon 2 of 27)	exon (NM_001382787, exon 2 of 27)	7061	NM_004448	2064		NM_004448	ENSG00000141736	ERBB2	CD340|HER-2|HER-2/neu|HER2|MLN 19|MLN-19|NEU|NGL|TKR1|VSCN2|c-ERB-2|c-ERB2|p185(erbB2)	erb-b2 receptor tyrosine kinase 2	protein-coding
96400	chr17	40142451	40142750	+	0	NA	intron (NM_007359, intron 3 of 13)	AluSz6|SINE|Alu	2063	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
72740	chr15	39420821	39421080	+	0	NA	Intergenic	L1PA2|LINE|L1	-160129	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
176463	chr4	89307201	89309280	+	0	NA	promoter-TSS (NM_198281)	promoter-TSS (NM_198281)	-440	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
167389	chr3	128877801	128878000	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1590	NR_033426	28976		NM_014049	ENSG00000177646	ACAD9	MC1DN20|NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
133603	chr2	121974951	121975600	+	0	NA	Intergenic	Intergenic	219624	NM_004622	7247		NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
235373	chrX	44908321	44908930	+	0	NA	intron (NM_001291416, intron 2 of 28)	MLT1G|LTR|ERVL-MaLR	35437	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
44056	chr11	95229671	95231900	+	0	NA	exon (NM_144665, exon 1 of 10)	exon (NM_144665, exon 1 of 10)	417	NM_144665	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
22002	chr1	209773251	209773350	+	0	NA	intron (NM_025228, intron 9 of 16)	intron (NM_025228, intron 9 of 16)	4735	NM_001287754	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
195790	chr6	40912371	40912550	+	0	NA	intron (NR_110873, intron 1 of 5)	LTR67B|LTR|ERVL	110820	NR_110873	101929555		NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
87019	chr16	68260551	68260800	+	0	NA	3' UTR (NM_012320, exon 6 of 6)	3' UTR (NM_012320, exon 6 of 6)	-3851	NM_003983	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
221361	chr8	123315421	123316030	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-32309	NR_037516	100500863		NR_037516	ENSG00000207704	MIR548AA1	-	microRNA 548aa-1	ncRNA
97131	chr17	42543071	42543430	+	0	NA	exon (NM_000263, exon 6 of 6)	exon (NM_000263, exon 6 of 6)	7009	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
80122	chr16	2036371	2036530	+	0	NA	exon (NM_001252073, exon 2 of 6)	exon (NM_001252073, exon 2 of 6)	3156	NM_001252075	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
28478	chr10	49540871	49541250	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-1522	NM_001277059	2074		NM_000124	ENSG00000225830	ERCC6	ARMD5|CKN2|COFS|COFS1|CSB|CSB-PGBD3|POF11|RAD26|UVSS1	ERCC excision repair 6, chromatin remodeling factor	protein-coding
215321	chr7	157350301	157350950	+	0	NA	intron (NM_001363676, intron 1 of 6)	intron (NM_001363676, intron 1 of 6)	13621	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
95745	chr17	38595771	38596150	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	9992	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
177787	chr4	123015901	123016100	+	0	NA	intron (NM_001317799, intron 10 of 10)	SVA_D|Retroposon|SVA	92922	NM_001345856	166378		NM_145207	ENSG00000145375	AFG2A	AFG2|EHLMRS|NEDHSB|SPAF|SPATA5	AFG2 AAA ATPase homolog A	protein-coding
73605	chr15	44555051	44555950	+	0	NA	intron (NM_001284335, intron 5 of 6)	intron (NM_001284335, intron 5 of 6)	18353	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
197233	chr6	69515571	69515730	+	0	NA	Intergenic	L1PA2|LINE|L1	280816	NM_001363722	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
133953	chr2	130575001	130575200	+	0	NA	intron (NR_027314, intron 1 of 1)	AluSc5|SINE|Alu	4251	NR_027314	150527		NR_027313	ENSG00000290614	PRSS40A	TISP43	serine protease 40A (pseudogene)	pseudo
52439	chr12	55914671	55915430	+	0	NA	intron (NM_032345, intron 1 of 2)	AluSc8|SINE|Alu	12075	NM_001143853	84305		NM_032345	ENSG00000170473	PYM1	PYM|WIBG	PYM homolog 1, exon junction complex associated factor	protein-coding
55893	chr12	109721651	109721750	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	7875	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
165699	chr3	102059271	102060000	+	0	NA	Intergenic	Intergenic	-104070	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
146828	chr20	51406421	51407230	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	46152	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
14692	chr1	145882671	145883030	+	0	NA	intron (NM_144698, intron 1 of 13)	intron (NM_144698, intron 1 of 13)	3016	NM_144698	148741		NM_144698	ENSG00000198483	ANKRD35	-	ankyrin repeat domain 35	protein-coding
195461	chr6	37021651	37022780	+	0	NA	intron (NM_173558, intron 12 of 15)	intron (NM_173558, intron 12 of 15)	16560	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
97838	chr17	44942321	44942580	+	0	NA	intron (NM_001264573, intron 1 of 14)	intron (NM_001264573, intron 1 of 14)	5323	NM_001264573	146909		NM_001080443	ENSG00000186185	KIF18B	-	kinesin family member 18B	protein-coding
55922	chr12	109852871	109853780	+	0	NA	intron (NM_016433, intron 4 of 4)	intron (NM_016433, intron 4 of 4)	-19927	NM_021625	59341		NM_021625	ENSG00000111199	TRPV4	BCYM3|CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC	transient receptor potential cation channel subfamily V member 4	protein-coding
127598	chr2	42858671	42859200	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-66352	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
179591	chr4	185395271	185397000	+	0	NA	promoter-TSS (NM_181726)	promoter-TSS (NM_181726)	-211	NM_001377440	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
238981	chrX	155592551	155592850	+	0	NA	intron (NM_018196, intron 1 of 7)	L1MA8|LINE|L1	-19865	NM_001304990	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
27177	chr10	28546101	28546700	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	13282	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
161161	chr3	39097751	39098980	+	0	NA	exon (NM_001278790, exon 6 of 6)	exon (NM_001278790, exon 6 of 6)	9262	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
148482	chr20	64052801	64053000	+	0	NA	Intergenic	Intergenic	-3261	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
71017	chr14	104758851	104759430	+	0	NA	intron (NM_006427, intron 3 of 3)	MLT1C|LTR|ERVL-MaLR	5993	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
81625	chr16	10869901	10870400	+	0	NA	Intergenic	Intergenic	-7048	NM_000246	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
99697	chr17	50838001	50838200	+	0	NA	intron (NM_175575, intron 1 of 1)	intron (NM_175575, intron 1 of 1)	2514	NM_175575	124857		NM_175575	ENSG00000173714	WFIKKN2	GASP-1|WFDC20B|WFIKKNRP|hGASP-1	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding
154824	chr22	37054301	37054500	+	0	NA	intron (NM_001282685, intron 2 of 6)	intron (NM_001282685, intron 2 of 6)	2664	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
183293	chr5	76549901	76550100	+	0	NA	intron (NM_001285460, intron 1 of 34)	MLT1B-int|LTR|ERVL-MaLR	2591	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
61213	chr13	49507101	49507500	+	0	NA	intron (NR_135323, intron 3 of 11)	intron (NR_135323, intron 3 of 11)	10244	NM_001040444	51131		NM_001040443	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
219456	chr8	73092751	73093450	+	0	NA	promoter-TSS (NM_153225)	promoter-TSS (NM_153225)	72	NM_153225	157869		NM_153225	ENSG00000164764	SBSPON	C8orf84|RPESP	somatomedin B and thrombospondin type 1 domain containing	protein-coding
227189	chr9	87938501	87938900	+	0	NA	intron (NR_149022, intron 1 of 3)	REP522|Satellite|telo	560	NR_149022	497256		NR_149022		LOC497256	-	uncharacterized LOC497256	ncRNA
15711	chr1	151011001	151011650	+	0	NA	intron (NR_130130, intron 1 of 3)	intron (NR_130130, intron 1 of 3)	2876	NR_130135	58497		NM_021222	ENSG00000143363	PRUNE1	DRES-17|DRES17|H-PRUNE|HTCD37|NMIHBA|PRUNE	prune exopolyphosphatase 1	protein-coding
167083	chr3	127227121	127227380	+	0	NA	Intergenic	(CCT)n|Simple_repeat|Simple_repeat	34119	NM_001007534	285311		NM_001007534	ENSG00000214324	PRR23E	C3orf56	PRR23 family member E	protein-coding
235079	chrX	40176201	40177430	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	462	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
11719	chr1	91877301	91877500	+	0	NA	intron (NM_001195684, intron 2 of 17)	AluJb|SINE|Alu	8751	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
145255	chr20	39047851	39048550	+	0	NA	Intergenic	Intergenic	85856	NR_033905	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
105077	chr17	82100771	82100930	+	0	NA	TTS (NM_198082)	TTS (NM_198082)	-2614	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
111762	chr19	4387121	4387580	+	0	NA	intron (NM_001199943, intron 1 of 8)	AluJo|SINE|Alu	13197	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
39578	chr11	61160771	61162350	+	0	NA	promoter-TSS (NM_017966)	promoter-TSS (NM_017966)	-134	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
141412	chr2	240924771	240925430	+	0	NA	intron (NM_001351305, intron 4 of 31)	intron (NM_001351305, intron 4 of 31)	18764	NM_001351305	728763		NM_001351305	ENSG00000226321	CROCC2	-	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding
9227	chr1	45735571	45735950	+	0	NA	intron (NM_001145349, intron 3 of 9)	AluSz|SINE|Alu	14893	NM_005897	3652		NM_005897	ENSG00000197429	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
48049	chr12	7014551	7014850	+	0	NA	intron (NM_005768, intron 1 of 12)	AluSc|SINE|Alu	3776	NM_005768	10162		NM_005768	ENSG00000111684	LPCAT3	C3F|LPCAT|LPLAT 5|LPLAT12|LPSAT|MBOAT5|OACT5|nessy	lysophosphatidylcholine acyltransferase 3	protein-coding
125722	chr2	20634051	20634350	+	0	NA	intron (NM_022460, intron 4 of 6)	intron (NM_022460, intron 4 of 6)	16898	NM_022460	64342		NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
2052	chr1	7842621	7842880	+	0	NA	exon (NM_001289861, exon 23 of 23)	exon (NM_001289861, exon 23 of 23)	10315	NM_006786	10911		NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
231911	chr9	133094921	133095180	+	0	NA	Intergenic	L1M4|LINE|L1	12511	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
122284	chr19	49082571	49082730	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2801	NM_003089	6625		NM_003089	ENSG00000104852	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein U1 subunit 70	protein-coding
127566	chr2	42523151	42523650	+	0	NA	intron (NM_001282755, intron 2 of 17)	MLT1J2|LTR|ERVL-MaLR	28831	NM_001282755	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
3290	chr1	15323451	15324330	+	0	NA	intron (NM_052929, intron 10 of 30)	intron (NM_052929, intron 10 of 30)	19993	NR_148918	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
156986	chr22	42500061	42501400	+	0	NA	intron (NR_027786, intron 1 of 10)	CpG	151	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
36556	chr11	6621171	6622130	+	0	NA	3' UTR (NM_003737, exon 21 of 21)	3' UTR (NM_003737, exon 21 of 21)	-2228	NM_000391	1200		NM_000391	ENSG00000166340	TPP1	CLN2|GIG1|LPIC|SCAR7|TPP-1	tripeptidyl peptidase 1	protein-coding
25458	chr10	6611971	6612730	+	0	NA	Intergenic	L1MB8|LINE|L1	-6366	NR_120634	101928150		NR_120634		LINC02648	-	long intergenic non-protein coding RNA 2648	ncRNA
124519	chr2	166451	166750	+	0	NA	Intergenic	MIRb|SINE|MIR	89740	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
57558	chr12	122211221	122211880	+	0	NA	intron (NM_019887, intron 6 of 6)	AluJo|SINE|Alu	7841	NM_030765	79369		NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
56494	chr12	116262371	116262530	+	0	NA	intron (NM_015335, intron 1 of 30)	intron (NM_015335, intron 1 of 30)	15243	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
170300	chr3	184331821	184332700	+	0	NA	intron (NM_198244, intron 29 of 29)	intron (NM_198244, intron 29 of 29)	-3666	NM_001366134	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
190957	chr6	2919021	2919580	+	0	NA	Intergenic	MER41B|LTR|ERV1	-15991	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
163423	chr3	50566651	50568290	+	0	NA	5' UTR (NM_001171743, exon 1 of 5)	5' UTR (NM_001171743, exon 1 of 5)	277	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
135972	chr2	172098801	172099380	+	0	NA	TTS (NM_004405)	TTS (NM_004405)	3810	NM_004405	1746		NM_004405	ENSG00000115844	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
232964	chr9	136959801	136961830	+	0	NA	Intergenic	Intergenic	8542	NM_178536	286256		NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
222087	chr8	130386771	130386930	+	0	NA	intron (NM_001247996, intron 2 of 30)	MER131|DNA?|DNA?	56810	NM_001362924	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
159128	chr3	12635721	12636180	+	0	NA	intron (NM_001354691, intron 1 of 16)	AluY|SINE|Alu	27558	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
128261	chr2	54574281	54575950	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	16721	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
102262	chr17	75276371	75276930	+	0	NA	intron (NM_001126121, intron 7 of 7)	AluSx1|SINE|Alu	5351	NR_036520	100287042		NR_036520	ENSG00000263843	MIF4GD-DT	-	MIF4GD divergent transcript	ncRNA
174698	chr4	42489021	42489480	+	0	NA	intron (NM_001105529, intron 23 of 35)	intron (NM_001105529, intron 23 of 35)	91762	NM_001080505	152573		NM_001080505	ENSG00000178343	SHISA3	hShisa3	shisa family member 3	protein-coding
190607	chr5	181173021	181173750	+	0	NA	Intergenic	AluJb|SINE|Alu	18442	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
220206	chr8	96155651	96156480	+	0	NA	intron (NM_001001557, intron 1 of 1)	intron (NM_001001557, intron 1 of 1)	4741	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
8034	chr1	38052751	38053600	+	0	NA	intron (NR_168386, intron 1 of 4)	intron (NR_168386, intron 1 of 4)	6041	NR_168387	105378653		NR_168386		MIR3659HG	-	MIR3659 host gene	ncRNA
21794	chr1	207049551	207050300	+	0	NA	intron (NM_018566, intron 1 of 1)	intron (NM_018566, intron 1 of 1)	1283	NM_018566	55432		NM_018566	ENSG00000180667	YOD1	DUBA8|OTUD2|PRO0907	YOD1 deubiquitinase	protein-coding
46022	chr11	122632351	122632650	+	0	NA	Intergenic	Intergenic	-23222	NM_001363365	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
202551	chr6	158651021	158651600	+	0	NA	intron (NM_001242395, intron 1 of 15)	intron (NM_001242395, intron 1 of 15)	1296	NM_001242394	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
228552	chr9	101533151	101534530	+	0	NA	promoter-TSS (NM_019592)	promoter-TSS (NM_019592)	-13	NM_019592	56254		NM_019592	ENSG00000155827	RNF20	BRE1|BRE1A|hBRE1	ring finger protein 20	protein-coding
233352	chr9	137455821	137456480	+	0	NA	intron (NM_001130969, intron 4 of 15)	intron (NM_001130969, intron 4 of 15)	3184	NM_001130971	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
217848	chr8	37749171	37749480	+	0	NA	intron (NM_007175, intron 6 of 11)	intron (NM_007175, intron 6 of 11)	-1279	NR_003671	728024		NR_003671		LOC728024	-	STING1 ER exit protein 1 pseudogene	pseudo
112050	chr19	5141001	5141200	+	0	NA	intron (NM_015015, intron 18 of 22)	intron (NM_015015, intron 18 of 22)	171987	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
122330	chr19	49150141	49150950	+	0	NA	TTS (NM_002152)	TTS (NM_002152)	4851	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
162114	chr3	46926001	46926330	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	43916	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
71834	chr15	22194841	22195550	+	0	NA	Intergenic	Intergenic	-16599	NR_135666	646370		NR_135666		IGHV1OR15-3	IGHV1OR153	immunoglobulin heavy variable 1/OR15-3 (pseudogene)	pseudo
205274	chr7	8202051	8202580	+	0	NA	intron (NR_146926, intron 6 of 13)	MIRb|SINE|MIR	59852	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
51557	chr12	52561801	52562200	+	0	NA	Intergenic	Intergenic	-8855	NM_033448	112802		NM_033448	ENSG00000139648	KRT71	HYPT13|K6IRS1|KRT6IRS|KRT6IRS1	keratin 71	protein-coding
43569	chr11	83061801	83062280	+	0	NA	intron (NM_014488, intron 1 of 5)	intron (NM_014488, intron 1 of 5)	9422	NM_001286061	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
20228	chr1	193178721	193178980	+	0	NA	3' UTR (NM_003783, exon 2 of 2)	3' UTR (NM_003783, exon 2 of 2)	7763	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
92578	chr17	9232701	9233450	+	0	NA	intron (NM_004822, intron 6 of 6)	intron (NM_004822, intron 6 of 6)	-53957	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
151156	chr21	44926221	44927000	+	0	NA	intron (NR_038311, intron 2 of 4)	intron (NR_038311, intron 2 of 4)	2205	NM_001127491	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
154475	chr22	35611721	35611980	+	0	NA	intron (NM_001382813, intron 1 of 2)	intron (NM_001382813, intron 1 of 2)	5479	NM_005368	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
100942	chr17	64483101	64483580	+	0	NA	intron (NM_007215, intron 5 of 7)	AluJb|SINE|Alu	13714	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
3927	chr1	17435471	17435700	+	0	NA	intron (NM_018715, intron 2 of 12).2	intron (NM_018715, intron 2 of 12).2	2951	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
155073	chr22	37555271	37555430	+	0	NA	Intergenic	Intergenic	-5130	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
128697	chr2	61537701	61539650	+	0	NA	promoter-TSS (NM_003400)	promoter-TSS (NM_003400)	-319	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
52220	chr12	54385401	54385600	+	0	NA	promoter-TSS (NM_015481)	promoter-TSS (NM_015481)	279	NM_001290004	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
187471	chr5	142137051	142137550	+	0	NA	intron (NM_030571, intron 4 of 7)	AluJb|SINE|Alu	28521	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
131402	chr2	96271721	96271980	+	0	NA	3' UTR (NM_004804, exon 7 of 7)	3' UTR (NM_004804, exon 7 of 7)	5625	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
9990	chr1	55071551	55071730	+	0	NA	intron (NM_015306, intron 67 of 67)	intron (NM_015306, intron 67 of 67)	31418	NR_110451	255738		NM_174936	ENSG00000169174	PCSK9	FH3|FHCL3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
56385	chr12	113182371	113182730	+	0	NA	intron (NM_024072, intron 1 of 19)	intron (NM_024072, intron 1 of 19)	2928	NM_024072	79039		NM_024072	ENSG00000123064	DDX54	DP97	DEAD-box helicase 54	protein-coding
212453	chr7	128421951	128422300	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-12143	NM_183243	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
220435	chr8	100303771	100304580	+	0	NA	promoter-TSS (NM_015435)	promoter-TSS (NM_015435)	-916	NM_015435	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
87463	chr16	71483921	71485080	+	0	NA	intron (NM_006961, intron 2 of 5)	intron (NM_006961, intron 2 of 5)	4824	NM_006961	7567		NM_006961	ENSG00000157429	ZNF19	KOX12	zinc finger protein 19	protein-coding
48671	chr12	10551171	10551900	+	0	NA	Intergenic	Intergenic	-1844	NR_146455	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
193349	chr6	30227501	30228230	+	0	NA	Intergenic	LTR43B|LTR|ERV1	-14459	NM_001242783	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
94842	chr17	31490971	31491130	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	2942	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
57023	chr12	120650071	120650230	+	0	NA	promoter-TSS (NM_031205)	promoter-TSS (NM_031205)	-127	NM_004276	9478		NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
86266	chr16	58497671	58498580	+	0	NA	intron (NM_022910, intron 3 of 15)	intron (NM_022910, intron 3 of 15)	-2018	NR_040072	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
32697	chr10	103986251	103986600	+	0	NA	intron (NM_014720, intron 1 of 18)	MER1A|DNA|hAT-Charlie	19285	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
43738	chr11	86064951	86065050	+	0	NA	intron (NM_001206947, intron 1 of 18)	AluJb|SINE|Alu	4084	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
110826	chr19	2486921	2487180	+	0	NA	Intergenic	AluSx3|SINE|Alu	10923	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
38299	chr11	43579051	43580300	+	0	NA	Intergenic	CpG	-1719	NR_029697	406918		NR_029697	ENSG00000199077	MIR129-2	MIR-129b|MIRN129-2|mir-129-2	microRNA 129-2	ncRNA
230244	chr9	127884201	127885300	+	0	NA	TTS (NM_013443)	TTS (NM_013443)	-5129	NM_001318121	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
225468	chr9	35570751	35571130	+	0	NA	Intergenic	AluJr|SINE|Alu	-7062	NM_001099951	730112		NM_001099951	ENSG00000215187	CIMIP2B	FAM166B	ciliary microtubule inner protein 2B	protein-coding
121799	chr19	47910651	47911500	+	0	NA	Intergenic	L1P4|LINE|L1	-1976	NR_024220	100170225		NR_024220		SNAR-C1	-	small NF90 (ILF3) associated RNA C1	snRNA
239441	chrY	56706021	56706450	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-248020	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
21178	chr1	203793671	203794200	+	0	NA	Intergenic	MER104|DNA|TcMar-Tc2	-1688	NM_001376342	9877		NM_014827	ENSG00000058673	ZC3H11A	ZC3HDC11A	zinc finger CCCH-type containing 11A	protein-coding
33672	chr10	119870101	119870830	+	0	NA	intron (NM_001256379, intron 1 of 15)	intron (NM_001256379, intron 1 of 15)	2378	NM_001256378	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
12527	chr1	108556271	108556830	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-3550	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
211428	chr7	105060071	105061030	+	0	NA	intron (NM_182931, intron 3 of 26)	AluJr4|SINE|Alu	46345	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
218625	chr8	56156721	56157450	+	0	NA	Intergenic	Intergenic	-43103	NM_005372	4342		NM_005372	ENSG00000172680	MOS	MSV|OZEMA20	MOS proto-oncogene, serine/threonine kinase	protein-coding
77018	chr15	78618301	78619050	+	0	NA	intron (NR_046313, intron 2 of 7)	intron (NR_046313, intron 2 of 7)	2321	NM_000743	1136		NM_000743	ENSG00000080644	CHRNA3	BAIPRCK|LNCR2|NACHRA3|PAOD2	cholinergic receptor nicotinic alpha 3 subunit	protein-coding
149942	chr21	36322551	36322650	+	0	NA	intron (NM_001320445, intron 1 of 15)	AluSx|SINE|Alu	2403	NM_015358	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
132225	chr2	102261921	102262580	+	0	NA	Intergenic	L2|LINE|L2	-49252	NM_001282408	9173		NM_003856	ENSG00000115602	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor like 1	protein-coding
130047	chr2	74428021	74428480	+	0	NA	intron (NM_001015056, intron 9 of 11)	intron (NM_001015056, intron 9 of 11)	6520	NM_032118	84058		NM_032118	ENSG00000005448	WDR54	-	WD repeat domain 54	protein-coding
11250	chr1	88991601	88993650	+	0	NA	promoter-TSS (NM_001008661)	promoter-TSS (NM_001008661)	4	NM_001162536	494115		NM_019610	ENSG00000213516	RBMXL1	RBM1	RBMX like 1	protein-coding
200049	chr6	129774901	129775330	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-64938	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
154562	chr22	36241701	36242100	+	0	NA	Intergenic	AluY|SINE|Alu	-1946	NM_145637	23780		NM_030882	ENSG00000128335	APOL2	APOL-II|APOL3	apolipoprotein L2	protein-coding
166885	chr3	124468251	124468450	+	0	NA	intron (NM_001322990, intron 25 of 33)	intron (NM_001322990, intron 25 of 33)	94018	NR_106731	102464832		NR_106731	ENSG00000276656	MIR6083	hsa-mir-6083	microRNA 6083	ncRNA
175504	chr4	73653671	73654000	+	0	NA	Intergenic	Intergenic	-33204	NM_001270392	166824		NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding
191368	chr6	7309421	7309680	+	0	NA	intron (NR_120448, intron 2 of 6)	THE1C|LTR|ERVL-MaLR	3649	NM_003144	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
148278	chr20	63695571	63695730	+	0	NA	exon (NM_001283009, exon 34 of 35)	exon (NM_001283009, exon 34 of 35)	-1002	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
68959	chr14	91412371	91412530	+	0	NA	intron (NM_001080414, intron 2 of 29)	AluY|SINE|Alu	5370	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
21871	chr1	207698901	207699130	+	0	NA	intron (NM_175710, intron 7 of 11)	intron (NM_175710, intron 7 of 11)	-53023	NM_002389	4179		NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding
25879	chr10	11258401	11258780	+	0	NA	intron (NM_001326346, intron 4 of 11)	intron (NM_001326346, intron 4 of 11)	86084	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
27310	chr10	30490371	30490730	+	0	NA	Intergenic	Intergenic	55904	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
5725	chr1	26410001	26410500	+	0	NA	promoter-TSS (NM_024674)	promoter-TSS (NM_024674)	-567	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
24846	chr10	436801	437800	+	0	NA	intron (NM_014974, intron 4 of 36)	intron (NM_014974, intron 4 of 36)	-191264	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
107641	chr18	48962901	48963730	+	0	NA	Intergenic	Intergenic	-12604	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
200192	chr6	131059471	131059830	+	0	NA	intron (NM_001350314, intron 1 of 15)	intron (NM_001350314, intron 1 of 15)	3595	NM_001431	2037		NM_001431	ENSG00000079819	EPB41L2	4.1-G|4.1G	erythrocyte membrane protein band 4.1 like 2	protein-coding
28859	chr10	62638201	62638650	+	0	NA	Intergenic	Intergenic	-166295	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
200343	chr6	133966901	133967680	+	0	NA	intron (NM_004865, intron 1 of 6)	intron (NM_004865, intron 1 of 6)	14066	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
65979	chr14	57066971	57067150	+	0	NA	Intergenic	Intergenic	201845	NM_006544	10640		NM_006544	ENSG00000070367	EXOC5	HSEC10|PRO1912|SEC10|SEC10L1|SEC10P	exocyst complex component 5	protein-coding
61971	chr13	79449951	79450450	+	0	NA	Intergenic	Intergenic	-30924	NM_001161407	54602		NM_019080	ENSG00000102471	NDFIP2	N4WBP5A	Nedd4 family interacting protein 2	protein-coding
225496	chr9	35654871	35655430	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	2868	NR_003051	6023		NR_003051	ENSG00000277027	RMRP	CHH|NME1|RMRPR|RRP2	RNA component of mitochondrial RNA processing endoribonuclease	ncRNA
170138	chr3	183404121	183404630	+	0	NA	intron (NM_015078, intron 1 of 29)	intron (NM_015078, intron 1 of 29)	23894	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
64946	chr14	35821901	35822200	+	0	NA	Intergenic	Intergenic	-4288	NM_032352	84312		NM_032352	ENSG00000100916	BRMS1L	BRMS1|p40	BRMS1 like transcriptional repressor	protein-coding
99983	chr17	57646021	57646480	+	0	NA	intron (NM_138962, intron 10 of 13)	L2b|LINE|L2	-37838	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
196539	chr6	44003651	44003950	+	0	NA	promoter-TSS (NR_125865)	promoter-TSS (NR_125865)	-150	NR_125865	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
986	chr1	1828801	1829450	+	0	NA	intron (NM_001282539, intron 1 of 10)	AluSq2|SINE|Alu	-49094	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
206458	chr7	32891401	32893500	+	0	NA	promoter-TSS (NM_015483)	promoter-TSS (NM_015483)	-690	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
10231	chr1	63320171	63320730	+	0	NA	TTS (NR_121637)	TTS (NR_121637)	2008	NR_121634	100996301		NR_121634	ENSG00000230798	FOXD3-AS1	FAST|pasFOXD3	FOXD3 antisense RNA 1	ncRNA
161622	chr3	43246701	43247250	+	0	NA	Intergenic	Mam_R4|LINE|Dong-R4	-39537	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
202045	chr6	153210171	153210400	+	0	NA	Intergenic	UCON25|Unknown|Unknown	-79003	NM_012419	26575		NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G protein signaling 17	protein-coding
200227	chr6	131530821	131531680	+	0	NA	Intergenic	L1P2|LINE|L1	-41976	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
216812	chr8	22564421	22564880	+	0	NA	intron (NM_005775, intron 10 of 20)	L2a|LINE|L2	-1079	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
61302	chr13	50244671	50245330	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	72982	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
117777	chr19	29716251	29717650	+	0	NA	Intergenic	AluSx|SINE|Alu	-1161	NM_001256047	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
130229	chr2	84821101	84821500	+	0	NA	TTS (NM_001277053)	TTS (NM_001277053)	59784	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
153052	chr22	23278751	23279950	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	16583	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
1311	chr1	2400851	2401800	+	0	NA	intron (NM_007033, intron 5 of 6)	(CCTCCCT)n|Simple_repeat|Simple_repeat	9484	NM_007033	11079		NM_007033	ENSG00000157916	RER1	-	retention in endoplasmic reticulum sorting receptor 1	protein-coding
237995	chrX	134718801	134719030	+	0	NA	intron (NM_001316887, intron 2 of 3)	intron (NM_001316887, intron 2 of 3)	14721	NM_001316888	10761		NM_021796	ENSG00000170965	PLAC1	CT92|OOSP2B|OOSP2L	placenta enriched 1	protein-coding
39006	chr11	47723451	47723750	+	0	NA	intron (NM_015308, intron 14 of 16)	AluJb|SINE|Alu	-8231	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
180154	chr5	1381801	1382000	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1827	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
96610	chr17	40550801	40551030	+	0	NA	Intergenic	MIR3|SINE|MIR	9479	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
113464	chr19	9913021	9913850	+	0	NA	intron (NM_058164, intron 1 of 5)	CpG	366	NM_001304347	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
191396	chr6	8059121	8059380	+	0	NA	intron (NM_001199322, intron 2 of 5)	intron (NM_001199322, intron 2 of 5)	5139	NM_201280	63915		NM_201280	ENSG00000188428	BLOC1S5	BLOS5|HPS11|MU|MUTED	biogenesis of lysosomal organelles complex 1 subunit 5	protein-coding
143714	chr20	32252121	32252650	+	0	NA	Intergenic	Intergenic	14590	NR_031726	100302183		NR_031726	ENSG00000284125	MIR1825	MIRN1825|hsa-mir-1825	microRNA 1825	ncRNA
169633	chr3	171300751	171301050	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	159505	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
184762	chr5	109945251	109945550	+	0	NA	Intergenic	MIR3|SINE|MIR	62218	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
54034	chr12	75658901	75659100	+	0	NA	Intergenic	Intergenic	-147391	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
91837	chr17	7201171	7201680	+	0	NA	intron (NR_135527, intron 10 of 20)	MER20|DNA|hAT-Charlie	3762	NM_001321077	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
134843	chr2	148654451	148654750	+	0	NA	intron (NM_015630, intron 1 of 13)	AluJr|SINE|Alu	9849	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
149024	chr21	14569901	14570180	+	0	NA	intron (NM_001256370, intron 2 of 8)	intron (NM_001256370, intron 2 of 8)	-12162	NR_046512	100874190		NR_046512	ENSG00000223662	SAMSN1-AS1	-	SAMSN1 antisense RNA 1	ncRNA
82753	chr16	21417351	21417650	+	0	NA	intron (NM_130464, intron 2 of 12)	L1ME2z|LINE|L1	7878	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
122108	chr19	48783471	48783900	+	0	NA	Intergenic	AluSz6|SINE|Alu	27344	NM_001284325	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
53378	chr12	64681271	64682100	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-59080	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
79694	chr16	1290021	1290280	+	0	NA	Intergenic	Intergenic	-19002	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
91014	chr17	2797801	2798130	+	0	NA	intron (NM_001100398, intron 1 of 23)	intron (NM_001100398, intron 1 of 23)	1527	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
136755	chr2	181311801	181312100	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	-6298	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
60046	chr13	32783971	32784130	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	127602	NR_047020	100874167		NR_047020		LINC00423	-	long intergenic non-protein coding RNA 423	ncRNA
53667	chr12	68418321	68418780	+	0	NA	Intergenic	Intergenic	32934	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
48520	chr12	9961071	9961230	+	0	NA	intron (NM_001207010, intron 1 of 6)	MER4B|LTR|ERV1	-7813	NR_135047	400002		NR_135047	ENSG00000231560	CLEC12A-AS1	-	CLEC12A antisense RNA 1	ncRNA
54817	chr12	94704371	94704730	+	0	NA	Intergenic	Intergenic	-53993	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
45651	chr11	119006221	119006680	+	0	NA	intron (NR_104051, intron 4 of 10)	AluY|SINE|Alu	-2857	NR_003040	649946		NR_003040		RPL23AP64	RPL23A_25_1182	ribosomal protein L23a pseudogene 64	pseudo
41659	chr11	66558301	66558500	+	0	NA	intron (NR_047663, intron 11 of 20)	AluJb|SINE|Alu	10206	NM_003793	8722		NM_003793	ENSG00000174080	CTSF	CATSF|CLN13	cathepsin F	protein-coding
123746	chr19	55071001	55071630	+	0	NA	Intergenic	Intergenic	-1795	NM_138412	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
73415	chr15	43081351	43081450	+	0	NA	intron (NM_174916, intron 3 of 46)	AluSp|SINE|Alu	24638	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
61748	chr13	74234901	74235730	+	0	NA	intron (NR_144451, intron 1 of 1)	intron (NR_144451, intron 1 of 1)	3871	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
155379	chr22	38307571	38307930	+	0	NA	intron (NM_152221, intron 2 of 10)	AluJb|SINE|Alu	9683	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
182980	chr5	71610001	71610230	+	0	NA	intron (NM_001363147, intron 6 of 15)	L1PA2|LINE|L1	22775	NM_022132	64087		NM_022132	ENSG00000131844	MCCC2	MCCB|MCCCbeta	methylcrotonyl-CoA carboxylase subunit 2	protein-coding
137145	chr2	191054901	191055550	+	0	NA	intron (NM_003151, intron 13 of 23)	AluY|SINE|Alu	33699	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
175165	chr4	55851851	55852450	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-1498	NM_001024924	55763		NM_018261	ENSG00000090989	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
33225	chr10	114094851	114095150	+	0	NA	Intergenic	Intergenic	51134	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
178322	chr4	145623921	145624680	+	0	NA	intron (NM_001375644, intron 1 of 6)	intron (NM_001375644, intron 1 of 6)	4915	NM_172250	166785		NM_172250	ENSG00000151611	MMAA	cblA	metabolism of cobalamin associated A	protein-coding
222439	chr8	134905501	134906400	+	0	NA	Intergenic	Intergenic	56015	NR_125427	101927845		NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA
85134	chr16	36659251	36659430	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	912788	NR_033985	400533		NR_033985	ENSG00000261122	LINC02167	-	long intergenic non-protein coding RNA 2167	ncRNA
19847	chr1	182890921	182891300	+	0	NA	Intergenic	L1M1|LINE|L1	-51519	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
171947	chr4	888221	888650	+	0	NA	intron (NM_001318134, intron 8 of 24)	intron (NM_001318134, intron 8 of 24)	43881	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
143613	chr20	31720101	31720300	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-1307	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
169734	chr3	172449621	172450250	+	0	NA	Intergenic	CpG	-1479	NM_198407	2693		NM_004122	ENSG00000121853	GHSR	GHDP|GHS-R1a|GHSR-1a	growth hormone secretagogue receptor	protein-coding
50934	chr12	49348621	49349450	+	0	NA	exon (NM_001304944, exon 3 of 4)	exon (NM_001304944, exon 3 of 4)	2147	NM_001304944	79962		NM_024902	ENSG00000178401	DNAJC22	wus	DnaJ heat shock protein family (Hsp40) member C22	protein-coding
131174	chr2	94208301	94208830	+	0	NA	promoter-TSS (NR_146105)	promoter-TSS (NR_146105)	-146	NR_146107	728034		NR_146105		BMS1P23	-	BMS1 pseudogene 23	pseudo
225837	chr9	38002571	38002730	+	0	NA	intron (NM_003028, intron 2 of 5)	intron (NM_003028, intron 2 of 5)	66577	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
208173	chr7	64686671	64687180	+	0	NA	non-coding (NR_104149, exon 3 of 3)	non-coding (NR_104149, exon 3 of 3)	7861	NR_106898	102465505		NR_106898	ENSG00000275667	MIR6839	hsa-mir-6839	microRNA 6839	ncRNA
100024	chr17	57982121	57983080	+	0	NA	intron (NM_001330393, intron 3 of 6)	intron (NM_001330393, intron 3 of 6)	5654	NM_001330393	7716		NM_007146	ENSG00000136451	VEZF1	CMD1OO|DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
193043	chr6	28542651	28543580	+	0	NA	Intergenic	tRNA-Arg-CGA|tRNA|tRNA	14784	NR_144470	2880		NM_001509	ENSG00000224586	GPX5	EGLP|GPx-5|GSHPx-5|HEL-S-75p	glutathione peroxidase 5	protein-coding
133194	chr2	113074921	113075380	+	0	NA	intron (NM_173161, intron 4 of 4)	intron (NM_173161, intron 4 of 4)	2832	NM_032556	84639		NM_032556	ENSG00000136697	IL1F10	FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2	interleukin 1 family member 10	protein-coding
23559	chr1	229340601	229340800	+	0	NA	intron (NM_145257, intron 2 of 3)	intron (NM_145257, intron 2 of 3)	2347	NM_145257	126731		NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
191431	chr6	10507321	10507800	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-13791	NM_145649	2651		NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein-coding
35799	chr11	2198551	2198650	+	0	NA	Intergenic	Intergenic	25537	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
31791	chr10	98295571	98295730	+	0	NA	Intergenic	LTR50|LTR|ERVL	-27456	NM_032211	84171		NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
142470	chr20	4160971	4161430	+	0	NA	intron (NM_175840, intron 1 of 7)	intron (NM_175840, intron 1 of 7)	12372	NM_175839	54498		NM_019025	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
199098	chr6	111671021	111671450	+	0	NA	intron (NM_001370529, intron 11 of 11)	intron (NM_001370529, intron 11 of 11)	-64961	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
224890	chr9	32385751	32385850	+	0	NA	intron (NM_002197, intron 1 of 20)	Charlie1b|DNA|hAT-Charlie	1157	NM_001362840	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
76929	chr15	78060371	78061000	+	0	NA	intron (NM_144572, intron 1 of 12)	AluSq|SINE|Alu	16967	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
200076	chr6	130133251	130133550	+	0	NA	intron (NM_001007102, intron 19 of 21)	intron (NM_001007102, intron 19 of 21)	82485	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
131620	chr2	96950851	96951680	+	0	NA	intron (NM_001122646, intron 7 of 16)	intron (NM_001122646, intron 7 of 16)	32159	NR_110209	101927053		NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
152471	chr22	20713421	20713680	+	0	NA	intron (NM_001362863, intron 46 of 53)	intron (NM_001362863, intron 46 of 53)	12436	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
22035	chr1	210360821	210361130	+	0	NA	intron (NM_018194, intron 2 of 11).2	intron (NM_018194, intron 2 of 11).2	31609	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
90343	chr17	1186901	1187600	+	0	NA	promoter-TSS (NM_001159746)	promoter-TSS (NM_001159746)	22	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
225331	chr9	34624751	34625230	+	0	NA	intron (NM_001017363, intron 2 of 6)	intron (NM_001017363, intron 2 of 6)	3096	NM_001017363	138715		NM_001017363	ENSG00000205143	ARID3C	-	AT-rich interaction domain 3C	protein-coding
231126	chr9	129834271	129835980	+	0	NA	promoter-TSS (NM_001008563)	promoter-TSS (NM_001008563)	150	NM_016520	51759		NM_016520	ENSG00000136819	C9orf78	CSU2|HCA59|HSPC220|TLS1|bA409K20.3	chromosome 9 open reading frame 78	protein-coding
73632	chr15	44665601	44665800	+	0	NA	TTS (NM_001145112)	TTS (NM_001145112)	-2038	NM_025137	80208		NM_025137	ENSG00000104133	SPG11	ALS5|CMT2X|KIAA1840	SPG11 vesicle trafficking associated, spatacsin	protein-coding
215051	chr7	152674301	152674500	+	0	NA	intron (NM_005431, intron 1 of 2)	AluSx|SINE|Alu	1741	NM_005431	7516		NM_005431	ENSG00000196584	XRCC2	FANCU|POF17|SPGF50	X-ray repair cross complementing 2	protein-coding
105550	chr17	83202321	83202780	+	0	NA	Intergenic	Intergenic	-24347	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
225004	chr9	33122201	33122700	+	0	NA	intron (NM_001378495, intron 2 of 5)	AluJb|SINE|Alu	13758	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
21003	chr1	202809471	202809630	+	0	NA	promoter-TSS (NM_001347591)	promoter-TSS (NM_001347591)	-80	NM_001314042	10765		NM_006618	ENSG00000117139	KDM5B	CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1	lysine demethylase 5B	protein-coding
96041	chr17	39449771	39449930	+	0	NA	intron (NM_004774, intron 1 of 16)	AluSp|SINE|Alu	1413	NM_004774	5469		NM_004774	ENSG00000125686	MED1	CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2	mediator complex subunit 1	protein-coding
4733	chr1	23366471	23366830	+	0	NA	intron (NM_001370652, intron 2 of 2).2	intron (NM_001370652, intron 2 of 2).2	1736	NM_030634	80818		NM_030634	ENSG00000125945	ZNF436	ZNF|Zfp46	zinc finger protein 436	protein-coding
43820	chr11	86743521	86743780	+	0	NA	Intergenic	Intergenic	-47421	NM_001293180	11098		NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	serine protease 23	protein-coding
15953	chr1	151837201	151837700	+	0	NA	promoter-TSS (NR_024237)	promoter-TSS (NR_024237)	-827	NR_024237	100132111		NR_024237		C2CD4D-AS1	-	C2CD4D and THEM5 antisense RNA 1	ncRNA
31982	chr10	100751371	100751530	+	0	NA	intron (NM_003987, intron 3 of 10)	intron (NM_003987, intron 3 of 10)	5868	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
103242	chr17	77508321	77508580	+	0	NA	Intergenic	Intergenic	-18551	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
112577	chr19	6640501	6641030	+	0	NA	Intergenic	Intergenic	29393	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
82086	chr16	14300701	14301300	+	0	NA	Intergenic	Intergenic	-1288	NR_132983	100129781		NR_132983	ENSG00000262454	MIR193BHG	HypERlnc|lincNORS	MIR193b-365a host gene	ncRNA
70265	chr14	101719071	101719880	+	0	NA	Intergenic	Intergenic	-10962	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
87070	chr16	68370821	68371680	+	0	NA	exon (NM_018667, exon 3 of 9)	exon (NM_018667, exon 3 of 9)	60136	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
195100	chr6	35601201	35603500	+	0	NA	intron (NM_001145775, intron 6 of 11)	intron (NM_001145775, intron 6 of 11)	62439	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
125207	chr2	10301201	10301400	+	0	NA	Intergenic	Intergenic	-1604	NM_002149	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
193376	chr6	30341701	30342500	+	0	NA	exon (NM_021253, exon 9 of 9).2	exon (NM_021253, exon 9 of 9).2	-3056	NM_024839	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
95338	chr17	35751471	35751830	+	0	NA	intron (NM_139285, intron 1 of 5)	AluSx1|SINE|Alu	1589	NM_139285	246176		NM_139285	ENSG00000270765	GAS2L2	CILD41|GAR17	growth arrest specific 2 like 2	protein-coding
78942	chr15	101269651	101270350	+	0	NA	TTS (NM_203472)	TTS (NM_203472)	7485	NM_018445	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
82273	chr16	15156201	15156800	+	0	NA	Intergenic	MIRc|SINE|MIR	-1472	NR_036141	100422870		NR_036141	ENSG00000265537	MIR3180-1	-	microRNA 3180-1	ncRNA
114273	chr19	11578501	11579900	+	0	NA	promoter-TSS (NM_001111036)	promoter-TSS (NM_001111036)	-225	NM_001111035	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
57393	chr12	121819621	121820280	+	0	NA	intron (NM_001353345, intron 11 of 16)	intron (NM_001353345, intron 11 of 16)	15941	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
70290	chr14	101765151	101765730	+	0	NA	intron (NM_001352915, intron 2 of 14)	intron (NM_001352915, intron 2 of 14)	3070	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
208720	chr7	73327701	73328250	+	0	NA	promoter-TSS (NM_001135211)	promoter-TSS (NM_001135211)	107	NM_178125	135892		NM_178125	ENSG00000146755	TRIM50	TRIM50A	tripartite motif containing 50	protein-coding
86480	chr16	66983851	66984430	+	0	NA	Intergenic	Intergenic	-4449	NM_173815	283848		NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
134221	chr2	134692521	134692800	+	0	NA	intron (NM_030923, intron 2 of 7)	MLT1A|LTR|ERVL-MaLR	26340	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
62724	chr13	105139301	105140350	+	0	NA	Intergenic	Intergenic	-326042	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
7923	chr1	37491171	37491330	+	0	NA	non-coding (NR_073090, exon 9 of 9)	non-coding (NR_073090, exon 9 of 9)	9744	NR_049844	100847010		NR_049844	ENSG00000263675	MIR5581	-	microRNA 5581	ncRNA
233944	chrX	2504401	2504800	+	0	NA	Intergenic	AluSp|SINE|Alu	-3624	NM_145177	207063		NM_145177	ENSG00000169084	DHRSX	CXorf11|DHRS5X|DHRS5Y|DHRSXY|DHRSY|SDR46C1|SDR7C6	dehydrogenase/reductase X-linked	protein-coding
163459	chr3	50610301	50610750	+	0	NA	5' UTR (NM_013324, exon 2 of 4)	5' UTR (NM_013324, exon 2 of 4)	1249	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
85515	chr16	50776321	50776580	+	0	NA	intron (NR_166071, intron 6 of 16)	intron (NR_166071, intron 6 of 16)	-30222	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
112320	chr19	5898321	5898580	+	0	NA	intron (NM_175614, intron 1 of 3)	intron (NM_175614, intron 1 of 3)	5340	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
63681	chr14	21081701	21081900	+	0	NA	exon (NM_018071, exon 14 of 24)	exon (NM_018071, exon 14 of 24)	-10928	NM_001282211	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
233022	chr9	137021651	137023030	+	0	NA	intron (NM_212533, intron 6 of 48)	intron (NM_212533, intron 6 of 48)	-5124	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
11770	chr1	92461501	92461980	+	0	NA	Intergenic	MIRb|SINE|MIR	22214	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
48869	chr12	12445121	12445780	+	0	NA	intron (NM_058169, intron 3 of 3)	L1ME4a|LINE|L1	88372	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
119961	chr19	41886921	41888460	+	0	NA	intron (NM_199002, intron 1 of 28)	MSR1|Satellite|Satellite	3247	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
155346	chr22	38233451	38233950	+	0	NA	intron (NM_001195071, intron 3 of 8)	intron (NM_001195071, intron 3 of 8)	-8980	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
18973	chr1	169090101	169090750	+	0	NA	Intergenic	Intergenic	-3420	NR_104091	101978719		NR_104091	ENSG00000203601	LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
161400	chr3	41218251	41218350	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	18795	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
140682	chr2	234137021	234137690	+	0	NA	Intergenic	AluSx|SINE|Alu	86653	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
114540	chr19	12865751	12866450	+	0	NA	exon (NM_014975, exon 17 of 26)	exon (NM_014975, exon 17 of 26)	13840	NR_106852	102466196		NR_106852	ENSG00000276181	MIR6794	hsa-mir-6794	microRNA 6794	ncRNA
204041	chr7	1937351	1937900	+	0	NA	intron (NM_001304524, intron 14 of 16)	intron (NM_001304524, intron 14 of 16)	2946	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
5777	chr1	26527321	26527800	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2201	NM_002953	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
123779	chr19	55111601	55112100	+	0	NA	intron (NM_017607, intron 3 of 21)	MIRb|SINE|MIR	5787	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
129664	chr2	70260251	70260750	+	0	NA	intron (NM_016297, intron 2 of 5)	AluJb|SINE|Alu	2363	NM_016297	51449		NM_016297	ENSG00000116005	PCYOX1	PCL1	prenylcysteine oxidase 1	protein-coding
227872	chr9	93671601	93671800	+	0	NA	intron (NM_005392, intron 17 of 21)	intron (NM_005392, intron 17 of 21)	76859	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
2108	chr1	8097251	8097580	+	0	NA	Intergenic	Intergenic	-71106	NM_018948	54206		NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
126717	chr2	30177551	30178450	+	0	NA	Intergenic	Intergenic	-9434	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
126689	chr2	30144851	30145300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1932	NM_001127401	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
198407	chr6	105982471	105983080	+	0	NA	Intergenic	Intergenic	-103561	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
36153	chr11	3142051	3142350	+	0	NA	intron (NM_145638, intron 1 of 20)	AluSx1|SINE|Alu	23110	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
25661	chr10	8352651	8352950	+	0	NA	Intergenic	UCON29|DNA|PiggyBac?	-84495	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
21669	chr1	206700171	206700500	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	15430	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
119855	chr19	41426471	41426850	+	0	NA	exon (NM_198540, exon 3 of 3)	exon (NM_198540, exon 3 of 3)	1333	NM_001385648	374907		NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
237482	chrX	119790901	119792450	+	0	NA	promoter-TSS (NM_001000)	promoter-TSS (NM_001000)	-45	NM_001000	6170		NM_001000	ENSG00000198918	RPL39	L39|RPL39P42|RPL39_23_1806|eL39	ribosomal protein L39	protein-coding
133929	chr2	130392501	130392700	+	0	NA	Intergenic	AluSx|SINE|Alu	35946	NR_046258	100216479		NR_046258		FAR2P2	-	fatty acyl-CoA reductase 2 pseudogene 2	pseudo
203927	chr7	1532401	1533360	+	0	NA	non-coding (NR_149036, exon 1 of 1)	non-coding (NR_149036, exon 1 of 1)	2000	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
3975	chr1	18858121	18858380	+	0	NA	intron (NM_152232, intron 1 of 5)	intron (NM_152232, intron 1 of 5)	1410	NM_152232	80834		NM_152232	ENSG00000179002	TAS1R2	GPR71|T1R2|TR2	taste 1 receptor member 2	protein-coding
199066	chr6	111608151	111608250	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1926	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
89539	chr16	89196671	89196930	+	0	NA	intron (NM_001384773, intron 8 of 8)	AluSc5|SINE|Alu	3737	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
147981	chr20	62992121	62992380	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	14714	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
115732	chr19	16259271	16260050	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	61749	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
113008	chr19	7911551	7912150	+	0	NA	intron (NM_145185, intron 9 of 10)	intron (NM_145185, intron 9 of 10)	-2980	NM_001195259	100507588		NM_001195259	ENSG00000260001	TGFBR3L	GEMP|TGFR-3L	transforming growth factor beta receptor 3 like	protein-coding
126560	chr2	28623771	28624280	+	0	NA	intron (NM_153021, intron 49 of 57)	AluJb|SINE|Alu	57668	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
129763	chr2	71041601	71042180	+	0	NA	Intergenic	SATR1|Satellite|Satellite	17815	NR_002185	79315		NR_002185	ENSG00000290930	OR7E91P	-	olfactory receptor family 7 subfamily E member 91 pseudogene	pseudo
157980	chr22	49829451	49830130	+	0	NA	Intergenic	Intergenic	-1917	NM_001304808	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
89768	chr16	89462651	89463580	+	0	NA	intron (NM_001256182, intron 1 of 13)	SVA_D|Retroposon|SVA	27446	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
210874	chr7	101146821	101147480	+	0	NA	Intergenic	L3|LINE|CR1	-7326	NM_001283	1174		NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A	adaptor related protein complex 1 subunit sigma 1	protein-coding
109682	chr19	1034951	1035380	+	0	NA	intron (NM_201277, intron 4 of 5)	CpG	-4942	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
144447	chr20	35506721	35507330	+	0	NA	intron (NM_007186, intron 30 of 34)	intron (NM_007186, intron 30 of 34)	22627	NR_026933	140873		NM_080828	ENSG00000125975	C20orf173	dJ477O4.4	chromosome 20 open reading frame 173	protein-coding
165131	chr3	71724571	71725800	+	0	NA	intron (NM_173359, intron 2 of 7)	CpG	217	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
179803	chr5	396021	397150	+	0	NA	intron (NR_165159, intron 6 of 13)	intron (NR_165159, intron 6 of 13)	46575	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
16015	chr1	152050421	152050680	+	0	NA	Intergenic	Intergenic	-13546	NM_005620	6282		NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
62212	chr13	98475921	98477150	+	0	NA	intron (NM_001286649, intron 2 of 9)	intron (NM_001286649, intron 2 of 9)	45590	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
18062	chr1	160636351	160636850	+	0	NA	intron (NR_104400, intron 2 of 4)	intron (NR_104400, intron 2 of 4)	10444	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
104480	chr17	81125801	81126100	+	0	NA	promoter-TSS (NR_029897)	promoter-TSS (NR_029897)	-1	NR_029897	442906		NR_029897	ENSG00000283604	MIR338	MIRN338|hsa-mir-338|mir-338	microRNA 338	ncRNA
154284	chr22	31663721	31664330	+	0	NA	Intergenic	AluJo|SINE|Alu	-1461	NM_001326421	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
17186	chr1	156236101	156236880	+	0	NA	intron (NM_001199661, intron 4 of 6)	intron (NM_001199661, intron 4 of 6)	-5694	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
112599	chr19	6723551	6723850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3050	NM_000064	718		NM_000064	ENSG00000125730	C3	AHUS5|ARMD9|ASP|C3a|C3b|CPAMD1|HEL-S-62p	complement C3	protein-coding
152519	chr22	20963001	20963400	+	0	NA	intron (NR_110537, intron 1 of 1)	intron (NR_110537, intron 1 of 1)	-1972	NM_001018060	150209		NM_144704	ENSG00000183773	AIFM3	AIFL	apoptosis inducing factor mitochondria associated 3	protein-coding
171968	chr4	907071	907230	+	0	NA	intron (NM_001318134, intron 1 of 24)	intron (NM_001318134, intron 1 of 24)	25166	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
22258	chr1	212635201	212635680	+	0	NA	Intergenic	Intergenic	10966	NM_153606	149647		NM_153606	ENSG00000162771	GARIN4	FAM71A|GARI-L4|GARIL4	golgi associated RAB2 interactor family member 4	protein-coding
12170	chr1	100355871	100356330	+	0	NA	intron (NM_001319210, intron 2 of 16)	L2c|LINE|L2	3594	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
239516	chrY	56833071	56833580	+	0	NA	Intergenic	Intergenic	-120930	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
148713	chr21	6552071	6552230	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-8541	NM_000394	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
50250	chr12	46251501	46251830	+	0	NA	intron (NM_001077484, intron 1 of 16)	L1PA6|LINE|L1	14851	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
2031	chr1	7682171	7682530	+	0	NA	intron (NM_001349613, intron 1 of 11)	intron (NM_001349613, intron 1 of 11)	2262	NM_001349613	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
4902	chr1	23810801	23811350	+	0	NA	intron (NM_000191, intron 5 of 8)	intron (NM_000191, intron 5 of 8)	-10321	NM_001008216	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
118463	chr19	35881951	35882700	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	13751	NM_001024807	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
77353	chr15	82649451	82649750	+	0	NA	promoter-TSS (NM_001365246)	promoter-TSS (NM_001365246)	-805	NM_001365246	64506		NM_030594	ENSG00000214575	CPEB1	CPE-BP1|CPEB|CPEB-1|h-CPEB|hCPEB-1	cytoplasmic polyadenylation element binding protein 1	protein-coding
9547	chr1	51518601	51519650	+	0	NA	intron (NM_001981, intron 1 of 24)	CpG	141	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
180715	chr5	25189571	25189830	+	0	NA	intron (NR_147006, intron 1 of 4)	intron (NR_147006, intron 1 of 4)	956	NR_147006	105374694		NR_147006		LINC02228	HIKER	long intergenic non-protein coding RNA 2228	ncRNA
128646	chr2	61425021	61425550	+	0	NA	intron (NM_014709, intron 1 of 79)	L1M1|LINE|L1	-7908	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
91638	chr17	5424671	5424830	+	0	NA	intron (NM_001160246, intron 3 of 3)	MIR|SINE|MIR	-5011	NM_001320653	4927		NM_002532	ENSG00000108559	NUP88	FADS4	nucleoporin 88	protein-coding
228140	chr9	96797371	96797530	+	0	NA	Intergenic	L1PA3|LINE|L1	-19321	NM_014930	22869		NM_014930	ENSG00000081386	ZNF510	-	zinc finger protein 510	protein-coding
211872	chr7	111041671	111041830	+	0	NA	intron (NM_032549, intron 3 of 5)	L2a|LINE|L2	-49256	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
143155	chr20	24027151	24027930	+	0	NA	Intergenic	Intergenic	-38761	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
141783	chr2	242181671	242182300	+	0	NA	Intergenic	TAR1|Satellite|telo	93352	NR_130699	728323		NR_024437		LINC01881	-	long intergenic non-protein coding RNA 1881	ncRNA
122824	chr19	50406621	50406880	+	0	NA	intron (NR_046402, intron 12 of 25)	intron (NR_046402, intron 12 of 25)	7898	NM_001308632	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
74623	chr15	60694071	60694430	+	0	NA	intron (NM_134261, intron 1 of 10)	MIRc|SINE|MIR	12681	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
185193	chr5	119384771	119385730	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	29231	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
47478	chr12	3907221	3907680	+	0	NA	Intergenic	Intergenic	-34002	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
10557	chr1	67162951	67163250	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	-3354	NM_144701	149233		NM_144701	ENSG00000162594	IL23R	PSORS7	interleukin 23 receptor	protein-coding
19648	chr1	180233301	180233850	+	0	NA	intron (NM_033343, intron 1 of 5)	CpG-2007	3311	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
148614	chr21	5502071	5502650	+	0	NA	Intergenic	Intergenic	-51277	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
154330	chr22	32146971	32147280	+	0	NA	Intergenic	MER11C|LTR|ERVK	12178	NM_001010859	150297		NM_001010859	ENSG00000205856	C22orf42	dJ90G24.6	chromosome 22 open reading frame 42	protein-coding
136114	chr2	173939621	173940600	+	0	NA	intron (NM_001172712, intron 4 of 6)	AluSz6|SINE|Alu	23770	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
198044	chr6	90186901	90188400	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	109193	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
169082	chr3	153768621	153769220	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-6394	NR_146713	105374165		NR_146713		LINC02006	-	long intergenic non-protein coding RNA 2006	ncRNA
173949	chr4	25865101	25865980	+	0	NA	Intergenic	Intergenic	-1974	NM_001297592	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
115811	chr19	16446171	16446330	+	0	NA	intron (NM_021235, intron 1 of 22)	intron (NM_021235, intron 1 of 22)	25720	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
196728	chr6	45293001	45293700	+	0	NA	intron (NM_001350329, intron 2 of 10)	L1PB1|LINE|L1	-34967	NM_001015051	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
203174	chr6	167114071	167114830	+	0	NA	intron (NM_004367, intron 1 of 2)	intron (NM_004367, intron 1 of 2)	2643	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
155891	chr22	39526351	39527550	+	0	NA	Intergenic	Intergenic	5798	NR_130151	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
220370	chr8	99884751	99885450	+	0	NA	intron (NM_004374, intron 3 of 3)	L1MB2|LINE|L1	8607	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
49253	chr12	19451351	19452200	+	0	NA	intron (NM_001267043, intron 1 of 8)	AluJb|SINE|Alu	11176	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
53868	chr12	70246351	70246850	+	0	NA	intron (NR_037615, intron 1 of 16)	intron (NR_037615, intron 1 of 16)	2886	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
54618	chr12	92592121	92592730	+	0	NA	Intergenic	Intergenic	-110418	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
220845	chr8	103072971	103073130	+	0	NA	TTS (NM_001695)	TTS (NM_001695)	-47982	NR_145429	379034		NR_145429		LINC01181	-	long intergenic non-protein coding RNA 1181	ncRNA
115536	chr19	15460651	15460950	+	0	NA	intron (NM_022904, intron 5 of 17)	FLAM_A|SINE|Alu	3744	NM_022904	64926		NM_022904	ENSG00000105122	RASAL3	-	RAS protein activator like 3	protein-coding
128990	chr2	64747451	64748100	+	0	NA	Intergenic	AluSz|SINE|Alu	-93862	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
33136	chr10	112374601	112375500	+	0	NA	promoter-TSS (NM_203380)	promoter-TSS (NM_203380)	-215	NM_203380	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
46088	chr11	122840251	122840780	+	0	NA	intron (NM_019604, intron 1 of 9)	intron (NM_019604, intron 1 of 9)	2015	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
144004	chr20	33140001	33140700	+	0	NA	Intergenic	Intergenic	-21420	NM_001319164	140683		NM_080574	ENSG00000131050	BPIFA2	C20orf70|PSP|SPLUNC2|bA49G10.1	BPI fold containing family A member 2	protein-coding
206183	chr7	28142621	28143080	+	0	NA	intron (NM_175061, intron 1 of 4)	MER91A|DNA|hAT-Tip100	-37607	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
141684	chr2	241807251	241808030	+	0	NA	Intergenic	Intergenic	-1553	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
14245	chr1	143239201	143239680	+	0	NA	Intergenic	Intergenic	183152	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
130096	chr2	74513801	74514400	+	0	NA	promoter-TSS (NM_016170)	promoter-TSS (NM_016170)	-350	NM_016170	3196		NM_001534	ENSG00000115297	TLX2	HOX11L1|NCX	T cell leukemia homeobox 2	protein-coding
145890	chr20	45954751	45954850	+	0	NA	intron (NM_022095, intron 17 of 27)	AluJb|SINE|Alu	17403	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
144331	chr20	34986501	34986700	+	0	NA	intron (NM_020884, intron 14 of 44)	intron (NM_020884, intron 14 of 44)	-3776	NR_030223	574501		NR_030223	ENSG00000207635	MIR499A	MIR499|MIRN499|hsa-mir-499a|mir-499a	microRNA 499a	ncRNA
53161	chr12	57940751	57942280	+	0	NA	promoter-TSS (NM_033276)	promoter-TSS (NM_033276)	-52	NM_001320409	91419		NM_033276	ENSG00000166896	ATP23	KUB3|XRCC6BP1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding
45157	chr11	117204071	117204230	+	0	NA	TTS (NM_004716)	TTS (NM_004716)	-2236	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
59215	chr13	23375071	23376430	+	0	NA	promoter-TSS (NM_001278055)	promoter-TSS (NM_001278055)	-242	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
170276	chr3	184304971	184305130	+	0	NA	intron (NM_001278709, intron 10 of 18)	intron (NM_001278709, intron 10 of 18)	4469	NM_001278709	5708		NM_002808	ENSG00000175166	PSMD2	P97|RPN1|S2|TRAP2	proteasome 26S subunit ubiquitin receptor, non-ATPase 2	protein-coding
69409	chr14	94056571	94057500	+	0	NA	intron (NM_020414, intron 6 of 8).2	MIR|SINE|MIR	24167	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
191223	chr6	5705371	5705530	+	0	NA	intron (NM_001374875, intron 6 of 6)	intron (NM_001374875, intron 6 of 6)	-10178	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
21361	chr1	204977471	204977630	+	0	NA	TTS (NM_001005389)	TTS (NM_001005389)	33324	NM_001160331	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
25369	chr10	6424951	6425250	+	0	NA	intron (NM_001323267, intron 17 of 17)	intron (NM_001323267, intron 17 of 17)	74784	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
160170	chr3	23206571	23206730	+	0	NA	intron (NM_001370228, intron 1 of 3)	intron (NM_001370228, intron 1 of 3)	3323	NM_001370228	7325		NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
148136	chr20	63477101	63477300	+	0	NA	Intergenic	Intergenic	-4545	NM_172108	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
48177	chr12	7989751	7990700	+	0	NA	Intergenic	Intergenic	-42491	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
136636	chr2	179239271	179239500	+	0	NA	intron (NM_178123, intron 1 of 17)	intron (NM_178123, intron 1 of 17)	25447	NM_178123	91404		NM_178123	ENSG00000187231	SESTD1	SOLO	SEC14 and spectrin domain containing 1	protein-coding
220527	chr8	100685901	100686100	+	0	NA	Intergenic	L1MC4|LINE|L1	17024	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
182687	chr5	67809751	67809850	+	0	NA	Intergenic	L1MEd|LINE|L1	16587	NR_130779	101928858		NR_130779	ENSG00000249364	LINC02997	-	long intergenic non-protein coding RNA 2997	ncRNA
214394	chr7	149788371	149788530	+	0	NA	non-coding (NR_163594, exon 25 of 103)	non-coding (NR_163594, exon 25 of 103)	12408	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
191347	chr6	7136951	7138130	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	29579	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
236130	chrX	57905221	57905780	+	0	NA	TTS (NM_007156)	TTS (NM_007156)	4958	NM_007156	7789		NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger X-linked duplicated A	protein-coding
34588	chr10	133251501	133251700	+	0	NA	Intergenic	Intergenic	-3715	NR_108079	101927671		NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
156008	chr22	39937771	39939330	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	-8267	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
32191	chr10	101694901	101695950	+	0	NA	promoter-TSS (NM_001323541)	promoter-TSS (NM_001323541)	-130	NM_001323541	6468		NM_022039	ENSG00000107829	FBXW4	DAC|FBW4|FBWD4|SHFM3|SHSF3	F-box and WD repeat domain containing 4	protein-coding
222849	chr8	142621071	142621230	+	0	NA	Intergenic	L2c|LINE|L2	-6671	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
213725	chr7	140343171	140343330	+	0	NA	intron (NM_001363378, intron 9 of 10)	intron (NM_001363378, intron 9 of 10)	55280	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
60274	chr13	40615171	40616000	+	0	NA	intron (NM_002015, intron 1 of 2)	L2a|LINE|L2	51056	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
34312	chr10	132142421	132143080	+	0	NA	intron (NM_001323090, intron 11 of 23)	intron (NM_001323090, intron 11 of 23)	-44198	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
130068	chr2	74473971	74474130	+	0	NA	3' UTR (NM_032779, exon 9 of 9)	3' UTR (NM_032779, exon 9 of 9)	-1370	NM_053050	116540		NM_053050	ENSG00000204822	MRPL53	L53MT|mL53	mitochondrial ribosomal protein L53	protein-coding
94211	chr17	28602471	28603330	+	0	NA	intron (NR_040012, intron 2 of 2)	AluSg|SINE|Alu	3767	NR_040012	100506436		NR_040012		SPAG5-AS1	-	SPAG5 antisense RNA 1	ncRNA
77634	chr15	85463221	85463700	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	82857	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
203402	chr7	29321	29900	+	0	NA	Intergenic	MER4A1_|LTR|ERV1	119828	NR_134325	102723672		NR_134325		LINC03015	-	long intergenic non-protein coding RNA 3015	ncRNA
11934	chr1	93716801	93717200	+	0	NA	intron (NM_001261408, intron 2 of 13)	MLT1H|LTR|ERVL-MaLR	-35163	NM_003567	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
32898	chr10	110165251	110165350	+	0	NA	Intergenic	MIRb|SINE|MIR	-13320	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
219015	chr8	63220001	63220400	+	0	NA	Intergenic	L2b|LINE|L2	51197	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
199232	chr6	111821271	111821630	+	0	NA	intron (NM_002037, intron 2 of 13)	L1PA5|LINE|L1	51621	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
80723	chr16	3099871	3100530	+	0	NA	promoter-TSS (NM_001282415)	promoter-TSS (NM_001282415)	-906	NM_001365273	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
171640	chr3	197602201	197602400	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	25581	NR_003266	220729		NR_003266	ENSG00000291091	SDHAP4	-	SDHA pseudogene 4	pseudo
225447	chr9	35106601	35107000	+	0	NA	intron (NR_134455, intron 5 of 9)	intron (NR_134455, intron 5 of 9)	-3605	NM_001287031	30968		NM_013442	ENSG00000165283	STOML2	HSPC108|SLP-2	stomatin like 2	protein-coding
27049	chr10	27115821	27116080	+	0	NA	intron (NM_001253866, intron 16 of 17)	intron (NM_001253866, intron 16 of 17)	-15456	NM_001256053	22852		NM_014915	ENSG00000107890	ANKRD26	THC2|bA145E8.1	ankyrin repeat domain containing 26	protein-coding
198922	chr6	110234751	110234850	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	54373	NM_015891	51362		NM_015891	ENSG00000168438	CDC40	EHB3|PCH15|PRP17|PRPF17	cell division cycle 40	protein-coding
31266	chr10	92214971	92215130	+	0	NA	intron (NM_014912, intron 2 of 9)	AluSz6|SINE|Alu	28229	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
185342	chr5	126855271	126855630	+	0	NA	Intergenic	Intergenic	78314	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
171996	chr4	953401	953800	+	0	NA	intron (NM_032326, intron 8 of 10)	intron (NM_032326, intron 8 of 10)	19969	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
63389	chr13	114063571	114063730	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	14305	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
43075	chr11	74702351	74703080	+	0	NA	intron (NM_015424, intron 9 of 11)	intron (NM_015424, intron 9 of 11)	8652	NM_001304417	25884		NM_015424	ENSG00000054938	CHRDL2	BNF1|CHL2	chordin like 2	protein-coding
150515	chr21	42894701	42895300	+	0	NA	intron (NM_021075, intron 1 of 3)	intron (NM_021075, intron 1 of 3)	1691	NM_001001503	4731		NM_021075	ENSG00000160194	NDUFV3	CI-10k|CI-9KD	NADH:ubiquinone oxidoreductase subunit V3	protein-coding
110595	chr19	2173421	2173880	+	0	NA	intron (NM_032482, intron 1 of 27)	intron (NM_032482, intron 1 of 27)	9717	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
192258	chr6	20291671	20292330	+	0	NA	Intergenic	Intergenic	-79531	NM_001080480	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
99944	chr17	57284251	57285750	+	0	NA	intron (NM_170721, intron 4 of 9)	intron (NM_170721, intron 4 of 9)	27981	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
87825	chr16	75624951	75625050	+	0	NA	Intergenic	L2|LINE|L2	-1719	NM_001324448	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
55239	chr12	101873521	101874580	+	0	NA	Intergenic	AluY|SINE|Alu	-3530	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
51231	chr12	50773721	50773980	+	0	NA	intron (NM_005171, intron 1 of 6)	AluSx1|SINE|Alu	9749	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
93759	chr17	19992301	19993330	+	0	NA	Intergenic	AluSx3|SINE|Alu	-14959	NM_001330152	11216		NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A-kinase anchoring protein 10	protein-coding
80188	chr16	2132921	2134000	+	0	NA	TTS (NR_039741)	TTS (NR_039741)	341	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
173588	chr4	10403771	10404000	+	0	NA	Intergenic	Intergenic	53541	NM_053042	85460		NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
61124	chr13	48504421	48506980	+	0	NA	intron (NR_147985, intron 6 of 11)	intron (NR_147985, intron 6 of 11)	27380	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
182719	chr5	68252551	68253100	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-35694	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
212188	chr7	117014701	117015030	+	0	NA	promoter-TSS (NM_001369602)	promoter-TSS (NM_001369602)	-47	NM_001369602	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
174241	chr4	37928901	37929300	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	-31298	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
30449	chr10	79076751	79077050	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	7934	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
76205	chr15	73696621	73697750	+	0	NA	intron (NM_001329628, intron 1 of 7)	intron (NM_001329628, intron 1 of 7)	12415	NM_001329628	80381		NM_025240	ENSG00000103855	CD276	4Ig-B7-H3|B7-H3|B7H3|B7RP-2	CD276 molecule	protein-coding
80881	chr16	3637171	3637730	+	0	NA	Intergenic	L1MCa|LINE|L1	-15489	NM_005223	1773		NM_005223	ENSG00000213918	DNASE1	DNL1|DRNI	deoxyribonuclease 1	protein-coding
55988	chr12	110285701	110286230	+	0	NA	intron (NM_170665, intron 3 of 19)	AluSq|SINE|Alu	4718	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
9845	chr1	54230151	54230250	+	0	NA	intron (NM_145716, intron 14 of 17)	intron (NM_145716, intron 14 of 17)	-6243	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
168340	chr3	141878151	141878400	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	1632	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
146288	chr20	49127821	49128280	+	0	NA	intron (NM_001322927, intron 4 of 11)	AluSp|SINE|Alu	60284	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
123797	chr19	55156021	55157050	+	0	NA	intron (NM_000363, intron 4 of 7)	CpG-15153	1197	NM_000363	7137		NM_000363	ENSG00000129991	TNNI3	CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI	troponin I3, cardiac type	protein-coding
135035	chr2	156322201	156323230	+	0	NA	Intergenic	Intergenic	10006	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
168875	chr3	152300471	152300950	+	0	NA	intron (NM_207295, intron 2 of 8)	intron (NM_207295, intron 2 of 8)	1696	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
134433	chr2	143133171	143133530	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	3931	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
59333	chr13	24512101	24513080	+	0	NA	intron (NM_006437, intron 1 of 33)	CpG	188	NM_006437	143		NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	poly(ADP-ribose) polymerase family member 4	protein-coding
215287	chr7	157250251	157250840	+	0	NA	intron (NM_014671, intron 19 of 22)	AluJo|SINE|Alu	-86459	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
160723	chr3	32434471	32434630	+	0	NA	intron (NM_138410, intron 1 of 4)	AluJr|SINE|Alu	42697	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
170249	chr3	184234201	184234700	+	0	NA	intron (NM_138345, intron 5 of 18)	intron (NM_138345, intron 5 of 18)	1034	NM_001320373	90113		NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
93279	chr17	18106571	18106730	+	0	NA	intron (NM_001388, intron 12 of 12)	intron (NM_001388, intron 12 of 12)	-2106	NM_016239	51168		NM_016239	ENSG00000091536	MYO15A	DFNB3|MYO15	myosin XVA	protein-coding
42268	chr11	68213401	68215050	+	0	NA	promoter-TSS (NM_001300908)	promoter-TSS (NM_001300908)	-577	NM_001300909	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
37927	chr11	34215071	34215230	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	109521	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
216731	chr8	22443301	22445030	+	0	NA	intron (NM_005605, intron 1 of 13)	AluSq2|SINE|Alu	3087	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
109033	chr18	79734421	79734880	+	0	NA	intron (NM_001318511, intron 11 of 11)	intron (NM_001318511, intron 11 of 11)	53220	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
69670	chr14	98099321	98099580	+	0	NA	Intergenic	Intergenic	-121326	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
121777	chr19	47773951	47774250	+	0	NA	Intergenic	Intergenic	-4603	NM_003009	6415		NM_003009	ENSG00000178980	SELENOW	SEPW1|selW	selenoprotein W	protein-coding
144468	chr20	35603401	35603900	+	0	NA	intron (NR_119376, intron 7 of 42)	intron (NR_119376, intron 7 of 42)	3912	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
114718	chr19	13167291	13168230	+	0	NA	Intergenic	Intergenic	17349	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
154798	chr22	36856321	36856980	+	0	NA	intron (NR_147197, intron 1 of 1)	CpG	-4356	NM_013416	4689		NM_000631	ENSG00000100365	NCF4	CGD3|NCF|P40PHOX|SH3PXD4	neutrophil cytosolic factor 4	protein-coding
73176	chr15	41491071	41491330	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2674	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
33909	chr10	124593851	124593950	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-110128	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
24427	chr1	243525371	243525530	+	0	NA	intron (NM_005465, intron 12 of 13)	L1MEb|LINE|L1	179274	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
7729	chr1	36124301	36124500	+	0	NA	intron (NM_001294347, intron 1 of 3)	intron (NM_001294347, intron 1 of 3)	822	NM_005202	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
174823	chr4	48242601	48242800	+	0	NA	intron (NM_003215, intron 1 of 17)	intron (NM_003215, intron 1 of 17)	27138	NM_003215	7006		NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
8007	chr1	38006371	38006850	+	0	NA	Intergenic	Intergenic	-1096	NM_001243878	2275		NM_004468	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
81153	chr16	4413951	4415300	+	0	NA	intron (NM_001201479, intron 1 of 30)	intron (NM_001201479, intron 1 of 30)	1272	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
184566	chr5	102779571	102779730	+	0	NA	intron (NM_001364588, intron 1 of 24)	MLT2A1|LTR|ERVL	24345	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
130172	chr2	78330251	78330350	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-39569	NR_110288	101927967		NR_110288		LOC101927967	-	uncharacterized LOC101927967	ncRNA
63187	chr13	113741871	113743030	+	0	NA	Intergenic	Intergenic	8639	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
173976	chr4	26130301	26130500	+	0	NA	Intergenic	Intergenic	-33058	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
101022	chr17	64778301	64779300	+	0	NA	non-coding (NR_027487, exon 3 of 3)	non-coding (NR_027487, exon 3 of 3)	-1959	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
195157	chr6	35733151	35734150	+	0	NA	intron (NR_027117, intron 4 of 9)	AluSg|SINE|Alu	3297	NR_027117	285847		NR_027117		LOC285847	-	uncharacterized LOC285847	ncRNA
187519	chr5	142426121	142426580	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	101057	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
125250	chr2	10410401	10410600	+	0	NA	intron (NM_134421, intron 3 of 5)	intron (NM_134421, intron 3 of 5)	36349	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
28696	chr10	60942751	60943080	+	0	NA	intron (NM_001350907, intron 2 of 12)	intron (NM_001350907, intron 2 of 12)	1270	NM_001350909	9886		NM_014836	ENSG00000072422	RHOBTB1	-	Rho related BTB domain containing 1	protein-coding
140033	chr2	231161301	231161500	+	0	NA	non-coding (NR_034059, exon 19 of 24)	non-coding (NR_034059, exon 19 of 24)	-36358	NM_001320758	3357		NM_000867	ENSG00000135914	HTR2B	5-HT(2B)|5-HT-2B|5-HT2B	5-hydroxytryptamine receptor 2B	protein-coding
40330	chr11	63915901	63916550	+	0	NA	intron (NM_173587, intron 1 of 11)	intron (NM_173587, intron 1 of 11)	939	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
191841	chr6	15184251	15184580	+	0	NA	Intergenic	Intergenic	-61654	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
138342	chr2	203867571	203868200	+	0	NA	5' UTR (NM_005214, exon 1 of 4)	5' UTR (NM_005214, exon 1 of 4)	114	NM_001037631	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
123542	chr19	54363971	54364230	+	0	NA	intron (NM_001289027, intron 1 of 8).3	intron (NM_001289027, intron 1 of 8).3	831	NR_110279	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
177125	chr4	108103921	108104180	+	0	NA	intron (NM_016269, intron 3 of 11)	L1MB7|LINE|L1	62747	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
142335	chr20	3681651	3682500	+	0	NA	promoter-TSS (NM_001282447)	promoter-TSS (NM_001282447)	-65	NM_025220	80332		NM_025220	ENSG00000149451	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
4939	chr1	23959601	23961400	+	0	NA	intron (NM_017761, intron 1 of 2)	intron (NM_017761, intron 1 of 2)	672	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
44182	chr11	96253471	96253630	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-87888	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
29263	chr10	69129571	69129730	+	0	NA	intron (NM_001318946, intron 1 of 7)	AluSx3|SINE|Alu	5472	NM_001318944	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
17208	chr1	156261821	156262080	+	0	NA	intron (NM_001323616, intron 14 of 22)	AluJb|SINE|Alu	-13833	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
160624	chr3	31531751	31534180	+	0	NA	promoter-TSS (NM_178862)	promoter-TSS (NM_178862)	40	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
235509	chrX	47188121	47188580	+	0	NA	Intergenic	L1ME2|LINE|L1	-2497	NM_153280	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
128679	chr2	61479371	61479730	+	0	NA	intron (NM_003400, intron 24 of 24)	L1MA3|LINE|L1	-8463	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
62148	chr13	96994171	96994330	+	0	NA	intron (NM_001346195, intron 1 of 3)	CpG	226	NM_001346194	27199		NM_080818	ENSG00000165621	OXGR1	CAON2|GPR80|GPR99|P2RY15|P2Y15|aKGR	oxoglutarate receptor 1	protein-coding
105507	chr17	83103021	83103880	+	0	NA	Intergenic	CpG	22304	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
189691	chr5	176414451	176415230	+	0	NA	intron (NM_007097, intron 1 of 5)	L2c|LINE|L2	1699	NM_007097	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
115084	chr19	14220351	14220730	+	0	NA	Intergenic	AluSz|SINE|Alu	-14371	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
90384	chr17	1270471	1271430	+	0	NA	exon (NM_001164405, exon 1 of 1)	exon (NM_001164405, exon 1 of 1)	506	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
8497	chr1	40844851	40845600	+	0	NA	Intergenic	MamRep564|Unknown|Unknown	17138	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
181152	chr5	38922021	38922400	+	0	NA	intron (NM_001323505, intron 12 of 17)	intron (NM_001323505, intron 12 of 17)	76198	NM_003999	9180		NM_003999	ENSG00000145623	OSMR	IL-31R-beta|IL-31RB|OSMRB|OSMRbeta|PLCA1	oncostatin M receptor	protein-coding
68085	chr14	75280601	75281900	+	0	NA	exon (NM_005252, exon 4 of 4)	exon (NM_005252, exon 4 of 4)	2422	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
48379	chr12	9468071	9468450	+	0	NA	intron (NR_153413, intron 2 of 45)	Charlie9|DNA|hAT-Charlie	19973	NR_153413	408186		NR_153413		LOC408186	OVOS|OVOS1	alpha-2-macroglobulin like 1 pseudogene	pseudo
131927	chr2	98913271	98913430	+	0	NA	intron (NM_207362, intron 1 of 9)	L2c|LINE|L2	22875	NM_207362	343990		NM_207362	ENSG00000196872	CRACDL	C2orf55|KIAA1211L	CRACD like	protein-coding
201929	chr6	151413401	151414190	+	0	NA	intron (NM_001271937, intron 9 of 10)	intron (NM_001271937, intron 9 of 10)	-22236	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
188035	chr5	149656671	149656830	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-73560	NM_001172698	133522		NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
62841	chr13	109785501	109788100	+	0	NA	promoter-TSS (NM_003749)	promoter-TSS (NM_003749)	-217	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
98692	chr17	47893371	47893530	+	0	NA	intron (NR_135480, intron 2 of 2)	intron (NR_135480, intron 2 of 2)	2366	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
25167	chr10	5374151	5374260	+	0	NA	exon (NM_053049, exon 2 of 2)	exon (NM_053049, exon 2 of 2)	9239	NM_053049	114131		NM_053049	ENSG00000178473	UCN3	SCP|SPC|UCNIII	urocortin 3	protein-coding
71597	chr14	106556701	106557000	+	0	NA	Intergenic	Intergenic	74411	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
226933	chr9	79603821	79604630	+	0	NA	intron (NM_001282760, intron 5 of 20)	L2a|LINE|L2	31048	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
41896	chr11	67260421	67260800	+	0	NA	Intergenic	Intergenic	-5863	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
60754	chr13	44908651	44908950	+	0	NA	Intergenic	Intergenic	80671	NM_012345	26747		NM_012345	ENSG00000083635	NUFIP1	NUFIP|Rsa1|bA540M5.1	nuclear FMR1 interacting protein 1	protein-coding
158265	chr22	50322621	50322950	+	0	NA	intron (NM_001001794, intron 1 of 19)	AluSx|SINE|Alu	4227	NM_001001794	414918		NM_001001794	ENSG00000205593	DENND6B	AFI1B|FAM116B	DENN domain containing 6B	protein-coding
85840	chr16	57010501	57010700	+	0	NA	intron (NR_169520, intron 1 of 47)	AluJo|SINE|Alu	21043	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
41351	chr11	65959801	65960230	+	0	NA	TTS (NM_152762)	TTS (NM_152762)	-1719	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
45359	chr11	118250571	118250730	+	0	NA	intron (NM_198275, intron 1 of 5)	AluSq2|SINE|Alu	1715	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
96935	chr17	42166401	42166800	+	0	NA	intron (NM_012285, intron 9 of 16)	intron (NM_012285, intron 9 of 16)	-11611	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
232486	chr9	136250771	136250930	+	0	NA	3' UTR (NM_001378188, exon 26 of 26)	3' UTR (NM_001378188, exon 26 of 26)	-5038	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
49773	chr12	31832701	31833430	+	0	NA	Intergenic	LTR77|LTR|ERV1	-40767	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
223088	chr8	143420471	143420730	+	0	NA	Intergenic	Intergenic	2921	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
80206	chr16	2157671	2157830	+	0	NA	intron (NM_032271, intron 1 of 20)	intron (NM_032271, intron 1 of 20)	1968	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
103126	chr17	77385971	77386600	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	10202	NM_001113494	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
22941	chr1	225978271	225979030	+	0	NA	Intergenic	Intergenic	20693	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
159489	chr3	14177851	14179650	+	0	NA	promoter-TSS (NM_001354727)	promoter-TSS (NM_001354727)	-67	NM_014463	27258		NM_014463	ENSG00000170860	LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
140339	chr2	232604171	232604330	+	0	NA	Intergenic	Intergenic	-1807	NM_001243252	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
43493	chr11	78417501	78419230	+	0	NA	promoter-TSS (NM_080491)	promoter-TSS (NM_080491)	-545	NM_080491	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
216609	chr8	22058471	22058880	+	0	NA	promoter-TSS (NM_001114138)	promoter-TSS (NM_001114138)	-405	NM_001978	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
203620	chr7	952921	953180	+	0	NA	intron (NM_001284308, intron 1 of 10)	intron (NM_001284308, intron 1 of 10)	1630	NM_006869	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
4617	chr1	22100921	22101180	+	0	NA	3' UTR (NM_001039802, exon 7 of 7)	3' UTR (NM_001039802, exon 7 of 7)	42047	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
115317	chr19	14943571	14943730	+	0	NA	Intergenic	Intergenic	2161	NM_012377	26658		NM_012377	ENSG00000127529	OR7C2	CIT-HSP-87M17|OR19-18|OR7C3	olfactory receptor family 7 subfamily C member 2	protein-coding
31480	chr10	96579921	96580350	+	0	NA	intron (NM_020123, intron 1 of 14)	intron (NM_020123, intron 1 of 14)	6877	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
155397	chr22	38327151	38327250	+	0	NA	intron (NM_001289912, intron 5 of 14)	AluSg|SINE|Alu	-9116	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
30813	chr10	85594371	85594680	+	0	NA	intron (NR_038986, intron 2 of 2)	intron (NR_038986, intron 2 of 2)	16794	NR_038986	100507470		NR_038986	ENSG00000234942	GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
144837	chr20	36863021	36864400	+	0	NA	promoter-TSS (NM_080627)	promoter-TSS (NM_080627)	-172	NM_080627	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
105886	chr18	3265371	3265830	+	0	NA	intron (NM_001144945, intron 1 of 3)	intron (NM_001144945, intron 1 of 3)	2881	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
19426	chr1	174204471	174205450	+	0	NA	intron (NM_001366447, intron 1 of 20)	MSTA|LTR|ERVL-MaLR	45440	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
198450	chr6	106116301	106116830	+	0	NA	Intergenic	Intergenic	17624	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
86982	chr16	68212171	68212330	+	0	NA	intron (NM_173165, intron 9 of 9)	intron (NM_173165, intron 9 of 9)	21249	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
139201	chr2	219254701	219255830	+	0	NA	promoter-TSS (NM_001278552)	promoter-TSS (NM_001278552)	-657	NM_001278552	7277		NM_006000	ENSG00000127824	TUBA4A	ALS22|H2-ALPHA|TUBA1	tubulin alpha 4a	protein-coding
157687	chr22	46314171	46314750	+	0	NA	intron (NM_016426, intron 6 of 11)	intron (NM_016426, intron 6 of 11)	17590	NM_016426	51512		NM_016426	ENSG00000075218	GTSE1	B99	G2 and S-phase expressed 1	protein-coding
87599	chr16	74107871	74108030	+	0	NA	Intergenic	Intergenic	107571	NR_104657	101928035		NR_104657	ENSG00000261404	PSMD7-DT	-	PSMD7 divergent transcript	ncRNA
138193	chr2	202663271	202663630	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	28481	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
216959	chr8	23001071	23001900	+	0	NA	intron (NM_015178, intron 1 of 9)	intron (NM_015178, intron 1 of 9)	1937	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
146693	chr20	50540821	50541080	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	30567	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
59654	chr13	28492571	28492930	+	0	NA	intron (NM_002019, intron 1 of 29)	intron (NM_002019, intron 1 of 29)	2378	NM_002019	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
201194	chr6	143399451	143399550	+	0	NA	Intergenic	L2a|LINE|L2	43177	NM_001286259	134637		NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase tRNA specific 2	protein-coding
78440	chr15	92815301	92815700	+	0	NA	Intergenic	MIRb|SINE|MIR	20016	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
37715	chr11	30585271	30585630	+	0	NA	promoter-TSS (NM_001377956)	promoter-TSS (NM_001377956)	104	NM_001377953	744		NM_001584	ENSG00000066382	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
50770	chr12	49030671	49030830	+	0	NA	exon (NM_003482, exon 42 of 55)	exon (NM_003482, exon 42 of 55)	-11974	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
5343	chr1	25261501	25261700	+	0	NA	intron (NR_135788, intron 1 of 3)	AluYf1|SINE|Alu	6325	NR_135777	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
238943	chrX	154840901	154841130	+	0	NA	intron (NM_019863, intron 4 of 4)	intron (NM_019863, intron 4 of 4)	-6353	NM_001162936	100132963		NM_001162936	ENSG00000203870	SMIM9	CXorf68	small integral membrane protein 9	protein-coding
170027	chr3	181266051	181266150	+	0	NA	intron (NR_075093, intron 2 of 4)	intron (NR_075093, intron 2 of 4)	34363	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
172245	chr4	1351671	1352530	+	0	NA	intron (NM_001317935, intron 4 of 13)	intron (NM_001317935, intron 4 of 13)	4544	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
161457	chr3	42190921	42191500	+	0	NA	intron (NM_001042646, intron 6 of 15)	intron (NM_001042646, intron 6 of 15)	31017	NM_014965	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
183056	chr5	73450971	73452200	+	0	NA	Intergenic	CpG	-2808	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
101944	chr17	74516671	74516830	+	0	NA	Intergenic	Intergenic	14725	NM_174892	124599		NM_174892	ENSG00000178789	CD300LB	CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5	CD300 molecule like family member b	protein-coding
109339	chr19	608071	608230	+	0	NA	exon (NM_001194, exon 4 of 8)	exon (NM_001194, exon 4 of 8)	18269	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
130404	chr2	85327201	85328850	+	0	NA	promoter-TSS (NM_001206841)	promoter-TSS (NM_001206841)	-36	NM_001368095	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
157719	chr22	46488051	46488150	+	0	NA	intron (NM_001378328, intron 1 of 34)	intron (NM_001378328, intron 1 of 34)	49520	NM_014246	9620		NM_014246	ENSG00000075275	CELSR1	ADGRC1|CDHF9|FMI2|HFMI2|LMPHM9|ME2	cadherin EGF LAG seven-pass G-type receptor 1	protein-coding
239337	chrY	19148721	19148980	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	-71303	NR_001543	83869		NM_031932	ENSG00000176728	TTTY14	CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14	testis expressed transcript, Y-linked 14	ncRNA
117799	chr19	29860401	29860730	+	0	NA	Intergenic	Intergenic	48574	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
37674	chr11	27362671	27363530	+	0	NA	exon (NM_030771, exon 1 of 6)	exon (NM_030771, exon 1 of 6)	115	NM_030771	91057		NM_030771	ENSG00000109881	CCDC34	L15|NY-REN-41|RAMA3|SPGF76	coiled-coil domain containing 34	protein-coding
22778	chr1	224419971	224420130	+	0	NA	intron (NM_001115113, intron 4 of 13)	MIR|SINE|MIR	-14590	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
227428	chr9	89924101	89924400	+	0	NA	Intergenic	L1MD3|LINE|L1	-45166	NR_109791	101927847		NR_109791		LOC101927847	-	uncharacterized LOC101927847	ncRNA
213892	chr7	142454951	142455680	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-19212	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
65602	chr14	52220821	52221550	+	0	NA	Intergenic	Intergenic	-46513	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
144496	chr20	35660971	35662150	+	0	NA	intron (NM_001198838, intron 1 of 2)	intron (NM_001198838, intron 1 of 2)	3340	NR_037188	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
58568	chr12	132427551	132427850	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-62451	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
167041	chr3	126612251	126613030	+	0	NA	intron (NM_001173513, intron 12 of 14)	intron (NM_001173513, intron 12 of 14)	42484	NM_052883	114112		NM_052883	ENSG00000197763	TXNRD3	TGR|TR2|TR2IT1|TRXR3|TXNR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1	thioredoxin reductase 3	protein-coding
154766	chr22	36516521	36516980	+	0	NA	exon (NM_003753, exon 11 of 15)	exon (NM_003753, exon 11 of 15)	-9710	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
86791	chr16	67813701	67813900	+	0	NA	intron (NM_018430, intron 1 of 15)	MIRc|SINE|MIR	6911	NM_001351158	55815		NM_018430	ENSG00000102904	TSNAXIP1	TXI1	translin associated factor X interacting protein 1	protein-coding
116052	chr19	17214371	17214550	+	0	NA	promoter-TSS (NM_018467)	promoter-TSS (NM_018467)	-897	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
69521	chr14	96309951	96310050	+	0	NA	intron (NM_018036, intron 28 of 41)	intron (NM_018036, intron 28 of 41)	53341	NM_018036	55102		NM_018036	ENSG00000066739	ATG2B	BLTP4B|C14orf103	autophagy related 2B	protein-coding
222876	chr8	142769851	142770150	+	0	NA	promoter-TSS (NM_001356372)	promoter-TSS (NM_001356372)	-172	NM_001356372	432355		NM_177458	ENSG00000283992	SLURP2	SLURP-2	secreted LY6/PLAUR domain containing 2	protein-coding
106260	chr18	12374551	12374850	+	0	NA	intron (NM_006796, intron 1 of 16)	intron (NM_006796, intron 1 of 16)	2527	NM_006796	10939		NM_006796	ENSG00000141385	AFG3L2	OPA12|SCA28|SPAX5	AFG3 like matrix AAA peptidase subunit 2	protein-coding
146794	chr20	50929101	50930000	+	0	NA	intron (NM_015339, intron 1 of 4)	intron (NM_015339, intron 1 of 4)	-1434	NR_110007	101927631		NR_110007	ENSG00000259456	ADNP-AS1	-	ADNP antisense RNA 1	ncRNA
107975	chr18	58600251	58600350	+	0	NA	promoter-TSS (NR_132963)	promoter-TSS (NR_132963)	-320	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
58739	chr12	132602251	132602350	+	0	NA	TTS (NM_001195520)	TTS (NM_001195520)	8282	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
156464	chr22	41254801	41255000	+	0	NA	intron (NM_001278651, intron 11 of 16)	AluY|SINE|Alu	-1850	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
139080	chr2	218870801	218871250	+	0	NA	intron (NM_006522, intron 1 of 3)	intron (NM_006522, intron 1 of 3)	-9827	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
96457	chr17	40223101	40223650	+	0	NA	intron (NM_133264, intron 1 of 7)	intron (NM_133264, intron 1 of 7)	4071	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
184598	chr5	103132771	103132930	+	0	NA	intron (NM_001276277, intron 2 of 30)	intron (NM_001276277, intron 2 of 30)	12549	NM_001276277	23262		NM_015216	ENSG00000145725	PPIP5K2	CFAP160|DFNB100|HISPPD1|IP7K2|VIP2	diphosphoinositol pentakisphosphate kinase 2	protein-coding
126332	chr2	27365921	27366180	+	0	NA	intron (NM_172195, intron 10 of 11)	(GT)n|Simple_repeat|Simple_repeat	4002	NM_001318965	8890		NM_015636	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta|VWM4	eukaryotic translation initiation factor 2B subunit delta	protein-coding
231242	chr9	129982121	129982380	+	0	NA	intron (NM_001363755, intron 2 of 15)	AluSg|SINE|Alu	60939	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
22118	chr1	211697371	211697780	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	21813	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
166447	chr3	113953921	113954180	+	0	NA	exon (NM_001320468, exon 3 of 5)	exon (NM_001320468, exon 3 of 5)	6037	NM_001320467	254887		NM_173570	ENSG00000184307	ZDHHC23	DHHC-23|NIDD	zinc finger DHHC-type palmitoyltransferase 23	protein-coding
54769	chr12	94145601	94145800	+	0	NA	Intergenic	Intergenic	-2877	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
205383	chr7	14647901	14648150	+	0	NA	intron (NM_001350705, intron 13 of 25)	L1PA2|LINE|L1	193425	NM_145695	1607		NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
197543	chr6	79070651	79071280	+	0	NA	intron (NM_017934, intron 4 of 39)	intron (NM_017934, intron 4 of 39)	7289	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
151119	chr21	44885501	44886650	+	0	NA	3' UTR (NM_001303238, exon 16 of 16)	3' UTR (NM_001303238, exon 16 of 16)	-12172	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
111199	chr19	3464971	3465130	+	0	NA	3' UTR (NM_001245005, exon 10 of 10)	3' UTR (NM_001245005, exon 10 of 10)	15475	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
150501	chr21	42831871	42832330	+	0	NA	Intergenic	FRAM|SINE|Alu	47175	NM_001260477	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
208308	chr7	66112651	66112950	+	0	NA	Intergenic	AluY|SINE|Alu	-2018	NM_001142414	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
139493	chr2	224526421	224526750	+	0	NA	intron (NM_003590, intron 3 of 15)	AluSx1|SINE|Alu	43370	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
106954	chr18	31353421	31353680	+	0	NA	intron (NR_110788, intron 2 of 3)	L1PA2|LINE|L1	386	NR_110789	101927718		NR_110788	ENSG00000266729	DSG1-AS1	-	DSG1 antisense RNA 1	ncRNA
70780	chr14	103516701	103516930	+	0	NA	Intergenic	Intergenic	6015	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
129257	chr2	68378851	68380150	+	0	NA	intron (NM_002664, intron 1 of 8)	intron (NM_002664, intron 1 of 8)	14218	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
2988	chr1	12016101	12016500	+	0	NA	Intergenic	AluJo|SINE|Alu	-3198	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
173872	chr4	24488551	24488980	+	0	NA	Intergenic	Intergenic	-15860	NM_001330752	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
199150	chr6	111727801	111728430	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	31016	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
37175	chr11	13964271	13964900	+	0	NA	intron (NM_006108, intron 1 of 15)	CpG	1862	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
50110	chr12	44870871	44871800	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	4326	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
30943	chr10	87504551	87505730	+	0	NA	exon (NM_001178117, exon 1 of 3)	exon (NM_001178117, exon 1 of 3)	247	NM_004897	9562		NM_004897	ENSG00000107789	MINPP1	HIPER1|MINPP2|MIPP|PCH16	multiple inositol-polyphosphate phosphatase 1	protein-coding
111042	chr19	3096901	3097100	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	2638	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
135314	chr2	160331221	160331750	+	0	NA	intron (NM_016836, intron 2 of 13)	L2c|LINE|L2	-59590	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
66364	chr14	61468471	61469030	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	101444	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
106604	chr18	22279021	22279480	+	0	NA	Intergenic	Intergenic	109661	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
158189	chr22	50234071	50234680	+	0	NA	intron (NM_020461, intron 2 of 24)	intron (NM_020461, intron 2 of 24)	10648	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
22811	chr1	224622371	224622880	+	0	NA	intron (NM_152495, intron 1 of 5)	intron (NM_152495, intron 1 of 5)	6308	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
219280	chr8	67579971	67580530	+	0	NA	intron (NM_020361, intron 2 of 10)	intron (NM_020361, intron 2 of 10)	166110	NM_020361	57094		NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
21386	chr1	205229201	205230550	+	0	NA	5' UTR (NM_001375652, exon 1 of 6)	5' UTR (NM_001375652, exon 1 of 6)	160	NM_001375652	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
207693	chr7	45770171	45770330	+	0	NA	Intergenic	AluJo|SINE|Alu	-1232	NR_024271	641977		NR_024271	ENSG00000291207	SEPTIN7P2	SEPT13|SEPT7B|SEPT7P2	septin 7 pseudogene 2	pseudo
54538	chr12	92134201	92134400	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	7413	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
136561	chr2	177555121	177555380	+	0	NA	Intergenic	Intergenic	-2454	NM_152517	150737		NM_152517	ENSG00000196659	IFT70B	IFT70|TTC30B|fleer	intraflagellar transport 70B	protein-coding
213968	chr7	142791621	142792980	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	21330	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
140500	chr2	233199871	233200500	+	0	NA	intron (NM_001017915, intron 25 of 26).2	intron (NM_001017915, intron 25 of 26).2	-51386	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
236252	chrX	65750501	65751530	+	0	NA	Intergenic	MER83C|LTR|ERV1	83361	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
85910	chr16	57080251	57080550	+	0	NA	intron (NM_001384955, intron 45 of 47)	MER113|DNA|hAT-Charlie	-12183	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
82303	chr16	15640821	15641180	+	0	NA	intron (NM_001184998, intron 1 of 26).2	AluJo|SINE|Alu	2154	NM_001184999	9665		NM_014647	ENSG00000166783	MARF1	KIAA0430|LKAP|LMKB|PPP1R34	meiosis regulator and mRNA stability factor 1	protein-coding
80866	chr16	3573101	3574650	+	0	NA	intron (NR_075083, intron 1 of 20)	AluJb|SINE|Alu	3528	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
91518	chr17	4964471	4965000	+	0	NA	intron (NM_004890, intron 1 of 6)	L2c|LINE|L2	3082	NM_004890	9552		NM_004890	ENSG00000091640	SPAG7	ACRP|FSA-1	sperm associated antigen 7	protein-coding
194292	chr6	32689601	32689830	+	0	NA	Intergenic	Intergenic	-23058	NM_002123	3119		NM_002123	ENSG00000179344	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
26121	chr10	13588171	13588330	+	0	NA	intron (NM_003675, intron 1 of 9)	AluSx|SINE|Alu	1285	NM_003675	8559		NM_003675	ENSG00000165630	PRPF18	PRP18|hPrp18	pre-mRNA processing factor 18	protein-coding
4671	chr1	22461801	22462000	+	0	NA	intron (NM_001083621, intron 2 of 18)	intron (NM_001083621, intron 2 of 18)	10049	NM_001083621	9923		NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
122373	chr19	49365601	49365800	+	0	NA	intron (NM_001197301, intron 3 of 3)	intron (NM_001197301, intron 3 of 3)	1823	NM_001197302	27120		NM_014419	ENSG00000104901	DKKL1	CT34|SGY|SGY-1|SGY1	dickkopf like acrosomal protein 1	protein-coding
78241	chr15	90686171	90686900	+	0	NA	intron (NR_120372, intron 2 of 3)	intron (NR_120372, intron 2 of 3)	26301	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
120075	chr19	42081551	42082080	+	0	NA	TTS (NM_001330519)	TTS (NM_001330519)	5649	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
34043	chr10	124735651	124735750	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	8678	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
35938	chr11	2465201	2465400	+	0	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	3846	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
186393	chr5	135185501	135185900	+	0	NA	intron (NR_161235, intron 3 of 5)	intron (NR_161235, intron 3 of 5)	62477	NR_037895	340073		NR_037895	ENSG00000249647	LINC02900	C5orf66-AS2	long intergenic non-protein coding RNA 2900	ncRNA
49113	chr12	14771601	14772750	+	0	NA	Intergenic	Intergenic	-1044	NM_175054	121504		NM_175054	ENSG00000197837	H4C16	H4-16|H4/p|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST4H4	H4 histone 16	protein-coding
157552	chr22	45648251	45648550	+	0	NA	Intergenic	Intergenic	-23398	NM_001167621	25814		NM_013236	ENSG00000130638	ATXN10	ATX10|E46L|HUMEEP|SCA10	ataxin 10	protein-coding
81335	chr16	4748051	4748880	+	0	NA	3' UTR (NM_021646, exon 6 of 6)	3' UTR (NM_021646, exon 6 of 6)	13928	NM_139170	146562		NM_139170	ENSG00000166246	DNAAF8	C16orf71|Daap1	dynein axonemal assembly factor 8	protein-coding
61752	chr13	74246171	74247030	+	0	NA	intron (NR_144451, intron 1 of 1)	intron (NR_144451, intron 1 of 1)	15156	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
26828	chr10	24617851	24618180	+	0	NA	intron (NR_160021, intron 9 of 26)	MIRb|SINE|MIR	4828	NR_160025	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
110407	chr19	1954021	1954880	+	0	NA	promoter-TSS (NR_033400)	promoter-TSS (NR_033400)	99	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
219334	chr8	70219371	70219930	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	-148398	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
207794	chr7	50263871	50264030	+	0	NA	Intergenic	Intergenic	-40114	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
219001	chr8	63172551	63173000	+	0	NA	exon (NM_001277814, exon 3 of 6)	exon (NM_001277814, exon 3 of 6)	3772	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
59155	chr13	21577651	21577950	+	0	NA	intron (NM_152726, intron 1 of 11)	AluSx3|SINE|Alu	26370	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
229054	chr9	114341421	114341880	+	0	NA	exon (NM_001317950, exon 21 of 22)	exon (NM_001317950, exon 21 of 22)	11781	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
35289	chr11	968951	969250	+	0	NA	intron (NR_144509, intron 2 of 20)	intron (NR_144509, intron 2 of 20)	43230	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
211949	chr7	112479401	112479680	+	0	NA	Intergenic	Intergenic	-1313	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
109500	chr19	827501	828450	+	0	NA	intron (NM_001700, intron 1 of 4)	MIR|SINE|MIR	138	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
45217	chr11	117873771	117873930	+	0	NA	intron (NM_001164837, intron 1 of 8)	intron (NM_001164837, intron 1 of 8)	2808	NM_022003	53826		NM_022003	ENSG00000137726	FXYD6	-	FXYD domain containing ion transport regulator 6	protein-coding
31281	chr10	92375451	92376250	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-42811	NR_038243	100507674		NR_038243		MARK2P9	-	MARK2 pseudogene 9	pseudo
106703	chr18	23436421	23436680	+	0	NA	intron (NR_148385, intron 1 of 13)	AluSx|SINE|Alu	1411	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
69903	chr14	99490871	99491030	+	0	NA	intron (NM_001099402, intron 1 of 10)	L1MC5a|LINE|L1	9541	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
180639	chr5	16990651	16990750	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-54412	NM_012334	4651		NM_012334	ENSG00000145555	MYO10	MyoX	myosin X	protein-coding
91382	chr17	4565221	4566030	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-5048	NM_001122890	124975		NM_153338	ENSG00000167741	GGT6	-	gamma-glutamyltransferase 6	protein-coding
213640	chr7	139681551	139682600	+	0	NA	intron (NM_022740, intron 2 of 14)	intron (NM_022740, intron 2 of 14)	95923	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
92074	chr17	7522071	7522230	+	0	NA	Intergenic	AluSx|SINE|Alu	-26908	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
186099	chr5	134120771	134121050	+	0	NA	intron (NR_033449, intron 1 of 7)	intron (NR_033449, intron 1 of 7)	-2708	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
115805	chr19	16418921	16419180	+	0	NA	intron (NM_021235, intron 10 of 22)	MER20B|DNA|hAT-Charlie	52920	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
113146	chr19	8336571	8338150	+	0	NA	intron (NM_198471, intron 2 of 10)	AluY|SINE|Alu	5902	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
66928	chr14	65432901	65433680	+	0	NA	intron (NM_001371534, intron 2 of 11)	intron (NM_001371534, intron 2 of 11)	20560	NM_001371533	2530		NM_004480	ENSG00000033170	FUT8	CDGF|CDGF1	fucosyltransferase 8	protein-coding
94858	chr17	31507101	31507300	+	0	NA	intron (NM_001346748, intron 1 of 12)	AluSx3|SINE|Alu	19092	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
105982	chr18	5703051	5703150	+	0	NA	Intergenic	Intergenic	-45719	NR_038839	645355		NR_038839	ENSG00000261738	MIR3976HG	LINC01469	MIR3976 host gene	ncRNA
196851	chr6	47483271	47483630	+	0	NA	intron (NM_012120, intron 1 of 17)	intron (NM_012120, intron 1 of 17)	5661	NM_012120	23607		NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
149391	chr21	31132301	31133530	+	0	NA	intron (NM_001353694, intron 23 of 27)	intron (NM_001353694, intron 23 of 27)	28025	NM_001353684	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
122079	chr19	48726471	48726980	+	0	NA	intron (NM_017805, intron 8 of 11)	intron (NM_017805, intron 8 of 11)	-7000	NM_001130915	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
29803	chr10	72297021	72297700	+	0	NA	Intergenic	Intergenic	23436	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
17868	chr1	159943351	159943700	+	0	NA	5' UTR (NM_020789, exon 2 of 21)	5' UTR (NM_020789, exon 2 of 21)	2088	NM_001135050	57549		NM_020789	ENSG00000085552	IGSF9	FP18798|IGSF9A|Nrt1	immunoglobulin superfamily member 9	protein-coding
171725	chr3	197948671	197948830	+	0	NA	intron (NM_032263, intron 2 of 11)	intron (NM_032263, intron 2 of 11)	1175	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
152880	chr22	22616071	22616230	+	0	NA	Intergenic	AluYm1|SINE|Alu	28391	NR_024591	25812		NM_014348		POM121L1P	POM121L1	POM121 transmembrane nucleoporin like 1, pseudogene	pseudo
84680	chr16	30768971	30769330	+	0	NA	intron (NM_014771, intron 15 of 19)	intron (NM_014771, intron 15 of 19)	6828	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
105213	chr17	82329601	82329830	+	0	NA	intron (NM_003004, intron 1 of 4)	MLT1D|LTR|ERVL-MaLR	4051	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
194127	chr6	31967471	31967630	+	0	NA	intron (NM_006929, intron 21 of 27).3	intron (NM_006929, intron 21 of 27).3	-3625	NR_026717	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
186142	chr5	134162901	134163280	+	0	NA	intron (NM_170679, intron 3 of 5)	AluJb|SINE|Alu	13860	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
46543	chr11	128473521	128474430	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	48335	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
142881	chr20	17859071	17859790	+	0	NA	Intergenic	Intergenic	103516	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
94151	chr17	28344651	28344830	+	0	NA	3' UTR (NM_021137, exon 7 of 7)	3' UTR (NM_021137, exon 7 of 7)	8979	NM_021137	7126		NM_021137	ENSG00000109079	TNFAIP1	B12|B61|BTBD34|EDP1|hBACURD2	TNF alpha induced protein 1	protein-coding
232722	chr9	136609901	136610100	+	0	NA	Intergenic	Intergenic	7181	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
124220	chr19	57240151	57241680	+	0	NA	exon (NM_001023563, exon 1 of 4)	exon (NM_001023563, exon 1 of 4)	283	NM_001145078	390980		NM_001023563	ENSG00000204524	ZNF805	-	zinc finger protein 805	protein-coding
119310	chr19	39848471	39849000	+	0	NA	Intergenic	Intergenic	-2356	NM_001436	2091		NM_001436	ENSG00000105202	FBL	FIB|FLRN|Nop1|RNU3IP1	fibrillarin	protein-coding
47036	chr12	442351	442730	+	0	NA	TTS (NM_001130147)	TTS (NM_001130147)	-17399	NM_173593	283358		NM_173593	ENSG00000139044	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein-coding
159390	chr3	13419401	13420500	+	0	NA	intron (NM_024923, intron 1 of 39)	CpG	372	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
187752	chr5	144142071	144142580	+	0	NA	Intergenic	Intergenic	28334	NM_001024947	81555		NM_030799	ENSG00000145817	YIPF5	FinGER5|MEDS2|SB140|SMAP-5|SMAP5|YIP1A|YIPFalpha1A	Yip1 domain family member 5	protein-coding
175853	chr4	78941201	78942000	+	0	NA	Intergenic	MIR|SINE|MIR	-2162	NM_001350106	152559		NM_177453	ENSG00000163291	PAQR3	RKTG	progestin and adipoQ receptor family member 3	protein-coding
17161	chr1	156207071	156207630	+	0	NA	intron (NM_001377390, intron 3 of 3)	AluY|SINE|Alu	-5638	NM_001199663	100527963		NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF-1|PMF1	PMF1-BGLAP readthrough	protein-coding
101208	chr17	65555801	65556980	+	0	NA	intron (NM_004655, intron 2 of 10)	intron (NM_004655, intron 2 of 10)	5258	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
182635	chr5	67003871	67005030	+	0	NA	promoter-TSS (NM_001297651)	promoter-TSS (NM_001297651)	-205	NM_001297651	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
235284	chrX	41921751	41922590	+	0	NA	intron (NM_001126055, intron 1 of 24)	intron (NM_001126055, intron 1 of 24)	864	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
222972	chr8	143204821	143206100	+	0	NA	Intergenic	Intergenic	-7758	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
208971	chr7	74198651	74199280	+	0	NA	Intergenic	Intergenic	7767	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
8238	chr1	39727521	39728300	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-10935	NR_036544	10450		NM_006112	ENSG00000084072	PPIE	CYP-33|CYP33|CypE	peptidylprolyl isomerase E	protein-coding
42808	chr11	72813731	72815200	+	0	NA	promoter-TSS (NM_001318766)	promoter-TSS (NM_001318766)	54	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
53186	chr12	59650471	59651130	+	0	NA	intron (NM_001270622, intron 1 of 5)	LTR16B2|LTR|ERVL	-38570	NR_073055	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
218518	chr8	53693021	53693330	+	0	NA	Intergenic	Intergenic	149867	NM_213620	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
100391	chr17	60151121	60152080	+	0	NA	intron (NR_137422, intron 1 of 11)	MIRb|SINE|MIR	1627	NM_000717	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
62911	chr13	110921421	110921880	+	0	NA	Intergenic	Intergenic	-6581	NR_104587	55608		NM_017664	ENSG00000088448	ANKRD10	-	ankyrin repeat domain 10	protein-coding
77514	chr15	84676721	84677180	+	0	NA	intron (NM_001271919, intron 3 of 4)	AluJo|SINE|Alu	-18751	NM_021077	4828		NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
73716	chr15	45136371	45136750	+	0	NA	exon (NM_017434, exon 10 of 35)	exon (NM_017434, exon 10 of 35)	6566	NM_017434	53905		NM_017434	ENSG00000137857	DUOX1	LNOX1|NOXEF1|THOX1	dual oxidase 1	protein-coding
111924	chr19	4726351	4727180	+	0	NA	Intergenic	AluY|SINE|Alu	-2923	NR_169285	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
196965	chr6	52996501	52997630	+	0	NA	Intergenic	Intergenic	1445	NR_001445	125050		NR_001445	ENSG00000202198	RN7SK	7SK	RNA component of 7SK nuclear ribonucleoprotein	snRNA
16138	chr1	153666671	153666830	+	0	NA	intron (NM_004515, intron 6 of 13)	MER20|DNA|hAT-Charlie	4243	NM_004515	3608		NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
127177	chr2	38371501	38371900	+	0	NA	intron (NM_001330462, intron 1 of 13)	AluSx|SINE|Alu	4830	NM_001330460	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
135087	chr2	157307001	157307300	+	0	NA	intron (NM_014568, intron 8 of 9)	intron (NM_014568, intron 8 of 9)	18674	NM_001304346	57471		NM_020711	ENSG00000136541	ERMN	JN|KIAA1189	ermin	protein-coding
125964	chr2	25230971	25231330	+	0	NA	non-coding (NR_135490, exon 24 of 24)	non-coding (NR_135490, exon 24 of 24)	20981	NM_001320893	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
197270	chr6	70669221	70669500	+	0	NA	intron (NM_001281440, intron 1 of 10)	intron (NM_001281440, intron 1 of 10)	830	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
205089	chr7	6663671	6664430	+	0	NA	Intergenic	CpG	26732	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
42101	chr11	67579221	67579930	+	0	NA	Intergenic	Intergenic	-4237	NM_000852	2950		NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
180701	chr5	21494851	21495200	+	0	NA	intron (NR_027028, intron 4 of 5).2	intron (NR_027028, intron 4 of 5).2	35545	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
211588	chr7	105800551	105800850	+	0	NA	intron (NM_001385596, intron 2 of 11)	MIRb|SINE|MIR	75885	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
6998	chr1	31847171	31847530	+	0	NA	Intergenic	L2a|LINE|L2	-31299	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
234891	chrX	30712921	30713350	+	0	NA	intron (NM_001205019, intron 13 of 20)	intron (NM_001205019, intron 13 of 20)	59712	NM_000167	2710		NM_000167	ENSG00000198814	GK	GK1|GKD	glycerol kinase	protein-coding
148864	chr21	8428911	8430330	+	0	NA	Intergenic	CpG	-2910	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
16831	chr1	155657451	155658200	+	0	NA	Intergenic	HERV4_I-int|LTR|ERV1	21430	NR_132762	106633810		NR_132762		SCARNA26A	-	small Cajal body-specific RNA 26A	ncRNA
121621	chr19	47430021	47430930	+	0	NA	intron (NM_015063, intron 9 of 9)	CpG	-8242	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
89311	chr16	88721801	88722450	+	0	NA	intron (NM_001142864, intron 36 of 50)	CpG-10173	-5788	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
112708	chr19	7152721	7153500	+	0	NA	intron (NM_001079817, intron 9 of 20)	(AC)n|Simple_repeat|Simple_repeat	83407	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
115661	chr19	16135171	16136100	+	0	NA	intron (NR_163150, intron 1 of 7)	L2a|LINE|L2	1607	NR_111903	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
235330	chrX	43677201	43677500	+	0	NA	intron (NM_001270458, intron 2 of 15)	intron (NM_001270458, intron 2 of 15)	21051	NM_000240	4128		NM_000240	ENSG00000189221	MAOA	BRNRS|MAO-A	monoamine oxidase A	protein-coding
213996	chr7	142856871	142857550	+	0	NA	intron (NM_004445, intron 1 of 19).2	intron (NM_004445, intron 1 of 19).2	2134	NM_004445	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
76890	chr15	77987801	77988100	+	0	NA	Intergenic	Intergenic	6275	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
1743	chr1	5996151	5996680	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	3739	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
211976	chr7	112898621	112898930	+	0	NA	intron (NM_152556, intron 2 of 4)	L1M1|LINE|L1	41100	NM_152556	154743		NM_152556	ENSG00000164603	BMT2	C7orf60|SAMTOR	base methyltransferase of 25S rRNA 2 homolog	protein-coding
184709	chr5	109353951	109354300	+	0	NA	intron (NM_014819, intron 7 of 9)	intron (NM_014819, intron 7 of 9)	-27756	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
189538	chr5	173894771	173894930	+	0	NA	intron (NM_001308192, intron 1 of 8)	intron (NM_001308192, intron 1 of 8)	1799	NM_001308193	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
31806	chr10	98444971	98445400	+	0	NA	intron (NM_001311345, intron 2 of 18)	intron (NM_001311345, intron 2 of 18)	-1136	NR_134454	101927278		NR_134451	ENSG00000287261	HPS1-AS1	-	HPS1 antisense RNA 1	ncRNA
20193	chr1	193103801	193104000	+	0	NA	intron (NM_001243399, intron 1 of 3)	intron (NM_001243399, intron 1 of 3)	1514	NM_197962	51022		NM_016066	ENSG00000023572	GLRX2	CGI-133|GRX2	glutaredoxin 2	protein-coding
99037	chr17	48877871	48878230	+	0	NA	intron (NR_135674, intron 3 of 3)	intron (NR_135674, intron 3 of 3)	-14737	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
201838	chr6	150080701	150081250	+	0	NA	Intergenic	Intergenic	-11854	NM_024518	79465		NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
230899	chr9	129234071	129234230	+	0	NA	Intergenic	Intergenic	-48266	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
100897	chr17	64398001	64398850	+	0	NA	Intergenic	Intergenic	-7565	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
156222	chr22	40341651	40342380	+	0	NA	Intergenic	Intergenic	-4485	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
26730	chr10	22680471	22680700	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	33523	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
75978	chr15	70512721	70513230	+	0	NA	Intergenic	Intergenic	-7047	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
81213	chr16	4508101	4508700	+	0	NA	intron (NM_001286268, intron 4 of 5).2	intron (NM_001286268, intron 4 of 5).2	12542	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
76865	chr15	77941601	77941800	+	0	NA	non-coding (NR_157580, exon 4 of 5)	non-coding (NR_157580, exon 4 of 5)	2861	NR_157580	440292		NR_157580		COMMD4P1	-	COMM domain containing 4 pseudogene 1	pseudo
117508	chr19	20038051	20038150	+	0	NA	intron (NM_033196, intron 1 of 3)	intron (NM_033196, intron 1 of 3)	1155	NM_001077349	91120		NM_033196	ENSG00000197124	ZNF682	BC39498_3	zinc finger protein 682	protein-coding
234397	chrX	16711821	16712930	+	0	NA	promoter-TSS (NM_001144002)	promoter-TSS (NM_001144002)	-158	NM_001144002	56474		NM_019857	ENSG00000047230	CTPS2	GATD5B	CTP synthase 2	protein-coding
195012	chr6	35445421	35445900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6678	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
215235	chr7	156890721	156891450	+	0	NA	intron (NR_146958, intron 1 of 14)	AluSx|SINE|Alu	2098	NM_001363412	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
179554	chr4	185145301	185145530	+	0	NA	intron (NM_001151, intron 2 of 3)	intron (NM_001151, intron 2 of 3)	2149	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
104399	chr17	81045101	81045300	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	10049	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
61625	chr13	73745971	73746130	+	0	NA	intron (NM_007249, intron 6 of 7)	intron (NM_007249, intron 6 of 7)	181806	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
145642	chr20	44890271	44890680	+	0	NA	intron (NM_003404, intron 2 of 6)	L2b|LINE|L2	4770	NM_003404	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
150386	chr21	42291351	42291700	+	0	NA	exon (NM_207174, exon 13 of 15)	exon (NM_207174, exon 13 of 15)	23884	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
149436	chr21	31408951	31409050	+	0	NA	intron (NM_001353690, intron 1 of 27)	intron (NM_001353690, intron 1 of 27)	-64646	NM_001353687	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
3930	chr1	17439301	17440600	+	0	NA	promoter-TSS (NM_018715).2	promoter-TSS (NM_018715).2	-273	NM_018715	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
51430	chr12	52026771	52026930	+	0	NA	intron (NM_001202233, intron 1 of 7)	intron (NM_001202233, intron 1 of 7)	4018	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
48717	chr12	10697251	10697550	+	0	NA	Intergenic	Intergenic	-23348	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
6034	chr1	27113221	27113480	+	0	NA	intron (NR_046474, intron 1 of 10)	AluJr4|SINE|Alu	41775	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
38789	chr11	47234421	47235680	+	0	NA	intron (NM_000107, intron 6 of 9)	intron (NM_000107, intron 6 of 9)	-13250	NM_001251935	10062		NM_005693	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	nuclear receptor subfamily 1 group H member 3	protein-coding
94410	chr17	29004871	29005180	+	0	NA	intron (NM_001290202, intron 1 of 16)	intron (NM_001290202, intron 1 of 16)	1008	NM_178860	124925		NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
188087	chr5	150210421	150211250	+	0	NA	3' UTR (NM_014228, exon 14 of 14)	3' UTR (NM_014228, exon 14 of 14)	20773	NM_014228	6534		NM_014228	ENSG00000011083	SLC6A7	PROT	solute carrier family 6 member 7	protein-coding
174374	chr4	38914921	38915180	+	0	NA	exon (NM_001350631, exon 6 of 12)	exon (NM_001350631, exon 6 of 12)	47018	NR_030300	693159		NR_030300	ENSG00000207944	MIR574	MIR574-3p|MIRN574|hsa-mir-574|mir-574	microRNA 574	ncRNA
196357	chr6	43226871	43227030	+	0	NA	intron (NM_006443, intron 1 of 3)	AluSz|SINE|Alu	2531	NM_199184	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
149897	chr21	36115251	36115600	+	0	NA	intron (NR_040084, intron 1 of 3)	AluSz|SINE|Alu	10544	NR_147887	105369306		NR_147887	ENSG00000233393	LOC105369306	-	uncharacterized LOC105369306	ncRNA
176900	chr4	102795021	102795450	+	0	NA	3' UTR (NM_181893, exon 7 of 7)	3' UTR (NM_181893, exon 7 of 7)	18198	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
43999	chr11	94519501	94520050	+	0	NA	intron (NM_001190462, intron 2 of 3)	intron (NM_001190462, intron 2 of 3)	7314	NM_001190462	643037		NM_001190462	ENSG00000257057	C11orf97	LINC01171	chromosome 11 open reading frame 97	protein-coding
93601	chr17	19134971	19135800	+	0	NA	intron (NM_001129778, intron 2 of 3)	MIR3|SINE|MIR	7796	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
71749	chr15	20764751	20765550	+	0	NA	Intergenic	Intergenic	-8999	NR_027992	606		NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
235766	chrX	49041751	49042300	+	0	NA	intron (NM_001282142, intron 1 of 9)	intron (NM_001282142, intron 1 of 9)	1332	NM_006521	7030		NM_006521	ENSG00000068323	TFE3	MRXSPF|RCCP2|RCCX1|TFEA|bHLHe33	transcription factor binding to IGHM enhancer 3	protein-coding
75741	chr15	68281021	68281480	+	0	NA	intron (NM_015322, intron 1 of 1)	intron (NM_015322, intron 1 of 1)	3505	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
139215	chr2	219285871	219287050	+	0	NA	3' UTR (NM_006736, exon 9 of 9)	3' UTR (NM_006736, exon 9 of 9)	7094	NM_006736	3300		NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HMNR5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
100436	chr17	61002451	61002550	+	0	NA	intron (NM_001353146, intron 15 of 25)	intron (NM_001353146, intron 15 of 25)	324649	NM_001330414	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
3348	chr1	15501521	15502000	+	0	NA	intron (NM_001278054, intron 2 of 4)	AluJb|SINE|Alu	22455	NM_001229	842		NM_001229	ENSG00000132906	CASP9	APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56	caspase 9	protein-coding
182552	chr5	65790451	65791030	+	0	NA	intron (NM_020726, intron 8 of 12)	intron (NM_020726, intron 8 of 12)	68535	NM_020726	57486		NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
99814	chr17	51801601	51801800	+	0	NA	intron (NM_020178, intron 3 of 8)	intron (NM_020178, intron 3 of 8)	357014	NM_020178	56934		NM_020178	ENSG00000154975	CA10	CA-RPX|CARPX|HUCEP-15	carbonic anhydrase 10	protein-coding
77135	chr15	79491151	79491350	+	0	NA	Intergenic	L1PA3|LINE|L1	58914	NM_015206	23251		NM_015206	ENSG00000169330	MINAR1	KIAA1024|UBTOR	membrane integral NOTCH2 associated receptor 1	protein-coding
163416	chr3	50552851	50553500	+	0	NA	Intergenic	Intergenic	14572	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
11047	chr1	84994201	84994800	+	0	NA	intron (NM_001330647, intron 1 of 14)	Tigger1|DNA|TcMar-Tigger	2613	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
142387	chr20	3813051	3813150	+	0	NA	TTS (NR_109859)	TTS (NR_109859)	4606	NR_109859	101929125		NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
181017	chr5	35857801	35858230	+	0	NA	intron (NM_002185, intron 1 of 7)	intron (NM_002185, intron 1 of 7)	1124	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
210268	chr7	99407701	99409950	+	0	NA	promoter-TSS (NM_003910)	promoter-TSS (NM_003910)	-144	NM_001370410	8896		NM_003910	ENSG00000106245	BUD31	Cwc14|EDG-2|EDG2|G10|YCR063W|fSAP17	BUD31 homolog	protein-coding
176650	chr4	99943071	99943630	+	0	NA	intron (NM_001031723, intron 1 of 7)	intron (NM_001031723, intron 1 of 7)	3268	NM_001278311	79982		NM_024920	ENSG00000164031	DNAJB14	EGNR9427|PRO34683	DnaJ heat shock protein family (Hsp40) member B14	protein-coding
207288	chr7	43993901	43994100	+	0	NA	intron (NR_003655, intron 4 of 15)	AluJr|SINE|Alu	-3868	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
237522	chrX	120250471	120251630	+	0	NA	intron (NM_006777, intron 1 of 1)	CpG	238	NM_006777	10009		NM_006777	ENSG00000177485	ZBTB33	ZNF-kaiso|ZNF348	zinc finger and BTB domain containing 33	protein-coding
152752	chr22	21738921	21739550	+	0	NA	Intergenic	Intergenic	-3441	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
181384	chr5	40669351	40670330	+	0	NA	Intergenic	MIRb|SINE|MIR	-10075	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
192644	chr6	26163551	26164500	+	0	NA	intron (NM_138720, intron 1 of 1)	MLT1F1|LTR|ERVL-MaLR	5903	NM_021063	3017		NM_021063	ENSG00000158373	H2BC5	H2B.1B|H2B/a|H2B/b|H2B/g|H2B/h|H2B/k|H2B/l|H2BFA|H2BFB|H2BFG|H2BFH|H2BFK|H2BFL|HIRIP2|HIST1H2BC|HIST1H2BD|HIST1H2BE|HIST1H2BF|HIST1H2BG|HIST1H2BI|dJ221C16.6	H2B clustered histone 5	protein-coding
157635	chr22	46111651	46112230	+	0	NA	promoter-TSS (NR_029478)	promoter-TSS (NR_029478)	-809	NR_029478	406883		NR_029478	ENSG00000283990	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	ncRNA
142014	chr20	1646671	1647450	+	0	NA	non-coding (NR_110090, exon 3 of 3)	non-coding (NR_110090, exon 3 of 3)	10719	NM_080816	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
48925	chr12	12689551	12689850	+	0	NA	intron (NM_006143, intron 2 of 3)	MLT1F1|LTR|ERVL-MaLR	6483	NM_006143	2842		NM_006143	ENSG00000183150	GPR19	-	G protein-coupled receptor 19	protein-coding
144885	chr20	36924801	36925300	+	0	NA	intron (NM_001363733, intron 6 of 15)	AluSg|SINE|Alu	26658	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
229440	chr9	121390351	121390490	+	0	NA	Intergenic	L1MD3|LINE|L1	-20116	NM_001270527	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
184631	chr5	107387901	107388300	+	0	NA	intron (NM_001962, intron 2 of 4)	intron (NM_001962, intron 2 of 4)	282837	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
198826	chr6	109089971	109090330	+	0	NA	intron (NM_014454, intron 1 of 9)	MIR|SINE|MIR	4696	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
53208	chr12	62269121	62269980	+	0	NA	intron (NM_001351164, intron 1 of 21)	AluJr4|SINE|Alu	9146	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
125132	chr2	9842271	9842430	+	0	NA	Intergenic	AluSz|SINE|Alu	-1092	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
119163	chr19	39397221	39398200	+	0	NA	exon (NM_001317770, exon 4 of 4)	exon (NM_001317770, exon 4 of 4)	6332	NM_001317770	55588		NM_017592	ENSG00000063322	MED29	IXL|MED2	mediator complex subunit 29	protein-coding
87747	chr16	75234951	75235250	+	0	NA	exon (NM_001170717, exon 5 of 7)	exon (NM_001170717, exon 5 of 7)	3560	NM_001170721	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
39383	chr11	59822971	59823230	+	0	NA	Intergenic	AluJb|SINE|Alu	-12322	NM_017840	54948		NM_017840	ENSG00000166902	MRPL16	L16mt|MRP-L16|PNAS-111|uL16m	mitochondrial ribosomal protein L16	protein-coding
10932	chr1	84147371	84147530	+	0	NA	intron (NM_182948, intron 1 of 9)	L5|LINE|RTE-X	3179	NM_001300916	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
188314	chr5	151208251	151208630	+	0	NA	intron (NM_015621, intron 1 of 8)	intron (NM_015621, intron 1 of 8)	-3694	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
187880	chr5	148741251	148741550	+	0	NA	Intergenic	L2a|LINE|L2	-85211	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
235798	chrX	49176601	49176800	+	0	NA	intron (NM_006150, intron 8 of 8)	intron (NM_006150, intron 8 of 8)	4802	NM_002668	5355		NM_002668	ENSG00000102007	PLP2	A4|A4LSB	proteolipid protein 2	protein-coding
131469	chr2	96408801	96409450	+	0	NA	Intergenic	AluJb|SINE|Alu	73359	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
201467	chr6	148749901	148750100	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	2970	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
210296	chr7	99446821	99447280	+	0	NA	intron (NM_006693, intron 2 of 7)	AluSq|SINE|Alu	7674	NM_001318162	10898		NM_006693	ENSG00000160917	CPSF4	CPSF30|NAR|NEB-1|NEB1	cleavage and polyadenylation specific factor 4	protein-coding
202594	chr6	158708051	158708800	+	0	NA	intron (NM_001242395, intron 8 of 15)	intron (NM_001242395, intron 8 of 15)	45022	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
61272	chr13	50106301	50106900	+	0	NA	non-coding (NR_002605, exon 2 of 2)	non-coding (NR_002605, exon 2 of 2)	18941	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
203745	chr7	1156971	1157130	+	0	NA	intron (NM_001365383, intron 3 of 5)	intron (NM_001365383, intron 3 of 5)	3146	NM_001365381	90637		NM_182491	ENSG00000178381	ZFAND2A	AIRAP	zinc finger AN1-type containing 2A	protein-coding
12710	chr1	109499551	109500450	+	0	NA	3' UTR (NM_001134400, exon 3 of 3)	3' UTR (NM_001134400, exon 3 of 3)	5906	NM_182580	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
29071	chr10	67894801	67895400	+	0	NA	intron (NM_001142498, intron 3 of 7)	intron (NM_001142498, intron 3 of 7)	3698	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
181230	chr5	39187821	39188830	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	31238	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
151060	chr21	44709451	44710430	+	0	NA	intron (NM_001272037, intron 1 of 12)	intron (NM_001272037, intron 1 of 12)	1632	NM_144991	54084		NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|ECTD14|STHAG10|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding
165933	chr3	107522521	107524100	+	0	NA	intron (NM_020235, intron 1 of 16)	CpG	348	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
78958	chr15	101320451	101321150	+	0	NA	intron (NM_138319, intron 17 of 20)	intron (NM_138319, intron 17 of 20)	-11496	NR_045387	100507472		NR_045387		LOC100507472	-	uncharacterized LOC100507472	ncRNA
192743	chr6	26400501	26401000	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-1525	NM_001145008	11119		NM_007048	ENSG00000026950	BTN3A1	BT3.1|BTF5|BTN3.1|CD277	butyrophilin subfamily 3 member A1	protein-coding
232895	chr9	136850421	136850780	+	0	NA	intron (NM_001287343, intron 3 of 3)	intron (NM_001287343, intron 3 of 3)	1191	NM_001287343	29085		NM_014172	ENSG00000054148	PHPT1	CGI-202|HEL-S-132P|HSPC141|PHP|PHP14	phosphohistidine phosphatase 1	protein-coding
107318	chr18	45107771	45108130	+	0	NA	Intergenic	L2a|LINE|L2	-60013	NM_001371319	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
171892	chr4	790421	791180	+	0	NA	intron (NM_006651, intron 3 of 3)	intron (NM_006651, intron 3 of 3)	-8952	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
159738	chr3	15859401	15860930	+	0	NA	promoter-TSS (NM_015199)	promoter-TSS (NM_015199)	-351	NM_001349279	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
147183	chr20	56504151	56504850	+	0	NA	intron (NM_080615, intron 3 of 6)	intron (NM_080615, intron 3 of 6)	-20244	NM_001012971	200232		NM_001012971	ENSG00000124103	FAM209A	C20orf106|dJ1153D9.3	family with sequence similarity 209 member A	protein-coding
67019	chr14	67516901	67517100	+	0	NA	intron (NM_001348546, intron 1 of 2)	MIRb|SINE|MIR	-1515	NM_001348549	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
154509	chr22	35883121	35883380	+	0	NA	intron (NM_001349999, intron 2 of 13)	MLT1F2-int|LTR|ERVL-MaLR	-42786	NM_014309	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
122046	chr19	48645901	48647850	+	0	NA	promoter-TSS (NM_001217)	promoter-TSS (NM_001217)	-688	NR_136241	770		NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
133448	chr2	119674521	119674900	+	0	NA	Intergenic	Intergenic	-4457	NM_001105198	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
14032	chr1	120743071	120743250	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	19221	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
33403	chr10	118343471	118343830	+	0	NA	Intergenic	Intergenic	-1326	NM_022063	63877		NM_022063	ENSG00000165669	FAM204A	C10orf84|bA319I23.1	family with sequence similarity 204 member A	protein-coding
113179	chr19	8403071	8403430	+	0	NA	intron (NM_004218, intron 4 of 4)	intron (NM_004218, intron 4 of 4)	-10053	NM_001005415	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
239385	chrY	21180771	21181200	+	0	NA	Intergenic	Intergenic	205375	NM_001282471	100533178		NM_001282471		PRORY	CYorf17	PRORY Y-linked lncRNA	ncRNA
50451	chr12	47722701	47722900	+	0	NA	intron (NM_001172439, intron 1 of 9)	intron (NM_001172439, intron 1 of 9)	2690	NM_006025	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
141061	chr2	238258021	238258430	+	0	NA	intron (NM_022817, intron 16 of 22)	intron (NM_022817, intron 16 of 22)	-18187	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
116117	chr19	17317321	17318100	+	0	NA	intron (NM_024050, intron 4 of 4)	AluJr|SINE|Alu	8147	NM_024050	79016		NM_024050	ENSG00000130311	DDA1	C19orf58|PCIA1	DET1 and DDB1 associated 1	protein-coding
156197	chr22	40285301	40285700	+	0	NA	intron (NM_001162501, intron 11 of 22)	intron (NM_001162501, intron 11 of 22)	-61000	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
104093	chr17	80264311	80264930	+	0	NA	intron (NM_020954, intron 2 of 16)	L2a|LINE|L2	3768	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
60122	chr13	39006201	39006480	+	0	NA	Intergenic	L1PA2|LINE|L1	-15481	NM_001144033	161003		NM_145286	ENSG00000133115	STOML3	Epb7.2l|SRO	stomatin like 3	protein-coding
105495	chr17	83091151	83091680	+	0	NA	intron (NM_001004431, intron 2 of 3).2	intron (NM_001004431, intron 2 of 3).2	10269	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
233208	chr9	137222601	137224190	+	0	NA	Intergenic	CpG	-1779	NM_199001	375791		NM_199001	ENSG00000197191	CYSRT1	C9orf169	cysteine rich tail 1	protein-coding
110450	chr19	1989451	1989750	+	0	NA	intron (NM_017797, intron 5 of 8)	intron (NM_017797, intron 5 of 8)	26114	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
164794	chr3	69328601	69329200	+	0	NA	intron (NM_015123, intron 1 of 22)	MER41B|LTR|ERV1	57188	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
185991	chr5	133552971	133553200	+	0	NA	intron (NM_015082, intron 3 of 15)	intron (NM_015082, intron 3 of 15)	59456	NM_015082	23105		NM_015082	ENSG00000053108	FSTL4	-	follistatin like 4	protein-coding
152556	chr22	21011401	21011800	+	0	NA	intron (NR_003608, intron 1 of 2)	intron (NR_003608, intron 1 of 2)	2687	NR_003608	113691		NR_003608	ENSG00000284130	TUBA3FP	-	tubulin alpha 3f pseudogene	pseudo
17667	chr1	157691401	157691630	+	0	NA	intron (NM_052939, intron 8 of 14)	intron (NM_052939, intron 8 of 14)	9254	NR_135217	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
183160	chr5	75109351	75109650	+	0	NA	intron (NM_001164443, intron 19 of 24)	LTR78|LTR|ERV1	-56942	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
71967	chr15	24957901	24958630	+	0	NA	intron (NM_001378257, intron 1 of 8)	intron (NM_001378257, intron 1 of 8)	1965	NM_001378257	6638		NM_003097	ENSG00000128739	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
149879	chr21	35801151	35801650	+	0	NA	Intergenic	L1PBa1|LINE|L1	80685	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
94657	chr17	30238451	30238750	+	0	NA	Intergenic	Intergenic	-2903	NM_001045	6532		NM_001045	ENSG00000108576	SLC6A4	5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT	solute carrier family 6 member 4	protein-coding
109557	chr19	883971	884130	+	0	NA	intron (NM_005481, intron 6 of 15)	intron (NM_005481, intron 6 of 15)	9137	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
34084	chr10	125148001	125148400	+	0	NA	intron (NM_001290214, intron 1 of 10)	intron (NM_001290214, intron 1 of 10)	10577	NM_001321013	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
93309	chr17	18171401	18172230	+	0	NA	intron (NM_016239, intron 62 of 64)	intron (NM_016239, intron 62 of 64)	-12013	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
177088	chr4	108064321	108064880	+	0	NA	intron (NM_016269, intron 9 of 11)	intron (NM_016269, intron 9 of 11)	59936	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
129081	chr2	65107971	65108130	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSq|SINE|Alu	22056	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
170894	chr3	193693871	193694030	+	0	NA	intron (NM_130832, intron 28 of 28)	intron (NM_130832, intron 28 of 28)	-66618	NR_046634	100873941		NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA
216662	chr8	22135001	22135750	+	0	NA	Intergenic	L2c|LINE|L2	-4323	NM_018411	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
26974	chr10	26737651	26738400	+	0	NA	intron (NM_001321979, intron 10 of 11)	intron (NM_001321979, intron 10 of 11)	40324	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
97327	chr17	43260421	43260980	+	0	NA	Intergenic	AluSx|SINE|Alu	6123	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
166496	chr3	114309971	114310130	+	0	NA	3' UTR (NM_173799, exon 4 of 4)	3' UTR (NM_173799, exon 4 of 4)	6519	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
220487	chr8	100492801	100493720	+	0	NA	Intergenic	Intergenic	66499	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
163325	chr3	50370551	50371200	+	0	NA	intron (NM_006030, intron 22 of 37)	intron (NM_006030, intron 22 of 37)	5512	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
180382	chr5	7873001	7874180	+	0	NA	intron (NR_134481, intron 3 of 13)	intron (NR_134481, intron 3 of 13)	4442	NR_157174	4552		NM_002454	ENSG00000124275	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
48209	chr12	8087571	8088030	+	0	NA	intron (NR_024260, intron 1 of 6)	intron (NR_024260, intron 1 of 6)	5526	NM_015509	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
143863	chr20	32542501	32542700	+	0	NA	intron (NM_001256798, intron 1 of 10)	AluJb|SINE|Alu	32641	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
166837	chr3	122976071	122976230	+	0	NA	promoter-TSS (NM_001256347)	promoter-TSS (NM_001256347)	-16	NM_001256347	54437		NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
150628	chr21	43385801	43386650	+	0	NA	Intergenic	Intergenic	-23876	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
230877	chr9	129183371	129183900	+	0	NA	Intergenic	Intergenic	-5374	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
42607	chr11	72104751	72105050	+	0	NA	intron (NM_001145310, intron 5 of 8)	intron (NM_001145310, intron 5 of 8)	-1603	NM_017907	55004		NM_017907	ENSG00000149357	LAMTOR1	C11orf59|PDRO|Ragulator1|p18|p27RF-Rho	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding
11110	chr1	86389221	86390030	+	0	NA	intron (NM_020729, intron 1 of 17)	L1PB1|LINE|L1	6436	NM_001366784	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
100879	chr17	64349901	64350500	+	0	NA	intron (NM_000442, intron 12 of 15)	intron (NM_000442, intron 12 of 15)	40660	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
164693	chr3	67653021	67653300	+	0	NA	intron (NM_001177599, intron 1 of 10)	intron (NM_001177599, intron 1 of 10)	1452	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
30984	chr10	88066651	88067850	+	0	NA	Intergenic	Intergenic	203625	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
206981	chr7	38318251	38318350	+	0	NA	Intergenic	Tigger5b|DNA|TcMar-Tigger	-23277	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
113222	chr19	8473851	8474330	+	0	NA	intron (NM_031203, intron 12 of 16)	intron (NM_031203, intron 12 of 16)	28550	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
140557	chr2	233283171	233284450	+	0	NA	intron (NM_001190266, intron 12 of 17).2	AluSq2|SINE|Alu	-4866	NR_003006	677772		NR_003006	ENSG00000251791	SCARNA6	U88	small Cajal body-specific RNA 6	ncRNA
5711	chr1	26385351	26386150	+	0	NA	Intergenic	L1MB8|LINE|L1	-12956	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
65325	chr14	50114601	50114950	+	0	NA	intron (NR_049738, intron 3 of 5)	AluJr4|SINE|Alu	1797	NM_001040662	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
44839	chr11	114077351	114078900	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	14914	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
99489	chr17	50188901	50189100	+	0	NA	exon (NM_000088, exon 41 of 51)	exon (NM_000088, exon 41 of 51)	12631	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
7778	chr1	36226251	36226880	+	0	NA	intron (NM_001321471, intron 2 of 12)	(TTA)n|Simple_repeat|Simple_repeat	2122	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
234379	chrX	15817001	15817630	+	0	NA	intron (NM_005089, intron 8 of 10)	intron (NM_005089, intron 8 of 10)	26831	NM_005089	8233		NM_005089	ENSG00000169249	ZRSR2	U2AF1-RS2|U2AF1L2|U2AF1RS2|URP|ZC3H22	zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2	protein-coding
104377	chr17	81026101	81026300	+	0	NA	Intergenic	Intergenic	8519	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
218740	chr8	58806271	58806680	+	0	NA	3' UTR (NM_014729, exon 9 of 9)	3' UTR (NM_014729, exon 9 of 9)	-146622	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
173428	chr4	8205401	8205600	+	0	NA	intron (NR_134639, intron 2 of 14)	intron (NR_134639, intron 2 of 14)	6210	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
56850	chr12	120255871	120256030	+	0	NA	intron (NM_001080855, intron 1 of 11)	AluSx|SINE|Alu	-5787	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
186226	chr5	134395021	134395600	+	0	NA	Intergenic	AluSx1|SINE|Alu	16571	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
224642	chr9	20617971	20618350	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	3778	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
129200	chr2	68203171	68204530	+	0	NA	intron (NM_000945, intron 2 of 5)	intron (NM_000945, intron 2 of 5)	45962	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
17378	chr1	156584951	156585250	+	0	NA	intron (NM_001105669, intron 7 of 10)	intron (NM_001105669, intron 7 of 10)	5377	NM_001105669	164118		NM_001105669	ENSG00000187862	TTC24	-	tetratricopeptide repeat domain 24	protein-coding
65473	chr14	51852301	51852700	+	0	NA	Intergenic	L2c|LINE|L2	-8112	NM_001243773	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
199107	chr6	111679971	111680500	+	0	NA	intron (NM_001370529, intron 10 of 11)	L2a|LINE|L2	-73961	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
70805	chr14	103544501	103545080	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	15594	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
70491	chr14	102090151	102090800	+	0	NA	intron (NM_001017963, intron 2 of 11)	AluY|SINE|Alu	-3431	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
102875	chr17	76511551	76512980	+	0	NA	Intergenic	Intergenic	-10838	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
68453	chr14	83639751	83639880	+	0	NA	Intergenic	L1PA3|LINE|L1	997183	NR_146650	101928599		NR_146650	ENSG00000258743	LINC02301	-	long intergenic non-protein coding RNA 2301	ncRNA
125513	chr2	12722251	12722550	+	0	NA	intron (NM_021643, intron 1 of 2)	intron (NM_021643, intron 1 of 2)	5464	NR_027303	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
102340	chr17	75486371	75486530	+	0	NA	intron (NM_001321148, intron 4 of 30)	intron (NM_001321148, intron 4 of 30)	9913	NM_001351203	9772		NM_014738	ENSG00000177728	TMEM94	IDDCDF|KIAA0195	transmembrane protein 94	protein-coding
52509	chr12	56045121	56045950	+	0	NA	TTS (NM_001029)	TTS (NM_001029)	3617	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
227976	chr9	95302551	95302850	+	0	NA	intron (NM_001243744, intron 1 of 13)	(AGCAC)n|Simple_repeat|Simple_repeat	14554	NM_001243743	2176		NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	FA complementation group C	protein-coding
86281	chr16	58603221	58604100	+	0	NA	intron (NM_206999, intron 1 of 30)	L2a|LINE|L2	26166	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
22242	chr1	212612051	212612150	+	0	NA	intron (NM_001206484, intron 2 of 4)	intron (NM_001206484, intron 2 of 4)	-2918	NM_001206486	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
80376	chr16	2532701	2533900	+	0	NA	Intergenic	AluSx|SINE|Alu	-1295	NR_036139	100422974		NR_036139	ENSG00000266232	MIR3178	mir-3178	microRNA 3178	ncRNA
104520	chr17	81237401	81237750	+	0	NA	intron (NM_144679, intron 1 of 11)	intron (NM_144679, intron 1 of 11)	1480	NM_144679	146705		NM_144679	ENSG00000167302	TEPSIN	C17orf56|ENTHD2	TEPSIN adaptor related protein complex 4 accessory protein	protein-coding
1325	chr1	2415521	2417030	+	0	NA	Intergenic	Intergenic	-2448	NM_001374427	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
222788	chr8	142041151	142041450	+	0	NA	Intergenic	Intergenic	-135039	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
214021	chr7	143265821	143266100	+	0	NA	intron (NM_001143679, intron 4 of 6)	intron (NM_001143679, intron 4 of 6)	2519	NM_015917	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
36335	chr11	3881301	3881500	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluY|SINE|Alu	25338	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
235475	chrX	46636271	46636580	+	0	NA	intron (NM_001257291, intron 12 of 16)	MER20|DNA|hAT-Charlie	62660	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
176365	chr4	88526271	88526980	+	0	NA	intron (NM_001375482, intron 1 of 24)	AluJb|SINE|Alu	2782	NM_001375483	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
121508	chr19	47182171	47183130	+	0	NA	intron (NM_001145713, intron 6 of 6)	intron (NM_001145713, intron 6 of 6)	-44292	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
156179	chr22	40238451	40238750	+	0	NA	intron (NM_015088, intron 1 of 20)	L2a|LINE|L2	60675	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
234073	chrX	8748871	8749100	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-16848	NM_000216	3730		NM_000216	ENSG00000011201	ANOS1	ADMLX|HH1|HHA|KAL|KAL1|KALIG-1|KMS|WFDC19	anosmin 1	protein-coding
58998	chr13	20117401	20117600	+	0	NA	Intergenic	AluJb|SINE|Alu	14799	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
153117	chr22	23695021	23695480	+	0	NA	non-coding (NR_024448, exon 8 of 12)	non-coding (NR_024448, exon 8 of 12)	-1166	NM_001329425	266747		NM_153615	ENSG00000159496	RGL4	Rgr	ral guanine nucleotide dissociation stimulator like 4	protein-coding
113197	chr19	8443351	8443450	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1575	NM_005968	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
213947	chr7	142709971	142710330	+	0	NA	intron (NM_001130026, intron 10 of 10)	MER50B|LTR|ERV1	-39322	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
96530	chr17	40349971	40350130	+	0	NA	intron (NM_000964, intron 4 of 8)	intron (NM_000964, intron 4 of 8)	-6914	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
66874	chr14	65081251	65081900	+	0	NA	intron (NM_145113, intron 3 of 5)	intron (NM_145113, intron 3 of 5)	-8343	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
18600	chr1	165645501	165646200	+	0	NA	intron (NM_004528, intron 1 of 5)	intron (NM_004528, intron 1 of 5)	14616	NM_004528	4259		NM_004528	ENSG00000143198	MGST3	GST-3|GST-III	microsomal glutathione S-transferase 3	protein-coding
87969	chr16	80536351	80536450	+	0	NA	intron (NR_120307, intron 1 of 5)	L1ME3A|LINE|L1	-4334	NM_001305017	83657		NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein light chain roadblock-type 2	protein-coding
49096	chr12	14577101	14577700	+	0	NA	intron (NR_120465, intron 2 of 5)	intron (NR_120465, intron 2 of 5)	-9517	NM_024829	79887		NM_024829	ENSG00000121316	PLBD1	-	phospholipase B domain containing 1	protein-coding
78812	chr15	99562871	99563430	+	0	NA	Intergenic	Intergenic	-2267	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
225885	chr9	39675221	39675680	+	0	NA	Intergenic	Intergenic	134709	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
77703	chr15	85685401	85685950	+	0	NA	intron (NM_007200, intron 16 of 36)	AluJr4|SINE|Alu	65725	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
105778	chr18	2809371	2809930	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-37356	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
85412	chr16	50315101	50315750	+	0	NA	TTS (NM_001173984)	TTS (NM_001173984)	22809	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
235562	chrX	47333001	47333200	+	0	NA	Intergenic	AluJr|SINE|Alu	-37478	NM_003446	7712		NM_003446	ENSG00000147117	ZNF157	HZF22	zinc finger protein 157	protein-coding
46584	chr11	128512201	128513180	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	9620	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
13023	chr1	111203401	111205230	+	0	NA	exon (NM_001271833, exon 1 of 12)	exon (NM_001271833, exon 1 of 12)	223	NM_001271833	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
223125	chr8	143475051	143475350	+	0	NA	intron (NM_015117, intron 5 of 11)	intron (NM_015117, intron 5 of 11)	31048	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
135251	chr2	159717151	159717450	+	0	NA	intron (NM_001376235, intron 3 of 11)	MLT1H2|LTR|ERVL-MaLR	4794	NM_001376255	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
182756	chr5	68287671	68288750	+	0	NA	promoter-TSS (NM_181524)	promoter-TSS (NM_181524)	-309	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
92246	chr17	7922571	7924000	+	0	NA	intron (NM_004732, intron 13 of 13)	intron (NM_004732, intron 13 of 13)	6150	NM_004732	9196		NM_004732	ENSG00000170049	KCNAB3	AKR6A9|KCNA3.1B|KCNA3B|KV-BETA-3	potassium voltage-gated channel subfamily A regulatory beta subunit 3	protein-coding
19652	chr1	180236021	180236680	+	0	NA	intron (NM_033343, intron 1 of 5)	intron (NM_033343, intron 1 of 5)	6086	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
26627	chr10	22434971	22435850	+	0	NA	TTS (NR_036533)	TTS (NR_036533)	2519	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
72149	chr15	29087301	29087700	+	0	NA	intron (NM_001353793, intron 5 of 12).2	intron (NM_001353793, intron 5 of 12).2	16842	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
132574	chr2	106499701	106499900	+	0	NA	intron (NM_001349727, intron 3 of 5)	L1MB7|LINE|L1	12436	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
237726	chrX	126109571	126109830	+	0	NA	promoter-TSS (NR_110409)	promoter-TSS (NR_110409)	-62	NR_110409	101928495		NR_110409	ENSG00000237208	LOC101928495	-	uncharacterized LOC101928495	ncRNA
166468	chr3	114231471	114232550	+	0	NA	Intergenic	Intergenic	5568	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
131745	chr2	98452321	98452830	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	6565	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
72347	chr15	31335351	31335650	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	8665	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
79195	chr16	334671	334830	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	17973	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
129814	chr2	71617921	71618700	+	0	NA	intron (NM_003494, intron 40 of 54)	(GT)n|Simple_repeat|Simple_repeat	151611	NM_001130987	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
65060	chr14	39285301	39285500	+	0	NA	intron (NM_001354153, intron 4 of 21)	SVA_C|Retroposon|SVA	18015	NM_001354144	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
234346	chrX	15242971	15243130	+	0	NA	TTS (NM_001031739)	TTS (NM_001031739)	27033	NM_024087	140462		NM_024087	ENSG00000102048	ASB9	-	ankyrin repeat and SOCS box containing 9	protein-coding
110922	chr19	2779821	2780280	+	0	NA	intron (NM_003021, intron 1 of 11)	AluJr|SINE|Alu	3223	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
147458	chr20	59016571	59017200	+	0	NA	Intergenic	Intergenic	-2544	NM_030773	81027		NM_030773	ENSG00000101162	TUBB1	MACTHC1	tubulin beta 1 class VI	protein-coding
176607	chr4	99043221	99043930	+	0	NA	intron (NM_015143, intron 7 of 10)	intron (NM_015143, intron 7 of 10)	45213	NM_000671	128		NM_000671	ENSG00000197894	ADH5	ADH-3|ADHX|AMEDS|BMFS7|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding
133467	chr2	119793001	119793200	+	0	NA	intron (NM_002830, intron 1 of 26)	MER11C|LTR|ERVK	33178	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
164288	chr3	57591571	57592550	+	0	NA	intron (NM_001660, intron 1 of 5)	L1MB7|LINE|L1	5284	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
203469	chr7	497571	497730	+	0	NA	3' UTR (NM_002607, exon 7 of 7)	3' UTR (NM_002607, exon 7 of 7)	22194	NM_002607	5154		NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
85635	chr16	55465021	55465480	+	0	NA	Intergenic	Intergenic	-2953	NR_147198	107984884		NR_147198		MMP2-AS1	-	MMP2 antisense RNA 1	ncRNA
183313	chr5	76680621	76680880	+	0	NA	intron (NM_001285462, intron 16 of 23)	AluJr|SINE|Alu	-31653	NR_028375	100302746		NR_028375		NCRUPAR	NCRNA00193|ncR-uPAR	non-protein coding RNA, upstream of F2R/PAR1	ncRNA
35547	chr11	1607251	1607550	+	0	NA	TTS (NM_001012708)	TTS (NM_001012708)	1063	NM_001012708	387266		NM_001012708	ENSG00000196224	KRTAP5-3	KRTAP5-9|KRTAP5.3	keratin associated protein 5-3	protein-coding
137774	chr2	199459501	199460280	+	0	NA	intron (NM_015265, intron 2 of 11)	CpG-16887	-1951	NR_134967	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
163541	chr3	51676201	51676400	+	0	NA	intron (NM_001243727, intron 2 of 3)	intron (NM_001243727, intron 2 of 3)	4673	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
232526	chr9	136329821	136330080	+	0	NA	intron (NM_015597, intron 1 of 8)	intron (NM_015597, intron 1 of 8)	2411	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
79160	chr16	281901	282300	+	0	NA	exon (NM_001176, exon 3 of 6)	exon (NM_001176, exon 3 of 6)	-1064	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
79408	chr16	675251	676050	+	0	NA	promoter-TSS (NM_001278720)	promoter-TSS (NM_001278720)	-21	NM_001278721	9028		NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	rhomboid like 1	protein-coding
65095	chr14	40348101	40348530	+	0	NA	Intergenic	L1PA2|LINE|L1	-606396	NR_109758	644919		NR_109757		LINC02315	-	long intergenic non-protein coding RNA 2315	ncRNA
100846	chr17	64126751	64127330	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	3104	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
187556	chr5	142782021	142782280	+	0	NA	intron (NM_001349547, intron 1 of 21)	L2c|LINE|L2	10923	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
64816	chr14	35040401	35040830	+	0	NA	Intergenic	Intergenic	-4292	NM_001079519	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
63666	chr14	21053521	21053780	+	0	NA	intron (NM_001282211, intron 1 of 14)	AluSg4|SINE|Alu	-4172	NM_138331	122665		NM_138331	ENSG00000173431	RNASE8	RAE2	ribonuclease A family member 8	protein-coding
67340	chr14	69659851	69660150	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	48404	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
50047	chr12	44502501	44502930	+	0	NA	Intergenic	LTR12D|LTR|ERV1	372946	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
196300	chr6	43021171	43022480	+	0	NA	TTS (NR_040101)	TTS (NR_040101)	202	NM_033112	88745		NM_033112	ENSG00000124541	RRP36	C6orf153|dJ20C7.4	ribosomal RNA processing 36	protein-coding
176957	chr4	103096401	103096600	+	0	NA	intron (NM_020139, intron 1 of 9)	intron (NM_020139, intron 1 of 9)	3334	NM_020139	56898		NM_020139	ENSG00000164039	BDH2	DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308	3-hydroxybutyrate dehydrogenase 2	protein-coding
159529	chr3	14431441	14433560	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	29894	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
95682	chr17	38417171	38418030	+	0	NA	Intergenic	Intergenic	-10864	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
194974	chr6	35340301	35341030	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-1893	NM_001171818	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
210029	chr7	94022521	94022850	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-18330	NM_001317739	10282		NM_005868	ENSG00000105829	BET1	HBET1|MDRP	Bet1 golgi vesicular membrane trafficking protein	protein-coding
127924	chr2	46364771	46365150	+	0	NA	intron (NM_001430, intron 6 of 15)	intron (NM_001430, intron 6 of 15)	29207	NR_146999	105374582		NR_146999	ENSG00000228100	LINC01820	-	long intergenic non-protein coding RNA 1820	ncRNA
209473	chr7	76542901	76543130	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2629	NM_001351597	102723555		NM_001351597	ENSG00000185040	SPDYE16	-	speedy/RINGO cell cycle regulator family member E16	protein-coding
111177	chr19	3364871	3365100	+	0	NA	intron (NM_205843, intron 1 of 10)	intron (NM_205843, intron 1 of 10)	-1598	NM_001245002	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
23080	chr1	226649271	226649430	+	0	NA	intron (NM_002221, intron 2 of 7)	(GT)n|Simple_repeat|Simple_repeat	25718	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
230908	chr9	129257871	129259140	+	0	NA	Intergenic	CpG	-23911	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
226131	chr9	63342621	63342880	+	0	NA	intron (NR_160665, intron 3 of 3)	intron (NR_160665, intron 3 of 3)	8212	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
201448	chr6	148203951	148204530	+	0	NA	Intergenic	Intergenic	-68088	NM_001346505	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
124118	chr19	55666051	55666350	+	0	NA	intron (NM_007279, intron 7 of 11)	intron (NM_007279, intron 7 of 11)	-8995	NM_001321263	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
208645	chr7	73005121	73006480	+	0	NA	promoter-TSS (NR_130940)	promoter-TSS (NR_130940)	143	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
73512	chr15	43774851	43775150	+	0	NA	intron (NM_025165, intron 6 of 10)	AluJo|SINE|Alu	1966	NM_025165	80237		NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
58064	chr12	124539171	124539730	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	28162	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
18479	chr1	161623251	161624000	+	0	NA	3' UTR (NM_001271036, exon 5 of 5)	3' UTR (NM_001271036, exon 5 of 5)	7422	NM_001271036	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
88424	chr16	84729651	84729750	+	0	NA	intron (NM_001272075, intron 2 of 14)	intron (NM_001272075, intron 2 of 14)	29700	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
188251	chr5	151069801	151070250	+	0	NA	intron (NM_001252390, intron 1 of 17)	MIR|SINE|MIR	-4894	NM_001258456	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
19917	chr1	184380451	184381150	+	0	NA	Intergenic	Intergenic	-6229	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
198595	chr6	107709251	107709550	+	0	NA	intron (NM_001286409, intron 2 of 3)	intron (NM_001286409, intron 2 of 3)	22750	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
75824	chr15	69415751	69416050	+	0	NA	promoter-TSS (NR_132970)	promoter-TSS (NR_132970)	-871	NR_132970	145694		NR_132969	ENSG00000259426	KIF23-AS1	-	KIF23 and PAQR5 antisense RNA 1	ncRNA
117621	chr19	23271751	23272150	+	0	NA	intron (NR_103741, intron 1 of 4)	L1PA13|LINE|L1	2301	NR_103742	100132815		NR_103741		IPO5P1	-	importin 5 pseudogene 1	pseudo
1949	chr1	6569971	6570330	+	0	NA	intron (NM_138697, intron 1 of 5)	LTR21B|LTR|ERV1	-9844	NM_001278648	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
149846	chr21	35044571	35044930	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	4552	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
230658	chr9	128701951	128703650	+	0	NA	5' UTR (NM_013355, exon 1 of 22)	5' UTR (NM_013355, exon 1 of 22)	297	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
73388	chr15	42574921	42576530	+	0	NA	exon (NM_020759, exon 1 of 33)	exon (NM_020759, exon 1 of 33)	119	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
41701	chr11	66643401	66644530	+	0	NA	exon (NM_001198845, exon 2 of 3)	exon (NM_001198845, exon 2 of 3)	5262	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
25686	chr10	8563501	8563700	+	0	NA	Intergenic	Intergenic	30791	NR_134492	105376398		NR_134492		LOC105376398	-	uncharacterized LOC105376398	ncRNA
45709	chr11	119082351	119082980	+	0	NA	TTS (NR_165448)	TTS (NR_165448)	-2212	NM_001258209	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
227588	chr9	92439151	92439680	+	0	NA	intron (NM_001286969, intron 4 of 6)	intron (NM_001286969, intron 4 of 6)	-14861	NM_005014	4958		NM_005014	ENSG00000127083	OMD	OSAD|SLRR2C	osteomodulin	protein-coding
10430	chr1	66090901	66091330	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-40397	NR_123718	101927139		NR_123718	ENSG00000227466	PDE4B-AS1	-	PDE4B antisense RNA 1	ncRNA
1377	chr1	2528851	2531400	+	0	NA	exon (NM_001010926, exon 1 of 3).2	exon (NM_001010926, exon 1 of 3).2	138	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
54947	chr12	96236051	96236750	+	0	NA	intron (NM_005230, intron 2 of 4)	intron (NM_005230, intron 2 of 4)	-19098	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
137673	chr2	197457771	197457930	+	0	NA	intron (NM_001320820, intron 1 of 4)	AluSx|SINE|Alu	4086	NM_001320819	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
97097	chr17	42441771	42442450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-16768	NM_001378547	535		NM_005177	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|DEE104|NEDEBA|Stv1|VPP1|Vph1|a1	ATPase H+ transporting V0 subunit a1	protein-coding
98005	chr17	45311771	45313500	+	0	NA	intron (NM_003954, intron 1 of 15)	FLAM_C|SINE|Alu	4385	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
175289	chr4	67573271	67573450	+	0	NA	intron (NM_012108, intron 2 of 8)	L3|LINE|CR1	14633	NM_001317769	26228		NM_012108	ENSG00000035720	STAP1	BRDG1|STAP-1	signal transducing adaptor family member 1	protein-coding
230371	chr9	128075371	128075530	+	0	NA	intron (NM_001006641, intron 1 of 9)	FLAM_C|SINE|Alu	7250	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
60304	chr13	40644621	40645450	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	21606	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
210247	chr7	99388471	99388630	+	0	NA	intron (NM_005720, intron 4 of 9)	MIRb|SINE|MIR	13820	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
212025	chr7	114928101	114928730	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	6261	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
166004	chr3	108134201	108135150	+	0	NA	intron (NR_110028, intron 1 of 2)	intron (NR_110028, intron 1 of 2)	8854	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
138991	chr2	218308171	218308530	+	0	NA	intron (NM_015488, intron 2 of 9)	AluSg|SINE|Alu	-14829	NM_022572	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
21718	chr1	206768901	206769800	+	0	NA	intron (NR_168466, intron 5 of 5)	intron (NR_168466, intron 5 of 5)	1253	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
127199	chr2	38552071	38552830	+	0	NA	Intergenic	L3|LINE|CR1	-36710	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
20016	chr1	185300371	185300530	+	0	NA	exon (NM_006469, exon 11 of 15)	exon (NM_006469, exon 11 of 15)	16793	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
166331	chr3	112857601	112857800	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-10844	NM_001370552	344807		NM_001008784	ENSG00000206531	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1 like	protein-coding
49326	chr12	21680251	21680750	+	0	NA	Intergenic	Intergenic	-22645	NM_001315537	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
94912	chr17	31858401	31859950	+	0	NA	promoter-TSS (NM_001330176)	promoter-TSS (NM_001330176)	69	NM_018405	55352		NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
210323	chr7	99491701	99492200	+	0	NA	intron (NM_001345968, intron 2 of 2)	AluYm1|SINE|Alu	8331	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
13393	chr1	113945901	113946430	+	0	NA	intron (NM_198268, intron 2 of 15)	intron (NM_198268, intron 2 of 15)	-4980	NM_198269	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
19725	chr1	181106971	181107130	+	0	NA	Intergenic	Intergenic	18350	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
133838	chr2	128092771	128092930	+	0	NA	intron (NR_027671, intron 1 of 40)	intron (NR_027671, intron 1 of 40)	1650	NR_027671	56886		NM_020120	ENSG00000136731	UGGT1	HUGT1|UGCGL1|UGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding
127042	chr2	37198051	37198230	+	0	NA	intron (NM_001322375, intron 1 of 4)	AluSx1|SINE|Alu	1644	NR_136316	100505876		NM_001322373	ENSG00000218739	CEBPZOS	CEBPZ-AS1	CEBPZ opposite strand	protein-coding
190463	chr5	180084251	180084680	+	0	NA	Intergenic	MER21C|LTR|ERVL	-12706	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
11451	chr1	89854801	89855030	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	32976	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
4182	chr1	19429501	19429950	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	54570	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
15459	chr1	150346421	150346680	+	0	NA	intron (NR_146768, intron 14 of 15)	intron (NR_146768, intron 14 of 15)	-17561	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
56418	chr12	113306421	113306680	+	0	NA	exon (NM_024959, exon 14 of 16)	exon (NM_024959, exon 14 of 16)	15027	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
216916	chr8	22706871	22707330	+	0	NA	Intergenic	Intergenic	-13620	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
104871	chr17	81859811	81862030	+	0	NA	promoter-TSS (NM_000918)	promoter-TSS (NM_000918)	-385	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
222294	chr8	133470201	133470800	+	0	NA	intron (NM_173344, intron 5 of 9)	intron (NM_173344, intron 5 of 9)	101387	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
89619	chr16	89312201	89312600	+	0	NA	intron (NM_013275, intron 3 of 12)	(GCAGG)n|Simple_repeat|Simple_repeat	-8052	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
37416	chr11	17280471	17280630	+	0	NA	intron (NM_001352672, intron 1 of 14)	intron (NM_001352672, intron 1 of 14)	3580	NM_001352672	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
183019	chr5	73095771	73096430	+	0	NA	Intergenic	Intergenic	-24475	NM_173490	134285		NM_173490	ENSG00000157111	TMEM171	PRP2	transmembrane protein 171	protein-coding
97129	chr17	42539271	42539650	+	0	NA	intron (NM_000263, intron 4 of 5)	L2c|LINE|L2	3219	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
186077	chr5	134097101	134097850	+	0	NA	Intergenic	Intergenic	-17206	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
76375	chr15	74603951	74604050	+	0	NA	Intergenic	MIR3|SINE|MIR	-4372	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
36213	chr11	3504601	3504800	+	0	NA	Intergenic	Intergenic	-27627	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
156146	chr22	40175721	40176050	+	0	NA	intron (NM_001024843, intron 4 of 23)	intron (NM_001024843, intron 4 of 23)	-2040	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
24916	chr10	1062371	1062600	+	0	NA	intron (NM_014023, intron 1 of 13)	intron (NM_014023, intron 1 of 13)	-5781	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
189729	chr5	176544821	176545250	+	0	NA	intron (NM_001171976, intron 1 of 31)	intron (NM_001171976, intron 1 of 31)	2524	NM_001171976	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
93107	chr17	17680851	17682080	+	0	NA	promoter-TSS (NM_030665)	promoter-TSS (NM_030665)	7	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
76423	chr15	74785801	74786780	+	0	NA	intron (NM_001127190, intron 2 of 13)	AluSp|SINE|Alu	-2254	NM_001354988	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
229830	chr9	125759121	125759500	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	11127	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
77226	chr15	81216551	81216670	+	0	NA	intron (NM_001352686, intron 1 of 18)	intron (NM_001352686, intron 1 of 18)	17134	NM_001352686	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
90012	chr16	89888221	89888480	+	0	NA	intron (NM_014972, intron 5 of 17)	AluSp|SINE|Alu	14758	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
157756	chr22	46677751	46678200	+	0	NA	3' UTR (NM_015124, exon 19 of 19)	3' UTR (NM_015124, exon 19 of 19)	57589	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
122097	chr19	48750351	48750450	+	0	NA	exon (NM_000148, exon 4 of 4)	exon (NM_000148, exon 4 of 4)	2241	NM_001384359	2523		NM_000148	ENSG00000174951	FUT1	H|HH|HSC	fucosyltransferase 1 (H blood group)	protein-coding
227949	chr9	94681471	94681700	+	0	NA	Intergenic	Intergenic	-41322	NM_001127628	2203		NM_000507	ENSG00000165140	FBP1	FBP	fructose-bisphosphatase 1	protein-coding
86806	chr16	67839471	67840080	+	0	NA	intron (NM_025082, intron 1 of 15)	AluSq|SINE|Alu	-2545	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
110044	chr19	1468951	1469950	+	0	NA	exon (NM_001351273, exon 14 of 14)	exon (NM_001351273, exon 14 of 14)	9765	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
194038	chr6	31842451	31843580	+	0	NA	Intergenic	AluSq2|SINE|Alu	5939	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
51932	chr12	53725251	53725550	+	0	NA	intron (NM_020898, intron 1 of 14)	intron (NM_020898, intron 1 of 14)	2052	NR_026554	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
39344	chr11	59416721	59417180	+	0	NA	Intergenic	Intergenic	6003	NM_001001954	219981		NM_001001954	ENSG00000172324	OR5A2	-	olfactory receptor family 5 subfamily A member 2	protein-coding
62152	chr13	97109771	97110280	+	0	NA	Intergenic	Intergenic	-31809	NM_001382671	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
238141	chrX	136747671	136748100	+	0	NA	intron (NM_004840, intron 2 of 21)	intron (NM_004840, intron 2 of 21)	19930	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
82061	chr16	13906771	13906930	+	0	NA	Intergenic	Intergenic	-13304	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
61556	chr13	61315151	61315290	+	0	NA	Intergenic	AluY|SINE|Alu	100302	NM_022843	64881		NM_022843	ENSG00000280165	PCDH20	PCDH13	protocadherin 20	protein-coding
2862	chr1	11295851	11296150	+	0	NA	3' UTR (NM_001330349, exon 3 of 3)	3' UTR (NM_001330349, exon 3 of 3)	22802	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
52421	chr12	55807301	55808180	+	0	NA	intron (NM_033082, intron 1 of 10)	AluY|SINE|Alu	9984	NM_033082	84324		NM_033082	ENSG00000205323	SARNP	CIP29|HCC1|HSPC316|THO1	SAP domain containing ribonucleoprotein	protein-coding
10331	chr1	64906371	64907050	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	59839	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
198175	chr6	95805171	95805330	+	0	NA	Intergenic	Intergenic	-210724	NM_006581	10690		NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding
19959	chr1	184882751	184883450	+	0	NA	intron (NM_052966, intron 5 of 13)	intron (NM_052966, intron 5 of 13)	91408	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
158587	chr3	4739571	4740080	+	0	NA	intron (NM_002222, intron 40 of 57)	MLT1G1|LTR|ERVL-MaLR	11765	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
61202	chr13	49437001	49437200	+	0	NA	intron (NM_001079670, intron 1 of 10)	intron (NM_001079670, intron 1 of 10)	6964	NM_001079670	81617		NM_030925	ENSG00000102547	CAB39L	MLAA-34|MO25-BETA|MO2L|bA103J18.3	calcium binding protein 39 like	protein-coding
203045	chr6	165847501	165847700	+	0	NA	Intergenic	Intergenic	-139951	NR_027284	441177		NM_001013720	ENSG00000281832	LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
17546	chr1	156797121	156797950	+	0	NA	intron (NM_005973, intron 6 of 6)	intron (NM_005973, intron 6 of 6)	-18215	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
23637	chr1	230542071	230542430	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	53333	NR_146479	101927553		NR_146479	ENSG00000232964	LINC01737	-	long intergenic non-protein coding RNA 1737	ncRNA
13744	chr1	116909851	116910930	+	0	NA	intron (NM_020440, intron 1 of 8)	CpG	474	NM_020440	5738		NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
235098	chrX	40418771	40419130	+	0	NA	Intergenic	MIRb|SINE|MIR	156033	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
165351	chr3	88219371	88219530	+	0	NA	Intergenic	LTR41|LTR|ERVL	69491	NM_173824	285237		NM_173824	ENSG00000179021	C3orf38	-	chromosome 3 open reading frame 38	protein-coding
47694	chr12	6421871	6422230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-22905	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
128823	chr2	63049371	63049600	+	0	NA	promoter-TSS (NM_001199770)	promoter-TSS (NM_001199770)	-250	NM_001199770	5013		NM_014562	ENSG00000115507	OTX1	-	orthodenticle homeobox 1	protein-coding
104694	chr17	81531021	81531830	+	0	NA	intron (NM_012418, intron 1 of 4)	intron (NM_012418, intron 1 of 4)	3048	NM_012418	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
206161	chr7	28005901	28006100	+	0	NA	intron (NM_175061, intron 1 of 4)	MIR|SINE|MIR	-174457	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
16033	chr1	152219871	152220480	+	0	NA	exon (NM_001009931, exon 3 of 3)	exon (NM_001009931, exon 3 of 3)	4018	NM_001009931	388697		NM_001009931	ENSG00000197915	HRNR	FLG3|S100A16|S100a18	hornerin	protein-coding
210538	chr7	100245351	100245650	+	0	NA	intron (NR_166147, intron 1 of 4)	intron (NR_166147, intron 1 of 4)	26252	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
53278	chr12	64218471	64219450	+	0	NA	intron (NM_001300941, intron 1 of 2)	intron (NM_001300941, intron 1 of 2)	3336	NM_152440	144577		NM_152440	ENSG00000174206	KICS2	C12orf66	KICSTOR subunit 2	protein-coding
123108	chr19	51656901	51657250	+	0	NA	Intergenic	Intergenic	-10256	NM_001098612	100049587		NM_001098612	ENSG00000254415	SIGLEC14	-	sialic acid binding Ig like lectin 14	protein-coding
151517	chr21	46430171	46430330	+	0	NA	intron (NM_006031, intron 36 of 46)	intron (NM_006031, intron 36 of 46)	-28641	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
111597	chr19	4093971	4094480	+	0	NA	intron (NM_030662, intron 10 of 10)	intron (NM_030662, intron 10 of 10)	-27326	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
215472	chr7	158331671	158331850	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	201053	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
93520	chr17	19020801	19021000	+	0	NA	TTS (NM_001270649)	TTS (NM_001270649)	-16136	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
112464	chr19	6387871	6388030	+	0	NA	intron (NM_002096, intron 4 of 12)	AluSx1|SINE|Alu	1753	NR_106945	102465533		NR_106945	ENSG00000274390	MIR6885	hsa-mir-6885	microRNA 6885	ncRNA
20964	chr1	202348001	202349950	+	0	NA	exon (NM_002481, exon 1 of 24)	exon (NM_002481, exon 1 of 24)	273	NM_001167857	4660		NM_002481	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1 regulatory subunit 12B	protein-coding
142714	chr20	8602651	8603400	+	0	NA	intron (NM_015192, intron 3 of 31)	intron (NM_015192, intron 3 of 31)	-228160	NR_004386	26767		NR_004386	ENSG00000201348	RNU105B	105B|E1-2	RNA, U105B small nucleolar	snoRNA
87662	chr16	74595251	74595800	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluY|SINE|Alu	11589	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
152052	chr22	19629821	19630250	+	0	NA	Intergenic	Intergenic	-63196	NR_024381	150185		NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
145923	chr20	46010301	46011100	+	0	NA	intron (NM_004994, intron 3 of 12)	CpG	1792	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
223439	chr8	143968501	143969150	+	0	NA	intron (NM_000445, intron 2 of 32)	L1MB8|LINE|L1	4704	NM_201378	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
104793	chr17	81725851	81726150	+	0	NA	Intergenic	AluSq2|SINE|Alu	13716	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
67441	chr14	70658571	70659850	+	0	NA	intron (NM_015351, intron 1 of 2)	L1MD1|LINE|L1	17294	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
141761	chr2	241984851	241985770	+	0	NA	intron (NR_110220, intron 3 of 3)	CpG	14627	NR_110592	102723927		NR_110592	ENSG00000237940	LINC01238	-	long intergenic non-protein coding RNA 1238	ncRNA
183980	chr5	88827151	88827530	+	0	NA	promoter-TSS (NM_001364342)	promoter-TSS (NM_001364342)	-152	NM_001364341	4208		NM_002397	ENSG00000081189	MEF2C	C5DELq14.3|DEL5q14.3|NEDHSIL	myocyte enhancer factor 2C	protein-coding
33325	chr10	115587151	115587250	+	0	NA	intron (NM_207303, intron 26 of 28)	L1PA3|LINE|L1	493835	NM_207303	26033		NM_207303	ENSG00000107518	ATRNL1	ALP|bA338L11.1|bA454H24.1	attractin like 1	protein-coding
111411	chr19	3773021	3773480	+	0	NA	Intergenic	L2a|LINE|L2	-1022	NM_032753	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
151491	chr21	46320351	46320880	+	0	NA	intron (NM_001286477, intron 1 of 7)	LTR62|LTR|ERVL	210	NM_001286462	54058		NM_058180	ENSG00000160298	C21orf58	-	chromosome 21 open reading frame 58	protein-coding
39793	chr11	61957071	61957650	+	0	NA	intron (NR_134580, intron 5 of 10)	intron (NR_134580, intron 5 of 10)	2125	NM_001363591	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
33473	chr10	119069101	119069300	+	0	NA	intron (NM_003750, intron 6 of 21)	MER20|DNA|hAT-Charlie	-9062	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
189268	chr5	172066321	172067230	+	0	NA	intron (NM_005990, intron 12 of 18)	AluSz|SINE|Alu	-60137	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
139606	chr2	225026021	225026780	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	-15860	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
122746	chr19	50098901	50099830	+	0	NA	Intergenic	Intergenic	-1419	NR_024242	100191063		NR_024242		SNAR-A14	-	small NF90 (ILF3) associated RNA A14	snRNA
28947	chr10	63221401	63221600	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	47723	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
239100	chrY	10987771	10987930	+	0	NA	Intergenic	Intergenic	1077052	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
159038	chr3	11271801	11273230	+	0	NA	intron (NM_001349236, intron 1 of 17)	intron (NM_001349236, intron 1 of 17)	118	NM_001144912	10533		NM_006395	ENSG00000197548	ATG7	APG7-LIKE|APG7L|GSA7|SCAR31	autophagy related 7	protein-coding
3619	chr1	16369551	16370700	+	0	NA	intron (NR_073500, intron 1 of 1)	MIRb|SINE|MIR	2883	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
118481	chr19	35905621	35906330	+	0	NA	intron (NM_003332, intron 4 of 4)	AluSg|SINE|Alu	2320	NM_198125	7305		NM_003332	ENSG00000011600	TYROBP	DAP12|KARAP|PLOSL|PLOSL1	transmembrane immune signaling adaptor TYROBP	protein-coding
192043	chr6	16486251	16487030	+	0	NA	intron (NM_000332, intron 6 of 8)	intron (NM_000332, intron 6 of 8)	248053	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
174679	chr4	41882421	41883150	+	0	NA	promoter-TSS (NR_104143)	promoter-TSS (NR_104143)	-174	NR_104143	101927074		NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA
184303	chr5	96878171	96878330	+	0	NA	intron (NM_001329229, intron 1 of 17)	intron (NM_001329229, intron 1 of 17)	1750	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
142613	chr20	5597801	5598200	+	0	NA	intron (NM_019593, intron 3 of 19)	intron (NM_019593, intron 3 of 19)	13006	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
436	chr1	1107921	1108830	+	0	NA	intron (NM_017891, intron 1 of 9)	intron (NM_017891, intron 1 of 9)	7714	NM_017891	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
207406	chr7	44257651	44258750	+	0	NA	intron (NM_172080, intron 4 of 19)	(CACATG)n|Simple_repeat|Simple_repeat	57222	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
141490	chr2	241101571	241103150	+	0	NA	promoter-TSS (NM_182501)	promoter-TSS (NM_182501)	-28	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
221525	chr8	124657321	124657980	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	70823	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
196202	chr6	42749001	42749400	+	0	NA	intron (NM_001318819, intron 1 of 13)	L1MC5|LINE|L1	2213	NM_001318819	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
151760	chr22	17981551	17982330	+	0	NA	promoter-TSS (NR_030378)	promoter-TSS (NR_030378)	-979	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
190870	chr6	2158671	2158830	+	0	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	17241	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
24064	chr1	235311751	235312200	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-15241	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
139956	chr2	230868221	230868750	+	0	NA	intron (NM_001012514, intron 1 of 4)	(CA)n|Simple_repeat|Simple_repeat	3535	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
215565	chr7	158814421	158815380	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	14609	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
29001	chr10	63388251	63388950	+	0	NA	intron (NM_001322258, intron 1 of 24)	L1M2|LINE|L1	-15552	NR_031566	100302150		NR_031566	ENSG00000221063	MIR1296	MIRN1296|hsa-mir-1296|mir-1296	microRNA 1296	ncRNA
190345	chr5	179676351	179676650	+	0	NA	Intergenic	AluSx1|SINE|Alu	4534	NM_001164444	646019		NM_001164444	ENSG00000204659	CBY3	-	chibby family member 3	protein-coding
213453	chr7	138797801	138798080	+	0	NA	promoter-TSS (NM_001085429)	promoter-TSS (NM_001085429)	-54	NM_001085429	155006		NM_001085429	ENSG00000214128	TMEM213	-	transmembrane protein 213	protein-coding
56285	chr12	112164101	112164300	+	0	NA	promoter-TSS (NR_106921)	promoter-TSS (NR_106921)	-879	NR_106921	102465519		NR_106921	ENSG00000283793	MIR6861	hsa-mir-6861	microRNA 6861	ncRNA
209860	chr7	90348401	90348600	+	0	NA	intron (NM_033107, intron 1 of 9)	Tigger2|DNA|TcMar-Tigger	1784	NM_001042717	85865		NM_033107	ENSG00000105793	GTPBP10	ObgH2|UG0751c10	GTP binding protein 10	protein-coding
52320	chr12	54959221	54959680	+	0	NA	intron (NR_147064, intron 10 of 11)	L1MCa|LINE|L1	14282	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
159974	chr3	17774371	17775530	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	32006	NR_135536	105376975		NR_135536	ENSG00000286352	LOC105376975	-	uncharacterized LOC105376975	ncRNA
194529	chr6	33305001	33305280	+	0	NA	exon (NM_003190, exon 4 of 8).3	exon (NM_003190, exon 4 of 8).3	-5752	NM_001243738	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
3937	chr1	17958671	17959030	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-106807	NR_125946	101927876		NR_125946	ENSG00000261781	LINC01654	-	long intergenic non-protein coding RNA 1654	ncRNA
188619	chr5	157204651	157205250	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	24110	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
181560	chr5	43136071	43136630	+	0	NA	intron (NM_001330717, intron 3 of 7)	L1MB1|LINE|L1	14785	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
195712	chr6	38876451	38876950	+	0	NA	intron (NM_001371, intron 52 of 91)	HAL1|LINE|L1	76407	NR_038401	100131047		NR_038401		DNAH8-AS1	-	DNAH8 antisense RNA 1	ncRNA
85533	chr16	53067551	53067850	+	0	NA	non-coding (NR_168111, exon 2 of 5)	non-coding (NR_168111, exon 2 of 5)	12709	NR_168120	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
189296	chr5	172117251	172117650	+	0	NA	intron (NM_005990, intron 4 of 18)	intron (NM_005990, intron 4 of 18)	70774	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
34148	chr10	128057371	128057730	+	0	NA	TTS (NR_136149)	TTS (NR_136149)	4875	NR_136150	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
49018	chr12	14259971	14260630	+	0	NA	Intergenic	Intergenic	-105332	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
20328	chr1	197738901	197739200	+	0	NA	intron (NM_001300858, intron 2 of 15)	L1MEc|LINE|L1	36430	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
75908	chr15	70083721	70084480	+	0	NA	intron (NM_001282982, intron 2 of 17)	MIR3|SINE|MIR	-4632	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
38399	chr11	44937951	44938250	+	0	NA	intron (NM_006034, intron 2 of 6)	intron (NM_006034, intron 2 of 6)	12060	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
84489	chr16	30488451	30488780	+	0	NA	intron (NM_002209, intron 9 of 30)	AluSx|SINE|Alu	-15304	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
236665	chrX	76253451	76253750	+	0	NA	Intergenic	Intergenic	80538	NM_016500	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
31876	chr10	100204301	100204900	+	0	NA	exon (NM_001320928, exon 13 of 21)	exon (NM_001320928, exon 13 of 21)	-18571	NM_001347857	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
184009	chr5	91059551	91059650	+	0	NA	intron (NR_003149, intron 85 of 89)	intron (NR_003149, intron 85 of 89)	254802	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
175937	chr4	80437851	80438550	+	0	NA	intron (NM_001206997, intron 2 of 6)	L2a|LINE|L2	102470	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
34841	chr11	312001	312680	+	0	NA	Intergenic	Intergenic	-1700	NM_003641	8519		NM_003641	ENSG00000185885	IFITM1	9-27|CD225|DSPA2a|IFI17|LEU13	interferon induced transmembrane protein 1	protein-coding
86366	chr16	66551201	66551800	+	0	NA	Intergenic	Intergenic	-1063	NM_181641	51192		NM_016326	ENSG00000217555	CKLF	C32|CKLF1|CKLF2|CKLF3|CKLF4|HSPC224|UCK-1	chemokine like factor	protein-coding
192349	chr6	24497171	24497830	+	0	NA	intron (NM_170740, intron 1 of 10)	LTR12F|LTR|ERV1	2531	NM_001368954	7915		NM_001080	ENSG00000112294	ALDH5A1	SSADH|SSDH	aldehyde dehydrogenase 5 family member A1	protein-coding
70020	chr14	100088251	100088550	+	0	NA	intron (NM_016337, intron 2 of 13)	Tigger3a|DNA|TcMar-Tigger	21114	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
181689	chr5	50575171	50575330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-90681	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
68847	chr14	91291371	91291930	+	0	NA	intron (NM_001080414, intron 23 of 29)	MER102a|DNA|hAT-Charlie	-37770	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
221847	chr8	128267471	128267880	+	0	NA	Intergenic	Intergenic	117559	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
11350	chr1	89610061	89611230	+	0	NA	Intergenic	MER52D|LTR|ERV1	22249	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
133225	chr2	113185771	113186230	+	0	NA	exon (NM_012455, exon 5 of 17)	exon (NM_012455, exon 5 of 17)	12029	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
22013	chr1	209860271	209860880	+	0	NA	Intergenic	Intergenic	32603	NM_014388	27042		NM_014388	ENSG00000117597	UTP25	C1orf107|DEF|DIEXF|DJ434O14.5	UTP25 small subunit processome component	protein-coding
236801	chrX	79154871	79155630	+	0	NA	intron (NM_032553, intron 1 of 2)	intron (NM_032553, intron 1 of 2)	10562	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
181717	chr5	50672401	50673200	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	5386	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
225151	chr9	33777471	33777650	+	0	NA	intron (NM_001197098, intron 1 of 4)	AluYf1|SINE|Alu	-18001	NM_002771	5646		NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	serine protease 3	protein-coding
98738	chr17	48029751	48030050	+	0	NA	intron (NM_016429, intron 6 of 8)	AluSx|SINE|Alu	-2982	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
215104	chr7	155295601	155295800	+	0	NA	Intergenic	Intergenic	-2072	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
60864	chr13	45807671	45807830	+	0	NA	intron (NM_198849, intron 1 of 1)	intron (NM_198849, intron 1 of 1)	44003	NM_198849	283514		NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
5462	chr1	25625501	25625700	+	0	NA	intron (NM_020379, intron 1 of 11)	AluJr|SINE|Alu	8809	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
15417	chr1	150257801	150258900	+	0	NA	intron (NM_012113, intron 1 of 10)	intron (NM_012113, intron 1 of 10)	576	NM_012113	23632		NM_012113	ENSG00000118298	CA14	CAXiV	carbonic anhydrase 14	protein-coding
235066	chrX	40157971	40158830	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	18877	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
169426	chr3	161305321	161305680	+	0	NA	Intergenic	L1MD2|LINE|L1	66583	NM_001040100	165679		NM_145035	ENSG00000196542	SPTSSB	ADMP|C3orf57|SSSPTB	serine palmitoyltransferase small subunit B	protein-coding
93671	chr17	19234371	19234750	+	0	NA	Intergenic	Intergenic	-2817	NM_014964	22905		NM_014964	ENSG00000072134	EPN2	EHB21	epsin 2	protein-coding
89657	chr16	89355801	89356000	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	35448	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
80548	chr16	2787421	2788280	+	0	NA	promoter-TSS (NM_001385462)	promoter-TSS (NM_001385462)	65	NM_001385464	260429		NM_152891	ENSG00000103355	PRSS33	EOS	serine protease 33	protein-coding
1599	chr1	3627721	3627980	+	0	NA	intron (NM_182752, intron 4 of 4)	MER3|DNA|hAT-Charlie	2835	NM_182752	127262		NM_182752	ENSG00000158109	TPRG1L	FAM79A|SVAP30|TPRGL|h-mover|mover	tumor protein p63 regulated 1 like	protein-coding
188787	chr5	157828051	157828530	+	0	NA	intron (NM_001195556, intron 1 of 11)	intron (NM_001195556, intron 1 of 11)	30855	NM_014666	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
158806	chr3	9704001	9705850	+	0	NA	exon (NM_001308388, exon 4 of 20)	exon (NM_001308388, exon 4 of 20)	1092	NM_153635	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
127579	chr2	42663101	42663800	+	0	NA	intron (NM_001330444, intron 8 of 15)	intron (NM_001330444, intron 8 of 15)	94818	NM_001330443	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
5735	chr1	26430671	26430980	+	0	NA	Intergenic	Intergenic	-1457	NM_001319959	79947		NM_024887	ENSG00000117682	DHDDS	CIT|CPT|DEDSM|DS|HDS|RP59|hCIT	dehydrodolichyl diphosphate synthase subunit	protein-coding
27210	chr10	28606021	28606500	+	0	NA	intron (NM_016628, intron 7 of 13)	AluJb|SINE|Alu	-71261	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
58916	chr13	19736451	19736550	+	0	NA	intron (NM_001354909, intron 5 of 8)	AluYm1|SINE|Alu	46445	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
98569	chr17	47711021	47711630	+	0	NA	3' UTR (NM_014726, exon 9 of 9)	3' UTR (NM_014726, exon 9 of 9)	16061	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
74920	chr15	63675201	63675400	+	0	NA	intron (NM_003922, intron 37 of 77)	intron (NM_003922, intron 37 of 77)	-74473	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
165678	chr3	101868051	101868430	+	0	NA	Intergenic	AluJr|SINE|Alu	18726	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
33095	chr10	110914721	110914980	+	0	NA	intron (NM_001195304, intron 2 of 4)	intron (NM_001195304, intron 2 of 4)	4086	NM_001195306	92482		NM_001195304	ENSG00000214413	BBIP1	BBIP10|BBS18|NCRNA00081|bA348N5.3	BBSome interacting protein 1	protein-coding
55631	chr12	107066751	107067050	+	0	NA	intron (NM_004075, intron 1 of 12)	AluJb|SINE|Alu	26649	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
51639	chr12	53005421	53008000	+	0	NA	intron (NM_001300821, intron 1 of 14)	CpG	254	NM_001330654	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
180280	chr5	1807001	1807300	+	0	NA	intron (NM_004553, intron 2 of 3)	(GAGGTACTCA)n|Simple_repeat|Simple_repeat	5743	NM_004553	4726		NM_004553	ENSG00000145494	NDUFS6	CI-13kA|CI-13kD-A|CI13KDA|MC1DN9	NADH:ubiquinone oxidoreductase subunit S6	protein-coding
187052	chr5	140038221	140038750	+	0	NA	intron (NM_013981, intron 1 of 9)	intron (NM_013981, intron 1 of 9)	4814	NM_004883	9542		NM_004883	ENSG00000158458	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
174646	chr4	40672701	40673480	+	0	NA	Intergenic	Intergenic	-42496	NM_001371114	54502		NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
236307	chrX	68503851	68504750	+	0	NA	intron (NM_001195214, intron 1 of 5)	MER77B|LTR|ERVL	5249	NM_173834	286451		NM_173834	ENSG00000181704	YIPF6	FinGER6|YIPFalpha3|Yip4	Yip1 domain family member 6	protein-coding
106309	chr18	12881271	12882130	+	0	NA	intron (NM_080422, intron 1 of 9)	intron (NM_080422, intron 1 of 9)	2537	NM_002828	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
217896	chr8	37884571	37884930	+	0	NA	intron (NM_025151, intron 1 of 4)	AluSz|SINE|Alu	14747	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
232022	chr9	133369301	133370400	+	0	NA	intron (NM_001280791, intron 1 of 5)	intron (NM_001280791, intron 1 of 5)	6210	NM_033161	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
113320	chr19	8585821	8586480	+	0	NA	exon (NM_001282352, exon 9 of 13)	exon (NM_001282352, exon 9 of 13)	6046	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
135619	chr2	168181771	168181930	+	0	NA	intron (NM_013233, intron 2 of 17)	intron (NM_013233, intron 2 of 17)	65745	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
35666	chr11	1869501	1870080	+	0	NA	promoter-TSS (NM_001289005)	promoter-TSS (NM_001289005)	-462	NM_001289005	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
205617	chr7	22402321	22402580	+	0	NA	Intergenic	Intergenic	-45296	NM_012294	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
160455	chr3	30199101	30199330	+	0	NA	Intergenic	Intergenic	-265059	NR_046556	100873977		NR_046556	ENSG00000235593	RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
8279	chr1	39954771	39956330	+	0	NA	intron (NM_001287808, intron 1 of 11)	CpG	405	NM_001349822	84879		NM_032793	ENSG00000168389	MFSD2A	HsMFSD2A|MCPH15|MFSD2|NEDMISBA|NLS1|SLC59A1	MFSD2 lysolipid transporter A, lysophospholipid	protein-coding
33060	chr10	110875051	110875500	+	0	NA	intron (NM_145341, intron 1 of 12)	intron (NM_145341, intron 1 of 12)	3347	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
171025	chr3	195110471	195110830	+	0	NA	intron (NM_001308069, intron 3 of 3)	(GT)n|Simple_repeat|Simple_repeat	16062	NR_104188	100874528		NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
73433	chr15	43132901	43134530	+	0	NA	non-coding (NR_144542, exon 1 of 13)	non-coding (NR_144542, exon 1 of 13)	129	NM_024956	80021		NM_024956	ENSG00000137842	TMEM62	-	transmembrane protein 62	protein-coding
29873	chr10	72637401	72637780	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-11399	NM_001363513	10367		NM_006077	ENSG00000107745	MICU1	CALC|CBARA1|EFHA3|MPXPS|ara CALC	mitochondrial calcium uptake 1	protein-coding
122779	chr19	50310951	50311250	+	0	NA	TTS (NM_004977)	TTS (NM_004977)	17971	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
63547	chr14	20305401	20306200	+	0	NA	intron (NM_138376, intron 1 of 9)	intron (NM_138376, intron 1 of 9)	151	NM_138376	91875		NM_138376	ENSG00000136319	TTC5	NEDCAFD|Strap	tetratricopeptide repeat domain 5	protein-coding
186799	chr5	139374901	139375530	+	0	NA	intron (NM_152685, intron 13 of 14)	intron (NM_152685, intron 13 of 14)	8082	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
40954	chr11	65333511	65335450	+	0	NA	intron (NM_001330308, intron 1 of 11)	intron (NM_001330308, intron 1 of 11)	628	NM_001330308	5977		NM_006268	ENSG00000133884	DPF2	CSS7|REQ|SMARCG2|UBID4|ubi-d4	double PHD fingers 2	protein-coding
129302	chr2	68520551	68521200	+	0	NA	intron (NM_173545, intron 5 of 9)	L1PB1|LINE|L1	53290	NM_173545	200558		NM_173545	ENSG00000169621	APLF	APFL|C2orf13|PALF|Xip1|ZCCHH1	aprataxin and PNKP like factor	protein-coding
92004	chr17	7450601	7451350	+	0	NA	intron (NM_000747, intron 7 of 10)	AluSq10|SINE|Alu	5914	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
112008	chr19	4981571	4981880	+	0	NA	intron (NM_001370093, intron 1 of 11)	intron (NM_001370093, intron 1 of 11)	12612	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
180334	chr5	6631351	6631730	+	0	NA	intron (NM_001193455, intron 2 of 17)	intron (NM_001193455, intron 2 of 17)	1504	NM_017755	54888		NM_017755	ENSG00000037474	NSUN2	MISU|MRT5|SAKI|TRM4	NOP2/Sun RNA methyltransferase 2	protein-coding
202927	chr6	160399671	160399830	+	0	NA	intron (NM_021977, intron 2 of 10)	L1MC1|LINE|L1	51372	NM_021977	6581		NM_021977	ENSG00000146477	SLC22A3	EMT|EMTH|OCT3	solute carrier family 22 member 3	protein-coding
132929	chr2	111435051	111436080	+	0	NA	intron (NR_024373, intron 1 of 1)	GA-rich|Low_complexity|Low_complexity	59596	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
195441	chr6	36967101	36967800	+	0	NA	TTS (NR_130739)	TTS (NR_130739)	12712	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
2694	chr1	10634601	10635130	+	0	NA	Intergenic	Intergenic	159915	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
107122	chr18	35077371	35077530	+	0	NA	intron (NR_046177, intron 2 of 6)	intron (NR_046177, intron 2 of 6)	36037	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
219639	chr8	80172521	80172950	+	0	NA	Intergenic	Intergenic	-1171	NM_001025253	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
89912	chr16	89707771	89708180	+	0	NA	intron (NM_004913, intron 14 of 14)	intron (NM_004913, intron 14 of 14)	-3881	NR_036480	100128881		NR_036480	ENSG00000261373	VPS9D1-AS1	MYU	VPS9D1 antisense RNA 1	ncRNA
44542	chr11	108048401	108048600	+	0	NA	intron (NM_003478, intron 3 of 18)	MLT1H|LTR|ERVL-MaLR	39602	NM_003478	8065		NM_003478	ENSG00000166266	CUL5	CUL-5|VACM-1|VACM1	cullin 5	protein-coding
38197	chr11	36383501	36383900	+	0	NA	intron (NM_024841, intron 2 of 9)	AluSx1|SINE|Alu	7715	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
180001	chr5	960701	960900	+	0	NA	Intergenic	Intergenic	36540	NR_104614	100506688		NM_001242737	ENSG00000215246	LINC02982	-	long intergenic non-protein coding RNA 2982	ncRNA
64191	chr14	23008121	23008400	+	0	NA	intron (NM_001130706, intron 1 of 7)	intron (NM_001130706, intron 1 of 7)	1883	NM_001130708	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
42171	chr11	67826451	67826780	+	0	NA	Intergenic	Intergenic	-21279	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
62588	chr13	99997221	99997930	+	0	NA	non-coding (NR_047483, exon 1 of 1)	non-coding (NR_047483, exon 1 of 1)	334	NR_047483	100861542		NR_047483	ENSG00000260738	LINC00554	lncZic2	long intergenic non-protein coding RNA 554	ncRNA
205789	chr7	23679821	23681250	+	0	NA	intron (NM_001300932, intron 1 of 5)	intron (NM_001300932, intron 1 of 5)	336	NM_001300932	340277		NM_199136	ENSG00000188732	FAM221A	C7orf46	family with sequence similarity 221 member A	protein-coding
190521	chr5	180590771	180590930	+	0	NA	intron (NM_052863, intron 1 of 2)	CpG-22959	649	NM_052863	92304		NM_052863	ENSG00000161055	SCGB3A1	HIN-1|HIN1|LU105|PnSP-2|UGRP2	secretoglobin family 3A member 1	protein-coding
135787	chr2	169798651	169800330	+	0	NA	5' UTR (NM_001294145, exon 1 of 12)	5' UTR (NM_001294145, exon 1 of 12)	188	NM_001294145	6741		NM_003142	ENSG00000138385	SSB	LARP3|La|La/SSB	small RNA binding exonuclease protection factor La	protein-coding
62312	chr13	99041671	99042300	+	0	NA	intron (NM_001318849, intron 1 of 54)	MLT1D|LTR|ERVL-MaLR	-26200	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
136231	chr2	174597351	174598650	+	0	NA	promoter-TSS (NM_001375834)	promoter-TSS (NM_001375834)	-196	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
217437	chr8	28513971	28514530	+	0	NA	intron (NM_017412, intron 3 of 7)	intron (NM_017412, intron 3 of 7)	-9068	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	ncRNA
221341	chr8	123159521	123159830	+	0	NA	intron (NM_001363151, intron 19 of 19)	AluSp|SINE|Alu	-19372	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
174990	chr4	49655501	49656230	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	669223	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
170358	chr3	184568721	184569830	+	0	NA	intron (NM_004443, intron 1 of 15)	CpG	7490	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
93869	chr17	21033201	21033600	+	0	NA	intron (NM_015276, intron 1 of 12)	intron (NM_015276, intron 1 of 12)	9611	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
64898	chr14	35394951	35396030	+	0	NA	Intergenic	Intergenic	9259	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
42878	chr11	73332451	73332750	+	0	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	-23239	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
234218	chrX	12978061	12979100	+	0	NA	Intergenic	Intergenic	3470	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
94619	chr17	29830521	29830780	+	0	NA	intron (NM_033389, intron 1 of 14)	L2b|LINE|L2	-69218	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
176443	chr4	89287551	89287650	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	20200	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
44054	chr11	95227101	95227630	+	0	NA	intron (NM_001271594, intron 1 of 8)	AluSc|SINE|Alu	-2821	NR_110295	100129203		NR_110295	ENSG00000245552	LOC100129203	-	uncharacterized LOC100129203	ncRNA
170671	chr3	187725201	187725400	+	0	NA	intron (NM_001706, intron 8 of 9)	intron (NM_001706, intron 8 of 9)	9607	NM_001134738	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
36554	chr11	6617801	6618700	+	0	NA	intron (NM_000391, intron 3 of 12)	intron (NM_000391, intron 3 of 12)	1172	NM_000391	1200		NM_000391	ENSG00000166340	TPP1	CLN2|GIG1|LPIC|SCAR7|TPP-1	tripeptidyl peptidase 1	protein-coding
143470	chr20	31056601	31056800	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-200964	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
37498	chr11	18406401	18406900	+	0	NA	intron (NM_005566, intron 7 of 7)	AluSq2|SINE|Alu	-5656	NM_002301	3948		NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
108416	chr18	69940921	69941580	+	0	NA	intron (NM_001303619, intron 1 of 4)	THE1C-int|LTR|ERVL-MaLR	6623	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
127546	chr2	42339171	42339600	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	20653	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
130925	chr2	87484471	87485130	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	14850	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
229653	chr9	124291671	124292350	+	0	NA	promoter-TSS (NM_001166170)	promoter-TSS (NM_001166170)	39	NM_001166170	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
24998	chr10	3185571	3185730	+	0	NA	Intergenic	LTR1E|LTR|ERV1	-12809	NM_001242307	10531		NM_014889	ENSG00000107959	PITRM1	MP1|PreP|SCAR30	pitrilysin metallopeptidase 1	protein-coding
132194	chr2	101980351	101980650	+	0	NA	Intergenic	Intergenic	-2965	NR_103791	100506328		NR_103791		LINC01127	-	long intergenic non-protein coding RNA 1127	ncRNA
91792	chr17	7019921	7020530	+	0	NA	promoter-TSS (NR_038310)	promoter-TSS (NR_038310)	-571	NR_038310	100506755		NR_038310	ENSG00000267532	MIR497HG	MIR195HG	mir-497-195 cluster host gene	ncRNA
111742	chr19	4360651	4361230	+	0	NA	TTS (NM_001300862)	TTS (NM_001300862)	17378	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
4723	chr1	23340451	23340550	+	0	NA	intron (NM_001102397, intron 1 of 9).2	intron (NM_001102397, intron 1 of 9).2	3784	NM_001297622	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
37105	chr11	13285201	13285600	+	0	NA	intron (NR_147787, intron 1 of 19)	L2a|LINE|L2	7610	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
101486	chr17	67564221	67564900	+	0	NA	intron (NM_181671, intron 4 of 9)	Ricksha_c|DNA|MULE-MuDR	-92975	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
215	chr1	822601	822800	+	0	NA	Intergenic	Intergenic	4822	NR_024321	79854		NM_024796		LINC00115	NCRNA00115	long intergenic non-protein coding RNA 115	ncRNA
36042	chr11	2927651	2928180	+	0	NA	TTS (NM_003311)	TTS (NM_003311)	1505	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
237299	chrX	115864951	115865400	+	0	NA	intron (NR_147172, intron 2 of 2)	CpG	24211	NR_147172	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
229903	chr9	126581901	126582100	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-31928	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
107297	chr18	44757971	44758130	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	57175	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
6684	chr1	29147371	29147530	+	0	NA	TTS (NM_005626)	TTS (NM_005626)	-23547	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
161141	chr3	38655701	38656000	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-6163	NM_198056	6331		NM_000335	ENSG00000183873	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	sodium voltage-gated channel alpha subunit 5	protein-coding
153471	chr22	25420701	25421680	+	0	NA	Intergenic	CpG	-15782	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
98820	chr17	48374401	48374950	+	0	NA	intron (NM_001075099, intron 2 of 12)	intron (NM_001075099, intron 2 of 12)	55539	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
90243	chr17	754101	754300	+	0	NA	non-coding (NR_024120, exon 1 of 1)	non-coding (NR_024120, exon 1 of 1)	1867	NR_024120	100131454		NR_024120	ENSG00000293440	DBIL5P	ELP2P	diazepam binding inhibitor-like 5, pseudogene	pseudo
192376	chr6	24712001	24712680	+	0	NA	intron (NM_030939, intron 3 of 4)	AluSz6|SINE|Alu	6814	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
165857	chr3	105868101	105869900	+	0	NA	promoter-TSS (NM_001321798)	promoter-TSS (NM_001321798)	12	NM_001321799	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
52090	chr12	54082401	54083580	+	0	NA	intron (NR_026655, intron 1 of 1)	intron (NR_026655, intron 1 of 1)	-1167	NR_026658	100240735		NR_026658	ENSG00000291180	LOC100240735	-	uncharacterized LOC100240735	ncRNA
41537	chr11	66284651	66284950	+	0	NA	TTS (NR_073078)	TTS (NR_073078)	4343	NM_001300861	10897		NM_020470	ENSG00000174851	YIF1A	54TM|FinGER7|YIF1|YIF1P	Yip1 interacting factor homolog A, membrane trafficking protein	protein-coding
154107	chr22	31088701	31090150	+	0	NA	intron (NR_168475, intron 6 of 20)	intron (NR_168475, intron 6 of 20)	4429	NM_001207018	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
69973	chr14	99821701	99822450	+	0	NA	intron (NM_001375412, intron 1 of 20)	MamRTE1|LINE|RTE-BovB	28662	NM_001375412	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
71836	chr15	22203051	22203350	+	0	NA	Intergenic	Intergenic	22129	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
106003	chr18	7946751	7947130	+	0	NA	promoter-TSS (NM_001378145)	promoter-TSS (NM_001378145)	65	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
229754	chr9	125179471	125179830	+	0	NA	intron (NM_001123369, intron 1 of 5)	AluSx1|SINE|Alu	10153	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
219701	chr8	80895401	80895630	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-20734	NM_001033723	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
95989	chr17	39194101	39194700	+	0	NA	intron (NM_199247, intron 2 of 12)	intron (NM_199247, intron 2 of 12)	3269	NM_199248	782		NM_000723	ENSG00000067191	CACNB1	CAB1|CACNLB1|CCHLB1	calcium voltage-gated channel auxiliary subunit beta 1	protein-coding
207094	chr7	39988851	39989150	+	0	NA	intron (NM_003718, intron 2 of 13)	AluSx1|SINE|Alu	38640	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
91981	chr17	7417071	7417330	+	0	NA	exon (NM_020795, exon 7 of 7)	exon (NM_020795, exon 7 of 7)	-3124	NM_199339	374768		NM_199339	ENSG00000181323	SPEM1	C17orf83	spermatid maturation 1	protein-coding
20098	chr1	186865371	186865530	+	0	NA	intron (NM_024420, intron 2 of 17)	intron (NM_024420, intron 2 of 17)	36501	NM_024420	5321		NM_024420	ENSG00000116711	PLA2G4A	GURDP|PLA2G4|cPLA2|cPLA2-alpha	phospholipase A2 group IVA	protein-coding
217868	chr8	37841171	37842580	+	0	NA	exon (NM_032777, exon 19 of 19)	exon (NM_032777, exon 19 of 19)	7986	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
200888	chr6	138985371	138985880	+	0	NA	intron (NM_031922, intron 1 of 19)	intron (NM_031922, intron 1 of 19)	2628	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
70365	chr14	101884971	101885530	+	0	NA	intron (NM_178587, intron 5 of 11)	intron (NM_178587, intron 5 of 11)	75387	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
116519	chr19	18169721	18169980	+	0	NA	non-coding (NR_073517, exon 16 of 16)	non-coding (NR_073517, exon 16 of 16)	-3963	NM_006332	10437		NM_006332	ENSG00000216490	IFI30	GILT|IFI-30|IP-30|IP30	IFI30 lysosomal thiol reductase	protein-coding
156599	chr22	41540151	41540480	+	0	NA	intron (NM_138338, intron 3 of 6)	MIR3|SINE|MIR	4155	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
21796	chr1	207052601	207053880	+	0	NA	promoter-TSS (NM_006212)	promoter-TSS (NM_006212)	-35	NM_006212	5208		NM_006212	ENSG00000123836	PFKFB2	PFK-2/FBPase-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding
113577	chr19	10267451	10268100	+	0	NA	Intergenic	AluSz|SINE|Alu	-3345	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
102242	chr17	75252451	75252950	+	0	NA	intron (NM_001291641, intron 1 of 17)	LTR7B|LTR|ERV1	8906	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
128241	chr2	54503051	54503350	+	0	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	-26022	NR_002229	56969		NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
82425	chr16	16308601	16308830	+	0	NA	Intergenic	Intergenic	-1160	NR_036144	100422836		NR_036144	ENSG00000266291	MIR3180-3	-	microRNA 3180-3	ncRNA
52065	chr12	54033201	54033590	+	0	NA	promoter-TSS (NR_030753)	promoter-TSS (NR_030753)	345	NM_018953	3222		NM_018953	ENSG00000172789	HOXC5	CP11|HOX3|HOX3D	homeobox C5	protein-coding
162459	chr3	48477751	48480080	+	0	NA	intron (NM_016479, intron 3 of 5)	intron (NM_016479, intron 3 of 5)	-5757	NM_001272083	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
7933	chr1	37513871	37515230	+	0	NA	intron (NR_073091, intron 1 of 7)	CpG	216	NM_001270876	64769		NM_022756	ENSG00000163875	MEAF6	C1orf149|CENP-28|EAF6|NY-SAR-91	MYST/Esa1 associated factor 6	protein-coding
134388	chr2	136376101	136377200	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-258501	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
120775	chr19	45434451	45434750	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluSx3|SINE|Alu	-2054	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
38029	chr11	35143841	35144600	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	5049	NM_001001391	960		NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECM-III|ECMR-III|H-CAM|HCELL|HUTCH-1|HUTCH-I|Hermes-1|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (IN blood group)	protein-coding
921	chr1	1706501	1707330	+	0	NA	intron (NR_132739, intron 11 of 19)	intron (NR_132739, intron 11 of 19)	6976	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
147514	chr20	59187051	59187150	+	0	NA	intron (NM_178457, intron 1 of 5)	MER63B|DNA|hAT-Blackjack	23279	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
232944	chr9	136940671	136940830	+	0	NA	3' UTR (NM_018998, exon 9 of 9)	3' UTR (NM_018998, exon 9 of 9)	3988	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
151336	chr21	45618421	45618730	+	0	NA	Intergenic	Intergenic	24921	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
57293	chr12	121646201	121646600	+	0	NA	Intergenic	AluY|SINE|Alu	19850	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
177972	chr4	139043151	139043250	+	0	NA	exon (NM_012118, exon 2 of 3)	exon (NM_012118, exon 2 of 3)	27419	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
70390	chr14	101949921	101950930	+	0	NA	Intergenic	Intergenic	-14148	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
95238	chr17	35349201	35349600	+	0	NA	TTS (NM_001104590)	TTS (NM_001104590)	24221	NM_001376010	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
53758	chr12	68667371	68667530	+	0	NA	3' UTR (NM_015646, exon 8 of 8)	3' UTR (NM_015646, exon 8 of 8)	19409	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
82373	chr16	16021971	16022330	+	0	NA	intron (NM_004996, intron 5 of 30)	intron (NM_004996, intron 5 of 30)	72534	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
56496	chr12	116264701	116265100	+	0	NA	intron (NM_015335, intron 1 of 30)	FLAM_A|SINE|Alu	12793	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
183687	chr5	80713471	80713830	+	0	NA	intron (NM_002439, intron 8 of 23)	intron (NM_002439, intron 8 of 23)	-58667	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
164406	chr3	58488271	58488630	+	0	NA	Intergenic	Intergenic	-3646	NM_001128214	200845		NM_153331	ENSG00000168301	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
223849	chr9	62601	63650	+	0	NA	Intergenic	Intergenic	-9565	NR_121188	101929127		NR_121188	ENSG00000277631	PGM5P3-AS1	FAM233B	PGM5P3 antisense RNA 1	ncRNA
110643	chr19	2232471	2233230	+	0	NA	TTS (NM_018049)	TTS (NM_018049)	1299	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
91596	chr17	5255251	5255350	+	0	NA	Intergenic	Intergenic	-20440	NM_001271842	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
13821	chr1	117619171	117619580	+	0	NA	intron (NM_017709, intron 1 of 1)	L1ME4b|LINE|L1	13327	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
4345	chr1	20633901	20634950	+	0	NA	TTS (NR_106732)	TTS (NR_106732)	746	NR_106732	102464833		NR_106732	ENSG00000284005	MIR6084	hsa-mir-6084	microRNA 6084	ncRNA
92192	chr17	7834801	7836500	+	0	NA	Intergenic	CpG	-4256	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
127742	chr2	43578671	43578830	+	0	NA	intron (NR_144316, intron 8 of 36)	MIRb|SINE|MIR	17224	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
135802	chr2	169846871	169847030	+	0	NA	intron (NM_172070, intron 1 of 38)	AluJb|SINE|Alu	19496	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
170945	chr3	194333471	194334100	+	0	NA	Intergenic	CpG	17543	NM_001080513	1370		NM_001309	ENSG00000178772	CPN2	ACBP	carboxypeptidase N subunit 2	protein-coding
25269	chr10	6108621	6109680	+	0	NA	intron (NM_001145547, intron 6 of 11)	intron (NM_001145547, intron 6 of 11)	19804	NM_001145547	84991		NM_032905	ENSG00000134453	RBM17	SPF45	RNA binding motif protein 17	protein-coding
21261	chr1	204388271	204388630	+	0	NA	Intergenic	Intergenic	-18731	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
111546	chr19	4038121	4038400	+	0	NA	3' UTR (NM_015897, exon 11 of 11)	3' UTR (NM_015897, exon 11 of 11)	27269	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
126152	chr2	26190521	26190780	+	0	NA	TTS (NM_001191033)	TTS (NM_001191033)	9934	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
74422	chr15	59100751	59101050	+	0	NA	Intergenic	Intergenic	-4246	NM_004701	9133		NM_004701	ENSG00000157456	CCNB2	HsT17299	cyclin B2	protein-coding
13128	chr1	111646551	111647280	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-17879	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
48759	chr12	11228301	11228550	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	41282	NM_006249	5544		NM_006249	ENSG00000197870	PRB3	G1|PRG	proline rich protein BstNI subfamily 3	protein-coding
37733	chr11	31798601	31799180	+	0	NA	intron (NM_001368908, intron 5 of 10)	CpG	1771	NM_001368930	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
68648	chr14	89954301	89955200	+	0	NA	promoter-TSS (NM_001284268)	promoter-TSS (NM_001284268)	-20	NM_145231	90141		NM_145231	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
94311	chr17	28751171	28752580	+	0	NA	TTS (NM_004295)	TTS (NM_004295)	7864	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
228401	chr9	99150201	99151250	+	0	NA	3' UTR (NM_001306210, exon 9 of 9)	3' UTR (NM_001306210, exon 9 of 9)	45612	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
239157	chrY	11534021	11534300	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	887430	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
166704	chr3	120598651	120598980	+	0	NA	intron (NM_004547, intron 1 of 2)	L2a|LINE|L2	2479	NM_001168331	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
202402	chr6	157868951	157869250	+	0	NA	intron (NM_016224, intron 2 of 17)	intron (NM_016224, intron 2 of 17)	45854	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
218454	chr8	48011321	48011580	+	0	NA	intron (NM_003350, intron 1 of 3)	AluSx|SINE|Alu	3019	NM_003350	7336		NM_003350	ENSG00000169139	UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin conjugating enzyme E2 V2	protein-coding
109159	chr19	244901	245100	+	0	NA	Intergenic	Intergenic	-42791	NR_028324	399844		NM_001004321		LINC01002	-	long intergenic non-protein coding RNA 1002	ncRNA
60374	chr13	40935421	40935830	+	0	NA	intron (NM_001370329, intron 9 of 9)	intron (NM_001370329, intron 9 of 9)	-13851	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
34212	chr10	129532871	129533030	+	0	NA	intron (NM_002412, intron 1 of 4)	intron (NM_002412, intron 1 of 4)	65709	NM_002412	4255		NM_002412	ENSG00000170430	MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
212725	chr7	129829301	129830750	+	0	NA	TTS (NM_001202498)	TTS (NM_001202498)	-55011	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
120466	chr19	44722121	44722780	+	0	NA	Intergenic	Intergenic	23299	NM_001039213	388551		NM_001039213	ENSG00000213892	CEACAM16	CEAL2|DFNA4B|DFNB113	CEA cell adhesion molecule 16, tectorial membrane component	protein-coding
98075	chr17	45519271	45519630	+	0	NA	non-coding (NR_002940, exon 1 of 6)	non-coding (NR_002940, exon 1 of 6)	1073	NR_002940	55073		NM_018001		LRRC37A4P	LRRC37|LRRC37A4	leucine rich repeat containing 37 member A4, pseudogene	pseudo
89858	chr16	89614551	89614850	+	0	NA	intron (NM_001128141, intron 1 of 10)	AluY|SINE|Alu	1392	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
51331	chr12	51351801	51352400	+	0	NA	3' UTR (NM_007210, exon 12 of 12)	3' UTR (NM_007210, exon 12 of 12)	-5421	NM_001971	1990		NM_001971	ENSG00000139610	CELA1	ELA1	chymotrypsin like elastase 1	protein-coding
55339	chr12	103960251	103960830	+	0	NA	Intergenic	L1ME1|LINE|L1	-3325	NM_001135570	728568		NM_001135570	ENSG00000204954	UQCC6	BR|BRAWNIN|C12orf73	ubiquinol-cytochrome c reductase complex assembly factor 6	protein-coding
221868	chr8	128376871	128377480	+	0	NA	Intergenic	LTR12D|LTR|ERV1	187504	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
172588	chr4	2478201	2478400	+	0	NA	intron (NM_001185009, intron 2 of 8)	THE1B-int|LTR|ERVL-MaLR	8847	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
30835	chr10	86411151	86412130	+	0	NA	Intergenic	Intergenic	-44845	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
22196	chr1	212412901	212413180	+	0	NA	intron (NM_001377479, intron 1 of 7)	MIRb|SINE|MIR	1846	NR_165303	55248		NM_018252	ENSG00000065600	PACC1	ASOR|C1orf75|PAC|PAORAC|TMEM206|hPAC|hTMEM206	proton activated chloride channel 1	protein-coding
193258	chr6	29953001	29954300	+	0	NA	Intergenic	AluSx|SINE|Alu	11118	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
215828	chr8	6679421	6679780	+	0	NA	intron (NR_125386, intron 1 of 4)	MIR3|SINE|MIR	28609	NR_125386	100507530		NR_125386		MCPH1-AS1	-	MCPH1 antisense RNA 1	ncRNA
137938	chr2	201117301	201118000	+	0	NA	promoter-TSS (NM_001351591)	promoter-TSS (NM_001351591)	-841	NR_147255	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
166953	chr3	125312101	125312700	+	0	NA	intron (NM_001348424, intron 5 of 9)	intron (NM_001348424, intron 5 of 9)	44880	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
75162	chr15	64639051	64639750	+	0	NA	intron (NM_015042, intron 3 of 9)	MLT1C|LTR|ERVL-MaLR	63881	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
21592	chr1	206508751	206508850	+	0	NA	intron (NM_182663, intron 1 of 5)	intron (NM_182663, intron 1 of 5)	1269	NM_182663	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
13783	chr1	117349501	117349700	+	0	NA	Intergenic	Intergenic	-17849	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
199509	chr6	118697451	118697800	+	0	NA	intron (NM_001178035, intron 1 of 13)	ERVL-E-int|LTR|ERVL	12450	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
194738	chr6	33859351	33859650	+	0	NA	Intergenic	Intergenic	37407	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
99680	chr17	50755771	50756230	+	0	NA	3' UTR (NM_016424, exon 10 of 10)	3' UTR (NM_016424, exon 10 of 10)	11518	NM_001358683	55018		NM_017928	ENSG00000167117	ANKRD40CL	C17orf73|LINC00483	ANKRD40 C-terminal like	protein-coding
110744	chr19	2335071	2336330	+	0	NA	intron (NM_152988, intron 2 of 14)	intron (NM_152988, intron 2 of 14)	7016	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
31366	chr10	93700701	93700900	+	0	NA	intron (NM_001347714, intron 1 of 13)	intron (NM_001347714, intron 1 of 13)	1772	NM_001347713	118924		NM_145246	ENSG00000148690	FRA10AC1	C10orf4|F26C11.1-like|FRA10A|NEDGFC	FRA10A associated CGG repeat 1	protein-coding
60	chr1	273151	273730	+	0	NA	Intergenic	Intergenic	-66843	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
86876	chr16	67973721	67974180	+	0	NA	Intergenic	AluJb|SINE|Alu	-5256	NM_001145962	6560		NM_005072	ENSG00000124067	SLC12A4	CTC-479C5.17|KCC1|hKCC1	solute carrier family 12 member 4	protein-coding
63289	chr13	113973501	113975230	+	0	NA	promoter-TSS (NM_001365455)	promoter-TSS (NM_001365455)	-289	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
156320	chr22	40648571	40648730	+	0	NA	Intergenic	Intergenic	-11931	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
157056	chr22	42585171	42585430	+	0	NA	non-coding (NR_103820, exon 9 of 9)	non-coding (NR_103820, exon 9 of 9)	-3289	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
122797	chr19	50358501	50359630	+	0	NA	exon (NM_004851, exon 8 of 9)	exon (NM_004851, exon 8 of 9)	6574	NM_004851	9476		NM_004851	ENSG00000131400	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
146321	chr20	49221151	49222730	+	0	NA	intron (NM_017895, intron 2 of 20)	intron (NM_017895, intron 2 of 20)	2524	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
69062	chr14	91893771	91893930	+	0	NA	intron (NM_001384161, intron 6 of 12)	intron (NM_001384161, intron 6 of 12)	-26314	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
166603	chr3	119241401	119242980	+	0	NA	intron (NR_046574, intron 3 of 3)	SVA_B|Retroposon|SVA	-1312	NM_212543	8702		NM_003778	ENSG00000121578	B4GALT4	B4Gal-T4|beta4Gal-T4	beta-1,4-galactosyltransferase 4	protein-coding
189029	chr5	169583401	169584600	+	0	NA	promoter-TSS (NM_001329640)	promoter-TSS (NM_001329640)	-80	NM_001329640	54908		NM_017785	ENSG00000040275	SPDL1	CCDC99	spindle apparatus coiled-coil protein 1	protein-coding
93177	chr17	17799651	17800050	+	0	NA	intron (NM_030665, intron 3 of 5)	intron (NM_030665, intron 3 of 5)	13695	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
89151	chr16	88524251	88524350	+	0	NA	intron (NR_148997, intron 2 of 3)	intron (NR_148997, intron 2 of 3)	6753	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
158969	chr3	10247821	10251280	+	0	NA	exon (NM_014760, exon 2 of 8)	exon (NM_014760, exon 2 of 8)	1091	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
96913	chr17	42139021	42139680	+	0	NA	intron (NM_201434, intron 1 of 6)	intron (NM_201434, intron 1 of 6)	15639	NM_201434	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
140159	chr2	231612421	231612990	+	0	NA	Intergenic	Intergenic	19841	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
213188	chr7	132485321	132486300	+	0	NA	intron (NM_181775, intron 4 of 4)	intron (NM_181775, intron 4 of 4)	90660	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
186777	chr5	139344051	139344150	+	0	NA	intron (NM_001033112, intron 1 of 3)	MIR|SINE|MIR	1666	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
63938	chr14	22059121	22059430	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	373478	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
76305	chr15	74364901	74365100	+	0	NA	intron (NM_000781, intron 1 of 8)	intron (NM_000781, intron 1 of 8)	1194	NM_001099773	1583		NM_000781	ENSG00000140459	CYP11A1	CYP11A|CYPXIA1|P450SCC	cytochrome P450 family 11 subfamily A member 1	protein-coding
201225	chr6	143561971	143562130	+	0	NA	promoter-TSS (NR_110149)	promoter-TSS (NR_110149)	1	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
3986	chr1	18909021	18909880	+	0	NA	intron (NM_001136265, intron 8 of 8)	THE1C|LTR|ERVL-MaLR	-6651	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
917	chr1	1701671	1702600	+	0	NA	TTS (NR_002946).2	TTS (NR_002946).2	2196	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
183719	chr5	80999721	80999980	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-38943	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
49634	chr12	28223071	28223530	+	0	NA	intron (NM_001352080, intron 2 of 13)	intron (NM_001352080, intron 2 of 13)	-32562	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
2021	chr1	7549371	7549530	+	0	NA	intron (NM_001349608, intron 5 of 21)	intron (NM_001349608, intron 5 of 21)	-120280	NM_001349614	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
181332	chr5	40391651	40391950	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-288115	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
67057	chr14	67704501	67704930	+	0	NA	intron (NM_152443, intron 1 of 8)	intron (NM_152443, intron 1 of 8)	2829	NM_152443	145226		NM_152443	ENSG00000139988	RDH12	LCA13|RP53|SDR7C2	retinol dehydrogenase 12	protein-coding
234120	chrX	9643951	9644700	+	0	NA	intron (NM_001139467, intron 3 of 16)	intron (NM_001139467, intron 3 of 16)	121522	NM_000273	4935		NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
50350	chr12	47178021	47178280	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	-9662	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
77253	chr15	81311001	81311200	+	0	NA	non-coding (NR_135013, exon 5 of 5)	non-coding (NR_135013, exon 5 of 5)	13041	NR_135013	80765		NM_030574	ENSG00000172345	STARD5	-	StAR related lipid transfer domain containing 5	protein-coding
73798	chr15	48331901	48332880	+	0	NA	exon (NM_001025249, exon 2 of 7)	exon (NM_001025249, exon 2 of 7)	193	NM_001948	1854		NM_001948	ENSG00000128951	DUT	BMFDMS|dUTPase	deoxyuridine triphosphatase	protein-coding
221896	chr8	128591101	128591980	+	0	NA	Intergenic	Intergenic	-26861	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
134626	chr2	144415671	144416030	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-82781	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
76456	chr15	74838421	74838750	+	0	NA	intron (NM_001284365, intron 10 of 15)	intron (NM_001284365, intron 10 of 15)	2122	NR_106942	102465531		NR_106942	ENSG00000275411	MIR6882	hsa-mir-6882	microRNA 6882	ncRNA
41948	chr11	67312601	67313500	+	0	NA	TTS (NM_017857)	TTS (NM_017857)	-4789	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
177294	chr4	109590701	109591500	+	0	NA	intron (NM_017918, intron 1 of 7)	HAL1|LINE|L1	30854	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
153519	chr22	26547151	26547830	+	0	NA	intron (NM_003595, intron 1 of 6)	MIRb|SINE|MIR	7833	NR_031615	100313914		NR_031615	ENSG00000221760	MIR548J	MIRN548J|hsa-mir-548j	microRNA 548j	ncRNA
113599	chr19	10286571	10288050	+	0	NA	TTS (NM_000201)	TTS (NM_000201)	355	NM_001544	3386		NM_001544	ENSG00000105371	ICAM4	CD242|LW	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	protein-coding
22358	chr1	214678451	214678550	+	0	NA	Intergenic	Intergenic	75305	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
23838	chr1	234607801	234608700	+	0	NA	intron (NM_001077397, intron 1 of 1)	intron (NM_001077397, intron 1 of 1)	1275	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
79478	chr16	763421	764700	+	0	NA	exon (NM_013404, exon 5 of 17)	exon (NM_013404, exon 5 of 17)	2987	NM_013404	10232		NM_005823	ENSG00000102854	MSLN	MPF|SMRP	mesothelin	protein-coding
156577	chr22	41516471	41517000	+	0	NA	intron (NM_001098, intron 6 of 17)	AluSx|SINE|Alu	27735	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
125184	chr2	10097051	10097700	+	0	NA	Intergenic	Intergenic	-16964	NM_001037160	192668		NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
137074	chr2	190910421	190910800	+	0	NA	intron (NM_014905, intron 7 of 17)	intron (NM_014905, intron 7 of 17)	29789	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
196185	chr6	42659171	42659580	+	0	NA	intron (NM_001363705, intron 29 of 46)	AluSx3|SINE|Alu	63222	NM_000322	5961		NM_000322	ENSG00000112619	PRPH2	AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2	peripherin 2	protein-coding
123824	chr19	55207171	55208450	+	0	NA	intron (NM_001161440, intron 1 of 17)	MSR1|Satellite|Satellite	1691	NM_002842	5794		NM_002842	ENSG00000080031	PTPRH	R-PTP-H|SAP1	protein tyrosine phosphatase receptor type H	protein-coding
216255	chr8	12429821	12430080	+	0	NA	intron (NR_148877, intron 2 of 4).2	AluSx4|SINE|Alu	6348	NR_148878	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
61523	chr13	59678121	59678450	+	0	NA	intron (NM_001042517, intron 27 of 27)	intron (NM_001042517, intron 27 of 27)	-334433	NR_109838	100874195		NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
189247	chr5	172004801	172005220	+	0	NA	intron (NM_001378978, intron 1 of 13)	intron (NM_001378978, intron 1 of 13)	1628	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
8119	chr1	39218051	39218700	+	0	NA	intron (NM_012090, intron 1 of 92)	MIR3|SINE|MIR	134208	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
72050	chr15	28794201	28794500	+	0	NA	intron (NR_037599, intron 3 of 13)	intron (NR_037599, intron 3 of 13)	4516	NR_037599	646278		NR_037599		PDCD6IPP2	-	PDCD6IP pseudogene 2	pseudo
142155	chr20	2814601	2814800	+	0	NA	promoter-TSS (NM_080739)	promoter-TSS (NM_080739)	-287	NM_001256538	128653		NM_080739	ENSG00000258713	C20orf141	dJ860F19.4	chromosome 20 open reading frame 141	protein-coding
189323	chr5	172153021	172153480	+	0	NA	intron (NM_005990, intron 2 of 18)	AluSp|SINE|Alu	34974	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
34724	chr10	133647171	133647850	+	0	NA	Intergenic	LTR43-int|LTR|ERV1	-20715	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
23131	chr1	226700601	226701200	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-25832	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
131045	chr2	88269771	88270330	+	0	NA	Intergenic	Intergenic	99704	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
49353	chr12	22287701	22288600	+	0	NA	intron (NM_001304450, intron 1 of 3)	intron (NM_001304450, intron 1 of 3)	46564	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
108325	chr18	63844271	63844430	+	0	NA	Intergenic	L1MC4|LINE|L1	-43355	NM_002575	5055		NM_002575	ENSG00000197632	SERPINB2	HsT1201|PAI|PAI-2|PAI2|PLANH2	serpin family B member 2	protein-coding
1370	chr1	2515271	2515430	+	0	NA	intron (NM_018216, intron 10 of 18).2	intron (NM_018216, intron 10 of 18).2	11246	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
105162	chr17	82261871	82262300	+	0	NA	intron (NM_139062, intron 2 of 9)	intron (NM_139062, intron 2 of 9)	11615	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
41771	chr11	66834121	66834950	+	0	NA	intron (NM_001302084, intron 12 of 14)	intron (NM_001302084, intron 12 of 14)	-8906	NM_005133	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
45779	chr11	119283571	119283730	+	0	NA	intron (NM_005188, intron 9 of 15)	AluYk3|SINE|Alu	29362	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
44746	chr11	111996851	111996950	+	0	NA	intron (NM_033425, intron 13 of 15)	intron (NM_033425, intron 13 of 15)	19591	NM_033425	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
7702	chr1	36082001	36082450	+	0	NA	Intergenic	MIR|SINE|MIR	-1869	NM_014466	27285		NM_014466	ENSG00000092850	TEKT2	TEKTB1|TEKTIN-T|h-tektin-t	tektin 2	protein-coding
95055	chr17	32558351	32558750	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	71557	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
172949	chr4	3526701	3527830	+	0	NA	intron (NM_002337, intron 1 of 7)	intron (NM_002337, intron 1 of 7)	4884	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
202174	chr6	155471221	155471480	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-15511	NM_015718	50508		NM_015718	ENSG00000074771	NOX3	GP91-3|MOX-2	NADPH oxidase 3	protein-coding
195337	chr6	36621201	36621800	+	0	NA	TTS (NR_037491)	TTS (NR_037491)	1012	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
165214	chr3	72875651	72875830	+	0	NA	Intergenic	AluJb|SINE|Alu	-12306	NR_138564	727936		NM_001080393	ENSG00000172986	GXYLT2	GLT8D4	glucoside xylosyltransferase 2	protein-coding
18409	chr1	161439971	161440680	+	0	NA	Intergenic	CpG	-65132	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
136423	chr2	176284751	176284930	+	0	NA	intron (NM_001006635, intron 2 of 10)	intron (NM_001006635, intron 2 of 10)	15398	NM_001319097	10651		NM_006554	ENSG00000128654	MTX2	MDPS|metaxin-2	metaxin 2	protein-coding
59315	chr13	24300671	24300830	+	0	NA	intron (NM_153023, intron 11 of 11)	intron (NM_153023, intron 11 of 11)	-6416	NM_001303138	338872		NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and TNF related 9	protein-coding
14345	chr1	143978421	143978750	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-5066	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
120498	chr19	44768651	44769250	+	0	NA	Intergenic	AluJo|SINE|Alu	-8919	NM_001130852	23624		NM_012116	ENSG00000142273	CBLC	CBL-3|CBL-SL|RNF57	Cbl proto-oncogene C	protein-coding
221437	chr8	124021901	124022100	+	0	NA	intron (NM_001039112, intron 17 of 40)	intron (NM_001039112, intron 17 of 40)	18782	NR_040044	439941		NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
217341	chr8	27613901	27615000	+	0	NA	intron (NM_001831, intron 1 of 8)	CpG	250	NM_001831	1191		NM_001831	ENSG00000120885	CLU	AAG4|APO-J|APOJ|CLI|CLU1|CLU2|KUB1|NA1/NA2|SGP-2|SGP2|SP-40|TRPM-2|TRPM2	clusterin	protein-coding
116471	chr19	18097071	18098370	+	0	NA	promoter-TSS (NM_015016)	promoter-TSS (NM_015016)	-58	NM_015016	23031		NM_015016	ENSG00000099308	MAST3	DEE108	microtubule associated serine/threonine kinase 3	protein-coding
210729	chr7	100618421	100618680	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	6010	NM_001040099	64598		NM_023948	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
237277	chrX	111102551	111102650	+	0	NA	promoter-TSS (NR_136748)	promoter-TSS (NR_136748)	-559	NR_136748	5063		NM_002578	ENSG00000077264	PAK3	ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|XLID30|bPAK|beta-PAK	p21 (RAC1) activated kinase 3	protein-coding
107279	chr18	44637471	44637830	+	0	NA	Intergenic	MIRc|SINE|MIR	-42423	NM_001379141	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
175630	chr4	76211521	76212180	+	0	NA	intron (NM_001204255, intron 1 of 8)	intron (NM_001204255, intron 1 of 8)	1974	NM_001204255	950		NM_005506	ENSG00000138760	SCARB2	AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII	scavenger receptor class B member 2	protein-coding
2346	chr1	9238151	9238250	+	0	NA	intron (NM_004285, intron 1 of 4)	L2a|LINE|L2	-1647	NM_001282587	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
19085	chr1	170929801	170930030	+	0	NA	Intergenic	Intergenic	-5556	NM_001163629	80133		NM_025063	ENSG00000117501	MROH9	ARMC11|C1orf129	maestro heat like repeat family member 9	protein-coding
202620	chr6	158742371	158742730	+	0	NA	intron (NM_001318745, intron 8 of 14)	L1MEg|LINE|L1	22203	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
190958	chr6	2931771	2932530	+	0	NA	Intergenic	Intergenic	-28841	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
194390	chr6	32995821	32996080	+	0	NA	Intergenic	L1MC5a|LINE|L1	13641	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
234773	chrX	23790871	23791430	+	0	NA	Intergenic	Intergenic	7992	NM_002970	6303		NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
102126	chr17	75048551	75048650	+	0	NA	intron (NM_015353, intron 1 of 5)	intron (NM_015353, intron 1 of 5)	1375	NM_015353	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
195831	chr6	41336351	41337080	+	0	NA	intron (NM_001199510, intron 2 of 5)	intron (NM_001199510, intron 2 of 5)	1107	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
222088	chr8	130416751	130416850	+	0	NA	intron (NM_001362924, intron 1 of 30)	intron (NM_001362924, intron 1 of 30)	26860	NM_001362924	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
233486	chr9	137845901	137846150	+	0	NA	Intergenic	Intergenic	7606	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	ncRNA
214721	chr7	151017831	151020000	+	0	NA	exon (NM_001317056, exon 6 of 14)	exon (NM_001317056, exon 6 of 14)	5584	NM_001317056	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
45259	chr11	117998651	117999200	+	0	NA	non-coding (NR_026691, exon 8 of 8)	non-coding (NR_026691, exon 8 of 8)	12531	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
41251	chr11	65817371	65819000	+	0	NA	Intergenic	CpG	-15778	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
82863	chr16	21527401	21527600	+	0	NA	Intergenic	Intergenic	-7056	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
80306	chr16	2270751	2270850	+	0	NA	promoter-TSS (NR_037448)	promoter-TSS (NR_037448)	87	NR_037448	100500812		NR_037448	ENSG00000266643	MIR3677	mir-3677	microRNA 3677	ncRNA
159127	chr3	12630671	12631030	+	0	NA	intron (NM_001354691, intron 1 of 16)	AluSx|SINE|Alu	32658	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
195516	chr6	37207501	37208380	+	0	NA	Intergenic	L2a|LINE|L2	37788	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
28538	chr10	50527171	50527850	+	0	NA	intron (NM_147156, intron 2 of 10)	MIR|SINE|MIR	96446	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
46645	chr11	128691601	128691980	+	0	NA	non-coding (NR_038908, exon 3 of 3)	non-coding (NR_038908, exon 3 of 3)	-2126	NM_001167681	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
174697	chr4	42401051	42401350	+	0	NA	exon (NM_001080505, exon 2 of 2)	exon (NM_001080505, exon 2 of 2)	3712	NM_001080505	152573		NM_001080505	ENSG00000178343	SHISA3	hShisa3	shisa family member 3	protein-coding
190608	chr5	181174401	181175380	+	0	NA	Intergenic	L1M4|LINE|L1	17018	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
52579	chr12	56173871	56174430	+	0	NA	intron (NM_003075, intron 16 of 27)	L2c|LINE|L2	15333	NM_001130420	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
217847	chr8	37747471	37748450	+	0	NA	promoter-TSS (NR_003671)	promoter-TSS (NR_003671)	86	NR_003671	728024		NR_003671		LOC728024	-	STING1 ER exit protein 1 pseudogene	pseudo
28769	chr10	62043771	62044550	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-5197	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
42924	chr11	73396951	73397250	+	0	NA	3' UTR (NM_032871, exon 11 of 11)	3' UTR (NM_032871, exon 11 of 11)	20432	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
176833	chr4	102566251	102566630	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-63954	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
70875	chr14	103819471	103819630	+	0	NA	intron (NM_015316, intron 1 of 16)	L2a|LINE|L2	28025	NM_015316	23368		NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
81042	chr16	4310771	4310930	+	0	NA	Intergenic	AluJb|SINE|Alu	-3911	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
212892	chr7	130884471	130885130	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-7261	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
237026	chrX	102711871	102712750	+	0	NA	promoter-TSS (NM_001350269)	promoter-TSS (NM_001350269)	134	NM_001184874	114928		NM_138437	ENSG00000158301	GPRASP2	DFNX7|GASP2	G protein-coupled receptor associated sorting protein 2	protein-coding
6548	chr1	28642071	28644780	+	0	NA	promoter-TSS (NM_001135218)	promoter-TSS (NM_001135218)	169	NR_146730	105378616		NR_146730	ENSG00000229388	TAF12-DT	LINC01715	TAF12 divergent transcript	ncRNA
10639	chr1	70210651	70211000	+	0	NA	intron (NM_001350606, intron 1 of 12)	intron (NM_001350606, intron 1 of 12)	5129	NM_001190987	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
32946	chr10	110387971	110388650	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-83390	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
229115	chr9	114401171	114401330	+	0	NA	TTS (NM_001173425)	TTS (NM_001173425)	-6845	NM_030767	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
205910	chr7	25389601	25389800	+	0	NA	Intergenic	Intergenic	-161214	NM_022150	64111		NM_022150	ENSG00000105954	NPVF	C7orf9|RFRP	neuropeptide VF precursor	protein-coding
234674	chrX	20248521	20248880	+	0	NA	intron (NM_004586, intron 1 of 21)	L1MD2|LINE|L1	18209	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
182056	chr5	55934371	55934530	+	0	NA	TTS (NR_120480)	TTS (NR_120480)	60513	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
173245	chr4	6956621	6956880	+	0	NA	intron (NM_001330638, intron 1 of 12)	intron (NM_001330638, intron 1 of 12)	2584	NM_001330638	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
105078	chr17	82101071	82102050	+	0	NA	TTS (NM_198082)	TTS (NM_198082)	-3324	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
77773	chr15	85840301	85840950	+	0	NA	Intergenic	Intergenic	14990	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
111579	chr19	4069421	4070400	+	0	NA	Intergenic	Intergenic	-3011	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
219382	chr8	70400771	70401220	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	2395	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
81554	chr16	9119751	9120050	+	0	NA	3' UTR (NM_014117, exon 4 of 4)	3' UTR (NM_014117, exon 4 of 4)	28256	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
18670	chr1	167128871	167129180	+	0	NA	3' UTR (NM_001080426, exon 6 of 6)	3' UTR (NM_001080426, exon 6 of 6)	34950	NM_001080426	92235		NM_001080426	ENSG00000198842	STYXL2	DUSP27	serine/threonine/tyrosine interacting like 2	protein-coding
98493	chr17	47253671	47254650	+	0	NA	intron (NM_000212, intron 1 of 14)	CpG	333	NM_000212	3690		NM_000212	ENSG00000259207	ITGB3	BDPLT16|BDPLT2|BDPLT24|CD61|GP3A|GPIIIa|GT|GT2	integrin subunit beta 3	protein-coding
224923	chr9	32589021	32589330	+	0	NA	Intergenic	Intergenic	-15991	NM_001199987	4712		NM_002493	ENSG00000165264	NDUFB6	B17|CI	NADH:ubiquinone oxidoreductase subunit B6	protein-coding
66804	chr14	64725301	64725800	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	21126	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
148356	chr20	63844671	63845300	+	0	NA	Intergenic	Intergenic	-13721	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
223876	chr9	237421	237880	+	0	NA	intron (NM_203447, intron 1 of 47)	AluJb|SINE|Alu	-21900	NR_160804	157983		NM_152569	ENSG00000183784	DOCK8-AS1	C9orf66	DOCK8 antisense RNA 1	ncRNA
236350	chrX	70398851	70399450	+	0	NA	intron (NM_012310, intron 22 of 30)	Charlie1a|DNA|hAT-Charlie	-23881	NM_001171192	54857		NM_017711	ENSG00000130055	GDPD2	GDE3|OBDPF	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding
146545	chr20	49981651	49981750	+	0	NA	Intergenic	Intergenic	-1280	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
18521	chr1	161792451	161792950	+	0	NA	intron (NM_007348, intron 6 of 15)	intron (NM_007348, intron 6 of 15)	26380	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
7739	chr1	36147401	36147800	+	0	NA	intron (NM_001270895, intron 1 of 4)	AluJb|SINE|Alu	1886	NM_014408	27095		NM_014408	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex subunit 3	protein-coding
15650	chr1	150781301	150781500	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-15622	NM_001199739	1520		NM_004079	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
107246	chr18	38934321	38934580	+	0	NA	Intergenic	L2a|LINE|L2	687725	NR_030628	100126323		NR_030628	ENSG00000283615	MIR924	MIRN924|hsa-mir-924	microRNA 924	ncRNA
105934	chr18	3591971	3592330	+	0	NA	intron (NM_001242765, intron 4 of 8)	intron (NM_001242765, intron 4 of 8)	-1964	NR_024101	649446		NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
89410	chr16	88853101	88853950	+	0	NA	intron (NM_001323544, intron 1 of 14)	intron (NM_001323544, intron 1 of 14)	-2695	NR_134671	51693		NM_016209	ENSG00000167515	TRAPPC2L	HSPC176|PERRB	trafficking protein particle complex subunit 2L	protein-coding
43692	chr11	85941301	85941630	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	86082	NM_001286159	220047		NM_173556	ENSG00000150676	CCDC83	CT148|HSD9|KP-CoT-23	coiled-coil domain containing 83	protein-coding
26904	chr10	26446171	26446700	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	8094	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
17742	chr1	158990871	158991030	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-9026	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
169315	chr3	158801621	158802680	+	0	NA	promoter-TSS (NM_001289407)	promoter-TSS (NM_001289407)	96	NM_001167903	64747		NM_022736	ENSG00000118855	MFSD1	Minerva|SMAP4	major facilitator superfamily domain containing 1	protein-coding
80937	chr16	3822601	3824200	+	0	NA	intron (NM_004380, intron 2 of 30)	intron (NM_004380, intron 2 of 30)	56720	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
197372	chr6	73476021	73476280	+	0	NA	intron (NM_133645, intron 4 of 12)	AluSz|SINE|Alu	14413	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
129781	chr2	71183151	71183450	+	0	NA	3' UTR (NM_020459, exon 4 of 4)	3' UTR (NM_020459, exon 4 of 4)	43803	NM_020459	400961		NM_020459	ENSG00000124374	PAIP2B	-	poly(A) binding protein interacting protein 2B	protein-coding
59233	chr13	23695621	23696480	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	116690	NM_001204458	55504		NM_018647	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	TNF receptor superfamily member 19	protein-coding
188802	chr5	158039421	158039500	+	0	NA	Intergenic	L2a|LINE|L2	-180315	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
42368	chr11	68751061	68752250	+	0	NA	promoter-TSS (NM_004923)	promoter-TSS (NM_004923)	-135	NM_004923	9633		NM_004923	ENSG00000132749	TESMIN	CXCDC2|MTL5|MTLT	testis expressed metallothionein like protein	protein-coding
177788	chr4	123102821	123103130	+	0	NA	intron (NM_001345856, intron 14 of 15)	intron (NM_001345856, intron 14 of 15)	179897	NM_001345856	166378		NM_145207	ENSG00000145375	AFG2A	AFG2|EHLMRS|NEDHSB|SPAF|SPATA5	AFG2 AAA ATPase homolog A	protein-coding
93379	chr17	18250901	18251630	+	0	NA	exon (NM_002018, exon 13 of 30)	exon (NM_002018, exon 13 of 30)	7473	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
144151	chr20	34048601	34048800	+	0	NA	promoter-TSS (NR_039911)	promoter-TSS (NR_039911)	-419	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
84814	chr16	31077701	31078300	+	0	NA	exon (NM_014699, exon 2 of 3)	exon (NM_014699, exon 2 of 3)	3578	NM_014699	9726		NM_014699	ENSG00000167395	ZNF646	-	zinc finger protein 646	protein-coding
154150	chr22	31274301	31274500	+	0	NA	intron (NM_005569, intron 14 of 15)	AluSx|SINE|Alu	18088	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
83664	chr16	28356751	28356850	+	0	NA	intron (NM_001282524, intron 1 of 6)	G-rich|Low_complexity|Low_complexity	6060	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
147963	chr20	62974271	62975080	+	0	NA	Intergenic	Intergenic	21966	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
172976	chr4	3984821	3985180	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-29572	NR_130740	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
165800	chr3	105809021	105809530	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	58316	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
146827	chr20	51404471	51405600	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	47942	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
55137	chr12	98607201	98607630	+	0	NA	Intergenic	AluSx1|SINE|Alu	7780	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
127597	chr2	42858451	42858550	+	0	NA	Intergenic	L2b|LINE|L2	-65917	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
13056	chr1	111447071	111447580	+	0	NA	intron (NR_133654, intron 2 of 8)	intron (NR_133654, intron 2 of 8)	1931	NM_024102	79084		NM_024102	ENSG00000116455	WDR77	HKMT1069|MEP-50|MEP50|Nbla10071|p44|p44/Mep50	WD repeat domain 77	protein-coding
235232	chrX	41380421	41381250	+	0	NA	Intergenic	Intergenic	46669	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
164094	chr3	56591101	56591500	+	0	NA	intron (NR_148371, intron 9 of 19)	intron (NR_148371, intron 9 of 19)	34125	NM_001141947	285331		NM_001012506	ENSG00000180376	CCDC66	-	coiled-coil domain containing 66	protein-coding
29363	chr10	69637001	69637200	+	0	NA	Intergenic	Intergenic	6853	NM_145306	219738		NM_145306	ENSG00000171224	FAM241B	C10orf35	family with sequence similarity 241 member B	protein-coding
17308	chr1	156452051	156452650	+	0	NA	Intergenic	AluSx|SINE|Alu	-22802	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
65403	chr14	50812001	50812480	+	0	NA	intron (NM_020921, intron 3 of 30)	MIRc|SINE|MIR	-9557	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
143335	chr20	25725701	25725900	+	0	NA	Intergenic	L1PB4|LINE|L1	-25408	NR_135006	105372582		NR_135006		LOC105372582	-	uncharacterized LOC105372582	ncRNA
68426	chr14	81218271	81218430	+	0	NA	intron (NM_201595, intron 1 of 8)	intron (NM_201595, intron 1 of 8)	2609	NM_001278940	2957		NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding
4929	chr1	23913201	23914080	+	0	NA	promoter-TSS (NM_001841)	promoter-TSS (NM_001841)	-278	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
40230	chr11	63563901	63564830	+	0	NA	promoter-TSS (NM_017878)	promoter-TSS (NM_017878)	-986	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
218040	chr8	38796821	38797730	+	0	NA	intron (NR_148050, intron 2 of 4)	MLT1F|LTR|ERVL-MaLR	-8175	NM_001352791	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
108541	chr18	74493551	74494590	+	0	NA	Intergenic	Intergenic	-2293	NM_001370249	55748		NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	carnosine dipeptidase 2	protein-coding
122542	chr19	49644721	49645200	+	0	NA	intron (NM_021228, intron 1 of 10)	intron (NM_021228, intron 1 of 10)	2751	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
179418	chr4	184267871	184268900	+	0	NA	Intergenic	L1M6|LINE|L1	-50512	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
84037	chr16	29548021	29548300	+	0	NA	intron (NR_135317, intron 10 of 11)	intron (NR_135317, intron 10 of 11)	-42286	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
127411	chr2	42105001	42106850	+	0	NA	Intergenic	Intergenic	57904	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
23720	chr1	231923021	231923280	+	0	NA	intron (NM_001164541, intron 9 of 9)	AluSc8|SINE|Alu	-2684	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
217525	chr8	29252221	29252550	+	0	NA	intron (NM_015254, intron 1 of 39)	intron (NM_015254, intron 1 of 39)	10685	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
124322	chr19	58100351	58101250	+	0	NA	intron (NM_001145542, intron 1 of 6)	AluSq4|SINE|Alu	-2437	NM_023926	65982		NM_023926	ENSG00000121413	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
119983	chr19	41907001	41907780	+	0	NA	TTS (NM_199002)	TTS (NM_199002)	21059	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
38691	chr11	46585071	46585230	+	0	NA	intron (NM_001367471, intron 1 of 18)	SVA_D|Retroposon|SVA	2294	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
80455	chr16	2678771	2679330	+	0	NA	Intergenic	Intergenic	-3473	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
64697	chr14	33839601	33839880	+	0	NA	Intergenic	Intergenic	111334	NM_001308103	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
42677	chr11	72594801	72595600	+	0	NA	intron (NM_001243784, intron 6 of 30)	intron (NM_001243784, intron 6 of 30)	19930	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
39438	chr11	60922871	60923230	+	0	NA	3' UTR (NM_024092, exon 4 of 4)	3' UTR (NM_024092, exon 4 of 4)	-1410	NM_017870	54972		NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
119212	chr19	39452151	39452250	+	0	NA	intron (NM_001111020, intron 2 of 29)	L2a|LINE|L2	6552	NM_003169	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
179685	chr4	190071771	190071930	+	0	NA	Intergenic	CpG	6621	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
159292	chr3	12982721	12983400	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	4041	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
90284	chr17	1009471	1009830	+	0	NA	intron (NM_001282149, intron 16 of 17).3	intron (NM_001282149, intron 16 of 17).3	12521	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
9204	chr1	45617821	45618650	+	0	NA	3' UTR (NM_002482, exon 15 of 15)	3' UTR (NM_002482, exon 15 of 15)	5819	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
48279	chr12	8787921	8788380	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-34471	NM_144670	144568		NM_144670	ENSG00000166535	A2ML1	CPAMD9|OMS|p170	alpha-2-macroglobulin like 1	protein-coding
153880	chr22	30275601	30276230	+	0	NA	Intergenic	Intergenic	-9064	NM_020530	5008		NM_020530	ENSG00000099985	OSM	-	oncostatin M	protein-coding
126017	chr2	25333821	25334480	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	-5429	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
145121	chr20	38806201	38806900	+	0	NA	intron (NM_001172735, intron 1 of 9)	CpG	853	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
204741	chr7	5568551	5568650	+	0	NA	Intergenic	AluSx|SINE|Alu	-24216	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
138240	chr2	202992821	202992900	+	0	NA	Intergenic	AluY|SINE|Alu	-22015	NM_001114132	65065		NM_198945	ENSG00000144426	NBEAL1	A530083I02Rik|ALS2CR16|ALS2CR17	neurobeachin like 1	protein-coding
123079	chr19	51388121	51388580	+	0	NA	promoter-TSS (NM_030657)	promoter-TSS (NM_030657)	-376	NM_001161748	3982		NM_030657	ENSG00000105370	LIM2	CTRCT19|MP17|MP19	lens intrinsic membrane protein 2	protein-coding
5770	chr1	26496951	26497600	+	0	NA	Intergenic	LTR16A|LTR|ERVL	24835	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
54696	chr12	93423051	93423730	+	0	NA	intron (NM_003348, intron 1 of 3)	intron (NM_003348, intron 1 of 3)	18557	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
112146	chr19	5617421	5618480	+	0	NA	intron (NM_014649, intron 2 of 20)	AluJo|SINE|Alu	4826	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
18903	chr1	168346071	168346630	+	0	NA	Intergenic	Intergenic	-29174	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
212640	chr7	129476301	129476500	+	0	NA	intron (NM_001134336, intron 18 of 19)	SVA_C|Retroposon|SVA	-26131	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
49514	chr12	25379451	25379750	+	0	NA	Intergenic	Intergenic	-128671	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
15926	chr1	151761671	151762130	+	0	NA	intron (NM_031420, intron 4 of 6)	intron (NM_031420, intron 4 of 6)	-1069	NM_001134939	51686		NM_016178	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
84944	chr16	31352921	31353380	+	0	NA	Intergenic	Intergenic	-2026	NM_001286375	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
206963	chr7	38299521	38300530	+	0	NA	Intergenic	Intergenic	-26378	NM_001003806	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
194489	chr6	33251521	33251780	+	0	NA	non-coding (NR_044997, exon 4 of 5)	non-coding (NR_044997, exon 4 of 5)	2114	NR_044997	414765		NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25	ncRNA
183635	chr5	80238051	80238530	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	17758	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
239012	chrY	2860571	2860730	+	0	NA	intron (NM_001008, intron 5 of 6)	L1MB2|LINE|L1	19048	NM_001008	6192		NM_001008	ENSG00000129824	RPS4Y1	RPS4Y|S4	ribosomal protein S4 Y-linked 1	protein-coding
88067	chr16	81468151	81468750	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	23280	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
58427	chr12	131926671	131926830	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-2526	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
215939	chr8	8338071	8338230	+	0	NA	intron (NR_163138, intron 5 of 6)	intron (NR_163138, intron 5 of 6)	48094	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
207827	chr7	50327601	50327800	+	0	NA	exon (NM_001291842, exon 2 of 5)	exon (NM_001291842, exon 2 of 5)	8652	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
34152	chr10	128061871	128062030	+	0	NA	intron (NM_001323354, intron 8 of 19)	intron (NM_001323354, intron 8 of 19)	475	NR_136150	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
137829	chr2	200471271	200471630	+	0	NA	intron (NM_001282743, intron 10 of 11)	intron (NM_001282743, intron 10 of 11)	38618	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
155120	chr22	37628821	37629880	+	0	NA	intron (NM_001172688, intron 12 of 17)	intron (NM_001172688, intron 12 of 17)	-10319	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
233722	chrX	1336551	1337500	+	0	NA	intron (NM_001267713, intron 1 of 9).2	intron (NM_001267713, intron 1 of 9).2	240	NM_002183	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
11700	chr1	91857001	91857200	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	29051	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
40431	chr11	64184821	64186700	+	0	NA	promoter-TSS (NM_006819)	promoter-TSS (NM_006819)	-411	NM_001282653	10963		NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
143881	chr20	32568071	32568550	+	0	NA	intron (NM_001256798, intron 1 of 10)	(AATG)n|Simple_repeat|Simple_repeat	17023	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
83190	chr16	23496921	23497450	+	0	NA	intron (NM_015044, intron 1 of 16)	intron (NM_015044, intron 1 of 16)	13309	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
171188	chr3	195684871	195685030	+	0	NA	intron (NR_003265, intron 14 of 14)	AluJb|SINE|Alu	-3548	NR_122105	440993		NM_001013714		MIR570HG	LINC00969	MIR570 host gene	ncRNA
65136	chr14	45080951	45081330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2976	NM_017922	55015		NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
130592	chr2	85865621	85866080	+	0	NA	intron (NM_001363847, intron 1 of 5)	intron (NM_001363847, intron 1 of 5)	1820	NM_001042437	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
129063	chr2	65073751	65074050	+	0	NA	intron (NM_015147, intron 3 of 6)	intron (NM_015147, intron 3 of 6)	17484	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
80044	chr16	1960561	1962170	+	0	NA	TTS (NR_002327)	TTS (NR_002327)	1101	NR_002327	574042		NR_002327	ENSG00000206811	SNORA10	ACA10|SNORA10A	small nucleolar RNA, H/ACA box 10	snoRNA
223972	chr9	2017101	2018390	+	0	NA	intron (NM_003070, intron 1 of 33)	CpG	2398	NM_001289397	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
8228	chr1	39689201	39689580	+	0	NA	intron (NM_016257, intron 1 of 3)	intron (NM_016257, intron 1 of 3)	2043	NM_016257	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
113708	chr19	10430351	10433550	+	0	NA	promoter-TSS (NM_001111309)	promoter-TSS (NM_001111309)	-485	NM_001111309	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
226214	chr9	65714751	65714950	+	0	NA	intron (NM_001286835, intron 12 of 16)	L1PA3|LINE|L1	-22296	NM_199244	349334		NM_199244	ENSG00000184659	FOXD4L4	FOXD4L2|FOXD4b|bA460E7.2	forkhead box D4 like 4	protein-coding
89211	chr16	88617051	88617850	+	0	NA	intron (NM_144604, intron 8 of 17)	intron (NM_144604, intron 8 of 17)	-21122	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
212996	chr7	130996471	130997730	+	0	NA	intron (NR_109855, intron 2 of 4)	Charlie15b|DNA|hAT-Charlie	83636	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
79036	chr16	72421	73280	+	0	NA	promoter-TSS (NM_022450)	promoter-TSS (NM_022450)	-219	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
115032	chr19	14095751	14096130	+	0	NA	intron (NM_207518, intron 8 of 9)	AluJr|SINE|Alu	-5189	NM_138352	90378		NM_138352	ENSG00000141858	SAMD1	-	sterile alpha motif domain containing 1	protein-coding
83165	chr16	23466151	23466250	+	0	NA	3' UTR (NM_015044, exon 17 of 17)	3' UTR (NM_015044, exon 17 of 17)	-13011	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
178118	chr4	141333371	141333700	+	0	NA	promoter-TSS (NR_121625)	promoter-TSS (NR_121625)	-918	NR_121625	100507639		NR_121625	ENSG00000248810	LINC02432	-	long intergenic non-protein coding RNA 2432	ncRNA
199766	chr6	125903871	125904030	+	0	NA	intron (NM_001199620, intron 12 of 17)	AluSx4|SINE|Alu	-15305	NM_001199622	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
80552	chr16	2811901	2812100	+	0	NA	Intergenic	L1M2a|LINE|L1	-5237	NM_001270452	10942		NM_006799	ENSG00000007038	PRSS21	ESP-1|ESP1|TEST1|TESTISIN	serine protease 21	protein-coding
169586	chr3	170866751	170866850	+	0	NA	intron (NR_135259, intron 3 of 3)	intron (NR_135259, intron 3 of 3)	3395	NR_135259	200916		NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22 like 1	protein-coding
209917	chr7	92424371	92424980	+	0	NA	intron (NR_145992, intron 5 of 9)	intron (NR_145992, intron 5 of 9)	12639	NR_145992	105375396		NM_001317905	ENSG00000293397	TMBIM7P	-	transmembrane BAX inhibitor motif containing 7, pseudogene	pseudo
125352	chr2	10953401	10954400	+	0	NA	Intergenic	Intergenic	41966	NM_002236	3754		NM_002236	ENSG00000162975	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel modifier subfamily F member 1	protein-coding
139919	chr2	230758671	230759430	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	45502	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
169807	chr3	177055621	177056280	+	0	NA	intron (NM_001374330, intron 2 of 14)	intron (NM_001374330, intron 2 of 14)	140528	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
21073	chr1	203306401	203307000	+	0	NA	intron (NM_006763, intron 1 of 1)	intron (NM_006763, intron 1 of 1)	1181	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
129369	chr2	68788451	68788550	+	0	NA	intron (NM_001364819, intron 4 of 10)	intron (NM_001364819, intron 4 of 10)	13590	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
77113	chr15	78937071	78937630	+	0	NA	exon (NM_004390, exon 3 of 12)	exon (NM_004390, exon 3 of 12)	7696	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
225704	chr9	36578721	36579180	+	0	NA	intron (NM_001256693, intron 1 of 15)	AluSg|SINE|Alu	6055	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
215751	chr8	1970971	1971330	+	0	NA	promoter-TSS (NR_126346)	promoter-TSS (NR_126346)	-247	NR_126346	104266957		NR_126346	ENSG00000253696	KBTBD11-OT1	-	KBTBD11 overlapping transcript 1	ncRNA
2015	chr1	6962071	6964030	+	0	NA	intron (NM_001349608, intron 2 of 21)	intron (NM_001349608, intron 2 of 21)	177596	NM_001349609	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
57783	chr12	123045751	123046050	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-35172	NR_036187	100422931		NR_036187	ENSG00000265526	MIR4304	-	microRNA 4304	ncRNA
172872	chr4	3342271	3342730	+	0	NA	intron (NM_198229, intron 2 of 17)	intron (NM_198229, intron 2 of 17)	-27698	NM_198227	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
237844	chrX	130096151	130096450	+	0	NA	intron (NM_001127197, intron 1 of 8)	AluSz6|SINE|Alu	14197	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
1898	chr1	6451001	6451400	+	0	NA	intron (NM_001367474, intron 10 of 14)	intron (NM_001367474, intron 10 of 14)	14973	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
96419	chr17	40172671	40173250	+	0	NA	TTS (NM_007359)	TTS (NM_007359)	-4050	NM_001303534	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
188656	chr5	157245101	157245300	+	0	NA	intron (NM_005546, intron 13 of 16)	AluSx3|SINE|Alu	-20923	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
184178	chr5	95817071	95817780	+	0	NA	intron (NM_001118890, intron 1 of 2)	intron (NM_001118890, intron 1 of 2)	5301	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
200776	chr6	137870311	137871700	+	0	NA	intron (NM_001270508, intron 1 of 8)	intron (NM_001270508, intron 1 of 8)	-2772	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
36126	chr11	3104271	3104630	+	0	NA	intron (NM_145638, intron 8 of 20)	intron (NM_145638, intron 8 of 20)	-47027	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
117226	chr19	19417651	19417750	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	12025	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
199798	chr6	127120951	127121600	+	0	NA	intron (NM_032784, intron 1 of 4)	intron (NM_032784, intron 1 of 4)	2604	NM_032784	84870		NM_032784	ENSG00000146374	RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
21286	chr1	204447921	204448580	+	0	NA	intron (NM_001377335, intron 16 of 35)	AluSx1|SINE|Alu	-36433	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
158427	chr22	50550451	50550550	+	0	NA	TTS (NM_001123225)	TTS (NM_001123225)	4601	NM_138433	113730		NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
3764	chr1	16676371	16677300	+	0	NA	Intergenic	Intergenic	-4420	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
106362	chr18	13261551	13262230	+	0	NA	intron (NM_001378100, intron 1 of 6)	(CAGAG)n|Simple_repeat|Simple_repeat	-15472	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
212968	chr7	130968751	130969050	+	0	NA	intron (NR_109851, intron 4 of 5)	intron (NR_109851, intron 4 of 5)	55436	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
231875	chr9	132988671	132989180	+	0	NA	intron (NM_001377305, intron 4 of 5)	MIR1_Amn|SINE|MIR	9649	NM_001377305	8328		NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding
231340	chr9	130239421	130240080	+	0	NA	Intergenic	LTR82B|LTR|ERVL	-1637	NR_162140	113219459		NR_162140		MIR12126	-	microRNA 12126	ncRNA
196137	chr6	42419551	42420030	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	32261	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
141555	chr2	241504601	241504800	+	0	NA	intron (NM_001282305, intron 1 of 10)	AluSc8|SINE|Alu	3645	NM_001271978	10494		NM_006374	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
188906	chr5	160117971	160118800	+	0	NA	intron (NM_001349732, intron 1 of 3)	intron (NM_001349732, intron 1 of 3)	1065	NR_146216	114825		NM_052927	ENSG00000170234	PWWP2A	MST101	PWWP domain containing 2A	protein-coding
66264	chr14	61364321	61365000	+	0	NA	intron (NM_006255, intron 1 of 13)	AluJb|SINE|Alu	43217	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
126230	chr2	27048751	27049050	+	0	NA	TTS (NR_046730)	TTS (NR_046730)	1364	NR_046730	100874031		NR_046730	ENSG00000231636	AGBL5-AS1	-	AGBL5 antisense RNA 1	ncRNA
189874	chr5	177307951	177308450	+	0	NA	intron (NM_031300, intron 4 of 5)	intron (NM_031300, intron 4 of 5)	3698	NM_031300	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
24739	chr1	248528351	248528460	+	0	NA	Intergenic	L1PA3|LINE|L1	6758	NM_001013355	391211		NM_001013355	ENSG00000188558	OR2G6	-	olfactory receptor family 2 subfamily G member 6	protein-coding
81235	chr16	4592401	4592800	+	0	NA	intron (NM_001145011, intron 11 of 15)	intron (NM_001145011, intron 11 of 15)	22288	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
57821	chr12	123223051	123224330	+	0	NA	intron (NM_022782, intron 3 of 23)	L2b|LINE|L2	9451	NM_022782	10198		NM_022782	ENSG00000051825	MPHOSPH9	MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding
78341	chr15	91032751	91033530	+	0	NA	Intergenic	Intergenic	10518	NR_110104	101926911		NR_110104	ENSG00000214432	VPS33B-DT	-	VPS33B divergent transcript	ncRNA
197695	chr6	85646151	85646250	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3278	NM_001159673	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
208020	chr7	55572101	55573530	+	0	NA	promoter-TSS (NM_001321247)	promoter-TSS (NM_001321247)	-313	NM_001321244	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
118521	chr19	35998901	35999500	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	4012	NM_001042631	644096		NM_001042631	ENSG00000205138	SDHAF1	LYRM8|MC2DN2	succinate dehydrogenase complex assembly factor 1	protein-coding
225603	chr9	36153551	36154000	+	0	NA	intron (NM_022343, intron 4 of 4)	AluSz|SINE|Alu	-15613	NM_005893	881		NM_005893	ENSG00000185972	CCIN	BTBD20|KBTBD14	calicin	protein-coding
123373	chr19	53900051	53900650	+	0	NA	intron (NM_001316329, intron 12 of 18)	intron (NM_001316329, intron 12 of 18)	-8928	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
138573	chr2	207721801	207722200	+	0	NA	intron (NM_001330218, intron 1 of 9)	intron (NM_001330218, intron 1 of 9)	10360	NM_001330218	151195		NM_152523	ENSG00000163249	CCNYL1	-	cyclin Y like 1	protein-coding
201574	chr6	149330771	149331130	+	0	NA	intron (NM_015093, intron 1 of 8)	L1MC|LINE|L1	12650	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
82203	chr16	14983701	14985000	+	0	NA	intron (NM_001324019, intron 1 of 22)	intron (NM_001324019, intron 1 of 22)	9324	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
221485	chr8	124490671	124491550	+	0	NA	intron (NM_032026, intron 11 of 11)	L2a|LINE|L2	16230	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
228688	chr9	107775901	107776100	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-286231	NM_001314052	9314		NM_004235	ENSG00000136826	KLF4	EZF|GKLF	KLF transcription factor 4	protein-coding
74899	chr15	63603271	63603930	+	0	NA	TTS (NM_001367809)	TTS (NM_001367809)	-2773	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
91282	chr17	4138671	4139030	+	0	NA	intron (NM_015113, intron 1 of 54)	intron (NM_015113, intron 1 of 54)	4180	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
57128	chr12	121213871	121215230	+	0	NA	intron (NR_046373, intron 1 of 10)	intron (NR_046373, intron 1 of 10)	4421	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
46144	chr11	123047071	123047880	+	0	NA	Intergenic	Intergenic	10681	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
31381	chr10	94361101	94361650	+	0	NA	intron (NM_022451, intron 2 of 20)	intron (NM_022451, intron 2 of 20)	1564	NM_022451	64318		NM_022451	ENSG00000173145	NOC3L	AD24|C10orf117|FAD24	NOC3 like DNA replication regulator	protein-coding
214677	chr7	150959801	150960400	+	0	NA	intron (NM_172056, intron 2 of 8)	intron (NM_172056, intron 2 of 8)	-4271	NM_172057	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
45317	chr11	118172701	118173200	+	0	NA	intron (NM_004588, intron 1 of 3)	intron (NM_004588, intron 1 of 3)	3689	NM_004588	6327		NM_004588	ENSG00000149575	SCN2B	ATFB14	sodium voltage-gated channel beta subunit 2	protein-coding
35389	chr11	1341301	1341500	+	0	NA	Intergenic	Intergenic	31692	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
50885	chr12	49235201	49235800	+	0	NA	intron (NM_001303114, intron 1 of 3)	AluSx|SINE|Alu	7481	NM_001303115	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
87000	chr16	68237101	68238600	+	0	NA	Intergenic	CpG-9862	-1723	NM_024939	80004		NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
228415	chr9	99235851	99236200	+	0	NA	Intergenic	Intergenic	13743	NM_006808	10952		NM_006808	ENSG00000106803	SEC61B	-	SEC61 translocon subunit beta	protein-coding
24568	chr1	244969071	244969900	+	0	NA	promoter-TSS (NR_026587)	promoter-TSS (NR_026587)	-384	NM_032328	84288		NM_032328	ENSG00000203666	EFCAB2	CFAP200|DRC8	EF-hand calcium binding domain 2	protein-coding
221618	chr8	125646871	125647350	+	0	NA	Intergenic	Intergenic	214901	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
32816	chr10	109933421	109934550	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-10432	NM_001167604	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
72589	chr15	34986551	34987030	+	0	NA	intron (NM_014106, intron 2 of 2)	MER76|LTR|ERVL	1497	NM_014106	54989		NM_014106	ENSG00000198146	ZNF770	PRO1914	zinc finger protein 770	protein-coding
225953	chr9	41104221	41104880	+	0	NA	non-coding (NR_015361, exon 3 of 4)	non-coding (NR_015361, exon 3 of 4)	3262	NR_015361	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
195385	chr6	36734951	36735730	+	0	NA	Intergenic	Intergenic	22060	NM_001376891	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
207545	chr7	44838851	44839150	+	0	NA	intron (NM_201517, intron 2 of 3)	intron (NM_201517, intron 2 of 3)	9087	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
41450	chr11	66100351	66101930	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	30868	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
126384	chr2	27496601	27497400	+	0	NA	intron (NM_001486, intron 1 of 18)	intron (NM_001486, intron 1 of 18)	161	NM_001486	2646		NM_001486	ENSG00000084734	GCKR	FGQTL5|GKRP	glucokinase regulator	protein-coding
53308	chr12	64571321	64571580	+	0	NA	Intergenic	Intergenic	-39045	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
36058	chr11	2949571	2950000	+	0	NA	intron (NM_001369379, intron 14 of 15).2	intron (NM_001369379, intron 14 of 15).2	14108	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
154232	chr22	31556651	31556950	+	0	NA	intron (NM_001007467, intron 6 of 32)	intron (NM_001007467, intron 6 of 32)	60264	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
101526	chr17	67854471	67854630	+	0	NA	exon (NM_004459, exon 2 of 30)	exon (NM_004459, exon 2 of 30)	29047	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
149724	chr21	34132251	34132550	+	0	NA	intron (NM_032476, intron 2 of 2)	intron (NM_032476, intron 2 of 2)	-48277	NR_027267	114036		NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
184062	chr5	92198951	92199050	+	0	NA	Intergenic	L1PA2|LINE|L1	-815683	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
135656	chr2	168432721	168433200	+	0	NA	Intergenic	Intergenic	-23312	NM_203463	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
226800	chr9	77097551	77097650	+	0	NA	Intergenic	(C)n|Simple_repeat|Simple_repeat	77945	NM_001013735	442425		NM_001013735	ENSG00000204612	FOXB2	FKH4|bA159H20.4	forkhead box B2	protein-coding
143014	chr20	20712221	20713330	+	0	NA	promoter-TSS (NM_020343)	promoter-TSS (NM_020343)	-131	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
2172	chr1	8473471	8473830	+	0	NA	intron (NM_012102, intron 11 of 23)	intron (NM_012102, intron 11 of 23)	21263	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
220272	chr8	97737371	97737530	+	0	NA	Intergenic	AluSz6|SINE|Alu	-38338	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
127405	chr2	42095751	42097400	+	0	NA	Intergenic	AluJb|SINE|Alu	48554	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
235150	chrX	41109571	41110180	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	24430	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
35187	chr11	790901	791200	+	0	NA	promoter-TSS (NM_016564)	promoter-TSS (NM_016564)	-960	NM_016564	51286		NM_016564	ENSG00000184524	CEND1	BM88	cell cycle exit and neuronal differentiation 1	protein-coding
193644	chr6	30829651	30830080	+	0	NA	intron (NR_130726, intron 1 of 1)	MER50|LTR|ERV1	794	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
41111	chr11	65550101	65550300	+	0	NA	intron (NM_001130144, intron 11 of 27)	AluY|SINE|Alu	8028	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
100623	chr17	63596971	63597580	+	0	NA	Intergenic	Intergenic	-3620	NM_016360	51204		NM_016360	ENSG00000136463	TACO1	CCDC44|MC4DN8	translational activator of cytochrome c oxidase I	protein-coding
45119	chr11	117156851	117156950	+	0	NA	intron (NM_001184747, intron 2 of 5)	AluJb|SINE|Alu	12613	NM_002572	5049		NM_002572	ENSG00000168092	PAFAH1B2	HEL-S-303	platelet activating factor acetylhydrolase 1b catalytic subunit 2	protein-coding
39076	chr11	47987501	47988080	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	7231	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
153752	chr22	29341571	29341730	+	0	NA	exon (NM_001166019, exon 13 of 21)	exon (NM_001166019, exon 13 of 21)	-8392	NR_003686	100113380		NR_003686	ENSG00000239127	SNORD125	-	small nucleolar RNA, C/D box 125	snoRNA
117077	chr19	19068771	19069580	+	0	NA	intron (NM_178526, intron 1 of 7)	intron (NM_178526, intron 1 of 7)	5181	NM_178526	284439		NM_178526	ENSG00000181035	SLC25A42	MECREN	solute carrier family 25 member 42	protein-coding
121393	chr19	46936071	46936230	+	0	NA	intron (NM_004491, intron 2 of 6)	AluJb|SINE|Alu	75153	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
202745	chr6	159023871	159024450	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	18193	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
61372	chr13	51437521	51437980	+	0	NA	3' UTR (NM_001039938, exon 3 of 3)	3' UTR (NM_001039938, exon 3 of 3)	15286	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
10519	chr1	66933771	66934830	+	0	NA	intron (NM_001077704, intron 1 of 13)	MIR3|SINE|MIR	4044	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
203594	chr7	928421	929000	+	0	NA	intron (NM_006869, intron 2 of 10)	L1MB7|LINE|L1	-1494	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
41818	chr11	67024601	67025730	+	0	NA	intron (NM_177963, intron 1 of 7)	MIR|SINE|MIR	2031	NM_177963	91683		NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
135906	chr2	171409201	171409680	+	0	NA	intron (NM_024770, intron 1 of 9)	intron (NM_024770, intron 1 of 9)	24550	NM_001321155	79828		NM_024770	ENSG00000123600	METTL8	TIP	methyltransferase 8, tRNA N3-cytidine	protein-coding
39283	chr11	58530001	58530730	+	0	NA	intron (NM_004811, intron 7 of 8)	L1PA7|LINE|L1	-22065	NM_001005218	219968		NM_001005218	ENSG00000198283	OR5B21	-	olfactory receptor family 5 subfamily B member 21	protein-coding
65909	chr14	55284121	55284380	+	0	NA	intron (NM_152231, intron 1 of 1)	AluSq2|SINE|Alu	12096	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
61901	chr13	77325051	77325900	+	0	NA	intron (NM_015057, intron 1 of 82)	intron (NM_015057, intron 1 of 82)	1619	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
8606	chr1	41545521	41546480	+	0	NA	intron (NM_001127714, intron 4 of 7)	MIRb|SINE|MIR	-61317	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
5642	chr1	26236901	26237100	+	0	NA	intron (NM_001319944, intron 1 of 13)	MER4B|LTR|ERV1	2800	NM_022778	64793		NM_022778	ENSG00000130695	CEP85	CCDC21	centrosomal protein 85	protein-coding
193743	chr6	31265051	31266400	+	0	NA	Intergenic	LTR9D|LTR|ERV1	6367	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
100724	chr17	63884701	63885500	+	0	NA	Intergenic	Intergenic	-3156	NM_022557	2689		NM_002059	ENSG00000136487	GH2	GH-V|GHB2|GHL|GHV|hGH-V	growth hormone 2	protein-coding
86689	chr16	67523301	67523700	+	0	NA	intron (NR_104656, intron 1 of 1)	AluSx|SINE|Alu	5245	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
217274	chr8	27346151	27347180	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	21101	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
233895	chrX	1596351	1596850	+	0	NA	intron (NM_004043, intron 1 of 9)	intron (NM_004043, intron 1 of 9)	1145	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
59488	chr13	26481521	26481780	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-76033	NM_006646	10810		NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	WASP family member 3	protein-coding
169034	chr3	152694901	152695100	+	0	NA	Intergenic	L1PB1|LINE|L1	-140131	NM_002563	5028		NM_002563	ENSG00000169860	P2RY1	P2Y1|SARCC	purinergic receptor P2Y1	protein-coding
205848	chr7	24912821	24913550	+	0	NA	intron (NM_015550, intron 1 of 22)	MLT1G1|LTR|ERVL-MaLR	-20564	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
169301	chr3	158643371	158643700	+	0	NA	promoter-TSS (NM_024996)	promoter-TSS (NM_024996)	-992	NR_164499	85476		NM_024996	ENSG00000168827	GFM1	COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1|mtEF-G1	G elongation factor mitochondrial 1	protein-coding
53742	chr12	68642071	68642300	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	-14810	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
20594	chr1	198760801	198761000	+	0	NA	Intergenic	L1PA13|LINE|L1	98082	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
149623	chr21	33400251	33400500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2521	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
185573	chr5	131384551	131385350	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	120897	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
95444	chr17	36138501	36138700	+	0	NA	Intergenic	AluSz|SINE|Alu	34773	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
211245	chr7	102656521	102656980	+	0	NA	intron (NM_001166339, intron 5 of 8).2	intron (NM_001166339, intron 5 of 8).2	6425	NM_001031618	441273		NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1|SPDYB2L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
112179	chr19	5662501	5662900	+	0	NA	intron (NM_001320571, intron 13 of 18)	AluSx1|SINE|Alu	17538	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
141632	chr2	241699301	241700450	+	0	NA	intron (NM_001330161, intron 2 of 7)	intron (NM_001330161, intron 2 of 7)	-2164	NM_032329	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
123046	chr19	51311021	51311480	+	0	NA	promoter-TSS (NM_001101372)	promoter-TSS (NM_001101372)	-598	NM_001101372	402665		NM_001101372	ENSG00000142549	IGLON5	-	IgLON family member 5	protein-coding
132448	chr2	105854001	105854400	+	0	NA	intron (NM_001004720, intron 1 of 3)	L1MC1|LINE|L1	2353	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
93925	chr17	21296071	21296430	+	0	NA	intron (NM_001316332, intron 2 of 12)	MIRb|SINE|MIR	8214	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
136055	chr2	172690251	172690350	+	0	NA	Intergenic	L1PA6|LINE|L1	-45545	NM_001375872	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
28618	chr10	58299371	58299900	+	0	NA	Intergenic	Intergenic	30044	NR_158219	112268068		NR_158219		LOC112268068	-	uncharacterized LOC112268068	ncRNA
57056	chr12	120901371	120901750	+	0	NA	intron (NM_139015, intron 1 of 10)	AluSx3|SINE|Alu	2798	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
185240	chr5	123421771	123421950	+	0	NA	intron (NM_001166226, intron 1 of 19)	intron (NM_001166226, intron 1 of 19)	1543	NM_001375409	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
4016	chr1	18933351	18933650	+	0	NA	intron (NM_001136265, intron 1 of 8)	AluJb|SINE|Alu	23176	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
238457	chrX	152926171	152926600	+	0	NA	intron (NM_001178107, intron 11 of 22)	intron (NM_001178107, intron 11 of 22)	8520	NM_001178113	7739		NM_007150	ENSG00000147394	ZNF185	SCELL	zinc finger protein 185 with LIM domain	protein-coding
229101	chr9	114382731	114383570	+	0	NA	intron (NM_030767, intron 1 of 21)	L2c|LINE|L2	4832	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
108459	chr18	70491771	70492000	+	0	NA	Intergenic	Intergenic	-107294	NR_110764	101060542		NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
219154	chr8	66434671	66435650	+	0	NA	intron (NM_144650, intron 1 of 13)	L2a|LINE|L2	2656	NM_144650	137872		NM_144650	ENSG00000147576	ADHFE1	ADH8|HMFT2263|HOT	alcohol dehydrogenase iron containing 1	protein-coding
161943	chr3	46146371	46146930	+	0	NA	Intergenic	Intergenic	-60806	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
186621	chr5	138537771	138537930	+	0	NA	intron (NM_001291975, intron 2 of 11)	AluY|SINE|Alu	3861	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
228293	chr9	98098771	98098930	+	0	NA	intron (NM_014788, intron 3 of 5)	AluSz6|SINE|Alu	20372	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
169978	chr3	179347151	179349100	+	0	NA	intron (NM_033540, intron 1 of 17)	CpG	416	NM_033540	55669		NM_017927	ENSG00000171109	MFN1	hfzo1|hfzo2	mitofusin 1	protein-coding
98999	chr17	48749801	48750300	+	0	NA	Intergenic	Intergenic	-21300	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
48601	chr12	10323071	10323230	+	0	NA	non-coding (NR_147040, exon 5 of 5)	non-coding (NR_147040, exon 5 of 5)	15142	NR_159946	113523642		NR_159946	ENSG00000256288	LINC02617	-	long intergenic non-protein coding RNA 2617	ncRNA
16987	chr1	155976121	155977400	+	0	NA	intron (NM_001350112, intron 1 of 21)	intron (NM_001350112, intron 1 of 21)	1415	NM_001350111	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
9997	chr1	55151151	55151880	+	0	NA	intron (NM_015306, intron 16 of 67)	intron (NM_015306, intron 16 of 67)	63849	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
110175	chr19	1662621	1663500	+	0	NA	Intergenic	AluSx3|SINE|Alu	-10445	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
221992	chr8	130006071	130006250	+	0	NA	intron (NM_001353269, intron 1 of 10)	AluSz6|SINE|Alu	2293	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
199284	chr6	111972721	111973780	+	0	NA	Intergenic	Intergenic	-63853	NR_149099	105377946		NR_149099		LINC02527	-	long intergenic non-protein coding RNA 2527	ncRNA
168242	chr3	141377901	141378300	+	0	NA	intron (NM_001376119, intron 2 of 3)	AluJr|SINE|Alu	-6705	NM_001376143	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
155773	chr22	39238521	39239150	+	0	NA	intron (NM_002608, intron 1 of 6)	MER20|DNA|hAT-Charlie	2074	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
3920	chr1	17419701	17420280	+	0	NA	intron (NM_018715, intron 7 of 12).2	CpG	18546	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
74525	chr15	60478321	60480300	+	0	NA	promoter-TSS (NM_001018089)	promoter-TSS (NM_001018089)	132	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
1556	chr1	3493201	3493400	+	0	NA	intron (NM_001409, intron 34 of 36)	intron (NM_001409, intron 34 of 36)	38635	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
92508	chr17	8890551	8890650	+	0	NA	intron (NM_001251855, intron 6 of 17)	intron (NM_001251855, intron 6 of 17)	21917	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
81313	chr16	4699251	4699850	+	0	NA	intron (NM_133450, intron 11 of 17)	L1M4|LINE|L1	5832	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
49135	chr12	14924751	14925100	+	0	NA	intron (NM_152321, intron 3 of 6)	MER41A|LTR|ERV1	4200	NM_001300784	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
93717	chr17	19509471	19509630	+	0	NA	Intergenic	AluJo|SINE|Alu	-24304	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
196269	chr6	42939201	42939800	+	0	NA	TTS (NM_001318842)	TTS (NM_001318842)	10020	NR_134891	107080644		NM_001318856		CNPY3-GNMT	-	CNPY3-GNMT readthrough	protein-coding
190481	chr5	180295701	180295900	+	0	NA	Intergenic	Intergenic	-3717	NM_001135044	5601		NM_002752	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
118345	chr19	35636621	35637080	+	0	NA	intron (NM_024321, intron 8 of 9)	MIR|SINE|MIR	-4895	NM_001300974	2116		NM_014209	ENSG00000105672	ETV2	ER71|ETSRP71	ETS variant transcription factor 2	protein-coding
96843	chr17	41976371	41977030	+	0	NA	non-coding (NR_029431, exon 13 of 13)	non-coding (NR_029431, exon 13 of 13)	8903	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
179637	chr4	186193901	186194100	+	0	NA	intron (NM_207352, intron 1 of 10)	intron (NM_207352, intron 1 of 10)	2433	NM_207352	285440		NM_207352	ENSG00000145476	CYP4V2	BCD|CYP4AH1	cytochrome P450 family 4 subfamily V member 2	protein-coding
214858	chr7	151351171	151351330	+	0	NA	intron (NM_016118, intron 3 of 14)	intron (NM_016118, intron 3 of 14)	9438	NM_016118	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
21801	chr1	207071471	207072230	+	0	NA	intron (NM_001018053, intron 14 of 14)	intron (NM_001018053, intron 14 of 14)	-17010	NM_001017365	725		NM_000716	ENSG00000123843	C4BPB	C4BP	complement component 4 binding protein beta	protein-coding
25809	chr10	11192071	11192680	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	27345	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
21495	chr1	205733551	205734150	+	0	NA	intron (NM_022731, intron 1 of 6)	(TATC)n|Simple_repeat|Simple_repeat	16332	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
121142	chr19	46261451	46261950	+	0	NA	Intergenic	Intergenic	31958	NM_198541	374918		NM_198541	ENSG00000188293	IGFL1	APRG644|UNQ644	IGF like family member 1	protein-coding
116556	chr19	18225971	18226830	+	0	NA	promoter-TSS (NM_001369701)	promoter-TSS (NM_001369701)	38	NM_001098818	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
118870	chr19	38663901	38665130	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	16866	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
62084	chr13	94547401	94547800	+	0	NA	intron (NM_001322186, intron 1 of 9)	intron (NM_001322186, intron 1 of 9)	1806	NM_001322186	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
204412	chr7	3092121	3093130	+	0	NA	Intergenic	Intergenic	-48758	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
56760	chr12	120157721	120158000	+	0	NA	exon (NM_006836, exon 26 of 58)	exon (NM_006836, exon 26 of 58)	-2361	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
6024	chr1	27101951	27102050	+	0	NA	intron (NR_046474, intron 8 of 10)	intron (NR_046474, intron 8 of 10)	53125	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
82726	chr16	21156771	21157300	+	0	NA	intron (NM_017539, intron 1 of 61)	intron (NM_017539, intron 1 of 61)	-1639	NM_001301774	57146		NM_020422	ENSG00000011638	LDAF1	TMEM159	lipid droplet assembly factor 1	protein-coding
207321	chr7	44040211	44041550	+	0	NA	promoter-TSS (NR_024116)	promoter-TSS (NR_024116)	-257	NR_024116	401331		NR_024116		RASA4CP	RASA4P	RAS p21 protein activator 4C, pseudogene	pseudo
200749	chr6	137798801	137799200	+	0	NA	Intergenic	Tigger17c|DNA|TcMar-Tigger	-59963	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
130747	chr2	86805371	86805630	+	0	NA	intron (NR_168478, intron 1 of 7)	L1ME3Cz|LINE|L1	2542	NR_168479	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
160590	chr3	31219551	31219850	+	0	NA	Intergenic	Intergenic	-57913	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
177439	chr4	112636621	112638080	+	0	NA	promoter-TSS (NM_015454)	promoter-TSS (NM_015454)	-106	NM_015454	51574		NM_015454	ENSG00000174720	LARP7	ALAZS|HDCMA18P|PIP7S|hLARP7	La ribonucleoprotein 7, transcriptional regulator	protein-coding
162416	chr3	48297151	48297250	+	0	NA	intron (NM_001308434, intron 1 of 4)	intron (NM_001308434, intron 1 of 4)	4211	NM_001308433	10201		NM_005793	ENSG00000172113	NME6	IPIA-ALPHA|NDK 6|NM23-H6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding
155674	chr22	39038121	39038750	+	0	NA	Intergenic	MER49|LTR|ERV1	-2429	NM_145298	200316		NM_145298	ENSG00000128394	APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	apolipoprotein B mRNA editing enzyme catalytic subunit 3F	protein-coding
143387	chr20	28898201	28898630	+	0	NA	Intergenic	(CCATT)n|Simple_repeat|Simple_repeat	-181975	NR_132316	102723316		NR_132316		FRG1DP	-	FSHD region gene 1 family member D, pseudogene	pseudo
199330	chr6	113858001	113858200	+	0	NA	intron (NM_002356, intron 1 of 1)	intron (NM_002356, intron 1 of 1)	755	NM_002356	4082		NM_002356	ENSG00000277443	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
183552	chr5	80124771	80125250	+	0	NA	intron (NR_126061, intron 11 of 13)	intron (NR_126061, intron 11 of 13)	-41345	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
21460	chr1	205543471	205543700	+	0	NA	Intergenic	(CCTC)n|Simple_repeat|Simple_repeat	-25429	NM_181644	148808		NM_181644	ENSG00000174514	MFSD4A	MFSD4|SLC60A1|UNQ3064	major facilitator superfamily domain containing 4A	protein-coding
33602	chr10	119535821	119536680	+	0	NA	intron (NM_001005339, intron 1 of 4)	intron (NM_001005339, intron 1 of 4)	283	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
21108	chr1	203538151	203538480	+	0	NA	Intergenic	MIRb|SINE|MIR	44162	NM_014359	26254		NM_014359	ENSG00000188770	OPTC	OPT	opticin	protein-coding
44558	chr11	108199301	108199500	+	0	NA	intron (NM_001321307, intron 1 of 17)	LTR27E|LTR|ERV1	23238	NM_001321307	4863		NM_002519	ENSG00000149308	NPAT	E14|E14/NPAT|p220	nuclear protein, coactivator of histone transcription	protein-coding
121099	chr19	45922251	45923080	+	0	NA	Intergenic	L2a|LINE|L2	-7887	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
56795	chr12	120203271	120203580	+	0	NA	intron (NR_038924, intron 1 of 3)	AluSp|SINE|Alu	2134	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
236815	chrX	79169271	79170000	+	0	NA	intron (NM_032553, intron 2 of 2)	intron (NM_032553, intron 2 of 2)	24947	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
103340	chr17	78019021	78019880	+	0	NA	intron (NM_001142640, intron 2 of 21)	intron (NM_001142640, intron 2 of 21)	15213	NM_018996	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
66497	chr14	61698101	61698630	+	0	NA	intron (NM_001243084, intron 1 of 14)	MIR|SINE|MIR	743	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
86381	chr16	66599521	66600380	+	0	NA	Intergenic	L1ME2|LINE|L1	-4046	NM_144601	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
137410	chr2	196266801	196267200	+	0	NA	intron (NM_001348768, intron 17 of 28)	intron (NM_001348768, intron 17 of 28)	6976	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
103875	chr17	79777591	79779400	+	0	NA	intron (NM_032647, intron 2 of 3)	CpG-11769	317	NM_032647	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
77096	chr15	78922401	78922800	+	0	NA	intron (NM_001319137, intron 12 of 12)	intron (NM_001319137, intron 12 of 12)	22446	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
6691	chr1	29167671	29167830	+	0	NA	intron (NM_005626, intron 1 of 5)	intron (NM_005626, intron 1 of 5)	14150	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
80083	chr16	1998471	1998630	+	0	NA	exon (NM_178167, exon 14 of 14)	exon (NM_178167, exon 14 of 14)	8580	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
120144	chr19	42219701	42221280	+	0	NA	promoter-TSS (NR_073047)	promoter-TSS (NR_073047)	178	NM_001314033	116115		NM_133444	ENSG00000167625	ZNF526	DENNED	zinc finger protein 526	protein-coding
158535	chr3	3201521	3202000	+	0	NA	Intergenic	Intergenic	-22043	NM_001173482	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
41952	chr11	67315271	67315930	+	0	NA	Intergenic	MER21A|LTR|ERVL	-2239	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
4610	chr1	22095051	22095530	+	0	NA	3' UTR (NM_001039802, exon 7 of 7)	3' UTR (NM_001039802, exon 7 of 7)	42581	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
188869	chr5	159341251	159341350	+	0	NA	intron (NR_037889, intron 2 of 4)	intron (NR_037889, intron 2 of 4)	9782	NR_037889	285626		NR_037889	ENSG00000249738	LOC285626	-	uncharacterized LOC285626	ncRNA
112197	chr19	5676351	5676780	+	0	NA	Intergenic	Intergenic	3673	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
152117	chr22	19934051	19934350	+	0	NA	promoter-TSS (NM_001352303)	promoter-TSS (NM_001352303)	-674	NM_001352303	10587		NM_006440	ENSG00000184470	TXNRD2	GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2|TXNR2	thioredoxin reductase 2	protein-coding
36235	chr11	3701701	3702100	+	0	NA	intron (NR_157589, intron 23 of 31)	AluY|SINE|Alu	-30516	NM_001303034	57053		NM_020402	ENSG00000129749	CHRNA10	-	cholinergic receptor nicotinic alpha 10 subunit	protein-coding
80276	chr16	2236221	2237280	+	0	NA	intron (NM_001301680, intron 1 of 6)	CpG	306	NM_001301680	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
209610	chr7	77687351	77688100	+	0	NA	intron (NR_134251, intron 1 of 3)	intron (NR_134251, intron 1 of 3)	8540	NR_134254	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
49703	chr12	31071171	31072500	+	0	NA	intron (NR_038927, intron 1 of 2)	LTR12C|LTR|ERV1	2012	NR_038927	100506660		NR_038927	ENSG00000245614	DDX11-AS1	CONCR|SCAT4	DDX11 antisense RNA 1	ncRNA
223788	chr8	144685221	144686350	+	0	NA	promoter-TSS (NM_001308208)	promoter-TSS (NM_001308208)	61	NM_001308208	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
1335	chr1	2468071	2468600	+	0	NA	intron (NM_001303012, intron 1 of 21)	intron (NM_001303012, intron 1 of 21)	884	NM_001303012	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
1283	chr1	2324651	2325400	+	0	NA	intron (NM_024848, intron 12 of 13)	intron (NM_024848, intron 12 of 13)	27636	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
22342	chr1	214439551	214440080	+	0	NA	intron (NM_005401, intron 3 of 18)	CR1_Mam|LINE|CR1	111787	NM_005401	5784		NM_005401	ENSG00000152104	PTPN14	CATLPH|PEZ|PTP36|PTPD2	protein tyrosine phosphatase non-receptor type 14	protein-coding
109116	chr18	80105921	80106980	+	0	NA	Intergenic	L2c|LINE|L2	-2812	NM_014913	22850		NM_014913	ENSG00000101544	ADNP2	ZNF508	ADNP homeobox 2	protein-coding
217992	chr8	38384771	38385600	+	0	NA	Intergenic	Intergenic	-1256	NM_001286787	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
226678	chr9	75085371	75086150	+	0	NA	intron (NM_001127603, intron 1 of 7)	intron (NM_001127603, intron 1 of 7)	2395	NM_001127603	54981		NM_017881	ENSG00000106733	NMRK1	C9orf95|NRK1|bA235O14.2	nicotinamide riboside kinase 1	protein-coding
136583	chr2	178113951	178114050	+	0	NA	intron (NM_152945, intron 1 of 9)	intron (NM_152945, intron 1 of 9)	1563	NM_152945	129831		NM_152945	ENSG00000155636	RBM45	DRB1|RB-1	RNA binding motif protein 45	protein-coding
210691	chr7	100571831	100572100	+	0	NA	TTS (NM_001348680)	TTS (NM_001348680)	1935	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
117142	chr19	19313571	19313930	+	0	NA	intron (NM_172231, intron 2 of 13)	AluSx|SINE|Alu	6759	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
139780	chr2	230224001	230224600	+	0	NA	intron (NM_001378444, intron 1 of 19)	intron (NM_001378444, intron 1 of 19)	1336	NM_001185015	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
212947	chr7	130942101	130942700	+	0	NA	intron (NR_109855, intron 4 of 4)	intron (NR_109855, intron 4 of 4)	28936	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
146094	chr20	47609571	47609730	+	0	NA	intron (NM_181659, intron 2 of 22)	AluSx3|SINE|Alu	107763	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
84983	chr16	31455301	31456130	+	0	NA	Intergenic	Intergenic	-2589	NM_001288767	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
116752	chr19	18480571	18480900	+	0	NA	intron (NM_006532, intron 1 of 11)	AluJb|SINE|Alu	41335	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
164827	chr3	71006751	71007800	+	0	NA	intron (NM_001244810, intron 12 of 20)	intron (NM_001244810, intron 12 of 20)	57649	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
154066	chr22	30649121	30650230	+	0	NA	intron (NM_001318370, intron 2 of 2)	intron (NM_001318370, intron 2 of 2)	13860	NM_001318370	339665		NM_001001479	ENSG00000100036	SLC35E4	-	solute carrier family 35 member E4	protein-coding
133574	chr2	121533001	121533530	+	0	NA	intron (NM_001142274, intron 2 of 37)	intron (NM_001142274, intron 2 of 37)	2385	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
128374	chr2	55022021	55022680	+	0	NA	intron (NM_153828, intron 1 of 6)	L2|LINE|L2	-12078	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
160329	chr3	27666771	27666930	+	0	NA	Intergenic	Intergenic	55473	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
167741	chr3	131502201	131503350	+	0	NA	exon (NM_007208, exon 1 of 10)	exon (NM_007208, exon 1 of 10)	196	NM_007208	11222		NM_007208	ENSG00000114686	MRPL3	COXPD9|MRL3|RPML3|uL3m	mitochondrial ribosomal protein L3	protein-coding
65672	chr14	52553701	52554450	+	0	NA	intron (NM_001353361, intron 1 of 7)	intron (NM_001353361, intron 1 of 7)	1239	NM_001353361	283554		NM_001099652	ENSG00000180998	GPR137C	TM7SF1L2	G protein-coupled receptor 137C	protein-coding
22708	chr1	224112751	224113050	+	0	NA	Intergenic	L1MC4|LINE|L1	-1211	NM_015176	23219		NM_015176	ENSG00000143756	FBXO28	CENP-30|DEE100|Fbx28	F-box protein 28	protein-coding
220994	chr8	115588851	115589150	+	0	NA	intron (NM_001282903, intron 4 of 6)	L2c|LINE|L2	79013	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
206514	chr7	33905021	33905530	+	0	NA	promoter-TSS (NM_001365308)	promoter-TSS (NM_001365308)	-264	NM_001365308	168667		NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
157019	chr22	42539251	42539750	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	-14456	NR_104301	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
23517	chr1	229001671	229001830	+	0	NA	Intergenic	MIRb|SINE|MIR	173051	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
37604	chr11	19963721	19964180	+	0	NA	intron (NM_145117, intron 10 of 37)	intron (NM_145117, intron 10 of 37)	-58606	NM_001111019	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
117099	chr19	19174001	19174200	+	0	NA	intron (NR_027308, intron 5 of 11)	intron (NR_027308, intron 5 of 11)	-3837	NM_001367282	100271849		NM_001145785	ENSG00000213999	MEF2B	RSRFR2	myocyte enhancer factor 2B	protein-coding
184236	chr5	96652071	96652730	+	0	NA	Intergenic	Intergenic	-9637	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
166151	chr3	111572001	111572650	+	0	NA	intron (NR_134917, intron 3 of 14)	LTR43B|LTR|ERV1	23021	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
92346	chr17	8171471	8171930	+	0	NA	TTS (NM_183065)	TTS (NM_183065)	1888	NR_033294	727676		NR_033294	ENSG00000200463	SNORD118	LCC|U8	small nucleolar RNA, C/D box 118	snoRNA
183756	chr5	81616401	81616600	+	0	NA	intron (NM_001256733, intron 3 of 15)	L1HS|LINE|L1	134753	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
81126	chr16	4388901	4389500	+	0	NA	intron (NM_001351729, intron 7 of 27)	intron (NM_001351729, intron 7 of 27)	17352	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
82522	chr16	17921671	17921830	+	0	NA	Intergenic	Intergenic	410912	NM_001282507	101059938		NM_001282507	ENSG00000214967	NPIPA7	NPIPA8	nuclear pore complex interacting protein family member A7	protein-coding
222125	chr8	131936401	131936800	+	0	NA	intron (NM_001323557, intron 1 of 22)	MER21B|LTR|ERVL	19827	NM_001323557	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
170727	chr3	188153731	188155150	+	0	NA	promoter-TSS (NR_036497)	promoter-TSS (NR_036497)	283	NM_001375463	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
140116	chr2	231514141	231515280	+	0	NA	promoter-TSS (NR_024079)	promoter-TSS (NR_024079)	-371	NR_024079	151477		NM_173513	ENSG00000181798	LINC00471	C2orf52	long intergenic non-protein coding RNA 471	ncRNA
205361	chr7	13830251	13830550	+	0	NA	Intergenic	MLT1K-int|LTR|ERVL-MaLR	156114	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
50700	chr12	48921801	48922330	+	0	NA	TTS (NM_001143781)	TTS (NM_001143781)	2923	NM_001143781	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
115683	chr19	16190251	16190880	+	0	NA	exon (NM_014077, exon 3 of 4)	exon (NM_014077, exon 3 of 4)	5155	NM_014077	26017		NM_014077	ENSG00000105058	FAM32A	OTAG-12|OTAG12	family with sequence similarity 32 member A	protein-coding
90794	chr17	2170151	2170250	+	0	NA	intron (NM_001256827, intron 6 of 11)	intron (NM_001256827, intron 6 of 11)	-62478	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
2212	chr1	8712401	8713080	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	104900	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
101722	chr17	68596001	68596400	+	0	NA	intron (NM_001243746, intron 1 of 11)	intron (NM_001243746, intron 1 of 11)	5167	NM_017565	54757		NM_017565	ENSG00000108950	FAM20A	AI1G|AIGFS|FP2747	FAM20A golgi associated secretory pathway pseudokinase	protein-coding
111405	chr19	3768471	3769630	+	0	NA	TTS (NM_001319074)	TTS (NM_001319074)	3178	NM_001319074	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
68652	chr14	89960001	89960600	+	0	NA	intron (NM_018319, intron 2 of 16)	intron (NM_018319, intron 2 of 16)	4373	NM_001008744	55775		NM_018319	ENSG00000042088	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
118608	chr19	36772381	36773420	+	0	NA	promoter-TSS (NM_001267779)	promoter-TSS (NM_001267779)	-86	NM_001267779	342892		NM_001193552	ENSG00000267041	ZNF850	ZNF850P	zinc finger protein 850	protein-coding
76755	chr15	76840971	76841130	+	0	NA	intron (NR_148227, intron 5 of 32)	intron (NR_148227, intron 5 of 32)	20894	NM_001145923	49855		NM_020843	ENSG00000140386	SCAPER	IDDRP|MSTP063|ZNF291|Zfp291	S-phase cyclin A associated protein in the ER	protein-coding
42711	chr11	72675851	72676150	+	0	NA	Intergenic	Intergenic	-1578	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
164545	chr3	63965071	63965400	+	0	NA	intron (NM_001177387, intron 4 of 12)	MIRb|SINE|MIR	-2559	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
175985	chr4	81562051	81562480	+	0	NA	Intergenic	Intergenic	-90358	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
182160	chr5	56588751	56590080	+	0	NA	intron (NR_161255, intron 1 of 5)	intron (NR_161255, intron 1 of 5)	16841	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
8000	chr1	37997871	37998230	+	0	NA	exon (NM_004468, exon 4 of 6)	exon (NM_004468, exon 4 of 6)	7464	NM_004468	2275		NM_004468	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
232208	chr9	134339401	134339600	+	0	NA	intron (NM_002957, intron 1 of 9)	(GT)n|Simple_repeat|Simple_repeat	13045	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
153556	chr22	26617821	26618200	+	0	NA	promoter-TSS (NM_001887)	promoter-TSS (NM_001887)	17	NM_001887	1414		NM_001887	ENSG00000100122	CRYBB1	CATCN3|CTRCT17	crystallin beta B1	protein-coding
214970	chr7	152024501	152024730	+	0	NA	Intergenic	LTR16|LTR|ERVL	-1059	NM_001371458	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
46183	chr11	123302801	123303030	+	0	NA	Intergenic	LTR85b|LTR|Gypsy?	-55507	NM_001367419	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
162325	chr3	47512821	47514350	+	0	NA	promoter-TSS (NM_001363957)	promoter-TSS (NM_001363957)	127	NM_001031703	54859		NM_017713	ENSG00000163832	ELP6	C3orf75|TMEM103	elongator acetyltransferase complex subunit 6	protein-coding
73106	chr15	41113421	41113700	+	0	NA	intron (NR_104038, intron 1 of 34)	AluSq|SINE|Alu	2686	NR_104038	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
33979	chr10	124661321	124662050	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-42343	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
118958	chr19	38843671	38843930	+	0	NA	intron (NM_001533, intron 6 of 12)	intron (NM_001533, intron 6 of 12)	6186	NM_001533	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
226351	chr9	69820571	69821430	+	0	NA	promoter-TSS (NR_038833)	promoter-TSS (NR_038833)	183	NR_131756	138255		NM_001010940	ENSG00000204711	CFAP95	C9orf135	cilia and flagella associated protein 95	protein-coding
216304	chr8	12657321	12657580	+	0	NA	intron (NR_047662, intron 2 of 8)	intron (NR_047662, intron 2 of 8)	8161	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
97227	chr17	42819951	42820480	+	0	NA	intron (NM_001313998, intron 3 of 11)	LTR16C|LTR|ERVL	3664	NM_001313999	8678		NM_003766	ENSG00000126581	BECN1	ATG6|VPS30|beclin1	beclin 1	protein-coding
114018	chr19	10879171	10880250	+	0	NA	intron (NM_001370089, intron 1 of 14)	AluSz|SINE|Alu	7281	NM_001370089	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
140634	chr2	233468651	233468950	+	0	NA	intron (NM_001377259, intron 27 of 27)	intron (NM_001377259, intron 27 of 27)	21098	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
154098	chr22	31027121	31027380	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-36868	NR_168472	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
11885	chr1	93163621	93163880	+	0	NA	intron (NR_030761, intron 1 of 4)	AluSz|SINE|Alu	16663	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
157313	chr22	44551051	44551420	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-18105	NR_028410	388910		NM_001012986	ENSG00000187012	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
69600	chr14	97410801	97411000	+	0	NA	Intergenic	Intergenic	-47916	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
117393	chr19	19602071	19604050	+	0	NA	intron (NM_025245, intron 1 of 7)	MER74B|LTR|ERVL	15627	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
121077	chr19	45882851	45884050	+	0	NA	TTS (NM_015649)	TTS (NM_015649)	2691	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
109733	chr19	1092821	1093800	+	0	NA	intron (NM_001316323, intron 1 of 6)	CpG	2065	NM_002695	5434		NM_002695	ENSG00000099817	POLR2E	RPABC1|RPB5|XAP4|hRPB25|hsRPB5	RNA polymerase II, I and III subunit E	protein-coding
4978	chr1	24191851	24193100	+	0	NA	Intergenic	AluSq|SINE|Alu	-5186	NM_170743	163702		NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	interferon lambda receptor 1	protein-coding
106530	chr18	21179601	21179880	+	0	NA	Intergenic	Intergenic	-62502	NM_001142966	80000		NM_024935	ENSG00000141449	GREB1L	C18orf6|DFNA80|KIAA1772|RHDA3	GREB1 like retinoic acid receptor coactivator	protein-coding
216031	chr8	9368771	9369450	+	0	NA	Intergenic	Intergenic	44059	NR_040039	157273		NR_040039	ENSG00000248538	LOC157273	-	uncharacterized LOC157273	ncRNA
171453	chr3	196327021	196327280	+	0	NA	intron (NM_138461, intron 2 of 4)	intron (NM_138461, intron 2 of 4)	8818	NR_121665	100874214		NR_046724	ENSG00000235897	TM4SF19-AS1	-	TM4SF19 antisense RNA 1	ncRNA
220129	chr8	94727021	94727280	+	0	NA	intron (NM_181787, intron 2 of 18)	MER68|LTR|ERVL	7250	NM_181787	286148		NM_181787	ENSG00000156162	DPY19L4	-	dpy-19 like 4	protein-coding
93209	chr17	17825061	17825730	+	0	NA	intron (NM_001005291, intron 1 of 19)	intron (NM_001005291, intron 1 of 19)	-1765	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
160023	chr3	18414001	18414400	+	0	NA	intron (NM_001322873, intron 5 of 10)	intron (NM_001322873, intron 5 of 10)	11139	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
9152	chr1	45521181	45522580	+	0	NA	promoter-TSS (NM_181697)	promoter-TSS (NM_181697)	4	NM_181697	5052		NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
112222	chr19	5704321	5704930	+	0	NA	intron (NR_076392, intron 9 of 18)	intron (NR_076392, intron 9 of 18)	14330	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
46728	chr11	128905151	128906200	+	0	NA	promoter-TSS (NR_169216)	promoter-TSS (NR_169216)	34	NR_169216	219833		NM_145013	ENSG00000174370	KCNJ5-AS1	C11orf45	KCNJ5 antisense RNA 1	ncRNA
53546	chr12	67449251	67450030	+	0	NA	Intergenic	MamGyp-int|LTR|Gypsy	-7081	NR_146500	102724433		NR_146500	ENSG00000256172	LINC02420	-	long intergenic non-protein coding RNA 2420	ncRNA
57744	chr12	122945801	122946000	+	0	NA	intron (NM_203444, intron 6 of 11)	AluSx1|SINE|Alu	20563	NM_001243014	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
188735	chr5	157519771	157520130	+	0	NA	exon (NM_033274, exon 6 of 23)	exon (NM_033274, exon 6 of 23)	55825	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
44445	chr11	104875951	104876580	+	0	NA	Intergenic	MER21C|LTR|ERVL	22405	NR_034065	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
221274	chr8	122800101	122800300	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	18545	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
177876	chr4	128770821	128771080	+	0	NA	Intergenic	Intergenic	-38750	NM_199320	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
237434	chrX	119675201	119675400	+	0	NA	intron (NM_145799, intron 2 of 10)	intron (NM_145799, intron 2 of 10)	17868	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
238622	chrX	153951121	153951850	+	0	NA	exon (NM_005334, exon 22 of 26)	exon (NM_005334, exon 22 of 26)	-6842	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
142863	chr20	17659151	17659250	+	0	NA	exon (NM_001365613, exon 3 of 25)	exon (NM_001365613, exon 3 of 25)	23042	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
48309	chr12	8998321	8999080	+	0	NA	intron (NM_005810, intron 3 of 4)	AluJb|SINE|Alu	9075	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
30640	chr10	80456901	80457430	+	0	NA	intron (NM_001128309, intron 1 of 5)	MIR|SINE|MIR	-2120	NM_001351269	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
115784	chr19	16363321	16363850	+	0	NA	intron (NR_047665, intron 21 of 22)	MIR|SINE|MIR	38759	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
8490	chr1	40820021	40821230	+	0	NA	intron (NM_172163, intron 7 of 12)	intron (NM_172163, intron 7 of 12)	36838	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
17278	chr1	156424301	156424500	+	0	NA	intron (NR_168071, intron 2 of 4)	intron (NR_168071, intron 2 of 4)	-2631	NR_135268	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
169850	chr3	177189921	177190350	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluSx|SINE|Alu	6343	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
172428	chr4	1862101	1863280	+	0	NA	Intergenic	CpG	-6534	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
2681	chr1	10543921	10544600	+	0	NA	intron (NM_004565, intron 3 of 8)	intron (NM_004565, intron 3 of 8)	69310	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
89842	chr16	89589221	89589930	+	0	NA	intron (NM_153636, intron 10 of 14)	intron (NM_153636, intron 10 of 14)	13817	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
109634	chr19	993251	993350	+	0	NA	intron (NM_001372085, intron 10 of 11)	intron (NM_001372085, intron 10 of 11)	-7119	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
227245	chr9	89319971	89320330	+	0	NA	intron (NM_001282689, intron 2 of 16)	AluSx1|SINE|Alu	1299	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
19453	chr1	174849001	174849200	+	0	NA	intron (NM_001366447, intron 19 of 20)	L1PA2|LINE|L1	-25286	NM_001243763	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
140733	chr2	234452151	234452700	+	0	NA	intron (NR_146988, intron 1 of 2)	(TG)n|Simple_repeat|Simple_repeat	2170	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
65225	chr14	49844551	49844850	+	0	NA	intron (NM_001301732, intron 4 of 31)	(ATTT)n|Simple_repeat|Simple_repeat	8088	NM_004713	9147		NM_004713	ENSG00000165525	NEMF	IDDSAPN|NY-CO-1|RQC2|SDCCAG1	nuclear export mediator factor	protein-coding
27150	chr10	28333901	28334700	+	0	NA	Intergenic	Intergenic	-31236	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
85613	chr16	53849651	53849750	+	0	NA	intron (NR_156761, intron 3 of 4)	intron (NR_156761, intron 3 of 4)	145544	NM_001080432	79068		NM_001080432	ENSG00000140718	FTO	ALKBH9|BMIQ14|GDFD|IFEX9	FTO alpha-ketoglutarate dependent dioxygenase	protein-coding
115266	chr19	14542401	14542600	+	0	NA	intron (NM_138501, intron 1 of 12)	AluSq|SINE|Alu	12906	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
68917	chr14	91363571	91364050	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	54010	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
219715	chr8	81004751	81005400	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	106993	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
34911	chr11	401021	401850	+	0	NA	intron (NM_007183, intron 8 of 12)	CpG-3735	7226	NM_007183	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
49226	chr12	19128351	19128730	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-1193	NM_019012	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
6849	chr1	31056451	31056700	+	0	NA	intron (NM_014676, intron 2 of 21)	intron (NM_014676, intron 2 of 21)	9142	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
121226	chr19	46629421	46630150	+	0	NA	Intergenic	Intergenic	-4696	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
187117	chr5	140409571	140409750	+	0	NA	intron (NM_020690, intron 1 of 35)	AluSc8|SINE|Alu	7827	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
94539	chr17	29580271	29581650	+	0	NA	intron (NM_001085454, intron 7 of 20)	AluSp|SINE|Alu	8688	NM_014030	28964		NM_014030	ENSG00000108262	GIT1	p95-APP1	GIT ArfGAP 1	protein-coding
195559	chr6	37488221	37488950	+	0	NA	intron (NM_138493, intron 1 of 3)	intron (NM_138493, intron 1 of 3)	11308	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
205438	chr7	16982471	16982850	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-100677	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
27411	chr10	31362921	31363400	+	0	NA	exon (NM_001368169, exon 2 of 2)	exon (NM_001368169, exon 2 of 2)	36595	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
130768	chr2	86830201	86830500	+	0	NA	intron (NM_172101, intron 5 of 6)	AluSz6|SINE|Alu	-21954	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
200572	chr6	136286701	136287390	+	0	NA	intron (NM_001301038, intron 1 of 12)	AluSz6|SINE|Alu	2801	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
213025	chr7	131030151	131030250	+	0	NA	intron (NR_109850, intron 3 of 5)	AluJb|SINE|Alu	76830	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
60204	chr13	40439171	40439730	+	0	NA	intron (NR_024506, intron 5 of 5)	MIR|SINE|MIR	41556	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
63799	chr14	21379271	21379430	+	0	NA	intron (NM_007192, intron 1 of 25)	AluSz6|SINE|Alu	4669	NM_007192	11198		NM_007192	ENSG00000092201	SUPT16H	CDC68|FACTP140|NEDDFAC|SPT16|SPT16/CDC68	SPT16 homolog, facilitates chromatin remodeling subunit	protein-coding
94768	chr17	30827071	30827600	+	0	NA	Intergenic	AluJo|SINE|Alu	-2575	NR_073118	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
156708	chr22	41720151	41720450	+	0	NA	intron (NM_152513, intron 6 of 30)	L2b|LINE|L2	20797	NM_152513	150365		NM_152513	ENSG00000167077	MEI1	HYDM3|SPATA38	meiotic double-stranded break formation protein 1	protein-coding
95483	chr17	36210321	36211300	+	0	NA	promoter-TSS (NM_001291468).4	promoter-TSS (NM_001291468).4	-98	NM_207007	388372		NM_207007		CCL4L1	AT744.2|CCL4L|LAG-1|LAG1|MIP-1-beta|SCYA4L|SCYA4L1|SCYA4L2	C-C motif chemokine ligand 4 like 1	protein-coding
223294	chr8	143769651	143769950	+	0	NA	intron (NM_001381874, intron 3 of 13)	intron (NM_001381874, intron 3 of 13)	-9292	NR_136279	105375800		NR_136279		LOC105375800	-	SREBF pathway regulator in golgi 1 pseudogene	pseudo
21962	chr1	208242721	208243800	+	0	NA	intron (NM_025179, intron 1 of 31)	CpG	1124	NM_025179	5362		NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
48107	chr12	7751451	7751980	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-2174	NM_203503	170482		NM_130441	ENSG00000198178	CLEC4C	BDCA-2|BDCA2|CD303|CLECSF11|CLECSF7|DLEC|HECL|PRO34150	C-type lectin domain family 4 member C	protein-coding
13293	chr1	113071521	113071780	+	0	NA	intron (NR_103777, intron 1 of 2)	AluSx|SINE|Alu	1452	NR_103777	100996251		NR_103777	ENSG00000238198	LRIG2-DT	-	LRIG2 divergent transcript	ncRNA
132838	chr2	110679951	110680250	+	0	NA	Intergenic	Intergenic	-1993	NM_001278617	699		NM_004336	ENSG00000169679	BUB1	BUB1A|BUB1L|MCPH30|hBUB1	BUB1 mitotic checkpoint serine/threonine kinase	protein-coding
17758	chr1	159021271	159021830	+	0	NA	intron (NM_001376587, intron 6 of 11)	L1PB1|LINE|L1	11643	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
69479	chr14	95452471	95452630	+	0	NA	intron (NM_001384284, intron 6 of 8)	intron (NM_001384284, intron 6 of 8)	47990	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
58846	chr12	132900401	132900600	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	12658	NR_110919	101928530		NR_110919	ENSG00000236617	CHFR-DT	-	CHFR divergent transcript	ncRNA
77326	chr15	82502821	82503450	+	0	NA	intron (NR_026811, intron 1 of 7)	intron (NR_026811, intron 1 of 7)	10860	NR_102747	727751		NR_102747		LOC727751	-	golgin A2 pseudogene	pseudo
123097	chr19	51472921	51473350	+	0	NA	Intergenic	Intergenic	-5508	NM_001278392	729767		NM_001080405	ENSG00000213822	CEACAM18	-	CEA cell adhesion molecule 18	protein-coding
116880	chr19	18665421	18665880	+	0	NA	intron (NM_001345984, intron 2 of 3)	intron (NM_001345984, intron 2 of 3)	-18030	NM_015321	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
135735	chr2	169468721	169469330	+	0	NA	Intergenic	Intergenic	-10469	NM_152384	129880		NM_152384	ENSG00000163093	BBS5	-	Bardet-Biedl syndrome 5	protein-coding
200465	chr6	135136801	135137200	+	0	NA	Intergenic	MIRc|SINE|MIR	-44308	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
217485	chr8	29025051	29025700	+	0	NA	intron (NM_001324391, intron 6 of 10)	intron (NM_001324391, intron 6 of 10)	134061	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
30011	chr10	73774541	73775530	+	0	NA	intron (NM_173540, intron 2 of 2)	intron (NM_173540, intron 2 of 2)	2744	NM_001284194	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
139852	chr2	230496871	230497530	+	0	NA	intron (NM_001080391, intron 18 of 28)	intron (NM_001080391, intron 18 of 28)	80444	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
76275	chr15	74096621	74098000	+	0	NA	intron (NR_160652, intron 4 of 4)	intron (NR_160652, intron 4 of 4)	2896	NR_160652	732265		NR_160652		COMMD4P2	-	COMM domain containing 4 pseudogene 2	pseudo
224121	chr9	4666051	4666950	+	0	NA	promoter-TSS (NR_148445)	promoter-TSS (NR_148445)	-20	NR_148444	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
36313	chr11	3858371	3858700	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	2473	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
141389	chr2	240819871	240821700	+	0	NA	promoter-TSS (NM_001330290)	promoter-TSS (NM_001330290)	254	NM_001379645	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
182019	chr5	55407001	55407300	+	0	NA	intron (NM_015360, intron 22 of 26)	intron (NM_015360, intron 22 of 26)	99161	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
55511	chr12	105046021	105046100	+	0	NA	intron (NR_027752, intron 15 of 22)	intron (NR_027752, intron 15 of 22)	38398	NM_001034173	160428		NM_001034173	ENSG00000136010	ALDH1L2	mtFDH	aldehyde dehydrogenase 1 family member L2	protein-coding
91966	chr17	7393521	7395070	+	0	NA	intron (NM_001369407, intron 1 of 7)	CpG-10617	230	NM_020360	57048		NM_020360	ENSG00000187838	PLSCR3	-	phospholipid scramblase 3	protein-coding
51519	chr12	52243921	52244800	+	0	NA	TTS (NR_146274)	TTS (NR_146274)	3088	NR_146274	109729127		NR_146274	ENSG00000257671	KRT7-AS	-	KRT7 antisense RNA 1	ncRNA
217618	chr8	30014521	30014780	+	0	NA	Intergenic	Intergenic	-57302	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
74656	chr15	60922821	60923080	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	241381	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
168126	chr3	138848001	138848200	+	0	NA	Intergenic	AluY|SINE|Alu	-13172	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
235107	chrX	40573671	40574130	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-7070	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
105109	chr17	82203621	82204380	+	0	NA	intron (NM_001367828, intron 1 of 16)	intron (NM_001367828, intron 1 of 16)	8842	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
39244	chr11	57676771	57677130	+	0	NA	intron (NM_015457, intron 2 of 11)	AluY|SINE|Alu	8836	NM_015457	25921		NM_015457	ENSG00000156599	ZDHHC5	DHHC5|ZNF375	zinc finger DHHC-type palmitoyltransferase 5	protein-coding
226857	chr9	78029471	78030300	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	1926	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
43005	chr11	73976501	73977150	+	0	NA	exon (NM_001381943, exon 6 of 9)	exon (NM_001381943, exon 6 of 9)	6018	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
148319	chr20	63747071	63747550	+	0	NA	intron (NM_025224, intron 4 of 4)	intron (NM_025224, intron 4 of 4)	7534	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
144603	chr20	35814651	35814950	+	0	NA	intron (NM_016436, intron 2 of 17)	AluYa5|SINE|Alu	42785	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
182313	chr5	58887621	58887880	+	0	NA	Intergenic	Intergenic	112148	NM_001197223	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
141083	chr2	238296151	238296250	+	0	NA	Intergenic	Intergenic	-7590	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
202469	chr6	158226621	158227080	+	0	NA	Intergenic	L3|LINE|CR1	58500	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
164321	chr3	57758171	57758330	+	0	NA	intron (NR_165328, intron 2 of 22)	intron (NR_165328, intron 2 of 22)	994	NM_001304421	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
78649	chr15	94278751	94279050	+	0	NA	intron (NM_001385002, intron 2 of 23)	L1PA15|LINE|L1	47339	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
132467	chr2	105877971	105878630	+	0	NA	intron (NM_001004722, intron 3 of 3)	MLT1B|LTR|ERVL-MaLR	26453	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
178220	chr4	142700451	142701230	+	0	NA	intron (NM_001385336, intron 2 of 26)	intron (NM_001385336, intron 2 of 26)	-140085	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
96884	chr17	42106621	42106880	+	0	NA	intron (NM_024119, intron 8 of 13)	AluSx|SINE|Alu	5964	NM_024119	79132		NM_024119	ENSG00000108771	DHX58	D11LGP2|D11lgp2e|LGP2|RLR-3	DExH-box helicase 58	protein-coding
131594	chr2	96866551	96867080	+	0	NA	intron (NM_017789, intron 2 of 14)	intron (NM_017789, intron 2 of 14)	3265	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
28034	chr10	43230921	43232280	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	-1861	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
179930	chr5	760771	760930	+	0	NA	intron (NM_001351303, intron 4 of 13)	intron (NM_001351303, intron 4 of 13)	23879	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
72247	chr15	30524001	30524200	+	0	NA	promoter-TSS (NM_001365376).7	promoter-TSS (NM_001365376).7	-527	NM_001365376								
208593	chr7	72940201	72940600	+	0	NA	intron (NM_172020, intron 9 of 13)	intron (NM_172020, intron 9 of 13)	14363	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
180015	chr5	1020721	1020980	+	0	NA	intron (NM_001271082, intron 3 of 10).2	intron (NM_001271082, intron 3 of 10).2	11888	NM_001271082	85409		NM_033120	ENSG00000145506	NKD2	Naked2	NKD inhibitor of WNT signaling pathway 2	protein-coding
62043	chr13	91134271	91134530	+	0	NA	intron (NR_047004, intron 2 of 3)	intron (NR_047004, intron 2 of 3)	-44783	NR_104057	101930747		NR_104057		LINC00380	-	long intergenic non-protein coding RNA 380	ncRNA
147161	chr20	56429371	56430330	+	0	NA	intron (NM_001164114, intron 1 of 5)	intron (NM_001164114, intron 1 of 5)	17590	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
9540	chr1	51507471	51507630	+	0	NA	intron (NM_001981, intron 1 of 24)	AluSg|SINE|Alu	11716	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
157160	chr22	42890351	42891250	+	0	NA	intron (NM_001349972, intron 4 of 10)	intron (NM_001349972, intron 4 of 10)	-33527	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
12468	chr1	107862151	107862250	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-35023	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
144953	chr20	37095501	37096950	+	0	NA	promoter-TSS (NM_002895)	promoter-TSS (NM_002895)	-228	NM_002895	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
214699	chr7	150989771	150989930	+	0	NA	Intergenic	Intergenic	-1167	NM_000603	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
148013	chr20	63082151	63082950	+	0	NA	non-coding (NR_033370, exon 3 of 5)	non-coding (NR_033370, exon 3 of 5)	-18742	NR_003244	768096		NR_003244		HAR1A	HAR1F|LINC00064|NCRNA00064	highly accelerated region 1A	ncRNA
67240	chr14	68968001	68968980	+	0	NA	intron (NM_001130004, intron 1 of 21)	L1ME3Cz|LINE|L1	10812	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
198643	chr6	107802151	107803130	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	21673	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
54859	chr12	95498951	95499250	+	0	NA	intron (NM_006838, intron 7 of 10)	L1MB3|LINE|L1	24948	NM_001317183	10988		NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
12100	chr1	100027951	100028050	+	0	NA	3' UTR (NM_012243, exon 8 of 8)	3' UTR (NM_012243, exon 8 of 8)	-10095	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
35681	chr11	1883701	1884200	+	0	NA	exon (NM_002339, exon 5 of 11)	exon (NM_002339, exon 5 of 11)	3905	NR_107001	102465993		NR_107001	ENSG00000284594	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
41617	chr11	66420571	66420730	+	0	NA	promoter-TSS (NM_001318804)	promoter-TSS (NM_001318804)	-354	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
135869	chr2	170966971	170967430	+	0	NA	TTS (NM_001201428)	TTS (NM_001201428)	37947	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
31689	chr10	97534651	97535030	+	0	NA	intron (NM_024954, intron 1 of 2)	intron (NM_024954, intron 1 of 2)	35916	NM_024954	80019		NM_024954	ENSG00000165886	UBTD1	-	ubiquitin domain containing 1	protein-coding
177849	chr4	128057921	128058250	+	0	NA	Intergenic	AluSz|SINE|Alu	-3227	NM_178043	55132		NM_018078	ENSG00000138709	LARP1B	LARP2	La ribonucleoprotein 1B	protein-coding
205867	chr7	24981321	24982280	+	0	NA	Intergenic	CpG	-1622	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
167412	chr3	129003551	129004400	+	0	NA	promoter-TSS (NM_001348521)	promoter-TSS (NM_001348521)	27	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
162541	chr3	48632371	48632530	+	0	NA	intron (NM_134263, intron 4 of 20)	intron (NM_134263, intron 4 of 20)	1248	NR_106882	102465495		NR_106882	ENSG00000284364	MIR6824	hsa-mir-6824	microRNA 6824	ncRNA
46830	chr11	131342351	131342450	+	0	NA	Intergenic	Intergenic	-28215	NM_001352001	50863		NM_016522	ENSG00000182667	NTM	CEPU-1|HNT|IGLON2|NTRI	neurotrimin	protein-coding
228326	chr9	98391821	98392080	+	0	NA	intron (NM_005458, intron 9 of 18)	L2c|LINE|L2	-136301	NM_001267571	55357		NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
233526	chrX	17601	18080	+	0	NA	Intergenic	Intergenic	-258516	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
199475	chr6	118565351	118565800	+	0	NA	exon (NM_001178035, exon 4 of 14)	exon (NM_001178035, exon 4 of 14)	17279	NM_002667	5350		NM_002667	ENSG00000198523	PLN	CMD1P|CMH18|PLB	phospholamban	protein-coding
61862	chr13	77010271	77010630	+	0	NA	intron (NM_012158, intron 4 of 4)	MLT1E2|LTR|ERVL-MaLR	16709	NM_012158	26224		NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A|IDDSFAS	F-box and leucine rich repeat protein 3	protein-coding
186508	chr5	138343821	138344430	+	0	NA	intron (NM_001350194, intron 3 of 4)	intron (NM_001350194, intron 3 of 4)	-5770	NM_001364026	995		NM_001790	ENSG00000158402	CDC25C	CDC25|PPP1R60	cell division cycle 25C	protein-coding
76622	chr15	75503721	75504150	+	0	NA	intron (NM_002833, intron 7 of 12)	SVA_D|Retroposon|SVA	-48120	NM_001145357	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
155218	chr22	37893551	37894200	+	0	NA	Intergenic	Intergenic	-12422	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
68725	chr14	90817871	90818600	+	0	NA	Intergenic	L2a|LINE|L2	-1805	NM_001010854	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
115298	chr19	14585201	14585450	+	0	NA	intron (NM_207390, intron 2 of 12)	intron (NM_207390, intron 2 of 12)	2241	NR_109784	388512		NM_207390	ENSG00000187912	CLEC17A	-	C-type lectin domain containing 17A	protein-coding
130796	chr2	86860851	86863280	+	0	NA	promoter-TSS (NM_004931)	promoter-TSS (NM_004931)	-141	NM_001178100	926		NM_004931	ENSG00000172116	CD8B	CD8B1|CD8beta|LEU2|LY3|LYT3|Ly-3|P37	CD8 subunit beta	protein-coding
47195	chr12	812371	812650	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	59587	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
3106	chr1	12227771	12227930	+	0	NA	Intergenic	AluJr|SINE|Alu	-2180	NM_015378	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
158902	chr3	9944601	9945050	+	0	NA	TTS (NR_134900)	TTS (NR_134900)	-2579	NR_046734	100874032		NR_046734	ENSG00000230082	PRRT3-AS1	-	PRRT3 antisense RNA 1	ncRNA
144704	chr20	36489551	36489850	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	27905	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
119181	chr19	39421901	39422100	+	0	NA	intron (NM_022835, intron 16 of 18)	AluSx1|SINE|Alu	8221	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
73939	chr15	51629671	51630030	+	0	NA	Intergenic	Intergenic	-7079	NR_165648	23312		NM_015263	ENSG00000104093	DMXL2	DEE81|DFNA71|EIEE81|PEPNS|RC3	Dmx like 2	protein-coding
175492	chr4	73245301	73245500	+	0	NA	intron (NM_032217, intron 1 of 33)	MLT1E3|LTR|ERVL-MaLR	13398	NM_015574	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
238400	chrX	150486021	150486300	+	0	NA	intron (NM_001177466, intron 3 of 5)	MLT1L|LTR|ERVL-MaLR	40706	NM_001177466	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
28817	chr10	62264721	62265130	+	0	NA	intron (NM_001282941, intron 1 of 4)	intron (NM_001282941, intron 1 of 4)	3919	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
80756	chr16	3158301	3159370	+	0	NA	Intergenic	CpG	14544	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
151203	chr21	45133951	45134350	+	0	NA	intron (NR_073200, intron 2 of 12)	CpG	-18380	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
146406	chr20	49333821	49334280	+	0	NA	Intergenic	Intergenic	53367	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
199562	chr6	118890901	118891630	+	0	NA	intron (NM_001378357, intron 8 of 13)	intron (NM_001378357, intron 8 of 13)	-2887	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
81058	chr16	4323401	4323600	+	0	NA	intron (NM_032575, intron 1 of 6).2	intron (NM_032575, intron 1 of 6).2	4840	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
47160	chr12	770571	771550	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSc8|SINE|Alu	18137	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
196028	chr6	42032801	42033000	+	0	NA	intron (NM_001287434, intron 1 of 4)	MLT1N2|LTR|ERVL-MaLR	15994	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
158652	chr3	5010701	5011130	+	0	NA	Intergenic	MIRb|SINE|MIR	-30954	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
73288	chr15	41867021	41867280	+	0	NA	promoter-TSS (NR_036195)	promoter-TSS (NR_036195)	-599	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
169782	chr3	172747451	172747750	+	0	NA	Intergenic	AluY|SINE|Alu	-3085	NM_001258316	1894		NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
198744	chr6	108561971	108562150	+	0	NA	intron (NM_201559, intron 2 of 3)	CpG-23918	1143	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
47408	chr12	2884171	2884530	+	0	NA	intron (NR_027365, intron 1 of 1)	AluSz6|SINE|Alu	-6541	NM_001160408	7289		NM_003324	ENSG00000078246	TULP3	HRCDF|TUBL3	TUB like protein 3	protein-coding
101895	chr17	74369181	74369850	+	0	NA	exon (NM_181790, exon 2 of 4)	exon (NM_181790, exon 2 of 4)	2009	NM_001331077	350383		NM_181790	ENSG00000257008	GPR142	GPRg1b|PGR2	G protein-coupled receptor 142	protein-coding
188863	chr5	159310371	159310930	+	0	NA	Intergenic	Intergenic	19837	NM_002187	3593		NM_002187	ENSG00000113302	IL12B	CLMF|CLMF2|IL-12B|IMD28|IMD29|NKSF|NKSF2	interleukin 12B	protein-coding
34623	chr10	133288971	133289130	+	0	NA	intron (NM_001256618, intron 8 of 16)	intron (NM_001256618, intron 8 of 16)	-12182	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
92947	chr17	17015221	17015600	+	0	NA	Intergenic	MIR|SINE|MIR	-27047	NM_001364716	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
138742	chr2	214805921	214806630	+	0	NA	intron (NR_104212, intron 1 of 9)	MamRTE1|LINE|RTE-BovB	3408	NM_001282549	580		NM_000465	ENSG00000138376	BARD1	-	BRCA1 associated RING domain 1	protein-coding
109601	chr19	930001	930200	+	0	NA	intron (NM_005224, intron 2 of 8)	AluJo|SINE|Alu	4065	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
40370	chr11	63989771	63989930	+	0	NA	intron (NR_003089, intron 3 of 5)	AluYc3|SINE|Alu	3997	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
12721	chr1	109529701	109530100	+	0	NA	Intergenic	Intergenic	-9972	NM_031936	83873		NM_031936	ENSG00000156097	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
178526	chr4	150963971	150964130	+	0	NA	intron (NM_001367550, intron 2 of 56)	SVA_B|Retroposon|SVA	51217	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
139564	chr2	224933221	224934000	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	13439	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
142735	chr20	10306951	10307330	+	0	NA	3' UTR (NM_001322902, exon 8 of 8)	3' UTR (NM_001322902, exon 8 of 8)	-87634	NR_040710	100131208		NR_040710	ENSG00000227906	SNAP25-AS1	-	SNAP25 antisense RNA 1	ncRNA
147652	chr20	62219171	62219430	+	0	NA	intron (NM_007232, intron 1 of 2)	CpG	978	NM_007232	11255		NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
37353	chr11	14969801	14970100	+	0	NA	exon (NM_001033953, exon 3 of 5)	exon (NM_001033953, exon 3 of 5)	2401	NM_001741	796		NM_001741	ENSG00000110680	CALCA	CALC1|CGRP|CGRP-I|CGRP-alpha|CGRP1|CT|KC|PCT	calcitonin related polypeptide alpha	protein-coding
152184	chr22	20103021	20103330	+	0	NA	intron (NM_022720, intron 9 of 13)	L1ME1|LINE|L1	11576	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
48339	chr12	9239851	9240980	+	0	NA	promoter-TSS (NR_036262)	promoter-TSS (NR_036262)	412	NR_137430	100499405		NR_036466	ENSG00000237248	LINC00987	-	long intergenic non-protein coding RNA 987	ncRNA
8493	chr1	40826801	40827000	+	0	NA	intron (NM_004700, intron 9 of 13)	MIR3|SINE|MIR	35463	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
109951	chr19	1374951	1375280	+	0	NA	intron (NM_001369790, intron 14 of 14)	AluSc|SINE|Alu	-8792	NM_024407	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
116207	chr19	17496001	17496850	+	0	NA	intron (NR_147835, intron 1 of 2)	intron (NR_147835, intron 1 of 2)	-15224	NM_012088	25796		NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
237401	chrX	119582601	119583000	+	0	NA	intron (NM_181762, intron 4 of 4)	intron (NM_181762, intron 4 of 4)	8237	NM_001282161	7319		NM_003336	ENSG00000077721	UBE2A	HHR6A|MRXS30|MRXSN|RAD6A|UBC2	ubiquitin conjugating enzyme E2 A	protein-coding
185597	chr5	131409751	131410600	+	0	NA	Intergenic	AluSc|SINE|Alu	146122	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
140865	chr2	237464751	237465080	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-21495	NM_001281474	79083		NM_024101	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding
147902	chr20	62890821	62891700	+	0	NA	intron (NM_001193369, intron 14 of 15)	intron (NM_001193369, intron 14 of 15)	-8357	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
233220	chr9	137232701	137232900	+	0	NA	exon (NM_001177317, exon 5 of 13)	exon (NM_001177317, exon 5 of 13)	1867	NM_080877	142680		NM_080877	ENSG00000198569	SLC34A3	HHRH|NPT2C|NPTIIc	solute carrier family 34 member 3	protein-coding
93239	chr17	17860071	17861000	+	0	NA	intron (NM_001288789, intron 9 of 12)	intron (NM_001288789, intron 9 of 12)	-23524	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
177221	chr4	108512721	108513390	+	0	NA	Intergenic	Intergenic	-44178	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
160323	chr3	27630951	27631550	+	0	NA	Intergenic	Kanga2_a|DNA|TcMar-Tc2	91073	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
59373	chr13	24708871	24709850	+	0	NA	intron (NM_001185085, intron 17 of 22)	intron (NM_001185085, intron 17 of 22)	28949	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
55759	chr12	108519271	108519930	+	0	NA	3' UTR (NM_007076, exon 3 of 3)	3' UTR (NM_007076, exon 3 of 3)	4323	NM_007076	11153		NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain protein adenylyltransferase	protein-coding
236166	chrX	64976151	64976950	+	0	NA	promoter-TSS (NM_018684)	promoter-TSS (NM_018684)	-17	NM_001178033	55906		NM_018684	ENSG00000126970	ZC4H2	HCA127|KIAA1166|MCS|MRXS4|WRWF|WRWFFR|WWS	zinc finger C4H2-type containing	protein-coding
129228	chr2	68248101	68248300	+	0	NA	intron (NM_000945, intron 1 of 5)	L2c|LINE|L2	4332	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
51751	chr12	53266571	53266730	+	0	NA	Intergenic	Intergenic	-1649	NM_012291	9700		NM_012291	ENSG00000135476	ESPL1	ESP1|SEPA	extra spindle pole bodies like 1, separase	protein-coding
12883	chr1	110253221	110253480	+	0	NA	Intergenic	Intergenic	43036	NM_001377331	3749		NM_004978	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	potassium voltage-gated channel subfamily C member 4	protein-coding
121377	chr19	46864771	46865130	+	0	NA	intron (NM_004491, intron 1 of 6)	intron (NM_004491, intron 1 of 6)	3953	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
117093	chr19	19147871	19148430	+	0	NA	intron (NM_001145785, intron 3 of 8)	intron (NM_001145785, intron 3 of 8)	-9672	NM_001256766	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
16718	chr1	155242801	155243000	+	0	NA	intron (NM_001005741, intron 1 of 11).2	intron (NM_001005741, intron 1 of 11).2	-1651	NM_000157	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
69630	chr14	97706821	97707100	+	0	NA	Intergenic	Intergenic	-20302	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
157013	chr22	42528851	42529350	+	0	NA	Intergenic	MER39B|LTR|ERV1	-9304	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
128938	chr2	64536421	64536680	+	0	NA	intron (NM_203437, intron 1 of 9)	AluSx|SINE|Alu	11037	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
216331	chr8	13134901	13135100	+	0	NA	intron (NM_182643, intron 5 of 17)	intron (NM_182643, intron 5 of 17)	-1711	NM_006094	10395		NM_006094	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
140601	chr2	233397971	233398330	+	0	NA	intron (NM_003648, intron 2 of 28)	AluY|SINE|Alu	9996	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
148160	chr20	63522421	63523000	+	0	NA	TTS (NM_001353423)	TTS (NM_001353423)	1945	NM_024299	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
136660	chr2	180404071	180404230	+	0	NA	Intergenic	HSMAR2|DNA|TcMar-Mariner	-287954	NR_104323	101669767		NR_104319	ENSG00000281131	SCHLAP1	LINC00913|PCAT11|PCAT114	SWI/SNF complex antagonist associated with prostate cancer 1	ncRNA
173400	chr4	7987101	7987720	+	0	NA	intron (NM_001286688, intron 11 of 14)	AluJr|SINE|Alu	17971	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
154398	chr22	35310501	35312150	+	0	NA	intron (NR_156428, intron 1 of 13)	MLT1L|LTR|ERVL-MaLR	11431	NR_156428	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
216004	chr8	8921601	8922200	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-28270	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
150950	chr21	44303271	44303880	+	0	NA	intron (NM_002626, intron 1 of 21)	intron (NM_002626, intron 1 of 21)	3522	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
114318	chr19	11994151	11994650	+	0	NA	intron (NR_134929, intron 1 of 2)	AluJb|SINE|Alu	6783	NR_134928	101928464		NR_134927	ENSG00000219665	ZNF433-AS1	-	ZNF433 and ZNF878 antisense RNA 1	ncRNA
226051	chr9	60910301	60910500	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-4007	NM_001113541	727905		NM_001113541	ENSG00000276581	SPATA31A5	FAM75A5	SPATA31 subfamily A member 5	protein-coding
185411	chr5	129767901	129768130	+	0	NA	Intergenic	Intergenic	19921	NM_001257308	100127206		NM_001257308	ENSG00000186367	MINAR2	DFNB120|KIAA1024L	membrane integral NOTCH2 associated receptor 2	protein-coding
6069	chr1	27148851	27149200	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	6100	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
201642	chr6	149471471	149472280	+	0	NA	intron (NM_207360, intron 2 of 5)	intron (NM_207360, intron 2 of 5)	13139	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
59425	chr13	25368751	25368860	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-3169	NM_016529	51761		NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
73136	chr15	41336351	41336930	+	0	NA	intron (NM_001243144, intron 1 of 8)	L2a|LINE|L2	3759	NM_018454	51203		NM_016359	ENSG00000137804	NUSAP1	ANKT|BM037|LNP|NUSAP|PRO0310p1|Q0310|SAPL	nucleolar and spindle associated protein 1	protein-coding
89065	chr16	88456001	88456700	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	3070	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
162025	chr3	46565671	46566350	+	0	NA	intron (NM_024512, intron 1 of 8)	CpG	292	NM_024512	79442		NM_024512	ENSG00000163827	LRRC2	-	leucine rich repeat containing 2	protein-coding
160247	chr3	23981551	23982800	+	0	NA	Intergenic	MER52D|LTR|ERV1	-35613	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
166916	chr3	125018671	125019630	+	0	NA	intron (NM_020733, intron 5 of 16)	AluSq2|SINE|Alu	36847	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
14593	chr1	145221521	145221800	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5608	NR_111955	103091866		NR_111954		LINC01145	-	long intergenic non-protein coding RNA 1145	ncRNA
8003	chr1	38001071	38002000	+	0	NA	intron (NM_004468, intron 1 of 5)	intron (NM_004468, intron 1 of 5)	3979	NM_004468	2275		NM_004468	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
145838	chr20	45835871	45836280	+	0	NA	intron (NM_152897, intron 3 of 4)	intron (NM_152897, intron 3 of 4)	2276	NM_001042633	90203		NM_033421	ENSG00000124104	SNX21	C20orf161|PP3993|SNX-L|SNXL|dJ337O18.4	sorting nexin family member 21	protein-coding
230452	chr9	128181621	128182050	+	0	NA	intron (NM_001257975, intron 5 of 17)	LTR13|LTR|ERVK	9737	NM_001257976	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
191592	chr6	12041671	12042030	+	0	NA	intron (NM_002114, intron 2 of 8)	AluSc8|SINE|Alu	29538	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
93988	chr17	21983671	21984080	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-219120	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
206587	chr7	35714651	35715380	+	0	NA	Intergenic	Intergenic	-1422	NR_108083	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
26451	chr10	17453071	17453830	+	0	NA	intron (NR_144322, intron 2 of 6)	CpG	1145	NM_001345961	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
140951	chr2	237766051	237766350	+	0	NA	TTS (NM_004735)	TTS (NM_004735)	-32579	NM_001080504	375316		NM_198852	ENSG00000177483	RBM44	-	RNA binding motif protein 44	protein-coding
123891	chr19	55324921	55325730	+	0	NA	promoter-TSS (NM_001085488)	promoter-TSS (NM_001085488)	16	NM_001085488	284417		NM_001085488	ENSG00000180061	TMEM150B	DRAM3|TMEM224|TTN2	transmembrane protein 150B	protein-coding
136589	chr2	178306401	178306650	+	0	NA	intron (NM_001201481, intron 3 of 23)	intron (NM_001201481, intron 3 of 23)	-13717	NM_145739	114880		NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
158161	chr22	50204401	50204600	+	0	NA	intron (NM_031454, intron 1 of 8)	AluSz|SINE|Alu	3489	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
150600	chr21	43357571	43357730	+	0	NA	TTS (NR_131902)	TTS (NR_131902)	4699	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
109865	chr19	1234301	1234500	+	0	NA	intron (NM_152769, intron 6 of 8)	intron (NM_152769, intron 6 of 8)	3605	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
89090	chr16	88479651	88480750	+	0	NA	intron (NM_153813, intron 1 of 9)	L2b|LINE|L2	11282	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
205061	chr7	6601921	6602980	+	0	NA	intron (NM_001303039, intron 6 of 6)	intron (NM_001303039, intron 6 of 6)	12429	NM_001303039	79034		NM_024067	ENSG00000146576	INTS15	C7orf26	integrator complex subunit 15	protein-coding
50730	chr12	48977351	48979080	+	0	NA	promoter-TSS (NM_005430)	promoter-TSS (NM_005430)	-107	NM_005430	7471		NM_005430	ENSG00000125084	WNT1	BMND16|INT1|OI15	Wnt family member 1	protein-coding
5347	chr1	25267401	25268900	+	0	NA	promoter-TSS (NR_135777)	promoter-TSS (NR_135777)	-225	NR_135777	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
115560	chr19	15608121	15608330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6993	NM_007253	11283		NM_007253	ENSG00000186526	CYP4F8	CPF8|CYPIVF8	cytochrome P450 family 4 subfamily F member 8	protein-coding
56193	chr12	111443501	111443780	+	0	NA	intron (NM_001291424, intron 1 of 6)	intron (NM_001291424, intron 1 of 6)	8778	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
121520	chr19	47221571	47222330	+	0	NA	intron (NM_001127242, intron 1 of 1)	intron (NM_001127242, intron 1 of 1)	-4992	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
94421	chr17	29124101	29125450	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	15614	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
236198	chrX	65675471	65675630	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	7896	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
72898	chr15	40337721	40338800	+	0	NA	intron (NM_207380, intron 5 of 10)	intron (NM_207380, intron 5 of 10)	2707	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
4786	chr1	23559001	23560730	+	0	NA	promoter-TSS (NM_002167)	promoter-TSS (NM_002167)	-364	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
104508	chr17	81228871	81229030	+	0	NA	non-coding (NR_135654, exon 1 of 4)	non-coding (NR_135654, exon 1 of 4)	243	NR_135654	105371925		NR_135654		LOC105371925	-	uncharacterized LOC105371925	ncRNA
22738	chr1	224340951	224341900	+	0	NA	Intergenic	L1M4|LINE|L1	-11236	NM_206840	4931		NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP like	protein-coding
109739	chr19	1102571	1103180	+	0	NA	Intergenic	Intergenic	-1119	NM_002085	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
37634	chr11	20548771	20548930	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-50758	NM_004211	9152		NM_004211	ENSG00000165970	SLC6A5	GLYT-2|GLYT2|HKPX3|NET1	solute carrier family 6 member 5	protein-coding
117399	chr19	19614821	19615850	+	0	NA	intron (NM_025245, intron 1 of 7)	AluJo|SINE|Alu	3352	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
157319	chr22	44616751	44617450	+	0	NA	intron (NR_044991, intron 3 of 4)	intron (NR_044991, intron 3 of 4)	8319	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
160029	chr3	18422771	18424210	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	1849	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
128074	chr2	47867971	47868580	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluSx|SINE|Alu	20444	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
206806	chr7	36937971	36938500	+	0	NA	intron (NM_014800, intron 16 of 21)	Tigger13a|DNA|TcMar-Tigger	-18803	NR_031604	100302113		NR_031604	ENSG00000221325	MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA
154366	chr22	33555851	33556150	+	0	NA	intron (NM_133642, intron 6 of 14)	intron (NM_133642, intron 6 of 14)	16262	NM_001378631	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
5979	chr1	26935351	26936280	+	0	NA	intron (NM_006600, intron 2 of 8)	intron (NM_006600, intron 2 of 8)	14072	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
220123	chr8	94719371	94720400	+	0	NA	promoter-TSS (NM_181787)	promoter-TSS (NM_181787)	-15	NM_181787	286148		NM_181787	ENSG00000156162	DPY19L4	-	dpy-19 like 4	protein-coding
98013	chr17	45371401	45372080	+	0	NA	Intergenic	CpG	38646	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
74312	chr15	58330551	58331050	+	0	NA	Intergenic	Intergenic	-101191	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
171459	chr3	196338401	196338950	+	0	NA	promoter-TSS (NM_001204898)	promoter-TSS (NM_001204898)	-255	NR_037950	100534611		NR_037950		TM4SF19-DYNLT2B	TM4SF19-TCTEX1D2	TM4SF19-DYNLT2B readthrough (NMD candidate)	ncRNA
72191	chr15	30084451	30084950	+	0	NA	intron (NM_001282472, intron 1 of 18)	intron (NM_001282472, intron 1 of 18)	1745	NM_001282472	653073		NM_001282472	ENSG00000179938	GOLGA8J	-	golgin A8 family member J	protein-coding
22569	chr1	222665071	222665230	+	0	NA	intron (NM_001324062, intron 28 of 28)	AluJb|SINE|Alu	20847	NM_001300867	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
139105	chr2	218906651	218907030	+	0	NA	non-coding (NR_110238, exon 4 of 5)	non-coding (NR_110238, exon 4 of 5)	23797	NR_110238	101928537		NR_110238	ENSG00000228135	LINC01494	-	long intergenic non-protein coding RNA 1494	ncRNA
115689	chr19	16195971	16196330	+	0	NA	Intergenic	PABL_A|LTR|ERV1	-1761	NM_032493	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
74588	chr15	60560351	60560950	+	0	NA	intron (NM_134260, intron 1 of 11)	AluJb|SINE|Alu	31876	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
58779	chr12	132727501	132727700	+	0	NA	intron (NM_015114, intron 12 of 12)	CpG	16758	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
199854	chr6	127777821	127778080	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	77238	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
146394	chr20	49293721	49294430	+	0	NA	Intergenic	MER11C|LTR|ERVK	13392	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
126732	chr2	30193221	30194100	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	6226	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
214288	chr7	149068101	149068500	+	0	NA	Intergenic	AluSx|SINE|Alu	22418	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
96975	chr17	42256171	42257150	+	0	NA	intron (NM_012448, intron 1 of 18)	AluY|SINE|Alu	19731	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
172141	chr4	1195751	1195850	+	0	NA	TTS (NR_024569)	TTS (NR_024569)	13162	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
1280	chr1	2322351	2323250	+	0	NA	intron (NM_024848, intron 13 of 13)	CpG	29861	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
95868	chr17	38849301	38849800	+	0	NA	3' UTR (NM_000978, exon 5 of 5)	3' UTR (NM_000978, exon 5 of 5)	2108	NR_145761	109617002		NR_145761	ENSG00000252699	SNORA21B	-	small nucleolar RNA, H/ACA box 21B	snoRNA
49733	chr12	31589821	31590150	+	0	NA	promoter-TSS (NR_046909)	promoter-TSS (NR_046909)	62	NR_046909	100874249		NR_046909	ENSG00000255867	DENND5B-AS1	-	DENND5B antisense RNA 1	ncRNA
36205	chr11	3443971	3444330	+	0	NA	Intergenic	Intergenic	32923	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
140739	chr2	234462971	234463130	+	0	NA	Intergenic	L2c|LINE|L2	-8455	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
70449	chr14	102051551	102051650	+	0	NA	3' UTR (NM_001376, exon 78 of 78)	3' UTR (NM_001376, exon 78 of 78)	35444	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
155797	chr22	39299701	39300730	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	13696	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
115717	chr19	16234871	16235230	+	0	NA	3' UTR (NM_032493, exon 12 of 12)	3' UTR (NM_032493, exon 12 of 12)	37139	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
145467	chr20	43733051	43733550	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-6298	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
4613	chr1	22097701	22098100	+	0	NA	3' UTR (NM_001039802, exon 7 of 7)	3' UTR (NM_001039802, exon 7 of 7)	45191	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
91169	chr17	3794701	3795900	+	0	NA	intron (NM_002208, intron 1 of 30)	intron (NM_002208, intron 1 of 30)	5888	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
95161	chr17	35138221	35139080	+	0	NA	intron (NM_001014445, intron 3 of 11)	AluSz|SINE|Alu	3601	NM_001014445	54475		NM_018096	ENSG00000073536	NLE1	NLE|Rsa4	notchless homolog 1	protein-coding
52912	chr12	57231951	57232050	+	0	NA	intron (NR_048562, intron 3 of 10)	intron (NR_048562, intron 3 of 10)	1634	NR_048562	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
198676	chr6	107954001	107954400	+	0	NA	intron (NM_007214, intron 1 of 20)	SVA_D|Retroposon|SVA	4008	NM_007214	11231		NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L	SEC63 homolog, protein translocation regulator	protein-coding
194158	chr6	32047021	32047280	+	0	NA	intron (NM_019105, intron 30 of 43).4	intron (NM_019105, intron 30 of 43).4	-1022	NM_032470	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
103040	chr17	77124221	77124480	+	0	NA	intron (NM_001204410, intron 3 of 18)	AluJb|SINE|Alu	-16619	NM_001143999	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
228277	chr9	98072271	98072430	+	0	NA	intron (NM_018946, intron 2 of 5)	intron (NM_018946, intron 2 of 5)	15618	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
213541	chr7	139094251	139096080	+	0	NA	intron (NM_020119, intron 1 of 12)	intron (NM_020119, intron 1 of 12)	14555	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
136948	chr2	190340421	190340680	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-3039	NM_002194	3628		NM_002194	ENSG00000151689	INPP1	-	inositol polyphosphate-1-phosphatase	protein-coding
71266	chr14	105215801	105216200	+	0	NA	intron (NM_145685, intron 11 of 13)	(CA)n|Simple_repeat|Simple_repeat	31885	NM_145685	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
13684	chr1	116646751	116647050	+	0	NA	intron (NM_001007237, intron 2 of 10)	intron (NM_001007237, intron 2 of 10)	20833	NM_001007237	3321		NM_001542	ENSG00000143061	IGSF3	EWI-3|LCDD|V8	immunoglobulin superfamily member 3	protein-coding
142869	chr20	17677721	17678080	+	0	NA	intron (NM_004587, intron 1 of 24)	intron (NM_004587, intron 1 of 24)	4342	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
154730	chr22	36462221	36462680	+	0	NA	Intergenic	Intergenic	19190	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
62920	chr13	111151671	111152030	+	0	NA	non-coding (NR_120398, exon 1 of 2)	non-coding (NR_120398, exon 1 of 2)	1727	NR_120398	101060553		NR_120398		LOC101060553	-	uncharacterized LOC101060553	ncRNA
176551	chr4	98470851	98471150	+	0	NA	3' UTR (NM_005723, exon 8 of 8)	3' UTR (NM_005723, exon 8 of 8)	187611	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
47438	chr12	3454371	3454730	+	0	NA	intron (NM_001256536, intron 1 of 9)	intron (NM_001256536, intron 1 of 9)	-36653	NM_019854	56341		NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
196328	chr6	43156901	43157300	+	0	NA	intron (NR_072998, intron 16 of 18)	L1ME3B|LINE|L1	-14169	NM_003131	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
163947	chr3	52845701	52846000	+	0	NA	TTS (NR_107031)	TTS (NR_107031)	702	NR_107031	102465866		NR_107031	ENSG00000275789	MIR8064	hsa-mir-8064	microRNA 8064	ncRNA
83763	chr16	28713351	28713950	+	0	NA	intron (NM_001286478, intron 2 of 20)	intron (NM_001286478, intron 2 of 20)	2186	NM_003752	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
220770	chr8	102410621	102411600	+	0	NA	intron (NM_001282873, intron 1 of 58)	intron (NM_001282873, intron 1 of 58)	-1229	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
187184	chr5	140649871	140650030	+	0	NA	intron (NM_006083, intron 2 of 19)	L1ME3G|LINE|L1	2106	NR_037428	100500820		NR_037428	ENSG00000284325	MIR3655	-	microRNA 3655	ncRNA
91367	chr17	4541001	4541650	+	0	NA	intron (NM_014520, intron 24 of 25)	intron (NM_014520, intron 24 of 25)	14059	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
103454	chr17	78312221	78312700	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-33968	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
153250	chr22	24060371	24061400	+	0	NA	intron (NM_012295, intron 12 of 36)	AluYc|SINE|Alu	49515	NM_001199281	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
143251	chr20	25057901	25058760	+	0	NA	promoter-TSS (NM_032501)	promoter-TSS (NM_032501)	-148	NM_001252675	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
216468	chr8	19696251	19697100	+	0	NA	intron (NM_001354476, intron 1 of 8)	MIR|SINE|MIR	-13914	NR_024040	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
33176	chr10	113007121	113007980	+	0	NA	intron (NM_001363501, intron 4 of 13)	intron (NM_001363501, intron 4 of 13)	-37805	NR_132769	106635520		NR_132769		SNORA87	-	small nucleolar RNA, H/ACA box 87	snoRNA
73909	chr15	50758651	50758950	+	0	NA	intron (NM_032802, intron 1 of 14)	intron (NM_032802, intron 1 of 14)	6906	NM_032802	84888		NM_032802	ENSG00000138600	SPPL2A	IMD86|IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
3729	chr1	16628601	16629430	+	0	NA	intron (NR_026752, intron 1 of 6)	intron (NR_026752, intron 1 of 6)	1891	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
11627	chr1	91736251	91736550	+	0	NA	intron (NR_036634, intron 5 of 17)	intron (NR_036634, intron 5 of 17)	149751	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
195553	chr6	37482701	37482900	+	0	NA	TTS (NM_138493)	TTS (NM_138493)	17093	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
89320	chr16	88731671	88732680	+	0	NA	intron (NM_001142864, intron 21 of 50)	intron (NM_001142864, intron 21 of 50)	995	NR_103774	100289580		NM_207451		HSALR1	-	HSP90AB1 associated lncRNA 1	ncRNA
77927	chr15	89318571	89318930	+	0	NA	intron (NM_002693, intron 20 of 22)	intron (NM_002693, intron 20 of 22)	8060	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
106236	chr18	11946951	11947930	+	0	NA	Intergenic	Intergenic	-34067	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
144731	chr20	36579751	36580050	+	0	NA	intron (NM_001199535, intron 2 of 4)	intron (NM_001199535, intron 2 of 4)	5346	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
24217	chr1	236136651	236137080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5674	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
150422	chr21	42409271	42409800	+	0	NA	exon (NM_018961, exon 3 of 15)	exon (NM_018961, exon 3 of 15)	5633	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
228026	chr9	95881871	95882230	+	0	NA	intron (NM_001375291, intron 2 of 18)	MLT1F2|LTR|ERVL-MaLR	-6073	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
46800	chr11	130224371	130224530	+	0	NA	Intergenic	AluSc8|SINE|Alu	64668	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
31597	chr10	97359601	97359800	+	0	NA	intron (NM_015179, intron 31 of 33)	MIRc|SINE|MIR	-24971	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
105103	chr17	82187671	82187830	+	0	NA	intron (NM_001316321, intron 8 of 14)	intron (NM_001316321, intron 8 of 14)	25092	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
12130	chr1	100064751	100065550	+	0	NA	intron (NM_033055, intron 5 of 11)	AluJb|SINE|Alu	27055	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
9543	chr1	51514271	51515080	+	0	NA	intron (NM_001981, intron 1 of 24)	intron (NM_001981, intron 1 of 24)	4591	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
148313	chr20	63740101	63741700	+	0	NA	intron (NM_020062, intron 2 of 7)	intron (NM_020062, intron 2 of 7)	1124	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
108188	chr18	63096521	63096930	+	0	NA	Intergenic	L1ME4b|LINE|L1	223044	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
91678	chr17	5581101	5581680	+	0	NA	intron (NM_014922, intron 3 of 15)	MIR|SINE|MIR	3119	NM_001033053	22861		NM_014922	ENSG00000091592	NLRP1	AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|JRRP|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
28004	chr10	43146271	43146950	+	0	NA	intron (NR_135077, intron 1 of 8)	AluJo|SINE|Alu	8165	NM_018590	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
52657	chr12	56302151	56303430	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2460	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
46461	chr11	128284851	128284950	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	76134	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
180315	chr5	5523151	5524130	+	0	NA	Intergenic	MER41C|LTR|ERV1	100963	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
155542	chr22	38712151	38712650	+	0	NA	intron (NM_004286, intron 2 of 11)	L2c|LINE|L2	6456	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
224448	chr9	15421901	15423690	+	0	NA	promoter-TSS (NR_161434)	promoter-TSS (NR_161434)	11	NM_001039697	6619		NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
141383	chr2	240733771	240734450	+	0	NA	intron (NM_001379639, intron 36 of 47)	intron (NM_001379639, intron 36 of 47)	42244	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
68316	chr14	77407101	77407500	+	0	NA	intron (NM_001113475, intron 3 of 5)	intron (NM_001113475, intron 3 of 5)	15756	NM_001113475	122945		NM_138791	ENSG00000165555	NOXRED1	C14orf148	NADP dependent oxidoreductase domain containing 1	protein-coding
29540	chr10	71106251	71106350	+	0	NA	Intergenic	THE1A|LTR|ERVL-MaLR	-106270	NM_170744	219699		NM_170744	ENSG00000107731	UNC5B	UNC5H2|p53RDL1	unc-5 netrin receptor B	protein-coding
58259	chr12	128814851	128815150	+	0	NA	exon (NM_145648, exon 2 of 8)	exon (NM_145648, exon 2 of 8)	8958	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
230920	chr9	129328451	129328950	+	0	NA	Intergenic	Intergenic	7684	NR_149714	414318		NR_149714		LINC02913	C9orf106	long intergenic non-protein coding RNA 2913	ncRNA
101118	chr17	65022851	65023700	+	0	NA	intron (NM_001282425, intron 2 of 3)	Cheshire|DNA|hAT-Charlie	32499	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
164021	chr3	53222121	53222450	+	0	NA	Intergenic	Intergenic	33737	NM_001064	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
173622	chr4	11487101	11487350	+	0	NA	Intergenic	MIRb|SINE|MIR	-58331	NM_005114	9957		NM_005114	ENSG00000002587	HS3ST1	3OST|3OST1	heparan sulfate-glucosamine 3-sulfotransferase 1	protein-coding
61045	chr13	48239101	48239550	+	0	NA	intron (NM_021999, intron 1 of 5)	intron (NM_021999, intron 1 of 5)	6119	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
6795	chr1	30801371	30802230	+	0	NA	Intergenic	MIR3|SINE|MIR	-22852	NR_146732	105378622		NR_146732	ENSG00000223382	LINC01778	-	long intergenic non-protein coding RNA 1778	ncRNA
182013	chr5	55338051	55339100	+	0	NA	intron (NM_015360, intron 5 of 26)	L1ME1|LINE|L1	30586	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
185742	chr5	132101971	132102800	+	0	NA	Intergenic	Intergenic	28596	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
148019	chr20	63106301	63106680	+	0	NA	Intergenic	Intergenic	-4171	NR_003245	768097		NR_003245	ENSG00000231133	HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B	ncRNA
214693	chr7	150980151	150981000	+	0	NA	Intergenic	Intergenic	-2254	NM_000238	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
43035	chr11	74014971	74015330	+	0	NA	intron (NM_001286577, intron 32 of 32)	intron (NM_001286577, intron 32 of 32)	-5913	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
38440	chr11	45181971	45182330	+	0	NA	intron (NM_001256695, intron 2 of 7)	intron (NM_001256695, intron 2 of 7)	1114	NM_001384651	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
144959	chr20	37180971	37181630	+	0	NA	intron (NM_001324299, intron 1 of 16)	L2a|LINE|L2	-1752	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
177843	chr4	127893351	127893450	+	0	NA	exon (NM_014264, exon 11 of 16)	exon (NM_014264, exon 11 of 16)	12156	NM_001190801	10733		NM_014264	ENSG00000142731	PLK4	MCCRP2|SAK|STK18	polo like kinase 4	protein-coding
135863	chr2	170932951	170933250	+	0	NA	intron (NM_015530, intron 1 of 9)	intron (NM_015530, intron 1 of 9)	3847	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
198649	chr6	107812651	107813350	+	0	NA	intron (NM_198081, intron 1 of 7)	MER113|DNA|hAT-Charlie	11313	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
19216	chr1	172530271	172530630	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-1899	NM_016227	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
26110	chr10	13351451	13352330	+	0	NA	Intergenic	Intergenic	-3592	NM_001195602	22929		NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
2785	chr1	10891071	10891430	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	75437	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
121871	chr19	48318451	48318750	+	0	NA	intron (NM_144577, intron 2 of 13)	intron (NM_144577, intron 2 of 13)	899	NM_144577	93233		NM_144577	ENSG00000105479	ODAD1	CCDC114|CILD20	outer dynein arm docking complex subunit 1	protein-coding
54246	chr12	82686401	82687300	+	0	NA	promoter-TSS (NM_001320321)	promoter-TSS (NM_001320321)	-56	NM_152588	160335		NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane O-mannosyltransferase targeting cadherins 2	protein-coding
216837	chr8	22592201	22592930	+	0	NA	intron (NM_176871, intron 8 of 9)	MIRc|SINE|MIR	-7034	NM_001013842	541565		NM_173686	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
70813	chr14	103550521	103550780	+	0	NA	Intergenic	Intergenic	11670	NM_001015049	9529		NM_004873	ENSG00000166170	BAG5	BAG-5|CMD2F	BAG cochaperone 5	protein-coding
193572	chr6	30670621	30671400	+	0	NA	intron (NM_001164239, intron 2 of 19).6	intron (NM_001164239, intron 2 of 19).6	1996	NM_003587	8449		NM_003587	ENSG00000204560	DHX16	DBP2|DDX16|NMOAS|PRO2014|PRP8|PRPF2|Prp2	DEAH-box helicase 16	protein-coding
51271	chr12	51168321	51168780	+	0	NA	intron (NM_001173453, intron 1 of 13)	AluJo|SINE|Alu	4585	NM_005653	7024		NM_005653	ENSG00000135457	TFCP2	LBP1C|LSF|LSF1D|SEF|TFCP2C	transcription factor CP2	protein-coding
55279	chr12	102958221	102958680	+	0	NA	promoter-TSS (NM_001354304)	promoter-TSS (NM_001354304)	-9	NM_001354304	5053		NM_000277	ENSG00000171759	PAH	PH|PKU|PKU1	phenylalanine hydroxylase	protein-coding
144609	chr20	35825821	35826280	+	0	NA	intron (NM_016436, intron 2 of 17)	intron (NM_016436, intron 2 of 17)	54035	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
182319	chr5	59007501	59007730	+	0	NA	intron (NM_001364603, intron 7 of 15)	intron (NM_001364603, intron 7 of 15)	-7717	NM_001197223	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
71480	chr14	105950651	105950750	+	0	NA	Intergenic	L1MA8|LINE|L1	21569	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
202463	chr6	158208871	158209100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	40635	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
42559	chr11	71813351	71814130	+	0	NA	TTS (NM_001278713)	TTS (NM_001278713)	119	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
141089	chr2	238357301	238357850	+	0	NA	intron (NM_001139490, intron 13 of 14)	intron (NM_001139490, intron 13 of 14)	37031	NM_001139490	26146		NM_015650	ENSG00000204104	TRAF3IP1	CFAP116|FAP116|IFT54|MIP-T3|MIPT3|SLSN9	TRAF3 interacting protein 1	protein-coding
168740	chr3	151085221	151085800	+	0	NA	Intergenic	CpG	-1288	NM_053002	116931		NM_053002	ENSG00000144893	MED12L	NIZIDS|NOPAR|TNRC11L|TRALP|TRALPUSH	mediator complex subunit 12L	protein-coding
281	chr1	936621	937480	+	0	NA	intron (NM_001385641, intron 5 of 13)	intron (NM_001385641, intron 5 of 13)	11319	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
208599	chr7	72947901	72948100	+	0	NA	TTS (NR_033323)	TTS (NR_033323)	6763	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
123397	chr19	53927751	53928150	+	0	NA	intron (NM_001384801, intron 4 of 4)	intron (NM_001384801, intron 4 of 4)	18672	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
138597	chr2	208124151	208124450	+	0	NA	exon (NM_006891, exon 2 of 3)	exon (NM_006891, exon 2 of 3)	224	NM_006891	1421		NM_006891	ENSG00000118231	CRYGD	CACA|CCA3|CCP|CRYG4|CTRCT4|PCC|cry-g-D	crystallin gamma D	protein-coding
193465	chr6	30515601	30517130	+	0	NA	promoter-TSS (NR_149088)	promoter-TSS (NR_149088)	99	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
151209	chr21	45153321	45153950	+	0	NA	intron (NM_001346687, intron 1 of 11)	intron (NM_001346687, intron 1 of 11)	1105	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
147535	chr20	59402521	59402930	+	0	NA	Intergenic	Intergenic	102114	NM_001302456	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
60452	chr13	41017151	41018030	+	0	NA	intron (NM_001370332, intron 1 of 10)	intron (NM_001370332, intron 1 of 10)	1726	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
48137	chr12	7906321	7906580	+	0	NA	Intergenic	LTR102_Mam|LTR|ERVL	-15254	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
138411	chr2	205025071	205025230	+	0	NA	intron (NM_205863, intron 3 of 21)	intron (NM_205863, intron 3 of 21)	479675	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
50121	chr12	45170571	45170730	+	0	NA	Intergenic	Intergenic	45356	NR_037144	51054		NM_015899	ENSG00000293316	PLEKHA8P1	FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2	pleckstrin homology domain containing A8 pseudogene 1	pseudo
191747	chr6	13810701	13810900	+	0	NA	intron (NM_001031713, intron 1 of 8)	intron (NM_001031713, intron 1 of 8)	3760	NM_001031713	63933		NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
214794	chr7	151166871	151167770	+	0	NA	exon (NM_001098834, exon 1 of 2)	exon (NM_001098834, exon 1 of 2)	228	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
60234	chr13	40561801	40562000	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSq|SINE|Alu	-80894	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
213325	chr7	135208421	135208800	+	0	NA	intron (NR_156130, intron 3 of 13)	intron (NR_156130, intron 3 of 13)	-1532	NR_106764	102465254		NR_106764	ENSG00000277138	MIR6509	hsa-mir-6509	microRNA 6509	ncRNA
22820	chr1	224922601	224922800	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-6954	NM_144989	127602		NM_001373	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein axonemal heavy chain 14	protein-coding
174145	chr4	36237651	36238480	+	0	NA	intron (NR_146894, intron 1 of 32)	intron (NR_146894, intron 1 of 32)	5874	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
94509	chr17	29392951	29393050	+	0	NA	intron (NM_025142, intron 1 of 17)	intron (NM_025142, intron 1 of 17)	2075	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
184530	chr5	102283401	102283800	+	0	NA	intron (NM_180991, intron 2 of 12)	(A)n|Simple_repeat|Simple_repeat	12684	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
77674	chr15	85595571	85596230	+	0	NA	intron (NM_007200, intron 8 of 36)	intron (NM_007200, intron 8 of 36)	-24050	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
216496	chr8	20235871	20236230	+	0	NA	Intergenic	Intergenic	37485	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
50828	chr12	49102301	49102500	+	0	NA	intron (NM_001352161, intron 9 of 16)	intron (NM_001352161, intron 9 of 16)	-7599	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
85921	chr16	57091251	57091630	+	0	NA	Intergenic	Intergenic	-1143	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
81929	chr16	11781801	11782000	+	0	NA	intron (NM_014153, intron 2 of 22)	intron (NM_014153, intron 2 of 22)	15358	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
11974	chr1	94293051	94293150	+	0	NA	Intergenic	L1PA6|LINE|L1	-45354	NM_001328665	9411		NM_004815	ENSG00000137962	ARHGAP29	PARG1	Rho GTPase activating protein 29	protein-coding
166662	chr3	120073001	120073480	+	0	NA	intron (NM_001146156, intron 1 of 10)	AluJo|SINE|Alu	11408	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
131481	chr2	96502771	96502930	+	0	NA	intron (NR_104346, intron 1 of 3)	intron (NR_104346, intron 1 of 3)	2507	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
57185	chr12	121443051	121444150	+	0	NA	TTS (NR_106957)	TTS (NR_106957)	752	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
225812	chr9	37679051	37679150	+	0	NA	intron (NM_001371223, intron 1 of 15)	intron (NM_001371223, intron 1 of 15)	11091	NM_001371223	22844		NM_014907	ENSG00000070601	FRMPD1	FRMD2	FERM and PDZ domain containing 1	protein-coding
77715	chr15	85694971	85695980	+	0	NA	intron (NM_007200, intron 17 of 36)	Chap1_Mam|DNA|hAT-Charlie	63250	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
195085	chr6	35581571	35582130	+	0	NA	3' UTR (NM_001145777, exon 7 of 7)	3' UTR (NM_001145777, exon 7 of 7)	-68954	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
67665	chr14	73116701	73116900	+	0	NA	intron (NM_021239, intron 18 of 18)	intron (NM_021239, intron 18 of 18)	-19707	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
185546	chr5	131359351	131360050	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	95647	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
136967	chr2	190415671	190416730	+	0	NA	intron (NM_017694, intron 2 of 7)	intron (NM_017694, intron 2 of 7)	7342	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
126084	chr2	25816101	25816830	+	0	NA	intron (NM_018263, intron 2 of 11)	MLT1H2|LTR|ERVL-MaLR	14436	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
78299	chr15	90905901	90906300	+	0	NA	intron (NR_135503, intron 5 of 22)	intron (NR_135503, intron 5 of 22)	1910	NR_135504	4122		NM_006122	ENSG00000196547	MAN2A2	MANA2X|alpha-MIIx	mannosidase alpha class 2A member 2	protein-coding
194483	chr6	33243401	33244350	+	0	NA	Intergenic	AluSz|SINE|Alu	-5661	NR_044997	414765		NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25	ncRNA
10751	chr1	76294501	76295450	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	220229	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
206969	chr7	38306371	38306530	+	0	NA	Intergenic	AluSz|SINE|Alu	-32803	NM_001003806	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
140528	chr2	233237671	233238230	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-13621	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
117871	chr19	32580551	32582050	+	0	NA	exon (NM_004708, exon 1 of 6)	exon (NM_004708, exon 1 of 6)	110	NM_004708	9141		NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
12844	chr1	110065171	110065550	+	0	NA	intron (NM_006492, intron 1 of 3)	intron (NM_006492, intron 1 of 3)	5312	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
56016	chr12	110354901	110355400	+	0	NA	Intergenic	L1MC3|LINE|L1	46799	NM_001385210	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
137823	chr2	200426771	200426930	+	0	NA	intron (NM_001100424, intron 6 of 11)	intron (NM_001100424, intron 6 of 11)	83218	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
72697	chr15	38576501	38577630	+	0	NA	Intergenic	Intergenic	-12251	NM_005739	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
215933	chr8	8310601	8310800	+	0	NA	Intergenic	Intergenic	75544	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
87030	chr16	68272621	68273280	+	0	NA	intron (NM_003983, intron 2 of 10)	intron (NM_003983, intron 2 of 10)	8424	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
98196	chr17	46121751	46123350	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	70232	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
150657	chr21	43422521	43422880	+	0	NA	intron (NM_173354, intron 3 of 13)	intron (NM_173354, intron 3 of 13)	4431	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
193776	chr6	31364721	31364980	+	0	NA	Intergenic	AluJb|SINE|Alu	-7671	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
20418	chr1	198202171	198203000	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	45587	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
82233	chr16	15033421	15033800	+	0	NA	intron (NM_001324019, intron 19 of 22)	L2c|LINE|L2	22464	NM_173474	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
67690	chr14	73237121	73237450	+	0	NA	promoter-TSS (NM_001365906)	promoter-TSS (NM_001365906)	-221	NR_158678	89932		NM_173462	ENSG00000100767	PAPLN	PPN	papilin, proteoglycan like sulfated glycoprotein	protein-coding
145448	chr20	43537851	43538530	+	0	NA	intron (NR_165195, intron 15 of 16)	intron (NR_165195, intron 15 of 16)	-20837	NM_170693	10110		NM_016276	ENSG00000101049	SGK2	H-SGK2|dJ138B7.2	serum/glucocorticoid regulated kinase 2	protein-coding
95378	chr17	35882371	35882730	+	0	NA	Intergenic	MIRc|SINE|MIR	-2190	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
173457	chr4	8414071	8414680	+	0	NA	exon (NM_003501, exon 5 of 18)	exon (NM_003501, exon 5 of 18)	14073	NM_001375787	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
180426	chr5	10432371	10432800	+	0	NA	intron (NM_001270660, intron 24 of 24)	intron (NM_001270660, intron 24 of 24)	9266	NR_102746	100505845		NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
229962	chr9	126705071	126705700	+	0	NA	Intergenic	Intergenic	91457	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
123073	chr19	51379001	51379350	+	0	NA	TTS (NM_030657)	TTS (NM_030657)	-6521	NM_005601	4818		NM_005601	ENSG00000105374	NKG7	GIG1|GMP-17|p15-TIA-1	natural killer cell granule protein 7	protein-coding
7927	chr1	37494371	37494730	+	0	NA	intron (NR_073091, intron 7 of 7)	AluJb|SINE|Alu	6444	NR_049844	100847010		NR_049844	ENSG00000263675	MIR5581	-	microRNA 5581	ncRNA
208320	chr7	66127201	66127400	+	0	NA	intron (NM_001040648, intron 1 of 2)	intron (NM_001040648, intron 1 of 2)	12453	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
52410	chr12	55751671	55751830	+	0	NA	TTS (NR_026722)	TTS (NR_026722)	8628	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
24709	chr1	247336701	247336900	+	0	NA	intron (NR_168399, intron 1 of 2)	intron (NR_168399, intron 1 of 2)	4746	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
44686	chr11	111299471	111299630	+	0	NA	promoter-TSS (NR_169243)	promoter-TSS (NR_169243)	167	NR_169242	399948		NM_207429	ENSG00000196167	COLCA1	C11orf92|CASC12|LOH11CR1F	colorectal cancer associated 1	ncRNA
150907	chr21	44172821	44173300	+	0	NA	Intergenic	Intergenic	-13198	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
81205	chr16	4495201	4495800	+	0	NA	promoter-TSS (NM_001127205).2	promoter-TSS (NM_001127205).2	-319	NM_001286270	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
142656	chr20	5834801	5835000	+	0	NA	intron (NM_001303478, intron 3 of 3)	MLT1A0|LTR|ERVL-MaLR	-76610	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
231040	chr9	129616051	129616350	+	0	NA	intron (NM_199350, intron 3 of 6)	MIRb|SINE|MIR	-4013	NM_001286797	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
109528	chr19	854021	854600	+	0	NA	intron (NM_001972, intron 3 of 4)	AluSx3|SINE|Alu	2007	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
139282	chr2	219498001	219500130	+	0	NA	TTS (NM_001286811)	TTS (NM_001286811)	174	NM_205847	29926		NM_013335	ENSG00000144591	GMPPA	AAMR	GDP-mannose pyrophosphorylase A	protein-coding
95667	chr17	38294901	38295100	+	0	NA	Intergenic	AluY|SINE|Alu	-2023	NM_001278279	84311		NM_032351	ENSG00000278845	MRPL45	L45mt|MRP-L45|Mba1|mL45	mitochondrial ribosomal protein L45	protein-coding
28192	chr10	44724821	44725080	+	0	NA	Intergenic	Intergenic	-186366	NM_001345926	643236		NM_001123376	ENSG00000187783	TMEM72	C10orf127|KSP37	transmembrane protein 72	protein-coding
106062	chr18	9103591	9104930	+	0	NA	intron (NM_021074, intron 1 of 7)	L2b|LINE|L2	1561	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
116250	chr19	17603601	17604650	+	0	NA	3' UTR (NM_001080421, exon 42 of 42)	3' UTR (NM_001080421, exon 42 of 42)	48476	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
139913	chr2	230737901	230738100	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	24452	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
22075	chr1	211352021	211352500	+	0	NA	intron (NM_145759, intron 1 of 10)	THE1B|LTR|ERVL-MaLR	5896	NM_145759	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
142906	chr20	17973271	17974100	+	0	NA	intron (NM_001310338, intron 3 of 5)	intron (NM_001310338, intron 3 of 5)	4667	NM_001310339	92667		NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
226287	chr9	68322151	68322850	+	0	NA	Intergenic	Intergenic	19633	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
196686	chr6	44788371	44788530	+	0	NA	Intergenic	Intergenic	-236569	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
160296	chr3	27370951	27371250	+	0	NA	Intergenic	Intergenic	-1640	NM_152534	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
15327	chr1	149891121	149891850	+	0	NA	Intergenic	MIRc|SINE|MIR	-3520	NM_175065	317772		NM_175065	ENSG00000184270	H2AC21	H2AB|HIST2H2AB	H2A clustered histone 21	protein-coding
225731	chr9	37027451	37028330	+	0	NA	intron (NR_103999, intron 1 of 8)	CpG	6378	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
73672	chr15	44733521	44734080	+	0	NA	TTS (NR_125376)	TTS (NR_125376)	-2728	NM_001301144	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
37018	chr11	12086021	12086630	+	0	NA	Intergenic	Intergenic	-24251	NM_001282668	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
4737	chr1	23403621	23404430	+	0	NA	intron (NM_003196, intron 5 of 10).2	MamRTE1|LINE|RTE-BovB	20723	NM_003196	6920		NM_003196	ENSG00000204219	TCEA3	TFIIS|TFIIS.H	transcription elongation factor A3	protein-coding
134125	chr2	134142021	134142480	+	0	NA	intron (NM_001371457, intron 1 of 16)	L2c|LINE|L2	15125	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
209984	chr7	92832221	92833500	+	0	NA	intron (NM_001145306, intron 2 of 7)	intron (NM_001145306, intron 2 of 7)	1099	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
129069	chr2	65079301	65080100	+	0	NA	intron (NM_015147, intron 5 of 6)	intron (NM_015147, intron 5 of 6)	23284	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
125052	chr2	9615301	9616130	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	15282	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
151424	chr21	46119101	46119300	+	0	NA	intron (NM_001849, intron 14 of 27)	intron (NM_001849, intron 14 of 27)	21081	NM_058175	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
101220	chr17	65592821	65593280	+	0	NA	Intergenic	Intergenic	-31402	NM_004655	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
19524	chr1	176159951	176160750	+	0	NA	intron (NM_001286644, intron 3 of 17)	L1PA8A|LINE|L1	46894	NM_001001740	64326		NM_022457	ENSG00000143207	COP1	CFAP78|FAP78|RFWD2|RNF200	COP1 E3 ubiquitin ligase	protein-coding
124208	chr19	56638071	56638250	+	0	NA	intron (NR_163262, intron 3 of 5)	CpG	-4999	NM_001193628	147670		NM_001193628	ENSG00000268182	SMIM17	-	small integral membrane protein 17	protein-coding
115332	chr19	15124701	15126230	+	0	NA	intron (NM_006844, intron 1 of 15)	CpG	321	NM_006844	10994		NM_006844	ENSG00000105135	ILVBL	209L8|AHAS|HACL1L|HACL2|ILV2H	ilvB acetolactate synthase like	protein-coding
89579	chr16	89266701	89267450	+	0	NA	TTS (NM_001256183)	TTS (NM_001256183)	-29053	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
79006	chr16	18871	19030	+	0	NA	Intergenic	Intergenic	-1831	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
45916	chr11	120802251	120802650	+	0	NA	intron (NM_001282473, intron 3 of 17)	intron (NM_001282473, intron 3 of 17)	16665	NR_133008	105369532		NR_133008		LOC105369532	-	uncharacterized LOC105369532	ncRNA
170190	chr3	183824471	183824990	+	0	NA	intron (NM_024871, intron 1 of 2)	CpG	847	NM_024871	79929		NM_024871	ENSG00000180834	MAP6D1	MAPO6D1|SL21	MAP6 domain containing 1	protein-coding
160268	chr3	25664401	25666480	+	0	NA	promoter-TSS (NR_039644)	promoter-TSS (NR_039644)	-501	NR_039644	100616477		NR_039644	ENSG00000283971	MIR4442	mir-4442	microRNA 4442	ncRNA
99740	chr17	50926371	50927200	+	0	NA	Intergenic	MIRb|SINE|MIR	-58807	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
129363	chr2	68779701	68780280	+	0	NA	intron (NM_001364820, intron 2 of 9)	intron (NM_001364820, intron 2 of 9)	5080	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
47793	chr12	6572621	6573300	+	0	NA	intron (NM_001273, intron 38 of 39)	intron (NM_001273, intron 38 of 39)	-4669	NM_001258308	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
43258	chr11	75547651	75548280	+	0	NA	Intergenic	L2c|LINE|L2	-14288	NM_001207014	871		NM_001235	ENSG00000149257	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46	serpin family H member 1	protein-coding
144812	chr20	36745701	36746880	+	0	NA	promoter-TSS (NM_022477)	promoter-TSS (NM_022477)	-200	NM_032013	57446		NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
213416	chr7	137992701	137992900	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	9286	NM_194071	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
26047	chr10	12450821	12451080	+	0	NA	intron (NM_001351032, intron 3 of 11)	intron (NM_001351032, intron 3 of 11)	61968	NM_001351032	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
8859	chr1	43399551	43399650	+	0	NA	intron (NM_001365999, intron 1 of 71)	AluY|SINE|Alu	9701	NM_001365999	23334		NM_015284	ENSG00000198198	SZT2	C1orf84|DEE18|EIEE18|KIAA0467|KICS1|SZT2A|SZT2B	SZT2 subunit of KICSTOR complex	protein-coding
59863	chr13	30615601	30616400	+	0	NA	intron (NM_001370340, intron 1 of 4)	intron (NM_001370340, intron 1 of 4)	1587	NM_001370340	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
65106	chr14	41805651	41805750	+	0	NA	intron (NR_144388, intron 2 of 5)	L1PA3|LINE|L1	198844	NM_001330106	145581		NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
183864	chr5	87260771	87261300	+	0	NA	Intergenic	MIRc|SINE|MIR	-6848	NM_002890	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
13643	chr1	116506121	116506450	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-27459	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
68123	chr14	75512771	75512930	+	0	NA	Intergenic	AluSq2|SINE|Alu	-9619	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
112720	chr19	7197801	7198850	+	0	NA	intron (NM_001079817, intron 2 of 20)	CpG	96089	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
40401	chr11	64041851	64042350	+	0	NA	intron (NM_001384466, intron 1 of 2)	intron (NM_001384466, intron 1 of 2)	5418	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
11730	chr1	91888921	91889330	+	0	NA	intron (NM_001195684, intron 2 of 17)	AluSz|SINE|Alu	-2974	NM_003243	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
40895	chr11	65129701	65130930	+	0	NA	promoter-TSS (NR_106809)	promoter-TSS (NR_106809)	-337	NR_106809	102465449		NR_106809	ENSG00000284489	MIR6751	hsa-mir-6751	microRNA 6751	ncRNA
98358	chr17	46348471	46348630	+	0	NA	intron (NM_001039083, intron 3 of 3).5	MIR|SINE|MIR	13216	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
68788	chr14	91223951	91224300	+	0	NA	intron (NM_001358311, intron 13 of 13)	intron (NM_001358311, intron 13 of 13)	20579	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
225959	chr9	41110751	41112230	+	0	NA	intron (NR_147036, intron 2 of 6)	SATR1|Satellite|Satellite	-2560	NR_147037	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
161976	chr3	46301371	46301930	+	0	NA	Intergenic	L2|LINE|L2	-52094	NM_001123041	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
239312	chrY	17405121	17405200	+	0	NA	Intergenic	LTR13|LTR|ERVK	-95798	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
104621	chr17	81429101	81430680	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	21298	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
133642	chr2	127043901	127044400	+	0	NA	Intergenic	(CACTCA)n|Simple_repeat|Simple_repeat	37915	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
40860	chr11	65083271	65084850	+	0	NA	promoter-TSS (NM_006782)	promoter-TSS (NM_006782)	-20	NM_080668	113130		NM_080668	ENSG00000146670	CDCA5	SORORIN	cell division cycle associated 5	protein-coding
18933	chr1	168473301	168473500	+	0	NA	intron (NR_125956, intron 4 of 4)	MSTA|LTR|ERVL-MaLR	22244	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
178895	chr4	157992151	157992330	+	0	NA	Intergenic	Intergenic	-178512	NR_147408	285505		NR_147407	ENSG00000248429	GASK1B-AS1	FAM198B-AS1	GASK1B antisense RNA 1	ncRNA
73225	chr15	41656271	41656430	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-4062	NM_001164273	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
155746	chr22	39173701	39176030	+	0	NA	Intergenic	Intergenic	-22185	NM_175709	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
208577	chr7	72874421	72874680	+	0	NA	Intergenic	Intergenic	-3044	NM_001382704	441251		NM_001034844		SPDYE7P	-	speedy/RINGO cell cycle regulator family member E7, pseudogene	pseudo
123379	chr19	53905871	53906130	+	0	NA	intron (NM_001316329, intron 16 of 18)	(TC)n|Simple_repeat|Simple_repeat	-3278	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
5773	chr1	26502451	26503150	+	0	NA	Intergenic	Intergenic	-26961	NM_002953	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
138579	chr2	207766901	207767400	+	0	NA	exon (NM_003468, exon 2 of 2)	exon (NM_003468, exon 2 of 2)	2756	NM_003468	7855		NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5|MCOPCB11	frizzled class receptor 5	protein-coding
225609	chr9	36187251	36187950	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-3256	NM_001184762	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
33415	chr10	118693901	118694100	+	0	NA	intron (NM_153810, intron 6 of 8)	AluY|SINE|Alu	60970	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
126317	chr2	27321301	27321500	+	0	NA	intron (NM_002437, intron 2 of 7)	intron (NM_002437, intron 2 of 7)	1697	NM_002437	4358		NM_002437	ENSG00000115204	MPV17	CMT2EE|MTDPS6|SYM1	mitochondrial inner membrane protein MPV17	protein-coding
165235	chr3	73016471	73016630	+	0	NA	TTS (NM_001318028)	TTS (NM_001318028)	19739	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
39694	chr11	61736471	61736630	+	0	NA	intron (NM_006133, intron 13 of 19)	L2c|LINE|L2	-16086	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
21138	chr1	203662401	203662630	+	0	NA	intron (NM_001365784, intron 1 of 20)	L1MB3|LINE|L1	34578	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
179186	chr4	173289171	173289330	+	0	NA	intron (NM_001375601, intron 2 of 8)	LTR25-int|LTR|ERV1	21090	NR_036093	100422849		NR_036093	ENSG00000221296	MIR548T	-	microRNA 548t	ncRNA
121399	chr19	46952571	46953330	+	0	NA	intron (NM_004491, intron 3 of 6)	AluJb|SINE|Alu	-66887	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
199030	chr6	111260721	111260980	+	0	NA	intron (NM_153369, intron 1 of 3)	intron (NM_153369, intron 1 of 3)	1511	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
33632	chr10	119658971	119659300	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	7755	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
60950	chr13	46549921	46550180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3120	NM_015116	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
168518	chr3	143951401	143951630	+	0	NA	Intergenic	Intergenic	-20283	NM_001363944	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
143087	chr20	22371901	22372100	+	0	NA	Intergenic	Intergenic	48643	NR_027089	284788		NR_027089	ENSG00000204684	LOC284788	-	uncharacterized LOC284788	ncRNA
117520	chr19	20168671	20169480	+	0	NA	intron (NM_052852, intron 1 of 3)	AluSx4|SINE|Alu	1861	NM_052852	90649		NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
36929	chr11	10824951	10825130	+	0	NA	Intergenic	Intergenic	15743	NR_120540	101928053		NR_120540	ENSG00000246308	LOC101928053	-	uncharacterized LOC101928053	ncRNA
207021	chr7	38374421	38374880	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	33073	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
150878	chr21	44128001	44128900	+	0	NA	intron (NM_005049, intron 19 of 20).2	intron (NM_005049, intron 19 of 20).2	-5233	NR_135220	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
191768	chr6	14115621	14116430	+	0	NA	Intergenic	Intergenic	-1231	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
15097	chr1	148530401	148530800	+	0	NA	TTS (NM_015383)	TTS (NM_015383)	-47298	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
163996	chr3	53159021	53159550	+	0	NA	Intergenic	MIRb|SINE|MIR	-1924	NM_006254	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
8389	chr1	40386971	40387130	+	0	NA	intron (NM_001198978, intron 1 of 9)	AluJb|SINE|Alu	-6295	NM_001198979	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
118045	chr19	34254151	34255750	+	0	NA	intron (NM_014686, intron 1 of 13)	CpG	396	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
126811	chr2	30458771	30459480	+	0	NA	intron (NM_001304446, intron 1 of 5)	intron (NM_001304446, intron 1 of 5)	11879	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
25839	chr10	11221901	11222450	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	57145	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
21831	chr1	207340351	207340650	+	0	NA	exon (NM_001114752, exon 10 of 11)	exon (NM_001114752, exon 10 of 11)	18822	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
75799	chr15	68843701	68844300	+	0	NA	Intergenic	Intergenic	-23105	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
22493	chr1	221734301	221734580	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	2460	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
71791	chr15	21715571	21716800	+	0	NA	Intergenic	LTR32|LTR|ERVL	2122	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
224838	chr9	27485171	27485330	+	0	NA	intron (NM_024761, intron 1 of 3)	MIR|SINE|MIR	-39040	NM_020124	56832		NM_020124	ENSG00000147896	IFNK	IFNT1|INFE1	interferon kappa	protein-coding
43941	chr11	93530121	93530380	+	0	NA	intron (NM_020179, intron 1 of 2)	intron (NM_020179, intron 1 of 2)	13141	NM_020179	56935		NM_020179	ENSG00000166002	SMCO4	C11orf75|FN5	single-pass membrane protein with coiled-coil domains 4	protein-coding
230627	chr9	128638201	128638980	+	0	NA	intron (NM_052844, intron 2 of 8)	intron (NM_052844, intron 2 of 8)	18260	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
100629	chr17	63609651	63610550	+	0	NA	Intergenic	Intergenic	9205	NM_016360	51204		NM_016360	ENSG00000136463	TACO1	CCDC44|MC4DN8	translational activator of cytochrome c oxidase I	protein-coding
126536	chr2	28565101	28565330	+	0	NA	intron (NM_153021, intron 18 of 57)	intron (NM_153021, intron 18 of 57)	-1142	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
161588	chr3	43017701	43018450	+	0	NA	intron (NM_001129908, intron 1 of 4)	intron (NM_001129908, intron 1 of 4)	38764	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
49105	chr12	14764001	14764200	+	0	NA	Intergenic	AluJb|SINE|Alu	7031	NM_175054	121504		NM_175054	ENSG00000197837	H4C16	H4-16|H4/p|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST4H4	H4 histone 16	protein-coding
92538	chr17	8944101	8944430	+	0	NA	intron (NM_001142633, intron 1 of 18)	L1PREC2|LINE|L1	21442	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
147427	chr20	58898571	58899080	+	0	NA	intron (NM_001077489, intron 2 of 11)	intron (NM_001077489, intron 2 of 11)	6662	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
64050	chr14	22537951	22538250	+	0	NA	Intergenic	MIR3|SINE|MIR	18962	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
203481	chr7	531371	532030	+	0	NA	Intergenic	Intergenic	11309	NR_033963	441307		NR_033963	ENSG00000223855	PDGFA-DT	HRAT92	PDGFA divergent transcript	ncRNA
112173	chr19	5657721	5658150	+	0	NA	intron (NM_001320571, intron 12 of 18)	intron (NM_001320571, intron 12 of 18)	22303	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
3923	chr1	17431171	17431830	+	0	NA	intron (NM_018715, intron 2 of 12).2	FLAM_C|SINE|Alu	7036	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
30290	chr10	75219601	75220000	+	0	NA	intron (NM_003375, intron 7 of 10)	AluSg|SINE|Alu	9646	NM_001184783	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
132121	chr2	101622901	101623430	+	0	NA	Intergenic	Intergenic	-74538	NM_145686	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
163640	chr3	52085851	52086730	+	0	NA	intron (NM_001161580, intron 9 of 9)	intron (NM_001161580, intron 9 of 9)	-21178	NR_027331	100128378		NM_001123039		LINC00696	C3orf74	long intergenic non-protein coding RNA 696	ncRNA
82315	chr16	15675201	15675750	+	0	NA	intron (NM_017668, intron 3 of 8)	AluJo|SINE|Alu	25230	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
38942	chr11	47511651	47511750	+	0	NA	intron (NM_001376409, intron 1 of 15)	MIR|SINE|MIR	12131	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
176928	chr4	102822751	102823600	+	0	NA	intron (NM_181893, intron 1 of 6)	MIRb|SINE|MIR	2685	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
17682	chr1	157763471	157763630	+	0	NA	intron (NM_030764, intron 7 of 11)	L1M2|LINE|L1	13582	NR_125358	79368		NM_030764	ENSG00000132704	FCRL2	CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C	Fc receptor like 2	protein-coding
193749	chr6	31271801	31272600	+	0	NA	promoter-TSS (NM_002117).2	promoter-TSS (NM_002117).2	-64	NM_001243042	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
48631	chr12	10388451	10388980	+	0	NA	intron (NM_001199805, intron 7 of 12)	intron (NM_001199805, intron 7 of 12)	1326	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
69915	chr14	99514371	99514680	+	0	NA	3' UTR (NM_001144995, exon 6 of 6)	3' UTR (NM_001144995, exon 6 of 6)	33116	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
50627	chr12	48704251	48704650	+	0	NA	intron (NM_001240, intron 3 of 8)	MER1A|DNA|hAT-Charlie	12257	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
49498	chr12	25320501	25321100	+	0	NA	Intergenic	L2c|LINE|L2	-69871	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
229134	chr9	114474571	114474730	+	0	NA	intron (NM_015404, intron 2 of 11)	L2c|LINE|L2	28565	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
43778	chr11	86257021	86257100	+	0	NA	intron (NM_001330334, intron 5 of 9)	AluJr|SINE|Alu	12307	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
30265	chr10	75129301	75129700	+	0	NA	intron (NM_144660, intron 1 of 4)	AluSc5|SINE|Alu	17844	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
92769	chr17	15587621	15588300	+	0	NA	3' UTR (NM_006382, exon 12 of 12)	3' UTR (NM_006382, exon 12 of 12)	-24329	NM_145301	201158		NM_145301	ENSG00000175106	TVP23C	FAM18B2	trans-golgi network vesicle protein 23 homolog C	protein-coding
88154	chr16	81668501	81670000	+	0	NA	intron (NM_030629, intron 7 of 20)	intron (NM_030629, intron 7 of 20)	3896	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
153207	chr22	23891871	23892400	+	0	NA	intron (NR_003082, intron 4 of 4)	MIR|SINE|MIR	-2248	NM_002415	4282		NM_002415	ENSG00000240972	MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor	protein-coding
185579	chr5	131389051	131389150	+	0	NA	intron (NM_001038702, intron 3 of 4)	AluJb|SINE|Alu	125047	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
71982	chr15	25788101	25788300	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	60625	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
149629	chr21	33406351	33407080	+	0	NA	intron (NM_005534, intron 1 of 6)	AluJb|SINE|Alu	3302	NM_005534	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
136355	chr2	176082321	176082580	+	0	NA	intron (NM_001080458, intron 1 of 2)	CpG-16785	1512	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
29815	chr10	72307451	72307550	+	0	NA	Intergenic	AluSq2|SINE|Alu	33576	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
123346	chr19	53867001	53868300	+	0	NA	promoter-TSS (NM_001020819)	promoter-TSS (NM_001020819)	-215	NM_001020819	91663		NM_138373	ENSG00000179820	MYADM	SB135	myeloid associated differentiation marker	protein-coding
138546	chr2	207536971	207537350	+	0	NA	intron (NR_163946, intron 1 of 8)	AluSc|SINE|Alu	7198	NM_134442	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
224467	chr9	15551371	15551530	+	0	NA	Intergenic	AluY|SINE|Alu	-1593	NM_001348002	203238		NM_173550	ENSG00000164989	CCDC171	C9orf93|bA536D16.1|bA778P13.1	coiled-coil domain containing 171	protein-coding
178722	chr4	152786851	152786950	+	0	NA	intron (NM_001025593, intron 1 of 7)	L2b|LINE|L2	6946	NM_001025595	27236		NM_014447	ENSG00000164144	ARFIP1	HSU52521	ADP ribosylation factor interacting protein 1	protein-coding
155779	chr22	39245721	39246200	+	0	NA	promoter-TSS (NM_002608)	promoter-TSS (NM_002608)	-978	NM_002608	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
85174	chr16	46816671	46817030	+	0	NA	intron (NM_001001436, intron 2 of 3)	MLT1J|LTR|ERVL-MaLR	14198	NR_145837	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
15129	chr1	148686951	148687530	+	0	NA	Intergenic	Intergenic	-7476	NM_001364008	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
11121	chr1	86429201	86429400	+	0	NA	intron (NM_006536, intron 3 of 13)	intron (NM_006536, intron 3 of 13)	5129	NM_006536	9635		NM_006536	ENSG00000137975	CLCA2	CACC|CACC3|CLCRG2|CaCC-3	chloride channel accessory 2	protein-coding
200644	chr6	137024851	137025150	+	0	NA	intron (NM_001278724, intron 1 of 5)	intron (NM_001278724, intron 1 of 5)	19312	NM_001278722	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
40529	chr11	64295751	64296250	+	0	NA	intron (NR_133661, intron 2 of 6)	intron (NR_133661, intron 2 of 6)	4002	NM_001317090	50801		NM_016611	ENSG00000182450	KCNK4	FHEIG|K2p4.1|TRAAK|TRAAK1	potassium two pore domain channel subfamily K member 4	protein-coding
231454	chr9	131274401	131275100	+	0	NA	intron (NM_033387, intron 1 of 1)	intron (NM_033387, intron 1 of 1)	1760	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
23268	chr1	227898551	227898850	+	0	NA	Intergenic	Intergenic	42983	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
2804	chr1	10943921	10944500	+	0	NA	Intergenic	Intergenic	22477	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
69727	chr14	98228471	98228630	+	0	NA	Intergenic	Intergenic	-250426	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
86597	chr16	67280721	67281050	+	0	NA	exon (NM_001129729, exon 4 of 22)	exon (NM_001129729, exon 4 of 22)	1353	NM_001129729	25894		NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
161949	chr3	46209301	46209800	+	0	NA	Intergenic	Intergenic	-1237	NM_001295	1230		NM_001295	ENSG00000163823	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	C-C motif chemokine receptor 1	protein-coding
169001	chr3	152430821	152431280	+	0	NA	intron (NM_207295, intron 3 of 8)	intron (NM_207295, intron 3 of 8)	-90060	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
105915	chr18	3450401	3450900	+	0	NA	promoter-TSS (NM_001374397)	promoter-TSS (NM_001374397)	478	NM_003244	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
108453	chr18	70288701	70289480	+	0	NA	promoter-TSS (NM_004232)	promoter-TSS (NM_004232)	45	NM_004232	9306		NM_004232	ENSG00000170677	SOCS6	CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4	suppressor of cytokine signaling 6	protein-coding
190594	chr5	181104771	181105450	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	20194	NM_001258283	26693		NM_001258283	ENSG00000185372	OR2V1	OR2V1P|OST265	olfactory receptor family 2 subfamily V member 1	protein-coding
129110	chr2	65132721	65134180	+	0	NA	Intergenic	AluSz|SINE|Alu	-3149	NM_015543	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
11828	chr1	92860551	92860850	+	0	NA	intron (NM_001252269, intron 1 of 3)	AluSx|SINE|Alu	16450	NM_001252271	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
199217	chr6	111804011	111805190	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-44683	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
50974	chr12	49556401	49556830	+	0	NA	intron (NM_001314030, intron 13 of 14)	intron (NM_001314030, intron 13 of 14)	9824	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
228299	chr9	98105921	98106630	+	0	NA	intron (NM_014788, intron 2 of 5)	intron (NM_014788, intron 2 of 5)	12947	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
169334	chr3	159992021	159992280	+	0	NA	intron (NM_001354583, intron 2 of 5)	L2b|LINE|L2	3315	NM_001354582	3592		NM_000882	ENSG00000168811	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
229616	chr9	123998901	124000450	+	0	NA	Intergenic	CpG	9721	NR_135129	100505588		NR_135129	ENSG00000236668	LHX2-AS1	-	LHX2 antisense RNA 1	ncRNA
200743	chr6	137777471	137777830	+	0	NA	Intergenic	Intergenic	-38613	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
106178	chr18	10519671	10520340	+	0	NA	Intergenic	Intergenic	-6022	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
233118	chr9	137136621	137137400	+	0	NA	Intergenic	Intergenic	-2144	NM_007327	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
61931	chr13	78597071	78597230	+	0	NA	non-coding (NR_158457, exon 1 of 1)	non-coding (NR_158457, exon 1 of 1)	1028	NR_158457	780529		NR_158457	ENSG00000271776	LOC780529	-	uncharacterized LOC780529	ncRNA
177433	chr4	112521051	112521430	+	0	NA	intron (NR_161159, intron 1 of 3)	intron (NR_161159, intron 1 of 3)	-5060	NM_024019	63973		NM_024019	ENSG00000178403	NEUROG2	Atoh4|Math4A|NGN2|bHLHa8|ngn-2	neurogenin 2	protein-coding
65939	chr14	55416621	55417280	+	0	NA	intron (NM_199047, intron 6 of 6)	tRNA-Cys-TGY|tRNA|tRNA	-5120	NM_014924	22863		NM_014924	ENSG00000126775	ATG14	ATG14L|BARKOR|KIAA0831	autophagy related 14	protein-coding
189455	chr5	173009321	173009680	+	0	NA	intron (NM_003945, intron 2 of 3)	AluSz6|SINE|Alu	-11226	NR_002988	677841		NR_002988	ENSG00000212402	SNORA74B	U19-2	small nucleolar RNA, H/ACA box 74B	snoRNA
52151	chr12	54270921	54271380	+	0	NA	intron (NR_157844, intron 1 of 1)	L1M5|LINE|L1	8535	NR_157844	112935960		NR_157844	ENSG00000257596	SCAT2	CBX5-AS1	S-phase cancer associated transcript 2	ncRNA
46785	chr11	130068701	130071180	+	0	NA	promoter-TSS (NM_001382531)	promoter-TSS (NM_001382531)	46	NM_001142276	334		NM_001642	ENSG00000084234	APLP2	APLP-2|APPH|APPL2|CDEBP	amyloid beta precursor like protein 2	protein-coding
137241	chr2	191689651	191690150	+	0	NA	promoter-TSS (NR_131917)	promoter-TSS (NR_131917)	-281	NR_131917	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
216447	chr8	19509701	19509900	+	0	NA	intron (NM_001354497, intron 1 of 7)	intron (NM_001354497, intron 1 of 7)	92745	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
175261	chr4	67327151	67327580	+	0	NA	Intergenic	Intergenic	94635	NR_110747	101927237		NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
121093	chr19	45904371	45904600	+	0	NA	Intergenic	AluSx|SINE|Alu	-1872	NM_001012643	339344		NM_001012643	ENSG00000176182	MYPOP	P42pop	Myb related transcription factor, partner of profilin	protein-coding
117377	chr19	19581451	19581750	+	0	NA	intron (NM_025245, intron 2 of 7)	intron (NM_025245, intron 2 of 7)	37087	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
62422	chr13	99302551	99303200	+	0	NA	intron (NM_004951, intron 1 of 1)	intron (NM_004951, intron 1 of 1)	4524	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
10271	chr1	64675771	64676000	+	0	NA	intron (NM_001293274, intron 19 of 25)	intron (NM_001293274, intron 19 of 25)	-69088	NM_001366165	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
65288	chr14	50044951	50046150	+	0	NA	intron (NR_131171, intron 4 of 8)	intron (NR_131171, intron 4 of 8)	-38030	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
143314	chr20	25390061	25392580	+	0	NA	promoter-TSS (NM_015600)	promoter-TSS (NM_015600)	-485	NM_001042472	26090		NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12	abhydrolase domain containing 12, lysophospholipase	protein-coding
191796	chr6	14228451	14228750	+	0	NA	Intergenic	Intergenic	56854	NR_108097	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
16386	chr1	154403211	154404000	+	0	NA	non-coding (NR_147855, exon 2 of 2)	non-coding (NR_147855, exon 2 of 2)	-1738	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
20850	chr1	201877751	201878150	+	0	NA	3' UTR (NM_018085, exon 24 of 24)	3' UTR (NM_018085, exon 24 of 24)	-10719	NR_030775	149345		NM_198149	ENSG00000198892	SHISA4	C1orf40|TMEM58	shisa family member 4	protein-coding
196263	chr6	42928751	42930850	+	0	NA	intron (NM_001318858, intron 1 of 4)	CpG	320	NR_134891	107080644		NM_001318856		CNPY3-GNMT	-	CNPY3-GNMT readthrough	protein-coding
163968	chr3	53035751	53036850	+	0	NA	intron (NM_016329, intron 1 of 20)	Charlie15a|DNA|hAT-Charlie	9773	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
97459	chr17	43701001	43701850	+	0	NA	Intergenic	Intergenic	-39503	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
7975	chr1	37858821	37860360	+	0	NA	promoter-TSS (NM_005955)	promoter-TSS (NM_005955)	2	NM_005955	4520		NM_005955	ENSG00000188786	MTF1	MTF-1|ZRF	metal regulatory transcription factor 1	protein-coding
14469	chr1	144480171	144480600	+	0	NA	Intergenic	Intergenic	-18716	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
54074	chr12	76043001	76043400	+	0	NA	3' UTR (NM_004537, exon 15 of 15)	3' UTR (NM_004537, exon 15 of 15)	-11424	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
169280	chr3	158102951	158104430	+	0	NA	intron (NM_001163678, intron 1 of 4)	CpG	2473	NM_006884	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
184362	chr5	97111721	97111980	+	0	NA	intron (NM_153234, intron 2 of 5)	intron (NM_153234, intron 2 of 5)	30761	NM_153234	167410		NM_153234	ENSG00000145721	LIX1	C5orf11|Lft	limb and CNS expressed 1	protein-coding
53338	chr12	64635421	64635680	+	0	NA	intron (NR_040718, intron 1 of 3)	MIR|SINE|MIR	-12945	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52858	chr12	57111901	57113030	+	0	NA	Intergenic	Intergenic	-1103	NM_001178080	6778		NM_003153	ENSG00000166888	STAT6	D12S1644|HIES6|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6	protein-coding
102625	chr17	76003021	76003280	+	0	NA	intron (NM_001258, intron 6 of 7)	intron (NM_001258, intron 6 of 7)	2244	NM_001258	1018		NM_001258	ENSG00000250506	CDK3	-	cyclin dependent kinase 3	protein-coding
91877	chr17	7254501	7254700	+	0	NA	exon (NM_015362, exon 5 of 9)	exon (NM_015362, exon 5 of 9)	2174	NR_145515	23587		NM_015362	ENSG00000170291	ELP5	C17orf81|DERP6|HSPC002|MST071|MSTP071	elongator acetyltransferase complex subunit 5	protein-coding
76153	chr15	72670471	72671230	+	0	NA	Intergenic	Intergenic	-15329	NR_045565	585		NM_033028	ENSG00000140463	BBS4	-	Bardet-Biedl syndrome 4	protein-coding
163892	chr3	52516851	52517150	+	0	NA	exon (NM_015136, exon 42 of 69)	exon (NM_015136, exon 42 of 69)	16857	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
183614	chr5	80215921	80216700	+	0	NA	intron (NM_001174072, intron 1 of 11)	MER20|DNA|hAT-Charlie	39738	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
107540	chr18	48605471	48605630	+	0	NA	intron (NM_001142397, intron 2 of 12)	intron (NM_001142397, intron 2 of 12)	-65050	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
217041	chr8	23261371	23261900	+	0	NA	3' UTR (NM_001317899, exon 10 of 10)	3' UTR (NM_001317899, exon 10 of 10)	14994	NM_001317899	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
128410	chr2	55234271	55234630	+	0	NA	intron (NM_001135592, intron 4 of 5)	AluJb|SINE|Alu	286	NR_039624	100616345		NR_039624	ENSG00000283795	MIR4426	-	microRNA 4426	ncRNA
109153	chr19	80201	80550	+	0	NA	Intergenic	MLT1F2-int|LTR|ERVL-MaLR	-2685	NR_026818	645520		NR_026818	ENSG00000237613	FAM138A	F379|FAM138F	family with sequence similarity 138 member A	ncRNA
144662	chr20	36155971	36156130	+	0	NA	promoter-TSS (NR_147703)	promoter-TSS (NR_147703)	-290	NR_147703	100130373		NR_147703		EPB41L1-AS1	-	EPB41L1 antisense RNA 1	ncRNA
180850	chr5	32590121	32590930	+	0	NA	intron (NM_006713, intron 2 of 4)	intron (NM_006713, intron 2 of 4)	4968	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
211457	chr7	105088201	105088400	+	0	NA	intron (NM_182931, intron 13 of 26)	intron (NM_182931, intron 13 of 26)	74095	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
18439	chr1	161506751	161507050	+	0	NA	intron (NM_001375296, intron 3 of 5)	intron (NM_001375296, intron 3 of 5)	1443	NM_001375297	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
110649	chr19	2239801	2240400	+	0	NA	intron (NM_007165, intron 1 of 8)	intron (NM_007165, intron 1 of 8)	3276	NM_007165	8175		NM_007165	ENSG00000104897	SF3A2	PRP11|PRPF11|SAP62|SF3a66	splicing factor 3a subunit 2	protein-coding
223843	chr9	10801	12100	+	0	NA	promoter-TSS (NR_051986)	promoter-TSS (NR_051986)	-537	NR_051986	100287596		NR_051986		DDX11L5	-	DEAD/H-box helicase 11 like 5 (pseudogene)	pseudo
121480	chr19	47112901	47114850	+	0	NA	promoter-TSS (NM_015168)	promoter-TSS (NM_015168)	-99	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
74084	chr15	52682601	52683130	+	0	NA	intron (NM_001385021, intron 1 of 10)	intron (NM_001385021, intron 1 of 10)	-3477	NR_169540	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
195037	chr6	35483101	35483700	+	0	NA	intron (NM_003214, intron 3 of 12)	intron (NM_003214, intron 3 of 12)	12892	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
31967	chr10	100737501	100738300	+	0	NA	intron (NM_001374303, intron 1 of 2)	CpG	2504	NM_001304569	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
10470	chr1	66338321	66338750	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	6427	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
1373	chr1	2522301	2522950	+	0	NA	intron (NM_018216, intron 1 of 18).2	intron (NM_018216, intron 1 of 18).2	3971	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
108025	chr18	58864601	58865150	+	0	NA	promoter-TSS (NM_001353534)	promoter-TSS (NM_001353534)	-2	NM_001353534	55205		NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
29945	chr10	73478671	73478830	+	0	NA	intron (NM_001142354, intron 2 of 12)	intron (NM_001142354, intron 2 of 12)	-17002	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
90693	chr17	1739101	1739830	+	0	NA	TTS (NM_001163673)	TTS (NM_001163673)	-3406	NM_000934	5345		NM_000934	ENSG00000167711	SERPINF2	A2AP|AAP|ALPHA-2-PI|API|PLI|alpha2AP	serpin family F member 2	protein-coding
197196	chr6	63586951	63587600	+	0	NA	Intergenic	L1PA10|LINE|L1	14795	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
226235	chr9	66264971	66265700	+	0	NA	Intergenic	GSATII|Satellite|centr	-100429	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
62525	chr13	99527071	99527800	+	0	NA	intron (NM_004800, intron 3 of 16)	THE1C|LTR|ERVL-MaLR	25963	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
23101	chr1	226672271	226672800	+	0	NA	intron (NR_103784, intron 1 of 1)	LTR56|LTR|ERV1	2533	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
131345	chr2	96159251	96159900	+	0	NA	Intergenic	Intergenic	-14135	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
158963	chr3	10238221	10239350	+	0	NA	exon (NM_001570, exon 12 of 13)	exon (NM_001570, exon 12 of 13)	-9674	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
189023	chr5	168947321	168947580	+	0	NA	intron (NM_003062, intron 4 of 35)	intron (NM_003062, intron 4 of 35)	-65777	NR_109897	728095		NR_109897		SLIT3-AS1	-	SLIT3 antisense RNA 1	ncRNA
85714	chr16	56625151	56626450	+	0	NA	promoter-TSS (NM_001363555)	promoter-TSS (NM_001363555)	19	NM_175617	4493		NM_175617	ENSG00000169715	MT1E	MT-1E|MT-IE|MT1|MTD	metallothionein 1E	protein-coding
131870	chr2	98711571	98712400	+	0	NA	intron (NM_012214, intron 2 of 15)	intron (NM_012214, intron 2 of 15)	19147	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
166609	chr3	119319871	119320330	+	0	NA	intron (NR_046748, intron 1 of 1)	intron (NR_046748, intron 1 of 1)	2660	NR_046748	100874246		NR_046748	ENSG00000241155	ARHGAP31-AS1	-	ARHGAP31 antisense RNA 1	ncRNA
234746	chrX	22653221	22653300	+	0	NA	intron (NR_073010, intron 4 of 11)	intron (NR_073010, intron 4 of 11)	-346700	NM_182699	168400		NM_182699	ENSG00000184735	DDX53	CAGE|CT26	DEAD-box helicase 53	protein-coding
140153	chr2	231607571	231607950	+	0	NA	Intergenic	LTR16A|LTR|ERVL	14896	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
183713	chr5	80994921	80995180	+	0	NA	intron (NM_006909, intron 1 of 26)	AluY|SINE|Alu	-34143	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
59726	chr13	29841671	29842680	+	0	NA	intron (NM_007106, intron 1 of 4)	AluSx1|SINE|Alu	8442	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
3778	chr1	16695821	16696080	+	0	NA	intron (NR_026567, intron 10 of 10)	MER5A1|DNA|hAT-Charlie	14695	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
85675	chr16	56358171	56358330	+	0	NA	TTS (NM_020988)	TTS (NM_020988)	66739	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
236444	chrX	71541621	71542080	+	0	NA	intron (NM_181672, intron 3 of 21)	intron (NM_181672, intron 3 of 21)	8746	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
137374	chr2	196182171	196183080	+	0	NA	Intergenic	Intergenic	-11047	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
70984	chr14	104710671	104711030	+	0	NA	intron (NM_022489, intron 13 of 22)	intron (NM_022489, intron 13 of 22)	-13379	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
166959	chr3	125353351	125353730	+	0	NA	intron (NM_001348427, intron 1 of 9)	L1MD2|LINE|L1	3740	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
23808	chr1	234375101	234375300	+	0	NA	intron (NM_001206641, intron 2 of 2)	AluSx3|SINE|Alu	1499	NM_001301733	388753		NM_001012985	ENSG00000168275	COA6	C1orf31|CEMCOX4|MC4DN13	cytochrome c oxidase assembly factor 6	protein-coding
188155	chr5	150430271	150430630	+	0	NA	Intergenic	L2a|LINE|L2	-17514	NM_001025159	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
196700	chr6	44928301	44928500	+	0	NA	intron (NM_001350324, intron 10 of 11)	intron (NM_001350324, intron 10 of 11)	269370	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
199503	chr6	118681871	118682030	+	0	NA	intron (NM_001178035, intron 1 of 13)	AluSx|SINE|Alu	28125	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
151262	chr21	45363971	45364330	+	0	NA	Intergenic	Intergenic	-22160	NR_103811	388830		NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
181032	chr5	35881671	35882430	+	0	NA	Intergenic	Intergenic	25159	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
57643	chr12	122517921	122519050	+	0	NA	intron (NR_036436, intron 4 of 9)	AluSx|SINE|Alu	8451	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
49604	chr12	27501971	27502330	+	0	NA	TTS (NM_001145010)	TTS (NM_001145010)	-22056	NM_001198916	8496		NM_003622	ENSG00000110841	PPFIBP1	L2|NEDSMBA|SGT2|hSGT2|hSgt2p	PPFIA binding protein 1	protein-coding
210624	chr7	100445951	100446250	+	0	NA	Intergenic	AluJr|SINE|Alu	-9603	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
44661	chr11	110432501	110433100	+	0	NA	intron (NM_004109, intron 1 of 3)	intron (NM_004109, intron 1 of 3)	2852	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
43811	chr11	86550251	86550350	+	0	NA	intron (NR_147828, intron 4 of 14)	MIR3|SINE|MIR	121898	NR_147831	10873		NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
63908	chr14	21917771	21918800	+	0	NA	Intergenic	Intergenic	-247268	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
76335	chr15	74418971	74419130	+	0	NA	intron (NM_001146029, intron 1 of 12)	intron (NM_001146029, intron 1 of 12)	-7618	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
83447	chr16	27318221	27319630	+	0	NA	intron (NM_001257997, intron 1 of 9)	intron (NM_001257997, intron 1 of 9)	4951	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
189329	chr5	172165871	172166230	+	0	NA	intron (NM_005990, intron 1 of 18)	AluSp|SINE|Alu	22174	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
171416	chr3	196216621	196217350	+	0	NA	intron (NM_152672, intron 1 of 8)	intron (NM_152672, intron 1 of 8)	451	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
60626	chr13	42321351	42321650	+	0	NA	3' UTR (NM_016248, exon 13 of 13)	3' UTR (NM_016248, exon 13 of 13)	49348	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
195210	chr6	36123471	36125430	+	0	NA	Intergenic	AluSq|SINE|Alu	-6063	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
146021	chr20	46757871	46758350	+	0	NA	Intergenic	Intergenic	48461	NM_030777	81031		NM_030777	ENSG00000197496	SLC2A10	ATORS|ATS|GLUT10	solute carrier family 2 member 10	protein-coding
157356	chr22	44691271	44691630	+	0	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	-10748	NM_181334	553158		NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
125117	chr2	9781271	9781500	+	0	NA	Intergenic	Intergenic	-62057	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
156020	chr22	39949971	39950630	+	0	NA	intron (NM_001291826, intron 2 of 6)	intron (NM_001291826, intron 2 of 6)	3483	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
220921	chr8	107495901	107496280	+	0	NA	intron (NM_001199859, intron 1 of 8)	intron (NM_001199859, intron 1 of 8)	1828	NM_001199859	284		NM_001146	ENSG00000154188	ANGPT1	AGP1|AGPT|AGPT-1|ANG1|HAE5	angiopoietin 1	protein-coding
43118	chr11	75239001	75239400	+	0	NA	Intergenic	Intergenic	-1574	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
51972	chr12	53939701	53940130	+	0	NA	promoter-TSS (NR_047507)	promoter-TSS (NR_047507)	-272	NR_047507	100874366		NR_047507	ENSG00000249641	HOXC13-AS	HOXC-AS5	HOXC13 antisense RNA	ncRNA
88655	chr16	85650101	85650300	+	0	NA	intron (NM_001278184, intron 2 of 14)	intron (NM_001278184, intron 2 of 14)	36878	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
113593	chr19	10280071	10281300	+	0	NA	intron (NM_000201, intron 2 of 6)	AluSp|SINE|Alu	-6270	NM_001039132	3386		NM_001544	ENSG00000105371	ICAM4	CD242|LW	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	protein-coding
153513	chr22	26502871	26503780	+	0	NA	intron (NM_001346862, intron 5 of 12)	L2a|LINE|L2	9148	NM_012143	24144		NM_012143	ENSG00000100109	TFIP11	NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6	tuftelin interacting protein 11	protein-coding
55309	chr12	103870651	103870750	+	0	NA	intron (NR_027249, intron 9 of 15)	intron (NR_027249, intron 9 of 15)	-29466	NM_001031701	51559		NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
51301	chr12	51249071	51249450	+	0	NA	intron (NM_001031628, intron 2 of 3)	MER21A|LTR|ERVL	10434	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
30805	chr10	84523671	84523830	+	0	NA	Intergenic	Intergenic	98581	NM_001284242	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
30491	chr10	79283801	79284000	+	0	NA	intron (NM_020338, intron 8 of 24)	intron (NM_020338, intron 8 of 24)	-63569	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
178486	chr4	149176071	149176330	+	0	NA	intron (NR_125887, intron 2 of 12)	L1PA7|LINE|L1	21905	NR_125887	101927849		NR_125887	ENSG00000248210	LINC02355	-	long intergenic non-protein coding RNA 2355	ncRNA
230771	chr9	128910671	128911900	+	0	NA	intron (NM_019594, intron 3 of 3)	intron (NM_019594, intron 3 of 3)	-9697	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
136429	chr2	176494951	176495250	+	0	NA	Intergenic	Intergenic	105952	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
85222	chr16	47565301	47565780	+	0	NA	intron (NM_001031835, intron 8 of 31)	intron (NM_001031835, intron 8 of 31)	104209	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
206427	chr7	32692771	32692930	+	0	NA	intron (NR_036680, intron 2 of 16)	THE1D|LTR|ERVL-MaLR	26318	NR_036680	100129460		NR_036680		DPY19L1P1	-	DPY19L1 pseudogene 1	pseudo
32149	chr10	101301551	101301950	+	0	NA	Intergenic	Intergenic	-38200	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
200258	chr6	132494771	132495350	+	0	NA	intron (NR_137169, intron 2 of 8)	intron (NR_137169, intron 2 of 8)	17723	NM_001326578	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
227622	chr9	92790401	92791350	+	0	NA	Intergenic	MER21-int|LTR|ERVL	17212	NR_136301	101929748		NR_136301	ENSG00000288062	LOC101929748	-	uncharacterized LOC101929748	ncRNA
183136	chr5	74934951	74935750	+	0	NA	Intergenic	Intergenic	-68384	NM_015566	26049		NM_015566	ENSG00000198780	FAM169A	SLAP|SLAP75	family with sequence similarity 169 member A	protein-coding
228434	chr9	99826671	99827030	+	0	NA	intron (NM_173200, intron 3 of 8)	intron (NM_173200, intron 3 of 8)	4965	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
166731	chr3	121659771	121661330	+	0	NA	intron (NM_005335, intron 1 of 13)	intron (NM_005335, intron 1 of 13)	353	NM_005335	3059		NM_005335	ENSG00000180353	HCLS1	CTTNL|HS1|lckBP1|p75	hematopoietic cell-specific Lyn substrate 1	protein-coding
69845	chr14	99248901	99250180	+	0	NA	intron (NM_001282237, intron 2 of 3)	MIR3|SINE|MIR	22657	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
107273	chr18	44356721	44356980	+	0	NA	intron (NR_110792, intron 2 of 4)	L1PA7|LINE|L1	174847	NR_110792	101927921		NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
165287	chr3	75768221	75768680	+	0	NA	intron (NM_001324028, intron 2 of 5)	intron (NM_001324028, intron 2 of 5)	16552	NM_001128223	100131827		NM_001128223	ENSG00000227124	ZNF717	OB1|X17|ZNF838	zinc finger protein 717	protein-coding
210723	chr7	100609151	100609250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2962	NM_001040097	64598		NM_023948	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
37703	chr11	30143251	30143350	+	0	NA	Intergenic	Intergenic	-87714	NM_001382289	2488		NM_000510	ENSG00000131808	FSHB	HH24	follicle stimulating hormone subunit beta	protein-coding
38812	chr11	47291151	47291600	+	0	NA	intron (NR_164838, intron 18 of 30)	intron (NR_164838, intron 18 of 30)	-19265	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
112645	chr19	6812871	6813030	+	0	NA	intron (NM_005428, intron 1 of 26)	intron (NM_005428, intron 1 of 26)	40242	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
27091	chr10	27360471	27360850	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	53708	NM_001034842	374308		NM_001034842	ENSG00000182077	PTCHD3	PTR	patched domain containing 3 (gene/pseudogene)	protein-coding
172943	chr4	3522171	3522330	+	0	NA	intron (NR_110005, intron 2 of 7)	intron (NR_110005, intron 2 of 7)	9899	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
238245	chrX	144113371	144113530	+	0	NA	Intergenic	L1PA8A|LINE|L1	229379	NR_121210	389898		NM_001012989	ENSG00000276380	UBE2NL	Li174	ubiquitin conjugating enzyme E2 N like (gene/pseudogene)	protein-coding
197168	chr6	59654771	59654930	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1693404	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
116132	chr19	17333601	17334200	+	0	NA	intron (NM_020959, intron 1 of 17)	L2c|LINE|L2	955	NM_020959	57719		NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
6801	chr1	30902501	30902900	+	0	NA	intron (NM_014654, intron 1 of 4)	intron (NM_014654, intron 1 of 4)	6058	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
82488	chr16	17359551	17360430	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	110970	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
48511	chr12	9906551	9907300	+	0	NA	intron (NM_207375, intron 4 of 4)	HERVI-int|LTR|ERV1	25436	NM_001190765	100431172		NM_001190765	ENSG00000256797	KLRF2	NKp65	killer cell lectin like receptor F2	protein-coding
180782	chr5	32182501	32182900	+	0	NA	Intergenic	AluJb|SINE|Alu	-8381	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
14963	chr1	147931571	147931930	+	0	NA	intron (NM_016334, intron 1 of 13)	L1PA16|LINE|L1	3330	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
229866	chr9	126470651	126471800	+	0	NA	intron (NM_033446, intron 7 of 9)	MIRb|SINE|MIR	-60721	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
64589	chr14	25049951	25050250	+	0	NA	promoter-TSS (NM_001351943)	promoter-TSS (NM_001351943)	197	NM_001304476	29091		NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding
39408	chr11	60841721	60843430	+	0	NA	exon (NM_024098, exon 1 of 4)	exon (NM_024098, exon 1 of 4)	462	NM_024098	79080		NM_024098	ENSG00000110104	CCDC86	Cgr1	coiled-coil domain containing 86	protein-coding
97953	chr17	45231521	45232100	+	0	NA	intron (NM_005892, intron 2 of 26)	intron (NM_005892, intron 2 of 26)	9925	NM_005892	752		NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin like 1	protein-coding
124022	chr19	55480701	55481100	+	0	NA	intron (NM_033113, intron 2 of 2)	intron (NM_033113, intron 2 of 2)	4283	NM_033113	89887		NM_033113	ENSG00000197483	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
39160	chr11	57323401	57323650	+	0	NA	intron (NM_033396, intron 1 of 11)	intron (NM_033396, intron 1 of 11)	1427	NM_033396	85456		NM_033396	ENSG00000149115	TNKS1BP1	CNOT12|TAB182	tankyrase 1 binding protein 1	protein-coding
176839	chr4	102578721	102579350	+	0	NA	exon (NM_003998, exon 8 of 24)	exon (NM_003998, exon 8 of 24)	-76549	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
75547	chr15	66842251	66843380	+	0	NA	Intergenic	CpG	113700	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
45846	chr11	119385021	119385650	+	0	NA	intron (NR_034160, intron 1 of 3)	AluJr|SINE|Alu	3557	NR_034160	100499227		NR_034160		USP2-AS1	THY1-AS1|gLINC	USP2 antisense RNA 1	ncRNA
218875	chr8	60531501	60531980	+	0	NA	intron (NM_001242644, intron 1 of 6)	intron (NM_001242644, intron 1 of 6)	14753	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
62899	chr13	110822601	110823030	+	0	NA	Intergenic	Intergenic	9110	NR_158538	105370362		NR_158538		LOC105370362	-	uncharacterized LOC105370362	ncRNA
44879	chr11	114315871	114316230	+	0	NA	Intergenic	Intergenic	19651	NM_006169	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
84007	chr16	29458421	29459180	+	0	NA	TTS (NM_024044).2	TTS (NM_024044).2	-1113	NM_177552	6818		NM_003166	ENSG00000261052	SULT1A3	HAST|HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|ST1A5|STM|TL-PST	sulfotransferase family 1A member 3	protein-coding
92618	chr17	10063701	10063930	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-27158	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
40200	chr11	63023901	63024350	+	0	NA	Intergenic	Intergenic	-8280	NM_001184733	9376		NM_004254	ENSG00000149452	SLC22A8	OAT3	solute carrier family 22 member 8	protein-coding
234779	chrX	23930971	23931550	+	0	NA	intron (NM_152761, intron 6 of 8)	intron (NM_152761, intron 6 of 8)	23254	NM_001169574	254158		NM_152761	ENSG00000165182	CXorf58	-	chromosome X open reading frame 58	protein-coding
218340	chr8	42892371	42892530	+	0	NA	intron (NM_030954, intron 1 of 6)	AluJb|SINE|Alu	3825	NR_039679	100616115		NR_039679	ENSG00000284062	MIR4469	mir-4469	microRNA 4469	ncRNA
104777	chr17	81715571	81715730	+	0	NA	intron (NM_012140, intron 3 of 10)	CpG	3366	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
162188	chr3	47001071	47001330	+	0	NA	intron (NM_001365116, intron 27 of 52)	intron (NM_001365116, intron 27 of 52)	-10342	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
143035	chr20	21124151	21124450	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-1675	NM_001276389	55857		NM_018474	ENSG00000088970	KIZ	C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69	kizuna centrosomal protein	protein-coding
65433	chr14	51241751	51242250	+	0	NA	intron (NM_030755, intron 1 of 7)	AluSc8|SINE|Alu	1753	NM_030755	81542		NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
39195	chr11	57478701	57478900	+	0	NA	Intergenic	AluSz6|SINE|Alu	18272	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
17338	chr1	156480271	156481250	+	0	NA	intron (NM_001271629, intron 4 of 10)	intron (NM_001271629, intron 4 of 10)	9927	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
32347	chr10	102300201	102300400	+	0	NA	intron (NR_165087, intron 3 of 38)	intron (NR_165087, intron 3 of 38)	54768	NR_165088	8729		NM_004193	ENSG00000107862	GBF1	ARF1GEF|CMT2GG|CMTDI2|CMTDIA	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
164394	chr3	58354071	58354530	+	0	NA	intron (NM_001349498, intron 1 of 17)	intron (NM_001349498, intron 1 of 17)	20994	NM_001349498	54899		NM_017771	ENSG00000168297	PXK	MONAKA|SLOB	PX domain containing serine/threonine kinase like	protein-coding
10063	chr1	58750321	58750580	+	0	NA	Intergenic	MIRb|SINE|MIR	33597	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
111573	chr19	4062071	4062430	+	0	NA	intron (NM_015898, intron 1 of 2)	intron (NM_015898, intron 1 of 2)	3279	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
142802	chr20	13820121	13820480	+	0	NA	non-coding (NR_147983, exon 11 of 11)	non-coding (NR_147983, exon 11 of 11)	35272	NR_147982	79133		NM_024120	ENSG00000101247	NDUFAF5	C20orf7|MC1DN16|bA526K24.2|dJ842G6.1	NADH:ubiquinone oxidoreductase complex assembly factor 5	protein-coding
224929	chr9	33000751	33002230	+	0	NA	promoter-TSS (NM_001195249)	promoter-TSS (NM_001195249)	86	NM_001195249	54840		NM_017692	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
105651	chr18	2542051	2542430	+	0	NA	intron (NM_001308401, intron 7 of 7)	L1PA3|LINE|L1	29265	NM_022840	64863		NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase 4, N6-adenosine	protein-coding
55107	chr12	98514701	98515900	+	0	NA	promoter-TSS (NM_001032283)	promoter-TSS (NM_001032283)	-273	NM_003276	7112		NM_003276	ENSG00000120802	TMPO	CMD1T|LAP2|LEMD4|PRO0868|TP	thymopoietin	protein-coding
210170	chr7	98399451	98399750	+	0	NA	intron (NM_018842, intron 1 of 13)	intron (NM_018842, intron 1 of 13)	1490	NM_018842	55971		NM_018842	ENSG00000006453	BAIAP2L1	IRTKS	BAR/IMD domain containing adaptor protein 2 like 1	protein-coding
33388	chr10	117616221	117616480	+	0	NA	Intergenic	Intergenic	-71282	NR_002791	196047		NR_002791	ENSG00000229847	EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
119548	chr19	40599401	40599850	+	0	NA	intron (NM_001042544, intron 3 of 32)	intron (NM_001042544, intron 3 of 32)	-1744	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
131521	chr2	96557851	96558250	+	0	NA	Intergenic	(CACCCCA)n|Simple_repeat|Simple_repeat	20171	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
16361	chr1	154338751	154339300	+	0	NA	intron (NM_001367934, intron 11 of 26)	intron (NM_001367934, intron 11 of 26)	10227	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
110676	chr19	2266101	2266980	+	0	NA	Intergenic	Intergenic	-2946	NM_001301020	4946		NM_004152	ENSG00000104904	OAZ1	AZ1|AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
35824	chr11	2266951	2267050	+	0	NA	Intergenic	Intergenic	3588	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
59203	chr13	22278301	22278650	+	0	NA	Intergenic	Intergenic	68190	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
197072	chr6	53793601	53796630	+	0	NA	5' UTR (NM_018214, exon 1 of 14)	5' UTR (NM_018214, exon 1 of 14)	110	NM_018214	55227		NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
96621	chr17	40561701	40562530	+	0	NA	intron (NM_001838, intron 1 of 2)	MIR|SINE|MIR	-1102	NM_001301717	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
80907	chr16	3733421	3733680	+	0	NA	intron (NM_004380, intron 28 of 30)	L1MC3|LINE|L1	-16026	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
33512	chr10	119180751	119181250	+	0	NA	Intergenic	AluSz|SINE|Alu	-2188	NM_006793	10935		NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PPPCD|PRO1748|SCAR32|SP-22|prx-III	peroxiredoxin 3	protein-coding
26934	chr10	26483501	26483700	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	45259	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
169015	chr3	152444171	152444680	+	0	NA	intron (NM_207296, intron 4 of 8)	intron (NM_207296, intron 4 of 8)	-103435	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
105901	chr18	3340021	3340280	+	0	NA	Intergenic	MER31-int|LTR|ERV1	10409	NR_146506	105371964		NR_146506	ENSG00000259256	LINC01895	-	long intergenic non-protein coding RNA 1895	ncRNA
122218	chr19	48971971	48972330	+	0	NA	intron (NM_002103, intron 12 of 15)	AluSc|SINE|Alu	6841	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
163725	chr3	52309471	52309630	+	0	NA	Intergenic	MIRb|SINE|MIR	-6769	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
88214	chr16	81836621	81836880	+	0	NA	intron (NM_002661, intron 2 of 32)	MIRb|SINE|MIR	57459	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
60448	chr13	41012901	41013530	+	0	NA	intron (NM_001370332, intron 2 of 10)	intron (NM_001370332, intron 2 of 10)	6101	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
20385	chr1	198160171	198160630	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	3402	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
24651	chr1	246927021	246927450	+	0	NA	intron (NR_136586, intron 1 of 36)	AluSx|SINE|Alu	4123	NM_015446	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
147969	chr20	62980951	62981480	+	0	NA	Intergenic	Intergenic	25749	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
203958	chr7	1558321	1559200	+	0	NA	Intergenic	Intergenic	-2555	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
236050	chrX	56068251	56068550	+	0	NA	intron (NM_001324104, intron 2 of 6)	L1PA14|LINE|L1	160115	NM_001324104	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
66834	chr14	64822951	64823680	+	0	NA	promoter-TSS (NM_001024858)	promoter-TSS (NM_001024858)	65	NM_001024858	6710		NM_000347	ENSG00000070182	SPTB	EL3|HS2|HSPTB1|SPH2	spectrin beta, erythrocytic	protein-coding
96570	chr17	40479871	40481480	+	0	NA	intron (NM_032865, intron 9 of 12)	intron (NM_032865, intron 9 of 12)	20948	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
148056	chr20	63252651	63252950	+	0	NA	intron (NM_152864, intron 1 of 6)	intron (NM_152864, intron 1 of 6)	695	NM_001363718	128414		NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	sodium/potassium transporting ATPase interacting 4	protein-coding
144916	chr20	36969171	36970050	+	0	NA	Intergenic	MER50-int|LTR|ERV1	-17902	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
219082	chr8	65835471	65836250	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	6204	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
224194	chr9	5442201	5442680	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-4515	NM_018465	55848		NM_018465	ENSG00000107020	PLGRKT	AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT)	plasminogen receptor with a C-terminal lysine	protein-coding
126661	chr2	29009301	29010330	+	0	NA	intron (NM_199280, intron 6 of 19)	intron (NM_199280, intron 6 of 19)	28517	NM_001321538	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
56228	chr12	111775351	111775650	+	0	NA	intron (NM_001204889, intron 1 of 11)	intron (NM_001204889, intron 1 of 11)	8567	NM_001204889	217		NM_000690	ENSG00000111275	ALDH2	ALDH-E2|ALDHI|ALDM	aldehyde dehydrogenase 2 family member	protein-coding
47244	chr12	1119451	1119600	+	0	NA	intron (NM_178039, intron 6 of 17)	(TG)n|Simple_repeat|Simple_repeat	91777	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
111240	chr19	3518471	3518700	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	-4371	NM_001136197	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
53682	chr12	68455021	68455280	+	0	NA	Intergenic	Intergenic	-3666	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
27321	chr10	30510401	30511030	+	0	NA	Intergenic	Intergenic	76069	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
203608	chr7	943621	944600	+	0	NA	intron (NM_001284308, intron 1 of 10)	AluJr|SINE|Alu	1706	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
105378	chr17	82702871	82703030	+	0	NA	Intergenic	Intergenic	-4252	NM_006822	10966		NM_006822	ENSG00000141542	RAB40B	RAR|SEC4L	RAB40B, member RAS oncogene family	protein-coding
182356	chr5	59799771	59800480	+	0	NA	intron (NM_001364600, intron 3 of 7)	intron (NM_001364600, intron 3 of 7)	-31277	NM_001197218	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
12914	chr1	110633251	110633550	+	0	NA	Intergenic	Intergenic	-1960	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
191925	chr6	15525151	15525250	+	0	NA	intron (NM_183040, intron 8 of 8)	intron (NM_183040, intron 8 of 8)	137828	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
86749	chr16	67649521	67650100	+	0	NA	exon (NM_001013838, exon 21 of 38)	exon (NM_001013838, exon 21 of 38)	4666	NM_001013838	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
237326	chrX	118497301	118498350	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	1916	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
116964	chr19	18865021	18865600	+	0	NA	exon (NM_002911, exon 21 of 24)	exon (NM_002911, exon 21 of 24)	30848	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
133890	chr2	130152401	130152880	+	0	NA	exon (NM_017751, exon 19 of 19)	exon (NM_017751, exon 19 of 19)	-7528	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
10609	chr1	67683621	67685700	+	0	NA	promoter-TSS (NM_001199742)	promoter-TSS (NM_001199742)	-541	NM_001924	1647		NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
229898	chr9	126524751	126524850	+	0	NA	Intergenic	Intergenic	-89128	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
119989	chr19	41912781	41914080	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	15019	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
67164	chr14	68787161	68787830	+	0	NA	TTS (NM_001244701)	TTS (NM_001244701)	5572	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
22999	chr1	226120951	226122300	+	0	NA	Intergenic	CpG	-26378	NR_146443	107985353		NR_146443	ENSG00000234478	ACBD3-AS1	-	ACBD3 antisense RNA 1	ncRNA
114641	chr19	13011051	13011150	+	0	NA	intron (NM_001365902, intron 1 of 10)	CpG	-12872	NM_001271044	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
79344	chr16	586871	587550	+	0	NA	Intergenic	Intergenic	-2147	NM_001172663	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
81890	chr16	11697271	11697630	+	0	NA	intron (NM_001324022, intron 6 of 10)	intron (NM_001324022, intron 6 of 10)	28995	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
52211	chr12	54377071	54377430	+	0	NA	intron (NM_001290002, intron 3 of 8)	intron (NM_001290002, intron 3 of 8)	7483	NM_001290001	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
102740	chr17	76251651	76253080	+	0	NA	Intergenic	Intergenic	-11872	NM_052916	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
37226	chr11	14454601	14455650	+	0	NA	Intergenic	Intergenic	44686	NM_001144061	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
87541	chr16	71908951	71909280	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluJr4|SINE|Alu	13584	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
227400	chr9	89530801	89531100	+	0	NA	Intergenic	LTR22A|LTR|ERVK	-32837	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
135155	chr2	157487821	157488080	+	0	NA	Intergenic	Intergenic	-43861	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
28508	chr10	50322221	50322480	+	0	NA	intron (NM_147156, intron 8 of 10)	intron (NM_147156, intron 8 of 10)	-70834	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
5928	chr1	26856871	26857550	+	0	NA	3' UTR (NM_032283, exon 8 of 8)	3' UTR (NM_032283, exon 8 of 8)	-5939	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
223221	chr8	143599771	143600250	+	0	NA	3' UTR (NM_032862, exon 1 of 1)	3' UTR (NM_032862, exon 1 of 1)	2179	NM_032862	84948		NM_032862	ENSG00000179886	TIGD5	-	tigger transposable element derived 5	protein-coding
36423	chr11	4182171	4182330	+	0	NA	Intergenic	Intergenic	-4902	NR_047550	100506082		NR_047550	ENSG00000254480	LINC02749	-	long intergenic non-protein coding RNA 2749	ncRNA
195804	chr6	41080351	41080980	+	0	NA	intron (NM_021705, intron 2 of 8)	intron (NM_021705, intron 2 of 8)	7691	NM_021705	4800		NM_002505	ENSG00000001167	NFYA	CBF-A|CBF-B|HAP2|NF-YA	nuclear transcription factor Y subunit alpha	protein-coding
222388	chr8	133898851	133899780	+	0	NA	intron (NR_125424, intron 3 of 3)	L2c|LINE|L2	12819	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
150582	chr21	43178301	43178500	+	0	NA	Intergenic	Intergenic	8164	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
124944	chr2	8589671	8589830	+	0	NA	Intergenic	Intergenic	-5958	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
80336	chr16	2465601	2466100	+	0	NA	TTS (NM_025108)	TTS (NM_025108)	1883	NR_106826	102465460		NR_106826	ENSG00000274805	MIR6768	hsa-mir-6768	microRNA 6768	ncRNA
126805	chr2	30428721	30429380	+	0	NA	Intergenic	Intergenic	-18196	NM_001304446	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
81865	chr16	11650201	11650530	+	0	NA	Intergenic	Intergenic	-18090	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
76213	chr15	73908201	73908600	+	0	NA	Intergenic	Intergenic	-18062	NM_005576	4016		NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase like 1	protein-coding
176765	chr4	102409301	102409500	+	0	NA	Intergenic	Intergenic	-63918	NM_001135146	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
36375	chr11	3966271	3966430	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	110288	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
66017	chr14	58262451	58263200	+	0	NA	intron (NR_038123, intron 5 of 9)	AluSz6|SINE|Alu	17982	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
88722	chr16	85987121	85987830	+	0	NA	Intergenic	Intergenic	69128	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
161872	chr3	45892701	45893280	+	0	NA	intron (NM_006641, intron 1 of 1)	L1ME1|LINE|L1	6447	NM_006641	10803		NM_006641	ENSG00000173585	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	C-C motif chemokine receptor 9	protein-coding
194090	chr6	31898301	31899130	+	0	NA	TTS (NM_181842).4	TTS (NM_181842).4	932	NM_001282457	717		NM_000063	ENSG00000166278	C2	ARMD14|CO2	complement C2	protein-coding
77416	chr15	83383901	83384150	+	0	NA	Intergenic	L1PA2|LINE|L1	-63203	NM_001324183	6457		NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3 domain containing GRB2 like 3, endophilin A3	protein-coding
158514	chr3	3134651	3136030	+	0	NA	intron (NM_182916, intron 2 of 7)	intron (NM_182916, intron 2 of 7)	8400	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
118594	chr19	36547101	36547380	+	0	NA	exon (NM_001145649, exon 6 of 6)	exon (NM_001145649, exon 6 of 6)	-18969	NM_001166037	339324		NM_001012756	ENSG00000254004	ZNF260	OZRF1|PEX1|ZFP260	zinc finger protein 260	protein-coding
43242	chr11	75507901	75509130	+	0	NA	intron (NM_030792, intron 1 of 16)	MIRb|SINE|MIR	17058	NM_001351168	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
197147	chr6	59538621	59539100	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1577414	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
127240	chr2	38670471	38670830	+	0	NA	intron (NM_138801, intron 1 of 6)	intron (NM_138801, intron 1 of 6)	4536	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
174774	chr4	47830771	47831130	+	0	NA	promoter-TSS (NR_125880)	promoter-TSS (NR_125880)	-395	NR_125880	101927179		NR_125880	ENSG00000282917	LOC101927179	-	uncharacterized LOC101927179	ncRNA
25182	chr10	5548671	5549480	+	0	NA	Intergenic	Intergenic	-22829	NR_120496	100132159		NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
145929	chr20	46016971	46017330	+	0	NA	TTS (NM_004994)	TTS (NM_004994)	-4536	NM_001134771	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
196757	chr6	45434051	45434580	+	0	NA	intron (NM_001278478, intron 2 of 5)	intron (NM_001278478, intron 2 of 5)	12040	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
19028	chr1	169679451	169679950	+	0	NA	Intergenic	MIR|SINE|MIR	29157	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
16669	chr1	155182851	155182950	+	0	NA	intron (NM_001256599, intron 9 of 9)	intron (NM_001256599, intron 9 of 9)	8146	NM_001256601	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
70943	chr14	104657951	104658250	+	0	NA	Intergenic	Intergenic	7458	NR_135293	101929634		NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
236834	chrX	79219701	79220000	+	0	NA	Intergenic	Intergenic	75162	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
235366	chrX	44892571	44892930	+	0	NA	intron (NM_001291416, intron 2 of 28)	AluSx|SINE|Alu	19562	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
176476	chr4	89509471	89509910	+	0	NA	Intergenic	Intergenic	-201890	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
183278	chr5	76484621	76485280	+	0	NA	intron (NM_006633, intron 2 of 35)	AluJr|SINE|Alu	-62459	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
21015	chr1	202888471	202890250	+	0	NA	promoter-TSS (NM_002871)	promoter-TSS (NM_002871)	-211	NM_002871	5877		NM_002871	ENSG00000183155	RABIF	MSS4|RASGFR3|RASGRF3	RAB interacting factor	protein-coding
96329	chr17	40025671	40026330	+	0	NA	TTS (NR_106944)	TTS (NR_106944)	409	NR_106944	102466757		NR_106944	ENSG00000283721	MIR6884	hsa-mir-6884	microRNA 6884	ncRNA
215131	chr7	155380171	155380630	+	0	NA	Intergenic	Intergenic	-1676	NR_147174	100286906		NR_147174		LINC03010	-	long intergenic non-protein coding RNA 3010	ncRNA
77175	chr15	80096951	80097050	+	0	NA	intron (NM_001242912, intron 2 of 6)	AluSx|SINE|Alu	-1416	NM_001242919	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
30780	chr10	84347301	84347700	+	0	NA	intron (NM_001284241, intron 1 of 2)	SVA_C|Retroposon|SVA	18911	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
151584	chr21	46636901	46637300	+	0	NA	intron (NM_206962, intron 3 of 11)	intron (NM_206962, intron 3 of 11)	1426	NM_001242866	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
28346	chr10	46782071	46782560	+	0	NA	intron (NR_111968, intron 1 of 5)	intron (NR_111968, intron 1 of 5)	-4418	NR_003611	399761		NM_001040053	ENSG00000291069	BMS1P1	BMS1LP1|BMS1LP5|BMS1P5	BMS1 pseudogene 1	pseudo
69510	chr14	95994301	95994530	+	0	NA	Intergenic	Intergenic	-44909	NM_001282464	56967		NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
160874	chr3	33442051	33442150	+	0	NA	Intergenic	Intergenic	-1695	NM_014517	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
128829	chr2	63057901	63058530	+	0	NA	TTS (NM_001199770)	TTS (NM_001199770)	7385	NM_014562	5013		NM_014562	ENSG00000115507	OTX1	-	orthodenticle homeobox 1	protein-coding
142787	chr20	13230821	13231950	+	0	NA	intron (NM_080826, intron 1 of 5)	intron (NM_080826, intron 1 of 5)	8302	NR_040043	100505536		NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	ncRNA
98708	chr17	47946251	47946350	+	0	NA	intron (NM_018129, intron 5 of 6)	intron (NM_018129, intron 5 of 6)	4729	NM_018129	55163		NM_018129	ENSG00000108439	PNPO	HEL-S-302|PDXPO	pyridoxamine 5'-phosphate oxidase	protein-coding
44167	chr11	96220151	96220780	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-120973	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
57684	chr12	122841271	122841430	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	5893	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
192049	chr6	16503701	16504850	+	0	NA	intron (NM_000332, intron 6 of 8)	intron (NM_000332, intron 6 of 8)	255909	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
4964	chr1	24138721	24139180	+	0	NA	intron (NM_021258, intron 1 of 6)	L1MB7|LINE|L1	4190	NM_021258	58985		NM_021258	ENSG00000142677	IL22RA1	CRF2-9|IL22R|IL22R1	interleukin 22 receptor subunit alpha 1	protein-coding
1747	chr1	6001471	6001630	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	8874	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
60555	chr13	41481451	41481950	+	0	NA	Intergenic	L1PA7|LINE|L1	24150	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
206535	chr7	35045371	35045730	+	0	NA	Intergenic	Intergenic	-7509	NM_015283	23333		NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like C-mannosyltransferase 1	protein-coding
184309	chr5	96884801	96885250	+	0	NA	intron (NM_001329229, intron 3 of 17)	LTR86A2|LTR|ERVL	8525	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
142619	chr20	5604731	5605700	+	0	NA	intron (NM_019593, intron 1 of 19)	intron (NM_019593, intron 1 of 19)	5791	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
75289	chr15	65131621	65131880	+	0	NA	intron (NM_005707, intron 1 of 4)	AluSp|SINE|Alu	2058	NM_005707	10081		NM_005707	ENSG00000090470	PDCD7	59K|ES18|HES18	programmed cell death 7	protein-coding
174673	chr4	41866951	41867480	+	0	NA	Intergenic	CpG	15396	NR_104143	101927074		NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA
71281	chr14	105256671	105257100	+	0	NA	intron (NM_001242788, intron 2 of 16)	intron (NM_001242788, intron 2 of 16)	-7481	NM_001242789	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
95186	chr17	35192551	35193650	+	0	NA	3' UTR (NM_152462, exon 1 of 1)	3' UTR (NM_152462, exon 1 of 1)	1293	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
99077	chr17	48955701	48956300	+	0	NA	Intergenic	AluY|SINE|Alu	-11158	NM_001317192	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
83051	chr16	22328121	22328750	+	0	NA	intron (NM_018119, intron 18 of 20).2	intron (NM_018119, intron 18 of 20).2	31026	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
45427	chr11	118398501	118399550	+	0	NA	3' UTR (NM_001204077, exon 20 of 20)	3' UTR (NM_001204077, exon 20 of 20)	-2364	NR_033759	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
26770	chr10	22849401	22849600	+	0	NA	Intergenic	Intergenic	-78524	NM_001282747	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
114975	chr19	14026171	14026650	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1738	NM_001311197	117579		NM_080864	ENSG00000171136	RLN3	H3|RXN3|ZINS4|insl7	relaxin 3	protein-coding
63162	chr13	113653251	113653930	+	0	NA	intron (NM_000705, intron 2 of 6)	intron (NM_000705, intron 2 of 6)	4608	NM_000705	496		NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting subunit beta	protein-coding
64247	chr14	23154221	23154480	+	0	NA	promoter-TSS (NM_182728)	promoter-TSS (NM_182728)	43	NM_182728	23428		NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
234797	chrX	24016871	24017030	+	0	NA	intron (NM_030624, intron 2 of 3)	MIR3|SINE|MIR	10236	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
104799	chr17	81735571	81736330	+	0	NA	Intergenic	Intergenic	23666	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
85503	chr16	50761201	50761700	+	0	NA	intron (NM_015247, intron 7 of 19)	L1MB4|LINE|L1	19035	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
75938	chr15	70252421	70252680	+	0	NA	Intergenic	Intergenic	-154633	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
74043	chr15	52463971	52465230	+	0	NA	intron (NM_000259, intron 1 of 40)	L2b|LINE|L2	64280	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
98342	chr17	46285871	46286100	+	0	NA	3' UTR (NM_001352769, exon 5 of 5)	3' UTR (NM_001352769, exon 5 of 5)	-9146	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
223433	chr8	143959471	143959950	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	-5876	NM_201379	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
139111	chr2	218958271	218958630	+	0	NA	Intergenic	Intergenic	-1216	NM_003936	8941		NM_003936	ENSG00000171450	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin dependent kinase 5 regulatory subunit 2	protein-coding
192192	chr6	17695371	17695530	+	0	NA	intron (NM_001278209, intron 1 of 22)	intron (NM_001278209, intron 1 of 22)	-10680	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
1608	chr1	3657801	3658000	+	0	NA	intron (NM_001204185, intron 1 of 12)	intron (NM_001204185, intron 1 of 12)	5335	NM_001204187	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
150786	chr21	43862951	43863430	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2033	NM_020132	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
88526	chr16	85381971	85382130	+	0	NA	Intergenic	Intergenic	-75725	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
38241	chr11	36469971	36470130	+	0	NA	Intergenic	Intergenic	40222	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
51470	chr12	52063351	52063650	+	0	NA	Intergenic	Intergenic	-6474	NM_021934	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
180807	chr5	32315271	32315430	+	0	NA	Intergenic	LTR26B|LTR|ERV1	-2411	NM_001040446	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
211400	chr7	105030451	105030550	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	16295	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
29031	chr10	66180671	66180900	+	0	NA	intron (NM_013266, intron 13 of 17)	intron (NM_013266, intron 13 of 17)	609360	NR_120647	101928913		NR_120647		LINC01515	-	long intergenic non-protein coding RNA 1515	ncRNA
122120	chr19	48812241	48813050	+	0	NA	TTS (NM_016246)	TTS (NM_016246)	-1616	NM_001190	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
190045	chr5	177523771	177523930	+	0	NA	intron (NM_001190946, intron 7 of 8)	intron (NM_001190946, intron 7 of 8)	-6889	NM_016222	51428		NM_016222	ENSG00000183258	DDX41	ABS|MPLPF	DEAD-box helicase 41	protein-coding
192227	chr6	18269121	18269780	+	0	NA	Intergenic	Intergenic	-4920	NM_001134709	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
180586	chr5	14925621	14926280	+	0	NA	Intergenic	Intergenic	-54172	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
46260	chr11	124753601	124753800	+	0	NA	exon (NM_138961, exon 7 of 7)	exon (NM_138961, exon 7 of 7)	-1445	NM_014312	23584		NM_014312	ENSG00000019102	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
140615	chr2	233421951	233422830	+	0	NA	intron (NM_001377259, intron 1 of 27)	intron (NM_001377259, intron 1 of 27)	3178	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
222626	chr8	141088501	141088700	+	0	NA	Intergenic	L2a|LINE|L2	-39989	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
58317	chr12	131070921	131071450	+	0	NA	intron (NM_001330497, intron 14 of 25)	intron (NM_001330497, intron 14 of 25)	-77209	NR_131950	105755954		NR_131950		ADGRD1-AS1	LACAT8	ADGRD1 antisense RNA 1	ncRNA
184003	chr5	90802601	90802830	+	0	NA	intron (NR_003149, intron 70 of 89)	intron (NR_003149, intron 70 of 89)	243918	NM_032119	84059		NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
228844	chr9	112218851	112219400	+	0	NA	3' UTR (NM_001244896, exon 13 of 13)	3' UTR (NM_001244896, exon 13 of 13)	-43828	NM_001282643	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
185405	chr5	129097571	129097930	+	0	NA	promoter-TSS (NR_039776)	promoter-TSS (NR_039776)	62	NR_039776	100616175		NR_039776	ENSG00000264563	MIR4633	-	microRNA 4633	ncRNA
65798	chr14	54711851	54712150	+	0	NA	intron (NM_001161576, intron 2 of 10)	intron (NM_001161576, intron 2 of 10)	-42833	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
62656	chr13	102397401	102397800	+	0	NA	intron (NM_001321942, intron 1 of 5)	intron (NM_001321942, intron 1 of 5)	3022	NR_036487	283481		NR_036487	ENSG00000272143	FGF14-AS2	-	FGF14 antisense RNA 2	ncRNA
181683	chr5	50513071	50513300	+	0	NA	Intergenic	Intergenic	-71897	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
192343	chr6	24359801	24360380	+	0	NA	intron (NM_001195610, intron 1 of 10)	CpG	-2031	NM_016356	51473		NM_016356	ENSG00000146038	DCDC2	DCDC2A|DFNB66|NPHP19|NSC|RU2|RU2S	doublecortin domain containing 2	protein-coding
107718	chr18	49808771	49808930	+	0	NA	intron (NM_006111, intron 1 of 9)	MER11A|LTR|ERVK	4683	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
213459	chr7	138886301	138887050	+	0	NA	intron (NM_001164665, intron 10 of 19)	intron (NM_001164665, intron 10 of 19)	-88479	NM_020632	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
140488	chr2	233190301	233190700	+	0	NA	intron (NM_001017915, intron 22 of 26).2	intron (NM_001017915, intron 22 of 26).2	-61071	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
159338	chr3	13073121	13074400	+	0	NA	promoter-TSS (NM_001134382)	promoter-TSS (NM_001134382)	-331	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
14072	chr1	120842571	120843450	+	0	NA	TTS (NM_001351372)	TTS (NM_001351372)	7975	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
194523	chr6	33301751	33301850	+	0	NA	intron (NM_172209, intron 6 of 6).2	intron (NM_172209, intron 6 of 6).2	-2412	NM_001243738	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
46295	chr11	124874071	124874430	+	0	NA	intron (NM_022370, intron 12 of 27)	intron (NM_022370, intron 12 of 27)	-1932	NR_163409	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
188613	chr5	157198271	157198900	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	17745	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
220558	chr8	100715951	100716250	+	0	NA	intron (NM_002568, intron 3 of 14)	intron (NM_002568, intron 3 of 14)	5988	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
152352	chr22	20439901	20440980	+	0	NA	Intergenic	Intergenic	-2615	NM_182895	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
86967	chr16	68145171	68145330	+	0	NA	intron (NM_173165, intron 3 of 9)	AluJb|SINE|Alu	59880	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
171541	chr3	196746521	196746780	+	0	NA	intron (NM_002577, intron 1 of 14)	AluSp|SINE|Alu	6793	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
181784	chr5	50775251	50775350	+	0	NA	intron (NM_024615, intron 7 of 25)	SVA_B|Retroposon|SVA	107886	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
24359	chr1	240692171	240692330	+	0	NA	Intergenic	Intergenic	-80095	NM_022469	64388		NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC|STHAG9	gremlin 2, DAN family BMP antagonist	protein-coding
61454	chr13	52011251	52012580	+	0	NA	promoter-TSS (NM_001330578)	promoter-TSS (NM_001330578)	-421	NM_001243182	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
145194	chr20	38886421	38887180	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-39617	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
109615	chr19	944151	945150	+	0	NA	intron (NM_005224, intron 3 of 8)	AluJo|SINE|Alu	18615	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
66140	chr14	60245471	60245630	+	0	NA	promoter-TSS (NM_177952)	promoter-TSS (NM_177952)	-200	NM_177952	5494		NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
127573	chr2	42649271	42649830	+	0	NA	intron (NM_001282755, intron 7 of 17)	intron (NM_001282755, intron 7 of 17)	80918	NM_001330443	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
237688	chrX	124362971	124363200	+	0	NA	intron (NM_002351, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	16522	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
9812	chr1	53845171	53845330	+	0	NA	Intergenic	Intergenic	-6954	NM_001168551	55706		NM_018087	ENSG00000058804	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
225916	chr9	40222901	40223570	+	0	NA	Intergenic	CpG	-100336	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
16003	chr1	152001571	152002330	+	0	NA	Intergenic	Intergenic	-8091	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
109488	chr19	818551	819680	+	0	NA	intron (NM_001270366, intron 2 of 7)	AluSx|SINE|Alu	2837	NM_024888	79948		NM_024888	ENSG00000129951	PLPPR3	LPPR3|LPR3|PRG-2|PRG2	phospholipid phosphatase related 3	protein-coding
27629	chr10	32946251	32946550	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	-10842	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
8558	chr1	41322851	41323150	+	0	NA	Intergenic	Intergenic	-38434	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
235398	chrX	45137701	45138050	+	0	NA	Intergenic	L1ME4a|LINE|L1	63001	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
10972	chr1	84271201	84271750	+	0	NA	Intergenic	Intergenic	-27063	NM_001010971	148418		NM_001010971	ENSG00000203943	SAMD13	DJL|HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding
188714	chr5	157321721	157322180	+	0	NA	intron (NM_014376, intron 15 of 30)	intron (NM_014376, intron 15 of 30)	23727	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
165051	chr3	71442321	71442950	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	99454	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
37514	chr11	18540171	18540580	+	0	NA	intron (NM_001261382, intron 8 of 10)	intron (NM_001261382, intron 8 of 10)	-13433	NM_006292	7251		NM_006292	ENSG00000074319	TSG101	TSG10|VPS23	tumor susceptibility 101	protein-coding
23607	chr1	230126201	230126400	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	59062	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
33716	chr10	121887071	121887430	+	0	NA	intron (NR_110006, intron 5 of 9)	intron (NR_110006, intron 5 of 9)	40781	NM_007041	11101		NM_007041	ENSG00000107669	ATE1	-	arginyltransferase 1	protein-coding
203870	chr7	1470901	1471180	+	0	NA	intron (NM_001080453, intron 46 of 47)	intron (NM_001080453, intron 46 of 47)	-11570	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
237415	chrX	119619201	119619400	+	0	NA	3' UTR (NM_145799, exon 11 of 11)	3' UTR (NM_145799, exon 11 of 11)	-12876	NR_163972	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
10301	chr1	64856721	64856980	+	0	NA	intron (NM_001321856, intron 10 of 24)	intron (NM_001321856, intron 10 of 24)	109699	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
203345	chr6	170286471	170287180	+	0	NA	intron (NM_005618, intron 4 of 10)	(AC)n|Simple_repeat|Simple_repeat	-3878	NM_001286379	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
61232	chr13	49690671	49691930	+	0	NA	exon (NM_001278636, exon 1 of 5)	exon (NM_001278636, exon 1 of 5)	186	NM_032565	84650		NM_032565	ENSG00000123179	EBPL	EBRP	EBP like	protein-coding
153964	chr22	30360851	30361250	+	0	NA	intron (NM_001017437, intron 1 of 11)	AluSg|SINE|Alu	-4156	NM_005877	10291		NM_005877	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	splicing factor 3a subunit 1	protein-coding
136810	chr2	181715021	181715380	+	0	NA	Intergenic	Intergenic	-34535	NR_146175	4760		NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|T2D|bHLHa3	neuronal differentiation 1	protein-coding
201890	chr6	150987251	150987810	+	0	NA	intron (NR_146720, intron 21 of 28)	MIR|SINE|MIR	-19478	NM_001350490	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
1226	chr1	2275001	2275550	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	46956	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
51063	chr12	49838971	49839850	+	0	NA	non-coding (NR_027499, exon 3 of 3)	non-coding (NR_027499, exon 3 of 3)	3696	NM_181708	144233		NM_181708	ENSG00000186666	BCDIN3D	-	BCDIN3 domain containing RNA methyltransferase	protein-coding
95208	chr17	35241151	35241250	+	0	NA	Intergenic	L1ME3F|LINE|L1	-1872	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
81423	chr16	8799471	8799650	+	0	NA	intron (NM_000303, intron 1 of 7)	AluSc|SINE|Alu	1721	NM_000303	5373		NM_000303	ENSG00000140650	PMM2	CDG1|CDG1a|CDGS|PMI|PMI1|PMM 2	phosphomannomutase 2	protein-coding
122773	chr19	50178971	50179400	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-15904	NM_001321449	126123		NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
134088	chr2	131532471	131532630	+	0	NA	intron (NM_001349046, intron 4 of 6)	intron (NM_001349046, intron 4 of 6)	4662	NM_138770	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
7930	chr1	37497901	37498100	+	0	NA	intron (NR_073092, intron 6 of 8)	intron (NR_073092, intron 6 of 8)	2994	NR_049844	100847010		NR_049844	ENSG00000263675	MIR5581	-	microRNA 5581	ncRNA
151036	chr21	44618521	44619280	+	0	NA	intron (NM_144991, intron 1 of 11)	L1M4|LINE|L1	6821	NM_198695	386681		NM_198695	ENSG00000187766	KRTAP10-8	KAP10.8|KRTAP18-8|KRTAP18.8	keratin associated protein 10-8	protein-coding
81375	chr16	4987571	4988130	+	0	NA	intron (NM_014692, intron 3 of 15)	CpG-9238	29520	NM_014692	9717		NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14 like lipid binding 5	protein-coding
189590	chr5	175651671	175652100	+	0	NA	Intergenic	MIRb|SINE|MIR	-6186	NR_160284	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
205684	chr7	23183671	23183830	+	0	NA	intron (NM_007342, intron 1 of 6)	intron (NM_007342, intron 1 of 6)	1702	NM_001370444	11097		NM_007342	ENSG00000136243	NUP42	CG1|NLP-1|NLP1|NLP_1|NUPL2|UIP1|hCG1	nucleoporin 42	protein-coding
181266	chr5	39263171	39263700	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	7214	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
186793	chr5	139370051	139370350	+	0	NA	TTS (NM_016480)	TTS (NM_016480)	13097	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
35978	chr11	2858851	2859630	+	0	NA	intron (NR_130721, intron 1 of 2)	intron (NR_130721, intron 1 of 2)	2329	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
131608	chr2	96893671	96894180	+	0	NA	intron (NM_016490, intron 2 of 4)	intron (NM_016490, intron 2 of 4)	1237	NM_001172667	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
147806	chr20	62649951	62650050	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	7497	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
138405	chr2	204967221	204968180	+	0	NA	intron (NM_205863, intron 3 of 21)	intron (NM_205863, intron 3 of 21)	422225	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
36865	chr11	10452621	10453030	+	0	NA	intron (NM_000480, intron 1 of 14)	MIR|SINE|MIR	2134	NM_000480	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
219734	chr8	81054651	81054950	+	0	NA	intron (NM_018440, intron 2 of 8)	MIR|SINE|MIR	57268	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
207394	chr7	44214471	44214830	+	0	NA	TTS (NM_001363678)	TTS (NM_001363678)	13672	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
106303	chr18	12866351	12866650	+	0	NA	intron (NM_080422, intron 1 of 9)	L1MB7|LINE|L1	17737	NM_002828	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
24157	chr1	235860901	235861100	+	0	NA	intron (NM_001301365, intron 1 of 52)	L1ME1|LINE|L1	5906	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
71806	chr15	21759701	21760100	+	0	NA	Intergenic	Intergenic	-23901	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
41507	chr11	66255071	66255330	+	0	NA	Intergenic	AluJb|SINE|Alu	-2094	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
135613	chr2	168157771	168157930	+	0	NA	intron (NM_013233, intron 5 of 17)	intron (NM_013233, intron 5 of 17)	89745	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
192076	chr6	16658371	16658800	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	101599	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
13185	chr1	112507671	112508050	+	0	NA	intron (NM_004185, intron 2 of 5)	intron (NM_004185, intron 2 of 5)	-1105	NM_024494	7482		NM_004185	ENSG00000134245	WNT2B	WNT13	Wnt family member 2B	protein-coding
36890	chr11	10748571	10749180	+	0	NA	Intergenic	AluSx|SINE|Alu	-2371	NM_001346279	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
131958	chr2	99471751	99472000	+	0	NA	intron (NM_001321460, intron 1 of 23)	L1MB3|LINE|L1	18142	NM_001321455	51455		NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1 DNA directed polymerase	protein-coding
211622	chr7	106021521	106024330	+	0	NA	intron (NM_001301161, intron 13 of 17)	intron (NM_001301161, intron 13 of 17)	59661	NM_152750	222256		NM_152750	ENSG00000128536	CDHR3	CDH28	cadherin related family member 3	protein-coding
186694	chr5	138668421	138669050	+	0	NA	Intergenic	Intergenic	84574	NR_134245	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
205783	chr7	23595701	23595900	+	0	NA	Intergenic	AluJb|SINE|Alu	-1582	NM_138771	90693		NM_138771	ENSG00000169193	CCDC126	-	coiled-coil domain containing 126	protein-coding
166812	chr3	122651301	122651500	+	0	NA	Intergenic	L1PA6|LINE|L1	-29439	NM_017554	54625		NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	poly(ADP-ribose) polymerase family member 14	protein-coding
225662	chr9	36456601	36457000	+	0	NA	Intergenic	Intergenic	-55602	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
208708	chr7	73299501	73300580	+	0	NA	Intergenic	L2a|LINE|L2	8786	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
19398	chr1	174154601	174154800	+	0	NA	intron (NR_121197, intron 3 of 3)	intron (NR_121197, intron 3 of 3)	4587	NR_121197	102724601		NR_121197	ENSG00000227373	RABGAP1L-DT	-	RABGAP1L divergent transcript	ncRNA
37135	chr11	13348121	13348880	+	0	NA	intron (NM_001351821, intron 3 of 19)	intron (NM_001351821, intron 3 of 19)	70710	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
52842	chr12	57089601	57091250	+	0	NA	intron (NM_005967, intron 1 of 6)	AluSg|SINE|Alu	1311	NM_005967	4665		NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding
7348	chr1	32759651	32760580	+	0	NA	intron (NM_001369553, intron 1 of 6)	intron (NM_001369553, intron 1 of 6)	-5512	NM_001198973	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
122674	chr19	49879351	49880200	+	0	NA	intron (NM_024682, intron 3 of 16)	MIR1_Amn|SINE|MIR	-1419	NM_001278160	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
193888	chr6	31592121	31593780	+	0	NA	promoter-TSS (NM_001145467).7	promoter-TSS (NM_001145467).7	56	NM_147130	259197		NM_147130	ENSG00000204475	NCR3	1C7|CD337|LY117|MALS|NKp30	natural cytotoxicity triggering receptor 3	protein-coding
31749	chr10	97781451	97782630	+	0	NA	Intergenic	Charlie15a|DNA|hAT-Charlie	-10041	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
176449	chr4	89292571	89292980	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	15025	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
35741	chr11	2100271	2100830	+	0	NA	Intergenic	Intergenic	33659	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
4720	chr1	23323551	23323650	+	0	NA	exon (NM_005826, exon 6 of 11)	exon (NM_005826, exon 6 of 11)	20684	NM_001297622	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
94220	chr17	28643071	28643580	+	0	NA	intron (NM_014680, intron 3 of 38)	intron (NM_014680, intron 3 of 38)	1833	NM_001321560	9703		NM_014680	ENSG00000007202	BLTP2	BCOX|BCOX1|CT101|FMP27|Hob|KIAA0100	bridge-like lipid transfer protein family member 2	protein-coding
135714	chr2	169095551	169095980	+	0	NA	exon (NM_199204, exon 6 of 6)	exon (NM_199204, exon 6 of 6)	14658	NM_001142271	10170		NM_005771	ENSG00000073737	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4|hRoDH-E2	dehydrogenase/reductase 9	protein-coding
96099	chr17	39623381	39624250	+	0	NA	Intergenic	MIRb|SINE|MIR	-3137	NM_032192	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
180978	chr5	35786821	35787300	+	0	NA	intron (NM_024867, intron 30 of 36)	intron (NM_024867, intron 30 of 36)	-69831	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
132923	chr2	111427621	111428080	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	67311	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
195128	chr6	35672151	35673150	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluY|SINE|Alu	-7861	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
18087	chr1	160682951	160684000	+	0	NA	intron (NM_001256030, intron 2 of 2)	MER63B|DNA|hAT-Blackjack	28347	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
219633	chr8	80147471	80148330	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	23221	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
54578	chr12	92398401	92399330	+	0	NA	Intergenic	Intergenic	-22666	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
112971	chr19	7859821	7860900	+	0	NA	intron (NM_145245, intron 12 of 18)	intron (NM_145245, intron 12 of 18)	14030	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
78789	chr15	99439801	99440200	+	0	NA	Intergenic	Intergenic	-125417	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
102518	chr17	75806901	75807300	+	0	NA	intron (NM_001080419, intron 1 of 15)	intron (NM_001080419, intron 1 of 15)	22261	NR_038131	85451		NM_001080419	ENSG00000132478	UNK	UNKEMPT|ZC3H5|ZC3HDC5	unk zinc finger	protein-coding
58119	chr12	124884871	124885580	+	0	NA	Intergenic	L2|LINE|L2	-21361	NM_001082959	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
26250	chr10	14646371	14646730	+	0	NA	intron (NM_001282695, intron 2 of 5)	L1PB3|LINE|L1	-42149	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
19156	chr1	171583721	171583980	+	0	NA	intron (NM_015172, intron 28 of 33)	Tigger3b|DNA|TcMar-Tigger	-35913	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
5631	chr1	26171651	26172130	+	0	NA	Intergenic	Intergenic	1982	NM_015871	51042		NM_015871	ENSG00000142684	ZNF593	ZT86	zinc finger protein 593	protein-coding
136204	chr2	174571171	174571330	+	0	NA	TTS (NM_001375836)	TTS (NM_001375836)	-13178	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
100791	chr17	64022521	64023380	+	0	NA	Intergenic	Tigger12A|DNA|TcMar-Tigger	-2316	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
227457	chr9	90864901	90865180	+	0	NA	intron (NM_001135052, intron 5 of 12)	intron (NM_001135052, intron 5 of 12)	37620	NM_001174167	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
168625	chr3	149657321	149658060	+	0	NA	promoter-TSS (NR_040250)	promoter-TSS (NR_040250)	335	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
161428	chr3	41959921	41960180	+	0	NA	intron (NM_017886, intron 1 of 36)	intron (NM_017886, intron 1 of 36)	2053	NM_017886	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
79383	chr16	655001	655400	+	0	NA	intron (NM_145294, intron 14 of 40)	intron (NM_145294, intron 14 of 40)	5835	NM_145294	197335		NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19|POC16	WD repeat domain 90	protein-coding
170058	chr3	182816201	182816400	+	0	NA	intron (NM_014616, intron 1 of 29)	intron (NM_014616, intron 1 of 29)	22796	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
229909	chr9	126611121	126611930	+	0	NA	Intergenic	CpG	-2403	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
221041	chr8	116740021	116740280	+	0	NA	intron (NM_003756, intron 1 of 7)	intron (NM_003756, intron 1 of 7)	15673	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
237293	chrX	115690651	115690750	+	0	NA	Intergenic	Intergenic	97149	NM_001136025	5358		NM_005032	ENSG00000102024	PLS3	BMND18|DIH5|T-plastin	plastin 3	protein-coding
16178	chr1	153792701	153793400	+	0	NA	promoter-TSS (NR_126565)	promoter-TSS (NR_126565)	-897	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
206652	chr7	36207751	36208480	+	0	NA	intron (NM_030636, intron 2 of 7)	intron (NM_030636, intron 2 of 7)	54861	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
180301	chr5	5389441	5389550	+	0	NA	Intergenic	AluY|SINE|Alu	-33182	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
119567	chr19	40648071	40648230	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	42014	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
68298	chr14	77208701	77208980	+	0	NA	intron (NM_020431, intron 1 of 23)	intron (NM_020431, intron 1 of 23)	27042	NM_020431	57156		NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|SPG87|hsCSC1	transmembrane protein 63C	protein-coding
16871	chr1	155808701	155809330	+	0	NA	intron (NM_001282861, intron 10 of 20)	AluJr4|SINE|Alu	-25183	NR_132767	106633816		NR_132767		SCARNA26B	-	small Cajal body-specific RNA 26B	ncRNA
150264	chr21	41768001	41768200	+	0	NA	Intergenic	Intergenic	-1048	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
117480	chr19	19777671	19777830	+	0	NA	intron (NM_001355194, intron 1 of 2)	intron (NM_001355194, intron 1 of 2)	1176	NM_001355194	7608		NM_001355194	ENSG00000291177	ZNF56P	ZNF56|ZNF742	zinc finger protein 56, pseudogene	pseudo
100460	chr17	61405921	61406250	+	0	NA	intron (NM_005994, intron 6 of 6)	MIR3|SINE|MIR	-5666	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
229659	chr9	124345101	124345600	+	0	NA	intron (NM_001166169, intron 8 of 9)	intron (NM_001166169, intron 8 of 9)	-8123	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
235730	chrX	48921751	48922700	+	0	NA	3' UTR (NM_017602, exon 9 of 9)	3' UTR (NM_017602, exon 9 of 9)	-3201	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
92817	chr17	16026571	16027180	+	0	NA	intron (NM_017775, intron 9 of 9)	intron (NM_017775, intron 9 of 9)	27051	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
216885	chr8	22667101	22667300	+	0	NA	intron (NR_156436, intron 1 of 9)	intron (NR_156436, intron 1 of 9)	1921	NM_018688	55909		NM_018688	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
153132	chr22	23750771	23752280	+	0	NA	promoter-TSS (NM_021916)	promoter-TSS (NM_021916)	-413	NM_021916	7621		NM_021916	ENSG00000187792	ZNF70	Cos17	zinc finger protein 70	protein-coding
206902	chr7	37901301	37901500	+	0	NA	Intergenic	Intergenic	15417	NM_003014	6424		NM_003014	ENSG00000106483	SFRP4	FRP-4|FRPHE|FRZB-2|PYL|sFRP-4	secreted frizzled related protein 4	protein-coding
180034	chr5	1056401	1056600	+	0	NA	intron (NM_006598, intron 22 of 23).2	(AC)n|Simple_repeat|Simple_repeat	6474	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
112308	chr19	5889051	5889550	+	0	NA	Intergenic	AluSx1|SINE|Alu	14490	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
162453	chr3	48471221	48471480	+	0	NA	intron (NM_016479, intron 3 of 5)	AluSx3|SINE|Alu	1808	NM_001272082	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
59522	chr13	27161501	27162150	+	0	NA	intron (NR_046547, intron 1 of 2)	AluJb|SINE|Alu	9986	NM_182488	219333		NM_182488	ENSG00000152484	USP12	UBH1|USP12L1	ubiquitin specific peptidase 12	protein-coding
129002	chr2	64820901	64821100	+	0	NA	Intergenic	Intergenic	42631	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
92034	chr17	7483701	7487250	+	0	NA	intron (NM_000937, intron 1 of 29)	AluSx|SINE|Alu	1109	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
8896	chr1	43931901	43932300	+	0	NA	TTS (NM_174970)	TTS (NM_174970)	-1220	NM_057090	9048		NM_003976	ENSG00000117407	ARTN	ART|ENOVIN|EVN|NBN	artemin	protein-coding
149791	chr21	34935321	34935860	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-46891	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
44369	chr11	102472501	102472700	+	0	NA	intron (NR_135076, intron 1 of 2)	LTR8|LTR|ERV1	5345	NR_135076	102723838		NR_135076	ENSG00000255482	LOC102723838	-	uncharacterized LOC102723838	ncRNA
159461	chr3	14130801	14131600	+	0	NA	intron (NM_024334, intron 3 of 11)	MIRb|SINE|MIR	6148	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
181298	chr5	40128071	40128430	+	0	NA	Intergenic	L1PA7|LINE|L1	75959	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
96127	chr17	39653771	39654530	+	0	NA	intron (NM_001165938, intron 2 of 13)	(TTCA)n|Simple_repeat|Simple_repeat	-11199	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
73403	chr15	42729771	42729930	+	0	NA	exon (NM_138477, exon 16 of 28)	exon (NM_138477, exon 16 of 28)	7278	NM_138477	146059		NM_138477	ENSG00000140326	CDAN1	CDA1|CDAI|CDAN1A|DLT|PRO1295	codanin 1	protein-coding
234542	chrX	19685621	19686330	+	0	NA	intron (NM_031892, intron 5 of 17)	intron (NM_031892, intron 5 of 17)	-14976	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
46486	chr11	128326801	128327530	+	0	NA	Intergenic	Intergenic	118399	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
47283	chr12	1631251	1631550	+	0	NA	exon (NM_032642, exon 2 of 5)	exon (NM_032642, exon 2 of 5)	2169	NM_032642	81029		NM_030775	ENSG00000111186	WNT5B	-	Wnt family member 5B	protein-coding
171325	chr3	195985421	195986130	+	0	NA	non-coding (NR_003264, exon 3 of 17)	non-coding (NR_003264, exon 3 of 17)	4504	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
113020	chr19	7925901	7926800	+	0	NA	promoter-TSS (NM_206833)	promoter-TSS (NM_206833)	-215	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
203521	chr7	728721	729300	+	0	NA	intron (NR_075098, intron 1 of 12)	AluSx1|SINE|Alu	-1334	NM_001164758	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
232322	chr9	134849951	134850250	+	0	NA	promoter-TSS (NR_039691)	promoter-TSS (NR_039691)	172	NR_037469	100500906		NR_037469	ENSG00000264163	MIR3689B	mir-3689b	microRNA 3689b	ncRNA
83826	chr16	28849021	28849830	+	0	NA	intron (NM_001308293, intron 1 of 10)	intron (NM_001308293, intron 1 of 10)	2825	NM_001308293	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
147587	chr20	61896351	61896530	+	0	NA	intron (NM_001794, intron 8 of 15)	intron (NM_001794, intron 8 of 15)	57222	NR_031658	100302168		NR_031658	ENSG00000284193	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
106009	chr18	7956901	7957580	+	0	NA	intron (NM_001378146, intron 3 of 29)	intron (NM_001378146, intron 3 of 29)	10365	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
42080	chr11	67497101	67497550	+	0	NA	exon (NM_004910, exon 14 of 24)	exon (NM_004910, exon 14 of 24)	7080	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
236007	chrX	54805821	54806080	+	0	NA	Intergenic	L2|LINE|L2	-1795	NM_177433	10916		NM_014599	ENSG00000102316	MAGED2	11B6|BARTS5|BCG-1|BCG1|HCA10|MAGE-D2	MAGE family member D2	protein-coding
149460	chr21	31667951	31668250	+	0	NA	intron (NM_000454, intron 4 of 4)	intron (NM_000454, intron 4 of 4)	8407	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
156593	chr22	41535371	41535730	+	0	NA	intron (NM_138338, intron 3 of 6)	AluSz6|SINE|Alu	8920	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
116513	chr19	18157951	18158130	+	0	NA	intron (NR_162071, intron 2 of 14)	intron (NR_162071, intron 2 of 14)	4877	NR_162071	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
38958	chr11	47538021	47538280	+	0	NA	intron (NM_001376458, intron 1 of 13)	AluJr4|SINE|Alu	-13446	NM_001376369	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
159790	chr3	16321971	16322730	+	0	NA	intron (NM_015150, intron 9 of 9)	intron (NM_015150, intron 9 of 9)	57138	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
47076	chr12	572351	573200	+	0	NA	intron (NM_016533, intron 1 of 3)	MIRb|SINE|MIR	13711	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
119710	chr19	41136951	41137050	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	22568	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
187352	chr5	141693131	141694130	+	0	NA	Intergenic	Intergenic	-11400	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
51609	chr12	52872801	52873200	+	0	NA	Intergenic	Intergenic	-24006	NM_173352	196374		NM_173352	ENSG00000170423	KRT78	CK-78|K5B|K78|Kb40	keratin 78	protein-coding
55601	chr12	106773751	106775180	+	0	NA	promoter-TSS (NM_001351361)	promoter-TSS (NM_001351361)	-217	NM_001351363	55188		NM_018157	ENSG00000111785	RIC8B	RIC8|hSyn	RIC8 guanine nucleotide exchange factor B	protein-coding
10679	chr1	71078971	71079630	+	0	NA	intron (NM_005455, intron 1 of 10)	intron (NM_005455, intron 1 of 10)	1735	NM_203350	9406		NM_005455	ENSG00000132485	ZRANB2	ZIS|ZIS1|ZIS2|ZNF265	zinc finger RANBP2-type containing 2	protein-coding
74212	chr15	56207771	56208300	+	0	NA	intron (NM_001370561, intron 4 of 11)	L1MC1|LINE|L1	-18103	NM_001368074	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
27893	chr10	41880171	41880400	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	487760	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
80624	chr16	2976451	2977250	+	0	NA	exon (NM_001258451, exon 3 of 9)	exon (NM_001258451, exon 3 of 9)	3596	NM_004203	9088		NM_004203	ENSG00000127564	PKMYT1	MYT1|PPP1R126	protein kinase, membrane associated tyrosine/threonine 1	protein-coding
27922	chr10	41905621	41905950	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	462260	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
209446	chr7	76424471	76424900	+	0	NA	promoter-TSS (NM_001110354)	promoter-TSS (NM_001110354)	-265	NM_001110354	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
77733	chr15	85721851	85722150	+	0	NA	exon (NM_001270546, exon 16 of 29)	exon (NM_001270546, exon 16 of 29)	36725	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
34422	chr10	132406271	132407100	+	0	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	9485	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
205632	chr7	22563201	22564250	+	0	NA	intron (NR_038393, intron 1 of 3)	intron (NR_038393, intron 1 of 3)	388	NR_038393	100506178		NR_038393	ENSG00000232759	STEAP1B-AS1	-	STEAP1B antisense RNA 1	ncRNA
58157	chr12	124940501	124941400	+	0	NA	Intergenic	L2a|LINE|L2	25403	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
175666	chr4	76956371	76956530	+	0	NA	intron (NM_018243, intron 1 of 9)	MLT1I|LTR|ERVL-MaLR	6698	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
141848	chr20	541901	542100	+	0	NA	intron (NM_177559, intron 1 of 13)	intron (NM_177559, intron 1 of 13)	1790	NM_001895	1457		NM_001895	ENSG00000101266	CSNK2A1	CK2A1|CKII|Cka1|Cka2|OCNDS	casein kinase 2 alpha 1	protein-coding
137646	chr2	197419421	197419680	+	0	NA	3' UTR (NM_001308824, exon 4 of 4)	3' UTR (NM_001308824, exon 4 of 4)	15478	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
14194	chr1	122907521	122907600	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1388448	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
237140	chrX	106989071	106989230	+	0	NA	intron (NM_024657, intron 3 of 16)	intron (NM_024657, intron 3 of 16)	11062	NM_001085354	79710		NM_024657	ENSG00000133131	MORC4	ZCW4|ZCWCC2|dJ75H8.2	MORC family CW-type zinc finger 4	protein-coding
219782	chr8	81138951	81139550	+	0	NA	Intergenic	Intergenic	-27182	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
18630	chr1	166488221	166488480	+	0	NA	intron (NR_146890, intron 1 of 2)	intron (NR_146890, intron 1 of 2)	1689	NR_146890	105371590		NR_146890		LINC01675	-	long intergenic non-protein coding RNA 1675	ncRNA
148756	chr21	7926151	7926330	+	0	NA	Intergenic	(ATTCCATTCC)n|Simple_repeat|Simple_repeat	-96608	NM_001330065	102723475		NM_001330065	ENSG00000276289	LOC102723475	KCNE1B	potassium voltage-gated channel subfamily E regulatory subunit 1B	protein-coding
149873	chr21	35519271	35519430	+	0	NA	intron (NR_073512, intron 1 of 2)	MLT2D|LTR|ERVL	61414	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
96500	chr17	40311551	40312250	+	0	NA	intron (NM_000964, intron 1 of 8)	intron (NM_000964, intron 1 of 8)	2720	NM_000964	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
61688	chr13	74040071	74040730	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	93529	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
236750	chrX	78376021	78376280	+	0	NA	Intergenic	LTR47A2|LTR|ERVL	-48459	NM_001282186	10800		NM_006639	ENSG00000173198	CYSLTR1	CYSLT1|CYSLT1R|CYSLTR|HMTMF81	cysteinyl leukotriene receptor 1	protein-coding
220414	chr8	100273751	100274050	+	0	NA	intron (NM_183419, intron 3 of 9)	AluSx1|SINE|Alu	28293	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
194790	chr6	34222201	34222400	+	0	NA	Intergenic	AluSz|SINE|Alu	-14573	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
229211	chr9	114888851	114889350	+	0	NA	Intergenic	L1M1|LINE|L1	41491	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
20760	chr1	200999251	200999350	+	0	NA	intron (NM_017596, intron 13 of 33)	intron (NM_017596, intron 13 of 33)	24414	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
97926	chr17	45151421	45152680	+	0	NA	TTS (NM_006460)	TTS (NM_006460)	3575	NM_006460	10614		NM_006460	ENSG00000186834	HEXIM1	CLP1|EDG1|HIS1|MAQ1	HEXIM P-TEFb complex subunit 1	protein-coding
7986	chr1	37931201	37932580	+	0	NA	promoter-TSS (NR_158631)	promoter-TSS (NR_158631)	-99	NR_158631	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
176065	chr4	82462401	82463180	+	0	NA	Intergenic	Intergenic	32200	NM_001292017	58478		NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145|mtnC	enolase-phosphatase 1	protein-coding
53055	chr12	57628751	57629150	+	0	NA	TTS (NM_001276469)	TTS (NM_001276469)	3729	NM_001276468	2583		NM_001478	ENSG00000135454	B4GALNT1	GALGT|GALNACT|GalNAc-T|SPG26	beta-1,4-N-acetyl-galactosaminyltransferase 1	protein-coding
36305	chr11	3840161	3842530	+	0	NA	promoter-TSS (NM_001665)	promoter-TSS (NM_001665)	-386	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
234373	chrX	15760201	15760600	+	0	NA	intron (NR_160544, intron 5 of 11)	intron (NR_160544, intron 5 of 11)	22130	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
24119	chr1	235651821	235652230	+	0	NA	Intergenic	AluSc|SINE|Alu	-1271	NM_001098721	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
52768	chr12	56677971	56678430	+	0	NA	intron (NM_001282601, intron 1 of 6)	AluSx1|SINE|Alu	10084	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
214321	chr7	149280021	149280730	+	0	NA	intron (NR_144367, intron 6 of 6)	intron (NR_144367, intron 6 of 6)	-4906	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
173141	chr4	6657651	6657950	+	0	NA	Intergenic	CpG	16081	NR_134665	105374366		NR_134664	ENSG00000251580	LINC02482	-	long intergenic non-protein coding RNA 2482	ncRNA
28578	chr10	51074021	51074650	+	0	NA	promoter-TSS (NM_001374782)	promoter-TSS (NM_001374782)	-152	NM_001374782	5592		NM_006258	ENSG00000185532	PRKG1	AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha	protein kinase cGMP-dependent 1	protein-coding
137990	chr2	201236301	201237080	+	0	NA	intron (NM_033355, intron 2 of 9)	AluJb|SINE|Alu	3227	NM_033358	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
212541	chr7	128855451	128855750	+	0	NA	intron (NM_001458, intron 43 of 47)	intron (NM_001458, intron 43 of 47)	7026	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
207858	chr7	50358221	50359000	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	39562	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
52539	chr12	56126001	56126930	+	0	NA	3' UTR (NM_001303125, exon 3 of 3)	3' UTR (NM_001303125, exon 3 of 3)	-1737	NM_001184796	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
102040	chr17	74863721	74864080	+	0	NA	non-coding (NR_047576, exon 10 of 12)	non-coding (NR_047576, exon 10 of 12)	-3057	NM_001278553	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
143869	chr20	32547371	32547730	+	0	NA	intron (NM_001256798, intron 1 of 10)	AluJb|SINE|Alu	37591	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
43013	chr11	73985871	73986230	+	0	NA	Intergenic	AluSc|SINE|Alu	-2848	NM_001381944	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
71366	chr14	105489101	105490200	+	0	NA	promoter-TSS (NM_001198983)	promoter-TSS (NM_001198983)	-205	NM_001198983	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
20795	chr1	201118551	201118650	+	0	NA	Intergenic	Intergenic	-3228	NM_001270601	647219		NM_001270601	ENSG00000232237	ASCL5	ASH-5|AmeloD|bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding
217412	chr8	28375171	28376450	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	10650	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
100873	chr17	64323851	64324450	+	0	NA	intron (NM_000442, intron 15 of 15)	intron (NM_000442, intron 15 of 15)	-60890	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
35162	chr11	764901	765730	+	0	NA	TTS (NM_006755)	TTS (NM_006755)	12172	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
194461	chr6	33183071	33183880	+	0	NA	intron (NM_080679, intron 5 of 62).6	intron (NM_080679, intron 5 of 62).6	8992	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
189170	chr5	171401821	171402080	+	0	NA	intron (NM_002520, intron 8 of 10)	MER5B|DNA|hAT-Charlie	14101	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
70835	chr14	103637821	103638080	+	0	NA	intron (NM_001130107, intron 1 of 15)	AluJb|SINE|Alu	8762	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
13940	chr1	120293871	120294280	+	0	NA	Intergenic	L1PB1|LINE|L1	-117555	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
164699	chr3	67661801	67662000	+	0	NA	intron (NR_109992, intron 1 of 6)	AluJr|SINE|Alu	7203	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
155824	chr22	39351621	39352750	+	0	NA	intron (NM_145731, intron 1 of 3)	L3|LINE|CR1	2194	NM_004711	9145		NM_004711	ENSG00000100321	SYNGR1	-	synaptogyrin 1	protein-coding
74724	chr15	63187221	63187480	+	0	NA	Intergenic	AluY|SINE|Alu	-2256	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
143735	chr20	32336901	32337250	+	0	NA	Intergenic	Intergenic	-21256	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
32050	chr10	101047771	101048430	+	0	NA	Intergenic	CpG	-13889	NR_135067	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
144255	chr20	34530471	34530630	+	0	NA	intron (NR_168134, intron 3 of 4)	MIRb|SINE|MIR	14128	NM_001382367	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
104077	chr17	80242451	80242750	+	0	NA	intron (NM_001166348, intron 9 of 16)	intron (NM_001166348, intron 9 of 16)	-18252	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
234079	chrX	8971121	8971450	+	0	NA	Intergenic	Intergenic	62842	NM_205849	171483		NM_173696	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9 member B	protein-coding
156173	chr22	40220201	40220400	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	42375	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
48988	chr12	13165221	13165980	+	0	NA	Intergenic	Intergenic	-31126	NM_001423	2012		NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
40270	chr11	63815551	63815650	+	0	NA	intron (NM_138471, intron 1 of 5)	L2a|LINE|L2	2144	NM_138471	144097		NM_138471	ENSG00000168005	SPINDOC	C11orf84|SPIN-DOC	spindlin interactor and repressor of chromatin binding	protein-coding
167485	chr3	129163921	129164530	+	0	NA	Intergenic	AluSx|SINE|Alu	-2995	NM_001204890	100534599		NM_001204890	ENSG00000261796	ISY1-RAB43	ISY1	ISY1-RAB43 readthrough	protein-coding
84077	chr16	29603151	29603930	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	-4275	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
44809	chr11	113859701	113860100	+	0	NA	intron (NM_020886, intron 1 of 24)	intron (NM_020886, intron 1 of 24)	15672	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
2042	chr1	7770371	7772180	+	0	NA	promoter-TSS (NM_004781)	promoter-TSS (NM_004781)	-21	NM_004781	9341		NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding
124722	chr2	3780721	3781000	+	0	NA	intron (NM_001287444, intron 9 of 10)	intron (NM_001287444, intron 9 of 10)	74018	NM_001365580	728597		NM_001287444	ENSG00000214866	DCDC2C	-	doublecortin domain containing 2C	protein-coding
232220	chr9	134371021	134371580	+	0	NA	intron (NM_002957, intron 1 of 9)	MIRc|SINE|MIR	-7995	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
39478	chr11	61002271	61003230	+	0	NA	intron (NM_006725, intron 1 of 12)	MSTD|LTR|ERVL-MaLR	31070	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
42637	chr11	72290801	72291150	+	0	NA	3' UTR (NM_001258392, exon 16 of 16)	3' UTR (NM_001258392, exon 16 of 16)	-46799	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
125519	chr2	12735101	12735500	+	0	NA	intron (NM_021643, intron 2 of 2)	intron (NM_021643, intron 2 of 2)	-2067	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
187250	chr5	141412921	141413780	+	0	NA	exon (NM_032090, exon 1 of 1)	exon (NM_032090, exon 1 of 1)	174	NM_032090	56106		NM_018913	ENSG00000253846	PCDHGA10	PCDH-GAMMA-A10	protocadherin gamma subfamily A, 10	protein-coding
33798	chr10	123146001	123146300	+	0	NA	Intergenic	Intergenic	-1972	NM_005519	3167		NM_005519	ENSG00000188816	HMX2	H6L|Nkx5-2	H6 family homeobox 2	protein-coding
118620	chr19	36972921	36974000	+	0	NA	intron (NM_001204838, intron 6 of 9)	CpG	57128	NM_198539	374900		NM_198539	ENSG00000198453	ZNF568	ZFP568	zinc finger protein 568	protein-coding
25558	chr10	7501101	7501500	+	0	NA	Intergenic	Intergenic	-89814	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
36456	chr11	5699471	5699830	+	0	NA	intron (NM_006074, intron 4 of 7)	L1MB7|LINE|L1	9860	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
167618	chr3	129580921	129581380	+	0	NA	intron (NM_015103, intron 8 of 35)	intron (NM_015103, intron 8 of 35)	25526	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
153184	chr22	23841071	23841430	+	0	NA	intron (NR_003082, intron 4 of 4)	L2a|LINE|L2	-2244	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
48239	chr12	8245271	8245630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2504	NR_024254	653113		NR_024254		FAM86FP	-	family with sequence similarity 86, member A pseudogene	pseudo
180082	chr5	1110251	1110830	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	1523	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
37253	chr11	14639571	14640400	+	0	NA	intron (NM_148976, intron 1 of 10)	L2c|LINE|L2	3649	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
218126	chr8	41575701	41575900	+	0	NA	intron (NR_125824, intron 1 of 2)	intron (NR_125824, intron 1 of 2)	-2400	NM_178819	137964		NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
134972	chr2	152177301	152177500	+	0	NA	Intergenic	Intergenic	-1637	NM_005843	10254		NM_005843	ENSG00000115145	STAM2	Hbp|STAM2A|STAM2B	signal transducing adaptor molecule 2	protein-coding
163025	chr3	49806121	49806930	+	0	NA	promoter-TSS (NR_049825)	promoter-TSS (NR_049825)	-280	NR_049825	100847079		NR_049825	ENSG00000283726	MIR5193	mir-5193	microRNA 5193	ncRNA
226	chr1	844021	844900	+	0	NA	TTS (NR_047526)	TTS (NR_047526)	16662	NR_047525	643837		NR_015368	ENSG00000228794	LINC01128	-	long intergenic non-protein coding RNA 1128	ncRNA
56594	chr12	118051021	118051730	+	0	NA	intron (NM_001278557, intron 2 of 8)	L1MB8|LINE|L1	9804	NM_018639	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
57458	chr12	121921771	121922130	+	0	NA	intron (NM_144668, intron 2 of 21)	AluSx1|SINE|Alu	3358	NM_001178003	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
169715	chr3	172134151	172135100	+	0	NA	intron (NM_022763, intron 3 of 25)	intron (NM_022763, intron 3 of 25)	94094	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
172400	chr4	1786771	1787580	+	0	NA	Intergenic	Intergenic	-6118	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
41120	chr11	65560371	65560530	+	0	NA	Intergenic	Intergenic	-2091	NM_001130144	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
177388	chr4	112176671	112176930	+	0	NA	intron (NM_152400, intron 1 of 1)	intron (NM_152400, intron 1 of 1)	31346	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
92859	chr17	16363471	16364200	+	0	NA	Intergenic	Intergenic	-10366	NM_181716	201161		NM_181716	ENSG00000166582	CENPV	3110013H01Rik|CENP-V|PRR6|p30	centromere protein V	protein-coding
93339	chr17	18213521	18214050	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-11850	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
80977	chr16	3957601	3958000	+	0	NA	Intergenic	Intergenic	-7356	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
65716	chr14	52917551	52917930	+	0	NA	intron (NM_001134999, intron 3 of 15)	HAL1ME|LINE|L1	33310	NM_006832	10979		NM_006832	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	FERM domain containing kindlin 2	protein-coding
151905	chr22	18952701	18953300	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-16447	NM_001195226	5625		NM_016335	ENSG00000100033	PRODH	HSPOX2|PIG6|POX|PRODH1|PRODH2|TP53I6	proline dehydrogenase 1	protein-coding
129381	chr2	68799951	68800450	+	0	NA	intron (NM_001364819, intron 4 of 10)	intron (NM_001364819, intron 4 of 10)	25290	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
59273	chr13	24220051	24220700	+	0	NA	intron (NM_153023, intron 1 of 11)	intron (NM_153023, intron 1 of 11)	34064	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
197772	chr6	87588571	87588730	+	0	NA	intron (NR_146746, intron 1 of 20)	AluJr4|SINE|Alu	1337	NM_020320	57038		NM_014107	ENSG00000146282	RARS2	ArgRS|DALRD2|PCH6|PRO1992|RARSL	arginyl-tRNA synthetase 2, mitochondrial	protein-coding
120430	chr19	44073071	44073230	+	0	NA	intron (NM_001037813, intron 1 of 4)	MIR|SINE|MIR	991	NM_001037813	342909		NM_001037813	ENSG00000186026	ZNF284	ZNF284L	zinc finger protein 284	protein-coding
186871	chr5	139510751	139511050	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-28142	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
67993	chr14	74942701	74943000	+	0	NA	intron (NM_001207012, intron 5 of 5)	intron (NM_001207012, intron 5 of 5)	12914	NM_001293643	5228		NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
175698	chr4	77073471	77073730	+	0	NA	intron (NM_006835, intron 1 of 6)	intron (NM_006835, intron 1 of 6)	1310	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
67822	chr14	73829701	73830530	+	0	NA	promoter-TSS (NR_135238)	promoter-TSS (NR_135238)	20	NR_135238	100506498		NR_135238	ENSG00000258586	LINC02274	-	long intergenic non-protein coding RNA 2274	ncRNA
59086	chr13	21062601	21063000	+	0	NA	Intergenic	Intergenic	-1214	NM_014572	26524		NM_014572	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
16962	chr1	155940301	155941600	+	0	NA	promoter-TSS (NM_181885)	promoter-TSS (NM_181885)	-688	NM_181885	339403		NM_181885	ENSG00000173080	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin family peptide/INSL5 receptor 4	protein-coding
55177	chr12	100269321	100269780	+	0	NA	intron (NM_017988, intron 1 of 17)	MIRb|SINE|MIR	2166	NM_001330253	55681		NM_017988	ENSG00000136021	SCYL2	AMC4|AMCNACC|CVAK104	SCY1 like pseudokinase 2	protein-coding
204274	chr7	2642901	2644050	+	0	NA	intron (NM_025250, intron 1 of 13)	L2a|LINE|L2	11489	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
3702	chr1	16573751	16574050	+	0	NA	intron (NM_017940, intron 21 of 28)	intron (NM_017940, intron 21 of 28)	24986	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
122891	chr19	50518271	50518800	+	0	NA	exon (NM_001080457, exon 3 of 3)	exon (NM_001080457, exon 3 of 3)	-3851	NM_001024656	554235		NM_001024656	ENSG00000204653	ASPDH	-	aspartate dehydrogenase domain containing	protein-coding
108892	chr18	79417401	79418400	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	17601	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
158458	chr22	50641871	50642030	+	0	NA	Intergenic	Intergenic	-13798	NM_001085427	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
151655	chr22	17007871	17008030	+	0	NA	exon (NM_001366857, exon 1 of 8)	exon (NM_001366857, exon 1 of 8)	272	NM_001037814	128954		NM_001037814	ENSG00000215568	GAB4	-	GRB2 associated binding protein family member 4	protein-coding
54346	chr12	89688001	89688580	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	20548	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
30875	chr10	86835301	86835530	+	0	NA	intron (NM_004329, intron 1 of 12)	AluSg|SINE|Alu	78796	NM_004329	657		NM_004329	ENSG00000107779	BMPR1A	10q23del|ACVRLK3|ALK-3|ALK3|BMPR-1A|CD292|SKR5	bone morphogenetic protein receptor type 1A	protein-coding
57810	chr12	123139321	123139580	+	0	NA	intron (NM_001300801, intron 1 of 25)	AluY|SINE|Alu	11640	NM_020845	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
55379	chr12	104303271	104304580	+	0	NA	5' UTR (NM_001008394, exon 1 of 1)	5' UTR (NM_001008394, exon 1 of 1)	186	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
51371	chr12	51846751	51847780	+	0	NA	promoter-TSS (NR_135803)	promoter-TSS (NR_135803)	-958	NR_135803	105369971		NR_135803	ENSG00000259887	FIGNL2-DT	-	FIGNL2 divergent transcript	ncRNA
192572	chr6	25757151	25757250	+	0	NA	intron (NM_001286121, intron 1 of 12)	intron (NM_001286121, intron 1 of 12)	2458	NM_005495	10050		NM_005495	ENSG00000146039	SLC17A4	KAIA2138	solute carrier family 17 member 4	protein-coding
59753	chr13	30051871	30052430	+	0	NA	Intergenic	LTR36|LTR|ERV1	56725	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
129887	chr2	73163371	73164180	+	0	NA	Intergenic	Intergenic	-38799	NM_001134462	344022		NM_001134462	ENSG00000214513	NOTO	-	notochord homeobox	protein-coding
51902	chr12	53621421	53621980	+	0	NA	intron (NR_159377, intron 1 of 14)	AluSz|SINE|Alu	4290	NM_001366562	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
194338	chr6	32858671	32858830	+	0	NA	intron (NM_002800, intron 5 of 5)	intron (NM_002800, intron 5 of 5)	4558	NM_002800	5698		NM_002800	ENSG00000240065	PSMB9	LMP2|PRAAS3|PRAAS6|PSMB6i|RING12|beta1i	proteasome 20S subunit beta 9	protein-coding
19316	chr1	173331151	173331450	+	0	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	-123969	NM_003326	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
5615	chr1	26145001	26145700	+	0	NA	Intergenic	Intergenic	-13729	NM_024869	79927		NM_024869	ENSG00000197245	FAM110D	GRRP1	family with sequence similarity 110 member D	protein-coding
86836	chr16	67909521	67909600	+	0	NA	exon (NM_006742, exon 2 of 3)	exon (NM_006742, exon 2 of 3)	16306	NM_006742	5681		NM_006742	ENSG00000159792	PSKH1	-	protein serine kinase H1	protein-coding
156720	chr22	41788301	41788900	+	0	NA	intron (NM_152513, intron 26 of 30)	AluSx|SINE|Alu	-12079	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
110344	chr19	1879921	1880400	+	0	NA	intron (NM_001130111, intron 2 of 4)	intron (NM_001130111, intron 2 of 4)	5336	NM_001130111	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
159523	chr3	14425801	14426550	+	0	NA	intron (NM_001134367, intron 2 of 14)	MIR3|SINE|MIR	23569	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
226565	chr9	72443321	72444200	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	-77848	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
122397	chr19	49431521	49431850	+	0	NA	intron (NM_020309, intron 9 of 11)	intron (NM_020309, intron 9 of 11)	6297	NM_001195256	100507003		NM_001195256	ENSG00000261949	GFY	Goofy	golgi associated olfactory signaling regulator	protein-coding
146721	chr20	50594371	50595930	+	0	NA	intron (NM_080829, intron 16 of 21)	MIR3|SINE|MIR	9364	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
236882	chrX	82134321	82134680	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	932398	NM_003022	6451		NM_003022	ENSG00000131171	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate rich protein like	protein-coding
49715	chr12	31238751	31239080	+	0	NA	Intergenic	LTR39-int|LTR|ERV1	-37680	NR_153414	144203		NM_173498	ENSG00000177359	OVOS2	-	alpha-2-macroglobulin like 1 pseudogene	pseudo
151532	chr21	46471551	46471850	+	0	NA	intron (NM_206891, intron 1 of 19)	intron (NM_206891, intron 1 of 19)	9229	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
93137	chr17	17735801	17736000	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	30402	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
104226	chr17	80667051	80667350	+	0	NA	intron (NM_020761, intron 3 of 33)	intron (NM_020761, intron 3 of 33)	122362	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
203463	chr7	467221	468030	+	0	NA	Intergenic	Intergenic	-35824	NR_165236	112267991		NR_165236		LOC112267991	-	uncharacterized LOC112267991	ncRNA
63978	chr14	22226421	22226900	+	0	NA	Intergenic	Intergenic	206093	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
219850	chr8	82117551	82117670	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-275324	NM_022133	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
186377	chr5	134926901	134927700	+	0	NA	intron (NM_032151, intron 2 of 3)	intron (NM_032151, intron 2 of 3)	22169	NM_032151	84105		NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
1181	chr1	2230651	2231500	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	2756	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
17444	chr1	156682821	156683080	+	0	NA	Intergenic	AluJb|SINE|Alu	-5543	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
49674	chr12	29519671	29519850	+	0	NA	intron (NM_175861, intron 12 of 17)	intron (NM_175861, intron 12 of 17)	-20067	NM_001353179	341350		NM_183378	ENSG00000187950	OVCH1	OVCH	ovochymase 1	protein-coding
183319	chr5	76712401	76712800	+	0	NA	non-coding (NR_028375, exon 1 of 1)	non-coding (NR_028375, exon 1 of 1)	197	NR_028375	100302746		NR_028375		NCRUPAR	NCRNA00193|ncR-uPAR	non-protein coding RNA, upstream of F2R/PAR1	ncRNA
214545	chr7	150524021	150524530	+	0	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	9403	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
127342	chr2	39117121	39117380	+	0	NA	intron (NM_001382394, intron 1 of 22)	AluSq4|SINE|Alu	3801	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
226472	chr9	71743321	71743780	+	0	NA	intron (NM_001135820, intron 4 of 22)	L2c|LINE|L2	24963	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
40750	chr11	64836701	64837000	+	0	NA	intron (NM_017525, intron 10 of 36)	intron (NM_017525, intron 10 of 36)	7803	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
192465	chr6	24922551	24923250	+	0	NA	intron (NM_001286446, intron 1 of 13)	L1MB2|LINE|L1	-11852	NM_014722	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
87166	chr16	69326921	69327630	+	0	NA	TTS (NM_013245)	TTS (NM_013245)	3313	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
207677	chr7	45123101	45123980	+	0	NA	Intergenic	Intergenic	-11793	NM_199122	9238		NM_004749	ENSG00000136270	TBRG4	CPR2|FASTKD4	transforming growth factor beta regulator 4	protein-coding
137679	chr2	197470951	197471650	+	0	NA	intron (NM_001320818, intron 3 of 3)	AluJb|SINE|Alu	15603	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
88082	chr16	81487251	81487750	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-7854	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
209479	chr7	76588601	76589000	+	0	NA	intron (NR_029411, intron 2 of 2)	L2a|LINE|L2	38503	NM_012230	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
118174	chr19	35038851	35039330	+	0	NA	intron (NM_001321605, intron 3 of 5)	intron (NM_001321605, intron 3 of 5)	-1416	NM_182983	3249		NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
37773	chr11	32173471	32173700	+	0	NA	Intergenic	Intergenic	-29673	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
139477	chr2	224284151	224284530	+	0	NA	Intergenic	Intergenic	117654	NM_024785	79843		NM_024785	ENSG00000124019	FAM124B	-	family with sequence similarity 124 member B	protein-coding
210023	chr7	94001351	94001450	+	0	NA	intron (NM_001317739, intron 1 of 4)	intron (NM_001317739, intron 1 of 4)	2955	NR_133909	10282		NM_005868	ENSG00000105829	BET1	HBET1|MDRP	Bet1 golgi vesicular membrane trafficking protein	protein-coding
166031	chr3	108546051	108546900	+	0	NA	Intergenic	Intergenic	-17153	NM_014981	22989		NM_014981	ENSG00000144821	MYH15	-	myosin heavy chain 15	protein-coding
166304	chr3	112642851	112643350	+	0	NA	Intergenic	Intergenic	-1957	NM_199511	151887		NM_178274	ENSG00000091986	CCDC80	CL2|DRO1|LINC01279|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
63741	chr14	21223801	21224200	+	0	NA	intron (NM_001077443, intron 4 of 7)	intron (NM_001077443, intron 4 of 7)	-17100	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
72946	chr15	40448801	40449000	+	0	NA	intron (NR_125372, intron 1 of 4)	AluSp|SINE|Alu	7947	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
201121	chr6	142879471	142879630	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	65626	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
26885	chr10	26217501	26217900	+	0	NA	intron (NM_000818, intron 2 of 16)	CpG-2744	926	NM_001134366	2572		NM_000818	ENSG00000136750	GAD2	GAD65	glutamate decarboxylase 2	protein-coding
164970	chr3	71282101	71282300	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-7558	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
98035	chr17	45425471	45425630	+	0	NA	promoter-TSS (NM_199282).2	promoter-TSS (NM_199282).2	83	NR_169604	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
212325	chr7	127383021	127383650	+	0	NA	intron (NM_176814, intron 3 of 5)	intron (NM_176814, intron 3 of 5)	9373	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
230071	chr9	127444851	127445430	+	0	NA	exon (NM_007135, exon 5 of 5)	exon (NM_007135, exon 5 of 5)	3497	NR_002449	26783		NR_002449	ENSG00000201302	SNORA65	RNU65|U65	small nucleolar RNA, H/ACA box 65	snoRNA
60334	chr13	40705871	40706030	+	0	NA	Intergenic	L1MC4a|LINE|L1	21937	NR_031723	100313896		NR_031723		MIR320D1	MIR320D-1|MIRN320D1|mir-320d-1	microRNA 320d-1	ncRNA
10168	chr1	61079671	61080430	+	0	NA	intron (NM_001145511, intron 1 of 10)	intron (NM_001145511, intron 1 of 10)	-1689	NM_001145512	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
102454	chr17	75705651	75706400	+	0	NA	exon (NM_013260, exon 10 of 11)	exon (NM_013260, exon 10 of 11)	-15434	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
118402	chr19	35748001	35749050	+	0	NA	promoter-TSS (NM_019104)	promoter-TSS (NM_019104)	-51	NM_019104	55957		NM_019104	ENSG00000267796	LIN37	F25965|ZK418.4|lin-37	lin-37 DREAM MuvB core complex component	protein-coding
152250	chr22	20212871	20213750	+	0	NA	Intergenic	Intergenic	6978	NR_026919	150197		NM_152508	ENSG00000236499	LINC00896	-	long intergenic non-protein coding RNA 896	ncRNA
214827	chr7	151247021	151247550	+	0	NA	intron (NM_001003802, intron 2 of 13)	intron (NM_001003802, intron 2 of 13)	1409	NM_001003801	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
162947	chr3	49539501	49540700	+	0	NA	Intergenic	Intergenic	14266	NR_038866	100132677		NR_038866	ENSG00000226913	BSN-DT	BSN-AS2	BSN divergent transcript	ncRNA
10400	chr1	65070101	65070300	+	0	NA	Intergenic	Intergenic	-2454	NM_001321852	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
91267	chr17	4017471	4017830	+	0	NA	exon (NM_015113, exon 48 of 55)	exon (NM_015113, exon 48 of 55)	40547	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
108725	chr18	77088201	77088400	+	0	NA	intron (NM_001025100, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	44483	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
45739	chr11	119123121	119123650	+	0	NA	intron (NM_001351971, intron 2 of 12)	intron (NM_001351971, intron 2 of 12)	1805	NM_001351965	25988		NM_015517	ENSG00000172273	HINFP	HiNF-P|MIZF|ZNF743	histone H4 transcription factor	protein-coding
41731	chr11	66666721	66667180	+	0	NA	3' UTR (NM_001198844, exon 3 of 3)	3' UTR (NM_001198844, exon 3 of 3)	10937	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
196281	chr6	42978471	42980300	+	0	NA	promoter-TSS (NM_001316313)	promoter-TSS (NM_001316313)	-204	NR_133009	5190		NM_000287	ENSG00000124587	PEX6	HMLR2|PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
160691	chr3	32302301	32302500	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	63720	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
190469	chr5	180089921	180091050	+	0	NA	Intergenic	CpG	-18726	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
66985	chr14	66624371	66624600	+	0	NA	intron (NM_020806, intron 1 of 22)	HERVL40-int|LTR|ERVL	116338	NM_001377516	10243		NM_020806	ENSG00000171723	GPHN	GEPH|GPH|GPHRYN|HKPX1|MOCODC	gephyrin	protein-coding
195737	chr6	39313871	39314030	+	0	NA	TTS (NM_001135105)	TTS (NM_001135105)	469	NM_031460	89822		NM_031460	ENSG00000124780	KCNK17	K2p17.1|TALK-2|TALK2|TASK-4|TASK4	potassium two pore domain channel subfamily K member 17	protein-coding
235854	chrX	50204371	50205300	+	0	NA	promoter-TSS (NM_033031)	promoter-TSS (NM_033031)	70	NM_033031	85417		NM_033031	ENSG00000147082	CCNB3	CYCB3	cyclin B3	protein-coding
24317	chr1	237386501	237386700	+	0	NA	intron (NM_001035, intron 8 of 104)	intron (NM_001035, intron 8 of 104)	-84519	NR_039626	100616141		NR_039626	ENSG00000266262	MIR4428	-	microRNA 4428	ncRNA
175283	chr4	67541371	67542130	+	0	NA	intron (NR_155754, intron 2 of 18)	L1MD2|LINE|L1	3753	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
89220	chr16	88624371	88624530	+	0	NA	intron (NM_144604, intron 11 of 17)	intron (NM_144604, intron 11 of 17)	-14122	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
226104	chr9	62844801	62845230	+	0	NA	non-coding (NR_024496, exon 2 of 2)	non-coding (NR_024496, exon 2 of 2)	4370	NR_135010	442421		NR_024496		PTGER4P2-CDK2AP2P2	-	PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene	pseudo
145574	chr20	44489871	44490300	+	0	NA	3' UTR (NM_024331, exon 6 of 6)	3' UTR (NM_024331, exon 6 of 6)	14211	NM_001261839	79183		NM_024331	ENSG00000124120	TTPAL	C20orf121	alpha tocopherol transfer protein like	protein-coding
216151	chr8	11558301	11559450	+	0	NA	intron (NM_001715, intron 10 of 12)	(CCTCCCA)n|Simple_repeat|Simple_repeat	-17660	NR_040035	83655		NM_054029	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
10861	chr1	77976401	77977280	+	0	NA	intron (NR_146539, intron 1 of 22)	intron (NR_146539, intron 1 of 22)	2232	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
178208	chr4	142557121	142557830	+	0	NA	intron (NM_003866, intron 2 of 26)	MIR3|SINE|MIR	3280	NM_001385338	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
189624	chr5	176028901	176029800	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	32705	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
127193	chr2	38534121	38534580	+	0	NA	Intergenic	Intergenic	-18610	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
175912	chr4	80186551	80186850	+	0	NA	intron (NM_020226, intron 1 of 9)	intron (NM_020226, intron 1 of 9)	1430	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
210329	chr7	99496271	99496650	+	0	NA	intron (NM_001345967, intron 1 of 1)	L2a|LINE|L2	3821	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
217741	chr8	30727071	30728300	+	0	NA	exon (NM_000637, exon 1 of 13)	exon (NM_000637, exon 1 of 13)	161	NM_000637	2936		NM_000637	ENSG00000104687	GSR	GR|GSRD|HEL-75|HEL-S-122m	glutathione-disulfide reductase	protein-coding
142251	chr20	3161171	3161330	+	0	NA	Intergenic	Intergenic	-1385	NM_001267584	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
3739	chr1	16636151	16636450	+	0	NA	Intergenic	AluSx|SINE|Alu	-5394	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
45568	chr11	118829451	118829750	+	0	NA	Intergenic	AluSx3|SINE|Alu	-38436	NM_004397	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
227943	chr9	94554301	94554750	+	0	NA	promoter-TSS (NR_121566)	promoter-TSS (NR_121566)	-520	NR_121568	101928099		NR_121566	ENSG00000231806	PCAT7	PCAN-R2	prostate cancer associated transcript 7	ncRNA
181732	chr5	50690821	50691080	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	23536	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
60653	chr13	42574601	42575430	+	0	NA	intron (NM_003701, intron 1 of 4)	intron (NM_003701, intron 1 of 4)	863	NM_003701	8600		NM_003701	ENSG00000120659	TNFSF11	CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf	TNF superfamily member 11	protein-coding
205555	chr7	20330451	20331000	+	0	NA	promoter-TSS (NM_002214)	promoter-TSS (NM_002214)	-175	NM_002214	3696		NM_002214	ENSG00000105855	ITGB8	-	integrin subunit beta 8	protein-coding
196000	chr6	42001451	42001950	+	0	NA	intron (NM_001136017, intron 1 of 4)	FLAM_C|SINE|Alu	47194	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
23878	chr1	234851651	234851950	+	0	NA	Intergenic	Intergenic	-91744	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
79438	chr16	707271	708030	+	0	NA	Intergenic	Intergenic	-1849	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
78691	chr15	95996651	95996750	+	0	NA	Intergenic	Intergenic	131141	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
231625	chr9	131584971	131586300	+	0	NA	intron (NM_001377935, intron 22 of 26)	intron (NM_001377935, intron 22 of 26)	40112	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
124895	chr2	8438371	8438880	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	-110206	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
238428	chrX	150879871	150880100	+	0	NA	intron (NM_134445, intron 1 of 7)	L1MB7|LINE|L1	18683	NM_031462	83692		NM_031462	ENSG00000102181	CD99L2	CD99B|MIC2L1	CD99 molecule like 2	protein-coding
85605	chr16	53545201	53545850	+	0	NA	Intergenic	Intergenic	-42221	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
49927	chr12	39682851	39683750	+	0	NA	intron (NR_135051, intron 7 of 18)	intron (NR_135051, intron 7 of 18)	57117	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
9756	chr1	53325521	53326800	+	0	NA	intron (NM_017522, intron 2 of 15)	CpG	1910	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
172622	chr4	2518321	2519030	+	0	NA	Intergenic	AluSg4|SINE|Alu	-16700	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
167992	chr3	136746601	136746800	+	0	NA	intron (NM_005862, intron 1 of 33)	AluSx|SINE|Alu	5678	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
183013	chr5	72859251	72859350	+	0	NA	intron (NM_002270, intron 4 of 24)	MER20|DNA|hAT-Charlie	11161	NM_001364293	3842		NM_002270	ENSG00000083312	TNPO1	IPO2|KPNB2|MIP|MIP1|TRN	transportin 1	protein-coding
58359	chr12	131660871	131661300	+	0	NA	Intergenic	5S|rRNA|rRNA	-12964	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
234046	chrX	4240121	4241130	+	0	NA	Intergenic	Intergenic	-319883	NR_146578	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
68216	chr14	76919021	76919280	+	0	NA	Intergenic	Intergenic	-40488	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
189723	chr5	176536351	176537500	+	0	NA	intron (NM_014901, intron 1 of 10)	CpG	477	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
186520	chr5	138356071	138356600	+	0	NA	intron (NM_016604, intron 1 of 23)	L1ME3G|LINE|L1	3650	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
129506	chr2	69636301	69636930	+	0	NA	intron (NM_001371577, intron 2 of 14)	MER3|DNA|hAT-Charlie	7123	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
23171	chr1	226763901	226764200	+	0	NA	Intergenic	Intergenic	-24875	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
1455	chr1	2659171	2659650	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-26394	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
180734	chr5	31853901	31854500	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	81959	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
155108	chr22	37610721	37610980	+	0	NA	intron (NM_001172688, intron 1 of 17)	intron (NM_001172688, intron 1 of 17)	1810	NM_001172688	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
235030	chrX	40060921	40061180	+	0	NA	intron (NM_001123384, intron 9 of 13)	intron (NM_001123384, intron 9 of 13)	36908	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
164858	chr3	71060401	71061200	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	4124	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
82654	chr16	19389271	19389430	+	0	NA	Intergenic	Intergenic	-21189	NM_001308161	79838		NM_024780	ENSG00000103534	TMC5	-	transmembrane channel like 5	protein-coding
16495	chr1	154791001	154792600	+	0	NA	intron (NM_170782, intron 2 of 7)	intron (NM_170782, intron 2 of 7)	68076	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
158183	chr22	50224971	50226000	+	0	NA	intron (NM_020461, intron 10 of 24)	intron (NM_020461, intron 10 of 24)	19538	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
16801	chr1	155555071	155555430	+	0	NA	intron (NM_018489, intron 1 of 27)	AluSz|SINE|Alu	-6792	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
207699	chr7	45917621	45918100	+	0	NA	intron (NM_000598, intron 1 of 4)	MER5A|DNA|hAT-Charlie	3412	NM_001013398	3486		NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP-3|IBP3|IGFBP-3	insulin like growth factor binding protein 3	protein-coding
12066	chr1	98813771	98813930	+	0	NA	Intergenic	Intergenic	152129	NR_033716	51375		NM_015976	ENSG00000162627	SNX7	-	sorting nexin 7	protein-coding
137697	chr2	197491271	197491630	+	0	NA	intron (NM_199440, intron 7 of 11)	AluY|SINE|Alu	-4547	NR_132788	106635540		NR_132788		SNORA105B	-	small nucleolar RNA, H/ACA box 105B	snoRNA
42131	chr11	67629801	67631830	+	0	NA	promoter-TSS (NM_001243750)	promoter-TSS (NM_001243750)	-878	NM_001243750	254552		NM_181843	ENSG00000167799	NUDT8	-	nudix hydrolase 8	protein-coding
111193	chr19	3439301	3439500	+	0	NA	intron (NM_205843, intron 6 of 10)	AluSq2|SINE|Alu	41125	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
16108	chr1	153632501	153632850	+	0	NA	TTS (NM_006271)	TTS (NM_006271)	-1307	NM_001244664	26097		NM_015607	ENSG00000160679	CHTOP	C10orf77|C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704	chromatin target of PRMT1	protein-coding
151113	chr21	44872621	44872990	+	0	NA	intron (NM_004339, intron 1 of 5)	CpG	885	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
197549	chr6	79076671	79077500	+	0	NA	intron (NM_017934, intron 4 of 39)	(CGAG)n|Simple_repeat|Simple_repeat	1169	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
205389	chr7	16061951	16062500	+	0	NA	Intergenic	Intergenic	-148261	NR_038946	100506025		NR_038946	ENSG00000229688	CRPPA-AS1	ISPD-AS1	CRPPA antisense RNA 1	ncRNA
135387	chr2	160489051	160489580	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	4492	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
221741	chr8	127725621	127726250	+	0	NA	intron (NR_117102, intron 1 of 3)	intron (NR_117102, intron 1 of 3)	8032	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
170758	chr3	188438371	188438530	+	0	NA	intron (NR_164692, intron 3 of 9)	MIR|SINE|MIR	130216	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
209497	chr7	76736701	76736900	+	0	NA	Intergenic	Intergenic	-109497	NM_152992	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
182864	chr5	69739301	69739530	+	0	NA	Intergenic	Intergenic	2723	NR_134269	102724392		NR_134268		LINC02197	-	long intergenic non-protein coding RNA 2197	ncRNA
139499	chr2	224531201	224531730	+	0	NA	intron (NM_003590, intron 3 of 15)	intron (NM_003590, intron 3 of 15)	38490	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
16460	chr1	154599571	154600130	+	0	NA	intron (NM_001111, intron 2 of 14)	intron (NM_001111, intron 2 of 14)	6403	NM_001193495	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
212416	chr7	128201151	128202080	+	0	NA	Intergenic	CpG	-6257	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
100091	chr17	58314101	58314300	+	0	NA	intron (NM_001261835, intron 16 of 31)	intron (NM_001261835, intron 16 of 31)	-11250	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
2776	chr1	10795421	10795730	+	0	NA	intron (NM_017766, intron 1 of 15)	CpG	1071	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
210590	chr7	100372301	100373180	+	0	NA	promoter-TSS (NM_013439)	promoter-TSS (NM_013439)	-747	NM_178273	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
42838	chr11	73072801	73073300	+	0	NA	intron (NM_014824, intron 3 of 19)	intron (NM_014824, intron 3 of 19)	69268	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
43358	chr11	76782971	76784150	+	0	NA	promoter-TSS (NR_120561)	promoter-TSS (NR_120561)	204	NM_015516	25987		NM_015516	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
51679	chr12	53078601	53080180	+	0	NA	promoter-TSS (NM_032840)	promoter-TSS (NM_032840)	0	NM_032840	84926		NM_032840	ENSG00000167778	SPRYD3	-	SPRY domain containing 3	protein-coding
55671	chr12	107374151	107374550	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	53762	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
219978	chr8	89797051	89797150	+	0	NA	Intergenic	MER41B|LTR|ERV1	39284	NM_003821	8767		NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor interacting serine/threonine kinase 2	protein-coding
181536	chr5	43070301	43070950	+	0	NA	intron (NR_102752, intron 2 of 2)	MER34A|LTR|ERV1	-3186	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
21987	chr1	209747451	209748550	+	0	NA	Intergenic	CpG	-5438	NR_134510	101930114		NR_134509	ENSG00000227591	HSD11B1-AS1	-	HSD11B1 antisense RNA 1	ncRNA
209511	chr7	76983451	76983550	+	0	NA	intron (NR_023383, intron 1 of 10)	intron (NR_023383, intron 1 of 10)	2678	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
159090	chr3	12395271	12395680	+	0	NA	intron (NM_001354669, intron 5 of 6)	intron (NM_001354669, intron 5 of 6)	44058	NM_001354668	5468		NM_005037	ENSG00000132170	PPARG	CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARG5|PPARgamma	peroxisome proliferator activated receptor gamma	protein-coding
47006	chr12	203451	203750	+	0	NA	promoter-TSS (NR_120475)	promoter-TSS (NR_120475)	-45	NR_120475	101929384		NR_120475	ENSG00000256577	SLC6A12-AS1	-	SLC6A12 antisense RNA 1	ncRNA
119010	chr19	38899021	38900600	+	0	NA	promoter-TSS (NM_030593)	promoter-TSS (NM_030593)	52	NM_001193286	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
236707	chrX	77893901	77894500	+	0	NA	intron (NM_032121, intron 1 of 9)	intron (NM_032121, intron 1 of 9)	1235	NM_001367916	84061		NM_032121	ENSG00000102158	MAGT1	CDG1CC|IAP|MRX95|OST3B|PRO0756|SLC58A1|XMEN|bA217H1.1	magnesium transporter 1	protein-coding
169154	chr3	156525801	156526000	+	0	NA	intron (NM_172160, intron 12 of 13)	Tigger3b|DNA|TcMar-Tigger	28225	NM_001308205	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
98258	chr17	46181871	46182330	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	10682	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
106709	chr18	23455251	23455650	+	0	NA	intron (NR_145477, intron 1 of 12)	AluY|SINE|Alu	2163	NR_145477	8780		NM_003831	ENSG00000101782	RIOK3	SUDD	RIO kinase 3	protein-coding
181811	chr5	52738051	52738350	+	0	NA	Intergenic	Intergenic	-49716	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
211943	chr7	112472771	112473130	+	0	NA	intron (NM_001550, intron 11 of 11)	intron (NM_001550, intron 11 of 11)	-7903	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
81456	chr16	8887071	8887680	+	0	NA	Intergenic	Intergenic	-18363	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
180633	chr5	16726521	16726780	+	0	NA	intron (NM_012334, intron 19 of 40)	intron (NM_012334, intron 19 of 40)	-109592	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
209836	chr7	89418151	89418450	+	0	NA	Intergenic	LTR52|LTR|ERVL	-622563	NM_152706	219557		NM_152706	ENSG00000164645	TEX47	C7orf62|DYBLUF	testis expressed 47	protein-coding
113720	chr19	10459071	10459980	+	0	NA	intron (NM_001111307, intron 9 of 14)	intron (NM_001111307, intron 9 of 14)	6593	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
7619	chr1	35536771	35537130	+	0	NA	intron (NM_024874, intron 2 of 20)	intron (NM_024874, intron 2 of 20)	20453	NM_024874	79932		NM_024874	ENSG00000142687	KIAA0319L	AAVR|AAVRL	KIAA0319 like	protein-coding
179862	chr5	545071	545230	+	0	NA	Intergenic	LTR12|LTR|ERV1	-9268	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
136135	chr2	174039651	174040400	+	0	NA	Intergenic	Intergenic	14745	NR_136175	100128905		NR_136175	ENSG00000260868	LINC01960	-	long intergenic non-protein coding RNA 1960	ncRNA
141438	chr2	241009451	241010350	+	0	NA	intron (NM_001080437, intron 1 of 31)	intron (NM_001080437, intron 1 of 31)	11282	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
148635	chr21	5795521	5795830	+	0	NA	Intergenic	AluJr|SINE|Alu	177715	NM_017445	54145		NM_017445	ENSG00000234289	H2BC12L	H2B/s|H2BFS|H2BS1	H2B clustered histone 12 like	protein-coding
122379	chr19	49391551	49392730	+	0	NA	intron (NM_144688, intron 2 of 19)	intron (NM_144688, intron 2 of 19)	3891	NM_144688	147872		NM_144688	ENSG00000161609	KASH5	CCDC155|POF22|SPGF88	KASH domain containing 5	protein-coding
218242	chr8	42143021	42143280	+	0	NA	Intergenic	Intergenic	-9796	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
73473	chr15	43517251	43517950	+	0	NA	promoter-TSS (NM_002373)	promoter-TSS (NM_002373)	-8	NM_002373	4130		NM_002373	ENSG00000166963	MAP1A	MAP1L|MTAP1A	microtubule associated protein 1A	protein-coding
29833	chr10	72328671	72329280	+	0	NA	Intergenic	Intergenic	25944	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
73325	chr15	41936471	41938030	+	0	NA	intron (NM_139265, intron 3 of 5)	intron (NM_139265, intron 3 of 5)	15833	NR_120332	101928363		NR_120332	ENSG00000259883	EHD4-AS1	-	EHD4 antisense RNA 1	ncRNA
79793	chr16	1390571	1391280	+	0	NA	intron (NM_001372107, intron 8 of 14)	AluSq2|SINE|Alu	-11273	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
149091	chr21	15823351	15824130	+	0	NA	intron (NM_001352561, intron 10 of 23)	intron (NM_001352561, intron 10 of 23)	93758	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
132642	chr2	108722851	108723600	+	0	NA	intron (NM_006267, intron 1 of 28)	intron (NM_006267, intron 1 of 28)	3743	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
129702	chr2	70664301	70664900	+	0	NA	intron (NM_001617, intron 15 of 15)	intron (NM_001617, intron 15 of 15)	103115	NM_001185054	119		NM_001617	ENSG00000075340	ADD2	ADDB	adducin 2	protein-coding
188881	chr5	159469451	159470000	+	0	NA	Intergenic	L1ME3A|LINE|L1	-3449	NR_027110	285627		NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
186399	chr5	135372751	135373050	+	0	NA	intron (NM_138610, intron 2 of 8)	intron (NM_138610, intron 2 of 8)	26331	NM_138610	9555		NM_004893	ENSG00000113648	MACROH2A1	H2A.y|H2A/y|H2AF12M|H2AFY|MACROH2A1.1|mH2A1|macroH2A1.2	macroH2A.1 histone	protein-coding
192776	chr6	26530251	26530750	+	0	NA	Intergenic	AluJo|SINE|Alu	-7866	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
30020	chr10	73784151	73784500	+	0	NA	TTS (NM_203298)	TTS (NM_203298)	-1281	NM_001242487	23053		NM_015037	ENSG00000214655	ZSWIM8	KIAA0913	zinc finger SWIM-type containing 8	protein-coding
229354	chr9	120927301	120927890	+	0	NA	promoter-TSS (NM_005658)	promoter-TSS (NM_005658)	-799	NM_005658	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
74841	chr15	63509601	63511180	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	5797	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
219301	chr8	69994601	69994800	+	0	NA	Intergenic	Intergenic	76552	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
69933	chr14	99594721	99595780	+	0	NA	intron (NM_001144995, intron 1 of 5)	AluSx|SINE|Alu	8957	NM_001144995	317762		NM_022747	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
41577	chr11	66335301	66335500	+	0	NA	intron (NM_001363560, intron 5 of 9)	intron (NM_001363560, intron 5 of 9)	1034	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
71876	chr15	22429651	22429970	+	0	NA	intron (NR_033350, intron 12 of 17)	intron (NR_033350, intron 12 of 17)	8216	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
66059	chr14	58392121	58392380	+	0	NA	Intergenic	L1ME1|LINE|L1	-3680	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
219034	chr8	65646901	65647300	+	0	NA	intron (NM_014637, intron 1 of 7)	intron (NM_014637, intron 1 of 7)	2366	NM_014637	9650		NM_014637	ENSG00000066855	MTFR1	CHPPR|FAM54A2	mitochondrial fission regulator 1	protein-coding
167274	chr3	128621371	128621530	+	0	NA	intron (NM_002950, intron 9 of 9)	AluJb|SINE|Alu	29368	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
78399	chr15	91953271	91953630	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	99146	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
175859	chr4	79603821	79604080	+	0	NA	Intergenic	Intergenic	111357	NR_038826	100506035		NR_038826	ENSG00000250334	LINC00989	-	long intergenic non-protein coding RNA 989	ncRNA
13442	chr1	114352971	114353330	+	0	NA	Intergenic	Intergenic	158053	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
186093	chr5	134113171	134115100	+	0	NA	promoter-TSS (NM_003202)	promoter-TSS (NM_003202)	-546	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
35908	chr11	2418521	2419080	+	0	NA	intron (NM_014555, intron 4 of 23)	intron (NM_014555, intron 4 of 23)	4245	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
81305	chr16	4690221	4691050	+	0	NA	non-coding (NR_102267, exon 15 of 15)	non-coding (NR_102267, exon 15 of 15)	-3058	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
61887	chr13	77309001	77309880	+	0	NA	intron (NM_015057, intron 1 of 82)	intron (NM_015057, intron 1 of 82)	17654	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
228995	chr9	113576801	113577000	+	0	NA	intron (NM_001351526, intron 2 of 8)	L2|LINE|L2	-4028	NM_001282922	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
120840	chr19	45511901	45512550	+	0	NA	intron (NM_003370, intron 1 of 12)	intron (NM_003370, intron 1 of 12)	4746	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
74148	chr15	55265771	55266230	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	4286	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
55520	chr12	105234251	105234550	+	0	NA	promoter-TSS (NM_001251905)	promoter-TSS (NM_001251905)	-995	NM_001251905	55198		NM_018171	ENSG00000136044	APPL2	DIP13B	adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2	protein-coding
151736	chr22	17775201	17775550	+	0	NA	promoter-TSS (NM_001244570)	promoter-TSS (NM_001244570)	-710	NM_001244567	637		NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
7937	chr1	37543871	37544030	+	0	NA	intron (NM_024700, intron 2 of 3)	AluSz|SINE|Alu	10343	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
120375	chr19	43632001	43632400	+	0	NA	intron (NM_145296, intron 1 of 8)	L2a|LINE|L2	7650	NM_145296	199731		NM_145296	ENSG00000105767	CADM4	IGSF4C|NECL4|Necl-4|TSLL2|synCAM4	cell adhesion molecule 4	protein-coding
2245	chr1	8880201	8880700	+	0	NA	TTS (NR_038351)	TTS (NR_038351)	1615	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
58651	chr12	132520071	132520400	+	0	NA	intron (NM_001382740, intron 2 of 11)	intron (NM_001382740, intron 2 of 11)	14829	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
134788	chr2	147841701	147841900	+	0	NA	Intergenic	Intergenic	-2717	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
197988	chr6	90054101	90054500	+	0	NA	intron (NM_021813, intron 5 of 8)	L1PA4|LINE|L1	159831	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
19788	chr1	182391121	182392250	+	0	NA	promoter-TSS (NM_001033056)	promoter-TSS (NM_001033056)	105	NM_001033044	2752		NM_002065	ENSG00000135821	GLUL	DEE116|GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
122073	chr19	48719371	48719780	+	0	NA	intron (NM_001130915, intron 1 of 9)	intron (NM_001130915, intron 1 of 9)	150	NM_001130915	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
105219	chr17	82339321	82339580	+	0	NA	Intergenic	MER41G|LTR|ERV1	-5684	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
235217	chrX	41365221	41365980	+	0	NA	Intergenic	Intergenic	31434	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
83853	chr16	28878001	28878580	+	0	NA	promoter-TSS (NM_004320)	promoter-TSS (NM_004320)	-198	NM_004320	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
82333	chr16	15858051	15858350	+	0	NA	Intergenic	CpG	-1170	NM_022844	4629		NM_002474	ENSG00000133392	MYH11	AAT4|FAA4|SMHC|SMMHC|SMMS-1|VSCM2	myosin heavy chain 11	protein-coding
161245	chr3	39233801	39234030	+	0	NA	Intergenic	Intergenic	-41320	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
172457	chr4	2003101	2003300	+	0	NA	intron (NM_005663, intron 1 of 10)	L1PA8A|LINE|L1	5774	NM_005663	7469		NM_005663	ENSG00000185049	NELFA	NELF-A|P/OKcl.15|WHSC2	negative elongation factor complex member A	protein-coding
95278	chr17	35513221	35513480	+	0	NA	intron (NM_001363830, intron 2 of 4)	intron (NM_001363830, intron 2 of 4)	24511	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
34920	chr11	416411	417640	+	0	NA	TTS (NM_001012302)	TTS (NM_001012302)	372	NM_021805	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
54508	chr12	92100971	92101130	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	40663	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
106631	chr18	22395501	22395700	+	0	NA	Intergenic	Intergenic	22315	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
1672	chr1	3911651	3911750	+	0	NA	intron (NR_024455, intron 2 of 3)	intron (NR_024455, intron 2 of 3)	11296	NR_024455	100133612		NR_024455	ENSG00000236423	LINC01134	TLNC1	long intergenic non-protein coding RNA 1134	ncRNA
90829	chr17	2300371	2300730	+	0	NA	exon (NM_017575, exon 2 of 19)	exon (NM_017575, exon 2 of 19)	3235	NM_017575	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
128145	chr2	48362401	48363280	+	0	NA	intron (NM_001375450, intron 5 of 6)	Tigger3b|DNA|TcMar-Tigger	48158	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
204618	chr7	5370421	5371380	+	0	NA	exon (NM_001080495, exon 11 of 30)	exon (NM_001080495, exon 11 of 30)	52646	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
27420	chr10	31448921	31449180	+	0	NA	intron (NM_001323664, intron 3 of 10)	L1PA2|LINE|L1	-49295	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
143656	chr20	31878321	31878580	+	0	NA	intron (NR_148014, intron 3 of 18)	intron (NR_148014, intron 3 of 18)	-1367	NM_001367620	164395		NM_001008409	ENSG00000131044	TTLL9	C20orf125	tubulin tyrosine ligase like 9	protein-coding
135014	chr2	154427351	154427650	+	0	NA	intron (NM_001376401, intron 11 of 12)	intron (NM_001376401, intron 11 of 12)	29938	NR_161181	100144595		NR_161181	ENSG00000224675	GALNT13-AS1	-	GALNT13 antisense RNA 1	ncRNA
187207	chr5	140673451	140674100	+	0	NA	promoter-TSS (NM_194249)	promoter-TSS (NM_194249)	-199	NM_194249	373863		NM_194249	ENSG00000256453	DND1	RBMS4	DND microRNA-mediated repression inhibitor 1	protein-coding
111342	chr19	3648951	3649700	+	0	NA	intron (NM_001300849, intron 8 of 16)	CpG	-22510	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
141867	chr20	663671	664230	+	0	NA	exon (NM_033129, exon 2 of 2)	exon (NM_033129, exon 2 of 2)	-10750	NM_080725	140809		NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
19123	chr1	171509501	171509900	+	0	NA	intron (NM_015172, intron 1 of 33)	MER5A|DNA|hAT-Charlie	24170	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
43196	chr11	75414321	75415730	+	0	NA	intron (NM_001256802, intron 6 of 6)	intron (NM_001256802, intron 6 of 6)	10604	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
4727	chr1	23343531	23345530	+	0	NA	promoter-TSS (NM_005826)	promoter-TSS (NM_005826)	-246	NM_001102397	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
150534	chr21	42977801	42978130	+	0	NA	intron (NM_001320694, intron 1 of 10)	Tigger1|DNA|TcMar-Tigger	3403	NM_004571	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
15227	chr1	149533651	149533750	+	0	NA	intron (NM_001351365, intron 66 of 92)	(TG)n|Simple_repeat|Simple_repeat	-50123	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
208008	chr7	55546771	55547150	+	0	NA	intron (NM_001321243, intron 1 of 5)	intron (NM_001321243, intron 1 of 5)	5806	NM_001284282	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
119237	chr19	39475251	39475950	+	0	NA	intron (NM_001111020, intron 28 of 29)	intron (NM_001111020, intron 28 of 29)	-5238	NM_001329559	92609		NM_001001563	ENSG00000105197	TIMM50	MGCA9|TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
205083	chr7	6644871	6645030	+	0	NA	intron (NM_001278559, intron 8 of 8)	intron (NM_001278559, intron 8 of 8)	7632	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
224574	chr9	19998201	19998650	+	0	NA	Intergenic	Intergenic	-209388	NM_001193288	25769		NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
143906	chr20	32587321	32587950	+	0	NA	intron (NR_034152, intron 1 of 2)	L2a|LINE|L2	156	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
204485	chr7	4748271	4749030	+	0	NA	intron (NM_001037165, intron 2 of 8)	HAL1|LINE|L1	-26973	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
68524	chr14	88868671	88868830	+	0	NA	intron (NM_144596, intron 10 of 14)	Kanga1a|DNA|TcMar-Tc2	44099	NM_001366535	123016		NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
118927	chr19	38741371	38742000	+	0	NA	intron (NM_144691, intron 4 of 20)	intron (NM_144691, intron 4 of 20)	2789	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
104393	chr17	81041951	81042730	+	0	NA	intron (NR_169579, intron 2 of 15)	AluJo|SINE|Alu	7189	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
198271	chr6	99602471	99603030	+	0	NA	Intergenic	Intergenic	-4083	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
141361	chr2	240629101	240629300	+	0	NA	intron (NM_005301, intron 1 of 1)	intron (NM_005301, intron 1 of 1)	3955	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
239085	chrY	10459371	10459850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	548812	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
18915	chr1	168408891	168409680	+	0	NA	intron (NR_037851, intron 3 of 3)	intron (NR_037851, intron 3 of 3)	13371	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
122346	chr19	49266251	49266880	+	0	NA	Intergenic	LTR13|LTR|ERVK	42303	NR_036209	100422979		NR_036209	ENSG00000265407	MIR4324	mir-4324	microRNA 4324	ncRNA
207970	chr7	55288101	55288300	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-32565	NR_110426	102725541		NR_110426		ELDR	Fabl|LINC01156	EGFR long non-coding downstream RNA	ncRNA
206265	chr7	29337051	29338380	+	0	NA	intron (NM_001293070, intron 2 of 13)	intron (NM_001293070, intron 2 of 13)	-128745	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
33433	chr10	118850651	118850750	+	0	NA	Intergenic	Intergenic	-95730	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
14002	chr1	120689271	120689430	+	0	NA	Intergenic	AluSq|SINE|Alu	-23914	NR_144517	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
157864	chr22	49494351	49494450	+	0	NA	intron (NR_110523, intron 1 of 4)	intron (NR_110523, intron 1 of 4)	49066	NR_037440	100500882		NR_037440	ENSG00000264139	MIR3667	-	microRNA 3667	ncRNA
107018	chr18	32090001	32090400	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1674	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
73060	chr15	40903821	40905030	+	0	NA	TTS (NM_020857)	TTS (NM_020857)	-2384	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
75666	chr15	67761471	67761630	+	0	NA	intron (NM_145160, intron 19 of 21)	intron (NM_145160, intron 19 of 21)	-63959	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
124526	chr2	207001	207600	+	0	NA	Intergenic	Intergenic	49040	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
22692	chr1	223844771	223847050	+	0	NA	promoter-TSS (NM_005426)	promoter-TSS (NM_005426)	37	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
184703	chr5	109340821	109341080	+	0	NA	intron (NM_014819, intron 9 of 9)	SVA_F|Retroposon|SVA	-14581	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
226828	chr9	77778801	77779580	+	0	NA	intron (NM_002072, intron 5 of 6)	L1MC1|LINE|L1	-130868	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
88553	chr16	85492021	85492280	+	0	NA	Intergenic	Intergenic	-119259	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
164677	chr3	67381771	67381930	+	0	NA	intron (NM_003848, intron 10 of 10)	intron (NM_003848, intron 10 of 10)	156386	NR_036234	100422941		NR_036234	ENSG00000283298	MIR4272	-	microRNA 4272	ncRNA
151360	chr21	45769321	45769580	+	0	NA	intron (NM_001348243, intron 3 of 15)	intron (NM_001348243, intron 3 of 15)	21436	NM_001382277	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
91494	chr17	4905801	4906200	+	0	NA	Intergenic	Intergenic	-2902	NM_000080	1145		NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1A1|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|FIM1|FIMG|FIMG1|MGI|SCCMS	cholinergic receptor nicotinic epsilon subunit	protein-coding
190745	chr6	403251	404230	+	0	NA	intron (NR_046000, intron 7 of 9)	intron (NR_046000, intron 7 of 9)	11988	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
4775	chr1	23543621	23543880	+	0	NA	Intergenic	Intergenic	-12517	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
23368	chr1	228162171	228163130	+	0	NA	Intergenic	Intergenic	2198	NR_103539	574432		NR_103539	ENSG00000203684	IBA57-DT	C1orf148|IBA57-AS1	IBA57 divergent transcript	ncRNA
73095	chr15	40954371	40954530	+	0	NA	intron (NM_001142776, intron 2 of 3)	MER5A1|DNA|hAT-Charlie	979	NM_024111	79094		NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
230893	chr9	129224421	129224950	+	0	NA	Intergenic	Intergenic	-46424	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
65512	chr14	51898751	51899650	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	19371	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
10371	chr1	64956101	64956330	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	10334	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
42720	chr11	72685751	72686350	+	0	NA	exon (NM_001135190, exon 30 of 31)	exon (NM_001135190, exon 30 of 31)	-11628	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
53989	chr12	75260251	75260550	+	0	NA	Intergenic	MamRep1527|LTR|LTR	25660	NR_149000	100130268		NR_149000	ENSG00000254451	LOC100130268	-	uncharacterized LOC100130268	ncRNA
23677	chr1	231364301	231364500	+	0	NA	3' UTR (NM_022051, exon 5 of 5)	3' UTR (NM_022051, exon 5 of 5)	26107	NM_032018	83932		NM_032018	ENSG00000010072	SPRTN	C1orf124|DVC1|PRO4323|spartan	SprT-like N-terminal domain	protein-coding
188014	chr5	149550761	149552080	+	0	NA	promoter-TSS (NM_001271741)	promoter-TSS (NM_001271741)	19	NM_001892	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
165751	chr3	105744771	105745150	+	0	NA	intron (NM_001321811, intron 5 of 16)	intron (NM_001321811, intron 5 of 16)	122631	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
184954	chr5	113073571	113074200	+	0	NA	intron (NM_001085377, intron 11 of 18)	L1PA5|LINE|L1	97087	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
232118	chr9	133742771	133743290	+	0	NA	Intergenic	Intergenic	-3075	NM_007101	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
10902	chr1	83182251	83182350	+	0	NA	Intergenic	L1PA2|LINE|L1	-196092	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
219807	chr8	81288921	81289450	+	0	NA	Intergenic	L2a|LINE|L2	8649	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
197576	chr6	79868151	79868600	+	0	NA	Intergenic	Intergenic	-56129	NR_131786	89758		NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
16073	chr1	153465601	153466000	+	0	NA	Intergenic	Intergenic	-5149	NM_002963	6278		NM_002963	ENSG00000143556	S100A7	PSOR1|S100A7c	S100 calcium binding protein A7	protein-coding
53238	chr12	62465251	62465350	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1526	NM_001278472	23041		NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
92696	chr17	14067601	14067800	+	0	NA	intron (NR_049718, intron 1 of 2)	intron (NR_049718, intron 1 of 2)	1758	NR_049718	100874058		NR_049718	ENSG00000236088	COX10-DT	COX10-AS|COX10-AS1|COX10AS	COX10 divergent transcript	ncRNA
95758	chr17	38624601	38625130	+	0	NA	Intergenic	L1ME1|LINE|L1	-18913	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
103625	chr17	78740971	78741130	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-4148	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
78197	chr15	90572171	90572330	+	0	NA	intron (NM_001042574, intron 2 of 14)	L1ME4b|LINE|L1	42327	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
16286	chr1	154160371	154161500	+	0	NA	TTS (NM_152263)	TTS (NM_152263)	-5819	NM_001159484	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
142314	chr20	3660651	3661730	+	0	NA	exon (NM_145762, exon 2 of 5)	exon (NM_145762, exon 2 of 5)	2209	NM_022139	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
184604	chr5	103245821	103246530	+	0	NA	Intergenic	Intergenic	-12199	NM_001377283	90355		NM_033211	ENSG00000181751	MACIR	C5orf30	macrophage immunometabolism regulator	protein-coding
29180	chr10	68905371	68905530	+	0	NA	intron (NM_024045, intron 1 of 14)	intron (NM_024045, intron 1 of 14)	4135	NM_024045	79009		NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
63824	chr14	21457501	21458230	+	0	NA	Intergenic	AluSp|SINE|Alu	-1742	NM_001170629	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
5081	chr1	24694171	24694780	+	0	NA	Intergenic	MIR|SINE|MIR	50896	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
162968	chr3	49685501	49687380	+	0	NA	exon (NM_020998, exon 8 of 18)	exon (NM_020998, exon 8 of 18)	2323	NM_020998	4485		NM_020998	ENSG00000173531	MST1	D3F15S2|DNF15S2|HGFL|MSP|NF15S2	macrophage stimulating 1	protein-coding
174938	chr4	49131601	49132280	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	145298	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
115152	chr19	14403301	14403600	+	0	NA	intron (NM_001025160, intron 11 of 18)	AluJo|SINE|Alu	15891	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
65388	chr14	50773651	50774050	+	0	NA	intron (NM_020921, intron 7 of 30)	intron (NM_020921, intron 7 of 30)	-47947	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
181084	chr5	36875701	36876200	+	0	NA	promoter-TSS (NM_015384)	promoter-TSS (NM_015384)	744	NR_046262	646719		NR_046262	ENSG00000285967	NIPBL-DT	NIPBL-AS|NIPBL-AS1	NIPBL divergent transcript	ncRNA
17483	chr1	156718971	156719380	+	0	NA	Intergenic	AluSx4|SINE|Alu	9264	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
25445	chr10	6588701	6588900	+	0	NA	Intergenic	Intergenic	-8154	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
181317	chr5	40359151	40359480	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	307024	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
119169	chr19	39406001	39408300	+	0	NA	intron (NM_003407, intron 1 of 1)	CpG	303	NM_003407	7538		NM_003407	ENSG00000128016	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding
208464	chr7	66986771	66988550	+	0	NA	TTS (NM_016038)	TTS (NM_016038)	7926	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
98778	chr17	48134251	48134580	+	0	NA	intron (NM_001075099, intron 12 of 12)	AluSg|SINE|Alu	22096	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
131463	chr2	96353801	96354150	+	0	NA	intron (NM_001281711, intron 8 of 17)	intron (NM_001281711, intron 8 of 17)	18209	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
204992	chr7	6437401	6437900	+	0	NA	intron (NM_139179, intron 2 of 14)	AluSx1|SINE|Alu	10304	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
142087	chr20	2507401	2507600	+	0	NA	intron (NM_001282495, intron 1 of 6)	intron (NM_001282495, intron 1 of 6)	1415	NM_001321800	79175		NM_024325	ENSG00000088876	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
76042	chr15	72230001	72230600	+	0	NA	promoter-TSS (NM_001206799)	promoter-TSS (NM_001206799)	-389	NM_001206799	5315		NM_002654	ENSG00000067225	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1|p58	pyruvate kinase M1/2	protein-coding
77105	chr15	78928651	78929230	+	0	NA	intron (NM_001319137, intron 9 of 12)	intron (NM_001319137, intron 9 of 12)	16106	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
90560	chr17	1509521	1510180	+	0	NA	intron (NM_016532, intron 3 of 11)	intron (NM_016532, intron 3 of 11)	6762	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
23924	chr1	235076821	235077080	+	0	NA	Intergenic	Intergenic	-7132	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
125471	chr2	12326871	12327030	+	0	NA	intron (NR_110196, intron 4 of 5)	L2b|LINE|L2	127820	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
93631	chr17	19168721	19169380	+	0	NA	Intergenic	Intergenic	-6426	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
196057	chr6	42119151	42119450	+	0	NA	intron (NM_001164446, intron 2 of 4)	AluJo|SINE|Alu	23320	NM_001164446	647024		NM_001164446	ENSG00000188112	C6orf132	LncCCLM|bA7K24.2	chromosome 6 open reading frame 132	protein-coding
4246	chr1	19595121	19595580	+	0	NA	intron (NR_135054, intron 1 of 1)	intron (NR_135054, intron 1 of 1)	1482	NR_135054	105378614		NR_135054	ENSG00000235185	MICOS10-DT	-	MICOS10 divergent transcript	ncRNA
174074	chr4	26985621	26986170	+	0	NA	intron (NM_020860, intron 3 of 11)	intron (NM_020860, intron 3 of 11)	125054	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
219586	chr8	79771721	79772130	+	0	NA	intron (NR_110954, intron 4 of 5)	intron (NR_110954, intron 4 of 5)	3783	NR_125410	101927067		NR_125410	ENSG00000272138	LINC01607	-	long intergenic non-protein coding RNA 1607	ncRNA
188387	chr5	152470351	152470850	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-65321	NM_020167	56923		NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
148552	chr20	64234001	64235130	+	0	NA	intron (NM_004535, intron 19 of 22)	intron (NM_004535, intron 19 of 22)	-21130	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
140206	chr2	231704021	231704280	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-4375	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
90595	chr17	1607251	1607950	+	0	NA	intron (NM_152346, intron 5 of 13).2	intron (NM_152346, intron 5 of 13).2	-2566	NM_001284499	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
177626	chr4	121182201	121182880	+	0	NA	intron (NM_001128843, intron 3 of 12)	intron (NM_001128843, intron 3 of 12)	-18219	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
76554	chr15	75210801	75211000	+	0	NA	exon (NM_015492, exon 3 of 3)	exon (NM_015492, exon 3 of 3)	9018	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
238872	chrX	154532871	154533450	+	0	NA	intron (NM_000402, intron 8 of 12)	intron (NM_000402, intron 8 of 12)	-8078	NM_001377312	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
77498	chr15	84635371	84635530	+	0	NA	intron (NR_004859, intron 2 of 4)	AluSx|SINE|Alu	3990	NR_003654	54581		NM_022050		SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
134294	chr2	135944651	135944950	+	0	NA	intron (NM_001293312, intron 3 of 14)	intron (NM_001293312, intron 3 of 14)	-40376	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
162996	chr3	49725871	49726580	+	0	NA	3' UTR (NM_001006115, exon 5 of 5)	3' UTR (NM_001006115, exon 5 of 5)	-2251	NM_013334	29925		NM_013334	ENSG00000173540	GMPPB	LGMDR19|MDDGA14|MDDGB14|MDDGC14	GDP-mannose pyrophosphorylase B	protein-coding
162640	chr3	48813971	48814130	+	0	NA	intron (NM_004157, intron 1 of 10)	AluSc|SINE|Alu	33824	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
51168	chr12	50213251	50214250	+	0	NA	intron (NM_001113547, intron 1 of 7)	intron (NM_001113547, intron 1 of 7)	8908	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
225255	chr9	34332321	34332600	+	0	NA	intron (NM_001244390, intron 1 of 2)	L2c|LINE|L2	2891	NM_001161	318		NM_001161	ENSG00000164978	NUDT2	APAH1|IDDPN	nudix hydrolase 2	protein-coding
154503	chr22	35695201	35695900	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-22322	NM_030642	80831		NM_030642	ENSG00000128313	APOL5	APOL-V|APOLV	apolipoprotein L5	protein-coding
62623	chr13	100629521	100630070	+	0	NA	intron (NR_146794, intron 11 of 18)	MLT1B|LTR|ERVL-MaLR	-41003	NM_001195087	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
147189	chr20	56630401	56630800	+	0	NA	intron (NM_003222, intron 1 of 6)	CpG-17886	1294	NM_003222	7022		NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma	protein-coding
82215	chr16	15016351	15016730	+	0	NA	intron (NM_001324019, intron 9 of 22)	MLT1K|LTR|ERVL-MaLR	-6143	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
18727	chr1	167466001	167466200	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	52429	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
30390	chr10	78096521	78096780	+	0	NA	Intergenic	L1PA7|LINE|L1	62787	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
133121	chr2	112655771	112656330	+	0	NA	intron (NM_005415, intron 5 of 10)	intron (NM_005415, intron 5 of 10)	10111	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
51400	chr12	51973921	51974280	+	0	NA	intron (NM_020327, intron 1 of 8)	intron (NM_020327, intron 1 of 8)	20720	NM_020327	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
98941	chr17	48631721	48632450	+	0	NA	TTS (NR_029582)	TTS (NR_029582)	474	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
78029	chr15	89999021	89999780	+	0	NA	Intergenic	Intergenic	-1924	NM_198526	374655		NM_198526	ENSG00000140548	ZNF710	-	zinc finger protein 710	protein-coding
3933	chr1	17494251	17494550	+	0	NA	Intergenic	Intergenic	-45298	NR_137287	55160		NM_018125	ENSG00000074964	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor 10 like	protein-coding
150086	chr21	37410851	37411650	+	0	NA	intron (NM_101395, intron 2 of 12)	AluSx3|SINE|Alu	-7655	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
228482	chr9	99922401	99922600	+	0	NA	intron (NM_017919, intron 2 of 7)	intron (NM_017919, intron 2 of 7)	15846	NM_017919	55014		NM_017919	ENSG00000136874	STX17	-	syntaxin 17	protein-coding
202481	chr6	158255551	158255650	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-56865	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
113173	chr19	8397571	8397730	+	0	NA	intron (NM_004218, intron 1 of 4)	intron (NM_004218, intron 1 of 4)	-6959	NR_038237	100507567		NR_038237	ENSG00000269386	RAB11B-AS1	MIR4999HG	RAB11B antisense RNA 1	ncRNA
85573	chr16	53470051	53470350	+	0	NA	intron (NM_001323609, intron 15 of 20)	intron (NM_001323609, intron 15 of 20)	33009	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
104099	chr17	80270101	80270380	+	0	NA	intron (NM_020954, intron 2 of 16)	intron (NM_020954, intron 2 of 16)	9388	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
195312	chr6	36595201	36597500	+	0	NA	intron (NM_003017, intron 1 of 5)	intron (NM_003017, intron 1 of 5)	1988	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
234097	chrX	9351001	9351300	+	0	NA	Intergenic	Intergenic	-112145	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
26700	chr10	22645201	22645500	+	0	NA	intron (NM_005028, intron 1 of 9)	AluJr|SINE|Alu	68758	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
30365	chr10	77877701	77878700	+	0	NA	intron (NM_004747, intron 1 of 31).2	intron (NM_004747, intron 1 of 31).2	48555	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
152207	chr22	20124451	20124550	+	0	NA	intron (NM_002882, intron 3 of 5)	(GCATGG)n|Simple_repeat|Simple_repeat	-1902	NR_145765	109617010		NR_145765	ENSG00000264346	SNORA77B	-	small nucleolar RNA, H/ACA box 77B	snoRNA
99007	chr17	48804871	48805380	+	0	NA	intron (NM_001366314, intron 1 of 13)	intron (NM_001366314, intron 1 of 13)	-10801	NM_173623	284076		NM_173623	ENSG00000170703	TTLL6	TTL.6	tubulin tyrosine ligase like 6	protein-coding
165939	chr3	107574701	107575000	+	0	NA	intron (NM_020235, intron 2 of 16)	intron (NM_020235, intron 2 of 16)	51888	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
55869	chr12	109450871	109451430	+	0	NA	non-coding (NR_133898, exon 6 of 6)	non-coding (NR_133898, exon 6 of 6)	26150	NR_133897	83892		NM_031954	ENSG00000110906	KCTD10	BTBD28|MSTP028|ULRO61|hBACURD3	potassium channel tetramerization domain containing 10	protein-coding
51861	chr12	53479171	53479600	+	0	NA	TTS (NM_001193511)	TTS (NM_001193511)	14917	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
109206	chr19	458651	458950	+	0	NA	intron (NM_012435, intron 1 of 12)	CpG	2196	NM_012435	25759		NM_012435	ENSG00000129946	SHC2	SCK|SHCB|SLI	SHC adaptor protein 2	protein-coding
31836	chr10	99618851	99619300	+	0	NA	intron (NM_031212, intron 1 of 3)	intron (NM_031212, intron 1 of 3)	1364	NM_031212	81894		NM_031212	ENSG00000155287	SLC25A28	MFRN2|MRS3/4|MRS4L|NPD016	solute carrier family 25 member 28	protein-coding
135881	chr2	171086451	171087080	+	0	NA	intron (NM_012290, intron 2 of 20)	L1MEf|LINE|L1	-19792	NM_001136555	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
104142	chr17	80383001	80383200	+	0	NA	intron (NM_001256071, intron 58 of 67)	intron (NM_001256071, intron 58 of 67)	-32067	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
1740	chr1	5990171	5990330	+	0	NA	intron (NR_111987, intron 1 of 32)	intron (NR_111987, intron 1 of 32)	2175	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
57545	chr12	122181921	122182180	+	0	NA	intron (NM_152759, intron 1 of 11)	MLT1A0|LTR|ERVL-MaLR	-1073	NM_001098519	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
221412	chr8	123537551	123538130	+	0	NA	intron (NM_001242463, intron 1 of 6)	intron (NM_001242463, intron 1 of 6)	3366	NM_058229	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
192749	chr6	26407571	26407930	+	0	NA	exon (NM_001145009, exon 4 of 10)	exon (NM_001145009, exon 4 of 10)	5475	NM_001145009	11119		NM_007048	ENSG00000026950	BTN3A1	BT3.1|BTF5|BTN3.1|CD277	butyrophilin subfamily 3 member A1	protein-coding
116184	chr19	17450251	17451000	+	0	NA	Intergenic	L1MB5|LINE|L1	-1957	NM_001190844	100130519		NM_001190844	ENSG00000188051	TMEM221	Jiraiya	transmembrane protein 221	protein-coding
135335	chr2	160381371	160382150	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	26122	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
114297	chr19	11740371	11740530	+	0	NA	Intergenic	Intergenic	-1504	NM_017507	55552		NM_017507	ENSG00000197933	ZNF823	HSZFP36	zinc finger protein 823	protein-coding
154217	chr22	31520901	31521100	+	0	NA	intron (NM_001258326, intron 2 of 30)	AluJb|SINE|Alu	24464	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
168040	chr3	136914751	136915050	+	0	NA	intron (NM_001291999, intron 1 of 3)	MSTB1|LTR|ERVL-MaLR	-15602	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
141789	chr20	209051	209300	+	0	NA	Intergenic	Intergenic	-18083	NM_080831	140881		NM_080831	ENSG00000125903	DEFB129	C20orf87|DEFB-29|DEFB29|bA530N10.3|hBD-29	defensin beta 129	protein-coding
76235	chr15	73964771	73965220	+	0	NA	Intergenic	Intergenic	27300	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
25542	chr10	7407901	7408800	+	0	NA	intron (NM_001029880, intron 1 of 20)	CpG	991	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
185199	chr5	119397571	119398030	+	0	NA	3' UTR (NM_001286813, exon 3 of 3)	3' UTR (NM_001286813, exon 3 of 3)	41781	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
51201	chr12	50516771	50516930	+	0	NA	intron (NM_173602, intron 1 of 37)	AluSx1|SINE|Alu	11865	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
55209	chr12	101791771	101791930	+	0	NA	intron (NM_024312, intron 2 of 20)	intron (NM_024312, intron 2 of 20)	39109	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
152513	chr22	20956951	20957250	+	0	NA	promoter-TSS (NR_110537)	promoter-TSS (NR_110537)	8	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
190402	chr5	179808351	179808800	+	0	NA	intron (NM_001142299, intron 1 of 8)	AluSc8|SINE|Alu	1566	NM_001142299	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
112593	chr19	6710571	6711350	+	0	NA	intron (NM_000064, intron 12 of 40)	intron (NM_000064, intron 12 of 40)	9690	NM_000064	718		NM_000064	ENSG00000125730	C3	AHUS5|ARMD9|ASP|C3a|C3b|CPAMD1|HEL-S-62p	complement C3	protein-coding
90492	chr17	1438871	1439030	+	0	NA	intron (NM_016823, intron 1 of 2)	AluJo|SINE|Alu	17282	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
37096	chr11	13259221	13259680	+	0	NA	Intergenic	L1MB2|LINE|L1	-17202	NM_001351804	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
25054	chr10	3780811	3781800	+	0	NA	intron (NR_027653, intron 2 of 3)	intron (NR_027653, intron 2 of 3)	3904	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
167525	chr3	129282661	129283380	+	0	NA	intron (NM_001370345, intron 2 of 5)	MER20|DNA|hAT-Charlie	4026	NM_001370343	56941		NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine binding, ES cell specific	protein-coding
118469	chr19	35890701	35890900	+	0	NA	intron (NM_139239, intron 9 of 11)	AluJr|SINE|Alu	8937	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
209164	chr7	75240021	75240280	+	0	NA	intron (NM_001382495, intron 1 of 8).2	AluSz|SINE|Alu	-2445	NR_002206	2970		NR_002206	ENSG00000290871	GTF2IP1	WBSCR7	general transcription factor IIi pseudogene 1	pseudo
185042	chr5	115813801	115814100	+	0	NA	exon (NM_001323565, exon 2 of 6)	exon (NM_001323565, exon 2 of 6)	2709	NR_136618	1036		NM_001801	ENSG00000129596	CDO1	CDO-I	cysteine dioxygenase type 1	protein-coding
148719	chr21	6721471	6721630	+	0	NA	Intergenic	L1PA8|LINE|L1	-136900	NR_146656	110091777		NR_146655		LOC110091777	-	uncharacterized LOC110091777	ncRNA
206189	chr7	28174371	28175350	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-5597	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
148687	chr21	6266601	6266850	+	0	NA	intron (NM_001322036, intron 1 of 2).3	MER57E3|LTR|ERV1	611	NM_001322044	102724219		NM_001322044		LINC03104	-	long intergenic non-protein coding RNA 3104	ncRNA
136187	chr2	174548201	174549100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	9422	NR_004394	26827		NR_004394	ENSG00000206625	RNU6-1	RNU6|RNU6A|U6|U6-1	RNA, U6 small nuclear 1	snRNA
56098	chr12	110699671	110699830	+	0	NA	Intergenic	MIRb|SINE|MIR	-9973	NM_001256413	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
11904	chr1	93345251	93347580	+	0	NA	promoter-TSS (NR_034089)	promoter-TSS (NR_034089)	508	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
182136	chr5	56190501	56190850	+	0	NA	intron (NM_024669, intron 2 of 11)	MSTD|LTR|ERVL-MaLR	42655	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
219315	chr8	70140321	70140680	+	0	NA	intron (NM_001321713, intron 13 of 21)	MER5A|DNA|hAT-Charlie	-69248	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
77604	chr15	85316201	85317000	+	0	NA	Intergenic	Intergenic	-63996	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
95546	chr17	36673801	36674680	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	72657	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
94579	chr17	29690401	29690800	+	0	NA	intron (NM_033389, intron 4 of 14)	intron (NM_033389, intron 4 of 14)	-69177	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
224225	chr9	5628261	5630450	+	0	NA	exon (NM_020829, exon 1 of 26)	exon (NM_020829, exon 1 of 26)	236	NM_001206557	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
85322	chr16	50024401	50025910	+	0	NA	promoter-TSS (NR_104042)	promoter-TSS (NR_104042)	-51	NM_001281789	255919		NM_153261	ENSG00000205423	CNEP1R1	C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding
130368	chr2	85134371	85134730	+	0	NA	intron (NM_031283, intron 3 of 11)	CpG-16213	1158	NM_031283	83439		NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	transcription factor 7 like 1	protein-coding
98118	chr17	45784051	45784380	+	0	NA	promoter-TSS (NM_004382).3	promoter-TSS (NM_004382).3	-65	NM_001303020	1394		NM_004382	ENSG00000120088	CRHR1	CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRHR|CRHR1L	corticotropin releasing hormone receptor 1	protein-coding
191047	chr6	3249651	3249750	+	0	NA	Intergenic	Intergenic	-9247	NM_001135750	389362		NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
156308	chr22	40538801	40539200	+	0	NA	intron (NM_001282661, intron 3 of 13)	AluSx1|SINE|Alu	-5173	NM_001318139	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
214094	chr7	143702951	143703050	+	0	NA	exon (NM_001363538, exon 2 of 8)	exon (NM_001363538, exon 2 of 8)	-12846	NM_001130026	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
57442	chr12	121900201	121900400	+	0	NA	intron (NM_002813, intron 3 of 5)	AluJb|SINE|Alu	11510	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
204868	chr7	5837371	5837800	+	0	NA	intron (NR_023382, intron 2 of 6)	intron (NR_023382, intron 2 of 6)	14425	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
20496	chr1	198649651	198650580	+	0	NA	intron (NM_002838, intron 2 of 32)	L2a|LINE|L2	11075	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
106566	chr18	21706721	21706980	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2076	NM_138340	171586		NM_138340	ENSG00000158201	ABHD3	LABH3	abhydrolase domain containing 3, phospholipase	protein-coding
84740	chr16	30947471	30947630	+	0	NA	3' UTR (NM_001282351, exon 11 of 11)	3' UTR (NM_001282351, exon 11 of 11)	-1518	NM_152288	93129		NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
229182	chr9	114598921	114599700	+	0	NA	TTS (NM_004888)	TTS (NM_004888)	11541	NM_004888	9550		NM_004888	ENSG00000136888	ATP6V1G1	ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10	ATPase H+ transporting V1 subunit G1	protein-coding
141617	chr2	241670801	241672430	+	0	NA	intron (NM_178326, intron 12 of 12)	intron (NM_178326, intron 12 of 12)	15200	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
173943	chr4	25855951	25856050	+	0	NA	intron (NM_001297592, intron 1 of 23)	intron (NM_001297592, intron 1 of 23)	6988	NM_015187	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
98811	chr17	48312971	48313530	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	18903	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
215800	chr8	2216171	2216530	+	0	NA	Intergenic	Intergenic	139761	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
197451	chr6	75205071	75205550	+	0	NA	intron (NM_080645, intron 1 of 50)	CpG	743	NM_004370	1303		NM_004370	ENSG00000111799	COL12A1	BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2	collagen type XII alpha 1 chain	protein-coding
69439	chr14	94158221	94159150	+	0	NA	Intergenic	Intergenic	-15627	NM_020958	57718		NM_020958	ENSG00000119698	PPP4R4	CFAP14|KIAA1622|PP4R4	protein phosphatase 4 regulatory subunit 4	protein-coding
113645	chr19	10352171	10353030	+	0	NA	intron (NM_001385207, intron 22 of 24)	intron (NM_001385207, intron 22 of 24)	-12976	NM_002162	3385		NM_002162	ENSG00000076662	ICAM3	CD50|CDW50|ICAM-R	intercellular adhesion molecule 3	protein-coding
144031	chr20	33502351	33502650	+	0	NA	intron (NM_001032999, intron 1 of 10)	AluY|SINE|Alu	12404	NM_001032999	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
9799	chr1	53603671	53604430	+	0	NA	intron (NM_001367484, intron 2 of 10)	MIRb|SINE|MIR	130154	NM_147193	148979		NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
209505	chr7	76957401	76958450	+	0	NA	Intergenic	Intergenic	-22897	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
5404	chr1	25517671	25518030	+	0	NA	Intergenic	Intergenic	-25756	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
97417	chr17	43419071	43419230	+	0	NA	Intergenic	Intergenic	20157	NM_001661	379		NM_001661	ENSG00000175906	ARL4D	ARF4L	ADP ribosylation factor like GTPase 4D	protein-coding
147265	chr20	57450151	57451200	+	0	NA	Intergenic	Intergenic	-57619	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
181805	chr5	52705701	52706150	+	0	NA	Intergenic	UCON26|Unknown|Unknown	-81991	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
130396	chr2	85320571	85320730	+	0	NA	3' UTR (NM_001206841, exon 4 of 4)	3' UTR (NM_001206841, exon 4 of 4)	7339	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
146970	chr20	52540401	52540800	+	0	NA	Intergenic	Intergenic	-80238	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
1901	chr1	6453071	6453430	+	0	NA	intron (NM_031475, intron 10 of 12)	intron (NM_031475, intron 10 of 12)	12923	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
162892	chr3	49389951	49390530	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluSg4|SINE|Alu	21736	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
33106	chr10	110980821	110981080	+	0	NA	intron (NM_001269039, intron 2 of 7)	L2a|LINE|L2	-7976	NR_031614	100313921		NR_031614	ENSG00000221214	MIR548E	MIRN548E|hsa-mir-548e	microRNA 548e	ncRNA
73979	chr15	51974301	51974500	+	0	NA	Intergenic	AluY|SINE|Alu	-2599	NM_001286430	123169		NM_138792	ENSG00000166477	LEO1	RDL	LEO1 homolog, Paf1/RNA polymerase II complex component	protein-coding
238976	chrX	155457921	155459330	+	0	NA	promoter-TSS (NM_001007523)	promoter-TSS (NM_001007523)	-5	NM_001007524	474384		NM_001007524	ENSG00000277150	F8A3	HAP40	coagulation factor VIII associated 3	protein-coding
144304	chr20	34718471	34718630	+	0	NA	intron (NM_001242539, intron 11 of 11)	AluSz|SINE|Alu	13831	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
182614	chr5	66170371	66170530	+	0	NA	intron (NM_139168, intron 9 of 12)	intron (NM_139168, intron 9 of 12)	25615	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
106598	chr18	22229001	22229200	+	0	NA	Intergenic	MIRc|SINE|MIR	59511	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
120918	chr19	45640201	45640430	+	0	NA	promoter-TSS (NM_001352054)	promoter-TSS (NM_001352054)	-918	NM_012155	24139		NM_012155	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	EMAP like 2	protein-coding
191229	chr6	5809571	5810080	+	0	NA	Intergenic	Intergenic	-114553	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
12081	chr1	99728801	99729030	+	0	NA	intron (NM_001361041, intron 8 of 16)	MER135|DNA|DNA	-15962	NR_031666	100302152		NR_031666	ENSG00000221669	MIR548N	MIRN548N|hsa-mir-548n	microRNA 548n	ncRNA
156971	chr22	42441221	42441480	+	0	NA	Intergenic	Intergenic	-3364	NM_001371362	150372		NM_145912	ENSG00000235568	NFAM1	CNAIP	NFAT activating protein with ITAM motif 1	protein-coding
204896	chr7	6084671	6085030	+	0	NA	Intergenic	AluSx|SINE|Alu	-20099	NM_032172	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
220070	chr8	93935671	93936550	+	0	NA	Intergenic	LTR62|LTR|ERVL	19163	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
18845	chr1	167711121	167711480	+	0	NA	Intergenic	Intergenic	-10682	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
198344	chr6	104859021	104860400	+	0	NA	promoter-TSS (NM_001321083)	promoter-TSS (NM_001321083)	-164	NM_001321083	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
169382	chr3	160451251	160451350	+	0	NA	intron (NR_148403, intron 1 of 20)	AluSx1|SINE|Alu	-1462	NR_148402	100174949		NR_148401	ENSG00000248710	TRIM59-IFT80	IFT80-L	TRIM59-IFT80 readthrough (NMD candidate)	ncRNA
184260	chr5	96712021	96712550	+	0	NA	intron (NM_173060, intron 1 of 28)	MIR|SINE|MIR	9625	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
36755	chr11	9361621	9361950	+	0	NA	Intergenic	HAL1|LINE|L1	-22867	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
222843	chr8	142615571	142616100	+	0	NA	Intergenic	Intergenic	-1356	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
154030	chr22	30453851	30454230	+	0	NA	intron (NM_001376914, intron 12 of 12)	intron (NM_001376914, intron 12 of 12)	17977	NM_174975	266629		NM_174975	ENSG00000100012	SEC14L3	TAP2	SEC14 like lipid binding 3	protein-coding
234108	chrX	9464751	9465500	+	0	NA	promoter-TSS (NM_005647)	promoter-TSS (NM_005647)	67	NM_005647	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
125556	chr2	15612371	15612730	+	0	NA	intron (NM_004939, intron 13 of 25)	SVA_D|Retroposon|SVA	20682	NM_004939	1653		NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding
182713	chr5	68243401	68244000	+	0	NA	intron (NM_181523, intron 2 of 15)	L2b|LINE|L2	27944	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
185924	chr5	132868921	132870130	+	0	NA	TTS (NM_014402)	TTS (NM_014402)	-2641	NM_001288825	2661		NM_005260	ENSG00000164404	GDF9	POF14	growth differentiation factor 9	protein-coding
5094	chr1	24747901	24748650	+	0	NA	intron (NM_013943, intron 1 of 5)	intron (NM_013943, intron 1 of 5)	2828	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
164721	chr3	68089771	68089930	+	0	NA	intron (NM_213609, intron 2 of 4)	intron (NM_213609, intron 2 of 4)	85603	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
190174	chr5	178154951	178155250	+	0	NA	Intergenic	Intergenic	-1140	NM_001034833	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
66580	chr14	63479671	63479830	+	0	NA	intron (NM_006246, intron 2 of 13)	intron (NM_006246, intron 2 of 13)	28488	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
119285	chr19	39719221	39719680	+	0	NA	Intergenic	L1PA4|LINE|L1	14969	NM_020129	56891		NM_020129	ENSG00000006659	LGALS14	CLC2|PPL13	galectin 14	protein-coding
179612	chr4	185597571	185597880	+	0	NA	intron (NM_021069, intron 18 of 20)	intron (NM_021069, intron 18 of 20)	59021	NM_001145675	8470		NM_003603	ENSG00000154556	SORBS2	ARGBP2|PRO0618	sorbin and SH3 domain containing 2	protein-coding
45998	chr11	121539001	121539200	+	0	NA	intron (NM_003105, intron 12 of 47)	L3|LINE|CR1	-57311	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
134439	chr2	143147971	143148380	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	18756	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
204437	chr7	3299601	3299880	+	0	NA	Intergenic	Intergenic	-1512	NM_152744	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
65415	chr14	50827371	50827600	+	0	NA	intron (NM_020921, intron 2 of 30)	AluSc8|SINE|Alu	3636	NM_182946	51199		NM_016350	ENSG00000100503	NIN	SCKL7	ninein	protein-coding
28074	chr10	43324221	43324480	+	0	NA	Intergenic	AluSz6|SINE|Alu	-47286	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
91608	chr17	5329921	5330380	+	0	NA	intron (NM_001083585, intron 2 of 16)	intron (NM_001083585, intron 2 of 16)	47866	NM_001083585	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
114122	chr19	11155571	11156850	+	0	NA	promoter-TSS (NM_182513)	promoter-TSS (NM_182513)	-398	NM_001317032	147841		NM_182513	ENSG00000161888	SPC24	SPBC24	SPC24 component of NDC80 kinetochore complex	protein-coding
181661	chr5	50426921	50427180	+	0	NA	intron (NM_198449, intron 2 of 8)	MER65C|LTR|ERV1	14238	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
8514	chr1	40977221	40977830	+	0	NA	Intergenic	Intergenic	-2171	NR_125440	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
70640	chr14	102915371	102915530	+	0	NA	Intergenic	Intergenic	-7213	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
170821	chr3	189630721	189631250	+	0	NA	promoter-TSS (NM_001114978)	promoter-TSS (NM_001114978)	-404	NM_001329148	8626		NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
167847	chr3	134199871	134200200	+	0	NA	intron (NM_001005861, intron 6 of 14)	LTR12|LTR|ERV1	50709	NM_001005861	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
46870	chr11	133948041	133949430	+	0	NA	intron (NM_001277285, intron 1 of 19)	intron (NM_001277285, intron 1 of 19)	8233	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
228726	chr9	109122301	109122500	+	0	NA	Intergenic	Intergenic	-2453	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
126032	chr2	25358821	25359080	+	0	NA	Intergenic	MIRb|SINE|MIR	-16360	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
205490	chr7	17863501	17863700	+	0	NA	intron (NM_015132, intron 9 of 25)	L1MA4|LINE|L1	76894	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
215214	chr7	155998351	155998650	+	0	NA	Intergenic	Intergenic	35943	NR_168379	389602		NM_001291913	ENSG00000204876	LOC389602	-	uncharacterized LOC389602	ncRNA
174829	chr4	48275271	48275530	+	0	NA	Intergenic	L2a|LINE|L2	-5562	NM_003215	7006		NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
47344	chr12	1842471	1842630	+	0	NA	intron (NM_172364, intron 25 of 37)	intron (NM_172364, intron 25 of 37)	21985	NM_001039029	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
56328	chr12	112900301	112900780	+	0	NA	Intergenic	MER117|DNA|hAT-Charlie	-6237	NM_002534	4938		NM_002534	ENSG00000089127	OAS1	E18/E16|IFI-4|IMD100|OIAS|OIASI	2'-5'-oligoadenylate synthetase 1	protein-coding
139380	chr2	221570791	221571800	+	0	NA	intron (NM_004438, intron 1 of 17)	CpG	1009	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
85092	chr16	33304701	33305230	+	0	NA	non-coding (NR_158199, exon 2 of 4).4	non-coding (NR_158199, exon 2 of 4).4	603	NM_001330066	102724127		NM_001330066	ENSG00000278848	TP53TG3F	TP53TG3|TP53TG3B|TP53TG3C|TP53TG3D|TP53TG3E	TP53 target 3 family member F	protein-coding
58709	chr12	132568251	132568750	+	0	NA	intron (NM_001382740, intron 6 of 11)	intron (NM_001382740, intron 6 of 11)	-13497	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
187513	chr5	142391451	142391550	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	66207	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
190620	chr5	181188101	181189200	+	0	NA	Intergenic	Intergenic	3258	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
20285	chr1	196828051	196828150	+	0	NA	exon (NM_001379310, exon 3 of 5)	exon (NM_001379310, exon 3 of 5)	8369	NM_001379309	3078		NM_002113	ENSG00000244414	CFHR1	CFHL|CFHL1|CFHL1P|CFHR1P|FHL-1|FHR-1|FHR1|H36|H36-1|H36-2|HFL1|HFL2	complement factor H related 1	protein-coding
202958	chr6	161226121	161227130	+	0	NA	intron (NM_020133, intron 2 of 8)	intron (NM_020133, intron 2 of 8)	47436	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
116352	chr19	17865801	17866800	+	0	NA	Intergenic	Intergenic	3712	NR_000012	26780		NR_000012	ENSG00000207166	SNORA68	RNU68|SNORA68A|U68	small nucleolar RNA, H/ACA box 68	snoRNA
132890	chr2	111316321	111316580	+	0	NA	intron (NR_136161, intron 3 of 5)	intron (NR_136161, intron 3 of 5)	4636	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
65632	chr14	52305551	52306050	+	0	NA	Intergenic	AluY|SINE|Alu	-8512	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
170243	chr3	184226971	184228030	+	0	NA	Intergenic	Intergenic	-2853	NM_138345	90113		NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
167341	chr3	128752701	128753050	+	0	NA	intron (NM_004637, intron 1 of 5)	Charlie1|DNA|hAT-Charlie	26692	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
160729	chr3	32443301	32443810	+	0	NA	intron (NM_181472, intron 2 of 3)	L1MB8|LINE|L1	51702	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
128774	chr2	62216301	62216500	+	0	NA	intron (NM_001319075, intron 1 of 1)	AluJo|SINE|Alu	879	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
239037	chrY	7085321	7085880	+	0	NA	intron (NM_134258, intron 13 of 17)	intron (NM_134258, intron 13 of 17)	174903	NM_033284	90665		NM_033284	ENSG00000092377	TBL1Y	DFNY2|TBL1	transducin beta like 1 Y-linked	protein-coding
49416	chr12	22637151	22637450	+	0	NA	intron (NM_001039481, intron 1 of 2)	L1ME3A|LINE|L1	12129	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
109039	chr18	79741851	79742350	+	0	NA	intron (NM_004715, intron 12 of 12)	intron (NM_004715, intron 12 of 12)	60670	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
130431	chr2	85394551	85394850	+	0	NA	TTS (NM_001256140)	TTS (NM_001256140)	15132	NM_001320732	822		NM_001747	ENSG00000042493	CAPG	AFCP|HEL-S-66|MCP	capping actin protein, gelsolin like	protein-coding
183356	chr5	77042871	77043630	+	0	NA	intron (NM_018046, intron 5 of 13)	SVA_F|Retroposon|SVA	12846	NM_018046	55109		NM_013303	ENSG00000164252	AGGF1	GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q	angiogenic factor with G-patch and FHA domains 1	protein-coding
74911	chr15	63628401	63628800	+	0	NA	intron (NM_003922, intron 70 of 77)	intron (NM_003922, intron 70 of 77)	-27773	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
170327	chr3	184371471	184371830	+	0	NA	TTS (NM_001177598)	TTS (NM_001177598)	6557	NM_000460	7066		NM_000460	ENSG00000090534	THPO	CAMT2|MGDF|MKCSF|ML|MPLLG|THC9|THCYT1|TPO	thrombopoietin	protein-coding
45064	chr11	117058421	117058880	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	39778	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
205761	chr7	23517971	23518850	+	0	NA	intron (NM_013293, intron 2 of 7)	AluSg|SINE|Alu	13571	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
5340	chr1	25257851	25258350	+	0	NA	intron (NR_135788, intron 1 of 3)	intron (NR_135788, intron 1 of 3)	9825	NR_135777	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
13545	chr1	115098001	115098200	+	0	NA	Intergenic	L1PREC2|LINE|L1	-8597	NM_005725	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
27221	chr10	28680021	28680530	+	0	NA	intron (NM_012342, intron 1 of 2)	intron (NM_012342, intron 1 of 2)	2754	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
202608	chr6	158722671	158723230	+	0	NA	intron (NM_001318745, intron 7 of 14)	AluSx1|SINE|Alu	41803	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
138924	chr2	218218681	218219380	+	0	NA	intron (NM_152862, intron 2 of 10)	intron (NM_152862, intron 2 of 10)	1633	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
52311	chr12	54882171	54882330	+	0	NA	Intergenic	L2|LINE|L2	27734	NM_058173	118430		NM_058173	ENSG00000172551	MUCL1	SBEM	mucin like 1	protein-coding
179966	chr5	843121	844250	+	0	NA	exon (NM_024786, exon 4 of 13)	exon (NM_024786, exon 4 of 13)	7301	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
103740	chr17	78889671	78889830	+	0	NA	TTS (NM_001243541)	TTS (NM_001243541)	13451	NM_001243540	100653515		NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
79244	chr16	394921	395180	+	0	NA	Intergenic	AluY|SINE|Alu	-1679	NM_001286436	4833		NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
139234	chr2	219307951	219309000	+	0	NA	intron (NM_001199763, intron 1 of 21)	intron (NM_001199763, intron 1 of 21)	495	NM_001199764	5798		NM_002846	ENSG00000054356	PTPRN	IA-2|IA-2/PTP|IA2|ICA512|R-PTP-N	protein tyrosine phosphatase receptor type N	protein-coding
201923	chr6	151393971	151394550	+	0	NA	Intergenic	Intergenic	-2701	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
226939	chr9	79621301	79621500	+	0	NA	intron (NM_001351563, intron 5 of 17)	L3|LINE|CR1	48223	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
87687	chr16	74656121	74656380	+	0	NA	intron (NM_001370540, intron 3 of 13)	AluYc|SINE|Alu	10627	NM_018124	55159		NM_018124	ENSG00000168411	RFWD3	FANCW|RNF201	ring finger and WD repeat domain 3	protein-coding
34656	chr10	133333501	133334400	+	0	NA	intron (NM_015722, intron 1 of 5)	intron (NM_015722, intron 1 of 5)	2946	NM_015722	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
186480	chr5	138070601	138070800	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-13192	NM_058244	7478		NM_031933	ENSG00000061492	WNT8A	WNT8D	Wnt family member 8A	protein-coding
231518	chr9	131420871	131421380	+	0	NA	intron (NM_013318, intron 1 of 31)	MER58A|DNA|hAT-Charlie	27039	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
51886	chr12	53505871	53506430	+	0	NA	TTS (NM_001366559)	TTS (NM_001366559)	1334	NM_001320296	8620		NM_003717	ENSG00000139574	NPFF	FMRFAL	neuropeptide FF-amide peptide precursor	protein-coding
155097	chr22	37579851	37580480	+	0	NA	promoter-TSS (NM_006498)	promoter-TSS (NM_006498)	-78	NM_006498	3957		NM_006498	ENSG00000100079	LGALS2	HL14	galectin 2	protein-coding
115017	chr19	14078071	14078230	+	0	NA	Intergenic	Intergenic	4789	NR_106715	102466515		NR_106715	ENSG00000284081	MIR1199	hsa-mir-1199	microRNA 1199	ncRNA
76313	chr15	74380501	74380900	+	0	NA	intron (NR_146881, intron 1 of 3)	intron (NR_146881, intron 1 of 3)	1618	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
129445	chr2	69499351	69499450	+	0	NA	intron (NM_001371575, intron 16 of 20)	intron (NM_001371575, intron 16 of 20)	20771	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
36275	chr11	3799271	3799430	+	0	NA	intron (NR_027017, intron 1 of 7)	AluSx1|SINE|Alu	1452	NM_001346401	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
140039	chr2	231200151	231200450	+	0	NA	intron (NM_001352755, intron 1 of 20)	L2a|LINE|L2	1669	NM_001352755	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
1287	chr1	2329921	2330680	+	0	NA	intron (NM_024848, intron 12 of 13)	intron (NM_024848, intron 12 of 13)	22361	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
223388	chr8	143913801	143916100	+	0	NA	TTS (NM_000445)	TTS (NM_000445)	24647	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
238588	chrX	153888021	153888680	+	0	NA	intron (NR_130768, intron 6 of 6)	intron (NR_130768, intron 6 of 6)	-2177	NM_001278116	3897		NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|HYCX|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
96905	chr17	42127501	42127700	+	0	NA	intron (NM_004583, intron 4 of 5)	AluJb|SINE|Alu	4796	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
222221	chr8	133072971	133074030	+	0	NA	intron (NM_001045557, intron 1 of 7)	AluSq|SINE|Alu	-13146	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
208222	chr7	65259571	65259730	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-114149	NM_001287532	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
70011	chr14	100077521	100077830	+	0	NA	intron (NM_016337, intron 1 of 13)	MER5A|DNA|hAT-Charlie	12253	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
80236	chr16	2194751	2195280	+	0	NA	intron (NM_020764, intron 1 of 19)	MIRb|SINE|MIR	1590	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
209932	chr7	92583901	92584200	+	0	NA	intron (NM_152789, intron 1 of 10)	AluSx1|SINE|Alu	5999	NM_001288584	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
128673	chr2	61470201	61472190	+	0	NA	promoter-TSS (NM_014709)	promoter-TSS (NM_014709)	-108	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
235503	chrX	47146671	47147650	+	0	NA	intron (NM_001204468, intron 1 of 23)	intron (NM_001204468, intron 1 of 23)	1939	NM_152856	8241		NM_005676	ENSG00000182872	RBM10	DXS8237E|GPATC9|GPATCH9|MINAS-60|S1-1|TARPS|ZRANB5	RNA binding motif protein 10	protein-coding
5938	chr1	26880201	26880600	+	0	NA	intron (NM_018066, intron 4 of 4)	AluSc5|SINE|Alu	9883	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
157136	chr22	42799501	42800100	+	0	NA	intron (NM_001142293, intron 13 of 14)	intron (NM_001142293, intron 13 of 14)	57473	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
54192	chr12	79842351	79842800	+	0	NA	intron (NM_001143885, intron 4 of 25)	intron (NM_001143885, intron 4 of 25)	71336	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
166255	chr3	112358121	112358780	+	0	NA	intron (NM_001318826, intron 5 of 5)	intron (NM_001318826, intron 5 of 5)	25294	NM_005944	4345		NM_005944	ENSG00000091972	CD200	MOX1|MOX2|MRC|OX-2	CD200 molecule	protein-coding
37326	chr11	14822901	14823100	+	0	NA	intron (NM_001363569, intron 7 of 15)	L1PA13|LINE|L1	68671	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
67563	chr14	71346501	71347000	+	0	NA	intron (NM_001354287, intron 2 of 23)	L1MB8|LINE|L1	26274	NM_015556	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
127991	chr2	46940401	46941900	+	0	NA	promoter-TSS (NM_001288955)	promoter-TSS (NM_001288955)	-74	NM_001288955	57217		NM_020458	ENSG00000068724	TTC7A	GIDID|MINAT|TTC7	tetratricopeptide repeat domain 7A	protein-coding
188335	chr5	151245171	151245330	+	0	NA	Intergenic	MER51A|LTR|ERV1	-7935	NM_000405	2760		NM_000405	ENSG00000196743	GM2A	GM2-AP|GM2AP|SAP-3	ganglioside GM2 activator	protein-coding
17989	chr1	160516601	160516980	+	0	NA	intron (NM_001184714, intron 1 of 7)	L1PA10|LINE|L1	6465	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
179998	chr5	946201	946400	+	0	NA	Intergenic	Intergenic	51040	NR_104614	100506688		NM_001242737	ENSG00000215246	LINC02982	-	long intergenic non-protein coding RNA 2982	ncRNA
146699	chr20	50548151	50548450	+	0	NA	intron (NM_001278618, intron 1 of 8)	L1MEi|LINE|L1	-37486	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
208197	chr7	65035851	65036280	+	0	NA	Intergenic	AluJr|SINE|Alu	-2289	NR_033416	643180		NR_033416	ENSG00000290860	CCT6P3	CCT6-3P	chaperonin containing TCP1 subunit 6 pseudogene 3	pseudo
75681	chr15	67827971	67828400	+	0	NA	intron (NM_001365915, intron 2 of 8)	CpG-8353	2676	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
71689	chr15	20105601	20106150	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-176869	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
216953	chr8	22996171	22996630	+	0	NA	promoter-TSS (NM_001374791)	promoter-TSS (NM_001374791)	-372	NM_001374791	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
138199	chr2	202671371	202671730	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	36581	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
165828	chr3	105835651	105835950	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	31791	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
16592	chr1	155043301	155043500	+	0	NA	exon (NM_001143687, exon 9 of 16)	exon (NM_001143687, exon 9 of 16)	7765	NR_040772	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
239210	chrY	12924151	12924250	+	0	NA	Intergenic	HUERS-P2-int|LTR|ERV1	18495	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
115384	chr19	15252521	15252980	+	0	NA	TTS (NM_001330384)	TTS (NM_001330384)	-19703	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
17238	chr1	156319601	156320000	+	0	NA	intron (NR_036564, intron 8 of 14)	intron (NR_036564, intron 8 of 14)	-17514	NM_144627	128229		NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding
32247	chr10	101842771	101844500	+	0	NA	5' UTR (NM_014591, exon 1 of 10)	5' UTR (NM_014591, exon 1 of 10)	165	NM_014591	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
142035	chr20	1676701	1677350	+	0	NA	Intergenic	MIRb|SINE|MIR	-19246	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
157614	chr22	46051001	46051630	+	0	NA	non-coding (NR_165243, exon 2 of 2)	non-coding (NR_165243, exon 2 of 2)	-2531	NR_027034	150381		NR_027034		PRR34-AS1	-	PRR34 antisense RNA 1	ncRNA
163188	chr3	50207051	50207350	+	0	NA	intron (NM_006841, intron 1 of 15)	intron (NM_006841, intron 1 of 15)	1929	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
9065	chr1	44829521	44830380	+	0	NA	exon (NM_003738, exon 7 of 22)	exon (NM_003738, exon 7 of 22)	12994	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
117694	chr19	28498511	28498730	+	0	NA	intron (NR_110759, intron 5 of 9)	(AT)n|Simple_repeat|Simple_repeat	-108068	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
56964	chr12	120532351	120532450	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1956	NM_014868	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
40300	chr11	63869271	63870500	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	-18652	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
38649	chr11	46371951	46372050	+	0	NA	intron (NM_001199266, intron 9 of 30)	intron (NM_001199266, intron 9 of 30)	-4402	NR_039837	100616368		NR_039837	ENSG00000264102	MIR4688	mir-4688	microRNA 4688	ncRNA
216603	chr8	22050901	22052400	+	0	NA	intron (NM_001323382, intron 1 of 15)	intron (NM_001323382, intron 1 of 15)	-1905	NM_001114137	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
140333	chr2	232540521	232540780	+	0	NA	exon (NM_005199, exon 4 of 12)	exon (NM_005199, exon 4 of 12)	958	NM_005199	1146		NM_005199	ENSG00000196811	CHRNG	ACHRG	cholinergic receptor nicotinic gamma subunit	protein-coding
159483	chr3	14151521	14151900	+	0	NA	intron (NR_148951, intron 9 of 13)	intron (NR_148951, intron 9 of 13)	26658	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
138042	chr2	201413221	201413480	+	0	NA	intron (NM_015049, intron 2 of 15)	intron (NM_015049, intron 2 of 15)	38108	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
196112	chr6	42375321	42375580	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	76601	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
53483	chr12	66171071	66171230	+	0	NA	Intergenic	Intergenic	-1078	NM_001282610	51643		NM_016056	ENSG00000155957	TMBIM4	CGI-119|GAAP|LFG4|S1R|ZPRO	transmembrane BAX inhibitor motif containing 4	protein-coding
16261	chr1	153979271	153979430	+	0	NA	Intergenic	AluSp|SINE|Alu	-1676	NM_006694	10899		NM_006694	ENSG00000143543	JTB	HJTB|HSPC222|PAR|hJT	jumping translocation breakpoint	protein-coding
101322	chr17	66665271	66665630	+	0	NA	intron (NM_002737, intron 5 of 16)	intron (NM_002737, intron 5 of 16)	-121622	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
33288	chr10	114550501	114551130	+	0	NA	intron (NM_001322883, intron 4 of 20)	intron (NM_001322883, intron 4 of 20)	-23902	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
82155	chr16	14840421	14840680	+	0	NA	intron (NM_014287, intron 2 of 30)	AluSx1|SINE|Alu	6829	NM_014287	23420		NM_014287	ENSG00000103512	NOMO1	Nomo|PM5	NODAL modulator 1	protein-coding
115230	chr19	14505221	14505950	+	0	NA	Intergenic	L2|LINE|L2	-9436	NM_202494	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
143802	chr20	32462001	32462400	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	21290	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
214406	chr7	149813001	149813600	+	0	NA	intron (NR_163594, intron 66 of 102)	intron (NR_163594, intron 66 of 102)	-25075	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
162725	chr3	49015771	49016680	+	0	NA	TTS (NM_018031)	TTS (NM_018031)	2355	NM_001009996	55152		NM_018114	ENSG00000178149	DALRD3	DEE86|EIEE86	DALR anticodon binding domain containing 3	protein-coding
88314	chr16	84194301	84195350	+	0	NA	intron (NR_147175, intron 3 of 4)	intron (NR_147175, intron 3 of 4)	2228	NR_147175	654780		NM_001039504	ENSG00000250685	LOC654780	SFPQ	splicing factor proline/glutamine-rich	ncRNA
33939	chr10	124617751	124618200	+	0	NA	Intergenic	Intergenic	-86053	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
238949	chrX	154973771	154973930	+	0	NA	intron (NM_000132, intron 6 of 25)	AluSz|SINE|Alu	48873	NM_000132	2157		NM_000132	ENSG00000185010	F8	AHF|DXS1253E|F8B|F8C|FVIII|HEMA|THPH13	coagulation factor VIII	protein-coding
108947	chr18	79504451	79505700	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-74207	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
7106	chr1	32122101	32123030	+	0	NA	intron (NM_012316, intron 1 of 13)	FLAM_C|SINE|Alu	14509	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
168454	chr3	142993951	142994400	+	0	NA	intron (NR_125393, intron 3 of 4)	intron (NR_125393, intron 3 of 4)	7292	NR_034032	100289361		NR_034032	ENSG00000268129	LOC100289361	-	uncharacterized LOC100289361	ncRNA
123218	chr19	52784671	52785350	+	0	NA	intron (NM_001321866, intron 1 of 5)	AluJo|SINE|Alu	1781	NM_198457	162966		NM_198457	ENSG00000189190	ZNF600	KR-ZNF1	zinc finger protein 600	protein-coding
226751	chr9	76191521	76191780	+	0	NA	intron (NM_001372043, intron 20 of 37)	intron (NM_001372043, intron 20 of 37)	202776	NM_018339	55312		NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
216704	chr8	22231901	22232180	+	0	NA	promoter-TSS (NM_014759)	promoter-TSS (NM_014759)	59	NM_014759	9796		NM_014759	ENSG00000168490	PHYHIP	DYRK1AP3|PAHX-AP|PAHXAP1	phytanoyl-CoA 2-hydroxylase interacting protein	protein-coding
36622	chr11	7436551	7436900	+	0	NA	TTS (NR_103855)	TTS (NR_103855)	29110	NR_103855	100506258		NR_103855	ENSG00000251364	SYT9-AS1	-	SYT9 antisense RNA 1	ncRNA
117793	chr19	29841501	29842250	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	29884	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
157713	chr22	46431071	46431230	+	0	NA	intron (NM_001378328, intron 5 of 34)	intron (NM_001378328, intron 5 of 34)	95436	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
109333	chr19	600771	601450	+	0	NA	intron (NM_001194, intron 1 of 7)	AluSg|SINE|Alu	11229	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
93511	chr17	19004031	19006550	+	0	NA	promoter-TSS (NM_001039999)	promoter-TSS (NM_001039999)	-526	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
59303	chr13	24271561	24273480	+	0	NA	intron (NM_001286795, intron 1 of 9)	intron (NM_001286795, intron 1 of 9)	1770	NM_001286793	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
227141	chr9	86281951	86283450	+	0	NA	promoter-TSS (NM_030940)	promoter-TSS (NM_030940)	-162	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
170570	chr3	186808401	186808600	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-1805	NM_181573	5984		NM_002916	ENSG00000163918	RFC4	A1|RFC37	replication factor C subunit 4	protein-coding
120692	chr19	45160851	45161150	+	0	NA	promoter-TSS (NM_198478)	promoter-TSS (NM_198478)	-850	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
236986	chrX	101485201	101486050	+	0	NA	intron (NR_045861, intron 1 of 12)	intron (NR_045861, intron 1 of 12)	169	NR_045864	100131755		NM_152583	ENSG00000196440	ARMCX4	CXorf35|GASP4	armadillo repeat containing X-linked 4	protein-coding
100324	chr17	59842911	59843550	+	0	NA	TTS (NM_001329400)	TTS (NM_001329400)	1964	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
193343	chr6	30211201	30211550	+	0	NA	intron (NM_003449, intron 1 of 9).3	intron (NM_003449, intron 1 of 9).3	2031	NM_003449	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
52619	chr12	56260851	56261150	+	0	NA	Intergenic	Intergenic	-2616	NM_173595	283373		NM_173595	ENSG00000139645	ANKRD52	ANKRD33	ankyrin repeat domain 52	protein-coding
50904	chr12	49289671	49289830	+	0	NA	Intergenic	AluSc|SINE|Alu	-5397	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
74152	chr15	55271321	55271750	+	0	NA	promoter-TSS (NM_183236)	promoter-TSS (NM_183236)	-613	NM_183236	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
167868	chr3	134485001	134487450	+	0	NA	promoter-TSS (NM_001353124)	promoter-TSS (NM_001353124)	52	NM_001353125	80254		NM_025180	ENSG00000182923	CEP63	SCKL6	centrosomal protein 63	protein-coding
148980	chr21	13985501	13985700	+	0	NA	Intergenic	(TGCCC)n|Simple_repeat|Simple_repeat	-5156	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
16796	chr1	155548171	155548330	+	0	NA	intron (NM_018489, intron 1 of 27)	AluSx|SINE|Alu	-13792	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
13458	chr1	114509321	114509580	+	0	NA	intron (NM_033020, intron 1 of 18)	MER46C|DNA|TcMar-Tigger	1753	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
223626	chr8	144324601	144324800	+	0	NA	intron (NM_012079, intron 1 of 16)	intron (NM_012079, intron 1 of 16)	2152	NM_012079	8694		NM_012079	ENSG00000185000	DGAT1	ARAT|ARGP1|DGAT|DIAR7	diacylglycerol O-acyltransferase 1	protein-coding
58217	chr12	127293571	127293750	+	0	NA	Intergenic	LTR16D2|LTR|ERVL	-9377	NR_146537	105370065		NR_146537		LINC02376	-	long intergenic non-protein coding RNA 2376	ncRNA
187132	chr5	140431371	140431900	+	0	NA	intron (NM_020690, intron 1 of 35)	MIRc|SINE|MIR	29802	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
67499	chr14	70942621	70943200	+	0	NA	intron (NM_014982, intron 1 of 35)	THE1C|LTR|ERVL-MaLR	35451	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
46360	chr11	126062121	126063650	+	0	NA	promoter-TSS (NM_001378964)	promoter-TSS (NM_001378964)	-19	NM_001378964	50937		NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|Ihog|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
169701	chr3	172094671	172095430	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	54519	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
151911	chr22	18969321	18969580	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-1048	NR_045121	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
123120	chr19	51703051	51703230	+	0	NA	intron (NR_024330, intron 4 of 7)	CpG-15042	-9684	NR_108100	102238594		NR_108100	ENSG00000269959	SPACA6-AS1	LINC01129|SPACA6P-AS	SPACA6 antisense RNA 1	ncRNA
111991	chr19	4916261	4917800	+	0	NA	intron (NM_013282, intron 1 of 15)	intron (NM_013282, intron 1 of 15)	6663	NM_013282	29128		NM_013282	ENSG00000276043	UHRF1	ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95	ubiquitin like with PHD and ring finger domains 1	protein-coding
215857	chr8	7353971	7354130	+	0	NA	intron (NR_027423, intron 1 of 6)	intron (NR_027423, intron 1 of 6)	1313	NR_027423	100128890		NR_027423	ENSG00000215374	FAM66B	FAM66E	family with sequence similarity 66 member B	ncRNA
193227	chr6	29885671	29885830	+	0	NA	Intergenic	AluYa5|SINE|Alu	-1823	NR_001434	3136		NR_001434		HLA-H	HLAHP	major histocompatibility complex, class I, H (pseudogene)	pseudo
4312	chr1	20322771	20323480	+	0	NA	intron (NM_001039500, intron 7 of 21)	MIRb|SINE|MIR	32250	NM_001039500	127731		NM_144623	ENSG00000158816	VWA5B1	-	von Willebrand factor A domain containing 5B1	protein-coding
125880	chr2	24613211	24614130	+	0	NA	intron (NM_147233, intron 1 of 20)	L1PA15-16|LINE|L1	29193	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
85104	chr16	33870921	33871230	+	0	NA	Intergenic	Intergenic	101698	NR_130772	104644205		NR_130771		ENPP7P13	DUNQU1	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13	pseudo
141910	chr20	968051	968380	+	0	NA	intron (NM_001029871, intron 1 of 4)	intron (NM_001029871, intron 1 of 4)	34096	NM_001029871	343637		NM_001029871	ENSG00000101282	RSPO4	C20orf182|CRISTIN4	R-spondin 4	protein-coding
23711	chr1	231675271	231675430	+	0	NA	intron (NM_001164556, intron 1 of 4)	intron (NM_001164556, intron 1 of 4)	48535	NM_001164555	27185		NM_018662	ENSG00000162946	DISC1	C1orf136|SCZD9	DISC1 scaffold protein	protein-coding
155079	chr22	37559471	37559630	+	0	NA	promoter-TSS (NM_152243)	promoter-TSS (NM_152243)	-930	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
178022	chr4	139419371	139419600	+	0	NA	Intergenic	LTR40A1|LTR|ERVL	34556	NR_159964	107984036		NR_159963		RAB33B-AS1	-	RAB33B antisense RNA 1	ncRNA
46395	chr11	126310351	126311280	+	0	NA	intron (NM_014026, intron 2 of 5)	intron (NM_014026, intron 2 of 5)	6755	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
158981	chr3	10263371	10264400	+	0	NA	intron (NM_014760, intron 3 of 7)	HAL1|LINE|L1	15426	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
114246	chr19	11508351	11508450	+	0	NA	intron (NM_001142465, intron 2 of 5)	AluJo|SINE|Alu	-2561	NM_138783	115950		NM_138783	ENSG00000161914	ZNF653	E430039K05Rik|ZIP67	zinc finger protein 653	protein-coding
121694	chr19	47541451	47542500	+	0	NA	intron (NM_001277075, intron 5 of 16)	L1MB7|LINE|L1	-26912	NR_038456	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
234824	chrX	24168851	24169680	+	0	NA	intron (NM_001178085, intron 4 of 10)	intron (NM_001178085, intron 4 of 10)	19536	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
212459	chr7	128455171	128456650	+	0	NA	promoter-TSS (NM_001098786)	promoter-TSS (NM_001098786)	32	NM_013332	29923		NM_013332	ENSG00000135245	HILPDA	C7orf68|HIG-2|HIG2	hypoxia inducible lipid droplet associated	protein-coding
119102	chr19	39322851	39323650	+	0	NA	Intergenic	MIR|SINE|MIR	-2387	NM_020862	57622		NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
149324	chr21	29031921	29032450	+	0	NA	intron (NM_006447, intron 3 of 17)	L1MD2|LINE|L1	7517	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
59061	chr13	20713871	20714230	+	0	NA	intron (NM_001385224, intron 1 of 1)	intron (NM_001385224, intron 1 of 1)	10351	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
91807	chr17	7041951	7043400	+	0	NA	exon (NM_153357, exon 3 of 4)	exon (NM_153357, exon 3 of 4)	1417	NM_001370553	162515		NM_153357	ENSG00000174326	SLC16A11	MCT 11|MCT11	solute carrier family 16 member 11	protein-coding
89421	chr16	88905271	88906150	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	22195	NR_135194	101927793		NR_135194	ENSG00000259881	LOC101927793	-	uncharacterized LOC101927793	ncRNA
18510	chr1	161768671	161769030	+	0	NA	intron (NM_007348, intron 1 of 15)	AluJr4|SINE|Alu	2530	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
54004	chr12	75458001	75458200	+	0	NA	Intergenic	MER11C|LTR|ERVK	-22655	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
135470	chr2	161310771	161311680	+	0	NA	intron (NM_005805, intron 1 of 11)	AluSx|SINE|Alu	2800	NM_005805	10213		NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	proteasome 26S subunit, non-ATPase 14	protein-coding
204525	chr7	4801071	4801930	+	0	NA	intron (NM_018059, intron 12 of 14)	intron (NM_018059, intron 12 of 14)	-12861	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
191096	chr6	3848751	3849730	+	0	NA	promoter-TSS (NM_012135)	promoter-TSS (NM_012135)	-133	NM_012135	26240		NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
39036	chr11	47774271	47774630	+	0	NA	Intergenic	AluY|SINE|Alu	-7109	NM_001318339	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
81755	chr16	11458451	11458550	+	0	NA	intron (NM_001370704, intron 27 of 66)	AluSq2|SINE|Alu	-6760	NR_110907	101927131		NR_110907	ENSG00000262999	LOC101927131	-	uncharacterized LOC101927131	ncRNA
153352	chr22	24421121	24422050	+	0	NA	intron (NR_103546, intron 18 of 19)	intron (NR_103546, intron 18 of 19)	-2012	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
24259	chr1	236397201	236397980	+	0	NA	intron (NM_080738, intron 1 of 5)	L3|LINE|CR1	2177	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
126266	chr2	27136771	27137100	+	0	NA	TTS (NM_178553)	TTS (NM_178553)	-2260	NR_138479	10113		NM_013388	ENSG00000138073	PREB	SEC12	prolactin regulatory element binding	protein-coding
239128	chrY	11308751	11308930	+	0	NA	Intergenic	LSAU|Satellite|Satellite	1112750	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
10201	chr1	61925151	61925250	+	0	NA	intron (NM_176877, intron 26 of 42)	AluYc|SINE|Alu	79125	NR_162146	113219465		NR_162146		MIR12132	-	microRNA 12132	ncRNA
121793	chr19	47868871	47869250	+	0	NA	Intergenic	Intergenic	17255	NM_003167	6822		NM_003167	ENSG00000105398	SULT2A1	DHEA-ST|DHEA-ST8|DHEAS|HST|ST2|ST2A1|ST2A3|STD|SULT2A3|hSTa	sulfotransferase family 2A member 1	protein-coding
152964	chr22	23065851	23066250	+	0	NA	intron (NM_014433, intron 4 of 6)	intron (NM_014433, intron 4 of 6)	-4469	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
61332	chr13	50529701	50529900	+	0	NA	Intergenic	L1ME1|LINE|L1	-2351	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
202345	chr6	157563151	157563250	+	0	NA	intron (NM_024630, intron 2 of 8)	intron (NM_024630, intron 2 of 8)	34068	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
211141	chr7	102544501	102545430	+	0	NA	promoter-TSS (NM_001363506)	promoter-TSS (NM_001363506)	-177	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
202870	chr6	159928701	159928900	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	37812	NM_001366704	4142		NM_002377	ENSG00000130368	MAS1	MAS|MGRA	MAS1 proto-oncogene, G protein-coupled receptor	protein-coding
165	chr1	606721	607180	+	0	NA	Intergenic	Intergenic	22059	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
68028	chr14	75160651	75161150	+	0	NA	intron (NM_006827, intron 1 of 4)	AluSx1|SINE|Alu	15712	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
200043	chr6	129735251	129735900	+	0	NA	Intergenic	L1ME3B|LINE|L1	-25398	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
175531	chr4	74453171	74453330	+	0	NA	intron (NM_001657, intron 5 of 5)	intron (NM_001657, intron 5 of 5)	8114	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
229205	chr9	114738601	114739200	+	0	NA	Intergenic	MIR3|SINE|MIR	53630	NM_001204344	9966		NM_005118	ENSG00000181634	TNFSF15	TL1|TL1A|TNLG1B|VEGI|VEGI192A	TNF superfamily member 15	protein-coding
169639	chr3	171347751	171348050	+	0	NA	intron (NR_027767, intron 2 of 2)	intron (NR_027767, intron 2 of 2)	112505	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
17055	chr1	156096651	156097880	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	14692	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
1194	chr1	2244151	2244500	+	0	NA	intron (NM_003036, intron 1 of 6)	AluSz|SINE|Alu	16006	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
7764	chr1	36178301	36179150	+	0	NA	exon (NM_018067, exon 11 of 17)	exon (NM_018067, exon 11 of 17)	22565	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
175816	chr4	77858501	77859000	+	0	NA	Intergenic	Intergenic	-4080	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
118745	chr19	38319351	38320700	+	0	NA	exon (NM_004823, exon 1 of 3)	exon (NM_004823, exon 1 of 3)	180	NM_004823	9424		NM_004823	ENSG00000099337	KCNK6	K2p6.1|KCNK8|TOSS|TWIK-2|TWIK2	potassium two pore domain channel subfamily K member 6	protein-coding
94065	chr17	27455911	27457780	+	0	NA	exon (NM_001367810, exon 1 of 19)	exon (NM_001367810, exon 1 of 19)	397	NM_001367810	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
541	chr1	1237701	1238680	+	0	NA	Intergenic	Intergenic	5953	NM_080605	126792		NM_080605	ENSG00000176022	B3GALT6	ALGAZ|EDSP2|EDSSPD2|SEMDJL1|beta3GalT6	beta-1,3-galactosyltransferase 6	protein-coding
204847	chr7	5780871	5782080	+	0	NA	intron (NM_001377156, intron 1 of 17)	CpG	188	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
43342	chr11	76626901	76627180	+	0	NA	Intergenic	Intergenic	42898	NM_001370189	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
134849	chr2	148660401	148660730	+	0	NA	intron (NM_015630, intron 1 of 13)	intron (NM_015630, intron 1 of 13)	15814	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
191068	chr6	3370451	3372400	+	0	NA	intron (NM_001382320, intron 1 of 1)	MER58B|DNA|hAT-Charlie	-47275	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
76126	chr15	72526371	72526730	+	0	NA	intron (NM_005744, intron 2 of 13)	AluJr|SINE|Alu	52220	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
207721	chr7	47968821	47969330	+	0	NA	intron (NR_037917, intron 6 of 8)	intron (NR_037917, intron 6 of 8)	10540	NM_001363683	3364		NM_004507	ENSG00000136273	HUS1	hHUS1	HUS1 checkpoint clamp component	protein-coding
200349	chr6	133985901	133986300	+	0	NA	intron (NM_004865, intron 6 of 6)	intron (NM_004865, intron 6 of 6)	32876	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
110271	chr19	1811451	1813530	+	0	NA	promoter-TSS (NM_138813)	promoter-TSS (NM_138813)	-214	NM_138813	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
130347	chr2	85005071	85005400	+	0	NA	intron (NM_020122, intron 1 of 6)	L1MA5|LINE|L1	34074	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
126298	chr2	27242201	27243130	+	0	NA	exon (NM_004341, exon 41 of 44)	exon (NM_004341, exon 41 of 44)	20382	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
143787	chr20	32449971	32450130	+	0	NA	intron (NM_080616, intron 7 of 7)	intron (NM_080616, intron 7 of 7)	33440	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
167437	chr3	129053151	129054030	+	0	NA	Intergenic	Intergenic	-7189	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
196533	chr6	43927671	43928030	+	0	NA	intron (NR_024478, intron 1 of 1)	intron (NR_024478, intron 1 of 1)	36822	NR_024478	100132354		NR_024478	ENSG00000289313	LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
28246	chr10	45580271	45581830	+	0	NA	intron (NM_145021, intron 1 of 6)	intron (NM_145021, intron 1 of 6)	13856	NM_145021	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
199730	chr6	125756021	125756280	+	0	NA	intron (NM_012259, intron 4 of 4)	intron (NM_012259, intron 4 of 4)	6518	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
105256	chr17	82433721	82435080	+	0	NA	intron (NM_001369487, intron 6 of 14)	intron (NM_001369487, intron 6 of 14)	15326	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
37113	chr11	13296721	13296980	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	19060	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
94090	chr17	27609601	27609850	+	0	NA	intron (NM_001367810, intron 15 of 18)	intron (NM_001367810, intron 15 of 18)	-21463	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
130223	chr2	84778801	84779630	+	0	NA	intron (NM_001370, intron 64 of 76)	L1PA16|LINE|L1	101869	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
96229	chr17	39789501	39789730	+	0	NA	intron (NM_001257411, intron 3 of 5)	AluSx1|SINE|Alu	-11390	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
182278	chr5	57225651	57225950	+	0	NA	intron (NM_001127235, intron 3 of 11)	HERVL40-int|LTR|ERVL	11726	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
57940	chr12	123636901	123637100	+	0	NA	intron (NM_001271867, intron 1 of 11)	AluJo|SINE|Alu	3171	NM_001271867	2967		NM_001516	ENSG00000111358	GTF2H3	BTF2|P34|TFB4|TFIIH	general transcription factor IIH subunit 3	protein-coding
167896	chr3	136147271	136147630	+	0	NA	3' UTR (NM_001190447, exon 13 of 13)	3' UTR (NM_001190447, exon 13 of 13)	47018	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
72816	chr15	40106471	40107030	+	0	NA	promoter-TSS (NM_001003942)	promoter-TSS (NM_001003942)	-122	NM_033503	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
42517	chr11	70400171	70400330	+	0	NA	intron (NM_005231, intron 1 of 17)	AluJr|SINE|Alu	1721	NM_005231	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
32589	chr10	103497571	103497730	+	0	NA	intron (NR_120675, intron 2 of 3)	intron (NR_120675, intron 2 of 3)	3945	NM_004210	9148		NM_004210	ENSG00000107954	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding
43708	chr11	86024151	86024850	+	0	NA	intron (NM_007166, intron 3 of 19)	intron (NM_007166, intron 3 of 19)	44584	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
90965	chr17	2690821	2691080	+	0	NA	intron (NM_015229, intron 25 of 25)	intron (NM_015229, intron 25 of 25)	1969	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
71381	chr14	105504501	105505550	+	0	NA	Intergenic	AluSc8|SINE|Alu	13776	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
75389	chr15	65746471	65746900	+	0	NA	intron (NM_001376919, intron 4 of 31)	intron (NM_001376919, intron 4 of 31)	-27353	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
143619	chr20	31736171	31737230	+	0	NA	Intergenic	AluY|SINE|Alu	-2590	NM_012112	22974		NM_012112	ENSG00000088325	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2 microtubule nucleation factor	protein-coding
193049	chr6	28597521	28597980	+	0	NA	intron (NM_001329616, intron 1 of 5)	intron (NM_001329616, intron 1 of 5)	-10452	NM_052923	114821		NM_052923	ENSG00000232040	SCAND3	Buster4|FAM200D|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
178944	chr4	159077401	159078400	+	0	NA	Intergenic	Intergenic	-26151	NM_001351724	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
208179	chr7	64794051	64795080	+	0	NA	non-coding (NR_073391, exon 1 of 5)	non-coding (NR_073391, exon 1 of 5)	137	NM_001367575	7697		NM_006524	ENSG00000197008	ZNF138	pHZ-32	zinc finger protein 138	protein-coding
119474	chr19	40439771	40440130	+	0	NA	TTS (NM_013368)	TTS (NM_013368)	2648	NM_013368	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
146677	chr20	50516871	50517030	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	6567	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138177	chr2	202646121	202646380	+	0	NA	intron (NM_173511, intron 1 of 7)	AluSz|SINE|Alu	11281	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
34899	chr11	388521	388900	+	0	NA	Intergenic	MER52-int|LTR|ERV1	-3886	NM_001303029	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
9993	chr1	55129971	55130330	+	0	NA	intron (NM_015306, intron 31 of 67)	MIRb|SINE|MIR	85214	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
90990	chr17	2722171	2722330	+	0	NA	3' UTR (NM_001355573, exon 4 of 4)	3' UTR (NM_001355573, exon 4 of 4)	9941	NR_136412	105371592		NR_136412		LOC105371592	-	uncharacterized LOC105371592	ncRNA
850	chr1	1606201	1606700	+	0	NA	intron (NR_147951, intron 2 of 2)	intron (NR_147951, intron 2 of 2)	-6315	NM_001242659	643988		NM_001242659	ENSG00000228594	FNDC10	C1orf233	fibronectin type III domain containing 10	protein-coding
155373	chr22	38296521	38297030	+	0	NA	intron (NM_152221, intron 7 of 10)	intron (NM_152221, intron 7 of 10)	20658	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
38341	chr11	44563421	44563830	+	0	NA	Intergenic	Intergenic	-2038	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
210455	chr7	100122821	100123550	+	0	NA	intron (NM_152755, intron 4 of 5)	AluSx|SINE|Alu	-3327	NM_001190415	6878		NM_005641	ENSG00000106290	TAF6	ALYUS|MGC:8964|TAF(II)70|TAF(II)80|TAF2E|TAFII-70|TAFII-80|TAFII70|TAFII80|TAFII85	TATA-box binding protein associated factor 6	protein-coding
64347	chr14	24056271	24056950	+	0	NA	intron (NM_138360, intron 11 of 39).2	intron (NM_138360, intron 11 of 39).2	4601	NM_138360	90668		NM_138360	ENSG00000186648	CARMIL3	C14orf121|LRRC16B|crml-1	capping protein regulator and myosin 1 linker 3	protein-coding
193192	chr6	29737871	29738750	+	0	NA	non-coding (NR_026972, exon 4 of 6).3	non-coding (NR_026972, exon 4 of 6).3	10739	NR_026972	285830		NM_001003807	ENSG00000214922	HLA-F-AS1	-	HLA-F antisense RNA 1	ncRNA
222433	chr8	134828771	134829330	+	0	NA	Intergenic	UCON55|DNA|TcMar-Tigger	-9019	NR_126028	552853		NR_126028	ENSG00000253433	NCRNA00250	C8orf24	non-protein coding RNA 250	ncRNA
98242	chr17	46165371	46166880	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSx1|SINE|Alu	26657	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
49175	chr12	15202121	15202580	+	0	NA	intron (NM_032918, intron 2 of 4)	L1MA10|LINE|L1	19067	NM_001190726	85004		NM_032918	ENSG00000134533	RERG	-	RAS like estrogen regulated growth inhibitor	protein-coding
219426	chr8	71838451	71838830	+	0	NA	Intergenic	Intergenic	-4483	NR_033652	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
191172	chr6	4940571	4940730	+	0	NA	intron (NM_001368125, intron 6 of 8)	intron (NM_001368125, intron 6 of 8)	50610	NM_001143971	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
65176	chr14	49601901	49602500	+	0	NA	intron (NR_037793, intron 2 of 4)	Alu|SINE|Alu	3260	NM_152329	122769		NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
69087	chr14	92105801	92107180	+	0	NA	promoter-TSS (NM_030660)	promoter-TSS (NM_030660)	92	NM_001127696	4287		NM_004993	ENSG00000066427	ATXN3	AT3|ATX3|JOS|MJD|MJD1|SCA3	ataxin 3	protein-coding
145225	chr20	38917071	38917430	+	0	NA	intron (NM_001172735, intron 9 of 9)	AluSz|SINE|Alu	-9167	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
64149	chr14	22888001	22888330	+	0	NA	TTS (NM_173527)	TTS (NM_173527)	4943	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
79283	chr16	535401	536100	+	0	NA	TTS (NR_049852)	TTS (NR_049852)	434	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	ncRNA
165104	chr3	71543521	71543780	+	0	NA	promoter-TSS (NM_001244816)	promoter-TSS (NM_001244816)	-93	NM_001244816	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
5621	chr1	26160601	26160800	+	0	NA	intron (NM_024869, intron 1 of 1)	intron (NM_024869, intron 1 of 1)	1621	NM_024869	79927		NM_024869	ENSG00000197245	FAM110D	GRRP1	family with sequence similarity 110 member D	protein-coding
154854	chr22	37120621	37121150	+	0	NA	Intergenic	Intergenic	-11172	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
108968	chr18	79575071	79575500	+	0	NA	Intergenic	Intergenic	-3997	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
26350	chr10	15361051	15361350	+	0	NA	intron (NM_001010924, intron 1 of 7)	intron (NM_001010924, intron 1 of 7)	10089	NM_001010924	221061		NM_001010924	ENSG00000148468	FAM171A1	APCN|C10orf38	family with sequence similarity 171 member A1	protein-coding
10886	chr1	78619171	78621200	+	0	NA	promoter-TSS (NM_006820)	promoter-TSS (NM_006820)	-263	NM_001375648	10964		NM_006820	ENSG00000137959	IFI44L	C1orf29|GS3686|TLDC5B	interferon induced protein 44 like	protein-coding
81622	chr16	10853151	10853250	+	0	NA	Intergenic	Intergenic	-23998	NM_000246	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
75187	chr15	64773771	64773930	+	0	NA	intron (NM_194272, intron 1 of 7)	intron (NM_194272, intron 1 of 7)	893	NR_138363	348093		NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
79076	chr16	169371	169630	+	0	NA	Intergenic	Intergenic	-3376	NM_000517	3040		NM_000517	ENSG00000188536	HBA2	ECYT7|HBA-T2|HBH	hemoglobin subunit alpha 2	protein-coding
89509	chr16	89161771	89162330	+	0	NA	intron (NR_024347, intron 3 of 3)	intron (NR_024347, intron 3 of 3)	2830	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
113308	chr19	8570951	8571930	+	0	NA	intron (NM_012335, intron 1 of 27)	AluSc8|SINE|Alu	6002	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
215678	chr8	735571	736200	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-1743	NR_073397	9228		NM_004745	ENSG00000198010	DLGAP2	C8orf68|DAP2|ERICH1-AS1|SAPAP2	DLG associated protein 2	protein-coding
152132	chr22	19968471	19968630	+	0	NA	exon (NM_001135161, exon 6 of 6)	exon (NM_001135161, exon 6 of 6)	4797	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
55717	chr12	108268501	108268700	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	52062	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
129835	chr2	72825171	72826530	+	0	NA	exon (NM_015189, exon 1 of 22)	exon (NM_015189, exon 1 of 22)	183	NM_001321730	23233		NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2|SEMDJL3	exocyst complex component 6B	protein-coding
199366	chr6	116248271	116249930	+	0	NA	TTS (NM_021648)	TTS (NM_021648)	4975	NM_021648	23270		NM_021648	ENSG00000187189	TSPYL4	dJ486I3.2	TSPY like 4	protein-coding
68398	chr14	80955721	80956350	+	0	NA	intron (NM_001142626, intron 1 of 8)	intron (NM_001142626, intron 1 of 8)	414	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
156645	chr22	41629521	41629800	+	0	NA	intron (NM_001288977, intron 3 of 12)	AluY|SINE|Alu	8365	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
174410	chr4	39367251	39367430	+	0	NA	promoter-TSS (NM_001363495)	promoter-TSS (NM_001363495)	-978	NM_001204747	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
125752	chr2	20834621	20834830	+	0	NA	Intergenic	(CTCC)n|Simple_repeat|Simple_repeat	-11595	NM_001282723	60526		NM_021925	ENSG00000118961	LDAH	C2orf43|hLDAH	lipid droplet associated hydrolase	protein-coding
76058	chr15	72319651	72321000	+	0	NA	promoter-TSS (NM_001172684)	promoter-TSS (NM_001172684)	-168	NM_052840	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
159158	chr3	12795601	12795800	+	0	NA	promoter-TSS (NM_001162499)	promoter-TSS (NM_001162499)	-980	NM_001162499	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
47383	chr12	2720001	2720200	+	0	NA	Intergenic	Intergenic	-28943	NR_045725	100652846		NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	ncRNA
204341	chr7	2849801	2850980	+	0	NA	Intergenic	(CATCAC)n|Simple_repeat|Simple_repeat	-6082	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
114279	chr19	11593801	11594000	+	0	NA	Intergenic	AluSx|SINE|Alu	-3583	NM_001290084	199692		NM_145295	ENSG00000198551	ZNF627	-	zinc finger protein 627	protein-coding
190927	chr6	2869071	2870080	+	0	NA	intron (NR_033851, intron 1 of 1)	LTR12C|LTR|ERV1	6935	NR_033851	221756		NM_182544		SERPINB9P1	SERPINB9P	serpin family B member 9 pseudogene 1	pseudo
187964	chr5	149371201	149371690	+	0	NA	Intergenic	Intergenic	7847	NM_014443	27190		NM_014443	ENSG00000127743	IL17B	IL-17B|IL-20|NIRF|ZCYTO7	interleukin 17B	protein-coding
155046	chr22	37492721	37493580	+	0	NA	intron (NM_014550, intron 16 of 19)	L2b|LINE|L2	-6763	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
44269	chr11	102268531	102269300	+	0	NA	Intergenic	CpG	-48569	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
185177	chr5	119358871	119359280	+	0	NA	intron (NM_014350, intron 1 of 1)	L2b|LINE|L2	3056	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
163453	chr3	50605851	50606050	+	0	NA	TTS (NM_013324)	TTS (NM_013324)	5824	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
130841	chr2	87154971	87155150	+	0	NA	Intergenic	L1MB7|LINE|L1	-39726	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
233322	chr9	137429571	137429930	+	0	NA	intron (NM_006647, intron 5 of 13)	intron (NM_006647, intron 5 of 13)	6355	NM_001256068	10811		NM_006647	ENSG00000188747	NOXA1	NY-CO-31|SDCCAG31|p51NOX	NADPH oxidase activator 1	protein-coding
228522	chr9	100428471	100428630	+	0	NA	promoter-TSS (NM_001198806)	promoter-TSS (NM_001198806)	-964	NM_001198806	91283		NM_080655	ENSG00000066697	MSANTD3	C9orf30|L8	Myb/SANT DNA binding domain containing 3	protein-coding
202521	chr6	158571071	158571230	+	0	NA	intron (NR_164859, intron 1 of 16)	AluY|SINE|Alu	11059	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
112020	chr19	5043321	5043630	+	0	NA	intron (NM_001370093, intron 5 of 11)	intron (NM_001370093, intron 5 of 11)	74362	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
40471	chr11	64232351	64233000	+	0	NA	intron (NM_005528, intron 4 of 6)	intron (NM_005528, intron 4 of 6)	-1909	NM_001243733	7423		NM_003377	ENSG00000173511	VEGFB	VEGFL|VRF	vascular endothelial growth factor B	protein-coding
46025	chr11	122655421	122657380	+	0	NA	intron (NM_032873, intron 1 of 13)	CpG	678	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
81275	chr16	4646951	4647850	+	0	NA	intron (NM_001142291, intron 1 of 15)	intron (NM_001142291, intron 1 of 15)	22574	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
25746	chr10	9189401	9189600	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-86113	NR_108039	100507163		NR_108039		LINC00709	-	long intergenic non-protein coding RNA 709	ncRNA
34525	chr10	132784521	132784780	+	0	NA	3' UTR (NM_177400, exon 3 of 3)	3' UTR (NM_177400, exon 3 of 3)	1497	NM_177400	84504		NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B|SPAX8	NK6 homeobox 2	protein-coding
24779	chr1	248867551	248867650	+	0	NA	Intergenic	L1MA7|LINE|L1	-8515	NM_001350072	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
7920	chr1	37486901	37488400	+	0	NA	Intergenic	Intergenic	7420	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
157278	chr22	44091301	44091580	+	0	NA	intron (NM_001243385, intron 1 of 12)	L1MB3|LINE|L1	22323	NM_001243385	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
124486	chr19	58562171	58563680	+	0	NA	exon (NM_003422, exon 6 of 6)	exon (NM_003422, exon 6 of 6)	3739	NR_027334	100131691		NR_027334	ENSG00000267858	MZF1-AS1	-	MZF1 antisense RNA 1	ncRNA
123773	chr19	55107201	55107400	+	0	NA	intron (NM_017607, intron 3 of 21)	AluSq|SINE|Alu	10337	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
95308	chr17	35576851	35577150	+	0	NA	intron (NM_000286, intron 2 of 2)	intron (NM_000286, intron 2 of 2)	1571	NM_000286	5193		NM_000286	ENSG00000108733	PEX12	PAF-3|PBD3A	peroxisomal biogenesis factor 12	protein-coding
1236	chr1	2282951	2283050	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	54681	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
193076	chr6	28742921	28743050	+	0	NA	Intergenic	tRNA-Arg-CGG|tRNA|tRNA	-88510	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
165565	chr3	101519951	101520250	+	0	NA	intron (NR_036433, intron 1 of 1)	AluJr|SINE|Alu	1233	NR_036433	131909		NR_036433		ARB2BP	FAM172B|FAM172BP	ARB2 family member B, pseudogene	pseudo
9262	chr1	46285451	46285550	+	0	NA	exon (NM_006369, exon 4 of 10)	exon (NM_006369, exon 4 of 10)	18116	NM_006369	10489		NM_006369	ENSG00000132128	LRRC41	MUF1|PP7759	leucine rich repeat containing 41	protein-coding
208146	chr7	64463721	64464080	+	0	NA	Intergenic	Intergenic	30207	NR_029404	649395		NR_029404		YWHAEP1	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1	pseudo
108640	chr18	76493971	76494580	+	0	NA	TTS (NR_136504)	TTS (NR_136504)	967	NM_014643	9658		NM_014643	ENSG00000101493	ZNF516	HsT287	zinc finger protein 516	protein-coding
126784	chr2	30263371	30263530	+	0	NA	Intergenic	MIR|SINE|MIR	31916	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
195785	chr6	40640621	40640950	+	0	NA	Intergenic	Intergenic	-53421	NM_020737	57497		NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
129769	chr2	71067671	71069180	+	0	NA	promoter-TSS (NM_001365466)	promoter-TSS (NM_001365466)	129	NM_001330426	55577		NM_017567	ENSG00000124357	NAGK	GNK|HSA242910	N-acetylglucosamine kinase	protein-coding
14660	chr1	145720651	145721580	+	0	NA	intron (NR_103845, intron 1 of 3)	CpG	1616	NM_007053	11126		NM_007053	ENSG00000117281	CD160	BY55|NK1|NK28	CD160 molecule	protein-coding
21033	chr1	203022671	203023400	+	0	NA	non-coding (NR_136531, exon 8 of 8)	non-coding (NR_136531, exon 8 of 8)	-3456	NM_001304331	8497		NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding
80125	chr16	2045121	2045380	+	0	NA	intron (NM_001318194, intron 2 of 5)	AluSq|SINE|Alu	2584	NM_001318194	4913		NM_002528	ENSG00000065057	NTHL1	FAP3|NTH1|OCTS3|hNTH1	nth like DNA glycosylase 1	protein-coding
13810	chr1	117610971	117611800	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	5337	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
188470	chr5	154753651	154753750	+	0	NA	intron (NM_015315, intron 1 of 18)	MIRc|SINE|MIR	-1677	NM_001367718	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
4730	chr1	23347251	23347350	+	0	NA	Intergenic	AluJb|SINE|Alu	-3016	NM_001102397	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
95742	chr17	38592801	38593030	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	13037	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
19298	chr1	172894701	172895580	+	0	NA	Intergenic	Tigger10|DNA|TcMar-Tigger	155801	NM_005092	8995		NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	TNF superfamily member 18	protein-coding
87888	chr16	78742151	78743430	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	643136	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
73602	chr15	44550071	44550630	+	0	NA	intron (NM_001284336, intron 2 of 5)	AluJr|SINE|Alu	13203	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
225304	chr9	34577551	34578530	+	0	NA	intron (NM_001842, intron 1 of 8)	CpG	10028	NR_024369	415056		NR_024369	ENSG00000237159	CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
904	chr1	1682621	1682880	+	0	NA	intron (NM_001110781, intron 1 of 8)	intron (NM_001110781, intron 1 of 8)	10045	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
192888	chr6	27495171	27496030	+	0	NA	Intergenic	CpG	-22482	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
123674	chr19	54959001	54959400	+	0	NA	Intergenic	AluSg|SINE|Alu	-6084	NM_001174081	55655		NM_017852	ENSG00000022556	NLRP2	CLR19.9|NALP2|NBS1|OZEMA18|PAN1|PYPAF2	NLR family pyrin domain containing 2	protein-coding
215351	chr7	157379271	157379430	+	0	NA	intron (NM_001363676, intron 5 of 6)	intron (NM_001363676, intron 5 of 6)	42346	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
225031	chr9	33149221	33149480	+	0	NA	intron (NM_001378495, intron 1 of 5)	AluSx3|SINE|Alu	-17598	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
108996	chr18	79695951	79696050	+	0	NA	exon (NM_001202504, exon 3 of 13)	exon (NM_001202504, exon 3 of 13)	14570	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
200376	chr6	134240521	134241250	+	0	NA	intron (NM_001143676, intron 2 of 13)	intron (NM_001143676, intron 2 of 13)	-63024	NM_001143677	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
179809	chr5	425771	425930	+	0	NA	intron (NR_165163, intron 9 of 12)	intron (NR_165163, intron 9 of 12)	17310	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
22005	chr1	209786021	209786300	+	0	NA	3' UTR (NM_006147, exon 9 of 9)	3' UTR (NM_006147, exon 9 of 9)	-1601	NM_152485	148304		NM_152485	ENSG00000162757	C1orf74	URLC4	chromosome 1 open reading frame 74	protein-coding
97650	chr17	44202251	44202350	+	0	NA	Intergenic	AluSx|SINE|Alu	-2416	NM_001382308	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
14695	chr1	145910021	145910800	+	0	NA	promoter-TSS (NM_003637)	promoter-TSS (NM_003637)	-221	NM_001303041	8515		NM_003637	ENSG00000143127	ITGA10	PRO827	integrin subunit alpha 10	protein-coding
87181	chr16	69378471	69379030	+	0	NA	intron (NM_005652, intron 3 of 9)	L1ME1|LINE|L1	7257	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
68156	chr14	75577351	75579350	+	0	NA	promoter-TSS (NM_017791)	promoter-TSS (NM_017791)	-270	NM_017791	55640		NM_017791	ENSG00000119686	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2	FLVCR choline and putative heme transporter 2	protein-coding
199398	chr6	116444171	116444700	+	0	NA	non-coding (NR_136524, exon 5 of 5)	non-coding (NR_136524, exon 5 of 5)	-16940	NM_001276460	441168		NM_001010919	ENSG00000188820	CALHM6	C6orf187|FAM26F|INAM|dJ93H18.5	calcium homeostasis modulator family member 6	protein-coding
146858	chr20	51442751	51443050	+	0	NA	intron (NM_173091, intron 6 of 9)	intron (NM_173091, intron 6 of 9)	10077	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
103518	chr17	78472701	78473150	+	0	NA	intron (NM_173628, intron 54 of 80)	intron (NM_173628, intron 54 of 80)	-11985	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
126683	chr2	30090721	30091180	+	0	NA	Intergenic	Intergenic	-56057	NM_001127401	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
134876	chr2	148813671	148814430	+	0	NA	Intergenic	MER74A|LTR|ERVL	-61177	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
191404	chr6	8432671	8433030	+	0	NA	intron (NM_001370479, intron 1 of 9)	L2a|LINE|L2	2695	NM_001370478	51000		NM_015948	ENSG00000124786	SLC35B3	C6orf196|CGI-19|PAPST2	solute carrier family 35 member B3	protein-coding
106762	chr18	23586051	23587650	+	0	NA	promoter-TSS (NM_000271)	promoter-TSS (NM_000271)	-344	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
236578	chrX	72776651	72777850	+	0	NA	non-coding (NR_026594, exon 1 of 1)	non-coding (NR_026594, exon 1 of 1)	177	NR_026594	653687		NR_026594		FAM226B	CXorf50B|LINC00246B|NCRNA00246B	family with sequence similarity 226 member B	ncRNA
113971	chr19	10810551	10810650	+	0	NA	intron (NM_001005361, intron 14 of 20)	intron (NM_001005361, intron 14 of 20)	6896	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
55925	chr12	109878601	109878800	+	0	NA	intron (NM_016433, intron 1 of 4)	intron (NM_016433, intron 1 of 4)	1841	NM_016433	51228		NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
133923	chr2	130371931	130373380	+	0	NA	intron (NM_014369, intron 13 of 14)	CpG-16578	16599	NM_014369	26469		NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase non-receptor type 18	protein-coding
165472	chr3	98837701	98838050	+	0	NA	intron (NM_080927, intron 3 of 15)	SVA_F|Retroposon|SVA	63820	NM_080927	131566		NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	discoidin, CUB and LCCL domain containing 2	protein-coding
94320	chr17	28760651	28760950	+	0	NA	intron (NM_018182, intron 3 of 3)	intron (NM_018182, intron 3 of 3)	16789	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
53444	chr12	65184201	65184430	+	0	NA	intron (NM_001167614, intron 1 of 12)	Tigger16b|DNA|TcMar-Tigger	14732	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
231740	chr9	132078251	132078750	+	0	NA	intron (NM_001253881, intron 1 of 6)	intron (NM_001253881, intron 1 of 6)	1367	NM_001253882	9442		NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|NEDSCAC|TRAP37	mediator complex subunit 27	protein-coding
160538	chr3	30666271	30666900	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	59984	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
125796	chr2	23941771	23941930	+	0	NA	intron (NM_181713, intron 1 of 6)	AluSx1|SINE|Alu	1387	NM_181713	165324		NM_181713	ENSG00000173960	UBXN2A	UBXD4	UBX domain protein 2A	protein-coding
176091	chr4	82899771	82901400	+	0	NA	promoter-TSS (NM_001317776)	promoter-TSS (NM_001317776)	-14	NM_001318120	22872		NM_014933	ENSG00000138674	SEC31A	ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1	SEC31 homolog A, COPII coat complex component	protein-coding
36779	chr11	9444571	9444730	+	0	NA	intron (NM_006391, intron 24 of 24)	AluSz|SINE|Alu	15884	NR_002962	677808		NR_002962	ENSG00000201998	SNORA23	ACA23	small nucleolar RNA, H/ACA box 23	snoRNA
26525	chr10	21495521	21496200	+	0	NA	TTS (NR_031736)	TTS (NR_031736)	781	NR_031736	100302129		NR_031736	ENSG00000222071	MIR1915	MIRN1915|hsa-mir-1915	microRNA 1915	ncRNA
116223	chr19	17520651	17520950	+	0	NA	intron (NM_012088, intron 4 of 4)	intron (NM_012088, intron 4 of 4)	-2501	NM_001098524	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
107148	chr18	35174171	35174530	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-66684	NM_032347	84307		NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
146862	chr20	51463071	51463230	+	0	NA	intron (NM_173091, intron 5 of 9)	intron (NM_173091, intron 5 of 9)	-10173	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
136271	chr2	174684671	174684830	+	0	NA	Intergenic	Intergenic	-1837	NM_001375835	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
217477	chr8	28883051	28883350	+	0	NA	intron (NM_001363038, intron 1 of 16)	intron (NM_001363038, intron 1 of 16)	6715	NM_001172562	55756		NM_018250	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
116347	chr19	17862971	17863530	+	0	NA	TTS (NR_000012)	TTS (NR_000012)	662	NR_000012	26780		NR_000012	ENSG00000207166	SNORA68	RNU68|SNORA68A|U68	small nucleolar RNA, H/ACA box 68	snoRNA
106758	chr18	23582151	23582950	+	0	NA	intron (NM_000271, intron 1 of 24)	AluJb|SINE|Alu	3956	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
203211	chr6	167833121	167833380	+	0	NA	intron (NM_001291964, intron 1 of 32)	intron (NM_001291964, intron 1 of 32)	5615	NM_001291964	4301		NM_005936	ENSG00000130396	AFDN	AF6|MLL-AF6|MLLT4|l-afadin	afadin, adherens junction formation factor	protein-coding
91815	chr17	7081601	7082030	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-1564	NM_001330070	10462		NM_006344	ENSG00000132514	CLEC10A	CD301|CLECSF13|CLECSF14|HML|HML2|MGL	C-type lectin domain containing 10A	protein-coding
213764	chr7	140641851	140642150	+	0	NA	promoter-TSS (NM_001318053)	promoter-TSS (NM_001318053)	-540	NM_001318053	27147		NM_015689	ENSG00000146966	DENND2A	FAM31D|KIAA1277	DENN domain containing 2A	protein-coding
73955	chr15	51739571	51740150	+	0	NA	intron (NM_001143917, intron 1 of 2)	AluJo|SINE|Alu	-2205	NM_153374	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
38193	chr11	36379121	36379380	+	0	NA	intron (NM_024841, intron 2 of 9)	intron (NM_024841, intron 2 of 9)	3265	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
50212	chr12	46212421	46213630	+	0	NA	intron (NM_001278387, intron 6 of 17)	L3|LINE|CR1	53491	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
219679	chr8	80528501	80528900	+	0	NA	Intergenic	Intergenic	42474	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
227005	chr9	83697251	83698030	+	0	NA	intron (NM_053067, intron 1 of 9)	AluSx4|SINE|Alu	-10195	NR_135839	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
195093	chr6	35593601	35593800	+	0	NA	intron (NM_001145775, intron 7 of 11)	AluSz|SINE|Alu	71089	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
194495	chr6	33264101	33264300	+	0	NA	intron (NM_001289175, intron 14 of 19).6	intron (NM_001289175, intron 14 of 19).6	7676	NM_022553	6293		NM_022553	ENSG00000223501	VPS52	ARE1|SAC2|SACM2L|dJ1033B10.5	VPS52 subunit of GARP complex	protein-coding
180374	chr5	7816221	7816550	+	0	NA	intron (NM_020546, intron 22 of 24)	LTR33|LTR|ERVL	34748	NM_001089584	134121		NM_001089584	ENSG00000215217	CFAP90	C5orf49	cilia and flagella associated protein 90	protein-coding
59551	chr13	27284201	27284430	+	0	NA	Intergenic	Intergenic	13138	NM_001331126	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
124367	chr19	58358971	58359130	+	0	NA	intron (NM_198458, intron 1 of 2)	intron (NM_198458, intron 1 of 2)	-3576	NR_136527	105372483		NR_136527		ZNF497-AS1	-	ZNF497 antisense RNA 1	ncRNA
188144	chr5	150405171	150406080	+	0	NA	intron (NM_001364083, intron 3 of 6)	L2b|LINE|L2	7131	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
137850	chr2	200810101	200810330	+	0	NA	intron (NR_110275, intron 1 of 3)	intron (NR_110275, intron 1 of 3)	-1331	NM_014670	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
164809	chr3	70950471	70950630	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	114374	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
232048	chr9	133457371	133458000	+	0	NA	intron (NR_024514, intron 17 of 17)	MIRb|SINE|MIR	-2280	NM_001242370	11094		NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
223446	chr8	143975901	143977500	+	0	NA	promoter-TSS (NM_000445)	promoter-TSS (NM_000445)	45	NM_000445	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
86345	chr16	66504751	66504850	+	0	NA	Intergenic	AluJb|SINE|Alu	-28398	NR_109960	101927726		NR_109960	ENSG00000261656	BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
155159	chr22	37679621	37680280	+	0	NA	TTS (NM_002305)	TTS (NM_002305)	4314	NM_002305	3956		NM_002305	ENSG00000100097	LGALS1	GAL1|GBP	galectin 1	protein-coding
236455	chrX	71563901	71564230	+	0	NA	intron (NM_181672, intron 18 of 21)	L2c|LINE|L2	-13959	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
63543	chr14	19947671	19947830	+	0	NA	Intergenic	Intergenic	12142	NM_001004063	79544		NM_001004063	ENSG00000155249	OR4K1	OR14-19	olfactory receptor family 4 subfamily K member 1	protein-coding
122739	chr19	50092601	50092830	+	0	NA	promoter-TSS (NR_024214).2	promoter-TSS (NR_024214).2	-106	NR_024229	100170216		NR_024229		SNAR-A10	-	small NF90 (ILF3) associated RNA A10	snRNA
54835	chr12	94987251	94988250	+	0	NA	intron (NM_001258338, intron 2 of 2)	AluJb|SINE|Alu	15947	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
73437	chr15	43184651	43186280	+	0	NA	promoter-TSS (NR_027513)	promoter-TSS (NR_027513)	62	NR_027513	23582		NM_012142	ENSG00000166946	CCNDBP1	DIP1|GCIP|HHM	cyclin D1 binding protein 1	protein-coding
29877	chr10	72695201	72695430	+	0	NA	intron (NM_001270680, intron 1 of 7)	intron (NM_001270680, intron 1 of 7)	2696	NM_001270680	90550		NM_138357	ENSG00000156026	MCU	C10orf42|CCDC109A|HsMCU	mitochondrial calcium uniporter	protein-coding
37571	chr11	19071201	19072000	+	0	NA	Intergenic	Intergenic	-10883	NM_054030	117194		NM_054030	ENSG00000183695	MRGPRX2	MGRG3|MRGX2	MAS related GPR family member X2	protein-coding
208353	chr7	66556301	66556500	+	0	NA	intron (NR_111979, intron 3 of 3)	CpG	36007	NR_111978	493754		NR_002933	ENSG00000291136	RABGEF1P1	GS1-124K5.11	RABGEF1 pseudogene 1	pseudo
170709	chr3	187974671	187975900	+	0	NA	intron (NR_135537, intron 1 of 1)	L2c|LINE|L2	1122	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
43928	chr11	90290451	90290550	+	0	NA	intron (NR_104190, intron 1 of 6)	AluYa5|SINE|Alu	39268	NR_104190	101929222		NR_104190	ENSG00000261645	DISC1FP1	Boymaw	DISC1 fusion partner 1	ncRNA
131354	chr2	96171521	96171780	+	0	NA	Intergenic	Intergenic	-26210	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
1803	chr1	6200651	6200750	+	0	NA	Intergenic	LTR50|LTR|ERVL	-1105	NM_000983	6146		NM_000983	ENSG00000116251	RPL22	EAP|HBP15|HBP15/L22|L22|eL22	ribosomal protein L22	protein-coding
69624	chr14	97697601	97698200	+	0	NA	Intergenic	Intergenic	-11242	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
58205	chr12	126770021	126770480	+	0	NA	intron (NR_033878, intron 1 of 4)	THE1B|LTR|ERVL-MaLR	2012	NR_033878	387895		NR_033878		LINC00944	DMDRMR	long intergenic non-protein coding RNA 944	ncRNA
207998	chr7	55516551	55516650	+	0	NA	intron (NM_001321242, intron 2 of 4)	intron (NM_001321242, intron 2 of 4)	10280	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
160307	chr3	27476851	27477750	+	0	NA	intron (NR_135544, intron 1 of 24)	intron (NR_135544, intron 1 of 24)	7084	NR_135543	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
20789	chr1	201110951	201111250	+	0	NA	intron (NM_000069, intron 1 of 43)	intron (NM_000069, intron 1 of 43)	1326	NM_000069	779		NM_000069	ENSG00000081248	CACNA1S	CACNL1A3|CCHL1A3|CMYP18|Cav1.1|DHPRM|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP	calcium voltage-gated channel subunit alpha1 S	protein-coding
40606	chr11	64643501	64644250	+	0	NA	promoter-TSS (NM_138734)	promoter-TSS (NM_138734)	-330	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
213663	chr7	139855571	139855730	+	0	NA	intron (NM_030984, intron 1 of 11)	intron (NM_030984, intron 1 of 11)	26386	NM_001366538	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
120869	chr19	45537171	45537330	+	0	NA	intron (NM_001017989, intron 1 of 1)	AluSx3|SINE|Alu	29771	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
103381	chr17	78141721	78142530	+	0	NA	3' UTR (NM_152468, exon 16 of 16)	3' UTR (NM_152468, exon 16 of 16)	-4260	NM_001163075	100141515		NM_001163075	ENSG00000187997	C17orf99	IL-40|UNQ464	chromosome 17 open reading frame 99	protein-coding
44481	chr11	105043501	105044300	+	0	NA	intron (NM_052889, intron 2 of 3)	intron (NM_052889, intron 2 of 3)	1424	NM_052889	114769		NM_052889	ENSG00000204397	CARD16	COP|COP1|LLID-114769|PSEUDO-ICE	caspase recruitment domain family member 16	protein-coding
132582	chr2	106542801	106543230	+	0	NA	intron (NM_001368307, intron 5 of 5)	intron (NM_001368307, intron 5 of 5)	55651	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
82377	chr16	16033021	16034130	+	0	NA	intron (NM_004996, intron 6 of 30)	intron (NM_004996, intron 6 of 30)	83959	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
102228	chr17	75238051	75238150	+	0	NA	3' UTR (NM_014001, exon 16 of 16)	3' UTR (NM_014001, exon 16 of 16)	23506	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
99831	chr17	55236871	55237630	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-27710	NM_002126	3131		NM_002126	ENSG00000108924	HLF	-	HLF transcription factor, PAR bZIP family member	protein-coding
68419	chr14	81192601	81193200	+	0	NA	intron (NM_015859, intron 6 of 8)	intron (NM_015859, intron 6 of 8)	9934	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
57297	chr12	121652801	121653400	+	0	NA	exon (NM_001363685, exon 5 of 7)	exon (NM_001363685, exon 5 of 7)	16554	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
177932	chr4	133739351	133739450	+	0	NA	Intergenic	L1PA2|LINE|L1	462389	NM_001363585	132430		NM_001114734	ENSG00000254535	PABPC4L	-	poly(A) binding protein cytoplasmic 4 like	protein-coding
151376	chr21	45890121	45890380	+	0	NA	intron (NM_001382276, intron 6 of 18)	intron (NM_001382276, intron 6 of 18)	42100	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
112753	chr19	7392951	7393130	+	0	NA	intron (NM_001367823, intron 10 of 28)	AluJo|SINE|Alu	-2105	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
34350	chr10	132200851	132201350	+	0	NA	intron (NM_006426, intron 10 of 13)	intron (NM_006426, intron 10 of 13)	14152	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
120735	chr19	45371951	45372550	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1663	NM_001130867	2068		NM_000400	ENSG00000104884	ERCC2	COFS2|EM9|TFIIH|TTD|TTD1|XPD	ERCC excision repair 2, TFIIH core complex helicase subunit	protein-coding
231702	chr9	131724701	131725830	+	0	NA	intron (NM_001377935, intron 1 of 26)	7SLRNA|srpRNA|srpRNA	12182	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
79986	chr16	1816001	1816200	+	0	NA	intron (NM_001040427, intron 8 of 9)	AluSc|SINE|Alu	10725	NM_005326	3029		NM_005326	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
113537	chr19	10145971	10146330	+	0	NA	intron (NM_001318730, intron 27 of 39)	intron (NM_001318730, intron 27 of 39)	-26251	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
6371	chr1	27868521	27870400	+	0	NA	Intergenic	Intergenic	-3083	NM_004848	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
50724	chr12	48971201	48972100	+	0	NA	promoter-TSS (NM_003394)	promoter-TSS (NM_003394)	85	NM_003394	7480		NM_003394	ENSG00000169884	WNT10B	SHFM6|STHAG8|WNT-12	Wnt family member 10B	protein-coding
197717	chr6	86570051	86570150	+	0	NA	Intergenic	L1PA3|LINE|L1	-367428	NM_000865	3354		NM_000865	ENSG00000168830	HTR1E	5-HT1E	5-hydroxytryptamine receptor 1E	protein-coding
220107	chr8	94500101	94500500	+	0	NA	intron (NM_015496, intron 16 of 23)	AluSc8|SINE|Alu	-25185	NM_012415	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
172705	chr4	2789601	2790500	+	0	NA	Intergenic	Intergenic	-3035	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
169410	chr3	160949471	160949850	+	0	NA	intron (NM_001317912, intron 2 of 4)	L2c|LINE|L2	79062	NR_134243	151742		NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
98264	chr17	46187951	46188300	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	4657	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
99138	chr17	49317001	49317200	+	0	NA	exon (NM_001145365, exon 2 of 6)	exon (NM_001145365, exon 2 of 6)	-28646	NR_106745	102465137		NR_106745	ENSG00000273500	MIR6129	hsa-mir-6129	microRNA 6129	ncRNA
42505	chr11	70268701	70268900	+	0	NA	Intergenic	AluJr|SINE|Alu	-1890	NM_001378006	8500		NM_003626	ENSG00000131626	PPFIA1	LIP.1|LIP1|LIPRIN	PTPRF interacting protein alpha 1	protein-coding
207966	chr7	55240521	55240850	+	0	NA	intron (NR_110426, intron 2 of 3)	intron (NR_110426, intron 2 of 3)	14950	NR_110426	102725541		NR_110426		ELDR	Fabl|LINC01156	EGFR long non-coding downstream RNA	ncRNA
37620	chr11	20353651	20354300	+	0	NA	Intergenic	Intergenic	-9710	NM_006410	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
41533	chr11	66280271	66281050	+	0	NA	intron (NM_182553, intron 1 of 5)	intron (NM_182553, intron 1 of 5)	2485	NR_073079	254263		NM_182553	ENSG00000174871	CNIH2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding
210986	chr7	102028351	102028650	+	0	NA	intron (NM_181552, intron 3 of 23)	intron (NM_181552, intron 3 of 23)	210874	NM_181552	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
69977	chr14	99927771	99928160	+	0	NA	intron (NM_001375411, intron 17 of 21)	(GTG)n|Simple_repeat|Simple_repeat	-43457	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
159162	chr3	12799351	12800150	+	0	NA	intron (NM_012298, intron 1 of 12)	L2c|LINE|L2	3070	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
122865	chr19	50489551	50490050	+	0	NA	3' UTR (NM_175063, exon 8 of 8)	3' UTR (NM_175063, exon 8 of 8)	-12952	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
208059	chr7	56075851	56076350	+	0	NA	intron (NM_001366647, intron 4 of 8)	AluYf1|SINE|Alu	11814	NM_001366649	25870		NM_015411	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
192336	chr6	24101721	24101800	+	0	NA	Intergenic	Intergenic	-24455	NM_080723	140767		NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
134917	chr2	151137221	151137300	+	0	NA	Intergenic	L1M1|LINE|L1	124603	NM_198557	375287		NM_198557	ENSG00000184898	RBM43	C2orf38	RNA binding motif protein 43	protein-coding
204919	chr7	6164551	6164950	+	0	NA	3' UTR (NM_001367580, exon 13 of 13)	3' UTR (NM_001367580, exon 13 of 13)	7387	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
138057	chr2	201532801	201533000	+	0	NA	intron (NM_001168216, intron 11 of 12)	MLT1H2-int|LTR|ERVL-MaLR	81160	NM_001206864	55437		NM_018571	ENSG00000082146	STRADB	ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038	STE20 related adaptor beta	protein-coding
111728	chr19	4346821	4347080	+	0	NA	intron (NM_032868, intron 3 of 11)	AluSc|SINE|Alu	3388	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
90247	chr17	781471	782830	+	0	NA	promoter-TSS (NM_001317947)	promoter-TSS (NM_001317947)	130	NM_001366249	51031		NM_016080	ENSG00000167699	GLOD4	C17orf25|CGI-150|HC6|HC71	glyoxalase domain containing 4	protein-coding
153431	chr22	25064601	25065000	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	36826	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
43364	chr11	76807321	76807640	+	0	NA	Intergenic	Intergenic	15728	NM_001318477	25987		NM_015516	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
125768	chr2	23452721	23453380	+	0	NA	intron (NM_052920, intron 1 of 13)	L2c|LINE|L2	67871	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
221499	chr8	124556321	124556580	+	0	NA	intron (NM_001363300, intron 10 of 12)	intron (NM_001363300, intron 10 of 12)	17327	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
122601	chr19	49766021	49767530	+	0	NA	promoter-TSS (NM_130787)	promoter-TSS (NM_130787)	-226	NM_130787	160		NM_014203	ENSG00000196961	AP2A1	ADTAA|AP2-ALPHA|CLAPA1	adaptor related protein complex 2 subunit alpha 1	protein-coding
139741	chr2	229852301	229853330	+	0	NA	intron (NM_001348327, intron 4 of 41)	intron (NM_001348327, intron 4 of 41)	68864	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
108602	chr18	75229221	75230230	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	18928	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
11148	chr1	86799121	86799380	+	0	NA	Intergenic	Intergenic	94674	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
3265	chr1	15100221	15100880	+	0	NA	intron (NM_201628, intron 10 of 14)	intron (NM_201628, intron 10 of 14)	51914	NR_027136	200197		NM_182534	ENSG00000175147	TMEM51-AS1	C1orf126	TMEM51 antisense RNA 1	ncRNA
112654	chr19	6860701	6860900	+	0	NA	Intergenic	AluSc5|SINE|Alu	-26779	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
101253	chr17	66307201	66307400	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	4687	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
175808	chr4	77821701	77822750	+	0	NA	Intergenic	Intergenic	-1956	NM_001365006	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
17590	chr1	156860601	156861750	+	0	NA	intron (NM_002529, intron 1 of 16)	CpG	296	NM_002529	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
178883	chr4	155758721	155759250	+	0	NA	promoter-TSS (NM_001291954)	promoter-TSS (NM_001291954)	-36	NM_001291954	2983		NM_000857	ENSG00000061918	GUCY1B1	GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B3	guanylate cyclase 1 soluble subunit beta 1	protein-coding
238254	chrX	147917901	147918650	+	0	NA	intron (NR_033699, intron 1 of 15)	intron (NR_033699, intron 1 of 15)	6324	NM_001185075	2332		NM_002024	ENSG00000102081	FMR1	FMRP|FRAXA|POF|POF1	fragile X messenger ribonucleoprotein 1	protein-coding
197689	chr6	85634501	85634900	+	0	NA	intron (NM_001253771, intron 5 of 10)	intron (NM_001253771, intron 5 of 10)	6751	NM_001159675	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
167780	chr3	133423501	133424280	+	0	NA	intron (NM_003571, intron 1 of 6)	intron (NM_003571, intron 1 of 6)	23834	NM_003571	8419		NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding
5159	chr1	24920251	24920900	+	0	NA	intron (NM_001031680, intron 3 of 5)	L1ME4a|LINE|L1	-1159	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
15849	chr1	151402051	151402450	+	0	NA	TTS (NM_145796)	TTS (NM_145796)	2677	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
11841	chr1	92956821	92957580	+	0	NA	intron (NM_001006605, intron 1 of 4)	intron (NM_001006605, intron 1 of 4)	4262	NM_001006605	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
83392	chr16	27111451	27112380	+	0	NA	Intergenic	MIR|SINE|MIR	44988	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
199487	chr6	118648521	118648800	+	0	NA	intron (NM_001178035, intron 2 of 13)	AluY|SINE|Alu	2931	NM_206921	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
14876	chr1	146472101	146472900	+	0	NA	Intergenic	CpG	-13832	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
94555	chr17	29608951	29610000	+	0	NA	intron (NM_152345, intron 7 of 14)	intron (NM_152345, intron 7 of 14)	8642	NM_001351302	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
104012	chr17	80110271	80110430	+	0	NA	intron (NM_000152, intron 9 of 19)	intron (NM_000152, intron 9 of 19)	8769	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
195399	chr6	36772771	36772930	+	0	NA	intron (NM_001376889, intron 11 of 21)	AluJo|SINE|Alu	-7055	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
112904	chr19	7639151	7639250	+	0	NA	intron (NM_006949, intron 3 of 18)	intron (NM_006949, intron 3 of 18)	2090	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
108952	chr18	79511821	79512430	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-67157	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
122951	chr19	50722401	50722880	+	0	NA	promoter-TSS (NM_002975)	promoter-TSS (NM_002975)	-724	NM_002975	6320		NM_002975	ENSG00000105472	CLEC11A	CLECSF3|LSLCL|P47|SCGF	C-type lectin domain containing 11A	protein-coding
82668	chr16	19583651	19583950	+	0	NA	intron (NR_158160, intron 7 of 28)	L1MA5|LINE|L1	28097	NM_001300743	57020		NM_020314	ENSG00000103544	VPS35L	C16orf62|EC97|RTSC3	VPS35 endosomal protein sorting factor like	protein-coding
171813	chr4	662001	662430	+	0	NA	exon (NM_001379247, exon 11 of 20)	exon (NM_001379247, exon 11 of 20)	9038	NM_001350154	5158		NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|GMP-PDEbeta|PDEB|RP40|rd1	phosphodiesterase 6B	protein-coding
17565	chr1	156816021	156818000	+	0	NA	promoter-TSS (NM_003975)	promoter-TSS (NM_003975)	-162	NM_001161441	9047		NM_003975	ENSG00000027869	SH2D2A	F2771|SCAP|TSAD|VRAP	SH2 domain containing 2A	protein-coding
170631	chr3	187027111	187028200	+	0	NA	intron (NM_003032, intron 1 of 6)	intron (NM_003032, intron 1 of 6)	5800	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
143430	chr20	29879031	29879530	+	0	NA	Intergenic	Intergenic	-1104	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
197560	chr6	79631001	79631930	+	0	NA	exon (NM_031469, exon 1 of 4)	exon (NM_031469, exon 1 of 4)	136	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
21740	chr1	206808571	206809000	+	0	NA	intron (NM_153758, intron 2 of 6)	intron (NM_153758, intron 2 of 6)	-20092	NM_013371	29949		NM_013371	ENSG00000142224	IL19	IL-10C|MDA1|NG.1|ZMDA1	interleukin 19	protein-coding
190830	chr6	1554501	1555350	+	0	NA	Intergenic	Intergenic	-50606	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
174639	chr4	40349651	40349950	+	0	NA	intron (NM_017581, intron 4 of 4)	MER5A|DNA|hAT-Charlie	14467	NM_017581	55584		NM_017581	ENSG00000174343	CHRNA9	HSA243342|NACHRA9	cholinergic receptor nicotinic alpha 9 subunit	protein-coding
89334	chr16	88747871	88748580	+	0	NA	intron (NM_001142864, intron 2 of 50)	intron (NM_001142864, intron 2 of 50)	5458	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
162669	chr3	48923621	48924080	+	0	NA	intron (NM_001349212, intron 2 of 14)	intron (NM_001349212, intron 2 of 14)	-4465	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
16814	chr1	155590751	155591150	+	0	NA	Intergenic	Intergenic	-19220	NM_001350782	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
52046	chr12	54012871	54013600	+	0	NA	TTS (NM_022658)	TTS (NM_022658)	-3653	NM_153693	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
139412	chr2	222613721	222614000	+	0	NA	non-coding (NR_130154, exon 16 of 18)	non-coding (NR_130154, exon 16 of 18)	42232	NM_005687	10056		NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC|RILDBC1|RJBS	phenylalanyl-tRNA synthetase subunit beta	protein-coding
192491	chr6	24960171	24960330	+	0	NA	intron (NM_001286446, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	-24290	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
159078	chr3	11909221	11909580	+	0	NA	Intergenic	Intergenic	-62515	NM_001366031	132001		NM_138807	ENSG00000144559	TAMM41	C3orf31|COXPD56|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
62934	chr13	111201621	111201880	+	0	NA	intron (NM_001113513, intron 1 of 19)	intron (NM_001113513, intron 1 of 19)	-1310	NM_001320853	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
77531	chr15	84720951	84722330	+	0	NA	Intergenic	Intergenic	-5180	NM_001271920	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
56440	chr12	113464271	113464630	+	0	NA	intron (NM_022363, intron 4 of 4)	CpG	7421	NM_022363	64211		NM_022363	ENSG00000089116	LHX5	-	LIM homeobox 5	protein-coding
207612	chr7	44983671	44983830	+	0	NA	intron (NR_152594, intron 3 of 3)	intron (NR_152594, intron 3 of 3)	1760	NR_002952	677798		NR_002952	ENSG00000277184	SNORA9	ACA9|SNORA9A	small nucleolar RNA, H/ACA box 9	snoRNA
192760	chr6	26452651	26452950	+	0	NA	3' UTR (NM_001242803, exon 6 of 6)	3' UTR (NM_001242803, exon 6 of 6)	-5104	NM_001197233	11120		NM_007049	ENSG00000112763	BTN2A1	BK14H9.1|BT2.1|BTF1|BTN2.1|DJ3E1.1	butyrophilin subfamily 2 member A1	protein-coding
28943	chr10	63216821	63217700	+	0	NA	exon (NM_001318154, exon 5 of 26)	exon (NM_001318154, exon 5 of 26)	51963	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
219990	chr8	89904121	89904650	+	0	NA	intron (NM_001126111, intron 1 of 5)	intron (NM_001126111, intron 1 of 5)	1815	NM_001126111	734		NM_004337	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
70346	chr14	101857051	101857980	+	0	NA	intron (NM_178587, intron 2 of 11)	intron (NM_178587, intron 2 of 11)	47652	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
33477	chr10	119073701	119073900	+	0	NA	exon (NM_003750, exon 2 of 22)	exon (NM_003750, exon 2 of 22)	7017	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
39797	chr11	61960471	61960650	+	0	NA	intron (NR_134580, intron 9 of 10)	AluSx1|SINE|Alu	5325	NM_001363591	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
226417	chr9	70490501	70490800	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-75993	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
185057	chr5	115978021	115978300	+	0	NA	intron (NM_173800, intron 1 of 19)	intron (NM_173800, intron 1 of 19)	15685	NM_173800	206338		NM_173800	ENSG00000172901	LVRN	APQ|AQPEP|TAQPEP	laeverin	protein-coding
151043	chr21	44651101	44651750	+	0	NA	intron (NM_144991, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	3234	NM_198698	386684		NM_198698	ENSG00000212933	KRTAP12-4	KRTAP12.4	keratin associated protein 12-4	protein-coding
162580	chr3	48679001	48679400	+	0	NA	intron (NM_184231, intron 9 of 12)	intron (NM_184231, intron 9 of 12)	6715	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
51154	chr12	50161001	50161200	+	0	NA	intron (NM_001281731, intron 1 of 10)	intron (NM_001281731, intron 1 of 10)	6269	NM_001331070	91012		NM_147190	ENSG00000139624	CERS5	LASS5|Trh4	ceramide synthase 5	protein-coding
223479	chr8	144054551	144054850	+	0	NA	exon (NM_017570, exon 19 of 27)	exon (NM_017570, exon 19 of 27)	2680	NR_106905	102465509		NR_106905	ENSG00000277888	MIR6846	hsa-mir-6846	microRNA 6846	ncRNA
76568	chr15	75267801	75268280	+	0	NA	intron (NM_001164404, intron 12 of 17)	intron (NM_001164404, intron 12 of 17)	9482	NM_001164404	653641		NM_001164404	ENSG00000167195	GOLGA6C	-	golgin A6 family member C	protein-coding
55705	chr12	107884771	107885330	+	0	NA	Intergenic	L1MC|LINE|L1	18721	NR_037629	728739		NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
194982	chr6	35362421	35362980	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	20142	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
32492	chr10	102707071	102707330	+	0	NA	intron (NM_004311, intron 1 of 5)	AluJb|SINE|Alu	7197	NM_004311	403		NM_004311	ENSG00000138175	ARL3	ARFL3|JBTS35|RP83	ADP ribosylation factor like GTPase 3	protein-coding
117553	chr19	21035971	21036330	+	0	NA	intron (NM_025189, intron 4 of 4)	intron (NM_025189, intron 4 of 4)	15493	NM_025189	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
186312	chr5	134581151	134581830	+	0	NA	3' UTR (NM_015288, exon 11 of 11)	3' UTR (NM_015288, exon 11 of 11)	51338	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
103887	chr17	79793501	79793700	+	0	NA	3' UTR (NM_020649, exon 5 of 5)	3' UTR (NM_020649, exon 5 of 5)	3477	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
215432	chr7	157684521	157685080	+	0	NA	intron (NM_130842, intron 11 of 21)	CpG	-110378	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
233889	chrX	1589471	1590680	+	0	NA	Intergenic	Intergenic	-1529	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
226591	chr9	73130201	73130800	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-21365	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
200911	chr6	139135701	139138080	+	0	NA	intron (NM_016217, intron 1 of 3)	AluSq4|SINE|Alu	1810	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
194213	chr6	32188151	32188550	+	0	NA	exon (NM_002586, exon 3 of 9).6	exon (NM_002586, exon 3 of 9).6	1852	NM_002586	5089		NM_002586	ENSG00000204304	PBX2	G17|HOX12|PBX2MHC	PBX homeobox 2	protein-coding
219646	chr8	80347771	80348500	+	0	NA	Intergenic	Intergenic	106746	NR_049894	100847056		NR_049894	ENSG00000265588	MIR5708	-	microRNA 5708	ncRNA
210578	chr7	100362221	100362900	+	0	NA	intron (NM_001371931, intron 4 of 4)	AluSz|SINE|Alu	4557	NM_178238	29990		NM_013440	ENSG00000121716	PILRB	FDFACT1|FDFACT2	paired immunoglobin like type 2 receptor beta	protein-coding
137782	chr2	199468671	199469750	+	0	NA	intron (NR_026830, intron 1 of 1)	CpG	1112	NR_026830	150538		NM_153031	ENSG00000225953	SATB2-AS1	-	SATB2 antisense RNA 1	ncRNA
119140	chr19	39376501	39376980	+	0	NA	exon (NM_001384584, exon 8 of 15)	exon (NM_001384584, exon 8 of 15)	14366	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
113316	chr19	8582171	8582930	+	0	NA	intron (NM_030957, intron 25 of 25)	intron (NM_030957, intron 25 of 25)	-5108	NM_012335	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
16037	chr1	152352671	152352830	+	0	NA	exon (NM_001014342, exon 3 of 3)	exon (NM_001014342, exon 3 of 3)	7256	NM_001014342	388698		NM_001014342	ENSG00000143520	FLG2	IFPS|PSS6	filaggrin 2	protein-coding
153396	chr22	24653071	24653300	+	0	NA	non-coding (NR_024494, exon 7 of 7)	non-coding (NR_024494, exon 7 of 7)	5962	NR_024593	646074		NM_001025230		POM121L10P	-	POM121 transmembrane nucleoporin like 10, pseudogene	pseudo
191052	chr6	3254121	3254950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4412	NM_001135750	389362		NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
235129	chrX	40933071	40933900	+	0	NA	Intergenic	Intergenic	-100289	NR_027761	100132831		NR_027761		TNIP2P1	-	TNIP2 pseudogene 1	pseudo
105127	chr17	82223821	82224680	+	0	NA	Intergenic	Intergenic	-4156	NM_001042422	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
26899	chr10	26443621	26443880	+	0	NA	intron (NM_019043, intron 2 of 14)	AluJb|SINE|Alu	5409	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
156425	chr22	41217301	41218100	+	0	NA	promoter-TSS (NR_148200)	promoter-TSS (NR_148200)	-73	NR_148200	100506544		NR_148200		L3MBTL2-AS1	-	L3MBTL2 antisense RNA 1	ncRNA
229463	chr9	121741271	121741630	+	0	NA	intron (NM_032552, intron 3 of 16)	intron (NM_032552, intron 3 of 16)	-1335	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
76739	chr15	76332521	76333200	+	0	NA	Intergenic	Intergenic	-3913	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
12124	chr1	100055821	100056080	+	0	NA	intron (NM_033055, intron 2 of 11)	AluSc|SINE|Alu	17855	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
23633	chr1	230306171	230306330	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	120082	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
82179	chr16	14932201	14932830	+	0	NA	intron (NR_146231, intron 25 of 38)	intron (NR_146231, intron 25 of 38)	1695	NR_107060	102465908		NR_107060	ENSG00000277698	MIR6770-2	hsa-mir-6770-2	microRNA 6770-2	ncRNA
177505	chr4	115274571	115274800	+	0	NA	Intergenic	Intergenic	-161065	NM_022569	64579		NM_022569	ENSG00000138653	NDST4	N-HSST|N-HSST 4|NDST-4|NHSST4	N-deacetylase and N-sulfotransferase 4	protein-coding
192517	chr6	25024951	25025330	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	17148	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
71002	chr14	104729551	104729850	+	0	NA	promoter-TSS (NM_001320424)	promoter-TSS (NM_001320424)	-144	NM_199165	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
198135	chr6	90460171	90460800	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	126587	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
61170	chr13	49110051	49111180	+	0	NA	intron (NM_014923, intron 1 of 23)	intron (NM_014923, intron 1 of 23)	298	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
165638	chr3	101786251	101786350	+	0	NA	intron (NR_145993, intron 4 of 6)	intron (NR_145993, intron 4 of 6)	6636	NM_001348998	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
174701	chr4	42568701	42569350	+	0	NA	intron (NM_001105529, intron 14 of 35)	intron (NM_001105529, intron 14 of 35)	88080	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
127539	chr2	42333671	42334650	+	0	NA	Intergenic	AluJb|SINE|Alu	25878	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
105292	chr17	82493851	82493950	+	0	NA	Intergenic	AluJb|SINE|Alu	-25832	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
66999	chr14	67357671	67358350	+	0	NA	intron (NM_015994, intron 1 of 8)	MER67B|LTR|ERV1	1794	NM_015994	51382		NM_015994	ENSG00000100554	ATP6V1D	ATP6M|VATD|VMA8	ATPase H+ transporting V1 subunit D	protein-coding
124861	chr2	8229551	8229950	+	0	NA	intron (NR_152741, intron 9 of 9)	ERV3-16A3_LTR|LTR|ERVL	98669	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
67582	chr14	71606151	71606250	+	0	NA	intron (NM_001354286, intron 6 of 24)	L1MA4A|LINE|L1	19902	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
95764	chr17	38667401	38668200	+	0	NA	Intergenic	Intergenic	7157	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
89653	chr16	89351621	89351880	+	0	NA	intron (NR_045839, intron 2 of 9)	L1MB7|LINE|L1	31298	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
103506	chr17	78421871	78422380	+	0	NA	intron (NR_110602, intron 8 of 8)	intron (NR_110602, intron 8 of 8)	43476	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
15413	chr1	150247451	150247950	+	0	NA	Intergenic	AluSp|SINE|Alu	-10074	NM_012113	23632		NM_012113	ENSG00000118298	CA14	CAXiV	carbonic anhydrase 14	protein-coding
67318	chr14	69621321	69621980	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	10054	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
83022	chr16	22298001	22299450	+	0	NA	intron (NM_001258035, intron 1 of 19).2	MIR|SINE|MIR	1316	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
160801	chr3	32994901	32995300	+	0	NA	Intergenic	Intergenic	43456	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
153368	chr22	24485701	24486000	+	0	NA	intron (NR_028483, intron 1 of 7)	L3|LINE|CR1	9224	NR_028483	646023		NM_001039784	ENSG00000178803	ADORA2A-AS1	C22orf45|hLinfRNA1	ADORA2A antisense RNA 1	ncRNA
53462	chr12	65825151	65825980	+	0	NA	intron (NM_003483, intron 1 of 4)	CpG	1082	NM_003483	8091		NM_003483	ENSG00000149948	HMGA2	BABL|HMGI-C|HMGIC|LIPO|SRS5|STQTL9	high mobility group AT-hook 2	protein-coding
47872	chr12	6667621	6667950	+	0	NA	exon (NM_133476, exon 10 of 10)	exon (NM_133476, exon 10 of 10)	-4666	NM_001127586	51147		NM_016162	ENSG00000111653	ING4	my036|p29ING4	inhibitor of growth family member 4	protein-coding
235994	chrX	54357471	54358230	+	0	NA	5' UTR (NM_001002838, exon 1 of 23)	5' UTR (NM_001002838, exon 1 of 23)	155	NM_020922	65267		NM_020922	ENSG00000196632	WNK3	MRXS2|PRKWNK3|PRS	WNK lysine deficient protein kinase 3	protein-coding
22017	chr1	210232371	210232880	+	0	NA	promoter-TSS (NM_001354173).2	promoter-TSS (NM_001354173).2	-171	NM_001354173	56256		NM_019605	ENSG00000082497	SERTAD4	DJ667H12.2	SERTA domain containing 4	protein-coding
193156	chr6	29648701	29648900	+	0	NA	Intergenic	Intergenic	-8292	NM_206814	4340		NM_002433	ENSG00000204655	MOG	BTN6|BTNL11|MOGIG2|NRCLP7	myelin oligodendrocyte glycoprotein	protein-coding
60220	chr13	40494701	40496100	+	0	NA	Intergenic	L1MD1|LINE|L1	-14394	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
23354	chr1	228148121	228148680	+	0	NA	exon (NM_000858, exon 8 of 9)	exon (NM_000858, exon 8 of 9)	-1530	NM_020435	57165		NM_020435	ENSG00000198835	GJC2	CX46.6|Cx47|GJA12|HLD2|LMPH1C|LMPHM3|PMLDAR|SPG44	gap junction protein gamma 2	protein-coding
22834	chr1	225426421	225427100	+	0	NA	intron (NM_194442, intron 1 of 13)	intron (NM_194442, intron 1 of 13)	1278	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
124955	chr2	8665671	8666030	+	0	NA	Intergenic	AluSx3|SINE|Alu	16011	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
68843	chr14	91288951	91289750	+	0	NA	intron (NM_001080414, intron 24 of 29)	intron (NM_001080414, intron 24 of 29)	-35470	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
128015	chr2	47163651	47163950	+	0	NA	intron (NM_001743, intron 2 of 5)	intron (NM_001743, intron 2 of 5)	-8492	NM_173649	285051		NM_173649	ENSG00000239605	STPG4	C2orf61|GSE	sperm-tail PG-rich repeat containing 4	protein-coding
116841	chr19	18592221	18592700	+	0	NA	TTS (NM_001100418)	TTS (NM_001100418)	3662	NM_001100418	55049		NM_017967	ENSG00000006015	REX1BD	C19orf60	required for excision 1-B domain containing	protein-coding
175977	chr4	81493021	81493280	+	0	NA	Intergenic	Intergenic	-21243	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
177164	chr4	108145601	108145800	+	0	NA	intron (NM_016269, intron 3 of 11)	L1MB8|LINE|L1	21097	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
135144	chr2	157446871	157448200	+	0	NA	Intergenic	Intergenic	-3446	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
36259	chr11	3781251	3781780	+	0	NA	intron (NR_157590, intron 2 of 31)	(A)n|Simple_repeat|Simple_repeat	16031	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
72794	chr15	40040571	40040830	+	0	NA	intron (NR_040059, intron 1 of 3)	L2a|LINE|L2	1389	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
48436	chr12	9697651	9698150	+	0	NA	non-coding (NR_036693, exon 4 of 4)	non-coding (NR_036693, exon 4 of 4)	28187	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
160665	chr3	31980451	31981000	+	0	NA	intron (NM_001174060, intron 1 of 10)	CpG	-1025	NM_001137674	344787		NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
35645	chr11	1843951	1844750	+	0	NA	Intergenic	Intergenic	4143	NM_001145841	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
85537	chr16	53090821	53091380	+	0	NA	intron (NR_168114, intron 2 of 2)	intron (NR_168114, intron 2 of 2)	36109	NR_168120	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
124605	chr2	951771	952130	+	0	NA	promoter-TSS (NR_136151)	promoter-TSS (NR_136151)	-558	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
121085	chr19	45890421	45891250	+	0	NA	exon (NM_001012643, exon 3 of 3)	exon (NM_001012643, exon 3 of 3)	-4694	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
151349	chr21	45678751	45679050	+	0	NA	intron (NM_001382286, intron 2 of 16)	Tigger1|DNA|TcMar-Tigger	35175	NM_001348240	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
159934	chr3	17039321	17039900	+	0	NA	intron (NM_015184, intron 3 of 5)	intron (NM_015184, intron 3 of 5)	106414	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
108420	chr18	69945521	69946300	+	0	NA	intron (NM_001303619, intron 1 of 4)	THE1B|LTR|ERVL-MaLR	1963	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
213286	chr7	134946271	134946630	+	0	NA	intron (NM_033140, intron 4 of 11)	L1MB2|LINE|L1	-40058	NM_001367817	340351		NM_178563	ENSG00000146856	AGBL3	CCP3	AGBL carboxypeptidase 3	protein-coding
167852	chr3	134232071	134232750	+	0	NA	intron (NM_001005861, intron 1 of 14)	intron (NM_001005861, intron 1 of 14)	18334	NM_001005861	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
158224	chr22	50274201	50274930	+	0	NA	TTS (NM_001376884)	TTS (NM_001376884)	-4185	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
223836	chr8	145026701	145026930	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-23916	NR_023392	286101		NR_023392		ZNF252P	ZNF252	zinc finger protein 252, pseudogene	pseudo
150923	chr21	44240371	44241900	+	0	NA	promoter-TSS (NM_001363770).2	promoter-TSS (NM_001363770).2	-169	NM_001363770	102723996		NM_001363770	ENSG00000277117	LOC102723996	-	ICOS ligand	protein-coding
63584	chr14	20473071	20473230	+	0	NA	intron (NM_000270, intron 2 of 5)	intron (NM_000270, intron 2 of 5)	3744	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
88751	chr16	86555011	86556180	+	0	NA	promoter-TSS (NR_027489)	promoter-TSS (NR_027489)	275	NR_026674	146512		NM_153017	ENSG00000280278	FLJ30679	-	uncharacterized protein FLJ30679	ncRNA
67786	chr14	73754101	73754900	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-4247	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
183392	chr5	77762871	77763030	+	0	NA	intron (NM_001297738, intron 1 of 2)	intron (NM_001297738, intron 1 of 2)	13389	NM_004607	6902		NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
14366	chr1	144101471	144101830	+	0	NA	Intergenic	(TGGCTGGCT)n|Simple_repeat|Simple_repeat	-128131	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
98497	chr17	47321821	47322930	+	0	NA	intron (NR_110880, intron 1 of 2)	L1MA7|LINE|L1	1238	NR_110881	102724508		NR_110880	ENSG00000263293	EFCAB13-DT	THCAT158	EFCAB13 divergent transcript	ncRNA
164998	chr3	71358271	71358630	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-53679	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
160350	chr3	27729301	27729500	+	0	NA	Intergenic	Intergenic	-6685	NM_001278183	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
62770	chr13	108268321	108269000	+	0	NA	promoter-TSS (NM_001145645)	promoter-TSS (NM_001145645)	-969	NM_001145645	10673		NM_006573	ENSG00000102524	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4	TNF superfamily member 13b	protein-coding
97356	chr17	43296061	43296900	+	0	NA	TTS (NR_002716).9	TTS (NR_002716).9	135	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
44790	chr11	113242701	113242900	+	0	NA	intron (NM_001076682, intron 15 of 18)	intron (NM_001076682, intron 15 of 18)	31101	NR_034101	100288346		NR_034101		NCAM1-AS1	-	NCAM1 antisense RNA1	ncRNA
238311	chrX	149502921	149504700	+	0	NA	intron (NM_006123, intron 2 of 7)	intron (NM_006123, intron 2 of 7)	1496	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
223511	chr8	144099801	144100000	+	0	NA	intron (NM_030974, intron 3 of 8)	intron (NM_030974, intron 3 of 8)	3873	NR_038270	81858		NM_030974	ENSG00000179526	SHARPIN	AIFID|SIPL1	SHANK associated RH domain interactor	protein-coding
16489	chr1	154758401	154758800	+	0	NA	intron (NM_001204087, intron 3 of 8)	intron (NM_001204087, intron 3 of 8)	101276	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
111539	chr19	4030501	4031780	+	0	NA	intron (NM_015897, intron 7 of 10)	intron (NM_015897, intron 7 of 10)	23404	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
9891	chr1	54359801	54360000	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	46494	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
43874	chr11	88334221	88334480	+	0	NA	intron (NM_148170, intron 2 of 3)	intron (NM_148170, intron 2 of 3)	3386	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
105038	chr17	82059101	82059930	+	0	NA	intron (NM_022156, intron 11 of 13)	intron (NM_022156, intron 11 of 13)	6289	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
156316	chr22	40638621	40638880	+	0	NA	Intergenic	AluY|SINE|Alu	-2031	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
77777	chr15	85896421	85896980	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	71065	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
116396	chr19	17963071	17963430	+	0	NA	intron (NM_002248, intron 2 of 10)	AluY|SINE|Alu	11948	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
103702	chr17	78821101	78821380	+	0	NA	intron (NR_169585, intron 7 of 19)	intron (NR_169585, intron 7 of 19)	19574	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
113425	chr19	9784651	9786600	+	0	NA	intron (NM_001353800, intron 1 of 6)	CpG	558	NM_001353800	162993		NM_001077624	ENSG00000196605	ZNF846	-	zinc finger protein 846	protein-coding
234634	chrX	19889571	19890730	+	0	NA	Intergenic	Intergenic	-2550	NM_001353892	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
207809	chr7	50303521	50304600	+	0	NA	promoter-TSS (NM_001291839)	promoter-TSS (NM_001291839)	-4	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
137807	chr2	199978171	199978330	+	0	NA	Intergenic	Intergenic	-22759	NM_001039693	129450		NM_152382	ENSG00000162971	TYW5	C2orf60|hTYW5	tRNA-yW synthesizing protein 5	protein-coding
44765	chr11	112225721	112227230	+	0	NA	promoter-TSS (NM_000317)	promoter-TSS (NM_000317)	47	NM_000317	5805		NM_000317	ENSG00000150787	PTS	PTPS	6-pyruvoyltetrahydropterin synthase	protein-coding
87024	chr16	68267171	68267600	+	0	NA	intron (NM_003983, intron 2 of 10)	AluSq2|SINE|Alu	2859	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
125747	chr2	20675651	20676250	+	0	NA	3' UTR (NM_182828, exon 2 of 2)	3' UTR (NM_182828, exon 2 of 2)	8806	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
94626	chr17	29909651	29909980	+	0	NA	intron (NM_001282129, intron 1 of 15)	intron (NM_001282129, intron 1 of 15)	-20088	NM_001145053	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
17079	chr1	156124501	156125700	+	0	NA	intron (NM_170707, intron 1 of 11)	intron (NM_170707, intron 1 of 11)	-1070	NM_001282624	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
57464	chr12	122005401	122005600	+	0	NA	Intergenic	(GGTCAT)n|Simple_repeat|Simple_repeat	-16384	NM_020993	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
149065	chr21	15552871	15553300	+	0	NA	Intergenic	Intergenic	-176849	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
231381	chr9	130695351	130696000	+	0	NA	intron (NM_001282709, intron 2 of 7)	intron (NM_001282709, intron 2 of 7)	1895	NM_014285	23404		NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|SHRF|hRrp4p|p7	exosome component 2	protein-coding
49159	chr12	14957721	14958180	+	0	NA	intron (NM_001321420, intron 1 of 6)	intron (NM_001321420, intron 1 of 6)	3330	NM_001321421	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
176873	chr4	102627701	102628300	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-125514	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
25564	chr10	7585271	7585430	+	0	NA	intron (NM_032817, intron 4 of 9)	intron (NM_032817, intron 4 of 9)	34323	NM_032817	80760		NM_030569	ENSG00000123243	ITIH5	ITI-HC5|PP14776	inter-alpha-trypsin inhibitor heavy chain 5	protein-coding
71194	chr14	105060401	105061100	+	0	NA	intron (NM_001278694, intron 1 of 4)	intron (NM_001278694, intron 1 of 4)	4680	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
175124	chr4	54971421	54971700	+	0	NA	Intergenic	Intergenic	154035	NM_002253	3791		NM_002253	ENSG00000128052	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor	protein-coding
27352	chr10	30699651	30700330	+	0	NA	intron (NR_036438, intron 4 of 9)	intron (NR_036438, intron 4 of 9)	7716	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
102363	chr17	75518081	75519150	+	0	NA	intron (NM_207346, intron 5 of 10)	intron (NM_207346, intron 5 of 10)	2087	NM_207346	283989		NM_207346	ENSG00000182173	TSEN54	PCH2A|PCH4|PCH5|SEN54L|sen54	tRNA splicing endonuclease subunit 54	protein-coding
82867	chr16	21530771	21531330	+	0	NA	Intergenic	L2a|LINE|L2	-10606	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
93008	chr17	17207801	17209250	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2192	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
233253	chr9	137273971	137274950	+	0	NA	TTS (NM_015456)	TTS (NM_015456)	-3266	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
173884	chr4	24563671	24564150	+	0	NA	intron (NM_001358, intron 3 of 13)	AluY|SINE|Alu	20644	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
11212	chr1	88865651	88865750	+	0	NA	intron (NM_001514, intron 2 of 6)	AluSp|SINE|Alu	25867	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
195871	chr6	41560421	41561930	+	0	NA	intron (NM_138457, intron 1 of 16)	intron (NM_138457, intron 1 of 16)	-12554	NR_126415	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
223497	chr8	144077001	144077200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1572	NM_019037	54512		NM_019037	ENSG00000178896	EXOSC4	RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A	exosome component 4	protein-coding
234733	chrX	21944071	21944230	+	0	NA	intron (NM_004595, intron 1 of 10)	intron (NM_004595, intron 1 of 10)	3441	NM_004595	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
117085	chr19	19134651	19135700	+	0	NA	intron (NM_017814, intron 1 of 11)	intron (NM_017814, intron 1 of 11)	3303	NM_017814	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
100065	chr17	58170371	58170850	+	0	NA	TTS (NM_001004707)	TTS (NM_001004707)	954	NM_001004707	124538		NM_001004707	ENSG00000255713	OR4D2	BC2009|OR17-24	olfactory receptor family 4 subfamily D member 2	protein-coding
24622	chr1	246572771	246573130	+	0	NA	intron (NM_001139459, intron 1 of 8)	intron (NM_001139459, intron 1 of 8)	6494	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
153841	chr22	30100621	30101100	+	0	NA	intron (NM_152510, intron 3 of 10)	L1PA8|LINE|L1	20396	NM_001329458	150280		NM_152510	ENSG00000176635	HORMAD2	CT46.2	HORMA domain containing 2	protein-coding
175999	chr4	81919271	81919450	+	0	NA	Intergenic	Tigger16a|DNA|TcMar-Tigger	-447453	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
78385	chr15	91861671	91862230	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	7646	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
122528	chr19	49627871	49628030	+	0	NA	Intergenic	Intergenic	12193	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
138281	chr2	203705121	203705630	+	0	NA	Intergenic	Intergenic	-1100	NM_001243078	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
204780	chr7	5612851	5613230	+	0	NA	Intergenic	Intergenic	20224	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
50148	chr12	45736071	45736230	+	0	NA	intron (NM_152641, intron 3 of 20)	AluSc8|SINE|Alu	6441	NM_001347839	196528		NM_152641	ENSG00000189079	ARID2	BAF200|CSS6|SMARCF3|ZIPZAP|p200	AT-rich interaction domain 2	protein-coding
218763	chr8	58965271	58965450	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	153787	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
42673	chr11	72589821	72590750	+	0	NA	intron (NM_001243784, intron 8 of 30)	CpG	19629	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
64693	chr14	32934271	32934850	+	0	NA	Intergenic	CpG	-4319	NM_173159	64067		NM_022123	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
169829	chr3	177146071	177147500	+	0	NA	intron (NM_001374329, intron 1 of 15)	Charlie1a|DNA|hAT-Charlie	49693	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
212681	chr7	129634771	129634930	+	0	NA	intron (NM_001040110, intron 1 of 10)	intron (NM_001040110, intron 1 of 10)	4772	NM_001040110	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
22140	chr1	212014521	212015180	+	0	NA	intron (NM_015434, intron 4 of 19)	SVA_B|Retroposon|SVA	-20703	NM_001286230	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
4519	chr1	21785901	21786300	+	0	NA	Intergenic	MER41B|LTR|ERV1	-2901	NM_001330394	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
96652	chr17	40619671	40620950	+	0	NA	Intergenic	Intergenic	27508	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
50841	chr12	49120251	49120550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9500	NM_001300751	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
84033	chr16	29515921	29516180	+	0	NA	Intergenic	Intergenic	-10176	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
85948	chr16	57200421	57200800	+	0	NA	intron (NM_001305163, intron 1 of 14)	SVA_D|Retroposon|SVA	14281	NM_001305164	89970		NM_133368	ENSG00000159579	RSPRY1	SEMDFA	ring finger and SPRY domain containing 1	protein-coding
1059	chr1	1900371	1900730	+	0	NA	Intergenic	AluY|SINE|Alu	9370	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
31345	chr10	93115751	93116400	+	0	NA	Intergenic	(AGGAGG)n|Simple_repeat|Simple_repeat	42182	NM_000783	1592		NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	cytochrome P450 family 26 subfamily A member 1	protein-coding
131211	chr2	95061501	95062200	+	0	NA	Intergenic	Intergenic	36142	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
52754	chr12	56652451	56652750	+	0	NA	Intergenic	Intergenic	-6616	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
324	chr1	982401	982830	+	0	NA	promoter-TSS (NM_001291367)	promoter-TSS (NM_001291367)	-522	NM_001291366	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
190054	chr5	177582801	177583200	+	0	NA	Intergenic	AluYf1|SINE|Alu	-9203	NM_017510	54732		NM_017510	ENSG00000184840	TMED9	GMP25|HSGP25L2G|p24a2|p24alpha2|p25	transmembrane p24 trafficking protein 9	protein-coding
38016	chr11	35110851	35111150	+	0	NA	Intergenic	MIRc|SINE|MIR	27032	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
158409	chr22	50528651	50529100	+	0	NA	intron (NM_001257989, intron 3 of 9)	intron (NM_001257989, intron 3 of 9)	1137	NM_001113755	1890		NM_001953	ENSG00000025708	TYMP	ECGF|ECGF1|MEDPS1|MNGIE|MTDPS1|PDECGF|TP|hPD-ECGF	thymidine phosphorylase	protein-coding
143375	chr20	26340401	26340800	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-131367	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
222984	chr8	143225871	143226050	+	0	NA	Intergenic	Intergenic	12742	NM_178172	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
232067	chr9	133475751	133476050	+	0	NA	intron (NM_017585, intron 4 of 9)	Charlie15a|DNA|hAT-Charlie	3199	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
102069	chr17	74924651	74925450	+	0	NA	intron (NM_178160, intron 2 of 6)	intron (NM_178160, intron 2 of 6)	777	NM_178160	92736		NM_178160	ENSG00000183034	OTOP2	-	otopetrin 2	protein-coding
29367	chr10	69696101	69696330	+	0	NA	Intergenic	MER119|DNA|hAT-Charlie	65968	NM_145306	219738		NM_145306	ENSG00000171224	FAM241B	C10orf35	family with sequence similarity 241 member B	protein-coding
124348	chr19	58326171	58328450	+	0	NA	promoter-TSS (NR_144444)	promoter-TSS (NR_144444)	-62	NR_144444	105372480		NR_144444		LOC105372480	-	uncharacterized LOC105372480	ncRNA
143840	chr20	32516871	32517480	+	0	NA	intron (NM_001256798, intron 3 of 10)	intron (NM_001256798, intron 3 of 10)	7216	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
19530	chr1	176208951	176209250	+	0	NA	Intergenic	MER65A|LTR|ERV1	-1814	NM_022457	64326		NM_022457	ENSG00000143207	COP1	CFAP78|FAP78|RFWD2|RNF200	COP1 E3 ubiquitin ligase	protein-coding
65407	chr14	50819301	50819730	+	0	NA	intron (NM_020921, intron 3 of 30)	THE1B|LTR|ERVL-MaLR	-2282	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
228855	chr9	112321221	112321600	+	0	NA	intron (NM_001375918, intron 1 of 13)	AluSg|SINE|Alu	11616	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
97198	chr17	42691001	42691680	+	0	NA	intron (NM_003632, intron 14 of 23)	intron (NM_003632, intron 14 of 23)	8809	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
120656	chr19	45084551	45084850	+	0	NA	TTS (NR_134887)	TTS (NR_134887)	5440	NM_001007269	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
3062	chr1	12170151	12170250	+	0	NA	intron (NM_001066, intron 1 of 9)	L2b|LINE|L2	3209	NM_001066	7133		NM_001066	ENSG00000028137	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	TNF receptor superfamily member 1B	protein-coding
235272	chrX	41837351	41837450	+	0	NA	intron (NM_001126055, intron 2 of 24)	L1MD2|LINE|L1	85634	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
55133	chr12	98604651	98605150	+	0	NA	3' UTR (NM_002635, exon 8 of 8)	3' UTR (NM_002635, exon 8 of 8)	5265	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
218664	chr8	57894201	57894630	+	0	NA	Intergenic	L1MC3|LINE|L1	-83943	NR_130934	100505477		NR_130934	ENSG00000205293	LINC01602	T1560	long intergenic non-protein coding RNA 1602	ncRNA
29678	chr10	72045121	72045380	+	0	NA	Intergenic	AluJo|SINE|Alu	43301	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
220150	chr8	94946371	94947650	+	0	NA	intron (NR_148905, intron 2 of 5)	intron (NR_148905, intron 2 of 5)	2368	NM_001135733	94241		NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
172936	chr4	3516121	3516530	+	0	NA	intron (NR_110005, intron 5 of 7)	intron (NR_110005, intron 5 of 7)	15824	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
167919	chr3	136172821	136173330	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSz6|SINE|Alu	21393	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
138000	chr2	201257901	201259280	+	0	NA	intron (NM_001080125, intron 1 of 8)	intron (NM_001080125, intron 1 of 8)	555	NR_111983	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
203354	chr6	170298621	170299050	+	0	NA	intron (NM_001286380, intron 1 of 10)	intron (NM_001286380, intron 1 of 10)	3514	NM_001286380	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
26656	chr10	22596401	22597800	+	0	NA	intron (NM_001330062, intron 3 of 9)	intron (NM_001330062, intron 3 of 9)	117008	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
164966	chr3	71275401	71275800	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-14158	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
137586	chr2	197273751	197275630	+	0	NA	intron (NR_046837, intron 5 of 5)	LTR16A|LTR|ERVL	27829	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
91540	chr17	5000271	5001030	+	0	NA	intron (NM_006612, intron 3 of 22)	intron (NM_006612, intron 3 of 22)	2700	NM_006612	10749		NM_006612	ENSG00000129250	KIF1C	LTXS1|SATX2|SAX2|SPAX2|SPG58	kinesin family member 1C	protein-coding
121553	chr19	47253601	47254350	+	0	NA	Intergenic	AluSq|SINE|Alu	-2550	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
132264	chr2	104378851	104379150	+	0	NA	non-coding (NR_037885, exon 3 of 3)	non-coding (NR_037885, exon 3 of 3)	29332	NR_037885	100287010		NR_037885		LOC100287010	-	uncharacterized LOC100287010	ncRNA
120906	chr19	45600171	45600780	+	0	NA	intron (NM_005282, intron 1 of 1)	intron (NM_005282, intron 1 of 1)	1737	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
24275	chr1	236451951	236452330	+	0	NA	intron (NM_080738, intron 4 of 5)	LTR78B|LTR|ERV1	56727	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
70508	chr14	102295471	102295630	+	0	NA	intron (NR_148552, intron 1 of 9)	intron (NR_148552, intron 1 of 9)	9614	NM_014226	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
11724	chr1	91882071	91882730	+	0	NA	intron (NM_001195684, intron 2 of 17)	AluSz|SINE|Alu	3751	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
80933	chr16	3819121	3819430	+	0	NA	intron (NM_004380, intron 2 of 30)	MIR|SINE|MIR	60845	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
81779	chr16	11522551	11522650	+	0	NA	intron (NM_001370704, intron 2 of 66)	MIR|SINE|MIR	4647	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
197332	chr6	73392501	73392700	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2228	NM_018665	55510		NM_018665	ENSG00000080007	DDX43	CT13|HAGE	DEAD-box helicase 43	protein-coding
59237	chr13	23817901	23818280	+	0	NA	intron (NM_005932, intron 14 of 18)	intron (NM_005932, intron 14 of 18)	-70778	NM_001014442								
85771	chr16	56929621	56930150	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2257	NM_001010989	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
116368	chr19	17889671	17889830	+	0	NA	intron (NM_000453, intron 13 of 14)	intron (NM_000453, intron 13 of 14)	17805	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
228961	chr9	113499621	113500080	+	0	NA	intron (NM_144488, intron 11 of 25)	MER3|DNA|hAT-Charlie	-1577	NM_001276261	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
202962	chr6	161243061	161243900	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	30581	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
97891	chr17	45110221	45110750	+	0	NA	3' UTR (NM_133373, exon 15 of 15)	3' UTR (NM_133373, exon 15 of 15)	3948	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
97405	chr17	43390671	43390830	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1852	NR_027413	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
107167	chr18	35379171	35379330	+	0	NA	Intergenic	Intergenic	-1913	NM_001322291	252884		NM_145756	ENSG00000186496	ZNF396	ZSCAN14	zinc finger protein 396	protein-coding
183143	chr5	75034221	75035300	+	0	NA	intron (NM_001366737, intron 3 of 3)	intron (NM_001366737, intron 3 of 3)	17798	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
237169	chrX	107673701	107675050	+	0	NA	Intergenic	Intergenic	42133	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
105974	chr18	5425051	5425150	+	0	NA	intron (NM_001384691, intron 9 of 20)	intron (NM_001384691, intron 9 of 20)	96279	NM_001384684	23136		NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1 like 3	protein-coding
134610	chr2	144384901	144385100	+	0	NA	3' UTR (NM_001171653, exon 9 of 9)	3' UTR (NM_001171653, exon 9 of 9)	-51931	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
110187	chr19	1673571	1674930	+	0	NA	Intergenic	Intergenic	-21635	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
234116	chrX	9565901	9566730	+	0	NA	intron (NM_001139468, intron 3 of 17)	MER20|DNA|hAT-Charlie	101257	NM_005647	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
185281	chr5	126424551	126425230	+	0	NA	intron (NR_146195, intron 1 of 15)	MIR|SINE|MIR	1481	NM_001349542	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
132786	chr2	109987071	109988060	+	0	NA	non-coding (NR_046110, exon 2 of 4)	non-coding (NR_046110, exon 2 of 4)	585	NR_046112	440894		NR_046110	ENSG00000204588	LINC01123	-	long intergenic non-protein coding RNA 1123	ncRNA
833	chr1	1578321	1579180	+	0	NA	Intergenic	MER52A|LTR|ERV1	-3887	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
230603	chr9	128594801	128595200	+	0	NA	intron (NM_001375310, intron 24 of 57)	AluSq2|SINE|Alu	42413	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
186737	chr5	139297701	139297900	+	0	NA	intron (NM_001194956, intron 1 of 13)	intron (NM_001194956, intron 1 of 13)	4050	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
12302	chr1	100902471	100902630	+	0	NA	intron (NM_133496, intron 2 of 10)	MLT1C|LTR|ERVL-MaLR	6460	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
189198	chr5	171427101	171427830	+	0	NA	intron (NM_003862, intron 2 of 4)	MIRb|SINE|MIR	7818	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
96917	chr17	42148651	42148950	+	0	NA	intron (NM_201434, intron 1 of 6)	L2b|LINE|L2	6189	NM_201434	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
215842	chr8	6890371	6890530	+	0	NA	Intergenic	Intergenic	-12514	NM_005218	1672		NM_005218	ENSG00000164825	DEFB1	BD1|DEFB-1|DEFB101|HBD1	defensin beta 1	protein-coding
93173	chr17	17795351	17796500	+	0	NA	exon (NM_030665, exon 3 of 6)	exon (NM_030665, exon 3 of 6)	-16396	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
12971	chr1	110892021	110892480	+	0	NA	intron (NM_001040033, intron 3 of 8)	intron (NM_001040033, intron 3 of 8)	19102	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
9649	chr1	52606321	52606980	+	0	NA	intron (NM_015696, intron 1 of 2)	intron (NM_015696, intron 1 of 2)	4279	NM_015696	2882		NM_015696	ENSG00000116157	GPX7	CL683|GPX6|GPx-7|GSHPx-7|NPGPx	glutathione peroxidase 7	protein-coding
231506	chr9	131402451	131402950	+	0	NA	intron (NM_013318, intron 1 of 31)	L2a|LINE|L2	8614	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
79262	chr16	487651	488080	+	0	NA	intron (NM_001370401, intron 4 of 14)	intron (NM_001370401, intron 4 of 14)	12941	NM_001142272	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
73089	chr15	40936671	40937330	+	0	NA	intron (NM_019074, intron 9 of 10)	intron (NM_019074, intron 9 of 10)	7660	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
230953	chr9	129422351	129422730	+	0	NA	Intergenic	Intergenic	-66120	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
205926	chr7	25860401	25861150	+	0	NA	Intergenic	Intergenic	-70656	NR_157808	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
194778	chr6	34153421	34153680	+	0	NA	intron (NM_001256809, intron 1 of 8)	intron (NM_001256809, intron 1 of 8)	2072	NM_001256809	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
174382	chr4	39027101	39027930	+	0	NA	intron (NM_001303228, intron 1 of 6)	intron (NM_001303228, intron 1 of 6)	4894	NM_024943	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
13787	chr1	117361921	117362700	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-5139	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
137978	chr2	201205671	201205830	+	0	NA	intron (NM_001206524, intron 6 of 7)	intron (NM_001206524, intron 6 of 7)	22609	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
24755	chr1	248822451	248822750	+	0	NA	intron (NM_001322462, intron 1 of 8)	intron (NM_001322462, intron 1 of 8)	2766	NM_001322463	80851		NM_030645	ENSG00000175137	SH3BP5L	-	SH3 binding domain protein 5 like	protein-coding
129625	chr2	70126971	70127650	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-1994	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
85251	chr16	48403451	48403550	+	0	NA	Intergenic	Intergenic	-18087	NM_003031	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
237010	chrX	102450851	102450950	+	0	NA	Intergenic	L1PA3|LINE|L1	-10892	NM_001099686	728343		NM_001099686	ENSG00000269437	NXF2B	TCP11X2|bA353J17.1	nuclear RNA export factor 2B	protein-coding
81259	chr16	4618571	4618730	+	0	NA	Intergenic	MIRb|SINE|MIR	-3762	NM_001330467	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
141395	chr2	240835721	240836180	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-14547	NM_001379653	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
173011	chr4	4387601	4389230	+	0	NA	intron (NM_001382227, intron 3 of 5)	intron (NM_001382227, intron 3 of 5)	1313	NM_001382227	27065		NM_014392	ENSG00000168824	NSG1	D4S234|D4S234E|NEEP21|P21	neuronal vesicle trafficking associated 1	protein-coding
45554	chr11	118781721	118782050	+	0	NA	intron (NM_004397, intron 2 of 13)	AluSz|SINE|Alu	9063	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
79591	chr16	1028871	1029230	+	0	NA	Intergenic	(CTGCCC)n|Simple_repeat|Simple_repeat	-43706	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
153223	chr22	23960471	23961330	+	0	NA	promoter-TSS (NM_001355).2	promoter-TSS (NM_001355).2	295	NM_001080843	653689		NM_001080843	ENSG00000133433	GSTT2B	GSTT2P	glutathione S-transferase theta 2B	protein-coding
29169	chr10	68827901	68828850	+	0	NA	intron (NM_001130160, intron 1 of 2)	CpG	838	NM_001130160	219736		NM_152709	ENSG00000165730	STOX1	C10orf24	storkhead box 1	protein-coding
184894	chr5	112848251	112848830	+	0	NA	Intergenic	AluJr|SINE|Alu	-12648	NM_001204194	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
190440	chr5	179843321	179843780	+	0	NA	intron (NM_001017987, intron 2 of 4).2	AluJo|SINE|Alu	15267	NM_016175	51149		NM_016175	ENSG00000161010	MRNIP	C5orf45	MRN complex interacting protein	protein-coding
164612	chr3	66312051	66312630	+	0	NA	intron (NR_028475, intron 5 of 9)	L1PA8|LINE|L1	91337	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
47362	chr12	2255851	2256050	+	0	NA	intron (NM_199460, intron 3 of 49)	intron (NM_199460, intron 3 of 49)	-13826	NR_046769	100874370		NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
53995	chr12	75360821	75361100	+	0	NA	intron (NM_001304964, intron 3 of 5)	LTR28C|LTR|ERV1	26290	NM_152779	256710		NM_152779	ENSG00000173401	GLIPR1L1	ALKN2972|PRO7434	GLIPR1 like 1	protein-coding
127728	chr2	43538271	43538630	+	0	NA	intron (NR_144316, intron 21 of 36)	intron (NR_144316, intron 21 of 36)	57524	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
153347	chr22	24419371	24419750	+	0	NA	intron (NR_103546, intron 18 of 19)	MIR3|SINE|MIR	-4037	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
179721	chr5	165121	165450	+	0	NA	intron (NM_052909, intron 13 of 19)	CpG	-26210	NM_001080478	389257		NM_001080478	ENSG00000185028	LRRC14B	-	leucine rich repeat containing 14B	protein-coding
206291	chr7	30061751	30062150	+	0	NA	exon (NM_001197027, exon 11 of 14)	exon (NM_001197027, exon 11 of 14)	16865	NM_001363474	84725		NM_032639	ENSG00000106086	PLEKHA8	FAPP2	pleckstrin homology domain containing A8	protein-coding
37737	chr11	31804971	31805400	+	0	NA	promoter-TSS (NM_001368908)	promoter-TSS (NM_001368908)	-144	NM_001368908	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
217499	chr8	29056451	29057080	+	0	NA	Intergenic	Intergenic	165451	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
230704	chr9	128769971	128770280	+	0	NA	intron (NM_001375956, intron 1 of 15)	AluSq2|SINE|Alu	1802	NM_006336	10444		NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related cell cycle regulator	protein-coding
7366	chr1	32816981	32818520	+	0	NA	promoter-TSS (NM_022753)	promoter-TSS (NM_022753)	97	NM_022753	64766		NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding
7481	chr1	33147771	33148130	+	0	NA	intron (NM_001330483, intron 4 of 4)	L2b|LINE|L2	28600	NM_001330483	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
185000	chr5	115177551	115177850	+	0	NA	3' UTR (NM_001017398, exon 2 of 2)	3' UTR (NM_001017398, exon 2 of 2)	2594	NM_001300752	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
12748	chr1	109616901	109618100	+	0	NA	intron (NM_001379232, intron 1 of 8)	intron (NM_001379232, intron 1 of 8)	2116	NM_001377295	2780		NM_005272	ENSG00000134183	GNAT2	ACHM4|GNATC|HG1D	G protein subunit alpha transducin 2	protein-coding
28984	chr10	63260451	63260550	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	8723	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
219697	chr8	80873601	80875330	+	0	NA	promoter-TSS (NM_001367783)	promoter-TSS (NM_001367783)	3	NM_001367783	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
195520	chr6	37229171	37229930	+	0	NA	intron (NM_145316, intron 1 of 3)	AluY|SINE|Alu	28049	NM_001371555	221468		NM_145316	ENSG00000172738	TMEM217	C6orf128|dJ355M6.2	transmembrane protein 217	protein-coding
45042	chr11	117041171	117041680	+	0	NA	intron (NM_001281748, intron 1 of 24)	MER103C|DNA|hAT-Charlie	57003	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
168002	chr3	136802571	136802730	+	0	NA	Intergenic	Intergenic	-16369	NM_001097600	80723		NM_025246	ENSG00000168917	SLC35G2	TMEM22	solute carrier family 35 member G2	protein-coding
53960	chr12	72017071	72017300	+	0	NA	intron (NM_173353, intron 8 of 10)	intron (NM_173353, intron 8 of 10)	78340	NM_173353	121278		NM_173353	ENSG00000139287	TPH2	ADHD7|NTPH	tryptophan hydroxylase 2	protein-coding
52274	chr12	54547151	54547480	+	0	NA	3' UTR (NM_005337, exon 31 of 31)	3' UTR (NM_005337, exon 31 of 31)	-2078	NM_001288768	5153		NM_000924	ENSG00000123360	PDE1B	HEL-S-79p|PDE1B1|PDES1B	phosphodiesterase 1B	protein-coding
102110	chr17	75008151	75008850	+	0	NA	Intergenic	Intergenic	-4170	NM_001303265	3396		NM_001545	ENSG00000167862	MRPL58	DS-1|DS1|ICT1|MRP-L58|mL62	mitochondrial ribosomal protein L58	protein-coding
147403	chr20	58830201	58830600	+	0	NA	intron (NR_002785, intron 4 of 4)	(ACC)n|Simple_repeat|Simple_repeat	-9348	NM_016592	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
10154	chr1	61042871	61043580	+	0	NA	Intergenic	CpG	-34002	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
87394	chr16	70494601	70495000	+	0	NA	intron (NR_158212, intron 12 of 18)	intron (NR_158212, intron 12 of 18)	28754	NM_001195139	25839		NM_015386	ENSG00000103051	COG4	CDG2J|COD1|SWILS	component of oligomeric golgi complex 4	protein-coding
202616	chr6	158738701	158739100	+	0	NA	intron (NM_001318745, intron 8 of 14)	AluSz|SINE|Alu	25853	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
116431	chr19	18018851	18019350	+	0	NA	Intergenic	L2a|LINE|L2	10930	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
68884	chr14	91329571	91329730	+	0	NA	intron (NM_001080414, intron 10 of 29)	MIR|SINE|MIR	-75770	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
237237	chrX	109886171	109886350	+	0	NA	Intergenic	Intergenic	15859	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
107239	chr18	37322501	37322700	+	0	NA	intron (NR_148519, intron 2 of 12)	intron (NR_148519, intron 2 of 12)	48140	NR_134588	105372068		NR_134588	ENSG00000267202	LOC105372068	-	uncharacterized LOC105372068	ncRNA
125592	chr2	16671801	16672000	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-6066	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
175670	chr4	76977871	76978430	+	0	NA	intron (NM_018243, intron 1 of 9)	intron (NM_018243, intron 1 of 9)	28398	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
221477	chr8	124483301	124484530	+	0	NA	intron (NM_007218, intron 1 of 1)	intron (NM_007218, intron 1 of 1)	9035	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
7155	chr1	32232001	32232400	+	0	NA	TTS (NM_003757)	TTS (NM_003757)	9510	NR_026850	339483		NM_178546	ENSG00000291132	MTMR9LP	MTMR9L	myotubularin related protein 9 like, pseudogene	pseudo
32990	chr10	110522371	110522830	+	0	NA	Intergenic	MIR3|SINE|MIR	24693	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
204852	chr7	5797721	5798230	+	0	NA	Intergenic	LTR52|LTR|ERVL	-16312	NM_207116	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
214418	chr7	149830451	149831050	+	0	NA	intron (NR_163594, intron 100 of 102)	intron (NR_163594, intron 100 of 102)	-7625	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
195377	chr6	36689351	36689650	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-8326	NM_001257357	401258		NM_207498	ENSG00000255587	RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
162856	chr3	49343071	49343430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3197	NM_001251877	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
48574	chr12	10290071	10290230	+	0	NA	intron (NM_001351060, intron 2 of 8)	intron (NM_001351060, intron 2 of 8)	-14296	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
202134	chr6	154951271	154952230	+	0	NA	Intergenic	Intergenic	-43565	NM_012454	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
130352	chr2	85011621	85012030	+	0	NA	intron (NM_020122, intron 1 of 6)	MER20|DNA|hAT-Charlie	40664	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
90589	chr17	1574201	1575480	+	0	NA	3' UTR (NM_001321365, exon 15 of 15)	3' UTR (NM_001321365, exon 15 of 15)	-12048	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
123206	chr19	52725701	52726100	+	0	NA	intron (NM_030972, intron 3 of 6)	CpG	3982	NM_030972	81856		NM_030972	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
214685	chr7	150972571	150972730	+	0	NA	intron (NM_172056, intron 2 of 8)	intron (NM_172056, intron 2 of 8)	5664	NM_172056	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
49357	chr12	22326921	22327180	+	0	NA	intron (NM_001304450, intron 1 of 3)	intron (NM_001304450, intron 1 of 3)	7664	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
32965	chr10	110480401	110480600	+	0	NA	Intergenic	Intergenic	-17407	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
6722	chr1	30085851	30086230	+	0	NA	Intergenic	Intergenic	-48428	NR_110790	101929406		NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
211005	chr7	102305251	102305950	+	0	NA	intron (NM_001359228, intron 2 of 8)	MER112|DNA|hAT-Charlie	12497	NR_036245	100422858		NR_036245	ENSG00000264675	MIR4285	-	microRNA 4285	ncRNA
58929	chr13	19759751	19760050	+	0	NA	intron (NM_001354909, intron 2 of 8)	intron (NM_001354909, intron 2 of 8)	23045	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
108819	chr18	78875571	78875730	+	0	NA	Intergenic	Intergenic	-104625	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
238817	chrX	154412501	154413630	+	0	NA	promoter-TSS (NM_001009934)	promoter-TSS (NM_001009934)	-964	NM_001009933	1774		NM_006730	ENSG00000013563	DNASE1L1	DNAS1L1|DNASEX|DNL1L|G4.8|XIB	deoxyribonuclease 1 like 1	protein-coding
62250	chr13	98548821	98549080	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-26825	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
88271	chr16	82996201	82996400	+	0	NA	intron (NM_001220490, intron 2 of 12)	intron (NM_001220490, intron 2 of 12)	-6002	NR_110937	101928417		NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
55880	chr12	109597401	109598050	+	0	NA	3' UTR (NM_000431, exon 11 of 11)	3' UTR (NM_000431, exon 11 of 11)	23931	NM_001114185	4598		NM_000431	ENSG00000110921	MVK	LRBP|MK|MVLK|POROK3	mevalonate kinase	protein-coding
61527	chr13	59979571	59979900	+	0	NA	intron (NM_001258370, intron 8 of 15)	intron (NM_001258370, intron 8 of 15)	-32983	NR_109838	100874195		NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
189166	chr5	171398451	171399850	+	0	NA	intron (NM_002520, intron 6 of 10)	L1MB8|LINE|L1	11301	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
96725	chr17	41660501	41660700	+	0	NA	Intergenic	MIR3|SINE|MIR	-20401	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
94448	chr17	29246701	29247300	+	0	NA	intron (NM_005208, intron 1 of 5)	intron (NM_005208, intron 1 of 5)	141	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
46666	chr11	128715901	128718030	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-20942	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
137034	chr2	190764251	190764350	+	0	NA	Intergenic	Intergenic	105142	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
178259	chr4	143555701	143556300	+	0	NA	3' UTR (NM_003601, exon 24 of 24)	3' UTR (NM_003601, exon 24 of 24)	-3472	NR_003675	441046		NM_001011539	ENSG00000251600	GUSBP5	GYPELOC441046	GUSB pseudogene 5	pseudo
156537	chr22	41427171	41427330	+	0	NA	Intergenic	L2a|LINE|L2	19551	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
101889	chr17	74353971	74354750	+	0	NA	exon (NM_153209, exon 18 of 20)	exon (NM_153209, exon 18 of 20)	7508	NM_001080466	388419		NM_001080466	ENSG00000204347	BTBD17	BTBD17A|LGALS3BPL|TANGO10A	BTB domain containing 17	protein-coding
231887	chr9	133028851	133029280	+	0	NA	intron (NR_135119, intron 1 of 1)	AluJo|SINE|Alu	1357	NR_135119	105376306		NR_135119	ENSG00000288989	LOC105376306	-	uncharacterized LOC105376306	ncRNA
77257	chr15	81314251	81314750	+	0	NA	TTS (NM_004513)	TTS (NM_004513)	9641	NR_135013	80765		NM_030574	ENSG00000172345	STARD5	-	StAR related lipid transfer domain containing 5	protein-coding
56942	chr12	120474071	120474230	+	0	NA	intron (NM_001037494, intron 1 of 2)	AluJb|SINE|Alu	4308	NM_001037494	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
181372	chr5	40615401	40615880	+	0	NA	Intergenic	Intergenic	-64275	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
67053	chr14	67693621	67693880	+	0	NA	intron (NM_016026, intron 1 of 6)	AluSq2|SINE|Alu	2014	NM_001252650	51109		NM_016026	ENSG00000072042	RDH11	ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1	retinol dehydrogenase 11	protein-coding
137301	chr2	195650001	195650800	+	0	NA	Intergenic	Intergenic	-6558	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
193060	chr6	28682351	28683250	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-28325	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
77319	chr15	82444901	82446330	+	0	NA	promoter-TSS (NR_120378)	promoter-TSS (NR_120378)	-746	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
75870	chr15	69714051	69715350	+	0	NA	Intergenic	Intergenic	-120534	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
35728	chr11	1999521	2000030	+	0	NA	intron (NR_131224, intron 1 of 4)	intron (NR_131224, intron 1 of 4)	1691	NR_131224	283120		NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2	H19 imprinted maternally expressed transcript	ncRNA
205822	chr7	24728521	24728830	+	0	NA	intron (NM_001127453, intron 3 of 9)	intron (NM_001127453, intron 3 of 9)	28789	NM_001127453	1687		NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
141672	chr2	241799451	241799550	+	0	NA	intron (NM_022134, intron 2 of 3)	intron (NM_022134, intron 2 of 3)	-9693	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
80439	chr16	2653021	2653450	+	0	NA	Intergenic	Intergenic	14253	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
112139	chr19	5611701	5612100	+	0	NA	intron (NM_014649, intron 6 of 20)	intron (NM_014649, intron 6 of 20)	10876	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
185533	chr5	131345421	131345680	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA5|LINE|L1	81497	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
51526	chr12	52278721	52279280	+	0	NA	intron (NM_001320198, intron 2 of 10)	intron (NM_001320198, intron 2 of 10)	4355	NM_001320198	3892		NM_002284	ENSG00000170442	KRT86	HB6|Hb1|K86|KRTHB1|KRTHB6|MNX	keratin 86	protein-coding
62451	chr13	99347121	99348300	+	0	NA	intron (NR_026644, intron 7 of 8)	intron (NR_026644, intron 7 of 8)	-3710	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
76998	chr15	78421801	78422000	+	0	NA	Intergenic	L2a|LINE|L2	-15531	NM_001354994	3658		NM_004136	ENSG00000136381	IREB2	ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA	iron responsive element binding protein 2	protein-coding
52122	chr12	54200271	54200430	+	0	NA	Intergenic	MIRb|SINE|MIR	-11356	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
9354	chr1	47108001	47108200	+	0	NA	intron (NM_178134, intron 9 of 11)	intron (NM_178134, intron 9 of 11)	-29325	NM_001308102	284541		NM_001010969	ENSG00000162365	CYP4A22	-	cytochrome P450 family 4 subfamily A member 22	protein-coding
132422	chr2	105824501	105825100	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-27047	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
169074	chr3	153506851	153507030	+	0	NA	intron (NR_146713, intron 5 of 6)	L1PA2|LINE|L1	22445	NR_160966	152118		NR_160966	ENSG00000237787	LINC02877	C3orf79	long intergenic non-protein coding RNA 2877	ncRNA
215946	chr8	8345571	8347100	+	0	NA	intron (NM_001369759, intron 3 of 5)	intron (NM_001369759, intron 3 of 5)	39909	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
176324	chr4	87896371	87896530	+	0	NA	Intergenic	Intergenic	61747	NM_001291183	56955		NM_020203	ENSG00000152595	MEPE	OF45	matrix extracellular phosphoglycoprotein	protein-coding
203182	chr6	167130971	167131330	+	0	NA	intron (NM_031409, intron 1 of 2)	intron (NM_031409, intron 1 of 2)	8397	NM_031409	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
88470	chr16	85048121	85048380	+	0	NA	intron (NM_001286566, intron 1 of 11)	intron (NM_001286566, intron 1 of 11)	-14962	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
217234	chr8	26578501	26580180	+	0	NA	intron (NM_001244604, intron 1 of 13)	intron (NM_001244604, intron 1 of 13)	935	NM_001244604	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
56812	chr12	120215901	120216150	+	0	NA	intron (NM_001080855, intron 6 of 11)	intron (NM_001080855, intron 6 of 11)	14734	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
127357	chr2	39141771	39142330	+	0	NA	Intergenic	Intergenic	-17182	NM_001382394	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
155116	chr22	37622951	37623980	+	0	NA	exon (NM_001363771, exon 8 of 17)	exon (NM_001363771, exon 8 of 17)	14425	NM_001172688	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
134860	chr2	148710571	148710930	+	0	NA	intron (NM_015630, intron 2 of 13)	L1PA5|LINE|L1	65999	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
148568	chr20	64288351	64288750	+	0	NA	Intergenic	Intergenic	-1835	NR_040415	107126285		NR_040415		SEPTIN14P20	C20orf69|LINC00266-1|NCRNA00266|NCRNA00266-1|RBRP|SEPT14P20|bA476I15.3	septin 14 pseudogene 20	pseudo
115196	chr19	14467571	14468530	+	0	NA	intron (NM_002741, intron 15 of 21)	intron (NM_002741, intron 15 of 21)	7304	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
199527	chr6	118735301	118735680	+	0	NA	Intergenic	Intergenic	-25415	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
49219	chr12	18868871	18869030	+	0	NA	Intergenic	Intergenic	130831	NM_033328	93661		NM_033328	ENSG00000177938	CAPZA3	CAPPA3|Gsg3|HEL-S-86	capping actin protein of muscle Z-line subunit alpha 3	protein-coding
215690	chr8	869301	869700	+	0	NA	intron (NR_073397, intron 2 of 3)	intron (NR_073397, intron 2 of 3)	13726	NR_160729	105377777		NR_160729		LOC105377777	-	uncharacterized LOC105377777	ncRNA
39287	chr11	58562321	58562780	+	0	NA	intron (NM_001307951, intron 2 of 7)	LTR33A_|LTR|ERVL	13306	NM_004811	9404		NM_004811	ENSG00000110031	LPXN	LDPL	leupaxin	protein-coding
211884	chr7	111094451	111094750	+	0	NA	intron (NM_018334, intron 1 of 1)	intron (NM_018334, intron 1 of 1)	3473	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
117037	chr19	18930671	18931530	+	0	NA	intron (NM_001145722, intron 9 of 9)	intron (NM_001145722, intron 9 of 9)	7949	NM_001145724	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
35183	chr11	787251	787350	+	0	NA	3' UTR (NM_016564, exon 2 of 2)	3' UTR (NM_016564, exon 2 of 2)	2790	NM_016564	51286		NM_016564	ENSG00000184524	CEND1	BM88	cell cycle exit and neuronal differentiation 1	protein-coding
11152	chr1	86866351	86866650	+	0	NA	intron (NM_203341, intron 3 of 3)	L1MB2|LINE|L1	47626	NM_004261	9403		NM_004261	ENSG00000183291	SELENOF	SEP15	selenoprotein F	protein-coding
131205	chr2	95044501	95044700	+	0	NA	intron (NM_022440, intron 1 of 1)	intron (NM_022440, intron 1 of 1)	18892	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
223164	chr8	143538621	143538880	+	0	NA	exon (NM_015117, exon 2 of 12)	exon (NM_015117, exon 2 of 12)	2697	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
92875	chr17	16419881	16420700	+	0	NA	intron (NM_016113, intron 3 of 14)	intron (NM_016113, intron 3 of 14)	4719	NM_016113	51393		NM_016113	ENSG00000187688	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel subfamily V member 2	protein-coding
188466	chr5	154649901	154650850	+	0	NA	Intergenic	Intergenic	-32604	NM_001367715	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
1690	chr1	4647201	4647300	+	0	NA	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	-7359	NM_001042478	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
34700	chr10	133424251	133424730	+	0	NA	5' UTR (NM_001012508, exon 1 of 2)	5' UTR (NM_001012508, exon 1 of 2)	127	NM_001012508	503542		NM_001012508	ENSG00000203772	SPRN	SHADOO|SHO|bA108K14.1	shadow of prion protein	protein-coding
220232	chr8	96337721	96338380	+	0	NA	Intergenic	Intergenic	48598	NR_125829	102724804		NR_125828		LOC102724804	-	uncharacterized LOC102724804	ncRNA
12556	chr1	108690221	108690550	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1925	NM_001349768	55119		NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
212408	chr7	128137121	128137380	+	0	NA	Intergenic	Intergenic	55389	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
189007	chr5	168529301	168530100	+	0	NA	exon (NM_001355274, exon 1 of 1)	exon (NM_001355274, exon 1 of 1)	395	NM_001355274	345630		NM_001355274	ENSG00000188573	FBLL1	-	fibrillarin like 1	protein-coding
200360	chr6	134165371	134165930	+	0	NA	Intergenic	L1ME3A|LINE|L1	9216	NM_005627	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
218814	chr8	59105771	59105930	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	13297	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
154272	chr22	31631701	31631900	+	0	NA	promoter-TSS (NM_014338)	promoter-TSS (NM_014338)	-976	NM_014338	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
217380	chr8	28091601	28091800	+	0	NA	intron (NM_001284222, intron 1 of 14)	Charlie4z|DNA|hAT-Charlie	-1367	NM_001284226	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
162952	chr3	49602101	49602300	+	0	NA	intron (NM_003458, intron 1 of 11)	intron (NM_003458, intron 1 of 11)	47723	NM_003458	8927		NM_003458	ENSG00000164061	BSN	ZNF231	bassoon presynaptic cytomatrix protein	protein-coding
199845	chr6	127760771	127761680	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L1M3|LINE|L1	93963	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
236590	chrX	73562651	73563950	+	0	NA	promoter-TSS (NR_029423)	promoter-TSS (NR_029423)	152	NM_001039840	53344		NM_001039840	ENSG00000204116	CHIC1	BRX	cysteine rich hydrophobic domain 1	protein-coding
121128	chr19	46018271	46018850	+	0	NA	promoter-TSS (NR_030412)	promoter-TSS (NR_030412)	-372	NR_030412	768217		NR_030412	ENSG00000211580	MIR769	MIRN769|hsa-mir-769|mir-769	microRNA 769	ncRNA
199370	chr6	116253381	116254950	+	0	NA	promoter-TSS (NM_001322940)	promoter-TSS (NM_001322940)	-6	NM_001374522	29940		NM_013352	ENSG00000111817	DSE	DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
115168	chr19	14425001	14425250	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-5742	NR_046366	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
148596	chr21	5115751	5117180	+	0	NA	non-coding (NR_135220, exon 6 of 6)	non-coding (NR_135220, exon 6 of 6)	11904	NM_001363761	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
204606	chr7	5355151	5355450	+	0	NA	intron (NM_001080495, intron 16 of 29)	intron (NM_001080495, intron 16 of 29)	68246	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
155634	chr22	38941421	38942400	+	0	NA	Intergenic	HAL1ME|LINE|L1	-15612	NM_001193289	100913187		NM_001193289		APOBEC3A_B	A3A|APOBEC3A	APOBEC3A and APOBEC3B deletion hybrid	protein-coding
5234	chr1	25000951	25001530	+	0	NA	Intergenic	Intergenic	-22263	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
177479	chr4	113852651	113852750	+	0	NA	Intergenic	L1PA3|LINE|L1	-90773	NM_172114	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
104100	chr17	80270871	80272030	+	0	NA	intron (NM_020954, intron 2 of 16)	intron (NM_020954, intron 2 of 16)	10598	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
83146	chr16	23255271	23255430	+	0	NA	Intergenic	AluSz|SINE|Alu	-46952	NM_000336	6338		NM_000336	ENSG00000168447	SCNN1B	BESC1|ENaCb|ENaCbeta|LIDLS1|PHA1B2|SCNEB|beta-ENaC|beta-NaCH	sodium channel epithelial 1 subunit beta	protein-coding
201086	chr6	142813421	142813680	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	131626	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
162602	chr3	48696521	48697350	+	0	NA	intron (NM_016291, intron 1 of 5)	intron (NM_016291, intron 1 of 5)	-11020	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
72284	chr15	30894551	30894650	+	0	NA	Intergenic	Intergenic	-9252	NM_001146095	22909		NM_014967	ENSG00000198690	FAN1	KIAA1018|KMIN|MTMR15|hFAN1	FANCD2 and FANCI associated nuclease 1	protein-coding
118830	chr19	38579301	38580050	+	0	NA	intron (NM_000540, intron 99 of 105)	AluJr|SINE|Alu	-16672	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
7004	chr1	31890671	31890850	+	0	NA	Intergenic	AluJb|SINE|Alu	47058	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
188498	chr5	154819501	154819700	+	0	NA	3' UTR (NM_032385, exon 9 of 9)	3' UTR (NM_032385, exon 9 of 9)	-9858	NR_039667	100616306		NR_039667	ENSG00000263361	MIR378H	-	microRNA 378h	ncRNA
96847	chr17	41980771	41980930	+	0	NA	intron (NM_003315, intron 12 of 13)	intron (NM_003315, intron 12 of 13)	13053	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
181695	chr5	50593601	50594480	+	0	NA	Intergenic	Intergenic	-71891	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
179677	chr4	190037671	190038430	+	0	NA	Intergenic	CpG	-10794	NM_001286820	448831		NM_001005217	ENSG00000205097	FRG2	FRG2A	FSHD region gene 2	protein-coding
208016	chr7	55567151	55567900	+	0	NA	intron (NM_001321244, intron 1 of 5)	intron (NM_001321244, intron 1 of 5)	4343	NM_001321250	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
204956	chr7	6353051	6353550	+	0	NA	Intergenic	AluJb|SINE|Alu	-4333	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
67761	chr14	73722421	73722780	+	0	NA	intron (NM_001043318, intron 10 of 11)	intron (NM_001043318, intron 10 of 11)	-8216	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
143918	chr20	32628001	32628400	+	0	NA	Intergenic	Intergenic	40721	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
163364	chr3	50472071	50472230	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	31484	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
10655	chr1	70367121	70367380	+	0	NA	intron (NR_168350, intron 4 of 4)	LTR10F|LTR|ERV1	12439	NR_168349	11147		NM_007071	ENSG00000197568	ANKRD13C-DT	HHLA3	ANKRD13C divergent transcript	ncRNA
14381	chr1	144154371	144154630	+	0	NA	Intergenic	LTR53B|LTR|ERVL	93705	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
93713	chr17	19505901	19506100	+	0	NA	Intergenic	Intergenic	-27854	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
81317	chr16	4703021	4703380	+	0	NA	intron (NM_133450, intron 8 of 17)	AluJr|SINE|Alu	9482	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
54640	chr12	92926771	92927740	+	0	NA	intron (NM_003566, intron 1 of 28)	MER20|DNA|hAT-Charlie	2040	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
155733	chr22	39142871	39143200	+	0	NA	intron (NM_001346743, intron 2 of 5)	AluSx1|SINE|Alu	9645	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
85450	chr16	50603601	50604000	+	0	NA	intron (NM_033119, intron 3 of 9)	intron (NM_033119, intron 3 of 9)	55404	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
79802	chr16	1398651	1399150	+	0	NA	exon (NM_001037125, exon 6 of 6)	exon (NM_001037125, exon 6 of 6)	15804	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
110135	chr19	1602601	1603000	+	0	NA	intron (NM_006830, intron 1 of 2)	intron (NM_006830, intron 1 of 2)	2662	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
238305	chrX	149496801	149497030	+	0	NA	intron (NM_001166550, intron 5 of 8)	MER68|LTR|ERVL	8391	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
223505	chr8	144095801	144096880	+	0	NA	exon (NM_001916, exon 4 of 7)	exon (NM_001916, exon 4 of 7)	1264	NM_001916	1537		NM_001916	ENSG00000179091	CYC1	MC3DN6|UQCR4	cytochrome c1	protein-coding
122153	chr19	48876261	48877100	+	0	NA	TTS (NM_014330)	TTS (NM_014330)	4288	NM_014330	23645		NM_014330	ENSG00000087074	PPP1R15A	GADD34	protein phosphatase 1 regulatory subunit 15A	protein-coding
19610	chr1	179881621	179883500	+	0	NA	exon (NM_001267578, exon 1 of 10)	exon (NM_001267578, exon 1 of 10)	275	NM_001267578	26092		NM_015602	ENSG00000143337	TOR1AIP1	LAP1|LAP1B|LAP1C|LGMD2Y	torsin 1A interacting protein 1	protein-coding
66738	chr14	64506341	64506930	+	0	NA	intron (NM_001123329, intron 1 of 1)	intron (NM_001123329, intron 1 of 1)	-1422	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
147291	chr20	57618911	57619900	+	0	NA	intron (NM_030776, intron 1 of 7)	intron (NM_030776, intron 1 of 7)	1021	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
16983	chr1	155970601	155971500	+	0	NA	intron (NM_001350112, intron 1 of 21)	intron (NM_001350112, intron 1 of 21)	7125	NM_001350111	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
117210	chr19	19402571	19402800	+	0	NA	intron (NM_001384535, intron 1 of 10)	AluSc|SINE|Alu	-2990	NM_001384527	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
157290	chr22	44314471	44314900	+	0	NA	Intergenic	Intergenic	-1734	NM_001099294	85352		NM_001099294	ENSG00000138944	SHISAL1	KIAA1644	shisa like 1	protein-coding
7494	chr1	33273051	33273980	+	0	NA	intron (NM_152493, intron 2 of 8)	intron (NM_152493, intron 2 of 8)	3822	NM_001370212	149076		NM_152493	ENSG00000160094	ZNF362	RN|lin-29	zinc finger protein 362	protein-coding
210707	chr7	100582301	100582550	+	0	NA	exon (NM_002319, exon 2 of 18)	exon (NM_002319, exon 2 of 18)	3704	NM_002319	4034		NM_002319	ENSG00000077454	LRCH4	LRN|LRRN1|LRRN4|PP14183	leucine rich repeats and calponin homology domain containing 4	protein-coding
169938	chr3	179027651	179027950	+	0	NA	exon (NM_022470, exon 4 of 6)	exon (NM_022470, exon 4 of 6)	41542	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
107494	chr18	47853251	47853350	+	0	NA	intron (NM_001135937, intron 5 of 9)	intron (NM_001135937, intron 5 of 9)	77359	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
3510	chr1	16050201	16050730	+	0	NA	intron (NM_000085, intron 10 of 19)	intron (NM_000085, intron 10 of 19)	1703	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
45235	chr11	117970571	117971430	+	0	NA	Intergenic	Intergenic	-15394	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
66569	chr14	63435371	63435750	+	0	NA	intron (NR_104104, intron 2 of 12)	intron (NR_104104, intron 2 of 12)	72678	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
78850	chr15	100307601	100307800	+	0	NA	intron (NM_139057, intron 3 of 21)	intron (NM_139057, intron 3 of 21)	34275	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
168228	chr3	141309301	141309700	+	0	NA	Intergenic	Intergenic	-14686	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
53079	chr12	57732821	57733380	+	0	NA	intron (NM_014770, intron 5 of 17)	intron (NM_014770, intron 5 of 17)	5146	NM_001122772	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
13464	chr1	114566221	114566480	+	0	NA	Intergenic	AluSp|SINE|Alu	15265	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
194550	chr6	33334421	33335080	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-5471	NM_001369203	113523636		NM_001369203	ENSG00000286920	SMIM40	-	small integral membrane protein 40	protein-coding
206403	chr7	31122601	31122830	+	0	NA	Intergenic	Intergenic	70254	NM_001199635	117		NM_001118	ENSG00000078549	ADCYAP1R1	PAC1|PAC1R|PACAPR|PACAPRI	ADCYAP receptor type I	protein-coding
20299	chr1	197180251	197180550	+	0	NA	intron (NR_135153, intron 6 of 11)	Tigger3b|DNA|TcMar-Tigger	20893	NR_135153	360023		NM_194314	ENSG00000177888	ZBTB41	FRBZ1|ZNF924	zinc finger and BTB domain containing 41	protein-coding
202898	chr6	160004051	160004730	+	0	NA	non-coding (NR_047514, exon 1 of 1)	non-coding (NR_047514, exon 1 of 1)	3274	NR_047511	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
212064	chr7	115002851	115003150	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	-75958	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
218200	chr8	42007671	42008800	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-43515	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
159109	chr3	12581171	12581580	+	0	NA	intron (NM_014160, intron 6 of 7)	intron (NM_014160, intron 6 of 7)	-20376	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
232106	chr9	133702201	133704100	+	0	NA	intron (NM_001134707, intron 12 of 20)	intron (NM_001134707, intron 12 of 20)	35202	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
129740	chr2	70962851	70962950	+	0	NA	exon (NM_001692, exon 9 of 14)	exon (NM_001692, exon 9 of 14)	-14289	NR_110273	101927750		NR_110273	ENSG00000239322	ATP6V1B1-AS1	-	ATP6V1B1 antisense RNA 1	ncRNA
132600	chr2	108452401	108453000	+	0	NA	intron (NR_028063, intron 3 of 21)	AluSc|SINE|Alu	3494	NR_028063								
115072	chr19	14202601	14202880	+	0	NA	intron (NM_001008701, intron 1 of 23)	intron (NM_001008701, intron 1 of 23)	3429	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
50911	chr12	49296451	49298650	+	0	NA	non-coding (NR_120449, exon 5 of 8)	non-coding (NR_120449, exon 5 of 8)	2403	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
69236	chr14	92800921	92801380	+	0	NA	intron (NM_005113, intron 2 of 12)	intron (NM_005113, intron 2 of 12)	6845	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
85818	chr16	56987051	56987630	+	0	NA	Intergenic	AluSx|SINE|Alu	-2217	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
126543	chr2	28584001	28584650	+	0	NA	intron (NM_153021, intron 25 of 57)	intron (NM_153021, intron 25 of 57)	17968	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
135498	chr2	161955351	161955650	+	0	NA	intron (NM_001178016, intron 19 of 26)	intron (NM_001178016, intron 19 of 26)	118715	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
231769	chr9	132242101	132243700	+	0	NA	3' UTR (NM_032536, exon 8 of 8)	3' UTR (NM_032536, exon 8 of 8)	80842	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
78418	chr15	92122251	92122350	+	0	NA	intron (NM_013272, intron 5 of 9)	L2b|LINE|L2	267996	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
101767	chr17	72986121	72986480	+	0	NA	intron (NM_001352691, intron 5 of 10)	intron (NM_001352691, intron 5 of 10)	106388	NM_001352691	201266		NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP-11|ZIP11	solute carrier family 39 member 11	protein-coding
223932	chr9	677551	677850	+	0	NA	intron (NM_001354333, intron 2 of 11)	intron (NM_001354333, intron 2 of 11)	-9067	NM_001354336	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
91031	chr17	2828071	2829000	+	0	NA	intron (NM_001100398, intron 2 of 23)	L2a|LINE|L2	32097	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
95039	chr17	32500921	32501180	+	0	NA	intron (NM_015194, intron 21 of 21)	L1MB5|LINE|L1	14057	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
186785	chr5	139357071	139357600	+	0	NA	intron (NM_001033112, intron 1 of 3)	L1M4|LINE|L1	14901	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
209388	chr7	76313951	76314700	+	0	NA	Intergenic	Intergenic	11652	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
103445	chr17	78271951	78273030	+	0	NA	intron (NR_073178, intron 1 of 6)	LTR6A|LTR|ERV1	6002	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
81119	chr16	4381251	4381600	+	0	NA	exon (NM_138440, exon 2 of 2)	exon (NM_138440, exon 2 of 2)	9577	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
85111	chr16	34085251	34085350	+	0	NA	Intergenic	Intergenic	-78278	NR_162093	113218496		NR_162093		MIR9901	-	microRNA 9901	ncRNA
132950	chr2	111460851	111461230	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	34121	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
137315	chr2	195686571	195686830	+	0	NA	intron (NM_001127257, intron 3 of 9)	MIR|SINE|MIR	29474	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
38228	chr11	36430871	36431230	+	0	NA	intron (NM_001160167, intron 4 of 8)	intron (NM_001160167, intron 4 of 8)	30053	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
23704	chr1	231627301	231627830	+	0	NA	intron (NM_001164556, intron 1 of 4)	intron (NM_001164556, intron 1 of 4)	750	NM_001164555	27185		NM_018662	ENSG00000162946	DISC1	C1orf136|SCZD9	DISC1 scaffold protein	protein-coding
27506	chr10	32289421	32289950	+	0	NA	intron (NR_168511, intron 6 of 13)	AluY|SINE|Alu	57473	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
55406	chr12	104473321	104474480	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	16952	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
58423	chr12	131922971	131923680	+	0	NA	TTS (NM_003565)	TTS (NM_003565)	-5951	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
215979	chr8	8846271	8846900	+	0	NA	intron (NM_004225, intron 1 of 2)	L2a|LINE|L2	47045	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
130184	chr2	83347721	83347980	+	0	NA	Intergenic	L1PA3|LINE|L1	-174964	NR_146482	101928031		NR_146482	ENSG00000232548	LINC01809	-	long intergenic non-protein coding RNA 1809	ncRNA
114563	chr19	12895401	12895600	+	0	NA	intron (NM_000159, intron 6 of 11)	AluSz|SINE|Alu	4340	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
19041	chr1	169694311	169695530	+	0	NA	intron (NM_000655, intron 8 of 8)	L2|LINE|L2	13937	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
26920	chr10	26470601	26471500	+	0	NA	intron (NM_019043, intron 2 of 14)	MIR|SINE|MIR	32709	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
88063	chr16	81463671	81464430	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	18880	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
58375	chr12	131800571	131800730	+	0	NA	TTS (NM_004592)	TTS (NM_004592)	-27743	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
108580	chr18	75161571	75162150	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	43653	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
218081	chr8	38934451	38935150	+	0	NA	intron (NM_021623, intron 2 of 11)	MIRc|SINE|MIR	33454	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
70192	chr14	100486321	100486700	+	0	NA	intron (NM_024515, intron 4 of 6)	intron (NM_024515, intron 4 of 6)	61617	NM_001385103	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
54011	chr12	75480051	75481340	+	0	NA	promoter-TSS (NM_006851)	promoter-TSS (NM_006851)	-60	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
107006	chr18	32060101	32060500	+	0	NA	intron (NM_017831, intron 4 of 5)	intron (NM_017831, intron 4 of 5)	-31574	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
183675	chr5	80650421	80651080	+	0	NA	5' UTR (NM_001190470, exon 1 of 1)	5' UTR (NM_001190470, exon 1 of 1)	258	NM_001190470	100462981		NM_001190470		MTRNR2L2	HN2	MT-RNR2 like 2 (pseudogene)	pseudo
73550	chr15	44219421	44219970	+	0	NA	Intergenic	Intergenic	-24424	NR_104455	84978		NM_032892	ENSG00000171877	FRMD5	NEDEMA	FERM domain containing 5	protein-coding
233748	chrX	1387301	1387500	+	0	NA	exon (NM_001636, exon 3 of 4)	exon (NM_001636, exon 3 of 4)	4713	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
112267	chr19	5800501	5800980	+	0	NA	Intergenic	Intergenic	-4327	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
200113	chr6	130202851	130203680	+	0	NA	intron (NM_001258275, intron 7 of 13)	intron (NM_001258275, intron 7 of 13)	12620	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
113359	chr19	8697971	8698530	+	0	NA	exon (NM_178525, exon 1 of 1)	exon (NM_178525, exon 1 of 1)	545	NM_178525	284382		NM_178525	ENSG00000181786	ACTL9	HSD21|SPGF53	actin like 9	protein-coding
46681	chr11	128738671	128739630	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-43127	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
18907	chr1	168362601	168363780	+	0	NA	Intergenic	Intergenic	-12334	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
108669	chr18	76824951	76825750	+	0	NA	intron (NM_007345, intron 1 of 30)	Charlie1a|DNA|hAT-Charlie	1590	NM_007345	7776		NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
97502	chr17	43905651	43906000	+	0	NA	intron (NM_001278370, intron 1 of 12)	intron (NM_001278370, intron 1 of 12)	1711	NM_001278374	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
123039	chr19	51182971	51183330	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-1184	NR_110732	101928517		NR_110732	ENSG00000269072	LOC101928517	-	uncharacterized LOC101928517	ncRNA
10214	chr1	62434301	62434980	+	0	NA	Intergenic	Intergenic	-1664	NM_001017415	7398		NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
238667	chrX	154027721	154027980	+	0	NA	3' UTR (NM_001316337, exon 5 of 5)	3' UTR (NM_001316337, exon 5 of 5)	-7861	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
205795	chr7	23863201	23863530	+	0	NA	Intergenic	Intergenic	153146	NM_031414	56164		NM_031414	ENSG00000196335	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
101510	chr17	67724721	67726180	+	0	NA	intron (NM_001303272, intron 5 of 16)	intron (NM_001303272, intron 5 of 16)	7514	NM_015462	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
211011	chr7	102351951	102352050	+	0	NA	intron (NM_001146210, intron 4 of 7)	intron (NM_001146210, intron 4 of 7)	4444	NM_001146210	729597		NM_001146210	ENSG00000260097	SPDYE6	-	speedy/RINGO cell cycle regulator family member E6	protein-coding
35830	chr11	2272271	2272630	+	0	NA	Intergenic	Intergenic	-1862	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
5196	chr1	24957101	24958130	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	7395	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
173005	chr4	4343121	4343380	+	0	NA	Intergenic	(TCAT)n|Simple_repeat|Simple_repeat	-43282	NM_001287763	27065		NM_014392	ENSG00000168824	NSG1	D4S234|D4S234E|NEEP21|P21	neuronal vesicle trafficking associated 1	protein-coding
216893	chr8	22680251	22680750	+	0	NA	Intergenic	Intergenic	-11352	NR_156436	55909		NM_018688	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
71695	chr15	20227001	20227820	+	0	NA	Intergenic	Intergenic	-55334	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
99015	chr17	48829801	48830100	+	0	NA	Intergenic	AluJb|SINE|Alu	-1085	NM_001261390	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
117804	chr19	29899451	29899780	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-24042	NM_001252641	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
17995	chr1	160521771	160521930	+	0	NA	intron (NM_001184714, intron 1 of 7)	L2a|LINE|L2	1405	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
127851	chr2	45637421	45637680	+	0	NA	Intergenic	Intergenic	-14125	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
214637	chr7	150744121	150744730	+	0	NA	TTS (NM_001199577)	TTS (NM_001199577)	7077	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
45313	chr11	118157551	118157850	+	0	NA	Intergenic	Intergenic	-4877	NM_174934	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
179858	chr5	530071	530630	+	0	NA	Intergenic	L1M5|LINE|L1	5532	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
162420	chr3	48307151	48307260	+	0	NA	intron (NM_001080525, intron 4 of 4)	intron (NM_001080525, intron 4 of 4)	-5520	NM_001308435	10201		NM_005793	ENSG00000172113	NME6	IPIA-ALPHA|NDK 6|NM23-H6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding
201534	chr6	149149521	149149780	+	0	NA	Intergenic	AluJr|SINE|Alu	-68274	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
237285	chrX	112678701	112680320	+	0	NA	intron (NM_178175, intron 1 of 3)	intron (NM_178175, intron 1 of 3)	428	NM_178175	340596		NM_178175	ENSG00000182508	LHFPL1	-	LHFPL tetraspan subfamily member 1	protein-coding
9884	chr1	54352471	54353030	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	53644	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
82207	chr16	14988271	14989100	+	0	NA	intron (NM_001285448, intron 2 of 21)	intron (NM_001285448, intron 2 of 21)	13659	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
146809	chr20	51129121	51129380	+	0	NA	Intergenic	Intergenic	-106143	NM_002237	3755		NM_002237	ENSG00000026559	KCNG1	K13|KCNG|KV6.1|kH2	potassium voltage-gated channel modifier subfamily G member 1	protein-coding
138533	chr2	207506751	207507330	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-22922	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
71660	chr14	106872601	106873530	+	0	NA	Intergenic	Intergenic	-22066	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
123333	chr19	53592771	53593430	+	0	NA	Intergenic	L1PA15-16|LINE|L1	10397	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
94950	chr17	32083671	32085630	+	0	NA	Intergenic	Intergenic	44314	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
66820	chr14	64754721	64754980	+	0	NA	intron (NM_001355436, intron 32 of 35)	LTR78B|LTR|ERV1	30836	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
88609	chr16	85605321	85606250	+	0	NA	Intergenic	Intergenic	-5624	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
17960	chr1	160431001	160431330	+	0	NA	Intergenic	Intergenic	30601	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
109218	chr19	479951	480800	+	0	NA	intron (NM_001385599, intron 2 of 4)	intron (NM_001385599, intron 2 of 4)	-5392	NM_182577	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
113053	chr19	8072751	8073330	+	0	NA	intron (NM_032447, intron 62 of 63)	intron (NM_032447, intron 62 of 63)	20278	NM_005624	6370		NM_005624	ENSG00000131142	CCL25	Ck beta-15|Ckb15|SCYA25|TECK|TECKvar	C-C motif chemokine ligand 25	protein-coding
55355	chr12	104139501	104139700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1390	NM_006166	4801		NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	nuclear transcription factor Y subunit beta	protein-coding
111300	chr19	3593201	3593400	+	0	NA	3' UTR (NM_133261, exon 6 of 6)	3' UTR (NM_133261, exon 6 of 6)	7822	NM_133261	126326		NM_133261	ENSG00000179855	GIPC3	C19orf64|DFNB15|DFNB72|DFNB95	GIPC PDZ domain containing family member 3	protein-coding
30859	chr10	86643121	86643380	+	0	NA	Intergenic	AluSz6|SINE|Alu	-11297	NM_033282	94233		NM_033282	ENSG00000122375	OPN4	MOP	opsin 4	protein-coding
189834	chr5	177091221	177091480	+	0	NA	intron (NM_022963, intron 4 of 15)	MIRc|SINE|MIR	1800	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
156585	chr22	41527971	41528800	+	0	NA	3' UTR (NM_001018050, exon 6 of 6)	3' UTR (NM_001018050, exon 6 of 6)	16085	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
126270	chr2	27169621	27170600	+	0	NA	Intergenic	Intergenic	21106	NM_175769	150921		NM_175769	ENSG00000163792	TCF23	OUT|TCF-23|bHLHa24	transcription factor 23	protein-coding
196177	chr6	42582051	42582680	+	0	NA	intron (NM_001363705, intron 2 of 46)	intron (NM_001363705, intron 2 of 46)	18336	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
76064	chr15	72359771	72359930	+	0	NA	intron (NM_001318825, intron 1 of 13)	intron (NM_001318825, intron 1 of 13)	16164	NR_134869	3073		NM_000520	ENSG00000213614	HEXA	TSD	hexosaminidase subunit alpha	protein-coding
127965	chr2	46656701	46657200	+	0	NA	Intergenic	Intergenic	39735	NM_014171	9419		NM_014171	ENSG00000119878	CRIPT	HSPC139|RTS3|SSMDF	CXXC repeat containing interactor of PDZ3 domain	protein-coding
62110	chr13	95296571	95296830	+	0	NA	intron (NM_001301830, intron 1 of 19)	intron (NM_001301830, intron 1 of 19)	4751	NM_001105515	10257		NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4 (PEL blood group)	protein-coding
120802	chr19	45462401	45463780	+	0	NA	Intergenic	AluJb|SINE|Alu	-4906	NM_001114171	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
174154	chr4	36251701	36252230	+	0	NA	intron (NR_122079, intron 3 of 4)	L1PA16|LINE|L1	-4553	NR_122080	439933		NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
231835	chr9	132589451	132590130	+	0	NA	3' UTR (NM_020064, exon 3 of 3)	3' UTR (NM_020064, exon 3 of 3)	7184	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
193119	chr6	28955021	28955450	+	0	NA	Intergenic	Intergenic	11451	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
202866	chr6	159844301	159844900	+	0	NA	Intergenic	Intergenic	44324	NM_001271862	154197		NM_173516	ENSG00000146453	PNLDC1	HsPNLDC1|SPGF57|Trimmer	PARN like ribonuclease domain containing exonuclease 1	protein-coding
182290	chr5	57451651	57451750	+	0	NA	Intergenic	Intergenic	31111	NM_001017992	345651		NM_001017992	ENSG00000169067	ACTBL2	ACT	actin beta like 2	protein-coding
170762	chr3	188442401	188442880	+	0	NA	intron (NR_164692, intron 3 of 9)	intron (NR_164692, intron 3 of 9)	126026	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
48735	chr12	10714071	10714630	+	0	NA	intron (NM_003651, intron 4 of 9)	Charlie21a|DNA|hAT-Charlie	8973	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
200736	chr6	137736001	137736800	+	0	NA	intron (NR_121618, intron 1 of 2)	intron (NR_121618, intron 1 of 2)	2637	NR_121618	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
18336	chr1	161197701	161198050	+	0	NA	intron (NM_001377300, intron 1 of 13)	intron (NM_001377300, intron 1 of 13)	458	NM_001377300	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
143692	chr20	32122821	32123100	+	0	NA	intron (NM_001363731, intron 1 of 17)	SVA_D|Retroposon|SVA	13232	NM_001363731	9777		NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
184138	chr5	94793121	94794180	+	0	NA	intron (NM_001297777, intron 15 of 19)	intron (NM_001297777, intron 15 of 19)	174981	NM_032290	84250		NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding
90050	chr16	89924251	89924950	+	0	NA	intron (NM_006086, intron 1 of 3)	intron (NM_006086, intron 1 of 3)	1258	NM_006086	10381		NM_006086	ENSG00000258947	TUBB3	CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4	tubulin beta 3 class III	protein-coding
42900	chr11	73378301	73378900	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	1932	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
135466	chr2	161281701	161281900	+	0	NA	Intergenic	Intergenic	-26625	NM_005805	10213		NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	proteasome 26S subunit, non-ATPase 14	protein-coding
177446	chr4	113278371	113278550	+	0	NA	exon (NM_001354254, exon 18 of 47)	exon (NM_001354254, exon 18 of 47)	-14379	NM_001354278	287		NM_001148	ENSG00000145362	ANK2	ANK-2|CFAP87|FAP87|LQT4|brank-2	ankyrin 2	protein-coding
57787	chr12	123070571	123071030	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-10584	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
172832	chr4	3191921	3192950	+	0	NA	intron (NM_002111, intron 40 of 66)	intron (NM_002111, intron 40 of 66)	-51934	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
77117	chr15	78941701	78941900	+	0	NA	intron (NM_001319137, intron 1 of 12)	AluY|SINE|Alu	3246	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
140218	chr2	231718851	231719300	+	0	NA	Intergenic	Intergenic	5761	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
21077	chr1	203311101	203311400	+	0	NA	Intergenic	Intergenic	5731	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
10722	chr1	75793021	75793280	+	0	NA	intron (NM_004582, intron 7 of 8)	intron (NM_004582, intron 7 of 8)	3673	NR_002748	26804		NR_002748	ENSG00000201487	SNORD45B	RNU45B|U45b	small nucleolar RNA, C/D box 45B	snoRNA
164862	chr3	71066321	71067300	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-1886	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
121804	chr19	47918021	47918800	+	0	NA	promoter-TSS (NR_004435)	promoter-TSS (NR_004435)	-19	NR_004435	100126798		NR_004435		SNAR-A1	SNAR-A53113498	small NF90 (ILF3) associated RNA A1	snRNA
140120	chr2	231525001	231525200	+	0	NA	exon (NM_006056, exon 3 of 3)	exon (NM_006056, exon 3 of 3)	5345	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
111851	chr19	4583821	4584950	+	0	NA	Intergenic	CpG	-24701	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
215997	chr8	8890221	8891180	+	0	NA	exon (NM_004225, exon 1 of 3)	exon (NM_004225, exon 1 of 3)	2930	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
30696	chr10	80530271	80531430	+	0	NA	intron (NR_120661, intron 1 of 1)	intron (NR_120661, intron 1 of 1)	5092	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
122615	chr19	49804271	49804430	+	0	NA	intron (NM_014203, intron 19 of 23)	AluY|SINE|Alu	8942	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
67485	chr14	70917621	70918100	+	0	NA	intron (NM_014982, intron 1 of 35)	Tigger1|DNA|TcMar-Tigger	10401	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
168363	chr3	141894901	141895580	+	0	NA	intron (NM_001679, intron 1 of 6)	AluSx1|SINE|Alu	18597	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
85952	chr16	57258901	57259300	+	0	NA	intron (NM_015993, intron 2 of 3)	intron (NM_015993, intron 2 of 3)	13841	NM_012106	23568		NM_012106	ENSG00000102931	ARL2BP	BART|BART1|RP66	ADP ribosylation factor like GTPase 2 binding protein	protein-coding
53590	chr12	67989221	67989900	+	0	NA	non-coding (NR_104125, exon 1 of 4)	non-coding (NR_104125, exon 1 of 4)	115	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
171764	chr3	198221101	198221300	+	0	NA	non-coding (NR_146164, exon 18 of 18)	non-coding (NR_146164, exon 18 of 18)	67994	NR_146164	728262		NM_001145248	ENSG00000290937	FAM157A	GTF2IP18	family with sequence similarity 157 member A	ncRNA
189050	chr5	169935421	169935880	+	0	NA	intron (NM_001346304, intron 1 of 3)	intron (NM_001346304, intron 1 of 3)	44845	NM_001346304	100131897		NM_001129891	ENSG00000204767	INSYN2B	C5orf57|FAM196B	inhibitory synaptic factor family member 2B	protein-coding
50152	chr12	45763371	45763530	+	0	NA	intron (NM_152641, intron 3 of 20)	AluSx3|SINE|Alu	33741	NM_001347839	196528		NM_152641	ENSG00000189079	ARID2	BAF200|CSS6|SMARCF3|ZIPZAP|p200	AT-rich interaction domain 2	protein-coding
74904	chr15	63609121	63609550	+	0	NA	intron (NM_003922, intron 77 of 77)	intron (NM_003922, intron 77 of 77)	-8508	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
122488	chr19	49563821	49564080	+	0	NA	intron (NM_001270960, intron 1 of 8)	Charlie1b|DNA|hAT-Charlie	16606	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
133086	chr2	112481801	112483600	+	0	NA	intron (NM_001371712, intron 1 of 6)	CpG	544	NM_153712	150465		NM_153712	ENSG00000114999	TTL	-	tubulin tyrosine ligase	protein-coding
35144	chr11	724371	724980	+	0	NA	intron (NM_022772, intron 15 of 20)	intron (NM_022772, intron 15 of 20)	-17592	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
12272	chr1	100475621	100476080	+	0	NA	intron (NM_001319210, intron 10 of 16)	L1MDa|LINE|L1	-62289	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
36317	chr11	3862471	3863080	+	0	NA	intron (NM_001382571, intron 1 of 9)	Tigger7|DNA|TcMar-Tigger	6713	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
66075	chr14	58749201	58749400	+	0	NA	Intergenic	Intergenic	-78988	NR_110547	102723742		NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
127300	chr2	38753751	38754200	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-2481	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
46389	chr11	126302951	126303050	+	0	NA	Intergenic	AluSc|SINE|Alu	-1060	NM_014026	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
79961	chr16	1775501	1775700	+	0	NA	exon (NM_001257370, exon 6 of 8)	exon (NM_001257370, exon 6 of 8)	2372	NM_001257370	197342		NM_001010865	ENSG00000197774	EME2	SLX2B|gs125	essential meiotic structure-specific endonuclease subunit 2	protein-coding
156359	chr22	40955571	40955930	+	0	NA	intron (NM_014248, intron 2 of 4)	intron (NM_014248, intron 2 of 4)	4372	NM_014248	9978		NM_014248	ENSG00000100387	RBX1	BA554C12.1|RNF75|ROC1	ring-box 1	protein-coding
60421	chr13	40982651	40983350	+	0	NA	promoter-TSS (NM_001145353)	promoter-TSS (NM_001145353)	-101	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
44466	chr11	104968251	104969630	+	0	NA	promoter-TSS (NM_033306)	promoter-TSS (NM_033306)	-366	NM_033306	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
96648	chr17	40612301	40613650	+	0	NA	Intergenic	Intergenic	34843	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
53565	chr12	67632851	67632950	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-15845	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
135775	chr2	169693321	169693640	+	0	NA	promoter-TSS (NR_144936)	promoter-TSS (NR_144936)	925	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
150121	chr21	37483821	37484080	+	0	NA	intron (NM_101395, intron 6 of 12)	intron (NM_101395, intron 6 of 12)	63651	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
109120	chr18	80126701	80127250	+	0	NA	intron (NM_014913, intron 2 of 3)	Tigger7|DNA|TcMar-Tigger	17713	NM_014913	22850		NM_014913	ENSG00000101544	ADNP2	ZNF508	ADNP homeobox 2	protein-coding
171663	chr3	197677571	197678150	+	0	NA	intron (NM_014687, intron 16 of 19)	intron (NM_014687, intron 16 of 19)	-3284	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
132878	chr2	111162801	111163200	+	0	NA	intron (NM_001204108, intron 4 of 4)	intron (NM_001204108, intron 4 of 4)	42086	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
180823	chr5	32450951	32451250	+	0	NA	Intergenic	Intergenic	-6360	NR_144318	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
13297	chr1	113076151	113076250	+	0	NA	intron (NM_014813, intron 1 of 17)	AluSx|SINE|Alu	3002	NM_014813	9860		NM_014813	ENSG00000198799	LRIG2	LIG-2|LIG2|UFS2	leucine rich repeats and immunoglobulin like domains 2	protein-coding
209626	chr7	77724721	77724980	+	0	NA	intron (NM_198467, intron 1 of 7)	AluSq|SINE|Alu	-27505	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
48103	chr12	7642471	7642630	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	23358	NM_001644	339		NM_001644	ENSG00000111701	APOBEC1	APO1|APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme catalytic subunit 1	protein-coding
61710	chr13	74093951	74094050	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	39929	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
111965	chr19	4833101	4833780	+	0	NA	Intergenic	Intergenic	-1728	NM_001385678	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
52304	chr12	54743271	54743830	+	0	NA	Intergenic	L1PB1|LINE|L1	-95185	NM_001300854	117159		NM_053283	ENSG00000161634	DCD	AIDD|DCD-1|DSEP|HCAP|PIF	dermcidin	protein-coding
196924	chr6	52395971	52396350	+	0	NA	intron (NM_133367, intron 1 of 1)	L2c|LINE|L2	-24182	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
95487	chr17	36216071	36216500	+	0	NA	Intergenic	Intergenic	5222	NR_111970	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
45126	chr11	117183871	117184680	+	0	NA	intron (NM_001040455, intron 8 of 25)	intron (NM_001040455, intron 8 of 25)	5532	NM_001040455	51092		NM_015996	ENSG00000149577	SIDT2	CGI-40	SID1 transmembrane family member 2	protein-coding
125925	chr2	25046171	25046730	+	0	NA	intron (NM_001319099, intron 1 of 22)	intron (NM_001319099, intron 1 of 22)	3987	NM_001319099	22979		NM_014971	ENSG00000084710	EFR3B	KIAA0953	EFR3 homolog B	protein-coding
170566	chr3	186801671	186802080	+	0	NA	intron (NM_002916, intron 2 of 10)	AluSp|SINE|Alu	4607	NM_002916	5984		NM_002916	ENSG00000163918	RFC4	A1|RFC37	replication factor C subunit 4	protein-coding
10526	chr1	66942571	66942730	+	0	NA	intron (NM_001350530, intron 5 of 15)	intron (NM_001350530, intron 5 of 15)	12394	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
194886	chr6	34671621	34672350	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-24169	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
200532	chr6	136249801	136251400	+	0	NA	promoter-TSS (NM_001099286)	promoter-TSS (NM_001099286)	-289	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
172711	chr4	2796671	2797030	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	3765	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
70004	chr14	100067751	100069670	+	0	NA	intron (NM_016337, intron 1 of 13)	L2b|LINE|L2	3288	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
184249	chr5	96679451	96679550	+	0	NA	intron (NM_001375317, intron 2 of 30)	intron (NM_001375317, intron 2 of 30)	16475	NM_001330629	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
205478	chr7	17365801	17366100	+	0	NA	Intergenic	Intergenic	-8967	NR_110015	102659288		NR_110014		LINC02888	KCCAT333	long intergenic non-protein coding RNA 2888	ncRNA
115147	chr19	14397251	14397650	+	0	NA	intron (NM_078481, intron 6 of 19)	MamRep38|DNA|hAT	16006	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
137426	chr2	196592401	196592600	+	0	NA	5' UTR (NM_020760, exon 1 of 29)	5' UTR (NM_020760, exon 1 of 29)	483	NM_020760	57520		NM_020760	ENSG00000138411	HECW2	NDHSAL|NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
148825	chr21	8383801	8384930	+	0	NA	intron (NR_038958, intron 2 of 6).2	intron (NR_038958, intron 2 of 6).2	3700	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
68913	chr14	91360601	91361200	+	0	NA	intron (NM_001080414, intron 3 of 29)	AluJo|SINE|Alu	56920	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
113585	chr19	10275151	10275250	+	0	NA	intron (NM_000201, intron 2 of 6)	intron (NM_000201, intron 2 of 6)	4080	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
196199	chr6	42743821	42744480	+	0	NA	TTS (NM_003192)	TTS (NM_003192)	1953	NM_003192	6903		NM_003192	ENSG00000124659	TBCC	CFC	tubulin folding cofactor C	protein-coding
63088	chr13	113213001	113213400	+	0	NA	intron (NM_003589, intron 2 of 19)	AluJb|SINE|Alu	3587	NM_001008895	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
210750	chr7	100674901	100677230	+	0	NA	intron (NM_005273, intron 1 of 9)	CpG	2325	NM_005273	2783		NM_005273	ENSG00000172354	GNB2	HG2C1|SSS4|SSS4; NEDHYDF	G protein subunit beta 2	protein-coding
131182	chr2	94735671	94735850	+	0	NA	Intergenic	CpG	25424	NR_038409	90499		NR_038409	ENSG00000289811	FAM95A	-	family with sequence similarity 95 member A	ncRNA
92365	chr17	8201451	8201750	+	0	NA	Intergenic	Intergenic	8625	NR_132731	9212		NM_004217	ENSG00000178999	AURKB	AIK2|AIM-1|AIM1|ARK-2|ARK2|AurB|IPL1|PPP1R48|STK-1|STK12|STK5|aurkb-sv1|aurkb-sv2	aurora kinase B	protein-coding
170598	chr3	186934371	186934730	+	0	NA	intron (NM_173216, intron 1 of 7)	AluJb|SINE|Alu	4024	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
194507	chr6	33282671	33283050	+	0	NA	intron (NM_005452, intron 10 of 14).5	intron (NM_005452, intron 10 of 14).5	4429	NR_106933	102466754		NR_106933	ENSG00000284517	MIR6873	hsa-mir-6873	microRNA 6873	ncRNA
28813	chr10	62241621	62242080	+	0	NA	intron (NM_001282941, intron 3 of 4)	AluSc8|SINE|Alu	26994	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
146612	chr20	50151271	50151430	+	0	NA	intron (NR_027889, intron 1 of 6)	intron (NR_027889, intron 1 of 6)	2373	NM_001162505	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
82719	chr16	20903421	20903680	+	0	NA	intron (NR_161432, intron 2 of 3)	MER3|DNA|hAT-Charlie	2288	NR_161432	57149		NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
138112	chr2	202281451	202281750	+	0	NA	intron (NM_015934, intron 3 of 14)	AluJo|SINE|Alu	3487	NR_145774	109616995		NR_145774	ENSG00000212309	SNORD70B	-	small nucleolar RNA, C/D box 70B	snoRNA
27702	chr10	33145371	33145530	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-28643	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
16944	chr1	155920851	155920950	+	0	NA	promoter-TSS (NR_002974)	promoter-TSS (NR_002974)	-858	NR_002974	677823		NR_002974	ENSG00000207475	SNORA80E	ACA42|SNORA42	small nucleolar RNA, H/ACA box 80E	snoRNA
184027	chr5	91358801	91359200	+	0	NA	Intergenic	AluSz6|SINE|Alu	21097	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
92390	chr17	8288151	8289550	+	0	NA	TTS (NR_135484)	TTS (NR_135484)	180	NM_001330127	29098		NM_016492	ENSG00000108961	RANGRF	HSPC165|HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
196042	chr6	42046771	42047330	+	0	NA	intron (NM_001287434, intron 1 of 4)	MIR|SINE|MIR	1844	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
120787	chr19	45445371	45445730	+	0	NA	intron (NM_001369412, intron 1 of 9)	L2a|LINE|L2	5216	NM_001369417	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
87528	chr16	71899751	71901100	+	0	NA	intron (NM_001270979, intron 1 of 5)	intron (NM_001270979, intron 1 of 5)	4894	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
701	chr1	1405051	1405880	+	0	NA	intron (NM_001318485, intron 3 of 3)	7SLRNA|srpRNA|srpRNA	1828	NM_017971	55052		NM_017971	ENSG00000242485	MRPL20	L20mt|MRP-L20|bL20m	mitochondrial ribosomal protein L20	protein-coding
12625	chr1	109112001	109113300	+	0	NA	promoter-TSS (NM_001245025)	promoter-TSS (NM_001245025)	97	NR_158763	127003		NM_001122961	ENSG00000179902	CFAP276	C10orf194|C1orf194	cilia and flagella associated protein 276	protein-coding
148547	chr20	64216051	64216350	+	0	NA	intron (NM_004535, intron 10 of 22)	L3|LINE|CR1	-39495	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
192203	chr6	17708151	17708400	+	0	NA	TTS (NR_134616)	TTS (NR_134616)	1232	NR_134618	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
199435	chr6	117463571	117463730	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-18954	NM_173674	285761		NM_173674	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
183941	chr5	87424851	87425200	+	0	NA	Intergenic	Intergenic	-11992	NM_001363539	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
25068	chr10	3809351	3810800	+	0	NA	Intergenic	Intergenic	-23875	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
56241	chr12	111946401	111946600	+	0	NA	intron (NM_138341, intron 3 of 9)	MER9a3|LTR|ERVK	66665	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
75395	chr15	65757271	65757730	+	0	NA	intron (NM_001376920, intron 1 of 30)	L1MEd|LINE|L1	34793	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
120619	chr19	45041701	45041900	+	0	NA	intron (NM_001278439, intron 2 of 19)	L2b|LINE|L2	2755	NR_103529	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
213813	chr7	141053651	141054430	+	0	NA	Intergenic	Intergenic	-20024	NM_001195278	100507421		NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
32595	chr10	103542701	103543430	+	0	NA	intron (NM_004210, intron 1 of 5)	intron (NM_004210, intron 1 of 5)	-25623	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
41613	chr11	66414371	66414730	+	0	NA	Intergenic	Intergenic	-6454	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
77040	chr15	78763171	78763330	+	0	NA	intron (NM_014272, intron 22 of 23)	MIRb|SINE|MIR	11213	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
228163	chr9	97008721	97008980	+	0	NA	intron (NM_001355229, intron 1 of 4)	AluSq2|SINE|Alu	4755	NM_001355229	84278		NM_001355228	ENSG00000290770	MFSD14CP	HIATL2|MFSD14C	major facilitator superfamily domain containing 14C, pseudogene	pseudo
4818	chr1	23610401	23610600	+	0	NA	Intergenic	L2c|LINE|L2	-16834	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
168069	chr3	138050771	138051130	+	0	NA	Intergenic	(ATGGTG)n|Simple_repeat|Simple_repeat	40785	NM_016369	51208		NM_016369	ENSG00000066405	CLDN18	SFTA5|SFTPJ	claudin 18	protein-coding
167956	chr3	136577821	136578080	+	0	NA	intron (NM_005862, intron 4 of 33)	intron (NM_005862, intron 4 of 33)	174428	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
203205	chr6	167796251	167797280	+	0	NA	promoter-TSS (NR_026773)	promoter-TSS (NR_026773)	94	NR_026773	26238		NM_014356	ENSG00000146521	LINC01558	C6orf123|HGC6.2|LINC01557|dJ431P23.4	long intergenic non-protein coding RNA 1558	ncRNA
106821	chr18	23998621	23999080	+	0	NA	intron (NR_110796, intron 5 of 5)	intron (NR_110796, intron 5 of 5)	5963	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
88972	chr16	87864271	87864750	+	0	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	4997	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
62047	chr13	91323321	91323580	+	0	NA	Intergenic	Intergenic	-24370	NR_027349	407975		NM_213723	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA
118440	chr19	35852451	35853050	+	0	NA	promoter-TSS (NM_004646)	promoter-TSS (NM_004646)	-246	NM_004646	4868		NM_004646	ENSG00000161270	NPHS1	CNF|NPHN|nephrin	NPHS1 adhesion molecule, nephrin	protein-coding
72243	chr15	30470351	30471430	+	0	NA	promoter-TSS (NR_146103)	promoter-TSS (NR_146103)	-279	NR_146103	100288203		NR_146103		WHAMMP4	-	WHAMM pseudogene 4	pseudo
179970	chr5	849501	850300	+	0	NA	intron (NM_024786, intron 1 of 12)	intron (NM_024786, intron 1 of 12)	1086	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
227011	chr9	83709551	83709650	+	0	NA	intron (NR_135840, intron 1 of 1)	(GT)n|Simple_repeat|Simple_repeat	1269	NR_135840	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
75360	chr15	65583451	65584930	+	0	NA	intron (NM_001207059, intron 9 of 10)	L4_C_Mam|LINE|RTE-X	26941	NM_001207058	81556		NM_030800	ENSG00000138614	INTS14	C15orf44|VWA9	integrator complex subunit 14	protein-coding
93504	chr17	18992571	18993480	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	11739	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
97706	chr17	44328551	44328650	+	0	NA	Intergenic	Intergenic	-3730	NM_001321240	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
104157	chr17	80394171	80394330	+	0	NA	3' UTR (NM_001256071, exon 68 of 68)	3' UTR (NM_001256071, exon 68 of 68)	-20917	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
156053	chr22	39985151	39985880	+	0	NA	Intergenic	L2c|LINE|L2	-9439	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
32560	chr10	103366671	103366830	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1226	NM_139052	6877		NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
234159	chrX	11110971	11112300	+	0	NA	intron (NM_005333, intron 1 of 6)	CpG	303	NM_005333	3052		NM_005333	ENSG00000004961	HCCS	CCHL|LSDMCA1|MCOPS7|MLS	holocytochrome c synthase	protein-coding
88301	chr16	84116121	84118050	+	0	NA	promoter-TSS (NM_003791)	promoter-TSS (NM_003791)	-143	NM_003791	8720		NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SEDKF|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
9469	chr1	50724401	50725030	+	0	NA	intron (NM_007051, intron 6 of 18)	intron (NM_007051, intron 6 of 18)	235552	NM_007051	11124		NM_007051	ENSG00000185104	FAF1	CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1	Fas associated factor 1	protein-coding
27348	chr10	30691971	30692130	+	0	NA	promoter-TSS (NR_036438)	promoter-TSS (NR_036438)	-224	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
34885	chr11	372671	373100	+	0	NA	exon (NM_178537, exon 4 of 20)	exon (NM_178537, exon 4 of 20)	3386	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
167606	chr3	129572501	129572700	+	0	NA	intron (NM_015103, intron 15 of 35)	intron (NM_015103, intron 15 of 35)	24215	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
51655	chr12	53044651	53045580	+	0	NA	non-coding (NR_033854, exon 4 of 4)	non-coding (NR_033854, exon 4 of 4)	-1876	NM_198316	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
118054	chr19	34267171	34267930	+	0	NA	intron (NM_014686, intron 1 of 13)	intron (NM_014686, intron 1 of 13)	12996	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
154994	chr22	37310851	37311380	+	0	NA	intron (NM_001318024, intron 10 of 12)	intron (NM_001318024, intron 10 of 12)	28607	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
102002	chr17	74771671	74772200	+	0	NA	intron (NM_001305086, intron 5 of 5)	intron (NM_001305086, intron 5 of 5)	4410	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
128001	chr2	46985871	46986030	+	0	NA	intron (NM_020458, intron 5 of 19)	MER20|DNA|hAT-Charlie	-44095	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
114914	chr19	13950971	13951130	+	0	NA	intron (NM_001146254, intron 1 of 7)	AluSq2|SINE|Alu	-1424	NM_138353	90379		NM_138353	ENSG00000132017	DCAF15	C19orf72	DDB1 and CUL4 associated factor 15	protein-coding
220066	chr8	93915051	93915480	+	0	NA	TTS (NR_039602)	TTS (NR_039602)	854	NR_039602	100616169		NR_039602	ENSG00000284288	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
158462	chr22	50671601	50672000	+	0	NA	Intergenic	Intergenic	-1023	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
236329	chrX	69165201	69165720	+	0	NA	promoter-TSS (NM_022368)	promoter-TSS (NM_022368)	-7	NM_001382775	64219		NM_022368	ENSG00000181191	PJA1	PRAJA1|RNF70	praja ring finger ubiquitin ligase 1	protein-coding
106327	chr18	12946171	12946430	+	0	NA	Intergenic	L1MC1|LINE|L1	-1684	NM_031216	81929		NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
148792	chr21	8231811	8232740	+	0	NA	intron (NR_003287, intron 1 of 2)	AluSx1|SINE|Alu	-17230	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
23513	chr1	228826021	228826330	+	0	NA	Intergenic	L1MDa|LINE|L1	90696	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
184276	chr5	96752351	96752950	+	0	NA	intron (NM_001375317, intron 19 of 30)	intron (NM_001375317, intron 19 of 30)	9048	NR_104285	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
106243	chr18	11980401	11982400	+	0	NA	promoter-TSS (NM_014214)	promoter-TSS (NM_014214)	-107	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
117128	chr19	19262621	19262880	+	0	NA	promoter-TSS (NM_023002)	promoter-TSS (NM_023002)	54	NM_023002	404037		NM_023002	ENSG00000187664	HAPLN4	BRAL2	hyaluronan and proteoglycan link protein 4	protein-coding
168110	chr3	138608401	138609730	+	0	NA	promoter-TSS (NM_018147)	promoter-TSS (NM_018147)	16	NM_018147	55179		NM_018147	ENSG00000158234	FAIM	FAIM1	Fas apoptotic inhibitory molecule	protein-coding
133534	chr2	120233821	120234230	+	0	NA	Intergenic	AluY|SINE|Alu	-10625	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
230151	chr9	127751551	127752080	+	0	NA	intron (NM_170600, intron 3 of 11)	intron (NM_170600, intron 3 of 11)	3467	NM_001142534	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
128334	chr2	54708651	54710080	+	0	NA	Intergenic	MER52D|LTR|ERV1	-15647	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
39549	chr11	61116401	61117200	+	0	NA	intron (NM_001346456, intron 2 of 10)	(AC)n|Simple_repeat|Simple_repeat	14311	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
124611	chr2	1031971	1032700	+	0	NA	intron (NM_018968, intron 1 of 16)	intron (NM_018968, intron 1 of 16)	-80943	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
3831	chr1	16897541	16898330	+	0	NA	Intergenic	Intergenic	1955	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
84987	chr16	31460701	31461430	+	0	NA	intron (NM_024742, intron 1 of 3)	intron (NM_024742, intron 1 of 3)	1564	NM_001105247	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
25994	chr10	12041621	12043800	+	0	NA	promoter-TSS (NM_015542)	promoter-TSS (NM_015542)	99	NM_015542	26019		NM_015542	ENSG00000151461	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense mediated mRNA decay	protein-coding
185112	chr5	119276701	119277300	+	0	NA	intron (NM_001077654, intron 1 of 1)	MER44A|DNA|TcMar-Tigger	8241	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
37956	chr11	34586071	34586480	+	0	NA	Intergenic	Intergenic	-34818	NM_001378042	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
48078	chr12	7157871	7158230	+	0	NA	exon (NM_014718, exon 18 of 18)	exon (NM_014718, exon 18 of 18)	27679	NM_014718	9746		NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
42402	chr11	69013371	69014050	+	0	NA	promoter-TSS (NM_145015)	promoter-TSS (NM_145015)	-328	NM_001098515	116535		NM_145015	ENSG00000172935	MRGPRF	GPR140|GPR168|MRGF|RTA	MAS related GPR family member F	protein-coding
51214	chr12	50593521	50593880	+	0	NA	intron (NM_173602, intron 1 of 37)	(CTCTC)n|Simple_repeat|Simple_repeat	88715	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
161180	chr3	39129301	39129500	+	0	NA	intron (NR_159496, intron 14 of 28)	intron (NR_159496, intron 14 of 28)	-8806	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
146966	chr20	52438301	52438580	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-182398	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
24456	chr1	243844401	243844600	+	0	NA	promoter-TSS (NM_001206729)	promoter-TSS (NM_001206729)	-916	NM_001206729	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
238960	chrX	155094421	155094750	+	0	NA	intron (NM_001018055, intron 7 of 10)	L1MD2|LINE|L1	23077	NM_001018055	79184		NM_024332	ENSG00000185515	BRCC3	BRCC36|C6.1A|CXorf53	BRCA1/BRCA2-containing complex subunit 3	protein-coding
226638	chr9	74281771	74281930	+	0	NA	Intergenic	Intergenic	-89681	NR_121182	101927358		NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
77611	chr15	85358001	85358200	+	0	NA	Intergenic	Intergenic	-22496	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
94234	chr17	28663351	28663450	+	0	NA	intron (NM_003170, intron 1 of 36)	intron (NM_003170, intron 1 of 36)	1195	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
49707	chr12	31118221	31118700	+	0	NA	intron (NR_153414, intron 39 of 44)	L1MDa|LINE|L1	44600	NM_001257145	1663		NM_004399	ENSG00000013573	DDX11	CHL1|CHLR1|KRG2|WABS	DEAD/H-box helicase 11	protein-coding
237102	chrX	104135271	104135700	+	0	NA	intron (NM_001012755, intron 1 of 1)	L2c|LINE|L2	-10853	NR_039980	286437		NR_039980		LOC286437	-	uncharacterized LOC286437	ncRNA
60509	chr13	41343751	41344330	+	0	NA	intron (NM_024561, intron 9 of 19)	intron (NM_024561, intron 9 of 19)	-32002	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
174715	chr4	42645071	42645230	+	0	NA	intron (NM_001105529, intron 1 of 35)	intron (NM_001105529, intron 1 of 35)	11955	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
59976	chr13	32246451	32246700	+	0	NA	intron (NM_023037, intron 47 of 60)	L2c|LINE|L2	68788	NM_001136571	646799		NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1 like	protein-coding
202909	chr6	160056821	160057400	+	0	NA	intron (NM_000876, intron 20 of 47)	intron (NM_000876, intron 20 of 47)	-35972	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
56958	chr12	120526501	120527130	+	0	NA	intron (NM_032314, intron 1 of 6)	AluY|SINE|Alu	2343	NM_032314	84274		NM_032314	ENSG00000110871	COQ5	COQ10D9	coenzyme Q5, methyltransferase	protein-coding
132907	chr2	111411301	111411700	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	83661	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
198187	chr6	96626771	96627000	+	0	NA	Intergenic	Intergenic	63760	NM_001322467	9457		NM_020482	ENSG00000112214	FHL5	1700027G07Rik|ACT|FHL-5|dJ393D12.2	four and a half LIM domains 5	protein-coding
158575	chr3	4584451	4585430	+	0	NA	intron (NM_002222, intron 4 of 57)	intron (NM_002222, intron 4 of 57)	91592	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
128280	chr2	54591621	54592100	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	33466	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
11911	chr1	93352121	93352750	+	0	NA	intron (NM_001938, intron 1 of 2)	intron (NM_001938, intron 1 of 2)	6528	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
15919	chr1	151718151	151718930	+	0	NA	Intergenic	Intergenic	-1737	NM_007185	11189		NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP Elav-like family member 3	protein-coding
80087	chr16	2001901	2002780	+	0	NA	exon (NM_178167, exon 7 of 14)	exon (NM_178167, exon 7 of 14)	7481	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
218257	chr8	42171471	42173030	+	0	NA	Intergenic	AluY|SINE|Alu	19187	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
98804	chr17	48265361	48265980	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-28677	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
17462	chr1	156705661	156706930	+	0	NA	promoter-TSS (NM_001199723)	promoter-TSS (NM_001199723)	-479	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
160815	chr3	33026371	33026530	+	0	NA	intron (NM_000404, intron 10 of 15)	MER52D|LTR|ERV1	70382	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
44280	chr11	102299971	102300280	+	0	NA	Intergenic	L1PA6|LINE|L1	-17359	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
132657	chr2	108740671	108740830	+	0	NA	intron (NM_006267, intron 7 of 28)	intron (NM_006267, intron 7 of 28)	21268	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
94452	chr17	29251321	29251580	+	0	NA	intron (NM_005208, intron 3 of 5)	intron (NM_005208, intron 3 of 5)	4591	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
121210	chr19	46610751	46611730	+	0	NA	TTS (NM_001329922)	TTS (NM_001329922)	9168	NM_001329922	808		NM_005184	ENSG00000160014	CALM3	CALM|CAM1|CAM2|CAMB|CPVT6|CaM|CaMIII|HEL-S-72|LQT16|PHKD|PHKD3	calmodulin 3	protein-coding
202659	chr6	158778701	158778900	+	0	NA	intron (NM_003379, intron 6 of 12)	L1MC4a|LINE|L1	-14047	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
191117	chr6	4028251	4028350	+	0	NA	intron (NR_146785, intron 1 of 20)	AluJo|SINE|Alu	7000	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
67296	chr14	69484451	69484550	+	0	NA	promoter-TSS (NM_001161498)	promoter-TSS (NM_001161498)	-228	NM_001161498	400224		NM_001161498	ENSG00000175985	PLEKHD1	UPF0639	pleckstrin homology and coiled-coil domain containing D1	protein-coding
6317	chr1	27643671	27644730	+	0	NA	Intergenic	MIR3|SINE|MIR	-9015	NM_005248	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
103835	chr17	79481521	79481780	+	0	NA	intron (NM_001082575, intron 2 of 14)	intron (NM_001082575, intron 2 of 14)	34498	NM_001082575	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
66493	chr14	61670571	61671780	+	0	NA	Intergenic	Tigger14a|DNA|TcMar-Tigger	-24338	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
75025	chr15	64093121	64094530	+	0	NA	promoter-TSS (NM_032231)	promoter-TSS (NM_032231)	13	NM_032231	84191		NM_032231	ENSG00000166797	CIAO2A	CIA2A|FAM96A	cytosolic iron-sulfur assembly component 2A	protein-coding
1406	chr1	2556201	2558180	+	0	NA	promoter-TSS (NR_037844)	promoter-TSS (NR_037844)	-179	NR_037844	115110		NR_026927		TNFRSF14-AS1	-	TNFRSF14 antisense RNA 1	ncRNA
85617	chr16	53912121	53912900	+	0	NA	intron (NM_001363894, intron 8 of 9)	intron (NM_001363894, intron 8 of 9)	-126883	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
180241	chr5	1630621	1631080	+	0	NA	intron (NR_003713, intron 2 of 3)	L4_A_Mam|LINE|RTE-X	3155	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
238648	chrX	153983171	153983880	+	0	NA	TTS (NM_003492)	TTS (NM_003492)	-2349	NR_036175	100422877		NR_036175	ENSG00000283694	MIR3202-2	mir-3202-2	microRNA 3202-2	ncRNA
19457	chr1	174877421	174877680	+	0	NA	non-coding (NR_158982, exon 20 of 27)	non-coding (NR_158982, exon 20 of 27)	2032	NM_001035230	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
140773	chr2	235480621	235480880	+	0	NA	Intergenic	L1MB2|LINE|L1	-13293	NM_001037131	116987		NM_014914	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
165417	chr3	98023151	98023780	+	0	NA	intron (NR_047685, intron 3 of 9)	intron (NR_047685, intron 3 of 9)	11839	NM_001105580	200959		NM_001105580	ENSG00000183185	GABRR3	-	gamma-aminobutyric acid type A receptor subunit rho3	protein-coding
231445	chr9	131262801	131263300	+	0	NA	intron (NM_033387, intron 1 of 1)	AluSx1|SINE|Alu	13460	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
26422	chr10	17226501	17227700	+	0	NA	promoter-TSS (NR_108060)	promoter-TSS (NR_108060)	-202	NR_108060	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
210882	chr7	101162521	101163970	+	0	NA	exon (NM_003378, exon 2 of 2)	exon (NM_003378, exon 2 of 2)	2324	NM_003378	7425		NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
109674	chr19	1026151	1027100	+	0	NA	promoter-TSS (NM_001303499)	promoter-TSS (NM_001303499)	17	NM_001303501	1265		NM_004368	ENSG00000064666	CNN2	-	calponin 2	protein-coding
207862	chr7	50363671	50364180	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	44877	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
200905	chr6	139126261	139127100	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-8400	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
112248	chr19	5779271	5779830	+	0	NA	TTS (NM_152784)	TTS (NM_152784)	5196	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
233767	chrX	1413671	1414030	+	0	NA	TTS (NR_026710)	TTS (NR_026710)	13319	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
58890	chr13	19340621	19340700	+	0	NA	intron (NR_027248, intron 1 of 20)	L1MA3|LINE|L1	4313	NR_027248	100101938		NR_027248	ENSG00000237636	ANKRD26P3	LINC00414	ankyrin repeat domain 26 pseudogene 3	pseudo
103769	chr17	78988201	78988400	+	0	NA	Intergenic	MER41A|LTR|ERV1	-8377	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
9705	chr1	53100921	53101180	+	0	NA	intron (NM_001287595, intron 5 of 10)	intron (NM_001287595, intron 5 of 10)	38837	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
91945	chr17	7348951	7349460	+	0	NA	intron (NM_014716, intron 18 of 21)	intron (NM_014716, intron 18 of 21)	-2684	NM_001002914	147040		NM_001002914	ENSG00000213859	KCTD11	C17orf36|KCASH1|REN|REN/KCTD11	potassium channel tetramerization domain containing 11	protein-coding
177836	chr4	127632671	127633030	+	0	NA	promoter-TSS (NM_015693)	promoter-TSS (NM_015693)	-107	NM_015693	27152		NM_015693	ENSG00000164066	INTU	CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20	inturned planar cell polarity protein	protein-coding
237474	chrX	119784601	119785300	+	0	NA	Intergenic	Intergenic	2534	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
136344	chr2	175575571	175576330	+	0	NA	Intergenic	Intergenic	-394240	NM_001002258	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
162819	chr3	49157801	49159400	+	0	NA	Intergenic	Intergenic	-4199	NR_004405	22973		NR_004405		LAMB2P1	LAMB2L	laminin subunit beta 2 pseudogene 1	pseudo
69125	chr14	92532821	92533080	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	19169	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
221234	chr8	121741651	121741950	+	0	NA	Intergenic	Intergenic	-100360	NM_005328	3037		NM_005328	ENSG00000170961	HAS2	-	hyaluronan synthase 2	protein-coding
188775	chr5	157690451	157690750	+	0	NA	Intergenic	CpG	19067	NM_001145132	100190949		NM_001145132	ENSG00000187658	C5orf52	-	chromosome 5 open reading frame 52	protein-coding
172442	chr4	1910701	1910900	+	0	NA	intron (NM_007331, intron 5 of 10)	L1M5|LINE|L1	10174	NM_133334	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
200655	chr6	137045521	137045830	+	0	NA	promoter-TSS (NM_014432)	promoter-TSS (NM_014432)	-495	NM_014432	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
32829	chr10	110010081	110011150	+	0	NA	intron (NM_016824, intron 1 of 14)	MIR|SINE|MIR	-2234	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
51722	chr12	53213101	53214450	+	0	NA	intron (NM_001042728, intron 5 of 7)	intron (NM_001042728, intron 5 of 7)	-6524	NM_000889	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
129518	chr2	69651271	69651600	+	0	NA	intron (NM_001320698, intron 1 of 14)	intron (NM_001320698, intron 1 of 14)	7627	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
177511	chr4	118278111	118279630	+	0	NA	promoter-TSS (NR_002963)	promoter-TSS (NR_002963)	108	NR_034011	100093630		NR_003584	ENSG00000269893	SNHG8	LINC00060|NCRNA00060	small nucleolar RNA host gene 8	ncRNA
58865	chr12	133146651	133146950	+	0	NA	intron (NM_015394, intron 2 of 4)	AluSx1|SINE|Alu	16173	NM_015394	7556		NM_015394	ENSG00000256223	ZNF10	KOX1	zinc finger protein 10	protein-coding
220098	chr8	94422571	94422830	+	0	NA	intron (NM_012415, intron 3 of 14)	intron (NM_012415, intron 3 of 14)	14244	NM_001205263	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
171286	chr3	195903871	195904630	+	0	NA	intron (NM_005781, intron 1 of 14)	AluJr|SINE|Alu	-3826	NR_145450	100128262		NR_145450		TNK2-AS1	-	TNK2 antisense RNA 1	ncRNA
233510	chrM	11	1100	+	0	NA	Intergenic	Intergenic	6959	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
228310	chr9	98125501	98125900	+	0	NA	intron (NM_052820, intron 11 of 11)	intron (NM_052820, intron 11 of 11)	-6478	NM_033219	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
45058	chr11	117053601	117053950	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJo|SINE|Alu	44653	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
24305	chr1	236686171	236687000	+	0	NA	promoter-TSS (NM_001278343)	promoter-TSS (NM_001278343)	86	NM_001278343	88		NM_001103	ENSG00000077522	ACTN2	CMD1AA|CMH23|CMYP8|MPD6|MYOCOZ	actinin alpha 2	protein-coding
227884	chr9	93948971	93949130	+	0	NA	Intergenic	CpG	6305	NM_021570	56033		NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
1096	chr1	2025351	2026050	+	0	NA	exon (NM_000815, exon 4 of 9)	exon (NM_000815, exon 4 of 9)	6355	NM_000815	2563		NM_000815	ENSG00000187730	GABRD	EIG10|EJM7|GABAARdelta|GEFSP5	gamma-aminobutyric acid type A receptor subunit delta	protein-coding
195480	chr6	37100121	37100650	+	0	NA	Intergenic	AluSx|SINE|Alu	-69767	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
106570	chr18	21738621	21739030	+	0	NA	Intergenic	AluY|SINE|Alu	-1967	NM_020774	57534		NM_020774	ENSG00000101752	MIB1	DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6	MIB E3 ubiquitin protein ligase 1	protein-coding
108856	chr18	79327171	79328230	+	0	NA	intron (NM_198531, intron 15 of 29)	CpG	-68230	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
65894	chr14	55207801	55208000	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	-16315	NM_014750	9787		NM_014750	ENSG00000126787	DLGAP5	DLG7|HURP	DLG associated protein 5	protein-coding
216071	chr8	10603751	10603850	+	0	NA	Intergenic	Intergenic	51343	NM_178857	94137		NM_178857	ENSG00000183638	RP1L1	DCDC4B|OCMD|RP88	RP1 like 1	protein-coding
121037	chr19	45814271	45814850	+	0	NA	TTS (NM_004819)	TTS (NM_004819)	748	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
109773	chr19	1131501	1133100	+	0	NA	promoter-TSS (NM_001100122).2	promoter-TSS (NM_001100122).2	-79	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
154129	chr22	31164671	31165030	+	0	NA	intron (NR_024212, intron 1 of 5)	AluSx|SINE|Alu	4668	NM_152267	91445		NM_152267	ENSG00000138942	RNF185	-	ring finger protein 185	protein-coding
236023	chrX	55057771	55057930	+	0	NA	Intergenic	Intergenic	-17180	NM_001015038	389860		NM_001015038	ENSG00000238269	PAGE2B	CT16.5|GAGEE3|PAGE-2B	PAGE family member 2B	protein-coding
28449	chr10	49164601	49164800	+	0	NA	intron (NM_001288741, intron 3 of 4)	intron (NM_001288741, intron 3 of 4)	23691	NM_001353331	170371		NM_001010863	ENSG00000204161	TMEM273	C10orf128	transmembrane protein 273	protein-coding
111357	chr19	3673801	3674130	+	0	NA	intron (NM_001300849, intron 1 of 16)	intron (NM_001300849, intron 1 of 16)	26503	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
97223	chr17	42786651	42786950	+	0	NA	intron (NM_032387, intron 6 of 18)	MIR|SINE|MIR	6190	NM_032387	65266		NM_032387	ENSG00000126562	WNK4	PHA2B|PRKWNK4	WNK lysine deficient protein kinase 4	protein-coding
140674	chr2	234061921	234062180	+	0	NA	intron (NM_006944, intron 4 of 7)	intron (NM_006944, intron 4 of 7)	11348	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
101748	chr17	71921621	71922300	+	0	NA	Intergenic	L2b|LINE|L2	104019	NR_110876	102723505		NR_110876		ROCR	LINC02095	regulator of chondrogenesis RNA	ncRNA
177497	chr4	114295751	114295850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-302602	NM_001322112	7368		NM_003360	ENSG00000174607	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding
96426	chr17	40181321	40181730	+	0	NA	intron (NM_016339, intron 1 of 14)	intron (NM_016339, intron 1 of 14)	4055	NM_016339	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
46187	chr11	123381701	123382300	+	0	NA	promoter-TSS (NR_039714)	promoter-TSS (NR_039714)	-488	NR_039714	100616319		NR_039714	ENSG00000265357	MIR4493	-	microRNA 4493	ncRNA
214930	chr7	151550501	151551050	+	0	NA	Intergenic	MIRb|SINE|MIR	-30880	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
36119	chr11	3096801	3097730	+	0	NA	intron (NM_145638, intron 13 of 20)	L1MEd|LINE|L1	-39842	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
179699	chr4	190119251	190119700	+	0	NA	Intergenic	LTR60B|LTR|ERV1	54246	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
92020	chr17	7470101	7470450	+	0	NA	intron (NM_020899, intron 1 of 3)	AluJo|SINE|Alu	9356	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
221380	chr8	123392471	123392630	+	0	NA	intron (NM_014109, intron 1 of 27)	MIR|SINE|MIR	3897	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
178216	chr4	142574321	142574750	+	0	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	-13780	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
165591	chr3	101599771	101600130	+	0	NA	Intergenic	AluY|SINE|Alu	25770	NM_020357	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
12752	chr1	109623501	109624050	+	0	NA	promoter-TSS (NM_001257361)	promoter-TSS (NM_001257361)	-213	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
14689	chr1	145861621	145861880	+	0	NA	Intergenic	AluYc3|SINE|Alu	-2669	NM_006099	10401		NM_006099	ENSG00000131788	PIAS3	ZMIZ5	protein inhibitor of activated STAT 3	protein-coding
19935	chr1	184663921	184664280	+	0	NA	Intergenic	CpG	90758	NM_001319960	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
189444	chr5	172983121	172984100	+	0	NA	promoter-TSS (NM_003945)	promoter-TSS (NM_003945)	-161	NM_003945	8992		NM_003945	ENSG00000113732	ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase H+ transporting V0 subunit e1	protein-coding
146998	chr20	53562751	53562850	+	0	NA	non-coding (NR_110051, exon 3 of 6)	non-coding (NR_110051, exon 3 of 6)	10030	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
2374	chr1	9409501	9410050	+	0	NA	Intergenic	Intergenic	19141	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
187368	chr5	141842601	141842800	+	0	NA	Intergenic	Intergenic	23502	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
63144	chr13	113584351	113585700	+	0	NA	intron (NM_007111, intron 1 of 11)	CpG	272	NM_007111	7027		NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
113753	chr19	10504501	10504750	+	0	NA	Intergenic	AluY|SINE|Alu	-1269	NM_203500	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
18624	chr1	166080501	166081100	+	0	NA	intron (NR_163271, intron 1 of 2)	intron (NR_163271, intron 1 of 2)	73998	NR_030626	100126349		NR_030626	ENSG00000215952	MIR921	MIRN921|hsa-mir-921	microRNA 921	ncRNA
6903	chr1	31616221	31616780	+	0	NA	Intergenic	Intergenic	-1189	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
88679	chr16	85717501	85718130	+	0	NA	intron (NR_161452, intron 2 of 4)	MIRb|SINE|MIR	23885	NR_031731	100302261		NR_031731	ENSG00000283416	MIR1910	MIRN1910|hsa-mir-1910|mir-1910	microRNA 1910	ncRNA
34250	chr10	131081451	131081550	+	0	NA	Intergenic	Intergenic	-13718	NR_120623	101927489		NR_120623	ENSG00000230098	TCERG1L-AS1	-	TCERG1L antisense RNA 1	ncRNA
111185	chr19	3429051	3429850	+	0	NA	intron (NM_205843, intron 3 of 10)	AluJo|SINE|Alu	51075	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
114233	chr19	11485801	11486000	+	0	NA	intron (NM_138783, intron 6 of 8)	intron (NM_138783, intron 6 of 8)	-4854	NM_001420	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
60090	chr13	36343901	36344300	+	0	NA	intron (NM_001142296, intron 1 of 9)	intron (NM_001142296, intron 1 of 9)	2294	NM_001142296	23111		NM_015087	ENSG00000133104	SPART	SPG20|TAHCCP1	spartin	protein-coding
57397	chr12	121823851	121824500	+	0	NA	intron (NM_001353345, intron 12 of 16)	MIR|SINE|MIR	20166	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
58456	chr12	132087401	132087600	+	0	NA	intron (NR_003290, intron 2 of 9)	L1ME3G|LINE|L1	3217	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
39832	chr11	62122301	62122700	+	0	NA	Intergenic	Intergenic	-1511	NM_020238	3619		NM_020238	ENSG00000149503	INCENP	-	inner centromere protein	protein-coding
103228	chr17	77491521	77492700	+	0	NA	intron (NM_001293697, intron 6 of 9)	intron (NM_001293697, intron 6 of 9)	16475	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
82277	chr16	15223471	15223650	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-65039	NR_049832	100846994		NR_049832	ENSG00000264722	MIR3670-2	-	microRNA 3670-2	ncRNA
128382	chr2	55036321	55036580	+	0	NA	intron (NM_001321904, intron 2 of 9)	AluSz6|SINE|Alu	10876	NM_001321863	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133582	chr2	121646921	121647300	+	0	NA	intron (NM_001142274, intron 1 of 37)	AluSq2|SINE|Alu	2352	NM_001378005	23332		NM_015282	ENSG00000074054	CLASP1	MAST1	cytoplasmic linker associated protein 1	protein-coding
102381	chr17	75572401	75572800	+	0	NA	intron (NM_004524, intron 19 of 24)	AluYj4|SINE|Alu	-15458	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
7513	chr1	33470451	33470850	+	0	NA	Intergenic	Intergenic	-1995	NM_001377378	7579		NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
123865	chr19	55265101	55265500	+	0	NA	exon (NM_001297600, exon 6 of 7)	exon (NM_001297600, exon 6 of 7)	-6283	NM_014931	22870		NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding
80630	chr16	2985221	2986130	+	0	NA	Intergenic	Intergenic	-3379	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
193336	chr6	30204301	30204700	+	0	NA	intron (NM_001242783, intron 1 of 8).7	intron (NM_001242783, intron 1 of 8).7	8906	NM_003449	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
83561	chr16	28096701	28097850	+	0	NA	TTS (NM_015171)	TTS (NM_015171)	-33561	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
109891	chr19	1265611	1268080	+	0	NA	TTS (NR_027271)	TTS (NR_027271)	-2423	NM_001280	1153		NM_001280	ENSG00000099622	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
98364	chr17	46363351	46363450	+	0	NA	Intergenic	AluSz|SINE|Alu	-1603	NM_001330244	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
60065	chr13	33541901	33543700	+	0	NA	intron (NM_001243476, intron 3 of 17)	CpG	133994	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
121312	chr19	46748551	46749150	+	0	NA	intron (NM_001039885, intron 3 of 3)	AluSx|SINE|Alu	-2400	NM_013403	29888		NM_013403	ENSG00000090372	STRN4	PPP2R6C|ZIN|zinedin	striatin 4	protein-coding
173705	chr4	15733271	15733430	+	0	NA	TTS (NM_004334)	TTS (NM_004334)	30285	NM_004334	683		NM_004334	ENSG00000109743	BST1	CD157|cADPR2	bone marrow stromal cell antigen 1	protein-coding
112537	chr19	6524901	6525300	+	0	NA	Intergenic	AluSz|SINE|Alu	-5926	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
8969	chr1	44595051	44595450	+	0	NA	intron (NM_001319957, intron 1 of 13)	intron (NM_001319957, intron 1 of 13)	-36718	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
15957	chr1	151842051	151842350	+	0	NA	intron (NR_152846, intron 2 of 3)	intron (NR_152846, intron 2 of 3)	-1643	NM_001136003	100191040		NM_001136003	ENSG00000225556	C2CD4D	FAM148D	C2 calcium dependent domain containing 4D	protein-coding
118115	chr19	34662951	34663350	+	0	NA	intron (NR_027620, intron 1 of 3)	L1ME3B|LINE|L1	13881	NR_027620	643719		NR_027620		SCGB1B2P	SCGB4A1P	secretoglobin family 1B member 2, pseudogene	pseudo
158195	chr22	50241001	50241980	+	0	NA	intron (NM_020461, intron 1 of 24)	LTR13|LTR|ERVK	3533	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
30618	chr10	80209171	80209330	+	0	NA	intron (NR_038464, intron 1 of 1)	intron (NR_038464, intron 1 of 1)	1540	NR_038464	439990		NR_038464	ENSG00000237523	LINC00857	HUMT	long intergenic non-protein coding RNA 857	ncRNA
21007	chr1	202835201	202836200	+	0	NA	Intergenic	Intergenic	15443	NR_038135	641515		NR_038135	ENSG00000293466	MGAT4EP	-	MGAT4 family member E, pseudogene	pseudo
231363	chr9	130661721	130662280	+	0	NA	Intergenic	CpG	-2594	NM_021619	59335		NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding
150890	chr21	44139801	44140240	+	0	NA	intron (NM_198155, intron 4 of 5).2	intron (NM_198155, intron 4 of 5).2	6337	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
47986	chr12	6907071	6907780	+	0	NA	exon (NM_201650, exon 5 of 8)	exon (NM_201650, exon 5 of 8)	2603	NM_201650	10233		NM_006992	ENSG00000010626	LRRC23	LRPB7	leucine rich repeat containing 23	protein-coding
108364	chr18	68532421	68532680	+	0	NA	Intergenic	L2c|LINE|L2	182558	NM_001350517	54495		NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
110810	chr19	2471301	2471500	+	0	NA	Intergenic	AluY|SINE|Alu	-4727	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
15435	chr1	150291201	150291400	+	0	NA	Intergenic	AluJb|SINE|Alu	-2542	NM_018997	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
42970	chr11	73770071	73770430	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-9176	NM_001243718	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
64990	chr14	38074701	38075330	+	0	NA	Intergenic	Intergenic	-132889	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
43264	chr11	75565971	75566580	+	0	NA	intron (NM_001207014, intron 2 of 5)	intron (NM_001207014, intron 2 of 5)	4022	NM_001235	871		NM_001235	ENSG00000149257	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46	serpin family H member 1	protein-coding
113654	chr19	10368171	10368580	+	0	NA	exon (NM_003331, exon 4 of 25)	exon (NM_003331, exon 4 of 25)	12197	NM_001385207	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
225371	chr9	34985151	34985750	+	0	NA	TTS (NR_109756)	TTS (NR_109756)	3929	NR_109756	101926900		NR_109756	ENSG00000281491	DNAJB5-DT	DNAJB5-AS1	DNAJB5 divergent transcript	ncRNA
123601	chr19	54482971	54483130	+	0	NA	Intergenic	Intergenic	-9754	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
90347	chr17	1195451	1195880	+	0	NA	intron (NM_001322841, intron 1 of 22)	AluY|SINE|Alu	-8393	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
200036	chr6	129708171	129708650	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	1767	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
152431	chr22	20584971	20585330	+	0	NA	exon (NM_001293237, exon 15 of 17)	exon (NM_001293237, exon 15 of 17)	77103	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
142430	chr20	3910101	3910300	+	0	NA	intron (NM_153640, intron 2 of 6)	intron (NM_153640, intron 2 of 6)	-7294	NR_029519	406896		NR_029519	ENSG00000199024	MIR103A2	MIR103-2|MIRN103-2|mir-103a-2	microRNA 103a-2	ncRNA
170062	chr3	182862821	182863080	+	0	NA	intron (NM_014616, intron 12 of 29)	AluYc3|SINE|Alu	69446	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
199129	chr6	111705501	111705900	+	0	NA	intron (NM_001370529, intron 4 of 11)	AluSx|SINE|Alu	53431	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
206668	chr7	36362551	36362650	+	0	NA	intron (NM_001100425, intron 2 of 6)	L2b|LINE|L2	4640	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
38594	chr11	46279221	46279480	+	0	NA	intron (NM_052854, intron 1 of 11)	intron (NM_052854, intron 1 of 11)	1688	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
191471	chr6	11096121	11096680	+	0	NA	intron (NM_001135575, intron 1 of 1)	intron (NM_001135575, intron 1 of 1)	2566	NM_001135575	221710		NM_001135575	ENSG00000224531	SMIM13	C6orf228	small integral membrane protein 13	protein-coding
64965	chr14	36374051	36374350	+	0	NA	Intergenic	Intergenic	-53524	NM_001144891	51562		NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
123951	chr19	55392271	55393430	+	0	NA	TTS (NM_001136134)	TTS (NM_001136134)	4669	NR_106863	102465483		NR_106863	ENSG00000284029	MIR6805	hsa-mir-6805	microRNA 6805	ncRNA
140891	chr2	237664221	237664480	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-27814	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
113904	chr19	10690501	10690830	+	0	NA	3' UTR (NM_017620, exon 20 of 20)	3' UTR (NM_017620, exon 20 of 20)	-10774	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
83292	chr16	24114921	24115180	+	0	NA	intron (NM_212535, intron 8 of 16)	L2c|LINE|L2	-88066	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
23774	chr1	233261351	233261450	+	0	NA	intron (NM_014801, intron 3 of 33)	intron (NM_014801, intron 3 of 33)	34325	NM_001328607	80003		NM_014801	ENSG00000135749	PCNX2	PCNXL2	pecanex 2	protein-coding
27576	chr10	32367901	32368880	+	0	NA	intron (NR_104163, intron 1 of 1)	L2b|LINE|L2	10379	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
202211	chr6	156791101	156791580	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-11609	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
228212	chr9	97852371	97852600	+	0	NA	promoter-TSS (NM_004473)	promoter-TSS (NM_004473)	595	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
72012	chr15	26830551	26830650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-36462	NM_000810	2558		NM_000810	ENSG00000186297	GABRA5	DEE79|EIEE79	gamma-aminobutyric acid type A receptor subunit alpha5	protein-coding
50588	chr12	48532721	48532980	+	0	NA	Intergenic	L1PA15|LINE|L1	7218	NM_001005203	341568		NM_001005203	ENSG00000284723	OR8S1	-	olfactory receptor family 8 subfamily S member 1	protein-coding
165171	chr3	72375421	72375900	+	0	NA	3' UTR (NM_012234, exon 4 of 4)	3' UTR (NM_012234, exon 4 of 4)	70963	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
24865	chr10	689321	689980	+	0	NA	promoter-TSS (NM_014974)	promoter-TSS (NM_014974)	18	NM_014974	22982		NM_014974	ENSG00000151240	DIP2C	KIAA0934	disco interacting protein 2 homolog C	protein-coding
196546	chr6	44063971	44064130	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	10602	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
186085	chr5	134107321	134108050	+	0	NA	Intergenic	Intergenic	-6996	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
23615	chr1	230186921	230187200	+	0	NA	intron (NM_001291866, intron 2 of 15)	intron (NM_001291866, intron 2 of 15)	119822	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
228983	chr9	113556701	113556900	+	0	NA	intron (NM_001276261, intron 10 of 14)	MIR3|SINE|MIR	-8154	NM_134427	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
210834	chr7	100967671	100968280	+	0	NA	3' UTR (NM_005960, exon 12 of 12)	3' UTR (NM_005960, exon 12 of 12)	-1648	NM_001164462	10071		NM_001164462	ENSG00000205277	MUC12	MUC-11|MUC-12|MUC11	mucin 12, cell surface associated	protein-coding
101067	chr17	64839321	64839900	+	0	NA	Intergenic	Intergenic	-2426	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
198355	chr6	105364401	105364800	+	0	NA	intron (NM_002726, intron 6 of 14)	intron (NM_002726, intron 6 of 14)	38482	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
231069	chr9	129656871	129657030	+	0	NA	Intergenic	Intergenic	-8697	NM_016307	51450		NM_016307	ENSG00000167157	PRRX2	PMX2|PRX2	paired related homeobox 2	protein-coding
22580	chr1	222814451	222815680	+	0	NA	promoter-TSS (NR_165111)	promoter-TSS (NR_165111)	-16	NR_165144	84976		NM_032890	ENSG00000154309	DISP1	DISPA	dispatched RND transporter family member 1	protein-coding
225908	chr9	40108461	40109600	+	0	NA	Intergenic	GSATII|Satellite|centr	-214541	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
29494	chr10	70592821	70593730	+	0	NA	Intergenic	Intergenic	9466	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
98928	chr17	48620101	48621100	+	0	NA	TTS (NM_024017)	TTS (NM_024017)	-5308	NM_024016	3218		NM_024016	ENSG00000120068	HOXB8	HOX2|HOX2D|Hox-2.4	homeobox B8	protein-coding
206696	chr7	36508171	36508530	+	0	NA	Intergenic	Intergenic	91770	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
35088	chr11	626421	627680	+	0	NA	intron (NM_021920, intron 1 of 3)	CpG-3768	131	NM_021920	6343		NM_021920	ENSG00000070031	SCT	-	secretin	protein-coding
115772	chr19	16344321	16344580	+	0	NA	Intergenic	AluSz6|SINE|Alu	19624	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
129040	chr2	65040351	65041080	+	0	NA	Intergenic	Intergenic	-15701	NM_001319101	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
106190	chr18	10608471	10608630	+	0	NA	Intergenic	L1MC5|LINE|L1	17870	NR_146509	102724470		NR_146509		LINC01887	-	long intergenic non-protein coding RNA 1887	ncRNA
221282	chr8	122862371	122863280	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	81170	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
74730	chr15	63194971	63195130	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	5444	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
24890	chr10	1009801	1010400	+	0	NA	intron (NM_012341, intron 12 of 16)	intron (NM_012341, intron 12 of 16)	-12537	NR_027709	55853		NM_018470	ENSG00000232656	IDI2-AS1	C10orf110|HT009|IDI2-AS	IDI2 antisense RNA 1	ncRNA
199994	chr6	128252671	128253250	+	0	NA	intron (NM_001291983, intron 2 of 18)	intron (NM_001291983, intron 2 of 18)	225095	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
234500	chrX	19214301	19214500	+	0	NA	Intergenic	Intergenic	-91763	NM_001184833	10149		NM_005756	ENSG00000173698	ADGRG2	CBAVDX|EDDM6|GPR64|HE6|TM7LN2	adhesion G protein-coupled receptor G2	protein-coding
50312	chr12	46513901	46514100	+	0	NA	intron (NR_125380, intron 3 of 3)	L1PA14|LINE|L1	129893	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
212764	chr7	129948701	129949650	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	3785	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
221913	chr8	129157571	129157900	+	0	NA	Intergenic	L1PA2|LINE|L1	83505	NR_033916	728724		NR_033916	ENSG00000229140	LINC00977	-	long intergenic non-protein coding RNA 977	ncRNA
225658	chr9	36437801	36438400	+	0	NA	Intergenic	AluJb|SINE|Alu	-36902	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
36157	chr11	3145321	3145780	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	19760	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
227832	chr9	93457901	93458100	+	0	NA	intron (NM_001286723, intron 1 of 9)	intron (NM_001286723, intron 1 of 9)	-4399	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
211711	chr7	106868451	106869030	+	0	NA	exon (NM_002649, exon 2 of 11)	exon (NM_002649, exon 2 of 11)	3261	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
131962	chr2	99488701	99490750	+	0	NA	intron (NM_001321460, intron 1 of 23)	CpG	292	NM_001321455	51455		NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1 DNA directed polymerase	protein-coding
205095	chr7	6731171	6731800	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3820	NR_002217	441194		NR_002217	ENSG00000187953	PMS2CL	PMS2P13	PMS2 C-terminal like (pseudogene)	pseudo
187396	chr5	141886871	141887230	+	0	NA	Intergenic	AluSz|SINE|Alu	-8640	NM_002587	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
123739	chr19	55064321	55064850	+	0	NA	intron (NM_138412, intron 1 of 7).5	L1MB3|LINE|L1	-1437	NR_027381	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
97572	chr17	44092121	44092850	+	0	NA	exon (NM_001015053, exon 8 of 27)	exon (NM_001015053, exon 8 of 27)	21574	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
204493	chr7	4765821	4766630	+	0	NA	3' UTR (NM_001037165, exon 9 of 9)	3' UTR (NM_001037165, exon 9 of 9)	-9398	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
18977	chr1	169103601	169104200	+	0	NA	promoter-TSS (NR_135799)	promoter-TSS (NR_135799)	-224	NR_135799	101928596		NR_135799	ENSG00000237707	LOC101928596	-	uncharacterized LOC101928596	ncRNA
86245	chr16	58248801	58249000	+	0	NA	Intergenic	MamTip3|DNA|hAT-Tip100	-1036	NM_014157	29070		NM_014157	ENSG00000103021	CFAP263	CCDC113|HSPC065	cilia and flagella associated protein 263	protein-coding
124259	chr19	57694821	57695080	+	0	NA	Intergenic	Intergenic	12973	NM_138347	90233		NM_138347	ENSG00000204519	ZNF551	-	zinc finger protein 551	protein-coding
91180	chr17	3848851	3848950	+	0	NA	Intergenic	AluY|SINE|Alu	-2654	NM_001114118	55421		NM_018553	ENSG00000074356	NCBP3	C17orf85|ELG|HSA277841	nuclear cap binding subunit 3	protein-coding
222446	chr8	136443601	136443800	+	0	NA	Intergenic	L1HS|LINE|L1	-87098	NR_147196	107986980		NR_147196	ENSG00000254101	LINC02055	-	long intergenic non-protein coding RNA 2055	ncRNA
233048	chr9	137053201	137054500	+	0	NA	intron (NM_203468, intron 1 of 8)	CpG	211	NM_001246	954		NM_001246	ENSG00000054179	ENTPD2	CD39L1|NTPDase-2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding
206940	chr7	38239071	38239730	+	0	NA	Intergenic	Intergenic	34247	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
85659	chr16	56226021	56226280	+	0	NA	intron (NM_020988, intron 2 of 8)	L2a|LINE|L2	-19370	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
81651	chr16	10949201	10949800	+	0	NA	intron (NM_001243403, intron 1 of 20)	L2b|LINE|L2	4936	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
212663	chr7	129544701	129545100	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	42369	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
107706	chr18	49563321	49563580	+	0	NA	intron (NM_006033, intron 1 of 9)	L2a|LINE|L2	1393	NM_006033	9388		NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding
218781	chr8	58989851	58990250	+	0	NA	intron (NM_014729, intron 1 of 8)	MIR|SINE|MIR	129097	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
19419	chr1	174189501	174190100	+	0	NA	intron (NM_001366447, intron 1 of 20)	AluJo|SINE|Alu	30280	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
58305	chr12	130873671	130873830	+	0	NA	intron (NM_001300796, intron 3 of 5)	intron (NM_001300796, intron 3 of 5)	1684	NM_006325	5901		NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
41134	chr11	65579601	65579800	+	0	NA	intron (NM_001099409, intron 3 of 18)	AluSz6|SINE|Alu	3647	NM_001099409	254102		NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1 like 1	protein-coding
145515	chr20	44028871	44029630	+	0	NA	intron (NM_032883, intron 4 of 9)	intron (NM_032883, intron 4 of 9)	83354	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
138263	chr2	203364351	203364450	+	0	NA	intron (NM_001375663, intron 2 of 12)	intron (NM_001375663, intron 2 of 12)	36006	NM_001375721	10152		NM_005759	ENSG00000138443	ABI2	ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB	abl interactor 2	protein-coding
55476	chr12	104696771	104696930	+	0	NA	intron (NM_018413, intron 2 of 2)	L1ME3Cz|LINE|L1	105217	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
201264	chr6	144156451	144156780	+	0	NA	intron (NM_003764, intron 1 of 1)	intron (NM_003764, intron 1 of 1)	6098	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
185686	chr5	131795371	131795530	+	0	NA	intron (NM_133372, intron 1 of 17)	intron (NM_133372, intron 1 of 17)	1567	NM_001008738	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
54449	chr12	91871001	91872080	+	0	NA	Intergenic	Intergenic	270173	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
52864	chr12	57131901	57132900	+	0	NA	intron (NM_002332, intron 1 of 88)	intron (NM_002332, intron 1 of 88)	3917	NM_002332	4035		NM_002332	ENSG00000123384	LRP1	A2MR|APOER|APR|CD91|DDH3|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5	LDL receptor related protein 1	protein-coding
176629	chr4	99818471	99818850	+	0	NA	intron (NM_014395, intron 1 of 8)	intron (NM_014395, intron 1 of 8)	1833	NM_014395	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
208716	chr7	73310821	73311080	+	0	NA	Intergenic	AluSz|SINE|Alu	-2083	NM_001168348	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
230885	chr9	129205501	129205700	+	0	NA	Intergenic	MIRb|SINE|MIR	-27339	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
149928	chr21	36258801	36259000	+	0	NA	intron (NM_001320714, intron 23 of 36)	intron (NM_001320714, intron 23 of 36)	-61289	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
211442	chr7	105072251	105073000	+	0	NA	intron (NM_182931, intron 6 of 26)	intron (NM_182931, intron 6 of 26)	58420	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
14982	chr1	148042221	148042730	+	0	NA	Intergenic	AluSx|SINE|Alu	-3559	NR_004426	26864		NR_004426	ENSG00000206585	RNVU1-7	RNU1-26P|RNU1-6|RNU1-6P|RNU1-9|RNU1-9P|RNVU1-9|vU1.7|vU1.9	RNA, variant U1 small nuclear 7	snRNA
148238	chr20	63633351	63633450	+	0	NA	Intergenic	AluSq2|SINE|Alu	6165	NR_132418	100505771		NR_132417	ENSG00000232442	MHENCR	-	melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489	ncRNA
198967	chr6	110885251	110885650	+	0	NA	intron (NM_001287216, intron 1 of 4)	AluSx|SINE|Alu	10666	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
159507	chr3	14400351	14401130	+	0	NA	Intergenic	Intergenic	-1836	NM_001134367	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
201786	chr6	149976101	149976500	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	12357	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
93436	chr17	18600551	18600650	+	0	NA	intron (NR_036647, intron 6 of 16)	L2a|LINE|L2	25017	NR_036647	284047		NR_036647	ENSG00000291090	CCDC144BP	CCDC144B	coiled-coil domain containing 144B, pseudogene	pseudo
104385	chr17	81031771	81032700	+	0	NA	non-coding (NR_026857, exon 2 of 2)	non-coding (NR_026857, exon 2 of 2)	2484	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
67218	chr14	68944571	68945480	+	0	NA	intron (NM_001130004, intron 1 of 21)	AluSx|SINE|Alu	34277	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
12523	chr1	108504521	108505310	+	0	NA	Intergenic	L2a|LINE|L2	54572	NM_001143988	653149		NM_001143987	ENSG00000186086	NBPF6	-	NBPF member 6	protein-coding
152368	chr22	20505101	20505680	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2220	NM_001293236	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
220562	chr8	100719321	100720300	+	0	NA	intron (NM_002568, intron 1 of 14)	intron (NM_002568, intron 1 of 14)	2278	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
110204	chr19	1743071	1743230	+	0	NA	Intergenic	Intergenic	-10356	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
120251	chr19	42422671	42424530	+	0	NA	promoter-TSS (NR_073179)	promoter-TSS (NR_073179)	-155	NR_073179	100996307		NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
102506	chr17	75773101	75774200	+	0	NA	Intergenic	Intergenic	6129	NM_005324	3021		NM_005324	ENSG00000132475	H3-3B	BRYLIB2|H3-3A|H3.3B|H3F3B	H3.3 histone B	protein-coding
239093	chrY	10472871	10473030	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	562152	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
129454	chr2	69559071	69559230	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-38979	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
130513	chr2	85601221	85601480	+	0	NA	intron (NM_153342, intron 3 of 6)	intron (NM_153342, intron 3 of 6)	1044	NM_001369917	129303		NM_153342	ENSG00000168890	TMEM150A	TM6P1|TMEM150|TTN1	transmembrane protein 150A	protein-coding
119401	chr19	40234551	40235280	+	0	NA	intron (NM_001243027, intron 13 of 13)	intron (NM_001243027, intron 13 of 13)	-8226	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
53009	chr12	57521701	57525180	+	0	NA	intron (NM_052897, intron 1 of 12)	intron (NM_052897, intron 1 of 12)	616	NM_052897	114785		NM_052897	ENSG00000166987	MBD6	-	methyl-CpG binding domain protein 6	protein-coding
36359	chr11	3938651	3938750	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluSx|SINE|Alu	82638	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
41515	chr11	66262601	66263280	+	0	NA	exon (NM_001134776, exon 5 of 16)	exon (NM_001134776, exon 5 of 16)	5237	NM_001134774	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
32693	chr10	103977371	103977530	+	0	NA	intron (NM_014720, intron 1 of 18)	AluJr|SINE|Alu	10310	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
10082	chr1	58814801	58815720	+	0	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	30109	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
166244	chr3	112294251	112294350	+	0	NA	promoter-TSS (NM_001320531).2	promoter-TSS (NM_001320531).2	-84	NR_135297	285335		NM_183061	ENSG00000172139	SLC9C1	NHE|NHE-10|SLC9A10|sperm-NHE	solute carrier family 9 member C1	protein-coding
100928	chr17	64472201	64472980	+	0	NA	intron (NM_001369493, intron 9 of 9)	Tigger3a|DNA|TcMar-Tigger	23475	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
231110	chr9	129814421	129814680	+	0	NA	intron (NM_000113, intron 4 of 4)	L2b|LINE|L2	9586	NM_000113	1861		NM_000113	ENSG00000136827	TOR1A	AMC5|DQ2|DYT1	torsin family 1 member A	protein-coding
3517	chr1	16057901	16058500	+	0	NA	TTS (NM_001165945)	TTS (NM_001165945)	9438	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
23254	chr1	227828771	227828930	+	0	NA	intron (NM_001374657, intron 3 of 3)	L1PA12|LINE|L1	13133	NM_183062	339501		NM_183062	ENSG00000185888	PRSS38	MPN2	serine protease 38	protein-coding
60320	chr13	40658901	40659350	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSg|SINE|Alu	7516	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
14791	chr1	146116601	146116800	+	0	NA	intron (NM_001302371, intron 26 of 89)	intron (NM_001302371, intron 26 of 89)	28104	NM_001302371	100132406		NM_001039703	ENSG00000271425	NBPF10	AB6|AG1|NBPF9	NBPF member 10	protein-coding
57027	chr12	120684501	120684950	+	0	NA	Intergenic	MIR|SINE|MIR	-2424	NM_014730	9761		NM_014730	ENSG00000110917	MLEC	KIAA0152	malectin	protein-coding
210007	chr7	93119171	93119700	+	0	NA	Intergenic	L1PBa1|LINE|L1	-1412	NM_001193307	54809		NM_017654	ENSG00000205413	SAMD9	C7orf5|DRIF1|M7MLS2|MIRAGE|NFTC|OEF1|OEF2	sterile alpha motif domain containing 9	protein-coding
192156	chr6	17281371	17281880	+	0	NA	promoter-TSS (NM_001143941)	promoter-TSS (NM_001143941)	264	NM_001143942	221662		NM_153020	ENSG00000112183	RBM24	RNPC6|dJ259A10.1	RNA binding motif protein 24	protein-coding
87467	chr16	71542301	71542580	+	0	NA	Intergenic	Intergenic	16014	NM_001166395	10164		NM_005769	ENSG00000140835	CHST4	GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST	carbohydrate sulfotransferase 4	protein-coding
131616	chr2	96940351	96940450	+	0	NA	intron (NM_001122646, intron 8 of 16)	intron (NM_001122646, intron 8 of 16)	21294	NR_110209	101927053		NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
147818	chr20	62707521	62708250	+	0	NA	promoter-TSS (NM_002531)	promoter-TSS (NM_002531)	-951	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
212286	chr7	123748151	123749730	+	0	NA	promoter-TSS (NM_003941)	promoter-TSS (NM_003941)	63	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
217564	chr8	29408071	29409200	+	0	NA	Intergenic	Intergenic	-57951	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
220475	chr8	100445171	100445330	+	0	NA	Intergenic	Intergenic	62487	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
200584	chr6	136549701	136551100	+	0	NA	exon (NM_001198616, exon 1 of 17)	exon (NM_001198616, exon 1 of 17)	419	NM_001198616	9053		NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
187431	chr5	142035071	142035230	+	0	NA	Intergenic	Intergenic	-22123	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
23432	chr1	228408471	228409230	+	0	NA	TTS (NM_001134855)	TTS (NM_001134855)	-2015	NM_145214	81559		NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
127202	chr2	38559851	38560150	+	0	NA	Intergenic	AluY|SINE|Alu	42928	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
644	chr1	1346521	1346780	+	0	NA	intron (NM_004421, intron 1 of 14)	intron (NM_004421, intron 1 of 14)	2768	NM_004421	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
79872	chr16	1528351	1528650	+	0	NA	promoter-TSS (NM_001256541)	promoter-TSS (NM_001256541)	-178	NM_001256541	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
155033	chr22	37476721	37477180	+	0	NA	exon (NM_002405, exon 5 of 8)	exon (NM_002405, exon 5 of 8)	9434	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
146186	chr20	48759251	48759350	+	0	NA	intron (NM_020820, intron 1 of 39)	AluSx|SINE|Alu	68699	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
161960	chr3	46276351	46277050	+	0	NA	Intergenic	Intergenic	34240	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
138686	chr2	213071571	213071930	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	78687	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
154435	chr22	35349501	35349730	+	0	NA	Intergenic	Intergenic	-12816	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
238180	chrX	136876751	136876850	+	0	NA	intron (NR_028476, intron 3 of 7)	AluSg|SINE|Alu	2471	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
51553	chr12	52554551	52554850	+	0	NA	Intergenic	Intergenic	-1555	NM_033448	112802		NM_033448	ENSG00000139648	KRT71	HYPT13|K6IRS1|KRT6IRS|KRT6IRS1	keratin 71	protein-coding
185263	chr5	123610951	123611320	+	0	NA	intron (NM_001364144, intron 11 of 11)	intron (NM_001364144, intron 11 of 11)	65718	NM_001044723	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
88400	chr16	84641021	84641850	+	0	NA	Intergenic	Intergenic	-7076	NM_001303451	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
163669	chr3	52226051	52227780	+	0	NA	promoter-TSS (NM_017442)	promoter-TSS (NM_017442)	-752	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
193491	chr6	30551921	30553380	+	0	NA	exon (NM_005275, exon 8 of 12)	exon (NM_005275, exon 8 of 12)	-4059	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
208133	chr7	62859351	62859450	+	0	NA	Intergenic	L1PA2|LINE|L1	444656	NR_003952	643955		NR_003952	ENSG00000290558	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
225877	chr9	39351501	39351700	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-4069	NM_001085452	647060		NM_001040065	ENSG00000204849	SPATA31A1	C9orf36|C9orf36A|FAM75A1|FAM75A2|SPATA31A2	SPATA31 subfamily A member 1	protein-coding
178348	chr4	145931701	145931900	+	0	NA	intron (NM_178835, intron 1 of 14)	intron (NM_178835, intron 1 of 14)	7023	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
131134	chr2	91499301	91499880	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	160359	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
88168	chr16	81707371	81708150	+	0	NA	intron (NM_030629, intron 20 of 20)	intron (NM_030629, intron 20 of 20)	42406	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
89234	chr16	88635851	88636380	+	0	NA	Intergenic	Intergenic	-2457	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
169774	chr3	172666501	172667380	+	0	NA	intron (NM_001146276, intron 1 of 4)	intron (NM_001146276, intron 1 of 4)	44127	NM_001146276	57552		NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
44855	chr11	114159771	114161350	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	-97246	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
75461	chr15	65862551	65863200	+	0	NA	Intergenic	Intergenic	-6616	NM_004663	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
144899	chr20	36941401	36942230	+	0	NA	intron (NM_001363733, intron 2 of 15)	intron (NM_001363733, intron 2 of 15)	9893	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
71469	chr14	105896221	105896480	+	0	NA	Intergenic	Intergenic	-21629	NR_026800	9834		NM_014151	ENSG00000226777	FAM30A	C14orf110|HSPC053|KIAA0125	family with sequence similarity 30 member A	ncRNA
378	chr1	1036871	1037030	+	0	NA	intron (NM_198576, intron 3 of 35)	intron (NM_198576, intron 3 of 35)	2957	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
88861	chr16	87688001	87688200	+	0	NA	intron (NM_020655, intron 3 of 4)	intron (NM_020655, intron 3 of 4)	77886	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
163580	chr3	51957671	51958050	+	0	NA	TTS (NM_080865)	TTS (NM_080865)	2479	NM_080865	118442		NM_080865	ENSG00000180929	GPR62	GPCR8|KPG_005	G protein-coupled receptor 62	protein-coding
19843	chr1	182887271	182887430	+	0	NA	non-coding (NR_033302, exon 29 of 29)	non-coding (NR_033302, exon 29 of 29)	-47759	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
222479	chr8	140272921	140273480	+	0	NA	intron (NR_164662, intron 14 of 22)	intron (NR_164662, intron 14 of 22)	-172665	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
140397	chr2	233080381	233080750	+	0	NA	intron (NM_001017915, intron 2 of 26).2	L3b|LINE|CR1	20223	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
155339	chr22	38226571	38226930	+	0	NA	intron (NM_001195071, intron 6 of 8)	intron (NM_001195071, intron 6 of 8)	-2030	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
204215	chr7	2521501	2524930	+	0	NA	intron (NM_001040168, intron 1 of 7)	intron (NM_001040168, intron 1 of 7)	3441	NM_001040167	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
90149	chr17	139821	140450	+	0	NA	Intergenic	Intergenic	2566	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
15612	chr1	150614771	150615130	+	0	NA	Intergenic	AluSx3|SINE|Alu	14183	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
70246	chr14	101535221	101536080	+	0	NA	Intergenic	Intergenic	24772	NR_152590	64150		NM_022345	ENSG00000258498	DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand upstream RNA	ncRNA
53663	chr12	68384021	68384380	+	0	NA	Intergenic	AluSz|SINE|Alu	-51786	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
54813	chr12	94675801	94676780	+	0	NA	Intergenic	MIRb|SINE|MIR	-25733	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
3815	chr1	16760871	16761030	+	0	NA	intron (NM_001271733, intron 2 of 14)	intron (NM_001271733, intron 2 of 14)	3530	NM_001271733	11223		NM_001271733	ENSG00000186715	MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P|MST1P7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1 like (pseudogene)	pseudo
89452	chr16	89006971	89007130	+	0	NA	Intergenic	Intergenic	-29843	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
75800	chr15	68844851	68845450	+	0	NA	Intergenic	L1MB7|LINE|L1	-24255	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
214803	chr7	151175721	151175980	+	0	NA	3' UTR (NM_001142459, exon 6 of 6)	3' UTR (NM_001142459, exon 6 of 6)	-8302	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
193760	chr6	31345851	31345950	+	0	NA	Intergenic	Intergenic	9416	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
82757	chr16	21422501	21422700	+	0	NA	intron (NM_130464, intron 2 of 12)	intron (NM_130464, intron 2 of 12)	2778	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
91833	chr17	7191321	7192350	+	0	NA	intron (NR_135527, intron 19 of 20)	intron (NR_135527, intron 19 of 20)	-12271	NM_001197216	432		NM_001671	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
161648	chr3	43317371	43318300	+	0	NA	intron (NM_017719, intron 3 of 6)	MIRb|SINE|MIR	31295	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
168445	chr3	142905121	142905380	+	0	NA	Intergenic	L2c|LINE|L2	-16167	NM_013363	26577		NM_013363	ENSG00000163710	PCOLCE2	PCPE2	procollagen C-endopeptidase enhancer 2	protein-coding
232889	chr9	136842151	136843300	+	0	NA	intron (NM_001080482, intron 1 of 2)	(AGGCA)n|Simple_repeat|Simple_repeat	247	NM_001080482	389813		NM_001080482	ENSG00000232434	AJM1	C9orf172|ajm-1	apical junction component 1 homolog	protein-coding
102887	chr17	76522951	76523900	+	0	NA	Intergenic	Intergenic	-4161	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
189707	chr5	176520871	176521300	+	0	NA	Intergenic	Intergenic	16317	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
40414	chr11	64150871	64151430	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	14963	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
169673	chr3	171772521	171772780	+	0	NA	intron (NM_001130081, intron 1 of 25)	intron (NM_001130081, intron 1 of 25)	37833	NM_001130081	5337		NM_002662	ENSG00000075651	PLD1	CVDD|CVDP1	phospholipase D1	protein-coding
159886	chr3	16887271	16887430	+	0	NA	intron (NM_001144382, intron 1 of 5)	L2a|LINE|L2	2395	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
34770	chr11	203951	204530	+	0	NA	3' UTR (NM_001098787, exon 4 of 4)	3' UTR (NM_001098787, exon 4 of 4)	3182	NM_001098787	51272		NM_016465	ENSG00000177951	BET1L	BET1L1|GOLIM3|GS15|HSPC197	Bet1 golgi vesicular membrane trafficking protein like	protein-coding
217105	chr8	24914601	24915830	+	0	NA	5' UTR (NM_001105541, exon 1 of 3)	5' UTR (NM_001105541, exon 1 of 3)	228	NM_001105541	4741		NM_005382	ENSG00000104722	NEFM	NEF3|NF-M|NFM	neurofilament medium chain	protein-coding
92491	chr17	8873971	8874930	+	0	NA	Intergenic	Intergenic	-6773	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
1697	chr1	4710901	4711500	+	0	NA	intron (NM_018836, intron 1 of 5)	intron (NM_018836, intron 1 of 5)	56591	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
92805	chr17	16006971	16007330	+	0	NA	intron (NM_017775, intron 7 of 9)	L2a|LINE|L2	7326	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
74828	chr15	63494371	63494730	+	0	NA	Intergenic	Intergenic	-9961	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
193517	chr6	30584301	30584700	+	0	NA	TTS (NR_030615).2	TTS (NR_030615).2	168	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
57199	chr12	121471401	121471780	+	0	NA	intron (NM_001005366, intron 12 of 22)	intron (NM_001005366, intron 12 of 22)	-27238	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
109397	chr19	670471	671400	+	0	NA	Intergenic	Intergenic	-5457	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
117737	chr19	29613051	29613350	+	0	NA	intron (NR_027368, intron 4 of 5)	L2a|LINE|L2	6917	NR_027368	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
239399	chrY	22598771	22599050	+	0	NA	Intergenic	L1PA10|LINE|L1	108513	NM_004676	9081		NM_004676	ENSG00000169789	PRY	PRY1|PTPN13LY	PTPN13 like Y-linked	protein-coding
33894	chr10	124470721	124471230	+	0	NA	intron (NM_001167880, intron 1 of 5)	intron (NM_001167880, intron 1 of 5)	9152	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
196579	chr6	44154971	44155330	+	0	NA	3' UTR (NM_018426, exon 24 of 24)	3' UTR (NM_018426, exon 24 of 24)	-3670	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105489	chr17	83080501	83082300	+	0	NA	5' UTR (NM_001363853, exon 1 of 5)	5' UTR (NM_001363853, exon 1 of 5)	254	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
235487	chrX	46838101	46838500	+	0	NA	intron (NM_006915, intron 1 of 4)	Tigger19b|DNA|TcMar-Tigger	1257	NM_006915	6102		NM_006915	ENSG00000102218	RP2	DELXp11.3|NM23-H10|NME10|TBCCD2|XRP2	RP2 activator of ARL3 GTPase	protein-coding
99987	chr17	57696721	57697280	+	0	NA	Intergenic	Intergenic	48299	NM_001282544	101927581		NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
49531	chr12	26097101	26097380	+	0	NA	Intergenic	Intergenic	27797	NM_030762	79365		NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|FNSS1|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding
170178	chr3	183660771	183661180	+	0	NA	intron (NM_001349429, intron 4 of 8)	AluY|SINE|Alu	25352	NR_146170	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
74121	chr15	55195451	55195550	+	0	NA	intron (NM_016304, intron 1 of 5)	intron (NM_016304, intron 1 of 5)	1441	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
152396	chr22	20546671	20546980	+	0	NA	intron (NM_001003891, intron 2 of 17)	L1MC5a|LINE|L1	38778	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
112316	chr19	5895571	5895830	+	0	NA	intron (NM_175614, intron 3 of 3)	intron (NM_175614, intron 3 of 3)	8090	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
213681	chr7	140078451	140079280	+	0	NA	Intergenic	AluSx3|SINE|Alu	-15914	NR_130117	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
71593	chr14	106530421	106531080	+	0	NA	Intergenic	Intergenic	48311	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
25163	chr10	5297351	5297700	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-26289	NR_149060	110806285		NR_149060	ENSG00000224034	LINC02561	-	long intergenic non-protein coding RNA 2561	ncRNA
226973	chr9	81687921	81688200	+	0	NA	intron (NM_001303104, intron 1 of 19)	CpG-28428	1475	NM_001303104	7088		NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1|TLE-1	TLE family member 1, transcriptional corepressor	protein-coding
36651	chr11	8006171	8006700	+	0	NA	Intergenic	Intergenic	10074	NR_125366	103581031		NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility 23	ncRNA
188075	chr5	150130871	150131230	+	0	NA	intron (NM_001355016, intron 7 of 21)	MER113|DNA|hAT-Charlie	-17678	NM_005211	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
138328	chr2	203784721	203785280	+	0	NA	Intergenic	LTR12C|LTR|ERV1	78361	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123528	chr19	54285471	54285940	+	0	NA	Intergenic	L1PA15-16|LINE|L1	3596	NR_039907	100616171		NR_039907	ENSG00000264703	MIR4752	-	microRNA 4752	ncRNA
152841	chr22	21980851	21981400	+	0	NA	intron (NM_001349847, intron 1 of 18)	intron (NM_001349847, intron 1 of 18)	1662	NM_001349847	8940		NM_003935	ENSG00000100038	TOP3B	TOP3B1	DNA topoisomerase III beta	protein-coding
78285	chr15	90882271	90882930	+	0	NA	non-coding (NR_168464, exon 16 of 16)	non-coding (NR_168464, exon 16 of 16)	-1904	NM_002005	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
103069	chr17	77280651	77281980	+	0	NA	promoter-TSS (NM_001293695)	promoter-TSS (NM_001293695)	-184	NM_001293695	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
128639	chr2	61413171	61413330	+	0	NA	intron (NM_014709, intron 2 of 79)	AluSc|SINE|Alu	4127	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
223984	chr9	2044051	2044580	+	0	NA	intron (NM_003070, intron 4 of 33)	intron (NM_003070, intron 4 of 33)	22370	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
233067	chr9	137081951	137082800	+	0	NA	intron (NM_207309, intron 8 of 8)	intron (NM_207309, intron 8 of 8)	4442	NR_027447	100289341		NR_027447	ENSG00000268996	MAN1B1-DT	MAN1B1-AS1	MAN1B1 divergent transcript	ncRNA
63728	chr14	21212451	21213130	+	0	NA	intron (NM_001077443, intron 5 of 7)	AluSx|SINE|Alu	-5890	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
142840	chr20	17568021	17568680	+	0	NA	intron (NM_001278608, intron 1 of 9)	intron (NM_001278608, intron 1 of 9)	870	NM_001278608	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
29267	chr10	69173601	69173800	+	0	NA	3' UTR (NM_004896, exon 9 of 9)	3' UTR (NM_004896, exon 9 of 9)	-6534	NM_003171	6832		NM_003171	ENSG00000156502	SUPV3L1	SUV3	Suv3 like RNA helicase	protein-coding
142375	chr20	3801851	3802330	+	0	NA	exon (NM_021873, exon 10 of 16)	exon (NM_021873, exon 10 of 16)	2028	NM_001287524	994		NM_004358	ENSG00000101224	CDC25B	-	cell division cycle 25B	protein-coding
236624	chrX	74550101	74550690	+	0	NA	Intergenic	TAR1|Satellite|telo	64229	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
140073	chr2	231440151	231440450	+	0	NA	Intergenic	L1ME2|LINE|L1	15636	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
95854	chr17	38827971	38828130	+	0	NA	Intergenic	AluSx|SINE|Alu	2212	NR_039880	100616416		NR_039880	ENSG00000274054	MIR4727	mir-4727	microRNA 4727	ncRNA
31245	chr10	91926101	91926300	+	0	NA	intron (NR_165098, intron 1 of 38)	Tigger19a|DNA|TcMar-Tigger	2430	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
133264	chr2	113439271	113439430	+	0	NA	intron (NM_001330340, intron 2 of 16)	intron (NM_001330340, intron 2 of 16)	1659	NR_138473	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
221105	chr8	117969851	117970150	+	0	NA	intron (NM_000127, intron 1 of 10)	MIR3|SINE|MIR	-49087	NR_145799	109623457		NR_145799		SNORD168	-	small nucleolar RNA, C/D box 168	snoRNA
202354	chr6	157667221	157667680	+	0	NA	intron (NM_153746, intron 8 of 8)	intron (NM_153746, intron 8 of 8)	138318	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
130132	chr2	74762851	74762950	+	0	NA	Intergenic	Intergenic	-71227	NM_000189	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
218302	chr8	42516351	42516980	+	0	NA	intron (NM_006749, intron 1 of 10)	L3|LINE|CR1	-15434	NM_001257180	6575		NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC2|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
63183	chr13	113732321	113732900	+	0	NA	intron (NM_002929, intron 5 of 6)	intron (NM_002929, intron 5 of 6)	18479	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
173936	chr4	25662021	25662280	+	0	NA	intron (NM_001177999, intron 1 of 12)	AluSq2|SINE|Alu	5686	NM_001177999	10568		NM_006424	ENSG00000157765	SLC34A2	NAPI-3B|NAPI-IIb|NPTIIb|NaPi2b|PULAM	solute carrier family 34 member 2	protein-coding
81157	chr16	4419701	4420050	+	0	NA	Intergenic	MIRb|SINE|MIR	-3279	NM_024535	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
8763	chr1	42734971	42735330	+	0	NA	3' UTR (NM_001185117, exon 3 of 3)	3' UTR (NM_001185117, exon 3 of 3)	5086	NM_148960	149461		NM_148960	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
115549	chr19	15508201	15509000	+	0	NA	promoter-TSS (NM_173483)	promoter-TSS (NM_173483)	75	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
76916	chr15	78044401	78045400	+	0	NA	exon (NM_015079, exon 3 of 13)	exon (NM_015079, exon 3 of 13)	32752	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
6709	chr1	29230321	29231450	+	0	NA	promoter-TSS (NM_016011)	promoter-TSS (NM_016011)	49	NR_146214	51102		NM_016011	ENSG00000116353	MECR	CGI-63|DYTOABG|ETR1|FASN2B|NRBF1|OPA16	mitochondrial trans-2-enoyl-CoA reductase	protein-coding
24423	chr1	243495921	243496180	+	0	NA	intron (NM_001350251, intron 20 of 20).2	intron (NM_001350251, intron 20 of 20).2	149874	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
101048	chr17	64810501	64810700	+	0	NA	intron (NR_024386, intron 4 of 10)	intron (NR_024386, intron 4 of 10)	11502	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
182143	chr5	56297551	56297650	+	0	NA	Intergenic	Intergenic	-64270	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
239520	chrY	56837471	56837830	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-116605	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
236723	chrX	78103371	78104600	+	0	NA	promoter-TSS (NM_000291)	promoter-TSS (NM_000291)	-263	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
109073	chr18	79916921	79918150	+	0	NA	intron (NM_001146343, intron 3 of 3)	intron (NM_001146343, intron 3 of 3)	34118	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
203962	chr7	1561551	1561950	+	0	NA	Intergenic	Intergenic	-5545	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
121737	chr19	47738021	47738280	+	0	NA	intron (NM_014601, intron 5 of 5)	AluSz6|SINE|Alu	-7396	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
37923	chr11	34173051	34173380	+	0	NA	exon (NM_145804, exon 4 of 17)	exon (NM_145804, exon 4 of 17)	67586	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
216771	chr8	22494851	22495150	+	0	NA	intron (NM_005605, intron 3 of 13)	AluJr|SINE|Alu	53922	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
110429	chr19	1970051	1970650	+	0	NA	intron (NM_001319, intron 2 of 11)	intron (NM_001319, intron 2 of 11)	-15801	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
28011	chr10	43194001	43194400	+	0	NA	TTS (NM_145313)	TTS (NM_145313)	35539	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
24375	chr1	241642321	241642580	+	0	NA	Intergenic	LTR19A|LTR|ERV1	-2081	NM_001381854	1122		NM_001821	ENSG00000203668	CHML	REP2	CHM like Rab escort protein	protein-coding
59337	chr13	24541271	24542150	+	0	NA	promoter-TSS (NR_158455)	promoter-TSS (NR_158455)	10	NR_158455	105370295		NR_158453	ENSG00000287376	LOC105370295	-	uncharacterized LOC105370295	ncRNA
37892	chr11	34055301	34056000	+	0	NA	intron (NM_203364, intron 2 of 17)	intron (NM_203364, intron 2 of 17)	3919	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
220798	chr8	102659601	102660030	+	0	NA	intron (NR_160672, intron 1 of 4)	intron (NR_160672, intron 1 of 4)	3567	NR_160673	101927245		NR_160672	ENSG00000283959	LOC101927245	-	uncharacterized LOC101927245	ncRNA
96453	chr17	40218271	40220230	+	0	NA	promoter-TSS (NM_133264)	promoter-TSS (NM_133264)	-54	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
126372	chr2	27446321	27446880	+	0	NA	TTS (NM_001168364)	TTS (NM_001168364)	4219	NM_001321325	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
227442	chr9	90219551	90220250	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-178401	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
97256	chr17	43002421	43002750	+	0	NA	intron (NM_001349921, intron 3 of 4)	intron (NM_001349921, intron 3 of 4)	4166	NM_001349922	6155		NM_000988	ENSG00000131469	RPL27	DBA16|L27|eL27	ribosomal protein L27	protein-coding
208512	chr7	69823221	69823480	+	0	NA	intron (NM_001127232, intron 1 of 4)	intron (NM_001127232, intron 1 of 4)	224875	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
222511	chr8	140542671	140543230	+	0	NA	intron (NM_012154, intron 14 of 18)	AluSx1|SINE|Alu	30954	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
55534	chr12	105329171	105329450	+	0	NA	Intergenic	AluSg|SINE|Alu	-1381	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
42472	chr11	69718271	69718430	+	0	NA	Intergenic	Intergenic	-14328	NM_005117	9965		NM_005117	ENSG00000162344	FGF19	-	fibroblast growth factor 19	protein-coding
64492	chr14	24316451	24316550	+	0	NA	exon (NM_001143919, exon 2 of 2).2	exon (NM_001143919, exon 2 of 2).2	3393	NM_181657	1241		NM_181657	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
182392	chr5	61283401	61284180	+	0	NA	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-18861	NR_146624	105378992		NR_146624	ENSG00000249279	LINC02057	-	long intergenic non-protein coding RNA 2057	ncRNA
107935	chr18	57833551	57833880	+	0	NA	Intergenic	Intergenic	-30400	NM_001374385	5205		NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
48008	chr12	6927371	6928550	+	0	NA	promoter-TSS (NM_001940)	promoter-TSS (NM_001940)	1	NM_001940	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
77159	chr15	79973401	79973850	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-2429	NM_004049	597		NM_004049	ENSG00000140379	BCL2A1	ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1	BCL2 related protein A1	protein-coding
148149	chr20	63501621	63501880	+	0	NA	Intergenic	Intergenic	-2667	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
206647	chr7	36155971	36156330	+	0	NA	intron (NM_030636, intron 2 of 7)	intron (NM_030636, intron 2 of 7)	2896	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
136649	chr2	179991301	179991500	+	0	NA	intron (NM_001376029, intron 2 of 19)	intron (NM_001376029, intron 2 of 19)	8506	NM_001376030	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
14266	chr1	143275371	143275700	+	0	NA	Intergenic	Intergenic	147057	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
222836	chr8	142607401	142607600	+	0	NA	Intergenic	AluJb|SINE|Alu	6979	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
161305	chr3	39387621	39388130	+	0	NA	intron (NM_001354798, intron 1 of 5)	intron (NM_001354798, intron 1 of 5)	4505	NM_017875	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
30034	chr10	73800001	73800300	+	0	NA	non-coding (NR_160292, exon 23 of 27)	non-coding (NR_160292, exon 23 of 27)	1249	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
201582	chr6	149336521	149337130	+	0	NA	intron (NM_015093, intron 2 of 8)	intron (NM_015093, intron 2 of 8)	18525	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
231228	chr9	129968771	129969130	+	0	NA	intron (NM_001363755, intron 4 of 15)	intron (NM_001363755, intron 4 of 15)	74239	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
196597	chr6	44225851	44226480	+	0	NA	5' UTR (NM_001078175, exon 2 of 14)	5' UTR (NM_001078175, exon 2 of 14)	2570	NM_001372327	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
178861	chr4	154491821	154492430	+	0	NA	promoter-TSS (NM_001358235)	promoter-TSS (NM_001358235)	-326	NM_001358235	54798		NM_017639	ENSG00000197410	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
167493	chr3	129176051	129177100	+	0	NA	intron (NM_001127196, intron 1 of 4)	intron (NM_001127196, intron 1 of 4)	7321	NM_001127196	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
109379	chr19	651151	651700	+	0	NA	intron (NM_001366018, intron 4 of 8)	CpG	11530	NM_001300812	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
219241	chr8	66961371	66961730	+	0	NA	exon (NM_001193502, exon 3 of 4)	exon (NM_001193502, exon 3 of 4)	1041	NM_001193502	100129654		NM_001193502	ENSG00000261787	TCF24	TCF-24|bHLHa25	transcription factor 24	protein-coding
239377	chrY	20968351	20968450	+	0	NA	Intergenic	HERVK22-int|LTR|ERVK	212292	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
148092	chr20	63310701	63311200	+	0	NA	intron (NM_020882, intron 11 of 35)	L1MB8|LINE|L1	17764	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
112425	chr19	6274071	6274430	+	0	NA	intron (NM_005934, intron 1 of 11)	intron (NM_005934, intron 1 of 11)	5725	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
220766	chr8	102406351	102407200	+	0	NA	intron (NM_001282873, intron 1 of 58)	intron (NM_001282873, intron 1 of 58)	-5564	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
194109	chr6	31951051	31951730	+	0	NA	TTS (NM_002904)	TTS (NM_002904)	5295	NM_001710	629		NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
189882	chr5	177319901	177320500	+	0	NA	Intergenic	MER74A|LTR|ERVL	-8302	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
102702	chr17	76143321	76144200	+	0	NA	3' UTR (NM_001330501, exon 18 of 18)	3' UTR (NM_001330501, exon 18 of 18)	-2515	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
128701	chr2	61580921	61581180	+	0	NA	Intergenic	AluSp|SINE|Alu	-42694	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
118754	chr19	38361221	38362880	+	0	NA	intron (NM_001330496, intron 16 of 27)	CpG	-12521	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
196411	chr6	43382471	43382630	+	0	NA	Intergenic	AluJb|SINE|Alu	-12903	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
118903	chr19	38717121	38717750	+	0	NA	intron (NM_004924, intron 10 of 20)	intron (NM_004924, intron 10 of 20)	27039	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
27252	chr10	29681251	29682830	+	0	NA	intron (NM_003174, intron 2 of 35)	intron (NM_003174, intron 2 of 35)	-47069	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
6310	chr1	27633801	27635080	+	0	NA	intron (NM_005248, intron 1 of 12)	CpG	745	NM_005248	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
115988	chr19	17082351	17082650	+	0	NA	intron (NM_004145, intron 1 of 39)	intron (NM_004145, intron 1 of 39)	6723	NM_004145	4650		NM_004145	ENSG00000099331	MYO9B	CELIAC4|MYR5	myosin IXB	protein-coding
225899	chr9	39806951	39807250	+	0	NA	TTS (NR_015363)	TTS (NR_015363)	3059	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
11588	chr1	91557371	91557530	+	0	NA	Intergenic	MIR|SINE|MIR	56342	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
210444	chr7	100103901	100104100	+	0	NA	intron (NM_004722, intron 6 of 14)	intron (NM_004722, intron 6 of 14)	2352	NM_001363671	9179		NM_004722	ENSG00000221838	AP4M1	CPSQ3|MU-4|MU-ARP2|SPG50	adaptor related protein complex 4 subunit mu 1	protein-coding
171408	chr3	196205121	196206230	+	0	NA	intron (NR_135617, intron 5 of 8)	AluSz6|SINE|Alu	5725	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
178605	chr4	152014071	152014700	+	0	NA	Intergenic	Intergenic	-86368	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
144877	chr20	36917571	36918130	+	0	NA	intron (NM_001363733, intron 7 of 15)	intron (NM_001363733, intron 7 of 15)	33858	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
68530	chr14	89112151	89112250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	287549	NM_001366535	123016		NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
98874	chr17	48541201	48542450	+	0	NA	TTS (NM_002145)	TTS (NM_002145)	-2526	NR_102279	100874362		NR_102279	ENSG00000230148	HOXB-AS1	HOXB3OS	HOXB cluster antisense RNA 1	ncRNA
40889	chr11	65124401	65124730	+	0	NA	non-coding (NR_037567, exon 2 of 4)	non-coding (NR_037567, exon 2 of 4)	2244	NR_037568	740		NM_004927	ENSG00000149792	MRPL49	C11orf4|L49mt|MRP-L49|NOF|NOF1|mL49	mitochondrial ribosomal protein L49	protein-coding
104559	chr17	81340521	81340980	+	0	NA	Intergenic	Intergenic	-10076	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
30817	chr10	85616021	85616100	+	0	NA	intron (NM_017551, intron 14 of 15)	MIR|SINE|MIR	38329	NR_038986	100507470		NR_038986	ENSG00000234942	GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
179394	chr4	183661451	183661750	+	0	NA	intron (NM_021942, intron 1 of 29)	AluY|SINE|Alu	2307	NM_021942	60684		NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S|LGMDR18	trafficking protein particle complex subunit 11	protein-coding
234557	chrX	19730501	19730700	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	-59601	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
118653	chr19	37309871	37310130	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-2837	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
4391	chr1	20903501	20903850	+	0	NA	intron (NM_001198801, intron 12 of 34)	intron (NM_001198801, intron 12 of 34)	84757	NR_031657	100302155		NR_031657	ENSG00000221808	MIR1256	MIRN1256|hsa-mir-1256	microRNA 1256	ncRNA
34934	chr11	438151	438450	+	0	NA	intron (NM_001347882, intron 1 of 21)	intron (NM_001347882, intron 1 of 21)	3711	NM_001347882	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
187223	chr5	140926351	140926750	+	0	NA	promoter-TSS (NM_031882)	promoter-TSS (NM_031882)	-167	NM_031882	56135		NM_018898	ENSG00000248383	PCDHAC1	PCDH-ALPHA-C1	protocadherin alpha subfamily C, 1	protein-coding
140379	chr2	233059621	233060720	+	0	NA	promoter-TSS (NM_005541).2	promoter-TSS (NM_005541).2	-172	NM_005541	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
222497	chr8	140463351	140465500	+	0	NA	Intergenic	CpG	-5846	NM_031466	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
43497	chr11	78464151	78464650	+	0	NA	intron (NM_024678, intron 11 of 13)	LTR12C|LTR|ERV1	-34564	NR_120564	101928865		NR_120564	ENSG00000251323	LINC02728	-	long intergenic non-protein coding RNA 2728	ncRNA
59906	chr13	30797371	30797530	+	0	NA	Intergenic	MIRb|SINE|MIR	-5756	NR_047012	100874158		NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
232253	chr9	134401551	134401900	+	0	NA	exon (NM_002957, exon 2 of 10)	exon (NM_002957, exon 2 of 10)	-4835	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
221564	chr8	125095671	125096030	+	0	NA	intron (NM_001349485, intron 1 of 6)	AluSq2|SINE|Alu	3990	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
178955	chr4	159117621	159118450	+	0	NA	intron (NM_001351724, intron 1 of 30)	MIR|SINE|MIR	-10770	NR_039963	100616303		NR_039963	ENSG00000283379	MIR3688-2	mir-3688-2	microRNA 3688-2	ncRNA
174015	chr4	26410721	26411000	+	0	NA	intron (NM_015874, intron 3 of 10)	intron (NM_015874, intron 3 of 10)	67720	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
11312	chr1	89311571	89312030	+	0	NA	Intergenic	LTR21B|LTR|ERV1	-21438	NR_077244	729930		NR_077244		LOC729930	-	intraflagellar transport associated protein pseudogene	pseudo
60579	chr13	41905551	41905960	+	0	NA	intron (NM_015058, intron 4 of 44)	L1MC4|LINE|L1	55330	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
175413	chr4	70904551	70904650	+	0	NA	intron (NM_173468, intron 1 of 5)	AluSx4|SINE|Alu	2231	NM_173468	92597		NM_173468	ENSG00000173542	MOB1B	MATS2|MOB4A|MOBKL1A	MOB kinase activator 1B	protein-coding
49777	chr12	31876521	31877180	+	0	NA	TTS (NR_135029)	TTS (NR_135029)	10353	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
27434	chr10	31755101	31755530	+	0	NA	Intergenic	Intergenic	153611	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
172884	chr4	3440821	3441080	+	0	NA	Intergenic	Intergenic	-1018	NM_001528	3083		NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
215524	chr7	158761121	158761450	+	0	NA	intron (NM_020728, intron 11 of 21)	intron (NM_020728, intron 11 of 21)	-56481	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
103363	chr17	78117121	78118300	+	0	NA	intron (NM_001375353, intron 16 of 19)	intron (NM_001375353, intron 16 of 19)	11045	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
111202	chr19	3470021	3470280	+	0	NA	TTS (NM_001245005)	TTS (NM_001245005)	10375	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
187347	chr5	141680821	141681200	+	0	NA	intron (NM_022481, intron 1 of 32)	intron (NM_022481, intron 1 of 32)	1220	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
197152	chr6	59550621	59551080	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1589404	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
45153	chr11	117202371	117202530	+	0	NA	promoter-TSS (NR_045215)	promoter-TSS (NR_045215)	-536	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
170236	chr3	184193051	184193600	+	0	NA	intron (NM_001351298, intron 19 of 20)	intron (NM_001351298, intron 19 of 20)	7250	NM_001351299	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
80915	chr16	3772351	3772450	+	0	NA	intron (NM_004380, intron 13 of 30)	MER5B|DNA|hAT-Charlie	-54876	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
144371	chr20	35092101	35093680	+	0	NA	promoter-TSS (NM_015638)	promoter-TSS (NM_015638)	-75	NM_199368	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
6465	chr1	28280601	28281200	+	0	NA	3' UTR (NM_031459, exon 10 of 10)	3' UTR (NM_031459, exon 10 of 10)	21382	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
130964	chr2	87536471	87536700	+	0	NA	Intergenic	Intergenic	66635	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
120087	chr19	42122861	42123850	+	0	NA	intron (NM_001247994, intron 1 of 13)	intron (NM_001247994, intron 1 of 13)	9091	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
156654	chr22	41636521	41637030	+	0	NA	intron (NM_001288976, intron 5 of 12)	intron (NM_001288976, intron 5 of 12)	15480	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
51082	chr12	49958971	49959330	+	0	NA	TTS (NM_000486)	TTS (NM_000486)	-2722	NM_001651	362		NM_001651	ENSG00000161798	AQP5	AQP-5|PPKB	aquaporin 5	protein-coding
184727	chr5	109468671	109469200	+	0	NA	Intergenic	Intergenic	-58961	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
229481	chr9	122126701	122127500	+	0	NA	Intergenic	CpG	-6933	NR_039690	100616312		NR_039690	ENSG00000266583	MIR4478	mir-4478	microRNA 4478	ncRNA
196742	chr6	45376071	45376430	+	0	NA	intron (NM_001350327, intron 1 of 9)	intron (NM_001350327, intron 1 of 9)	1268	NR_146635	8464		NM_003599	ENSG00000196284	SUPT3H	SPT3|SPT3L	SPT3 homolog, SAGA and STAGA complex component	protein-coding
27772	chr10	35352401	35352880	+	0	NA	intron (NM_001282852, intron 1 of 8)	L2c|LINE|L2	15766	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
115576	chr19	15840021	15840280	+	0	NA	Intergenic	MER41A|LTR|ERV1	11203	NR_015379	652995		NR_015379	ENSG00000214049	UCA1	CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36	urothelial cancer associated 1	ncRNA
217913	chr8	37903171	37903850	+	0	NA	Intergenic	Intergenic	-4013	NM_025151	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
75785	chr15	68805721	68806180	+	0	NA	non-coding (NR_026808, exon 1 of 1)	non-coding (NR_026808, exon 1 of 1)	1151	NR_026808	80035		NM_024970		ANP32A-IT1	C15orf28|HsT18971|NCRNA00321	ANP32A intronic transcript 1	ncRNA
6732	chr1	30655291	30656000	+	0	NA	Intergenic	Intergenic	-63127	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
220330	chr8	98946401	98946800	+	0	NA	intron (NM_053001, intron 1 of 3)	intron (NM_053001, intron 1 of 3)	2158	NM_001142462	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
55115	chr12	98523221	98523480	+	0	NA	intron (NM_001307975, intron 1 of 7)	AluSx|SINE|Alu	-7124	NR_027157	100128191		NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
187841	chr5	146966021	146966500	+	0	NA	intron (NM_001271900, intron 2 of 10)	intron (NM_001271900, intron 2 of 10)	-46754	NR_047115	100874361		NR_047115	ENSG00000249553	PPP2R2B-IT1	-	PPP2R2B intronic transcript 1	ncRNA
49257	chr12	19457171	19457530	+	0	NA	intron (NM_001267043, intron 1 of 8)	intron (NM_001267043, intron 1 of 8)	16751	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
203134	chr6	166941971	166942130	+	0	NA	intron (NM_003730, intron 5 of 8)	intron (NM_003730, intron 5 of 8)	14500	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
100551	chr17	62611051	62611980	+	0	NA	intron (NM_001375269, intron 20 of 20)	L1MC1|LINE|L1	-16155	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
210050	chr7	95324421	95324700	+	0	NA	promoter-TSS (NM_000446)	promoter-TSS (NM_000446)	-28	NM_000446	5444		NM_000446	ENSG00000005421	PON1	ESA|MVCD5|PON	paraoxonase 1	protein-coding
156904	chr22	42217151	42218500	+	0	NA	intron (NM_005650, intron 1 of 5)	intron (NM_005650, intron 1 of 5)	-51928	NR_036498	388906		NR_036498		OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
154845	chr22	37095151	37095330	+	0	NA	intron (NM_153609, intron 6 of 17)	MamGypLTR2c|LTR|Gypsy	8416	NM_153609	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
122206	chr19	48960871	48961300	+	0	NA	exon (NM_004324, exon 5 of 5)	exon (NM_004324, exon 5 of 5)	-4224	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
154370	chr22	33710751	33710850	+	0	NA	intron (NM_133642, intron 2 of 14)	intron (NM_133642, intron 2 of 14)	-5880	NR_145833	109616998		NR_145833	ENSG00000253007	SNORA50B	-	small nucleolar RNA, H/ACA box 50B	snoRNA
217282	chr8	27355971	27356430	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	30636	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
161667	chr3	43340251	43340980	+	0	NA	intron (NM_017719, intron 5 of 6)	intron (NM_017719, intron 5 of 6)	11347	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
200262	chr6	132511051	132511750	+	0	NA	intron (NM_001326579, intron 1 of 9)	L2a|LINE|L2	1383	NM_001326578	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
10553	chr1	67134701	67135020	+	0	NA	intron (NR_075077, intron 1 of 9)	CpG	110	NM_001276351	400757		NM_001013674	ENSG00000203963	C1orf141	-	chromosome 1 open reading frame 141	protein-coding
163856	chr3	52487871	52488280	+	0	NA	exon (NM_007184, exon 16 of 21)	exon (NM_007184, exon 16 of 21)	-7263	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
74627	chr15	60704121	60704850	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	22916	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
84015	chr16	29464351	29464800	+	0	NA	TTS (NR_002556)	TTS (NR_002556)	3003	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
159550	chr3	14650221	14650600	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1336	NR_135523	51244		NM_016474	ENSG00000154781	CCDC174	C3orf19|HSPC212|IHPM|IHPMR|ctr1	coiled-coil domain containing 174	protein-coding
88371	chr16	84593701	84595950	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	23253	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
92780	chr17	15704251	15704750	+	0	NA	intron (NM_001369437, intron 3 of 3)	CpG	4748	NM_001369436	57335		NM_020652	ENSG00000187607	ZNF286A	ZNF286	zinc finger protein 286A	protein-coding
156753	chr22	41835451	41835980	+	0	NA	intron (NR_103834, intron 1 of 21)	AluJr|SINE|Alu	-1050	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
93574	chr17	19105871	19106030	+	0	NA	Intergenic	AluSq|SINE|Alu	6686	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
62350	chr13	99198321	99198730	+	0	NA	intron (NR_036532, intron 1 of 1)	Charlie1a|DNA|hAT-Charlie	2230	NR_036532	100289373		NR_036531	ENSG00000228889	UBAC2-AS1	-	UBAC2 antisense RNA 1	ncRNA
211832	chr7	108468671	108469230	+	0	NA	Intergenic	AluSp|SINE|Alu	-12230	NM_001371122	4897		NM_005010	ENSG00000091129	NRCAM	NEDNMS	neuronal cell adhesion molecule	protein-coding
97776	chr17	44569501	44569700	+	0	NA	Intergenic	MER70A|LTR|ERVL	12116	NM_001466	2535		NM_001466	ENSG00000180340	FZD2	Fz2|OMOD2|fz-2|fzE2|hFz2	frizzled class receptor 2	protein-coding
63830	chr14	21494451	21494750	+	0	NA	intron (NM_001303523, intron 6 of 7)	AluY|SINE|Alu	16740	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
227711	chr9	93036071	93036780	+	0	NA	TTS (NM_001083536)	TTS (NM_001083536)	-21481	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
190101	chr5	177873121	177873480	+	0	NA	Intergenic	MIRb|SINE|MIR	-1961	NR_003615	728554		NR_003615	ENSG00000291113	LOC728554	-	THO complex 3 pseudogene	pseudo
198660	chr6	107825801	107826250	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1712	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
191519	chr6	11356451	11356750	+	0	NA	intron (NR_073131, intron 1 of 9)	MER5A|DNA|hAT-Charlie	25748	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
85896	chr16	57066171	57066730	+	0	NA	intron (NM_001384952, intron 33 of 48)	intron (NM_001384952, intron 33 of 48)	-26133	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
157143	chr22	42851471	42851630	+	0	NA	intron (NM_001142293, intron 1 of 14)	intron (NM_001142293, intron 1 of 14)	5723	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
88902	chr16	87777321	87778180	+	0	NA	intron (NR_120309, intron 2 of 3)	intron (NR_120309, intron 2 of 3)	1398	NR_120309	102724467		NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA
77357	chr15	82682121	82682580	+	0	NA	intron (NM_001278511, intron 3 of 24)	AluSz|SINE|Alu	-19675	NM_001348441	8120		NM_004644	ENSG00000103723	AP3B2	DEE48|EIEE48|NAPTB	adaptor related protein complex 3 subunit beta 2	protein-coding
78496	chr15	92923551	92924100	+	0	NA	intron (NM_001042572, intron 2 of 12)	AluSc8|SINE|Alu	19426	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
42734	chr11	72696651	72696950	+	0	NA	intron (NR_161388, intron 19 of 29)	intron (NR_161388, intron 19 of 29)	-3674	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
107502	chr18	47918121	47918930	+	0	NA	intron (NM_001135937, intron 1 of 9)	HAL1|LINE|L1	12134	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
219823	chr8	81682721	81683330	+	0	NA	intron (NM_001144879, intron 1 of 7)	L2b|LINE|L2	3300	NM_005536	3612		NM_005536	ENSG00000133731	IMPA1	IMP|IMPA|MRT59	inositol monophosphatase 1	protein-coding
89950	chr16	89759101	89759300	+	0	NA	intron (NM_001286167, intron 29 of 42)	AluY|SINE|Alu	37663	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
168769	chr3	151274071	151274230	+	0	NA	intron (NM_014879, intron 1 of 2)	Tigger13a|DNA|TcMar-Tigger	4392	NM_014879	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
220284	chr8	97980101	97980500	+	0	NA	intron (NM_001317748, intron 6 of 17)	intron (NM_001317748, intron 6 of 17)	61917	NR_002581	26775		NR_002581	ENSG00000207067	SNORA72	RNU72|U72	small nucleolar RNA, H/ACA box 72	snoRNA
149551	chr21	33185601	33186450	+	0	NA	Intergenic	L2a|LINE|L2	-15789	NR_024102	728409		NR_024102		LINC01548	C21orf54	long intergenic non-protein coding RNA 1548	ncRNA
198589	chr6	107670721	107671130	+	0	NA	Intergenic	(CTGCTT)n|Simple_repeat|Simple_repeat	61225	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
178367	chr4	146342721	146342980	+	0	NA	intron (NM_001317816, intron 4 of 10)	intron (NM_001317816, intron 4 of 10)	-65733	NR_107003	102465837		NR_107003	ENSG00000278438	MIR7849	hsa-mir-7849	microRNA 7849	ncRNA
168835	chr3	152254121	152254480	+	0	NA	intron (NM_001376839, intron 2 of 10)	intron (NM_001376839, intron 2 of 10)	10668	NM_001376819	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
151258	chr21	45324171	45324730	+	0	NA	Intergenic	Intergenic	17540	NR_103811	388830		NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
134473	chr2	143250571	143250930	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	121331	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
127185	chr2	38394821	38395080	+	0	NA	Intergenic	L1PA15|LINE|L1	-16366	NM_001330462	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
79362	chr16	630021	630450	+	0	NA	promoter-TSS (NM_053284)	promoter-TSS (NM_053284)	-750	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
135075	chr2	156495951	156496280	+	0	NA	exon (NM_001083112, exon 3 of 17)	exon (NM_001083112, exon 3 of 17)	59736	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
52	chr1	262271	262430	+	0	NA	Intergenic	Intergenic	-55753	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
59139	chr13	21440901	21441300	+	0	NA	intron (NM_153251, intron 1 of 11)	L1M7|LINE|L1	18203	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
140346	chr2	232611351	232611980	+	0	NA	intron (NM_001243252, intron 1 of 3)	intron (NM_001243252, intron 1 of 3)	5608	NM_001243252	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
67142	chr14	68687501	68687700	+	0	NA	Intergenic	L2b|LINE|L2	-58813	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
66005	chr14	58243671	58245320	+	0	NA	promoter-TSS (NM_152132)	promoter-TSS (NM_152132)	-310	NR_038123	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
175295	chr4	67702221	67702480	+	0	NA	intron (NR_015439, intron 1 of 1)	LTR54B|LTR|ERV1	1072	NR_015439	550112		NR_015439	ENSG00000248049	UBA6-DT	UBA6-AS1	UBA6 divergent transcript	ncRNA
12202	chr1	100388521	100388780	+	0	NA	intron (NM_001319210, intron 3 of 16)	AluJr|SINE|Alu	36144	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
155682	chr22	39065971	39066730	+	0	NA	Intergenic	LTR7|LTR|ERV1	-10655	NM_001349437	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
114421	chr19	12670971	12671130	+	0	NA	intron (NR_029375, intron 7 of 10)	AluSx1|SINE|Alu	1297	NM_032332	84292		NM_032332	ENSG00000123154	WDR83	MORG1	WD repeat domain 83	protein-coding
133786	chr2	127743651	127744000	+	0	NA	intron (NM_001006623, intron 7 of 7)	intron (NM_001006623, intron 7 of 7)	42328	NM_032740	84826		NM_032740	ENSG00000173349	SFT2D3	-	SFT2 domain containing 3	protein-coding
185328	chr5	126795951	126796450	+	0	NA	intron (NR_134488, intron 1 of 11)	AluSp|SINE|Alu	19064	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
74974	chr15	63843871	63844230	+	0	NA	Intergenic	Intergenic	-10102	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
47591	chr12	4828351	4828730	+	0	NA	intron (NM_002235, intron 1 of 1)	intron (NM_002235, intron 1 of 1)	19364	NM_002235	3742		NM_002235	ENSG00000151079	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel subfamily A member 6	protein-coding
832	chr1	1577301	1577880	+	0	NA	Intergenic	MER52A|LTR|ERV1	-2727	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
186553	chr5	138461401	138461630	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-3964	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
189750	chr5	176612651	176612950	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-2644	NM_052899	114787		NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
81359	chr16	4838571	4838930	+	0	NA	intron (NR_136700, intron 3 of 14)	AluY|SINE|Alu	8538	NM_032569	84656		NM_032569	ENSG00000140632	GLYR1	BM045|HIBDL|N-PAC|NP60|NPAC|hNDF	glyoxylate reductase 1 homolog	protein-coding
171064	chr3	195425851	195426300	+	0	NA	intron (NM_012287, intron 1 of 22)	L2b|LINE|L2	16945	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
85351	chr16	50205221	50205780	+	0	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	52194	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
117312	chr19	19503671	19504250	+	0	NA	intron (NM_001384516, intron 12 of 12)	AluJb|SINE|Alu	11588	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
224515	chr9	19107601	19108000	+	0	NA	Intergenic	AluSz|SINE|Alu	-4896	NM_001270890	54801		NM_017645	ENSG00000147874	HAUS6	Dgt6|FAM29A	HAUS augmin like complex subunit 6	protein-coding
157392	chr22	44736971	44737330	+	0	NA	exon (NM_001017529, exon 8 of 8)	exon (NM_001017529, exon 8 of 8)	-15408	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
41840	chr11	67116171	67116730	+	0	NA	intron (NR_160735, intron 1 of 1)	AluSx|SINE|Alu	1898	NR_160735	107984341		NR_160735		LOC107984341	-	uncharacterized LOC107984341	ncRNA
23930	chr1	235091751	235092050	+	0	NA	Intergenic	AluJr|SINE|Alu	-22082	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
167215	chr3	128432701	128433280	+	0	NA	Intergenic	CpG	-30604	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
14480	chr1	144523251	144524650	+	0	NA	Intergenic	U1|snRNA|snRNA	27993	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
199272	chr6	111863651	111864380	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	9056	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
152347	chr22	20434821	20435330	+	0	NA	intron (NM_182895, intron 1 of 10)	L2a|LINE|L2	2750	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
47262	chr12	1528951	1529480	+	0	NA	non-coding (NR_160736, exon 2 of 2)	non-coding (NR_160736, exon 2 of 2)	2977	NR_160736	107984507		NR_160736		LOC107984507	-	uncharacterized LOC107984507	ncRNA
80727	chr16	3104871	3105030	+	0	NA	Intergenic	Intergenic	-5656	NM_001365273	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
46799	chr11	130223501	130223900	+	0	NA	Intergenic	L2c|LINE|L2	63918	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
144908	chr20	36949251	36950100	+	0	NA	intron (NM_001363733, intron 1 of 15)	AluSc5|SINE|Alu	2033	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
152223	chr22	20143971	20144130	+	0	NA	intron (NM_001185024, intron 10 of 10)	intron (NM_001185024, intron 10 of 10)	7005	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
109346	chr19	615021	615280	+	0	NA	intron (NM_001194, intron 7 of 7)	intron (NM_001194, intron 7 of 7)	18387	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
172011	chr4	965371	965850	+	0	NA	intron (NM_001347, intron 13 of 22)	intron (NM_001347, intron 13 of 22)	7959	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
70074	chr14	100152301	100152700	+	0	NA	intron (NM_206918, intron 1 of 2)	MLT2B3|LTR|ERVL	7145	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
198948	chr6	110781401	110781800	+	0	NA	intron (NM_001300963, intron 1 of 13)	AluJb|SINE|Alu	-33021	NM_001287215	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
28640	chr10	59819451	59819550	+	0	NA	intron (NM_005436, intron 3 of 8)	intron (NM_005436, intron 3 of 8)	-66045	NM_001304732	100507027		NM_001304731	ENSG00000227877	MRLN	LINC00948|Linc-RAM|M1|MLN|MUSER1	myoregulin	protein-coding
87294	chr16	70065501	70067030	+	0	NA	promoter-TSS (NR_003610)	promoter-TSS (NR_003610)	-317	NR_003610	283970		NM_199134	ENSG00000196696	PDXDC2P-NPIPB14P	-	PDXDC2P-NPIPB14P readthrough, transcribed pseudogene	pseudo
203616	chr7	949001	949400	+	0	NA	intron (NM_001284308, intron 1 of 10)	intron (NM_001284308, intron 1 of 10)	-3384	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
19884	chr1	183635121	183637000	+	0	NA	promoter-TSS (NM_001270439)	promoter-TSS (NM_001270439)	-49	NM_001297669	23179		NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
236170	chrX	65406451	65406750	+	0	NA	Intergenic	(CGGGGCTGGG)n|Simple_repeat|Simple_repeat	-82135	NM_001010888	340554		NM_001010888	ENSG00000102053	ZC3H12B	CXorf32|MCPIP2	zinc finger CCCH-type containing 12B	protein-coding
52374	chr12	55704351	55704850	+	0	NA	intron (NM_001367993, intron 2 of 25)	MIRb|SINE|MIR	3304	NM_001374465	3679		NM_002206	ENSG00000135424	ITGA7	-	integrin subunit alpha 7	protein-coding
103110	chr17	77364051	77364850	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	-8887	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
148176	chr20	63539771	63539930	+	0	NA	TTS (NM_080823)	TTS (NM_080823)	-2474	NM_005975	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
48173	chr12	7971301	7971800	+	0	NA	Intergenic	Intergenic	-35363	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
144658	chr20	36138551	36138950	+	0	NA	intron (NM_001258330, intron 3 of 20)	MIR|SINE|MIR	-15990	NM_012156	2036		NM_012156	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1 like 1	protein-coding
124883	chr2	8329521	8330130	+	0	NA	Intergenic	Intergenic	-1406	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
136676	chr2	181077101	181077500	+	0	NA	Intergenic	Intergenic	-46537	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
120314	chr19	43501671	43501900	+	0	NA	exon (NM_198850, exon 4 of 16)	exon (NM_198850, exon 4 of 16)	3048	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
160130	chr3	20045301	20045850	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	5129	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
154527	chr22	36139851	36140150	+	0	NA	TTS (NM_014349)	TTS (NM_014349)	20755	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
184358	chr5	97008401	97008850	+	0	NA	intron (NM_175920, intron 11 of 17)	AluJo|SINE|Alu	50192	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
125404	chr2	11688221	11688740	+	0	NA	intron (NM_001349207, intron 1 of 20)	intron (NM_001349207, intron 1 of 20)	10936	NM_001349208	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
180990	chr5	35807421	35808080	+	0	NA	intron (NM_024867, intron 36 of 36)	intron (NM_024867, intron 36 of 36)	-49141	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
115451	chr19	15335571	15336350	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3421	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
196405	chr6	43362051	43362150	+	0	NA	intron (NM_014345, intron 2 of 9)	AluJo|SINE|Alu	7547	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
47802	chr12	6578271	6578630	+	0	NA	exon (NM_001363606, exon 35 of 40)	exon (NM_001363606, exon 35 of 40)	3159	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
50084	chr12	44834501	44834900	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	40961	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
11043	chr1	84991051	84991150	+	0	NA	intron (NM_001330647, intron 1 of 14)	intron (NM_001330647, intron 1 of 14)	6013	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
5224	chr1	24991071	24991700	+	0	NA	Intergenic	L2c|LINE|L2	-26375	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
100476	chr17	61456471	61456630	+	0	NA	promoter-TSS (NM_018488)	promoter-TSS (NM_018488)	62	NM_018488	9496		NM_018488	ENSG00000121075	TBX4	ICPPS|PAPPAS|SPS	T-box transcription factor 4	protein-coding
58755	chr12	132620701	132621830	+	0	NA	exon (NM_001282164, exon 8 of 11)	exon (NM_001282164, exon 8 of 11)	2489	NM_170682	22953		NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	purinergic receptor P2X 2	protein-coding
178611	chr4	152085701	152085900	+	0	NA	Intergenic	Intergenic	-14953	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
41910	chr11	67279071	67279600	+	0	NA	intron (NM_001619, intron 3 of 20)	intron (NM_001619, intron 3 of 20)	-9968	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
163952	chr3	52894701	52894900	+	0	NA	intron (NM_001198974, intron 1 of 9)	intron (NM_001198974, intron 1 of 9)	2748	NM_198563	375346		NM_198563	ENSG00000213533	STIMATE	TMEM110	STIM activating enhancer	protein-coding
237548	chrX	120497721	120498360	+	0	NA	Intergenic	AluSx|SINE|Alu	-28691	NM_013995	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
142918	chr20	18286651	18286950	+	0	NA	Intergenic	Intergenic	-1428	NM_001283006	7692		NM_003434	ENSG00000125846	ZNF133	ZNF150|pHZ-13|pHZ-66	zinc finger protein 133	protein-coding
14281	chr1	143727971	143728900	+	0	NA	TTS (NR_004400).5	TTS (NR_004400).5	1135	NR_004427	26870		NR_004427	ENSG00000207005	RNU1-2	RNU1C1|RNU1C2|U1C1|U1C21	RNA, U1 small nuclear 2	snRNA
162364	chr3	47848321	47848850	+	0	NA	promoter-TSS (NR_031595)	promoter-TSS (NR_031595)	-970	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
35584	chr11	1706521	1707030	+	0	NA	Intergenic	LTR28B|LTR|ERV1	9580	NM_001012416	440023		NM_001012416	ENSG00000205864	KRTAP5-6	KRTAP5.6	keratin associated protein 5-6	protein-coding
174334	chr4	38681851	38682230	+	0	NA	intron (NM_016531, intron 2 of 5)	intron (NM_016531, intron 2 of 5)	-17412	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
8751	chr1	42706401	42706880	+	0	NA	Intergenic	L1MA4A|LINE|L1	23504	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
61468	chr13	52236121	52236480	+	0	NA	Intergenic	L1PA16|LINE|L1	-41833	NR_002816	100887750		NR_002816	ENSG00000291010	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
174001	chr4	26329871	26330880	+	0	NA	intron (NM_001363577, intron 1 of 10)	intron (NM_001363577, intron 1 of 10)	9147	NM_001363577	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
48713	chr12	10694851	10694950	+	0	NA	Intergenic	L1MD|LINE|L1	-20848	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
72384	chr15	31373701	31374600	+	0	NA	3' UTR (NM_015995, exon 2 of 2)	3' UTR (NM_015995, exon 2 of 2)	47315	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
163602	chr3	51986171	51986400	+	0	NA	exon (NM_001198898, exon 5 of 14)	exon (NM_001198898, exon 5 of 14)	2750	NM_000666	95		NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
171681	chr3	197739471	197739850	+	0	NA	intron (NM_001145642, intron 1 of 20)	AluY|SINE|Alu	-2734	NM_001346873	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
61100	chr13	48429971	48430130	+	0	NA	intron (NM_005767, intron 1 of 6)	intron (NM_005767, intron 1 of 6)	-3142	NM_001377317	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
156248	chr22	40401401	40402680	+	0	NA	intron (NR_146414, intron 3 of 21)	L2b|LINE|L2	31446	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
224386	chr9	9442101	9442260	+	0	NA	intron (NM_002839, intron 8 of 45)	7SLRNA|srpRNA|srpRNA	-357212	NR_135135	105375972		NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
222505	chr8	140510881	140512930	+	0	NA	promoter-TSS (NR_040712)	promoter-TSS (NR_040712)	-91	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
54984	chr12	96333801	96334200	+	0	NA	intron (NM_002595, intron 2 of 16)	MamTip2|DNA|hAT-Tip100	66439	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
15736	chr1	151069121	151069380	+	0	NA	3' UTR (NM_006818, exon 2 of 2)	3' UTR (NM_006818, exon 2 of 2)	-1511	NM_001323908	126626		NM_144618	ENSG00000143458	GABPB2	GABPB-2	GA binding protein transcription factor subunit beta 2	protein-coding
123153	chr19	52192851	52193450	+	0	NA	intron (NR_033500, intron 1 of 13)	MIR|SINE|MIR	3098	NM_014225	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
149476	chr21	31872551	31873230	+	0	NA	promoter-TSS (NM_014586)	promoter-TSS (NM_014586)	-130	NM_014586	30811		NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
121785	chr19	47782751	47783250	+	0	NA	intron (NM_003009, intron 5 of 5)	intron (NM_003009, intron 5 of 5)	4297	NM_003009	6415		NM_003009	ENSG00000178980	SELENOW	SEPW1|selW	selenoprotein W	protein-coding
12862	chr1	110089771	110090130	+	0	NA	intron (NR_126382, intron 1 of 3)	intron (NR_126382, intron 1 of 3)	7262	NR_126382	104355139		NR_126382	ENSG00000258673	LINC01397	-	long intergenic non-protein coding RNA 1397	ncRNA
161311	chr3	39404651	39405150	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-1820	NM_002295	3921		NM_002295	ENSG00000168028	RPSA	37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40|uS2	ribosomal protein SA	protein-coding
215275	chr7	157016171	157016830	+	0	NA	TTS (NR_038835)	TTS (NR_038835)	5643	NR_038835	645249		NR_038835	ENSG00000243479	MNX1-AS1	CCAT5|MAYA	MNX1 antisense RNA 1 (head to head)	ncRNA
81217	chr16	4512701	4513750	+	0	NA	intron (NM_001199054, intron 4 of 5)	intron (NM_001199054, intron 4 of 5)	17367	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
155557	chr22	38724071	38724430	+	0	NA	intron (NM_004286, intron 5 of 11)	intron (NM_004286, intron 5 of 11)	18306	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
181543	chr5	43078571	43078830	+	0	NA	intron (NR_102752, intron 2 of 2)	AluYe5|SINE|Alu	-11261	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
99033	chr17	48869621	48869880	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-23037	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
174280	chr4	38310121	38311280	+	0	NA	Intergenic	Intergenic	-56214	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
201878	chr6	150813301	150814180	+	0	NA	intron (NM_001329799, intron 10 of 15)	intron (NM_001329799, intron 10 of 15)	-51939	NR_146719	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
20197	chr1	193107401	193107600	+	0	NA	Intergenic	AluSx|SINE|Alu	-1386	NM_016066	51022		NM_016066	ENSG00000023572	GLRX2	CGI-133|GRX2	glutaredoxin 2	protein-coding
189578	chr5	175515971	175516330	+	0	NA	intron (NM_001322978, intron 7 of 10)	MER1A|DNA|hAT-Charlie	37590	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
64829	chr14	35117001	35117200	+	0	NA	intron (NM_017917, intron 1 of 12)	L2b|LINE|L2	5442	NM_001305155	55012		NM_017917	ENSG00000092020	PPP2R3C	C14orf10|G4-1|G5pr|GDRM|MEGD|SPGF36	protein phosphatase 2 regulatory subunit B''gamma	protein-coding
96959	chr17	42195271	42195430	+	0	NA	promoter-TSS (NM_001142623)	promoter-TSS (NM_001142623)	-856	NM_032484	84514		NM_032484	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
45335	chr11	118221421	118221800	+	0	NA	intron (NM_001098526, intron 1 of 9)	MER1B|DNA|hAT-Charlie	3401	NM_001098526	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
145628	chr20	44745751	44746600	+	0	NA	promoter-TSS (NR_132377)	promoter-TSS (NR_132377)	52	NR_132377	106144538		NR_132377		KCNK15-AS1	-	KCNK15 and WISP2 antisense RNA 1	ncRNA
211936	chr7	112467221	112468050	+	0	NA	intron (NR_120333, intron 7 of 11)	intron (NR_120333, intron 7 of 11)	-13218	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
168381	chr3	141929471	141930100	+	0	NA	Intergenic	Intergenic	53142	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
166899	chr3	124726601	124726800	+	0	NA	TTS (NM_001322993)	TTS (NM_001322993)	-3666	NR_033437	7372		NM_000373	ENSG00000114491	UMPS	OPRT	uridine monophosphate synthetase	protein-coding
128715	chr2	61761251	61761550	+	0	NA	Intergenic	AluSc8|SINE|Alu	92660	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
209843	chr7	90118721	90119480	+	0	NA	promoter-TSS (NR_003551)	promoter-TSS (NR_003551)	-300	NR_003551	442523		NR_003551	ENSG00000291119	DPY19L2P4	-	DPY19L2 pseudogene 4	pseudo
180646	chr5	17517671	17517830	+	0	NA	Intergenic	Intergenic	-25674	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
104441	chr17	81086421	81086680	+	0	NA	exon (NM_001144888, exon 6 of 14)	exon (NM_001144888, exon 6 of 14)	3011	NM_001385156	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
666	chr1	1368501	1369050	+	0	NA	Intergenic	AluSx|SINE|Alu	-5234	NM_001282582	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
221111	chr8	118098151	118098450	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	13526	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
37429	chr11	17354471	17355050	+	0	NA	intron (NM_001202439, intron 1 of 4)	intron (NM_001202439, intron 1 of 4)	2960	NM_001202439	374383		NM_001009913	ENSG00000188211	NCR3LG1	B7-H6|B7H6|DKFZp686O24166	natural killer cell cytotoxicity receptor 3 ligand 1	protein-coding
97116	chr17	42522151	42522450	+	0	NA	3' UTR (NM_001378542, exon 21 of 21)	3' UTR (NM_001378542, exon 21 of 21)	8112	NR_049808	100847046		NR_049808	ENSG00000283929	MIR5010	mir-5010	microRNA 5010	ncRNA
185757	chr5	132238171	132238630	+	0	NA	Intergenic	Intergenic	-10547	NM_001365681	8974		NM_004199	ENSG00000072682	P4HA2	MYP25|lncRNA-PE	prolyl 4-hydroxylase subunit alpha 2	protein-coding
151743	chr22	17783101	17783730	+	0	NA	Intergenic	Intergenic	6125	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
113139	chr19	8328501	8329000	+	0	NA	intron (NM_198471, intron 7 of 10)	L2|LINE|L2	7254	NM_001031	6234		NM_001031	ENSG00000233927	RPS28	DBA15|S28|eS28	ribosomal protein S28	protein-coding
220509	chr8	100666201	100667200	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-17035	NM_152628	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
24929	chr10	1117921	1118650	+	0	NA	intron (NM_014023, intron 11 of 13)	intron (NM_014023, intron 11 of 13)	-41483	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
33407	chr10	118544021	118544300	+	0	NA	Intergenic	Intergenic	51488	NM_004248	2834		NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
198204	chr6	97215201	97215500	+	0	NA	intron (NM_001350600, intron 13 of 23)	intron (NM_001350600, intron 13 of 23)	67866	NM_198468	253714		NM_198468	ENSG00000146263	MMS22L	C6orf167|dJ39B17.2	MMS22 like, DNA repair protein	protein-coding
77219	chr15	80999601	81000200	+	0	NA	Intergenic	MIRc|SINE|MIR	-1023	NM_022566	59274		NM_022566	ENSG00000140406	TLNRD1	MESDC1	talin rod domain containing 1	protein-coding
192060	chr6	16599751	16600330	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	160144	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
159778	chr3	16311151	16311250	+	0	NA	intron (NM_001352982, intron 10 of 10)	intron (NM_001352982, intron 10 of 10)	45988	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
164186	chr3	56814751	56815280	+	0	NA	intron (NM_001289698, intron 2 of 10)	AluJo|SINE|Alu	-13066	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
202182	chr6	156028551	156028850	+	0	NA	Intergenic	Intergenic	81903	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
228181	chr9	97502621	97502900	+	0	NA	intron (NM_003275, intron 1 of 9)	CpG	1094	NM_003275	7111		NM_003275	ENSG00000136842	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
110967	chr19	2949151	2949250	+	0	NA	Intergenic	Intergenic	-4229	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
237989	chrX	134521071	134521230	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	19112	NR_030587	100126302		NR_030587	ENSG00000216001	MIR450B	MIRN450B|mir-450b	microRNA 450b	ncRNA
133422	chr2	118883801	118884000	+	0	NA	Intergenic	LTR12B|LTR|ERV1	-36252	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
165973	chr3	108065351	108065850	+	0	NA	intron (NM_198793, intron 3 of 8)	AluSx4|SINE|Alu	25431	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
107987	chr18	58657621	58658800	+	0	NA	Intergenic	Intergenic	-13255	NM_173844	10892		NM_006785	ENSG00000172175	MALT1	IMD12|MLT|MLT1|PCASP1	MALT1 paracaspase	protein-coding
181270	chr5	39266971	39267130	+	0	NA	intron (NM_001243093, intron 1 of 18)	MIRb|SINE|MIR	3599	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
144244	chr20	34500471	34500830	+	0	NA	intron (NM_031483, intron 23 of 24)	L1M2|LINE|L1	-14952	NR_168136	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
68610	chr14	89617701	89618400	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	1115	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
80845	chr16	3497951	3498700	+	0	NA	Intergenic	MLT2B2|LTR|ERVL	-1673	NM_001353382	646174		NM_001080524	ENSG00000215131	C16orf90	-	chromosome 16 open reading frame 90	protein-coding
71072	chr14	104844151	104844450	+	0	NA	Intergenic	Intergenic	-20968	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
82109	chr16	14631401	14631630	+	0	NA	Intergenic	AluSz|SINE|Alu	-1255	NM_001242992	5073		NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding
119326	chr19	39935551	39936380	+	0	NA	Intergenic	Intergenic	-1339	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
27112	chr10	27569301	27569450	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	65071	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
151644	chr22	16609771	16610130	+	0	NA	intron (NR_001591, intron 1 of 8)	CpG	8039	NR_001591	387590		NR_001591	ENSG00000290418	TPTEP1	psiTPTE22	TPTE pseudogene 1	pseudo
39387	chr11	60193671	60193980	+	0	NA	Intergenic	Intergenic	-9159	NM_152852	64231		NM_022349	ENSG00000110077	MS4A6A	4SPAN3|4SPAN3.2|CD20L3|CDA01|MS4A6|MST090|MSTP090	membrane spanning 4-domains A6A	protein-coding
20029	chr1	185311451	185312450	+	0	NA	intron (NM_006469, intron 1 of 14)	L2c|LINE|L2	5293	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
49319	chr12	21655451	21656080	+	0	NA	intron (NM_001315537, intron 1 of 7)	intron (NM_001315537, intron 1 of 7)	2029	NM_001174097	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
191752	chr6	13859921	13860930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-45865	NM_001031713	63933		NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
4854	chr1	23697351	23697650	+	0	NA	TTS (NM_000975)	TTS (NM_000975)	5694	NM_000975	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
127269	chr2	38713321	38713780	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	37811	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
124216	chr19	57171701	57172780	+	0	NA	Intergenic	CpG	-4755	NM_001012729	503835		NM_001012729	ENSG00000258873	DUXA	-	double homeobox A	protein-coding
87743	chr16	75222821	75223180	+	0	NA	exon (NM_001906, exon 3 of 7)	exon (NM_001906, exon 3 of 7)	-3383	NR_109777	100506281		NR_109777	ENSG00000290455	LOC100506281	-	uncharacterized LOC100506281	ncRNA
125172	chr2	10057221	10057730	+	0	NA	3' UTR (NM_001037160, exon 3 of 3)	3' UTR (NM_001037160, exon 3 of 3)	13230	NM_001177718	8462		NM_003597	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	KLF transcription factor 11	protein-coding
137082	chr2	190918871	190919300	+	0	NA	intron (NM_014905, intron 7 of 17)	Tigger1|DNA|TcMar-Tigger	38264	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
213408	chr7	137903451	137904230	+	0	NA	intron (NM_001318246, intron 7 of 11)	intron (NM_001318246, intron 7 of 11)	29148	NM_001318246	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
38098	chr11	35213371	35214150	+	0	NA	intron (NM_001202555, intron 6 of 9)	intron (NM_001202555, intron 6 of 9)	50810	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
55614	chr12	106956701	106957800	+	0	NA	intron (NM_001319662, intron 1 of 2)	intron (NM_001319662, intron 1 of 2)	465	NM_001319662	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
184671	chr5	108002921	108003440	+	0	NA	intron (NM_001163315, intron 7 of 8)	intron (NM_001163315, intron 7 of 8)	-332243	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
130250	chr2	84849371	84850150	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	31324	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
157675	chr22	46286971	46287130	+	0	NA	intron (NM_017931, intron 9 of 13)	intron (NM_017931, intron 9 of 13)	9610	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
55775	chr12	108578671	108579430	+	0	NA	Intergenic	(CACCAC)n|Simple_repeat|Simple_repeat	16454	NM_213595	23479		NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
89626	chr16	89319171	89319330	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-1202	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
222164	chr8	132777071	132777230	+	0	NA	intron (NR_156424, intron 1 of 18)	intron (NR_156424, intron 1 of 18)	-1151	NM_001382397	137835		NM_144649	ENSG00000165071	TMEM71	-	transmembrane protein 71	protein-coding
138757	chr2	215793751	215793850	+	0	NA	intron (NR_037195, intron 1 of 9)	intron (NR_037195, intron 1 of 9)	49736	NR_037195	646324		NR_037195	ENSG00000235770	LINC00607	-	long intergenic non-protein coding RNA 607	ncRNA
208759	chr7	73536621	73537030	+	0	NA	non-coding (NR_036682, exon 6 of 6)	non-coding (NR_036682, exon 6 of 6)	-14532	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
83782	chr16	28744971	28745330	+	0	NA	Intergenic	AluSp|SINE|Alu	-7285	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
167201	chr3	128318071	128318430	+	0	NA	intron (NM_021937, intron 4 of 6)	intron (NM_021937, intron 4 of 6)	-145344	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
170303	chr3	184335401	184337350	+	0	NA	intron (NM_001366134, intron 1 of 6)	CpG	446	NM_001171093	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
180679	chr5	18772351	18772700	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	965251	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
38964	chr11	47544321	47544580	+	0	NA	intron (NM_001376458, intron 1 of 13)	intron (NM_001376458, intron 1 of 13)	8682	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
69907	chr14	99505551	99506530	+	0	NA	3' UTR (NM_001144995, exon 6 of 6)	3' UTR (NM_001144995, exon 6 of 6)	24631	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
163420	chr3	50555951	50556050	+	0	NA	Intergenic	Intergenic	11747	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
45213	chr11	117837551	117838050	+	0	NA	3' UTR (NM_022003, exon 8 of 8)	3' UTR (NM_022003, exon 8 of 8)	-9711	NM_021603	486		NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
147647	chr20	62214101	62214500	+	0	NA	TTS (NM_007232)	TTS (NM_007232)	5978	NM_007232	11255		NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
219374	chr8	70378651	70379050	+	0	NA	intron (NM_001321703, intron 1 of 22)	MIR|SINE|MIR	24540	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
56649	chr12	119659171	119659630	+	0	NA	Intergenic	HAL1ME|LINE|L1	-8733	NM_006253	5564		NM_006253	ENSG00000111725	PRKAB1	AMPK|HAMPKb	protein kinase AMP-activated non-catalytic subunit beta 1	protein-coding
42575	chr11	71998651	71999900	+	0	NA	promoter-TSS (NM_001145057)	promoter-TSS (NM_001145057)	212	NM_005699	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
64595	chr14	28766571	28766930	+	0	NA	promoter-TSS (NM_005249)	promoter-TSS (NM_005249)	-37	NM_005249	2290		NM_005249	ENSG00000176165	FOXG1	BF1|BF2|FHKL3|FKH2|FKHL1|FKHL2|FKHL3|FKHL4|FOXG1A|FOXG1B|FOXG1C|HBF-1|HBF-2|HBF-3|HBF-G2|HBF2|HFK1|HFK2|HFK3|KHL2|QIN	forkhead box G1	protein-coding
89448	chr16	88993251	88993580	+	0	NA	Intergenic	Intergenic	-16208	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
197017	chr6	53326151	53326680	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	11202	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
172005	chr4	960701	961080	+	0	NA	intron (NM_001347, intron 22 of 22)	intron (NM_001347, intron 22 of 22)	12679	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
49117	chr12	14779451	14779550	+	0	NA	Intergenic	AluJb|SINE|Alu	5095	NM_177925	55766		NM_018267	ENSG00000246705	H2AJ	H2AFJ	H2A.J histone	protein-coding
55255	chr12	102095621	102095950	+	0	NA	intron (NM_024057, intron 5 of 9)	intron (NM_024057, intron 5 of 9)	24329	NM_024057	79023		NM_024057	ENSG00000075188	NUP37	MCPH24|p37	nucleoporin 37	protein-coding
39189	chr11	57464651	57465200	+	0	NA	intron (NM_178570, intron 1 of 2)	CpG	4397	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
231002	chr9	129503151	129503930	+	0	NA	non-coding (NR_038955, exon 4 of 5)	non-coding (NR_038955, exon 4 of 5)	14880	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
34047	chr10	124737271	124738250	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	6618	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
93735	chr17	19744451	19745230	+	0	NA	intron (NM_001330150, intron 1 of 9)	CpG	619	NM_001135168	218		NM_000691	ENSG00000108602	ALDH3A1	ALDH3|ALDHIII	aldehyde dehydrogenase 3 family member A1	protein-coding
149449	chr21	31622371	31622530	+	0	NA	Intergenic	Intergenic	-37243	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
68041	chr14	75214701	75215830	+	0	NA	Intergenic	Intergenic	-38653	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
120035	chr19	41960851	41961150	+	0	NA	Intergenic	Intergenic	-1679	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
112053	chr19	5143351	5144000	+	0	NA	intron (NM_015015, intron 18 of 22)	intron (NM_015015, intron 18 of 22)	174562	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
234682	chrX	20268271	20268730	+	0	NA	Intergenic	CpG-29521	-1591	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
122333	chr19	49154671	49155630	+	0	NA	exon (NM_002152, exon 1 of 6)	exon (NM_002152, exon 1 of 6)	246	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
110355	chr19	1892571	1893080	+	0	NA	Intergenic	AluSz|SINE|Alu	-7329	NM_031213	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
64560	chr14	24631171	24631330	+	0	NA	intron (NM_001346011, intron 4 of 4)	intron (NM_001346011, intron 4 of 4)	2940	NM_004131	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
82307	chr16	15653521	15653780	+	0	NA	intron (NM_017668, intron 1 of 8)	intron (NM_017668, intron 1 of 8)	3405	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
62885	chr13	110704871	110705030	+	0	NA	intron (NM_001352252, intron 2 of 15)	MIRb|SINE|MIR	1166	NR_147942	79587		NM_024537	ENSG00000134905	CARS2	COXPD27|cysRS	cysteinyl-tRNA synthetase 2, mitochondrial	protein-coding
235527	chrX	47223721	47224730	+	0	NA	intron (NM_033018, intron 2 of 15)	intron (NM_033018, intron 2 of 15)	1207	NM_001170460	5127		NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
105529	chr17	83122001	83122530	+	0	NA	Intergenic	(GAGCTCA)n|Simple_repeat|Simple_repeat	41119	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
2193	chr1	8601401	8601600	+	0	NA	intron (NM_012102, intron 5 of 23)	intron (NM_012102, intron 5 of 23)	-106587	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
83991	chr16	29436751	29437230	+	0	NA	intron (NR_135312, intron 9 of 18)	intron (NR_135312, intron 9 of 18)	10036	NR_135312	100422558		NR_135312	ENSG00000254634	SMG1P6	-	SMG1 pseudogene 6	pseudo
183290	chr5	76545401	76545800	+	0	NA	intron (NM_006633, intron 2 of 35)	L1ME5|LINE|L1	-1809	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
201657	chr6	149488951	149489050	+	0	NA	Intergenic	Intergenic	-3986	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
58622	chr12	132496271	132496980	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	6474	NM_001382740	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
104712	chr17	81551271	81552800	+	0	NA	exon (NM_025161, exon 2 of 9)	exon (NM_025161, exon 2 of 9)	318	NR_033338	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
168506	chr3	143822021	143822300	+	0	NA	intron (NM_173653, intron 2 of 15)	LTR16A|LTR|ERVL	26308	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
131659	chr2	97658201	97660000	+	0	NA	intron (NM_005735, intron 4 of 10)	intron (NM_005735, intron 4 of 10)	4944	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
203866	chr7	1467471	1468300	+	0	NA	Intergenic	Intergenic	-8415	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
192119	chr6	16740921	16741700	+	0	NA	intron (NR_152112, intron 1 of 1)	intron (NR_152112, intron 1 of 1)	18874	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
160252	chr3	24238021	24238300	+	0	NA	intron (NM_001374825, intron 2 of 10)	intron (NM_001374825, intron 2 of 10)	86836	NR_121667	101927854		NR_121667		THRB-AS2	-	THRB antisense RNA 2	ncRNA
14806	chr1	146271321	146271580	+	0	NA	Intergenic	Intergenic	-26323	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
4384	chr1	20782501	20782700	+	0	NA	intron (NR_164850, intron 1 of 12)	AluJb|SINE|Alu	4052	NM_001376789	50809		NM_016287	ENSG00000127483	HP1BP3	HP1-BP74|HP1BP74	heterochromatin protein 1 binding protein 3	protein-coding
167080	chr3	127014401	127014800	+	0	NA	exon (NM_032242, exon 12 of 31)	exon (NM_032242, exon 12 of 31)	26006	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
30947	chr10	87656521	87656780	+	0	NA	Intergenic	Intergenic	-3228	NM_004670	9060		NM_004670	ENSG00000198682	PAPSS2	ATPSK2|BCYM4|SK2	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding
214554	chr7	150561301	150561700	+	0	NA	Intergenic	LTR14C|LTR|ERVK	-5870	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
224501	chr9	19028901	19029130	+	0	NA	intron (NM_001287049, intron 1 of 3)	intron (NM_001287049, intron 1 of 3)	4194	NM_001287050	158297		NM_153707	ENSG00000155875	SAXO1	C9orf138|FAM154A	stabilizer of axonemal microtubules 1	protein-coding
173832	chr4	20418821	20419300	+	0	NA	intron (NM_001289136, intron 4 of 35)	intron (NM_001289136, intron 4 of 35)	26871	NR_037876	100505893		NR_037876	ENSG00000248228	SLIT2-IT1	-	SLIT2 intronic transcript 1	ncRNA
100449	chr17	61396351	61396650	+	0	NA	intron (NR_125750, intron 1 of 2)	CpG	3106	NR_125749	103689912		NR_125749	ENSG00000267280	TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
230447	chr9	128167151	128167450	+	0	NA	intron (NM_001257975, intron 15 of 17)	intron (NM_001257975, intron 15 of 17)	7035	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
131909	chr2	98821671	98821830	+	0	NA	intron (NM_207362, intron 7 of 9)	intron (NM_207362, intron 7 of 9)	-49852	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
139041	chr2	218582151	218582630	+	0	NA	intron (NR_073390, intron 2 of 6)	intron (NR_073390, intron 2 of 6)	13551	NR_073390	9125		NM_005444	ENSG00000144580	CNOT9	CAF40|CT129|RCD-1|RCD1|RQCD1	CCR4-NOT transcription complex subunit 9	protein-coding
201907	chr6	151373201	151374400	+	0	NA	intron (NM_020861, intron 1 of 2)	MIR|SINE|MIR	17759	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
125068	chr2	9632351	9632880	+	0	NA	Intergenic	Intergenic	-1618	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
18236	chr1	161043271	161043700	+	0	NA	intron (NM_207005, intron 1 of 10)	intron (NM_207005, intron 1 of 10)	1499	NM_001276373	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
142692	chr20	8031051	8031950	+	0	NA	Intergenic	Intergenic	-11739	NM_021156	56255		NM_021156	ENSG00000125827	TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin related transmembrane protein 4	protein-coding
111028	chr19	3070301	3070850	+	0	NA	Intergenic	MIRb|SINE|MIR	-5861	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
133600	chr2	121748201	121748400	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-7245	NR_048559	7247		NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
176460	chr4	89304971	89305300	+	0	NA	intron (NM_198281, intron 1 of 1)	L2b|LINE|L2	2665	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
235370	chrX	44898151	44899800	+	0	NA	intron (NM_001291416, intron 2 of 28)	intron (NM_001291416, intron 2 of 28)	25787	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
69336	chr14	93937821	93938280	+	0	NA	intron (NM_016150, intron 6 of 7)	MIRb|SINE|MIR	10252	NR_039728	100616140		NR_039728	ENSG00000265768	MIR4506	-	microRNA 4506	ncRNA
233106	chr9	137125601	137126000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11067	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
161817	chr3	45582401	45582600	+	0	NA	Intergenic	Intergenic	-12251	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
235845	chrX	49915551	49915960	+	0	NA	Intergenic	Intergenic	-6841	NM_001272102	1184		NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENT1|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	chloride voltage-gated channel 5	protein-coding
216627	chr8	22100171	22100730	+	0	NA	intron (NM_022749, intron 10 of 16)	intron (NM_022749, intron 10 of 16)	8969	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
195793	chr6	41006201	41006480	+	0	NA	intron (NR_110873, intron 1 of 5)	AluSz|SINE|Alu	16940	NR_110873	101929555		NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
227705	chr9	93028301	93030630	+	0	NA	intron (NM_001369951, intron 14 of 17)	intron (NM_001369951, intron 14 of 17)	-14521	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
190115	chr5	177966071	177966230	+	0	NA	Intergenic	Intergenic	26623	NR_149047	100128340		NR_149047		LOC100128340	-	uncharacterized LOC100128340	ncRNA
20399	chr1	198179201	198180200	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	22702	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
189986	chr5	177455201	177456000	+	0	NA	intron (NM_001375593, intron 2 of 2)	CpG-22868	6826	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
213064	chr7	131072491	131073200	+	0	NA	intron (NR_109852, intron 2 of 5)	LTR33C|LTR|ERVL	34185	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
203898	chr7	1494521	1494780	+	0	NA	intron (NM_001080453, intron 14 of 47)	intron (NM_001080453, intron 14 of 47)	9739	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
133950	chr2	130572371	130572530	+	0	NA	intron (NR_027314, intron 1 of 1)	AluJb|SINE|Alu	1601	NR_027314	150527		NR_027313	ENSG00000290614	PRSS40A	TISP43	serine protease 40A (pseudogene)	pseudo
197230	chr6	68967951	68968280	+	0	NA	intron (NM_001704, intron 8 of 31)	intron (NM_001704, intron 8 of 31)	332833	NM_001704	577		NM_001704	ENSG00000135298	ADGRB3	BAI3	adhesion G protein-coupled receptor B3	protein-coding
106058	chr18	9094571	9094730	+	0	NA	Intergenic	Intergenic	-8049	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
127137	chr2	37666771	37666930	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	4792	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
6183	chr1	27439001	27439230	+	0	NA	intron (NM_006990, intron 1 of 8)	MIRb|SINE|MIR	46493	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
38328	chr11	44304571	44304930	+	0	NA	intron (NM_021926, intron 1 of 3)	CpG	5389	NM_021926	60529		NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
168887	chr3	152312471	152312700	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	13571	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
102445	chr17	75690671	75691030	+	0	NA	intron (NM_001301855, intron 4 of 11)	intron (NM_001301855, intron 4 of 11)	23512	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
82936	chr16	21842721	21842980	+	0	NA	intron (NM_001310148, intron 5 of 7)	AluSq2|SINE|Alu	14807	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
36709	chr11	8962571	8962930	+	0	NA	intron (NM_001286095, intron 1 of 4)	intron (NM_001286095, intron 1 of 4)	1692	NM_020644	56674		NM_020644	ENSG00000175348	TMEM9B	C11orf15	TMEM9 domain family member B	protein-coding
209221	chr7	75526171	75526630	+	0	NA	intron (NR_028059, intron 1 of 8)	intron (NR_028059, intron 1 of 8)	1723	NR_028059	5387		NM_005395	ENSG00000291092	PMS2P3	PMS2L3|PMS2L9|PMS5|PMSR3	PMS1 homolog 2, mismatch repair system component pseudogene 3	pseudo
31032	chr10	88882921	88884100	+	0	NA	intron (NM_020799, intron 1 of 10)	intron (NM_020799, intron 1 of 10)	3265	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
176791	chr4	102513801	102514000	+	0	NA	intron (NM_001382625, intron 2 of 24)	AluY|SINE|Alu	-11414	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
222932	chr8	143015301	143016580	+	0	NA	intron (NR_026913, intron 1 of 1)	intron (NR_026913, intron 1 of 1)	2450	NR_026913	100133669		NR_026913		LY6E-DT	-	LY6E divergent transcript	ncRNA
208931	chr7	74090121	74090750	+	0	NA	intron (NM_002314, intron 2 of 15)	intron (NM_002314, intron 2 of 15)	-2782	NM_001204426	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
125096	chr2	9712021	9712680	+	0	NA	Intergenic	Intergenic	-81353	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
182675	chr5	67310701	67311300	+	0	NA	Intergenic	L1PA14|LINE|L1	-114201	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
40676	chr11	64759101	64759730	+	0	NA	intron (NM_005609, intron 1 of 19)	intron (NM_005609, intron 1 of 19)	559	NM_005609	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
200424	chr6	134938921	134939180	+	0	NA	intron (NM_001193480, intron 3 of 5)	intron (NM_001193480, intron 3 of 5)	11051	NM_170771	64577		NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding
191880	chr6	15319251	15319350	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	70445	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
58275	chr12	128976151	128976300	+	0	NA	intron (NM_144669, intron 7 of 7)	intron (NM_144669, intron 7 of 7)	122747	NM_001366888	144423		NM_144669	ENSG00000151948	GLT1D1	-	glycosyltransferase 1 domain containing 1	protein-coding
195694	chr6	38671571	38672200	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	31260	NM_006708	2739		NM_006708	ENSG00000124767	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
126695	chr2	30152621	30153680	+	0	NA	intron (NM_001127400, intron 2 of 3)	AluY|SINE|Alu	6143	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
170009	chr3	180910271	180910430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2320	NM_001013439	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
229958	chr9	126699751	126699850	+	0	NA	3' UTR (NM_001174146, exon 8 of 8)	3' UTR (NM_001174146, exon 8 of 8)	85872	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
76846	chr15	77634421	77634750	+	0	NA	intron (NM_001301195, intron 3 of 3)	MIRb|SINE|MIR	-1673	NM_032808	84894		NM_032808	ENSG00000169783	LINGO1	LERN1|LRRN6A|MRT64|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
22985	chr1	226097701	226098100	+	0	NA	Intergenic	MER4CL34|LTR|ERV1	14325	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
46547	chr11	128478351	128478780	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	43745	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
205544	chr7	20219851	20220180	+	0	NA	intron (NR_134569, intron 3 of 3)	MLT1N2|LTR|ERVL-MaLR	2438	NR_134569	100506098		NR_134567	ENSG00000233834	GIRGL	MACC1-DT	glutamine insufficiency regulator of glutaminase lncRNA	ncRNA
197384	chr6	73492951	73493750	+	0	NA	intron (NM_133645, intron 11 of 12)	intron (NM_133645, intron 11 of 12)	25088	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
198810	chr6	109026121	109026380	+	0	NA	intron (NM_014454, intron 1 of 9)	L1MEd|LINE|L1	-16695	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
37501	chr11	18408351	18409630	+	0	NA	TTS (NM_001165415)	TTS (NM_001165415)	-3316	NM_002301	3948		NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
29807	chr10	72300751	72301600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	27251	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
10314	chr1	64881351	64881650	+	0	NA	intron (NM_001321857, intron 3 of 24)	intron (NM_001321857, intron 3 of 24)	85049	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
122039	chr19	48635201	48636060	+	0	NA	exon (NM_001352, exon 2 of 4)	exon (NM_001352, exon 2 of 4)	1749	NM_001352	1628		NM_001352	ENSG00000105516	DBP	DABP|taxREB302	D-box binding PAR bZIP transcription factor	protein-coding
112359	chr19	5963501	5963700	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	14540	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
229608	chr9	123867221	123867480	+	0	NA	intron (NR_148208, intron 2 of 20)	intron (NR_148208, intron 2 of 20)	62776	NM_001352968	57706		NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
232748	chr9	136659051	136659750	+	0	NA	non-coding (NR_046367, exon 1 of 10)	non-coding (NR_046367, exon 1 of 10)	544	NR_046367	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
113267	chr19	8515251	8516380	+	0	NA	Intergenic	AluSx|SINE|Alu	-1648	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
186128	chr5	134150621	134151180	+	0	NA	3' UTR (NM_170679, exon 6 of 6)	3' UTR (NM_170679, exon 6 of 6)	26050	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
34110	chr10	126013801	126014200	+	0	NA	3' UTR (NM_001288973, exon 23 of 23)	3' UTR (NM_001288973, exon 23 of 23)	-40727	NR_102707	101410540		NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
211705	chr7	106861851	106862150	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-3282	NM_001282427	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
166658	chr3	120051451	120051800	+	0	NA	intron (NM_001146156, intron 1 of 10)	AluSz6|SINE|Alu	33023	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
137633	chr2	197371171	197371330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-60470	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
97093	chr17	42421551	42421850	+	0	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	1556	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
49040	chr12	14384151	14384250	+	0	NA	intron (NM_001286515, intron 1 of 12)	intron (NM_001286515, intron 1 of 12)	-1081	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
186210	chr5	134370421	134373680	+	0	NA	intron (NM_003337, intron 1 of 5)	CpG	481	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
54943	chr12	96227601	96228600	+	0	NA	intron (NM_005230, intron 2 of 4)	AluJo|SINE|Alu	-27398	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
55038	chr12	96392121	96392380	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	8189	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
201422	chr6	146876471	146876630	+	0	NA	intron (NR_034115, intron 7 of 10)	intron (NR_034115, intron 7 of 10)	-72726	NR_003954	729176		NR_003954		KATNBL1P6	-	katanin regulatory subunit B1 like 1 pseudogene 6	pseudo
155500	chr22	38654651	38655250	+	0	NA	intron (NM_001384271, intron 1 of 14)	(AAAT)n|Simple_repeat|Simple_repeat	1442	NM_001013647	646851		NM_001013647	ENSG00000184949	FAM227A	-	family with sequence similarity 227 member A	protein-coding
114306	chr19	11880971	11881430	+	0	NA	Intergenic	HERVI-int|LTR|ERV1	-6582	NM_001364730	7620		NM_021915	ENSG00000198429	ZNF69	Cos5|hZNF3	zinc finger protein 69	protein-coding
92265	chr17	8039201	8039800	+	0	NA	exon (NM_001141, exon 2 of 14)	exon (NM_001141, exon 2 of 14)	441	NM_001039131	247		NM_001141	ENSG00000179593	ALOX15B	15-LOX-2	arachidonate 15-lipoxygenase type B	protein-coding
30769	chr10	84332451	84332780	+	0	NA	intron (NM_001284241, intron 1 of 2)	AluSc|SINE|Alu	4026	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
48504	chr12	9866451	9867500	+	0	NA	intron (NM_005127, intron 1 of 4)	MamGypLTR1a|LTR|Gypsy	2884	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
112585	chr19	6667151	6667680	+	0	NA	exon (NM_003807, exon 3 of 5)	exon (NM_003807, exon 3 of 5)	2743	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
19913	chr1	184222401	184223350	+	0	NA	Intergenic	Intergenic	-164154	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
193203	chr6	29752101	29752800	+	0	NA	Intergenic	Intergenic	-1302	NR_001590	340198		NR_001590	ENSG00000235821	IFITM4P	dJ377H14.5	interferon induced transmembrane protein 4 pseudogene	pseudo
166908	chr3	124886471	124887750	+	0	NA	5' UTR (NM_002213, exon 1 of 15)	5' UTR (NM_002213, exon 1 of 15)	255	NM_002213	3693		NM_002213	ENSG00000082781	ITGB5	-	integrin subunit beta 5	protein-coding
89555	chr16	89243771	89244330	+	0	NA	Intergenic	MER50-int|LTR|ERV1	26347	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
30538	chr10	79449001	79450650	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-4201	NM_153367	219654		NM_153367	ENSG00000165424	ZCCHC24	C10orf56|Z3CXXC8	zinc finger CCHC-type containing 24	protein-coding
16680	chr1	155191751	155192200	+	0	NA	exon (NM_001204286, exon 2 of 9)	exon (NM_001204286, exon 2 of 9)	934	NM_001204287	4582		NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|ADTKD2|CA 15-3|CD227|Ca15-3|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding
9318	chr1	46532601	46533980	+	0	NA	exon (NM_001357063, exon 3 of 3)	exon (NM_001357063, exon 3 of 3)	2225	NM_001357063	105378696		NM_001357063	ENSG00000282881	TMEM275	-	transmembrane protein 275	protein-coding
145501	chr20	43953501	43953750	+	0	NA	intron (NM_001098798, intron 1 of 7)	L2|LINE|L2	7729	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
226171	chr9	64411221	64411480	+	0	NA	non-coding (NR_146419, exon 15 of 25)	non-coding (NR_146419, exon 15 of 25)	41956	NR_146419	110006327		NR_146419		ANKRD20A4-ANKRD20A20P	-	ANKRD20A4-ANKRD20A20P readthrough	ncRNA
111137	chr19	3278651	3278950	+	0	NA	intron (NM_021938, intron 5 of 12)	intron (NM_021938, intron 5 of 12)	53522	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
92290	chr17	8087701	8087930	+	0	NA	promoter-TSS (NM_001139)	promoter-TSS (NM_001139)	-99	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
210198	chr7	98996101	98996300	+	0	NA	intron (NM_001375524, intron 67 of 72)	intron (NM_001375524, intron 67 of 72)	-16965	NR_110102	101927550		NR_110102		LOC101927550	-	uncharacterized LOC101927550	ncRNA
209433	chr7	76382871	76383430	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-14372	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
202205	chr6	156776121	156777700	+	0	NA	promoter-TSS (NM_001374820)	promoter-TSS (NM_001374820)	-468	NM_001374828	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
194934	chr6	35173701	35174100	+	0	NA	Intergenic	Intergenic	-32490	NM_001261818	6954		NM_018679	ENSG00000124678	TCP11	D6S230E|FPPR	t-complex 11	protein-coding
80510	chr16	2747001	2747400	+	0	NA	intron (NR_027275, intron 2 of 5)	AluSp|SINE|Alu	-2403	NR_027274	100128788		NR_027274	ENSG00000205913	SRRM2-AS1	-	SRRM2 antisense RNA 1	ncRNA
11084	chr1	85272101	85273300	+	0	NA	intron (NM_001320715, intron 1 of 2)	MIRb|SINE|MIR	-3658	NR_045484	646626		NR_045484		BCL10-AS1	-	BCL10 antisense RNA 1	ncRNA
180697	chr5	21491221	21492280	+	0	NA	intron (NR_027028, intron 4 of 5).2	AluJo|SINE|Alu	32270	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
110948	chr19	2856501	2857100	+	0	NA	3' UTR (NM_152791, exon 4 of 4)	3' UTR (NM_152791, exon 4 of 4)	-10535	NM_001300843	80032		NM_024967	ENSG00000172000	ZNF556	-	zinc finger protein 556	protein-coding
50043	chr12	44113571	44113730	+	0	NA	intron (NM_001286212, intron 3 of 6)	L1HS|LINE|L1	277569	NM_032256	84216		NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
84831	chr16	31107971	31109030	+	0	NA	intron (NM_005881, intron 1 of 11)	CpG	114	NM_001122957	10295		NM_005881	ENSG00000103507	BCKDK	BCKDKD|BDK	branched chain keto acid dehydrogenase kinase	protein-coding
182941	chr5	70928321	70929680	+	0	NA	intron (NM_017411, intron 1 of 8).5	L2|LINE|L2	3913	NM_017411	6607		NM_017411	ENSG00000205571	SMN2	BCD541|C-BCD541|GEMIN1|SMNC|TDRD16B	survival of motor neuron 2, centromeric	protein-coding
212813	chr7	130414621	130415430	+	0	NA	intron (NM_001257159, intron 2 of 8)	intron (NM_001257159, intron 2 of 8)	25991	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
215484	chr7	158342121	158342550	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	190478	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
75295	chr15	65184671	65186080	+	0	NA	promoter-TSS (NR_133680)	promoter-TSS (NR_133680)	-33	NM_006660	10845		NM_006660	ENSG00000166855	CLPX	EPP2	caseinolytic mitochondrial matrix peptidase chaperone subunit X	protein-coding
56341	chr12	112977621	112978900	+	0	NA	promoter-TSS (NM_002535)	promoter-TSS (NM_002535)	-259	NM_001032731	4939		NM_002535	ENSG00000111335	OAS2	-	2'-5'-oligoadenylate synthetase 2	protein-coding
137734	chr2	197808171	197808330	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	3657	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
35543	chr11	1597921	1598180	+	0	NA	exon (NM_001004325, exon 1 of 1)	exon (NM_001004325, exon 1 of 1)	244	NM_001004325	440021		NM_001004325	ENSG00000205867	KRTAP5-2	KRTAP5-8|KRTAP5.2	keratin associated protein 5-2	protein-coding
84138	chr16	29730651	29731200	+	0	NA	Intergenic	AluJr|SINE|Alu	15065	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
27248	chr10	29649601	29649800	+	0	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	-14729	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
88201	chr16	81796851	81797030	+	0	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	17649	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
75260	chr15	64985271	64985430	+	0	NA	intron (NM_001127890, intron 1 of 7)	L2a|LINE|L2	4120	NM_001127889	51324		NM_016630	ENSG00000090487	SPG21	ABHD21|ACP33|BM-019|GL010|MAST	SPG21 abhydrolase domain containing, maspardin	protein-coding
169145	chr3	156450051	156450230	+	0	NA	intron (NM_172160, intron 2 of 13)	Charlie8|DNA|hAT-Charlie	-3204	NR_046618	100874084		NR_046618	ENSG00000242370	KCNAB1-AS1	-	KCNAB1 antisense RNA 1	ncRNA
72343	chr15	31331221	31331760	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	4655	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
237710	chrX	124603401	124603600	+	0	NA	intron (NM_001163279, intron 11 of 31)	MIR|SINE|MIR	256937	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
200209	chr6	131213471	131213980	+	0	NA	intron (NR_164834, intron 8 of 9)	LTR101_Mam|LTR|ERVL	-36679	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
130207	chr2	84631101	84631530	+	0	NA	intron (NM_001370, intron 29 of 76)	MER90|LTR|ERV1	114817	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
3571	chr1	16172521	16172780	+	0	NA	Intergenic	Intergenic	-16581	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
161254	chr3	39253721	39253980	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	26186	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
123615	chr19	54528021	54528280	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-4542	NR_104095	90011		NM_033206	ENSG00000290933	KIR3DX1	KIR3DL0|LENG12	killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)	pseudo
194078	chr6	31879951	31880250	+	0	NA	exon (NM_001289413, exon 26 of 26).2	exon (NM_001289413, exon 26 of 26).2	-1054	NM_001178044	80736		NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1	solute carrier family 44 member 4	protein-coding
87784	chr16	75432051	75432150	+	0	NA	intron (NM_006324, intron 1 of 6)	AluSc8|SINE|Alu	1403	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
83586	chr16	28160071	28160430	+	0	NA	intron (NM_001270940, intron 7 of 24)	AluSx1|SINE|Alu	51715	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
46938	chr11	134386871	134387700	+	0	NA	intron (NM_054025, intron 2 of 5)	MER74A|LTR|ERVL	24633	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
67026	chr14	67571151	67571980	+	0	NA	intron (NM_020715, intron 9 of 28)	intron (NM_020715, intron 9 of 28)	28703	NM_004569	5283		NM_004569	ENSG00000100564	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis class H	protein-coding
229345	chr9	120919401	120920730	+	0	NA	intron (NM_005658, intron 3 of 7)	intron (NM_005658, intron 3 of 7)	-5493	NM_001190947	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
12901	chr1	110400771	110400930	+	0	NA	TTS (NM_001382293)	TTS (NM_001382293)	6844	NM_001382293	10542		NM_006402	ENSG00000134248	LAMTOR5	HBXIP|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding
76427	chr15	74790731	74791500	+	0	NA	intron (NM_001354988, intron 2 of 14)	L1ME4b|LINE|L1	-2358	NR_039738	100616183		NR_039738	ENSG00000264386	MIR4513	-	microRNA 4513	ncRNA
93103	chr17	17672371	17672780	+	0	NA	Intergenic	Intergenic	5113	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
229870	chr9	126485851	126486150	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-75496	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
46289	chr11	124868571	124869700	+	0	NA	intron (NM_022370, intron 2 of 27)	intron (NM_022370, intron 2 of 27)	3703	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
36217	chr11	3544571	3545350	+	0	NA	intron (NR_126335, intron 1 of 2)	GA-rich|Low_complexity|Low_complexity	27027	NR_126335	101927708		NR_126335	ENSG00000255367	LOC101927708	-	uncharacterized LOC101927708	ncRNA
12372	chr1	101252651	101253050	+	0	NA	Intergenic	Intergenic	15831	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
186037	chr5	134032071	134032230	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-27175	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
156267	chr22	40417901	40418350	+	0	NA	intron (NM_001282661, intron 11 of 13)	intron (NM_001282661, intron 11 of 13)	45315	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
123488	chr19	54190501	54192180	+	0	NA	promoter-TSS (NM_001077446)	promoter-TSS (NM_001077446)	32	NM_001077446	79042		NM_024075	ENSG00000170892	TSEN34	LENG5|PCH2C|SEN34|SEN34L	tRNA splicing endonuclease subunit 34	protein-coding
132086	chr2	101303851	101304500	+	0	NA	intron (NM_173647, intron 1 of 6)	AluSz6|SINE|Alu	4526	NM_173647	284996		NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
59882	chr13	30677401	30677600	+	0	NA	Intergenic	L2a|LINE|L2	-35978	NM_001204406	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
104831	chr17	81821101	81821300	+	0	NA	Intergenic	Intergenic	12091	NM_001288798	348262		NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
239480	chrY	56739871	56740250	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-214195	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
41412	chr11	66046751	66047050	+	0	NA	intron (NM_033036, intron 1 of 2)	intron (NM_033036, intron 1 of 2)	2261	NM_033036	89792		NM_033036	ENSG00000175229	GAL3ST3	GAL3ST-3|GAL3ST2	galactose-3-O-sulfotransferase 3	protein-coding
52204	chr12	54370251	54371250	+	0	NA	intron (NM_001290002, intron 7 of 8)	intron (NM_001290002, intron 7 of 8)	-6264	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
105390	chr17	82720101	82720300	+	0	NA	intron (NR_046408, intron 3 of 6)	intron (NR_046408, intron 3 of 6)	3494	NM_024619	79672		NM_024619	ENSG00000141560	FN3KRP	FN3KL	fructosamine 3 kinase related protein	protein-coding
104516	chr17	81235621	81236080	+	0	NA	intron (NM_144679, intron 4 of 11)	intron (NM_144679, intron 4 of 11)	3205	NM_144679	146705		NM_144679	ENSG00000167302	TEPSIN	C17orf56|ENTHD2	TEPSIN adaptor related protein complex 4 accessory protein	protein-coding
133878	chr2	129880401	129880930	+	0	NA	Intergenic	Intergenic	-3174	NR_149127	105373615		NR_149127	ENSG00000229536	LINC02572	-	long intergenic non-protein coding RNA 2572	ncRNA
168702	chr3	150634651	150634750	+	0	NA	Intergenic	AluY|SINE|Alu	31379	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
216452	chr8	19518501	19518700	+	0	NA	intron (NM_001354497, intron 1 of 7)	LTR9|LTR|ERV1	83945	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
13397	chr1	113950471	113951280	+	0	NA	promoter-TSS (NM_198269)	promoter-TSS (NM_198269)	-270	NM_198269	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
206818	chr7	37181671	37182480	+	0	NA	intron (NM_014800, intron 13 of 21)	intron (NM_014800, intron 13 of 21)	171593	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
110589	chr19	2165101	2166650	+	0	NA	intron (NM_032482, intron 1 of 27)	AluY|SINE|Alu	1942	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
107569	chr18	48830221	48831580	+	0	NA	intron (NM_014772, intron 10 of 11)	L2a|LINE|L2	111907	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
22059	chr1	211323321	211324000	+	0	NA	Intergenic	Intergenic	-2955	NM_004619	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
20691	chr1	200561201	200561400	+	0	NA	intron (NM_001305792, intron 23 of 27)	AluSx4|SINE|Alu	57538	NM_001305792	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
237567	chrX	120800171	120800330	+	0	NA	Intergenic	L1MA9|LINE|L1	75675	NM_001145718	643311		NM_001145718	ENSG00000236446	CT47B1	CT47.13|CT47A13	cancer/testis antigen family 47 member B1	protein-coding
185700	chr5	132002071	132002230	+	0	NA	intron (NM_001205250, intron 1 of 20)	intron (NM_001205250, intron 1 of 20)	9508	NM_001205247	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
159213	chr3	12895651	12896600	+	0	NA	TTS (NM_001134382)	TTS (NM_001134382)	-10914	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
119293	chr19	39823351	39823650	+	0	NA	Intergenic	Intergenic	6302	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
6645	chr1	28958321	28958580	+	0	NA	intron (NM_001376013, intron 1 of 20)	AluJb|SINE|Alu	43874	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
230004	chr9	126916771	126917130	+	0	NA	intron (NM_001366400, intron 1 of 18)	intron (NM_001366400, intron 1 of 18)	1511	NM_001366400	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
179021	chr4	165096901	165097430	+	0	NA	intron (NM_001100389, intron 3 of 5)	intron (NM_001100389, intron 3 of 5)	15695	NM_001100389	201931		NM_152681	ENSG00000170088	TMEM192	-	transmembrane protein 192	protein-coding
166371	chr3	113020601	113020900	+	0	NA	Intergenic	Intergenic	-1079	NM_001319109	25871		NM_015412	ENSG00000163608	NEPRO	ANXD3|C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
127028	chr2	37083451	37086280	+	0	NA	promoter-TSS (NM_019024)	promoter-TSS (NM_019024)	347	NM_001371856	253635		NM_174931	ENSG00000152133	GPATCH11	CCDC75|CENP-Y|CENPY	G-patch domain containing 11	protein-coding
159982	chr3	18111751	18112050	+	0	NA	intron (NR_161333, intron 4 of 4)	intron (NR_161333, intron 4 of 4)	149348	NR_161333	339862		NR_046199		BALR6	BALR-6	B-cell acute lymphoblastic leukemia associated long RNA 6	ncRNA
210166	chr7	98287171	98287330	+	0	NA	intron (NM_001159491, intron 2 of 2)	intron (NM_001159491, intron 2 of 2)	5564	NM_015379	25798		NM_015379	ENSG00000164713	BRI3	I3	brain protein I3	protein-coding
207186	chr7	43620471	43621250	+	0	NA	intron (NM_004760, intron 4 of 6)	intron (NM_004760, intron 4 of 6)	37752	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
23535	chr1	229191301	229191530	+	0	NA	Intergenic	L1ME5|LINE|L1	-16614	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
230331	chr9	127980301	127982100	+	0	NA	promoter-TSS (NM_001035254)	promoter-TSS (NM_001035254)	-211	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
128154	chr2	48442371	48442530	+	0	NA	intron (NM_001193475, intron 1 of 19)	MARNA|DNA|TcMar-Mariner	1681	NM_001193475	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
118101	chr19	34427821	34429280	+	0	NA	exon (NM_005499, exon 1 of 17)	exon (NM_005499, exon 1 of 17)	169	NM_005499	10054		NM_005499	ENSG00000126261	UBA2	ACCES|ARX|HRIHFB2115|SAE2	ubiquitin like modifier activating enzyme 2	protein-coding
110660	chr19	2248971	2249650	+	0	NA	promoter-TSS (NM_000479)	promoter-TSS (NM_000479)	-13	NM_000479	268		NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
47961	chr12	6866951	6868770	+	0	NA	promoter-TSS (NM_001258026)	promoter-TSS (NM_001258026)	-254	NM_001258026	7167		NM_000365	ENSG00000111669	TPI1	HEL-S-49|TIM|TPI|TPID	triosephosphate isomerase 1	protein-coding
173711	chr4	15771151	15772130	+	0	NA	Intergenic	L1ME4b|LINE|L1	-6688	NM_001775	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
107680	chr18	49400201	49400700	+	0	NA	intron (NM_001374431, intron 2 of 16)	intron (NM_001374431, intron 2 of 16)	60195	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
194162	chr6	32088571	32088730	+	0	NA	intron (NM_019105, intron 6 of 43).4	intron (NM_019105, intron 6 of 43).4	20688	NM_019105	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
113248	chr19	8497151	8497480	+	0	NA	intron (NM_032152, intron 4 of 9)	AluJo|SINE|Alu	5325	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
65477	chr14	51862321	51862880	+	0	NA	intron (NM_001243774, intron 1 of 2)	intron (NM_001243774, intron 1 of 2)	1988	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
102769	chr17	76288801	76289000	+	0	NA	intron (NM_032134, intron 5 of 18)	AluY|SINE|Alu	18780	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
232767	chr9	136674621	136674880	+	0	NA	exon (NM_001012727, exon 4 of 5)	exon (NM_001012727, exon 4 of 5)	4148	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
88886	chr16	87724451	87725650	+	0	NA	intron (NM_001351937, intron 7 of 11)	L1ME2z|LINE|L1	40936	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
67851	chr14	74038301	74038500	+	0	NA	intron (NM_025057, intron 4 of 11)	intron (NM_025057, intron 4 of 11)	19051	NM_025057	80127		NM_025057	ENSG00000119636	BBOF1	C14orf45|CCDC176|FBB10	basal body orientation factor 1	protein-coding
190754	chr6	443571	443980	+	0	NA	Intergenic	Intergenic	52023	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
217111	chr8	24955271	24955430	+	0	NA	intron (NM_006158, intron 1 of 3)	intron (NM_006158, intron 1 of 3)	1262	NM_006158	4747		NM_006158	ENSG00000277586	NEFL	CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110	neurofilament light chain	protein-coding
150642	chr21	43402951	43403850	+	0	NA	Intergenic	Intergenic	23731	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
234339	chrX	15107501	15107730	+	0	NA	Intergenic	L1M3f|LINE|L1	162468	NM_024087	140462		NM_024087	ENSG00000102048	ASB9	-	ankyrin repeat and SOCS box containing 9	protein-coding
145386	chr20	41276501	41276700	+	0	NA	intron (NM_001384325, intron 1 of 4)	intron (NM_001384325, intron 1 of 4)	-4344	NM_001384324	23051		NM_015035	ENSG00000174306	ZHX3	TIX1	zinc fingers and homeoboxes 3	protein-coding
104337	chr17	80968471	80968630	+	0	NA	non-coding (NR_148968, exon 2 of 2)	non-coding (NR_148968, exon 2 of 2)	2663	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
201950	chr6	151764251	151764580	+	0	NA	intron (NM_001385570, intron 2 of 8)	intron (NM_001385570, intron 2 of 8)	-41290	NM_001291230	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
13199	chr1	112629401	112631030	+	0	NA	intron (NM_006135, intron 1 of 9)	AluSx3|SINE|Alu	10383	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
147696	chr20	62323421	62324480	+	0	NA	intron (NM_005560, intron 43 of 79)	CpG-17979	8607	NR_039915	100616340		NR_039915	ENSG00000284074	MIR4758	-	microRNA 4758	ncRNA
131898	chr2	98761321	98761980	+	0	NA	non-coding (NR_126337, exon 4 of 4)	non-coding (NR_126337, exon 4 of 4)	10248	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
224628	chr9	20554051	20554350	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	-51858	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
230837	chr9	129083121	129083500	+	0	NA	intron (NM_001135917, intron 1 of 6)	intron (NM_001135917, intron 1 of 6)	2199	NR_072983	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
42603	chr11	72099951	72100050	+	0	NA	intron (NM_017907, intron 1 of 4)	AluJr|SINE|Alu	3297	NM_017907	55004		NM_017907	ENSG00000149357	LAMTOR1	C11orf59|PDRO|Ragulator1|p18|p27RF-Rho	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding
75486	chr15	66291801	66292250	+	0	NA	Intergenic	Intergenic	-1284	NM_133375	115752		NM_133375	ENSG00000166938	DIS3L	DIS3L1	DIS3 like exosome 3'-5' exoribonuclease	protein-coding
218063	chr8	38911721	38912400	+	0	NA	intron (NM_021623, intron 1 of 11)	AluSq2|SINE|Alu	10714	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
100839	chr17	64120821	64121600	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	8934	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
173442	chr4	8238821	8239080	+	0	NA	intron (NM_001318480, intron 17 of 17)	intron (NM_001318480, intron 17 of 17)	-30804	NM_053044	94031		NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
101106	chr17	64988501	64989330	+	0	NA	Intergenic	MIRc|SINE|MIR	-13330	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
163819	chr3	52442771	52443330	+	0	NA	intron (NM_020163, intron 1 of 15)	intron (NM_020163, intron 1 of 15)	2053	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
204080	chr7	2086271	2086630	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	2602	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
41635	chr11	66477551	66477850	+	0	NA	TTS (NM_001243135)	TTS (NM_001243135)	2549	NR_120586	101928069		NR_120586	ENSG00000255517	DPP3-DT	-	DPP3 divergent transcript	ncRNA
114581	chr19	12928221	12929000	+	0	NA	exon (NM_004461, exon 6 of 13)	exon (NM_004461, exon 6 of 13)	-1912	NR_149078	106144598		NR_149078	ENSG00000266975	FARSA-AS1	-	FARSA antisense RNA 1	ncRNA
201600	chr6	149357171	149357880	+	0	NA	intron (NM_001369506, intron 2 of 7)	intron (NM_001369506, intron 2 of 7)	39225	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
166877	chr3	123959321	123959650	+	0	NA	intron (NM_022757, intron 1 of 11)	L1MB1|LINE|L1	1744	NM_001366336	64770		NM_022757	ENSG00000175455	CCDC14	-	coiled-coil domain containing 14	protein-coding
67158	chr14	68775421	68776430	+	0	NA	Intergenic	Intergenic	17142	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
78760	chr15	99105401	99105950	+	0	NA	exon (NM_015286, exon 1 of 5)	exon (NM_015286, exon 1 of 5)	595	NM_145728	23336		NM_015286	ENSG00000182253	SYNM	DMN|SYN	synemin	protein-coding
111269	chr19	3542371	3542600	+	0	NA	intron (NM_001135580, intron 1 of 3)	AluSx1|SINE|Alu	3328	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
190653	chr5	181238951	181239580	+	0	NA	intron (NM_006098, intron 4 of 7)	intron (NM_006098, intron 4 of 7)	2624	NR_002592	619571		NR_002592	ENSG00000272296	SNORD96A	U96A	small nucleolar RNA, C/D box 96A	snoRNA
97323	chr17	43254101	43254380	+	0	NA	Intergenic	AluSp|SINE|Alu	-2221	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
125229	chr2	10375521	10376330	+	0	NA	intron (NM_001258359, intron 1 of 4)	MSTB|LTR|ERVL-MaLR	7161	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
97475	chr17	43774221	43774630	+	0	NA	intron (NM_004090, intron 2 of 2)	MLT1L|LTR|ERVL-MaLR	4552	NM_004090	1845		NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
154487	chr22	35647751	35650180	+	0	NA	intron (NM_030641, intron 1 of 2)	intron (NM_030641, intron 1 of 2)	519	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
191556	chr6	11712851	11713350	+	0	NA	TTS (NM_001143948)	TTS (NM_001143948)	65703	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
23114	chr1	226683821	226684750	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-9217	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
86032	chr16	57537921	57538780	+	0	NA	Intergenic	AluJr|SINE|Alu	-1779	NM_033212	92922		NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
232510	chr9	136305071	136305430	+	0	NA	intron (NM_001291516, intron 1 of 9)	intron (NM_001291516, intron 1 of 9)	-1156	NR_111982	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
81709	chr16	11250201	11250650	+	0	NA	Intergenic	Intergenic	5757	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
85701	chr16	56581951	56582300	+	0	NA	Intergenic	AluSz|SINE|Alu	-7403	NM_005954	4504		NM_005954	ENSG00000087250	MT3	GIF|GIFB|GRIF|ZnMT3	metallothionein 3	protein-coding
147940	chr20	62935951	62936250	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	1804	NM_080797	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
230496	chr9	128247471	128247830	+	0	NA	intron (NM_001374269, intron 17 of 21)	intron (NM_001374269, intron 17 of 21)	-2620	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
70578	chr14	102608751	102609130	+	0	NA	intron (NM_015156, intron 2 of 11)	L1MB5|LINE|L1	16291	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
24205	chr1	236097091	236098030	+	0	NA	Intergenic	LTR10A|LTR|ERV1	-32470	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
66692	chr14	64183871	64184030	+	0	NA	intron (NM_015180, intron 96 of 114)	SVA_A|Retroposon|SVA	-30194	NM_182913	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
78795	chr15	99450721	99451380	+	0	NA	Intergenic	Intergenic	-114367	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
157941	chr22	49793171	49793530	+	0	NA	intron (NR_146335, intron 8 of 13)	intron (NR_146335, intron 8 of 13)	30981	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
138700	chr2	213106971	213107330	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	43287	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
204201	chr7	2504671	2505050	+	0	NA	Intergenic	Intergenic	-7669	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
94653	chr17	30211321	30211980	+	0	NA	intron (NM_001045, intron 9 of 14)	intron (NM_001045, intron 9 of 14)	24047	NM_001045	6532		NM_001045	ENSG00000108576	SLC6A4	5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT	solute carrier family 6 member 4	protein-coding
71963	chr15	24878201	24878400	+	0	NA	intron (NM_001349461, intron 1 of 12)	CpG	21729	NM_001349454	6638		NM_003097	ENSG00000128739	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
149839	chr21	35038051	35039150	+	0	NA	non-coding (NR_026812, exon 1 of 1)	non-coding (NR_026812, exon 1 of 1)	826	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
190903	chr6	2781901	2782400	+	0	NA	intron (NM_020135, intron 4 of 6)	intron (NM_020135, intron 4 of 6)	-11774	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
96085	chr17	39610001	39610200	+	0	NA	Intergenic	Intergenic	-2180	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
17663	chr1	157626151	157626330	+	0	NA	Intergenic	Intergenic	-28155	NM_031282	83417		NM_031282	ENSG00000163518	FCRL4	CD307d|FCRH4|IGFP2|IRTA1	Fc receptor like 4	protein-coding
29608	chr10	71754801	71755000	+	0	NA	intron (NM_022153, intron 4 of 6)	MIR3|SINE|MIR	-17050	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
186804	chr5	139379451	139379750	+	0	NA	intron (NM_152685, intron 8 of 14)	intron (NM_152685, intron 8 of 14)	3697	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
184945	chr5	113018121	113018580	+	0	NA	non-coding (NR_038352, exon 9 of 9)	non-coding (NR_038352, exon 9 of 9)	41552	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
28835	chr10	62383501	62384930	+	0	NA	intron (NM_199450, intron 2 of 4)	intron (NM_199450, intron 2 of 4)	-9088	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
159495	chr3	14205971	14206150	+	0	NA	Intergenic	AluSx|SINE|Alu	27243	NM_014463	27258		NM_014463	ENSG00000170860	LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
119415	chr19	40275901	40276530	+	0	NA	intron (NM_001243027, intron 1 of 13)	intron (NM_001243027, intron 1 of 13)	6426	NR_030371	693226		NR_030371	ENSG00000207631	MIR641	MIRN641|hsa-mir-641|mir-641	microRNA 641	ncRNA
132534	chr2	106162471	106162830	+	0	NA	intron (NR_165308, intron 4 of 14)	intron (NR_165308, intron 4 of 14)	-2013	NM_001377509	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
149765	chr21	34792121	34792480	+	0	NA	exon (NM_001001890, exon 6 of 6)	exon (NM_001001890, exon 6 of 6)	46475	NR_038886	100506385		NR_038885	ENSG00000234380	LINC01426	lincRNA-uc002yug.2	long intergenic non-protein coding RNA 1426	ncRNA
26623	chr10	22369551	22369850	+	0	NA	intron (NM_172242, intron 4 of 9)	MIR|SINE|MIR	24204	NM_012443	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
17009	chr1	156017151	156017250	+	0	NA	intron (NM_003145, intron 3 of 5)	FRAM|SINE|Alu	3751	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
125047	chr2	9611421	9611980	+	0	NA	intron (NM_006826, intron 2 of 5)	AluSz6|SINE|Alu	19297	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
177984	chr4	139174271	139175180	+	0	NA	intron (NM_001371324, intron 1 of 10)	MER2|DNA|TcMar-Tigger	2493	NM_001371339	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
73729	chr15	45183751	45184330	+	0	NA	intron (NM_138356, intron 2 of 7)	intron (NM_138356, intron 2 of 7)	-2833	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
49611	chr12	27733101	27733330	+	0	NA	intron (NM_001190864, intron 5 of 6)	intron (NM_001190864, intron 5 of 6)	22383	NM_021821	60488		NM_021821	ENSG00000061794	MRPS35	HDCMD11P|MDS023|MRP-S28|MRPS28|mS35	mitochondrial ribosomal protein S35	protein-coding
230468	chr9	128209501	128210350	+	0	NA	intron (NM_001374269, intron 1 of 21)	MER115|DNA|hAT-Tip100	-5703	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
103002	chr17	76781521	76781780	+	0	NA	Intergenic	Intergenic	-17394	NR_110837	101928514		NR_110837	ENSG00000267065	LINC02080	-	long intergenic non-protein coding RNA 2080	ncRNA
8582	chr1	41380401	41380600	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	-4831	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
13027	chr1	111213001	111213750	+	0	NA	Intergenic	MER50|LTR|ERV1	-8837	NM_001271833	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
68935	chr14	91383871	91384230	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	33770	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
77707	chr15	85688601	85689090	+	0	NA	intron (NM_007200, intron 16 of 36)	intron (NM_007200, intron 16 of 36)	68895	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
43804	chr11	86487701	86487900	+	0	NA	intron (NR_147828, intron 6 of 14)	MER20|DNA|hAT-Charlie	112913	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
105738	chr18	2735771	2736180	+	0	NA	intron (NM_015295, intron 25 of 47)	L1PA16|LINE|L1	80249	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
7842	chr1	36322651	36324880	+	0	NA	promoter-TSS (NM_001304762)	promoter-TSS (NM_001304762)	-120	NR_130899	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
62700	chr13	102802021	102802280	+	0	NA	intron (NM_001159596, intron 1 of 8)	intron (NM_001159596, intron 1 of 8)	3031	NM_017693	54841		NM_017693	ENSG00000134897	BIVM	-	basic, immunoglobulin-like variable motif containing	protein-coding
119688	chr19	41088851	41089150	+	0	NA	exon (NM_000766, exon 2 of 9)	exon (NM_000766, exon 2 of 9)	549	NM_000766	1553		NM_000766	ENSG00000197838	CYP2A13	CPAD|CYP2A|CYPIIA13	cytochrome P450 family 2 subfamily A member 13	protein-coding
4268	chr1	19657601	19658080	+	0	NA	3' UTR (NM_001204086, exon 4 of 4)	3' UTR (NM_001204086, exon 4 of 4)	-7035	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
51314	chr12	51318801	51319880	+	0	NA	intron (NM_001290007, intron 1 of 12)	intron (NM_001290007, intron 1 of 12)	4834	NM_001290009	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
3821	chr1	16871371	16871780	+	0	NA	promoter-TSS (NR_160658)	promoter-TSS (NR_160658)	-651	NR_160658	112267871		NR_160657	ENSG00000228549	LINC03126	-	long intergenic non-protein coding RNA 3126	ncRNA
229521	chr9	122807871	122808430	+	0	NA	Intergenic	AluSq2|SINE|Alu	8027	NM_080859	392392		NM_080859	ENSG00000165204	OR1K1	hg99	olfactory receptor family 1 subfamily K member 1	protein-coding
100765	chr17	63986721	63986980	+	0	NA	Intergenic	MIR|SINE|MIR	-11501	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
117785	chr19	29815301	29815500	+	0	NA	intron (NM_001238, intron 4 of 11)	intron (NM_001238, intron 4 of 11)	3409	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
216920	chr8	22715101	22716550	+	0	NA	intron (NM_001363233, intron 6 of 6)	intron (NM_001363233, intron 6 of 6)	-22345	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
133907	chr2	130184471	130184630	+	0	NA	intron (NM_001330282, intron 3 of 3)	intron (NM_001330282, intron 3 of 3)	2288	NM_025029	80097		NM_025029	ENSG00000152082	MZT2B	FAM128B|MOZART2B	mitotic spindle organizing protein 2B	protein-coding
156139	chr22	40128851	40129600	+	0	NA	intron (NM_001024843, intron 3 of 23)	L2a|LINE|L2	-48700	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
234033	chrX	3841451	3841930	+	0	NA	intron (NR_034031, intron 1 of 4)	THE1A|LTR|ERVL-MaLR	2204	NR_034031	389906		NM_001045547	ENSG00000285756	LOC389906	-	zinc finger protein 839 pseudogene	pseudo
203909	chr7	1502671	1503030	+	0	NA	intron (NM_001080453, intron 3 of 47)	intron (NM_001080453, intron 3 of 47)	1539	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
235435	chrX	45849151	45849680	+	0	NA	non-coding (NR_125365, exon 2 of 3)	non-coding (NR_125365, exon 2 of 3)	2075	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
63645	chr14	20946771	20947030	+	0	NA	Intergenic	Intergenic	-8587	NM_002934	6036		NM_002934	ENSG00000169385	RNASE2	EDN|RAF3|RNS2	ribonuclease A family member 2	protein-coding
18125	chr1	160732801	160733000	+	0	NA	Intergenic	L2a|LINE|L2	-6157	NM_001282594	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
15532	chr1	150528121	150528380	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	12493	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
93078	chr17	17591151	17592830	+	0	NA	promoter-TSS (NM_001267551)	promoter-TSS (NM_001267551)	-282	NM_001267551	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
42069	chr11	67488721	67489630	+	0	NA	intron (NM_001302960, intron 2 of 5)	intron (NM_001302960, intron 2 of 5)	-1070	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
198429	chr6	106094071	106095080	+	0	NA	intron (NM_001198, intron 2 of 6)	intron (NM_001198, intron 2 of 6)	-4366	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
94334	chr17	28845401	28845600	+	0	NA	Intergenic	AluJb|SINE|Alu	-2710	NM_001288633	55731		NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding
34451	chr10	132433071	132433230	+	0	NA	Intergenic	Intergenic	-12039	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
227936	chr9	94372271	94372430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2219	NM_032558	84641		NM_032558	ENSG00000148110	MFSD14B	HIATL1	major facilitator superfamily domain containing 14B	protein-coding
203659	chr7	991401	992050	+	0	NA	intron (NR_156697, intron 4 of 4)	L1MB3|LINE|L1	8544	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
225244	chr9	34251121	34251380	+	0	NA	intron (NM_016525, intron 6 of 6)	intron (NM_016525, intron 6 of 6)	72207	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
40132	chr11	62833621	62834700	+	0	NA	TTS (NR_135084)	TTS (NR_135084)	1926	NR_135084	105369332		NR_135084	ENSG00000256690	STX5-DT	-	STX5 divergent transcript	ncRNA
133657	chr2	127055001	127055200	+	0	NA	intron (NM_139344, intron 11 of 17)	intron (NM_139344, intron 11 of 17)	26965	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
102835	chr17	76468771	76468930	+	0	NA	exon (NM_001166579, exon 5 of 7)	exon (NM_001166579, exon 5 of 7)	1247	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
68457	chr14	85857851	85857950	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-76778	NR_110155	101928767		NR_110155	ENSG00000258733	LINC02328	-	long intergenic non-protein coding RNA 2328	ncRNA
67396	chr14	69790001	69790200	+	0	NA	intron (NM_003049, intron 1 of 4)	L1ME3C|LINE|L1	7141	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
131866	chr2	98707021	98707280	+	0	NA	intron (NM_012214, intron 2 of 15)	AluSz6|SINE|Alu	23982	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
147668	chr20	62291821	62292980	+	0	NA	intron (NM_144498, intron 13 of 13)	intron (NM_144498, intron 13 of 13)	-10496	NM_001281437	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
27951	chr10	42085371	42085830	+	0	NA	Intergenic	Intergenic	282445	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
44380	chr11	102576321	102576700	+	0	NA	TTS (NM_004771)	TTS (NM_004771)	-45763	NM_002423	4316		NM_002423	ENSG00000137673	MMP7	MMP-7|MPSL1|PUMP-1	matrix metallopeptidase 7	protein-coding
218369	chr8	43160251	43160500	+	0	NA	intron (NM_001363228, intron 4 of 15)	L1MC5a|LINE|L1	19911	NM_001363228	138050		NM_025070	ENSG00000165102	HGSNAT	HGNAT|MPS3C|RP73|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
151465	chr21	46224151	46224450	+	0	NA	intron (NM_001145437, intron 2 of 20)	LTR13|LTR|ERVK	4474	NM_002340	4047		NM_002340	ENSG00000160285	LSS	APMR4|CTRCT44|HYPT14|OSC	lanosterol synthase	protein-coding
52452	chr12	55937601	55937800	+	0	NA	intron (NM_001351036, intron 4 of 23)	intron (NM_001351036, intron 4 of 23)	1692	NM_001351037	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
158668	chr3	5124951	5125050	+	0	NA	intron (NM_018184, intron 1 of 6)	intron (NM_018184, intron 1 of 6)	2708	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
230031	chr9	127224121	127226430	+	0	NA	Intergenic	CpG	-38387	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
141795	chr20	265971	266130	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	8326	NM_207469	400830		NM_207469	ENSG00000186458	DEFB132	BD-32|DEFB-32|DEFB32|HEL-75|KFLL827|UNQ827	defensin beta 132	protein-coding
164930	chr3	71207571	71207730	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	37427	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
193209	chr6	29790721	29791380	+	0	NA	promoter-TSS (NR_132323)	promoter-TSS (NR_132323)	-856	NR_132323	352962		NM_001207043	ENSG00000290710	HLA-V	HLA-75|dJ377H14.4	major histocompatibility complex, class I, V (pseudogene)	pseudo
172960	chr4	3781151	3782080	+	0	NA	Intergenic	Intergenic	15230	NM_000683	152		NM_000683	ENSG00000184160	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
185185	chr5	119366121	119366880	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	10481	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
23505	chr1	228772621	228773500	+	0	NA	Intergenic	Intergenic	37581	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
62121	chr13	95623901	95624280	+	0	NA	intron (NM_014934, intron 8 of 21)	intron (NM_014934, intron 8 of 21)	20616	NM_198968	22873		NM_014934	ENSG00000134874	DZIP1	DZIP|DZIPt1|MMVP3|MVP3|SPGF47	DAZ interacting zinc finger protein 1	protein-coding
166071	chr3	108838321	108838780	+	0	NA	intron (NM_016388, intron 2 of 5)	MLT1O|LTR|ERVL-MaLR	15764	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
179321	chr4	180823551	180823650	+	0	NA	Intergenic	Intergenic	335549	NR_033918	728081		NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
127328	chr2	39078471	39078830	+	0	NA	intron (NM_001382394, intron 1 of 22)	MER1B|DNA|hAT-Charlie	42401	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
153747	chr22	29328801	29329400	+	0	NA	intron (NM_001378564, intron 20 of 20)	intron (NM_001378564, intron 20 of 20)	4158	NR_003686	100113380		NR_003686	ENSG00000239127	SNORD125	-	small nucleolar RNA, C/D box 125	snoRNA
118134	chr19	34963821	34964980	+	0	NA	promoter-TSS (NM_175872)	promoter-TSS (NM_175872)	-171	NM_175872	126375		NM_175872	ENSG00000180884	ZNF792	-	zinc finger protein 792	protein-coding
209439	chr7	76395201	76395830	+	0	NA	intron (NM_080744, intron 6 of 10)	intron (NM_080744, intron 6 of 10)	-2007	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
199558	chr6	118886671	118887230	+	0	NA	intron (NM_001378357, intron 8 of 13)	AluJr|SINE|Alu	-7202	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
230304	chr9	127953571	127954400	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	-3271	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
37777	chr11	32323221	32323680	+	0	NA	Intergenic	AluSx|SINE|Alu	76950	NM_001367854	7490		NM_000378	ENSG00000184937	WT1	AWT1|GUD|NPHS4|WAGR|WIT-2|WT-1|WT33	WT1 transcription factor	protein-coding
139437	chr2	223726651	223726750	+	0	NA	Intergenic	Intergenic	110882	NM_001039569	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
106945	chr18	28176701	28177280	+	0	NA	exon (NM_001792, exon 1 of 16)	exon (NM_001792, exon 1 of 16)	140	NM_001792	1000		NM_001792	ENSG00000170558	CDH2	ACOGS|ADHD8|ARVD14|CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
104804	chr17	81741871	81742390	+	0	NA	Intergenic	Intergenic	29846	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
62828	chr13	109771801	109772680	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	14343	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
207637	chr7	45033051	45033630	+	0	NA	intron (NM_001029835, intron 1 of 9)	intron (NM_001029835, intron 1 of 9)	5706	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
137639	chr2	197390251	197390550	+	0	NA	3' UTR (NM_012433, exon 25 of 25)	3' UTR (NM_012433, exon 25 of 25)	44628	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
215591	chr7	158885571	158885730	+	0	NA	intron (NM_001350914, intron 6 of 24)	intron (NM_001350914, intron 6 of 24)	29092	NM_001350917	55112		NM_018051	ENSG00000126870	DYNC2I1	CFAP163|DIC6|FAP163|SRPS6|SRTD8|WDR60	dynein 2 intermediate chain 1	protein-coding
105090	chr17	82118201	82118750	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-20239	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
183825	chr5	83718271	83718450	+	0	NA	intron (NM_001884, intron 1 of 4)	intron (NM_001884, intron 1 of 4)	2495	NM_001884	1404		NM_001884	ENSG00000145681	HAPLN1	CRT1|CRTL1	hyaluronan and proteoglycan link protein 1	protein-coding
52234	chr12	54397351	54398030	+	0	NA	intron (NM_002205, intron 28 of 29)	intron (NM_002205, intron 28 of 29)	-6392	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
226432	chr9	71399221	71399300	+	0	NA	intron (NM_001366141, intron 1 of 24)	intron (NM_001366141, intron 1 of 24)	47711	NM_001366142	80036		NM_020952	ENSG00000083067	TRPM3	CTRCT50|GON-2|LTRPC3|MLSN2|NEDFSS	transient receptor potential cation channel subfamily M member 3	protein-coding
140108	chr2	231475871	231476150	+	0	NA	Intergenic	AluSz|SINE|Alu	-11526	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
132386	chr2	105777001	105777430	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	32152	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
160882	chr3	33712601	33713450	+	0	NA	intron (NM_001375705, intron 1 of 36)	AluSq2|SINE|Alu	5229	NM_001365628	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
134505	chr2	143380071	143380230	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	250731	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
66118	chr14	60094301	60094800	+	0	NA	intron (NM_022495, intron 1 of 9)	LTR46|LTR|ERV1	2627	NM_001330177	64430		NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex 4	protein-coding
11422	chr1	89728421	89728880	+	0	NA	Intergenic	Intergenic	-92382	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
186337	chr5	134737621	134738900	+	0	NA	promoter-TSS (NM_001745)	promoter-TSS (NM_001745)	-288	NM_001745	819		NM_001745	ENSG00000164615	CAMLG	CAML|CDG2Z|GET2	calcium modulating ligand	protein-coding
215417	chr7	157614701	157615130	+	0	NA	intron (NM_130842, intron 14 of 21)	intron (NM_130842, intron 14 of 21)	-40493	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
93133	chr17	17728771	17728930	+	0	NA	intron (NM_030665, intron 2 of 5)	MIRb|SINE|MIR	37452	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
151572	chr21	46605971	46606600	+	0	NA	Intergenic	Intergenic	-1203	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
206195	chr7	28190021	28190630	+	0	NA	intron (NR_034097, intron 2 of 3)	intron (NR_034097, intron 2 of 3)	-9530	NM_175061	221895		NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
229045	chr9	114331801	114333530	+	0	NA	intron (NM_000608, intron 5 of 5)	MIR|SINE|MIR	2796	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
12931	chr1	110669601	110670650	+	0	NA	intron (NR_109845, intron 1 of 2)	MIR|SINE|MIR	1650	NR_109846	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
46908	chr11	134225321	134226450	+	0	NA	promoter-TSS (NM_001372070)	promoter-TSS (NM_001372070)	-424	NM_001372070	23310		NM_015261	ENSG00000151503	NCAPD3	CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6	non-SMC condensin II complex subunit D3	protein-coding
66811	chr14	64735071	64735230	+	0	NA	intron (NM_001308147, intron 12 of 16)	intron (NM_001308147, intron 12 of 16)	30726	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
174782	chr4	47915901	47916100	+	0	NA	intron (NR_125879, intron 1 of 2)	MIR|SINE|MIR	-1333	NM_001278623	152518		NM_152995	ENSG00000170448	NFXL1	CDZFP|HOZFP|OZFP|URCC5	nuclear transcription factor, X-box binding like 1	protein-coding
139896	chr2	230711851	230711950	+	0	NA	promoter-TSS (NM_016289)	promoter-TSS (NM_016289)	-942	NM_016289	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
194378	chr6	32984301	32985600	+	0	NA	Intergenic	Intergenic	11866	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
22364	chr1	217524671	217524950	+	0	NA	intron (NM_018040, intron 5 of 9)	SVA_D|Retroposon|SVA	106280	NM_001297754	55105		NM_018040	ENSG00000092978	GPATCH2	CT110|GPATC2|PPP1R30|Pfa1	G-patch domain containing 2	protein-coding
31194	chr10	91218451	91219130	+	0	NA	intron (NM_001257101, intron 1 of 9)	AluSx4|SINE|Alu	-1361	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
212819	chr7	130426251	130426950	+	0	NA	intron (NM_001257160, intron 2 of 2)	intron (NM_001257160, intron 2 of 2)	14416	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
8472	chr1	40798901	40799100	+	0	NA	intron (NM_172163, intron 1 of 12)	intron (NM_172163, intron 1 of 12)	15213	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
109108	chr18	80022721	80023300	+	0	NA	intron (NM_001305564, intron 1 of 2)	LTR25-int|LTR|ERV1	10926	NM_001305563	10907		NM_006701	ENSG00000141759	TXNL4A	BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD	thioredoxin like 4A	protein-coding
192532	chr6	25057221	25057630	+	0	NA	Intergenic	Intergenic	-15137	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
59757	chr13	30112801	30113600	+	0	NA	Intergenic	Intergenic	-4325	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
238442	chrX	151396451	151397880	+	0	NA	promoter-TSS (NM_001017980)	promoter-TSS (NM_001017980)	-20	NM_001017980	203547		NM_001017980	ENSG00000160131	VMA21	MEAX|XMEA	vacuolar ATPase assembly factor VMA21	protein-coding
26911	chr10	26456701	26456900	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	18459	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
194651	chr6	33613321	33614130	+	0	NA	Intergenic	Intergenic	-7597	NM_002224	3710		NM_002224	ENSG00000096433	ITPR3	CMT1J|IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding
148941	chr21	10122621	10123380	+	0	NA	Intergenic	GSATII|Satellite|centr	-290497	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
54020	chr12	75492071	75492530	+	0	NA	3' UTR (NM_007043, exon 10 of 10)	3' UTR (NM_007043, exon 10 of 10)	11545	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
78016	chr15	89854421	89854680	+	0	NA	intron (NR_023361, intron 5 of 6)	SVA_F|Retroposon|SVA	-3829	NR_049817	100847059		NR_049817	ENSG00000264966	MIR5094	-	microRNA 5094	ncRNA
88231	chr16	82133401	82134000	+	0	NA	Intergenic	AluJb|SINE|Alu	36524	NM_005792	10200		NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
84460	chr16	30446901	30447100	+	0	NA	Intergenic	L1ME3D|LINE|L1	-1126	NM_012248	22928		NM_012248	ENSG00000179918	SEPHS2	SPS2	selenophosphate synthetase 2	protein-coding
724	chr1	1437571	1438230	+	0	NA	intron (NM_022834, intron 2 of 2)	intron (NM_022834, intron 2 of 2)	2210	NM_022834	64856		NM_022834	ENSG00000179403	VWA1	HMNMYO|HMNR7|WARP	von Willebrand factor A domain containing 1	protein-coding
49892	chr12	39378601	39378800	+	0	NA	intron (NM_001378440, intron 1 of 36)	intron (NM_001378440, intron 1 of 36)	64420	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
56299	chr12	112404601	112405030	+	0	NA	TTS (NM_001024662)	TTS (NM_001024662)	4470	NM_001320139	6128		NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1|eL6	ribosomal protein L6	protein-coding
84108	chr16	29657021	29657480	+	0	NA	Intergenic	AluJr|SINE|Alu	-5700	NM_001030288	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
71345	chr14	105448301	105449450	+	0	NA	intron (NM_001203258, intron 3 of 20)	intron (NM_001203258, intron 3 of 20)	-24070	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
49923	chr12	39632671	39632930	+	0	NA	intron (NR_135051, intron 1 of 18)	Tigger3b|DNA|TcMar-Tigger	6617	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
57762	chr12	122982301	122982700	+	0	NA	TTS (NM_020845)	TTS (NM_020845)	2440	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
125841	chr2	24403321	24403600	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-42924	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
200203	chr6	131201071	131201300	+	0	NA	intron (NR_164834, intron 8 of 9)	intron (NR_164834, intron 8 of 9)	-49219	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
13996	chr1	120663571	120663950	+	0	NA	intron (NR_144516, intron 1 of 43)	L3|LINE|CR1	1676	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
194901	chr6	34695071	34695550	+	0	NA	promoter-TSS (NR_134625)	promoter-TSS (NR_134625)	-844	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
139868	chr2	230628051	230628350	+	0	NA	Intergenic	L2|LINE|L2	72329	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
210815	chr7	100879101	100879300	+	0	NA	intron (NM_015908, intron 2 of 19)	AluSx1|SINE|Alu	4097	NM_001128852	51593		NM_015908	ENSG00000087087	SRRT	ARS2|ASR2|serrate	serrate, RNA effector molecule	protein-coding
60657	chr13	42970721	42971200	+	0	NA	intron (NM_033255, intron 1 of 10)	LTR78|LTR|ERV1	21281	NM_033255	94240		NM_033255	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1	protein-coding
84801	chr16	31065801	31066400	+	0	NA	intron (NM_024706, intron 1 of 2)	intron (NM_024706, intron 1 of 2)	-1012	NM_001172670	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
69548	chr14	96517421	96518080	+	0	NA	intron (NM_001293628, intron 1 of 21)	AluSz|SINE|Alu	14885	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
158940	chr3	10145451	10146600	+	0	NA	intron (NM_001354723, intron 2 of 2)	MIRb|SINE|MIR	4247	NM_198156	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
84495	chr16	30494401	30494600	+	0	NA	intron (NM_002209, intron 12 of 30)	MIRb|SINE|MIR	-9419	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
168257	chr3	141413841	141415280	+	0	NA	intron (NM_001376186, intron 3 of 3)	MamGypsy2-I|LTR|Gypsy	11546	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
89864	chr16	89634921	89635180	+	0	NA	intron (NM_004413, intron 2 of 10)	intron (NM_004413, intron 2 of 10)	14453	NM_004413	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
38385	chr11	44747101	44747830	+	0	NA	intron (NM_130783, intron 1 of 9)	intron (NM_130783, intron 1 of 9)	20503	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
137701	chr2	197495351	197496080	+	0	NA	intron (NM_199440, intron 3 of 11)	AluJo|SINE|Alu	4125	NM_002156	3329		NM_002156	ENSG00000144381	HSPD1	CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13	heat shock protein family D (Hsp60) member 1	protein-coding
181772	chr5	50742221	50742880	+	0	NA	intron (NM_024615, intron 2 of 25)	L2b|LINE|L2	75136	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
172648	chr4	2590921	2591430	+	0	NA	intron (NM_001366318, intron 1 of 20)	intron (NM_001366318, intron 1 of 20)	-34257	NM_003704	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
218110	chr8	41487601	41487800	+	0	NA	Intergenic	AluSg|SINE|Alu	-2696	NM_001362979	51125		NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
22928	chr1	225939321	225939780	+	0	NA	exon (NM_003240, exon 3 of 4)	exon (NM_003240, exon 3 of 4)	1670	NM_003240	7044		NM_003240	ENSG00000143768	LEFTY2	EBAF|LEFTA|LEFTYA|TGFB4	left-right determination factor 2	protein-coding
119299	chr19	39828171	39829330	+	0	NA	TTS (NR_106777)	TTS (NR_106777)	1052	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
159219	chr3	12902801	12903700	+	0	NA	intron (NM_014869, intron 12 of 13)	intron (NM_014869, intron 12 of 13)	-18039	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
98580	chr17	47724351	47724450	+	0	NA	Intergenic	Intergenic	-8836	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
158696	chr3	5296551	5296650	+	0	NA	Intergenic	Intergenic	-46345	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
118616	chr19	36848451	36848550	+	0	NA	intron (NM_001242800, intron 1 of 4)	intron (NM_001242800, intron 1 of 4)	1767	NM_001242801	388536		NM_206894	ENSG00000197863	ZNF790	-	zinc finger protein 790	protein-coding
121157	chr19	46371371	46372100	+	0	NA	intron (NM_001204284, intron 2 of 11)	intron (NM_001204284, intron 2 of 11)	24648	NM_001204284	5536		NM_006247	ENSG00000011485	PPP5C	PP5|PPP5|PPT	protein phosphatase 5 catalytic subunit	protein-coding
50920	chr12	49331371	49332250	+	0	NA	TTS (NM_005480)	TTS (NM_005480)	5378	NM_001008223	338761		NM_001008223	ENSG00000186897	C1QL4	C1QTNF11|CTRP11	complement C1q like 4	protein-coding
145534	chr20	44135151	44136000	+	0	NA	intron (NM_020433, intron 2 of 5)	L2c|LINE|L2	51613	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
191250	chr6	5984171	5984530	+	0	NA	Intergenic	L2b|LINE|L2	19694	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
24313	chr1	236861551	236862050	+	0	NA	intron (NM_000254, intron 20 of 32)	intron (NM_000254, intron 20 of 32)	66508	NM_000254	4548		NM_000254	ENSG00000116984	MTR	HMAG|MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
232216	chr9	134368121	134368380	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-11045	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
175456	chr4	71419151	71419330	+	0	NA	intron (NM_003759, intron 4 of 22)	L1PA3|LINE|L1	80220	NM_003759	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
223860	chr9	108951	109600	+	0	NA	Intergenic	L2b|LINE|L2	9142	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
30508	chr10	79322551	79324080	+	0	NA	Intergenic	Intergenic	-24154	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
111686	chr19	4268701	4269200	+	0	NA	3' UTR (NM_018074, exon 8 of 8)	3' UTR (NM_018074, exon 8 of 8)	-10119	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
195777	chr6	40481701	40481900	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	103463	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
114006	chr19	10864221	10865280	+	0	NA	intron (NM_001136482, intron 6 of 6)	L2b|LINE|L2	-6803	NM_199141	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
48534	chr12	10210301	10210500	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2477	NM_001363598	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
211180	chr7	102592511	102593220	+	0	NA	intron (NM_001079877, intron 15 of 19)	intron (NM_001079877, intron 15 of 19)	-20244	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
130752	chr2	86810851	86811750	+	0	NA	Intergenic	Intergenic	-2904	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
55008	chr12	96368971	96369130	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	31389	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
91263	chr17	4003601	4004050	+	0	NA	TTS (NM_015113)	TTS (NM_015113)	26722	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
183547	chr5	80109801	80110400	+	0	NA	Intergenic	Intergenic	-26435	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
7062	chr1	31985471	31986380	+	0	NA	Intergenic	AluSx3|SINE|Alu	-27943	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
107563	chr18	48814901	48816100	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	127307	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
85120	chr16	34575921	34576600	+	0	NA	Intergenic	Intergenic	-194780	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
110583	chr19	2158171	2158480	+	0	NA	Intergenic	AluY|SINE|Alu	-5608	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
236691	chrX	77768821	77769630	+	0	NA	intron (NM_138270, intron 1 of 33)	intron (NM_138270, intron 1 of 33)	16991	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
134164	chr2	134245401	134246200	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-8272	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
101611	chr17	68189321	68189730	+	0	NA	Intergenic	AluY|SINE|Alu	-9135	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
217956	chr8	38230921	38232350	+	0	NA	promoter-TSS (NM_001362911)	promoter-TSS (NM_001362911)	50	NM_001362911	23259		NM_015214	ENSG00000085788	DDHD2	SAMWD1|SPG54|iPLA(1)gamma|iPLA1A|iPLA1gamma|p125B	DDHD domain containing 2	protein-coding
189130	chr5	170861801	170862380	+	0	NA	promoter-TSS (NM_022897)	promoter-TSS (NM_022897)	72	NM_022897	64901		NM_022897	ENSG00000204764	RANBP17	-	RAN binding protein 17	protein-coding
100833	chr17	64115571	64115730	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	14494	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
218069	chr8	38919501	38919700	+	0	NA	intron (NM_021623, intron 2 of 11)	intron (NM_021623, intron 2 of 11)	18254	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
179545	chr4	185096151	185096330	+	0	NA	intron (NR_147059, intron 7 of 8)	intron (NR_147059, intron 7 of 8)	44344	NR_147059	101928877		NR_147059	ENSG00000250754	LINC02436	-	long intergenic non-protein coding RNA 2436	ncRNA
40102	chr11	62803271	62803700	+	0	NA	exon (NM_001081491, exon 3 of 20)	exon (NM_001081491, exon 3 of 20)	1955	NM_001081491	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
19621	chr1	179959321	179959680	+	0	NA	intron (NM_014810, intron 1 of 37)	AluSx1|SINE|Alu	4690	NM_014810	9857		NM_014810	ENSG00000135837	CEP350	CAP350|GM133	centrosomal protein 350	protein-coding
163813	chr3	52435301	52435950	+	0	NA	exon (NM_020163, exon 16 of 16)	exon (NM_020163, exon 16 of 16)	9478	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
43017	chr11	73992871	73993030	+	0	NA	Intergenic	L1MB8|LINE|L1	-9748	NM_001381944	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
33089	chr10	110906601	110906800	+	0	NA	intron (NM_001243783, intron 1 of 2)	AluSz|SINE|Alu	8610	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
217606	chr8	29737151	29737880	+	0	NA	intron (NR_026765, intron 1 of 3)	intron (NR_026765, intron 1 of 3)	10594	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
102763	chr17	76282101	76283380	+	0	NA	intron (NM_032134, intron 7 of 18)	intron (NM_032134, intron 7 of 18)	17392	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
39262	chr11	57743671	57743980	+	0	NA	TTS (NM_001321335)	TTS (NM_001321335)	2334	NM_170746	280636		NM_170746	ENSG00000211450	SELENOH	C11orf31|C17orf10|SELH	selenoprotein H	protein-coding
94304	chr17	28742351	28742450	+	0	NA	3' UTR (NM_178170, exon 15 of 15)	3' UTR (NM_178170, exon 15 of 15)	-1611	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
117100	chr19	19174751	19175500	+	0	NA	intron (NR_027308, intron 5 of 11)	intron (NR_027308, intron 5 of 11)	-4862	NM_001367282	100271849		NM_001145785	ENSG00000213999	MEF2B	RSRFR2	myocyte enhancer factor 2B	protein-coding
99361	chr17	49906271	49906630	+	0	NA	Intergenic	Intergenic	-58433	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
122682	chr19	49886221	49886480	+	0	NA	intron (NM_024682, intron 13 of 16)	MIRc|SINE|MIR	-1825	NR_039905	100616314		NR_039905	ENSG00000284394	MIR4750	mir-4750	microRNA 4750	ncRNA
15502	chr1	150465701	150465900	+	0	NA	intron (NM_015203, intron 10 of 10)	AluSx|SINE|Alu	-21619	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
108681	chr18	76967271	76967710	+	0	NA	intron (NM_001306089, intron 30 of 30)	intron (NM_001306089, intron 30 of 30)	49565	NM_001025090	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
234333	chrX	14528851	14528950	+	0	NA	promoter-TSS (NM_002063)	promoter-TSS (NM_002063)	-398	NM_001118885	2742		NM_002063	ENSG00000101958	GLRA2	GLR|MRXSP	glycine receptor alpha 2	protein-coding
60912	chr13	46174871	46176030	+	0	NA	intron (NM_002298, intron 1 of 15)	MIRb|SINE|MIR	6727	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
149833	chr21	35030871	35031030	+	0	NA	intron (NM_001754, intron 2 of 8)	L1MA8|LINE|L1	8476	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
190909	chr6	2799821	2800480	+	0	NA	Intergenic	Intergenic	-29774	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
93880	chr17	21101071	21101430	+	0	NA	Intergenic	AluSp|SINE|Alu	-25678	NM_015510	25979		NM_015510	ENSG00000109016	DHRS7B	CGI-93|SDR32C1	dehydrogenase/reductase 7B	protein-coding
48115	chr12	7862651	7863430	+	0	NA	intron (NM_001286237, intron 1 of 9)	LTR12C|LTR|ERV1	9875	NM_001286236	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
183792	chr5	82139821	82140680	+	0	NA	intron (NM_031482, intron 3 of 7)	SVA_F|Retroposon|SVA	138104	NM_001025	6228		NM_001025	ENSG00000186468	RPS23	BTDD|MABAS|MCINS|PAMAS|S23|uS12	ribosomal protein S23	protein-coding
104210	chr17	80503571	80503790	+	0	NA	Intergenic	Intergenic	-27073	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
238711	chrX	154095071	154095700	+	0	NA	intron (NM_004992, intron 1 of 3)	intron (NM_004992, intron 1 of 3)	1584	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
160750	chr3	32509971	32510460	+	0	NA	Intergenic	Intergenic	-3826	NR_106753	102465247		NR_106753	ENSG00000276147	MIR548AY	hsa-mir-548ay	microRNA 548ay	ncRNA
62730	chr13	105552171	105552330	+	0	NA	Intergenic	Intergenic	-46569	NR_040247	282706		NM_172368	ENSG00000232307	DAOA-AS1	DAOA-AS|DAOAAS|G30	DAOA antisense RNA 1	ncRNA
114494	chr19	12765851	12766630	+	0	NA	exon (NM_001100176, exon 15 of 22)	exon (NM_001100176, exon 15 of 22)	9312	NM_001100176	29911		NM_013312	ENSG00000095066	HOOK2	HK2	hook microtubule tethering protein 2	protein-coding
154414	chr22	35333471	35333630	+	0	NA	intron (NR_156428, intron 9 of 13)	intron (NR_156428, intron 9 of 13)	-2090	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
83658	chr16	28323001	28323200	+	0	NA	3' UTR (NM_001024401, exon 4 of 4)	3' UTR (NM_001024401, exon 4 of 4)	30575	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
118962	chr19	38847371	38847530	+	0	NA	intron (NM_001005335, intron 1 of 12).2	intron (NM_001005335, intron 1 of 12).2	2536	NM_001533	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
3366	chr1	15608571	15608730	+	0	NA	Intergenic	AluSz|SINE|Alu	-8808	NM_032341	84301		NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
111263	chr19	3536521	3537330	+	0	NA	TTS (NM_001136197)	TTS (NM_001136197)	-2232	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
3481	chr1	15994301	15994860	+	0	NA	Intergenic	Intergenic	-9656	NM_178840	149563		NM_178840	ENSG00000183888	SRARP	C1orf64|ERRF	steroid receptor associated and regulated protein	protein-coding
103302	chr17	77873551	77874050	+	0	NA	Intergenic	Intergenic	10287	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
132501	chr2	106058401	106059480	+	0	NA	Intergenic	Intergenic	-6748	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
205672	chr7	23013171	23014730	+	0	NA	5' UTR (NM_032581, exon 1 of 11)	5' UTR (NM_032581, exon 1 of 11)	180	NM_032581	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
58153	chr12	124926051	124926300	+	0	NA	Intergenic	L2a|LINE|L2	10628	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
42354	chr11	68541921	68542550	+	0	NA	intron (NR_147971, intron 4 of 24)	L2a|LINE|L2	81483	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
43834	chr11	86955121	86956300	+	0	NA	promoter-TSS (NR_038905)	promoter-TSS (NR_038905)	89	NR_038905	100506368		NR_038905	ENSG00000246523	FZD4-DT	-	FZD4 divergent transcript	ncRNA
116796	chr19	18525821	18526400	+	0	NA	Intergenic	AluY|SINE|Alu	-4040	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
77737	chr15	85730001	85730900	+	0	NA	intron (NM_007200, intron 29 of 36)	intron (NM_007200, intron 29 of 36)	28275	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
68905	chr14	91353421	91353900	+	0	NA	intron (NM_001080414, intron 4 of 29)	intron (NM_001080414, intron 4 of 29)	64160	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
156716	chr22	41783971	41784330	+	0	NA	intron (NM_152513, intron 24 of 30)	intron (NM_152513, intron 24 of 30)	-16529	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
125223	chr2	10329471	10330490	+	0	NA	promoter-TSS (NM_001258357)	promoter-TSS (NM_001258357)	-183	NM_001258357	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
190659	chr5	181245771	181247730	+	0	NA	non-coding (NR_109909, exon 1 of 3)	non-coding (NR_109909, exon 1 of 3)	209	NR_109909	101928649		NR_109909	ENSG00000233937	CTC-338M12.4	-	uncharacterized LOC101928649	ncRNA
17039	chr1	156077601	156077800	+	0	NA	intron (NM_001093725, intron 1 of 1)	intron (NM_001093725, intron 1 of 1)	4765	NM_001093725	92312		NM_001093725	ENSG00000254726	MEX3A	MEX-3A|RKHD4|RNF162	mex-3 RNA binding family member A	protein-coding
125347	chr2	10877701	10877900	+	0	NA	promoter-TSS (NR_110575)	promoter-TSS (NR_110575)	-467	NR_110575	101929733		NR_110575	ENSG00000271952	LINC01954	-	long intergenic non-protein coding RNA 1954	ncRNA
39591	chr11	61294071	61295900	+	0	NA	exon (NM_152718, exon 1 of 20)	exon (NM_152718, exon 1 of 20)	331	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
174850	chr4	48651121	48651400	+	0	NA	intron (NM_015030, intron 3 of 63)	AluJo|SINE|Alu	129019	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
27897	chr10	41885351	41885450	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	482645	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
141822	chr20	365371	365530	+	0	NA	Intergenic	Intergenic	-15179	NM_021158	57761		NM_021158	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
21944	chr1	207876301	207876500	+	0	NA	Intergenic	Intergenic	34725	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
231781	chr9	132269801	132270230	+	0	NA	intron (NM_001351527, intron 24 of 25)	intron (NM_001351527, intron 24 of 25)	84841	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
64012	chr14	22499621	22500280	+	0	NA	Intergenic	Intergenic	-16991	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
102664	chr17	76081601	76082330	+	0	NA	exon (NM_180990, exon 8 of 9)	exon (NM_180990, exon 8 of 9)	2783	NM_180990	353174		NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding
28805	chr10	62199701	62200100	+	0	NA	intron (NM_145307, intron 10 of 11)	intron (NM_145307, intron 10 of 11)	68944	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
138185	chr2	202653851	202654230	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	19071	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
5269	chr1	25043151	25043250	+	0	NA	Intergenic	MER52A|LTR|ERV1	19697	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
146685	chr20	50523701	50524450	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	13692	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
28491	chr10	49943501	49944100	+	0	NA	intron (NR_158661, intron 2 of 16)	L2a|LINE|L2	1747	NR_158652	100652748		NM_001290117	ENSG00000204152	TIMM23B	-	translocase of inner mitochondrial membrane 23 homolog B	protein-coding
186516	chr5	138350121	138350850	+	0	NA	TTS (NM_001350195)	TTS (NM_001350195)	-2200	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
72965	chr15	40510901	40512400	+	0	NA	Intergenic	CpG	20900	NR_002208	359821		NR_002208		MRPL42P5	-	mitochondrial ribosomal protein L42 pseudogene 5	pseudo
155206	chr22	37843521	37844800	+	0	NA	promoter-TSS (NM_001363839)	promoter-TSS (NM_001363839)	174	NM_138797	129138		NM_138797	ENSG00000100124	ANKRD54	LIAR	ankyrin repeat domain 54	protein-coding
55173	chr12	100202551	100203680	+	0	NA	TTS (NR_135073)	TTS (NR_135073)	2300	NR_048569	64431		NM_022496	ENSG00000075089	ACTR6	ARP6|CDA12|HSPC281|MSTP136|hARP6|hARPX	actin related protein 6	protein-coding
204234	chr7	2541471	2542030	+	0	NA	non-coding (NR_146879, exon 8 of 15)	non-coding (NR_146879, exon 8 of 15)	13774	NR_146879	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
177917	chr4	131459521	131459780	+	0	NA	Intergenic	MER66C|LTR|ERV1	-305188	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
29638	chr10	71844051	71844550	+	0	NA	intron (NM_002778, intron 1 of 13)	L1ME3C|LINE|L1	6951	NM_002778	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
192905	chr6	27600121	27600380	+	0	NA	Intergenic	Intergenic	-93785	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
203754	chr7	1169471	1170450	+	0	NA	Intergenic	Intergenic	9175	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
6741	chr1	30714801	30715650	+	0	NA	exon (NM_002379, exon 6 of 8)	exon (NM_002379, exon 6 of 8)	-3547	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
81568	chr16	9132421	9133280	+	0	NA	Intergenic	Intergenic	41206	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
90816	chr17	2264701	2264930	+	0	NA	intron (NM_017575, intron 8 of 18)	AluSz|SINE|Alu	1370	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
67997	chr14	74953751	74954550	+	0	NA	intron (NM_001207012, intron 1 of 5)	MIR3|SINE|MIR	1614	NM_001293643	5228		NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
120470	chr19	44737301	44737700	+	0	NA	Intergenic	Intergenic	-11208	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
61844	chr13	76882501	76882700	+	0	NA	3' UTR (NM_138444, exon 1 of 1)	3' UTR (NM_138444, exon 1 of 1)	3805	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
186831	chr5	139406551	139406850	+	0	NA	Intergenic	Intergenic	-2611	NM_194296	202051		NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
153592	chr22	26903201	26903500	+	0	NA	promoter-TSS (NR_110540)	promoter-TSS (NR_110540)	58	NR_110540	101929539		NR_110540		LINC01422	-	long intergenic non-protein coding RNA 1422	ncRNA
80973	chr16	3913421	3913680	+	0	NA	Intergenic	Intergenic	-32837	NM_004380	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
113512	chr19	10107651	10108150	+	0	NA	TTS (NR_004381)	TTS (NR_004381)	249	NR_004381	692229		NR_004381	ENSG00000209645	SNORD105	U105	small nucleolar RNA, C/D box 105	snoRNA
85731	chr16	56660371	56660530	+	0	NA	Intergenic	Intergenic	2491	NM_005949	4494		NM_005949	ENSG00000198417	MT1F	MT1	metallothionein 1F	protein-coding
59277	chr13	24228171	24228330	+	0	NA	intron (NM_001166271, intron 2 of 12)	AluY|SINE|Alu	26189	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
197732	chr6	87146651	87146950	+	0	NA	Intergenic	Intergenic	-8765	NM_015021	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
81739	chr16	11356001	11356200	+	0	NA	Intergenic	Intergenic	10641	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
24235	chr1	236157721	236157980	+	0	NA	intron (NM_003272, intron 1 of 6)	L1ME3Cz|LINE|L1	15311	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
3155	chr1	12597251	12597550	+	0	NA	promoter-TSS (NM_001324370)	promoter-TSS (NM_001324370)	-787	NM_001324370	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
146418	chr20	49541701	49542500	+	0	NA	intron (NM_000961, intron 4 of 9)	L2a|LINE|L2	26037	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
131115	chr2	90296101	90296900	+	0	NA	Intergenic	(CCAAGCCAG)n|Simple_repeat|Simple_repeat	-658593	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
72990	chr15	40598051	40598350	+	0	NA	intron (NM_144508, intron 1 of 25)	AluSq2|SINE|Alu	3951	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
87145	chr16	69184971	69185330	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-1997	NM_006750	6645		NM_006750	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin beta 2	protein-coding
192655	chr6	26181701	26182100	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1861	NM_003523	8344		NM_003523	ENSG00000274290	H2BC6	H2B.h|H2B/h|H2BC10|H2BC4|H2BC7|H2BC8|H2BFH|HIST1H2BE|dJ221C16.8	H2B clustered histone 6	protein-coding
86002	chr16	57469951	57470050	+	0	NA	exon (NM_032940, exon 7 of 9)	exon (NM_032940, exon 7 of 9)	7321	NM_032940	5432		NM_002694	ENSG00000102978	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	RNA polymerase II subunit C	protein-coding
116768	chr19	18498371	18498630	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	23570	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
134932	chr2	151408951	151409050	+	0	NA	promoter-TSS (NM_001177665)	promoter-TSS (NM_001177665)	-902	NM_001177664	55183		NM_018151	ENSG00000080345	RIF1	-	replication timing regulatory factor 1	protein-coding
179827	chr5	468051	468150	+	0	NA	TTS (NM_007277)	TTS (NM_007277)	4865	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
37257	chr11	14646121	14646680	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	2596	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
84286	chr16	30077771	30078250	+	0	NA	intron (NM_001303507, intron 2 of 7)	intron (NM_001303507, intron 2 of 7)	2016	NM_001303507	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
95995	chr17	39199701	39201750	+	0	NA	5' UTR (NM_001330200, exon 1 of 6)	5' UTR (NM_001330200, exon 1 of 6)	402	NM_001330200	6143		NM_000981	ENSG00000108298	RPL19	L19|eL19	ribosomal protein L19	protein-coding
41605	chr11	66387071	66387230	+	0	NA	Intergenic	Intergenic	-14674	NM_001300868	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
204380	chr7	2981971	2982130	+	0	NA	intron (NM_001324281, intron 1 of 25)	L1ME1|LINE|L1	61817	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
203653	chr7	986001	986500	+	0	NA	intron (NM_017781, intron 4 of 8)	intron (NM_017781, intron 4 of 8)	3069	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
218363	chr8	43092901	43094400	+	0	NA	intron (NM_032237, intron 1 of 4)	CpG	135	NM_032237	84197		NM_032237	ENSG00000185900	POMK	MDDGA12|MDDGC12|SGK196	protein O-mannose kinase	protein-coding
42633	chr11	72242001	72242200	+	0	NA	intron (NM_005169, intron 1 of 2)	intron (NM_005169, intron 1 of 2)	2076	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
20812	chr1	201222821	201223180	+	0	NA	intron (NM_001367841, intron 21 of 24)	intron (NM_001367841, intron 21 of 24)	32176	NM_001367841	91156		NM_178275	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin like and fibronectin type III domain containing 1	protein-coding
54390	chr12	89892051	89892150	+	0	NA	Intergenic	Intergenic	-55593	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
165997	chr3	108125501	108126500	+	0	NA	intron (NR_110028, intron 1 of 2)	intron (NR_110028, intron 1 of 2)	179	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
84073	chr16	29599271	29599530	+	0	NA	promoter-TSS (NR_037451).2	promoter-TSS (NR_037451).2	-135	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
95960	chr17	39096421	39097700	+	0	NA	intron (NM_020405, intron 7 of 13)	intron (NM_020405, intron 7 of 13)	40041	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
203903	chr7	1497571	1497730	+	0	NA	intron (NM_001080453, intron 10 of 47)	CpG-25348	6739	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
104037	chr17	80132171	80132530	+	0	NA	Intergenic	AluSq2|SINE|Alu	14778	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
145086	chr20	38677001	38677200	+	0	NA	Intergenic	Intergenic	-47386	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
234039	chrX	3875721	3875980	+	0	NA	intron (NR_146581, intron 1 of 3)	intron (NR_146581, intron 1 of 3)	6463	NR_146578	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
156133	chr22	40114801	40115430	+	0	NA	intron (NM_001024843, intron 1 of 23)	Tigger19b|DNA|TcMar-Tigger	-62810	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
130880	chr2	87415351	87415800	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-39852	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
143775	chr20	32418951	32419050	+	0	NA	intron (NM_015338, intron 3 of 11)	AluSg|SINE|Alu	59935	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
19570	chr1	179145621	179145880	+	0	NA	intron (NM_007314, intron 1 of 11)	L2b|LINE|L2	-2674	NM_005158	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
124748	chr2	6913221	6914450	+	0	NA	intron (NR_033997, intron 4 of 4)	THE1B|LTR|ERVL-MaLR	-3577	NM_001349181	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
198423	chr6	106087571	106088800	+	0	NA	intron (NM_001198, intron 1 of 6)	intron (NM_001198, intron 1 of 6)	1849	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
54365	chr12	89712201	89712800	+	0	NA	TTS (NR_028138)	TTS (NR_028138)	-3134	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
17487	chr1	156721371	156721800	+	0	NA	TTS (NM_001303095)	TTS (NM_001303095)	6854	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
60151	chr13	39952451	39953030	+	0	NA	Intergenic	Intergenic	-229069	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
174978	chr4	49641721	49642030	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	655233	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
183568	chr5	80147101	80147500	+	0	NA	intron (NM_001174072, intron 9 of 11)	intron (NM_001174072, intron 9 of 11)	-63635	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
50422	chr12	47396571	47397900	+	0	NA	Intergenic	L1PA16|LINE|L1	-17773	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
186712	chr5	138979471	138980230	+	0	NA	intron (NM_022464, intron 7 of 9)	intron (NM_022464, intron 7 of 9)	104450	NM_001324008	1495		NM_001903	ENSG00000044115	CTNNA1	CAP102|MDBS2|MDPT2	catenin alpha 1	protein-coding
80062	chr16	1978201	1978800	+	0	NA	TTS (NM_001267721)	TTS (NM_001267721)	2969	NM_172168	124056		NM_144603	ENSG00000196408	NOXO1	P41NOX|P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28	NADPH oxidase organizer 1	protein-coding
9908	chr1	54404801	54405330	+	0	NA	intron (NM_145716, intron 1 of 17)	intron (NM_145716, intron 1 of 17)	1329	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
78193	chr15	90568271	90569180	+	0	NA	intron (NM_001042574, intron 2 of 14)	Tigger1|DNA|TcMar-Tigger	38802	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
33955	chr10	124637851	124637950	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-66128	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
137382	chr2	196201551	196202200	+	0	NA	intron (NM_001348768, intron 28 of 28)	intron (NM_001348768, intron 28 of 28)	-30297	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
40094	chr11	62795571	62795730	+	0	NA	intron (NM_006362, intron 17 of 20)	MIRb|SINE|MIR	-2879	NR_106769	102465257		NR_106769	ENSG00000274066	MIR6514	hsa-mir-6514|mir-6514	microRNA 6514	ncRNA
197536	chr6	78867271	78867990	+	0	NA	promoter-TSS (NM_001010844)	promoter-TSS (NM_001010844)	79	NM_001010844	134728		NM_001010844	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin 1 receptor associated kinase 1 binding protein 1	protein-coding
25280	chr10	6147021	6147280	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	902	NM_001282630	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
16077	chr1	153509571	153510130	+	0	NA	Intergenic	Intergenic	26141	NM_014624	6277		NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA|S10A6	S100 calcium binding protein A6	protein-coding
153796	chr22	29621821	29622280	+	0	NA	intron (NM_181830, intron 1 of 14)	intron (NM_181830, intron 1 of 14)	18417	NM_181829	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
113716	chr19	10452901	10453550	+	0	NA	5' UTR (NM_006202, exon 1 of 10)	5' UTR (NM_006202, exon 1 of 10)	293	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
214862	chr7	151369971	151370130	+	0	NA	intron (NM_001385361, intron 11 of 13)	intron (NM_001385361, intron 11 of 13)	28238	NM_016118	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
178106	chr4	140711201	140711800	+	0	NA	intron (NM_015130, intron 1 of 20)	intron (NM_015130, intron 1 of 20)	44885	NM_015130	23158		NM_015130	ENSG00000109436	TBC1D9	GRAMD9|MDR1	TBC1 domain family member 9	protein-coding
143466	chr20	31052601	31053150	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-204789	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
92011	chr17	7459871	7460650	+	0	NA	3' UTR (NM_001128833, exon 4 of 4).2	3' UTR (NM_001128833, exon 4 of 4).2	15199	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
60858	chr13	45669551	45669850	+	0	NA	Intergenic	L1PA3|LINE|L1	31484	NR_125786	103752581		NR_125786		LINC01055	-	long intergenic non-protein coding RNA 1055	ncRNA
135692	chr2	168879821	168880080	+	0	NA	intron (NM_020675, intron 3 of 6)	Tigger1|DNA|TcMar-Tigger	10480	NM_020675	57405		NM_020675	ENSG00000152253	SPC25	AD024|SPBC25|hSpc25	SPC25 component of NDC80 kinetochore complex	protein-coding
23673	chr1	231340321	231340580	+	0	NA	intron (NM_001261462, intron 2 of 2)	MIRc|SINE|MIR	2157	NM_032018	83932		NM_032018	ENSG00000010072	SPRTN	C1orf124|DVC1|PRO4323|spartan	SprT-like N-terminal domain	protein-coding
82139	chr16	14765051	14765150	+	0	NA	exon (NM_001277323, exon 8 of 8).2	exon (NM_001277323, exon 8 of 8).2	14287	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
89	chr1	353801	354200	+	0	NA	Intergenic	Intergenic	97678	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
76779	chr15	77007171	77007630	+	0	NA	intron (NR_135552, intron 1 of 11)	AluJb|SINE|Alu	12274	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
119026	chr19	38924251	38925350	+	0	NA	intron (NM_001145901, intron 2 of 16).2	AluJo|SINE|Alu	5963	NM_017827	54938		NM_017827	ENSG00000104835	SARS2	SARS|SARSM|SERS|SYS|SerRS|SerRSmt|mtSerRS	seryl-tRNA synthetase 2, mitochondrial	protein-coding
197811	chr6	87718671	87719330	+	0	NA	Intergenic	Intergenic	-16767	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
43140	chr11	75281771	75281930	+	0	NA	intron (NM_020251, intron 6 of 14)	intron (NM_020251, intron 6 of 14)	41076	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
181549	chr5	43110671	43111530	+	0	NA	Intergenic	L1MDa|LINE|L1	-9814	NM_001330704	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
172667	chr4	2725001	2725800	+	0	NA	intron (NM_001256668, intron 19 of 19)	AluJr|SINE|Alu	30936	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
63295	chr13	113979571	113980500	+	0	NA	intron (NM_001320822, intron 23 of 23).2	intron (NM_001320822, intron 23 of 23).2	-5959	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
84962	chr16	31403721	31404180	+	0	NA	intron (NM_001318185, intron 7 of 29)	MIRb|SINE|MIR	10615	NM_001318185	3681		NM_005353	ENSG00000156886	ITGAD	ADB2|CD11D	integrin subunit alpha D	protein-coding
212420	chr7	128236721	128237200	+	0	NA	Intergenic	Intergenic	-4318	NM_000230	3952		NM_000230	ENSG00000174697	LEP	LEPD|OB|OBS	leptin	protein-coding
164637	chr3	66472321	66474100	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	26844	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
88557	chr16	85528871	85529550	+	0	NA	Intergenic	Intergenic	-82199	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
166893	chr3	124621571	124621730	+	0	NA	intron (NM_001322999, intron 1 of 14)	intron (NM_001322999, intron 1 of 14)	36991	NM_001322997	8997		NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|KALNC2|TRAD	kalirin RhoGEF kinase	protein-coding
89374	chr16	88790471	88792780	+	0	NA	Intergenic	Intergenic	-6405	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
19329	chr1	173532271	173532650	+	0	NA	intron (NM_178527, intron 17 of 27)	intron (NM_178527, intron 17 of 27)	55125	NM_004905	9588		NM_004905	ENSG00000117592	PRDX6	1-Cys|AOP2|HEL-S-128m|LPCAT-5|NSGPx|PRX|aiPLA2|p29	peroxiredoxin 6	protein-coding
139847	chr2	230467171	230467530	+	0	NA	intron (NM_001080391, intron 13 of 28)	intron (NM_001080391, intron 13 of 28)	50594	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
209849	chr7	90243651	90243900	+	0	NA	Intergenic	MER49|LTR|ERV1	-1399	NM_001160138	79846		NM_024788	ENSG00000105792	CFAP69	C7orf63|FAP69|SPGF24	cilia and flagella associated protein 69	protein-coding
192360	chr6	24655321	24655580	+	0	NA	intron (NM_016614, intron 4 of 6)	HAL1|LINE|L1	-9259	NM_001350407	9856		NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
77571	chr15	84985771	84985930	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	3876	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
62974	chr13	112294501	112294900	+	0	NA	Intergenic	Intergenic	-18767	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
44994	chr11	116980001	116980800	+	0	NA	intron (NM_001281748, intron 1 of 24)	MER107|DNA|hAT-Charlie	118028	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
63260	chr13	113950951	113951730	+	0	NA	Intergenic	Intergenic	-22349	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
123159	chr19	52198321	52198580	+	0	NA	intron (NR_033500, intron 1 of 13)	MER21A|LTR|ERVL	-2746	NM_001363656	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
33437	chr10	119023301	119023700	+	0	NA	Intergenic	Intergenic	-6214	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
96028	chr17	39396471	39396830	+	0	NA	intron (NM_001370208, intron 1 of 14)	MIR3|SINE|MIR	4976	NM_032875	84961		NM_032875	ENSG00000108306	FBXL20	Fbl2|Fbl20	F-box and leucine rich repeat protein 20	protein-coding
99669	chr17	50727801	50728200	+	0	NA	intron (NM_001330330, intron 1 of 10)	AluY|SINE|Alu	8397	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
207930	chr7	50761821	50762080	+	0	NA	intron (NM_001001555, intron 1 of 16)	MSTA|LTR|ERVL-MaLR	20946	NM_001350814	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
198231	chr6	98937671	98938230	+	0	NA	intron (NM_001278716, intron 1 of 9)	Tigger2|DNA|TcMar-Tigger	9996	NM_001278716	26235		NM_012160	ENSG00000112234	FBXL4	FBL4|FBL5|MTDPS13	F-box and leucine rich repeat protein 4	protein-coding
226842	chr9	77977201	77977680	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	54371	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
45456	chr11	118513701	118514330	+	0	NA	intron (NR_120574, intron 2 of 2)	intron (NR_120574, intron 2 of 2)	-13459	NM_001346097	143941		NM_001080441	ENSG00000172425	TTC36	HBP21	tetratricopeptide repeat domain 36	protein-coding
199921	chr6	127883501	127883900	+	0	NA	intron (NM_001164687, intron 1 of 5).2	MER47A|DNA|TcMar-Tigger	17381	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
237212	chrX	109054201	109054400	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-317737	NM_001379150	8471		NM_003604	ENSG00000133124	IRS4	CHNG9|IRS-4|PY160	insulin receptor substrate 4	protein-coding
22874	chr1	225779921	225780350	+	0	NA	intron (NM_001130440, intron 1 of 3)	AluJr|SINE|Alu	2309	NM_003133	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
45305	chr11	118150801	118151400	+	0	NA	intron (NM_174934, intron 1 of 4)	intron (NM_174934, intron 1 of 4)	1723	NM_001142348	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
168081	chr3	138185171	138185330	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-1998	NM_213654	25852		NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
24058	chr1	235306351	235306450	+	0	NA	intron (NM_016374, intron 2 of 23)	AluSc8|SINE|Alu	-20816	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
77620	chr15	85404201	85404800	+	0	NA	intron (NM_007200, intron 1 of 36)	L2b|LINE|L2	23897	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
99003	chr17	48753771	48754330	+	0	NA	Intergenic	Intergenic	-25300	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
165979	chr3	108079851	108080530	+	0	NA	exon (NM_001382306, exon 2 of 10)	exon (NM_001382306, exon 2 of 10)	10841	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
221956	chr8	129943421	129943880	+	0	NA	intron (NM_001353279, intron 2 of 13)	AluYi6|SINE|Alu	-3839	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
237983	chrX	134374301	134374880	+	0	NA	intron (NM_032335, intron 1 of 7)	intron (NM_032335, intron 1 of 7)	1278	NM_032335	84295		NM_032335	ENSG00000156531	PHF6	BFLS|BORJ|CENP-31	PHD finger protein 6	protein-coding
11920	chr1	93447721	93449450	+	0	NA	intron (NM_001164473, intron 1 of 16)	CpG	454	NM_001164473	54874		NM_017737	ENSG00000137942	FNBP1L	C1orf39|TOCA1	formin binding protein 1 like	protein-coding
139525	chr2	224574171	224574950	+	0	NA	intron (NM_003590, intron 1 of 15)	intron (NM_003590, intron 1 of 15)	-4605	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
48476	chr12	9773171	9773780	+	0	NA	Intergenic	Intergenic	-12574	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
86194	chr16	57988171	57988330	+	0	NA	TTS (NM_199046)	TTS (NM_199046)	-11353	NM_001330568	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
5792	chr1	26543771	26544550	+	0	NA	intron (NM_001330441, intron 1 of 20)	intron (NM_001330441, intron 1 of 20)	1048	NM_001330441	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
85577	chr16	53486051	53486600	+	0	NA	intron (NM_001323609, intron 20 of 20)	L1MC|LINE|L1	16884	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
161011	chr3	37779601	37779830	+	0	NA	intron (NM_002207, intron 24 of 27)	intron (NM_002207, intron 24 of 27)	82065	NR_110532	101928153		NR_110531	ENSG00000235257	ITGA9-AS1	-	ITGA9 antisense RNA 1	ncRNA
39986	chr11	62618071	62618230	+	0	NA	intron (NM_001288722, intron 2 of 4)	AluSq2|SINE|Alu	3836	NM_001288722	26229		NM_012200	ENSG00000149541	B3GAT3	GLCATI|JDSCD|glcUAT-I	beta-1,3-glucuronyltransferase 3	protein-coding
104128	chr17	80359851	80360150	+	0	NA	intron (NM_001256071, intron 37 of 67)	intron (NM_001256071, intron 37 of 67)	-55167	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
68229	chr14	76933001	76933400	+	0	NA	Intergenic	Intergenic	-26438	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
74350	chr15	58622871	58623630	+	0	NA	intron (NM_001320570, intron 9 of 14)	intron (NM_001320570, intron 9 of 14)	70357	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
220503	chr8	100576821	100577080	+	0	NA	intron (NM_001363720, intron 10 of 10)	intron (NM_001363720, intron 10 of 10)	-17191	NM_001270377	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
113133	chr19	8323621	8324330	+	0	NA	TTS (NM_001031)	TTS (NM_001031)	2479	NM_001031	6234		NM_001031	ENSG00000233927	RPS28	DBA15|S28|eS28	ribosomal protein S28	protein-coding
151749	chr22	17820271	17820430	+	0	NA	intron (NM_015241, intron 25 of 31)	intron (NM_015241, intron 25 of 31)	43060	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
221606	chr8	125529901	125530300	+	0	NA	Intergenic	MIR3|SINE|MIR	97891	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
46162	chr11	123069851	123070200	+	0	NA	3' UTR (NM_024769, exon 7 of 7)	3' UTR (NM_024769, exon 7 of 7)	-7889	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
107914	chr18	57581171	57581600	+	0	NA	intron (NM_001371094, intron 1 of 9)	intron (NM_001371094, intron 1 of 9)	5317	NM_001371095	2235		NM_000140	ENSG00000066926	FECH	EPP|EPP1|FCE	ferrochelatase	protein-coding
15706	chr1	151005221	151005580	+	0	NA	intron (NM_001376670, intron 1 of 8)	AluSx1|SINE|Alu	1502	NM_001040217	55793		NM_018379	ENSG00000143409	MINDY1	FAM63A|MINDY-1	MINDY lysine 48 deubiquitinase 1	protein-coding
121100	chr19	45924001	45924400	+	0	NA	Intergenic	AluY|SINE|Alu	-9422	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
140824	chr2	236549221	236549580	+	0	NA	Intergenic	Intergenic	-20425	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
18723	chr1	167462171	167462980	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	55954	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
224086	chr9	4340601	4341430	+	0	NA	Intergenic	Intergenic	-40947	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
191207	chr6	5517651	5518380	+	0	NA	intron (NM_001374875, intron 4 of 6)	L2|LINE|L2	-59940	NR_125848	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
62627	chr13	100674301	100676300	+	0	NA	promoter-TSS (NM_001079669)	promoter-TSS (NM_001079669)	-505	NM_001350576	84899		NM_032813	ENSG00000125247	TMTC4	DFNB122	transmembrane O-mannosyltransferase targeting cadherins 4	protein-coding
238832	chrX	154443651	154445030	+	0	NA	TTS (NM_001493)	TTS (NM_001493)	199	NM_004699	9130		NM_004699	ENSG00000071859	FAM50A	9F|DXS9928E|HXC-26|HXC26|MRXSA|XAP5	family with sequence similarity 50 member A	protein-coding
61130	chr13	48561001	48561680	+	0	NA	Intergenic	Intergenic	19561	NR_051983	100129597		NR_051983	ENSG00000233610	LINC00462	-	long intergenic non-protein coding RNA 462	ncRNA
20958	chr1	202315301	202315880	+	0	NA	intron (NM_021636, intron 17 of 17)	intron (NM_021636, intron 17 of 17)	26346	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
174301	chr4	38511021	38511280	+	0	NA	intron (NR_149076, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	1383	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
183596	chr5	80195421	80195680	+	0	NA	intron (NM_001174072, intron 2 of 11)	intron (NM_001174072, intron 2 of 11)	60498	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
18188	chr1	160834771	160835650	+	0	NA	intron (NM_001166664, intron 5 of 7)	intron (NM_001166664, intron 5 of 7)	27677	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
174034	chr4	26861401	26862700	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	1209	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
168200	chr3	141228501	141228700	+	0	NA	Intergenic	Intergenic	-3225	NM_152282	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
181988	chr5	55222101	55222650	+	0	NA	exon (NM_001190787, exon 5 of 7)	exon (NM_001190787, exon 5 of 7)	4940	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
162064	chr3	46859271	46859630	+	0	NA	intron (NM_000258, intron 4 of 6)	intron (NM_000258, intron 4 of 6)	3994	NM_000258	4634		NM_000258	ENSG00000160808	MYL3	CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl	myosin light chain 3	protein-coding
52950	chr12	57457121	57457680	+	0	NA	3' UTR (NM_031479, exon 2 of 2)	3' UTR (NM_031479, exon 2 of 2)	2093	NM_031479	83729		NM_031479	ENSG00000139269	INHBE	-	inhibin subunit beta E	protein-coding
185202	chr5	119411721	119412400	+	0	NA	Intergenic	Intergenic	-40437	NM_001199291	3295		NM_000414	ENSG00000133835	HSD17B4	DBP|MFE-2|MFP-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid 17-beta dehydrogenase 4	protein-coding
116592	chr19	18258621	18260300	+	0	NA	intron (NM_001145305, intron 3 of 3)	intron (NM_001145305, intron 3 of 3)	-4041	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
156512	chr22	41374951	41375250	+	0	NA	intron (NM_001145398, intron 1 of 3)	intron (NM_001145398, intron 1 of 3)	-6842	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
125431	chr2	11828921	11829580	+	0	NA	Intergenic	Intergenic	7736	NR_036226	100422996		NR_036226	ENSG00000265172	MIR4262	-	microRNA 4262	ncRNA
153768	chr22	29528321	29528580	+	0	NA	exon (NM_001002878, exon 11 of 21)	exon (NM_001002878, exon 11 of 21)	25205	NM_001002878	8563		NM_003678	ENSG00000100296	THOC5	C22orf19|Fmip|PK1.3|fSAP79	THO complex subunit 5	protein-coding
12045	chr1	98049271	98049530	+	0	NA	non-coding (NR_046105, exon 1 of 5)	non-coding (NR_046105, exon 1 of 5)	293	NR_046105	400765		NM_001001688	ENSG00000225206	MIR137HG	-	MIR137 host gene	ncRNA
66242	chr14	61343971	61345630	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	23357	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
143498	chr20	31460371	31460780	+	0	NA	Intergenic	AluSz|SINE|Alu	12438	NM_001037500	245937		NM_001037500	ENSG00000180383	DEFB124	DEFB-24	defensin beta 124	protein-coding
127263	chr2	38706771	38706930	+	0	NA	intron (NM_138801, intron 4 of 6)	FLAM_A|SINE|Alu	40736	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
7265	chr1	32363501	32364230	+	0	NA	TTS (NM_001143888)	TTS (NM_001143888)	1326	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
188918	chr5	160399471	160400230	+	0	NA	5' UTR (NM_022090, exon 1 of 2)	5' UTR (NM_022090, exon 1 of 2)	204	NM_022090	63920		NM_022090	ENSG00000221886	FAM200C	Buster3|C5orf54|ZBED8	family with sequence similarity 200 member C	protein-coding
184058	chr5	91479471	91479900	+	0	NA	Intergenic	L2a|LINE|L2	-96368	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
18881	chr1	168148971	168149130	+	0	NA	Intergenic	Intergenic	-11383	NM_001349633	23432		NM_007369	ENSG00000143147	GPR161	RE2	G protein-coupled receptor 161	protein-coding
158647	chr3	5002351	5003200	+	0	NA	Intergenic	Intergenic	-22814	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
47832	chr12	6599171	6599330	+	0	NA	intron (NM_001273, intron 10 of 39)	AluJr4|SINE|Alu	7201	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
109824	chr19	1172301	1172500	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	1868	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
57566	chr12	122227101	122228530	+	0	NA	promoter-TSS (NM_019887)	promoter-TSS (NM_019887)	-359	NM_019887	56616		NM_019887	ENSG00000184047	DIABLO	DFNA64|SMAC	diablo IAP-binding mitochondrial protein	protein-coding
53764	chr12	68674571	68674730	+	0	NA	non-coding (NR_038930, exon 3 of 3)	non-coding (NR_038930, exon 3 of 3)	12209	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
97919	chr17	45142171	45142650	+	0	NA	intron (NM_001135705, intron 9 of 9)	AluSx1|SINE|Alu	-6065	NM_006460	10614		NM_006460	ENSG00000186834	HEXIM1	CLP1|EDG1|HIS1|MAQ1	HEXIM P-TEFb complex subunit 1	protein-coding
124767	chr2	7046271	7046430	+	0	NA	intron (NM_001349181, intron 8 of 9)	intron (NM_001349181, intron 8 of 9)	31530	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
112059	chr19	5149771	5149930	+	0	NA	intron (NM_015015, intron 21 of 22)	intron (NM_015015, intron 21 of 22)	180737	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
149443	chr21	31509051	31509880	+	0	NA	intron (NM_001353688, intron 1 of 29)	intron (NM_001353688, intron 1 of 29)	49622	NM_001353689	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
79797	chr16	1393751	1394150	+	0	NA	intron (NM_001372107, intron 7 of 14)	intron (NM_001372107, intron 7 of 14)	-14298	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
73477	chr15	43591151	43591400	+	0	NA	Intergenic	AluJb|SINE|Alu	-1022	NM_001354396	9677		NM_014659	ENSG00000168781	PPIP5K1	HISPPD2A|IP6K|IPS1|VIP1|hsVIP1	diphosphoinositol pentakisphosphate kinase 1	protein-coding
203115	chr6	166586721	166586980	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	40401	NM_021135	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
29837	chr10	72333551	72334000	+	0	NA	non-coding (NR_157570, exon 9 of 9)	non-coding (NR_157570, exon 9 of 9)	21144	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
24126	chr1	235802001	235802200	+	0	NA	intron (NM_001301365, intron 8 of 52)	AluSg|SINE|Alu	50960	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
28780	chr10	62056101	62056500	+	0	NA	intron (NM_001244638, intron 2 of 6)	intron (NM_001244638, intron 2 of 6)	6943	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
54875	chr12	95652471	95652900	+	0	NA	intron (NR_077225, intron 1 of 4)	AluJo|SINE|Alu	3430	NR_077225	100132594		NR_077225	ENSG00000293270	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
122339	chr19	49198901	49199500	+	0	NA	intron (NM_001321282, intron 16 of 23)	L1ME3G|LINE|L1	41408	NM_001321283	54795		NM_017636	ENSG00000130529	TRPM4	EKVP6|LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
30346	chr10	77710121	77710550	+	0	NA	Intergenic	Intergenic	-72527	NM_001322836	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
136175	chr2	174484471	174485000	+	0	NA	intron (NM_001033045, intron 1 of 16)	AluJb|SINE|Alu	2294	NM_001267050	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
19099	chr1	171484801	171485700	+	0	NA	promoter-TSS (NM_015172)	promoter-TSS (NM_015172)	-280	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
141478	chr2	241081301	241081700	+	0	NA	intron (NR_138463, intron 6 of 6)	intron (NR_138463, intron 6 of 6)	20787	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
197084	chr6	56851621	56852080	+	0	NA	promoter-TSS (NM_001144770)	promoter-TSS (NM_001144770)	55	NM_001144770	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
148675	chr21	6138271	6139780	+	0	NA	Intergenic	CpG	27894	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
174807	chr4	48124071	48124430	+	0	NA	intron (NM_003328, intron 1 of 14)	MER20|DNA|hAT-Charlie	10000	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
190898	chr6	2774101	2774500	+	0	NA	intron (NM_020135, intron 3 of 6)	MLT1B|LTR|ERVL-MaLR	-3924	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
37531	chr11	18632821	18633500	+	0	NA	intron (NM_194285, intron 1 of 5)	intron (NM_194285, intron 1 of 5)	1182	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
180673	chr5	18749871	18750030	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	942676	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
170309	chr3	184341751	184342050	+	0	NA	intron (NM_144635, intron 3 of 5)	intron (NM_144635, intron 3 of 5)	3067	NM_001366133	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
209876	chr7	91082901	91083100	+	0	NA	intron (NM_012395, intron 11 of 13)	intron (NM_012395, intron 11 of 13)	-181433	NM_003505	8321		NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
96398	chr17	40137821	40138700	+	0	NA	Intergenic	Intergenic	-2277	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
208753	chr7	73531151	73531650	+	0	NA	Intergenic	AluY|SINE|Alu	-9107	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
132628	chr2	108623801	108624200	+	0	NA	intron (NM_001371500, intron 1 of 2)	intron (NM_001371500, intron 1 of 2)	2749	NM_001371500	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
131754	chr2	98462501	98462700	+	0	NA	intron (NM_001351429, intron 1 of 23)	AluJb|SINE|Alu	16590	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
1807	chr1	6205841	6206700	+	0	NA	promoter-TSS (NR_125997)	promoter-TSS (NR_125997)	151	NM_207396	388591		NM_173795	ENSG00000158286	RNF207	C1orf188	ring finger protein 207	protein-coding
218228	chr8	42041151	42041600	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-10375	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
95462	chr17	36184951	36185250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8476	NM_001001417	414059		NM_001001417	ENSG00000274808	TBC1D3B	PRC17|TBC1D3I|TBC1D3L	TBC1 domain family member 3B	protein-coding
181576	chr5	43245821	43246150	+	0	NA	exon (NM_153361, exon 2 of 4)	exon (NM_153361, exon 2 of 4)	53133	NR_072980	167359		NM_153361	ENSG00000177453	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
63486	chr13	114167401	114168000	+	0	NA	Intergenic	MER57A1|LTR|ERV1	-35077	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
21983	chr1	209685971	209686700	+	0	NA	intron (NM_181755, intron 1 of 6)	intron (NM_181755, intron 1 of 6)	155	NM_181755	3290		NM_005525	ENSG00000117594	HSD11B1	11-DH|11-beta-HSD1|CORTRD2|HDL|HSD11|HSD11B|HSD11L|SDR26C1	hydroxysteroid 11-beta dehydrogenase 1	protein-coding
160707	chr3	32400351	32400750	+	0	NA	intron (NM_138410, intron 1 of 4)	AluSc8|SINE|Alu	8697	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
219938	chr8	87327251	87327350	+	0	NA	intron (NM_173538, intron 8 of 10)	L1PA2|LINE|L1	460885	NM_173538	168975		NM_173538	ENSG00000176571	CNBD1	-	cyclic nucleotide binding domain containing 1	protein-coding
117157	chr19	19326721	19327030	+	0	NA	intron (NM_015329, intron 1 of 18)	AluJo|SINE|Alu	6046	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
31002	chr10	88387221	88387880	+	0	NA	intron (NM_018363, intron 4 of 6)	intron (NM_018363, intron 4 of 6)	195768	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
125396	chr2	11482221	11482480	+	0	NA	Intergenic	CpG	-16173	NM_001278278	1876		NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
8655	chr1	41805771	41806390	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	112842	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
82906	chr16	21644001	21644200	+	0	NA	intron (NM_005849, intron 3 of 5).2	intron (NM_005849, intron 3 of 5).2	8508	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
193424	chr6	30460351	30461080	+	0	NA	Intergenic	Intergenic	-28794	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
100443	chr17	61358871	61359050	+	0	NA	intron (NM_001353144, intron 24 of 25)	intron (NM_001353144, intron 24 of 25)	8744	NR_136397	101927855		NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
36739	chr11	9266521	9267180	+	0	NA	Intergenic	Intergenic	-1500	NM_015213	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
116747	chr19	18476121	18476700	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	-38277	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
20241	chr1	193417301	193417880	+	0	NA	Intergenic	AluJb|SINE|Alu	112845	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
131903	chr2	98769651	98770290	+	0	NA	intron (NR_126337, intron 1 of 3)	intron (NR_126337, intron 1 of 3)	1928	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
212952	chr7	130946871	130947030	+	0	NA	intron (NR_109853, intron 4 of 5)	L1ME4a|LINE|L1	33486	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
124510	chr2	18251	18930	+	0	NA	Intergenic	Intergenic	27915	NM_001077710	642273		NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
94122	chr17	28174401	28174930	+	0	NA	intron (NM_016231, intron 7 of 10)	intron (NM_016231, intron 7 of 10)	-51898	NR_003064	23615		NM_021093	ENSG00000290671	PYY2	-	peptide YY 2 (pseudogene)	pseudo
106358	chr18	13220551	13220850	+	0	NA	intron (NM_001378100, intron 1 of 6)	intron (NM_001378100, intron 1 of 6)	1940	NM_001378100	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
208904	chr7	73889371	73889530	+	0	NA	Intergenic	AluSz|SINE|Alu	28291	NM_182504	135886		NM_182504	ENSG00000175877	TMEM270	WBSCR28	transmembrane protein 270	protein-coding
6180	chr1	27435501	27435700	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	42978	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
105523	chr17	83116251	83116350	+	0	NA	Intergenic	Intergenic	35154	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
213364	chr7	135811121	135811380	+	0	NA	Intergenic	Intergenic	-62437	NM_001369697	389558		NM_205855	ENSG00000189320	FAM180A	UNQ1940	family with sequence similarity 180 member A	protein-coding
138202	chr2	202673721	202673980	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	38881	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
130556	chr2	85702381	85703100	+	0	NA	Intergenic	L1M4b|LINE|L1	8382	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
29014	chr10	63554451	63555030	+	0	NA	intron (NM_001001330, intron 1 of 7)	MIRc|SINE|MIR	-32850	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
40324	chr11	63911501	63912100	+	0	NA	TTS (NM_017490)	TTS (NM_017490)	5364	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
192113	chr6	16731151	16732680	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	28269	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
135918	chr2	171553871	171554200	+	0	NA	intron (NM_001256909, intron 3 of 3)	MER51A|LTR|ERV1	31561	NM_024843	79901		NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
131653	chr2	97649851	97650180	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	3953	NM_001862	1329		NM_001862	ENSG00000135940	COX5B	COXVB	cytochrome c oxidase subunit 5B	protein-coding
127686	chr2	43201171	43201530	+	0	NA	Intergenic	Intergenic	25256	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
13581	chr1	116166671	116167050	+	0	NA	Intergenic	Intergenic	55105	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
72492	chr15	32657271	32657830	+	0	NA	intron (NM_001144757, intron 2 of 5).3	intron (NM_001144757, intron 2 of 5).3	15515	NR_135505	105370757		NR_135505	ENSG00000241818	SCG5-AS1	-	SCG5 antisense RNA 1	ncRNA
498	chr1	1181751	1182050	+	0	NA	intron (NM_001371649, intron 9 of 15)	intron (NM_001371649, intron 9 of 15)	2219	NM_153254	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
235070	chrX	40168051	40168580	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	8962	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
208654	chr7	73080151	73080250	+	0	NA	intron (NM_001382563, intron 4 of 6).3	intron (NM_001382563, intron 4 of 6).3	4491	NM_001382563	105180390		NM_001382563	ENSG00000286038	SPDYE13	SPDYE13P	speedy/RINGO cell cycle regulator family member E13	protein-coding
212602	chr7	129136871	129137630	+	0	NA	Intergenic	Intergenic	-7457	NM_178562	340348		NM_178562	ENSG00000158457	TSPAN33	PEN|PEN.|TSPAN-33	tetraspanin 33	protein-coding
180774	chr5	32170171	32170530	+	0	NA	intron (NM_022130, intron 1 of 3)	L1ME3A|LINE|L1	3969	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
36568	chr11	6651901	6652100	+	0	NA	intron (NM_003737, intron 1 of 20)	L2c|LINE|L2	3809	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
69306	chr14	93136351	93136650	+	0	NA	Intergenic	AluSx|SINE|Alu	-20575	NM_014216	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
25466	chr10	6665751	6666300	+	0	NA	Intergenic	Intergenic	30955	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
227180	chr9	87725921	87726400	+	0	NA	promoter-TSS (NM_001912)	promoter-TSS (NM_001912)	41	NM_001257971	1514		NM_001912	ENSG00000135047	CTSL	CATL|CTSL1|MEP	cathepsin L	protein-coding
69455	chr14	94689571	94689950	+	0	NA	Intergenic	Intergenic	49035	NR_015340	388007		NR_015340	ENSG00000290676	SERPINA13P	SERPINA13|UNQ6121	serpin family A member 13, pseudogene	pseudo
18206	chr1	160951051	160951800	+	0	NA	intron (NM_080878, intron 3 of 7)	LTR40b|LTR|ERVL	3384	NM_080878	142683		NM_080878	ENSG00000158764	ITLN2	HL-2|HL2	intelectin 2	protein-coding
224534	chr9	19227971	19229000	+	0	NA	Intergenic	AluJo|SINE|Alu	-2208	NM_001330640	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
111328	chr19	3631221	3632280	+	0	NA	3' UTR (NM_012398, exon 18 of 18)	3' UTR (NM_012398, exon 18 of 18)	-4935	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
44068	chr11	95442121	95442380	+	0	NA	Intergenic	Intergenic	-209775	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
139341	chr2	219597451	219598550	+	0	NA	intron (NM_052902, intron 1 of 24)	CpG	143	NM_052902	114790		NM_052902	ENSG00000144589	STK11IP	LIP1|LKB1IP|STK11IP1	serine/threonine kinase 11 interacting protein	protein-coding
119277	chr19	39544521	39545380	+	0	NA	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-4789	NM_153232	163126		NM_153232	ENSG00000176396	EID2	CRI2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
15223	chr1	149490371	149490730	+	0	NA	intron (NM_001351365, intron 12 of 92)	intron (NM_001351365, intron 12 of 92)	14652	NM_001351365	101060226		NM_001351365	ENSG00000271383	NBPF19	-	NBPF member 19	protein-coding
125368	chr2	11128601	11129150	+	0	NA	non-coding (NR_040080, exon 3 of 9)	non-coding (NR_040080, exon 3 of 9)	3301	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
161884	chr3	45942951	45943880	+	0	NA	promoter-TSS (NM_006564)	promoter-TSS (NM_006564)	-49	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
150574	chr21	43169121	43169900	+	0	NA	promoter-TSS (NM_001363766).2	promoter-TSS (NM_001363766).2	477	NM_001314050	102724652		NM_001314050	ENSG00000276076	LOC102724652	CRYAA|CRYAA2	crystallin alpha A2	protein-coding
165690	chr3	101936371	101937250	+	0	NA	Intergenic	Intergenic	-4049	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
61721	chr13	74119321	74119650	+	0	NA	intron (NM_007249, intron 1 of 7)	L1MEf|LINE|L1	14444	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
65729	chr14	53113751	53114350	+	0	NA	intron (NM_030637, intron 1 of 11)	L1PA10|LINE|L1	39273	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
168814	chr3	152219321	152219580	+	0	NA	Intergenic	Intergenic	-14021	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
19127	chr1	171517471	171517930	+	0	NA	exon (NM_015172, exon 6 of 34)	exon (NM_015172, exon 6 of 34)	32170	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
14836	chr1	146342101	146342300	+	0	NA	TTS (NM_001368128)	TTS (NM_001368128)	2707	NM_001368128	105371242		NM_001368128	ENSG00000270339	PPIAL4H	-	peptidylprolyl isomerase A like 4H	protein-coding
188692	chr5	157291321	157291930	+	0	NA	intron (NM_001291721, intron 3 of 29)	intron (NM_001291721, intron 3 of 29)	22301	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
167380	chr3	128800051	128800930	+	0	NA	intron (NM_004637, intron 3 of 5)	intron (NM_004637, intron 3 of 5)	-46318	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
195799	chr6	41058151	41058450	+	0	NA	intron (NM_006789, intron 1 of 2)	(CA)n|Simple_repeat|Simple_repeat	5099	NM_006789	10930		NM_006789	ENSG00000124701	APOBEC2	ARCD1|ARP1	apolipoprotein B mRNA editing enzyme catalytic subunit 2	protein-coding
162408	chr3	48240001	48240230	+	0	NA	promoter-TSS (NM_016089)	promoter-TSS (NM_016089)	-989	NM_016089	51385		NM_016089	ENSG00000164048	ZNF589	SZF1	zinc finger protein 589	protein-coding
106671	chr18	23137671	23137830	+	0	NA	intron (NM_001100619, intron 1 of 9)	intron (NM_001100619, intron 1 of 9)	1987	NM_001100619	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
233611	chrX	364751	365050	+	0	NA	intron (NM_013239, intron 1 of 12)	AluSx|SINE|Alu	22007	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
26152	chr10	14009321	14010100	+	0	NA	intron (NM_018027, intron 2 of 24)	intron (NM_018027, intron 2 of 24)	-1160	NM_001318336	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
92640	chr17	10150001	10150680	+	0	NA	intron (NM_201433, intron 1 of 13)	(TTTCCCT)n|Simple_repeat|Simple_repeat	48266	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
2190	chr1	8551921	8552380	+	0	NA	intron (NM_012102, intron 7 of 23)	intron (NM_012102, intron 7 of 23)	-57237	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
99871	chr17	56596501	56597030	+	0	NA	Intergenic	CpG	3066	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
40968	chr11	65359951	65360250	+	0	NA	Intergenic	MER76|LTR|ERVL	5349	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
177610	chr4	121096621	121096930	+	0	NA	Intergenic	Intergenic	-24240	NM_024574	79625		NM_024574	ENSG00000173376	NDNF	C4orf31|HH25|NORD	neuron derived neurotrophic factor	protein-coding
1505	chr1	2786471	2787250	+	0	NA	intron (NM_001242672, intron 3 of 7)	intron (NM_001242672, intron 3 of 7)	14008	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
103781	chr17	79005201	79005400	+	0	NA	intron (NM_001159772, intron 1 of 5)	intron (NM_001159772, intron 1 of 5)	4464	NM_001159772	124583		NM_138793	ENSG00000171302	CANT1	DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
82337	chr16	15908001	15908300	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-19547	NM_001304502	123811		NM_144600	ENSG00000133393	CEP20	C16orf63|FOPNL|FOR20|PHSECRG2	centrosomal protein 20	protein-coding
83857	chr16	28892101	28892500	+	0	NA	intron (NM_173201, intron 9 of 21)	Charlie4a|DNA|hAT-Charlie	12257	NM_001286075	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
122033	chr19	48629721	48630250	+	0	NA	TTS (NM_001352)	TTS (NM_001352)	4956	NM_001204160	56848		NM_020126	ENSG00000063176	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding
110055	chr19	1482951	1483280	+	0	NA	intron (NM_017573, intron 12 of 14)	CpG	-3900	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
120335	chr19	43545571	43545930	+	0	NA	intron (NM_006297, intron 14 of 16)	intron (NM_006297, intron 14 of 16)	12562	NM_174945	284346		NM_174945	ENSG00000176472	ZNF575	-	zinc finger protein 575	protein-coding
112353	chr19	5952921	5954650	+	0	NA	intron (NM_003624, intron 2 of 16)	intron (NM_003624, intron 2 of 16)	24355	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
190866	chr6	2110871	2111430	+	0	NA	intron (NM_001253846, intron 4 of 10)	intron (NM_001253846, intron 4 of 10)	64841	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
151776	chr22	18077421	18079250	+	0	NA	5' UTR (NM_001127649, exon 1 of 5)	5' UTR (NM_001127649, exon 1 of 5)	345	NM_001127649	55670		NM_017929	ENSG00000215193	PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
186441	chr5	136082351	136082850	+	0	NA	Intergenic	Intergenic	-2002	NR_030583	100126299		NR_030583	ENSG00000270123	VTRNA2-1	CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a	vault RNA 2-1	ncRNA
61883	chr13	77306301	77307030	+	0	NA	intron (NM_015057, intron 1 of 82)	intron (NM_015057, intron 1 of 82)	20429	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
231302	chr9	130048771	130049280	+	0	NA	Intergenic	AluY|SINE|Alu	-4681	NM_001287346	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
93705	chr17	19447001	19447500	+	0	NA	Intergenic	Intergenic	36018	NM_007148	7732		NM_007148	ENSG00000128482	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
75645	chr15	67255851	67256150	+	0	NA	promoter-TSS (NM_001271885)	promoter-TSS (NM_001271885)	-802	NM_001271885	79719		NM_024666	ENSG00000103591	AAGAB	KPPP1|PPKP1|PPKP1A|p34	alpha and gamma adaptin binding protein	protein-coding
32794	chr10	107837051	107837150	+	0	NA	Intergenic	MER4A1|LTR|ERV1	232193	NR_125760	103695365		NR_125760	ENSG00000229981	LINC01435	TCONS_00018040	long intergenic non-protein coding RNA 1435	ncRNA
60410	chr13	40971001	40971730	+	0	NA	intron (NM_001370329, intron 2 of 9)	AluJo|SINE|Alu	10917	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
167234	chr3	128484871	128485030	+	0	NA	intron (NM_032638, intron 3 of 5)	intron (NM_032638, intron 3 of 5)	2971	NM_001145662	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
9434	chr1	48572751	48572850	+	0	NA	intron (NR_136623, intron 11 of 12)	intron (NR_136623, intron 11 of 12)	-100592	NM_001286239	54558		NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
172305	chr4	1582721	1582980	+	0	NA	Intergenic	AluJo|SINE|Alu	101141	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
197317	chr6	73051301	73051500	+	0	NA	intron (NM_001160133, intron 3 of 14)	L1PA15|LINE|L1	-83647	NR_036244	100423005		NR_036244	ENSG00000266180	MIR4282	-	microRNA 4282	ncRNA
27698	chr10	33140871	33142000	+	0	NA	Intergenic	UCON105|Unknown|Unknown	-24628	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
174586	chr4	40247291	40248580	+	0	NA	TTS (NM_004310)	TTS (NM_004310)	50904	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
219074	chr8	65827751	65828150	+	0	NA	intron (NM_001242318, intron 1 of 12)	L2a|LINE|L2	14114	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
165946	chr3	107601771	107601930	+	0	NA	intron (NM_020235, intron 2 of 16)	Tigger1|DNA|TcMar-Tigger	78888	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
99178	chr17	49439151	49439450	+	0	NA	Intergenic	Intergenic	22449	NR_110805	101927207		NR_110805	ENSG00000249497	LINC02075	-	long intergenic non-protein coding RNA 2075	ncRNA
76259	chr15	74052801	74053430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	29435	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
69937	chr14	99601801	99602530	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	2042	NM_001144995	317762		NM_022747	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
96156	chr17	39683151	39683450	+	0	NA	intron (NM_001291726, intron 2 of 6)	L2c|LINE|L2	4757	NM_033419	93210		NM_033419	ENSG00000161395	PGAP3	AGLA546|CAB2|PERLD1|PP1498|hCOS16	post-GPI attachment to proteins phospholipase 3	protein-coding
41573	chr11	66333601	66333800	+	0	NA	intron (NM_001363560, intron 7 of 9)	intron (NM_001363560, intron 7 of 9)	2734	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
192736	chr6	26376221	26376880	+	0	NA	3' UTR (NM_001197247, exon 11 of 11)	3' UTR (NM_001197247, exon 11 of 11)	-6558	NM_181531	10385		NM_006995	ENSG00000124508	BTN2A2	BT2.2|BTF2|BTN2.2	butyrophilin subfamily 2 member A2	protein-coding
170003	chr3	180600671	180600830	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1413	NM_001042601	151613		NM_133462	ENSG00000163728	TTC14	DRDL5813|PRO19630	tetratricopeptide repeat domain 14	protein-coding
157176	chr22	43012371	43012950	+	0	NA	intron (NM_001184970, intron 1 of 10)	AluSp|SINE|Alu	2489	NM_001184970	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
94274	chr17	28706351	28708030	+	0	NA	intron (NM_001366301, intron 1 of 4)	intron (NM_001366301, intron 1 of 4)	2914	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
187047	chr5	139897171	139897580	+	0	NA	intron (NM_013981, intron 1 of 9)	MIRb|SINE|MIR	101567	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
209972	chr7	92798621	92798880	+	0	NA	intron (NM_001145306, intron 2 of 7)	intron (NM_001145306, intron 2 of 7)	35209	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
128633	chr2	61370201	61370550	+	0	NA	exon (NM_014709, exon 10 of 80)	exon (NM_014709, exon 10 of 80)	47002	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
103063	chr17	77246721	77247950	+	0	NA	Intergenic	CpG	-34164	NM_001293695	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
174315	chr4	38653871	38654730	+	0	NA	intron (NR_026804, intron 1 of 7)	intron (NR_026804, intron 1 of 7)	-9899	NM_016531	51274		NM_016531	ENSG00000109787	KLF3	BKLF	KLF transcription factor 3	protein-coding
59936	chr13	31153771	31154330	+	0	NA	intron (NM_001286503, intron 4 of 16)	intron (NM_001286503, intron 4 of 16)	7854	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
60211	chr13	40487221	40487880	+	0	NA	Intergenic	AluJr|SINE|Alu	-6544	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
27404	chr10	31346851	31347480	+	0	NA	intron (NM_001323675, intron 1 of 6)	intron (NM_001323675, intron 1 of 6)	25505	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
230255	chr9	127901601	127902580	+	0	NA	intron (NM_001287002, intron 1 of 5)	intron (NM_001287002, intron 1 of 5)	-2442	NM_001286999	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
39961	chr11	62569601	62569900	+	0	NA	intron (NM_001404, intron 5 of 9)	intron (NM_001404, intron 5 of 9)	-2679	NR_106805	102465447		NR_106805	ENSG00000276102	MIR6747	hsa-mir-6747	microRNA 6747	ncRNA
140079	chr2	231444771	231445730	+	0	NA	Intergenic	AluSq2|SINE|Alu	10686	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
76317	chr15	74386321	74386650	+	0	NA	intron (NR_146881, intron 2 of 3)	intron (NR_146881, intron 2 of 3)	7403	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
69552	chr14	96576801	96577200	+	0	NA	Intergenic	L2a|LINE|L2	74135	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
75144	chr15	64601051	64601150	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	102181	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
181451	chr5	41864901	41865300	+	0	NA	intron (NR_157114, intron 1 of 15)	L1MA1|LINE|L1	-4930	NR_046635	100874002		NR_046635	ENSG00000248668	OXCT1-AS1	SARRAH	OXCT1 antisense RNA 1	ncRNA
34904	chr11	394571	395150	+	0	NA	intron (NM_007183, intron 1 of 12)	intron (NM_007183, intron 1 of 12)	651	NM_007183	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
68500	chr14	88165151	88165450	+	0	NA	Intergenic	Intergenic	105611	NM_138318	54207		NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
120881	chr19	45577321	45577780	+	0	NA	intron (NM_025136, intron 1 of 1)	L2a|LINE|L2	7252	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
179094	chr4	168478401	168478600	+	0	NA	intron (NM_001378070, intron 1 of 5)	intron (NM_001378070, intron 1 of 5)	1992	NM_001345927	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
223917	chr9	487251	487350	+	0	NA	intron (NM_001256876, intron 3 of 15)	MER47A|DNA|TcMar-Tigger	17009	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
87683	chr16	74627401	74627600	+	0	NA	intron (NM_001370534, intron 11 of 12)	MER54A|LTR|ERVL	-20386	NM_001145666	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
208248	chr7	65554421	65555280	+	0	NA	non-coding (NR_157838, exon 1 of 6)	non-coding (NR_157838, exon 1 of 6)	215	NR_157837	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
226979	chr9	81710871	81711230	+	0	NA	intron (NR_109772, intron 1 of 3)	SVA_F|Retroposon|SVA	21337	NR_109772	101927502		NR_109772	ENSG00000233926	TLE1-DT	-	TLE1 divergent transcript	ncRNA
69044	chr14	91863071	91863530	+	0	NA	intron (NM_001128596, intron 1 of 11)	LTR39|LTR|ERV1	4236	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
6313	chr1	27636421	27637580	+	0	NA	Intergenic	Intergenic	-1815	NM_005248	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
139274	chr2	219483801	219484230	+	0	NA	exon (NM_005876, exon 30 of 41)	exon (NM_005876, exon 30 of 41)	-12340	NM_001286811	100996693		NM_001286811	ENSG00000286095	SPEGNB	-	SPEG neighbor	protein-coding
99718	chr17	50885001	50885400	+	0	NA	Intergenic	Intergenic	-17222	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
70696	chr14	103140971	103141330	+	0	NA	Intergenic	Intergenic	17689	NM_006291	7127		NM_006291	ENSG00000185215	TNFAIP2	B94|EXOC3L3	TNF alpha induced protein 2	protein-coding
164418	chr3	58586821	58587080	+	0	NA	promoter-TSS (NM_001282713)	promoter-TSS (NM_001282713)	64	NM_001282713	11170		NM_007177	ENSG00000168309	FAM107A	DRR1|TU3A	family with sequence similarity 107 member A	protein-coding
236729	chrX	78116271	78116630	+	0	NA	intron (NM_000291, intron 4 of 10)	intron (NM_000291, intron 4 of 10)	12202	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
130471	chr2	85547801	85548780	+	0	NA	3' UTR (NM_001142269, exon 14 of 14)	3' UTR (NM_001142269, exon 14 of 14)	9122	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
148392	chr20	63924151	63924650	+	0	NA	intron (NM_025219, intron 1 of 4)	AluJo|SINE|Alu	4532	NR_040032	100126330		NR_040032	ENSG00000216195	MIR941-4	MIRN941-4	microRNA 941-4	ncRNA
106727	chr18	23511901	23512100	+	0	NA	intron (NM_013326, intron 5 of 19)	L1ME4a|LINE|L1	8489	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
18866	chr1	167933921	167934300	+	0	NA	intron (NM_001143674, intron 2 of 5)	intron (NM_001143674, intron 2 of 5)	1886	NR_026550	25874		NM_015415	ENSG00000143158	MPC2	BRP44|SLC54A2	mitochondrial pyruvate carrier 2	protein-coding
182149	chr5	56477271	56478030	+	0	NA	intron (NR_104664, intron 1 of 4)	intron (NR_104664, intron 1 of 4)	4119	NR_104664	102467147		NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
110423	chr19	1966871	1968100	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	-12936	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
239077	chrY	7339271	7340100	+	0	NA	intron (NR_028062, intron 3 of 7)	intron (NR_028062, intron 3 of 7)	65713	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
109079	chr18	79943821	79945730	+	0	NA	intron (NM_001146343, intron 2 of 3)	Charlie8|DNA|hAT-Charlie	6878	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
30004	chr10	73767071	73767430	+	0	NA	intron (NM_198597, intron 14 of 22)	intron (NM_198597, intron 14 of 22)	-5026	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
128734	chr2	61884551	61885050	+	0	NA	intron (NM_006430, intron 2 of 13)	AluSp|SINE|Alu	-3591	NM_001371765	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
1392	chr1	2541721	2542380	+	0	NA	Intergenic	Intergenic	-11787	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
161005	chr3	37320471	37320780	+	0	NA	intron (NM_001172713, intron 13 of 22)	intron (NM_001172713, intron 13 of 22)	-65644	NM_178344	339883		NM_178339	ENSG00000198590	APRG1	C3orf35	APRG1 tumor suppressor candidate	ncRNA
48038	chr12	6958601	6959750	+	0	NA	intron (NM_002831, intron 11 of 15)	intron (NM_002831, intron 11 of 15)	-4070	NR_135032	105369635		NR_135032	ENSG00000257084	MIR200CHG	U47924.27	MIR200C and MIR141 host gene	ncRNA
164685	chr3	67601901	67602750	+	0	NA	intron (NM_001177599, intron 2 of 10)	intron (NM_001177599, intron 2 of 10)	52287	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
182092	chr5	56006371	56006730	+	0	NA	Intergenic	Intergenic	11383	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
55504	chr12	104957321	104959000	+	0	NA	5' UTR (NM_032148, exon 1 of 12)	5' UTR (NM_032148, exon 1 of 12)	130	NM_001352170	84102		NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
41322	chr11	65897401	65898400	+	0	NA	intron (NM_001300855, intron 1 of 3)	AluJo|SINE|Alu	2488	NM_005438	8061		NM_005438	ENSG00000175592	FOSL1	FRA|FRA1|fra-1	FOS like 1, AP-1 transcription factor subunit	protein-coding
115543	chr19	15469451	15470630	+	0	NA	intron (NM_001363546, intron 3 of 3)	CpG	-5496	NM_001348027	64926		NM_022904	ENSG00000105122	RASAL3	-	RAS protein activator like 3	protein-coding
126072	chr2	25791721	25792350	+	0	NA	intron (NM_001369347, intron 1 of 9)	AluJo|SINE|Alu	2656	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
153925	chr22	30325401	30325900	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	1291	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
212856	chr7	130849701	130849900	+	0	NA	Intergenic	L1MB5|LINE|L1	27010	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
167499	chr3	129182201	129182800	+	0	NA	intron (NM_001127196, intron 1 of 4)	intron (NM_001127196, intron 1 of 4)	1396	NM_001127196	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
170530	chr3	186613101	186613700	+	0	NA	intron (NM_001354572, intron 1 of 6)	intron (NM_001354572, intron 1 of 6)	340	NM_001622	197		NM_001622	ENSG00000145192	AHSG	A2HS|AHS|APMR1|FETUA|HSGA	alpha 2-HS glycoprotein	protein-coding
228710	chr9	109095251	109095550	+	0	NA	intron (NM_032012, intron 3 of 17)	intron (NM_032012, intron 3 of 17)	24547	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
197661	chr6	85452521	85452780	+	0	NA	intron (NM_002526, intron 1 of 8)	intron (NM_002526, intron 1 of 8)	2567	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
59307	chr13	24277821	24278450	+	0	NA	intron (NM_001286795, intron 1 of 9)	intron (NM_001286795, intron 1 of 9)	7385	NM_001286793	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
180145	chr5	1347101	1347400	+	0	NA	Intergenic	Intergenic	-2151	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
109373	chr19	645751	646330	+	0	NA	Intergenic	Intergenic	6145	NM_001300812	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
301	chr1	963551	963850	+	0	NA	intron (NM_198317, intron 8 of 11)	CpG-23	-2782	NM_001367552	84069		NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
95590	chr17	37360951	37361050	+	0	NA	intron (NM_198839, intron 4 of 59)	intron (NM_198839, intron 4 of 59)	-1884	NM_198836	31		NM_000664	ENSG00000278540	ACACA	ACAC|ACACAD|ACACalpha|ACC|ACC1|ACCA|ACCalpha|Acac1|hACC1	acetyl-CoA carboxylase alpha	protein-coding
6126	chr1	27353201	27353600	+	0	NA	exon (NM_001193308, exon 14 of 15)	exon (NM_001193308, exon 14 of 15)	11378	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
214612	chr7	150715021	150715770	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-1162	NM_001199577	100527949		NM_001199577	ENSG00000281887	GIMAP1-GIMAP5	-	GIMAP1-GIMAP5 readthrough	protein-coding
111757	chr19	4374401	4375100	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	25797	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
101348	chr17	67083071	67083230	+	0	NA	intron (NM_001330447, intron 32 of 32)	AluSx|SINE|Alu	38596	NM_000727	786		NM_000727	ENSG00000108878	CACNG1	CACNLG	calcium voltage-gated channel auxiliary subunit gamma 1	protein-coding
194103	chr6	31945801	31946050	+	0	NA	promoter-TSS (NM_001710).3	promoter-TSS (NM_001710).3	-170	NM_001710	629		NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
115270	chr19	14549921	14550580	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	20656	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
221780	chr8	127935621	127935880	+	0	NA	intron (NR_003367, intron 2 of 8)	MIR|SINE|MIR	12973	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
52448	chr12	55931811	55933380	+	0	NA	intron (NM_001351040, intron 1 of 22)	intron (NM_001351040, intron 1 of 22)	567	NM_001351034	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
95565	chr17	36934671	36935550	+	0	NA	intron (NR_135668, intron 1 of 1)	CpG	1551	NR_135670	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
8760	chr1	42730121	42730530	+	0	NA	Intergenic	L1MEg|LINE|L1	9911	NM_148960	149461		NM_148960	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
136643	chr2	179422171	179422330	+	0	NA	Intergenic	Intergenic	140338	NM_001113398	151126		NM_152520	ENSG00000144331	ZNF385B	ZNF533	zinc finger protein 385B	protein-coding
148143	chr20	63494351	63495250	+	0	NA	intron (NM_001958, intron 4 of 7)	CpG	4283	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
218002	chr8	38405001	38405430	+	0	NA	intron (NM_144652, intron 7 of 9)	intron (NM_144652, intron 7 of 9)	18084	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
84796	chr16	31041751	31042480	+	0	NA	Intergenic	Intergenic	8557	NM_004604	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
122500	chr19	49580001	49581630	+	0	NA	promoter-TSS (NM_015953)	promoter-TSS (NM_015953)	-243	NM_015953	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
202054	chr6	154161701	154162080	+	0	NA	intron (NM_001130700, intron 11 of 11)	L2a|LINE|L2	72128	NM_001285527	4988		NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor mu 1	protein-coding
97849	chr17	44967351	44969150	+	0	NA	promoter-TSS (NM_006688)	promoter-TSS (NM_006688)	53	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
169697	chr3	172061801	172062030	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	21384	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
20440	chr1	198518671	198518830	+	0	NA	Intergenic	Intergenic	21930	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
19975	chr1	184969101	184969300	+	0	NA	intron (NM_052966, intron 1 of 13)	MLT1J|LTR|ERVL-MaLR	5308	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
53487	chr12	66235021	66235580	+	0	NA	intron (NM_001142523, intron 7 of 10)	CpG	-15782	NR_106757	102465249		NR_106757	ENSG00000284011	MIR6502	hsa-mir-6502	microRNA 6502	ncRNA
187229	chr5	141223251	141223350	+	0	NA	5' UTR (NM_018934, exon 1 of 1)	5' UTR (NM_018934, exon 1 of 1)	974	NM_018934	56122		NM_018934	ENSG00000120327	PCDHB14	PCDH-BETA14	protocadherin beta 14	protein-coding
74885	chr15	63590151	63590650	+	0	NA	intron (NR_034080, intron 2 of 2)	intron (NR_034080, intron 2 of 2)	-6987	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
118659	chr19	37334101	37335600	+	0	NA	intron (NR_138115, intron 1 of 4)	CpG	201	NM_001329779	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
4114	chr1	19317151	19317330	+	0	NA	intron (NM_001040126, intron 2 of 7)	MIR|SINE|MIR	4914	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
159256	chr3	12936251	12936550	+	0	NA	exon (NM_001134382, exon 3 of 14)	exon (NM_001134382, exon 3 of 14)	31330	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
165842	chr3	105851771	105852300	+	0	NA	intron (NR_135807, intron 3 of 20)	Tigger3b|DNA|TcMar-Tigger	15556	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
845	chr1	1601271	1602100	+	0	NA	intron (NR_147951, intron 2 of 2)	intron (NR_147951, intron 2 of 2)	-1550	NM_001242659	643988		NM_001242659	ENSG00000228594	FNDC10	C1orf233	fibronectin type III domain containing 10	protein-coding
140373	chr2	233028901	233029130	+	0	NA	Intergenic	MER4D1|LTR|ERV1	-3657	NM_005383	4759		NM_005383	ENSG00000115488	NEU2	SIAL2	neuraminidase 2	protein-coding
72560	chr15	34494551	34495580	+	0	NA	Intergenic	CpG	33306	NR_036050	100302160		NR_036050	ENSG00000221649	MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
35360	chr11	1245551	1245650	+	0	NA	exon (NM_002458, exon 31 of 49)	exon (NM_002458, exon 31 of 49)	4076	NR_157183	112577518		NR_157183	ENSG00000255177	MUC5B-AS1	-	MUC5B antisense RNA 1	ncRNA
175419	chr4	70992921	70994140	+	0	NA	promoter-TSS (NM_000788)	promoter-TSS (NM_000788)	-119	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
102257	chr17	75270021	75272490	+	0	NA	promoter-TSS (NM_001370592)	promoter-TSS (NM_001370592)	-24	NM_001370592	57409		NM_020679	ENSG00000125457	MIF4GD	AD023|MIFD|SLIP1	MIF4G domain containing	protein-coding
142075	chr20	2450201	2450430	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	12732	NR_003684	100113378		NR_003684		SNORD119	-	small nucleolar RNA, C/D box 119	snoRNA
232259	chr9	134410001	134410200	+	0	NA	intron (NM_001291921, intron 3 of 8)	intron (NM_001291921, intron 3 of 8)	3540	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
228567	chr9	102049721	102049980	+	0	NA	Intergenic	L2a|LINE|L2	-311203	NM_133445	116443		NM_133445	ENSG00000198785	GRIN3A	GluN3A|NMDAR-L|NMDAR3A|NR3A	glutamate ionotropic receptor NMDA type subunit 3A	protein-coding
233367	chr9	137490751	137491050	+	0	NA	intron (NM_001098537, intron 20 of 34)	L1MDa|LINE|L1	-31566	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
32243	chr10	101838571	101838930	+	0	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	1121	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
103369	chr17	78126121	78126490	+	0	NA	exon (NM_001374593, exon 4 of 19)	exon (NM_001374593, exon 4 of 19)	2450	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
134446	chr2	143158101	143158300	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	28781	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
118909	chr19	38722171	38722330	+	0	NA	intron (NM_004924, intron 12 of 20)	intron (NM_004924, intron 12 of 20)	22224	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
138028	chr2	201283301	201283800	+	0	NA	intron (NR_111983, intron 7 of 8)	SVA_E|Retroposon|SVA	23014	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
225893	chr9	39790471	39790700	+	0	NA	Intergenic	AluSz|SINE|Alu	19574	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
136744	chr2	181289871	181290030	+	0	NA	intron (NR_130784, intron 3 of 4)	MIRb|SINE|MIR	15702	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
72595	chr15	35482051	35482350	+	0	NA	intron (NM_080650, intron 3 of 8)	L1M4a2|LINE|L1	63965	NM_080650	89978		NM_080650	ENSG00000134146	DPH6	ATPBD4	diphthamine biosynthesis 6	protein-coding
37040	chr11	12187451	12187750	+	0	NA	intron (NR_144415, intron 2 of 26)	intron (NR_144415, intron 2 of 26)	23917	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
190962	chr6	2939921	2941330	+	0	NA	Intergenic	LTR12E|LTR|ERV1	21505	NM_001271825	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
172817	chr4	3049521	3049930	+	0	NA	Intergenic	MER57-int|LTR|ERV1	24789	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
35395	chr11	1378971	1379530	+	0	NA	Intergenic	AluY|SINE|Alu	-10684	NR_046331	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
197805	chr6	87699621	87699900	+	0	NA	intron (NM_018064, intron 1 of 4)	intron (NM_018064, intron 1 of 4)	2473	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
50899	chr12	49277501	49277900	+	0	NA	Intergenic	Intergenic	12618	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
81998	chr16	11906101	11906850	+	0	NA	intron (NM_001130007, intron 1 of 14)	AluJr|SINE|Alu	9481	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
188375	chr5	151868471	151869030	+	0	NA	intron (NM_001292000, intron 2 of 7)	intron (NM_001292000, intron 2 of 7)	56101	NM_001146040	2741		NM_000171	ENSG00000145888	GLRA1	HKPX1|STHE	glycine receptor alpha 1	protein-coding
104553	chr17	81322651	81323500	+	0	NA	intron (NR_165247, intron 1 of 2)	intron (NR_165247, intron 1 of 2)	7599	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
188840	chr5	159156171	159157100	+	0	NA	TTS (NM_001199380)	TTS (NM_001199380)	51013	NM_001199382	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
137154	chr2	191075751	191076200	+	0	NA	intron (NM_003151, intron 4 of 23)	AluJr4|SINE|Alu	54449	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
67567	chr14	71398921	71399900	+	0	NA	intron (NM_001354287, intron 2 of 23)	intron (NM_001354287, intron 2 of 23)	1073	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
214966	chr7	151925721	151925980	+	0	NA	Intergenic	L3|LINE|CR1	-30596	NR_033169	168391		NM_145292	ENSG00000106648	GALNTL5	GALNACT19|GALNT15|GalNAc-T5L	polypeptide N-acetylgalactosaminyltransferase like 5	protein-coding
233861	chrX	1528251	1528750	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	8685	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
120014	chr19	41937771	41938830	+	0	NA	Intergenic	MSR1|Satellite|Satellite	9480	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
11656	chr1	91807371	91807530	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	78701	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
217919	chr8	38028321	38028580	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2084	NM_004095	1978		NM_004095	ENSG00000187840	EIF4EBP1	4E-BP1|4EBP1|BP-1|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding
51424	chr12	52018621	52019630	+	0	NA	Intergenic	Intergenic	-3707	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
168664	chr3	150540751	150541350	+	0	NA	TTS (NM_014445)	TTS (NM_014445)	5446	NM_014445	27230		NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding
77956	chr15	89363951	89365200	+	0	NA	intron (NR_133002, intron 1 of 5)	intron (NR_133002, intron 1 of 5)	2054	NR_133002	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
81064	chr16	4330001	4331130	+	0	NA	intron (NM_001318918, intron 2 of 7).2	intron (NM_001318918, intron 2 of 7).2	-2225	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
79549	chr16	953451	953950	+	0	NA	intron (NM_001352017, intron 2 of 11)	intron (NM_001352017, intron 2 of 11)	17284	NM_022773	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
7831	chr1	36310451	36311000	+	0	NA	intron (NM_024676, intron 7 of 12)	L1ME3F|LINE|L1	3618	NM_024676	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
126196	chr2	26776271	26776430	+	0	NA	intron (NM_017877, intron 4 of 5)	intron (NM_017877, intron 4 of 5)	-9665	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
172311	chr4	1606771	1606930	+	0	NA	Intergenic	L1MB3|LINE|L1	77141	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
226690	chr9	75102121	75102380	+	0	NA	intron (NM_012383, intron 1 of 9)	AluJr|SINE|Alu	13736	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
109046	chr18	79771021	79771300	+	0	NA	Intergenic	CpG	89730	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
152047	chr22	19579671	19580230	+	0	NA	Intergenic	Intergenic	-13111	NR_024381	150185		NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
150225	chr21	41168901	41169100	+	0	NA	intron (NM_138991, intron 1 of 7)	(C)n|Simple_repeat|Simple_repeat	840	NM_012105	25825		NM_012105	ENSG00000182240	BACE2	AEPLC|ALP56|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-secretase 2	protein-coding
182176	chr5	56693351	56693650	+	0	NA	Intergenic	AluJb|SINE|Alu	79371	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
41092	chr11	65528721	65529180	+	0	NA	intron (NM_020680, intron 6 of 17)	L2a|LINE|L2	3867	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
26724	chr10	22675251	22675850	+	0	NA	intron (NM_005028, intron 1 of 9)	AluSg|SINE|Alu	38558	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
105158	chr17	82256101	82256780	+	0	NA	intron (NM_139062, intron 2 of 9)	AluJo|SINE|Alu	17260	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
219829	chr8	81719851	81719950	+	0	NA	intron (NR_033195, intron 1 of 6)	intron (NR_033195, intron 1 of 6)	1400	NM_024699	79752		NM_024699	ENSG00000104231	ZFAND1	-	zinc finger AN1-type containing 1	protein-coding
162681	chr3	48931261	48932230	+	0	NA	intron (NM_001349214, intron 3 of 15)	AluY|SINE|Alu	-12360	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
52626	chr12	56268821	56269180	+	0	NA	intron (NM_144576, intron 2 of 4)	intron (NM_144576, intron 2 of 4)	1674	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
23900	chr1	234972421	234972880	+	0	NA	Intergenic	MIRb|SINE|MIR	-8651	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
168763	chr3	151225271	151226100	+	0	NA	intron (NM_014879, intron 1 of 2)	intron (NM_014879, intron 1 of 2)	-22469	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
198583	chr6	107651301	107651500	+	0	NA	intron (NM_018013, intron 6 of 6)	Tigger1|DNA|TcMar-Tigger	80750	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
202440	chr6	157994001	157994400	+	0	NA	intron (NM_003898, intron 1 of 26)	intron (NM_003898, intron 1 of 26)	-6907	NR_046796	100874300		NR_046796	ENSG00000233496	SYNJ2-IT1	-	SYNJ2 intronic transcript 1	ncRNA
226946	chr9	79639951	79640250	+	0	NA	intron (NM_001351547, intron 5 of 18)	L2|LINE|L2	66923	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
195508	chr6	37187221	37188030	+	0	NA	Intergenic	Intergenic	17473	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
86695	chr16	67531351	67532330	+	0	NA	intron (NM_001193523, intron 1 of 21)	MIRb|SINE|MIR	2451	NM_001193523	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
12454	chr1	107795671	107796030	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-101373	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
157092	chr22	42626151	42626450	+	0	NA	intron (NM_001129819, intron 7 of 8)	AluSq10|SINE|Alu	11055	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
117012	chr19	18909971	18910480	+	0	NA	intron (NM_007263, intron 3 of 9)	intron (NM_007263, intron 3 of 9)	9162	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
233955	chrX	2611271	2611430	+	0	NA	intron (NR_033380, intron 2 of 8)	AluSz6|SINE|Alu	2085	NR_033380	401577		NR_033380	ENSG00000291040	CD99P1	CD99L1|CXYorf12|MIC2R|NCRNA00103	CD99 molecule pseudogene 1	pseudo
171364	chr3	196074621	196075100	+	0	NA	intron (NM_001313965, intron 2 of 17)	AluSx4|SINE|Alu	7230	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
185028	chr5	115574521	115574860	+	0	NA	Intergenic	AluSg7|SINE|Alu	-27465	NR_109874	101927100		NR_109874		TICAM2-AS1	-	TICAM2 antisense RNA 1	ncRNA
190616	chr5	181185551	181185650	+	0	NA	Intergenic	Intergenic	6308	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
220217	chr8	96234221	96236350	+	0	NA	intron (NM_001199975, intron 1 of 4)	intron (NM_001199975, intron 1 of 4)	260	NM_001199975	7381		NM_006294	ENSG00000156467	UQCRB	MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding
140046	chr2	231297151	231297330	+	0	NA	intron (NM_001352759, intron 19 of 19)	intron (NM_001352759, intron 19 of 19)	-65468	NR_039937	100616317		NR_039937	ENSG00000263641	MIR4777	-	microRNA 4777	ncRNA
156759	chr22	41840201	41841330	+	0	NA	intron (NR_103834, intron 1 of 21)	HAL1|LINE|L1	-6100	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
12232	chr1	100418571	100418730	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	66144	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
66035	chr14	58282271	58282980	+	0	NA	intron (NR_029435, intron 2 of 3)	AluSx4|SINE|Alu	-5408	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
127700	chr2	43221001	43221500	+	0	NA	Intergenic	Intergenic	5356	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
229594	chr9	123377971	123378550	+	0	NA	3' UTR (NM_173689, exon 13 of 13)	3' UTR (NM_173689, exon 13 of 13)	9481	NR_104603	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
59109	chr13	21177921	21178800	+	0	NA	3' UTR (NM_024026, exon 2 of 2)	3' UTR (NM_024026, exon 2 of 2)	1702	NM_024026	78988		NM_024026	ENSG00000173141	MRPL57	MRP63|bMRP63|mL63	mitochondrial ribosomal protein L57	protein-coding
135840	chr2	170716121	170716380	+	0	NA	intron (NM_001003845, intron 1 of 1)	CpG	913	NM_001003845	389058		NM_001003845	ENSG00000204335	SP5	-	Sp5 transcription factor	protein-coding
177860	chr4	128284201	128284600	+	0	NA	intron (NM_006320, intron 1 of 2)	intron (NM_006320, intron 1 of 2)	3413	NM_006320	10424		NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
157149	chr22	42856321	42858130	+	0	NA	promoter-TSS (NM_014570)	promoter-TSS (NM_014570)	48	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
37611	chr11	20131971	20132700	+	0	NA	Intergenic	L1M3f|LINE|L1	28140	NM_001029865	120237		NM_001029865	ENSG00000109851	DBX1	HLX1	developing brain homeobox 1	protein-coding
86660	chr16	67468951	67469880	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	11742	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
135375	chr2	160470521	160470950	+	0	NA	intron (NM_016836, intron 1 of 13)	L2c|LINE|L2	23072	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
233605	chrX	342201	342400	+	0	NA	intron (NM_013239, intron 7 of 12)	CpG-29373	23155	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
191513	chr6	11317901	11318750	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	64023	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
98985	chr17	48737721	48738300	+	0	NA	Intergenic	Intergenic	-9260	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
186559	chr5	138468341	138468800	+	0	NA	3' UTR (NM_001964, exon 2 of 2)	3' UTR (NM_001964, exon 2 of 2)	3091	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
72829	chr15	40127221	40128080	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-18771	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
63461	chr13	114133771	114133930	+	0	NA	Intergenic	Intergenic	-1227	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
178067	chr4	140061171	140061530	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-66665	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
50525	chr12	47837051	47838030	+	0	NA	Intergenic	Intergenic	-17637	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
179406	chr4	184040051	184040150	+	0	NA	Intergenic	Intergenic	134793	NM_020225	56977		NM_020225	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
42704	chr11	72670471	72670630	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	-1486	NM_001146209	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
88932	chr16	87830651	87831230	+	0	NA	3' UTR (NM_003486, exon 10 of 10)	3' UTR (NM_003486, exon 10 of 10)	3720	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
134479	chr2	143255871	143257300	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	127166	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
204477	chr7	4738501	4739050	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	-36848	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
63800	chr14	21379551	21381030	+	0	NA	intron (NM_007192, intron 1 of 25)	MER2|DNA|TcMar-Tigger	3729	NM_007192	11198		NM_007192	ENSG00000092201	SUPT16H	CDC68|FACTP140|NEDDFAC|SPT16|SPT16/CDC68	SPT16 homolog, facilitates chromatin remodeling subunit	protein-coding
190134	chr5	178068301	178069000	+	0	NA	Intergenic	L1M4c|LINE|L1	-44882	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
26212	chr10	14569421	14570400	+	0	NA	intron (NM_001320736, intron 1 of 4)	intron (NM_001320736, intron 1 of 4)	2089	NM_001320736	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
221852	chr8	128276621	128276880	+	0	NA	Intergenic	Intergenic	126634	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
57581	chr12	122352471	122352630	+	0	NA	intron (NM_001247997, intron 8 of 25)	intron (NM_001247997, intron 8 of 25)	-42992	NR_045382	100507066		NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
8924	chr1	44002471	44003200	+	0	NA	intron (NR_048548, intron 5 of 12)	intron (NR_048548, intron 5 of 12)	10988	NM_001349128	149473		NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding
35025	chr11	558451	558630	+	0	NA	promoter-TSS (NR_147608)	promoter-TSS (NR_147608)	-722	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
114148	chr19	11335351	11335650	+	0	NA	exon (NM_004283, exon 4 of 5)	exon (NM_004283, exon 4 of 5)	4157	NM_004283	9545		NM_004283	ENSG00000105514	RAB3D	D2-2|GOV|RAB16|RAD3D	RAB3D, member RAS oncogene family	protein-coding
193262	chr6	29956371	29956530	+	0	NA	Intergenic	CpG	13918	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
64384	chr14	24149271	24149650	+	0	NA	exon (NM_017999, exon 6 of 21)	exon (NM_017999, exon 6 of 21)	1962	NM_017999	55072		NM_017999	ENSG00000092098	RNF31	HOIP|IMD115|Paul|ZIBRA	ring finger protein 31	protein-coding
154070	chr22	30709971	30710580	+	0	NA	intron (NM_030758, intron 1 of 13)	L1MC5|LINE|L1	15401	NM_001282739	23762		NM_030758	ENSG00000184792	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
13566	chr1	115976001	115977180	+	0	NA	promoter-TSS (NM_018420)	promoter-TSS (NM_018420)	77	NM_018420	55356		NM_018420	ENSG00000163393	SLC22A15	FLIPT1|PRO34686	solute carrier family 22 member 15	protein-coding
17764	chr1	159028821	159029080	+	0	NA	intron (NM_001376587, intron 6 of 11)	L1PBa|LINE|L1	19043	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
214998	chr7	152337771	152337930	+	0	NA	intron (NM_170606, intron 2 of 58)	intron (NM_170606, intron 2 of 58)	98153	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
124889	chr2	8408701	8409500	+	0	NA	Intergenic	Intergenic	-80681	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
210350	chr7	99560551	99560880	+	0	NA	intron (NM_138494, intron 2 of 2)	intron (NM_138494, intron 2 of 2)	1881	NM_001363334	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
25481	chr10	6952621	6952880	+	0	NA	Intergenic	AluJb|SINE|Alu	173152	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
21489	chr1	205711151	205711750	+	0	NA	Intergenic	Intergenic	-30941	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
156931	chr22	42302501	42302900	+	0	NA	Intergenic	Intergenic	-18773	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
220030	chr8	91042051	91042350	+	0	NA	Intergenic	MER31A|LTR|ERV1	-1341	NM_018710	55529		NM_018710	ENSG00000155099	PIP4P2	TMEM55A	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2	protein-coding
203101	chr6	166435601	166436250	+	0	NA	intron (NM_021135, intron 14 of 20)	MIR|SINE|MIR	29458	NR_046793	100874353		NR_046793	ENSG00000232082	RPS6KA2-IT1	-	RPS6KA2 intronic transcript 1	ncRNA
94754	chr17	30814401	30815130	+	0	NA	intron (NM_015986, intron 1 of 7)	AluSp|SINE|Alu	9927	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
238936	chrX	154783921	154784380	+	0	NA	intron (NM_001166462, intron 8 of 12)	intron (NM_001166462, intron 8 of 12)	9152	NR_002984	677835		NR_002984	ENSG00000206693	SNORA56	ACA56	small nucleolar RNA, H/ACA box 56	snoRNA
76119	chr15	72517221	72517780	+	0	NA	intron (NM_005744, intron 1 of 13)	AluSz6|SINE|Alu	43170	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
56789	chr12	120195811	120196580	+	0	NA	TTS (NM_001002)	TTS (NM_001002)	-1480	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
119844	chr19	41394321	41394680	+	0	NA	intron (NM_020158, intron 1 of 5)	AluJr|SINE|Alu	2859	NM_020158	56915		NM_020158	ENSG00000077348	EXOSC5	CABAC|RRP41B|RRP46|Rrp46p|hRrp46p|p12B	exosome component 5	protein-coding
126168	chr2	26370721	26370980	+	0	NA	intron (NR_137633, intron 4 of 9)	SVA_D|Retroposon|SVA	-24061	NM_153835	165082		NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding
239226	chrY	12940771	12940930	+	0	NA	Intergenic	Intergenic	35145	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
146930	chr20	51768171	51769180	+	0	NA	promoter-TSS (NM_006045)	promoter-TSS (NM_006045)	-285	NM_006045	10079		NM_006045	ENSG00000054793	ATP9A	ATPIIA|NEDGBA	ATPase phospholipid transporting 9A (putative)	protein-coding
97413	chr17	43398671	43399830	+	0	NA	intron (NM_001661, intron 1 of 1)	CpG	257	NM_001661	379		NM_001661	ENSG00000175906	ARL4D	ARF4L	ADP ribosylation factor like GTPase 4D	protein-coding
152229	chr22	20151751	20152050	+	0	NA	promoter-TSS (NM_001365892)	promoter-TSS (NM_001365892)	-845	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
83642	chr16	28301671	28301830	+	0	NA	intron (NM_001024401, intron 1 of 3)	MIR1_Amn|SINE|MIR	9225	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
120387	chr19	43667601	43671080	+	0	NA	intron (NM_002659, intron 1 of 6)	intron (NM_002659, intron 1 of 6)	829	NM_001005377	5329		NM_002659	ENSG00000011422	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
144071	chr20	33683551	33683850	+	0	NA	intron (NM_005225, intron 1 of 6)	AluSz6|SINE|Alu	2685	NM_005225	1869		NM_005225	ENSG00000101412	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
96216	chr17	39772121	39772790	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	5770	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
207685	chr7	45172071	45172430	+	0	NA	intron (NM_005856, intron 1 of 2)	L1MB7|LINE|L1	14459	NM_005856	10268		NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
143144	chr20	23932221	23932480	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	-52602	NM_001900	1473		NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
210665	chr7	100515751	100516630	+	0	NA	Intergenic	MamRep38|DNA|hAT	-23013	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
41104	chr11	65538501	65539000	+	0	NA	TTS (NM_001048218)	TTS (NM_001048218)	13667	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
24554	chr1	244864201	244865550	+	0	NA	promoter-TSS (NM_004501)	promoter-TSS (NM_004501)	-332	NM_031844	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
58335	chr12	131477551	131477730	+	0	NA	Intergenic	(TGATAA)n|Simple_repeat|Simple_repeat	130170	NR_103736	338797		NM_001025466		LINC02370	-	long intergenic non-protein coding RNA 2370	ncRNA
139618	chr2	225053721	225054030	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-11407	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
36998	chr11	11958501	11959100	+	0	NA	3' UTR (NM_001330208, exon 29 of 29)	3' UTR (NM_001330208, exon 29 of 29)	49839	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
24042	chr1	235287471	235287630	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-39666	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
163286	chr3	50323321	50323930	+	0	NA	promoter-TSS (NM_033158)	promoter-TSS (NM_033158)	-775	NM_033158	8692		NM_003773	ENSG00000068001	HYAL2	LUCA2	hyaluronidase 2	protein-coding
61914	chr13	77697021	77699580	+	0	NA	promoter-TSS (NR_037438)	promoter-TSS (NR_037438)	-184	NR_037438	100500861		NR_037438	ENSG00000266325	MIR3665	-	microRNA 3665	ncRNA
217852	chr8	37779721	37780330	+	0	NA	TTS (NM_001349346)	TTS (NM_001349346)	-16858	NM_032777	25960		NM_032777	ENSG00000020181	ADGRA2	GPR124|TEM5	adhesion G protein-coupled receptor A2	protein-coding
228548	chr9	101529901	101530950	+	0	NA	Intergenic	Intergenic	-3428	NM_019592	56254		NM_019592	ENSG00000155827	RNF20	BRE1|BRE1A|hBRE1	ring finger protein 20	protein-coding
233348	chr9	137452821	137453130	+	0	NA	intron (NM_001130969, intron 9 of 15)	intron (NM_001130969, intron 9 of 15)	-2889	NR_106964	102466223		NR_106964	ENSG00000284317	MIR7114	hsa-mir-7114	microRNA 7114	ncRNA
185137	chr5	119308271	119309700	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	-24190	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
207418	chr7	44461421	44462130	+	0	NA	intron (NM_015332, intron 2 of 5)	intron (NM_015332, intron 2 of 5)	28883	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
90946	chr17	2629071	2629230	+	0	NA	intron (NM_000430, intron 1 of 10)	L1PBa|LINE|L1	35496	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
113759	chr19	10508621	10509330	+	0	NA	Intergenic	AluJb|SINE|Alu	-5619	NM_203500	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
187096	chr5	140343971	140344330	+	0	NA	intron (NM_001945, intron 2 of 5)	AluSx|SINE|Alu	2453	NM_001945	1839		NM_001945	ENSG00000113070	HBEGF	DTR|DTS|DTSF|HEGFL	heparin binding EGF like growth factor	protein-coding
205395	chr7	16268921	16269180	+	0	NA	non-coding (NR_038946, exon 5 of 5)	non-coding (NR_038946, exon 5 of 5)	58564	NR_038947	100506025		NR_038946	ENSG00000229688	CRPPA-AS1	ISPD-AS1	CRPPA antisense RNA 1	ncRNA
114239	chr19	11500951	11501250	+	0	NA	intron (NM_138783, intron 1 of 8)	L2a|LINE|L2	4739	NM_138783	115950		NM_138783	ENSG00000161914	ZNF653	E430039K05Rik|ZIP67	zinc finger protein 653	protein-coding
75728	chr15	68210751	68211230	+	0	NA	intron (NM_017882, intron 5 of 6)	intron (NM_017882, intron 5 of 6)	-4880	NM_001286694	91860		NM_033429	ENSG00000129007	CALML4	NY-BR-20	calmodulin like 4	protein-coding
139485	chr2	224490021	224490480	+	0	NA	intron (NM_003590, intron 13 of 15)	LTR13|LTR|ERVK	79705	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
35870	chr11	2386651	2386750	+	0	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-8708	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
37319	chr11	14783671	14784680	+	0	NA	intron (NM_001363570, intron 3 of 16)	MER1B|DNA|hAT-Charlie	107496	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
47387	chr12	2768351	2768450	+	0	NA	intron (NR_146317, intron 3 of 3)	L2c|LINE|L2	-26570	NM_002014	2288		NM_002014	ENSG00000004478	FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	FKBP prolyl isomerase 4	protein-coding
199123	chr6	111698151	111698450	+	0	NA	intron (NM_153048, intron 6 of 10)	AluSp|SINE|Alu	60831	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
66258	chr14	61360171	61360330	+	0	NA	intron (NM_006255, intron 1 of 13)	AluSx1|SINE|Alu	38807	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
15356	chr1	150012271	150012930	+	0	NA	Intergenic	Intergenic	-1874	NM_020205	56957		NM_020205	ENSG00000264522	OTUD7B	CEZANNE|ZA20D1	OTU deubiquitinase 7B	protein-coding
28265	chr10	45728571	45728750	+	0	NA	intron (NM_001367414, intron 2 of 30)	AluSg|SINE|Alu	1394	NM_001367415	253725		NM_015262	ENSG00000172661	WASHC2C	FAM21A|FAM21C|VPEF	WASH complex subunit 2C	protein-coding
74700	chr15	62742071	62742830	+	0	NA	intron (NM_015059, intron 29 of 55)	intron (NM_015059, intron 29 of 55)	-81507	NR_029709	406965		NR_029709	ENSG00000211137	MIR190A	MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a	microRNA 190a	ncRNA
129875	chr2	73100071	73100450	+	0	NA	intron (NM_001371272, intron 1 of 5)	intron (NM_001371272, intron 1 of 5)	12688	NM_001371272	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
69276	chr14	93067421	93067880	+	0	NA	non-coding (NR_002808, exon 1 of 1)	non-coding (NR_002808, exon 1 of 1)	198	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
215638	chr8	228171	228530	+	0	NA	intron (NR_003572, intron 2 of 3)	AluSx1|SINE|Alu	-3787	NM_001287255	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
152172	chr22	20087451	20088350	+	0	NA	intron (NM_022720, intron 3 of 13)	intron (NM_022720, intron 3 of 13)	1842	NR_031706	100302197		NR_031706	ENSG00000284464	MIR1306	MIRN1306|hsa-mir-1306|mir-1306	microRNA 1306	ncRNA
55713	chr12	108129271	108129630	+	0	NA	5' UTR (NM_014653, exon 1 of 9)	5' UTR (NM_014653, exon 1 of 9)	162	NM_014653	9671		NM_014653	ENSG00000075035	WSCD2	-	WSC domain containing 2	protein-coding
141926	chr20	1212651	1213300	+	0	NA	Intergenic	MIRb|SINE|MIR	9521	NM_001009612								
75183	chr15	64750071	64750550	+	0	NA	intron (NM_194272, intron 3 of 7)	intron (NM_194272, intron 3 of 7)	10907	NR_138364	348093		NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
129340	chr2	68750271	68750430	+	0	NA	intron (NM_001364821, intron 1 of 10)	AluSq2|SINE|Alu	14973	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
13762	chr1	117013271	117014180	+	0	NA	exon (NM_004258, exon 4 of 10)	exon (NM_004258, exon 4 of 10)	11975	NM_004258	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
231369	chr9	130665671	130666050	+	0	NA	intron (NM_021619, intron 1 of 4)	CpG-28907	1266	NM_021619	59335		NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding
194915	chr6	34791201	34793600	+	0	NA	intron (NM_017754, intron 1 of 20)	CpG	317	NM_017754	54887		NM_017754	ENSG00000065060	BLTP3A	C6orf107|ICBP90|SHIP164B|UHRF1BP1|dJ349A12.1	bridge-like lipid transfer protein family member 3A	protein-coding
57996	chr12	124334601	124334800	+	0	NA	intron (NM_001077261, intron 41 of 47)	intron (NM_001077261, intron 41 of 47)	2542	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
198055	chr6	90209551	90209850	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	87143	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
101367	chr17	67232071	67232230	+	0	NA	intron (NM_001330447, intron 3 of 32)	AluSg|SINE|Alu	-12626	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
123116	chr19	51692901	51693180	+	0	NA	promoter-TSS (NM_001316972)	promoter-TSS (NM_001316972)	-214	NR_029693	406910		NR_029693	ENSG00000208008	MIR125A	MIRN125A|miRNA125A|mir-125a	microRNA 125a	ncRNA
20942	chr1	202222051	202222480	+	0	NA	intron (NM_001017404, intron 1 of 15)	intron (NM_001017404, intron 1 of 15)	8110	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
186385	chr5	135033071	135033880	+	0	NA	non-coding (NR_161235, exon 1 of 6)	non-coding (NR_161235, exon 1 of 6)	201	NR_161235	100996485		NR_161235	ENSG00000224186	PITX1-AS1	C5orf66	PITX1 antisense RNA 1	ncRNA
28290	chr10	46088801	46089200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-20495	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
209788	chr7	87598301	87598830	+	0	NA	intron (NM_001348946, intron 2 of 27)	L1MC5a|LINE|L1	2319	NM_001348946	5243		NM_000927	ENSG00000085563	ABCB1	ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1|p-170	ATP binding cassette subfamily B member 1	protein-coding
94046	chr17	27325001	27325400	+	0	NA	Intergenic	Intergenic	31086	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
49429	chr12	24625151	24625250	+	0	NA	Intergenic	L1PA6|LINE|L1	-41032	NR_029451	144360		NM_144667	ENSG00000197503	LINC00477	C12orf67|FAM191B	long intergenic non-protein coding RNA 477	ncRNA
223610	chr8	144314501	144314730	+	0	NA	TTS (NM_012079)	TTS (NM_012079)	2700	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
95079	chr17	33666971	33667330	+	0	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	-133390	NR_037584	100506677		NR_037584	ENSG00000265544	AA06	AA02|AA04|AA05	uncharacterized LOC100506677	pseudo
91071	chr17	3036271	3036430	+	0	NA	3' UTR (NM_015085, exon 25 of 25)	3' UTR (NM_015085, exon 25 of 25)	27257	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
87644	chr16	74564621	74564880	+	0	NA	intron (NM_001145667, intron 1 of 25)	LTR54B|LTR|ERV1	42364	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
210801	chr7	100863251	100863950	+	0	NA	intron (NM_020246, intron 13 of 13)	intron (NM_020246, intron 13 of 13)	-3787	NM_003302	7205		NM_003302	ENSG00000087077	TRIP6	OIP-1|OIP1|TRIP-6|TRIP6i2|ZRP-1	thyroid hormone receptor interactor 6	protein-coding
220854	chr8	103336151	103336740	+	0	NA	Intergenic	Intergenic	27467	NR_145795	109623480		NR_145795		SNORD173	-	small nucleolar RNA, C/D box 173	snoRNA
79287	chr16	538621	538880	+	0	NA	intron (NM_005632, intron 3 of 13)	intron (NM_005632, intron 3 of 13)	3434	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	ncRNA
45755	chr11	119213351	119213850	+	0	NA	intron (NM_005188, intron 1 of 15)	intron (NM_005188, intron 1 of 15)	7261	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
191132	chr6	4078901	4079100	+	0	NA	promoter-TSS (NR_104464)	promoter-TSS (NR_104464)	137	NM_173563	222826		NM_173563	ENSG00000145975	FAM217A	C6orf146	family with sequence similarity 217 member A	protein-coding
69083	chr14	92093371	92093550	+	0	NA	intron (NM_001164780, intron 1 of 7)	intron (NM_001164780, intron 1 of 7)	13122	NM_001127696	4287		NM_004993	ENSG00000066427	ATXN3	AT3|ATX3|JOS|MJD|MJD1|SCA3	ataxin 3	protein-coding
118866	chr19	38655171	38655930	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	7901	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
137715	chr2	197534521	197535050	+	0	NA	intron (NM_001204094, intron 2 of 7)	AluSc8|SINE|Alu	18487	NM_001204094	25843		NM_015387	ENSG00000115540	MOB4	2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3	MOB family member 4, phocein	protein-coding
98059	chr17	45453671	45454330	+	0	NA	non-coding (NR_027782, exon 6 of 11)	non-coding (NR_027782, exon 6 of 11)	-21130	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
160578	chr3	30730971	30731330	+	0	NA	intron (NM_207359, intron 14 of 14)	intron (NM_207359, intron 14 of 14)	124549	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
60842	chr13	45441471	45441930	+	0	NA	Intergenic	Intergenic	-23239	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
48614	chr12	10366971	10367700	+	0	NA	intron (NR_120430, intron 1 of 3)	HERV15-int|LTR|ERV1	3566	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
165432	chr3	98524971	98525880	+	0	NA	Intergenic	Intergenic	-2359	NM_001040199	56650		NM_019895	ENSG00000080822	CLDND1	C3orf4|GENX-3745|Z38	claudin domain containing 1	protein-coding
169646	chr3	171446201	171446600	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	14005	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
134511	chr2	143422651	143423350	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	293581	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
236538	chrX	72128651	72129380	+	0	NA	3' UTR (NM_001024455, exon 1 of 2)	3' UTR (NM_001024455, exon 1 of 2)	2900	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
113931	chr19	10729021	10729280	+	0	NA	intron (NM_001005362, intron 1 of 19)	AluSg|SINE|Alu	10746	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
170362	chr3	184601351	184601780	+	0	NA	Intergenic	Intergenic	39780	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
15198	chr1	149229851	149230330	+	0	NA	Intergenic	Intergenic	-28944	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
134836	chr2	148644901	148645700	+	0	NA	intron (NM_015630, intron 1 of 13)	CpG	549	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
48775	chr12	11647151	11647730	+	0	NA	Intergenic	Intergenic	-2234	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
3004	chr1	12061651	12061950	+	0	NA	Intergenic	Intergenic	-1503	NM_001243	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
221919	chr8	129535801	129536030	+	0	NA	intron (NR_130917, intron 1 of 3)	intron (NR_130917, intron 1 of 3)	39103	NR_130919	137196		NR_130917	ENSG00000229140	CCDC26	GLM7|RAM	CCDC26 long non-coding RNA	ncRNA
32284	chr10	102117271	102118300	+	0	NA	intron (NM_001321612, intron 1 of 10)	intron (NM_001321612, intron 1 of 10)	2583	NM_001113407	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
151888	chr22	18854101	18854900	+	0	NA	intron (NR_135922, intron 3 of 5)	intron (NR_135922, intron 3 of 5)	4382	NR_135922	102725072		NR_135922	ENSG00000293159	POM121L15P	-	POM121 transmembrane nucleoporin like 15, pseudogene	pseudo
40598	chr11	64620701	64620900	+	0	NA	intron (NM_015080, intron 21 of 22)	intron (NM_015080, intron 21 of 22)	22745	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
200336	chr6	133956151	133956850	+	0	NA	intron (NM_004865, intron 1 of 6)	intron (NM_004865, intron 1 of 6)	3276	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
18376	chr1	161380951	161381250	+	0	NA	Intergenic	AluSg4|SINE|Alu	-13224	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
237181	chrX	107708801	107709780	+	0	NA	Intergenic	Tigger19b|DNA|TcMar-Tigger	7218	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
225071	chr9	33267151	33267480	+	0	NA	intron (NM_001195536, intron 2 of 6)	intron (NM_001195536, intron 2 of 6)	2266	NM_016410	51510		NM_016410	ENSG00000086065	CHMP5	C9orf83|CGI-34|HSPC177|PNAS-2|SNF7DC2|Vps60	charged multivesicular body protein 5	protein-coding
108064	chr18	59881971	59882400	+	0	NA	Intergenic	Intergenic	-17811	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
123634	chr19	54624901	54625650	+	0	NA	intron (NM_006669, intron 1 of 15).2	L1PA15-16|LINE|L1	-5136	NM_001081639	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
158818	chr3	9744501	9744700	+	0	NA	intron (NR_160918, intron 10 of 14)	MIR3|SINE|MIR	-5344	NR_148930	4968		NM_002542	ENSG00000114026	OGG1	HMMH|HOGG1|MUTM|OGH1	8-oxoguanine DNA glycosylase	protein-coding
118898	chr19	38697551	38698150	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	46624	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
228989	chr9	113569801	113570000	+	0	NA	intron (NM_001351526, intron 2 of 8)	intron (NM_001351526, intron 2 of 8)	4843	NM_001351526	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
5554	chr1	25879571	25879880	+	0	NA	Intergenic	MIRc|SINE|MIR	-4017	NM_178422	164091		NM_178422	ENSG00000182749	PAQR7	MPRA|PGLP|mSR	progestin and adipoQ receptor family member 7	protein-coding
15405	chr1	150239021	150239750	+	0	NA	Intergenic	AluYm1|SINE|Alu	-3273	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
11899	chr1	93219051	93219800	+	0	NA	intron (NM_206886, intron 14 of 27)	Tigger7|DNA|TcMar-Tigger	38701	NM_001378204	343099		NM_206886	ENSG00000122483	CCDC18	NY-SAR-41	coiled-coil domain containing 18	protein-coding
15891	chr1	151538771	151539000	+	0	NA	TTS (NM_020770)	TTS (NM_020770)	-1424	NM_001126337	7286		NM_020127	ENSG00000143367	TUFT1	WHSF	tuftelin 1	protein-coding
152404	chr22	20556301	20556900	+	0	NA	intron (NM_001003891, intron 5 of 17)	L1MD2|LINE|L1	48553	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
188430	chr5	154384151	154384900	+	0	NA	intron (NM_198321, intron 6 of 11)	MER33|DNA|hAT-Charlie	37419	NR_031626	100302181		NR_031626	ENSG00000221430	MIR1294	MIRN1294|hsa-mir-1294|mir-1294	microRNA 1294	ncRNA
231063	chr9	129639471	129640000	+	0	NA	intron (NM_177999, intron 2 of 4)	MIRc|SINE|MIR	2416	NM_177999	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
102200	chr17	75175101	75175780	+	0	NA	intron (NM_006937, intron 2 of 3)	AluSx|SINE|Alu	7519	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
21037	chr1	203031571	203031930	+	0	NA	intron (NM_001304332, intron 1 of 28)	Charlie19a|DNA|hAT-Charlie	5259	NM_001304332	8497		NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding
21814	chr1	207309751	207310250	+	0	NA	Intergenic	Intergenic	-11678	NM_001300903	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
212669	chr7	129606571	129607030	+	0	NA	Intergenic	AluSx|SINE|Alu	-4920	NM_001293163	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
121012	chr19	45784901	45785280	+	0	NA	intron (NM_004943, intron 3 of 4)	MIR3|SINE|MIR	-2600	NM_001081560	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
2744	chr1	10673971	10674130	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	122596	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
138269	chr2	203533571	203534800	+	0	NA	intron (NM_001329728, intron 1 of 15)	intron (NM_001329728, intron 1 of 15)	1116	NM_203365	65059		NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
16740	chr1	155271601	155271980	+	0	NA	intron (NM_001294338, intron 1 of 12).2	L2c|LINE|L2	1714	NM_003993	1196		NM_001291	ENSG00000176444	CLK2	-	CDC like kinase 2	protein-coding
208267	chr7	65765771	65765930	+	0	NA	intron (NR_038378, intron 1 of 7)	AluSx3|SINE|Alu	4960	NR_038378	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
38850	chr11	47330101	47331000	+	0	NA	TTS (NM_001376597)	TTS (NM_001376597)	22152	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
173180	chr4	6727171	6727730	+	0	NA	Intergenic	CpG	11276	NM_018366	55330		NM_018366	ENSG00000186222	BLOC1S4	BCAS4L|BLOS4|CNO	biogenesis of lysosomal organelles complex 1 subunit 4	protein-coding
410	chr1	1071451	1072780	+	0	NA	exon (NM_001205252, exon 2 of 2)	exon (NM_001205252, exon 2 of 2)	2191	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
80600	chr16	2924951	2926000	+	0	NA	intron (NM_032296, intron 2 of 9)	intron (NM_032296, intron 2 of 9)	13496	NM_020912	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
7510	chr1	33430301	33432130	+	0	NA	promoter-TSS (NM_001330488)	promoter-TSS (NM_001330488)	-120	NM_001385109	1912		NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2	protein-coding
193036	chr6	28488801	28490750	+	0	NA	Intergenic	Intergenic	26018	NM_182701	257202		NM_182701	ENSG00000198704	GPX6	GPX5p|GPXP3|GPx-6|GSHPx-6|dJ1186N24|dJ1186N24.1	glutathione peroxidase 6	protein-coding
3494	chr1	16027551	16027650	+	0	NA	intron (NM_004070, intron 8 of 19)	intron (NM_004070, intron 8 of 19)	5564	NM_001257139	1187		NM_004070	ENSG00000186510	CLCNKA	CLCK1|ClC-K1|hClC-Ka	chloride voltage-gated channel Ka	protein-coding
122557	chr19	49655551	49656780	+	0	NA	intron (NM_021228, intron 9 of 10)	intron (NM_021228, intron 9 of 10)	-8977	NM_001282519	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
102081	chr17	74959821	74960100	+	0	NA	intron (NM_030630, intron 7 of 18)	intron (NM_030630, intron 7 of 18)	-10729	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
128082	chr2	47886851	47887450	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluSp|SINE|Alu	1569	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
212580	chr7	128937621	128938410	+	0	NA	promoter-TSS (NM_001098629)	promoter-TSS (NM_001098629)	88	NM_001098630	3663		NM_032643	ENSG00000128604	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
134497	chr2	143323621	143323880	+	0	NA	intron (NM_018460, intron 6 of 13)	AluYc|SINE|Alu	194331	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
96524	chr17	40343101	40344000	+	0	NA	promoter-TSS (NR_110861)	promoter-TSS (NR_110861)	-414	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
204499	chr7	4771621	4772400	+	0	NA	TTS (NM_001037165)	TTS (NM_001037165)	-3613	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
123733	chr19	55059351	55059450	+	0	NA	intron (NM_138412, intron 2 of 7).5	intron (NM_138412, intron 2 of 7).5	3748	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
39802	chr11	61969301	61969500	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1766	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
175820	chr4	77864971	77865130	+	0	NA	intron (NM_020236, intron 1 of 8)	AluSz|SINE|Alu	2220	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
124253	chr19	57599701	57600530	+	0	NA	non-coding (NR_135923, exon 1 of 4)	non-coding (NR_135923, exon 1 of 4)	230	NR_135923	348327		NM_020880	ENSG00000183647	ZNF530	-	zinc finger protein 530	protein-coding
6900	chr1	31593851	31594300	+	0	NA	Intergenic	Intergenic	15930	NM_001204415	64129		NM_022164	ENSG00000142910	TINAGL1	ARG1|LCN7|LIECG3|TINAGRP	tubulointerstitial nephritis antigen like 1	protein-coding
169990	chr3	179608721	179609550	+	0	NA	intron (NM_001199957, intron 1 of 3)	MER6B|DNA|TcMar-Tigger	4341	NM_001199957	4711		NM_002492	ENSG00000136521	NDUFB5	CISGDH|SGDH	NADH:ubiquinone oxidoreductase subunit B5	protein-coding
157238	chr22	43339521	43339780	+	0	NA	intron (NM_173050, intron 1 of 21)	intron (NM_173050, intron 1 of 21)	3722	NM_173050	80274		NM_152514	ENSG00000159307	SCUBE1	-	signal peptide, CUB domain and EGF like domain containing 1	protein-coding
187068	chr5	140133601	140134000	+	0	NA	Intergenic	L2a|LINE|L2	7863	NM_001007189	492311		NM_001007189	ENSG00000182700	IGIP	C5orf53	IgA inducing protein	protein-coding
111700	chr19	4284651	4284750	+	0	NA	intron (NM_001372011, intron 4 of 6)	intron (NM_001372011, intron 4 of 6)	5434	NM_020209	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
78228	chr15	90655821	90656530	+	0	NA	intron (NR_120372, intron 2 of 3)	intron (NR_120372, intron 2 of 3)	-4059	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
44564	chr11	108220771	108221320	+	0	NA	intron (NM_001321307, intron 1 of 17)	intron (NM_001321307, intron 1 of 17)	1593	NM_001321307	4863		NM_002519	ENSG00000149308	NPAT	E14|E14/NPAT|p220	nuclear protein, coactivator of histone transcription	protein-coding
82882	chr16	21554571	21555680	+	0	NA	Intergenic	Intergenic	-34681	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
200491	chr6	135481921	135482180	+	0	NA	intron (NM_017651, intron 4 of 27)	L1MD3|LINE|L1	15690	NM_001134831	54806		NM_017651	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
112016	chr19	5038821	5039330	+	0	NA	intron (NM_001370093, intron 3 of 11)	intron (NM_001370093, intron 3 of 11)	69962	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
127757	chr2	43993851	43994150	+	0	NA	intron (NM_133259, intron 1 of 37)	MIRb|SINE|MIR	1989	NM_133259	10128		NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC|MC4DN5	leucine rich pentatricopeptide repeat containing	protein-coding
152096	chr22	19852251	19852550	+	0	NA	5' UTR (NM_024627, exon 3 of 3)	5' UTR (NM_024627, exon 3 of 3)	2474	NM_053004	54584		NM_053004	ENSG00000185838	GNB1L	DGCRK3|FKSG1|GY2|WDR14|WDVCF	G protein subunit beta 1 like	protein-coding
49501	chr12	25324601	25325000	+	0	NA	Intergenic	AluSz|SINE|Alu	-73871	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
196240	chr6	42882521	42882900	+	0	NA	intron (NR_134562, intron 2 of 6)	AluSx|SINE|Alu	3094	NM_001366481	285855		NM_198486	ENSG00000146223	RPL7L1	dJ475N16.4	ribosomal protein L7 like 1	protein-coding
202830	chr6	159728771	159729150	+	0	NA	intron (NM_001270531, intron 1 of 7)	intron (NM_001270531, intron 1 of 7)	1454	NM_001270533	9589		NM_004906	ENSG00000146457	WTAP	Mum2	WT1 associated protein	protein-coding
26148	chr10	13891251	13892100	+	0	NA	intron (NM_018027, intron 2 of 24)	CpG	80221	NM_001318337	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
126147	chr2	26186251	26186630	+	0	NA	intron (NM_001168241, intron 5 of 5)	intron (NM_001168241, intron 5 of 5)	5724	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
38418	chr11	45079521	45080880	+	0	NA	Intergenic	Intergenic	-13959	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
239099	chrY	10937471	10937630	+	0	NA	Intergenic	(TTCCA)n|Simple_repeat|Simple_repeat	1026752	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
109097	chr18	79968151	79968880	+	0	NA	intron (NM_001136180, intron 3 of 3)	AluSx|SINE|Alu	3872	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
195621	chr6	37705221	37706430	+	0	NA	Intergenic	CpG	-7942	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
93355	chr17	18229651	18230380	+	0	NA	exon (NM_004140, exon 2 of 23)	exon (NM_004140, exon 2 of 23)	4380	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
92835	chr17	16207421	16208030	+	0	NA	intron (NM_006311, intron 1 of 45)	AluY|SINE|Alu	7809	NM_006311	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
176623	chr4	99566171	99566330	+	0	NA	intron (NM_001300785, intron 1 of 17)	AluY|SINE|Alu	2120	NM_000253	4547		NM_000253	ENSG00000138823	MTTP	ABL|MTP	microsomal triglyceride transfer protein	protein-coding
84592	chr16	30655421	30655680	+	0	NA	exon (NM_001320464, exon 10 of 12)	exon (NM_001320464, exon 10 of 12)	-2881	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
135430	chr2	161165251	161165930	+	0	NA	intron (NM_001199135, intron 1 of 7)	intron (NM_001199135, intron 1 of 7)	5162	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
45622	chr11	118916851	118916950	+	0	NA	intron (NM_001378213, intron 2 of 9)	intron (NM_001378213, intron 2 of 9)	6192	NR_039713	100616376		NR_039713	ENSG00000264211	MIR4492	mir-4492	microRNA 4492	ncRNA
234206	chrX	12956801	12957950	+	0	NA	Intergenic	Intergenic	-14075	NR_030727	349408		NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
191964	chr6	16143471	16144380	+	0	NA	intron (NM_013262, intron 5 of 6)	intron (NM_013262, intron 5 of 6)	2369	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
116925	chr19	18831641	18833050	+	0	NA	exon (NM_002911, exon 1 of 24)	exon (NM_002911, exon 1 of 24)	386	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
26841	chr10	24724121	24725280	+	0	NA	promoter-TSS (NM_020824)	promoter-TSS (NM_020824)	-813	NM_001367447	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
63785	chr14	21271071	21271230	+	0	NA	Intergenic	L1ME4a|LINE|L1	-1671	NM_001077442	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
217780	chr8	33481121	33481530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3857	NM_032509	84549		NM_032509	ENSG00000198042	MAK16	MAK16L|RBM13	MAK16 homolog	protein-coding
200760	chr6	137821301	137821500	+	0	NA	Intergenic	L2b|LINE|L2	-45859	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
239142	chrY	11323321	11323580	+	0	NA	Intergenic	LSAU|Satellite|Satellite	1098140	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
91803	chr17	7035241	7036930	+	0	NA	promoter-TSS (NM_201566)	promoter-TSS (NM_201566)	70	NM_201566	201232		NM_201566	ENSG00000174327	SLC16A13	MCT13	solute carrier family 16 member 13	protein-coding
114167	chr19	11357751	11358330	+	0	NA	intron (NM_001170635, intron 3 of 9)	(TG)n|Simple_repeat|Simple_repeat	2608	NM_022737	64748		NM_022737	ENSG00000105520	PLPPR2	LPPR2|PRG4	phospholipid phosphatase related 2	protein-coding
48255	chr12	8493001	8493430	+	0	NA	Intergenic	Intergenic	-20288	NM_080387	338339		NM_080387	ENSG00000166527	CLEC4D	CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL	C-type lectin domain family 4 member D	protein-coding
75830	chr15	69455651	69456050	+	0	NA	3' UTR (NM_213725, exon 3 of 3)	3' UTR (NM_213725, exon 3 of 3)	3032	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
174426	chr4	39457221	39457600	+	0	NA	intron (NM_000661, intron 4 of 7)	intron (NM_000661, intron 4 of 7)	1512	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
192911	chr6	27630951	27631400	+	0	NA	Intergenic	CpG	-62860	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
139992	chr2	230930051	230930350	+	0	NA	Intergenic	Intergenic	-4958	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
50656	chr12	48816501	48816700	+	0	NA	intron (NM_001206916, intron 1 of 12)	intron (NM_001206916, intron 1 of 12)	1026	NM_001206916	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
10424	chr1	65525351	65525650	+	0	NA	promoter-TSS (NM_001198687)	promoter-TSS (NM_001198687)	-151	NM_001198687	3953		NM_002303	ENSG00000116678	LEPR	CD295|LEP-R|LEPRD|OB-R|OBR	leptin receptor	protein-coding
155039	chr22	37483751	37485700	+	0	NA	intron (NM_002405, intron 1 of 7)	intron (NM_002405, intron 1 of 7)	1659	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
80479	chr16	2704351	2704650	+	0	NA	intron (NM_018992, intron 5 of 5)	MER77B|LTR|ERVL	15724	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
185269	chr5	124649471	124650030	+	0	NA	intron (NM_001385621, intron 2 of 8)	intron (NM_001385621, intron 2 of 8)	96889	NM_001385620	57507		NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
4274	chr1	19663901	19666430	+	0	NA	5' UTR (NM_000871, exon 1 of 3)	5' UTR (NM_000871, exon 1 of 3)	290	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
33550	chr10	119302341	119303200	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	-75202	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
25790	chr10	11172271	11172530	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	7370	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
140097	chr2	231460321	231461030	+	0	NA	promoter-TSS (NR_004398)	promoter-TSS (NR_004398)	-233	NR_004398	25826		NR_004398	ENSG00000202400	SNORD82	RNU82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA
130519	chr2	85608201	85608400	+	0	NA	3' UTR (NM_001013649, exon 4 of 4)	3' UTR (NM_001013649, exon 4 of 4)	3766	NM_001013649	388969		NM_001013649	ENSG00000168887	C2orf68	HCRCN81	chromosome 2 open reading frame 68	protein-coding
200517	chr6	136032151	136032250	+	0	NA	intron (NM_018945, intron 2 of 12)	intron (NM_018945, intron 2 of 12)	40627	NR_149042	644135		NR_149042	ENSG00000237596	PDE7B-AS1	-	PDE7B antisense RNA 1	ncRNA
226997	chr9	83648721	83649830	+	0	NA	Intergenic	Intergenic	26132	NR_046422	414328		NM_001001551	ENSG00000148057	IDNK	C9orf103|bA522I20.2|hGntK	IDNK gluconokinase	protein-coding
30192	chr10	74585101	74585800	+	0	NA	intron (NM_001369123, intron 7 of 9)	intron (NM_001369123, intron 7 of 9)	-56126	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
131101	chr2	89837201	89837400	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-199393	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
58213	chr12	127145851	127146500	+	0	NA	Intergenic	CpG	-85778	NR_104646	101927592		NR_104646	ENSG00000249345	LINC02405	-	long intergenic non-protein coding RNA 2405	ncRNA
187172	chr5	140638751	140640100	+	0	NA	promoter-TSS (NM_001300982)	promoter-TSS (NM_001300982)	-2	NM_001300980	55374		NM_018502	ENSG00000113119	TMCO6	PRO1580	transmembrane and coiled-coil domains 6	protein-coding
160986	chr3	37242471	37244630	+	0	NA	non-coding (NR_149029, exon 1 of 1)	non-coding (NR_149029, exon 1 of 1)	279	NM_001172713	2803		NM_002078	ENSG00000144674	GOLGA4	CRPF46|GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
178048	chr4	139657801	139658450	+	0	NA	Intergenic	Intergenic	-7643	NM_001204367	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
89204	chr16	88610101	88610700	+	0	NA	intron (NM_144604, intron 7 of 17)	intron (NM_144604, intron 7 of 17)	-28172	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
176724	chr4	101306171	101306780	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	23939	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
209294	chr7	75990151	75990400	+	0	NA	intron (NR_156695, intron 3 of 10)	intron (NR_156695, intron 3 of 10)	4320	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
84261	chr16	30030721	30031500	+	0	NA	5' UTR (NM_031478, exon 1 of 5)	5' UTR (NM_031478, exon 1 of 5)	161	NM_031478	83723		NM_031478	ENSG00000149926	TLCD3B	CORD22|FAM57B|FP1188	TLC domain containing 3B	protein-coding
88430	chr16	84752101	84752680	+	0	NA	intron (NR_073578, intron 3 of 10)	intron (NR_073578, intron 3 of 10)	52390	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
219410	chr8	70633071	70633430	+	0	NA	intron (NR_038881, intron 1 of 3)	intron (NR_038881, intron 1 of 3)	24673	NR_038881	286190		NR_038881	ENSG00000246366	LACTB2-AS1	-	LACTB2 antisense RNA 1	ncRNA
25765	chr10	11106851	11107430	+	0	NA	intron (NM_001326345, intron 1 of 13)	intron (NM_001326345, intron 1 of 13)	-1652	NR_046108	439950		NR_046108	ENSG00000237986	CELF2-AS2	-	CELF2 antisense RNA 2	ncRNA
70859	chr14	103710201	103710730	+	0	NA	intron (NM_001371232, intron 4 of 9)	AluY|SINE|Alu	4986	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
69756	chr14	99050601	99050800	+	0	NA	Intergenic	L1MEd|LINE|L1	221497	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
222473	chr8	140116851	140116950	+	0	NA	intron (NR_164662, intron 16 of 22)	intron (NR_164662, intron 16 of 22)	-16365	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
64343	chr14	24044971	24045350	+	0	NA	intron (NR_102694, intron 2 of 3)	AluSc8|SINE|Alu	-6849	NM_138360	90668		NM_138360	ENSG00000186648	CARMIL3	C14orf121|LRRC16B|crml-1	capping protein regulator and myosin 1 linker 3	protein-coding
155333	chr22	38220401	38220800	+	0	NA	3' UTR (NM_012264, exon 9 of 9)	3' UTR (NM_012264, exon 9 of 9)	4120	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
187404	chr5	141937871	141938030	+	0	NA	intron (NM_014773, intron 11 of 11)	AluSq2|SINE|Alu	14079	NM_014773	9812		NM_014773	ENSG00000081791	DELE1	DELE|DELE1(L)|KIAA0141	DAP3 binding cell death enhancer 1	protein-coding
31660	chr10	97416471	97417200	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	9222	NR_157582	644215		NR_157582		LOC644215	-	uncharacterized LOC644215	ncRNA
23402	chr1	228236871	228237030	+	0	NA	intron (NM_052843, intron 9 of 80)	L1MEf|LINE|L1	-23286	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
238705	chrX	154091271	154091950	+	0	NA	intron (NM_001316337, intron 2 of 4)	intron (NM_001316337, intron 2 of 4)	5359	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
52555	chr12	56145571	56147530	+	0	NA	Intergenic	AluJr4|SINE|Alu	-6037	NM_001199629	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
99386	chr17	49972971	49973830	+	0	NA	intron (NM_138281, intron 2 of 2)	intron (NM_138281, intron 2 of 2)	634	NM_001934	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
66778	chr14	64654271	64654430	+	0	NA	Intergenic	Intergenic	-50074	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
214809	chr7	151205071	151205680	+	0	NA	intron (NM_001304419, intron 1 of 18)	intron (NM_001304419, intron 1 of 18)	121	NM_001304419	392843		NM_001304419	ENSG00000278685	IQCA1L	IQCA1P1	IQ motif containing with AAA domain 1 like	protein-coding
210307	chr7	99467851	99468030	+	0	NA	Intergenic	AluSx|SINE|Alu	-1773	NM_001003713	9551		NM_004889	ENSG00000241468	ATP5MF	ATP5J2|ATP5JL	ATP synthase membrane subunit f	protein-coding
208139	chr7	64045321	64045600	+	0	NA	promoter-TSS (NM_001159522)	promoter-TSS (NM_001159522)	26	NM_001159522	442319		NM_001159522	ENSG00000214652	ZNF727	ZNF727P	zinc finger protein 727	protein-coding
146637	chr20	50282871	50283030	+	0	NA	Intergenic	L2a|LINE|L2	-9770	NR_034124	284751		NM_001025463	ENSG00000203999	LINC01270	-	long intergenic non-protein coding RNA 1270	ncRNA
119434	chr19	40365601	40366330	+	0	NA	intron (NM_001291311, intron 2 of 12)	intron (NM_001291311, intron 2 of 12)	-3881	NR_106854	102465477		NR_106854	ENSG00000275652	MIR6796	hsa-mir-6796	microRNA 6796	ncRNA
138137	chr2	202305251	202306150	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	12649	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
163663	chr3	52220011	52221130	+	0	NA	TTS (NM_017442)	TTS (NM_017442)	5593	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
189252	chr5	172041151	172041330	+	0	NA	TTS (NM_005990)	TTS (NM_005990)	-34602	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
132515	chr2	106098871	106099230	+	0	NA	intron (NR_165308, intron 12 of 14)	intron (NR_165308, intron 12 of 14)	33362	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
45275	chr11	118013371	118013530	+	0	NA	TTS (NM_001354434)	TTS (NM_001354434)	27056	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
53039	chr12	57613971	57614980	+	0	NA	intron (NM_001347933, intron 7 of 13)	intron (NM_001347933, intron 7 of 13)	3040	NR_046223	115557		NM_133483	ENSG00000240771	ARHGEF25	GEFT|p63RhoGEF	Rho guanine nucleotide exchange factor 25	protein-coding
101861	chr17	74209021	74209530	+	0	NA	TTS (NR_026914)	TTS (NR_026914)	4046	NR_026914	85001		NM_032915	ENSG00000246731	MGC16275	-	uncharacterized protein MGC16275	ncRNA
31695	chr10	97612321	97612650	+	0	NA	3' UTR (NM_001134670, exon 3 of 3)	3' UTR (NM_001134670, exon 3 of 3)	21015	NM_178832	118812		NM_178832	ENSG00000171160	MORN4	C10orf83|UTA|bA548K23.4|rtp	MORN repeat containing 4	protein-coding
42513	chr11	70366851	70367150	+	0	NA	intron (NM_001378006, intron 25 of 31)	intron (NM_001378006, intron 25 of 31)	-31506	NM_138565	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
9188	chr1	45603821	45604800	+	0	NA	intron (NM_152298, intron 3 of 13)	intron (NM_152298, intron 3 of 13)	19744	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
144893	chr20	36934971	36936030	+	0	NA	intron (NM_001363733, intron 3 of 15)	intron (NM_001363733, intron 3 of 15)	16208	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
182238	chr5	57030151	57030650	+	0	NA	Intergenic	Intergenic	-78270	NM_152622	166968		NM_152622	ENSG00000155545	MIER3	-	MIER family member 3	protein-coding
239393	chrY	21259951	21260530	+	0	NA	Intergenic	Intergenic	126120	NM_001282471	100533178		NM_001282471		PRORY	CYorf17	PRORY Y-linked lncRNA	ncRNA
108408	chr18	69909851	69910580	+	0	NA	intron (NM_001303619, intron 1 of 4)	L1MD3|LINE|L1	37658	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
101605	chr17	68176871	68177330	+	0	NA	Intergenic	AluJb|SINE|Alu	-21560	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
47189	chr12	805101	805750	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	52502	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
37117	chr11	13306051	13306350	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	28410	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
199770	chr6	125924371	125924730	+	0	NA	intron (NM_001199620, intron 15 of 17)	intron (NM_001199620, intron 15 of 17)	5295	NM_001199622	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
104085	chr17	80255901	80256100	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-4852	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
152068	chr22	19724971	19725130	+	0	NA	TTS (NR_037611)	TTS (NR_037611)	1511	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
167477	chr3	129126171	129126330	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	-4100	NM_001204883	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
102814	chr17	76448001	76448400	+	0	NA	intron (NM_022066, intron 1 of 17)	intron (NM_022066, intron 1 of 17)	4952	NM_022066	63893		NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin conjugating enzyme E2 O	protein-coding
196573	chr6	44146301	44146500	+	0	NA	intron (NM_001318792, intron 10 of 23)	intron (NM_001318792, intron 10 of 23)	-12420	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105483	chr17	83074801	83075400	+	0	NA	Intergenic	Intergenic	-4509	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
29382	chr10	70084251	70084430	+	0	NA	intron (NM_018649, intron 2 of 8)	MER91B|DNA|hAT-Tip100	31494	NM_018649	55506		NM_018649	ENSG00000099284	MACROH2A2	H2AFY2	macroH2A.2 histone	protein-coding
11525	chr1	90975301	90975500	+	0	NA	intron (NM_201269, intron 2 of 5)	intron (NM_201269, intron 2 of 5)	46108	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
2419	chr1	9591901	9592100	+	0	NA	intron (NM_001130924, intron 1 of 10)	intron (NM_001130924, intron 1 of 10)	3089	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
147195	chr20	57317801	57318000	+	0	NA	Intergenic	L2a|LINE|L2	3691	NR_036219	100422883		NR_036219	ENSG00000266666	MIR4325	-	microRNA 4325	ncRNA
66941	chr14	65521571	65521730	+	0	NA	intron (NM_004480, intron 2 of 9)	L2a|LINE|L2	50548	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
93406	chr17	18365651	18365750	+	0	NA	Intergenic	AluY|SINE|Alu	-2137	NM_148918	6470		NM_004169	ENSG00000176974	SHMT1	CSHMT|SHMT	serine hydroxymethyltransferase 1	protein-coding
110231	chr19	1766551	1766900	+	0	NA	intron (NM_001080488, intron 1 of 1)	intron (NM_001080488, intron 1 of 1)	13219	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
101955	chr17	74601971	74602230	+	0	NA	intron (NR_158152, intron 1 of 3)	intron (NR_158152, intron 1 of 3)	2260	NR_158152	101928343		NR_158152		LOC101928343	-	uncharacterized LOC101928343	ncRNA
193584	chr6	30684411	30685080	+	0	NA	exon (NM_001134870, exon 2 of 4).6	exon (NM_001134870, exon 2 of 4).6	1900	NM_133471	170954		NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding
172254	chr4	1380351	1380650	+	0	NA	intron (NM_001317935, intron 11 of 13)	intron (NM_001317935, intron 11 of 13)	25942	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
29518	chr10	70759871	70760030	+	0	NA	intron (NM_139155, intron 21 of 21)	intron (NM_139155, intron 21 of 21)	22416	NR_134534	219793		NM_152710	ENSG00000166220	TBATA	C10orf27|SPATIAL	thymus, brain and testes associated	protein-coding
235414	chrX	45757721	45758700	+	0	NA	Intergenic	Intergenic	-11086	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
232883	chr9	136835971	136836330	+	0	NA	intron (NM_024718, intron 8 of 14)	intron (NM_024718, intron 8 of 14)	5193	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
184190	chr5	95835861	95836530	+	0	NA	intron (NR_157807, intron 1 of 2)	intron (NR_157807, intron 1 of 2)	1368	NR_157807	102724720		NR_157807		LOC102724720	-	uncharacterized LOC102724720	ncRNA
169679	chr3	171980521	171981180	+	0	NA	Intergenic	Intergenic	-58728	NM_022763	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
36064	chr11	2954251	2954780	+	0	NA	intron (NM_001369382, intron 13 of 15).2	intron (NM_001369382, intron 13 of 15).2	9378	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
175571	chr4	75644071	75644630	+	0	NA	3' UTR (NM_203504, exon 11 of 11)	3' UTR (NM_203504, exon 11 of 11)	-13822	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
163764	chr3	52374271	52374430	+	0	NA	intron (NM_015512, intron 44 of 77)	intron (NM_015512, intron 44 of 77)	35658	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
145907	chr20	45967901	45968750	+	0	NA	exon (NM_022095, exon 4 of 28)	exon (NM_022095, exon 4 of 28)	3878	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
71245	chr14	105187901	105188300	+	0	NA	Intergenic	Intergenic	-6777	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
56399	chr12	113207451	113209380	+	0	NA	intron (NM_138451, intron 1 of 2)	intron (NM_138451, intron 1 of 2)	12679	NM_001330452	115811		NM_138451	ENSG00000166578	IQCD	4933433C09Rik|CFAP84|DRC10	IQ motif containing D	protein-coding
156353	chr22	40898871	40899300	+	0	NA	intron (NM_022098, intron 4 of 9)	MER21-int|LTR|ERVL	-36972	NM_145174	150353		NM_145174	ENSG00000172404	DNAJB7	DJ5|HSC3	DnaJ heat shock protein family (Hsp40) member B7	protein-coding
187592	chr5	142849951	142850050	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	18910	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
88331	chr16	84511101	84511900	+	0	NA	Intergenic	Intergenic	-6841	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
227311	chr9	89427551	89428330	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	51950	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
63870	chr14	21729721	21730530	+	0	NA	Intergenic	MER11C|LTR|ERVK	-59108	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
97736	chr17	44381501	44382100	+	0	NA	intron (NM_000419, intron 12 of 29)	AluJr|SINE|Alu	7849	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
93534	chr17	19043221	19043880	+	0	NA	intron (NM_001330148, intron 1 of 3)	AluSx|SINE|Alu	3407	NM_006613	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
52653	chr12	56295801	56296000	+	0	NA	intron (NM_004077, intron 1 of 10)	AluYf1|SINE|Alu	4430	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
150448	chr21	42465301	42466380	+	0	NA	Intergenic	Intergenic	30384	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
166920	chr3	125037571	125037930	+	0	NA	intron (NM_020733, intron 1 of 16)	intron (NM_020733, intron 1 of 16)	18247	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
38285	chr11	43314651	43315230	+	0	NA	intron (NM_001142931, intron 1 of 12)	intron (NM_001142931, intron 1 of 12)	2944	NR_024625	8539		NM_006595	ENSG00000166181	API5	AAC-11|AAC11	apoptosis inhibitor 5	protein-coding
145657	chr20	44915251	44915430	+	0	NA	intron (NM_001372179, intron 2 of 14)	intron (NM_001372179, intron 2 of 14)	5280	NR_134987	80336		NM_001124756	ENSG00000101104	PABPC1L	C20orf119|EPAB|PABPC1L1|dJ1069P2.3	poly(A) binding protein cytoplasmic 1 like	protein-coding
57918	chr12	123511971	123512500	+	0	NA	intron (NM_178314, intron 2 of 6)	(TG)n|Simple_repeat|Simple_repeat	7991	NM_001319244	353116		NM_178314	ENSG00000188026	RILPL1	GOSPEL|OPDM4|RLP1	Rab interacting lysosomal protein like 1	protein-coding
64794	chr14	34864101	34864500	+	0	NA	intron (NM_013448, intron 2 of 26)	AluSz6|SINE|Alu	-9891	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
42774	chr11	72750171	72750780	+	0	NA	intron (NM_001040118, intron 1 of 34)	intron (NM_001040118, intron 1 of 34)	1914	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
173648	chr4	13539851	13540150	+	0	NA	TTS (NM_001189)	TTS (NM_001189)	4508	NM_001189	579		NM_001189	ENSG00000109705	NKX3-2	BAPX1|NKX3.2|NKX3B|SMMD	NK3 homeobox 2	protein-coding
128807	chr2	62475101	62476030	+	0	NA	Intergenic	Intergenic	30630	NM_198276	200728		NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
168369	chr3	141901221	141901480	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	24707	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
224422	chr9	15232071	15232530	+	0	NA	intron (NM_152574, intron 2 of 19)	L1PB4|LINE|L1	17918	NM_001168342	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
155528	chr22	38698271	38698880	+	0	NA	intron (NM_014876, intron 2 of 4)	AmnSINE1|SINE|5S-Deu-L2	2368	NM_001360236	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
76651	chr15	75641771	75642080	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1701	NM_018285	55272		NM_018285	ENSG00000177971	IMP3	BRMS2|C15orf12|MRPS4	IMP U3 small nucleolar ribonucleoprotein 3	protein-coding
178767	chr4	153365001	153365250	+	0	NA	intron (NR_045605, intron 6 of 9)	intron (NR_045605, intron 6 of 9)	20437	NR_045605	84057		NM_032117	ENSG00000121211	MND1	GAJ	meiotic nuclear divisions 1	protein-coding
31593	chr10	97355501	97356030	+	0	NA	TTS (NM_001284337)	TTS (NM_001284337)	-21036	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
42615	chr11	72201101	72201500	+	0	NA	Intergenic	(TATACACG)n|Simple_repeat|Simple_repeat	9160	NM_016729	2348		NM_000802	ENSG00000110195	FOLR1	FBP|FOLR|FRalpha|NCFTD	folate receptor alpha	protein-coding
43580	chr11	83074651	83075450	+	0	NA	Intergenic	Intergenic	2984	NR_038903	100506233		NR_038903		RAB30-DT	RAB30-AS1	RAB30 divergent transcript	ncRNA
144771	chr20	36621651	36621750	+	0	NA	intron (NM_175077, intron 5 of 7)	A-rich|Low_complexity|Low_complexity	15921	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
233216	chr9	137231021	137231450	+	0	NA	intron (NM_080877, intron 1 of 12)	intron (NM_080877, intron 1 of 12)	302	NM_080877	142680		NM_080877	ENSG00000198569	SLC34A3	HHRH|NPT2C|NPTIIc	solute carrier family 34 member 3	protein-coding
171580	chr3	197004671	197004830	+	0	NA	TTS (NR_038285)	TTS (NR_038285)	1844	NR_038285	100507057		NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1|PLANE	MELTF antisense RNA 1	ncRNA
77892	chr15	89128751	89128850	+	0	NA	intron (NM_152924, intron 3 of 10)	intron (NM_152924, intron 3 of 10)	40344	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
24213	chr1	236104701	236104900	+	0	NA	Intergenic	Intergenic	-37739	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
222860	chr8	142693971	142694150	+	0	NA	Intergenic	Intergenic	-6051	NM_001160354	54742		NM_017527	ENSG00000160886	LY6K	CT97|HSJ001348|URLC10|ly-6K	lymphocyte antigen 6 family member K	protein-coding
77923	chr15	89314721	89315250	+	0	NA	intron (NM_018193, intron 35 of 36)	AluJr|SINE|Alu	11825	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
106276	chr18	12598571	12598730	+	0	NA	intron (NM_001128626, intron 2 of 16)	intron (NM_001128626, intron 2 of 16)	58082	NM_001128627	56907		NM_020148	ENSG00000134278	SPIRE1	Spir-1	spire type actin nucleation factor 1	protein-coding
184243	chr5	96664321	96665030	+	0	NA	intron (NM_001375317, intron 1 of 30)	intron (NM_001375317, intron 1 of 30)	1650	NM_001330629	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
11623	chr1	91729821	91730450	+	0	NA	intron (NR_036634, intron 6 of 17)	intron (NR_036634, intron 6 of 17)	156016	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
196342	chr6	43179251	43179630	+	0	NA	3' UTR (NM_003131, exon 7 of 7)	3' UTR (NM_003131, exon 7 of 7)	-2756	NM_015089	23113		NM_015089	ENSG00000112659	CUL9	H7AP1|PARC	cullin 9	protein-coding
184327	chr5	96935801	96937830	+	0	NA	intron (NM_005575, intron 1 of 17)	intron (NM_005575, intron 1 of 17)	735	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
190205	chr5	178218201	178219580	+	0	NA	intron (NM_153373, intron 8 of 12)	L1ME3F|LINE|L1	13912	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
36916	chr11	10799671	10801030	+	0	NA	intron (NM_001172705, intron 17 of 21)	intron (NM_001172705, intron 17 of 21)	1258	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
27732	chr10	35089771	35091050	+	0	NA	promoter-TSS (NM_003591)	promoter-TSS (NM_003591)	-69	NM_003591	8453		NM_003591	ENSG00000108094	CUL2	-	cullin 2	protein-coding
171669	chr3	197710601	197711200	+	0	NA	intron (NM_014687, intron 2 of 19)	AluSx4|SINE|Alu	26004	NM_014687	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
182547	chr5	65734971	65735130	+	0	NA	intron (NM_020726, intron 1 of 12)	THE1C|LTR|ERVL-MaLR	12845	NM_020726	57486		NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
220730	chr8	102102521	102102800	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	21674	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
180829	chr5	32530471	32530630	+	0	NA	Intergenic	AluJb|SINE|Alu	-55007	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
91363	chr17	4537071	4538630	+	0	NA	3' UTR (NM_001124758, exon 13 of 13)	3' UTR (NM_001124758, exon 13 of 13)	17534	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
178510	chr4	150827121	150827400	+	0	NA	intron (NM_001367550, intron 30 of 56)	Tigger2|DNA|TcMar-Tigger	188007	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
83767	chr16	28718371	28718750	+	0	NA	intron (NM_001286478, intron 8 of 20)	L1ME1|LINE|L1	-5692	NR_106922	102465520		NR_106922	ENSG00000275429	MIR6862-1	hsa-mir-6862-1	microRNA 6862-1	ncRNA
154770	chr22	36523621	36524080	+	0	NA	intron (NR_156418, intron 5 of 14)	intron (NR_156418, intron 5 of 14)	5316	NM_003753	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
179288	chr4	177308051	177308450	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-1624	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
20649	chr1	200040551	200040950	+	0	NA	intron (NM_205860, intron 2 of 7)	CpG	-2075	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
127281	chr2	38728021	38729600	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	22551	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
152747	chr22	21726421	21727150	+	0	NA	intron (NM_013313, intron 1 of 4)	intron (NM_013313, intron 1 of 4)	9009	NM_013313	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
109746	chr19	1109771	1110450	+	0	NA	intron (NM_001100122, intron 23 of 28).2	intron (NM_001100122, intron 23 of 28).2	5460	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
184570	chr5	102800451	102800550	+	0	NA	intron (NM_001364588, intron 1 of 24)	MIR|SINE|MIR	-7698	NM_001364582	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
141544	chr2	241336271	241336430	+	0	NA	intron (NM_001321029, intron 6 of 13)	intron (NM_001321029, intron 6 of 13)	-19935	NM_001282984	9855		NM_014808	ENSG00000006607	FARP2	FIR|FRG|PLEKHC3	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein-coding
173960	chr4	25937921	25938380	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	23958	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
230662	chr9	128706951	128707350	+	0	NA	intron (NM_001317926, intron 5 of 21)	intron (NM_001317926, intron 5 of 21)	4647	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
175191	chr4	56504121	56504380	+	0	NA	promoter-TSS (NM_206919)	promoter-TSS (NM_206919)	-959	NM_206919	132946		NM_206919	ENSG00000196503	ARL9	-	ADP ribosylation factor like GTPase 9	protein-coding
70034	chr14	100103421	100104200	+	0	NA	intron (NM_016337, intron 3 of 13)	L2b|LINE|L2	5704	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
192209	chr6	17815251	17815580	+	0	NA	intron (NM_001105568, intron 17 of 37)	LTR13|LTR|ERVK	108372	NR_134618	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
89046	chr16	88435251	88436100	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-17605	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
119482	chr19	40449871	40450230	+	0	NA	intron (NM_000713, intron 4 of 4)	AluSc|SINE|Alu	-5715	NM_203344	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
37159	chr11	13772421	13772760	+	0	NA	Intergenic	Intergenic	-11796	NR_149108	105376562		NR_149108	ENSG00000255411	LINC02548	-	long intergenic non-protein coding RNA 2548	ncRNA
48133	chr12	7903521	7903780	+	0	NA	Intergenic	AluSq|SINE|Alu	-12454	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
53854	chr12	69738151	69739300	+	0	NA	promoter-TSS (NR_103519)	promoter-TSS (NR_103519)	-135	NM_175624	117177		NM_022456	ENSG00000127328	RAB3IP	RABIN3|RABIN8	RAB3A interacting protein	protein-coding
182825	chr5	69188501	69190000	+	0	NA	promoter-TSS (NM_022909)	promoter-TSS (NM_022909)	-333	NM_022909	64946		NM_022909	ENSG00000153044	CENPH	-	centromere protein H	protein-coding
52334	chr12	54983401	54983980	+	0	NA	intron (NM_001136030, intron 1 of 10)	intron (NM_001136030, intron 1 of 10)	1072	NR_147062	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
196193	chr6	42739301	42739750	+	0	NA	Intergenic	AluSx|SINE|Alu	6578	NM_003192	6903		NM_003192	ENSG00000124659	TBCC	CFC	tubulin folding cofactor C	protein-coding
136450	chr2	176852501	176853850	+	0	NA	Intergenic	Intergenic	215421	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
147575	chr20	61101371	61101730	+	0	NA	Intergenic	Intergenic	22486	NR_109919	100506470		NR_109919	ENSG00000229606	LINC01718	-	long intergenic non-protein coding RNA 1718	ncRNA
120714	chr19	45253521	45254530	+	0	NA	intron (NM_001199867, intron 1 of 16)	intron (NM_001199867, intron 1 of 16)	2754	NM_031417	57787		NM_031417	ENSG00000007047	MARK4	MARK4L|MARK4S|MARKL1|MARKL1L|PAR-1D	microtubule affinity regulating kinase 4	protein-coding
237855	chrX	130144751	130144850	+	0	NA	intron (NR_132647, intron 5 of 15)	intron (NR_132647, intron 5 of 15)	-6760	NM_001130846	9131		NM_004208	ENSG00000156709	AIFM1	AIF|AUNX1|CMT2D|CMTX4|COWCK|COXPD6|DFNX5|NADMR|NAMSD|PDCD8|SEMDHL	apoptosis inducing factor mitochondria associated 1	protein-coding
167111	chr3	127637571	127638280	+	0	NA	intron (NM_015720, intron 1 of 7)	intron (NM_015720, intron 1 of 7)	8740	NM_015720	50512		NM_015720	ENSG00000114631	PODXL2	EG|PODLX2	podocalyxin like 2	protein-coding
59179	chr13	22024571	22024930	+	0	NA	Intergenic	L1ME2|LINE|L1	-146590	NR_047040	100874182		NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
207554	chr7	44850421	44850850	+	0	NA	Intergenic	L2a|LINE|L2	-2509	NM_138635	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
127000	chr2	36803121	36803580	+	0	NA	intron (NM_053276, intron 13 of 15)	LTR67B|LTR|ERVL	106643	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
18548	chr1	162547871	162549030	+	0	NA	Intergenic	Intergenic	-12990	NM_001324115	6675		NM_003115	ENSG00000117143	UAP1	AGX|AGX1|AGX2|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
140746	chr2	234482901	234484800	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	13199	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
234153	chrX	10158301	10158600	+	0	NA	5' UTR (NM_001256944, exon 2 of 11)	5' UTR (NM_001256944, exon 2 of 11)	1475	NM_001830	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
156059	chr22	39989271	39989430	+	0	NA	Intergenic	Intergenic	-5604	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
74934	chr15	63744021	63744480	+	0	NA	intron (NM_003922, intron 12 of 77)	L1M1|LINE|L1	89698	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
133386	chr2	118185501	118186850	+	0	NA	intron (NR_144530, intron 1 of 2)	intron (NR_144530, intron 1 of 2)	211	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
128586	chr2	60914601	60915230	+	0	NA	intron (NM_001291746, intron 4 of 9)	AluYh3|SINE|Alu	33341	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
15116	chr1	148647151	148647250	+	0	NA	intron (NM_001364007, intron 1 of 4)	intron (NM_001364007, intron 1 of 4)	32546	NM_001364007	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
185728	chr5	132070551	132070980	+	0	NA	Intergenic	Intergenic	-3024	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
216877	chr8	22642551	22643650	+	0	NA	promoter-TSS (NR_027715)	promoter-TSS (NR_027715)	-891	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
70817	chr14	103564271	103564830	+	0	NA	intron (NR_126431, intron 2 of 5)	intron (NR_126431, intron 2 of 5)	1590	NM_001302652	84334		NM_001302652	ENSG00000256053	COA8	APOP|APOP1|APOPT1|C14orf153|MC4DN17	cytochrome c oxidase assembly factor 8	protein-coding
193532	chr6	30594471	30595150	+	0	NA	Intergenic	L2c|LINE|L2	10478	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
189350	chr5	172224021	172224680	+	0	NA	intron (NM_152277, intron 2 of 2)	AluSz|SINE|Alu	30178	NM_001171183	285588		NM_001171183	ENSG00000214360	EFCAB9	-	EF-hand calcium binding domain 9	protein-coding
157792	chr22	46772571	46772930	+	0	NA	intron (NR_104292, intron 2 of 13)	AluSc|SINE|Alu	-1177	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
40516	chr11	64282001	64282500	+	0	NA	intron (NM_032989, intron 2 of 3)	intron (NM_032989, intron 2 of 3)	2415	NM_032989	572		NM_004322	ENSG00000002330	BAD	BBC2|BCL2L8	BCL2 associated agonist of cell death	protein-coding
117712	chr19	29263001	29263770	+	0	NA	Intergenic	Intergenic	-50234	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
147462	chr20	59031451	59032950	+	0	NA	TTS (NM_001256403)	TTS (NM_001256403)	135	NM_006886	514		NM_006886	ENSG00000124172	ATP5F1E	ATP5E|ATPE|MC5DN3	ATP synthase F1 subunit epsilon	protein-coding
121831	chr19	48110301	48111500	+	0	NA	promoter-TSS (NM_001159323)	promoter-TSS (NM_001159323)	-48	NM_001159322	8605		NM_003706	ENSG00000105499	PLA2G4C	CPLA2-gamma	phospholipase A2 group IVC	protein-coding
213819	chr7	141177201	141177400	+	0	NA	intron (NM_001195278, intron 1 of 3)	L1PA7|LINE|L1	103236	NM_001195278	100507421		NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
120613	chr19	45033451	45034880	+	0	NA	intron (NM_006509, intron 8 of 10)	(AAAT)n|Simple_repeat|Simple_repeat	-4880	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
9601	chr1	52354171	52354530	+	0	NA	intron (NM_032449, intron 23 of 23)	MIRc|SINE|MIR	11855	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
237961	chrX	133698371	133698530	+	0	NA	intron (NM_001164619, intron 3 of 6)	intron (NM_001164619, intron 3 of 6)	-198993	NR_148713	110806308		NR_148713	ENSG00000286096	GPC3-AS1	-	GPC3 antisense RNA 1	ncRNA
121516	chr19	47212421	47212680	+	0	NA	Intergenic	Intergenic	-14392	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
168063	chr3	137121771	137121930	+	0	NA	Intergenic	L1PA15-16|LINE|L1	163867	NM_144717	53833		NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
228169	chr9	97038701	97039430	+	0	NA	promoter-TSS (NM_001333)	promoter-TSS (NM_001333)	77	NM_001333	1515		NM_001333	ENSG00000136943	CTSV	CATL2|CTSL2|CTSU	cathepsin V	protein-coding
22264	chr1	212678171	212678780	+	0	NA	Intergenic	MIR3|SINE|MIR	21365	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
23970	chr1	235165521	235165950	+	0	NA	Intergenic	AluYm1|SINE|Alu	-4485	NR_144491	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
5819	chr1	26624451	26624750	+	0	NA	Intergenic	AluY|SINE|Alu	69531	NR_135804	101928728		NR_135804	ENSG00000260063	LOC101928728	-	uncharacterized LOC101928728	ncRNA
19905	chr1	184035801	184036000	+	0	NA	intron (NM_001303421, intron 1 of 11)	intron (NM_001303421, intron 1 of 11)	1828	NM_015101	23127		NM_015101	ENSG00000198756	COLGALT2	C1orf17|ColGalT 2|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
208425	chr7	66762501	66762900	+	0	NA	intron (NM_001367731, intron 3 of 10)	intron (NM_001367731, intron 3 of 10)	6818	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
114987	chr19	14041171	14041930	+	0	NA	intron (NM_004843, intron 4 of 13)	MIR|SINE|MIR	9788	NM_004843	9466		NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
201628	chr6	149448971	149449130	+	0	NA	3' UTR (NM_207360, exon 6 of 6)	3' UTR (NM_207360, exon 6 of 6)	35964	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
166452	chr3	114155371	114155630	+	0	NA	intron (NM_033663, intron 3 of 7)	intron (NM_033663, intron 3 of 7)	23276	NM_001290809	1814		NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
202754	chr6	159039121	159040000	+	0	NA	intron (NM_054114, intron 7 of 9)	intron (NM_054114, intron 7 of 9)	2793	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
218702	chr8	58581901	58582250	+	0	NA	3' UTR (NM_001330537, exon 10 of 10)	3' UTR (NM_001330537, exon 10 of 10)	28814	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
230916	chr9	129307551	129307850	+	0	NA	Intergenic	Intergenic	-13316	NR_149714	414318		NR_149714		LINC02913	C9orf106	long intergenic non-protein coding RNA 2913	ncRNA
58042	chr12	124458871	124459030	+	0	NA	intron (NM_001077261, intron 7 of 47)	intron (NM_001077261, intron 7 of 47)	108662	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
8767	chr1	42746821	42747480	+	0	NA	exon (NM_001243246, exon 14 of 14)	exon (NM_001243246, exon 14 of 14)	-6896	NM_001185117	149461		NM_148960	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
124106	chr19	55656971	55657530	+	0	NA	intron (NM_007279, intron 1 of 11)	intron (NM_007279, intron 1 of 11)	2215	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
235558	chrX	47252971	47253130	+	0	NA	Intergenic	L1MEc|LINE|L1	20041	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
193905	chr6	31626851	31627300	+	0	NA	exon (NM_080686, exon 11 of 31).2	exon (NM_080686, exon 11 of 31).2	3996	NR_002971	677820		NR_002971	ENSG00000200816	SNORA38	ACA38	small nucleolar RNA, H/ACA box 38	snoRNA
35785	chr11	2170171	2170530	+	0	NA	intron (NM_000360, intron 1 of 12)	intron (NM_000360, intron 1 of 12)	1465	NM_199293	7054		NM_000360	ENSG00000180176	TH	DYT14|DYT5b|TYH	tyrosine hydroxylase	protein-coding
221080	chr8	117044701	117044980	+	0	NA	intron (NM_001172815, intron 2 of 10)	intron (NM_001172815, intron 2 of 10)	-90155	NM_001172814	169026		NM_173851	ENSG00000164756	SLC30A8	ZNT8|ZnT-8	solute carrier family 30 member 8	protein-coding
145878	chr20	45943921	45944650	+	0	NA	intron (NM_022104, intron 10 of 16)	Tigger12|DNA|TcMar-Tigger	9602	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
224600	chr9	20375601	20375800	+	0	NA	intron (NM_001286691, intron 5 of 10)	AluYm1|SINE|Alu	35538	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
129242	chr2	68361971	68363080	+	0	NA	Intergenic	Intergenic	-2757	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
14597	chr1	145232851	145234730	+	0	NA	Intergenic	Intergenic	8409	NM_001164262	728945		NM_001164262	ENSG00000279782	PPIAL4F	-	peptidylprolyl isomerase A like 4F	protein-coding
58554	chr12	132305571	132305730	+	0	NA	intron (NM_001122636, intron 1 of 10)	CpG	23939	NM_001122636	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
160166	chr3	22564171	22564330	+	0	NA	Intergenic	Intergenic	607111	NR_046876	100874221		NR_046876	ENSG00000223351	ZNF385D-AS2	-	ZNF385D antisense RNA 2	ncRNA
111057	chr19	3116201	3116600	+	0	NA	intron (NM_002067, intron 4 of 6)	MLT1C|LTR|ERVL-MaLR	-19633	NM_002068	2769		NM_002068	ENSG00000060558	GNA15	GNA16|HG1L	G protein subunit alpha 15	protein-coding
236323	chrX	68894471	68895280	+	0	NA	Intergenic	Intergenic	65854	NM_004429	1947		NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
216371	chr8	17696971	17697980	+	0	NA	5' UTR (NM_020749, exon 1 of 10)	5' UTR (NM_020749, exon 1 of 10)	262	NM_020749	57509		NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1	microtubule associated scaffold protein 1	protein-coding
128978	chr2	64675921	64676180	+	0	NA	Intergenic	Intergenic	-22137	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
117441	chr19	19654401	19655000	+	0	NA	exon (NM_020410, exon 13 of 26)	exon (NM_020410, exon 13 of 26)	8976	NM_020410	57130		NM_020410	ENSG00000105726	ATP13A1	ATP13A|CGI-152	ATPase 13A1	protein-coding
236247	chrX	65744071	65744630	+	0	NA	Intergenic	MER41B|LTR|ERV1	76696	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
106249	chr18	12076471	12076650	+	0	NA	Intergenic	(GCA)n|Simple_repeat|Simple_repeat	-17283	NM_001277333	342850		NM_001277333	ENSG00000181626	ANKRD62	DKFZp779B1634	ankyrin repeat domain 62	protein-coding
12887	chr1	110338071	110340700	+	0	NA	promoter-TSS (NR_036595)	promoter-TSS (NR_036595)	8	NM_022768	64783		NM_014092	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding
121337	chr19	46782971	46783130	+	0	NA	intron (NM_005628, intron 3 of 7)	L2b|LINE|L2	1764	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
193655	chr6	30903971	30905030	+	0	NA	Intergenic	L1M5|LINE|L1	-3707	NM_001517	2968		NM_001517	ENSG00000213780	GTF2H4	P52|TFB2|TFIIH	general transcription factor IIH subunit 4	protein-coding
228010	chr9	95627001	95627200	+	0	NA	Intergenic	Intergenic	-110129	NM_001083602	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
59377	chr13	24741301	24741530	+	0	NA	Intergenic	Intergenic	-22754	NM_001184993	56163		NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
112512	chr19	6479401	6479830	+	0	NA	intron (NM_024898, intron 4 of 22)	intron (NM_024898, intron 4 of 22)	2172	NM_001290331	79958		NM_024898	ENSG00000205744	DENND1C	FAM31C	DENN domain containing 1C	protein-coding
224950	chr9	33041001	33041930	+	0	NA	TTS (NM_018225)	TTS (NM_018225)	16192	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
152592	chr22	21267971	21268150	+	0	NA	intron (NM_001351304, intron 1 of 16)	CpG	9802	NM_001351304	728441		NM_001351304		GGT2P	GGT|GGT 2|GGT2	gamma-glutamyltransferase 2, pseudogene	pseudo
220398	chr8	100252151	100252450	+	0	NA	Intergenic	Intergenic	49893	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
24335	chr1	239501671	239502630	+	0	NA	intron (NR_164748, intron 2 of 8)	L1PB1|LINE|L1	115582	NM_001375982	1131		NM_000740	ENSG00000133019	CHRM3	EGBRS|HM3|PBS|m3AChR	cholinergic receptor muscarinic 3	protein-coding
54290	chr12	89333851	89334150	+	0	NA	Intergenic	Intergenic	18501	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
221201	chr8	120775121	120776050	+	0	NA	intron (NR_125419, intron 4 of 4)	intron (NR_125419, intron 4 of 4)	14332	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
211254	chr7	102670051	102670450	+	0	NA	intron (NM_032959, intron 1 of 8)	MER20|DNA|hAT-Charlie	1485	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
86469	chr16	66947071	66949250	+	0	NA	Intergenic	CpG	12644	NM_198061	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
56029	chr12	110430351	110430680	+	0	NA	Intergenic	FLAM_C|SINE|Alu	19822	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
59668	chr13	28661321	28661580	+	0	NA	intron (NM_015932, intron 1 of 5)	AluJb|SINE|Alu	2320	NM_015932	51371		NM_015932	ENSG00000132963	POMP	C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1	proteasome maturation protein	protein-coding
84386	chr16	30308471	30308930	+	0	NA	intron (NR_002453, intron 1 of 12)	intron (NR_002453, intron 1 of 12)	26674	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
136044	chr2	172508271	172508430	+	0	NA	Intergenic	Intergenic	-42328	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
202653	chr6	158774771	158775400	+	0	NA	intron (NM_003379, intron 7 of 12)	AluSg|SINE|Alu	-10332	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
157547	chr22	45608721	45609100	+	0	NA	Intergenic	Intergenic	-3263	NR_131244	100506737		NR_131244	ENSG00000238120	LINC01589	TCONS_00029353	long intergenic non-protein coding RNA 1589	ncRNA
138728	chr2	213229851	213229950	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	54309	NR_161186	100130451		NR_144752		SPAG16-DT	-	SPAG16 divergent transcript	ncRNA
13848	chr1	117653051	117653550	+	0	NA	Intergenic	Intergenic	47252	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
198114	chr6	90350601	90351700	+	0	NA	Intergenic	Intergenic	38408	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
37357	chr11	15006171	15006400	+	0	NA	Intergenic	Intergenic	-33934	NM_001033952	796		NM_001741	ENSG00000110680	CALCA	CALC1|CGRP|CGRP-I|CGRP-alpha|CGRP1|CT|KC|PCT	calcitonin related polypeptide alpha	protein-coding
38496	chr11	45874421	45874880	+	0	NA	intron (NM_021117, intron 11 of 11)	L2a|LINE|L2	-11001	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
54265	chr12	88052771	88052930	+	0	NA	intron (NM_025114, intron 52 of 53)	MIRb|SINE|MIR	17314	NM_001009894	91298		NM_001009894	ENSG00000133641	RLIG1	C12orf29|Rnl	RNA 5'-phosphate and 3'-OH ligase 1	protein-coding
142775	chr20	12582971	12583130	+	0	NA	Intergenic	L1PA2|LINE|L1	353913	NR_109872	102606466		NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
191184	chr6	5175721	5176380	+	0	NA	intron (NM_001164841, intron 2 of 3)	MLT1G|LTR|ERVL-MaLR	-27728	NR_037462	100500900		NR_037462	ENSG00000265083	MIR3691	mir-3691	microRNA 3691	ncRNA
65550	chr14	51930801	51931000	+	0	NA	intron (NM_053064, intron 2 of 3)	MSTB|LTR|ERVL-MaLR	-12329	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
13141	chr1	111670251	111670550	+	0	NA	intron (NM_001370217, intron 1 of 7)	AluJb|SINE|Alu	5606	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
68621	chr14	89649401	89649600	+	0	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	-30335	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
202903	chr6	160014101	160014780	+	0	NA	intron (NM_000876, intron 4 of 47)	intron (NM_000876, intron 4 of 47)	-6776	NR_047514	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
34627	chr10	133304771	133305380	+	0	NA	intron (NR_046330, intron 1 of 17)	LTR13|LTR|ERVK	3797	NM_006659	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
92943	chr17	16990771	16991800	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	2956	NR_146886	105371562		NR_146886	ENSG00000230969	LINC02090	-	long intergenic non-protein coding RNA 2090	ncRNA
60768	chr13	45108771	45109030	+	0	NA	intron (NR_120424, intron 2 of 2)	MER61A|LTR|ERV1	2621	NR_120424	101929259		NR_120424		LOC101929259	-	uncharacterized LOC101929259	ncRNA
61066	chr13	48305601	48305800	+	0	NA	intron (NM_000321, intron 1 of 26)	intron (NM_000321, intron 1 of 26)	1949	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
228237	chr9	97923501	97924780	+	0	NA	Intergenic	Intergenic	-1640	NM_001371661	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
184821	chr5	111270851	111271150	+	0	NA	intron (NM_001744, intron 1 of 10)	THE1D|LTR|ERVL-MaLR	46616	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
82551	chr16	18555101	18555500	+	0	NA	intron (NM_173614, intron 2 of 30).2	AluJr|SINE|Alu	6812	NM_173614	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
198636	chr6	107791671	107791830	+	0	NA	intron (NM_198081, intron 1 of 7)	AluJb|SINE|Alu	32563	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
229927	chr9	126631971	126632130	+	0	NA	intron (NM_001174147, intron 2 of 7)	MIRb|SINE|MIR	18122	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
162813	chr3	49127521	49127900	+	0	NA	intron (NM_002292, intron 15 of 31)	AluY|SINE|Alu	5340	NM_002292	3913		NM_002292	ENSG00000172037	LAMB2	LAMS|NPHS5|PIERS	laminin subunit beta 2	protein-coding
165484	chr3	99822421	99822880	+	0	NA	intron (NR_110821, intron 1 of 2)	AluSq|SINE|Alu	1215	NR_110821	101929357		NR_110821		HP09053	-	uncharacterized LOC101929357	ncRNA
26084	chr10	13117701	13118530	+	0	NA	intron (NM_001008212, intron 6 of 14)	intron (NM_001008212, intron 6 of 14)	17952	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
206224	chr7	28853901	28854500	+	0	NA	Intergenic	CpG	104130	NM_014817	9865		NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
179794	chr5	372851	372950	+	0	NA	intron (NR_165159, intron 5 of 13)	intron (NR_165159, intron 5 of 13)	50290	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
157825	chr22	47206851	47207350	+	0	NA	Intergenic	Intergenic	-138471	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
98834	chr17	48424651	48425250	+	0	NA	intron (NM_001075099, intron 1 of 12)	AluSc|SINE|Alu	5264	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
68570	chr14	89421271	89421630	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	4096	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
219145	chr8	66385351	66385750	+	0	NA	Intergenic	Intergenic	43427	NR_040434	100505676		NM_001242759	ENSG00000246145	RRS1-DT	RRS1-AS1	RRS1 divergent transcript	ncRNA
34974	chr11	501171	501430	+	0	NA	intron (NM_203389, intron 2 of 9).2	L1MC4a|LINE|L1	5468	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
136922	chr2	189782121	189782730	+	0	NA	exon (NM_001128150, exon 2 of 4)	exon (NM_001128150, exon 2 of 4)	1568	NM_001371388	94101		NM_016467	ENSG00000128699	ORMDL1	-	ORMDL sphingolipid biosynthesis regulator 1	protein-coding
186157	chr5	134178401	134178600	+	0	NA	Intergenic	Intergenic	-1467	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
140779	chr2	235595421	235595680	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	-77629	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
29596	chr10	71740901	71741400	+	0	NA	intron (NM_022124, intron 35 of 67)	intron (NM_022124, intron 35 of 67)	-3300	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
99261	chr17	49730051	49730400	+	0	NA	intron (NM_030802, intron 2 of 7)	intron (NM_030802, intron 2 of 7)	-22261	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
60539	chr13	41459741	41460250	+	0	NA	intron (NM_014059, intron 2 of 4)	intron (NM_014059, intron 2 of 4)	2445	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
27474	chr10	32043351	32043450	+	0	NA	intron (NM_004521, intron 2 of 25)	MIR|SINE|MIR	13025	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
49737	chr12	31652921	31653830	+	0	NA	intron (NM_001135864, intron 1 of 3)	intron (NM_001135864, intron 1 of 3)	-5828	NM_173802	254013		NM_173802	ENSG00000139160	ETFBKMT	C12orf72|ETFB-KMT|METTL20	electron transfer flavoprotein subunit beta lysine methyltransferase	protein-coding
93115	chr17	17691321	17692150	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	10277	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
48880	chr12	12481621	12482730	+	0	NA	intron (NM_030640, intron 5 of 6)	intron (NM_030640, intron 5 of 6)	80688	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
123682	chr19	55007601	55007830	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	30549	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
39362	chr11	59563301	59564230	+	0	NA	Intergenic	MLT2C2|LTR|ERVL	31393	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
103763	chr17	78978001	78978500	+	0	NA	intron (NM_005567, intron 1 of 5)	MER5A1|DNA|hAT-Charlie	1673	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
187747	chr5	143825001	143825430	+	0	NA	Intergenic	Intergenic	13054	NM_021182	57824		NM_021182	ENSG00000158497	HMHB1	HB-1|HB-1Y|HLA-HB1	histocompatibility minor HB-1	protein-coding
94204	chr17	28597071	28597450	+	0	NA	intron (NM_006461, intron 2 of 23)	AluSz|SINE|Alu	1765	NM_006461	10615		NM_006461	ENSG00000076382	SPAG5	DEEPEST|MAP126|hMAP126	sperm associated antigen 5	protein-coding
227817	chr9	93296971	93297330	+	0	NA	intron (NM_001282394, intron 23 of 29)	intron (NM_001282394, intron 23 of 29)	49153	NR_166069	445577		NM_001098808		FAM120A2P	C9orf129|bA165J3.3	family with sequence similarity 120A2, pseudogene	pseudo
126772	chr2	30254051	30254230	+	0	NA	intron (NM_030915, intron 2 of 2)	MER44A|DNA|TcMar-Tigger	22606	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
179693	chr4	190092501	190092900	+	0	NA	Intergenic	LSAU|Satellite|Satellite	27471	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
55574	chr12	106267451	106267950	+	0	NA	Intergenic	MIRb|SINE|MIR	-19680	NM_006825	10970		NM_006825	ENSG00000136026	CKAP4	CLIMP-63|CLIMP63|ERGIC-63|p63	cytoskeleton associated protein 4	protein-coding
42432	chr11	69242471	69242830	+	0	NA	Intergenic	Intergenic	-51505	NM_001293294	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
182792	chr5	68661271	68661430	+	0	NA	Intergenic	Intergenic	368577	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
119995	chr19	41920121	41920380	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	8199	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
297	chr1	958551	959900	+	0	NA	promoter-TSS (NM_015658)	promoter-TSS (NM_015658)	31	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
159915	chr3	16941571	16941730	+	0	NA	intron (NM_015184, intron 1 of 5)	L2c|LINE|L2	8454	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
216658	chr8	22131871	22132030	+	0	NA	promoter-TSS (NM_005144)	promoter-TSS (NM_005144)	-898	NM_018411	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
161705	chr3	43638701	43639200	+	0	NA	intron (NM_001346468, intron 1 of 12)	MLT1F1|LTR|ERVL-MaLR	-16873	NM_001346463	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
45929	chr11	121023621	121024680	+	0	NA	promoter-TSS (NM_001363644)	promoter-TSS (NM_001363644)	48	NM_001378761	116804918		NM_001378761		TBCEL-TECTA	-	TBCEL-TECTA readthrough	protein-coding
170260	chr3	184257821	184258330	+	0	NA	intron (NM_014693, intron 2 of 18)	intron (NM_014693, intron 2 of 18)	3478	NM_033259	94032		NM_033259	ENSG00000163888	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin dependent protein kinase II inhibitor 2	protein-coding
41921	chr11	67287141	67287880	+	0	NA	TTS (NM_001619)	TTS (NM_001619)	-1793	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
98017	chr17	45391671	45392630	+	0	NA	Intergenic	AluJb|SINE|Alu	18236	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
160198	chr3	23826201	23826400	+	0	NA	intron (NM_003341, intron 3 of 5)	intron (NM_003341, intron 3 of 5)	15846	NM_001202476	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
103664	chr17	78784151	78784430	+	0	NA	Intergenic	Intergenic	-1948	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
128034	chr2	47366521	47366600	+	0	NA	Intergenic	AluSg|SINE|Alu	-2751	NM_002354	4072		NM_002354	ENSG00000119888	EPCAM	Ber-Ep4|BerEp4|DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|LYNCH8|M4S1|MIC18|MK-1|MOC-31|TACSTD1|TROP1	epithelial cell adhesion molecule	protein-coding
30074	chr10	73877721	73878000	+	0	NA	Intergenic	Intergenic	-3269	NM_172171	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
99592	chr17	50531621	50531950	+	0	NA	promoter-TSS (NM_017957)	promoter-TSS (NM_017957)	-950	NM_017957	55040		NM_017957	ENSG00000049283	EPN3	-	epsin 3	protein-coding
109779	chr19	1140071	1140230	+	0	NA	intron (NM_014963, intron 4 of 31)	AluY|SINE|Alu	-7929	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
220366	chr8	99861151	99861450	+	0	NA	intron (NM_152564, intron 57 of 61)	AluJb|SINE|Alu	32407	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
106027	chr18	8603801	8604200	+	0	NA	Intergenic	L1MEf|LINE|L1	-5445	NM_001025300	201475		NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding
56197	chr12	111447651	111447950	+	0	NA	exon (NM_001291424, exon 6 of 7)	exon (NM_001291424, exon 6 of 7)	12938	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
236029	chrX	55181621	55181700	+	0	NA	3' UTR (NM_001190708, exon 1 of 1)	3' UTR (NM_001190708, exon 1 of 1)	782	NM_001190708	100463488		NM_001190708		MTRNR2L10	HN10	MT-RNR2 like 10 (pseudogene)	pseudo
154123	chr22	31158121	31158380	+	0	NA	Intergenic	MER90|LTR|ERV1	1869	NR_037496	100500901		NR_037496	ENSG00000264141	MIR3928	mir-3928	microRNA 3928	ncRNA
216908	chr8	22697151	22697630	+	0	NA	Intergenic	Intergenic	-3910	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
128301	chr2	54631051	54631350	+	0	NA	exon (NM_003128, exon 16 of 36)	exon (NM_003128, exon 16 of 36)	72806	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
133501	chr2	119960671	119961030	+	0	NA	exon (NM_002830, exon 23 of 27)	exon (NM_002830, exon 23 of 27)	-52227	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
102302	chr17	75347001	75347880	+	0	NA	intron (NM_203506, intron 2 of 4)	LTR27C|LTR|ERV1	-57991	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
118354	chr19	35646571	35646730	+	0	NA	Intergenic	Intergenic	-1673	NM_001863	1340		NM_001863	ENSG00000126267	COX6B1	COX6B|COXG|COXVIb1|MC4DN7	cytochrome c oxidase subunit 6B1	protein-coding
21680	chr1	206711551	206711850	+	0	NA	intron (NM_032960, intron 1 of 9)	AluSz6|SINE|Alu	26795	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
42254	chr11	68125201	68125600	+	0	NA	Intergenic	Intergenic	-4012	NM_001376220	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
155865	chr22	39487371	39487530	+	0	NA	exon (NM_002409, exon 2 of 2)	exon (NM_002409, exon 2 of 2)	226	NM_001098270	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
995	chr1	1842951	1843250	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	47987	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
185539	chr5	131350871	131351850	+	0	NA	intron (NM_001375633, intron 2 of 5)	AluY|SINE|Alu	87307	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
234615	chrX	19827051	19827550	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	5851	NM_001353894	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
50623	chr12	48700001	48700650	+	0	NA	intron (NM_001240, intron 4 of 8)	AluYm1|SINE|Alu	16382	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
45205	chr11	117819301	117819800	+	0	NA	TTS (NM_001680)	TTS (NM_001680)	-2036	NM_001367905	57453		NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
229174	chr9	114585851	114586450	+	0	NA	Intergenic	Intergenic	-1619	NM_004888	9550		NM_004888	ENSG00000136888	ATP6V1G1	ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10	ATPase H+ transporting V1 subunit G1	protein-coding
3513	chr1	16051901	16052100	+	0	NA	intron (NM_000085, intron 14 of 19)	intron (NM_000085, intron 14 of 19)	3238	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
66708	chr14	64293951	64295250	+	0	NA	promoter-TSS (NM_001437)	promoter-TSS (NM_001437)	-190	NM_001437	2100		NM_001437	ENSG00000140009	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8	estrogen receptor 2	protein-coding
234488	chrX	18424721	18426150	+	0	NA	promoter-TSS (NM_003159)	promoter-TSS (NM_003159)	-170	NM_003159	6792		NM_003159	ENSG00000008086	CDKL5	CFAP247|DEE2|EIEE2|ISSX|STK9	cyclin dependent kinase like 5	protein-coding
23472	chr1	228618701	228619230	+	0	NA	TTS (NR_023363).5	TTS (NR_023363).5	385	NR_023363	100169751		NR_023363	ENSG00000199352	RNA5S1	RN5S1	RNA, 5S ribosomal 1	rRNA
238005	chrX	134827221	134827880	+	0	NA	intron (NR_158606, intron 3 of 11)	intron (NR_158606, intron 3 of 11)	20313	NM_001170784	159091		NM_138819	ENSG00000156500	PABIR3	FAM122C	PABIR family member 3	protein-coding
79832	chr16	1436571	1437330	+	0	NA	intron (NM_001143980, intron 11 of 16)	intron (NM_001143980, intron 11 of 16)	5872	NM_001365310	105371045		NM_001365310	ENSG00000284395	PERCC1	DIAR11|ICR|gs104	proline and glutamate rich with coiled coil 1	protein-coding
112133	chr19	5606971	5607230	+	0	NA	intron (NM_014649, intron 9 of 20)	AluY|SINE|Alu	15676	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
68329	chr14	77591701	77592100	+	0	NA	intron (NM_004863, intron 2 of 11)	AluSq2|SINE|Alu	24737	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
74250	chr15	56931671	56932400	+	0	NA	intron (NM_207038, intron 3 of 19)	intron (NM_207038, intron 3 of 19)	12590	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
120155	chr19	42232801	42233000	+	0	NA	intron (NM_019884, intron 8 of 10)	intron (NM_019884, intron 8 of 10)	9702	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
29792	chr10	72280921	72281400	+	0	NA	Intergenic	AluSq2|SINE|Alu	7236	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
176942	chr4	103015821	103016450	+	0	NA	intron (NR_047513, intron 1 of 10)	AluSq2|SINE|Alu	3570	NR_047515	150159		NM_139173	ENSG00000164037	SLC9B1	NHA1|NHEDC1	solute carrier family 9 member B1	protein-coding
126576	chr2	28754421	28754850	+	0	NA	intron (NM_206876, intron 2 of 8)	intron (NM_206876, intron 2 of 8)	2805	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
128850	chr2	63854421	63855180	+	0	NA	intron (NM_001377529, intron 2 of 11)	intron (NM_001377529, intron 2 of 11)	12904	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
2291	chr1	8964121	8964380	+	0	NA	intron (NM_001270502, intron 3 of 5)	AluSc|SINE|Alu	18382	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
163064	chr3	49942501	49943500	+	0	NA	intron (NR_146071, intron 1 of 15)	L1MB4|LINE|L1	2850	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
145600	chr20	44613901	44614100	+	0	NA	intron (NM_001281444, intron 4 of 5)	L2c|LINE|L2	31421	NM_001281445	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
208316	chr7	66123201	66123600	+	0	NA	intron (NM_001040648, intron 1 of 2)	intron (NM_001040648, intron 1 of 2)	8553	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
224878	chr9	31597921	31598280	+	0	NA	Intergenic	Intergenic	-216610	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
22497	chr1	221736771	221737100	+	0	NA	promoter-TSS (NR_111939)	promoter-TSS (NR_111939)	-35	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
211817	chr7	108050071	108050230	+	0	NA	intron (NM_007356, intron 26 of 33)	MER58A|DNA|hAT-Charlie	-46989	NM_002291	3912		NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding
78594	chr15	93050001	93051000	+	0	NA	intron (NM_001166283, intron 3 of 3)	intron (NM_001166283, intron 3 of 3)	22656	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
180410	chr5	10357621	10358280	+	0	NA	intron (NM_001270661, intron 1 of 22)	L2a|LINE|L2	4255	NM_001270661	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
155951	chr22	39688821	39689280	+	0	NA	3' UTR (NM_021096, exon 37 of 37)	3' UTR (NM_021096, exon 37 of 37)	118297	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
166627	chr3	119560471	119560630	+	0	NA	promoter-TSS (NM_005191)	promoter-TSS (NM_005191)	-936	NM_005191	941		NM_005191	ENSG00000121594	CD80	B7|B7-1|B7.1|BB1|CD28LG|CD28LG1|LAB7	CD80 molecule	protein-coding
182596	chr5	66015621	66015880	+	0	NA	intron (NM_001253697, intron 7 of 25)	AluJr|SINE|Alu	-70177	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
15093	chr1	148525821	148526180	+	0	NA	Intergenic	Intergenic	-42698	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
49620	chr12	27970021	27970930	+	0	NA	promoter-TSS (NM_198964)	promoter-TSS (NM_198964)	-499	NM_198966	5744		NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
150838	chr21	44029871	44030030	+	0	NA	intron (NM_003274, intron 1 of 22)	intron (NM_003274, intron 1 of 22)	17641	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
93476	chr17	18859401	18859880	+	0	NA	intron (NM_001353100, intron 2 of 11)	intron (NM_001353100, intron 2 of 11)	300	NM_001353096	5636		NM_002767	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase associated protein 2	protein-coding
201386	chr6	145634001	145634280	+	0	NA	TTS (NM_001368130)	TTS (NM_001368130)	52737	NM_001368132	7957		NM_005670	ENSG00000112425	EPM2A	EPM2|MELF|MELF2	EPM2A glucan phosphatase, laforin	protein-coding
145950	chr20	46092321	46092750	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2573	NM_020967	57727		NM_020967	ENSG00000124160	NCOA5	CIA|bA465L10.6	nuclear receptor coactivator 5	protein-coding
66342	chr14	61442471	61443180	+	0	NA	intron (NM_006255, intron 2 of 13)	AluJo|SINE|Alu	121382	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
152768	chr22	21774701	21775300	+	0	NA	intron (NM_138957, intron 6 of 7)	intron (NM_138957, intron 6 of 7)	-39206	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
104785	chr17	81719071	81719430	+	0	NA	intron (NM_012140, intron 9 of 10)	AluSz6|SINE|Alu	6966	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
155601	chr22	38792221	38792480	+	0	NA	intron (NM_005740, intron 1 of 3)	AluSq2|SINE|Alu	1793	NM_005740	10126		NM_005740	ENSG00000100246	DNAL4	MRMV3|PIG27	dynein axonemal light chain 4	protein-coding
142498	chr20	4725651	4725750	+	0	NA	3' UTR (NM_012409, exon 2 of 2)	3' UTR (NM_012409, exon 2 of 2)	3791	NM_012409	23627		NM_012409	ENSG00000171864	PRND	DOPPEL|DPL|PrPLP|dJ1068H6.4	prion like protein doppel	protein-coding
199070	chr6	111644551	111644850	+	0	NA	Intergenic	Intergenic	-38426	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
29981	chr10	73741371	73741730	+	0	NA	Intergenic	AluSx|SINE|Alu	-2822	NM_004922	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
70618	chr14	102803921	102804480	+	0	NA	intron (NM_001199427, intron 1 of 7)	AluJb|SINE|Alu	26721	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
218887	chr8	60619701	60620030	+	0	NA	intron (NM_002865, intron 7 of 7)	intron (NM_002865, intron 7 of 7)	-58875	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
99796	chr17	51262601	51262800	+	0	NA	intron (NM_016001, intron 1 of 13)	AluJb|SINE|Alu	2154	NM_016001	51096		NM_016001	ENSG00000011260	UTP18	CGI-48|WDR50	UTP18 small subunit processome component	protein-coding
110561	chr19	2114271	2114900	+	0	NA	intron (NM_001374799, intron 21 of 31)	intron (NM_001374799, intron 21 of 31)	17670	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
91873	chr17	7248871	7249300	+	0	NA	intron (NM_015343, intron 2 of 8)	intron (NM_015343, intron 2 of 8)	2649	NM_001143775	23399		NM_015343	ENSG00000175826	CTDNEP1	DULLARD|HSA011916|NET56	CTD nuclear envelope phosphatase 1	protein-coding
76157	chr15	72722101	72722400	+	0	NA	intron (NM_033028, intron 6 of 15)	intron (NM_033028, intron 6 of 15)	36043	NM_033028	585		NM_033028	ENSG00000140463	BBS4	-	Bardet-Biedl syndrome 4	protein-coding
200060	chr6	130020801	130021430	+	0	NA	intron (NM_001346550, intron 1 of 21)	CpG	1471	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
217080	chr8	23714471	23715200	+	0	NA	Intergenic	Intergenic	-8079	NM_001136271	137814		NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
107581	chr18	48842251	48843430	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	99967	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
189307	chr5	172137851	172138150	+	0	NA	intron (NM_005990, intron 2 of 18)	L1MB1|LINE|L1	50224	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
218506	chr8	52793251	52793600	+	0	NA	Intergenic	Intergenic	-78959	NM_001083617	9821		NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
210252	chr7	99392421	99394000	+	0	NA	intron (NM_005720, intron 8 of 9)	CpG-26176	15387	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
34730	chr10	133672051	133672230	+	0	NA	Intergenic	CpG	-45345	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
69881	chr14	99322471	99322630	+	0	NA	Intergenic	Intergenic	-50353	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
182568	chr5	65939971	65940380	+	0	NA	intron (NM_001253697, intron 1 of 25)	SVA_D|Retroposon|SVA	5398	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
1693	chr1	4655501	4655700	+	0	NA	intron (NM_018836, intron 1 of 5)	CpG	991	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
75088	chr15	64391851	64392150	+	0	NA	intron (NM_001321924, intron 1 of 12)	AluSz|SINE|Alu	4164	NM_016213	9325		NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5	thyroid hormone receptor interactor 4	protein-coding
121441	chr19	47034071	47034230	+	0	NA	intron (NM_002517, intron 5 of 11)	AluSp|SINE|Alu	-1167	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
204111	chr7	2241651	2243350	+	0	NA	promoter-TSS (NM_013393)	promoter-TSS (NM_013393)	239	NM_198950	4521		NM_002452	ENSG00000106268	NUDT1	MTH1	nudix hydrolase 1	protein-coding
109797	chr19	1153451	1153550	+	0	NA	intron (NM_014963, intron 2 of 31)	AluSx1|SINE|Alu	20768	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
117337	chr19	19527821	19528380	+	0	NA	promoter-TSS (NM_001190328)	promoter-TSS (NM_001190328)	-811	NM_001190328	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
6281	chr1	27600921	27601180	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	2444	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
49571	chr12	26943271	26943430	+	0	NA	intron (NM_001171888, intron 1 of 4)	L1MD|LINE|L1	4880	NM_015633	26127		NM_015633	ENSG00000111790	FGFR1OP2	HSPC123-like|WIT3.0	FGFR1 oncogene partner 2	protein-coding
177473	chr4	113762101	113763150	+	0	NA	promoter-TSS (NM_001321569)	promoter-TSS (NM_001321569)	-698	NM_172114	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
81916	chr16	11739221	11739700	+	0	NA	intron (NR_136674, intron 1 of 8)	FAM|SINE|Alu	3397	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
69188	chr14	92659651	92660180	+	0	NA	intron (NM_024832, intron 7 of 9)	MLT1C|LTR|ERVL-MaLR	83681	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
190182	chr5	178195951	178196450	+	0	NA	Intergenic	Intergenic	-8333	NM_004499	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
112716	chr19	7194371	7194800	+	0	NA	intron (NM_001079817, intron 2 of 20)	AluSx3|SINE|Alu	99829	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
127057	chr2	37323351	37324100	+	0	NA	intron (NM_005813, intron 1 of 18)	intron (NM_005813, intron 1 of 18)	1108	NM_005813	23683		NM_005813	ENSG00000115825	PRKD3	EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU	protein kinase D3	protein-coding
152796	chr22	21833771	21833930	+	0	NA	intron (NM_138957, intron 1 of 7)	(ATAATT)n|Simple_repeat|Simple_repeat	33795	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
25380	chr10	6486671	6487230	+	0	NA	intron (NM_001282644, intron 8 of 17)	intron (NM_001282644, intron 8 of 17)	93326	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
32012	chr10	100995271	100995880	+	0	NA	Intergenic	Intergenic	-1496	NM_032429	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
164554	chr3	63976801	63977480	+	0	NA	intron (NM_001128149, intron 1 of 8)	Tigger9b|DNA|TcMar-Tigger	9346	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
142466	chr20	4108571	4108940	+	0	NA	Intergenic	Intergenic	-40024	NM_001270691	54498		NM_019025	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
106138	chr18	9474851	9476730	+	0	NA	intron (NM_006788, intron 1 of 9)	CpG	277	NM_006788	10928		NM_006788	ENSG00000017797	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
98140	chr17	46019171	46019330	+	0	NA	intron (NR_165166, intron 9 of 9)	THE1B|LTR|ERVL-MaLR	20000	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
89274	chr16	88681701	88683430	+	0	NA	intron (NM_178310, intron 1 of 2)	intron (NM_178310, intron 1 of 2)	3942	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
176024	chr4	82350371	82350600	+	0	NA	Intergenic	AluSx|SINE|Alu	23506	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
169374	chr3	160438221	160438880	+	0	NA	non-coding (NR_148401, exon 3 of 19)	non-coding (NR_148401, exon 3 of 19)	11236	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
19229	chr1	172588801	172589280	+	0	NA	exon (NM_014283, exon 18 of 24)	exon (NM_014283, exon 18 of 24)	55890	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
178748	chr4	153151671	153152280	+	0	NA	promoter-TSS (NM_001375514)	promoter-TSS (NM_001375514)	-188	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
6612	chr1	28879921	28880180	+	0	NA	Intergenic	Charlie15a|DNA|hAT-Charlie	-7041	NM_203342	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
213420	chr7	137999821	138000450	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	1951	NM_194071	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
108286	chr18	63311501	63312100	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	7969	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
173667	chr4	14872171	14872450	+	0	NA	intron (NR_126435, intron 1 of 6)	intron (NR_126435, intron 1 of 6)	15859	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
136407	chr2	176152451	176152750	+	0	NA	intron (NM_014621, intron 1 of 1)	CpG	1050	NM_014621	3233		NM_014621	ENSG00000170166	HOXD4	HHO.C13|HOX-5.1|HOX4|HOX4B|Hox-4.2	homeobox D4	protein-coding
217201	chr8	26330871	26331430	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	37934	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
206409	chr7	32387301	32387500	+	0	NA	intron (NM_001322059, intron 1 of 17)	SVA_E|Retroposon|SVA	40824	NM_001322059	5137		NM_005020	ENSG00000154678	PDE1C	DFNA74|Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding
227254	chr9	89357621	89358680	+	0	NA	exon (NM_001354697, exon 16 of 17)	exon (NM_001354697, exon 16 of 17)	39299	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
86593	chr16	67260701	67261280	+	0	NA	intron (NM_001323971, intron 12 of 12)	L3|LINE|CR1	12011	NM_004594	6553		NM_004594	ENSG00000135740	SLC9A5	NHE5	solute carrier family 9 member A5	protein-coding
63395	chr13	114069321	114069650	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	8470	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171856	chr4	730221	730680	+	0	NA	intron (NM_001317836, intron 1 of 11)	intron (NM_001317836, intron 1 of 11)	24618	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
69723	chr14	98223501	98224350	+	0	NA	Intergenic	Intergenic	-245801	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
140797	chr2	236050051	236050230	+	0	NA	intron (NM_001037131, intron 16 of 17)	intron (NM_001037131, intron 16 of 17)	118246	NM_001301687	2637		NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
150467	chr21	42534251	42534950	+	0	NA	intron (NM_018964, intron 4 of 20)	intron (NM_018964, intron 4 of 20)	20748	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
80409	chr16	2603251	2604450	+	0	NA	TTS (NM_001261816)	TTS (NM_001261816)	466	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
155739	chr22	39150771	39151080	+	0	NA	intron (NM_001346743, intron 1 of 5)	L2a|LINE|L2	1755	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
229402	chr9	121194001	121194330	+	0	NA	intron (NM_016322, intron 1 of 7)	FLAM_C|SINE|Alu	-7318	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
84718	chr16	30893371	30895290	+	0	NA	promoter-TSS (NM_001286526)	promoter-TSS (NM_001286526)	-253	NM_001286526	9274		NM_004765	ENSG00000099385	BCL7C	SMARCJ3	BAF chromatin remodeling complex subunit BCL7C	protein-coding
122159	chr19	48889021	48889830	+	0	NA	intron (NM_003323, intron 7 of 12)	intron (NM_003323, intron 7 of 12)	9319	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
193360	chr6	30321621	30321950	+	0	NA	intron (NR_024052, intron 1 of 4)	MER44C|DNA|TcMar-Tigger	4349	NR_052012	414778		NR_052012	ENSG00000270604	HCG17	HCG18|LINC00046|NCRNA00046	HLA complex group 17	ncRNA
101216	chr17	65565471	65565630	+	0	NA	Intergenic	MIRb|SINE|MIR	-3902	NM_004655	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
63360	chr13	114039771	114039930	+	0	NA	intron (NM_001320822, intron 4 of 23).2	intron (NM_001320822, intron 4 of 23).2	38105	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
67646	chr14	73069371	73070000	+	0	NA	intron (NM_021239, intron 1 of 18)	AluSp|SINE|Alu	11151	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
231763	chr9	132235071	132235230	+	0	NA	intron (NM_032536, intron 5 of 7)	intron (NM_032536, intron 5 of 7)	73092	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
236296	chrX	68183871	68184030	+	0	NA	intron (NM_002547, intron 15 of 24)	intron (NM_002547, intron 15 of 24)	249545	NM_002547	4983		NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|MRXSBL|OPN1	oligophrenin 1	protein-coding
15475	chr1	150360501	150361630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3046	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
148290	chr20	63705951	63706050	+	0	NA	intron (NM_003224, intron 4 of 7)	LTR42|LTR|ERVL	-1442	NM_001083113	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
108764	chr18	77129321	77129580	+	0	NA	intron (NM_001025100, intron 1 of 3)	MLT2C2|LTR|ERVL	3333	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
89754	chr16	89448951	89449250	+	0	NA	intron (NR_110931, intron 2 of 2)	AluJb|SINE|Alu	18182	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109542	chr19	869921	870430	+	0	NA	intron (NM_005481, intron 13 of 15)	intron (NM_005481, intron 13 of 15)	10511	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
225771	chr9	37414401	37414600	+	0	NA	Intergenic	Intergenic	-8196	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
42930	chr11	73401951	73402150	+	0	NA	3' UTR (NM_001286051, exon 6 of 6)	3' UTR (NM_001286051, exon 6 of 6)	25382	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
67428	chr14	70600351	70601500	+	0	NA	promoter-TSS (NM_001284211)	promoter-TSS (NM_001284211)	-235	NM_001284209	10001		NM_005466	ENSG00000133997	MED6	ARC33|NY-REN-28	mediator complex subunit 6	protein-coding
15323	chr1	149886301	149887300	+	0	NA	promoter-TSS (NM_003528)	promoter-TSS (NM_003528)	-118	NM_003528	8349		NM_003528	ENSG00000184678	H2BC21	GL105|H2B|H2B-GL105|H2B.1|H2BE|H2BFQ|H2BGL105|H2BQ|HIST2H2BE	H2B clustered histone 21	protein-coding
18306	chr1	161165301	161167700	+	0	NA	promoter-TSS (NM_001122764)	promoter-TSS (NM_001122764)	74	NM_001350129	5498		NM_000309	ENSG00000143224	PPOX	PPO|V290M|VP|VPCO	protoporphyrinogen oxidase	protein-coding
83949	chr16	29142151	29142450	+	0	NA	Intergenic	MIRb|SINE|MIR	67458	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
111281	chr19	3555821	3556150	+	0	NA	intron (NM_001287529, intron 1 of 9)	intron (NM_001287529, intron 1 of 9)	1599	NM_001287529	126321		NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501|SLC59B1	major facilitator superfamily domain containing 12	protein-coding
232611	chr9	136436251	136436930	+	0	NA	intron (NM_001318502, intron 1 of 9)	intron (NM_001318502, intron 1 of 9)	3255	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
48705	chr12	10616151	10616250	+	0	NA	Intergenic	Intergenic	-2591	NM_018048	55110		NM_018048	ENSG00000111196	MAGOHB	MGN2|mago|magoh	mago homolog B, exon junction complex subunit	protein-coding
159103	chr3	12565701	12565900	+	0	NA	intron (NM_001271707, intron 1 of 6)	AluJb|SINE|Alu	-4801	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
189665	chr5	176367401	176367980	+	0	NA	promoter-TSS (NR_031569)	promoter-TSS (NR_031569)	-256	NR_031569	100302203		NR_031569	ENSG00000221464	MIR1271	MIRN1271|hsa-mir-1271	microRNA 1271	ncRNA
95663	chr17	38259071	38259830	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-2201	NR_036750	440434		NR_036750	ENSG00000291088	NPEPPSP1	NPEPPSL1	NPEPPS pseudogene 1	pseudo
118211	chr19	35152521	35152780	+	0	NA	intron (NM_022006, intron 5 of 5)	GA-rich|Low_complexity|Low_complexity	-2085	NM_001320912	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
158291	chr22	50362771	50363130	+	0	NA	intron (NM_001351641, intron 1 of 23)	intron (NM_001351641, intron 1 of 23)	19623	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
163408	chr3	50542001	50543080	+	0	NA	Intergenic	Intergenic	25207	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
57852	chr12	123270731	123272330	+	0	NA	promoter-TSS (NR_073008)	promoter-TSS (NR_073008)	326	NM_004642	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
126549	chr2	28610701	28610900	+	0	NA	intron (NM_153021, intron 43 of 57)	intron (NM_153021, intron 43 of 57)	44443	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
92984	chr17	17146501	17147000	+	0	NA	intron (NM_015134, intron 10 of 22)	intron (NM_015134, intron 10 of 22)	59583	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
111000	chr19	3041751	3042530	+	0	NA	intron (NM_001144761, intron 2 of 19)	intron (NM_001144761, intron 2 of 19)	5495	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
201501	chr6	149043551	149043650	+	0	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-10939	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
214186	chr7	146906001	146906200	+	0	NA	intron (NM_014141, intron 2 of 22)	L1PA2|LINE|L1	131829	NM_014141	26047		NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein 2	protein-coding
187768	chr5	145834921	145835830	+	0	NA	promoter-TSS (NM_182960)	promoter-TSS (NM_182960)	-33	NM_205846	153768		NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
56691	chr12	120039701	120040500	+	0	NA	intron (NR_147894, intron 3 of 8)	AluSx1|SINE|Alu	50256	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
88639	chr16	85634721	85634980	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	21528	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
130117	chr2	74551701	74552030	+	0	NA	intron (NM_001289164, intron 2 of 11)	L3|LINE|CR1	2077	NM_032603	84695		NM_032603	ENSG00000115318	LOXL3	LOXL|MYP28	lysyl oxidase like 3	protein-coding
114680	chr19	13097651	13098900	+	0	NA	TTS (NM_005583)	TTS (NM_005583)	4583	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
113353	chr19	8665521	8666380	+	0	NA	intron (NM_001378601, intron 1 of 2)	intron (NM_001378601, intron 1 of 2)	10373	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
6907	chr1	31620821	31621380	+	0	NA	intron (NM_001525, intron 5 of 8)	intron (NM_001525, intron 5 of 8)	3411	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
200119	chr6	130212421	130212930	+	0	NA	intron (NM_001258275, intron 6 of 13)	MIR1_Amn|SINE|MIR	3210	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
39872	chr11	62463201	62463400	+	0	NA	intron (NM_024060, intron 5 of 5)	intron (NM_024060, intron 5 of 5)	44267	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
123033	chr19	51142371	51142730	+	0	NA	promoter-TSS (NR_102350)	promoter-TSS (NR_102350)	91	NR_102350	27036		NM_014385	ENSG00000168995	SIGLEC7	AIRM-1|AIRM1|CD328|CDw328|D-siglec|QA79|SIGLEC-7|SIGLEC19P|SIGLECP2|p75|p75/AIRM1	sialic acid binding Ig like lectin 7	protein-coding
108663	chr18	76819501	76819800	+	0	NA	intron (NR_040024, intron 1 of 2)	AluJb|SINE|Alu	2645	NR_040024	100131655		NR_040024	ENSG00000264278	ZNF236-DT	-	ZNF236 divergent transcript	ncRNA
224907	chr9	32549121	32549480	+	0	NA	intron (NM_001195622, intron 1 of 1)	AluY|SINE|Alu	-1844	NM_001349118	100129250		NM_001349118	ENSG00000235453	SMIM27	C9orf133|TOPORS-AS1	small integral membrane protein 27	protein-coding
140542	chr2	233254451	233254750	+	0	NA	intron (NM_198890, intron 1 of 13).2	intron (NM_198890, intron 1 of 13).2	2927	NM_017974	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
189801	chr5	176837551	176837950	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	27191	NM_133369	90249		NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
82237	chr16	15047521	15047980	+	0	NA	intron (NM_001270767, intron 1 of 7)	intron (NM_001270767, intron 1 of 7)	8324	NM_173474	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
102781	chr17	76314921	76315380	+	0	NA	intron (NM_001366236, intron 7 of 9)	intron (NM_001366236, intron 7 of 9)	-7470	NM_032134	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
128782	chr2	62228871	62229030	+	0	NA	Intergenic	Intergenic	13429	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
231664	chr9	131668211	131669500	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-17452	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
157596	chr22	46008171	46008530	+	0	NA	non-coding (NR_027240, exon 1 of 1)	non-coding (NR_027240, exon 1 of 1)	1734	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
117516	chr19	20149751	20150130	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-17274	NM_052852	90649		NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
193736	chr6	31254701	31255100	+	0	NA	Intergenic	L1PA6|LINE|L1	17192	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
7517	chr1	33633071	33633750	+	0	NA	intron (NM_052896, intron 32 of 69)	CpG	160765	NM_001377376	7579		NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
80670	chr16	3021401	3022900	+	0	NA	TTS (NM_001002018)	TTS (NM_001002018)	1782	NM_016639	51330		NM_016639	ENSG00000006327	TNFRSF12A	CD266|FN14|TWEAKR	TNF receptor superfamily member 12A	protein-coding
114569	chr19	12901601	12901800	+	0	NA	intron (NM_001105578, intron 3 of 5)	AluSq2|SINE|Alu	10540	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
72693	chr15	38564501	38565730	+	0	NA	promoter-TSS (NM_001306086)	promoter-TSS (NM_001306086)	-301	NM_005739	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
215973	chr8	8789071	8789430	+	0	NA	intron (NM_004225, intron 2 of 2)	L2c|LINE|L2	87313	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
224657	chr9	20996921	20997380	+	0	NA	Intergenic	Intergenic	34490	NM_001321883	401494		NM_001010915	ENSG00000188921	HACD4	PTPLAD2	3-hydroxyacyl-CoA dehydratase 4	protein-coding
121712	chr19	47601651	47601750	+	0	NA	Intergenic	Intergenic	-6496	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
235921	chrX	53090871	53091230	+	0	NA	Intergenic	Intergenic	-3107	NR_145978	102723508		NM_001397448	ENSG00000232593	KANTR	LINC01155|Spasm	KANTR integral membrane protein	protein-coding
76359	chr15	74568501	74568900	+	0	NA	intron (NM_006465, intron 2 of 8)	intron (NM_006465, intron 2 of 8)	27480	NM_006465	10620		NM_006465	ENSG00000179361	ARID3B	BDP|DRIL2	AT-rich interaction domain 3B	protein-coding
117831	chr19	31054571	31054730	+	0	NA	Intergenic	LTR33C|LTR|ERVL	-112860	NR_147209	107985312		NR_147209	ENSG00000267777	LINC01791	-	long intergenic non-protein coding RNA 1791	ncRNA
40712	chr11	64794701	64795630	+	0	NA	intron (NM_004579, intron 24 of 31)	AluSx4|SINE|Alu	8049	NM_004579	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
145422	chr20	43456371	43456530	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-1446	NR_034009	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
68099	chr14	75298721	75299680	+	0	NA	Intergenic	Intergenic	4796	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
9424	chr1	48202121	48202380	+	0	NA	Intergenic	Intergenic	-19822	NR_026749	391037		NR_026749		SKINT1L	BTN12|SKINT1|SKINTL|SKINTP	Skint1 like (pseudogene)	pseudo
173305	chr4	7192251	7192830	+	0	NA	promoter-TSS (NM_020777)	promoter-TSS (NM_020777)	2	NM_020777	57537		NM_020777	ENSG00000184985	SORCS2	-	sortilin related VPS10 domain containing receptor 2	protein-coding
194256	chr6	32567951	32568050	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-7998	NR_001298	3128		NR_001298	ENSG00000290878	HLA-DRB6	-	major histocompatibility complex, class II, DR beta 6 (pseudogene)	pseudo
211311	chr7	103351801	103352000	+	0	NA	TTS (NM_001321787)	TTS (NM_001321787)	4257	NM_002803	5701		NM_002803	ENSG00000161057	PSMC2	MSS1|Nbla10058|RPT1|S7	proteasome 26S subunit, ATPase 2	protein-coding
165275	chr3	75611751	75612250	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-18763	NR_031714	100302212		NR_031714	ENSG00000283894	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
35800	chr11	2198851	2199380	+	0	NA	Intergenic	Intergenic	26052	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
202115	chr6	154769221	154769480	+	0	NA	intron (NM_001286189, intron 3 of 21)	intron (NM_001286189, intron 3 of 21)	35934	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
7815	chr1	36292251	36292750	+	0	NA	intron (NM_001321471, intron 7 of 12)	AluYm1|SINE|Alu	-13868	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
30246	chr10	75099601	75100700	+	0	NA	promoter-TSS (NM_001363514)	promoter-TSS (NM_001363514)	-660	NM_016364	51207		NM_016364	ENSG00000079393	DUSP13B	DUSP13|MDSP|SKRP4|TMDP	dual specificity phosphatase 13B	protein-coding
80521	chr16	2759551	2760780	+	0	NA	intron (NM_016333, intron 9 of 14)	intron (NM_016333, intron 9 of 14)	7527	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
208537	chr7	70669901	70670500	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-461944	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
123339	chr19	53841851	53842400	+	0	NA	Intergenic	Intergenic	-17722	NM_001277129	91662		NM_033297	ENSG00000142405	NLRP12	CLR19.3|FCAS2|NALP12|PAN6|PYPAF7|RNO|RNO2	NLR family pyrin domain containing 12	protein-coding
187796	chr5	146213401	146213600	+	0	NA	intron (NM_018989, intron 1 of 20)	intron (NM_018989, intron 1 of 20)	9895	NM_018989	54439		NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18|ZC3H20	RNA binding motif protein 27	protein-coding
97532	chr17	44012371	44012530	+	0	NA	intron (NM_032376, intron 3 of 3)	intron (NM_032376, intron 3 of 3)	2513	NM_032376	84336		NM_032376	ENSG00000091947	TMEM101	-	transmembrane protein 101	protein-coding
138539	chr2	207527471	207528150	+	0	NA	Intergenic	L2b|LINE|L2	-2152	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
146803	chr20	50958081	50959680	+	0	NA	promoter-TSS (NM_001317036)	promoter-TSS (NM_001317036)	62	NM_014484	27304		NM_014484	ENSG00000124217	MOCS3	UBA4	molybdenum cofactor synthesis 3	protein-coding
113059	chr19	8181851	8181950	+	0	NA	Intergenic	L1MC4|LINE|L1	-27470	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
63025	chr13	112872721	112873600	+	0	NA	intron (NM_032189, intron 26 of 28)	intron (NM_032189, intron 26 of 28)	95478	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
18937	chr1	168485201	168485900	+	0	NA	intron (NR_125956, intron 3 of 4)	L1PA8|LINE|L1	10094	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
226524	chr9	71900471	71901130	+	0	NA	intron (NM_016014, intron 1 of 4)	L2|LINE|L2	10393	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
107306	chr18	44838951	44839830	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	130776	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
778	chr1	1533201	1533600	+	0	NA	intron (NM_018188, intron 15 of 15)	intron (NM_018188, intron 15 of 15)	7224	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
35461	chr11	1464421	1464880	+	0	NA	Intergenic	Intergenic	16236	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
31469	chr10	96512371	96512850	+	0	NA	intron (NM_012465, intron 1 of 20)	CpG	1316	NM_012465	7093		NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding
12688	chr1	109478601	109479600	+	0	NA	intron (NM_001040709, intron 5 of 5)	intron (NM_001040709, intron 5 of 5)	-4805	NM_153340	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
87585	chr16	73055471	73056030	+	0	NA	intron (NM_001164766, intron 1 of 8)	intron (NM_001164766, intron 1 of 8)	3271	NM_001164766	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
157568	chr22	45966421	45966780	+	0	NA	intron (NM_058238, intron 1 of 3)	intron (NM_058238, intron 1 of 3)	10562	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
161936	chr3	46105351	46106050	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-19856	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
126988	chr2	36663971	36664480	+	0	NA	Intergenic	L2a|LINE|L2	-32465	NM_001177969	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
218381	chr8	43246851	43247230	+	0	NA	Intergenic	CpG	-45402	NM_001002920	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
216899	chr8	22686671	22687030	+	0	NA	TTS (NM_001199881)	TTS (NM_001199881)	5514	NM_001199880	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
41174	chr11	65621301	65622580	+	0	NA	intron (NM_032223, intron 10 of 34)	L2b|LINE|L2	5628	NM_032223	399909		NM_032223	ENSG00000197136	PCNX3	PCNXL3	pecanex 3	protein-coding
96298	chr17	39951171	39951680	+	0	NA	Intergenic	Intergenic	9951	NM_001195545	100505591		NM_001195545	ENSG00000204913	LRRC3C	-	leucine rich repeat containing 3C	protein-coding
133628	chr2	126754471	126754850	+	0	NA	Intergenic	Intergenic	98502	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
55436	chr12	104540571	104540930	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-50883	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
186100	chr5	134121151	134121250	+	0	NA	intron (NR_033449, intron 1 of 7)	intron (NR_033449, intron 1 of 7)	-2418	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
137015	chr2	190673951	190674550	+	0	NA	intron (NM_001321315, intron 3 of 5)	L2a|LINE|L2	15092	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
213952	chr7	142717321	142718980	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-31322	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
27536	chr10	32321851	32322150	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	25158	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
23734	chr1	232522201	232522400	+	0	NA	intron (NM_001377488, intron 2 of 21)	intron (NM_001377488, intron 2 of 21)	107833	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
13647	chr1	116513551	116513650	+	0	NA	TTS (NM_001779)	TTS (NM_001779)	-34774	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
68127	chr14	75518571	75519000	+	0	NA	Intergenic	MIR|SINE|MIR	-3684	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
229620	chr9	124015001	124015200	+	0	NA	intron (NM_004789, intron 2 of 4)	intron (NM_004789, intron 2 of 4)	3332	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
34121	chr10	127853971	127854300	+	0	NA	Intergenic	Intergenic	38806	NM_152311	119467		NM_152311	ENSG00000180745	CLRN3	TMEM12|USH3AL1	clarin 3	protein-coding
236268	chrX	66012121	66012400	+	0	NA	Intergenic	Intergenic	-6610	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
20341	chr1	197806651	197807400	+	0	NA	Intergenic	L1M3e|LINE|L1	-31545	NM_001195215	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
129126	chr2	65256201	65256400	+	0	NA	intron (NM_005722, intron 6 of 8)	intron (NM_005722, intron 6 of 8)	28469	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
95009	chr17	32383621	32384180	+	0	NA	Intergenic	AluSg|SINE|Alu	33743	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
192424	chr6	24879371	24880180	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-2410	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
91001	chr17	2775601	2775800	+	0	NA	Intergenic	L3|LINE|CR1	-1058	NM_001330058	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
59867	chr13	30623801	30624080	+	0	NA	intron (NM_001321533, intron 2 of 6)	MER21C|LTR|ERVL	6020	NM_005800	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
209088	chr7	74853051	74853150	+	0	NA	Intergenic	AluSx|SINE|Alu	-1524	NM_173537	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
26043	chr10	12445871	12446030	+	0	NA	intron (NM_001351032, intron 3 of 11)	intron (NM_001351032, intron 3 of 11)	56968	NM_001351032	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
73894	chr15	50676571	50676730	+	0	NA	intron (NR_149152, intron 1 of 38)	L1MEb|LINE|L1	10147	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
47797	chr12	6575151	6575250	+	0	NA	intron (NM_001273, intron 37 of 39)	AluSx|SINE|Alu	6409	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
198755	chr6	108581021	108582150	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	20668	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
213602	chr7	139393851	139394200	+	0	NA	intron (NM_016019, intron 2 of 9)	intron (NM_016019, intron 2 of 9)	33501	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
115372	chr19	15236621	15237330	+	0	NA	TTS (NM_058243)	TTS (NM_058243)	-3928	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
18455	chr1	161544801	161545630	+	0	NA	intron (NM_001127596, intron 4 of 5)	intron (NM_001127596, intron 4 of 5)	4603	NM_000569	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
69206	chr14	92684701	92686000	+	0	NA	intron (NM_024832, intron 9 of 9)	intron (NM_024832, intron 9 of 9)	63277	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
34828	chr11	298821	299480	+	0	NA	intron (NM_001025295, intron 1 of 1)	intron (NM_001025295, intron 1 of 1)	376	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
74770	chr15	63245001	63245900	+	0	NA	intron (NM_016530, intron 2 of 7)	MER21B|LTR|ERVL	-32100	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
193113	chr6	28946251	28947000	+	0	NA	Intergenic	L2a|LINE|L2	2841	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
40224	chr11	63551801	63552500	+	0	NA	TTS (NM_017878)	TTS (NM_017878)	11229	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
212364	chr7	127654521	127654880	+	0	NA	intron (NM_014390, intron 1 of 23)	intron (NM_014390, intron 1 of 23)	2506	NM_014390	27044		NM_014390	ENSG00000197157	SND1	TDRD11|TSN|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
6136	chr1	27367951	27368250	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1139	NM_004672	9064		NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
119522	chr19	40559601	40560200	+	0	NA	intron (NM_025213, intron 9 of 9)	intron (NM_025213, intron 9 of 9)	-16973	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
207803	chr7	50284151	50284830	+	0	NA	Intergenic	Intergenic	-19574	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
106894	chr18	24494551	24494850	+	0	NA	Intergenic	L1MC5a|LINE|L1	34063	NM_021624	59340		NM_021624	ENSG00000134489	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
86072	chr16	57607971	57608380	+	0	NA	Intergenic	Intergenic	-11563	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
116068	chr19	17232251	17233130	+	0	NA	intron (NM_005234, intron 3 of 3)	intron (NM_005234, intron 3 of 3)	6464	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
97435	chr17	43542821	43543600	+	0	NA	intron (NM_001322219, intron 23 of 23)	intron (NM_001322219, intron 23 of 23)	2689	NM_001986	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
70538	chr14	102508201	102508650	+	0	NA	intron (NM_001348651, intron 3 of 3)	CpG	1351	NM_152326	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
59207	chr13	23020271	23020450	+	0	NA	Intergenic	Intergenic	-103991	NR_138043	100996930		NR_138043		LINC00621	-	long intergenic non-protein coding RNA 621	ncRNA
197032	chr6	53340171	53340950	+	0	NA	intron (NM_001242830, intron 1 of 6)	Tigger3b|DNA|TcMar-Tigger	-2943	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
217215	chr8	26439071	26439430	+	0	NA	Intergenic	Intergenic	48837	NM_001330491	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
80903	chr16	3729921	3730750	+	0	NA	intron (NM_004380, intron 30 of 30)	intron (NM_004380, intron 30 of 30)	-12811	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
150929	chr21	44247151	44248100	+	0	NA	intron (NM_013369, intron 11 of 11)	intron (NM_013369, intron 11 of 11)	-3188	NR_135514	105372833		NR_135514	ENSG00000232010	DNMT3L-AS1	-	DNMT3L antisense RNA 1	ncRNA
110636	chr19	2227621	2227880	+	0	NA	intron (NM_032482, intron 27 of 27)	CpG	6399	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
69866	chr14	99273901	99274100	+	0	NA	Intergenic	CpG-7606	-1803	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
70769	chr14	103460121	103460650	+	0	NA	intron (NM_002376, intron 6 of 15)	intron (NM_002376, intron 6 of 15)	62445	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
203054	chr6	166206951	166207250	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-29869	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
123500	chr19	54205051	54205150	+	0	NA	intron (NM_001321706, intron 3 of 3).8	intron (NM_001321706, intron 3 of 3).8	4242	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
138300	chr2	203722751	203723450	+	0	NA	intron (NM_001243078, intron 1 of 2)	MER5B|DNA|hAT-Charlie	16461	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
210130	chr7	98209971	98210300	+	0	NA	TTS (NM_014916)	TTS (NM_014916)	-1304	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
87482	chr16	71777101	71777700	+	0	NA	intron (NM_001128, intron 2 of 22)	intron (NM_001128, intron 2 of 22)	-18913	NR_003059	692111		NR_003059	ENSG00000223224	SNORD71	HBII-239|MIRN768|hsa-mir-768	small nucleolar RNA, C/D box 71	snoRNA
55103	chr12	98501501	98501700	+	0	NA	intron (NR_038383, intron 2 of 3)	AluSz|SINE|Alu	2255	NR_038383	643770		NR_038383	ENSG00000245017	LINC02453	-	long intergenic non-protein coding RNA 2453	ncRNA
65955	chr14	56002621	56003780	+	0	NA	Intergenic	Intergenic	-115211	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
28875	chr10	62728521	62728830	+	0	NA	Intergenic	Intergenic	-76045	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
54780	chr12	94180401	94181200	+	0	NA	intron (NM_005761, intron 2 of 30)	intron (NM_005761, intron 2 of 30)	32223	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
74110	chr15	52805251	52806380	+	0	NA	Intergenic	CpG	-15479	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
58126	chr12	124896671	124896830	+	0	NA	Intergenic	Intergenic	17900	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
111533	chr19	4023571	4024600	+	0	NA	exon (NM_015897, exon 3 of 11)	exon (NM_015897, exon 3 of 11)	16349	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
10067	chr1	58754501	58755980	+	0	NA	Intergenic	Intergenic	28807	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
102369	chr17	75523871	75524230	+	0	NA	intron (NM_207346, intron 10 of 10)	intron (NM_207346, intron 10 of 10)	-1647	NM_001031803	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
32343	chr10	102268301	102268500	+	0	NA	intron (NR_165087, intron 3 of 38)	intron (NR_165087, intron 3 of 38)	22868	NR_165088	8729		NM_004193	ENSG00000107862	GBF1	ARF1GEF|CMT2GG|CMTDI2|CMTDIA	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
232367	chr9	135864501	135864780	+	0	NA	intron (NM_015447, intron 4 of 16)	intron (NM_015447, intron 4 of 16)	42906	NM_015447	157922		NM_015447	ENSG00000130559	CAMSAP1	CDCBM12	calmodulin regulated spectrin associated protein 1	protein-coding
65437	chr14	51283221	51283580	+	0	NA	Intergenic	Intergenic	43153	NM_030755	81542		NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
19500	chr1	175176471	175176830	+	0	NA	intron (NM_001319231, intron 2 of 4)	intron (NM_001319231, intron 2 of 4)	16126	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
124048	chr19	55578171	55578330	+	0	NA	exon (NM_152600, exon 2 of 2)	exon (NM_152600, exon 2 of 2)	2598	NM_152600	163033		NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding
35260	chr11	862051	862830	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	17994	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
233259	chr9	137279101	137279300	+	0	NA	exon (NM_017723, exon 2 of 2)	exon (NM_017723, exon 2 of 2)	1474	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
143075	chr20	21523301	21523500	+	0	NA	Intergenic	Intergenic	-9336	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
103257	chr17	77618051	77618550	+	0	NA	Intergenic	Intergenic	71359	NR_040050	100507351		NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
234739	chrX	21985221	21985680	+	0	NA	intron (NM_004595, intron 9 of 10)	intron (NM_004595, intron 9 of 10)	44741	NM_004595	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
145786	chr20	45375671	45375830	+	0	NA	3' UTR (NM_001099791, exon 4 of 4)	3' UTR (NM_001099791, exon 4 of 4)	2575	NM_014477	27296		NM_014477	ENSG00000124251	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
104737	chr17	81665301	81665900	+	0	NA	3' UTR (NM_001304999, exon 1 of 1)	3' UTR (NM_001304999, exon 1 of 1)	1005	NR_130936	339229		NM_001039842	ENSG00000204237	OXLD1	C17orf90	oxidoreductase like domain containing 1	protein-coding
190354	chr5	179701371	179701530	+	0	NA	intron (NM_001363993, intron 2 of 15)	AluSz|SINE|Alu	2483	NM_001746	821		NM_001746	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
18044	chr1	160617651	160618030	+	0	NA	intron (NR_104400, intron 3 of 4)	AluSx1|SINE|Alu	29204	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
239508	chrY	56767951	56768750	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-185905	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
181196	chr5	39150421	39150900	+	0	NA	intron (NM_199335, intron 3 of 17)	L2a|LINE|L2	68903	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
84003	chr16	29453721	29454600	+	0	NA	promoter-TSS (NR_037608)	promoter-TSS (NR_037608)	45	NR_135304	552900		NM_001031827	ENSG00000183336	BOLA2	BOLA2A|BOLA2B|My016	bolA family member 2	protein-coding
218835	chr8	59274921	59275180	+	0	NA	Intergenic	Intergenic	155840	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
75543	chr15	66706551	66706650	+	0	NA	intron (NM_005585, intron 1 of 3)	intron (NM_005585, intron 1 of 3)	4364	NR_027654	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
41714	chr11	66652021	66652300	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluY|SINE|Alu	13457	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
176879	chr4	102743471	102743630	+	0	NA	intron (NM_005908, intron 1 of 16)	HERVL-int|LTR|ERVL	17418	NM_005908	4126		NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
97957	chr17	45235701	45236480	+	0	NA	intron (NM_005892, intron 6 of 26)	intron (NM_005892, intron 6 of 26)	-11835	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
204105	chr7	2194921	2195180	+	0	NA	intron (NM_001304524, intron 8 of 16)	AluSx|SINE|Alu	37895	NM_003550	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
35295	chr11	981051	981150	+	0	NA	intron (NR_144509, intron 5 of 20)	intron (NR_144509, intron 5 of 20)	55230	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
173817	chr4	18021101	18022880	+	0	NA	promoter-TSS (NR_158563)	promoter-TSS (NR_158563)	-115	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
41675	chr11	66613971	66615050	+	0	NA	Intergenic	AluY|SINE|Alu	-2072	NM_001198845	100526737		NM_001198845	ENSG00000248643	RBM14-RBM4	COAZ|PSP2|RBM14|SIP	RBM14-RBM4 readthrough	protein-coding
128426	chr2	55408421	55408680	+	0	NA	intron (NM_018084, intron 2 of 31)	MER41A|LTR|ERV1	11306	NM_018084	55704		NM_018084	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL	coiled-coil domain containing 88A	protein-coding
136595	chr2	178414501	178415200	+	0	NA	intron (NR_110206, intron 1 of 2)	intron (NR_110206, intron 1 of 2)	1191	NR_110204	101927027		NR_110204	ENSG00000223960	CHROMR	CHROME|PRKRA-AS1	cholesterol induced regulator of metabolism RNA	ncRNA
14967	chr1	147950001	147950200	+	0	NA	intron (NM_016334, intron 5 of 13)	SVA_D|Retroposon|SVA	21680	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
18552	chr1	162564751	162566030	+	0	NA	intron (NM_001324115, intron 2 of 10)	intron (NM_001324115, intron 2 of 10)	3491	NM_001324114	6675		NM_003115	ENSG00000117143	UAP1	AGX|AGX1|AGX2|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
117385	chr19	19594321	19594750	+	0	NA	intron (NM_025245, intron 2 of 7)	Charlie13a|DNA|hAT-Charlie	24152	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
224582	chr9	20209501	20210500	+	0	NA	Intergenic	Intergenic	201238	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
99962	chr17	57459201	57459600	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	64197	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
100365	chr17	60037051	60037730	+	0	NA	Intergenic	L1MD2|LINE|L1	5715	NR_039890	100616210		NR_039890	ENSG00000264049	MIR4737	-	microRNA 4737	ncRNA
66013	chr14	58259221	58259680	+	0	NA	intron (NM_152132, intron 5 of 10)	AluSx1|SINE|Alu	14607	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
161832	chr3	45664101	45666050	+	0	NA	intron (NM_014240, intron 2 of 7)	intron (NM_014240, intron 2 of 7)	23807	NR_033947	644714		NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
76217	chr15	73922721	73922980	+	0	NA	intron (NR_040068, intron 1 of 2)	intron (NR_040068, intron 1 of 2)	-3612	NM_005576	4016		NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase like 1	protein-coding
60311	chr13	40650871	40651330	+	0	NA	intron (NM_002015, intron 1 of 2)	FLAM_A|SINE|Alu	15541	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
15572	chr1	150561801	150562580	+	0	NA	intron (NR_104133, intron 3 of 3)	intron (NR_104133, intron 3 of 3)	10261	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
93038	chr17	17302821	17303840	+	0	NA	promoter-TSS (NM_020201)	promoter-TSS (NM_020201)	-43	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
181168	chr5	39058971	39059530	+	0	NA	intron (NM_001285439, intron 2 of 38)	L1ME3|LINE|L1	15149	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
158403	chr22	50521521	50521930	+	0	NA	intron (NM_001185011, intron 11 of 19)	intron (NM_001185011, intron 11 of 19)	3873	NM_005138	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
196991	chr6	53292321	53292880	+	0	NA	intron (NM_001242830, intron 2 of 6)	AluSx|SINE|Alu	15607	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
36427	chr11	4493001	4493460	+	0	NA	3' UTR (NM_001005171, exon 2 of 2)	3' UTR (NM_001005171, exon 2 of 2)	10584	NM_001005171	390036		NM_001005171	ENSG00000196778	OR52K1	OR11-8	olfactory receptor family 52 subfamily K member 1	protein-coding
94374	chr17	28925271	28927200	+	0	NA	promoter-TSS (NR_110803)	promoter-TSS (NR_110803)	-40	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
8098	chr1	39103971	39104280	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	19958	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
102063	chr17	74917471	74917630	+	0	NA	3' UTR (NM_001282489, exon 3 of 3)	3' UTR (NM_001282489, exon 3 of 3)	5705	NM_173477	124590		NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	USH1 protein network component sans	protein-coding
231200	chr9	129939401	129939930	+	0	NA	intron (NM_001363755, intron 6 of 15)	L1MEd|LINE|L1	70060	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
155488	chr22	38505421	38507300	+	0	NA	promoter-TSS (NM_001098504)	promoter-TSS (NM_001098504)	-49	NM_001098504	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
175993	chr4	81724071	81724480	+	0	NA	Intergenic	Intergenic	-252368	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
127112	chr2	37644751	37644850	+	0	NA	3' UTR (NM_001270438, exon 2 of 2)	3' UTR (NM_001270438, exon 2 of 2)	26842	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
84669	chr16	30756301	30757030	+	0	NA	TTS (NM_001014979)	TTS (NM_001014979)	-4947	NM_001207034	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
83819	chr16	28839221	28840330	+	0	NA	Intergenic	AluSx1|SINE|Alu	4232	NR_039872	100616256		NR_039872	ENSG00000283845	MIR4721	-	microRNA 4721	ncRNA
40172	chr11	62889651	62890350	+	0	NA	Intergenic	MER77B|LTR|ERVL	8301	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
115695	chr19	16201651	16202180	+	0	NA	intron (NM_001130524, intron 1 of 12)	L2b|LINE|L2	4004	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
155615	chr22	38860371	38860730	+	0	NA	TTS (NM_001303494)	TTS (NM_001303494)	11666	NM_001303494	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
218769	chr8	58971321	58971880	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	147547	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
7571	chr1	35168771	35168930	+	0	NA	Intergenic	L1MA8|LINE|L1	24295	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
5518	chr1	25794501	25794700	+	0	NA	Intergenic	L2b|LINE|L2	-5593	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
234865	chrX	25022821	25023100	+	0	NA	Intergenic	CpG	-6995	NM_139058	170302		NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
222917	chr8	142874771	142874930	+	0	NA	intron (NM_001026213, intron 7 of 7)	intron (NM_001026213, intron 7 of 7)	4970	NM_001026213	1584		NM_000497	ENSG00000160882	CYP11B1	CPN1|CYP11B|FHI|P450C11	cytochrome P450 family 11 subfamily B member 1	protein-coding
169823	chr3	177137701	177138230	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluJb|SINE|Alu	58513	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
231081	chr9	129736301	129736700	+	0	NA	Intergenic	Intergenic	16542	NM_004878	9536		NM_004878	ENSG00000148344	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
149365	chr21	29342501	29342700	+	0	NA	exon (NM_001186, exon 5 of 5)	exon (NM_001186, exon 5 of 5)	-29901	NR_046564	100874322		NR_046564		BACH1-IT2	-	BACH1 intronic transcript 2	ncRNA
29966	chr10	73627501	73627900	+	0	NA	Intergenic	Intergenic	-1719	NM_001378208	159195		NM_152586	ENSG00000166348	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
234601	chrX	19796101	19796550	+	0	NA	intron (NM_001353892, intron 2 of 17)	MIRb|SINE|MIR	3448	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
204564	chr7	5189671	5190980	+	0	NA	promoter-TSS (NM_001033518)	promoter-TSS (NM_001033518)	92	NM_001033519	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
237163	chrX	107628151	107629450	+	0	NA	intron (NM_001204402, intron 1 of 3)	intron (NM_001204402, intron 1 of 3)	290	NM_002764	5631		NM_002764	ENSG00000147224	PRPS1	ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI	phosphoribosyl pyrophosphate synthetase 1	protein-coding
183149	chr5	75051151	75051780	+	0	NA	intron (NM_001366737, intron 2 of 3)	intron (NM_001366737, intron 2 of 3)	1093	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
25855	chr10	11238801	11239000	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	73870	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
68975	chr14	91453871	91454400	+	0	NA	Intergenic	Intergenic	-36315	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
116096	chr19	17281051	17282100	+	0	NA	promoter-TSS (NR_103530)	promoter-TSS (NR_103530)	-326	NM_001278445	126549		NM_152363	ENSG00000160117	ANKLE1	ANKRD41|LEM3|LEMD6	ankyrin repeat and LEM domain containing 1	protein-coding
156016	chr22	39945371	39946080	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	-1092	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
105338	chr17	82613871	82614630	+	0	NA	TTS (NM_019613)	TTS (NM_019613)	34194	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
8408	chr1	40403671	40403980	+	0	NA	intron (NM_001198980, intron 1 of 9)	AluJr4|SINE|Alu	7025	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
211667	chr7	106278271	106278930	+	0	NA	intron (NM_005746, intron 1 of 10)	intron (NM_005746, intron 1 of 10)	6383	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
167282	chr3	128631251	128631550	+	0	NA	intron (NM_002950, intron 4 of 9)	AluSp|SINE|Alu	19418	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
213856	chr7	142299071	142299430	+	0	NA	Intergenic	Intergenic	-27001	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
195226	chr6	36169101	36169580	+	0	NA	Intergenic	HAL1M8|LINE|L1	-27404	NM_015695	27154		NM_015695	ENSG00000096070	BRPF3	-	bromodomain and PHD finger containing 3	protein-coding
152925	chr22	22789571	22789800	+	0	NA	Intergenic	Intergenic	-33091	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
144452	chr20	35523321	35523880	+	0	NA	intron (NR_026933, intron 5 of 10)	intron (NR_026933, intron 5 of 10)	6052	NR_026933	140873		NM_080828	ENSG00000125975	C20orf173	dJ477O4.4	chromosome 20 open reading frame 173	protein-coding
160050	chr3	18447371	18447830	+	0	NA	intron (NR_125803, intron 1 of 6)	intron (NR_125803, intron 1 of 6)	-2008	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
225627	chr9	36260571	36260930	+	0	NA	intron (NM_001128227, intron 1 of 11)	AluY|SINE|Alu	-2302	NM_001374797	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
41222	chr11	65708821	65709630	+	0	NA	Intergenic	AluSx4|SINE|Alu	-3027	NM_182710	10524		NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|NEDFASB|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
238011	chrX	134990951	134991330	+	0	NA	exon (NM_001163438, exon 1 of 1)	exon (NM_001163438, exon 1 of 1)	149	NM_001163438	644538		NM_001163438	ENSG00000184785	SMIM10	CXorf69	small integral membrane protein 10	protein-coding
171420	chr3	196221521	196221980	+	0	NA	intron (NM_152672, intron 2 of 8)	AluY|SINE|Alu	5216	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
234951	chrX	38811001	38811200	+	0	NA	Intergenic	Intergenic	-7217	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
183092	chr5	74576721	74577230	+	0	NA	Intergenic	Intergenic	-39999	NR_126354	104310351		NR_126354	ENSG00000248673	LINC01331	-	long intergenic non-protein coding RNA 1331	ncRNA
167913	chr3	136164901	136165430	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSx3|SINE|Alu	29303	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
110114	chr19	1565171	1565530	+	0	NA	intron (NM_203304, intron 1 of 1)	AluSz|SINE|Alu	2708	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
150194	chr21	39341871	39342030	+	0	NA	TTS (NM_004965)	TTS (NM_004965)	7138	NM_004965	3150		NM_004965	ENSG00000205581	HMGN1	HMG14	high mobility group nucleosome binding domain 1	protein-coding
94	chr1	381221	381650	+	0	NA	Intergenic	CpG	70243	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
121559	chr19	47259971	47260230	+	0	NA	intron (NM_015603, intron 3 of 11)	L2a|LINE|L2	3575	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
100957	chr17	64502871	64503200	+	0	NA	exon (NM_001320596, exon 9 of 14)	exon (NM_001320596, exon 9 of 14)	-1722	NR_039969	100616408		NR_039969	ENSG00000284368	MIR5047	-	microRNA 5047	ncRNA
230959	chr9	129439471	129439880	+	0	NA	Intergenic	Intergenic	-48985	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
137001	chr2	190627871	190628450	+	0	NA	Intergenic	Intergenic	-20735	NM_001321313	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
57647	chr12	122521721	122522380	+	0	NA	intron (NR_036436, intron 2 of 9)	AluSx|SINE|Alu	4886	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
181072	chr5	36722901	36723350	+	0	NA	Intergenic	Intergenic	116519	NM_004172	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
84871	chr16	31175301	31175500	+	0	NA	Intergenic	Intergenic	-4710	NM_001170634	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
160444	chr3	28347951	28349680	+	0	NA	promoter-TSS (NM_001271650)	promoter-TSS (NM_001271650)	9	NM_001271650	64343		NM_022461	ENSG00000163512	AZI2	AZ2|NAP1|TILP	5-azacytidine induced 2	protein-coding
81846	chr16	11596571	11596730	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-9184	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
26588	chr10	22060871	22061300	+	0	NA	Intergenic	L1PA5|LINE|L1	-57355	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
35486	chr11	1512571	1513200	+	0	NA	Intergenic	Intergenic	-26106	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
176846	chr4	102589651	102590180	+	0	NA	intron (NM_001382625, intron 12 of 24)	intron (NM_001382625, intron 12 of 24)	-87429	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
137334	chr2	196134251	196134750	+	0	NA	3' UTR (NM_004226, exon 8 of 8)	3' UTR (NM_004226, exon 8 of 8)	37078	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
6294	chr1	27615851	27616150	+	0	NA	intron (NM_001042747, intron 7 of 12)	intron (NM_001042747, intron 7 of 12)	10240	NM_001042747	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
230609	chr9	128621771	128622850	+	0	NA	intron (NM_001375310, intron 45 of 57)	AluSp|SINE|Alu	34540	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
165524	chr3	100462971	100463330	+	0	NA	Intergenic	Intergenic	-29469	NM_001363876	55076		NM_018004	ENSG00000181458	TMEM45A	DERP7|DNAPTP4	transmembrane protein 45A	protein-coding
100607	chr17	63476451	63477750	+	0	NA	promoter-TSS (NM_001382701)	promoter-TSS (NM_001382701)	39	NM_000789	1636		NM_000789	ENSG00000159640	ACE	ACE1|CD143|DCP|DCP1	angiotensin I converting enzyme	protein-coding
192262	chr6	20364471	20364630	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-37329	NM_001949	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
84178	chr16	29819201	29819500	+	0	NA	intron (NM_024516, intron 2 of 2)	L2b|LINE|L2	-1044	NM_017458	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
8934	chr1	44033471	44033830	+	0	NA	Intergenic	Intergenic	-2188	NM_001328630	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
26312	chr10	15089901	15090650	+	0	NA	Intergenic	Intergenic	-1499	NM_001039844	414149		NM_001039844	ENSG00000176244	ACBD7	bA455B2.2	acyl-CoA binding domain containing 7	protein-coding
88519	chr16	85333271	85333650	+	0	NA	Intergenic	Intergenic	-27135	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
131830	chr2	98654871	98655680	+	0	NA	intron (NM_001160154, intron 5 of 12)	intron (NM_001160154, intron 5 of 12)	8198	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
227960	chr9	94878871	94879230	+	0	NA	intron (NM_032823, intron 5 of 14)	LTR8|LTR|ERV1	66504	NR_147613	101928119		NR_147613		LOC101928119	-	uncharacterized LOC101928119	ncRNA
226275	chr9	68306401	68306680	+	0	NA	Intergenic	CpG	3673	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
211305	chr7	103325601	103326000	+	0	NA	intron (NM_001362668, intron 6 of 17)	intron (NM_001362668, intron 6 of 17)	18967	NM_014377	27000		NM_014377	ENSG00000105821	DNAJC2	MPHOSPH11|MPP11|ZRF1|ZUO1	DnaJ heat shock protein family (Hsp40) member C2	protein-coding
149957	chr21	36381271	36381430	+	0	NA	Intergenic	AluJo|SINE|Alu	-4042	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
90697	chr17	1751621	1752080	+	0	NA	intron (NM_001165920, intron 8 of 9).2	intron (NM_001165920, intron 8 of 9).2	8824	NM_001165920	5345		NM_000934	ENSG00000167711	SERPINF2	A2AP|AAP|ALPHA-2-PI|API|PLI|alpha2AP	serpin family F member 2	protein-coding
202101	chr6	154731601	154732180	+	0	NA	Intergenic	L2a|LINE|L2	-1488	NM_001286189	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
228102	chr9	96453501	96453880	+	0	NA	intron (NM_014282, intron 1 of 7)	intron (NM_014282, intron 1 of 7)	3521	NM_014282	22927		NM_014282	ENSG00000130956	HABP4	IHABP-4|IHABP4|Ki-1/57|SERBP1L	hyaluronan binding protein 4	protein-coding
55078	chr12	96828221	96828480	+	0	NA	intron (NM_001367885, intron 66 of 68)	intron (NM_001367885, intron 66 of 68)	-78907	NM_152905	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
130052	chr2	74440201	74440900	+	0	NA	promoter-TSS (NM_033046)	promoter-TSS (NM_033046)	33	NM_033046	6242		NM_033046	ENSG00000114993	RTKN	RTKN-1	rhotekin	protein-coding
31963	chr10	100734421	100734780	+	0	NA	promoter-TSS (NM_001304569)	promoter-TSS (NM_001304569)	-796	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
114706	chr19	13149151	13150800	+	0	NA	promoter-TSS (NM_004907)	promoter-TSS (NM_004907)	400	NM_003765	8677		NM_003765	ENSG00000104915	STX10	SYN10|hsyn10	syntaxin 10	protein-coding
137280	chr2	195497971	195498500	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-158723	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
64284	chr14	23468671	23470050	+	0	NA	promoter-TSS (NM_015514)	promoter-TSS (NM_015514)	-343	NM_015514	25983		NM_015514	ENSG00000129460	NGDN	C14orf120|CANu1|LCP5|NGD|lpd-2	neuroguidin	protein-coding
195077	chr6	35551971	35552550	+	0	NA	Intergenic	L1M4|LINE|L1	-39364	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
38795	chr11	47265051	47265680	+	0	NA	intron (NM_001251934, intron 7 of 9)	intron (NM_001251934, intron 7 of 9)	-3823	NM_001376651	8567		NM_003682	ENSG00000110514	MADD	DEEAH|DENN|IG20|NEDDISH|RAB3GEP|RabGEF	MAP kinase activating death domain	protein-coding
147409	chr20	58853621	58853900	+	0	NA	exon (NM_001077490, exon 1 of 13)	exon (NM_001077490, exon 1 of 13)	779	NM_001077490	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
30578	chr10	80077901	80079700	+	0	NA	promoter-TSS (NR_072984)	promoter-TSS (NR_072984)	135	NM_025125	80195		NM_025125	ENSG00000133678	TMEM254	C10orf57|bA369J21.6	transmembrane protein 254	protein-coding
126451	chr2	28252301	28252980	+	0	NA	intron (NM_199193, intron 11 of 13)	intron (NM_199193, intron 11 of 13)	-45679	NR_120504	100505736		NR_120504		LOC100505736	-	uncharacterized LOC100505736	ncRNA
96316	chr17	39983801	39984300	+	0	NA	intron (NM_002809, intron 1 of 11)	AluY|SINE|Alu	3243	NM_002809	5709		NM_002809	ENSG00000108344	PSMD3	P58|RPN3|S3|TSTA2	proteasome 26S subunit, non-ATPase 3	protein-coding
116404	chr19	17969371	17969530	+	0	NA	intron (NM_002248, intron 2 of 10)	MIRb|SINE|MIR	18148	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
149607	chr21	33350051	33350150	+	0	NA	intron (NM_001384503, intron 8 of 10)	MER5A|DNA|hAT-Charlie	25130	NM_001384503	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
153229	chr22	23968351	23968650	+	0	NA	TTS (NM_001355).2	TTS (NM_001355).2	1612	NM_001084393	100037417		NM_001084393	ENSG00000099974	DDTL	DDT|KB-226F1.2	D-dopachrome tautomerase like	protein-coding
2952	chr1	11908701	11909200	+	0	NA	TTS (NR_002754)	TTS (NR_002754)	796	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
169241	chr3	157147471	157147630	+	0	NA	TTS (NM_020307)	TTS (NM_020307)	12597	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
43985	chr11	94135171	94135330	+	0	NA	intron (NM_015368, intron 1 of 4)	intron (NM_015368, intron 1 of 4)	6409	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
217493	chr8	29049671	29050850	+	0	NA	non-coding (NR_136758, exon 10 of 11)	non-coding (NR_136758, exon 10 of 11)	158946	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
38760	chr11	47158671	47159030	+	0	NA	intron (NM_001003676, intron 7 of 7)	intron (NM_001003676, intron 7 of 7)	18029	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
7821	chr1	36298901	36299300	+	0	NA	intron (NM_001321471, intron 10 of 12)	intron (NM_001321471, intron 10 of 12)	-7268	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
116172	chr19	17409051	17409650	+	0	NA	intron (NR_130765, intron 3 of 4)	AluSx1|SINE|Alu	3609	NM_001304547	93343		NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
201515	chr6	149082301	149082950	+	0	NA	Intergenic	Intergenic	-49964	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
105790	chr18	2891601	2892200	+	0	NA	exon (NM_032048, exon 4 of 8)	exon (NM_032048, exon 4 of 8)	44894	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
145264	chr20	40690001	40690380	+	0	NA	promoter-TSS (NM_005461)	promoter-TSS (NM_005461)	-954	NM_005461	9935		NM_005461	ENSG00000204103	MAFB	DURS3|KRML|MCTO	MAF bZIP transcription factor B	protein-coding
227648	chr9	92960371	92961200	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	-3176	NM_001286993	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
89122	chr16	88502351	88502650	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	28553	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
232861	chr9	136799021	136800600	+	0	NA	intron (NM_001039374, intron 3 of 13)	CpG-29156	3472	NM_001039374	84960		NM_032874	ENSG00000213213	CCDC183	KIAA1984|PARF|bA216L13.7	coiled-coil domain containing 183	protein-coding
168302	chr3	141542071	141542830	+	0	NA	intron (NM_006506, intron 5 of 23)	MIRb|SINE|MIR	55423	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
46741	chr11	129022221	129022480	+	0	NA	intron (NM_001378025, intron 10 of 21)	intron (NM_001378025, intron 10 of 21)	1838	NM_014715	9743		NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
3842	chr1	16913471	16915080	+	0	NA	Intergenic	CpG	-7656	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
189815	chr5	176987771	176987930	+	0	NA	intron (NR_146149, intron 1 of 15)	intron (NR_146149, intron 1 of 15)	18592	NM_016290	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
27616	chr10	32929251	32930150	+	0	NA	intron (NM_133376, intron 4 of 15)	intron (NM_133376, intron 4 of 15)	5858	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
58058	chr12	124501001	124501400	+	0	NA	intron (NM_001077261, intron 2 of 47)	intron (NM_001077261, intron 2 of 47)	66412	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
37707	chr11	30282951	30283050	+	0	NA	Intergenic	L1PA16|LINE|L1	-40104	NM_152316	120534		NM_152316	ENSG00000152219	ARL14EP	ARF7EP|C11orf46|dJ299F11.1	ADP ribosylation factor like GTPase 14 effector protein	protein-coding
185300	chr5	126656321	126656780	+	0	NA	Intergenic	Intergenic	24845	NM_207408	389320		NM_207408	ENSG00000196900	SPMIP10	C5orf48|TEX43|Tseg7	sperm microtubule inner protein 10	protein-coding
107233	chr18	36850671	36850830	+	0	NA	intron (NM_020776, intron 4 of 9)	MER44B|DNA|TcMar-Tigger	-21534	NM_001271956	25941		NM_015476	ENSG00000134779	TPGS2	C18orf10|HMFN0601|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
153047	chr22	23275371	23275730	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	12783	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
208585	chr7	72914851	72915530	+	0	NA	intron (NM_001257190, intron 4 of 15)	intron (NM_001257190, intron 4 of 15)	24563	NM_172020	9883		NM_014833	ENSG00000196313	POM121	P145|POM121A	POM121 transmembrane nucleoporin	protein-coding
183176	chr5	75461771	75461930	+	0	NA	intron (NM_001130105, intron 3 of 18)	intron (NM_001130105, intron 3 of 18)	49779	NM_005713	10087		NM_005713	ENSG00000113163	CERT1	CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11	ceramide transporter 1	protein-coding
228474	chr9	99901371	99901530	+	0	NA	intron (NR_038853, intron 1 of 2)	THE1A-int|LTR|ERVL-MaLR	5151	NR_038853	441461		NR_038853		STX17-DT	STX17-AS1	STX17 divergent transcript	ncRNA
166771	chr3	122414021	122414350	+	0	NA	3' UTR (NM_019069, exon 1 of 1)	3' UTR (NM_019069, exon 1 of 1)	1877	NM_019069	54554		NM_019069	ENSG00000196981	WDR5B	-	WD repeat domain 5B	protein-coding
33729	chr10	122301121	122301400	+	0	NA	intron (NM_144587, intron 9 of 15)	intron (NM_144587, intron 9 of 15)	29964	NM_001318189	118663		NM_144587	ENSG00000138152	BTBD16	C10orf87	BTB domain containing 16	protein-coding
23575	chr1	229506651	229506950	+	0	NA	intron (NM_018230, intron 1 of 25)	AluJo|SINE|Alu	1541	NM_018230	55746		NM_018230	ENSG00000069248	NUP133	GAMOS8|NPHS18|hNUP133	nucleoporin 133	protein-coding
105461	chr17	83050151	83050250	+	0	NA	intron (NR_135465, intron 1 of 13)	AluSp|SINE|Alu	1570	NR_135465	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
173311	chr4	7325971	7326330	+	0	NA	intron (NM_020777, intron 1 of 26)	intron (NM_020777, intron 1 of 26)	15700	NR_039961	100616471		NR_039961	ENSG00000264658	MIR4798	-	microRNA 4798	ncRNA
141095	chr2	238397751	238397850	+	0	NA	intron (NM_001139490, intron 14 of 14)	intron (NM_001139490, intron 14 of 14)	-29127	NM_001040445	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
230731	chr9	128823821	128824580	+	0	NA	intron (NM_016390, intron 9 of 11)	intron (NM_016390, intron 9 of 11)	5594	NM_016390	51490		NM_016390	ENSG00000198917	SPOUT1	C9orf114|CENP-32|CENP32|HSPC109	SPOUT domain containing methyltransferase 1	protein-coding
238884	chrX	154550771	154551350	+	0	NA	intron (NM_003639, intron 1 of 9)	AluY|SINE|Alu	3213	NM_003639	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
49956	chr12	40152801	40153150	+	0	NA	Intergenic	Intergenic	-3264	NR_146526	105369734		NR_146526		LINC02471	-	long intergenic non-protein coding RNA 2471	ncRNA
178253	chr4	143530721	143530980	+	0	NA	intron (NM_003601, intron 9 of 23)	AluSz|SINE|Alu	-16013	NR_104027	100128055		NR_104027	ENSG00000245112	SMARCA5-AS1	-	SMARCA5 antisense RNA 1	ncRNA
237310	chrX	117261151	117261250	+	0	NA	Intergenic	L1PA3|LINE|L1	-443340	NR_145523	100126447		NR_145523		LOC100126447	-	uncharacterized LOC100126447	ncRNA
232955	chr9	136949451	136951030	+	0	NA	Intergenic	CpG	-2033	NM_178536	286256		NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
47549	chr12	4287001	4288500	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-11566	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
154921	chr22	37205501	37205700	+	0	NA	3' UTR (NM_001278687, exon 2 of 2)	3' UTR (NM_001278687, exon 2 of 2)	5089	NM_001278687	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
203440	chr7	359701	360580	+	0	NA	Intergenic	Intergenic	-19285	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
101883	chr17	74327601	74328000	+	0	NA	intron (NM_153209, intron 1 of 19)	intron (NM_153209, intron 1 of 19)	1574	NM_153209	124602		NM_153209	ENSG00000196169	KIF19	KIF19A	kinesin family member 19	protein-coding
187925	chr5	148856671	148856830	+	0	NA	Intergenic	Intergenic	30139	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
174082	chr4	27049951	27050050	+	0	NA	Intergenic	LTR32|LTR|ERVL	-167479	NR_125921	101929199		NR_125921	ENSG00000249699	LINC02261	-	long intergenic non-protein coding RNA 2261	ncRNA
163681	chr3	52240351	52241900	+	0	NA	TTS (NR_135307)	TTS (NR_135307)	1887	NR_135307	101929054		NR_135307	ENSG00000243224	TWF2-DT	-	TWF2 divergent transcript	ncRNA
171602	chr3	197295801	197296300	+	0	NA	intron (NM_001204386, intron 3 of 24)	intron (NM_001204386, intron 3 of 24)	2085	NM_001366217	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
45865	chr11	119683971	119684330	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	45050	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
74451	chr15	59615071	59615230	+	0	NA	intron (NM_004751, intron 1 of 2)	LTR50|LTR|ERVL	3367	NM_004751	9245		NM_004751	ENSG00000140297	GCNT3	C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding
46978	chr12	11001	11750	+	0	NA	Intergenic	TAR1|Satellite|telo	20640	NR_130745	100288778		NR_130745	ENSG00000226210	WASH8P	-	WAS protein family homolog 8, pseudogene	pseudo
108813	chr18	78641851	78642150	+	0	NA	Intergenic	Intergenic	-338275	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
232605	chr9	136430421	136430730	+	0	NA	intron (NM_001318502, intron 8 of 9)	intron (NM_001318502, intron 8 of 9)	9270	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
229745	chr9	125142751	125143930	+	0	NA	intron (NM_173690, intron 1 of 18)	CpG	188	NM_173690	286205		NM_173690	ENSG00000173611	SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
97612	chr17	44136201	44136600	+	0	NA	Intergenic	AluY|SINE|Alu	-5530	NM_001171251	78995		NM_024032	ENSG00000125319	HROB	C17orf53|MCM8IP	homologous recombination factor with OB-fold	protein-coding
83443	chr16	27313521	27314800	+	0	NA	intron (NM_001257997, intron 1 of 9)	CpG	186	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
231814	chr9	132415171	132415930	+	0	NA	intron (NM_001282957, intron 1 of 5)	intron (NM_001282957, intron 1 of 5)	5339	NM_207417	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
144920	chr20	36973601	36974050	+	0	NA	Intergenic	AluY|SINE|Alu	-22117	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
118205	chr19	35144351	35144730	+	0	NA	intron (NM_022006, intron 1 of 5)	intron (NM_022006, intron 1 of 5)	1285	NM_022006	53822		NM_022006	ENSG00000221946	FXYD7	-	FXYD domain containing ion transport regulator 7	protein-coding
12332	chr1	101027551	101028180	+	0	NA	intron (NR_109849, intron 1 of 4)	L2c|LINE|L2	2019	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
13852	chr1	117659711	117660130	+	0	NA	Intergenic	Intergenic	53872	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
2284	chr1	8950701	8950900	+	0	NA	intron (NM_001215, intron 2 of 7)	AluJb|SINE|Alu	4932	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
171952	chr4	892751	892850	+	0	NA	intron (NM_001318134, intron 6 of 24)	intron (NM_001318134, intron 6 of 24)	39516	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
45890	chr11	120212871	120213100	+	0	NA	intron (NM_178507, intron 1 of 3)	intron (NM_178507, intron 1 of 3)	1953	NM_178507	220323		NM_178507	ENSG00000184232	OAF	NS5ATP13TP2	out at first homolog	protein-coding
2197	chr1	8623701	8623900	+	0	NA	intron (NM_012102, intron 4 of 23)	intron (NM_012102, intron 4 of 23)	-128887	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
32384	chr10	102414801	102415450	+	0	NA	exon (NM_002779, exon 4 of 17)	exon (NM_002779, exon 4 of 17)	3660	NM_002779	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
219673	chr8	80510371	80510780	+	0	NA	intron (NM_023929, intron 2 of 6)	intron (NM_023929, intron 2 of 6)	24349	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
112931	chr19	7681401	7682930	+	0	NA	intron (NM_174894, intron 1 of 1)	CpG	1332	NM_001042462	126003		NM_174894	ENSG00000181029	TRAPPC5	TRS31	trafficking protein particle complex subunit 5	protein-coding
167105	chr3	127597851	127599150	+	0	NA	promoter-TSS (NM_001353007)	promoter-TSS (NM_001353007)	89	NR_073375	4171		NM_004526	ENSG00000073111	MCM2	BM28|CCNL1|CDCL1|D3S3194|DFNA70|MITOTIN|cdc19	minichromosome maintenance complex component 2	protein-coding
66196	chr14	61178201	61178400	+	0	NA	Intergenic	Intergenic	103038	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
18083	chr1	160675301	160676330	+	0	NA	Intergenic	Intergenic	-28504	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
147224	chr20	57397341	57399190	+	0	NA	intron (NM_001291780, intron 4 of 4)	(GT)n|Simple_repeat|Simple_repeat	-5209	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
195099	chr6	35599751	35600830	+	0	NA	intron (NM_001145775, intron 6 of 11)	AluJr|SINE|Alu	64499	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
180938	chr5	34917351	34917650	+	0	NA	intron (NM_018321, intron 1 of 9)	AluSg4|SINE|Alu	1789	NM_018321	55299		NM_018321	ENSG00000113460	BRIX1	BRIX|BXDC2	biogenesis of ribosomes BRX1	protein-coding
104312	chr17	80905901	80906500	+	0	NA	intron (NM_020761, intron 20 of 33)	intron (NM_020761, intron 20 of 33)	65013	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
75584	chr15	67087021	67087650	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	21733	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
218445	chr8	47958151	47958530	+	0	NA	intron (NM_006904, intron 1 of 85)	MLT1D|LTR|ERVL-MaLR	1796	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
185851	chr5	132488801	132489500	+	0	NA	non-coding (NR_149069, exon 2 of 2)	non-coding (NR_149069, exon 2 of 2)	1623	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
170604	chr3	186960451	186961030	+	0	NA	intron (NM_173216, intron 1 of 7)	intron (NM_173216, intron 1 of 7)	30214	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
211648	chr7	106257401	106258130	+	0	NA	intron (NM_005746, intron 8 of 10)	intron (NM_005746, intron 8 of 10)	27218	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
153404	chr22	24807421	24808250	+	0	NA	intron (NM_133454, intron 2 of 24)	intron (NM_133454, intron 2 of 24)	1614	NM_133454	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
103200	chr17	77468101	77468500	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	-7335	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
230812	chr9	129030971	129031350	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2807	NM_001287046	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
107421	chr18	46190851	46191150	+	0	NA	intron (NM_145055, intron 1 of 4)	MLT1K|LTR|ERVL-MaLR	16966	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
122634	chr19	49828351	49828680	+	0	NA	exon (NM_001378355, exon 4 of 18)	exon (NM_001378355, exon 4 of 18)	-3503	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
116229	chr19	17526751	17527530	+	0	NA	promoter-TSS (NM_001321828)	promoter-TSS (NM_001321828)	-127	NM_001321826	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
195142	chr6	35691021	35691900	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	-2518	NM_001145777	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
18276	chr1	161114851	161115830	+	0	NA	intron (NM_012394, intron 1 of 3)	AluSx1|SINE|Alu	2697	NM_012394	5202		NM_012394	ENSG00000143256	PFDN2	PFD2	prefoldin subunit 2	protein-coding
170954	chr3	194404471	194404980	+	0	NA	non-coding (NR_164667, exon 33 of 33)	non-coding (NR_164667, exon 33 of 33)	-5459	NM_004488	2814		NM_004488	ENSG00000178732	GP5	CD42d|GPV	glycoprotein V platelet	protein-coding
170703	chr3	187929401	187929700	+	0	NA	Intergenic	Intergenic	46857	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
123557	chr19	54416171	54416330	+	0	NA	intron (NM_020659, intron 1 of 13).4	intron (NM_020659, intron 1 of 13).4	786	NM_020659	57348		NM_020659	ENSG00000167614	TTYH1	-	tweety family member 1	protein-coding
138357	chr2	203937871	203939180	+	0	NA	intron (NM_012092, intron 1 of 4)	L2a|LINE|L2	1762	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
192036	chr6	16472951	16473580	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	234678	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
208359	chr7	66587821	66588380	+	0	NA	intron (NR_111973, intron 2 of 10)	AluSg|SINE|Alu	4307	NR_111978	493754		NR_002933	ENSG00000291136	RABGEF1P1	GS1-124K5.11	RABGEF1 pseudogene 1	pseudo
185965	chr5	133058971	133060030	+	0	NA	intron (NM_002154, intron 1 of 18)	AluJb|SINE|Alu	7487	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
24153	chr1	235857871	235858230	+	0	NA	intron (NM_001301365, intron 1 of 52)	L2a|LINE|L2	-4990	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
172180	chr4	1236001	1236330	+	0	NA	intron (NM_001377193, intron 3 of 9)	intron (NM_001377193, intron 3 of 9)	12563	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
41503	chr11	66252721	66253150	+	0	NA	Intergenic	L3|LINE|CR1	-4359	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
42535	chr11	71454671	71455200	+	0	NA	intron (NM_018161, intron 1 of 20)	intron (NM_018161, intron 1 of 20)	1732	NM_018161	55191		NM_018161	ENSG00000172890	NADSYN1	VCRL3	NAD synthetase 1	protein-coding
99108	chr17	49197351	49197450	+	0	NA	Intergenic	LTR8B|LTR|ERV1	11981	NM_031498	2793		NM_031498	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG9|GNGT8|HG3I	G protein subunit gamma transducin 2	protein-coding
219774	chr8	81111501	81112980	+	0	NA	promoter-TSS (NM_018440)	promoter-TSS (NM_018440)	-172	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
213669	chr7	139980701	139981250	+	0	NA	intron (NM_030984, intron 9 of 11)	intron (NM_030984, intron 9 of 11)	81976	NM_022750	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
120863	chr19	45530151	45530650	+	0	NA	intron (NM_001017989, intron 1 of 1)	intron (NM_001017989, intron 1 of 1)	22921	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
99460	chr17	50145871	50146470	+	0	NA	intron (NM_032595, intron 1 of 9)	intron (NM_032595, intron 1 of 9)	4507	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
164803	chr3	69451351	69451680	+	0	NA	Intergenic	MIR3|SINE|MIR	-65427	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
93775	chr17	20246551	20247050	+	0	NA	intron (NM_001033555, intron 6 of 12)	intron (NM_001033555, intron 6 of 12)	-74374	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
151076	chr21	44812801	44813250	+	0	NA	intron (NM_006936, intron 2 of 3)	intron (NM_006936, intron 2 of 3)	5037	NM_006936	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
181147	chr5	38551421	38551680	+	0	NA	intron (NM_002310, intron 1 of 19)	intron (NM_002310, intron 1 of 19)	5096	NM_001127671	3977		NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	LIF receptor subunit alpha	protein-coding
17854	chr1	159927071	159927600	+	0	NA	3' UTR (NM_020789, exon 21 of 21)	3' UTR (NM_020789, exon 21 of 21)	-1828	NM_003564	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
155153	chr22	37671751	37672980	+	0	NA	Intergenic	Intergenic	-3271	NM_002305	3956		NM_002305	ENSG00000100097	LGALS1	GAL1|GBP	galectin 1	protein-coding
93614	chr17	19152051	19152150	+	0	NA	intron (NM_001353418, intron 3 of 3)	AluSx|SINE|Alu	10524	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
94864	chr17	31514021	31514430	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	-20658	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
110755	chr19	2353921	2354180	+	0	NA	3' UTR (NM_001077238, exon 15 of 15)	3' UTR (NM_001077238, exon 15 of 15)	25366	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
122733	chr19	50048701	50049100	+	0	NA	TTS (NM_001006656)	TTS (NM_001006656)	-1689	NR_027257	400710		NR_027257	ENSG00000204666	ZNF473CR	-	ZNF473 cis regulating lncRNA	ncRNA
213580	chr7	139362601	139363480	+	0	NA	intron (NM_016019, intron 1 of 9)	intron (NM_016019, intron 1 of 9)	3146	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
43059	chr11	74397201	74397900	+	0	NA	intron (NM_173582, intron 1 of 13)	intron (NM_173582, intron 1 of 13)	883	NM_173582	283209		NM_173582	ENSG00000165434	PGM2L1	BM32A|NEDHFS|PMMLP	phosphoglucomutase 2 like 1	protein-coding
81427	chr16	8850351	8851200	+	0	NA	intron (NR_147908, intron 2 of 4)	intron (NR_147908, intron 2 of 4)	1306	NR_147908	100130283		NR_147908	ENSG00000140650	LOC100130283	-	uncharacterized LOC100130283	ncRNA
103081	chr17	77322801	77323000	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	3385	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
51067	chr12	49846851	49847350	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-3994	NM_181708	144233		NM_181708	ENSG00000186666	BCDIN3D	-	BCDIN3 domain containing RNA methyltransferase	protein-coding
99495	chr17	50192751	50193480	+	0	NA	intron (NM_000088, intron 25 of 50)	intron (NM_000088, intron 25 of 50)	8516	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
99801	chr17	51298721	51298980	+	0	NA	TTS (NM_016001)	TTS (NM_016001)	36312	NR_110751	101927274		NR_110751	ENSG00000249383	LINC02071	-	long intergenic non-protein coding RNA 2071	ncRNA
160007	chr3	18389021	18389480	+	0	NA	intron (NM_001322873, intron 7 of 10)	intron (NM_001322873, intron 7 of 10)	36089	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
136826	chr2	182715271	182716700	+	0	NA	promoter-TSS (NM_001271581)	promoter-TSS (NM_001271581)	-272	NR_073366	54431		NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
40636	chr11	64720151	64720250	+	0	NA	intron (NM_015080, intron 1 of 22)	intron (NM_015080, intron 1 of 22)	2997	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
234528	chrX	19627371	19627900	+	0	NA	intron (NM_001353892, intron 9 of 17)	intron (NM_001353892, intron 9 of 17)	43364	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
204282	chr7	2658001	2658400	+	0	NA	intron (NM_025250, intron 11 of 13)	MIRb|SINE|MIR	-21322	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
58235	chr12	128672221	128672480	+	0	NA	intron (NM_001136103, intron 5 of 8)	intron (NM_001136103, intron 5 of 8)	151608	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
216244	chr8	12209251	12209980	+	0	NA	Intergenic	Intergenic	-15482	NR_148876	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
1800	chr1	6184321	6184580	+	0	NA	TTS (NM_000983)	TTS (NM_000983)	-4129	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
131054	chr2	88454801	88455030	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-2222	NM_001135649	344167		NM_001135649	ENSG00000214336	FOXI3	CFM2	forkhead box I3	protein-coding
204913	chr7	6159071	6159230	+	0	NA	intron (NM_032172, intron 16 of 17)	intron (NM_032172, intron 16 of 17)	12987	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
208053	chr7	56062351	56062850	+	0	NA	intron (NM_001009186, intron 11 of 12)	intron (NM_001009186, intron 11 of 12)	-1686	NM_001366648	25870		NM_015411	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
190211	chr5	178225171	178225850	+	0	NA	intron (NM_153373, intron 3 of 12)	intron (NM_153373, intron 3 of 12)	7292	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
142144	chr20	2751251	2751350	+	0	NA	intron (NR_138537, intron 11 of 17)	intron (NR_138537, intron 11 of 17)	49327	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
225920	chr9	40348471	40348750	+	0	NA	non-coding (NR_121572, exon 1 of 4).2	non-coding (NR_121572, exon 1 of 4).2	111	NR_121572	100132541		NR_121572		GXYLT1P3	-	GXYLT1 pseudogene 3	pseudo
47287	chr12	1654451	1654750	+	0	NA	Intergenic	AluJr|SINE|Alu	5780	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
37219	chr11	14414671	14415700	+	0	NA	Intergenic	Intergenic	-50679	NM_001177314	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
197784	chr6	87676251	87676350	+	0	NA	intron (NM_018064, intron 3 of 4)	AluY|SINE|Alu	25933	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
54491	chr12	92065851	92065950	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	75813	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
211960	chr7	112495871	112496180	+	0	NA	Intergenic	Intergenic	15034	NM_182597	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
54805	chr12	94618951	94619280	+	0	NA	intron (NM_020698, intron 1 of 3)	intron (NM_020698, intron 1 of 3)	-3114	NM_001301036	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
73407	chr15	42915021	42915700	+	0	NA	intron (NM_173500, intron 1 of 14)	MER44B|DNA|TcMar-Tigger	5418	NM_173500	146057		NM_173500	ENSG00000128881	TTBK2	SCA11|TTBK	tau tubulin kinase 2	protein-coding
96123	chr17	39647301	39647500	+	0	NA	intron (NM_001165938, intron 1 of 13)	intron (NM_001165938, intron 1 of 13)	10256	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
112759	chr19	7398651	7398950	+	0	NA	intron (NM_015318, intron 1 of 20)	intron (NM_015318, intron 1 of 20)	3655	NM_015318	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
124067	chr19	55603001	55603200	+	0	NA	TTS (NM_153219)	TTS (NM_153219)	-2547	NM_001195605	100507290		NM_001195605	ENSG00000261221	ZNF865	-	zinc finger protein 865	protein-coding
134984	chr2	152682771	152682930	+	0	NA	intron (NM_001365600, intron 5 of 25)	MER1A|DNA|hAT-Charlie	34611	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
209125	chr7	75062751	75062850	+	0	NA	intron (NM_148842, intron 5 of 10)	intron (NM_148842, intron 5 of 10)	11002	NM_030798	81554		NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
162286	chr3	47386151	47386250	+	0	NA	intron (NM_001304482, intron 1 of 23)	AluSz6|SINE|Alu	5179	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
167564	chr3	129401151	129402230	+	0	NA	exon (NM_207307, exon 9 of 9)	exon (NM_207307, exon 9 of 9)	-2251	NR_003111	132241		NR_003111	ENSG00000290993	RPL32P3	-	ribosomal protein L32 pseudogene 3	pseudo
232348	chr9	135502701	135503300	+	0	NA	TTS (NR_121579)	TTS (NR_121579)	2318	NM_016034	51116		NM_016034	ENSG00000122140	MRPS2	CGI-91|COXPD36|MRP-S2|S2mt|uS2m	mitochondrial ribosomal protein S2	protein-coding
9972	chr1	54861321	54861780	+	0	NA	intron (NM_014762, intron 6 of 8)	L2a|LINE|L2	25645	NM_014762	1718		NM_014762	ENSG00000116133	DHCR24	DCE|Nbla03646|SELADIN1|seladin-1	24-dehydrocholesterol reductase	protein-coding
77429	chr15	84169421	84169880	+	0	NA	non-coding (NR_033787, exon 1 of 1)	non-coding (NR_033787, exon 1 of 1)	1334	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
153172	chr22	23827771	23827930	+	0	NA	intron (NM_003073, intron 7 of 8).2	intron (NM_003073, intron 7 of 8).2	11156	NM_001135751	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
180074	chr5	1101701	1101900	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	10263	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
69376	chr14	94029321	94029600	+	0	NA	intron (NM_023112, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	3120	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
96788	chr17	41803721	41803980	+	0	NA	intron (NM_006455, intron 6 of 7)	L2b|LINE|L2	8099	NM_006455	10609		NM_006455	ENSG00000141696	P3H4	LEPREL4|NO55|NOL55|SC65	prolyl 3-hydroxylase family member 4 (inactive)	protein-coding
235770	chrX	49054871	49055230	+	0	NA	intron (NM_001271836, intron 1 of 9)	intron (NM_001271836, intron 1 of 9)	1478	NM_001271836	90060		NM_033626	ENSG00000147144	CCDC120	JM11	coiled-coil domain containing 120	protein-coding
92813	chr17	16019401	16020130	+	0	NA	intron (NM_017775, intron 7 of 9)	L1ME3Cz|LINE|L1	19941	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
4158	chr1	19369301	19369700	+	0	NA	intron (NM_001206540, intron 4 of 9)	intron (NM_001206540, intron 4 of 9)	57174	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
195393	chr6	36764801	36765200	+	0	NA	intron (NM_001376889, intron 12 of 21)	intron (NM_001376889, intron 12 of 21)	795	NM_001376888	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
161442	chr3	42072051	42072350	+	0	NA	Intergenic	Intergenic	-15000	NM_001349245	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
28365	chr10	47208201	47208530	+	0	NA	Intergenic	Intergenic	-91832	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
171819	chr4	668351	668980	+	0	NA	intron (NM_001145291, intron 21 of 21)	intron (NM_001145291, intron 21 of 21)	5611	NM_007100	521		NM_007100	ENSG00000169020	ATP5ME	ATP5I|ATP5K	ATP synthase membrane subunit e	protein-coding
15256	chr1	149630401	149631150	+	0	NA	intron (NR_111950, intron 1 of 8)	LTR24C|LTR|ERV1	23763	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
114502	chr19	12779251	12779630	+	0	NA	Intergenic	Intergenic	-3888	NM_013312	29911		NM_013312	ENSG00000095066	HOOK2	HK2	hook microtubule tethering protein 2	protein-coding
78098	chr15	90259721	90259980	+	0	NA	TTS (NR_104604)	TTS (NR_104604)	-5813	NR_028052	51335		NM_016645	ENSG00000182768	NGRN	DSC92	neugrin, neurite outgrowth associated	protein-coding
227305	chr9	89419821	89421530	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	59215	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
224264	chr9	6037951	6038050	+	0	NA	Intergenic	Intergenic	-22376	NM_001243203	26953		NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
66358	chr14	61463721	61464330	+	0	NA	intron (NM_006255, intron 9 of 13)	L1MA8|LINE|L1	106169	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
6187	chr1	27443451	27443550	+	0	NA	intron (NM_006990, intron 1 of 8)	AluSq2|SINE|Alu	46667	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
199414	chr6	116664201	116664600	+	0	NA	intron (NM_001361191, intron 1 of 8)	AluSx1|SINE|Alu	4366	NM_145062	221302		NM_145062	ENSG00000153975	ZUP1	C6orf113|DUB|ZUFSP	zinc finger containing ubiquitin peptidase 1	protein-coding
13918	chr1	120068821	120070200	+	0	NA	5' UTR (NM_024408, exon 1 of 34)	5' UTR (NM_024408, exon 1 of 34)	152	NM_024408	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
79387	chr16	657821	658550	+	0	NA	exon (NM_145294, exon 22 of 41)	exon (NM_145294, exon 22 of 41)	8820	NM_145294	197335		NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19|POC16	WD repeat domain 90	protein-coding
221493	chr8	124527251	124527550	+	0	NA	intron (NM_032026, intron 1 of 11)	MER72B|LTR|ERV1	11685	NM_032026	83940		NM_032026	ENSG00000147687	TATDN1	CDA11	TatD DNase domain containing 1	protein-coding
116047	chr19	17210501	17210700	+	0	NA	intron (NM_004145, intron 37 of 39)	intron (NM_004145, intron 37 of 39)	-4757	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
87980	chr16	80579921	80580820	+	0	NA	Intergenic	Intergenic	-7562	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
28390	chr10	47472101	47472300	+	0	NA	intron (NM_001040084, intron 9 of 11)	intron (NM_001040084, intron 9 of 11)	11915	NM_001040084	653145		NM_001040084	ENSG00000265190	ANXA8	ANX8|CH17-360D5.2	annexin A8	protein-coding
231257	chr9	129994901	129996680	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	47399	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
82976	chr16	21954851	21954950	+	0	NA	intron (NM_003366, intron 1 of 13)	AluSx1|SINE|Alu	1539	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
101259	chr17	66312621	66313130	+	0	NA	intron (NM_002737, intron 2 of 16)	AluSz6|SINE|Alu	10262	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
222610	chr8	141037171	141037330	+	0	NA	Intergenic	AluSz6|SINE|Alu	-35171	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
197683	chr6	85600851	85601230	+	0	NA	Intergenic	Intergenic	-6884	NM_001350536	57231		NM_020468	ENSG00000135317	SNX14	RGS-PX2|SCAR20	sorting nexin 14	protein-coding
178889	chr4	156290421	156290500	+	0	NA	Intergenic	L1PA2|LINE|L1	-336594	NM_001334	1519		NM_001334	ENSG00000256043	CTSO	CTSO1	cathepsin O	protein-coding
31072	chr10	89003301	89003700	+	0	NA	intron (NR_135315, intron 2 of 6)	intron (NR_135315, intron 2 of 6)	-10525	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
176391	chr4	88697051	88698850	+	0	NA	promoter-TSS (NM_153757)	promoter-TSS (NM_153757)	-121	NM_153757	266812		NM_153757	ENSG00000177432	NAP1L5	DRLM	nucleosome assembly protein 1 like 5	protein-coding
122116	chr19	48807701	48808280	+	0	NA	5' UTR (NM_001284325, exon 2 of 12)	5' UTR (NM_001284325, exon 2 of 12)	3039	NM_001284325	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
99286	chr17	49762151	49762450	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	1831	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
224786	chr9	22079471	22080430	+	0	NA	intron (NR_003529, intron 12 of 18)	intron (NR_003529, intron 12 of 18)	-70637	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
2368	chr1	9316021	9316480	+	0	NA	intron (NM_025106, intron 1 of 2)	intron (NM_025106, intron 1 of 2)	23356	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
15776	chr1	151189351	151190450	+	0	NA	intron (NM_001271087, intron 1 of 5)	intron (NM_001271087, intron 1 of 5)	297	NM_001271088	6944		NM_005997	ENSG00000163159	VPS72	CFL1|Swc2|TCFL1|YL-1|YL1	vacuolar protein sorting 72 homolog	protein-coding
14749	chr1	146001171	146002150	+	0	NA	Intergenic	MIRc|SINE|MIR	-5081	NM_006472	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
149650	chr21	33549771	33550230	+	0	NA	promoter-TSS (NR_106756)	promoter-TSS (NR_106756)	-662	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
151049	chr21	44657301	44658250	+	0	NA	promoter-TSS (NM_198697)	promoter-TSS (NM_198697)	-157	NM_198697	386683		NM_198697	ENSG00000205439	KRTAP12-3	KRTAP12.3	keratin associated protein 12-3	protein-coding
121385	chr19	46909301	46909500	+	0	NA	intron (NM_004491, intron 1 of 6)	intron (NM_004491, intron 1 of 6)	48403	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
159901	chr3	16903451	16904150	+	0	NA	intron (NM_001144382, intron 1 of 5)	Charlie24|DNA|hAT-Charlie	18845	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
74047	chr15	52483001	52483280	+	0	NA	intron (NM_000259, intron 1 of 40)	intron (NM_000259, intron 1 of 40)	45740	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
118182	chr19	35066621	35067480	+	0	NA	TTS (NM_001375441)	TTS (NM_001375441)	25329	NM_001384133	3249		NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
223473	chr8	144047271	144047780	+	0	NA	TTS (NM_001134374)	TTS (NM_001134374)	-1873	NR_158554	392275		NR_158554		SMPD5	MA-nSMase	sphingomyelin phosphodiesterase 5 (pseudogene)	pseudo
59719	chr13	29801571	29801930	+	0	NA	intron (NM_007106, intron 1 of 4)	L1PREC2|LINE|L1	48867	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
64243	chr14	23117201	23117400	+	0	NA	TTS (NM_001805)	TTS (NM_001805)	1955	NM_001805	1053		NM_001805	ENSG00000092067	CEBPE	C/EBP-epsilon|CRP1|IMD108|SGD1|c/EBP epsilon	CCAAT enhancer binding protein epsilon	protein-coding
79189	chr16	321621	322630	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	30598	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
85507	chr16	50766771	50767730	+	0	NA	intron (NM_015247, intron 7 of 19)	Tigger1|DNA|TcMar-Tigger	24835	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
161711	chr3	43694471	43694630	+	0	NA	intron (NM_001365649, intron 1 of 6)	intron (NM_001365649, intron 1 of 6)	-2956	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
114935	chr19	13972071	13972430	+	0	NA	intron (NM_002918, intron 9 of 20)	AluSx|SINE|Alu	-18858	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
48406	chr12	9658671	9658830	+	0	NA	TTS (NR_046450)	TTS (NR_046450)	10703	NR_002814	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
45423	chr11	118394021	118394600	+	0	NA	intron (NM_004788, intron 19 of 19)	AluJb|SINE|Alu	-7079	NR_033759	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
176897	chr4	102793771	102793930	+	0	NA	TTS (NM_181893)	TTS (NM_181893)	16813	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
149900	chr21	36126451	36126650	+	0	NA	promoter-TSS (NR_040084)	promoter-TSS (NR_040084)	90	NR_040084	100133286		NR_040084	ENSG00000230212	CBR1-AS1	-	CBR1 antisense RNA 1	ncRNA
198561	chr6	106975401	106975680	+	0	NA	promoter-TSS (NM_001291737)	promoter-TSS (NM_001291737)	-75	NM_013230	100133941		NM_013230	ENSG00000272398	CD24	CD24A	CD24 molecule	protein-coding
99073	chr17	48949001	48949350	+	0	NA	Intergenic	AluSx|SINE|Alu	-4333	NM_001317192	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
159651	chr3	15329221	15329480	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	3236	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
168781	chr3	151439601	151439830	+	0	NA	intron (NM_001385063, intron 8 of 8)	intron (NM_001385063, intron 8 of 8)	1065	NM_001178145	285313		NM_178822	ENSG00000152580	IGSF10	CMF608	immunoglobulin superfamily member 10	protein-coding
174633	chr4	40316101	40316700	+	0	NA	promoter-TSS (NR_121640)	promoter-TSS (NR_121640)	-84	NR_121640	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
226484	chr9	71756721	71757300	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	11503	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
151192	chr21	45086371	45086530	+	0	NA	intron (NM_001346688, intron 1 of 11)	L1MB7|LINE|L1	11399	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
111112	chr19	3212171	3212330	+	0	NA	Intergenic	AluJr|SINE|Alu	-12411	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
78964	chr15	101394851	101394950	+	0	NA	intron (NM_138319, intron 7 of 20)	intron (NM_138319, intron 7 of 20)	60463	NR_132373	105371027		NR_132373	ENSG00000259764	PCSK6-AS1	-	PCSK6 antisense RNA 1	ncRNA
65089	chr14	39607651	39607950	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-175300	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
61081	chr13	48399671	48400180	+	0	NA	intron (NM_000321, intron 17 of 26)	intron (NM_000321, intron 17 of 26)	13188	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
206575	chr7	35686151	35686330	+	0	NA	intron (NM_022373, intron 2 of 8)	AluY|SINE|Alu	8895	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
45375	chr11	118305701	118307500	+	0	NA	intron (NM_000733, intron 2 of 8)	intron (NM_000733, intron 2 of 8)	1870	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
22804	chr1	224617221	224617480	+	0	NA	intron (NM_152495, intron 1 of 5)	CpG	1033	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
133515	chr2	120174301	120174500	+	0	NA	intron (NM_020909, intron 24 of 24)	AluJb|SINE|Alu	49000	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
128315	chr2	54656821	54657080	+	0	NA	intron (NM_178313, intron 28 of 30)	intron (NM_178313, intron 28 of 30)	-68062	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
162663	chr3	48916171	48916330	+	0	NA	Intergenic	AluJb|SINE|Alu	-2592	NM_001349230	10425		NM_006321	ENSG00000177479	ARIH2	ARI2|TRIAD1	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding
200156	chr6	130467301	130467580	+	0	NA	Intergenic	Intergenic	30323	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
184758	chr5	109876251	109876550	+	0	NA	Intergenic	Intergenic	-6782	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
44163	chr11	96213471	96213830	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-127788	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
229469	chr9	121971101	121971430	+	0	NA	intron (NM_001139442, intron 6 of 8)	SVA_F|Retroposon|SVA	122043	NM_001139442	158135		NM_194252	ENSG00000175764	TTLL11	C9orf148|C9orf20|TTLL11-IT1|bA244O19.1	tubulin tyrosine ligase like 11	protein-coding
29282	chr10	69222101	69223580	+	0	NA	intron (NM_025130, intron 1 of 17)	intron (NM_025130, intron 1 of 17)	2508	NM_025130	80201		NM_025130	ENSG00000156510	HKDC1	RP92	hexokinase domain containing 1	protein-coding
100650	chr17	63696251	63697000	+	0	NA	TTS (NM_203351)	TTS (NM_203351)	3500	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
160834	chr3	33063651	33064180	+	0	NA	intron (NM_000404, intron 5 of 15)	intron (NM_000404, intron 5 of 15)	32917	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
6566	chr1	28739071	28740250	+	0	NA	intron (NM_016258, intron 3 of 4)	intron (NM_016258, intron 3 of 4)	2720	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
235123	chrX	40734101	40734300	+	0	NA	intron (NM_004229, intron 1 of 30)	intron (NM_004229, intron 1 of 30)	1342	NM_004229	9282		NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
146554	chr20	49990321	49990900	+	0	NA	Intergenic	L2c|LINE|L2	7630	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
215171	chr7	155662301	155662500	+	0	NA	intron (NM_053043, intron 1 of 17)	L1M4b|LINE|L1	17739	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
103814	chr17	79095651	79096600	+	0	NA	intron (NM_001082575, intron 12 of 14)	intron (NM_001082575, intron 12 of 14)	21301	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
153068	chr22	23302601	23302800	+	0	NA	intron (NM_004327, intron 16 of 22)	intron (NM_004327, intron 16 of 22)	-23916	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
183238	chr5	76384351	76385330	+	0	NA	Intergenic	MIRb|SINE|MIR	-18445	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
70947	chr14	104662601	104663000	+	0	NA	non-coding (NR_135293, exon 2 of 2)	non-coding (NR_135293, exon 2 of 2)	2758	NR_135293	101929634		NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
236874	chrX	81195701	81196050	+	0	NA	intron (NM_030763, intron 1 of 6)	intron (NM_030763, intron 1 of 6)	6038	NM_030763	79366		NM_030763	ENSG00000198157	HMGN5	NBP-45|NSBP1	high mobility group nucleosome binding domain 5	protein-coding
176436	chr4	89274971	89275130	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	32750	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
162764	chr3	49065671	49066030	+	0	NA	intron (NM_001320580, intron 3 of 10)	AluY|SINE|Alu	27782	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
206462	chr7	32917051	32917150	+	0	NA	non-coding (NR_003500, exon 6 of 6)	non-coding (NR_003500, exon 6 of 6)	-25340	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
100900	chr17	64401621	64402680	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-11290	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
117559	chr19	21084471	21084630	+	0	NA	intron (NM_182515, intron 2 of 4)	MIR3|SINE|MIR	2347	NM_182515	148206		NM_182515	ENSG00000160352	ZNF714	-	zinc finger protein 714	protein-coding
174734	chr4	42865571	42865900	+	0	NA	Intergenic	Intergenic	-26978	NM_001080476	389207		NM_001080476	ENSG00000215203	GRXCR1	DFNB25|PPP1R88	glutaredoxin and cysteine rich domain containing 1	protein-coding
227667	chr9	92980121	92981100	+	0	NA	intron (NM_001369951, intron 3 of 17)	L1M3|LINE|L1	6141	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
23069	chr1	226638751	226639250	+	0	NA	intron (NM_002221, intron 6 of 7)	intron (NM_002221, intron 6 of 7)	36068	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
173254	chr4	7034001	7034200	+	0	NA	TTS (NM_001330638)	TTS (NM_001330638)	8901	NM_153376	257236		NM_153376	ENSG00000173013	CFAP184	CCDC96	cilia and flagella associated protein 184	protein-coding
194219	chr6	32195001	32199000	+	0	NA	exon (NM_004557, exon 28 of 30)	exon (NM_004557, exon 28 of 30)	-1477	NM_022107	63940		NM_022107	ENSG00000213654	GPSM3	AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1	G protein signaling modulator 3	protein-coding
233883	chrX	1581021	1581500	+	0	NA	Intergenic	MER77|LTR|ERVL	-10344	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
131440	chr2	96315371	96316330	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	-9467	NM_001008949	150771		NM_178495	ENSG00000198885	ITPRIPL1	D1B|KIAA1754L	ITPRIP like 1	protein-coding
192584	chr6	25960221	25960850	+	0	NA	Intergenic	MER41B|LTR|ERV1	-2267	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
197266	chr6	70599221	70599530	+	0	NA	Intergenic	Intergenic	32445	NM_145267	135154		NM_145267	ENSG00000154079	SDHAF4	C6orf57|Sdh8	succinate dehydrogenase complex assembly factor 4	protein-coding
71032	chr14	104779051	104779780	+	0	NA	intron (NM_001382433, intron 5 of 15)	intron (NM_001382433, intron 5 of 15)	14186	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
203830	chr7	1420901	1421100	+	0	NA	Intergenic	Intergenic	38470	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
119726	chr19	41221871	41222230	+	0	NA	exon (NM_001699, exon 4 of 19)	exon (NM_001699, exon 4 of 19)	2827	NM_021913	558		NM_001699	ENSG00000167601	AXL	ARK|AXL3|JTK11|Tyro7|UFO	AXL receptor tyrosine kinase	protein-coding
76709	chr15	75874401	75874650	+	0	NA	intron (NM_173469, intron 5 of 12)	AluSz|SINE|Alu	-29334	NM_012170	26263		NM_012170	ENSG00000167196	FBXO22	FBX22|FISTC1	F-box protein 22	protein-coding
221215	chr8	120861371	120862130	+	0	NA	Intergenic	L1PBa|LINE|L1	-49704	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
92449	chr17	8471871	8472030	+	0	NA	Intergenic	Intergenic	36066	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
23603	chr1	230109801	230110250	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	42787	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
191352	chr6	7143271	7143650	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	35499	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
138851	chr2	216606651	216607030	+	0	NA	promoter-TSS (NR_110392)	promoter-TSS (NR_110392)	98	NR_110392	101928232		NR_110392		LINC01280	-	long intergenic non-protein coding RNA 1280	ncRNA
57848	chr12	123266901	123267330	+	0	NA	intron (NM_004642, intron 2 of 3)	intron (NM_004642, intron 2 of 3)	1139	NM_001270434	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
46824	chr11	130861771	130862450	+	0	NA	promoter-TSS (NR_125383)	promoter-TSS (NR_125383)	0	NR_125383	100507431		NR_125383		LINC02551	-	long intergenic non-protein coding RNA 2551	ncRNA
78328	chr15	90988351	90989480	+	0	NA	TTS (NR_051984)	TTS (NR_051984)	5620	NM_199413	9055		NM_003981	ENSG00000198901	PRC1	ASE1|MAP65	protein regulator of cytokinesis 1	protein-coding
153096	chr22	23495971	23496550	+	0	NA	Intergenic	Intergenic	-9280	NR_165489	388882		NR_110539	ENSG00000178248	FAM230I	LINC01658	family with sequence similarity 230 member I	ncRNA
16007	chr1	152032771	152033130	+	0	NA	intron (NM_005620, intron 2 of 2)	MIRc|SINE|MIR	4054	NM_005620	6282		NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
113016	chr19	7922451	7922880	+	0	NA	non-coding (NR_030717, exon 5 of 5)	non-coding (NR_030717, exon 5 of 5)	1650	NR_030717	6618		NM_003083	ENSG00000104976	SNAPC2	PTFDELTA|SNAP45	small nuclear RNA activating complex polypeptide 2	protein-coding
228285	chr9	98082471	98082830	+	0	NA	intron (NM_018946, intron 5 of 5)	intron (NM_018946, intron 5 of 5)	25918	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
83484	chr16	27405721	27406790	+	0	NA	intron (NM_181079, intron 2 of 9)	intron (NM_181079, intron 2 of 9)	4081	NM_181078	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
154558	chr22	36235621	36235930	+	0	NA	intron (NM_145637, intron 2 of 5)	(GT)n|Simple_repeat|Simple_repeat	3752	NM_030882	23780		NM_030882	ENSG00000128335	APOL2	APOL-II|APOL3	apolipoprotein L2	protein-coding
127533	chr2	42323521	42323850	+	0	NA	intron (NM_019063, intron 19 of 22)	AluSz|SINE|Alu	36353	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
197298	chr6	71791951	71792050	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-94703	NM_001350412	22999		NM_014989	ENSG00000079841	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
57141	chr12	121233021	121233480	+	0	NA	intron (NR_046373, intron 10 of 10)	intron (NR_046373, intron 10 of 10)	23121	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
225452	chr9	35110521	35112780	+	0	NA	promoter-TSS (NM_001317991)	promoter-TSS (NM_001317991)	-198	NM_001317991	80256		NM_025182	ENSG00000005238	ATOSB	FAM214B|KIAA1539	atos homolog B	protein-coding
186012	chr5	133962371	133962730	+	0	NA	intron (NM_020199, intron 1 of 2)	L2a|LINE|L2	6075	NM_020199	56951		NM_020199	ENSG00000113583	C5orf15	HTGN29|KCT2	chromosome 5 open reading frame 15	protein-coding
144627	chr20	35918771	35918930	+	0	NA	intron (NM_016436, intron 13 of 17)	intron (NM_016436, intron 13 of 17)	35652	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
93255	chr17	17966251	17966550	+	0	NA	intron (NM_001082968, intron 1 of 14)	A-rich|Low_complexity|Low_complexity	6000	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
28020	chr10	43206151	43206450	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	23439	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
55735	chr12	108324801	108325200	+	0	NA	intron (NM_001142344, intron 1 of 2)	intron (NM_001142344, intron 1 of 2)	-4338	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
86963	chr16	68131801	68132730	+	0	NA	intron (NM_173165, intron 3 of 9)	intron (NM_173165, intron 3 of 9)	46895	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
138965	chr2	218267171	218268230	+	0	NA	intron (NM_001302545, intron 2 of 10)	intron (NM_001302545, intron 2 of 10)	2437	NM_001087	14		NM_001087	ENSG00000127837	AAMP	-	angio associated migratory cell protein	protein-coding
151343	chr21	45638051	45638350	+	0	NA	Intergenic	Intergenic	-5525	NM_001382287	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
185357	chr5	127268551	127268650	+	0	NA	Intergenic	L1PA5|LINE|L1	-22164	NM_001308121	84466		NM_032446	ENSG00000145794	MEGF10	CMYP10A|CMYP10B|EMARDD|SR-F3	multiple EGF like domains 10	protein-coding
193911	chr6	31629371	31629980	+	0	NA	exon (NM_080686, exon 14 of 31).2	exon (NM_080686, exon 14 of 31).2	-4112	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
145582	chr20	44516551	44516850	+	0	NA	intron (NM_006811, intron 1 of 9)	AluJr|SINE|Alu	5370	NM_006811	10955		NM_006811	ENSG00000132824	SERINC3	AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1	serine incorporator 3	protein-coding
90898	chr17	2416901	2417430	+	0	NA	3' UTR (NM_024086, exon 10 of 10)	3' UTR (NM_024086, exon 10 of 10)	-1729	NR_028335	284009		NM_001025459		LOC284009	-	uncharacterized LOC284009	ncRNA
60619	chr13	42271401	42273180	+	0	NA	intron (NM_016248, intron 1 of 12)	CpG	138	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
151227	chr21	45262571	45262750	+	0	NA	Intergenic	MER57C1|LTR|ERV1	25235	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
48355	chr12	9405971	9406850	+	0	NA	intron (NR_144634, intron 1 of 8)	HERVE-int|LTR|ERV1	1004	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
62904	chr13	110875371	110875530	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-5142	NR_027701	283487		NM_178514	ENSG00000255874	PRECSIT	C13orf29|LINC00346|NCRNA00346	p53 regulated carcinoma associated Stat3 activating long intergenic non-protein coding transcript	ncRNA
77501	chr15	84638121	84638830	+	0	NA	TTS (NM_032856)	TTS (NM_032856)	7015	NR_003654	54581		NM_022050		SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
159378	chr3	13353651	13354150	+	0	NA	intron (NM_024923, intron 17 of 39)	intron (NM_024923, intron 17 of 39)	66422	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
84361	chr16	30222671	30224500	+	0	NA	exon (NM_001355401, exon 11 of 11)	exon (NM_001355401, exon 11 of 11)	-16658	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
36846	chr11	10304611	10305100	+	0	NA	promoter-TSS (NM_001124)	promoter-TSS (NM_001124)	-218	NM_001124	133		NM_001124	ENSG00000148926	ADM	AM|PAMP	adrenomedullin	protein-coding
18756	chr1	167496551	167497000	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	21754	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
89304	chr16	88715451	88715750	+	0	NA	TTS (NM_001012759)	TTS (NM_001012759)	737	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
42114	chr11	67606151	67607500	+	0	NA	promoter-TSS (NM_007103)	promoter-TSS (NM_007103)	-111	NM_007103	4723		NM_007103	ENSG00000167792	NDUFV1	CI-51K|CI51KD|MC1DN4|UQOR1	NADH:ubiquinone oxidoreductase core subunit V1	protein-coding
58313	chr12	131045501	131046130	+	0	NA	intron (NM_001330497, intron 14 of 25)	intron (NM_001330497, intron 14 of 25)	-51839	NR_131950	105755954		NR_131950		ADGRD1-AS1	LACAT8	ADGRD1 antisense RNA 1	ncRNA
90191	chr17	407651	408150	+	0	NA	intron (NR_136407, intron 2 of 2)	MLT1G3|LTR|ERVL-MaLR	-2425	NM_001013672	400566		NM_001013672	ENSG00000187624	LIAT1	C17orf97|CK20	ligand of ATE1	protein-coding
29919	chr10	73250821	73251080	+	0	NA	exon (NM_016065, exon 3 of 3)	exon (NM_016065, exon 3 of 3)	1694	NM_016065	51021		NM_016065	ENSG00000182180	MRPS16	CGI-132|COXPD2|MRP-S16|RPMS16|S16mt|bS16m	mitochondrial ribosomal protein S16	protein-coding
136604	chr2	178481771	178481930	+	0	NA	intron (NM_019091, intron 1 of 7)	intron (NM_019091, intron 1 of 7)	1393	NM_019091	65977		NM_019091	ENSG00000116095	PLEKHA3	FAPP1	pleckstrin homology domain containing A3	protein-coding
173464	chr4	8575951	8576050	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	-4392	NR_045511	27201		NM_080819	ENSG00000155269	GPR78	-	G protein-coupled receptor 78	protein-coding
148104	chr20	63351001	63351200	+	0	NA	intron (NR_046317, intron 4 of 5)	(ACGCCC)n|Simple_repeat|Simple_repeat	-8888	NR_110634	100130587		NR_110634	ENSG00000203900	LOC100130587	-	uncharacterized LOC100130587	ncRNA
197456	chr6	75210901	75211350	+	0	NA	Intergenic	AluSz|SINE|Alu	-5072	NM_080645	1303		NM_004370	ENSG00000111799	COL12A1	BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2	collagen type XII alpha 1 chain	protein-coding
105314	chr17	82553351	82553730	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	33808	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
169935	chr3	179017151	179017530	+	0	NA	non-coding (NR_164720, exon 6 of 6)	non-coding (NR_164720, exon 6 of 6)	52002	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
206252	chr7	29254921	29255180	+	0	NA	intron (NM_001293072, intron 1 of 12)	intron (NM_001293072, intron 1 of 12)	-46080	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
97837	chr17	44941671	44942250	+	0	NA	intron (NM_001264573, intron 1 of 14)	intron (NM_001264573, intron 1 of 14)	5813	NM_001264573	146909		NM_001080443	ENSG00000186185	KIF18B	-	kinesin family member 18B	protein-coding
106561	chr18	21685371	21686080	+	0	NA	intron (NM_138340, intron 3 of 8)	AluSz|SINE|Alu	2207	NR_031565	100302135		NR_031565	ENSG00000221493	MIR320C1	MIR320C-1|MIRN320C1|hsa-mir-320c-1|mir-320c-1	microRNA 320c-1	ncRNA
168225	chr3	141304771	141304930	+	0	NA	Intergenic	MIRb|SINE|MIR	-19336	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
216060	chr8	10327471	10328030	+	0	NA	intron (NM_001199729, intron 6 of 6).2	AluY|SINE|Alu	-146815	NR_120604	101929191		NR_120604	ENSG00000253641	LINC03022	LINCR-0001	long intergenic non-protein coding RNA 3022	ncRNA
59291	chr13	24258621	24259550	+	0	NA	intron (NM_153023, intron 3 of 11)	intron (NM_153023, intron 3 of 11)	-4646	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
237693	chrX	124368051	124368430	+	0	NA	intron (NM_002351, intron 2 of 3)	AluSx|SINE|Alu	21677	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
238308	chrX	149498951	149499350	+	0	NA	intron (NM_001166550, intron 4 of 8)	AluSq2|SINE|Alu	6156	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
109493	chr19	823151	823750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1495	NM_001270366	79948		NM_024888	ENSG00000129951	PLPPR3	LPPR3|LPR3|PRG-2|PRG2	phospholipid phosphatase related 3	protein-coding
223508	chr8	144098671	144098830	+	0	NA	non-coding (NR_038270, exon 8 of 8)	non-coding (NR_038270, exon 8 of 8)	3674	NM_001916	1537		NM_001916	ENSG00000179091	CYC1	MC3DN6|UQCR4	cytochrome c1	protein-coding
72574	chr15	34583201	34584650	+	0	NA	promoter-TSS (NR_027410)	promoter-TSS (NR_027410)	-274	NM_001023567	440270		NM_001023567	ENSG00000215252	GOLGA8B	GOLGA5	golgin A8 family member B	protein-coding
110138	chr19	1607071	1607230	+	0	NA	Intergenic	AluSp|SINE|Alu	-1688	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
67971	chr14	74883771	74884180	+	0	NA	intron (NR_045209, intron 2 of 13)	L2c|LINE|L2	2059	NM_001244883	1743		NM_001933	ENSG00000119689	DLST	DLTS|KGD2|PGL7|PPGL7	dihydrolipoamide S-succinyltransferase	protein-coding
136954	chr2	190372251	190372880	+	0	NA	TTS (NM_002194)	TTS (NM_002194)	28976	NM_001128928	3628		NM_002194	ENSG00000151689	INPP1	-	inositol polyphosphate-1-phosphatase	protein-coding
194144	chr6	32014521	32014780	+	0	NA	promoter-TSS (NM_001002029).4	promoter-TSS (NM_001002029).4	-145	NM_001242823	100293534		NM_001242823		C4B_2	-	complement component 4B (Chido/Rodgers blood group), copy 2	protein-coding
211197	chr7	102608901	102609580	+	0	NA	intron (NM_001079877, intron 3 of 19)	intron (NM_001079877, intron 3 of 19)	7516	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
235383	chrX	45001021	45001280	+	0	NA	intron (NM_001291416, intron 4 of 28)	HERVIP10FH-int|LTR|ERV1	127962	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
167379	chr3	128795971	128796130	+	0	NA	intron (NM_004637, intron 2 of 5)	AluY|SINE|Alu	-50758	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
177777	chr4	122812271	122812500	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-14323	NM_002006	2247		NM_002006	ENSG00000138685	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2	protein-coding
33943	chr10	124621871	124622280	+	0	NA	3' UTR (NM_014661, exon 5 of 5)	3' UTR (NM_014661, exon 5 of 5)	-81953	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
67302	chr14	69573021	69573480	+	0	NA	exon (NM_001271507, exon 2 of 2)	exon (NM_001271507, exon 2 of 2)	1621	NM_001271507	56936		NM_020181	ENSG00000267909	CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
28477	chr10	49538071	49539830	+	0	NA	intron (NM_001277059, intron 1 of 5)	CpG	171	NM_001277058	2074		NM_000124	ENSG00000225830	ERCC6	ARMD5|CKN2|COFS|COFS1|CSB|CSB-PGBD3|POF11|RAD26|UVSS1	ERCC excision repair 6, chromatin remodeling factor	protein-coding
35374	chr11	1287321	1287730	+	0	NA	intron (NM_001318516, intron 3 of 4)	CpG	15265	NM_001318514	54472		NM_019009	ENSG00000078902	TOLLIP	IL-1RAcPIP	toll interacting protein	protein-coding
150664	chr21	43431651	43432230	+	0	NA	Intergenic	Intergenic	-4809	NM_001320643	102724428		NM_001320643	ENSG00000275993	LOC102724428	SIK|SIK-1|SIK1|SIK1B|SNF1LK	salt inducible kinase 1B (putative)	protein-coding
182131	chr5	56147971	56148780	+	0	NA	intron (NM_024669, intron 6 of 11)	intron (NM_024669, intron 6 of 11)	84955	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
53110	chr12	57775971	57776130	+	0	NA	intron (NM_206914, intron 3 of 3)	L2c|LINE|L2	3436	NM_206914	25895		NM_015433	ENSG00000123427	EEF1AKMT3	FAM119B|METTL21B	EEF1A lysine methyltransferase 3	protein-coding
73780	chr15	45634501	45635850	+	0	NA	intron (NM_021199, intron 1 of 9)	CpG	146	NM_021199	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
229259	chr9	117546821	117547180	+	0	NA	Intergenic	Intergenic	-101606	NR_109806	101928797		NR_109806	ENSG00000233569	LOC101928797	-	uncharacterized LOC101928797	ncRNA
8892	chr1	43840651	43840950	+	0	NA	intron (NM_001270466, intron 4 of 4)	MER11C|LTR|ERVK	2178	NR_106727	102464830		NR_106727	ENSG00000283477	MIR6079	hsa-mir-6079	microRNA 6079	ncRNA
210409	chr7	100017421	100017780	+	0	NA	intron (NM_001287055, intron 1 of 3)	intron (NM_001287055, intron 1 of 3)	2004	NR_144477	7586		NM_003439	ENSG00000106261	ZKSCAN1	KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
237794	chrX	129842751	129842850	+	0	NA	intron (NM_016032, intron 2 of 10)	intron (NM_016032, intron 2 of 10)	799	NM_001008222	51114		NM_016032	ENSG00000188706	ZDHHC9	CGI89|CXorf11|DHHC9|MMSA1|MRXSR|MRXSZ|ZDHHC10|ZNF379|ZNF380	zinc finger DHHC-type palmitoyltransferase 9	protein-coding
65835	chr14	54897901	54898530	+	0	NA	intron (NM_001024024, intron 1 of 6)	AluJo|SINE|Alu	4609	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
44329	chr11	102406951	102407250	+	0	NA	intron (NM_052932, intron 2 of 4)	intron (NM_052932, intron 2 of 4)	45665	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
152833	chr22	21959551	21960000	+	0	NA	intron (NM_001349845, intron 15 of 18)	intron (NM_001349845, intron 15 of 18)	-6927	NM_014634	9647		NM_014634	ENSG00000100034	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent 1F	protein-coding
59562	chr13	27374551	27375080	+	0	NA	Intergenic	Intergenic	-49804	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
224040	chr9	3500801	3501000	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	-11466	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
143915	chr20	32621151	32621530	+	0	NA	Intergenic	MIRb|SINE|MIR	33861	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
136703	chr2	181142521	181143080	+	0	NA	intron (NR_130784, intron 1 of 4)	MIR|SINE|MIR	18963	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
35	chr1	185851	186980	+	0	NA	Intergenic	Intergenic	1543	NR_128720	103504738		NR_128720	ENSG00000278739	MIR6859-4	hsa-mir-6859-4	microRNA 6859-4	ncRNA
181698	chr5	50631921	50632380	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-33781	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
188495	chr5	154813521	154814430	+	0	NA	exon (NM_001367717, exon 19 of 19)	exon (NM_001367717, exon 19 of 19)	-15483	NR_039667	100616306		NR_039667	ENSG00000263361	MIR378H	-	microRNA 378h	ncRNA
96167	chr17	39706021	39706380	+	0	NA	intron (NM_001382783, intron 2 of 27)	intron (NM_001382783, intron 2 of 27)	6136	NM_004448	2064		NM_004448	ENSG00000141736	ERBB2	CD340|HER-2|HER-2/neu|HER2|MLN 19|MLN-19|NEU|NGL|TKR1|VSCN2|c-ERB-2|c-ERB2|p185(erbB2)	erb-b2 receptor tyrosine kinase 2	protein-coding
111947	chr19	4796301	4796900	+	0	NA	3' UTR (NM_018708, exon 1 of 1)	3' UTR (NM_018708, exon 1 of 1)	4866	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
139500	chr2	224532651	224533230	+	0	NA	intron (NM_003590, intron 3 of 15)	L2b|LINE|L2	37015	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
140493	chr2	233194601	233194800	+	0	NA	intron (NM_001017915, intron 23 of 26).2	AluSx1|SINE|Alu	-56871	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
67748	chr14	73710071	73710450	+	0	NA	Intergenic	Intergenic	4124	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
38633	chr11	46355371	46355730	+	0	NA	intron (NM_001199266, intron 1 of 30)	MIRc|SINE|MIR	-6056	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
47659	chr12	6318001	6318780	+	0	NA	exon (NM_001144856, exon 11 of 16)	exon (NM_001144856, exon 11 of 16)	5257	NM_001144857	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
150763	chr21	43788621	43790280	+	0	NA	promoter-TSS (NM_003683)	promoter-TSS (NM_003683)	-127	NM_003683	8568		NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
191873	chr6	15304851	15304950	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	56045	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
97014	chr17	42298921	42299500	+	0	NA	intron (NM_001288719, intron 4 of 17)	intron (NM_001288719, intron 4 of 17)	11154	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
83866	chr16	28911971	28912330	+	0	NA	intron (NM_024816, intron 5 of 12)	AluY|SINE|Alu	13088	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
84616	chr16	30696371	30696830	+	0	NA	Intergenic	AluSx1|SINE|Alu	1871	NM_001256932	730183		NM_001256932	ENSG00000261840	LOC730183	-	uncharacterized LOC730183	ncRNA
121125	chr19	46014651	46016200	+	0	NA	exon (NM_001267723, exon 7 of 14)	exon (NM_001267723, exon 7 of 14)	-3507	NR_030412	768217		NR_030412	ENSG00000211580	MIR769	MIRN769|hsa-mir-769|mir-769	microRNA 769	ncRNA
199848	chr6	127765571	127765730	+	0	NA	intron (NM_001010923, intron 4 of 5).2	Tigger3a|DNA|TcMar-Tigger	89538	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
19994	chr1	185170251	185170680	+	0	NA	intron (NM_017673, intron 4 of 18)	intron (NM_017673, intron 4 of 18)	13298	NM_017673	54823		NM_017673	ENSG00000116668	SWT1	C1orf26|HsSwt1	SWT1 RNA endoribonuclease homolog	protein-coding
118322	chr19	35543971	35544480	+	0	NA	intron (NM_014364, intron 9 of 10)	L2b|LINE|L2	-1401	NM_001242598	10430		NM_032635	ENSG00000105677	TMEM147	NEDFLPH|NIFIE14	transmembrane protein 147	protein-coding
115165	chr19	14421951	14422650	+	0	NA	Intergenic	AluYk4|SINE|Alu	-2917	NR_046366	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
212405	chr7	128133601	128133800	+	0	NA	Intergenic	AluSx1|SINE|Alu	51839	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
51023	chr12	49744021	49745000	+	0	NA	intron (NM_001098576, intron 1 of 9)	intron (NM_001098576, intron 1 of 9)	2701	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
1222	chr1	2270551	2270650	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	42281	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
180563	chr5	14702371	14703000	+	0	NA	Intergenic	Intergenic	-10009	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
228721	chr9	109116001	109116500	+	0	NA	intron (NM_032012, intron 1 of 17)	intron (NM_032012, intron 1 of 17)	3697	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
166424	chr3	113744101	113744400	+	0	NA	intron (NM_025146, intron 1 of 4)	AluJb|SINE|Alu	1999	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
202722	chr6	158871351	158871680	+	0	NA	intron (NR_160976, intron 1 of 2)	MER30|DNA|hAT-Charlie	1486	NR_160976	100130967		NM_001195032	ENSG00000203711	LINC02901	C6orf99	long intergenic non-protein coding RNA 2901	ncRNA
81463	chr16	8893501	8894030	+	0	NA	non-coding (NR_135826, exon 31 of 31)	non-coding (NR_135826, exon 31 of 31)	-24753	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
205284	chr7	9949921	9950000	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	315690	NR_002790	168741		NR_002790		PER3P1	PER4	PER3 pseudogene 1	pseudo
181666	chr5	50431421	50432150	+	0	NA	intron (NM_198449, intron 1 of 8)	intron (NM_198449, intron 1 of 8)	9503	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
131208	chr2	95052971	95053130	+	0	NA	intron (NM_022439, intron 2 of 2)	intron (NM_022439, intron 2 of 2)	27342	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
36825	chr11	9761371	9761730	+	0	NA	intron (NR_036485, intron 1 of 2)	MLT1M|LTR|ERVL-MaLR	-2017	NR_033972	440028		NR_033972	ENSG00000245522	LINC02709	-	long intergenic non-protein coding RNA 2709	ncRNA
183857	chr5	87122651	87122750	+	0	NA	intron (NR_105018, intron 1 of 3)	intron (NR_105018, intron 1 of 3)	2552	NR_105018	101929380		NR_105018		LOC101929380	-	uncharacterized LOC101929380	ncRNA
170826	chr3	189959821	189959900	+	0	NA	intron (NM_001134418, intron 14 of 14)	intron (NM_001134418, intron 14 of 14)	129938	NR_030642	100126340		NR_030642	ENSG00000216058	MIR944	MIRN944|hsa-mir-944|mir-944	microRNA 944	ncRNA
135982	chr2	172113551	172113850	+	0	NA	Intergenic	Intergenic	10694	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
25935	chr10	11339221	11339530	+	0	NA	intron (NR_126062, intron 1 of 2)	intron (NR_126062, intron 1 of 2)	5299	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
57557	chr12	122210271	122210630	+	0	NA	intron (NM_019887, intron 6 of 6)	AluY|SINE|Alu	6741	NM_030765	79369		NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
148565	chr20	64281751	64281850	+	0	NA	Intergenic	L1MB5|LINE|L1	-8585	NR_040415	107126285		NR_040415		SEPTIN14P20	C20orf69|LINC00266-1|NCRNA00266|NCRNA00266-1|RBRP|SEPT14P20|bA476I15.3	septin 14 pseudogene 20	pseudo
135213	chr2	159147121	159147580	+	0	NA	intron (NM_001350062, intron 5 of 23)	intron (NM_001350062, intron 5 of 23)	-39485	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
164726	chr3	68876071	68876340	+	0	NA	intron (NM_001005527, intron 3 of 5)	MER33|DNA|hAT-Charlie	56342	NM_182522	151647		NM_182522	ENSG00000163377	TAFA4	FAM19A4|TAFA-4	TAFA chemokine like family member 4	protein-coding
66606	chr14	63644451	63644950	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2829	NM_001382426	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
222077	chr8	130346201	130346600	+	0	NA	intron (NM_001362924, intron 3 of 30)	Plat_L3|LINE|CR1	-49867	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
5125	chr1	24886351	24886650	+	0	NA	Intergenic	Intergenic	32916	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
12053	chr1	98332071	98332250	+	0	NA	Intergenic	Intergenic	121449	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
21310	chr1	204510051	204510150	+	0	NA	Intergenic	AluSc8|SINE|Alu	-6279	NM_001204172	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
225262	chr9	34372151	34373030	+	0	NA	exon (NM_020702, exon 2 of 2)	exon (NM_020702, exon 2 of 2)	4308	NM_020702	57462		NM_020702	ENSG00000164976	MYORG	IBGC7|KIAA1161|NET37	myogenesis regulating glycosidase (putative)	protein-coding
27871	chr10	41858271	41858780	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	509520	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
186294	chr5	134561821	134562280	+	0	NA	intron (NM_001289985, intron 6 of 11)	intron (NM_001289985, intron 6 of 11)	35942	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
211222	chr7	102634271	102634750	+	0	NA	Intergenic	LTR33|LTR|ERVL	8281	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
85986	chr16	57434111	57434780	+	0	NA	intron (NM_001308358, intron 4 of 7)	intron (NM_001308358, intron 4 of 7)	12940	NM_020313	57019		NM_020313	ENSG00000005194	CIAPIN1	Anamorsin|CIAE2|DRE2|PRO0915	cytokine induced apoptosis inhibitor 1	protein-coding
94295	chr17	28726901	28727600	+	0	NA	promoter-TSS (NM_001160407)	promoter-TSS (NM_001160407)	-319	NM_001160407	116238		NM_138463	ENSG00000160606	TLCD1	-	TLC domain containing 1	protein-coding
39577	chr11	61159601	61160000	+	0	NA	intron (NM_017966, intron 1 of 4)	AluSx1|SINE|Alu	1626	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
115504	chr19	15414421	15414680	+	0	NA	intron (NM_014371, intron 1 of 13)	AluY|SINE|Alu	4438	NM_014371	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
125551	chr2	15590301	15590500	+	0	NA	Intergenic	MIR|SINE|MIR	-1468	NM_004939	1653		NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding
205330	chr7	12555721	12556450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14635	NM_001112706	85477		NM_033128	ENSG00000006747	SCIN	-	scinderin	protein-coding
25457	chr10	6610701	6611130	+	0	NA	Intergenic	LTR50|LTR|ERVL	-7801	NR_120634	101928150		NR_120634		LINC02648	-	long intergenic non-protein coding RNA 2648	ncRNA
38354	chr11	44594401	44594600	+	0	NA	intron (NM_002231, intron 2 of 9)	MIR|SINE|MIR	28837	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
156976	chr22	42478401	42478630	+	0	NA	Intergenic	Intergenic	-22064	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
204891	chr7	6078401	6078800	+	0	NA	Intergenic	AluY|SINE|Alu	-19371	NM_001134335	27102		NM_014413	ENSG00000086232	EIF2AK1	HCR|HRI|LEMSPAD|hHRI	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
122274	chr19	49062201	49062600	+	0	NA	intron (NM_006179, intron 1 of 1)	AluSz|SINE|Alu	1467	NM_006179	4909		NM_006179	ENSG00000225950	NTF4	GLC10|GLC1O|NT-4|NT-4/5|NT-5|NT4|NT5|NTF5	neurotrophin 4	protein-coding
70716	chr14	103339351	103340130	+	0	NA	exon (NM_183004, exon 9 of 11)	exon (NM_183004, exon 9 of 11)	1891	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
69819	chr14	99217321	99217580	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	54747	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
99698	chr17	50841701	50842550	+	0	NA	3' UTR (NM_001330341, exon 2 of 2)	3' UTR (NM_001330341, exon 2 of 2)	6539	NM_175575	124857		NM_175575	ENSG00000173714	WFIKKN2	GASP-1|WFDC20B|WFIKKNRP|hGASP-1	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding
50186	chr12	46153251	46153600	+	0	NA	Intergenic	Intergenic	113091	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
71018	chr14	104760051	104760480	+	0	NA	TTS (NM_021709)	TTS (NM_021709)	7118	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
148472	chr20	64045771	64045930	+	0	NA	Intergenic	Intergenic	3789	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
130391	chr2	85315721	85316500	+	0	NA	Intergenic	Intergenic	11879	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
27178	chr10	28547501	28548100	+	0	NA	intron (NM_100486, intron 3 of 12)	HAL1ME|LINE|L1	14682	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
94260	chr17	28692171	28693300	+	0	NA	intron (NM_003170, intron 27 of 36)	AluY|SINE|Alu	17369	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
98431	chr17	46818371	46819150	+	0	NA	promoter-TSS (NM_030753)	promoter-TSS (NM_030753)	-68	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
238971	chrX	155379951	155380680	+	0	NA	promoter-TSS (NM_001017990)	promoter-TSS (NM_001017990)	-394	NM_001017990	474382		NM_001017990	ENSG00000274183	H2AB1	H2A.B|H2A.B.2|H2A.Bbd|H2AFB1	H2A.B variant histone 1	protein-coding
105087	chr17	82114121	82114780	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-16214	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
144036	chr20	33553171	33553800	+	0	NA	intron (NM_001032999, intron 1 of 10)	AluSz|SINE|Alu	-8880	NM_005093	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
235089	chrX	40245851	40245950	+	0	NA	Intergenic	L2c|LINE|L2	-17017	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
167073	chr3	126991771	126992380	+	0	NA	intron (NM_032242, intron 2 of 30)	intron (NM_032242, intron 2 of 30)	3481	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
17250	chr1	156366571	156367130	+	0	NA	Intergenic	Intergenic	-2361	NM_020407	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
218923	chr8	60827971	60828400	+	0	NA	intron (NM_017780, intron 13 of 37)	intron (NM_017780, intron 13 of 37)	82613	NR_168431	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
227179	chr9	87571451	87571550	+	0	NA	intron (NM_001288730, intron 2 of 25)	(AC)n|Simple_repeat|Simple_repeat	18046	NR_146781	100506897		NR_146781	ENSG00000236709	DAPK1-IT1	-	DAPK1 intronic transcript 1	ncRNA
219233	chr8	66920271	66920630	+	0	NA	3' UTR (NM_173518, exon 15 of 15)	3' UTR (NM_173518, exon 15 of 15)	2099	NR_002598	641648		NR_002598	ENSG00000254341	SNORD87	HBII-276|U87	small nucleolar RNA, C/D box 87	snoRNA
32115	chr10	101221001	101221200	+	0	NA	Intergenic	Intergenic	7860	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
140215	chr2	231716321	231716680	+	0	NA	Intergenic	Intergenic	3186	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
46220	chr11	124069351	124069650	+	0	NA	Intergenic	LTR1|LTR|ERV1	-30499	NM_001004463	390265		NM_001004463	ENSG00000182634	OR10G7	OR11-283	olfactory receptor family 10 subfamily G member 7	protein-coding
222226	chr8	133081671	133082230	+	0	NA	intron (NM_001045556, intron 1 of 8)	LTR84b|LTR|ERVL	20652	NM_001282964	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
181912	chr5	54740521	54740780	+	0	NA	intron (NR_104658, intron 1 of 2)	intron (NR_104658, intron 1 of 2)	3608	NR_104658	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
204397	chr7	3040601	3040800	+	0	NA	intron (NM_001324281, intron 1 of 25)	intron (NM_001324281, intron 1 of 25)	3167	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
134399	chr2	138501201	138502380	+	0	NA	promoter-TSS (NM_001001664)	promoter-TSS (NM_001001664)	20	NM_001001664	339745		NM_001001664	ENSG00000144228	SPOPL	BTBD33	speckle type BTB/POZ protein like	protein-coding
42385	chr11	68869551	68870050	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-27869	NM_001031847	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
44099	chr11	95806021	95806480	+	0	NA	intron (NM_014679, intron 2 of 10)	intron (NM_014679, intron 2 of 10)	15752	NM_014679	9702		NM_014679	ENSG00000166037	CEP57	MVA2|PIG8|TSP57	centrosomal protein 57	protein-coding
62079	chr13	94419301	94419780	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	60142	NM_001922	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
157131	chr22	42791021	42791480	+	0	NA	Intergenic	Intergenic	66023	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
192627	chr6	26123701	26124900	+	0	NA	promoter-TSS (NM_003526)	promoter-TSS (NM_003526)	128	NM_003512	8334		NM_003512	ENSG00000180573	H2AC6	H2A/l|H2AFL|HIST1H2AC|dJ221C16.4	H2A clustered histone 6	protein-coding
184135	chr5	94702871	94703030	+	0	NA	Intergenic	Intergenic	84281	NM_032290	84250		NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding
2708	chr1	10648821	10649080	+	0	NA	intron (NM_017766, intron 15 of 15)	intron (NM_017766, intron 15 of 15)	147696	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
181283	chr5	39424601	39425330	+	0	NA	promoter-TSS (NM_001343)	promoter-TSS (NM_001343)	15	NM_001343	1601		NM_001343	ENSG00000153071	DAB2	DOC-2|DOC2	DAB adaptor protein 2	protein-coding
5177	chr1	24939721	24940130	+	0	NA	intron (NM_001031680, intron 1 of 5)	MIRc|SINE|MIR	-9649	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
165980	chr3	108080801	108081230	+	0	NA	intron (NM_198793, intron 1 of 8)	intron (NM_198793, intron 1 of 8)	10016	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
78673	chr15	95409971	95410330	+	0	NA	Intergenic	Intergenic	-22943	NR_027132	145820		NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
174540	chr4	40199131	40199620	+	0	NA	intron (NM_001278365, intron 2 of 3)	intron (NM_001278365, intron 2 of 3)	2344	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
188982	chr5	163512971	163513130	+	0	NA	intron (NM_182796, intron 2 of 6)	AluJr4|SINE|Alu	7431	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
17770	chr1	159056451	159056950	+	0	NA	Intergenic	MER61-int|LTR|ERV1	20066	NM_004833	9447		NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding
172320	chr4	1652771	1653130	+	0	NA	intron (NM_001297435, intron 4 of 5)	(CA)n|Simple_repeat|Simple_repeat	31041	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
2647	chr1	10426001	10426600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4133	NM_198544	100526739		NM_198544	ENSG00000251503	CENPS-CORT	APITD1|APITD1-CORT|CENP-S|CENPS|FAAP16|MHF1	CENPS-CORT readthrough	protein-coding
147130	chr20	54180151	54180250	+	0	NA	Intergenic	Intergenic	-6214	NM_001128915	1591		NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|HCINF1|P450-CC24	cytochrome P450 family 24 subfamily A member 1	protein-coding
127968	chr2	46700621	46700900	+	0	NA	intron (NM_144949, intron 1 of 1)	intron (NM_144949, intron 1 of 1)	1465	NM_144949	9655		NM_014011	ENSG00000171150	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
179961	chr5	792301	792500	+	0	NA	Intergenic	L1MEc|LINE|L1	-7671	NM_001351303	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
200899	chr6	139103851	139104150	+	0	NA	Intergenic	L1MA4A|LINE|L1	-31080	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
156588	chr22	41531451	41531550	+	0	NA	intron (NM_138338, intron 5 of 6)	intron (NM_138338, intron 5 of 6)	12970	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
12786	chr1	109741571	109741730	+	0	NA	promoter-TSS (NM_000849)	promoter-TSS (NM_000849)	-612	NM_000849	2947		NM_000849	ENSG00000134202	GSTM3	GST5|GSTB|GSTM3-3|GSTM3TV2|GTM3|hGSTM3-3	glutathione S-transferase mu 3	protein-coding
130897	chr2	87442201	87442400	+	0	NA	Intergenic	Intergenic	-13127	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
188213	chr5	150706201	150706800	+	0	NA	Intergenic	L1MCc|LINE|L1	-5438	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
231838	chr9	132667421	132667880	+	0	NA	intron (NM_001322340, intron 1 of 17)	intron (NM_001322340, intron 1 of 17)	2333	NM_001322341	64794		NM_022779	ENSG00000125485	DDX31	PPP1R25	DEAD-box helicase 31	protein-coding
23193	chr1	226986271	226986830	+	0	NA	exon (NM_020247, exon 15 of 15)	exon (NM_020247, exon 15 of 15)	46256	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
75334	chr15	65377721	65378480	+	0	NA	promoter-TSS (NM_004884)	promoter-TSS (NM_004884)	-98	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
109215	chr19	474551	474950	+	0	NA	5' UTR (NM_001385597, exon 1 of 3)	5' UTR (NM_001385597, exon 1 of 3)	233	NM_001385597	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
3048	chr1	12155651	12155750	+	0	NA	Intergenic	Intergenic	-11243	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
130436	chr2	85409971	85411180	+	0	NA	promoter-TSS (NM_001747)	promoter-TSS (NM_001747)	122	NM_001320734	822		NM_001747	ENSG00000042493	CAPG	AFCP|HEL-S-66|MCP	capping actin protein, gelsolin like	protein-coding
183351	chr5	76867971	76868500	+	0	NA	intron (NM_130772, intron 1 of 4)	intron (NM_130772, intron 1 of 4)	18221	NM_130772	170591		NM_130772	ENSG00000171643	S100Z	Gm625|S100-zeta	S100 calcium binding protein Z	protein-coding
86927	chr16	68091651	68092280	+	0	NA	intron (NM_173165, intron 1 of 9)	intron (NM_173165, intron 1 of 9)	6595	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
90601	chr17	1623351	1624380	+	0	NA	intron (NM_152346, intron 2 of 13).2	intron (NM_152346, intron 2 of 13).2	4551	NM_001321365	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
205766	chr7	23523501	23524080	+	0	NA	intron (NM_001362760, intron 1 of 8)	intron (NM_001362760, intron 1 of 8)	8191	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
40999	chr11	65411451	65412180	+	0	NA	3' UTR (NM_001300833, exon 10 of 10)	3' UTR (NM_001300833, exon 10 of 10)	-10983	NR_028272	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
237288	chrX	112851401	112851800	+	0	NA	Intergenic	Intergenic	-10769	NM_133265	154796		NM_133265	ENSG00000126016	AMOT	-	angiomotin	protein-coding
207522	chr7	44807521	44808150	+	0	NA	Intergenic	AluSq2|SINE|Alu	11154	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
9816	chr1	53889201	53890500	+	0	NA	promoter-TSS (NR_036640)	promoter-TSS (NR_036640)	-53	NR_135075	54432		NM_018982	ENSG00000058799	YIPF1	DJ167A19.1|FinGER1|YIPFbeta3A|Yip5a	Yip1 domain family member 1	protein-coding
119803	chr19	41334701	41336050	+	0	NA	intron (NM_000660, intron 5 of 6)	intron (NM_000660, intron 5 of 6)	18547	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
64705	chr14	34049801	34050130	+	0	NA	Intergenic	Intergenic	-98891	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
167346	chr3	128757851	128758530	+	0	NA	intron (NM_004637, intron 1 of 5)	AluJr4|SINE|Alu	32007	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
195917	chr6	41744301	41744700	+	0	NA	exon (NM_002630, exon 3 of 9)	exon (NM_002630, exon 3 of 9)	2897	NM_002630	5225		NM_002630	ENSG00000096088	PGC	PEPC|PGII	progastricsin	protein-coding
32534	chr10	103070501	103070800	+	0	NA	intron (NM_199076, intron 5 of 6)	intron (NM_199076, intron 5 of 6)	83171	NM_001351191	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
179855	chr5	526721	527450	+	0	NA	Intergenic	MER91C|DNA|hAT-Tip100	-2636	NM_004174	6550		NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
148	chr1	527101	527600	+	0	NA	Intergenic	AluYh3|SINE|Alu	-31905	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
6334	chr1	27689851	27690150	+	0	NA	Intergenic	Intergenic	-17808	NM_022872	2537		NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon alpha inducible protein 6	protein-coding
27669	chr10	33087971	33088130	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	28757	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
173008	chr4	4384721	4385300	+	0	NA	Intergenic	Intergenic	-1522	NM_001287763	27065		NM_014392	ENSG00000168824	NSG1	D4S234|D4S234E|NEEP21|P21	neuronal vesicle trafficking associated 1	protein-coding
175732	chr4	77705401	77705600	+	0	NA	Intergenic	LTR33A|LTR|ERVL	99680	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
187833	chr5	146891521	146892230	+	0	NA	intron (NM_001271900, intron 2 of 10)	MER45A|DNA|hAT-Tip100	-12948	NR_073527	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
86715	chr16	67555701	67556900	+	0	NA	Intergenic	Intergenic	6009	NR_158165	107984813		NR_158165	ENSG00000259804	CTCF-DT	-	CTCF divergent transcript	ncRNA
101469	chr17	67469171	67470430	+	0	NA	intron (NM_181671, intron 1 of 9)	L2b|LINE|L2	-1689	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
205798	chr7	24074821	24075150	+	0	NA	Intergenic	Intergenic	-209205	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
231467	chr9	131309071	131309430	+	0	NA	TTS (NM_032728)	TTS (NM_032728)	19527	NM_032728	84814		NM_032728	ENSG00000160539	PLPP7	C9orf67|NET39|PPAPDC3	phospholipid phosphatase 7 (inactive)	protein-coding
13932	chr1	120175151	120175250	+	0	NA	intron (NM_004892, intron 1 of 4)	L2c|LINE|L2	1320	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
127640	chr2	43139501	43141130	+	0	NA	Intergenic	Intergenic	-37870	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
227146	chr9	86297621	86297880	+	0	NA	intron (NM_024617, intron 26 of 26)	L2a|LINE|L2	-15212	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
193893	chr6	31606421	31606680	+	0	NA	Intergenic	Intergenic	-8684	NM_001318970	199		NM_001623	ENSG00000204472	AIF1	AIF-1|IBA1|IRT-1|IRT1	allograft inflammatory factor 1	protein-coding
4133	chr1	19330571	19330930	+	0	NA	intron (NR_109848, intron 9 of 9)	intron (NR_109848, intron 9 of 9)	18424	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
86674	chr16	67489721	67490200	+	0	NA	Intergenic	MIR|SINE|MIR	-6413	NM_001138	181		NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related neuropeptide	protein-coding
233745	chrX	1384651	1385650	+	0	NA	Intergenic	AluSz|SINE|Alu	6963	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
27003	chr10	26820671	26820830	+	0	NA	intron (NR_145410, intron 2 of 11)	AluSg7|SINE|Alu	40208	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
19068	chr1	169928551	169929150	+	0	NA	intron (NM_001375831, intron 19 of 20)	intron (NM_001375831, intron 19 of 20)	-34891	NM_181093	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
16629	chr1	155092701	155093100	+	0	NA	Intergenic	Intergenic	14063	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
232594	chr9	136421351	136421800	+	0	NA	intron (NM_015160, intron 11 of 12)	AluY|SINE|Alu	10917	NM_015160	23203		NM_015160	ENSG00000165688	PMPCA	Alpha-MPP|CLA1|CPD3|INPP5E|MAS2|P-55|SCAR2	peptidase, mitochondrial processing subunit alpha	protein-coding
226756	chr9	76404521	76404780	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	6051	NR_026890	653162		NR_026890		RPSAP9	LAMR1P9|RPSA_20_986	ribosomal protein SA pseudogene 9	pseudo
37791	chr11	32439051	32439550	+	0	NA	TTS (NR_023920)	TTS (NR_023920)	3261	NR_120546	51352		NM_015855	ENSG00000183242	WT1-AS	WIT-1|WIT1|WT1-AS1|WT1AS	WT1 antisense RNA	ncRNA
22200	chr1	212437401	212437600	+	0	NA	intron (NR_026598, intron 1 of 2)	intron (NR_026598, intron 1 of 2)	4580	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
156949	chr22	42342101	42342530	+	0	NA	Intergenic	Intergenic	26893	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
69443	chr14	94172021	94172330	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-2137	NM_020958	57718		NM_020958	ENSG00000119698	PPP4R4	CFAP14|KIAA1622|PP4R4	protein phosphatase 4 regulatory subunit 4	protein-coding
183678	chr5	80653351	80653450	+	0	NA	intron (NM_001290354, intron 1 of 4)	intron (NM_001290354, intron 1 of 4)	-1252	NM_002439	4437		NM_002439	ENSG00000113318	MSH3	DUP|FAP4|MRP1	mutS homolog 3	protein-coding
224454	chr9	15499451	15500200	+	0	NA	intron (NM_001317898, intron 3 of 10)	AluSz|SINE|Alu	10464	NM_021144	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
96369	chr17	40098401	40100000	+	0	NA	intron (NM_021724, intron 1 of 7)	CpG	1389	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
214401	chr7	149792051	149792150	+	0	NA	non-coding (NR_163594, exon 35 of 103)	non-coding (NR_163594, exon 35 of 103)	16058	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
49836	chr12	32365471	32365700	+	0	NA	intron (NM_001354186, intron 9 of 10)	intron (NM_001354186, intron 9 of 10)	-33973	NM_001384126	121512		NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
44127	chr11	96084721	96084980	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-160743	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
79537	chr16	858371	858830	+	0	NA	intron (NR_147885, intron 10 of 11)	CpG	53157	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
94486	chr17	29281321	29281930	+	0	NA	intron (NM_020772, intron 2 of 3)	AluJo|SINE|Alu	12523	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
50208	chr12	46201851	46202200	+	0	NA	intron (NM_001278387, intron 13 of 17)	AluJb|SINE|Alu	64491	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
30403	chr10	78657571	78657930	+	0	NA	Intergenic	Intergenic	390408	NR_073447	414243		NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
103448	chr17	78276221	78276880	+	0	NA	intron (NR_073178, intron 1 of 6)	L1MB3|LINE|L1	1942	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
51393	chr12	51951171	51952880	+	0	NA	intron (NM_020328, intron 1 of 9)	CpG	326	NM_004302	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
142219	chr20	3071771	3072930	+	0	NA	intron (NM_000915, intron 2 of 2)	CpG-17383	730	NM_000915	5020		NM_000915	ENSG00000101405	OXT	OT|OT-NPI|OXT-NPI	oxytocin/neurophysin I prepropeptide	protein-coding
174273	chr4	38176801	38178280	+	0	NA	Intergenic	Intergenic	57586	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
144584	chr20	35786401	35787130	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	14750	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
137318	chr2	196051671	196051900	+	0	NA	intron (NM_018897, intron 2 of 64)	AluY|SINE|Alu	17052	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
135495	chr2	161952501	161953330	+	0	NA	intron (NM_001178016, intron 19 of 26)	Tigger12|DNA|TcMar-Tigger	121300	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
18642	chr1	166878321	166878830	+	0	NA	Intergenic	LTR12|LTR|ERV1	-2311	NM_053053	117143		NM_053053	ENSG00000152382	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
216119	chr8	11292901	11293100	+	0	NA	intron (NM_015458, intron 1 of 9)	Tigger3b|DNA|TcMar-Tigger	8184	NM_015458	66036		NM_015458	ENSG00000104643	MTMR9	C8orf9|LIP-STYX|MTMR8	myotubularin related protein 9	protein-coding
134093	chr2	131673901	131674300	+	0	NA	Intergenic	CpG	-8399	NR_149016	29798		NM_013310	ENSG00000287151	LINC03124	C2orf27|C2orf27A|C2orf27B	long intergenic non-protein coding RNA 3124	ncRNA
63122	chr13	113365921	113366400	+	0	NA	Intergenic	Intergenic	-2012	NM_001286733	79774		NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
209385	chr7	76310851	76311830	+	0	NA	Intergenic	AluSp|SINE|Alu	8667	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
53451	chr12	65232421	65233130	+	0	NA	intron (NM_014319, intron 4 of 12)	intron (NM_014319, intron 4 of 12)	-45908	NM_001193460	253827		NM_198080	ENSG00000174099	MSRB3	DFNB74	methionine sulfoxide reductase B3	protein-coding
186788	chr5	139361721	139362550	+	0	NA	intron (NM_001033112, intron 1 of 3)	intron (NM_001033112, intron 1 of 3)	19701	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
45467	chr11	118567301	118567850	+	0	NA	Intergenic	AluSg|SINE|Alu	-1499	NM_020153	56912		NM_020153	ENSG00000118096	IFT46	C11orf2|C11orf60|CFAP32|FAP32	intraflagellar transport 46	protein-coding
213177	chr7	132443871	132444030	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	132520	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
88566	chr16	85552571	85552830	+	0	NA	Intergenic	Intergenic	-58709	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
169502	chr3	169871301	169871700	+	0	NA	Intergenic	Intergenic	-1565	NM_001277128	79782		NM_024727	ENSG00000114248	LRRC31	HEL-S-293	leucine rich repeat containing 31	protein-coding
172577	chr4	2467971	2469400	+	0	NA	promoter-TSS (NM_002938)	promoter-TSS (NM_002938)	-421	NM_002938	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
37982	chr11	35006351	35007300	+	0	NA	Intergenic	Intergenic	64988	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
36599	chr11	6735371	6735950	+	0	NA	Intergenic	MLT1E1A-int|LTR|ERVL-MaLR	-13781	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
202895	chr6	159996471	159996630	+	0	NA	intron (NM_000876, intron 2 of 47)	L1PA17|LINE|L1	11114	NR_047511	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
75653	chr15	67541351	67542100	+	0	NA	promoter-TSS (NM_002757)	promoter-TSS (NM_002757)	-978	NM_002757	5607		NM_002757	ENSG00000137764	MAP2K5	HsT17454|MAPKK5|MEK5|PRKMK5	mitogen-activated protein kinase kinase 5	protein-coding
127996	chr2	46979571	46980250	+	0	NA	intron (NM_020458, intron 5 of 19)	intron (NM_020458, intron 5 of 19)	-38055	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
81070	chr16	4336221	4336680	+	0	NA	intron (NM_001318918, intron 7 of 7).2	intron (NM_001318918, intron 7 of 7).2	-8110	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
24482	chr1	244242521	244242780	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-109985	NM_001276348	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
71634	chr14	106741071	106741650	+	0	NA	Intergenic	Intergenic	109639	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
90309	chr17	1098151	1098850	+	0	NA	intron (NM_001322840, intron 3 of 22).2	MER112|DNA|hAT-Charlie	10602	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
152443	chr22	20596351	20596850	+	0	NA	Intergenic	AluY|SINE|Alu	88553	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
126261	chr2	27123251	27124400	+	0	NA	promoter-TSS (NM_032604)	promoter-TSS (NM_032604)	10	NM_032604	84696		NM_032604	ENSG00000143994	ABHD1	LABH1	abhydrolase domain containing 1	protein-coding
21049	chr1	203268821	203269680	+	0	NA	Intergenic	Intergenic	-17902	NR_117097	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
25041	chr10	3767601	3768230	+	0	NA	Intergenic	Intergenic	17294	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
56268	chr12	112019971	112020330	+	0	NA	intron (NM_006817, intron 2 of 2)	intron (NM_006817, intron 2 of 2)	6724	NM_006817	10961		NM_006817	ENSG00000089248	ERP29	C12orf8|ERp28|ERp31|HEL-S-107|PDI-DB|PDIA9	endoplasmic reticulum protein 29	protein-coding
111640	chr19	4179771	4180530	+	0	NA	intron (NM_001321061, intron 1 of 5)	AluSx1|SINE|Alu	2156	NM_001321064	51548		NM_016539	ENSG00000077463	SIRT6	SIR2L6|hSIRT6	sirtuin 6	protein-coding
120489	chr19	44757171	44757900	+	0	NA	intron (NM_005178, intron 5 of 8)	CpG-14658	-1122	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
17934	chr1	160302551	160302850	+	0	NA	intron (NM_001098398, intron 17 of 32)	AluY|SINE|Alu	-14565	NR_002190	474338		NR_002190		SUMO1P3	-	SUMO1 pseudogene 3	pseudo
211146	chr7	102549651	102549750	+	0	NA	intron (NM_001097615, intron 4 of 8)	AluSq2|SINE|Alu	-1532	NM_001166339	100310812		NM_001166339	ENSG00000173678	SPDYE2B	SPDYE2L	speedy/RINGO cell cycle regulator family member E2B	protein-coding
226552	chr9	72359201	72359450	+	0	NA	intron (NM_001278243, intron 5 of 6)	intron (NM_001278243, intron 5 of 6)	5231	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
191091	chr6	3750171	3750750	+	0	NA	intron (NM_183373, intron 1 of 4)	intron (NM_183373, intron 1 of 4)	1253	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
203208	chr6	167826301	167827190	+	0	NA	promoter-TSS (NM_001291964)	promoter-TSS (NM_001291964)	51	NR_027906	653483		NM_001042508		AFDN-DT	AFDN-AS1|C6orf124|HGC6.4|MLLT4-AS1|XBP1SBM|dJ431P23.3	AFDN divergent transcript	ncRNA
27361	chr10	30736821	30737080	+	0	NA	Intergenic	Intergenic	13731	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
181859	chr5	53479671	53480250	+	0	NA	promoter-TSS (NM_013409)	promoter-TSS (NM_013409)	-669	NM_013409	10468		NM_006350	ENSG00000134363	FST	FS	follistatin	protein-coding
209559	chr7	77338271	77339230	+	0	NA	intron (NM_001350897, intron 18 of 29)	MLT1A0|LTR|ERVL-MaLR	-76448	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
199438	chr6	117465701	117465900	+	0	NA	Intergenic	Intergenic	-16804	NM_173674	285761		NM_173674	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
139557	chr2	224924871	224925400	+	0	NA	intron (NM_001363762, intron 2 of 55)	intron (NM_001363762, intron 2 of 55)	21914	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
213924	chr7	142603901	142604200	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-62249	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
204379	chr7	2980401	2981330	+	0	NA	intron (NM_001324281, intron 1 of 25)	intron (NM_001324281, intron 1 of 25)	63002	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
158986	chr3	10278351	10278850	+	0	NA	intron (NM_014760, intron 6 of 7)	intron (NM_014760, intron 6 of 7)	-1751	NR_162141	113219470		NR_162141		MIR12127	-	microRNA 12127	ncRNA
114241	chr19	11503171	11503330	+	0	NA	intron (NM_138783, intron 1 of 8)	L2a|LINE|L2	2589	NM_138783	115950		NM_138783	ENSG00000161914	ZNF653	E430039K05Rik|ZIP67	zinc finger protein 653	protein-coding
134377	chr2	136305371	136306080	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-187576	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
67124	chr14	68519871	68520030	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	108837	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
26338	chr10	15188771	15189130	+	0	NA	Intergenic	LTR90B|LTR|LTR	-20257	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
72436	chr15	31510121	31510550	+	0	NA	intron (NM_130901, intron 9 of 13)	intron (NM_130901, intron 9 of 13)	183500	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
48794	chr12	11821951	11822450	+	0	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	172526	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
192452	chr6	24907151	24907400	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	3459	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
36463	chr11	5808421	5809150	+	0	NA	Intergenic	HERVI-int|LTR|ERV1	-11551	NM_001005174	390077		NM_001005174	ENSG00000180988	OR52N2	OR11-57	olfactory receptor family 52 subfamily N member 2	protein-coding
223621	chr8	144321801	144322030	+	0	NA	intron (NM_012079, intron 1 of 16)	intron (NM_012079, intron 1 of 16)	-4600	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
170595	chr3	186929421	186930700	+	0	NA	promoter-TSS (NM_173217)	promoter-TSS (NM_173217)	-466	NM_173217	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
169706	chr3	172104721	172105180	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	64419	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
76030	chr15	72196601	72196850	+	0	NA	intron (NM_001012642, intron 1 of 11)	intron (NM_001012642, intron 1 of 11)	1062	NM_001012642	196996		NM_001012642	ENSG00000175318	GRAMD2A	GRAMD2	GRAM domain containing 2A	protein-coding
151916	chr22	19026101	19026300	+	0	NA	intron (NR_110533, intron 5 of 5)	intron (NR_110533, intron 5 of 5)	3576	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
111996	chr19	4927801	4928000	+	0	NA	intron (NM_013282, intron 1 of 15)	intron (NM_013282, intron 1 of 15)	-4787	NR_039902	100616337		NR_039902	ENSG00000263409	MIR4747	mir-4747	microRNA 4747	ncRNA
37266	chr11	14667351	14667850	+	0	NA	intron (NM_001363569, intron 1 of 15)	L1PA4|LINE|L1	23796	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
113588	chr19	10275971	10276130	+	0	NA	intron (NM_000201, intron 2 of 6)	AluJo|SINE|Alu	4930	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
236981	chrX	101407471	101408830	+	0	NA	promoter-TSS (NM_001032393)	promoter-TSS (NM_001032393)	17	NM_001032393	3188		NM_019597	ENSG00000126945	HNRNPH2	FTP3|HNRPH'|HNRPH2|MRXSB|NRPH2|hnRNPH'	heterogeneous nuclear ribonucleoprotein H2	protein-coding
57231	chr12	121533771	121533930	+	0	NA	intron (NM_001005366, intron 7 of 22)	AluJb|SINE|Alu	46396	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
33984	chr10	124666471	124666830	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-37378	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
146482	chr20	49810771	49811300	+	0	NA	Intergenic	MIR|SINE|MIR	-1678	NM_001260491	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
81825	chr16	11567721	11568130	+	0	NA	intron (NR_024320, intron 1 of 3)	AluSz|SINE|Alu	18448	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
200877	chr6	138946701	138947140	+	0	NA	intron (NM_031922, intron 2 of 19)	THE1D|LTR|ERVL-MaLR	41333	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
130879	chr2	87414371	87414800	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-40842	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
99897	chr17	56834701	56835780	+	0	NA	exon (NM_003647, exon 2 of 12)	exon (NM_003647, exon 2 of 12)	1089	NM_003647	8526		NM_003647	ENSG00000153933	DGKE	AHUS7|DAGK5|DAGK6|DGK|NPHS7	diacylglycerol kinase epsilon	protein-coding
88762	chr16	86664551	86664880	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	57244	NR_135181	101928614		NR_135181	ENSG00000260026	LINC02189	-	long intergenic non-protein coding RNA 2189	ncRNA
148828	chr21	8387851	8388600	+	0	NA	promoter-TSS (NR_106782).3	promoter-TSS (NR_106782).3	-137	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
134520	chr2	143513001	143513400	+	0	NA	intron (NM_018460, intron 9 of 13)	intron (NM_018460, intron 9 of 13)	383781	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
55693	chr12	107684951	107686630	+	0	NA	promoter-TSS (NM_001317963)	promoter-TSS (NM_001317963)	-9	NM_007062	11137		NM_007062	ENSG00000136045	PWP1	IEF-SSP-9502|NCLB	PWP1 homolog, endonuclein	protein-coding
1025	chr1	1868701	1869450	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluY|SINE|Alu	22012	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
14892	chr1	146972701	146972900	+	0	NA	exon (NM_001278141, exon 17 of 37)	exon (NM_001278141, exon 17 of 37)	34255	NM_001278141	149013		NM_001278141	ENSG00000268043	NBPF12	COAS1|KIAA1245	NBPF member 12	protein-coding
83376	chr16	25264751	25264850	+	0	NA	Intergenic	Intergenic	-6955	NM_001012981	342357		NM_001012981	ENSG00000155592	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding
5217	chr1	24983951	24984050	+	0	NA	Intergenic	Intergenic	-18990	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
97638	chr17	44192171	44192330	+	0	NA	TTS (NM_001353174)	TTS (NM_001353174)	5047	NM_001353175	79089		NM_024107	ENSG00000168591	TMUB2	FP2653	transmembrane and ubiquitin like domain containing 2	protein-coding
199867	chr6	127797121	127797780	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	57738	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
14923	chr1	147539601	147540230	+	0	NA	Intergenic	Intergenic	-1586	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
39120	chr11	48107071	48107800	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	10653	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
213199	chr7	132575471	132576830	+	0	NA	intron (NM_181775, intron 2 of 4)	CpG	320	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
12318	chr1	100942301	100942800	+	0	NA	intron (NM_133496, intron 8 of 10)	LTR24C|LTR|ERV1	46460	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
204073	chr7	2051571	2051930	+	0	NA	intron (NM_001304524, intron 10 of 16)	intron (NM_001304524, intron 10 of 16)	37302	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
225584	chr9	36126301	36126700	+	0	NA	Intergenic	Intergenic	-10036	NR_104638	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
205475	chr7	17316271	17316630	+	0	NA	intron (NM_001621, intron 2 of 10)	AluJr|SINE|Alu	17798	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
111968	chr19	4840851	4841850	+	0	NA	intron (NM_005817, intron 7 of 7)	L1MB7|LINE|L1	-9638	NM_001385678	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
172599	chr4	2486151	2486400	+	0	NA	intron (NM_001185009, intron 2 of 8)	intron (NM_001185009, intron 2 of 8)	16822	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
11186	chr1	87403801	87404600	+	0	NA	Intergenic	Intergenic	-32545	NR_038324	100505768		NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
54407	chr12	90075721	90076200	+	0	NA	Intergenic	Intergenic	128267	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
125928	chr2	25130271	25130630	+	0	NA	intron (NM_014971, intron 7 of 22)	intron (NM_014971, intron 7 of 22)	38130	NM_000939	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
12582	chr1	108879521	108879830	+	0	NA	intron (NM_001321038, intron 1 of 14)	AluSg|SINE|Alu	2690	NM_001321038	29899		NM_013296	ENSG00000121957	GPSM2	CMCS|DFNB82|LGN|PINS	G protein signaling modulator 2	protein-coding
73805	chr15	48796871	48797350	+	0	NA	intron (NM_001194998, intron 5 of 26)	intron (NM_001194998, intron 5 of 26)	13959	NM_001194998	22995		NM_014985	ENSG00000103995	CEP152	MCPH4|MCPH9|SCKL5	centrosomal protein 152	protein-coding
73491	chr15	43749431	43750250	+	0	NA	intron (NM_005313, intron 1 of 12)	AluJb|SINE|Alu	3402	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
79771	chr16	1368901	1369500	+	0	NA	intron (NR_163466, intron 2 of 4)	AluSc5|SINE|Alu	10452	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
143103	chr20	23355951	23356450	+	0	NA	TTS (NR_109884)	TTS (NR_109884)	1927	NR_109884	100505683		NR_109884	ENSG00000232645	LINC01431	-	long intergenic non-protein coding RNA 1431	ncRNA
178463	chr4	148239421	148239680	+	0	NA	intron (NR_148974, intron 3 of 6)	intron (NR_148974, intron 3 of 6)	202864	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
71353	chr14	105470251	105470350	+	0	NA	3' UTR (NM_004689, exon 21 of 21)	3' UTR (NM_004689, exon 21 of 21)	-2645	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
167891	chr3	136142321	136142930	+	0	NA	intron (NM_002718, intron 13 of 13)	intron (NM_002718, intron 13 of 13)	51843	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
132340	chr2	105583001	105583200	+	0	NA	Intergenic	Intergenic	27459	NR_038891	285000		NR_038891		LINC02946	RMEL1	long intergenic non-protein coding RNA 2946	ncRNA
213042	chr7	131046821	131048250	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	59495	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
132875	chr2	111134171	111134400	+	0	NA	intron (NM_138625, intron 3 of 4)	L1MD2|LINE|L1	13371	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
180914	chr5	34243821	34245690	+	0	NA	promoter-TSS (NR_146599)	promoter-TSS (NR_146599)	-31	NR_146599	114899		NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and TNF related 3	protein-coding
105251	chr17	82429171	82429530	+	0	NA	intron (NM_001369487, intron 5 of 14)	intron (NM_001369487, intron 5 of 14)	-10764	NM_024648	79701		NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron dependent oxygenase domain containing 3	protein-coding
205562	chr7	20784421	20784830	+	0	NA	exon (NM_182700, exon 2 of 2)	exon (NM_182700, exon 2 of 2)	2261	NM_198956	221833		NM_182700	ENSG00000164651	SP8	BTD	Sp8 transcription factor	protein-coding
10023	chr1	55375671	55375830	+	0	NA	Intergenic	Intergenic	150109	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA
135778	chr2	169730471	169730630	+	0	NA	intron (NR_144936, intron 3 of 4)	AluSg|SINE|Alu	-3282	NM_144711	151230		NM_144711	ENSG00000213160	KLHL23	DITHP	kelch like family member 23	protein-coding
122485	chr19	49560311	49561630	+	0	NA	intron (NM_001270960, intron 1 of 8)	intron (NM_001270960, intron 1 of 8)	19586	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
207726	chr7	48035301	48036300	+	0	NA	intron (NM_001267866, intron 1 of 6)	CpG	257	NM_001267866	136288		NM_001100159	ENSG00000164746	C7orf57	-	chromosome 7 open reading frame 57	protein-coding
110276	chr19	1817621	1818650	+	0	NA	intron (NM_020695, intron 10 of 15)	intron (NM_020695, intron 10 of 15)	-1897	NR_031730	100302210		NR_031730	ENSG00000284216	MIR1909	MIRN1909|hsa-mir-1909|mir-1909	microRNA 1909	ncRNA
35864	chr11	2380601	2381280	+	0	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-2948	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
16321	chr1	154215351	154216000	+	0	NA	intron (NM_015449, intron 1 of 5)	intron (NM_015449, intron 1 of 5)	-4497	NM_001127320	9898		NM_014847	ENSG00000143569	UBAP2L	NEDLBF|NICE-4|NICE4	ubiquitin associated protein 2 like	protein-coding
102574	chr17	75871501	75871900	+	0	NA	Intergenic	AluJb|SINE|Alu	6881	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
196813	chr6	46119521	46120050	+	0	NA	intron (NM_001370650, intron 1 of 6)	L1PA5|LINE|L1	10034	NM_001370650	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
4563	chr1	22051021	22051380	+	0	NA	Intergenic	AluY|SINE|Alu	-1509	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
64133	chr14	22865571	22865830	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-6040	NM_014045	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
175811	chr4	77843651	77843950	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-19030	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
113949	chr19	10758801	10759000	+	0	NA	intron (NM_001005362, intron 1 of 19)	intron (NM_001005362, intron 1 of 19)	-21354	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
96661	chr17	40659771	40660200	+	0	NA	intron (NM_152349, intron 3 of 5)	intron (NM_152349, intron 3 of 5)	5192	NM_152349	125113		NM_152349	ENSG00000213424	KRT222	KA21|KRT222P	keratin 222	protein-coding
41478	chr11	66183601	66184100	+	0	NA	intron (NM_018026, intron 1 of 23)	MER66A|LTR|ERV1	-73444	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
175536	chr4	74543401	74543630	+	0	NA	Intergenic	Intergenic	98379	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
79948	chr16	1763971	1764780	+	0	NA	exon (NM_001040439, exon 18 of 31)	exon (NM_001040439, exon 18 of 31)	7334	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
183800	chr5	82277951	82279230	+	0	NA	promoter-TSS (NM_001025)	promoter-TSS (NM_001025)	-60	NM_001349372	92270		NM_001017971		ATP6AP1L	-	ATPase H+ transporting accessory protein 1 like (pseudogene)	pseudo
122618	chr19	49806571	49806800	+	0	NA	TTS (NM_001352262)	TTS (NM_001352262)	6607	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
145454	chr20	43656671	43658300	+	0	NA	Intergenic	CpG	-9534	NM_001278610	4605		NM_002466	ENSG00000101057	MYBL2	B-MYB|BMYB	MYB proto-oncogene like 2	protein-coding
44621	chr11	108733401	108734080	+	0	NA	intron (NM_004398, intron 13 of 17)	intron (NM_004398, intron 13 of 17)	68671	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
130846	chr2	87255571	87255730	+	0	NA	Intergenic	Intergenic	60864	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
229883	chr9	126502101	126502500	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-91796	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
202526	chr6	158599601	158599800	+	0	NA	intron (NM_001376854, intron 6 of 15)	intron (NM_001376854, intron 6 of 15)	-10007	NR_106981	102465694		NR_106981	ENSG00000278571	MIR7161	hsa-mir-7161	microRNA 7161	ncRNA
146995	chr20	53413021	53413380	+	0	NA	intron (NM_173485, intron 2 of 2)	LTR16C|LTR|ERVL	-139570	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
107774	chr18	51034871	51035230	+	0	NA	intron (NM_005359, intron 1 of 11)	intron (NM_005359, intron 1 of 11)	4837	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
162342	chr3	47787871	47788030	+	0	NA	Intergenic	AluSx3|SINE|Alu	-6057	NM_003074	6599		NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|HYC5|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
210224	chr7	99330521	99331150	+	0	NA	intron (NM_001190996, intron 1 of 9)	intron (NM_001190996, intron 1 of 9)	4937	NM_006409	10552		NM_006409	ENSG00000241685	ARPC1A	Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L	actin related protein 2/3 complex subunit 1A	protein-coding
195610	chr6	37693771	37694530	+	0	NA	intron (NM_153487, intron 1 of 16)	intron (NM_153487, intron 1 of 16)	3733	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
36070	chr11	2982201	2982700	+	0	NA	intron (NM_001369380, intron 1 of 14).2	intron (NM_001369380, intron 1 of 14).2	8653	NM_001369379	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
145040	chr20	38165101	38165630	+	0	NA	promoter-TSS (NM_198951)	promoter-TSS (NM_198951)	-95	NM_001323317	7052		NM_004613	ENSG00000198959	TGM2	G(h)|TG(C)|TGC|hTG2|tTG	transglutaminase 2	protein-coding
81599	chr16	10397701	10397900	+	0	NA	intron (NR_045815, intron 1 of 10)	AluJb|SINE|Alu	11739	NM_001352120	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
53047	chr12	57620671	57621200	+	0	NA	non-coding (NR_120450, exon 1 of 4)	non-coding (NR_120450, exon 1 of 4)	968	NR_120450	101927583		NR_120450		LOC101927583	-	uncharacterized LOC101927583	ncRNA
85591	chr16	53509901	53511080	+	0	NA	Intergenic	Intergenic	-7186	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
60666	chr13	43024901	43025180	+	0	NA	intron (NM_013238, intron 1 of 5)	AluJr4|SINE|Alu	1454	NM_013238	29103		NM_013238	ENSG00000120675	DNAJC15	DNAJD1|HSD18|MCJ	DnaJ heat shock protein family (Hsp40) member C15	protein-coding
24980	chr10	3068001	3069750	+	0	NA	promoter-TSS (NM_001345944)	promoter-TSS (NM_001345944)	248	NM_001323072	5214		NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
155041	chr22	37487971	37488130	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1663	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
78505	chr15	92931301	92932250	+	0	NA	intron (NM_001042572, intron 5 of 12)	L1MC4|LINE|L1	27376	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
198894	chr6	109515521	109516230	+	0	NA	exon (NM_001145128, exon 31 of 41)	exon (NM_001145128, exon 31 of 41)	-32638	NM_001164313	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
47351	chr12	1993771	1994830	+	0	NA	intron (NR_135060, intron 2 of 10)	intron (NR_135060, intron 2 of 10)	10157	NM_152640	196513		NM_152640	ENSG00000151065	DCP1B	DCP1	decapping mRNA 1B	protein-coding
32476	chr10	102659601	102659800	+	0	NA	Intergenic	AluSx1|SINE|Alu	15205	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
222393	chr8	134026851	134026950	+	0	NA	Intergenic	LTR8B|LTR|ERV1	140404	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
165719	chr3	102536501	102536800	+	0	NA	Intergenic	Intergenic	101635	NM_175056	131368		NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida like domain containing 1	protein-coding
101745	chr17	69603001	69603300	+	0	NA	intron (NR_109972, intron 2 of 4)	intron (NR_109972, intron 2 of 4)	9163	NR_109971	101928122		NR_109971	ENSG00000227517	LINC01483	-	long intergenic non-protein coding RNA 1483	ncRNA
37480	chr11	18381101	18381730	+	0	NA	Intergenic	Intergenic	-6372	NR_036116	100423016		NR_036116	ENSG00000264603	MIR3159	-	microRNA 3159	ncRNA
175317	chr4	68321521	68322300	+	0	NA	intron (NM_001031732, intron 11 of 16)	intron (NM_001031732, intron 11 of 16)	28180	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
220095	chr8	94407471	94407630	+	0	NA	exon (NM_001205263, exon 3 of 13)	exon (NM_001205263, exon 3 of 13)	29394	NM_001205263	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
103467	chr17	78339671	78339830	+	0	NA	Intergenic	AluSx|SINE|Alu	19917	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
164522	chr3	63878201	63878830	+	0	NA	intron (NR_165269, intron 3 of 4)	intron (NR_165269, intron 3 of 4)	13981	NM_000333	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
187443	chr5	142110201	142111080	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	1861	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
233469	chr9	137720921	137721750	+	0	NA	intron (NM_024757, intron 3 of 26)	intron (NM_024757, intron 3 of 26)	67071	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
204346	chr7	2864771	2865500	+	0	NA	Intergenic	Intergenic	-20827	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
200658	chr6	137070121	137070580	+	0	NA	Intergenic	L1PA7|LINE|L1	-25170	NM_014432	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
70388	chr14	101946421	101946880	+	0	NA	Intergenic	Intergenic	-17923	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
96879	chr17	42096521	42097100	+	0	NA	intron (NM_001378270, intron 1 of 8)	intron (NM_001378270, intron 1 of 8)	1663	NM_001378270	201181		NM_001013624	ENSG00000187595	ZNF385C	-	zinc finger protein 385C	protein-coding
188778	chr5	157730051	157730530	+	0	NA	Intergenic	AluJr|SINE|Alu	-1130	NM_001317825	54974		NM_017872	ENSG00000113272	THG1L	ICF45|IHG-1|IHG1|SCAR28|THG1|hTHG1	tRNA-histidine guanylyltransferase 1 like	protein-coding
192920	chr6	27685401	27685850	+	0	NA	Intergenic	LTR16|LTR|ERVL	-8410	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
85262	chr16	48536151	48536650	+	0	NA	Intergenic	Intergenic	73780	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
58145	chr12	124916821	124918430	+	0	NA	Intergenic	Intergenic	2078	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
176052	chr4	82420551	82421100	+	0	NA	Intergenic	Intergenic	9400	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
129515	chr2	69648001	69649000	+	0	NA	intron (NM_001320698, intron 1 of 14)	intron (NM_001320698, intron 1 of 14)	4692	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
107673	chr18	49227451	49227830	+	0	NA	intron (NM_001374431, intron 13 of 16)	MamSINE1|SINE|tRNA-RTE	-177872	NR_039898	100616420		NR_039898	ENSG00000263849	MIR4744	-	microRNA 4744	ncRNA
165687	chr3	101924621	101925150	+	0	NA	Intergenic	L1PA7|LINE|L1	-15974	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
227222	chr9	88884371	88884530	+	0	NA	Intergenic	L1PB2|LINE|L1	-106413	NM_001001938	1903		NM_005226	ENSG00000213694	S1PR3	C9orf108|C9orf47|EDG-3|EDG3|LPB3|S1P3|bA791O21.3	sphingosine-1-phosphate receptor 3	protein-coding
1077	chr1	1923551	1924080	+	0	NA	exon (NM_001304360, exon 35 of 39)	exon (NM_001304360, exon 35 of 39)	-4536	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
13430	chr1	114329601	114329800	+	0	NA	Intergenic	Intergenic	-175831	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
199361	chr6	116102851	116103400	+	0	NA	intron (NM_152729, intron 1 of 11)	L2c|LINE|L2	2272	NM_152729	221294		NM_152729	ENSG00000178425	NT5DC1	C6orf200|LP2642|NT5C2L1	5'-nucleotidase domain containing 1	protein-coding
200908	chr6	139131851	139132700	+	0	NA	Intergenic	Intergenic	-2805	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
167397	chr3	128950521	128950780	+	0	NA	intron (NM_001348520, intron 8 of 14)	MER68|LTR|ERVL	41247	NM_001348523	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
20080	chr1	186308651	186309050	+	0	NA	exon (NM_001127709, exon 5 of 11)	exon (NM_001127709, exon 5 of 11)	12571	NM_005807	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
211179	chr7	102591661	102592100	+	0	NA	intron (NM_006989, intron 16 of 20)	AluSx1|SINE|Alu	-19259	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
45294	chr11	118079371	118079780	+	0	NA	intron (NM_001173552, intron 1 of 11)	intron (NM_001173552, intron 1 of 11)	2497	NM_019894	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
79251	chr16	402971	403300	+	0	NA	intron (NM_020664, intron 1 of 8)	AluSx|SINE|Alu	1250	NM_020664	26063		NM_020664	ENSG00000242612	DECR2	PDCR|SDR17C1	2,4-dienoyl-CoA reductase 2	protein-coding
239473	chrY	56732751	56733100	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-221330	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
112245	chr19	5773571	5773930	+	0	NA	intron (NM_152784, intron 20 of 21)	AluJo|SINE|Alu	10996	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
110027	chr19	1452871	1453030	+	0	NA	promoter-TSS (NM_001351273)	promoter-TSS (NM_001351273)	-34	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
31715	chr10	97676621	97677980	+	0	NA	TTS (NM_018425)	TTS (NM_018425)	9941	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
219421	chr8	71810871	71811030	+	0	NA	Intergenic	Intergenic	-32173	NR_033652	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
52088	chr12	54079551	54080050	+	0	NA	intron (NR_026658, intron 2 of 2)	intron (NR_026658, intron 2 of 2)	2023	NR_026658	100240735		NR_026658	ENSG00000291180	LOC100240735	-	uncharacterized LOC100240735	ncRNA
70512	chr14	102302901	102303100	+	0	NA	intron (NR_148552, intron 1 of 9)	AluSz|SINE|Alu	2164	NM_014226	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
31674	chr10	97432271	97432930	+	0	NA	3' UTR (NM_002629, exon 4 of 4)	3' UTR (NM_002629, exon 4 of 4)	4923	NM_001317079	5223		NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
177799	chr4	123397561	123399650	+	0	NA	promoter-TSS (NM_005841)	promoter-TSS (NM_005841)	219	NM_001258039	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
231448	chr9	131266001	131267280	+	0	NA	intron (NM_033387, intron 1 of 1)	intron (NM_033387, intron 1 of 1)	9870	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
238645	chrX	153979971	153980980	+	0	NA	promoter-TSS (NR_036174)	promoter-TSS (NR_036174)	-622	NR_036174	100422987		NR_036174	ENSG00000265176	MIR3202-1	mir-3202-1	microRNA 3202-1	ncRNA
103838	chr17	79555221	79555780	+	0	NA	intron (NM_001350453, intron 1 of 13)	intron (NM_001350453, intron 1 of 13)	-39352	NM_001082575	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
87153	chr16	69312951	69313400	+	0	NA	intron (NM_013245, intron 1 of 10)	AluSx1|SINE|Alu	1825	NM_013245	27183		NM_013245	ENSG00000132612	VPS4A	CIMDAG|SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
10393	chr1	65061701	65061900	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	-3292	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1|mir-101-1	microRNA 101-1	ncRNA
25610	chr10	8066801	8067000	+	0	NA	intron (NM_001002295, intron 4 of 5)	intron (NM_001002295, intron 4 of 5)	12212	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
114823	chr19	13817201	13817400	+	0	NA	exon (NM_001367834, exon 8 of 14)	exon (NM_001367834, exon 8 of 14)	19059	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
183214	chr5	76256251	76256750	+	0	NA	intron (NM_014979, intron 4 of 12)	intron (NM_014979, intron 4 of 12)	-146785	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
144262	chr20	34544401	34544900	+	0	NA	Intergenic	Intergenic	-2194	NM_181509	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
134871	chr2	148728901	148729450	+	0	NA	intron (NM_015630, intron 2 of 13)	L1MC4a|LINE|L1	84424	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
160818	chr3	33043971	33044130	+	0	NA	intron (NM_000404, intron 10 of 15)	L1MEd|LINE|L1	52782	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
113976	chr19	10817221	10817480	+	0	NA	TTS (NR_029586)	TTS (NR_029586)	146	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
16091	chr1	153544421	153546530	+	0	NA	promoter-TSS (NR_125947)	promoter-TSS (NR_125947)	-267	NR_125947	101928034		NR_125947		LOC101928034	-	uncharacterized LOC101928034	ncRNA
225036	chr9	33152701	33153100	+	0	NA	intron (NM_001378495, intron 1 of 5)	L1ME3G|LINE|L1	-14048	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
108991	chr18	79693171	79693330	+	0	NA	intron (NM_001202504, intron 1 of 12)	(GTTTTT)n|Simple_repeat|Simple_repeat	11820	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
122992	chr19	50835751	50836600	+	0	NA	intron (NR_131205, intron 2 of 2)	CpG	-4652	NM_017509	55554		NM_017509	ENSG00000174562	KLK15	ACO|HSRNASPH	kallikrein related peptidase 15	protein-coding
31927	chr10	100529201	100530930	+	0	NA	promoter-TSS (NM_005004)	promoter-TSS (NM_005004)	-142	NM_001284368	4714		NM_005004	ENSG00000166136	NDUFB8	ASHI|CI-ASHI|MC1DN32	NADH:ubiquinone oxidoreductase subunit B8	protein-coding
158578	chr3	4587971	4588130	+	0	NA	intron (NM_002222, intron 4 of 57)	intron (NM_002222, intron 4 of 57)	94702	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
200371	chr6	134177751	134178780	+	0	NA	promoter-TSS (NM_001143677)	promoter-TSS (NM_001143677)	-404	NM_001143677	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
63304	chr13	113990071	113990230	+	0	NA	intron (NM_001320822, intron 22 of 23).2	MSTA|LTR|ERVL-MaLR	-16074	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
110249	chr19	1786271	1786430	+	0	NA	intron (NR_047593, intron 25 of 28)	AluSx|SINE|Alu	25926	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
186972	chr5	139685951	139686250	+	0	NA	Intergenic	Intergenic	10657	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
7129	chr1	32195471	32196530	+	0	NA	3' UTR (NM_001376857, exon 10 of 10)	3' UTR (NM_001376857, exon 10 of 10)	-4595	NM_001301011	79140		NM_024296	ENSG00000160050	CCDC28B	-	coiled-coil domain containing 28B	protein-coding
227197	chr9	87973051	87973480	+	0	NA	intron (NM_012119, intron 2 of 6)	intron (NM_012119, intron 2 of 6)	1268	NM_001170639	23552		NM_012119	ENSG00000156345	CDK20	CCRK|CDCH|P42|PNQALRE	cyclin dependent kinase 20	protein-coding
23016	chr1	226205251	226205750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18164	NM_031944	83881		NM_031944	ENSG00000185155	MIXL1	MILD1|MIX|MIXL	Mix paired-like homeobox	protein-coding
174718	chr4	42649571	42649730	+	0	NA	intron (NM_001105529, intron 1 of 35)	L2a|LINE|L2	7455	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
215356	chr7	157383571	157383900	+	0	NA	intron (NM_005494, intron 6 of 7)	MER33|DNA|hAT-Charlie	46731	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
64880	chr14	35347321	35347800	+	0	NA	Intergenic	LTR33|LTR|ERVL	55178	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
166209	chr3	111988601	111989400	+	0	NA	intron (NR_073570, intron 3 of 3)	intron (NR_073570, intron 3 of 3)	-9739	NM_013259	29114		NM_013259	ENSG00000144834	TAGLN3	NP22|NP24|NP25	transgelin 3	protein-coding
62565	chr13	99960821	99961300	+	0	NA	Intergenic	Intergenic	-3895	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
226635	chr9	74152771	74152930	+	0	NA	Intergenic	L1PA17|LINE|L1	-218681	NR_121182	101927358		NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
39731	chr11	61789851	61790150	+	0	NA	intron (NM_014206, intron 2 of 3)	intron (NM_014206, intron 2 of 3)	2561	NR_030342	693196		NR_030342	ENSG00000284108	MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
127947	chr2	46543901	46544430	+	0	NA	intron (NM_012249, intron 2 of 4)	intron (NM_012249, intron 2 of 4)	-1588	NM_001371283	90423		NM_080653	ENSG00000250565	ATP6V1E2	ATP6E1|ATP6EL2|ATP6V1EL2|VMA4	ATPase H+ transporting V1 subunit E2	protein-coding
175084	chr4	54100671	54102300	+	0	NA	intron (NM_133267, intron 1 of 1)	CpG	1322	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
59766	chr13	30143971	30144900	+	0	NA	Intergenic	Intergenic	8639	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
193071	chr6	28715971	28716130	+	0	NA	Intergenic	AluY|SINE|Alu	-61575	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
208141	chr7	64304451	64304750	+	0	NA	Intergenic	Intergenic	-9273	NM_001294255	728927		NM_001170905	ENSG00000234444	ZNF736	-	zinc finger protein 736	protein-coding
222142	chr8	132547871	132548300	+	0	NA	Intergenic	Intergenic	13394	NR_026684	93668		NR_026684	ENSG00000253521	HPYR1	HPRG1|LINC00027|NCRNA00027	Helicobacter pylori responsive 1	ncRNA
47896	chr12	6745601	6746330	+	0	NA	Intergenic	Intergenic	6951	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
77597	chr15	85258851	85259150	+	0	NA	Intergenic	Intergenic	18649	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
117125	chr19	19224771	19225930	+	0	NA	intron (NM_004386, intron 6 of 14)	intron (NM_004386, intron 6 of 14)	13392	NM_004386	1463		NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
44570	chr11	108230501	108231180	+	0	NA	intron (NM_000051, intron 4 of 62)	AluSz|SINE|Alu	7311	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
62590	chr13	99998571	99998730	+	0	NA	promoter-TSS (NR_047483)	promoter-TSS (NR_047483)	-741	NR_047483	100861542		NR_047483	ENSG00000260738	LINC00554	lncZic2	long intergenic non-protein coding RNA 554	ncRNA
69484	chr14	95473971	95474130	+	0	NA	intron (NM_001384284, intron 2 of 8)	intron (NM_001384284, intron 2 of 8)	26490	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
222099	chr8	130614151	130614330	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-170566	NM_001362925	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
93012	chr17	17210451	17211300	+	0	NA	Intergenic	Intergenic	-4542	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
11208	chr1	88857901	88858300	+	0	NA	intron (NM_001514, intron 5 of 6)	AluSg4|SINE|Alu	33467	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
162193	chr3	47003401	47003600	+	0	NA	intron (NM_001365116, intron 34 of 52)	intron (NM_001365116, intron 34 of 52)	-8042	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
90107	chr16	90075901	90076300	+	0	NA	intron (NM_001098173, intron 1 of 10)	intron (NM_001098173, intron 1 of 10)	1231	NM_001098173	11105		NM_052996	ENSG00000126856	PRDM7	PFM4|ZNF910	PR/SET domain 7	protein-coding
124481	chr19	58556401	58557030	+	0	NA	exon (NM_003969, exon 4 of 6)	exon (NM_003969, exon 4 of 6)	-1610	NM_198426	27243		NM_014453	ENSG00000130724	CHMP2A	BC-2|BC2|CHMP2|VPS2|VPS2A	charged multivesicular body protein 2A	protein-coding
151662	chr22	17084221	17086090	+	0	NA	exon (NM_001289905, exon 1 of 12)	exon (NM_001289905, exon 1 of 12)	155	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
182933	chr5	70779871	70780230	+	0	NA	promoter-TSS (NR_157804).4	promoter-TSS (NR_157804).4	-964	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
197419	chr6	73581721	73581980	+	0	NA	Intergenic	AluSz6|SINE|Alu	-60818	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
194466	chr6	33197271	33198300	+	0	NA	exon (NM_001270401, exon 4 of 10)	exon (NM_001270401, exon 4 of 10)	2880	NM_001270401	6257		NM_021976	ENSG00000204231	RXRB	DAUDI6|H-2RIIBP|NR2B2|RCoR-1|RXR-beta|RXRbeta	retinoid X receptor beta	protein-coding
163573	chr3	51943871	51944330	+	0	NA	exon (NM_005485, exon 3 of 11)	exon (NM_005485, exon 3 of 11)	1737	NM_001370240	10039		NM_005485	ENSG00000041880	PARP3	ADPRT3|ADPRTL2|ADPRTL3|ARTD3|IRT1|PADPRT-3	poly(ADP-ribose) polymerase family member 3	protein-coding
26682	chr10	22626671	22627030	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	87258	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
212546	chr7	128859421	128859880	+	0	NA	TTS (NM_001127487)	TTS (NM_001127487)	2976	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
11161	chr1	87025271	87025430	+	0	NA	intron (NM_001134492, intron 1 of 4)	LTR50|LTR|ERVL	-104415	NR_026988	339524		NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
200244	chr6	132279521	132280100	+	0	NA	Intergenic	Intergenic	121665	NM_015529	26002		NM_015529	ENSG00000079931	MOXD1	MOX|PRO5780|dJ248E1.1	monooxygenase DBH like 1	protein-coding
15169	chr1	149058401	149058800	+	0	NA	intron (NM_001277444, intron 21 of 24)	intron (NM_001277444, intron 21 of 24)	23711	NM_001277444	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
115853	chr19	16538671	16538980	+	0	NA	intron (NM_006387, intron 2 of 16)	intron (NM_006387, intron 2 of 16)	3612	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
40738	chr11	64827201	64827600	+	0	NA	intron (NM_017525, intron 32 of 36)	CpG-4424	-16106	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
41036	chr11	65450601	65450800	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-4586	NR_160548	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
179310	chr4	177401771	177402180	+	0	NA	Intergenic	Intergenic	40462	NM_000027	175		NM_000027	ENSG00000038002	AGA	AGU|ASRG|GA	aspartylglucosaminidase	protein-coding
130942	chr2	87506101	87506330	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	36265	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
214326	chr7	149283021	149283630	+	0	NA	non-coding (NR_144366, exon 7 of 7)	non-coding (NR_144366, exon 7 of 7)	-1956	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
166584	chr3	118901201	118901480	+	0	NA	3' UTR (NM_001353324, exon 7 of 7)	3' UTR (NM_001353324, exon 7 of 7)	-41736	NR_046230	100506765		NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
173146	chr4	6671351	6671850	+	0	NA	intron (NR_134664, intron 1 of 1)	MLT1E2|LTR|ERVL-MaLR	2281	NR_134665	105374366		NR_134664	ENSG00000251580	LINC02482	-	long intergenic non-protein coding RNA 2482	ncRNA
175805	chr4	77816501	77816700	+	0	NA	intron (NM_001365006, intron 1 of 11)	intron (NM_001365006, intron 1 of 11)	2464	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
40569	chr11	64352851	64353150	+	0	NA	intron (NM_032251, intron 20 of 26)	intron (NM_032251, intron 20 of 26)	-6162	NM_001300802	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
23228	chr1	227742951	227743250	+	0	NA	intron (NM_001323931, intron 2 of 5)	intron (NM_001323931, intron 2 of 5)	7405	NM_001323934	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
38704	chr11	46624971	46625130	+	0	NA	intron (NM_001346320, intron 3 of 18)	FLAM_C|SINE|Alu	7497	NM_001346311	9776		NM_014741	ENSG00000175224	ATG13	KIAA0652|PARATARG8	autophagy related 13	protein-coding
69767	chr14	99166271	99166830	+	0	NA	Intergenic	Intergenic	105647	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
82641	chr16	19113621	19115050	+	0	NA	5' UTR (NM_001034841, exon 1 of 1)	5' UTR (NM_001034841, exon 1 of 1)	371	NM_001034841	162073		NM_001034841	ENSG00000205730	ITPRIPL2	D1C	ITPRIP like 2	protein-coding
149047	chr21	15054921	15055180	+	0	NA	intron (NM_003489, intron 1 of 3)	intron (NM_003489, intron 1 of 3)	9950	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
229216	chr9	114897401	114897600	+	0	NA	intron (NM_001252290, intron 4 of 4)	L2b|LINE|L2	33091	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
111725	chr19	4344871	4345430	+	0	NA	intron (NM_032868, intron 2 of 11)	AluSx1|SINE|Alu	1588	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
101402	chr17	67380021	67380450	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSx1|SINE|Alu	2954	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
196764	chr6	45448521	45449180	+	0	NA	intron (NM_001278478, intron 3 of 5)	intron (NM_001278478, intron 3 of 5)	26575	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
11868	chr1	93078401	93079980	+	0	NA	promoter-TSS (NM_001164391)	promoter-TSS (NM_001164391)	-45	NM_001164393	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
199617	chr6	119342271	119342700	+	0	NA	intron (NM_005907, intron 2 of 12)	MIR|SINE|MIR	7276	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
125765	chr2	23390301	23390700	+	0	NA	intron (NM_052920, intron 1 of 13)	intron (NM_052920, intron 1 of 13)	5321	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
228699	chr9	108949921	108950000	+	0	NA	intron (NM_001286974, intron 14 of 18)	AluSz|SINE|Alu	15560	NM_017832	54942		NM_017832	ENSG00000119328	ABITRAM	C9orf6|CG-8|FAM206A|Simiate	actin binding transcription modulator	protein-coding
199789	chr6	126337801	126338000	+	0	NA	Intergenic	L2a|LINE|L2	-1889	NM_001286524	387103		NM_001012507	ENSG00000203760	CENPW	C6orf173|CENP-W|CUG2	centromere protein W	protein-coding
148751	chr21	7760221	7760500	+	0	NA	Intergenic	AluJr|SINE|Alu	10188	NM_001364711	102723451		NM_001364711	ENSG00000277277	LOC102723451	FAM243B	family with sequence similarity 243 member B	protein-coding
12296	chr1	100868401	100868680	+	0	NA	Intergenic	Intergenic	26302	NM_001033025	2135		NM_001439	ENSG00000162694	EXTL2	EXTR2	exostosin like glycosyltransferase 2	protein-coding
122868	chr19	50492001	50492650	+	0	NA	Intergenic	Intergenic	-15477	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
89870	chr16	89639971	89640380	+	0	NA	Intergenic	Intergenic	17533	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
230192	chr9	127802221	127804850	+	0	NA	intron (NM_001018078, intron 1 of 14)	intron (NM_001018078, intron 1 of 14)	354	NM_001018078	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
175661	chr4	76946671	76947230	+	0	NA	Intergenic	LTR33|LTR|ERVL	-2802	NM_018243	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
62462	chr13	99362371	99362800	+	0	NA	intron (NR_026644, intron 7 of 8)	L1ME3Cz|LINE|L1	6454	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
137641	chr2	197391221	197391550	+	0	NA	3' UTR (NM_012433, exon 25 of 25)	3' UTR (NM_012433, exon 25 of 25)	43643	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
172708	chr4	2793501	2794330	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	830	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
96686	chr17	41322391	41323250	+	0	NA	Intergenic	MIRb|SINE|MIR	-7110	NM_031964	83902		NM_031964	ENSG00000186860	KRTAP17-1	KAP17.1|KRTAP16.1|KRTAP17.1	keratin associated protein 17-1	protein-coding
45743	chr11	119146671	119147030	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2202	NM_001348192	64137		NM_022169	ENSG00000172350	ABCG4	WHITE2	ATP binding cassette subfamily G member 4	protein-coding
169569	chr3	170362401	170362800	+	0	NA	intron (NM_001145098, intron 3 of 7)	AluSz|SINE|Alu	2977	NM_001248008	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
120738	chr19	45374121	45374380	+	0	NA	Intergenic	L2a|LINE|L2	-3663	NM_001130867	2068		NM_000400	ENSG00000104884	ERCC2	COFS2|EM9|TFIIH|TTD|TTD1|XPD	ERCC excision repair 2, TFIIH core complex helicase subunit	protein-coding
71514	chr14	106128521	106128830	+	0	NA	Intergenic	Intergenic	-156406	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
196663	chr6	44383921	44384630	+	0	NA	Intergenic	AluJb|SINE|Alu	-3431	NM_001253	988		NM_001253	ENSG00000096401	CDC5L	CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1	cell division cycle 5 like	protein-coding
30672	chr10	80497501	80498030	+	0	NA	intron (NM_001128309, intron 2 of 5)	intron (NM_001128309, intron 2 of 5)	29524	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
209441	chr7	76397271	76398130	+	0	NA	exon (NM_080744, exon 6 of 11)	exon (NM_080744, exon 6 of 11)	178	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
221797	chr8	127975221	127976190	+	0	NA	intron (NR_003367, intron 3 of 8)	intron (NR_003367, intron 3 of 8)	15072	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
100047	chr17	58084601	58085500	+	0	NA	intron (NM_080677, intron 1 of 2)	MIRc|SINE|MIR	1631	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
102225	chr17	75236651	75236950	+	0	NA	3' UTR (NM_001172704, exon 16 of 16)	3' UTR (NM_001172704, exon 16 of 16)	24806	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
230049	chr9	127399921	127400180	+	0	NA	intron (NR_073416, intron 2 of 6)	intron (NR_073416, intron 2 of 6)	2881	NM_014580	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
171924	chr4	865951	866330	+	0	NA	intron (NM_001318134, intron 19 of 24)	intron (NM_001318134, intron 19 of 24)	-40011	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
14429	chr1	144371321	144372580	+	0	NA	TTS (NM_001164262)	TTS (NM_001164262)	1709	NM_001164261	645142		NM_001164261	ENSG00000289549	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding
84474	chr16	30473401	30474450	+	0	NA	intron (NM_002209, intron 1 of 30)	intron (NM_002209, intron 1 of 30)	1183	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
158750	chr3	9354351	9355150	+	0	NA	Intergenic	Intergenic	-8304	NM_015453	25917		NM_015453	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
169680	chr3	172035071	172035880	+	0	NA	Intergenic	L3|LINE|CR1	-4103	NM_022763	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
88996	chr16	87950651	87952300	+	0	NA	promoter-TSS (NM_001384944)	promoter-TSS (NM_001384944)	41	NM_001384935	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
22370	chr1	217696001	217696200	+	0	NA	intron (NM_001375655, intron 5 of 10)	L1PA2|LINE|L1	64756	NM_001375655	128153		NM_138796	ENSG00000162814	SPATA17	CFAP305|FAP305|IQCH|MOT17|MSRG-11|MSRG11	spermatogenesis associated 17	protein-coding
122896	chr19	50551301	50551700	+	0	NA	promoter-TSS (NM_001348568)	promoter-TSS (NM_001348568)	-458	NM_001348568	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
85802	chr16	56965651	56966250	+	0	NA	intron (NM_000078, intron 2 of 15)	intron (NM_000078, intron 2 of 15)	4000	NM_000078	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
79450	chr16	718501	718700	+	0	NA	3' UTR (NM_024042, exon 4 of 4)	3' UTR (NM_024042, exon 4 of 4)	-2546	NM_001271285	65990		NM_023933	ENSG00000103254	ANTKMT	ANT-KMT|C16orf24|FAM173A	adenine nucleotide translocase lysine methyltransferase	protein-coding
1011	chr1	1855671	1856800	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluJr|SINE|Alu	34852	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
58644	chr12	132513621	132514030	+	0	NA	intron (NM_001382740, intron 2 of 11)	intron (NM_001382740, intron 2 of 11)	8419	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171042	chr3	195227101	195227300	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	20720	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
207995	chr7	55476901	55477300	+	0	NA	intron (NM_001321242, intron 4 of 4)	L2b|LINE|L2	49780	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
188550	chr5	156921971	156922700	+	0	NA	intron (NM_001146726, intron 5 of 7)	intron (NM_001146726, intron 5 of 7)	40891	NM_001146726	91937		NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T cell immunoglobulin and mucin domain containing 4	protein-coding
50378	chr12	47223901	47224100	+	0	NA	intron (NM_138371, intron 3 of 3)	intron (NM_138371, intron 3 of 3)	-7557	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
186876	chr5	139515301	139515800	+	0	NA	Intergenic	Intergenic	-32792	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
104843	chr17	81837121	81838650	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2835	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
36969	chr11	11621861	11622300	+	0	NA	promoter-TSS (NM_198516)	promoter-TSS (NM_198516)	-75	NM_001363464	374378		NM_198516	ENSG00000110328	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
27386	chr10	31132821	31133080	+	0	NA	Intergenic	Intergenic	-54933	NR_134478	101929352		NR_134478		LINC02664	-	long intergenic non-protein coding RNA 2664	ncRNA
72078	chr15	28903321	28903980	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	17676	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
165552	chr3	101423851	101423950	+	0	NA	intron (NM_001077203, intron 4 of 22)	L1PA13|LINE|L1	89312	NM_001282802	57337		NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
230343	chr9	128019471	128019630	+	0	NA	Intergenic	AluSx|SINE|Alu	-38561	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
171199	chr3	195704101	195704300	+	0	NA	intron (NR_122105, intron 2 of 4)	L1MC5a|LINE|L1	4799	NR_030296	693155		NR_030296	ENSG00000207650	MIR570	MIRN570|hsa-mir-570	microRNA 570	ncRNA
74854	chr15	63528951	63529380	+	0	NA	non-coding (NR_046341, exon 2 of 16)	non-coding (NR_046341, exon 2 of 16)	24572	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
129386	chr2	68809451	68810050	+	0	NA	intron (NM_001364820, intron 4 of 9)	intron (NM_001364820, intron 4 of 9)	34840	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
217779	chr8	33472601	33473500	+	0	NA	promoter-TSS (NM_032664)	promoter-TSS (NM_032664)	96	NM_032664	84750		NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
232045	chr9	133428121	133429130	+	0	NA	intron (NR_024514, intron 6 of 17)	CpG	6258	NM_139026	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
230227	chr9	127868651	127869050	+	0	NA	TTS (NR_039819)	TTS (NR_039819)	645	NR_039819	100616429		NR_039819	ENSG00000263979	MIR4672	-	microRNA 4672	ncRNA
100229	chr17	59327171	59327330	+	0	NA	Intergenic	Intergenic	-4405	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
4551	chr1	22038301	22038500	+	0	NA	Intergenic	L2c|LINE|L2	-12352	NR_110692	101928043		NR_110692	ENSG00000228397	LINC01635	-	long intergenic non-protein coding RNA 1635	ncRNA
13231	chr1	112674221	112676730	+	0	NA	intron (NM_001369507, intron 1 of 19)	CpG-1448	737	NM_001369507	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
236458	chrX	71571371	71571730	+	0	NA	intron (NM_181672, intron 21 of 21)	AluSz6|SINE|Alu	-6474	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
31175	chr10	91172321	91172580	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	9438	NM_001257101	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
113872	chr19	10664171	10664330	+	0	NA	intron (NM_153464, intron 1 of 17)	AluSx1|SINE|Alu	9904	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
78402	chr15	92005251	92005700	+	0	NA	intron (NM_013272, intron 2 of 9)	LTR105_Mam|LTR|ERVL	151171	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
194498	chr6	33273091	33273750	+	0	NA	intron (NM_022551, intron 2 of 5)	intron (NM_022551, intron 2 of 5)	1345	NM_022551	6222		NM_022551	ENSG00000231500	RPS18	D6S218E|HKE3|KE-3|KE3|S18|uS13	ribosomal protein S18	protein-coding
170407	chr3	185537501	185537730	+	0	NA	intron (NM_139248, intron 1 of 9)	intron (NM_139248, intron 1 of 9)	14973	NM_139248	200879		NM_139248	ENSG00000163898	LIPH	AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1	lipase H	protein-coding
218121	chr8	41535901	41536130	+	0	NA	intron (NR_125824, intron 2 of 2)	intron (NR_125824, intron 2 of 2)	6754	NM_032336	84296		NM_032336	ENSG00000147536	GINS4	SLD5	GINS complex subunit 4	protein-coding
67752	chr14	73715651	73716400	+	0	NA	3' UTR (NM_194278, exon 12 of 12)	3' UTR (NM_194278, exon 12 of 12)	-1641	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
130024	chr2	74290421	74291580	+	0	NA	intron (NM_021196, intron 2 of 25)	intron (NM_021196, intron 2 of 25)	24025	NM_021196	57835		NM_021196	ENSG00000188687	SLC4A5	NBC4|NBCe2	solute carrier family 4 member 5	protein-coding
163240	chr3	50272051	50272230	+	0	NA	promoter-TSS (NR_110697)	promoter-TSS (NR_110697)	-979	NM_001290062	7869		NM_004636	ENSG00000012171	SEMA3B	LUCA-1|SEMA5|SEMAA|SemA|semaV	semaphorin 3B	protein-coding
125839	chr2	24382221	24382750	+	0	NA	Intergenic	Intergenic	-21949	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
97382	chr17	43350251	43350750	+	0	NA	Intergenic	AluY|SINE|Alu	38398	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
238173	chrX	136868271	136869030	+	0	NA	TTS (NM_001164803)	TTS (NM_001164803)	10621	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
227008	chr9	83704951	83706030	+	0	NA	intron (NM_053067, intron 1 of 9)	AluSq2|SINE|Alu	-2345	NR_135839	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
65640	chr14	52316601	52317050	+	0	NA	intron (NM_000956, intron 1 of 1)	intron (NM_000956, intron 1 of 1)	2513	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
101174	chr17	65139421	65139780	+	0	NA	intron (NM_001165933, intron 1 of 16)	intron (NM_001165933, intron 1 of 16)	2230	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
37281	chr11	14696071	14696500	+	0	NA	intron (NM_001363569, intron 1 of 15)	L1PA10|LINE|L1	52481	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
153957	chr22	30353971	30354130	+	0	NA	intron (NM_005877, intron 1 of 15)	intron (NM_005877, intron 1 of 15)	-2574	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
2467	chr1	9654901	9655950	+	0	NA	promoter-TSS (NR_027045)	promoter-TSS (NR_027045)	-839	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
53934	chr12	71758301	71758730	+	0	NA	intron (NM_014999, intron 1 of 6)	AluJo|SINE|Alu	3652	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
70415	chr14	102018101	102019230	+	0	NA	intron (NM_001376, intron 41 of 77)	intron (NM_001376, intron 41 of 77)	54092	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
50667	chr12	48825271	48826030	+	0	NA	intron (NM_001206915, intron 7 of 11)	intron (NM_001206915, intron 7 of 11)	7154	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
63046	chr13	113029321	113029700	+	0	NA	intron (NM_001112732, intron 3 of 29)	intron (NM_001112732, intron 3 of 29)	-15136	NM_001366645	23263		NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
106755	chr18	23580471	23581080	+	0	NA	intron (NM_000271, intron 1 of 24)	intron (NM_000271, intron 1 of 24)	5731	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
97518	chr17	43983451	43984380	+	0	NA	intron (NM_004160, intron 1 of 6)	CpG	20530	NM_004160	5697		NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
87335	chr16	70293921	70294930	+	0	NA	promoter-TSS (NM_001257173)	promoter-TSS (NM_001257173)	-352	NM_001363938	11269		NM_007242	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD-box helicase 19B	protein-coding
149229	chr21	25565551	25566050	+	0	NA	intron (NR_001458, intron 1 of 2)	intron (NR_001458, intron 1 of 2)	3655	NR_001458	114614		NR_001458	ENSG00000234883	MIR155HG	BIC|BIC-155|MIRHG2|NCRNA00172|miPEP155	MIR155 host gene	ncRNA
122437	chr19	49478601	49479100	+	0	NA	intron (NM_001204502, intron 5 of 8)	intron (NM_001204502, intron 5 of 8)	4264	NM_001204503	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
107145	chr18	35153801	35154130	+	0	NA	Intergenic	Intergenic	-87069	NM_032347	84307		NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
30225	chr10	74923621	74923880	+	0	NA	intron (NR_134476, intron 1 of 1)	L2a|LINE|L2	10964	NR_134476								
92729	chr17	14298421	14298840	+	0	NA	Intergenic	CpG	-2451	NR_130138	9953		NM_006041	ENSG00000125430	HS3ST3B1	3-OST-3B|3OST3B1|h3-OST-3B	heparan sulfate-glucosamine 3-sulfotransferase 3B1	protein-coding
148939	chr21	10121371	10121830	+	0	NA	Intergenic	TAR1|Satellite|telo	-291897	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
153607	chr22	27880751	27881150	+	0	NA	intron (NM_001284278, intron 7 of 11)	intron (NM_001284278, intron 7 of 11)	38264	NM_001284278	23760		NM_012399	ENSG00000180957	PITPNB	PI-TP-beta|PtdInsTP|VIB1B	phosphatidylinositol transfer protein beta	protein-coding
95974	chr17	39156801	39157450	+	0	NA	intron (NM_001143968, intron 5 of 5)	L2b|LINE|L2	-5488	NM_020405	57125		NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
201126	chr6	142884701	142885900	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	59876	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
93343	chr17	18215701	18216330	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-9620	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
81747	chr16	11371601	11372050	+	0	NA	TTS (NM_001370704)	TTS (NM_001370704)	26366	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
101620	chr17	68204451	68205800	+	0	NA	Intergenic	CpG	-1004	NM_001346481	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
179163	chr4	169774601	169775100	+	0	NA	Intergenic	CpG	-16906	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
230076	chr9	127450301	127452000	+	0	NA	promoter-TSS (NM_001190723)	promoter-TSS (NM_001190723)	256	NM_000976	6136		NM_000976	ENSG00000197958	RPL12	L12|uL11	ribosomal protein L12	protein-coding
124608	chr2	973721	974800	+	0	NA	intron (NM_018968, intron 1 of 16)	L1MEc|LINE|L1	-22868	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
19564	chr1	179121851	179122100	+	0	NA	intron (NM_001136001, intron 3 of 9)	AluYc3|SINE|Alu	21101	NM_001168239	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
67272	chr14	69155751	69155850	+	0	NA	Intergenic	Intergenic	-2603	NM_001284206	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
135550	chr2	164841051	164841500	+	0	NA	5' UTR (NM_014900, exon 1 of 14)	5' UTR (NM_014900, exon 1 of 14)	157	NM_001278461	22837		NM_014900	ENSG00000082438	COBLL1	COBLR1	cordon-bleu WH2 repeat protein like 1	protein-coding
70632	chr14	102822421	102822900	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	45181	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
14501	chr1	144562121	144562750	+	0	NA	Intergenic	MER41E|LTR|ERV1	-10492	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
121088	chr19	45893821	45894080	+	0	NA	intron (NM_001012643, intron 2 of 2)	AluY|SINE|Alu	-7809	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
35204	chr11	811071	811230	+	0	NA	promoter-TSS (NR_002585)	promoter-TSS (NR_002585)	-531	NR_002585	619565		NR_002585	ENSG00000199785	SNORA52	ACA52	small nucleolar RNA, H/ACA box 52	snoRNA
166036	chr3	108587321	108587580	+	0	NA	intron (NM_020890, intron 1 of 20)	L1ME3|LINE|L1	1988	NM_020890	57650		NM_020890	ENSG00000163507	CIP2A	KIAA1524|NOCIVA|p90	cellular inhibitor of PP2A	protein-coding
20559	chr1	198715021	198715350	+	0	NA	intron (NM_002838, intron 12 of 32)	AluY|SINE|Alu	76145	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
59823	chr13	30419321	30419580	+	0	NA	TTS (NR_125771)	TTS (NR_125771)	2794	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
160668	chr3	32106301	32107530	+	0	NA	intron (NM_015141, intron 1 of 7)	CpG	295	NM_015141	23171		NM_015141	ENSG00000152642	GPD1L	GPD1-L	glycerol-3-phosphate dehydrogenase 1 like	protein-coding
59992	chr13	32414921	32415260	+	0	NA	intron (NR_148480, intron 3 of 8)	MLT1J|LTR|ERVL-MaLR	13040	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
103194	chr17	77461401	77461700	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	7523	NM_001293698	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
128018	chr2	47167451	47168050	+	0	NA	intron (NM_001743, intron 2 of 5)	intron (NM_001743, intron 2 of 5)	6457	NM_001305626	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
120390	chr19	43675201	43675500	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	-5004	NM_001005376	5329		NM_002659	ENSG00000011422	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
68163	chr14	75662671	75663030	+	0	NA	intron (NM_015072, intron 1 of 31)	intron (NM_015072, intron 1 of 31)	1604	NM_015072	23093		NM_015072	ENSG00000119685	TTLL5	CORD19|KIAA0998|STAMP	tubulin tyrosine ligase like 5	protein-coding
124958	chr2	8675921	8676180	+	0	NA	intron (NR_110154, intron 1 of 3)	intron (NR_110154, intron 1 of 3)	5811	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
157933	chr22	49785951	49786400	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	38156	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
12485	chr1	107942371	107942530	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-21993	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
228970	chr9	113519271	113519630	+	0	NA	intron (NM_144488, intron 17 of 25)	intron (NM_144488, intron 17 of 25)	-17161	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
73290	chr15	41868551	41869250	+	0	NA	intron (NM_016642, intron 32 of 67)	intron (NM_016642, intron 32 of 67)	-2349	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
79818	chr16	1418651	1419180	+	0	NA	TTS (NM_001272051)	TTS (NM_001272051)	1832	NM_001272051	283951		NM_001010878	ENSG00000174109	UQCC4	C16orf91|CCSMST1|URLC5|gs103	ubiquinol-cytochrome c reductase complex assembly factor 4	protein-coding
61019	chr13	48151221	48152200	+	0	NA	Intergenic	Intergenic	-56569	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
65011	chr14	38735071	38735230	+	0	NA	Intergenic	Intergenic	-147446	NR_135256	105370457		NR_135256		LOC105370457	-	uncharacterized LOC105370457	ncRNA
111892	chr19	4671621	4671880	+	0	NA	Intergenic	Intergenic	-1408	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
151812	chr22	18236801	18237100	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-31041	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
64406	chr14	24174101	24174300	+	0	NA	intron (NM_001048205, intron 5 of 18).2	AluSx|SINE|Alu	2120	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
146726	chr20	50598071	50598230	+	0	NA	intron (NM_080829, intron 13 of 21)	Charlie8|DNA|hAT-Charlie	12364	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
176117	chr4	83079501	83079700	+	0	NA	Intergenic	L1MCa|LINE|L1	30289	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
7218	chr1	32310871	32311230	+	0	NA	intron (NM_004964, intron 2 of 13)	L2c|LINE|L2	18967	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
203944	chr7	1546271	1547350	+	0	NA	3' UTR (NM_001097620, exon 9 of 9)	3' UTR (NM_001097620, exon 9 of 9)	9395	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
153365	chr22	24437021	24437280	+	0	NA	intron (NM_001278500, intron 2 of 2)	intron (NM_001278500, intron 2 of 2)	5031	NM_001278497	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
238720	chrX	154165451	154165750	+	0	NA	Intergenic	AluSg|SINE|Alu	-16996	NM_000513	2652		NM_000513	ENSG00000268221	OPN1MW	CBBM|CBD|COD5|GCP|GOP|OPN1MW1	opsin 1, medium wave sensitive	protein-coding
104221	chr17	80636721	80637380	+	0	NA	intron (NM_020761, intron 2 of 33)	intron (NM_020761, intron 2 of 33)	92212	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
173179	chr4	6719901	6720750	+	0	NA	Intergenic	Intergenic	4151	NM_018366	55330		NM_018366	ENSG00000186222	BLOC1S4	BCAS4L|BLOS4|CNO	biogenesis of lysosomal organelles complex 1 subunit 4	protein-coding
5271	chr1	25061671	25062100	+	0	NA	Intergenic	MER96|DNA|hAT-Tip100	38382	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
59781	chr13	30169371	30169680	+	0	NA	Intergenic	L1M4|LINE|L1	-16451	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
73265	chr15	41832271	41832430	+	0	NA	intron (NM_005090, intron 1 of 24)	MER52A|LTR|ERV1	4258	NM_001114632	100137047		NM_001114632	ENSG00000243789	JMJD7	-	jumonji domain containing 7	protein-coding
158882	chr3	9891971	9892450	+	0	NA	intron (NM_032492, intron 1 of 1)	AluY|SINE|Alu	1600	NM_001363890	84522		NM_032492	ENSG00000171135	JAGN1	GL009|SCN6	jagunal homolog 1	protein-coding
144424	chr20	35411571	35412730	+	0	NA	promoter-TSS (NM_001184977)	promoter-TSS (NM_001184977)	-8	NM_199487	55245		NM_018244	ENSG00000101019	UQCC1	BFZB|C20orf44|CBP3|UQCC	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding
79111	chr16	203621	203880	+	0	NA	intron (NM_018032, intron 5 of 8)	AluSc8|SINE|Alu	23291	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
212579	chr7	128932751	128933530	+	0	NA	Intergenic	Intergenic	-3892	NM_001347928	3663		NM_032643	ENSG00000128604	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
133242	chr2	113251151	113251900	+	0	NA	intron (NR_015377, intron 2 of 5)	intron (NR_015377, intron 2 of 5)	15256	NR_015377	654433		NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
48243	chr12	8319921	8320930	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	70327	NR_024420	389634		NM_001012988	ENSG00000226091	LINC00937	-	long intergenic non-protein coding RNA 937	ncRNA
40820	chr11	64933521	64934200	+	0	NA	TTS (NM_130769)	TTS (NM_130769)	2033	NM_130769	170589		NM_130769	ENSG00000149735	GPHA2	A2|GPA2|ZSIG51	glycoprotein hormone subunit alpha 2	protein-coding
165635	chr3	101780671	101781280	+	0	NA	intron (NM_001348990, intron 1 of 7)	intron (NM_001348990, intron 1 of 7)	1311	NM_001348998	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
225209	chr9	34137051	34137150	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-10402	NM_015397	25853		NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
18658	chr1	167056651	167057350	+	0	NA	intron (NM_005814, intron 4 of 6)	(GT)n|Simple_repeat|Simple_repeat	33377	NM_005814	10223		NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
86416	chr16	66844601	66845100	+	0	NA	promoter-TSS (NM_001014435)	promoter-TSS (NM_001014435)	-79	NM_001014435	766		NM_005182	ENSG00000168748	CA7	CA-VII|CAVII	carbonic anhydrase 7	protein-coding
198138	chr6	90466251	90466750	+	0	NA	Intergenic	Intergenic	120572	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
67625	chr14	72947871	72948030	+	0	NA	intron (NM_181340, intron 7 of 12)	intron (NM_181340, intron 7 of 12)	21486	NM_001352449	26094		NM_015604	ENSG00000119599	DCAF4	WDR21|WDR21A	DDB1 and CUL4 associated factor 4	protein-coding
119554	chr19	40607321	40608130	+	0	NA	intron (NM_001042544, intron 10 of 32)	intron (NM_001042544, intron 10 of 32)	6356	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
129501	chr2	69627971	69629150	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	15178	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
177508	chr4	118270501	118270900	+	0	NA	Intergenic	Intergenic	-8062	NR_034010	100093630		NR_003584	ENSG00000269893	SNHG8	LINC00060|NCRNA00060	small nucleolar RNA host gene 8	ncRNA
87213	chr16	69455021	69455700	+	0	NA	intron (NM_030579, intron 3 of 4)	intron (NM_030579, intron 3 of 4)	30741	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
84732	chr16	30929901	30930330	+	0	NA	exon (NM_001382780, exon 7 of 11)	exon (NM_001382780, exon 7 of 11)	5540	NM_001099784	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
226719	chr9	75151251	75153050	+	0	NA	Intergenic	Intergenic	63636	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
150257	chr21	41672571	41672730	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6652	NR_024367	54090		NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	ncRNA
15678	chr1	150957001	150957200	+	0	NA	intron (NM_012432, intron 14 of 21)	AluJb|SINE|Alu	17735	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
76541	chr15	75196851	75197350	+	0	NA	Intergenic	AluJo|SINE|Alu	-4782	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
223777	chr8	144567201	144567550	+	0	NA	intron (NM_001308207, intron 4 of 11)	LTR13|LTR|ERVK	-38264	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
57430	chr12	121887271	121887730	+	0	NA	intron (NM_001171993, intron 1 of 15)	AluSz|SINE|Alu	1111	NM_001171993	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
234041	chrX	3879921	3880300	+	0	NA	intron (NR_146581, intron 1 of 3)	THE1A|LTR|ERVL-MaLR	2203	NR_146578	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
156428	chr22	41228801	41229130	+	0	NA	TTS (NM_138481)	TTS (NM_138481)	-11338	NR_148200	100506544		NR_148200		L3MBTL2-AS1	-	L3MBTL2 antisense RNA 1	ncRNA
160940	chr3	36902351	36902650	+	0	NA	intron (NM_014831, intron 2 of 22)	intron (NM_014831, intron 2 of 22)	42554	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
195860	chr6	41529321	41529730	+	0	NA	intron (NR_126415, intron 1 of 1)	intron (NR_126415, intron 1 of 1)	16718	NR_126417	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
37806	chr11	32892271	32894600	+	0	NA	intron (NM_001076786, intron 1 of 12)	CpG	624	NM_001076786	79832		NM_024774	ENSG00000060749	QSER1	-	glutamine and serine rich 1	protein-coding
227464	chr9	91033801	91034080	+	0	NA	Intergenic	Intergenic	41192	NR_033912	100129316		NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
210575	chr7	100359271	100360050	+	0	NA	intron (NR_036570, intron 16 of 16)	intron (NR_036570, intron 16 of 16)	1657	NM_178238	29990		NM_013440	ENSG00000121716	PILRB	FDFACT1|FDFACT2	paired immunoglobin like type 2 receptor beta	protein-coding
203022	chr6	163467021	163467280	+	0	NA	intron (NM_206854, intron 2 of 6)	L1M3|LINE|L1	52432	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
1143	chr1	2163171	2163530	+	0	NA	intron (NR_146911, intron 7 of 15)	intron (NR_146911, intron 7 of 15)	20525	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
60681	chr13	43484451	43484950	+	0	NA	intron (NM_001347965, intron 1 of 15)	intron (NM_001347965, intron 1 of 15)	35848	NR_120399	100874130		NR_120399		ENOX1-AS2	-	ENOX1 antisense RNA 2	ncRNA
64355	chr14	24092701	24092900	+	0	NA	intron (NM_006177, intron 1 of 3).2	MLT1K|LTR|ERVL-MaLR	-1511	NM_001308054	5106		NM_004563	ENSG00000100889	PCK2	PEPCK|PEPCK-M|PEPCK2|mtPCK2	phosphoenolpyruvate carboxykinase 2, mitochondrial	protein-coding
52543	chr12	56132621	56132880	+	0	NA	exon (NM_001184796, exon 10 of 31)	exon (NM_001184796, exon 10 of 31)	4483	NM_015292	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
94785	chr17	31011201	31011530	+	0	NA	intron (NM_001350575, intron 1 of 5)	intron (NM_001350575, intron 1 of 5)	3081	NM_001350579								
82010	chr16	11917901	11918400	+	0	NA	Intergenic	AluY|SINE|Alu	-1496	NM_001130007	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
209712	chr7	86925271	86925430	+	0	NA	intron (NM_001142749, intron 10 of 21)	intron (NM_001142749, intron 10 of 21)	40549	NM_152748	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
71135	chr14	104977071	104977300	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	1189	NM_138420	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
139682	chr2	227321421	227321680	+	0	NA	intron (NR_102371, intron 1 of 13)	LTR12C|LTR|ERV1	3614	NR_102371	654841		NR_102371	ENSG00000236432	MFF-DT	-	MFF divergent transcript	ncRNA
77749	chr15	85751301	85751780	+	0	NA	Intergenic	Intergenic	7185	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
217746	chr8	30742501	30742800	+	0	NA	Intergenic	Intergenic	-1514	NM_005671	7993		NM_005671	ENSG00000104691	UBXN8	D8S2298E|REP8|UBXD6	UBX domain protein 8	protein-coding
9944	chr1	54561821	54562080	+	0	NA	intron (NM_015547, intron 1 of 16)	SVA_F|Retroposon|SVA	13722	NM_015547	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
142256	chr20	3165251	3165550	+	0	NA	intron (NM_001282533, intron 5 of 5)	intron (NM_001282533, intron 5 of 5)	-5535	NM_001267584	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
116650	chr19	18328001	18329030	+	0	NA	Intergenic	Intergenic	-5439	NM_012321	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
159075	chr3	11845371	11845900	+	0	NA	intron (NR_158715, intron 1 of 6)	intron (NR_158715, intron 1 of 6)	1250	NR_135611	132001		NM_138807	ENSG00000144559	TAMM41	C3orf31|COXPD56|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
190322	chr5	179617451	179617550	+	0	NA	intron (NM_001364248, intron 9 of 12).2	intron (NM_001364248, intron 9 of 12).2	5901	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
216156	chr8	11589201	11589830	+	0	NA	Intergenic	Intergenic	12980	NR_040035	83655		NM_054029	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
221542	chr8	124726621	124727890	+	0	NA	intron (NM_001363300, intron 1 of 12)	intron (NM_001363300, intron 1 of 12)	1218	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
56808	chr12	120213471	120213630	+	0	NA	TTS (NR_038924)	TTS (NR_038924)	12259	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
95627	chr17	37683401	37683600	+	0	NA	Intergenic	Intergenic	-40054	NM_007010	11056		NM_007010	ENSG00000278053	DDX52	HUSSY19|ROK1	DExD-box helicase 52	protein-coding
32038	chr10	101033851	101033950	+	0	NA	intron (NM_030971, intron 2 of 11)	LTR5A|LTR|ERVK	2661	NM_030971	81855		NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3|SLC56A3	sideroflexin 3	protein-coding
17047	chr1	156086351	156086600	+	0	NA	intron (NM_001282625, intron 2 of 12)	intron (NM_001282625, intron 2 of 12)	3902	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
72103	chr15	28934651	28934750	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	696	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
196286	chr6	42987151	42987250	+	0	NA	intron (NM_180977, intron 1 of 13)	intron (NM_180977, intron 1 of 13)	2630	NM_001270476	5528		NM_006245	ENSG00000112640	PPP2R5D	B56D|B56delta|HJS1|MRD35	protein phosphatase 2 regulatory subunit B'delta	protein-coding
15367	chr1	150106151	150107150	+	0	NA	intron (NR_103998, intron 12 of 13)	intron (NR_103998, intron 12 of 13)	38874	NR_103998	11311		NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
160696	chr3	32335701	32336280	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	-55863	NM_181472	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
25530	chr10	7376851	7377150	+	0	NA	intron (NM_001029880, intron 2 of 20)	AluSc5|SINE|Alu	32341	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
186849	chr5	139457601	139458050	+	0	NA	intron (NM_001293739, intron 2 of 9)	intron (NM_001293739, intron 2 of 9)	4918	NM_001293739	641700		NM_001077693	ENSG00000249751	ECSCR	ARIA|ECSM2	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding
226687	chr9	75095651	75096150	+	0	NA	intron (NM_012383, intron 1 of 9)	AluY|SINE|Alu	7386	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
98954	chr17	48643771	48644280	+	0	NA	Intergenic	Intergenic	-11466	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
116900	chr19	18768501	18768700	+	0	NA	exon (NM_001098482, exon 11 of 15)	exon (NM_001098482, exon 11 of 15)	22705	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
56101	chr12	110725251	110725550	+	0	NA	intron (NM_002710, intron 3 of 6)	intron (NM_002710, intron 3 of 6)	17491	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
114374	chr19	12496751	12496850	+	0	NA	Intergenic	Intergenic	-11984	NM_152601	163051		NM_152601	ENSG00000242852	ZNF709	-	zinc finger protein 709	protein-coding
161593	chr3	43037951	43038650	+	0	NA	intron (NM_001129908, intron 2 of 4)	intron (NM_001129908, intron 2 of 4)	58989	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
210462	chr7	100130521	100131680	+	0	NA	Intergenic	Intergenic	4133	NM_203397	255374		NM_203397	ENSG00000214309	MBLAC1	-	metallo-beta-lactamase domain containing 1	protein-coding
207482	chr7	44637001	44637230	+	0	NA	intron (NM_001363523, intron 2 of 23)	intron (NM_001363523, intron 2 of 23)	30488	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
103929	chr17	79830571	79830930	+	0	NA	Intergenic	Intergenic	7298	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
233927	chrX	2227951	2228450	+	0	NA	intron (NM_145177, intron 6 of 6)	(GGGA)n|Simple_repeat|Simple_repeat	272339	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
38513	chr11	45888771	45888930	+	0	NA	intron (NM_005456, intron 1 of 11)	AluSx1|SINE|Alu	3199	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
198249	chr6	99419901	99420200	+	0	NA	intron (NM_001322406, intron 1 of 12)	AluY|SINE|Alu	-4821	NR_125843	101927365		NR_125843		PNISR-AS1	-	PNISR antisense RNA 1	ncRNA
149096	chr21	16149951	16150050	+	0	NA	intron (NR_111005, intron 1 of 6)	AluYa5|SINE|Alu	-31398	NR_136551	388815		NR_027790	ENSG00000215386	MIR99AHG	C21orf34|C21orf35|DILA1|LINC00478|MONC	mir-99a-let-7c cluster host gene	ncRNA
214293	chr7	149088801	149089300	+	0	NA	intron (NM_152411, intron 1 of 3)	AluY|SINE|Alu	1668	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
84536	chr16	30531521	30532050	+	0	NA	3' UTR (NM_001305018, exon 3 of 3)	3' UTR (NM_001305018, exon 3 of 3)	3185	NM_001305019	65988		NM_023931	ENSG00000169955	ZNF747	-	zinc finger protein 747	protein-coding
188886	chr5	159773151	159773850	+	0	NA	Intergenic	CpG	97884	NR_109891	101927766		NR_109891	ENSG00000253311	LINC01847	-	long intergenic non-protein coding RNA 1847	ncRNA
191324	chr6	6942951	6943050	+	0	NA	Intergenic	Intergenic	-164743	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
173197	chr4	6785201	6785680	+	0	NA	intron (NM_001100590, intron 1 of 8)	MIRb|SINE|MIR	2708	NM_001100590	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
158707	chr3	8239801	8240050	+	0	NA	intron (NR_033378, intron 3 of 3)	intron (NR_033378, intron 3 of 3)	-223618	NR_110131	101927394		NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
45784	chr11	119310351	119310650	+	0	NA	intron (NM_006500, intron 14 of 15)	intron (NM_006500, intron 14 of 15)	2512	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
220544	chr8	100701781	100703050	+	0	NA	TTS (NM_002568)	TTS (NM_002568)	609	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
116365	chr19	17878871	17879030	+	0	NA	intron (NM_000453, intron 7 of 14)	AluSz|SINE|Alu	7005	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
181816	chr5	52771571	52772330	+	0	NA	Intergenic	Intergenic	-15966	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
212597	chr7	129056101	129056680	+	0	NA	non-coding (NR_002187, exon 1 of 1)	non-coding (NR_002187, exon 1 of 1)	1167	NR_002187	286016		NM_203419	ENSG00000293205	TPI1P2	-	triosephosphate isomerase 1 pseudogene 2	pseudo
144209	chr20	34337921	34338780	+	0	NA	Intergenic	MIRb|SINE|MIR	-24923	NM_001257138	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
209831	chr7	88870251	88870350	+	0	NA	intron (NM_181646, intron 1 of 3)	AluYg6|SINE|Alu	-74563	NM_152706	219557		NM_152706	ENSG00000164645	TEX47	C7orf62|DYBLUF	testis expressed 47	protein-coding
134480	chr2	143257501	143257700	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	128181	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
95730	chr17	38578321	38579100	+	0	NA	exon (NM_025248, exon 2 of 19)	exon (NM_025248, exon 2 of 19)	27242	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
169987	chr3	179565471	179565830	+	0	NA	intron (NM_178042, intron 1 of 13)	intron (NM_178042, intron 1 of 13)	2724	NM_004301	86		NM_004301	ENSG00000136518	ACTL6A	ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K|SMARCN1	actin like 6A	protein-coding
181531	chr5	43064351	43065500	+	0	NA	TTS (NR_034127)	TTS (NR_034127)	2046	NR_034127	100132356		NM_175919		LOC100132356	-	uncharacterized LOC100132356	ncRNA
53250	chr12	62604961	62605830	+	0	NA	Intergenic	Intergenic	1709	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
2331	chr1	9197701	9197900	+	0	NA	Intergenic	Intergenic	-15462	NR_132742	106614088		NR_132742	ENSG00000228526	MIR34AHG	lnc34a	MIR34A host gene	ncRNA
225424	chr9	35066721	35067550	+	0	NA	intron (NM_001354927, intron 3 of 16)	intron (NM_001354927, intron 3 of 16)	5173	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
209516	chr7	76998571	76999260	+	0	NA	intron (NR_023383, intron 2 of 10)	(GT)n|Simple_repeat|Simple_repeat	18093	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
197820	chr6	87737991	87738430	+	0	NA	Intergenic	Intergenic	-35977	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
211464	chr7	105095651	105096250	+	0	NA	intron (NM_182931, intron 15 of 26)	intron (NM_182931, intron 15 of 26)	81745	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
212411	chr7	128166371	128166850	+	0	NA	Intergenic	Intergenic	-41262	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
100096	chr17	58318851	58318950	+	0	NA	intron (NM_001261835, intron 13 of 31)	intron (NM_001261835, intron 13 of 31)	-6550	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
124870	chr2	8303321	8304080	+	0	NA	intron (NR_034135, intron 2 of 8)	intron (NR_034135, intron 2 of 8)	24719	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
143378	chr20	27800201	27800350	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	802390	NR_132315	100289097		NR_132315	ENSG00000282826	FRG1CP	-	FSHD region gene 1 family member C, pseudogene	pseudo
151609	chr22	11825701	11825980	+	0	NA	Intergenic	Intergenic	-71566	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
228858	chr9	112326071	112326430	+	0	NA	intron (NM_001375918, intron 1 of 13)	intron (NM_001375918, intron 1 of 13)	6776	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
124345	chr19	58314001	58316130	+	0	NA	non-coding (NR_144447, exon 7 of 7)	non-coding (NR_144447, exon 7 of 7)	9691	NR_144445	105372481		NM_001396080	ENSG00000142396	ERVK3-1	-	endogenous retrovirus group K3 member 1	protein-coding
236183	chrX	65608301	65608700	+	0	NA	Intergenic	Intergenic	-56079	NR_033742	83957		NM_032033	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
217542	chr8	29311601	29312200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	36905	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
154089	chr22	30942351	30942450	+	0	NA	intron (NM_014941, intron 7 of 26)	L2b|LINE|L2	20092	NR_026920	150291		NM_153044	ENSG00000235989	MORC2-AS1	C22orf27|NCRNA00325	MORC2 antisense RNA 1	ncRNA
30136	chr10	74078201	74078800	+	0	NA	intron (NM_014000, intron 6 of 21)	intron (NM_014000, intron 6 of 21)	72328	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
22895	chr1	225849851	225850880	+	0	NA	intron (NM_014698, intron 20 of 24)	LTR22B1|LTR|ERVK	25011	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
71703	chr15	20303671	20304230	+	0	NA	Intergenic	Intergenic	21206	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
5860	chr1	26736871	26737230	+	0	NA	intron (NM_139135, intron 4 of 19)	intron (NM_139135, intron 4 of 19)	41035	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
22401	chr1	219710921	219711180	+	0	NA	Intergenic	Intergenic	-97905	NM_001355457	643136		NM_001085394	ENSG00000215817	ZC3H11B	ZC3HDC11B	zinc finger CCCH-type containing 11B	protein-coding
72735	chr15	38707821	38708140	+	0	NA	Intergenic	Intergenic	11382	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
50161	chr12	45917121	45917450	+	0	NA	Intergenic	L1ME3G|LINE|L1	73289	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
86175	chr16	57811971	57812300	+	0	NA	intron (NR_169553, intron 1 of 3)	AluYe5|SINE|Alu	1498	NM_001278081	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
221746	chr8	127737131	127738300	+	0	NA	intron (NM_001354870, intron 1 of 2)	CpG	1484	NM_002467	4609		NM_002467	ENSG00000136997	MYC	MRTL|MYCC|bHLHe39|c-Myc	MYC proto-oncogene, bHLH transcription factor	protein-coding
79952	chr16	1766551	1767500	+	0	NA	intron (NM_001318852, intron 25 of 31)	intron (NM_001318852, intron 25 of 31)	4684	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
233174	chr9	137187071	137187230	+	0	NA	intron (NM_013366, intron 2 of 12)	intron (NM_013366, intron 2 of 12)	1410	NM_013366	29882		NM_013366	ENSG00000176248	ANAPC2	APC2	anaphase promoting complex subunit 2	protein-coding
78900	chr15	101124701	101125180	+	0	NA	Intergenic	L1MB7|LINE|L1	127108	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
151959	chr22	19132021	19132280	+	0	NA	non-coding (NR_134304, exon 10 of 10)	non-coding (NR_134304, exon 10 of 10)	842	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
24585	chr1	245612021	245612100	+	0	NA	intron (NM_018012, intron 9 of 14)	(TG)n|Simple_repeat|Simple_repeat	376491	NM_001375965	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
106114	chr18	9177201	9177400	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	39737	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
22860	chr1	225474101	225474300	+	0	NA	Intergenic	AluJo|SINE|Alu	-45345	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
13557	chr1	115647451	115647750	+	0	NA	intron (NM_001172412, intron 1 of 7)	intron (NM_001172412, intron 1 of 7)	4971	NM_001172412	81839		NM_138959	ENSG00000173218	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding
199910	chr6	127870651	127871480	+	0	NA	intron (NM_001164687, intron 1 of 5).2	L1MDa|LINE|L1	-15877	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
81969	chr16	11871451	11871750	+	0	NA	3' UTR (NM_002094, exon 15 of 15)	3' UTR (NM_002094, exon 15 of 15)	-20058	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
85961	chr16	57280101	57280900	+	0	NA	intron (NM_015993, intron 1 of 3)	intron (NM_015993, intron 1 of 3)	4172	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
50868	chr12	49181071	49181430	+	0	NA	Intergenic	AluJr4|SINE|Alu	7830	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
122525	chr19	49624121	49624600	+	0	NA	intron (NM_020719, intron 11 of 13)	intron (NM_020719, intron 11 of 13)	15783	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
166262	chr3	112460621	112461250	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	38537	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
233402	chr9	137564871	137565400	+	0	NA	exon (NM_001346376, exon 7 of 10)	exon (NM_001346376, exon 7 of 10)	13256	NM_032477	64975		NM_032477	ENSG00000182154	MRPL41	BMRP|MRP-L27|MRPL27|PIG3|RPML27|mL41	mitochondrial ribosomal protein L41	protein-coding
150814	chr21	43957851	43957950	+	0	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	32502	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
110894	chr19	2713421	2714080	+	0	NA	TTS (NM_145173)	TTS (NM_145173)	7622	NM_145173	148252		NM_145173	ENSG00000176490	DIRAS1	Di-Ras1|GBTS1|RIG	DIRAS family GTPase 1	protein-coding
100068	chr17	58199951	58200300	+	0	NA	intron (NM_000502, intron 9 of 12)	intron (NM_000502, intron 9 of 12)	7399	NM_000502	8288		NM_000502	ENSG00000121053	EPX	EPO|EPP|EPX-PEN|EPXD	eosinophil peroxidase	protein-coding
143901	chr20	32582121	32582580	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	2983	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
63274	chr13	113960751	113961050	+	0	NA	intron (NM_001365455, intron 6 of 6)	MER101-int|LTR|ERV1	13176	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
62960	chr13	112285251	112285350	+	0	NA	Intergenic	Intergenic	-12300	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
117088	chr19	19139551	19140300	+	0	NA	Intergenic	Intergenic	-1447	NM_001256766	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
125449	chr2	12073651	12074150	+	0	NA	intron (NR_110196, intron 2 of 5)	MIR3|SINE|MIR	66784	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
153650	chr22	28799151	28799450	+	0	NA	intron (NM_005080, intron 1 of 4)	intron (NM_005080, intron 1 of 4)	1272	NM_001079539	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
154383	chr22	35195451	35195550	+	0	NA	intron (NR_126356, intron 1 of 5)	(AT)n|Simple_repeat|Simple_repeat	35556	NR_126356	104310353		NR_126356	ENSG00000293220	LINC01399	-	long intergenic non-protein coding RNA 1399	ncRNA
89395	chr16	88811061	88813180	+	0	NA	promoter-TSS (NM_000485)	promoter-TSS (NM_000485)	-192	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
83723	chr16	28548671	28548830	+	0	NA	Intergenic	Intergenic	-5170	NM_138414	112869		NM_138414	ENSG00000176476	SGF29	CCDC101|STAF36|TDRD29	SAGA complex associated factor 29	protein-coding
82147	chr16	14828121	14828380	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-3548	NR_023387	730013		NR_023387	ENSG00000290943	ABCC6P2	-	ATP binding cassette subfamily C member 6 pseudogene 2	pseudo
91327	chr17	4381221	4381930	+	0	NA	Intergenic	Intergenic	-14901	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
11667	chr1	91818421	91818880	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	67501	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
143651	chr20	31869651	31871200	+	0	NA	promoter-TSS (NR_148011)	promoter-TSS (NR_148011)	-184	NM_001012644	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
170450	chr3	185911751	185912250	+	0	NA	Intergenic	Charlie17b|DNA|hAT-Charlie	26014	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
42418	chr11	69068621	69069230	+	0	NA	intron (NM_139075, intron 8 of 24)	intron (NM_139075, intron 8 of 24)	-14251	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
161020	chr3	37906851	37907150	+	0	NA	intron (NM_005808, intron 1 of 6)	intron (NM_005808, intron 1 of 6)	45120	NM_001008392	10217		NM_005808	ENSG00000144677	CTDSPL	C3orf8|HYA22|PSR1|RBSP3|SCP3	CTD small phosphatase like	protein-coding
62995	chr13	112310821	112311600	+	0	NA	Intergenic	Intergenic	-2257	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
44975	chr11	116894901	116895330	+	0	NA	intron (NM_001281748, intron 7 of 24)	L2a|LINE|L2	-57165	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
122847	chr19	50461171	50461800	+	0	NA	intron (NM_004533, intron 24 of 27)	intron (NM_004533, intron 24 of 27)	-15022	NM_206538	284361		NM_175063	ENSG00000161671	EMC10	C19orf63|HSM1|HSS1|NEDDFAS	ER membrane protein complex subunit 10	protein-coding
153900	chr22	30302351	30303480	+	0	NA	intron (NM_031937, intron 2 of 8)	intron (NM_031937, intron 2 of 8)	-13410	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
206130	chr7	27645301	27645500	+	0	NA	intron (NM_152740, intron 2 of 7)	AluSz|SINE|Alu	17483	NM_152740	11112		NM_152740	ENSG00000106049	HIBADH	NS5ATP1	3-hydroxyisobutyrate dehydrogenase	protein-coding
168574	chr3	148996201	148996600	+	0	NA	exon (NM_004130, exon 3 of 8)	exon (NM_004130, exon 3 of 8)	4860	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
120529	chr19	44893551	44893880	+	0	NA	intron (NM_001128916, intron 4 of 9)	intron (NM_001128916, intron 4 of 9)	2461	NM_001128917	10452		NM_006114	ENSG00000130204	TOMM40	C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40	translocase of outer mitochondrial membrane 40	protein-coding
89360	chr16	88774101	88774530	+	0	NA	intron (NM_001142864, intron 1 of 50)	AluSz6|SINE|Alu	10905	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
9413	chr1	47624651	47624750	+	0	NA	Intergenic	L2c|LINE|L2	186656	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
77967	chr15	89377501	89378180	+	0	NA	promoter-TSS (NR_015411)	promoter-TSS (NR_015411)	-202	NR_015411	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
106636	chr18	22465551	22466460	+	0	NA	Intergenic	Intergenic	-48090	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
198027	chr6	90138721	90139380	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	157793	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
33449	chr10	119040221	119040850	+	0	NA	intron (NM_003750, intron 19 of 21)	L2|LINE|L2	10821	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
7178	chr1	32261871	32262230	+	0	NA	intron (NM_005356, intron 1 of 12)	AluSz|SINE|Alu	10785	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
58683	chr12	132546251	132546550	+	0	NA	intron (NM_001382740, intron 4 of 11)	intron (NM_001382740, intron 4 of 11)	-35597	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
599	chr1	1297201	1297680	+	0	NA	intron (NM_030649, intron 14 of 23)	CpG	-1270	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
5111	chr1	24868801	24869200	+	0	NA	Intergenic	AluSg4|SINE|Alu	50416	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
149068	chr21	15679671	15679930	+	0	NA	Intergenic	L1MC4|LINE|L1	-50134	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
11378	chr1	89653601	89653900	+	0	NA	intron (NM_032270, intron 1 of 2)	L2a|LINE|L2	20630	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
104433	chr17	81079871	81080280	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	-2914	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
223799	chr8	144785501	144786200	+	0	NA	intron (NM_001378028, intron 1 of 6)	L1M5|LINE|L1	1467	NM_001378029	80778		NM_030580	ENSG00000196378	ZNF34	KOX32	zinc finger protein 34	protein-coding
146522	chr20	49922501	49922700	+	0	NA	intron (NR_134564, intron 2 of 2)	SVA_D|Retroposon|SVA	6778	NR_134564	105372653		NR_134564		LOC105372653	-	uncharacterized LOC105372653	ncRNA
105035	chr17	82057121	82057780	+	0	NA	TTS (NM_022156)	TTS (NM_022156)	5552	NM_212492	2873		NM_004127	ENSG00000169727	GPS1	COPS1|CSN1|SGN1	G protein pathway suppressor 1	protein-coding
151731	chr22	17770721	17771130	+	0	NA	intron (NM_001244567, intron 1 of 5)	intron (NM_001244567, intron 1 of 5)	3117	NM_197966	637		NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
83881	chr16	28945301	28946330	+	0	NA	Intergenic	CpG	-5182	NM_032815	84901		NM_032815	ENSG00000176953	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T cells 2 interacting protein	protein-coding
127892	chr2	46202851	46203200	+	0	NA	Intergenic	L2|LINE|L2	-94382	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
113428	chr19	9792501	9794150	+	0	NA	promoter-TSS (NR_148545)	promoter-TSS (NR_148545)	-145	NR_148545	100505555		NR_148545	ENSG00000196605	LOC100505555	-	uncharacterized LOC100505555	ncRNA
141730	chr2	241867201	241867580	+	0	NA	Intergenic	Intergenic	-2339	NM_173821	285093		NM_173821	ENSG00000188011	RTP5	C2orf85|CXXC11|Z3CXXC5	receptor transporter protein 5 (putative)	protein-coding
164995	chr3	71347921	71348680	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-43529	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
3874	chr1	16982351	16982850	+	0	NA	Intergenic	AluSx|SINE|Alu	-1014	NM_001135247	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
40075	chr11	62769501	62770000	+	0	NA	Intergenic	Intergenic	-1646	NM_006473	10629		NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
60389	chr13	40950351	40950950	+	0	NA	intron (NM_001370329, intron 5 of 9)	L2c|LINE|L2	-28876	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
1685	chr1	4328551	4328650	+	0	NA	Intergenic	Intergenic	-83451	NR_027088	284661		NR_027088	ENSG00000235054	LINC01777	-	long intergenic non-protein coding RNA 1777	ncRNA
46421	chr11	126467051	126467350	+	0	NA	intron (NM_001161707, intron 5 of 13)	intron (NM_001161707, intron 5 of 13)	61113	NM_001254759	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
83188	chr16	23492821	23493280	+	0	NA	intron (NM_015044, intron 4 of 16)	intron (NM_015044, intron 4 of 16)	17444	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
90759	chr17	2051801	2052480	+	0	NA	Intergenic	CpG	-1760	NR_029625	406994		NR_029625	ENSG00000267195	MIR212	MIRN212|mir-212	microRNA 212	ncRNA
32255	chr10	101973401	101974350	+	0	NA	intron (NM_024541, intron 20 of 25)	intron (NM_024541, intron 20 of 25)	82298	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
173222	chr4	6907571	6908100	+	0	NA	Intergenic	Intergenic	-1609	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
192771	chr6	26500501	26500700	+	0	NA	intron (NM_001732, intron 1 of 7)	intron (NM_001732, intron 1 of 7)	297	NM_001732	696		NM_001732	ENSG00000124557	BTN1A1	BT|BTN|BTN1	butyrophilin subfamily 1 member A1	protein-coding
29413	chr10	70173821	70174680	+	0	NA	Intergenic	LTR40a|LTR|ERVL	-3736	NM_020150	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
17110	chr1	156152871	156153500	+	0	NA	promoter-TSS (NM_022367)	promoter-TSS (NM_022367)	-393	NM_001193302	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
188507	chr5	154937471	154938780	+	0	NA	promoter-TSS (NM_015465)	promoter-TSS (NM_015465)	86	NM_015465	25929		NM_015465	ENSG00000082516	GEMIN5	GEMIN-5|NEDCAM	gem nuclear organelle associated protein 5	protein-coding
219306	chr8	70073401	70073600	+	0	NA	Intergenic	AluJb|SINE|Alu	-2248	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
98230	chr17	46155601	46156080	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluJo|SINE|Alu	36942	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
94461	chr17	29259201	29260200	+	0	NA	3' UTR (NM_020772, exon 4 of 4)	3' UTR (NM_020772, exon 4 of 4)	12841	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
15877	chr1	151472921	151473580	+	0	NA	Intergenic	Intergenic	-13756	NM_001194938	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
99404	chr17	50001071	50001930	+	0	NA	Intergenic	L2|LINE|L2	-6276	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
8307	chr1	40060401	40060980	+	0	NA	intron (NM_001350483, intron 3 of 12)	intron (NM_001350483, intron 3 of 12)	19664	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
131022	chr2	88037471	88037630	+	0	NA	intron (NM_001304526, intron 1 of 3)	AluJb|SINE|Alu	18233	NM_016618	51315		NM_016618	ENSG00000172086	KRCC1	CHBP2	lysine rich coiled-coil 1	protein-coding
17451	chr1	156691851	156692230	+	0	NA	Intergenic	Intergenic	13543	NM_001878	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
4782	chr1	23556321	23556950	+	0	NA	Intergenic	Intergenic	2866	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
100172	chr17	58628501	58629030	+	0	NA	intron (NM_198393, intron 3 of 32)	AluSg|SINE|Alu	63280	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
60187	chr13	40325571	40325730	+	0	NA	Intergenic	L1MEc|LINE|L1	-105148	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
221779	chr8	127931871	127932030	+	0	NA	intron (NR_003367, intron 2 of 8)	intron (NR_003367, intron 2 of 8)	16773	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
139033	chr2	218465951	218466430	+	0	NA	intron (NM_020935, intron 20 of 25)	intron (NM_020935, intron 20 of 25)	47067	NM_007127	7429		NM_007127	ENSG00000127831	VIL1	D2S1471|VIL	villin 1	protein-coding
165756	chr3	105749421	105749680	+	0	NA	intron (NM_001321811, intron 4 of 16)	intron (NM_001321811, intron 4 of 16)	118041	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
94800	chr17	31216201	31216430	+	0	NA	intron (NM_001042492, intron 13 of 57)	intron (NM_001042492, intron 13 of 57)	80924	NM_002544	4974		NM_002544	ENSG00000126861	OMG	OMGP	oligodendrocyte myelin glycoprotein	protein-coding
90279	chr17	1004971	1006580	+	0	NA	3' UTR (NM_001322841, exon 23 of 23)	3' UTR (NM_001322841, exon 23 of 23)	8646	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
32775	chr10	104345821	104346380	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	7475	NR_108036	100505869		NR_108036	ENSG00000231233	CFAP58-DT	CCDC147-AS1|CFAP58-AS1|lncITPRIP-1	CFAP58 divergent transcript	ncRNA
22529	chr1	222050451	222050750	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-72080	NR_149057	105372950		NR_149057	ENSG00000238042	LINC02257	-	long intergenic non-protein coding RNA 2257	ncRNA
197571	chr6	79702671	79703380	+	0	NA	3' UTR (NM_031469, exon 4 of 4)	3' UTR (NM_031469, exon 4 of 4)	71696	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
48284	chr12	8912601	8913350	+	0	NA	Intergenic	Intergenic	-1534	NM_004426	1911		NM_004426	ENSG00000111752	PHC1	EDR1|HPH1|MCPH11|RAE28	polyhomeotic homolog 1	protein-coding
115289	chr19	14568521	14568950	+	0	NA	intron (NM_004146, intron 1 of 2)	AluJr|SINE|Alu	3331	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
30909	chr10	87080121	87080580	+	0	NA	intron (NM_001318906, intron 1 of 13)	SVA_D|Retroposon|SVA	13737	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
70176	chr14	100329671	100330030	+	0	NA	3' UTR (NM_207117, exon 6 of 6)	3' UTR (NM_207117, exon 6 of 6)	6511	NM_001350877	283600		NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDCMP|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
184187	chr5	95832171	95832330	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-2577	NR_157807	102724720		NR_157807		LOC102724720	-	uncharacterized LOC102724720	ncRNA
32614	chr10	103632201	103633100	+	0	NA	intron (NM_014631, intron 8 of 13)	intron (NM_014631, intron 8 of 13)	45565	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
27718	chr10	33509221	33509480	+	0	NA	Intergenic	Intergenic	-174445	NR_045259	8829		NM_003873	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
101927	chr17	74469501	74470080	+	0	NA	intron (NM_001256841, intron 1 of 5)	AluSq2|SINE|Alu	3156	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
214688	chr7	150976651	150976750	+	0	NA	intron (NM_172056, intron 1 of 8)	MIR3|SINE|MIR	1614	NM_172056	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
57932	chr12	123604201	123604400	+	0	NA	intron (NR_135105, intron 1 of 13)	AluJr|SINE|Alu	2201	NR_135105	57696		NM_020936	ENSG00000111364	DDX55	-	DEAD-box helicase 55	protein-coding
95828	chr17	38798651	38800550	+	0	NA	TTS (NR_073428)	TTS (NR_073428)	305	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
231929	chr9	133113921	133114450	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	7055	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
56607	chr12	118065471	118066050	+	0	NA	3' UTR (NM_019086, exon 9 of 9)	3' UTR (NM_019086, exon 9 of 9)	-3586	NM_001278557	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
170044	chr3	182788421	182788880	+	0	NA	Intergenic	AluY|SINE|Alu	-4854	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
211008	chr7	102327371	102327730	+	0	NA	Intergenic	Intergenic	28894	NM_001146210	729597		NM_001146210	ENSG00000260097	SPDYE6	-	speedy/RINGO cell cycle regulator family member E6	protein-coding
93384	chr17	18256971	18257530	+	0	NA	intron (NM_001256265, intron 1 of 28).2	L2c|LINE|L2	1488	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
67556	chr14	71319651	71322000	+	0	NA	intron (NM_001354288, intron 1 of 23)	CpG	349	NM_015556	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
88581	chr16	85568851	85568950	+	0	NA	Intergenic	Intergenic	-42509	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
124521	chr2	175651	177400	+	0	NA	Intergenic	Intergenic	79815	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
63754	chr14	21239101	21240050	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	29867	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
149172	chr21	17902801	17903480	+	0	NA	Intergenic	Intergenic	-14200	NM_001204176	140578		NM_024944	ENSG00000154645	CHODL	C21orf68|MT75|PRED12	chondrolectin	protein-coding
69949	chr14	99674121	99674580	+	0	NA	intron (NM_001127258, intron 8 of 8)	intron (NM_001127258, intron 8 of 8)	-9948	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
122341	chr19	49208071	49209000	+	0	NA	intron (NM_001321282, intron 19 of 23)	LTR13|LTR|ERVK	50743	NM_001321283	54795		NM_017636	ENSG00000130529	TRPM4	EKVP6|LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
108342	chr18	67242071	67242230	+	0	NA	Intergenic	Intergenic	160566	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
43330	chr11	76442401	76442600	+	0	NA	Intergenic	L2c|LINE|L2	-2518	NM_001300942	56946		NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY transcriptional repressor, BRCA2 interacting	protein-coding
42850	chr11	73185971	73186130	+	0	NA	Intergenic	Intergenic	-32231	NM_002564	5029		NM_002564	ENSG00000175591	P2RY2	HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R	purinergic receptor P2Y2	protein-coding
82349	chr16	15959821	15960080	+	0	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	10334	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
95121	chr17	35003171	35003330	+	0	NA	TTS (NM_002311)	TTS (NM_002311)	22738	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
91129	chr17	3712351	3712450	+	0	NA	Intergenic	Intergenic	-11503	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
214415	chr7	149826971	149827730	+	0	NA	intron (NR_163594, intron 97 of 102)	intron (NR_163594, intron 97 of 102)	-11025	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
215013	chr7	152386301	152386650	+	0	NA	intron (NM_170606, intron 1 of 58)	MLT1J1|LTR|ERVL-MaLR	49528	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
31416	chr10	95688601	95689130	+	0	NA	intron (NM_015631, intron 3 of 13)	intron (NM_015631, intron 3 of 13)	5062	NM_015631	26123		NM_015631	ENSG00000119977	TCTN3	C10orf61|JBTS18|OFD4|TECT3	tectonic family member 3	protein-coding
34009	chr10	124695801	124696100	+	0	NA	intron (NM_014661, intron 3 of 4)	intron (NM_014661, intron 3 of 4)	-8078	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
205509	chr7	18215501	18215730	+	0	NA	intron (NM_001321868, intron 2 of 25)	intron (NM_001321868, intron 2 of 25)	-74477	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
135507	chr2	161996471	161996630	+	0	NA	intron (NR_166824, intron 23 of 25)	intron (NR_166824, intron 23 of 25)	77665	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
228677	chr9	107340301	107340530	+	0	NA	Intergenic	Intergenic	55646	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
71226	chr14	105168221	105169480	+	0	NA	promoter-TSS (NM_145159)	promoter-TSS (NM_145159)	-74	NM_145159	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
198276	chr6	99609971	99610430	+	0	NA	intron (NM_021620, intron 3 of 3)	intron (NM_021620, intron 3 of 3)	3367	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
141366	chr2	240683421	240684080	+	0	NA	promoter-TSS (NM_001102467)	promoter-TSS (NM_001102467)	-865	NM_001102467	653437		NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
109201	chr19	410351	410450	+	0	NA	Intergenic	Intergenic	-1253	NM_001136263	126567		NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium dependent domain containing 4C	protein-coding
12761	chr1	109630121	109631180	+	0	NA	intron (NM_139156, intron 16 of 17)	intron (NM_139156, intron 16 of 17)	6662	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
135886	chr2	171144921	171145480	+	0	NA	intron (NM_001136554, intron 1 of 20)	AluSz|SINE|Alu	15693	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
46509	chr11	128421851	128421950	+	0	NA	Intergenic	L2a|LINE|L2	100410	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
33813	chr10	123254431	123255480	+	0	NA	Intergenic	(CAC)n|Simple_repeat|Simple_repeat	100553	NM_004725	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
34663	chr10	133346451	133346750	+	0	NA	promoter-TSS (NM_001145201)	promoter-TSS (NM_001145201)	-773	NM_001145201	118471		NM_145202	ENSG00000165828	PRAP1	PRO1195|UPA	proline rich acidic protein 1	protein-coding
147252	chr20	57426051	57426150	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-33044	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
212742	chr7	129914001	129914280	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	38820	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
231194	chr9	129930671	129931430	+	0	NA	intron (NM_001363755, intron 6 of 15)	AluJb|SINE|Alu	61445	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
164482	chr3	59995671	59995830	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	85159	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
116957	chr19	18858451	18858550	+	0	NA	intron (NM_001297549, intron 15 of 23)	intron (NM_001297549, intron 15 of 23)	26541	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
108193	chr18	63103601	63104250	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	215844	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
140080	chr2	231445801	231446050	+	0	NA	Intergenic	AluSg|SINE|Alu	10011	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
61340	chr13	50801271	50801630	+	0	NA	intron (NM_198989, intron 1 of 1)	intron (NM_198989, intron 1 of 1)	-6405	NR_046551	100874074		NR_046551	ENSG00000176124	DLEU7-AS1	-	DLEU7 antisense RNA 1	ncRNA
83206	chr16	23561751	23561850	+	0	NA	intron (NM_019116, intron 3 of 6)	intron (NM_019116, intron 3 of 6)	4073	NM_019116	56061		NM_019116	ENSG00000103353	UBFD1	UBPH	ubiquitin family domain containing 1	protein-coding
226980	chr9	81815021	81815280	+	0	NA	Intergenic	Intergenic	-98287	NR_026851	347127		NM_198509	ENSG00000291172	SPATA31D5P	FAM75D5|FAM75D5P	SPATA31 subfamily D member 5, pseudogene	pseudo
150081	chr21	37407051	37407150	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	-11805	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
127725	chr2	43509821	43510080	+	0	NA	intron (NR_144316, intron 22 of 36)	intron (NR_144316, intron 22 of 36)	86024	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
202486	chr6	158284401	158284980	+	0	NA	Intergenic	Intergenic	-27775	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
186439	chr5	136079271	136079530	+	0	NA	Intergenic	CpG	1198	NR_030583	100126299		NR_030583	ENSG00000270123	VTRNA2-1	CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a	vault RNA 2-1	ncRNA
215319	chr7	157348101	157349030	+	0	NA	intron (NM_001363676, intron 1 of 6)	intron (NM_001363676, intron 1 of 6)	11561	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
233620	chrX	383821	384280	+	0	NA	intron (NM_013239, intron 1 of 12)	MER49|LTR|ERV1	2857	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
141398	chr2	240847751	240848180	+	0	NA	Intergenic	Intergenic	-20859	NM_000030	189		NM_000030	ENSG00000172482	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|Ser-PyrAT|TLH6	alanine--glyoxylate aminotransferase	protein-coding
40493	chr11	64258251	64258750	+	0	NA	exon (NM_001184883, exon 9 of 29)	exon (NM_001184883, exon 9 of 29)	6970	NM_001184883	5331		NM_000932	ENSG00000149782	PLCB3	SMDCD	phospholipase C beta 3	protein-coding
116607	chr19	18276311	18277000	+	0	NA	Intergenic	AluY|SINE|Alu	-2203	NM_001145305	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
149404	chr21	31172451	31172950	+	0	NA	intron (NM_001353694, intron 15 of 27)	intron (NM_001353694, intron 15 of 27)	-11760	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
29849	chr10	72349251	72349550	+	0	NA	intron (NR_157570, intron 1 of 8)	intron (NR_157570, intron 1 of 8)	5519	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
133126	chr2	112660271	112661080	+	0	NA	intron (NM_005415, intron 9 of 10)	intron (NM_005415, intron 9 of 10)	14736	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
170922	chr3	194204301	194204500	+	0	NA	intron (NR_125403, intron 2 of 2)	intron (NR_125403, intron 2 of 2)	1907	NR_125404	100505920		NR_125403		LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
137975	chr2	201195871	201196380	+	0	NA	intron (NM_001230, intron 5 of 7)	intron (NM_001230, intron 5 of 7)	12984	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
140201	chr2	231686971	231687630	+	0	NA	Intergenic	Intergenic	-21225	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
136260	chr2	174636721	174637450	+	0	NA	intron (NM_001077269, intron 1 of 7)	L1MC3|LINE|L1	-2480	NM_001375839	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
177621	chr4	121177971	121178130	+	0	NA	intron (NM_001128843, intron 3 of 12)	LTR88c|LTR|Gypsy?	-13729	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
162991	chr3	49720771	49721480	+	0	NA	TTS (NM_013334)	TTS (NM_013334)	-1441	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
129628	chr2	70129301	70129700	+	0	NA	Intergenic	AluY|SINE|Alu	-4184	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
91097	chr17	3656671	3656830	+	0	NA	exon (NM_001374493, exon 8 of 11)	exon (NM_001374493, exon 8 of 11)	11828	NM_014604	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
59465	chr13	26045151	26045650	+	0	NA	3' UTR (NM_001007538, exon 2 of 2)	3' UTR (NM_001007538, exon 2 of 2)	6616	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
201242	chr6	144007721	144008400	+	0	NA	non-coding (NR_002768, exon 1 of 1)	non-coding (NR_002768, exon 1 of 1)	199	NM_001080956	5325		NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
160647	chr3	31568271	31568830	+	0	NA	intron (NM_178862, intron 1 of 15)	L1MA3|LINE|L1	35625	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
79617	chr16	1098271	1098630	+	0	NA	Intergenic	Intergenic	-2206	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
89025	chr16	88333301	88333580	+	0	NA	Intergenic	Intergenic	-49519	NM_001367624	84627		NM_001127464	ENSG00000225614	ZNF469	BCS|BCS1|Zfp469	zinc finger protein 469	protein-coding
47701	chr12	6434121	6435080	+	0	NA	Intergenic	Intergenic	-10355	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
3524	chr1	16068301	16068500	+	0	NA	intron (NM_182623, intron 1 of 6)	intron (NM_182623, intron 1 of 6)	5251	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
109080	chr18	79947521	79948000	+	0	NA	intron (NM_001146343, intron 2 of 3)	intron (NM_001146343, intron 2 of 3)	3893	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
194775	chr6	34145101	34145300	+	0	NA	intron (NM_000841, intron 1 of 10)	CpG	887	NM_000841	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
219581	chr8	79767501	79769500	+	0	NA	promoter-TSS (NM_001040708)	promoter-TSS (NM_001040708)	358	NR_125410	101927067		NR_125410	ENSG00000272138	LINC01607	-	long intergenic non-protein coding RNA 1607	ncRNA
54894	chr12	95862671	95862830	+	0	NA	intron (NM_003095, intron 2 of 3)	L1MB3|LINE|L1	3798	NM_003095	6636		NM_003095	ENSG00000139343	SNRPF	SMF|Sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding
36747	chr11	9313851	9315150	+	0	NA	promoter-TSS (NR_028491)	promoter-TSS (NR_028491)	93	NM_015012	440026		NM_015012	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
131944	chr2	99182421	99182700	+	0	NA	intron (NR_028356, intron 1 of 6)	AluY|SINE|Alu	1376	NM_145212	51263		NM_016503	ENSG00000185414	MRPL30	L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28|uL30m	mitochondrial ribosomal protein L30	protein-coding
18857	chr1	167753071	167753230	+	0	NA	intron (NM_001146191, intron 1 of 2)	intron (NM_001146191, intron 1 of 2)	31168	NM_024569	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
171177	chr3	195659301	195660000	+	0	NA	intron (NR_003265, intron 1 of 14)	intron (NR_003265, intron 1 of 14)	1611	NR_003265	727956		NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	SDHA pseudogene 2	pseudo
189195	chr5	171423721	171424330	+	0	NA	intron (NM_003862, intron 2 of 4)	AluSx|SINE|Alu	4378	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
125476	chr2	12430771	12431280	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	231895	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
53770	chr12	68750521	68750780	+	0	NA	intron (NR_149144, intron 2 of 4)	intron (NR_149144, intron 2 of 4)	4474	NM_018656	55508		NM_018656	ENSG00000175782	SLC35E3	BLOV1	solute carrier family 35 member E3	protein-coding
5043	chr1	24533551	24534180	+	0	NA	intron (NM_001251980, intron 3 of 3)	intron (NM_001251980, intron 3 of 3)	19551	NM_001251982	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
208943	chr7	74171201	74171600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2956	NM_031992	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
59490	chr13	26496471	26497180	+	0	NA	Intergenic	Intergenic	-60858	NM_006646	10810		NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	WASP family member 3	protein-coding
52584	chr12	56179671	56179830	+	0	NA	intron (NM_003075, intron 11 of 27)	AluSc8|SINE|Alu	9733	NM_001130420	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
150200	chr21	39363751	39363850	+	0	NA	Intergenic	Intergenic	-14712	NM_004965	3150		NM_004965	ENSG00000205581	HMGN1	HMG14	high mobility group nucleosome binding domain 1	protein-coding
217797	chr8	33556101	33556300	+	0	NA	intron (NM_024787, intron 2 of 5)	AluJb|SINE|Alu	10928	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
139339	chr2	219572401	219572600	+	0	NA	promoter-TSS (NM_001173408)	promoter-TSS (NM_001173408)	190	NM_002191	3623		NM_002191	ENSG00000123999	INHA	-	inhibin subunit alpha	protein-coding
209337	chr7	76236301	76236750	+	0	NA	intron (NM_001291831, intron 2 of 15)	intron (NM_001291831, intron 2 of 15)	34629	NM_001110199	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
100404	chr17	60394221	60394680	+	0	NA	Intergenic	Intergenic	-2317	NM_032582	84669		NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding
156872	chr22	42087601	42088080	+	0	NA	intron (NM_002490, intron 1 of 2).2	AluSx1|SINE|Alu	2932	NM_002490	4700		NM_002490	ENSG00000184983	NDUFA6	B14|CI-B14|LYRM6|MC1DN33|NADHB14	NADH:ubiquinone oxidoreductase subunit A6	protein-coding
157678	chr22	46289201	46290100	+	0	NA	intron (NM_017931, intron 12 of 13)	CpG	7010	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
209012	chr7	74291421	74291850	+	0	NA	intron (NM_032421, intron 1 of 15)	intron (NM_032421, intron 1 of 15)	2228	NM_003388	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
32880	chr10	110142051	110142400	+	0	NA	Intergenic	Intergenic	9755	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
182857	chr5	69639301	69639500	+	0	NA	TTS (NR_027386)	TTS (NR_027386)	8255	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
34565	chr10	133185851	133185950	+	0	NA	intron (NM_152643, intron 5 of 29)	(GGGAG)n|Simple_repeat|Simple_repeat	25681	NM_152643	85442		NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND	kinase non-catalytic C-lobe domain containing 1	protein-coding
236963	chrX	101348221	101349180	+	0	NA	promoter-TSS (NM_004085)	promoter-TSS (NM_004085)	42	NM_001145951	1678		NM_004085	ENSG00000126953	TIMM8A	DDP|DDP1|DFN1|MTS|TIM8	translocase of inner mitochondrial membrane 8A	protein-coding
203722	chr7	1086751	1087400	+	0	NA	promoter-TSS (NM_001505)	promoter-TSS (NM_001505)	-43	NM_001505	2852		NM_001505	ENSG00000164850	GPER1	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER	G protein-coupled estrogen receptor 1	protein-coding
68994	chr14	91484851	91485450	+	0	NA	intron (NR_158976, intron 4 of 16)	L2|LINE|L2	25160	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
140919	chr2	237711351	237712680	+	0	NA	intron (NM_001137551, intron 2 of 11)	intron (NM_001137551, intron 2 of 11)	19810	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
43431	chr11	77634501	77635050	+	0	NA	intron (NM_001311199, intron 1 of 6)	intron (NM_001311199, intron 1 of 6)	3019	NM_001311200	1207		NM_001293	ENSG00000074201	CLNS1A	CLCI|CLNS1B|ICln	chloride nucleotide-sensitive channel 1A	protein-coding
1232	chr1	2281021	2281430	+	0	NA	intron (NM_003036, intron 1 of 6)	CpG	52906	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
237827	chrX	129988821	129989430	+	0	NA	intron (NM_001379450, intron 1 of 13)	MIRb|SINE|MIR	6490	NM_021946	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
115937	chr19	16647451	16647750	+	0	NA	intron (NM_024104, intron 4 of 4)	AluSx1|SINE|Alu	12544	NM_001300925	79086		NM_024104	ENSG00000214046	SMIM7	C19orf42	small integral membrane protein 7	protein-coding
107829	chr18	54220521	54220780	+	0	NA	intron (NM_003927, intron 1 of 6)	intron (NM_003927, intron 1 of 6)	1762	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
37876	chr11	33891451	33892150	+	0	NA	5' UTR (NM_005574, exon 1 of 6)	5' UTR (NM_005574, exon 1 of 6)	276	NM_005574	4005		NM_005574	ENSG00000135363	LMO2	LMO-2|RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
213405	chr7	137656351	137656530	+	0	NA	intron (NM_001321708, intron 4 of 32)	intron (NM_001321708, intron 4 of 32)	189892	NM_001321709	9162		NM_004717	ENSG00000157680	DGKI	DGK-IOTA	diacylglycerol kinase iota	protein-coding
158444	chr22	50609121	50609700	+	0	NA	intron (NM_012324, intron 10 of 11)	MIR|SINE|MIR	8617	NM_012324	23542		NM_012324	ENSG00000008735	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
108240	chr18	63212801	63214200	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	106269	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
234741	chrX	22004921	22005180	+	0	NA	Intergenic	L1P2|LINE|L1	-27275	NM_001282754	5251		NM_000444	ENSG00000102174	PHEX	HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH	phosphate regulating endopeptidase X-linked	protein-coding
223077	chr8	143404901	143405300	+	0	NA	Intergenic	Intergenic	-12579	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
166113	chr3	111073571	111073930	+	0	NA	intron (NM_001243288, intron 1 of 8)	intron (NM_001243288, intron 1 of 8)	1934	NM_001243288	25945		NM_015480	ENSG00000177707	NECTIN3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3	nectin cell adhesion molecule 3	protein-coding
9266	chr1	46300001	46300400	+	0	NA	intron (NM_006369, intron 1 of 9)	AluJo|SINE|Alu	3416	NM_006369	10489		NM_006369	ENSG00000132128	LRRC41	MUF1|PP7759	leucine rich repeat containing 41	protein-coding
15608	chr1	150609451	150609750	+	0	NA	Intergenic	Intergenic	19533	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
34590	chr10	133254821	133255530	+	0	NA	Intergenic	Intergenic	-7290	NR_108079	101927671		NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
226019	chr9	41663651	41663950	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	16126	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
185459	chr5	131271001	131271200	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	7047	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
149592	chr21	33292821	33293080	+	0	NA	intron (NM_000628, intron 6 of 6)	ERV3-16A3_I-int|LTR|ERVL	26583	NM_000628	3588		NM_000628	ENSG00000243646	IL10RB	CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IBD25|IL-10R2|IL-10RB	interleukin 10 receptor subunit beta	protein-coding
123274	chr19	53519401	53519880	+	0	NA	Intergenic	LTR46|LTR|ERV1	-1374	NM_018555	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
55990	chr12	110287951	110288550	+	0	NA	intron (NM_170665, intron 3 of 19)	AluJr4|SINE|Alu	7003	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
56171	chr12	111413921	111414330	+	0	NA	intron (NM_005475, intron 1 of 7)	intron (NM_005475, intron 1 of 7)	8202	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
14620	chr1	145450451	145450550	+	0	NA	Intergenic	Intergenic	-44722	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
80165	chr16	2110821	2111280	+	0	NA	exon (NM_000296, exon 15 of 46)	exon (NM_000296, exon 15 of 46)	-4297	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
197191	chr6	63582571	63583200	+	0	NA	non-coding (NR_169593, exon 6 of 6)	non-coding (NR_169593, exon 6 of 6)	10405	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
38254	chr11	36541101	36541480	+	0	NA	intron (NM_001377277, intron 3 of 4)	intron (NM_001377277, intron 3 of 4)	-26717	NM_000448	5896		NM_000448	ENSG00000166349	RAG1	RAG-1|RNF74	recombination activating 1	protein-coding
94395	chr17	28965401	28966000	+	0	NA	intron (NM_178860, intron 4 of 16)	intron (NM_178860, intron 4 of 16)	-14182	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
92089	chr17	7560921	7562880	+	0	NA	promoter-TSS (NR_037926)	promoter-TSS (NR_037926)	-19	NM_015670	26168		NM_015670	ENSG00000161956	SENP3	SMT3IP1|SSP3|Ulp1	SUMO specific peptidase 3	protein-coding
109919	chr19	1296751	1297050	+	0	NA	intron (NM_001405, intron 2 of 3)	intron (NM_001405, intron 2 of 3)	11027	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
21210	chr1	204080601	204080800	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	7585	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
5135	chr1	24894871	24895100	+	0	NA	Intergenic	MIR|SINE|MIR	24431	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
83552	chr16	28084101	28084500	+	0	NA	Intergenic	Intergenic	-20586	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
72173	chr15	29133501	29133700	+	0	NA	intron (NM_015307, intron 7 of 10)	intron (NM_015307, intron 7 of 10)	62942	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
56878	chr12	120295871	120296400	+	0	NA	intron (NM_001385735, intron 1 of 3)	L1ME2z|LINE|L1	-2898	NR_003925	26835		NR_003925	ENSG00000200795	RNU4-1	RNU4A|RNU4B2|U4|U4BL	RNA, U4 small nuclear 1	snRNA
86733	chr16	67604071	67604630	+	0	NA	intron (NM_001191022, intron 2 of 9)	AluY|SINE|Alu	33577	NM_001363916	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
55965	chr12	110048001	110049530	+	0	NA	promoter-TSS (NR_148516)	promoter-TSS (NR_148516)	-118	NR_148517	400073		NM_207435	ENSG00000174456	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
80190	chr16	2135201	2136800	+	0	NA	promoter-TSS (NM_000296)	promoter-TSS (NM_000296)	-102	NM_000296	5310		NM_000296	ENSG00000008710	PKD1	PBP|PC1|Pc-1|TRPP1	polycystin 1, transient receptor potential channel interacting	protein-coding
159775	chr3	16308071	16308630	+	0	NA	intron (NM_001352982, intron 10 of 10)	intron (NM_001352982, intron 10 of 10)	43138	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
7569	chr1	35167221	35167650	+	0	NA	Intergenic	AluSz|SINE|Alu	25710	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
126283	chr2	27201101	27201530	+	0	NA	intron (NR_028323, intron 14 of 16)	intron (NR_028323, intron 14 of 16)	10953	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
17350	chr1	156493621	156493880	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	-3063	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
94360	chr17	28911251	28911350	+	0	NA	TTS (NM_020889)	TTS (NM_020889)	-8221	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
169167	chr3	156672121	156672580	+	0	NA	TTS (NR_027954)	TTS (NR_027954)	-2240	NM_015508	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
83044	chr16	22322421	22323580	+	0	NA	intron (NM_018119, intron 14 of 20).2	intron (NM_018119, intron 14 of 20).2	25591	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
217046	chr8	23272501	23272700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-15492	NR_125897	203069		NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
8913	chr1	43978901	43980130	+	0	NA	promoter-TSS (NM_001005417)	promoter-TSS (NM_001005417)	313	NM_003780	8704		NM_003780	ENSG00000117411	B4GALT2	B4Gal-T2|B4Gal-T3|beta4Gal-T2	beta-1,4-galactosyltransferase 2	protein-coding
59856	chr13	30572371	30573500	+	0	NA	intron (NM_001370340, intron 1 of 4)	intron (NM_001370340, intron 1 of 4)	44652	NM_001370340	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
38432	chr11	45127851	45128150	+	0	NA	intron (NM_001359633, intron 2 of 7)	L1PA4|LINE|L1	-18639	NM_001384648	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
126912	chr2	32590871	32591030	+	0	NA	intron (NM_016252, intron 66 of 73)	intron (NM_016252, intron 66 of 73)	-16132	NR_125793	103752586		NR_125793	ENSG00000290864	BIRC6-AS2	linc-birc6|megamind	BIRC6 antisense RNA 2	ncRNA
100592	chr17	63437071	63437980	+	0	NA	exon (NM_001915, exon 2 of 6)	exon (NM_001915, exon 2 of 6)	2742	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
145625	chr20	44733271	44733700	+	0	NA	intron (NR_132377, intron 3 of 4)	MER5A|DNA|hAT-Charlie	-12380	NM_022358	60598		NM_022358	ENSG00000124249	KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	potassium two pore domain channel subfamily K member 15	protein-coding
136362	chr2	176092721	176093380	+	0	NA	exon (NM_000523, exon 1 of 2)	exon (NM_000523, exon 1 of 2)	329	NM_000523	3239		NM_000523	ENSG00000128714	HOXD13	BDE|BDSD|HOX4I|SPD|SPD1	homeobox D13	protein-coding
171597	chr3	197227751	197228050	+	0	NA	intron (NM_001204386, intron 4 of 24)	intron (NM_001204386, intron 4 of 24)	-43769	NM_001204388	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
189575	chr5	175506801	175507000	+	0	NA	intron (NM_001322978, intron 2 of 10)	AluSg4|SINE|Alu	28340	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
59391	chr13	24995251	24995550	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-26931	NR_026730	646405		NM_001126062		TPTE2P1	-	TPTE2 pseudogene 1	pseudo
18819	chr1	167652371	167652800	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	22353	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
29532	chr10	70886401	70886800	+	0	NA	intron (NM_001323004, intron 1 of 3)	intron (NM_001323004, intron 1 of 3)	1281	NM_001289797	5092		NM_000281	ENSG00000166228	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase 1	protein-coding
128718	chr2	61763601	61764900	+	0	NA	Intergenic	CpG	89810	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
164434	chr3	59313371	59313540	+	0	NA	Intergenic	Intergenic	-263423	NM_001351534	200844		NM_198463	ENSG00000163689	CFAP20DC	C3orf67	CFAP20 domain containing	protein-coding
201340	chr6	144543301	144543500	+	0	NA	intron (NM_007124, intron 45 of 73)	L2a|LINE|L2	-39748	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
81662	chr16	10987171	10987930	+	0	NA	intron (NM_001243403, intron 9 of 20)	intron (NM_001243403, intron 9 of 20)	42986	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
201875	chr6	150720801	150721000	+	0	NA	promoter-TSS (NM_001329802)	promoter-TSS (NM_001329802)	-199	NM_001329801	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
172464	chr4	2040761	2041400	+	0	NA	promoter-TSS (NM_001168243)	promoter-TSS (NM_001168243)	-913	NM_001168243	401115		NM_001141936	ENSG00000243449	NICOL1	C4orf48|CHR4_55|NICOL	NELL2 interacting cell ontogeny regulator 1	protein-coding
183131	chr5	74867701	74867930	+	0	NA	promoter-TSS (NM_015566)	promoter-TSS (NM_015566)	-849	NM_015566	26049		NM_015566	ENSG00000198780	FAM169A	SLAP|SLAP75	family with sequence similarity 169 member A	protein-coding
121788	chr19	47810251	47810550	+	0	NA	Intergenic	AluSg|SINE|Alu	-6796	NM_198479	284355		NM_198479	ENSG00000178928	TPRX1	TPRX	tetrapeptide repeat homeobox 1	protein-coding
14571	chr1	145147101	145147370	+	0	NA	Intergenic	L1HS|LINE|L1	20372	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
166736	chr3	121746471	121746930	+	0	NA	intron (NM_001366282, intron 1 of 21)	AluSq2|SINE|Alu	3041	NM_001366284	2804		NM_004487	ENSG00000173230	GOLGB1	GCP|GCP372|GOLIM1	golgin B1	protein-coding
35274	chr11	921371	921930	+	0	NA	Intergenic	Intergenic	-4159	NM_001242837	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
2315	chr1	9110751	9111090	+	0	NA	intron (NM_024980, intron 2 of 3)	intron (NM_024980, intron 2 of 3)	18182	NM_024980	80045		NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
11546	chr1	91016951	91017430	+	0	NA	intron (NM_032186, intron 1 of 3)	intron (NM_032186, intron 1 of 3)	4318	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
67202	chr14	68926051	68926550	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	53002	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
229367	chr9	121063351	121063530	+	0	NA	intron (NM_001317163, intron 1 of 40)	L1M4|LINE|L1	11425	NM_001317163	727		NM_001735	ENSG00000106804	C5	C5D|C5a|C5b|CPAMD4|ECLZB	complement C5	protein-coding
12142	chr1	100086601	100086800	+	0	NA	intron (NM_194292, intron 15 of 16)	AluJo|SINE|Alu	46230	NM_194292	163786		NM_194292	ENSG00000156876	SASS6	MCPH14|SAS-6|SAS6	SAS-6 centriolar assembly protein	protein-coding
215278	chr7	157018851	157019830	+	0	NA	Intergenic	CpG	8483	NR_038835	645249		NR_038835	ENSG00000243479	MNX1-AS1	CCAT5|MAYA	MNX1 antisense RNA 1 (head to head)	ncRNA
230776	chr9	128916371	128916730	+	0	NA	3' UTR (NM_001127245, exon 3 of 3)	3' UTR (NM_001127245, exon 3 of 3)	-4432	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
156245	chr22	40398251	40398700	+	0	NA	intron (NM_001350047, intron 1 of 20)	intron (NM_001350047, intron 1 of 20)	27881	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
79659	chr16	1198171	1198330	+	0	NA	intron (NM_021098, intron 5 of 34)	intron (NM_021098, intron 5 of 34)	27018	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
41694	chr11	66636271	66636800	+	0	NA	intron (NM_001198846, intron 1 of 1)	intron (NM_001198846, intron 1 of 1)	-2082	NM_001198843	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
207844	chr7	50347321	50348100	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	28662	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
222508	chr8	140525701	140525900	+	0	NA	3' UTR (NM_001164623, exon 18 of 18)	3' UTR (NM_001164623, exon 18 of 18)	13804	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
95904	chr17	38897521	38897780	+	0	NA	intron (NR_073384, intron 4 of 7)	intron (NR_073384, intron 4 of 7)	-17329	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
150302	chr21	41997751	41997850	+	0	NA	intron (NM_020727, intron 1 of 1)	intron (NM_020727, intron 1 of 1)	-11394	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
99536	chr17	50358221	50358680	+	0	NA	non-coding (NR_110010, exon 9 of 10)	non-coding (NR_110010, exon 9 of 10)	12324	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
53885	chr12	70317621	70318150	+	0	NA	intron (NM_001199302, intron 4 of 16)	intron (NM_001199302, intron 4 of 16)	-48405	NM_014505	27345		NM_014505	ENSG00000135643	KCNMB4	-	potassium calcium-activated channel subfamily M regulatory beta subunit 4	protein-coding
114679	chr19	13095121	13097380	+	0	NA	3' UTR (NM_001378405, exon 11 of 11)	3' UTR (NM_001378405, exon 11 of 11)	6608	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
74487	chr15	60002101	60002950	+	0	NA	Intergenic	Intergenic	-1786	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
178481	chr4	148444901	148446300	+	0	NA	promoter-TSS (NM_001354819)	promoter-TSS (NM_001354819)	-902	NM_001354819	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
153833	chr22	29942901	29943100	+	0	NA	intron (NM_153051, intron 1 of 18)	MER11C|LTR|ERVK	59826	NM_021090	8897		NM_021090	ENSG00000100330	MTMR3	FYVE-DSP1|ZFYVE10	myotubularin related protein 3	protein-coding
189462	chr5	173039371	173039900	+	0	NA	Intergenic	Intergenic	-16717	NM_001168393	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
147350	chr20	58306071	58307460	+	0	NA	intron (NR_003505, intron 2 of 16)	intron (NR_003505, intron 2 of 16)	2674	NR_003505	55370		NM_018498		PPP4R1L	C20orf192|PPP4R1P1|PRO1085	protein phosphatase 4 regulatory subunit 1 like (pseudogene)	pseudo
46090	chr11	122842621	122844210	+	0	NA	intron (NM_019604, intron 1 of 9)	intron (NM_019604, intron 1 of 9)	4915	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
142915	chr20	18165701	18166100	+	0	NA	intron (NM_020536, intron 7 of 10)	intron (NM_020536, intron 7 of 10)	20801	NR_028402	57325		NM_020536	ENSG00000149474	KAT14	ATAC2|CRP2BP|CSRP2BP|PRO1194|dJ717M23.1	lysine acetyltransferase 14	protein-coding
237545	chrX	120475421	120475780	+	0	NA	Intergenic	Intergenic	-6251	NM_013995	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
220926	chr8	108244921	108245180	+	0	NA	intron (NM_001568, intron 1 of 12)	intron (NM_001568, intron 1 of 12)	3667	NM_001568	3646		NM_001568	ENSG00000104408	EIF3E	EIF3-P48|EIF3S6|INT6|eIF3-p46	eukaryotic translation initiation factor 3 subunit E	protein-coding
44229	chr11	96357871	96358430	+	0	NA	intron (NM_024725, intron 9 of 9)	intron (NM_024725, intron 9 of 9)	-14955	NM_032427	84441		NM_032427	ENSG00000184384	MAML2	MAM-3|MAM2|MAM3|MLL-MAML2	mastermind like transcriptional coactivator 2	protein-coding
238020	chrX	135066271	135066530	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-14265	NM_001134321	26071		NM_015582	ENSG00000203950	RTL8A	CXX1b|FAM127B|MAR8A|SIRH6	retrotransposon Gag like 8A	protein-coding
171411	chr3	196210501	196210880	+	0	NA	exon (NM_001039617, exon 2 of 8)	exon (NM_001039617, exon 2 of 8)	710	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
61441	chr13	51902871	51903030	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	40981	NM_031290	83446		NM_031290	ENSG00000123171	CCDC70	-	coiled-coil domain containing 70	protein-coding
65449	chr14	51738851	51739100	+	0	NA	Intergenic	Intergenic	21692	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
146026	chr20	47196421	47196680	+	0	NA	Intergenic	Intergenic	29583	NR_037410	100500814		NR_037410	ENSG00000264901	MIR3616	mir-3616	microRNA 3616	ncRNA
157351	chr22	44680471	44681230	+	0	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	3765	NM_001198721	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
64476	chr14	24279121	24279980	+	0	NA	Intergenic	Intergenic	-7923	NM_182836	5875		NM_004581	ENSG00000100949	RABGGTA	PTAR3	Rab geranylgeranyltransferase subunit alpha	protein-coding
42496	chr11	70205401	70206300	+	0	NA	intron (NM_003824, intron 1 of 1)	intron (NM_003824, intron 1 of 1)	2554	NM_003824	8772		NM_003824	ENSG00000168040	FADD	GIG3|IMD90|MORT1	Fas associated via death domain	protein-coding
78734	chr15	98775621	98775880	+	0	NA	intron (NM_000875, intron 2 of 20)	MER5A|DNA|hAT-Charlie	-8676	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
28894	chr10	62851421	62851780	+	0	NA	Intergenic	L2c|LINE|L2	-32433	NM_001136178	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
196408	chr6	43368821	43370400	+	0	NA	promoter-TSS (NM_014345)	promoter-TSS (NM_014345)	37	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
226313	chr9	68974421	68974880	+	0	NA	intron (NR_110647, intron 1 of 2)	intron (NR_110647, intron 1 of 2)	1191	NR_110647	101927069		NR_110647		LOC101927069	-	uncharacterized LOC101927069	ncRNA
231574	chr9	131504001	131505030	+	0	NA	5' UTR (NM_001353198, exon 2 of 20)	5' UTR (NM_001353198, exon 2 of 20)	1597	NM_001353196	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
184355	chr5	96994621	96994880	+	0	NA	intron (NM_175920, intron 6 of 17)	intron (NM_175920, intron 6 of 17)	36317	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
46065	chr11	122743451	122744880	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	88443	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
108573	chr18	75025471	75025830	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	179863	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
141854	chr20	577471	577630	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	32716	NM_004609	6939		NM_004609	ENSG00000125878	TCF15	EC2|PARAXIS|bHLHa40	transcription factor 15	protein-coding
78472	chr15	92894671	92895900	+	0	NA	intron (NR_037600, intron 4 of 4)	intron (NR_037600, intron 4 of 4)	-5039	NM_001271	1106		NM_001271	ENSG00000173575	CHD2	DEE94|EEOC	chromodomain helicase DNA binding protein 2	protein-coding
169239	chr3	157145271	157146100	+	0	NA	3' UTR (NM_001308185, exon 11 of 11)	3' UTR (NM_001308185, exon 11 of 11)	14462	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
233594	chrX	321271	321600	+	0	NA	TTS (NR_027231)	TTS (NR_027231)	2290	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
228394	chr9	99130271	99130630	+	0	NA	intron (NM_001130916, intron 2 of 7)	intron (NM_001130916, intron 2 of 7)	25337	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
275	chr1	931801	932080	+	0	NA	intron (NM_001385641, intron 4 of 13)	intron (NM_001385641, intron 4 of 13)	6209	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
31105	chr10	89304051	89304350	+	0	NA	intron (NM_001547, intron 1 of 1)	intron (NM_001547, intron 1 of 1)	2154	NM_001547	3433		NM_001547	ENSG00000119922	IFIT2	G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54|ISG-54 K|ISG-54K|ISG54|P54|cig42	interferon induced protein with tetratricopeptide repeats 2	protein-coding
186125	chr5	134147351	134147450	+	0	NA	non-coding (NR_033449, exon 8 of 8)	non-coding (NR_033449, exon 8 of 8)	23782	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
4123	chr1	19325051	19325150	+	0	NA	intron (NM_001287531, intron 3 of 7)	intron (NM_001287531, intron 3 of 7)	12774	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
120974	chr19	45714601	45715200	+	0	NA	5' UTR (NM_001329632, exon 1 of 2)	5' UTR (NM_001329632, exon 1 of 2)	378	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
168929	chr3	152356321	152357330	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-15835	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
192893	chr6	27504621	27504900	+	0	NA	Intergenic	Intergenic	-31642	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
217079	chr8	23709851	23710150	+	0	NA	Intergenic	CpG	-3244	NM_001136271	137814		NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
229605	chr9	123775771	123776130	+	0	NA	intron (NM_001352965, intron 1 of 20)	intron (NM_001352965, intron 1 of 20)	154176	NM_001352968	57706		NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
13519	chr1	114756981	114758980	+	0	NA	promoter-TSS (NM_001007553)	promoter-TSS (NM_001007553)	4	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
232745	chr9	136655171	136656280	+	0	NA	intron (NR_135132, intron 1 of 1)	intron (NR_135132, intron 1 of 1)	-3131	NR_046367	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
66414	chr14	61514721	61515530	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	55069	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
32133	chr10	101238451	101239100	+	0	NA	TTS (NR_029380)	TTS (NR_029380)	9181	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
94025	chr17	27217671	27217830	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	76246	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
72008	chr15	26079871	26080580	+	0	NA	Intergenic	Intergenic	-35588	NR_038852	503519		NR_038851	ENSG00000259150	LINC00929	-	long intergenic non-protein coding RNA 929	ncRNA
105906	chr18	3405871	3406030	+	0	NA	Intergenic	HAL1|LINE|L1	-6059	NM_174886	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
126698	chr2	30155801	30156330	+	0	NA	intron (NM_001127401, intron 3 of 4)	intron (NM_001127401, intron 3 of 4)	9058	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
199383	chr6	116274501	116274800	+	0	NA	TTS (NM_003309)	TTS (NM_003309)	5280	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
31498	chr10	96664701	96664930	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	55699	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
131526	chr2	96562571	96563130	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	24971	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
76166	chr15	72807801	72808000	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-24142	NM_001365225	83440		NM_031284	ENSG00000159322	ADPGK	2610017G09Rik|ADP-GK	ADP dependent glucokinase	protein-coding
110671	chr19	2259201	2259680	+	0	NA	Intergenic	L1MB5|LINE|L1	-3023	NM_144616	126306		NM_144616	ENSG00000167476	JSRP1	JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding
229955	chr9	126689871	126690800	+	0	NA	intron (NM_001174147, intron 2 of 7)	L2c|LINE|L2	76407	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
50308	chr12	46460051	46460450	+	0	NA	intron (NR_125378, intron 3 of 3)	intron (NR_125378, intron 3 of 3)	76143	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
171742	chr3	198071621	198072200	+	0	NA	intron (NR_003291, intron 4 of 9)	intron (NR_003291, intron 4 of 9)	8761	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
130623	chr2	86030421	86030680	+	0	NA	intron (NM_015425, intron 30 of 33)	intron (NM_015425, intron 30 of 33)	75336	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
97792	chr17	44760751	44761380	+	0	NA	intron (NM_001318933, intron 2 of 26)	intron (NM_001318933, intron 2 of 26)	2077	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
205150	chr7	7192021	7192280	+	0	NA	intron (NM_020156, intron 1 of 3)	L1PB1|LINE|L1	9606	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
96269	chr17	39859951	39860750	+	0	NA	intron (NM_183231, intron 1 of 5)	intron (NM_183231, intron 1 of 5)	3838	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
182678	chr5	67360221	67360480	+	0	NA	Intergenic	L2b|LINE|L2	-163551	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
85872	chr16	57044101	57044500	+	0	NA	intron (NM_001384955, intron 20 of 47)	AluSx1|SINE|Alu	-48283	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
22300	chr1	213013321	213013580	+	0	NA	intron (NM_144567, intron 1 of 8)	intron (NM_144567, intron 1 of 8)	2059	NM_001300755	90806		NM_144567	ENSG00000174606	ANGEL2	Ccr4d|KIAA0759L	angel homolog 2	protein-coding
166360	chr3	112993101	112993500	+	0	NA	intron (NM_014170, intron 2 of 5)	intron (NM_014170, intron 2 of 5)	2316	NM_014170	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
157857	chr22	48911321	48912200	+	0	NA	Intergenic	Intergenic	44990	NR_038944	100128946		NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA
105656	chr18	2573671	2573830	+	0	NA	intron (NM_006101, intron 2 of 16)	intron (NM_006101, intron 2 of 16)	2193	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
25913	chr10	11307751	11307850	+	0	NA	intron (NM_001326330, intron 9 of 12)	intron (NM_001326330, intron 9 of 12)	36874	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
212177	chr7	116961571	116961730	+	0	NA	intron (NR_161422, intron 1 of 14)	L1PREC2|LINE|L1	-7316	NR_002330	93653		NR_002330	ENSG00000227199	ST7-AS1	ST7AS1|ST7OT1	ST7 antisense RNA 1	ncRNA
58585	chr12	132451101	132451900	+	0	NA	Intergenic	Intergenic	-38651	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
106055	chr18	9088151	9088850	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-14199	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
146277	chr20	49096251	49096750	+	0	NA	non-coding (NR_045796, exon 22 of 22)	non-coding (NR_045796, exon 22 of 22)	50188	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
90925	chr17	2603571	2603730	+	0	NA	intron (NM_000430, intron 1 of 10)	intron (NM_000430, intron 1 of 10)	9996	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
143219	chr20	24967151	24967250	+	0	NA	intron (NM_020531, intron 8 of 8)	AluSz|SINE|Alu	17931	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
117972	chr19	33370321	33371150	+	0	NA	Intergenic	AluJb|SINE|Alu	-2974	NM_001806	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
102448	chr17	75694121	75694380	+	0	NA	intron (NR_126036, intron 4 of 9)	intron (NR_126036, intron 4 of 9)	26912	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
1209	chr1	2260271	2261500	+	0	NA	intron (NM_003036, intron 1 of 6)	L1MC4|LINE|L1	32566	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
51293	chr12	51242901	51243400	+	0	NA	3' UTR (NM_001136268, exon 3 of 3)	3' UTR (NM_001136268, exon 3 of 3)	4324	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
2460	chr1	9645651	9645950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5931	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
77836	chr15	88645271	88645830	+	0	NA	intron (NM_001303237, intron 2 of 3)	intron (NM_001303237, intron 2 of 3)	6534	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
190118	chr5	177979021	177979530	+	0	NA	Intergenic	Intergenic	16967	NM_006261	5626		NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
227708	chr9	93033271	93033500	+	0	NA	intron (NM_001286993, intron 16 of 17)	(CCT)n|Simple_repeat|Simple_repeat	-18441	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
47537	chr12	4276751	4277830	+	0	NA	intron (NM_001759, intron 2 of 4)	intron (NM_001759, intron 2 of 4)	-1106	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
203895	chr7	1491651	1492230	+	0	NA	intron (NM_001080453, intron 16 of 47)	L1MB8|LINE|L1	12449	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
130724	chr2	86759651	86760150	+	0	NA	intron (NM_022780, intron 4 of 8)	intron (NM_022780, intron 4 of 8)	31013	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
184967	chr5	113378921	113379250	+	0	NA	intron (NM_001085377, intron 2 of 18)	intron (NM_001085377, intron 2 of 18)	55904	NM_032028	83942		NM_032028	ENSG00000212122	TSSK1B	FKSG81|SPOGA4|STK22D|TSK1|TSSK1	testis specific serine kinase 1B	protein-coding
173577	chr4	10120951	10121250	+	0	NA	Intergenic	Intergenic	-4301	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
23594	chr1	229753871	229754230	+	0	NA	Intergenic	Intergenic	127803	NM_014777	9816		NM_014777	ENSG00000135763	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis homolog	protein-coding
27796	chr10	35564351	35564850	+	0	NA	intron (NM_001282852, intron 7 of 8)	intron (NM_001282852, intron 7 of 8)	-40741	NM_153368	219770		NM_153368	ENSG00000177291	GJD4	CX40.1	gap junction protein delta 4	protein-coding
35754	chr11	2143801	2144000	+	0	NA	intron (NR_133657, intron 1 of 2)	intron (NR_133657, intron 1 of 2)	-2957	NM_001291862	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
229861	chr9	126399701	126399900	+	0	NA	intron (NM_033446, intron 6 of 9)	Plat_L3|LINE|CR1	10704	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
176519	chr4	95155771	95156350	+	0	NA	3' UTR (NM_001256794, exon 11 of 11)	3' UTR (NM_001256794, exon 11 of 11)	64569	NM_001256794	658		NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMD3|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
554	chr1	1246521	1247880	+	0	NA	promoter-TSS (NM_001014980)	promoter-TSS (NM_001014980)	-478	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
235848	chrX	49922291	49923230	+	0	NA	5' UTR (NM_001272102, exon 1 of 4)	5' UTR (NM_001272102, exon 1 of 4)	164	NM_001127898	1184		NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENT1|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	chloride voltage-gated channel 5	protein-coding
97981	chr17	45263471	45263930	+	0	NA	3' UTR (NM_003954, exon 16 of 16)	3' UTR (NM_003954, exon 16 of 16)	-1606	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
50742	chr12	48990921	48991180	+	0	NA	Intergenic	Intergenic	-7297	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
125065	chr2	9626371	9626900	+	0	NA	intron (NM_006826, intron 2 of 5)	AluSx|SINE|Alu	4362	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
124463	chr19	58522771	58523250	+	0	NA	intron (NM_001316980, intron 1 of 2)	intron (NM_001316980, intron 1 of 2)	-3200	NM_001316979	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
196064	chr6	42214851	42215530	+	0	NA	intron (NM_018141, intron 1 of 6)	AluSz|SINE|Alu	2671	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
38615	chr11	46335171	46335330	+	0	NA	intron (NM_201532, intron 1 of 30)	AluSx1|SINE|Alu	2324	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
111025	chr19	3062201	3063550	+	0	NA	promoter-TSS (NM_001130)	promoter-TSS (NM_001130)	91	NM_198969	166		NM_001130	ENSG00000104964	TLE5	AES|AES-1|AES-2|ESP1|GRG|GRG5|Grg-5	TLE family member 5, transcriptional modulator	protein-coding
149747	chr21	34534721	34535180	+	0	NA	intron (NM_004414, intron 1 of 3)	intron (NM_004414, intron 1 of 3)	-7940	NM_001331016	1827		NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
90717	chr17	1873421	1874330	+	0	NA	intron (NM_001355120, intron 6 of 16)	AluSz|SINE|Alu	43870	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
42285	chr11	68331051	68331880	+	0	NA	intron (NM_002335, intron 1 of 22)	intron (NM_002335, intron 1 of 22)	18874	NM_002335	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
38774	chr11	47175121	47175380	+	0	NA	exon (NM_001242832, exon 4 of 15)	exon (NM_001242832, exon 4 of 15)	1629	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
193627	chr6	30781751	30782450	+	0	NA	intron (NR_138037, intron 1 of 3)	intron (NR_138037, intron 1 of 3)	15275	NR_138037	105375013		NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20	ncRNA
223226	chr8	143605101	143605300	+	0	NA	non-coding (NR_138144, exon 7 of 7).2	non-coding (NR_138144, exon 7 of 7).2	4375	NM_001329866	65263		NM_023078	ENSG00000104524	PYCR3	PYCRL	pyrroline-5-carboxylate reductase 3	protein-coding
46320	chr11	125141621	125142230	+	0	NA	Intergenic	Intergenic	22684	NR_125759	103695364		NR_125759	ENSG00000254880	PKNOX2-DT	PKNOX2-AS1	PKNOX2 divergent transcript	ncRNA
65813	chr14	54877271	54877830	+	0	NA	TTS (NR_036194)	TTS (NR_036194)	643	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
208457	chr7	66981521	66981980	+	0	NA	Intergenic	Intergenic	13836	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
138459	chr2	206330821	206330900	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	55850	NM_001285549	57683		NM_020923	ENSG00000204186	ZDBF2	Slx9	zinc finger DBF-type containing 2	protein-coding
57639	chr12	122513821	122514480	+	0	NA	intron (NR_036436, intron 6 of 9)	intron (NR_036436, intron 6 of 9)	12786	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
4316	chr1	20376821	20377200	+	0	NA	intron (NR_033887, intron 9 of 11)	intron (NR_033887, intron 9 of 11)	51784	NR_033887	339505		NR_033887		LINC01141	-	long intergenic non-protein coding RNA 1141	ncRNA
69642	chr14	97785571	97785730	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-22819	NR_146447	100132612		NR_146447	ENSG00000258869	LINC02312	-	long intergenic non-protein coding RNA 2312	ncRNA
121294	chr19	46726521	46727350	+	0	NA	intron (NM_001039877, intron 9 of 17)	intron (NM_001039877, intron 9 of 17)	-9808	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
173320	chr4	7539271	7540630	+	0	NA	intron (NM_020777, intron 3 of 26)	intron (NM_020777, intron 3 of 26)	79922	NR_036238	100422826		NR_036238	ENSG00000266690	MIR4274	-	microRNA 4274	ncRNA
214140	chr7	144348171	144348980	+	0	NA	intron (NR_126022, intron 1 of 3)	intron (NR_126022, intron 1 of 3)	-6827	NM_005435	7984		NM_005435	ENSG00000050327	ARHGEF5	GEF5|P60|TIM|TIM1	Rho guanine nucleotide exchange factor 5	protein-coding
160403	chr3	28218421	28218990	+	0	NA	Intergenic	Intergenic	-22914	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
114646	chr19	13014801	13015000	+	0	NA	intron (NM_001365902, intron 1 of 10)	intron (NM_001365902, intron 1 of 10)	-9072	NM_001271044	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
110358	chr19	1894851	1896010	+	0	NA	Intergenic	Intergenic	-9934	NM_031213	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
154910	chr22	37186101	37187400	+	0	NA	intron (NM_001365878, intron 3 of 4)	intron (NM_001365878, intron 3 of 4)	1497	NM_031910	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
114990	chr19	14044571	14045500	+	0	NA	intron (NM_004843, intron 6 of 13)	AluSg4|SINE|Alu	12603	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
158050	chr22	49943851	49944100	+	0	NA	Intergenic	Intergenic	-16797	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
84404	chr16	30340421	30341180	+	0	NA	Intergenic	Intergenic	-5426	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
59021	chr13	20195401	20195600	+	0	NA	Intergenic	Intergenic	-2562	NM_004004	2706		NM_004004	ENSG00000165474	GJB2	BAPS|CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein beta 2	protein-coding
237321	chrX	118459521	118459800	+	0	NA	Intergenic	Intergenic	-36249	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
230749	chr9	128888401	128888600	+	0	NA	intron (NM_019594, intron 2 of 3)	intron (NM_019594, intron 2 of 3)	-5977	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
100747	chr17	63943551	63944250	+	0	NA	intron (NM_000334, intron 21 of 23)	intron (NM_000334, intron 21 of 23)	-11569	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
18443	chr1	161523501	161525600	+	0	NA	promoter-TSS (NM_002155)	promoter-TSS (NM_002155)	10	NM_002155	3310		NM_002155	ENSG00000173110	HSPA6	HSP70B'	heat shock protein family A (Hsp70) member 6	protein-coding
89461	chr16	89037421	89037880	+	0	NA	Intergenic	Intergenic	-56202	NR_147928	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
221097	chr8	117523771	117524130	+	0	NA	intron (NM_080651, intron 1 of 3)	AluSg|SINE|Alu	3237	NM_080651	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
217373	chr8	28077221	28078000	+	0	NA	intron (NM_001010906, intron 1 of 18)	intron (NM_001010906, intron 1 of 18)	6326	NM_001010906	389643		NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC|SLIPGC	nuclear GTPase, germinal center associated	protein-coding
116443	chr19	18034971	18035580	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	27105	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
88852	chr16	87608321	87608700	+	0	NA	intron (NM_020655, intron 1 of 4)	intron (NM_020655, intron 1 of 4)	6002	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
168194	chr3	141050751	141051350	+	0	NA	promoter-TSS (NM_080862)	promoter-TSS (NM_080862)	-297	NM_080862	92369		NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
75234	chr15	64867171	64867530	+	0	NA	3' UTR (NM_025201, exon 6 of 6)	3' UTR (NM_025201, exon 6 of 6)	25435	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
30602	chr10	80176471	80176830	+	0	NA	intron (NM_145868, intron 1 of 15)	intron (NM_145868, intron 1 of 15)	27841	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
182351	chr5	59367851	59368030	+	0	NA	intron (NM_001364600, intron 3 of 7)	intron (NM_001364600, intron 3 of 7)	-10970	NM_001197219	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
120038	chr19	41965051	41965650	+	0	NA	Intergenic	L1ME2|LINE|L1	-6029	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
226160	chr9	63820321	63820750	+	0	NA	promoter-TSS (NR_039688).3	promoter-TSS (NR_039688).3	-881	NR_039688	100616184		NR_039688	ENSG00000276029	MIR4477A	-	microRNA 4477a	ncRNA
24683	chr1	247172951	247173580	+	0	NA	Intergenic	Intergenic	-1245	NM_003431	7678		NM_003431	ENSG00000196418	ZNF124	HZF-16|HZF16|ZK7	zinc finger protein 124	protein-coding
172008	chr4	962851	963450	+	0	NA	exon (NM_001347, exon 16 of 23)	exon (NM_001347, exon 16 of 23)	10419	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
126666	chr2	29114451	29115900	+	0	NA	promoter-TSS (NM_024692)	promoter-TSS (NM_024692)	-240	NM_001287527	79745		NM_024692	ENSG00000115295	CLIP4	RSNL2	CAP-Gly domain containing linker protein family member 4	protein-coding
75452	chr15	65828151	65829650	+	0	NA	Intergenic	Intergenic	-36607	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
89800	chr16	89511421	89511680	+	0	NA	intron (NM_199367, intron 2 of 9)	intron (NM_199367, intron 2 of 9)	3147	NM_003119	6687		NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7 matrix AAA peptidase subunit, paraplegin	protein-coding
68068	chr14	75263501	75263930	+	0	NA	Intergenic	Charlie18a|DNA|hAT-Charlie	-15113	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
6324	chr1	27661601	27661800	+	0	NA	intron (NR_151722, intron 1 of 1)	L2a|LINE|L2	1022	NR_151722	111216282		NR_151722	ENSG00000233975	LINC02574	HEAL	long intergenic non-protein coding RNA 2574	ncRNA
234412	chrX	16790801	16791480	+	0	NA	intron (NM_001168683, intron 1 of 7)	intron (NM_001168683, intron 1 of 7)	4674	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
148051	chr20	63237271	63237830	+	0	NA	intron (NM_139317, intron 1 of 6)	intron (NM_139317, intron 1 of 6)	-1229	NR_036163	100423014		NR_036163	ENSG00000266463	MIR3196	mir-3196	microRNA 3196	ncRNA
199089	chr6	111664621	111665080	+	0	NA	intron (NM_001370529, intron 11 of 11)	intron (NM_001370529, intron 11 of 11)	-58576	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
144911	chr20	36954071	36954630	+	0	NA	Intergenic	Tigger11a|DNA|TcMar-Tigger	-2642	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
26055	chr10	12588171	12589000	+	0	NA	intron (NM_153498, intron 2 of 10)	intron (NM_153498, intron 2 of 10)	9832	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
212199	chr7	117212971	117213280	+	0	NA	intron (NM_001369606, intron 14 of 16)	intron (NM_001369606, intron 14 of 16)	30444	NR_002332	93655		NR_002332	ENSG00000004866	ST7-OT3	NCRNA00026|ST7|ST7OT3	ST7 overlapping transcript 3	ncRNA
67523	chr14	70994021	70994480	+	0	NA	intron (NM_014982, intron 7 of 35)	Charlie5|DNA|hAT-Charlie	86791	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
12218	chr1	100404251	100404350	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	51794	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
139116	chr2	218979551	218983230	+	0	NA	3' UTR (NM_017521, exon 3 of 3)	3' UTR (NM_017521, exon 3 of 3)	3794	NM_017521	54738		NM_017521	ENSG00000163497	FEV	HSRNAFEV|PET-1	FEV transcription factor, ETS family member	protein-coding
150781	chr21	43817851	43817950	+	0	NA	Intergenic	Intergenic	-5333	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
1035	chr1	1878351	1878450	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	12687	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
127025	chr2	37081951	37082050	+	0	NA	intron (NM_019024, intron 2 of 35)	HAL1|LINE|L1	2372	NM_019024	54497		NM_019024	ENSG00000008869	HEATR5B	p200|p200a	HEAT repeat containing 5B	protein-coding
146299	chr20	49167351	49167600	+	0	NA	intron (NM_001322930, intron 1 of 12)	MER124|DNA?|DNA?	20859	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
66889	chr14	65167101	65167330	+	0	NA	Intergenic	MER66B|LTR|ERV1	55132	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
83276	chr16	24013671	24015080	+	0	NA	intron (NM_212535, intron 3 of 16)	intron (NM_212535, intron 3 of 16)	178392	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
8719	chr1	42455871	42457530	+	0	NA	promoter-TSS (NM_001146192)	promoter-TSS (NM_001146192)	157	NM_024664	79717		NM_024664	ENSG00000127125	PPCS	CMD2C	phosphopantothenoylcysteine synthetase	protein-coding
117294	chr19	19486451	19487100	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	28773	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
157214	chr22	43184871	43185030	+	0	NA	intron (NM_015140, intron 1 of 13)	AluSg|SINE|Alu	2184	NM_015140	23170		NM_015140	ENSG00000100304	TTLL12	dJ526I14.2	tubulin tyrosine ligase like 12	protein-coding
56924	chr12	120445871	120447280	+	0	NA	promoter-TSS (NM_016399)	promoter-TSS (NM_016399)	131	NR_033684	283459		NM_176818	ENSG00000257218	GATC	15E1.2|COXPD42	glutamyl-tRNA amidotransferase subunit C	protein-coding
47948	chr12	6839471	6839630	+	0	NA	3' UTR (NM_014262, exon 15 of 15)	3' UTR (NM_014262, exon 15 of 15)	-1375	NM_001297571	2784		NM_002075	ENSG00000111664	GNB3	CSNB1H|HG2D	G protein subunit beta 3	protein-coding
107410	chr18	46167871	46168250	+	0	NA	Intergenic	Intergenic	-5962	NM_001008239	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
133875	chr2	129849601	129849890	+	0	NA	Intergenic	Intergenic	27746	NR_149127	105373615		NR_149127	ENSG00000229536	LINC02572	-	long intergenic non-protein coding RNA 2572	ncRNA
140780	chr2	235605851	235605950	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	-87979	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
71253	chr14	105199921	105200680	+	0	NA	Intergenic	Intergenic	-18977	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
142103	chr20	2651841	2653700	+	0	NA	promoter-TSS (NR_031699)	promoter-TSS (NR_031699)	-7	NR_031699	100302138		NR_031699	ENSG00000284481	MIR1292	MIRN1292|hsa-mir-1292|mir-1292	microRNA 1292	ncRNA
212042	chr7	114953751	114954050	+	0	NA	intron (NM_199072, intron 3 of 4)	MER2|DNA|TcMar-Tigger	31746	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
61057	chr13	48252271	48252700	+	0	NA	intron (NM_021999, intron 1 of 5)	MER1B|DNA|hAT-Charlie	19279	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
206815	chr7	37065651	37065950	+	0	NA	intron (NM_014800, intron 15 of 21)	intron (NM_014800, intron 15 of 21)	68004	NR_104120	100861514		NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
133340	chr2	113914421	113914680	+	0	NA	intron (NR_102318, intron 2 of 10)	AluSg|SINE|Alu	-23558	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128540	chr2	60817601	60817800	+	0	NA	Intergenic	Intergenic	61432	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
52645	chr12	56287771	56288530	+	0	NA	intron (NM_004077, intron 1 of 10)	MIRc|SINE|MIR	12180	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
83083	chr16	22431521	22431780	+	0	NA	intron (NR_027460, intron 4 of 6).2	intron (NR_027460, intron 4 of 6).2	-5358	NR_027154	641298		NM_199284	ENSG00000237296	SMG1P1	-	SMG1 pseudogene 1	pseudo
46579	chr11	128507171	128507780	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	14835	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
216203	chr8	11866171	11866600	+	0	NA	intron (NM_001384727, intron 1 of 10)	intron (NM_001384727, intron 1 of 10)	1702	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
173599	chr4	10587521	10587980	+	0	NA	intron (NM_052964, intron 3 of 18)	MIRb|SINE|MIR	97018	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
20517	chr1	198674651	198675150	+	0	NA	intron (NM_002838, intron 2 of 32)	L1MD3|LINE|L1	35860	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
221373	chr8	123387021	123387700	+	0	NA	intron (NM_014109, intron 1 of 27)	L1ME4a|LINE|L1	9087	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
217097	chr8	24439501	24439700	+	0	NA	intron (NR_125808, intron 1 of 5)	L2|LINE|L2	-1426	NM_003817	8756		NM_003817	ENSG00000069206	ADAM7	ADAM 7|ADAM-7|EAPI|GP-83|GP83	ADAM metallopeptidase domain 7	protein-coding
236514	chrX	72026501	72026900	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	-17709	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
16221	chr1	153925051	153925580	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2343	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
123485	chr19	54187101	54187500	+	0	NA	intron (NM_024298, intron 3 of 7).3	intron (NM_024298, intron 3 of 7).3	2280	NM_024298	79143		NM_024298	ENSG00000125505	MBOAT7	BB1|LENG4|LPIAT|LPIAT1|LPLAT|LPLAT11|LRC4|MBOA7|MRT57|OACT7|hMBOA-7	membrane bound O-acyltransferase domain containing 7	protein-coding
103574	chr17	78689971	78690130	+	0	NA	intron (NM_017456, intron 10 of 12)	intron (NM_017456, intron 10 of 12)	26982	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
115630	chr19	16094771	16095630	+	0	NA	intron (NM_001367836, intron 8 of 8)	intron (NM_001367836, intron 8 of 8)	-16689	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
235361	chrX	44874501	44875330	+	0	NA	intron (NM_001291416, intron 2 of 28)	intron (NM_001291416, intron 2 of 28)	1727	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
53700	chr12	68538701	68539750	+	0	NA	Intergenic	Intergenic	-71674	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
176471	chr4	89373371	89373880	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	-65825	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
229348	chr9	120922651	120922750	+	0	NA	intron (NM_005658, intron 3 of 7)	intron (NM_005658, intron 3 of 7)	4096	NM_005658	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
215136	chr7	155408051	155408950	+	0	NA	Intergenic	Intergenic	26424	NR_147174	100286906		NR_147174		LINC03010	-	long intergenic non-protein coding RNA 3010	ncRNA
194075	chr6	31876951	31877400	+	0	NA	intron (NM_025257, intron 1 of 20).5	intron (NM_025257, intron 1 of 20).5	496	NM_001178045	80736		NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1	solute carrier family 44 member 4	protein-coding
7102	chr1	32110371	32110830	+	0	NA	intron (NM_012316, intron 1 of 13)	MIR|SINE|MIR	2544	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
109780	chr19	1140271	1141500	+	0	NA	intron (NM_014963, intron 4 of 31)	CpG	-8664	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
195473	chr6	37054421	37054680	+	0	NA	Intergenic	L2a|LINE|L2	48895	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
123618	chr19	54532351	54533250	+	0	NA	non-coding (NR_026716, exon 1 of 9).2	non-coding (NR_026716, exon 1 of 9).2	108	NR_026716	90011		NM_033206	ENSG00000290933	KIR3DX1	KIR3DL0|LENG12	killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)	pseudo
182800	chr5	68745501	68745700	+	0	NA	Intergenic	Intergenic	284327	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
106583	chr18	22167071	22167430	+	0	NA	non-coding (NR_102763, exon 2 of 2)	non-coding (NR_102763, exon 2 of 2)	1718	NR_102763	100128893		NR_102763	ENSG00000266010	GATA6-AS1	BM742401|locus5689	GATA6 antisense RNA 1 (head to head)	ncRNA
47771	chr12	6551271	6552250	+	0	NA	intron (NR_036467, intron 1 of 9)	intron (NR_036467, intron 1 of 9)	4282	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
158834	chr3	9791121	9791600	+	0	NA	exon (NM_006354, exon 2 of 9)	exon (NM_006354, exon 2 of 9)	-1135	NM_001024959	10093		NM_005718	ENSG00000241553	ARPC4	ARC20|DEVLO|P20-ARC	actin related protein 2/3 complex subunit 4	protein-coding
120292	chr19	43462051	43462300	+	0	NA	intron (NM_014400, intron 4 of 4)	intron (NM_014400, intron 4 of 4)	3433	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
36662	chr11	8070571	8070730	+	0	NA	intron (NM_003320, intron 2 of 12)	intron (NM_003320, intron 2 of 12)	-10561	NM_177972	7275		NM_003320	ENSG00000166402	TUB	RDOB|rd5	TUB bipartite transcription factor	protein-coding
112949	chr19	7751201	7751650	+	0	NA	Intergenic	THE1A|LTR|ERVL-MaLR	-3891	NM_001144897	30835		NM_021155	ENSG00000090659	CD209	CDSIGN|CLEC4L|DC-SIGN|DC-SIGN1|hDC-SIGN	CD209 molecule	protein-coding
9594	chr1	52140721	52141100	+	0	NA	Intergenic	Intergenic	-1179	NM_007324	9372		NM_004799	ENSG00000157077	ZFYVE9	MADHIP|NSP|PPP1R173|SARA|SMADIP	zinc finger FYVE-type containing 9	protein-coding
31733	chr10	97731651	97732650	+	0	NA	Intergenic	Intergenic	-4971	NM_001174120	118813		NM_144588	ENSG00000155256	ZFYVE27	PROTRUDIN|SPG33	zinc finger FYVE-type containing 27	protein-coding
70106	chr14	100234271	100235050	+	0	NA	Intergenic	MIR3|SINE|MIR	-4484	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
30979	chr10	87932071	87932230	+	0	NA	intron (NM_001304717, intron 5 of 9)	L3|LINE|CR1	68525	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
169148	chr3	156482971	156483800	+	0	NA	intron (NM_172160, intron 8 of 13)	LTR102_Mam|LTR|ERVL	-36449	NR_046618	100874084		NR_046618	ENSG00000242370	KCNAB1-AS1	-	KCNAB1 antisense RNA 1	ncRNA
215614	chr7	159195521	159196200	+	0	NA	Intergenic	Intergenic	-50903	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
56368	chr12	113152751	113153550	+	0	NA	intron (NM_001144872, intron 3 of 7)	CpG	3292	NM_001144872	387885		NM_001144872	ENSG00000186710	CFAP73	CCDC42B|MIA2	cilia and flagella associated protein 73	protein-coding
190220	chr5	178234601	178235750	+	0	NA	Intergenic	Intergenic	-2353	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
120127	chr19	42201301	42202800	+	0	NA	non-coding (NR_073051, exon 4 of 5)	non-coding (NR_073051, exon 4 of 5)	15627	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
153443	chr22	25082301	25082500	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	30292	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
90209	chr17	491121	492080	+	0	NA	Intergenic	CpG	-45660	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
32705	chr10	104045571	104045730	+	0	NA	intron (NM_000494, intron 33 of 55)	intron (NM_000494, intron 33 of 55)	2536	NR_030760	100126326		NR_030760	ENSG00000283788	MIR936	MIRN936|hsa-mir-936	microRNA 936	ncRNA
136530	chr2	177262171	177262600	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	1746	NM_001313900	4780		NM_006164	ENSG00000116044	NFE2L2	HEBP1|IMDDHH|NRF2|Nrf-2	NFE2 like bZIP transcription factor 2	protein-coding
64534	chr14	24437621	24438080	+	0	NA	3' UTR (NM_001290257, exon 8 of 8)	3' UTR (NM_001290257, exon 8 of 8)	4951	NM_020195	56948		NM_020195	ENSG00000100445	SDR39U1	C14orf124|HCDI	short chain dehydrogenase/reductase family 39U member 1	protein-coding
55492	chr12	104739101	104739850	+	0	NA	intron (NM_018413, intron 2 of 2)	MIR|SINE|MIR	147842	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
94870	chr17	31522101	31522680	+	0	NA	exon (NM_001346747, exon 4 of 12)	exon (NM_001346747, exon 4 of 12)	-12493	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
161173	chr3	39110121	39111000	+	0	NA	intron (NR_159496, intron 3 of 28)	intron (NR_159496, intron 3 of 28)	-2197	NM_031899	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
139733	chr2	229825571	229825730	+	0	NA	intron (NM_001348327, intron 8 of 41)	THE1C|LTR|ERVL-MaLR	96029	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
221079	chr8	116938151	116938530	+	0	NA	exon (NM_001025357, exon 1 of 2)	exon (NM_001025357, exon 1 of 2)	133	NM_001025357	441376		NM_001025357	ENSG00000205002	AARD	C8orf85	alanine and arginine rich domain containing protein	protein-coding
165056	chr3	71448771	71448930	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	93239	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
38930	chr11	47468151	47468450	+	0	NA	3' UTR (NM_001025596, exon 14 of 14)	3' UTR (NM_001025596, exon 14 of 14)	-19164	NM_032645	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
93794	chr17	20453601	20453800	+	0	NA	intron (NM_001042685, intron 5 of 10)	intron (NM_001042685, intron 5 of 10)	13835	NM_001367292	284194		NM_001042685	ENSG00000170298	LGALS9B	-	galectin 9B	protein-coding
97596	chr17	44113751	44114050	+	0	NA	intron (NM_001015053, intron 2 of 26)	intron (NM_001015053, intron 2 of 26)	-2012	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
170643	chr3	187050951	187051480	+	0	NA	intron (NM_173216, intron 4 of 7)	intron (NM_173216, intron 4 of 7)	12497	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
131722	chr2	97995501	97996950	+	0	NA	promoter-TSS (NM_015348)	promoter-TSS (NM_015348)	-277	NM_015348	23505		NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
225911	chr9	40112971	40113330	+	0	NA	Intergenic	Intergenic	-210421	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
171546	chr3	196803821	196804380	+	0	NA	intron (NM_002577, intron 4 of 14)	L1MC5|LINE|L1	-63756	NM_001308045	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
45024	chr11	117022651	117023780	+	0	NA	intron (NM_001281748, intron 1 of 24)	LTR29|LTR|ERV1	75213	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
202208	chr6	156780211	156780900	+	0	NA	promoter-TSS (NR_039676)	promoter-TSS (NR_039676)	-824	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
27261	chr10	29734421	29736380	+	0	NA	intron (NM_001323599, intron 1 of 38)	CpG	401	NM_003174	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
8300	chr1	40051171	40052280	+	0	NA	intron (NM_001350484, intron 2 of 13)	AluY|SINE|Alu	10699	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
15807	chr1	151290801	151291000	+	0	NA	TTS (NM_002651)	TTS (NM_002651)	8601	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
99474	chr17	50166071	50166230	+	0	NA	intron (NM_001135697, intron 1 of 7)	intron (NM_001135697, intron 1 of 7)	145	NM_001135697	6442		NM_000023	ENSG00000108823	SGCA	50DAG|ADL|DAG2|DMDA2|LGMD2D|LGMDR3|SCARMD1|adhalin	sarcoglycan alpha	protein-coding
110945	chr19	2840891	2842580	+	0	NA	intron (NM_001172775, intron 1 of 3)	CpG	260	NM_152791	148254		NM_152791	ENSG00000186300	ZNF555	-	zinc finger protein 555	protein-coding
218890	chr8	60651401	60652840	+	0	NA	Intergenic	CpG	-26620	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
147307	chr20	57703051	57703350	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	6815	NM_020182	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
139634	chr2	225988601	225988800	+	0	NA	Intergenic	L1MB7|LINE|L1	-154094	NR_046102	646736		NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
88918	chr16	87819551	87819850	+	0	NA	Intergenic	Intergenic	14960	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
193452	chr6	30498351	30499780	+	0	NA	Intergenic	SVA_B|Retroposon|SVA	9556	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
35046	chr11	586621	586980	+	0	NA	intron (NM_001286582, intron 3 of 17)	intron (NM_001286582, intron 3 of 17)	10330	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
121972	chr19	48488751	48489050	+	0	NA	intron (NM_001080434, intron 15 of 15)	AluSp|SINE|Alu	19531	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
34079	chr10	125061171	125061400	+	0	NA	intron (NM_001321013, intron 1 of 9)	intron (NM_001321013, intron 1 of 9)	-28415	NR_036178	100423041		NR_036178	ENSG00000264572	MIR4296	-	microRNA 4296	ncRNA
210195	chr7	98930371	98931600	+	0	NA	intron (NM_001375524, intron 25 of 72)	intron (NM_001375524, intron 25 of 72)	49288	NR_132754	106633801		NR_132754		SCARNA28	ZL1	small Cajal body-specific RNA 28	ncRNA
215713	chr8	1509571	1509730	+	0	NA	intron (NM_001346810, intron 4 of 14)	MIR|SINE|MIR	112014	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
977	chr1	1818001	1818200	+	0	NA	intron (NM_001282539, intron 2 of 10)	intron (NM_001282539, intron 2 of 10)	-38069	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
166905	chr3	124837171	124837330	+	0	NA	intron (NM_001354766, intron 5 of 13)	intron (NM_001354766, intron 5 of 13)	50115	NM_002213	3693		NM_002213	ENSG00000082781	ITGB5	-	integrin subunit beta 5	protein-coding
164844	chr3	71035901	71036100	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	28924	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
26238	chr10	14597521	14597880	+	0	NA	intron (NM_001282695, intron 2 of 5)	AluSz|SINE|Alu	6701	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
188109	chr5	150375921	150376180	+	0	NA	intron (NM_001371623, intron 12 of 26)	intron (NM_001371623, intron 12 of 26)	18353	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
212924	chr7	130917721	130919530	+	0	NA	intron (NR_109780, intron 3 of 3)	intron (NR_109780, intron 3 of 3)	5161	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
27592	chr10	32413521	32413800	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	32396	NR_120660	101929431		NR_120660		LOC101929431	-	uncharacterized LOC101929431	ncRNA
50546	chr12	47963301	47964300	+	0	NA	intron (NM_001143842, intron 1 of 7)	intron (NM_001143842, intron 1 of 7)	204	NM_001143842	79022		NM_024056	ENSG00000134291	TMEM106C	-	transmembrane protein 106C	protein-coding
112588	chr19	6674471	6675830	+	0	NA	Intergenic	Intergenic	-4562	NM_003807	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
57331	chr12	121695801	121696000	+	0	NA	Intergenic	L1MB7|LINE|L1	-16852	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
128273	chr2	54586021	54586280	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	27756	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
180581	chr5	14868301	14868500	+	0	NA	intron (NM_054027, intron 1 of 11)	AluSz|SINE|Alu	3378	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
37366	chr11	16606051	16606850	+	0	NA	intron (NM_001367872, intron 3 of 16)	intron (NM_001367872, intron 3 of 16)	-130062	NM_033326	55553		NM_017508	ENSG00000110693	SOX6	HSSOX6|SOXD|TOLCAS	SRY-box transcription factor 6	protein-coding
33640	chr10	119680801	119681000	+	0	NA	Intergenic	Intergenic	29520	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
211708	chr7	106864771	106865880	+	0	NA	promoter-TSS (NM_002649)	promoter-TSS (NM_002649)	43	NM_001282426	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
170744	chr3	188330221	188330480	+	0	NA	intron (NR_164692, intron 2 of 9)	intron (NR_164692, intron 2 of 9)	117454	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
166655	chr3	120026451	120026550	+	0	NA	intron (NM_001146156, intron 1 of 10)	intron (NM_001146156, intron 1 of 10)	58148	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
207434	chr7	44558471	44558630	+	0	NA	Intergenic	AluSx|SINE|Alu	15988	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
56677	chr12	120005321	120005600	+	0	NA	intron (NR_147894, intron 3 of 8)	AluSz6|SINE|Alu	15616	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
208622	chr7	72967951	72968400	+	0	NA	intron (NM_198924, intron 1 of 4)	AluSq|SINE|Alu	-1222	NM_001317815	378108		NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
222621	chr8	141075101	141075800	+	0	NA	Intergenic	Intergenic	-53139	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
26989	chr10	26782801	26783000	+	0	NA	intron (NR_145410, intron 2 of 11)	L1MB2|LINE|L1	78058	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
8444	chr1	40668551	40669580	+	0	NA	Intergenic	Intergenic	-3383	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
112976	chr19	7865371	7866230	+	0	NA	TTS (NM_001159944)	TTS (NM_001159944)	8590	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
48012	chr12	6931601	6932150	+	0	NA	intron (NM_001940, intron 1 of 9)	AluSq|SINE|Alu	3916	NM_001940	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
60799	chr13	45329321	45330500	+	0	NA	Intergenic	Intergenic	6537	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
79896	chr16	1579351	1579450	+	0	NA	intron (NM_014714, intron 13 of 30)	MLT1C|LTR|ERVL-MaLR	-1127	NR_135176	105371046		NR_135176	ENSG00000260989	LOC105371046	-	uncharacterized LOC105371046	ncRNA
49597	chr12	27279871	27280030	+	0	NA	intron (NM_015000, intron 1 of 13)	MIR|SINE|MIR	35664	NM_015000	23012		NM_015000	ENSG00000211455	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
44905	chr11	115201221	115201680	+	0	NA	intron (NM_001301045, intron 7 of 10)	intron (NM_001301045, intron 7 of 10)	-132127	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
29736	chr10	72106571	72108200	+	0	NA	intron (NM_001369102, intron 10 of 11)	intron (NM_001369102, intron 10 of 11)	-18353	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
161720	chr3	43894201	43894600	+	0	NA	Intergenic	Intergenic	-202806	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
182214	chr5	56845101	56845800	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	29901	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
147665	chr20	62289271	62289430	+	0	NA	intron (NM_144498, intron 12 of 13)	intron (NM_144498, intron 12 of 13)	-13546	NM_001281437	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
102838	chr17	76471121	76471850	+	0	NA	non-coding (NR_164785, exon 19 of 19)	non-coding (NR_164785, exon 19 of 19)	3882	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
184589	chr5	102868021	102868280	+	0	NA	intron (NR_033440, intron 2 of 23)	intron (NR_033440, intron 2 of 23)	2327	NR_033440	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
5565	chr1	25917001	25917200	+	0	NA	Intergenic	Intergenic	-10223	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
10293	chr1	64848371	64848530	+	0	NA	intron (NM_001321857, intron 12 of 24)	MLT1C|LTR|ERVL-MaLR	103375	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
166532	chr3	114746501	114747150	+	0	NA	intron (NM_001164343, intron 4 of 11)	intron (NM_001164343, intron 4 of 11)	-3300	NR_039959	100616166		NR_039959	ENSG00000264623	MIR4796	mir-4796	microRNA 4796	ncRNA
92437	chr17	8447971	8448130	+	0	NA	intron (NM_001025579, intron 4 of 9)	MER51A|LTR|ERV1	12166	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
7139	chr1	32207901	32208100	+	0	NA	exon (NM_001160042, exon 5 of 5)	exon (NM_001160042, exon 5 of 5)	-1094	NM_001099434	149069		NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
191629	chr6	12893721	12894180	+	0	NA	intron (NM_030948, intron 4 of 14)	intron (NM_030948, intron 4 of 14)	-63357	NM_001322311	221692		NM_030948	ENSG00000112137	PHACTR1	DEE70|EIEE70|RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
75950	chr15	70435471	70435630	+	0	NA	Intergenic	Intergenic	70378	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
63204	chr13	113816901	113817700	+	0	NA	TTS (NM_182614)	TTS (NM_182614)	1690	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
230572	chr9	128548251	128548550	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluJb|SINE|Alu	-4187	NM_001375318	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
117788	chr19	29836371	29836780	+	0	NA	Intergenic	Intergenic	24584	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
100768	chr17	63988201	63988400	+	0	NA	Intergenic	Intergenic	-10051	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
123992	chr19	55446571	55446930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3887	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
140852	chr2	237427971	237428700	+	0	NA	Intergenic	Intergenic	-14128	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
235438	chrX	45872251	45872750	+	0	NA	Intergenic	Intergenic	-21010	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
184660	chr5	107669271	107669650	+	0	NA	intron (NM_001962, intron 1 of 4)	CpG	1477	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
64115	chr14	22826371	22827150	+	0	NA	Intergenic	Intergenic	-3127	NM_001318870	122704		NM_178336	ENSG00000172590	MRPL52	mL52	mitochondrial ribosomal protein L52	protein-coding
11742	chr1	91950821	91951280	+	0	NA	intron (NM_001242810, intron 2 of 18)	FAM|SINE|Alu	-1102	NM_001726	676		NM_001726	ENSG00000137948	BRDT	BRD6|CT9|SPGF21	bromodomain testis associated	protein-coding
179983	chr5	879221	879480	+	0	NA	intron (NM_001375861, intron 11 of 16)	intron (NM_001375861, intron 11 of 16)	13172	NR_134296								
192071	chr6	16653201	16653630	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	106769	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
223142	chr8	143513621	143514180	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	-7652	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
157800	chr22	46788471	46789280	+	0	NA	intron (NM_001284305, intron 1 of 12)	intron (NM_001284305, intron 1 of 12)	14948	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
92955	chr17	17044701	17045750	+	0	NA	intron (NM_015134, intron 1 of 22)	MIR3|SINE|MIR	2768	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
40005	chr11	62645651	62647330	+	0	NA	TTS (NM_030628)	TTS (NM_030628)	123	NM_001278192	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
126859	chr2	31945271	31945630	+	0	NA	intron (NR_126034, intron 1 of 6)	L1ME3Cz|LINE|L1	65314	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
141030	chr2	238195751	238196380	+	0	NA	intron (NM_030768, intron 1 of 11)	intron (NM_030768, intron 1 of 11)	7630	NM_030768	80895		NM_030768	ENSG00000132323	ILKAP	ILKAP2|ILKAP3|PP2C-DELTA|PP2CD|PPM1O	ILK associated serine/threonine phosphatase	protein-coding
99732	chr17	50916001	50916600	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-48322	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
179212	chr4	173501071	173501630	+	0	NA	intron (NM_001329597, intron 1 of 3)	intron (NM_001329597, intron 1 of 3)	17794	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
119685	chr19	40974401	40974950	+	0	NA	Intergenic	MIR|SINE|MIR	-16607	NM_000767	1555		NM_000767	ENSG00000197408	CYP2B6	CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450	cytochrome P450 family 2 subfamily B member 6	protein-coding
205107	chr7	6845721	6846200	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-19685	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
135109	chr2	157406771	157407700	+	0	NA	Intergenic	AluSg7|SINE|Alu	-26726	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
33011	chr10	110617651	110618280	+	0	NA	Intergenic	Intergenic	-26371	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
151031	chr21	44547671	44548180	+	0	NA	intron (NM_144991, intron 2 of 11)	L1M4|LINE|L1	3580	NR_130165	386679		NM_198693	ENSG00000205445	KRTAP10-2	KAP10.2|KAP18-2|KAP18.2|KRTAP10.2|KRTAP18-2|KRTAP18.2	keratin associated protein 10-2	protein-coding
230465	chr9	128206621	128206950	+	0	NA	intron (NM_001374269, intron 1 of 21)	L2b|LINE|L2	-2563	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
105735	chr18	2733871	2734230	+	0	NA	intron (NM_015295, intron 25 of 47)	L4_A_Mam|LINE|RTE-X	78324	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
223099	chr8	143429821	143431580	+	0	NA	promoter-TSS (NM_201589)	promoter-TSS (NM_201589)	32	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
181261	chr5	39226121	39226380	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	-6687	NM_001349333	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
147801	chr20	62647351	62647650	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	4997	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
163193	chr3	50212021	50212800	+	0	NA	intron (NM_006841, intron 1 of 15)	intron (NM_006841, intron 1 of 15)	7139	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
11308	chr1	89295071	89295580	+	0	NA	Intergenic	Intergenic	-4963	NR_077244	729930		NR_077244		LOC729930	-	intraflagellar transport associated protein pseudogene	pseudo
149768	chr21	34807251	34808000	+	0	NA	intron (NM_001754, intron 7 of 8)	intron (NM_001754, intron 7 of 8)	61800	NR_038886	100506385		NR_038885	ENSG00000234380	LINC01426	lincRNA-uc002yug.2	long intergenic non-protein coding RNA 1426	ncRNA
159498	chr3	14261201	14261480	+	0	NA	Intergenic	Intergenic	82523	NM_014463	27258		NM_014463	ENSG00000170860	LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
119418	chr19	40279071	40279530	+	0	NA	intron (NM_001243027, intron 1 of 13)	intron (NM_001243027, intron 1 of 13)	3341	NR_030371	693226		NR_030371	ENSG00000207631	MIR641	MIRN641|hsa-mir-641|mir-641	microRNA 641	ncRNA
151304	chr21	45541151	45542000	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	271	NM_001352512	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
198727	chr6	108260331	108261850	+	0	NA	promoter-TSS (NM_003795)	promoter-TSS (NM_003795)	-50	NM_001300929	8724		NM_003795	ENSG00000112335	SNX3	Grd19|MCOPS8|SDP3	sorting nexin 3	protein-coding
109852	chr19	1222471	1222630	+	0	NA	intron (NM_000455, intron 7 of 9)	intron (NM_000455, intron 7 of 9)	15455	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
89785	chr16	89481321	89481950	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	8926	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
105869	chr18	3153021	3153480	+	0	NA	intron (NM_019856, intron 11 of 36)	MIRb|SINE|MIR	66718	NM_019856	8736		NM_003803	ENSG00000101605	MYOM1	SKELEMIN	myomesin 1	protein-coding
235867	chrX	51394921	51395180	+	0	NA	Intergenic	Intergenic	-11898	NM_203407	340602		NM_203407	ENSG00000187690	EZHIP	CATACOMB|CXorf67|KIP75	EZH inhibitory protein	protein-coding
18484	chr1	161629601	161629800	+	0	NA	intron (NM_001244753, intron 3 of 4)	intron (NM_001244753, intron 3 of 4)	1347	NM_001271036	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
154617	chr22	36307151	36307600	+	0	NA	intron (NM_002473, intron 15 of 40)	intron (NM_002473, intron 15 of 40)	-20468	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
114697	chr19	13132301	13133200	+	0	NA	intron (NM_052876, intron 1 of 5)	L1M2|LINE|L1	14486	NM_052876	112939		NM_052876	ENSG00000160877	NACC1	BEND8|BTBD14B|BTBD30|NAC-1|NAC1|NECFM	nucleus accumbens associated 1	protein-coding
184948	chr5	113021851	113021950	+	0	NA	TTS (NM_002387)	TTS (NM_002387)	45102	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
203526	chr7	812321	813590	+	0	NA	Intergenic	Intergenic	-2602	NM_001171946	23353		NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
116833	chr19	18574901	18575600	+	0	NA	3' UTR (NM_001033930, exon 5 of 5)	3' UTR (NM_001033930, exon 5 of 5)	2410	NM_001321021	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
163342	chr3	50426571	50426730	+	0	NA	intron (NM_006030, intron 3 of 37)	intron (NM_006030, intron 3 of 37)	61287	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
14737	chr1	145988401	145989230	+	0	NA	Intergenic	Intergenic	6929	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
24644	chr1	246837551	246837850	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	48083	NR_015422	149134		NM_207326		LINC01341	-	long intergenic non-protein coding RNA 1341	ncRNA
232469	chr9	136201671	136202450	+	0	NA	promoter-TSS (NM_001363746)	promoter-TSS (NM_001363746)	-386	NM_001363746	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
102467	chr17	75723301	75723780	+	0	NA	intron (NM_000213, intron 1 of 39)	intron (NM_000213, intron 1 of 39)	-1156	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
158007	chr22	49880251	49880980	+	0	NA	intron (NM_014838, intron 1 of 1)	L1MEc|LINE|L1	26771	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
223393	chr8	143919151	143919250	+	0	NA	exon (NM_000445, exon 33 of 33)	exon (NM_000445, exon 33 of 33)	20397	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
238593	chrX	153904771	153905450	+	0	NA	non-coding (NR_027419, exon 2 of 4)	non-coding (NR_027419, exon 2 of 4)	396	NM_001146151	554		NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|NDI1|V2R	arginine vasopressin receptor 2	protein-coding
74039	chr15	52331451	52331950	+	0	NA	intron (NM_001382348, intron 35 of 42)	intron (NM_001382348, intron 35 of 42)	-35896	NM_018728	55930		NM_018728	ENSG00000128833	MYO5C	-	myosin VC	protein-coding
101594	chr17	68092401	68092800	+	0	NA	Intergenic	AluSx|SINE|Alu	-8955	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
149796	chr21	34952771	34952930	+	0	NA	intron (NM_001754, intron 2 of 8)	MIRb|SINE|MIR	-64151	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
47251	chr12	1202921	1203630	+	0	NA	intron (NM_178039, intron 11 of 17)	AluSx|SINE|Alu	175527	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
159466	chr3	14134501	14134700	+	0	NA	intron (NM_024334, intron 7 of 11)	intron (NM_024334, intron 7 of 11)	9548	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
59699	chr13	29589771	29590750	+	0	NA	intron (NM_003045, intron 1 of 12)	intron (NM_003045, intron 1 of 12)	5428	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
83756	chr16	28701371	28701530	+	0	NA	intron (NM_001199142, intron 1 of 20)	intron (NM_001199142, intron 1 of 20)	-9967	NM_001037808	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
87554	chr16	71932271	71933050	+	0	NA	intron (NM_181536, intron 28 of 29)	AluSz|SINE|Alu	37129	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
86498	chr16	67034451	67035000	+	0	NA	intron (NM_001368707, intron 2 of 4)	intron (NM_001368707, intron 2 of 4)	5576	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
148287	chr20	63704351	63704450	+	0	NA	intron (NM_003224, intron 4 of 7)	intron (NM_003224, intron 4 of 7)	-3042	NM_001083113	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
171579	chr3	197002471	197004300	+	0	NA	exon (NM_005929, exon 16 of 16)	exon (NM_005929, exon 16 of 16)	479	NR_038285	100507057		NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1|PLANE	MELTF antisense RNA 1	ncRNA
208400	chr7	66694451	66694880	+	0	NA	intron (NM_001367745, intron 1 of 7)	intron (NM_001367745, intron 1 of 7)	12499	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
224625	chr9	20551951	20552050	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	-49658	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
85362	chr16	50265051	50265550	+	0	NA	Intergenic	Intergenic	-1251	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
180306	chr5	5480851	5481550	+	0	NA	intron (NM_015325, intron 17 of 18)	intron (NM_015325, intron 17 of 18)	58523	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
131895	chr2	98749271	98749430	+	0	NA	Intergenic	Intergenic	-18218	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
70288	chr14	101763351	101763850	+	0	NA	intron (NM_001352915, intron 2 of 14)	AluSx1|SINE|Alu	1230	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
193920	chr6	31637971	31638580	+	0	NA	TTS (NM_001199698)	TTS (NM_001199698)	4488	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
78970	chr15	101500801	101501000	+	0	NA	Intergenic	Intergenic	-10916	NM_138324	5046		NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
141217	chr2	239384801	239385000	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	16120	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
221046	chr8	116754401	116754730	+	0	NA	intron (NM_003756, intron 1 of 7)	MIR|SINE|MIR	1258	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
86105	chr16	57654101	57654300	+	0	NA	intron (NM_001370440, intron 6 of 14)	intron (NM_001370440, intron 6 of 14)	-14106	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
87042	chr16	68284871	68285450	+	0	NA	intron (NM_001076785, intron 4 of 11)	intron (NM_001076785, intron 4 of 11)	20634	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
5867	chr1	26742951	26743050	+	0	NA	intron (NM_139135, intron 4 of 19)	intron (NM_139135, intron 4 of 19)	-44054	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
71773	chr15	21280221	21280480	+	0	NA	Intergenic	LTR84b|LTR|ERVL	17479	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
22471	chr1	221710201	221710400	+	0	NA	intron (NR_111940, intron 1 of 2)	MIR|SINE|MIR	26600	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
79351	chr16	603201	603400	+	0	NA	intron (NM_001172664, intron 2 of 6)	intron (NM_001172664, intron 2 of 6)	13223	NM_001172665	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
70939	chr14	104604721	104604980	+	0	NA	promoter-TSS (NM_001286390)	promoter-TSS (NM_001286390)	-78	NM_001286389	388021		NM_207379	ENSG00000258986	TMEM179	C14orf90|TMEM179A	transmembrane protein 179	protein-coding
154789	chr22	36781751	36782580	+	0	NA	Intergenic	Intergenic	-6046	NR_033531	11020		NM_006860	ENSG00000100360	IFT27	BBS19|CFAP156|FAP156|RABL4|RAYL	intraflagellar transport 27	protein-coding
113245	chr19	8495801	8496230	+	0	NA	intron (NM_032152, intron 4 of 9)	intron (NM_032152, intron 4 of 9)	6625	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
45394	chr11	118332401	118333250	+	0	NA	Intergenic	AluJo|SINE|Alu	9880	NM_000732	915		NM_000732	ENSG00000167286	CD3D	CD3-DELTA|CD3DELTA|IMD19|T3D	CD3 delta subunit of T-cell receptor complex	protein-coding
100796	chr17	64028051	64028250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7516	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
3164	chr1	12616101	12617200	+	0	NA	5' UTR (NM_001319225, exon 1 of 6)	5' UTR (NM_001319225, exon 1 of 6)	139	NM_001319225	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
145518	chr20	44066701	44066900	+	0	NA	exon (NM_001098796, exon 8 of 9)	exon (NM_001098796, exon 8 of 9)	120388	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
12158	chr1	100277851	100278150	+	0	NA	intron (NM_001130841, intron 9 of 11)	L1MC4|LINE|L1	-3241	NR_030279	693138		NR_030279	ENSG00000207750	MIR553	MIRN553|hsa-mir-553	microRNA 553	ncRNA
158166	chr22	50208751	50209050	+	0	NA	intron (NM_031454, intron 3 of 8)	intron (NM_031454, intron 3 of 8)	7889	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
27286	chr10	30359401	30360200	+	0	NA	Intergenic	Intergenic	8865	NR_106985	102466227		NR_106985	ENSG00000284277	MIR7162	hsa-mir-7162	microRNA 7162	ncRNA
211599	chr7	105848871	105850180	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	27060	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
26483	chr10	17681821	17682280	+	0	NA	intron (NM_001324285, intron 3 of 14)	L1ME1|LINE|L1	37899	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
50278	chr12	46360771	46361280	+	0	NA	3' UTR (NM_018976, exon 16 of 16)	3' UTR (NM_018976, exon 16 of 16)	11748	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
58980	chr13	19953001	19953200	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-4323	NM_001353164	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
166911	chr3	124995371	124996200	+	0	NA	intron (NM_020733, intron 12 of 16)	intron (NM_020733, intron 12 of 16)	60212	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
90520	chr17	1471821	1472080	+	0	NA	exon (NM_001080950, exon 19 of 32)	exon (NM_001080950, exon 19 of 32)	13451	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
227320	chr9	89438901	89439130	+	0	NA	intron (NM_001371200, intron 2 of 20)	AluSx1|SINE|Alu	40875	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
140956	chr2	237873521	237873780	+	0	NA	intron (NM_005855, intron 1 of 2)	intron (NM_005855, intron 1 of 2)	14027	NM_005855	10267		NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding
23964	chr1	235158371	235158530	+	0	NA	intron (NR_144491, intron 2 of 9)	intron (NR_144491, intron 2 of 9)	2800	NR_027762	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
123896	chr19	55333971	55334530	+	0	NA	Intergenic	Intergenic	-5626	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
22270	chr1	212698571	212700000	+	0	NA	intron (NM_018664, intron 1 of 2)	CpG	555	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
112872	chr19	7610421	7610680	+	0	NA	exon (NM_001080429, exon 8 of 19)	exon (NM_001080429, exon 8 of 19)	-6889	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
7868	chr1	36387701	36388080	+	0	NA	Intergenic	Intergenic	-1966	NM_001282546	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
51783	chr12	53349671	53349830	+	0	NA	Intergenic	AluSx|SINE|Alu	-4957	NM_001300837	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
185416	chr5	129943751	129943850	+	0	NA	intron (NM_175856, intron 2 of 2)	intron (NM_175856, intron 2 of 2)	39335	NM_175856	337876		NM_175856	ENSG00000198108	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
226056	chr9	61665451	61665550	+	0	NA	Intergenic	SST1|Satellite|centr	-188584	NR_027421	100132948		NM_001024942	ENSG00000231527	FAM27C	FAM27A|FAM27A1|FAM27A3|bA7G23.5	family with sequence similarity 27 member C	ncRNA
10744	chr1	76285001	76285200	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	210354	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
20637	chr1	199684671	199684930	+	0	NA	Intergenic	Intergenic	-342910	NM_003822	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
141503	chr2	241127351	241128450	+	0	NA	intron (NM_001252124, intron 9 of 13)	intron (NM_001252124, intron 9 of 13)	21572	NM_001252122	23178		NM_015148	ENSG00000115687	PASK	PASKIN|STK37	PAS domain containing serine/threonine kinase	protein-coding
71113	chr14	104925921	104926430	+	0	NA	intron (NM_138790, intron 1 of 10)	intron (NM_138790, intron 1 of 10)	1296	NM_001308174	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
233045	chr9	137050871	137051030	+	0	NA	exon (NM_001246, exon 5 of 9)	exon (NM_001246, exon 5 of 9)	3111	NM_001246	954		NM_001246	ENSG00000054179	ENTPD2	CD39L1|NTPDase-2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding
27073	chr10	27235771	27236150	+	0	NA	intron (NM_001352582, intron 2 of 11)	AluJb|SINE|Alu	4526	NM_001301252	91452		NM_145698	ENSG00000107897	ACBD5	RDLKD	acyl-CoA binding domain containing 5	protein-coding
86604	chr16	67311771	67311930	+	0	NA	intron (NM_001100915, intron 2 of 15)	intron (NM_001100915, intron 2 of 15)	14891	NM_001100915	146212		NM_001100915	ENSG00000168676	KCTD19	-	potassium channel tetramerization domain containing 19	protein-coding
4242	chr1	19582121	19582780	+	0	NA	Intergenic	Intergenic	14382	NR_135054	105378614		NR_135054	ENSG00000235185	MICOS10-DT	-	MICOS10 divergent transcript	ncRNA
12851	chr1	110071351	110071830	+	0	NA	promoter-TSS (NM_006492)	promoter-TSS (NM_006492)	-918	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
13331	chr1	113791351	113791650	+	0	NA	intron (NM_018364, intron 2 of 6)	intron (NM_018364, intron 2 of 6)	20976	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
177226	chr4	108532171	108532730	+	0	NA	Intergenic	Intergenic	-24783	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
134694	chr2	144488701	144489080	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-30724	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
236161	chrX	64394471	64395750	+	0	NA	intron (NM_017677, intron 1 of 13)	CpG	342	NM_017677	55613		NM_017677	ENSG00000102043	MTMR8	-	myotubularin related protein 8	protein-coding
221824	chr8	128050571	128050950	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	1608	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
215864	chr8	7505351	7505530	+	0	NA	intron (NM_001040705, intron 1 of 1).3	HERVK-int|LTR|ERVK	9529	NM_001040705	503614		NM_001040705	ENSG00000198129	DEFB107B	HsT21816	defensin beta 107B	protein-coding
216336	chr8	13544951	13545050	+	0	NA	intron (NM_001348081, intron 1 of 17)	MER91C|DNA|hAT-Tip100	-21869	NM_001007090	157773		NM_001007090	ENSG00000164743	C8orf48	-	chromosome 8 open reading frame 48	protein-coding
140606	chr2	233408401	233408800	+	0	NA	intron (NM_003648, intron 2 of 28)	MIRc|SINE|MIR	-10612	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
205098	chr7	6753301	6753500	+	0	NA	promoter-TSS (NM_001099697).2	promoter-TSS (NM_001099697).2	-709	NM_001099697	728194		NM_001099697	ENSG00000169402	RSPH10B2	-	radial spoke head 10 homolog B2	protein-coding
81000	chr16	4107951	4108250	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	8342	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
406	chr1	1065721	1066080	+	0	NA	non-coding (NR_148960, exon 4 of 4)	non-coding (NR_148960, exon 4 of 4)	3437	NR_168433	105378948		NR_168432		LOC105378948	-	uncharacterized LOC105378948	ncRNA
237406	chrX	119604501	119604900	+	0	NA	intron (NR_163972, intron 1 of 3)	(AAAACA)n|Simple_repeat|Simple_repeat	1724	NM_017544	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
37381	chr11	16945901	16946180	+	0	NA	intron (NM_175058, intron 3 of 22)	intron (NM_175058, intron 3 of 22)	-20018	NR_145810	109623465		NR_145810		SNORD147	-	small nucleolar RNA, C/D box 147	snoRNA
152957	chr22	22954701	22955230	+	0	NA	Intergenic	LTR41C|LTR|ERVL	67149	NM_001178126	100423062		NM_001178126	ENSG00000254709	IGLL5	IGL|IGLV|VL-MAR	immunoglobulin lambda like polypeptide 5	protein-coding
162240	chr3	47161501	47162330	+	0	NA	intron (NR_146158, intron 1 of 21)	AluJr|SINE|Alu	2198	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
62663	chr13	102580201	102581180	+	0	NA	Intergenic	Intergenic	-16296	NM_003291	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
51128	chr12	50106971	50107530	+	0	NA	intron (NM_005276, intron 5 of 7)	intron (NM_005276, intron 5 of 7)	3242	NM_005276	2819		NM_005276	ENSG00000167588	GPD1	GPD-C|GPDH-C|HTGTI	glycerol-3-phosphate dehydrogenase 1	protein-coding
225655	chr9	36399971	36401950	+	0	NA	promoter-TSS (NM_022781)	promoter-TSS (NM_022781)	-37	NM_194332	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
18767	chr1	167507201	167507400	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	11229	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
97282	chr17	43032101	43032300	+	0	NA	TTS (NM_005440)	TTS (NM_005440)	6969	NM_005440	8153		NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
47450	chr12	3748621	3748880	+	0	NA	intron (NM_032680, intron 1 of 10)	intron (NM_032680, intron 1 of 10)	4359	NM_032680	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
65984	chr14	57271071	57271230	+	0	NA	intron (NR_026895, intron 1 of 6)	L1ME5|LINE|L1	2179	NM_018229	55745		NM_018229	ENSG00000053770	AP5M1	C14orf108|MUDENG|Mu5|MuD	adaptor related protein complex 5 subunit mu 1	protein-coding
78069	chr15	90190851	90191150	+	0	NA	promoter-TSS (NM_001324031)	promoter-TSS (NM_001324031)	-921	NM_001324031	10509		NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
109956	chr19	1380401	1380600	+	0	NA	Intergenic	Intergenic	-3407	NM_024407	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
178521	chr4	150952201	150952700	+	0	NA	intron (NM_001367550, intron 2 of 56)	intron (NM_001367550, intron 2 of 56)	62817	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
30325	chr10	76035851	76035950	+	0	NA	intron (NR_131178, intron 3 of 7)	intron (NR_131178, intron 3 of 7)	253139	NM_032024	83938		NM_032024	ENSG00000148655	LRMDA	C10orf11|CDA017	leucine rich melanocyte differentiation associated	protein-coding
152607	chr22	21407151	21407750	+	0	NA	Intergenic	L2c|LINE|L2	-9921	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
186088	chr5	134109771	134109930	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-4831	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
24145	chr1	235850201	235850400	+	0	NA	intron (NM_001301365, intron 1 of 52)	L1PB1|LINE|L1	2760	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
51821	chr12	53444901	53445680	+	0	NA	intron (NM_001005354, intron 3 of 3)	AluSx3|SINE|Alu	3556	NM_018457	54458		NM_018457	ENSG00000205352	PRR13	TXR1	proline rich 13	protein-coding
55829	chr12	108860601	108861000	+	0	NA	Intergenic	Intergenic	-3217	NM_001161330	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
225905	chr9	39875451	39875550	+	0	NA	promoter-TSS (NR_003670)	promoter-TSS (NR_003670)	-934	NR_003670	654466		NM_001039113	ENSG00000291181	FGF7P3	KGFLP2	fibroblast growth factor 7 pseudogene 3	pseudo
134793	chr2	147863021	147863900	+	0	NA	intron (NM_001278579, intron 2 of 11)	Tigger2a|DNA|TcMar-Tigger	18431	NM_001616	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
87235	chr16	69706971	69707530	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	1425	NR_145753	109617018		NR_145753		SNORD13H	-	small nucleolar RNA, C/D box 13H	snoRNA
123437	chr19	54125101	54125300	+	0	NA	intron (NM_015629, intron 8 of 13)	intron (NM_015629, intron 8 of 13)	9446	NM_015629	26121		NM_015629	ENSG00000105618	PRPF31	NY-BR-99|PRP31|RP11|SNRNP61	pre-mRNA processing factor 31	protein-coding
198358	chr6	105398971	105399350	+	0	NA	intron (NM_002726, intron 1 of 14)	intron (NM_002726, intron 1 of 14)	3922	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
209100	chr7	74883801	74884530	+	0	NA	non-coding (NR_040584, exon 5 of 8)	non-coding (NR_040584, exon 5 of 8)	6447	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
197993	chr6	90068351	90068650	+	0	NA	intron (NM_021813, intron 5 of 8)	MIRc|SINE|MIR	174031	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
109606	chr19	935021	935280	+	0	NA	intron (NM_005224, intron 3 of 8)	intron (NM_005224, intron 3 of 8)	9115	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
30473	chr10	79202571	79202800	+	0	NA	intron (NM_020338, intron 5 of 24)	intron (NM_020338, intron 5 of 24)	133719	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
198671	chr6	107866821	107867400	+	0	NA	TTS (NM_007214)	TTS (NM_007214)	-42797	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
213546	chr7	139100151	139101650	+	0	NA	intron (NM_020119, intron 1 of 12)	SVA_C|Retroposon|SVA	8820	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
2640	chr1	10337871	10338290	+	0	NA	intron (NM_001365952, intron 31 of 48)	intron (NM_001365952, intron 31 of 48)	39114	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
17700	chr1	158203801	158204300	+	0	NA	Intergenic	Intergenic	23155	NM_001371761	912		NM_001766	ENSG00000158473	CD1D	CD1A|R3|R3G1	CD1d molecule	protein-coding
121849	chr19	48206171	48206850	+	0	NA	non-coding (NR_147707, exon 10 of 11)	non-coding (NR_147707, exon 10 of 11)	34553	NR_033679	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
73020	chr15	40767851	40768150	+	0	NA	TTS (NM_005258)	TTS (NM_005258)	-1980	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
162573	chr3	48664971	48665130	+	0	NA	intron (NR_111921, intron 1 of 2)	L2b|LINE|L2	1282	NR_111921	102724368		NR_111921	ENSG00000228350	LINC02585	CELSR3-AS1	long intergenic non-protein coding RNA 2585	ncRNA
183933	chr5	87406871	87407480	+	0	NA	intron (NM_001239, intron 4 of 8)	L2b|LINE|L2	5729	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
206665	chr7	36304821	36304900	+	0	NA	Intergenic	Intergenic	62380	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
82587	chr16	18793601	18794100	+	0	NA	intron (NM_015161, intron 5 of 5)	AluSq2|SINE|Alu	-3516	NM_001030009	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
5170	chr1	24933271	24933730	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-3224	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
78603	chr15	93153271	93153430	+	0	NA	Intergenic	Intergenic	-52716	NM_001365393								
75626	chr15	67148121	67148730	+	0	NA	intron (NM_001145103, intron 1 of 8)	intron (NM_001145103, intron 1 of 8)	10404	NM_001145103	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
23328	chr1	228098551	228098880	+	0	NA	3' UTR (NM_001658, exon 5 of 5)	3' UTR (NM_001658, exon 5 of 5)	1452	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
62009	chr13	82689571	82689730	+	0	NA	Intergenic	Intergenic	1192743	NM_052910	114798		NM_052910	ENSG00000178235	SLITRK1	LRRC12|TTM	SLIT and NTRK like family member 1	protein-coding
84897	chr16	31204401	31205700	+	0	NA	Intergenic	L2|LINE|L2	-2274	NM_145182	29108		NM_013258	ENSG00000103490	PYCARD	ASC|CARD5|TMS|TMS-1|TMS1	PYD and CARD domain containing	protein-coding
25884	chr10	11263571	11264100	+	0	NA	intron (NM_001326346, intron 4 of 11)	intron (NM_001326346, intron 4 of 11)	80839	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
164277	chr3	57581401	57582000	+	0	NA	intron (NM_001660, intron 3 of 5)	AluSx|SINE|Alu	15644	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
172146	chr4	1200811	1202980	+	0	NA	intron (NR_024569, intron 2 of 3)	intron (NR_024569, intron 2 of 3)	7067	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
167120	chr3	127678051	127678500	+	0	NA	intron (NM_172027, intron 10 of 11)	intron (NM_172027, intron 10 of 11)	5323	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
118118	chr19	34712701	34712900	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-21443	NM_001145665	339318		NM_001029997	ENSG00000197841	ZNF181	HHZ181	zinc finger protein 181	protein-coding
175032	chr4	52715671	52715830	+	0	NA	intron (NR_145129, intron 4 of 4)	intron (NR_145129, intron 4 of 4)	2501	NR_003016	677810		NR_003016	ENSG00000212588	SNORA26	HBI-6	small nucleolar RNA, H/ACA box 26	snoRNA
158198	chr22	50243801	50245880	+	0	NA	TTS (NM_032019)	TTS (NM_032019)	183	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
173708	chr4	15756171	15757250	+	0	NA	Intergenic	Intergenic	-21618	NM_001775	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
42760	chr11	72736021	72737400	+	0	NA	intron (NM_001040118, intron 1 of 34)	intron (NM_001040118, intron 1 of 34)	-14352	NM_001135190	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
12396	chr1	101291671	101292330	+	0	NA	Intergenic	L2c|LINE|L2	-31837	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
144360	chr20	35069671	35070630	+	0	NA	intron (NM_199368, intron 2 of 18)	MLT1G1|LTR|ERVL-MaLR	22657	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
123868	chr19	55270751	55271130	+	0	NA	intron (NM_001130106, intron 5 of 8)	(CA)n|Simple_repeat|Simple_repeat	8916	NM_001297600	23640		NM_012267	ENSG00000133265	HSPBP1	FES1	HSPA (Hsp70) binding protein 1	protein-coding
227577	chr9	92324471	92324630	+	0	NA	promoter-TSS (NM_001286969)	promoter-TSS (NM_001286969)	800	NM_017948	55035		NM_017948	ENSG00000198000	NOL8	C9orf34|NOP132|bA62C3.3|bA62C3.4	nucleolar protein 8	protein-coding
111188	chr19	3433301	3433750	+	0	NA	exon (NM_001245005, exon 4 of 10)	exon (NM_001245005, exon 4 of 10)	47000	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
206801	chr7	36863871	36864700	+	0	NA	intron (NM_014800, intron 20 of 21)	intron (NM_014800, intron 20 of 21)	55147	NR_031604	100302113		NR_031604	ENSG00000221325	MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA
154361	chr22	33492221	33492680	+	0	NA	intron (NM_133642, intron 6 of 14)	MIRb|SINE|MIR	-55781	NR_039921	100616295		NR_039921	ENSG00000266012	MIR4764	-	microRNA 4764	ncRNA
64775	chr14	34672251	34672950	+	0	NA	Intergenic	Intergenic	41217	NM_021914	1073		NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding
42795	chr11	72786901	72788130	+	0	NA	intron (NM_006645, intron 1 of 6)	intron (NM_006645, intron 1 of 6)	3985	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
103225	chr17	77489971	77490130	+	0	NA	intron (NM_001293697, intron 5 of 9)	intron (NM_001293697, intron 5 of 9)	14415	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
83548	chr16	28062821	28063980	+	0	NA	exon (NM_001323900, exon 1 of 8)	exon (NM_001323900, exon 1 of 8)	314	NM_001109763	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
205066	chr7	6616951	6617050	+	0	NA	intron (NM_017560, intron 1 of 2)	intron (NM_017560, intron 1 of 2)	1390	NM_001353546	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
187365	chr5	141814071	141814300	+	0	NA	Intergenic	Intergenic	52017	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
90671	chr17	1710901	1711700	+	0	NA	promoter-TSS (NM_001164407)	promoter-TSS (NM_001164407)	-923	NM_001164407	727910		NM_001164407	ENSG00000185561	TLCD2	-	TLC domain containing 2	protein-coding
184204	chr5	95907201	95908130	+	0	NA	intron (NM_012081, intron 4 of 11)	intron (NM_012081, intron 4 of 11)	54186	NM_012081	22936		NM_012081	ENSG00000118985	ELL2	MRCCAT1	elongation factor for RNA polymerase II 2	protein-coding
63864	chr14	21714151	21715030	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-43573	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
64614	chr14	30690471	30690900	+	0	NA	intron (NM_001257376, intron 12 of 22)	L1HS|LINE|L1	68366	NM_001257376	23256		NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
55595	chr12	106749451	106749550	+	0	NA	intron (NM_213594, intron 16 of 17)	intron (NM_213594, intron 16 of 17)	-25182	NM_001351363	55188		NM_018157	ENSG00000111785	RIC8B	RIC8|hSyn	RIC8 guanine nucleotide exchange factor B	protein-coding
222777	chr8	141983021	141984230	+	0	NA	Intergenic	Intergenic	-192714	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
66676	chr14	63936551	63936850	+	0	NA	intron (NM_015180, intron 2 of 114)	L2a|LINE|L2	83696	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
170175	chr3	183655371	183655730	+	0	NA	intron (NM_001349429, intron 4 of 8)	AluJo|SINE|Alu	19927	NR_146170	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
70433	chr14	102040101	102040500	+	0	NA	exon (NM_001376, exon 63 of 78)	exon (NM_001376, exon 63 of 78)	46744	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
164026	chr3	53249551	53250350	+	0	NA	intron (NM_001064, intron 1 of 13)	intron (NM_001064, intron 1 of 13)	6072	NM_001064	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
150369	chr21	42221471	42221630	+	0	NA	intron (NM_207174, intron 1 of 14)	intron (NM_207174, intron 1 of 14)	1652	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
30060	chr10	73854351	73854650	+	0	NA	intron (NM_172173, intron 3 of 19)	intron (NM_172173, intron 3 of 19)	20055	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
167674	chr3	130026321	130026780	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	51830	NM_007117	7200		NM_007117	ENSG00000170893	TRH	Pro-TRH|TRF	thyrotropin releasing hormone	protein-coding
87313	chr16	70186971	70187550	+	0	NA	TTS (NM_173619)	TTS (NM_173619)	-1062	NR_135173	105371328		NR_135173		LOC105371328	-	uncharacterized LOC105371328	ncRNA
43954	chr11	93704451	93704550	+	0	NA	intron (NM_033395, intron 17 of 29)	AluJb|SINE|Alu	-17014	NR_002569	619383		NR_002569	ENSG00000254911	SCARNA9	Z32|mgU2-19/30	small Cajal body-specific RNA 9	ncRNA
49749	chr12	31732851	31733500	+	0	NA	Intergenic	LTR33|LTR|ERVL	-4001	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
60547	chr13	41471001	41471600	+	0	NA	TTS (NM_014059)	TTS (NM_014059)	13750	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
69658	chr14	97976641	97977180	+	0	NA	intron (NR_152748, intron 1 of 2)	intron (NR_152748, intron 1 of 2)	1214	NR_015430	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
217108	chr8	24944151	24944450	+	0	NA	Intergenic	AluSx1|SINE|Alu	9567	NR_106900	102465506		NR_106900	ENSG00000283327	MIR6841	hsa-mir-6841	microRNA 6841	ncRNA
55560	chr12	106110951	106111450	+	0	NA	intron (NM_014840, intron 1 of 6)	MIRb|SINE|MIR	28833	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
76687	chr15	75736051	75736800	+	0	NA	intron (NR_024595, intron 3 of 4)	intron (NR_024595, intron 3 of 4)	3652	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
30095	chr10	73953721	73954050	+	0	NA	Intergenic	Intergenic	-31108	NR_160938	414236		NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 putative open reading frame 55	ncRNA
105619	chr18	792321	792780	+	0	NA	intron (NM_005433, intron 1 of 11)	(TC)n|Simple_repeat|Simple_repeat	19692	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
168448	chr3	142944301	142945180	+	0	NA	Intergenic	L2b|LINE|L2	18065	NR_038455	100507389		NR_038455	ENSG00000243818	HLMR1	-	hepatic lncRNA metabolic regulator 1	ncRNA
161645	chr3	43311501	43311700	+	0	NA	intron (NM_017719, intron 3 of 6)	intron (NM_017719, intron 3 of 6)	25060	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
235617	chrX	48015151	48015250	+	0	NA	Intergenic	L1ME3A|LINE|L1	7459	NM_001079900	729201		NM_001079900	ENSG00000171478	SPACA5B	LYZL5B	sperm acrosome associated 5B	protein-coding
228021	chr9	95809721	95810180	+	0	NA	non-coding (NR_023390, exon 3 of 3)	non-coding (NR_023390, exon 3 of 3)	-65741	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
64255	chr14	23180771	23181130	+	0	NA	intron (NM_012244, intron 1 of 10)	AluY|SINE|Alu	2710	NM_012244	23428		NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
202022	chr6	152948021	152948680	+	0	NA	Intergenic	Intergenic	34691	NM_012177	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
206307	chr7	30163211	30163930	+	0	NA	TTS (NM_152793)	TTS (NM_152793)	28584	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
136309	chr2	174901001	174901450	+	0	NA	intron (NM_001371514, intron 5 of 12)	L2c|LINE|L2	-53670	NM_001206602	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
154867	chr22	37132951	37133050	+	0	NA	intron (NM_000878, intron 8 of 9)	MER91A|DNA|hAT-Tip100	16916	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
75448	chr15	65822451	65823350	+	0	NA	Intergenic	AluSx4|SINE|Alu	-30607	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
117439	chr19	19653471	19653830	+	0	NA	intron (NM_020410, intron 15 of 25)	intron (NM_020410, intron 15 of 25)	-9993	NM_001288999	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
106231	chr18	11910771	11910930	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2533	NR_040242	65258		NM_023075	ENSG00000154889	MPPE1	Cdc1|PGAP5	metallophosphoesterase 1	protein-coding
1676	chr1	3928851	3929550	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-11412	NR_040065	728716		NR_040065		LINC01346	-	long intergenic non-protein coding RNA 1346	ncRNA
34960	chr11	491251	491950	+	0	NA	TTS (NM_001329544).2	TTS (NM_001329544).2	15168	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
144736	chr20	36584021	36584930	+	0	NA	intron (NM_001199535, intron 2 of 4)	intron (NM_001199535, intron 2 of 4)	9921	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
235789	chrX	49164971	49165500	+	0	NA	exon (NM_001099681, exon 4 of 5)	exon (NM_001099681, exon 4 of 5)	2392	NM_024859	79917		NM_024859	ENSG00000269313	MAGIX	JM10|PDZX	MAGI family member, X-linked	protein-coding
167773	chr3	133004971	133005150	+	0	NA	Intergenic	L1P1|LINE|L1	-33228	NM_001136469	66000		NM_023943	ENSG00000144868	TMEM108	CT124|RTLN	transmembrane protein 108	protein-coding
105787	chr18	2883021	2883900	+	0	NA	intron (NM_032048, intron 2 of 7)	intron (NM_032048, intron 2 of 7)	36454	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
143256	chr20	25071801	25072200	+	0	NA	exon (NM_001256271, exon 4 of 4)	exon (NM_001256271, exon 4 of 4)	6052	NR_165183	30813		NM_014588	ENSG00000100987	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
187607	chr5	142950901	142951300	+	0	NA	intron (NR_146198, intron 11 of 22)	AluSz|SINE|Alu	-82190	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
88141	chr16	81626301	81627230	+	0	NA	intron (NM_030629, intron 3 of 20)	(TG)n|Simple_repeat|Simple_repeat	15417	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
19163	chr1	171741271	171742700	+	0	NA	promoter-TSS (NM_003762)	promoter-TSS (NM_003762)	80	NM_003762	8674		NM_003762	ENSG00000117533	VAMP4	VAMP-4|VAMP24	vesicle associated membrane protein 4	protein-coding
27108	chr10	27558521	27558850	+	0	NA	Intergenic	Intergenic	54381	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
90869	chr17	2375451	2375550	+	0	NA	exon (NM_001098509, exon 17 of 23)	exon (NM_001098509, exon 17 of 23)	25560	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
27460	chr10	32003001	32003400	+	0	NA	Intergenic	AluSx3|SINE|Alu	53225	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
204218	chr7	2526151	2526250	+	0	NA	promoter-TSS (NR_039791)	promoter-TSS (NR_039791)	-874	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
232927	chr9	136889771	136889930	+	0	NA	intron (NM_021138, intron 1 of 10)	intron (NM_021138, intron 1 of 10)	3117	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
102929	chr17	76585521	76587150	+	0	NA	promoter-TSS (NM_006456)	promoter-TSS (NM_006456)	-475	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
189409	chr5	172775301	172776030	+	0	NA	Intergenic	Intergenic	-4470	NM_004417	1843		NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
34995	chr11	522071	522430	+	0	NA	Intergenic	Intergenic	13317	NM_176795	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
187957	chr5	149347571	149347730	+	0	NA	TTS (NR_132366)	TTS (NR_132366)	2151	NM_152407	134266		NM_152407	ENSG00000164284	GRPEL2	Mt-GrpE#2	GrpE like 2, mitochondrial	protein-coding
68564	chr14	89407601	89408200	+	0	NA	intron (NM_001085471, intron 2 of 6)	L1MC5a|LINE|L1	9333	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
39507	chr11	61054951	61055250	+	0	NA	Intergenic	MIR|SINE|MIR	-38863	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
178870	chr4	154637771	154637930	+	0	NA	Intergenic	Intergenic	-25042	NM_000509	2266		NM_000509	ENSG00000171557	FGG	-	fibrinogen gamma chain	protein-coding
176556	chr4	98578071	98578230	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	80461	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
27495	chr10	32259151	32259450	+	0	NA	Intergenic	AluY|SINE|Alu	87858	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
88848	chr16	87602251	87602850	+	0	NA	promoter-TSS (NM_001271605)	promoter-TSS (NM_001271605)	42	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
15267	chr1	149646371	149647300	+	0	NA	non-coding (NR_111951, exon 2 of 3)	non-coding (NR_111951, exon 2 of 3)	39823	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
27801	chr10	35640471	35641250	+	0	NA	TTS (NR_039831)	TTS (NR_039831)	392	NR_039831	100616500		NR_039831	ENSG00000284265	MIR4683	-	microRNA 4683	ncRNA
146434	chr20	49635871	49636130	+	0	NA	3' UTR (NM_004776, exon 9 of 9)	3' UTR (NM_004776, exon 9 of 9)	-67863	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
119637	chr19	40803401	40804320	+	0	NA	intron (NM_053046, intron 2 of 5)	intron (NM_053046, intron 2 of 5)	4338	NM_053046	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
137122	chr2	191015371	191015550	+	0	NA	Intergenic	L2b|LINE|L2	-1210	NM_139266	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
178345	chr4	145918571	145918730	+	0	NA	intron (NM_178835, intron 1 of 14)	MIR3|SINE|MIR	20173	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
154438	chr22	35352401	35353300	+	0	NA	Intergenic	Intergenic	-16051	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
35304	chr11	1025071	1025780	+	0	NA	intron (NM_005961, intron 22 of 32)	intron (NM_005961, intron 22 of 32)	11293	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
127453	chr2	42194471	42194630	+	0	NA	intron (NM_019063, intron 1 of 22)	AluJb|SINE|Alu	-24319	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
28407	chr10	47740901	47741200	+	0	NA	Intergenic	L1ME2|LINE|L1	-2649	NR_134489	102724593		NR_134489		LOC102724593	-	uncharacterized LOC102724593	ncRNA
131486	chr2	96509421	96509900	+	0	NA	Intergenic	Intergenic	-1551	NR_104346	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
184810	chr5	111242571	111242930	+	0	NA	intron (NM_001744, intron 1 of 10)	L2|LINE|L2	18366	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
67372	chr14	69763971	69764530	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-2892	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
177077	chr4	108053971	108054500	+	0	NA	intron (NM_001130714, intron 9 of 9)	MIRb|SINE|MIR	49571	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
93243	chr17	17892071	17892230	+	0	NA	intron (NM_001033551, intron 3 of 13)	L2a|LINE|L2	-55139	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
220478	chr8	100461551	100462080	+	0	NA	Intergenic	Intergenic	79052	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
72504	chr15	33132801	33133000	+	0	NA	intron (NM_001277313, intron 4 of 20)	intron (NM_001277313, intron 4 of 20)	61814	NM_001277313	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
67901	chr14	74573621	74574950	+	0	NA	intron (NM_000428, intron 3 of 35)	intron (NM_000428, intron 3 of 35)	37952	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
225532	chr9	35756611	35758150	+	0	NA	3' UTR (NM_001080496, exon 9 of 9)	3' UTR (NM_001080496, exon 9 of 9)	-3104	NM_001044264	692094		NM_001044264	ENSG00000215183	MSMP	PSMP	microseminoprotein, prostate associated	protein-coding
207299	chr7	44016101	44016300	+	0	NA	intron (NR_003655, intron 2 of 15)	intron (NR_003655, intron 2 of 15)	2994	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
47818	chr12	6588351	6588450	+	0	NA	exon (NM_001363606, exon 23 of 40)	exon (NM_001363606, exon 23 of 40)	-6791	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
137297	chr2	195575951	195576400	+	0	NA	Intergenic	Intergenic	-80783	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
216491	chr8	20196621	20197750	+	0	NA	promoter-TSS (NM_001693)	promoter-TSS (NM_001693)	-196	NM_001693	526		NM_001693	ENSG00000147416	ATP6V1B2	ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2	ATPase H+ transporting V1 subunit B2	protein-coding
12026	chr1	97138371	97138600	+	0	NA	intron (NM_000110, intron 20 of 22)	intron (NM_000110, intron 20 of 22)	42562	NR_046590	100873932		NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	ncRNA
100925	chr17	64469251	64469550	+	0	NA	TTS (NM_001291316)	TTS (NM_001291316)	20285	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
219563	chr8	78666851	78666950	+	0	NA	intron (NM_001362969, intron 1 of 9)	intron (NM_001362969, intron 1 of 9)	811	NM_001362969	51101		NM_016010	ENSG00000104427	ZC2HC1A	C8orf70|CGI-62|FAM164A	zinc finger C2HC-type containing 1A	protein-coding
216760	chr8	22475051	22475150	+	0	NA	exon (NM_001243975, exon 2 of 13)	exon (NM_001243975, exon 2 of 13)	34022	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
16420	chr1	154545851	154545950	+	0	NA	intron (NM_001098475, intron 11 of 11)	AluSg|SINE|Alu	-7709	NR_046668	100874097		NR_046668	ENSG00000229780	UBE2Q1-AS1	-	UBE2Q1 antisense RNA 1	ncRNA
147815	chr20	62696371	62696980	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-12161	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
138416	chr2	205129551	205129850	+	0	NA	intron (NM_152526, intron 10 of 21)	intron (NM_152526, intron 10 of 21)	-552800	NM_201264	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
47111	chr12	672871	673620	+	0	NA	Intergenic	MIRb|SINE|MIR	-9800	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
102194	chr17	75169071	75169750	+	0	NA	intron (NM_001005849, intron 2 of 2)	AluY|SINE|Alu	13549	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
2772	chr1	10755721	10756280	+	0	NA	intron (NM_017766, intron 2 of 15)	intron (NM_017766, intron 2 of 15)	40646	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
152365	chr22	20494501	20497130	+	0	NA	promoter-TSS (NM_032775)	promoter-TSS (NM_032775)	-20	NR_033825	84861		NM_032775	ENSG00000099910	KLHL22	KELCHL	kelch like family member 22	protein-coding
9581	chr1	51990121	51991200	+	0	NA	promoter-TSS (NM_002867)	promoter-TSS (NM_002867)	40	NM_002867	5865		NM_002867	ENSG00000169213	RAB3B	-	RAB3B, member RAS oncogene family	protein-coding
202944	chr6	160930751	160931450	+	0	NA	Intergenic	CpG	-60627	NM_001363582	4216		NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
172179	chr4	1235421	1235880	+	0	NA	intron (NM_001377193, intron 3 of 9)	CpG	13078	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
144113	chr20	33915651	33916130	+	0	NA	Intergenic	Intergenic	-78021	NM_007367	22913		NM_007367	ENSG00000125970	RALY	HNRPCL2|P542	RALY heterogeneous nuclear ribonucleoprotein	protein-coding
22750	chr1	224374151	224374580	+	0	NA	intron (NM_001277200, intron 4 of 4)	MIR|SINE|MIR	17486	NM_014184	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
104388	chr17	81036501	81036800	+	0	NA	intron (NR_169577, intron 1 of 13)	intron (NR_169577, intron 1 of 13)	1499	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
50758	chr12	49021421	49022000	+	0	NA	3' UTR (NM_003482, exon 55 of 55)	3' UTR (NM_003482, exon 55 of 55)	-2934	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
180233	chr5	1576121	1576500	+	0	NA	intron (NR_003263, intron 4 of 6)	intron (NR_003263, intron 4 of 6)	18221	NR_003263	728609		NR_003263	ENSG00000291055	SDHAP3	SDHACL|SDHAL	SDHA pseudogene 3	pseudo
51056	chr12	49823251	49823550	+	0	NA	intron (NM_001368048, intron 1 of 13)	intron (NM_001368048, intron 1 of 13)	5013	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
73390	chr15	42577501	42577780	+	0	NA	intron (NM_020759, intron 1 of 32)	MamRTE1|LINE|RTE-BovB	2034	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
150063	chr21	37392151	37392250	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	24643	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
218642	chr8	56999301	56999890	+	0	NA	Intergenic	LTR40a|LTR|ERVL	-5728	NM_017813	54928		NM_017813	ENSG00000104331	BPNT2	GPAPP|IMP 3|IMP-3|IMPA3|IMPAD1	3'(2'), 5'-bisphosphate nucleotidase 2	protein-coding
149925	chr21	36234371	36234730	+	0	NA	intron (NM_001320714, intron 15 of 36)	AluSz|SINE|Alu	70009	NM_005128	9980		NM_005128	ENSG00000142197	DOP1B	21orf5|C21orf5|DOPEY2	DOP1 leucine zipper like protein B	protein-coding
136003	chr2	172395701	172395900	+	0	NA	Intergenic	Intergenic	-31536	NM_001316306	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
121876	chr19	48324871	48325700	+	0	NA	promoter-TSS (NM_001425)	promoter-TSS (NM_001425)	-267	NM_001425	2014		NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3 (MAM blood group)	protein-coding
148235	chr20	63630401	63630950	+	0	NA	Intergenic	Intergenic	3440	NR_132418	100505771		NR_132417	ENSG00000232442	MHENCR	-	melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489	ncRNA
224740	chr9	21795601	21796000	+	0	NA	Intergenic	Intergenic	-6836	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
132242	chr2	102419771	102420180	+	0	NA	intron (NM_003853, intron 2 of 11)	intron (NM_003853, intron 2 of 11)	1185	NM_003853	8807		NM_003853	ENSG00000115607	IL18RAP	ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB	interleukin 18 receptor accessory protein	protein-coding
48343	chr12	9319121	9319580	+	0	NA	Intergenic	Intergenic	35693	NR_024374	642846		NR_024374		LOC642846	-	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like	ncRNA
213579	chr7	139361851	139361950	+	0	NA	intron (NM_016019, intron 1 of 9)	intron (NM_016019, intron 1 of 9)	2006	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
52144	chr12	54221701	54222100	+	0	NA	Intergenic	Intergenic	9576	NR_039851	100616400		NR_039851	ENSG00000283803	MIR3198-2	mir-3198-2	microRNA 3198-2	ncRNA
230888	chr9	129208301	129209030	+	0	NA	Intergenic	L2c|LINE|L2	-30404	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
73365	chr15	42488971	42489330	+	0	NA	intron (NM_001381994, intron 1 of 20)	intron (NM_001381994, intron 1 of 20)	1991	NM_001381998	64397		NM_022473	ENSG00000103994	ZNF106	SH3BP3|ZFP106|ZNF474	zinc finger protein 106	protein-coding
216517	chr8	20380771	20380990	+	0	NA	Intergenic	Intergenic	-76917	NM_021020	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
23098	chr1	226669221	226669680	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	5618	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
237094	chrX	104075651	104076480	+	0	NA	intron (NM_001350212, intron 1 of 3).2	CpG	171	NM_194324	286527		NM_194324	ENSG00000158427	TMSB15B	TMSB15A|TMSL8|TMSNB|Tbeta15b	thymosin beta 15B	protein-coding
89295	chr16	88705801	88707530	+	0	NA	promoter-TSS (NM_001171815)	promoter-TSS (NM_001171815)	162	NM_001012762	348180		NM_001012759	ENSG00000174177	CTU2	C16orf84|MFRG|NCS2|UPF0432	cytosolic thiouridylase subunit 2	protein-coding
17885	chr1	160078421	160079080	+	0	NA	Intergenic	Intergenic	-2788	NM_004983	3765		NM_004983	ENSG00000162728	KCNJ9	GIRK3|KIR3.3	potassium inwardly rectifying channel subfamily J member 9	protein-coding
174018	chr4	26573451	26573550	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-10424	NM_001292054	55296		NM_018317	ENSG00000109680	TBC1D19	-	TBC1 domain family member 19	protein-coding
91227	chr17	3930571	3930930	+	0	NA	intron (NM_174953, intron 17 of 22)	intron (NM_174953, intron 17 of 22)	-14285	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
178958	chr4	159175401	159175980	+	0	NA	intron (NM_001351724, intron 1 of 30)	intron (NM_001351724, intron 1 of 30)	-46796	NR_037459	100500881		NR_037459	ENSG00000264105	MIR3688-1	MIR3688|mir-3688-1	microRNA 3688-1	ncRNA
10128	chr1	59333071	59333300	+	0	NA	intron (NM_001350793, intron 4 of 17)	MamRTE1|LINE|RTE-BovB	23153	NM_001350792	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
152650	chr22	21551851	21552400	+	0	NA	promoter-TSS (NM_001128633).2	promoter-TSS (NM_001128633).2	-664	NM_001128633	150221		NM_001128633	ENSG00000183246	RIMBP3C	RIM-BP3.3|RIMBP3.3	RIMS binding protein 3C	protein-coding
142901	chr20	17966921	17967700	+	0	NA	intron (NM_001282454, intron 1 of 12)	intron (NM_001282454, intron 1 of 12)	1484	NM_152227	27131		NM_014426	ENSG00000089006	SNX5	-	sorting nexin 5	protein-coding
92550	chr17	8955851	8955950	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	9807	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
63374	chr13	114051951	114052750	+	0	NA	intron (NM_001320822, intron 2 of 23).2	intron (NM_001320822, intron 2 of 23).2	25605	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
111453	chr19	3836901	3837250	+	0	NA	intron (NM_015174, intron 1 of 18)	intron (NM_015174, intron 1 of 18)	31963	NM_001145640	23217		NM_015174	ENSG00000105278	ZFR2	KIAA1086	zinc finger RNA binding protein 2	protein-coding
232402	chr9	136001151	136001250	+	0	NA	Intergenic	Intergenic	-39827	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
196681	chr6	44668051	44668380	+	0	NA	Intergenic	Intergenic	-116334	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
209157	chr7	75179951	75180050	+	0	NA	Intergenic	Intergenic	-8002	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
160291	chr3	27357701	27358350	+	0	NA	intron (NM_199347, intron 2 of 24)	intron (NM_199347, intron 2 of 24)	11358	NM_199347	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
139159	chr2	219172321	219172930	+	0	NA	exon (NM_015680, exon 8 of 8)	exon (NM_015680, exon 8 of 8)	-2596	NM_001144890	151295		NM_144712	ENSG00000213901	SLC23A3	E2BP3|SVCT3|Yspl1	solute carrier family 23 member 3	protein-coding
65943	chr14	55445901	55446400	+	0	NA	Intergenic	ORSL-2a|DNA|hAT-Tip100	-5605	NM_199047	387332		NM_199047	ENSG00000182521	TBPL2	TBP2|TRF3	TATA-box binding protein like 2	protein-coding
177393	chr4	112230971	112232600	+	0	NA	promoter-TSS (NM_001128426)	promoter-TSS (NM_001128426)	-2	NM_018569	55435		NM_018569	ENSG00000138660	AP1AR	2C18|C4orf16|GBAR|PRO0971|gamma-BAR	adaptor related protein complex 1 associated regulatory protein	protein-coding
64038	chr14	22528371	22528600	+	0	NA	Intergenic	Intergenic	28577	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
225736	chr9	37031851	37032200	+	0	NA	intron (NR_103999, intron 1 of 8)	intron (NR_103999, intron 1 of 8)	2243	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
89260	chr16	88658171	88658830	+	0	NA	intron (NM_002461, intron 2 of 9)	AluJo|SINE|Alu	4591	NM_002461	4597		NM_002461	ENSG00000167508	MVD	FP17780|MDDase|MPD|POROK7	mevalonate diphosphate decarboxylase	protein-coding
10821	chr1	77927451	77927550	+	0	NA	intron (NM_144573, intron 8 of 12)	intron (NM_144573, intron 8 of 12)	-37961	NR_103535	374987		NM_199343	ENSG00000235927	NEXN-AS1	C1orf118	NEXN antisense RNA 1	ncRNA
178608	chr4	152063821	152064180	+	0	NA	Intergenic	Intergenic	-36753	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
4045	chr1	18959271	18960030	+	0	NA	Intergenic	Intergenic	-2974	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
171405	chr3	196203251	196203350	+	0	NA	intron (NR_135617, intron 5 of 8)	intron (NR_135617, intron 5 of 8)	8100	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
189224	chr5	171855921	171856180	+	0	NA	Intergenic	MIRc|SINE|MIR	70233	NM_001289970	644994		NM_001289970	ENSG00000185662	SMIM23	C5orf50	small integral membrane protein 23	protein-coding
84698	chr16	30798001	30798200	+	0	NA	Intergenic	Intergenic	-10895	NM_001345970	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
123847	chr19	55239151	55239730	+	0	NA	TTS (NR_106860)	TTS (NR_106860)	536	NR_106860	102465481		NR_106860	ENSG00000278328	MIR6802	hsa-mir-6802	microRNA 6802	ncRNA
188934	chr5	160466401	160466830	+	0	NA	Intergenic	Intergenic	-1636	NR_132748	107075116		NR_132748	ENSG00000253522	MIR3142HG	-	MIR3142 host gene	ncRNA
175683	chr4	77028301	77028730	+	0	NA	intron (NM_018243, intron 7 of 9)	intron (NM_018243, intron 7 of 9)	46395	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
152900	chr22	22737401	22738080	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-85036	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
142651	chr20	5806471	5806830	+	0	NA	intron (NM_001303478, intron 3 of 3)	intron (NM_001303478, intron 3 of 3)	56249	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
45528	chr11	118744601	118745000	+	0	NA	Intergenic	Intergenic	46148	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
105802	chr18	2917201	2917600	+	0	NA	3' UTR (NM_014646, exon 20 of 20)	3' UTR (NM_014646, exon 20 of 20)	29223	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
115985	chr19	17079621	17080930	+	0	NA	intron (NM_004145, intron 1 of 39)	MLT1B|LTR|ERVL-MaLR	4498	NM_004145	4650		NM_004145	ENSG00000099331	MYO9B	CELIAC4|MYR5	myosin IXB	protein-coding
38114	chr11	35230851	35231150	+	0	NA	3' UTR (NM_000610, exon 18 of 18)	3' UTR (NM_000610, exon 18 of 18)	68050	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
112428	chr19	6276671	6277230	+	0	NA	intron (NM_005934, intron 1 of 11)	intron (NM_005934, intron 1 of 11)	3025	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
90177	chr17	332401	332800	+	0	NA	intron (NR_164142, intron 2 of 2)	intron (NR_164142, intron 2 of 2)	1081	NR_164141	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
11278	chr1	89125251	89125350	+	0	NA	intron (NM_004120, intron 1 of 10)	intron (NM_004120, intron 1 of 10)	814	NM_004120	2634		NM_004120	ENSG00000162645	GBP2	-	guanylate binding protein 2	protein-coding
165313	chr3	87271371	87271530	+	0	NA	intron (NM_001122757, intron 2 of 5)	intron (NM_001122757, intron 2 of 5)	5134	NM_001122757	5449		NM_000306	ENSG00000064835	POU1F1	CPHD1|GHF-1|PIT1|POU1F1a|Pit-1	POU class 1 homeobox 1	protein-coding
222799	chr8	142405201	142405400	+	0	NA	Intergenic	Intergenic	-2118	NM_145003	203062		NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
26444	chr10	17423701	17424250	+	0	NA	intron (NR_144322, intron 2 of 6)	intron (NR_144322, intron 2 of 6)	30620	NM_001345961	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
231225	chr9	129966101	129966600	+	0	NA	intron (NM_001363755, intron 4 of 15)	L2a|LINE|L2	76839	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
44500	chr11	106025021	106025580	+	0	NA	Intergenic	AluJr|SINE|Alu	-3013	NM_001318749	84437		NM_032424	ENSG00000170903	MSANTD4	KIAA1826	Myb/SANT DNA binding domain containing 4 with coiled-coils	protein-coding
21150	chr1	203684401	203684600	+	0	NA	intron (NM_001365783, intron 2 of 20)	AluSx3|SINE|Alu	-45081	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
180421	chr5	10421721	10422430	+	0	NA	intron (NM_001270660, intron 21 of 24)	L1MEj|LINE|L1	19711	NR_162106	113218502		NR_162106		MIR10397	-	microRNA 10397	ncRNA
60938	chr13	46321421	46322230	+	0	NA	Intergenic	Intergenic	-23981	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
10783	chr1	77438371	77438730	+	0	NA	intron (NM_174858, intron 8 of 13)	MER65-int|LTR|ERV1	155463	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
169494	chr3	169771721	169772500	+	0	NA	Intergenic	Intergenic	-1286	NM_001185118	55892		NM_018657	ENSG00000085274	MYNN	OSZF|SBBIZ1|ZBTB31|ZNF902	myoneurin	protein-coding
107938	chr18	57959371	57959530	+	0	NA	Intergenic	Intergenic	-84776	NM_001144967	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
51744	chr12	53251521	53253480	+	0	NA	intron (NM_032889, intron 1 of 1)	intron (NM_032889, intron 1 of 1)	405	NM_032889	84975		NM_032889	ENSG00000182544	MFSD5	SLC61A1|hsMOT2	major facilitator superfamily domain containing 5	protein-coding
161308	chr3	39398501	39399100	+	0	NA	Intergenic	Intergenic	-7920	NM_002295	3921		NM_002295	ENSG00000168028	RPSA	37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40|uS2	ribosomal protein SA	protein-coding
49967	chr12	41932271	41932930	+	0	NA	Intergenic	Intergenic	168411	NR_135041	101927038		NR_135040	ENSG00000257784	LINC02400	-	long intergenic non-protein coding RNA 2400	ncRNA
33835	chr10	124093251	124093500	+	0	NA	promoter-TSS (NM_015892)	promoter-TSS (NM_015892)	223	NM_001270765	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
32355	chr10	102381721	102382480	+	0	NA	exon (NM_001377140, exon 38 of 38)	exon (NM_001377140, exon 38 of 38)	-12010	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
172222	chr4	1318521	1319000	+	0	NA	intron (NR_123716, intron 3 of 6)	intron (NR_123716, intron 3 of 6)	8969	NM_001297433	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
9752	chr1	53321321	53321750	+	0	NA	intron (NM_017522, intron 2 of 15)	intron (NM_017522, intron 2 of 15)	6535	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
193771	chr6	31360251	31360750	+	0	NA	Intergenic	L1PA8A|LINE|L1	-3321	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
60289	chr13	40629251	40629350	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSp|SINE|Alu	37341	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
185541	chr5	131352821	131353080	+	0	NA	intron (NM_001375633, intron 2 of 5)	intron (NM_001375633, intron 2 of 5)	88897	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
175784	chr4	77796601	77796800	+	0	NA	intron (NM_001365006, intron 1 of 11)	L1M5|LINE|L1	22364	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
75555	chr15	66923401	66923700	+	0	NA	Intergenic	Intergenic	32965	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
63	chr1	275901	276100	+	0	NA	Intergenic	Intergenic	-69403	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
117876	chr19	32642721	32643600	+	0	NA	exon (NM_032139, exon 9 of 29)	exon (NM_032139, exon 9 of 29)	32020	NM_032139	84079		NM_032139	ENSG00000105186	ANKRD27	PP12899|VARP	ankyrin repeat domain 27	protein-coding
220795	chr8	102653451	102655100	+	0	NA	promoter-TSS (NM_001032282)	promoter-TSS (NM_001032282)	-311	NR_103760	7071		NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	KLF transcription factor 10	protein-coding
172197	chr4	1255271	1255830	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-5195	NM_001377192	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
47952	chr12	6851701	6853800	+	0	NA	intron (NM_001382588, intron 1 of 18)	intron (NM_001382588, intron 1 of 18)	600	NR_168456	8078		NM_003481	ENSG00000111667	USP5	ISOT	ubiquitin specific peptidase 5	protein-coding
101045	chr17	64804071	64804430	+	0	NA	intron (NR_024386, intron 5 of 10)	AluSx1|SINE|Alu	17852	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
165019	chr3	71394501	71394700	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-89829	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
20131	chr1	192549851	192550200	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-25748	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
32406	chr10	102441371	102441530	+	0	NA	Intergenic	AluY|SINE|Alu	4938	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B|mir-146b	microRNA 146b	ncRNA
225113	chr9	33457671	33457830	+	0	NA	Intergenic	Intergenic	-10157	NM_001318144	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
78575	chr15	93028101	93028980	+	0	NA	TTS (NM_001271)	TTS (NM_001271)	44616	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
155741	chr22	39152181	39153880	+	0	NA	promoter-TSS (NM_175709)	promoter-TSS (NM_175709)	-350	NM_175709	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
161971	chr3	46293121	46294630	+	0	NA	Intergenic	Intergenic	51415	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
71096	chr14	104877621	104878150	+	0	NA	exon (NM_001112726, exon 4 of 19)	exon (NM_001112726, exon 4 of 19)	12571	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
145740	chr20	45085171	45085530	+	0	NA	Intergenic	Intergenic	15777	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
99616	chr17	50554471	50555180	+	0	NA	intron (NM_022827, intron 15 of 16)	intron (NM_022827, intron 15 of 16)	-5890	NM_198377	8913		NM_018896	ENSG00000006283	CACNA1G	Ca(V)T.1|Cav3.1|NBR13|SCA42|SCA42ND	calcium voltage-gated channel subunit alpha1 G	protein-coding
70798	chr14	103537251	103537850	+	0	NA	TTS (NM_152307)	TTS (NM_152307)	8354	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
104626	chr17	81432921	81434080	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	17688	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
2321	chr1	9125171	9125730	+	0	NA	intron (NM_024980, intron 1 of 3)	intron (NM_024980, intron 1 of 3)	3652	NM_024980	80045		NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
204120	chr7	2268451	2268550	+	0	NA	intron (NM_013321, intron 5 of 10)	SVA_F|Retroposon|SVA	-10923	NR_106895	102465503		NR_106895	ENSG00000284047	MIR6836	hsa-mir-6836	microRNA 6836	ncRNA
53350	chr12	64647571	64648130	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-25245	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52830	chr12	57060901	57061700	+	0	NA	intron (NM_015257, intron 6 of 7)	intron (NM_015257, intron 6 of 7)	-10102	NM_001256041	4640		NM_005379	ENSG00000166866	MYO1A	BBMI|DFNA48|MIHC|MYHL	myosin IA	protein-coding
36000	chr11	2891371	2891530	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-5675	NM_001362474	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
221108	chr8	118087071	118087430	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	24576	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
107074	chr18	34859371	34859530	+	0	NA	intron (NM_001198939, intron 14 of 21)	MER51A|LTR|ERV1	41069	NM_032981	1837		NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding
20838	chr1	201559551	201560050	+	0	NA	Intergenic	Intergenic	39896	NR_026667	376693		NR_026667		RPS10P7	RPS10_2_147|lnc-MCEI	ribosomal protein S10 pseudogene 7	pseudo
213597	chr7	139387101	139387300	+	0	NA	intron (NM_016019, intron 2 of 9)	intron (NM_016019, intron 2 of 9)	27306	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
31604	chr10	97365021	97365630	+	0	NA	intron (NM_015179, intron 29 of 33)	AluY|SINE|Alu	-30596	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
177099	chr4	108076801	108077000	+	0	NA	intron (NM_016269, intron 8 of 11)	AluSx1|SINE|Alu	72236	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
106423	chr18	13542171	13542330	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-68864	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
144532	chr20	35712951	35713350	+	0	NA	intron (NM_184234, intron 11 of 16)	intron (NM_184234, intron 11 of 16)	13745	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
207277	chr7	43982671	43983200	+	0	NA	intron (NR_003655, intron 7 of 15)	intron (NR_003655, intron 7 of 15)	-14933	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
58482	chr12	132151221	132151630	+	0	NA	intron (NM_024078, intron 11 of 14)	intron (NM_024078, intron 11 of 14)	6968	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
110727	chr19	2318551	2318650	+	0	NA	Intergenic	Intergenic	9986	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
137279	chr2	195495501	195495700	+	0	NA	Intergenic	Intergenic	-161358	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
121439	chr19	47032021	47032880	+	0	NA	intron (NM_002517, intron 4 of 11)	intron (NM_002517, intron 4 of 11)	-2867	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
142378	chr20	3804351	3804450	+	0	NA	intron (NM_004358, intron 14 of 15)	L2|LINE|L2	-4094	NR_109859	101929125		NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
213411	chr7	137934401	137934600	+	0	NA	intron (NM_001253775, intron 1 of 3)	MIRb|SINE|MIR	-1512	NM_001318246	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
87126	chr16	68845571	68846030	+	0	NA	intron (NM_024562, intron 1 of 17)	AluJb|SINE|Alu	2269	NM_024562	79613		NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog	protein-coding
1070	chr1	1915571	1916500	+	0	NA	intron (NM_138705, intron 2 of 5)	intron (NM_138705, intron 2 of 5)	775	NM_138705	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
138325	chr2	203779451	203780280	+	0	NA	Intergenic	LTR12F|LTR|ERV1	73226	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123525	chr19	54242701	54242950	+	0	NA	promoter-TSS (NM_024318).4	promoter-TSS (NM_024318).4	-30	NM_001360167	79168		NM_024318	ENSG00000244482	LILRA6	CD85b|ILT-8|ILT5|ILT8|LILRB3|LILRB6	leukocyte immunoglobulin like receptor A6	protein-coding
177142	chr4	108120821	108121580	+	0	NA	intron (NM_016269, intron 3 of 11)	Charlie1a|DNA|hAT-Charlie	45597	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
135162	chr2	157597121	157597600	+	0	NA	5' UTR (NM_001111031, exon 1 of 9)	5' UTR (NM_001111031, exon 1 of 9)	200	NM_001111031	130399		NM_145259	ENSG00000123612	ACVR1C	ACVRLK7|ALK7	activin A receptor type 1C	protein-coding
8664	chr1	41890251	41890350	+	0	NA	intron (NR_038260, intron 1 of 2)	L2c|LINE|L2	28622	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
29612	chr10	71759551	71759950	+	0	NA	intron (NM_022153, intron 3 of 6)	AluSz|SINE|Alu	13770	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
176752	chr4	101724171	101724400	+	0	NA	Intergenic	Intergenic	-66322	NM_001127507	55024		NM_017935	ENSG00000153064	BANK1	BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding
188078	chr5	150153651	150153750	+	0	NA	non-coding (NR_149150, exon 2 of 2)	non-coding (NR_149150, exon 2 of 2)	2145	NM_002609	5159		NM_002609	ENSG00000113721	PDGFRB	CD140B|IBGC4|IMF1|JTK12|KOGS|PDGFR|PDGFR-1|PDGFR1|PENTT	platelet derived growth factor receptor beta	protein-coding
96809	chr17	41922571	41923450	+	0	NA	Intergenic	Intergenic	-3988	NM_001303274	47		NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
232174	chr9	134174121	134174650	+	0	NA	Intergenic	Intergenic	-9821	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
25843	chr10	11225001	11225200	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	60070	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
37689	chr11	27817321	27817400	+	0	NA	Intergenic	L2a|LINE|L2	-95330	NM_170731	627		NM_001709	ENSG00000176697	BDNF	ANON2|BULN2	brain derived neurotrophic factor	protein-coding
117849	chr19	31553151	31553250	+	0	NA	Intergenic	Intergenic	-34989	NM_001278577	100507527		NM_001205273	ENSG00000267465	LINC03103	THEG5	long intergenic non-protein coding RNA 3103	ncRNA
47617	chr12	6070451	6070550	+	0	NA	intron (NM_000552, intron 10 of 51)	MIRb|SINE|MIR	-30317	NR_145989	109729112		NR_145989		SNORA120	-	small nucleolar RNA, H/ACA box 120	snoRNA
74764	chr15	63237971	63238480	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	-39325	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
61240	chr13	49847801	49848350	+	0	NA	Intergenic	CpG	-42334	NR_003268	220429		NR_003268	ENSG00000181358	CTAGE10P	-	CTAGE family member 10, pseudogene	pseudo
213742	chr7	140405721	140405980	+	0	NA	intron (NM_001008749, intron 1 of 3)	MER5A|DNA|hAT-Charlie	1792	NM_001008749	401409		NM_001008749	ENSG00000146955	RAB19	RAB19B	RAB19, member RAS oncogene family	protein-coding
79701	chr16	1300471	1301730	+	0	NA	Intergenic	Intergenic	-8052	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
29435	chr10	70354951	70356080	+	0	NA	intron (NM_001278214, intron 1 of 3)	intron (NM_001278214, intron 1 of 3)	21264	NM_001278213	55222		NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
73875	chr15	50352471	50352700	+	0	NA	non-coding (NR_026891, exon 1 of 1)	non-coding (NR_026891, exon 1 of 1)	-1589	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
54477	chr12	92033071	92033430	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	108463	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
198945	chr6	110682351	110682950	+	0	NA	intron (NM_015076, intron 2 of 12)	intron (NM_015076, intron 2 of 12)	-131971	NM_001287215	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
144655	chr20	36068121	36068580	+	0	NA	Intergenic	AluSx|SINE|Alu	-17390	NR_027451	647979		NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
187900	chr5	148834051	148834150	+	0	NA	Intergenic	Intergenic	7489	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
132126	chr2	101695571	101695930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1953	NM_145686	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
204773	chr7	5608251	5608850	+	0	NA	Intergenic	Intergenic	15734	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
66132	chr14	60163971	60164900	+	0	NA	intron (NM_001322280, intron 1 of 6)	MIRb|SINE|MIR	963	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
2046	chr1	7785371	7785530	+	0	NA	exon (NM_001289861, exon 3 of 23)	exon (NM_001289861, exon 3 of 23)	1021	NM_001289862	8863		NM_016831	ENSG00000049246	PER3	FASPS3|GIG13	period circadian regulator 3	protein-coding
232620	chr9	136443951	136444200	+	0	NA	intron (NM_001276418, intron 27 of 28)	intron (NM_001276418, intron 27 of 28)	-4230	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
167218	chr3	128448401	128448900	+	0	NA	Intergenic	L2c|LINE|L2	-14944	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
119930	chr19	41794651	41795310	+	0	NA	Intergenic	L1MC4a|LINE|L1	-1607	NM_001815	1084		NM_001815	ENSG00000170956	CEACAM3	CD66D|CEA|CGM1|CGM1a|W264|W282	CEA cell adhesion molecule 3	protein-coding
5210	chr1	24976721	24976980	+	0	NA	Intergenic	HAL1|LINE|L1	-11840	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
83306	chr16	24538871	24540390	+	0	NA	promoter-TSS (NM_006910)	promoter-TSS (NM_006910)	43	NM_032626	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
18949	chr1	168531571	168532450	+	0	NA	Intergenic	Intergenic	11987	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
187650	chr5	143054371	143054930	+	0	NA	intron (NR_146198, intron 15 of 22)	intron (NR_146198, intron 15 of 22)	-137850	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
146844	chr20	51424271	51425100	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	28292	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
144905	chr20	36946271	36946430	+	0	NA	intron (NM_001363733, intron 2 of 15)	AluY|SINE|Alu	5358	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
203486	chr7	582501	582700	+	0	NA	intron (NM_001164759, intron 8 of 10)	intron (NM_001164759, intron 8 of 10)	-20245	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
118220	chr19	35170721	35170980	+	0	NA	TTS (NM_001320912)	TTS (NM_001320912)	16115	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
87058	chr16	68345521	68345980	+	0	NA	non-coding (NR_147057, exon 10 of 20)	non-coding (NR_147057, exon 10 of 20)	34636	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
3534	chr1	16078771	16080050	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-5759	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
211577	chr7	105690651	105691400	+	0	NA	intron (NM_001385596, intron 3 of 11)	intron (NM_001385596, intron 3 of 11)	-11863	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
126531	chr2	28547451	28548680	+	0	NA	intron (NM_153021, intron 14 of 57)	intron (NM_153021, intron 14 of 57)	-18292	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
115492	chr19	15377671	15378700	+	0	NA	intron (NM_005858, intron 1 of 13)	intron (NM_005858, intron 1 of 13)	1602	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
155412	chr22	38395801	38396550	+	0	NA	intron (NR_002821, intron 1 of 4)	intron (NR_002821, intron 1 of 4)	2740	NM_001289912	102800317		NM_001289912	ENSG00000283900	TPTEP2-CSNK1E	LOC400927-CSNK1E	TPTEP2-CSNK1E readthrough	protein-coding
206350	chr7	30413001	30413330	+	0	NA	Intergenic	Intergenic	22280	NR_108081	100506516		NR_108081	ENSG00000281404	LINC01176	-	long intergenic non-protein coding RNA 1176	ncRNA
224518	chr9	19123501	19124330	+	0	NA	intron (NR_038064, intron 2 of 6)	AluSc|SINE|Alu	3577	NM_001122	123		NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
41408	chr11	66042501	66042700	+	0	NA	exon (NM_033036, exon 3 of 3)	exon (NM_033036, exon 3 of 3)	6561	NM_033036	89792		NM_033036	ENSG00000175229	GAL3ST3	GAL3ST-3|GAL3ST2	galactose-3-O-sulfotransferase 3	protein-coding
163991	chr3	53154951	53155250	+	0	NA	Intergenic	Intergenic	-6109	NM_006254	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
7254	chr1	32355201	32355600	+	0	NA	Intergenic	Intergenic	6843	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
126816	chr2	30481471	30481630	+	0	NA	intron (NM_001304445, intron 3 of 7)	L2-3_Crp|LINE|L2	34304	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
41160	chr11	65605821	65606500	+	0	NA	intron (NM_002419, intron 6 of 9)	intron (NM_002419, intron 6 of 9)	8061	NM_002419	4296		NM_002419	ENSG00000173327	MAP3K11	MEKK11|MLK-3|MLK3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding
165160	chr3	72291501	72291700	+	0	NA	Intergenic	Intergenic	140343	NR_038221	201617		NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
29957	chr10	73497201	73497930	+	0	NA	TTS (NR_135249)	TTS (NR_135249)	-1541	NM_001289969	5532		NM_021132	ENSG00000107758	PPP3CB	CALNA2|CALNB|CNA2|PP2Bbeta	protein phosphatase 3 catalytic subunit beta	protein-coding
175298	chr4	67762151	67762350	+	0	NA	Intergenic	Intergenic	-7862	NM_000406	2798		NM_000406	ENSG00000109163	GNRHR	GNRHR1|GRHR|HH7|LHRHR|LRHR	gonadotropin releasing hormone receptor	protein-coding
67862	chr14	74241651	74241750	+	0	NA	intron (NM_182894, intron 2 of 4)	intron (NM_182894, intron 2 of 4)	2251	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
13639	chr1	116485101	116485530	+	0	NA	Intergenic	Intergenic	-6489	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
185325	chr5	126793201	126793400	+	0	NA	intron (NR_134488, intron 1 of 11)	intron (NR_134488, intron 1 of 11)	16164	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
188162	chr5	150444471	150444830	+	0	NA	intron (NM_005617, intron 4 of 4)	intron (NM_005617, intron 4 of 4)	5089	NM_005617	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
207026	chr7	38433651	38434150	+	0	NA	intron (NM_139316, intron 12 of 19)	intron (NM_139316, intron 12 of 19)	92323	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
135078	chr2	156580521	156580780	+	0	NA	intron (NM_000408, intron 16 of 16)	intron (NM_000408, intron 16 of 16)	144271	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
16893	chr1	155862651	155862980	+	0	NA	intron (NM_152280, intron 1 of 3)	intron (NM_152280, intron 1 of 3)	3248	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
179181	chr4	173169301	173170380	+	0	NA	promoter-TSS (NR_134242)	promoter-TSS (NR_134242)	-188	NR_134241	101930370		NR_134241	ENSG00000245213	GALNT7-DT	-	GALNT7 divergent transcript	ncRNA
127188	chr2	38526721	38527180	+	0	NA	Intergenic	AluSx4|SINE|Alu	-11210	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
168838	chr3	152258431	152259000	+	0	NA	intron (NM_001376839, intron 2 of 10)	intron (NM_001376839, intron 2 of 10)	-10214	NM_001376823	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
151255	chr21	45320421	45321250	+	0	NA	Intergenic	Intergenic	21155	NR_103811	388830		NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
235910	chrX	53077501	53078250	+	0	NA	3' UTR (NM_018969, exon 2 of 2)	3' UTR (NM_018969, exon 2 of 2)	-4492	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
16922	chr1	155896421	155896680	+	0	NA	Intergenic	AluJr4|SINE|Alu	14368	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
3706	chr1	16584571	16584930	+	0	NA	intron (NM_017940, intron 12 of 28)	AluSg|SINE|Alu	28814	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
204674	chr7	5492271	5492830	+	0	NA	intron (NM_024963, intron 3 of 4)	MLT1C|LTR|ERVL-MaLR	3367	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
41195	chr11	65643921	65644650	+	0	NA	intron (NM_153253, intron 4 of 15)	intron (NM_153253, intron 4 of 15)	4164	NM_153253	6494		NM_006747	ENSG00000213445	SIPA1	SPA1	signal-induced proliferation-associated 1	protein-coding
89486	chr16	89119971	89121080	+	0	NA	intron (NR_147928, intron 7 of 11)	intron (NR_147928, intron 7 of 11)	-16023	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
69857	chr14	99264621	99264980	+	0	NA	intron (NM_022898, intron 1 of 2)	intron (NM_022898, intron 1 of 2)	7397	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
27962	chr10	42208971	42209230	+	0	NA	Intergenic	Intergenic	158945	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
225360	chr9	34669401	34669600	+	0	NA	Intergenic	Intergenic	-3444	NM_001320037	730098		NM_001320037	ENSG00000187186	LOC730098	-	uncharacterized LOC730098	protein-coding
211320	chr7	104160471	104160650	+	0	NA	intron (NM_002553, intron 12 of 13)	intron (NM_002553, intron 12 of 13)	47453	NM_002553	5001		NM_002553	ENSG00000164815	ORC5	ORC5L|ORC5P|ORC5T|PPP1R117	origin recognition complex subunit 5	protein-coding
80664	chr16	3015451	3016230	+	0	NA	exon (NM_021195, exon 2 of 2)	exon (NM_021195, exon 2 of 2)	2343	NM_021195	9074		NM_021195	ENSG00000184697	CLDN6	-	claudin 6	protein-coding
11758	chr1	92317251	92317350	+	0	NA	intron (NM_024813, intron 6 of 12)	AluSx3|SINE|Alu	18241	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
10056	chr1	58702021	58702700	+	0	NA	Intergenic	Intergenic	-2298	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
205232	chr7	7989401	7990300	+	0	NA	intron (NM_138426, intron 1 of 7)	intron (NM_138426, intron 1 of 7)	21054	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
227599	chr9	92687151	92687250	+	0	NA	Intergenic	L1ME3B|LINE|L1	-17069	NM_022755	64768		NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
34462	chr10	132446251	132447100	+	0	NA	intron (NR_149317, intron 2 of 2)	intron (NR_149317, intron 2 of 2)	1486	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
76181	chr15	73238001	73238200	+	0	NA	intron (NM_001172623, intron 8 of 27)	intron (NM_001172623, intron 8 of 27)	-61810	NR_162148	113219462		NR_162148		MIR12135	-	microRNA 12135	ncRNA
191791	chr6	14140251	14140550	+	0	NA	Intergenic	AluY|SINE|Alu	22628	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
159144	chr3	12660451	12661100	+	0	NA	intron (NM_001354691, intron 1 of 16)	AluSg4|SINE|Alu	2733	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
98330	chr17	46265751	46265850	+	0	NA	Intergenic	Intergenic	-29331	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
56711	chr12	120097771	120098450	+	0	NA	intron (NM_001167606, intron 4 of 4)	AluY|SINE|Alu	18643	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
40692	chr11	64774351	64774650	+	0	NA	intron (NM_201995, intron 2 of 13)	intron (NM_201995, intron 2 of 13)	3261	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
191460	chr6	10801201	10801500	+	0	NA	intron (NM_001242957, intron 8 of 14)	intron (NM_001242957, intron 8 of 14)	37189	NM_001242957	4117		NM_005906	ENSG00000111837	MAK	RP62	male germ cell associated kinase	protein-coding
135934	chr2	171921721	171923230	+	0	NA	promoter-TSS (NM_003642)	promoter-TSS (NM_003642)	14	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
217824	chr8	37276501	37276850	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	217238	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
137246	chr2	191699301	191700180	+	0	NA	intron (NR_131917, intron 2 of 2)	intron (NR_131917, intron 2 of 2)	9559	NR_131917	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
175266	chr4	67509221	67509480	+	0	NA	intron (NR_155754, intron 9 of 18)	intron (NR_155754, intron 9 of 18)	36153	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
52183	chr12	54326421	54326850	+	0	NA	intron (NM_001271734, intron 1 of 7)	intron (NM_001271734, intron 1 of 7)	1504	NM_016057	22818		NM_016057	ENSG00000111481	COPZ1	CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP	COPI coat complex subunit zeta 1	protein-coding
90379	chr17	1265701	1266100	+	0	NA	Intergenic	AluY|SINE|Alu	-4544	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
83937	chr16	29107371	29107530	+	0	NA	intron (NR_003369, intron 15 of 16)	intron (NR_003369, intron 15 of 16)	32608	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
76888	chr15	77986101	77986300	+	0	NA	Intergenic	Intergenic	8025	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
184429	chr5	98975301	98975530	+	0	NA	intron (NR_151718, intron 1 of 3)	MSTB|LTR|ERVL-MaLR	46281	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
21411	chr1	205296101	205296680	+	0	NA	Intergenic	L2a|LINE|L2	25355	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
48384	chr12	9597471	9597630	+	0	NA	intron (NM_002258, intron 5 of 5)	Charlie9|DNA|hAT-Charlie	10366	NM_002258	3820		NM_002258	ENSG00000111796	KLRB1	CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A	killer cell lectin like receptor B1	protein-coding
72713	chr15	38660721	38661150	+	0	NA	Intergenic	Intergenic	-35663	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
25419	chr10	6563851	6564030	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	16336	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
15494	chr1	150415821	150416480	+	0	NA	intron (NM_015203, intron 1 of 10)	L2a|LINE|L2	52039	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
154848	chr22	37100671	37101030	+	0	NA	intron (NM_153609, intron 2 of 17)	L2a|LINE|L2	2806	NM_153609	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
83455	chr16	27332121	27332380	+	0	NA	intron (NM_000418, intron 2 of 10)	THE1C|LTR|ERVL-MaLR	18276	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
229611	chr9	123927801	123928280	+	0	NA	intron (NR_148208, intron 1 of 20)	intron (NR_148208, intron 1 of 20)	2086	NM_001352968	57706		NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
20720	chr1	200872421	200873150	+	0	NA	promoter-TSS (NM_005298)	promoter-TSS (NM_005298)	-196	NM_005298	2848		NM_005298	ENSG00000170128	GPR25	-	G protein-coupled receptor 25	protein-coding
57519	chr12	122125421	122125880	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	-42069	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
7982	chr1	37924171	37924330	+	0	NA	intron (NR_158630, intron 7 of 24)	AluSz6|SINE|Alu	7489	NM_001297434	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
168467	chr3	143086351	143086650	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-33271	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
97966	chr17	45243771	45244030	+	0	NA	exon (NM_005892, exon 18 of 27)	exon (NM_005892, exon 18 of 27)	-4025	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
14956	chr1	147890201	147890500	+	0	NA	Intergenic	Intergenic	-12445	NM_005267	2703		NM_005267	ENSG00000121634	GJA8	CAE|CAE1|CTRCT1|CX50|CZP1|MP70	gap junction protein alpha 8	protein-coding
93284	chr17	18109051	18109350	+	0	NA	intron (NM_016239, intron 1 of 64)	intron (NM_016239, intron 1 of 64)	444	NM_016239	51168		NM_016239	ENSG00000091536	MYO15A	DFNB3|MYO15	myosin XVA	protein-coding
169006	chr3	152435301	152435900	+	0	NA	intron (NM_207296, intron 4 of 8)	L1PREC2|LINE|L1	-94610	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
52728	chr12	56607971	56608330	+	0	NA	intron (NM_001351156, intron 12 of 30)	AluY|SINE|Alu	22176	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
38535	chr11	45902401	45903150	+	0	NA	exon (NM_005456, exon 5 of 12)	exon (NM_005456, exon 5 of 12)	4496	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
88647	chr16	85643251	85643700	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	30153	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
219914	chr8	86163001	86163200	+	0	NA	Intergenic	Intergenic	64190	NM_152565	245972		NM_152565	ENSG00000147614	ATP6V0D2	ATP6D2|VMA6	ATPase H+ transporting V0 subunit d2	protein-coding
176880	chr4	102757001	102757200	+	0	NA	intron (NM_005908, intron 1 of 16)	AluSp|SINE|Alu	3868	NM_005908	4126		NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
71326	chr14	105411071	105412580	+	0	NA	exon (NM_001195082, exon 4 of 4)	exon (NM_001195082, exon 4 of 4)	7914	NR_125384	100507437		NR_125384	ENSG00000251602	MTA1-DT	-	MTA1 divergent transcript	ncRNA
220822	chr8	102822071	102822430	+	0	NA	Intergenic	Intergenic	15428	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
82249	chr16	15075551	15076050	+	0	NA	intron (NM_018427, intron 10 of 17)	LTR16A1|LTR|ERVL	18472	NM_018427	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
164299	chr3	57647471	57647730	+	0	NA	intron (NM_152678, intron 9 of 19)	intron (NM_152678, intron 9 of 19)	45477	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
35122	chr11	691951	692280	+	0	NA	intron (NM_001367390, intron 1 of 11)	intron (NM_001367390, intron 1 of 11)	3107	NM_021008	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
123341	chr19	53852801	53853550	+	0	NA	Intergenic	Intergenic	-12453	NM_001290193	91663		NM_138373	ENSG00000179820	MYADM	SB135	myeloid associated differentiation marker	protein-coding
138541	chr2	207530701	207531590	+	0	NA	intron (NR_163946, intron 1 of 8)	MamRTE1|LINE|RTE-BovB	1183	NM_134442	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
43230	chr11	75446451	75446550	+	0	NA	intron (NM_030792, intron 9 of 16)	intron (NM_030792, intron 9 of 16)	5827	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
19790	chr1	182426521	182427380	+	0	NA	Intergenic	AluSx3|SINE|Alu	19329	NR_034131	388719		NM_001010899	ENSG00000203729	LINC00272	C1orf120|NCRNA00272	long intergenic non-protein coding RNA 272	ncRNA
96839	chr17	41974371	41974730	+	0	NA	3' UTR (NM_001330216, exon 4 of 4)	3' UTR (NM_001330216, exon 4 of 4)	6753	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
188378	chr5	152038851	152039250	+	0	NA	intron (NR_109876, intron 1 of 2)	L1PA7|LINE|L1	80152	NR_109876	101927115		NR_109876	ENSG00000254226	LINC01933	CTB-12O2.1	long intergenic non-protein coding RNA 1933	ncRNA
169581	chr3	170811921	170812310	+	0	NA	Intergenic	Intergenic	58080	NR_135259	200916		NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22 like 1	protein-coding
197808	chr6	87703571	87703800	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1452	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
181937	chr5	54985051	54985600	+	0	NA	exon (NM_001135604, exon 1 of 2)	exon (NM_001135604, exon 1 of 2)	268	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
175689	chr4	77056501	77056750	+	0	NA	intron (NM_001348136, intron 2 of 5)	AluY|SINE|Alu	18285	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
210647	chr7	100473871	100474030	+	0	NA	intron (NM_001303043, intron 3 of 4)	intron (NM_001303043, intron 3 of 4)	5264	NM_030935	81628		NM_030935	ENSG00000166925	TSC22D4	SPACDR|THG-1|THG1|TILZ2	TSC22 domain family member 4	protein-coding
28089	chr10	43380701	43381350	+	0	NA	Intergenic	L1MD2|LINE|L1	9381	NM_001184963	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
212991	chr7	130991851	130992330	+	0	NA	intron (NR_109855, intron 2 of 4)	intron (NR_109855, intron 2 of 4)	78626	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
199761	chr6	125832621	125832900	+	0	NA	intron (NM_001199621, intron 2 of 14)	intron (NM_001199621, intron 2 of 14)	-13902	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
93693	chr17	19379521	19379930	+	0	NA	intron (NM_002749, intron 2 of 6)	intron (NM_002749, intron 2 of 6)	1227	NM_139034	5598		NM_002749	ENSG00000166484	MAPK7	BMK1|ERK4|ERK5|PRKM7	mitogen-activated protein kinase 7	protein-coding
138025	chr2	201281701	201281900	+	0	NA	intron (NR_111983, intron 7 of 8)	intron (NR_111983, intron 7 of 8)	21264	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
1073	chr1	1917821	1918150	+	0	NA	TTS (NM_001330313)	TTS (NM_001330313)	1294	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
13470	chr1	114572451	114572750	+	0	NA	intron (NM_005872, intron 4 of 6)	intron (NM_005872, intron 4 of 6)	9015	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
49366	chr12	22334541	22336180	+	0	NA	promoter-TSS (NM_003034)	promoter-TSS (NM_003034)	-646	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
142078	chr20	2454501	2455060	+	0	NA	Intergenic	Intergenic	8267	NR_003684	100113378		NR_003684		SNORD119	-	small nucleolar RNA, C/D box 119	snoRNA
199490	chr6	118651001	118652230	+	0	NA	promoter-TSS (NM_001042475)	promoter-TSS (NM_001042475)	-24	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
19765	chr1	182080971	182081330	+	0	NA	Intergenic	L2a|LINE|L2	-19438	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
167797	chr3	133492271	133492750	+	0	NA	Intergenic	L1PA13|LINE|L1	-1364	NR_135276	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
175560	chr4	75628021	75628280	+	0	NA	intron (NM_003948, intron 1 of 11)	AluY|SINE|Alu	2378	NM_003948	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
137540	chr2	197221171	197221330	+	0	NA	intron (NM_153697, intron 1 of 9)	AluSx|SINE|Alu	23259	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
111459	chr19	3876901	3877200	+	0	NA	Intergenic	Intergenic	-3635	NM_033064	85300		NM_033064	ENSG00000167654	ATCAY	BNIP-H|CLAC	ATCAY kinesin light chain interacting caytaxin	protein-coding
222694	chr8	141278351	141278880	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	24048	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
86018	chr16	57483271	57483430	+	0	NA	intron (NM_001369618, intron 1 of 7)	AluJr|SINE|Alu	-2973	NM_001369619	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
31634	chr10	97389051	97389730	+	0	NA	intron (NM_001284337, intron 3 of 30)	AluY|SINE|Alu	11950	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
177399	chr4	112277421	112277880	+	0	NA	3' UTR (NM_052864, exon 2 of 2)	3' UTR (NM_052864, exon 2 of 2)	8254	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
139153	chr2	219124021	219124900	+	0	NA	intron (NR_165304, intron 5 of 8)	intron (NR_165304, intron 5 of 8)	36095	NM_001377498	79840		NM_024782	ENSG00000187736	NHEJ1	XLF	non-homologous end joining factor 1	protein-coding
4186	chr1	19433701	19434280	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	50305	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
20808	chr1	201209351	201209850	+	0	NA	exon (NM_001164586, exon 12 of 24)	exon (NM_001164586, exon 12 of 24)	18776	NM_001367841	91156		NM_178275	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin like and fibronectin type III domain containing 1	protein-coding
162742	chr3	49046901	49047500	+	0	NA	exon (NM_001320583, exon 4 of 10)	exon (NM_001320583, exon 4 of 10)	-17802	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
206444	chr7	32876371	32876530	+	0	NA	intron (NM_015483, intron 2 of 3)	L2|LINE|L2	15310	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
107374	chr18	46042021	46042280	+	0	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	30110	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
73984	chr15	52015851	52016350	+	0	NA	intron (NR_156732, intron 1 of 1)	(CA)n|Simple_repeat|Simple_repeat	2995	NR_156732	112543478		NR_156732	ENSG00000259438	MAPK6-DT	lncMAPK6	MAPK6 divergent transcript	ncRNA
214482	chr7	150380851	150380950	+	0	NA	intron (NM_173680, intron 1 of 2)	LTR39|LTR|ERV1	1570	NM_173680	285971		NM_173680	ENSG00000196456	ZNF775	-	zinc finger protein 775	protein-coding
97169	chr17	42640451	42640550	+	0	NA	Intergenic	AluJr|SINE|Alu	-18784	NM_001320509	27175		NM_016437	ENSG00000037042	TUBG2	-	tubulin gamma 2	protein-coding
143886	chr20	32571721	32572230	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	13358	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
77266	chr15	81388351	81388450	+	0	NA	intron (NR_120365, intron 6 of 6)	intron (NR_120365, intron 6 of 6)	-14187	NM_001080532	342125		NM_181841	ENSG00000188869	TMC3	-	transmembrane channel like 3	protein-coding
14159	chr1	121234271	121234630	+	0	NA	intron (NM_001271872, intron 2 of 9)	intron (NM_001271872, intron 2 of 9)	49475	NM_001271872	653464		NM_001271872	ENSG00000171943	SRGAP2C	SRGAP2P1	SLIT-ROBO Rho GTPase activating protein 2C	protein-coding
36030	chr11	2920971	2921130	+	0	NA	intron (NM_183233, intron 8 of 10)	AluY|SINE|Alu	8370	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
52800	chr12	56726571	56727080	+	0	NA	Intergenic	AluSp|SINE|Alu	-1526	NM_001113202	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
195932	chr6	41894521	41896040	+	0	NA	promoter-TSS (NM_018561)	promoter-TSS (NM_018561)	95	NM_018561	25862		NM_018561	ENSG00000164663	USP49	-	ubiquitin specific peptidase 49	protein-coding
76463	chr15	74846721	74847430	+	0	NA	intron (NM_001320778, intron 8 of 9)	L1M4|LINE|L1	-3919	NM_001284364	25989		NM_001099436	ENSG00000140474	ULK3	-	unc-51 like kinase 3	protein-coding
112141	chr19	5613571	5614250	+	0	NA	intron (NM_014649, intron 4 of 20)	intron (NM_014649, intron 4 of 20)	8866	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
101870	chr17	74276401	74276600	+	0	NA	intron (NM_001172810, intron 1 of 13)	intron (NM_001172810, intron 1 of 13)	2266	NM_023036	64446		NM_023036	ENSG00000171595	DNAI2	CILD9|DIC2|oda6	dynein axonemal intermediate chain 2	protein-coding
222793	chr8	142277271	142277630	+	0	NA	intron (NM_145003, intron 11 of 13)	intron (NM_145003, intron 11 of 13)	79094	NR_024378	619434		NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
165319	chr3	87771301	87771730	+	0	NA	Intergenic	L1PB4|LINE|L1	-21191	NM_001322208	3355		NM_000866	ENSG00000179097	HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	5-hydroxytryptamine receptor 1F	protein-coding
101345	chr17	66965321	66965950	+	0	NA	intron (NM_014405, intron 1 of 3)	CpG	928	NM_014405	27092		NM_014405	ENSG00000075461	CACNG4	-	calcium voltage-gated channel auxiliary subunit gamma 4	protein-coding
32436	chr10	102511901	102512130	+	0	NA	intron (NM_001178133, intron 2 of 10)	MIR|SINE|MIR	8043	NM_001178133	51684		NM_016169	ENSG00000107882	SUFU	BCNS2|JBTS32|PRO1280|SUFUH|SUFUXL	SUFU negative regulator of hedgehog signaling	protein-coding
20101	chr1	187072601	187073480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-19802	NR_126347	104169671		NR_126347	ENSG00000230426	LINC01036	-	long intergenic non-protein coding RNA 1036	ncRNA
82021	chr16	11976171	11977480	+	0	NA	promoter-TSS (NM_001376490)	promoter-TSS (NM_001376490)	91	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
52461	chr12	55951971	55952130	+	0	NA	exon (NM_201444, exon 19 of 24)	exon (NM_201444, exon 19 of 24)	13992	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
46657	chr11	128705521	128705880	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-9677	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
2866	chr1	11337501	11337930	+	0	NA	Intergenic	Intergenic	64517	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
145126	chr20	38812571	38812730	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	6953	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
175717	chr4	77385351	77385700	+	0	NA	Intergenic	Intergenic	-126228	NM_006419	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
204746	chr7	5575001	5575400	+	0	NA	Intergenic	Intergenic	-17616	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
180148	chr5	1373771	1374730	+	0	NA	intron (NR_125810, intron 1 of 1)	AluJb|SINE|Alu	5823	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
65020	chr14	39098901	39099530	+	0	NA	intron (NM_006364, intron 1 of 19)	AluSc8|SINE|Alu	-3925	NR_146545	105370458		NR_146545	ENSG00000258651	SEC23A-AS1	-	SEC23A antisense RNA 1	ncRNA
94584	chr17	29705201	29705800	+	0	NA	intron (NM_033389, intron 2 of 14)	L2a|LINE|L2	55932	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
40118	chr11	62822121	62822730	+	0	NA	intron (NM_001244666, intron 10 of 10)	L2a|LINE|L2	9626	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
153928	chr22	30329301	30329930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2674	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
39771	chr11	61913521	61913980	+	0	NA	intron (NM_001271686, intron 1 of 8)	L2a|LINE|L2	3816	NM_013401	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
31353	chr10	93386721	93387380	+	0	NA	intron (NM_133337, intron 18 of 52)	LTR104_Mam|LTR|Gypsy	95284	NM_133337	26509		NM_013451	ENSG00000138119	MYOF	FER1L3|HAE7	myoferlin	protein-coding
15382	chr1	150160251	150160750	+	0	NA	promoter-TSS (NR_135098)	promoter-TSS (NR_135098)	-228	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
33805	chr10	123156201	123156800	+	0	NA	intron (NM_004725, intron 3 of 7)	intron (NM_004725, intron 3 of 7)	2098	NM_004725	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
161008	chr3	37430871	37431380	+	0	NA	intron (NR_126512, intron 6 of 6)	L1PA6|LINE|L1	19987	NM_001302831	339883		NM_178339	ENSG00000198590	APRG1	C3orf35	APRG1 tumor suppressor candidate	ncRNA
33491	chr10	119102801	119104830	+	0	NA	promoter-TSS (NM_001303111)	promoter-TSS (NM_001303111)	-298	NR_130122	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
176207	chr4	83795051	83795150	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	258992	NM_032717	84803		NM_032717	ENSG00000138678	GPAT3	AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1	glycerol-3-phosphate acyltransferase 3	protein-coding
164688	chr3	67649121	67649380	+	0	NA	intron (NM_001177599, intron 1 of 10)	intron (NM_001177599, intron 1 of 10)	5362	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
60908	chr13	46170371	46171430	+	0	NA	intron (NM_002298, intron 1 of 15)	L2b|LINE|L2	11277	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
40811	chr11	64915701	64918730	+	0	NA	promoter-TSS (NM_001367972)	promoter-TSS (NM_001367972)	-6	NM_001367971	23130		NM_015104	ENSG00000110046	ATG2A	BLTP4A	autophagy related 2A	protein-coding
79120	chr16	213351	213730	+	0	NA	intron (NM_018032, intron 3 of 8)	AluSx|SINE|Alu	15909	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
44530	chr11	107860621	107861000	+	0	NA	Intergenic	MER92B|LTR|ERV1	-2023	NM_017515	54733		NM_017515	ENSG00000110660	SLC35F2	HSNOV1	solute carrier family 35 member F2	protein-coding
92894	chr17	16443451	16443780	+	0	NA	exon (NM_001113567, exon 4 of 4)	exon (NM_001113567, exon 4 of 4)	2389	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
225119	chr9	33468601	33468800	+	0	NA	promoter-TSS (NR_106910)	promoter-TSS (NR_106910)	-765	NR_106910	102465512		NR_106910	ENSG00000275651	MIR6851	hsa-mir-6851	microRNA 6851	ncRNA
164415	chr3	58581351	58581450	+	0	NA	intron (NM_001282714, intron 2 of 4)	intron (NM_001282714, intron 2 of 4)	-4009	NM_007177	11170		NM_007177	ENSG00000168309	FAM107A	DRR1|TU3A	family with sequence similarity 107 member A	protein-coding
165013	chr3	71387721	71388180	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-83179	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
15518	chr1	150507201	150507400	+	0	NA	promoter-TSS (NM_001202858)	promoter-TSS (NM_001202858)	-809	NM_022664	1893		NM_004425	ENSG00000143369	ECM1	URBWD	extracellular matrix protein 1	protein-coding
18146	chr1	160752921	160753300	+	0	NA	exon (NM_001282595, exon 6 of 6)	exon (NM_001282595, exon 6 of 6)	13863	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
56559	chr12	117051371	117051600	+	0	NA	intron (NM_001168325, intron 2 of 6)	intron (NM_001168325, intron 2 of 6)	47931	NR_031766	54997		NM_017899	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
143507	chr20	31515771	31516250	+	0	NA	intron (NM_178580, intron 1 of 12)	intron (NM_178580, intron 1 of 12)	1568	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
63626	chr14	20657301	20658230	+	0	NA	Intergenic	Intergenic	-16074	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
80447	chr16	2669801	2670500	+	0	NA	non-coding (NR_040023, exon 2 of 3)	non-coding (NR_040023, exon 2 of 3)	3289	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
118526	chr19	36011021	36011280	+	0	NA	intron (NM_032878, intron 4 of 6)	intron (NM_032878, intron 4 of 6)	-2337	NM_001039876	163183		NM_153233	ENSG00000181392	SYNE4	C19orf46|DFNB76|KASH4|Nesp4	spectrin repeat containing nuclear envelope family member 4	protein-coding
129422	chr2	69382371	69383130	+	0	NA	intron (NM_001244710, intron 1 of 19)	intron (NM_001244710, intron 1 of 19)	4477	NM_002056	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
39948	chr11	62554351	62554450	+	0	NA	Intergenic	Intergenic	5906	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
188901	chr5	160035001	160035400	+	0	NA	exon (NM_003314, exon 3 of 8)	exon (NM_003314, exon 3 of 8)	26061	NM_003314	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
58024	chr12	124428401	124429150	+	0	NA	intron (NM_001077261, intron 12 of 47)	intron (NM_001077261, intron 12 of 47)	-91533	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
88464	chr16	85027071	85028200	+	0	NA	promoter-TSS (NM_001297766)	promoter-TSS (NM_001297766)	-116	NM_001286566	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
208245	chr7	65508501	65509280	+	0	NA	intron (NR_157837, intron 4 of 4)	CpG	46175	NR_157837	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
113400	chr19	9323401	9324980	+	0	NA	promoter-TSS (NM_001202407)	promoter-TSS (NM_001202407)	11	NM_001384659	100529215		NM_001172650	ENSG00000270011	ZNF559-ZNF177	-	ZNF559-ZNF177 readthrough	protein-coding
64008	chr14	22496401	22497600	+	0	NA	Intergenic	Intergenic	-14041	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
177093	chr4	108069601	108070000	+	0	NA	intron (NM_016269, intron 9 of 11)	AluSx|SINE|Alu	65136	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
230258	chr9	127906401	127907450	+	0	NA	TTS (NM_175039)	TTS (NM_175039)	-1577	NR_104629	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
188651	chr5	157240271	157240430	+	0	NA	intron (NM_005546, intron 10 of 16)	MER1B|DNA|hAT-Charlie	-25773	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
57751	chr12	122966071	122968430	+	0	NA	promoter-TSS (NM_001243013)	promoter-TSS (NM_001243013)	-741	NM_019624	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
106429	chr18	13568521	13569130	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-42289	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
200771	chr6	137863771	137864530	+	0	NA	intron (NR_049793, intron 3 of 3)	AluY|SINE|Alu	-3109	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
117221	chr19	19414071	19414300	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	8510	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
75864	chr15	69679601	69680100	+	0	NA	intron (NR_126438, intron 3 of 3)	intron (NR_126438, intron 3 of 3)	87650	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
236427	chrX	71301121	71301900	+	0	NA	promoter-TSS (NM_001303277)	promoter-TSS (NM_001303277)	-240	NM_012278	26548		NM_012278	ENSG00000147166	ITGB1BP2	CHORDC3|ITGB1BP|MELUSIN|MSTP015	integrin subunit beta 1 binding protein 2	protein-coding
121433	chr19	47026701	47026900	+	0	NA	intron (NM_002517, intron 3 of 11)	AluSx1|SINE|Alu	6963	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
137273	chr2	195318551	195318850	+	0	NA	Intergenic	Intergenic	-338258	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
142934	chr20	18587621	18589000	+	0	NA	intron (NM_080820, intron 1 of 5)	CpG	256	NM_080820	92675		NM_080820	ENSG00000125821	DTD1	C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68	D-aminoacyl-tRNA deacylase 1	protein-coding
48492	chr12	9849071	9849230	+	0	NA	Intergenic	L1P3|LINE|L1	20709	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
215756	chr8	1980471	1980780	+	0	NA	intron (NM_014867, intron 1 of 1)	intron (NM_014867, intron 1 of 1)	6948	NM_014867	9920		NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
174318	chr4	38658901	38659330	+	0	NA	intron (NR_026804, intron 1 of 7)	intron (NR_026804, intron 1 of 7)	-5084	NM_016531	51274		NM_016531	ENSG00000109787	KLF3	BKLF	KLF transcription factor 3	protein-coding
123041	chr19	51256401	51256600	+	0	NA	intron (NR_169627, intron 1 of 3)	L1MA9|LINE|L1	-1242	NM_001385467	284369		NM_173635	ENSG00000179213	SIGLECL1	C19orf75|SIGLEC23P|SIGLECP7	SIGLEC family like 1	protein-coding
204779	chr7	5612171	5612480	+	0	NA	Intergenic	AluJo|SINE|Alu	19509	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
134777	chr2	147490621	147491080	+	0	NA	Intergenic	Intergenic	-353667	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
84112	chr16	29661151	29661880	+	0	NA	Intergenic	AluSz|SINE|Alu	-1435	NM_001030288	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
43200	chr11	75419551	75420000	+	0	NA	intron (NM_001256802, intron 6 of 6)	AluSx|SINE|Alu	10854	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
69991	chr14	100012671	100012830	+	0	NA	intron (NM_001330221, intron 1 of 13)	intron (NM_001330221, intron 1 of 13)	41328	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
26378	chr10	16789651	16789950	+	0	NA	intron (NM_152724, intron 1 of 7)	intron (NM_152724, intron 1 of 7)	27624	NM_012425	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
77480	chr15	84559601	84559800	+	0	NA	intron (NR_003661, intron 1 of 5)	AluJo|SINE|Alu	-10949	NR_038274	100506874		NR_038273		LINC00933	-	long intergenic non-protein coding RNA 933	ncRNA
24743	chr1	248622571	248622830	+	0	NA	Intergenic	Intergenic	4428	NM_001001964	127077		NM_001001964	ENSG00000279301	OR2T11	OR2T11Q	olfactory receptor family 2 subfamily T member 11	protein-coding
72476	chr15	32535021	32535610	+	0	NA	Intergenic	Intergenic	-1444	NR_102756	100996255		NR_102756		LINC02256	-	long intergenic non-protein coding RNA 2256	ncRNA
29356	chr10	69572351	69572950	+	0	NA	exon (NM_020999, exon 2 of 2)	exon (NM_020999, exon 2 of 2)	772	NM_020999	50674		NM_020999	ENSG00000122859	NEUROG3	Atoh5|Math4B|NGN-3|bHLHa7|ngn3	neurogenin 3	protein-coding
38505	chr11	45882351	45882800	+	0	NA	3' UTR (NM_001127457, exon 12 of 12)	3' UTR (NM_001127457, exon 12 of 12)	-3076	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
195164	chr6	35776321	35777180	+	0	NA	non-coding (NR_104469, exon 1 of 2)	non-coding (NR_104469, exon 1 of 2)	152	NM_001286550	389383		NM_207409	ENSG00000196748	CLPSL2	AAAL3045|C6orf126|UNQ3045|dJ510O8.5	colipase like 2	protein-coding
126165	chr2	26352951	26353200	+	0	NA	intron (NR_137633, intron 1 of 9)	intron (NR_137633, intron 1 of 9)	-6286	NM_153835	165082		NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding
197977	chr6	90029251	90029550	+	0	NA	intron (NM_021813, intron 5 of 8)	L2a|LINE|L2	134931	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
169306	chr3	158722201	158722400	+	0	NA	intron (NM_206963, intron 1 of 5)	intron (NM_206963, intron 1 of 5)	10157	NM_206963	5918		NM_002888	ENSG00000118849	RARRES1	LXNL|PERG-1|TIG1	retinoic acid receptor responder 1	protein-coding
117843	chr19	31353901	31354580	+	0	NA	Intergenic	Intergenic	-4804	NR_138035	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
76070	chr15	72382271	72382430	+	0	NA	Intergenic	Intergenic	6237	NR_027262	80072		NM_025005	ENSG00000260339	HEXA-AS1	C15orf34	HEXA antisense RNA 1	ncRNA
57271	chr12	121625801	121627000	+	0	NA	promoter-TSS (NM_032790)	promoter-TSS (NM_032790)	-150	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
2185	chr1	8527251	8527350	+	0	NA	intron (NM_012102, intron 8 of 23)	intron (NM_012102, intron 8 of 23)	-32387	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
82391	chr16	16143171	16143530	+	0	NA	TTS (NM_004996)	TTS (NM_004996)	80121	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
62487	chr13	99404371	99404530	+	0	NA	Intergenic	Intergenic	48319	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
214995	chr7	152331201	152331480	+	0	NA	intron (NM_170606, intron 2 of 58)	AluJb|SINE|Alu	104663	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
71674	chr15	19674951	19675050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-607744	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
135901	chr2	171318551	171318650	+	0	NA	non-coding (NR_135568, exon 7 of 7)	non-coding (NR_135568, exon 7 of 7)	-87307	NM_001136554	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
30512	chr10	79329621	79329880	+	0	NA	Intergenic	L2c|LINE|L2	-17719	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
69782	chr14	99182101	99182300	+	0	NA	intron (NM_022898, intron 2 of 2)	MIR|SINE|MIR	89997	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
114145	chr19	11293501	11294100	+	0	NA	Intergenic	Intergenic	-2360	NM_012466	26526		NM_012466	ENSG00000130167	TSPAN16	TM-8|TM4-B|TM4SF16	tetraspanin 16	protein-coding
83907	chr16	28993451	28993750	+	0	NA	Intergenic	Intergenic	8548	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
71715	chr15	20346951	20347480	+	0	NA	Intergenic	AluYj4|SINE|Alu	64471	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
63448	chr13	114117651	114118180	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	14708	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
51185	chr12	50254421	50254880	+	0	NA	intron (NM_001113546, intron 1 of 10)	intron (NM_001113546, intron 1 of 10)	-20438	NR_031625	100302220		NR_031625	ENSG00000221604	MIR1293	MIRN1293|hsa-mir-1293|mir-1293	microRNA 1293	ncRNA
39251	chr11	57711351	57713380	+	0	NA	promoter-TSS (NM_001347896)	promoter-TSS (NM_001347896)	-42	NM_001317078	219541		NM_153450	ENSG00000156603	MED19	DT2P1G7|LCMR1|MED19AS	mediator complex subunit 19	protein-coding
17974	chr1	160455101	160455730	+	0	NA	Intergenic	L1MEf|LINE|L1	54851	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
99352	chr17	49880051	49881930	+	0	NA	Intergenic	Intergenic	-32973	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
87929	chr16	79286651	79287830	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	313497	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
135651	chr2	168371401	168371880	+	0	NA	Intergenic	L1MA3|LINE|L1	-84632	NM_203463	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
218574	chr8	55775871	55776030	+	0	NA	intron (NM_001363184, intron 1 of 11)	L2c|LINE|L2	2504	NM_024831	96764		NM_024831	ENSG00000137574	TGS1	NCOA6IP|PIMT|PIPMT	trimethylguanosine synthase 1	protein-coding
98300	chr17	46235751	46236050	+	0	NA	Intergenic	AluJb|SINE|Alu	-10533	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
124927	chr2	8544751	8545830	+	0	NA	Intergenic	Intergenic	38502	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
55012	chr12	96371921	96372450	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	28254	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
13063	chr1	111470001	111471850	+	0	NA	Intergenic	Intergenic	-3059	NM_174896	128346		NM_174896	ENSG00000143110	C1orf162	-	chromosome 1 open reading frame 162	protein-coding
101521	chr17	67831271	67831430	+	0	NA	intron (NM_182641, intron 1 of 27)	intron (NM_182641, intron 1 of 27)	5847	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
211020	chr7	102395601	102397200	+	0	NA	promoter-TSS (NM_024653)	promoter-TSS (NM_024653)	37	NM_024653	79706		NM_024653	ENSG00000128563	PRKRIP1	C114|KRBOX3	PRKR interacting protein 1	protein-coding
26667	chr10	22610321	22610580	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	103658	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
225060	chr9	33237351	33237650	+	0	NA	Intergenic	L3|LINE|CR1	-2667	NM_014471	27290		NM_014471	ENSG00000122711	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor Kazal type 4	protein-coding
4865	chr1	23751171	23751580	+	0	NA	exon (NM_003198, exon 4 of 11)	exon (NM_003198, exon 4 of 11)	8009	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
30388	chr10	78062171	78062800	+	0	NA	Intergenic	Intergenic	28622	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
17627	chr1	157047171	157047330	+	0	NA	promoter-TSS (NM_001377418)	promoter-TSS (NM_001377418)	-347	NM_001377418	9826		NM_014784	ENSG00000132694	ARHGEF11	GTRAP48|PDZ-RHOGEF	Rho guanine nucleotide exchange factor 11	protein-coding
95047	chr17	32520201	32520730	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	33472	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
50682	chr12	48859501	48859700	+	0	NA	intron (NM_014470, intron 4 of 4)	intron (NM_014470, intron 4 of 4)	6270	NM_014470	27289		NM_014470	ENSG00000172602	RND1	ARHS|RHO6|RHOS	Rho family GTPase 1	protein-coding
3129	chr1	12435551	12436250	+	0	NA	intron (NM_018156, intron 64 of 68)	intron (NM_018156, intron 64 of 68)	-71346	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
135378	chr2	160473771	160474680	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	19582	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
233608	chrX	356751	357050	+	0	NA	intron (NM_013239, intron 2 of 12)	intron (NM_013239, intron 2 of 12)	30007	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
13609	chr1	116389451	116390780	+	0	NA	intron (NM_000701, intron 8 of 22)	intron (NM_000701, intron 8 of 22)	6745	NM_001160234	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
167542	chr3	129319971	129320850	+	0	NA	intron (NR_026991, intron 3 of 4)	intron (NR_026991, intron 3 of 4)	-4124	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
184423	chr5	98929501	98930830	+	0	NA	non-coding (NR_036530, exon 1 of 1)	non-coding (NR_036530, exon 1 of 1)	1031	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
4567	chr1	22056821	22057350	+	0	NA	intron (NM_044472, intron 1 of 5)	MIR|SINE|MIR	4376	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
207326	chr7	44045801	44046080	+	0	NA	intron (NM_001284313, intron 1 of 10)	intron (NM_001284313, intron 1 of 10)	1238	NM_001014436	28988		NM_014063	ENSG00000136279	DBNL	ABP1|HIP-55|HIP55|SH3P7	drebrin like	protein-coding
185025	chr5	115546371	115546730	+	0	NA	Intergenic	Intergenic	-1775	NM_020177	56929		NM_020177	ENSG00000145780	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog C	protein-coding
103890	chr17	79795451	79795550	+	0	NA	exon (NM_020649, exon 5 of 5)	exon (NM_020649, exon 5 of 5)	1577	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
64173	chr14	22932621	22932880	+	0	NA	intron (NR_110002, intron 1 of 2)	AluSx|SINE|Alu	3141	NR_110002	101926933		NR_110002	ENSG00000257285	PRMT5-DT	-	PRMT5 divergent transcript	ncRNA
42193	chr11	67993421	67994800	+	0	NA	intron (NM_030930, intron 9 of 10)	intron (NM_030930, intron 9 of 10)	9987	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
162411	chr3	48244071	48244230	+	0	NA	intron (NM_016089, intron 1 of 3)	intron (NM_016089, intron 1 of 3)	3046	NM_016089	51385		NM_016089	ENSG00000164048	ZNF589	SZF1	zinc finger protein 589	protein-coding
71927	chr15	22836421	22836700	+	0	NA	Intergenic	Intergenic	-2081	NM_001184889	81614		NM_030922	ENSG00000140157	NIPA2	SLC57A2	NIPA magnesium transporter 2	protein-coding
58394	chr12	131898171	131898530	+	0	NA	intron (NM_003565, intron 3 of 27)	L1ME4b|LINE|L1	3728	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
216262	chr8	12438601	12439250	+	0	NA	intron (NR_040092, intron 2 of 5)	AluSx|SINE|Alu	1912	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
14357	chr1	144022871	144023030	+	0	NA	intron (NR_120535, intron 2 of 7)	MSTD|LTR|ERVL-MaLR	-49431	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
233958	chrX	2628201	2628400	+	0	NA	intron (NR_033380, intron 8 of 8)	intron (NR_033380, intron 8 of 8)	-12953	NR_037842	100359394		NR_037842	ENSG00000230542	LINC00102	NCRNA00102	long intergenic non-protein coding RNA 102	ncRNA
116551	chr19	18219071	18220080	+	0	NA	intron (NM_001330172, intron 8 of 15)	AluSq|SINE|Alu	4918	NM_001098819	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
41438	chr11	66076271	66076630	+	0	NA	intron (NM_018026, intron 1 of 23)	AluSz6|SINE|Alu	6178	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
126504	chr2	28410101	28411450	+	0	NA	intron (NM_005253, intron 3 of 3)	MIR3|SINE|MIR	-16103	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
206050	chr7	27152021	27153050	+	0	NA	promoter-TSS (NM_001384335)	promoter-TSS (NM_001384335)	48	NM_153631	3200		NM_030661	ENSG00000105997	HOXA3	HOX1|HOX1E	homeobox A3	protein-coding
23385	chr1	228181451	228181750	+	0	NA	3' UTR (NM_001010867, exon 3 of 3)	3' UTR (NM_001010867, exon 3 of 3)	7030	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
195505	chr6	37181971	37182130	+	0	NA	Intergenic	AluY|SINE|Alu	11898	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
227593	chr9	92664121	92665090	+	0	NA	intron (NM_022755, intron 1 of 12)	intron (NM_022755, intron 1 of 12)	5526	NM_022755	64768		NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
142162	chr20	2830351	2830650	+	0	NA	Intergenic	AluY|SINE|Alu	10155	NM_022760	64773		NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
97367	chr17	43312521	43312780	+	0	NA	Intergenic	AluY|SINE|Alu	-12419	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
190486	chr5	180328321	180329130	+	0	NA	intron (NM_005110, intron 6 of 18)	intron (NM_005110, intron 6 of 18)	24611	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
82856	chr16	21521451	21521950	+	0	NA	Intergenic	Intergenic	-1256	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
83336	chr16	24985201	24985600	+	0	NA	intron (NM_018054, intron 1 of 18)	MLT1D|LTR|ERVL-MaLR	29969	NM_001006634	55114		NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
29198	chr10	68978721	68979250	+	0	NA	intron (NM_004728, intron 13 of 14)	intron (NM_004728, intron 13 of 14)	-9818	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
150228	chr21	41179621	41179880	+	0	NA	non-coding (NR_148920, exon 1 of 1)	non-coding (NR_148920, exon 1 of 1)	5489	NR_148920	191585		NR_148920	ENSG00000280109	PLAC4	C21orf115|PRED78	placenta enriched 4	ncRNA
65390	chr14	50778971	50779600	+	0	NA	intron (NM_020921, intron 5 of 30)	L2c|LINE|L2	-42512	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
105155	chr17	82253601	82253800	+	0	NA	intron (NM_139062, intron 3 of 9)	intron (NM_139062, intron 3 of 9)	17032	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
5213	chr1	24980571	24980830	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-15690	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
156457	chr22	41249751	41250130	+	0	NA	intron (NM_001278651, intron 14 of 16)	intron (NM_001278651, intron 14 of 16)	3110	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
97678	chr17	44249951	44250050	+	0	NA	3' UTR (NM_000342, exon 20 of 20)	3' UTR (NM_000342, exon 20 of 20)	18135	NM_000342	6521		NM_000342	ENSG00000004939	SLC4A1	AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR	solute carrier family 4 member 1 (Diego blood group)	protein-coding
164293	chr3	57599771	57600300	+	0	NA	intron (NR_132370, intron 1 of 1)	AluJb|SINE|Alu	2246	NR_132369	106144532		NR_132369	ENSG00000272146	ARF4-AS1	-	ARF4 antisense RNA 1	ncRNA
66102	chr14	59586101	59586650	+	0	NA	Intergenic	MIRb|SINE|MIR	-9563	NM_001164399	729665		NM_001164399	ENSG00000151838	CCDC175	C14orf38|c14_5395	coiled-coil domain containing 175	protein-coding
129950	chr2	73924901	73925530	+	0	NA	Intergenic	MER51A|LTR|ERV1	-1665	NR_134898	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
6195	chr1	27453521	27454380	+	0	NA	intron (NM_006990, intron 1 of 8)	L1ME3E|LINE|L1	36217	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
67045	chr14	67671521	67671780	+	0	NA	intron (NM_006370, intron 1 of 5)	MSTD|LTR|ERVL-MaLR	2982	NM_006370	10490		NM_006370	ENSG00000100568	VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
113622	chr19	10320021	10320680	+	0	NA	intron (NM_133452, intron 9 of 12)	AluJr|SINE|Alu	-4335	NM_001031734	112812		NM_080665	ENSG00000267673	FDX2	FDX1L|MEOAL	ferredoxin 2	protein-coding
161464	chr3	42219521	42219780	+	0	NA	intron (NM_001042646, intron 15 of 15)	intron (NM_001042646, intron 15 of 15)	44297	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
37597	chr11	19714451	19715650	+	0	NA	promoter-TSS (NR_015384)	promoter-TSS (NR_015384)	-378	NR_015384	100126784		NR_015384		LEISA1	LEISA|NAV2-AS6	lncRNA enhancing IL-6/STAT3 signaling activation 1	ncRNA
29891	chr10	73095151	73095550	+	0	NA	intron (NM_001142595, intron 1 of 15)	intron (NM_001142595, intron 1 of 15)	1624	NM_001142596	5033		NM_000917	ENSG00000122884	P4HA1	P4HA	prolyl 4-hydroxylase subunit alpha 1	protein-coding
65365	chr14	50528771	50529330	+	0	NA	intron (NM_198794, intron 2 of 31)	intron (NM_198794, intron 2 of 31)	3519	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
29405	chr10	70165101	70165450	+	0	NA	intron (NM_001142648, intron 1 of 7)	AluYa5|SINE|Alu	5239	NM_001142648	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
219987	chr8	89899921	89900380	+	0	NA	Intergenic	L1MA3|LINE|L1	-1718	NM_004337	734		NM_004337	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
132740	chr2	109396321	109396580	+	0	NA	intron (NM_001099289, intron 3 of 9)	intron (NM_001099289, intron 3 of 9)	-82825	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	ncRNA
129600	chr2	70092701	70093000	+	0	NA	Intergenic	AluJb|SINE|Alu	5373	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
224242	chr9	5845751	5846380	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-12948	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
79731	chr16	1328851	1328950	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4745	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
229106	chr9	114389921	114390850	+	0	NA	intron (NM_030767, intron 1 of 21)	L2b|LINE|L2	-2403	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
46912	chr11	134230071	134230780	+	0	NA	intron (NM_052875, intron 1 of 5)	intron (NM_052875, intron 1 of 5)	-4964	NM_001372070	23310		NM_015261	ENSG00000151503	NCAPD3	CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6	non-SMC condensin II complex subunit D3	protein-coding
162597	chr3	48692121	48692380	+	0	NA	intron (NM_016291, intron 3 of 5)	L1ME1|LINE|L1	-6335	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
2451	chr1	9635171	9635530	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-16381	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
186626	chr5	138542321	138544450	+	0	NA	promoter-TSS (NR_157090)	promoter-TSS (NR_157090)	-149	NM_001364160	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
166156	chr3	111594301	111594630	+	0	NA	5' UTR (NM_024508, exon 2 of 2)	5' UTR (NM_024508, exon 2 of 2)	881	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
33780	chr10	122999451	122999750	+	0	NA	intron (NM_001372126, intron 1 of 3)	MER58A|DNA|hAT-Charlie	9087	NM_001271840	64376		NM_001271840	ENSG00000095574	IKZF5	PEGASUS|THC7|ZNFN1A5	IKAROS family zinc finger 5	protein-coding
141509	chr2	241202301	241202900	+	0	NA	intron (NM_001370694, intron 8 of 24)	intron (NM_001370694, intron 8 of 24)	13923	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
183751	chr5	81455451	81455550	+	0	NA	intron (NM_001256733, intron 9 of 15)	AluYb8|SINE|Alu	-61366	NM_130767	134526		NM_130767	ENSG00000172497	ACOT12	CACH-1|Cach|STARD15|THEAL	acyl-CoA thioesterase 12	protein-coding
157235	chr22	43289651	43289750	+	0	NA	intron (NM_173050, intron 4 of 21)	intron (NM_173050, intron 4 of 21)	13758	NR_134582	101927447		NR_134582	ENSG00000203527	SCUBE1-AS1	-	SCUBE1 antisense RNA 1	ncRNA
75374	chr15	65633371	65633950	+	0	NA	intron (NM_001301032, intron 1 of 7)	AluSx1|SINE|Alu	-9219	NM_001254740	9187		NM_004727	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 member 1	protein-coding
48965	chr12	12916071	12917050	+	0	NA	TTS (NR_030345)	TTS (NR_030345)	731	NR_030345	693199		NR_030345	ENSG00000283759	MIR614	MIRN614|hsa-mir-614	microRNA 614	ncRNA
41793	chr11	66860171	66860900	+	0	NA	TTS (NM_024036)	TTS (NM_024036)	3471	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
187065	chr5	140123271	140123730	+	0	NA	3' UTR (NM_005859, exon 1 of 1)	3' UTR (NM_005859, exon 1 of 1)	-2437	NM_001007189	492311		NM_001007189	ENSG00000182700	IGIP	C5orf53	IgA inducing protein	protein-coding
73943	chr15	51724851	51725030	+	0	NA	exon (NM_001363969, exon 2 of 3)	exon (NM_001363969, exon 2 of 3)	12122	NM_001363969	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
140111	chr2	231483601	231484880	+	0	NA	Intergenic	MIR|SINE|MIR	-19756	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
192244	chr6	20201921	20202580	+	0	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	10219	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
206834	chr7	37336151	37336850	+	0	NA	intron (NM_014800, intron 2 of 21)	intron (NM_014800, intron 2 of 21)	17168	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
205366	chr7	13908721	13909650	+	0	NA	intron (NR_120445, intron 11 of 14)	Charlie9|DNA|hAT-Charlie	77329	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
154061	chr22	30633671	30633830	+	0	NA	Intergenic	AluJo|SINE|Alu	-2031	NM_001318371	339665		NM_001001479	ENSG00000100036	SLC35E4	-	solute carrier family 35 member E4	protein-coding
167746	chr3	132034821	132035200	+	0	NA	5' UTR (NM_130808, exon 1 of 16)	5' UTR (NM_130808, exon 1 of 16)	432	NM_130808	131034		NM_130808	ENSG00000196353	CPNE4	COPN4|CPN4	copine 4	protein-coding
124402	chr19	58406571	58407200	+	0	NA	Intergenic	Intergenic	-1764	NM_173548	201514		NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
32574	chr10	103449871	103450300	+	0	NA	non-coding (NR_024552, exon 3 of 4)	non-coding (NR_024552, exon 3 of 4)	2285	NR_046344	51063		NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator family member 2	protein-coding
184231	chr5	96601751	96602150	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-60087	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
228827	chr9	112075671	112075830	+	0	NA	intron (NM_022486, intron 12 of 16)	AluJr|SINE|Alu	99547	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
211593	chr7	105806051	105807630	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	69745	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
160462	chr3	30355221	30355480	+	0	NA	Intergenic	Intergenic	-163518	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
48990	chr12	13196251	13197350	+	0	NA	promoter-TSS (NM_001423)	promoter-TSS (NM_001423)	74	NM_001423	2012		NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
40242	chr11	63613171	63614900	+	0	NA	5' UTR (NM_001128203, exon 2 of 5)	5' UTR (NM_001128203, exon 2 of 5)	402	NM_007069	11145		NM_007069	ENSG00000176485	PLAAT3	AdPLA|FPLD9|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3	phospholipase A and acyltransferase 3	protein-coding
144060	chr20	33671651	33671950	+	0	NA	intron (NM_031232, intron 2 of 11)	intron (NM_031232, intron 2 of 11)	2628	NM_031231	63941		NM_031231	ENSG00000125967	NECAB3	APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5	N-terminal EF-hand calcium binding protein 3	protein-coding
9471	chr1	50774871	50775100	+	0	NA	intron (NM_007051, intron 4 of 18)	intron (NM_007051, intron 4 of 18)	185282	NM_007051	11124		NM_007051	ENSG00000185104	FAF1	CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1	Fas associated factor 1	protein-coding
110190	chr19	1676651	1676950	+	0	NA	Intergenic	Intergenic	-24185	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
150110	chr21	37456471	37456730	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	36301	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
175332	chr4	68349101	68350400	+	0	NA	exon (NM_133370, exon 1 of 16)	exon (NM_133370, exon 1 of 16)	340	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
210696	chr7	100575051	100575730	+	0	NA	promoter-TSS (NM_001289933)	promoter-TSS (NM_001289933)	-171	NM_001289933								
84951	chr16	31361871	31362280	+	0	NA	exon (NM_001286375, exon 11 of 31)	exon (NM_001286375, exon 11 of 31)	6899	NM_000887	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
158815	chr3	9734771	9735200	+	0	NA	intron (NR_160918, intron 2 of 14)	MIRb|SINE|MIR	3235	NM_004634	7862		NM_004634	ENSG00000156983	BRPF1	BR140|IDDDFP	bromodomain and PHD finger containing 1	protein-coding
118895	chr19	38695051	38695680	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	47716	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
210940	chr7	101253871	101254030	+	0	NA	Intergenic	Intergenic	-8869	NM_016068	51024		NM_016068	ENSG00000214253	FIS1	CGI-135|TTC11	fission, mitochondrial 1	protein-coding
109111	chr18	80035401	80035900	+	0	NA	intron (NM_001171967, intron 1 of 5)	L1MC3|LINE|L1	1216	NM_001171967	79863		NM_024805	ENSG00000101546	RBFA	C18orf22|HsT169	ribosome binding factor A	protein-coding
204797	chr7	5631951	5632900	+	0	NA	intron (NM_207111, intron 15 of 16)	intron (NM_207111, intron 15 of 16)	39609	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
62039	chr13	88979721	88980080	+	0	NA	Intergenic	Intergenic	-255391	NR_047025	100874172		NR_047025		LINC00440	-	long intergenic non-protein coding RNA 440	ncRNA
181630	chr5	49376351	49376450	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1064888	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
134799	chr2	147937801	147938000	+	0	NA	intron (NM_001374270, intron 15 of 15)	intron (NM_001374270, intron 15 of 15)	82837	NM_001374272	5000		NM_002552	ENSG00000115947	ORC4	ORC4L|ORC4P	origin recognition complex subunit 4	protein-coding
197999	chr6	90079771	90080230	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	185531	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
78633	chr15	94248621	94248880	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	17189	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
5173	chr1	24935821	24936080	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-5674	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
86353	chr16	66520371	66521280	+	0	NA	intron (NR_073520, intron 5 of 8)	intron (NR_073520, intron 5 of 8)	29297	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
75	chr1	289921	290280	+	0	NA	Intergenic	Intergenic	-83503	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
236535	chrX	72124471	72124830	+	0	NA	intron (NM_001013627, intron 1 of 7)	MIR|SINE|MIR	7265	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
63555	chr14	20342431	20344400	+	0	NA	promoter-TSS (NR_002312)	promoter-TSS (NR_002312)	-4	NR_002312	85495		NR_002312	ENSG00000277209	RPPH1	H1RNA|RPPH1-1	ribonuclease P RNA component H1	ncRNA
17730	chr1	158945021	158945280	+	0	NA	intron (NM_198930, intron 7 of 7)	intron (NM_198930, intron 7 of 7)	13598	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
151885	chr22	18851101	18851400	+	0	NA	non-coding (NR_135922, exon 1 of 6)	non-coding (NR_135922, exon 1 of 6)	1132	NR_135922	102725072		NR_135922	ENSG00000293159	POM121L15P	-	POM121 transmembrane nucleoporin like 15, pseudogene	pseudo
172720	chr4	2807071	2807830	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	-4841	NM_001145855	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
88297	chr16	84088521	84089380	+	0	NA	intron (NM_003791, intron 8 of 22)	intron (NM_003791, intron 8 of 22)	27992	NM_003791	8720		NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SEDKF|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
60162	chr13	40143671	40143830	+	0	NA	Intergenic	MIR|SINE|MIR	-38059	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
160575	chr3	30702271	30702630	+	0	NA	Intergenic	MER4D|LTR|ERV1	95849	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
2643	chr1	10398201	10399900	+	0	NA	promoter-TSS (NM_001304452)	promoter-TSS (NM_001304452)	-14	NM_002631	5226		NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
82699	chr16	20743051	20743150	+	0	NA	Intergenic	AluY|SINE|Alu	-1282	NM_001304550	55623		NM_017736	ENSG00000066654	THUMPD1	NEDSOA|Tan1	THUMP domain containing 1	protein-coding
80051	chr16	1968451	1969180	+	0	NA	exon (NM_174903, exon 4 of 4)	exon (NM_174903, exon 4 of 4)	1959	NM_174903	146310		NM_174903	ENSG00000179580	RNF151	-	ring finger protein 151	protein-coding
180167	chr5	1445251	1446000	+	0	NA	promoter-TSS (NM_001044).2	promoter-TSS (NM_001044).2	-185	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
197124	chr6	57357251	57357880	+	0	NA	intron (NM_000947, intron 5 of 13)	L2c|LINE|L2	-32567	NR_036097	100422884		NR_036097	ENSG00000212017	MIR548U	-	microRNA 548u	ncRNA
137718	chr2	197640171	197640780	+	0	NA	intron (NM_144629, intron 3 of 8)	L1PA2|LINE|L1	35112	NM_144629	130132		NM_144629	ENSG00000162944	RFTN2	C2orf11|Raftlin-2	raftlin family member 2	protein-coding
113457	chr19	9857571	9858930	+	0	NA	promoter-TSS (NM_001304348)	promoter-TSS (NM_001304348)	-75	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
61690	chr13	74045421	74045680	+	0	NA	intron (NM_007249, intron 1 of 7)	L1MC3|LINE|L1	88379	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
87205	chr16	69441351	69441450	+	0	NA	intron (NM_030579, intron 1 of 4)	AluSc8|SINE|Alu	16781	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
19481	chr1	175003721	175003980	+	0	NA	intron (NM_014412, intron 1 of 5)	intron (NM_014412, intron 1 of 5)	3903	NM_014412	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
156622	chr22	41589071	41590750	+	0	NA	promoter-TSS (NM_002676)	promoter-TSS (NM_002676)	-70	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
198058	chr6	90213351	90213650	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	83343	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
194918	chr6	34882051	34882150	+	0	NA	intron (NM_005643, intron 2 of 4)	AluSq4|SINE|Alu	5942	NM_005643	6882		NM_005643	ENSG00000064995	TAF11	MGC:15243|PRO2134|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding
209785	chr7	87589701	87589980	+	0	NA	intron (NM_001348946, intron 3 of 27)	GA-rich|Low_complexity|Low_complexity	11044	NM_001348946	5243		NM_000927	ENSG00000085563	ABCB1	ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1|p-170	ATP binding cassette subfamily B member 1	protein-coding
186388	chr5	135035771	135035930	+	0	NA	intron (NR_161235, intron 1 of 5)	intron (NR_161235, intron 1 of 5)	-1622	NM_002653	5307		NM_002653	ENSG00000069011	PITX1	BFT|CCF|LBNBG|POTX|PTX1	paired like homeodomain 1	protein-coding
95110	chr17	34959221	34959480	+	0	NA	intron (NM_006584, intron 2 of 13)	AluJb|SINE|Alu	2110	NM_006584	10693		NM_006584	ENSG00000132141	CCT6B	CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303	chaperonin containing TCP1 subunit 6B	protein-coding
145242	chr20	38932921	38933180	+	0	NA	intron (NM_030919, intron 1 of 3)	intron (NM_030919, intron 1 of 3)	6633	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
129878	chr2	73108571	73108730	+	0	NA	intron (NM_001371272, intron 1 of 5)	intron (NM_001371272, intron 1 of 5)	4298	NM_001371272	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
177871	chr4	128631351	128631450	+	0	NA	Intergenic	Intergenic	-178300	NM_199320	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
12997	chr1	111030371	111030750	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-66616	NM_001006945	55791		NM_018372	ENSG00000121931	LRIF1	C1orf103|FSHD3|HBiX1|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
76825	chr15	77179251	77179910	+	0	NA	exon (NM_001385026, exon 7 of 10)	exon (NM_001385026, exon 7 of 10)	45824	NR_026813	81698		NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	ncRNA
1241	chr1	2285821	2286300	+	0	NA	intron (NM_003036, intron 1 of 6)	AluSx4|SINE|Alu	57741	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
61665	chr13	73952621	73953000	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	181119	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
215635	chr8	206071	206230	+	0	NA	Intergenic	TAR1|Satellite|telo	-25987	NM_001287255	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
162579	chr3	48674771	48674930	+	0	NA	intron (NM_184231, intron 12 of 12)	intron (NM_184231, intron 12 of 12)	11065	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
223480	chr8	144055351	144055650	+	0	NA	intron (NM_017570, intron 16 of 26)	intron (NM_017570, intron 16 of 26)	1880	NR_106905	102465509		NR_106905	ENSG00000277888	MIR6846	hsa-mir-6846	microRNA 6846	ncRNA
121843	chr19	48172301	48172500	+	0	NA	intron (NM_199341, intron 2 of 3)	AluSx1|SINE|Alu	1720	NM_199341	374920		NM_199341	ENSG00000185453	ZSWIM9	C19orf68	zinc finger SWIM-type containing 9	protein-coding
81030	chr16	4270301	4270500	+	0	NA	intron (NM_003223, intron 1 of 6)	intron (NM_003223, intron 1 of 6)	2623	NM_003223	7023		NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding
183939	chr5	87412201	87413780	+	0	NA	promoter-TSS (NR_157071)	promoter-TSS (NR_157071)	43	NM_001363539	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
13972	chr1	120534321	120535730	+	0	NA	intron (NR_144516, intron 20 of 43)	intron (NR_144516, intron 20 of 43)	-23660	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
94543	chr17	29584751	29586100	+	0	NA	intron (NM_001085454, intron 1 of 20)	intron (NM_001085454, intron 1 of 20)	4223	NM_014030	28964		NM_014030	ENSG00000108262	GIT1	p95-APP1	GIT ArfGAP 1	protein-coding
72115	chr15	28948321	28949300	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	14806	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
46151	chr11	123054071	123055100	+	0	NA	Intergenic	Intergenic	3571	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
205398	chr7	16396571	16396730	+	0	NA	intron (NR_160656, intron 2 of 7)	L1P5|LINE|L1	24888	NM_001101417	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
52785	chr12	56706001	56706600	+	0	NA	Intergenic	L1MB3|LINE|L1	-17892	NM_001282604	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
216036	chr8	9581401	9581680	+	0	NA	intron (NM_003747, intron 2 of 26)	L2|LINE|L2	25628	NM_003747	8658		NM_003747	ENSG00000173273	TNKS	ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5	tankyrase	protein-coding
139488	chr2	224521601	224521800	+	0	NA	intron (NM_003590, intron 3 of 15)	intron (NM_003590, intron 3 of 15)	48255	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
228545	chr9	101485971	101486200	+	0	NA	intron (NM_001303107, intron 1 of 2)	CpG	383	NM_001371233	84302		NM_032342	ENSG00000165152	PGAP4	C9orf125|TMEM246	post-GPI attachment to proteins GalNAc transferase 4	protein-coding
233345	chr9	137448561	137449600	+	0	NA	TTS (NR_106964)	TTS (NR_106964)	1006	NR_106964	102466223		NR_106964	ENSG00000284317	MIR7114	hsa-mir-7114	microRNA 7114	ncRNA
106810	chr18	23972021	23973080	+	0	NA	Intergenic	L2a|LINE|L2	-20337	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
143550	chr20	31592871	31593030	+	0	NA	Intergenic	AluY|SINE|Alu	-12339	NM_002165	3397		NM_002165	ENSG00000125968	ID1	ID|bHLHb24	inhibitor of DNA binding 1	protein-coding
13301	chr1	113308371	113308530	+	0	NA	Intergenic	Intergenic	-82065	NM_001142782	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
86634	chr16	67438071	67438430	+	0	NA	TTS (NM_000196)	TTS (NM_000196)	7129	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
4137	chr1	19333451	19334400	+	0	NA	Intergenic	(AAACA)n|Simple_repeat|Simple_repeat	21599	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
226356	chr9	69834321	69835030	+	0	NA	intron (NR_131757, intron 1 of 2)	intron (NR_131757, intron 1 of 2)	13858	NR_131756	138255		NM_001010940	ENSG00000204711	CFAP95	C9orf135	cilia and flagella associated protein 95	protein-coding
31018	chr10	88820701	88821530	+	0	NA	TTS (NM_001128215)	TTS (NM_001128215)	18385	NM_001128215	340654		NM_001128215	ENSG00000173239	LIPM	LIPL3|bA304I5.1	lipase family member M	protein-coding
233870	chrX	1552821	1553550	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-16000	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
207415	chr7	44454171	44454980	+	0	NA	intron (NM_015332, intron 2 of 5)	intron (NM_015332, intron 2 of 5)	36083	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
69586	chr14	97217951	97218930	+	0	NA	Intergenic	Intergenic	63583	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
30716	chr10	81724501	81724900	+	0	NA	Intergenic	LOR1b|LTR|ERV1	-150494	NM_001370082	10718		NM_001010848	ENSG00000185737	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding
20607	chr1	198925751	198925850	+	0	NA	intron (NR_040073, intron 1 of 2)	intron (NR_040073, intron 1 of 2)	11629	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
66094	chr14	59482851	59482950	+	0	NA	intron (NM_144581, intron 1 of 4)	intron (NM_144581, intron 1 of 4)	675	NM_001331159	112849		NM_144581	ENSG00000126790	L3HYPDH	C14orf149	trans-L-3-hydroxyproline dehydratase	protein-coding
139615	chr2	225040751	225041600	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	1293	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
227020	chr9	83837101	83837300	+	0	NA	exon (NM_001271927, exon 17 of 17)	exon (NM_001271927, exon 17 of 17)	-19363	NM_001135953	80318		NM_025211	ENSG00000165113	GKAP1	FKSG21|GKAP42	G kinase anchoring protein 1	protein-coding
46858	chr11	133928501	133929850	+	0	NA	intron (NM_001277285, intron 12 of 19)	L1MA3|LINE|L1	27793	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
78354	chr15	91303771	91303930	+	0	NA	Intergenic	Intergenic	-159489	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
153551	chr22	26596601	26597800	+	0	NA	Intergenic	Intergenic	-7068	NM_001362922	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
210668	chr7	100523601	100523980	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-15413	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
176250	chr4	86940571	86940730	+	0	NA	intron (NM_001166693, intron 1 of 20)	AluSx|SINE|Alu	5648	NM_001166693	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
207688	chr7	45342351	45342530	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	184649	NM_005856	10268		NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
49876	chr12	38797051	38797150	+	0	NA	intron (NM_153634, intron 6 of 19)	L1P1|LINE|L1	108491	NM_153634	144402		NM_153634	ENSG00000139117	CPNE8	-	copine 8	protein-coding
79577	chr16	997421	998780	+	0	NA	Intergenic	Intergenic	16330	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
124174	chr19	56120121	56122450	+	0	NA	promoter-TSS (NM_001002836)	promoter-TSS (NM_001002836)	10	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
65875	chr14	55097871	55099200	+	0	NA	Intergenic	Intergenic	-30717	NM_001357678	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
66968	chr14	65959071	65959650	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	488258	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
237394	chrX	119516221	119516590	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-47285	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
213240	chr7	133894951	133895200	+	0	NA	intron (NM_021807, intron 11 of 17)	L1PA2|LINE|L1	-70187	NR_120513	101928861		NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
28955	chr10	63231071	63231230	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	38073	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
101958	chr17	74639571	74640130	+	0	NA	Intergenic	Intergenic	-16112	NM_181449	342510		NM_181449	ENSG00000186407	CD300E	CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2	CD300e molecule	protein-coding
10185	chr1	61588751	61589280	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-65227	NR_073400	414927		NR_073400		MGC34796	-	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene	pseudo
168121	chr3	138831771	138832330	+	0	NA	intron (NM_006219, intron 1 of 23)	intron (NM_006219, intron 1 of 23)	2878	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
105613	chr18	716351	716450	+	0	NA	Intergenic	L1ME2|LINE|L1	-3736	NR_148711	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
484	chr1	1166101	1167530	+	0	NA	promoter-TSS (NR_029639)	promoter-TSS (NR_029639)	-289	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
42016	chr11	67414701	67416200	+	0	NA	promoter-TSS (NM_020811)	promoter-TSS (NM_020811)	-228	NM_020811	57571		NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
17828	chr1	159899271	159899430	+	0	NA	TTS (NR_130464)	TTS (NR_130464)	729	NR_130464	100422852		NR_130464	ENSG00000266458	MIR4259	-	microRNA 4259	ncRNA
136303	chr2	174794971	174795130	+	0	NA	Intergenic	Intergenic	-30578	NM_000079	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
150363	chr21	42215721	42215980	+	0	NA	promoter-TSS (NM_207629)	promoter-TSS (NM_207629)	-227	NM_207629	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
38673	chr11	46395001	46395650	+	0	NA	Intergenic	Intergenic	-3549	NM_000741	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
147198	chr20	57348271	57348430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2905	NM_003610	8480		NM_003610	ENSG00000101146	RAE1	Gle2|MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1	ribonucleic acid export 1	protein-coding
46410	chr11	126353471	126353930	+	0	NA	intron (NR_033839, intron 1 of 1)	MIRc|SINE|MIR	1887	NR_033839	399972		NR_033839		GSEC	DCPS-AS1|ST3GAL4-AS1	G-quadruplex forming sequence containing lncRNA	ncRNA
224126	chr9	4681151	4681550	+	0	NA	intron (NM_017913, intron 1 of 6)	MIRc|SINE|MIR	1781	NM_017913	55664		NM_017913	ENSG00000106993	CDC37L1	CDC37B|HARC	cell division cycle 37 like 1, HSP90 cochaperone	protein-coding
45585	chr11	118884621	118885130	+	0	NA	intron (NM_001716, intron 1 of 1)	intron (NM_001716, intron 1 of 1)	983	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
231890	chr9	133040921	133041250	+	0	NA	intron (NM_001286709, intron 1 of 8)	LTR13|LTR|ERVK	10088	NM_012087	9328		NM_012087	ENSG00000148308	GTF3C5	TFIIIC63|TFIIICepsilon|TFiiiC2-63	general transcription factor IIIC subunit 5	protein-coding
124620	chr2	1221401	1221600	+	0	NA	intron (NM_018968, intron 9 of 16)	HERV17-int|LTR|ERV1	-191961	NM_000547	7173		NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
17121	chr1	156166251	156166750	+	0	NA	intron (NM_001370567, intron 9 of 13)	HAL1|LINE|L1	11952	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
101608	chr17	68182301	68183750	+	0	NA	Intergenic	Intergenic	-15635	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
108405	chr18	69900871	69901580	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	46648	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
182235	chr5	56951321	56952980	+	0	NA	promoter-TSS (NM_001297599)	promoter-TSS (NM_001297599)	-20	NM_152622	166968		NM_152622	ENSG00000155545	MIER3	-	MIER family member 3	protein-coding
235684	chrX	48683121	48684150	+	0	NA	promoter-TSS (NM_000377)	promoter-TSS (NM_000377)	-164	NM_000377	7454		NM_000377	ENSG00000015285	WAS	IMD2|SCNX|THC|THC1|WASP|WASPA	WASP actin nucleation promoting factor	protein-coding
152065	chr22	19721871	19722630	+	0	NA	exon (NM_002688, exon 11 of 12)	exon (NM_002688, exon 11 of 12)	-1289	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
104088	chr17	80258651	80259100	+	0	NA	Intergenic	Intergenic	-1977	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
118722	chr19	38243701	38244380	+	0	NA	Intergenic	Intergenic	12334	NM_001243947	94274		NM_033256	ENSG00000167641	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1 regulatory inhibitor subunit 14A	protein-coding
91459	chr17	4816171	4816330	+	0	NA	intron (NM_002663, intron 14 of 24)	AluSx1|SINE|Alu	9098	NM_002663	5338		NM_002663	ENSG00000129219	PLD2	PLD1C	phospholipase D2	protein-coding
102923	chr17	76579471	76579830	+	0	NA	intron (NM_006456, intron 1 of 8)	MSTD|LTR|ERVL-MaLR	6210	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
95451	chr17	36153171	36153330	+	0	NA	Intergenic	Intergenic	23328	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
105714	chr18	2696221	2696530	+	0	NA	intron (NM_015295, intron 8 of 47)	MER1B|DNA|hAT-Charlie	40649	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
189403	chr5	172762171	172762730	+	0	NA	non-coding (NR_161233, exon 4 of 4)	non-coding (NR_161233, exon 4 of 4)	6947	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
132518	chr2	106107451	106107980	+	0	NA	intron (NR_165308, intron 10 of 14)	intron (NR_165308, intron 10 of 14)	31166	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
97877	chr17	45054971	45055300	+	0	NA	intron (NM_001288654, intron 1 of 4)	intron (NM_001288654, intron 1 of 4)	-3503	NM_001288655	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
24784	chr1	248877071	248877680	+	0	NA	Intergenic	AluJb|SINE|Alu	-18290	NM_001350072	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
197670	chr6	85464151	85464500	+	0	NA	intron (NM_002526, intron 1 of 8)	intron (NM_002526, intron 1 of 8)	14242	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
85797	chr16	56959151	56959450	+	0	NA	Intergenic	MIRb|SINE|MIR	-2650	NM_001286085	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
238708	chrX	154093701	154094350	+	0	NA	intron (NM_004992, intron 1 of 3)	intron (NM_004992, intron 1 of 3)	2944	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
117433	chr19	19647301	19648050	+	0	NA	exon (NM_020410, exon 20 of 26)	exon (NM_020410, exon 20 of 26)	-4018	NM_001288999	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
72534	chr15	34324521	34324780	+	0	NA	intron (NM_133647, intron 1 of 24)	intron (NM_133647, intron 1 of 24)	-5830	NM_005135	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
67931	chr14	74712651	74713780	+	0	NA	promoter-TSS (NM_015962)	promoter-TSS (NM_015962)	71	NM_001318508	51077		NM_015962	ENSG00000119616	FCF1	Bka|C14orf111|CGI-35|UTP24	FCF1 rRNA-processing protein	protein-coding
8629	chr1	41683701	41684700	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-199517	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
167779	chr3	133416401	133417000	+	0	NA	intron (NM_003571, intron 1 of 6)	intron (NM_003571, intron 1 of 6)	16644	NM_003571	8419		NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding
235783	chrX	49117501	49119000	+	0	NA	intron (NM_015698, intron 4 of 10)	intron (NM_015698, intron 4 of 10)	5485	NM_015698	27238		NM_015698	ENSG00000068394	GPKOW	GPATC5|GPATCH5|Mos2|Spp2|T54	G-patch domain and KOW motifs	protein-coding
177377	chr4	112075201	112075750	+	0	NA	Intergenic	Intergenic	-69979	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
115261	chr19	14538201	14538780	+	0	NA	intron (NM_138501, intron 1 of 12)	intron (NM_138501, intron 1 of 12)	8896	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
7048	chr1	31952751	31953250	+	0	NA	Intergenic	Intergenic	-14632	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
215552	chr7	158799001	158800200	+	0	NA	intron (NM_020728, intron 1 of 21)	AluJo|SINE|Alu	29909	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
28437	chr10	48552001	48552200	+	0	NA	intron (NR_144642, intron 3 of 9)	MamRep564|Unknown|Unknown	-40511	NR_146782	100689073		NR_146782		ARHGAP22-IT1	-	ARHGAP22 intronic transcript 1	ncRNA
35334	chr11	1097101	1097300	+	0	NA	exon (NM_002457, exon 32 of 61)	exon (NM_002457, exon 32 of 61)	22325	NM_002457	4583		NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
121221	chr19	46624251	46624450	+	0	NA	intron (NM_000960, intron 1 of 2)	intron (NM_000960, intron 1 of 2)	739	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
27831	chr10	38355101	38355300	+	0	NA	Intergenic	PABL_A|LTR|ERV1	-1180	NR_003086	158160		NM_182829	ENSG00000290439	HSD17B7P2	HSD17B7|Hsd17b_2|bA291L22.1	hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2	pseudo
178045	chr4	139651271	139651850	+	0	NA	Intergenic	Intergenic	-14208	NM_001204367	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
219569	chr8	78805321	78805650	+	0	NA	promoter-TSS (NM_001199888)	promoter-TSS (NM_001199888)	-22	NM_000880	3574		NM_000880	ENSG00000104432	IL7	IL-7	interleukin 7	protein-coding
89645	chr16	89340251	89340550	+	0	NA	intron (NR_045839, intron 2 of 9)	AluSx|SINE|Alu	19948	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
54729	chr12	93673101	93673300	+	0	NA	Intergenic	L1MD3|LINE|L1	-4171	NM_001320100	8738		NM_003805	ENSG00000169372	CRADD	MRT34|RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding
39537	chr11	61105051	61105880	+	0	NA	intron (NM_014207, intron 1 of 10)	MIRb|SINE|MIR	2976	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
236902	chrX	86002071	86002230	+	0	NA	intron (NM_001320959, intron 2 of 14)	intron (NM_001320959, intron 2 of 14)	45156	NM_001362518	1121		NM_000390	ENSG00000188419	CHM	DXS540|GGTA|HSD-32|REP-1|TCD	CHM Rab escort protein	protein-coding
205730	chr7	23490201	23491330	+	0	NA	non-coding (NR_026676, exon 1 of 1)	non-coding (NR_026676, exon 1 of 1)	377	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
129657	chr2	70244871	70245400	+	0	NA	intron (NR_147217, intron 1 of 12)	AluSx|SINE|Alu	3493	NM_022037	7072		NM_022037	ENSG00000116001	TIA1	ALS26|TIA-1|WDM	TIA1 cytotoxic granule associated RNA binding protein	protein-coding
130460	chr2	85537121	85538100	+	0	NA	non-coding (NR_038942, exon 1 of 1)	non-coding (NR_038942, exon 1 of 1)	1276	NR_038942	100630918		NR_038942	ENSG00000286532	PARTICL	PARTICLE	promoter of MAT2A antisense radiation-induced circulating long non-coding RNA	ncRNA
146401	chr20	49318401	49319580	+	0	NA	Intergenic	CpG	38307	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
77791	chr15	87510271	87510430	+	0	NA	Intergenic	L1HS|LINE|L1	-66579	NR_026869	145978		NM_152454	ENSG00000259527	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
106204	chr18	11637451	11637750	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	17341	NR_106975	102465690		NR_106975	ENSG00000283492	MIR7153	hsa-mir-7153|mir-7153	microRNA 7153	ncRNA
127459	chr2	42203751	42204680	+	0	NA	intron (NM_019063, intron 1 of 22)	AluJr|SINE|Alu	-33984	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
130791	chr2	86857151	86857500	+	0	NA	intron (NM_172213, intron 2 of 5)	intron (NM_172213, intron 2 of 5)	-4500	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
84248	chr16	30005421	30006300	+	0	NA	TTS (NR_134855)	TTS (NR_134855)	5167	NM_003586	8448		NM_003586	ENSG00000149927	DOC2A	Doc2	double C2 domain alpha	protein-coding
219680	chr8	80529471	80529630	+	0	NA	Intergenic	Intergenic	43324	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
156400	chr22	41124751	41125050	+	0	NA	intron (NM_001362843, intron 2 of 29)	intron (NM_001362843, intron 2 of 29)	32308	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
119186	chr19	39425951	39426850	+	0	NA	3' UTR (NM_001351693, exon 20 of 20)	3' UTR (NM_001351693, exon 20 of 20)	9549	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
27138	chr10	28296351	28296650	+	0	NA	intron (NM_001318170, intron 1 of 16)	intron (NM_001318170, intron 1 of 16)	6564	NR_134518	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
66324	chr14	61421601	61422930	+	0	NA	intron (NM_006255, intron 2 of 13)	AluJr|SINE|Alu	100822	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
98471	chr17	47180851	47181150	+	0	NA	intron (NM_001353047, intron 2 of 18)	AluJb|SINE|Alu	8295	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
236652	chrX	75522721	75523450	+	0	NA	promoter-TSS (NM_001146257)	promoter-TSS (NM_001146257)	-48	NM_144969	158866		NM_144969	ENSG00000102383	ZDHHC15	DHHC15|MRX91	zinc finger DHHC-type palmitoyltransferase 15	protein-coding
177520	chr4	118539551	118539650	+	0	NA	intron (NR_003135, intron 3 of 7)	intron (NR_003135, intron 3 of 7)	23275	NR_003135	645455		NM_153243		CEP170P1	CEP170L|FAM68B|KIAA0470L	centrosomal protein 170 pseudogene 1	pseudo
207293	chr7	44003371	44004130	+	0	NA	intron (NM_175064, intron 2 of 6)	intron (NM_175064, intron 2 of 6)	2810	NM_175064	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
129907	chr2	73255851	73256350	+	0	NA	3' UTR (NM_001080410, exon 17 of 17)	3' UTR (NM_001080410, exon 17 of 17)	21792	NM_006429	10574		NM_006429	ENSG00000135624	CCT7	CCTETA|CCTH|NIP7-1|TCP1ETA	chaperonin containing TCP1 subunit 7	protein-coding
136009	chr2	172430551	172431150	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	3264	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
206007	chr7	26266951	26267050	+	0	NA	Intergenic	AluY|SINE|Alu	-24862	NM_013322	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
80826	chr16	3479701	3480200	+	0	NA	intron (NM_001317094, intron 3 of 3)	Charlie4a|DNA|hAT-Charlie	5519	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
35653	chr11	1856751	1857630	+	0	NA	intron (NM_002339, intron 1 of 10)	intron (NM_002339, intron 1 of 10)	2346	NR_036185	100423021		NR_036185	ENSG00000264493	MIR4298	-	microRNA 4298	ncRNA
194692	chr6	33689471	33690100	+	0	NA	intron (NM_002224, intron 50 of 57)	MER91B|DNA|hAT-Tip100	-8343	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
162546	chr3	48640021	48640280	+	0	NA	exon (NM_001407, exon 34 of 35)	exon (NM_001407, exon 34 of 35)	4130	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
11682	chr1	91835621	91835880	+	0	NA	intron (NR_036634, intron 2 of 17)	AluY|SINE|Alu	50401	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
26161	chr10	14240371	14240530	+	0	NA	intron (NR_134578, intron 2 of 3)	intron (NR_134578, intron 2 of 3)	90474	NM_018027	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
76599	chr15	75360171	75360800	+	0	NA	intron (NM_001256494, intron 13 of 25)	intron (NM_001256494, intron 13 of 25)	-6800	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
202322	chr6	157312521	157313380	+	0	NA	intron (NM_018452, intron 3 of 3)	intron (NM_018452, intron 3 of 3)	10569	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
233521	chrM	16101	16500	+	0	NA	Intergenic	Intergenic	-8786	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
228321	chr9	98253921	98254530	+	0	NA	intron (NM_018421, intron 1 of 12)	intron (NM_018421, intron 1 of 12)	1424	NR_051978	55357		NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
116928	chr19	18835821	18836680	+	0	NA	intron (NM_001297549, intron 1 of 23)	intron (NM_001297549, intron 1 of 23)	4291	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
77982	chr15	89412371	89412530	+	0	NA	intron (NR_160724, intron 2 of 2)	intron (NR_160724, intron 2 of 2)	12279	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
213573	chr7	139343801	139344200	+	0	NA	intron (NM_197964, intron 1 of 1)	intron (NM_197964, intron 1 of 1)	2663	NM_197964	154791		NM_197964	ENSG00000164898	FMC1	C7orf55|HSPC268	formation of mitochondrial complex V assembly factor 1 homolog	protein-coding
26868	chr10	24947471	24947830	+	0	NA	intron (NM_020200, intron 1 of 8)	intron (NM_020200, intron 1 of 8)	4956	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
172173	chr4	1228321	1229830	+	0	NA	intron (NM_001377193, intron 3 of 9)	intron (NM_001377193, intron 3 of 9)	18955	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
25975	chr10	11741871	11743030	+	0	NA	promoter-TSS (NM_024693)	promoter-TSS (NM_024693)	68	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
144119	chr20	33995421	33996400	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-1543	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
68855	chr14	91299421	91299980	+	0	NA	intron (NM_001080414, intron 21 of 29)	intron (NM_001080414, intron 21 of 29)	-45820	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
147166	chr20	56442321	56443330	+	0	NA	intron (NM_020356, intron 2 of 5)	intron (NM_020356, intron 2 of 5)	-25760	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
180239	chr5	1601751	1601850	+	0	NA	intron (NR_003713, intron 3 of 3)	intron (NR_003713, intron 3 of 3)	-7269	NR_003263	728609		NR_003263	ENSG00000291055	SDHAP3	SDHACL|SDHAL	SDHA pseudogene 3	pseudo
204542	chr7	4970851	4971150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2985	NR_015449	441191		NR_015449	ENSG00000196204	RNF216P1	RNF216L|hCG2040556	ring finger protein 216 pseudogene 1	pseudo
150069	chr21	37396571	37397230	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	-22005	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
164326	chr3	57804721	57805130	+	0	NA	intron (NR_165328, intron 2 of 22)	intron (NR_165328, intron 2 of 22)	47669	NM_001304421	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
70403	chr14	101971621	101972030	+	0	NA	intron (NM_001376, intron 1 of 77)	intron (NM_001376, intron 1 of 77)	7252	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
216584	chr8	22011401	22011600	+	0	NA	Intergenic	L1M5|LINE|L1	-12634	NM_001286680	10361		NM_182795	ENSG00000158806	NPM2	-	nucleophosmin/nucleoplasmin 2	protein-coding
57972	chr12	123938101	123938780	+	0	NA	intron (NM_001304958, intron 5 of 5)	intron (NM_001304958, intron 5 of 5)	33619	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
94088	chr17	27601621	27602280	+	0	NA	exon (NM_014238, exon 12 of 21)	exon (NM_014238, exon 12 of 21)	-29238	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
139951	chr2	230862871	230863030	+	0	NA	Intergenic	Charlie1|DNA|hAT-Charlie	-1235	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
142109	chr20	2657221	2657680	+	0	NA	TTS (NM_001330763)	TTS (NM_001330763)	511	NR_002738	26792		NR_002738	ENSG00000226572	SNORD57	RNU57|U57	small nucleolar RNA, C/D box 57	snoRNA
118486	chr19	35911971	35912130	+	0	NA	Intergenic	Intergenic	-3755	NM_003332	7305		NM_003332	ENSG00000011600	TYROBP	DAP12|KARAP|PLOSL|PLOSL1	transmembrane immune signaling adaptor TYROBP	protein-coding
203220	chr6	168356051	168356150	+	0	NA	Intergenic	Intergenic	-36323	NR_104425	168002		NM_214462	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled binding antagonist of beta catenin 2	protein-coding
57301	chr12	121656271	121656850	+	0	NA	intron (NM_173855, intron 2 of 5)	AluSz|SINE|Alu	13094	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
173593	chr4	10460151	10460550	+	0	NA	Intergenic	Intergenic	-2924	NM_001375817	85460		NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
216209	chr8	11913521	11913880	+	0	NA	Intergenic	Intergenic	-45613	NM_001384723	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
207401	chr7	44234801	44235000	+	0	NA	intron (NM_172079, intron 12 of 19)	intron (NM_172079, intron 12 of 19)	33922	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
43370	chr11	76947971	76948130	+	0	NA	intron (NM_001300955, intron 2 of 9)	intron (NM_001300955, intron 2 of 9)	-86348	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
19466	chr1	174964301	174966180	+	0	NA	intron (NM_001243764, intron 1 of 6)	intron (NM_001243764, intron 1 of 6)	462	NM_001243764	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
139601	chr2	225009971	225010350	+	0	NA	TTS (NR_039641)	TTS (NR_039641)	380	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
108742	chr18	77106171	77107130	+	0	NA	intron (NM_001025100, intron 1 of 3)	Kanga2_a|DNA|TcMar-Tc2	26133	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
157287	chr22	44207071	44207630	+	0	NA	3' UTR (NM_001137605, exon 14 of 14)	3' UTR (NM_001137605, exon 14 of 14)	26425	NM_022141	64098		NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding
122741	chr19	50094201	50094400	+	0	NA	Intergenic	L1P4|LINE|L1	-1691	NR_024229	100170216		NR_024229		SNAR-A10	-	small NF90 (ILF3) associated RNA A10	snRNA
26208	chr10	14564151	14565880	+	0	NA	intron (NM_001320736, intron 1 of 4)	FLAM_A|SINE|Alu	6984	NM_001320736	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
212193	chr7	117087621	117087880	+	0	NA	intron (NR_109980, intron 1 of 4)	L2b|LINE|L2	3031	NR_109980	93654		NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
15014	chr1	148261621	148262200	+	0	NA	Intergenic	LTR8|LTR|ERV1	-14839	NR_120331	101927468		NR_120331	ENSG00000227733	LOC101927468	-	uncharacterized LOC101927468	ncRNA
109564	chr19	888171	889980	+	0	NA	intron (NM_005481, intron 4 of 15)	intron (NM_005481, intron 4 of 15)	4112	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
141766	chr2	242009651	242009750	+	0	NA	intron (NR_110220, intron 3 of 3)	CpG	8491	NR_149023	285097		NM_178530	ENSG00000280119	LOC285097	-	uncharacterized FLJ38379	ncRNA
78513	chr15	92938251	92938980	+	0	NA	intron (NM_001042572, intron 6 of 12)	intron (NM_001042572, intron 6 of 12)	34216	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
69292	chr14	93086471	93087130	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	19348	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
111416	chr19	3777921	3778450	+	0	NA	exon (NM_002378, exon 14 of 14)	exon (NM_002378, exon 14 of 14)	-5957	NM_032753	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
151496	chr21	46333301	46333700	+	0	NA	intron (NM_006031, intron 2 of 46)	AluSc8|SINE|Alu	8833	NM_001315529	5116		NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
146293	chr20	49140521	49140780	+	0	NA	intron (NM_017453, intron 5 of 13)	L1MB4|LINE|L1	47684	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
98270	chr17	46194001	46194400	+	0	NA	promoter-TSS (NM_015443).2	promoter-TSS (NM_015443).2	627	NR_034172	644246		NR_034172	ENSG00000214401	KANSL1-AS1	-	KANSL1 antisense RNA 1	ncRNA
236587	chrX	73214021	73215500	+	0	NA	promoter-TSS (NM_021963)	promoter-TSS (NM_021963)	91	NM_021963	4674		NM_021963	ENSG00000186462	NAP1L2	BPX	nucleosome assembly protein 1 like 2	protein-coding
210818	chr7	100882801	100883100	+	0	NA	intron (NM_015908, intron 5 of 19)	intron (NM_015908, intron 5 of 19)	6765	NM_001015072	402682		NM_001015072	ENSG00000176125	UFSP1	UFSP	UFM1 specific peptidase 1 (inactive)	protein-coding
195479	chr6	37099101	37099500	+	0	NA	Intergenic	L2b|LINE|L2	-70852	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
106589	chr18	22172801	22173400	+	0	NA	intron (NM_005257, intron 2 of 6)	intron (NM_005257, intron 2 of 6)	3511	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
25099	chr10	3895171	3895330	+	0	NA	Intergenic	Intergenic	61300	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
147007	chr20	53574451	53575880	+	0	NA	non-coding (NR_110051, exon 6 of 6)	non-coding (NR_110051, exon 6 of 6)	18674	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
21091	chr1	203329171	203329330	+	0	NA	Intergenic	MIRc|SINE|MIR	21872	NR_103757	2331		NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding
90988	chr17	2713901	2714100	+	0	NA	Intergenic	Intergenic	1691	NR_136412	105371592		NR_136412		LOC105371592	-	uncharacterized LOC105371592	ncRNA
200452	chr6	135088821	135089530	+	0	NA	Intergenic	Intergenic	-34353	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
172645	chr4	2570521	2571400	+	0	NA	intron (NM_001366318, intron 1 of 20)	intron (NM_001366318, intron 1 of 20)	34313	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
89144	chr16	88519051	88519350	+	0	NA	intron (NM_153813, intron 4 of 9)	(GGTG)n|Simple_repeat|Simple_repeat	11853	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
15837	chr1	151346761	151348250	+	0	NA	promoter-TSS (NM_001379417)	promoter-TSS (NM_001379417)	-253	NM_001025603	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
151837	chr22	18515621	18516580	+	0	NA	TTS (NM_001355479)	TTS (NM_001355479)	2061	NM_001355479	728226		NM_001355479	ENSG00000274252	GGTLC3	GGT	gamma-glutamyltransferase light chain family member 3	protein-coding
8303	chr1	40055371	40055850	+	0	NA	intron (NM_001350484, intron 2 of 13)	AluJr|SINE|Alu	14584	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
139865	chr2	230611051	230611900	+	0	NA	Intergenic	Intergenic	89054	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
58528	chr12	132218921	132219580	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-13222	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
176132	chr4	83109661	83111380	+	0	NA	promoter-TSS (NM_001130716)	promoter-TSS (NM_001130716)	-631	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
112943	chr19	7707051	7707580	+	0	NA	Intergenic	Intergenic	-5169	NM_002002	2208		NM_002002	ENSG00000104921	FCER2	BLAST-2|CD23|CD23A|CLEC4J|FCE2|FCErII|IGEBF	Fc epsilon receptor II	protein-coding
38900	chr11	47414201	47414750	+	0	NA	exon (NM_001128225, exon 7 of 10)	exon (NM_001128225, exon 7 of 10)	5885	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
64504	chr14	24337901	24338130	+	0	NA	exon (NM_006871, exon 6 of 10)	exon (NM_006871, exon 6 of 10)	1976	NM_006871	11035		NM_006871	ENSG00000129465	RIPK3	RIP3	receptor interacting serine/threonine kinase 3	protein-coding
192877	chr6	27470771	27470930	+	0	NA	intron (NM_001318893, intron 2 of 5)	intron (NM_001318893, intron 2 of 5)	2048	NM_001318892	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
106660	chr18	23068071	23068230	+	0	NA	Intergenic	L2c|LINE|L2	-66414	NR_023359	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
221379	chr8	123392101	123392300	+	0	NA	intron (NM_014109, intron 1 of 27)	L2a|LINE|L2	4247	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
39952	chr11	62560371	62561800	+	0	NA	promoter-TSS (NR_037427)	promoter-TSS (NR_037427)	-779	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
165356	chr3	89107401	89107830	+	0	NA	promoter-TSS (NM_182644)	promoter-TSS (NM_182644)	-6	NM_182644	2042		NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
129582	chr2	70068101	70068330	+	0	NA	intron (NR_033872, intron 4 of 10)	intron (NR_033872, intron 4 of 10)	18800	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
206166	chr7	28035971	28036330	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-144307	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
69561	chr14	96795101	96795500	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2082	NM_003384	7443		NM_003384	ENSG00000100749	VRK1	HMNR10|PCH1|PCH1A	VRK serine/threonine kinase 1	protein-coding
32735	chr10	104304871	104305030	+	0	NA	TTS (NM_001191014)	TTS (NM_001191014)	-18414	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
90239	chr17	749351	749650	+	0	NA	intron (NM_015721, intron 1 of 1)	intron (NM_015721, intron 1 of 1)	2764	NM_015721	50628		NM_015721	ENSG00000179409	GEMIN4	HC56|HCAP1|HHRF-1|NEDMCR|p97	gem nuclear organelle associated protein 4	protein-coding
70136	chr14	100277501	100277900	+	0	NA	TTS (NR_106822)	TTS (NR_106822)	343	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
31703	chr10	97646171	97646330	+	0	NA	intron (NM_018425, intron 1 of 8)	AluSx1|SINE|Alu	5564	NM_018425	55361		NM_018425	ENSG00000155252	PI4K2A	NEDMSB|PI4KII|PIK42A	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
231642	chr9	131619571	131620180	+	0	NA	intron (NM_001377938, intron 10 of 25)	intron (NM_001377938, intron 10 of 25)	31528	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
6369	chr1	27864051	27864550	+	0	NA	Intergenic	Intergenic	-8243	NM_004848	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
140564	chr2	233311471	233311830	+	0	NA	intron (NM_000541, intron 2 of 15)	intron (NM_000541, intron 2 of 15)	3834	NM_000541	6295		NM_000541	ENSG00000130561	SAG	RP47|RP96|S-AG	S-antigen visual arrestin	protein-coding
158801	chr3	9701271	9701800	+	0	NA	intron (NM_001077525, intron 18 of 18)	AluJb|SINE|Alu	-2298	NM_001308388	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
37967	chr11	34686771	34686930	+	0	NA	Intergenic	L1PB1|LINE|L1	44478	NM_001378046	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
215687	chr8	796251	796550	+	0	NA	intron (NM_001346810, intron 1 of 14)	intron (NM_001346810, intron 1 of 14)	57852	NR_134292	401442		NR_134292	ENSG00000282375	LOC401442	-	uncharacterized LOC401442	ncRNA
170649	chr3	187105151	187105250	+	0	NA	Intergenic	Intergenic	34296	NM_052969	116832		NM_052969	ENSG00000163923	RPL39L	L39-2|RPL39L1	ribosomal protein L39 like	protein-coding
42228	chr11	68048571	68049200	+	0	NA	exon (NM_006019, exon 14 of 20)	exon (NM_006019, exon 14 of 20)	4091	NR_106811	102465451		NR_106811	ENSG00000275022	MIR6753	hsa-mir-6753	microRNA 6753	ncRNA
109105	chr18	79986321	79987130	+	0	NA	non-coding (NR_131175, exon 2 of 5)	non-coding (NR_131175, exon 2 of 5)	1838	NR_131175	10907		NM_006701	ENSG00000141759	TXNL4A	BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD	thioredoxin like 4A	protein-coding
24467	chr1	244010001	244010430	+	0	NA	intron (NR_033883, intron 5 of 11)	LTR16|LTR|ERVL	-38724	NM_001278196	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
194840	chr6	34416601	34416880	+	0	NA	TTS (NM_001014)	TTS (NM_001014)	9329	NM_001204091	6204		NM_001014	ENSG00000124614	RPS10	DBA9|S10|eS10	ribosomal protein S10	protein-coding
180494	chr5	14209321	14209950	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	66293	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
125900	chr2	24766601	24766800	+	0	NA	intron (NM_147233, intron 20 of 20)	GA-rich|Low_complexity|Low_complexity	-26415	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
2905	chr1	11677221	11677480	+	0	NA	intron (NM_006341, intron 4 of 8)	intron (NM_006341, intron 4 of 8)	3798	NM_006341	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
194375	chr6	32980591	32981100	+	0	NA	3' UTR (NM_005104, exon 13 of 13).3	3' UTR (NM_005104, exon 13 of 13).3	7761	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
206198	chr7	28197201	28197400	+	0	NA	intron (NR_034097, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	-16505	NM_175061	221895		NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
235061	chrX	40154921	40155280	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	22177	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
53730	chr12	68630551	68630980	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluJb|SINE|Alu	-3390	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
5047	chr1	24539801	24540550	+	0	NA	3' UTR (NM_001251977, exon 5 of 5)	3' UTR (NM_001251977, exon 5 of 5)	15849	NR_109781	100506985		NR_109781		NCMAP-DT	-	NCMAP divergent transcript	ncRNA
169421	chr3	161223551	161223650	+	0	NA	intron (NM_001320227, intron 2 of 16)	intron (NM_001320227, intron 2 of 16)	2289	NM_015938	51068		NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
95250	chr17	35431921	35433200	+	0	NA	promoter-TSS (NM_018042)	promoter-TSS (NM_018042)	-60	NM_018042	55106		NM_018042	ENSG00000172123	SLFN12	SLFN3	schlafen family member 12	protein-coding
229048	chr9	114335521	114336430	+	0	NA	TTS (NM_030767)	TTS (NM_030767)	6106	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
153449	chr22	25158971	25159330	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	-40708	NM_004076	1417		NM_004076	ENSG00000100053	CRYBB3	CATCN2|CRYB3|CTRCT22	crystallin beta B3	protein-coding
45482	chr11	118605351	118605850	+	0	NA	promoter-TSS (NM_015157)	promoter-TSS (NM_015157)	-836	NM_015157	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
86514	chr16	67117571	67118330	+	0	NA	intron (NM_025187, intron 1 of 15)	AluJb|SINE|Alu	8009	NM_001320540	80262		NM_025187	ENSG00000125149	PHAF1	C16orf6|C16orf70|LIN10|MYTHO|lin-10	phagosome assembly factor 1	protein-coding
236806	chrX	79159501	79160080	+	0	NA	intron (NM_032553, intron 2 of 2)	intron (NM_032553, intron 2 of 2)	15102	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
125650	chr2	19903321	19903580	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1467	NM_001008237	130502		NM_001008237	ENSG00000183891	TTC32	-	tetratricopeptide repeat domain 32	protein-coding
221073	chr8	116881121	116881550	+	0	NA	Intergenic	Intergenic	-6535	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
139739	chr2	229850271	229850880	+	0	NA	intron (NM_001348327, intron 4 of 41)	LTR12C|LTR|ERV1	71104	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
217397	chr8	28348121	28349850	+	0	NA	intron (NM_018660, intron 9 of 9)	intron (NM_018660, intron 9 of 9)	10338	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
209737	chr7	87187351	87187650	+	0	NA	intron (NR_024550, intron 12 of 17)	AluJr|SINE|Alu	32232	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
225156	chr9	33811651	33811750	+	0	NA	Intergenic	AluSx3|SINE|Alu	-5460	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
161179	chr3	39127701	39129050	+	0	NA	exon (NM_001105513, exon 12 of 28)	exon (NM_001105513, exon 12 of 28)	-9831	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
134508	chr2	143399601	143399800	+	0	NA	intron (NM_018460, intron 6 of 13)	MIRc|SINE|MIR	270281	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
148800	chr21	8241101	8241500	+	0	NA	intron (NR_003287, intron 1 of 2)	intron (NR_003287, intron 1 of 2)	-8205	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
183828	chr5	86305151	86305250	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	22756	NR_003719	285622		NR_003719		NBPF22P	-	NBPF member 22, pseudogene	pseudo
18392	chr1	161398871	161400850	+	0	NA	Intergenic	CpG	-31984	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
140105	chr2	231469321	231469830	+	0	NA	Intergenic	Intergenic	-5091	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
46211	chr11	123640901	123641280	+	0	NA	intron (NM_018400, intron 3 of 5)	intron (NM_018400, intron 3 of 5)	13534	NM_018400	55800		NM_018400	ENSG00000166257	SCN3B	ATFB16|BRGDA7|HSA243396|SCNB3	sodium voltage-gated channel beta subunit 3	protein-coding
72255	chr15	30566571	30567330	+	0	NA	Intergenic	Intergenic	-4469	NR_157597	102725021		NR_157593		ARHGAP11B-DT	-	ARHGAP11B divergent transcript	ncRNA
29223	chr10	69048001	69048600	+	0	NA	Intergenic	Intergenic	-39303	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
10684	chr1	72623371	72623530	+	0	NA	Intergenic	LTR50|LTR|ERVL	-340911	NM_173808	257194		NM_173808	ENSG00000172260	NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding
128279	chr2	54590601	54591000	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	32406	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
133040	chr2	112140201	112140600	+	0	NA	intron (NM_153214, intron 1 of 7)	intron (NM_153214, intron 1 of 7)	2015	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
160224	chr3	23947751	23948550	+	0	NA	intron (NM_001145425, intron 1 of 7)	L3|LINE|CR1	-1588	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
51643	chr12	53010001	53010200	+	0	NA	intron (NM_001300821, intron 1 of 14)	intron (NM_001300821, intron 1 of 14)	3644	NM_001330654	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
7874	chr1	36397121	36398400	+	0	NA	intron (NM_032881, intron 1 of 1)	CpG	148	NM_032881	84967		NM_032881	ENSG00000181817	LSM10	MST074|MSTP074	LSM10, U7 small nuclear RNA associated	protein-coding
106948	chr18	28781771	28781930	+	0	NA	Intergenic	Intergenic	-604720	NM_001792	1000		NM_001792	ENSG00000170558	CDH2	ACOGS|ADHD8|ARVD14|CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
212342	chr7	127447051	127447650	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-29533	NR_110024	100506682		NR_110024	ENSG00000226770	LINC03012	-	long intergenic non-protein coding RNA 3012	ncRNA
127325	chr2	39063701	39064200	+	0	NA	intron (NM_001382394, intron 2 of 22)	AluJb|SINE|Alu	57101	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
214522	chr7	150505071	150506050	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-9312	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
189291	chr5	172112201	172112600	+	0	NA	intron (NM_005990, intron 4 of 18)	L1ME3G|LINE|L1	75824	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
199555	chr6	118882651	118883030	+	0	NA	intron (NM_001378357, intron 8 of 13)	L1MB8|LINE|L1	-11312	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
188103	chr5	150369821	150370080	+	0	NA	intron (NM_000356, intron 6 of 25)	L2b|LINE|L2	12253	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
141798	chr20	288321	288900	+	0	NA	intron (NM_153269, intron 3 of 10)	L1MDa|LINE|L1	2140	NM_153269	140680		NM_080571	ENSG00000196476	C20orf96	dJ1103G7.2	chromosome 20 open reading frame 96	protein-coding
158665	chr3	5121871	5123830	+	0	NA	intron (NM_018184, intron 1 of 6)	CpG	558	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
3178	chr1	13699801	13701460	+	0	NA	intron (NM_001135610, intron 1 of 7)	CpG	442	NM_001135610	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
151468	chr21	46227071	46227400	+	0	NA	intron (NM_001145437, intron 2 of 20)	intron (NM_001145437, intron 2 of 20)	1539	NM_002340	4047		NM_002340	ENSG00000160285	LSS	APMR4|CTRCT44|HYPT14|OSC	lanosterol synthase	protein-coding
215719	chr8	1701071	1701650	+	0	NA	exon (NM_001346810, exon 15 of 15)	exon (NM_001346810, exon 15 of 15)	61974	NR_134302	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
185188	chr5	119371921	119372180	+	0	NA	intron (NM_014350, intron 1 of 1)	AluY|SINE|Alu	16031	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
73449	chr15	43328651	43328850	+	0	NA	exon (NM_014793, exon 1 of 1)	exon (NM_014793, exon 1 of 1)	-1601	NM_001324364	161823		NM_001012969	ENSG00000168803	ADAL	HsMAPDA	adenosine deaminase like	protein-coding
25127	chr10	4067221	4067480	+	0	NA	intron (NR_120632, intron 1 of 3)	intron (NR_120632, intron 1 of 3)	15624	NR_120632								
72614	chr15	37106721	37107180	+	0	NA	Intergenic	Intergenic	-5639	NM_001220482	4212		NM_002399	ENSG00000134138	MEIS2	CPCMR|HsT18361|MRG1	Meis homeobox 2	protein-coding
143778	chr20	32439251	32439980	+	0	NA	TTS (NM_001363734)	TTS (NM_001363734)	43875	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
25329	chr10	6231551	6232300	+	0	NA	intron (NM_001314063, intron 15 of 15)	intron (NM_001314063, intron 15 of 15)	28993	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
30176	chr10	74223571	74224350	+	0	NA	intron (NM_001202449, intron 2 of 9)	AluSz|SINE|Alu	47197	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
70909	chr14	104087321	104087580	+	0	NA	intron (NM_001080464, intron 1 of 15)	intron (NM_001080464, intron 1 of 15)	1750	NM_001080464	374569		NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT|LYSOLP|hASNase1	asparaginase	protein-coding
191623	chr6	12270971	12271130	+	0	NA	Intergenic	L1M1|LINE|L1	-19311	NM_001955	1906		NM_001955	ENSG00000078401	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
21321	chr1	204519571	204519730	+	0	NA	intron (NM_001204172, intron 1 of 2)	AluJb|SINE|Alu	3244	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
124745	chr2	6908401	6908600	+	0	NA	Intergenic	L1PB1|LINE|L1	-8912	NM_001349181	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
190526	chr5	180619951	180620050	+	0	NA	intron (NM_001354989, intron 17 of 29)	CpG-22961	-28501	NM_052863	92304		NM_052863	ENSG00000161055	SCGB3A1	HIN-1|HIN1|LU105|PnSP-2|UGRP2	secretoglobin family 3A member 1	protein-coding
182287	chr5	57298931	57300130	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	85456	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
86135	chr16	57687151	57687250	+	0	NA	intron (NM_170776, intron 11 of 11)	MIRb|SINE|MIR	-7606	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
72775	chr15	39917101	39917500	+	0	NA	intron (NM_001271854, intron 1 of 3)	AluSq2|SINE|Alu	2966	NM_001271854	11245		NM_007223	ENSG00000166073	GPR176	HB-954	G protein-coupled receptor 176	protein-coding
176964	chr4	103199651	103200080	+	0	NA	Intergenic	Intergenic	-1522	NM_001813	1062		NM_001813	ENSG00000138778	CENPE	CENP-E|KIF10|MCPH13|PPP1R61	centromere protein E	protein-coding
136236	chr2	174601971	174602330	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-3919	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
221346	chr8	123190871	123191030	+	0	NA	intron (NM_001288587, intron 1 of 3)	MLT1K|LTR|ERVL-MaLR	8285	NM_001288587	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
59587	chr13	27481771	27481930	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	-31248	NM_001166263	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
180006	chr5	994471	994630	+	0	NA	intron (NR_104614, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	2790	NR_104614	100506688		NM_001242737	ENSG00000215246	LINC02982	-	long intergenic non-protein coding RNA 2982	ncRNA
171240	chr3	195785501	195785950	+	0	NA	exon (NM_001322468, exon 6 of 42)	exon (NM_001322468, exon 6 of 42)	26204	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
41244	chr11	65786371	65788030	+	0	NA	5' UTR (NM_004561, exon 1 of 4)	5' UTR (NM_004561, exon 1 of 4)	137	NM_004561	5017		NM_004561	ENSG00000172818	OVOL1	HOVO1	ovo like transcriptional repressor 1	protein-coding
133454	chr2	119697271	119697830	+	0	NA	intron (NR_148341, intron 7 of 16)	AluSz|SINE|Alu	18349	NM_030577	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
96182	chr17	39732251	39732550	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1837	NM_001330206	84299		NM_032339	ENSG00000141741	MIEN1	C17orf37|C35|ORB3|RDX12|XTP4	migration and invasion enhancer 1	protein-coding
195446	chr6	36975771	36976330	+	0	NA	intron (NM_001271641, intron 6 of 11)	intron (NM_001271641, intron 6 of 11)	10146	NM_001271641	23787		NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
184583	chr5	102859951	102860250	+	0	NA	intron (NM_001364582, intron 1 of 24)	intron (NM_001364582, intron 1 of 24)	-5723	NM_138821	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
199632	chr6	121306001	121306330	+	0	NA	intron (NM_152730, intron 5 of 31)	intron (NM_152730, intron 5 of 31)	28315	NM_152730	221322		NM_152730	ENSG00000146350	TBC1D32	BROMI|C6orf170|C6orf171	TBC1 domain family member 32	protein-coding
80763	chr16	3167721	3167980	+	0	NA	Intergenic	Intergenic	-20354	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
163199	chr3	50227001	50228880	+	0	NA	TTS (NR_106714)	TTS (NR_106714)	504	NR_106714	102464817		NR_106714	ENSG00000275334	MIR5787	hsa-mir-5787	microRNA 5787	ncRNA
85549	chr16	53207771	53208530	+	0	NA	promoter-TSS (NM_001382354)	promoter-TSS (NM_001382354)	185	NM_001352157	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
31226	chr10	91800171	91800500	+	0	NA	intron (NM_025235, intron 1 of 26)	intron (NM_025235, intron 1 of 26)	1909	NM_025235	80351		NM_025235	ENSG00000107854	TNKS2	ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6	tankyrase 2	protein-coding
81541	chr16	9106551	9106650	+	0	NA	intron (NM_014117, intron 3 of 3)	intron (NM_014117, intron 3 of 3)	14956	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
74009	chr15	52139701	52140500	+	0	NA	intron (NM_001379343, intron 5 of 10)	intron (NM_001379343, intron 5 of 10)	-27325	NM_001306168	10017		NM_020396	ENSG00000137875	BCL2L10	BCL-B|Boo|Diva|bcl2-L-10	BCL2 like 10	protein-coding
223093	chr8	143424471	143425100	+	0	NA	Intergenic	Intergenic	5947	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
84576	chr16	30631871	30632030	+	0	NA	Intergenic	Intergenic	-18828	NM_001320464	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
158307	chr22	50405151	50405450	+	0	NA	intron (NM_001351648, intron 3 of 22)	intron (NM_001351648, intron 3 of 22)	-2142	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
71416	chr14	105563351	105564550	+	0	NA	Intergenic	Intergenic	32095	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
191724	chr6	13693421	13693680	+	0	NA	intron (NM_005493, intron 2 of 13)	AluSx|SINE|Alu	18285	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
192658	chr6	26194401	26194650	+	0	NA	Intergenic	Intergenic	2761	NM_001376937	8351		NM_003530	ENSG00000197409	H3C4	H3/b|H3C1|H3C10|H3C11|H3C12|H3C2|H3C3|H3C6|H3C7|H3C8|H3FB|HIST1H3D	H3 clustered histone 4	protein-coding
14707	chr1	145931371	145931530	+	0	NA	intron (NR_147182, intron 2 of 2)	AluSq2|SINE|Alu	-3966	NM_005105	9939		NM_005105	ENSG00000265241	RBM8A	BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1	RNA binding motif protein 8A	protein-coding
116765	chr19	18494001	18494850	+	0	NA	intron (NM_006532, intron 1 of 11)	AluSx1|SINE|Alu	27645	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
131118	chr2	90323251	90323550	+	0	NA	Intergenic	CpG	-685493	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
146415	chr20	49518651	49519150	+	0	NA	intron (NM_000961, intron 6 of 9)	intron (NM_000961, intron 6 of 9)	-36232	NM_004975	3745		NM_004975	ENSG00000158445	KCNB1	DEE26|DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
200920	chr6	139146471	139146900	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	11605	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
87865	chr16	77212801	77213730	+	0	NA	TTS (NM_001129979)	TTS (NM_001129979)	13857	NM_001129979	100130958		NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
174641	chr4	40452251	40452430	+	0	NA	intron (NM_001371113, intron 2 of 5)	intron (NM_001371113, intron 2 of 5)	49779	NR_039966	100616274		NR_039966	ENSG00000263642	MIR4802	-	microRNA 4802	ncRNA
217891	chr8	37878601	37879150	+	0	NA	intron (NM_025151, intron 1 of 4)	AluJr|SINE|Alu	20622	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
61164	chr13	49046071	49046230	+	0	NA	intron (NM_001079673, intron 2 of 25)	intron (NM_001079673, intron 2 of 25)	-64167	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
163042	chr3	49869151	49870430	+	0	NA	5' UTR (NM_024046, exon 1 of 11)	5' UTR (NM_024046, exon 1 of 11)	116	NM_024046	79012		NM_024046	ENSG00000164076	CAMKV	1G5|VACAMKL	CaM kinase like vesicle associated	protein-coding
179989	chr5	892101	893700	+	0	NA	promoter-TSS (NM_001375863)	promoter-TSS (NM_001375863)	16	NM_004237	9319		NM_004237	ENSG00000071539	TRIP13	16E1BP|MVA3|OOMD9|OZEMA9	thyroid hormone receptor interactor 13	protein-coding
146688	chr20	50531551	50531850	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	21317	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
126853	chr2	31903371	31903680	+	0	NA	intron (NM_001371920, intron 2 of 5)	intron (NM_001371920, intron 2 of 5)	-99545	NR_146994	105374449		NR_146994	ENSG00000223647	LINC01946	-	long intergenic non-protein coding RNA 1946	ncRNA
138188	chr2	202656571	202656830	+	0	NA	intron (NM_173511, intron 1 of 7)	L1MEf|LINE|L1	21731	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
95770	chr17	38671751	38672450	+	0	NA	3' UTR (NM_001130677, exon 1 of 1).2	3' UTR (NM_001130677, exon 1 of 1).2	2857	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
135103	chr2	157389851	157390150	+	0	NA	Intergenic	L1PA3|LINE|L1	-9491	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
192908	chr6	27605401	27606030	+	0	NA	Intergenic	tRNA-Leu-TTG|tRNA|tRNA	-88320	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
87890	chr16	78749671	78750430	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	650396	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19280	chr1	172745001	172745430	+	0	NA	Intergenic	Intergenic	86112	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
26186	chr10	14540501	14540700	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	-2058	NM_001320740	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
68380	chr14	78598071	78598350	+	0	NA	intron (NM_004796, intron 1 of 16)	intron (NM_004796, intron 1 of 16)	194491	NM_004796	9369		NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
151004	chr21	44424951	44425250	+	0	NA	promoter-TSS (NM_001320352)	promoter-TSS (NM_001320352)	-429	NM_001320352	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
232463	chr9	136196851	136197350	+	0	NA	3' UTR (NM_001363746, exon 6 of 6)	3' UTR (NM_001363746, exon 6 of 6)	4574	NM_001363746	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
18022	chr1	160571651	160572500	+	0	NA	intron (NM_003874, intron 1 of 6)	MIRb|SINE|MIR	7421	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
147834	chr20	62743301	62743700	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	33356	NR_046224	100652730		NR_046224	ENSG00000228705	LINC00659	-	long intergenic non-protein coding RNA 659	ncRNA
154684	chr22	36372451	36372780	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	15352	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
223399	chr8	143923521	143924200	+	0	NA	exon (NM_000445, exon 32 of 33)	exon (NM_000445, exon 32 of 33)	15737	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
238599	chrX	153911851	153912380	+	0	NA	intron (NM_001164741, intron 13 of 22)	(CTTT)n|Simple_repeat|Simple_repeat	7401	NM_001146151	554		NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|NDI1|V2R	arginine vasopressin receptor 2	protein-coding
108597	chr18	75222801	75223000	+	0	NA	intron (NM_001308210, intron 1 of 1)	AmnSINE2|SINE|tRNA-Deu	12103	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
4906	chr1	23828571	23828730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3191	NM_001166059	3155		NM_000191	ENSG00000117305	HMGCL	HL|HMGCL1	3-hydroxy-3-methylglutaryl-CoA lyase	protein-coding
11338	chr1	89545601	89546330	+	0	NA	intron (NM_001369819, intron 2 of 6)	L1MC5|LINE|L1	21136	NM_001369819	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
98750	chr17	48080271	48081050	+	0	NA	intron (NM_001127228, intron 1 of 4)	AluSx4|SINE|Alu	20526	NM_006807	10951		NM_006807	ENSG00000108468	CBX1	CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|Hp1beta|M31|MOD1|p25beta	chromobox 1	protein-coding
44457	chr11	104958271	104958830	+	0	NA	intron (NM_033306, intron 1 of 9)	L1MA8|LINE|L1	10024	NM_001225	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
163924	chr3	52685221	52686530	+	0	NA	promoter-TSS (NM_001366070)	promoter-TSS (NM_001366070)	38	NM_001350079	55193		NM_018313	ENSG00000163939	PBRM1	BAF180|PB1|RCC|SMARCH1	polybromo 1	protein-coding
151331	chr21	45608651	45609780	+	0	NA	Intergenic	Intergenic	15561	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
141330	chr2	240563171	240563530	+	0	NA	3' UTR (NM_001370465, exon 2 of 2)	3' UTR (NM_001370465, exon 2 of 2)	-2240	NR_148698	51281		NM_016552	ENSG00000144504	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding
99702	chr17	50858901	50859300	+	0	NA	Intergenic	AluSq2|SINE|Alu	7254	NM_001243885	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
105863	chr18	3069901	3070100	+	0	NA	intron (NM_019856, intron 36 of 36)	intron (NM_019856, intron 36 of 36)	-56856	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
128246	chr2	54555251	54555550	+	0	NA	intron (NM_003128, intron 2 of 35)	intron (NM_003128, intron 2 of 35)	-2994	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
40035	chr11	62694551	62695350	+	0	NA	intron (NR_037948, intron 4 of 11)	intron (NR_037948, intron 4 of 11)	-5420	NM_203422	221091		NM_203422	ENSG00000177363	LRRN4CL	-	LRRN4 C-terminal like	protein-coding
73813	chr15	48875601	48876000	+	0	NA	intron (NM_203349, intron 4 of 11)	Charlie3|DNA|hAT-Charlie	-2334	NM_014335	23741		NM_014335	ENSG00000255302	EID1	C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21	EP300 interacting inhibitor of differentiation 1	protein-coding
192371	chr6	24704101	24704500	+	0	NA	TTS (NM_030939)	TTS (NM_030939)	14854	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
116839	chr19	18588071	18590100	+	0	NA	intron (NM_001100419, intron 2 of 4)	CpG-14078	287	NM_001100418	55049		NM_017967	ENSG00000006015	REX1BD	C19orf60	required for excision 1-B domain containing	protein-coding
74663	chr15	61834021	61834680	+	0	NA	Intergenic	Intergenic	104432	NR_146448	100506530		NR_146448	ENSG00000259284	LINC02349	-	long intergenic non-protein coding RNA 2349	ncRNA
91953	chr17	7357001	7357400	+	0	NA	TTS (NM_001320436)	TTS (NM_001320436)	2044	NM_001320436	339168		NM_198154	ENSG00000182896	TMEM95	UNQ9390	transmembrane protein 95	protein-coding
219706	chr8	80957451	80958130	+	0	NA	Intergenic	Intergenic	-83009	NM_001033723	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
161146	chr3	38999951	39000250	+	0	NA	intron (NR_164473, intron 2 of 2)	intron (NR_164473, intron 2 of 2)	-49539	NM_014139	11280		NM_014139	ENSG00000168356	SCN11A	FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2	sodium voltage-gated channel alpha subunit 11	protein-coding
16049	chr1	152479951	152480330	+	0	NA	Intergenic	(GAGGG)n|Simple_repeat|Simple_repeat	-30663	NM_178438	254910		NM_178438	ENSG00000186207	LCE5A	LEP18|SPRL5A	late cornified envelope 5A	protein-coding
153476	chr22	25475621	25475880	+	0	NA	Intergenic	Intergenic	20104	NR_106875	102466198		NR_106875	ENSG00000277872	MIR6817	hsa-mir-6817	microRNA 6817	ncRNA
63234	chr13	113928321	113929400	+	0	NA	non-coding (NR_047495, exon 1 of 1)	non-coding (NR_047495, exon 1 of 1)	131	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
148214	chr20	63573551	63575300	+	0	NA	promoter-TSS (NM_001037335)	promoter-TSS (NM_001037335)	-186	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
154783	chr22	36741471	36741630	+	0	NA	intron (NR_134623, intron 2 of 3)	MLT1G1|LTR|ERVL-MaLR	34569	NM_006860	11020		NM_006860	ENSG00000100360	IFT27	BBS19|CFAP156|FAP156|RABL4|RAYL	intraflagellar transport 27	protein-coding
55384	chr12	104381821	104382330	+	0	NA	Intergenic	Intergenic	-74873	NM_018413	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
92407	chr17	8374871	8375430	+	0	NA	intron (NM_001304947, intron 1 of 1)	AluY|SINE|Alu	1554	NM_001304947	124751		NM_213597	ENSG00000184619	KRBA2	-	KRAB-A domain containing 2	protein-coding
101481	chr17	67509951	67510250	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-38515	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
53828	chr12	69358571	69358730	+	0	NA	Intergenic	AluY|SINE|Alu	-1060	NM_001300950	8089		NM_006530	ENSG00000127337	YEATS4	4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9	YEATS domain containing 4	protein-coding
76747	chr15	76341991	76342280	+	0	NA	3' UTR (NM_145805, exon 6 of 6)	3' UTR (NM_145805, exon 6 of 6)	5362	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
7524	chr1	34742571	34742950	+	0	NA	Intergenic	Intergenic	-12287	NM_005268	2709		NM_005268	ENSG00000189280	GJB5	CX31.1	gap junction protein beta 5	protein-coding
141284	chr2	240157771	240158380	+	0	NA	Intergenic	CpG	-17417	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
39617	chr11	61401421	61401880	+	0	NA	Intergenic	MIRb|SINE|MIR	9063	NM_001173990	51259		NM_016499	ENSG00000187049	TMEM216	HSPC244	transmembrane protein 216	protein-coding
44935	chr11	116742801	116743050	+	0	NA	Intergenic	Intergenic	30062	NM_032725	84811		NM_032725	ENSG00000137656	BUD13	Cwc26|fSAP71	BUD13 homolog	protein-coding
49689	chr12	30795071	30795700	+	0	NA	promoter-TSS (NR_040245)	promoter-TSS (NR_040245)	-296	NR_040245	100287314		NR_040245		LINC00941	lncIAPF|lncRNA-MUF	long intergenic non-protein coding RNA 941	ncRNA
29706	chr10	72068171	72068730	+	0	NA	intron (NM_014767, intron 6 of 11)	intron (NM_014767, intron 6 of 11)	20101	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
171573	chr3	196971071	196971400	+	0	NA	Intergenic	MER54A|LTR|ERVL	-2402	NM_025163	80235		NM_025163	ENSG00000119227	PIGZ	GPI-MT-IV|PIG-Z|SMP3	phosphatidylinositol glycan anchor biosynthesis class Z	protein-coding
53121	chr12	57830351	57830650	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	-5808	NR_029847	407016		NR_029847	ENSG00000207789	MIR26A2	MIRN26A2|mir-26a-2	microRNA 26a-2	ncRNA
99348	chr17	49872971	49873930	+	0	NA	Intergenic	Intergenic	-25433	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
170676	chr3	187739701	187740500	+	0	NA	intron (NM_001706, intron 1 of 9)	CpG	-3599	NM_001130845	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
122412	chr19	49446701	49446980	+	0	NA	intron (NM_017916, intron 7 of 8)	intron (NM_017916, intron 7 of 8)	4974	NM_017916	55011		NM_017916	ENSG00000104872	PIH1D1	DNAAF14|MOT48|NOP17|Pih1	PIH1 domain containing 1	protein-coding
108411	chr18	69934271	69934430	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	13523	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
9417	chr1	47710451	47710980	+	0	NA	Intergenic	CpG	272671	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
179548	chr4	185126521	185126930	+	0	NA	Intergenic	AluSx3|SINE|Alu	-16541	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
127541	chr2	42335701	42336180	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	24098	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
63452	chr13	114121521	114123180	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	10273	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
48829	chr12	12347071	12347630	+	0	NA	intron (NM_001363613, intron 1 of 4)	MER1A|DNA|hAT-Charlie	2892	NM_001363613	54682		NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
163177	chr3	50190301	50190700	+	0	NA	Intergenic	AluSc5|SINE|Alu	-1110	NM_144499	2779		NM_000172	ENSG00000114349	GNAT1	CSNB1G|CSNBAD3|GBT1|GNATR|HG1F	G protein subunit alpha transducin 1	protein-coding
226013	chr9	41647251	41647550	+	0	NA	promoter-TSS (NR_103714)	promoter-TSS (NR_103714)	-274	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
185453	chr5	131263111	131264930	+	0	NA	promoter-TSS (NM_001375635)	promoter-TSS (NM_001375635)	-33	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
151447	chr21	46153051	46153900	+	0	NA	TTS (NM_001350598)	TTS (NM_001350598)	2100	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
89183	chr16	88561271	88561430	+	0	NA	non-coding (NR_146877, exon 2 of 3)	non-coding (NR_146877, exon 2 of 3)	633	NR_146877	400555		NM_001001682		ZC3H18-AS1	C16orf85|LINC00859	ZC3H18 antisense RNA 1 (head to head)	ncRNA
166119	chr3	111261051	111261230	+	0	NA	Intergenic	L1MB2|LINE|L1	189324	NM_001243288	25945		NM_015480	ENSG00000177707	NECTIN3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3	nectin cell adhesion molecule 3	protein-coding
23418	chr1	228367771	228368330	+	0	NA	intron (NM_001271223, intron 98 of 115)	intron (NM_001271223, intron 98 of 115)	29059	NR_106800	102465444		NR_106800	ENSG00000284311	MIR6742	hsa-mir-6742	microRNA 6742	ncRNA
184055	chr5	91433651	91433950	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-50483	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
188915	chr5	160370221	160370730	+	0	NA	intron (NM_001366504, intron 1 of 3)	CpG	151	NM_001366504	114898		NM_031908	ENSG00000145861	C1QTNF2	CTRP2|zacrp2	C1q and TNF related 2	protein-coding
157051	chr22	42579451	42579750	+	0	NA	intron (NR_002184, intron 2 of 6)	AluSz|SINE|Alu	2411	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
146326	chr20	49227201	49227400	+	0	NA	intron (NM_017895, intron 7 of 20)	L1MC4a|LINE|L1	7884	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
78704	chr15	98127771	98128130	+	0	NA	Intergenic	Intergenic	-39197	NR_120325	101927332		NR_120325	ENSG00000259611	LINC01582	-	long intergenic non-protein coding RNA 1582	ncRNA
223520	chr8	144107451	144107750	+	0	NA	promoter-TSS (NM_001316309)	promoter-TSS (NM_001316309)	-139	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
238320	chrX	149524101	149524500	+	0	NA	Intergenic	Intergenic	15452	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
8678	chr1	41913051	41913550	+	0	NA	intron (NR_038260, intron 1 of 2)	Tigger12c|DNA|TcMar-Tigger	5622	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
143495	chr20	31186071	31187200	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-71029	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
153765	chr22	29479821	29480180	+	0	NA	promoter-TSS (NM_021076)	promoter-TSS (NM_021076)	-218	NM_021076	4744		NM_021076	ENSG00000100285	NEFH	CMT2CC|NFH	neurofilament heavy chain	protein-coding
181985	chr5	55214051	55214350	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	13115	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
85287	chr16	48608121	48609070	+	0	NA	intron (NM_153029, intron 1 of 6)	intron (NM_153029, intron 1 of 6)	1585	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
140282	chr2	232339951	232340250	+	0	NA	intron (NM_001257281, intron 13 of 13)	HAL1|LINE|L1	-38651	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
13751	chr1	116982851	116983150	+	0	NA	intron (NM_020440, intron 7 of 8)	intron (NM_020440, intron 7 of 8)	-18750	NM_001256111	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
106967	chr18	31937021	31937480	+	0	NA	intron (NM_014939, intron 1 of 28)	AluJb|SINE|Alu	5878	NM_014939	22878		NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex subunit 8	protein-coding
236969	chrX	101394251	101394650	+	0	NA	intron (NM_001199974, intron 3 of 3)	AluJb|SINE|Alu	3439	NM_021029	6173		NM_021029	ENSG00000241343	RPL36A	L36A|L44L|MIG6|RPL44|eL42	ribosomal protein L36a	protein-coding
24294	chr1	236535821	236536480	+	0	NA	intron (NM_201544, intron 2 of 9)	intron (NM_201544, intron 2 of 9)	-11642	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
147050	chr20	53662501	53663180	+	0	NA	Intergenic	Intergenic	54486	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
129264	chr2	68385401	68386250	+	0	NA	intron (NM_002664, intron 4 of 8)	L2c|LINE|L2	20543	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
140913	chr2	237706301	237706700	+	0	NA	intron (NM_001137551, intron 1 of 11)	intron (NM_001137551, intron 1 of 11)	14295	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
99506	chr17	50204451	50205150	+	0	NA	Intergenic	Intergenic	-3169	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
107823	chr18	54206251	54206750	+	0	NA	intron (NM_003927, intron 1 of 6)	intron (NM_003927, intron 1 of 6)	15912	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
219502	chr8	73966521	73967180	+	0	NA	intron (NM_001204858, intron 1 of 4)	intron (NM_001204858, intron 1 of 4)	5058	NM_001204861	6921		NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
228406	chr9	99181451	99181880	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	40277	NM_033087	85365		NM_033087	ENSG00000119523	ALG2	CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2	ALG2 alpha-1,3/1,6-mannosyltransferase	protein-coding
150002	chr21	37004351	37004850	+	0	NA	Intergenic	AluJb|SINE|Alu	-1550	NM_001317768	53820		NM_018962	ENSG00000183145	RIPPLY3	DSCR6	ripply transcriptional repressor 3	protein-coding
95934	chr17	38944571	38944930	+	0	NA	intron (NM_001008777, intron 7 of 10)	AluSc8|SINE|Alu	19582	NR_038847	100505576		NM_001414697	ENSG00000263874	LASP1NB	LINC00672	LASP1 neighbor	protein-coding
183104	chr5	74633101	74633680	+	0	NA	intron (NR_046318, intron 1 of 1)	intron (NR_046318, intron 1 of 1)	-6633	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
46842	chr11	133064171	133064330	+	0	NA	intron (NM_001012393, intron 1 of 7)	intron (NM_001012393, intron 1 of 7)	-120482	NM_001319105	4978		NM_002545	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule like	protein-coding
59249	chr13	23965701	23965900	+	0	NA	Intergenic	Intergenic	-14002	NM_001286792	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
28550	chr10	50603871	50604450	+	0	NA	intron (NM_147156, intron 1 of 10)	intron (NM_147156, intron 1 of 10)	19796	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
126289	chr2	27206151	27206830	+	0	NA	exon (NM_021095, exon 5 of 17)	exon (NM_021095, exon 5 of 17)	5778	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
21629	chr1	206590001	206591000	+	0	NA	Intergenic	Intergenic	21965	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
120461	chr19	44669551	44669850	+	0	NA	Intergenic	L2b|LINE|L2	-1752	NM_020219	56971		NM_020219	ENSG00000186567	CEACAM19	CEACM19|CEAL1	CEA cell adhesion molecule 19	protein-coding
25621	chr10	8077071	8077430	+	0	NA	Intergenic	Intergenic	22562	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
64713	chr14	34211821	34212080	+	0	NA	Intergenic	Intergenic	250290	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
229067	chr9	114350171	114350400	+	0	NA	intron (NM_001317952, intron 14 of 20)	intron (NM_001317952, intron 14 of 20)	20416	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
104125	chr17	80353671	80353830	+	0	NA	non-coding (NR_029376, exon 2 of 2)	non-coding (NR_029376, exon 2 of 2)	-61417	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
67232	chr14	68959951	68960250	+	0	NA	intron (NM_001130004, intron 1 of 21)	Tigger2|DNA|TcMar-Tigger	19202	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
70672	chr14	103079451	103079630	+	0	NA	Intergenic	Intergenic	-4670	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
31514	chr10	96719571	96721380	+	0	NA	promoter-TSS (NM_152309)	promoter-TSS (NM_152309)	39	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
14219	chr1	143206071	143206380	+	0	NA	Intergenic	Intergenic	216367	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
139528	chr2	224575801	224576700	+	0	NA	intron (NM_003590, intron 1 of 15)	intron (NM_003590, intron 1 of 15)	-6295	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
89728	chr16	89427001	89427430	+	0	NA	intron (NR_045839, intron 1 of 9)	L1M4|LINE|L1	-3703	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109282	chr19	547751	547850	+	0	NA	intron (NM_001258351, intron 2 of 4)	intron (NM_001258351, intron 2 of 4)	3747	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
66598	chr14	63603751	63604050	+	0	NA	intron (NM_001382424, intron 2 of 3)	intron (NM_001382424, intron 2 of 3)	37971	NM_001382427	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
67454	chr14	70817451	70818330	+	0	NA	Intergenic	Intergenic	-8377	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
111541	chr19	4033821	4034130	+	0	NA	intron (NM_015897, intron 9 of 10)	intron (NM_015897, intron 9 of 10)	26239	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
45980	chr11	121472171	121473080	+	0	NA	TTS (NR_169501)	TTS (NR_169501)	9164	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
201040	chr6	142112401	142112650	+	0	NA	intron (NM_002511, intron 1 of 3)	intron (NM_002511, intron 1 of 3)	-20634	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
109913	chr19	1290651	1291430	+	0	NA	intron (NM_001405, intron 1 of 3)	MIR1_Amn|SINE|MIR	5167	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
29502	chr10	70600721	70601180	+	0	NA	intron (NM_001083116, intron 1 of 2)	intron (NM_001083116, intron 1 of 2)	1791	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
164401	chr3	58463421	58464250	+	0	NA	Intergenic	Intergenic	-28261	NM_001128214	200845		NM_153331	ENSG00000168301	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
120790	chr19	45447871	45448400	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluSx|SINE|Alu	2631	NM_001369417	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
136062	chr2	172806551	172806650	+	0	NA	intron (NR_164740, intron 3 of 30)	intron (NR_164740, intron 3 of 30)	-15225	NM_001100397	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
38402	chr11	44943201	44943780	+	0	NA	intron (NM_001258323, intron 1 of 7)	intron (NM_001258323, intron 1 of 7)	6670	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
71175	chr14	105045521	105046280	+	0	NA	Intergenic	CpG	19530	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
40258	chr11	63763071	63763630	+	0	NA	3' UTR (NM_001144936, exon 5 of 5)	3' UTR (NM_001144936, exon 5 of 5)	5425	NM_001144936	65998		NM_023941	ENSG00000188070	ZFTA	C11orf95	zinc finger translocation associated	protein-coding
27015	chr10	26839371	26840500	+	0	NA	intron (NM_001178116, intron 1 of 11)	AluJr|SINE|Alu	21023	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
8910	chr1	43974021	43977180	+	0	NA	intron (NM_001039457, intron 1 of 6)	intron (NM_001039457, intron 1 of 6)	640	NM_004047	533		NM_004047	ENSG00000117410	ATP6V0B	ATP6F|HATPL|VMA16	ATPase H+ transporting V0 subunit b	protein-coding
217346	chr8	27769871	27770030	+	0	NA	intron (NR_156432, intron 1 of 7)	AluSz|SINE|Alu	2690	NM_001304532	55246		NM_018246	ENSG00000147419	CCDC25	-	coiled-coil domain containing 25	protein-coding
116476	chr19	18103871	18105350	+	0	NA	intron (NM_015016, intron 1 of 26)	intron (NM_015016, intron 1 of 26)	-5794	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
4231	chr1	19480521	19481130	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	3470	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
51684	chr12	53096151	53096450	+	0	NA	Intergenic	Intergenic	-1367	NM_002178	3489		NM_002178	ENSG00000167779	IGFBP6	IBP6	insulin like growth factor binding protein 6	protein-coding
190722	chr6	297821	298080	+	0	NA	intron (NR_104475, intron 1 of 3)	intron (NR_104475, intron 1 of 3)	5893	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
10643	chr1	70224101	70224300	+	0	NA	intron (NM_001350615, intron 1 of 11)	MER2|DNA|TcMar-Tigger	2820	NM_001350613	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
34854	chr11	328251	328430	+	0	NA	Intergenic	Intergenic	-7480	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
86703	chr16	67541071	67541780	+	0	NA	intron (NM_024519, intron 10 of 21)	intron (NM_024519, intron 10 of 21)	3963	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
32078	chr10	101122451	101122630	+	0	NA	intron (NR_130724, intron 2 of 2)	intron (NR_130724, intron 2 of 2)	8606	NR_130723	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
6454	chr1	28255151	28255330	+	0	NA	Intergenic	AluSx|SINE|Alu	-4278	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
183472	chr5	79249921	79250580	+	0	NA	intron (NM_152405, intron 1 of 10)	intron (NM_152405, intron 1 of 10)	14119	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
25570	chr10	7756471	7756630	+	0	NA	intron (NM_012311, intron 12 of 12)	MLT1J1|LTR|ERVL-MaLR	31443	NR_045609	22944		NM_012311	ENSG00000151657	KIN	BTCD|KIN17|Rts2	Kin17 DNA and RNA binding protein	protein-coding
131220	chr2	95121021	95122680	+	0	NA	promoter-TSS (NM_001321995)	promoter-TSS (NM_001321995)	-42	NM_001321996	64969		NM_031902	ENSG00000144029	MRPS5	MRP-S5|S5mt|uS5m	mitochondrial ribosomal protein S5	protein-coding
76969	chr15	78173871	78174050	+	0	NA	intron (NM_001199377, intron 12 of 13)	intron (NM_001199377, intron 12 of 13)	24598	NM_005530	3419		NM_005530	ENSG00000166411	IDH3A	RP90	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein-coding
49381	chr12	22415401	22415600	+	0	NA	Intergenic	AluJo|SINE|Alu	-80786	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
178594	chr4	151766801	151767030	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-5892	NM_001363341	5188		NM_004564	ENSG00000059691	GATB	COXPD41|HSPC199|PET112|PET112L	glutamyl-tRNA amidotransferase subunit B	protein-coding
39450	chr11	60950721	60951800	+	0	NA	non-coding (NR_027391, exon 1 of 7)	non-coding (NR_027391, exon 1 of 7)	916	NM_016582	51296		NM_016582	ENSG00000110446	SLC15A3	OCTP|PHT2|PTR3|hPHT2	solute carrier family 15 member 3	protein-coding
114774	chr19	13751401	13751880	+	0	NA	5' UTR (NM_001320568, exon 2 of 9)	5' UTR (NM_001320568, exon 2 of 9)	3745	NM_001320569	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
215980	chr8	8847171	8847330	+	0	NA	intron (NM_004225, intron 1 of 2)	AluSq2|SINE|Alu	46380	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
52486	chr12	55997801	55998000	+	0	NA	intron (NM_001032386, intron 2 of 4)	intron (NM_001032386, intron 2 of 4)	624	NM_000456	6821		NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
70225	chr14	100644221	100644900	+	0	NA	Intergenic	Intergenic	-12708	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
43860	chr11	88304051	88304350	+	0	NA	intron (NM_001814, intron 4 of 6)	MIRb|SINE|MIR	33536	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
44610	chr11	108595671	108596030	+	0	NA	Intergenic	Intergenic	-2082	NM_001308019	23086		NM_015065	ENSG00000110723	EXPH5	EBS4|SLAC2-B|SLAC2B	exophilin 5	protein-coding
103642	chr17	78758771	78759930	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-22448	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
15638	chr1	150695101	150695680	+	0	NA	intron (NM_018178, intron 1 of 4)	AluSz|SINE|Alu	1764	NM_018178	55204		NM_018178	ENSG00000143457	GOLPH3L	GPP34R	golgi phosphoprotein 3 like	protein-coding
194430	chr6	33116301	33116500	+	0	NA	intron (NR_001435, intron 1 of 4)	intron (NR_001435, intron 1 of 4)	3884	NR_001435	3116		NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo
226319	chr9	69019751	69020530	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-6027	NM_002732	5568		NM_002732	ENSG00000165059	PRKACG	BDPLT19|KAPG|PKACg	protein kinase cAMP-activated catalytic subunit gamma	protein-coding
84772	chr16	30992251	30992850	+	0	NA	3' UTR (NM_052874, exon 10 of 10)	3' UTR (NM_052874, exon 10 of 10)	7343	NM_001142778	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
148857	chr21	8421451	8422200	+	0	NA	Intergenic	CpG	-10705	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
223377	chr8	143883751	143884480	+	0	NA	Intergenic	Intergenic	-5648	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238577	chrX	153832471	153833030	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-2206	NM_032512	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
125607	chr2	18378151	18378330	+	0	NA	Intergenic	Intergenic	182413	NM_020905	57665		NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14	protein-coding
30415	chr10	78976401	78976600	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	90948	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
108579	chr18	75072551	75072850	+	0	NA	Intergenic	Intergenic	132813	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
57470	chr12	122026901	122027500	+	0	NA	intron (NM_020993, intron 1 of 5)	intron (NM_020993, intron 1 of 5)	5316	NM_001024808	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
77281	chr15	82108451	82108950	+	0	NA	Intergenic	Intergenic	20106	NR_120367	101929690		NR_120367	ENSG00000259518	LINC01583	-	long intergenic non-protein coding RNA 1583	ncRNA
114673	chr19	13090071	13090230	+	0	NA	intron (NM_001271043, intron 9 of 10)	intron (NM_001271043, intron 9 of 10)	12708	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
43401	chr11	77145951	77146050	+	0	NA	intron (NM_001369365, intron 4 of 49)	intron (NM_001369365, intron 4 of 49)	17754	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
43895	chr11	88421371	88421930	+	0	NA	Intergenic	Intergenic	-82926	NR_049724	100873989		NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
1147	chr1	2187521	2188280	+	0	NA	intron (NM_001282671, intron 5 of 7)	L1MC1|LINE|L1	-1898	NR_168005	112268219		NR_168005		LOC112268219	-	uncharacterized LOC112268219	ncRNA
183565	chr5	80141551	80142050	+	0	NA	3' UTR (NM_001174072, exon 12 of 12)	3' UTR (NM_001174072, exon 12 of 12)	-58135	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
174975	chr4	49637151	49638280	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	651073	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
153839	chr22	30078551	30079250	+	0	NA	intron (NR_110541, intron 1 of 4)	intron (NR_110541, intron 1 of 4)	1357	NR_110541	101929664		NR_110541	ENSG00000227117	HORMAD2-AS1	MTMR3-AS1	HORMAD2 and MTMR3 antisense RNA 1	ncRNA
221891	chr8	128564521	128564980	+	0	NA	promoter-TSS (NR_121672)	promoter-TSS (NR_121672)	-71	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
62764	chr13	108219901	108220780	+	0	NA	intron (NM_032859, intron 1 of 1)	Tigger16a|DNA|TcMar-Tigger	1948	NM_032859	84945		NM_032859	ENSG00000139826	ABHD13	BEM46L1|C13orf6|bA153I24.2	abhydrolase domain containing 13	protein-coding
134621	chr2	144408371	144408930	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-75581	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
56080	chr12	110627351	110627850	+	0	NA	intron (NM_001082538, intron 3 of 14)	intron (NM_001082538, intron 3 of 14)	13471	NM_001082537	79600		NM_024549	ENSG00000204852	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
125957	chr2	25217471	25217630	+	0	NA	Intergenic	AluSq2|SINE|Alu	13237	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
209312	chr7	76050471	76051050	+	0	NA	intron (NM_001282404, intron 1 of 7)	L2a|LINE|L2	2654	NM_001282403	4191		NM_005918	ENSG00000146701	MDH2	DEE51|EIEE51|M-MDH|MDH|MGC:3559|MOR1	malate dehydrogenase 2	protein-coding
179567	chr4	185211751	185211850	+	0	NA	intron (NM_001378032, intron 1 of 19)	intron (NM_001378032, intron 1 of 19)	2243	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
148351	chr20	63834951	63835400	+	0	NA	Intergenic	Intergenic	-3911	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
199389	chr6	116281521	116282250	+	0	NA	intron (NM_001080976, intron 1 of 5)	intron (NM_001080976, intron 1 of 5)	1799	NR_136524	29940		NM_013352	ENSG00000111817	DSE	DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
8089	chr1	39039301	39040000	+	0	NA	Intergenic	AluSx|SINE|Alu	13300	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
223871	chr9	184451	185080	+	0	NA	Intergenic	Intergenic	-5690	NM_001145355	55871		NM_018491	ENSG00000172785	ZNG1A	CBWD1|COBP	Zn regulated GTPase metalloprotein activator 1A	protein-coding
84252	chr16	30010521	30012150	+	0	NA	promoter-TSS (NM_001282063)	promoter-TSS (NM_001282063)	86	NM_001282063	8448		NM_003586	ENSG00000149927	DOC2A	Doc2	double C2 domain alpha	protein-coding
195497	chr6	37173641	37174450	+	0	NA	exon (NM_002648, exon 6 of 6)	exon (NM_002648, exon 6 of 6)	3893	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
172308	chr4	1598421	1598680	+	0	NA	Intergenic	Intergenic	85441	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
161222	chr3	39183921	39184480	+	0	NA	exon (NM_001351377, exon 2 of 2)	exon (NM_001351377, exon 2 of 2)	8395	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
88787	chr16	87331571	87331930	+	0	NA	intron (NM_024735, intron 8 of 8)	intron (NM_024735, intron 8 of 8)	14241	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
89830	chr16	89580251	89580550	+	0	NA	intron (NM_014427, intron 3 of 16)	CpG	4642	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
200627	chr6	136791701	136793830	+	0	NA	promoter-TSS (NM_005923)	promoter-TSS (NM_005923)	-288	NM_005923	4217		NM_005923	ENSG00000197442	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
130629	chr2	86040871	86042200	+	0	NA	intron (NM_015425, intron 24 of 33)	MIR3|SINE|MIR	64351	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
16310	chr1	154180001	154180980	+	0	NA	intron (NM_001364680, intron 2 of 8)	intron (NM_001364680, intron 2 of 8)	-2286	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
40941	chr11	65312421	65312680	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2316	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
177480	chr4	113869901	113870130	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-108088	NM_172114	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
30632	chr10	80443601	80444000	+	0	NA	Intergenic	Intergenic	-10510	NM_001351267	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
75204	chr15	64832401	64832800	+	0	NA	Intergenic	AluYc|SINE|Alu	-6953	NM_001286497	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
63950	chr14	22100151	22100490	+	0	NA	Intergenic	Intergenic	332433	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
183	chr1	670551	670850	+	0	NA	Intergenic	Intergenic	15954	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
120338	chr19	43560621	43561080	+	0	NA	intron (NM_006297, intron 3 of 16)	intron (NM_006297, intron 3 of 16)	14677	NM_006297	7515		NM_006297	ENSG00000073050	XRCC1	RCC|SCAR26	X-ray repair cross complementing 1	protein-coding
169233	chr3	157139421	157140430	+	0	NA	Intergenic	L1MC4|LINE|L1	-16923	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
182051	chr5	55927801	55928000	+	0	NA	Intergenic	Intergenic	67063	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
221397	chr8	123479771	123480150	+	0	NA	Intergenic	LTR9B|LTR|ERV1	52183	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
217073	chr8	23589571	23589750	+	0	NA	Intergenic	Intergenic	60704	NM_001317812	51312		NM_016612	ENSG00000147454	SLC25A37	HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217	solute carrier family 25 member 37	protein-coding
168923	chr3	152350851	152351530	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-10200	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
192899	chr6	27553171	27553580	+	0	NA	Intergenic	Intergenic	-80257	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
237021	chrX	102650601	102651960	+	0	NA	promoter-TSS (NM_001099410)	promoter-TSS (NM_001099410)	-86	NM_001099411	9737		NM_014710	ENSG00000198932	GPRASP1	GASP|GASP-1|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding
158350	chr22	50458951	50459050	+	0	NA	intron (NM_002972, intron 28 of 40)	intron (NM_002972, intron 28 of 40)	16035	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
84434	chr16	30392671	30393030	+	0	NA	intron (NM_001214907, intron 1 of 1)	intron (NM_001214907, intron 1 of 1)	-2570	NM_001214909	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
110058	chr19	1485451	1485750	+	0	NA	intron (NM_017573, intron 8 of 14)	AluY|SINE|Alu	4850	NM_017573	54760		NM_017573	ENSG00000115257	PCSK4	PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding
48560	chr12	10243671	10244730	+	0	NA	intron (NM_001351060, intron 2 of 8)	intron (NM_001351060, intron 2 of 8)	5239	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
53627	chr12	68156771	68156930	+	0	NA	intron (NM_000619, intron 3 of 3)	intron (NM_000619, intron 3 of 3)	2890	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
173020	chr4	4462851	4463180	+	0	NA	intron (NM_016930, intron 2 of 10)	intron (NM_016930, intron 2 of 10)	-1043	NM_001346300	53407		NM_016930	ENSG00000168818	STX18	Ufe1	syntaxin 18	protein-coding
216424	chr8	19393271	19393700	+	0	NA	exon (NM_001363111, exon 8 of 9)	exon (NM_001363111, exon 8 of 9)	79509	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
181492	chr5	42989171	42989600	+	0	NA	intron (NR_104643, intron 1 of 1)	intron (NR_104643, intron 1 of 1)	3948	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
57609	chr12	122471371	122472800	+	0	NA	3' UTR (NM_001350935, exon 11 of 11)	3' UTR (NM_001350935, exon 11 of 11)	28847	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
39111	chr11	48056971	48057130	+	0	NA	intron (NM_002843, intron 1 of 24)	MIR|SINE|MIR	-39732	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
179710	chr4	190203121	190204500	+	0	NA	Intergenic	TAR1|Satellite|telo	30036	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
41076	chr11	65509201	65510060	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2198	NR_145459	109136579		NR_145459	ENSG00000289740	TALAM1	-	TALAM1 transcript, MALAT1 antisense RNA	ncRNA
40778	chr11	64878001	64879720	+	0	NA	promoter-TSS (NM_006795)	promoter-TSS (NM_006795)	-239	NM_006795	10938		NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH domain containing 1	protein-coding
176513	chr4	94610201	94610400	+	0	NA	exon (NM_001256426, exon 10 of 17)	exon (NM_001256426, exon 10 of 17)	147233	NR_121610	100507012		NR_121610	ENSG00000249599	BMPR1B-DT	BMPR1B-AS1	BMPR1B divergent transcript	ncRNA
33265	chr10	114515451	114515950	+	0	NA	intron (NM_001322883, intron 6 of 20)	MLT1C|LTR|ERVL-MaLR	11213	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
44041	chr11	95154421	95154930	+	0	NA	intron (NR_110303, intron 1 of 2)	intron (NR_110303, intron 1 of 2)	4136	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
162405	chr3	48238451	48238750	+	0	NA	Intergenic	LTR8|LTR|ERV1	-2504	NM_016089	51385		NM_016089	ENSG00000164048	ZNF589	SZF1	zinc finger protein 589	protein-coding
233481	chr9	137809471	137809630	+	0	NA	intron (NM_024757, intron 18 of 26)	CpG	-21144	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
214726	chr7	151024771	151025200	+	0	NA	promoter-TSS (NM_001317056)	promoter-TSS (NM_001317056)	-486	NR_073169	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
48595	chr12	10316051	10316550	+	0	NA	non-coding (NR_147040, exon 5 of 5)	non-coding (NR_147040, exon 5 of 5)	8430	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
3218	chr1	13766921	13767950	+	0	NA	intron (NM_001135610, intron 6 of 7)	AluJo|SINE|Alu	18020	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
143982	chr20	32902451	32902930	+	0	NA	intron (NM_001143967, intron 11 of 26)	intron (NM_001143967, intron 11 of 26)	43767	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
195511	chr6	37192721	37192980	+	0	NA	Intergenic	Intergenic	22698	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
111325	chr19	3628421	3629300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2045	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
41283	chr11	65855821	65856150	+	0	NA	exon (NM_005507, exon 2 of 4)	exon (NM_005507, exon 2 of 4)	2195	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
39818	chr11	62028071	62028430	+	0	NA	Intergenic	AluSx|SINE|Alu	-60616	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
125365	chr2	11126171	11126730	+	0	NA	intron (NR_040080, intron 3 of 8)	AluJo|SINE|Alu	5726	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
128122	chr2	48320821	48321400	+	0	NA	intron (NM_001375452, intron 1 of 5)	L2c|LINE|L2	6428	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
102121	chr17	75036061	75037980	+	0	NA	intron (NR_110835, intron 3 of 7)	intron (NR_110835, intron 3 of 7)	4449	NR_110835	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
143213	chr20	24963501	24963700	+	0	NA	3' UTR (NM_020531, exon 9 of 9)	3' UTR (NM_020531, exon 9 of 9)	14331	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
196364	chr6	43234271	43234430	+	0	NA	Intergenic	AluY|SINE|Alu	-4869	NM_006443	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
195836	chr6	41371151	41373100	+	0	NA	Intergenic	CpG	36517	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
33290	chr10	114633121	114633580	+	0	NA	promoter-TSS (NM_001352440)	promoter-TSS (NM_001352440)	-953	NM_001352440	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
138453	chr2	206172451	206172750	+	0	NA	Intergenic	(GGAGAG)n|Simple_repeat|Simple_repeat	10372	NR_002590	619569		NR_002590	ENSG00000207406	SNORA41	ACA41|SNORA41A	small nucleolar RNA, H/ACA box 41	snoRNA
135915	chr2	171522201	171523330	+	0	NA	intron (NM_001127383, intron 1 of 2)	CpG	291	NM_024843	79901		NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
20268	chr1	194057171	194057330	+	0	NA	Intergenic	LTR78|LTR|ERV1	752505	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
201454	chr6	148559771	148560280	+	0	NA	Intergenic	CpG	50874	NM_001346509	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
43529	chr11	82733501	82734030	+	0	NA	promoter-TSS (NM_175885)	promoter-TSS (NM_175885)	99	NM_175885	220382		NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
55343	chr12	103964551	103964650	+	0	NA	Intergenic	Intergenic	-1204	NM_001363612	6996		NM_003211	ENSG00000139372	TDG	hTDG	thymine DNA glycosylase	protein-coding
160409	chr3	28246251	28246600	+	0	NA	intron (NM_001331187, intron 1 of 3)	L2|LINE|L2	4806	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
128297	chr2	54618921	54619180	+	0	NA	intron (NM_178313, intron 6 of 30)	intron (NM_178313, intron 6 of 30)	60656	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
52260	chr12	54432451	54433350	+	0	NA	intron (NR_120487, intron 3 of 3)	intron (NR_120487, intron 3 of 3)	13115	NR_120488	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
2463	chr1	9649151	9649250	+	0	NA	Intergenic	Intergenic	-2531	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
53974	chr12	74540151	74540780	+	0	NA	3' UTR (NM_001136262, exon 1 of 1)	3' UTR (NM_001136262, exon 1 of 1)	2630	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
47507	chr12	4106451	4106900	+	0	NA	Intergenic	Intergenic	-167087	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
77806	chr15	88476571	88476950	+	0	NA	intron (NM_176805, intron 3 of 4)	intron (NM_176805, intron 3 of 4)	9052	NM_001321974	64963		NM_022839	ENSG00000181991	MRPS11	HCC-2|MRP-S11|S11mt|uS11m	mitochondrial ribosomal protein S11	protein-coding
198190	chr6	96838521	96839230	+	0	NA	Intergenic	Intergenic	-1398	NM_030784	81491		NM_030784	ENSG00000112218	GPR63	PSP24(beta)|PSP24B	G protein-coupled receptor 63	protein-coding
124469	chr19	58540171	58540600	+	0	NA	intron (NM_001316980, intron 1 of 2)	intron (NM_001316980, intron 1 of 2)	1327	NM_001316980	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
86226	chr16	58115301	58115700	+	0	NA	intron (NR_136632, intron 3 of 5)	intron (NR_136632, intron 3 of 5)	13881	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
36541	chr11	6602801	6604000	+	0	NA	promoter-TSS (NM_001014794)	promoter-TSS (NM_001014794)	216	NM_015324	23378		NM_015324	ENSG00000132275	RRP8	KIAA0409|NML	ribosomal RNA processing 8	protein-coding
108546	chr18	74500601	74500830	+	0	NA	intron (NM_001370254, intron 2 of 11)	LTR2B|LTR|ERV1	1127	NM_001168499	55748		NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	carnosine dipeptidase 2	protein-coding
87423	chr16	70684271	70684630	+	0	NA	intron (NM_138383, intron 1 of 14)	intron (NM_138383, intron 1 of 14)	1603	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
127416	chr2	42114351	42115000	+	0	NA	Intergenic	Intergenic	-54678	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
57063	chr12	120944521	120945180	+	0	NA	Intergenic	Intergenic	27442	NR_024345	283460		NR_024345	ENSG00000241388	HNF1A-AS1	C12orf27|HAS1|HASTER|NCRNA00262	HNF1A antisense RNA 1	ncRNA
106355	chr18	13217101	13217960	+	0	NA	promoter-TSS (NM_001378101)	promoter-TSS (NM_001378101)	-152	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
230644	chr9	128687271	128687430	+	0	NA	intron (NM_001248000, intron 1 of 7)	AluSx|SINE|Alu	-1872	NM_003011	6418		NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|MRD58|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
87375	chr16	70433351	70433650	+	0	NA	intron (NM_006927, intron 1 of 6)	Tigger19b|DNA|TcMar-Tigger	5600	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
52295	chr12	54604771	54605130	+	0	NA	Intergenic	AluSc|SINE|Alu	5512	NR_003039	644076		NR_003039	ENSG00000293392	GLYCAM1	-	glycosylation dependent cell adhesion molecule 1 (pseudogene)	pseudo
141562	chr2	241517001	241517200	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7528	NM_001282305	10494		NM_006374	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
12567	chr1	108706521	108706980	+	0	NA	Intergenic	AluJb|SINE|Alu	-6158	NM_001144937	163479		NM_173532	ENSG00000143107	FNDC7	-	fibronectin type III domain containing 7	protein-coding
166060	chr3	108826421	108827030	+	0	NA	intron (NM_001317747, intron 1 of 4)	intron (NM_001317747, intron 1 of 4)	3939	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
23850	chr1	234726951	234727750	+	0	NA	intron (NR_038856, intron 2 of 2)	intron (NR_038856, intron 2 of 2)	3308	NR_038856	100506810		NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
22330	chr1	214279671	214279980	+	0	NA	Intergenic	AluJr|SINE|Alu	-1334	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
218225	chr8	42036571	42037030	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-14950	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
219935	chr8	86523271	86523650	+	0	NA	intron (NM_003909, intron 2 of 16)	intron (NM_003909, intron 2 of 16)	9025	NM_003909	8895		NM_003909	ENSG00000085719	CPNE3	CPN3|PRO1071	copine 3	protein-coding
147444	chr20	58914521	58914780	+	0	NA	Intergenic	AluSx1|SINE|Alu	22487	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
132625	chr2	108620271	108620430	+	0	NA	promoter-TSS (NM_001193484)	promoter-TSS (NM_001193484)	-901	NM_001193484	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
50338	chr12	47083221	47083830	+	0	NA	intron (NM_138371, intron 1 of 3)	intron (NM_138371, intron 1 of 3)	-3566	NM_001370299	347902		NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
172971	chr4	3952771	3952930	+	0	NA	intron (NR_130742, intron 2 of 3)	intron (NR_130742, intron 2 of 3)	2578	NR_130742	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
692	chr1	1395521	1395780	+	0	NA	intron (NM_001350497, intron 1 of 9)	intron (NM_001350497, intron 1 of 9)	2692	NM_001350497	81669		NM_030937	ENSG00000221978	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
199083	chr6	111660721	111660980	+	0	NA	3' UTR (NM_153048, exon 11 of 11)	3' UTR (NM_153048, exon 11 of 11)	-54576	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
32103	chr10	101190051	101190350	+	0	NA	intron (NR_120620, intron 3 of 5)	intron (NR_120620, intron 3 of 5)	13878	NR_120620	101927396		NR_120620	ENSG00000237579	LINC01514	-	long intergenic non-protein coding RNA 1514	ncRNA
203118	chr6	166625071	166625630	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	1901	NM_021135	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
72038	chr15	28663851	28663950	+	0	NA	intron (NR_036443, intron 6 of 13)	intron (NR_036443, intron 6 of 13)	9458	NR_036443	440248		NM_199045	ENSG00000291082	HERC2P9	-	HERC2 pseudogene 9	pseudo
190895	chr6	2769951	2770680	+	0	NA	promoter-TSS (NM_001347872)	promoter-TSS (NM_001347872)	61	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
129786	chr2	71274771	71275330	+	0	NA	Intergenic	L1PA8|LINE|L1	-47947	NM_020459	400961		NM_020459	ENSG00000124374	PAIP2B	-	poly(A) binding protein interacting protein 2B	protein-coding
148678	chr21	6144801	6145400	+	0	NA	Intergenic	CpG	33969	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
141475	chr2	241080651	241080750	+	0	NA	intron (NR_138463, intron 6 of 6)	L1MC5a|LINE|L1	21587	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
136178	chr2	174489301	174490730	+	0	NA	Intergenic	Intergenic	-2927	NM_001267051	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
230743	chr9	128880001	128880200	+	0	NA	intron (NM_001352995, intron 1 of 14)	intron (NM_001352995, intron 1 of 14)	1850	NM_004059	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
144156	chr20	34055251	34055550	+	0	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	6281	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
161197	chr3	39145951	39146250	+	0	NA	intron (NM_001320559, intron 2 of 4)	intron (NM_001320559, intron 2 of 4)	1330	NM_001320559	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
13271	chr1	112770251	112770750	+	0	NA	Intergenic	MIRc|SINE|MIR	51595	NR_169586	284467		NM_182759	ENSG00000184599	TAFA3	FAM19A3|TAFA-3	TAFA chemokine like family member 3	protein-coding
4120	chr1	19321871	19323000	+	0	NA	intron (NR_109848, intron 3 of 9)	intron (NR_109848, intron 3 of 9)	10109	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
217379	chr8	28090401	28090600	+	0	NA	intron (NM_001284222, intron 1 of 14)	(GT)n|Simple_repeat|Simple_repeat	268	NM_001284222	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
116449	chr19	18056501	18056980	+	0	NA	Intergenic	Intergenic	30194	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
37749	chr11	31819651	31820400	+	0	NA	intron (NR_033971, intron 1 of 2)	CpG	-2064	NM_001368919	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
107241	chr18	37407271	37407450	+	0	NA	intron (NR_148519, intron 2 of 12)	intron (NR_148519, intron 2 of 12)	59144	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
228094	chr9	96423671	96423830	+	0	NA	Intergenic	Intergenic	-5380	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
31135	chr10	89609971	89610130	+	0	NA	intron (NM_148977, intron 2 of 6)	MIR3|SINE|MIR	-17223	NR_029524	406901		NR_029524	ENSG00000198997	MIR107	MIRN107|miR-107	microRNA 107	ncRNA
93492	chr17	18962121	18962380	+	0	NA	intron (NM_152351, intron 5 of 14)	L2c|LINE|L2	10085	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
219006	chr8	63186621	63187280	+	0	NA	exon (NM_001277818, exon 4 of 5)	exon (NM_001277818, exon 4 of 5)	17947	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
4215	chr1	19461001	19461580	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	23005	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
144203	chr20	34311071	34311880	+	0	NA	5' UTR (NM_001161766, exon 1 of 10)	5' UTR (NM_001161766, exon 1 of 10)	327	NM_001161766	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
152928	chr22	22792801	22793200	+	0	NA	Intergenic	Intergenic	-29776	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
218467	chr8	48949401	48950000	+	0	NA	Intergenic	Intergenic	-28271	NM_003068	6591		NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding
31253	chr10	91976021	91976280	+	0	NA	intron (NR_165098, intron 15 of 38)	MER21C|LTR|ERVL	52380	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
15282	chr1	149781571	149781800	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-1009	NR_166122	2209		NM_000566	ENSG00000150337	FCGR1A	CD64|CD64A|FCG1|FCGR1|FCRI|FcgammaRI|IGFR1	Fc gamma receptor Ia	protein-coding
239164	chrY	11747571	11747750	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	673930	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
178620	chr4	152103501	152104080	+	0	NA	non-coding (NR_121628, exon 3 of 3)	non-coding (NR_121628, exon 3 of 3)	2972	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
191942	chr6	15936501	15936700	+	0	NA	Intergenic	Intergenic	-192486	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
99772	chr17	51114401	51115200	+	0	NA	intron (NM_001130527, intron 1 of 29)	AluSz|SINE|Alu	6068	NM_001130527	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
142507	chr20	4810271	4810430	+	0	NA	intron (NM_014737, intron 2 of 11)	intron (NM_014737, intron 2 of 11)	4773	NM_170774	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
198243	chr6	99395121	99395780	+	0	NA	Intergenic	Intergenic	-1255	NM_017421	51805		NM_017421	ENSG00000132423	COQ3	DHHBMT|DHHBMTASE|UG0215E05|bA9819.1	coenzyme Q3, methyltransferase	protein-coding
66516	chr14	61727121	61727550	+	0	NA	intron (NM_181054, intron 5 of 13)	intron (NM_181054, intron 5 of 13)	21754	NR_045406	100750247		NR_045406		HIF1A-AS2	3'aHIF-1A|aHIF	HIF1A antisense RNA 2	ncRNA
12428	chr1	101997051	101997150	+	0	NA	promoter-TSS (NM_058170)	promoter-TSS (NM_058170)	134	NR_110210	118427		NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|OPTIMEDIN	olfactomedin 3	protein-coding
214299	chr7	149129471	149129630	+	0	NA	intron (NM_020781, intron 2 of 6)	AluSx|SINE|Alu	3142	NM_020781	57541		NM_020781	ENSG00000197024	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding
105335	chr17	82603201	82603550	+	0	NA	3' UTR (NM_004514, exon 9 of 9)	3' UTR (NM_004514, exon 9 of 9)	45069	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
169914	chr3	177683301	177684230	+	0	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-133100	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
55794	chr12	108637521	108637780	+	0	NA	Intergenic	Intergenic	1840	NR_039717	100616240		NR_039717	ENSG00000284388	MIR4496	-	microRNA 4496	ncRNA
149368	chr21	29361401	29361600	+	0	NA	intron (NR_027655, intron 7 of 7)	intron (NR_027655, intron 7 of 7)	-11001	NR_046564	100874322		NR_046564		BACH1-IT2	-	BACH1 intronic transcript 2	ncRNA
198327	chr6	101730751	101731050	+	0	NA	intron (NM_021956, intron 7 of 16)	Charlie30a|DNA|hAT-Charlie	331915	NM_001166247	2898		NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6|NEDLAS	glutamate ionotropic receptor kainate type subunit 2	protein-coding
151704	chr22	17368301	17368800	+	0	NA	promoter-TSS (NM_001290047)	promoter-TSS (NM_001290047)	-910	NM_001290047	27443		NM_031413	ENSG00000099954	CECR2	-	CECR2 histone acetyl-lysine reader	protein-coding
61822	chr13	75761271	75761750	+	0	NA	intron (NM_001330583, intron 2 of 28)	intron (NM_001330583, intron 2 of 28)	849	NM_015842	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
185947	chr5	132960771	132961630	+	0	NA	intron (NM_014423, intron 1 of 20)	AluSc8|SINE|Alu	2434	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
151953	chr22	19125151	19125580	+	0	NA	Intergenic	Intergenic	-2911	NM_001173533	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
76662	chr15	75686051	75686630	+	0	NA	intron (NM_001897, intron 3 of 9)	intron (NM_001897, intron 3 of 9)	26508	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
136566	chr2	177626101	177626500	+	0	NA	3' UTR (NM_001077197, exon 21 of 21)	3' UTR (NM_001077197, exon 21 of 21)	-7558	NM_152275	92104		NM_152275	ENSG00000197557	IFT70A	CFAP259|FAP259|TTC30A|TTC30B	intraflagellar transport 70A	protein-coding
115698	chr19	16203851	16205000	+	0	NA	intron (NM_001130524, intron 2 of 12)	intron (NM_001130524, intron 2 of 12)	6514	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
68765	chr14	91066721	91068300	+	0	NA	intron (NM_001358312, intron 1 of 13)	intron (NM_001358312, intron 1 of 13)	-6861	NM_182398	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
9410	chr1	47508851	47508950	+	0	NA	Intergenic	Intergenic	70856	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
155618	chr22	38864501	38865230	+	0	NA	3' UTR (NM_001303494, exon 5 of 5)	3' UTR (NM_001303494, exon 5 of 5)	7351	NM_001303494	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
26758	chr10	22711201	22711730	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	2643	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
23496	chr1	228650251	228650350	+	0	NA	non-coding (NR_002834, exon 2 of 2)	non-coding (NR_002834, exon 2 of 2)	-4142	NR_023374	100169763		NR_023374	ENSG00000199270	RNA5S12	RN5S12	RNA, 5S ribosomal 12	rRNA
61993	chr13	80385951	80386350	+	0	NA	Intergenic	Intergenic	-45024	NM_005842	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
234868	chrX	25144171	25144400	+	0	NA	Intergenic	Intergenic	-128320	NM_139058	170302		NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
29776	chr10	72268171	72268730	+	0	NA	Intergenic	AluSc|SINE|Alu	-5474	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
161320	chr3	39412721	39413080	+	0	NA	TTS (NM_001304288)	TTS (NM_001304288)	1846	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
3102	chr1	12207171	12207330	+	0	NA	3' UTR (NM_001066, exon 10 of 10)	3' UTR (NM_001066, exon 10 of 10)	15537	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
51458	chr12	52054351	52055100	+	0	NA	exon (NM_001202234, exon 3 of 8)	exon (NM_001202234, exon 3 of 8)	3283	NM_173157	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
151603	chr22	11703071	11703400	+	0	NA	Intergenic	Intergenic	-194171	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
181165	chr5	39052201	39052400	+	0	NA	intron (NM_001285439, intron 2 of 38)	AluJr4|SINE|Alu	22099	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
68790	chr14	91225721	91226050	+	0	NA	TTS (NM_001286472)	TTS (NM_001286472)	18819	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
92477	chr17	8745801	8746700	+	0	NA	Intergenic	Intergenic	-1414	NM_001158261	146849		NM_144681	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
155485	chr22	38502901	38503400	+	0	NA	intron (NM_006386, intron 1 of 12)	intron (NM_006386, intron 1 of 12)	3161	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
143934	chr20	32744901	32745330	+	0	NA	Intergenic	Intergenic	-1648	NM_053041	149951		NM_053041	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
16411	chr1	154467201	154468580	+	0	NA	3' UTR (NM_001382774, exon 9 of 9)	3' UTR (NM_001382774, exon 9 of 9)	-34329	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
154083	chr22	30920221	30920750	+	0	NA	intron (NR_146603, intron 1 of 2)	intron (NR_146603, intron 1 of 2)	1294	NR_146603	107985544		NR_146603		LOC107985544	-	uncharacterized LOC107985544	ncRNA
236189	chrX	65666901	65668020	+	0	NA	promoter-TSS (NM_002444)	promoter-TSS (NM_002444)	-194	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
106187	chr18	10560151	10560730	+	0	NA	Intergenic	Intergenic	34413	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
100368	chr17	60079951	60080050	+	0	NA	intron (NR_135648, intron 1 of 1)	LTR104_Mam|LTR|Gypsy	691	NR_135648	105371849		NR_135648	ENSG00000267416	HEATR6-DT	-	HEATR6 divergent transcript	ncRNA
117388	chr19	19596971	19598400	+	0	NA	intron (NM_025245, intron 2 of 7)	L1MC4a|LINE|L1	21002	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
150506	chr21	42836821	42837450	+	0	NA	Intergenic	Intergenic	42140	NM_001260477	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
47120	chr12	682331	683280	+	0	NA	Intergenic	Intergenic	-19360	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
112400	chr19	6125471	6125930	+	0	NA	Intergenic	Charlie17b|DNA|hAT-Charlie	-9933	NM_001289180	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
167824	chr3	133596351	133596650	+	0	NA	Intergenic	AluSg|SINE|Alu	22066	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
158252	chr22	50307131	50308630	+	0	NA	promoter-TSS (NM_001376866)	promoter-TSS (NM_001376866)	-234	NM_001376869	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
49266	chr12	19483751	19484230	+	0	NA	intron (NM_153207, intron 3 of 7)	L1MC4a|LINE|L1	43391	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
234896	chrX	30887821	30888100	+	0	NA	intron (NM_152787, intron 1 of 10)	intron (NM_152787, intron 1 of 10)	1294	NM_152787	257397		NM_152787	ENSG00000157625	TAB3	MAP3K7IP3|NAP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 3	protein-coding
215160	chr7	155570851	155570950	+	0	NA	promoter-TSS (NM_001369813)	promoter-TSS (NM_001369813)	-154	NM_001369813	285888		NM_001103176	ENSG00000146910	CNPY1	-	canopy FGF signaling regulator 1	protein-coding
121626	chr19	47437651	47437950	+	0	NA	intron (NM_015063, intron 7 of 9)	intron (NM_015063, intron 7 of 9)	-15567	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
115666	chr19	16142151	16142650	+	0	NA	intron (NR_163150, intron 2 of 7)	intron (NR_163150, intron 2 of 7)	-1285	NM_001369809	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
150887	chr21	44137251	44137350	+	0	NA	intron (NM_198155, intron 4 of 5).2	intron (NM_198155, intron 4 of 5).2	3617	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
221120	chr8	118107501	118108100	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	4026	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
136598	chr2	178450121	178452430	+	0	NA	promoter-TSS (NM_001042702)	promoter-TSS (NM_001042702)	-100	NM_001316362	8575		NM_003690	ENSG00000180228	PRKRA	DYT16|HSD14|PACT|RAX	protein activator of interferon induced protein kinase EIF2AK2	protein-coding
213991	chr7	142853801	142854400	+	0	NA	promoter-TSS (NM_001280794)	promoter-TSS (NM_001280794)	-914	NM_001280794	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
204108	chr7	2214621	2215300	+	0	NA	intron (NM_001304524, intron 7 of 16)	FLAM_C|SINE|Alu	17985	NM_003550	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
161577	chr3	42906071	42907080	+	0	NA	intron (NM_001134656, intron 1 of 3)	CpG	433	NM_001134656	389114		NM_207404	ENSG00000182983	ZNF662	-	zinc finger protein 662	protein-coding
180706	chr5	22853051	22853350	+	0	NA	5' UTR (NM_001364106, exon 1 of 15)	5' UTR (NM_001364106, exon 1 of 15)	144	NM_001364104	1010		NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
67688	chr14	73232351	73233450	+	0	NA	Intergenic	Intergenic	-4606	NR_158678	89932		NM_173462	ENSG00000100767	PAPLN	PPN	papilin, proteoglycan like sulfated glycoprotein	protein-coding
78930	chr15	101249101	101249500	+	0	NA	intron (NM_014918, intron 1 of 2)	intron (NM_014918, intron 1 of 2)	2748	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
120523	chr19	44851501	44851900	+	0	NA	intron (NM_002856, intron 1 of 5)	intron (NM_002856, intron 1 of 5)	5403	NM_002856	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
239505	chrY	56765111	56766100	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-188650	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
21922	chr1	207840401	207840600	+	0	NA	Intergenic	Intergenic	-17797	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
21893	chr1	207809071	207809850	+	0	NA	intron (NR_135299, intron 4 of 5)	intron (NR_135299, intron 4 of 5)	-6937	NR_029518	407025		NR_029518	ENSG00000284203	MIR29B2	MIRN29B2	microRNA 29b-2	ncRNA
72705	chr15	38638751	38639050	+	0	NA	Intergenic	Intergenic	-57698	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
94728	chr17	30732921	30733230	+	0	NA	intron (NR_144394, intron 1 of 8)	intron (NR_144394, intron 1 of 8)	23467	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
218838	chr8	59462221	59462680	+	0	NA	Intergenic	L1PA4|LINE|L1	343240	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
96445	chr17	40200851	40201150	+	0	NA	Intergenic	AluY|SINE|Alu	7403	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
223694	chr8	144425371	144426500	+	0	NA	intron (NM_016208, intron 4 of 9)	intron (NM_016208, intron 4 of 9)	2613	NM_016208	51160		NM_016208	ENSG00000160948	VPS28	CIIA	VPS28 subunit of ESCRT-I	protein-coding
154389	chr22	35274751	35274850	+	0	NA	intron (NM_001362972, intron 4 of 9)	Tigger15a|DNA|TcMar-Tigger	17307	NM_001003681	10042		NM_005487	ENSG00000100281	HMGXB4	HMG2L1|HMGBCG|P53N|THC211630	HMG-box containing 4	protein-coding
124045	chr19	55526421	55526680	+	0	NA	Intergenic	Intergenic	10583	NM_001370096	646643		NM_001101401	ENSG00000187550	SBK2	SGK069	SH3 domain binding kinase family member 2	protein-coding
208976	chr7	74204151	74204330	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-5766	NM_032464	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
22431	chr1	220220551	220220850	+	0	NA	intron (NM_012414, intron 2 of 34)	THE1B|LTR|ERVL-MaLR	-20024	NR_002994	677818		NR_002994	ENSG00000222370	SNORA36B	ACA36b	small nucleolar RNA, H/ACA box 36B	snoRNA
125443	chr2	12036171	12037180	+	0	NA	intron (NR_110196, intron 2 of 5)	intron (NR_110196, intron 2 of 5)	29559	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
5863	chr1	26739221	26740280	+	0	NA	intron (NM_139135, intron 4 of 19)	intron (NM_139135, intron 4 of 19)	43735	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
71733	chr15	20507171	20507330	+	0	NA	Intergenic	AluSz|SINE|Alu	-1070	NR_036432	283755		NM_001024682	ENSG00000290376	HERC2P3	D15F37S4	HERC2 pseudogene 3	pseudo
70979	chr14	104707671	104707830	+	0	NA	exon (NM_001031714, exon 8 of 22)	exon (NM_001031714, exon 8 of 22)	-16479	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
30106	chr10	73978671	73978830	+	0	NA	Intergenic	AluY|SINE|Alu	-19366	NM_014000	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
143078	chr20	21555021	21555280	+	0	NA	Intergenic	Intergenic	-14874	NR_109880	101929625		NR_109880		LINC01727	IRENA	long intergenic non-protein coding RNA 1727	ncRNA
100396	chr17	60314851	60315150	+	0	NA	intron (NM_032582, intron 2 of 33)	intron (NM_032582, intron 2 of 33)	77133	NM_032582	84669		NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding
94183	chr17	28549351	28550280	+	0	NA	intron (NM_054035, intron 1 of 3)	intron (NM_054035, intron 1 of 3)	2809	NM_001330166	9094		NM_005148	ENSG00000109103	UNC119	CORD24|HRG4|IMD13|POC7|POC7A	unc-119 lipid binding chaperone	protein-coding
95700	chr17	38474621	38474930	+	0	NA	intron (NM_001199417, intron 11 of 23).2	L2|LINE|L2	46311	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
209804	chr7	87878321	87878580	+	0	NA	intron (NM_001318060, intron 2 of 10)	intron (NM_001318060, intron 2 of 10)	1957	NM_006716	10926		NM_006716	ENSG00000006634	DBF4	ASK|CHIF|DBF4A|ZDBF1	DBF4-CDC7 kinase regulatory subunit	protein-coding
73640	chr15	44676521	44676980	+	0	NA	intron (NM_001330283, intron 1 of 14)	intron (NM_001330283, intron 1 of 14)	138	NM_001330283	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
77366	chr15	82814221	82814680	+	0	NA	intron (NM_001080435, intron 2 of 9)	AluSp|SINE|Alu	4822	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
181504	chr5	43016201	43016500	+	0	NA	non-coding (NR_034085, exon 1 of 1)	non-coding (NR_034085, exon 1 of 1)	2461	NR_034086	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
163742	chr3	52352951	52353050	+	0	NA	intron (NM_015512, intron 18 of 77)	intron (NM_015512, intron 18 of 77)	36681	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
142886	chr20	17904051	17904350	+	0	NA	Intergenic	L1ME2|LINE|L1	58746	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
69146	chr14	92555151	92556280	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	-20519	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
48693	chr12	10597171	10597530	+	0	NA	intron (NR_028045, intron 2 of 6)	intron (NR_028045, intron 2 of 6)	2485	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
14777	chr1	146050571	146050730	+	0	NA	Intergenic	MLT2F|LTR|ERVL	1594	NR_104085	101954276		NR_104085	ENSG00000201558	RNVU1-6	RNU1-99|vU1.6	RNA, variant U1 small nuclear 6	snRNA
5394	chr1	25477051	25477150	+	0	NA	intron (NM_018202, intron 6 of 10)	intron (NM_018202, intron 6 of 10)	46203	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
116065	chr19	17229371	17230030	+	0	NA	TTS (NM_024578)	TTS (NM_024578)	3474	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
91926	chr17	7324021	7324650	+	0	NA	intron (NM_032442, intron 10 of 28)	CpG	5000	NM_032442	84461		NM_032442	ENSG00000215041	NEURL4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding
191024	chr6	3122221	3122480	+	0	NA	intron (NR_026648, intron 2 of 8)	intron (NR_026648, intron 2 of 8)	3639	NM_004332	670		NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase like	protein-coding
217218	chr8	26448121	26448700	+	0	NA	Intergenic	CpG	57997	NM_001330491	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
84506	chr16	30505871	30506230	+	0	NA	intron (NM_002209, intron 20 of 30)	AluSx|SINE|Alu	2131	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
74079	chr15	52675451	52675750	+	0	NA	intron (NR_169533, intron 3 of 3)	intron (NR_169533, intron 3 of 3)	3157	NR_169545	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
223793	chr8	144753771	144754000	+	0	NA	intron (NM_138367, intron 3 of 4)	intron (NM_138367, intron 3 of 4)	1646	NM_138367	90987		NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
104439	chr17	81085021	81085280	+	0	NA	intron (NM_001385144, intron 4 of 13)	intron (NM_001385144, intron 4 of 13)	1611	NM_001385156	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
75046	chr15	64157271	64157430	+	0	NA	non-coding (NR_073534, exon 7 of 7)	non-coding (NR_073534, exon 7 of 7)	5619	NM_024798	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
234437	chrX	16866951	16867600	+	0	NA	intron (NM_002893, intron 2 of 11)	MIRb|SINE|MIR	2588	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
113141	chr19	8331771	8331930	+	0	NA	intron (NM_198471, intron 7 of 10)	intron (NM_198471, intron 7 of 10)	10354	NM_001031	6234		NM_001031	ENSG00000233927	RPS28	DBA15|S28|eS28	ribosomal protein S28	protein-coding
196856	chr6	47656351	47656450	+	0	NA	promoter-TSS (NM_001368115)	promoter-TSS (NM_001368115)	-72	NM_153839	222611		NM_153839		ADGRF2	GPR111|PGR20|hGPCR35	adhesion G protein-coupled receptor F2	ncRNA
149396	chr21	31159001	31159980	+	0	NA	intron (NM_001353694, intron 16 of 27)	intron (NM_001353694, intron 16 of 27)	1450	NM_001353684	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
198570	chr6	107113301	107113500	+	0	NA	intron (NM_001080450, intron 1 of 4)	AluSx|SINE|Alu	1032	NM_001080450	57673		NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
163411	chr3	50547621	50548280	+	0	NA	Intergenic	Intergenic	19797	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
118208	chr19	35148521	35148980	+	0	NA	intron (NM_022006, intron 2 of 5)	intron (NM_022006, intron 2 of 5)	5495	NM_022006	53822		NM_022006	ENSG00000221946	FXYD7	-	FXYD domain containing ion transport regulator 7	protein-coding
209037	chr7	74625071	74625880	+	0	NA	Intergenic	Intergenic	29507	NR_162116	113218504		NR_162116		MIR10525	-	microRNA 10525	ncRNA
58294	chr12	130776001	130776780	+	0	NA	Intergenic	Intergenic	-60085	NM_001351233	23504		NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
139039	chr2	218571771	218571930	+	0	NA	intron (NR_073390, intron 1 of 6)	AluSp|SINE|Alu	3011	NR_073390	9125		NM_005444	ENSG00000144580	CNOT9	CAF40|CT129|RCD-1|RCD1|RQCD1	CCR4-NOT transcription complex subunit 9	protein-coding
221773	chr8	127920201	127920430	+	0	NA	intron (NR_003367, intron 2 of 8)	Tigger13a|DNA|TcMar-Tigger	28408	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
115283	chr19	14563051	14563150	+	0	NA	intron (NM_138501, intron 2 of 12)	intron (NM_138501, intron 2 of 12)	8966	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
102890	chr17	76526021	76526280	+	0	NA	Intergenic	AluY|SINE|Alu	-1436	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
2216	chr1	8815651	8816050	+	0	NA	intron (NM_012102, intron 1 of 23)	(TG)n|Simple_repeat|Simple_repeat	1790	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
35950	chr11	2533971	2534600	+	0	NA	intron (NM_181798, intron 2 of 15)	CpG	72831	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
232608	chr9	136433001	136433800	+	0	NA	intron (NM_001318502, intron 3 of 9)	intron (NM_001318502, intron 3 of 9)	6445	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
229748	chr9	125162421	125162950	+	0	NA	intron (NM_001123355, intron 3 of 7)	AluSx1|SINE|Alu	-19157	NM_001144877	286205		NM_173690	ENSG00000173611	SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
3139	chr1	12472651	12473880	+	0	NA	intron (NM_018156, intron 66 of 68)	intron (NM_018156, intron 66 of 68)	-33981	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
10545	chr1	66981321	66982100	+	0	NA	intron (NM_001077702, intron 13 of 15)	intron (NM_001077702, intron 13 of 15)	51454	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
5040	chr1	24529201	24529650	+	0	NA	intron (NM_001251985, intron 1 of 1)	AluJo|SINE|Alu	15111	NM_001251982	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
235761	chrX	49012771	49013180	+	0	NA	Intergenic	AluSz|SINE|Alu	-10711	NM_020137	56850		NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
100431	chr17	60729901	60730100	+	0	NA	intron (NM_001353144, intron 5 of 25)	intron (NM_001353144, intron 5 of 25)	52149	NM_001330414	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
155992	chr22	39922071	39922530	+	0	NA	intron (NM_004810, intron 1 of 7)	L2c|LINE|L2	-4304	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
115912	chr19	16607871	16608850	+	0	NA	intron (NM_004831, intron 1 of 2)	MER63D|DNA|hAT-Blackjack	19844	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
47731	chr12	6469761	6472030	+	0	NA	promoter-TSS (NM_014231)	promoter-TSS (NM_014231)	-218	NM_014231	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
140234	chr2	231783351	231783650	+	0	NA	intron (NM_001282949, intron 1 of 5)	L1ME3|LINE|L1	1769	NM_001282949	64708		NM_022730	ENSG00000144524	COPS7B	CSN7B|SGN7b	COP9 signalosome subunit 7B	protein-coding
18782	chr1	167521051	167521150	+	0	NA	Intergenic	Intergenic	-2571	NM_198053	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
97267	chr17	43014751	43016080	+	0	NA	TTS (NM_001330230)	TTS (NM_001330230)	6970	NM_006373	10493		NM_006373	ENSG00000108828	VAT1	VATI	vesicle amine transport 1	protein-coding
109380	chr19	652001	652730	+	0	NA	intron (NM_194460, intron 2 of 8)	CpG-12906	10849	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
187928	chr5	148859801	148860000	+	0	NA	Intergenic	Intergenic	33289	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
45145	chr11	117199001	117199200	+	0	NA	promoter-TSS (NM_001001522)	promoter-TSS (NM_001001522)	-194	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
235490	chrX	46912001	46912450	+	0	NA	promoter-TSS (NM_001077445)	promoter-TSS (NM_001077445)	-51	NM_001077445	9767		NM_014735	ENSG00000102221	JADE3	JADE-3|PHF16	jade family PHD finger 3	protein-coding
178402	chr4	147679251	147679500	+	0	NA	intron (NM_001350142, intron 2 of 12)	AluJb|SINE|Alu	4788	NM_138364	90826		NM_138364	ENSG00000164169	PRMT9	PRMT10	protein arginine methyltransferase 9	protein-coding
143162	chr20	24065971	24066350	+	0	NA	Intergenic	Intergenic	-77381	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
39896	chr11	62504551	62504650	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	41064	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
184114	chr5	94111101	94112200	+	0	NA	promoter-TSS (NM_001163418)	promoter-TSS (NM_001163418)	13	NM_032042	83989		NM_032042	ENSG00000113391	ARB2A	C5orf21|FAM172A|Toupee	ARB2 cotranscriptional regulator A	protein-coding
232958	chr9	136953671	136954600	+	0	NA	intron (NM_178536, intron 4 of 5)	intron (NM_178536, intron 4 of 5)	1862	NM_178536	286256		NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
23285	chr1	228007571	228007800	+	0	NA	intron (NM_033131, intron 1 of 3)	CpG	687	NM_033131	89780		NM_033131	ENSG00000154342	WNT3A	-	Wnt family member 3A	protein-coding
14257	chr1	143255511	143256150	+	0	NA	Intergenic	Intergenic	166762	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
46768	chr11	129859351	129859880	+	0	NA	TTS (NM_001331212)	TTS (NM_001331212)	33394	NM_006165	4798		NM_006165	ENSG00000170322	NFRKB	INO80G	nuclear factor related to kappaB binding protein	protein-coding
215019	chr7	152397251	152397550	+	0	NA	intron (NM_170606, intron 1 of 58)	intron (NM_170606, intron 1 of 58)	38603	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
141098	chr2	238417901	238418130	+	0	NA	Intergenic	Intergenic	-8912	NM_001040445	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
112622	chr19	6765801	6766180	+	0	NA	intron (NM_005490, intron 1 of 9)	intron (NM_005490, intron 1 of 9)	1445	NM_005490	10045		NM_005490	ENSG00000125731	SH2D3A	NSP1	SH2 domain containing 3A	protein-coding
9156	chr1	45543651	45544550	+	0	NA	Intergenic	Intergenic	-6683	NM_001202413	10327		NM_006066	ENSG00000117448	AKR1A1	ALDR1|ALR|ARM|DD3|HEL-S-6	aldo-keto reductase family 1 member A1	protein-coding
65290	chr14	50046551	50046850	+	0	NA	intron (NR_131171, intron 4 of 8)	LTR7|LTR|ERV1	-39180	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
205503	chr7	17952451	17953200	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-12317	NM_001350868	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
83236	chr16	23850551	23850850	+	0	NA	intron (NM_212535, intron 2 of 16)	L1MA7|LINE|L1	14717	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
221674	chr8	126274951	126275600	+	0	NA	Intergenic	Intergenic	-50220	NR_125421	101927657		NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
208588	chr7	72926871	72928200	+	0	NA	intron (NM_172020, intron 4 of 13)	AluSx1|SINE|Alu	27228	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
149431	chr21	31363601	31364280	+	0	NA	intron (NM_001353690, intron 1 of 27)	intron (NM_001353690, intron 1 of 27)	-19586	NM_001353687	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
150381	chr21	42269201	42269780	+	0	NA	intron (NM_207628, intron 4 of 16)	intron (NM_207628, intron 4 of 16)	45919	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
238222	chrX	139936351	139936600	+	0	NA	Intergenic	Intergenic	-3422	NM_001353812	286410		NM_173694	ENSG00000101974	ATP11C	ATPIG|ATPIQ|HACXL	ATPase phospholipid transporting 11C	protein-coding
73011	chr15	40745721	40746030	+	0	NA	intron (NM_018145, intron 4 of 12)	intron (NM_018145, intron 4 of 12)	9379	NM_018145	55177		NM_018145	ENSG00000137824	RMDN3	FAM82A2|FAM82C|RMD-3|RMD3|ptpip51	regulator of microtubule dynamics 3	protein-coding
231923	chr9	133108651	133109350	+	0	NA	intron (NM_001271775, intron 4 of 17)	intron (NM_001271775, intron 4 of 17)	12240	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
159430	chr3	13647321	13647900	+	0	NA	Intergenic	Intergenic	-3111	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
140380	chr2	233061171	233061330	+	0	NA	intron (NM_001017915, intron 1 of 26).2	intron (NM_001017915, intron 1 of 26).2	908	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
163597	chr3	51980901	51981100	+	0	NA	exon (NM_015407, exon 5 of 5)	exon (NM_015407, exon 5 of 5)	-2535	NM_001198897	95		NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
109234	chr19	500871	501130	+	0	NA	intron (NM_130762, intron 3 of 3)	AluJr|SINE|Alu	4514	NM_130760	8174		NM_130760	ENSG00000099866	MADCAM1	MACAM1	mucosal vascular addressin cell adhesion molecule 1	protein-coding
54550	chr12	92148051	92148550	+	0	NA	intron (NR_135036, intron 2 of 2)	AluSx|SINE|Alu	2215	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
189818	chr5	177004021	177004280	+	0	NA	intron (NM_001199297, intron 1 of 15)	intron (NM_001199297, intron 1 of 15)	2292	NM_016290	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
133740	chr2	127421501	127422200	+	0	NA	intron (NM_001375604, intron 3 of 8)	intron (NM_001375604, intron 3 of 8)	1768	NR_039944	100616187		NR_039944	ENSG00000264075	MIR4783	-	microRNA 4783	ncRNA
108924	chr18	79452301	79452900	+	0	NA	intron (NM_172389, intron 6 of 9)	intron (NM_172389, intron 6 of 9)	52301	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
18991	chr1	169365021	169365280	+	0	NA	intron (NR_104229, intron 1 of 12)	LTR8B|LTR|ERV1	2647	NM_013330	29922		NM_013330	ENSG00000143156	NME7	CFAP67|MN23H7|NDK 7|NDK7|nm23-H7	NME/NM23 family member 7	protein-coding
201518	chr6	149092971	149093330	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60489	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
65265	chr14	49972701	49973380	+	0	NA	Intergenic	Intergenic	6641	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
46539	chr11	128469301	128469500	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	52910	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
227645	chr9	92956451	92956550	+	0	NA	intron (NM_001083536, intron 1 of 17)	MLT1B|LTR|ERVL-MaLR	-7461	NM_001286993	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
211971	chr7	112795501	112795800	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5257	NM_001287497	64418		NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
126937	chr2	33395701	33395930	+	0	NA	intron (NM_001166265, intron 28 of 29)	intron (NM_001166265, intron 28 of 29)	-22701	NR_039628	100616136		NR_039628	ENSG00000283591	MIR4430	-	microRNA 4430	ncRNA
9365	chr1	47226551	47227030	+	0	NA	intron (NM_003189, intron 3 of 5)	intron (NM_003189, intron 3 of 5)	4925	NM_001287347	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
141066	chr2	238262771	238262930	+	0	NA	intron (NM_022817, intron 10 of 22)	intron (NM_022817, intron 10 of 22)	-22812	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
186433	chr5	136028771	136029300	+	0	NA	promoter-TSS (NM_000358)	promoter-TSS (NM_000358)	47	NM_000358	7045		NM_000358	ENSG00000120708	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor beta induced	protein-coding
34039	chr10	124730721	124731150	+	0	NA	intron (NM_014661, intron 1 of 4)	MER58A|DNA|hAT-Charlie	13443	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
29256	chr10	69110971	69111130	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-13103	NM_001035260	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
16150	chr1	153682271	153682430	+	0	NA	intron (NM_000906, intron 4 of 21)	AluSx1|SINE|Alu	3662	NM_000906	4881		NM_000906	ENSG00000169418	NPR1	ANPRA|ANPa|GUC2A|GUCY2A|NPRA	natriuretic peptide receptor 1	protein-coding
26278	chr10	14844971	14845150	+	0	NA	3' UTR (NM_001378785, exon 5 of 5)	3' UTR (NM_001378785, exon 5 of 5)	6754	NM_001378785	100421372		NM_001378785	ENSG00000284024	MSANTD7	-	Myb/SANT DNA binding domain containing 7	protein-coding
50483	chr12	47780951	47781500	+	0	NA	3' UTR (NM_017842, exon 3 of 3)	3' UTR (NM_017842, exon 3 of 3)	7987	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
11444	chr1	89839421	89839880	+	0	NA	intron (NM_018103, intron 1 of 2)	intron (NM_018103, intron 1 of 2)	17711	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
215313	chr7	157341751	157342730	+	0	NA	intron (NM_001363676, intron 1 of 6)	AluSx|SINE|Alu	5236	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
1781	chr1	6097121	6097780	+	0	NA	intron (NM_172130, intron 14 of 14)	L2a|LINE|L2	51562	NM_001199863	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
108042	chr18	59143701	59143900	+	0	NA	intron (NM_033280, intron 1 of 5)	intron (NM_033280, intron 1 of 5)	3916	NM_033280	90701		NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
122041	chr19	48641451	48641550	+	0	NA	intron (NR_136241, intron 3 of 8)	L2a|LINE|L2	3461	NR_004401	653677		NR_004401	ENSG00000293426	SEC1P	SEC1	secretory blood group 1, pseudogene	pseudo
43300	chr11	76204271	76204930	+	0	NA	intron (NM_004626, intron 1 of 4)	L2c|LINE|L2	1902	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
82291	chr16	15593301	15593750	+	0	NA	TTS (NM_014647)	TTS (NM_014647)	17570	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
57371	chr12	121793501	121795930	+	0	NA	TTS (NR_152735)	TTS (NR_152735)	-1027	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
51810	chr12	53417201	53417930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6290	NM_001164691	269		NM_020547	ENSG00000135409	AMHR2	AMHR|MISR2|MISRII|MRII	anti-Mullerian hormone receptor type 2	protein-coding
170344	chr3	184525121	184526030	+	0	NA	Intergenic	CpG	31343	NR_046593	100874079		NR_046593	ENSG00000230215	LINC01840	EIF2B5-AS1	long intergenic non-protein coding RNA 1840	ncRNA
211308	chr7	103347371	103348680	+	0	NA	intron (NM_002803, intron 1 of 11)	intron (NM_002803, intron 1 of 11)	382	NM_002803	5701		NM_002803	ENSG00000161057	PSMC2	MSS1|Nbla10058|RPT1|S7	proteasome 26S subunit, ATPase 2	protein-coding
209210	chr7	75440071	75440250	+	0	NA	intron (NM_001099415, intron 5 of 14)	AluSx1|SINE|Alu	29838	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
56637	chr12	118370671	118370830	+	0	NA	intron (NM_001346487, intron 1 of 20)	intron (NM_001346487, intron 1 of 20)	2157	NM_001346492	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
238197	chrX	137031421	137033000	+	0	NA	intron (NM_054021, intron 1 of 1)	intron (NM_054021, intron 1 of 1)	1785	NM_054021	83550		NM_054021	ENSG00000165370	GPR101	GPCR6|PAGH2|PITA2	G protein-coupled receptor 101	protein-coding
108199	chr18	63121871	63122100	+	0	NA	Intergenic	AluSx1|SINE|Alu	197784	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
219494	chr8	73894771	73895100	+	0	NA	Intergenic	AluY|SINE|Alu	15953	NR_147034	101926947		NR_147034		LINC01617	C8orf23|NCRNA00249|XLOC_006844	long intergenic non-protein coding RNA 1617	ncRNA
57902	chr12	123455801	123456000	+	0	NA	Intergenic	AluSz|SINE|Alu	-2239	NR_104103	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
12646	chr1	109247751	109248050	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	-1639	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
210291	chr7	99434451	99434750	+	0	NA	intron (NM_015545, intron 2 of 7)	A-rich|Low_complexity|Low_complexity	4198	NM_015545	26024		NM_015545	ENSG00000106246	PTCD1	-	pentatricopeptide repeat domain 1	protein-coding
99252	chr17	49713371	49713730	+	0	NA	intron (NM_030802, intron 7 of 7)	AluJr|SINE|Alu	-5586	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
208949	chr7	74178701	74179080	+	0	NA	intron (NM_022170, intron 1 of 6)	intron (NM_022170, intron 1 of 6)	4534	NM_022170	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
226278	chr9	68311901	68312430	+	0	NA	Intergenic	SATR1|Satellite|Satellite	9298	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
138947	chr2	218251521	218252050	+	0	NA	intron (NM_152862, intron 10 of 10)	intron (NM_152862, intron 10 of 10)	-7711	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
31773	chr10	98137771	98138600	+	0	NA	intron (NM_001351012, intron 1 of 8)	intron (NM_001351012, intron 1 of 8)	3528	NM_001256619	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
39351	chr11	59552021	59552830	+	0	NA	Intergenic	AluSx|SINE|Alu	37512	NM_001004711	390199		NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
30939	chr10	87340451	87340780	+	0	NA	intron (NR_024397, intron 1 of 5)	L1ME1|LINE|L1	-1796	NR_029408	439994		NR_029408	ENSG00000224914	LINC00863	-	long intergenic non-protein coding RNA 863	ncRNA
178174	chr4	142376201	142376680	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	26693	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
90511	chr17	1464501	1464900	+	0	NA	3' UTR (NM_001080950, exon 32 of 32)	3' UTR (NM_001080950, exon 32 of 32)	-8468	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
139333	chr2	219560321	219561130	+	0	NA	TTS (NM_001173408)	TTS (NM_001173408)	10814	NM_001173408	23363		NM_015311	ENSG00000124006	OBSL1	-	obscurin like cytoskeletal adaptor 1	protein-coding
49480	chr12	25203101	25203300	+	0	NA	intron (NM_001001660, intron 1 of 2)	intron (NM_001001660, intron 1 of 2)	7963	NM_001001660	144363		NM_001001660	ENSG00000205707	ETFRF1	LYRM5	electron transfer flavoprotein regulatory factor 1	protein-coding
94830	chr17	31393651	31393750	+	0	NA	intron (NM_032932, intron 1 of 14)	L3|LINE|CR1	2025	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
64574	chr14	24682071	24682430	+	0	NA	Intergenic	Intergenic	-48060	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
42594	chr11	72044551	72044850	+	0	NA	intron (NR_104476, intron 2 of 24)	AluSg|SINE|Alu	27602	NR_036123	100422953		NR_036123	ENSG00000263742	MIR3165	mir-3165	microRNA 3165	ncRNA
38970	chr11	47549371	47550900	+	0	NA	intron (NM_001376458, intron 1 of 13)	L1MB3|LINE|L1	2997	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
30288	chr10	75217971	75218300	+	0	NA	intron (NM_001324087, intron 6 of 11)	intron (NM_001324087, intron 6 of 11)	7981	NM_001184783	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
184636	chr5	107422601	107422800	+	0	NA	intron (NM_001962, intron 2 of 4)	L2a|LINE|L2	248237	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
198821	chr6	109071051	109071650	+	0	NA	intron (NM_014454, intron 1 of 9)	(T)n|Simple_repeat|Simple_repeat	23496	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
131322	chr2	96129201	96130780	+	0	NA	intron (NM_001002036, intron 7 of 8)	intron (NM_001002036, intron 7 of 8)	8446	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
82562	chr16	18591871	18592230	+	0	NA	intron (NR_003569, intron 8 of 9)	MLT1B|LTR|ERVL-MaLR	20802	NR_003569	653190		NR_003569	ENSG00000291057	ABCC6P1	-	ATP binding cassette subfamily C member 6 pseudogene 1	pseudo
99434	chr17	50116951	50117850	+	0	NA	intron (NM_174920, intron 4 of 10)	CpG	12760	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
44884	chr11	114398721	114399180	+	0	NA	3' UTR (NM_001271562, exon 1 of 1)	3' UTR (NM_001271562, exon 1 of 1)	1561	NM_001271562	54494		NM_019021	ENSG00000180425	C11orf71	URLC7	chromosome 11 open reading frame 71	protein-coding
147707	chr20	62355151	62355450	+	0	NA	non-coding (NR_109922, exon 2 of 3)	non-coding (NR_109922, exon 2 of 3)	2290	NR_109922	101928158		NR_109922	ENSG00000228812	LAMA5-AS1	-	LAMA5 antisense RNA 1	ncRNA
81166	chr16	4425221	4426630	+	0	NA	promoter-TSS (NM_001135110)	promoter-TSS (NM_001135110)	57	NM_005147	9093		NM_005147	ENSG00000103423	DNAJA3	HCA57|TID1|Tid1-L|Tid1-S|hTID-1	DnaJ heat shock protein family (Hsp40) member A3	protein-coding
98200	chr17	46127521	46127780	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluJb|SINE|Alu	65132	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
186221	chr5	134386321	134386580	+	0	NA	intron (NM_003337, intron 4 of 5)	AluSq2|SINE|Alu	14881	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
20711	chr1	200802901	200803350	+	0	NA	intron (NM_203459, intron 2 of 16)	intron (NM_203459, intron 2 of 16)	63553	NM_203459	23271		NM_203459	ENSG00000118200	CAMSAP2	CAMSAP1L1	calmodulin regulated spectrin associated protein family member 2	protein-coding
185640	chr5	131532901	131533350	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	102104	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
67887	chr14	74402721	74403130	+	0	NA	Intergenic	Intergenic	23285	NM_001105579	646658		NM_001105579	ENSG00000183379	SYNDIG1L	CAPUCIN|DSPC1|IFITMD4|SynDIG2|TMEM90A	synapse differentiation inducing 1 like	protein-coding
87305	chr16	70164851	70165680	+	0	NA	intron (NR_126007, intron 1 of 2)	intron (NR_126007, intron 1 of 2)	8183	NR_126007	400541		NR_126007	ENSG00000247228	LOC400541	-	uncharacterized LOC400541	ncRNA
4012	chr1	18931101	18931600	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	25326	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
74590	chr15	60562121	60562800	+	0	NA	intron (NM_134260, intron 1 of 11)	AluSc8|SINE|Alu	30066	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
112457	chr19	6382071	6382800	+	0	NA	intron (NM_002096, intron 6 of 12)	AluSx|SINE|Alu	-6519	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
204824	chr7	5693301	5693900	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-13139	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
228693	chr9	108843021	108843280	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	12836	NM_006686	10880		NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
77876	chr15	88912921	88913800	+	0	NA	promoter-TSS (NM_005928)	promoter-TSS (NM_005928)	19	NM_001310319	4240		NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule EGF and factor V/VIII domain containing	protein-coding
166517	chr3	114338551	114339780	+	0	NA	exon (NM_001348805, exon 11 of 11)	exon (NM_001348805, exon 11 of 11)	-12646	NR_038993	100131117		NR_038993	ENSG00000241560	ZBTB20-AS1	-	ZBTB20 antisense RNA 1	ncRNA
10458	chr1	66302101	66302300	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-29908	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
197413	chr6	73523131	73524600	+	0	NA	Intergenic	Intergenic	-2833	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
47577	chr12	4532171	4532330	+	0	NA	intron (NR_144380, intron 3 of 10)	MER83|LTR|ERV1	6219	NM_020374	57102		NM_020374	ENSG00000047621	FERRY3	C12orf4|Fy-3|MRT66	FERRY endosomal RAB5 effector complex subunit 3	protein-coding
227308	chr9	89424571	89424730	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	55240	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
53904	chr12	71610151	71610680	+	0	NA	3' UTR (NM_144982, exon 35 of 35)	3' UTR (NM_144982, exon 35 of 35)	53433	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
182939	chr5	70924521	70927700	+	0	NA	intron (NM_017411, intron 1 of 8).5	AluYm1|SINE|Alu	1023	NM_017411	6607		NM_017411	ENSG00000205571	SMN2	BCD541|C-BCD541|GEMIN1|SMNC|TDRD16B	survival of motor neuron 2, centromeric	protein-coding
163579	chr3	51955971	51957030	+	0	NA	TTS (NM_033008)	TTS (NM_033008)	1119	NM_080865	118442		NM_080865	ENSG00000180929	GPR62	GPCR8|KPG_005	G protein-coupled receptor 62	protein-coding
130324	chr2	84979251	84979550	+	0	NA	intron (NM_020122, intron 1 of 6)	AluSq2|SINE|Alu	8239	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
206986	chr7	38327421	38327880	+	0	NA	Intergenic	Intergenic	-13927	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
222480	chr8	140291301	140291500	+	0	NA	intron (NR_164662, intron 10 of 22)	intron (NR_164662, intron 10 of 22)	166344	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
115859	chr19	16550221	16550680	+	0	NA	3' UTR (NM_024881, exon 6 of 6)	3' UTR (NM_024881, exon 6 of 6)	-8013	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
74565	chr15	60535601	60536000	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	56622	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
1552	chr1	3482151	3482950	+	0	NA	Intergenic	Intergenic	27885	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
199684	chr6	122609971	122610930	+	0	NA	promoter-TSS (NM_181795)	promoter-TSS (NM_181795)	45	NM_181795	5570		NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
168642	chr3	150221171	150221800	+	0	NA	Intergenic	Intergenic	-17034	NR_110168	101927992		NR_110167	ENSG00000244541	LINC01213	-	long intergenic non-protein coding RNA 1213	ncRNA
72880	chr15	40307481	40308300	+	0	NA	promoter-TSS (NM_004573)	promoter-TSS (NM_004573)	45	NM_004573	5330		NM_004573	ENSG00000137841	PLCB2	PLC-beta-2	phospholipase C beta 2	protein-coding
232870	chr9	136821271	136821630	+	0	NA	intron (NM_024718, intron 1 of 14)	CpG	-9507	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
196669	chr6	44415471	44415650	+	0	NA	intron (NM_001253, intron 8 of 15)	MLT1J|LTR|ERVL-MaLR	-20081	NR_039785	100616352		NR_039785	ENSG00000266619	MIR4642	-	microRNA 4642	ncRNA
228794	chr9	111804071	111804230	+	0	NA	Intergenic	Intergenic	-9213	NM_001378211	158401		NM_173521	ENSG00000165181	SHOC1	C9orf84|MZIP2|SPGF75|ZIP2|ZIP2H	shortage in chiasmata 1	protein-coding
166491	chr3	114301971	114302530	+	0	NA	intron (NM_173799, intron 3 of 3)	LTR33|LTR|ERVL	8222	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
78432	chr15	92797151	92797750	+	0	NA	TTS (NR_033769)	TTS (NR_033769)	1966	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
142550	chr20	5121621	5122150	+	0	NA	intron (NM_002592, intron 1 of 6)	AluJo|SINE|Alu	-1927	NM_182649	5111		NM_002592	ENSG00000132646	PCNA	ATLD2	proliferating cell nuclear antigen	protein-coding
232345	chr9	135498401	135498600	+	0	NA	intron (NM_001048265, intron 2 of 2)	intron (NM_001048265, intron 2 of 2)	1369	NM_144654	138162		NM_144654	ENSG00000160345	PIERCE1	C9orf116|RbEST47	piercer of microtubule wall 1	protein-coding
4127	chr1	19326651	19326750	+	0	NA	intron (NR_109848, intron 7 of 9)	MIR1_Amn|SINE|MIR	14374	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
209128	chr7	75071451	75071800	+	0	NA	intron (NM_148842, intron 1 of 10)	AluSz|SINE|Alu	2177	NM_030798	81554		NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
13201	chr1	112633001	112633200	+	0	NA	intron (NM_006135, intron 1 of 9)	intron (NM_006135, intron 1 of 9)	13268	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
178927	chr4	158831771	158831930	+	0	NA	intron (NM_001366843, intron 3 of 17)	intron (NM_001366843, intron 3 of 17)	26011	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
230043	chr9	127391771	127392380	+	0	NA	intron (NR_104591, intron 26 of 26)	L2c|LINE|L2	-5063	NM_001271711	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
56720	chr12	120111901	120112100	+	0	NA	intron (NM_006861, intron 1 of 5)	AluSx1|SINE|Alu	4753	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
129086	chr2	65113571	65113930	+	0	NA	intron (NM_004161, intron 1 of 5)	intron (NM_004161, intron 1 of 5)	16356	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
3569	chr1	16167421	16169450	+	0	NA	Intergenic	AluSx3|SINE|Alu	-12366	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
95885	chr17	38879871	38880680	+	0	NA	intron (NM_001271608, intron 2 of 5)	intron (NM_001271608, intron 2 of 5)	10217	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
179237	chr4	174217571	174218530	+	0	NA	intron (NR_125896, intron 1 of 4)	intron (NR_125896, intron 1 of 4)	2348	NR_125896	101928509		NR_125896	ENSG00000248174	LINC02268	-	long intergenic non-protein coding RNA 2268	ncRNA
32173	chr10	101568701	101568900	+	0	NA	Intergenic	Intergenic	19457	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
196580	chr6	44166721	44167180	+	0	NA	intron (NM_007058, intron 2 of 22)	intron (NM_007058, intron 2 of 22)	8130	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105470	chr17	83062101	83063000	+	0	NA	Intergenic	LTR40b|LTR|ERVL	-10740	NM_001009905	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
199783	chr6	125991151	125991450	+	0	NA	intron (NM_001350583, intron 1 of 12)	AluJr|SINE|Alu	4760	NM_001031712	60487		NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
155274	chr22	38079551	38079850	+	0	NA	intron (NM_013356, intron 5 of 5)	AluJb|SINE|Alu	4484	NM_013356	23539		NM_013356	ENSG00000100156	SLC16A8	MCT3|REMP	solute carrier family 16 member 8	protein-coding
82766	chr16	21430301	21430700	+	0	NA	Intergenic	Intergenic	3955	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
78254	chr15	90816451	90817030	+	0	NA	TTS (NM_001287247)	TTS (NM_001287247)	-51848	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
171342	chr3	196047201	196047630	+	0	NA	Intergenic	Intergenic	34675	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
185996	chr5	133625801	133626100	+	0	NA	Intergenic	Intergenic	-13409	NM_015082	23105		NM_015082	ENSG00000053108	FSTL4	-	follistatin like 4	protein-coding
152551	chr22	21001031	21003350	+	0	NA	promoter-TSS (NM_001008695)	promoter-TSS (NM_001008695)	-72	NM_030573	80764		NM_030573	ENSG00000184436	THAP7	-	THAP domain containing 7	protein-coding
169563	chr3	170353101	170353300	+	0	NA	Intergenic	Intergenic	-4515	NM_001145098	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
21420	chr1	205317301	205318100	+	0	NA	intron (NM_030952, intron 1 of 6)	intron (NM_030952, intron 1 of 6)	4045	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
85832	chr16	57002451	57002750	+	0	NA	intron (NR_169520, intron 1 of 47)	L1MA2|LINE|L1	13043	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
234525	chrX	19600151	19600250	+	0	NA	intron (NM_001353892, intron 10 of 17)	AluJb|SINE|Alu	70799	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
166760	chr3	122258801	122259000	+	0	NA	intron (NM_001178065, intron 3 of 6)	MER5B|DNA|hAT-Charlie	-66348	NM_005213	1475		NM_005213	ENSG00000121552	CSTA	AREI|PSS4|STF1|STFA	cystatin A	protein-coding
110758	chr19	2361571	2361950	+	0	NA	Intergenic	Intergenic	-23505	NM_182973	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
94144	chr17	28337151	28337650	+	0	NA	intron (NM_021137, intron 1 of 6)	L2a|LINE|L2	1639	NM_021137	7126		NM_021137	ENSG00000109079	TNFAIP1	B12|B61|BTBD34|EDP1|hBACURD2	TNF alpha induced protein 1	protein-coding
39659	chr11	61676801	61677200	+	0	NA	Intergenic	Intergenic	-3391	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
154632	chr22	36321771	36322630	+	0	NA	intron (NM_002473, intron 6 of 40)	intron (NM_002473, intron 6 of 40)	-35293	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
171193	chr3	195695251	195695600	+	0	NA	intron (NR_122105, intron 2 of 4)	L1PA7|LINE|L1	-3976	NR_030296	693155		NR_030296	ENSG00000207650	MIR570	MIRN570|hsa-mir-570	microRNA 570	ncRNA
237721	chrX	125205471	125206130	+	0	NA	Intergenic	CpG	-114071	NM_001195272	100129520		NM_001195272	ENSG00000282815	TEX13C	-	TEX13 family member C	protein-coding
230349	chr9	128028401	128029480	+	0	NA	Intergenic	Intergenic	38380	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
100347	chr17	59904571	59904930	+	0	NA	intron (NM_001272044, intron 2 of 15)	AluSg|SINE|Alu	11629	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
147882	chr20	62863851	62863950	+	0	NA	Intergenic	AluSx|SINE|Alu	-2078	NM_001301726	10732		NM_006602	ENSG00000101190	TCFL5	CHA|E2BP-1|Figlb|SOSF1|bHLHe82	transcription factor like 5	protein-coding
193244	chr6	29933971	29934700	+	0	NA	Intergenic	Intergenic	-7120	NR_001317	80868		NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B	ncRNA
100223	chr17	59222221	59222480	+	0	NA	intron (NM_001165993, intron 1 of 9)	AluY|SINE|Alu	1839	NM_182569	284161		NM_182569	ENSG00000153982	GDPD1	GDE4	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding
217773	chr8	33320601	33320800	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	152446	NM_032664	84750		NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
135256	chr2	159723851	159724150	+	0	NA	intron (NM_001376237, intron 2 of 10)	HAL1|LINE|L1	-9964	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
182751	chr5	68283301	68283500	+	0	NA	intron (NM_181523, intron 7 of 15)	intron (NM_181523, intron 7 of 15)	-5119	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
220672	chr8	101157371	101157530	+	0	NA	Intergenic	Intergenic	12789	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
2176	chr1	8509871	8510680	+	0	NA	intron (NM_012102, intron 8 of 23)	intron (NM_012102, intron 8 of 23)	-15362	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
75274	chr15	65049251	65050680	+	0	NA	5' UTR (NM_178859, exon 2 of 4)	5' UTR (NM_178859, exon 2 of 4)	4578	NM_178859	123264		NM_178859	ENSG00000186198	SLC51B	OSTB|OSTBETA|PBAM2|SLC51A1BP	SLC51 subunit beta	protein-coding
40342	chr11	63938221	63939730	+	0	NA	promoter-TSS (NM_001300800)	promoter-TSS (NM_001300800)	-27	NM_024771	79829		NM_024771	ENSG00000110583	NAA40	NAT11|NatD|PATT1|hNatD	N-alpha-acetyltransferase 40, NatD catalytic subunit	protein-coding
234847	chrX	24498051	24498480	+	0	NA	intron (NM_001142386, intron 2 of 11)	MLT1K|LTR|ERVL-MaLR	32979	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
104849	chr17	81842201	81842400	+	0	NA	TTS (NM_000918)	TTS (NM_000918)	-7250	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
8602	chr1	41527871	41528030	+	0	NA	intron (NM_001127714, intron 4 of 7)	(CACCCT)n|Simple_repeat|Simple_repeat	-43267	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
5646	chr1	26278521	26279200	+	0	NA	TTS (NM_022778)	TTS (NM_022778)	-1226	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
18586	chr1	165392621	165393430	+	0	NA	Intergenic	Intergenic	31959	NM_001256571	6258		NM_006917	ENSG00000143171	RXRG	NR2B3|RXR-gamma|RXRC|RXRgamma	retinoid X receptor gamma	protein-coding
185968	chr5	133062401	133062950	+	0	NA	intron (NM_002154, intron 1 of 18)	intron (NM_002154, intron 1 of 18)	10662	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
89088	chr16	88476521	88476800	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	7742	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
217674	chr8	30105601	30106330	+	0	NA	3' UTR (NM_015344, exon 4 of 4)	3' UTR (NM_015344, exon 4 of 4)	10557	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
149347	chr21	29078851	29079710	+	0	NA	intron (NM_001286617, intron 1 of 9)	LTR75|LTR|ERVL	2166	NM_001286623	56911		NM_020152	ENSG00000156265	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
119862	chr19	41439221	41440280	+	0	NA	promoter-TSS (NM_001320841)	promoter-TSS (NM_001320841)	162	NR_030765	55101		NM_018035	ENSG00000105341	DMAC2	ATP5SL	distal membrane arm assembly component 2	protein-coding
38734	chr11	46889201	46890050	+	0	NA	intron (NM_002334, intron 15 of 37)	L2b|LINE|L2	28925	NM_002334	4038		NM_002334	ENSG00000134569	LRP4	CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2	LDL receptor related protein 4	protein-coding
149223	chr21	25508501	25508780	+	0	NA	Intergenic	MER81|DNA|hAT-Blackjack	-53505	NR_001458	114614		NR_001458	ENSG00000234883	MIR155HG	BIC|BIC-155|MIRHG2|NCRNA00172|miPEP155	MIR155 host gene	ncRNA
148933	chr21	9820701	9820900	+	0	NA	intron (NR_038377, intron 1 of 5)	SST1|Satellite|centr	261	NR_038377	441058		NM_001004347		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
93990	chr17	21987421	21987880	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-215345	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
214026	chr7	143285001	143285200	+	0	NA	non-coding (NR_040003, exon 1 of 2)	non-coding (NR_040003, exon 1 of 2)	142	NM_001282876	135932		NM_153345	ENSG00000178826	TMEM139	-	transmembrane protein 139	protein-coding
180935	chr5	34913751	34914050	+	0	NA	intron (NM_002853, intron 2 of 5)	FLAM_A|SINE|Alu	1604	NR_026591	5810		NM_002853	ENSG00000113456	RAD1	HRAD1|REC1	RAD1 checkpoint DNA exonuclease	protein-coding
40708	chr11	64790551	64791050	+	0	NA	intron (NM_004579, intron 27 of 31)	MIRb|SINE|MIR	-12258	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
179010	chr4	163894601	163895880	+	0	NA	intron (NM_001166373, intron 2 of 7)	intron (NM_001166373, intron 2 of 7)	-281706	NM_017923	55016		NM_017923	ENSG00000145416	MARCHF1	MARCH-I|MARCH1|RNF171	membrane associated ring-CH-type finger 1	protein-coding
141232	chr2	239601371	239601530	+	0	NA	Intergenic	Intergenic	-161410	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
41006	chr11	65418501	65419600	+	0	NA	Intergenic	Intergenic	-3748	NR_028272	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
211645	chr7	106253371	106253730	+	0	NA	intron (NM_005746, intron 9 of 10)	intron (NM_005746, intron 9 of 10)	31433	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
27987	chr10	43039471	43039630	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-37477	NM_020630	5979		NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1	ret proto-oncogene	protein-coding
218448	chr8	47960501	47962000	+	0	NA	intron (NM_182746, intron 2 of 16)	CpG	309	NM_182746	4173		NM_005914	ENSG00000104738	MCM4	CDC21|CDC54|IMD54|NKCD|NKGCD|P1-CDC21|hCdc21	minichromosome maintenance complex component 4	protein-coding
227971	chr9	95131371	95131600	+	0	NA	intron (NM_001243743, intron 8 of 14)	intron (NM_001243743, intron 8 of 14)	-45391	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA
57679	chr12	122838001	122838650	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	2868	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
238179	chrX	136875501	136876500	+	0	NA	intron (NM_001164803, intron 3 of 7)	AluSx1|SINE|Alu	3271	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
173720	chr4	15841721	15841980	+	0	NA	intron (NR_132660, intron 6 of 6)	L1HS|LINE|L1	63522	NR_132660	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
108177	chr18	62982321	62982950	+	0	NA	Intergenic	Intergenic	267094	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
125833	chr2	24359151	24361480	+	0	NA	5' UTR (NM_001348183, exon 1 of 29)	5' UTR (NM_001348183, exon 1 of 29)	221	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
88397	chr16	84630701	84631500	+	0	NA	Intergenic	Intergenic	-13022	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
68481	chr14	88003571	88003930	+	0	NA	Intergenic	Intergenic	-1385	NM_003608	8477		NM_003608	ENSG00000140030	GPR65	TDAG8|hTDAG8	G protein-coupled receptor 65	protein-coding
87456	chr16	71412301	71412500	+	0	NA	intron (NR_146574, intron 2 of 2)	intron (NR_146574, intron 2 of 2)	14064	NR_146574	105371333		NR_146574		LINC02136	-	long intergenic non-protein coding RNA 2136	ncRNA
86253	chr16	58391401	58391600	+	0	NA	promoter-TSS (NM_001126130)	promoter-TSS (NM_001126130)	-971	NM_001126130	64785		NM_022770	ENSG00000181938	GINS3	PSF3	GINS complex subunit 3	protein-coding
44419	chr11	104153001	104153400	+	0	NA	intron (NM_025208, intron 1 of 6)	L2|LINE|L2	10947	NM_033135	80310		NM_025208	ENSG00000170962	PDGFD	IEGF|MSTP036|SCDGF-B|SCDGFB	platelet derived growth factor D	protein-coding
34487	chr10	132538651	132538750	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	913	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
167108	chr3	127626021	127626800	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2775	NM_015720	50512		NM_015720	ENSG00000114631	PODXL2	EG|PODLX2	podocalyxin like 2	protein-coding
93965	chr17	21549301	21549500	+	0	NA	intron (NR_160801, intron 1 of 1)	L2|LINE|L2	2278	NR_160801	339263		NM_001113434	ENSG00000212719	LINC02693	C17orf51	long intergenic non-protein coding RNA 2693	ncRNA
88199	chr16	81795471	81795630	+	0	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	16259	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
114074	chr19	11098551	11099000	+	0	NA	intron (NM_001195800, intron 1 of 15)	AluJo|SINE|Alu	-9116	NR_163945	115271120		NR_163945		LDLR-AS1	-	LDLR antisense RNA 1	ncRNA
49982	chr12	42140071	42140230	+	0	NA	intron (NM_173601, intron 1 of 7)	AluY|SINE|Alu	4724	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
56131	chr12	111033321	111034180	+	0	NA	promoter-TSS (NM_015267)	promoter-TSS (NM_015267)	-415	NM_015267	23316		NM_015267	ENSG00000111249	CUX2	CDP2|CUTL2|DEE67|EIEE67	cut like homeobox 2	protein-coding
157939	chr22	49791951	49792630	+	0	NA	intron (NR_146335, intron 8 of 13)	intron (NR_146335, intron 8 of 13)	32041	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
188256	chr5	151076701	151076930	+	0	NA	intron (NM_001252390, intron 1 of 17)	intron (NM_001252390, intron 1 of 17)	4219	NM_001252386	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
180502	chr5	14261271	14261430	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	118008	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
71498	chr14	106005931	106006830	+	0	NA	Intergenic	Intergenic	-34111	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
36166	chr11	3159151	3159450	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	6010	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
117626	chr19	23378921	23379380	+	0	NA	intron (NM_003430, intron 1 of 3)	intron (NM_003430, intron 1 of 3)	16321	NM_003430	7644		NM_003430	ENSG00000167232	ZNF91	HPF7|HTF10	zinc finger protein 91	protein-coding
25500	chr10	7121071	7121730	+	0	NA	Intergenic	Intergenic	65384	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
149841	chr21	35040771	35040930	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-1424	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
217120	chr8	25171271	25171650	+	0	NA	Intergenic	Intergenic	-13229	NM_001322810	80005		NM_024940	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
32008	chr10	100993301	100993500	+	0	NA	exon (NM_001163813, exon 5 of 5)	exon (NM_001163813, exon 5 of 5)	-3671	NM_032429	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
56838	chr12	120237801	120239050	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	11738	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
86773	chr16	67718751	67720180	+	0	NA	promoter-TSS (NR_027398)	promoter-TSS (NR_027398)	-149	NM_001243650	81577		NM_030819	ENSG00000141098	GFOD2	-	Gfo/Idh/MocA-like oxidoreductase domain containing 2	protein-coding
72133	chr15	28989301	28989830	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	-5962	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
159840	chr3	16506371	16506530	+	0	NA	intron (NM_015150, intron 1 of 9)	intron (NM_015150, intron 1 of 9)	7249	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
179169	chr4	170027101	170027930	+	0	NA	Intergenic	CpG	-1120	NM_021647	9848		NM_021647	ENSG00000198948	MFAP3L	NYD-sp9	microfibril associated protein 3 like	protein-coding
190022	chr5	177495921	177496330	+	0	NA	intron (NM_203352, intron 2 of 12)	intron (NM_203352, intron 2 of 12)	1479	NR_103804	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
159375	chr3	13348851	13349850	+	0	NA	intron (NM_024923, intron 20 of 39)	L1M4b|LINE|L1	-66093	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
13886	chr1	119286671	119286850	+	0	NA	Intergenic	Intergenic	-41492	NR_146623	105378934		NR_146623	ENSG00000232650	LINC01780	-	long intergenic non-protein coding RNA 1780	ncRNA
8917	chr1	43987901	43988100	+	0	NA	intron (NM_003780, intron 6 of 6)	L2a|LINE|L2	-3596	NM_001349127	149473		NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding
138968	chr2	218271601	218271800	+	0	NA	intron (NM_015488, intron 2 of 9)	intron (NM_015488, intron 2 of 9)	1181	NM_001077399	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
66224	chr14	61326071	61326500	+	0	NA	intron (NM_006255, intron 1 of 13)	L1ME1|LINE|L1	4842	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
126630	chr2	28808651	28809230	+	0	NA	Intergenic	MIRb|SINE|MIR	-1894	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
84348	chr16	30204201	30204700	+	0	NA	TTS (NR_037608).2	TTS (NR_037608).2	2477	NR_002556	388242		NR_002556	ENSG00000290678	LOC388242	-	SAGA complex associated factor 29 pseudogene	pseudo
71105	chr14	104891071	104891230	+	0	NA	intron (NM_001112726, intron 13 of 18)	intron (NM_001112726, intron 13 of 18)	25836	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
38472	chr11	45803821	45806300	+	0	NA	promoter-TSS (NM_018389)	promoter-TSS (NM_018389)	-89	NM_018389	55343		NM_018389	ENSG00000181830	SLC35C1	CDG2C|FUCT1	solute carrier family 35 member C1	protein-coding
226136	chr9	63414471	63414830	+	0	NA	Intergenic	Intergenic	80112	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
187551	chr5	142778351	142778450	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	7173	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
57861	chr12	123361471	123361630	+	0	NA	intron (NM_018183, intron 1 of 31)	AluSp|SINE|Alu	3293	NR_107039	102466877		NR_107039	ENSG00000284425	MIR8072	hsa-mir-8072	microRNA 8072	ncRNA
197295	chr6	71291801	71292300	+	0	NA	intron (NM_001324266, intron 1 of 6)	MIRc|SINE|MIR	3239	NM_024576	79627		NM_024576	ENSG00000119900	OGFRL1	dJ331H24.1	opioid growth factor receptor like 1	protein-coding
75754	chr15	68352571	68352730	+	0	NA	intron (NM_001004439, intron 7 of 29)	MamTip1|DNA|hAT-Tip100	74905	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
49791	chr12	31950051	31950430	+	0	NA	Intergenic	AluJb|SINE|Alu	-9175	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
212573	chr7	128910501	128910700	+	0	NA	intron (NM_199349, intron 1 of 20)	CpG	109	NM_001366122	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
163546	chr3	51681021	51681780	+	0	NA	intron (NM_001243727, intron 2 of 3)	intron (NM_001243727, intron 2 of 3)	9773	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
176184	chr4	83398001	83398430	+	0	NA	Intergenic	L1PA4|LINE|L1	57608	NM_001297759	113510		NM_133636	ENSG00000163312	HELQ	HEL308	helicase, POLQ like	protein-coding
232521	chr9	136324601	136324930	+	0	NA	non-coding (NR_026964, exon 1 of 1)	non-coding (NR_026964, exon 1 of 1)	2558	NR_026964	26102		NR_026964	ENSG00000262075	DKFZP434A062	-	uncharacterized LOC26102	ncRNA
51545	chr12	52382901	52383300	+	0	NA	intron (NM_033045, intron 2 of 8)	intron (NM_033045, intron 2 of 8)	2552	NM_033045	3890		NM_033045	ENSG00000161849	KRT84	HB4|KRTHB4	keratin 84	protein-coding
203322	chr6	170162451	170162750	+	0	NA	non-coding (NR_125878, exon 2 of 3)	non-coding (NR_125878, exon 2 of 3)	1958	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
1140	chr1	2155321	2155600	+	0	NA	intron (NR_146911, intron 6 of 15)	(TGGTGA)n|Simple_repeat|Simple_repeat	28415	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
43471	chr11	78186751	78186850	+	0	NA	intron (NM_001029859, intron 1 of 1)	intron (NM_001029859, intron 1 of 1)	1826	NM_001029859	283219		NM_001029859	ENSG00000188997	KCTD21	KCASH2	potassium channel tetramerization domain containing 21	protein-coding
228288	chr9	98090601	98091000	+	0	NA	intron (NM_014788, intron 5 of 5)	AluSz|SINE|Alu	28422	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
37836	chr11	33301601	33301900	+	0	NA	intron (NM_001048200, intron 2 of 15)	AluJo|SINE|Alu	43419	NM_001278162	10114		NM_005734	ENSG00000110422	HIPK3	DYRK6|FIST3|PKY|YAK1	homeodomain interacting protein kinase 3	protein-coding
154555	chr22	36221771	36222480	+	0	NA	Intergenic	Intergenic	-17292	NM_145660	80832		NM_030643	ENSG00000100336	APOL4	APOL-IV|APOLIV	apolipoprotein L4	protein-coding
225203	chr9	34121171	34121530	+	0	NA	intron (NM_015397, intron 2 of 8)	MER90|LTR|ERV1	5348	NM_015397	25853		NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
100841	chr17	64123151	64123450	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	6844	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
234341	chrX	15143151	15143580	+	0	NA	Intergenic	Intergenic	126718	NM_024087	140462		NM_024087	ENSG00000102048	ASB9	-	ankyrin repeat and SOCS box containing 9	protein-coding
214277	chr7	149021451	149022000	+	0	NA	intron (NR_163905, intron 1 of 9)	intron (NR_163905, intron 1 of 9)	3584	NR_163909	9601		NM_004911	ENSG00000155660	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A member 4	protein-coding
57400	chr12	121826071	121826230	+	0	NA	intron (NM_001353345, intron 13 of 16)	FLAM_C|SINE|Alu	22141	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
84702	chr16	30807851	30807950	+	0	NA	Intergenic	AluSz|SINE|Alu	-20695	NM_001345970	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
57168	chr12	121396851	121397230	+	0	NA	Intergenic	AluYc|SINE|Alu	-3043	NM_025126	80196		NM_025126	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	ring finger protein 34	protein-coding
129534	chr2	69740101	69740300	+	0	NA	intron (NM_001320698, intron 3 of 14)	intron (NM_001320698, intron 3 of 14)	-1934	NM_001320702	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
173173	chr4	6703501	6704150	+	0	NA	Intergenic	Intergenic	6040	NM_203462	114932		NM_152301	ENSG00000178988	MRFAP1L1	PP784	Morf4 family associated protein 1 like 1	protein-coding
221218	chr8	120938821	120939380	+	0	NA	Intergenic	Intergenic	-127054	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
24528	chr1	244838671	244839300	+	0	NA	intron (NM_001312872, intron 2 of 4)	AluSz|SINE|Alu	3327	NM_198076	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
138640	chr2	210474551	210475050	+	0	NA	intron (NM_001136574, intron 2 of 9)	intron (NM_001136574, intron 2 of 9)	1905	NM_001136574	10314		NM_006055	ENSG00000115365	LANCL1	GPR69A|p40	LanC like glutathione S-transferase 1	protein-coding
146140	chr20	48661771	48662130	+	0	NA	intron (NM_020820, intron 15 of 39)	intron (NM_020820, intron 15 of 39)	166049	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
99576	chr17	50481221	50481500	+	0	NA	intron (NM_018346, intron 3 of 8)	L1MC4|LINE|L1	2500	NM_018346	55316		NM_018346	ENSG00000136444	RSAD1	HemW	radical S-adenosyl methionine domain containing 1	protein-coding
238146	chrX	136759951	136760290	+	0	NA	intron (NM_004840, intron 2 of 21)	intron (NM_004840, intron 2 of 21)	7695	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
19855	chr1	183033201	183033650	+	0	NA	intron (NM_002293, intron 1 of 27)	intron (NM_002293, intron 1 of 27)	10005	NM_002293	3915		NM_002293	ENSG00000135862	LAMC1	LAMB2	laminin subunit gamma 1	protein-coding
147750	chr20	62411501	62411950	+	0	NA	intron (NM_080833, intron 13 of 13)	intron (NM_080833, intron 13 of 13)	-4442	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
212240	chr7	121372651	121373550	+	0	NA	intron (NM_001040020, intron 3 of 9)	intron (NM_001040020, intron 3 of 9)	23208	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
15966	chr1	151889001	151889280	+	0	NA	intron (NM_053055, intron 3 of 5)	intron (NM_053055, intron 3 of 5)	20371	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
4175	chr1	19420601	19420800	+	0	NA	intron (NM_001313932, intron 1 of 4)	AluJb|SINE|Alu	63595	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
96558	chr17	40426721	40427430	+	0	NA	Intergenic	Intergenic	-9179	NM_001067	7153		NM_001067	ENSG00000131747	TOP2A	TOP2|TOP2alpha|TOPIIA|TP2A	DNA topoisomerase II alpha	protein-coding
97494	chr17	43880171	43880930	+	0	NA	intron (NM_001278381, intron 11 of 13)	intron (NM_001278381, intron 11 of 13)	20074	NM_001278376	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
153065	chr22	23296321	23296580	+	0	NA	intron (NM_004327, intron 16 of 22)	intron (NM_004327, intron 16 of 22)	-30166	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
78774	chr15	99273021	99273300	+	0	NA	intron (NR_135755, intron 2 of 8)	intron (NR_135755, intron 2 of 8)	15635	NR_073383	7190		NR_073383	ENSG00000259706	HSP90B2P	GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1	heat shock protein 90 beta family member 2, pseudogene	pseudo
64436	chr14	24200121	24200380	+	0	NA	Intergenic	AluSc5|SINE|Alu	-4514	NM_001289006	10548		NM_006405	ENSG00000100926	TM9SF1	HMP70|MP70	transmembrane 9 superfamily member 1	protein-coding
157751	chr22	46672571	46672930	+	0	NA	intron (NM_001366660, intron 13 of 17)	intron (NM_001366660, intron 13 of 17)	52364	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
183235	chr5	76381971	76382330	+	0	NA	Intergenic	Intergenic	-21135	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
44843	chr11	114086971	114087330	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	23939	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
229510	chr9	122349321	122349580	+	0	NA	Intergenic	Intergenic	-21083	NM_001271368	5742		NM_000962	ENSG00000095303	PTGS1	COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS	prostaglandin-endoperoxide synthase 1	protein-coding
184755	chr5	109859501	109859700	+	0	NA	intron (NM_002372, intron 20 of 21)	intron (NM_002372, intron 20 of 21)	-23582	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
226713	chr9	75143351	75143980	+	0	NA	intron (NM_012383, intron 9 of 9)	intron (NM_012383, intron 9 of 9)	55151	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
66712	chr14	64344201	64344550	+	0	NA	Intergenic	Intergenic	3236	NR_033777	441687		NR_033777		TEX21P	-	testis expressed 21, pseudogene	pseudo
88027	chr16	81095721	81097150	+	0	NA	promoter-TSS (NR_033249)	promoter-TSS (NR_033249)	-40	NR_033249	2653		NM_004483	ENSG00000140905	GCSH	GCE|MMDS7|NKH	glycine cleavage system protein H	protein-coding
78615	chr15	94080501	94080700	+	0	NA	intron (NR_120320, intron 2 of 8)	intron (NR_120320, intron 2 of 8)	27338	NR_120320	101927112		NR_120320	ENSG00000259724	LINC01581	-	long intergenic non-protein coding RNA 1581	ncRNA
156141	chr22	40163271	40163630	+	0	NA	intron (NM_001024843, intron 4 of 23)	AluJo|SINE|Alu	-14475	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
58467	chr12	132137701	132138380	+	0	NA	3' UTR (NM_175066, exon 15 of 15)	3' UTR (NM_175066, exon 15 of 15)	6279	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
206578	chr7	35688251	35688850	+	0	NA	intron (NM_022373, intron 2 of 8)	intron (NM_022373, intron 2 of 8)	6585	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
136762	chr2	181371971	181372900	+	0	NA	intron (NR_130784, intron 4 of 4)	intron (NR_130784, intron 4 of 4)	-66783	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
120090	chr19	42126501	42126930	+	0	NA	intron (NM_001247994, intron 1 of 13)	intron (NM_001247994, intron 1 of 13)	5731	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
216911	chr8	22700701	22700900	+	0	NA	Intergenic	Intergenic	-7320	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
104876	chr17	81866781	81867680	+	0	NA	TTS (NM_001185078)	TTS (NM_001185078)	3767	NM_001185077	396		NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
133518	chr2	120178171	120178530	+	0	NA	3' UTR (NM_001330310, exon 25 of 25)	3' UTR (NM_001330310, exon 25 of 25)	45050	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
128318	chr2	54662151	54662450	+	0	NA	TTS (NM_178313)	TTS (NM_178313)	-62712	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
186843	chr5	139451751	139451850	+	0	NA	intron (NM_001293739, intron 8 of 9)	(TG)n|Simple_repeat|Simple_repeat	10943	NM_001293739	641700		NM_001077693	ENSG00000249751	ECSCR	ARIA|ECSM2	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding
29572	chr10	71696301	71697530	+	0	NA	intron (NM_001171931, intron 21 of 24)	intron (NM_001171931, intron 21 of 24)	22863	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
201740	chr6	149921271	149921700	+	0	NA	intron (NM_001001788, intron 1 of 4)	intron (NM_001001788, intron 1 of 4)	1636	NM_001001788	353091		NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
35452	chr11	1456601	1456800	+	0	NA	intron (NM_001256630, intron 18 of 19)	intron (NM_001256630, intron 18 of 19)	24186	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
11483	chr1	90721401	90721930	+	0	NA	Intergenic	Intergenic	-4363	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
175152	chr4	55543301	55543500	+	0	NA	intron (NM_004898, intron 1 of 22)	intron (NM_004898, intron 1 of 22)	2532	NM_001267843	9575		NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
114938	chr19	13975271	13975980	+	0	NA	intron (NM_002918, intron 8 of 20)	intron (NM_002918, intron 8 of 20)	-22233	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
50444	chr12	47709271	47709800	+	0	NA	TTS (NM_001172439)	TTS (NM_001172439)	-3474	NM_001146075	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
103923	chr17	79825701	79826180	+	0	NA	intron (NR_146504, intron 2 of 2)	intron (NR_146504, intron 2 of 2)	2488	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
190944	chr6	2896851	2897350	+	0	NA	intron (NM_004155, intron 2 of 6)	AluJo|SINE|Alu	6209	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
161599	chr3	43155121	43155380	+	0	NA	Intergenic	L2c|LINE|L2	-49171	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
934	chr1	1725801	1726750	+	0	NA	intron (NM_001199787, intron 6 of 6)	AluY|SINE|Alu	-1918	NM_001313982	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
35234	chr11	837121	838080	+	0	NA	exon (NM_004357, exon 7 of 9)	exon (NM_004357, exon 7 of 9)	4648	NM_139029	977		NM_004357	ENSG00000177697	CD151	EBS7|GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24	CD151 molecule (Raph blood group)	protein-coding
165864	chr3	105984801	105985180	+	0	NA	Intergenic	Intergenic	-115589	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
166336	chr3	112942471	112942830	+	0	NA	intron (NM_170780, intron 1 of 6)	L1MC1|LINE|L1	32453	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
70602	chr14	102787651	102788100	+	0	NA	intron (NM_001199427, intron 1 of 7)	AluSz|SINE|Alu	10396	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
14531	chr1	144856771	144857150	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	138789	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
121388	chr19	46924721	46925230	+	0	NA	intron (NM_004491, intron 2 of 6)	intron (NM_004491, intron 2 of 6)	63978	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
226614	chr9	73170271	73170430	+	0	NA	TTS (NM_000700)	TTS (NM_000700)	18485	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
229767	chr9	125196571	125196930	+	0	NA	Intergenic	MIRc|SINE|MIR	3646	NR_135145	105376271		NR_135145		LOC105376271	-	uncharacterized LOC105376271	ncRNA
10810	chr1	77780921	77781180	+	0	NA	intron (NM_001363584, intron 1 of 15)	AluSx1|SINE|Alu	1245	NM_001363586	374986		NM_198549	ENSG00000180488	MIGA1	FAM73A	mitoguardin 1	protein-coding
83125	chr16	22535701	22536550	+	0	NA	exon (NM_001135865, exon 7 of 7)	exon (NM_001135865, exon 7 of 7)	-9573	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
230376	chr9	128078771	128079330	+	0	NA	intron (NM_001006641, intron 1 of 9)	intron (NM_001006641, intron 1 of 9)	10850	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
150702	chr21	43718761	43720730	+	0	NA	intron (NM_003681, intron 1 of 10)	CpG	616	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
8639	chr1	41728501	41729400	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	189972	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
138996	chr2	218322601	218324200	+	0	NA	exon (NM_022572, exon 1 of 9)	exon (NM_022572, exon 1 of 9)	221	NM_022572	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
59010	chr13	20160521	20161880	+	0	NA	promoter-TSS (NM_021954)	promoter-TSS (NM_021954)	-148	NM_021954	2700		NM_021954	ENSG00000121743	GJA3	CTRCT14|CX46|CZP3	gap junction protein alpha 3	protein-coding
207140	chr7	43113001	43113480	+	0	NA	intron (NM_001287059, intron 1 of 27)	CpG	593	NM_001287059	23072		NM_015052	ENSG00000002746	HECW1	NEDL1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding
181853	chr5	53110951	53111050	+	0	NA	intron (NR_104654, intron 1 of 1)	intron (NR_104654, intron 1 of 1)	1158	NR_104654	257396		NR_034107	ENSG00000247796	MOCS2-DT	-	MOCS2 divergent transcript	ncRNA
155847	chr22	39452551	39452900	+	0	NA	Intergenic	Intergenic	-4287	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
18561	chr1	162726651	162726750	+	0	NA	intron (NM_001354983, intron 3 of 17)	intron (NM_001354983, intron 3 of 17)	-64002	NM_001304513	51478		NM_016371	ENSG00000132196	HSD17B7	PRAP|SDR37C1	hydroxysteroid 17-beta dehydrogenase 7	protein-coding
89543	chr16	89200371	89200880	+	0	NA	promoter-TSS (NM_001366322)	promoter-TSS (NM_001366322)	-88	NM_001384769	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
44913	chr11	115267621	115268280	+	0	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	-65627	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
107646	chr18	48974851	48974950	+	0	NA	Intergenic	Intergenic	-24189	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
209553	chr7	77327221	77327480	+	0	NA	intron (NR_146938, intron 21 of 29)	intron (NR_146938, intron 21 of 29)	-87848	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
42328	chr11	68486401	68486850	+	0	NA	intron (NM_001352362, intron 2 of 24)	AluY|SINE|Alu	25873	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
206750	chr7	36681921	36682380	+	0	NA	intron (NM_001177507, intron 1 of 19)	L1MC5|LINE|L1	42344	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
14040	chr1	120748071	120748650	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	24421	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
91417	chr17	4709461	4712800	+	0	NA	intron (NR_047516, intron 1 of 13)	intron (NR_047516, intron 1 of 13)	498	NM_199004	409		NM_004313	ENSG00000141480	ARRB2	ARB2|ARR2|BARR2	arrestin beta 2	protein-coding
54955	chr12	96248521	96248830	+	0	NA	intron (NM_005230, intron 3 of 4)	intron (NM_005230, intron 3 of 4)	-6823	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
64103	chr14	22771901	22772100	+	0	NA	3' UTR (NM_005015, exon 10 of 10)	3' UTR (NM_005015, exon 10 of 10)	5312	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
185725	chr5	132067371	132067730	+	0	NA	Intergenic	Intergenic	-6239	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
152449	chr22	20607601	20607800	+	0	NA	Intergenic	Intergenic	-81855	NR_024592	266697		NR_024592		POM121L4P	POM121L1|POM121L1P	POM121 transmembrane nucleoporin like 4, pseudogene	pseudo
83624	chr16	28217971	28218650	+	0	NA	Intergenic	Intergenic	-6345	NM_015171	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
9199	chr1	45615121	45615380	+	0	NA	intron (NM_001195193, intron 8 of 12)	intron (NM_001195193, intron 8 of 12)	8804	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
4560	chr1	22049171	22049330	+	0	NA	Intergenic	Intergenic	-3459	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
65780	chr14	54488321	54489980	+	0	NA	promoter-TSS (NM_004124)	promoter-TSS (NM_004124)	-170	NM_004124	2764		NM_004124	ENSG00000197045	GMFB	GMF	glia maturation factor beta	protein-coding
13679	chr1	116590451	116590750	+	0	NA	intron (NM_001007237, intron 7 of 10)	G-rich|Low_complexity|Low_complexity	-19507	NM_001144822	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
120483	chr19	44750771	44751530	+	0	NA	intron (NM_005178, intron 1 of 8)	intron (NM_005178, intron 1 of 8)	2442	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
235632	chrX	48468121	48468750	+	0	NA	intron (NM_033518, intron 2 of 16)	intron (NM_033518, intron 2 of 16)	1825	NM_033518	92745		NM_033518	ENSG00000017483	SLC38A5	JM24|SN2|SNAT5|pp7194	solute carrier family 38 member 5	protein-coding
95350	chr17	35812971	35813330	+	0	NA	intron (NM_139215, intron 1 of 15).2	L1MEd|LINE|L1	3666	NM_003487	8148		NM_003487	ENSG00000270647	TAF15	Npl3|RBP56|TAF2N|TAFII68	TATA-box binding protein associated factor 15	protein-coding
239446	chrY	56709601	56710000	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-244455	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
147578	chr20	61229171	61229430	+	0	NA	Intergenic	Intergenic	-22961	NM_001794	1002		NM_001794	ENSG00000179242	CDH4	CAD4|R-CAD|RCAD	cadherin 4	protein-coding
68466	chr14	86838551	86838650	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-67178	NR_038445	283585		NR_038445	ENSG00000258804	LINC01148	-	long intergenic non-protein coding RNA 1148	ncRNA
110821	chr19	2483621	2484080	+	0	NA	Intergenic	L2b|LINE|L2	7723	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
141150	chr2	239246651	239246950	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-51343	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
35555	chr11	1645201	1645400	+	0	NA	Intergenic	Intergenic	15497	NM_001001480	439915		NM_001001480	ENSG00000185940	KRTAP5-5	KRTAP5-11|KRTAP5.5	keratin associated protein 5-5	protein-coding
40013	chr11	62654471	62654780	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1323	NM_030628	80789		NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
29323	chr10	69390121	69390780	+	0	NA	intron (NM_033498, intron 17 of 20)	intron (NM_033498, intron 17 of 20)	26468	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
23795	chr1	234230501	234231400	+	0	NA	intron (NM_001300845, intron 1 of 6)	intron (NM_001300845, intron 1 of 6)	16739	NM_001300845	148641		NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
213342	chr7	135513621	135513880	+	0	NA	Intergenic	AluJb|SINE|Alu	-3623	NM_001190848	4850		NM_013316	ENSG00000080802	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex subunit 4	protein-coding
174122	chr4	36218621	36218880	+	0	NA	intron (NR_146894, intron 2 of 32)	L1ME1|LINE|L1	25189	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
132040	chr2	101005371	101005530	+	0	NA	intron (NM_001098577, intron 3 of 4)	AluSq2|SINE|Alu	3161	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
237858	chrX	130170351	130171400	+	0	NA	Intergenic	Intergenic	-1087	NM_004794	9363		NM_004794	ENSG00000134594	RAB33A	RabS10	RAB33A, member RAS oncogene family	protein-coding
46311	chr11	125061301	125061700	+	0	NA	Intergenic	Intergenic	-1805	NM_198277	219855		NM_198277	ENSG00000134955	SLC37A2	SPX2|pp11662	solute carrier family 37 member 2	protein-coding
54437	chr12	91687051	91687750	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	454313	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
10940	chr1	84155501	84155880	+	0	NA	intron (NM_182948, intron 1 of 9)	intron (NM_182948, intron 1 of 9)	-8494	NM_001242857	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
29475	chr10	70564021	70564280	+	0	NA	intron (NM_014431, intron 18 of 19)	intron (NM_014431, intron 18 of 19)	38591	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
72355	chr15	31342821	31343430	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	16290	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
73835	chr15	49235501	49236000	+	0	NA	intron (NM_001352047, intron 4 of 11)	intron (NM_001352047, intron 4 of 11)	65503	NM_002044	2585		NM_002044	ENSG00000156958	GALK2	GK2	galactokinase 2	protein-coding
182828	chr5	69211751	69212270	+	0	NA	Intergenic	Intergenic	-5750	NM_033281	92259		NM_033281	ENSG00000134056	KGD4	DC47|MRP-S36|MRPS36	alpha-ketoglutarate dehydrogenase subunit 4	protein-coding
130873	chr2	87409071	87409430	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-46177	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
18292	chr1	161134521	161134780	+	0	NA	promoter-TSS (NR_156734)	promoter-TSS (NR_156734)	-500	NR_156734	112543491		NR_156734		LOC112543491	-	linc-UFC1	ncRNA
204373	chr7	2972551	2972900	+	0	NA	intron (NM_032415, intron 1 of 24)	MIRc|SINE|MIR	71142	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
187476	chr5	142143601	142144330	+	0	NA	intron (NM_030571, intron 6 of 7)	AluJo|SINE|Alu	35186	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
50055	chr12	44653921	44654180	+	0	NA	intron (NM_001145108, intron 13 of 19)	L2c|LINE|L2	221611	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
23760	chr1	232870951	232871250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	65684	NM_019090	54627		NM_019090	ENSG00000212916	MAP10	KIAA1383|MTR120	microtubule associated protein 10	protein-coding
66172	chr14	60647951	60648050	+	0	NA	promoter-TSS (NR_162089)	promoter-TSS (NR_162089)	-648	NR_162089	113218481		NR_162089		MIR9718	-	microRNA 9718	ncRNA
107990	chr18	58670911	58672530	+	0	NA	exon (NM_006785, exon 1 of 17)	exon (NM_006785, exon 1 of 17)	153	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
97608	chr17	44125371	44125530	+	0	NA	Intergenic	AluY|SINE|Alu	-1809	NM_001382393	10014		NM_005474	ENSG00000108840	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
151151	chr21	44917801	44918280	+	0	NA	intron (NM_001127491, intron 1 of 15)	intron (NM_001127491, intron 1 of 15)	2859	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
58784	chr12	132732971	132733350	+	0	NA	intron (NM_015114, intron 10 of 12)	CpG	22318	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
159692	chr3	15558801	15559230	+	0	NA	Intergenic	L1ME4a|LINE|L1	-37309	NM_080539	8292		NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
119612	chr19	40766701	40767050	+	0	NA	Intergenic	Intergenic	-8285	NM_001202553	8190		NM_006533	ENSG00000261857	MIA	CD-RAP|MIA1	MIA SH3 domain containing	protein-coding
179285	chr4	177251371	177251530	+	0	NA	Intergenic	L2b|LINE|L2	-58424	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
78114	chr15	90306251	90307300	+	0	NA	Intergenic	Intergenic	-41016	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
172593	chr4	2481601	2482330	+	0	NA	intron (NM_001185009, intron 2 of 8)	intron (NM_001185009, intron 2 of 8)	12512	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
2342	chr1	9233121	9233430	+	0	NA	Intergenic	Intergenic	-1499	NM_004285	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
202220	chr6	156804251	156804980	+	0	NA	intron (NM_001371656, intron 2 of 20)	THE1C|LTR|ERVL-MaLR	-24884	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
57201	chr12	121480551	121480850	+	0	NA	intron (NM_001005366, intron 12 of 22)	AluJo|SINE|Alu	-36348	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
76000	chr15	70812071	70812450	+	0	NA	Intergenic	Intergenic	-40979	NM_001284357	54839		NM_017691	ENSG00000137821	LRRC49	CSTPP2|PGs4	leucine rich repeat containing 49	protein-coding
178469	chr4	148377321	148377850	+	0	NA	intron (NR_148974, intron 2 of 6)	intron (NR_148974, intron 2 of 6)	64829	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
143109	chr20	23363701	23363900	+	0	NA	promoter-TSS (NM_001317019)	promoter-TSS (NM_001317019)	-563	NM_001317019	64412		NM_022482	ENSG00000125812	GZF1	JLSM|ZBTB23|ZNF336	GDNF inducible zinc finger protein 1	protein-coding
82992	chr16	22077721	22078050	+	0	NA	intron (NM_001164579, intron 2 of 2)	intron (NM_001164579, intron 2 of 2)	-14656	NM_173615	146177		NM_173615	ENSG00000175267	VWA3A	-	von Willebrand factor A domain containing 3A	protein-coding
30798	chr10	84394271	84394430	+	0	NA	intron (NM_001284240, intron 3 of 9)	L2c|LINE|L2	-30589	NM_001284243	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
225517	chr9	35726821	35727500	+	0	NA	intron (NM_006289, intron 1 of 56)	intron (NM_006289, intron 1 of 56)	5035	NM_006289	7094		NM_006289	ENSG00000137076	TLN1	ILWEQ|TLN|talin-1	talin 1	protein-coding
82823	chr16	21491101	21491450	+	0	NA	intron (NR_027155, intron 1 of 28)	MIRb|SINE|MIR	-10251	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
31096	chr10	89255021	89255480	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-3211	NM_001288979	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
69392	chr14	94041601	94043000	+	0	NA	intron (NM_023112, intron 3 of 5)	MIRc|SINE|MIR	15960	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
6418	chr1	28063571	28063730	+	0	NA	intron (NR_104214, intron 1 of 16)	intron (NR_104214, intron 1 of 16)	24960	NM_001282560	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
28729	chr10	61937521	61938200	+	0	NA	intron (NM_032199, intron 2 of 9)	intron (NM_032199, intron 2 of 9)	36161	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
38575	chr11	46114571	46115250	+	0	NA	intron (NR_147890, intron 1 of 18)	intron (NR_147890, intron 1 of 18)	5909	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
72406	chr15	31399571	31399730	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	72815	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
45683	chr11	119047951	119049200	+	0	NA	intron (NM_006389, intron 18 of 25)	intron (NM_006389, intron 18 of 25)	8630	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
190208	chr5	178222101	178222930	+	0	NA	non-coding (NR_103510, exon 10 of 14)	non-coding (NR_103510, exon 10 of 14)	10287	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
96746	chr17	41694901	41695500	+	0	NA	Intergenic	Intergenic	6315	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
174297	chr4	38489701	38490480	+	0	NA	intron (NR_110951, intron 2 of 7)	intron (NR_110951, intron 2 of 7)	-19677	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
213193	chr7	132509021	132509280	+	0	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	67320	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
26308	chr10	15084401	15085200	+	0	NA	intron (NM_001039844, intron 1 of 3)	MER51A|LTR|ERV1	3976	NR_144471	108949267		NR_144471		ACBD7-DCLRE1CP1	-	ACBD7-DCLRE1CP1 readthrough	ncRNA
43270	chr11	75667201	75667500	+	0	NA	intron (NM_207577, intron 1 of 2)	intron (NM_207577, intron 1 of 2)	1084	NM_207577	4135		NM_033063	ENSG00000171533	MAP6	MAP6-N|MTAP6|N-STOP|STOP	microtubule associated protein 6	protein-coding
42964	chr11	73751801	73752000	+	0	NA	intron (NM_198896, intron 1 of 7)	HAL1|LINE|L1	8193	NM_001243719	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
134077	chr2	131518151	131518680	+	0	NA	intron (NR_026922, intron 14 of 17)	intron (NR_026922, intron 14 of 17)	-9260	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
123741	chr19	55065901	55066530	+	0	NA	intron (NM_138412, intron 1 of 7).5	intron (NM_138412, intron 1 of 7).5	-3067	NR_027381	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
204079	chr7	2084321	2085680	+	0	NA	intron (NM_001304524, intron 9 of 16)	MIR|SINE|MIR	4052	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
225760	chr9	37301371	37301750	+	0	NA	intron (NM_001289119, intron 2 of 8)	AluJb|SINE|Alu	-121136	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
113943	chr19	10752051	10752880	+	0	NA	intron (NM_001005362, intron 1 of 19)	intron (NM_001005362, intron 1 of 19)	-27789	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
180987	chr5	35802251	35802350	+	0	NA	intron (NM_024867, intron 34 of 36)	intron (NM_024867, intron 34 of 36)	-54591	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
155525	chr22	38696001	38696200	+	0	NA	intron (NM_014876, intron 2 of 4)	intron (NM_014876, intron 2 of 4)	4843	NM_001360236	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
211720	chr7	106895301	106895780	+	0	NA	intron (NM_001282426, intron 10 of 10)	intron (NM_001282426, intron 10 of 10)	30061	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
51442	chr12	52039571	52040300	+	0	NA	intron (NM_001202234, intron 1 of 7)	L2b|LINE|L2	2220	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
173645	chr4	13535651	13536400	+	0	NA	Intergenic	CpG	-4608	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
138892	chr2	217789051	217789700	+	0	NA	Intergenic	Intergenic	-32782	NR_026597	729582		NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
82781	chr16	21449001	21449230	+	0	NA	intron (NR_027155, intron 26 of 28)	AluSg4|SINE|Alu	-14660	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
98370	chr17	46382221	46382500	+	0	NA	intron (NR_033799, intron 1 of 6)	AluJr|SINE|Alu	9547	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
234274	chrX	13473701	13474280	+	0	NA	Intergenic	Intergenic	-95611	NM_015507	25975		NM_015507	ENSG00000198759	EGFL6	MAEG|W80	EGF like domain multiple 6	protein-coding
191391	chr6	7899001	7899200	+	0	NA	intron (NR_037616, intron 6 of 12)	intron (NR_037616, intron 6 of 12)	10977	NM_001145549	81567		NM_022085	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5	protein-coding
8971	chr1	44627351	44627650	+	0	NA	intron (NM_001319957, intron 4 of 13)	intron (NM_001319957, intron 4 of 13)	-4468	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
17904	chr1	160123451	160123550	+	0	NA	intron (NM_000702, intron 4 of 22)	intron (NM_000702, intron 4 of 22)	7741	NM_000702	477		NM_000702	ENSG00000018625	ATP1A2	DEE98|FARIMPD|FHM2|MHP2	ATPase Na+/K+ transporting subunit alpha 2	protein-coding
26742	chr10	22693321	22694900	+	0	NA	intron (NM_005028, intron 1 of 9)	MER8|DNA|TcMar-Tigger	19998	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
150445	chr21	42462071	42462230	+	0	NA	Intergenic	Intergenic	34074	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
104972	chr17	81979071	81979330	+	0	NA	exon (NM_024083, exon 2 of 16)	exon (NM_024083, exon 2 of 16)	1571	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
83977	chr16	29284901	29285300	+	0	NA	Intergenic	Intergenic	-17187	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
196819	chr6	46170521	46171400	+	0	NA	promoter-TSS (NM_021572)	promoter-TSS (NM_021572)	20	NM_001290072	59084		NM_021572	ENSG00000112796	ENPP5	NPP-5|NPP5	ectonucleotide pyrophosphatase/phosphodiesterase family member 5	protein-coding
86113	chr16	57661801	57662200	+	0	NA	intron (NM_001370440, intron 14 of 14)	intron (NM_001370440, intron 14 of 14)	-6306	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
90339	chr17	1183001	1183230	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	-3134	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
99951	chr17	57379401	57379600	+	0	NA	intron (NM_170721, intron 4 of 9)	(TTCTTTC)n|Simple_repeat|Simple_repeat	122481	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
225491	chr9	35645921	35647780	+	0	NA	non-coding (NR_135130, exon 2 of 2)	non-coding (NR_135130, exon 2 of 2)	580	NR_135130	101926948		NR_135130		LOC101926948	-	uncharacterized LOC101926948	ncRNA
193877	chr6	31578451	31579150	+	0	NA	TTS (NM_000594).6	TTS (NM_000594).6	3235	NM_000594	7124		NM_000594	ENSG00000232810	TNF	DIF|TNF-alpha|TNFA|TNFSF2|TNLG1F	tumor necrosis factor	protein-coding
216532	chr8	21041021	21041780	+	0	NA	Intergenic	Intergenic	67414	NR_033894	286114		NR_033894	ENSG00000253199	LINC02153	-	long intergenic non-protein coding RNA 2153	ncRNA
71604	chr14	106626901	106627730	+	0	NA	Intergenic	Intergenic	144876	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
162924	chr3	49427721	49427980	+	0	NA	intron (NM_032316, intron 1 of 5)	MER5B|DNA|hAT-Charlie	1474	NM_032316	84276		NM_032316	ENSG00000145029	NICN1	-	nicolin 1, tubulin polyglutamylase complex subunit	protein-coding
134226	chr2	134718701	134719480	+	0	NA	promoter-TSS (NM_030923)	promoter-TSS (NM_030923)	-90	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
90137	chr17	116901	117100	+	0	NA	Intergenic	Intergenic	-20569	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
177694	chr4	121873571	121873880	+	0	NA	TTS (NM_001130698)	TTS (NM_001130698)	-3228	NM_018190	55212		NM_018190	ENSG00000138686	BBS7	BBS2L1	Bardet-Biedl syndrome 7	protein-coding
29093	chr10	68076601	68076800	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-1417	NM_001278185	26091		NM_015601	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
140477	chr2	233182601	233182800	+	0	NA	intron (NM_001017915, intron 19 of 26).2	MIRb|SINE|MIR	-68871	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
222399	chr8	134261621	134261880	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-336321	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
165713	chr3	102225301	102225650	+	0	NA	Intergenic	Intergenic	61770	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
206882	chr7	37669701	37670100	+	0	NA	Intergenic	Intergenic	-13866	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
216905	chr8	22693071	22694000	+	0	NA	promoter-TSS (NM_001199881)	promoter-TSS (NM_001199881)	-55	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
214844	chr7	151304701	151305050	+	0	NA	Intergenic	(AAAC)n|Simple_repeat|Simple_repeat	-27726	NM_003078	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
191897	chr6	15365271	15365630	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	116595	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
11238	chr1	88899201	88899400	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-7733	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
160195	chr3	23809301	23809580	+	0	NA	intron (NM_182666, intron 2 of 4)	intron (NM_182666, intron 2 of 4)	-1014	NM_001202476	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
68280	chr14	77097401	77098950	+	0	NA	promoter-TSS (NM_033426)	promoter-TSS (NM_033426)	-83	NM_033426	85457		NM_033426	ENSG00000198894	CIPC	KIAA1737	CLOCK interacting pacemaker	protein-coding
233463	chr9	137675671	137676230	+	0	NA	intron (NM_001354612, intron 1 of 8)	AluYa5|SINE|Alu	56945	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
187449	chr5	142115851	142116150	+	0	NA	intron (NM_030571, intron 1 of 7)	MER2|DNA|TcMar-Tigger	7221	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
60978	chr13	46665721	46666200	+	0	NA	intron (NM_015116, intron 2 of 18)	intron (NM_015116, intron 2 of 18)	112790	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
229889	chr9	126513401	126513600	+	0	NA	Intergenic	MIRb|SINE|MIR	-100428	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
119998	chr19	41922621	41923030	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	5624	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
159918	chr3	16990971	16991130	+	0	NA	intron (NM_015184, intron 1 of 5)	LTR33A_|LTR|ERVL	57854	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
15981	chr1	151939221	151939480	+	0	NA	Intergenic	AluJb|SINE|Alu	-29839	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
189647	chr5	176195271	176195430	+	0	NA	intron (NR_036494, intron 1 of 25)	intron (NR_036494, intron 1 of 25)	3945	NR_036494	643201		NR_036494	ENSG00000248596	CEP192P1	-	CEP192 pseudogene 1	pseudo
11989	chr1	94820001	94820550	+	0	NA	promoter-TSS (NM_001258340)	promoter-TSS (NM_001258340)	-43	NR_160784	101928079		NR_104131	ENSG00000293271	SLC44A3-AS1	LINC01057|XLOC_000303	SLC44A3 antisense RNA 1	ncRNA
193371	chr6	30331851	30332350	+	0	NA	intron (NM_001369523, intron 5 of 8).5	MIRb|SINE|MIR	2789	NM_001199119	202658		NM_001199119	ENSG00000248167	TRIM39-RPP21	TRIM39R	TRIM39-RPP21 readthrough	protein-coding
61563	chr13	67224271	67224500	+	0	NA	3' UTR (NM_001318374, exon 2 of 2)	3' UTR (NM_001318374, exon 2 of 2)	5951	NM_020403	5101		NM_020403	ENSG00000184226	PCDH9	-	protocadherin 9	protein-coding
216655	chr8	22128801	22129000	+	0	NA	exon (NM_005144, exon 2 of 19)	exon (NM_005144, exon 2 of 19)	2110	NM_005144	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
161708	chr3	43690121	43691560	+	0	NA	promoter-TSS (NR_158560)	promoter-TSS (NR_158560)	-30	NM_001365650	51099		NM_016006	ENSG00000011198	ABHD5	CGI58|IECN2|NCIE2	abhydrolase domain containing 5, lysophosphatidic acid acyltransferase	protein-coding
33875	chr10	124416051	124416850	+	0	NA	intron (NM_001322970, intron 1 of 11)	intron (NM_001322970, intron 1 of 11)	2473	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
39701	chr11	61744301	61744500	+	0	NA	exon (NM_006133, exon 20 of 20)	exon (NM_006133, exon 20 of 20)	-8236	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
175384	chr4	70706701	70707150	+	0	NA	intron (NM_001130709, intron 1 of 11)	intron (NM_001130709, intron 1 of 11)	1988	NM_001130709	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
77689	chr15	85644751	85645100	+	0	NA	intron (NM_007200, intron 9 of 36)	L3|LINE|CR1	24975	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
34764	chr11	199201	199400	+	0	NA	intron (NM_001286136, intron 5 of 5)	intron (NM_001286136, intron 5 of 5)	2539	NM_053280	113746		NM_053280	ENSG00000177947	CIMAP1A	CT135|ODF3|SHIPPO1|TISP50	ciliary microtubule associated protein 1A	protein-coding
211173	chr7	102587421	102588080	+	0	NA	exon (NM_006989, exon 18 of 21)	exon (NM_006989, exon 18 of 21)	-15129	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
94645	chr17	30121421	30122130	+	0	NA	intron (NM_032141, intron 2 of 6)	AluSg|SINE|Alu	-4615	NR_036149	100423003		NR_036149	ENSG00000284399	MIR3184	-	microRNA 3184	ncRNA
215056	chr7	152712751	152713080	+	0	NA	Intergenic	(CCCTC)n|Simple_repeat|Simple_repeat	-36774	NM_005431	7516		NM_005431	ENSG00000196584	XRCC2	FANCU|POF17|SPGF50	X-ray repair cross complementing 2	protein-coding
7706	chr1	36086951	36087350	+	0	NA	intron (NM_014466, intron 6 of 9)	intron (NM_014466, intron 6 of 9)	-1742	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
239479	chrY	56738701	56739250	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-215280	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
109477	chr19	809621	809950	+	0	NA	intron (NM_031991, intron 12 of 13)	AluJr|SINE|Alu	-3799	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	mir-3187	microRNA 3187	ncRNA
55284	chr12	103269051	103269880	+	0	NA	intron (NR_103526, intron 7 of 10)	(AAT)n|Simple_repeat|Simple_repeat	117623	NR_126333	101929058		NR_126333	ENSG00000257860	C12orf42-AS1	-	C12orf42 antisense RNA 1	ncRNA
185892	chr5	132750551	132751000	+	0	NA	TTS (NM_001098811)	TTS (NM_001098811)	3330	NM_001287252	645121		NM_001039780	ENSG00000205089	CCNI2	-	cyclin I family member 2	protein-coding
110570	chr19	2145601	2146500	+	0	NA	intron (NM_001374799, intron 1 of 31)	intron (NM_001374799, intron 1 of 31)	5516	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
200071	chr6	130076351	130076750	+	0	NA	intron (NM_001007102, intron 12 of 21)	intron (NM_001007102, intron 12 of 21)	56906	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
63334	chr13	114017851	114017950	+	0	NA	intron (NM_001320822, intron 11 of 23).2	intron (NM_001320822, intron 11 of 23).2	-43824	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
62854	chr13	110387501	110387700	+	0	NA	intron (NM_001846, intron 4 of 47)	intron (NM_001846, intron 4 of 47)	46642	NR_107040	102465872		NR_107040	ENSG00000276765	MIR8073	hsa-mir-8073	microRNA 8073	ncRNA
152476	chr22	20741601	20742250	+	0	NA	intron (NM_001362863, intron 31 of 53)	intron (NM_001362863, intron 31 of 53)	-32188	NM_000185	3053		NM_000185	ENSG00000099937	SERPIND1	D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10	serpin family D member 1	protein-coding
219148	chr8	66421851	66421950	+	0	NA	non-coding (NR_040434, exon 3 of 3)	non-coding (NR_040434, exon 3 of 3)	7077	NR_040434	100505676		NM_001242759	ENSG00000246145	RRS1-DT	RRS1-AS1	RRS1 divergent transcript	ncRNA
165614	chr3	101686181	101687280	+	0	NA	promoter-TSS (NM_000986)	promoter-TSS (NM_000986)	-12	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
60741	chr13	44437921	44438330	+	0	NA	promoter-TSS (NM_001243797)	promoter-TSS (NM_001243797)	-871	NM_001243797	8848		NM_006022	ENSG00000102804	TSC22D1	HUCEP-2|Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
226864	chr9	78073801	78074000	+	0	NA	Intergenic	Intergenic	-42089	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
225336	chr9	34630351	34630850	+	0	NA	Intergenic	Intergenic	-1545	NM_001371945	138715		NM_001017363	ENSG00000205143	ARID3C	-	AT-rich interaction domain 3C	protein-coding
231121	chr9	129830121	129830380	+	0	NA	intron (NM_016520, intron 6 of 8)	AluJo|SINE|Alu	5025	NM_016520	51759		NM_016520	ENSG00000136819	C9orf78	CSU2|HCA59|HSPC220|TLS1|bA409K20.3	chromosome 9 open reading frame 78	protein-coding
177793	chr4	123390901	123391400	+	0	NA	Intergenic	Intergenic	-5645	NM_001258038	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
64078	chr14	22577551	22577850	+	0	NA	intron (NM_001344, intron 1 of 2)	L1MB3|LINE|L1	11524	NM_001344	1603		NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
42098	chr11	67545651	67545770	+	0	NA	Intergenic	Intergenic	-22264	NM_001318496	51475		NM_016366	ENSG00000167791	CABP2	DFNB93	calcium binding protein 2	protein-coding
168890	chr3	152315751	152316580	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	17151	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
43750	chr11	86140801	86141000	+	0	NA	Intergenic	Intergenic	-71040	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
3254	chr1	14182951	14183050	+	0	NA	Intergenic	Intergenic	236973	NR_149058	105376762		NR_149058	ENSG00000234593	KAZN-AS1	-	KAZN antisense RNA 1	ncRNA
99248	chr17	49707521	49709300	+	0	NA	promoter-TSS (NM_001278784)	promoter-TSS (NM_001278784)	-446	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
15792	chr1	151252671	151253200	+	0	NA	Intergenic	Intergenic	-1799	NM_002810	5710		NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	proteasome 26S subunit ubiquitin receptor, non-ATPase 4	protein-coding
157828	chr22	47209421	47210000	+	0	NA	Intergenic	Intergenic	-135861	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
123412	chr19	54023771	54024180	+	0	NA	Intergenic	Intergenic	32338	NM_031897	59285		NM_031897	ENSG00000130433	CACNG6	-	calcium voltage-gated channel auxiliary subunit gamma 6	protein-coding
237677	chrX	124349051	124349950	+	0	NA	intron (NM_002351, intron 1 of 3)	intron (NM_002351, intron 1 of 3)	2937	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
175230	chr4	56914601	56915180	+	0	NA	intron (NM_001193508, intron 2 of 3)	intron (NM_001193508, intron 2 of 3)	5977	NM_001193508	5978		NM_005612	ENSG00000084093	REST	DFNA27|GINGF5|HGF5|NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
107679	chr18	49399101	49399300	+	0	NA	intron (NM_001374431, intron 2 of 16)	L2c|LINE|L2	61445	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
7534	chr1	34867571	34867730	+	0	NA	intron (NM_001080418, intron 9 of 11)	intron (NM_001080418, intron 9 of 11)	-7901	NM_001320261	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
191436	chr6	10532471	10532630	+	0	NA	intron (NM_145649, intron 3 of 4)	AluJo|SINE|Alu	4180	NM_001374747	2651		NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein-coding
13861	chr1	117674301	117674950	+	0	NA	Intergenic	Intergenic	68577	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
165136	chr3	71753201	71754800	+	0	NA	promoter-TSS (NM_001282886)	promoter-TSS (NM_001282886)	145	NM_018971	2850		NM_018971	ENSG00000170837	GPR27	SREB1	G protein-coupled receptor 27	protein-coding
14611	chr1	145342671	145342830	+	0	NA	intron (NM_001278267, intron 74 of 137)	intron (NM_001278267, intron 74 of 137)	61634	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
183287	chr5	76541321	76541580	+	0	NA	intron (NM_006633, intron 2 of 35)	L1MB4|LINE|L1	-5959	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
36888	chr11	10746751	10747050	+	0	NA	Intergenic	Intergenic	-4346	NM_001346279	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
32713	chr10	104218401	104218600	+	0	NA	TTS (NR_030340)	TTS (NR_030340)	383	NR_030340	693194		NR_030340	ENSG00000208033	MIR609	MIRN609|hsa-mir-609	microRNA 609	ncRNA
110243	chr19	1781271	1781430	+	0	NA	TTS (NM_138813)	TTS (NM_138813)	27844	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
205854	chr7	24936421	24936930	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	43503	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
21221	chr1	204127721	204128080	+	0	NA	TTS (NM_005686)	TTS (NM_005686)	-13508	NR_123739	101929441		NR_123739	ENSG00000230550	ERLNC1	ElncRNA1|TC0101441	estrogen receptor responsive lncRNA 1	ncRNA
25229	chr10	5888371	5891080	+	0	NA	promoter-TSS (NM_178150)	promoter-TSS (NM_178150)	153	NM_001258452	84893		NM_032807	ENSG00000134452	FBH1	FBXO18|Fbx18|hFBH1	F-box DNA helicase 1	protein-coding
59641	chr13	28142451	28142750	+	0	NA	intron (NM_175854, intron 1 of 18)	AluJb|SINE|Alu	-3426	NR_029383	100288730		NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
110327	chr19	1863301	1865500	+	0	NA	promoter-TSS (NM_031918)	promoter-TSS (NM_031918)	-821	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
167097	chr3	127586071	127586230	+	0	NA	TTS (NR_107016)	TTS (NR_107016)	1026	NR_107016	102465857		NR_107016	ENSG00000276083	MIR7976	hsa-mir-7976	microRNA 7976	ncRNA
124594	chr2	863771	864250	+	0	NA	intron (NR_033880, intron 1 of 3)	intron (NR_033880, intron 1 of 3)	4416	NR_111963	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
142778	chr20	13008821	13009080	+	0	NA	promoter-TSS (NM_001349945)	promoter-TSS (NM_001349945)	-22	NM_001349945	55304		NM_018327	ENSG00000172296	SPTLC3	C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b	serine palmitoyltransferase long chain base subunit 3	protein-coding
138725	chr2	213151371	213152600	+	0	NA	promoter-TSS (NM_001079526)	promoter-TSS (NM_001079526)	-373	NM_001371276	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
13400	chr1	113955071	113955430	+	0	NA	intron (NM_181358, intron 2 of 13)	intron (NM_181358, intron 2 of 13)	1373	NM_181358	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
36181	chr11	3205151	3205750	+	0	NA	Intergenic	Intergenic	-12882	NR_027138	283303		NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	ncRNA
199061	chr6	111566871	111567480	+	0	NA	intron (NM_147686, intron 6 of 8)	intron (NM_147686, intron 6 of 8)	104	NM_001164283	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
147986	chr20	63006071	63008230	+	0	NA	promoter-TSS (NM_080606)	promoter-TSS (NM_080606)	-186	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
41344	chr11	65929971	65930530	+	0	NA	Intergenic	AluSc|SINE|Alu	10824	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
114829	chr19	13822601	13822800	+	0	NA	intron (NM_023072, intron 9 of 12)	AluSp|SINE|Alu	13659	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
74462	chr15	59724751	59725230	+	0	NA	Intergenic	Intergenic	-35670	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
13168	chr1	111989471	111990380	+	0	NA	promoter-TSS (NR_145438)	promoter-TSS (NR_145438)	-257	NM_001378969	3752		NM_004980	ENSG00000171385	KCND3	BRGDA9|KCND3L|KCND3S|KSHIVB|KV4.3|SCA19|SCA22	potassium voltage-gated channel subfamily D member 3	protein-coding
132454	chr2	105861271	105862150	+	0	NA	intron (NM_001004722, intron 3 of 3)	AluSz|SINE|Alu	9863	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
176352	chr4	88382531	88383530	+	0	NA	intron (NM_017912, intron 1 of 22)	intron (NM_017912, intron 1 of 22)	4178	NM_001165136	55008		NM_017912	ENSG00000138642	HERC6	-	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein-coding
22954	chr1	226000821	226001330	+	0	NA	Intergenic	Intergenic	-1732	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
193658	chr6	30906901	30907100	+	0	NA	Intergenic	AluSx|SINE|Alu	-1207	NM_001517	2968		NM_001517	ENSG00000213780	GTF2H4	P52|TFB2|TFIIH	general transcription factor IIH subunit 4	protein-coding
75122	chr15	64532671	64533030	+	0	NA	intron (NM_015042, intron 2 of 9)	HAL1|LINE|L1	72272	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
128975	chr2	64665651	64665950	+	0	NA	Intergenic	Intergenic	-11887	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
204046	chr7	1945801	1946200	+	0	NA	intron (NM_001304524, intron 14 of 16)	intron (NM_001304524, intron 14 of 16)	-5429	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
175017	chr4	52590151	52590450	+	0	NA	TTS (NM_001286768)	TTS (NM_001286768)	66239	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
220395	chr8	100249901	100250580	+	0	NA	Intergenic	AluSx|SINE|Alu	51953	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
31326	chr10	92846201	92846780	+	0	NA	intron (NM_001013848, intron 2 of 22)	intron (NM_001013848, intron 2 of 22)	-1965	NM_001319200	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
20171	chr1	192936521	192937350	+	0	NA	intron (NR_126003, intron 2 of 2)	intron (NR_126003, intron 2 of 2)	11322	NR_126003	102724954		NR_126003		RGS2-AS1	LINC01032	RSG2 antisense RNA 1	ncRNA
162199	chr3	47007651	47007750	+	0	NA	intron (NM_001365116, intron 47 of 52)	intron (NM_001365116, intron 47 of 52)	-3842	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
222093	chr8	130441501	130441700	+	0	NA	intron (NM_001362924, intron 1 of 30)	intron (NM_001362924, intron 1 of 30)	2060	NM_001362924	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
155341	chr22	38228301	38228500	+	0	NA	intron (NM_001195071, intron 5 of 8)	MIR|SINE|MIR	-3680	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
78535	chr15	92957121	92957500	+	0	NA	intron (NM_001271, intron 16 of 38)	L2b|LINE|L2	52911	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
166203	chr3	111882621	111882880	+	0	NA	intron (NM_001134439, intron 1 of 17)	intron (NM_001134439, intron 1 of 17)	22923	NM_001134439	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
193908	chr6	31628371	31628730	+	0	NA	intron (NM_004638, intron 12 of 30).7	AluJo|SINE|Alu	-5237	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
235555	chrX	47250221	47250850	+	0	NA	Intergenic	AluY|SINE|Alu	17526	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
63653	chr14	20988871	20989030	+	0	NA	Intergenic	Intergenic	-1030	NM_001029991	64745		NM_022734	ENSG00000165792	METTL17	METT11D1	methyltransferase like 17	protein-coding
145340	chr20	41133701	41134400	+	0	NA	intron (NR_109889, intron 3 of 6)	intron (NR_109889, intron 3 of 6)	-3493	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
19380	chr1	174009071	174009430	+	0	NA	intron (NM_172071, intron 1 of 19)	intron (NM_172071, intron 1 of 19)	13107	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
119966	chr19	41893171	41893330	+	0	NA	intron (NM_004706, intron 7 of 28)	intron (NM_004706, intron 7 of 28)	8807	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
52870	chr12	57175701	57176100	+	0	NA	intron (NM_002332, intron 23 of 88)	intron (NM_002332, intron 23 of 88)	-18604	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
145875	chr20	45942171	45942330	+	0	NA	intron (NM_022104, intron 7 of 16)	AluSc|SINE|Alu	7567	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
69022	chr14	91573871	91574850	+	0	NA	Intergenic	CpG	-63806	NR_169193	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
201625	chr6	149445321	149445850	+	0	NA	Intergenic	Intergenic	39429	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
57886	chr12	123432521	123433850	+	0	NA	intron (NM_145058, intron 1 of 3)	AluSc|SINE|Alu	3548	NR_130703	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
208428	chr7	66769971	66770500	+	0	NA	intron (NM_001367724, intron 2 of 8)	intron (NM_001367724, intron 2 of 8)	14353	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
3982	chr1	18904271	18905250	+	0	NA	3' UTR (NM_001136265, exon 9 of 9)	3' UTR (NM_001136265, exon 9 of 9)	-1961	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
162042	chr3	46700671	46700830	+	0	NA	promoter-TSS (NM_147196)	promoter-TSS (NM_147196)	-642	NM_147196	259236		NM_147196	ENSG00000181585	TMIE	DFNB6	transmembrane inner ear	protein-coding
81687	chr16	11223271	11223430	+	0	NA	Intergenic	L1MB5|LINE|L1	32832	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
20878	chr1	202136701	202137230	+	0	NA	intron (NM_001256129, intron 3 of 5)	AluY|SINE|Alu	7772	NM_138795	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
239497	chrY	56756871	56757250	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-197195	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
218194	chr8	42002221	42002650	+	0	NA	intron (NM_001305878, intron 2 of 13)	AluSz6|SINE|Alu	-49315	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
109499	chr19	826771	827350	+	0	NA	promoter-TSS (NM_001700)	promoter-TSS (NM_001700)	-777	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
167373	chr3	128788701	128790500	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSz|SINE|Alu	-57208	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
144336	chr20	34990821	34991750	+	0	NA	promoter-TSS (NR_039912)	promoter-TSS (NR_039912)	-813	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
235389	chrX	45068571	45069150	+	0	NA	intron (NM_001291416, intron 16 of 28)	(CTTTCT)n|Simple_repeat|Simple_repeat	132016	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
105387	chr17	82715271	82715430	+	0	NA	intron (NR_136400, intron 1 of 1)	AluSq2|SINE|Alu	903	NR_136400	101929552		NR_136400	ENSG00000263063	LOC101929552	-	uncharacterized LOC101929552	ncRNA
4221	chr1	19468021	19468870	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	15850	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
170271	chr3	184296701	184297100	+	0	NA	Intergenic	AluSz|SINE|Alu	-2341	NM_002808	5708		NM_002808	ENSG00000175166	PSMD2	P97|RPN1|S2|TRAP2	proteasome 26S subunit ubiquitin receptor, non-ATPase 2	protein-coding
98401	chr17	46577851	46578380	+	0	NA	intron (NM_001039083, intron 1 of 3).2	intron (NM_001039083, intron 1 of 3).2	1576	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
51940	chr12	53737951	53738050	+	0	NA	Intergenic	Intergenic	-10548	NM_001143682	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
98895	chr17	48584271	48584430	+	0	NA	intron (NM_001384749, intron 1 of 4)	intron (NM_001384749, intron 1 of 4)	-1971	NM_001330322	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
229253	chr9	116686651	116687930	+	0	NA	promoter-TSS (NM_012210)	promoter-TSS (NM_012210)	-15	NM_001379048	22954		NM_012210	ENSG00000119401	TRIM32	BBS11|HT2A|LGMD2H|LGMDR8|TATIP	tripartite motif containing 32	protein-coding
31113	chr10	89330921	89331350	+	0	NA	intron (NM_001549, intron 1 of 1)	LTR24B|LTR|ERV1	-1394	NM_001031683	3437		NM_001549	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41	interferon induced protein with tetratricopeptide repeats 3	protein-coding
130091	chr2	74509001	74509200	+	0	NA	Intergenic	L1MA10|LINE|L1	-1405	NM_032673	84759		NM_032673	ENSG00000115289	PCGF1	2010002K04Rik|NSPC1|RNF3A-2|RNF68	polycomb group ring finger 1	protein-coding
3868	chr1	16976451	16977500	+	0	NA	intron (NM_001135248, intron 3 of 8)	intron (NM_001135248, intron 3 of 8)	3645	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
40358	chr11	63975901	63976230	+	0	NA	intron (NM_004074, intron 1 of 1)	intron (NM_004074, intron 1 of 1)	1445	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
11055	chr1	85026721	85028040	+	0	NA	intron (NM_001253693, intron 6 of 11)	MIR|SINE|MIR	21120	NM_018298	55283		NM_018298	ENSG00000055732	MCOLN3	TRP-ML3|TRPML3	mucolipin TRP cation channel 3	protein-coding
1794	chr1	6156421	6156680	+	0	NA	intron (NM_015557, intron 3 of 41)	AluSz|SINE|Alu	23771	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
126492	chr2	28400971	28401700	+	0	NA	intron (NM_005253, intron 1 of 3)	MER5B|DNA|hAT-Charlie	-6663	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
205030	chr7	6510471	6510630	+	0	NA	intron (NM_001145118, intron 10 of 21)	intron (NM_001145118, intron 10 of 21)	-26398	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
115531	chr19	15451101	15451300	+	0	NA	TTS (NM_022904)	TTS (NM_022904)	-1244	NM_021241	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
141107	chr2	238494021	238494680	+	0	NA	Intergenic	Intergenic	61149	NR_037809	151171		NR_037809	ENSG00000225493	LINC01107	-	long intergenic non-protein coding RNA 1107	ncRNA
98860	chr17	48483501	48484030	+	0	NA	Intergenic	Intergenic	38932	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
49281	chr12	19682621	19682880	+	0	NA	Intergenic	Intergenic	242151	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
237699	chrX	124375001	124375300	+	0	NA	TTS (NM_014253)	TTS (NM_014253)	28587	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
107697	chr18	49490001	49490780	+	0	NA	TTS (NR_002571)	TTS (NR_002571)	539	NM_001369563	6139		NM_000985	ENSG00000265681	RPL17	L17|PD-1|RPL23|uL22	ribosomal protein L17	protein-coding
178745	chr4	153134021	153134350	+	0	NA	Intergenic	HAL1M8|LINE|L1	-17978	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
115816	chr19	16456701	16457800	+	0	NA	intron (NM_021235, intron 1 of 22)	intron (NM_021235, intron 1 of 22)	14720	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
155896	chr22	39532001	39533200	+	0	NA	intron (NM_194326, intron 1 of 3)	CpG-19088	148	NR_130151	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
7164	chr1	32247101	32247530	+	0	NA	promoter-TSS (NM_032648)	promoter-TSS (NM_032648)	93	NM_032648	84734		NM_032648	ENSG00000183615	FAM167B	C1orf90|DIORA-2	family with sequence similarity 167 member B	protein-coding
58743	chr12	132603671	132604330	+	0	NA	intron (NM_001195520, intron 5 of 5)	intron (NM_001195520, intron 5 of 5)	6582	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
182472	chr5	62341151	62341250	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	34994	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
70473	chr14	102073801	102074330	+	0	NA	Intergenic	AluY|SINE|Alu	12979	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
191879	chr6	15318521	15318780	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	69795	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
150769	chr21	43803651	43804100	+	0	NA	3' UTR (NM_003683, exon 13 of 13)	3' UTR (NM_003683, exon 13 of 13)	8692	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
222377	chr8	133657951	133658050	+	0	NA	Intergenic	Intergenic	26066	NR_134462	105375773		NR_134462	ENSG00000289906	LINC03024	-	long intergenic non-protein coding RNA 3024	ncRNA
66636	chr14	63857121	63858050	+	0	NA	intron (NM_015180, intron 1 of 114)	L1ME1|LINE|L1	4581	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
140499	chr2	233199151	233199450	+	0	NA	intron (NM_001017915, intron 25 of 26).2	AluSz|SINE|Alu	-52271	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
82490	chr16	17362451	17362930	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	108270	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
106135	chr18	9404301	9404900	+	0	NA	Intergenic	Intergenic	69827	NM_020648	57045		NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation BMP signaling modulator 1	protein-coding
89584	chr16	89273371	89273730	+	0	NA	intron (NM_013275, intron 11 of 12)	AluSc|SINE|Alu	-22578	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
155437	chr22	38461201	38462200	+	0	NA	Intergenic	CpG	-6362	NM_016657	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
128641	chr2	61414701	61414900	+	0	NA	intron (NM_014709, intron 2 of 79)	MER51A|LTR|ERV1	2577	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
102642	chr17	76029101	76030100	+	0	NA	Intergenic	Intergenic	-2294	NM_001988	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
25905	chr10	11292401	11292800	+	0	NA	intron (NM_001326330, intron 9 of 12)	intron (NM_001326330, intron 9 of 12)	52074	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70325	chr14	101833951	101834650	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	24437	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
210403	chr7	99997451	99998530	+	0	NA	intron (NR_159959, intron 1 of 3)	intron (NR_159959, intron 1 of 3)	300	NR_159959	105375423		NR_159959	ENSG00000286923	LOC105375423	-	uncharacterized LOC105375423	ncRNA
239511	chrY	56828921	56829180	+	0	NA	Intergenic	(TTCCA)n|Simple_repeat|Simple_repeat	-125205	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
38069	chr11	35187951	35188330	+	0	NA	intron (NM_001202557, intron 4 of 8)	intron (NM_001202557, intron 4 of 8)	25190	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
182565	chr5	65932821	65933280	+	0	NA	intron (NM_001253697, intron 1 of 25)	AluJr|SINE|Alu	6475	NM_001253697	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
82465	chr16	17026601	17027100	+	0	NA	Intergenic	Intergenic	-107654	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
52025	chr12	53993251	53993580	+	0	NA	Intergenic	Intergenic	1677	NR_029617	406973		NR_029617	ENSG00000207924	MIR196A2	MIRN196-2|MIRN196A2|mir-196a-2	microRNA 196a-2	ncRNA
152839	chr22	21979251	21979550	+	0	NA	intron (NM_001349847, intron 1 of 18)	L2b|LINE|L2	3387	NM_001349847	8940		NM_003935	ENSG00000100038	TOP3B	TOP3B1	DNA topoisomerase III beta	protein-coding
164140	chr3	56753151	56753750	+	0	NA	intron (NM_001289698, intron 5 of 10)	intron (NM_001289698, intron 5 of 10)	22267	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
86096	chr16	57645221	57645680	+	0	NA	intron (NM_001370454, intron 2 of 13)	intron (NM_001370454, intron 2 of 13)	5958	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
179474	chr4	184477921	184478630	+	0	NA	Intergenic	Intergenic	-3725	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
118944	chr19	38829101	38829530	+	0	NA	intron (NM_001398, intron 3 of 9).2	AluSx1|SINE|Alu	2479	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
77381	chr15	82844721	82845230	+	0	NA	Intergenic	Intergenic	35347	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
206707	chr7	36515511	36515900	+	0	NA	intron (NM_001177506, intron 20 of 21)	(AC)n|Simple_repeat|Simple_repeat	84415	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
136709	chr2	181153701	181154100	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	30063	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
142495	chr20	4720301	4721550	+	0	NA	promoter-TSS (NM_012409)	promoter-TSS (NM_012409)	-984	NM_012409	23627		NM_012409	ENSG00000171864	PRND	DOPPEL|DPL|PrPLP|dJ1068H6.4	prion like protein doppel	protein-coding
222520	chr8	140557821	140558080	+	0	NA	intron (NM_012154, intron 7 of 18)	intron (NM_012154, intron 7 of 18)	45954	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
104788	chr17	81720921	81721380	+	0	NA	TTS (NM_001270888)	TTS (NM_001270888)	8866	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
118022	chr19	34184921	34185650	+	0	NA	intron (NM_001384434, intron 1 of 9).2	intron (NM_001384434, intron 1 of 9).2	12781	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
152765	chr22	21766371	21767980	+	0	NA	intron (NM_002745, intron 8 of 8)	intron (NM_002745, intron 8 of 8)	-31381	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
157	chr1	534701	535300	+	0	NA	Intergenic	MIRb|SINE|MIR	-39555	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
10442	chr1	66250071	66250680	+	0	NA	intron (NM_001037340, intron 2 of 14)	intron (NM_001037340, intron 2 of 14)	-81733	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
180680	chr5	18789521	18789780	+	0	NA	Intergenic	L3|LINE|CR1	982376	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
179102	chr4	168514221	168514480	+	0	NA	intron (NM_001166108, intron 2 of 21)	intron (NM_001166108, intron 2 of 21)	17298	NM_001166108	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
135219	chr2	159201321	159202080	+	0	NA	intron (NM_001350064, intron 19 of 26)	intron (NM_001350064, intron 19 of 26)	14865	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
35626	chr11	1825051	1825380	+	0	NA	Intergenic	Intergenic	-9212	NM_138567	90019		NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
80853	chr16	3507171	3507730	+	0	NA	intron (NM_015041, intron 3 of 11)	AluJb|SINE|Alu	-2444	NM_024793	23059		NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
205217	chr7	7942521	7943180	+	0	NA	Intergenic	Intergenic	25902	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
174246	chr4	37973951	37974250	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	13702	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
38603	chr11	46309801	46310000	+	0	NA	intron (NM_052854, intron 3 of 11)	intron (NM_052854, intron 3 of 11)	-23026	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
162177	chr3	46993551	46994250	+	0	NA	intron (NM_015175, intron 10 of 53)	intron (NM_015175, intron 10 of 53)	5910	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
33020	chr10	110739901	110740300	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	95764	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
150835	chr21	44025521	44026100	+	0	NA	intron (NM_003274, intron 1 of 22)	intron (NM_003274, intron 1 of 22)	13501	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
180569	chr5	14705551	14705850	+	0	NA	3' UTR (NM_054027, exon 12 of 12)	3' UTR (NM_054027, exon 12 of 12)	-6994	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
24394	chr1	243019071	243019330	+	0	NA	Intergenic	Intergenic	82544	NR_029401	731275		NR_029401	ENSG00000291217	LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
224340	chr9	6779321	6779580	+	0	NA	intron (NR_148677, intron 1 of 21)	intron (NR_148677, intron 1 of 21)	21477	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
171991	chr4	949171	949330	+	0	NA	intron (NM_001297423, intron 3 of 10)	intron (NM_001297423, intron 3 of 10)	16790	NM_032326	84286		NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
65491	chr14	51876001	51876280	+	0	NA	intron (NM_001243774, intron 1 of 2)	AluJo|SINE|Alu	15528	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
224875	chr9	31393321	31393580	+	0	NA	Intergenic	L3|LINE|CR1	-11960	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
61499	chr13	52650801	52651230	+	0	NA	Intergenic	LTR32|LTR|ERVL	-1821	NM_001320831	10910		NM_006704	ENSG00000165416	SUGT1	SGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein-coding
65805	chr14	54773071	54773600	+	0	NA	intron (NM_001161577, intron 4 of 8)	intron (NM_001161577, intron 4 of 8)	18502	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
85387	chr16	50287921	50288380	+	0	NA	5' UTR (NM_001286057, exon 2 of 19)	5' UTR (NM_001286057, exon 2 of 19)	-4466	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
120158	chr19	42236351	42236850	+	0	NA	intron (NM_019884, intron 4 of 10)	intron (NM_019884, intron 4 of 10)	6002	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
14319	chr1	143876051	143876150	+	0	NA	non-coding (NR_027484, exon 3 of 6)	non-coding (NR_027484, exon 3 of 6)	1357	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
67332	chr14	69637971	69638930	+	0	NA	intron (NM_014734, intron 1 of 5)	(GT)n|Simple_repeat|Simple_repeat	26854	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
196420	chr6	43424921	43425580	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-2291	NM_001350518	89845		NM_033450	ENSG00000124574	ABCC10	EST182763|MRP7|SIMRP7	ATP binding cassette subfamily C member 10	protein-coding
40196	chr11	62928121	62928380	+	0	NA	Intergenic	Intergenic	-6887	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
227173	chr9	87311071	87311250	+	0	NA	Intergenic	Intergenic	162516	NR_161226	401535		NR_161226	ENSG00000204446	LINC02872	C9orf170	long intergenic non-protein coding RNA 2872	ncRNA
234485	chrX	18353851	18355130	+	0	NA	intron (NR_033717, intron 1 of 15)	CpG	198	NR_033717	10389		NM_006089	ENSG00000102098	SCML2	-	Scm polycomb group protein like 2	protein-coding
5851	chr1	26724701	26725280	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	28975	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
218929	chr8	60903221	60904280	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	7048	NR_168431	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
59349	chr13	24610871	24611030	+	0	NA	Intergenic	Intergenic	30742	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
167079	chr3	127002021	127002700	+	0	NA	intron (NM_032242, intron 2 of 30)	intron (NM_032242, intron 2 of 30)	13766	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
235083	chrX	40180671	40181030	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-3521	NM_001123383	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
219239	chr8	66935051	66935150	+	0	NA	Intergenic	(C)n|Simple_repeat|Simple_repeat	-9559	NR_152600	641638		NR_002599		SNHG6	HBII-276HG|NCRNA00058|U87HG	small nucleolar RNA host gene 6	ncRNA
182104	chr5	56058151	56059450	+	0	NA	Intergenic	Intergenic	63633	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
158130	chr22	50148471	50149550	+	0	NA	intron (NM_001164106, intron 1 of 8)	intron (NM_001164106, intron 1 of 8)	1955	NM_001164106	54456		NM_018995	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8|SPGF73	Mov10 like RNA helicase 1	protein-coding
238008	chrX	134908201	134908680	+	0	NA	intron (NM_001306188, intron 1 of 4)	(CCTCC)n|Simple_repeat|Simple_repeat	6817	NM_001306188	56180		NM_019556	ENSG00000101928	MOSPD1	DJ473B4	motile sperm domain containing 1	protein-coding
148131	chr20	63471751	63472050	+	0	NA	intron (NM_001382235, intron 1 of 16)	CpG	755	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
216360	chr8	17590171	17590530	+	0	NA	intron (NM_001372073, intron 2 of 5)	intron (NM_001372073, intron 2 of 5)	13134	NM_001372073	5157		NM_006207	ENSG00000104213	PDGFRL	PDGRL|PRLTS	platelet derived growth factor receptor like	protein-coding
136631	chr2	179095971	179096350	+	0	NA	Intergenic	L1MA2|LINE|L1	-46023	NM_173648	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
97807	chr17	44781271	44781630	+	0	NA	3' UTR (NM_002390, exon 27 of 27)	3' UTR (NM_002390, exon 27 of 27)	22462	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
45644	chr11	118997401	118999230	+	0	NA	exon (NM_198489, exon 1 of 11)	exon (NM_198489, exon 1 of 11)	177	NR_104050	338657		NM_198489	ENSG00000186166	CENATAC	CCDC84|DLNB14|MVA4	centrosomal AT-AC splicing factor	protein-coding
15596	chr1	150588501	150588900	+	0	NA	Intergenic	AluSp|SINE|Alu	-8962	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
105014	chr17	82037021	82038500	+	0	NA	promoter-TSS (NM_001195218)	promoter-TSS (NM_001195218)	-63	NM_001195218	51181		NM_016286	ENSG00000169738	DCXR	DCR|HCR2|HCRII|KIDCR|P34H|PNTSU|SDR20C1|XR	dicarbonyl and L-xylulose reductase	protein-coding
155868	chr22	39488371	39488530	+	0	NA	exon (NM_002409, exon 2 of 2)	exon (NM_002409, exon 2 of 2)	1226	NM_001098270	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
87755	chr16	75247401	75247600	+	0	NA	intron (NM_001170715, intron 1 of 6)	intron (NM_001170715, intron 1 of 6)	651	NM_001170719	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
93829	chr17	20852021	20852280	+	0	NA	Intergenic	Intergenic	-16377	NR_160710	440416		NR_104185	ENSG00000233098	CCDC144NL-AS1	-	CCDC144NL antisense RNA 1	ncRNA
234618	chrX	19840761	19841900	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	-8179	NM_001353895	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
52360	chr12	55645821	55647280	+	0	NA	Intergenic	CpG	9658	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
157472	chr22	45293221	45293680	+	0	NA	intron (NM_001167574, intron 3 of 3)	intron (NM_001167574, intron 3 of 3)	8501	NM_001167574	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
55243	chr12	101879851	101880150	+	0	NA	intron (NM_018370, intron 1 of 6)	AluSc|SINE|Alu	2420	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
189696	chr5	176446871	176447300	+	0	NA	Intergenic	Intergenic	-1300	NM_014613	23197		NM_014613	ENSG00000113194	FAF2	ETEA|UBXD8|UBXN3B	Fas associated factor family member 2	protein-coding
200893	chr6	139028401	139029810	+	0	NA	intron (NM_021243, intron 1 of 2)	CpG	360	NM_021243	58527		NM_021243	ENSG00000146386	ABRACL	C6orf115|Costars|HSPC280|PRO2013	ABRA C-terminal like	protein-coding
70095	chr14	100195951	100196250	+	0	NA	Intergenic	AluSz|SINE|Alu	-36455	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
36687	chr11	8685351	8686280	+	0	NA	TTS (NR_002977)	TTS (NR_002977)	376	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
46619	chr11	128613971	128614130	+	0	NA	Intergenic	Intergenic	-26492	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
20368	chr1	197927271	197927850	+	0	NA	intron (NM_020204, intron 3 of 4)	intron (NM_020204, intron 3 of 4)	10188	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
96054	chr17	39476101	39476480	+	0	NA	intron (NM_016507, intron 2 of 13)	AluSc|SINE|Alu	14804	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
188219	chr5	150742451	150742750	+	0	NA	intron (NM_001135643, intron 3 of 13)	intron (NM_001135643, intron 3 of 13)	15920	NM_001135644	51164		NM_016221	ENSG00000132912	DCTN4	DYN4|P62	dynactin subunit 4	protein-coding
209085	chr7	74848051	74848730	+	0	NA	intron (NM_173537, intron 1 of 15)	AluJr|SINE|Alu	1735	NM_001368300	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
52395	chr12	55732201	55732400	+	0	NA	Intergenic	Intergenic	-2627	NM_001257389	967		NM_001780	ENSG00000135404	CD63	AD1|HOP-26|ME491|MLA1|OMA81H|Pltgp40|TSPAN30	CD63 molecule	protein-coding
54089	chr12	76070071	76070430	+	0	NA	intron (NM_139207, intron 2 of 15)	AluSz6|SINE|Alu	14435	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
59147	chr13	21480201	21480650	+	0	NA	Intergenic	Intergenic	-21055	NM_001286638	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
198758	chr6	108592421	108593280	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	31933	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
134393	chr2	136408001	136408400	+	0	NA	Intergenic	Intergenic	-290051	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
87275	chr16	70013451	70013550	+	0	NA	intron (NR_003610, intron 14 of 25)	LTR1A2|LTR|ERV1	-16846	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
181289	chr5	39570201	39570680	+	0	NA	Intergenic	Intergenic	50009	NR_104632	101926940		NR_104632	ENSG00000271334	LINC02104	-	long intergenic non-protein coding RNA 2104	ncRNA
70060	chr14	100139521	100140000	+	0	NA	intron (NM_016337, intron 11 of 13)	intron (NM_016337, intron 11 of 13)	19885	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
14117	chr1	120935551	120935850	+	0	NA	intron (NR_109754, intron 1 of 2)	AluY|SINE|Alu	-6900	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
137018	chr2	190678501	190679200	+	0	NA	intron (NM_001321315, intron 3 of 5)	intron (NM_001321315, intron 3 of 5)	19692	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
96542	chr17	40359601	40360430	+	0	NA	TTS (NM_152219)	TTS (NM_152219)	4722	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
236265	chrX	65971121	65971430	+	0	NA	Intergenic	Intergenic	-47595	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
30433	chr10	79052071	79052650	+	0	NA	intron (NR_024429, intron 3 of 7)	intron (NR_024429, intron 3 of 7)	15088	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
191846	chr6	15246701	15247080	+	0	NA	TTS (NR_120502)	TTS (NR_120502)	821	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
237970	chrX	133984101	133984300	+	0	NA	intron (NM_001164618, intron 1 of 7)	CpG	1394	NM_004484	2719		NM_004484	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
86326	chr16	66315151	66315500	+	0	NA	Intergenic	Intergenic	-51366	NM_001795	1003		NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
184561	chr5	102767721	102768050	+	0	NA	intron (NM_001364588, intron 1 of 24)	MIR|SINE|MIR	12580	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
693	chr1	1396051	1396880	+	0	NA	intron (NM_001350497, intron 1 of 9)	AluSx|SINE|Alu	1877	NM_001350497	81669		NM_030937	ENSG00000221978	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
173971	chr4	26075921	26076580	+	0	NA	Intergenic	Intergenic	-87208	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
79507	chr16	794771	794930	+	0	NA	intron (NM_022092, intron 15 of 21)	intron (NM_022092, intron 15 of 21)	5884	NM_016541	51764		NM_016541	ENSG00000127588	GNG13	G(gamma)13|HG3J|h2-35	G protein subunit gamma 13	protein-coding
214434	chr7	149870801	149871550	+	0	NA	intron (NR_027040, intron 2 of 3)	intron (NR_027040, intron 2 of 3)	-1789	NM_001367792	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
85189	chr16	46929601	46930000	+	0	NA	3' UTR (NM_001142466, exon 12 of 12)	3' UTR (NM_001142466, exon 12 of 12)	-43326	NR_145840	109623466		NR_145840		SNORD148	-	small nucleolar RNA, C/D box 148	snoRNA
133625	chr2	126683371	126683530	+	0	NA	intron (NM_016815, intron 1 of 2)	intron (NM_016815, intron 1 of 2)	27292	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
81181	chr16	4471071	4471230	+	0	NA	intron (NM_001351995, intron 2 of 5)	intron (NM_001351995, intron 2 of 5)	3475	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
49806	chr12	31969151	31969650	+	0	NA	intron (NM_018169, intron 2 of 5)	AluJb|SINE|Alu	9985	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
50238	chr12	46240201	46240780	+	0	NA	intron (NM_001278388, intron 1 of 15)	AluSp|SINE|Alu	26026	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
74995	chr15	63938371	63938930	+	0	NA	intron (NM_014326, intron 5 of 11)	intron (NM_014326, intron 5 of 11)	10376	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
227720	chr9	93042551	93042650	+	0	NA	Intergenic	Intergenic	-16088	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
5381	chr1	25436001	25436200	+	0	NA	intron (NM_001282564, intron 1 of 8)	intron (NM_001282564, intron 1 of 8)	5203	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
60824	chr13	45386921	45387180	+	0	NA	intron (NR_024458, intron 9 of 10)	LTR12_|LTR|ERV1	-31112	NR_047031	100874259		NR_047031	ENSG00000251015	SLC25A30-AS1	-	SLC25A30 antisense RNA 1	ncRNA
22230	chr1	212597401	212597600	+	0	NA	intron (NM_001030287, intron 1 of 3)	(ATCT)n|Simple_repeat|Simple_repeat	-11261	NM_001674	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
187839	chr5	146919321	146919580	+	0	NA	promoter-TSS (NR_047115)	promoter-TSS (NR_047115)	56	NR_047115	100874361		NR_047115	ENSG00000249553	PPP2R2B-IT1	-	PPP2R2B intronic transcript 1	ncRNA
126985	chr2	36597401	36598500	+	0	NA	exon (NM_001042548, exon 1 of 9)	exon (NM_001042548, exon 1 of 9)	218	NM_005102	9637		NM_005102	ENSG00000171055	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2	protein-coding
5466	chr1	25631921	25632800	+	0	NA	intron (NM_020379, intron 1 of 11)	L1PB3|LINE|L1	15569	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
157565	chr22	45892301	45892500	+	0	NA	Intergenic	Intergenic	84762	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
195984	chr6	41976201	41976400	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx|SINE|Alu	-34452	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
20677	chr1	200437821	200438230	+	0	NA	Intergenic	L3|LINE|CR1	-27989	NM_001281293	23528		NM_012482	ENSG00000162702	ZNF281	GZP1|ZBP-99|ZBP99|ZNP-99	zinc finger protein 281	protein-coding
81888	chr16	11690251	11690550	+	0	NA	intron (NR_136674, intron 5 of 8)	intron (NR_136674, intron 5 of 8)	21945	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
50989	chr12	49627601	49628000	+	0	NA	intron (NM_012272, intron 1 of 24)	L2b|LINE|L2	4239	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
4130	chr1	19328471	19328980	+	0	NA	non-coding (NR_109848, exon 9 of 10)	non-coding (NR_109848, exon 9 of 10)	16399	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
13371	chr1	113904271	113906200	+	0	NA	promoter-TSS (NM_001319946)	promoter-TSS (NM_001319946)	-91	NM_001363691	64858		NM_022836	ENSG00000118655	DCLRE1B	APOLLO|DKCB8|SNM1B|SNMIB	DNA cross-link repair 1B	protein-coding
189940	chr5	177397921	177398180	+	0	NA	exon (NM_003052, exon 13 of 13)	exon (NM_003052, exon 13 of 13)	2611	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
27033	chr10	26863071	26863430	+	0	NA	Intergenic	AluJb|SINE|Alu	-2163	NM_001178124	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
91650	chr17	5485801	5487250	+	0	NA	promoter-TSS (NM_001304777)	promoter-TSS (NM_001304777)	-41	NM_001258217	79003		NM_024039	ENSG00000167842	MIS12	2510025F08Rik|KNTC2AP|MTW1|hMis12	MIS12 kinetochore complex component	protein-coding
74960	chr15	63821201	63822200	+	0	NA	intron (NM_003922, intron 1 of 77)	AluJb|SINE|Alu	12248	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
98529	chr17	47650401	47651550	+	0	NA	promoter-TSS (NM_001276453)	promoter-TSS (NM_001276453)	-90	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
119809	chr19	41341001	41341530	+	0	NA	intron (NM_000660, intron 5 of 6)	AluSc8|SINE|Alu	12657	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
829	chr1	1573151	1573450	+	0	NA	intron (NM_014188, intron 1 of 4)	AluSc8|SINE|Alu	1563	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
165278	chr3	75619451	75619750	+	0	NA	Intergenic	CpG	-11163	NR_031714	100302212		NR_031714	ENSG00000283894	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
216736	chr8	22450921	22451530	+	0	NA	intron (NM_005605, intron 1 of 13)	AluSx|SINE|Alu	10147	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
35448	chr11	1453101	1454230	+	0	NA	intron (NM_001256630, intron 15 of 19)	intron (NM_001256630, intron 15 of 19)	27221	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
26546	chr10	21550721	21551180	+	0	NA	intron (NM_001195626, intron 3 of 22)	AluSg|SINE|Alu	16718	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
202118	chr6	154773321	154774180	+	0	NA	intron (NM_001286189, intron 3 of 21)	L1MB7|LINE|L1	40334	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
13902	chr1	119743971	119744330	+	0	NA	TTS (NM_006623)	TTS (NM_006623)	24755	NM_005518	3158		NM_005518	ENSG00000134240	HMGCS2	-	3-hydroxy-3-methylglutaryl-CoA synthase 2	protein-coding
16210	chr1	153881921	153882180	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	40922	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
29116	chr10	68346671	68346830	+	0	NA	intron (NM_001330103, intron 16 of 17)	intron (NM_001330103, intron 16 of 17)	-13822	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
156943	chr22	42327221	42327750	+	0	NA	Intergenic	Intergenic	41723	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
173308	chr4	7215871	7216050	+	0	NA	intron (NM_020777, intron 1 of 26)	LTR12C|LTR|ERV1	23422	NM_020777	57537		NM_020777	ENSG00000184985	SORCS2	-	sortilin related VPS10 domain containing receptor 2	protein-coding
144760	chr20	36613671	36613830	+	0	NA	3' UTR (NM_032214, exon 8 of 8)	3' UTR (NM_032214, exon 8 of 8)	7971	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
104294	chr17	80871401	80872100	+	0	NA	intron (NM_001163034, intron 13 of 29)	intron (NM_001163034, intron 13 of 29)	-66118	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
114410	chr19	12649051	12649800	+	0	NA	exon (NM_000528, exon 19 of 24)	exon (NM_000528, exon 19 of 24)	17317	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
154490	chr22	35653851	35654300	+	0	NA	intron (NM_030641, intron 1 of 2)	MER21C|LTR|ERVL	5629	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
208872	chr7	73737721	73739750	+	0	NA	exon (NM_148912, exon 1 of 6)	exon (NM_148912, exon 1 of 6)	132	NM_001321383	83451		NM_148912	ENSG00000106077	ABHD11	PP1226|WBSCR21	abhydrolase domain containing 11	protein-coding
84352	chr16	30208801	30209480	+	0	NA	Intergenic	Intergenic	-2213	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
222871	chr8	142742151	142742450	+	0	NA	intron (NM_020427, intron 1 of 2)	intron (NM_020427, intron 1 of 2)	106	NM_020427	57152		NM_020427	ENSG00000126233	SLURP1	ANUP|ARS|ArsB|LY6-MT|LY6LS|MDM	secreted LY6/PLAUR domain containing 1	protein-coding
93595	chr17	19131001	19131580	+	0	NA	intron (NM_001129778, intron 1 of 3)	intron (NM_001129778, intron 1 of 3)	3701	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
234992	chrX	39765951	39766780	+	0	NA	Intergenic	Intergenic	-71196	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
32504	chr10	102748701	102749100	+	0	NA	intron (NM_001083913, intron 1 of 3)	L2c|LINE|L2	4952	NM_001083913	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
101463	chr17	67462951	67464080	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-7974	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
64735	chr14	34542401	34542600	+	0	NA	Intergenic	AluY|SINE|Alu	-2763	NM_001318916	55837		NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding
219167	chr8	66512201	66512400	+	0	NA	intron (NM_152765, intron 4 of 5)	intron (NM_152765, intron 4 of 5)	18734	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
144491	chr20	35657251	35657930	+	0	NA	intron (NM_001198840, intron 1 of 1)	intron (NM_001198840, intron 1 of 1)	-3681	NM_003915	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
238464	chrX	153072051	153072630	+	0	NA	promoter-TSS (NM_032882)	promoter-TSS (NM_032882)	-114	NM_032882	84968		NM_032882	ENSG00000235961	PNMA6A	MA6|PNMA6|PNMA6C	PNMA family member 6A	protein-coding
167046	chr3	126679001	126679600	+	0	NA	Intergenic	CpG	17219	NR_034158	255330		NM_174935	ENSG00000293201	NUP210P1	C3orf46	nucleoporin 210 pseudogene 1	pseudo
154761	chr22	36512701	36512900	+	0	NA	intron (NR_156418, intron 12 of 14)	intron (NR_156418, intron 12 of 14)	-5760	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
87622	chr16	74389771	74390130	+	0	NA	intron (NM_001306094, intron 5 of 6)	intron (NM_001306094, intron 5 of 6)	11998	NM_001306094	440348		NM_001018059	ENSG00000196436	NPIPB15	A-761H5.4|NPIPL2	nuclear pore complex interacting protein family member B15	protein-coding
187765	chr5	144351421	144351500	+	0	NA	intron (NM_001370486, intron 2 of 2)	L1MA8|LINE|L1	146069	NM_001370486	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
90631	chr17	1654671	1655380	+	0	NA	intron (NM_006445, intron 37 of 42)	AluSz|SINE|Alu	-5159	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
193899	chr6	31617951	31618780	+	0	NA	Intergenic	Intergenic	-2350	NM_004638	7916		NM_004638	ENSG00000204469	PRRC2A	BAT2|D6S51|D6S51E|G2	proline rich coiled-coil 2A	protein-coding
93560	chr17	19077401	19077680	+	0	NA	Intergenic	Intergenic	-11903	NR_164158	102724624		NR_164158		LOC102724624	-	uncharacterized protein ENSP00000382042-like	ncRNA
20924	chr1	202194771	202195130	+	0	NA	intron (NM_001017403, intron 1 of 17)	intron (NM_001017403, intron 1 of 17)	960	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
75304	chr15	65275021	65275680	+	0	NA	intron (NM_017851, intron 1 of 5)	intron (NM_017851, intron 1 of 5)	10241	NR_145768	109617003		NR_145768	ENSG00000206903	SNORA24B	-	small nucleolar RNA, H/ACA box 24B	snoRNA
183051	chr5	73443751	73443930	+	0	NA	Intergenic	Intergenic	4937	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
182	chr1	670071	670230	+	0	NA	Intergenic	L1MEd|LINE|L1	16504	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
163405	chr3	50536951	50537250	+	0	NA	Intergenic	Intergenic	30647	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
33365	chr10	117247221	117247480	+	0	NA	intron (NM_003054, intron 3 of 15)	MIR3|SINE|MIR	6236	NM_003054	6571		NM_003054	ENSG00000165646	SLC18A2	PKDYS2|SVAT|SVMT|VAT2|VMAT2	solute carrier family 18 member A2	protein-coding
99112	chr17	49212051	49212900	+	0	NA	intron (NM_001135186, intron 1 of 7)	intron (NM_001135186, intron 1 of 7)	1768	NM_016428	51225		NM_016428	ENSG00000108798	ABI3	NESH|SSH3BP3	ABI family member 3	protein-coding
144517	chr20	35701251	35702050	+	0	NA	TTS (NM_080748)	TTS (NM_080748)	2245	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
134142	chr2	134182601	134182800	+	0	NA	intron (NM_001371457, intron 1 of 16)	L1ME3A|LINE|L1	55575	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
172020	chr4	986571	988100	+	0	NA	TTS (NM_213613)	TTS (NM_213613)	291	NM_000203	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
56517	chr12	116558251	116558550	+	0	NA	promoter-TSS (NM_001085481)	promoter-TSS (NM_001085481)	-981	NM_001085481	643246		NM_001085481	ENSG00000258102	MAP1LC3B2	ATG8G	microtubule associated protein 1 light chain 3 beta 2	protein-coding
196952	chr6	52670751	52671980	+	0	NA	intron (NM_014051, intron 1 of 4)	intron (NM_014051, intron 1 of 4)	252	NM_014051	28978		NM_014051	ENSG00000096092	TMEM14A	C6orf73|PTD011	transmembrane protein 14A	protein-coding
105881	chr18	3254921	3255230	+	0	NA	TTS (NR_130144)	TTS (NR_130144)	2862	NM_001303049	10627		NM_006471	ENSG00000101608	MYL12A	HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B	myosin light chain 12A	protein-coding
189668	chr5	176386571	176387100	+	0	NA	intron (NR_134318, intron 3 of 5)	intron (NR_134318, intron 3 of 5)	1763	NM_001256540	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
139206	chr2	219274151	219274450	+	0	NA	Intergenic	Intergenic	-5066	NM_001039550	3300		NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HMNR5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
103121	chr17	77379301	77379930	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	3532	NM_001113494	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
174279	chr4	38309001	38309300	+	0	NA	Intergenic	L1MC5|LINE|L1	-57764	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
142213	chr20	3048671	3049230	+	0	NA	TTS (NM_030811)	TTS (NM_030811)	2898	NM_030811	64949		NM_030811	ENSG00000125901	MRPS26	C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3|mS26	mitochondrial ribosomal protein S26	protein-coding
33390	chr10	117618571	117618730	+	0	NA	Intergenic	MER41A|LTR|ERV1	-73582	NR_002791	196047		NR_002791	ENSG00000229847	EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
157104	chr22	42636551	42637050	+	0	NA	exon (NM_001171660, exon 2 of 9)	exon (NM_001171660, exon 2 of 9)	3801	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
41383	chr11	65999321	65999580	+	0	NA	intron (NM_001242481, intron 4 of 5)	intron (NM_001242481, intron 4 of 5)	-2629	NM_001143985	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
216113	chr8	11280571	11281030	+	0	NA	Intergenic	AluSg|SINE|Alu	-4016	NM_015458	66036		NM_015458	ENSG00000104643	MTMR9	C8orf9|LIP-STYX|MTMR8	myotubularin related protein 9	protein-coding
134099	chr2	132231751	132231850	+	0	NA	intron (NR_152415, intron 1 of 5)	L1PA3|LINE|L1	25280	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B|mir-663b	microRNA 663b	ncRNA
204097	chr7	2116801	2117580	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-28138	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
142982	chr20	20060601	20060980	+	0	NA	intron (NM_001167816, intron 1 of 12)	MLT1H1|LTR|ERVL-MaLR	4144	NM_001167816	26074		NM_015585	ENSG00000089101	CFAP61	C20orf26|CaM-IP3|SPGF84|dJ1002M8.3|dJ1178H5.4	cilia and flagella associated protein 61	protein-coding
232481	chr9	136245201	136246550	+	0	NA	promoter-TSS (NM_181701)	promoter-TSS (NM_181701)	-63	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
196602	chr6	44234101	44234850	+	0	NA	TTS (NM_001078175)	TTS (NM_001078175)	10880	NM_001372327	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
24024	chr1	235270421	235271900	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJr|SINE|Alu	-56056	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
102422	chr17	75634901	75635100	+	0	NA	intron (NM_001162995, intron 1 of 2)	intron (NM_001162995, intron 1 of 2)	1566	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
128421	chr2	55284821	55285280	+	0	NA	TTS (NR_027258)	TTS (NR_027258)	2731	NR_027258	344405		NM_001080459	ENSG00000293422	PRORSD1P	NCRNA00117|PRDXDD1P|Prdxdd1|ProX|ProXp-ala|Ybakd1	prolyl-tRNA synthetase associated domain containing 1, pseudogene	pseudo
9054	chr1	44816101	44816950	+	0	NA	Intergenic	Intergenic	8043	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
46046	chr11	122695871	122696030	+	0	NA	intron (NM_032873, intron 1 of 13)	AluSx1|SINE|Alu	40228	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
112705	chr19	7107251	7107750	+	0	NA	Intergenic	(ATGATG)n|Simple_repeat|Simple_repeat	37797	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
173537	chr4	10074721	10075300	+	0	NA	3' UTR (NM_005112, exon 12 of 12)	3' UTR (NM_005112, exon 12 of 12)	3682	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
189902	chr5	177353621	177354080	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2182	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
211585	chr7	105760401	105761100	+	0	NA	3' UTR (NM_152749, exon 4 of 4)	3' UTR (NM_152749, exon 4 of 4)	-81588	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
8873	chr1	43538971	43539330	+	0	NA	intron (NM_001329139, intron 2 of 32)	intron (NM_001329139, intron 2 of 32)	8267	NM_002840	5792		NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase receptor type F	protein-coding
38559	chr11	45927221	45928280	+	0	NA	intron (NM_001300722, intron 12 of 14)	intron (NM_001300722, intron 12 of 14)	5094	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
233182	chr9	137195301	137195500	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	5341	NM_001128228	286262		NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79	taperin	protein-coding
47533	chr12	4270401	4271100	+	0	NA	intron (NR_149145, intron 1 of 3)	CpG	-3012	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
31620	chr10	97378001	97378500	+	0	NA	intron (NM_015179, intron 15 of 33)	Tigger3a|DNA|TcMar-Tigger	23090	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
155780	chr22	39250101	39250300	+	0	NA	Intergenic	Intergenic	-5218	NM_002608	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
145781	chr20	45370501	45370900	+	0	NA	intron (NR_003189, intron 3 of 5)	intron (NR_003189, intron 3 of 5)	7531	NR_003189	767557		NR_003189	ENSG00000254806	SYS1-DBNDD2	C20orf169-DBNDD2	SYS1-DBNDD2 readthrough (NMD candidate)	ncRNA
117932	chr19	33132651	33132950	+	0	NA	intron (NM_173479, intron 1 of 10)	intron (NM_173479, intron 1 of 10)	686	NM_173479	126248		NM_173479	ENSG00000166359	WDR88	PQWD	WD repeat domain 88	protein-coding
51297	chr12	51245151	51245700	+	0	NA	TTS (NM_001033873)	TTS (NM_001033873)	6599	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
235822	chrX	49272251	49272650	+	0	NA	intron (NM_033215, intron 1 of 3)	MIR|SINE|MIR	2657	NM_033215	89801		NM_033215	ENSG00000049769	PPP1R3F	HB2E|LL0XNC01-7P3.1|R3F	protein phosphatase 1 regulatory subunit 3F	protein-coding
181191	chr5	39142601	39143000	+	0	NA	intron (NM_199335, intron 3 of 17)	L2c|LINE|L2	-68401	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
146237	chr20	48821501	48822230	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	6134	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
19686	chr1	181021601	181022200	+	0	NA	intron (NM_005819, intron 1 of 7)	intron (NM_005819, intron 1 of 7)	970	NM_005819	10228		NM_005819	ENSG00000135823	STX6	-	syntaxin 6	protein-coding
189652	chr5	176235121	176235700	+	0	NA	Intergenic	L2|LINE|L2	-2949	NM_001308196	375484		NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1|PLEIAD	SUMO interacting motifs containing 1	protein-coding
163263	chr3	50296151	50296330	+	0	NA	TTS (NM_012191)	TTS (NM_012191)	2620	NM_001200018	24142		NM_012191	ENSG00000243477	NAA80	FUS-2|FUS2|HsNAAA80|NAT6	N-alpha-acetyltransferase 80, NatH catalytic subunit	protein-coding
196968	chr6	53048271	53049030	+	0	NA	intron (NM_001375400, intron 1 of 14)	intron (NM_001375400, intron 1 of 14)	13174	NM_001375398	22858		NM_014920	ENSG00000112144	CILK1	ECO|EJM10|ICK|LCK2|MRK|hICK	ciliogenesis associated kinase 1	protein-coding
42440	chr11	69299451	69299850	+	0	NA	Intergenic	L2b|LINE|L2	5495	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
2549	chr1	9732371	9733080	+	0	NA	intron (NM_014944, intron 15 of 17)	intron (NM_014944, intron 15 of 17)	41258	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
212137	chr7	116511501	116512500	+	0	NA	Intergenic	Intergenic	11954	NM_001206748	858		NM_001233	ENSG00000105971	CAV2	CAV	caveolin 2	protein-coding
218515	chr8	53524671	53524900	+	0	NA	promoter-TSS (NR_149032)	promoter-TSS (NR_149032)	-820	NR_149032	100507516		NR_149032	ENSG00000237807	LINC02984	-	long intergenic non-protein coding RNA 2984	ncRNA
25917	chr10	11313921	11314380	+	0	NA	exon (NM_001326324, exon 11 of 15)	exon (NM_001326324, exon 11 of 15)	30524	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
172753	chr4	2848501	2848950	+	0	NA	intron (NM_001286645, intron 1 of 17)	AluJr|SINE|Alu	4575	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
83439	chr16	27306001	27306200	+	0	NA	Intergenic	Intergenic	-7874	NM_001257406	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
172904	chr4	3487121	3487480	+	0	NA	intron (NM_001256896, intron 2 of 3)	intron (NM_001256896, intron 2 of 3)	2756	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
182638	chr5	67100321	67100580	+	0	NA	exon (NM_001290226, exon 6 of 27)	exon (NM_001290226, exon 6 of 27)	95795	NM_001290227	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
17841	chr1	159914501	159915050	+	0	NA	Intergenic	L2a|LINE|L2	8959	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
101205	chr17	65547171	65547530	+	0	NA	intron (NM_004655, intron 3 of 10)	intron (NM_004655, intron 3 of 10)	14298	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
5759	chr1	26482771	26482930	+	0	NA	Intergenic	L1MB7|LINE|L1	10410	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
230360	chr9	128062951	128063050	+	0	NA	3' UTR (NM_197956, exon 2 of 2)	3' UTR (NM_197956, exon 2 of 2)	4320	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
110631	chr19	2223701	2224700	+	0	NA	intron (NM_032482, intron 25 of 27)	intron (NM_032482, intron 25 of 27)	9949	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
151893	chr22	18896221	18896930	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-2144	NR_136571	100996432		NR_136571		FAM230F	LINC01663	family with sequence similarity 230 member F	ncRNA
11565	chr1	91499471	91499830	+	0	NA	Intergenic	L2|LINE|L2	-1197	NM_001134419	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
111813	chr19	4474671	4475130	+	0	NA	intron (NM_001348169, intron 1 of 15)	intron (NM_001348169, intron 1 of 15)	946	NM_001348169	84717		NM_032631	ENSG00000167674	HDGFL2	HDGF-2|HDGF2|HDGFRP2|HRP-2|HRP2	HDGF like 2	protein-coding
172654	chr4	2603371	2603530	+	0	NA	intron (NM_001366318, intron 2 of 20)	AluSp|SINE|Alu	-21982	NM_003704	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
17148	chr1	156195171	156196000	+	0	NA	intron (NR_104412, intron 1 of 1)	intron (NR_104412, intron 1 of 1)	1481	NM_001286184	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
62208	chr13	98454751	98454850	+	0	NA	3' UTR (NM_005766, exon 27 of 27)	3' UTR (NM_005766, exon 27 of 27)	67325	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
32137	chr10	101249571	101249730	+	0	NA	Intergenic	Intergenic	13900	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
104860	chr17	81849751	81850050	+	0	NA	intron (NM_000918, intron 4 of 10)	AluSq2|SINE|Alu	10635	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
227359	chr9	89477301	89478900	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	1790	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
171728	chr3	197951721	197952200	+	0	NA	intron (NM_000996, intron 3 of 4)	intron (NM_000996, intron 3 of 4)	1770	NM_001316311	6165		NM_000996	ENSG00000182899	RPL35A	DBA5|L35A|eL33	ribosomal protein L35a	protein-coding
36024	chr11	2916871	2917030	+	0	NA	intron (NM_183233, intron 6 of 10)	intron (NM_183233, intron 6 of 10)	12470	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
217039	chr8	23256251	23257150	+	0	NA	intron (NM_001363183, intron 4 of 8)	intron (NM_001363183, intron 4 of 8)	10059	NM_001317899	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
118883	chr19	38678401	38678930	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	31016	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
120934	chr19	45668601	45669850	+	0	NA	intron (NM_000164, intron 1 of 13)	intron (NM_000164, intron 1 of 13)	1004	NM_000164	2696		NM_000164	ENSG00000010310	GIPR	PGQTL2	gastric inhibitory polypeptide receptor	protein-coding
11590	chr1	91560071	91561250	+	0	NA	Intergenic	AluJb|SINE|Alu	59552	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
169279	chr3	158102501	158102700	+	0	NA	intron (NM_003030, intron 3 of 5)	intron (NM_003030, intron 3 of 5)	3563	NM_006884	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
115808	chr19	16435621	16436280	+	0	NA	intron (NM_021235, intron 6 of 22)	intron (NM_021235, intron 6 of 22)	36020	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
143523	chr20	31550001	31550880	+	0	NA	intron (NM_178580, intron 7 of 12)	intron (NM_178580, intron 7 of 12)	22823	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
78268	chr15	90852301	90853230	+	0	NA	Intergenic	Intergenic	-15823	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
79134	chr16	226951	227730	+	0	NA	5' UTR (NM_001330420, exon 2 of 10)	5' UTR (NM_001330420, exon 2 of 10)	2109	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
7304	chr1	32464721	32465580	+	0	NA	promoter-TSS (NM_001145720)	promoter-TSS (NM_001145720)	78	NM_001145720	728116		NM_001145720	ENSG00000273274	ZBTB8B	ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
44524	chr11	107799151	107799650	+	0	NA	intron (NM_017515, intron 7 of 7)	intron (NM_017515, intron 7 of 7)	59387	NM_017515	54733		NM_017515	ENSG00000110660	SLC35F2	HSNOV1	solute carrier family 35 member F2	protein-coding
97815	chr17	44849651	44850400	+	0	NA	TTS (NM_001142605)	TTS (NM_001142605)	2142	NM_016438	51751		NM_016438	ENSG00000131097	HIGD1B	CLST11240|CLST11240-15	HIG1 hypoxia inducible domain family member 1B	protein-coding
13655	chr1	116545401	116545800	+	0	NA	intron (NR_026665, intron 1 of 5)	L2|LINE|L2	14511	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
85694	chr16	56516421	56516680	+	0	NA	intron (NR_165297, intron 1 of 16)	AluSx|SINE|Alu	3474	NR_165297	583		NM_031885	ENSG00000125124	BBS2	BBS|RP74	Bardet-Biedl syndrome 2	protein-coding
213851	chr7	142131321	142131780	+	0	NA	exon (NM_001293626, exon 5 of 48)	exon (NM_001293626, exon 5 of 48)	19832	NM_001293626	93432		NM_001008748	ENSG00000257743	MGAM2	-	maltase-glucoamylase 2 (putative)	protein-coding
195221	chr6	36139371	36140000	+	0	NA	non-coding (NR_072996, exon 10 of 10)	non-coding (NR_072996, exon 10 of 10)	9172	NM_002754	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
146010	chr20	46681101	46682230	+	0	NA	intron (NM_001193340, intron 1 of 12)	MSTC|LTR|ERVL-MaLR	2820	NM_001193340	64849		NM_022829	ENSG00000158296	SLC13A3	ARLIAK|NADC3|NaC3|SDCT2	solute carrier family 13 member 3	protein-coding
223804	chr8	144791371	144793930	+	0	NA	promoter-TSS (NM_001317782)	promoter-TSS (NM_001317782)	-260	NM_001317771	6132		NM_000973	ENSG00000161016	RPL8	L8|uL2	ribosomal protein L8	protein-coding
55946	chr12	109993321	109993580	+	0	NA	intron (NM_139201, intron 1 of 14)	MIR|SINE|MIR	2918	NM_014776	9815		NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
196640	chr6	44279521	44279900	+	0	NA	TTS (NM_001137560)	TTS (NM_001137560)	9260	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
24687	chr1	247207921	247208400	+	0	NA	Intergenic	Intergenic	-6100	NR_037480	100500849		NR_037480	ENSG00000283881	MIR3916	mir-3916	microRNA 3916	ncRNA
238016	chrX	135032051	135032900	+	0	NA	exon (NM_001078171, exon 1 of 1)	exon (NM_001078171, exon 1 of 1)	120	NM_001078171	8933		NM_003928	ENSG00000134590	RTL8C	CXX1|FAM127A|MAR8C|MART8C|Mar8|Mart8|SIRH5	retrotransposon Gag like 8C	protein-coding
54979	chr12	96327321	96327830	+	0	NA	intron (NM_002595, intron 2 of 16)	AluJb|SINE|Alu	72077	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
234956	chrX	38879621	38880080	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-75967	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
65034	chr14	39176951	39177700	+	0	NA	intron (NM_002687, intron 3 of 8)	AluJb|SINE|Alu	2071	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
176223	chr4	84581701	84581900	+	0	NA	Intergenic	Intergenic	-1327	NM_001263	1040		NM_001263	ENSG00000163624	CDS1	CDS 1	CDP-diacylglycerol synthase 1	protein-coding
120078	chr19	42087401	42087950	+	0	NA	3' UTR (NM_002698, exon 14 of 14)	3' UTR (NM_002698, exon 14 of 14)	11509	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
166749	chr3	122067901	122068100	+	0	NA	intron (NM_001206925, intron 1 of 5)	intron (NM_001206925, intron 1 of 5)	-9849	NM_006889	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
116091	chr19	17265851	17265950	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1155	NM_001321417	83878		NM_031941	ENSG00000130307	USHBP1	AIEBP|MCC2	USH1 protein network component harmonin binding protein 1	protein-coding
156011	chr22	39941771	39942000	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	-4932	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
220910	chr8	106704751	106705380	+	0	NA	intron (NM_181354, intron 6 of 13)	intron (NM_181354, intron 6 of 13)	-21042	NM_001198534	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
206590	chr7	35724221	35724480	+	0	NA	Intergenic	Intergenic	7913	NR_108082	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
209793	chr7	87627781	87629200	+	0	NA	promoter-TSS (NM_001134406)	promoter-TSS (NM_001134406)	92	NM_001134405	154661		NM_138290	ENSG00000105784	RUNDC3B	RPIB9|RPIP9	RUN domain containing 3B	protein-coding
217333	chr8	27580751	27580850	+	0	NA	Intergenic	L1MB7|LINE|L1	29951	NR_106902	102465508		NR_106902	ENSG00000284280	MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
231086	chr9	129777121	129777980	+	0	NA	Intergenic	Intergenic	-24508	NM_004878	9536		NM_004878	ENSG00000148344	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
227053	chr9	83976271	83976630	+	0	NA	intron (NM_031263, intron 5 of 16)	intron (NM_031263, intron 5 of 16)	3765	NM_031263	3190		NM_002140	ENSG00000165119	HNRNPK	AUKS|CSBP|HNRPK|TUNP	heterogeneous nuclear ribonucleoprotein K	protein-coding
18447	chr1	161532471	161532630	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	8010	NM_002155	3310		NM_002155	ENSG00000173110	HSPA6	HSP70B'	heat shock protein family A (Hsp70) member 6	protein-coding
134100	chr2	132255001	132255200	+	0	NA	intron (NR_152415, intron 1 of 5)	SSU-rRNA_Hsa|rRNA|rRNA	1980	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B|mir-663b	microRNA 663b	ncRNA
80146	chr16	2088801	2089380	+	0	NA	TTS (NM_021055)	TTS (NM_021055)	1194	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
167159	chr3	128063751	128064050	+	0	NA	TTS (NM_001319086)	TTS (NM_001319086)	11463	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
176347	chr4	88377171	88377600	+	0	NA	Intergenic	L2c|LINE|L2	-1467	NM_017912	55008		NM_017912	ENSG00000138642	HERC6	-	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein-coding
45662	chr11	119020101	119021430	+	0	NA	intron (NM_001318488, intron 3 of 4)	AluSx3|SINE|Alu	1999	NM_001318489	51399		NM_016146	ENSG00000196655	TRAPPC4	CGI-104|HSPC172|NEDESBA|PTD009|SBDN|SYNBINDIN|TRS23	trafficking protein particle complex subunit 4	protein-coding
234606	chrX	19801751	19802050	+	0	NA	intron (NM_001353892, intron 2 of 17)	AluSx1|SINE|Alu	-2127	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
199544	chr6	118813821	118814300	+	0	NA	non-coding (NR_165493, exon 12 of 12)	non-coding (NR_165493, exon 12 of 12)	31352	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
168582	chr3	149018501	149018700	+	0	NA	intron (NM_001184721, intron 5 of 5)	intron (NM_001184721, intron 5 of 5)	27060	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
213965	chr7	142789051	142789150	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	18130	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
137494	chr2	197149421	197149880	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-48341	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
110709	chr19	2305171	2305680	+	0	NA	intron (NM_001101391, intron 1 of 1)	intron (NM_001101391, intron 1 of 1)	2729	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
185669	chr5	131629371	131629730	+	0	NA	intron (NM_016340, intron 1 of 27)	AluJo|SINE|Alu	5679	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
236403	chrX	71154171	71154330	+	0	NA	intron (NM_181303, intron 4 of 7)	intron (NM_181303, intron 4 of 7)	9409	NM_001321276	54413		NM_018977	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
50079	chr12	44829021	44829300	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	46501	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
10464	chr1	66330201	66331170	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-1423	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
198762	chr6	108635451	108636200	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	74908	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
65817	chr14	54880771	54882550	+	0	NA	intron (NM_001024024, intron 1 of 6)	intron (NM_001024024, intron 1 of 6)	-3467	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
196996	chr6	53302301	53303250	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	25782	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
72379	chr15	31369471	31370250	+	0	NA	intron (NM_001302461, intron 1 of 1).3	HAL1ME|LINE|L1	43025	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
29459	chr10	70478601	70479350	+	0	NA	5' UTR (NM_014431, exon 1 of 20)	5' UTR (NM_014431, exon 1 of 20)	208	NM_014431	27143		NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	phosphatase domain containing paladin 1	protein-coding
90713	chr17	1865171	1865850	+	0	NA	intron (NM_001355120, intron 5 of 16)	intron (NM_001355120, intron 5 of 16)	35505	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
161512	chr3	42580171	42580930	+	0	NA	intron (NM_001201572, intron 1 of 6)	intron (NM_001201572, intron 1 of 6)	-1290	NM_016305	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
209694	chr7	82678501	82679150	+	0	NA	Intergenic	Intergenic	-234869	NM_001366867	781		NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|DEE110|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding
185580	chr5	131389571	131390430	+	0	NA	intron (NM_001038702, intron 3 of 4)	intron (NM_001038702, intron 3 of 4)	125947	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
34546	chr10	133011371	133011530	+	0	NA	Intergenic	Intergenic	45916	NR_046231	399829		NR_046231	ENSG00000240707	LINC01168	-	long intergenic non-protein coding RNA 1168	ncRNA
84221	chr16	29961251	29963600	+	0	NA	non-coding (NR_161466, exon 1 of 6)	non-coding (NR_161466, exon 1 of 6)	346	NM_001083613	124446		NM_194280	ENSG00000149932	TMEM219	IGFBP-3R|IGFBP3R	transmembrane protein 219	protein-coding
25725	chr10	9020851	9021350	+	0	NA	Intergenic	Intergenic	123111	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
58030	chr12	124435171	124435330	+	0	NA	intron (NM_001077261, intron 10 of 47)	intron (NM_001077261, intron 10 of 47)	-98008	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
35579	chr11	1693921	1694800	+	0	NA	Intergenic	CpG	-2835	NM_001012416	440023		NM_001012416	ENSG00000205864	KRTAP5-6	KRTAP5.6	keratin associated protein 5-6	protein-coding
31571	chr10	97329551	97329850	+	0	NA	Intergenic	AluSz|SINE|Alu	5029	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
162057	chr3	46829351	46830000	+	0	NA	non-coding (NR_148409, exon 3 of 3)	non-coding (NR_148409, exon 3 of 3)	4148	NR_148409	339906		NM_182702	ENSG00000293419	PRSS42P	PRSS42|TESSP2	serine protease 42, pseudogene	pseudo
208305	chr7	66096351	66096650	+	0	NA	Intergenic	AluSz|SINE|Alu	-18318	NM_001142414	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
155852	chr22	39456051	39456550	+	0	NA	promoter-TSS (NM_002409)	promoter-TSS (NM_002409)	-712	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
239388	chrY	21248521	21248800	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	137700	NM_001282471	100533178		NM_001282471		PRORY	CYorf17	PRORY Y-linked lncRNA	ncRNA
169246	chr3	157152501	157153030	+	0	NA	intron (NM_001308185, intron 4 of 10)	intron (NM_001308185, intron 4 of 10)	7382	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
61318	chr13	50366901	50367450	+	0	NA	intron (NR_109974, intron 2 of 6)	MLT1C|LTR|ERVL-MaLR	160274	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
201769	chr6	149952401	149953100	+	0	NA	Intergenic	Intergenic	10736	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
105498	chr17	83093471	83094030	+	0	NA	intron (NM_001004431, intron 3 of 3).2	intron (NM_001004431, intron 3 of 3).2	12604	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
131767	chr2	98473801	98474950	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	28365	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
164102	chr3	56616551	56616980	+	0	NA	intron (NR_148366, intron 14 of 18)	L1MB7|LINE|L1	47281	NM_015224	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
20704	chr1	200669301	200670830	+	0	NA	promoter-TSS (NM_001349802)	promoter-TSS (NM_001349802)	-67	NM_001349803	83479		NM_031306	ENSG00000118197	DDX59	OFD5|ZNHIT5	DEAD-box helicase 59	protein-coding
159735	chr3	15815571	15816180	+	0	NA	intron (NM_001349279, intron 1 of 28)	intron (NM_001349279, intron 1 of 28)	-17691	NR_146111	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
126456	chr2	28345071	28345630	+	0	NA	Intergenic	Intergenic	-34891	NR_038319	100505716		NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
41872	chr11	67234801	67235930	+	0	NA	intron (NM_012308, intron 12 of 20)	AluSp|SINE|Alu	-4649	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
107315	chr18	45009851	45009950	+	0	NA	intron (NM_001379141, intron 4 of 5)	intron (NM_001379141, intron 4 of 5)	-39734	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
98676	chr17	47852171	47852880	+	0	NA	intron (NM_199262, intron 1 of 1)	intron (NM_199262, intron 1 of 1)	-1362	NM_001258248	80320		NM_199262	ENSG00000189120	SP6	AI1K|EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
102950	chr17	76684321	76684580	+	0	NA	intron (NM_001008529, intron 3 of 4)	intron (NM_001008529, intron 3 of 4)	4213	NM_001363769	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
86737	chr16	67629821	67630080	+	0	NA	intron (NM_006565, intron 10 of 11)	AluY|SINE|Alu	-15194	NM_001317026	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
133445	chr2	119544201	119544630	+	0	NA	promoter-TSS (NR_073133)	promoter-TSS (NR_073133)	-17	NR_073133	200373		NM_001029996	ENSG00000163075	CFAP221	FAP221|PCDP1	cilia and flagella associated protein 221	protein-coding
72177	chr15	29140901	29141100	+	0	NA	intron (NM_015307, intron 5 of 10)	intron (NM_015307, intron 5 of 10)	70342	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
149184	chr21	21997551	21997650	+	0	NA	Intergenic	L1M1|LINE|L1	100859	NR_109959	101927843		NR_109959	ENSG00000233215	LINC01687	-	long intergenic non-protein coding RNA 1687	ncRNA
124754	chr2	6921321	6921780	+	0	NA	intron (NM_001349184, intron 1 of 8)	MIRb|SINE|MIR	2756	NM_001349184	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
8523	chr1	40993251	40993350	+	0	NA	intron (NR_125440, intron 7 of 17)	AluSx1|SINE|Alu	4781	NM_001301237	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
114701	chr19	13139471	13140030	+	0	NA	3' UTR (NM_052876, exon 6 of 6)	3' UTR (NM_052876, exon 6 of 6)	10625	NM_003765	8677		NM_003765	ENSG00000104915	STX10	SYN10|hsyn10	syntaxin 10	protein-coding
232898	chr9	136853071	136853230	+	0	NA	exon (NM_206920, exon 2 of 27)	exon (NM_206920, exon 2 of 27)	804	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
79515	chr16	801451	802530	+	0	NA	Intergenic	Intergenic	-1256	NM_016541	51764		NM_016541	ENSG00000127588	GNG13	G(gamma)13|HG3J|h2-35	G protein subunit gamma 13	protein-coding
23299	chr1	228068201	228068600	+	0	NA	Intergenic	Intergenic	8150	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
67170	chr14	68797251	68797800	+	0	NA	Intergenic	Intergenic	-1282	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
53911	chr12	71654251	71654550	+	0	NA	intron (NM_144982, intron 2 of 34)	AluJb|SINE|Alu	9448	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
102600	chr17	75906301	75906980	+	0	NA	Intergenic	Intergenic	-1756	NM_032478	64978		NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3|mL38	mitochondrial ribosomal protein L38	protein-coding
120162	chr19	42241271	42241430	+	0	NA	intron (NM_019884, intron 1 of 10)	intron (NM_019884, intron 1 of 10)	1252	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
62186	chr13	97479601	97479800	+	0	NA	Intergenic	L1MC1|LINE|L1	45531	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
123234	chr19	52940901	52941200	+	0	NA	intron (NM_001202473, intron 3 of 3)	AluJb|SINE|Alu	1544	NR_037805	399669		NM_203307	ENSG00000293246	ZNF321P	ZNF321	zinc finger protein 321, pseudogene	pseudo
61582	chr13	72756171	72756530	+	0	NA	TTS (NM_001286747)	TTS (NM_001286747)	25550	NM_001322349	22894		NM_014953	ENSG00000083520	DIS3	2810028N01Rik|EXOSC11|KIAA1008|RRP44|dis3p	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding
202106	chr6	154738571	154739430	+	0	NA	intron (NM_001286199, intron 2 of 20)	intron (NM_001286199, intron 2 of 20)	5584	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
7440	chr1	32984301	32985100	+	0	NA	Intergenic	MIR3|SINE|MIR	-19891	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
36394	chr11	4057571	4058400	+	0	NA	intron (NM_001382568, intron 4 of 11)	MIRb|SINE|MIR	-36700	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
213357	chr7	135660101	135660680	+	0	NA	Intergenic	Intergenic	-2124	NM_001130929	647087		NM_001130929	ENSG00000243317	STMP1	C7orf73|Mm47|Mtlbn|PL-5283	short transmembrane mitochondrial protein 1	protein-coding
230113	chr9	127698371	127698630	+	0	NA	Intergenic	AluJb|SINE|Alu	-7705	NR_037473	100500872		NR_037473	ENSG00000283874	MIR3911	mir-3911	microRNA 3911	ncRNA
212269	chr7	123530601	123530800	+	0	NA	intron (NM_178827, intron 1 of 12)	AluSq|SINE|Alu	2248	NM_001321293	154865		NM_178827	ENSG00000164675	IQUB	TRS4	IQ motif and ubiquitin domain containing	protein-coding
70550	chr14	102530701	102531100	+	0	NA	Intergenic	MER51B|LTR|ERV1	-8744	NR_036192	100422954		NR_036192	ENSG00000266015	MIR4309	-	microRNA 4309	ncRNA
203748	chr7	1158701	1158900	+	0	NA	intron (NM_001365383, intron 1 of 5)	intron (NM_001365383, intron 1 of 5)	1396	NM_001365381	90637		NM_182491	ENSG00000178381	ZFAND2A	AIRAP	zinc finger AN1-type containing 2A	protein-coding
14105	chr1	120922121	120922780	+	0	NA	intron (NR_109754, intron 1 of 2)	MER103C|DNA|hAT-Charlie	-8336	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
131510	chr2	96547771	96547930	+	0	NA	intron (NM_001319096, intron 2 of 5)	Charlie15b|DNA|hAT-Charlie	9971	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
138669	chr2	212979121	212979380	+	0	NA	Intergenic	Intergenic	-52914	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
146169	chr20	48735071	48735850	+	0	NA	intron (NM_020820, intron 3 of 39)	intron (NM_020820, intron 3 of 39)	92539	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
235795	chrX	49172201	49173180	+	0	NA	intron (NM_002668, intron 1 of 4)	CpG	792	NM_002668	5355		NM_002668	ENSG00000102007	PLP2	A4|A4LSB	proteolipid protein 2	protein-coding
208667	chr7	73157971	73158130	+	0	NA	intron (NR_002206, intron 1 of 23)	AluSp|SINE|Alu	-2601	NM_001382504	643862		NM_001382504	ENSG00000274570	SPDYE10	SPDYE10P	speedy/RINGO cell cycle regulator family member E10	protein-coding
124903	chr2	8476321	8476600	+	0	NA	Intergenic	L2c|LINE|L2	107332	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
223037	chr8	143355051	143356080	+	0	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	4412	NM_001258446	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
13214	chr1	112646101	112646450	+	0	NA	intron (NM_006135, intron 1 of 9)	L1P4|LINE|L1	26443	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
28672	chr10	60647121	60647780	+	0	NA	intron (NM_001204403, intron 1 of 43)	intron (NM_001204403, intron 1 of 43)	-74494	NM_001204404	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
195843	chr6	41424521	41425430	+	0	NA	Intergenic	MIRc|SINE|MIR	-77469	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
96564	chr17	40446671	40446930	+	0	NA	intron (NM_001552, intron 1 of 3)	intron (NM_001552, intron 1 of 3)	3350	NM_001552	3487		NM_001552	ENSG00000141753	IGFBP4	BP-4|HT29-IGFBP|IBP4|IGFBP-4	insulin like growth factor binding protein 4	protein-coding
117164	chr19	19337151	19337850	+	0	NA	intron (NM_015329, intron 4 of 18)	intron (NM_015329, intron 4 of 18)	16671	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
160963	chr3	36991321	36991650	+	0	NA	exon (NM_014805, exon 1 of 1)	exon (NM_014805, exon 1 of 1)	1646	NM_014805	9852		NM_014805	ENSG00000178567	EPM2AIP1	-	EPM2A interacting protein 1	protein-coding
100184	chr17	58660351	58660450	+	0	NA	intron (NM_198393, intron 1 of 32)	AluSq2|SINE|Alu	31645	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
115977	chr19	17065001	17066180	+	0	NA	intron (NM_001011699, intron 3 of 10)	AluSg|SINE|Alu	9862	NM_033417	93323		NM_033417	ENSG00000131351	HAUS8	DGT4|HICE1|NY-SAR-48	HAUS augmin like complex subunit 8	protein-coding
176841	chr4	102580171	102580730	+	0	NA	intron (NM_001382625, intron 9 of 24)	intron (NM_001382625, intron 9 of 24)	-77964	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
137006	chr2	190645871	190646750	+	0	NA	Intergenic	Intergenic	-2585	NM_001321313	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
138580	chr2	207767751	207767850	+	0	NA	exon (NM_003468, exon 2 of 2)	exon (NM_003468, exon 2 of 2)	2106	NM_003468	7855		NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5|MCOPCB11	frizzled class receptor 5	protein-coding
123380	chr19	53906651	53907330	+	0	NA	3' UTR (NM_002739, exon 18 of 18)	3' UTR (NM_002739, exon 18 of 18)	-2288	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
144888	chr20	36928521	36928780	+	0	NA	intron (NM_001363733, intron 5 of 15)	AluSg4|SINE|Alu	23058	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
124653	chr2	2682051	2682350	+	0	NA	Intergenic	L2|LINE|L2	-350925	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
73192	chr15	41508201	41508400	+	0	NA	intron (NM_206961, intron 7 of 18)	AluSx|SINE|Alu	5527	NM_002344	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
157638	chr22	46113721	46113980	+	0	NA	TTS (NR_027033)	TTS (NR_027033)	164	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
14498	chr1	144558351	144558880	+	0	NA	Intergenic	Intergenic	-6672	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
108533	chr18	74456301	74456550	+	0	NA	intron (NM_001044369, intron 1 of 3)	CpG	883	NM_001044369	125704		NM_001044369	ENSG00000187773	DIPK1C	C18orf51|FAM69C|FNCAD	divergent protein kinase domain 1C	protein-coding
156884	chr22	42141401	42141600	+	0	NA	intron (NR_145674, intron 6 of 8).4	intron (NR_145674, intron 6 of 8).4	2983	NR_002570	1564		NM_001002910		CYP2D7	CYP2D|CYP2D6|CYP2D7AP|CYP2D7P|CYP2D7P1|CYP2D@|P450C2D|P450DB1|RNA40057	cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)	protein-coding
231534	chr9	131443301	131443500	+	0	NA	intron (NM_013318, intron 5 of 31)	AluY|SINE|Alu	-42265	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
207285	chr7	43991801	43992000	+	0	NA	intron (NR_003655, intron 4 of 15)	intron (NR_003655, intron 4 of 15)	-5968	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
210265	chr7	99403701	99404180	+	0	NA	intron (NM_014891, intron 2 of 5)	intron (NM_014891, intron 2 of 5)	4657	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
71531	chr14	106184271	106185240	+	0	NA	Intergenic	Intergenic	-102919	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
75539	chr15	66701801	66702500	+	0	NA	promoter-TSS (NR_027654)	promoter-TSS (NR_027654)	-86	NM_005585	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
33859	chr10	124396271	124396430	+	0	NA	TTS (NM_000274)	TTS (NM_000274)	22573	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
32339	chr10	102244971	102246630	+	0	NA	5' UTR (NM_001377141, exon 1 of 40)	5' UTR (NM_001377141, exon 1 of 40)	268	NR_165088	8729		NM_004193	ENSG00000107862	GBF1	ARF1GEF|CMT2GG|CMTDI2|CMTDIA	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
57154	chr12	121294421	121294680	+	0	NA	intron (NM_172215, intron 1 of 15)	intron (NM_172215, intron 1 of 15)	2159	NM_001270485	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
139218	chr2	219287951	219289050	+	0	NA	Intergenic	Intergenic	5700	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
27740	chr10	35134951	35135250	+	0	NA	intron (NM_183060, intron 1 of 5)	intron (NM_183060, intron 1 of 5)	-2682	NM_183012	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
163686	chr3	52247801	52248850	+	0	NA	intron (NM_001122870, intron 4 of 8)	intron (NM_001122870, intron 4 of 8)	2158	NM_001122870	132160		NM_144641	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein-coding
184407	chr5	98913871	98914500	+	0	NA	intron (NR_157078, intron 2 of 36)	MLT1J|LTR|ERVL-MaLR	-14377	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
153873	chr22	30257901	30258300	+	0	NA	Intergenic	Intergenic	8140	NM_001319108	5008		NM_020530	ENSG00000099985	OSM	-	oncostatin M	protein-coding
25652	chr10	8330571	8330730	+	0	NA	Intergenic	Intergenic	-62345	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
1644	chr1	3793671	3793830	+	0	NA	intron (NM_020710, intron 1 of 6)	LTR8A|LTR|ERV1	2748	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
56505	chr12	116319921	116320380	+	0	NA	Intergenic	Intergenic	-42457	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
114639	chr19	13008921	13009600	+	0	NA	intron (NM_001365902, intron 1 of 10)	intron (NM_001365902, intron 1 of 10)	13785	NM_001365902	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
74483	chr15	59996401	59996600	+	0	NA	Intergenic	Intergenic	-7811	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
154926	chr22	37210101	37210530	+	0	NA	intron (NM_001051, intron 1 of 1)	intron (NM_001051, intron 1 of 1)	374	NM_001278687	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
75768	chr15	68651071	68651300	+	0	NA	intron (NM_001190456, intron 2 of 11)	intron (NM_001190456, intron 2 of 11)	9682	NM_001324015	10391		NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
105466	chr17	83055371	83056130	+	0	NA	Intergenic	Intergenic	-3940	NM_001009905	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
28225	chr10	45373811	45374930	+	0	NA	exon (NM_000698, exon 1 of 14)	exon (NM_000698, exon 1 of 14)	154	NM_000698	240		NM_000698	ENSG00000012779	ALOX5	5-LO|5-LOX|5LPG|LOG5	arachidonate 5-lipoxygenase	protein-coding
93050	chr17	17399051	17399350	+	0	NA	Intergenic	Intergenic	-77800	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
173316	chr4	7521751	7522250	+	0	NA	intron (NM_020777, intron 2 of 26)	intron (NM_020777, intron 2 of 26)	61972	NR_036238	100422826		NR_036238	ENSG00000266690	MIR4274	-	microRNA 4274	ncRNA
230736	chr9	128829321	128830800	+	0	NA	promoter-TSS (NM_016390)	promoter-TSS (NM_016390)	-266	NM_016390	51490		NM_016390	ENSG00000198917	SPOUT1	C9orf114|CENP-32|CENP32|HSPC109	SPOUT domain containing methyltransferase 1	protein-coding
215238	chr7	156903401	156904230	+	0	NA	Intergenic	Intergenic	-10607	NR_146959	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
77002	chr15	78440301	78440700	+	0	NA	intron (NM_001320942, intron 2 of 21)	AluJr|SINE|Alu	2079	NM_001320942	3658		NM_004136	ENSG00000136381	IREB2	ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA	iron responsive element binding protein 2	protein-coding
224302	chr9	6487921	6488730	+	0	NA	intron (NM_152896, intron 9 of 15)	L1MD1|LINE|L1	75126	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
117505	chr19	20036401	20036600	+	0	NA	intron (NM_033196, intron 1 of 3)	AluSq|SINE|Alu	2755	NM_001077349	91120		NM_033196	ENSG00000197124	ZNF682	BC39498_3	zinc finger protein 682	protein-coding
76145	chr15	72627531	72627880	+	0	NA	intron (NR_135684, intron 2 of 3)	intron (NR_135684, intron 2 of 3)	9250	NR_135684	102723640		NR_135684	ENSG00000259783	LINC02259	-	long intergenic non-protein coding RNA 2259	ncRNA
13722	chr1	116796871	116797600	+	0	NA	Intergenic	Intergenic	42805	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
183171	chr5	75336281	75338150	+	0	NA	promoter-TSS (NM_000859)	promoter-TSS (NM_000859)	-5	NM_000859	3156		NM_000859	ENSG00000113161	HMGCR	LDLCQ3|LGMDR28|MYPLG	3-hydroxy-3-methylglutaryl-CoA reductase	protein-coding
166776	chr3	122421271	122421430	+	0	NA	TTS (NR_026698)	TTS (NR_026698)	5144	NR_125405	102723582		NR_125405	ENSG00000272758	WDR5B-DT	-	WDR5B divergent transcript	ncRNA
201835	chr6	150072121	150072550	+	0	NA	Intergenic	Intergenic	-3214	NM_024518	79465		NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
49469	chr12	25182421	25183030	+	0	NA	intron (NR_147909, intron 1 of 14)	AluJr|SINE|Alu	12435	NR_147909	55259		NM_018272	ENSG00000118307	DNAI7	CASC1|CFAP94|LAS1|PPP1R54	dynein axonemal intermediate chain 7	protein-coding
232866	chr9	136805821	136806200	+	0	NA	intron (NR_024580, intron 4 of 4)	intron (NR_024580, intron 4 of 4)	-1938	NM_024718	55684		NM_017995	ENSG00000196642	RABL6	C9orf86|PARF|RBEL1|pp8875	RAB, member RAS oncogene family like 6	protein-coding
177553	chr4	119209051	119209600	+	0	NA	intron (NR_125931, intron 1 of 2)	intron (NR_125931, intron 1 of 2)	-3302	NM_019050	54532		NM_019050	ENSG00000145390	USP53	PFIC7	ubiquitin specific peptidase 53	protein-coding
223210	chr8	143587951	143588400	+	0	NA	intron (NM_001195203, intron 1 of 7).2	intron (NM_001195203, intron 1 of 7).2	9238	NM_001130057	1936		NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
164474	chr3	59979121	59979580	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	101559	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
179140	chr4	169566321	169566630	+	0	NA	intron (NR_164631, intron 10 of 14)	intron (NR_164631, intron 10 of 14)	46108	NM_001199400	4750		NM_012224	ENSG00000137601	NEK1	ALS24|NY-REN-55|OFD2|SRPS2|SRPS2A|SRTD6	NIMA related kinase 1	protein-coding
39174	chr11	57376201	57376400	+	0	NA	TTS (NM_006093)	TTS (NM_006093)	4850	NM_006093	10394		NM_006093	ENSG00000156575	PRG3	MBP2|MBPH	proteoglycan 3, pro eosinophil major basic protein 2	protein-coding
95656	chr17	38130101	38130300	+	0	NA	intron (NM_001291459, intron 3 of 13).9	intron (NM_001291459, intron 3 of 13).9	2230	NM_001291466	102723859		NM_001291466	ENSG00000278599	TBC1D3E	PRC17|TBC1D3|TBC1D3A|TBC1DE3	TBC1 domain family member 3E	protein-coding
189535	chr5	173891901	173892100	+	0	NA	intron (NM_030627, intron 1 of 9)	intron (NM_030627, intron 1 of 9)	-1051	NM_001308192	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
159869	chr3	16802501	16802700	+	0	NA	Intergenic	Intergenic	-82355	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
92798	chr17	15999201	16002030	+	0	NA	promoter-TSS (NM_001042697)	promoter-TSS (NM_001042697)	791	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
72869	chr15	40278351	40278700	+	0	NA	3' UTR (NM_001190479, exon 1 of 1)	3' UTR (NM_001190479, exon 1 of 1)	4061	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
63421	chr13	114091421	114091880	+	0	NA	intron (NM_001320821, intron 1 of 25).2	L1M1|LINE|L1	-13695	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
24888	chr10	992801	993000	+	0	NA	intron (NM_012341, intron 2 of 16)	intron (NM_012341, intron 2 of 16)	4466	NM_012341	23560		NM_012341	ENSG00000107937	GTPBP4	CRFG|NGB|NOG1	GTP binding protein 4	protein-coding
166465	chr3	114225921	114227050	+	0	NA	Intergenic	L2b|LINE|L2	11093	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
37345	chr11	14891901	14892950	+	0	NA	promoter-TSS (NM_001377217)	promoter-TSS (NM_001377217)	-194	NM_024514	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
103086	chr17	77327771	77328650	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	8695	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
28909	chr10	63157721	63158630	+	0	NA	Intergenic	Intergenic	24847	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
53152	chr12	57898751	57900050	+	0	NA	Intergenic	Intergenic	-2918	NR_148947	283387		NR_148947	ENSG00000245651	LOC283387	-	uncharacterized LOC283387	ncRNA
223128	chr8	143481621	143482080	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	24398	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
105775	chr18	2806901	2807100	+	0	NA	Intergenic	L1M4b|LINE|L1	-40006	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
35090	chr11	630101	630300	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3019	NM_021920	6343		NM_021920	ENSG00000070031	SCT	-	secretin	protein-coding
86571	chr16	67228471	67228850	+	0	NA	TTS (NM_013241)	TTS (NM_013241)	1530	NM_014187	29100		NM_014187	ENSG00000168701	TMEM208	HSPC171|SND2|hSND2	transmembrane protein 208	protein-coding
151071	chr21	44793101	44793730	+	0	NA	intron (NM_003343, intron 1 of 5)	intron (NM_003343, intron 1 of 5)	8405	NM_182688	7327		NM_003343	ENSG00000184787	UBE2G2	UBC7	ubiquitin conjugating enzyme E2 G2	protein-coding
50565	chr12	48175551	48175950	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-7894	NM_001013635	387856		NM_001013635	ENSG00000177875	CCDC184	C12orf68	coiled-coil domain containing 184	protein-coding
228803	chr9	111908701	111909100	+	0	NA	intron (NM_003358, intron 1 of 8)	intron (NM_003358, intron 1 of 8)	12086	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
184044	chr5	91377251	91377550	+	0	NA	intron (NR_138071, intron 2 of 7)	intron (NR_138071, intron 2 of 7)	2697	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
5953	chr1	26894271	26894630	+	0	NA	intron (NM_022078, intron 2 of 6)	intron (NM_022078, intron 2 of 6)	-4167	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
141070	chr2	238268401	238268600	+	0	NA	intron (NM_022817, intron 7 of 22)	intron (NM_022817, intron 7 of 22)	20110	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
155919	chr22	39597621	39598880	+	0	NA	exon (NM_021096, exon 2 of 37)	exon (NM_021096, exon 2 of 37)	27497	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
33696	chr10	120734651	120735150	+	0	NA	Intergenic	Intergenic	116279	NR_033850	283089		NR_033850	ENSG00000227165	WDR11-DT	WDR11-AS1	WDR11 divergent transcript	ncRNA
192304	chr6	21587121	21587800	+	0	NA	Intergenic	CpG	-6291	NM_003107	6659		NM_003107	ENSG00000124766	SOX4	CSS10|EVI16	SRY-box transcription factor 4	protein-coding
225888	chr9	39678721	39679700	+	0	NA	Intergenic	L1P4b|LINE|L1	130949	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
115999	chr19	17109801	17110800	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	18065	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
24181	chr1	235887701	235888850	+	0	NA	Intergenic	L3|LINE|CR1	-4562	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
22598	chr1	223230091	223231530	+	0	NA	intron (NM_017982, intron 5 of 8)	MIRb|SINE|MIR	-87562	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
148524	chr20	64100021	64101000	+	0	NA	3' UTR (NM_182647, exon 5 of 5)	3' UTR (NM_182647, exon 5 of 5)	7055	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
35065	chr11	605051	605150	+	0	NA	intron (NM_001286582, intron 10 of 17)	intron (NM_001286582, intron 10 of 17)	10850	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
192031	chr6	16446321	16446830	+	0	NA	intron (NM_000332, intron 7 of 8)	MER5A|DNA|hAT-Charlie	207988	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
193662	chr6	30913801	30914730	+	0	NA	promoter-TSS (NM_001167733)	promoter-TSS (NM_001167733)	27	NM_020442	57176		NM_020442	ENSG00000137411	VARS2	COXPD20|VALRS|VARS2L|VARSL	valyl-tRNA synthetase 2, mitochondrial	protein-coding
50590	chr12	48553651	48553950	+	0	NA	Intergenic	L1PA4|LINE|L1	16246	NM_002289	3906		NM_002289	ENSG00000167531	LALBA	HAMLET|LYZG	lactalbumin alpha	protein-coding
91405	chr17	4696071	4697200	+	0	NA	intron (NM_001278241, intron 1 of 18)	L2a|LINE|L2	7502	NM_001278241	27043		NM_014389	ENSG00000141456	PELP1	MNAR|P160	proline, glutamate and leucine rich protein 1	protein-coding
91891	chr17	7283721	7284030	+	0	NA	intron (NM_001042, intron 4 of 10)	intron (NM_001042, intron 4 of 10)	2157	NM_001042	6517		NM_001042	ENSG00000181856	SLC2A4	GLUT4	solute carrier family 2 member 4	protein-coding
65618	chr14	52272351	52273030	+	0	NA	intron (NM_001281469, intron 2 of 2)	intron (NM_001281469, intron 2 of 2)	4992	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
95899	chr17	38892301	38892900	+	0	NA	intron (NM_006148, intron 3 of 6)	intron (NM_006148, intron 3 of 6)	-22379	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
121505	chr19	47176571	47177430	+	0	NA	intron (NM_001145713, intron 6 of 6)	intron (NM_001145713, intron 6 of 6)	46165	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
235478	chrX	46655671	46655830	+	0	NA	intron (NM_032591, intron 7 of 16)	L1PA3|LINE|L1	81985	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
176368	chr4	88529051	88529350	+	0	NA	intron (NM_001375482, intron 1 of 24)	AluJr4|SINE|Alu	5357	NM_001375483	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
87779	chr16	75421201	75421600	+	0	NA	intron (NM_006324, intron 1 of 6)	L1ME4b|LINE|L1	12103	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
73004	chr15	40694251	40696050	+	0	NA	promoter-TSS (NM_001164270)	promoter-TSS (NM_001164270)	-24	NM_001164270	5888		NM_002875	ENSG00000051180	RAD51	BRCC5|FANCR|HRAD51|HsRad51|HsT16930|MRMV2|RAD51A|RECA	RAD51 recombinase	protein-coding
17724	chr1	158935601	158935800	+	0	NA	intron (NM_152501, intron 1 of 8)	intron (NM_152501, intron 1 of 8)	4148	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
13526	chr1	114780051	114781480	+	0	NA	promoter-TSS (NM_001102396)	promoter-TSS (NM_001102396)	-80	NR_049741	80143		NM_025073	ENSG00000052723	SIKE1	SIKE	suppressor of IKBKE 1	protein-coding
230532	chr9	128364501	128365530	+	0	NA	intron (NR_031672, intron 2 of 2).4	intron (NR_031672, intron 2 of 2).4	-6304	NM_001135947	81605		NM_030914	ENSG00000167118	URM1	C9orf74	ubiquitin related modifier 1	protein-coding
170187	chr3	183766401	183767400	+	0	NA	intron (NM_001351371, intron 15 of 21)	AluJo|SINE|Alu	43551	NR_046727	100874113		NR_046727		YEATS2-AS1	-	YEATS2 antisense RNA 1	ncRNA
222785	chr8	142025071	142025290	+	0	NA	Intergenic	Intergenic	-151159	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
107426	chr18	46201671	46201830	+	0	NA	intron (NM_145055, intron 1 of 4)	L1MEd|LINE|L1	27716	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
166572	chr3	115836851	115837200	+	0	NA	intron (NM_001318915, intron 6 of 8)	intron (NM_001318915, intron 6 of 8)	68101	NR_145779	109623450		NR_145779		SNORD155	-	small nucleolar RNA, C/D box 155	snoRNA
215149	chr7	155467871	155468630	+	0	NA	Intergenic	CpG	10121	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
92433	chr17	8441371	8442030	+	0	NA	intron (NM_001025579, intron 1 of 9)	intron (NM_001025579, intron 1 of 9)	5816	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
46274	chr11	124839121	124840380	+	0	NA	Intergenic	CpG	-25682	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
10297	chr1	64851921	64852450	+	0	NA	intron (NM_001321857, intron 11 of 24)	MIR|SINE|MIR	107110	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
102878	chr17	76513901	76514130	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-12588	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
139120	chr2	218986271	218986900	+	0	NA	Intergenic	Intergenic	-1401	NM_017521	54738		NM_017521	ENSG00000163497	FEV	HSRNAFEV|PET-1	FEV transcription factor, ETS family member	protein-coding
185856	chr5	132498121	132498500	+	0	NA	Intergenic	Intergenic	-7537	NM_001354925	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
91198	chr17	3897651	3897950	+	0	NA	3' UTR (NM_002558, exon 12 of 12)	3' UTR (NM_002558, exon 12 of 12)	-4747	NM_032294	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
49593	chr12	27179951	27180050	+	0	NA	Intergenic	Intergenic	-64286	NM_015000	23012		NM_015000	ENSG00000211455	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
18051	chr1	160626071	160626580	+	0	NA	intron (NR_104401, intron 3 of 5)	intron (NR_104401, intron 3 of 5)	20719	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
97540	chr17	44064201	44064400	+	0	NA	intron (NM_001371445, intron 1 of 4)	MIR|SINE|MIR	2371	NM_001369484	124801		NM_152344	ENSG00000161654	LSM12	PNAS-135	LSM12 homolog	protein-coding
215092	chr7	155190451	155191180	+	0	NA	Intergenic	Intergenic	-106957	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
112936	chr19	7694421	7694680	+	0	NA	intron (NM_002002, intron 8 of 10)	intron (NM_002002, intron 8 of 10)	4929	NM_001207019	2208		NM_002002	ENSG00000104921	FCER2	BLAST-2|CD23|CD23A|CLEC4J|FCE2|FCErII|IGEBF	Fc epsilon receptor II	protein-coding
152629	chr22	21442051	21442650	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	-24820	NM_001207052	645426		NM_001207052	ENSG00000206140	TMEM191C	-	transmembrane protein 191C	protein-coding
173425	chr4	8202721	8203080	+	0	NA	intron (NM_001318480, intron 1 of 17)	intron (NM_001318480, intron 1 of 17)	3610	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
145302	chr20	41048701	41049680	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	20368	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
176396	chr4	88818521	88819450	+	0	NA	intron (NM_014883, intron 7 of 23)	intron (NM_014883, intron 7 of 23)	4376	NM_001265578	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
71777	chr15	21324601	21325430	+	0	NA	Intergenic	CpG	-27186	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
108112	chr18	62197901	62198300	+	0	NA	intron (NR_144408, intron 1 of 32)	intron (NR_144408, intron 1 of 32)	10845	NR_144403	57614		NM_020854	ENSG00000134444	RELCH	HsT3308|HsT885|KIAA1468	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	protein-coding
122111	chr19	48794051	48794350	+	0	NA	TTS (NM_001164773)	TTS (NM_001164773)	16829	NM_001284325	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
162000	chr3	46376971	46377530	+	0	NA	intron (NR_125406, intron 2 of 3)	intron (NR_125406, intron 2 of 3)	7108	NM_001100168	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
51464	chr12	52058601	52059180	+	0	NA	exon (NM_001202234, exon 8 of 8)	exon (NM_001202234, exon 8 of 8)	7448	NM_173157	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
168264	chr3	141440451	141440550	+	0	NA	intron (NM_001376165, intron 4 of 4)	L4_C_Mam|LINE|RTE-X	37486	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
15071	chr1	148455351	148456150	+	0	NA	intron (NR_027468, intron 1 of 4)	Charlie23a|DNA|hAT-Charlie	4170	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
731	chr1	1466901	1467100	+	0	NA	intron (NM_001039211, intron 11 of 11)	L1MC4a|LINE|L1	-4765	NM_031921	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
11079	chr1	85254621	85255500	+	0	NA	intron (NR_024113, intron 3 of 3)	intron (NR_024113, intron 3 of 3)	4602	NR_024113	148423		NM_198077	ENSG00000162642	C1orf52	gm117	chromosome 1 open reading frame 52	protein-coding
9985	chr1	55021871	55022400	+	0	NA	Intergenic	Intergenic	-17413	NM_174936	255738		NM_174936	ENSG00000169174	PCSK9	FH3|FHCL3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
220789	chr8	102646971	102647530	+	0	NA	Intergenic	Intergenic	6714	NR_103759	7071		NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	KLF transcription factor 10	protein-coding
81024	chr16	4257701	4258280	+	0	NA	3' UTR (NM_003223, exon 7 of 7)	3' UTR (NM_003223, exon 7 of 7)	-4201	NR_039999	100507501		NR_039999		LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA
226290	chr9	68324551	68325030	+	0	NA	Intergenic	SATR1|Satellite|Satellite	21923	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
60088	chr13	36282871	36283030	+	0	NA	intron (NM_001198910, intron 2 of 15)	intron (NM_001198910, intron 2 of 15)	14864	NM_001144984	728591		NM_001144981	ENSG00000242715	CCDC169	C13orf38	coiled-coil domain containing 169	protein-coding
101182	chr17	65181221	65181680	+	0	NA	intron (NM_003835, intron 9 of 18)	intron (NM_003835, intron 9 of 18)	44080	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
61786	chr13	75316651	75317250	+	0	NA	intron (NM_001286659, intron 10 of 18)	MIR|SINE|MIR	76362	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
26764	chr10	22723771	22723930	+	0	NA	Intergenic	AluSx3|SINE|Alu	-9272	NM_005028	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
171539	chr3	196744321	196744580	+	0	NA	intron (NM_002577, intron 1 of 14)	AluJb|SINE|Alu	4593	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
150625	chr21	43383071	43383830	+	0	NA	Intergenic	Intergenic	-21101	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
91356	chr17	4531051	4531150	+	0	NA	exon (NM_001124758, exon 5 of 13)	exon (NM_001124758, exon 5 of 13)	24284	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
17212	chr1	156265751	156266250	+	0	NA	exon (NM_001323615, exon 11 of 21)	exon (NM_001323615, exon 11 of 21)	16825	NM_015327	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
90504	chr17	1458571	1458730	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2418	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
113884	chr19	10673771	10673930	+	0	NA	intron (NM_153464, intron 4 of 17)	AluSx1|SINE|Alu	19504	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
163328	chr3	50374151	50374830	+	0	NA	intron (NM_001174051, intron 22 of 38)	intron (NM_001174051, intron 22 of 38)	9127	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
162281	chr3	47379321	47379580	+	0	NA	Intergenic	AluJb|SINE|Alu	-1571	NM_001304482	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
52666	chr12	56336701	56337280	+	0	NA	Intergenic	Intergenic	-1894	NM_016584	51561		NM_016584	ENSG00000110944	IL23A	IL-23|IL-23A|IL23P19|P19|SGRF	interleukin 23 subunit alpha	protein-coding
64239	chr14	23097671	23098280	+	0	NA	exon (NM_017924, exon 2 of 2)	exon (NM_017924, exon 2 of 2)	-2361	NM_001164815	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
184922	chr5	112925221	112925480	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-3123	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
196947	chr6	52651721	52652360	+	0	NA	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-12361	NR_024405	730101		NR_024403	ENSG00000291006	LOC730101	-	uncharacterized LOC730101	ncRNA
32631	chr10	103679871	103680230	+	0	NA	intron (NM_014631, intron 6 of 13)	AluSx1|SINE|Alu	-1835	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
177085	chr4	108061051	108061150	+	0	NA	intron (NM_001130714, intron 9 of 9)	intron (NM_001130714, intron 9 of 9)	56436	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
14733	chr1	145985501	145986130	+	0	NA	Intergenic	AluSc|SINE|Alu	9929	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
134157	chr2	134233211	134234400	+	0	NA	intron (NM_001371457, intron 1 of 16)	MIRb|SINE|MIR	-20267	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
204159	chr7	2406801	2407700	+	0	NA	intron (NM_018641, intron 1 of 1)	AluJr|SINE|Alu	3639	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
77194	chr15	80755921	80756200	+	0	NA	TTS (NM_021214)	TTS (NM_021214)	-23310	NM_001293304	57214		NM_018689	ENSG00000103888	CEMIP	CCSP1|CEMIP1|HYBID|KIAA1199|TMEM2L	cell migration inducing hyaluronidase 1	protein-coding
220617	chr8	100928101	100928780	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	22131	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
64988	chr14	38070201	38071350	+	0	NA	Intergenic	Intergenic	-137129	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
116873	chr19	18654021	18654280	+	0	NA	intron (NM_001345983, intron 1 of 2)	(CACC)n|Simple_repeat|Simple_repeat	9512	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
68809	chr14	91251971	91252410	+	0	NA	intron (NM_001348437, intron 1 of 2)	intron (NM_001348437, intron 1 of 2)	1690	NM_001348437	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
190216	chr5	178229901	178230200	+	0	NA	non-coding (NR_103510, exon 4 of 14)	non-coding (NR_103510, exon 4 of 14)	2752	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
42942	chr11	73530201	73530400	+	0	NA	intron (NM_015159, intron 1 of 7)	LTR50|LTR|ERVL	67812	NM_001286050	23201		NM_015159	ENSG00000054965	FAM168A	KIAA0280|TCRP1	family with sequence similarity 168 member A	protein-coding
121164	chr19	46402251	46403000	+	0	NA	Intergenic	L2a|LINE|L2	10939	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
86620	chr16	67396551	67397130	+	0	NA	intron (NM_013304, intron 8 of 10)	intron (NM_013304, intron 8 of 10)	-3342	NM_016140	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
136821	chr2	182642371	182642630	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-73757	NR_073366	54431		NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
233205	chr9	137219721	137220050	+	0	NA	TTS (NM_001144027)	TTS (NM_001144027)	1438	NM_031297	727800		NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
21352	chr1	204763751	204764130	+	0	NA	Intergenic	Intergenic	-64712	NM_001378329	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
115124	chr19	14366421	14367130	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-2785	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
229322	chr9	120892501	120893980	+	0	NA	intron (NM_001286840, intron 1 of 14)	intron (NM_001286840, intron 1 of 14)	1656	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
197261	chr6	70520621	70520880	+	0	NA	intron (NM_001162529, intron 12 of 21)	intron (NM_001162529, intron 12 of 21)	-46180	NM_145267	135154		NM_145267	ENSG00000154079	SDHAF4	C6orf57|Sdh8	succinate dehydrogenase complex assembly factor 4	protein-coding
214983	chr7	152130971	152131130	+	0	NA	Intergenic	Intergenic	56013	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
208960	chr7	74187421	74187950	+	0	NA	exon (NM_031992, exon 2 of 6)	exon (NM_031992, exon 2 of 6)	-3513	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
6122	chr1	27349051	27350650	+	0	NA	intron (NM_032872, intron 8 of 14)	CpG-732	7828	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
195433	chr6	36959221	36959480	+	0	NA	exon (NM_001199159, exon 3 of 8)	exon (NM_001199159, exon 3 of 8)	4612	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
158874	chr3	9862401	9863230	+	0	NA	Intergenic	CpG	15997	NM_001199623	63924		NM_022094	ENSG00000187288	CIDEC	CIDE-3|CIDE3|FPLD5|FSP27	cell death inducing DFFA like effector c	protein-coding
88185	chr16	81729721	81731330	+	0	NA	Intergenic	Intergenic	-48766	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
194035	chr6	31840051	31840550	+	0	NA	TTS (NR_160950)	TTS (NR_160950)	3224	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
214212	chr7	148711271	148711630	+	0	NA	intron (NM_001370664, intron 1 of 21)	intron (NM_001370664, intron 1 of 21)	11740	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
211053	chr7	102459751	102460050	+	0	NA	intron (NM_017621, intron 1 of 2)	AluSx1|SINE|Alu	4963	NM_017621	54784		NM_017621	ENSG00000160993	ALKBH4	ABH4	alkB homolog 4, lysine demethylase	protein-coding
206329	chr7	30313701	30314100	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-24010	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
82048	chr16	12539071	12539430	+	0	NA	intron (NM_032167, intron 20 of 20)	L1MD3|LINE|L1	-181071	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
136327	chr2	175163701	175164130	+	0	NA	intron (NR_045772, intron 1 of 14)	AluSx1|SINE|Alu	3794	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
215176	chr7	155676151	155676450	+	0	NA	intron (NM_053043, intron 3 of 17)	intron (NM_053043, intron 3 of 17)	31639	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
95525	chr17	36552621	36553230	+	0	NA	intron (NM_024835, intron 2 of 13)	AluSx1|SINE|Alu	8006	NM_024835	79893		NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
160514	chr3	30639371	30639530	+	0	NA	intron (NM_001024847, intron 2 of 7)	MLT2C1|LTR|ERVL	32849	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
115670	chr19	16153571	16154130	+	0	NA	intron (NM_001369809, intron 4 of 4)	intron (NM_001369809, intron 4 of 4)	10165	NR_163153	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
213300	chr7	135145971	135146330	+	0	NA	intron (NM_001305630, intron 2 of 2)	Tigger1|DNA|TcMar-Tigger	-1922	NM_018295	55281		NM_018295	ENSG00000146859	TMEM140	-	transmembrane protein 140	protein-coding
176431	chr4	89270851	89271380	+	0	NA	intron (NM_198281, intron 1 of 1)	MIR|SINE|MIR	36685	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
132002	chr2	100587751	100588850	+	0	NA	Intergenic	L1MC3|LINE|L1	-15439	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
169297	chr3	158634571	158635030	+	0	NA	Intergenic	L1PA2|LINE|L1	-9727	NR_164499	85476		NM_024996	ENSG00000168827	GFM1	COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1|mtEF-G1	G elongation factor mitochondrial 1	protein-coding
200151	chr6	130367771	130368130	+	0	NA	intron (NM_001258276, intron 1 of 1)	intron (NM_001258276, intron 1 of 1)	1669	NM_001258276	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
103534	chr17	78631401	78632430	+	0	NA	intron (NR_110849, intron 1 of 4)	MLT1C|LTR|ERVL-MaLR	142	NR_110848	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
136243	chr2	174609751	174610150	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-11719	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
34308	chr10	132022901	132023430	+	0	NA	Intergenic	Intergenic	-41152	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
7755	chr1	36165321	36165700	+	0	NA	intron (NM_001286365, intron 1 of 15)	AluJb|SINE|Alu	9350	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
20513	chr1	198670801	198671630	+	0	NA	intron (NM_002838, intron 2 of 32)	L2c|LINE|L2	32175	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
98132	chr17	45896951	45897530	+	0	NA	non-coding (NR_024560, exon 1 of 1)	non-coding (NR_024560, exon 1 of 1)	1457	NR_024560	100130148		NR_024560	ENSG00000279685	MAPT-IT1	-	MAPT intronic transcript 1	ncRNA
221333	chr8	123121751	123122050	+	0	NA	intron (NM_145647, intron 11 of 21)	L1MB4|LINE|L1	48651	NM_001363149	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
159656	chr3	15334451	15334550	+	0	NA	intron (NM_001018009, intron 1 of 8)	FLAM_C|SINE|Alu	-1914	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
168786	chr3	151895501	151896050	+	0	NA	intron (NR_110203, intron 1 of 2)	intron (NR_110203, intron 1 of 2)	22132	NM_033050	56670		NM_033050	ENSG00000198829	SUCNR1	GPR91	succinate receptor 1	protein-coding
72520	chr15	34103401	34103600	+	0	NA	exon (NM_152595, exon 1 of 1)	exon (NM_152595, exon 1 of 1)	1417	NM_152595	161779		NM_152595	ENSG00000182405	PGBD4	-	piggyBac transposable element derived 4	protein-coding
187629	chr5	142990721	142991380	+	0	NA	intron (NR_146198, intron 11 of 22)	L1PA5|LINE|L1	-122140	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
118259	chr19	35257351	35258250	+	0	NA	intron (NM_001260490, intron 2 of 6)	intron (NM_001260490, intron 2 of 6)	8798	NM_001385215	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
1588	chr1	3613071	3613430	+	0	NA	Intergenic	Intergenic	-1742	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
83087	chr16	22438471	22438630	+	0	NA	promoter-TSS (NR_027460).3	promoter-TSS (NR_027460).3	-835	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
61053	chr13	48247801	48248230	+	0	NA	intron (NM_021999, intron 1 of 5)	intron (NM_021999, intron 1 of 5)	14809	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
71257	chr14	105202851	105203850	+	0	NA	Intergenic	Intergenic	-22027	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
35320	chr11	1034171	1034530	+	0	NA	intron (NM_005961, intron 1 of 32)	intron (NM_005961, intron 1 of 32)	2368	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
133835	chr2	128063421	128063700	+	0	NA	Intergenic	Intergenic	-27640	NM_020120	56886		NM_020120	ENSG00000136731	UGGT1	HUGT1|UGCGL1|UGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding
6017	chr1	27096571	27096730	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	58475	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
102657	chr17	76074971	76075130	+	0	NA	exon (NM_003857, exon 1 of 2)	exon (NM_003857, exon 1 of 2)	269	NM_003857	8811		NM_003857	ENSG00000182687	GALR2	GAL2-R|GALNR2|GALR-2	galanin receptor 2	protein-coding
198566	chr6	107027851	107029230	+	0	NA	5' UTR (NM_001142470, exon 1 of 5)	5' UTR (NM_001142470, exon 1 of 5)	341	NM_001142468	51250		NM_016487	ENSG00000130349	MTRES1	C6orf203|HSPC230|PRED31	mitochondrial transcription rescue factor 1	protein-coding
232659	chr9	136487601	136488000	+	0	NA	Intergenic	L2a|LINE|L2	-4041	NM_001276418	9919		NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding
159906	chr3	16912401	16912600	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	-20590	NM_015184	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
63509	chr13	114261551	114262050	+	0	NA	intron (NM_001330104, intron 13 of 16)	intron (NM_001330104, intron 13 of 16)	-12028	NR_039724	100616227		NR_039724	ENSG00000265450	MIR4502	-	microRNA 4502	ncRNA
207102	chr7	40136001	40136580	+	0	NA	intron (NM_001193311, intron 1 of 14)	AluSz|SINE|Alu	1285	NM_001193311	79783		NM_024728	ENSG00000175600	SUGCT	C7orf10|DERP13|GA3|ORF19	succinyl-CoA:glutarate-CoA transferase	protein-coding
34742	chr10	133781351	133781450	+	0	NA	Intergenic	MER92-int|LTR|ERV1	-154605	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
161716	chr3	43770801	43771630	+	0	NA	Intergenic	MIRb|SINE|MIR	-79621	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
224781	chr9	22049651	22049950	+	0	NA	intron (NR_120536, intron 3 of 3)	MIRb|SINE|MIR	-40487	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
212028	chr7	114931621	114932630	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	9971	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
189427	chr5	172852871	172853500	+	0	NA	intron (NM_001031711, intron 1 of 9)	intron (NM_001031711, intron 1 of 9)	18934	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
28136	chr10	43438851	43438950	+	0	NA	intron (NM_001355444, intron 1 of 3)	AluJo|SINE|Alu	1789	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
67527	chr14	71002471	71002830	+	0	NA	intron (NM_014982, intron 8 of 35)	L1ME1|LINE|L1	95191	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
16404	chr1	154441351	154441850	+	0	NA	intron (NM_181359, intron 6 of 8)	intron (NM_181359, intron 6 of 8)	-35036	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
232909	chr9	136859071	136860280	+	0	NA	intron (NM_206920, intron 25 of 26)	intron (NM_206920, intron 25 of 26)	6633	NM_001281297	8721		NM_003792	ENSG00000107223	EDF1	CFAP280|EDF-1|MBF1	endothelial differentiation related factor 1	protein-coding
102907	chr17	76559801	76560200	+	0	NA	intron (NR_038108, intron 2 of 3)	AluSq2|SINE|Alu	-1108	NR_004396	677849		NR_004396	ENSG00000199961	SNORD1B	R38B|snR38B	small nucleolar RNA, C/D box 1B	snoRNA
227585	chr9	92378971	92379430	+	0	NA	intron (NM_001286969, intron 3 of 6)	MER21C|LTR|ERVL	25378	NM_014057	4969		NM_014057	ENSG00000106809	OGN	OG|OIF|SLRR3A	osteoglycin	protein-coding
114382	chr19	12548201	12548600	+	0	NA	intron (NM_144976, intron 1 of 3)	AluYj4|SINE|Alu	3082	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
106344	chr18	13134201	13135300	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-82932	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207474	chr7	44623701	44624650	+	0	NA	intron (NM_001363523, intron 1 of 23)	intron (NM_001363523, intron 1 of 23)	17548	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
129923	chr2	73295951	73296350	+	0	NA	Intergenic	Intergenic	-2602	NM_001965	1961		NM_001965	ENSG00000135625	EGR4	AT133|NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
56673	chr12	120001171	120001330	+	0	NA	intron (NR_147894, intron 3 of 8)	AluY|SINE|Alu	11406	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
66330	chr14	61429121	61429600	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	107917	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
128233	chr2	54350551	54350650	+	0	NA	intron (NM_001369401, intron 3 of 4)	MLT1H2|LTR|ERVL-MaLR	19716	NM_001369403	129852		NM_173486	ENSG00000177994	C2orf73	-	chromosome 2 open reading frame 73	protein-coding
87259	chr16	69859751	69859850	+	0	NA	intron (NM_001270455, intron 6 of 8)	MLT1E2|LTR|ERVL-MaLR	21063	NM_001270453	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
198598	chr6	107714501	107714900	+	0	NA	intron (NM_001286409, intron 2 of 3)	MIRb|SINE|MIR	17450	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
230655	chr9	128699101	128699300	+	0	NA	Intergenic	AluSp|SINE|Alu	-3303	NM_013355	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
39921	chr11	62526751	62527050	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	18764	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
44216	chr11	96314151	96314750	+	0	NA	intron (NM_032427, intron 1 of 4)	X2_LINE|LINE|CR1	-26988	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
193916	chr6	31634301	31634900	+	0	NA	TTS (NR_106890)	TTS (NR_106890)	813	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
124115	chr19	55663921	55664450	+	0	NA	intron (NM_007279, intron 7 of 11)	intron (NM_007279, intron 7 of 11)	9150	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
208648	chr7	73023771	73024030	+	0	NA	intron (NM_001382563, intron 4 of 6)	intron (NM_001382563, intron 4 of 6)	4519	NM_001382563	105180390		NM_001382563	ENSG00000286038	SPDYE13	SPDYE13P	speedy/RINGO cell cycle regulator family member E13	protein-coding
201445	chr6	147530471	147530630	+	0	NA	intron (NM_001030060, intron 1 of 1)	intron (NM_001030060, intron 1 of 1)	21860	NM_001030060	389432		NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding
72671	chr15	38541001	38542150	+	0	NA	intron (NM_001128602, intron 2 of 15)	AluJb|SINE|Alu	23239	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
203767	chr7	1203751	1203850	+	0	NA	Intergenic	AluSq2|SINE|Alu	-29072	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
121932	chr19	48453701	48453900	+	0	NA	3' UTR (NM_031485, exon 7 of 7)	3' UTR (NM_031485, exon 7 of 7)	-1774	NM_013348	3770		NM_013348	ENSG00000182324	KCNJ14	IRK4|KIR2.4	potassium inwardly rectifying channel subfamily J member 14	protein-coding
133769	chr2	127648621	127648880	+	0	NA	promoter-TSS (NM_001256542)	promoter-TSS (NM_001256542)	-497	NM_001256542	55679		NM_017980	ENSG00000072163	LIMS2	LGMD2W|MDRCMTT|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
237862	chrX	130179571	130180130	+	0	NA	intron (NM_004794, intron 1 of 1)	intron (NM_004794, intron 1 of 1)	7888	NM_004794	9363		NM_004794	ENSG00000134594	RAB33A	RabS10	RAB33A, member RAS oncogene family	protein-coding
46754	chr11	129374221	129374700	+	0	NA	Intergenic	CpG	-1388	NM_003658	8538		NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
230905	chr9	129242001	129242200	+	0	NA	Intergenic	Intergenic	-40316	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
139674	chr2	226985471	226985630	+	0	NA	intron (NM_001349069, intron 8 of 8)	intron (NM_001349069, intron 8 of 8)	149496	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
18826	chr1	167661521	167662250	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	31653	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
184450	chr5	100049121	100049700	+	0	NA	Intergenic	Intergenic	338844	NR_027503	100133050		NR_027503		GUSBP19	-	GUSB pseudogene 19	pseudo
127813	chr2	44802421	44802680	+	0	NA	Intergenic	CpG	136338	NR_147194	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
15803	chr1	151287301	151288030	+	0	NA	exon (NM_001304764, exon 2 of 9)	exon (NM_001304764, exon 2 of 9)	5366	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
54602	chr12	92538971	92539680	+	0	NA	Intergenic	Intergenic	72646	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
79840	chr16	1445021	1445580	+	0	NA	promoter-TSS (NM_001143980)	promoter-TSS (NM_001143980)	-811	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
81394	chr16	5100621	5100880	+	0	NA	Intergenic	AluSc|SINE|Alu	-2930	NM_001289029	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
143090	chr20	23048571	23048750	+	0	NA	exon (NM_000361, exon 1 of 1)	exon (NM_000361, exon 1 of 1)	1012	NM_000361	7056		NM_000361	ENSG00000178726	THBD	AHUS6|BDCA-3|BDCA3|CD141|THPH12|THRM|TM	thrombomodulin	protein-coding
2074	chr1	7935401	7935600	+	0	NA	intron (NM_001561, intron 5 of 7)	MIRb|SINE|MIR	5339	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
169122	chr3	155852421	155852750	+	0	NA	intron (NM_001190992, intron 1 of 6)	intron (NM_001190992, intron 1 of 6)	1821	NM_001363883	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
164285	chr3	57589051	57589930	+	0	NA	intron (NM_001660, intron 1 of 5)	AluSg|SINE|Alu	7854	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
221039	chr8	116728501	116729100	+	0	NA	intron (NM_003756, intron 1 of 7)	MIRb|SINE|MIR	27023	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
139773	chr2	230217771	230217930	+	0	NA	intron (NM_001378444, intron 2 of 19)	intron (NM_001378444, intron 2 of 19)	2134	NM_001378443	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
138856	chr2	216666471	216666950	+	0	NA	Intergenic	Intergenic	7143	NM_001313990	3485		NM_000597	ENSG00000115457	IGFBP2	IBP2|IGF-BP53	insulin like growth factor binding protein 2	protein-coding
136570	chr2	177763571	177764080	+	0	NA	intron (NM_001077358, intron 9 of 18)	MER91A|DNA|hAT-Tip100	90503	NR_136171	105373764		NR_136171	ENSG00000229941	PDE11A-AS1	-	PDE11A antisense RNA 1	ncRNA
147455	chr20	59006651	59007730	+	0	NA	promoter-TSS (NM_001336)	promoter-TSS (NM_001336)	64	NM_001336	1522		NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
161133	chr3	38519471	38520400	+	0	NA	intron (NR_134938, intron 6 of 7)	intron (NR_134938, intron 6 of 7)	23595	NM_005107	9941		NM_005107	ENSG00000157036	EXOG	ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB	exo/endonuclease G	protein-coding
1396	chr1	2545451	2546600	+	0	NA	Intergenic	Intergenic	-10340	NM_001297605	8764		NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
153091	chr22	23433051	23433680	+	0	NA	promoter-TSS (NR_110538)	promoter-TSS (NR_110538)	-199	NR_110538	101929374		NR_110538	ENSG00000234928	LINC01659	-	long intergenic non-protein coding RNA 1659	ncRNA
113011	chr19	7914601	7915230	+	0	NA	promoter-TSS (NM_001195259)	promoter-TSS (NM_001195259)	85	NM_001195259	100507588		NM_001195259	ENSG00000260001	TGFBR3L	GEMP|TGFR-3L	transforming growth factor beta receptor 3 like	protein-coding
203510	chr7	651301	652600	+	0	NA	intron (NM_001164759, intron 4 of 10)	intron (NM_001164759, intron 4 of 10)	48552	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
131748	chr2	98455301	98456430	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	9855	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
31737	chr10	97739571	97739730	+	0	NA	intron (NM_001174122, intron 2 of 8)	L1MC5a|LINE|L1	1173	NM_001002261	118813		NM_144588	ENSG00000155256	ZFYVE27	PROTRUDIN|SPG33	zinc finger FYVE-type containing 27	protein-coding
119721	chr19	41204301	41204850	+	0	NA	intron (NM_030622, intron 7 of 8)	intron (NM_030622, intron 7 of 8)	11356	NM_030622	29785		NM_030622	ENSG00000167600	CYP2S1	CYPIIS1	cytochrome P450 family 2 subfamily S member 1	protein-coding
211359	chr7	104982321	104982780	+	0	NA	non-coding (NR_039981, exon 1 of 1)	non-coding (NR_039981, exon 1 of 1)	8615	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
206023	chr7	26398201	26399000	+	0	NA	promoter-TSS (NR_148499)	promoter-TSS (NR_148499)	31	NR_148503	441204		NR_015364	ENSG00000214870	LINC02981	-	long intergenic non-protein coding RNA 2981	ncRNA
74444	chr15	59482371	59483080	+	0	NA	intron (NM_152450, intron 3 of 8)	intron (NM_152450, intron 3 of 8)	44539	NM_152450	145773		NM_152450	ENSG00000157470	FAM81A	-	family with sequence similarity 81 member A	protein-coding
41362	chr11	65972401	65972800	+	0	NA	intron (NM_005146, intron 12 of 19)	AluJr4|SINE|Alu	10866	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
53212	chr12	62275451	62276250	+	0	NA	intron (NM_001351164, intron 1 of 21)	L2|LINE|L2	15446	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
146474	chr20	49775251	49775350	+	0	NA	Intergenic	Intergenic	-37413	NM_001260491	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
119677	chr19	40879171	40879530	+	0	NA	intron (NM_030589, intron 3 of 7)	intron (NM_030589, intron 3 of 7)	3402	NM_000764	1549		NM_000764	ENSG00000198077	CYP2A7	CPA7|CPAD|CYP2A|CYPIIA7|P450-IIA4	cytochrome P450 family 2 subfamily A member 7	protein-coding
15263	chr1	149640851	149641350	+	0	NA	intron (NR_111950, intron 1 of 8)	LTR2|LTR|ERV1	34088	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
96994	chr17	42281651	42282150	+	0	NA	Intergenic	Intergenic	-5509	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
70955	chr14	104685001	104685680	+	0	NA	Intergenic	Intergenic	-4266	NM_032714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
39503	chr11	61040721	61040980	+	0	NA	Intergenic	MER67B|LTR|ERV1	-53113	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
178830	chr4	153573721	153574650	+	0	NA	intron (NM_015196, intron 7 of 34)	intron (NM_015196, intron 7 of 34)	-65983	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
12340	chr1	101107601	101108080	+	0	NA	Intergenic	Intergenic	81994	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
44028	chr11	95088951	95091050	+	0	NA	exon (NM_015036, exon 1 of 2)	exon (NM_015036, exon 1 of 2)	154	NM_015036	23052		NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
181993	chr5	55226271	55226900	+	0	NA	exon (NM_001190787, exon 3 of 7)	exon (NM_001190787, exon 3 of 7)	730	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
65769	chr14	54436751	54437130	+	0	NA	intron (NM_005776, intron 1 of 4)	L2c|LINE|L2	4434	NM_005776	10175		NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family member 1	protein-coding
61761	chr13	74259271	74259950	+	0	NA	non-coding (NR_144451, exon 2 of 2)	non-coding (NR_144451, exon 2 of 2)	28166	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
165290	chr3	79017621	79018080	+	0	NA	intron (NM_002941, intron 3 of 30)	intron (NM_002941, intron 3 of 30)	1609	NM_133631	6091		NM_002941	ENSG00000169855	ROBO1	CPHD8|DUTT1|NORS|NYS8|SAX3	roundabout guidance receptor 1	protein-coding
137148	chr2	191063371	191063830	+	0	NA	intron (NM_003151, intron 8 of 23)	intron (NM_003151, intron 8 of 23)	42074	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
175168	chr4	55866371	55866600	+	0	NA	intron (NM_018261, intron 4 of 18)	intron (NM_018261, intron 4 of 18)	12835	NM_178237	55763		NM_018261	ENSG00000090989	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
65538	chr14	51920951	51921930	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-2869	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
143483	chr20	31065871	31066130	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-191664	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
19167	chr1	171783601	171783800	+	0	NA	intron (NM_001007239, intron 1 of 7)	intron (NM_001007239, intron 1 of 7)	2040	NM_014955	51603		NM_014955	ENSG00000010165	METTL13	5630401D24Rik|CGI-01|DFNB26|DFNB26M|DFNM1|EEF1AKNMT|KIAA0859|feat	methyltransferase 13, eEF1A N-terminus and K55	protein-coding
188292	chr5	151146371	151146730	+	0	NA	intron (NM_001363114, intron 2 of 24)	intron (NM_001363114, intron 2 of 24)	-4866	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
144776	chr20	36626121	36626680	+	0	NA	intron (NM_175077, intron 5 of 7)	AluSc|SINE|Alu	19796	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
233211	chr9	137226821	137228430	+	0	NA	5' UTR (NM_001190228, exon 1 of 3)	5' UTR (NM_001190228, exon 1 of 3)	123	NM_001190228	643596		NM_001190228	ENSG00000233198	RNF224	-	ring finger protein 224	protein-coding
167733	chr3	131360951	131361250	+	0	NA	promoter-TSS (NR_002949)	promoter-TSS (NR_002949)	-745	NR_002949	152195		NM_194289	ENSG00000293492	NUDT16L2P	NUDT16P|NUDT16P1	nudix hydrolase 16 like 2, pseudogene	pseudo
136758	chr2	181320571	181320930	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	-15098	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
117479	chr19	19775751	19776980	+	0	NA	promoter-TSS (NR_026956)	promoter-TSS (NR_026956)	48	NR_026956	284440		NM_182576		LINC00663	-	long intergenic non-protein coding RNA 663	ncRNA
216349	chr8	17013051	17013350	+	0	NA	Intergenic	Intergenic	-10855	NM_019851	26281		NM_019851	ENSG00000078579	FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
106271	chr18	12409851	12410480	+	0	NA	intron (NM_006553, intron 1 of 6)	L1MB7|LINE|L1	2236	NM_001142405	10650		NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
101354	chr17	67156851	67157280	+	0	NA	intron (NM_001330447, intron 17 of 32)	MSTB|LTR|ERVL-MaLR	-87711	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
5961	chr1	26903671	26903830	+	0	NA	Intergenic	AluY|SINE|Alu	-3283	NM_022078	63906		NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
159802	chr3	16334551	16335050	+	0	NA	intron (NM_015150, intron 7 of 9)	MLT1D|LTR|ERVL-MaLR	69588	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
40928	chr11	65259621	65260130	+	0	NA	Intergenic	MER58D|DNA|hAT-Charlie	-2087	NM_002689	23649		NM_002689	ENSG00000014138	POLA2	-	DNA polymerase alpha 2, accessory subunit	protein-coding
122105	chr19	48779621	48779880	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	24226	NM_019113	26291		NM_019113	ENSG00000105550	FGF21	-	fibroblast growth factor 21	protein-coding
74055	chr15	52528151	52529750	+	0	NA	promoter-TSS (NM_001142495)	promoter-TSS (NM_001142495)	-70	NM_001382349	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
177210	chr4	108420371	108420530	+	0	NA	Intergenic	L1MA5|LINE|L1	-136783	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
238353	chrX	149656471	149656630	+	0	NA	Intergenic	L1MC5a|LINE|L1	-24638	NM_001174092	84548		NM_032508	ENSG00000269556	TMEM185A	CXorf13|FAM11A|FRAXF|ee3	transmembrane protein 185A	protein-coding
223553	chr8	144233451	144233980	+	0	NA	intron (NM_032450, intron 14 of 43)	L1MB3|LINE|L1	29022	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
220867	chr8	103409451	103409750	+	0	NA	intron (NM_030780, intron 1 of 6)	L1ME4a|LINE|L1	5507	NM_030780	81034		NM_030780	ENSG00000164933	SLC25A32	GLYB|MFT|MFTC|RREI	solute carrier family 25 member 32	protein-coding
23789	chr1	233904751	233905280	+	0	NA	5' UTR (NM_173508, exon 1 of 8)	5' UTR (NM_173508, exon 1 of 8)	339	NM_173508	148641		NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
43606	chr11	83172201	83172800	+	0	NA	intron (NM_015885, intron 9 of 15)	AluSz|SINE|Alu	14984	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
237998	chrX	134792171	134792330	+	0	NA	intron (NM_001331092, intron 2 of 9)	intron (NM_001331092, intron 2 of 9)	4105	NM_001331094	159090		NM_145284	ENSG00000156504	PABIR2	FAM122B|SPACIA2	PABIR family member 2	protein-coding
76683	chr15	75732121	75732380	+	0	NA	intron (NR_024595, intron 3 of 4)	intron (NR_024595, intron 3 of 4)	7827	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
1464	chr1	2682801	2683200	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-49984	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
185420	chr5	130836651	130837100	+	0	NA	Intergenic	Intergenic	328381	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
227316	chr9	89433001	89433200	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	46790	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
60543	chr13	41464701	41467430	+	0	NA	intron (NM_014059, intron 2 of 4)	(AC)n|Simple_repeat|Simple_repeat	8515	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
206455	chr7	32889121	32889530	+	0	NA	intron (NM_015483, intron 1 of 3)	AluSg|SINE|Alu	2435	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
202048	chr6	153512201	153512400	+	0	NA	Intergenic	Intergenic	-381018	NM_012419	26575		NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G protein signaling 17	protein-coding
87317	chr16	70232221	70232500	+	0	NA	Intergenic	Intergenic	-6327	NR_033959	100506060		NR_033959	ENSG00000261556	SMG1P7	-	SMG1 pseudogene 7	pseudo
107850	chr18	54392601	54392880	+	0	NA	Intergenic	Intergenic	34823	NR_110234	162681		NM_173529	ENSG00000166845	C18orf54	LAS2	chromosome 18 open reading frame 54	protein-coding
167634	chr3	129599421	129599700	+	0	NA	intron (NM_015103, intron 1 of 35)	L3|LINE|CR1	7116	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
224369	chr9	7798951	7800080	+	0	NA	exon (NM_001318058, exon 1 of 2)	exon (NM_001318058, exon 1 of 2)	263	NM_033428	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
79910	chr16	1679771	1680350	+	0	NA	intron (NM_144570, intron 1 of 4)	AluYm1|SINE|Alu	1781	NM_144570	90861		NM_144570	ENSG00000206053	JPT2	C16orf34|HN1L|L11	Jupiter microtubule associated homolog 2	protein-coding
45000	chr11	116990351	116991050	+	0	NA	intron (NM_001281748, intron 1 of 24)	L2|LINE|L2	107728	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
168422	chr3	142444221	142444800	+	0	NA	intron (NM_019001, intron 1 of 41)	AluSz6|SINE|Alu	3527	NM_019001	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
180540	chr5	14599821	14600080	+	0	NA	intron (NM_019018, intron 1 of 7)	intron (NM_019018, intron 1 of 7)	18158	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
147023	chr20	53593301	53595630	+	0	NA	promoter-TSS (NM_001385034)	promoter-TSS (NM_001385034)	-626	NM_006526	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
70437	chr14	102043851	102044150	+	0	NA	exon (NM_001376, exon 70 of 78)	exon (NM_001376, exon 70 of 78)	43044	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
52681	chr12	56464121	56465400	+	0	NA	Intergenic	AluSz|SINE|Alu	-3818	NM_207344	283377		NM_207344	ENSG00000176422	SPRYD4	-	SPRY domain containing 4	protein-coding
2848	chr1	11270701	11271030	+	0	NA	Intergenic	AluY|SINE|Alu	-2333	NM_001330350	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
222737	chr8	141400371	141400930	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	8629	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
170135	chr3	183377821	183378280	+	0	NA	intron (NM_015078, intron 3 of 29)	intron (NM_015078, intron 3 of 29)	50219	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
121511	chr19	47188751	47189150	+	0	NA	intron (NM_001145713, intron 6 of 6)	intron (NM_001145713, intron 6 of 6)	-37992	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
92288	chr17	8086401	8086600	+	0	NA	intron (NM_001139, intron 1 of 14)	intron (NM_001139, intron 1 of 14)	1216	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
193812	chr6	31462001	31466700	+	0	NA	non-coding (NR_040662, exon 2 of 2).3	non-coding (NR_040662, exon 2 of 2).3	1170	NR_040662	10866		NR_040662	ENSG00000206337	HCP5	6S2650E|D6S2650E|P5-1	HLA complex P5	ncRNA
120109	chr19	42176301	42177900	+	0	NA	Intergenic	Intergenic	40577	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
53724	chr12	68624451	68625180	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluSz|SINE|Alu	2560	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
48347	chr12	9342721	9342980	+	0	NA	Intergenic	Intergenic	-24614	NR_120479	101930452		NR_120479	ENSG00000260423	LINC02367	-	long intergenic non-protein coding RNA 2367	ncRNA
6071	chr1	27150271	27150430	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	4775	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
57526	chr12	122137221	122137480	+	0	NA	intron (NM_014938, intron 11 of 16)	intron (NM_014938, intron 11 of 16)	-30369	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
3958	chr1	18641451	18641750	+	0	NA	intron (NM_001135254, intron 4 of 8)	CpG	10754	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
213539	chr7	139092401	139092830	+	0	NA	intron (NM_020119, intron 1 of 12)	intron (NM_020119, intron 1 of 12)	17105	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
104917	chr17	81909171	81909780	+	0	NA	intron (NM_001256435, intron 2 of 12)	intron (NM_001256435, intron 2 of 12)	1700	NM_001282204	5833		NM_002861	ENSG00000185813	PCYT2	ET|SPG82	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
238059	chrX	135544001	135544680	+	0	NA	intron (NM_001351601, intron 2 of 17)	intron (NM_001351601, intron 2 of 17)	-23666	NR_046740	100874118		NR_046740	ENSG00000225235	INTS6L-AS1	DDX26B-AS1	INTS6L antisense RNA 1	ncRNA
108057	chr18	59783171	59783330	+	0	NA	Intergenic	Intergenic	-85827	NM_133459	147372		NM_133459	ENSG00000183287	CCBE1	HKLLS1	collagen and calcium binding EGF domains 1	protein-coding
191365	chr6	7263271	7263430	+	0	NA	Intergenic	Intergenic	49849	NM_003144	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
16698	chr1	155211921	155212180	+	0	NA	intron (NM_198883, intron 3 of 6)	intron (NM_198883, intron 3 of 6)	3351	NM_002455	4580		NM_002455	ENSG00000173171	MTX1	MTX|MTXN	metaxin 1	protein-coding
148275	chr20	63692401	63692800	+	0	NA	intron (NM_032957, intron 28 of 34)	intron (NM_032957, intron 28 of 34)	-4052	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
234919	chrX	37573121	37573430	+	0	NA	intron (NM_198511, intron 1 of 5)	intron (NM_198511, intron 1 of 5)	1614	NM_198511	347404		NM_198511	ENSG00000147036	LANCL3	-	LanC like family member 3	protein-coding
121836	chr19	48152351	48152930	+	0	NA	intron (NR_135500, intron 5 of 27)	MER119|DNA|hAT-Charlie	17704	NR_135497	3978		NM_000234	ENSG00000105486	LIG1	IMD96|LIGI|hLig1	DNA ligase 1	protein-coding
166888	chr3	124559701	124560180	+	0	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-24718	NM_001322993	8997		NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|KALNC2|TRAD	kalirin RhoGEF kinase	protein-coding
24166	chr1	235871871	235872030	+	0	NA	intron (NM_001301365, intron 1 of 52)	MER39|LTR|ERV1	-5044	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
150740	chr21	43760751	43761050	+	0	NA	3' UTR (NM_003681, exon 11 of 11)	3' UTR (NM_003681, exon 11 of 11)	15408	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
116324	chr19	17826621	17827230	+	0	NA	intron (NM_000215, intron 23 of 23)	intron (NM_000215, intron 23 of 23)	-5406	NM_001265587	3640		NM_005543	ENSG00000248099	INSL3	RLF|RLNL|ley-I-L	insulin like 3	protein-coding
237966	chrX	133776171	133776400	+	0	NA	intron (NM_001164619, intron 1 of 6)	intron (NM_001164619, intron 1 of 6)	-121158	NR_148713	110806308		NR_148713	ENSG00000286096	GPC3-AS1	-	GPC3 antisense RNA 1	ncRNA
147329	chr20	58172071	58172230	+	0	NA	Intergenic	Intergenic	21248	NM_178456	128602		NM_178456	ENSG00000124237	CIMIP1	C20orf85|LLC1|bA196N14.1	ciliary microtubule inner protein 1	protein-coding
140741	chr2	234474971	234475550	+	0	NA	Intergenic	MIRb|SINE|MIR	-20665	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
92939	chr17	16987871	16988630	+	0	NA	promoter-TSS (NR_146886)	promoter-TSS (NR_146886)	-79	NR_146886	105371562		NR_146886	ENSG00000230969	LINC02090	-	long intergenic non-protein coding RNA 2090	ncRNA
180273	chr5	1795171	1795480	+	0	NA	Intergenic	Intergenic	4512	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
102582	chr17	75880021	75880280	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-1569	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
128581	chr2	60909601	60909900	+	0	NA	intron (NM_001291746, intron 4 of 9)	AluSc|SINE|Alu	28176	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133381	chr2	118087851	118088900	+	0	NA	promoter-TSS (NM_016133)	promoter-TSS (NM_016133)	-43	NM_001321331	51141		NM_016133	ENSG00000125629	INSIG2	INSIG-2	insulin induced gene 2	protein-coding
75311	chr15	65294371	65294730	+	0	NA	Intergenic	L1MB4|LINE|L1	-1501	NR_002756	26831		NR_002756	ENSG00000199568	RNU5A-1	RNU5|RNU5A|RNU5C|U5A|U5B1	RNA, U5A small nuclear 1	snRNA
132228	chr2	102301821	102302200	+	0	NA	Intergenic	L1MEc|LINE|L1	-9492	NM_001282408	9173		NM_003856	ENSG00000115602	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor like 1	protein-coding
71319	chr14	105395071	105395230	+	0	NA	3' UTR (NM_015197, exon 24 of 24)	3' UTR (NM_015197, exon 24 of 24)	-3388	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
32511	chr10	102772271	102772650	+	0	NA	intron (NM_001083913, intron 1 of 3)	AluSx|SINE|Alu	-3761	NM_017787	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
201702	chr6	149703471	149703830	+	0	NA	intron (NM_001350339, intron 1 of 9)	FLAM_C|SINE|Alu	12775	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
224063	chr9	3585851	3586150	+	0	NA	Intergenic	CR1-12_AMi|LINE|CR1	-59999	NM_134428	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
225465	chr9	35489521	35490400	+	0	NA	promoter-TSS (NM_014806)	promoter-TSS (NM_014806)	-151	NR_052015	9853		NM_014806	ENSG00000198853	RUSC2	Iporin|MRT61	RUN and SH3 domain containing 2	protein-coding
164169	chr3	56787201	56788450	+	0	NA	intron (NM_001289698, intron 2 of 10)	MIRb|SINE|MIR	-12108	NM_001377413	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
172139	chr4	1194251	1194350	+	0	NA	intron (NM_001199021, intron 1 of 7)	intron (NM_001199021, intron 1 of 7)	14662	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
167116	chr3	127670851	127671100	+	0	NA	intron (NM_015720, intron 6 of 7)	intron (NM_015720, intron 6 of 7)	-1963	NM_032548	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
49072	chr12	14418471	14419080	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	33494	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
218628	chr8	56202271	56202500	+	0	NA	intron (NM_002655, intron 1 of 4)	intron (NM_002655, intron 1 of 4)	8888	NM_001114635	5324		NM_002655	ENSG00000181690	PLAG1	PSA|SGPA|SRS4|ZNF912	PLAG1 zinc finger	protein-coding
95422	chr17	36095901	36096100	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5857	NM_002983	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
211425	chr7	105056951	105057830	+	0	NA	intron (NM_182931, intron 3 of 26)	L1MC5a|LINE|L1	43185	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
134012	chr2	131033351	131034130	+	0	NA	intron (NM_001375904, intron 2 of 10)	intron (NM_001375904, intron 2 of 10)	59422	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
138952	chr2	218255001	218255780	+	0	NA	Intergenic	L1MD2|LINE|L1	-4106	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
80392	chr16	2555321	2555580	+	0	NA	intron (NM_031268, intron 1 of 10)	AluJb|SINE|Alu	17429	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
188127	chr5	150392221	150393080	+	0	NA	intron (NM_001195141, intron 20 of 25)	intron (NM_001195141, intron 20 of 25)	20106	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
17152	chr1	156197901	156198100	+	0	NA	intron (NR_104408, intron 2 of 3)	intron (NR_104408, intron 2 of 3)	3896	NM_001286184	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
94162	chr17	28369571	28370350	+	0	NA	exon (NM_000638, exon 2 of 8)	exon (NM_000638, exon 2 of 8)	347	NM_000638	7448		NM_000638	ENSG00000109072	VTN	V75|VN|VNT	vitronectin	protein-coding
7660	chr1	35703021	35703280	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	13761	NM_001348691	127703		NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
88684	chr16	85750921	85751600	+	0	NA	promoter-TSS (NM_206967)	promoter-TSS (NM_206967)	-164	NR_161453	404550		NM_206967	ENSG00000154102	C16orf74	-	chromosome 16 open reading frame 74	protein-coding
109741	chr19	1104501	1106430	+	0	NA	exon (NM_002085, exon 3 of 7)	exon (NM_002085, exon 3 of 7)	815	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
138602	chr2	208256451	208256950	+	0	NA	TTS (NR_046452)	TTS (NR_046452)	1467	NR_046452	100507475		NR_046452	ENSG00000231908	IDH1-AS1	-	IDH1 antisense RNA 1	ncRNA
225572	chr9	35971921	35972380	+	0	NA	Intergenic	CpG	-13996	NM_019897	56656		NM_019897	ENSG00000278889	OR2S2	OR37A|OST715	olfactory receptor family 2 subfamily S member 2	protein-coding
146102	chr20	47695301	47695500	+	0	NA	intron (NM_198596, intron 4 of 20)	L1MB1|LINE|L1	90664	NM_018837	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
216043	chr8	9658001	9658200	+	0	NA	intron (NM_003747, intron 3 of 26)	SVA_F|Retroposon|SVA	-83572	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
121497	chr19	47156101	47156300	+	0	NA	intron (NR_027280, intron 5 of 8)	AluJr|SINE|Alu	25365	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
40364	chr11	63983251	63983550	+	0	NA	Intergenic	AluSg4|SINE|Alu	-2453	NR_003089	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
220438	chr8	100307501	100307980	+	0	NA	intron (NM_001280539, intron 2 of 10)	intron (NM_001280539, intron 2 of 10)	1635	NM_001353838	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
175196	chr4	56548771	56548930	+	0	NA	intron (NM_001256475, intron 2 of 8)	intron (NM_001256475, intron 2 of 8)	18244	NM_001256475	100506564		NM_001256475	ENSG00000249693	SPMAP2L	THEGL	sperm microtubule associated protein 2 like	protein-coding
93247	chr17	17935951	17936050	+	0	NA	intron (NM_001082968, intron 1 of 14)	L2c|LINE|L2	36400	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
208254	chr7	65572351	65572950	+	0	NA	Intergenic	L2a|LINE|L2	-17585	NR_157838	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
212202	chr7	118182321	118182580	+	0	NA	Intergenic	AluSc|SINE|Alu	-1714	NM_016200	51691		NM_016200	ENSG00000128534	LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding
177037	chr4	107718571	107718730	+	0	NA	intron (NM_005443, intron 1 of 11)	intron (NM_005443, intron 1 of 11)	1584	NM_005443	9061		NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
25426	chr10	6571901	6572500	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	8076	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
36528	chr11	6483251	6483630	+	0	NA	3' UTR (NM_012192, exon 3 of 3)	3' UTR (NM_012192, exon 3 of 3)	1939	NM_012192	26515		NM_012192	ENSG00000132286	TIMM10B	FXC1|TIM10B|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding
28403	chr10	47708071	47708380	+	0	NA	intron (NR_160661, intron 1 of 6)	AluJb|SINE|Alu	2164	NR_160660	439965		NR_027634		SHLD2P3	FAM35B2|FAM35DP	shieldin complex subunit 2 pseudogene 3	pseudo
127286	chr2	38734411	38735300	+	0	NA	TTS (NM_138801)	TTS (NM_138801)	16506	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
56900	chr12	120361171	120361330	+	0	NA	intron (NM_002442, intron 6 of 14)	intron (NM_002442, intron 6 of 14)	7914	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
122564	chr19	49665201	49666700	+	0	NA	promoter-TSS (NM_001197122)	promoter-TSS (NM_001197122)	17	NM_138639	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
131253	chr2	96024451	96025000	+	0	NA	intron (NM_001321525, intron 14 of 21)	intron (NM_001321525, intron 14 of 21)	10520	NM_001321530	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
154478	chr22	35627271	35628100	+	0	NA	Intergenic	Intergenic	-4331	NM_001382809	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
30477	chr10	79241871	79243200	+	0	NA	intron (NM_020338, intron 7 of 24)	CpG	-104934	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
98414	chr17	46625201	46625400	+	0	NA	intron (NR_040116, intron 2 of 19).2	intron (NR_040116, intron 2 of 19).2	34566	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
73346	chr15	42107571	42107730	+	0	NA	Intergenic	Intergenic	-13088	NM_178034	283748		NM_178034	ENSG00000159337	PLA2G4D	cPLA2delta	phospholipase A2 group IVD	protein-coding
77660	chr15	85542801	85543000	+	0	NA	intron (NM_007200, intron 4 of 36)	MIRb|SINE|MIR	-77050	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
237612	chrX	123983701	123984100	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	22194	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
123477	chr19	54169501	54169950	+	0	NA	intron (NM_144686, intron 2 of 14).4	L1ME3A|LINE|L1	3435	NM_001145303	147798		NM_144686	ENSG00000167608	TMC4	-	transmembrane channel like 4	protein-coding
171300	chr3	195953741	195955680	+	0	NA	Intergenic	Intergenic	35569	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
191957	chr6	16138051	16138730	+	0	NA	intron (NM_013262, intron 2 of 6)	intron (NM_013262, intron 2 of 6)	-3166	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
126419	chr2	27717071	27717250	+	0	NA	intron (NR_160725, intron 2 of 2)	intron (NR_160725, intron 2 of 2)	1037	NR_160725	105374378		NR_160725		LOC105374378	-	uncharacterized LOC105374378	ncRNA
173053	chr4	5712421	5712680	+	0	NA	intron (NM_153717, intron 1 of 20)	intron (NM_153717, intron 1 of 20)	1349	NM_001306092	2121		NM_014556	ENSG00000072840	EVC	DWF-1|EVC1|EVCL	EvC ciliary complex subunit 1	protein-coding
25648	chr10	8270151	8270250	+	0	NA	Intergenic	AluJb|SINE|Alu	-1895	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
11960	chr1	93995971	93996130	+	0	NA	intron (NM_000350, intron 49 of 49)	intron (NM_000350, intron 49 of 49)	-86452	NM_001308253	2730		NM_002061	ENSG00000023909	GCLM	GLCLR	glutamate-cysteine ligase modifier subunit	protein-coding
68269	chr14	77043321	77044130	+	0	NA	intron (NR_110554, intron 1 of 3)	intron (NR_110554, intron 1 of 3)	2676	NR_110554	283575		NR_110554	ENSG00000246548	LINC02288	-	long intergenic non-protein coding RNA 2288	ncRNA
127764	chr2	44087001	44087900	+	0	NA	Intergenic	Intergenic	-81353	NM_177969	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
77695	chr15	85655321	85655580	+	0	NA	exon (NM_001270546, exon 4 of 29)	exon (NM_001270546, exon 4 of 29)	35500	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
113005	chr19	7907821	7909400	+	0	NA	intron (NM_001297555, intron 2 of 11)	intron (NM_001297555, intron 2 of 11)	4733	NM_145185	5609		NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
5796	chr1	26551851	26552530	+	0	NA	intron (NM_001006665, intron 5 of 20)	AluSc5|SINE|Alu	-2352	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
89741	chr16	89438171	89438330	+	0	NA	intron (NR_110932, intron 1 of 2)	L1M5|LINE|L1	7332	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
18763	chr1	167502871	167503280	+	0	NA	intron (NM_001378515, intron 1 of 8)	LTR16C|LTR|ERVL	15454	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
109412	chr19	684651	685030	+	0	NA	TTS (NM_001308209)	TTS (NM_001308209)	8448	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
62667	chr13	102594421	102595400	+	0	NA	Intergenic	AluSx|SINE|Alu	-2076	NM_003291	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
191607	chr6	12110271	12110900	+	0	NA	intron (NM_002114, intron 3 of 8)	Tigger1|DNA|TcMar-Tigger	98273	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
221206	chr8	120802551	120802850	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	9346	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
194087	chr6	31895071	31895500	+	0	NA	intron (NM_001318833, intron 3 of 27).6	LTR23|LTR|ERV1	1704	NM_001318833	10919		NM_006709	ENSG00000204371	EHMT2	BAT8|C6orf30|G9A|GAT8|KMT1C|NG36	euchromatic histone lysine methyltransferase 2	protein-coding
119858	chr19	41430801	41431000	+	0	NA	TTS (NM_001320841)	TTS (NM_001320841)	-2170	NM_198540	374907		NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
46122	chr11	122983671	122983830	+	0	NA	Intergenic	Intergenic	-1916	NM_001098169	390259		NM_001098169	ENSG00000188909	BSX	BSX1	brain specific homeobox	protein-coding
177804	chr4	123415921	123416500	+	0	NA	Intergenic	Intergenic	16670	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
11995	chr1	94962571	94963250	+	0	NA	intron (NR_168376, intron 3 of 3)	intron (NR_168376, intron 3 of 3)	34882	NR_033998	729970		NR_033998		CNN3-DT	-	CNN3 divergent transcript	ncRNA
216376	chr8	17800551	17801650	+	0	NA	promoter-TSS (NM_001363057)	promoter-TSS (NM_001363057)	-6	NM_001363057	57509		NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1	microtubule associated scaffold protein 1	protein-coding
117446	chr19	19666171	19666780	+	0	NA	Intergenic	AluSg4|SINE|Alu	-1678	NM_001300949	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
62378	chr13	99248121	99248580	+	0	NA	intron (NR_026644, intron 4 of 8)	AluJr|SINE|Alu	10078	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
44398	chr11	103109001	103110500	+	0	NA	exon (NM_001080463, exon 1 of 90)	exon (NM_001080463, exon 1 of 90)	324	NM_001080463	79659		NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding
205129	chr7	7059951	7060580	+	0	NA	Intergenic	SATR1|Satellite|Satellite	6780	NR_037454	100500886		NR_037454	ENSG00000266287	MIR3683	-	microRNA 3683	ncRNA
135127	chr2	157427551	157428000	+	0	NA	intron (NM_004288, intron 5 of 7)	L2b|LINE|L2	16314	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
144749	chr20	36598401	36598800	+	0	NA	intron (NM_001199535, intron 2 of 4)	intron (NM_001199535, intron 2 of 4)	-7179	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
185952	chr5	133025271	133025500	+	0	NA	intron (NM_001308127, intron 1 of 4)	AluY|SINE|Alu	1164	NM_001300818	54819		NM_017665	ENSG00000155329	ZCCHC10	-	zinc finger CCHC-type containing 10	protein-coding
42812	chr11	72820671	72820830	+	0	NA	intron (NM_033388, intron 3 of 17)	intron (NM_033388, intron 3 of 17)	6339	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
27077	chr10	27239521	27241400	+	0	NA	promoter-TSS (NM_001301252)	promoter-TSS (NM_001301252)	26	NM_001301252	91452		NM_145698	ENSG00000107897	ACBD5	RDLKD	acyl-CoA binding domain containing 5	protein-coding
160161	chr3	20340371	20340600	+	0	NA	Intergenic	Intergenic	-1983	NR_110814	101927829		NR_110814	ENSG00000231304	LOC101927829	-	uncharacterized LOC101927829	ncRNA
20633	chr1	199218071	199218680	+	0	NA	intron (NR_147896, intron 3 of 3)	L1PA13|LINE|L1	69777	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
168600	chr3	149223871	149224280	+	0	NA	Intergenic	Intergenic	-2246	NM_000096	1356		NM_000096	ENSG00000047457	CP	AB073614|CP-2	ceruloplasmin	protein-coding
71117	chr14	104929771	104930130	+	0	NA	intron (NM_001308174, intron 5 of 10)	MIR|SINE|MIR	5071	NM_001308174	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
112832	chr19	7528271	7528430	+	0	NA	intron (NM_020533, intron 7 of 13)	intron (NM_020533, intron 7 of 13)	5726	NM_020533	57192		NM_020533	ENSG00000090674	MCOLN1	LECD|MG-2|ML1|ML4|MLIV|MST080|MSTP080|TRP-ML1|TRPM-L1|TRPML1	mucolipin TRP cation channel 1	protein-coding
51787	chr12	53365551	53365850	+	0	NA	Intergenic	Intergenic	-14476	NM_001251825	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
124101	chr19	55651601	55651800	+	0	NA	intron (NM_001370467, intron 5 of 5)	AluY|SINE|Alu	-3335	NM_007279	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
114154	chr19	11341971	11342330	+	0	NA	TTS (NM_198536)	TTS (NM_198536)	-2493	NM_004283	9545		NM_004283	ENSG00000105514	RAB3D	D2-2|GOV|RAB16|RAD3D	RAB3D, member RAS oncogene family	protein-coding
198709	chr6	108163421	108164130	+	0	NA	Intergenic	Intergenic	-2247	NM_003269	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
8250	chr1	39769471	39769700	+	0	NA	TTS (NM_022120)	TTS (NM_022120)	1763	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
185602	chr5	131414001	131414780	+	0	NA	Intergenic	Intergenic	150337	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
86956	chr16	68123701	68124330	+	0	NA	intron (NM_173165, intron 2 of 9)	intron (NM_173165, intron 2 of 9)	38645	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
158323	chr22	50437621	50438080	+	0	NA	exon (NM_001365836, exon 19 of 26)	exon (NM_001365836, exon 19 of 26)	30408	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
110762	chr19	2384821	2385700	+	0	NA	promoter-TSS (NM_182973)	promoter-TSS (NM_182973)	-5	NM_182973	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
26487	chr10	17706071	17706430	+	0	NA	intron (NM_001324289, intron 12 of 13)	intron (NM_001324289, intron 12 of 13)	-45951	NM_001098844	653567		NM_001013629	ENSG00000148483	TMEM236	FAM23A|FAM23B|bA162I21.2|bA16O1.2	transmembrane protein 236	protein-coding
107782	chr18	51072001	51072200	+	0	NA	intron (NM_005359, intron 10 of 11)	L1MB8|LINE|L1	41887	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
158247	chr22	50302801	50303200	+	0	NA	intron (NM_001376879, intron 1 of 38)	intron (NM_001376879, intron 1 of 38)	821	NM_001376882	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
89978	chr16	89835451	89835750	+	0	NA	intron (NM_032451, intron 1 of 14)	intron (NM_032451, intron 1 of 14)	7125	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
140412	chr2	233101951	233102950	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	42108	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
48149	chr12	7921921	7922850	+	0	NA	intron (NM_006931, intron 9 of 9)	MER44D|DNA|TcMar-Tigger	13802	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
164010	chr3	53171501	53171830	+	0	NA	intron (NM_001354676, intron 1 of 17)	L2c|LINE|L2	2962	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
127663	chr2	43168121	43169600	+	0	NA	Intergenic	Intergenic	57746	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
168950	chr3	152374351	152374900	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-33635	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
133887	chr2	130149721	130149980	+	0	NA	Intergenic	AluJr|SINE|Alu	-4738	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
230911	chr9	129261921	129262180	+	0	NA	Intergenic	Intergenic	-20366	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
203889	chr7	1484101	1484330	+	0	NA	intron (NM_001080453, intron 24 of 47)	CpG-25345	20174	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
50462	chr12	47748351	47748650	+	0	NA	exon (NM_001098531, exon 12 of 28)	exon (NM_001098531, exon 12 of 28)	9898	NM_001098532	10411		NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
220361	chr8	99714871	99715500	+	0	NA	intron (NM_152564, intron 36 of 61)	intron (NM_152564, intron 36 of 61)	-178324	NR_030596	100126309		NR_030596	ENSG00000216069	MIR875	MIRN875|hsa-mir-875	microRNA 875	ncRNA
4634	chr1	22120571	22120730	+	0	NA	intron (NM_030761, intron 4 of 4)	intron (NM_030761, intron 4 of 4)	22447	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
97031	chr17	42311371	42311530	+	0	NA	3' UTR (NM_001288720, exon 18 of 18)	3' UTR (NM_001288720, exon 18 of 18)	23394	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
80022	chr16	1933151	1933650	+	0	NA	Intergenic	Intergenic	9799	NM_016332	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
128306	chr2	54639671	54639830	+	0	NA	intron (NM_178313, intron 17 of 30)	intron (NM_178313, intron 17 of 30)	81356	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
133506	chr2	119975301	119975500	+	0	NA	intron (NM_002830, intron 26 of 26)	AluJr|SINE|Alu	-37677	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
21506	chr1	205748471	205749900	+	0	NA	intron (NM_022731, intron 1 of 6)	CpG	997	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
44156	chr11	96198571	96198830	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-142738	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
205994	chr7	26191551	26191730	+	0	NA	3' UTR (NM_031243, exon 12 of 12)	3' UTR (NM_031243, exon 12 of 12)	9106	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
22102	chr1	211625121	211625380	+	0	NA	Intergenic	HAL1ME|LINE|L1	-14558	NR_131925	105748977		NR_131925	ENSG00000227764	NTRAS	LINC01693	non-coding transcript regulating alternative splicing	ncRNA
87119	chr16	68760801	68761000	+	0	NA	intron (NM_004360, intron 2 of 15)	intron (NM_004360, intron 2 of 15)	23608	NM_001317185	999		NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
135292	chr2	160208051	160208350	+	0	NA	Intergenic	Intergenic	-7887	NM_001282354	3694		NM_000888	ENSG00000115221	ITGB6	AI1H	integrin subunit beta 6	protein-coding
227537	chr9	91714371	91714600	+	0	NA	Intergenic	CpG	-78140	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
158029	chr22	49922571	49922930	+	0	NA	intron (NM_001284317, intron 6 of 8)	intron (NM_001284317, intron 6 of 8)	4116	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
175072	chr4	54062671	54063030	+	0	NA	intron (NM_012110, intron 1 of 5)	intron (NM_012110, intron 1 of 5)	1755	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
189969	chr5	177440051	177441150	+	0	NA	intron (NR_038916, intron 1 of 2)	intron (NR_038916, intron 1 of 2)	-5395	NM_001375593	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
84922	chr16	31230901	31231500	+	0	NA	3' UTR (NM_001008274, exon 7 of 7)	3' UTR (NM_001008274, exon 7 of 7)	-14065	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
173359	chr4	7852701	7853300	+	0	NA	intron (NM_001371091, intron 5 of 17)	ERVL-E-int|LTR|ERVL	19308	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
194314	chr6	32829501	32829930	+	0	NA	intron (NM_000544, intron 10 of 11)	intron (NM_000544, intron 10 of 11)	9024	NM_001290043	6891		NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
164237	chr3	57007521	57007780	+	0	NA	intron (NM_001377410, intron 1 of 12)	intron (NM_001377410, intron 1 of 12)	-53014	NM_181727	353324		NM_181727	ENSG00000186451	SPATA12	SRG5	spermatogenesis associated 12	protein-coding
84893	chr16	31199301	31199970	+	0	NA	Intergenic	Intergenic	-2250	NR_102400	100652740		NR_102400	ENSG00000261359	PYCARD-AS1	C16orf98|PYCARDOS	PYCARD antisense RNA 1	ncRNA
172267	chr4	1414201	1414400	+	0	NA	Intergenic	CpG	-7858	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
186984	chr5	139703651	139704630	+	0	NA	Intergenic	Intergenic	28697	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
72209	chr15	30174671	30174900	+	0	NA	Intergenic	MIRb|SINE|MIR	-21251	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
92106	chr17	7578151	7578300	+	0	NA	TTS (NR_002912)	TTS (NR_002912)	270	NR_002912	26781		NR_002912	ENSG00000277985	SNORA67	RNU67|U67	small nucleolar RNA, H/ACA box 67	snoRNA
138420	chr2	205612721	205613030	+	0	NA	intron (NM_205863, intron 21 of 21)	intron (NM_205863, intron 21 of 21)	-69625	NM_201264	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
78607	chr15	93242771	93243330	+	0	NA	Intergenic	Intergenic	36984	NM_001365393								
190883	chr6	2563751	2563850	+	0	NA	Intergenic	Intergenic	-70700	NR_149119	105374885		NR_149118		LINC02521	-	long intergenic non-protein coding RNA 2521	ncRNA
91502	chr17	4937751	4938300	+	0	NA	exon (NM_001165418, exon 6 of 7)	exon (NM_001165418, exon 6 of 7)	2021	NM_003562	8402		NM_003562	ENSG00000108528	SLC25A11	OGC|PGL6|PPGL6|SLC20A4	solute carrier family 25 member 11	protein-coding
163757	chr3	52364221	52364680	+	0	NA	intron (NM_015512, intron 32 of 77)	L2c|LINE|L2	45558	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
19369	chr1	173885971	173886130	+	0	NA	exon (NM_001122770, exon 5 of 5)	exon (NM_001122770, exon 5 of 5)	-17168	NR_152521	60674		NR_002578	ENSG00000234741	GAS5	NCRNA00030|SNHG2	growth arrest specific 5	ncRNA
105144	chr17	82245471	82246200	+	0	NA	intron (NM_001893, intron 8 of 8)	intron (NM_001893, intron 8 of 8)	9167	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
82583	chr16	18788771	18789230	+	0	NA	exon (NM_001030009, exon 2 of 5)	exon (NM_001030009, exon 2 of 5)	1334	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
96068	chr17	39596821	39597250	+	0	NA	Intergenic	Intergenic	10885	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
174563	chr4	40222771	40222930	+	0	NA	intron (NM_001278360, intron 2 of 3)	Tigger1|DNA|TcMar-Tigger	25819	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
183973	chr5	88689571	88690200	+	0	NA	intron (NR_146284, intron 1 of 3)	CpG	1156	NR_152233	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
99629	chr17	50568101	50569130	+	0	NA	intron (NM_198376, intron 1 of 34)	MIRc|SINE|MIR	-6507	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
162533	chr3	48611921	48612380	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2504	NM_003365	7384		NM_003365	ENSG00000010256	UQCRC1	D3S3191|PKNPY|QCR1|UQCR1	ubiquinol-cytochrome c reductase core protein 1	protein-coding
199095	chr6	111669351	111669450	+	0	NA	intron (NM_001370529, intron 11 of 11)	AluSx1|SINE|Alu	-63126	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
63220	chr13	113862221	113862500	+	0	NA	intron (NM_000820, intron 2 of 14)	intron (NM_000820, intron 2 of 14)	1716	NM_000820	2621		NM_000820	ENSG00000183087	GAS6	AXLLG|AXSF	growth arrest specific 6	protein-coding
20354	chr1	197911601	197912000	+	0	NA	promoter-TSS (NM_001014434)	promoter-TSS (NM_001014434)	-705	NM_001014434	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
184826	chr5	111302421	111302770	+	0	NA	intron (NM_001744, intron 1 of 10)	L1HS|LINE|L1	78211	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
198631	chr6	107786001	107786480	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	38073	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
237809	chrX	129936671	129937050	+	0	NA	Intergenic	Intergenic	30696	NM_006649	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
107807	chr18	51192701	51193200	+	0	NA	intron (NM_016626, intron 1 of 1)	intron (NM_016626, intron 1 of 1)	4731	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
72925	chr15	40403401	40404100	+	0	NA	Intergenic	Intergenic	-2045	NM_002225	3712		NM_002225	ENSG00000128928	IVD	ACAD2|IVDH	isovaleryl-CoA dehydrogenase	protein-coding
94908	chr17	31841551	31841850	+	0	NA	Intergenic	AluSx1|SINE|Alu	17262	NM_001330176	55352		NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
26039	chr10	12358971	12359530	+	0	NA	intron (NM_153498, intron 1 of 10)	MIRb|SINE|MIR	9703	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
155606	chr22	38807301	38807900	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-13457	NM_005740	10126		NM_005740	ENSG00000100246	DNAL4	MRMV3|PIG27	dynein axonemal light chain 4	protein-coding
204634	chr7	5400601	5401100	+	0	NA	intron (NM_001080495, intron 2 of 29)	AluJo|SINE|Alu	22696	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
98889	chr17	48576621	48577030	+	0	NA	exon (NM_024015, exon 2 of 2)	exon (NM_024015, exon 2 of 2)	1525	NM_024015	3214		NM_024015	ENSG00000182742	HOXB4	HOX-2.6|HOX2|HOX2F	homeobox B4	protein-coding
133702	chr2	127293551	127294980	+	0	NA	promoter-TSS (NM_001303416)	promoter-TSS (NM_001303416)	-121	NM_001303416	2071		NM_000122	ENSG00000163161	ERCC3	BTF2|GTF2H|RAD25|Ssl2|TFIIH|TTD2|XPB	ERCC excision repair 3, TFIIH core complex helicase subunit	protein-coding
168878	chr3	152303721	152304680	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	5186	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
21702	chr1	206734421	206735300	+	0	NA	TTS (NM_004759)	TTS (NM_004759)	35743	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
40874	chr11	65108421	65109250	+	0	NA	exon (NM_013265, exon 5 of 10)	exon (NM_013265, exon 5 of 10)	-3019	NM_001277233	7108		NM_003273	ENSG00000149809	TM7SF2	ANG1|C14SR|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
135038	chr2	156325101	156325780	+	0	NA	3' UTR (NM_006186, exon 8 of 8)	3' UTR (NM_006186, exon 8 of 8)	7281	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
16897	chr1	155865901	155866350	+	0	NA	intron (NM_152280, intron 1 of 3)	AluSx|SINE|Alu	6558	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
146285	chr20	49124301	49124700	+	0	NA	exon (NM_001319134, exon 6 of 13)	exon (NM_001319134, exon 6 of 13)	63834	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
76644	chr15	75624811	75626600	+	0	NA	promoter-TSS (NM_005701)	promoter-TSS (NM_005701)	20	NM_005701	10073		NM_005701	ENSG00000169371	SNUPN	KPNBL|RNUT1|Snurportin1	snurportin 1	protein-coding
201381	chr6	144977351	144977450	+	0	NA	Intergenic	L1PA6|LINE|L1	394252	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
81528	chr16	9094321	9095150	+	0	NA	intron (NM_014117, intron 2 of 3)	L1ME1|LINE|L1	3091	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
225749	chr9	37118571	37119150	+	0	NA	Intergenic	AluJr|SINE|Alu	-1612	NR_110317	84186		NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
29953	chr10	73491151	73491250	+	0	NA	intron (NM_001289969, intron 1 of 12)	AluSg|SINE|Alu	-4552	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
212185	chr7	117010251	117011080	+	0	NA	intron (NR_161422, intron 1 of 14)	intron (NR_161422, intron 1 of 14)	-4247	NM_001369602	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
34278	chr10	131905851	131906230	+	0	NA	intron (NR_033191, intron 2 of 9)	intron (NR_033191, intron 2 of 9)	5032	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
56402	chr12	113220621	113222160	+	0	NA	promoter-TSS (NM_001351346)	promoter-TSS (NM_001351346)	-74	NM_001143819	53373		NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
192255	chr6	20236401	20236600	+	0	NA	Intergenic	Intergenic	-24031	NM_001080480	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
60584	chr13	41928271	41928580	+	0	NA	intron (NM_015058, intron 2 of 44)	L1MA9|LINE|L1	32660	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
155956	chr22	39719471	39719830	+	0	NA	Intergenic	Intergenic	148897	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
39714	chr11	61757651	61757750	+	0	NA	promoter-TSS (NR_026882)	promoter-TSS (NR_026882)	-36	NR_026882	26070		NR_026882	ENSG00000124915	MYRF-AS1	DKFZP434K028	MYRF antisense RNA 1	ncRNA
182591	chr5	66002471	66002730	+	0	NA	intron (NM_001253697, intron 4 of 25)	intron (NM_001253697, intron 4 of 25)	-57027	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
173585	chr4	10181101	10181530	+	0	NA	Intergenic	Intergenic	-64516	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
126571	chr2	28747571	28747730	+	0	NA	Intergenic	AluJo|SINE|Alu	-4098	NM_206876	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
39675	chr11	61697621	61697880	+	0	NA	intron (NM_006133, intron 1 of 19)	AluJr|SINE|Alu	17359	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
211537	chr7	105387701	105388300	+	0	NA	intron (NM_001350742, intron 2 of 16)	CpG	921	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
150518	chr21	42923701	42924500	+	0	NA	intron (NM_001308491, intron 1 of 1)	HERVH48-int|LTR|ERV1	1498	NM_001308491	90625		NM_001308491	ENSG00000233056	ERVH48-1	C21orf105|NDUFV3-AS1|SUPYN	endogenous retrovirus group 48 member 1, envelope	protein-coding
222312	chr8	133494671	133495030	+	0	NA	intron (NM_173344, intron 3 of 9)	L2a|LINE|L2	77037	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
110598	chr19	2175971	2176500	+	0	NA	intron (NM_032482, intron 1 of 27)	intron (NM_032482, intron 1 of 27)	12302	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
208311	chr7	66116921	66118030	+	0	NA	intron (NM_001040648, intron 1 of 2)	L2c|LINE|L2	2628	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
6243	chr1	27547571	27547730	+	0	NA	exon (NM_001371928, exon 8 of 9)	exon (NM_001371928, exon 8 of 9)	55844	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
91706	chr17	6454951	6456180	+	0	NA	exon (NM_031220, exon 20 of 20)	exon (NM_031220, exon 20 of 20)	11110	NM_001195228	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
42958	chr11	73650001	73650200	+	0	NA	intron (NM_001130036, intron 1 of 5)	AluJb|SINE|Alu	1187	NM_001130036	58473		NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding
182417	chr5	61357801	61358000	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	25642	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
219018	chr8	63391221	63391950	+	0	NA	Intergenic	Intergenic	-74264	NR_125825	102724612		NR_125825	ENSG00000253894	LOC102724612	-	uncharacterized LOC102724612	ncRNA
203253	chr6	169371871	169372700	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-118439	NR_167745	7058		NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
90008	chr16	89884451	89886450	+	0	NA	intron (NM_014972, intron 3 of 17)	intron (NM_014972, intron 3 of 17)	11858	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
119970	chr19	41897321	41897630	+	0	NA	intron (NM_004706, intron 13 of 28)	intron (NM_004706, intron 13 of 28)	13032	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
132363	chr2	105758571	105758730	+	0	NA	intron (NM_001004722, intron 1 of 3)	AluSx4|SINE|Alu	13587	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
178440	chr4	147845971	147846730	+	0	NA	intron (NM_024605, intron 3 of 22)	intron (NM_024605, intron 3 of 22)	63755	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
130065	chr2	74464621	74466100	+	0	NA	promoter-TSS (NM_001146158)	promoter-TSS (NM_001146158)	22	NM_006302	7841		NM_006302	ENSG00000115275	MOGS	CDG2B|CWH41|DER7|GCS1	mannosyl-oligosaccharide glucosidase	protein-coding
57655	chr12	122592271	122592430	+	0	NA	intron (NM_014708, intron 42 of 63)	LTR12C|LTR|ERV1	65101	NM_014708	9735		NM_014708	ENSG00000184445	KNTC1	ROD	kinetochore associated 1	protein-coding
213728	chr7	140361671	140361830	+	0	NA	intron (NM_032295, intron 5 of 11)	SVA_E|Retroposon|SVA	36780	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
21348	chr1	204706571	204706730	+	0	NA	Intergenic	Intergenic	-20912	NM_201630	10446		NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
204733	chr7	5561601	5563070	+	0	NA	Intergenic	CpG	-30481	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
38080	chr11	35198471	35199100	+	0	NA	intron (NM_001001389, intron 6 of 16)	AluY|SINE|Alu	35835	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
123499	chr19	54204251	54204930	+	0	NA	intron (NM_001321706, intron 3 of 3).8	AluJb|SINE|Alu	3732	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
185819	chr5	132448921	132449380	+	0	NA	intron (NR_161242, intron 2 of 3)	L2a|LINE|L2	38221	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
95920	chr17	38914471	38916130	+	0	NA	TTS (NR_106837)	TTS (NR_106837)	321	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
54473	chr12	92025671	92025900	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	115928	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
156005	chr22	39934901	39935300	+	0	NA	intron (NM_001291828, intron 1 of 4)	Plat_L3|LINE|CR1	8496	NM_001291828	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
54325	chr12	89598771	89598930	+	0	NA	intron (NM_001366523, intron 20 of 21)	intron (NM_001366523, intron 20 of 21)	-72588	NM_001199782	100528030		NM_001199781	ENSG00000259075	POC1B-GALNT4	GALNT4|GalNAc-T4	POC1B-GALNT4 readthrough	protein-coding
71040	chr14	104784901	104785430	+	0	NA	intron (NM_001382433, intron 4 of 15)	CpG	8436	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
47613	chr12	6039921	6040250	+	0	NA	promoter-TSS (NR_145989)	promoter-TSS (NR_145989)	98	NR_145989	109729112		NR_145989		SNORA120	-	small nucleolar RNA, H/ACA box 120	snoRNA
101211	chr17	65558651	65559200	+	0	NA	intron (NM_004655, intron 1 of 10)	intron (NM_004655, intron 1 of 10)	2723	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
53841	chr12	69584051	69584150	+	0	NA	promoter-TSS (NR_037476)	promoter-TSS (NR_037476)	-623	NR_037476	100500868		NR_037476	ENSG00000283677	MIR3913-2	mir-3913-2	microRNA 3913-2	ncRNA
1359	chr1	2502171	2502700	+	0	NA	exon (NM_001303012, exon 21 of 22)	exon (NM_001303012, exon 21 of 22)	24161	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
202067	chr6	154233751	154234350	+	0	NA	intron (NM_001130700, intron 5 of 11)	AluJo|SINE|Alu	96031	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
132069	chr2	101267871	101268780	+	0	NA	intron (NM_017546, intron 5 of 6)	intron (NM_017546, intron 5 of 6)	4724	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
14604	chr1	145279651	145279750	+	0	NA	Intergenic	MER4D1|LTR|ERV1	-1416	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
88643	chr16	85639771	85639930	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	26528	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
19661	chr1	180501971	180503250	+	0	NA	promoter-TSS (NM_032360)	promoter-TSS (NM_032360)	-33	NM_032360	84320		NM_032360	ENSG00000230124	ACBD6	NEDPM	acyl-CoA binding domain containing 6	protein-coding
154822	chr22	37053151	37053780	+	0	NA	intron (NM_001282685, intron 2 of 6)	intron (NM_001282685, intron 2 of 6)	1729	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
148484	chr20	64053621	64054630	+	0	NA	Intergenic	Intergenic	-2847	NM_198723	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
53148	chr12	57894871	57895600	+	0	NA	non-coding (NR_148947, exon 1 of 4)	non-coding (NR_148947, exon 1 of 4)	1247	NR_148947	283387		NR_148947	ENSG00000245651	LOC283387	-	uncharacterized LOC283387	ncRNA
99321	chr17	49834971	49835130	+	0	NA	TTS (NM_007067)	TTS (NM_007067)	-10836	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
234780	chrX	23950551	23950650	+	0	NA	Intergenic	AluJb|SINE|Alu	42594	NM_001169574	254158		NM_152761	ENSG00000165182	CXorf58	-	chromosome X open reading frame 58	protein-coding
108281	chr18	63306971	63307330	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	12619	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
61485	chr13	52456871	52457030	+	0	NA	intron (NM_001286687, intron 2 of 5)	AluSg|SINE|Alu	978	NM_001286686	26586		NM_018204	ENSG00000136108	CKAP2	LB1|TMAP|se20-10	cytoskeleton associated protein 2	protein-coding
122282	chr19	49074821	49075530	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2234	NM_031886	3743		NM_031886	ENSG00000104848	KCNA7	HAK6|KV1.7	potassium voltage-gated channel subfamily A member 7	protein-coding
217206	chr8	26353601	26353800	+	0	NA	intron (NM_002717, intron 3 of 9)	intron (NM_002717, intron 3 of 9)	29253	NR_144550	157489		NR_144550	ENSG00000293314	SDAD1P1	-	SDA1 domain containing 1 pseudogene 1	pseudo
39222	chr11	57641151	57642100	+	0	NA	TTS (NR_029673)	TTS (NR_029673)	427	NR_029673	406919		NR_029673	ENSG00000208009	MIR130A	MIRN130A|miRNA130A|mir-130a	microRNA 130a	ncRNA
22094	chr1	211577401	211578300	+	0	NA	intron (NM_021194, intron 1 of 1)	CpG	1311	NM_021194	7779		NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
171851	chr4	710971	711300	+	0	NA	intron (NM_001317836, intron 1 of 11)	intron (NM_001317836, intron 1 of 11)	5303	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
220848	chr8	103138801	103139030	+	0	NA	intron (NR_145429, intron 4 of 5)	intron (NR_145429, intron 4 of 5)	-1810	NM_001024372	79870		NM_024812	ENSG00000164929	BAALC	-	BAALC binder of MAP3K1 and KLF4	protein-coding
141414	chr2	240974721	240975380	+	0	NA	intron (NM_001351305, intron 27 of 31)	intron (NM_001351305, intron 27 of 31)	-7599	NR_033841	200772		NR_033841	ENSG00000233392	UICLM	CROCC2-AS1	up-regulated in colorectal cancer liver metastasis	ncRNA
79412	chr16	681901	682100	+	0	NA	non-coding (NR_136652, exon 7 of 7)	non-coding (NR_136652, exon 7 of 7)	1590	NM_001293197	10273		NM_005861	ENSG00000103266	STUB1	CHIP|HSPABP2|NY-CO-7|SCA48|SCAR16|SDCCAG7|UBOX1	STIP1 homology and U-box containing protein 1	protein-coding
122913	chr19	50630201	50630400	+	0	NA	intron (NM_032298, intron 2 of 8)	MIRc|SINE|MIR	7745	NM_032298	84258		NM_032298	ENSG00000213023	SYT3	SytIII	synaptotagmin 3	protein-coding
111764	chr19	4389251	4390130	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	10857	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
196725	chr6	45173751	45174350	+	0	NA	intron (NM_001350329, intron 2 of 10)	intron (NM_001350329, intron 2 of 10)	23720	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
125724	chr2	20642021	20643030	+	0	NA	intron (NM_022460, intron 2 of 6)	intron (NM_022460, intron 2 of 6)	8573	NM_022460	64342		NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
232962	chr9	136958401	136958900	+	0	NA	Intergenic	Intergenic	6377	NM_178536	286256		NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
112711	chr19	7185951	7187180	+	0	NA	intron (NM_001079817, intron 2 of 20)	L1MB3|LINE|L1	107849	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
83933	chr16	29081721	29082780	+	0	NA	intron (NR_003369, intron 3 of 16)	CpG	7408	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
152791	chr22	21822971	21823300	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSx|SINE|Alu	44510	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
72717	chr15	38669401	38669600	+	0	NA	Intergenic	Intergenic	-27098	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
52187	chr12	54329751	54330050	+	0	NA	intron (NM_001271734, intron 1 of 7)	intron (NM_001271734, intron 1 of 7)	4769	NM_016057	22818		NM_016057	ENSG00000111481	COPZ1	CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP	COPI coat complex subunit zeta 1	protein-coding
142461	chr20	4037521	4038600	+	0	NA	Intergenic	Intergenic	-22502	NM_001134337	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
73508	chr15	43770851	43771150	+	0	NA	intron (NM_005313, intron 12 of 12)	intron (NM_005313, intron 12 of 12)	5966	NM_025165	80237		NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
121446	chr19	47037721	47038430	+	0	NA	intron (NM_002517, intron 6 of 11)	L2b|LINE|L2	2758	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
204116	chr7	2252151	2253250	+	0	NA	3' UTR (NM_013321, exon 11 of 11)	3' UTR (NM_013321, exon 11 of 11)	3389	NR_160264	4521		NM_002452	ENSG00000106268	NUDT1	MTH1	nudix hydrolase 1	protein-coding
180718	chr5	27172001	27172200	+	0	NA	Intergenic	Charlie3|DNA|hAT-Charlie	-133514	NM_016279	1007		NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding
143158	chr20	24032901	24034000	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-44671	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
135974	chr2	172101901	172103400	+	0	NA	promoter-TSS (NR_126376)	promoter-TSS (NR_126376)	250	NM_004405	1746		NM_004405	ENSG00000115844	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
210189	chr7	98871201	98871730	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-1451	NM_001134451	222865		NM_152913	ENSG00000166448	TMEM130	-	transmembrane protein 130	protein-coding
104610	chr17	81417451	81417950	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-16922	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
175147	chr4	55444921	55446030	+	0	NA	intron (NM_001267843, intron 19 of 23)	LTR41C|LTR|ERVL	49518	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
12019	chr1	96725171	96725530	+	0	NA	intron (NM_001300990, intron 2 of 12)	AluY|SINE|Alu	2712	NR_125356	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
137167	chr2	191111601	191111800	+	0	NA	intron (NM_003151, intron 3 of 23)	AluJr|SINE|Alu	39294	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
207169	chr7	43602821	43603080	+	0	NA	intron (NM_004760, intron 2 of 6)	intron (NM_004760, intron 2 of 6)	19842	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
162112	chr3	46923371	46924100	+	0	NA	intron (NM_144716, intron 4 of 7)	intron (NM_144716, intron 4 of 7)	41486	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
190259	chr5	179024771	179025230	+	0	NA	5' UTR (NM_001136116, exon 2 of 5)	5' UTR (NM_001136116, exon 2 of 5)	1196	NM_001353374	345462		NM_001136116	ENSG00000234284	ZNF879	DKFZp686E2433	zinc finger protein 879	protein-coding
125623	chr2	19351801	19352730	+	0	NA	3' UTR (NM_145260, exon 3 of 3)	3' UTR (NM_145260, exon 3 of 3)	3836	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
3362	chr1	15602871	15604480	+	0	NA	Intergenic	CpG	-13783	NM_032341	84301		NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
111663	chr19	4248801	4249850	+	0	NA	exon (NM_018074, exon 2 of 8)	exon (NM_018074, exon 2 of 8)	2245	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
205272	chr7	8197871	8198850	+	0	NA	intron (NR_146926, intron 6 of 13)	L2|LINE|L2	63807	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
110566	chr19	2135921	2136380	+	0	NA	intron (NM_001374799, intron 4 of 31)	CpG	15416	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
152460	chr22	20701821	20704900	+	0	NA	intron (NR_026815, intron 3 of 7)	CpG-18798	2246	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
142790	chr20	13261901	13262300	+	0	NA	intron (NM_080826, intron 1 of 5)	intron (NM_080826, intron 1 of 5)	-22413	NR_040043	100505536		NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	ncRNA
102264	chr17	75282471	75282630	+	0	NA	intron (NM_001126121, intron 5 of 7)	AluSq2|SINE|Alu	6883	NM_001126121	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
107586	chr18	48851501	48851900	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	91107	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
218501	chr8	52715871	52716030	+	0	NA	Intergenic	AluJb|SINE|Alu	-1484	NM_001083617	9821		NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
233354	chr9	137456951	137457050	+	0	NA	intron (NM_001130969, intron 3 of 15)	intron (NM_001130969, intron 3 of 15)	2334	NM_001130971	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228554	chr9	101549501	101549750	+	0	NA	intron (NM_019592, intron 9 of 19)	LTR13|LTR|ERVK	15772	NM_019592	56254		NM_019592	ENSG00000155827	RNF20	BRE1|BRE1A|hBRE1	ring finger protein 20	protein-coding
171965	chr4	904171	904850	+	0	NA	intron (NM_001318134, intron 2 of 24)	CpG	27806	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
67710	chr14	73452151	73452600	+	0	NA	intron (NM_003744, intron 1 of 11)	(AAAAC)n|Simple_repeat|Simple_repeat	6205	NM_003744	8650		NM_003744	ENSG00000133961	NUMB	C14orf41|S171|c14_5527	NUMB endocytic adaptor protein	protein-coding
108000	chr18	58691951	58692050	+	0	NA	intron (NM_173844, intron 2 of 15)	AluSx|SINE|Alu	-20127	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
69853	chr14	99259211	99259900	+	0	NA	intron (NM_022898, intron 1 of 2)	intron (NM_022898, intron 1 of 2)	12642	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
235926	chrX	53190501	53191480	+	0	NA	TTS (NM_001353984)	TTS (NM_001353984)	4498	NR_106955	102465539		NR_106955	ENSG00000276575	MIR6895	hsa-mir-6895	microRNA 6895	ncRNA
58541	chr12	132240771	132241300	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-34356	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
1889	chr1	6439851	6441350	+	0	NA	intron (NM_031475, intron 3 of 12)	CpG-341	-10704	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
117836	chr19	31339251	31339550	+	0	NA	intron (NR_138034, intron 1 of 1)	intron (NR_138034, intron 1 of 1)	10036	NR_138034	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
70089	chr14	100175801	100176000	+	0	NA	Intergenic	Intergenic	-16255	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
200953	chr6	139181121	139181580	+	0	NA	TTS (NM_016217)	TTS (NM_016217)	46270	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
184595	chr5	103112451	103112550	+	0	NA	intron (NM_017676, intron 1 of 7)	intron (NM_017676, intron 1 of 7)	7638	NM_001317954	54826		NM_017676	ENSG00000145723	GIN1	GIN-1|TGIN1|ZH2C2	gypsy retrotransposon integrase 1	protein-coding
194251	chr6	32528821	32529200	+	0	NA	intron (NM_002125, intron 1 of 5)	intron (NM_002125, intron 1 of 5)	1277	NM_002125	3127		NM_002125	ENSG00000198502	HLA-DRB5	DRB5|HLA-DRB5*	major histocompatibility complex, class II, DR beta 5	protein-coding
157591	chr22	46003221	46003480	+	0	NA	Intergenic	Intergenic	-3266	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
117511	chr19	20040651	20040950	+	0	NA	Intergenic	Intergenic	-1295	NM_033196	91120		NM_033196	ENSG00000197124	ZNF682	BC39498_3	zinc finger protein 682	protein-coding
207010	chr7	38360101	38360600	+	0	NA	intron (NR_040085, intron 3 of 3)	L1ME3G|LINE|L1	18773	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
168907	chr3	152331921	152332230	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	8915	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
193731	chr6	31244321	31244800	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	27532	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
49963	chr12	40946671	40946850	+	0	NA	intron (NM_175038, intron 12 of 21)	intron (NM_175038, intron 12 of 21)	38403	NM_175038	1272		NM_001843	ENSG00000018236	CNTN1	CMYP12|F3|GP135|MYPCN	contactin 1	protein-coding
57722	chr12	122876571	122877100	+	0	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	19289	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
107978	chr18	58609521	58609780	+	0	NA	intron (NM_052947, intron 2 of 12)	intron (NM_052947, intron 2 of 12)	9030	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
54060	chr12	76022751	76023280	+	0	NA	Intergenic	Intergenic	8761	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
112442	chr19	6370871	6371450	+	0	NA	TTS (NM_006012)	TTS (NM_006012)	-1634	NM_032306	84266		NM_032306	ENSG00000125652	ALKBH7	ABH7|SPATA11|UNQ6002	alkB homolog 7	protein-coding
84420	chr16	30369941	30371550	+	0	NA	promoter-TSS (NM_001324459)	promoter-TSS (NM_001324459)	-189	NM_001324459	29895		NM_013292	ENSG00000180209	MYL11	DA1C|HUMMLC2B|MLC2B|MRLC2|MYLPF	myosin light chain 11	protein-coding
10787	chr1	77533521	77534030	+	0	NA	intron (NM_174858, intron 12 of 13)	intron (NM_174858, intron 12 of 13)	148883	NM_001376155	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
55816	chr12	108838121	108839250	+	0	NA	intron (NM_001161330, intron 2 of 13)	intron (NM_001161330, intron 2 of 13)	-1679	NR_030350	693204		NR_030350	ENSG00000207622	MIR619	MIRN619|hsa-mir-619	microRNA 619	ncRNA
126820	chr2	30504851	30504950	+	0	NA	intron (NM_001304445, intron 3 of 7)	L1ME3G|LINE|L1	57654	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
803	chr1	1550951	1551750	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	-10726	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
189806	chr5	176877221	176877480	+	0	NA	intron (NM_133369, intron 9 of 14)	intron (NM_133369, intron 9 of 14)	21996	NM_002115	3101		NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3	protein-coding
200603	chr6	136739371	136739750	+	0	NA	intron (NM_005923, intron 1 of 29)	intron (NM_005923, intron 1 of 29)	-44487	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
102786	chr17	76356771	76356930	+	0	NA	Intergenic	AluJb|SINE|Alu	-2652	NM_001366236	5635		NM_002766	ENSG00000161542	PRPSAP1	PAP39	phosphoribosyl pyrophosphate synthetase associated protein 1	protein-coding
227425	chr9	89743301	89744730	+	0	NA	Intergenic	Intergenic	104232	NR_024280	100129066		NR_024280	ENSG00000237372	LINC03062	-	long intergenic non-protein coding RNA 3062	ncRNA
147590	chr20	61980871	61981030	+	0	NA	intron (NM_003185, intron 14 of 14)	L1MC4|LINE|L1	-27288	NR_031658	100302168		NR_031658	ENSG00000284193	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
9105	chr1	45301551	45302280	+	0	NA	Intergenic	L2c|LINE|L2	-1995	NR_024270	400752		NR_024270	ENSG00000281912	LINC01144	-	long intergenic non-protein coding RNA 1144	ncRNA
89824	chr16	89573121	89573600	+	0	NA	Intergenic	Intergenic	-2398	NM_014427	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
97945	chr17	45220101	45220530	+	0	NA	non-coding (NR_147507, exon 2 of 3)	non-coding (NR_147507, exon 2 of 3)	1450	NR_147507	339192		NR_147507	ENSG00000267121	FMNL1-DT	-	FMNL1 divergent transcript	ncRNA
168657	chr3	150414951	150415050	+	0	NA	intron (NM_001303264, intron 1 of 2)	intron (NM_001303264, intron 1 of 2)	6702	NR_130136	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
201506	chr6	149052401	149052600	+	0	NA	intron (NM_005715, intron 7 of 7)	MIRb|SINE|MIR	-19839	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
159787	chr3	16318971	16319950	+	0	NA	intron (NM_015150, intron 9 of 9)	MIRb|SINE|MIR	54248	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
214181	chr7	146019051	146019150	+	0	NA	Intergenic	L1PA2|LINE|L1	-755171	NM_014141	26047		NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein 2	protein-coding
172248	chr4	1355071	1355530	+	0	NA	intron (NM_001317935, intron 7 of 13)	intron (NM_001317935, intron 7 of 13)	7744	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
19879	chr1	183623021	183623750	+	0	NA	3' UTR (NM_001270439, exon 4 of 4)	3' UTR (NM_001270439, exon 4 of 4)	12398	NM_005717	10092		NM_005717	ENSG00000162704	ARPC5	ARC16|IMD113|dJ127C7.3|p16-Arc	actin related protein 2/3 complex subunit 5	protein-coding
54095	chr12	76078971	76079930	+	0	NA	intron (NM_139207, intron 1 of 15)	AluJr4|SINE|Alu	5235	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
52389	chr12	55725921	55726180	+	0	NA	intron (NM_001257390, intron 6 of 7)	intron (NM_001257390, intron 6 of 7)	1738	NM_001257401	967		NM_001780	ENSG00000135404	CD63	AD1|HOP-26|ME491|MLA1|OMA81H|Pltgp40|TSPAN30	CD63 molecule	protein-coding
90173	chr17	315501	316150	+	0	NA	intron (NM_006987, intron 5 of 9).2	intron (NM_006987, intron 5 of 9).2	-15694	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
145369	chr20	41161401	41162600	+	0	NA	intron (NM_182811, intron 4 of 31)	intron (NM_182811, intron 4 of 31)	-7023	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
118216	chr19	35161401	35162080	+	0	NA	intron (NM_014164, intron 5 of 8)	MLT1K|LTR|ERVL-MaLR	7005	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
158296	chr22	50381101	50382000	+	0	NA	intron (NM_001351641, intron 2 of 23)	MSTB1|LTR|ERVL-MaLR	-25892	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
46304	chr11	124920751	124921530	+	0	NA	TTS (NM_001037558)	TTS (NM_001037558)	1890	NM_001037558	641654		NM_001037558	ENSG00000221932	HEPN1	-	hepatocellular carcinoma, down-regulated 1	protein-coding
78808	chr15	99507801	99508000	+	0	NA	Intergenic	Intergenic	-57517	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
22968	chr1	226069721	226070550	+	0	NA	intron (NR_002315, intron 3 of 3)	intron (NR_002315, intron 3 of 3)	7408	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
79635	chr16	1154751	1155050	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	1659	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
74989	chr15	63916121	63916380	+	0	NA	3' UTR (NM_001363730, exon 10 of 10)	3' UTR (NM_001363730, exon 10 of 10)	-12024	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
159619	chr3	15270401	15270780	+	0	NA	intron (NM_004844, intron 3 of 8)	intron (NM_004844, intron 3 of 8)	16406	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
119699	chr19	41120771	41121950	+	0	NA	intron (NR_135528, intron 4 of 9)	intron (NR_135528, intron 4 of 9)	6928	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
188974	chr5	163502871	163503550	+	0	NA	5' UTR (NM_182796, exon 1 of 7)	5' UTR (NM_182796, exon 1 of 7)	146	NM_182796	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
85195	chr16	46961171	46962030	+	0	NA	intron (NM_005880, intron 6 of 8)	Alu|SINE|Alu	12074	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
232616	chr9	136441451	136441550	+	0	NA	3' UTR (NM_001276418, exon 29 of 29)	3' UTR (NM_001276418, exon 29 of 29)	-1655	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
13154	chr1	111722501	111722700	+	0	NA	3' UTR (NM_198926, exon 2 of 2)	3' UTR (NM_198926, exon 2 of 2)	16795	NM_019099	55924		NM_019099	ENSG00000197852	INKA2	C1orf183|FAM212B	inka box actin regulator 2	protein-coding
132110	chr2	101473921	101474570	+	0	NA	intron (NM_001367508, intron 1 of 12)	CpG	867	NM_001367508	731220		NM_207403	ENSG00000196460	RFX8	-	regulatory factor X8	protein-coding
191650	chr6	13381701	13382100	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	26237	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
50960	chr12	49544171	49544630	+	0	NA	intron (NM_001314030, intron 7 of 14)	intron (NM_001314030, intron 7 of 14)	5370	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
65947	chr14	55585901	55586100	+	0	NA	intron (NM_001079521, intron 1 of 43)	intron (NM_001079521, intron 1 of 43)	5793	NM_004986	3895		NM_004986	ENSG00000126777	KTN1	CG1|KNT|MU-RMS-40.19	kinectin 1	protein-coding
161759	chr3	44759771	44760530	+	0	NA	intron (NM_001320334, intron 1 of 2)	Tigger1|DNA|TcMar-Tigger	1469	NM_020696	57456		NM_020696	ENSG00000163807	KIAA1143	-	KIAA1143	protein-coding
225776	chr9	37429871	37430230	+	0	NA	intron (NM_012203, intron 6 of 8)	intron (NM_012203, intron 6 of 8)	7354	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
74238	chr15	56805901	56806130	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-71929	NM_001002843	54816		NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
78101	chr15	90270101	90270800	+	0	NA	intron (NR_028052, intron 1 of 1)	intron (NR_028052, intron 1 of 1)	-4691	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
111286	chr19	3568271	3569050	+	0	NA	Intergenic	AluSx|SINE|Alu	-4284	NM_006339	10362		NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
7066	chr1	32011351	32012080	+	0	NA	Intergenic	AluSc|SINE|Alu	-2153	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
85160	chr16	46620801	46622130	+	0	NA	promoter-TSS (NR_136738)	promoter-TSS (NR_136738)	-86	NM_001324318	79801		NM_024745	ENSG00000171241	SHCBP1	PAL	SHC binding and spindle associated 1	protein-coding
117497	chr19	19860771	19861350	+	0	NA	Intergenic	Intergenic	-4770	NM_001331134	56242		NM_021047	ENSG00000256771	ZNF253	BMZF-1|BMZF1|ZNF411	zinc finger protein 253	protein-coding
157417	chr22	45096271	45096530	+	0	NA	Intergenic	Intergenic	56184	NR_038957	100506714		NR_038956	ENSG00000226328	NUP50-DT	NUP50-AS1	NUP50 divergent transcript	ncRNA
236291	chrX	66718951	66719050	+	0	NA	Intergenic	L1PA8|LINE|L1	-79702	NM_001199687	60401		NM_021783	ENSG00000131080	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
200704	chr6	137405951	137406050	+	0	NA	Intergenic	Intergenic	88394	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
91223	chr17	3929101	3929300	+	0	NA	intron (NM_174953, intron 19 of 22)	intron (NM_174953, intron 19 of 22)	-12735	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
50995	chr12	49639371	49639530	+	0	NA	3' UTR (NM_001367835, exon 27 of 27)	3' UTR (NM_001367835, exon 27 of 27)	15889	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
223085	chr8	143417051	143417350	+	0	NA	promoter-TSS (NR_126358)	promoter-TSS (NR_126358)	-479	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
171357	chr3	196065371	196065730	+	0	NA	exon (NM_001128148, exon 10 of 19)	exon (NM_001128148, exon 10 of 19)	16540	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
191900	chr6	15389001	15389400	+	0	NA	intron (NM_001267040, intron 2 of 17)	AluJr|SINE|Alu	140345	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
85408	chr16	50310471	50311030	+	0	NA	TTS (NM_001286057)	TTS (NM_001286057)	18134	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
93589	chr17	19125121	19126150	+	0	NA	Intergenic	Intergenic	-1954	NM_001353418	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
25847	chr10	11229921	11230600	+	0	NA	intron (NM_001326330, intron 3 of 12)	L1MA9|LINE|L1	65230	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
188038	chr5	149724521	149724980	+	0	NA	Intergenic	Intergenic	-5560	NM_001172698	133522		NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
31956	chr10	100713351	100714050	+	0	NA	Intergenic	CpG	-21696	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
62161	chr13	97238321	97239050	+	0	NA	intron (NM_001382682, intron 1 of 7)	intron (NM_001382682, intron 1 of 7)	16352	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
100352	chr17	59915321	59915580	+	0	NA	intron (NR_161455, intron 4 of 13)	intron (NR_161455, intron 4 of 13)	22329	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
232134	chr9	134022901	134023380	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	-2336	NR_149319	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
158268	chr22	50326671	50327850	+	0	NA	promoter-TSS (NM_001001794)	promoter-TSS (NM_001001794)	-248	NM_001001794	414918		NM_001001794	ENSG00000205593	DENND6B	AFI1B|FAM116B	DENN domain containing 6B	protein-coding
82052	chr16	12689171	12689850	+	0	NA	intron (NM_001099455, intron 2 of 2)	AluJr|SINE|Alu	-30811	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
193609	chr6	30734871	30735130	+	0	NA	intron (NM_001318875, intron 7 of 11).2	HAL1|LINE|L1	7687	NM_005803	10211		NM_005803	ENSG00000137312	FLOT1	-	flotillin 1	protein-coding
57214	chr12	121507771	121507930	+	0	NA	intron (NM_001005366, intron 11 of 22)	AluJb|SINE|Alu	-63498	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
142338	chr20	3716301	3716930	+	0	NA	Intergenic	MIRb|SINE|MIR	-4015	NM_023068	6614		NM_023068	ENSG00000088827	SIGLEC1	CD169|SIGLEC-1|SN	sialic acid binding Ig like lectin 1	protein-coding
82544	chr16	18404951	18405250	+	0	NA	TTS (NR_049832).4	TTS (NR_049832).4	662	NR_037442	100500910		NR_037442	ENSG00000263918	MIR3670-1	MIR3670|hsa-mir-3670-1	microRNA 3670-1	ncRNA
121479	chr19	47111901	47112600	+	0	NA	intron (NM_015168, intron 2 of 14)	(GAGC)n|Simple_repeat|Simple_repeat	1526	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
62868	chr13	110575771	110575930	+	0	NA	Intergenic	Intergenic	-14128	NM_017817	55647		NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
207237	chr7	43757221	43757600	+	0	NA	Intergenic	L2a|LINE|L2	-1263	NM_001253823	644		NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA|BVRalpha	biliverdin reductase A	protein-coding
174914	chr4	49106971	49107550	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	120618	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
193959	chr6	31688051	31688150	+	0	NA	exon (NM_021160, exon 16 of 20).3	exon (NM_021160, exon 16 of 20).3	-7727	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
178054	chr4	139841601	139841800	+	0	NA	intron (NM_018717, intron 2 of 4)	intron (NM_018717, intron 2 of 4)	175881	NM_001204368	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
137239	chr2	191683771	191683930	+	0	NA	intron (NR_045623, intron 5 of 6)	intron (NR_045623, intron 5 of 6)	5714	NM_001031716	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
144572	chr20	35770721	35770980	+	0	NA	Intergenic	AluJb|SINE|Alu	-1165	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
163700	chr3	52270071	52270430	+	0	NA	intron (NM_025222, intron 2 of 8)	AluSx|SINE|Alu	-1889	NR_029660	406890		NR_029660	ENSG00000199150	MIRLET7G	LET7G|MIRNLET7G|hsa-let-7g|let-7g	microRNA let-7g	ncRNA
234852	chrX	24693501	24694500	+	0	NA	promoter-TSS (NM_001378303)	promoter-TSS (NM_001378303)	82	NM_001330360	5422		NM_016937	ENSG00000101868	POLA1	NSX|PDR|POLA|VEODS|p180	DNA polymerase alpha 1, catalytic subunit	protein-coding
177128	chr4	108106721	108107390	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	59742	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
129121	chr2	65233751	65234050	+	0	NA	intron (NM_005722, intron 1 of 8)	AluSz|SINE|Alu	6069	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
149352	chr21	29148551	29148650	+	0	NA	intron (NM_001286624, intron 1 of 3)	intron (NM_001286624, intron 1 of 3)	3023	NM_001286624	56911		NM_020152	ENSG00000156265	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
196892	chr6	52295621	52295880	+	0	NA	Intergenic	AluSz|SINE|Alu	-11008	NM_001270472	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
11462	chr1	89953051	89953430	+	0	NA	Intergenic	LTR8B|LTR|ERV1	41726	NR_002830	492303		NR_002830		GEMIN8P4	-	gem nuclear organelle associated protein 8 pseudogene 4	pseudo
131889	chr2	98736221	98737150	+	0	NA	Intergenic	Intergenic	-5553	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
187460	chr5	142123951	142124250	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	15321	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
201887	chr6	150895051	150895850	+	0	NA	intron (NM_015440, intron 7 of 27)	intron (NM_015440, intron 7 of 27)	28964	NM_001350491	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
34758	chr11	190851	190950	+	0	NA	Intergenic	LTR60B|LTR|ERV1	-2178	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
107034	chr18	32105071	32105750	+	0	NA	intron (NM_198128, intron 1 of 4)	intron (NM_198128, intron 1 of 4)	12804	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
107301	chr18	44786721	44786980	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	85975	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
153324	chr22	24272751	24273080	+	0	NA	intron (NM_001254732, intron 1 of 14)	intron (NM_001254732, intron 1 of 14)	2084	NM_001254732	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
61296	chr13	50226371	50226780	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	54557	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
161931	chr3	46089371	46089530	+	0	NA	Intergenic	Intergenic	-3606	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
218386	chr8	44952471	44952650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1660118	NM_001005365	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
189587	chr5	175640071	175640430	+	0	NA	Intergenic	LTR33|LTR|ERVL	-17821	NR_160284	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
42241	chr11	68113671	68114030	+	0	NA	intron (NM_212469, intron 1 of 10)	AluSq2|SINE|Alu	7538	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
145063	chr20	38470601	38470800	+	0	NA	Intergenic	Intergenic	-2143	NM_020336	57148		NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta	Ral GTPase activating protein non-catalytic subunit beta	protein-coding
114715	chr19	13162201	13164100	+	0	NA	Intergenic	CpG	12739	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
154795	chr22	36830471	36831030	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-11251	NM_002854	5816		NM_002854	ENSG00000100362	PVALB	D22S749	parvalbumin	protein-coding
22324	chr1	214123251	214123430	+	0	NA	Intergenic	Intergenic	134807	NM_002763	5629		NM_002763	ENSG00000117707	PROX1	-	prospero homeobox 1	protein-coding
144465	chr20	35600271	35602230	+	0	NA	intron (NR_119376, intron 14 of 42)	CpG	6312	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
138819	chr2	216346771	216347000	+	0	NA	intron (NM_020814, intron 1 of 3)	MSTA|LTR|ERVL-MaLR	25598	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
71611	chr14	106662751	106663250	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	180561	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
75619	chr15	67134051	67135730	+	0	NA	intron (NM_001145102, intron 1 of 8)	MIR|SINE|MIR	-3131	NM_001145103	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
208817	chr7	73649571	73650500	+	0	NA	Intergenic	Intergenic	-17796	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
99091	chr17	49005001	49005200	+	0	NA	intron (NM_001160423, intron 2 of 12)	intron (NM_001160423, intron 2 of 12)	7715	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
211316	chr7	103447171	103447550	+	0	NA	intron (NR_110141, intron 2 of 3)	intron (NR_110141, intron 2 of 3)	-1153	NM_206883	375611		NM_198999	ENSG00000170615	SLC26A5	DFNB61|PRES	solute carrier family 26 member 5	protein-coding
17911	chr1	160206871	160207030	+	0	NA	intron (NR_123725, intron 2 of 4)	intron (NR_123725, intron 2 of 4)	1566	NM_003768	8682		NM_003768	ENSG00000162734	PEA15	HMAT1|HUMMAT1H|MAT1|MAT1H|PEA-15|PED|PED-PEA15|PED/PEA15	proliferation and apoptosis adaptor protein 15	protein-coding
8476	chr1	40801671	40803080	+	0	NA	intron (NM_172163, intron 1 of 12)	CpG	18588	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
187791	chr5	146208471	146208630	+	0	NA	intron (NM_018989, intron 1 of 20)	intron (NM_018989, intron 1 of 20)	4945	NM_018989	54439		NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18|ZC3H20	RNA binding motif protein 27	protein-coding
187873	chr5	148454751	148454870	+	0	NA	intron (NM_001040169, intron 5 of 5)	MIRc|SINE|MIR	70852	NM_030793	81545		NM_030793	ENSG00000145868	FBXO38	Fbx38|HMN2D|HMND6|MOKA|SP329	F-box protein 38	protein-coding
221615	chr8	125637221	125637880	+	0	NA	Intergenic	Intergenic	205341	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
228418	chr9	99266371	99267000	+	0	NA	Intergenic	Intergenic	44403	NM_006808	10952		NM_006808	ENSG00000106803	SEC61B	-	SEC61 translocon subunit beta	protein-coding
198303	chr6	100461971	100462130	+	0	NA	intron (NM_005068, intron 2 of 11)	intron (NM_005068, intron 2 of 11)	2406	NM_001374769	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
175772	chr4	77785621	77786680	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluSx1|SINE|Alu	32914	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
158729	chr3	8683051	8683150	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-31016	NM_015931	51066		NM_015931	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog	protein-coding
222804	chr8	142449151	142450080	+	0	NA	promoter-TSS (NM_001702)	promoter-TSS (NM_001702)	-34	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
207548	chr7	44843171	44843330	+	0	NA	intron (NM_201436, intron 1 of 3)	intron (NM_201436, intron 1 of 3)	4837	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
195388	chr6	36755321	36756580	+	0	NA	intron (NM_001376889, intron 14 of 21)	intron (NM_001376889, intron 14 of 21)	1450	NM_001376891	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
212851	chr7	130843571	130843930	+	0	NA	Intergenic	Intergenic	33060	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
46864	chr11	133936701	133937100	+	0	NA	intron (NM_001277285, intron 5 of 19)	intron (NM_001277285, intron 5 of 19)	20068	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
78368	chr15	91453471	91453930	+	0	NA	Intergenic	L1PB1|LINE|L1	-9639	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
3663	chr1	16411951	16412450	+	0	NA	intron (NM_001353349, intron 2 of 10)	L2|LINE|L2	25224	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
28095	chr10	43386371	43386530	+	0	NA	3' UTR (NM_004966, exon 4 of 4)	3' UTR (NM_004966, exon 4 of 4)	10381	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
142523	chr20	4961801	4962930	+	0	NA	intron (NM_203327, intron 2 of 16)	intron (NM_203327, intron 2 of 16)	39145	NM_005116	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
22172	chr1	212258901	212259350	+	0	NA	intron (NR_125984, intron 1 of 3)	L2c|LINE|L2	-24389	NR_125982	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
53084	chr12	57737251	57738000	+	0	NA	exon (NM_001122772, exon 1 of 19)	exon (NM_001122772, exon 1 of 19)	621	NM_001122772	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
228685	chr9	107489651	107490500	+	0	NA	promoter-TSS (NM_001314052)	promoter-TSS (NM_001314052)	-306	NM_001314052	9314		NM_004235	ENSG00000136826	KLF4	EZF|GKLF	KLF transcription factor 4	protein-coding
24541	chr1	244852751	244853200	+	0	NA	3' UTR (NM_004501, exon 14 of 14)	3' UTR (NM_004501, exon 14 of 14)	1242	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
221488	chr8	124493501	124494200	+	0	NA	exon (NM_001317890, exon 9 of 10)	exon (NM_001317890, exon 9 of 10)	14726	NR_106903	102466200		NR_106903	ENSG00000284087	MIR6844	hsa-mir-6844	microRNA 6844	ncRNA
144343	chr20	34995601	34996400	+	0	NA	intron (NM_020884, intron 28 of 44)	intron (NM_020884, intron 28 of 44)	-5528	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
21576	chr1	206473951	206474330	+	0	NA	promoter-TSS (NR_106919)	promoter-TSS (NR_106919)	-663	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
144227	chr20	34387501	34387900	+	0	NA	intron (NM_031483, intron 2 of 24)	intron (NM_031483, intron 2 of 24)	24427	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
86923	chr16	68086621	68087200	+	0	NA	intron (NM_173165, intron 1 of 9)	intron (NM_173165, intron 1 of 9)	1540	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
28060	chr10	43284251	43284800	+	0	NA	Intergenic	Intergenic	-17460	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
130476	chr2	85553151	85553980	+	0	NA	intron (NM_000821, intron 7 of 14)	intron (NM_000821, intron 7 of 14)	7928	NM_001311312	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
197698	chr6	85667971	85668700	+	0	NA	Intergenic	Intergenic	9033	NR_002743	26799		NR_002743		SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
86892	chr16	68000651	68001900	+	0	NA	promoter-TSS (NR_136706)	promoter-TSS (NR_136706)	-656	NR_136706	64174		NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
23197	chr1	226995871	226996230	+	0	NA	intron (NM_001366011, intron 34 of 35)	intron (NM_001366011, intron 34 of 35)	55756	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
231878	chr9	132991621	132991900	+	0	NA	TTS (NM_004188)	TTS (NM_004188)	12484	NM_001377305	8328		NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding
141558	chr2	241507251	241509800	+	0	NA	promoter-TSS (NM_001271980)	promoter-TSS (NM_001271980)	59	NM_001282308	10494		NM_006374	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
87651	chr16	74574651	74575450	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluSg7|SINE|Alu	32064	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
68686	chr14	90395001	90395450	+	0	NA	Intergenic	AluSc5|SINE|Alu	-1277	NM_001363669	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
147170	chr20	56454501	56455500	+	0	NA	intron (NM_001164114, intron 5 of 5)	MER113|DNA|hAT-Charlie	-13585	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
199795	chr6	127119401	127119600	+	0	NA	intron (NM_032784, intron 1 of 4)	CpG	829	NM_032784	84870		NM_032784	ENSG00000146374	RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
120886	chr19	45582421	45582880	+	0	NA	intron (NM_025136, intron 1 of 1)	LTR8|LTR|ERV1	2152	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
212965	chr7	130964401	130964800	+	0	NA	intron (NR_109852, intron 4 of 5)	AluSx1|SINE|Alu	51136	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
47134	chr12	728671	729500	+	0	NA	Intergenic	Intergenic	-23494	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
151627	chr22	15784871	15785230	+	0	NA	promoter-TSS (NR_122113)	promoter-TSS (NR_122113)	96	NR_122113	503637		NR_122113	ENSG00000206195	DUXAP8	-	double homeobox A pseudogene 8	pseudo
91572	chr17	5190551	5190930	+	0	NA	intron (NM_032530, intron 1 of 1)	LTR6A|LTR|ERV1	1128	NM_032530	84622		NM_032530	ENSG00000180626	ZNF594	-	zinc finger protein 594	protein-coding
78677	chr15	95733921	95734450	+	0	NA	Intergenic	Intergenic	301092	NR_027133	145820		NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
163057	chr3	49936401	49936600	+	0	NA	Intergenic	AluSc|SINE|Alu	-3650	NM_001349192	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
84321	chr16	30143071	30143650	+	0	NA	Intergenic	HAL1|LINE|L1	-20051	NM_001109891	5595		NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
184175	chr5	95811921	95812380	+	0	NA	Intergenic	HAL1|LINE|L1	10576	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
181456	chr5	41869531	41870880	+	0	NA	5' UTR (NM_001364300, exon 1 of 17)	5' UTR (NM_001364300, exon 1 of 17)	175	NR_046635	100874002		NR_046635	ENSG00000248668	OXCT1-AS1	SARRAH	OXCT1 antisense RNA 1	ncRNA
92176	chr17	7714951	7715250	+	0	NA	Intergenic	Intergenic	-2644	NM_020877	146754		NM_020877	ENSG00000183914	DNAH2	DNAHC2|DNHD3|SPGF45	dynein axonemal heavy chain 2	protein-coding
157171	chr22	42965251	42965550	+	0	NA	intron (NM_001184970, intron 1 of 10)	L1ME1|LINE|L1	-5064	NM_001349970	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
72279	chr15	30833321	30833780	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	15514	NR_072991	390561		NR_072991		HERC2P10	-	HERC2 pseudogene 10	pseudo
97180	chr17	42673851	42674580	+	0	NA	intron (NM_024927, intron 2 of 12)	intron (NM_024927, intron 2 of 12)	1796	NR_073574	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
232182	chr9	134182621	134183000	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-18246	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
194787	chr6	34195771	34196980	+	0	NA	Intergenic	CpG	-40498	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
149250	chr21	25737321	25737580	+	0	NA	intron (NM_002040, intron 1 of 9)	intron (NM_002040, intron 1 of 9)	-1796	NM_001320267	522		NM_001685	ENSG00000154723	ATP5PF	ATP5|ATP5A|ATP5J|ATPM|CF6|F6	ATP synthase peripheral stalk subunit F6	protein-coding
75657	chr15	67557051	67557350	+	0	NA	intron (NM_145160, intron 2 of 21)	intron (NM_145160, intron 2 of 21)	8106	NM_001206804	5607		NM_002757	ENSG00000137764	MAP2K5	HsT17454|MAPKK5|MEK5|PRKMK5	mitogen-activated protein kinase kinase 5	protein-coding
178115	chr4	141306901	141307630	+	0	NA	Intergenic	Intergenic	25352	NR_121625	100507639		NR_121625	ENSG00000248810	LINC02432	-	long intergenic non-protein coding RNA 2432	ncRNA
83845	chr16	28872871	28873030	+	0	NA	intron (NM_001145797, intron 8 of 9)	intron (NM_001145797, intron 8 of 9)	-5538	NM_004320	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
172537	chr4	2361401	2362100	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	3064	NM_001172660	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
113705	chr19	10427271	10427430	+	0	NA	intron (NM_001111307, intron 1 of 14)	L2a|LINE|L2	-3495	NM_001111308	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
103422	chr17	78242251	78242880	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-5751	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
207989	chr7	55469021	55469880	+	0	NA	Intergenic	Intergenic	57430	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
164567	chr3	64006901	64007700	+	0	NA	intron (NR_038286, intron 1 of 2)	intron (NR_038286, intron 1 of 2)	3278	NR_038286	100507062		NR_038286	ENSG00000239653	PSMD6-AS2	-	PSMD6 antisense RNA 2	ncRNA
137987	chr2	201233001	201234000	+	0	NA	promoter-TSS (NM_001080124)	promoter-TSS (NM_001080124)	37	NM_033358	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
127064	chr2	37376221	37376980	+	0	NA	Intergenic	Intergenic	31970	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
210969	chr7	101740821	101741580	+	0	NA	Intergenic	Intergenic	-74807	NM_181500	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
120507	chr19	44806871	44807580	+	0	NA	Intergenic	Intergenic	-1834	NM_001013257	4059		NM_005581	ENSG00000187244	BCAM	AU|B-CAM|CD239|F8/G253|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
45463	chr11	118532451	118532550	+	0	NA	intron (NM_001318757, intron 3 of 7)	intron (NM_001318757, intron 3 of 7)	1308	NR_134852	84866		NM_032780	ENSG00000149582	TMEM25	-	transmembrane protein 25	protein-coding
213137	chr7	131383501	131384130	+	0	NA	intron (NM_001145354, intron 3 of 18)	L2|LINE|L2	55939	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
44788	chr11	112962171	112962330	+	0	NA	intron (NM_001076682, intron 1 of 18)	CpG	830	NM_181351	4684		NM_000615	ENSG00000149294	NCAM1	CD56|MSK39|NCAM	neural cell adhesion molecule 1	protein-coding
173753	chr4	16228451	16229850	+	0	NA	intron (NR_027697, intron 1 of 2)	intron (NR_027697, intron 1 of 2)	2487	NR_027696	202020		NM_152684	ENSG00000263327	TAPT1-AS1	-	TAPT1 antisense RNA 1 (head to head)	ncRNA
134441	chr2	143149921	143150730	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	20906	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
62742	chr13	106562951	106563050	+	0	NA	intron (NM_018011, intron 1 of 3)	AluY|SINE|Alu	5137	NM_018011	55082		NM_018011	ENSG00000134884	ARGLU1	-	arginine and glutamate rich 1	protein-coding
162263	chr3	47294371	47294530	+	0	NA	intron (NM_025010, intron 1 of 9)	L2a|LINE|L2	11506	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
159251	chr3	12930571	12930730	+	0	NA	intron (NM_014869, intron 3 of 13)	intron (NM_014869, intron 3 of 13)	37080	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
51397	chr12	51961671	51962100	+	0	NA	intron (NM_020327, intron 1 of 8)	intron (NM_020327, intron 1 of 8)	8505	NM_020327	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
174233	chr4	37837071	37837650	+	0	NA	intron (NM_018290, intron 3 of 13)	MIR3|SINE|MIR	10674	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
171185	chr3	195682901	195683100	+	0	NA	intron (NR_003265, intron 13 of 14)	AluSz|SINE|Alu	-5498	NR_122105	440993		NM_001013714		MIR570HG	LINC00969	MIR570 host gene	ncRNA
78924	chr15	101241971	101243150	+	0	NA	intron (NM_014918, intron 1 of 2)	intron (NM_014918, intron 1 of 2)	9488	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
30407	chr10	78933951	78934050	+	0	NA	Intergenic	Intergenic	133448	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
100250	chr17	59372271	59372630	+	0	NA	intron (NM_001005404, intron 2 of 4)	intron (NM_001005404, intron 2 of 4)	6367	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
150454	chr21	42495371	42497150	+	0	NA	promoter-TSS (NM_001286506)	promoter-TSS (NM_001286506)	-36	NM_080860	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
6562	chr1	28671501	28671700	+	0	NA	intron (NM_024482, intron 1 of 9)	AluJb|SINE|Alu	2816	NM_001319674	10691		NM_006582	ENSG00000162419	GMEB1	P96PIF|PIF96	glucocorticoid modulatory element binding protein 1	protein-coding
164710	chr3	67941301	67941700	+	0	NA	intron (NR_109992, intron 6 of 6)	intron (NR_109992, intron 6 of 6)	-50092	NM_001252216	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
89908	chr16	89700901	89703280	+	0	NA	promoter-TSS (NM_152339)	promoter-TSS (NM_152339)	-385	NM_152339	124044		NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
107082	chr18	35027251	35027350	+	0	NA	intron (NM_001143826, intron 2 of 7)	MLT1G3|LTR|ERVL-MaLR	-14113	NR_046177	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
110062	chr19	1488851	1488950	+	0	NA	intron (NM_017573, intron 2 of 14)	intron (NM_017573, intron 2 of 14)	1550	NM_017573	54760		NM_017573	ENSG00000115257	PCSK4	PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding
44123	chr11	96068321	96068900	+	0	NA	intron (NM_032427, intron 2 of 4)	AluY|SINE|Alu	-144503	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
79533	chr16	819151	820250	+	0	NA	Intergenic	Intergenic	14257	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
183638	chr5	80242851	80243350	+	0	NA	intron (NM_001174072, intron 1 of 11)	LOR1a|LTR|ERV1	12948	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
144192	chr20	34249271	34249630	+	0	NA	intron (NM_001672, intron 1 of 3)	intron (NM_001672, intron 1 of 3)	8027	NM_001672	434		NM_001672	ENSG00000101440	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
69447	chr14	94218371	94218530	+	0	NA	intron (NM_058237, intron 3 of 24)	(CA)n|Simple_repeat|Simple_repeat	42989	NM_001348142	57718		NM_020958	ENSG00000119698	PPP4R4	CFAP14|KIAA1622|PP4R4	protein phosphatase 4 regulatory subunit 4	protein-coding
8257	chr1	39785071	39785680	+	0	NA	intron (NM_001720, intron 1 of 6)	intron (NM_001720, intron 1 of 6)	3490	NM_001720	656		NM_001720	ENSG00000116985	BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
173904	chr4	25173151	25173250	+	0	NA	intron (NR_037934, intron 1 of 1)	LTR67B|LTR|ERVL	12528	NR_037934	285540		NR_037934		SEPSECS-AS1	-	SEPSECS antisense RNA 1 (head to head)	ncRNA
198009	chr6	90100001	90100200	+	0	NA	intron (NM_021813, intron 4 of 8)	L1MB7|LINE|L1	196743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
188529	chr5	155839451	155839750	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-487564	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
170810	chr3	189304771	189305130	+	0	NA	intron (NM_198485, intron 4 of 5)	intron (NM_198485, intron 4 of 5)	-64356	NR_046722	100874027		NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
41986	chr11	67380601	67381180	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-6713	NM_001166212	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
27007	chr10	26824271	26824430	+	0	NA	intron (NR_145410, intron 1 of 11)	L1MC5|LINE|L1	36608	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
197666	chr6	85459221	85459680	+	0	NA	intron (NM_002526, intron 1 of 8)	intron (NM_002526, intron 1 of 8)	9367	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
144049	chr20	33660501	33660700	+	0	NA	intron (NM_031232, intron 5 of 11)	intron (NM_031232, intron 5 of 11)	-1727	NM_080825	128864		NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
23029	chr1	226409951	226410830	+	0	NA	Intergenic	AluSx|SINE|Alu	-2297	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
227267	chr9	89368821	89369080	+	0	NA	intron (NR_163887, intron 13 of 15)	intron (NR_163887, intron 13 of 15)	50099	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
194619	chr6	33562101	33563130	+	0	NA	Intergenic	AluJo|SINE|Alu	17661	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
173654	chr4	13544451	13545130	+	0	NA	promoter-TSS (NM_001189)	promoter-TSS (NM_001189)	-282	NM_001189	579		NM_001189	ENSG00000109705	NKX3-2	BAPX1|NKX3.2|NKX3B|SMMD	NK3 homeobox 2	protein-coding
62308	chr13	99027121	99027380	+	0	NA	intron (NM_001318849, intron 1 of 54)	AluSg4|SINE|Alu	-11465	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
204682	chr7	5500851	5501350	+	0	NA	exon (NM_001367781, exon 3 of 5)	exon (NM_001367781, exon 3 of 5)	-5183	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
75912	chr15	70087701	70088100	+	0	NA	intron (NM_001282982, intron 2 of 17)	intron (NM_001282982, intron 2 of 17)	6889	NM_001282982	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
49002	chr12	14185921	14186280	+	0	NA	Intergenic	Intergenic	-179532	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
216644	chr8	22117371	22118180	+	0	NA	intron (NM_005144, intron 16 of 18)	intron (NM_005144, intron 16 of 18)	-8356	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
90735	chr17	2024801	2026530	+	0	NA	promoter-TSS (NM_178568)	promoter-TSS (NM_178568)	-331	NM_178568	146760		NM_178568	ENSG00000185924	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor like 1	protein-coding
32239	chr10	101834351	101835000	+	0	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	5196	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
201002	chr6	139881601	139882000	+	0	NA	Intergenic	Intergenic	26950	NR_138542	100132735		NR_038399	ENSG00000231426	FILNC1	-	FOXO induced long non-coding RNA 1	ncRNA
224763	chr9	21974571	21975730	+	0	NA	promoter-TSS (NM_000077)	promoter-TSS (NM_000077)	-293	NM_058197	1029		NM_000077	ENSG00000147889	CDKN2A	ARF|CAI2|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
64631	chr14	31124201	31125200	+	0	NA	intron (NM_015382, intron 26 of 42)	L1PA17|LINE|L1	83093	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
190611	chr5	181179451	181180180	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	12093	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
26854	chr10	24883171	24884080	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	68981	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
191833	chr6	14859901	14860300	+	0	NA	Intergenic	Intergenic	-385969	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
140041	chr2	231227271	231227830	+	0	NA	intron (NR_148040, intron 7 of 21)	intron (NR_148040, intron 7 of 21)	28919	NM_001352755	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
88545	chr16	85451201	85452250	+	0	NA	Intergenic	Intergenic	-145400	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
38637	chr11	46360871	46362180	+	0	NA	promoter-TSS (NM_001105540)	promoter-TSS (NM_001105540)	-81	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
32988	chr10	110515971	110516530	+	0	NA	Intergenic	AluYe5|SINE|Alu	18343	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
150040	chr21	37371471	37371630	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	3993	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
214855	chr7	151347301	151347700	+	0	NA	intron (NM_016118, intron 2 of 14)	AluJo|SINE|Alu	5688	NM_016118	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
226941	chr9	79622721	79623050	+	0	NA	intron (NM_001351563, intron 5 of 17)	intron (NM_001351563, intron 5 of 17)	49708	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
96163	chr17	39701471	39701630	+	0	NA	intron (NM_001382804, intron 1 of 20)	intron (NM_001382804, intron 1 of 20)	1486	NM_004448	2064		NM_004448	ENSG00000141736	ERBB2	CD340|HER-2|HER-2/neu|HER2|MLN 19|MLN-19|NEU|NGL|TKR1|VSCN2|c-ERB-2|c-ERB2|p185(erbB2)	erb-b2 receptor tyrosine kinase 2	protein-coding
84091	chr16	29616221	29616950	+	0	NA	Intergenic	L2b|LINE|L2	-2868	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
118348	chr19	35638371	35638980	+	0	NA	TTS (NM_001319113)	TTS (NM_001319113)	-3070	NM_001300974	2116		NM_014209	ENSG00000105672	ETV2	ER71|ETSRP71	ETS variant transcription factor 2	protein-coding
108757	chr18	77122121	77122380	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	10533	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
199822	chr6	127703051	127703150	+	0	NA	Intergenic	AluYa5|SINE|Alu	125926	NM_001010905	352999		NM_001010905	ENSG00000184530	C6orf58	LEG1	chromosome 6 open reading frame 58	protein-coding
80782	chr16	3198871	3199030	+	0	NA	intron (NM_001370639, intron 3 of 3)	AluJb|SINE|Alu	9828	NM_012360	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
238759	chrX	154348721	154348980	+	0	NA	exon (NM_001456, exon 47 of 47)	exon (NM_001456, exon 47 of 47)	25784	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
318	chr1	979501	980550	+	0	NA	exon (NM_001291367, exon 3 of 5)	exon (NM_001291367, exon 3 of 5)	1148	NM_001369898	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
162686	chr3	48940171	48940330	+	0	NA	intron (NM_001349214, intron 3 of 15)	AluSp|SINE|Alu	-20865	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
9976	chr1	54949001	54949600	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-31328	NM_182532	199964		NM_182532	ENSG00000143001	TMEM61	-	transmembrane protein 61	protein-coding
152873	chr22	22556351	22556650	+	0	NA	promoter-TSS (NM_001318126)	promoter-TSS (NM_001318126)	-574	NM_001318126	23532		NM_006115	ENSG00000185686	PRAME	CT130|MAPE|OIP-4|OIP4	PRAME nuclear receptor transcriptional regulator	protein-coding
77469	chr15	84500151	84501280	+	0	NA	intron (NM_001267536, intron 9 of 10)	CpG	-1860	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
48050	chr12	7015651	7015750	+	0	NA	intron (NM_005768, intron 1 of 12)	intron (NM_005768, intron 1 of 12)	2776	NM_005768	10162		NM_005768	ENSG00000111684	LPCAT3	C3F|LPCAT|LPLAT 5|LPLAT12|LPSAT|MBOAT5|OACT5|nessy	lysophosphatidylcholine acyltransferase 3	protein-coding
130449	chr2	85432471	85432630	+	0	NA	intron (NM_201594, intron 12 of 20)	AluYe5|SINE|Alu	13619	NM_201594								
56970	chr12	120538501	120539350	+	0	NA	intron (NM_001330474, intron 1 of 16)	intron (NM_001330474, intron 1 of 16)	4569	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
200447	chr6	135052901	135053500	+	0	NA	intron (NM_006620, intron 1 of 17)	intron (NM_006620, intron 1 of 17)	1622	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
28473	chr10	49499451	49499560	+	0	NA	intron (NM_001346440, intron 7 of 20)	intron (NM_001346440, intron 7 of 20)	24776	NM_170753	267004		NM_170753		PGBD3	-	piggyBac transposable element derived 3	protein-coding
182171	chr5	56682101	56682300	+	0	NA	Intergenic	Intergenic	-75944	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
217153	chr8	26053351	26053530	+	0	NA	Intergenic	Intergenic	-8027	NM_022659	64641		NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	EBF transcription factor 2	protein-coding
33947	chr10	124625051	124625150	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-78928	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
177737	chr4	122456441	122457480	+	0	NA	promoter-TSS (NM_000586)	promoter-TSS (NM_000586)	-235	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
55191	chr12	101279571	101280530	+	0	NA	promoter-TSS (NM_014503)	promoter-TSS (NM_014503)	-55	NM_014503	27340		NM_014503	ENSG00000120800	UTP20	1A6/DRIM|DRIM	UTP20 small subunit processome component	protein-coding
51199	chr12	50514271	50515080	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	9690	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
126191	chr2	26767851	26768350	+	0	NA	intron (NM_017877, intron 1 of 5)	intron (NM_017877, intron 1 of 5)	3816	NM_017877	54978		NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
172316	chr4	1626051	1626550	+	0	NA	Intergenic	Intergenic	57691	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
224664	chr9	21061101	21061380	+	0	NA	Intergenic	Intergenic	16702	NM_002176	3456		NM_002176	ENSG00000171855	IFNB1	IFB|IFF|IFN-beta|IFNB	interferon beta 1	protein-coding
167339	chr3	128751001	128751730	+	0	NA	intron (NM_004637, intron 1 of 5)	THE1B-int|LTR|ERVL-MaLR	25182	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
28325	chr10	46325071	46325230	+	0	NA	intron (NM_001278688, intron 16 of 16)	intron (NM_001278688, intron 16 of 16)	-12111	NR_165820	653259		NR_165820		AGAP14P	AGAP14|CTGLF11P|bA145E20.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 14, pseudogene	pseudo
110178	chr19	1665571	1666300	+	0	NA	Intergenic	Intergenic	-13320	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
216743	chr8	22456271	22457100	+	0	NA	intron (NM_005605, intron 1 of 13)	L1MD2|LINE|L1	15607	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
219540	chr8	76996251	76996650	+	0	NA	intron (NM_001172086, intron 2 of 4)	intron (NM_001172086, intron 2 of 4)	3628	NM_000318	5828		NM_000318	ENSG00000164751	PEX2	PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3	peroxisomal biogenesis factor 2	protein-coding
101909	chr17	74446651	74447200	+	0	NA	exon (NM_018653, exon 4 of 4)	exon (NM_018653, exon 4 of 4)	13228	NM_018653	55890		NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding
231907	chr9	133090951	133091250	+	0	NA	Intergenic	Intergenic	8561	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
109041	chr18	79744821	79746500	+	0	NA	intron (NM_004715, intron 12 of 12)	CpG	64230	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
197912	chr6	89410101	89410300	+	0	NA	intron (NM_021244, intron 1 of 6)	intron (NM_021244, intron 1 of 6)	2073	NM_021244	58528		NM_021244	ENSG00000025039	RRAGD	HOMG7|RAGD|bA11D8.2.1	Ras related GTP binding D	protein-coding
80991	chr16	4020971	4021330	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	-70706	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
55898	chr12	109724251	109724730	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	10665	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
205527	chr7	18639121	18639380	+	0	NA	intron (NM_014707, intron 8 of 11)	intron (NM_014707, intron 8 of 11)	129980	NM_001204147	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
97833	chr17	44913771	44914200	+	0	NA	intron (NM_001363846, intron 2 of 9)	intron (NM_001363846, intron 2 of 9)	1515	NM_001131019	2670		NM_002055	ENSG00000131095	GFAP	ALXDRD	glial fibrillary acidic protein	protein-coding
135529	chr2	162261051	162261650	+	0	NA	Intergenic	LTR41|LTR|ERVL	-17905	NM_004460	2191		NM_004460	ENSG00000078098	FAP	DPPIV|FAPA|FAPalpha|SIMP	fibroblast activation protein alpha	protein-coding
7667	chr1	35720301	35720500	+	0	NA	3' UTR (NM_001330490, exon 25 of 25)	3' UTR (NM_001330490, exon 25 of 25)	-1516	NM_152374	127703		NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
169975	chr3	179325771	179326130	+	0	NA	intron (NM_001375800, intron 2 of 6)	intron (NM_001375800, intron 2 of 6)	2497	NM_001375807	51193		NM_016331	ENSG00000121864	ZNF639	ANC-2H01|ANC_2H01|ZASC1	zinc finger protein 639	protein-coding
4084	chr1	19096221	19096530	+	0	NA	intron (NM_020765, intron 92 of 105)	intron (NM_020765, intron 92 of 105)	113891	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
214961	chr7	151854921	151855750	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-21707	NR_038926	100505483		NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	ncRNA
197283	chr6	70841351	70841450	+	0	NA	intron (NM_001044305, intron 7 of 10)	intron (NM_001044305, intron 7 of 10)	115660	NM_080742	135152		NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
233866	chrX	1534301	1536600	+	0	NA	intron (NM_178129, intron 1 of 1)	AluSx1|SINE|Alu	1735	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
231657	chr9	131658471	131658830	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-7247	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
222210	chr8	133059781	133061280	+	0	NA	promoter-TSS (NM_006748)	promoter-TSS (NM_006748)	-176	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
101659	chr17	68288571	68289200	+	0	NA	intron (NM_001174166, intron 1 of 6)	MIR3|SINE|MIR	2242	NM_001174166	9120		NM_004694	ENSG00000108932	SLC16A6	MCT6|MCT7	solute carrier family 16 member 6	protein-coding
134712	chr2	144509251	144509550	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-10214	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
219273	chr8	67435271	67435430	+	0	NA	intron (NM_020361, intron 8 of 10)	intron (NM_020361, intron 8 of 10)	91516	NR_136224	102724708		NR_136223		ARFGEF1-DT	-	ARFGEF1 divergent transcript	ncRNA
132445	chr2	105849401	105850250	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-2022	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
227139	chr9	86279721	86280130	+	0	NA	intron (NM_030940, intron 1 of 3)	intron (NM_030940, intron 1 of 3)	2613	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
103950	chr17	79893451	79893550	+	0	NA	Intergenic	Intergenic	-25857	NR_110851	101928738		NR_110851	ENSG00000262188	LINC01978	-	long intergenic non-protein coding RNA 1978	ncRNA
144076	chr20	33699351	33699650	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-13115	NM_005225	1869		NM_005225	ENSG00000101412	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
167033	chr3	126487171	126487350	+	0	NA	intron (NM_144639, intron 18 of 19)	MIRc|SINE|MIR	-11341	NM_001040653	79364		NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
136058	chr2	172710571	172710730	+	0	NA	Intergenic	Intergenic	-25195	NM_001375872	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
238931	chrX	154747121	154747380	+	0	NA	intron (NR_104114, intron 1 of 8)	AluSq2|SINE|Alu	3827	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
211248	chr7	102659501	102659700	+	0	NA	intron (NM_001166339, intron 6 of 8).2	intron (NM_001166339, intron 6 of 8).2	9275	NM_001031618	441273		NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1|SPDYB2L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
170204	chr3	184085651	184085750	+	0	NA	Intergenic	MER92C|LTR|ERV1	-11364	NM_001256613	285242		NM_182589	ENSG00000186038	HTR3E	5-HT3-E|5-HT3E|5-HT3c1	5-hydroxytryptamine receptor 3E	protein-coding
148432	chr20	63967151	63967700	+	0	NA	exon (NM_020713, exon 3 of 17)	exon (NM_020713, exon 3 of 17)	2505	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
239221	chrY	12936121	12936580	+	0	NA	Intergenic	Intergenic	30645	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
147624	chr20	62145571	62145730	+	0	NA	intron (NM_198935, intron 1 of 10)	intron (NM_198935, intron 1 of 10)	1881	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
61218	chr13	49560271	49560900	+	0	NA	intron (NM_001352502, intron 3 of 11)	intron (NM_001352502, intron 3 of 11)	24973	NM_001352500	55213		NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RDEOA	RCC1 and BTB domain containing protein 1	protein-coding
116629	chr19	18299651	18300150	+	0	NA	Intergenic	AluJb|SINE|Alu	17823	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
74682	chr15	62066051	62066150	+	0	NA	promoter-TSS (NM_207322)	promoter-TSS (NM_207322)	-877	NM_207322	145741		NM_207322	ENSG00000198535	C2CD4A	FAM148A|NLF1	C2 calcium dependent domain containing 4A	protein-coding
122234	chr19	48996501	48997000	+	0	NA	intron (NR_135578, intron 1 of 14)	AluSx1|SINE|Alu	2863	NR_135578	10856		NM_006666	ENSG00000183207	RUVBL2	CGI-46|ECP-51|ECP51|INO80J|REPTIN|RVB2|TAP54-beta|TIH2|TIP48|TIP49B	RuvB like AAA ATPase 2	protein-coding
36294	chr11	3826671	3827100	+	0	NA	TTS (NM_001256239)	TTS (NM_001256239)	14074	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
156936	chr22	42313151	42313450	+	0	NA	Intergenic	Intergenic	-29373	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
205845	chr7	24908471	24908780	+	0	NA	intron (NM_015550, intron 1 of 22)	L3|LINE|CR1	-16004	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
203106	chr6	166487101	166487430	+	0	NA	intron (NM_021135, intron 10 of 20)	intron (NM_021135, intron 10 of 20)	-21882	NR_046793	100874353		NR_046793	ENSG00000232082	RPS6KA2-IT1	-	RPS6KA2 intronic transcript 1	ncRNA
25453	chr10	6601221	6602080	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-17066	NR_120634	101928150		NR_120634		LINC02648	-	long intergenic non-protein coding RNA 2648	ncRNA
72759	chr15	39630851	39631150	+	0	NA	intron (NM_001324338, intron 10 of 11)	L2b|LINE|L2	49921	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
205370	chr7	13987971	13988330	+	0	NA	non-coding (NR_120445, exon 4 of 15)	non-coding (NR_120445, exon 4 of 15)	1516	NM_004956	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
103600	chr17	78718971	78719330	+	0	NA	intron (NM_017456, intron 1 of 12)	MIR1_Amn|SINE|MIR	-2118	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
233898	chrX	1599901	1600330	+	0	NA	intron (NM_005088, intron 4 of 4)	CpG-29426	4660	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
23399	chr1	228215271	228215430	+	0	NA	intron (NM_052843, intron 5 of 80)	intron (NM_052843, intron 5 of 80)	-1686	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
39573	chr11	61141651	61142100	+	0	NA	intron (NM_017966, intron 1 of 4)	intron (NM_017966, intron 1 of 4)	19551	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
12057	chr1	98402901	98403300	+	0	NA	Intergenic	L1MA6|LINE|L1	192389	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
8533	chr1	41017701	41018950	+	0	NA	non-coding (NR_037868, exon 1 of 4)	non-coding (NR_037868, exon 1 of 4)	3400	NM_001377532	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
222037	chr8	130206001	130206800	+	0	NA	intron (NM_001362924, intron 5 of 30)	intron (NM_001362924, intron 5 of 30)	90133	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
13314	chr1	113422521	113422600	+	0	NA	intron (NM_152900, intron 1 of 20)	LTR2752|LTR|ERV1	32045	NM_152900	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
147723	chr20	62384251	62384550	+	0	NA	Intergenic	AluJb|SINE|Alu	-2703	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
129890	chr2	73175221	73176400	+	0	NA	Intergenic	CpG	-26764	NM_001134462	344022		NM_001134462	ENSG00000214513	NOTO	-	notochord homeobox	protein-coding
235544	chrX	47239001	47239780	+	0	NA	exon (NM_001371072, exon 3 of 21)	exon (NM_001371072, exon 3 of 21)	6381	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
213269	chr7	134646001	134647980	+	0	NA	intron (NM_001724, intron 1 of 2)	intron (NM_001724, intron 1 of 2)	137	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
45070	chr11	117062321	117063750	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	35393	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
57553	chr12	122205301	122205700	+	0	NA	intron (NM_030765, intron 2 of 2)	G-rich|Low_complexity|Low_complexity	1791	NM_030765	79369		NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
202748	chr6	159032551	159032850	+	0	NA	Intergenic	Intergenic	9653	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
99420	chr17	50093851	50096100	+	0	NA	promoter-TSS (NM_001199900)	promoter-TSS (NM_001199900)	238	NM_001199898	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
212357	chr7	127593721	127594430	+	0	NA	intron (NM_020369, intron 1 of 6)	(TG)n|Simple_repeat|Simple_repeat	339	NM_020369	29999		NM_020369	ENSG00000106328	FSCN3	-	fascin actin-bundling protein 3	protein-coding
122380	chr19	49393651	49394150	+	0	NA	intron (NM_144688, intron 2 of 19)	MIRb|SINE|MIR	5651	NM_144688	147872		NM_144688	ENSG00000161609	KASH5	CCDC155|POF22|SPGF88	KASH domain containing 5	protein-coding
230424	chr9	128140371	128140530	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-9003	NM_005564	3934		NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL|p25	lipocalin 2	protein-coding
179401	chr4	183797821	183798750	+	0	NA	intron (NR_132761, intron 1 of 2)	CpG	263	NR_132761	56977		NM_020225	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
43676	chr11	85781601	85781980	+	0	NA	intron (NM_032943, intron 1 of 18)	THE1C-int|LTR|ERVL-MaLR	-23721	NM_001162953	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
127408	chr2	42100701	42101600	+	0	NA	Intergenic	Intergenic	53129	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
81467	chr16	8896901	8897100	+	0	NA	exon (NM_001321858, exon 26 of 31)	exon (NM_001321858, exon 26 of 31)	-27988	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
51027	chr12	49748171	49748900	+	0	NA	intron (NM_001098576, intron 1 of 9)	intron (NM_001098576, intron 1 of 9)	6726	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
94824	chr17	31372821	31373400	+	0	NA	intron (NM_001042492, intron 57 of 57)	intron (NM_001042492, intron 57 of 57)	-18565	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
66954	chr14	65849701	65850830	+	0	NA	Intergenic	Intergenic	379163	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
47515	chr12	4139451	4139950	+	0	NA	Intergenic	Intergenic	-134062	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
210806	chr7	100870801	100871350	+	0	NA	intron (NM_003302, intron 6 of 8)	AluSz6|SINE|Alu	3039	NR_106935	102466755		NR_106935	ENSG00000283821	MIR6875	hsa-mir-6875	microRNA 6875	ncRNA
145664	chr20	44967331	44968880	+	0	NA	intron (NR_147974, intron 1 of 3)	MIR|SINE|MIR	1593	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
161353	chr3	40454951	40455250	+	0	NA	Intergenic	L2a|LINE|L2	-1792	NR_040100	285266		NR_040100	ENSG00000223797	ENTPD3-AS1	-	ENTPD3 antisense RNA 1	ncRNA
9018	chr1	44730201	44732230	+	0	NA	promoter-TSS (NR_002755)	promoter-TSS (NR_002755)	-47	NR_002755	26830		NR_002755	ENSG00000200169	RNU5D-1	RNU5D|U5DL|U5DS	RNA, U5D small nuclear 1	snRNA
227248	chr9	89350801	89351180	+	0	NA	intron (NM_001282690, intron 14 of 16)	intron (NM_001282690, intron 14 of 16)	32139	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
118861	chr19	38651201	38651700	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	3801	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
33538	chr10	119270901	119272630	+	0	NA	intron (NM_005308, intron 1 of 15)	MIR|SINE|MIR	64194	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
163000	chr3	49732421	49732680	+	0	NA	intron (NM_153273, intron 4 of 5)	MER3|DNA|hAT-Charlie	-8576	NM_013334	29925		NM_013334	ENSG00000173540	GMPPB	LGMDR19|MDDGA14|MDDGB14|MDDGC14	GDP-mannose pyrophosphorylase B	protein-coding
22636	chr1	223714901	223715350	+	0	NA	intron (NM_001748, intron 1 of 20)	intron (NM_001748, intron 1 of 20)	2586	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
178754	chr4	153222901	153223580	+	0	NA	intron (NM_001375512, intron 2 of 12)	CpG	18797	NM_001375512	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
69051	chr14	91869801	91870930	+	0	NA	exon (NM_001384162, exon 12 of 12)	exon (NM_001384162, exon 12 of 12)	-2829	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
151920	chr22	19028571	19028730	+	0	NA	intron (NR_110533, intron 5 of 5)	AluJr|SINE|Alu	6026	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
123111	chr19	51687651	51688180	+	0	NA	non-coding (NR_108100, exon 2 of 2)	non-coding (NR_108100, exon 2 of 2)	-1467	NM_001316994	147650		NM_207324	ENSG00000182310	SPACA6	LET7EH|LINC00085|NCRNA00085|SPACA6P	sperm acrosome associated 6	protein-coding
3846	chr1	16917301	16918330	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-4116	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
239433	chrY	56694521	56694780	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-259605	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
75858	chr15	69664651	69664950	+	0	NA	intron (NR_126437, intron 3 of 5)	intron (NR_126437, intron 3 of 5)	72600	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
211139	chr7	102542871	102543180	+	0	NA	intron (NM_001097615, intron 4 of 8)	AluSg|SINE|Alu	1763	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
89162	chr16	88536721	88536980	+	0	NA	3' UTR (NM_153813, exon 10 of 10)	3' UTR (NM_153813, exon 10 of 10)	-5797	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
172425	chr4	1859821	1860080	+	0	NA	Intergenic	AluSc5|SINE|Alu	-3794	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
231422	chr9	131211901	131212200	+	0	NA	intron (NM_001318325, intron 5 of 10)	MER11B|LTR|ERVK	21911	NM_001318325	8021		NM_005085	ENSG00000126883	NUP214	CAIN|CAN|IIAE9	nucleoporin 214	protein-coding
91256	chr17	3966821	3967100	+	0	NA	Intergenic	Intergenic	-2496	NM_174956	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
141921	chr20	1134521	1134780	+	0	NA	intron (NM_178578, intron 4 of 7)	intron (NM_178578, intron 4 of 7)	16048	NM_001323410	9491		NM_006814	ENSG00000125818	PSMF1	PI31	proteasome inhibitor subunit 1	protein-coding
107633	chr18	48946901	48947100	+	0	NA	intron (NM_005904, intron 2 of 3)	intron (NM_005904, intron 2 of 3)	2333	NM_001190822	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
88458	chr16	85003921	85004380	+	0	NA	intron (NM_017740, intron 1 of 7)	L2c|LINE|L2	7385	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
49194	chr12	15590171	15590830	+	0	NA	intron (NM_030671, intron 13 of 13)	intron (NM_030671, intron 13 of 13)	43889	NM_030668	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
33769	chr10	122565701	122566050	+	0	NA	intron (NM_007329, intron 1 of 52)	MamGypsy2-LTR|LTR|Gypsy	5121	NM_001377530	1755		NM_004406	ENSG00000187908	DMBT1	GP340|SAG|SALSA|muclin	deleted in malignant brain tumors 1	protein-coding
75151	chr15	64619801	64620930	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	82916	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
188738	chr5	157538721	157539180	+	0	NA	intron (NM_033274, intron 3 of 22)	AluSq2|SINE|Alu	36825	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
71159	chr14	105024471	105025350	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-3827	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
187091	chr5	140261421	140261980	+	0	NA	intron (NM_002622, intron 3 of 3)	intron (NM_002622, intron 3 of 3)	41401	NM_002622	5201		NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
92632	chr17	10118701	10118900	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	79806	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
197859	chr6	89072921	89073180	+	0	NA	Intergenic	MER61F|LTR|ERV1	-7701	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
178653	chr4	152455351	152455750	+	0	NA	intron (NM_001349798, intron 2 of 13)	MLT1D-int|LTR|ERVL-MaLR	33866	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
171202	chr3	195710321	195711090	+	0	NA	intron (NR_122105, intron 4 of 4)	intron (NR_122105, intron 4 of 4)	-10177	NM_152673	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
163281	chr3	50316451	50317750	+	0	NA	TTS (NM_033158)	TTS (NM_033158)	-4719	NM_153281	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
162328	chr3	47576551	47576850	+	0	NA	intron (NM_006574, intron 2 of 4)	AluSx1|SINE|Alu	2165	NM_006574	10675		NM_006574	ENSG00000114646	CSPG5	NGC	chondroitin sulfate proteoglycan 5	protein-coding
64339	chr14	24006251	24007700	+	0	NA	promoter-TSS (NR_102688)	promoter-TSS (NR_102688)	-109	NR_102687	728635		NM_001082488		DHRS4L1	SDR25C4	dehydrogenase/reductase 4 like 1 (pseudogene)	pseudo
45825	chr11	119363801	119364600	+	0	NA	promoter-TSS (NM_171997)	promoter-TSS (NM_171997)	8	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
112884	chr19	7620471	7621830	+	0	NA	exon (NM_020196, exon 13 of 19)	exon (NM_020196, exon 13 of 19)	3711	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
155493	chr22	38568051	38568750	+	0	NA	promoter-TSS (NM_001278208)	promoter-TSS (NM_001278208)	9	NM_001278208	11144		NM_007068	ENSG00000100206	DMC1	DMC1H|LIM15|dJ199H16.1	DNA meiotic recombinase 1	protein-coding
21434	chr1	205397021	205397350	+	0	NA	intron (NR_037583, intron 2 of 3)	intron (NR_037583, intron 2 of 3)	23933	NR_038425	284576		NR_038425	ENSG00000226235	LEMD1-AS1	-	LEMD1 antisense RNA 1	ncRNA
115413	chr19	15295721	15295980	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluSq|SINE|Alu	-15399	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
17312	chr1	156457101	156459000	+	0	NA	Intergenic	AluSg|SINE|Alu	-28502	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
145763	chr20	45316851	45316950	+	0	NA	exon (NM_001281449, exon 12 of 12)	exon (NM_001281449, exon 12 of 12)	-8371	NM_003833	8785		NM_003833	ENSG00000124159	MATN4	-	matrilin 4	protein-coding
114015	chr19	10877171	10877330	+	0	NA	intron (NM_001370089, intron 1 of 14)	intron (NM_001370089, intron 1 of 14)	4821	NM_001370089	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
154095	chr22	30957951	30958450	+	0	NA	intron (NM_014941, intron 3 of 26)	intron (NM_014941, intron 3 of 26)	10087	NM_001303257	22880		NM_014941	ENSG00000133422	MORC2	CMT2Z|DIGFAN|ZCW3|ZCWCC1	MORC family CW-type zinc finger 2	protein-coding
118955	chr19	38840071	38840880	+	0	NA	exon (NM_001385651, exon 7 of 12)	exon (NM_001385651, exon 7 of 12)	-8681	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
17588	chr1	156858471	156858700	+	0	NA	exon (NM_014215, exon 1 of 22)	exon (NM_014215, exon 1 of 22)	532	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
53043	chr12	57617651	57618250	+	0	NA	TTS (NR_120450)	TTS (NR_120450)	-1577	NR_166678	65012		NM_133489	ENSG00000293429	SLC26A10P	SLC26A10	solute carrier family 26 member 10, pseudogene	pseudo
82685	chr16	19907221	19907850	+	0	NA	Intergenic	Intergenic	-21901	NM_001304771	51704		NM_016235	ENSG00000167191	GPRC5B	MLC3|RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding
175988	chr4	81642601	81642800	+	0	NA	Intergenic	Intergenic	-170793	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
164548	chr3	63969921	63970780	+	0	NA	intron (NM_001128149, intron 1 of 8)	intron (NM_001128149, intron 1 of 8)	2556	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
83510	chr16	27445621	27445880	+	0	NA	intron (NM_181078, intron 7 of 8)	MIRc|SINE|MIR	7643	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
21252	chr1	204379271	204379900	+	0	NA	Intergenic	AluSz|SINE|Alu	-9866	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
178903	chr4	158567751	158567850	+	0	NA	intron (NM_001363776, intron 2 of 18)	LTR12C|LTR|ERV1	45918	NM_021634	59350		NM_021634	ENSG00000171509	RXFP1	LGR7|RXFPR1	relaxin family peptide receptor 1	protein-coding
232205	chr9	134332951	134333250	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	6645	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
56734	chr12	120127471	120127850	+	0	NA	3' UTR (NM_006836, exon 58 of 58)	3' UTR (NM_006836, exon 58 of 58)	-10907	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
107734	chr18	50203771	50204130	+	0	NA	Intergenic	Intergenic	-8803	NM_001080467	4645		NM_001080467	ENSG00000167306	MYO5B	DIAR2|MVID1|PFIC10	myosin VB	protein-coding
119394	chr19	40230351	40230950	+	0	NA	3' UTR (NM_001330511, exon 12 of 12)	3' UTR (NM_001330511, exon 12 of 12)	-3961	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
159314	chr3	13010621	13010930	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-23674	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
118605	chr19	36703551	36703650	+	0	NA	promoter-TSS (NM_001363651)	promoter-TSS (NM_001363651)	-81	NM_001363651	163081		NM_152603	ENSG00000189042	ZNF567	-	zinc finger protein 567	protein-coding
111408	chr19	3770401	3771280	+	0	NA	exon (NM_001319074, exon 3 of 3)	exon (NM_001319074, exon 3 of 3)	1388	NM_001319074	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
90103	chr16	90049951	90050380	+	0	NA	Intergenic	Intergenic	-2382	NR_027336	100130015		NR_027335	ENSG00000290738	URAHP	URAH	urate (hydroxyiso-) hydrolase, pseudogene	pseudo
222128	chr8	131986671	131987130	+	0	NA	intron (NM_001323558, intron 17 of 23)	intron (NM_001323558, intron 17 of 23)	70127	NM_001323557	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
19809	chr1	182611821	182612380	+	0	NA	Intergenic	Intergenic	-3040	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
159087	chr3	12336101	12336380	+	0	NA	intron (NM_001374261, intron 2 of 6)	intron (NM_001374261, intron 2 of 6)	-15177	NM_015869	5468		NM_005037	ENSG00000132170	PPARG	CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARG5|PPARgamma	peroxisome proliferator activated receptor gamma	protein-coding
102086	chr17	74964871	74965330	+	0	NA	intron (NM_030630, intron 1 of 18)	intron (NM_030630, intron 1 of 18)	-5589	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
37245	chr11	14620201	14620400	+	0	NA	intron (NM_148976, intron 1 of 10)	intron (NM_148976, intron 1 of 10)	23334	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
46	chr1	201051	201150	+	0	NA	Intergenic	Intergenic	5497	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
77593	chr15	85246401	85246950	+	0	NA	intron (NM_001310153, intron 9 of 10)	intron (NM_001310153, intron 9 of 10)	6324	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
230209	chr9	127819221	127819480	+	0	NA	intron (NM_001114753, intron 10 of 14)	MIRb|SINE|MIR	3284	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
100207	chr17	59154531	59157130	+	0	NA	promoter-TSS (NM_182620)	promoter-TSS (NM_182620)	84	NM_018304	55771		NM_018304	ENSG00000068489	PRR11	-	proline rich 11	protein-coding
207710	chr7	46352371	46352550	+	0	NA	Intergenic	Intergenic	344662	NR_134575	730338		NR_134575	ENSG00000233539	LOC730338	-	uncharacterized LOC730338	ncRNA
193031	chr6	28446851	28447530	+	0	NA	Intergenic	Intergenic	-3699	NM_001012455	222696		NM_001012455	ENSG00000187987	ZSCAN23	ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1	zinc finger and SCAN domain containing 23	protein-coding
192662	chr6	26204001	26205930	+	0	NA	TTS (NM_003545)	TTS (NM_003545)	355	NM_003545	8367		NM_003545	ENSG00000276966	H4C5	H4-16|H4/j|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C6|H4C8|H4C9|H4FJ|HIST1H4E|TEBIVANED3|TEVANED3	H4 clustered histone 5	protein-coding
193304	chr6	30097071	30097430	+	0	NA	Intergenic	L2c|LINE|L2	-7990	NR_126470	104533120		NR_126470	ENSG00000231226	TRIM31-AS1	-	TRIM31 antisense RNA 1	ncRNA
80586	chr16	2886001	2886200	+	0	NA	intron (NM_138439, intron 1 of 3)	L1MB8|LINE|L1	2885	NM_138439	114984		NM_138439	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
226675	chr9	75077121	75077580	+	0	NA	intron (NM_001127603, intron 3 of 7)	intron (NM_001127603, intron 3 of 7)	10805	NM_001127603	54981		NM_017881	ENSG00000106733	NMRK1	C9orf95|NRK1|bA235O14.2	nicotinamide riboside kinase 1	protein-coding
85478	chr16	50695501	50695700	+	0	NA	intron (NR_163434, intron 1 of 12)	L2a|LINE|L2	-1348	NM_022162	64127		NM_022162	ENSG00000167207	NOD2	ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS	nucleotide binding oligomerization domain containing 2	protein-coding
223785	chr8	144676351	144676650	+	0	NA	intron (NM_001308208, intron 1 of 10)	LTR12D|LTR|ERV1	9346	NM_001308208	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
186932	chr5	139636901	139638060	+	0	NA	Intergenic	CpG	-9819	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
200004	chr6	128731171	128731330	+	0	NA	Intergenic	L1M5|LINE|L1	-151888	NM_000426	3908		NM_000426	ENSG00000196569	LAMA2	LAMM|MDC1A	laminin subunit alpha 2	protein-coding
120550	chr19	44954581	44956200	+	0	NA	promoter-TSS (NM_001294)	promoter-TSS (NM_001294)	10	NM_001294	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
6109	chr1	27335121	27335380	+	0	NA	intron (NR_037577, intron 6 of 6)	intron (NR_037577, intron 6 of 6)	-6772	NM_032872	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
137680	chr2	197475801	197476200	+	0	NA	TTS (NM_025147)	TTS (NM_025147)	10903	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
31892	chr10	100285821	100287480	+	0	NA	promoter-TSS (NM_001282436)	promoter-TSS (NM_001282436)	30	NM_173809	282991		NM_173809	ENSG00000196072	BLOC1S2	BLOS2|BORCS2|CEAP|CEAP11	biogenesis of lysosomal organelles complex 1 subunit 2	protein-coding
78171	chr15	90511151	90512050	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-18323	NM_001042574	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
158538	chr3	3799201	3800180	+	0	NA	5' UTR (NM_001324188, exon 1 of 3)	5' UTR (NM_001324188, exon 1 of 3)	259	NM_001324189	57633		NM_020873	ENSG00000175928	LRRN1	FIGLER3|NLRR-1|NLRR1	leucine rich repeat neuronal 1	protein-coding
200331	chr6	133920321	133920580	+	0	NA	Intergenic	AluSz|SINE|Alu	31337	NM_198392	6943		NM_003206	ENSG00000118526	TCF21	POD1|bHLHa23	transcription factor 21	protein-coding
16616	chr1	155077221	155077900	+	0	NA	Intergenic	Intergenic	-1277	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
237186	chrX	107716001	107717700	+	0	NA	promoter-TSS (NM_001015881)	promoter-TSS (NM_001015881)	212	NM_004089	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
221153	chr8	119824551	119824650	+	0	NA	intron (NM_003184, intron 2 of 25)	THE1B-int|LTR|ERVL-MaLR	8241	NM_003184	6873		NM_003184	ENSG00000064313	TAF2	CIF150|MRT40|TAF2B|TAFII150	TATA-box binding protein associated factor 2	protein-coding
20535	chr1	198693221	198693750	+	0	NA	TTS (NR_052021).2	TTS (NR_052021).2	54445	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
170429	chr3	185823351	185823950	+	0	NA	intron (NM_006548, intron 1 of 15)	CpG	1392	NM_001291869	10644		NM_006548	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2	insulin like growth factor 2 mRNA binding protein 2	protein-coding
31923	chr10	100526301	100526500	+	0	NA	exon (NM_005004, exon 4 of 5)	exon (NM_005004, exon 4 of 5)	3471	NM_005004	4714		NM_005004	ENSG00000166136	NDUFB8	ASHI|CI-ASHI|MC1DN32	NADH:ubiquinone oxidoreductase subunit B8	protein-coding
225076	chr9	33289551	33291180	+	0	NA	promoter-TSS (NM_002504)	promoter-TSS (NM_002504)	-151	NM_002504	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
161059	chr3	38028871	38030050	+	0	NA	intron (NM_006225, intron 1 of 14)	CpG	182	NM_006225	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
52799	chr12	56724721	56726400	+	0	NA	promoter-TSS (NM_001113203)	promoter-TSS (NM_001113203)	-261	NM_001113202	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
113936	chr19	10743171	10743330	+	0	NA	intron (NM_001005362, intron 1 of 19)	L2b|LINE|L2	24846	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
135390	chr2	160491801	160492000	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	1907	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
153629	chr22	28741351	28743530	+	0	NA	promoter-TSS (NM_145862)	promoter-TSS (NM_145862)	-241	NM_001318316	150274		NM_172002	ENSG00000100209	HSCB	DNAJC20|HSC20|JAC1|SIDBA5	HscB mitochondrial iron-sulfur cluster cochaperone	protein-coding
2956	chr1	11911751	11912830	+	0	NA	Intergenic	L2b|LINE|L2	4136	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
209480	chr7	76603271	76603830	+	0	NA	intron (NR_029411, intron 2 of 2)	AluSp|SINE|Alu	23753	NM_012230	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
134831	chr2	148630551	148630850	+	0	NA	Intergenic	L1MB2|LINE|L1	-14051	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
149207	chr21	25383601	25383800	+	0	NA	Intergenic	Intergenic	48001	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
175549	chr4	75499551	75499650	+	0	NA	intron (NR_037914, intron 3 of 8)	L1MA4|LINE|L1	9696	NR_103725	25898		NM_015436	ENSG00000163743	RCHY1	ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363	ring finger and CHY zinc finger domain containing 1	protein-coding
137569	chr2	197254871	197256070	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	47049	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
164989	chr3	71331221	71331680	+	0	NA	intron (NM_001349340, intron 3 of 19)	LTR12C|LTR|ERV1	-26679	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
207567	chr7	44912971	44913330	+	0	NA	Intergenic	Intergenic	-27620	NM_033224	5814		NM_033224	ENSG00000146676	PURB	PURBETA	purine rich element binding protein B	protein-coding
34186	chr10	128149601	128150750	+	0	NA	Intergenic	CpG	-23752	NM_001145966	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
23691	chr1	231529931	231531030	+	0	NA	intron (NR_028398, intron 2 of 10)	AluY|SINE|Alu	1811	NM_005999	7257		NM_005999	ENSG00000116918	TSNAX	C3PO|TRAX	translin associated factor X	protein-coding
38720	chr11	46681371	46681530	+	0	NA	intron (NM_004308, intron 5 of 12)	intron (NM_004308, intron 5 of 12)	19169	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
210587	chr7	100370601	100370800	+	0	NA	Intergenic	AluSc5|SINE|Alu	-2787	NM_178273	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
236818	chrX	79172671	79173300	+	0	NA	3' UTR (NM_032553, exon 3 of 3)	3' UTR (NM_032553, exon 3 of 3)	28297	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
10397	chr1	65065701	65065900	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	1946	NM_001321853	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
78878	chr15	100596371	100597300	+	0	NA	intron (NR_148017, intron 1 of 6)	LTR43B|LTR|ERV1	5349	NR_148018	55180		NM_018148	ENSG00000140471	LINS1	LINS|MRT27|WINS1	lines homolog 1	protein-coding
46374	chr11	126264421	126264680	+	0	NA	intron (NM_001177842, intron 10 of 12)	intron (NM_001177842, intron 10 of 12)	4345	NM_003139	6734		NM_003139	ENSG00000182934	SRPRA	DP|SRPR|Sralpha	SRP receptor subunit alpha	protein-coding
8163	chr1	39494921	39495200	+	0	NA	intron (NM_181809, intron 1 of 6)	intron (NM_181809, intron 1 of 6)	3424	NM_181809	353500		NM_181809	ENSG00000183682	BMP8A	OP-2|Op2	bone morphogenetic protein 8a	protein-coding
169641	chr3	171372771	171373130	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	87455	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
134516	chr2	143434821	143435280	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	305631	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
103878	chr17	79781871	79782780	+	0	NA	3' UTR (NM_032647, exon 4 of 4)	3' UTR (NM_032647, exon 4 of 4)	4147	NM_032647	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
87157	chr16	69317871	69318230	+	0	NA	intron (NM_013245, intron 3 of 10)	AluJo|SINE|Alu	6700	NM_013245	27183		NM_013245	ENSG00000132612	VPS4A	CIMDAG|SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
125024	chr2	9580771	9581150	+	0	NA	Intergenic	AluSq2|SINE|Alu	-25130	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
151452	chr21	46170201	46171200	+	0	NA	intron (NM_032261, intron 1 of 3)	SVA_F|Retroposon|SVA	13759	NM_001142854	84221		NM_032261	ENSG00000160284	SPATC1L	C21orf56	spermatogenesis and centriole associated 1 like	protein-coding
99893	chr17	56819501	56820100	+	0	NA	intron (NM_001085430, intron 4 of 7)	intron (NM_001085430, intron 4 of 7)	14120	NM_001085430	339210		NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
196025	chr6	42029551	42030530	+	0	NA	5' UTR (NM_001287434, exon 2 of 5)	5' UTR (NM_001287434, exon 2 of 5)	18854	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
47840	chr12	6606001	6606900	+	0	NA	promoter-TSS (NM_001297553)	promoter-TSS (NM_001297553)	1	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
200837	chr6	138107051	138108150	+	0	NA	promoter-TSS (NM_022121)	promoter-TSS (NM_022121)	-181	NM_022121	64065		NM_022121	ENSG00000112378	PERP	EKVP7|KCP1|KRTCAP1|OLMS2|PIGPC1|THW|dJ496H19.1	p53 apoptosis effector related to PMP22	protein-coding
130839	chr2	87153251	87153550	+	0	NA	Intergenic	MER52-int|LTR|ERV1	-41386	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
44316	chr11	102386421	102386880	+	0	NA	Intergenic	L1MA8|LINE|L1	39276	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
101898	chr17	74380471	74380850	+	0	NA	Intergenic	Intergenic	13154	NM_001331077	350383		NM_181790	ENSG00000257008	GPR142	GPRg1b|PGR2	G protein-coupled receptor 142	protein-coding
99922	chr17	57005151	57005450	+	0	NA	intron (NM_021626, intron 12 of 12)	intron (NM_021626, intron 12 of 12)	27169	NM_021626	59342		NM_021626	ENSG00000121064	SCPEP1	HSCP1|RISC	serine carboxypeptidase 1	protein-coding
177312	chr4	109658801	109659300	+	0	NA	exon (NM_017918, exon 2 of 8)	exon (NM_017918, exon 2 of 8)	44395	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
87359	chr16	70382821	70383300	+	0	NA	intron (NM_006927, intron 5 of 6)	intron (NM_006927, intron 5 of 6)	36157	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
111064	chr19	3140721	3141180	+	0	NA	TTS (NR_110670)	TTS (NR_110670)	4917	NM_002068	2769		NM_002068	ENSG00000060558	GNA15	GNA16|HG1L	G protein subunit alpha 15	protein-coding
10199	chr1	61787901	61788100	+	0	NA	intron (NM_176877, intron 8 of 42)	intron (NM_176877, intron 8 of 42)	45520	NM_176877	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
66230	chr14	61331901	61332150	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	10582	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
231600	chr9	131555721	131556630	+	0	NA	exon (NM_001365666, exon 3 of 4)	exon (NM_001365666, exon 3 of 4)	10652	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
234080	chrX	8981801	8982300	+	0	NA	Intergenic	Intergenic	52077	NM_205849	171483		NM_173696	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9 member B	protein-coding
131106	chr2	89840951	89841050	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-203093	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
36467	chr11	6179401	6179800	+	0	NA	Intergenic	L1P1|LINE|L1	-9274	NM_001004052	255725		NM_001004052	ENSG00000255307	OR52B2	OR11-70	olfactory receptor family 52 subfamily B member 2	protein-coding
160981	chr3	37219001	37219530	+	0	NA	Intergenic	Intergenic	-24006	NM_002078	2803		NM_002078	ENSG00000144674	GOLGA4	CRPF46|GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
132769	chr2	109810071	109810230	+	0	NA	intron (NM_032260, intron 7 of 19)	AluSc|SINE|Alu	15541	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
14674	chr1	145820571	145821780	+	0	NA	intron (NM_014455, intron 1 of 8)	intron (NM_014455, intron 1 of 8)	2920	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
202767	chr6	159055371	159055530	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-10298	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
84629	chr16	30707971	30708130	+	0	NA	intron (NM_006662, intron 6 of 33)	intron (NM_006662, intron 6 of 33)	-2487	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
59745	chr13	29939151	29939450	+	0	NA	intron (NR_033889, intron 3 of 4)	intron (NR_033889, intron 3 of 4)	2769	NR_033889	440131		NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
41591	chr11	66350501	66350950	+	0	NA	intron (NR_135761, intron 1 of 1)	AluSz|SINE|Alu	2734	NR_135761	102724064		NR_135761	ENSG00000255468	B4GAT1-DT	-	B4GAT1 divergent transcript	ncRNA
45599	chr11	118897821	118898080	+	0	NA	TTS (NM_001716)	TTS (NM_001716)	4558	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
231950	chr9	133137071	133137650	+	0	NA	intron (NM_001042368, intron 1 of 17)	L2a|LINE|L2	-6203	NM_001271774	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
62546	chr13	99654121	99654380	+	0	NA	intron (NM_206808, intron 1 of 8)	MER115|DNA|hAT-Tip100	11191	NR_036191	100422861		NR_036191	ENSG00000263615	MIR4306	mir-4306	microRNA 4306	ncRNA
174421	chr4	39453071	39453230	+	0	NA	TTS (NM_001024921)	TTS (NM_001024921)	5772	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
155215	chr22	37867621	37868880	+	0	NA	intron (NM_016091, intron 7 of 12)	AluSz|SINE|Alu	18831	NM_016091	51386		NM_016091	ENSG00000100129	EIF3L	EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005	eukaryotic translation initiation factor 3 subunit L	protein-coding
204339	chr7	2842001	2842830	+	0	NA	intron (NM_007353, intron 1 of 3)	AluJb|SINE|Alu	1893	NM_007353	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
115295	chr19	14573251	14573580	+	0	NA	Intergenic	AluJo|SINE|Alu	-1349	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
14715	chr1	145957051	145958380	+	0	NA	exon (NM_153713, exon 1 of 6)	exon (NM_153713, exon 1 of 6)	302	NM_153713	128077		NM_153713	ENSG00000271601	LIX1L	-	limb and CNS expressed 1 like	protein-coding
192916	chr6	27669401	27669800	+	0	NA	Intergenic	Intergenic	-24435	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
134337	chr2	136114431	136114700	+	0	NA	3' UTR (NM_003467, exon 2 of 2)	3' UTR (NM_003467, exon 2 of 2)	1670	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
61142	chr13	48653171	48654530	+	0	NA	promoter-TSS (NM_001308476)	promoter-TSS (NM_001308476)	-79	NM_001308465	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
186505	chr5	138341201	138342050	+	0	NA	intron (NM_001350194, intron 2 of 4)	intron (NM_001350194, intron 2 of 4)	-3270	NM_001364026	995		NM_001790	ENSG00000158402	CDC25C	CDC25|PPP1R60	cell division cycle 25C	protein-coding
29926	chr10	73360871	73361480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2311	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
234201	chrX	12950901	12952150	+	0	NA	Intergenic	Intergenic	-8225	NR_030727	349408		NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
108700	chr18	77061051	77061600	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-44270	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
142090	chr20	2521501	2522150	+	0	NA	intron (NM_001282495, intron 1 of 6)	intron (NM_001282495, intron 1 of 6)	2697	NM_001282495	79175		NM_024325	ENSG00000088876	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
199478	chr6	118580771	118581500	+	0	NA	intron (NM_206921, intron 2 of 5)	HUERS-P3-int|LTR|ERV1	32839	NM_002667	5350		NM_002667	ENSG00000198523	PLN	CMD1P|CMH18|PLB	phospholamban	protein-coding
81294	chr16	4681471	4682330	+	0	NA	intron (NM_001142291, intron 12 of 15)	MER68B|LTR|ERVL	10582	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
5448	chr1	25610721	25611600	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-5631	NM_020379	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
165392	chr3	95704701	95705080	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	-21697	NR_077228	100287639		NR_077228	ENSG00000293294	MTHFD2P1	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1	pseudo
191443	chr6	10682771	10683130	+	0	NA	intron (NM_001354357, intron 4 of 5)	intron (NM_001354357, intron 4 of 5)	11659	NM_001145020	347744		NM_001145020	ENSG00000137434	C6orf52	-	chromosome 6 open reading frame 52	protein-coding
225227	chr9	34190451	34191130	+	0	NA	intron (NM_001171201, intron 1 of 5)	AluJb|SINE|Alu	11747	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
41262	chr11	65836871	65837030	+	0	NA	intron (NM_152760, intron 1 of 12)	L1PA8|LINE|L1	2987	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
211267	chr7	102687101	102687400	+	0	NA	intron (NR_146066, intron 8 of 11)	AluJo|SINE|Alu	-15515	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
167682	chr3	130105971	130106780	+	0	NA	intron (NR_024252, intron 1 of 4)	intron (NR_024252, intron 1 of 4)	5058	NR_024252	729375		NR_024252	ENSG00000291081	FAM86HP	-	family with sequence similarity 86, member A pseudogene	pseudo
188390	chr5	152514871	152515030	+	0	NA	Intergenic	Intergenic	-109671	NM_020167	56923		NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
180018	chr5	1035351	1035650	+	0	NA	intron (NM_001271082, intron 8 of 10).2	intron (NM_001271082, intron 8 of 10).2	26538	NM_001271082	85409		NM_033120	ENSG00000145506	NKD2	Naked2	NKD inhibitor of WNT signaling pathway 2	protein-coding
195626	chr6	37818701	37820500	+	0	NA	promoter-TSS (NM_021943)	promoter-TSS (NM_021943)	-127	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
73578	chr15	44500651	44500950	+	0	NA	intron (NM_016396, intron 8 of 12)	intron (NM_016396, intron 8 of 12)	36100	NR_034171	645212		NR_034170	ENSG00000179523	EIF3J-DT	EIF3J-AS1	EIF3J divergent transcript	ncRNA
202510	chr6	158538821	158539080	+	0	NA	intron (NM_001376856, intron 1 of 13)	L2b|LINE|L2	2310	NM_001376817	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
200496	chr6	135499501	135499730	+	0	NA	intron (NR_152842, intron 2 of 5)	intron (NR_152842, intron 2 of 5)	1814	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
112011	chr19	5018971	5019130	+	0	NA	intron (NM_001370093, intron 2 of 11)	intron (NM_001370093, intron 2 of 11)	49937	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
152091	chr22	19768571	19768930	+	0	NA	intron (NM_005992, intron 8 of 9)	intron (NM_005992, intron 8 of 9)	7972	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
225343	chr9	34641521	34641780	+	0	NA	Intergenic	LTR56|LTR|ERV1	-3824	NM_001282207	10280		NM_005866	ENSG00000147955	SIGMAR1	ALS16|DSMA2|HMNR2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding
12441	chr1	107141151	107141950	+	0	NA	intron (NM_001372170, intron 1 of 7)	CpG	215	NM_001372170	22854		NM_014917	ENSG00000162631	NTNG1	Lmnt1|NetG1|NetrinG1	netrin G1	protein-coding
20114	chr1	192506651	192506950	+	0	NA	Intergenic	Intergenic	-68973	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
225192	chr9	34048381	34049850	+	0	NA	promoter-TSS (NM_018449)	promoter-TSS (NM_018449)	84	NM_001370059	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
38838	chr11	47319901	47320600	+	0	NA	intron (NR_164842, intron 29 of 33)	AluSg7|SINE|Alu	32452	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
6132	chr1	27359701	27362250	+	0	NA	exon (NM_001297609, exon 13 of 28)	exon (NM_001297609, exon 13 of 28)	5986	NM_001297609	9064		NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
175576	chr4	75653901	75654380	+	0	NA	intron (NM_203505, intron 7 of 11)	intron (NM_203505, intron 7 of 11)	19019	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
186164	chr5	134186901	134187730	+	0	NA	Intergenic	AluSq|SINE|Alu	-10282	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
39605	chr11	61356001	61356200	+	0	NA	intron (NM_153611, intron 3 of 6)	AluYm1|SINE|Alu	1214	NM_001161452	220002		NM_153611	ENSG00000162144	CYB561A3	CYBASC3|LCYTB	cytochrome b561 family member A3	protein-coding
217615	chr8	29990801	29991550	+	0	NA	Intergenic	Intergenic	-33827	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
56472	chr12	116123621	116123880	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	24904	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
165143	chr3	71787551	71787850	+	0	NA	Intergenic	Intergenic	-2552	NM_021935	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
69826	chr14	99224451	99225200	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	47372	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
34208	chr10	129141051	129141150	+	0	NA	Intergenic	Intergenic	228267	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
70729	chr14	103352701	103353100	+	0	NA	Intergenic	AluJb|SINE|Alu	15051	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
64137	chr14	22872401	22873600	+	0	NA	intron (NM_014045, intron 2 of 6)	intron (NM_014045, intron 2 of 6)	1260	NM_001329226	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
225049	chr9	33166501	33168980	+	0	NA	promoter-TSS (NM_001497)	promoter-TSS (NM_001497)	-119	NR_108108	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
102534	chr17	75823371	75823730	+	0	NA	intron (NM_001080419, intron 15 of 15)	intron (NM_001080419, intron 15 of 15)	20854	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
38131	chr11	35257021	35257680	+	0	NA	3' UTR (NM_001252652, exon 12 of 12)	3' UTR (NM_001252652, exon 12 of 12)	94400	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
110236	chr19	1773371	1773930	+	0	NA	intron (NM_001080488, intron 1 of 1)	intron (NM_001080488, intron 1 of 1)	20144	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
135738	chr2	169505971	169506130	+	0	NA	3' UTR (NM_152384, exon 12 of 12)	3' UTR (NM_152384, exon 12 of 12)	-3652	NM_006063	10324		NM_006063	ENSG00000239474	KLHL41	KBTBD10|Krp1|SARCOSIN	kelch like family member 41	protein-coding
40804	chr11	64908751	64909930	+	0	NA	exon (NM_001367972, exon 15 of 41)	exon (NM_001367972, exon 15 of 41)	-6885	NR_106807	102466727		NR_106807	ENSG00000274314	MIR6749	hsa-mir-6749	microRNA 6749	ncRNA
21772	chr1	206921501	206922270	+	0	NA	promoter-TSS (NM_001142473)	promoter-TSS (NM_001142473)	56	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
133002	chr2	111570051	111570630	+	0	NA	Intergenic	Intergenic	-75179	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
58166	chr12	124953951	124954250	+	0	NA	exon (NM_032656, exon 19 of 27)	exon (NM_032656, exon 19 of 27)	35031	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
10027	chr1	56645151	56645450	+	0	NA	promoter-TSS (NR_135111)	promoter-TSS (NR_135111)	-14	NM_006252	5563		NM_006252	ENSG00000162409	PRKAA2	AMPK|AMPK2|AMPKa2|PRKAA	protein kinase AMP-activated catalytic subunit alpha 2	protein-coding
212300	chr7	124765751	124766200	+	0	NA	promoter-TSS (NM_005302)	promoter-TSS (NM_005302)	-183	NM_005302	2861		NM_005302	ENSG00000170775	GPR37	EDNRBL|PAELR|hET(B)R-LP	G protein-coupled receptor 37	protein-coding
92415	chr17	8385151	8385250	+	0	NA	Intergenic	Intergenic	-2007	NM_000987	6154		NM_000987	ENSG00000161970	RPL26	DBA11|L26|uL24	ribosomal protein L26	protein-coding
217488	chr8	29028351	29029030	+	0	NA	intron (NM_001324391, intron 6 of 10)	LFSINE_Vert|SINE|tRNA	137376	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
94978	chr17	32267171	32267330	+	0	NA	intron (NM_001363834, intron 1 of 6)	intron (NM_001363834, intron 1 of 6)	1074	NM_001363835	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
200468	chr6	135146451	135146780	+	0	NA	Intergenic	Intergenic	-34693	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
57082	chr12	121024451	121024730	+	0	NA	intron (NM_198213, intron 3 of 4)	AluSz|SINE|Alu	-8103	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
132835	chr2	110675051	110676280	+	0	NA	intron (NM_004336, intron 1 of 24)	AluJr4|SINE|Alu	2398	NM_004336	699		NM_004336	ENSG00000169679	BUB1	BUB1A|BUB1L|MCPH30|hBUB1	BUB1 mitotic checkpoint serine/threonine kinase	protein-coding
101866	chr17	74215221	74216050	+	0	NA	promoter-TSS (NM_001330453)	promoter-TSS (NM_001330453)	5	NM_001330453	94015		NM_032646	ENSG00000141540	TTYH2	C17orf29	tweety family member 2	protein-coding
35220	chr11	823451	823550	+	0	NA	intron (NM_020376, intron 5 of 9)	intron (NM_020376, intron 5 of 9)	-4419	NM_001286606	283229		NM_173584	ENSG00000177685	CRACR2B	EFCAB4A	calcium release activated channel regulator 2B	protein-coding
233659	chrX	1014821	1015080	+	0	NA	Intergenic	AluJb|SINE|Alu	197699	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
103657	chr17	78774271	78775600	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	7273	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
43132	chr11	75270971	75271530	+	0	NA	intron (NM_020251, intron 12 of 14)	intron (NM_020251, intron 12 of 14)	30476	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
71357	chr14	105476651	105476950	+	0	NA	promoter-TSS (NR_073085)	promoter-TSS (NR_073085)	-443	NR_073085	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
156705	chr22	41696651	41698050	+	0	NA	non-coding (NR_160905, exon 4 of 4)	non-coding (NR_160905, exon 4 of 4)	-2153	NM_152513	150365		NM_152513	ENSG00000167077	MEI1	HYDM3|SPATA38	meiotic double-stranded break formation protein 1	protein-coding
54403	chr12	89992801	89993400	+	0	NA	Intergenic	Intergenic	45407	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
76585	chr15	75348801	75349180	+	0	NA	exon (NM_001352520, exon 2 of 11)	exon (NM_001352520, exon 2 of 11)	1155	NR_046311	79661		NM_024608	ENSG00000140398	NEIL1	FPG1|NEI1|hFPG1	nei like DNA glycosylase 1	protein-coding
118367	chr19	35710601	35711680	+	0	NA	intron (NM_014383, intron 1 of 6)	intron (NM_014383, intron 1 of 6)	6582	NM_014383	27033		NM_014383	ENSG00000011590	ZBTB32	FAXF|FAZF|Rog|TZFP|ZNF538|mynn	zinc finger and BTB domain containing 32	protein-coding
75410	chr15	65768751	65768850	+	0	NA	intron (NM_001376919, intron 1 of 31)	AluSq2|SINE|Alu	23493	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
148842	chr21	8405211	8406280	+	0	NA	intron (NR_038958, intron 2 of 6).2	AluSz6|SINE|Alu	8819	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
868	chr1	1623701	1624400	+	0	NA	intron (NM_080875, intron 4 of 19)	intron (NM_080875, intron 4 of 19)	-8123	NM_006983	8510		NM_006983	ENSG00000189409	MMP23B	MIFR|MIFR-1|MMP22|MMP23A	matrix metallopeptidase 23B	protein-coding
60645	chr13	42406421	42407100	+	0	NA	Intergenic	Intergenic	-18132	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
205435	chr7	16931051	16931350	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-49217	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
88810	chr16	87402251	87402750	+	0	NA	intron (NM_022818, intron 3 of 3)	intron (NM_022818, intron 3 of 3)	10164	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
204033	chr7	1932301	1932700	+	0	NA	intron (NM_001304524, intron 15 of 16)	HAL1|LINE|L1	8071	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
103907	chr17	79812851	79813890	+	0	NA	Intergenic	CpG	-10082	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
233909	chrX	1620721	1621780	+	0	NA	intron (NM_001171039, intron 1 of 6).2	intron (NM_001171039, intron 1 of 6).2	6117	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
213028	chr7	131033071	131033800	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	73595	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
4955	chr1	23977351	23978100	+	0	NA	intron (NM_001191007, intron 2 of 5)	intron (NM_001191007, intron 2 of 5)	2602	NM_001191009	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
130765	chr2	86825281	86827480	+	0	NA	intron (NM_172101, intron 5 of 6)	intron (NM_172101, intron 5 of 6)	-17984	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
189189	chr5	171418371	171419100	+	0	NA	promoter-TSS (NM_003862)	promoter-TSS (NM_003862)	-912	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
14927	chr1	147544671	147545880	+	0	NA	intron (NM_004326, intron 1 of 9)	intron (NM_004326, intron 1 of 9)	3774	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
194802	chr6	34237901	34239200	+	0	NA	promoter-TSS (NM_145905)	promoter-TSS (NM_145905)	-241	NM_145905	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
125942	chr2	25196151	25196740	+	0	NA	Intergenic	Intergenic	-7868	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
90078	chr16	90014571	90014930	+	0	NA	intron (NM_001288708, intron 1 of 4)	AluSz6|SINE|Alu	-4629	NM_024043	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
94741	chr17	30795371	30795530	+	0	NA	intron (NM_015986, intron 4 of 7)	AluSp|SINE|Alu	29242	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
219718	chr8	81008621	81008880	+	0	NA	intron (NM_018440, intron 3 of 8)	L4_C_Mam|LINE|RTE-X	103318	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
55697	chr12	107749321	107749580	+	0	NA	intron (NM_012406, intron 5 of 11)	FLAM_C|SINE|Alu	11687	NM_012406	11108		NM_012406	ENSG00000110851	PRDM4	PFM1	PR/SET domain 4	protein-coding
91776	chr17	6996771	6996930	+	0	NA	exon (NM_000697, exon 2 of 14)	exon (NM_000697, exon 2 of 14)	801	NM_000697	239		NM_000697	ENSG00000108839	ALOX12	12-LOX|12S-LOX|LOG12	arachidonate 12-lipoxygenase, 12S type	protein-coding
42649	chr11	72433701	72435450	+	0	NA	promoter-TSS (NM_001258392)	promoter-TSS (NM_001258392)	-44	NM_001258392	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
62758	chr13	108155421	108155730	+	0	NA	Intergenic	Intergenic	59207	NM_002312	3981		NM_002312	ENSG00000174405	LIG4	LIG4S	DNA ligase 4	protein-coding
65696	chr14	52739701	52740100	+	0	NA	intron (NM_001130701, intron 2 of 11)	AluJo|SINE|Alu	9734	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
80561	chr16	2841801	2842080	+	0	NA	non-coding (NR_026864, exon 1 of 2)	non-coding (NR_026864, exon 1 of 2)	811	NR_026864	124221		NM_178453	ENSG00000291300	PRSS30P	Disp|TMPRSS8|TMPRSS8P	serine protease 30, pseudogene	pseudo
56575	chr12	117157851	117158550	+	0	NA	intron (NM_033624, intron 9 of 11)	intron (NM_033624, intron 9 of 11)	32270	NM_015002	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
165675	chr3	101865871	101866030	+	0	NA	Intergenic	Intergenic	16436	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
83630	chr16	28279051	28279830	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-13085	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
212539	chr7	128853871	128854530	+	0	NA	exon (NM_001127487, exon 39 of 47)	exon (NM_001127487, exon 39 of 47)	8426	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
48247	chr12	8395321	8395580	+	0	NA	Intergenic	AluJb|SINE|Alu	-4698	NR_024420	389634		NM_001012988	ENSG00000226091	LINC00937	-	long intergenic non-protein coding RNA 937	ncRNA
92388	chr17	8284121	8284830	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-4195	NM_001177802	29098		NM_016492	ENSG00000108961	RANGRF	HSPC165|HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
63065	chr13	113153401	113155130	+	0	NA	Intergenic	CpG	-4383	NM_003891	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
139891	chr2	230700601	230700800	+	0	NA	promoter-TSS (NR_040038)	promoter-TSS (NR_040038)	-171	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
192812	chr6	26661171	26661330	+	0	NA	Intergenic	AluSp|SINE|Alu	-1498	NM_001242797	79692		NM_024639	ENSG00000181315	ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
170967	chr3	194489571	194490330	+	0	NA	Intergenic	Intergenic	2810	NR_033929	401106		NR_033929		ATP13A3-DT	LINC00884	ATP13A3 divergent transcript	ncRNA
92512	chr17	8894771	8895550	+	0	NA	intron (NM_001142633, intron 5 of 18)	intron (NM_001142633, intron 5 of 18)	17357	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
173139	chr4	6655951	6656300	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	16034	NM_001272053	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
60144	chr13	39777501	39778230	+	0	NA	intron (NM_001145079, intron 18 of 18)	intron (NM_001145079, intron 18 of 18)	-113730	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
91116	chr17	3684371	3684530	+	0	NA	intron (NM_002561, intron 9 of 11)	AluJr|SINE|Alu	11705	NM_001204519	5026		NM_002561	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X 5	protein-coding
31429	chr10	95761921	95762330	+	0	NA	intron (NR_038444, intron 5 of 5)	intron (NR_038444, intron 5 of 5)	5962	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
35421	chr11	1429521	1429950	+	0	NA	intron (NM_001256630, intron 1 of 19)	intron (NM_001256630, intron 1 of 19)	18583	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
85036	chr16	31712801	31713890	+	0	NA	5' UTR (NM_001130913, exon 1 of 5)	5' UTR (NM_001130913, exon 1 of 5)	116	NM_001130913	124411		NM_001004300	ENSG00000197302	KRBOX5	ZNF720	KRAB box domain containing 5	protein-coding
71219	chr14	105158171	105158730	+	0	NA	intron (NM_002226, intron 2 of 25)	intron (NM_002226, intron 2 of 25)	-7586	NR_106823	102465458		NR_106823	ENSG00000273778	MIR6765	hsa-mir-6765	microRNA 6765	ncRNA
75211	chr15	64838971	64839130	+	0	NA	Intergenic	Intergenic	-2833	NM_001195059	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
133228	chr2	113196271	113197030	+	0	NA	intron (NM_012455, intron 12 of 16)	intron (NM_012455, intron 12 of 16)	22679	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
132381	chr2	105772471	105773400	+	0	NA	intron (NM_001004722, intron 1 of 3)	AluJr|SINE|Alu	27872	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
103582	chr17	78700571	78700730	+	0	NA	intron (NM_017456, intron 6 of 12)	AluSz|SINE|Alu	16382	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
63090	chr13	113214921	113215180	+	0	NA	intron (NM_003589, intron 2 of 19)	intron (NM_003589, intron 2 of 19)	5437	NM_001008895	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
34161	chr10	128072901	128073100	+	0	NA	intron (NM_001323354, intron 15 of 19)	intron (NM_001323354, intron 15 of 19)	-10575	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
228930	chr9	113228151	113228600	+	0	NA	intron (NM_001859, intron 1 of 4)	intron (NM_001859, intron 1 of 4)	6831	NM_001859	1317		NM_001859	ENSG00000136868	SLC31A1	COPT1|CTR1|NSCT	solute carrier family 31 member 1	protein-coding
215596	chr7	158976521	158977400	+	0	NA	Intergenic	MER52C|LTR|ERV1	-31394	NR_024394	154822		NM_198345	ENSG00000231419	LINC00689	STORM	long intergenic non-protein coding RNA 689	ncRNA
236668	chrX	76318601	76318800	+	0	NA	Intergenic	L1PB1|LINE|L1	-109010	NM_020932	57692		NM_020932	ENSG00000198934	MAGEE1	DAMAGE|HCA1	MAGE family member E1	protein-coding
157973	chr22	49822721	49822980	+	0	NA	intron (NR_146335, intron 1 of 13)	intron (NR_146335, intron 1 of 13)	1481	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
188489	chr5	154783951	154784650	+	0	NA	intron (NM_001367719, intron 1 of 18)	L2b|LINE|L2	27146	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
76482	chr15	74888321	74888580	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-1592	NM_001289156	4351		NM_002435	ENSG00000178802	MPI	CDG1B|PMI|PMI1	mannose phosphate isomerase	protein-coding
39104	chr11	48051521	48051830	+	0	NA	intron (NM_002843, intron 1 of 24)	MIR|SINE|MIR	-45107	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
229220	chr9	114900701	114901580	+	0	NA	TTS (NM_001244)	TTS (NM_001244)	29451	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
68167	chr14	75906421	75906900	+	0	NA	intron (NM_015072, intron 31 of 31)	intron (NM_015072, intron 31 of 31)	75335	NM_003239	7043		NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
80292	chr16	2256471	2256830	+	0	NA	intron (NM_080594, intron 6 of 7)	intron (NM_080594, intron 6 of 7)	-5063	NM_001919	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
8485	chr1	40816751	40816850	+	0	NA	intron (NM_172163, intron 1 of 12)	intron (NM_172163, intron 1 of 12)	33013	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
214310	chr7	149237171	149237330	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	-2401	NM_012256	7988		NM_012256	ENSG00000170260	ZNF212	C2H2-150|ZNF182|ZNFC150	zinc finger protein 212	protein-coding
54136	chr12	76540371	76540530	+	0	NA	intron (NM_001319652, intron 1 of 25)	intron (NM_001319652, intron 1 of 25)	19321	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
59827	chr13	30424021	30424480	+	0	NA	intron (NM_001355247, intron 1 of 3)	intron (NM_001355247, intron 1 of 3)	1757	NM_001355247	171222		NM_001355247	ENSG00000236444	UBE2L5	UBCH7N2|UBE2L5P	ubiquitin conjugating enzyme E2 L5	protein-coding
25085	chr10	3867401	3868250	+	0	NA	Intergenic	Intergenic	33875	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
88940	chr16	87836151	87836630	+	0	NA	intron (NM_003486, intron 8 of 9)	intron (NM_003486, intron 8 of 9)	-1730	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
181419	chr5	40757821	40758230	+	0	NA	Intergenic	L1ME3A|LINE|L1	-2064	NM_012382	23548		NM_012382	ENSG00000113638	TTC33	OSRF	tetratricopeptide repeat domain 33	protein-coding
166076	chr3	108860701	108860900	+	0	NA	Intergenic	AluSg|SINE|Alu	38014	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
21112	chr1	203609251	203609550	+	0	NA	Intergenic	Intergenic	-17387	NM_001001396	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
179326	chr4	182448451	182449480	+	0	NA	intron (NM_001080477, intron 3 of 27)	CpG	205563	NM_001080477	55714		NM_001080477	ENSG00000218336	TENM3	MCOPCB9|MCOPS15|ODZ3|TEN3|TNM3|Ten-m3|ten-3	teneurin transmembrane protein 3	protein-coding
138364	chr2	203946521	203947530	+	0	NA	intron (NM_012092, intron 1 of 4)	intron (NM_012092, intron 1 of 4)	10262	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123564	chr19	54439351	54439650	+	0	NA	Intergenic	Intergenic	9538	NR_126418	104355426		NR_126418	ENSG00000226696	LENG8-AS1	-	LENG8 antisense RNA 1	ncRNA
213202	chr7	132654171	132654530	+	0	NA	intron (NR_046323, intron 1 of 4)	intron (NR_046323, intron 1 of 4)	5556	NR_046323	286023		NM_173682	ENSG00000183470	FLJ40288	-	Putative uncharacterized protein FLJ40288	ncRNA
22516	chr1	221824251	221824550	+	0	NA	Intergenic	Intergenic	16266	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
201363	chr6	144689821	144690480	+	0	NA	intron (NM_001375323, intron 2 of 24)	L1PBa|LINE|L1	107002	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
33618	chr10	119596401	119597830	+	0	NA	promoter-TSS (NM_001323968)	promoter-TSS (NM_001323968)	-86	NM_003252	7073		NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
34868	chr11	353901	354700	+	0	NA	Intergenic	AluY|SINE|Alu	-15199	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
77072	chr15	78898021	78898830	+	0	NA	TTS (NM_006791)	TTS (NM_006791)	25436	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
81743	chr16	11360071	11360230	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	14691	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
230036	chr9	127311251	127311530	+	0	NA	intron (NR_104591, intron 2 of 26)	intron (NR_104591, intron 2 of 26)	46616	NM_032293	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
93347	chr17	18220951	18222450	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-3935	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
40264	chr11	63769001	63770000	+	0	NA	promoter-TSS (NM_001144936)	promoter-TSS (NM_001144936)	-725	NM_001144936	65998		NM_023941	ENSG00000188070	ZFTA	C11orf95	zinc finger translocation associated	protein-coding
7447	chr1	33036121	33037380	+	0	NA	exon (NM_013411, exon 1 of 7)	exon (NM_013411, exon 1 of 7)	133	NM_001625	204		NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
136190	chr2	174552451	174553180	+	0	NA	Intergenic	L1MB2|LINE|L1	5257	NR_004394	26827		NR_004394	ENSG00000206625	RNU6-1	RNU6|RNU6A|U6|U6-1	RNA, U6 small nuclear 1	snRNA
114334	chr19	12139721	12140700	+	0	NA	non-coding (NR_037802, exon 5 of 8)	non-coding (NR_037802, exon 5 of 8)	140	NM_001203250	7568		NM_021143	ENSG00000132010	ZNF20	KOX13	zinc finger protein 20	protein-coding
221528	chr8	124661651	124662150	+	0	NA	intron (NM_001363300, intron 3 of 12)	L2c|LINE|L2	66573	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
148690	chr21	6283971	6284230	+	0	NA	Intergenic	Intergenic	-16764	NM_001322036	102724951		NM_001322036	ENSG00000276077	LINC03105	-	long intergenic non-protein coding RNA 3105	ncRNA
190348	chr5	179680301	179681730	+	0	NA	promoter-TSS (NM_001164444)	promoter-TSS (NM_001164444)	19	NM_001164444	646019		NM_001164444	ENSG00000204659	CBY3	-	chibby family member 3	protein-coding
236696	chrX	77779971	77780680	+	0	NA	intron (NM_138270, intron 1 of 33)	AluSg7|SINE|Alu	5891	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
215568	chr7	158818271	158819130	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	10809	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
67100	chr14	68293321	68293780	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	335237	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
111681	chr19	4263671	4264230	+	0	NA	intron (NM_018074, intron 6 of 7)	intron (NM_018074, intron 6 of 7)	-15119	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
12240	chr1	100429001	100429200	+	0	NA	intron (NM_001319210, intron 5 of 16)	AluSz|SINE|Alu	76594	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
114001	chr19	10855951	10856650	+	0	NA	exon (NM_001136482, exon 3 of 7)	exon (NM_001136482, exon 3 of 7)	7885	NM_001136482	255809		NM_001136482	ENSG00000214212	C19orf38	HIDE1	chromosome 19 open reading frame 38	protein-coding
128914	chr2	64283401	64284050	+	0	NA	Intergenic	L2|LINE|L2	55324	NR_120420	100507006		NR_120420		LOC100507006	-	uncharacterized LOC100507006	ncRNA
167557	chr3	129384571	129385150	+	0	NA	intron (NR_003111, intron 3 of 3)	intron (NR_003111, intron 3 of 3)	12488	NR_002992	677797		NR_002992	ENSG00000207088	SNORA7B	ACA7B	small nucleolar RNA, H/ACA box 7B	snoRNA
124054	chr19	55585571	55586300	+	0	NA	Intergenic	Intergenic	-5087	NM_152600	163033		NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding
204500	chr7	4772501	4772900	+	0	NA	Intergenic	Intergenic	-2923	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
196453	chr6	43509201	43509400	+	0	NA	intron (NM_001271882, intron 1 of 5)	intron (NM_001271882, intron 1 of 5)	1043	NM_001012974	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
53312	chr12	64596301	64596500	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-14095	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
15363	chr1	150092421	150092880	+	0	NA	intron (NR_103998, intron 10 of 13)	intron (NR_103998, intron 10 of 13)	24874	NR_103998	11311		NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
390	chr1	1049621	1050600	+	0	NA	intron (NM_198576, intron 27 of 35)	intron (NM_198576, intron 27 of 35)	-9624	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
8151	chr1	39406701	39406900	+	0	NA	intron (NM_012090, intron 52 of 92)	intron (NM_012090, intron 52 of 92)	-2273	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
67468	chr14	70886001	70887180	+	0	NA	Intergenic	Intergenic	-20869	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
53588	chr12	67900321	67900830	+	0	NA	Intergenic	L1PA2|LINE|L1	-28660	NR_120456	101927922		NR_120456	ENSG00000255772	LINC01479	HRAT39	long intergenic non-protein coding RNA 1479	ncRNA
17043	chr1	156081501	156083530	+	0	NA	promoter-TSS (NM_001093725)	promoter-TSS (NM_001093725)	-50	NM_001093725	92312		NM_001093725	ENSG00000254726	MEX3A	MEX-3A|RKHD4|RNF162	mex-3 RNA binding family member A	protein-coding
72107	chr15	28939671	28939830	+	0	NA	intron (NM_001353793, intron 1 of 12).2	MER119|DNA|hAT-Charlie	5746	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
189265	chr5	172059451	172060150	+	0	NA	intron (NM_005990, intron 14 of 18)	LTR55|LTR|ERVL?	-53162	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
95623	chr17	37644351	37644450	+	0	NA	promoter-TSS (NM_007010).2	promoter-TSS (NM_007010).2	-954	NM_007010	11056		NM_007010	ENSG00000278053	DDX52	HUSSY19|ROK1	DExD-box helicase 52	protein-coding
98606	chr17	47750551	47751230	+	0	NA	Intergenic	AluJr|SINE|Alu	17654	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
159035	chr3	11236601	11236900	+	0	NA	intron (NM_001098211, intron 1 of 1)	intron (NM_001098211, intron 1 of 1)	10769	NM_001098211	3269		NM_000861	ENSG00000196639	HRH1	H1-R|H1R|HH1R|hisH1	histamine receptor H1	protein-coding
41802	chr11	66868711	66869580	+	0	NA	intron (NM_022172, intron 7 of 20)	intron (NM_022172, intron 7 of 20)	12081	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
232211	chr9	134360021	134360580	+	0	NA	intron (NM_002957, intron 1 of 9)	CpG	-18995	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
20774	chr1	201015451	201016000	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	7989	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
175451	chr4	71270871	71271100	+	0	NA	intron (NM_001134742, intron 3 of 24)	intron (NM_001134742, intron 3 of 24)	-68035	NM_003759	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
145814	chr20	45450251	45450600	+	0	NA	Intergenic	MIR|SINE|MIR	-19328	NM_006103	10406		NM_006103	ENSG00000101443	WFDC2	EDDM4|HE4|WAP5|dJ461P17.6	WAP four-disulfide core domain 2	protein-coding
142483	chr20	4664821	4665080	+	0	NA	Intergenic	LTR1C3|LTR|ERV1	-21506	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
16536	chr1	154949501	154950030	+	0	NA	intron (NM_001317734, intron 4 of 9)	intron (NM_001317734, intron 4 of 9)	6334	NM_020524	57326		NM_020524	ENSG00000163346	PBXIP1	HPIP	PBX homeobox interacting protein 1	protein-coding
131067	chr2	88639971	88640500	+	0	NA	Intergenic	L1MEg|LINE|L1	12406	NR_135540	101928403		NR_135540	ENSG00000234028	EIF2AK3-DT	-	EIF2AK3 divergent transcript	ncRNA
121984	chr19	48504621	48504880	+	0	NA	intron (NM_001080434, intron 6 of 15)	AluSz|SINE|Alu	8439	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
201069	chr6	142686051	142686550	+	0	NA	Intergenic	Intergenic	-48411	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
158691	chr3	5199321	5199730	+	0	NA	intron (NM_014674, intron 2 of 11)	intron (NM_014674, intron 2 of 11)	11818	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
47910	chr12	6762721	6763180	+	0	NA	Intergenic	AluSx|SINE|Alu	-3413	NM_002824	5763		NM_002824	ENSG00000159335	PTMS	ParaT	parathymosin	protein-coding
118611	chr19	36795921	36796200	+	0	NA	Intergenic	AluSp|SINE|Alu	-1490	NR_040027	284408		NR_040027	ENSG00000267254	ZNF790-AS1	-	ZNF790 antisense RNA 1	ncRNA
20615	chr1	198939171	198939330	+	0	NA	Intergenic	Intergenic	-1821	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
156442	chr22	41239401	41240300	+	0	NA	intron (NM_138481, intron 1 of 5)	MIR|SINE|MIR	1081	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
114280	chr19	11594471	11594830	+	0	NA	Intergenic	AluJr|SINE|Alu	-2833	NM_001290084	199692		NM_145295	ENSG00000198551	ZNF627	-	zinc finger protein 627	protein-coding
137706	chr2	197502251	197503150	+	0	NA	intron (NM_001202485, intron 2 of 8)	intron (NM_001202485, intron 2 of 8)	2321	NM_001202485	100529241		NM_001202485	ENSG00000270757	HSPE1-MOB4	HSPE1-PHOCN	HSPE1-MOB4 readthrough	protein-coding
52547	chr12	56136971	56137350	+	0	NA	intron (NM_015292, intron 16 of 30)	intron (NM_015292, intron 16 of 30)	8893	NM_015292	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
123105	chr19	51593851	51595150	+	0	NA	promoter-TSS (NR_034159)	promoter-TSS (NR_034159)	-120	NR_034159	729975		NR_034159		LINC01530	-	long intergenic non-protein coding RNA 1530	ncRNA
125846	chr2	24421401	24421980	+	0	NA	Intergenic	L1M7|LINE|L1	-61154	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
210535	chr7	100237451	100237750	+	0	NA	intron (NR_166147, intron 1 of 4)	intron (NR_166147, intron 1 of 4)	18352	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
194906	chr6	34752521	34753000	+	0	NA	Intergenic	Intergenic	-4334	NR_029472	6631		NM_003093	ENSG00000124562	SNRPC	U1C|Yhc1	small nuclear ribonucleoprotein polypeptide C	protein-coding
222553	chr8	140605571	140605730	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	29983	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
231264	chr9	130003471	130004280	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluY|SINE|Alu	39314	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
36784	chr11	9458851	9458950	+	0	NA	TTS (NR_036539)	TTS (NR_036539)	1798	NR_036539	644656		NR_036539	ENSG00000268403	LOC644656	-	uncharacterized LOC644656	ncRNA
108263	chr18	63253251	63253550	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	66369	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
29650	chr10	71875701	71875900	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-24549	NM_001042466	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
234493	chrX	18890101	18890300	+	0	NA	promoter-TSS (NR_029379)	promoter-TSS (NR_029379)	-96	NR_029379	100132163		NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	ncRNA
28602	chr10	56358821	56359650	+	0	NA	intron (NM_032997, intron 5 of 7)	MIR|SINE|MIR	2024	NM_007057	11130		NM_007057	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|SIP30|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
101962	chr17	74677751	74678180	+	0	NA	intron (NM_175738, intron 1 of 8)	intron (NM_175738, intron 1 of 8)	6834	NM_175738	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
235095	chrX	40299471	40300350	+	0	NA	Intergenic	MIR|SINE|MIR	36993	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
223737	chr8	144500351	144502300	+	0	NA	intron (NM_032902, intron 12 of 12)	intron (NM_032902, intron 12 of 12)	-1743	NM_001382665	2875		NM_005309	ENSG00000167701	GPT	AAT1|ALT|ALT1|GPT1|SGPT	glutamic--pyruvic transaminase	protein-coding
14175	chr1	121415071	121415230	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-17245	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
87217	chr16	69471151	69471580	+	0	NA	Intergenic	L1MC3|LINE|L1	46746	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
203048	chr6	166005901	166006300	+	0	NA	Intergenic	Intergenic	-18061	NR_026860	90632		NR_026860	ENSG00000112541	LINC00473	C6orf176|LNC473|bA142J11.1	long intergenic non-protein coding RNA 473	ncRNA
236940	chrX	100615151	100615250	+	0	NA	Intergenic	L1PA11|LINE|L1	21606	NM_001278740	7105		NM_003270	ENSG00000000003	TSPAN6	T245|TM4SF6|TSPAN-6	tetraspanin 6	protein-coding
198178	chr6	96260551	96260650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	244626	NM_006581	10690		NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding
194656	chr6	33623051	33624530	+	0	NA	intron (NM_002224, intron 1 of 57)	intron (NM_002224, intron 1 of 57)	2468	NM_002224	3710		NM_002224	ENSG00000096433	ITPR3	CMT1J|IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding
148946	chr21	10271771	10271930	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-141647	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
224257	chr9	5976851	5977350	+	0	NA	intron (NM_001017969, intron 2 of 7)	MIR1_Amn|SINE|MIR	-30726	NR_039811	100616288		NR_039811	ENSG00000263575	MIR4665	mir-4665	microRNA 4665	ncRNA
66431	chr14	61527651	61528050	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	42344	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
78711	chr15	98428351	98428730	+	0	NA	Intergenic	CpG	-7542	NR_146567	105371011		NR_146566		LINC02351	-	long intergenic non-protein coding RNA 2351	ncRNA
210652	chr7	100478111	100478600	+	0	NA	intron (NM_030935, intron 1 of 4)	(GT)n|Simple_repeat|Simple_repeat	859	NM_030935	81628		NM_030935	ENSG00000166925	TSC22D4	SPACDR|THG-1|THG1|TILZ2	TSC22 domain family member 4	protein-coding
58181	chr12	124993501	124995080	+	0	NA	intron (NM_080626, intron 1 of 2)	CpG	645	NM_080626	140707		NM_080626	ENSG00000184992	BRI3BP	BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19	BRI3 binding protein	protein-coding
90436	chr17	1358901	1359300	+	0	NA	intron (NR_024058, intron 5 of 6)	AluSx1|SINE|Alu	41122	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
6783	chr1	30763621	30764430	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6251	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
231786	chr9	132320851	132321150	+	0	NA	intron (NM_001351527, intron 10 of 25)	HAL1|LINE|L1	33856	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
227753	chr9	93097921	93099130	+	0	NA	intron (NR_160511, intron 1 of 4)	intron (NR_160511, intron 1 of 4)	2308	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
132506	chr2	106077971	106078530	+	0	NA	TTS (NM_032411)	TTS (NM_032411)	12562	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
209093	chr7	74873951	74874300	+	0	NA	Intergenic	AluSz|SINE|Alu	16487	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
116791	chr19	18518701	18519480	+	0	NA	intron (NM_006532, intron 1 of 11)	AluY|SINE|Alu	2980	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
37032	chr11	12134301	12134600	+	0	NA	intron (NM_001346293, intron 2 of 26)	intron (NM_001346293, intron 2 of 26)	-3940	NM_001282664	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
156711	chr22	41779251	41779550	+	0	NA	intron (NM_152513, intron 22 of 30)	AluJb|SINE|Alu	-21279	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
166049	chr3	108780121	108780700	+	0	NA	Intergenic	Intergenic	-23127	NM_032579	84666		NM_032579	ENSG00000163515	RETNLB	FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2	resistin like beta	protein-coding
226143	chr9	63448121	63448530	+	0	NA	Intergenic	Intergenic	113787	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
134385	chr2	136344371	136345350	+	0	NA	Intergenic	Intergenic	-226711	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
120778	chr19	45436671	45437030	+	0	NA	TTS (NR_106736)	TTS (NR_106736)	196	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
4624	chr1	22108171	22109080	+	0	NA	Intergenic	Intergenic	34472	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
45747	chr11	119151771	119152350	+	0	NA	intron (NM_001142505, intron 2 of 14)	intron (NM_001142505, intron 2 of 14)	2471	NM_001142505	64137		NM_022169	ENSG00000172350	ABCG4	WHITE2	ATP binding cassette subfamily G member 4	protein-coding
200885	chr6	138975251	138975350	+	0	NA	intron (NM_031922, intron 1 of 19)	intron (NM_031922, intron 1 of 19)	12953	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
54909	chr12	96070821	96071080	+	0	NA	Intergenic	Intergenic	-27430	NM_001256643	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
238716	chrX	154135301	154136200	+	0	NA	Intergenic	Intergenic	-8493	NM_020061	5956		NM_020061	ENSG00000102076	OPN1LW	CBBM|CBP|COD5|RCP|ROP	opsin 1, long wave sensitive	protein-coding
217865	chr8	37837151	37838080	+	0	NA	intron (NM_032777, intron 13 of 18)	intron (NM_032777, intron 13 of 18)	12246	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
210902	chr7	101181671	101182000	+	0	NA	Intergenic	AluY|SINE|Alu	-1542	NM_198571	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
58888	chr13	18997101	18997300	+	0	NA	Intergenic	Intergenic	-11059	NR_026852	348021		NR_026852	ENSG00000232685	LINC00442	-	long intergenic non-protein coding RNA 442	ncRNA
146710	chr20	50582851	50582950	+	0	NA	3' UTR (NM_001278618, exon 9 of 9)	3' UTR (NM_001278618, exon 9 of 9)	-2886	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
116460	chr19	18085301	18085500	+	0	NA	intron (NM_153701, intron 1 of 9)	intron (NM_153701, intron 1 of 9)	1534	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
149513	chr21	32726771	32728540	+	0	NA	promoter-TSS (NR_038880)	promoter-TSS (NR_038880)	266	NM_001160306	8867		NM_003895	ENSG00000159082	SYNJ1	DEE53|EIEE53|INPP5G|PARK20	synaptojanin 1	protein-coding
166192	chr3	111715701	111716300	+	0	NA	intron (NM_153268, intron 3 of 3)	intron (NM_153268, intron 3 of 3)	-16496	NM_001134437	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
20432	chr1	198292351	198292450	+	0	NA	intron (NM_133494, intron 7 of 9)	intron (NM_133494, intron 7 of 9)	135402	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
162757	chr3	49060001	49060400	+	0	NA	intron (NM_001320580, intron 3 of 10)	AluSq10|SINE|Alu	-30802	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
19269	chr1	172708451	172709150	+	0	NA	Intergenic	Intergenic	49697	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
6616	chr1	28883901	28884100	+	0	NA	Intergenic	Intergenic	-3091	NM_203342	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
214163	chr7	144800701	144800900	+	0	NA	intron (NR_146934, intron 1 of 6)	L1PA10|LINE|L1	35140	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
35509	chr11	1543351	1544350	+	0	NA	Intergenic	Intergenic	28421	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
31501	chr10	96672551	96672730	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	47874	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
230584	chr9	128562151	128562250	+	0	NA	intron (NM_001375312, intron 2 of 57)	AluSx4|SINE|Alu	9613	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
217601	chr8	29680571	29681230	+	0	NA	Intergenic	L1MC4|LINE|L1	67209	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
173267	chr4	7049121	7049380	+	0	NA	intron (NM_152293, intron 1 of 1)	AluJb|SINE|Alu	-3019	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
227654	chr9	92967651	92967750	+	0	NA	intron (NM_001369951, intron 1 of 17)	AluSc|SINE|Alu	3693	NM_001369951	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
72309	chr15	31214471	31214830	+	0	NA	Intergenic	Intergenic	-1371	NR_135834	102725022		NR_135834		LINC02352	-	long intergenic non-protein coding RNA 2352	ncRNA
208180	chr7	64877271	64878150	+	0	NA	Intergenic	SST1|Satellite|centr	-4803	NM_001385643	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
69763	chr14	99162021	99162480	+	0	NA	Intergenic	AluSz|SINE|Alu	109947	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
172359	chr4	1739501	1739900	+	0	NA	intron (NM_006342, intron 10 of 15)	intron (NM_006342, intron 10 of 15)	18179	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
108686	chr18	77020101	77020500	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-3245	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
198062	chr6	90219731	90220000	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	76978	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
50009	chr12	42332021	42332530	+	0	NA	intron (NM_001364834, intron 1 of 9)	intron (NM_001364834, intron 1 of 9)	477	NM_001364834	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
126993	chr2	36789551	36790050	+	0	NA	intron (NM_053276, intron 12 of 15)	MIR3|SINE|MIR	93093	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
100513	chr17	62065611	62066880	+	0	NA	promoter-TSS (NM_005121)	promoter-TSS (NM_005121)	-967	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
227904	chr9	94118951	94119230	+	0	NA	Intergenic	L1HS|LINE|L1	34626	NM_001253829	138639		NM_152422	ENSG00000158079	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
101616	chr17	68198001	68198470	+	0	NA	promoter-TSS (NR_027283)	promoter-TSS (NR_027283)	-425	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
163533	chr3	51642401	51642680	+	0	NA	intron (NM_001322257, intron 14 of 21)	MER20|DNA|hAT-Charlie	-28635	NM_001129884	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
217951	chr8	38180521	38181080	+	0	NA	intron (NM_001204878, intron 1 of 3)	MER5A1|DNA|hAT-Charlie	3945	NM_004874	9530		NM_004874	ENSG00000156735	BAG4	BAG-4|SODD	BAG cochaperone 4	protein-coding
20254	chr1	193537401	193538150	+	0	NA	Intergenic	L1MB2|LINE|L1	233030	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
110009	chr19	1433451	1433550	+	0	NA	intron (NM_001352034, intron 11 of 11)	intron (NM_001352034, intron 11 of 11)	-4896	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
146567	chr20	50050701	50051100	+	0	NA	Intergenic	Intergenic	-9271	NR_051976	100887755		NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
63320	chr13	114005151	114006350	+	0	NA	intron (NM_001320822, intron 18 of 23).2	intron (NM_001320822, intron 18 of 23).2	-31674	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
124440	chr19	58498271	58498430	+	0	NA	TTS (NM_012254)	TTS (NM_012254)	13642	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
201110	chr6	142859951	142860050	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	85176	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
130928	chr2	87488201	87488900	+	0	NA	intron (NR_146461, intron 2 of 2)	AluSz6|SINE|Alu	18600	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
182973	chr5	71525151	71525980	+	0	NA	intron (NM_018429, intron 25 of 38).3	SVA_D|Retroposon|SVA	-61775	NM_001363147	64087		NM_022132	ENSG00000131844	MCCC2	MCCB|MCCCbeta	methylcrotonyl-CoA carboxylase subunit 2	protein-coding
13082	chr1	111517451	111518180	+	0	NA	intron (NM_001081976, intron 1 of 5)	intron (NM_001081976, intron 1 of 5)	-14182	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
148979	chr21	13985021	13985480	+	0	NA	Intergenic	(TGCCC)n|Simple_repeat|Simple_repeat	-4806	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
234215	chrX	12974601	12975730	+	0	NA	promoter-TSS (NM_021109)	promoter-TSS (NM_021109)	55	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
93149	chr17	17750821	17751300	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	15242	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
172053	chr4	1017471	1018050	+	0	NA	intron (NM_001370296, intron 2 of 6)	intron (NM_001370296, intron 2 of 6)	5296	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
122477	chr19	49552571	49553450	+	0	NA	Intergenic	Intergenic	25007	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
50663	chr12	48823121	48823400	+	0	NA	intron (NM_001206915, intron 1 of 11)	intron (NM_001206915, intron 1 of 11)	4764	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
170355	chr3	184567001	184567500	+	0	NA	intron (NM_004443, intron 1 of 15)	intron (NM_004443, intron 1 of 15)	5465	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
186497	chr5	138283271	138283500	+	0	NA	Intergenic	Intergenic	-8764	NM_001496	2676		NM_001496	ENSG00000146013	GFRA3	GDNFR3	GDNF family receptor alpha 3	protein-coding
73246	chr15	41778521	41778980	+	0	NA	intron (NR_049762, intron 2 of 28)	L3b|LINE|CR1	4266	NR_049762	23005		NM_014994	ENSG00000137802	MAPKBP1	JNKBP-1|JNKBP1|NPHP20	mitogen-activated protein kinase binding protein 1	protein-coding
145081	chr20	38658521	38659230	+	0	NA	Intergenic	Intergenic	57066	NM_001164431	343578		NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
155080	chr22	37559801	37561000	+	0	NA	promoter-TSS (NM_152243)	promoter-TSS (NM_152243)	-80	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
82184	chr16	14936271	14936630	+	0	NA	promoter-TSS (NM_006985)	promoter-TSS (NM_006985)	-993	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
101134	chr17	65038301	65038680	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluJb|SINE|Alu	17284	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
125879	chr2	24608651	24608950	+	0	NA	intron (NM_147233, intron 1 of 20)	L1MD3|LINE|L1	24323	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
110303	chr19	1838971	1839130	+	0	NA	intron (NM_020695, intron 1 of 15)	AluSz|SINE|Alu	9433	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
238133	chrX	136697051	136697450	+	0	NA	intron (NM_004840, intron 9 of 21)	L1M4b|LINE|L1	49092	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
112005	chr19	4976101	4976700	+	0	NA	intron (NM_001370093, intron 1 of 11)	intron (NM_001370093, intron 1 of 11)	7287	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
68369	chr14	77747351	77747900	+	0	NA	intron (NM_001318844, intron 3 of 12)	SVA_B|Retroposon|SVA	-13143	NR_161324	283579		NM_174943	ENSG00000197734	C14orf178	-	chromosome 14 open reading frame 178	ncRNA
145200	chr20	38891551	38891650	+	0	NA	intron (NM_001172735, intron 3 of 9)	AluSx1|SINE|Alu	-34817	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
166343	chr3	112970921	112971180	+	0	NA	intron (NM_138939, intron 1 of 3)	intron (NM_138939, intron 1 of 3)	4053	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
135489	chr2	161708721	161708980	+	0	NA	intron (NM_001178016, intron 2 of 26)	intron (NM_001178016, intron 2 of 26)	84434	NM_001354449	57282		NM_022058	ENSG00000144290	SLC4A10	NBCn2|NCBE	solute carrier family 4 member 10	protein-coding
205487	chr7	17844071	17844230	+	0	NA	intron (NM_015132, intron 12 of 25)	L1M4c|LINE|L1	96344	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
113832	chr19	10621201	10621780	+	0	NA	intron (NM_001145056, intron 1 of 21)	AluJb|SINE|Alu	-4063	NM_001363611	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
30894	chr10	86969551	86969850	+	0	NA	promoter-TSS (NM_133447)	promoter-TSS (NM_133447)	-636	NM_133447	119385		NM_133447	ENSG00000271880	AGAP11	-	ArfGAP with GTPase domain, ankyrin repeat and PH domain 11	ncRNA
139397	chr2	222306021	222306480	+	0	NA	Intergenic	CpG	-7252	NM_000438	5077		NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|PAX-3|WS1|WS3	paired box 3	protein-coding
217739	chr8	30724151	30724750	+	0	NA	intron (NM_001195104, intron 1 of 10)	intron (NM_001195104, intron 1 of 10)	3396	NM_000637	2936		NM_000637	ENSG00000104687	GSR	GR|GSRD|HEL-75|HEL-S-122m	glutathione-disulfide reductase	protein-coding
209399	chr7	76325371	76325730	+	0	NA	Intergenic	AluSx1|SINE|Alu	22877	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
171028	chr3	195129301	195129950	+	0	NA	intron (NM_001308069, intron 3 of 3)	L1MB8|LINE|L1	4955	NR_036089	100422926		NR_036089	ENSG00000265333	MIR3137	-	microRNA 3137	ncRNA
49660	chr12	29102551	29103000	+	0	NA	Intergenic	Intergenic	-46503	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
160458	chr3	30319651	30320000	+	0	NA	Intergenic	Intergenic	-199043	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
62278	chr13	98653271	98653830	+	0	NA	Intergenic	MIRc|SINE|MIR	76295	NR_046542	100874069		NR_046542		STK24-AS1	-	STK24 antisense RNA 1	ncRNA
44298	chr11	102340351	102340650	+	0	NA	Intergenic	L2b|LINE|L2	-6682	NM_001166	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
166227	chr3	112116801	112117000	+	0	NA	exon (NM_001171747, exon 4 of 4)	exon (NM_001171747, exon 4 of 4)	4099	NR_030292	693152		NR_030292	ENSG00000207940	MIR567	MIRN567|hsa-mir-567	microRNA 567	ncRNA
226392	chr9	70400851	70401150	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	13657	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
202889	chr6	159981021	159982400	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	12628	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
132887	chr2	111258271	111258450	+	0	NA	intron (NR_136161, intron 3 of 5)	intron (NR_136161, intron 3 of 5)	62726	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
2793	chr1	10909651	10910400	+	0	NA	Intergenic	Intergenic	56662	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
185364	chr5	127519771	127519930	+	0	NA	intron (NM_001286808, intron 1 of 9)	L2c|LINE|L2	2210	NM_001286808	133619		NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
186836	chr5	139429801	139430450	+	0	NA	intron (NM_152686, intron 2 of 7)	Charlie1b|DNA|hAT-Charlie	9400	NM_152686	202052		NM_152686	ENSG00000170464	DNAJC18	-	DnaJ heat shock protein family (Hsp40) member C18	protein-coding
49695	chr12	30847051	30847530	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	51609	NR_040245	100287314		NR_040245		LINC00941	lncIAPF|lncRNA-MUF	long intergenic non-protein coding RNA 941	ncRNA
186511	chr5	138346301	138346500	+	0	NA	intron (NM_001350194, intron 4 of 4)	AluY|SINE|Alu	-6285	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
3443	chr1	15893171	15893330	+	0	NA	intron (NM_015001, intron 3 of 14)	intron (NM_015001, intron 3 of 14)	-45103	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
43414	chr11	77402101	77402300	+	0	NA	intron (NM_001376280, intron 1 of 16)	intron (NM_001376280, intron 1 of 16)	9771	NM_001376286	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
155201	chr22	37826971	37827330	+	0	NA	Intergenic	Intergenic	3768	NM_003614	8484		NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
198236	chr6	99119471	99119630	+	0	NA	Intergenic	Intergenic	-5059	NR_039672	100616347		NR_039672	ENSG00000265226	MIR548AI	-	microRNA 548ai	ncRNA
120495	chr19	44763271	44763630	+	0	NA	Intergenic	AluSz|SINE|Alu	4793	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
60728	chr13	44274021	44275180	+	0	NA	Intergenic	Intergenic	-78400	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
199926	chr6	127888871	127889230	+	0	NA	intron (NM_001164687, intron 1 of 5).2	MLT1I|LTR|ERVL-MaLR	12031	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
133069	chr2	112424771	112424930	+	0	NA	intron (NM_005054, intron 1 of 22).3	AluJr|SINE|Alu	8764	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
203067	chr6	166272651	166272750	+	0	NA	Intergenic	AluSx1|SINE|Alu	35692	NM_175922	285800		NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
61026	chr13	48183201	48183600	+	0	NA	Intergenic	HSMAR2|DNA|TcMar-Mariner	-49806	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
228637	chr9	106187151	106187250	+	0	NA	Intergenic	L1PA2|LINE|L1	-413728	NR_107048	102465995		NR_107048	ENSG00000277889	MIR8081	hsa-mir-8081	microRNA 8081	ncRNA
141123	chr2	238970451	238970880	+	0	NA	Intergenic	Intergenic	-44396	NR_034162	401039		NM_001001698	ENSG00000227744	LINC01940	-	long intergenic non-protein coding RNA 1940	ncRNA
72601	chr15	35751671	35751830	+	0	NA	intron (NR_038251, intron 2 of 2)	intron (NR_038251, intron 2 of 2)	-175106	NR_039735	100616293		NR_039735	ENSG00000265098	MIR4510	mir-4510	microRNA 4510	ncRNA
206624	chr7	35858651	35858750	+	0	NA	intron (NM_001788, intron 2 of 12)	AluSq2|SINE|Alu	57481	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
149132	chr21	17730801	17731030	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	61594	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
123913	chr19	55350871	55351300	+	0	NA	intron (NM_144613, intron 4 of 4)	FordPrefect_a|DNA|hAT-Tip100	3634	NM_144613	125965		NM_144613	ENSG00000160471	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit 6B2	protein-coding
39322	chr11	59106551	59107430	+	0	NA	promoter-TSS (NM_198947)	promoter-TSS (NM_198947)	-195	NM_001142704	374393		NM_198947	ENSG00000189057	FAM111B	CANP|POIKTMP	FAM111 trypsin like peptidase B	protein-coding
81784	chr16	11528801	11529000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1653	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
99221	chr17	49578051	49578150	+	0	NA	intron (NM_007225, intron 1 of 1)	intron (NM_007225, intron 1 of 1)	2229	NM_007225	11248		NM_007225	ENSG00000182575	NXPH3	NPH3	neurexophilin 3	protein-coding
56603	chr12	118059771	118059930	+	0	NA	intron (NM_001278557, intron 1 of 8)	intron (NM_001278557, intron 1 of 8)	1329	NM_018639	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
123282	chr19	53542701	53543530	+	0	NA	intron (NM_001317113, intron 2 of 4)	intron (NM_001317113, intron 2 of 4)	4327	NM_001253800	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
108328	chr18	63949051	63949680	+	0	NA	promoter-TSS (NM_001123366)	promoter-TSS (NM_001123366)	64	NM_001123366	284293		NM_001123366	ENSG00000221887	HMSD	ACC-6|ACC6|C18orf53|HSMD-v	histocompatibility minor serpin domain containing	protein-coding
206723	chr7	36572771	36572930	+	0	NA	intron (NM_001177506, intron 13 of 21)	intron (NM_001177506, intron 13 of 21)	27270	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
142158	chr20	2822101	2822830	+	0	NA	Intergenic	Intergenic	6101	NM_001167670	100288797		NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
209520	chr7	77004701	77005100	+	0	NA	intron (NR_023383, intron 5 of 10)	intron (NR_023383, intron 5 of 10)	24078	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
197816	chr6	87730551	87730850	+	0	NA	Intergenic	Intergenic	-28467	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
119021	chr19	38911321	38912450	+	0	NA	intron (NM_001243212, intron 1 of 4)	intron (NM_001243212, intron 1 of 4)	273	NM_001243212	643669		NM_001243212	ENSG00000262484	CCER2	-	coiled-coil glutamate rich protein 2	protein-coding
131048	chr2	88307801	88308030	+	0	NA	Intergenic	MIR3|SINE|MIR	137569	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
194869	chr6	34575201	34575600	+	0	NA	Intergenic	L2b|LINE|L2	-19067	NM_001252294	25803		NM_012391	ENSG00000124664	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding
179293	chr4	177317401	177317700	+	0	NA	intron (NM_018248, intron 1 of 9)	intron (NM_018248, intron 1 of 9)	7676	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
197531	chr6	77466671	77467000	+	0	NA	Intergenic	Intergenic	-3344	NM_000863	3351		NM_000863	ENSG00000135312	HTR1B	5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine receptor 1B	protein-coding
153791	chr22	29600251	29600750	+	0	NA	Intergenic	AluSz|SINE|Alu	-3056	NM_016418	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
216258	chr8	12432621	12433050	+	0	NA	intron (NR_148876, intron 2 of 5).2	intron (NR_148876, intron 2 of 5).2	3463	NR_148878	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
113711	chr19	10435351	10435830	+	0	NA	intron (NM_001111309, intron 1 of 14)	(AC)n|Simple_repeat|Simple_repeat	3155	NM_001111309	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
41961	chr11	67345421	67346480	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	7596	NM_021173	57804		NM_021173	ENSG00000175482	POLD4	POLDS|p12	DNA polymerase delta 4, accessory subunit	protein-coding
178101	chr4	140567721	140568130	+	0	NA	exon (NM_021833, exon 2 of 6)	exon (NM_021833, exon 2 of 6)	1036	NM_021833	7350		NM_021833	ENSG00000109424	UCP1	SLC25A7|UCP	uncoupling protein 1	protein-coding
170660	chr3	187319721	187320350	+	0	NA	Intergenic	Intergenic	-28298	NR_033519	5648		NM_001879	ENSG00000127241	MASP1	3MC1|CRARF|CRARF1|MAP-1|MAP1|MASP|MASP-3|MASP3|MAp44|PRSS5|RaRF	MBL associated serine protease 1	protein-coding
45969	chr11	121456221	121456550	+	0	NA	intron (NM_003105, intron 1 of 47)	L2c|LINE|L2	4071	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
143461	chr20	30815151	30815650	+	0	NA	Intergenic	Intergenic	-411938	NR_045115	140678		NR_045115		MLLT10P1	MLLT10L|bA348I14.3	MLLT10 pseudogene 1	pseudo
210427	chr7	100085771	100085930	+	0	NA	Intergenic	Intergenic	-3119	NM_006833	10980		NM_006833	ENSG00000168090	COPS6	CSN6|MOV34-34KD	COP9 signalosome subunit 6	protein-coding
221739	chr8	127672001	127672200	+	0	NA	Intergenic	L2a|LINE|L2	61867	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
139073	chr2	218862921	218863180	+	0	NA	intron (NM_006522, intron 1 of 3)	intron (NM_006522, intron 1 of 3)	3245	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
181820	chr5	52786601	52787170	+	0	NA	Intergenic	Intergenic	-1031	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
233962	chrX	2633151	2633250	+	0	NA	intron (NR_033380, intron 8 of 8)	L1MB7|LINE|L1	-17853	NR_037842	100359394		NR_037842	ENSG00000230542	LINC00102	NCRNA00102	long intergenic non-protein coding RNA 102	ncRNA
100132	chr17	58387751	58388080	+	0	NA	intron (NM_017763, intron 2 of 9)	intron (NM_017763, intron 2 of 9)	14806	NM_001305545	54894		NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
232354	chr9	135603751	135604230	+	0	NA	Intergenic	Intergenic	-10193	NM_001375657	102723971		NM_001375657	ENSG00000236543	LOC102723971	-	lipocalin 1-like	protein-coding
60183	chr13	40270871	40271030	+	0	NA	Intergenic	Intergenic	-50448	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
47412	chr12	2890051	2891730	+	0	NA	promoter-TSS (NM_003324)	promoter-TSS (NM_003324)	-1	NM_001160408	7289		NM_003324	ENSG00000078246	TULP3	HRCDF|TUBL3	TUB like protein 3	protein-coding
153460	chr22	25388721	25389180	+	0	NA	intron (NM_001135772, intron 1 of 6)	intron (NM_001135772, intron 1 of 6)	16458	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
196188	chr6	42690671	42691230	+	0	NA	intron (NM_001363705, intron 46 of 46)	intron (NM_001363705, intron 46 of 46)	31647	NM_000322	5961		NM_000322	ENSG00000112619	PRPH2	AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2	peripherin 2	protein-coding
103264	chr17	77666571	77667830	+	0	NA	Intergenic	Intergenic	61359	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
143790	chr20	32452371	32452980	+	0	NA	intron (NM_080616, intron 6 of 7)	intron (NM_080616, intron 6 of 7)	30815	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
3651	chr1	16401301	16401600	+	0	NA	intron (NM_001353349, intron 8 of 10)	AluJr|SINE|Alu	34208	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
215547	chr7	158793771	158793930	+	0	NA	intron (NM_020728, intron 3 of 21)	intron (NM_020728, intron 3 of 21)	35659	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
54672	chr12	93390701	93390900	+	0	NA	intron (NM_001301023, intron 1 of 4)	AluJb|SINE|Alu	12222	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
170589	chr3	186883701	186884100	+	0	NA	Intergenic	L1MB8|LINE|L1	-22532	NR_046662	100874095		NR_046662	ENSG00000226482	ADIPOQ-AS1	-	ADIPOQ antisense RNA 1	ncRNA
15873	chr1	151461021	151461380	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1706	NM_001194938	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
187324	chr5	141640151	141641200	+	0	NA	3' UTR (NM_001130029, exon 8 of 8)	3' UTR (NM_001130029, exon 8 of 8)	3678	NM_173828	285613		NM_173828	ENSG00000164620	RELL2	C5orf16	RELT like 2	protein-coding
190367	chr5	179741301	179741500	+	0	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	8578	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
163112	chr3	50119951	50120730	+	0	NA	intron (NR_135301, intron 3 of 3)	intron (NR_135301, intron 3 of 3)	-19352	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
88442	chr16	84841971	84842480	+	0	NA	intron (NM_031476, intron 2 of 14)	intron (NM_031476, intron 2 of 14)	22240	NM_031476	83716		NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2|LGL1	cysteine rich secretory protein LCCL domain containing 2	protein-coding
139379	chr2	221570301	221570550	+	0	NA	intron (NM_004438, intron 1 of 17)	intron (NM_004438, intron 1 of 17)	1879	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
209377	chr7	76303211	76305100	+	0	NA	exon (NM_001540, exon 3 of 3)	exon (NM_001540, exon 3 of 3)	1482	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
156832	chr22	41945021	41945450	+	0	NA	exon (NM_001304371, exon 4 of 4)	exon (NM_001304371, exon 4 of 4)	1519	NM_001304373	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
34378	chr10	132306871	132309280	+	0	NA	promoter-TSS (NM_001318879)	promoter-TSS (NM_001318879)	-125	NM_173575	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
213185	chr7	132471651	132471950	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	104670	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
4401	chr1	21165821	21166080	+	0	NA	intron (NM_001198803, intron 1 of 12)	intron (NM_001198803, intron 1 of 12)	2089	NM_001198803	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
231582	chr9	131527671	131527830	+	0	NA	intron (NR_134666, intron 5 of 7)	AluJr|SINE|Alu	3513	NM_031432	83549		NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
33034	chr10	110813801	110814080	+	0	NA	intron (NM_001134363, intron 9 of 13)	intron (NM_001134363, intron 9 of 13)	56964	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
3914	chr1	17355801	17356230	+	0	NA	exon (NM_012387, exon 12 of 16)	exon (NM_012387, exon 12 of 16)	-16181	NM_207421	353238		NM_207421	ENSG00000276747	PADI6	OZEMA16|PREMBL2|hPADVI	peptidyl arginine deiminase 6	protein-coding
201228	chr6	143568351	143568450	+	0	NA	intron (NR_027113, intron 1 of 2)	intron (NR_027113, intron 1 of 2)	939	NR_027113	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
129642	chr2	70145671	70145830	+	0	NA	Intergenic	AluSx|SINE|Alu	-20434	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
224200	chr9	5454821	5455480	+	0	NA	intron (NR_052005, intron 1 of 7)	intron (NR_052005, intron 1 of 7)	4608	NM_001314029	29126		NM_014143	ENSG00000120217	CD274	B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1|hPD-L1	CD274 molecule	protein-coding
132702	chr2	109001071	109001430	+	0	NA	Intergenic	Intergenic	-12030	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
76980	chr15	78263171	78263630	+	0	NA	promoter-TSS (NM_018602)	promoter-TSS (NM_018602)	-745	NM_018602	55466		NM_018602	ENSG00000140403	DNAJA4	MST104|MSTP104|PRO1472	DnaJ heat shock protein family (Hsp40) member A4	protein-coding
125436	chr2	11998351	11998450	+	0	NA	Intergenic	Intergenic	-8716	NR_110197	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
18853	chr1	167720501	167720700	+	0	NA	Intergenic	AluSx|SINE|Alu	-1382	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
171137	chr3	195548271	195548640	+	0	NA	Intergenic	MER4A|LTR|ERV1	-5130	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
211753	chr7	107195101	107195530	+	0	NA	intron (NM_001244262, intron 8 of 10).2	AluSx|SINE|Alu	26312	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
36743	chr11	9279421	9279880	+	0	NA	Intergenic	Intergenic	-14300	NM_015213	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
238512	chrX	153669071	153669830	+	0	NA	TTS (NM_001039582)	TTS (NM_001039582)	3838	NM_001135740	139728		NM_198452	ENSG00000130822	PNCK	BSTK3|CaMK1b	pregnancy up-regulated nonubiquitous CaM kinase	protein-coding
223312	chr8	143810921	143811600	+	0	NA	exon (NM_015356, exon 10 of 36)	exon (NM_015356, exon 10 of 36)	1782	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
194735	chr6	33858151	33858730	+	0	NA	Intergenic	L1ME1|LINE|L1	38467	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
79613	chr16	1095221	1095630	+	0	NA	intron (NM_207419, intron 2 of 4)	intron (NM_207419, intron 2 of 4)	819	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
91093	chr17	3635801	3637580	+	0	NA	promoter-TSS (NM_001374493)	promoter-TSS (NM_001374493)	-70	NM_001374496	1497		NM_004937	ENSG00000040531	CTNS	CTNS-LSB|PQLC4|SLC66A4	cystinosin, lysosomal cystine transporter	protein-coding
172585	chr4	2476621	2476880	+	0	NA	intron (NM_001185009, intron 2 of 8)	7SLRNA|srpRNA|srpRNA	7297	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
221865	chr8	128314951	128315130	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	164924	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
236647	chrX	75188451	75188630	+	0	NA	intron (NM_001363821, intron 3 of 9)	L1PA5|LINE|L1	32171	NM_001363821	139596		NM_145052	ENSG00000094841	UPRT	FUR1|UPP	uracil phosphoribosyltransferase homolog	protein-coding
75842	chr15	69474851	69475200	+	0	NA	Intergenic	Intergenic	22207	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
106649	chr18	22933001	22934200	+	0	NA	promoter-TSS (NM_203292)	promoter-TSS (NM_203292)	251	NR_039895	100616139		NR_039895	ENSG00000284331	MIR4741	mir-4741	microRNA 4741	ncRNA
174306	chr4	38523971	38524830	+	0	NA	Intergenic	Intergenic	-1220	NR_110951	101928776		NR_110951	ENSG00000249534	LINC01258	-	long intergenic non-protein coding RNA 1258	ncRNA
183591	chr5	80188451	80188800	+	0	NA	intron (NM_001174072, intron 2 of 11)	AluJo|SINE|Alu	67423	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
5668	chr1	26318721	26318930	+	0	NA	promoter-TSS (NM_145345)	promoter-TSS (NM_145345)	-560	NM_145345	91544		NM_145345	ENSG00000158062	UBXN11	COA-1|PP2243|SOC|SOCI|UBXD5	UBX domain protein 11	protein-coding
137935	chr2	201113921	201114480	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1904	NM_001127184	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
193255	chr6	29949801	29950480	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	7608	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
215825	chr8	6429201	6429450	+	0	NA	intron (NR_136159, intron 3 of 6)	intron (NR_136159, intron 3 of 6)	22172	NM_001322045	79648		NM_024596	ENSG00000147316	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
221601	chr8	125512851	125513550	+	0	NA	Intergenic	Intergenic	80991	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
86429	chr16	66881771	66882150	+	0	NA	intron (NM_001329931, intron 1 of 1)	AluJr|SINE|Alu	1445	NM_020786	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
211654	chr7	106264701	106265450	+	0	NA	intron (NM_005746, intron 6 of 10)	intron (NM_005746, intron 6 of 10)	19908	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
21248	chr1	204362951	204364000	+	0	NA	Intergenic	Intergenic	-3546	NM_014935	22874		NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
40497	chr11	64263371	64263630	+	0	NA	exon (NM_001184883, exon 18 of 29)	exon (NM_001184883, exon 18 of 29)	-7031	NM_001378076	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
56069	chr12	110582351	110584150	+	0	NA	promoter-TSS (NR_138550)	promoter-TSS (NR_138550)	68	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
122499	chr19	49578921	49579180	+	0	NA	intron (NM_001363649, intron 1 of 9)	L1MC5a|LINE|L1	1506	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
16474	chr1	154627071	154628650	+	0	NA	5' UTR (NM_001025107, exon 1 of 15)	5' UTR (NM_001025107, exon 1 of 15)	111	NM_001025107	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
59628	chr13	28027821	28028080	+	0	NA	intron (NM_004119, intron 16 of 23)	intron (NM_004119, intron 16 of 23)	-39257	NM_001105577	646625		NM_001105577	ENSG00000183463	URAD	PRHOXNB	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase	protein-coding
212728	chr7	129843971	129844330	+	0	NA	intron (NM_182697, intron 3 of 4)	intron (NM_182697, intron 3 of 4)	-69136	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
224081	chr9	4315601	4315880	+	0	NA	Intergenic	Intergenic	-15672	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
148997	chr21	14454221	14454730	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-71329	NM_006948	6782		NM_006948	ENSG00000155304	HSPA13	STCH	heat shock protein family A (Hsp70) member 13	protein-coding
4091	chr1	19202471	19203230	+	0	NA	intron (NM_020765, intron 1 of 105)	AluSg7|SINE|Alu	7416	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
133363	chr2	117803701	117804350	+	0	NA	Intergenic	L1PA3|LINE|L1	-10666	NM_006773	8886		NM_006773	ENSG00000088205	DDX18	Has1|MrDb	DEAD-box helicase 18	protein-coding
186479	chr5	138068651	138069080	+	0	NA	Intergenic	Intergenic	-15027	NM_058244	7478		NM_031933	ENSG00000061492	WNT8A	WNT8D	Wnt family member 8A	protein-coding
128563	chr2	60892001	60892200	+	0	NA	intron (NM_001291746, intron 2 of 9)	intron (NM_001291746, intron 2 of 9)	10526	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
161016	chr3	37861651	37862550	+	0	NA	promoter-TSS (NR_110531)	promoter-TSS (NR_110531)	220	NM_001008392	10217		NM_005808	ENSG00000144677	CTDSPL	C3orf8|HYA22|PSR1|RBSP3|SCP3	CTD small phosphatase like	protein-coding
183417	chr5	78292051	78292730	+	0	NA	intron (NM_003664, intron 1 of 26)	intron (NM_003664, intron 1 of 26)	2308	NM_003664	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
63579	chr14	20462921	20463180	+	0	NA	Intergenic	Intergenic	-1438	NM_001100814	90809		NM_144568	ENSG00000165782	PIP4P1	C14orf9|TMEM55B	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1	protein-coding
202253	chr6	156942401	156942600	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-93927	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
170948	chr3	194352201	194352600	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-1072	NM_001291988	1370		NM_001309	ENSG00000178772	CPN2	ACBP	carboxypeptidase N subunit 2	protein-coding
211904	chr7	112272951	112273250	+	0	NA	intron (NM_021994, intron 1 of 11)	L1M1|LINE|L1	66405	NM_021994	11179		NM_021994	ENSG00000198839	ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
221951	chr8	129937701	129938180	+	0	NA	intron (NM_001353279, intron 2 of 13)	intron (NM_001353279, intron 2 of 13)	1871	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
17084	chr1	156131401	156131800	+	0	NA	intron (NM_170707, intron 2 of 11)	AluJb|SINE|Alu	5430	NM_001257374	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
125897	chr2	24745421	24746480	+	0	NA	intron (NM_147233, intron 17 of 20)	L2b|LINE|L2	-47165	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
6010	chr1	27033401	27033800	+	0	NA	Intergenic	Intergenic	-20750	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
54225	chr12	79934501	79936300	+	0	NA	promoter-TSS (NM_002480)	promoter-TSS (NM_002480)	55	NM_001143885	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
33817	chr10	123451851	123452070	+	0	NA	Intergenic	Intergenic	-214395	NM_153442	2849		NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding
167500	chr3	129183001	129184650	+	0	NA	promoter-TSS (NM_001127192)	promoter-TSS (NM_001127192)	71	NM_001127196	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
134559	chr2	144184951	144185450	+	0	NA	intron (NM_001354351, intron 7 of 15)	MIRb|SINE|MIR	52139	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
43889	chr11	88357521	88357900	+	0	NA	Intergenic	L2c|LINE|L2	-19974	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
204557	chr7	5141601	5142050	+	0	NA	intron (NR_034163, intron 1 of 5)	AluY|SINE|Alu	2721	NR_034163	645700		NR_034163	ENSG00000291037	ZNF890P	-	zinc finger protein 890, pseudogene	pseudo
34667	chr10	133348921	133349300	+	0	NA	intron (NM_145202, intron 1 of 4)	(CA)n|Simple_repeat|Simple_repeat	1737	NM_145202	118471		NM_145202	ENSG00000165828	PRAP1	PRO1195|UPA	proline rich acidic protein 1	protein-coding
168086	chr3	138200601	138200930	+	0	NA	intron (NM_001363942, intron 2 of 21)	intron (NM_001363942, intron 2 of 21)	13234	NM_015396	25852		NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
68661	chr14	90235251	90235650	+	0	NA	Intergenic	Intergenic	-21103	NM_002802	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
57314	chr12	121674651	121675380	+	0	NA	Intergenic	Intergenic	-2371	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
179688	chr4	190079871	190080600	+	0	NA	Intergenic	CpG	15006	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
127681	chr2	43196121	43196480	+	0	NA	Intergenic	AluY|SINE|Alu	30306	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
230262	chr9	127910601	127912000	+	0	NA	intron (NM_175040, intron 3 of 4)	intron (NM_175040, intron 3 of 4)	5726	NM_175040	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
13553	chr1	115469901	115470100	+	0	NA	Intergenic	L2a|LINE|L2	-131751	NM_002506	4803		NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor	protein-coding
217528	chr8	29255851	29256480	+	0	NA	intron (NM_015254, intron 1 of 39)	intron (NM_015254, intron 1 of 39)	6905	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
192609	chr6	26031401	26032700	+	0	NA	promoter-TSS (NM_003537)	promoter-TSS (NM_003537)	49	NM_003537	8358		NM_003537	ENSG00000286522	H3C2	H3/l|H3C1|H3C10|H3C11|H3C12|H3C3|H3C4|H3C6|H3C7|H3C8|H3FL|HIST1H3B	H3 clustered histone 2	protein-coding
233134	chr9	137152671	137153100	+	0	NA	intron (NM_007327, intron 4 of 19)	(CATACA)n|Simple_repeat|Simple_repeat	13731	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
130551	chr2	85698151	85698450	+	0	NA	intron (NM_006433, intron 4 of 4)	intron (NM_006433, intron 4 of 4)	3942	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
146989	chr20	53216571	53217330	+	0	NA	intron (NM_001193421, intron 1 of 2)	intron (NM_001193421, intron 1 of 2)	31667	NM_001193421	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
220089	chr8	94259171	94259330	+	0	NA	intron (NM_005261, intron 2 of 4)	intron (NM_005261, intron 2 of 4)	3069	NM_005261	2669		NM_005261	ENSG00000164949	GEM	KIR	GTP binding protein overexpressed in skeletal muscle	protein-coding
100964	chr17	64510201	64510400	+	0	NA	intron (NM_138363, intron 3 of 19)	intron (NM_138363, intron 3 of 19)	3323	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
117984	chr19	33430171	33430880	+	0	NA	intron (NM_001166056, intron 7 of 12)	intron (NM_001166056, intron 7 of 12)	56001	NM_001252296	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
15001	chr1	148148521	148148780	+	0	NA	intron (NM_001385469, intron 1 of 23)	intron (NM_001385469, intron 1 of 23)	3631	NM_001101663	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
160183	chr3	23740571	23740830	+	0	NA	Intergenic	Intergenic	-65255	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
11009	chr1	84692171	84692330	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-1782	NM_001166295	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
162700	chr3	48989121	48991950	+	0	NA	exon (NM_177938, exon 1 of 9)	exon (NM_177938, exon 1 of 9)	294	NM_177939	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
16732	chr1	155254921	155256950	+	0	NA	promoter-TSS (NM_001267608)	promoter-TSS (NM_001267608)	-452	NM_006589	10712		NM_006589	ENSG00000160767	ENTREP3	C1orf2|COTE1|FAM189B	endosomal transmembrane epsin interactor 3	protein-coding
179415	chr4	184263851	184264530	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-46317	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
83915	chr16	29012271	29012430	+	0	NA	Intergenic	L2a|LINE|L2	27298	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
59446	chr13	25898621	25898880	+	0	NA	intron (NM_016529, intron 33 of 36)	L1PA4|LINE|L1	153266	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
71707	chr15	20339121	20339700	+	0	NA	Intergenic	Intergenic	56666	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
125391	chr2	11464221	11464530	+	0	NA	intron (NM_001278275, intron 1 of 7)	AluY|SINE|Alu	1786	NM_001278276	1876		NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
192959	chr6	27832671	27832830	+	0	NA	Intergenic	Intergenic	-1190	NM_003541	8362		NM_003541	ENSG00000273542	H4C12	H4-16|H4/d|H4C1|H4C11|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2iii|H4FD|HIST1H4K|dJ160A22.1	H4 clustered histone 12	protein-coding
14416	chr1	144318051	144318350	+	0	NA	Intergenic	Intergenic	-4262	NR_160535	105371215		NR_160535		LOC105371215	-	uncharacterized LOC105371215	ncRNA
143338	chr20	25751951	25752050	+	0	NA	intron (NR_135006, intron 1 of 1)	intron (NR_135006, intron 1 of 1)	792	NR_135006	105372582		NR_135006		LOC105372582	-	uncharacterized LOC105372582	ncRNA
124830	chr2	7727971	7728130	+	0	NA	Intergenic	Tigger4a|DNA|TcMar-Tigger	171605	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
61396	chr13	51594901	51595100	+	0	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	10538	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
152324	chr22	20391921	20392330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1990	NM_001256524	7625		NM_003426	ENSG00000185252	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
42341	chr11	68505601	68506200	+	0	NA	intron (NR_147971, intron 2 of 24)	intron (NR_147971, intron 2 of 24)	45148	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
137502	chr2	197159701	197160750	+	0	NA	intron (NM_153697, intron 2 of 9)	MIR|SINE|MIR	-37766	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
181571	chr5	43190621	43190880	+	0	NA	Intergenic	Intergenic	-1475	NM_153361	167359		NM_153361	ENSG00000177453	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
68879	chr14	91325161	91326100	+	0	NA	intron (NM_001080414, intron 11 of 29)	AluJb|SINE|Alu	-71750	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
209871	chr7	90463071	90463800	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-6204	NM_001365443	102723899		NM_001365443	ENSG00000251154	PTTG1IP2	-	PTTG1IP family member 2	protein-coding
21951	chr1	207960371	207960530	+	0	NA	intron (NR_167983, intron 2 of 2)	intron (NR_167983, intron 2 of 2)	1459	NR_167983	105372883		NR_167982		LINC02767	-	long intergenic non-protein coding RNA 2767	ncRNA
25959	chr10	11610701	11612040	+	0	NA	promoter-TSS (NR_160647)	promoter-TSS (NR_160647)	69	NR_160647	107984208		NR_160647	ENSG00000271360	USP6NL-AS1	-	USP6NL antisense RNA 1	ncRNA
120213	chr19	42298171	42298980	+	0	NA	intron (NM_002573, intron 4 of 4)	intron (NM_002573, intron 4 of 4)	-3557	NM_199285	284338		NM_199285	ENSG00000188368	PRR19	-	proline rich 19	protein-coding
169318	chr3	158847251	158847800	+	0	NA	Intergenic	Intergenic	45471	NM_001167903	64747		NM_022736	ENSG00000118855	MFSD1	Minerva|SMAP4	major facilitator superfamily domain containing 1	protein-coding
6989	chr1	31815521	31816330	+	0	NA	intron (NM_144569, intron 1 of 15)	intron (NM_144569, intron 1 of 15)	126	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
149964	chr21	36389521	36390030	+	0	NA	intron (NM_005441, intron 3 of 13)	(TG)n|Simple_repeat|Simple_repeat	4383	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
177785	chr4	122945101	122945680	+	0	NA	intron (NM_001317799, intron 8 of 10)	L1PA4|LINE|L1	22312	NM_001345856	166378		NM_145207	ENSG00000145375	AFG2A	AFG2|EHLMRS|NEDHSB|SPAF|SPATA5	AFG2 AAA ATPase homolog A	protein-coding
120982	chr19	45728221	45728480	+	0	NA	intron (NM_001329633, intron 1 of 1)	intron (NM_001329633, intron 1 of 1)	2546	NM_001080469	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
64511	chr14	24369771	24369930	+	0	NA	exon (NM_001136022, exon 3 of 10)	exon (NM_001136022, exon 3 of 10)	768	NM_001198966	4776		NM_004554	ENSG00000100968	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T cells 4	protein-coding
154544	chr22	36164821	36165250	+	0	NA	5' UTR (NM_145642, exon 1 of 4)	5' UTR (NM_145642, exon 1 of 4)	1142	NM_145642	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
48589	chr12	10311251	10311680	+	0	NA	non-coding (NR_147038, exon 4 of 6)	non-coding (NR_147038, exon 4 of 6)	3595	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
38517	chr11	45891321	45892000	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	6009	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
60830	chr13	45400021	45400400	+	0	NA	intron (NM_001286806, intron 6 of 8)	AluJb|SINE|Alu	-17952	NR_047031	100874259		NR_047031	ENSG00000251015	SLC25A30-AS1	-	SLC25A30 antisense RNA 1	ncRNA
90574	chr17	1528771	1529130	+	0	NA	intron (NM_006224, intron 10 of 11)	AluSx|SINE|Alu	12031	NR_028514	100306951		NR_028514	ENSG00000236618	PITPNA-AS1	-	PITPNA antisense RNA 1	ncRNA
39092	chr11	48013001	48014930	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	33406	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
22224	chr1	212562301	212562700	+	0	NA	Intergenic	AluSp|SINE|Alu	-2834	NM_001030287	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
2999	chr1	12046621	12047900	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-16043	NM_001243	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
113442	chr19	9821351	9821650	+	0	NA	Intergenic	Intergenic	-2421	NM_001316940	54850		NM_017703	ENSG00000127452	FBXL12	Fbl12	F-box and leucine rich repeat protein 12	protein-coding
52938	chr12	57433871	57434230	+	0	NA	promoter-TSS (NM_005538)	promoter-TSS (NM_005538)	-734	NM_005538	3626		NM_005538	ENSG00000175189	INHBC	IHBC	inhibin subunit beta C	protein-coding
192731	chr6	26369821	26370280	+	0	NA	intron (NM_001197249, intron 3 of 9)	LTR33|LTR|ERVL	1872	NM_001197246	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
146548	chr20	49984171	49984780	+	0	NA	intron (NM_005985, intron 2 of 2)	intron (NM_005985, intron 2 of 2)	1495	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
29417	chr10	70222651	70223180	+	0	NA	intron (NM_021129, intron 2 of 10)	L1PA4|LINE|L1	10514	NM_021129	5464		NM_021129	ENSG00000180817	PPA1	HEL-S-66p|IOPPP|PP|PP1|SID6-8061	inorganic pyrophosphatase 1	protein-coding
61158	chr13	48974951	48976100	+	0	NA	promoter-TSS (NM_001079673)	promoter-TSS (NM_001079673)	-387	NM_001079673	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
141770	chr2	242031201	242032150	+	0	NA	intron (NR_110220, intron 3 of 3)	intron (NR_110220, intron 3 of 3)	30466	NR_149023	285097		NM_178530	ENSG00000280119	LOC285097	-	uncharacterized FLJ38379	ncRNA
184744	chr5	109711571	109711930	+	0	NA	intron (NM_002372, intron 1 of 21)	intron (NM_002372, intron 1 of 21)	22384	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
174581	chr4	40242801	40243000	+	0	NA	intron (NM_001278363, intron 2 of 2)	intron (NM_001278363, intron 2 of 2)	45869	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
47635	chr12	6201401	6201800	+	0	NA	intron (NM_001769, intron 1 of 7)	intron (NM_001769, intron 1 of 7)	1200	NM_001769	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
165941	chr3	107596401	107596800	+	0	NA	intron (NM_020235, intron 2 of 16)	intron (NM_020235, intron 2 of 16)	73638	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
20930	chr1	202199221	202200250	+	0	NA	intron (NM_001017403, intron 1 of 17)	MIRc|SINE|MIR	-3977	NM_021636	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
52289	chr12	54587351	54587780	+	0	NA	intron (NM_006741, intron 1 of 6)	intron (NM_006741, intron 1 of 6)	1094	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
86501	chr16	67051501	67052000	+	0	NA	intron (NM_001368708, intron 3 of 4)	AluSx|SINE|Alu	22601	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
190861	chr6	2037551	2037650	+	0	NA	intron (NM_001253846, intron 4 of 10)	MLT1I|LTR|ERVL-MaLR	138391	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
151771	chr22	18000911	18002330	+	0	NA	intron (NM_015241, intron 1 of 31)	CpG	-20659	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
186446	chr5	136563601	136564130	+	0	NA	Intergenic	LTR22B|LTR|ERVK	-198320	NM_001167576	57113		NM_020389	ENSG00000069018	TRPC7	TRP7	transient receptor potential cation channel subfamily C member 7	protein-coding
145257	chr20	39049851	39050750	+	0	NA	Intergenic	CpG	87956	NR_033905	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
105075	chr17	82097601	82099850	+	0	NA	promoter-TSS (NM_004104)	promoter-TSS (NM_004104)	-489	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
173248	chr4	6974101	6974950	+	0	NA	intron (NM_020773, intron 3 of 13)	L1MEf|LINE|L1	-12684	NM_001113363	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
104473	chr17	81121521	81122180	+	0	NA	exon (NM_004920, exon 10 of 13)	exon (NM_004920, exon 10 of 13)	3523	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
802	chr1	1550201	1550730	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	-9841	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
28979	chr10	63256221	63256730	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	12748	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
58687	chr12	132549201	132549500	+	0	NA	intron (NM_001382740, intron 5 of 11)	CpG	-32647	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
103786	chr17	79019521	79019950	+	0	NA	intron (NR_040019, intron 2 of 2)	intron (NR_040019, intron 2 of 2)	-3199	NM_153372	114897		NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and TNF related 1	protein-coding
92716	chr17	14200701	14202650	+	0	NA	intron (NM_001303, intron 6 of 6)	intron (NM_001303, intron 6 of 6)	35187	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
229118	chr9	114404021	114404280	+	0	NA	intron (NM_015404, intron 9 of 11)	L2b|LINE|L2	-9745	NM_030767	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
65859	chr14	55055371	55055930	+	0	NA	intron (NM_144578, intron 1 of 3)	MER44B|DNA|TcMar-Tigger	4003	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
61851	chr13	76979621	76980480	+	0	NA	Intergenic	L1PA8|LINE|L1	-12031	NM_001366624	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
77963	chr15	89369451	89369550	+	0	NA	intron (NR_133003, intron 1 of 6)	MIR3|SINE|MIR	1401	NR_133003	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
133110	chr2	112648171	112648330	+	0	NA	intron (NM_005415, intron 4 of 10)	intron (NM_005415, intron 4 of 10)	2311	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
106676	chr18	23226571	23226930	+	0	NA	intron (NR_023359, intron 4 of 6)	intron (NR_023359, intron 4 of 6)	70925	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
168534	chr3	144295001	144295550	+	0	NA	Intergenic	Intergenic	322194	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
184643	chr5	107468921	107469780	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	201587	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
215792	chr8	2193971	2194130	+	0	NA	Intergenic	Intergenic	117461	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
233616	chrX	376401	376850	+	0	NA	intron (NM_013239, intron 1 of 12)	intron (NM_013239, intron 1 of 12)	10282	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
206170	chr7	28072951	28073250	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-107357	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
190605	chr5	181167701	181168050	+	0	NA	Intergenic	L1MD2|LINE|L1	12932	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
11663	chr1	91813771	91814130	+	0	NA	intron (NR_036634, intron 2 of 17)	MER1B|DNA|hAT-Charlie	72201	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
24030	chr1	235276521	235276780	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJo|SINE|Alu	-50566	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
46204	chr11	123517521	123518350	+	0	NA	intron (NM_001330396, intron 2 of 19)	intron (NM_001330396, intron 2 of 19)	-7691	NM_001286563	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
82143	chr16	14823771	14823930	+	0	NA	intron (NR_023387, intron 1 of 1).2	AluJr|SINE|Alu	852	NR_023387	730013		NR_023387	ENSG00000290943	ABCC6P2	-	ATP binding cassette subfamily C member 6 pseudogene 2	pseudo
91323	chr17	4369451	4369750	+	0	NA	Intergenic	Intergenic	-2926	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
224814	chr9	26889851	26890550	+	0	NA	intron (NM_024828, intron 1 of 5)	AluSx1|SINE|Alu	2602	NM_024828	79886		NM_024828	ENSG00000120159	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
83727	chr16	28552621	28552880	+	0	NA	Intergenic	Intergenic	-1170	NM_138414	112869		NM_138414	ENSG00000176476	SGF29	CCDC101|STAF36|TDRD29	SAGA complex associated factor 29	protein-coding
222085	chr8	130357601	130359500	+	0	NA	intron (NM_001362924, intron 2 of 30)	CpG-27576	-62017	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
171269	chr3	195871471	195871630	+	0	NA	intron (NM_005781, intron 10 of 14)	intron (NM_005781, intron 10 of 14)	10845	NR_106887	102465977		NR_106887	ENSG00000276489	MIR6829	hsa-mir-6829	microRNA 6829	ncRNA
190955	chr6	2916301	2917100	+	0	NA	Intergenic	Intergenic	-13391	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
22712	chr1	224151271	224151430	+	0	NA	intron (NM_001136115, intron 3 of 3)	intron (NM_001136115, intron 3 of 3)	-31890	NM_001321541	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
73074	chr15	40924071	40924730	+	0	NA	Intergenic	Intergenic	-4940	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
87709	chr16	74986671	74986830	+	0	NA	Intergenic	Intergenic	-1604	NM_001324172	79726		NM_030581	ENSG00000103091	WDR59	CDW12|FP977|p90-120	WD repeat domain 59	protein-coding
139346	chr2	219629921	219630180	+	0	NA	intron (NR_048551, intron 5 of 22)	intron (NR_048551, intron 5 of 22)	2420	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
220383	chr8	100181471	100181630	+	0	NA	intron (NM_001374321, intron 4 of 18)	MLT1C|LTR|ERVL-MaLR	22963	NM_003114	6674		NM_003114	ENSG00000104450	SPAG1	CILD28|CT140|DNAAF13|HEL-S-268|HSD-3.8|SP75|TPIS	sperm associated antigen 1	protein-coding
74338	chr15	58544821	58544900	+	0	NA	intron (NM_000236, intron 4 of 8)	intron (NM_000236, intron 4 of 8)	-46125	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
91475	chr17	4887651	4887950	+	0	NA	intron (NM_015716, intron 12 of 30)	intron (NM_015716, intron 12 of 30)	-11736	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
126977	chr2	36355251	36357020	+	0	NA	promoter-TSS (NR_037631)	promoter-TSS (NR_037631)	357	NM_016441	51232		NM_016441	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1	protein-coding
197165	chr6	59597001	59597400	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1635754	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
238248	chrX	144230821	144230900	+	0	NA	Intergenic	LTR12C|LTR|ERV1	346789	NR_121210	389898		NM_001012989	ENSG00000276380	UBE2NL	Li174	ubiquitin conjugating enzyme E2 N like (gene/pseudogene)	protein-coding
69190	chr14	92661871	92662480	+	0	NA	intron (NM_024832, intron 7 of 9)	intron (NM_024832, intron 7 of 9)	85941	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
211931	chr7	112462921	112463230	+	0	NA	intron (NR_120333, intron 7 of 11)	intron (NR_120333, intron 7 of 11)	11017	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
168386	chr3	141955271	141955430	+	0	NA	intron (NM_006286, intron 9 of 10)	intron (NM_006286, intron 9 of 10)	45021	NM_001178140	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
123919	chr19	55358021	55358830	+	0	NA	exon (NM_001145402, exon 9 of 11)	exon (NM_001145402, exon 9 of 11)	-3706	NM_001369799	125965		NM_144613	ENSG00000160471	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit 6B2	protein-coding
75065	chr15	64250821	64251550	+	0	NA	intron (NM_001329607, intron 4 of 11)	intron (NM_001329607, intron 4 of 11)	-88163	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
1402	chr1	2552321	2552650	+	0	NA	non-coding (NR_037844, exon 5 of 7)	non-coding (NR_037844, exon 5 of 7)	-3880	NM_001297605	8764		NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
25398	chr10	6518821	6520000	+	0	NA	intron (NM_001323265, intron 1 of 17)	LTR51|LTR|ERV1	60866	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
180641	chr5	17189551	17189650	+	0	NA	intron (NR_027253, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	-27223	NM_001271606	10409		NM_006317	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant membrane attached signal protein 1	protein-coding
112648	chr19	6833751	6834050	+	0	NA	intron (NM_005428, intron 18 of 26)	intron (NM_005428, intron 18 of 26)	-53679	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
73696	chr15	45035321	45035980	+	0	NA	intron (NM_003104, intron 1 of 8)	LTR12E|LTR|ERV1	12455	NR_034039	6652		NM_003104	ENSG00000140263	SORD	HEL-S-95n|HMNR8|RDH|SDH|SORD1|SORDD|XDH	sorbitol dehydrogenase	protein-coding
182997	chr5	72269051	72269350	+	0	NA	intron (NM_001286748, intron 4 of 11)	MER91A|DNA|hAT-Tip100	51040	NM_001286751	23107		NM_015084	ENSG00000113048	MRPS27	MRP-S27|S27mt|mS27	mitochondrial ribosomal protein S27	protein-coding
26462	chr10	17512571	17512730	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	-58055	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
109274	chr19	541401	542050	+	0	NA	3' UTR (NM_004359, exon 5 of 5)	3' UTR (NM_004359, exon 5 of 5)	-2328	NM_005317	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
6013	chr1	27045701	27046300	+	0	NA	Intergenic	Intergenic	-33150	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
159470	chr3	14136951	14137800	+	0	NA	intron (NM_024334, intron 10 of 11)	intron (NM_024334, intron 10 of 11)	12323	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
149471	chr21	31730851	31733900	+	0	NA	promoter-TSS (NM_020706)	promoter-TSS (NM_020706)	-257	NM_001145444	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
69165	chr14	92600171	92600930	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	24316	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
63211	chr13	113836201	113837280	+	0	NA	intron (NM_000820, intron 6 of 14)	GA-rich|Low_complexity|Low_complexity	21130	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
221634	chr8	125911821	125912500	+	0	NA	Intergenic	Intergenic	39037	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
75090	chr15	64426821	64428230	+	0	NA	intron (NR_135855, intron 10 of 11)	AluSz|SINE|Alu	-33053	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
133063	chr2	112404521	112405100	+	0	NA	intron (NM_005054, intron 8 of 22).3	AluY|SINE|Alu	28804	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
161316	chr3	39409871	39410230	+	0	NA	intron (NM_001304288, intron 3 of 6)	AluJb|SINE|Alu	-1004	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
51762	chr12	53297171	53298000	+	0	NA	intron (NM_002624, intron 3 of 5)	intron (NM_002624, intron 3 of 5)	2043	NM_002624	5204		NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
28176	chr10	43808121	43808380	+	0	NA	Intergenic	Intergenic	-17833	NR_002726	10151		NM_005758		HNRNPA3P1	D10S102|FBRNP|HNRPA3|HNRPA3P1	heterogeneous nuclear ribonucleoprotein A3 pseudogene 1	pseudo
77345	chr15	82537201	82538300	+	0	NA	intron (NR_111943, intron 3 of 3)	L1ME3D|LINE|L1	2707	NM_001021	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
224381	chr9	8429271	8429450	+	0	NA	intron (NM_130391, intron 21 of 31)	MIRc|SINE|MIR	304586	NM_130393	5789		NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|R-PTP-delta|RPTPDELTA	protein tyrosine phosphatase receptor type D	protein-coding
58825	chr12	132835821	132836750	+	0	NA	3' UTR (NM_001161346, exon 18 of 18)	3' UTR (NM_001161346, exon 18 of 18)	-7416	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
141129	chr2	239119671	239119980	+	0	NA	intron (NM_006037, intron 12 of 26)	intron (NM_006037, intron 12 of 26)	-33899	NR_039643	100616493		NR_039643	ENSG00000264810	MIR4441	-	microRNA 4441	ncRNA
200255	chr6	132489901	132490100	+	0	NA	intron (NR_137169, intron 2 of 8)	intron (NR_137169, intron 2 of 8)	22783	NM_001326578	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
32869	chr10	110081801	110082650	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	69755	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
14253	chr1	143251621	143252180	+	0	NA	Intergenic	Intergenic	170692	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
174006	chr4	26359401	26359700	+	0	NA	intron (NM_001374403, intron 1 of 11)	CpG	16410	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
92095	chr17	7567421	7567880	+	0	NA	intron (NM_015670, intron 7 of 10)	L2a|LINE|L2	-5175	NM_001416	1973		NM_001416	ENSG00000161960	EIF4A1	DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I	eukaryotic translation initiation factor 4A1	protein-coding
94389	chr17	28952201	28952930	+	0	NA	Intergenic	CpG	-1047	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
171686	chr3	197752351	197752650	+	0	NA	intron (NR_027840, intron 1 of 8)	(TATA)n|Simple_repeat|Simple_repeat	2253	NR_027840	84248		NM_032288	ENSG00000122068	FYTTD1	UIF	forty-two-three domain containing 1	protein-coding
1092	chr1	2003551	2004050	+	0	NA	promoter-TSS (NM_001304360)	promoter-TSS (NM_001304360)	-14	NM_001304360	85452		NM_001003808	ENSG00000142609	CFAP74	C1orf222|CILD49|KIAA1751	cilia and flagella associated protein 74	protein-coding
229722	chr9	124861261	124863080	+	0	NA	promoter-TSS (NM_007209)	promoter-TSS (NM_007209)	40	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
44648	chr11	110300521	110301330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4213	NM_001260493	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
96466	chr17	40236121	40236580	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSz6|SINE|Alu	17046	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
64759	chr14	34564971	34565330	+	0	NA	intron (NR_159357, intron 12 of 12)	AluY|SINE|Alu	-8761	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
170583	chr3	186849351	186849950	+	0	NA	intron (NM_001177800, intron 2 of 3)	(CTGTTT)n|Simple_repeat|Simple_repeat	6940	NM_001177800	9370		NM_004797	ENSG00000181092	ADIPOQ	ACDC|ACRP30|ADIPQTL1|ADPN|APM-1|APM1|GBP28	adiponectin, C1Q and collagen domain containing	protein-coding
62682	chr13	102640301	102640700	+	0	NA	intron (NR_160411, intron 16 of 28)	intron (NR_160411, intron 16 of 28)	43514	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
223012	chr8	143284521	143285630	+	0	NA	Intergenic	Intergenic	-3375	NR_120682	100507316		NR_120682	ENSG00000253716	MINCR	LINC01604	MYC-induced long non-coding RNA	ncRNA
140274	chr2	232322621	232323330	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-55776	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
97263	chr17	43008501	43009300	+	0	NA	intron (NM_005533, intron 1 of 6)	AluSq2|SINE|Alu	2116	NM_005533	3430		NM_005533	ENSG00000068079	IFI35	IFP35	interferon induced protein 35	protein-coding
206729	chr7	36607901	36608100	+	0	NA	intron (NM_001177506, intron 11 of 21)	intron (NM_001177506, intron 11 of 21)	-7880	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
100471	chr17	61416501	61417330	+	0	NA	Intergenic	CpG	5164	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
136727	chr2	181197051	181197650	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	73513	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
178616	chr4	152099251	152099350	+	0	NA	Intergenic	Intergenic	-1453	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
213700	chr7	140212251	140213300	+	0	NA	Intergenic	Intergenic	35514	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
179299	chr4	177336701	177336900	+	0	NA	intron (NM_018248, intron 4 of 9)	intron (NM_018248, intron 4 of 9)	26926	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
92060	chr17	7508971	7509630	+	0	NA	intron (NM_000937, intron 21 of 29)	intron (NM_000937, intron 21 of 29)	24934	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
194863	chr6	34529201	34529400	+	0	NA	intron (NM_001199583, intron 4 of 9)	intron (NM_001199583, intron 4 of 9)	14428	NM_001199583	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
115456	chr19	15346071	15346430	+	0	NA	Intergenic	AluJo|SINE|Alu	-13711	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
33004	chr10	110574551	110574880	+	0	NA	intron (NM_005445, intron 3 of 28)	intron (NM_005445, intron 3 of 28)	7020	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
56354	chr12	113083821	113084100	+	0	NA	intron (NM_004416, intron 3 of 9)	intron (NM_004416, intron 3 of 9)	27230	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
187942	chr5	149128071	149128380	+	0	NA	Intergenic	Intergenic	-13222	NM_001301018	22885		NM_014945	ENSG00000173210	ABLIM3	HMFN1661	actin binding LIM protein family member 3	protein-coding
209077	chr7	74792821	74793080	+	0	NA	Intergenic	AluSx1|SINE|Alu	18988	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
221733	chr8	127633701	127633900	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	100167	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
139079	chr2	218868571	218870450	+	0	NA	intron (NM_006522, intron 1 of 3)	intron (NM_006522, intron 1 of 3)	9705	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
49245	chr12	19437971	19438350	+	0	NA	Intergenic	Intergenic	-1332	NM_153207	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
98172	chr17	46089551	46090050	+	0	NA	intron (NM_015443, intron 3 of 14).2	MIRb|SINE|MIR	90550	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
190067	chr5	177609271	177610200	+	0	NA	3' UTR (NM_007255, exon 6 of 6)	3' UTR (NM_007255, exon 6 of 6)	9603	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
187024	chr5	139774871	139776030	+	0	NA	Intergenic	Intergenic	-20358	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
4669	chr1	22450701	22450900	+	0	NA	Intergenic	Intergenic	-1051	NM_014870	9923		NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
95152	chr17	35083971	35084750	+	0	NA	intron (NR_037713, intron 1 of 6)	AluSx|SINE|Alu	4866	NR_037713	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
23440	chr1	228415901	228417330	+	0	NA	5' UTR (NM_001024940, exon 1 of 7)	5' UTR (NM_001024940, exon 1 of 7)	246	NM_016102	51127		NM_016102	ENSG00000162931	TRIM17	RBCC|RNF16|terf	tripartite motif containing 17	protein-coding
188158	chr5	150439121	150440150	+	0	NA	Intergenic	AluSg|SINE|Alu	10104	NM_005617	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
232054	chr9	133464171	133464800	+	0	NA	intron (NM_001135775, intron 2 of 3)	intron (NM_001135775, intron 2 of 3)	4507	NM_017586	11094		NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
184676	chr5	108345521	108345800	+	0	NA	intron (NM_001163315, intron 4 of 8)	intron (NM_001163315, intron 4 of 8)	36438	NM_001163315	64839		NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
106643	chr18	22799051	22799350	+	0	NA	Intergenic	Intergenic	-12363	NR_110782	101927571		NR_110782	ENSG00000266850	LOC101927571	-	uncharacterized LOC101927571	ncRNA
112960	chr19	7823701	7824100	+	0	NA	Intergenic	L1MB4|LINE|L1	-6318	NM_001159944	115704		NM_145245	ENSG00000142459	EVI5L	-	ecotropic viral integration site 5 like	protein-coding
139373	chr2	221559821	221560080	+	0	NA	intron (NM_004438, intron 3 of 17)	intron (NM_004438, intron 3 of 17)	12354	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
331	chr1	993471	994030	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	6347	NM_021170	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
124211	chr19	56838171	56838330	+	0	NA	promoter-TSS (NM_001369733)	promoter-TSS (NM_001369733)	-442	NM_001369733	5178		NM_006210	ENSG00000198300	PEG3	PW1|ZKSCAN22|ZNF904|ZSCAN24	paternally expressed 3	protein-coding
31777	chr10	98164771	98165200	+	0	NA	intron (NM_001256621, intron 3 of 7)	AluSz6|SINE|Alu	30328	NM_001256619	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
131348	chr2	96162571	96162980	+	0	NA	Intergenic	AluJb|SINE|Alu	-17335	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
178134	chr4	142264671	142265150	+	0	NA	intron (NM_001385452, intron 5 of 21)	MLT1B|LTR|ERVL-MaLR	40922	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
226238	chr9	66269501	66270800	+	0	NA	Intergenic	SST1|Satellite|centr	-105244	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
197504	chr6	75619671	75619830	+	0	NA	intron (NM_015571, intron 1 of 23)	L1MC3|LINE|L1	17870	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
211759	chr7	107202871	107203230	+	0	NA	TTS (NM_012257)	TTS (NM_012257)	34047	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
68746	chr14	91036021	91036480	+	0	NA	intron (NM_001322228, intron 1 of 15)	intron (NM_001322228, intron 1 of 15)	23874	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
119321	chr19	39905371	39905980	+	0	NA	intron (NM_003890, intron 8 of 28)	intron (NM_003890, intron 8 of 28)	28951	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
56633	chr12	118356901	118358100	+	0	NA	intron (NM_001346487, intron 1 of 20)	intron (NM_001346487, intron 1 of 20)	2205	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
106744	chr18	23545871	23546430	+	0	NA	intron (NM_000271, intron 11 of 24)	AluSx1|SINE|Alu	40356	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
114782	chr19	13766421	13767530	+	0	NA	intron (NM_001031727, intron 3 of 5)	MER2|DNA|TcMar-Tigger	2453	NM_001031727	84245		NM_032285	ENSG00000037757	MRI1	M1Pi|MRDI|MTNA|Ypr118w	methylthioribose-1-phosphate isomerase 1	protein-coding
108028	chr18	58896271	58896430	+	0	NA	intron (NM_001375912, intron 2 of 9)	L1MB4|LINE|L1	31473	NM_001353538	55205		NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
218907	chr8	60748301	60748500	+	0	NA	intron (NM_001316690, intron 1 of 4)	intron (NM_001316690, intron 1 of 4)	7141	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
66370	chr14	61474101	61474650	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	95819	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
107154	chr18	35265821	35266230	+	0	NA	intron (NM_001112734, intron 1 of 3)	L2b|LINE|L2	24204	NM_001112734	100101467		NM_001112734	ENSG00000186814	ZSCAN30	ZNF-WYM|ZNF397OS|ZNF917	zinc finger and SCAN domain containing 30	protein-coding
134553	chr2	143978151	143978250	+	0	NA	intron (NM_001354353, intron 7 of 9)	intron (NM_001354353, intron 7 of 9)	41133	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
128680	chr2	61481771	61482130	+	0	NA	intron (NM_003400, intron 23 of 24)	AluSg7|SINE|Alu	-10863	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
53899	chr12	71392651	71392850	+	0	NA	Intergenic	Intergenic	-47048	NR_110596	8549		NM_003667	ENSG00000139292	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine rich repeat containing G protein-coupled receptor 5	protein-coding
37194	chr11	14300501	14301020	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	57725	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
183484	chr5	79264951	79265250	+	0	NA	intron (NM_152405, intron 1 of 10)	AluY|SINE|Alu	28969	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
228186	chr9	97615371	97616250	+	0	NA	intron (NM_139246, intron 4 of 9)	intron (NM_139246, intron 4 of 9)	17558	NM_139246	158427		NM_139246	ENSG00000136925	TSTD2	C9orf97	thiosulfate sulfurtransferase like domain containing 2	protein-coding
25156	chr10	4982151	4982250	+	0	NA	3' UTR (NM_001353, exon 9 of 9)	3' UTR (NM_001353, exon 9 of 9)	18785	NM_001353	1645		NM_001353	ENSG00000187134	AKR1C1	2-ALPHA-HSD|20-ALPHA-HSD|C9|DD1|DD1/DD2|DDH|DDH1|H-37|HAKRC|HBAB|MBAB	aldo-keto reductase family 1 member C1	protein-coding
122493	chr19	49567171	49568700	+	0	NA	intron (NM_001270960, intron 1 of 8)	AluSx1|SINE|Alu	12621	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
17422	chr1	156655021	156655730	+	0	NA	intron (NM_021948, intron 8 of 13)	intron (NM_021948, intron 8 of 13)	13258	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
141994	chr20	1434001	1434200	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	33592	NM_018839	55968		NM_016143	ENSG00000088833	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 cofactor	protein-coding
72631	chr15	38440311	38441400	+	0	NA	Intergenic	L1P4b|LINE|L1	-13272	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
218657	chr8	57420521	57420780	+	0	NA	Intergenic	LTR43-int|LTR|ERV1	76863	NR_125818	101929488		NR_125818	ENSG00000253871	LOC101929488	-	uncharacterized LOC101929488	ncRNA
50487	chr12	47783321	47783780	+	0	NA	TTS (NM_017842)	TTS (NM_017842)	10312	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
164181	chr3	56799221	56799900	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	2389	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
104446	chr17	81091751	81091850	+	0	NA	intron (NM_001385147, intron 5 of 12)	intron (NM_001385147, intron 5 of 12)	-5811	NM_001385159	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
221116	chr8	118101971	118102130	+	0	NA	intron (NM_000127, intron 1 of 10)	AluSx1|SINE|Alu	9776	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
203367	chr6	170399971	170400280	+	0	NA	intron (NM_032448, intron 9 of 10)	intron (NM_032448, intron 9 of 10)	69364	NR_039787	100616430		NR_039787	ENSG00000266245	MIR4644	-	microRNA 4644	ncRNA
133369	chr2	117834121	117834380	+	0	NA	intron (NR_158150, intron 1 of 6)	intron (NR_158150, intron 1 of 6)	519	NR_158150	107985939		NR_158150		LOC107985939	-	uncharacterized LOC107985939	ncRNA
186473	chr5	138030621	138031100	+	0	NA	intron (NM_016603, intron 1 of 22)	AluSx1|SINE|Alu	-1914	NR_037900	100130172		NR_037900		FAM13B-AS1	-	FAM13B antisense RNA 1	ncRNA
128569	chr2	60899451	60900030	+	0	NA	intron (NM_001291746, intron 3 of 9)	intron (NM_001291746, intron 3 of 9)	18166	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
132257	chr2	102619171	102619730	+	0	NA	promoter-TSS (NM_003048)	promoter-TSS (NM_003048)	-103	NM_003048	6549		NM_003048	ENSG00000115616	SLC9A2	NHE2	solute carrier family 9 member A2	protein-coding
202259	chr6	156982251	156982350	+	0	NA	intron (NM_001371656, intron 6 of 20)	HAL1|LINE|L1	-54127	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
121610	chr19	47418671	47419450	+	0	NA	intron (NM_001346148, intron 1 of 12)	CpG	467	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
176768	chr4	102429621	102429980	+	0	NA	intron (NR_136202, intron 2 of 4)	L2|LINE|L2	-71559	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
139046	chr2	218661621	218661880	+	0	NA	intron (NR_163955, intron 3 of 7)	intron (NR_163955, intron 3 of 7)	2067	NM_001371443	617		NM_004328	ENSG00000074582	BCS1L	BCS|BCS1|BJS|FLNMS|GRACILE|Hs.6719|MC3DN1|PTD|h-BCS|h-BCS1	BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone	protein-coding
160189	chr3	23802451	23803350	+	0	NA	Intergenic	AluSc5|SINE|Alu	-3055	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
81145	chr16	4405451	4406500	+	0	NA	intron (NM_001201473, intron 3 of 25)	MLT1C|LTR|ERVL-MaLR	9922	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
92325	chr17	8145721	8146460	+	0	NA	exon (NM_002616, exon 17 of 23)	exon (NM_002616, exon 17 of 23)	-1019	NR_106943	102465532		NR_106943	ENSG00000284117	MIR6883	hsa-mir-6883	microRNA 6883	ncRNA
74308	chr15	58295771	58295930	+	0	NA	Intergenic	L1ME3D|LINE|L1	-136141	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
3755	chr1	16662021	16662780	+	0	NA	Intergenic	AluSx1|SINE|Alu	4548	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
220083	chr8	94079701	94080080	+	0	NA	Intergenic	Intergenic	128665	NM_004063	1015		NM_004063	ENSG00000079112	CDH17	CDH16|HPT-1|HPT1	cadherin 17	protein-coding
87739	chr16	75199201	75200280	+	0	NA	Intergenic	Intergenic	7421	NM_001025200	440387		NM_001025200	ENSG00000168928	CTRB2	-	chymotrypsinogen B2	protein-coding
96280	chr17	39918051	39919180	+	0	NA	promoter-TSS (NM_001165959)	promoter-TSS (NM_001165959)	35	NM_001165959	55876		NM_018530	ENSG00000073605	GSDMB	GSDMB-1|GSDML|PP4052|PRO2521	gasdermin B	protein-coding
173512	chr4	9605671	9605900	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-49469	NR_031688	100302277		NR_031688	ENSG00000221275	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2	microRNA 548i-2	ncRNA
192953	chr6	27826051	27826650	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	2258	NM_021968	8363		NM_021968	ENSG00000197238	H4C11	H4-16|H4/e|H4C1|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2iv|H4FE|HIST1H4J|TEBIVANED2|TEVANED2|dJ160A22.2	H4 clustered histone 11	protein-coding
143974	chr20	32850721	32851430	+	0	NA	TTS (NM_012325)	TTS (NM_012325)	-7848	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
135158	chr2	157501001	157501250	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-57036	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
46452	chr11	128172351	128173030	+	0	NA	Intergenic	Intergenic	-36076	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
224506	chr9	19085021	19085630	+	0	NA	intron (NM_017645, intron 7 of 16)	intron (NM_017645, intron 7 of 16)	17579	NM_017645	54801		NM_017645	ENSG00000147874	HAUS6	Dgt6|FAM29A	HAUS augmin like complex subunit 6	protein-coding
126808	chr2	30445751	30446230	+	0	NA	Intergenic	Intergenic	-1256	NM_001304446	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
92473	chr17	8741851	8742100	+	0	NA	intron (NM_144681, intron 3 of 6)	intron (NM_144681, intron 3 of 6)	2861	NM_144681	146849		NM_144681	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
222385	chr8	133873851	133874150	+	0	NA	Intergenic	Intergenic	-12496	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
12690	chr1	109480371	109480530	+	0	NA	3' UTR (NM_001040709, exon 6 of 6)	3' UTR (NM_001040709, exon 6 of 6)	-3455	NM_153340	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
157997	chr22	49861871	49862380	+	0	NA	intron (NM_014838, intron 1 of 1)	intron (NM_014838, intron 1 of 1)	8281	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
24000	chr1	235244771	235245330	+	0	NA	intron (NM_016374, intron 7 of 23)	intron (NM_016374, intron 7 of 23)	-54934	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
117917	chr19	32976221	32976830	+	0	NA	exon (NM_152266, exon 5 of 5)	exon (NM_152266, exon 5 of 5)	4283	NM_001300978	91442		NM_152266	ENSG00000131944	FAAP24	C19orf40	FA core complex associated protein 24	protein-coding
168501	chr3	143727921	143728180	+	0	NA	intron (NM_173653, intron 4 of 15)	intron (NM_173653, intron 4 of 15)	120418	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
46234	chr11	124644021	124644680	+	0	NA	intron (NM_170601, intron 7 of 9)	intron (NM_170601, intron 7 of 9)	21486	NR_016021	84897		NM_032811	ENSG00000154144	TBRG1	NIAM|TB-5	transforming growth factor beta regulator 1	protein-coding
203861	chr7	1462551	1463100	+	0	NA	Intergenic	Intergenic	-3355	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
146212	chr20	48787921	48788500	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	39789	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
67844	chr14	73951971	73952780	+	0	NA	intron (NM_182476, intron 1 of 11)	AluSx1|SINE|Alu	2073	NM_182476	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
192603	chr6	26021101	26023300	+	0	NA	TTS (NM_003538)	TTS (NM_003538)	551	NM_003538	8359		NM_003538	ENSG00000278637	H4C1	H4-16|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4FA|HIST1H4A	H4 clustered histone 1	protein-coding
229895	chr9	126521801	126522430	+	0	NA	Intergenic	MIRc|SINE|MIR	-91813	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
61997	chr13	80454351	80454450	+	0	NA	Intergenic	L1MA5|LINE|L1	-113274	NM_005842	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
212112	chr7	116214271	116214430	+	0	NA	intron (NM_015641, intron 1 of 6)	intron (NM_015641, intron 1 of 6)	3811	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
146983	chr20	53035071	53035230	+	0	NA	intron (NM_173485, intron 1 of 2)	intron (NM_173485, intron 1 of 2)	62792	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
6141	chr1	27381001	27381300	+	0	NA	intron (NM_207397, intron 4 of 4)	intron (NM_207397, intron 4 of 4)	2183	NM_207397	388611		NM_207397	ENSG00000174950	CD164L2	EAPG6122|UNQ6122	CD164 molecule like 2	protein-coding
87568	chr16	72099021	72099630	+	0	NA	intron (NM_014003, intron 7 of 26)	intron (NM_014003, intron 7 of 26)	-4947	NM_001142318	54957		NM_017853	ENSG00000140830	TXNL4B	DLP|Dim2	thioredoxin like 4B	protein-coding
12665	chr1	109281701	109281900	+	0	NA	exon (NM_001350237, exon 3 of 7)	exon (NM_001350237, exon 3 of 7)	1344	NM_001350237	84722		NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
25028	chr10	3708051	3708230	+	0	NA	intron (NR_131187, intron 1 of 1)	AluY|SINE|Alu	77069	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
191928	chr6	15594371	15594530	+	0	NA	intron (NM_183040, intron 6 of 8)	AluSx1|SINE|Alu	68578	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
120219	chr19	42305671	42305830	+	0	NA	intron (NM_199285, intron 1 of 2)	MIR|SINE|MIR	-2950	NM_001145940	5050		NM_002573	ENSG00000079462	PAFAH1B3	PAFAHG	platelet activating factor acetylhydrolase 1b catalytic subunit 3	protein-coding
19182	chr1	172117751	172118450	+	0	NA	intron (NR_146559, intron 14 of 20)	intron (NR_146559, intron 14 of 20)	-20708	NR_036066	100422882		NR_036066	ENSG00000283152	MIR3120	mir-3120	microRNA 3120	ncRNA
1439	chr1	2630071	2630230	+	0	NA	intron (NM_033467, intron 1 of 23)	intron (NM_033467, intron 1 of 23)	2866	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
152942	chr22	22838121	22838530	+	0	NA	Intergenic	Intergenic	15549	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
58599	chr12	132474251	132475730	+	0	NA	Intergenic	CpG	-15161	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
203605	chr7	939851	940180	+	0	NA	intron (NM_001284308, intron 1 of 10)	intron (NM_001284308, intron 1 of 10)	5801	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
105375	chr17	82700521	82700980	+	0	NA	Intergenic	Intergenic	-2052	NM_006822	10966		NM_006822	ENSG00000141542	RAB40B	RAR|SEC4L	RAB40B, member RAS oncogene family	protein-coding
74742	chr15	63206051	63206650	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	16744	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
105840	chr18	2994401	2995900	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	16797	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
86531	chr16	67166951	67168250	+	0	NA	intron (NM_001374674, intron 8 of 12)	intron (NM_001374674, intron 8 of 12)	2855	NM_001374675	3299		NM_001538	ENSG00000102878	HSF4	CTM|CTRCT5	heat shock transcription factor 4	protein-coding
47605	chr12	5746971	5747130	+	0	NA	intron (NM_001364791, intron 11 of 24)	intron (NM_001364791, intron 11 of 24)	198209	NM_001278596	57101		NM_020373	ENSG00000047617	ANO2	C12orf3|TMEM16B	anoctamin 2	protein-coding
5957	chr1	26898621	26898880	+	0	NA	intron (NM_022078, intron 1 of 6)	AluJb|SINE|Alu	1717	NM_022078	63906		NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
20900	chr1	202158971	202161500	+	0	NA	promoter-TSS (NM_001364878)	promoter-TSS (NM_001364878)	-244	NM_080588	5778		NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase non-receptor type 7	protein-coding
75320	chr15	65306601	65306800	+	0	NA	Intergenic	L1M5|LINE|L1	2023	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
31257	chr10	92011801	92012240	+	0	NA	intron (NR_165098, intron 31 of 38)	L3|LINE|CR1	88250	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
119827	chr19	41358451	41359030	+	0	NA	intron (NM_030578, intron 2 of 3)	AluSz6|SINE|Alu	-4818	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
192704	chr6	26311371	26312190	+	0	NA	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-26246	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
203955	chr7	1555951	1556800	+	0	NA	promoter-TSS (NM_001097620)	promoter-TSS (NM_001097620)	-170	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
52908	chr12	57227251	57227350	+	0	NA	TTS (NM_007224)	TTS (NM_007224)	-2411	NM_001166356	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
167206	chr3	128414371	128414930	+	0	NA	Intergenic	(TCA)n|Simple_repeat|Simple_repeat	-48944	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
232440	chr9	136113171	136114030	+	0	NA	TTS (NM_001256526)	TTS (NM_001256526)	-4192	NR_165242	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
32520	chr10	102801671	102802030	+	0	NA	intron (NM_017787, intron 2 of 3)	(TTTC)n|Simple_repeat|Simple_repeat	25629	NM_017787	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
122215	chr19	48969151	48969400	+	0	NA	non-coding (NR_027763, exon 15 of 15)	non-coding (NR_027763, exon 15 of 15)	3966	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
16348	chr1	154295401	154295930	+	0	NA	Intergenic	Intergenic	23036	NM_006118	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
198530	chr6	106534571	106535350	+	0	NA	intron (NM_001371242, intron 8 of 21)	MIR3|SINE|MIR	23105	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
60800	chr13	45330551	45330650	+	0	NA	Intergenic	MER39|LTR|ERV1	5847	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
177100	chr4	108077351	108077650	+	0	NA	intron (NM_016269, intron 8 of 11)	SVA_F|Retroposon|SVA	72836	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
104479	chr17	81125471	81125630	+	0	NA	promoter-TSS (NR_030394)	promoter-TSS (NR_030394)	-177	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
64279	chr14	23365201	23365780	+	0	NA	promoter-TSS (NM_005864)	promoter-TSS (NM_005864)	-318	NM_001385607	10278		NM_005864	ENSG00000100842	EFS	CAS3|CASS3|EFS1|EFS2|HEFS|SIN	embryonal Fyn-associated substrate	protein-coding
42299	chr11	68454701	68455100	+	0	NA	Intergenic	Intergenic	-5852	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
234477	chrX	17923651	17923750	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-62402	NM_001172732	10742		NM_021785	ENSG00000131831	RAI2	-	retinoic acid induced 2	protein-coding
163728	chr3	52312021	52312280	+	0	NA	Intergenic	MIR3|SINE|MIR	-4169	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
65246	chr14	49896121	49896530	+	0	NA	3' UTR (NM_001663, exon 2 of 2)	3' UTR (NM_001663, exon 2 of 2)	3243	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
32671	chr10	103902101	103902330	+	0	NA	intron (NM_024928, intron 4 of 9)	intron (NM_024928, intron 4 of 9)	15969	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
169018	chr3	152446351	152446850	+	0	NA	intron (NM_001376853, intron 4 of 5)	intron (NM_001376853, intron 4 of 5)	-105610	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
14773	chr1	146045271	146045630	+	0	NA	Intergenic	HAL1|LINE|L1	6794	NR_104085	101954276		NR_104085	ENSG00000201558	RNVU1-6	RNU1-99|vU1.6	RNA, variant U1 small nuclear 6	snRNA
48697	chr12	10600621	10601320	+	0	NA	Intergenic	Intergenic	-1135	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
119545	chr19	40595551	40596080	+	0	NA	intron (NM_003573, intron 1 of 32)	AluJb|SINE|Alu	-1420	NM_001042544	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
60461	chr13	41055201	41055780	+	0	NA	intron (NM_001370329, intron 1 of 9)	L2c|LINE|L2	5896	NM_001370330	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
79921	chr16	1723451	1724350	+	0	NA	intron (NM_001318852, intron 1 of 31)	intron (NM_001318852, intron 1 of 31)	-11085	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
44426	chr11	104531201	104531430	+	0	NA	Intergenic	LTR50|LTR|ERVL	77987	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
99049	chr17	48906721	48907100	+	0	NA	intron (NR_135674, intron 1 of 3)	MER46C|DNA|TcMar-Tigger	-1497	NM_023079	65264		NM_023079	ENSG00000159202	UBE2Z	HOYS7|USE1	ubiquitin conjugating enzyme E2 Z	protein-coding
152024	chr22	19437801	19438000	+	0	NA	Intergenic	AluSq|SINE|Alu	4961	NM_001318152	64976		NM_003776	ENSG00000185608	MRPL40	L40mt|MRP-L22|MRP-L40|MRPL22|NLVCF|URIM|mL40	mitochondrial ribosomal protein L40	protein-coding
94187	chr17	28554571	28554880	+	0	NA	intron (NM_033198, intron 11 of 11)	intron (NM_033198, intron 11 of 11)	-2097	NM_054035	9094		NM_005148	ENSG00000109103	UNC119	CORD24|HRG4|IMD13|POC7|POC7A	unc-119 lipid binding chaperone	protein-coding
53525	chr12	66929051	66929730	+	0	NA	intron (NM_001379351, intron 1 of 22)	L2a|LINE|L2	-125121	NM_001379348	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
34444	chr10	132423671	132424080	+	0	NA	Intergenic	L1MB7|LINE|L1	-21314	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
145702	chr20	45020401	45020980	+	0	NA	intron (NM_006282, intron 9 of 10)	MLT1H|LTR|ERVL-MaLR	54178	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
162185	chr3	46998221	46999100	+	0	NA	intron (NM_001365116, intron 21 of 52)	intron (NM_001365116, intron 21 of 52)	10670	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
143038	chr20	21166851	21167150	+	0	NA	intron (NM_001276389, intron 4 of 10)	MLT1E|LTR|ERVL-MaLR	40918	NM_001352435	55857		NM_018474	ENSG00000088970	KIZ	C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69	kizuna centrosomal protein	protein-coding
209226	chr7	75638821	75640300	+	0	NA	promoter-TSS (NM_001382444)	promoter-TSS (NM_001382444)	-318	NM_001382444	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
176796	chr4	102519821	102520600	+	0	NA	intron (NM_001382625, intron 2 of 24)	intron (NM_001382625, intron 2 of 24)	-17724	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
71737	chr15	20611651	20611950	+	0	NA	Intergenic	Intergenic	49451	NR_027411	729786		NR_027411	ENSG00000181984	GOLGA8CP	GOLGA8C	golgin A8 family member C, pseudogene	pseudo
208936	chr7	74093401	74095500	+	0	NA	intron (NM_001204426, intron 1 of 14)	intron (NM_001204426, intron 1 of 14)	1233	NM_001204426	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
171263	chr3	195865751	195865850	+	0	NA	intron (NM_005781, intron 14 of 14)	intron (NM_005781, intron 14 of 14)	-5396	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
125091	chr2	9707901	9708100	+	0	NA	Intergenic	L2b|LINE|L2	-77003	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
16702	chr1	155219751	155220500	+	0	NA	intron (NR_002188, intron 1 of 12)	MIRb|SINE|MIR	7409	NR_002188	2630		NR_002188	ENSG00000291137	GBA1LP	Beta-GC|GBA|GBAP|GBAP1|GC|GLUC	glucosylceramidase beta 1 like, pseudogene	pseudo
218878	chr8	60541471	60541830	+	0	NA	intron (NM_001242644, intron 1 of 6)	AluSq2|SINE|Alu	24663	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
27944	chr10	42077671	42077830	+	0	NA	Intergenic	Intergenic	290295	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
21897	chr1	207812601	207813080	+	0	NA	intron (NR_135299, intron 4 of 5)	intron (NR_135299, intron 4 of 5)	-5539	NR_026817	148696		NM_001039568		LOC148696	-	uncharacterized LOC148696	ncRNA
45166	chr11	117211901	117212100	+	0	NA	intron (NM_004716, intron 12 of 16)	intron (NM_004716, intron 12 of 16)	-10086	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
80642	chr16	2994071	2994380	+	0	NA	non-coding (NR_033861, exon 5 of 5)	non-coding (NR_033861, exon 5 of 5)	-4730	NR_110948	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
114850	chr19	13849021	13849550	+	0	NA	Intergenic	Intergenic	-6367	NR_036515	284454		NR_036515		MIR23AHG	Smyca	miR-23a/27a/24-2 cluster host gene	ncRNA
220389	chr8	100240351	100240650	+	0	NA	exon (NM_003114, exon 18 of 19)	exon (NM_003114, exon 18 of 19)	61693	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
11039	chr1	84987771	84987930	+	0	NA	intron (NM_001330647, intron 1 of 14)	L1PB1|LINE|L1	9263	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
15031	chr1	148354471	148354900	+	0	NA	Intergenic	Intergenic	7848	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
184649	chr5	107500271	107500630	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	170487	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
224887	chr9	32379281	32379680	+	0	NA	Intergenic	Intergenic	-5123	NM_001278352	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
10566	chr1	67226621	67226960	+	0	NA	intron (NM_144701, intron 7 of 10)	intron (NM_144701, intron 7 of 10)	60336	NM_144701	149233		NM_144701	ENSG00000162594	IL23R	PSORS7	interleukin 23 receptor	protein-coding
161537	chr3	42640801	42641200	+	0	NA	intron (NM_001349126, intron 15 of 18)	MIRb|SINE|MIR	-12697	NM_145166	92999		NM_145166	ENSG00000114853	ZBTB47	ZNF651	zinc finger and BTB domain containing 47	protein-coding
39840	chr11	62324851	62325250	+	0	NA	Intergenic	Intergenic	-12398	NM_025080	80150		NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase and isoaspartyl peptidase 1	protein-coding
189981	chr5	177451521	177451850	+	0	NA	intron (NM_001174102, intron 1 of 2)	intron (NM_001174102, intron 1 of 2)	3360	NM_001174102	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
178962	chr4	159232771	159232930	+	0	NA	intron (NM_001351725, intron 1 of 26)	L1MB4|LINE|L1	4367	NM_001351725	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
174494	chr4	39948821	39949080	+	0	NA	intron (NM_001100399, intron 2 of 32)	L1MB7|LINE|L1	28961	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
233101	chr9	137118421	137119230	+	0	NA	Intergenic	LTR13|LTR|ERVK	-4092	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
213757	chr7	140481301	140481880	+	0	NA	Intergenic	L1MA9|LINE|L1	-2021	NM_001145125	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
237418	chrX	119621171	119621650	+	0	NA	intron (NM_145799, intron 10 of 10)	MIRc|SINE|MIR	-14986	NR_163972	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
93946	chr17	21322621	21323800	+	0	NA	Intergenic	Intergenic	35174	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
173133	chr4	6639201	6639400	+	0	NA	promoter-TSS (NM_033296)	promoter-TSS (NM_033296)	-791	NM_033296	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
66401	chr14	61502761	61503830	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	66899	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
66895	chr14	65209301	65209500	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	12947	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
203348	chr6	170290401	170291070	+	0	NA	promoter-TSS (NM_001286379).2	promoter-TSS (NM_001286379).2	32	NM_001286379	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
5192	chr1	24953771	24954330	+	0	NA	intron (NM_001031680, intron 1 of 5)	AluJo|SINE|Alu	10960	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
129574	chr2	69977121	69977380	+	0	NA	intron (NR_033872, intron 9 of 10)	intron (NR_033872, intron 9 of 10)	-14985	NM_152792	151516		NM_152792	ENSG00000244617	ASPRV1	ADLI|MUNO|SASP|SASPase|Taps	aspartic peptidase retroviral like 1	protein-coding
109485	chr19	816471	817030	+	0	NA	intron (NM_001270366, intron 2 of 7)	(CACC)n|Simple_repeat|Simple_repeat	3166	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	mir-3187	microRNA 3187	ncRNA
28632	chr10	59362471	59362650	+	0	NA	promoter-TSS (NM_001001971)	promoter-TSS (NM_001001971)	-11	NM_198215	220965		NM_198215	ENSG00000148541	FAM13C	FAM13C1	family with sequence similarity 13 member C	protein-coding
214237	chr7	148872851	148873600	+	0	NA	intron (NM_001203248, intron 1 of 19)	AluSx|SINE|Alu	10260	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
235395	chrX	45134221	45134650	+	0	NA	Intergenic	Intergenic	66441	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
71620	chr14	106698701	106699170	+	0	NA	Intergenic	HERVK22-int|LTR|ERVK	152064	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
182946	chr5	71212271	71212430	+	0	NA	intron (NR_146391, intron 3 of 9)	THE1B|LTR|ERVL-MaLR	-4219	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
66860	chr14	64989051	64989350	+	0	NA	intron (NM_002028, intron 1 of 11)	AluJo|SINE|Alu	2305	NM_002028	2342		NM_002028	ENSG00000257365	FNTB	FPTB	farnesyltransferase, CAAX box, subunit beta	protein-coding
78559	chr15	93008821	93009480	+	0	NA	exon (NM_001271, exon 35 of 39)	exon (NM_001271, exon 35 of 39)	64006	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
237685	chrX	124360271	124360750	+	0	NA	intron (NM_002351, intron 1 of 3)	AluJr|SINE|Alu	13947	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
212533	chr7	128840851	128841400	+	0	NA	intron (NM_001458, intron 11 of 47)	intron (NM_001458, intron 11 of 47)	10719	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
220555	chr8	100712901	100713550	+	0	NA	intron (NM_002568, intron 4 of 14)	(CATTCAA)n|Simple_repeat|Simple_repeat	8863	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
17920	chr1	160253321	160253780	+	0	NA	intron (NR_028104, intron 1 of 12)	AluSx|SINE|Alu	-8199	NR_147618	100287049		NR_147618	ENSG00000228606	DCAF8-DT	-	DCAF8 divergent transcript	ncRNA
109618	chr19	952901	953650	+	0	NA	intron (NM_005224, intron 3 of 8)	intron (NM_005224, intron 3 of 8)	27240	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
123780	chr19	55112671	55112830	+	0	NA	exon (NM_001271618, exon 2 of 22)	exon (NM_001271618, exon 2 of 22)	4887	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
145506	chr20	43964301	43965350	+	0	NA	intron (NM_032883, intron 2 of 9)	MIRb|SINE|MIR	18929	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
226176	chr9	64711951	64712330	+	0	NA	Intergenic	TAR1|Satellite|telo	33226	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
1295	chr1	2338851	2339150	+	0	NA	intron (NM_024848, intron 10 of 13)	intron (NM_024848, intron 10 of 13)	13661	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
181413	chr5	40725841	40725950	+	0	NA	intron (NM_012382, intron 4 of 4)	AluYm1|SINE|Alu	30066	NM_012382	23548		NM_012382	ENSG00000113638	TTC33	OSRF	tetratricopeptide repeat domain 33	protein-coding
23942	chr1	235108101	235108830	+	0	NA	TTS (NM_014765)	TTS (NM_014765)	19472	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
126670	chr2	29189051	29189430	+	0	NA	Intergenic	Intergenic	34660	NM_001353765	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
16506	chr1	154877071	154877430	+	0	NA	Intergenic	Intergenic	-6969	NM_002249	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
176592	chr4	98927351	98927800	+	0	NA	intron (NM_001331017, intron 1 of 7)	AluSz|SINE|Alu	1558	NM_001130678	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
201369	chr6	144779251	144779350	+	0	NA	intron (NM_001375323, intron 10 of 24)	intron (NM_001375323, intron 10 of 24)	196152	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
76024	chr15	72101601	72101800	+	0	NA	intron (NM_006901, intron 1 of 41)	SVA_F|Retroposon|SVA	-12558	NM_001166340	123228		NM_145204	ENSG00000166192	SENP8	DEN1|NEDP1|PRSC2	SUMO peptidase family member, NEDD8 specific	protein-coding
131367	chr2	96202371	96202730	+	0	NA	intron (NM_001385622, intron 1 of 7)	intron (NM_001385622, intron 1 of 7)	-5866	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
41832	chr11	67081321	67082180	+	0	NA	Intergenic	Intergenic	24903	NM_014578	29984		NM_014578	ENSG00000173156	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
159335	chr3	13069271	13070480	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	3554	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
140485	chr2	233187801	233188450	+	0	NA	intron (NM_001017915, intron 21 of 26).2	intron (NM_001017915, intron 21 of 26).2	-63446	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
107715	chr18	49784701	49785230	+	0	NA	intron (NM_006111, intron 9 of 9)	intron (NM_006111, intron 9 of 9)	28568	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
98636	chr17	47812221	47812630	+	0	NA	intron (NM_145798, intron 16 of 22)	intron (NM_145798, intron 16 of 22)	9369	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
72137	chr15	29012951	29013350	+	0	NA	intron (NM_001353793, intron 2 of 12).2	intron (NM_001353793, intron 2 of 12).2	17623	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
182690	chr5	68126521	68126780	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-63226	NR_105003	102467655		NR_105003	ENSG00000253787	LINC02219	-	long intergenic non-protein coding RNA 2219	ncRNA
86777	chr16	67723571	67724100	+	0	NA	3' UTR (NM_020850, exon 14 of 14)	3' UTR (NM_020850, exon 14 of 14)	-4519	NM_001243650	81577		NM_030819	ENSG00000141098	GFOD2	-	Gfo/Idh/MocA-like oxidoreductase domain containing 2	protein-coding
124354	chr19	58345551	58346150	+	0	NA	3' UTR (NM_130786, exon 8 of 8)	3' UTR (NM_130786, exon 8 of 8)	-6120	NR_015380	503538		NR_015380	ENSG00000268895	A1BG-AS1	A1BG-AS|A1BGAS|NCRNA00181	A1BG antisense RNA 1	ncRNA
185408	chr5	129125871	129126730	+	0	NA	Intergenic	Intergenic	28612	NR_039776	100616175		NR_039776	ENSG00000264563	MIR4633	-	microRNA 4633	ncRNA
8527	chr1	41004871	41005030	+	0	NA	intron (NR_125440, intron 12 of 17)	AluSz6|SINE|Alu	-9640	NR_037868	100507178		NR_037868	ENSG00000281207	SLFNL1-AS1	-	SLFNL1 antisense RNA 1	ncRNA
114301	chr19	11798201	11799100	+	0	NA	5' UTR (NM_152356, exon 1 of 3)	5' UTR (NM_152356, exon 1 of 3)	127	NM_152356	126069		NM_152356	ENSG00000177599	ZNF491	-	zinc finger protein 491	protein-coding
67130	chr14	68637721	68638180	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	-9163	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
188483	chr5	154769451	154769800	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	12471	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
143292	chr20	25291371	25291530	+	0	NA	intron (NM_002862, intron 16 of 19)	intron (NM_002862, intron 16 of 19)	43365	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
157979	chr22	49827601	49828930	+	0	NA	promoter-TSS (NM_001304808)	promoter-TSS (NM_001304808)	-392	NM_001304808	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
190048	chr5	177551771	177552130	+	0	NA	intron (NM_001190946, intron 1 of 8)	intron (NM_001190946, intron 1 of 8)	2145	NM_001366498	54540		NM_019057	ENSG00000146067	FAM193B	IRIZIO	family with sequence similarity 193 member B	protein-coding
10762	chr1	77197221	77197480	+	0	NA	intron (NM_005482, intron 3 of 10)	intron (NM_005482, intron 3 of 10)	22080	NM_005482	10026		NM_005482	ENSG00000142892	PIGK	GPI8|NEDHCAS	phosphatidylinositol glycan anchor biosynthesis class K	protein-coding
114034	chr19	10939751	10940650	+	0	NA	Intergenic	MER101|LTR|ERV1	11389	NM_138358	90580		NM_138358	ENSG00000142444	TIMM29	C19orf52|TIM29	translocase of inner mitochondrial membrane 29	protein-coding
140618	chr2	233426751	233426850	+	0	NA	intron (NM_001377259, intron 1 of 27)	L1ME3A|LINE|L1	7588	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
218600	chr8	55989151	55990030	+	0	NA	intron (NM_002350, intron 10 of 12)	intron (NM_002350, intron 10 of 12)	84311	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
210161	chr7	98280801	98282230	+	0	NA	promoter-TSS (NM_015379)	promoter-TSS (NM_015379)	-171	NM_001159491	25798		NM_015379	ENSG00000164713	BRI3	I3	brain protein I3	protein-coding
207181	chr7	43615401	43616350	+	0	NA	intron (NR_135582, intron 6 of 6)	L2a|LINE|L2	32767	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
230336	chr9	128002501	128002700	+	0	NA	Intergenic	AluSx|SINE|Alu	-21611	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
43598	chr11	83164301	83165000	+	0	NA	intron (NM_015885, intron 4 of 15)	AluJr|SINE|Alu	7519	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
118106	chr19	34477801	34478200	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-3758	NM_001080436	126374		NM_001080436	ENSG00000142279	WTIP	-	WT1 interacting protein	protein-coding
173716	chr4	15781551	15781930	+	0	NA	intron (NR_132660, intron 1 of 6)	MLT2D|LTR|ERVL	3412	NR_132660	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
143127	chr20	23530971	23531330	+	0	NA	intron (NR_001279, intron 2 of 3)	Tigger1|DNA|TcMar-Tigger	12004	NR_001279	164380		NR_001279	ENSG00000290388	CST13P	CSTT|CTES6	cystatin 13, pseudogene	pseudo
8825	chr1	42960521	42961280	+	0	NA	intron (NR_033967, intron 1 of 3)	intron (NR_033967, intron 1 of 3)	1851	NR_033967	440584		NR_033967	ENSG00000227533	SLC2A1-DT	SLC2A1-AS1	SLC2A1 divergent transcript	ncRNA
132200	chr2	102002771	102003530	+	0	NA	intron (NR_048564, intron 1 of 8)	(TCTGTG)n|Simple_repeat|Simple_repeat	4189	NR_048564	7850		NM_004633	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor type 2	protein-coding
224702	chr9	21392051	21393130	+	0	NA	Intergenic	Intergenic	-7192	NM_000605	3440		NM_000605	ENSG00000188379	IFNA2	IFN-alpha-2|IFN-alphaA|IFNA|IFNA2B|leIF A	interferon alpha 2	protein-coding
201063	chr6	142561621	142562130	+	0	NA	intron (NR_027312, intron 1 of 2)	intron (NR_027312, intron 1 of 2)	75961	NR_027311	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
82745	chr16	21404401	21405150	+	0	NA	exon (NM_130464, exon 8 of 13)	exon (NM_130464, exon 8 of 13)	20603	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
142489	chr20	4685951	4686800	+	0	NA	promoter-TSS (NM_001080123)	promoter-TSS (NM_001080123)	-81	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
179026	chr4	165114171	165114530	+	0	NA	Intergenic	AluY|SINE|Alu	-1490	NM_001100389	201931		NM_152681	ENSG00000170088	TMEM192	-	transmembrane protein 192	protein-coding
166376	chr3	113211921	113212380	+	0	NA	promoter-TSS (NM_001301861)	promoter-TSS (NM_001301861)	34	NM_001301861	91653		NM_033254	ENSG00000144857	BOC	Boi|CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
128987	chr2	64728071	64728850	+	0	NA	Intergenic	Intergenic	-74547	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
138064	chr2	201661401	201661600	+	0	NA	intron (NM_033066, intron 14 of 21)	intron (NM_033066, intron 14 of 21)	-17997	NM_001044385	65062		NM_152388	ENSG00000155755	TMEM237	ALS2CR4|JBTS14	transmembrane protein 237	protein-coding
104511	chr17	81231351	81231750	+	0	NA	intron (NM_144679, intron 9 of 11)	intron (NM_144679, intron 9 of 11)	2843	NR_135654	105371925		NR_135654		LOC105371925	-	uncharacterized LOC105371925	ncRNA
218950	chr8	60999061	60999880	+	0	NA	Intergenic	MIRc|SINE|MIR	-31722	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
54106	chr12	76124451	76124900	+	0	NA	Intergenic	AluJb|SINE|Alu	-39990	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
214010	chr7	143249071	143249230	+	0	NA	intron (NM_001363538, intron 8 of 11)	L1M3b|LINE|L1	-14279	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
63842	chr14	21512471	21513000	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1395	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
114978	chr19	14029101	14029780	+	0	NA	intron (NM_080864, intron 1 of 1)	AluSx|SINE|Alu	1292	NM_080864	117579		NM_080864	ENSG00000171136	RLN3	H3|RXN3|ZINS4|insl7	relaxin 3	protein-coding
11487	chr1	90725601	90726150	+	0	NA	Intergenic	CpG	-8573	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
121917	chr19	48420171	48420330	+	0	NA	intron (NM_000836, intron 10 of 13)	AluY|SINE|Alu	-25733	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
38268	chr11	39367371	39367930	+	0	NA	Intergenic	Intergenic	718792	NR_120553	101928536		NR_120553	ENSG00000254562	LINC01493	-	long intergenic non-protein coding RNA 1493	ncRNA
145887	chr20	45951071	45952980	+	0	NA	intron (NM_022095, intron 20 of 27)	L2b|LINE|L2	17342	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
39134	chr11	48346101	48346580	+	0	NA	Intergenic	L1PA4|LINE|L1	20148	NM_001348223	79346		NM_001348223	ENSG00000176540	OR4C5	OR4C5P|OR4C5Q	olfactory receptor family 4 subfamily C member 5	protein-coding
3304	chr1	15352551	15353280	+	0	NA	exon (NM_052929, exon 19 of 31)	exon (NM_052929, exon 19 of 31)	-9032	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
104836	chr17	81830471	81830630	+	0	NA	intron (NM_001288798, intron 1 of 6)	AluSq2|SINE|Alu	2741	NM_001288798	348262		NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
196459	chr6	43514421	43515380	+	0	NA	intron (NM_015388, intron 3 of 8)	L2c|LINE|L2	2026	NM_015388	25844		NM_015388	ENSG00000137207	YIPF3	C6orf109|FinGER3|KLIP1|YIPFbeta2|Yip5b|dJ337H4.3	Yip1 domain family member 3	protein-coding
206538	chr7	35190171	35190330	+	0	NA	Intergenic	AluJr4|SINE|Alu	-4088	NR_002833	554236		NM_001024657	ENSG00000291133	DPY19L2P1	-	DPY19L2 pseudogene 1	pseudo
58463	chr12	132133871	132134450	+	0	NA	Intergenic	Intergenic	10159	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
104497	chr17	81165301	81165500	+	0	NA	promoter-TSS (NM_001354639)	promoter-TSS (NM_001354639)	-107	NM_001354639	388428		NM_207389	ENSG00000225180	PVALEF	AATK-AS1	parvalbumin like EF-hand containing	protein-coding
234499	chrX	19211851	19212300	+	0	NA	Intergenic	LTR78|LTR|ERV1	-89438	NM_001184833	10149		NM_005756	ENSG00000173698	ADGRG2	CBAVDX|EDDM6|GPR64|HE6|TM7LN2	adhesion G protein-coupled receptor G2	protein-coding
88023	chr16	81075471	81075730	+	0	NA	intron (NM_152337, intron 1 of 3)	AluSz|SINE|Alu	1638	NM_152337	123775		NM_152337	ENSG00000166455	C16orf46	-	chromosome 16 open reading frame 46	protein-coding
26960	chr10	26622121	26622780	+	0	NA	Intergenic	Intergenic	-20658	NR_026794	731789		NR_026794		FAM238B	LINC00202-2	family with sequence similarity 238 member B	ncRNA
85006	chr16	31490821	31491280	+	0	NA	TTS (NM_003041)	TTS (NM_003041)	7927	NR_130783	6524		NM_003041	ENSG00000140675	SLC5A2	SGLT2	solute carrier family 5 member 2	protein-coding
75579	chr15	67077701	67078100	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	12298	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
71571	chr14	106419001	106419200	+	0	NA	Intergenic	L1M3de|LINE|L1	-63339	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
44847	chr11	114111221	114111480	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	48139	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
132081	chr2	101298971	101299530	+	0	NA	intron (NM_173647, intron 1 of 6)	UCON55|DNA|TcMar-Tigger	9451	NM_173647	284996		NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
74546	chr15	60517001	60517200	+	0	NA	intron (NM_134260, intron 4 of 11)	(TT)n|Simple_repeat|Simple_repeat	37922	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
183275	chr5	76477151	76477650	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-70009	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
32379	chr10	102408601	102409720	+	0	NA	non-coding (NR_073110, exon 1 of 8)	non-coding (NR_073110, exon 1 of 8)	117	NR_073110	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
84411	chr16	30352401	30352800	+	0	NA	3' UTR (NM_001243646, exon 6 of 6)	3' UTR (NM_001243646, exon 6 of 6)	2334	NM_001243646	10421		NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
26995	chr10	26793971	26794330	+	0	NA	intron (NR_145410, intron 2 of 11)	AluSz|SINE|Alu	66808	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
112667	chr19	6953251	6953550	+	0	NA	intron (NR_024075, intron 15 of 15)	intron (NR_024075, intron 15 of 15)	37446	NR_024075	326342		NM_001080498		ADGRE4P	EMR4|EMR4P|FIRE|GPR127|PGR16	adhesion G protein-coupled receptor E4, pseudogene	pseudo
222559	chr8	140611971	140612330	+	0	NA	intron (NM_012154, intron 1 of 18)	AluYk2|SINE|Alu	23483	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
83600	chr16	28183421	28183900	+	0	NA	intron (NM_015171, intron 1 of 23)	MIRc|SINE|MIR	28305	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
108269	chr18	63268071	63268530	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	51469	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
238267	chrX	148500451	148501650	+	0	NA	5' UTR (NM_001169124, exon 1 of 20)	5' UTR (NM_001169124, exon 1 of 20)	433	NM_001169125	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
3440	chr1	15883871	15884030	+	0	NA	intron (NM_015001, intron 3 of 14)	AluYf1|SINE|Alu	-35803	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
48898	chr12	12544051	12544350	+	0	NA	intron (NM_030640, intron 1 of 6)	L1ME3A|LINE|L1	18663	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
76394	chr15	74625251	74625750	+	0	NA	intron (NM_001130028, intron 6 of 12)	intron (NM_001130028, intron 6 of 12)	9664	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
149519	chr21	32886171	32887180	+	0	NA	Intergenic	Intergenic	-72213	NR_135522	102724502		NR_135522	ENSG00000228961	LINC01690	-	long intergenic non-protein coding RNA 1690	ncRNA
68054	chr14	75249351	75250430	+	0	NA	Intergenic	Intergenic	-28938	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
94681	chr17	30507571	30507930	+	0	NA	intron (NM_004871, intron 6 of 8)	Tigger1|DNA|TcMar-Tigger	30342	NM_001007024	9527		NM_004871	ENSG00000108587	GOSR1	GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28	golgi SNAP receptor complex member 1	protein-coding
90355	chr17	1205751	1206000	+	0	NA	intron (NM_001322841, intron 1 of 22)	AluSc|SINE|Alu	-18603	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
230760	chr9	128899561	128900480	+	0	NA	intron (NM_019594, intron 2 of 3)	intron (NM_019594, intron 2 of 3)	-17497	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
209142	chr7	75104951	75105250	+	0	NA	intron (NM_001368302, intron 1 of 15)	AluJb|SINE|Alu	11068	NM_001368302	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
2790	chr1	10904701	10905330	+	0	NA	Intergenic	Intergenic	61672	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
39515	chr11	61070771	61072080	+	0	NA	Intergenic	Intergenic	-22538	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
185064	chr5	116086871	116087030	+	0	NA	intron (NM_001308080, intron 1 of 6)	AluJb|SINE|Alu	1488	NM_001308080	51397		NM_016144	ENSG00000145781	COMMD10	PTD002	COMM domain containing 10	protein-coding
157946	chr22	49797371	49798080	+	0	NA	intron (NR_146335, intron 7 of 13)	intron (NR_146335, intron 7 of 13)	26606	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
60785	chr13	45309221	45310100	+	0	NA	Intergenic	Intergenic	26787	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
204206	chr7	2509701	2510030	+	0	NA	Intergenic	Intergenic	-2664	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
155234	chr22	37929321	37929780	+	0	NA	intron (NM_033386, intron 9 of 15)	intron (NM_033386, intron 9 of 15)	23253	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
105430	chr17	82886001	82886480	+	0	NA	intron (NM_005993, intron 15 of 38)	intron (NM_005993, intron 15 of 38)	-46218	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
226092	chr9	62815171	62815330	+	0	NA	Intergenic	L1M1|LINE|L1	13785	NR_121647	103352539		NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
32177	chr10	101571951	101572050	+	0	NA	Intergenic	Intergenic	16257	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
140992	chr2	238067671	238068280	+	0	NA	intron (NM_016510, intron 2 of 11)	intron (NM_016510, intron 2 of 11)	6974	NM_016510	51540		NM_016510	ENSG00000132330	SCLY	SCL|hSCL	selenocysteine lyase	protein-coding
68542	chr14	89303651	89304350	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	113233	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
123852	chr19	55247021	55247280	+	0	NA	intron (NM_014931, intron 1 of 23)	intron (NM_014931, intron 1 of 23)	-1900	NR_106861	102466739		NR_106861	ENSG00000278264	MIR6803	hsa-mir-6803	microRNA 6803	ncRNA
191551	chr6	11655571	11656000	+	0	NA	Intergenic	Intergenic	118036	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
179277	chr4	176332951	176333300	+	0	NA	TTS (NM_021928)	TTS (NM_021928)	13159	NM_021928	60559		NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22|SPC22/23|SPC23|SPC3|YLR066W	signal peptidase complex subunit 3	protein-coding
181295	chr5	39948821	39949280	+	0	NA	Intergenic	Intergenic	-103241	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
162202	chr3	47010501	47010700	+	0	NA	promoter-TSS (NR_024046)	promoter-TSS (NR_024046)	-942	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
227759	chr9	93107101	93107650	+	0	NA	intron (NR_160511, intron 1 of 4)	intron (NR_160511, intron 1 of 4)	11158	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
171328	chr3	195988401	195989050	+	0	NA	intron (NR_003264, intron 1 of 16)	intron (NR_003264, intron 1 of 16)	1554	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
230491	chr9	128243501	128243930	+	0	NA	intron (NM_001374269, intron 15 of 21)	intron (NM_001374269, intron 15 of 21)	1115	NR_029619	406978		NR_029619	ENSG00000207581	MIR199B	MIRN199B|mir-199b	microRNA 199b	ncRNA
48191	chr12	8034771	8036000	+	0	NA	intron (NM_018416, intron 1 of 10)	intron (NM_018416, intron 1 of 10)	2669	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
67721	chr14	73476151	73476450	+	0	NA	Intergenic	L2c|LINE|L2	-12658	NR_135251	101928143		NR_135251	ENSG00000284930	LOC101928143	-	uncharacterized LOC101928143	ncRNA
209099	chr7	74882601	74883180	+	0	NA	non-coding (NR_040584, exon 8 of 8)	non-coding (NR_040584, exon 8 of 8)	7722	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
84150	chr16	29743721	29744590	+	0	NA	3' UTR (NM_175900, exon 2 of 2)	3' UTR (NM_175900, exon 2 of 2)	1835	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
139097	chr2	218891071	218891230	+	0	NA	intron (NM_025216, intron 3 of 3)	MIR|SINE|MIR	10298	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
226149	chr9	63705451	63705880	+	0	NA	Intergenic	GSATII|Satellite|centr	-107276	NR_146625	203274		NR_146625		LINC00537	-	long intergenic non-protein coding RNA 537	ncRNA
232830	chr9	136739371	136739730	+	0	NA	exon (NM_001001712, exon 6 of 6)	exon (NM_001001712, exon 6 of 6)	3390	NR_160514	414332		NM_001001712	ENSG00000187922	LCN10	-	lipocalin 10	protein-coding
166043	chr3	108603621	108604330	+	0	NA	intron (NM_014648, intron 1 of 32)	intron (NM_014648, intron 1 of 32)	14253	NM_014648	9666		NM_014648	ENSG00000198919	DZIP3	PPP1R66|UURF2|hRUL138	DAZ interacting zinc finger protein 3	protein-coding
101101	chr17	64977421	64977930	+	0	NA	Intergenic	L2c|LINE|L2	-2090	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
114586	chr19	12935151	12935580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1654	NM_004461	2193		NM_004461	ENSG00000179115	FARSA	CML33|FARSL|FARSLA|FRSA|PheHA|RILDBC2	phenylalanyl-tRNA synthetase subunit alpha	protein-coding
33192	chr10	113563421	113563790	+	0	NA	intron (NM_004132, intron 1 of 12)	intron (NM_004132, intron 1 of 12)	10552	NM_004132	3026		NM_004132	ENSG00000148702	HABP2	FSAP|HABP|HGFAL|NMTC5|PHBP	hyaluronan binding protein 2	protein-coding
21698	chr1	206731771	206732030	+	0	NA	exon (NM_004759, exon 9 of 10)	exon (NM_004759, exon 9 of 10)	38703	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
112305	chr19	5880401	5880600	+	0	NA	Intergenic	Intergenic	-9960	NM_002034	2527		NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding
216888	chr8	22670001	22670800	+	0	NA	Intergenic	Intergenic	-1252	NR_156436	55909		NM_018688	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
126999	chr2	36802371	36802530	+	0	NA	intron (NM_053276, intron 13 of 15)	intron (NM_053276, intron 13 of 15)	105743	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
100519	chr17	62423551	62424530	+	0	NA	intron (NM_181725, intron 1 of 8)	CpG	143	NM_181725	339175		NM_181725	ENSG00000087995	METTL2A	METTL2	methyltransferase 2A, tRNA N3-cytidine	protein-coding
230517	chr9	128320001	128320200	+	0	NA	intron (NM_001329861, intron 1 of 6)	AluY|SINE|Alu	2118	NM_001329862	26995		NM_015679	ENSG00000167112	TRUB2	CLONE24922	TruB pseudouridine synthase family member 2	protein-coding
110003	chr19	1427221	1427930	+	0	NA	intron (NM_170711, intron 7 of 12)	intron (NM_170711, intron 7 of 12)	-10821	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
163539	chr3	51673551	51674550	+	0	NA	intron (NM_001129884, intron 2 of 5)	intron (NM_001129884, intron 2 of 5)	2423	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
239294	chrY	14348651	14348950	+	0	NA	Intergenic	Intergenic	-173816	NM_001365591	22829		NM_014893	ENSG00000165246	NLGN4Y	HNL4Y	neuroligin 4 Y-linked	protein-coding
147691	chr20	62316721	62317800	+	0	NA	intron (NM_005560, intron 55 of 79)	intron (NM_005560, intron 55 of 79)	14263	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
8877	chr1	43575071	43575230	+	0	NA	intron (NM_001329139, intron 6 of 32)	intron (NM_001329139, intron 6 of 32)	44267	NM_002840	5792		NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase receptor type F	protein-coding
155380	chr22	38308471	38309700	+	0	NA	intron (NM_152221, intron 2 of 10)	MER20|DNA|hAT-Charlie	8348	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
182979	chr5	71600901	71602010	+	0	NA	intron (NM_022132, intron 4 of 16)	Charlie16a|DNA|hAT-Charlie	14115	NM_022132	64087		NM_022132	ENSG00000131844	MCCC2	MCCB|MCCCbeta	methylcrotonyl-CoA carboxylase subunit 2	protein-coding
47573	chr12	4455951	4456050	+	0	NA	Intergenic	AluSz|SINE|Alu	-10386	NM_020996	2251		NM_020996	ENSG00000111241	FGF6	HBGF-6|HST2	fibroblast growth factor 6	protein-coding
55050	chr12	96420901	96421600	+	0	NA	Intergenic	MER51B|LTR|ERV1	-20811	NM_001170464	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
66529	chr14	61753751	61754250	+	0	NA	Intergenic	L1MC5|LINE|L1	-2903	NR_144368	105370526		NR_144368	ENSG00000258667	HIF1A-AS3	HIFAL	HIF1A antisense RNA 3	ncRNA
170055	chr3	182802601	182803000	+	0	NA	intron (NM_014616, intron 1 of 29)	intron (NM_014616, intron 1 of 29)	9296	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
53656	chr12	68364921	68366380	+	0	NA	Intergenic	Intergenic	-33236	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
217116	chr8	25000801	25001000	+	0	NA	Intergenic	CpG	-44288	NM_006158	4747		NM_006158	ENSG00000277586	NEFL	CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110	neurofilament light chain	protein-coding
89799	chr16	89509801	89510030	+	0	NA	intron (NM_199367, intron 1 of 9)	FRAM|SINE|Alu	1512	NM_003119	6687		NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7 matrix AAA peptidase subunit, paraplegin	protein-coding
161425	chr3	41824621	41824750	+	0	NA	intron (NM_017886, intron 18 of 36)	L1PA4|LINE|L1	137418	NM_017886	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
145381	chr20	41195501	41195900	+	0	NA	intron (NM_001384324, intron 4 of 4)	AluSq2|SINE|Alu	26677	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
168628	chr3	149717401	149717650	+	0	NA	5' UTR (NM_001348362, exon 3 of 10)	5' UTR (NM_001348362, exon 3 of 10)	7263	NM_001348362	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
109992	chr19	1418601	1418800	+	0	NA	exon (NM_001352034, exon 4 of 12)	exon (NM_001352034, exon 4 of 12)	11114	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
99310	chr17	49819001	49819600	+	0	NA	intron (NM_001199155, intron 8 of 13)	intron (NM_001199155, intron 8 of 13)	-26586	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
157690	chr22	46356551	46356650	+	0	NA	intron (NR_104240, intron 10 of 10)	intron (NR_104240, intron 10 of 10)	20886	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
15945	chr1	151829801	151830000	+	0	NA	intron (NM_005060, intron 1 of 10)	L2c|LINE|L2	1902	NM_005060	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
117610	chr19	22789751	22789850	+	0	NA	Intergenic	AluYc|SINE|Alu	-5649	NM_001080409	7652		NM_001080409	ENSG00000213973	ZNF99	C19orf9|F8281	zinc finger protein 99	protein-coding
214169	chr7	144821251	144821350	+	0	NA	intron (NR_146934, intron 1 of 6)	intron (NR_146934, intron 1 of 6)	14640	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
30550	chr10	79696951	79697480	+	0	NA	intron (NR_120613, intron 6 of 6)	intron (NR_120613, intron 6 of 6)	-6012	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
67883	chr14	74302801	74303850	+	0	NA	promoter-TSS (NM_001353598)	promoter-TSS (NM_001353598)	-391	NM_001353595	5826		NM_005050	ENSG00000119688	ABCD4	ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L	ATP binding cassette subfamily D member 4	protein-coding
172353	chr4	1722371	1722530	+	0	NA	intron (NM_006342, intron 1 of 15)	intron (NM_006342, intron 1 of 15)	929	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
83479	chr16	27397351	27397850	+	0	NA	Intergenic	L1MB8|LINE|L1	-4574	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
13424	chr1	114218871	114219030	+	0	NA	Intergenic	Intergenic	-65081	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
35768	chr11	2158171	2158330	+	0	NA	intron (NM_001042376, intron 2 of 4)	intron (NM_001042376, intron 2 of 4)	2959	NM_001185097	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
86257	chr16	58463301	58464300	+	0	NA	promoter-TSS (NM_020465)	promoter-TSS (NM_020465)	85	NM_001378339	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
34483	chr10	132517371	132517530	+	0	NA	intron (NR_158224, intron 2 of 3)	intron (NR_158224, intron 2 of 3)	19473	NR_158224	107984282		NR_158224		LOC107984282	-	uncharacterized LOC107984282	ncRNA
88393	chr16	84620401	84620950	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-2597	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
102515	chr17	75788621	75788880	+	0	NA	intron (NM_001080419, intron 1 of 15)	AluJb|SINE|Alu	3911	NR_038131	85451		NM_001080419	ENSG00000132478	UNK	UNKEMPT|ZC3H5|ZC3HDC5	unk zinc finger	protein-coding
238139	chrX	136715471	136716030	+	0	NA	intron (NM_004840, intron 6 of 21)	L1MCa|LINE|L1	52065	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
110309	chr19	1843571	1844080	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	4658	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
108137	chr18	62505421	62506700	+	0	NA	Intergenic	Intergenic	-16965	NM_017742	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
125873	chr2	24550401	24550600	+	0	NA	intron (NM_001362954, intron 1 of 23)	THE1B|LTR|ERVL-MaLR	-33977	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
27983	chr10	42940151	42940290	+	0	NA	Intergenic	Intergenic	41287	NR_126352	104266963		NR_126352	ENSG00000229630	LINC01264	-	long intergenic non-protein coding RNA 1264	ncRNA
227931	chr9	94316171	94316880	+	0	NA	Intergenic	Intergenic	12119	NM_017561	54754		NM_017561	ENSG00000130950	NUTM2F	FAM22F|NUTMF	NUT family member 2F	protein-coding
198362	chr6	105402171	105403770	+	0	NA	5' UTR (NM_002726, exon 1 of 15)	5' UTR (NM_002726, exon 1 of 15)	112	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
141272	chr2	240021471	240021830	+	0	NA	intron (NR_136157, intron 1 of 7)	intron (NR_136157, intron 1 of 7)	3692	NR_136158	4705		NM_004544	ENSG00000130414	NDUFA10	CI-42KD|CI-42k|MC1DN22	NADH:ubiquinone oxidoreductase subunit A10	protein-coding
195125	chr6	35670401	35670650	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluSx1|SINE|Alu	-5736	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
50039	chr12	43882371	43882800	+	0	NA	intron (NM_001286213, intron 2 of 6)	intron (NM_001286213, intron 2 of 6)	46504	NM_032256	84216		NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
180975	chr5	35782071	35782230	+	0	NA	intron (NM_024867, intron 30 of 36)	intron (NM_024867, intron 30 of 36)	-74741	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
131861	chr2	98700821	98701280	+	0	NA	intron (NM_012214, intron 2 of 15)	Charlie1b|DNA|hAT-Charlie	30082	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
126124	chr2	26054921	26055530	+	0	NA	intron (NM_016131, intron 1 of 5)	intron (NM_016131, intron 1 of 5)	21141	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
52162	chr12	54287471	54287900	+	0	NA	TTS (NM_002136)	TTS (NM_002136)	6959	NR_135167	3178		NM_002136	ENSG00000135486	HNRNPA1	ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|MPD3|UP 1|hnRNP A1|hnRNP-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding
193885	chr6	31587921	31588600	+	0	NA	TTS (NM_001145466).8	TTS (NM_001145466).8	1060	NM_205840	7940		NM_007161	ENSG00000204482	LST1	B144|D6S49E|LST-1	leukocyte specific transcript 1	protein-coding
172059	chr4	1022401	1022900	+	0	NA	intron (NM_001370296, intron 3 of 6)	intron (NM_001370296, intron 3 of 6)	10186	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
148973	chr21	13947151	13947250	+	0	NA	intron (NR_027270, intron 4 of 5)	(GTT)n|Simple_repeat|Simple_repeat	-13321	NR_146644	110091776		NR_146644		LOC110091776	-	ankyrin repeat domain 18B pseudogene	pseudo
91919	chr17	7318451	7319150	+	0	NA	intron (NM_032442, intron 22 of 28)	intron (NM_032442, intron 22 of 28)	-3440	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
95911	chr17	38905921	38906180	+	0	NA	intron (NM_006148, intron 4 of 6)	AluJr|SINE|Alu	-8929	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
51566	chr12	52602671	52602830	+	0	NA	Intergenic	Intergenic	-1287	NM_080747	140807		NM_080747	ENSG00000170486	KRT72	CK-72|K6IRS2|K6irs|K72|KRT6|KRT6IRS2	keratin 72	protein-coding
73859	chr15	50183551	50183930	+	0	NA	intron (NM_003645, intron 1 of 9)	intron (NM_003645, intron 1 of 9)	1544	NM_003645	11001		NM_003645	ENSG00000140284	SLC27A2	ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1	solute carrier family 27 member 2	protein-coding
72339	chr15	31322171	31322530	+	0	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-4485	NM_001302461	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
58070	chr12	124545421	124546550	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	21627	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
31531	chr10	96846021	96846280	+	0	NA	intron (NM_032440, intron 2 of 7)	AluSz|SINE|Alu	13205	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
35539	chr11	1584601	1585750	+	0	NA	exon (NM_001005922, exon 1 of 1).3	exon (NM_001005922, exon 1 of 1).3	108	NM_001005922	387264		NM_001005922	ENSG00000205869	KRTAP5-1	KRN1L|KRTAP5.1	keratin associated protein 5-1	protein-coding
114807	chr19	13797821	13798280	+	0	NA	intron (NM_023072, intron 1 of 12)	MER30|DNA|hAT-Charlie	2607	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
218422	chr8	47680351	47680850	+	0	NA	intron (NR_148204, intron 11 of 19)	intron (NR_148204, intron 11 of 19)	20936	NM_001352960	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
217634	chr8	30059051	30059250	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	23914	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
8575	chr1	41371371	41371530	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	4219	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
208705	chr7	73295701	73296430	+	0	NA	Intergenic	Intergenic	12761	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
20402	chr1	198182271	198182800	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	25537	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
202883	chr6	159975301	159975580	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	6358	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
205414	chr7	16642921	16643280	+	0	NA	intron (NM_020319, intron 1 of 9)	MIR|SINE|MIR	2654	NM_020319	57037		NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
215290	chr7	157274721	157275080	+	0	NA	Intergenic	AluY|SINE|Alu	-62104	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
131955	chr2	99403621	99404080	+	0	NA	intron (NM_001321460, intron 19 of 23)	intron (NM_001321460, intron 19 of 23)	66461	NM_015904	9669		NM_015904	ENSG00000158417	EIF5B	IF2	eukaryotic translation initiation factor 5B	protein-coding
229526	chr9	122819721	122820580	+	0	NA	exon (NM_005388, exon 4 of 4)	exon (NM_005388, exon 4 of 4)	8438	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
79174	chr16	296901	297100	+	0	NA	intron (NM_181050, intron 7 of 9)	intron (NM_181050, intron 7 of 9)	13836	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
46950	chr11	134413771	134413930	+	0	NA	Intergenic	Intergenic	-1608	NM_001367973	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
54939	chr12	96223851	96224150	+	0	NA	intron (NM_005230, intron 2 of 4)	intron (NM_005230, intron 2 of 4)	29625	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
59685	chr13	29369001	29369250	+	0	NA	intron (NM_001384606, intron 7 of 14)	intron (NM_001384606, intron 7 of 14)	-59535	NM_015233	23281		NM_015233	ENSG00000132938	MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated scaffold protein 2	protein-coding
220632	chr8	100942051	100943030	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	8031	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
135483	chr2	161426371	161426530	+	0	NA	TTS (NM_006593)	TTS (NM_006593)	10153	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
132814	chr2	110556621	110557480	+	0	NA	intron (NM_032260, intron 8 of 19).2	AluSc|SINE|Alu	19850	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
166349	chr3	112976901	112977500	+	0	NA	Intergenic	Intergenic	-2097	NM_170780	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
28415	chr10	47763821	47764080	+	0	NA	promoter-TSS (NM_001370186)	promoter-TSS (NM_001370186)	-358	NM_001370185	102724488		NM_001370182	ENSG00000277758	SYT15B	-	synaptotagmin 15B	protein-coding
134085	chr2	131527401	131530100	+	0	NA	intron (NM_001349043, intron 1 of 7)	AluY|SINE|Alu	862	NM_138770	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
65074	chr14	39423601	39424180	+	0	NA	intron (NM_203301, intron 1 of 3)	L1PA16|LINE|L1	8610	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
138408	chr2	204988951	204989050	+	0	NA	intron (NM_205863, intron 3 of 21)	L2a|LINE|L2	443525	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
209393	chr7	76320301	76320930	+	0	NA	Intergenic	AluY|SINE|Alu	17942	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
36145	chr11	3134101	3134500	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	31010	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
217733	chr8	30655801	30656300	+	0	NA	intron (NM_002095, intron 1 of 7)	AluSz|SINE|Alu	1568	NM_001348353	2961		NM_002095	ENSG00000197265	GTF2E2	FE|TF2E2|TFIIE-B|TTD6	general transcription factor IIE subunit 2	protein-coding
131605	chr2	96877771	96877930	+	0	NA	intron (NM_016490, intron 4 of 4)	intron (NM_016490, intron 4 of 4)	-7770	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
37002	chr11	11987521	11988000	+	0	NA	intron (NM_001018057, intron 3 of 6)	intron (NM_001018057, intron 3 of 6)	20879	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
177157	chr4	108138271	108138630	+	0	NA	intron (NM_016269, intron 3 of 11)	MIR|SINE|MIR	28347	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
90406	chr17	1312201	1312800	+	0	NA	Intergenic	Intergenic	32838	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
6780	chr1	30759751	30761180	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2691	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
54288	chr12	89273571	89273730	+	0	NA	Intergenic	MIRb|SINE|MIR	78851	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
154672	chr22	36359071	36360200	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	28332	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
176747	chr4	101529001	101529200	+	0	NA	Intergenic	MIRc|SINE|MIR	181323	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
191476	chr6	11171771	11171930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-60125	NM_207582	405754		NM_207582	ENSG00000244476	ERVFRD-1	ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD	endogenous retrovirus group FRD member 1, envelope	protein-coding
8160	chr1	39491001	39492530	+	0	NA	5' UTR (NM_181809, exon 1 of 7)	5' UTR (NM_181809, exon 1 of 7)	129	NM_181809	353500		NM_181809	ENSG00000183682	BMP8A	OP-2|Op2	bone morphogenetic protein 8a	protein-coding
194155	chr6	32044251	32044550	+	0	NA	exon (NM_001365276, exon 33 of 44).4	exon (NM_001365276, exon 33 of 44).4	1728	NM_032470	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
123956	chr19	55398221	55399200	+	0	NA	intron (NM_001363697, intron 4 of 4)	intron (NM_001363697, intron 4 of 4)	3947	NR_145781	109623451		NR_145781		SNORD157	-	small nucleolar RNA, C/D box 157	snoRNA
140896	chr2	237676221	237676880	+	0	NA	intron (NM_001137550, intron 1 of 23)	AluSz6|SINE|Alu	-15614	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
237637	chrX	124211421	124211900	+	0	NA	Intergenic	Intergenic	-121000	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
79675	chr16	1245701	1245900	+	0	NA	Intergenic	L1MC3|LINE|L1	5095	NM_003294	7177		NM_003294	ENSG00000172236	TPSAB1	TPS1|TPS2|TPSB1|TPSB2|Tryptase-2	tryptase alpha/beta 1	protein-coding
219122	chr8	66022301	66022500	+	0	NA	intron (NR_146171, intron 1 of 6)	intron (NR_146171, intron 1 of 6)	847	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
175270	chr4	67522451	67522630	+	0	NA	intron (NR_155754, intron 5 of 18)	MLT1G3|LTR|ERVL-MaLR	22963	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
107639	chr18	48961821	48962080	+	0	NA	Intergenic	AluSc8|SINE|Alu	-11239	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
136945	chr2	190318751	190320080	+	0	NA	intron (NM_198047, intron 1 of 12)	intron (NM_198047, intron 1 of 12)	411	NM_198047	26275		NM_014362	ENSG00000198130	HIBCH	HIBYLCOAH	3-hydroxyisobutyryl-CoA hydrolase	protein-coding
134804	chr2	148046651	148046950	+	0	NA	intron (NM_018328, intron 2 of 14)	intron (NM_018328, intron 2 of 14)	-25196	NM_181742	5000		NM_002552	ENSG00000115947	ORC4	ORC4L|ORC4P	origin recognition complex subunit 4	protein-coding
95841	chr17	38814271	38814630	+	0	NA	intron (NM_017748, intron 3 of 9)	intron (NM_017748, intron 3 of 9)	10871	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
91849	chr17	7212471	7213050	+	0	NA	intron (NR_135527, intron 3 of 20)	AluSg4|SINE|Alu	-4365	NM_001270447	37		NM_000018	ENSG00000072778	ACADVL	ACAD6|LCACD|VLCAD	acyl-CoA dehydrogenase very long chain	protein-coding
79714	chr16	1314401	1314680	+	0	NA	intron (NM_194259, intron 4 of 7)	intron (NM_194259, intron 4 of 7)	4904	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
135090	chr2	157331401	157332430	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-4203	NM_001009959	57471		NM_020711	ENSG00000136541	ERMN	JN|KIAA1189	ermin	protein-coding
59184	chr13	22060821	22062600	+	0	NA	Intergenic	Intergenic	-148575	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
20505	chr1	198661701	198662250	+	0	NA	intron (NM_002838, intron 2 of 32)	CR1-L3A_Croc|LINE|CR1	22935	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
74278	chr15	57565421	57565750	+	0	NA	Intergenic	Intergenic	-26319	NM_001018091	145781		NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GCOM1, MYZAP-POLR2M combined locus	protein-coding
161359	chr3	40460601	40460800	+	0	NA	intron (NM_001034996, intron 3 of 5)	AluSx1|SINE|Alu	3361	NM_001034996	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
225376	chr9	34991521	34992080	+	0	NA	intron (NM_001349725, intron 2 of 4)	intron (NM_001349725, intron 2 of 4)	1510	NM_001135005	25822		NM_012266	ENSG00000137094	DNAJB5	Hsc40	DnaJ heat shock protein family (Hsp40) member B5	protein-coding
123606	chr19	54505551	54505980	+	0	NA	intron (NM_021270, intron 2 of 3).2	intron (NM_021270, intron 2 of 3).2	2934	NM_021270	3904		NM_002288	ENSG00000167618	LAIR2	CD306	leukocyte associated immunoglobulin like receptor 2	protein-coding
110530	chr19	2079471	2080750	+	0	NA	intron (NM_130807, intron 2 of 4)	intron (NM_130807, intron 2 of 4)	16216	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
200031	chr6	129686071	129686380	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	23952	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
36644	chr11	7688221	7688500	+	0	NA	Intergenic	Intergenic	-14093	NM_001302826	51700		NM_016229	ENSG00000166394	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
223100	chr8	143432151	143432250	+	0	NA	Intergenic	Intergenic	-1468	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
152436	chr22	20588751	20588850	+	0	NA	Intergenic	Intergenic	80753	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
239439	chrY	56704351	56704650	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-249755	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
109437	chr19	728551	728850	+	0	NA	intron (NM_002579, intron 4 of 8)	AluSz|SINE|Alu	19765	NM_002579	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
157842	chr22	48138871	48139030	+	0	NA	Intergenic	Intergenic	-135414	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	ncRNA
200304	chr6	132826351	132826450	+	0	NA	Intergenic	AluSc|SINE|Alu	9181	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
58969	chr13	19856521	19856980	+	0	NA	intron (NM_001039649, intron 2 of 4)	AluSc8|SINE|Alu	6886	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
98516	chr17	47534721	47535180	+	0	NA	intron (NM_006310, intron 1 of 22)	intron (NM_006310, intron 1 of 22)	3842	NM_006310	9520		NM_006310	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
171757	chr3	198160121	198160380	+	0	NA	intron (NR_146164, intron 3 of 17)	MER57C2|LTR|ERV1	7044	NR_146164	728262		NM_001145248	ENSG00000290937	FAM157A	GTF2IP18	family with sequence similarity 157 member A	ncRNA
214285	chr7	149066751	149066850	+	0	NA	Intergenic	AluSx|SINE|Alu	23918	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
95148	chr17	35075421	35075750	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	-11878	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
211133	chr7	102537151	102537930	+	0	NA	TTS (NM_001363506)	TTS (NM_001363506)	7248	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
6726	chr1	30191121	30191780	+	0	NA	Intergenic	Intergenic	-153838	NR_110790	101929406		NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
32925	chr10	110226401	110228080	+	0	NA	intron (NM_005962, intron 1 of 5)	CpG	1244	NM_005962	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
109896	chr19	1274151	1274450	+	0	NA	non-coding (NR_023312, exon 6 of 7)	non-coding (NR_023312, exon 6 of 7)	-1230	NM_017914	55009		NM_017914	ENSG00000228300	FAM174C	C19orf24	family with sequence similarity 174 member C	protein-coding
31040	chr10	88892251	88892350	+	0	NA	intron (NM_020799, intron 1 of 10)	MER5A|DNA|hAT-Charlie	12055	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
28388	chr10	47449051	47449550	+	0	NA	Intergenic	L1M5|LINE|L1	34815	NM_001040084	653145		NM_001040084	ENSG00000265190	ANXA8	ANX8|CH17-360D5.2	annexin A8	protein-coding
178909	chr4	158670201	158670400	+	0	NA	intron (NR_077234, intron 1 of 1)	AluSp|SINE|Alu	1587	NM_001008393	201725		NM_001008393	ENSG00000205208	C4orf46	RCDG1	chromosome 4 open reading frame 46	protein-coding
193004	chr6	28211921	28212750	+	0	NA	Intergenic	Intergenic	6594	NR_002936	222699		NR_002936		TOB2P1	TOB2P|TOB4p|p373c6.3	transducer of ERBB2, 2 pseudogene 1	pseudo
61567	chr13	68171421	68171500	+	0	NA	Intergenic	LTR12C|LTR|ERV1	713865	NR_038878	338862		NR_038878	ENSG00000281778	LINC00550	-	long intergenic non-protein coding RNA 550	ncRNA
96765	chr17	41729101	41730000	+	0	NA	intron (NM_177977, intron 6 of 10)	AluSz|SINE|Alu	5093	NM_001367462	9001		NM_003949	ENSG00000173805	HAP1	HAP2|HIP5|HLP|hHLP1	huntingtin associated protein 1	protein-coding
139108	chr2	218908051	218908150	+	0	NA	intron (NR_110238, intron 3 of 4)	AluSq|SINE|Alu	22537	NR_110238	101928537		NR_110238	ENSG00000228135	LINC01494	-	long intergenic non-protein coding RNA 1494	ncRNA
46626	chr11	128626521	128626880	+	0	NA	Intergenic	Intergenic	-39142	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
193331	chr6	30185351	30185450	+	0	NA	3' UTR (NM_003449, exon 10 of 10).3	3' UTR (NM_003449, exon 10 of 10).3	21854	NM_033229	89870		NM_033229	ENSG00000204610	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
87998	chr16	80744001	80744200	+	0	NA	intron (NM_152342, intron 1 of 6)	MIR|SINE|MIR	60498	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
152897	chr22	22733901	22734450	+	0	NA	Intergenic	Intergenic	87863	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
112817	chr19	7509751	7510630	+	0	NA	Intergenic	Intergenic	-5913	NM_018083	140467		NM_018083	ENSG00000198816	ZNF358	ZFEND	zinc finger protein 358	protein-coding
78080	chr15	90226601	90227250	+	0	NA	intron (NM_001324034, intron 12 of 13)	intron (NM_001324034, intron 12 of 13)	7016	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
104505	chr17	81224821	81225180	+	0	NA	Intergenic	AluY|SINE|Alu	-2035	NM_001319229	22994		NM_014984	ENSG00000141577	CEP131	AZ1|AZI1|ZA1	centrosomal protein 131	protein-coding
4714	chr1	23184101	23184930	+	0	NA	Intergenic	Intergenic	-15657	NM_001142546	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
178659	chr4	152463471	152463830	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	25766	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
102386	chr17	75576051	75576150	+	0	NA	TTS (NM_001031803)	TTS (NM_001031803)	-11958	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
197853	chr6	88982701	88983130	+	0	NA	Intergenic	Intergenic	-19297	NM_001286428	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
19839	chr1	182874171	182874330	+	0	NA	intron (NM_001357, intron 15 of 27)	L1MC3|LINE|L1	-34659	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
96790	chr17	41811251	41812980	+	0	NA	promoter-TSS (NM_006455)	promoter-TSS (NM_006455)	-166	NM_006455	10609		NM_006455	ENSG00000141696	P3H4	LEPREL4|NO55|NOL55|SC65	prolyl 3-hydroxylase family member 4 (inactive)	protein-coding
183524	chr5	79729621	79729880	+	0	NA	exon (NM_153610, exon 2 of 13)	exon (NM_153610, exon 2 of 13)	39914	NM_153610	202333		NM_153610	ENSG00000164309	CMYA5	C5orf10|SPRYD2|TRIM76	cardiomyopathy associated 5	protein-coding
140437	chr2	233140401	233140630	+	0	NA	intron (NM_001017915, intron 6 of 26).2	AluJr|SINE|Alu	80173	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
159387	chr3	13415351	13416780	+	0	NA	intron (NM_024923, intron 1 of 39)	intron (NM_024923, intron 1 of 39)	4257	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
145769	chr20	45354771	45355530	+	0	NA	Intergenic	L2c|LINE|L2	-6726	NM_002999	6385		NM_002999	ENSG00000124145	SDC4	SYND4	syndecan 4	protein-coding
236195	chrX	65672751	65672850	+	0	NA	intron (NM_002444, intron 1 of 12)	MIR3|SINE|MIR	5146	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
29097	chr10	68223751	68223850	+	0	NA	Intergenic	MER74B|LTR|ERVL	8313	NM_145178	220202		NM_145178	ENSG00000179774	ATOH7	Math5|NCRNA|PHPVAR|RNANC|bHLHa13	atonal bHLH transcription factor 7	protein-coding
86319	chr16	63388541	63388650	+	0	NA	Intergenic	L1PA2|LINE|L1	-1352157	NM_001796	1006		NM_001796	ENSG00000150394	CDH8	Nbla04261	cadherin 8	protein-coding
28512	chr10	50335571	50335730	+	0	NA	intron (NM_147156, intron 7 of 10)	intron (NM_147156, intron 7 of 10)	-84134	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
115419	chr19	15300671	15301330	+	0	NA	intron (NM_001379291, intron 1 of 19)	L1ME1|LINE|L1	-20549	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
155499	chr22	38653771	38654080	+	0	NA	intron (NM_001384271, intron 1 of 14)	L2b|LINE|L2	2467	NM_001013647	646851		NM_001013647	ENSG00000184949	FAM227A	-	family with sequence similarity 227 member A	protein-coding
90133	chr16	90215271	90215580	+	0	NA	Intergenic	Intergenic	113161	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
8811	chr1	42944251	42944600	+	0	NA	intron (NM_006516, intron 1 of 9)	intron (NM_006516, intron 1 of 9)	14443	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
124182	chr19	56149421	56149680	+	0	NA	intron (NM_018337, intron 3 of 4)	L1PA8|LINE|L1	8263	NM_001253792	55311		NM_018337	ENSG00000167685	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
81683	chr16	11206751	11207630	+	0	NA	Intergenic	AluSg|SINE|Alu	48992	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
149752	chr21	34614021	34615600	+	0	NA	promoter-TSS (NM_001285389)	promoter-TSS (NM_001285389)	303	NM_004414	1827		NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
159014	chr3	10505001	10505730	+	0	NA	intron (NM_001353564, intron 2 of 20)	A-rich|Low_complexity|Low_complexity	219	NM_001363862	491		NM_001683	ENSG00000157087	ATP2B2	DFNA82|PMCA2|PMCA2a|PMCA2i	ATPase plasma membrane Ca2+ transporting 2	protein-coding
119094	chr19	39296951	39297050	+	0	NA	intron (NM_172140, intron 2 of 4)	intron (NM_172140, intron 2 of 4)	593	NM_172140	282618		NM_172140	ENSG00000182393	IFNL1	IL-29|IL29	interferon lambda 1	protein-coding
109868	chr19	1236501	1236800	+	0	NA	intron (NM_152769, intron 1 of 8)	CpG	1355	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
185681	chr5	131777751	131778050	+	0	NA	intron (NM_133372, intron 1 of 17)	MER5A|DNA|hAT-Charlie	19117	NM_001008738	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
56704	chr12	120090971	120091950	+	0	NA	intron (NR_147893, intron 10 of 10)	intron (NR_147893, intron 10 of 10)	25293	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
39412	chr11	60853301	60853500	+	0	NA	exon (NM_004778, exon 2 of 2)	exon (NM_004778, exon 2 of 2)	2550	NM_004778	11251		NM_004778	ENSG00000183134	PTGDR2	CD294|CRTH2|DL1R|DP2|GPR44	prostaglandin D2 receptor 2	protein-coding
10996	chr1	84559971	84560130	+	0	NA	intron (NM_004388, intron 6 of 6)	AluSx1|SINE|Alu	14390	NM_004388	1486		NM_004388	ENSG00000117151	CTBS	CTB	chitobiase	protein-coding
230203	chr9	127814821	127815080	+	0	NA	TTS (NM_001288803)	TTS (NM_001288803)	-1116	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
145835	chr20	45832671	45832830	+	0	NA	Intergenic	Intergenic	-1049	NM_152897	90203		NM_033421	ENSG00000124104	SNX21	C20orf161|PP3993|SNX-L|SNXL|dJ337O18.4	sorting nexin family member 21	protein-coding
79222	chr16	366101	366780	+	0	NA	TTS (NM_006428)	TTS (NM_006428)	4098	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
107701	chr18	49559421	49559900	+	0	NA	Intergenic	AluSp|SINE|Alu	-2397	NM_001308006	9388		NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding
218786	chr8	59005901	59006100	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	113147	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
63657	chr14	20999021	20999280	+	0	NA	promoter-TSS (NM_001256588)	promoter-TSS (NM_001256588)	13	NR_110139	101929718		NR_110139	ENSG00000258471	LOC101929718	-	uncharacterized LOC101929718	ncRNA
153724	chr22	29297951	29298250	+	0	NA	intron (NM_001163286, intron 12 of 15)	intron (NM_001163286, intron 12 of 15)	-8923	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
21404	chr1	205289771	205290580	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	31570	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
227512	chr9	91360271	91360430	+	0	NA	5' UTR (NM_001351432, exon 2 of 11)	5' UTR (NM_001351432, exon 2 of 11)	1568	NM_001698	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
154395	chr22	35306371	35307000	+	0	NA	intron (NR_156428, intron 1 of 13)	MIR|SINE|MIR	6791	NR_156428	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
114315	chr19	11986301	11986500	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1217	NR_134927	101928464		NR_134927	ENSG00000219665	ZNF433-AS1	-	ZNF433 and ZNF878 antisense RNA 1	ncRNA
162028	chr3	46629551	46630650	+	0	NA	Intergenic	LTR33A|LTR|ERVL	17575	NM_001195442	100132146		NM_001195442	ENSG00000283473	FAM240A	-	family with sequence similarity 240 member A	protein-coding
222441	chr8	135452401	135452670	+	0	NA	Intergenic	Intergenic	-4921	NM_006558	10656		NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH RNA binding domain containing, signal transduction associated 3	protein-coding
208442	chr7	66864901	66865100	+	0	NA	intron (NR_135738, intron 4 of 6)	intron (NR_135738, intron 4 of 6)	17550	NR_135738	101929580		NR_135738		GTF2IP23	-	general transcription factor IIi pseudogene 23	pseudo
64309	chr14	23569701	23570380	+	0	NA	intron (NM_001146028, intron 5 of 5)	intron (NM_001146028, intron 5 of 5)	-2249	NR_148937	8906		NM_003917	ENSG00000213983	AP1G2	G2AD	adaptor related protein complex 1 subunit gamma 2	protein-coding
129225	chr2	68246551	68246650	+	0	NA	intron (NM_000945, intron 1 of 5)	L2c|LINE|L2	5932	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
211716	chr7	106873501	106873700	+	0	NA	intron (NM_001282426, intron 4 of 10)	MER2|DNA|TcMar-Tigger	8121	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
68445	chr14	81523651	81523950	+	0	NA	intron (NM_005065, intron 3 of 20)	MER21B|LTR|ERVL	10053	NM_005065	6400		NM_005065	ENSG00000071537	SEL1L	Hrd3|PRO1063|SEL1-LIKE|SEL1L1	SEL1L adaptor subunit of SYVN1 ubiquitin ligase	protein-coding
128935	chr2	64533071	64533630	+	0	NA	intron (NM_203437, intron 1 of 9)	AluJb|SINE|Alu	7837	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
187391	chr5	141882621	141882900	+	0	NA	Intergenic	Intergenic	-4350	NM_002587	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
92602	chr17	9575121	9576100	+	0	NA	intron (NM_004853, intron 1 of 7)	intron (NM_004853, intron 1 of 7)	210	NM_004853	9482		NM_004853	ENSG00000170310	STX8	CARB	syntaxin 8	protein-coding
29129	chr10	68524921	68526030	+	0	NA	intron (NM_001324314, intron 1 of 9)	AluJb|SINE|Alu	2048	NM_001324313	8034		NM_152707	ENSG00000122912	SLC25A16	D10S105E|GDA|GDC|HGT.1|ML7|hGP|hML7	solute carrier family 25 member 16	protein-coding
153623	chr22	28673751	28674800	+	0	NA	intron (NM_001145418, intron 1 of 22)	intron (NM_001145418, intron 1 of 22)	5590	NM_001145418	23331		NM_015281	ENSG00000100154	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
100752	chr17	63949671	63950100	+	0	NA	intron (NM_000334, intron 14 of 23)	intron (NM_000334, intron 14 of 23)	-17554	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
164212	chr3	56893271	56894180	+	0	NA	intron (NM_001377407, intron 3 of 12)	AluSx|SINE|Alu	22711	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
14096	chr1	120910251	120911100	+	0	NA	Intergenic	MER31-int|LTR|ERV1	-1563	NR_024584	728855		NR_024510		LINC00623	CH17-118O6.2	long intergenic non-protein coding RNA 623	ncRNA
140868	chr2	237473321	237473580	+	0	NA	Intergenic	LTR33|LTR|ERVL	-12960	NM_001281474	79083		NM_024101	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding
206691	chr7	36505651	36505750	+	0	NA	Intergenic	LTR9|LTR|ERV1	94420	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
104164	chr17	80408801	80409200	+	0	NA	intron (NR_029376, intron 1 of 1)	Harlequin-int|LTR|ERV1	-6167	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
7362	chr1	32800971	32801980	+	0	NA	intron (NM_003680, intron 4 of 12)	Tigger1|DNA|TcMar-Tigger	-15967	NM_001256121	64766		NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding
164983	chr3	71310621	71311280	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-6179	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
137563	chr2	197247051	197247450	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	49259	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
15815	chr1	151300721	151301580	+	0	NA	intron (NM_001369628, intron 8 of 12)	intron (NM_001369628, intron 8 of 12)	18851	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
175543	chr4	74793871	74794030	+	0	NA	intron (NM_001729, intron 1 of 5)	CpG	573	NM_001316963	685		NM_001729	ENSG00000174808	BTC	-	betacellulin	protein-coding
47322	chr12	1786751	1786850	+	0	NA	3' UTR (NM_024551, exon 8 of 8)	3' UTR (NM_024551, exon 8 of 8)	-33467	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
142738	chr20	10353201	10353600	+	0	NA	Intergenic	Intergenic	78525	NM_018848	8195		NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	MKKS centrosomal shuttling protein	protein-coding
196541	chr6	44005201	44005600	+	0	NA	non-coding (NR_160954, exon 4 of 4)	non-coding (NR_160954, exon 4 of 4)	-1750	NR_125865	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
219297	chr8	69833821	69834400	+	0	NA	promoter-TSS (NM_001146009)	promoter-TSS (NM_001146009)	-755	NM_001146008	81796		NM_030958	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15	solute carrier organic anion transporter family member 5A1	protein-coding
210514	chr7	100214271	100214880	+	0	NA	TTS (NM_001282716)	TTS (NM_001282716)	-4673	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
33508	chr10	119164901	119166550	+	0	NA	promoter-TSS (NM_213649)	promoter-TSS (NM_213649)	-11	NM_213649	119559		NM_178867	ENSG00000183605	SFXN4	BCRM1|COXPD18|SLC56A4	sideroflexin 4	protein-coding
42789	chr11	72780651	72780830	+	0	NA	intron (NM_006645, intron 2 of 6)	intron (NM_006645, intron 2 of 6)	-2790	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
202216	chr6	156796621	156797030	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-17094	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
22606	chr1	223308251	223308350	+	0	NA	intron (NM_001037175, intron 2 of 5)	MSTA|LTR|ERVL-MaLR	55876	NM_001037175	55061		NM_017982	ENSG00000143502	SUSD4	PRO222	sushi domain containing 4	protein-coding
163300	chr3	50342301	50343350	+	0	NA	intron (NM_001308379, intron 6 of 10)	intron (NM_001308379, intron 6 of 10)	-1889	NM_001206957	11186		NM_007182	ENSG00000068028	RASSF1	123F2|NORE2A|RASSF1A|RDA32|REH3P21	Ras association domain family member 1	protein-coding
32717	chr10	104231501	104232930	+	0	NA	exon (NM_025145, exon 1 of 38)	exon (NM_025145, exon 1 of 38)	149	NM_025145	80217		NM_025145	ENSG00000197748	CFAP43	C10orf79|HYDNP1|SPGF19|WDR96|bA373N18.2	cilia and flagella associated protein 43	protein-coding
161053	chr3	38021001	38021350	+	0	NA	intron (NM_006225, intron 1 of 14)	intron (NM_006225, intron 1 of 14)	3345	NM_001130964	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
53920	chr12	71666101	71666350	+	0	NA	intron (NM_031435, intron 1 of 2)	intron (NM_031435, intron 1 of 2)	1924	NM_031435	83591		NM_031435	ENSG00000173451	THAP2	-	THAP domain containing 2	protein-coding
170423	chr3	185613221	185613800	+	0	NA	intron (NM_021627, intron 10 of 16)	intron (NM_021627, intron 10 of 16)	27215	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
221159	chr8	119858071	119858430	+	0	NA	Intergenic	Intergenic	-2356	NM_024094	79075		NM_024094	ENSG00000136982	DSCC1	DCC1	DNA replication and sister chromatid cohesion 1	protein-coding
165176	chr3	72426271	72427080	+	0	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	19948	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
44652	chr11	110329471	110329650	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	-25554	NR_135100	105369486		NR_135100		LINC02732	-	long intergenic non-protein coding RNA 2732	ncRNA
146181	chr20	48752801	48753300	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	74949	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138681	chr2	213064021	213064480	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	86187	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
182842	chr5	69335801	69336000	+	0	NA	Intergenic	Intergenic	-3099	NM_176816	202243		NM_176816	ENSG00000183323	CCDC125	KENAE	coiled-coil domain containing 125	protein-coding
132763	chr2	109798501	109798700	+	0	NA	intron (NM_001384364, intron 1 of 22).2	intron (NM_001384364, intron 1 of 22).2	3991	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
212281	chr7	123724601	123725030	+	0	NA	intron (NM_003941, intron 1 of 10)	intron (NM_003941, intron 1 of 10)	24188	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
174148	chr4	36241521	36242230	+	0	NA	intron (NR_146894, intron 1 of 32)	intron (NR_146894, intron 1 of 32)	2064	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
213328	chr7	135213501	135214150	+	0	NA	Intergenic	Intergenic	-2299	NM_001362737	29062		NM_014149	ENSG00000105875	WDR91	HSPC049|SORF-1|SORF1	WD repeat domain 91	protein-coding
63912	chr14	21933671	21933900	+	0	NA	Intergenic	Intergenic	-262768	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
187436	chr5	142088121	142089160	+	0	NA	Intergenic	Intergenic	-20139	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
51581	chr12	52629521	52629980	+	0	NA	Intergenic	Intergenic	-11191	NM_175068	319101		NM_175068	ENSG00000186049	KRT73	CK-73|IRT6IRS3|K6IRS3|K73|KRT6IRS3	keratin 73	protein-coding
55589	chr12	106581371	106581950	+	0	NA	intron (NR_040246, intron 1 of 3)	CpG	-1344	NM_213594	5992		NM_002920	ENSG00000111783	RFX4	NYD-SP10	regulatory factor X4	protein-coding
204333	chr7	2734871	2735430	+	0	NA	intron (NM_001282441, intron 3 of 4)	intron (NM_001282441, intron 3 of 4)	27990	NM_001282440	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
130833	chr2	87078551	87079200	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2462	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
118067	chr19	34318901	34319100	+	0	NA	intron (NM_014686, intron 2 of 13)	AluSx|SINE|Alu	-45740	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
192151	chr6	17014301	17014900	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-87450	NM_001190766	401236		NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
16352	chr1	154327151	154327850	+	0	NA	promoter-TSS (NM_001372009)	promoter-TSS (NM_001372009)	-247	NM_001372009	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
54433	chr12	91585571	91585730	+	0	NA	Intergenic	Intergenic	-402833	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
131611	chr2	96896571	96896730	+	0	NA	intron (NM_001122646, intron 13 of 16)	intron (NM_001122646, intron 13 of 16)	1483	NM_016490	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
30089	chr10	73913801	73914000	+	0	NA	intron (NM_002658, intron 7 of 10)	intron (NM_002658, intron 7 of 10)	2768	NM_001319191	5328		NM_002658	ENSG00000122861	PLAU	ATF|BDPLT5|QPD|UPA|URK|u-PA	plasminogen activator, urokinase	protein-coding
40017	chr11	62663771	62663930	+	0	NA	intron (NM_001367941, intron 5 of 6)	AluSx1|SINE|Alu	1360	NM_001286086	102288414		NM_001286086	ENSG00000278615	C11orf98	C11orf48	chromosome 11 open reading frame 98	protein-coding
29327	chr10	69399151	69399250	+	0	NA	intron (NM_033498, intron 20 of 20)	intron (NM_033498, intron 20 of 20)	17718	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
119406	chr19	40262951	40263550	+	0	NA	intron (NM_001243028, intron 1 of 12)	intron (NM_001243028, intron 1 of 12)	2101	NM_001330511	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
84210	chr16	29878751	29878850	+	0	NA	intron (NM_001114099, intron 9 of 16)	AluY|SINE|Alu	14966	NR_015396	440356		NR_015396	ENSG00000293487	CDIPTOSP	CDIPT-AS1|lnc-CTHCC	CDIP transferase opposite strand, pseudogene	ncRNA
147538	chr20	59455671	59456000	+	0	NA	Intergenic	Intergenic	-121674	NM_001199505	116154		NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
43102	chr11	74950621	74951050	+	0	NA	intron (NM_014752, intron 1 of 4)	AluJr|SINE|Alu	1569	NM_014752	9789		NM_014752	ENSG00000118363	SPCS2	-	signal peptidase complex subunit 2	protein-coding
193468	chr6	30527301	30529000	+	0	NA	Intergenic	Intergenic	11884	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
156180	chr22	40238821	40239750	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	61360	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
218264	chr8	42182801	42183350	+	0	NA	intron (NM_001319189, intron 5 of 11)	AluSx|SINE|Alu	24490	NM_000930	5327		NM_000930	ENSG00000104368	PLAT	T-PA|TPA	plasminogen activator, tissue type	protein-coding
26079	chr10	13107771	13109080	+	0	NA	intron (NM_001008212, intron 2 of 14)	intron (NM_001008212, intron 2 of 14)	8262	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
40834	chr11	65011951	65012580	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1848	NR_037650	100528018		NR_037650	ENSG00000273003	ARL2-SNX15	-	ARL2-SNX15 readthrough (NMD candidate)	ncRNA
179844	chr5	490121	490380	+	0	NA	intron (NM_001284351, intron 2 of 16)	intron (NM_001284351, intron 2 of 16)	17014	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
120256	chr19	42438321	42439050	+	0	NA	intron (NR_133910, intron 1 of 3)	L1MC4a|LINE|L1	4261	NM_198477	284340		NM_198477	ENSG00000189377	CXCL17	DMC|Dcip1|UNQ473|VCC-1|VCC1	C-X-C motif chemokine ligand 17	protein-coding
3066	chr1	12175001	12176050	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	8534	NM_001066	7133		NM_001066	ENSG00000028137	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	TNF receptor superfamily member 1B	protein-coding
212000	chr7	114085201	114085600	+	0	NA	promoter-TSS (NR_033766)	promoter-TSS (NR_033766)	-927	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
102501	chr17	75764271	75766980	+	0	NA	promoter-TSS (NM_000154)	promoter-TSS (NM_000154)	-433	NM_000154	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
235672	chrX	48579371	48580900	+	0	NA	3' UTR (NM_006743, exon 7 of 7)	3' UTR (NM_006743, exon 7 of 7)	5651	NM_006743	5935		NM_006743	ENSG00000102317	RBM3	IS1-RNPL|RNPL	RNA binding motif protein 3	protein-coding
128502	chr2	59887851	59888550	+	0	NA	Intergenic	Intergenic	494836	NR_132991	106660609		NR_132991	ENSG00000228590	MIR4432HG	-	MIR4432 host gene	ncRNA
133302	chr2	113628821	113629080	+	0	NA	intron (NR_148880, intron 2 of 6)	intron (NR_148880, intron 2 of 6)	1684	NM_001306161	11159		NM_007082	ENSG00000144134	RABL2A	-	RAB, member of RAS oncogene family like 2A	protein-coding
132664	chr2	108751551	108751850	+	0	NA	exon (NM_006267, exon 11 of 29)	exon (NM_006267, exon 11 of 29)	32218	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
201781	chr6	149967901	149969480	+	0	NA	non-coding (NR_133659, exon 2 of 5)	non-coding (NR_133659, exon 2 of 5)	4747	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
38101	chr11	35216671	35217730	+	0	NA	intron (NM_001202557, intron 6 of 8)	intron (NM_001202557, intron 6 of 8)	54250	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
64107	chr14	22790271	22790430	+	0	NA	intron (NM_003982, intron 2 of 9)	AluJb|SINE|Alu	23662	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
34238	chr10	130138501	130138700	+	0	NA	intron (NM_001199868, intron 1 of 11)	intron (NM_001199868, intron 1 of 11)	2191	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
91413	chr17	4705571	4705730	+	0	NA	TTS (NR_103482)	TTS (NR_103482)	1420	NR_103482	101559451		NR_103482	ENSG00000244184	PELP1-DT	-	PELP1 divergent transcript	ncRNA
225349	chr9	34653001	34653200	+	0	NA	promoter-TSS (NR_052010)	promoter-TSS (NR_052010)	-797	NR_052010	3590		NM_004512	ENSG00000137070	IL11RA	CRSDA	interleukin 11 receptor subunit alpha	protein-coding
90880	chr17	2382571	2383600	+	0	NA	TTS (NM_020310)	TTS (NM_020310)	17975	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
27489	chr10	32190421	32191200	+	0	NA	Intergenic	Intergenic	-134385	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
11764	chr1	92365621	92366650	+	0	NA	intron (NM_024813, intron 11 of 12)	intron (NM_024813, intron 11 of 12)	67076	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
187897	chr5	148831571	148831780	+	0	NA	Intergenic	Intergenic	5064	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
34989	chr11	516271	516580	+	0	NA	Intergenic	L1MD|LINE|L1	-9183	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
39635	chr11	61531971	61532400	+	0	NA	intron (NM_001370210, intron 2 of 5)	MIR3|SINE|MIR	10691	NM_001370210	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
44917	chr11	115488871	115489030	+	0	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	15465	NM_001301045	23705		NM_014333	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
89547	chr16	89205201	89205400	+	0	NA	Intergenic	AluYe6|SINE|Alu	-3622	NM_001384764	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
80658	chr16	3010201	3010400	+	0	NA	Intergenic	Intergenic	-2623	NM_020982	9080		NM_020982	ENSG00000213937	CLDN9	DFNB116	claudin 9	protein-coding
191449	chr6	10720101	10721450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2140	NM_001165258	51522		NM_016462	ENSG00000111843	TMEM14C	C6orf53|HSPC194|MSTP073|NET26|bA421M1.6	transmembrane protein 14C	protein-coding
4449	chr1	21330651	21330750	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	14804	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
6247	chr1	27555351	27555450	+	0	NA	intron (NM_001029882, intron 3 of 6)	intron (NM_001029882, intron 3 of 6)	48094	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
38808	chr11	47288301	47288500	+	0	NA	intron (NM_001376662, intron 15 of 30)	intron (NM_001376662, intron 15 of 30)	-16290	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
208711	chr7	73302651	73302750	+	0	NA	3' UTR (NM_001168347, exon 10 of 10)	3' UTR (NM_001168347, exon 10 of 10)	6126	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
134210	chr2	134634151	134634250	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	84800	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
222712	chr8	141310971	141311300	+	0	NA	Intergenic	AluJo|SINE|Alu	-2847	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
225043	chr9	33161021	33162250	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-5313	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
85344	chr16	50166671	50167850	+	0	NA	intron (NM_001040284, intron 2 of 12)	MER30|DNA|hAT-Charlie	13954	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
14326	chr1	143901671	143902050	+	0	NA	TTS (NM_001355409)	TTS (NM_001355409)	2790	NR_160913	338391		NR_160913		H2BP2	HIST2H2BB	H2B histone pseudogene 2	pseudo
101115	chr17	65019251	65019630	+	0	NA	intron (NM_001282425, intron 2 of 3)	L1MA2|LINE|L1	36334	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
193837	chr6	31526151	31526830	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2472	NM_001011700	401250		NM_001011700	ENSG00000204511	MCCD1	-	mitochondrial coiled-coil domain 1	protein-coding
224445	chr9	15412401	15412880	+	0	NA	Intergenic	L1PB1|LINE|L1	-10144	NM_001039697	6619		NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
165149	chr3	71984971	71985450	+	0	NA	Intergenic	MIRb|SINE|MIR	115245	NR_104116	285286		NR_104116	ENSG00000241163	LINC00877	-	long intergenic non-protein coding RNA 877	ncRNA
216572	chr8	21921751	21922500	+	0	NA	intron (NM_001362802, intron 1 of 26)	intron (NM_001362802, intron 1 of 26)	2463	NM_001362802	23039		NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
86117	chr16	57667371	57668130	+	0	NA	promoter-TSS (NM_001308360)	promoter-TSS (NM_001308360)	-556	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
152391	chr22	20532421	20533200	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	24763	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
83973	chr16	29253871	29254230	+	0	NA	Intergenic	Intergenic	-48237	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
112311	chr19	5891321	5891630	+	0	NA	3' UTR (NM_001193375, exon 4 of 4)	3' UTR (NM_001193375, exon 4 of 4)	12315	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
180318	chr5	5534371	5534530	+	0	NA	Intergenic	Intergenic	111773	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
104932	chr17	81926001	81927000	+	0	NA	intron (NM_002359, intron 1 of 2)	intron (NM_002359, intron 1 of 2)	1235	NM_002359	4097		NM_002359	ENSG00000197063	MAFG	hMAF	MAF bZIP transcription factor G	protein-coding
188090	chr5	150286871	150287050	+	0	NA	intron (NM_171825, intron 1 of 17)	MIRb|SINE|MIR	2813	NM_015981	815		NM_015981	ENSG00000070808	CAMK2A	CAMKA|CaMKIINalpha|CaMKIIalpha|MRD53|MRT63	calcium/calmodulin dependent protein kinase II alpha	protein-coding
47092	chr12	637671	638030	+	0	NA	intron (NR_122124, intron 3 of 4)	intron (NR_122124, intron 3 of 4)	5786	NM_001294346	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
149880	chr21	35838301	35838500	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-48045	NR_144547	54036		NR_144547		PPP1R2P2	-	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2	pseudo
17656	chr1	157490301	157490780	+	0	NA	Intergenic	MIRb|SINE|MIR	61975	NM_031281	83416		NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
234234	chrX	13028951	13029830	+	0	NA	Intergenic	Intergenic	15230	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
165092	chr3	71492101	71493000	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	49539	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
159881	chr3	16849151	16850050	+	0	NA	Intergenic	Intergenic	-35355	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
108185	chr18	63074601	63075430	+	0	NA	Intergenic	Intergenic	244754	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
142390	chr20	3815801	3816880	+	0	NA	Intergenic	Intergenic	-4184	NM_001204446	55317		NM_018347	ENSG00000125843	AP5S1	C20orf29	adaptor related protein complex 5 subunit sigma 1	protein-coding
87064	chr16	68362971	68363330	+	0	NA	intron (NM_018667, intron 7 of 8)	intron (NM_018667, intron 7 of 8)	52036	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
44725	chr11	111768921	111769380	+	0	NA	Intergenic	AluJb|SINE|Alu	-2761	NM_181700	5519		NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
71956	chr15	23565501	23565850	+	0	NA	promoter-TSS (NM_005664)	promoter-TSS (NM_005664)	1	NM_005664	7681		NM_005664	ENSG00000179455	MKRN3	CPPB2|D15S9|RNF63|ZFP127|ZNF127	makorin ring finger protein 3	protein-coding
94666	chr17	30336371	30337230	+	0	NA	Intergenic	Intergenic	-2743	NM_206832	388364		NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
93816	chr17	20698501	20699100	+	0	NA	Intergenic	Intergenic	-13646	NR_073509	100287072		NR_073509		LOC100287072	-	ribosomal protein S6 kinase B1 pseudogene	pseudo
46448	chr11	128095471	128095700	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-113181	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
233754	chrX	1391471	1393000	+	0	NA	promoter-TSS (NM_001636)	promoter-TSS (NM_001636)	-122	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
57424	chr12	121883171	121883730	+	0	NA	intron (NM_001171993, intron 1 of 15)	GA-rich|Low_complexity|Low_complexity	5161	NM_001171993	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
134037	chr2	131103021	131103400	+	0	NA	Intergenic	Intergenic	-1637	NM_001267062	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
233903	chrX	1604971	1605130	+	0	NA	intron (NM_004043, intron 1 of 9)	intron (NM_004043, intron 1 of 9)	9595	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
204039	chr7	1935821	1936080	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	4621	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
25524	chr10	7318021	7318500	+	0	NA	intron (NM_001029880, intron 4 of 20)	MER106B|DNA|hAT-Charlie	91081	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
216465	chr8	19685901	19686100	+	0	NA	intron (NM_001354476, intron 1 of 8)	intron (NM_001354476, intron 1 of 8)	-3239	NR_024040	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
189183	chr5	171414221	171414730	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-5172	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
31611	chr10	97370251	97370750	+	0	NA	exon (NM_001284337, exon 20 of 31)	exon (NM_001284337, exon 20 of 31)	30840	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
45687	chr11	119051321	119051580	+	0	NA	exon (NM_001130991, exon 13 of 26).2	exon (NM_001130991, exon 13 of 26).2	5755	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
35619	chr11	1778671	1778830	+	0	NA	Intergenic	Intergenic	-14823	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
117860	chr19	32404951	32406630	+	0	NA	promoter-TSS (NM_001172774)	promoter-TSS (NM_001172774)	20	NM_001172774	147991		NM_207325	ENSG00000178904	DPY19L3	-	dpy-19 like C-mannosyltransferase 3	protein-coding
100880	chr17	64362901	64363530	+	0	NA	exon (NM_000442, exon 6 of 16)	exon (NM_000442, exon 6 of 16)	27645	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
82827	chr16	21493871	21494530	+	0	NA	intron (NR_027155, intron 1 of 28)	L2|LINE|L2	-7326	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
233653	chrX	989951	991080	+	0	NA	Intergenic	(CTCCCT)n|Simple_repeat|Simple_repeat	222134	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
234380	chrX	15838001	15838300	+	0	NA	intron (NR_160933, intron 4 of 5)	MER20|DNA|hAT-Charlie	16663	NR_160933	8905		NM_003916	ENSG00000182287	AP1S2	DC22|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B	adaptor related protein complex 1 subunit sigma 2	protein-coding
66200	chr14	61269601	61270180	+	0	NA	Intergenic	Intergenic	11448	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
111364	chr19	3691701	3691900	+	0	NA	intron (NM_001300849, intron 1 of 16)	intron (NM_001300849, intron 1 of 16)	8668	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
177012	chr4	106314501	106314800	+	0	NA	promoter-TSS (NM_001142415)	promoter-TSS (NM_001142415)	-960	NM_001142415	9255		NM_004757	ENSG00000164022	AIMP1	EMAP2|EMAPII|HLD3|SCYE1|p43	aminoacyl tRNA synthetase complex interacting multifunctional protein 1	protein-coding
23812	chr1	234399901	234400100	+	0	NA	intron (NM_005646, intron 25 of 29)	L1PA3|LINE|L1	26299	NM_001301733	388753		NM_001012985	ENSG00000168275	COA6	C1orf31|CEMCOX4|MC4DN13	cytochrome c oxidase assembly factor 6	protein-coding
193496	chr6	30560121	30560580	+	0	NA	intron (NM_025263, intron 2 of 3).3	AluSz6|SINE|Alu	-2756	NM_005275	2794		NM_005275	ENSG00000204590	GNL1	HSR1	G protein nucleolar 1 (putative)	protein-coding
24662	chr1	247077751	247078990	+	0	NA	intron (NM_001204220, intron 1 of 3)	CpG	441	NM_033213	93474		NM_033213	ENSG00000277462	ZNF670	-	zinc finger protein 670	protein-coding
74758	chr15	63230471	63230980	+	0	NA	intron (NM_016530, intron 1 of 7)	AluJr4|SINE|Alu	41119	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
125324	chr2	10787621	10788050	+	0	NA	intron (NM_001282706, intron 11 of 13)	AluSx|SINE|Alu	24950	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
196325	chr6	43129721	43130130	+	0	NA	intron (NR_072997, intron 3 of 18)	intron (NR_072997, intron 3 of 18)	-41344	NM_003131	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
105692	chr18	2669301	2669900	+	0	NA	intron (NM_015295, intron 3 of 47)	L2a|LINE|L2	13874	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
62338	chr13	99085051	99085490	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	1424	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
63858	chr14	21641101	21641600	+	0	NA	Intergenic	Intergenic	-6410	NM_001005466	26534		NM_001005466	ENSG00000255582	OR10G2	OR14-41	olfactory receptor family 10 subfamily G member 2	protein-coding
216776	chr8	22500821	22501100	+	0	NA	intron (NM_005605, intron 4 of 13)	AluJb|SINE|Alu	-50967	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
165238	chr3	73019121	73019580	+	0	NA	intron (NM_001318025, intron 2 of 7)	intron (NM_001318025, intron 2 of 7)	22539	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
144349	chr20	35000851	35001450	+	0	NA	exon (NM_020884, exon 41 of 45)	exon (NM_020884, exon 41 of 45)	-10678	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
43094	chr11	74821651	74822150	+	0	NA	intron (NM_001098638, intron 4 of 5)	intron (NM_001098638, intron 4 of 5)	73051	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
40140	chr11	62844601	62845100	+	0	NA	Intergenic	AluY|SINE|Alu	-3041	NM_001369451	54663		NM_018093	ENSG00000133316	WDR74	Nsa1	WD repeat domain 74	protein-coding
27037	chr10	26931371	26931530	+	0	NA	non-coding (NR_026795, exon 5 of 5)	non-coding (NR_026795, exon 5 of 5)	10551	NR_026795	387644		NR_026795	ENSG00000290706	FAM238C	C10orf51|LINC00202|LINC00202-1|NCRNA00202|bB27G4.1	family with sequence similarity 238 member C	ncRNA
95724	chr17	38571751	38572150	+	0	NA	intron (NM_025248, intron 2 of 18)	intron (NM_025248, intron 2 of 18)	34002	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
89289	chr16	88697071	88697580	+	0	NA	3' UTR (NM_001171816, exon 6 of 6)	3' UTR (NM_001171816, exon 6 of 6)	6256	NM_001171816	115992		NM_178841	ENSG00000158717	RNF166	-	ring finger protein 166	protein-coding
17899	chr1	160100871	160101880	+	0	NA	Intergenic	Intergenic	-2547	NM_001206665	93185		NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
178898	chr4	158209471	158209630	+	0	NA	promoter-TSS (NM_018342)	promoter-TSS (NM_018342)	-936	NM_018342	55314		NM_018342	ENSG00000164124	TMEM144	SLC35G7	transmembrane protein 144	protein-coding
20673	chr1	200355721	200355980	+	0	NA	intron (NR_040064, intron 4 of 4)	intron (NR_040064, intron 4 of 4)	17942	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
198309	chr6	100577421	100578030	+	0	NA	intron (NM_006828, intron 36 of 41)	(AC)n|Simple_repeat|Simple_repeat	-112804	NM_005068	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
83062	chr16	22340601	22341000	+	0	NA	Intergenic	L1MA9|LINE|L1	33819	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
53422	chr12	64796221	64796500	+	0	NA	intron (NM_001330187, intron 3 of 13)	intron (NM_001330187, intron 3 of 13)	15605	NM_001330188	23329		NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
187879	chr5	148733501	148733930	+	0	NA	Intergenic	Intergenic	-79188	NM_000870	3360		NM_000870	ENSG00000164270	HTR4	5-HT4|5-HT4R	5-hydroxytryptamine receptor 4	protein-coding
63151	chr13	113607451	113607750	+	0	NA	intron (NR_026580, intron 2 of 10)	intron (NR_026580, intron 2 of 10)	22847	NM_007111	7027		NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
158723	chr3	8502701	8502900	+	0	NA	intron (NM_001278233, intron 1 of 4)	intron (NM_001278233, intron 1 of 4)	977	NM_014583	29995		NM_014583	ENSG00000071282	LMCD1	-	LIM and cysteine rich domains 1	protein-coding
15540	chr1	150534971	150535330	+	0	NA	Intergenic	Intergenic	-14258	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
107382	chr18	46068851	46069550	+	0	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	3060	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
140847	chr2	237154101	237154500	+	0	NA	Intergenic	Intergenic	68411	NM_006710	10920		NM_006710	ENSG00000198612	COPS8	COP9|CSN8|SGN8	COP9 signalosome subunit 8	protein-coding
89938	chr16	89738371	89738530	+	0	NA	non-coding (NR_110128, exon 11 of 11)	non-coding (NR_110128, exon 11 of 11)	16913	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
30955	chr10	87805021	87805480	+	0	NA	intron (NR_135914, intron 2 of 10)	intron (NR_135914, intron 2 of 10)	12981	NM_001321968	84896		NM_032810	ENSG00000138138	ATAD1	AFDC1|FNP001|HKPX4|Msp1|THORASE|hATAD1	ATPase family AAA domain containing 1	protein-coding
214474	chr7	150371251	150371700	+	0	NA	exon (NM_001099696, exon 2 of 2)	exon (NM_001099696, exon 2 of 2)	2653	NM_001362745	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
79503	chr16	790921	791480	+	0	NA	exon (NM_022092, exon 8 of 22)	exon (NM_022092, exon 8 of 22)	2580	NM_022092	63922		NM_022092	ENSG00000127586	CHTF18	C16orf41|C321D2.2|C321D2.3|C321D2.4|CHL12|Ctf18|RUVBL	chromosome transmission fidelity factor 18	protein-coding
110362	chr19	1900651	1900830	+	0	NA	Intergenic	LTR10D|LTR|ERV1	-4659	NM_138422	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
142529	chr20	5003401	5004530	+	0	NA	intron (NM_203327, intron 1 of 16)	intron (NM_203327, intron 1 of 16)	-2455	NM_005116	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
173931	chr4	25379451	25379930	+	0	NA	intron (NM_013367, intron 2 of 28)	L2|LINE|L2	2427	NM_013367	29945		NM_013367	ENSG00000053900	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
115820	chr19	16469951	16470280	+	0	NA	intron (NM_021235, intron 1 of 22)	AluSz|SINE|Alu	1855	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
237930	chrX	132133171	132133330	+	0	NA	Intergenic	L1PA3|LINE|L1	-5230	NM_001306193	90167		NM_194277	ENSG00000165694	FRMD7	NYS|NYS1|XIPAN	FERM domain containing 7	protein-coding
30437	chr10	79062971	79063330	+	0	NA	intron (NR_024431, intron 3 of 9)	intron (NR_024431, intron 3 of 9)	4298	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
223157	chr8	143532161	143533850	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	8442	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
60260	chr13	40597551	40598230	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	68751	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
5674	chr1	26337601	26338280	+	0	NA	intron (NM_001039775, intron 8 of 19)	intron (NM_001039775, intron 8 of 19)	16190	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
121860	chr19	48255151	48256650	+	0	NA	promoter-TSS (NM_001351788)	promoter-TSS (NM_001351788)	12	NM_014959	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
14113	chr1	120930651	120931250	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-11650	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
171700	chr3	197798101	197798830	+	0	NA	intron (NM_001365715, intron 1 of 20)	intron (NM_001365715, intron 1 of 20)	7211	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
39910	chr11	62515571	62515730	+	0	NA	TTS (NM_001346446)	TTS (NM_001346446)	30014	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
160265	chr3	25659751	25659850	+	0	NA	intron (NM_001330700, intron 1 of 35)	intron (NM_001330700, intron 1 of 35)	4572	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
59143	chr13	21458351	21459980	+	0	NA	non-coding (NR_104487, exon 1 of 13)	non-coding (NR_104487, exon 1 of 13)	138	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
127364	chr2	39227951	39229000	+	0	NA	intron (NM_001009565, intron 1 of 7)	intron (NM_001009565, intron 1 of 7)	1113	NM_001346911	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
2144	chr1	8382671	8383480	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	40757	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
36683	chr11	8680921	8681250	+	0	NA	Intergenic	L2c|LINE|L2	-1707	NM_000990	6157		NM_000990	ENSG00000166441	RPL27A	L27A|uL15	ribosomal protein L27a	protein-coding
152846	chr22	22117621	22118280	+	0	NA	Intergenic	CpG	-74016	NR_135291	649179		NR_135291	ENSG00000290847	PRAMENP	PRAMEF24P|PRAMEL	PRAME N-terminal like, pseudogene	pseudo
60295	chr13	40634551	40635080	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSx1|SINE|Alu	31826	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
124205	chr19	56538251	56539500	+	0	NA	promoter-TSS (NM_020828)	promoter-TSS (NM_020828)	-73	NM_001308440	140612		NM_020828	ENSG00000196867	ZFP28	mkr5	ZFP28 zinc finger protein	protein-coding
27814	chr10	37977921	37978180	+	0	NA	Intergenic	MER67C|LTR|ERV1	-1403	NM_001329657	219749		NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
34055	chr10	124745551	124746230	+	0	NA	Intergenic	Intergenic	-1512	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
213686	chr7	140085051	140085880	+	0	NA	3' UTR (NM_030647, exon 20 of 20)	3' UTR (NM_030647, exon 20 of 20)	-22514	NR_130117	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
157432	chr22	45174501	45175530	+	0	NA	intron (NM_153645, intron 4 of 8)	intron (NM_153645, intron 4 of 8)	10344	NM_153645	10762		NM_007172	ENSG00000093000	NUP50	NPAP60|NPAP60L	nucleoporin 50	protein-coding
109847	chr19	1211201	1211880	+	0	NA	intron (NM_000455, intron 1 of 9)	intron (NM_000455, intron 1 of 9)	5762	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
55247	chr12	101936151	101936450	+	0	NA	Intergenic	Intergenic	58720	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
158624	chr3	4906351	4906850	+	0	NA	promoter-TSS (NR_125914)	promoter-TSS (NR_125914)	-99	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
470	chr1	1150221	1151080	+	0	NA	Intergenic	Intergenic	13633	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
113180	chr19	8403671	8404030	+	0	NA	3' UTR (NM_004218, exon 5 of 5)	3' UTR (NM_004218, exon 5 of 5)	-9453	NM_001005415	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
173759	chr4	16884801	16885300	+	0	NA	intron (NM_001290, intron 1 of 7)	intron (NM_001290, intron 1 of 7)	13595	NM_001304434	9079		NM_001290	ENSG00000169744	LDB2	CLIM1|LDB-2|LDB1	LIM domain binding 2	protein-coding
194714	chr6	33768271	33769330	+	0	NA	Intergenic	Intergenic	18142	NM_001143944	221496		NM_181336	ENSG00000161904	LEMD2	CTRCT42|LEM2|MARUPS|NET25|dJ482C21.1	LEM domain nuclear envelope protein 2	protein-coding
46555	chr11	128484821	128485280	+	0	NA	exon (NM_001330451, exon 5 of 7)	exon (NM_001330451, exon 5 of 7)	37260	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
134128	chr2	134146221	134146480	+	0	NA	intron (NM_001371457, intron 1 of 16)	AluJo|SINE|Alu	19225	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
67914	chr14	74616101	74616300	+	0	NA	Intergenic	Intergenic	-3963	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
72511	chr15	34017721	34018780	+	0	NA	intron (NM_020371, intron 1 of 5)	Tigger3b|DNA|TcMar-Tigger	20954	NM_020371	57099		NM_020371	ENSG00000169857	AVEN	PDCD12	apoptosis and caspase activation inhibitor	protein-coding
54798	chr12	94435451	94435750	+	0	NA	intron (NM_001368039, intron 1 of 16)	L1PB1|LINE|L1	24267	NM_001346457	51134		NM_016122	ENSG00000173588	CEP83	CCDC41|NPHP18|NY-REN-58	centrosomal protein 83	protein-coding
162269	chr3	47300371	47300700	+	0	NA	intron (NM_025010, intron 1 of 9)	intron (NM_025010, intron 1 of 9)	17591	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
41387	chr11	66005651	66005750	+	0	NA	Intergenic	L1ME3C|LINE|L1	3197	NM_003860	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
35311	chr11	1029821	1030230	+	0	NA	intron (NM_005961, intron 8 of 32)	intron (NM_005961, intron 8 of 32)	6693	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
31319	chr10	92702371	92702530	+	0	NA	Intergenic	Intergenic	12495	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
82446	chr16	16359951	16360650	+	0	NA	intron (NR_146336, intron 20 of 34)	intron (NR_146336, intron 20 of 34)	-8576	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
95212	chr17	35247121	35247680	+	0	NA	intron (NM_144975, intron 1 of 4)	MER89|LTR|ERV1	4328	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
174239	chr4	37892521	37893330	+	0	NA	intron (NM_015173, intron 1 of 19)	intron (NM_015173, intron 1 of 19)	1841	NM_001253912	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
163357	chr3	50448571	50448930	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	54884	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
137914	chr2	200901151	200901810	+	0	NA	intron (NM_001369441, intron 6 of 6)	intron (NM_001369441, intron 6 of 6)	9562	NM_001142356	60491		NM_021824	ENSG00000196290	NIF3L1	ALS2CR1|CALS-7|MDS015	NGG1 interacting factor 3 like 1	protein-coding
56513	chr12	116508271	116508830	+	0	NA	Intergenic	CpG	-24872	NR_027345	100287569		NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
47104	chr12	664201	664700	+	0	NA	Intergenic	LTR81B|LTR|Gypsy	-1005	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
207212	chr7	43649501	43650480	+	0	NA	intron (NR_135583, intron 1 of 7)	intron (NR_135583, intron 1 of 7)	66882	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
86040	chr16	57549351	57549450	+	0	NA	intron (NM_153837, intron 1 of 11)	intron (NM_153837, intron 1 of 11)	6757	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
196416	chr6	43393451	43393750	+	0	NA	Intergenic	LTR2|LTR|ERV1	-23953	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
7958	chr1	37673701	37674500	+	0	NA	Intergenic	Intergenic	16429	NM_001350761	54955		NM_017850	ENSG00000116922	AIRIM	C1orf109	AFG2 interacting ribosome maturation factor	protein-coding
210963	chr7	101542821	101543280	+	0	NA	intron (NM_133457, intron 5 of 12)	intron (NM_133457, intron 5 of 12)	25956	NR_103749	100506527		NR_103747	ENSG00000233123	LINC01007	-	long intergenic non-protein coding RNA 1007	ncRNA
109525	chr19	852351	852650	+	0	NA	intron (NM_001972, intron 1 of 4)	intron (NM_001972, intron 1 of 4)	197	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
207983	chr7	55436321	55436580	+	0	NA	Intergenic	Intergenic	71113	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
81644	chr16	10939901	10940280	+	0	NA	intron (NM_014015, intron 1 of 1)	intron (NM_014015, intron 1 of 1)	2378	NM_014015	28955		NM_014015	ENSG00000182108	DEXI	MYLE	Dexi homolog	protein-coding
97071	chr17	42382601	42383230	+	0	NA	intron (NM_001369516, intron 1 of 23)	AluY|SINE|Alu	5527	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
220761	chr8	102400701	102401300	+	0	NA	intron (NM_001282873, intron 1 of 58)	intron (NM_001282873, intron 1 of 58)	-11339	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
188523	chr5	155768421	155768750	+	0	NA	Intergenic	Intergenic	-558579	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
76528	chr15	75108101	75108980	+	0	NA	Intergenic	Intergenic	65254	NM_001301105	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
128706	chr2	61662801	61663730	+	0	NA	Intergenic	L2b|LINE|L2	-124909	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
51996	chr12	53965601	53966330	+	0	NA	non-coding (NR_047518, exon 3 of 4)	non-coding (NR_047518, exon 3 of 4)	2791	NR_003716	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
144043	chr20	33631071	33631230	+	0	NA	intron (NM_001032999, intron 8 of 10)	AluY|SINE|Alu	-31177	NM_080825	128864		NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
25216	chr10	5781401	5781600	+	0	NA	intron (NM_001115156, intron 5 of 9)	AluYk4|SINE|Alu	31934	NM_001494	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
139824	chr2	230413451	230414350	+	0	NA	Intergenic	MER51A|LTR|ERV1	-2256	NM_001206703	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
145445	chr20	43511771	43512300	+	0	NA	intron (NM_001377311, intron 1 of 20)	L2a|LINE|L2	-2406	NR_165195	26013		NM_015478	ENSG00000185513	L3MBTL1	H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3	L3MBTL histone methyl-lysine binding protein 1	protein-coding
214102	chr7	143821201	143822000	+	0	NA	promoter-TSS (NM_001130026)	promoter-TSS (NM_001130026)	-586	NM_001130026	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
178866	chr4	154616771	154616930	+	0	NA	Intergenic	Intergenic	-4042	NM_000509	2266		NM_000509	ENSG00000171557	FGG	-	fibrinogen gamma chain	protein-coding
194613	chr6	33549671	33550150	+	0	NA	Intergenic	Intergenic	30366	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
219246	chr8	67060321	67060580	+	0	NA	intron (NM_006837, intron 1 of 7)	intron (NM_006837, intron 1 of 7)	1683	NM_006837	10987		NM_006837	ENSG00000121022	COPS5	CSN5|JAB1|MOV-34|SGN5	COP9 signalosome subunit 5	protein-coding
96481	chr17	40280271	40280680	+	0	NA	3' UTR (NM_133264, exon 8 of 8)	3' UTR (NM_133264, exon 8 of 8)	-7404	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
23958	chr1	235150801	235151200	+	0	NA	intron (NR_144492, intron 3 of 8)	intron (NR_144492, intron 3 of 8)	10250	NR_027762	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
208832	chr7	73690371	73690530	+	0	NA	intron (NR_045512, intron 5 of 10)	intron (NR_045512, intron 5 of 10)	6853	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
222831	chr8	142502221	142502830	+	0	NA	intron (NM_001702, intron 17 of 30)	(GGT)n|Simple_repeat|Simple_repeat	52876	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
3660	chr1	16409471	16410680	+	0	NA	intron (NM_198546, intron 5 of 12)	intron (NM_198546, intron 5 of 12)	27349	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
195088	chr6	35585851	35586350	+	0	NA	3' UTR (NM_001145777, exon 7 of 7)	3' UTR (NM_001145777, exon 7 of 7)	-73204	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
12164	chr1	100349551	100349850	+	0	NA	intron (NM_001319211, intron 1 of 14)	AluSx1|SINE|Alu	-2767	NM_033313	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
198003	chr6	90085251	90085550	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	190931	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
222516	chr8	140549371	140549730	+	0	NA	intron (NM_012154, intron 11 of 18)	intron (NM_012154, intron 11 of 18)	37554	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
220490	chr8	100499301	100499500	+	0	NA	Intergenic	Intergenic	60359	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
140525	chr2	233232751	233233250	+	0	NA	Intergenic	L2a|LINE|L2	-18571	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
101754	chr17	72560201	72561050	+	0	NA	intron (NR_036488, intron 1 of 3)	intron (NR_036488, intron 1 of 3)	32179	NR_036488	100499467		NR_036488	ENSG00000227036	LINC00673	ERRLR01|HI-LNC75|HILNC75|LUCAIR1|RASON|SLNCR|SLNCR1	long intergenic non-protein coding RNA 673	ncRNA
149556	chr21	33203351	33203450	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	-26495	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
238753	chrX	154340071	154340230	+	0	NA	Intergenic	AluSx4|SINE|Alu	34484	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
102628	chr17	76004551	76004650	+	0	NA	intron (NM_001258, intron 7 of 7)	AluJo|SINE|Alu	3694	NM_001258	1018		NM_001258	ENSG00000250506	CDK3	-	cyclin dependent kinase 3	protein-coding
179434	chr4	184355071	184355470	+	0	NA	Intergenic	Intergenic	-1293	NR_040108	728175		NR_040108	ENSG00000180712	LINC02363	-	long intergenic non-protein coding RNA 2363	ncRNA
152879	chr22	22606721	22606980	+	0	NA	Intergenic	L1MEc|LINE|L1	37691	NR_024591	25812		NM_014348		POM121L1P	POM121L1	POM121 transmembrane nucleoporin like 1, pseudogene	pseudo
60486	chr13	41264671	41264830	+	0	NA	intron (NM_001354073, intron 1 of 14)	MIR|SINE|MIR	-1174	NM_004294	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
9788	chr1	53571201	53571400	+	0	NA	intron (NM_147193, intron 3 of 9)	L1ME3F|LINE|L1	111901	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
163965	chr3	53023021	53023680	+	0	NA	intron (NM_016329, intron 1 of 20)	intron (NM_016329, intron 1 of 20)	22723	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
122080	chr19	48729121	48729530	+	0	NA	exon (NM_017805, exon 5 of 12)	exon (NM_017805, exon 5 of 12)	-9600	NM_001130915	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
37695	chr11	28107611	28109030	+	0	NA	promoter-TSS (NM_152636)	promoter-TSS (NM_152636)	-68	NM_001113528	196074		NM_152636	ENSG00000169519	METTL15	METT5D1	methyltransferase 15, mitochondrial 12S rRNA N4-cytidine	protein-coding
218582	chr8	55815101	55815330	+	0	NA	intron (NM_024831, intron 12 of 12)	intron (NM_024831, intron 12 of 12)	41769	NM_024831	96764		NM_024831	ENSG00000137574	TGS1	NCOA6IP|PIMT|PIPMT	trimethylguanosine synthase 1	protein-coding
98224	chr17	46149801	46150400	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	42682	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
212057	chr7	114977221	114977480	+	0	NA	intron (NM_199072, intron 3 of 4)	MLT1N2|LTR|ERVL-MaLR	55196	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
227716	chr9	93040251	93040350	+	0	NA	Intergenic	Intergenic	-18388	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
190106	chr5	177923321	177923930	+	0	NA	Intergenic	L1ME3G|LINE|L1	-15902	NR_149047	100128340		NR_149047		LOC100128340	-	uncharacterized LOC100128340	ncRNA
189458	chr5	173029121	173029680	+	0	NA	intron (NM_003945, intron 3 of 3)	intron (NM_003945, intron 3 of 3)	8674	NR_002988	677841		NR_002988	ENSG00000212402	SNORA74B	U19-2	small nucleolar RNA, H/ACA box 74B	snoRNA
50764	chr12	49026071	49026230	+	0	NA	intron (NM_003482, intron 49 of 54)	intron (NM_003482, intron 49 of 54)	-7374	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
224769	chr9	21995001	21996500	+	0	NA	promoter-TSS (NM_001363763)	promoter-TSS (NM_001363763)	-426	NM_001363763	1029		NM_000077	ENSG00000147889	CDKN2A	ARF|CAI2|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
155477	chr22	38496201	38496550	+	0	NA	intron (NM_006386, intron 5 of 12)	AluSx|SINE|Alu	9936	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
106175	chr18	10213651	10213750	+	0	NA	Intergenic	Intergenic	200670	NR_110775	101927350		NR_110775	ENSG00000260913	LINC01254	-	long intergenic non-protein coding RNA 1254	ncRNA
211512	chr7	105298051	105299250	+	0	NA	intron (NM_001278273, intron 1 of 16)	intron (NM_001278273, intron 1 of 16)	129	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
86611	chr16	67388901	67389100	+	0	NA	TTS (NM_015964)	TTS (NM_015964)	4498	NM_015964	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
37660	chr11	22787521	22787880	+	0	NA	intron (NM_001351224, intron 8 of 8)	intron (NM_001351224, intron 8 of 8)	41679	NR_135213	258010		NM_148893	ENSG00000198168	SVIP	-	small VCP interacting protein	protein-coding
33346	chr10	117131951	117132050	+	0	NA	3' UTR (NM_199131, exon 4 of 4)	3' UTR (NM_199131, exon 4 of 4)	-5414	NM_001258300	57698		NM_018330	ENSG00000187164	SHTN1	KIAA1598|shootin-1	shootin 1	protein-coding
222337	chr8	133529771	133530150	+	0	NA	intron (NM_173344, intron 2 of 9)	L2a|LINE|L2	41927	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
70477	chr14	102077311	102077880	+	0	NA	Intergenic	Intergenic	9449	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
191839	chr6	15022901	15023900	+	0	NA	Intergenic	MIR|SINE|MIR	-222669	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
233115	chr9	137134201	137134850	+	0	NA	Intergenic	AluJb|SINE|Alu	-4629	NM_007327	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
100556	chr17	62628321	62629100	+	0	NA	intron (NM_006039, intron 1 of 29)	intron (NM_006039, intron 1 of 29)	1040	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
58747	chr12	132607851	132608150	+	0	NA	intron (NM_001195520, intron 1 of 5)	(TCTCTG)n|Simple_repeat|Simple_repeat	2582	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
43324	chr11	76379271	76379530	+	0	NA	intron (NM_004705, intron 1 of 4)	L2a|LINE|L2	1565	NR_130898	5612		NM_004705	ENSG00000137492	THAP12	DAP4|P52rIPK|PRKRIR|THAP0	THAP domain containing 12	protein-coding
182432	chr5	62256121	62256930	+	0	NA	Intergenic	Intergenic	-49637	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
8530	chr1	41016301	41016880	+	0	NA	non-coding (NR_037868, exon 1 of 4)	non-coding (NR_037868, exon 1 of 4)	2000	NR_037868	100507178		NR_037868	ENSG00000281207	SLFNL1-AS1	-	SLFNL1 antisense RNA 1	ncRNA
108202	chr18	63132221	63132480	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	187419	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
122201	chr19	48957071	48957430	+	0	NA	intron (NM_001291428, intron 4 of 5)	L2b|LINE|L2	2375	NM_138761	581		NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
112254	chr19	5785451	5785550	+	0	NA	promoter-TSS (NM_001134316)	promoter-TSS (NM_001134316)	-754	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
45888	chr11	120210421	120211930	+	0	NA	5' UTR (NM_178507, exon 1 of 4)	5' UTR (NM_178507, exon 1 of 4)	143	NM_178507	220323		NM_178507	ENSG00000184232	OAF	NS5ATP13TP2	out at first homolog	protein-coding
135523	chr2	162073541	162074680	+	0	NA	promoter-TSS (NR_147697)	promoter-TSS (NR_147697)	105	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
163851	chr3	52484451	52484980	+	0	NA	intron (NM_007184, intron 14 of 20)	intron (NM_007184, intron 14 of 20)	-10623	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
197289	chr6	71228551	71229600	+	0	NA	Intergenic	Intergenic	-59736	NM_001324266	79627		NM_024576	ENSG00000119900	OGFRL1	dJ331H24.1	opioid growth factor receptor like 1	protein-coding
205070	chr7	6621021	6621930	+	0	NA	exon (NM_017560, exon 3 of 3)	exon (NM_017560, exon 3 of 3)	5865	NM_001353546	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
238654	chrX	154012401	154012900	+	0	NA	exon (NM_001025243, exon 12 of 13)	exon (NM_001025243, exon 12 of 13)	7252	NM_001025242	3654		NM_001569	ENSG00000184216	IRAK1	IRAK|pelle	interleukin 1 receptor associated kinase 1	protein-coding
115571	chr19	15813821	15814330	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-5949	NM_013940	26539		NM_013940	ENSG00000186723	OR10H1	-	olfactory receptor family 10 subfamily H member 1	protein-coding
10581	chr1	67341651	67341750	+	0	NA	intron (NM_001374259, intron 9 of 16)	intron (NM_001374259, intron 9 of 16)	33827	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
101653	chr17	68262721	68263500	+	0	NA	intron (NM_014960, intron 1 of 11)	intron (NM_014960, intron 1 of 11)	3928	NM_001352904	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
105918	chr18	3453521	3454300	+	0	NA	intron (NM_173211, intron 1 of 2)	intron (NM_173211, intron 1 of 2)	136	NM_173211	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
187846	chr5	147453551	147454150	+	0	NA	promoter-TSS (NM_001387)	promoter-TSS (NM_001387)	-158	NM_001387	1809		NM_001387	ENSG00000113657	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase like 3	protein-coding
229486	chr9	122160751	122161000	+	0	NA	intron (NM_001286828, intron 1 of 3)	intron (NM_001286828, intron 1 of 3)	967	NM_001286828	254956		NM_198469	ENSG00000185681	MORN5	C9orf113|C9orf18	MORN repeat containing 5	protein-coding
65578	chr14	51995401	51995600	+	0	NA	intron (NM_016039, intron 3 of 7)	MLT1D|LTR|ERVL-MaLR	5954	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
31117	chr10	89337521	89337930	+	0	NA	intron (NM_001289759, intron 2 of 2)	intron (NM_001289759, intron 2 of 2)	5196	NM_001289759	3437		NM_001549	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41	interferon induced protein with tetratricopeptide repeats 3	protein-coding
130443	chr2	85420521	85421600	+	0	NA	intron (NM_201594, intron 1 of 20)	intron (NM_201594, intron 1 of 20)	2129	NM_201594								
45181	chr11	117313371	117313530	+	0	NA	intron (NM_138972, intron 1 of 8)	AluSq2|SINE|Alu	2806	NM_138972	23621		NM_012104	ENSG00000186318	BACE1	ASP2|BACE|HSPC104	beta-secretase 1	protein-coding
41189	chr11	65635171	65636050	+	0	NA	promoter-TSS (NR_039839)	promoter-TSS (NR_039839)	-700	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
217159	chr8	26287371	26287930	+	0	NA	Intergenic	Intergenic	-3858	NM_002717	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
170231	chr3	184184701	184184900	+	0	NA	TTS (NM_001311198)	TTS (NM_001311198)	-1275	NM_018358	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
167333	chr3	128745421	128746130	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	19592	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
136358	chr2	176083651	176083950	+	0	NA	5' UTR (NM_001080458, exon 1 of 3)	5' UTR (NM_001080458, exon 1 of 3)	162	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
144376	chr20	35098451	35098850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5835	NM_199368	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
238904	chrX	154645621	154646530	+	0	NA	Intergenic	Intergenic	7504	NM_172377	30848		NM_020994	ENSG00000126890	CTAG2	CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B	cancer/testis antigen 2	protein-coding
23241	chr1	227787221	227789500	+	0	NA	promoter-TSS (NR_168384)	promoter-TSS (NR_168384)	-160	NR_168385	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
101903	chr17	74431271	74431430	+	0	NA	promoter-TSS (NM_001366261)	promoter-TSS (NM_001366261)	-738	NM_001366262	55890		NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding
216749	chr8	22463201	22463400	+	0	NA	intron (NM_005605, intron 1 of 13)	LTR37-int|LTR|ERV1	22222	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
82628	chr16	18955921	18956400	+	0	NA	Intergenic	LTR9A1|LTR|ERV1	-27774	NM_001300732	79905		NM_024847	ENSG00000170537	TMC7	-	transmembrane channel like 7	protein-coding
17525	chr1	156773001	156773200	+	0	NA	intron (NM_005973, intron 1 of 6)	intron (NM_005973, intron 1 of 6)	5565	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
26565	chr10	21724701	21725200	+	0	NA	intron (NR_136736, intron 17 of 25)	intron (NR_136736, intron 17 of 25)	190718	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
116623	chr19	18291201	18293800	+	0	NA	Intergenic	CpG	10423	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
68558	chr14	89376671	89377380	+	0	NA	intron (NM_001085471, intron 2 of 6)	AluSx1|SINE|Alu	40208	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
97803	chr17	44777601	44778000	+	0	NA	exon (NM_002390, exon 23 of 27)	exon (NM_002390, exon 23 of 27)	18812	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
203611	chr7	945721	945980	+	0	NA	promoter-TSS (NM_001284309)	promoter-TSS (NM_001284309)	-34	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
176925	chr4	102819271	102819990	+	0	NA	intron (NM_181893, intron 1 of 6)	intron (NM_181893, intron 1 of 6)	6230	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
148171	chr20	63533551	63534080	+	0	NA	intron (NM_005975, intron 3 of 7)	intron (NM_005975, intron 3 of 7)	3555	NM_001256358	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
136671	chr2	180979921	180982180	+	0	NA	promoter-TSS (NM_001278554)	promoter-TSS (NM_001278554)	-74	NM_001278554	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
26590	chr10	22129301	22129630	+	0	NA	Intergenic	L1PA2|LINE|L1	80518	NM_001199938	340900		NM_001199938	ENSG00000223601	EBLN1	EBLN-1	endogenous Bornavirus like nucleoprotein 1	protein-coding
158170	chr22	50212451	50214180	+	0	NA	intron (NM_031454, intron 5 of 8)	AluSz|SINE|Alu	12304	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
109341	chr19	608651	609280	+	0	NA	intron (NM_001194, intron 4 of 7)	intron (NM_001194, intron 4 of 7)	19084	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
219279	chr8	67540551	67540930	+	0	NA	intron (NM_020361, intron 2 of 10)	L1PA7|LINE|L1	196906	NR_136224	102724708		NR_136223		ARFGEF1-DT	-	ARFGEF1 divergent transcript	ncRNA
167039	chr3	126539351	126539650	+	0	NA	intron (NM_152889, intron 2 of 2)	(AC)n|Simple_repeat|Simple_repeat	15345	NM_152889	166012		NM_152889	ENSG00000180767	CHST13	C4ST3	carbohydrate sulfotransferase 13	protein-coding
172016	chr4	971751	972300	+	0	NA	intron (NM_001347, intron 1 of 22)	intron (NM_001347, intron 1 of 22)	1544	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
227133	chr9	86268751	86269050	+	0	NA	intron (NM_030940, intron 3 of 3)	AluSx3|SINE|Alu	-9243	NM_001276367	389766		NM_001010907	ENSG00000187753	C9orf153	bA507D14.1	chromosome 9 open reading frame 153	protein-coding
98712	chr17	47969371	47969600	+	0	NA	Intergenic	AluY|SINE|Alu	-1043	NM_001278197	80279		NM_025197	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding
193447	chr6	30490001	30490790	+	0	NA	exon (NM_005516, exon 3 of 8)	exon (NM_005516, exon 3 of 8)	886	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
224835	chr9	27333151	27333500	+	0	NA	intron (NM_024761, intron 3 of 3)	intron (NM_024761, intron 3 of 3)	-36175	NM_020641	54586		NM_020641	ENSG00000120160	EQTN	AFAF|C9orf11|SPACA8	equatorin	protein-coding
85383	chr16	50283451	50283850	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	-8966	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
63410	chr13	114081001	114081580	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-3335	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
161585	chr3	43013301	43014700	+	0	NA	intron (NM_001129908, intron 1 of 4)	intron (NM_001129908, intron 1 of 4)	34689	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
150875	chr21	44122151	44122450	+	0	NA	exon (NM_001368238, exon 14 of 21).2	exon (NM_001368238, exon 14 of 21).2	-11383	NR_135220	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
191765	chr6	14108651	14109380	+	0	NA	Intergenic	Intergenic	-8241	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
116724	chr19	18455501	18455700	+	0	NA	intron (NM_006532, intron 6 of 11)	AluSz|SINE|Alu	-17467	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
118048	chr19	34257901	34258100	+	0	NA	intron (NM_014686, intron 1 of 13)	AluSx|SINE|Alu	3446	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
150340	chr21	42123101	42123500	+	0	NA	intron (NM_173568, intron 16 of 21)	intron (NM_173568, intron 16 of 21)	-14766	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
140341	chr2	232605551	232606650	+	0	NA	promoter-TSS (NM_001243252)	promoter-TSS (NM_001243252)	43	NM_001243252	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
147729	chr20	62390251	62390550	+	0	NA	3' UTR (NM_031215, exon 10 of 10)	3' UTR (NM_031215, exon 10 of 10)	3297	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
162137	chr3	46951751	46952500	+	0	NA	intron (NM_144716, intron 2 of 7)	L2c|LINE|L2	24376	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
38607	chr11	46318271	46319080	+	0	NA	intron (NM_052854, intron 10 of 11)	intron (NM_052854, intron 10 of 11)	-14251	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
168515	chr3	143849851	143850300	+	0	NA	Intergenic	Intergenic	-1607	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
69664	chr14	98010721	98011350	+	0	NA	Intergenic	Intergenic	-32911	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
28716	chr10	61867321	61868400	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-33839	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
114426	chr19	12676171	12677680	+	0	NA	intron (NR_161467, intron 6 of 7)	L2a|LINE|L2	4286	NM_001206974	1725		NM_001930	ENSG00000095059	DHPS	DHS|DS|MIG13|NEDSSWI	deoxyhypusine synthase	protein-coding
133781	chr2	127699451	127699980	+	0	NA	Intergenic	L1MB3|LINE|L1	-1782	NM_032740	84826		NM_032740	ENSG00000173349	SFT2D3	-	SFT2 domain containing 3	protein-coding
64601	chr14	30474301	30474630	+	0	NA	intron (NR_151720, intron 3 of 3)	L1PA3|LINE|L1	-84658	NM_001308097	55632		NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
80857	chr16	3549521	3549780	+	0	NA	intron (NM_178844, intron 12 of 19)	intron (NM_178844, intron 12 of 19)	27753	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
92979	chr17	17124821	17126630	+	0	NA	intron (NM_015134, intron 3 of 22)	intron (NM_015134, intron 3 of 22)	80608	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
174167	chr4	36279701	36279900	+	0	NA	Intergenic	Intergenic	-1816	NM_001136536	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
43968	chr11	93751471	93751630	+	0	NA	intron (NM_001351990, intron 3 of 8)	AluSc8|SINE|Alu	5107	NM_001369406	28970		NM_014039	ENSG00000182919	C11orf54	MEEP|PTD012|PTOD012	chromosome 11 open reading frame 54	protein-coding
90705	chr17	1773221	1773680	+	0	NA	intron (NM_001329905, intron 1 of 3)	AluSx1|SINE|Alu	1779	NM_001329905	5176		NM_002615	ENSG00000132386	SERPINF1	EPC-1|OI12|OI6|PEDF|PIG35	serpin family F member 1	protein-coding
32209	chr10	101782171	101782350	+	0	NA	exon (NM_006993, exon 4 of 6)	exon (NM_006993, exon 4 of 6)	1153	NM_006993	10360		NM_006993	ENSG00000107833	NPM3	PORMIN|TMEM123	nucleophosmin/nucleoplasmin 3	protein-coding
201302	chr6	144348201	144348500	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	56613	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
213263	chr7	134635821	134636310	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-10714	NM_001293085	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
49032	chr12	14374301	14374950	+	0	NA	intron (NM_001286515, intron 1 of 12)	intron (NM_001286515, intron 1 of 12)	8943	NM_001286515	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
108300	chr18	63362601	63363000	+	0	NA	exon (NM_002035, exon 2 of 10)	exon (NM_002035, exon 2 of 10)	4406	NM_002035	2531		NM_002035	ENSG00000119537	KDSR	DHSR|EKVP4|FVT1|SDR35C1	3-ketodihydrosphingosine reductase	protein-coding
26663	chr10	22606101	22606780	+	0	NA	intron (NM_001330062, intron 3 of 9)	intron (NM_001330062, intron 3 of 9)	107668	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
233054	chr9	137068951	137069050	+	0	NA	intron (NM_178448, intron 1 of 5)	intron (NM_178448, intron 1 of 5)	1557	NM_178448	89958		NM_178448	ENSG00000186193	SAPCD2	C9orf140|p42.3	suppressor APC domain containing 2	protein-coding
73769	chr15	45573921	45574350	+	0	NA	Intergenic	MER52A|LTR|ERV1	-12988	NR_132354	26258		NM_012388	ENSG00000104164	BLOC1S6	BLOS6|HPS9|PA|PALLID|PLDN	biogenesis of lysosomal organelles complex 1 subunit 6	protein-coding
35151	chr11	735371	737030	+	0	NA	Intergenic	CpG	-11264	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
31159	chr10	90871121	90872450	+	0	NA	promoter-TSS (NM_001104546)	promoter-TSS (NM_001104546)	-189	NM_001104546	10556		NM_006413	ENSG00000148688	RPP30	TSG15	ribonuclease P/MRP subunit p30	protein-coding
145110	chr20	38776341	38777030	+	0	NA	Intergenic	Intergenic	28225	NM_024855	79913		NM_024855	ENSG00000101442	ACTR5	Arp5|INO80M	actin related protein 5	protein-coding
179482	chr4	184536051	184536250	+	0	NA	intron (NR_147158, intron 1 of 2)	L2a|LINE|L2	1433	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
8586	chr1	41384621	41384950	+	0	NA	Intergenic	L2c|LINE|L2	-9116	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
13067	chr1	111476781	111478050	+	0	NA	exon (NM_001300834, exon 4 of 6)	exon (NM_001300834, exon 4 of 6)	3431	NM_001300834	128346		NM_174896	ENSG00000143110	C1orf162	-	chromosome 1 open reading frame 162	protein-coding
188461	chr5	154640351	154640450	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-42579	NM_001367715	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
165792	chr3	105802301	105802830	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	65026	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
218534	chr8	53877021	53877350	+	0	NA	intron (NM_001286674, intron 1 of 2)	CpG	-3687	NR_104579	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
119288	chr19	39766471	39767080	+	0	NA	Intergenic	Intergenic	-9678	NM_001143832	342900		NM_001143832	ENSG00000213921	LEUTX	-	leucine twenty homeobox	protein-coding
237803	chrX	129929621	129930280	+	0	NA	TTS (NM_006649)	TTS (NM_006649)	23786	NM_006649	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
7846	chr1	36344321	36344580	+	0	NA	intron (NM_032017, intron 8 of 11)	intron (NM_032017, intron 8 of 11)	-20296	NM_018166	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
35858	chr11	2374821	2375180	+	0	NA	intron (NR_108080, intron 1 of 2)	intron (NR_108080, intron 1 of 2)	-1177	NM_001297649	975		NM_004356	ENSG00000110651	CD81	CVID6|S5.7|TAPA1|TSPAN28	CD81 molecule	protein-coding
188790	chr5	157855171	157856080	+	0	NA	intron (NM_001195556, intron 1 of 11)	intron (NM_001195556, intron 1 of 11)	3520	NM_014666	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
83903	chr16	28989871	28990030	+	0	NA	exon (NM_001014989, exon 12 of 13)	exon (NM_001014989, exon 12 of 13)	4898	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
73538	chr15	43828971	43829130	+	0	NA	intron (NM_024908, intron 2 of 12)	AluSg|SINE|Alu	2048	NM_001167941	79968		NM_024908	ENSG00000092470	WDR76	CDW14|CMR1	WD repeat domain 76	protein-coding
155111	chr22	37612951	37613330	+	0	NA	5' UTR (NM_001172688, exon 2 of 18)	5' UTR (NM_001172688, exon 2 of 18)	4100	NM_001172688	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
115191	chr19	14451471	14451630	+	0	NA	intron (NM_002741, intron 6 of 21)	intron (NM_002741, intron 6 of 21)	11273	NM_213560	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
136894	chr2	189439051	189439650	+	0	NA	Intergenic	L2a|LINE|L2	-2083	NM_001303096	84128		NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
225743	chr9	37040571	37041350	+	0	NA	Intergenic	Intergenic	-6692	NM_001280556	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
113960	chr19	10773951	10774250	+	0	NA	intron (NM_001005362, intron 3 of 19)	intron (NM_001005362, intron 3 of 19)	-6154	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
215941	chr8	8340251	8341150	+	0	NA	intron (NM_001369759, intron 3 of 5)	intron (NM_001369759, intron 3 of 5)	45544	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
62483	chr13	99388851	99388950	+	0	NA	Intergenic	Intergenic	32769	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
185813	chr5	132442221	132443030	+	0	NA	intron (NR_161242, intron 2 of 3)	MER5A|DNA|hAT-Charlie	31696	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
18165	chr1	160790851	160790950	+	0	NA	Intergenic	L2a|LINE|L2	-5274	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
182484	chr5	62403171	62404680	+	0	NA	promoter-TSS (NM_014473)	promoter-TSS (NM_014473)	-20	NM_001348077	27292		NM_014473	ENSG00000086189	DIMT1	DIM1|DIMT1L|HSA9761|HUSSY5	DIM1 rRNA methyltransferase and ribosome maturation factor	protein-coding
234105	chrX	9457771	9458700	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5060	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
177712	chr4	122150351	122150450	+	0	NA	Intergenic	L1MD1|LINE|L1	-1931	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
106595	chr18	22204051	22204190	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	34531	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
120915	chr19	45636921	45637180	+	0	NA	intron (NR_147903, intron 6 of 19)	intron (NR_147903, intron 6 of 19)	2037	NR_029886	442902		NR_029886	ENSG00000284544	MIR330	MIRN330|hsa-mir-330|mir-330	microRNA 330	ncRNA
66270	chr14	61370171	61370930	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	49107	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
42029	chr11	67431871	67432050	+	0	NA	intron (NM_003952, intron 5 of 14)	intron (NM_003952, intron 5 of 14)	3466	NM_003952	6199		NM_003952	ENSG00000175634	RPS6KB2	KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb	ribosomal protein S6 kinase B2	protein-coding
225644	chr9	36382801	36384030	+	0	NA	intron (NM_194332, intron 1 of 10)	AluSc|SINE|Alu	16854	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
203259	chr6	169584001	169584400	+	0	NA	intron (NR_146875, intron 18 of 20)	L1MA9|LINE|L1	117829	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
197937	chr6	89828901	89830600	+	0	NA	promoter-TSS (NM_001137667)	promoter-TSS (NM_001137667)	-130	NM_001137667	9994		NM_012115	ENSG00000118412	CASP8AP2	CED-4|FLASH|RIP25	caspase 8 associated protein 2	protein-coding
181808	chr5	52724821	52726000	+	0	NA	Intergenic	Intergenic	-62506	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
133257	chr2	113388801	113389200	+	0	NA	Intergenic	L2c|LINE|L2	-48691	NM_001330340	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
18190	chr1	160837301	160838230	+	0	NA	intron (NM_001166664, intron 4 of 7)	intron (NM_001166664, intron 4 of 7)	25122	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
147268	chr20	57464851	57465150	+	0	NA	Intergenic	MIRb|SINE|MIR	59867	NM_001269052	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
14634	chr1	145468921	145469200	+	0	NA	Intergenic	Intergenic	-63282	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
24747	chr1	248751151	248751450	+	0	NA	intron (NM_001291283, intron 1 of 5)	intron (NM_001291283, intron 1 of 5)	4459	NM_001085474	646627		NM_001085474	ENSG00000259823	LYPD8	-	LY6/PLAUR domain containing 8	protein-coding
132369	chr2	105761971	105763230	+	0	NA	intron (NM_001004722, intron 1 of 3)	Charlie4a|DNA|hAT-Charlie	17537	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
202367	chr6	157769301	157769850	+	0	NA	Intergenic	L2c|LINE|L2	-53671	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
209508	chr7	76966351	76966900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-14197	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
123493	chr19	54196351	54196650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4358	NM_001321701	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
204739	chr7	5566951	5567450	+	0	NA	Intergenic	AluYc|SINE|Alu	-25616	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
134737	chr2	144595971	144596930	+	0	NA	Intergenic	Intergenic	-71517	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
43172	chr11	75382801	75383630	+	0	NA	Intergenic	AluJr4|SINE|Alu	-16276	NM_001260507	6188		NM_001005	ENSG00000149273	RPS3	S3|uS3	ribosomal protein S3	protein-coding
16951	chr1	155928901	155929330	+	0	NA	intron (NM_014949, intron 4 of 13)	intron (NM_014949, intron 4 of 13)	-3029	NR_003005	677771		NR_003005	ENSG00000281394	SCARNA4	ACA26	small Cajal body-specific RNA 4	ncRNA
113648	chr19	10357171	10357330	+	0	NA	intron (NM_001385207, intron 17 of 24)	AluSq2|SINE|Alu	-17626	NM_002162	3385		NM_002162	ENSG00000076662	ICAM3	CD50|CDW50|ICAM-R	intercellular adhesion molecule 3	protein-coding
51918	chr12	53694151	53694600	+	0	NA	Intergenic	Intergenic	-18045	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
80819	chr16	3467701	3468330	+	0	NA	intron (NM_001317095, intron 1 of 5)	MER51A|LTR|ERV1	9970	NM_001317097	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
183997	chr5	90518701	90519000	+	0	NA	exon (NM_198273, exon 3 of 3)	exon (NM_198273, exon 3 of 3)	10734	NM_198273	116068		NM_198273	ENSG00000176018	LYSMD3	-	LysM domain containing 3	protein-coding
122919	chr19	50656951	50657250	+	0	NA	intron (NM_001195076, intron 3 of 4)	intron (NM_001195076, intron 3 of 4)	7655	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
204865	chr7	5833941	5835030	+	0	NA	intron (NR_023382, intron 2 of 6)	intron (NR_023382, intron 2 of 6)	11325	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
156305	chr22	40533571	40535930	+	0	NA	promoter-TSS (NM_001318139)	promoter-TSS (NM_001318139)	-923	NM_001318139	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
25298	chr10	6198501	6198700	+	0	NA	intron (NM_001282630, intron 1 of 14)	AluSz6|SINE|Alu	-4332	NM_001363545	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
148417	chr20	63953651	63953750	+	0	NA	non-coding (NR_027287, exon 1 of 1)	non-coding (NR_027287, exon 1 of 1)	316	NR_027287	100113386		NR_027287	ENSG00000280213	UCKL1-AS1	UCKL1-AS|UCKL1AS|UCKL1OS	UCKL1 antisense RNA 1	ncRNA
150242	chr21	41374051	41374600	+	0	NA	intron (NM_002463, intron 1 of 13)	intron (NM_002463, intron 1 of 13)	12298	NM_002463	4600		NM_002463	ENSG00000183486	MX2	MXB	MX dynamin like GTPase 2	protein-coding
37593	chr11	19564071	19564550	+	0	NA	intron (NM_001111018, intron 2 of 38)	intron (NM_001111018, intron 2 of 38)	-11000	NR_039706	100616118		NR_039706	ENSG00000265210	MIR4486	-	microRNA 4486	ncRNA
118767	chr19	38380371	38381000	+	0	NA	intron (NM_002812, intron 4 of 6)	GA-rich|Low_complexity|Low_complexity	6114	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
130365	chr2	85079921	85080050	+	0	NA	Intergenic	AluY|SINE|Alu	-12638	NR_146453	100996478		NR_146453	ENSG00000260840	LINC01964	-	long intergenic non-protein coding RNA 1964	ncRNA
147296	chr20	57634101	57634730	+	0	NA	Intergenic	L1MC3|LINE|L1	-13989	NM_001160419	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
224228	chr9	5671671	5672260	+	0	NA	intron (NM_001206557, intron 2 of 24)	intron (NM_001206557, intron 2 of 24)	42846	NM_001206557	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
77245	chr15	81301751	81302250	+	0	NA	intron (NM_172217, intron 15 of 18)	intron (NM_172217, intron 15 of 18)	5030	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
201200	chr6	143449221	143450000	+	0	NA	intron (NM_182503, intron 1 of 5)	Tigger3c|DNA|TcMar-Tigger	1085	NM_182503	134637		NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase tRNA specific 2	protein-coding
132063	chr2	101251501	101254350	+	0	NA	promoter-TSS (NM_017546)	promoter-TSS (NM_017546)	39	NM_017546	55571		NM_017546	ENSG00000158435	CNOT11	C2orf29|C40	CCR4-NOT transcription complex subunit 11	protein-coding
8398	chr1	40395771	40395930	+	0	NA	promoter-TSS (NM_001198980)	promoter-TSS (NM_001198980)	-950	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
141487	chr2	241098771	241099150	+	0	NA	intron (NR_028050, intron 1 of 4)	intron (NR_028050, intron 1 of 4)	3327	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
219318	chr8	70144851	70145150	+	0	NA	intron (NM_001321713, intron 11 of 21)	intron (NM_001321713, intron 11 of 21)	-73748	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
91736	chr17	6669851	6669950	+	0	NA	Intergenic	Intergenic	12181	NR_045985	100652883		NR_045985		ALOX15P1	ALOX15P	arachidonate 15-lipoxygenase pseudogene 1	pseudo
90038	chr16	89908521	89909150	+	0	NA	intron (NM_014972, intron 16 of 17)	intron (NM_014972, intron 16 of 17)	-10027	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
63311	chr13	113995821	113997230	+	0	NA	intron (NM_001320822, intron 21 of 23).2	intron (NM_001320822, intron 21 of 23).2	-22449	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
208011	chr7	55559051	55559730	+	0	NA	intron (NM_001321243, intron 1 of 5)	intron (NM_001321243, intron 1 of 5)	-5503	NM_001321248	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
222012	chr8	130049121	130050280	+	0	NA	Intergenic	Intergenic	-32571	NM_001353269	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
158590	chr3	4750171	4750650	+	0	NA	intron (NR_004428, intron 1 of 1)	intron (NR_004428, intron 1 of 1)	1180	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
204951	chr7	6348401	6349400	+	0	NA	promoter-TSS (NM_001037163)	promoter-TSS (NM_001037163)	67	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
118510	chr19	35963571	35963800	+	0	NA	non-coding (NR_136525, exon 5 of 5)	non-coding (NR_136525, exon 5 of 5)	16570	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
125629	chr2	19355651	19356280	+	0	NA	intron (NM_145260, intron 1 of 2)	intron (NM_145260, intron 1 of 2)	2658	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
97363	chr17	43305221	43305980	+	0	NA	Intergenic	AluY|SINE|Alu	-5369	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
38878	chr11	47375721	47376380	+	0	NA	intron (NM_001080547, intron 1 of 4)	intron (NM_001080547, intron 1 of 4)	2497	NM_003120	6688		NM_003120	ENSG00000066336	SPI1	AGM10|OF|PU.1|SFPI1|SPI-1|SPI-A	Spi-1 proto-oncogene	protein-coding
190253	chr5	178729771	178731380	+	0	NA	promoter-TSS (NM_001324339)	promoter-TSS (NM_001324339)	84	NM_001324339	6940		NM_005649	ENSG00000169131	ZNF354A	EZNF|HEL104|HKL1|KID-1|KID1|TCF17	zinc finger protein 354A	protein-coding
6240	chr1	27538301	27538500	+	0	NA	intron (NM_001029882, intron 6 of 6)	AluSz|SINE|Alu	-48233	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
78720	chr15	98646951	98647800	+	0	NA	non-coding (NR_126453, exon 1 of 1)	non-coding (NR_126453, exon 1 of 1)	-1164	NM_001291858	3480		NM_000875	ENSG00000140443	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin like growth factor 1 receptor	protein-coding
54716	chr12	93467121	93468280	+	0	NA	intron (NR_038161, intron 1 of 6)	CpG	186	NR_038160	28977		NM_014050	ENSG00000198015	MRPL42	HSPC204|L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT|mL42	mitochondrial ribosomal protein L42	protein-coding
167528	chr3	129304451	129305050	+	0	NA	exon (NM_001363881, exon 6 of 6)	exon (NM_001363881, exon 6 of 6)	-11521	NR_026991	339942		NM_001025468		H1-10-AS1	C3orf47|H1FX-AS1	H1-10 antisense RNA 1	ncRNA
74186	chr15	55587851	55588550	+	0	NA	5' UTR (NM_001367806, exon 1 of 3)	5' UTR (NM_001367806, exon 1 of 3)	145	NM_001330326	26108		NM_015617	ENSG00000171016	PYGO1	-	pygopus family PHD finger 1	protein-coding
111669	chr19	4253751	4253850	+	0	NA	intron (NM_018074, intron 3 of 7)	intron (NM_018074, intron 3 of 7)	6720	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
221557	chr8	124997771	125000480	+	0	NA	promoter-TSS (NR_134457)	promoter-TSS (NR_134457)	620	NM_003129	6713		NM_003129	ENSG00000104549	SQLE	-	squalene epoxidase	protein-coding
94289	chr17	28723301	28723500	+	0	NA	promoter-TSS (NR_000014)	promoter-TSS (NR_000014)	-29	NR_000014	26809		NR_000014	ENSG00000238649	SNORD42A	RNU42A|U42|U42A	small nucleolar RNA, C/D box 42A	snoRNA
56432	chr12	113362621	113363000	+	0	NA	intron (NM_173542, intron 1 of 11)	AluSx|SINE|Alu	4223	NM_173542	196463		NM_173542	ENSG00000151176	PLBD2	P76	phospholipase B domain containing 2	protein-coding
14353	chr1	144009201	144009600	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-35881	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
19746	chr1	181317351	181317650	+	0	NA	Intergenic	Intergenic	81112	NR_046249	100287948		NR_046249	ENSG00000179452	LINC01699	GM140	long intergenic non-protein coding RNA 1699	ncRNA
49345	chr12	22130701	22130900	+	0	NA	Intergenic	L2c|LINE|L2	84582	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
204601	chr7	5327451	5328150	+	0	NA	intron (NM_001080495, intron 19 of 29)	intron (NM_001080495, intron 19 of 29)	44857	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
42197	chr11	67998051	67998750	+	0	NA	exon (NM_030930, exon 6 of 11)	exon (NM_030930, exon 6 of 11)	5697	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
64177	chr14	22956521	22957880	+	0	NA	promoter-TSS (NR_039856)	promoter-TSS (NR_039856)	-58	NM_001166269	54930		NM_017815	ENSG00000092036	HAUS4	C14orf94	HAUS augmin like complex subunit 4	protein-coding
71923	chr15	22796701	22797600	+	0	NA	intron (NM_144599, intron 1 of 4)	AluSz6|SINE|Alu	10506	NM_144599	123606		NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
38171	chr11	36321451	36321950	+	0	NA	intron (NM_001160167, intron 1 of 8)	MLT1B|LTR|ERVL-MaLR	25412	NM_001160167	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
56254	chr12	112000571	112001830	+	0	NA	intron (NM_138341, intron 2 of 9)	intron (NM_138341, intron 2 of 9)	11965	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
201081	chr6	142798151	142798450	+	0	NA	intron (NM_006734, intron 2 of 9)	(AAAAG)n|Simple_repeat|Simple_repeat	146876	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
71892	chr15	22493571	22493730	+	0	NA	Intergenic	AluJb|SINE|Alu	-1187	NR_002824	400322		NM_001024681	ENSG00000291003	HERC2P2	D15F37S3|MN7	HERC2 pseudogene 2	pseudo
111580	chr19	4075271	4075980	+	0	NA	Intergenic	L1MB7|LINE|L1	-8726	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
21732	chr1	206794571	206794950	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-22266	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
212700	chr7	129774271	129774630	+	0	NA	TTS (NR_029615)	TTS (NR_029615)	319	NR_029512	407053		NR_029512	ENSG00000199158	MIR96	DFNA50|MIRN96|hsa-mir-96|miR-96|miRNA96	microRNA 96	ncRNA
135338	chr2	160387951	160388050	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	19882	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
95043	chr17	32515521	32516380	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	28957	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
94938	chr17	32060421	32061150	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	20449	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
207163	chr7	43595971	43596130	+	0	NA	exon (NM_004760, exon 2 of 7)	exon (NM_004760, exon 2 of 7)	12942	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
17623	chr1	157043501	157043900	+	0	NA	intron (NM_001377418, intron 1 of 40)	intron (NM_001377418, intron 1 of 40)	2042	NM_001377419	9826		NM_014784	ENSG00000132694	ARHGEF11	GTRAP48|PDZ-RHOGEF	Rho guanine nucleotide exchange factor 11	protein-coding
234564	chrX	19741501	19742250	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	57898	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
148591	chr21	5103471	5104630	+	0	NA	TTS (NR_146631)	TTS (NR_146631)	1990	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
210183	chr7	98811101	98811510	+	0	NA	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	58709	NM_152913	222865		NM_152913	ENSG00000166448	TMEM130	-	transmembrane protein 130	protein-coding
26009	chr10	12195541	12196930	+	0	NA	promoter-TSS (NM_001321648)	promoter-TSS (NM_001321648)	47	NM_006023	8872		NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
92672	chr17	11998621	11998950	+	0	NA	Intergenic	L3|LINE|CR1	-1275	NM_001303282	7566		NM_144680	ENSG00000154957	ZNF18	HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535	zinc finger protein 18	protein-coding
46653	chr11	128700801	128701180	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-4967	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
211016	chr7	102390621	102391700	+	0	NA	intron (NR_038967, intron 4 of 8)	MIR|SINE|MIR	-5203	NM_024653	79706		NM_024653	ENSG00000128563	PRKRIP1	C114|KRBOX3	PRKR interacting protein 1	protein-coding
200609	chr6	136760651	136760980	+	0	NA	intron (NM_005923, intron 1 of 29)	AluSx|SINE|Alu	-23232	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
130607	chr2	85900421	85900880	+	0	NA	Intergenic	L1ME3A|LINE|L1	11370	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
44085	chr11	95697801	95698280	+	0	NA	Intergenic	L2c|LINE|L2	91742	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
64379	chr14	24143951	24144250	+	0	NA	promoter-TSS (NR_106990)	promoter-TSS (NR_106990)	-535	NR_106990	102465801		NR_106990	ENSG00000283856	MIR7703	hsa-mir-7703	microRNA 7703	ncRNA
42399	chr11	68999421	68999680	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-12804	NR_120541	101928200		NR_120541	ENSG00000256508	MRGPRF-AS1	-	MRGPRF antisense RNA 1	ncRNA
65346	chr14	50322201	50322400	+	0	NA	intron (NM_001382510, intron 2 of 4)	intron (NM_001382510, intron 2 of 4)	9976	NM_015684	27109		NM_015684	ENSG00000125375	DMAC2L	ATP5S|ATPW|FB|HSU79253	distal membrane arm assembly component 2 like	protein-coding
162728	chr3	49020801	49023200	+	0	NA	promoter-TSS (NM_018114)	promoter-TSS (NM_018114)	-121	NM_199069	25915		NM_199069	ENSG00000178057	NDUFAF3	2P1|C3orf60|E3-3|MC1DN18	NADH:ubiquinone oxidoreductase complex assembly factor 3	protein-coding
161654	chr3	43324021	43324580	+	0	NA	intron (NM_017719, intron 3 of 6)	AluSx4|SINE|Alu	27662	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
145363	chr20	41155401	41155700	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-13473	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
16248	chr1	153959571	153959900	+	0	NA	3' UTR (NM_001271959, exon 4 of 4)	3' UTR (NM_001271959, exon 4 of 4)	-1123	NM_181715	200186		NM_181715	ENSG00000160741	CRTC2	TORC-2|TORC2	CREB regulated transcription coactivator 2	protein-coding
123215	chr19	52778721	52779550	+	0	NA	intron (NM_001321867, intron 1 of 3)	intron (NM_001321867, intron 1 of 3)	7656	NM_198457	162966		NM_198457	ENSG00000189190	ZNF600	KR-ZNF1	zinc finger protein 600	protein-coding
21474	chr1	205628601	205629200	+	0	NA	intron (NM_021795, intron 1 of 2)	AluY|SINE|Alu	3111	NM_001973	2005		NM_001973	ENSG00000158711	ELK4	SAP1	ETS transcription factor ELK4	protein-coding
101830	chr17	73644701	73645500	+	0	NA	promoter-TSS (NM_001144952)	promoter-TSS (NM_001144952)	-655	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
76467	chr15	74856921	74857380	+	0	NA	intron (NM_001320778, intron 1 of 9)	intron (NM_001320778, intron 1 of 9)	-13994	NM_001284364	25989		NM_001099436	ENSG00000140474	ULK3	-	unc-51 like kinase 3	protein-coding
180122	chr5	1311921	1312650	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-2908	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
153024	chr22	23235621	23236000	+	0	NA	intron (NM_021574, intron 1 of 21)	MLT1A0|LTR|ERVL-MaLR	-26957	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
68182	chr14	76150321	76150780	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1335	NM_001322029	55668		NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G-patch domain containing 2 like	protein-coding
56615	chr12	118147021	118147280	+	0	NA	Intergenic	AluSx4|SINE|Alu	11026	NM_002567	5037		NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
218086	chr8	38941071	38941230	+	0	NA	intron (NM_021623, intron 3 of 11)	AluSz|SINE|Alu	-33078	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
195972	chr6	41961601	41962330	+	0	NA	intron (NM_001136017, intron 1 of 4)	L2b|LINE|L2	-20117	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
67066	chr14	67868351	67868650	+	0	NA	intron (NM_133509, intron 5 of 10)	L1PA3|LINE|L1	44908	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
107001	chr18	32048221	32048830	+	0	NA	intron (NM_017831, intron 4 of 5)	MIR|SINE|MIR	29700	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
217500	chr8	29059521	29059800	+	0	NA	Intergenic	Intergenic	168346	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
130957	chr2	87520951	87521850	+	0	NA	non-coding (NR_024206, exon 2 of 2)	non-coding (NR_024206, exon 2 of 2)	51450	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
200959	chr6	139210671	139211100	+	0	NA	Intergenic	L1PA4|LINE|L1	75805	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
156667	chr22	41648221	41649250	+	0	NA	intron (NM_001288976, intron 7 of 12)	intron (NM_001288976, intron 7 of 12)	27440	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
107334	chr18	45688771	45689430	+	0	NA	Intergenic	Intergenic	-35081	NM_001308278	6563		NM_015865	ENSG00000141469	SLC14A1	HUT11|HUT11A|HsT1341|JK|Jk(a)|Jk(b)|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 member 1 (Kidd blood group)	protein-coding
56774	chr12	120168821	120169080	+	0	NA	intron (NM_006836, intron 15 of 57)	intron (NM_006836, intron 15 of 57)	-13451	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
159714	chr3	15693321	15693580	+	0	NA	intron (NM_001349277, intron 17 of 27)	intron (NM_001349277, intron 17 of 27)	3921	NR_036085	100422990		NR_036085	ENSG00000264354	MIR3134	-	microRNA 3134	ncRNA
119794	chr19	41324821	41325400	+	0	NA	TTS (NM_052848)	TTS (NM_052848)	14633	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
149052	chr21	15063371	15063730	+	0	NA	intron (NM_003489, intron 1 of 3)	intron (NM_003489, intron 1 of 3)	1450	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
161904	chr3	45976421	45977480	+	0	NA	intron (NM_024513, intron 4 of 17)	intron (NM_024513, intron 4 of 17)	18874	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
161753	chr3	44648571	44649180	+	0	NA	TTS (NM_001323296)	TTS (NM_001323296)	143	NM_003420	7584		NM_003420	ENSG00000169981	ZNF35	HF.10|HF10|Zfp105	zinc finger protein 35	protein-coding
22676	chr1	223827151	223827450	+	0	NA	intron (NM_001031685, intron 1 of 17)	L2a|LINE|L2	18647	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
33578	chr10	119494171	119495350	+	0	NA	Intergenic	Intergenic	41773	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
27680	chr10	33113501	33113700	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	3207	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
40985	chr11	65388151	65388330	+	0	NA	intron (NM_001300832, intron 2 of 9)	MIRc|SINE|MIR	1603	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
178354	chr4	145941001	145941200	+	0	NA	Intergenic	Intergenic	-2277	NM_178835	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
142038	chr20	1683551	1684050	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26021	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
163185	chr3	50202951	50203300	+	0	NA	Intergenic	Intergenic	-2146	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
232101	chr9	133685321	133685580	+	0	NA	intron (NM_001134707, intron 16 of 20)	intron (NM_001134707, intron 16 of 20)	-28042	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
93697	chr17	19383601	19384100	+	0	NA	TTS (NM_139033)	TTS (NM_139033)	3340	NM_001198695	4239		NM_002404	ENSG00000166482	MFAP4	-	microfibril associated protein 4	protein-coding
165825	chr3	105832351	105833150	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	34841	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
119693	chr19	41116251	41116730	+	0	NA	exon (NM_000774, exon 3 of 10)	exon (NM_000774, exon 3 of 10)	2058	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
159613	chr3	15263451	15264180	+	0	NA	intron (NM_004844, intron 4 of 8)	intron (NM_004844, intron 4 of 8)	9631	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
157484	chr22	45311651	45312130	+	0	NA	intron (NM_001349915, intron 1 of 7)	intron (NM_001349915, intron 1 of 7)	1956	NM_017911	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
47921	chr12	6776601	6777000	+	0	NA	intron (NM_002286, intron 5 of 7)	intron (NM_002286, intron 5 of 7)	4280	NM_002286	3902		NM_002286	ENSG00000089692	LAG3	CD223	lymphocyte activating 3	protein-coding
110260	chr19	1799721	1799980	+	0	NA	intron (NR_047593, intron 14 of 28)	intron (NR_047593, intron 14 of 28)	12426	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
107280	chr18	44678601	44679800	+	0	NA	promoter-TSS (NM_001379141)	promoter-TSS (NM_001379141)	-873	NM_001379141	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
181977	chr5	55171101	55171300	+	0	NA	promoter-TSS (NR_029960)	promoter-TSS (NR_029960)	-458	NR_030387	693123		NR_030387	ENSG00000207728	MIR449B	MIRN449B|mir-449b	microRNA 449b	ncRNA
179995	chr5	923201	923700	+	0	NA	Intergenic	Intergenic	30566	NM_004237	9319		NM_004237	ENSG00000071539	TRIP13	16E1BP|MVA3|OOMD9|OZEMA9	thyroid hormone receptor interactor 13	protein-coding
100052	chr17	58089921	58090750	+	0	NA	3' UTR (NM_080677, exon 3 of 3)	3' UTR (NM_080677, exon 3 of 3)	6916	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
188338	chr5	151252021	151253880	+	0	NA	promoter-TSS (NM_000405)	promoter-TSS (NM_000405)	-235	NM_000405	2760		NM_000405	ENSG00000196743	GM2A	GM2-AP|GM2AP|SAP-3	ganglioside GM2 activator	protein-coding
160427	chr3	28300721	28301180	+	0	NA	intron (NM_001331186, intron 3 of 4)	L1ME4b|LINE|L1	-47771	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
186610	chr5	138525601	138526130	+	0	NA	intron (NM_004730, intron 2 of 10)	AluSx|SINE|Alu	15846	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
85438	chr16	50509621	50509880	+	0	NA	Intergenic	Intergenic	-38646	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
171057	chr3	195272951	195273250	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1941	NM_152531	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
223385	chr8	143910871	143911430	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	28447	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
238585	chrX	153885801	153886800	+	0	NA	promoter-TSS (NM_001278116)	promoter-TSS (NM_001278116)	-127	NM_001278116	3897		NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|HYCX|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
166258	chr3	112391551	112391650	+	0	NA	Intergenic	L2|LINE|L2	58444	NM_005944	4345		NM_005944	ENSG00000091972	CD200	MOX1|MOX2|MRC|OX-2	CD200 molecule	protein-coding
137233	chr2	191674701	191675000	+	0	NA	Intergenic	AluJo|SINE|Alu	-3222	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
142974	chr20	20003171	20003850	+	0	NA	Intergenic	AluJr|SINE|Alu	-13780	NM_181528	51126		NM_016100	ENSG00000173418	NAA20	MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein-coding
193953	chr6	31682371	31683580	+	0	NA	Intergenic	CpG	-2602	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
66750	chr14	64514501	64515000	+	0	NA	intron (NR_110550, intron 3 of 3)	intron (NR_110550, intron 3 of 3)	-9537	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
121473	chr19	47105951	47106250	+	0	NA	intron (NM_015168, intron 2 of 14)	MIR|SINE|MIR	7676	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
200731	chr6	137710551	137711230	+	0	NA	Intergenic	AluSx1|SINE|Alu	28147	NR_121618	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
78131	chr15	90384971	90385980	+	0	NA	Intergenic	AluSx|SINE|Alu	-2767	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
172512	chr4	2264921	2265330	+	0	NA	Intergenic	Intergenic	-3016	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
96380	chr17	40110171	40110600	+	0	NA	Intergenic	Intergenic	-9796	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
129448	chr2	69505801	69506200	+	0	NA	intron (NM_001371575, intron 15 of 20)	Tigger15a|DNA|TcMar-Tigger	14171	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
30729	chr10	84020121	84020380	+	0	NA	Intergenic	L1PA7|LINE|L1	-119259	NM_014394	27069		NM_014394	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
74208	chr15	56168501	56168700	+	0	NA	intron (NM_001368073, intron 2 of 8)	intron (NM_001368073, intron 2 of 8)	21332	NM_001370554	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
92225	chr17	7884701	7885800	+	0	NA	5' UTR (NM_001330111, exon 1 of 5)	5' UTR (NM_001330111, exon 1 of 5)	170	NM_001330111	84316		NM_032356	ENSG00000183011	NAA38	LSMD1|MAK31|PFAAP2	N-alpha-acetyltransferase 38, NatC auxiliary subunit	protein-coding
135461	chr2	161272921	161273500	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-18567	NR_110593	101929512		NR_110593		PSMD14-DT	-	PSMD14 divergent transcript	ncRNA
177441	chr4	112705421	112706580	+	0	NA	promoter-TSS (NM_001354269)	promoter-TSS (NM_001354269)	-18	NM_001354269	287		NM_001148	ENSG00000145362	ANK2	ANK-2|CFAP87|FAP87|LQT4|brank-2	ankyrin 2	protein-coding
20575	chr1	198736421	198736780	+	0	NA	intron (NM_002838, intron 23 of 32)	L1MA3|LINE|L1	97560	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
28798	chr10	62120851	62121350	+	0	NA	Intergenic	L1MA3|LINE|L1	71743	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
213112	chr7	131235451	131236850	+	0	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	91629	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
135790	chr2	169803821	169804280	+	0	NA	intron (NM_003142, intron 2 of 11)	intron (NM_003142, intron 2 of 11)	4748	NM_001294145	6741		NM_003142	ENSG00000138385	SSB	LARP3|La|La/SSB	small RNA binding exonuclease protection factor La	protein-coding
193603	chr6	30726451	30726550	+	0	NA	Intergenic	AluJb|SINE|Alu	4862	NM_001293215	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
174987	chr4	49652151	49652630	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	665748	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
231515	chr9	131416801	131417650	+	0	NA	intron (NM_013318, intron 1 of 31)	HAL1|LINE|L1	23139	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
165547	chr3	101383201	101384150	+	0	NA	intron (NM_001282803, intron 3 of 20)	MER52A|LTR|ERV1	-63100	NM_016247	50939		NM_016247	ENSG00000081148	IMPG2	IPM200|RP56|SPACRCAN|VMD5	interphotoreceptor matrix proteoglycan 2	protein-coding
79605	chr16	1069101	1069330	+	0	NA	intron (NR_027242, intron 2 of 3)	MIRc|SINE|MIR	-3541	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
78838	chr15	99804201	99804400	+	0	NA	intron (NR_003260, intron 2 of 4)	intron (NR_003260, intron 2 of 4)	2627	NR_003260	196968		NM_194295	ENSG00000290767	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	dynamin 1 pseudogene 46	pseudo
8167	chr1	39523221	39523480	+	0	NA	intron (NM_181809, intron 6 of 6)	intron (NM_181809, intron 6 of 6)	8484	NR_132962	192217		NR_132962	ENSG00000237624	OXCT2P1	OXCT2P	3-oxoacid CoA-transferase 2 pseudogene 1	pseudo
202861	chr6	159800101	159800500	+	0	NA	promoter-TSS (NM_001271862)	promoter-TSS (NM_001271862)	24	NM_001271862	154197		NM_173516	ENSG00000146453	PNLDC1	HsPNLDC1|SPGF57|Trimmer	PARN like ribonuclease domain containing exonuclease 1	protein-coding
228862	chr9	112330851	112331650	+	0	NA	intron (NM_005156, intron 1 of 14)	intron (NM_005156, intron 1 of 14)	1776	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
46334	chr11	125509301	125509700	+	0	NA	Intergenic	LTR48|LTR|ERV1	-13190	NM_022549	9638		NM_005103	ENSG00000149557	FEZ1	UNC-76	fasciculation and elongation protein zeta 1	protein-coding
80443	chr16	2659301	2659500	+	0	NA	non-coding (NR_040023, exon 3 of 3)	non-coding (NR_040023, exon 3 of 3)	14039	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
180297	chr5	4615621	4615950	+	0	NA	Intergenic	L1PA2|LINE|L1	-157696	NR_104619	101929153		NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
201814	chr6	150015171	150015880	+	0	NA	Intergenic	MER41E|LTR|ERV1	10007	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
145069	chr20	38548401	38548600	+	0	NA	intron (NM_020336, intron 19 of 29)	MER113A|DNA|hAT-Charlie	31937	NR_039605	100616190		NR_039605	ENSG00000275453	MIR548O2	-	microRNA 548o-2	ncRNA
202605	chr6	158718701	158719330	+	0	NA	intron (NM_001318745, intron 7 of 14)	intron (NM_001318745, intron 7 of 14)	45738	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
138813	chr2	216216071	216216230	+	0	NA	promoter-TSS (NR_037701)	promoter-TSS (NR_037701)	-739	NR_037701	150967		NM_001199924	ENSG00000260804	LINC01963	PKI55	long intergenic non-protein coding RNA 1963	ncRNA
153942	chr22	30340151	30340480	+	0	NA	exon (NM_005877, exon 9 of 16)	exon (NM_005877, exon 9 of 16)	-13374	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
189514	chr5	173408251	173408630	+	0	NA	Intergenic	L1HS|LINE|L1	60985	NR_107023	102465862		NR_107023	ENSG00000274994	MIR8056	hsa-mir-8056	microRNA 8056	ncRNA
10852	chr1	77968471	77968830	+	0	NA	intron (NR_146539, intron 2 of 22)	(A)n|Simple_repeat|Simple_repeat	10422	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
1429	chr1	2588801	2589280	+	0	NA	non-coding (NR_036637, exon 6 of 7).2	non-coding (NR_036637, exon 6 of 7).2	2263	NM_001195741	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
233440	chr9	137620421	137620880	+	0	NA	intron (NM_001354612, intron 1 of 8)	AluJb|SINE|Alu	1645	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
131883	chr2	98729401	98729600	+	0	NA	intron (NM_012214, intron 1 of 15)	intron (NM_012214, intron 1 of 15)	1632	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
127856	chr2	45646821	45647080	+	0	NA	Intergenic	AluJb|SINE|Alu	-4725	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
35410	chr11	1395971	1396580	+	0	NA	intron (NM_001256629, intron 1 of 19)	(CCCTCGT)n|Simple_repeat|Simple_repeat	6341	NM_003957	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
202955	chr6	161152971	161153330	+	0	NA	intron (NM_020133, intron 5 of 8)	intron (NM_020133, intron 5 of 8)	8832	NR_024277	79992		NM_024929		AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1	ncRNA
207310	chr7	44028051	44028550	+	0	NA	TTS (NR_024116)	TTS (NR_024116)	-9106	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
36585	chr11	6693621	6694680	+	0	NA	Intergenic	LTR8|LTR|ERV1	-10810	NM_022061	63875		NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26|bL17m	mitochondrial ribosomal protein L17	protein-coding
208884	chr7	73838271	73838430	+	0	NA	intron (NM_152559, intron 5 of 5)	MIR1_Amn|SINE|MIR	4166	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
31357	chr10	93481771	93481930	+	0	NA	intron (NM_133337, intron 1 of 52)	intron (NM_133337, intron 1 of 52)	484	NM_133337	26509		NM_013451	ENSG00000138119	MYOF	FER1L3|HAE7	myoferlin	protein-coding
193704	chr6	31138651	31138980	+	0	NA	intron (NM_014068, intron 5 of 5).5	intron (NM_014068, intron 5 of 5).5	251	NM_014069	170680		NM_014069	ENSG00000204538	PSORS1C2	C6orf17|SPR1	psoriasis susceptibility 1 candidate 2	protein-coding
75220	chr15	64852251	64852750	+	0	NA	intron (NM_025201, intron 2 of 5)	MER5B|DNA|hAT-Charlie	10585	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
28433	chr10	48346351	48346530	+	0	NA	intron (NM_001323302, intron 3 of 13)	LTR13|LTR|ERVK	39763	NM_001323320	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
137421	chr2	196298201	196298430	+	0	NA	intron (NM_001348768, intron 13 of 28)	intron (NM_001348768, intron 13 of 28)	38291	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
200812	chr6	137910621	137911080	+	0	NA	Intergenic	Intergenic	34950	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
62444	chr13	99336601	99337130	+	0	NA	intron (NR_026644, intron 6 of 8)	intron (NR_026644, intron 6 of 8)	-14555	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
216227	chr8	12184371	12184530	+	0	NA	intron (NR_003494, intron 5 of 5)	AluJb|SINE|Alu	-1286	NR_146925	619423		NR_146925		FAM85A	-	family with sequence similarity 85 member A	ncRNA
56930	chr12	120453771	120454730	+	0	NA	intron (NM_176818, intron 2 of 3)	Charlie8|DNA|hAT-Charlie	7806	NR_033684	283459		NM_176818	ENSG00000257218	GATC	15E1.2|COXPD42	glutamyl-tRNA amidotransferase subunit C	protein-coding
177337	chr4	109826721	109827000	+	0	NA	Intergenic	Intergenic	-1112	NM_006583	10692		NM_006583	ENSG00000180245	RRH	-	retinal pigment epithelium-derived rhodopsin homolog	protein-coding
133200	chr2	113123951	113124050	+	0	NA	intron (NM_173843, intron 2 of 5)	intron (NM_173843, intron 2 of 5)	-3489	NM_001379360	3557		NM_000577	ENSG00000136689	IL1RN	CRMO2|DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4	interleukin 1 receptor antagonist	protein-coding
210458	chr7	100125471	100125630	+	0	NA	TTS (NM_152755)	TTS (NM_152755)	-1417	NM_203397	255374		NM_203397	ENSG00000214309	MBLAC1	-	metallo-beta-lactamase domain containing 1	protein-coding
143489	chr20	31073121	31073580	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-184314	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
44959	chr11	116834301	116834500	+	0	NA	Intergenic	Intergenic	-1717	NR_126362	104326055		NR_126362	ENSG00000235910	APOA1-AS	-	APOA1 antisense RNA	ncRNA
194881	chr6	34662751	34663150	+	0	NA	intron (NM_022758, intron 1 of 3)	AluJb|SINE|Alu	-33204	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
8835	chr1	43073501	43074050	+	0	NA	Intergenic	Intergenic	-74129	NM_001101376	440585		NM_001101376	ENSG00000186973	CFAP144	FAM183A	cilia and flagella associated protein 144	protein-coding
142127	chr20	2695871	2696030	+	0	NA	intron (NR_138537, intron 2 of 17)	intron (NR_138537, intron 2 of 17)	3072	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
167739	chr3	131486571	131487130	+	0	NA	intron (NM_007208, intron 6 of 9)	L1PA6|LINE|L1	-7617	NR_002985	677836		NR_002985		SNORA58	ACA58|SNORA58B	small nucleolar RNA, H/ACA box 58	snoRNA
172716	chr4	2800951	2801400	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	8090	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
87916	chr16	79217321	79217950	+	0	NA	Intergenic	Intergenic	383102	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
117473	chr19	19754121	19754580	+	0	NA	Intergenic	HSAT5|Satellite|Satellite	-21238	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
216343	chr8	15581721	15581980	+	0	NA	intron (NM_001356429, intron 1 of 10)	L1PA2|LINE|L1	41587	NM_001356429	7991		NM_006765	ENSG00000104723	TUSC3	D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2	tumor suppressor candidate 3	protein-coding
85793	chr16	56952571	56953430	+	0	NA	Intergenic	Intergenic	-8950	NM_001286085	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
7663	chr1	35707001	35709080	+	0	NA	Intergenic	CpG	8871	NM_001348691	127703		NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
197630	chr6	83334371	83334650	+	0	NA	intron (NM_002395, intron 5 of 13)	L1HS|LINE|L1	96541	NM_002395	4199		NM_002395	ENSG00000065833	ME1	HUMNDME|MES	malic enzyme 1	protein-coding
97873	chr17	45049071	45049450	+	0	NA	intron (NM_001288654, intron 1 of 4)	AluJr|SINE|Alu	2372	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
38368	chr11	44615201	44615600	+	0	NA	intron (NM_002231, intron 7 of 9)	intron (NM_002231, intron 7 of 9)	49737	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
170561	chr3	186794771	186795130	+	0	NA	intron (NM_002916, intron 4 of 10)	intron (NM_002916, intron 4 of 10)	7337	NR_002588	619568		NR_002588	ENSG00000263776	SNORA4	ACA4	small nucleolar RNA, H/ACA box 4	snoRNA
181999	chr5	55231351	55232150	+	0	NA	non-coding (NR_125348, exon 2 of 2)	non-coding (NR_125348, exon 2 of 2)	1241	NR_125348	10309		NM_021147	ENSG00000152669	CCNO	CCNU|CILD29|UDG2	cyclin O	protein-coding
134312	chr2	136009801	136010050	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-24241	NM_001293312	1615		NM_001349	ENSG00000115866	DARS1	DARS|HBSL|aspRS	aspartyl-tRNA synthetase 1	protein-coding
209621	chr7	77703671	77704000	+	0	NA	intron (NM_198467, intron 1 of 7)	AluJr4|SINE|Alu	-6490	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
182275	chr5	57217871	57218600	+	0	NA	intron (NM_001331037, intron 3 of 12)	MER21C|LTR|ERVL	4161	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
224363	chr9	7614001	7614200	+	0	NA	Intergenic	L2|LINE|L2	185678	NM_033428	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
150126	chr21	37547021	37547530	+	0	NA	Intergenic	Intergenic	126976	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
32279	chr10	102113221	102113800	+	0	NA	intron (NM_001321612, intron 1 of 10)	MIR1_Amn|SINE|MIR	1492	NM_003893	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
90775	chr17	2066771	2066930	+	0	NA	intron (NM_001282326, intron 4 of 6)	intron (NM_001282326, intron 4 of 6)	10540	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
61646	chr13	73895051	73895550	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	238629	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
92909	chr17	16485601	16486000	+	0	NA	intron (NM_001113567, intron 1 of 3)	intron (NM_001113567, intron 1 of 3)	6393	NM_001113567	388341		NM_207387	ENSG00000181350	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
42691	chr11	72641921	72642180	+	0	NA	intron (NM_001243784, intron 1 of 30)	intron (NM_001243784, intron 1 of 30)	393	NM_001143839	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
64671	chr14	31954371	31954530	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	9597	NR_146544	105370439		NR_146544	ENSG00000258474	LINC02313	-	long intergenic non-protein coding RNA 2313	ncRNA
40059	chr11	62731771	62732180	+	0	NA	intron (NM_173810, intron 1 of 2)	AluY|SINE|Alu	3489	NM_173810	283237		NM_173810	ENSG00000162222	TTC9C	-	tetratricopeptide repeat domain 9C	protein-coding
133081	chr2	112436251	112436350	+	0	NA	Intergenic	MER31A|LTR|ERV1	-2655	NM_001164463	727851		NM_001164463	ENSG00000169629	RGPD8	RANBP2L1|RGP8|RanBP2alpha	RANBP2 like and GRIP domain containing 8	protein-coding
38677	chr11	46489971	46490300	+	0	NA	intron (NR_160027, intron 10 of 18)	intron (NR_160027, intron 10 of 18)	-38246	NR_036117	100422827		NR_036117	ENSG00000265014	MIR3160-1	mir-3160-1	microRNA 3160-1	ncRNA
195294	chr6	36535271	36535900	+	0	NA	intron (NM_007271, intron 2 of 13)	L1ME2z|LINE|L1	11894	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
90614	chr17	1637801	1638100	+	0	NA	intron (NM_145350, intron 8 of 10).2	intron (NM_145350, intron 8 of 10).2	7782	NM_145350	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
147029	chr20	53603621	53603880	+	0	NA	Intergenic	Intergenic	-4604	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
126295	chr2	27214751	27215050	+	0	NA	intron (NM_001170795, intron 2 of 6)	MER3|DNA|hAT-Charlie	-2469	NM_004341	790		NM_004341	ENSG00000084774	CAD	CDG1Z|DEE50|EIEE50|GATD4	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding
118748	chr19	38334871	38336200	+	0	NA	promoter-TSS (NM_021185)	promoter-TSS (NM_021185)	-295	NM_001330496	57828		NM_021185	ENSG00000099338	CATSPERG	C19orf15	cation channel sperm associated auxiliary subunit gamma	protein-coding
116024	chr19	17162701	17162900	+	0	NA	intron (NM_004145, intron 9 of 39)	AluJb|SINE|Alu	-52557	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
191065	chr6	3357621	3357930	+	0	NA	intron (NM_001382320, intron 1 of 1)	L2c|LINE|L2	-33625	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
108357	chr18	67483401	67483600	+	0	NA	Intergenic	Intergenic	-33046	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
238359	chrX	149858321	149859040	+	0	NA	intron (NR_109813, intron 2 of 2)	L1PA15|LINE|L1	-22461	NM_001166400	4107		NM_005364	ENSG00000156009	MAGEA8	CT1.8|MAGE8	MAGE family member A8	protein-coding
223559	chr8	144258451	144258700	+	0	NA	intron (NM_032450, intron 35 of 43)	intron (NM_032450, intron 35 of 43)	4162	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
98598	chr17	47744601	47745400	+	0	NA	exon (NM_013351, exon 6 of 6)	exon (NM_013351, exon 6 of 6)	11764	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
229208	chr9	114806001	114806480	+	0	NA	promoter-TSS (NM_005118)	promoter-TSS (NM_005118)	-201	NM_005118	9966		NM_005118	ENSG00000181634	TNFSF15	TL1|TL1A|TNLG1B|VEGI|VEGI192A	TNF superfamily member 15	protein-coding
111856	chr19	4597451	4598930	+	0	NA	Intergenic	Intergenic	-38506	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
113667	chr19	10387001	10387450	+	0	NA	Intergenic	AluSx3|SINE|Alu	-6653	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
38924	chr11	47449371	47449530	+	0	NA	promoter-TSS (NM_032645)	promoter-TSS (NM_032645)	-314	NM_032645	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
70407	chr14	102006171	102006330	+	0	NA	intron (NM_001376, intron 27 of 77)	AluSg|SINE|Alu	41677	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
147323	chr20	57772501	57772700	+	0	NA	Intergenic	Intergenic	-61064	NM_199171	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
167601	chr3	129569451	129569750	+	0	NA	intron (NM_015103, intron 20 of 35)	intron (NM_015103, intron 20 of 35)	21215	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
14018	chr1	120727101	120727500	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	3361	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
180279	chr5	1800751	1801950	+	0	NA	promoter-TSS (NM_004553)	promoter-TSS (NM_004553)	-57	NM_004553	4726		NM_004553	ENSG00000145494	NDUFS6	CI-13kA|CI-13kD-A|CI13KDA|MC1DN9	NADH:ubiquinone oxidoreductase subunit S6	protein-coding
116942	chr19	18848251	18848550	+	0	NA	intron (NM_001297549, intron 3 of 23)	intron (NM_001297549, intron 3 of 23)	16441	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
202348	chr6	157577771	157577980	+	0	NA	intron (NM_024630, intron 2 of 8)	L1PA15|LINE|L1	48743	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
164163	chr3	56780071	56780400	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-4518	NM_001377413	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
239125	chrY	11306171	11306700	+	0	NA	Intergenic	Intergenic	1115155	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
104984	chr17	81995651	81996680	+	0	NA	intron (NR_045351, intron 5 of 14)	intron (NR_045351, intron 5 of 14)	18536	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
224069	chr9	4070371	4070550	+	0	NA	intron (NM_001042413, intron 4 of 10)	intron (NM_001042413, intron 4 of 10)	81723	NM_152629	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
45030	chr11	117027401	117027800	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSq2|SINE|Alu	70828	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
147247	chr20	57422301	57422700	+	0	NA	Intergenic	Intergenic	-29444	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
59048	chr13	20579751	20579890	+	0	NA	intron (NR_148462, intron 4 of 28)	L1MA2|LINE|L1	12663	NR_148465	8100		NM_006531	ENSG00000032742	IFT88	D13S1056E|DAF19|TG737|TTC10|hTg737	intraflagellar transport 88	protein-coding
227016	chr9	83818971	83819130	+	0	NA	Intergenic	Intergenic	-1213	NM_001135953	80318		NM_025211	ENSG00000165113	GKAP1	FKSG21|GKAP42	G kinase anchoring protein 1	protein-coding
212757	chr7	129936851	129937400	+	0	NA	intron (NM_001202498, intron 1 of 6)	AluY|SINE|Alu	15835	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
172133	chr4	1189371	1189730	+	0	NA	intron (NM_001199021, intron 1 of 7)	AluJb|SINE|Alu	-16339	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
204528	chr7	4802801	4804530	+	0	NA	exon (NM_018059, exon 11 of 15)	exon (NM_018059, exon 11 of 15)	-15026	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
122780	chr19	50311951	50312530	+	0	NA	non-coding (NR_110912, exon 4 of 4)	non-coding (NR_110912, exon 4 of 4)	16831	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
234282	chrX	13646101	13646330	+	0	NA	Intergenic	Intergenic	-6926	NM_001297564	170082		NM_152634	ENSG00000176896	TCEANC	TCEANC1	transcription elongation factor A N-terminal and central domain containing	protein-coding
213533	chr7	139087171	139087330	+	0	NA	intron (NM_020119, intron 2 of 12)	intron (NM_020119, intron 2 of 12)	22470	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
167951	chr3	136391321	136391900	+	0	NA	intron (NM_005862, intron 22 of 33)	AluSc|SINE|Alu	141270	NM_000532	5096		NM_000532	ENSG00000114054	PCCB	-	propionyl-CoA carboxylase subunit beta	protein-coding
43636	chr11	84714401	84714600	+	0	NA	intron (NM_001351274, intron 5 of 26)	intron (NM_001351274, intron 5 of 26)	6442	NM_001351276	1740		NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
120103	chr19	42140021	42140600	+	0	NA	Intergenic	Intergenic	-6797	NR_036208	100422980		NR_036208	ENSG00000266226	MIR4323	-	microRNA 4323	ncRNA
106826	chr18	24003871	24004030	+	0	NA	intron (NR_110796, intron 3 of 5)	AluJr4|SINE|Alu	-10804	NM_001243425	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
234913	chrX	36175851	36175950	+	0	NA	intron (NM_001304548, intron 39 of 63)	L1PA3|LINE|L1	256166	NM_001304548	286464		NM_152632	ENSG00000165164	CFAP47	CHDC2|CXorf22|CXorf30|CXorf59|SPGF52|SPGFX3	cilia and flagella associated protein 47	protein-coding
238053	chrX	135521301	135522500	+	0	NA	intron (NM_001351601, intron 2 of 17)	(CTC)n|Simple_repeat|Simple_repeat	-1226	NR_046740	100874118		NR_046740	ENSG00000225235	INTS6L-AS1	DDX26B-AS1	INTS6L antisense RNA 1	ncRNA
35657	chr11	1862101	1862500	+	0	NA	intron (NM_002339, intron 1 of 10)	intron (NM_002339, intron 1 of 10)	-2764	NR_036185	100423021		NR_036185	ENSG00000264493	MIR4298	-	microRNA 4298	ncRNA
183946	chr5	88140301	88141980	+	0	NA	Intergenic	Intergenic	127705	NM_153354	153396		NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
101054	chr17	64821971	64822130	+	0	NA	promoter-TSS (NR_036199).2	promoter-TSS (NR_036199).2	52	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
221500	chr8	124561721	124562180	+	0	NA	intron (NM_001282974, intron 10 of 13)	intron (NM_001282974, intron 10 of 13)	22827	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
95084	chr17	33967921	33968180	+	0	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	188756	NM_001094	40		NM_001094	ENSG00000108684	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid sensing ion channel subunit 2	protein-coding
64520	chr14	24423371	24423530	+	0	NA	Intergenic	L2b|LINE|L2	-5836	NM_001290256	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
216049	chr8	9829351	9829900	+	0	NA	Intergenic	Intergenic	73704	NR_024281	157627		NR_024281	ENSG00000253230	MIR124-1HG	LINC00599|Rncr3|neuroLNC	MIR124-1 host gene	ncRNA
124962	chr2	8680731	8682700	+	0	NA	promoter-TSS (NM_002166)	promoter-TSS (NM_002166)	146	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
183690	chr5	80754521	80755230	+	0	NA	intron (NM_002439, intron 12 of 23)	intron (NM_002439, intron 12 of 23)	-99892	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
10918	chr1	84075221	84075680	+	0	NA	Intergenic	MIR|SINE|MIR	-2525	NM_002731	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
128494	chr2	58466871	58467030	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-53803	NR_033873	400955		NR_033873	ENSG00000233723	LINC01122	-	long intergenic non-protein coding RNA 1122	ncRNA
201257	chr6	144140651	144140950	+	0	NA	Intergenic	Intergenic	-9717	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
58662	chr12	132529101	132529330	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	23809	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
131259	chr2	96045521	96045780	+	0	NA	Intergenic	L1PA6|LINE|L1	-9676	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
65508	chr14	51894451	51894550	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	24071	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
160652	chr3	31577501	31577700	+	0	NA	intron (NM_178862, intron 2 of 15)	L1MEd|LINE|L1	44675	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
181124	chr5	37377971	37378130	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1268	NM_001345998	55100		NM_018034	ENSG00000082068	WDR70	-	WD repeat domain 70	protein-coding
216192	chr8	11845671	11846050	+	0	NA	intron (NM_001384728, intron 9 of 10)	intron (NM_001384728, intron 9 of 10)	22227	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
86159	chr16	57759401	57760130	+	0	NA	exon (NM_001130100, exon 18 of 20)	exon (NM_001130100, exon 18 of 20)	12587	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
205770	chr7	23527121	23527700	+	0	NA	intron (NM_001362760, intron 1 of 8)	intron (NM_001362760, intron 1 of 8)	4571	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
39533	chr11	61100571	61101150	+	0	NA	intron (NM_001346456, intron 1 of 10)	intron (NM_001346456, intron 1 of 10)	-1629	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
142292	chr20	3242221	3242880	+	0	NA	Intergenic	Intergenic	-3360	NR_135000	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
8537	chr1	41020971	41021330	+	0	NA	5' UTR (NM_001377532, exon 1 of 4)	5' UTR (NM_001377532, exon 1 of 4)	575	NM_001377532	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
48946	chr12	12729621	12730330	+	0	NA	intron (NM_001130415, intron 1 of 1)	AluJr4|SINE|Alu	4058	NM_001130415	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
160902	chr3	33807271	33807630	+	0	NA	intron (NM_001256192, intron 1 of 5)	intron (NM_001256192, intron 1 of 5)	8820	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
167865	chr3	134378371	134378700	+	0	NA	Intergenic	Intergenic	-3118	NM_001278683	51421		NM_016201	ENSG00000114019	AMOTL2	LCCP	angiomotin like 2	protein-coding
81585	chr16	10314821	10315100	+	0	NA	Intergenic	Intergenic	-71101	NM_024997	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
160535	chr3	30662871	30663230	+	0	NA	intron (NM_001024847, intron 4 of 7)	MER5A1|DNA|hAT-Charlie	56449	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
37469	chr11	18329201	18330030	+	0	NA	intron (NM_001142307, intron 2 of 15)	intron (NM_001142307, intron 2 of 15)	7048	NM_005316	2965		NM_005316	ENSG00000110768	GTF2H1	BTF2|P62|TFB1|TFIIH	general transcription factor IIH subunit 1	protein-coding
718	chr1	1433201	1433600	+	0	NA	intron (NR_125994, intron 1 of 1)	intron (NR_125994, intron 1 of 1)	1173	NR_125996	102724312		NR_125994		LINC01770	-	long intergenic non-protein coding RNA 1770	ncRNA
146855	chr20	51439101	51439730	+	0	NA	intron (NM_173091, intron 6 of 9)	MIR|SINE|MIR	13562	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
199395	chr6	116390571	116390930	+	0	NA	intron (NM_001322944, intron 1 of 4)	intron (NM_001322944, intron 1 of 4)	-19031	NR_148944	100287467		NR_148944		LOC100287467	-	uncharacterized LOC100287467	ncRNA
103515	chr17	78442671	78442930	+	0	NA	intron (NM_173628, intron 71 of 80)	intron (NM_173628, intron 71 of 80)	-42110	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
88293	chr16	84065571	84065880	+	0	NA	exon (NM_003791, exon 18 of 23)	exon (NM_003791, exon 18 of 23)	-22930	NM_001080442	146167		NM_001080442	ENSG00000166558	SLC38A8	FHASD|FVH2|SNAT8	solute carrier family 38 member 8	protein-coding
24969	chr10	3043651	3044050	+	0	NA	Intergenic	Intergenic	23083	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
47174	chr12	786471	786950	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSq|SINE|Alu	33787	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
236575	chrX	72681951	72682450	+	0	NA	intron (NM_001122670, intron 5 of 30)	SVA_F|Retroposon|SVA	-6749	NR_110391	101928259		NR_110391	ENSG00000231944	PHKA1-AS1	-	PHKA1 antisense RNA 1	ncRNA
72988	chr15	40596921	40597180	+	0	NA	intron (NM_144508, intron 1 of 25)	MER119|DNA|hAT-Charlie	2801	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
86357	chr16	66524841	66525400	+	0	NA	intron (NR_073520, intron 5 of 8)	intron (NR_073520, intron 5 of 8)	25002	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
198604	chr6	107719251	107719750	+	0	NA	intron (NM_001286409, intron 2 of 3)	intron (NM_001286409, intron 2 of 3)	12650	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
78637	chr15	94258321	94258580	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	26889	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
91532	chr17	4989021	4989280	+	0	NA	intron (NM_001167985, intron 6 of 7)	intron (NM_001167985, intron 6 of 7)	-1475	NM_001171166	23125		NM_015099	ENSG00000108509	CAMTA2	-	calmodulin binding transcription activator 2	protein-coding
2068	chr1	7929451	7930200	+	0	NA	intron (NM_001561, intron 7 of 7)	L1MD2|LINE|L1	11014	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
92136	chr17	7625301	7625500	+	0	NA	TTS (NM_001320846)	TTS (NM_001320846)	2421	NM_133491	112483		NM_133491	ENSG00000141504	SAT2	SSAT-2|SSAT2	spermidine/spermine N1-acetyltransferase family member 2	protein-coding
181670	chr5	50435201	50435750	+	0	NA	intron (NM_198449, intron 1 of 8)	L1MC4|LINE|L1	5813	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
144644	chr20	35992521	35993080	+	0	NA	intron (NM_001207076, intron 7 of 10)	intron (NM_001207076, intron 7 of 10)	24210	NM_001365709	140894		NM_080834	ENSG00000149646	CNBD2	C20orf152|CNMPD1	cyclic nucleotide binding domain containing 2	protein-coding
72239	chr15	30428551	30429080	+	0	NA	Intergenic	Intergenic	-14555	NM_001282484	101059918		NM_001282484	ENSG00000186399	GOLGA8R	-	golgin A8 family member R	protein-coding
35912	chr11	2421851	2422250	+	0	NA	intron (NM_014555, intron 2 of 23)	intron (NM_014555, intron 2 of 23)	995	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
192885	chr6	27484321	27484580	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-11332	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
198954	chr6	110866471	110867250	+	0	NA	intron (NM_001287215, intron 1 of 8)	AluYk2|SINE|Alu	-7924	NM_001634	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
173059	chr4	6019851	6019950	+	0	NA	Intergenic	MER67C|LTR|ERV1	-1354	NM_001364690	389197		NM_207405	ENSG00000181215	C4orf50	-	chromosome 4 open reading frame 50	protein-coding
194014	chr6	31812521	31813380	+	0	NA	intron (NM_005527, intron 1 of 1)	AluJb|SINE|Alu	2333	NM_005527	3305		NM_005527	ENSG00000204390	HSPA1L	HSP70-1L|HSP70-HOM|HSP70T|hum70t	heat shock protein family A (Hsp70) member 1 like	protein-coding
126413	chr2	27682301	27682680	+	0	NA	intron (NM_018158, intron 9 of 13)	intron (NM_018158, intron 9 of 13)	-18650	NM_001282730	9913		NM_014860	ENSG00000119760	SUPT7L	SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H	SPT7 like, STAGA complex subunit gamma	protein-coding
198703	chr6	108121701	108121900	+	0	NA	Intergenic	Intergenic	-1833	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
217557	chr8	29351981	29353330	+	0	NA	Intergenic	Intergenic	-1971	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
130900	chr2	87455021	87456250	+	0	NA	non-coding (NR_024206, exon 1 of 2)	non-coding (NR_024206, exon 1 of 2)	208	NR_024206	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
19542	chr1	178753421	178753680	+	0	NA	intron (NM_001286247, intron 1 of 18)	intron (NM_001286247, intron 1 of 18)	28306	NM_152663	55103		NM_018037	ENSG00000116191	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
146961	chr20	52411901	52412100	+	0	NA	Intergenic	MIR|SINE|MIR	-208838	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
195788	chr6	40824321	40824580	+	0	NA	Intergenic	Intergenic	198830	NR_110873	101929555		NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
158329	chr22	50441771	50442480	+	0	NA	intron (NM_001351641, intron 22 of 23)	intron (NM_001351641, intron 22 of 23)	32910	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
175372	chr4	70625701	70625900	+	0	NA	Intergenic	Intergenic	-2944	NM_031889	10117		NM_031889	ENSG00000132464	ENAM	ADAI|AI1C|AIH2	enamelin	protein-coding
236462	chrX	71577521	71577850	+	0	NA	promoter-TSS (NM_052957)	promoter-TSS (NM_052957)	-339	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
3667	chr1	16442651	16443130	+	0	NA	intron (NM_018090, intron 1 of 7)	AluJb|SINE|Alu	2166	NM_018090	55707		NM_018090	ENSG00000157191	NECAP2	-	NECAP endocytosis associated 2	protein-coding
124616	chr2	1162751	1163580	+	0	NA	intron (NM_018968, intron 6 of 16)	intron (NM_018968, intron 6 of 16)	-211773	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
54512	chr12	92106551	92106650	+	0	NA	intron (NR_132341, intron 1 of 4)	MER58B|DNA|hAT-Charlie	35113	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
165568	chr3	101531471	101532000	+	0	NA	Intergenic	LTR34|LTR|ERV1	12868	NR_036433	131909		NR_036433		ARB2BP	FAM172B|FAM172BP	ARB2 family member B, pseudogene	pseudo
101440	chr17	67432551	67432650	+	0	NA	intron (NM_181671, intron 1 of 9)	MER30B|DNA|hAT-Charlie	-38889	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
203883	chr7	1480201	1480500	+	0	NA	exon (NM_001080453, exon 30 of 48)	exon (NM_001080453, exon 30 of 48)	-20880	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
224110	chr9	4605871	4606370	+	0	NA	intron (NR_148446, intron 6 of 8)	L1PA3|LINE|L1	56103	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
20069	chr1	185733801	185734700	+	0	NA	promoter-TSS (NM_031935)	promoter-TSS (NM_031935)	-141	NM_031935	83872		NM_031935	ENSG00000143341	HMCN1	ARMD1|FBLN6|FIBL-6|FIBL6	hemicentin 1	protein-coding
151244	chr21	45289701	45290300	+	0	NA	intron (NR_026943, intron 2 of 2)	MER4D1|LTR|ERV1	1948	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
127669	chr2	43177351	43177650	+	0	NA	Intergenic	AluJo|SINE|Alu	49106	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
22132	chr1	211889571	211890290	+	0	NA	Intergenic	LTR12C|LTR|ERV1	58969	NR_135820	102723727		NR_135818	ENSG00000229258	LPGAT1-AS1	-	LPGAT1 antisense RNA 1	ncRNA
184271	chr5	96729121	96729430	+	0	NA	intron (NM_001375317, intron 6 of 30)	intron (NM_001375317, intron 6 of 30)	-14327	NR_104285	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
205123	chr7	6953101	6953450	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	113770	NR_037454	100500886		NR_037454	ENSG00000266287	MIR3683	-	microRNA 3683	ncRNA
130650	chr2	86184701	86187050	+	0	NA	intron (NM_001100169, intron 1 of 14)	MLT1G3-int|LTR|ERVL-MaLR	7233	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
129467	chr2	69575651	69575750	+	0	NA	intron (NM_001371577, intron 2 of 14)	AluSq2|SINE|Alu	-55529	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
54388	chr12	89880401	89881400	+	0	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	-66793	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
21536	chr1	205961551	205961650	+	0	NA	intron (NR_110983, intron 2 of 3)	intron (NR_110983, intron 2 of 3)	3675	NR_110982	103021295		NR_110982		LOC103021295	-	uncharacterized LOC103021295	ncRNA
19054	chr1	169794451	169796230	+	0	NA	promoter-TSS (NM_001320201)	promoter-TSS (NM_001320201)	300	NM_001366770	55732		NM_018186	ENSG00000000460	FIRRM	Apolo1|C1orf112|FLIP|MEICA1	FIGNL1 interacting regulator of recombination and mitosis	protein-coding
230156	chr9	127756851	127757350	+	0	NA	intron (NM_170600, intron 3 of 11)	AluSq|SINE|Alu	-1796	NM_001142533	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
144743	chr20	36592971	36593830	+	0	NA	3' UTR (NM_021809, exon 3 of 3)	3' UTR (NM_021809, exon 3 of 3)	-12379	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
73947	chr15	51730251	51730550	+	0	NA	intron (NM_001143917, intron 1 of 2)	AluJb|SINE|Alu	6662	NM_001363969	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
128006	chr2	47022021	47022480	+	0	NA	intron (NM_020458, intron 12 of 19)	intron (NM_020458, intron 12 of 19)	-80395	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
206874	chr7	37642201	37642400	+	0	NA	Intergenic	L1PA11|LINE|L1	-41466	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
41797	chr11	66863051	66863950	+	0	NA	intron (NM_022172, intron 10 of 20)	intron (NM_022172, intron 10 of 20)	6436	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
89666	chr16	89366771	89367750	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	46808	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
133814	chr2	127815071	127815430	+	0	NA	Intergenic	Intergenic	-4063	NM_001006622	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
156960	chr22	42365851	42366230	+	0	NA	intron (NR_120595, intron 1 of 1)	MIRb|SINE|MIR	3168	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
220061	chr8	93903901	93904500	+	0	NA	Intergenic	Intergenic	11919	NR_039602	100616169		NR_039602	ENSG00000284288	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
97001	chr17	42286121	42286650	+	0	NA	Intergenic	Intergenic	-1162	NM_003152	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
157275	chr22	44068571	44068950	+	0	NA	promoter-TSS (NM_001243385)	promoter-TSS (NM_001243385)	-357	NM_001243385	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
127580	chr2	42722601	42722800	+	0	NA	intron (NM_001282755, intron 16 of 17)	intron (NM_001282755, intron 16 of 17)	41561	NM_148962	165140		NM_148962	ENSG00000162881	OXER1	GPCR|GPR170|TG1019	oxoeicosanoid receptor 1	protein-coding
164310	chr3	57687651	57688080	+	0	NA	intron (NM_152678, intron 1 of 19)	AluJr|SINE|Alu	5212	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
80484	chr16	2707001	2707200	+	0	NA	intron (NM_018992, intron 5 of 5)	intron (NM_018992, intron 5 of 5)	13124	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
124134	chr19	55690071	55690600	+	0	NA	intron (NM_001321263, intron 6 of 10)	L2b|LINE|L2	13710	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
79573	chr16	993221	993680	+	0	NA	Intergenic	Intergenic	11680	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
189963	chr5	177433701	177433900	+	0	NA	intron (NM_001004105, intron 8 of 15)	intron (NM_001004105, intron 8 of 15)	7114	NM_002082	2870		NM_002082	ENSG00000198055	GRK6	GPRK6	G protein-coupled receptor kinase 6	protein-coding
158023	chr22	49916151	49916250	+	0	NA	intron (NM_024105, intron 1 of 9)	AluY|SINE|Alu	2238	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
32759	chr10	104325751	104326650	+	0	NA	intron (NR_120622, intron 2 of 2)	intron (NR_120622, intron 2 of 2)	2792	NM_001272012	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
90255	chr17	872021	872480	+	0	NA	intron (NM_022463, intron 1 of 7)	(GAGG)n|Simple_repeat|Simple_repeat	-8139	NM_001205319	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
76294	chr15	74291351	74291750	+	0	NA	intron (NM_025055, intron 10 of 18)	intron (NM_025055, intron 10 of 18)	-27009	NM_001287181	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
51852	chr12	53471051	53471480	+	0	NA	intron (NM_031989, intron 13 of 14)	BC200|scRNA|scRNA	6797	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
8253	chr1	39774821	39775150	+	0	NA	exon (NM_001720, exon 2 of 7)	exon (NM_001720, exon 2 of 7)	-3637	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
178211	chr4	142565471	142566210	+	0	NA	intron (NM_003866, intron 2 of 26)	L1MC4a|LINE|L1	-5085	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
34682	chr10	133363171	133363530	+	0	NA	intron (NM_004092, intron 7 of 7)	intron (NM_004092, intron 7 of 7)	-5331	NM_001301828	282969		NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
165596	chr3	101646201	101646600	+	0	NA	Intergenic	AluSp|SINE|Alu	-30030	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
20603	chr1	198907171	198907600	+	0	NA	intron (NR_040073, intron 1 of 2)	intron (NR_040073, intron 1 of 2)	30044	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
233830	chrX	1490071	1490230	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-36388	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
171281	chr3	195893871	195894030	+	0	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	-1166	NM_001308046	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
163202	chr3	50233071	50233450	+	0	NA	intron (NM_001282617, intron 1 of 8)	intron (NM_001282617, intron 1 of 8)	2484	NM_001282617	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
159155	chr3	12763101	12763500	+	0	NA	intron (NM_001284406, intron 1 of 11)	intron (NM_001284406, intron 1 of 11)	-4041	NM_018306	55287		NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
122852	chr19	50477771	50478150	+	0	NA	exon (NM_175063, exon 2 of 8)	exon (NM_175063, exon 2 of 8)	-1112	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
16112	chr1	153638071	153638430	+	0	NA	intron (NM_001244664, intron 2 of 3)	intron (NM_001244664, intron 2 of 3)	-3889	NM_001024210	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
108851	chr18	79236901	79237100	+	0	NA	intron (NM_198531, intron 11 of 29)	intron (NM_198531, intron 11 of 29)	-158930	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
61428	chr13	51823451	51823750	+	0	NA	intron (NM_001351003, intron 3 of 4)	MLT1J1|LTR|ERVL-MaLR	-19437	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
216076	chr8	10734071	10734630	+	0	NA	intron (NR_146188, intron 1 of 2)	intron (NR_146188, intron 1 of 2)	-3839	NM_031439	83595		NM_031439	ENSG00000171056	SOX7	-	SRY-box transcription factor 7	protein-coding
94547	chr17	29588731	29590300	+	0	NA	5' UTR (NM_014030, exon 1 of 20)	5' UTR (NM_014030, exon 1 of 20)	133	NM_014030	28964		NM_014030	ENSG00000108262	GIT1	p95-APP1	GIT ArfGAP 1	protein-coding
194387	chr6	32992001	32992400	+	0	NA	Intergenic	L1PB3|LINE|L1	17391	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
183979	chr5	88734201	88734530	+	0	NA	intron (NM_001364357, intron 3 of 6)	intron (NM_001364357, intron 3 of 6)	-43324	NR_152232	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
174569	chr4	40228351	40229630	+	0	NA	intron (NM_001278360, intron 2 of 3)	intron (NM_001278360, intron 2 of 3)	31959	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
2501	chr1	9691871	9692350	+	0	NA	intron (NM_001350234, intron 2 of 23)	MIR3|SINE|MIR	643	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
186917	chr5	139595871	139596230	+	0	NA	intron (NM_181838, intron 2 of 7)	AluSg|SINE|Alu	34711	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
156648	chr22	41630901	41631830	+	0	NA	intron (NM_001288977, intron 3 of 12)	SVA_D|Retroposon|SVA	10070	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
177516	chr4	118351821	118352280	+	0	NA	intron (NM_003619, intron 1 of 12)	intron (NM_003619, intron 1 of 12)	953	NM_003619	8492		NM_003619	ENSG00000164099	PRSS12	BSSP-3|BSSP3|MRT1	serine protease 12	protein-coding
162539	chr3	48630471	48631030	+	0	NA	intron (NM_134263, intron 9 of 20)	intron (NM_134263, intron 9 of 20)	2948	NR_106882	102465495		NR_106882	ENSG00000284364	MIR6824	hsa-mir-6824	microRNA 6824	ncRNA
12822	chr1	110003871	110004650	+	0	NA	5' UTR (NM_001242675, exon 1 of 17)	5' UTR (NM_001242675, exon 1 of 17)	312	NM_001242675	10768		NM_006621	ENSG00000168710	AHCYL1	DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA	adenosylhomocysteinase like 1	protein-coding
113305	chr19	8566921	8567500	+	0	NA	intron (NM_012335, intron 1 of 27)	AluSg7|SINE|Alu	10232	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
215675	chr8	730451	731650	+	0	NA	intron (NM_207332, intron 1 of 5)	CpG	174	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
93191	chr17	17808871	17809880	+	0	NA	intron (NM_030665, intron 4 of 5)	intron (NM_030665, intron 4 of 5)	4170	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
177831	chr4	125316421	125317000	+	0	NA	exon (NM_001291303, exon 2 of 18)	exon (NM_001291303, exon 2 of 18)	1755	NM_024582	79633		NM_024582	ENSG00000196159	FAT4	CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2	FAT atypical cadherin 4	protein-coding
12993	chr1	110963261	110964580	+	0	NA	promoter-TSS (NM_018372)	promoter-TSS (NM_018372)	2	NM_018372	55791		NM_018372	ENSG00000121931	LRIF1	C1orf103|FSHD3|HBiX1|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
129838	chr2	72859521	72860350	+	0	NA	Intergenic	Intergenic	-27473	NM_003124	6697		NM_003124	ENSG00000116096	SPR	SDR38C1	sepiapterin reductase	protein-coding
173353	chr4	7829751	7830250	+	0	NA	intron (NM_001371091, intron 7 of 17)	L1ME4b|LINE|L1	42308	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
174680	chr4	41888121	41888400	+	0	NA	Intergenic	Intergenic	-5649	NR_104143	101927074		NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA
171000	chr3	194685171	194686380	+	0	NA	promoter-TSS (NM_153690)	promoter-TSS (NM_153690)	-108	NM_153690	131583		NM_153690	ENSG00000185112	FAM43A	-	family with sequence similarity 43 member A	protein-coding
108965	chr18	79526851	79527400	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-52157	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
99210	chr17	49565171	49565330	+	0	NA	intron (NR_103773, intron 1 of 2)	AluSx1|SINE|Alu	8814	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
180246	chr5	1637221	1637880	+	0	NA	Intergenic	Intergenic	-3545	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
63619	chr14	20630171	20631300	+	0	NA	Intergenic	Intergenic	10956	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
93898	chr17	21245151	21246150	+	0	NA	intron (NM_152914, intron 1 of 2)	MIR|SINE|MIR	7760	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
64869	chr14	35300321	35300750	+	0	NA	intron (NM_001282232, intron 1 of 6)	intron (NM_001282232, intron 1 of 6)	8153	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
190889	chr6	2753771	2753930	+	0	NA	intron (NM_001347872, intron 1 of 12)	L1MB8|LINE|L1	-2928	NM_001012418	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
145228	chr20	38919801	38920100	+	0	NA	3' UTR (NM_015568, exon 11 of 11)	3' UTR (NM_015568, exon 11 of 11)	-6467	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
228809	chr9	111916251	111916630	+	0	NA	intron (NM_003358, intron 2 of 8)	intron (NM_003358, intron 2 of 8)	-15660	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
152724	chr22	21661221	21661480	+	0	NA	non-coding (NR_169730, exon 5 of 5)	non-coding (NR_169730, exon 5 of 5)	3590	NR_169733	107985532		NR_169729		LOC107985532	-	uncharacterized LOC107985532	pseudo
151658	chr22	17037121	17037600	+	0	NA	intron (NR_152826, intron 1 of 3)	CpG	790	NR_152826	100130418		NR_015352		CECR7	CYCL|SAHL1	cat eye syndrome chromosome region, candidate 7	ncRNA
158455	chr22	50627621	50629750	+	0	NA	promoter-TSS (NM_001085425)	promoter-TSS (NM_001085425)	-533	NM_001085427	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
115993	chr19	17091551	17092180	+	0	NA	promoter-TSS (NR_145784)	promoter-TSS (NR_145784)	-370	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
79322	chr16	565571	566030	+	0	NA	TTS (NM_145270)	TTS (NM_145270)	-1205	NM_001301159	283948		NM_176677	ENSG00000257108	NHLRC4	-	NHL repeat containing 4	protein-coding
155913	chr22	39559721	39560630	+	0	NA	Intergenic	Intergenic	-10578	NM_021096	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
40580	chr11	64361571	64362330	+	0	NA	exon (NM_001006944, exon 8 of 17)	exon (NM_001006944, exon 8 of 17)	2788	NM_003942	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
68839	chr14	91284321	91284580	+	0	NA	intron (NM_001080414, intron 25 of 29)	intron (NM_001080414, intron 25 of 29)	-30570	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
141527	chr2	241270671	241271130	+	0	NA	intron (NM_005336, intron 1 of 27)	intron (NM_005336, intron 1 of 27)	1065	NM_001320966	3069		NM_005336	ENSG00000115677	HDLBP	HBP|PRO2900|VGL	high density lipoprotein binding protein	protein-coding
99411	chr17	50051001	50051400	+	0	NA	non-coding (NR_038230, exon 3 of 3)	non-coding (NR_038230, exon 3 of 3)	4539	NR_038230	284080		NR_038230	ENSG00000246640	PICART1	-	p53 inducible cancer associated RNA transcript 1	ncRNA
155282	chr22	38100851	38101380	+	0	NA	intron (NM_025045, intron 4 of 13)	L1ME2|LINE|L1	9569	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
175695	chr4	77070501	77070700	+	0	NA	intron (NM_006835, intron 1 of 6)	intron (NM_006835, intron 1 of 6)	4310	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
9248	chr1	46183521	46183780	+	0	NA	intron (NM_005727, intron 3 of 8)	intron (NM_005727, intron 3 of 8)	-7162	NM_001303427	110117499		NM_001303427	ENSG00000278139	P3R3URF-PIK3R3	LOC110117498-PIK3R3	P3R3URF-PIK3R3 readthrough	protein-coding
169718	chr3	172137071	172137450	+	0	NA	intron (NM_022763, intron 3 of 25)	intron (NM_022763, intron 3 of 25)	96729	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
14703	chr1	145925951	145926050	+	0	NA	promoter-TSS (NR_147182)	promoter-TSS (NR_147182)	-831	NR_147182	105371260		NR_147182	ENSG00000234222	LIX1L-AS1	-	LIX1L antisense RNA 1	ncRNA
88744	chr16	86508701	86508900	+	0	NA	promoter-TSS (NR_033925)	promoter-TSS (NR_033925)	60	NR_033925	400550		NR_033925	ENSG00000268388	FENDRR	FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21	FOXF1 adjacent non-coding developmental regulatory RNA	ncRNA
151908	chr22	18961651	18961750	+	0	NA	Intergenic	Intergenic	-8798	NR_045121	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
177385	chr4	112167401	112168000	+	0	NA	intron (NM_152400, intron 1 of 1)	L2c|LINE|L2	22246	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
15180	chr1	149128801	149129570	+	0	NA	Intergenic	Intergenic	-46874	NM_001037675	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
32601	chr10	103586451	103586850	+	0	NA	intron (NM_004210, intron 4 of 5)	intron (NM_004210, intron 4 of 5)	-69208	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
163028	chr3	49809171	49809330	+	0	NA	intron (NM_003335, intron 17 of 23)	intron (NM_003335, intron 17 of 23)	-3005	NR_049825	100847079		NR_049825	ENSG00000283726	MIR5193	mir-5193	microRNA 5193	ncRNA
64209	chr14	23053221	23053680	+	0	NA	intron (NM_144985, intron 7 of 12)	intron (NM_144985, intron 7 of 12)	4088	NM_144985	64403		NM_022478	ENSG00000139880	CDH24	CDH11L	cadherin 24	protein-coding
223441	chr8	143970651	143970750	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	2829	NM_201378	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
90534	chr17	1484221	1485200	+	0	NA	intron (NM_001080779, intron 1 of 31)	MIR3|SINE|MIR	691	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
60870	chr13	46046871	46047230	+	0	NA	intron (NM_001330565, intron 1 of 18)	intron (NM_001330565, intron 1 of 18)	5696	NM_001382208	23091		NM_015070	ENSG00000123200	ZC3H13	KIAA0853|Xio	zinc finger CCCH-type containing 13	protein-coding
111420	chr19	3780901	3781580	+	0	NA	intron (NM_139355, intron 8 of 13)	MER58B|DNA|hAT-Charlie	5141	NM_139355	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
199672	chr6	122465721	122466180	+	0	NA	intron (NM_020755, intron 1 of 9)	HAL1|LINE|L1	5857	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
80767	chr16	3173921	3174480	+	0	NA	Intergenic	Intergenic	-14004	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
47222	chr12	944121	944380	+	0	NA	intron (NR_123713, intron 1 of 13)	AluJr|SINE|Alu	5444	NM_001297422	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
125460	chr2	12262751	12262930	+	0	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	63710	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
7651	chr1	35634651	35635050	+	0	NA	intron (NM_001199779, intron 2 of 5)	AluJr4|SINE|Alu	-3313	NM_001199780	5690		NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome 20S subunit beta 2	protein-coding
167615	chr3	129578041	129579330	+	0	NA	intron (NM_015103, intron 8 of 35)	intron (NM_015103, intron 8 of 35)	27991	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
59583	chr13	27463521	27463780	+	0	NA	Intergenic	Intergenic	-13048	NM_001166263	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
152623	chr22	21436101	21436300	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	18829	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
170114	chr3	183180801	183181000	+	0	NA	intron (NM_015078, intron 27 of 29)	intron (NM_015078, intron 27 of 29)	-18166	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
167488	chr3	129166821	129167080	+	0	NA	TTS (NM_001127192)	TTS (NM_001127192)	-5720	NM_001204890	100534599		NM_001204890	ENSG00000261796	ISY1-RAB43	ISY1	ISY1-RAB43 readthrough	protein-coding
136276	chr2	174696221	174696500	+	0	NA	Intergenic	MIR|SINE|MIR	-13447	NM_001375835	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
144258	chr20	34538571	34539080	+	0	NA	intron (NM_001382366, intron 3 of 3)	intron (NM_001382366, intron 3 of 3)	-8019	NM_181509	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
162300	chr3	47413871	47414930	+	0	NA	TTS (NM_015466)	TTS (NM_015466)	33379	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
203216	chr6	168035971	168036130	+	0	NA	intron (NM_030615, intron 4 of 8)	intron (NM_030615, intron 4 of 8)	18177	NM_005355	3834		NM_005355	ENSG00000125337	KIF25	KNSL3	kinesin family member 25	protein-coding
16772	chr1	155488501	155488700	+	0	NA	intron (NM_018489, intron 2 of 27)	AluSx3|SINE|Alu	55420	NR_034180	645682		NR_034180	ENSG00000237872	POU5F1P4	OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1	POU class 5 homeobox 1 pseudogene 4	pseudo
125791	chr2	23924821	23925080	+	0	NA	intron (NM_001354107, intron 1 of 28)	intron (NM_001354107, intron 1 of 28)	2173	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
176096	chr4	82984471	82984730	+	0	NA	non-coding (NR_110253, exon 2 of 11)	non-coding (NR_110253, exon 2 of 11)	26223	NM_194282	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
215143	chr7	155457501	155458100	+	0	NA	promoter-TSS (NM_001427)	promoter-TSS (NM_001427)	-329	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
143738	chr20	32356051	32356700	+	0	NA	Intergenic	AluSx|SINE|Alu	-1956	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
145002	chr20	37534321	37535180	+	0	NA	Intergenic	Intergenic	-6819	NM_001167820	10904		NM_006698	ENSG00000166619	BLCAP	BC10	BLCAP apoptosis inducing factor	protein-coding
50854	chr12	49133071	49133300	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	-1790	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
215392	chr7	157481221	157481680	+	0	NA	intron (NR_110157, intron 2 of 3)	(GGTGTGT)n|Simple_repeat|Simple_repeat	15219	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
35842	chr11	2308401	2309230	+	0	NA	intron (NM_139022, intron 4 of 9)	intron (NM_139022, intron 4 of 9)	-5675	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
170636	chr3	187032851	187033380	+	0	NA	intron (NM_003032, intron 1 of 6)	intron (NM_003032, intron 1 of 6)	-5603	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
52741	chr12	56634221	56635600	+	0	NA	intron (NM_001351156, intron 1 of 30)	CpG	1449	NM_001351156	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
171533	chr3	196727001	196727500	+	0	NA	intron (NM_017861, intron 3 of 5)	intron (NM_017861, intron 3 of 5)	-12607	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
207855	chr7	50356401	50356600	+	0	NA	intron (NM_001291840, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	37452	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
39613	chr11	61392101	61393950	+	0	NA	intron (NM_016499, intron 1 of 4)	intron (NM_016499, intron 1 of 4)	438	NM_001173990	51259		NM_016499	ENSG00000187049	TMEM216	HSPC244	transmembrane protein 216	protein-coding
156254	chr22	40406551	40407200	+	0	NA	intron (NM_001350047, intron 9 of 20)	intron (NM_001350047, intron 9 of 20)	36281	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
6504	chr1	28512871	28513180	+	0	NA	intron (NM_001048199, intron 3 of 11)	AluYc|SINE|Alu	4467	NR_004404	26768		NR_004404	ENSG00000200087	SNORA73B	105A|E1c|RNU105A|RNU17B|U17B	small nucleolar RNA, H/ACA box 73B	snoRNA
106450	chr18	13676501	13677100	+	0	NA	intron (NM_001098801, intron 3 of 4)	L1MC4|LINE|L1	35042	NM_001276251	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
24070	chr1	235316501	235316780	+	0	NA	intron (NM_016374, intron 2 of 23)	AluSx1|SINE|Alu	-10576	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
81482	chr16	8935801	8936930	+	0	NA	intron (NM_003470, intron 1 of 30)	(TCCTC)n|Simple_repeat|Simple_repeat	274	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
122956	chr19	50747101	50747300	+	0	NA	Intergenic	AluSx|SINE|Alu	-23264	NM_001506	2854		NM_001506	ENSG00000142511	GPR32	DRV1|RVDR1	G protein-coupled receptor 32	protein-coding
1478	chr1	2697401	2697800	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-64584	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
76743	chr15	76336321	76336930	+	0	NA	promoter-TSS (NM_145805)	promoter-TSS (NM_145805)	-148	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
92403	chr17	8347001	8347400	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7360	NM_153007	146852		NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
179522	chr4	184823071	184823230	+	0	NA	intron (NM_001381885, intron 1 of 21)	intron (NM_001381885, intron 1 of 21)	2818	NM_001995	2180		NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long chain family member 1	protein-coding
6736	chr1	30707771	30709050	+	0	NA	Intergenic	L1MA9|LINE|L1	-10362	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
23649	chr1	230970601	230971200	+	0	NA	intron (NM_024525, intron 1 of 22)	intron (NM_024525, intron 1 of 22)	7961	NM_001376509	79573		NM_024525	ENSG00000143643	TTC13	-	tetratricopeptide repeat domain 13	protein-coding
36980	chr11	11845701	11846100	+	0	NA	intron (NM_001372101, intron 1 of 26)	L3|LINE|CR1	3928	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
73034	chr15	40808921	40809180	+	0	NA	intron (NM_032850, intron 2 of 11)	intron (NM_032850, intron 2 of 11)	-1577	NM_018163	55192		NM_018163	ENSG00000104129	DNAJC17	-	DnaJ heat shock protein family (Hsp40) member C17	protein-coding
217682	chr8	30112201	30112600	+	0	NA	intron (NM_001128208, intron 3 of 3)	AluSx|SINE|Alu	16992	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
161267	chr3	39272401	39272800	+	0	NA	intron (NM_001171174, intron 1 of 1)	intron (NM_001171174, intron 1 of 1)	7436	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
7914	chr1	37481421	37482480	+	0	NA	intron (NM_001323550, intron 4 of 5)	intron (NM_001323550, intron 4 of 5)	1720	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
222100	chr8	130675501	130675850	+	0	NA	Intergenic	Intergenic	-232001	NM_001362925	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
153436	chr22	25071051	25071350	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	41492	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
200662	chr6	137103021	137103280	+	0	NA	Intergenic	Intergenic	-57970	NM_014432	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
74378	chr15	58864951	58865580	+	0	NA	Intergenic	Intergenic	68414	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
220783	chr8	102584821	102586380	+	0	NA	Intergenic	Intergenic	34011	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
91435	chr17	4742321	4742850	+	0	NA	intron (NM_032265, intron 5 of 12)	intron (NM_032265, intron 5 of 12)	2570	NM_032265	84225		NM_032265	ENSG00000141497	ZMYND15	SPGF14	zinc finger MYND-type containing 15	protein-coding
122606	chr19	49798921	49799180	+	0	NA	intron (NM_014203, intron 8 of 23)	MSR1|Satellite|Satellite	7184	NR_106857	102465479		NR_106857	ENSG00000276270	MIR6799	hsa-mir-6799	microRNA 6799	ncRNA
176068	chr4	82702151	82702250	+	0	NA	intron (NM_024906, intron 2 of 3)	AluSx|SINE|Alu	51230	NR_030301	693160		NR_030301	ENSG00000207746	MIR575	MIRN575|hsa-mir-575	microRNA 575	ncRNA
139746	chr2	229872851	229873350	+	0	NA	intron (NM_001348327, intron 2 of 41)	intron (NM_001348327, intron 2 of 41)	48579	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
207961	chr7	55086621	55086980	+	0	NA	intron (NM_001346941, intron 1 of 21)	intron (NM_001346941, intron 1 of 21)	-23039	NM_001346900	1956		NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|ERRP|HER1|NISBD2|PIG61|mENA	epidermal growth factor receptor	protein-coding
210981	chr7	101854501	101855300	+	0	NA	intron (NM_181552, intron 1 of 23)	AluSz|SINE|Alu	37274	NM_181552	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
113817	chr19	10603201	10603800	+	0	NA	intron (NM_001145056, intron 1 of 21)	intron (NM_001145056, intron 1 of 21)	1045	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
153897	chr22	30298651	30298950	+	0	NA	intron (NM_031937, intron 3 of 8)	intron (NM_031937, intron 3 of 8)	-9295	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
54415	chr12	90280671	90280830	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-12568	NR_135018	105369893		NR_135018	ENSG00000258183	LINC02392	-	long intergenic non-protein coding RNA 2392	ncRNA
91957	chr17	7383721	7385030	+	0	NA	intron (NM_001251902, intron 6 of 12).2	CpG-10616	3286	NM_003985	8711		NM_003985	ENSG00000174292	TNK1	KOS1	tyrosine kinase non receptor 1	protein-coding
73817	chr15	48950421	48950680	+	0	NA	intron (NM_203349, intron 1 of 11)	MER103C|DNA|hAT-Charlie	13369	NM_203349	399694		NM_203349	ENSG00000185634	SHC4	RaLP|SHCD	SHC adaptor protein 4	protein-coding
52978	chr12	57483571	57484680	+	0	NA	intron (NM_001319850, intron 1 of 20)	AluSx3|SINE|Alu	-3943	NM_004990	4141		NM_004990	ENSG00000166986	MARS1	CMT2U|ILFS2|ILLD|MARS|METRS|MRS|MTRNS|SPG70|TTD9	methionyl-tRNA synthetase 1	protein-coding
192331	chr6	22148171	22148600	+	0	NA	intron (NR_015410, intron 9 of 11)	intron (NR_015410, intron 9 of 11)	-1192	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
43516	chr11	81787601	81788050	+	0	NA	Intergenic	Intergenic	103011	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
116879	chr19	18663951	18664650	+	0	NA	exon (NM_001345982, exon 3 of 4)	exon (NM_001345982, exon 3 of 4)	-19380	NM_015321	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
47714	chr12	6452901	6454700	+	0	NA	intron (NR_147127, intron 3 of 8)	AluSq2|SINE|Alu	1758	NR_147127	55080		NM_018009	ENSG00000139192	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein like	protein-coding
74667	chr15	61858701	61859050	+	0	NA	intron (NM_017684, intron 80 of 82)	intron (NM_017684, intron 80 of 82)	128957	NR_146448	100506530		NR_146448	ENSG00000259284	LINC02349	-	long intergenic non-protein coding RNA 2349	ncRNA
192004	chr6	16325121	16325630	+	0	NA	intron (NM_000332, intron 8 of 8)	AluSx|SINE|Alu	86788	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
141845	chr20	536051	536150	+	0	NA	intron (NM_177559, intron 1 of 13)	intron (NM_177559, intron 1 of 13)	7690	NM_001895	1457		NM_001895	ENSG00000101266	CSNK2A1	CK2A1|CKII|Cka1|Cka2|OCNDS	casein kinase 2 alpha 1	protein-coding
20970	chr1	202571771	202572030	+	0	NA	intron (NM_032103, intron 11 of 11)	intron (NM_032103, intron 11 of 11)	31786	NM_001197131	4660		NM_002481	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1 regulatory subunit 12B	protein-coding
128167	chr2	49229751	49229850	+	0	NA	Intergenic	L1PA6|LINE|L1	-75285	NM_000145	2492		NM_000145	ENSG00000170820	FSHR	FSHR1|FSHRO|LGR1|ODG1	follicle stimulating hormone receptor	protein-coding
19445	chr1	174789501	174789900	+	0	NA	intron (NM_001366447, intron 18 of 20)	intron (NM_001366447, intron 18 of 20)	-10038	NM_001330989	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
28288	chr10	46077151	46077500	+	0	NA	Intergenic	Intergenic	-31056	NM_002443	4477		NM_002443	ENSG00000263639	MSMB	HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94	microseminoprotein beta	protein-coding
47675	chr12	6343021	6343630	+	0	NA	Intergenic	AluJb|SINE|Alu	-1249	NM_001346092	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
141370	chr2	240690671	240691730	+	0	NA	promoter-TSS (NM_198998)	promoter-TSS (NM_198998)	-666	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
198260	chr6	99520821	99522130	+	0	NA	intron (NM_001195131, intron 1 of 3)	intron (NM_001195131, intron 1 of 3)	426	NM_001195131	100130890		NM_001195131	ENSG00000279170	TSTD3	-	thiosulfate sulfurtransferase like domain containing 3	protein-coding
184344	chr5	96960671	96961480	+	0	NA	intron (NM_175920, intron 1 of 17)	intron (NM_175920, intron 1 of 17)	2642	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
5950	chr1	26891721	26892850	+	0	NA	intron (NM_022078, intron 6 of 6)	intron (NM_022078, intron 6 of 6)	-2002	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
151371	chr21	45881471	45881830	+	0	NA	intron (NM_001382276, intron 6 of 18)	L1MA8|LINE|L1	33500	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
220684	chr8	101225151	101225800	+	0	NA	Intergenic	Intergenic	-19411	NM_001267709	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
86219	chr16	58105821	58106280	+	0	NA	Intergenic	LTR82B|LTR|ERVL	23331	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
44453	chr11	104917701	104918880	+	0	NA	promoter-TSS (NR_034079)	promoter-TSS (NR_034079)	-115	NR_034078	643733		NR_034078	ENSG00000291173	CASP4LP	CASP17P	caspase 4 like, pseudogene	pseudo
182524	chr5	65485121	65485780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3530	NM_197941	11174		NM_014273	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein-coding
103386	chr17	78146801	78147080	+	0	NA	intron (NM_001163075, intron 2 of 4)	intron (NM_001163075, intron 2 of 4)	555	NM_001163075	100141515		NM_001163075	ENSG00000187997	C17orf99	IL-40|UNQ464	chromosome 17 open reading frame 99	protein-coding
28939	chr10	63210821	63211180	+	0	NA	intron (NM_001322258, intron 7 of 24)	intron (NM_001322258, intron 7 of 24)	58223	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
147874	chr20	62827421	62827980	+	0	NA	intron (NM_001853, intron 16 of 31)	intron (NM_001853, intron 16 of 31)	10650	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
204153	chr7	2386151	2386450	+	0	NA	Intergenic	Intergenic	-17311	NM_001243795	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
237554	chrX	120629671	120630880	+	0	NA	promoter-TSS (NM_001011551)	promoter-TSS (NM_001011551)	-125	NM_152692	29071		NM_152692	ENSG00000171155	C1GALT1C1	AHUS8|C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS	C1GALT1 specific chaperone 1	protein-coding
229944	chr9	126666221	126666480	+	0	NA	intron (NM_001174147, intron 2 of 7)	L2c|LINE|L2	52422	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
206323	chr7	30292671	30293130	+	0	NA	intron (NM_147128, intron 1 of 4)	L2a|LINE|L2	-3010	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
211059	chr7	102463271	102463430	+	0	NA	intron (NM_017621, intron 1 of 2)	AluSx|SINE|Alu	1513	NM_017621	54784		NM_017621	ENSG00000160993	ALKBH4	ABH4	alkB homolog 4, lysine demethylase	protein-coding
31707	chr10	97648701	97649700	+	0	NA	intron (NM_018425, intron 1 of 8)	intron (NM_018425, intron 1 of 8)	8514	NM_018425	55361		NM_018425	ENSG00000155252	PI4K2A	NEDMSB|PI4KII|PIK42A	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
21616	chr1	206572071	206572630	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	15186	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
113311	chr19	8575121	8576200	+	0	NA	intron (NM_012335, intron 1 of 27)	intron (NM_012335, intron 1 of 27)	1782	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
153391	chr22	24607201	24608550	+	0	NA	intron (NM_001288833, intron 1 of 15)	intron (NM_001288833, intron 1 of 15)	4682	NM_001288833	2678		NM_005265	ENSG00000100031	GGT1	CD224|D22S672|D22S732|GGT|GGT 1|GGTD|GTG	gamma-glutamyltransferase 1	protein-coding
221339	chr8	123157101	123158700	+	0	NA	intron (NM_001363151, intron 19 of 19)	intron (NM_001363151, intron 19 of 19)	-21147	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
206247	chr7	29207301	29207830	+	0	NA	intron (NR_120522, intron 1 of 2)	intron (NR_120522, intron 1 of 2)	1405	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
192837	chr6	27142371	27142530	+	0	NA	intron (NM_080593, intron 1 of 1)	AluSq10|SINE|Alu	3168	NM_003495	8294		NM_003495	ENSG00000276180	H4C9	H4-16|H4/m|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4FM|H4M|HIST1H4I|TEBIVANED4|TEVANED4	H4 clustered histone 9	protein-coding
14226	chr1	143216571	143216950	+	0	NA	Intergenic	Intergenic	205832	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
136249	chr2	174623551	174624130	+	0	NA	intron (NM_001077269, intron 1 of 7)	MLT1F2|LTR|ERVL-MaLR	10765	NM_001375837	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
85244	chr16	48353521	48354330	+	0	NA	3' UTR (NM_001300948, exon 14 of 14)	3' UTR (NM_001300948, exon 14 of 14)	11962	NM_001006610	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
226596	chr9	73153921	73154280	+	0	NA	intron (NM_000700, intron 1 of 12)	L2c|LINE|L2	2235	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
200916	chr6	139142821	139143350	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	8005	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
232754	chr9	136663221	136663530	+	0	NA	intron (NR_045110, intron 1 of 9)	intron (NR_045110, intron 1 of 9)	459	NR_045110	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
219641	chr8	80231921	80232680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-9089	NR_049894	100847056		NR_049894	ENSG00000265588	MIR5708	-	microRNA 5708	ncRNA
124898	chr2	8472301	8473230	+	0	NA	Intergenic	Intergenic	111027	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
214989	chr7	152145951	152146330	+	0	NA	intron (NM_170606, intron 53 of 58)	intron (NM_170606, intron 53 of 58)	71103	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
143390	chr20	29089451	29089550	+	0	NA	intron (NR_132316, intron 2 of 5)	L1M4|LINE|L1	9110	NR_132316	102723316		NR_132316		FRG1DP	-	FSHD region gene 1 family member D, pseudogene	pseudo
238425	chrX	150716821	150717160	+	0	NA	intron (NM_001353994, intron 3 of 15)	MER103C|DNA|hAT-Charlie	5235	NM_001353996	8776		NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
231628	chr9	131587921	131588480	+	0	NA	intron (NM_001377935, intron 20 of 26)	intron (NM_001377935, intron 20 of 26)	42677	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
176172	chr4	83283021	83283330	+	0	NA	intron (NM_015697, intron 1 of 6)	intron (NM_015697, intron 1 of 6)	1623	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
12499	chr1	108049501	108049930	+	0	NA	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-84535	NM_006113	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
160587	chr3	31213661	31214700	+	0	NA	Intergenic	Intergenic	-52393	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
187724	chr5	143412951	143413250	+	0	NA	intron (NM_001018075, intron 1 of 8)	L2a|LINE|L2	-7745	NM_001364180	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
15833	chr1	151343621	151343900	+	0	NA	exon (NM_001379417, exon 9 of 11)	exon (NM_001379417, exon 9 of 11)	3096	NM_001379416	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
151877	chr22	18734851	18735350	+	0	NA	intron (NR_165635, intron 1 of 11)	intron (NR_165635, intron 1 of 11)	1165	NR_136561	642643		NR_136561	ENSG00000182824	FAM230E	LINC01662	family with sequence similarity 230 member E	ncRNA
190767	chr6	492671	493430	+	0	NA	intron (NM_018303, intron 25 of 27)	intron (NM_018303, intron 25 of 27)	101298	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
54632	chr12	92789521	92789780	+	0	NA	intron (NM_003566, intron 21 of 28)	L1PA6|LINE|L1	86661	NM_001377329	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
195439	chr6	36963701	36965880	+	0	NA	TTS (NM_001199159)	TTS (NM_001199159)	10052	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
205558	chr7	20668321	20668680	+	0	NA	TTS (NM_001163993)	TTS (NM_001163993)	21170	NM_001163993	340273		NM_178559	ENSG00000004846	ABCB5	ABCB5alpha|ABCB5beta|EST422562	ATP binding cassette subfamily B member 5	protein-coding
79092	chr16	182921	183650	+	0	NA	Intergenic	Intergenic	2826	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
91612	chr17	5380651	5381380	+	0	NA	intron (NM_004703, intron 16 of 17)	intron (NM_004703, intron 16 of 17)	-38626	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
78517	chr15	92941851	92942180	+	0	NA	intron (NM_001042572, intron 8 of 12)	intron (NM_001042572, intron 8 of 12)	37616	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
48816	chr12	12081851	12082150	+	0	NA	intron (NM_001370269, intron 4 of 7)	intron (NM_001370269, intron 4 of 7)	10532	NM_030766	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
111952	chr19	4803401	4804300	+	0	NA	Intergenic	AluSx1|SINE|Alu	12116	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
10141	chr1	59892971	59893530	+	0	NA	TTS (NM_000775)	TTS (NM_000775)	33523	NM_000775	1573		NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding
232903	chr9	136855801	136856200	+	0	NA	intron (NM_206920, intron 13 of 26)	intron (NM_206920, intron 13 of 26)	3654	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
178205	chr4	142551551	142551850	+	0	NA	intron (NM_003866, intron 2 of 26)	LTR85a|LTR|Gypsy?	9055	NM_001385338	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
22414	chr1	220044101	220044730	+	0	NA	intron (NM_004446, intron 1 of 31)	intron (NM_004446, intron 1 of 31)	2090	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
45541	chr11	118765401	118765830	+	0	NA	intron (NM_004397, intron 5 of 13)	AluSx|SINE|Alu	25333	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
41549	chr11	66300451	66300750	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	8706	NM_153266	256472		NM_153266	ENSG00000179292	TMEM151A	DYT36|EKD3|TMEM151	transmembrane protein 151A	protein-coding
65192	chr14	49631401	49631830	+	0	NA	intron (NM_018139, intron 1 of 2)	AluY|SINE|Alu	2371	NM_001378453	55172		NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
118253	chr19	35251151	35251800	+	0	NA	intron (NM_001260490, intron 2 of 6)	MIR|SINE|MIR	2473	NM_001385215	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
187623	chr5	142980771	142980930	+	0	NA	intron (NR_146198, intron 11 of 22)	L1ME3|LINE|L1	-111940	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
190510	chr5	180493871	180495380	+	0	NA	non-coding (NR_163437, exon 1 of 13)	non-coding (NR_163437, exon 1 of 13)	246	NR_163437	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
192496	chr6	24969801	24970000	+	0	NA	intron (NM_001286446, intron 1 of 13)	L2a|LINE|L2	-33940	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
66300	chr14	61399951	61400380	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	78722	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
129194	chr2	68197171	68197680	+	0	NA	intron (NM_000945, intron 2 of 5)	L1ME2|LINE|L1	39537	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
10848	chr1	77960221	77960550	+	0	NA	non-coding (NR_146540, exon 15 of 23)	non-coding (NR_146540, exon 15 of 23)	18687	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
111602	chr19	4099951	4100250	+	0	NA	intron (NM_030662, intron 6 of 10)	AluY|SINE|Alu	24022	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
232653	chr9	136480671	136481130	+	0	NA	intron (NM_014866, intron 1 of 31)	intron (NM_014866, intron 1 of 31)	-2110	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
114082	chr19	11104901	11105100	+	0	NA	intron (NM_001195800, intron 3 of 15)	MIR|SINE|MIR	-8474	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
108728	chr18	77090571	77090930	+	0	NA	intron (NM_001025100, intron 2 of 3)	L2|LINE|L2	42033	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
106044	chr18	8755071	8756130	+	0	NA	intron (NM_015210, intron 4 of 16)	intron (NM_015210, intron 4 of 16)	38219	NM_015210	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
25123	chr10	4033421	4034100	+	0	NA	Intergenic	Intergenic	-17966	NR_120632								
16434	chr1	154570701	154571100	+	0	NA	intron (NM_000748, intron 4 of 5)	intron (NM_000748, intron 4 of 5)	3122	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
212328	chr7	127388651	127388950	+	0	NA	intron (NM_176814, intron 2 of 5)	intron (NM_176814, intron 2 of 5)	3908	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
106922	chr18	26189451	26189850	+	0	NA	intron (NM_144662, intron 6 of 6)	L1MA2|LINE|L1	-36795	NR_121653	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
213281	chr7	134710821	134711750	+	0	NA	Intergenic	MLT2D|LTR|ERVL	64432	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
28106	chr10	43394351	43394450	+	0	NA	intron (NM_001098204, intron 3 of 3)	intron (NM_001098204, intron 3 of 3)	2431	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
133763	chr2	127638551	127639030	+	0	NA	3' UTR (NM_017980, exon 10 of 10)	3' UTR (NM_017980, exon 10 of 10)	-7074	NM_001161415	2840		NM_005291	ENSG00000144230	GPR17	-	G protein-coupled receptor 17	protein-coding
90115	chr16	90108101	90108630	+	0	NA	intron (NR_126161, intron 2 of 3)	MER4A1_|LTR|ERV1	6101	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
63539	chr14	19053621	19053950	+	0	NA	Intergenic	Intergenic	-8587	NR_110526	503639		NM_001013701		DUXAP10	LNMAT1	double homeobox A pseudogene 10	pseudo
183842	chr5	86986971	86987130	+	0	NA	Intergenic	Intergenic	127904	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
87846	chr16	75657071	75657230	+	0	NA	non-coding (NR_144545, exon 3 of 3)	non-coding (NR_144545, exon 3 of 3)	9377	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
129929	chr2	73690701	73691000	+	0	NA	Intergenic	Intergenic	10490	NR_132338	51471		NM_016347		NAT8B	CML2|Hcml2|NAT8BP	N-acetyltransferase 8B (putative, gene/pseudogene)	pseudo
84310	chr16	30099771	30099930	+	0	NA	intron (NR_135192, intron 1 of 1)	(AC)n|Simple_repeat|Simple_repeat	3420	NR_135192	101928595		NR_135192	ENSG00000250616	YPEL3-DT	-	YPEL3 divergent transcript	ncRNA
192468	chr6	24925951	24926800	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	9585	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
128239	chr2	54456901	54457900	+	0	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	1073	NM_003128	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
51647	chr12	53026971	53027400	+	0	NA	intron (NM_001300821, intron 6 of 14)	AluSc|SINE|Alu	-19806	NM_198316	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
63768	chr14	21252171	21252580	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluSz|SINE|Alu	17067	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
29227	chr10	69056171	69056530	+	0	NA	Intergenic	Intergenic	-31253	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
94799	chr17	31159901	31160100	+	0	NA	intron (NM_001042492, intron 3 of 57)	intron (NM_001042492, intron 3 of 57)	65023	NM_001042492	4763		NM_000267	ENSG00000196712	NF1	NFNS|VRNF|WSS	neurofibromin 1	protein-coding
193151	chr6	29635751	29635850	+	0	NA	Intergenic	Intergenic	-2617	NM_001470	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
62055	chr13	91358601	91359000	+	0	NA	Intergenic	Intergenic	7486	NR_029508	407048		NR_029508	ENSG00000283705	MIR92A1	C13orf25|MIR17HG|MIR92-1|MIRH1|MIRHG1|MIRN92-1|MIRN92A-1|MIRN92A1|miRNA92-1|mir-92a-1	microRNA 92a-1	ncRNA
116846	chr19	18599771	18600130	+	0	NA	intron (NM_004750, intron 1 of 8)	intron (NM_004750, intron 1 of 8)	6849	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
16252	chr1	153965771	153966600	+	0	NA	intron (NM_001271960, intron 1 of 4)	Tigger19b|DNA|TcMar-Tigger	1540	NM_014437	27173		NM_014437	ENSG00000143570	SLC39A1	ZIP1|ZIRTL	solute carrier family 39 member 1	protein-coding
236224	chrX	65707351	65708030	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	40036	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
214548	chr7	150527021	150527330	+	0	NA	Intergenic	L1M3|LINE|L1	12303	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
161139	chr3	38649171	38650250	+	0	NA	promoter-TSS (NM_000335)	promoter-TSS (NM_000335)	-23	NM_198056	6331		NM_000335	ENSG00000183873	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	sodium voltage-gated channel alpha subunit 5	protein-coding
34338	chr10	132184901	132186020	+	0	NA	TTS (NM_001323086)	TTS (NM_001323086)	-1488	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
221033	chr8	116705951	116706050	+	0	NA	intron (NM_003756, intron 2 of 7)	intron (NM_003756, intron 2 of 7)	49823	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
139779	chr2	230223771	230223930	+	0	NA	intron (NM_001378444, intron 1 of 19)	intron (NM_001378444, intron 1 of 19)	1786	NM_001185015	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
98102	chr17	45608451	45608750	+	0	NA	Intergenic	Intergenic	-6738	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
89681	chr16	89381621	89382180	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-49018	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
209777	chr7	87341271	87341780	+	0	NA	non-coding (NR_015381, exon 2 of 3)	non-coding (NR_015381, exon 2 of 3)	3967	NR_015381	11257		NM_007233	ENSG00000182165	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1|TP53LC12	TP53 target 1	ncRNA
33074	chr10	110889071	110889780	+	0	NA	intron (NM_145341, intron 7 of 12)	intron (NM_145341, intron 7 of 12)	-8665	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
176404	chr4	89024101	89024730	+	0	NA	intron (NM_014883, intron 2 of 23)	intron (NM_014883, intron 2 of 23)	32770	NM_014883	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
133664	chr2	127064501	127065650	+	0	NA	intron (NM_139346, intron 6 of 15)	intron (NM_139346, intron 6 of 15)	16990	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
132302	chr2	105209651	105209830	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-32003	NM_007227	11250		NM_007227	ENSG00000135973	GPR45	PSP24|PSP24(ALPHA)|PSP24A	G protein-coupled receptor 45	protein-coding
103501	chr17	78411851	78412650	+	0	NA	intron (NR_110601, intron 6 of 8)	intron (NR_110601, intron 6 of 8)	33601	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
213000	chr7	131000821	131001500	+	0	NA	intron (NR_109855, intron 2 of 4)	intron (NR_109855, intron 2 of 4)	87696	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
136027	chr2	172454801	172455400	+	0	NA	intron (NM_001365530, intron 1 of 25)	MLT1D|LTR|ERVL-MaLR	10922	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
160806	chr3	33006171	33006930	+	0	NA	intron (NM_000404, intron 15 of 15)	intron (NM_000404, intron 15 of 15)	54906	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
211353	chr7	104955351	104955900	+	0	NA	Intergenic	AluJb|SINE|Alu	-28980	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
206029	chr7	26853851	26854030	+	0	NA	intron (NM_003930, intron 3 of 12)	intron (NM_003930, intron 3 of 12)	3783	NM_001303468	8935		NM_003930	ENSG00000005020	SKAP2	PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R	src kinase associated phosphoprotein 2	protein-coding
157524	chr22	45397721	45398100	+	0	NA	intron (NM_148674, intron 6 of 24)	LTR28C|LTR|ERV1	15689	NM_148674	27127		NM_148674	ENSG00000077935	SMC1B	SMC1BETA|SMC1L2	structural maintenance of chromosomes 1B	protein-coding
124866	chr2	8297651	8297750	+	0	NA	intron (NR_152741, intron 4 of 9)	ERV3-16A3_I-int|LTR|ERVL	30719	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
223712	chr8	144453701	144454150	+	0	NA	intron (NM_138496, intron 2 of 4)	intron (NM_138496, intron 2 of 4)	8614	NR_162109	113218512		NR_162109		MIR10400	-	microRNA 10400	ncRNA
194335	chr6	32852761	32854910	+	0	NA	promoter-TSS (NM_000593)	promoter-TSS (NM_000593)	-131	NM_000593	6890		NM_000593	ENSG00000168394	TAP1	ABC17|ABCB2|APT1|D6S114E|PSF-1|PSF1|RING4|TAP1*0102N|TAP1N	transporter 1, ATP binding cassette subfamily B member	protein-coding
226568	chr9	72477071	72477430	+	0	NA	Intergenic	Intergenic	-44358	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
25788	chr10	11169771	11170380	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	5045	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
24463	chr1	243916951	243918130	+	0	NA	intron (NR_033883, intron 1 of 11)	CpG	138	NR_033883	339529		NR_033883	ENSG00000226828	LINC02774	-	long intergenic non-protein coding RNA 2774	ncRNA
127819	chr2	44936901	44937100	+	0	NA	intron (NR_147194, intron 1 of 2)	intron (NR_147194, intron 1 of 2)	1888	NR_147194	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
229022	chr9	114082521	114082800	+	0	NA	Intergenic	Intergenic	-4360	NM_001633	259		NM_001633	ENSG00000106927	AMBP	A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI	alpha-1-microglobulin/bikunin precursor	protein-coding
8261	chr1	39798071	39798230	+	0	NA	Intergenic	AluJr4|SINE|Alu	9174	NR_135805	101929536		NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
174706	chr4	42630171	42630530	+	0	NA	intron (NM_001105529, intron 1 of 35)	intron (NM_001105529, intron 1 of 35)	26755	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
99150	chr17	49356251	49356550	+	0	NA	intron (NR_135579, intron 1 of 7)	AluSg4|SINE|Alu	-4765	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
37963	chr11	34650151	34651280	+	0	NA	intron (NR_165390, intron 4 of 8)	intron (NR_165390, intron 4 of 8)	8343	NM_001378046	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
195876	chr6	41591651	41592530	+	0	NA	intron (NM_138457, intron 13 of 16)	intron (NM_138457, intron 13 of 16)	-6633	NR_039784	100616178		NR_039784	ENSG00000266494	MIR4641	-	microRNA 4641	ncRNA
95312	chr17	35582551	35582850	+	0	NA	Intergenic	L2a|LINE|L2	-4129	NM_000286	5193		NM_000286	ENSG00000108733	PEX12	PAF-3|PBD3A	peroxisomal biogenesis factor 12	protein-coding
208005	chr7	55537921	55538180	+	0	NA	promoter-TSS (NM_001284284)	promoter-TSS (NM_001284284)	-334	NM_001284284	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
88128	chr16	81613301	81613500	+	0	NA	intron (NM_030629, intron 2 of 20)	intron (NM_030629, intron 2 of 20)	2052	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
162357	chr3	47844621	47845080	+	0	NA	intron (NM_014966, intron 10 of 22)	intron (NM_014966, intron 10 of 22)	-4705	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
20472	chr1	198615921	198616280	+	0	NA	Intergenic	AluSq2|SINE|Alu	-22868	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
14514	chr1	144644471	144644630	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	3181	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
31219	chr10	91420951	91421050	+	0	NA	intron (NM_182765, intron 1 of 20)	intron (NM_182765, intron 1 of 20)	10656	NM_001284274	143279		NM_173497	ENSG00000165338	HECTD2	-	HECT domain E3 ubiquitin protein ligase 2	protein-coding
35211	chr11	815351	815450	+	0	NA	Intergenic	AluJb|SINE|Alu	-3514	NM_020376	57104		NM_020376	ENSG00000177666	PNPLA2	1110001C14Rik|ATGL|FP17548|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin like phospholipase domain containing 2	protein-coding
41287	chr11	65860101	65861480	+	0	NA	exon (NM_001350283, exon 1 of 16)	exon (NM_001350283, exon 1 of 16)	357	NR_146598	80198		NM_025128	ENSG00000172732	MUS81	SLX3	MUS81 structure-specific endonuclease subunit	protein-coding
163269	chr3	50302651	50302750	+	0	NA	exon (NM_033159, exon 2 of 4)	exon (NM_033159, exon 2 of 4)	874	NM_153285	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
204488	chr7	4753551	4754200	+	0	NA	intron (NM_001037165, intron 2 of 8)	intron (NM_001037165, intron 2 of 8)	-21748	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
58000	chr12	124339721	124339980	+	0	NA	intron (NM_001077261, intron 38 of 47)	(CCAC)n|Simple_repeat|Simple_repeat	-2608	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
71429	chr14	105603471	105603730	+	0	NA	Intergenic	(CCAGC)n|Simple_repeat|Simple_repeat	-17516	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
75421	chr15	65780771	65781200	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	11308	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
172759	chr4	2861871	2862230	+	0	NA	intron (NM_001354754, intron 2 of 15)	L2a|LINE|L2	17900	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
59544	chr13	27264121	27264680	+	0	NA	Intergenic	Intergenic	-6430	NM_206827	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
128148	chr2	48416201	48416600	+	0	NA	Intergenic	Intergenic	-24366	NM_001135629	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
204615	chr7	5367001	5367800	+	0	NA	intron (NM_001080495, intron 11 of 29)	intron (NM_001080495, intron 11 of 29)	56146	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
88821	chr16	87412901	87413300	+	0	NA	exon (NM_015144, exon 11 of 13)	exon (NM_015144, exon 11 of 13)	20764	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
59052	chr13	20705501	20706000	+	0	NA	intron (NM_001385224, intron 1 of 1)	intron (NM_001385224, intron 1 of 1)	2051	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
95588	chr17	37239801	37240000	+	0	NA	intron (NM_198836, intron 24 of 55).2	intron (NM_198836, intron 24 of 55).2	-4901	NR_132772	106635523		NR_132772		SNORA90	-	small nucleolar RNA, H/ACA box 90	snoRNA
53623	chr12	68153851	68154250	+	0	NA	TTS (NM_000619)	TTS (NM_000619)	5690	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
81980	chr16	11883601	11883800	+	0	NA	intron (NM_001130007, intron 10 of 14)	AluSc5|SINE|Alu	-32158	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
176047	chr4	82380621	82381080	+	0	NA	Intergenic	LTR2752|LTR|ERV1	-6854	NM_031369	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
155564	chr22	38729751	38729850	+	0	NA	intron (NM_004286, intron 11 of 11)	intron (NM_004286, intron 11 of 11)	23856	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
197985	chr6	90045971	90046130	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	151581	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
227353	chr9	89473801	89474430	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	5775	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
25316	chr10	6220101	6220300	+	0	NA	intron (NR_136554, intron 7 of 11)	AluJr|SINE|Alu	17268	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
231386	chr9	130708501	130709030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5116	NM_007313	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
161248	chr3	39236601	39236800	+	0	NA	Intergenic	Intergenic	43336	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
90476	chr17	1391951	1392730	+	0	NA	intron (NR_024058, intron 1 of 6)	AluJb|SINE|Alu	7882	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
6787	chr1	30769021	30769280	+	0	NA	Intergenic	Intergenic	-11376	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
73618	chr15	44570501	44571200	+	0	NA	intron (NM_025137, intron 33 of 39)	intron (NM_025137, intron 33 of 39)	33703	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
156311	chr22	40593801	40594000	+	0	NA	intron (NM_001282661, intron 2 of 13)	intron (NM_001282661, intron 2 of 13)	42819	NM_020831	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
74868	chr15	63558151	63558650	+	0	NA	intron (NR_046342, intron 7 of 15)	MIR|SINE|MIR	-38987	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
116391	chr19	17954671	17955030	+	0	NA	intron (NM_002248, intron 2 of 10)	AluSx1|SINE|Alu	3548	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
228998	chr9	113580551	113581150	+	0	NA	promoter-TSS (NM_001282922)	promoter-TSS (NM_001282922)	-78	NM_001282922	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
118889	chr19	38685471	38686030	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	38101	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
37072	chr11	12599551	12599850	+	0	NA	Intergenic	Intergenic	-74721	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
217033	chr8	23246171	23247880	+	0	NA	intron (NM_001363183, intron 1 of 8)	(GGCGCG)n|Simple_repeat|Simple_repeat	384	NM_001317899	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
22889	chr1	225843101	225843500	+	0	NA	intron (NM_001378427, intron 7 of 8)	L2c|LINE|L2	17946	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
120378	chr19	43636121	43636750	+	0	NA	intron (NM_145296, intron 1 of 8)	intron (NM_145296, intron 1 of 8)	3415	NM_145296	199731		NM_145296	ENSG00000105767	CADM4	IGSF4C|NECL4|Necl-4|TSLL2|synCAM4	cell adhesion molecule 4	protein-coding
134785	chr2	147663251	147664150	+	0	NA	Intergenic	MIR|SINE|MIR	-180817	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
65004	chr14	38208071	38208500	+	0	NA	intron (NM_001049, intron 1 of 2)	CpG	381	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
169273	chr3	158020071	158020250	+	0	NA	Intergenic	L1HS|LINE|L1	86003	NM_006884	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
223516	chr8	144103351	144105630	+	0	NA	promoter-TSS (NR_038270)	promoter-TSS (NR_038270)	29	NM_032272	84232		NM_032272	ENSG00000179632	MAF1	-	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding
238316	chrX	149513601	149514630	+	0	NA	Intergenic	Intergenic	-8809	NM_001166550	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
4758	chr1	23522601	23523200	+	0	NA	intron (NM_004091, intron 2 of 6)	intron (NM_004091, intron 2 of 6)	970	NR_110799	101928163		NR_110799		LOC101928163	-	uncharacterized LOC101928163	ncRNA
146310	chr20	49187601	49188950	+	0	NA	promoter-TSS (NM_001319134)	promoter-TSS (NM_001319134)	59	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
88783	chr16	87323601	87323800	+	0	NA	Intergenic	Intergenic	6191	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
36482	chr11	6257971	6258330	+	0	NA	Intergenic	Intergenic	-1688	NM_001318029	887		NM_176875	ENSG00000110148	CCKBR	CCK-2R|CCK-B|CCK2R|GASR	cholecystokinin B receptor	protein-coding
223831	chr8	144950201	144951030	+	0	NA	intron (NM_001029976, intron 1 of 3)	CpG	265	NM_006958	7564		NM_006958	ENSG00000170631	ZNF16	HZF1|KOX9	zinc finger protein 16	protein-coding
79104	chr16	193971	194530	+	0	NA	intron (NM_018032, intron 6 of 8)	AluJo|SINE|Alu	13791	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
174502	chr4	39963671	39963830	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluJb|SINE|Alu	14161	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
24599	chr1	246117151	246118050	+	0	NA	intron (NM_001375963, intron 5 of 11)	intron (NM_001375963, intron 5 of 11)	-129049	NM_001375966	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
111819	chr19	4504471	4504850	+	0	NA	exon (NM_001367868, exon 8 of 8)	exon (NM_001367868, exon 8 of 8)	13826	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
151899	chr22	18904701	18904900	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1520	NM_001368242	8214		NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
74161	chr15	55284371	55284850	+	0	NA	intron (NM_183235, intron 1 of 6)	intron (NM_183235, intron 1 of 6)	5203	NM_183235	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
166743	chr3	121995321	121995780	+	0	NA	intron (NM_001199800, intron 3 of 5)	intron (NM_001199800, intron 3 of 5)	26697	NM_001199799	286676		NM_175924	ENSG00000145103	ILDR1	DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta	immunoglobulin like domain containing receptor 1	protein-coding
89389	chr16	88807301	88807950	+	0	NA	intron (NM_030928, intron 9 of 9)	intron (NM_030928, intron 9 of 9)	3836	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
176229	chr4	85043971	85044130	+	0	NA	Intergenic	L1PA7|LINE|L1	76566	NR_152782	404201		NM_205857	ENSG00000180769	WDFY3-AS2	C4orf12|FBI4|NCRNA00247	WDFY3 antisense RNA 2	ncRNA
169540	chr3	170166751	170167050	+	0	NA	intron (NM_001308116, intron 4 of 14)	AluJo|SINE|Alu	14833	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
217339	chr8	27602051	27602380	+	0	NA	intron (NR_038335, intron 6 of 8)	MER20|DNA|hAT-Charlie	8536	NR_106902	102465508		NR_106902	ENSG00000284280	MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
139797	chr2	230305721	230305980	+	0	NA	intron (NM_001278451, intron 21 of 25)	intron (NM_001278451, intron 21 of 25)	-21321	NM_001308163	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
651	chr1	1352721	1353080	+	0	NA	3' UTR (NM_001282585, exon 10 of 10)	3' UTR (NM_001282585, exon 10 of 10)	-3482	NM_001330311	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
209799	chr7	87870921	87871180	+	0	NA	intron (NM_018843, intron 1 of 11)	LTR1E|LTR|ERV1	5310	NM_018843	55972		NM_018843	ENSG00000075303	SLC25A40	MCFP	solute carrier family 25 member 40	protein-coding
52824	chr12	57020301	57020500	+	0	NA	Intergenic	LTR49-int|LTR|ERV1	-3871	NR_135164	6866		NM_013251	ENSG00000166863	TAC3	HH10|LncZBTB39|NK3|NKB|NKNB|PRO1155|ZNEUROK1	tachykinin precursor 3	protein-coding
234111	chrX	9497401	9497600	+	0	NA	intron (NM_005647, intron 1 of 17)	intron (NM_005647, intron 1 of 17)	32442	NM_005647	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
120901	chr19	45596121	45596380	+	0	NA	intron (NM_005282, intron 1 of 1)	AluSp|SINE|Alu	5962	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
148638	chr21	5878121	5878730	+	0	NA	Intergenic	Intergenic	94965	NM_017445	54145		NM_017445	ENSG00000234289	H2BC12L	H2B/s|H2BFS|H2BS1	H2B clustered histone 12 like	protein-coding
110954	chr19	2899051	2899430	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1688	NM_173480	126295		NM_173480	ENSG00000171970	ZNF57	ZNF424	zinc finger protein 57	protein-coding
167153	chr3	128055801	128056000	+	0	NA	intron (NM_013336, intron 4 of 11)	intron (NM_013336, intron 4 of 11)	3463	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
136138	chr2	174158001	174158230	+	0	NA	intron (NM_001011708, intron 3 of 9)	intron (NM_001011708, intron 3 of 9)	90417	NM_001328688	29789		NM_013341	ENSG00000138430	OLA1	DOC45|GBP45|GTBP9|GTPBP9|PTD004	Obg like ATPase 1	protein-coding
141435	chr2	241006651	241006950	+	0	NA	intron (NM_001080437, intron 1 of 31)	L1MC4|LINE|L1	8182	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
227059	chr9	83987071	83987630	+	0	NA	intron (NM_024945, intron 1 of 2)	AluSx|SINE|Alu	6545	NM_001358291	80010		NM_024945	ENSG00000178966	RMI1	BLAP75|C9orf76|FAAP75	RecQ mediated genome instability 1	protein-coding
228966	chr9	113513521	113514180	+	0	NA	intron (NM_144488, intron 15 of 25)	intron (NM_144488, intron 15 of 25)	12343	NM_130795	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
62238	chr13	98529901	98530100	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-7875	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
32107	chr10	101212851	101212950	+	0	NA	Intergenic	AluSx|SINE|Alu	16060	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
226792	chr9	76688001	76688200	+	0	NA	intron (NM_001308049, intron 1 of 11)	intron (NM_001308049, intron 1 of 11)	4315	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
790	chr1	1539051	1539350	+	0	NA	intron (NM_001114748, intron 2 of 3)	intron (NM_001114748, intron 2 of 3)	1424	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
143529	chr20	31562671	31563550	+	0	NA	intron (NM_178580, intron 10 of 12)	intron (NM_178580, intron 10 of 12)	10153	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
172931	chr4	3512971	3513130	+	0	NA	intron (NR_110005, intron 7 of 7)	CpG	19099	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
164961	chr3	71270001	71270800	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-19358	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
137581	chr2	197269071	197270580	+	0	NA	intron (NR_046837, intron 5 of 5)	L2b|LINE|L2	32694	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
185764	chr5	132272571	132273330	+	0	NA	3' UTR (NM_003687, exon 7 of 7)	3' UTR (NM_003687, exon 7 of 7)	15254	NM_003687	8572		NM_003687	ENSG00000131435	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
2797	chr1	10917751	10919200	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	48212	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
230060	chr9	127423571	127425300	+	0	NA	promoter-TSS (NM_007135)	promoter-TSS (NM_007135)	53	NM_007135	7633		NM_007135	ENSG00000196152	ZNF79	pT7	zinc finger protein 79	protein-coding
110604	chr19	2181671	2181850	+	0	NA	intron (NM_032482, intron 2 of 27)	(CCCCAG)n|Simple_repeat|Simple_repeat	17827	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
120651	chr19	45078051	45078150	+	0	NA	intron (NM_001319055, intron 1 of 2)	AluSq|SINE|Alu	-1095	NM_001319054	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
62989	chr13	112305901	112306830	+	0	NA	Intergenic	Intergenic	-7102	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
219975	chr8	89781071	89781480	+	0	NA	intron (NM_001375360, intron 6 of 9)	intron (NM_001375360, intron 6 of 9)	23459	NM_003821	8767		NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor interacting serine/threonine kinase 2	protein-coding
12563	chr1	108701351	108701880	+	0	NA	3' UTR (NM_001349768, exon 7 of 7)	3' UTR (NM_001349768, exon 7 of 7)	9305	NM_001349759	55119		NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
3447	chr1	15915351	15915450	+	0	NA	intron (NM_015001, intron 5 of 14)	AluJb|SINE|Alu	60701	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
11854	chr1	92980551	92982050	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-19778	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
127952	chr2	46548951	46549750	+	0	NA	intron (NM_012249, intron 2 of 4)	intron (NM_012249, intron 2 of 4)	-6773	NM_001371283	90423		NM_080653	ENSG00000250565	ATP6V1E2	ATP6E1|ATP6EL2|ATP6V1EL2|VMA4	ATPase H+ transporting V1 subunit E2	protein-coding
83409	chr16	27203121	27204650	+	0	NA	promoter-TSS (NM_001145348)	promoter-TSS (NM_001145348)	-90	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
57067	chr12	121005351	121006030	+	0	NA	intron (NM_022895, intron 4 of 5)	intron (NM_022895, intron 4 of 5)	10797	NM_001286191	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
60360	chr13	40919921	40920180	+	0	NA	intron (NR_003365, intron 2 of 2)	AluSz|SINE|Alu	1700	NR_038258	100616668		NR_038258		TPTE2P5	-	TPTE2 pseudogene 5	pseudo
87427	chr16	70688971	70689130	+	0	NA	intron (NM_001351157, intron 17 of 17)	intron (NM_001351157, intron 17 of 17)	-2997	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
131216	chr2	95078551	95078650	+	0	NA	Intergenic	Intergenic	42957	NM_001321997	64969		NM_031902	ENSG00000144029	MRPS5	MRP-S5|S5mt|uS5m	mitochondrial ribosomal protein S5	protein-coding
170755	chr3	188400271	188400830	+	0	NA	intron (NM_001167671, intron 3 of 11)	intron (NM_001167671, intron 3 of 11)	168116	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
166644	chr3	119808301	119808700	+	0	NA	intron (NM_003889, intron 2 of 8)	intron (NM_003889, intron 2 of 8)	25790	NM_022002	8856		NM_003889	ENSG00000144852	NR1I2	BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR	nuclear receptor subfamily 1 group I member 2	protein-coding
222157	chr8	132759901	132761130	+	0	NA	promoter-TSS (NM_001364885)	promoter-TSS (NM_001364885)	67	NM_001382396	137835		NM_144649	ENSG00000165071	TMEM71	-	transmembrane protein 71	protein-coding
47503	chr12	4037701	4037930	+	0	NA	Intergenic	Intergenic	-164367	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
112180	chr19	5663321	5663580	+	0	NA	intron (NM_001320571, intron 13 of 18)	intron (NM_001320571, intron 13 of 18)	16788	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
56114	chr12	110744201	110744800	+	0	NA	Intergenic	L2a|LINE|L2	-1609	NM_002710	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
76784	chr15	77012421	77013400	+	0	NA	intron (NM_001321136, intron 2 of 15)	intron (NM_001321136, intron 2 of 15)	17784	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
127602	chr2	42949271	42949430	+	0	NA	Intergenic	Intergenic	90193	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
8870	chr1	43461251	43461550	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-7411	NM_001243526	81888		NM_031207	ENSG00000178922	HYI	HT036	hydroxypyruvate isomerase (putative)	protein-coding
212686	chr7	129649271	129649450	+	0	NA	intron (NM_001040110, intron 1 of 10)	intron (NM_001040110, intron 1 of 10)	19282	NM_001040110	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
110703	chr19	2297951	2298950	+	0	NA	intron (NM_001101391, intron 1 of 1)	AluJb|SINE|Alu	9704	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
55347	chr12	104049951	104050500	+	0	NA	promoter-TSS (NM_001384711)	promoter-TSS (NM_001384711)	-38	NM_001384712	83468		NM_031302	ENSG00000120820	GLT8D2	-	glycosyltransferase 8 domain containing 2	protein-coding
60395	chr13	40956371	40956550	+	0	NA	intron (NM_001370329, intron 4 of 9)	SVA_D|Retroposon|SVA	25822	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
155105	chr22	37604551	37605730	+	0	NA	Intergenic	MIRb|SINE|MIR	-3334	NM_001172687	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
153846	chr22	30161021	30161280	+	0	NA	intron (NM_152510, intron 10 of 10)	intron (NM_152510, intron 10 of 10)	-78044	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
98094	chr17	45592271	45592780	+	0	NA	Intergenic	L1M7|LINE|L1	9337	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
106407	chr18	13470571	13470930	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	10803	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
236409	chrX	71197401	71197630	+	0	NA	Intergenic	Intergenic	-17697	NM_001097642	2705		NM_000166	ENSG00000169562	GJB1	CMTX|CMTX1|CX32	gap junction protein beta 1	protein-coding
185663	chr5	131605271	131605430	+	0	NA	intron (NM_016340, intron 1 of 27)	intron (NM_016340, intron 1 of 27)	29879	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
138286	chr2	203710101	203710600	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	3711	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
164855	chr3	71056171	71056330	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	8674	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
228612	chr9	105405001	105406230	+	0	NA	intron (NM_001330731, intron 15 of 15)	L1MB5|LINE|L1	-42419	NM_001287192	83856		NM_031919	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1 like	protein-coding
202611	chr6	158730821	158731480	+	0	NA	intron (NM_001318745, intron 8 of 14)	AluY|SINE|Alu	33603	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
98968	chr17	48718651	48719400	+	0	NA	Intergenic	CpG	3493	NM_032391	84366		NM_032391	ENSG00000159182	PRAC1	C17orf92|PRAC	PRAC1 small nuclear protein	protein-coding
226547	chr9	72354401	72354600	+	0	NA	3' UTR (NM_006007, exon 6 of 6)	3' UTR (NM_006007, exon 6 of 6)	10056	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
24825	chr10	323901	324600	+	0	NA	intron (NM_014974, intron 31 of 36)	intron (NM_014974, intron 31 of 36)	144256	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
51141	chr12	50120371	50120530	+	0	NA	TTS (NM_001257134)	TTS (NM_001257134)	8214	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
55149	chr12	98725971	98726130	+	0	NA	intron (NM_013229, intron 25 of 26)	intron (NM_013229, intron 25 of 26)	80750	NM_181869	317		NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
214710	chr7	151001171	151001330	+	0	NA	exon (NM_001160110, exon 10 of 14)	exon (NM_001160110, exon 10 of 14)	7446	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
54176	chr12	77049421	77050100	+	0	NA	intron (NM_203394, intron 4 of 12)	intron (NM_203394, intron 4 of 12)	15809	NM_203394	144455		NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
221682	chr8	126487901	126488500	+	0	NA	Intergenic	L1PB1|LINE|L1	70278	NM_174911	157638		NM_174911	ENSG00000168672	LRATD2	BCMP101|FAM84B|NSE2	LRAT domain containing 2	protein-coding
138764	chr2	215982551	215982650	+	0	NA	intron (NM_001372188, intron 2 of 5)	intron (NM_001372188, intron 2 of 5)	30951	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
149117	chr21	17604371	17604530	+	0	NA	intron (NM_001130914, intron 3 of 5)	AluSq4|SINE|Alu	-7236	NR_149073	110806272		NR_149073	ENSG00000280594	BTG3-AS1	ASBEL	BTG3 antisense RNA 1	ncRNA
179726	chr5	189971	190130	+	0	NA	TTS (NM_052909)	TTS (NM_052909)	-1445	NM_001080478	389257		NM_001080478	ENSG00000185028	LRRC14B	-	leucine rich repeat containing 14B	protein-coding
206296	chr7	30137221	30137480	+	0	NA	intron (NM_152793, intron 1 of 2)	intron (NM_152793, intron 1 of 2)	2364	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
77032	chr15	78749851	78750150	+	0	NA	Intergenic	Intergenic	-2037	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
224002	chr9	2159151	2159250	+	0	NA	intron (NM_001289400, intron 1 of 7)	intron (NM_001289400, intron 1 of 7)	744	NM_001289400	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
201763	chr6	149946071	149946880	+	0	NA	exon (NM_025217, exon 3 of 5)	exon (NM_025217, exon 3 of 5)	4461	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
64717	chr14	34322921	34323400	+	0	NA	Intergenic	Intergenic	139080	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
186860	chr5	139475051	139476150	+	0	NA	TTS (NM_001301738)	TTS (NM_001301738)	4596	NM_001365197	111064649		NM_001365197	ENSG00000283288	SMIM33	-	small integral membrane protein 33	protein-coding
173016	chr4	4430551	4430950	+	0	NA	intron (NM_016930, intron 7 of 10)	intron (NM_016930, intron 7 of 10)	31222	NM_001346300	53407		NM_016930	ENSG00000168818	STX18	Ufe1	syntaxin 18	protein-coding
225258	chr9	34363851	34364350	+	0	NA	Intergenic	Intergenic	12798	NM_020702	57462		NM_020702	ENSG00000164976	MYORG	IBGC7|KIAA1161|NET37	myogenesis regulating glycosidase (putative)	protein-coding
197492	chr6	75609871	75610250	+	0	NA	intron (NM_015571, intron 1 of 23)	AluSz|SINE|Alu	8180	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
80949	chr16	3858871	3859030	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	21170	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
51848	chr12	53466571	53468580	+	0	NA	intron (NM_001128914, intron 10 of 12)	intron (NM_001128914, intron 10 of 12)	3107	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
38711	chr11	46672821	46673080	+	0	NA	non-coding (NR_144422, exon 18 of 18)	non-coding (NR_144422, exon 18 of 18)	27669	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
139542	chr2	224763971	224764830	+	0	NA	TTS (NM_014689)	TTS (NM_014689)	-179003	NM_001257197	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
56535	chr12	116816221	116816680	+	0	NA	intron (NM_001382266, intron 7 of 10)	(CCT)n|Simple_repeat|Simple_repeat	64991	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
214567	chr7	150586371	150587430	+	0	NA	Intergenic	Intergenic	19510	NM_018326	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
160969	chr3	37144771	37145130	+	0	NA	promoter-TSS (NR_168330)	promoter-TSS (NR_168330)	-768	NR_168330	100421436		NR_168330		UBE2FP1	-	UBE2F pseudogene 1	pseudo
83670	chr16	28366251	28366750	+	0	NA	Intergenic	Intergenic	-3640	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
43712	chr11	86039721	86039980	+	0	NA	intron (NM_001206947, intron 1 of 18)	AluY|SINE|Alu	29234	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
205921	chr7	25744021	25744340	+	0	NA	intron (NR_157808, intron 1 of 4)	L1PA2|LINE|L1	6852	NR_157814	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
85283	chr16	48602821	48604400	+	0	NA	intron (NM_153029, intron 1 of 6)	intron (NM_153029, intron 1 of 6)	6570	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
192447	chr6	24903251	24904150	+	0	NA	intron (NM_001286446, intron 1 of 13)	L1MA3|LINE|L1	7034	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
124659	chr2	2704701	2704900	+	0	NA	Intergenic	Intergenic	-373525	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
100117	chr17	58337501	58340850	+	0	NA	intron (NR_038418, intron 2 of 3)	intron (NR_038418, intron 2 of 3)	1973	NR_038418	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
230119	chr9	127710921	127712280	+	0	NA	intron (NM_001012502, intron 4 of 8)	intron (NM_001012502, intron 4 of 8)	4063	NM_001002913	138428		NM_001002913	ENSG00000187024	PTRH1	C9orf115|PTH1	peptidyl-tRNA hydrolase 1 homolog	protein-coding
32309	chr10	102153771	102154130	+	0	NA	intron (NM_004741, intron 1 of 12)	AluSz|SINE|Alu	1561	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
212263	chr7	122284271	122284650	+	0	NA	Intergenic	L1PA2|LINE|L1	-19198	NR_036484	154860		NR_036484	ENSG00000230316	FEZF1-AS1	-	FEZF1 antisense RNA 1	ncRNA
231501	chr9	131399551	131399650	+	0	NA	intron (NM_013318, intron 1 of 31)	AluY|SINE|Alu	5514	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
201664	chr6	149499401	149499600	+	0	NA	Intergenic	AluSx|SINE|Alu	-14486	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
84049	chr16	29577201	29577400	+	0	NA	intron (NR_135305, intron 1 of 13)	intron (NR_135305, intron 1 of 13)	17792	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
185286	chr5	126449601	126451250	+	0	NA	intron (NR_146195, intron 1 of 15)	intron (NR_146195, intron 1 of 15)	-14725	NM_001146322	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
132781	chr2	109896221	109896700	+	0	NA	Intergenic	Intergenic	-1972	NR_027145	100271835		NR_027144	ENSG00000284337	LIMS3-LOC440895	-	LIMS3-LOC440895 readthrough	ncRNA
75509	chr15	66411221	66411480	+	0	NA	intron (NM_002755, intron 1 of 10)	intron (NM_002755, intron 1 of 10)	24438	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
71501	chr14	106012671	106012830	+	0	NA	Intergenic	Intergenic	-40481	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
85076	chr16	32741001	32741630	+	0	NA	Intergenic	CpG	-65186	NR_110910	24150		NM_015369	ENSG00000183632	TP53TG3	P53TG3|TP53TG3A|TP53TG3E|TP53TG3F	TP53 target 3	protein-coding
89187	chr16	88568401	88568800	+	0	NA	Intergenic	Intergenic	-1803	NM_001294340	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
163137	chr3	50137701	50138180	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-17118	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
195849	chr6	41441171	41441330	+	0	NA	Intergenic	Intergenic	-61194	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
124909	chr2	8484601	8485350	+	0	NA	Intergenic	Intergenic	98817	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
146163	chr20	48725421	48725830	+	0	NA	intron (NM_020820, intron 5 of 39)	intron (NM_020820, intron 5 of 39)	102374	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138663	chr2	212956701	212957300	+	0	NA	Intergenic	Intergenic	-30664	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
18664	chr1	167104221	167104480	+	0	NA	intron (NM_001080426, intron 2 of 5)	intron (NM_001080426, intron 2 of 5)	10275	NM_001080426	92235		NM_001080426	ENSG00000198842	STYXL2	DUSP27	serine/threonine/tyrosine interacting like 2	protein-coding
156817	chr22	41932401	41932880	+	0	NA	Intergenic	Intergenic	-5834	NM_052945	115650		NM_052945	ENSG00000159958	TNFRSF13C	BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin	TNF receptor superfamily member 13C	protein-coding
123080	chr19	51389321	51389780	+	0	NA	intron (NM_001193623, intron 1 of 1)	intron (NM_001193623, intron 1 of 1)	1041	NM_001193623	147646		NM_001193623	ENSG00000262874	C19orf84	-	chromosome 19 open reading frame 84	protein-coding
116897	chr19	18715721	18715980	+	0	NA	intron (NM_015321, intron 1 of 13)	intron (NM_015321, intron 1 of 13)	32170	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
162965	chr3	49683451	49683750	+	0	NA	TTS (NM_020998)	TTS (NM_020998)	5163	NM_020998	4485		NM_020998	ENSG00000173531	MST1	D3F15S2|DNF15S2|HGFL|MSP|NF15S2	macrophage stimulating 1	protein-coding
153879	chr22	30274571	30274930	+	0	NA	Intergenic	L2b|LINE|L2	-7899	NM_020530	5008		NM_020530	ENSG00000099985	OSM	-	oncostatin M	protein-coding
174935	chr4	49128321	49129100	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	142068	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
137306	chr2	195661321	195661680	+	0	NA	intron (NM_020342, intron 1 of 9)	FLAM_C|SINE|Alu	4274	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
103628	chr17	78743321	78743800	+	0	NA	intron (NM_017456, intron 1 of 12)	Tigger4a|DNA|TcMar-Tigger	-6658	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
88056	chr16	81456471	81456830	+	0	NA	intron (NM_198390, intron 1 of 20)	MIR|SINE|MIR	11480	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
67081	chr14	68182471	68182750	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	359018	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
171112	chr3	195521021	195521280	+	0	NA	intron (NR_133014, intron 3 of 4)	AluSc8|SINE|Alu	22175	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
114633	chr19	12990701	12991200	+	0	NA	Intergenic	Intergenic	-4525	NM_002501	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
238537	chrX	153740021	153740750	+	0	NA	intron (NM_000033, intron 6 of 9)	intron (NM_000033, intron 6 of 9)	15529	NM_000033	215		NM_000033	ENSG00000101986	ABCD1	ABC42|ALD|ALDP|AMN	ATP binding cassette subfamily D member 1	protein-coding
223337	chr8	143830471	143830630	+	0	NA	Intergenic	HAL1|LINE|L1	-1235	NM_014281	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
83521	chr16	27459121	27459380	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-5857	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
33246	chr10	114403751	114403850	+	0	NA	intron (NM_001351068, intron 1 of 19)	CpG	702	NM_001001936	84632		NM_032550	ENSG00000169129	AFAP1L2	CTB-1144G6.4|KIAA1914|XB130	actin filament associated protein 1 like 2	protein-coding
108539	chr18	74492451	74492750	+	0	NA	Intergenic	Intergenic	-3763	NM_001370249	55748		NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	carnosine dipeptidase 2	protein-coding
232115	chr9	133733951	133734950	+	0	NA	intron (NM_007101, intron 1 of 20)	intron (NM_007101, intron 1 of 20)	3902	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
194470	chr6	33205951	33206050	+	0	NA	intron (NM_014234, intron 6 of 8).2	intron (NM_014234, intron 6 of 8).2	1345	NM_014234	7923		NM_014234	ENSG00000204228	HSD17B8	D6S2245E|FABG|FABGL|H2-KE6|HKE6|KE6|RING2|SDR30C1|dJ1033B10.9	hydroxysteroid 17-beta dehydrogenase 8	protein-coding
14135	chr1	121006001	121006500	+	0	NA	intron (NR_135813, intron 2 of 2)	AluSz|SINE|Alu	42602	NR_160532	105369199		NR_160532		LOC105369199	-	NBPF member 6 pseudogene	pseudo
189161	chr5	171394551	171394650	+	0	NA	intron (NM_002520, intron 6 of 10)	AluJb|SINE|Alu	6751	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
178182	chr4	142387621	142388300	+	0	NA	intron (NR_169599, intron 3 of 22)	MER57-int|LTR|ERV1	15173	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
98324	chr17	46259421	46261230	+	0	NA	Intergenic	CpG	-34806	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
66471	chr14	61563721	61564200	+	0	NA	non-coding (NR_110416, exon 4 of 5)	non-coding (NR_110416, exon 4 of 5)	6234	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
60025	chr13	32581201	32581480	+	0	NA	Intergenic	Intergenic	-5112	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
213057	chr7	131065651	131066300	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	41055	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
114734	chr19	13207501	13209000	+	0	NA	intron (NM_023035, intron 46 of 46)	GA-rich|Low_complexity|Low_complexity	57839	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
177559	chr4	119237771	119238380	+	0	NA	intron (NM_001371398, intron 3 of 16)	Tigger1|DNA|TcMar-Tigger	25362	NM_001371399	54532		NM_019050	ENSG00000145390	USP53	PFIC7	ubiquitin specific peptidase 53	protein-coding
7443	chr1	33000071	33000230	+	0	NA	Intergenic	AluSx3|SINE|Alu	-35341	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
190748	chr6	422701	423300	+	0	NA	Intergenic	Intergenic	31248	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
127420	chr2	42126971	42128550	+	0	NA	Intergenic	Intergenic	-41593	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
162851	chr3	49336921	49337180	+	0	NA	intron (NM_199443, intron 1 of 20)	AluSz6|SINE|Alu	3003	NM_003363	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
43224	chr11	75441201	75441400	+	0	NA	exon (NM_001351168, exon 15 of 18)	exon (NM_001351168, exon 15 of 18)	-10671	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
183432	chr5	78509671	78510480	+	0	NA	exon (NM_005779, exon 4 of 5)	exon (NM_005779, exon 4 of 5)	138697	NM_005779	10184		NM_005779	ENSG00000145685	LHFPL2	-	LHFPL tetraspan subfamily member 2	protein-coding
226825	chr9	77725821	77726180	+	0	NA	intron (NM_002072, intron 6 of 6)	intron (NM_002072, intron 6 of 6)	-77678	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
159863	chr3	16774471	16774830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-110305	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
113254	chr19	8503921	8504450	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1545	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
123201	chr19	52674001	52674200	+	0	NA	intron (NM_001348015, intron 1 of 6)	intron (NM_001348015, intron 1 of 6)	16481	NM_001348015	55769		NM_018300	ENSG00000167766	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
8520	chr1	40987971	40988130	+	0	NA	promoter-TSS (NM_001301237)	promoter-TSS (NM_001301237)	-469	NM_001301237	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
86707	chr16	67544471	67544830	+	0	NA	intron (NM_024519, intron 15 of 21)	intron (NM_024519, intron 15 of 21)	7188	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
206268	chr7	29408421	29409050	+	0	NA	intron (NM_004067, intron 6 of 12)	intron (NM_004067, intron 6 of 12)	-70977	NM_001293077	1124		NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
23341	chr1	228130121	228130380	+	0	NA	Intergenic	AluJr|SINE|Alu	-9834	NM_001242839	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
20734	chr1	200903851	200904550	+	0	NA	intron (NM_018265, intron 5 of 9)	AluSz|SINE|Alu	9300	NM_001367290	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
19558	chr1	179038551	179039150	+	0	NA	intron (NM_001324311, intron 1 of 7)	intron (NM_001324311, intron 1 of 7)	12726	NM_001324311	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
10647	chr1	70242121	70242480	+	0	NA	intron (NM_001350612, intron 9 of 13)	intron (NM_001350612, intron 9 of 13)	20920	NM_001350613	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
107015	chr18	32083371	32083730	+	0	NA	Intergenic	Intergenic	-8324	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
116436	chr19	18020921	18021900	+	0	NA	Intergenic	Intergenic	13240	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
70894	chr14	103908421	103909080	+	0	NA	Intergenic	Intergenic	12779	NM_001127393	9556		NM_004894	ENSG00000156411	ATP5MJ	6.8PL|ATP5MPL|C14orf2|MLQ|MP68|PLPM	ATP synthase membrane subunit j	protein-coding
16576	chr1	155008071	155008800	+	0	NA	intron (NM_001377455, intron 2 of 3)	intron (NM_001377455, intron 2 of 3)	5633	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
239088	chrY	10463571	10463730	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	552852	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
64925	chr14	35687371	35687700	+	0	NA	intron (NM_014990, intron 17 of 40)	intron (NM_014990, intron 17 of 40)	75396	NR_135620	107399303		NR_135620		SNORA101B	ZL4	small nucleolar RNA, H/ACA box 101B	snoRNA
96855	chr17	42016601	42018430	+	0	NA	promoter-TSS (NM_001001349)	promoter-TSS (NM_001001349)	-61	NM_001001349	28511		NM_017595	ENSG00000168256	NKIRAS2	KBRAS2|kappaB-Ras2	NFKB inhibitor interacting Ras like 2	protein-coding
33601	chr10	119534521	119534980	+	0	NA	intron (NM_001005339, intron 1 of 4)	AluSc|SINE|Alu	1783	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
155069	chr22	37541471	37541630	+	0	NA	Intergenic	AluY|SINE|Alu	-18930	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
39814	chr11	62022401	62022600	+	0	NA	Intergenic	MER21C|LTR|ERVL	-54866	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
185239	chr5	123421171	123421550	+	0	NA	intron (NM_001166226, intron 1 of 19)	intron (NM_001166226, intron 1 of 19)	2043	NM_001375409	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
9348	chr1	46717171	46717950	+	0	NA	intron (NM_014774, intron 1 of 10)	intron (NM_014774, intron 1 of 10)	1554	NM_014774	9813		NM_014774	ENSG00000159658	EFCAB14	KIAA0494	EF-hand calcium binding domain 14	protein-coding
207311	chr7	44029071	44030280	+	0	NA	intron (NR_024116, intron 7 of 8)	intron (NR_024116, intron 7 of 8)	-9374	NR_072982	255031		NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
143942	chr20	32770921	32771400	+	0	NA	intron (NM_175849, intron 1 of 19)	intron (NM_175849, intron 1 of 19)	-8692	NM_175850	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
114137	chr19	11217541	11217650	+	0	NA	intron (NM_020812, intron 28 of 47)	AluSz6|SINE|Alu	13967	NR_134909	105372273		NR_134909	ENSG00000267082	DOCK6-AS1	-	DOCK6 antisense RNA 1	ncRNA
50653	chr12	48810871	48811230	+	0	NA	Intergenic	Intergenic	-3430	NM_001206917	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
233441	chr9	137620951	137622130	+	0	NA	intron (NM_001354612, intron 1 of 8)	AluSz|SINE|Alu	2535	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
1529	chr1	3078551	3078850	+	0	NA	intron (NM_199454, intron 1 of 16)	intron (NM_199454, intron 1 of 16)	9497	NM_199454	63976		NM_022114	ENSG00000142611	PRDM16	CMD1LL|KMT8F|LVNC8|MEL1|PFM13	PR/SET domain 16	protein-coding
162426	chr3	48422951	48423050	+	0	NA	intron (NM_002673, intron 3 of 37)	intron (NM_002673, intron 3 of 37)	6463	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
167878	chr3	135038851	135038950	+	0	NA	intron (NM_004441, intron 3 of 15)	LTR12C|LTR|ERV1	243640	NM_004441	2047		NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
21802	chr1	207077521	207078280	+	0	NA	TTS (NM_006212)	TTS (NM_006212)	-10960	NM_001017365	725		NM_000716	ENSG00000123843	C4BPB	C4BP	complement component 4 binding protein beta	protein-coding
34410	chr10	132398601	132399050	+	0	NA	intron (NM_138499, intron 1 of 2)	intron (NM_138499, intron 1 of 2)	1625	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
214705	chr7	150996471	150996630	+	0	NA	exon (NM_001160110, exon 3 of 14)	exon (NM_001160110, exon 3 of 14)	2746	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
98789	chr17	48153621	48154050	+	0	NA	intron (NM_001075099, intron 11 of 12)	intron (NM_001075099, intron 11 of 12)	2676	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
16797	chr1	155550421	155550880	+	0	NA	intron (NM_018489, intron 1 of 27)	L2a|LINE|L2	-11392	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
40774	chr11	64869701	64871000	+	0	NA	intron (NM_001282444, intron 4 of 6)	MIRb|SINE|MIR	8259	NR_162101	113218486		NR_162101		MIR10392	-	microRNA 10392	ncRNA
108807	chr18	78601521	78601780	+	0	NA	Intergenic	Intergenic	-378625	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
238809	chrX	154404371	154405030	+	0	NA	intron (NM_001009932, intron 6 of 9)	intron (NM_001009932, intron 6 of 9)	4419	NR_000011	26778		NR_000011	ENSG00000207165	SNORA70	DXS648E|RNU70|U70	small nucleolar RNA, H/ACA box 70	snoRNA
204422	chr7	3110071	3110430	+	0	NA	Intergenic	L1ME2|LINE|L1	48323	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
76099	chr15	72495871	72496950	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	22080	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
27910	chr10	41895501	41895700	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	472445	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
111306	chr19	3607701	3607900	+	0	NA	promoter-TSS (NM_001060)	promoter-TSS (NM_001060)	553	NR_038865	404665		NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	ncRNA
40615	chr11	64685271	64685630	+	0	NA	intron (NM_015080, intron 6 of 22)	intron (NM_015080, intron 6 of 22)	37747	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
68359	chr14	77716051	77716430	+	0	NA	intron (NM_001267863, intron 3 of 3)	AluYe5|SINE|Alu	8137	NM_031210	81892		NM_031210	ENSG00000119705	SLIRP	C14orf156|DC50|PD04872	SRA stem-loop interacting RNA binding protein	protein-coding
74220	chr15	56245901	56246900	+	0	NA	intron (NM_001385050, intron 1 of 7)	intron (NM_001385050, intron 1 of 7)	-1318	NM_001370561	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
58216	chr12	127280671	127280900	+	0	NA	intron (NR_146537, intron 2 of 3)	CpG	3498	NR_146537	105370065		NR_146537		LINC02376	-	long intergenic non-protein coding RNA 2376	ncRNA
84438	chr16	30397571	30398580	+	0	NA	exon (NM_152652, exon 2 of 2)	exon (NM_152652, exon 2 of 2)	2655	NM_001324494	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
202860	chr6	159792321	159792780	+	0	NA	intron (NR_134860, intron 3 of 4)	intron (NR_134860, intron 3 of 4)	2033	NR_134861	29074		NM_014161	ENSG00000112110	MRPL18	HSPC071|L18mt|MRP-L18|uL18m	mitochondrial ribosomal protein L18	protein-coding
56985	chr12	120555471	120555630	+	0	NA	intron (NM_001330474, intron 4 of 16)	AluSp|SINE|Alu	21194	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
9930	chr1	54479301	54479750	+	0	NA	Intergenic	MIRc|SINE|MIR	-68703	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
126276	chr2	27193321	27194030	+	0	NA	Intergenic	(AAGG)n|Simple_repeat|Simple_repeat	18593	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
152974	chr22	23116351	23116650	+	0	NA	intron (NM_002073, intron 2 of 2)	intron (NM_002073, intron 2 of 2)	25490	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
49650	chr12	28543001	28543600	+	0	NA	intron (NM_001352086, intron 15 of 15)	MLT1B|LTR|ERVL-MaLR	-352562	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
75208	chr15	64835571	64836350	+	0	NA	Intergenic	CpG	-5923	NM_001195059	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
182296	chr5	58451921	58452180	+	0	NA	Intergenic	L2b|LINE|L2	8036	NM_006622	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
135791	chr2	169814171	169814530	+	0	NA	intron (NM_001293186, intron 6 of 7)	AluSx3|SINE|Alu	-1929	NR_145754	109617017		NR_145754		SNORD3K	-	small nucleolar RNA, C/D box 3K	snoRNA
191934	chr6	15661921	15663750	+	0	NA	exon (NM_001271669, exon 1 of 8)	exon (NM_001271669, exon 1 of 8)	193	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
135460	chr2	161271801	161272200	+	0	NA	Intergenic	AluSx|SINE|Alu	-17357	NR_110593	101929512		NR_110593		PSMD14-DT	-	PSMD14 divergent transcript	ncRNA
177440	chr4	112638671	112638830	+	0	NA	intron (NM_001370978, intron 2 of 13)	Tigger3c|DNA|TcMar-Tigger	1248	NM_001370978	51574		NM_015454	ENSG00000174720	LARP7	ALAZS|HDCMA18P|PIP7S|hLARP7	La ribonucleoprotein 7, transcriptional regulator	protein-coding
200730	chr6	137709601	137710000	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	29237	NR_121618	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
48602	chr12	10323751	10324050	+	0	NA	non-coding (NR_147040, exon 5 of 5)	non-coding (NR_147040, exon 5 of 5)	14392	NR_159946	113523642		NR_159946	ENSG00000256288	LINC02617	-	long intergenic non-protein coding RNA 2617	ncRNA
91806	chr17	7041001	7041300	+	0	NA	TTS (NM_153357)	TTS (NM_153357)	2942	NM_001370553	162515		NM_153357	ENSG00000174326	SLC16A11	MCT 11|MCT11	solute carrier family 16 member 11	protein-coding
39037	chr11	47774751	47775480	+	0	NA	Intergenic	AluSg|SINE|Alu	-7774	NM_001318339	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
186611	chr5	138526551	138526850	+	0	NA	intron (NM_004730, intron 2 of 10)	AluSg|SINE|Alu	15011	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
199349	chr6	115121651	115121750	+	0	NA	Intergenic	L1P1|LINE|L1	522135	NR_134602	105377962		NR_134602	ENSG00000228777	LINC02534	-	long intergenic non-protein coding RNA 2534	ncRNA
218206	chr8	42014621	42014880	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-37000	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
210552	chr7	100337251	100337350	+	0	NA	promoter-TSS (NR_003613)	promoter-TSS (NR_003613)	-993	NR_003613	5379		NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
76127	chr15	72527451	72527950	+	0	NA	intron (NM_005744, intron 2 of 13)	intron (NM_005744, intron 2 of 13)	53370	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
93403	chr17	18361521	18362080	+	0	NA	intron (NM_004169, intron 1 of 11).2	AluY|SINE|Alu	1750	NM_004169	6470		NM_004169	ENSG00000176974	SHMT1	CSHMT|SHMT	serine hydroxymethyltransferase 1	protein-coding
22649	chr1	223746671	223747050	+	0	NA	intron (NM_001748, intron 4 of 20)	intron (NM_001748, intron 4 of 20)	34321	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
110261	chr19	1800551	1800850	+	0	NA	intron (NR_047593, intron 12 of 28)	AluJr|SINE|Alu	11576	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
107281	chr18	44680101	44681380	+	0	NA	promoter-TSS (NM_015559)	promoter-TSS (NM_015559)	-148	NM_015559	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
116489	chr19	18117171	18118700	+	0	NA	intron (NM_015016, intron 2 of 26)	CpG	-19119	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
129746	chr2	70978611	70979930	+	0	NA	exon (NM_001369683, exon 2 of 6)	exon (NM_001369683, exon 2 of 6)	640	NM_024933	79998		NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
132606	chr2	108583921	108584250	+	0	NA	intron (NM_001371497, intron 1 of 9)	intron (NM_001371497, intron 1 of 9)	3906	NM_001371497	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
230783	chr9	128927351	128928250	+	0	NA	intron (NM_174933, intron 4 of 11)	MIRb|SINE|MIR	5517	NM_001100877	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
182268	chr5	57203171	57203630	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluSz6|SINE|Alu	-10674	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
232100	chr9	133683051	133684730	+	0	NA	intron (NM_001134707, intron 17 of 20)	intron (NM_001134707, intron 17 of 20)	-26482	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
152038	chr22	19489271	19489500	+	0	NA	intron (NR_161281, intron 5 of 16)	L1MD1|LINE|L1	9465	NR_161281	8318		NM_003504	ENSG00000093009	CDC45	CDC45L|CDC45L2|MGORS7|PORC-PI-1	cell division cycle 45	protein-coding
28247	chr10	45582121	45582380	+	0	NA	intron (NM_145021, intron 1 of 6)	L3|LINE|CR1	12656	NM_145021	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
72034	chr15	28402971	28403130	+	0	NA	intron (NR_031672, intron 2 of 2)	CpG	-23441	NR_039733	100616228		NR_039733	ENSG00000266039	MIR4509-2	-	microRNA 4509-2	ncRNA
199043	chr6	111472921	111473180	+	0	NA	intron (NM_001286432, intron 2 of 33)	intron (NM_001286432, intron 2 of 33)	10168	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
53741	chr12	68641021	68641930	+	0	NA	intron (NM_001251917, intron 1 of 5)	Tigger19b|DNA|TcMar-Tigger	-14100	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
163734	chr3	52315971	52316780	+	0	NA	promoter-TSS (NM_015512)	promoter-TSS (NM_015512)	56	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
149613	chr21	33377421	33377680	+	0	NA	Intergenic	Intergenic	-25346	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
50334	chr12	47079401	47080400	+	0	NA	promoter-TSS (NM_001143668)	promoter-TSS (NM_001143668)	51	NM_001143668	347902		NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
164254	chr3	57229321	57229800	+	0	NA	intron (NM_012096, intron 1 of 21)	FAM|SINE|Alu	1831	NM_012096	26060		NM_012096	ENSG00000157500	APPL1	APPL|DIP13alpha|MODY14	adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1	protein-coding
132956	chr2	111465871	111466300	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	29076	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
100714	chr17	63851371	63853030	+	0	NA	Intergenic	AluY|SINE|Alu	-4816	NR_002947	146771		NR_002947	ENSG00000293480	TCAM1P	TCAM1	testicular cell adhesion molecule 1, pseudogene	pseudo
191078	chr6	3603501	3603700	+	0	NA	Intergenic	L1M2|LINE|L1	-146550	NM_001382317	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
147484	chr20	59149501	59150930	+	0	NA	intron (NM_001384354, intron 2 of 7)	intron (NM_001384354, intron 2 of 7)	-13606	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
61902	chr13	77326101	77327550	+	0	NA	5' UTR (NM_015057, exon 1 of 83)	5' UTR (NM_015057, exon 1 of 83)	269	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
6615	chr1	28883151	28883450	+	0	NA	Intergenic	Intergenic	-3791	NM_203342	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
19259	chr1	172696701	172696900	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	37697	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
230684	chr9	128725801	128726000	+	0	NA	intron (NR_046240, intron 1 of 1)	intron (NR_046240, intron 1 of 1)	1438	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
99383	chr17	49970771	49971080	+	0	NA	intron (NM_138281, intron 1 of 2)	intron (NM_138281, intron 1 of 2)	1735	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
227554	chr9	92094701	92094900	+	0	NA	intron (NM_001368272, intron 3 of 15)	intron (NM_001368272, intron 3 of 15)	20613	NM_006415	10558		NM_006415	ENSG00000090054	SPTLC1	ALS27|HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI	serine palmitoyltransferase long chain base subunit 1	protein-coding
67810	chr14	73777251	73777780	+	0	NA	intron (NM_001043318, intron 1 of 11)	L2b|LINE|L2	9693	NM_001043318	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
107000	chr18	32046371	32046930	+	0	NA	intron (NM_017831, intron 4 of 5)	intron (NM_017831, intron 4 of 5)	27825	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
64346	chr14	24055051	24055750	+	0	NA	intron (NM_138360, intron 8 of 39).2	intron (NM_138360, intron 8 of 39).2	3391	NM_138360	90668		NM_138360	ENSG00000186648	CARMIL3	C14orf121|LRRC16B|crml-1	capping protein regulator and myosin 1 linker 3	protein-coding
217501	chr8	29060371	29062300	+	0	NA	Intergenic	Intergenic	170021	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
69753	chr14	99009701	99010100	+	0	NA	Intergenic	Intergenic	262297	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
65379	chr14	50714501	50714800	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-46344	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
61371	chr13	51434871	51435300	+	0	NA	intron (NM_001039937, intron 4 of 18)	intron (NM_001039937, intron 4 of 18)	17951	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
45085	chr11	117079301	117079500	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	19028	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
108586	chr18	75206971	75207330	+	0	NA	intron (NM_175907, intron 1 of 1)	intron (NM_175907, intron 1 of 1)	-1637	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
155363	chr22	38288401	38288830	+	0	NA	Intergenic	MIRc|SINE|MIR	-15605	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
53978	chr12	74689071	74689260	+	0	NA	Intergenic	Intergenic	151330	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
72817	chr15	40107121	40107380	+	0	NA	promoter-TSS (NM_033503)	promoter-TSS (NM_033503)	-622	NM_033503	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
42516	chr11	70399471	70399830	+	0	NA	intron (NM_005231, intron 1 of 17)	intron (NM_005231, intron 1 of 17)	1121	NM_005231	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
143024	chr20	21096121	21096630	+	0	NA	intron (NR_147212, intron 1 of 2)	MLT1J1|LTR|ERVL-MaLR	9983	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
101831	chr17	73646401	73646900	+	0	NA	Intergenic	Intergenic	-2205	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
100613	chr17	63538121	63539380	+	0	NA	intron (NM_173092, intron 9 of 14)	intron (NM_173092, intron 9 of 14)	-11727	NM_005828	10238		NM_005828	ENSG00000136485	DCAF7	AN11|HAN11|SWAN-1|WDR68	DDB1 and CUL4 associated factor 7	protein-coding
41112	chr11	65550871	65551400	+	0	NA	exon (NM_001164266, exon 11 of 27)	exon (NM_001164266, exon 11 of 27)	7093	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
101516	chr17	67824171	67825900	+	0	NA	promoter-TSS (NM_004459)	promoter-TSS (NM_004459)	-468	NM_182641	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
149714	chr21	34077901	34078350	+	0	NA	intron (NM_032476, intron 1 of 2)	intron (NM_032476, intron 1 of 2)	4547	NM_006933	6526		NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
163633	chr3	52059871	52060100	+	0	NA	Intergenic	Intergenic	-3414	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
208169	chr7	64669721	64670300	+	0	NA	intron (NM_016220, intron 2 of 6)	intron (NM_016220, intron 2 of 6)	3877	NM_001013746	51427		NM_016220	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
119464	chr19	40428901	40429900	+	0	NA	Intergenic	L1MC5a|LINE|L1	-3408	NM_013376	29950		NM_013376	ENSG00000197019	SERTAD1	SEI1|TRIP-Br1|TRIPBR1	SERTA domain containing 1	protein-coding
146667	chr20	50499251	50499850	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-10771	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
20264	chr1	194044771	194044930	+	0	NA	Intergenic	Intergenic	740105	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
138167	chr2	202633951	202635300	+	0	NA	promoter-TSS (NM_173511)	promoter-TSS (NM_173511)	-344	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
159052	chr3	11624101	11625280	+	0	NA	intron (NM_014667, intron 2 of 5)	intron (NM_014667, intron 2 of 5)	19225	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
13499	chr1	114727371	114727730	+	0	NA	intron (NM_001242891, intron 13 of 20)	intron (NM_001242891, intron 13 of 20)	-10779	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
199376	chr6	116268401	116269400	+	0	NA	intron (NM_001322937, intron 2 of 6)	intron (NM_001322937, intron 2 of 6)	11030	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
228425	chr9	99725801	99726180	+	0	NA	intron (NR_109802, intron 2 of 6)	MIRc|SINE|MIR	93899	NR_109802	101928438		NR_109802	ENSG00000237461	LOC101928438	-	uncharacterized LOC101928438	ncRNA
148590	chr21	5103151	5103250	+	0	NA	TTS (NR_146631)	TTS (NR_146631)	1140	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
134898	chr2	149167001	149167950	+	0	NA	intron (NM_001317002, intron 4 of 7)	intron (NM_001317002, intron 4 of 7)	49301	NM_001317002	130576		NM_177964	ENSG00000150556	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
221628	chr8	125731371	125731930	+	0	NA	Intergenic	Intergenic	219547	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
79077	chr16	169871	170030	+	0	NA	Intergenic	Intergenic	-2926	NM_000517	3040		NM_000517	ENSG00000188536	HBA2	ECYT7|HBA-T2|HBH	hemoglobin subunit alpha 2	protein-coding
222754	chr8	141417601	141418350	+	0	NA	intron (NM_032611, intron 1 of 5).2	CpG	-3413	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
75186	chr15	64773101	64773300	+	0	NA	intron (NM_194272, intron 1 of 7)	intron (NM_194272, intron 1 of 7)	1543	NR_138363	348093		NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
212701	chr7	129774751	129775050	+	0	NA	promoter-TSS (NR_029512)	promoter-TSS (NR_029512)	114	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
215668	chr8	672601	672800	+	0	NA	intron (NM_207332, intron 4 of 5)	intron (NM_207332, intron 4 of 5)	58524	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
69273	chr14	93064471	93064630	+	0	NA	intron (NM_014216, intron 3 of 10).2	AmnSINE2|SINE|tRNA-Deu	-2902	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
55716	chr12	108253751	108253850	+	0	NA	Intergenic	Intergenic	66862	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
236596	chrX	73852521	73852780	+	0	NA	non-coding (NR_001564, exon 1 of 6)	non-coding (NR_001564, exon 1 of 6)	103	NR_001564	7503		NR_001564	ENSG00000229807	XIST	DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66	X inactive specific transcript	ncRNA
104106	chr17	80277771	80277930	+	0	NA	intron (NM_020954, intron 3 of 16)	intron (NM_020954, intron 3 of 16)	16998	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
91281	chr17	4137521	4138500	+	0	NA	intron (NM_015113, intron 1 of 54)	intron (NM_015113, intron 1 of 54)	5020	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
201080	chr6	142787621	142787880	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	-149861	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
95289	chr17	35526301	35526600	+	0	NA	intron (NM_001363830, intron 1 of 4)	L1PA7|LINE|L1	11411	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
111581	chr19	4077151	4077250	+	0	NA	Intergenic	Intergenic	-10301	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
204600	chr7	5307551	5307930	+	0	NA	TTS (NM_001300847)	TTS (NM_001300847)	24797	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
109242	chr19	508921	509180	+	0	NA	intron (NM_033513, intron 1 of 1)	intron (NM_033513, intron 1 of 1)	1553	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
89724	chr16	89422601	89423730	+	0	NA	intron (NR_045839, intron 1 of 9)	intron (NR_045839, intron 1 of 9)	-7753	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
167657	chr3	129794801	129795000	+	0	NA	promoter-TSS (NM_001349273)	promoter-TSS (NM_001349273)	-288	NM_001349273	23023		NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
15353	chr1	150009621	150010000	+	0	NA	intron (NM_020205, intron 1 of 11)	intron (NM_020205, intron 1 of 11)	916	NM_020205	56957		NM_020205	ENSG00000264522	OTUD7B	CEZANNE|ZA20D1	OTU deubiquitinase 7B	protein-coding
31382	chr10	94362451	94363680	+	0	NA	promoter-TSS (NM_022451)	promoter-TSS (NM_022451)	-126	NM_022451	64318		NM_022451	ENSG00000173145	NOC3L	AD24|C10orf117|FAD24	NOC3 like DNA replication regulator	protein-coding
67458	chr14	70820421	70820680	+	0	NA	Intergenic	Intergenic	-11037	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
66594	chr14	63540201	63540400	+	0	NA	intron (NR_104104, intron 1 of 12)	AluSz|SINE|Alu	-2484	NR_158218	112268140		NR_158218		LOC112268140	-	loricrin-like	ncRNA
19779	chr1	182300121	182300380	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	13811	NR_104175	400799		NR_104175		LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
191162	chr6	4805951	4806250	+	0	NA	intron (NM_001368127, intron 1 of 5)	intron (NM_001368127, intron 1 of 5)	29696	NM_001368126	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
169459	chr3	168061451	168061750	+	0	NA	intron (NM_001308155, intron 1 of 14)	L1ME3A|LINE|L1	34324	NM_001308155	27333		NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
69086	chr14	92104971	92105130	+	0	NA	intron (NR_028457, intron 1 of 11)	intron (NR_028457, intron 1 of 11)	1532	NM_001127696	4287		NM_004993	ENSG00000066427	ATXN3	AT3|ATX3|JOS|MJD|MJD1|SCA3	ataxin 3	protein-coding
65177	chr14	49603371	49603730	+	0	NA	intron (NM_203467, intron 2 of 2)	AluSx|SINE|Alu	4610	NM_152329	122769		NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
31518	chr10	96758421	96758880	+	0	NA	Intergenic	Intergenic	8384	NR_026712	728658		NR_026712	ENSG00000236552	RPL13AP5	RPL13A_8_1086|bA196N24.2	ribosomal protein L13a pseudogene 5	pseudo
1879	chr1	6428751	6429130	+	0	NA	TTS (NR_036218)	TTS (NR_036218)	956	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
118836	chr19	38614971	38615400	+	0	NA	intron (NM_007181, intron 4 of 31)	L2a|LINE|L2	2768	NM_001042600	11184		NM_007181	ENSG00000104814	MAP4K1	HPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding
108978	chr18	79677401	79677780	+	0	NA	intron (NR_136643, intron 1 of 4)	MER57B2|LTR|ERV1	2155	NR_136643	284241		NM_182570	ENSG00000178412	CTDP1-DT	-	CTDP1 divergent transcript	ncRNA
126249	chr2	27082751	27083500	+	0	NA	exon (NM_007046, exon 4 of 8)	exon (NM_007046, exon 4 of 8)	-3647	NM_006488	3795		NM_000221	ENSG00000138030	KHK	FRUCTU	ketohexokinase	protein-coding
231339	chr9	130237801	130238400	+	0	NA	TTS (NM_001128826)	TTS (NM_001128826)	-3287	NR_162140	113219459		NR_162140		MIR12126	-	microRNA 12126	ncRNA
10887	chr1	78622551	78623050	+	0	NA	intron (NM_001375650, intron 2 of 8)	MLT1E1A|LTR|ERVL-MaLR	2352	NM_006820	10964		NM_006820	ENSG00000137959	IFI44L	C1orf29|GS3686|TLDC5B	interferon induced protein 44 like	protein-coding
101337	chr17	66805751	66806050	+	0	NA	3' UTR (NM_002737, exon 17 of 17)	3' UTR (NM_002737, exon 17 of 17)	18828	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
57993	chr12	124323101	124324530	+	0	NA	TTS (NM_006312)	TTS (NM_006312)	13427	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
167907	chr3	136160421	136161650	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSc8|SINE|Alu	33433	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
208010	chr7	55557701	55558450	+	0	NA	intron (NM_001321243, intron 1 of 5)	L1MA10|LINE|L1	-4188	NM_001321248	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
158591	chr3	4750671	4751230	+	0	NA	non-coding (NR_004428, exon 1 of 2)	non-coding (NR_004428, exon 1 of 2)	640	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
204950	chr7	6347151	6347600	+	0	NA	intron (NM_001037163, intron 1 of 1)	AluSx1|SINE|Alu	1592	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
200398	chr6	134379171	134379630	+	0	NA	Intergenic	MER51A|LTR|ERV1	-58316	NR_038216	154092		NR_038216	ENSG00000236700	LINC01010	-	long intergenic non-protein coding RNA 1010	ncRNA
118511	chr19	35966771	35967180	+	0	NA	Intergenic	Intergenic	19860	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
57822	chr12	123226621	123227030	+	0	NA	intron (NR_103517, intron 3 of 23)	AluJr|SINE|Alu	6316	NM_022782	10198		NM_022782	ENSG00000051825	MPHOSPH9	MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding
94043	chr17	27319751	27320480	+	0	NA	Intergenic	Intergenic	26001	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
95938	chr17	38958271	38958630	+	0	NA	intron (NM_001008777, intron 3 of 10)	intron (NM_001008777, intron 3 of 10)	8953	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
78342	chr15	91047151	91047850	+	0	NA	Intergenic	L1M5|LINE|L1	24878	NR_110104	101926911		NR_110104	ENSG00000214432	VPS33B-DT	-	VPS33B divergent transcript	ncRNA
193098	chr6	28897001	28897480	+	0	NA	TTS (NR_104117)	TTS (NR_104117)	710	NR_104117	414760		NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14	ncRNA
81530	chr16	9097201	9098030	+	0	NA	intron (NM_014117, intron 2 of 3)	intron (NM_014117, intron 2 of 3)	5971	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
201201	chr6	143450201	143451780	+	0	NA	promoter-TSS (NM_182503)	promoter-TSS (NM_182503)	185	NM_003630	8504		NM_003630	ENSG00000034693	PEX3	PBD10A|PBD10B|TRG18	peroxisomal biogenesis factor 3	protein-coding
24298	chr1	236546571	236546730	+	0	NA	intron (NM_201544, intron 9 of 9)	intron (NM_201544, intron 9 of 9)	-22142	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
210635	chr7	100459421	100459680	+	0	NA	intron (NM_001004323, intron 2 of 2)	AluSq|SINE|Alu	4710	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
146305	chr20	49181551	49181850	+	0	NA	intron (NM_001322929, intron 1 of 14)	AluSx|SINE|Alu	6634	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
222653	chr8	141171051	141171580	+	0	NA	intron (NM_014957, intron 13 of 22)	intron (NM_014957, intron 13 of 22)	42726	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
181945	chr5	55020171	55020530	+	0	NA	TTS (NR_104662)	TTS (NR_104662)	3819	NR_104662	102467081		NR_104662		LOC102467081	-	uncharacterized LOC102467081	ncRNA
29660	chr10	71940171	71940330	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-24145	NM_004273	9469		NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate sulfotransferase 3	protein-coding
139194	chr2	219246721	219247100	+	0	NA	intron (NM_001330214, intron 2 of 5)	intron (NM_001330214, intron 2 of 5)	1014	NM_001330214	8576		NM_003691	ENSG00000115661	STK16	KRCT|MPSK|PKL12|PSK|TSF1|hPSK	serine/threonine kinase 16	protein-coding
140242	chr2	231906021	231906580	+	0	NA	Intergenic	Intergenic	-14002	NR_031717	100302126		NR_031717	ENSG00000222246	MIR1471	MIRN1471|hsa-mir-1471	microRNA 1471	ncRNA
118497	chr19	35944401	35945030	+	0	NA	exon (NM_024509, exon 3 of 3)	exon (NM_024509, exon 3 of 3)	-2400	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
158417	chr22	50539051	50540150	+	0	NA	Intergenic	Intergenic	-6299	NM_138433	113730		NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
4793	chr1	23568001	23568950	+	0	NA	Intergenic	CpG	-8974	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
114269	chr19	11576051	11576550	+	0	NA	exon (NM_001111036, exon 5 of 6)	exon (NM_001111036, exon 5 of 6)	1345	NM_001611	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
117216	chr19	19408971	19409130	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	3375	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
157296	chr22	44332801	44333000	+	0	NA	Intergenic	Intergenic	-19949	NM_001099294	85352		NM_001099294	ENSG00000138944	SHISAL1	KIAA1644	shisa like 1	protein-coding
78708	chr15	98178001	98178300	+	0	NA	Intergenic	Intergenic	-89397	NR_120325	101927332		NR_120325	ENSG00000259611	LINC01582	-	long intergenic non-protein coding RNA 1582	ncRNA
97175	chr17	42669571	42671300	+	0	NA	intron (NM_024927, intron 10 of 12)	CpG-11168	5576	NR_073574	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
151487	chr21	46295451	46295830	+	0	NA	intron (NM_001314023, intron 3 of 4)	intron (NM_001314023, intron 3 of 4)	9298	NM_001314022	54059		NM_058181	ENSG00000182362	YBEY	C21orf57	ybeY metalloendoribonuclease	protein-coding
194556	chr6	33372201	33372400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-19523	NM_002263	3833		NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
23414	chr1	228286501	228286900	+	0	NA	intron (NM_052843, intron 34 of 80)	intron (NM_052843, intron 34 of 80)	-73036	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
222903	chr8	142802921	142804400	+	0	NA	Intergenic	Intergenic	-17121	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
29695	chr10	72057001	72057650	+	0	NA	Intergenic	Intergenic	31226	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
90943	chr17	2625921	2626180	+	0	NA	intron (NM_000430, intron 1 of 10)	AluSz|SINE|Alu	32396	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
187974	chr5	149474321	149474580	+	0	NA	Intergenic	Intergenic	43804	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
76329	chr15	74404251	74404550	+	0	NA	Intergenic	Intergenic	7032	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
185167	chr5	119345471	119345930	+	0	NA	intron (NM_001286814, intron 1 of 1)	L1MB3|LINE|L1	-9073	NM_001286813	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
7812	chr1	36284601	36284800	+	0	NA	intron (NM_001321471, intron 4 of 12)	intron (NM_001321471, intron 4 of 12)	-21668	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
62768	chr13	108227471	108227880	+	0	NA	intron (NM_032859, intron 1 of 1)	intron (NM_032859, intron 1 of 1)	9283	NM_032859	84945		NM_032859	ENSG00000139826	ABHD13	BEM46L1|C13orf6|bA153I24.2	abhydrolase domain containing 13	protein-coding
119008	chr19	38897351	38897730	+	0	NA	intron (NM_001193286, intron 1 of 12)	AluJr|SINE|Alu	2078	NM_030593	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
177054	chr4	108004051	108004550	+	0	NA	promoter-TSS (NM_001331027)	promoter-TSS (NM_001331027)	-364	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
138239	chr2	202965951	202966050	+	0	NA	intron (NR_136330, intron 8 of 14)	MLT1F2|LTR|ERVL-MaLR	-48875	NM_001114132	65065		NM_198945	ENSG00000144426	NBEAL1	A530083I02Rik|ALS2CR16|ALS2CR17	neurobeachin like 1	protein-coding
208237	chr7	65430021	65430480	+	0	NA	Intergenic	Intergenic	56395	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
80551	chr16	2798221	2798650	+	0	NA	promoter-TSS (NM_001354586)	promoter-TSS (NM_001354586)	-35	NM_001354586	360226		NM_001354586	ENSG00000215148	PRSS41	TESSP1	serine protease 41	protein-coding
193066	chr6	28711171	28711400	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-56810	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
165575	chr3	101563421	101563680	+	0	NA	intron (NM_017819, intron 1 of 1)	intron (NM_017819, intron 1 of 1)	1682	NM_017819	54931		NM_017819	ENSG00000174173	TRMT10C	COXPD30|HNYA|MRPP1|RG9MTD1	tRNA methyltransferase 10C, mitochondrial RNase P subunit	protein-coding
209927	chr7	92554151	92554450	+	0	NA	Intergenic	AluSp|SINE|Alu	25505	NM_001363366	84060		NM_032120	ENSG00000127993	RBM48	C7orf64|HSPC304	RNA binding motif protein 48	protein-coding
139929	chr2	230779051	230780030	+	0	NA	intron (NM_016289, intron 2 of 8)	intron (NM_016289, intron 2 of 8)	65992	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
113855	chr19	10646051	10646150	+	0	NA	Intergenic	AluSg|SINE|Alu	7772	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
178128	chr4	142126921	142127400	+	0	NA	intron (NM_001385459, intron 11 of 18)	intron (NM_001385459, intron 11 of 18)	178672	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
2624	chr1	10189451	10190100	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-20795	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
226224	chr9	65857171	65857400	+	0	NA	intron (NR_135597, intron 4 of 4).3	intron (NR_135597, intron 4 of 4).3	19339	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
89212	chr16	88618251	88618350	+	0	NA	intron (NM_144604, intron 8 of 17)	intron (NM_144604, intron 8 of 17)	-20272	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
212639	chr7	129472251	129472730	+	0	NA	intron (NM_001134336, intron 18 of 19)	intron (NM_001134336, intron 18 of 19)	-30041	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
63055	chr13	113112151	113112450	+	0	NA	intron (NR_051961, intron 2 of 6)	(CACCTCA)n|Simple_repeat|Simple_repeat	6509	NM_019616	2155		NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
157268	chr22	43995671	43996750	+	0	NA	intron (NM_015380, intron 14 of 14)	GA-rich|Low_complexity|Low_complexity	-3001	NM_001003828	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
173803	chr4	17781221	17781700	+	0	NA	5' UTR (NM_015688, exon 1 of 18)	5' UTR (NM_015688, exon 1 of 18)	161	NM_015688	27146		NM_015688	ENSG00000047662	FAM184B	-	family with sequence similarity 184 member B	protein-coding
15634	chr1	150653351	150653650	+	0	NA	intron (NM_018178, intron 4 of 4)	AluJb|SINE|Alu	-23878	NM_207168	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
25747	chr10	9209121	9209480	+	0	NA	intron (NR_120635, intron 4 of 4)	intron (NR_120635, intron 4 of 4)	-66313	NR_108039	100507163		NR_108039		LINC00709	-	long intergenic non-protein coding RNA 709	ncRNA
187038	chr5	139844451	139845180	+	0	NA	TTS (NM_032289)	TTS (NM_032289)	49007	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
216095	chr8	11017901	11019130	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	16787	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
62539	chr13	99605471	99607040	+	0	NA	promoter-TSS (NR_104592)	promoter-TSS (NR_104592)	-409	NM_206808	171425		NM_206808	ENSG00000125246	CLYBL	CLB	citramalyl-CoA lyase	protein-coding
103682	chr17	78799001	78799600	+	0	NA	intron (NR_169583, intron 20 of 22)	intron (NR_169583, intron 20 of 22)	-16958	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
215940	chr8	8338321	8339180	+	0	NA	intron (NR_163138, intron 5 of 6)	intron (NR_163138, intron 5 of 6)	47494	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
123763	chr19	55089501	55090600	+	0	NA	TTS (NM_001271618)	TTS (NM_001271618)	9658	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
207817	chr7	50314751	50314850	+	0	NA	intron (NM_001291837, intron 1 of 6)	intron (NM_001291837, intron 1 of 6)	-4248	NM_001220768	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
34151	chr10	128059301	128060800	+	0	NA	intron (NR_136149, intron 2 of 3)	(AC)n|Simple_repeat|Simple_repeat	2375	NR_136150	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
137819	chr2	200385621	200385880	+	0	NA	intron (NM_001282743, intron 2 of 11)	AluY|SINE|Alu	76800	NM_001282744	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
106772	chr18	23810421	23811430	+	0	NA	intron (NM_198129, intron 13 of 74)	intron (NM_198129, intron 13 of 74)	-62095	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
113961	chr19	10777001	10777500	+	0	NA	intron (NM_001005362, intron 5 of 19)	intron (NM_001005362, intron 5 of 19)	-3004	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
236568	chrX	72306721	72307600	+	0	NA	promoter-TSS (NM_004143)	promoter-TSS (NM_004143)	-3	NM_001144886	4435		NM_004143	ENSG00000125931	CITED1	MSG1	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1	protein-coding
215696	chr8	1040371	1040530	+	0	NA	intron (NM_001346810, intron 2 of 14)	CpG	-157224	NR_160729	105377777		NR_160729		LOC105377777	-	uncharacterized LOC105377777	ncRNA
233712	chrX	1307401	1307830	+	0	NA	intron (NM_001379162, intron 11 of 11)	MLT2C1|LTR|ERVL	13697	NR_037461	100500894		NR_037461	ENSG00000265658	MIR3690	MIR3690-1|MIR3690-2|hsa-mir-3690-1|hsa-mir-3690-2|mir-3690-1|mir-3690-2	microRNA 3690	ncRNA
40432	chr11	64186901	64187680	+	0	NA	intron (NM_001282653, intron 1 of 13)	intron (NM_001282653, intron 1 of 13)	1119	NM_006819	10963		NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
68157	chr14	75654021	75654630	+	0	NA	intron (NM_007176, intron 3 of 4)	intron (NM_007176, intron 3 of 4)	6551	NM_007176	11161		NM_007176	ENSG00000133935	ERG28	C14orf1|NET51	ergosterol biosynthesis 28 homolog	protein-coding
170332	chr3	184381471	184382200	+	0	NA	intron (NR_130747, intron 5 of 19)	intron (NR_130747, intron 5 of 19)	1525	NM_001304473	8646		NM_003741	ENSG00000090539	CHRD	-	chordin	protein-coding
134866	chr2	148720571	148721050	+	0	NA	intron (NM_015630, intron 2 of 13)	L1PA11|LINE|L1	76059	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
155110	chr22	37612271	37612430	+	0	NA	intron (NM_001172688, intron 1 of 17)	AluY|SINE|Alu	3310	NM_001172688	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
115190	chr19	14450051	14451150	+	0	NA	intron (NM_002741, intron 5 of 21)	intron (NM_002741, intron 5 of 21)	10323	NM_213560	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
8361	chr1	40311101	40311830	+	0	NA	intron (NM_001852, intron 10 of 31)	intron (NM_001852, intron 10 of 31)	5821	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
188791	chr5	157857221	157858500	+	0	NA	intron (NM_001195556, intron 1 of 11)	intron (NM_001195556, intron 1 of 11)	1285	NM_014666	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
8486	chr1	40816871	40817030	+	0	NA	intron (NM_172163, intron 1 of 12)	MIR1_Amn|SINE|MIR	33163	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
239022	chrY	2954801	2955000	+	0	NA	intron (NM_001369709, intron 2 of 5)	MLT1E2|LTR|ERVL-MaLR	19519	NM_001369702	7544		NM_003411	ENSG00000067646	ZFY	ZNF911	zinc finger protein Y-linked	protein-coding
165462	chr3	98689871	98690230	+	0	NA	Intergenic	AluSc8|SINE|Alu	-42186	NM_001323362	10402		NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
123664	chr19	54851501	54851900	+	0	NA	intron (NM_001242867, intron 2 of 7).9	intron (NM_001242867, intron 2 of 7).9	1257	NM_006737	3812		NM_006737	ENSG00000240403	KIR3DL2	3DL2|CD158K|KIR-3DL2|NKAT-4|NKAT4|NKAT4B|p140	killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 2	protein-coding
108034	chr18	59084071	59084700	+	0	NA	Intergenic	Intergenic	48706	NR_024021	390858		NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
32074	chr10	101097021	101097550	+	0	NA	intron (NR_130723, intron 2 of 2)	intron (NR_130723, intron 2 of 2)	30902	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
129779	chr2	71156671	71156830	+	0	NA	Intergenic	Intergenic	26116	NM_005791	10199		NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P|PPP1R106	M-phase phosphoprotein 10	protein-coding
231033	chr9	129608671	129609190	+	0	NA	promoter-TSS (NM_001286796)	promoter-TSS (NM_001286796)	46	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
51688	chr12	53102071	53102230	+	0	NA	exon (NM_002178, exon 4 of 4)	exon (NM_002178, exon 4 of 4)	-1336	NM_003578	8435		NM_003578	ENSG00000167780	SOAT2	ACACT2|ACAT2|ARGP2	sterol O-acyltransferase 2	protein-coding
34858	chr11	332171	332530	+	0	NA	Intergenic	AluY|SINE|Alu	-11490	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
18425	chr1	161458501	161458700	+	0	NA	Intergenic	CpG	-46857	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
188460	chr5	154610371	154611350	+	0	NA	Intergenic	CpG	-14788	NR_036094	100422950		NR_036094	ENSG00000264760	MIR3141	mir-3141	microRNA 3141	ncRNA
200366	chr6	134170821	134171080	+	0	NA	intron (NM_001143676, intron 12 of 13)	intron (NM_001143676, intron 12 of 13)	3916	NM_005627	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
145111	chr20	38777751	38778130	+	0	NA	Intergenic	Intergenic	-27757	NM_001172735	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
18373	chr1	161323801	161324270	+	0	NA	intron (NM_001278172, intron 2 of 3)	intron (NM_001278172, intron 2 of 3)	9654	NM_001035511	6391		NM_003001	ENSG00000143252	SDHC	CYB560|CYBL|PGL3|PPGL3|QPS1|SDH3	succinate dehydrogenase complex subunit C	protein-coding
126027	chr2	25343751	25344350	+	0	NA	Intergenic	MIRb|SINE|MIR	-1460	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
217386	chr8	28118301	28119080	+	0	NA	intron (NM_018091, intron 7 of 14)	intron (NM_018091, intron 7 of 14)	25551	NM_001284224	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
108301	chr18	63363971	63364930	+	0	NA	intron (NM_002035, intron 1 of 9)	AluSz|SINE|Alu	2756	NM_002035	2531		NM_002035	ENSG00000119537	KDSR	DHSR|EKVP4|FVT1|SDR35C1	3-ketodihydrosphingosine reductase	protein-coding
122302	chr19	49108901	49109430	+	0	NA	TTS (NM_001301069)	TTS (NM_001301069)	-5205	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
40254	chr11	63682901	63683400	+	0	NA	intron (NR_049750, intron 1 of 5)	intron (NR_049750, intron 1 of 5)	1650	NM_201430	10313		NM_006054	ENSG00000133318	RTN3	ASYIP|HAP|NSPL2|NSPLII|RTN3-A1	reticulon 3	protein-coding
2401	chr1	9546471	9547100	+	0	NA	intron (NM_032315, intron 1 of 6)	intron (NM_032315, intron 1 of 6)	7320	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
196018	chr6	42020971	42021400	+	0	NA	intron (NM_001136017, intron 1 of 4)	MER44A|DNA|TcMar-Tigger	27709	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
187292	chr5	141591901	141592580	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	26760	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
138148	chr2	202317151	202317650	+	0	NA	Intergenic	Intergenic	24349	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
171334	chr3	195995451	195995550	+	0	NA	Intergenic	L1M5|LINE|L1	-5221	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
146648	chr20	50381821	50382680	+	0	NA	Intergenic	Intergenic	-60908	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
61168	chr13	49107951	49108250	+	0	NA	intron (NM_001079673, intron 3 of 25)	L2|LINE|L2	-2217	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
52623	chr12	56264801	56265000	+	0	NA	Intergenic	AluY|SINE|Alu	-2042	NM_144576	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
118479	chr19	35903211	35904700	+	0	NA	TTS (NM_198125)	TTS (NM_198125)	1426	NM_001007469	10870		NM_014266	ENSG00000126264	HCST	DAP10|KAP10|PIK3AP	hematopoietic cell signal transducer	protein-coding
209174	chr7	75367501	75367700	+	0	NA	non-coding (NR_040583, exon 10 of 10)	non-coding (NR_040583, exon 10 of 10)	8400	NR_040583	54441		NM_018991	ENSG00000290951	STAG3L1	STAG3L1P|STAG3L2|STAG3L3	STAG3 cohesin complex component like 1 (pseudogene)	pseudo
179949	chr5	778351	778650	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	6229	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
163082	chr3	50087201	50087400	+	0	NA	Intergenic	Intergenic	-1619	NR_036627	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
171001	chr3	194686751	194687290	+	0	NA	exon (NM_153690, exon 1 of 1)	exon (NM_153690, exon 1 of 1)	1137	NM_153690	131583		NM_153690	ENSG00000185112	FAM43A	-	family with sequence similarity 43 member A	protein-coding
37097	chr11	13274601	13274800	+	0	NA	Intergenic	MIRb|SINE|MIR	-1952	NM_001351804	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
174681	chr4	41933871	41934030	+	0	NA	Intergenic	L2c|LINE|L2	-1479	NM_018126	55161		NM_018126	ENSG00000109133	TMEM33	1600019D15Rik|Pom33|SHINC-3|SHINC3	transmembrane protein 33	protein-coding
168733	chr3	150764851	150765600	+	0	NA	Intergenic	MIR|SINE|MIR	-2056	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
61400	chr13	51633001	51633200	+	0	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	48638	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
181358	chr5	40499151	40499450	+	0	NA	Intergenic	Intergenic	-180615	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
177830	chr4	125314651	125315730	+	0	NA	5' UTR (NM_001291303, exon 1 of 18)	5' UTR (NM_001291303, exon 1 of 18)	235	NM_024582	79633		NM_024582	ENSG00000196159	FAT4	CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2	FAT atypical cadherin 4	protein-coding
67545	chr14	71167721	71168480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-152376	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
100155	chr17	58541251	58541530	+	0	NA	promoter-TSS (NM_001256782)	promoter-TSS (NM_001256782)	-572	NM_001198713	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
76621	chr15	75455501	75456780	+	0	NA	promoter-TSS (NM_001145357)	promoter-TSS (NM_001145357)	-325	NM_001145357	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
155228	chr22	37910401	37911480	+	0	NA	intron (NM_033386, intron 1 of 15)	intron (NM_033386, intron 1 of 15)	4643	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
65869	chr14	55070621	55070880	+	0	NA	TTS (NM_144578)	TTS (NM_144578)	19103	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
61861	chr13	77009121	77009580	+	0	NA	intron (NM_012158, intron 4 of 4)	AluSx|SINE|Alu	17269	NM_006493	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
195486	chr6	37137251	37137950	+	0	NA	Intergenic	Intergenic	-32552	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
106576	chr18	21748021	21748650	+	0	NA	intron (NM_020774, intron 1 of 20)	intron (NM_020774, intron 1 of 20)	7543	NM_020774	57534		NM_020774	ENSG00000101752	MIB1	DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6	MIB E3 ubiquitin protein ligase 1	protein-coding
108850	chr18	79203221	79203480	+	0	NA	intron (NM_198531, intron 9 of 29)	intron (NM_198531, intron 9 of 29)	133956	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
77953	chr15	89361501	89363000	+	0	NA	promoter-TSS (NR_133002)	promoter-TSS (NR_133002)	-271	NR_133002	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
2091	chr1	7959801	7960000	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1754	NM_001123377	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
167422	chr3	129023921	129024180	+	0	NA	intron (NM_024768, intron 2 of 7)	L2c|LINE|L2	-20048	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
168634	chr3	149813981	149814450	+	0	NA	5' UTR (NM_001378285, exon 2 of 11)	5' UTR (NM_001378285, exon 2 of 11)	1000	NR_165474	11342		NM_007282	ENSG00000082996	RNF13	DEE73|EIEE73|RZF	ring finger protein 13	protein-coding
184543	chr5	102747501	102747900	+	0	NA	Intergenic	Intergenic	-7083	NM_001319943	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
41248	chr11	65792771	65793130	+	0	NA	intron (NM_004561, intron 1 of 3)	intron (NM_004561, intron 1 of 3)	-2082	NR_108085	101927828		NR_108085	ENSG00000255120	OVOL1-AS1	-	OVOL1 antisense RNA 1	ncRNA
171280	chr3	195893351	195893780	+	0	NA	promoter-TSS (NM_001308046)	promoter-TSS (NM_001308046)	-781	NM_001308046	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
204878	chr7	5984001	5984830	+	0	NA	intron (NR_136154, intron 11 of 14)	intron (NR_136154, intron 11 of 14)	-13732	NM_173565	222967		NM_173565	ENSG00000155026	RSPH10B	-	radial spoke head 10 homolog B	protein-coding
233516	chrM	7601	8700	+	0	NA	promoter-TSS (NR_162149).2	promoter-TSS (NR_162149).2	-636	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
228316	chr9	98191571	98193750	+	0	NA	promoter-TSS (NM_052820)	promoter-TSS (NM_052820)	-23	NM_052820	7464		NM_003389	ENSG00000106789	CORO2A	CLIPINB|IR10|WDR2	coronin 2A	protein-coding
20497	chr1	198650771	198651330	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	12010	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
190505	chr5	180469521	180469780	+	0	NA	Intergenic	Intergenic	-24729	NM_001370472	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
148023	chr20	63133001	63133400	+	0	NA	Intergenic	Intergenic	-30881	NR_003245	768097		NR_003245	ENSG00000231133	HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B	ncRNA
214936	chr7	151695151	151695650	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	40863	NM_001363698	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
35682	chr11	1886571	1886980	+	0	NA	exon (NM_002339, exon 8 of 11)	exon (NM_002339, exon 8 of 11)	6730	NR_107001	102465993		NR_107001	ENSG00000284594	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
11653	chr1	91802401	91802600	+	0	NA	intron (NR_036634, intron 2 of 17)	AluSx1|SINE|Alu	83651	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
233831	chrX	1490451	1490750	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-36838	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
221386	chr8	123396101	123397380	+	0	NA	promoter-TSS (NM_014109)	promoter-TSS (NM_014109)	-293	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
237353	chrX	118646701	118647180	+	0	NA	intron (NM_144658, intron 40 of 52)	intron (NM_144658, intron 40 of 52)	-80666	NM_001560	3597		NM_001560	ENSG00000131724	IL13RA1	CD213A1|CT19|IL-13Ra|NR4	interleukin 13 receptor subunit alpha 1	protein-coding
178210	chr4	142559971	142560530	+	0	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	505	NM_001385338	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
180025	chr5	1048321	1048580	+	0	NA	Intergenic	Intergenic	14524	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
182247	chr5	57177621	57178630	+	0	NA	intron (NM_001331037, intron 2 of 12)	intron (NM_001331037, intron 2 of 12)	2677	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
149155	chr21	17803001	17803200	+	0	NA	intron (NM_017447, intron 2 of 4)	intron (NM_017447, intron 2 of 4)	-10591	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
182323	chr5	59035871	59036800	+	0	NA	intron (NM_001364603, intron 7 of 15)	intron (NM_001364603, intron 7 of 15)	3141	NM_001197222	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
124785	chr2	7437151	7437450	+	0	NA	intron (NR_038432, intron 4 of 5)	MER58A|DNA|hAT-Charlie	16039	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
130378	chr2	85304971	85305550	+	0	NA	exon (NM_031283, exon 8 of 12)	exon (NM_031283, exon 8 of 12)	22729	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
164311	chr3	57688171	57688530	+	0	NA	intron (NM_152678, intron 1 of 19)	intron (NM_152678, intron 1 of 19)	4727	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
23889	chr1	234954751	234955350	+	0	NA	Intergenic	Intergenic	8949	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
95547	chr17	36675351	36676180	+	0	NA	Intergenic	Intergenic	74182	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
72618	chr15	38069121	38069580	+	0	NA	non-coding (NR_147201, exon 3 of 3)	non-coding (NR_147201, exon 3 of 3)	3640	NR_147201	107984773		NR_147199	ENSG00000236914	LINC01852	-	long intergenic non-protein coding RNA 1852	ncRNA
238998	chrX	156002671	156003030	+	0	NA	intron (NM_176786, intron 2 of 8)	intron (NM_176786, intron 2 of 8)	5154	NM_002186	3581		NM_002186	ENSG00000124334	IL9R	CD129|IL-9R	interleukin 9 receptor	protein-coding
179588	chr4	185385071	185385630	+	0	NA	intron (NM_001385602, intron 1 of 8)	intron (NM_001385602, intron 1 of 8)	-6352	NM_018409	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
156961	chr22	42366501	42367000	+	0	NA	intron (NR_120595, intron 1 of 1)	intron (NR_120595, intron 1 of 1)	2458	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
220060	chr8	93880321	93880580	+	0	NA	Intergenic	Intergenic	35669	NR_039602	100616169		NR_039602	ENSG00000284288	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
127581	chr2	42752371	42752530	+	0	NA	intron (NM_001282755, intron 17 of 17)	intron (NM_001282755, intron 17 of 17)	11811	NM_148962	165140		NM_148962	ENSG00000162881	OXER1	GPCR|GPR170|TG1019	oxoeicosanoid receptor 1	protein-coding
99344	chr17	49858921	49859380	+	0	NA	Intergenic	MIR3|SINE|MIR	-11133	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
236792	chrX	79145371	79145730	+	0	NA	intron (NM_032553, intron 1 of 2)	intron (NM_032553, intron 1 of 2)	862	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
148329	chr20	63774101	63774300	+	0	NA	intron (NM_025224, intron 3 of 4)	intron (NM_025224, intron 3 of 4)	31303	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
13563	chr1	115838451	115838750	+	0	NA	intron (NM_005599, intron 2 of 2)	CpG	2103	NM_001111061	4808		NM_005599	ENSG00000177551	NHLH2	HEN2|HH27|NSCL2|bHLHa34	nescient helix-loop-helix 2	protein-coding
168116	chr3	138784801	138785200	+	0	NA	intron (NM_006219, intron 2 of 23)	SVA_B|Retroposon|SVA	49928	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
55512	chr12	105053021	105053350	+	0	NA	intron (NR_027752, intron 10 of 22)	intron (NR_027752, intron 10 of 22)	31273	NM_001034173	160428		NM_001034173	ENSG00000136010	ALDH1L2	mtFDH	aldehyde dehydrogenase 1 family member L2	protein-coding
192509	chr6	25009621	25010730	+	0	NA	intron (NM_001286446, intron 1 of 13)	MSTB1|LTR|ERVL-MaLR	32113	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
217628	chr8	30055021	30055280	+	0	NA	Intergenic	Intergenic	27914	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
63989	chr14	22314321	22314650	+	0	NA	Intergenic	Intergenic	118268	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
184270	chr5	96728071	96728530	+	0	NA	intron (NM_001042441, intron 6 of 30)	intron (NM_001042441, intron 6 of 30)	-15302	NR_104285	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
141244	chr2	239707101	239707630	+	0	NA	Intergenic	(TGCCCTGCCC)n|Simple_repeat|Simple_repeat	-55495	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
130651	chr2	86188121	86188380	+	0	NA	intron (NM_001100169, intron 1 of 14)	L1MB5|LINE|L1	4858	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
101441	chr17	67433121	67434650	+	0	NA	intron (NM_181671, intron 1 of 9)	FAM|SINE|Alu	-37604	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
224111	chr9	4615771	4616130	+	0	NA	intron (NR_148446, intron 6 of 8)	MIRb|SINE|MIR	46273	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
37129	chr11	13338671	13338880	+	0	NA	intron (NM_001351821, intron 3 of 19)	MIRb|SINE|MIR	60985	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
129797	chr2	71347621	71347950	+	0	NA	intron (NM_014497, intron 1 of 27)	intron (NM_014497, intron 1 of 27)	16003	NM_014497	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
53824	chr12	69332221	69332480	+	0	NA	Intergenic	LTR22|LTR|ERVK	-16031	NM_000239	4069		NM_000239	ENSG00000090382	LYZ	LYZF1|LZM	lysozyme	protein-coding
6081	chr1	27233251	27235000	+	0	NA	promoter-TSS (NM_001276252)	promoter-TSS (NM_001276252)	-507	NM_001276252	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
97416	chr17	43401301	43401900	+	0	NA	TTS (NM_001661)	TTS (NM_001661)	2607	NM_001661	379		NM_001661	ENSG00000175906	ARL4D	ARF4L	ADP ribosylation factor like GTPase 4D	protein-coding
154743	chr22	36478901	36479630	+	0	NA	intron (NM_012473, intron 2 of 3)	MIR|SINE|MIR	2375	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
96213	chr17	39769071	39769230	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	9075	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
55388	chr12	104437901	104438500	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-18748	NM_018413	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
182029	chr5	55582321	55582580	+	0	NA	Intergenic	Intergenic	-47372	NR_103485	8611		NM_003711	ENSG00000067113	PLPP1	LLP1a|LPP1|PAP-2a|PAP2|PPAP2A	phospholipid phosphatase 1	protein-coding
63238	chr13	113932201	113932400	+	0	NA	Intergenic	L1MD1|LINE|L1	-3309	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
33107	chr10	110992821	110993680	+	0	NA	intron (NM_001324336, intron 3 of 8)	intron (NM_001324336, intron 3 of 8)	4324	NR_031614	100313921		NR_031614	ENSG00000221214	MIR548E	MIRN548E|hsa-mir-548e	microRNA 548e	ncRNA
238966	chrX	155216021	155217080	+	0	NA	promoter-TSS (NM_003372)	promoter-TSS (NM_003372)	90	NM_003372	7411		NM_003372	ENSG00000155959	VBP1	HIBBJ46|PFD3|PFDN3|VBP-1	VHL binding protein 1	protein-coding
147275	chr20	57483401	57483600	+	0	NA	Intergenic	THE1A|LTR|ERVL-MaLR	41367	NM_001269052	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
107057	chr18	32469021	32469500	+	0	NA	intron (NM_022751, intron 1 of 5)	intron (NM_022751, intron 1 of 5)	1622	NM_001242409	64762		NM_022751	ENSG00000141441	GAREM1	C18orf11|FAM59A|GAREM|Gm944	GRB2 associated regulator of MAPK1 subtype 1	protein-coding
30012	chr10	73776501	73776900	+	0	NA	TTS (NM_001284194)	TTS (NM_001284194)	4409	NM_001284194	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
237059	chrX	103459771	103460480	+	0	NA	Intergenic	L1PA4|LINE|L1	59364	NM_080879	142684		NM_080879	ENSG00000172476	RAB40A	RAR2|RAR2A	RAB40A, member RAS oncogene family	protein-coding
130901	chr2	87456421	87457000	+	0	NA	intron (NR_024206, intron 1 of 1)	intron (NR_024206, intron 1 of 1)	1283	NR_024206	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
146960	chr20	52410121	52411580	+	0	NA	Intergenic	Intergenic	-209988	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
161186	chr3	39133751	39134980	+	0	NA	intron (NR_159496, intron 21 of 28)	(CTCC)n|Simple_repeat|Simple_repeat	-3841	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
126138	chr2	26172701	26174330	+	0	NA	intron (NM_001168241, intron 1 of 5)	CpG	427	NM_001168241	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
137602	chr2	197291021	197291330	+	0	NA	intron (NR_046837, intron 5 of 5)	AluJr|SINE|Alu	11344	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
181671	chr5	50436271	50436980	+	0	NA	intron (NM_198449, intron 1 of 8)	intron (NM_198449, intron 1 of 8)	4663	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
76570	chr15	75282601	75282800	+	0	NA	promoter-TSS (NM_001145224)	promoter-TSS (NM_001145224)	-141	NM_001145224	653643		NM_001145224	ENSG00000140478	GOLGA6D	-	golgin A6 family member D	protein-coding
128286	chr2	54598751	54599050	+	0	NA	intron (NM_178313, intron 1 of 30)	MER47C|DNA|TcMar-Tigger	40506	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
156855	chr22	42065701	42066580	+	0	NA	intron (NM_001362850, intron 6 of 9)	intron (NM_001362850, intron 6 of 9)	4672	NM_000262	4668		NM_000262	ENSG00000198951	NAGA	D22S674|GALB	alpha-N-acetylgalactosaminidase	protein-coding
178037	chr4	139558301	139559080	+	0	NA	Intergenic	Intergenic	-1921	NM_001306199	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
207254	chr7	43867501	43867780	+	0	NA	intron (NM_001204871, intron 6 of 6)	AluSg7|SINE|Alu	1877	NM_032014	64951		NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
226409	chr9	70421601	70422280	+	0	NA	Intergenic	Intergenic	-7283	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
21961	chr1	208242321	208242580	+	0	NA	intron (NM_025179, intron 1 of 31)	intron (NM_025179, intron 1 of 31)	1934	NM_025179	5362		NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
25969	chr10	11686771	11686930	+	0	NA	Intergenic	AluSc|SINE|Alu	-55532	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
187127	chr5	140420701	140421300	+	0	NA	intron (NM_020690, intron 1 of 35)	intron (NM_020690, intron 1 of 35)	19167	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
190164	chr5	178133951	178134050	+	0	NA	intron (NM_022762, intron 2 of 10)	AluY|SINE|Alu	2986	NM_022762	64777		NM_022762	ENSG00000145916	RMND5B	GID2|GID2B	required for meiotic nuclear division 5 homolog B	protein-coding
38005	chr11	35076651	35077130	+	0	NA	Intergenic	Intergenic	61142	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
137952	chr2	201134421	201134680	+	0	NA	intron (NR_147241, intron 2 of 4)	AluSx1|SINE|Alu	1769	NM_001202518	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
82409	chr16	16226671	16227030	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-3356	NM_001171	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
213015	chr7	131016651	131017500	+	0	NA	intron (NR_109850, intron 3 of 5)	L1MB5|LINE|L1	89955	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
193232	chr6	29892321	29892580	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	4877	NR_001434	3136		NR_001434		HLA-H	HLAHP	major histocompatibility complex, class I, H (pseudogene)	pseudo
27412	chr10	31364101	31364700	+	0	NA	intron (NM_001368169, intron 1 of 1)	intron (NM_001368169, intron 1 of 1)	35355	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
11334	chr1	89526321	89526580	+	0	NA	intron (NM_001369817, intron 1 of 5)	AluSx1|SINE|Alu	1621	NM_001369819	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
209402	chr7	76327471	76328000	+	0	NA	3' UTR (NM_012479, exon 2 of 2)	3' UTR (NM_012479, exon 2 of 2)	25062	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
232157	chr9	134099071	134099430	+	0	NA	Intergenic	L1MC3|LINE|L1	-31224	NM_007371	8019		NM_007371	ENSG00000169925	BRD3	FSHRG2|ORFX|RING3L	bromodomain containing 3	protein-coding
102159	chr17	75127171	75127830	+	0	NA	intron (NM_024585, intron 2 of 2)	AluSx|SINE|Alu	4242	NR_045513	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
154644	chr22	36330971	36332000	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-44578	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
194752	chr6	33906901	33907400	+	0	NA	Intergenic	L2|LINE|L2	8015	NR_106982	102466816		NR_106982	ENSG00000276824	MIR7159	hsa-mir-7159	microRNA 7159	ncRNA
121216	chr19	46618671	46619030	+	0	NA	Intergenic	Intergenic	6239	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
219725	chr8	81029121	81029380	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	82818	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
34912	chr11	402421	403150	+	0	NA	intron (NM_007183, intron 8 of 12)	CpG-3735	8576	NM_007183	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
49417	chr12	22684521	22684800	+	0	NA	intron (NM_018638, intron 7 of 7)	intron (NM_018638, intron 7 of 7)	59489	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
39489	chr11	61015801	61016200	+	0	NA	intron (NM_006725, intron 9 of 12)	intron (NM_006725, intron 9 of 12)	44320	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
234002	chrX	3587671	3587830	+	0	NA	Intergenic	LTR8|LTR|ERV1	-55499	NR_145722	109616969		NR_145722	ENSG00000212214	SNORA48B	-	small nucleolar RNA, H/ACA box 48B	snoRNA
210756	chr7	100683551	100683650	+	0	NA	exon (NM_001375766, exon 21 of 28)	exon (NM_001375766, exon 21 of 28)	9860	NM_005273	2783		NM_005273	ENSG00000172354	GNB2	HG2C1|SSS4|SSS4; NEDHYDF	G protein subunit beta 2	protein-coding
4999	chr1	24385171	24385780	+	0	NA	intron (NM_178122, intron 2 of 7)	intron (NM_178122, intron 2 of 7)	-28012	NM_001322854	57185		NM_020448	ENSG00000001461	NIPAL3	DJ462O23.2|NPAL3|SLC57A5	NIPA like domain containing 3	protein-coding
231682	chr9	131698171	131698730	+	0	NA	intron (NM_001377935, intron 1 of 26)	MIRb|SINE|MIR	11392	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
128764	chr2	62207401	62207900	+	0	NA	intron (NM_006577, intron 1 of 1)	MER1B|DNA|hAT-Charlie	1824	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
129542	chr2	69770001	69770730	+	0	NA	intron (NM_001365496, intron 2 of 13)	intron (NM_001365496, intron 2 of 13)	28231	NM_001320700	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
205771	chr7	23528151	23528250	+	0	NA	intron (NM_001362760, intron 1 of 8)	intron (NM_001362760, intron 1 of 8)	3781	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
27635	chr10	32952101	32952300	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	5694	NM_133376	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
178804	chr4	153502251	153502550	+	0	NA	intron (NM_015196, intron 3 of 34)	MLT1J|LTR|ERVL-MaLR	36040	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
40930	chr11	65261521	65263100	+	0	NA	exon (NM_002689, exon 1 of 18)	exon (NM_002689, exon 1 of 18)	348	NM_002689	23649		NM_002689	ENSG00000014138	POLA2	-	DNA polymerase alpha 2, accessory subunit	protein-coding
18863	chr1	167913801	167914230	+	0	NA	5' UTR (NM_018417, exon 1 of 33)	5' UTR (NM_018417, exon 1 of 33)	119	NM_001167749	55811		NM_018417	ENSG00000143199	ADCY10	HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC	adenylate cyclase 10	protein-coding
235258	chrX	41703571	41703800	+	0	NA	intron (NM_001126055, intron 5 of 24)	L1ME3Cz|LINE|L1	14712	NM_001097579	2857		NM_005300	ENSG00000171659	GPR34	LPS1|LYPSR1	G protein-coupled receptor 34	protein-coding
64508	chr14	24366701	24367280	+	0	NA	promoter-TSS (NM_001136022)	promoter-TSS (NM_001136022)	79	NM_001136022	4776		NM_004554	ENSG00000100968	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T cells 4	protein-coding
89841	chr16	89588801	89589000	+	0	NA	intron (NM_153636, intron 10 of 14)	intron (NM_153636, intron 10 of 14)	13142	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
172418	chr4	1850421	1850950	+	0	NA	intron (NM_012318, intron 1 of 13)	AluSq2|SINE|Alu	5471	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
112983	chr19	7871401	7872980	+	0	NA	exon (NM_001190467, exon 5 of 6)	exon (NM_001190467, exon 5 of 6)	2200	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
238612	chrX	153938251	153938850	+	0	NA	intron (NM_002910, intron 9 of 10)	intron (NM_002910, intron 9 of 10)	-3513	NM_003491	8260		NM_003491	ENSG00000102030	NAA10	ARD1|ARD1A|ARD1P|DXS707|LZMS|MAA|MCOPS1|NATD|OGDNS|TE2|hARD1	N-alpha-acetyltransferase 10, NatA catalytic subunit	protein-coding
58524	chr12	132204301	132204800	+	0	NA	intron (NM_001122636, intron 6 of 10)	MLT2B1|LTR|ERVL	1478	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
152292	chr22	20315651	20315950	+	0	NA	intron (NM_033257, intron 3 of 4)	intron (NM_033257, intron 3 of 4)	4260	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
112212	chr19	5696351	5696450	+	0	NA	intron (NR_076392, intron 12 of 18)	intron (NR_076392, intron 12 of 18)	6105	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
172685	chr4	2750921	2751680	+	0	NA	intron (NM_001292016, intron 1 of 4)	intron (NM_001292016, intron 1 of 4)	5036	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
89148	chr16	88521621	88522500	+	0	NA	non-coding (NR_148997, exon 3 of 4)	non-coding (NR_148997, exon 3 of 4)	8993	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
106549	chr18	21610301	21610500	+	0	NA	Intergenic	AluJb|SINE|Alu	-1914	NM_001291916	6632		NM_006938	ENSG00000167088	SNRPD1	HsT2456|SMD1|SNRPD|Sm-D1	small nuclear ribonucleoprotein D1 polypeptide	protein-coding
48979	chr12	13046071	13046250	+	0	NA	intron (NM_020853, intron 1 of 12)	5S|rRNA|rRNA	1779	NM_020853	57613		NM_020853	ENSG00000084444	FAM234B	KIAA1467	family with sequence similarity 234 member B	protein-coding
236547	chrX	72180801	72182330	+	0	NA	promoter-TSS (NM_001170747)	promoter-TSS (NM_001170747)	-111	NM_001170747	5303		NM_006223	ENSG00000102309	PIN4	EPVH|PAR14|PAR17|hEPVH|hPar14|hPar17	peptidylprolyl cis/trans isomerase, NIMA-interacting 4	protein-coding
90984	chr17	2707551	2708450	+	0	NA	intron (NM_001366662, intron 1 of 25)	intron (NM_001366662, intron 1 of 25)	3764	NM_001366661	23277		NM_015229	ENSG00000132361	CLUH	CLU1	clustered mitochondria homolog	protein-coding
8437	chr1	40649921	40650300	+	0	NA	intron (NM_014747, intron 1 of 7)	intron (NM_014747, intron 1 of 7)	15572	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
183691	chr5	80755811	80756880	+	0	NA	intron (NM_002439, intron 12 of 23)	L1MEd|LINE|L1	-101362	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
211554	chr7	105531431	105533100	+	0	NA	promoter-TSS (NM_021930)	promoter-TSS (NM_021930)	64	NM_021930	60561		NM_021930	ENSG00000135249	RINT1	ILFS3|RINT-1	RAD50 interactor 1	protein-coding
221501	chr8	124562801	124563000	+	0	NA	exon (NM_001282971, exon 11 of 15)	exon (NM_001282971, exon 11 of 15)	23777	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
157323	chr22	44619771	44620930	+	0	NA	intron (NR_044991, intron 3 of 4)	CpG	5069	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
56059	chr12	110563421	110564650	+	0	NA	intron (NM_139283, intron 1 of 5)	intron (NM_139283, intron 1 of 5)	19283	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
33309	chr10	114827251	114827980	+	0	NA	intron (NM_001135051, intron 1 of 16)	AluY|SINE|Alu	5835	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
15018	chr1	148282821	148283250	+	0	NA	Intergenic	L1M5|LINE|L1	-35964	NR_120331	101927468		NR_120331	ENSG00000227733	LOC101927468	-	uncharacterized LOC101927468	ncRNA
160013	chr3	18395421	18395680	+	0	NA	intron (NM_001322873, intron 6 of 10)	MIRb|SINE|MIR	29789	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
220119	chr8	94640121	94640630	+	0	NA	promoter-TSS (NM_001122827)	promoter-TSS (NM_001122827)	-799	NM_001034915	54845		NM_017697	ENSG00000104413	ESRP1	DFNB109|RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
197709	chr6	85680671	85680830	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-2017	NR_003038	387066		NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG	small nucleolar RNA host gene 5	ncRNA
162315	chr3	47424951	47425050	+	0	NA	intron (NM_001320044, intron 5 of 19)	intron (NM_001320044, intron 5 of 19)	43979	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
134909	chr2	149586101	149586480	+	0	NA	intron (NM_015702, intron 2 of 7)	intron (NM_015702, intron 2 of 7)	-1068	NR_110240	101929231		NR_110240	ENSG00000231969	MMADHC-DT	-	MMADHC divergent transcript	ncRNA
44030	chr11	95092051	95092150	+	0	NA	intron (NM_015036, intron 1 of 1)	L2c|LINE|L2	2254	NM_015036	23052		NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
167950	chr3	136305951	136306050	+	0	NA	intron (NM_001178014, intron 10 of 15)	L1MC4|LINE|L1	55660	NM_000532	5096		NM_000532	ENSG00000114054	PCCB	-	propionyl-CoA carboxylase subunit beta	protein-coding
103033	chr17	77096201	77097080	+	0	NA	intron (NM_001204410, intron 3 of 18)	intron (NM_001204410, intron 3 of 18)	7223	NR_106997	102466864		NR_106997	ENSG00000284250	MIR6516	hsa-mir-6516	microRNA 6516	ncRNA
128663	chr2	61453721	61454180	+	0	NA	intron (NM_014709, intron 1 of 79)	intron (NM_014709, intron 1 of 79)	17137	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
204907	chr7	6152351	6153050	+	0	NA	intron (NM_001365764, intron 14 of 15)	intron (NM_001365764, intron 14 of 15)	19437	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
26204	chr10	14560271	14560650	+	0	NA	intron (NM_001320736, intron 1 of 4)	intron (NM_001320736, intron 1 of 4)	-4280	NM_001320738	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
37327	chr11	14823121	14823380	+	0	NA	intron (NM_001363569, intron 7 of 15)	L1PA13|LINE|L1	68421	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
80237	chr16	2195951	2197330	+	0	NA	promoter-TSS (NM_020764)	promoter-TSS (NM_020764)	-35	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
59933	chr13	31148851	31149150	+	0	NA	intron (NM_001286503, intron 8 of 16)	intron (NM_001286503, intron 8 of 16)	12904	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
122781	chr19	50314251	50314550	+	0	NA	non-coding (NR_110912, exon 4 of 4)	non-coding (NR_110912, exon 4 of 4)	14671	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
114028	chr19	10923251	10924830	+	0	NA	TTS (NM_001370088)	TTS (NM_001370088)	4599	NM_024029	78992		NM_024029	ENSG00000130733	YIPF2	FinGER2|YIPFbeta3B|Yip5C	Yip1 domain family member 2	protein-coding
157247	chr22	43378121	43378750	+	0	NA	Intergenic	L1MEd|LINE|L1	-21896	NR_146918	105373054		NR_146918	ENSG00000236117	LINC01639	-	long intergenic non-protein coding RNA 1639	ncRNA
108782	chr18	77218551	77218850	+	0	NA	Intergenic	Intergenic	-31148	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
82670	chr16	19639771	19640530	+	0	NA	intron (NR_158160, intron 19 of 28)	intron (NR_158160, intron 19 of 28)	-76306	NR_130967	124152		NM_153208	ENSG00000174628	IQCK	-	IQ motif containing K	protein-coding
118446	chr19	35862471	35862930	+	0	NA	intron (NM_032123, intron 12 of 15)	intron (NM_032123, intron 12 of 15)	-5745	NM_005166	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
179976	chr5	858001	858900	+	0	NA	Intergenic	Intergenic	-7464	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
70693	chr14	103121971	103122330	+	0	NA	intron (NR_138038, intron 1 of 1)	intron (NR_138038, intron 1 of 1)	759	NR_138038	105370683		NR_138038	ENSG00000259717	LINC00677	C14orf74	long intergenic non-protein coding RNA 677	ncRNA
204657	chr7	5429271	5430280	+	0	NA	promoter-TSS (NM_001354886)	promoter-TSS (NM_001354886)	-848	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
34657	chr10	133334701	133336300	+	0	NA	intron (NM_015722, intron 1 of 5)	CpG	1396	NM_015722	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
101712	chr17	68514921	68515800	+	0	NA	promoter-TSS (NM_001276290)	promoter-TSS (NM_001276290)	-34	NM_001276290	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
167600	chr3	129568871	129569030	+	0	NA	intron (NM_015103, intron 20 of 35)	L1MB8|LINE|L1	20565	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
134659	chr2	144457851	144458330	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-61524	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
51887	chr12	53507151	53507450	+	0	NA	TTS (NM_004178)	TTS (NM_004178)	184	NM_001320296	8620		NM_003717	ENSG00000139574	NPFF	FMRFAL	neuropeptide FF-amide peptide precursor	protein-coding
94084	chr17	27568771	27569730	+	0	NA	intron (NM_001367810, intron 2 of 18)	intron (NM_001367810, intron 2 of 18)	-61938	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
65520	chr14	51906871	51907300	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	11486	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
42712	chr11	72676471	72677430	+	0	NA	Intergenic	Intergenic	-2528	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
87686	chr16	74655351	74655850	+	0	NA	intron (NM_001370540, intron 3 of 13)	Tigger1|DNA|TcMar-Tigger	11277	NM_018124	55159		NM_018124	ENSG00000168411	RFWD3	FANCW|RNF201	ring finger and WD repeat domain 3	protein-coding
68651	chr14	89957871	89958030	+	0	NA	intron (NM_018319, intron 2 of 16)	LTR28C|LTR|ERV1	2023	NM_001008744	55775		NM_018319	ENSG00000042088	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
185148	chr5	119321401	119322080	+	0	NA	intron (NM_001286815, intron 2 of 2)	L2a|LINE|L2	-11435	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
219892	chr8	85659351	85660030	+	0	NA	Intergenic	Intergenic	2823	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
222115	chr8	131910071	131910800	+	0	NA	intron (NM_001323555, intron 1 of 22)	AluSx|SINE|Alu	-6338	NM_001323556	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
170717	chr3	187994051	187995130	+	0	NA	Intergenic	Intergenic	-18183	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
140126	chr2	231531551	231532030	+	0	NA	Intergenic	Intergenic	-1345	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
32246	chr10	101842001	101842530	+	0	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	1535	NM_014591	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
82521	chr16	17607271	17607430	+	0	NA	Intergenic	Intergenic	-136390	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
228537	chr9	101311721	101311980	+	0	NA	intron (NM_207299, intron 5 of 7)	intron (NM_207299, intron 5 of 7)	71714	NM_001127610	570		NM_001701	ENSG00000136881	BAAT	BACAT|BACD1|BAT|HCHO	bile acid-CoA:amino acid N-acyltransferase	protein-coding
233337	chr9	137443351	137443650	+	0	NA	Intergenic	AluY|SINE|Alu	-2143	NM_001033113	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
103339	chr17	78013371	78014050	+	0	NA	intron (NM_001142640, intron 2 of 21)	L2b|LINE|L2	9473	NM_018996	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
189056	chr5	170245201	170245400	+	0	NA	TTS (NM_005565)	TTS (NM_005565)	12294	NM_001305393	133874		NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
61679	chr13	74015171	74015750	+	0	NA	intron (NM_007249, intron 1 of 7)	MIRb|SINE|MIR	118469	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
65671	chr14	52551751	52553500	+	0	NA	promoter-TSS (NR_148417)	promoter-TSS (NR_148417)	-42	NM_001160047	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
160319	chr3	27591601	27592050	+	0	NA	Intergenic	(ACACAA)n|Simple_repeat|Simple_repeat	-107441	NM_001321103	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
157029	chr22	42558251	42558650	+	0	NA	exon (NM_001284334, exon 5 of 10)	exon (NM_001284334, exon 5 of 10)	4494	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
206524	chr7	34906351	34906680	+	0	NA	Intergenic	L1PA3|LINE|L1	34319	NR_031666	100302152		NR_031666	ENSG00000221669	MIR548N	MIRN548N|hsa-mir-548n	microRNA 548n	ncRNA
127306	chr2	38759571	38759930	+	0	NA	Intergenic	AluSg|SINE|Alu	-8256	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
190932	chr6	2879371	2879530	+	0	NA	Intergenic	L1PBa1|LINE|L1	-2940	NR_033851	221756		NM_182544		SERPINB9P1	SERPINB9P	serpin family B member 9 pseudogene 1	pseudo
10688	chr1	74197571	74198730	+	0	NA	promoter-TSS (NM_001112808)	promoter-TSS (NM_001112808)	26	NM_001322315	127255		NM_145258	ENSG00000162620	LRRIQ3	LRRC44	leucine rich repeats and IQ motif containing 3	protein-coding
164817	chr3	70960801	70961230	+	0	NA	intron (NM_001244810, intron 20 of 20)	AluYc|SINE|Alu	103909	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
36530	chr11	6484571	6484730	+	0	NA	TTS (NM_012192)	TTS (NM_012192)	3149	NM_012192	26515		NM_012192	ENSG00000132286	TIMM10B	FXC1|TIM10B|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding
212382	chr7	128030601	128031600	+	0	NA	5' UTR (NM_022143, exon 1 of 2)	5' UTR (NM_022143, exon 1 of 2)	337	NM_022143	64101		NM_022143	ENSG00000128594	LRRC4	NAG14|NGL-2	leucine rich repeat containing 4	protein-coding
106988	chr18	32031801	32032180	+	0	NA	intron (NM_017831, intron 1 of 5)	AluSx|SINE|Alu	13165	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
133080	chr2	112435521	112435800	+	0	NA	Intergenic	Intergenic	-2015	NM_001164463	727851		NM_001164463	ENSG00000169629	RGPD8	RANBP2L1|RGP8|RanBP2alpha	RANBP2 like and GRIP domain containing 8	protein-coding
209620	chr7	77702771	77703650	+	0	NA	intron (NM_198467, intron 1 of 7)	L1MEd|LINE|L1	-5865	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
86518	chr16	67151871	67152350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1112	NM_033309	84752		NM_033309	ENSG00000237172	B3GNT9	-	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding
153489	chr22	26430771	26431480	+	0	NA	intron (NM_020437, intron 1 of 3)	intron (NM_020437, intron 1 of 3)	1865	NM_020437	57168		NM_020437	ENSG00000128203	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
109126	chr18	80154201	80154680	+	0	NA	intron (NR_028340, intron 1 of 2)	intron (NR_028340, intron 1 of 2)	6516	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
22341	chr1	214427371	214428200	+	0	NA	intron (NM_005401, intron 3 of 18)	L2a|LINE|L2	123817	NM_005401	5784		NM_005401	ENSG00000152104	PTPN14	CATLPH|PEZ|PTP36|PTPD2	protein tyrosine phosphatase non-receptor type 14	protein-coding
152127	chr22	19957271	19957630	+	0	NA	intron (NM_001135162, intron 1 of 5)	intron (NM_001135162, intron 1 of 5)	-5103	NM_007310	1312		NM_000754	ENSG00000093010	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
197631	chr6	83389751	83389850	+	0	NA	intron (NM_002395, intron 3 of 13)	intron (NM_002395, intron 3 of 13)	41251	NM_002395	4199		NM_002395	ENSG00000065833	ME1	HUMNDME|MES	malic enzyme 1	protein-coding
229088	chr9	114369241	114370390	+	0	NA	intron (NM_001317952, intron 3 of 20)	(TCATCA)n|Simple_repeat|Simple_repeat	18167	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
41951	chr11	67314951	67315250	+	0	NA	Intergenic	AluSx|SINE|Alu	-2739	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
45959	chr11	121427021	121427480	+	0	NA	Intergenic	CpG	-25064	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
170560	chr3	186793001	186793980	+	0	NA	intron (NM_002916, intron 5 of 10)	L1MB8|LINE|L1	5877	NR_002588	619568		NR_002588	ENSG00000263776	SNORA4	ACA4	small nucleolar RNA, H/ACA box 4	snoRNA
96335	chr17	40050051	40050750	+	0	NA	intron (NM_014815, intron 3 of 25)	AluSx|SINE|Alu	4008	NM_014815	9862		NM_014815	ENSG00000008838	MED24	ARC100|CRSP100|CRSP4|DRIP100|MED5|THRAP4|TRAP100	mediator complex subunit 24	protein-coding
84793	chr16	31035901	31036100	+	0	NA	intron (NM_001272096, intron 6 of 11)	AluSz|SINE|Alu	2442	NM_004604	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
194880	chr6	34661851	34662150	+	0	NA	intron (NM_022758, intron 1 of 3)	AluYj4|SINE|Alu	-34154	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
28589	chr10	52308451	52308750	+	0	NA	intron (NR_038277, intron 3 of 5)	intron (NR_038277, intron 3 of 5)	5528	NR_038277	100506939		NR_038277		PRKG1-AS1	-	PRKG1 antisense RNA 1	ncRNA
215647	chr8	314301	314500	+	0	NA	Intergenic	Intergenic	68774	NR_103537	157693		NR_103537	ENSG00000182366	FAM87A	-	family with sequence similarity 87 member A	ncRNA
86382	chr16	66601071	66601800	+	0	NA	Intergenic	MER52C|LTR|ERV1	-2561	NM_144601	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
133201	chr2	113124501	113124700	+	0	NA	intron (NM_173843, intron 2 of 5)	intron (NM_173843, intron 2 of 5)	-2889	NM_001379360	3557		NM_000577	ENSG00000136689	IL1RN	CRMO2|DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4	interleukin 1 receptor antagonist	protein-coding
236825	chrX	79181921	79182180	+	0	NA	Intergenic	Intergenic	37362	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
42224	chr11	68043051	68043880	+	0	NA	exon (NM_006019, exon 6 of 20)	exon (NM_006019, exon 6 of 20)	485	NM_006053	10312		NM_006019	ENSG00000110719	TCIRG1	ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3	T cell immune regulator 1, ATPase H+ transporting V0 subunit a3	protein-coding
170689	chr3	187799801	187800630	+	0	NA	Intergenic	Intergenic	-54747	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
137420	chr2	196292171	196292700	+	0	NA	intron (NM_001348768, intron 14 of 28)	intron (NM_001348768, intron 14 of 28)	32411	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
81935	chr16	11788051	11788430	+	0	NA	intron (NM_014153, intron 1 of 22)	intron (NM_014153, intron 1 of 22)	9018	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
35338	chr11	1114171	1114330	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	39375	NM_002457	4583		NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
182874	chr5	69910201	69910630	+	0	NA	non-coding (NR_146391, exon 4 of 11).2	non-coding (NR_146391, exon 4 of 11).2	-6395	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
227803	chr9	93170671	93171030	+	0	NA	Intergenic	L1ME4b|LINE|L1	-14080	NM_001282394	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
235743	chrX	48943251	48943680	+	0	NA	intron (NM_001136157, intron 2 of 8)	L1MC5a|LINE|L1	14142	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
126894	chr2	32361601	32361800	+	0	NA	intron (NM_016252, intron 1 of 73)	L1MC1|LINE|L1	4484	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
195895	chr6	41712751	41713050	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	20710	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
72538	chr15	34331101	34331300	+	0	NA	intron (NM_133647, intron 1 of 24)	AluSz6|SINE|Alu	5644	NM_133647	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
147524	chr20	59242771	59243000	+	0	NA	intron (NM_178457, intron 4 of 5)	intron (NM_178457, intron 4 of 5)	-57726	NM_207032	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
82903	chr16	21639551	21639850	+	0	NA	3' UTR (NM_005849, exon 6 of 6).2	3' UTR (NM_005849, exon 6 of 6).2	12908	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
116529	chr19	18191021	18191280	+	0	NA	Intergenic	MER4E|LTR|ERV1	-2068	NM_032683	84769		NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial inner membrane protein like 2	protein-coding
91982	chr17	7421271	7421630	+	0	NA	exon (NM_199339, exon 3 of 3)	exon (NM_199339, exon 3 of 3)	1126	NM_199339	374768		NM_199339	ENSG00000181323	SPEM1	C17orf83	spermatid maturation 1	protein-coding
72769	chr15	39782201	39783930	+	0	NA	promoter-TSS (NM_152597)	promoter-TSS (NM_152597)	159	NR_135665	105370941		NR_135665	ENSG00000261136	LOC105370941	-	uncharacterized LOC105370941	ncRNA
25463	chr10	6645871	6646030	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	10880	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
69303	chr14	93117071	93117230	+	0	NA	Intergenic	Intergenic	-1225	NM_014216	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
24788	chr1	248924821	248926030	+	0	NA	Intergenic	Intergenic	19182	NM_001017434	267002		NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
223054	chr8	143379421	143379880	+	0	NA	intron (NM_052924, intron 8 of 14)	intron (NM_052924, intron 8 of 14)	10774	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
103500	chr17	78411421	78411800	+	0	NA	intron (NR_110601, intron 6 of 8)	intron (NR_110601, intron 6 of 8)	32961	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
213001	chr7	131002221	131002900	+	0	NA	intron (NR_109850, intron 3 of 5)	MLT1H2|LTR|ERVL-MaLR	89096	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
213334	chr7	135335621	135335880	+	0	NA	Intergenic	Intergenic	103771	NM_182489	346673		NM_182489	ENSG00000146857	STRA8	-	stimulated by retinoic acid 8	protein-coding
12067	chr1	98849921	98850330	+	0	NA	Intergenic	L1PA15|LINE|L1	-154151	NR_033940	100129620		NR_033940	ENSG00000232825	PLPPR5-AS1	-	PLPPR5 antisense RNA 1	ncRNA
122369	chr19	49359951	49360650	+	0	NA	intron (NM_001256659, intron 1 of 11)	MSR1|Satellite|Satellite	1217	NM_001256661	8463		NM_003598	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain transcription factor 2	protein-coding
30343	chr10	77638001	77638550	+	0	NA	promoter-TSS (NM_001271522)	promoter-TSS (NM_001271522)	-467	NM_001322836	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
162807	chr3	49111621	49111880	+	0	NA	exon (NM_001199161, exon 21 of 27)	exon (NM_001199161, exon 21 of 27)	-6993	NM_001272073	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
24123	chr1	235764151	235764250	+	0	NA	intron (NM_001301365, intron 21 of 52)	L2c|LINE|L2	88860	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
104048	chr17	80141701	80142250	+	0	NA	intron (NM_014740, intron 2 of 11)	intron (NM_014740, intron 2 of 11)	5153	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
193150	chr6	29634921	29635400	+	0	NA	Intergenic	AluSp|SINE|Alu	-1977	NM_001470	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
179872	chr5	607371	607530	+	0	NA	intron (NR_103444, intron 2 of 2)	intron (NR_103444, intron 2 of 2)	4760	NR_103444	100996325		NR_103444		CEP72-DT	-	CEP72 divergent transcript	ncRNA
235644	chrX	48516871	48517230	+	0	NA	intron (NM_001282167, intron 11 of 12)	intron (NM_001282167, intron 11 of 12)	-4758	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
123257	chr19	53360371	53360780	+	0	NA	Intergenic	LTR13|LTR|ERVK	-5130	NR_145447	170958		NM_001348156	ENSG00000203326	ZNF525	-	zinc finger protein 525	protein-coding
1828	chr1	6247751	6248150	+	0	NA	3' UTR (NM_207370, exon 6 of 6)	3' UTR (NM_207370, exon 6 of 6)	3771	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
57563	chr12	122223821	122224080	+	0	NA	intron (NM_001278303, intron 1 of 4)	AluJo|SINE|Alu	1821	NM_001278304	56616		NM_019887	ENSG00000184047	DIABLO	DFNA64|SMAC	diablo IAP-binding mitochondrial protein	protein-coding
124737	chr2	6864921	6866800	+	0	NA	promoter-TSS (NM_001256478)	promoter-TSS (NM_001256478)	-41	NM_207315	129607		NM_207315	ENSG00000134326	CMPK2	NDK|TMPK2|TYKi|UMP-CMPK2	cytidine/uridine monophosphate kinase 2	protein-coding
133493	chr2	119940351	119940850	+	0	NA	intron (NM_002830, intron 15 of 26)	AluJr|SINE|Alu	-72477	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
36041	chr11	2926951	2927250	+	0	NA	Intergenic	Intergenic	2320	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
87879	chr16	78135021	78135380	+	0	NA	intron (NM_130791, intron 4 of 5)	intron (NM_130791, intron 4 of 5)	35546	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
47007	chr12	219851	220180	+	0	NA	TTS (NM_001190997)	TTS (NM_001190997)	-5858	NM_001122848	6539		NM_003044	ENSG00000111181	SLC6A12	BGT-1|BGT1|GAT2	solute carrier family 6 member 12	protein-coding
85310	chr16	49484471	49484830	+	0	NA	Intergenic	Intergenic	33935	NR_144553	1596		NR_144553	ENSG00000260089	ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
224105	chr9	4595271	4595430	+	0	NA	intron (NR_148444, intron 16 of 16)	intron (NR_148444, intron 16 of 16)	66873	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
17824	chr1	159890851	159890950	+	0	NA	intron (NM_012337, intron 2 of 11)	AluSx1|SINE|Alu	9179	NR_130464	100422852		NR_130464	ENSG00000266458	MIR4259	-	microRNA 4259	ncRNA
192798	chr6	26576751	26578430	+	0	NA	Intergenic	Intergenic	8266	NR_134611	105374988		NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
165409	chr3	97883071	97883430	+	0	NA	intron (NM_153605, intron 7 of 21)	intron (NM_153605, intron 7 of 21)	61239	NM_153605	131544		NM_153605	ENSG00000080200	CRYBG3	DKFZp667G2110|vlAKAP	crystallin beta-gamma domain containing 3	protein-coding
91791	chr17	7019471	7019780	+	0	NA	promoter-TSS (NR_038310)	promoter-TSS (NR_038310)	29	NR_038310	100506755		NR_038310	ENSG00000267532	MIR497HG	MIR195HG	mir-497-195 cluster host gene	ncRNA
95799	chr17	38725231	38725730	+	0	NA	intron (NM_005937, intron 19 of 19)	intron (NM_005937, intron 19 of 19)	-4861	NM_001136498	284106		NM_001136498	ENSG00000277972	CISD3	MiNT|Miner2	CDGSH iron sulfur domain 3	protein-coding
219968	chr8	89755571	89756130	+	0	NA	intron (NR_125822, intron 1 of 4)	LTR7C|LTR|ERV1	1861	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
63483	chr13	114161501	114162330	+	0	NA	Intergenic	Intergenic	-29292	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
21986	chr1	209724151	209724480	+	0	NA	promoter-TSS (NR_134509)	promoter-TSS (NR_134509)	-190	NR_134509	101930114		NR_134509	ENSG00000227591	HSD11B1-AS1	-	HSD11B1 antisense RNA 1	ncRNA
81457	chr16	8888171	8888550	+	0	NA	Intergenic	Intergenic	-19348	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
43029	chr11	74007801	74008380	+	0	NA	intron (NM_022803, intron 1 of 5)	MIRb|SINE|MIR	995	NM_003356	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
213280	chr7	134701301	134701500	+	0	NA	Intergenic	Intergenic	54547	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
108426	chr18	69953971	69954400	+	0	NA	intron (NM_006566, intron 1 of 6)	intron (NM_006566, intron 1 of 6)	2614	NM_001303619	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
66964	chr14	65937271	65937980	+	0	NA	Intergenic	MER74A|LTR|ERVL	466523	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
130915	chr2	87473171	87474530	+	0	NA	intron (NR_024205, intron 2 of 2)	intron (NR_024205, intron 2 of 2)	3900	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
204582	chr7	5290901	5291350	+	0	NA	exon (NM_001300847, exon 4 of 11)	exon (NM_001300847, exon 4 of 11)	8182	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
234228	chrX	13005571	13006300	+	0	NA	Intergenic	Intergenic	30825	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
190836	chr6	1604301	1605380	+	0	NA	promoter-TSS (NR_125804)	promoter-TSS (NR_125804)	-691	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
216544	chr8	21787401	21788250	+	0	NA	intron (NM_001495, intron 1 of 8)	CpG	1050	NM_001165039	2675		NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
120365	chr19	43617251	43617700	+	0	NA	intron (NM_182498, intron 1 of 2)	intron (NM_182498, intron 1 of 2)	2154	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
61886	chr13	77307651	77308300	+	0	NA	intron (NM_015057, intron 1 of 82)	L2|LINE|L2	19119	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
62311	chr13	99040801	99041000	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-25115	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
190511	chr5	180498471	180498630	+	0	NA	intron (NR_163437, intron 2 of 12)	intron (NR_163437, intron 2 of 12)	4171	NR_163437	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
8298	chr1	40049121	40050080	+	0	NA	intron (NM_001350484, intron 2 of 13)	L2|LINE|L2	8574	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
191109	chr6	4020501	4022000	+	0	NA	promoter-TSS (NR_146784)	promoter-TSS (NR_146784)	-50	NM_003913	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
26864	chr10	24912201	24912490	+	0	NA	intron (NM_020200, intron 3 of 8)	L1ME1|LINE|L1	40261	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
48095	chr12	7438701	7439100	+	0	NA	intron (NM_174941, intron 2 of 19)	intron (NM_174941, intron 2 of 19)	5253	NM_174941	283316		NM_174941	ENSG00000177675	CD163L1	CD163B|M160|SCARI2|STAR|WC1	CD163 molecule like 1	protein-coding
122063	chr19	48698171	48698330	+	0	NA	intron (NM_000511, intron 1 of 1)	intron (NM_000511, intron 1 of 1)	2279	NM_001097638	2524		NM_000511	ENSG00000176920	FUT2	B12QTL1|SE|SEC2|Se2|sej	fucosyltransferase 2 (H blood group)	protein-coding
219996	chr8	89983271	89985100	+	0	NA	intron (NM_001024688, intron 1 of 16)	CpG	482	NM_002485	4683		NM_002485	ENSG00000104320	NBN	AT-V1|AT-V2|ATV|NBS|NBS1|P95	nibrin	protein-coding
44541	chr11	108027171	108027350	+	0	NA	intron (NM_003478, intron 1 of 18)	AluSz6|SINE|Alu	18362	NM_003478	8065		NM_003478	ENSG00000166266	CUL5	CUL-5|VACM-1|VACM1	cullin 5	protein-coding
41576	chr11	66334971	66335230	+	0	NA	exon (NM_001363559, exon 6 of 10)	exon (NM_001363559, exon 6 of 10)	1334	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
107112	chr18	35062621	35063200	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	21497	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
96153	chr17	39680721	39681000	+	0	NA	intron (NM_001291726, intron 2 of 6)	AluJb|SINE|Alu	7197	NM_033419	93210		NM_033419	ENSG00000161395	PGAP3	AGLA546|CAB2|PERLD1|PP1498|hCOS16	post-GPI attachment to proteins phospholipase 3	protein-coding
71877	chr15	22437401	22438000	+	0	NA	intron (NR_033350, intron 1 of 17)	intron (NR_033350, intron 1 of 17)	326	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
89911	chr16	89705771	89707430	+	0	NA	TTS (NM_004913)	TTS (NM_004913)	-4895	NM_152339	124044		NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
192766	chr6	26472451	26473100	+	0	NA	intron (NR_038992, intron 3 of 3)	LTR27C|LTR|ERV1	9734	NR_038992	285819		NR_038992		LOC285819	-	uncharacterized LOC285819	ncRNA
6938	chr1	31736451	31737380	+	0	NA	intron (NM_001294336, intron 20 of 31)	intron (NM_001294336, intron 20 of 31)	21820	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
64192	chr14	23008901	23009100	+	0	NA	intron (NM_001130706, intron 1 of 7)	intron (NM_001130706, intron 1 of 7)	1143	NM_001130708	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
42172	chr11	67847971	67848150	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-42724	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
167264	chr3	128606921	128607180	+	0	NA	Intergenic	AluY|SINE|Alu	-30964	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
162586	chr3	48682171	48682330	+	0	NA	intron (NM_016453, intron 3 of 12)	intron (NM_016453, intron 3 of 12)	3665	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
77459	chr15	84421401	84422530	+	0	NA	promoter-TSS (NR_120379)	promoter-TSS (NR_120379)	-554	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
9975	chr1	54946071	54946230	+	0	NA	Intergenic	Intergenic	-34478	NM_182532	199964		NM_182532	ENSG00000143001	TMEM61	-	transmembrane protein 61	protein-coding
202917	chr6	160100651	160100950	+	0	NA	intron (NM_000876, intron 45 of 47)	(T)n|Simple_repeat|Simple_repeat	7718	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
164305	chr3	57673601	57674000	+	0	NA	intron (NM_152678, intron 1 of 19)	AluSq2|SINE|Alu	19277	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
132919	chr2	111421601	111422200	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	73261	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
48060	chr12	7085051	7085750	+	0	NA	intron (NM_001733, intron 9 of 10)	intron (NM_001733, intron 9 of 10)	6493	NM_001354346	715		NM_001733	ENSG00000159403	C1R	EDS8|EDSPD1	complement C1r	protein-coding
68709	chr14	90658721	90658980	+	0	NA	intron (NM_001010854, intron 9 of 19)	intron (NM_001010854, intron 9 of 19)	16221	NR_110134	101928909		NR_110134	ENSG00000259163	TTC7B-AS1	-	TTC7B antisense RNA 1	ncRNA
115058	chr19	14165351	14165450	+	0	NA	intron (NM_014921, intron 4 of 22)	intron (NM_014921, intron 4 of 22)	28248	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
43197	chr11	75416171	75416780	+	0	NA	intron (NM_001256802, intron 6 of 6)	AluSx|SINE|Alu	12054	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
224564	chr9	19464521	19465350	+	0	NA	Intergenic	(GCTGCGG)n|Simple_repeat|Simple_repeat	55926	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
143391	chr20	29211921	29212380	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	131760	NR_132316	102723316		NR_132316		FRG1DP	-	FSHD region gene 1 family member D, pseudogene	pseudo
171015	chr3	194943071	194943830	+	0	NA	Intergenic	Intergenic	-151138	NR_104188	100874528		NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
66328	chr14	61426921	61427200	+	0	NA	intron (NM_006255, intron 2 of 13)	MER4D1|LTR|ERV1	105617	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
27134	chr10	28260671	28261030	+	0	NA	intron (NM_173496, intron 2 of 18)	intron (NM_173496, intron 2 of 18)	21273	NM_173496	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
18203	chr1	160884801	160885200	+	0	NA	intron (NM_017625, intron 1 of 7)	intron (NM_017625, intron 1 of 7)	180	NM_017625	55600		NM_017625	ENSG00000179914	ITLN1	HL-1|HL1|INTL|ITLN|LFR|hIntL|omentin	intelectin 1	protein-coding
119146	chr19	39382651	39382950	+	0	NA	intron (NM_001384595, intron 13 of 13)	intron (NM_001384595, intron 13 of 13)	8306	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
84244	chr16	30002651	30002950	+	0	NA	non-coding (NR_134855, exon 7 of 11)	non-coding (NR_134855, exon 7 of 11)	6559	NR_130787	283899		NM_173618	ENSG00000169592	INO80E	CCDC95	INO80 complex subunit E	protein-coding
15226	chr1	149500271	149500430	+	0	NA	intron (NM_001351365, intron 24 of 92)	intron (NM_001351365, intron 24 of 92)	24452	NM_001351365	101060226		NM_001351365	ENSG00000271383	NBPF19	-	NBPF member 19	protein-coding
125338	chr2	10814721	10815180	+	0	NA	intron (NM_001282706, intron 2 of 13)	intron (NM_001282706, intron 2 of 13)	-2111	NM_001282707	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
219640	chr8	80230501	80231230	+	0	NA	Intergenic	Intergenic	-10524	NR_049894	100847056		NR_049894	ENSG00000265588	MIR5708	-	microRNA 5708	ncRNA
114202	chr19	11425101	11425300	+	0	NA	intron (NM_001302453, intron 7 of 12)	intron (NM_001302453, intron 7 of 12)	-5886	NM_001035223	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
6340	chr1	27722471	27723030	+	0	NA	Intergenic	AluSg|SINE|Alu	-3211	NM_001143914	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
135629	chr2	168208671	168208830	+	0	NA	intron (NM_013233, intron 1 of 17)	MLT1I|LTR|ERVL-MaLR	38845	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
205627	chr7	22523921	22524180	+	0	NA	Intergenic	Intergenic	-23768	NM_207342	256227		NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
232012	chr9	133360071	133360230	+	0	NA	intron (NM_017503, intron 4 of 5)	intron (NM_017503, intron 4 of 5)	3600	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
113310	chr19	8573051	8574330	+	0	NA	intron (NM_012335, intron 1 of 27)	AluSz6|SINE|Alu	3752	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
153390	chr22	24606371	24606530	+	0	NA	intron (NM_001288833, intron 1 of 15)	L3|LINE|CR1	3257	NM_001288833	2678		NM_005265	ENSG00000100031	GGT1	CD224|D22S672|D22S732|GGT|GGT 1|GGTD|GTG	gamma-glutamyltransferase 1	protein-coding
190497	chr5	180356021	180356530	+	0	NA	Intergenic	Intergenic	-2939	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
55632	chr12	107079071	107079700	+	0	NA	intron (NM_004075, intron 1 of 12)	MLT1K|LTR|ERVL-MaLR	14164	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
174408	chr4	39363751	39364850	+	0	NA	intron (NM_001204747, intron 1 of 24)	intron (NM_001204747, intron 1 of 24)	2062	NM_002913	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
141877	chr20	753771	754130	+	0	NA	Intergenic	MER41B|LTR|ERV1	14550	NM_033409	113278		NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
14833	chr1	146319221	146319480	+	0	NA	Intergenic	Intergenic	21359	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
101559	chr17	68033501	68033700	+	0	NA	Intergenic	MIR|SINE|MIR	-2135	NM_002266	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
178085	chr4	140152911	140153300	+	0	NA	exon (NM_018717, exon 1 of 5)	exon (NM_018717, exon 1 of 5)	1079	NM_018717	55534		NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3	mastermind like transcriptional coactivator 3	protein-coding
231557	chr9	131485771	131486280	+	0	NA	TTS (NR_002914)	TTS (NR_002914)	360	NR_002914	26786		NR_002914	ENSG00000235284	SNORD62A	RNU62|U62|U62A	small nucleolar RNA, C/D box 62A	snoRNA
143897	chr20	32578901	32579850	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	5958	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
120957	chr19	45700751	45701350	+	0	NA	intron (NM_017659, intron 5 of 6)	AluJb|SINE|Alu	8384	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
56580	chr12	117191771	117191930	+	0	NA	Intergenic	Intergenic	-1380	NM_033624	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
75667	chr15	67762971	67763330	+	0	NA	intron (NM_145160, intron 19 of 21)	intron (NM_145160, intron 19 of 21)	-62359	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
55415	chr12	104484221	104484480	+	0	NA	intron (NM_018413, intron 1 of 2)	MER103C|DNA|hAT-Charlie	27402	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
151845	chr22	18535171	18535530	+	0	NA	intron (NR_003563, intron 13 of 14)	intron (NR_003563, intron 13 of 14)	7548	NM_001242313	728229		NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
172637	chr4	2538971	2539800	+	0	NA	intron (NM_001366318, intron 1 of 20)	intron (NM_001366318, intron 1 of 20)	2738	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
151370	chr21	45881351	45881450	+	0	NA	intron (NM_001382276, intron 6 of 18)	AluJr|SINE|Alu	33250	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
6094	chr1	27289001	27289200	+	0	NA	intron (NM_015023, intron 6 of 15)	SVA_D|Retroposon|SVA	-33045	NM_032125	84065		NM_032125	ENSG00000186501	TMEM222	C1orf160|NEDMOSBA	transmembrane protein 222	protein-coding
164667	chr3	66990051	66990550	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-8007	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
45453	chr11	118470071	118470230	+	0	NA	intron (NM_001197104, intron 2 of 35)	intron (NM_001197104, intron 2 of 35)	33658	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
120607	chr19	45027801	45028450	+	0	NA	intron (NM_006509, intron 6 of 10)	AluJr|SINE|Alu	-10920	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
198261	chr6	99522751	99522850	+	0	NA	intron (NM_001195131, intron 1 of 3)	L2c|LINE|L2	1751	NM_001195131	100130890		NM_001195131	ENSG00000279170	TSTD3	-	thiosulfate sulfurtransferase like domain containing 3	protein-coding
141371	chr2	240692251	240692750	+	0	NA	exon (NM_198998, exon 2 of 4)	exon (NM_198998, exon 2 of 4)	634	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
169416	chr3	161219521	161219930	+	0	NA	Intergenic	L2c|LINE|L2	-1565	NM_001320227	51068		NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
93672	chr17	19234971	19235280	+	0	NA	Intergenic	AluSg|SINE|Alu	-2252	NM_014964	22905		NM_014964	ENSG00000072134	EPN2	EHB21	epsin 2	protein-coding
157874	chr22	49668251	49668750	+	0	NA	Intergenic	Intergenic	-10981	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
181727	chr5	50685901	50686750	+	0	NA	intron (NM_024615, intron 2 of 25)	THE1B-int|LTR|ERVL-MaLR	18911	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
192330	chr6	22147251	22147550	+	0	NA	promoter-TSS (NR_034143)	promoter-TSS (NR_034143)	-207	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
133215	chr2	113176101	113177300	+	0	NA	intron (NM_012455, intron 1 of 16)	intron (NM_012455, intron 1 of 16)	2729	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
207960	chr7	55073951	55074450	+	0	NA	intron (NM_001346941, intron 1 of 21)	intron (NM_001346941, intron 1 of 21)	-35639	NM_001346900	1956		NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|ERRP|HER1|NISBD2|PIG61|mENA	epidermal growth factor receptor	protein-coding
206275	chr7	29825851	29826150	+	0	NA	intron (NM_001080529, intron 1 of 8)	intron (NM_001080529, intron 1 of 8)	19446	NM_001080529	644150		NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family member 3	protein-coding
43399	chr11	77142071	77142830	+	0	NA	intron (NM_001369365, intron 3 of 49)	MIRb|SINE|MIR	14204	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
210980	chr7	101848121	101848700	+	0	NA	intron (NM_181552, intron 1 of 23)	intron (NM_181552, intron 1 of 23)	30784	NM_181552	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
78196	chr15	90571221	90571930	+	0	NA	intron (NM_001042574, intron 2 of 14)	L2b|LINE|L2	41652	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
34842	chr11	313101	313400	+	0	NA	promoter-TSS (NM_003641)	promoter-TSS (NM_003641)	-790	NM_003641	8519		NM_003641	ENSG00000185885	IFITM1	9-27|CD225|DSPA2a|IFI17|LEU13	interferon induced transmembrane protein 1	protein-coding
92697	chr17	14067821	14068130	+	0	NA	intron (NR_049718, intron 1 of 2)	L1PA5|LINE|L1	1483	NR_049718	100874058		NR_049718	ENSG00000236088	COX10-DT	COX10-AS|COX10-AS1|COX10AS	COX10 divergent transcript	ncRNA
222101	chr8	130749521	130749850	+	0	NA	Intergenic	L2a|LINE|L2	291224	NM_001115	114		NM_001115	ENSG00000155897	ADCY8	AC8|ADCY3|HBAC1	adenylate cyclase 8	protein-coding
208102	chr7	56813771	56814380	+	0	NA	Intergenic	Intergenic	-1339	NR_130727	401357		NR_130727		LOC401357	-	uncharacterized LOC401357	ncRNA
212154	chr7	116828451	116828550	+	0	NA	Intergenic	AluSx|SINE|Alu	-34087	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
183538	chr5	80082651	80083200	+	0	NA	intron (NM_003248, intron 21 of 21)	intron (NM_003248, intron 21 of 21)	740	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
25070	chr10	3814171	3814330	+	0	NA	Intergenic	MIRb|SINE|MIR	-19700	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
16287	chr1	154162101	154162730	+	0	NA	3' UTR (NM_152263, exon 10 of 10)	3' UTR (NM_152263, exon 10 of 10)	-7299	NM_001159484	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
162978	chr3	49705051	49705350	+	0	NA	intron (NR_135218, intron 23 of 38)	intron (NR_135218, intron 23 of 38)	14484	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
6404	chr1	27962621	27962950	+	0	NA	intron (NM_018053, intron 1 of 2)	AluJr4|SINE|Alu	2812	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
98299	chr17	46234751	46235050	+	0	NA	Intergenic	AluSp|SINE|Alu	-9533	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
146254	chr20	48919751	48920380	+	0	NA	Intergenic	L2c|LINE|L2	-1646	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
188629	chr5	157214801	157215880	+	0	NA	intron (NM_005546, intron 4 of 16)	intron (NM_005546, intron 4 of 16)	34500	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
32578	chr10	103458651	103459150	+	0	NA	promoter-TSS (NM_001001412)	promoter-TSS (NM_001001412)	0	NM_001001412	255022		NM_001001412	ENSG00000185933	CALHM1	FAM26C	calcium homeostasis modulator 1	protein-coding
106451	chr18	13680671	13680830	+	0	NA	intron (NM_001098801, intron 3 of 4)	intron (NM_001098801, intron 3 of 4)	38992	NM_001276251	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
23676	chr1	231357771	231358350	+	0	NA	Intergenic	Intergenic	19767	NM_032018	83932		NM_032018	ENSG00000010072	SPRTN	C1orf124|DVC1|PRO4323|spartan	SprT-like N-terminal domain	protein-coding
117259	chr19	19451121	19453750	+	0	NA	intron (NM_001384516, intron 2 of 12)	intron (NM_001384516, intron 2 of 12)	17372	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
1578	chr1	3591571	3591730	+	0	NA	intron (NM_001409, intron 3 of 36)	intron (NM_001409, intron 3 of 36)	19858	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
167786	chr3	133444171	133444330	+	0	NA	intron (NR_135276, intron 4 of 4)	intron (NR_135276, intron 4 of 4)	11526	NR_135278	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
195722	chr6	39137301	39137550	+	0	NA	Intergenic	Intergenic	-22239	NM_001304793	55776		NM_018322	ENSG00000112167	SAYSD1	C6orf64	SAYSVFN motif domain containing 1	protein-coding
9927	chr1	54474251	54476650	+	0	NA	Intergenic	MIR3|SINE|MIR	-69056	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
3990	chr1	18912871	18914300	+	0	NA	intron (NM_001136265, intron 5 of 8)	intron (NM_001136265, intron 5 of 8)	-10786	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
214832	chr7	151253201	151253600	+	0	NA	intron (NM_001003802, intron 2 of 13)	intron (NM_001003802, intron 2 of 13)	-4706	NM_001003801	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
143436	chr20	30283321	30284780	+	0	NA	intron (NR_145432, intron 1 of 1)	SST1|Satellite|centr	2487	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
197566	chr6	79672801	79673500	+	0	NA	intron (NM_031469, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	41821	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
192284	chr6	20467521	20467780	+	0	NA	intron (NM_001243076, intron 1 of 6)	MER21-int|LTR|ERVL	63971	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
27515	chr10	32299921	32300700	+	0	NA	intron (NR_168511, intron 2 of 13)	L1PA5|LINE|L1	46848	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
173554	chr4	10088851	10088950	+	0	NA	intron (NM_005112, intron 2 of 11)	intron (NM_005112, intron 2 of 11)	-10208	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
194519	chr6	33297721	33298500	+	0	NA	intron (NM_001243738, intron 1 of 16)	intron (NM_001243738, intron 1 of 16)	832	NM_004761	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
75378	chr15	65685101	65685300	+	0	NA	intron (NM_001376919, intron 22 of 31)	AluYk2|SINE|Alu	11736	NR_145750	109617020		NR_145750	ENSG00000238311	SNORD13E	-	small nucleolar RNA, C/D box 13E	snoRNA
174064	chr4	26916101	26916630	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	55524	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
221515	chr8	124639371	124639730	+	0	NA	intron (NM_001363300, intron 3 of 12)	AluSz6|SINE|Alu	88923	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
125790	chr2	23918551	23918850	+	0	NA	intron (NM_001354107, intron 1 of 28)	intron (NM_001354107, intron 1 of 28)	8423	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
162034	chr3	46691251	46691550	+	0	NA	intron (NM_147129, intron 1 of 25)	intron (NM_147129, intron 1 of 25)	2279	NM_147129	259173		NM_147129	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
29002	chr10	63391901	63392480	+	0	NA	intron (NM_001322258, intron 1 of 24)	L1M2|LINE|L1	-19142	NR_031566	100302150		NR_031566	ENSG00000221063	MIR1296	MIRN1296|hsa-mir-1296|mir-1296	microRNA 1296	ncRNA
207648	chr7	45061701	45061900	+	0	NA	intron (NM_001363458, intron 2 of 10)	L1MCa|LINE|L1	27169	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
78358	chr15	91315971	91316530	+	0	NA	Intergenic	Intergenic	-147089	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
238862	chrX	154514371	154514530	+	0	NA	intron (NM_021806, intron 1 of 8)	AluY|SINE|Alu	1782	NM_001171133	60343		NM_021806	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	FAM3 metabolism regulating signaling molecule A	protein-coding
46854	chr11	133917021	133917480	+	0	NA	intron (NM_001277285, intron 18 of 19)	intron (NM_001277285, intron 18 of 19)	-18669	NR_039846	100616119		NR_039846	ENSG00000284020	MIR4697	-	microRNA 4697	ncRNA
162301	chr3	47415151	47415530	+	0	NA	intron (NM_001320044, intron 15 of 19)	intron (NM_001320044, intron 15 of 19)	34319	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
66098	chr14	59507371	59507680	+	0	NA	intron (NM_001164399, intron 19 of 19)	intron (NM_001164399, intron 19 of 19)	23008	NM_016475	51528		NM_016475	ENSG00000050130	JKAMP	C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP	JNK1/MAPK8 associated membrane protein	protein-coding
142623	chr20	5609521	5610200	+	0	NA	intron (NM_019593, intron 1 of 19)	intron (NM_019593, intron 1 of 19)	1146	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
154258	chr22	31619501	31620530	+	0	NA	intron (NM_001326421, intron 6 of 6)	intron (NM_001326421, intron 6 of 6)	1516	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
31014	chr10	88792871	88793030	+	0	NA	Intergenic	Intergenic	-9780	NM_001128215	340654		NM_001128215	ENSG00000173239	LIPM	LIPL3|bA304I5.1	lipase family member M	protein-coding
131473	chr2	96461301	96461500	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	43957	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
127233	chr2	38663561	38664300	+	0	NA	Intergenic	Intergenic	-2184	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
59439	chr13	25874021	25874280	+	0	NA	intron (NM_016529, intron 33 of 36)	L2b|LINE|L2	177866	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
228585	chr9	104909551	104909850	+	0	NA	intron (NM_005502, intron 1 of 49)	intron (NM_005502, intron 1 of 49)	18455	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
233385	chr9	137533751	137534150	+	0	NA	intron (NM_001098537, intron 8 of 34)	intron (NM_001098537, intron 8 of 34)	16452	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
86638	chr16	67441401	67441600	+	0	NA	intron (NM_004691, intron 4 of 7)	intron (NM_004691, intron 4 of 7)	10379	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
119179	chr19	39420981	39421430	+	0	NA	intron (NM_022835, intron 15 of 18)	intron (NM_022835, intron 15 of 18)	7426	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
208474	chr7	67000501	67001300	+	0	NA	intron (NM_018264, intron 3 of 15)	intron (NM_018264, intron 3 of 15)	4067	NM_018264	55253		NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog	protein-coding
93225	chr17	17838071	17839050	+	0	NA	Intergenic	Intergenic	-1549	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
67442	chr14	70660471	70660630	+	0	NA	intron (NM_015351, intron 1 of 2)	MIRb|SINE|MIR	18634	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
125461	chr2	12264321	12264580	+	0	NA	intron (NR_110196, intron 3 of 5)	MSTA-int|LTR|ERVL-MaLR	65320	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
139448	chr2	223839101	223839300	+	0	NA	Intergenic	L2a|LINE|L2	-1618	NR_110905	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
28050	chr10	43261271	43261650	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	5605	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
111421	chr19	3781971	3782400	+	0	NA	intron (NM_139355, intron 7 of 13)	intron (NM_139355, intron 7 of 13)	4196	NM_139355	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
155002	chr22	37318701	37318900	+	0	NA	Intergenic	Intergenic	36039	NR_110515	100506271		NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA
153738	chr22	29310451	29310550	+	0	NA	exon (NM_001278730, exon 3 of 6)	exon (NM_001278730, exon 3 of 6)	3477	NM_006478	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
197598	chr6	80454001	80454600	+	0	NA	Intergenic	Intergenic	347629	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
142724	chr20	9617021	9617300	+	0	NA	intron (NM_177990, intron 3 of 9)	intron (NM_177990, intron 3 of 9)	-102162	NR_109957	101929329		NR_109957	ENSG00000225988	LAMP5-AS1	-	LAMP5 antisense RNA 1	ncRNA
99006	chr17	48791671	48792080	+	0	NA	intron (NM_001366314, intron 8 of 13)	intron (NM_001366314, intron 8 of 13)	2449	NM_173623	284076		NM_173623	ENSG00000170703	TTLL6	TTL.6	tubulin tyrosine ligase like 6	protein-coding
145913	chr20	45987301	45987900	+	0	NA	Intergenic	Intergenic	-15397	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
87661	chr16	74594571	74594730	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	12464	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
148455	chr20	64011271	64013630	+	0	NA	intron (NM_012469, intron 11 of 20)	intron (NM_012469, intron 11 of 20)	-21277	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
141658	chr2	241766501	241766950	+	0	NA	intron (NM_001352824, intron 9 of 9)	intron (NM_001352824, intron 9 of 9)	-10097	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
48473	chr12	9768751	9769250	+	0	NA	Intergenic	Intergenic	-8099	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
137856	chr2	200820371	200821050	+	0	NA	intron (NM_001207068, intron 10 of 11)	intron (NM_001207068, intron 10 of 11)	8324	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
223440	chr8	143969471	143970400	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	3594	NM_201378	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
36610	chr11	6747971	6748130	+	0	NA	Intergenic	Intergenic	20907	NM_001004490	338755		NM_001004490	ENSG00000188124	OR2AG2	OR11-76|OR2AG2P	olfactory receptor family 2 subfamily AG member 2	protein-coding
121883	chr19	48334951	48335050	+	0	NA	intron (NM_001303538, intron 5 of 6)	intron (NM_001303538, intron 5 of 6)	9001	NM_001313905	2014		NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3 (MAM blood group)	protein-coding
48325	chr12	9032701	9032900	+	0	NA	Intergenic	LTR8B|LTR|ERV1	32270	NR_034140	253128		NM_182550	ENSG00000214851	LINC00612	C12orf33	long intergenic non-protein coding RNA 612	ncRNA
145282	chr20	41011451	41012100	+	0	NA	intron (NR_145525, intron 2 of 2)	intron (NR_145525, intron 2 of 2)	-17047	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
151527	chr21	46460721	46461330	+	0	NA	intron (NM_206891, intron 1 of 19)	AluJr|SINE|Alu	-1446	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
31837	chr10	99619851	99621950	+	0	NA	promoter-TSS (NM_031212)	promoter-TSS (NM_031212)	-461	NM_031212	81894		NM_031212	ENSG00000155287	SLC25A28	MFRN2|MRS3/4|MRS4L|NPD016	solute carrier family 25 member 28	protein-coding
15703	chr1	151001921	151002580	+	0	NA	exon (NM_001376664, exon 2 of 10)	exon (NM_001376664, exon 2 of 10)	4652	NM_001040217	55793		NM_018379	ENSG00000143409	MINDY1	FAM63A|MINDY-1	MINDY lysine 48 deubiquitinase 1	protein-coding
128813	chr2	62725171	62725530	+	0	NA	intron (NM_001142616, intron 2 of 22)	L1PA13|LINE|L1	18453	NM_001354217	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
186348	chr5	134784571	134784800	+	0	NA	intron (NR_125341, intron 9 of 22)	intron (NR_125341, intron 9 of 22)	25906	NM_001300860	9879		NM_014829	ENSG00000145833	DDX46	PRPF5|Prp5	DEAD-box helicase 46	protein-coding
209745	chr7	87197271	87198030	+	0	NA	intron (NR_138030, intron 3 of 3)	intron (NR_138030, intron 3 of 3)	22082	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
14180	chr1	121517601	121518000	+	0	NA	Intergenic	Intergenic	-1312	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
141908	chr20	956271	956790	+	0	NA	Intergenic	Intergenic	-40196	NM_015985	51378		NM_015985	ENSG00000101280	ANGPT4	ANG3|ANG4	angiopoietin 4	protein-coding
18726	chr1	167465051	167465700	+	0	NA	intron (NM_198053, intron 1 of 7)	AluSx1|SINE|Alu	53154	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
386	chr1	1045821	1046550	+	0	NA	exon (NM_001364727, exon 16 of 36)	exon (NM_001364727, exon 16 of 36)	12192	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
61201	chr13	49421501	49421780	+	0	NA	intron (NM_001287337, intron 3 of 11)	L1MDa|LINE|L1	-7889	NM_001287339	81617		NM_030925	ENSG00000102547	CAB39L	MLAA-34|MO25-BETA|MO2L|bA103J18.3	calcium binding protein 39 like	protein-coding
65209	chr14	49766021	49766280	+	0	NA	Intergenic	Intergenic	-2003	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
39983	chr11	62615351	62616000	+	0	NA	TTS (NM_000327)	TTS (NM_000327)	2418	NM_000327	6094		NM_000327	ENSG00000149489	ROM1	ROM|ROSP1|RP7|TSPAN23	retinal outer segment membrane protein 1	protein-coding
10332	chr1	64907521	64908200	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	58689	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
180453	chr5	10633571	10634500	+	0	NA	intron (NM_001164440, intron 2 of 3)	L1MC3|LINE|L1	69965	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
2084	chr1	7950521	7950980	+	0	NA	Intergenic	L2a|LINE|L2	-9911	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
79740	chr16	1336971	1337730	+	0	NA	intron (NM_001199096, intron 1 of 32)	AluSx1|SINE|Alu	1153	NM_001199096	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
113163	chr19	8367271	8367630	+	0	NA	intron (NM_001039667, intron 3 of 5)	intron (NM_001039667, intron 3 of 5)	3295	NM_139314	51129		NM_016109	ENSG00000167772	ANGPTL4	ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158	angiopoietin like 4	protein-coding
7543	chr1	34930451	34930550	+	0	NA	promoter-TSS (NM_001080418)	promoter-TSS (NM_001080418)	-850	NM_001080418	58512		NM_001080418	ENSG00000116544	DLGAP3	DAP3|SAPAP3|SPAPA3	DLG associated protein 3	protein-coding
119222	chr19	39460971	39461130	+	0	NA	intron (NM_001111020, intron 10 of 29)	AluSg|SINE|Alu	-7172	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
30384	chr10	78043401	78043600	+	0	NA	intron (NM_001142285, intron 4 of 4)	intron (NM_001142285, intron 4 of 4)	9637	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
118932	chr19	38744151	38744680	+	0	NA	promoter-TSS (NM_144691)	promoter-TSS (NM_144691)	59	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
175676	chr4	76989231	76990880	+	0	NA	intron (NM_001306147, intron 2 of 11)	LTR12F|LTR|ERV1	40303	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
26	chr1	91121	91500	+	0	NA	Intergenic	Intergenic	22219	NM_001005484	79501		NM_001005484	ENSG00000186092	OR4F5	-	olfactory receptor family 4 subfamily F member 5	protein-coding
38692	chr11	46591751	46592050	+	0	NA	promoter-TSS (NM_001367468)	promoter-TSS (NM_001367468)	-536	NM_017749	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
217515	chr8	29226651	29227150	+	0	NA	intron (NM_015254, intron 2 of 39)	intron (NM_015254, intron 2 of 39)	36170	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
124312	chr19	58033801	58034430	+	0	NA	promoter-TSS (NM_182572)	promoter-TSS (NM_182572)	90	NM_182572	284312		NM_182572	ENSG00000152467	ZSCAN1	MZF-1|ZNF915	zinc finger and SCAN domain containing 1	protein-coding
8420	chr1	40450801	40451700	+	0	NA	intron (NM_001369565, intron 2 of 5)	intron (NM_001369565, intron 2 of 5)	774	NM_023070	65243		NM_023070	ENSG00000187801	ZFP69B	ZKSCAN23B|ZNF643|ZSCAN54B	ZFP69 zinc finger protein B	protein-coding
149863	chr21	35274771	35275130	+	0	NA	Intergenic	L2a|LINE|L2	-225648	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
17978	chr1	160480521	160481400	+	0	NA	Intergenic	L1PA3|LINE|L1	42295	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
193107	chr6	28936851	28937350	+	0	NA	Intergenic	L1ME3|LINE|L1	-6684	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
123200	chr19	52637471	52638880	+	0	NA	intron (NM_001348016, intron 1 of 3)	CpG	216	NM_001348016	55769		NM_018300	ENSG00000167766	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
63444	chr13	114113451	114114300	+	0	NA	intron (NM_001320821, intron 1 of 25).2	CpG	18748	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
127421	chr2	42129121	42129830	+	0	NA	Intergenic	Intergenic	-39878	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
102634	chr17	76021301	76022300	+	0	NA	intron (NM_001320747, intron 7 of 21)	CpG-11681	5506	NM_001320747	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
162850	chr3	49336221	49336480	+	0	NA	intron (NM_199443, intron 1 of 20)	AluSq|SINE|Alu	3703	NM_003363	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
179428	chr4	184309951	184310750	+	0	NA	Intergenic	Intergenic	43627	NR_040108	728175		NR_040108	ENSG00000180712	LINC02363	-	long intergenic non-protein coding RNA 2363	ncRNA
114185	chr19	11400271	11400430	+	0	NA	intron (NM_001161616, intron 13 of 18)	intron (NM_001161616, intron 13 of 18)	-16036	NR_033663	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
111233	chr19	3512401	3512830	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	6304	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
58156	chr12	124938701	124940200	+	0	NA	Intergenic	Intergenic	23903	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
16549	chr1	154963221	154963680	+	0	NA	TTS (NM_001321726)	TTS (NM_001321726)	-1668	NM_138300	90780		NM_138300	ENSG00000163348	PYGO2	1190004M21Rik	pygopus family PHD finger 2	protein-coding
8883	chr1	43652071	43652730	+	0	NA	intron (NM_014663, intron 1 of 21)	intron (NM_014663, intron 1 of 21)	2251	NM_014663	9682		NM_014663	ENSG00000066135	KDM4A	JHDM3A|JMJD2|JMJD2A|TDRD14A	lysine demethylase 4A	protein-coding
71678	chr15	20002751	20002850	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-279944	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
65925	chr14	55333651	55334680	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	62011	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
103557	chr17	78671801	78672430	+	0	NA	Intergenic	L1MB7|LINE|L1	-40058	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
146817	chr20	51385751	51386240	+	0	NA	TTS (NM_001258296)	TTS (NM_001258296)	66982	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
228359	chr9	99057791	99058630	+	0	NA	intron (NM_001855, intron 35 of 41)	MLT1O|LTR|ERVL-MaLR	-46903	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233559	chrX	275901	277400	+	0	NA	intron (NM_001370371, intron 1 of 6)	CpG	294	NM_001370371	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
71367	chr14	105490501	105493200	+	0	NA	intron (NM_001134876, intron 2 of 6)	CpG-7819	601	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
143879	chr20	32566501	32566980	+	0	NA	intron (NM_001256798, intron 1 of 10)	L2a|LINE|L2	18593	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
40535	chr11	64302551	64302650	+	0	NA	intron (NR_133662, intron 8 of 10)	AluSg|SINE|Alu	2242	NM_001039496	25858		NM_001039496	ENSG00000219435	CATSPERZ	C11orf20|TEX40	catsper channel auxiliary subunit zeta	protein-coding
194471	chr6	33206521	33206800	+	0	NA	3' UTR (NM_014234, exon 9 of 9).2	3' UTR (NM_014234, exon 9 of 9).2	-1175	NR_029633	407002		NR_029633	ENSG00000199036	MIR219A1	MIR219-1|MIRN219-1|MRI219-1|hsa-mir-219a-1|mir-219|mir-219a-1	microRNA 219a-1	ncRNA
189160	chr5	171393921	171394380	+	0	NA	intron (NM_002520, intron 6 of 10)	AluSg|SINE|Alu	6301	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
218039	chr8	38793071	38793680	+	0	NA	intron (NR_148050, intron 2 of 4)	MER58B|DNA|hAT-Charlie	5269	NM_001352798	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
100863	chr17	64264771	64265150	+	0	NA	Intergenic	Intergenic	-1700	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
239208	chrY	12922551	12923630	+	0	NA	Intergenic	LTR1A1|LTR|ERV1	17385	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
117883	chr19	32674451	32677030	+	0	NA	promoter-TSS (NM_032139)	promoter-TSS (NM_032139)	-108	NM_207391	388531		NM_207391	ENSG00000186326	RGS9BP	PERRS|PERRS2|R9AP|RGS9	regulator of G protein signaling 9 binding protein	protein-coding
169325	chr3	159828651	159828830	+	0	NA	intron (NM_014575, intron 2 of 7)	intron (NM_014575, intron 2 of 7)	-11121	NM_001197109	29970		NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
33279	chr10	114539501	114539700	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	-12687	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
176075	chr4	82842671	82842830	+	0	NA	intron (NM_001318120, intron 23 of 28)	intron (NM_001318120, intron 23 of 28)	-43893	NM_024906	79966		NM_024906	ENSG00000145284	SCD5	ACOD4|DFNA79|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
17741	chr1	158978471	158979200	+	0	NA	Intergenic	Intergenic	-21141	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
234363	chrX	15740151	15740450	+	0	NA	intron (NM_007220, intron 1 of 7)	intron (NM_007220, intron 1 of 7)	2030	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
4956	chr1	23978751	23979080	+	0	NA	intron (NM_001191007, intron 1 of 5)	intron (NM_001191007, intron 1 of 5)	1412	NM_001191009	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
15135	chr1	148758551	148758650	+	0	NA	Intergenic	Intergenic	9826	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
97927	chr17	45153051	45154250	+	0	NA	Intergenic	AluJb|SINE|Alu	5175	NM_006460	10614		NM_006460	ENSG00000186834	HEXIM1	CLP1|EDG1|HIS1|MAQ1	HEXIM P-TEFb complex subunit 1	protein-coding
26374	chr10	16646551	16646850	+	0	NA	intron (NM_012425, intron 8 of 8)	intron (NM_012425, intron 8 of 8)	-124821	NM_001010908	389941		NM_001010908	ENSG00000165985	C1QL3	C1QTNF13|C1ql|CTRP13|K100	complement C1q like 3	protein-coding
136295	chr2	174776171	174776800	+	0	NA	Intergenic	Intergenic	-12013	NM_000079	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
18522	chr1	161832121	161832950	+	0	NA	intron (NM_007348, intron 9 of 15)	L1P1|LINE|L1	66215	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
102733	chr17	76234071	76234830	+	0	NA	intron (NM_052916, intron 1 of 18)	L1MB7|LINE|L1	6043	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
43691	chr11	85854371	85855680	+	0	NA	promoter-TSS (NM_001286159)	promoter-TSS (NM_001286159)	-358	NM_173556	220047		NM_173556	ENSG00000150676	CCDC83	CT148|HSD9|KP-CoT-23	coiled-coil domain containing 83	protein-coding
123081	chr19	51390401	51390980	+	0	NA	promoter-TSS (NM_001193623)	promoter-TSS (NM_001193623)	-99	NR_126530	147646		NM_001193623	ENSG00000262874	C19orf84	-	chromosome 19 open reading frame 84	protein-coding
93909	chr17	21277271	21277430	+	0	NA	Intergenic	HAL1|LINE|L1	-7361	NM_145109	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
218333	chr8	42840821	42841580	+	0	NA	intron (NM_018105, intron 1 of 2)	intron (NM_018105, intron 1 of 2)	2125	NM_018105	55145		NM_018105	ENSG00000131931	THAP1	DYT6	THAP domain containing 1	protein-coding
130103	chr2	74523151	74523450	+	0	NA	intron (NM_133637, intron 5 of 11)	intron (NM_133637, intron 5 of 11)	2931	NM_133637	165545		NM_133637	ENSG00000144045	DQX1	-	DEAQ-box RNA dependent ATPase 1	protein-coding
42636	chr11	72245051	72245630	+	0	NA	Intergenic	Intergenic	-1164	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
87369	chr16	70425901	70426100	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	13100	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
224282	chr9	6418701	6419330	+	0	NA	intron (NR_046386, intron 1 of 16)	MLT1B|LTR|ERVL-MaLR	5816	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
132780	chr2	109894901	109895680	+	0	NA	Intergenic	Intergenic	-3142	NR_027145	100271835		NR_027144	ENSG00000284337	LIMS3-LOC440895	-	LIMS3-LOC440895 readthrough	ncRNA
219947	chr8	89237951	89238250	+	0	NA	Intergenic	LTR30|LTR|ERV1	519611	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
231500	chr9	131397921	131399300	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	4524	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
224913	chr9	32555571	32555930	+	0	NA	intron (NM_182739, intron 2 of 2)	MLT1J2-int|LTR|ERVL-MaLR	-3122	NM_001195622	10210		NM_005802	ENSG00000197579	TOPORS	LUN|P53BP3|RP31|TP53BPL	TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase	protein-coding
228053	chr9	96025751	96025850	+	0	NA	intron (NM_001375291, intron 18 of 18)	intron (NM_001375291, intron 18 of 18)	-3989	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
186955	chr5	139660101	139660300	+	0	NA	intron (NM_001317207, intron 1 of 2)	intron (NM_001317207, intron 1 of 2)	645	NM_001317206	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
36457	chr11	5700301	5700730	+	0	NA	intron (NM_006074, intron 4 of 7)	L1MCa|LINE|L1	10725	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
168159	chr3	139345071	139345330	+	0	NA	intron (NM_001363857, intron 1 of 7)	L2b|LINE|L2	649	NM_001363857	56945		NM_020191	ENSG00000175110	MRPS22	C3orf5|COXPD5|GIBT|GK002|MRP-S22|ODG7|RPMS22|mS22	mitochondrial ribosomal protein S22	protein-coding
84283	chr16	30073651	30074030	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2154	NM_001303503	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
205920	chr7	25656251	25656580	+	0	NA	non-coding (NR_157827, exon 3 of 3)	non-coding (NR_157827, exon 3 of 3)	6725	NR_157819	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
97715	chr17	44349551	44350100	+	0	NA	intron (NM_002087, intron 4 of 12)	intron (NM_002087, intron 4 of 12)	4523	NM_002087	2896		NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin precursor	protein-coding
84076	chr16	29602571	29602730	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	-3385	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
74509	chr15	60366001	60366200	+	0	NA	intron (NM_001002857, intron 4 of 13)	SVA_E|Retroposon|SVA	31886	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
81041	chr16	4309471	4310330	+	0	NA	Intergenic	Intergenic	-4861	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
97674	chr17	44246321	44247750	+	0	NA	Intergenic	Intergenic	21100	NM_000342	6521		NM_000342	ENSG00000004939	SLC4A1	AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR	solute carrier family 4 member 1 (Diego blood group)	protein-coding
85049	chr16	31882351	31882650	+	0	NA	intron (NM_001265588, intron 2 of 4)	MER5A1|DNA|hAT-Charlie	8693	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
237016	chrX	102593551	102593650	+	0	NA	Intergenic	Intergenic	-5606	NM_001168485	64860		NM_022838	ENSG00000125962	ARMCX5	GASP5	armadillo repeat containing X-linked 5	protein-coding
104067	chr17	80207971	80208330	+	0	NA	exon (NM_024110, exon 21 of 21)	exon (NM_024110, exon 21 of 21)	12183	NM_001352921	6448		NM_000199	ENSG00000181523	SGSH	HSS|MPS3A|SFMD	N-sulfoglucosamine sulfohydrolase	protein-coding
229125	chr9	114452401	114453050	+	0	NA	intron (NM_015404, intron 3 of 11)	intron (NM_015404, intron 3 of 11)	-26557	NM_001346890	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
156163	chr22	40210751	40211100	+	0	NA	intron (NM_015088, intron 1 of 20)	MER20|DNA|hAT-Charlie	33000	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
234069	chrX	8169321	8169600	+	0	NA	TTS (NM_016378)	TTS (NM_016378)	1807	NM_016378	51480		NM_016378	ENSG00000177504	VCX2	VCX-2r|VCX2R|VCXB	variable charge X-linked 2	protein-coding
29194	chr10	68975721	68976900	+	0	NA	intron (NM_004728, intron 11 of 14)	AluY|SINE|Alu	-12493	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
186605	chr5	138518021	138518650	+	0	NA	intron (NM_001291974, intron 3 of 10)	AluSz|SINE|Alu	23376	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
190446	chr5	179858071	179859680	+	0	NA	promoter-TSS (NR_134283)	promoter-TSS (NR_134283)	-58	NM_001017987	51149		NM_016175	ENSG00000161010	MRNIP	C5orf45	MRN complex interacting protein	protein-coding
90813	chr17	2261051	2261150	+	0	NA	intron (NM_017575, intron 8 of 18)	AluY|SINE|Alu	5085	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
19119	chr1	171504701	171505150	+	0	NA	intron (NM_015172, intron 1 of 33)	L1M4|LINE|L1	19395	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
186861	chr5	139476451	139476750	+	0	NA	intron (NM_001301738, intron 6 of 6)	MIR3|SINE|MIR	5596	NM_001365197	111064649		NM_001365197	ENSG00000283288	SMIM33	-	small integral membrane protein 33	protein-coding
6621	chr1	28890321	28890980	+	0	NA	intron (NM_001376022, intron 1 of 20)	MIRb|SINE|MIR	3550	NM_001376023	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
41434	chr11	66069201	66072650	+	0	NA	intron (NM_018026, intron 1 of 23)	CpG	653	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
207305	chr7	44023121	44023580	+	0	NA	Intergenic	Intergenic	-4156	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
185006	chr5	115209201	115209800	+	0	NA	3' UTR (NM_005023, exon 9 of 9)	3' UTR (NM_005023, exon 9 of 9)	-28954	NM_001017398	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
55176	chr12	100266621	100268730	+	0	NA	promoter-TSS (NM_001319311)	promoter-TSS (NM_001319311)	291	NM_001330253	55681		NM_017988	ENSG00000136021	SCYL2	AMC4|AMCNACC|CVAK104	SCY1 like pseudokinase 2	protein-coding
59087	chr13	21071001	21071200	+	0	NA	Intergenic	Intergenic	-9514	NM_014572	26524		NM_014572	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
204264	chr7	2632701	2632960	+	0	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	844	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
54149	chr12	76554471	76554630	+	0	NA	intron (NM_001319652, intron 1 of 25)	MIRb|SINE|MIR	5221	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
25825	chr10	11207621	11208250	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	42905	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
138494	chr2	207143231	207144600	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	-9778	NM_001270944	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
159117	chr3	12588751	12589050	+	0	NA	intron (NR_148942, intron 12 of 16)	MSTB1|LTR|ERVL-MaLR	-27901	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
119197	chr19	39435071	39436500	+	0	NA	intron (NM_001363860, intron 1 of 3)	CpG-14470	164	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
58398	chr12	131902401	131902680	+	0	NA	intron (NM_003565, intron 3 of 27)	intron (NM_003565, intron 3 of 27)	7918	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
214711	chr7	151001801	151002000	+	0	NA	exon (NM_001160110, exon 12 of 14)	exon (NM_001160110, exon 12 of 14)	8096	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
41252	chr11	65821351	65821650	+	0	NA	Intergenic	Intergenic	-12463	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
134962	chr2	152025601	152026150	+	0	NA	intron (NM_000726, intron 2 of 13)	intron (NM_000726, intron 2 of 13)	-51897	NM_001330115	785		NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
167582	chr3	129554701	129554900	+	0	NA	TTS (NM_015103)	TTS (NM_015103)	6415	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
201493	chr6	149026401	149026700	+	0	NA	TTS (NR_134599)	TTS (NR_134599)	6111	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
195526	chr6	37272701	37273190	+	0	NA	intron (NM_017772, intron 2 of 12)	MLT1L|LTR|ERVL-MaLR	-14790	NR_104443								
36935	chr11	10878721	10879050	+	0	NA	non-coding (NR_034137, exon 3 of 3)	non-coding (NR_034137, exon 3 of 3)	20668	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
65717	chr14	52918351	52919200	+	0	NA	intron (NM_001134999, intron 3 of 15)	intron (NM_001134999, intron 3 of 15)	32275	NM_006832	10979		NM_006832	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	FERM domain containing kindlin 2	protein-coding
80976	chr16	3954421	3954750	+	0	NA	Intergenic	Intergenic	-4141	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
197762	chr6	87279271	87279430	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-43238	NM_020425	57150		NM_020425	ENSG00000111850	SMIM8	C6orf162|dJ102H19.2	small integral membrane protein 8	protein-coding
202610	chr6	158726771	158727130	+	0	NA	intron (NM_001318745, intron 8 of 14)	AluY|SINE|Alu	37803	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
121259	chr19	46689471	46689630	+	0	NA	exon (NM_016457, exon 14 of 18)	exon (NM_016457, exon 14 of 18)	19804	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
116738	chr19	18468351	18468450	+	0	NA	intron (NM_006532, intron 2 of 11)	intron (NM_006532, intron 2 of 11)	-30267	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
91480	chr17	4892821	4893300	+	0	NA	exon (NM_153827, exon 20 of 32)	exon (NM_153827, exon 20 of 32)	-6476	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
102116	chr17	75030851	75030950	+	0	NA	Intergenic	AluY|SINE|Alu	-1671	NR_110835	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
204786	chr7	5618071	5618230	+	0	NA	Intergenic	AluJb|SINE|Alu	25334	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
180188	chr5	1486121	1486450	+	0	NA	intron (NM_024830, intron 5 of 13)	intron (NM_024830, intron 5 of 13)	24571	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
93136	chr17	17734951	17735250	+	0	NA	intron (NM_030665, intron 2 of 5)	AluSx1|SINE|Alu	31202	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
210719	chr7	100606751	100606850	+	0	NA	intron (NM_002593, intron 6 of 8)	AluJo|SINE|Alu	-2762	NR_038910	100129845		NR_038910	ENSG00000224729	PCOLCE-AS1	-	PCOLCE antisense RNA 1	ncRNA
101385	chr17	67342901	67343500	+	0	NA	intron (NM_174871, intron 8 of 9)	intron (NM_174871, intron 8 of 9)	23377	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
136413	chr2	176171871	176172430	+	0	NA	exon (NM_006898, exon 4 of 4)	exon (NM_006898, exon 4 of 4)	5979	NR_110458	401022		NR_033979	ENSG00000224189	HAGLR	HOXD-AS1|MIR7704HG|Mdgt|STEEL	HOXD antisense growth-associated long non-coding RNA	ncRNA
112181	chr19	5663751	5664450	+	0	NA	exon (NM_001201340, exon 15 of 20)	exon (NM_001201340, exon 15 of 20)	16138	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
203473	chr7	514901	515580	+	0	NA	intron (NM_033023, intron 2 of 5)	intron (NM_033023, intron 2 of 5)	4604	NM_002607	5154		NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
186367	chr5	134882221	134882550	+	0	NA	intron (NM_024715, intron 1 of 4)	SVA_D|Retroposon|SVA	8014	NM_024715	79770		NM_024715	ENSG00000113621	TXNDC15	BUG|C5orf14|MKS14|UNQ335	thioredoxin domain containing 15	protein-coding
73239	chr15	41691651	41692180	+	0	NA	TTS (NR_030356)	TTS (NR_030356)	330	NR_030356	693211		NR_030356	ENSG00000207766	MIR626	MIRN626|hsa-mir-626	microRNA 626	ncRNA
81610	chr16	10652471	10652630	+	0	NA	intron (NM_144674, intron 5 of 6)	(AC)n|Simple_repeat|Simple_repeat	42380	NM_144674	146279		NM_144674	ENSG00000153060	TEKT5	CT149	tektin 5	protein-coding
54347	chr12	89688901	89689500	+	0	NA	intron (NM_001366520, intron 1 of 21)	MER53|DNA|hAT	19638	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
165224	chr3	72995451	72995750	+	0	NA	Intergenic	MIR3|SINE|MIR	-1143	NM_001318026	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
192562	chr6	25413571	25413730	+	0	NA	intron (NM_001173977, intron 2 of 36)	intron (NM_001173977, intron 2 of 36)	134276	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
86837	chr16	67910121	67910380	+	0	NA	intron (NM_006742, intron 2 of 2)	LTR16C|LTR|ERVL	16996	NM_006742	5681		NM_006742	ENSG00000159792	PSKH1	-	protein serine kinase H1	protein-coding
73988	chr15	52021121	52021680	+	0	NA	intron (NM_002748, intron 1 of 5)	intron (NM_002748, intron 1 of 5)	2181	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
162782	chr3	49090071	49090550	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluY|SINE|Alu	3322	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
206484	chr7	33053871	33055080	+	0	NA	intron (NM_001374336, intron 1 of 10)	intron (NM_001374336, intron 1 of 10)	8301	NM_001002010	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
143846	chr20	32525851	32526450	+	0	NA	intron (NM_001256798, intron 2 of 10)	AluJo|SINE|Alu	16191	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
145105	chr20	38747701	38749180	+	0	NA	promoter-TSS (NM_024855)	promoter-TSS (NM_024855)	-20	NM_024855	79913		NM_024855	ENSG00000101442	ACTR5	Arp5|INO80M	actin related protein 5	protein-coding
214442	chr7	150044751	150045100	+	0	NA	non-coding (NR_148939, exon 2 of 2)	non-coding (NR_148939, exon 2 of 2)	2790	NM_001351027	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
226575	chr9	72592651	72593050	+	0	NA	intron (NM_138691, intron 2 of 23)	intron (NM_138691, intron 2 of 23)	71242	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
20804	chr1	201172771	201173530	+	0	NA	Intergenic	Intergenic	-1568	NM_001288564	252839		NM_016456	ENSG00000116857	TMEM9	DERM4|TMEM9A	transmembrane protein 9	protein-coding
108315	chr18	63418501	63418700	+	0	NA	intron (NM_004869, intron 1 of 10)	AluJb|SINE|Alu	3876	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
19317	chr1	173355401	173355680	+	0	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	105822	NR_125960	101928673		NR_125960	ENSG00000203739	PRDX6-AS1	-	PRDX6 antisense RNA 1	ncRNA
41772	chr11	66838871	66839230	+	0	NA	intron (NM_024650, intron 15 of 16)	intron (NM_024650, intron 15 of 16)	-4391	NM_005133	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
31638	chr10	97391771	97392230	+	0	NA	intron (NM_015179, intron 4 of 33)	L1MB2|LINE|L1	9340	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
189313	chr5	172145251	172146030	+	0	NA	intron (NM_005990, intron 2 of 18)	MIRb|SINE|MIR	42584	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
220156	chr8	94963471	94964200	+	0	NA	intron (NM_001354515, intron 2 of 9)	intron (NM_001354515, intron 2 of 9)	14275	NR_148909	137682		NM_152416	ENSG00000156170	NDUFAF6	C8orf38|FRTS5|MC1DN17	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein-coding
118164	chr19	35026721	35027350	+	0	NA	TTS (NM_001320035)	TTS (NM_001320035)	-3435	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
209469	chr7	76512801	76513380	+	0	NA	exon (NM_182684, exon 4 of 7)	exon (NM_182684, exon 4 of 7)	2538	NM_001347684	105375355		NM_030570	ENSG00000243566	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
139467	chr2	223957001	223958180	+	0	NA	exon (NM_022915, exon 1 of 4)	exon (NM_022915, exon 1 of 4)	127	NM_022915	65080		NM_022915	ENSG00000135900	MRPL44	COXPD16|L44MT|MRP-L44|mL44	mitochondrial ribosomal protein L44	protein-coding
120650	chr19	45077401	45077950	+	0	NA	intron (NM_001319055, intron 1 of 2)	intron (NM_001319055, intron 1 of 2)	-1197	NM_145288	162979		NM_145288	ENSG00000170684	ZNF296	ZFP296|ZNF342	zinc finger protein 296	protein-coding
86014	chr16	57480071	57480230	+	0	NA	promoter-TSS (NM_001369621)	promoter-TSS (NM_001369621)	227	NM_001369620	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
23132	chr1	226701621	226701980	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-26732	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
641	chr1	1344301	1345200	+	0	NA	intron (NM_004421, intron 1 of 14)	intron (NM_004421, intron 1 of 14)	4668	NM_004421	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
164960	chr3	71268921	71269180	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-20708	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
137580	chr2	197267551	197268380	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	34554	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
151435	chr21	46133401	46133680	+	0	NA	TTS (NM_001849)	TTS (NM_001849)	-17835	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
123814	chr19	55173501	55174550	+	0	NA	intron (NM_001297774, intron 6 of 6)	intron (NM_001297774, intron 6 of 6)	5323	NM_001297774	6861		NM_003180	ENSG00000129990	SYT5	-	synaptotagmin 5	protein-coding
230061	chr9	127425321	127425880	+	0	NA	intron (NM_001286696, intron 1 of 4)	AluSx1|SINE|Alu	1218	NM_007135	7633		NM_007135	ENSG00000196152	ZNF79	pT7	zinc finger protein 79	protein-coding
158638	chr3	4986301	4987630	+	0	NA	Intergenic	CpG	-7004	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
172930	chr4	3511821	3512580	+	0	NA	non-coding (NR_110005, exon 8 of 8)	non-coding (NR_110005, exon 8 of 8)	19949	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
72947	chr15	40449021	40449280	+	0	NA	intron (NR_125372, intron 1 of 4)	MIR|SINE|MIR	8197	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
138006	chr2	201264721	201265250	+	0	NA	intron (NM_033356, intron 1 of 7)	intron (NM_033356, intron 1 of 7)	4449	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
226462	chr9	71735101	71735300	+	0	NA	intron (NM_013390, intron 5 of 23)	L2a|LINE|L2	33313	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
153529	chr22	26567801	26568000	+	0	NA	intron (NM_001362923, intron 1 of 7)	L1ME3A|LINE|L1	-2559	NM_001008566	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
2955	chr1	11911171	11911550	+	0	NA	Intergenic	AluSx1|SINE|Alu	3206	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
120900	chr19	45595471	45596100	+	0	NA	intron (NM_005282, intron 1 of 1)	intron (NM_005282, intron 1 of 1)	6427	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
185494	chr5	131307671	131308230	+	0	NA	intron (NM_001038702, intron 1 of 4)	L1PA3|LINE|L1	43897	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
67940	chr14	74769921	74770980	+	0	NA	intron (NM_019589, intron 1 of 20)	AluSz|SINE|Alu	7134	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
207667	chr7	45088851	45090230	+	0	NA	promoter-TSS (NM_001146334)	promoter-TSS (NM_001146334)	-571	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
175649	chr4	76586001	76586200	+	0	NA	intron (NM_020859, intron 2 of 10)	CpG	10549	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
137669	chr2	197452881	197454150	+	0	NA	promoter-TSS (NM_025147)	promoter-TSS (NM_025147)	92	NM_001320818	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
234110	chrX	9475351	9476050	+	0	NA	intron (NM_005647, intron 1 of 17)	intron (NM_005647, intron 1 of 17)	10642	NM_005647	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
210687	chr7	100566121	100566600	+	0	NA	3' UTR (NM_006076, exon 12 of 12)	3' UTR (NM_006076, exon 12 of 12)	7540	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
3547	chr1	16139421	16139880	+	0	NA	intron (NM_004431, intron 3 of 16)	intron (NM_004431, intron 3 of 16)	16419	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
192475	chr6	24935251	24936280	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	195	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
87167	chr16	69327951	69328250	+	0	NA	3' UTR (NM_001379264, exon 6 of 6)	3' UTR (NM_001379264, exon 6 of 6)	2488	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
169541	chr3	170170151	170170650	+	0	NA	intron (NM_001308116, intron 4 of 14)	MER20|DNA|hAT-Charlie	11333	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
134616	chr2	144402101	144402700	+	0	NA	intron (NM_014795, intron 6 of 9)	intron (NM_014795, intron 6 of 9)	-69331	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
145564	chr20	44312151	44312250	+	0	NA	promoter-TSS (NM_001080472)	promoter-TSS (NM_001080472)	-998	NM_001080472	128486		NM_001080472	ENSG00000197296	FITM2	C20orf142|Fit2|SIDDIS|dJ881L22.2	fat storage inducing transmembrane protein 2	protein-coding
223830	chr8	144946721	144946980	+	0	NA	intron (NM_006958, intron 1 of 2)	intron (NM_006958, intron 1 of 2)	4030	NM_006958	7564		NM_006958	ENSG00000170631	ZNF16	HZF1|KOX9	zinc finger protein 16	protein-coding
183729	chr5	81043851	81043950	+	0	NA	intron (NM_006909, intron 2 of 26)	intron (NM_006909, intron 2 of 26)	-82993	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
201215	chr6	143542871	143543700	+	0	NA	Intergenic	Intergenic	18766	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
24316	chr1	236981431	236981550	+	0	NA	Intergenic	Intergenic	22951	NM_001276687	645745		NM_001039954	ENSG00000244020	MT1HL1	MT1P2	metallothionein 1H like 1	protein-coding
90449	chr17	1370871	1371650	+	0	NA	intron (NR_024058, intron 1 of 6)	AluJb|SINE|Alu	28962	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
27840	chr10	38489121	38489200	+	0	NA	Intergenic	Intergenic	61014	NR_024497	399744		NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
69061	chr14	91892721	91893250	+	0	NA	intron (NM_001384161, intron 6 of 12)	intron (NM_001384161, intron 6 of 12)	-25449	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
146311	chr20	49189451	49189550	+	0	NA	intron (NM_001319135, intron 1 of 14)	AluSx1|SINE|Alu	-1130	NM_001037328	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
75868	chr15	69712371	69712530	+	0	NA	Intergenic	MIRb|SINE|MIR	120250	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
132852	chr2	110860421	110861000	+	0	NA	intron (NM_001371254, intron 10 of 18)	intron (NM_001371254, intron 10 of 18)	128137	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
76975	chr15	78223871	78224230	+	0	NA	intron (NM_001199377, intron 1 of 13)	MLT1D|LTR|ERVL-MaLR	10515	NM_015162	23205		NM_015162	ENSG00000103740	ACSBG1	BG|BG1|BGM|GR-LACS|LPD	acyl-CoA synthetase bubblegum family member 1	protein-coding
3845	chr1	16916151	16916780	+	0	NA	Intergenic	Intergenic	-5466	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
89152	chr16	88524571	88525700	+	0	NA	intron (NR_148997, intron 2 of 3)	intron (NR_148997, intron 2 of 3)	5918	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
211803	chr7	107880351	107881100	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-10382	NM_001289751	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
160356	chr3	27805371	27805530	+	0	NA	intron (NR_146630, intron 2 of 4)	intron (NR_146630, intron 2 of 4)	7862	NR_146630	105377007		NR_146630	ENSG00000225548	LINC01980	-	long intergenic non-protein coding RNA 1980	ncRNA
189019	chr5	168746501	168746930	+	0	NA	intron (NM_003062, intron 20 of 35)	intron (NM_003062, intron 20 of 35)	21540	NR_029632	407001		NR_029632	ENSG00000207739	MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	ncRNA
64004	chr14	22492971	22493480	+	0	NA	Intergenic	Intergenic	-10266	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
88100	chr16	81523521	81523800	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-10242	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
208285	chr7	65981691	65982650	+	0	NA	promoter-TSS (NM_001284290)	promoter-TSS (NM_001284290)	43	NM_001284290	2990		NM_000181	ENSG00000169919	GUSB	BG|MPS7	glucuronidase beta	protein-coding
91266	chr17	4006701	4007300	+	0	NA	intron (NM_015113, intron 54 of 54)	intron (NM_015113, intron 54 of 54)	29897	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
134134	chr2	134161001	134161280	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	34015	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
156310	chr22	40577971	40578530	+	0	NA	intron (NM_001282661, intron 2 of 13)	AluSz|SINE|Alu	-44423	NM_001318139	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
116390	chr19	17953921	17954430	+	0	NA	intron (NM_002248, intron 1 of 10)	intron (NM_002248, intron 1 of 10)	2873	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
58028	chr12	124433071	124433230	+	0	NA	intron (NM_001077261, intron 10 of 47)	intron (NM_001077261, intron 10 of 47)	-95908	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
88468	chr16	85046001	85046400	+	0	NA	intron (NM_001286566, intron 1 of 11)	intron (NM_001286566, intron 1 of 11)	-17012	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
107533	chr18	48455821	48456650	+	0	NA	Intergenic	Intergenic	-43650	NM_001371287	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
8353	chr1	40241471	40242550	+	0	NA	Intergenic	AluSg7|SINE|Alu	-5927	NM_001008740	127391		NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
39944	chr11	62549471	62550030	+	0	NA	Intergenic	Intergenic	-2944	NM_001620	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
51332	chr12	51366001	51366400	+	0	NA	intron (NM_007210, intron 4 of 11)	AluSz|SINE|Alu	-19521	NM_001971	1990		NM_001971	ENSG00000139610	CELA1	ELA1	chymotrypsin like elastase 1	protein-coding
205452	chr7	17143421	17143700	+	0	NA	Intergenic	Intergenic	-155092	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
21591	chr1	206506971	206508550	+	0	NA	exon (NM_182664, exon 1 of 5)	exon (NM_182664, exon 1 of 5)	229	NM_182663	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
141899	chr20	848271	848430	+	0	NA	Intergenic	Intergenic	3707	NM_031424	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
75161	chr15	64636251	64636750	+	0	NA	intron (NM_015042, intron 3 of 9)	intron (NM_015042, intron 3 of 9)	66781	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
71169	chr14	105036451	105036750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-15517	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
25599	chr10	8055601	8056370	+	0	NA	intron (NM_001002295, intron 2 of 5)	CpG-2649	1297	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
33759	chr10	122510651	122511050	+	0	NA	intron (NM_002775, intron 7 of 8)	intron (NM_002775, intron 7 of 8)	49297	NM_002775	5654		NM_002775	ENSG00000166033	HTRA1	ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11	HtrA serine peptidase 1	protein-coding
190479	chr5	180293401	180294680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1957	NM_001135044	5601		NM_002752	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
215818	chr8	6405861	6407500	+	0	NA	promoter-TSS (NM_001172575)	promoter-TSS (NM_001172575)	53	NM_001322042	79648		NM_024596	ENSG00000147316	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
57499	chr12	122096151	122096780	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	17709	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
68217	chr14	76919751	76920530	+	0	NA	Intergenic	Intergenic	-39498	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
94312	chr17	28752851	28753600	+	0	NA	Intergenic	AluY|SINE|Alu	9214	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
78013	chr15	89776101	89777080	+	0	NA	exon (NM_001039958, exon 1 of 2)	exon (NM_001039958, exon 1 of 2)	258	NM_001039958	145873		NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior bHLH transcription factor 2	protein-coding
49926	chr12	39675121	39675630	+	0	NA	intron (NR_135051, intron 6 of 18)	L1PB1|LINE|L1	49192	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
34211	chr10	129517671	129518800	+	0	NA	intron (NM_002412, intron 1 of 4)	intron (NM_002412, intron 1 of 4)	50994	NM_002412	4255		NM_002412	ENSG00000170430	MGMT	-	O-6-methylguanine-DNA methyltransferase	protein-coding
212715	chr7	129794521	129795450	+	0	NA	Intergenic	Intergenic	-19971	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
15514	chr1	150486021	150486400	+	0	NA	Intergenic	AluSq10|SINE|Alu	-1209	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
178553	chr4	151106271	151106430	+	0	NA	Intergenic	L2a|LINE|L2	2523	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
92898	chr17	16446751	16447330	+	0	NA	intron (NM_207387, intron 2 of 2)	intron (NM_207387, intron 2 of 2)	5814	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
62619	chr13	100588121	100589350	+	0	NA	promoter-TSS (NM_001195087)	promoter-TSS (NM_001195087)	57	NM_001195087	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
74421	chr15	59098501	59099500	+	0	NA	Intergenic	AluSx|SINE|Alu	-6146	NM_004701	9133		NM_004701	ENSG00000157456	CCNB2	HsT17299	cyclin B2	protein-coding
60904	chr13	46166471	46166630	+	0	NA	intron (NM_002298, intron 1 of 15)	intron (NM_002298, intron 1 of 15)	15627	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
164648	chr3	66494171	66494330	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	5804	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
21262	chr1	204388851	204389780	+	0	NA	Intergenic	AluSg|SINE|Alu	-19596	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
40114	chr11	62817951	62819000	+	0	NA	intron (NM_001244666, intron 10 of 10)	AluSq|SINE|Alu	-13035	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
139838	chr2	230437701	230437900	+	0	NA	intron (NM_001080391, intron 2 of 28)	AluSg|SINE|Alu	21044	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
13993	chr1	120640201	120640780	+	0	NA	intron (NR_144516, intron 4 of 43)	intron (NR_144516, intron 4 of 43)	24946	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
92191	chr17	7833371	7834600	+	0	NA	TTS (NM_020877)	TTS (NM_020877)	-5921	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
94588	chr17	29713451	29714050	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	47682	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
13822	chr1	117620101	117620300	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	14152	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
118505	chr19	35951451	35951780	+	0	NA	intron (NR_136525, intron 1 of 4)	intron (NR_136525, intron 1 of 4)	4500	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
233100	chr9	137117371	137117730	+	0	NA	Intergenic	Intergenic	-2817	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
153038	chr22	23258151	23258450	+	0	NA	intron (NM_021574, intron 2 of 21)	intron (NM_021574, intron 2 of 21)	-4467	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
50452	chr12	47723471	47723830	+	0	NA	intron (NM_001172439, intron 1 of 9)	intron (NM_001172439, intron 1 of 9)	1840	NM_006025	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
155702	chr22	39090171	39092830	+	0	NA	Intergenic	Intergenic	-5724	NM_001166004	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
35444	chr11	1450371	1450530	+	0	NA	intron (NM_001256630, intron 13 of 19)	intron (NM_001256630, intron 13 of 19)	30436	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
28347	chr10	46785321	46785580	+	0	NA	intron (NR_111968, intron 1 of 5)	L2c|LINE|L2	-1283	NR_003611	399761		NM_001040053	ENSG00000291069	BMS1P1	BMS1LP1|BMS1LP5|BMS1P5	BMS1 pseudogene 1	pseudo
133606	chr2	124361751	124361850	+	0	NA	intron (NM_130773, intron 3 of 23)	L1PA2|LINE|L1	336513	NM_130773	129684		NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein family member 5	protein-coding
176466	chr4	89316551	89317430	+	0	NA	Intergenic	L2a|LINE|L2	-9190	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
235376	chrX	44931451	44932000	+	0	NA	intron (NM_001291416, intron 2 of 28)	L1MB2|LINE|L1	58537	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
116127	chr19	17328601	17329530	+	0	NA	intron (NM_020959, intron 12 of 17)	CpG-13984	5790	NM_020959	57719		NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
183268	chr5	76458021	76458400	+	0	NA	intron (NM_006633, intron 1 of 35)	MIRb|SINE|MIR	54925	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
60121	chr13	38915471	38915630	+	0	NA	Intergenic	Intergenic	75281	NM_145286	161003		NM_145286	ENSG00000133115	STOML3	Epb7.2l|SRO	stomatin like 3	protein-coding
44166	chr11	96219151	96219450	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-122138	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
33925	chr10	124605671	124606500	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-97943	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
107328	chr18	45666201	45667780	+	0	NA	exon (NM_007163, exon 13 of 20)	exon (NM_007163, exon 13 of 20)	51514	NM_007163	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
189980	chr5	177450871	177451130	+	0	NA	intron (NM_001174102, intron 1 of 2)	intron (NM_001174102, intron 1 of 2)	2675	NM_001174102	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
14031	chr1	120742471	120742700	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	18646	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
160864	chr3	33384421	33384680	+	0	NA	intron (NR_146130, intron 15 of 15)	AluSx1|SINE|Alu	55828	NM_001128160	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
229439	chr9	121375971	121376500	+	0	NA	Intergenic	L1MA4|LINE|L1	-5931	NM_001270527	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
81884	chr16	11681421	11682080	+	0	NA	intron (NR_136674, intron 8 of 8)	intron (NR_136674, intron 8 of 8)	13295	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
124804	chr2	7515371	7515780	+	0	NA	Intergenic	L2c|LINE|L2	94314	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
126945	chr2	33528041	33528150	+	0	NA	intron (NM_001349979, intron 10 of 17)	intron (NM_001349979, intron 10 of 17)	14220	NM_015376	25780		NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
114851	chr19	13850201	13850900	+	0	NA	Intergenic	CpG	-7632	NR_036515	284454		NR_036515		MIR23AHG	Smyca	miR-23a/27a/24-2 cluster host gene	ncRNA
60828	chr13	45397671	45397830	+	0	NA	intron (NM_001286806, intron 7 of 8)	intron (NM_001286806, intron 7 of 8)	-20412	NR_047031	100874259		NR_047031	ENSG00000251015	SLC25A30-AS1	-	SLC25A30 antisense RNA 1	ncRNA
195944	chr6	41928771	41929130	+	0	NA	intron (NM_004053, intron 2 of 6)	AluSx|SINE|Alu	7451	NM_004053	705		NM_004053	ENSG00000112578	BYSL	BYSTIN|Enp1	bystin like	protein-coding
227637	chr9	92946771	92948530	+	0	NA	5' UTR (NM_001083536, exon 1 of 18)	5' UTR (NM_001083536, exon 1 of 18)	127	NM_001083536	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
133956	chr2	130578921	130579180	+	0	NA	intron (NR_033930, intron 2 of 2).2	intron (NR_033930, intron 2 of 2).2	8201	NR_027314	150527		NR_027313	ENSG00000290614	PRSS40A	TISP43	serine protease 40A (pseudogene)	pseudo
67185	chr14	68824451	68825040	+	0	NA	Intergenic	Intergenic	-28502	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
197236	chr6	69784571	69785250	+	0	NA	intron (NM_001363722, intron 2 of 15)	L2a|LINE|L2	11556	NM_001363722	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
170152	chr3	183518371	183518850	+	0	NA	intron (NM_130446, intron 2 of 6)	intron (NM_130446, intron 2 of 6)	-30125	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
29072	chr10	67895851	67896030	+	0	NA	intron (NM_001142498, intron 3 of 7)	AluSq2|SINE|Alu	4538	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
125090	chr2	9706971	9707130	+	0	NA	Intergenic	MIRc|SINE|MIR	-76053	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
50234	chr12	46236151	46236930	+	0	NA	intron (NM_001278387, intron 4 of 17)	MIR|SINE|MIR	29976	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
206432	chr7	32761521	32762380	+	0	NA	non-coding (NR_036501, exon 1 of 1)	non-coding (NR_036501, exon 1 of 1)	3664	NR_036501	401321		NR_036501		LINC00997	-	long intergenic non-protein coding RNA 997	ncRNA
162734	chr3	49033301	49033780	+	0	NA	intron (NM_001320580, intron 7 of 10)	intron (NM_001320580, intron 7 of 10)	-4142	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
174764	chr4	47531551	47532500	+	0	NA	intron (NM_020453, intron 5 of 22)	intron (NM_020453, intron 5 of 22)	46750	NM_020453	57205		NM_020453	ENSG00000145246	ATP10D	ATPVD	ATPase phospholipid transporting 10D (putative)	protein-coding
191886	chr6	15331851	15331950	+	0	NA	intron (NM_001267040, intron 1 of 17)	Tigger7|DNA|TcMar-Tigger	83045	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
88527	chr16	85385401	85385600	+	0	NA	Intergenic	Intergenic	-79175	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
64246	chr14	23120601	23121880	+	0	NA	Intergenic	Intergenic	-1985	NM_001805	1053		NM_001805	ENSG00000092067	CEBPE	C/EBP-epsilon|CRP1|IMD108|SGD1|c/EBP epsilon	CCAAT enhancer binding protein epsilon	protein-coding
181249	chr5	39206571	39207000	+	0	NA	intron (NM_001243093, intron 1 of 18)	L1ME4b|LINE|L1	12778	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
61271	chr13	50086871	50087230	+	0	NA	intron (NR_109974, intron 2 of 6)	MLT1D|LTR|ERVL-MaLR	4881	NR_109974	10301		NM_005887	ENSG00000176124	DLEU1	BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6	deleted in lymphocytic leukemia 1	ncRNA
65279	chr14	50007121	50007750	+	0	NA	promoter-TSS (NR_126497)	promoter-TSS (NR_126497)	85	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
99283	chr17	49758671	49759900	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	4846	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
226195	chr9	65257671	65258130	+	0	NA	Intergenic	Intergenic	27309	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
209045	chr7	74661971	74662130	+	0	NA	intron (NM_001163636, intron 1 of 33)	intron (NM_001163636, intron 1 of 33)	4332	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
10931	chr1	84146251	84147150	+	0	NA	intron (NM_182948, intron 1 of 9)	intron (NM_182948, intron 1 of 9)	2429	NM_001300916	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
19359	chr1	173858601	173859150	+	0	NA	TTS (NM_001365212)	TTS (NM_001365212)	-4373	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
15773	chr1	151174071	151174830	+	0	NA	exon (NM_013353, exon 3 of 10)	exon (NM_013353, exon 3 of 10)	1531	NM_013353	29765		NM_013353	ENSG00000163157	TMOD4	SK-TMOD	tropomodulin 4	protein-coding
188324	chr5	151218971	151219430	+	0	NA	intron (NR_160730, intron 2 of 3)	intron (NR_160730, intron 2 of 3)	4892	NM_015621	26112		NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
96058	chr17	39527221	39527700	+	0	NA	intron (NM_015083, intron 13 of 13)	intron (NM_015083, intron 13 of 13)	65974	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
174663	chr4	41213971	41215030	+	0	NA	promoter-TSS (NM_001330656)	promoter-TSS (NM_001330656)	42	NM_001330656	323		NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
162633	chr3	48792101	48792630	+	0	NA	intron (NM_004157, intron 3 of 10)	AluSg|SINE|Alu	55509	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
20364	chr1	197921421	197922100	+	0	NA	intron (NM_020204, intron 3 of 4)	intron (NM_020204, intron 3 of 4)	4388	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
198816	chr6	109059501	109060180	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	35006	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
48403	chr12	9654671	9655580	+	0	NA	non-coding (NR_046448, exon 3 of 5)	non-coding (NR_046448, exon 3 of 5)	7078	NR_002814	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
114965	chr19	14004601	14004800	+	0	NA	intron (NM_002918, intron 1 of 20)	intron (NM_002918, intron 1 of 20)	1620	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
129108	chr2	65129461	65131030	+	0	NA	promoter-TSS (NM_015543)	promoter-TSS (NM_015543)	56	NM_015543	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
99076	chr17	48954301	48954500	+	0	NA	Intergenic	ERVL47-int|LTR|ERVL	-9558	NM_001317192	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
198531	chr6	106536151	106536650	+	0	NA	intron (NM_001371242, intron 8 of 21)	L1MC5a|LINE|L1	24545	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
95187	chr17	35194271	35194430	+	0	NA	promoter-TSS (NM_152462)	promoter-TSS (NM_152462)	43	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
142024	chr20	1659871	1660750	+	0	NA	Intergenic	L1MEd|LINE|L1	-2531	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
45426	chr11	118397601	118397830	+	0	NA	3' UTR (NM_001204077, exon 20 of 20)	3' UTR (NM_001204077, exon 20 of 20)	-3674	NR_033759	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
177101	chr4	108078251	108078980	+	0	NA	intron (NM_016269, intron 7 of 11)	intron (NM_016269, intron 7 of 11)	73951	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
1539	chr1	3384371	3384930	+	0	NA	intron (NM_199454, intron 3 of 16)	intron (NM_199454, intron 3 of 16)	-70015	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
232441	chr9	136114351	136114450	+	0	NA	TTS (NM_001256526)	TTS (NM_001256526)	-3392	NR_165242	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
163426	chr3	50571171	50571330	+	0	NA	promoter-TSS (NM_001171741)	promoter-TSS (NM_001171741)	-223	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
77650	chr15	85500871	85501030	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	-119000	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
24028	chr1	235274921	235275900	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-51806	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
142942	chr20	18739801	18740000	+	0	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	-41192	NR_109955	101929526		NR_109955	ENSG00000233993	DTD1-AS1	-	DTD1 antisense RNA 1	ncRNA
237512	chrX	120016271	120016430	+	0	NA	promoter-TSS (NR_131250)	promoter-TSS (NR_131250)	-799	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
181027	chr5	35876901	35877550	+	0	NA	non-coding (NR_120485, exon 6 of 6)	non-coding (NR_120485, exon 6 of 6)	20334	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
166395	chr3	113537001	113537580	+	0	NA	intron (NM_001322297, intron 1 of 24)	intron (NM_001322297, intron 1 of 24)	4735	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
93602	chr17	19136111	19137300	+	0	NA	intron (NM_001129778, intron 2 of 3)	intron (NM_001129778, intron 2 of 3)	9116	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
75742	chr15	68281621	68282080	+	0	NA	intron (NM_015322, intron 1 of 1)	AluYm1|SINE|Alu	4105	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
704	chr1	1419801	1420730	+	0	NA	exon (NM_001145210, exon 3 of 4)	exon (NM_001145210, exon 3 of 4)	1011	NM_001375659	441869		NM_001145210	ENSG00000235098	ANKRD65	-	ankyrin repeat domain 65	protein-coding
138935	chr2	218237201	218237400	+	0	NA	intron (NM_152862, intron 5 of 10)	AluSq|SINE|Alu	19903	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
139225	chr2	219295851	219295950	+	0	NA	intron (NM_001199763, intron 17 of 21)	intron (NM_001199763, intron 17 of 21)	-1700	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
11950	chr1	93873901	93874800	+	0	NA	intron (NM_014597, intron 3 of 6)	MER20|DNA|hAT-Charlie	4856	NM_014597	30836		NM_014597	ENSG00000067334	DNTTIP2	ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2	deoxynucleotidyltransferase terminal interacting protein 2	protein-coding
105841	chr18	2996651	2996950	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	15147	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
220203	chr8	96153371	96154180	+	0	NA	intron (NM_001001557, intron 1 of 1)	intron (NM_001001557, intron 1 of 1)	7031	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
58316	chr12	131047451	131048200	+	0	NA	intron (NM_001330497, intron 14 of 25)	intron (NM_001330497, intron 14 of 25)	-53849	NR_131950	105755954		NR_131950		ADGRD1-AS1	LACAT8	ADGRD1 antisense RNA 1	ncRNA
74320	chr15	58411201	58411430	+	0	NA	Intergenic	AluY|SINE|Alu	-20676	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
68259	chr14	77030471	77030630	+	0	NA	Intergenic	AluJb|SINE|Alu	-1842	NM_024496	64207		NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1|NEDAMSS	interferon regulatory factor 2 binding protein like	protein-coding
5795	chr1	26551471	26551630	+	0	NA	intron (NM_001006665, intron 4 of 20)	intron (NM_001006665, intron 4 of 20)	-2992	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
51045	chr12	49777551	49778550	+	0	NA	Intergenic	Intergenic	36241	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
134182	chr2	134301021	134301680	+	0	NA	intron (NM_001371457, intron 3 of 16)	L1ME2|LINE|L1	47278	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
18753	chr1	167494601	167494800	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	23829	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
62657	chr13	102399571	102400500	+	0	NA	intron (NM_001321942, intron 1 of 5)	(CTCCGC)n|Simple_repeat|Simple_repeat	1997	NM_001321937	2259		NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|NYS4|SCA27|SCA27A|SCA27B	fibroblast growth factor 14	protein-coding
36843	chr11	10301001	10301400	+	0	NA	Intergenic	Intergenic	-3873	NM_001124	133		NM_001124	ENSG00000148926	ADM	AM|PAMP	adrenomedullin	protein-coding
191507	chr6	11275671	11276480	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-43393	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
176498	chr4	94205701	94206100	+	0	NA	intron (NR_125922, intron 1 of 8)	AluYh3|SINE|Alu	1656	NR_125922	101929210		NR_125922	ENSG00000246541	SMARCAD1-DT	-	SMARCAD1 divergent transcript	ncRNA
20928	chr1	202196971	202198480	+	0	NA	intron (NM_001017403, intron 1 of 17)	U13_|snRNA|snRNA	3735	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
75308	chr15	65288701	65289100	+	0	NA	Intergenic	L1M4|LINE|L1	-2017	NM_001316943	54956		NM_017851	ENSG00000138617	PARP16	ARTD15|C15orf30|pART15	poly(ADP-ribose) polymerase family member 16	protein-coding
183296	chr5	76555101	76556050	+	0	NA	intron (NM_001285460, intron 1 of 34)	intron (NM_001285460, intron 1 of 34)	8166	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
3997	chr1	18918871	18919130	+	0	NA	intron (NM_001136265, intron 3 of 8)	intron (NM_001136265, intron 3 of 8)	-16201	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
101157	chr17	65059751	65060050	+	0	NA	Intergenic	AluJr4|SINE|Alu	-3160	NM_006572	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
195022	chr6	35471351	35471450	+	0	NA	TTS (NM_007104)	TTS (NM_007104)	892	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
9920	chr1	54463701	54464180	+	0	NA	Intergenic	Intergenic	-57546	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
231159	chr9	129879951	129880430	+	0	NA	exon (NM_001008563, exon 25 of 26)	exon (NM_001008563, exon 25 of 26)	10585	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
167086	chr3	127455551	127455850	+	0	NA	Intergenic	CpG	-65030	NR_110147	101927123		NR_110147	ENSG00000244215	LINC02016	-	long intergenic non-protein coding RNA 2016	ncRNA
52920	chr12	57238051	57238610	+	0	NA	intron (NM_020142, intron 1 of 4)	CpG	2362	NM_020142	56901		NM_020142	ENSG00000185633	NDUFA4L2	COXFA4L2|MISTRH|NUOMS	NDUFA4 mitochondrial complex associated like 2	protein-coding
153974	chr22	30371151	30371250	+	0	NA	non-coding (NR_046312, exon 2 of 2)	non-coding (NR_046312, exon 2 of 2)	6705	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
33717	chr10	121900551	121901030	+	0	NA	intron (NR_110006, intron 4 of 9)	intron (NR_110006, intron 4 of 9)	27241	NM_007041	11101		NM_007041	ENSG00000107669	ATE1	-	arginyltransferase 1	protein-coding
168500	chr3	143674251	143674630	+	0	NA	intron (NM_173653, intron 5 of 15)	intron (NM_173653, intron 5 of 15)	174028	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
43789	chr11	86286801	86287830	+	0	NA	Intergenic	Intergenic	8982	NR_106813	102465452		NR_106813	ENSG00000283744	MIR6755	hsa-mir-6755	microRNA 6755	ncRNA
23606	chr1	230124721	230125350	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	57797	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
203860	chr7	1461671	1462100	+	0	NA	Intergenic	MIR3|SINE|MIR	-2415	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
219453	chr8	73013801	73014000	+	0	NA	exon (NM_017489, exon 2 of 10)	exon (NM_017489, exon 2 of 10)	5036	NM_017489	7013		NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding
32508	chr10	102757521	102757780	+	0	NA	intron (NM_001083913, intron 1 of 3)	AluJr|SINE|Alu	13702	NM_001083913	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
147997	chr20	63027851	63028500	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	8853	NR_028295	100144596		NM_022099		LINC00029	C20orf51|NCRNA00029	long intergenic non-protein coding RNA 29	ncRNA
25000	chr10	3186151	3186850	+	0	NA	Intergenic	Intergenic	-13659	NM_001242307	10531		NM_014889	ENSG00000107959	PITRM1	MP1|PreP|SCAR30	pitrilysin metallopeptidase 1	protein-coding
86966	chr16	68142301	68142700	+	0	NA	intron (NM_173165, intron 3 of 9)	AluSx1|SINE|Alu	57130	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
185502	chr5	131318021	131318280	+	0	NA	intron (NM_001375633, intron 2 of 5)	AluJb|SINE|Alu	54097	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
156212	chr22	40331521	40331780	+	0	NA	3' UTR (NM_001162501, exon 23 of 23)	3' UTR (NM_001162501, exon 23 of 23)	-14850	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
116292	chr19	17753871	17754030	+	0	NA	promoter-TSS (NR_169258)	promoter-TSS (NR_169258)	-259	NM_001384395	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
4848	chr1	23691251	23692900	+	0	NA	intron (NM_001199802, intron 1 of 5)	CpG	269	NM_000975	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
7262	chr1	32360771	32360930	+	0	NA	TTS (NM_001167676)	TTS (NM_001167676)	1393	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
127563	chr2	42492901	42494600	+	0	NA	promoter-TSS (NM_001282755)	promoter-TSS (NM_001282755)	232	NM_172344	170850		NM_133329	ENSG00000171126	KCNG3	KV10.1|KV6.3	potassium voltage-gated channel modifier subfamily G member 3	protein-coding
38999	chr11	47714551	47715800	+	0	NA	5' UTR (NM_024783, exon 1 of 19)	5' UTR (NM_024783, exon 1 of 19)	194	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
156983	chr22	42498001	42498200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2479	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
16832	chr1	155659001	155659400	+	0	NA	TTS (NM_139118)	TTS (NM_139118)	20055	NR_132762	106633810		NR_132762		SCARNA26A	-	small Cajal body-specific RNA 26A	ncRNA
121611	chr19	47419601	47419930	+	0	NA	promoter-TSS (NM_020160)	promoter-TSS (NM_020160)	-238	NM_001009813	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
112855	chr19	7549951	7550400	+	0	NA	intron (NM_006702, intron 17 of 34)	CpG-13551	14458	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
213639	chr7	139680821	139681350	+	0	NA	intron (NM_022740, intron 2 of 14)	intron (NM_022740, intron 2 of 14)	96913	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
120833	chr19	45503401	45504000	+	0	NA	Intergenic	Intergenic	-3779	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
89312	chr16	88722851	88723150	+	0	NA	exon (NM_001142864, exon 34 of 51)	exon (NM_001142864, exon 34 of 51)	-6663	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
2634	chr1	10298921	10299000	+	0	NA	promoter-TSS (NR_004394)	promoter-TSS (NR_004394)	-6	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
118984	chr19	38879571	38879900	+	0	NA	intron (NR_034146, intron 11 of 13)	(GGCAGG)n|Simple_repeat|Simple_repeat	-1460	NM_001195833	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
42102	chr11	67582251	67582900	+	0	NA	Intergenic	L1M5|LINE|L1	-1237	NM_000852	2950		NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
192066	chr6	16621871	16622850	+	0	NA	intron (NM_000332, intron 4 of 8)	(TGG)n|Simple_repeat|Simple_repeat	137824	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
164180	chr3	56798021	56798630	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	3624	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
24156	chr1	235860071	235860830	+	0	NA	intron (NM_001301365, intron 1 of 52)	L1MC1|LINE|L1	6456	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
71807	chr15	21760501	21761100	+	0	NA	Intergenic	Intergenic	-24801	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
41506	chr11	66254871	66255030	+	0	NA	Intergenic	Intergenic	-2344	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
185935	chr5	132935801	132936300	+	0	NA	intron (NM_014423, intron 2 of 20)	AluYm1|SINE|Alu	27584	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
151994	chr22	19175251	19176250	+	0	NA	non-coding (NR_046298, exon 8 of 8)	non-coding (NR_046298, exon 8 of 8)	2755	NM_001287387	6576		NM_005984	ENSG00000100075	SLC25A1	CIC|CMS23|CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
122763	chr19	50133671	50134350	+	0	NA	promoter-TSS (NR_024230)	promoter-TSS (NR_024230)	-146	NR_024231	100170224		NR_024231		SNAR-B1	-	small NF90 (ILF3) associated RNA B1	snRNA
111914	chr19	4699301	4699700	+	0	NA	intron (NM_001384635, intron 8 of 9)	intron (NM_001384635, intron 8 of 9)	20218	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
102682	chr17	76121221	76122700	+	0	NA	Intergenic	CpG	-18173	NM_001375976	23265		NM_015219	ENSG00000182473	EXOC7	2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|NEDSEBA|YJL085W	exocyst complex component 7	protein-coding
128681	chr2	61493301	61494500	+	0	NA	exon (NM_003400, exon 12 of 25)	exon (NM_003400, exon 12 of 25)	-22813	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
181276	chr5	39273271	39273930	+	0	NA	Intergenic	Tigger19b|DNA|TcMar-Tigger	-2951	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
89588	chr16	89276951	89277300	+	0	NA	intron (NM_013275, intron 9 of 12)	intron (NM_013275, intron 9 of 12)	-19003	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
172803	chr4	2965351	2965450	+	0	NA	intron (NM_001350173, intron 1 of 13)	intron (NM_001350173, intron 1 of 13)	1829	NM_005307	2868		NM_005307	ENSG00000125388	GRK4	GPRK2L|GPRK4|GRK4a|IT11	G protein-coupled receptor kinase 4	protein-coding
62912	chr13	110925271	110925500	+	0	NA	Intergenic	MER41A|LTR|ERV1	-10316	NR_104587	55608		NM_017664	ENSG00000088448	ANKRD10	-	ankyrin repeat domain 10	protein-coding
218528	chr8	53845251	53845580	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-2104	NM_213619	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
178785	chr4	153474471	153474630	+	0	NA	intron (NM_015196, intron 3 of 34)	L2b|LINE|L2	8190	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
180968	chr5	35761421	35761930	+	0	NA	intron (NM_024867, intron 25 of 36)	intron (NM_024867, intron 25 of 36)	-95216	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
119320	chr19	39898971	39899630	+	0	NA	intron (NM_003890, intron 11 of 28)	intron (NM_003890, intron 11 of 28)	35326	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
18086	chr1	160681071	160681930	+	0	NA	intron (NM_001256030, intron 2 of 2)	intron (NM_001256030, intron 2 of 2)	30322	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
6979	chr1	31793371	31793730	+	0	NA	intron (NM_144569, intron 12 of 15)	intron (NM_144569, intron 12 of 15)	22501	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
8652	chr1	41801921	41802180	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	116872	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
17162	chr1	156209221	156209480	+	0	NA	intron (NR_104411, intron 2 of 2)	intron (NR_104411, intron 2 of 2)	-3638	NM_001199663	100527963		NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF-1|PMF1	PMF1-BGLAP readthrough	protein-coding
232712	chr9	136577801	136578730	+	0	NA	Intergenic	Intergenic	30423	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
94152	chr17	28349101	28349300	+	0	NA	intron (NM_001290145, intron 9 of 10)	intron (NM_001290145, intron 9 of 10)	8327	NM_015584	26073		NM_015584	ENSG00000004142	POLDIP2	PDIP38|POLD4|p38	DNA polymerase delta interacting protein 2	protein-coding
124210	chr19	56837671	56838030	+	0	NA	promoter-TSS (NM_001369733)	promoter-TSS (NM_001369733)	-42	NM_001369733	5178		NM_006210	ENSG00000198300	PEG3	PW1|ZKSCAN22|ZNF904|ZSCAN24	paternally expressed 3	protein-coding
194117	chr6	31958301	31960130	+	0	NA	promoter-TSS (NM_002904)	promoter-TSS (NM_002904)	40	NM_006929	6499		NM_006929	ENSG00000204351	SKIC2	170A|DDX13|HLP|SKI2|SKI2W|SKIV2|SKIV2L|SKIV2L1|THES2	SKI2 subunit of superkiller complex	protein-coding
6347	chr1	27728251	27728550	+	0	NA	intron (NM_001143914, intron 2 of 7)	AluJb|SINE|Alu	2439	NM_001143915	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
60730	chr13	44292751	44292850	+	0	NA	Intergenic	Intergenic	-80850	NM_001346980	387923		NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
66193	chr14	60980651	60981850	+	0	NA	promoter-TSS (NM_020810)	promoter-TSS (NM_020810)	5	NR_033344	145389		NM_153811	ENSG00000139974	SLC38A6	NAT-1|SNAT6	solute carrier family 38 member 6	protein-coding
112961	chr19	7826821	7827300	+	0	NA	Intergenic	AluSp|SINE|Alu	-3158	NM_001159944	115704		NM_145245	ENSG00000142459	EVI5L	-	ecotropic viral integration site 5 like	protein-coding
138502	chr2	207161501	207161700	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	4348	NM_003709	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
123302	chr19	53566071	53566830	+	0	NA	intron (NM_001317117, intron 3 of 5)	AluSx1|SINE|Alu	11143	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
225672	chr9	36469621	36470200	+	0	NA	Intergenic	AluJb|SINE|Alu	-68712	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
40354	chr11	63962971	63963130	+	0	NA	Intergenic	Intergenic	-11570	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
130256	chr2	84855451	84856180	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	25269	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
18273	chr1	161111451	161111750	+	0	NA	intron (NM_012394, intron 1 of 3)	MIRb|SINE|MIR	6437	NM_012394	5202		NM_012394	ENSG00000143256	PFDN2	PFD2	prefoldin subunit 2	protein-coding
105223	chr17	82347501	82348350	+	0	NA	Intergenic	Intergenic	-11322	NM_207459	400629		NM_207459	ENSG00000182459	TEX19	-	testis expressed 19	protein-coding
171715	chr3	197911851	197912150	+	0	NA	intron (NM_032263, intron 9 of 11)	intron (NM_032263, intron 9 of 11)	37925	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
105347	chr17	82634151	82634450	+	0	NA	intron (NM_019613, intron 2 of 9)	AluSg|SINE|Alu	14144	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
235349	chrX	44282551	44282650	+	0	NA	intron (NM_025184, intron 2 of 14)	AluSx|SINE|Alu	61072	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
115758	chr19	16325901	16327800	+	0	NA	intron (NM_016270, intron 2 of 2)	CpG-13946	2024	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
68779	chr14	91142171	91142930	+	0	NA	intron (NM_001286471, intron 1 of 13)	intron (NM_001286471, intron 1 of 13)	16124	NR_003709	100124539		NR_003709	ENSG00000221102	SNORA11B	-	small nucleolar RNA, H/ACA box 11B	snoRNA
122664	chr19	49871771	49872130	+	0	NA	intron (NM_001278160, intron 2 of 4)	(CCACCG)n|Simple_repeat|Simple_repeat	4299	NM_001278159	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
119577	chr19	40673301	40673700	+	0	NA	exon (NM_001289979, exon 7 of 9)	exon (NM_001289979, exon 7 of 9)	16664	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
5069	chr1	24671471	24672130	+	0	NA	intron (NR_159382, intron 17 of 17)	L1MB8|LINE|L1	28221	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
15253	chr1	149627701	149628380	+	0	NA	intron (NR_111950, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	21028	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
31282	chr10	92376301	92376500	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-42261	NR_038243	100507674		NR_038243		MARK2P9	-	MARK2 pseudogene 9	pseudo
180996	chr5	35820771	35821000	+	0	NA	Intergenic	L2|LINE|L2	-36006	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
70965	chr14	104693771	104694180	+	0	NA	intron (NM_032714, intron 1 of 4)	intron (NM_032714, intron 1 of 4)	4357	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
69425	chr14	94074221	94074950	+	0	NA	intron (NM_020414, intron 2 of 8).2	L1ME1|LINE|L1	6617	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
224234	chr9	5831121	5831600	+	0	NA	intron (NM_024896, intron 1 of 14)	AluJb|SINE|Alu	1757	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
95389	chr17	35897971	35899080	+	0	NA	Intergenic	Intergenic	12498	NR_126038	100533789		NR_126038		LRRC37A8P	-	leucine rich repeat containing 37 member A8, pseudogene	pseudo
91381	chr17	4563401	4563800	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-3023	NM_001122890	124975		NM_153338	ENSG00000167741	GGT6	-	gamma-glutamyltransferase 6	protein-coding
213701	chr7	140215401	140215600	+	0	NA	Intergenic	Intergenic	38239	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
223754	chr8	144515301	144515500	+	0	NA	exon (NM_004260, exon 7 of 21)	exon (NM_004260, exon 7 of 21)	2433	NM_004260	9401		NM_004260	ENSG00000160957	RECQL4	RECQ4	RecQ like helicase 4	protein-coding
92816	chr17	16022171	16022330	+	0	NA	intron (NM_017775, intron 7 of 9)	L1ME3Cz|LINE|L1	22426	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
65759	chr14	54348001	54348230	+	0	NA	Intergenic	Intergenic	-48753	NM_001330173	1033		NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
61751	chr13	74245451	74245750	+	0	NA	intron (NR_144451, intron 1 of 1)	MIR3|SINE|MIR	14156	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
45648	chr11	119002051	119003030	+	0	NA	TTS (NR_003040)	TTS (NR_003040)	1053	NR_003040	649946		NR_003040		RPL23AP64	RPL23A_25_1182	ribosomal protein L23a pseudogene 64	pseudo
69373	chr14	94025771	94026900	+	0	NA	promoter-TSS (NM_023112)	promoter-TSS (NM_023112)	-5	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
150274	chr21	41806071	41806730	+	0	NA	intron (NR_104258, intron 21 of 23)	(CACCAC)n|Simple_repeat|Simple_repeat	-39348	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
59630	chr13	28099951	28100750	+	0	NA	intron (NM_004119, intron 1 of 23)	CpG	226	NM_004119	2322		NM_004119	ENSG00000122025	FLT3	CD135|FLK-2|FLK2|STK1	fms related receptor tyrosine kinase 3	protein-coding
100470	chr17	61415451	61416080	+	0	NA	Intergenic	Intergenic	4014	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
82973	chr16	21950801	21951430	+	0	NA	Intergenic	Intergenic	-2246	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
78242	chr15	90693621	90694050	+	0	NA	intron (NR_120372, intron 2 of 3)	intron (NR_120372, intron 2 of 3)	23305	NR_120372	101926895		NR_120372	ENSG00000259736	CRTC3-AS1	-	CRTC3 antisense RNA 1	ncRNA
19157	chr1	171586001	171586200	+	0	NA	intron (NM_015172, intron 30 of 33)	AluSx1|SINE|Alu	-33663	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
70990	chr14	104715821	104716080	+	0	NA	intron (NM_022489, intron 22 of 22)	intron (NM_022489, intron 22 of 22)	-8279	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
234445	chrX	16964951	16965250	+	0	NA	intron (NM_001080975, intron 1 of 17)	SVA_D|Retroposon|SVA	18442	NM_001080975	9185		NM_004726	ENSG00000169891	REPS2	POB1	RALBP1 associated Eps domain containing 2	protein-coding
235043	chrX	40095471	40096100	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	2173	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
26122	chr10	13648421	13648680	+	0	NA	intron (NM_018027, intron 24 of 24)	intron (NM_018027, intron 24 of 24)	59017	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
7993	chr1	37973521	37973780	+	0	NA	intron (NM_006802, intron 12 of 16)	L1PA5|LINE|L1	16372	NM_001320830	10946		NM_006802	ENSG00000183431	SF3A3	PRP9|PRPF9|SAP61|SF3a60	splicing factor 3a subunit 3	protein-coding
9764	chr1	53394151	53394250	+	0	NA	Intergenic	Intergenic	45820	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
24398	chr1	243104221	243104480	+	0	NA	Intergenic	AluJb|SINE|Alu	-2606	NR_029401	731275		NR_029401	ENSG00000291217	LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
83827	chr16	28850901	28851400	+	0	NA	intron (NM_001308293, intron 1 of 10)	AluSc|SINE|Alu	4550	NM_001308293	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
224380	chr9	8428401	8428730	+	0	NA	intron (NM_130391, intron 21 of 31)	intron (NM_130391, intron 21 of 31)	305381	NM_130393	5789		NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|R-PTP-delta|RPTPDELTA	protein tyrosine phosphatase receptor type D	protein-coding
1502	chr1	2773771	2774430	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	26768	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
74065	chr15	52566671	52566830	+	0	NA	intron (NM_001306191, intron 3 of 5)	Charlie29a|DNA|hAT-Charlie	2082	NM_001330309	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
223653	chr8	144356401	144356750	+	0	NA	promoter-TSS (NM_001280561)	promoter-TSS (NM_001280561)	-966	NM_001280561	340393		NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
110859	chr19	2612221	2612800	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-18205	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
40633	chr11	64717971	64718780	+	0	NA	intron (NM_015080, intron 1 of 22)	intron (NM_015080, intron 1 of 22)	4822	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
135324	chr2	160353251	160353730	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	54392	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
192098	chr6	16699171	16699840	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	60679	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
22812	chr1	224623491	224624730	+	0	NA	intron (NM_152495, intron 1 of 5)	L1ME3Cz|LINE|L1	7793	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
149470	chr21	31729071	31729680	+	0	NA	intron (NM_001145444, intron 1 of 18)	intron (NM_001145444, intron 1 of 18)	2743	NM_001145445	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
87809	chr16	75564221	75564480	+	0	NA	Intergenic	L2a|LINE|L2	-2029	NM_007285	11345		NM_007285	ENSG00000034713	GABARAPL2	ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2	GABA type A receptor associated protein like 2	protein-coding
47077	chr12	575301	575500	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	11086	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
174286	chr4	38327951	38328250	+	0	NA	Intergenic	Intergenic	-38814	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
159471	chr3	14138171	14139880	+	0	NA	intron (NM_024334, intron 10 of 11)	intron (NM_024334, intron 10 of 11)	13973	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
76229	chr15	73940371	73940730	+	0	NA	intron (NM_005576, intron 1 of 6)	intron (NM_005576, intron 1 of 6)	-12302	NR_040068	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
223903	chr9	385821	386180	+	0	NA	intron (NM_001190458, intron 21 of 45)	intron (NM_001190458, intron 21 of 45)	-84291	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
74090	chr15	52783701	52784930	+	0	NA	intron (NM_004498, intron 1 of 1)	CpG	-3431	NR_073510	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
124037	chr19	55500451	55500550	+	0	NA	exon (NM_001195267, exon 11 of 13)	exon (NM_001195267, exon 11 of 13)	12064	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
167534	chr3	129310551	129311230	+	0	NA	Intergenic	Intergenic	-5381	NR_026991	339942		NM_001025468		H1-10-AS1	C3orf47|H1FX-AS1	H1-10 antisense RNA 1	ncRNA
151129	chr21	44892721	44893650	+	0	NA	intron (NM_001127491, intron 10 of 15)	intron (NM_001127491, intron 10 of 15)	-19282	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
28149	chr10	43454251	43454350	+	0	NA	intron (NM_001355444, intron 1 of 3)	AluSx|SINE|Alu	17189	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
114357	chr19	12331601	12332000	+	0	NA	intron (NM_001363608, intron 1 of 4)	intron (NM_001363608, intron 1 of 4)	1833	NM_001363608	147837		NM_145276	ENSG00000188868	ZNF563	-	zinc finger protein 563	protein-coding
180640	chr5	17118851	17118950	+	0	NA	Intergenic	Intergenic	37092	NR_162112	113218490		NR_162112		MIR10522	-	microRNA 10522	ncRNA
104748	chr17	81682771	81684850	+	0	NA	promoter-TSS (NM_004712)	promoter-TSS (NM_004712)	-13	NM_001040025	339231		NM_001040025	ENSG00000214087	ARL16	-	ADP ribosylation factor like GTPase 16	protein-coding
96126	chr17	39653151	39653250	+	0	NA	intron (NM_001165938, intron 1 of 13)	intron (NM_001165938, intron 1 of 13)	-12149	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
46487	chr11	128328371	128328530	+	0	NA	Intergenic	Intergenic	119684	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
211930	chr7	112462121	112462800	+	0	NA	intron (NR_120333, intron 7 of 11)	intron (NR_120333, intron 7 of 11)	10402	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
36419	chr11	4100001	4100200	+	0	NA	intron (NM_001033, intron 1 of 18)	intron (NM_001033, intron 1 of 18)	5301	NM_001033	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
62151	chr13	97028671	97029000	+	0	NA	Intergenic	Intergenic	-34105	NM_001346195	27199		NM_080818	ENSG00000165621	OXGR1	CAON2|GPR80|GPR99|P2RY15|P2Y15|aKGR	oxoglutarate receptor 1	protein-coding
31966	chr10	100736851	100736950	+	0	NA	intron (NM_001374303, intron 1 of 2)	intron (NM_001374303, intron 1 of 2)	1504	NM_001304569	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
52422	chr12	55810151	55810450	+	0	NA	intron (NM_033082, intron 1 of 10)	AluJb|SINE|Alu	7424	NM_033082	84324		NM_033082	ENSG00000205323	SARNP	CIP29|HCC1|HSPC316|THO1	SAP domain containing ribonucleoprotein	protein-coding
193509	chr6	30578771	30579130	+	0	NA	intron (NM_001090, intron 6 of 23).3	AluSg|SINE|Alu	-5382	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
82062	chr16	13918471	13918730	+	0	NA	Intergenic	MIRb|SINE|MIR	-1554	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
99244	chr17	49697671	49697830	+	0	NA	Intergenic	AluJo|SINE|Alu	10214	NM_001278784	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
199258	chr6	111850401	111851400	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	22171	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
88170	chr16	81709451	81710080	+	0	NA	exon (NM_198390, exon 21 of 21)	exon (NM_198390, exon 21 of 21)	44411	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
51931	chr12	53711671	53712030	+	0	NA	non-coding (NR_026554, exon 14 of 14)	non-coding (NR_026554, exon 14 of 14)	15602	NR_026554	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
55939	chr12	109946601	109946880	+	0	NA	TTS (NM_001330154)	TTS (NM_001330154)	46163	NM_032300	84260		NM_032300	ENSG00000139437	TCHP	TpMs	trichoplein keratin filament binding	protein-coding
189719	chr5	176532821	176533080	+	0	NA	intron (NM_014901, intron 1 of 10)	intron (NM_014901, intron 1 of 10)	4452	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
42094	chr11	67512421	67512880	+	0	NA	Intergenic	AluSc8|SINE|Alu	-4488	NM_001271849	10263		NM_005851	ENSG00000167797	CDK2AP2	DOC-1R|DOC1R|p14	cyclin dependent kinase 2 associated protein 2	protein-coding
64074	chr14	22566801	22567950	+	0	NA	intron (NM_001344, intron 2 of 2)	intron (NM_001344, intron 2 of 2)	-10313	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
90011	chr16	89887771	89888130	+	0	NA	intron (NM_014972, intron 5 of 17)	intron (NM_014972, intron 5 of 17)	14358	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
62858	chr13	110510021	110510280	+	0	NA	intron (NM_001846, intron 47 of 47)	intron (NM_001846, intron 47 of 47)	-1971	NR_046583	100874203		NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
76905	chr15	78005471	78005630	+	0	NA	intron (NM_144572, intron 10 of 12)	L1ME4a|LINE|L1	-11325	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
63338	chr13	114020851	114021300	+	0	NA	intron (NM_001320822, intron 9 of 23).2	intron (NM_001320822, intron 9 of 23).2	-46999	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
219188	chr8	66590971	66591380	+	0	NA	intron (NM_001144755, intron 8 of 14)	AluY|SINE|Alu	22043	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
144672	chr20	36306021	36306730	+	0	NA	promoter-TSS (NM_014902)	promoter-TSS (NM_014902)	36	NM_001365621	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
96313	chr17	39978971	39979200	+	0	NA	Intergenic	Intergenic	-1722	NM_002809	5709		NM_002809	ENSG00000108344	PSMD3	P58|RPN3|S3|TSTA2	proteasome 26S subunit, non-ATPase 3	protein-coding
80139	chr16	2084621	2084880	+	0	NA	intron (NM_001370404, intron 33 of 40)	intron (NM_001370404, intron 33 of 40)	5534	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
183029	chr5	73213651	73214200	+	0	NA	Intergenic	Intergenic	-11964	NR_134291	340090		NR_134291	ENSG00000287090	LOC340090	-	uncharacterized LOC340090	ncRNA
55288	chr12	103349151	103349250	+	0	NA	intron (NM_001099336, intron 4 of 5)	intron (NM_001099336, intron 4 of 5)	146768	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
215291	chr7	157275471	157276000	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-61269	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
35483	chr11	1510101	1510680	+	0	NA	Intergenic	Intergenic	-23611	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
11452	chr1	89855051	89855150	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	33161	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
134205	chr2	134583371	134583730	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	135450	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
34768	chr11	202871	203030	+	0	NA	TTS (NM_001098787)	TTS (NM_001098787)	4472	NM_001098787	51272		NM_016465	ENSG00000177951	BET1L	BET1L1|GOLIM3|GS15|HSPC197	Bet1 golgi vesicular membrane trafficking protein like	protein-coding
137364	chr2	196165871	196166230	+	0	NA	intron (NM_004226, intron 1 of 7)	intron (NM_004226, intron 1 of 7)	5528	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
175344	chr4	68498271	68498700	+	0	NA	TTS (NM_014058).2	TTS (NM_014058).2	51022	NM_014058	28983		NM_014058	ENSG00000087128	TMPRSS11E	DESC1|TMPRSS11E2	transmembrane serine protease 11E	protein-coding
216926	chr8	22721501	22721700	+	0	NA	intron (NM_001363233, intron 6 of 6)	intron (NM_001363233, intron 6 of 6)	-28120	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
81843	chr16	11585851	11586350	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	273	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
229849	chr9	126317521	126317800	+	0	NA	Intergenic	L1MC1|LINE|L1	-9169	NM_033446	89853		NM_033446	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
151272	chr21	45439071	45440030	+	0	NA	intron (NM_001379500, intron 2 of 41)	CpG	-14480	NR_027498	378832		NM_199175	ENSG00000183535	COL18A1-AS1	C21orf123|NCRNA00175|PRED80	COL18A1 antisense RNA 1	ncRNA
189687	chr5	176412601	176413350	+	0	NA	intron (NM_007097, intron 1 of 5)	intron (NM_007097, intron 1 of 5)	-2152	NM_001364126	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
158973	chr3	10254151	10254450	+	0	NA	intron (NM_014760, intron 2 of 7)	L2a|LINE|L2	5841	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
60974	chr13	46651101	46651500	+	0	NA	intron (NM_015116, intron 2 of 18)	(TTTTTG)n|Simple_repeat|Simple_repeat	98130	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
187489	chr5	142220371	142220530	+	0	NA	Intergenic	MIRc|SINE|MIR	97872	NR_131221	100642175		NR_131221		SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
131860	chr2	98699821	98700150	+	0	NA	intron (NM_012214, intron 2 of 15)	LTR64|LTR|ERV1	31147	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
103159	chr17	77424051	77424350	+	0	NA	intron (NM_001293696, intron 1 of 9)	MIRb|SINE|MIR	19123	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
210313	chr7	99472401	99473830	+	0	NA	intron (NM_001350999, intron 1 of 3)	CpG	223	NM_001351000	285989		NM_213603	ENSG00000198556	ZNF789	-	zinc finger protein 789	protein-coding
233157	chr9	137174321	137175050	+	0	NA	TTS (NM_013366)	TTS (NM_013366)	-2629	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
94911	chr17	31857371	31857530	+	0	NA	intron (NM_018405, intron 1 of 3)	intron (NM_018405, intron 1 of 3)	1512	NM_001330176	55352		NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
227930	chr9	94315601	94315800	+	0	NA	Intergenic	Intergenic	12944	NM_017561	54754		NM_017561	ENSG00000130950	NUTM2F	FAM22F|NUTMF	NUT family member 2F	protein-coding
206842	chr7	37354741	37355130	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	-1267	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
59727	chr13	29845521	29846080	+	0	NA	intron (NM_007106, intron 1 of 4)	intron (NM_007106, intron 1 of 4)	4817	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
192232	chr6	18596271	18596430	+	0	NA	intron (NR_149116, intron 4 of 7)	intron (NR_149116, intron 4 of 7)	24566	NR_030312	693125		NR_030312	ENSG00000207775	MIR548A1	MIRN548A1	microRNA 548a-1	ncRNA
212015	chr7	114918501	114918900	+	0	NA	Intergenic	Intergenic	-3454	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
11234	chr1	88889651	88890180	+	0	NA	intron (NM_001514, intron 1 of 6)	AluJo|SINE|Alu	1652	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
34539	chr10	132940371	132940730	+	0	NA	intron (NM_001200049, intron 4 of 57)	intron (NM_001200049, intron 4 of 57)	2020	NM_001200049	54777		NM_017609	ENSG00000171811	CFAP46	C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	cilia and flagella associated protein 46	protein-coding
214884	chr7	151407721	151407980	+	0	NA	intron (NM_001284261, intron 1 of 4)	AluSq|SINE|Alu	-1311	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
8475	chr1	40801451	40801550	+	0	NA	intron (NM_172163, intron 1 of 12)	L2a|LINE|L2	17713	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
41702	chr11	66644901	66645530	+	0	NA	intron (NM_002896, intron 3 of 3)	intron (NM_002896, intron 3 of 3)	6512	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
20874	chr1	202132551	202132880	+	0	NA	TTS (NM_138795)	TTS (NM_138795)	9798	NM_004767	9283		NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2|ETBRLP2	G protein-coupled receptor 37 like 1	protein-coding
162082	chr3	46884201	46884400	+	0	NA	intron (NM_001184744, intron 2 of 14)	intron (NM_001184744, intron 2 of 14)	2051	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
46039	chr11	122676521	122676830	+	0	NA	intron (NM_032873, intron 1 of 13)	AluJb|SINE|Alu	20953	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
184695	chr5	108760371	108760880	+	0	NA	intron (NR_146155, intron 1 of 19)	Tigger1|DNA|TcMar-Tigger	11677	NM_001308028	2241		NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding
157691	chr22	46357071	46357230	+	0	NA	non-coding (NR_104241, exon 10 of 10)	non-coding (NR_104241, exon 10 of 10)	21436	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
201956	chr6	151962171	151962530	+	0	NA	intron (NM_001385572, intron 4 of 6)	intron (NM_001385572, intron 4 of 6)	153243	NM_001328100	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
117611	chr19	22822671	22822850	+	0	NA	Intergenic	AluY|SINE|Alu	-9531	NM_001349726	646864		NM_001349726	ENSG00000268696	ZNF723	ZNF723P	zinc finger protein 723	protein-coding
49953	chr12	40146921	40148430	+	0	NA	Intergenic	LTR85a|LTR|Gypsy?	-8564	NR_146526	105369734		NR_146526		LINC02471	-	long intergenic non-protein coding RNA 2471	ncRNA
54050	chr12	75941851	75942150	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	89776	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
145380	chr20	41186471	41186830	+	0	NA	intron (NM_001384324, intron 4 of 4)	L1MB4|LINE|L1	17627	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
73511	chr15	43774101	43774550	+	0	NA	exon (NM_025165, exon 9 of 11)	exon (NM_025165, exon 9 of 11)	2641	NM_025165	80237		NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
155381	chr22	38310021	38310280	+	0	NA	intron (NM_152221, intron 2 of 10)	intron (NM_152221, intron 2 of 10)	7283	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
124128	chr19	55674451	55676200	+	0	NA	promoter-TSS (NM_001130072)	promoter-TSS (NM_001130072)	99	NM_001130072	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
200503	chr6	135565801	135566200	+	0	NA	intron (NR_152845, intron 2 of 4)	L1PA8|LINE|L1	68199	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
147690	chr20	62315601	62316000	+	0	NA	intron (NM_005560, intron 58 of 79)	intron (NM_005560, intron 58 of 79)	12803	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
14945	chr1	147649121	147649380	+	0	NA	intron (NR_136635, intron 8 of 9)	MER5A1|DNA|hAT-Charlie	21274	NR_136634	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
201606	chr6	149363171	149363530	+	0	NA	intron (NM_001369506, intron 2 of 7)	intron (NM_001369506, intron 2 of 7)	-36912	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
127914	chr2	46315351	46315450	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	17993	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
9106	chr1	45303261	45305150	+	0	NA	non-coding (NR_024270, exon 1 of 1)	non-coding (NR_024270, exon 1 of 1)	295	NR_024270	400752		NR_024270	ENSG00000281912	LINC01144	-	long intergenic non-protein coding RNA 1144	ncRNA
168557	chr3	146641001	146641380	+	0	NA	Intergenic	Intergenic	-34974	NM_001321245	389158		NM_001085420	ENSG00000231213	PLSCR5	-	phospholipid scramblase family member 5	protein-coding
210019	chr7	93431051	93431350	+	0	NA	intron (NM_001164737, intron 15 of 15)	intron (NM_001164737, intron 15 of 15)	51655	NR_030388	724023		NR_030388	ENSG00000208014	MIR653	MIRN653|hsa-mir-653|mir-653	microRNA 653	ncRNA
59915	chr13	30845351	30846050	+	0	NA	Intergenic	MER74A|LTR|ERVL	-36862	NR_103813	440132		NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA
83446	chr16	27317301	27317700	+	0	NA	intron (NM_001257997, intron 1 of 9)	intron (NM_001257997, intron 1 of 9)	3526	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
101100	chr17	64974711	64976580	+	0	NA	promoter-TSS (NR_026903)	promoter-TSS (NR_026903)	-60	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
204086	chr7	2104101	2104750	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-15373	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
60627	chr13	42328851	42329680	+	0	NA	Intergenic	L1MEd|LINE|L1	57113	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
232831	chr9	136740421	136740680	+	0	NA	intron (NR_160517, intron 2 of 3)	intron (NR_160517, intron 2 of 3)	2390	NR_160514	414332		NM_001001712	ENSG00000187922	LCN10	-	lipocalin 10	protein-coding
3540	chr1	16120421	16120680	+	0	NA	Intergenic	Intergenic	35519	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
22958	chr1	226060401	226060800	+	0	NA	Intergenic	Intergenic	-1231	NM_001379043	3020		NM_002107	ENSG00000163041	H3-3A	BRYLIB1|H3-3B|H3.3A|H3F3|H3F3A	H3.3 histone A	protein-coding
91689	chr17	6194001	6194230	+	0	NA	Intergenic	Intergenic	123501	NM_015253	23302		NM_015253	ENSG00000179314	WSCD1	-	WSC domain containing 1	protein-coding
95681	chr17	38414701	38416080	+	0	NA	Intergenic	Intergenic	-13074	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
159519	chr3	14418651	14419150	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	16294	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
119599	chr19	40749921	40752030	+	0	NA	promoter-TSS (NM_001353807)	promoter-TSS (NM_001353807)	-228	NM_004596	6626		NM_004596	ENSG00000077312	SNRPA	Mud1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding
232516	chr9	136311421	136311930	+	0	NA	Intergenic	Intergenic	-4774	NM_001291516	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
41348	chr11	65956501	65957500	+	0	NA	intron (NM_152762, intron 5 of 7)	intron (NM_152762, intron 5 of 7)	-4734	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
147946	chr20	62955801	62956800	+	0	NA	intron (NM_001302643, intron 2 of 13)	intron (NM_001302643, intron 2 of 13)	3591	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
230490	chr9	128242771	128243200	+	0	NA	intron (NM_001374269, intron 15 of 21)	intron (NM_001374269, intron 15 of 21)	1845	NR_029619	406978		NR_029619	ENSG00000207581	MIR199B	MIRN199B|mir-199b	microRNA 199b	ncRNA
13164	chr1	111757121	111757380	+	0	NA	intron (NM_007204, intron 2 of 10)	AluJo|SINE|Alu	1349	NM_007204	11218		NM_007204	ENSG00000064703	DDX20	DP103|GEMIN3	DEAD-box helicase 20	protein-coding
191550	chr6	11653271	11653430	+	0	NA	Intergenic	Intergenic	115601	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
50950	chr12	49534571	49535230	+	0	NA	Intergenic	Intergenic	-4130	NM_001314030	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
145234	chr20	38924071	38925050	+	0	NA	Intergenic	L2b|LINE|L2	-1857	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
197178	chr6	63442371	63442750	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-73880	NM_001385255	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
138706	chr2	213124401	213124600	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	25937	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
110912	chr19	2768771	2768930	+	0	NA	intron (NM_003021, intron 2 of 11)	MIR3|SINE|MIR	14423	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
150992	chr21	44351121	44352100	+	0	NA	Intergenic	Intergenic	-1991	NM_001320351	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
105431	chr17	82887021	82887380	+	0	NA	intron (NM_005993, intron 15 of 38)	L1ME1|LINE|L1	-47178	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
230761	chr9	128901901	128903750	+	0	NA	intron (NM_019594, intron 2 of 3)	intron (NM_019594, intron 2 of 3)	-18157	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
183323	chr5	76715401	76717130	+	0	NA	5' UTR (NM_001992, exon 1 of 2)	5' UTR (NM_001992, exon 1 of 2)	139	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
10045	chr1	58576251	58577180	+	0	NA	exon (NM_002353, exon 1 of 1)	exon (NM_002353, exon 1 of 1)	537	NM_002353	4070		NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor associated calcium signal transducer 2	protein-coding
107263	chr18	42025971	42026450	+	0	NA	intron (NM_002647, intron 13 of 24)	MIR3|SINE|MIR	70976	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
85150	chr16	46394371	46395650	+	0	NA	Intergenic	Intergenic	174087	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
7065	chr1	32010051	32010900	+	0	NA	Intergenic	Intergenic	-3393	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
36884	chr11	10735471	10736430	+	0	NA	Intergenic	Intergenic	-15296	NM_001346279	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
183247	chr5	76406021	76406300	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	2875	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
27613	chr10	32919771	32919930	+	0	NA	intron (NM_133376, intron 11 of 15)	intron (NM_133376, intron 11 of 15)	15708	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
110283	chr19	1823171	1823580	+	0	NA	intron (NR_152847, intron 2 of 3)	intron (NR_152847, intron 2 of 3)	1286	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
129824	chr2	72148401	72149130	+	0	NA	promoter-TSS (NM_001277742)	promoter-TSS (NM_001277742)	-903	NM_019885	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
58788	chr12	132759901	132761300	+	0	NA	intron (NM_015114, intron 1 of 12)	MER21B|LTR|ERVL	1232	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
78118	chr15	90319971	90320400	+	0	NA	Intergenic	Intergenic	29262	NR_028287	23766		NM_032568		GABARAPL3	ATG8D	GABA type A receptor associated protein like 3 (pseudogene)	pseudo
234769	chrX	23787301	23787930	+	0	NA	Intergenic	AluY|SINE|Alu	4457	NM_002970	6303		NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
104767	chr17	81701601	81702200	+	0	NA	3' UTR (NM_004712, exon 22 of 22)	3' UTR (NM_004712, exon 22 of 22)	-1467	NM_002949	6182		NM_002949	ENSG00000262814	MRPL12	5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12|bL12m	mitochondrial ribosomal protein L12	protein-coding
179245	chr4	174358751	174359050	+	0	NA	Intergenic	Intergenic	-64895	NR_036236	100423042		NR_036236	ENSG00000265846	MIR4276	-	microRNA 4276	ncRNA
237716	chrX	124830001	124830200	+	0	NA	intron (NM_001163279, intron 3 of 31)	LTR88a|LTR|Gypsy?	133717	NM_001163279	10178		NM_014253	ENSG00000009694	TENM1	ODZ1|ODZ3|TEN-M1|TEN1|TNM|TNM1|ten-1	teneurin transmembrane protein 1	protein-coding
75546	chr15	66838601	66838930	+	0	NA	Intergenic	Intergenic	117750	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
97604	chr17	44120071	44120530	+	0	NA	intron (NR_136415, intron 2 of 2)	intron (NR_136415, intron 2 of 2)	3341	NM_001015053	10014		NM_005474	ENSG00000108840	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
45847	chr11	119385951	119386050	+	0	NA	intron (NR_034160, intron 1 of 3)	L2|LINE|L2	4222	NR_034160	100499227		NR_034160		USP2-AS1	THY1-AS1|gLINC	USP2 antisense RNA 1	ncRNA
74579	chr15	60552721	60553230	+	0	NA	intron (NM_134261, intron 2 of 10)	MIRb|SINE|MIR	39551	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
84006	chr16	29457651	29458250	+	0	NA	non-coding (NR_037608, exon 4 of 11)	non-coding (NR_037608, exon 4 of 11)	-1963	NM_177552	6818		NM_003166	ENSG00000261052	SULT1A3	HAST|HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|ST1A5|STM|TL-PST	sulfotransferase family 1A member 3	protein-coding
218865	chr8	60520601	60521180	+	0	NA	intron (NM_001242644, intron 1 of 6)	AluJr|SINE|Alu	3903	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
81419	chr16	8680571	8680880	+	0	NA	intron (NM_020686, intron 1 of 15)	AluSz|SINE|Alu	6108	NM_020686	18		NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
85411	chr16	50313701	50314330	+	0	NA	exon (NM_001114, exon 23 of 26)	exon (NM_001114, exon 23 of 26)	21399	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
223115	chr8	143466671	143466830	+	0	NA	intron (NM_015117, intron 8 of 11)	intron (NM_015117, intron 8 of 11)	-36018	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
102339	chr17	75459851	75460350	+	0	NA	intron (NM_014738, intron 1 of 31)	intron (NM_014738, intron 1 of 31)	3465	NM_001351202	9772		NM_014738	ENSG00000177728	TMEM94	IDDCDF|KIAA0195	transmembrane protein 94	protein-coding
232337	chr9	135475071	135475250	+	0	NA	Intergenic	Intergenic	-2911	NR_038969	100506599		NR_038969	ENSG00000225361	PPP1R26-AS1	-	PPP1R26 antisense RNA 1	ncRNA
32346	chr10	102280101	102280500	+	0	NA	intron (NR_165087, intron 3 of 38)	intron (NR_165087, intron 3 of 38)	34768	NR_165088	8729		NM_004193	ENSG00000107862	GBF1	ARF1GEF|CMT2GG|CMTDI2|CMTDIA	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
19651	chr1	180235571	180235880	+	0	NA	intron (NM_033343, intron 1 of 5)	CpG-2007	5461	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
6773	chr1	30750801	30751450	+	0	NA	intron (NM_006762, intron 1 of 7)	intron (NM_006762, intron 1 of 7)	6649	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
229876	chr9	126497301	126497500	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-86896	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
228753	chr9	110149401	110149600	+	0	NA	intron (NM_147150, intron 8 of 9)	intron (NM_147150, intron 8 of 9)	23999	NM_001136562	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
78811	chr15	99562751	99562850	+	0	NA	Intergenic	L2b|LINE|L2	-2617	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
132080	chr2	101298701	101298900	+	0	NA	intron (NM_173647, intron 1 of 6)	L1ME4b|LINE|L1	9901	NM_173647	284996		NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
213382	chr7	135966551	135966900	+	0	NA	intron (NM_001128619, intron 1 of 3)	intron (NM_001128619, intron 1 of 3)	10634	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
105396	chr17	82749071	82749230	+	0	NA	intron (NM_022158, intron 5 of 5)	intron (NM_022158, intron 5 of 5)	-2915	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
116038	chr19	17199701	17200300	+	0	NA	intron (NM_004145, intron 24 of 39)	AluSx1|SINE|Alu	-15357	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
153127	chr22	23716821	23718150	+	0	NA	promoter-TSS (NR_024448)	promoter-TSS (NR_024448)	-62	NR_024448	91316		NR_024448	ENSG00000228315	GUSBP11	-	GUSB pseudogene 11	pseudo
197062	chr6	53650971	53651500	+	0	NA	3' UTR (NM_001003760, exon 3 of 3)	3' UTR (NM_001003760, exon 3 of 3)	14521	NM_001003760	401265		NM_001003760	ENSG00000124743	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch like family member 31	protein-coding
80906	chr16	3732251	3732500	+	0	NA	intron (NM_004380, intron 28 of 30)	intron (NM_004380, intron 28 of 30)	-14851	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
120443	chr19	44401201	44401680	+	0	NA	intron (NM_001291491, intron 1 of 2)	intron (NM_001291491, intron 1 of 2)	168	NM_001291489	26974		NM_152354	ENSG00000267508	ZNF285	ZNF285A	zinc finger protein 285	protein-coding
96235	chr17	39798951	39799450	+	0	NA	intron (NM_001257408, intron 2 of 6)	MER5A|DNA|hAT-Charlie	-20975	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
239486	chrY	56747121	56747800	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-206795	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
152489	chr22	20909871	20910430	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-7257	NR_156180	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
83628	chr16	28275901	28276480	+	0	NA	Intergenic	Intergenic	-16335	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
22241	chr1	212611551	212611650	+	0	NA	intron (NM_001206484, intron 2 of 4)	intron (NM_001206484, intron 2 of 4)	2839	NM_001206484	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
104510	chr17	81230321	81231130	+	0	NA	intron (NM_144679, intron 10 of 11)	intron (NM_144679, intron 10 of 11)	2018	NR_135654	105371925		NR_135654		LOC105371925	-	uncharacterized LOC105371925	ncRNA
126358	chr2	27432921	27433180	+	0	NA	intron (NM_013392, intron 1 of 17)	AluSx|SINE|Alu	4419	NM_001321362	29959		NM_013392	ENSG00000115216	NRBP1	BCON3|MADM|MUDPNP|NRBP	nuclear receptor binding protein 1	protein-coding
218951	chr8	61003451	61003750	+	0	NA	Intergenic	Intergenic	-35852	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
214011	chr7	143250401	143251400	+	0	NA	intron (NM_001363538, intron 8 of 11)	L1MA7|LINE|L1	-12529	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
228904	chr9	113012021	113012500	+	0	NA	promoter-TSS (NM_001101338)	promoter-TSS (NM_001101338)	-68	NM_001101338	169834		NM_001101338	ENSG00000228623	ZNF883	-	zinc finger protein 883	protein-coding
125523	chr2	12828451	12828550	+	0	NA	Intergenic	AluY|SINE|Alu	91133	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
55106	chr12	98508301	98508700	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4645	NR_038383	643770		NR_038383	ENSG00000245017	LINC02453	-	long intergenic non-protein coding RNA 2453	ncRNA
58123	chr12	124893651	124894480	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	20585	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
132201	chr2	102003621	102004100	+	0	NA	intron (NR_048564, intron 1 of 8)	(TCTGTG)n|Simple_repeat|Simple_repeat	4899	NR_048564	7850		NM_004633	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor type 2	protein-coding
86282	chr16	58604671	58605280	+	0	NA	intron (NM_206999, intron 1 of 30)	AluY|SINE|Alu	24851	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
185706	chr5	132011101	132012530	+	0	NA	promoter-TSS (NM_001205251)	promoter-TSS (NM_001205251)	2	NM_001205248	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
111563	chr19	4053301	4053500	+	0	NA	intron (NM_015898, intron 2 of 2)	(GTGT)n|Simple_repeat|Simple_repeat	12129	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
42324	chr11	68478251	68478980	+	0	NA	intron (NM_001352362, intron 2 of 24)	intron (NM_001352362, intron 2 of 24)	17863	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
110666	chr19	2254901	2255100	+	0	NA	intron (NM_144616, intron 2 of 6)	MIRb|SINE|MIR	1417	NM_144616	126306		NM_144616	ENSG00000167476	JSRP1	JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding
155887	chr22	39519301	39521930	+	0	NA	promoter-TSS (NM_001675)	promoter-TSS (NM_001675)	51	NM_182810	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
107686	chr18	49441621	49441950	+	0	NA	intron (NM_001374431, intron 1 of 16)	intron (NM_001374431, intron 1 of 16)	18860	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
70492	chr14	102091221	102091850	+	0	NA	intron (NM_001017963, intron 2 of 11)	AluSz|SINE|Alu	-4491	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
228654	chr9	107257651	107258050	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-25429	NM_002874	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
218601	chr8	55990671	55991290	+	0	NA	intron (NM_002350, intron 10 of 12)	intron (NM_002350, intron 10 of 12)	82921	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
210160	chr7	98279301	98279700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2186	NM_001159491	25798		NM_015379	ENSG00000164713	BRI3	I3	brain protein I3	protein-coding
69863	chr14	99270621	99271350	+	0	NA	intron (NM_022898, intron 1 of 2)	CpG	1212	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
207180	chr7	43614301	43614500	+	0	NA	intron (NR_135582, intron 6 of 6)	intron (NR_135582, intron 6 of 6)	31292	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
237133	chrX	106802401	106803130	+	0	NA	promoter-TSS (NM_017752)	promoter-TSS (NM_017752)	92	NM_198881	54885		NM_017752	ENSG00000133138	TBC1D8B	GRAMD8B|NPHS20	TBC1 domain family member 8B	protein-coding
186216	chr5	134380821	134381700	+	0	NA	intron (NM_003337, intron 4 of 5)	AluJr4|SINE|Alu	9691	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
173418	chr4	8191321	8191930	+	0	NA	Intergenic	Intergenic	-7665	NR_134639	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
71608	chr14	106656101	106656300	+	0	NA	Intergenic	MER65A|LTR|ERV1	173761	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
204534	chr7	4830051	4830400	+	0	NA	intron (NM_018059, intron 5 of 14)	intron (NM_018059, intron 5 of 14)	7225	NR_145804	109623455		NR_145804		SNORD165	-	small nucleolar RNA, C/D box 165	snoRNA
155506	chr22	38681371	38682530	+	0	NA	promoter-TSS (NM_020243)	promoter-TSS (NM_020243)	-7	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
105368	chr17	82652451	82652750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4156	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
116974	chr19	18874251	18874550	+	0	NA	intron (NM_021267, intron 6 of 7)	AluJb|SINE|Alu	21758	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
150485	chr21	42670721	42671080	+	0	NA	intron (NM_001001580, intron 1 of 13)	L1MC5a|LINE|L1	17148	NM_001001580	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
149335	chr21	29054521	29055650	+	0	NA	TTS (NM_001001992)	TTS (NM_001001992)	18563	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
114300	chr19	11797431	11797850	+	0	NA	promoter-TSS (NM_152356)	promoter-TSS (NM_152356)	-883	NM_152356	126069		NM_152356	ENSG00000177599	ZNF491	-	zinc finger protein 491	protein-coding
29963	chr10	73623151	73623450	+	0	NA	intron (NM_001350995, intron 1 of 21)	AluJr4|SINE|Alu	2681	NM_001350995	159195		NM_152586	ENSG00000166348	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
17908	chr1	160194051	160194150	+	0	NA	intron (NM_001231, intron 3 of 10)	(CA)n|Simple_repeat|Simple_repeat	3525	NM_001231	844		NM_001231	ENSG00000143318	CASQ1	CASQ|CSQ1|PDIB1|VMCQA	calsequestrin 1	protein-coding
3152	chr1	12595021	12595980	+	0	NA	intron (NM_004753, intron 1 of 5)	intron (NM_004753, intron 1 of 5)	1113	NM_001324370	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
182691	chr5	68141171	68142050	+	0	NA	Intergenic	MER57E1|LTR|ERV1	-48266	NR_105003	102467655		NR_105003	ENSG00000253787	LINC02219	-	long intergenic non-protein coding RNA 2219	ncRNA
8427	chr1	40531051	40532050	+	0	NA	promoter-TSS (NM_152373)	promoter-TSS (NM_152373)	-87	NM_152373	127396		NM_152373	ENSG00000117010	ZNF684	-	zinc finger protein 684	protein-coding
173685	chr4	15373301	15373500	+	0	NA	intron (NM_001135170, intron 1 of 2)	MLT1A1|LTR|ERVL-MaLR	-1151	NM_001135171	114905		NM_031911	ENSG00000163145	C1QTNF7	CTRP7|ZACRP7	C1q and TNF related 7	protein-coding
113212	chr19	8456201	8456700	+	0	NA	intron (NM_001297418, intron 2 of 13)	intron (NM_001297418, intron 2 of 13)	11475	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
147979	chr20	62990151	62990250	+	0	NA	Intergenic	Intergenic	16764	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
153292	chr22	24169621	24170550	+	0	NA	intron (NM_012295, intron 33 of 36)	intron (NM_012295, intron 33 of 36)	-11402	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
126671	chr2	29196701	29197200	+	0	NA	intron (NM_004304, intron 27 of 28)	intron (NM_004304, intron 27 of 28)	26950	NM_001353765	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
211637	chr7	106114601	106115150	+	0	NA	Intergenic	Intergenic	-2299	NM_001381918	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
150618	chr21	43378721	43378980	+	0	NA	Intergenic	Intergenic	-16501	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
113983	chr19	10825871	10826230	+	0	NA	intron (NM_001005362, intron 17 of 19)	AluJo|SINE|Alu	-2923	NR_106851	102466737		NR_106851	ENSG00000275640	MIR6793	hsa-mir-6793	microRNA 6793	ncRNA
110698	chr19	2291821	2292350	+	0	NA	intron (NM_001101391, intron 1 of 1)	AluJo|SINE|Alu	-9910	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
90640	chr17	1661621	1662200	+	0	NA	exon (NM_006445, exon 25 of 43)	exon (NM_006445, exon 25 of 43)	-12044	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
180947	chr5	34958101	34958300	+	0	NA	3' UTR (NM_001348420, exon 12 of 12)	3' UTR (NM_001348420, exon 12 of 12)	28641	NM_001348420	134218		NM_194283	ENSG00000168724	DNAJC21	BMFS3|DNAJA5|GS3|JJJ1	DnaJ heat shock protein family (Hsp40) member C21	protein-coding
93979	chr17	21972951	21973250	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-229895	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
42968	chr11	73760221	73762530	+	0	NA	promoter-TSS (NM_001243718)	promoter-TSS (NM_001243718)	-301	NM_001243718	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
1169	chr1	2214971	2215130	+	0	NA	Intergenic	Intergenic	-2330	NM_001282670	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
123781	chr19	55112921	55114250	+	0	NA	intron (NM_017607, intron 1 of 21)	intron (NM_017607, intron 1 of 21)	4052	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
181138	chr5	38338551	38338650	+	0	NA	intron (NM_001205301, intron 2 of 22)	intron (NM_001205301, intron 2 of 22)	-47614	NR_046219	100852408		NR_046219	ENSG00000248730	EGFLAM-AS4	-	EGFLAM antisense RNA 4	ncRNA
80337	chr16	2466821	2467080	+	0	NA	non-coding (NR_135198, exon 1 of 1)	non-coding (NR_135198, exon 1 of 1)	1263	NR_135198	729652		NR_135198	ENSG00000259895	TEDC2-AS1	-	TEDC2 antisense RNA 1	ncRNA
102033	chr17	74859001	74859250	+	0	NA	intron (NM_001278553, intron 1 of 11)	L2c|LINE|L2	759	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
163315	chr3	50361121	50361650	+	0	NA	intron (NR_111912, intron 2 of 3)	AluJo|SINE|Alu	-1864	NM_007024	11070		NM_007024	ENSG00000126062	TMEM115	PL6	transmembrane protein 115	protein-coding
37227	chr11	14456151	14456450	+	0	NA	Intergenic	Intergenic	43511	NM_001144061	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
26304	chr10	14991271	14991730	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	32112	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
100335	chr17	59887951	59888050	+	0	NA	intron (NM_001193610, intron 2 of 7)	AluY|SINE|Alu	4943	NM_016261	51174		NM_016261	ENSG00000108423	TUBD1	TUBD	tubulin delta 1	protein-coding
57665	chr12	122750371	122750730	+	0	NA	Intergenic	AluY|SINE|Alu	-2274	NM_003677	8562		NM_003677	ENSG00000139726	DENR	DRP|DRP1|SMAP-3	density regulated re-initiation and release factor	protein-coding
77417	chr15	83438621	83438930	+	0	NA	Intergenic	Intergenic	-8453	NM_001324183	6457		NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3 domain containing GRB2 like 3, endophilin A3	protein-coding
66016	chr14	58261921	58262180	+	0	NA	intron (NR_038123, intron 5 of 9)	AluSx|SINE|Alu	17207	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
33209	chr10	113961301	113962880	+	0	NA	Intergenic	Intergenic	-81776	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
176775	chr4	102483771	102484730	+	0	NA	intron (NR_136202, intron 1 of 4)	LTR12C|LTR|ERV1	-17109	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
161862	chr3	45864971	45865530	+	0	NA	intron (NM_001276379, intron 2 of 9)	intron (NM_001276379, intron 2 of 9)	-21254	NM_001256369	10803		NM_006641	ENSG00000173585	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	C-C motif chemokine receptor 9	protein-coding
7799	chr1	36249251	36249850	+	0	NA	intron (NM_001321471, intron 2 of 12)	L2c|LINE|L2	25107	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
30794	chr10	84365451	84366250	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	37261	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
62410	chr13	99292071	99292480	+	0	NA	intron (NR_026644, intron 4 of 8)	AluY|SINE|Alu	15124	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
218739	chr8	58804551	58805730	+	0	NA	TTS (NM_014729)	TTS (NM_014729)	-145287	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
171154	chr3	195620701	195621100	+	0	NA	Intergenic	Intergenic	31259	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
234835	chrX	24464721	24466080	+	0	NA	5' UTR (NM_005391, exon 1 of 11)	5' UTR (NM_005391, exon 1 of 11)	114	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
57690	chr12	122845551	122845850	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	10243	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
24524	chr1	244832121	244832950	+	0	NA	Intergenic	L1ME3G|LINE|L1	-2771	NM_001312871	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
229972	chr9	126748001	126748200	+	0	NA	Intergenic	Intergenic	-56906	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
108633	chr18	76464471	76464630	+	0	NA	intron (NM_014643, intron 1 of 6)	intron (NM_014643, intron 1 of 6)	-27102	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
123063	chr19	51362901	51363380	+	0	NA	intron (NM_001985, intron 1 of 5)	L2a|LINE|L2	3248	NM_001985	2109		NM_001985	ENSG00000105379	ETFB	FP585|MADD	electron transfer flavoprotein subunit beta	protein-coding
231634	chr9	131592921	131593730	+	0	NA	intron (NM_001377935, intron 17 of 26)	intron (NM_001377935, intron 17 of 26)	47802	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
62211	chr13	98475571	98475730	+	0	NA	intron (NM_001286649, intron 2 of 9)	intron (NM_001286649, intron 2 of 9)	46475	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
187738	chr5	143583021	143583680	+	0	NA	Intergenic	Intergenic	-96510	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
34619	chr10	133282601	133283230	+	0	NA	intron (NM_001256618, intron 14 of 16)	intron (NM_001256618, intron 14 of 16)	-6047	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
216795	chr8	22541521	22542480	+	0	NA	TTS (NM_001243975)	TTS (NM_001243975)	-9927	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
44687	chr11	111378951	111380330	+	0	NA	promoter-TSS (NM_006235)	promoter-TSS (NM_006235)	-365	NM_006235	5450		NM_006235	ENSG00000110777	POU2AF1	BOB1|OBF-1|OBF1|OCAB	POU class 2 homeobox associating factor 1	protein-coding
33869	chr10	124412271	124412950	+	0	NA	intron (NM_001322965, intron 1 of 9)	AluJo|SINE|Alu	6313	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
57164	chr12	121351851	121353450	+	0	NA	promoter-TSS (NM_001330489)	promoter-TSS (NM_001330489)	-239	NM_016237	51433		NM_016237	ENSG00000089053	ANAPC5	APC5	anaphase promoting complex subunit 5	protein-coding
234381	chrX	15854171	15855800	+	0	NA	promoter-TSS (NM_001272071)	promoter-TSS (NM_001272071)	-172	NM_001368994	8905		NM_003916	ENSG00000182287	AP1S2	DC22|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B	adaptor related protein complex 1 subunit sigma 2	protein-coding
117861	chr19	32421951	32422250	+	0	NA	intron (NM_207325, intron 3 of 18)	L1M7|LINE|L1	15975	NM_207325	147991		NM_207325	ENSG00000178904	DPY19L3	-	dpy-19 like C-mannosyltransferase 3	protein-coding
100881	chr17	64369421	64369680	+	0	NA	intron (NM_000442, intron 5 of 15)	MIR|SINE|MIR	21310	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
133919	chr2	130353421	130353950	+	0	NA	Intergenic	Intergenic	-2371	NM_001142370	26469		NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase non-receptor type 18	protein-coding
203917	chr7	1510621	1511830	+	0	NA	Intergenic	Intergenic	-6836	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
56017	chr12	110358321	110358780	+	0	NA	Intergenic	L1ME3B|LINE|L1	43399	NM_001385210	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
176144	chr4	83145571	83146100	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-31106	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
163586	chr3	51964021	51964480	+	0	NA	intron (NM_020418, intron 1 of 12)	intron (NM_020418, intron 1 of 12)	-1358	NM_033010	57060		NM_020418	ENSG00000090097	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding
228248	chr9	97984301	97986900	+	0	NA	intron (NM_006401, intron 1 of 6)	intron (NM_006401, intron 1 of 6)	2259	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
136977	chr2	190441501	190441830	+	0	NA	intron (NM_001375987, intron 2 of 6)	L1MEc|LINE|L1	-27828	NM_001375994	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
206979	chr7	38316271	38316830	+	0	NA	Intergenic	Intergenic	-25027	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
98197	chr17	46123851	46124450	+	0	NA	intron (NM_015443, intron 2 of 14).2	FLAM_C|SINE|Alu	68632	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
25662	chr10	8360351	8361150	+	0	NA	Intergenic	Intergenic	-92445	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
161998	chr3	46374351	46374850	+	0	NA	3' UTR (NM_000579, exon 3 of 3)	3' UTR (NM_000579, exon 3 of 3)	4458	NM_001100168	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
6928	chr1	31666221	31666480	+	0	NA	intron (NM_001856, intron 52 of 70)	L2a|LINE|L2	-21474	NM_012392	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
193766	chr6	31351001	31352600	+	0	NA	Intergenic	Intergenic	3516	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
16189	chr1	153803251	153803350	+	0	NA	Intergenic	Intergenic	9353	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
114539	chr19	12865051	12865350	+	0	NA	intron (NM_014975, intron 14 of 25)	intron (NM_014975, intron 14 of 25)	12940	NR_106852	102466196		NR_106852	ENSG00000276181	MIR6794	hsa-mir-6794	microRNA 6794	ncRNA
177754	chr4	122632701	122633830	+	0	NA	intron (NR_104126, intron 7 of 10)	intron (NR_104126, intron 7 of 10)	-12199	NM_021803	59067		NM_021803	ENSG00000138684	IL21	CVID11|IL-21|Za11	interleukin 21	protein-coding
72696	chr15	38575171	38575550	+	0	NA	Intergenic	Intergenic	-10546	NM_005739	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
75758	chr15	68399371	68400230	+	0	NA	intron (NM_001004439, intron 2 of 29)	L1PA16|LINE|L1	32363	NM_001004439	22801		NM_012211	ENSG00000137809	ITGA11	HsT18964	integrin subunit alpha 11	protein-coding
119708	chr19	41133901	41134630	+	0	NA	Intergenic	AluSq2|SINE|Alu	19833	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
15326	chr1	149890251	149890930	+	0	NA	Intergenic	Intergenic	-2625	NM_175065	317772		NM_175065	ENSG00000184270	H2AC21	H2AB|HIST2H2AB	H2A clustered histone 21	protein-coding
84344	chr16	30200621	30201830	+	0	NA	non-coding (NR_037608, exon 7 of 11).2	non-coding (NR_037608, exon 7 of 11).2	1970	NM_001017390	445329		NM_001017389	ENSG00000213648	SULT1A4	HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|STM|TL-PST	sulfotransferase family 1A member 4	protein-coding
177903	chr4	129090651	129091000	+	0	NA	intron (NM_001300898, intron 1 of 5)	intron (NM_001300898, intron 1 of 5)	2714	NM_144643	132320		NM_144643	ENSG00000151466	SCLT1	CAP-1A|CAP1A	sodium channel and clathrin linker 1	protein-coding
93060	chr17	17484451	17484830	+	0	NA	intron (NM_018019, intron 1 of 1)	intron (NM_018019, intron 1 of 1)	7640	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
126727	chr2	30189501	30190480	+	0	NA	Intergenic	LTR10G|LTR|ERV1	2556	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
142391	chr20	3818251	3818850	+	0	NA	Intergenic	Intergenic	-1974	NM_001204446	55317		NM_018347	ENSG00000125843	AP5S1	C20orf29	adaptor related protein complex 5 subunit sigma 1	protein-coding
18303	chr1	161161801	161162630	+	0	NA	intron (NM_001319847, intron 3 of 12)	intron (NM_001319847, intron 3 of 12)	2715	NM_012475	27005		NM_012475	ENSG00000143258	USP21	USP16|USP23	ubiquitin specific peptidase 21	protein-coding
66228	chr14	61330471	61331080	+	0	NA	intron (NM_006255, intron 1 of 13)	MER102c|DNA|hAT-Charlie	9332	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
231733	chr9	131845501	131846030	+	0	NA	Intergenic	Intergenic	-105689	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
129079	chr2	65105401	65105900	+	0	NA	intron (NM_004161, intron 1 of 5)	intron (NM_004161, intron 1 of 5)	24456	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
117605	chr19	22052101	22053600	+	0	NA	intron (NM_001316998, intron 1 of 1)	intron (NM_001316998, intron 1 of 1)	366	NM_001316996	113835		NM_033468	ENSG00000197134	ZNF257	BMZF-4|BMZF4	zinc finger protein 257	protein-coding
56834	chr12	120233771	120234180	+	0	NA	intron (NM_001080855, intron 1 of 11)	Charlie16a|DNA|hAT-Charlie	16188	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
32004	chr10	100986921	100988180	+	0	NA	promoter-TSS (NM_001163814)	promoter-TSS (NM_001163814)	7	NM_001163813	56652		NM_021830	ENSG00000107815	TWNK	ATXN8|C10orf2|IOSCA|MTDPS7|PEO|PEO1|PEOA3|PRLTS5|SANDO|SCA8|TWINL	twinkle mtDNA helicase	protein-coding
108734	chr18	77096501	77097200	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	35933	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
159880	chr3	16848051	16848550	+	0	NA	Intergenic	Intergenic	-36655	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
198859	chr6	109379851	109380400	+	0	NA	intron (NM_001142401, intron 1 of 4)	intron (NM_001142401, intron 1 of 4)	1614	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
49459	chr12	25055851	25056180	+	0	NA	intron (NM_001204126, intron 1 of 19)	intron (NM_001204126, intron 1 of 19)	3309	NM_006152	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
149881	chr21	35840251	35840500	+	0	NA	Intergenic	Intergenic	-46070	NR_144547	54036		NR_144547		PPP1R2P2	-	protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2	pseudo
93095	chr17	17664571	17665200	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	12803	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
177653	chr4	121251201	121251600	+	0	NA	Intergenic	Intergenic	-23917	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
188091	chr5	150302551	150302650	+	0	NA	5' UTR (NM_001012301, exon 1 of 2)	5' UTR (NM_001012301, exon 1 of 2)	305	NM_001012301	340075		NM_001012301	ENSG00000183876	ARSI	ASI|SPG66	arylsulfatase family member I	protein-coding
71494	chr14	105998921	105999890	+	0	NA	Intergenic	Intergenic	-27136	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
152390	chr22	20532071	20532230	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	24103	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
117955	chr19	33248971	33250050	+	0	NA	Intergenic	Intergenic	-23660	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
112310	chr19	5890871	5891030	+	0	NA	TTS (NM_001193375)	TTS (NM_001193375)	12840	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
63682	chr14	21082421	21082680	+	0	NA	intron (NM_001278530, intron 15 of 22)	intron (NM_001278530, intron 15 of 22)	-11678	NM_001282211	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
233012	chr9	137014301	137014500	+	0	NA	exon (NM_001606, exon 27 of 49)	exon (NM_001606, exon 27 of 49)	-13064	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
189635	chr5	176043321	176043780	+	0	NA	Intergenic	Intergenic	18505	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
95666	chr17	38294571	38294730	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2373	NM_001278279	84311		NM_032351	ENSG00000278845	MRPL45	L45mt|MRP-L45|Mba1|mL45	mitochondrial ribosomal protein L45	protein-coding
106072	chr18	9116071	9116230	+	0	NA	intron (NM_021074, intron 1 of 7)	intron (NM_021074, intron 1 of 7)	13451	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
45725	chr11	119103851	119104150	+	0	NA	Intergenic	Intergenic	-2147	NM_001382	1798		NM_001382	ENSG00000172269	DPAGT1	ALG7|CDG-Ij|CDG1J|CMS13|CMSTA2|D11S366|DGPT|DPAGT|DPAGT2|G1PT|GPT|UAGT|UGAT	dolichyl-phosphate N-acetylglucosaminephosphotransferase 1	protein-coding
26046	chr10	12448451	12449780	+	0	NA	intron (NM_001351032, intron 3 of 11)	intron (NM_001351032, intron 3 of 11)	60133	NM_001351032	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
134211	chr2	134655951	134656480	+	0	NA	intron (NM_030923, intron 2 of 7)	L1PA2|LINE|L1	62785	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
208710	chr7	73302121	73302380	+	0	NA	TTS (NM_001168347)	TTS (NM_001168347)	6576	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
160278	chr3	25852221	25852800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	21185	NR_034055	285326		NR_034055	ENSG00000230891	LINC00692	-	long intergenic non-protein coding RNA 692	ncRNA
129373	chr2	68791671	68792130	+	0	NA	intron (NM_001364819, intron 4 of 10)	intron (NM_001364819, intron 4 of 10)	16990	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
321	chr1	981051	981550	+	0	NA	promoter-TSS (NM_001369898)	promoter-TSS (NM_001369898)	-127	NM_001369898	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
98029	chr17	45409301	45409800	+	0	NA	intron (NR_169601, intron 4 of 20)	L3|LINE|CR1	836	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
27533	chr10	32319421	32319880	+	0	NA	intron (NR_168508, intron 1 of 12)	L1MC4|LINE|L1	27508	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
78941	chr15	101269001	101269200	+	0	NA	Intergenic	Intergenic	8385	NM_018445	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
236238	chrX	65726771	65727400	+	0	NA	intron (NM_002444, intron 2 of 12)	intron (NM_002444, intron 2 of 12)	59431	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
121348	chr19	46819101	46819500	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	11404	NR_024258	100170220		NR_024258		SNAR-E	-	small NF90 (ILF3) associated RNA E	snRNA
183874	chr5	87273621	87274080	+	0	NA	intron (NM_022650, intron 1 of 24)	AluSx|SINE|Alu	4913	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
35238	chr11	839921	840500	+	0	NA	3' UTR (NM_021128, exon 2 of 2)	3' UTR (NM_021128, exon 2 of 2)	2319	NM_021128	5441		NM_021128	ENSG00000177700	POLR2L	RBP10|RPABC5|RPB10|RPB10beta|RPB7.6|hRPB7.6	RNA polymerase II, I and III subunit L	protein-coding
65107	chr14	42973051	42973150	+	0	NA	Intergenic	L1PA3|LINE|L1	1366244	NM_001330106	145581		NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
190984	chr6	3001801	3002430	+	0	NA	5' UTR (NM_001290221, exon 2 of 10)	5' UTR (NM_001290221, exon 2 of 10)	1957	NM_001318940	4835		NM_000904	ENSG00000124588	NQO2	DHQV|DIA6|NMOR2|QR2	N-ribosyldihydronicotinamide:quinone dehydrogenase 2	protein-coding
19709	chr1	181091751	181092250	+	0	NA	3' UTR (NM_016545, exon 1 of 1)	3' UTR (NM_016545, exon 1 of 1)	3300	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
212334	chr7	127408051	127408250	+	0	NA	Intergenic	AluJr|SINE|Alu	-15442	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
201780	chr6	149966401	149967530	+	0	NA	intron (NR_133659, intron 1 of 4)	ERV3-16A3_I-int|LTR|ERVL	3022	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
50448	chr12	47717251	47718150	+	0	NA	intron (NM_001172440, intron 1 of 7)	intron (NM_001172440, intron 1 of 7)	7790	NM_006025	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
69203	chr14	92677021	92677900	+	0	NA	intron (NM_024832, intron 8 of 9)	X7C_LINE|LINE|CR1	71167	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
212001	chr7	114086101	114086830	+	0	NA	non-coding (NR_033766, exon 1 of 20)	non-coding (NR_033766, exon 1 of 20)	138	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
186883	chr5	139549471	139549830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11516	NM_181838	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
102500	chr17	75762901	75763550	+	0	NA	intron (NM_001381985, intron 3 of 8)	intron (NM_001381985, intron 3 of 8)	1967	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
31981	chr10	100750471	100750830	+	0	NA	intron (NM_003987, intron 2 of 10)	intron (NM_003987, intron 2 of 10)	5068	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
45917	chr11	120805971	120806130	+	0	NA	intron (NM_001282473, intron 4 of 17)	MIR|SINE|MIR	13065	NR_133008	105369532		NR_133008		LOC105369532	-	uncharacterized LOC105369532	ncRNA
79007	chr16	19201	20080	+	0	NA	Intergenic	(ACCCTG)n|Simple_repeat|Simple_repeat	-2521	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
35989	chr11	2881371	2881530	+	0	NA	Intergenic	MIR3|SINE|MIR	4315	NM_000076	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
222054	chr8	130286201	130287150	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	9858	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
22440	chr1	220680071	220680430	+	0	NA	Intergenic	Intergenic	-10113	NM_024709	79762		NM_024709	ENSG00000162817	C1orf115	RDD1	chromosome 1 open reading frame 115	protein-coding
4549	chr1	22031171	22032450	+	0	NA	TTS (NR_023918)	TTS (NR_023918)	-5762	NR_110692	101928043		NR_110692	ENSG00000228397	LINC01635	-	long intergenic non-protein coding RNA 1635	ncRNA
73631	chr15	44662801	44665500	+	0	NA	promoter-TSS (NM_001160227)	promoter-TSS (NM_001160227)	-488	NM_025137	80208		NM_025137	ENSG00000104133	SPG11	ALS5|CMT2X|KIAA1840	SPG11 vesicle trafficking associated, spatacsin	protein-coding
156181	chr22	40240621	40242000	+	0	NA	intron (NM_015088, intron 1 of 20)	L1MC4|LINE|L1	63385	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
96042	chr17	39450721	39452100	+	0	NA	promoter-TSS (NM_004774)	promoter-TSS (NM_004774)	-147	NM_004774	5469		NM_004774	ENSG00000125686	MED1	CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2	mediator complex subunit 1	protein-coding
1838	chr1	6259621	6260600	+	0	NA	intron (NM_207370, intron 1 of 5)	CpG	988	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
132493	chr2	105989821	105990080	+	0	NA	Intergenic	LTR14B|LTR|ERVK	-75738	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
97105	chr17	42483621	42485050	+	0	NA	intron (NM_001378547, intron 9 of 19)	AluY|SINE|Alu	-10438	NR_049845	100847030		NR_049845	ENSG00000264314	MIR548AT	-	microRNA 548at	ncRNA
70560	chr14	102585201	102585600	+	0	NA	Intergenic	Intergenic	-7249	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
78778	chr15	99365371	99365530	+	0	NA	intron (NM_144598, intron 9 of 9)	intron (NM_144598, intron 9 of 9)	107925	NR_073383	7190		NR_073383	ENSG00000259706	HSP90B2P	GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1	heat shock protein 90 beta family member 2, pseudogene	pseudo
192150	chr6	16964901	16965200	+	0	NA	Intergenic	Intergenic	-137000	NM_001190766	401236		NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
122257	chr19	49036001	49036200	+	0	NA	promoter-TSS (NR_004383)	promoter-TSS (NR_004383)	795	NM_033377	114335		NM_033377	ENSG00000267631	CGB1	-	chorionic gonadotropin subunit beta 1	protein-coding
131610	chr2	96895571	96896430	+	0	NA	promoter-TSS (NM_001172667)	promoter-TSS (NM_001172667)	-838	NM_001172667	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
208567	chr7	72827501	72828800	+	0	NA	promoter-TSS (NM_001145440)	promoter-TSS (NM_001145440)	50	NM_001145440	441250		NM_001145440	ENSG00000277149	TYW1B	LINC00069|NCRNA00069|RSAFD2	tRNA-yW synthesizing protein 1 homolog B	protein-coding
30243	chr10	75034101	75034480	+	0	NA	Intergenic	Intergenic	12557	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
138569	chr2	207713971	207714350	+	0	NA	intron (NM_001330218, intron 1 of 9)	intron (NM_001330218, intron 1 of 9)	2520	NM_001330218	151195		NM_152523	ENSG00000163249	CCNYL1	-	cyclin Y like 1	protein-coding
123369	chr19	53896721	53897300	+	0	NA	intron (NM_001316329, intron 9 of 18)	L2c|LINE|L2	-12268	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
54589	chr12	92460121	92460380	+	0	NA	Intergenic	L2b|LINE|L2	-6429	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
38820	chr11	47297521	47297900	+	0	NA	intron (NR_164842, intron 23 of 33)	AluY|SINE|Alu	-25600	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
163807	chr3	52412071	52413100	+	0	NA	intron (NM_001321127, intron 1 of 10)	MIR|SINE|MIR	1925	NM_001278221	51533		NM_016483	ENSG00000010318	PHF7	HSPC045|HSPC226|NYD-SP6	PHD finger protein 7	protein-coding
231116	chr9	129826901	129827100	+	0	NA	TTS (NM_016520)	TTS (NM_016520)	-2864	NM_000113	1861		NM_000113	ENSG00000136827	TOR1A	AMC5|DQ2|DYT1	torsin family 1 member A	protein-coding
97498	chr17	43903371	43903600	+	0	NA	intron (NM_001278371, intron 1 of 11)	AluJb|SINE|Alu	-1923	NM_001278375	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
96554	chr17	40415121	40415800	+	0	NA	intron (NM_001067, intron 4 of 34)	intron (NM_001067, intron 4 of 34)	2436	NM_001067	7153		NM_001067	ENSG00000131747	TOP2A	TOP2|TOP2alpha|TOPIIA|TP2A	DNA topoisomerase II alpha	protein-coding
212280	chr7	123718921	123719380	+	0	NA	intron (NM_003941, intron 1 of 10)	L3|LINE|CR1	29853	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
55433	chr12	104518751	104520700	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	62777	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
70595	chr14	102776601	102779300	+	0	NA	intron (NM_001199427, intron 1 of 7)	CpG	471	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
205893	chr7	25115851	25116980	+	0	NA	Intergenic	Intergenic	8845	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
238186	chrX	136884851	136885150	+	0	NA	Intergenic	L2|LINE|L2	-4220	NR_028476	27316		NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|MRXSG|MRXSH|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein X-linked	protein-coding
52899	chr12	57215401	57216200	+	0	NA	promoter-TSS (NM_007224)	promoter-TSS (NM_007224)	-994	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
146180	chr20	48752371	48752530	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	75549	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
161966	chr3	46282671	46283080	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	40415	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
138680	chr2	213057851	213058350	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	92337	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
31792	chr10	98309571	98309800	+	0	NA	Intergenic	MIR3|SINE|MIR	-41491	NM_032211	84171		NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
124553	chr2	436521	436780	+	0	NA	Intergenic	Intergenic	56005	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
193798	chr6	31426071	31427200	+	0	NA	Intergenic	L1PA6|LINE|L1	-15032	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
157538	chr22	45434251	45434550	+	0	NA	Intergenic	Intergenic	20707	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
85210	chr16	47139471	47139830	+	0	NA	intron (NM_001201477, intron 1 of 8)	intron (NM_001201477, intron 1 of 8)	4295	NM_018092	81831		NM_018092	ENSG00000171208	NETO2	BTCL2|NEOT2	neuropilin and tolloid like 2	protein-coding
59845	chr13	30462971	30463130	+	0	NA	intron (NM_001370339, intron 3 of 4)	intron (NM_001370339, intron 3 of 4)	1277	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
143623	chr20	31741221	31741500	+	0	NA	intron (NM_012112, intron 1 of 17)	AluSx1|SINE|Alu	2070	NM_012112	22974		NM_012112	ENSG00000088325	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2 microtubule nucleation factor	protein-coding
191778	chr6	14124921	14125780	+	0	NA	intron (NM_001040280, intron 2 of 4)	MLT1K|LTR|ERVL-MaLR	7578	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
150868	chr21	44103421	44103880	+	0	NA	3' UTR (NM_001351709, exon 16 of 16)	3' UTR (NM_001351709, exon 16 of 16)	-3749	NM_005049	5822		NM_005049	ENSG00000241945	PWP2	EHOC-17|PWP2H|UTP1	PWP2 small subunit processome component	protein-coding
78258	chr15	90819771	90820300	+	0	NA	Intergenic	Intergenic	-48553	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
100014	chr17	57946471	57947180	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	8587	NM_001271875	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
15096	chr1	148528621	148529600	+	0	NA	Intergenic	CpG	-45808	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
171382	chr3	196144251	196145550	+	0	NA	intron (NR_034088, intron 2 of 2)	intron (NR_034088, intron 2 of 2)	2264	NR_034088	401109		NM_001001699	ENSG00000224652	LINC00885	-	long intergenic non-protein coding RNA 885	ncRNA
163301	chr3	50343921	50344430	+	0	NA	intron (NM_015896, intron 2 of 11)	intron (NM_015896, intron 2 of 11)	1557	NM_015896	51364		NM_015896	ENSG00000004838	ZMYND10	BLU|CILD22|DNAAF7|FLU	zinc finger MYND-type containing 10	protein-coding
14815	chr1	146284701	146285200	+	0	NA	Intergenic	HAL1|LINE|L1	-12823	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
163034	chr3	49815771	49815930	+	0	NA	Intergenic	AluJr|SINE|Alu	-1897	NM_003335	7318		NM_003335	ENSG00000182179	UBA7	D8|UBA1B|UBE1L|UBE2|UBE7	ubiquitin like modifier activating enzyme 7	protein-coding
13665	chr1	116560471	116561200	+	0	NA	promoter-TSS (NR_039621)	promoter-TSS (NR_039621)	-724	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
196540	chr6	44004421	44004730	+	0	NA	promoter-TSS (NR_125865)	promoter-TSS (NR_125865)	-925	NR_125865	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
199743	chr6	125790101	125791300	+	0	NA	promoter-TSS (NM_001122842)	promoter-TSS (NM_001122842)	-260	NM_001122842	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
106196	chr18	11553371	11553680	+	0	NA	Intergenic	Intergenic	-56033	NM_001282300	646000		NM_001282300	ENSG00000236396	SLC35G4	AMAC1L1|SLC35G4P	solute carrier family 35 member G4	protein-coding
178312	chr4	145481571	145482630	+	0	NA	promoter-TSS (NM_001003688)	promoter-TSS (NM_001003688)	-234	NM_001354811	4086		NM_005900	ENSG00000170365	SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
152738	chr22	21693451	21694230	+	0	NA	exon (NM_001317996, exon 16 of 21)	exon (NM_001317996, exon 16 of 21)	27828	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
99793	chr17	51242521	51242780	+	0	NA	intron (NM_017643, intron 2 of 16)	L1MC5a|LINE|L1	17399	NM_017643	54799		NM_017643	ENSG00000011258	MBTD1	SA49P01	mbt domain containing 1	protein-coding
206690	chr7	36504521	36505280	+	0	NA	Intergenic	LTR12|LTR|ERV1	95220	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
230083	chr9	127503721	127504780	+	0	NA	TTS (NM_001005374)	TTS (NM_001005374)	51995	NM_001005374	90678		NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
93325	chr17	18187751	18187850	+	0	NA	intron (NM_017758, intron 1 of 3)	intron (NM_017758, intron 1 of 3)	3972	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
129046	chr2	65058401	65058700	+	0	NA	intron (NM_015147, intron 1 of 6)	AluSq2|SINE|Alu	2134	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
5801	chr1	26563171	26563330	+	0	NA	intron (NM_001006665, intron 16 of 20)	AluJb|SINE|Alu	8708	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
47740	chr12	6496801	6497200	+	0	NA	intron (NM_014865, intron 2 of 31)	Tigger3b|DNA|TcMar-Tigger	2898	NM_014865	9918		NM_014865	ENSG00000010292	NCAPD2	CAP-D2|CNAP1|MCPH21|hCAP-D2	non-SMC condensin I complex subunit D2	protein-coding
13690	chr1	116737171	116738300	+	0	NA	Intergenic	Intergenic	-16695	NM_001328609	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
232385	chr9	135965521	135965980	+	0	NA	Intergenic	Intergenic	-4377	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
136808	chr2	181684921	181685180	+	0	NA	Intergenic	Intergenic	-4385	NR_146175	4760		NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|T2D|bHLHa3	neuronal differentiation 1	protein-coding
93473	chr17	18817771	18818080	+	0	NA	Intergenic	Intergenic	-17739	NR_164151	101929141		NR_164151	ENSG00000250111	LOC101929141	-	coiled-coil domain-containing protein 144A-like	pseudo
45652	chr11	119011001	119011200	+	0	NA	intron (NR_104050, intron 4 of 10).2	MER1B|DNA|hAT-Charlie	7243	NM_001028	6230		NM_001028	ENSG00000118181	RPS25	S25|eS25	ribosomal protein S25	protein-coding
9619	chr1	52406951	52407450	+	0	NA	intron (NM_032864, intron 2 of 9)	AluY|SINE|Alu	2598	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
125158	chr2	10031071	10031430	+	0	NA	Intergenic	Intergenic	12151	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
234506	chrX	19346201	19346400	+	0	NA	intron (NM_001173456, intron 1 of 9)	intron (NM_001173456, intron 1 of 9)	2373	NM_001173454	5160		NM_000284	ENSG00000131828	PDHA1	E1alpha|PDHA|PDHAD|PDHCE1A|PHE1A	pyruvate dehydrogenase E1 subunit alpha 1	protein-coding
159752	chr3	16266451	16266930	+	0	NA	intron (NM_001352980, intron 1 of 9)	intron (NM_001352980, intron 1 of 9)	1478	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
168682	chr3	150602701	150604530	+	0	NA	intron (NM_016275, intron 1 of 5)	CpG	294	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
199644	chr6	122033671	122033900	+	0	NA	Intergenic	Intergenic	-365766	NM_001135564	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
187390	chr5	141882071	141882300	+	0	NA	Intergenic	Intergenic	-3775	NM_002587	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
50626	chr12	48702771	48703780	+	0	NA	intron (NM_001240, intron 3 of 8)	AluYj4|SINE|Alu	13432	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
48225	chr12	8227121	8228000	+	0	NA	promoter-TSS (NM_018088)	promoter-TSS (NM_018088)	58	NM_001319982	55138		NM_018088	ENSG00000171847	FAM90A1	-	family with sequence similarity 90 member A1	protein-coding
149014	chr21	14539101	14539300	+	0	NA	intron (NM_001286523, intron 1 of 8)	intron (NM_001286523, intron 1 of 8)	7115	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
185569	chr5	131381901	131382800	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	118297	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
222440	chr8	135259551	135259650	+	0	NA	intron (NR_120396, intron 1 of 4)	L1PA2|LINE|L1	25469	NR_026706	286094		NR_026706	ENSG00000254083	LINC01591	-	long intergenic non-protein coding RNA 1591	ncRNA
155835	chr22	39411351	39411450	+	0	NA	intron (NM_153497, intron 1 of 10)	L1ME1|LINE|L1	11620	NM_153497	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
206946	chr7	38245571	38246450	+	0	NA	Intergenic	Intergenic	27637	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
33520	chr10	119211721	119212830	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	4704	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
10454	chr1	66285621	66285950	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-46323	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
143724	chr20	32287301	32287700	+	0	NA	intron (NM_004798, intron 1 of 8)	AluJr4|SINE|Alu	9849	NM_004798	9371		NM_004798	ENSG00000101350	KIF3B	FLA8|HH0048|KLP-11|OTSC12|RP89	kinesin family member 3B	protein-coding
53908	chr12	71640271	71640430	+	0	NA	intron (NM_144982, intron 6 of 34)	intron (NM_144982, intron 6 of 34)	23498	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
144395	chr20	35268101	35268300	+	0	NA	intron (NM_006690, intron 6 of 8)	LTR16A|LTR|ERVL	9922	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
112163	chr19	5642501	5642900	+	0	NA	intron (NM_001320572, intron 4 of 20)	AluSq|SINE|Alu	19617	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
200217	chr6	131442351	131442650	+	0	NA	Intergenic	HERVL74-int|LTR|ERVL	-130726	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
65309	chr14	50089051	50089550	+	0	NA	intron (NR_131171, intron 1 of 8)	MER1B|DNA|hAT-Charlie	15743	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
61301	chr13	50238371	50238530	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	66432	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
216822	chr8	22576551	22576650	+	0	NA	TTS (NM_001018003)	TTS (NM_001018003)	-2141	NM_021630	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
181894	chr5	54532021	54532280	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	14391	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
29469	chr10	70557471	70557630	+	0	NA	intron (NM_014431, intron 18 of 19)	intron (NM_014431, intron 18 of 19)	45191	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
130219	chr2	84717401	84717600	+	0	NA	intron (NM_001370, intron 58 of 76)	MIRb|SINE|MIR	163584	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
10232	chr1	63321151	63321450	+	0	NA	intron (NR_121634, intron 3 of 3)	CpG-1203	1158	NR_121634	100996301		NR_121634	ENSG00000230798	FOXD3-AS1	FAST|pasFOXD3	FOXD3 antisense RNA 1	ncRNA
161612	chr3	43218251	43218550	+	0	NA	Intergenic	Intergenic	-68112	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
107700	chr18	49510621	49510990	+	0	NA	Intergenic	Intergenic	-18340	NM_001199342	6139		NM_000985	ENSG00000265681	RPL17	L17|PD-1|RPL23|uL22	ribosomal protein L17	protein-coding
209594	chr7	77543271	77543430	+	0	NA	intron (NM_001131008, intron 1 of 17)	intron (NM_001131008, intron 1 of 17)	5307	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
185680	chr5	131759371	131759630	+	0	NA	intron (NM_133372, intron 1 of 17)	L1PA16|LINE|L1	37517	NM_001008738	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
61972	chr13	79451221	79452280	+	0	NA	Intergenic	Intergenic	-29374	NM_001161407	54602		NM_019080	ENSG00000102471	NDFIP2	N4WBP5A	Nedd4 family interacting protein 2	protein-coding
69726	chr14	98227251	98227950	+	0	NA	Intergenic	Intergenic	-249476	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
70829	chr14	103631751	103632050	+	0	NA	intron (NM_001130107, intron 1 of 15)	intron (NM_001130107, intron 1 of 15)	2712	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
173637	chr4	13524321	13524580	+	0	NA	Intergenic	MIRb|SINE|MIR	6967	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
86596	chr16	67278351	67280050	+	0	NA	promoter-TSS (NM_001129729)	promoter-TSS (NM_001129729)	53	NM_001129728	25894		NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
218488	chr8	51961371	51961530	+	0	NA	Intergenic	Intergenic	-62264	NM_001286782	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
211685	chr7	106604521	106604780	+	0	NA	Intergenic	Intergenic	56508	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
52525	chr12	56101551	56101980	+	0	NA	exon (NM_001982, exon 28 of 28)	exon (NM_001982, exon 28 of 28)	-2794	NM_006191	5036		NM_006191	ENSG00000170515	PA2G4	EBP1|HG4-1|ITAF45|p38-2G4	proliferation-associated 2G4	protein-coding
40704	chr11	64787471	64788830	+	0	NA	3' UTR (NM_001307990, exon 32 of 32)	3' UTR (NM_001307990, exon 32 of 32)	-9608	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
38569	chr11	46099871	46100300	+	0	NA	intron (NR_147890, intron 1 of 18)	intron (NR_147890, intron 1 of 18)	20734	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
215403	chr7	157513801	157514000	+	0	NA	Intergenic	Intergenic	47669	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
142897	chr20	17963501	17964080	+	0	NA	promoter-TSS (NR_003045)	promoter-TSS (NR_003045)	-844	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
21872	chr1	207713601	207713850	+	0	NA	intron (NM_175710, intron 10 of 11)	LTR28C|LTR|ERV1	-38313	NM_002389	4179		NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding
214005	chr7	143240551	143240950	+	0	NA	intron (NM_001363538, intron 8 of 11)	intron (NM_001363538, intron 8 of 11)	18713	NM_176882	259286		NM_176882	ENSG00000221937	TAS2R40	GPR60|T2R40|T2R58	taste 2 receptor member 40	protein-coding
224477	chr9	16179471	16180030	+	0	NA	Intergenic	Intergenic	96563	NM_001364979	100129385		NM_001271829	ENSG00000205549	LINC03041	C9orf92|Em:AL513424.1	long intergenic non-protein coding RNA 3041	ncRNA
43299	chr11	76203801	76204000	+	0	NA	intron (NM_004626, intron 1 of 4)	intron (NM_004626, intron 1 of 4)	2602	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
38738	chr11	46916421	46917500	+	0	NA	intron (NM_002334, intron 1 of 37)	intron (NM_002334, intron 1 of 37)	1590	NM_002334	4038		NM_002334	ENSG00000134569	LRP4	CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2	LDL receptor related protein 4	protein-coding
67643	chr14	73066351	73066850	+	0	NA	intron (NM_021239, intron 1 of 18)	AluSz|SINE|Alu	8066	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
132215	chr2	102234301	102234700	+	0	NA	intron (NM_003854, intron 10 of 11)	intron (NM_003854, intron 10 of 11)	47186	NM_001351446	8808		NM_003854	ENSG00000115598	IL1RL2	IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2	interleukin 1 receptor like 2	protein-coding
189552	chr5	174446571	174446730	+	0	NA	intron (NR_125806, intron 2 of 5)	intron (NR_125806, intron 2 of 5)	110296	NR_125806	101928176		NR_125806	ENSG00000249306	LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
193330	chr6	30184901	30185100	+	0	NA	3' UTR (NM_003449, exon 10 of 10).3	3' UTR (NM_003449, exon 10 of 10).3	21454	NM_033229	89870		NM_033229	ENSG00000204610	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
149387	chr21	31102951	31103450	+	0	NA	Intergenic	Intergenic	57740	NM_001353684	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
150437	chr21	42436821	42437280	+	0	NA	intron (NM_001243467, intron 9 of 11)	MLT1E3|LTR|ERVL-MaLR	33148	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
89084	chr16	88473521	88473780	+	0	NA	intron (NM_153813, intron 1 of 9)	CpG	4732	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
201852	chr6	150274121	150274380	+	0	NA	Intergenic	Intergenic	-94762	NM_203395	389434		NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
145499	chr20	43952651	43952950	+	0	NA	intron (NM_001098798, intron 1 of 7)	intron (NM_001098798, intron 1 of 7)	6904	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
155769	chr22	39233921	39234580	+	0	NA	intron (NM_033016, intron 2 of 6)	intron (NM_033016, intron 2 of 6)	6659	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
33671	chr10	119869471	119869880	+	0	NA	intron (NM_001256379, intron 1 of 15)	AluSq2|SINE|Alu	3168	NM_001256378	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
211418	chr7	105050621	105051000	+	0	NA	intron (NM_182931, intron 3 of 26)	AluSz6|SINE|Alu	36605	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
218615	chr8	56071071	56071230	+	0	NA	intron (NM_001146227, intron 4 of 5)	intron (NM_001146227, intron 4 of 5)	2751	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
16387	chr1	154404521	154406620	+	0	NA	5' UTR (NM_001382774, exon 1 of 9)	5' UTR (NM_001382774, exon 1 of 9)	227	NM_001382774	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
150896	chr21	44148251	44148580	+	0	NA	Intergenic	L2b|LINE|L2	11447	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
110816	chr19	2480971	2481200	+	0	NA	Intergenic	FLAM_C|SINE|Alu	4958	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
196273	chr6	42963371	42964080	+	0	NA	TTS (NM_001316313)	TTS (NM_001316313)	2971	NM_001318865	27232		NM_018960	ENSG00000124713	GNMT	HEL-S-182mP	glycine N-methyltransferase	protein-coding
98399	chr17	46568521	46568780	+	0	NA	intron (NM_001039083, intron 3 of 3).2	AluJb|SINE|Alu	11041	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
163978	chr3	53049871	53050030	+	0	NA	Intergenic	AluJb|SINE|Alu	-3877	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
88710	chr16	85903651	85904030	+	0	NA	intron (NM_002163, intron 2 of 8)	MIR|SINE|MIR	825	NM_001363908	3394		NM_002163	ENSG00000140968	IRF8	H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8	interferon regulatory factor 8	protein-coding
104889	chr17	81883901	81884100	+	0	NA	Intergenic	AluSc8|SINE|Alu	-6790	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
182538	chr5	65679301	65679500	+	0	NA	intron (NM_019072, intron 8 of 10)	AluSq2|SINE|Alu	42709	NM_019072	54557		NM_019072	ENSG00000197860	SGTB	SGT2	small glutamine rich tetratricopeptide repeat co-chaperone beta	protein-coding
234887	chrX	30651221	30651730	+	0	NA	Intergenic	Intergenic	-1884	NM_203391	2710		NM_000167	ENSG00000198814	GK	GK1|GKD	glycerol kinase	protein-coding
94841	chr17	31489301	31490850	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	1967	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
91876	chr17	7254221	7254480	+	0	NA	intron (NM_203413, intron 4 of 6)	MIR|SINE|MIR	1924	NR_145515	23587		NM_015362	ENSG00000170291	ELP5	C17orf81|DERP6|HSPC002|MST071|MSTP071	elongator acetyltransferase complex subunit 5	protein-coding
213154	chr7	131546371	131547100	+	0	NA	intron (NM_005397, intron 1 of 7)	AluSx1|SINE|Alu	9893	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
110531	chr19	2080801	2081000	+	0	NA	intron (NM_130807, intron 2 of 4)	AluJr|SINE|Alu	15426	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
48672	chr12	10552801	10553480	+	0	NA	promoter-TSS (NR_146455)	promoter-TSS (NR_146455)	-239	NR_146455	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
200030	chr6	129685251	129685580	+	0	NA	intron (NM_033515, intron 1 of 14)	AluSx1|SINE|Alu	24762	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
223101	chr8	143432271	143433630	+	0	NA	Intergenic	Intergenic	-2218	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
11555	chr1	91099901	91100380	+	0	NA	Intergenic	Intergenic	-77885	NM_032186	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
184372	chr5	97317821	97317900	+	0	NA	Intergenic	LTR12|LTR|ERV1	-134613	NM_001159749	55781		NM_018343	ENSG00000058729	RIOK2	RIO2	RIO kinase 2	protein-coding
172554	chr4	2404051	2404380	+	0	NA	intron (NM_020972, intron 1 of 12)	AluY|SINE|Alu	14430	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
135091	chr2	157336021	157336530	+	0	NA	Intergenic	Intergenic	-8563	NM_001009959	57471		NM_020711	ENSG00000136541	ERMN	JN|KIAA1189	ermin	protein-coding
75278	chr15	65055171	65055650	+	0	NA	intron (NM_016563, intron 4 of 4)	MIRb|SINE|MIR	10023	NM_178859	123264		NM_178859	ENSG00000186198	SLC51B	OSTB|OSTBETA|PBAM2|SLC51A1BP	SLC51 subunit beta	protein-coding
81913	chr16	11737671	11738030	+	0	NA	intron (NR_136674, intron 1 of 8)	AluSc8|SINE|Alu	5007	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
142436	chr20	3926621	3927150	+	0	NA	TTS (NM_001134338)	TTS (NM_001134338)	-9322	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
106168	chr18	9961121	9961450	+	0	NA	Intergenic	Intergenic	47269	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
193284	chr6	30037271	30037500	+	0	NA	intron (NR_145416, intron 3 of 6)	MER90a|LTR|ERV1	21347	NR_145417	80862		NR_026751	ENSG00000293508	POLR1HASP	C6orf12|HCG8|HCGVIII|HCGVIII-1|HTEX4|NCRNA00171|TCTEX4|ZNRD1-AS|ZNRD1-AS1|ZNRD1AS|ZNRD1AS1|ZNRD1ASP	POLR1H antisense, pseudogene	pseudo
117367	chr19	19560101	19560730	+	0	NA	Intergenic	Intergenic	22150	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
175271	chr4	67523201	67523800	+	0	NA	intron (NR_155754, intron 5 of 18)	L1MC3|LINE|L1	22003	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
147842	chr20	62792971	62794900	+	0	NA	Intergenic	Intergenic	-2538	NM_018270	55257		NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG domain binding protein	protein-coding
100387	chr17	60142651	60143450	+	0	NA	Intergenic	Intergenic	-6923	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
867	chr1	1623421	1623680	+	0	NA	exon (NM_001170686, exon 3 of 20)	exon (NM_001170686, exon 3 of 20)	7695	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
9937	chr1	54489001	54489850	+	0	NA	Intergenic	CpG	-58803	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
230389	chr9	128097651	128098630	+	0	NA	promoter-TSS (NM_052901)	promoter-TSS (NM_052901)	-342	NM_052901	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
94148	chr17	28342221	28342630	+	0	NA	exon (NM_021137, exon 6 of 7)	exon (NM_021137, exon 6 of 7)	6664	NM_021137	7126		NM_021137	ENSG00000109079	TNFAIP1	B12|B61|BTBD34|EDP1|hBACURD2	TNF alpha induced protein 1	protein-coding
227685	chr9	93002151	93002450	+	0	NA	intron (NM_001369951, intron 3 of 17)	intron (NM_001369951, intron 3 of 17)	12644	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
84383	chr16	30289901	30290100	+	0	NA	intron (NR_002453, intron 10 of 12)	AluJr|SINE|Alu	-41587	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
38493	chr11	45871321	45871650	+	0	NA	intron (NM_021117, intron 10 of 11)	L2a|LINE|L2	-14166	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
133780	chr2	127698771	127699080	+	0	NA	Intergenic	L2a|LINE|L2	-2572	NM_032740	84826		NM_032740	ENSG00000173349	SFT2D3	-	SFT2 domain containing 3	protein-coding
140875	chr2	237571571	237572300	+	0	NA	Intergenic	Intergenic	5361	NM_015893	51052		NM_015893	ENSG00000071677	PRLH	PRH|PRRP	prolactin releasing hormone	protein-coding
69522	chr14	96320771	96320930	+	0	NA	intron (NM_018036, intron 18 of 41)	intron (NM_018036, intron 18 of 41)	42491	NM_018036	55102		NM_018036	ENSG00000066739	ATG2B	BLTP4B|C14orf103	autophagy related 2B	protein-coding
87269	chr16	69994971	69995130	+	0	NA	intron (NR_003610, intron 18 of 25)	AluSx4|SINE|Alu	-35296	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
86792	chr16	67814451	67815100	+	0	NA	intron (NM_001288994, intron 2 of 10)	L2c|LINE|L2	7886	NM_001351158	55815		NM_018430	ENSG00000102904	TSNAXIP1	TXI1	translin associated factor X interacting protein 1	protein-coding
191495	chr6	11227621	11227880	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	4918	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
198698	chr6	108118401	108118930	+	0	NA	Intergenic	CpG	-4968	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
140340	chr2	232604671	232604930	+	0	NA	Intergenic	Intergenic	-1257	NM_001243252	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
230555	chr9	128422701	128423280	+	0	NA	intron (NM_016174, intron 2 of 12)	intron (NM_016174, intron 2 of 12)	2133	NM_016174	51148		NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
78035	chr15	90009521	90010000	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	3005	NR_036135	100422841		NR_036135	ENSG00000265871	MIR3174	-	microRNA 3174	ncRNA
157729	chr22	46576301	46578630	+	0	NA	intron (NM_001366660, intron 1 of 17)	CpG	377	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
150341	chr21	42125721	42126180	+	0	NA	intron (NM_173568, intron 16 of 21)	intron (NM_173568, intron 16 of 21)	-17416	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
208548	chr7	70716321	70716600	+	0	NA	intron (NM_015570, intron 6 of 18)	AluY|SINE|Alu	-415684	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
188873	chr5	159409851	159410030	+	0	NA	Intergenic	L1MB2|LINE|L1	56336	NR_027110	285627		NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
227418	chr9	89640271	89640430	+	0	NA	intron (NR_024280, intron 1 of 5)	intron (NR_024280, intron 1 of 5)	567	NR_024280	100129066		NR_024280	ENSG00000237372	LINC03062	-	long intergenic non-protein coding RNA 3062	ncRNA
61609	chr13	73596321	73596580	+	0	NA	Intergenic	L3|LINE|CR1	32206	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
189756	chr5	176621801	176622600	+	0	NA	intron (NM_003085, intron 4 of 5)	intron (NM_003085, intron 4 of 5)	7300	NR_036239	100422962		NR_036239	ENSG00000266329	MIR4281	-	microRNA 4281	ncRNA
197303	chr6	72522871	72523030	+	0	NA	Intergenic	Intergenic	-99114	NM_001160132	56479		NM_019842	ENSG00000185760	KCNQ5	Kv7.5|MRD46	potassium voltage-gated channel subfamily Q member 5	protein-coding
65601	chr14	52182951	52183050	+	0	NA	Intergenic	L1MD|LINE|L1	-84698	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
92946	chr17	17002821	17003150	+	0	NA	Intergenic	LTR16C|LTR|ERVL	14656	NR_146886	105371562		NR_146886	ENSG00000230969	LINC02090	-	long intergenic non-protein coding RNA 2090	ncRNA
225395	chr9	35044271	35044430	+	0	NA	exon (NM_001040412, exon 3 of 3)	exon (NM_001040412, exon 3 of 3)	2110	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
170017	chr3	180930901	180931300	+	0	NA	intron (NM_001013439, intron 2 of 17)	intron (NM_001013439, intron 2 of 17)	18429	NM_001363882	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
46764	chr11	129842171	129842330	+	0	NA	intron (NM_001331210, intron 2 of 6)	L1M4a1|LINE|L1	26402	NM_138788	120224		NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
139574	chr2	224945351	224945450	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	1649	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
134354	chr2	136134001	136134800	+	0	NA	Intergenic	Intergenic	-16251	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
6631	chr1	28921521	28921780	+	0	NA	intron (NM_001376013, intron 1 of 20)	intron (NM_001376013, intron 1 of 20)	7074	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
109875	chr19	1246621	1247250	+	0	NA	Intergenic	AluSp|SINE|Alu	-1618	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
86981	chr16	68210671	68211850	+	0	NA	intron (NM_173165, intron 9 of 9)	AluSc5|SINE|Alu	22239	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
158171	chr22	50214221	50214480	+	0	NA	intron (NM_031454, intron 5 of 8)	AluSq|SINE|Alu	13339	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
109340	chr19	608271	608630	+	0	NA	intron (NM_001194, intron 4 of 7)	intron (NM_001194, intron 4 of 7)	18569	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
121367	chr19	46853051	46853230	+	0	NA	Intergenic	MER96|DNA|hAT-Tip100	-2294	NM_001301078	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
103116	chr17	77374201	77375400	+	0	NA	intron (NM_001113493, intron 1 of 10)	intron (NM_001113493, intron 1 of 10)	-1283	NM_001113494	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
148170	chr20	63531621	63533150	+	0	NA	intron (NM_005975, intron 5 of 7)	(TG)n|Simple_repeat|Simple_repeat	4985	NM_001256358	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
22942	chr1	225980801	225981000	+	0	NA	Intergenic	Intergenic	18443	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
161809	chr3	45497751	45498650	+	0	NA	intron (NM_001368263, intron 13 of 20)	intron (NM_001368263, intron 13 of 20)	11345	NR_048543	100885795		NR_048543		LARS2-AS1	-	LARS2 antisense RNA 1	ncRNA
136670	chr2	180978851	180979200	+	0	NA	Intergenic	Intergenic	-1360	NM_001278555	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
115327	chr19	15112471	15113330	+	0	NA	intron (NM_033025, intron 7 of 7)	AluSz|SINE|Alu	5499	NM_001300910	85360		NM_033025	ENSG00000105137	SYDE1	7h3|SYD1	synapse defective Rho GTPase homolog 1	protein-coding
229788	chr9	125239621	125240000	+	0	NA	intron (NM_005347, intron 3 of 7)	AluSx1|SINE|Alu	1533	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
1395	chr1	2543221	2544880	+	0	NA	Intergenic	Intergenic	-12315	NM_001297605	8764		NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
203610	chr7	945071	945430	+	0	NA	intron (NM_001284308, intron 1 of 10)	intron (NM_001284308, intron 1 of 10)	566	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
236176	chrX	65595221	65595950	+	0	NA	Intergenic	Intergenic	-43164	NR_033742	83957		NM_032033	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
200854	chr6	138509471	138509630	+	0	NA	intron (NM_020464, intron 1 of 6)	intron (NM_020464, intron 1 of 6)	-10056	NM_001144060	57224		NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
115243	chr19	14519951	14520700	+	0	NA	intron (NM_001313964, intron 2 of 3)	intron (NM_001313964, intron 2 of 3)	-1928	NM_006145	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
73137	chr15	41337551	41338530	+	0	NA	intron (NM_001243144, intron 1 of 8)	AluSx1|SINE|Alu	5159	NM_018454	51203		NM_016359	ENSG00000137804	NUSAP1	ANKT|BM037|LNP|NUSAP|PRO0310p1|Q0310|SAPL	nucleolar and spindle associated protein 1	protein-coding
41352	chr11	65961101	65962730	+	0	NA	exon (NM_005146, exon 1 of 20)	exon (NM_005146, exon 1 of 20)	181	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
160136	chr3	20057021	20058150	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	17139	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
58298	chr12	130826051	130826680	+	0	NA	intron (NM_001980, intron 2 of 9)	intron (NM_001980, intron 2 of 9)	12885	NM_001351051	2054		NM_001980	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
98691	chr17	47889421	47890260	+	0	NA	Intergenic	AluSx|SINE|Alu	5976	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
8430	chr1	40612351	40612800	+	0	NA	Intergenic	LTR41B|LTR|ERVL	53107	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
62842	chr13	109788671	109789750	+	0	NA	Intergenic	Intergenic	-2627	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
48909	chr12	12565701	12566100	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3037	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
99438	chr17	50124471	50125050	+	0	NA	intron (NM_174920, intron 2 of 10)	intron (NM_174920, intron 2 of 10)	5400	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
170230	chr3	184183921	184184400	+	0	NA	TTS (NM_001311198)	TTS (NM_001311198)	-1915	NM_018358	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
44888	chr11	114403901	114404730	+	0	NA	intron (NM_016090, intron 3 of 4)	L2|LINE|L2	3649	NM_016090	10179		NM_016090	ENSG00000076053	RBM7	-	RNA binding motif protein 7	protein-coding
3204	chr1	13753651	13755200	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	5010	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
131917	chr2	98833271	98833950	+	0	NA	intron (NM_207362, intron 3 of 9)	intron (NM_207362, intron 3 of 9)	-61712	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
30284	chr10	75213971	75214130	+	0	NA	exon (NM_001184823, exon 4 of 10)	exon (NM_001184823, exon 4 of 10)	3896	NM_001184783	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
201919	chr6	151389401	151391200	+	0	NA	intron (NM_020861, intron 1 of 2)	CpG	1259	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
44181	chr11	96252421	96252950	+	0	NA	intron (NM_032427, intron 1 of 4)	MIR|SINE|MIR	-88753	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
42598	chr11	72079621	72081380	+	0	NA	promoter-TSS (NR_134858)	promoter-TSS (NR_134858)	42	NR_104476	4926		NM_006185	ENSG00000137497	NUMA1	NMP-22|NUMA	nuclear mitotic apparatus protein 1	protein-coding
64578	chr14	24692851	24693850	+	0	NA	Intergenic	MIRc|SINE|MIR	-59160	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
220336	chr8	98955421	98955880	+	0	NA	Intergenic	AluYg6|SINE|Alu	11208	NM_001142462	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
160614	chr3	31472771	31473100	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-59990	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
68119	chr14	75497171	75497930	+	0	NA	Intergenic	Intergenic	-24919	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
205071	chr7	6622601	6623050	+	0	NA	exon (NM_017560, exon 3 of 3)	exon (NM_017560, exon 3 of 3)	7215	NM_001353546	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
180892	chr5	34044871	34045430	+	0	NA	intron (NR_146599, intron 7 of 11)	intron (NR_146599, intron 7 of 11)	-1937	NM_030945	114899		NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and TNF related 3	protein-coding
115570	chr19	15812101	15812680	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-4264	NM_013940	26539		NM_013940	ENSG00000186723	OR10H1	-	olfactory receptor family 10 subfamily H member 1	protein-coding
138987	chr2	218293951	218294350	+	0	NA	intron (NM_015488, intron 2 of 9)	intron (NM_015488, intron 2 of 9)	-1573	NM_001321438	64114		NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
128064	chr2	47857871	47859150	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluSx|SINE|Alu	30209	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
103634	chr17	78751051	78751900	+	0	NA	intron (NM_017456, intron 1 of 12)	Tigger17a|DNA|TcMar-Tigger	-14573	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
154376	chr22	33922271	33922950	+	0	NA	promoter-TSS (NM_001378624)	promoter-TSS (NM_001378624)	-47	NM_001378627	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
208989	chr7	74217401	74218000	+	0	NA	intron (NM_032463, intron 4 of 13)	intron (NM_032463, intron 4 of 13)	7694	NM_014146	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
163850	chr3	52483871	52484030	+	0	NA	intron (NM_007184, intron 13 of 20)	intron (NM_007184, intron 13 of 20)	-11388	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
7756	chr1	36166121	36166430	+	0	NA	intron (NM_001286365, intron 1 of 15)	L2a|LINE|L2	10115	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
83745	chr16	28661871	28662030	+	0	NA	Intergenic	MIRb|SINE|MIR	23589	NM_001310136	728734		NM_001310136	ENSG00000255524	NPIPB8	-	nuclear pore complex interacting protein family member B8	protein-coding
192107	chr6	16715151	16715600	+	0	NA	intron (NM_000332, intron 3 of 8)	MIRb|SINE|MIR	44809	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
210056	chr7	95499621	95499950	+	0	NA	intron (NM_145872, intron 2 of 2)	L2a|LINE|L2	13842	NM_016116	51666		NM_016116	ENSG00000005981	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding
177115	chr4	108094271	108094500	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	72412	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
234702	chrX	20445021	20445900	+	0	NA	Intergenic	Intergenic	-178551	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
122200	chr19	48956401	48956700	+	0	NA	intron (NM_001291428, intron 4 of 5)	L2b|LINE|L2	1675	NM_138761	581		NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
159556	chr3	14803801	14804000	+	0	NA	intron (NR_135245, intron 1 of 2)	intron (NR_135245, intron 1 of 2)	7514	NR_135245	152274		NR_135245	ENSG00000260902	LINC02011	-	long intergenic non-protein coding RNA 2011	ncRNA
187529	chr5	142580021	142580850	+	0	NA	Intergenic	HAL1|LINE|L1	40899	NM_001257212	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
170384	chr3	184786521	184786930	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-13570	NR_110043	101928992		NR_110043	ENSG00000229433	LINC02069	-	long intergenic non-protein coding RNA 2069	ncRNA
101012	chr17	64712471	64713100	+	0	NA	Intergenic	Intergenic	-50478	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
61063	chr13	48300501	48301450	+	0	NA	intron (NR_046414, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	2727	NR_046414	100862704		NR_046414	ENSG00000231473	RB1-DT	LINC00441|ncRNA-RB1	RB1 divergent transcript	ncRNA
228267	chr9	98054751	98055280	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1717	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
174813	chr4	48130921	48131180	+	0	NA	intron (NM_003328, intron 1 of 14)	intron (NM_003328, intron 1 of 14)	3200	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
142879	chr20	17848451	17848750	+	0	NA	Intergenic	Intergenic	114346	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
71267	chr14	105216921	105217380	+	0	NA	intron (NM_145685, intron 11 of 13)	intron (NM_145685, intron 11 of 13)	30735	NM_145685	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
82600	chr16	18869451	18869950	+	0	NA	intron (NM_015092, intron 19 of 62)	intron (NM_015092, intron 19 of 62)	56708	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
232559	chr9	136357221	136358680	+	0	NA	intron (NM_001200003, intron 3 of 3)	intron (NM_001200003, intron 3 of 3)	3168	NM_001200003	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
198666	chr6	107847271	107847430	+	0	NA	Intergenic	AluJb|SINE|Alu	-23037	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
102557	chr17	75848351	75849250	+	0	NA	intron (NM_012478, intron 3 of 7)	intron (NM_012478, intron 3 of 7)	-4396	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
122081	chr19	48729771	48729930	+	0	NA	intron (NM_017805, intron 4 of 11)	AluSx1|SINE|Alu	-10125	NM_001130915	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
114728	chr19	13186101	13187000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	36139	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
108082	chr18	59969571	59969730	+	0	NA	Intergenic	CpG	69654	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
165195	chr3	72639751	72640050	+	0	NA	Intergenic	Intergenic	24349	NR_135531	105377162		NR_135531		LOC105377162	-	uncharacterized LOC105377162	ncRNA
224499	chr9	18442751	18443030	+	0	NA	Intergenic	Intergenic	-31263	NM_001040272	92949		NM_052866	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS like 1	protein-coding
26274	chr10	14841621	14841880	+	0	NA	intron (NM_016299, intron 3 of 13)	intron (NM_016299, intron 3 of 13)	3444	NM_001378785	100421372		NM_001378785	ENSG00000284024	MSANTD7	-	Myb/SANT DNA binding domain containing 7	protein-coding
103733	chr17	78865651	78866330	+	0	NA	intron (NM_003255, intron 3 of 4)	intron (NM_003255, intron 3 of 4)	-24551	NM_001385176	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
11448	chr1	89846171	89846750	+	0	NA	intron (NM_001134479, intron 2 of 2)	MIRb|SINE|MIR	24521	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
104253	chr17	80749251	80749550	+	0	NA	intron (NM_020761, intron 5 of 33)	intron (NM_020761, intron 5 of 33)	56232	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
197009	chr6	53316451	53317080	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	20852	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
160713	chr3	32416121	32416380	+	0	NA	intron (NM_138410, intron 1 of 4)	AluSp|SINE|Alu	24397	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
145477	chr20	43787771	43788280	+	0	NA	Intergenic	Intergenic	-61023	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
29593	chr10	71738351	71739050	+	0	NA	promoter-TSS (NM_001168390)	promoter-TSS (NM_001168390)	-850	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
33379	chr10	117442851	117443200	+	0	NA	Intergenic	Intergenic	-67585	NM_173791	118987		NM_173791	ENSG00000165650	PDZD8	IDDADF|PDZK8	PDZ domain containing 8	protein-coding
56140	chr12	111304601	111304800	+	0	NA	TTS (NR_106818)	TTS (NR_106818)	558	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
80882	chr16	3654001	3655150	+	0	NA	promoter-TSS (NM_001351825)	promoter-TSS (NM_001351825)	-129	NM_001351825	1773		NM_005223	ENSG00000213918	DNASE1	DNL1|DRNI	deoxyribonuclease 1	protein-coding
237759	chrX	129743721	129744280	+	0	NA	exon (NM_003399, exon 3 of 21)	exon (NM_003399, exon 3 of 21)	5021	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
220491	chr8	100502101	100503100	+	0	NA	Intergenic	Intergenic	57159	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
11626	chr1	91734521	91735380	+	0	NA	exon (NM_001195683, exon 5 of 17)	exon (NM_001195683, exon 5 of 17)	151201	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
107757	chr18	50374471	50375480	+	0	NA	promoter-TSS (NM_145060).2	promoter-TSS (NM_145060).2	-71	NM_145060	220134		NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
36913	chr11	10796881	10797730	+	0	NA	3' UTR (NM_001418, exon 22 of 22)	3' UTR (NM_001418, exon 22 of 22)	4303	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
33177	chr10	113050871	113051250	+	0	NA	intron (NM_001363501, intron 5 of 13)	intron (NM_001363501, intron 5 of 13)	5705	NR_132769	106635520		NR_132769		SNORA87	-	small nucleolar RNA, H/ACA box 87	snoRNA
216478	chr8	19758581	19759030	+	0	NA	promoter-TSS (NM_001354475)	promoter-TSS (NM_001354475)	-776	NR_148897	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
117348	chr19	19537121	19537700	+	0	NA	promoter-TSS (NM_153221)	promoter-TSS (NM_153221)	-855	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
133852	chr2	128283321	128283780	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	35318	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
182729	chr5	68261351	68261450	+	0	NA	intron (NM_181523, intron 2 of 15)	MIR3|SINE|MIR	-27119	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
155445	chr22	38466921	38467180	+	0	NA	Intergenic	AluJo|SINE|Alu	-1012	NM_016657	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
222830	chr8	142501101	142501600	+	0	NA	intron (NM_001702, intron 17 of 30)	(GGT)n|Simple_repeat|Simple_repeat	51701	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
106147	chr18	9616301	9617430	+	0	NA	intron (NR_110774, intron 1 of 2)	intron (NR_110774, intron 1 of 2)	1601	NR_110774	101927323		NR_110773	ENSG00000263627	PPP4R1-AS1	-	PPP4R1 antisense RNA 1	ncRNA
236149	chrX	63743671	63743830	+	0	NA	intron (NM_001369036, intron 1 of 10)	intron (NM_001369036, intron 1 of 10)	11373	NM_001353928	23229		NM_015185	ENSG00000131089	ARHGEF9	COLLYBISTIN|DEE8|EIEE8|HPEM-2|PEM-2|PEM2	Cdc42 guanine nucleotide exchange factor 9	protein-coding
154043	chr22	30573471	30573830	+	0	NA	promoter-TSS (NM_001318108)	promoter-TSS (NM_001318108)	-781	NM_001318109	9514		NM_004861	ENSG00000128242	GAL3ST1	CST	galactose-3-O-sulfotransferase 1	protein-coding
24216	chr1	236123601	236123850	+	0	NA	Intergenic	Intergenic	-18814	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
129097	chr2	65121801	65122300	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSx1|SINE|Alu	8056	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
317	chr1	978651	979200	+	0	NA	exon (NM_001291367, exon 3 of 5)	exon (NM_001291367, exon 3 of 5)	2248	NM_001369898	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
51454	chr12	52048901	52049400	+	0	NA	intron (NM_001202233, intron 2 of 7)	MER8|DNA|TcMar-Tigger	-2252	NM_002135	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
9986	chr1	55039551	55039850	+	0	NA	promoter-TSS (NR_110451)	promoter-TSS (NR_110451)	152	NM_174936	255738		NM_174936	ENSG00000169174	PCSK9	FH3|FHCL3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
77926	chr15	89317421	89317880	+	0	NA	TTS (NM_001376910)	TTS (NM_001376910)	9160	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
90835	chr17	2328751	2329250	+	0	NA	TTS (NR_003073)	TTS (NR_003073)	210	NR_003073	692208		NR_003073		SNORD91B	HBII-296b	small nucleolar RNA, C/D box 91B	snoRNA
51232	chr12	50776121	50776380	+	0	NA	intron (NM_005171, intron 1 of 6)	AluY|SINE|Alu	12149	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
39680	chr11	61701321	61701950	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	21244	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
236092	chrX	56783401	56783600	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-45916	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
26754	chr10	22706901	22707300	+	0	NA	intron (NM_005028, intron 1 of 9)	FLAM_C|SINE|Alu	7008	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
171639	chr3	197598801	197599600	+	0	NA	Intergenic	Intergenic	-25877	NM_203315	622		NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding
150525	chr21	42958801	42959400	+	0	NA	Intergenic	LTR26C|LTR|ERV1	-8086	NR_049889	100847013		NR_049889	ENSG00000264580	MIR5692B	-	microRNA 5692b	ncRNA
185987	chr5	133460271	133460430	+	0	NA	intron (NM_015082, intron 3 of 15)	intron (NM_015082, intron 3 of 15)	-32644	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
220760	chr8	102400201	102400400	+	0	NA	intron (NM_001282873, intron 1 of 58)	intron (NM_001282873, intron 1 of 58)	-12039	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
91366	chr17	4540671	4540830	+	0	NA	intron (NM_014520, intron 24 of 25)	intron (NM_014520, intron 24 of 25)	14634	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
219025	chr8	64685371	64685530	+	0	NA	intron (NM_004820, intron 1 of 5)	SVA_F|Retroposon|SVA	-103558	NR_152770	401463		NR_015374	ENSG00000254102	BHLHE22-AS1	-	BHLHE22 antisense RNA 1	ncRNA
97733	chr17	44378601	44378800	+	0	NA	exon (NM_000419, exon 19 of 30)	exon (NM_000419, exon 19 of 30)	10949	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
194052	chr6	31852271	31853180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	10096	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
55798	chr12	108664621	108665300	+	0	NA	intron (NM_014325, intron 3 of 10)	intron (NM_014325, intron 3 of 10)	29150	NR_039717	100616240		NR_039717	ENSG00000284388	MIR4496	-	microRNA 4496	ncRNA
198912	chr6	110039151	110040880	+	0	NA	Intergenic	Intergenic	61704	NM_005284	2830		NM_005284	ENSG00000146360	GPR6	-	G protein-coupled receptor 6	protein-coding
52656	chr12	56299291	56300930	+	0	NA	intron (NM_004077, intron 1 of 10)	CpG	220	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
12424	chr1	101453771	101454130	+	0	NA	Intergenic	Intergenic	130113	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
195208	chr6	36120171	36121730	+	0	NA	Intergenic	Intergenic	-9563	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
213715	chr7	140261451	140261950	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	84439	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
34311	chr10	132141271	132141630	+	0	NA	intron (NM_001323090, intron 10 of 23)	intron (NM_001323090, intron 10 of 23)	-45498	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
82479	chr16	17305771	17306080	+	0	NA	intron (NM_022166, intron 2 of 11)	intron (NM_022166, intron 2 of 11)	165035	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
4074	chr1	19071171	19071730	+	0	NA	Intergenic	Intergenic	-114774	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
198283	chr6	99822771	99823150	+	0	NA	Intergenic	Intergenic	-171078	NR_038384	728012		NR_038384	ENSG00000229315	MCHR2-AS1	-	MCHR2 antisense RNA 1	ncRNA
38075	chr11	35192921	35193500	+	0	NA	intron (NM_001202556, intron 5 of 7)	MER30|DNA|hAT-Charlie	30260	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
68317	chr14	77457151	77458800	+	0	NA	promoter-TSS (NM_001193316)	promoter-TSS (NM_001193316)	108	NM_001321441	10598		NM_012111	ENSG00000100591	AHSA1	AHA1|C14orf3|hAha1|p38	activator of HSP90 ATPase activity 1	protein-coding
94212	chr17	28603901	28604300	+	0	NA	intron (NR_040012, intron 2 of 2)	SVA_D|Retroposon|SVA	4967	NR_040012	100506436		NR_040012		SPAG5-AS1	-	SPAG5 antisense RNA 1	ncRNA
136999	chr2	190578271	190578880	+	0	NA	Intergenic	Intergenic	-43853	NR_136298	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
31596	chr10	97358551	97359550	+	0	NA	intron (NM_015179, intron 31 of 33)	intron (NM_015179, intron 31 of 33)	-24321	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
218153	chr8	41896751	41896850	+	0	NA	promoter-TSS (NM_001142446)	promoter-TSS (NM_001142446)	-59	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
206997	chr7	38344601	38345130	+	0	NA	intron (NR_040085, intron 1 of 3)	intron (NR_040085, intron 1 of 3)	3288	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
220517	chr8	100676471	100676630	+	0	NA	Intergenic	Intergenic	26474	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
178737	chr4	153084771	153085530	+	0	NA	Intergenic	Intergenic	-67013	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
191982	chr6	16159871	16160230	+	0	NA	Intergenic	Intergenic	18494	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
32192	chr10	101703251	101703580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8120	NM_001323541	6468		NM_022039	ENSG00000107829	FBXW4	DAC|FBW4|FBWD4|SHFM3|SHSF3	F-box and WD repeat domain containing 4	protein-coding
76500	chr15	74936171	74936330	+	0	NA	intron (NM_004255, intron 1 of 4)	AluSq2|SINE|Alu	1823	NM_004255	9377		NM_004255	ENSG00000178741	COX5A	COX|COX-VA|MC4DN20|VA	cytochrome c oxidase subunit 5A	protein-coding
21362	chr1	204989251	204989650	+	0	NA	intron (NM_001365986, intron 22 of 24)	intron (NM_001365986, intron 22 of 24)	45224	NM_001160331	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
191213	chr6	5619301	5619700	+	0	NA	intron (NM_001374875, intron 6 of 6)	intron (NM_001374875, intron 6 of 6)	75772	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
229294	chr9	120841221	120841700	+	0	NA	intron (NM_005047, intron 1 of 9)	AluY|SINE|Alu	1462	NM_001270427	5711		NM_005047	ENSG00000095261	PSMD5	S5B	proteasome 26S subunit, non-ATPase 5	protein-coding
168339	chr3	141876001	141878100	+	0	NA	intron (NM_001679, intron 1 of 6)	CpG	407	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
72859	chr15	40259351	40259450	+	0	NA	intron (NM_001128628, intron 3 of 10)	intron (NM_001128628, intron 3 of 10)	6222	NM_001276717	56924		NM_020168	ENSG00000137843	PAK6	PAK5	p21 (RAC1) activated kinase 6	protein-coding
73339	chr15	41989371	41990180	+	0	NA	intron (NM_001206670, intron 14 of 19)	intron (NM_001206670, intron 14 of 19)	17012	NR_120334	101928388		NR_120334	ENSG00000246740	PLA2G4E-AS1	-	PLA2G4E antisense RNA 1	ncRNA
113181	chr19	8404501	8405480	+	0	NA	TTS (NM_004218)	TTS (NM_004218)	-8313	NM_001005415	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
202473	chr6	158236871	158237030	+	0	NA	Intergenic	AluSg|SINE|Alu	68600	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
15113	chr1	148633951	148634580	+	0	NA	intron (NM_001364008, intron 2 of 4)	intron (NM_001364008, intron 2 of 4)	-38548	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
53162	chr12	57943121	57943380	+	0	NA	intron (NM_001320408, intron 1 of 5).2	MIRb|SINE|MIR	1683	NM_033276	91419		NM_033276	ENSG00000166896	ATP23	KUB3|XRCC6BP1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding
186259	chr5	134522901	134523550	+	0	NA	Intergenic	Intergenic	-1090	NM_001308143	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
50555	chr12	48054771	48055530	+	0	NA	intron (NM_001267594, intron 13 of 17)	intron (NM_001267594, intron 13 of 17)	-50103	NM_001354741	5213		NM_000289	ENSG00000152556	PFKM	ATP-PFK|GSD7|PFK-1|PFK-A|PFK1|PFKA|PFKX|PPP1R122	phosphofructokinase, muscle	protein-coding
228139	chr9	96782371	96782530	+	0	NA	Intergenic	L1MB3|LINE|L1	-4321	NM_014930	22869		NM_014930	ENSG00000081386	ZNF510	-	zinc finger protein 510	protein-coding
135873	chr2	170973221	170974400	+	0	NA	Intergenic	CpG	44557	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
61470	chr13	52302151	52302350	+	0	NA	Intergenic	L1M2c|LINE|L1	-32045	NR_120400	103191607		NR_120400	ENSG00000271564	LINC02333	-	long intergenic non-protein coding RNA 2333	ncRNA
168033	chr3	136906851	136907700	+	0	NA	intron (NM_001291999, intron 1 of 3)	L1MA4A|LINE|L1	-23227	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
19217	chr1	172531921	172534030	+	0	NA	promoter-TSS (NM_001282750)	promoter-TSS (NM_001282750)	-143	NM_001282751	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
163782	chr3	52390571	52390730	+	0	NA	intron (NM_015512, intron 60 of 77)	intron (NM_015512, intron 60 of 77)	19358	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
171701	chr3	197801771	197802630	+	0	NA	intron (NM_001365715, intron 1 of 20)	MLT1E2|LTR|ERVL-MaLR	10946	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
142846	chr20	17608821	17609080	+	0	NA	3' UTR (NM_001011546, exon 5 of 5)	3' UTR (NM_001011546, exon 5 of 5)	38875	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
148624	chr21	5602401	5603200	+	0	NA	Intergenic	Intergenic	33596	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
54247	chr12	82687501	82688580	+	0	NA	intron (NM_001320321, intron 1 of 10)	intron (NM_001320321, intron 1 of 10)	885	NM_001320322	160335		NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane O-mannosyltransferase targeting cadherins 2	protein-coding
136124	chr2	173954221	173954480	+	0	NA	intron (NM_001172712, intron 4 of 6)	MIR3|SINE|MIR	9530	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
147432	chr20	58902071	58902230	+	0	NA	intron (NM_000516, intron 3 of 12)	intron (NM_000516, intron 3 of 12)	9987	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
121861	chr19	48257471	48257780	+	0	NA	non-coding (NR_040599, exon 2 of 2)	non-coding (NR_040599, exon 2 of 2)	-1679	NM_001351787	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
193562	chr6	30628951	30629050	+	0	NA	intron (NM_001318763, intron 6 of 9).6	AluJo|SINE|Alu	2126	NM_001031722	79969		NM_024909	ENSG00000137343	ATAT1	C6orf134|MEC17|Nbla00487|TAT|alpha-TAT|alpha-TAT1	alpha tubulin acetyltransferase 1	protein-coding
40513	chr11	64279521	64280400	+	0	NA	intron (NM_032989, intron 2 of 3)	AluJr|SINE|Alu	4705	NM_032989	572		NM_004322	ENSG00000002330	BAD	BBC2|BCL2L8	BCL2 associated agonist of cell death	protein-coding
35055	chr11	597201	597750	+	0	NA	exon (NM_001286581, exon 8 of 18).2	exon (NM_001286581, exon 8 of 18).2	18475	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
196718	chr6	45062571	45063000	+	0	NA	intron (NM_001350327, intron 2 of 9)	L1PA2|LINE|L1	134985	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
115821	chr19	16470321	16470580	+	0	NA	intron (NM_021235, intron 1 of 22)	intron (NM_021235, intron 1 of 22)	1520	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
237931	chrX	132161521	132162030	+	0	NA	Intergenic	L1PA2|LINE|L1	-33755	NM_001306193	90167		NM_194277	ENSG00000165694	FRMD7	NYS|NYS1|XIPAN	FERM domain containing 7	protein-coding
128408	chr2	55230401	55231050	+	0	NA	intron (NM_001353781, intron 1 of 11)	L2-3_Crp|LINE|L2	-1178	NM_001135592	6233		NM_002954	ENSG00000143947	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80|eS31	ribosomal protein S27a	protein-coding
121605	chr19	47415351	47415650	+	0	NA	intron (NM_001009813, intron 4 of 12)	LTR33A_|LTR|ERVL	4027	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
173930	chr4	25378801	25379200	+	0	NA	intron (NM_013367, intron 2 of 28)	L2|LINE|L2	1737	NM_013367	29945		NM_013367	ENSG00000053900	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
124085	chr19	55632351	55633230	+	0	NA	Intergenic	Intergenic	-8212	NM_207115	51157		NM_016202	ENSG00000213015	ZNF580	-	zinc finger protein 580	protein-coding
154349	chr22	32528901	32529200	+	0	NA	intron (NM_133633, intron 9 of 11)	intron (NM_133633, intron 9 of 11)	53813	NM_001033024	25793		NM_012179	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
230632	chr9	128648121	128648850	+	0	NA	intron (NM_052844, intron 1 of 8)	(CCAAG)n|Simple_repeat|Simple_repeat	8365	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
122814	chr19	50386351	50388000	+	0	NA	intron (NR_046402, intron 1 of 25)	AluSx1|SINE|Alu	2828	NR_046402	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
125483	chr2	12486951	12487250	+	0	NA	intron (NR_110196, intron 4 of 5)	AluSx1|SINE|Alu	-229772	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
94724	chr17	30725351	30725450	+	0	NA	intron (NR_144394, intron 1 of 8)	L1MA9|LINE|L1	15792	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
180725	chr5	31530451	31530550	+	0	NA	intron (NM_001382508, intron 3 of 35)	intron (NM_001382508, intron 3 of 35)	1593	NM_001382508	29102		NM_013235	ENSG00000113360	DROSHA	ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN	drosha ribonuclease III	protein-coding
166672	chr3	120093501	120096130	+	0	NA	promoter-TSS (NM_002093)	promoter-TSS (NM_002093)	-368	NM_001146156	2932		NM_002093	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding
193475	chr6	30536251	30536680	+	0	NA	Intergenic	AluY|SINE|Alu	20199	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
121955	chr19	48474871	48475230	+	0	NA	intron (NM_017457, intron 8 of 11)	MIRc|SINE|MIR	5681	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
14540	chr1	144874101	144874300	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	156029	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
148723	chr21	7031971	7032280	+	0	NA	Intergenic	Intergenic	-16734	NM_001322036	102724951		NM_001322036	ENSG00000276077	LINC03105	-	long intergenic non-protein coding RNA 3105	ncRNA
67684	chr14	73143721	73144150	+	0	NA	intron (NM_007318, intron 1 of 11)	AluJr|SINE|Alu	7428	NM_007318	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
89043	chr16	88433201	88433600	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-19880	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
150847	chr21	44062421	44062700	+	0	NA	intron (NM_003274, intron 6 of 22)	L2a|LINE|L2	-11764	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
18061	chr1	160635201	160635800	+	0	NA	intron (NR_104400, intron 2 of 4)	intron (NR_104400, intron 2 of 4)	11544	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
59510	chr13	26980251	26980850	+	0	NA	Intergenic	Intergenic	-144983	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
48136	chr12	7905601	7906000	+	0	NA	Intergenic	Intergenic	-14604	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
152529	chr22	20977751	20977850	+	0	NA	intron (NM_144704, intron 15 of 20)	intron (NM_144704, intron 15 of 20)	-4497	NM_006767	8216		NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|NS2|SWNTS2	leucine zipper like post translational regulator 1	protein-coding
157723	chr22	46538421	46538900	+	0	NA	Intergenic	CpG-19239	-1040	NM_001378328	9620		NM_014246	ENSG00000075275	CELSR1	ADGRC1|CDHF9|FMI2|HFMI2|LMPHM9|ME2	cadherin EGF LAG seven-pass G-type receptor 1	protein-coding
36621	chr11	7359351	7359450	+	0	NA	intron (NM_175733, intron 3 of 6)	L1PA3|LINE|L1	106435	NR_103855	100506258		NR_103855	ENSG00000251364	SYT9-AS1	-	SYT9 antisense RNA 1	ncRNA
197309	chr6	72619571	72620550	+	0	NA	Intergenic	Intergenic	-2004	NM_001160132	56479		NM_019842	ENSG00000185760	KCNQ5	Kv7.5|MRD46	potassium voltage-gated channel subfamily Q member 5	protein-coding
188879	chr5	159456801	159457100	+	0	NA	intron (NR_027110, intron 4 of 6)	intron (NR_027110, intron 4 of 6)	9326	NR_027110	285627		NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
93512	chr17	19007101	19007300	+	0	NA	intron (NM_001270649, intron 9 of 13)	L1MD2|LINE|L1	-2436	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
179400	chr4	183797121	183797380	+	0	NA	promoter-TSS (NR_132761)	promoter-TSS (NR_132761)	-772	NR_132761	56977		NM_020225	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
62090	chr13	94595451	94596800	+	0	NA	promoter-TSS (NM_014305)	promoter-TSS (NM_014305)	27	NR_130731	23483		NM_014305	ENSG00000088451	TGDS	CATMANS|SDR2E1|TDPGD	TDP-glucose 4,6-dehydratase	protein-coding
44070	chr11	95444751	95445050	+	0	NA	Intergenic	Intergenic	-212425	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
162715	chr3	49009201	49009400	+	0	NA	intron (NM_001320547, intron 1 of 5)	intron (NM_001320547, intron 1 of 5)	1695	NM_001320547	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
123228	chr19	52921121	52921780	+	0	NA	intron (NM_001384653, intron 1 of 4)	intron (NM_001384653, intron 1 of 4)	1978	NM_001384652	388559		NM_001310127	ENSG00000213793	ZNF888	-	zinc finger protein 888	protein-coding
80277	chr16	2237371	2237530	+	0	NA	exon (NM_001301680, exon 5 of 7)	exon (NM_001301680, exon 5 of 7)	1006	NM_001301680	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
108382	chr18	69635301	69635750	+	0	NA	intron (NM_152721, intron 3 of 7)	intron (NM_152721, intron 3 of 7)	165594	NR_134579	105372179		NR_134579	ENSG00000293054	LOC105372179	-	uncharacterized LOC105372179	ncRNA
122381	chr19	49397901	49398980	+	0	NA	intron (NM_144688, intron 7 of 19)	AluJo|SINE|Alu	10191	NM_144688	147872		NM_144688	ENSG00000161609	KASH5	CCDC155|POF22|SPGF88	KASH domain containing 5	protein-coding
59973	chr13	32046421	32046680	+	0	NA	intron (NM_023037, intron 1 of 60)	intron (NM_023037, intron 1 of 60)	14776	NM_023037	10129		NM_023037	ENSG00000073910	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	FRY microtubule binding protein	protein-coding
67293	chr14	69460121	69460480	+	0	NA	3' UTR (NM_001252148, exon 6 of 6)	3' UTR (NM_001252148, exon 6 of 6)	-24428	NM_001161498	400224		NM_001161498	ENSG00000175985	PLEKHD1	UPF0639	pleckstrin homology and coiled-coil domain containing D1	protein-coding
82630	chr16	18983821	18984080	+	0	NA	promoter-TSS (NM_001160364)	promoter-TSS (NM_001160364)	16	NM_024847	79905		NM_024847	ENSG00000170537	TMC7	-	transmembrane channel like 7	protein-coding
103865	chr17	79743621	79744080	+	0	NA	Intergenic	MIR|SINE|MIR	12907	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
77097	chr15	78923471	78923630	+	0	NA	intron (NM_001319137, intron 11 of 12)	AluSx|SINE|Alu	21496	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
43649	chr11	85652951	85653450	+	0	NA	intron (NM_032273, intron 2 of 4)	L2c|LINE|L2	5233	NM_032273	84233		NM_032273	ENSG00000171202	TMEM126A	OPA7	transmembrane protein 126A	protein-coding
66496	chr14	61694621	61697680	+	0	NA	promoter-TSS (NR_047116)	promoter-TSS (NR_047116)	-327	NR_047116	100750246		NR_047116		HIF1A-AS1	5'aHIF-1A|5'aHIF1alpha	HIF1A antisense RNA 1	ncRNA
63758	chr14	21244701	21245000	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluSx4|SINE|Alu	24592	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
129891	chr2	73176881	73178530	+	0	NA	Intergenic	Intergenic	-24869	NM_001134462	344022		NM_001134462	ENSG00000214513	NOTO	-	notochord homeobox	protein-coding
170084	chr3	182977971	182978330	+	0	NA	intron (NM_001308101, intron 1 of 6)	intron (NM_001308101, intron 1 of 6)	2388	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
17799	chr1	159803671	159804190	+	0	NA	intron (NM_001284217, intron 2 of 10)	intron (NM_001284217, intron 2 of 10)	1570	NM_001004310	343413		NM_001004310	ENSG00000181036	FCRL6	FcRH6	Fc receptor like 6	protein-coding
93388	chr17	18267171	18267700	+	0	NA	TTS (NM_139162)	TTS (NM_139162)	6325	NM_148886	125170		NM_139162	ENSG00000177427	MIEF2	COXPD49|D3B|MID49|SMCR7	mitochondrial elongation factor 2	protein-coding
16262	chr1	153984971	153986030	+	0	NA	promoter-TSS (NM_001272038)	promoter-TSS (NM_001272038)	-134	NM_001272038	5872		NM_002870	ENSG00000143545	RAB13	GIG4	RAB13, member RAS oncogene family	protein-coding
177898	chr4	128961601	128961800	+	0	NA	intron (NM_144643, intron 11 of 20)	L1MEd|LINE|L1	131839	NM_144643	132320		NM_144643	ENSG00000151466	SCLT1	CAP-1A|CAP1A	sodium channel and clathrin linker 1	protein-coding
101312	chr17	66540621	66541080	+	0	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-123996	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
62065	chr13	94236951	94237050	+	0	NA	intron (NM_005708, intron 4 of 8)	intron (NM_005708, intron 4 of 8)	-49009	NR_046535	100873972		NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
95824	chr17	38756521	38757130	+	0	NA	intron (NR_104194, intron 3 of 4)	(T)n|Simple_repeat|Simple_repeat	4084	NR_104195	5691		NM_002795	ENSG00000277791	PSMB3	HC10-II	proteasome 20S subunit beta 3	protein-coding
214648	chr7	150755251	150756300	+	0	NA	Intergenic	Intergenic	18427	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
32618	chr10	103659651	103660750	+	0	NA	intron (NM_014631, intron 8 of 13)	intron (NM_014631, intron 8 of 13)	18015	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
161803	chr3	45387221	45387550	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-1191	NM_001368263	23395		NM_015340	ENSG00000011376	LARS2	HLASA|LEURS|PRLTS4|mtLeuRS	leucyl-tRNA synthetase 2, mitochondrial	protein-coding
210356	chr7	99567551	99568050	+	0	NA	intron (NM_138494, intron 2 of 2)	AluSg|SINE|Alu	8966	NM_001363334	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
23516	chr1	228938271	228939080	+	0	NA	Intergenic	Intergenic	203196	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
27714	chr10	33335051	33335630	+	0	NA	promoter-TSS (NM_001024628)	promoter-TSS (NM_001024628)	-435	NR_045259	8829		NM_003873	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
154076	chr22	30754571	30754730	+	0	NA	intron (NM_030758, intron 2 of 13)	intron (NM_030758, intron 2 of 13)	-9603	NM_001282740	23762		NM_030758	ENSG00000184792	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
133564	chr2	121472501	121472850	+	0	NA	intron (NM_001142274, intron 8 of 37)	L1MEc|LINE|L1	-58205	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
128364	chr2	55006371	55007030	+	0	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	3572	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
184147	chr5	95554471	95555930	+	0	NA	promoter-TSS (NM_014639)	promoter-TSS (NM_014639)	99	NM_198150	153642		NM_198150	ENSG00000164291	ARSK	MPS10|TSULF	arylsulfatase family member K	protein-coding
196122	chr6	42389951	42392000	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	61076	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
40970	chr11	65363271	65363430	+	0	NA	Intergenic	AluJr|SINE|Alu	8599	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
115249	chr19	14526771	14527300	+	0	NA	intron (NM_001313964, intron 2 of 3)	AluJr|SINE|Alu	2287	NM_001313964	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
27675	chr10	33107751	33108050	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	8907	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
205371	chr7	13988721	13989600	+	0	NA	intron (NM_001163149, intron 1 of 11)	intron (NM_001163149, intron 1 of 11)	506	NM_004956	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
48288	chr12	8948851	8950500	+	0	NA	promoter-TSS (NM_001329103)	promoter-TSS (NM_001329103)	-30	NM_002355	4074		NM_002355	ENSG00000003056	M6PR	CD-M6PR|CD-MPR|MPR 46|MPR-46|MPR46|SMPR	mannose-6-phosphate receptor, cation dependent	protein-coding
103601	chr17	78719751	78720750	+	0	NA	intron (NM_017456, intron 1 of 12)	L1MB2|LINE|L1	-3218	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
92347	chr17	8172291	8174450	+	0	NA	TTS (NR_033294)	TTS (NR_033294)	218	NR_033294	727676		NR_033294	ENSG00000200463	SNORD118	LCC|U8	small nucleolar RNA, C/D box 118	snoRNA
81127	chr16	4389571	4389730	+	0	NA	intron (NM_001351729, intron 7 of 27)	intron (NM_001351729, intron 7 of 27)	17802	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
157624	chr22	46070221	46072180	+	0	NA	promoter-TSS (NR_148973)	promoter-TSS (NR_148973)	-179	NR_148973	642648		NR_148973		LINC02939	-	long intergenic non-protein coding RNA 2939	ncRNA
99195	chr17	49508121	49508380	+	0	NA	intron (NM_002507, intron 3 of 5)	intron (NM_002507, intron 3 of 5)	-2567	NR_106751	102465141		NR_106751	ENSG00000277478	MIR6165	hsa-mir-6165	microRNA 6165	ncRNA
220036	chr8	91076551	91076900	+	0	NA	exon (NM_001286745, exon 4 of 8)	exon (NM_001286745, exon 4 of 8)	6381	NM_016023	51633		NM_016023	ENSG00000155100	OTUD6B	CGI-77|DUBA-5|DUBA5|IDDFSDA	OTU deubiquitinase 6B	protein-coding
158432	chr22	50579251	50579550	+	0	NA	promoter-TSS (NM_001145134)	promoter-TSS (NM_001145134)	-788	NM_001145135	1375		NM_004377	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B	protein-coding
5684	chr1	26356671	26357030	+	0	NA	Intergenic	MIRb|SINE|MIR	-2720	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
239220	chrY	12935001	12935400	+	0	NA	Intergenic	Intergenic	29495	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
16591	chr1	155035721	155036180	+	0	NA	intron (NM_152494, intron 4 of 16)	AluSq2|SINE|Alu	2126	NM_152494	149095		NM_152494	ENSG00000163357	DCST1	SNKY|SPE49	DC-STAMP domain containing 1	protein-coding
146936	chr20	51801351	51801650	+	0	NA	intron (NM_001318031, intron 1 of 3)	CpG	1021	NM_001318031	57167		NM_020436	ENSG00000101115	SALL4	DRRS|HSAL4|IVIC|ZNF797	spalt like transcription factor 4	protein-coding
75682	chr15	67828551	67828750	+	0	NA	intron (NM_001365915, intron 2 of 8)	CpG-8353	3141	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
165818	chr3	105825051	105825350	+	0	NA	intron (NM_001321811, intron 3 of 16)	L2a|LINE|L2	42391	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
238930	chrX	154745651	154746650	+	0	NA	intron (NR_104114, intron 1 of 8)	L1MEc|LINE|L1	4927	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
226668	chr9	75022551	75023030	+	0	NA	intron (NM_152420, intron 1 of 7)	intron (NM_152420, intron 1 of 7)	4361	NM_001320497	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
24453	chr1	243838071	243839180	+	0	NA	intron (NM_005465, intron 2 of 13)	intron (NM_005465, intron 2 of 13)	4657	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
99408	chr17	50024951	50025630	+	0	NA	Intergenic	(TGCA)n|Simple_repeat|Simple_repeat	-30066	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
103951	chr17	79893851	79894350	+	0	NA	Intergenic	(TCA)n|Simple_repeat|Simple_repeat	-25257	NR_110851	101928738		NR_110851	ENSG00000262188	LINC01978	-	long intergenic non-protein coding RNA 1978	ncRNA
8433	chr1	40629301	40630080	+	0	NA	intron (NM_014747, intron 5 of 7)	MamTip3|DNA|hAT-Tip100	35992	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
48939	chr12	12720821	12721580	+	0	NA	3' UTR (NM_004064, exon 3 of 3)	3' UTR (NM_004064, exon 3 of 3)	3832	NM_004064	1027		NM_004064	ENSG00000111276	CDKN1B	CDKN4|KIP1|MEN1B|MEN4|P27KIP1	cyclin dependent kinase inhibitor 1B	protein-coding
99160	chr17	49365571	49366150	+	0	NA	non-coding (NR_110884, exon 3 of 3)	non-coding (NR_110884, exon 3 of 3)	-3387	NM_014897	22834		NM_014897	ENSG00000198740	ZNF652	-	zinc finger protein 652	protein-coding
37953	chr11	34468301	34468680	+	0	NA	intron (NM_001752, intron 11 of 12)	intron (NM_001752, intron 11 of 12)	29556	NM_001752	847		NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
97226	chr17	42800001	42800280	+	0	NA	intron (NM_173478, intron 1 of 6)	intron (NM_173478, intron 1 of 6)	1279	NM_001330222	124817		NM_173478	ENSG00000176563	CNTD1	CNTD|COSA1	cyclin N-terminal domain containing 1	protein-coding
222211	chr8	133061601	133061800	+	0	NA	intron (NM_001045557, intron 1 of 7)	intron (NM_001045557, intron 1 of 7)	-1346	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
70012	chr14	100078301	100080150	+	0	NA	intron (NM_016337, intron 1 of 13)	intron (NM_016337, intron 1 of 13)	13803	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
208212	chr7	65222321	65222780	+	0	NA	intron (NR_146906, intron 15 of 17)	AluSc|SINE|Alu	81520	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
54191	chr12	79841401	79842050	+	0	NA	intron (NM_001143885, intron 4 of 25)	intron (NM_001143885, intron 4 of 25)	72186	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
214960	chr7	151852501	151852800	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-24392	NR_038926	100505483		NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	ncRNA
52588	chr12	56186621	56186880	+	0	NA	intron (NM_003075, intron 2 of 27)	MIRb|SINE|MIR	2733	NM_001130420	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
96423	chr17	40176471	40179330	+	0	NA	exon (NM_016339, exon 1 of 15)	exon (NM_016339, exon 1 of 15)	430	NM_016339	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
73107	chr15	41114251	41114650	+	0	NA	intron (NR_104038, intron 1 of 34)	AluSx1|SINE|Alu	1796	NR_104038	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
96375	chr17	40104771	40105300	+	0	NA	Intergenic	Intergenic	-4446	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
115027	chr19	14089301	14090000	+	0	NA	intron (NM_138352, intron 2 of 5)	MIR|SINE|MIR	1101	NM_138352	90378		NM_138352	ENSG00000141858	SAMD1	-	sterile alpha motif domain containing 1	protein-coding
208983	chr7	74211071	74211750	+	0	NA	intron (NM_014146, intron 1 of 12)	AluSx|SINE|Alu	1404	NM_014146	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
121067	chr19	45868471	45868800	+	0	NA	intron (NM_004497, intron 1 of 1)	intron (NM_004497, intron 1 of 1)	4309	NM_004497	3171		NM_004497	ENSG00000170608	FOXA3	FKHH3|HNF3G|TCF3G	forkhead box A3	protein-coding
131984	chr2	100292101	100292330	+	0	NA	intron (NM_001371783, intron 10 of 12)	intron (NM_001371783, intron 10 of 12)	30286	NM_001371783	164832		NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
20580	chr1	198744221	198744800	+	0	NA	intron (NM_002838, intron 26 of 32)	intron (NM_002838, intron 26 of 32)	105470	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
205908	chr7	25259401	25260030	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-31229	NM_022150	64111		NM_022150	ENSG00000105954	NPVF	C7orf9|RFRP	neuropeptide VF precursor	protein-coding
77129	chr15	79336971	79337130	+	0	NA	intron (NM_001330376, intron 2 of 2)	intron (NM_001330376, intron 2 of 2)	25938	NM_007364	23423		NM_007364	ENSG00000166557	TMED3	C15orf22|P24B|p24g4|p24gamma4|p26	transmembrane p24 trafficking protein 3	protein-coding
226696	chr9	75104701	75105300	+	0	NA	intron (NM_012383, intron 1 of 9)	MIR|SINE|MIR	16486	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
54898	chr12	95959171	95959330	+	0	NA	intron (NM_152435, intron 4 of 8)	MIRb|SINE|MIR	15919	NM_152435	144193		NM_152435	ENSG00000139344	AMDHD1	HMFT1272	amidohydrolase domain containing 1	protein-coding
219541	chr8	76997251	76997600	+	0	NA	intron (NM_001172086, intron 2 of 4)	AluSx|SINE|Alu	2653	NM_000318	5828		NM_000318	ENSG00000164751	PEX2	PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3	peroxisomal biogenesis factor 2	protein-coding
109040	chr18	79743971	79744330	+	0	NA	intron (NM_004715, intron 12 of 12)	MER4A1|LTR|ERV1	62720	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
231528	chr9	131428951	131429050	+	0	NA	intron (NM_013318, intron 1 of 31)	AluSx1|SINE|Alu	34914	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
126190	chr2	26766721	26767430	+	0	NA	intron (NM_017877, intron 1 of 5)	MIR3|SINE|MIR	2791	NM_017877	54978		NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
201282	chr6	144288701	144288900	+	0	NA	Intergenic	AluSz|SINE|Alu	-2937	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
160687	chr3	32296351	32297300	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	58145	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
196297	chr6	43013251	43014780	+	0	NA	promoter-TSS (NM_001318942)	promoter-TSS (NM_001318942)	-32	NM_001318942	4201		NM_014623	ENSG00000124733	MEA1	HYS|MEA	male-enhanced antigen 1	protein-coding
138914	chr2	218128951	218129450	+	0	NA	intron (NM_001168298, intron 2 of 3)	intron (NM_001168298, intron 2 of 3)	3172	NM_001557	3579		NM_001557	ENSG00000180871	CXCR2	CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB|WHIMS2	C-X-C motif chemokine receptor 2	protein-coding
52312	chr12	54900851	54901150	+	0	NA	Intergenic	L1PA4|LINE|L1	46484	NM_058173	118430		NM_058173	ENSG00000172551	MUCL1	SBEM	mucin like 1	protein-coding
134054	chr2	131363651	131364030	+	0	NA	5' UTR (NM_001077637, exon 1 of 1)	5' UTR (NM_001077637, exon 1 of 1)	328	NM_001077637	150786		NM_001077637	ENSG00000233087	RAB6D	RAB6CL|WTH3DI	RAB6D, member RAS oncogene family	protein-coding
201913	chr6	151381901	151382330	+	0	NA	intron (NM_020861, intron 1 of 2)	Tigger3a|DNA|TcMar-Tigger	9444	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
13240	chr1	112696251	112697130	+	0	NA	exon (NM_001321324, exon 14 of 21)	exon (NM_001321324, exon 14 of 21)	10366	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
205658	chr7	22852771	22852930	+	0	NA	Intergenic	MER39B|LTR|ERV1	-1390	NR_146320	109729180		NR_146320	ENSG00000228649	SNHG26	-	small nucleolar RNA host gene 26	ncRNA
182170	chr5	56681301	56681580	+	0	NA	Intergenic	Intergenic	-75184	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
207832	chr7	50332901	50333830	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	14317	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
74912	chr15	63629401	63629600	+	0	NA	intron (NM_003922, intron 69 of 77)	intron (NM_003922, intron 69 of 77)	-28673	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
233737	chrX	1378051	1378830	+	0	NA	intron (NM_001267713, intron 7 of 9).2	intron (NM_001267713, intron 7 of 9).2	13673	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
225095	chr9	33414371	33414530	+	0	NA	Intergenic	Intergenic	-11768	NM_001318156	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
27222	chr10	28791921	28792000	+	0	NA	non-coding (NR_038374, exon 3 of 3)	non-coding (NR_038374, exon 3 of 3)	4090	NR_038374	100507605		NR_038374	ENSG00000235824	LINC00837	-	long intergenic non-protein coding RNA 837	ncRNA
103739	chr17	78888851	78889150	+	0	NA	intron (NM_003255, intron 1 of 4)	MER58A|DNA|hAT-Charlie	14201	NM_001243540	100653515		NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
170317	chr3	184355551	184356200	+	0	NA	intron (NM_004366, intron 10 of 23)	intron (NM_004366, intron 10 of 23)	5730	NM_001171089	1181		NM_004366	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|FHA2|FHII|HALD2|LKPAT|clC-2	chloride voltage-gated channel 2	protein-coding
224493	chr9	16923301	16923500	+	0	NA	Intergenic	Intergenic	-52730	NM_017637	54796		NM_017637	ENSG00000173068	BNC2	BSN2|LUTO|bn2	basonuclin zinc finger protein 2	protein-coding
160719	chr3	32427971	32429430	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	36847	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
234257	chrX	13123821	13124280	+	0	NA	Intergenic	Intergenic	-79430	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
65631	chr14	52302951	52303450	+	0	NA	Intergenic	AluJb|SINE|Alu	-11112	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
197003	chr6	53310701	53311530	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	26502	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
104259	chr17	80760301	80760750	+	0	NA	intron (NM_020761, intron 6 of 33)	AluSx1|SINE|Alu	45107	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
61639	chr13	73861171	73861930	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	272379	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
78005	chr15	89690271	89691650	+	0	NA	promoter-TSS (NM_003847)	promoter-TSS (NM_003847)	149	NM_020212	56964		NM_020212	ENSG00000140527	WDR93	C1d-87|CFAP297|FAP297	WD repeat domain 93	protein-coding
202446	chr6	158028071	158028580	+	0	NA	intron (NM_003898, intron 2 of 26)	intron (NM_003898, intron 2 of 26)	11232	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
150041	chr21	37371651	37371750	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	4143	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
226940	chr9	79621771	79622130	+	0	NA	intron (NM_001351563, intron 5 of 17)	L2|LINE|L2	48773	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
85091	chr16	33129251	33129500	+	0	NA	Intergenic	L1MC5a|LINE|L1	-64887	NM_016212	24150		NM_015369	ENSG00000183632	TP53TG3	P53TG3|TP53TG3A|TP53TG3E|TP53TG3F	TP53 target 3	protein-coding
53547	chr12	67452301	67452750	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-9966	NR_146500	102724433		NR_146500	ENSG00000256172	LINC02420	-	long intergenic non-protein coding RNA 2420	ncRNA
81099	chr16	4361621	4362980	+	0	NA	intron (NM_001351729, intron 15 of 27)	intron (NM_001351729, intron 15 of 27)	-9548	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
140040	chr2	231200471	231201750	+	0	NA	intron (NM_001352755, intron 1 of 20)	intron (NM_001352755, intron 1 of 20)	2479	NM_001352755	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
127706	chr2	43230601	43231430	+	0	NA	non-coding (NR_073394, exon 36 of 36)	non-coding (NR_073394, exon 36 of 36)	3804	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
212782	chr7	130063021	130063730	+	0	NA	Intergenic	Intergenic	-7159	NM_014997	23008		NM_014997	ENSG00000128607	KLHDC10	PNAS-138|slim	kelch domain containing 10	protein-coding
164442	chr3	59425901	59426450	+	0	NA	Intergenic	Intergenic	232322	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
36570	chr11	6654071	6654430	+	0	NA	intron (NM_003737, intron 1 of 20)	intron (NM_003737, intron 1 of 20)	1559	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
187523	chr5	142456011	142456150	+	0	NA	intron (NR_120664, intron 3 of 3)	MLT2C2|LTR|ERVL	130787	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
190610	chr5	181176401	181176930	+	0	NA	Intergenic	MER41B|LTR|ERV1	15243	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
215224	chr7	156625701	156625900	+	0	NA	intron (NR_026865, intron 1 of 3)	L1MCa|LINE|L1	14735	NR_026865	100506380		NM_032625	ENSG00000182648	RNF32-DT	C7orf13|LINC01006|MY040	RNF32 divergent transcript	ncRNA
142873	chr20	17680921	17681700	+	0	NA	intron (NM_001042576, intron 1 of 25)	CpG	932	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
193854	chr6	31546121	31547100	+	0	NA	promoter-TSS (NM_130463)	promoter-TSS (NM_130463)	-2	NM_130463	534		NM_130463	ENSG00000213760	ATP6V1G2	ATP6G|ATP6G2|NG38|VMA10	ATPase H+ transporting V1 subunit G2	protein-coding
174819	chr4	48137401	48138270	+	0	NA	intron (NM_003215, intron 17 of 17)	intron (NM_003215, intron 17 of 17)	-3585	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
111502	chr19	3978411	3980700	+	0	NA	intron (NM_001961, intron 10 of 14)	intron (NM_001961, intron 10 of 14)	3017	NR_002602	26812		NR_002602	ENSG00000206775	SNORD37	RNU37|U37	small nucleolar RNA, C/D box 37	snoRNA
232553	chr9	136351621	136352730	+	0	NA	promoter-TSS (NM_001145639)	promoter-TSS (NM_001145639)	-882	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
221264	chr8	122789701	122790430	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	8410	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
135846	chr2	170814951	170815050	+	0	NA	Intergenic	Intergenic	-1690	NM_013445	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
133105	chr2	112635701	112636200	+	0	NA	Intergenic	Intergenic	8230	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
177866	chr4	128513951	128514300	+	0	NA	intron (NR_125882, intron 7 of 8)	L1MEi|LINE|L1	86109	NR_125882	100507487		NR_125882	ENSG00000251432	LINC02615	-	long intergenic non-protein coding RNA 2615	ncRNA
6462	chr1	28263221	28263850	+	0	NA	intron (NM_031459, intron 1 of 9)	intron (NM_031459, intron 1 of 9)	4017	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
140454	chr2	233162771	233163180	+	0	NA	intron (NM_001017915, intron 11 of 26).2	intron (NM_001017915, intron 11 of 26).2	-88596	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
111935	chr19	4757651	4757950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11305	NR_027148	284424		NM_174947	ENSG00000176840	MIR7-3HG	C19orf30|Huh7|LINC00306|NCRNA00306|PGSF1|uc002mbe.2	MIR7-3 host gene	ncRNA
50864	chr12	49178071	49178230	+	0	NA	Intergenic	Intergenic	10930	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
48106	chr12	7677401	7677700	+	0	NA	Intergenic	Intergenic	-6951	NM_001304566	339		NM_001644	ENSG00000111701	APOBEC1	APO1|APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme catalytic subunit 1	protein-coding
170536	chr3	186691371	186691730	+	0	NA	Intergenic	Intergenic	25536	NM_000412	3273		NM_000412	ENSG00000113905	HRG	HPRG|HRGP|THPH11	histidine rich glycoprotein	protein-coding
45123	chr11	117180051	117180350	+	0	NA	intron (NM_001040455, intron 1 of 25)	intron (NM_001040455, intron 1 of 25)	1457	NM_001040455	51092		NM_015996	ENSG00000149577	SIDT2	CGI-40	SID1 transmembrane family member 2	protein-coding
228716	chr9	109106971	109107930	+	0	NA	intron (NM_032012, intron 2 of 17)	intron (NM_032012, intron 2 of 17)	12497	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
171633	chr3	197554121	197555500	+	0	NA	intron (NM_203314, intron 1 of 7).2	CpG	1158	NM_203314	622		NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding
154192	chr22	31345011	31347000	+	0	NA	promoter-TSS (NR_120386)	promoter-TSS (NR_120386)	341	NM_032052	23598		NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ/BTB and AT hook containing zinc finger 1	protein-coding
114112	chr19	11134001	11134580	+	0	NA	TTS (NM_001195798)	TTS (NM_001195798)	20816	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
170811	chr3	189323801	189324000	+	0	NA	3' UTR (NM_198485, exon 6 of 6)	3' UTR (NM_198485, exon 6 of 6)	-83306	NR_046722	100874027		NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
237753	chrX	129676921	129677300	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-22154	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
221786	chr8	127958951	127959050	+	0	NA	intron (NR_003367, intron 3 of 8)	MIR|SINE|MIR	-1633	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
49227	chr12	19129421	19131080	+	0	NA	intron (NM_001256470, intron 2 of 31)	CpG-5357	517	NM_001143821	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
179622	chr4	186070401	186070600	+	0	NA	intron (NM_003265, intron 1 of 4)	AluJb|SINE|Alu	1344	NM_003265	7098		NM_003265	ENSG00000164342	TLR3	CD283|IIAE2|IMD83	toll like receptor 3	protein-coding
6735	chr1	30687801	30688000	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-30872	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
115276	chr19	14556251	14557480	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	15201	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
68916	chr14	91362421	91363100	+	0	NA	intron (NM_001080414, intron 3 of 29)	AluY|SINE|Alu	55060	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
130778	chr2	86842471	86843550	+	0	NA	intron (NM_004931, intron 5 of 5)	L4_A_Mam|LINE|RTE-X	-18815	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
217582	chr8	29520721	29520980	+	0	NA	Intergenic	Intergenic	-170166	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
154049	chr22	30593371	30594230	+	0	NA	intron (NM_001282327, intron 2 of 16)	MIR|SINE|MIR	-1890	NM_014303	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
124385	chr19	58389451	58390650	+	0	NA	intron (NM_001009, intron 2 of 5)	AluSq2|SINE|Alu	2781	NM_001009	6193		NM_001009	ENSG00000083845	RPS5	S5|uS7	ribosomal protein S5	protein-coding
236143	chrX	63519421	63519730	+	0	NA	intron (NR_152610, intron 1 of 4)	L1PA4|LINE|L1	41520	NR_152610	92249		NR_015353	ENSG00000235437	LINC01278	-	long intergenic non-protein coding RNA 1278	ncRNA
10523	chr1	66938171	66938830	+	0	NA	intron (NM_001077704, intron 1 of 13)	intron (NM_001077704, intron 1 of 13)	8244	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
182723	chr5	68256971	68257600	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-31234	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
200562	chr6	136277671	136277900	+	0	NA	intron (NM_001301038, intron 4 of 12)	intron (NM_001301038, intron 4 of 12)	12061	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
100251	chr17	59373151	59373450	+	0	NA	intron (NM_001005404, intron 2 of 4)	intron (NM_001005404, intron 2 of 4)	7217	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
185914	chr5	132822971	132824950	+	0	NA	exon (NM_001172700, exon 7 of 10)	exon (NM_001172700, exon 7 of 10)	2350	NM_133456	134549		NM_133456	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
9778	chr1	53502851	53503150	+	0	NA	Intergenic	Intergenic	43601	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
79489	chr16	774121	774380	+	0	NA	Intergenic	Intergenic	4067	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
122506	chr19	49586951	49587550	+	0	NA	intron (NM_000951, intron 4 of 6)	AluJo|SINE|Alu	-3932	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
164711	chr3	67947721	67948500	+	0	NA	TTS (NR_109992)	TTS (NR_109992)	-43482	NM_001252216	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
159250	chr3	12929821	12930350	+	0	NA	intron (NM_014869, intron 3 of 13)	intron (NM_014869, intron 3 of 13)	37645	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
218159	chr8	41929401	41929780	+	0	NA	3' UTR (NM_006766, exon 17 of 17)	3' UTR (NM_006766, exon 17 of 17)	-32849	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
109454	chr19	769701	770630	+	0	NA	Intergenic	AluY|SINE|Alu	19053	NR_135168	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
136993	chr2	190536501	190536930	+	0	NA	Intergenic	L1MCc|LINE|L1	-1993	NR_136298	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
91967	chr17	7396001	7396500	+	0	NA	intron (NR_037719, intron 2 of 9)	L2a|LINE|L2	-1725	NM_001369407	57048		NM_020360	ENSG00000187838	PLSCR3	-	phospholipid scramblase 3	protein-coding
74657	chr15	60932471	60933130	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	251231	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
171734	chr3	197956721	197957300	+	0	NA	TTS (NM_001316311)	TTS (NM_001316311)	2981	NM_032263	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
169947	chr3	179073371	179073530	+	0	NA	promoter-TSS (NM_001375828)	promoter-TSS (NM_001375828)	-937	NM_001375827	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
66285	chr14	61383271	61383980	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	62182	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
30693	chr10	80526701	80527200	+	0	NA	Intergenic	MIRc|SINE|MIR	8992	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
191219	chr6	5672271	5672430	+	0	NA	intron (NR_110842, intron 2 of 3)	intron (NR_110842, intron 2 of 3)	22922	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
12082	chr1	99749851	99750200	+	0	NA	intron (NM_001361041, intron 1 of 16)	intron (NM_001361041, intron 1 of 16)	15768	NM_001013660	391059		NM_001013660	ENSG00000156869	FRRS1	SDFR2|SDR2	ferric chelate reductase 1	protein-coding
134440	chr2	143148871	143149330	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	19681	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
120928	chr19	45664771	45665130	+	0	NA	Intergenic	Intergenic	-3271	NM_001308418	2696		NM_000164	ENSG00000010310	GIPR	PGQTL2	gastric inhibitory polypeptide receptor	protein-coding
62320	chr13	99051001	99051250	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-35340	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
237904	chrX	131778571	131778730	+	0	NA	intron (NR_152876, intron 4 of 9)	intron (NR_152876, intron 4 of 9)	51993	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
168333	chr3	141795321	141795580	+	0	NA	intron (NM_139209, intron 4 of 5)	L2b|LINE|L2	32042	NM_139209	131890		NM_139209	ENSG00000114124	GRK7	GPRK7	G protein-coupled receptor kinase 7	protein-coding
45788	chr11	119313301	119313850	+	0	NA	promoter-TSS (NR_106814)	promoter-TSS (NR_106814)	-563	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
200475	chr6	135181001	135181930	+	0	NA	non-coding (NR_134960, exon 1 of 16)	non-coding (NR_134960, exon 1 of 16)	157	NM_001161657	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
44463	chr11	104965901	104966300	+	0	NA	intron (NM_033306, intron 1 of 9)	LTR8|LTR|ERV1	2474	NM_001225	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
181758	chr5	50720871	50721030	+	0	NA	intron (NM_024615, intron 2 of 25)	MER91A|DNA|hAT-Tip100	53536	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
220584	chr8	100847111	100848050	+	0	NA	Intergenic	Intergenic	102991	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
58847	chr12	132903801	132904000	+	0	NA	Intergenic	AluY|SINE|Alu	16058	NR_110919	101928530		NR_110919	ENSG00000236617	CHFR-DT	-	CHFR divergent transcript	ncRNA
77327	chr15	82505771	82505930	+	0	NA	intron (NR_026811, intron 1 of 7)	intron (NR_026811, intron 1 of 7)	8145	NR_102747	727751		NR_102747		LOC727751	-	golgin A2 pseudogene	pseudo
182624	chr5	66814421	66814700	+	0	NA	intron (NM_198828, intron 3 of 5)	intron (NM_198828, intron 3 of 5)	-14213	NM_015183	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
89920	chr16	89717071	89717230	+	0	NA	intron (NR_036480, intron 3 of 3)	intron (NR_036480, intron 3 of 3)	-3218	NR_110128	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
107202	chr18	36066101	36066300	+	0	NA	intron (NM_001303411, intron 1 of 7)	intron (NM_001303411, intron 1 of 7)	1359	NM_001303411	55197		NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
188846	chr5	159198201	159199030	+	0	NA	intron (NM_001199383, intron 2 of 10)	L2b|LINE|L2	9033	NM_001199382	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
73309	chr15	41891901	41892100	+	0	NA	promoter-TSS (NR_135681)	promoter-TSS (NR_135681)	-777	NR_135681	105370792		NR_135681	ENSG00000174171	LOC105370792	-	uncharacterized LOC105370792	ncRNA
198289	chr6	100001921	100002180	+	0	NA	intron (NR_038384, intron 2 of 2)	intron (NR_038384, intron 2 of 2)	-7812	NM_032503	84539		NM_032503	ENSG00000152034	MCHR2	GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT	melanin concentrating hormone receptor 2	protein-coding
149251	chr21	25749951	25750330	+	0	NA	intron (NM_002040, intron 4 of 9)	MER1A|DNA|hAT-Charlie	-14486	NM_001320267	522		NM_001685	ENSG00000154723	ATP5PF	ATP5|ATP5A|ATP5J|ATPM|CF6|F6	ATP synthase peripheral stalk subunit F6	protein-coding
237654	chrX	124264821	124265080	+	0	NA	Intergenic	AluJb|SINE|Alu	-67710	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
168039	chr3	136913301	136913500	+	0	NA	intron (NM_001291999, intron 1 of 3)	AluJo|SINE|Alu	-17102	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
41616	chr11	66419751	66420130	+	0	NA	Intergenic	Intergenic	-1064	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
135879	chr2	171083871	171084630	+	0	NA	intron (NM_012290, intron 2 of 20)	HAL1M8|LINE|L1	-17277	NM_001136555	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
205877	chr7	25094221	25094580	+	0	NA	Intergenic	Intergenic	30860	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
228133	chr9	96707251	96707550	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-18421	NR_026792	441455		NR_026792		LOC441455	-	makorin ring finger protein 1 pseudogene	pseudo
98812	chr17	48333021	48333280	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	38803	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
157170	chr22	42962671	42962830	+	0	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	-2414	NM_001349970	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
151558	chr21	46556071	46556430	+	0	NA	intron (NM_001353942, intron 29 of 37)	intron (NM_001353942, intron 29 of 37)	48832	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
83184	chr16	23486321	23486580	+	0	NA	intron (NM_015044, intron 7 of 16)	intron (NM_015044, intron 7 of 16)	24044	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
57441	chr12	121899351	121900180	+	0	NA	exon (NM_002813, exon 3 of 6)	exon (NM_002813, exon 3 of 6)	10975	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
199465	chr6	117685021	117685280	+	0	NA	intron (NM_138459, intron 1 of 4)	intron (NM_138459, intron 1 of 4)	9681	NM_138459	116150		NM_138459	ENSG00000153989	NUS1	C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding
76530	chr15	75109721	75110050	+	0	NA	Intergenic	Intergenic	66599	NM_001301105	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
141627	chr2	241689121	241690180	+	0	NA	intron (NM_001330161, intron 1 of 7)	MLT1I|LTR|ERVL-MaLR	2630	NM_001330161	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
175595	chr4	75682901	75683580	+	0	NA	Intergenic	Intergenic	-9757	NM_203504	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
202479	chr6	158242321	158242930	+	0	NA	Intergenic	Intergenic	-69840	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
132477	chr2	105906301	105906900	+	0	NA	Intergenic	Intergenic	54753	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
186253	chr5	134503071	134504580	+	0	NA	Intergenic	Intergenic	-2727	NR_105045	101927934		NR_105045	ENSG00000251169	LINC01843	Lnc-APUE	long intergenic non-protein coding RNA 1843	ncRNA
11374	chr1	89649551	89650150	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	16730	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
224215	chr9	5589871	5590500	+	0	NA	Intergenic	Intergenic	-38922	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
92149	chr17	7654251	7654950	+	0	NA	intron (NM_001303263, intron 3 of 5)	intron (NM_001303263, intron 3 of 5)	3674	NM_001678	482		NM_001678	ENSG00000129244	ATP1B2	AMOG	ATPase Na+/K+ transporting subunit beta 2	protein-coding
85321	chr16	49890951	49891050	+	0	NA	Intergenic	MIRc|SINE|MIR	-33081	NM_001271620	23090		NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
81329	chr16	4738351	4738650	+	0	NA	intron (NM_139170, intron 3 of 9)	SVA_A|Retroposon|SVA	3963	NM_139170	146562		NM_139170	ENSG00000166246	DNAAF8	C16orf71|Daap1	dynein axonemal assembly factor 8	protein-coding
72246	chr15	30501701	30501900	+	0	NA	Intergenic	LTR2B|LTR|ERV1	21773	NM_001365376								
194352	chr6	32942871	32943030	+	0	NA	Intergenic	AluSz|SINE|Alu	-1922	NM_002118	3109		NM_002118	ENSG00000242574	HLA-DMB	D6S221E|RING7	major histocompatibility complex, class II, DM beta	protein-coding
147171	chr20	56456471	56456630	+	0	NA	intron (NM_001164114, intron 5 of 5)	AluSx1|SINE|Alu	-12035	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
97703	chr17	44324001	44326060	+	0	NA	promoter-TSS (NR_159401)	promoter-TSS (NR_159401)	-160	NM_001321240	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
219325	chr8	70162351	70162450	+	0	NA	intron (NM_001321713, intron 8 of 21)	intron (NM_001321713, intron 8 of 21)	-91148	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
80757	chr16	3159801	3160300	+	0	NA	Intergenic	Intergenic	15759	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
199572	chr6	118900921	118901280	+	0	NA	intron (NM_014034, intron 2 of 3)	intron (NM_014034, intron 2 of 3)	6948	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
236392	chrX	71109001	71109850	+	0	NA	intron (NM_000206, intron 4 of 7)	intron (NM_000206, intron 4 of 7)	2152	NM_000206	3561		NM_000206	ENSG00000147168	IL2RG	CD132|CIDX|IL-2RG|IMD4|P64|SCIDX|SCIDX1	interleukin 2 receptor subunit gamma	protein-coding
11	chr1	22221	22980	+	0	NA	intron (NR_024540, intron 2 of 10)	intron (NR_024540, intron 2 of 10)	-5164	NR_107063	102465910		NR_107063	ENSG00000275449	MIR6859-3	hsa-mir-6859-3	microRNA 6859-3	ncRNA
148729	chr21	7098601	7099800	+	0	NA	Intergenic	Intergenic	34774	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
122887	chr19	50514221	50515950	+	0	NA	promoter-TSS (NM_001024656)	promoter-TSS (NM_001024656)	-401	NM_001024656	554235		NM_001024656	ENSG00000204653	ASPDH	-	aspartate dehydrogenase domain containing	protein-coding
167515	chr3	129268601	129269000	+	0	NA	intron (NM_016128, intron 17 of 23)	intron (NM_016128, intron 17 of 23)	-3346	NR_106884	102465496		NR_106884	ENSG00000278658	MIR6826	hsa-mir-6826	microRNA 6826	ncRNA
28816	chr10	62244871	62245350	+	0	NA	intron (NM_001282941, intron 3 of 4)	intron (NM_001282941, intron 3 of 4)	23734	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
42414	chr11	69065701	69065900	+	0	NA	intron (NM_139075, intron 7 of 24)	intron (NM_139075, intron 7 of 24)	16868	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
51202	chr12	50517121	50517980	+	0	NA	intron (NM_173602, intron 1 of 37)	L2c|LINE|L2	12565	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
152523	chr22	20965901	20967150	+	0	NA	promoter-TSS (NR_027464)	promoter-TSS (NR_027464)	-730	NR_027464	150209		NM_144704	ENSG00000183773	AIFM3	AIFL	apoptosis inducing factor mitochondria associated 3	protein-coding
90491	chr17	1428971	1429330	+	0	NA	intron (NM_005206, intron 2 of 2)	intron (NM_005206, intron 2 of 2)	27082	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
90805	chr17	2224551	2224980	+	0	NA	intron (NM_001256827, intron 3 of 11)	L1ME1|LINE|L1	-7913	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
129397	chr2	68830901	68831130	+	0	NA	Intergenic	AluSx3|SINE|Alu	40382	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
125489	chr2	12500571	12500930	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-216122	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
154343	chr22	32411621	32412730	+	0	NA	promoter-TSS (NM_014306)	promoter-TSS (NM_014306)	72	NM_014306	51493		NM_014306	ENSG00000100220	RTCB	C22orf28|DJ149A16.6|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding
25541	chr10	7407351	7407450	+	0	NA	intron (NM_001029880, intron 1 of 20)	intron (NM_001029880, intron 1 of 20)	1941	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
21549	chr1	206202961	206204080	+	0	NA	promoter-TSS (NM_001377445)	promoter-TSS (NM_001377445)	-21	NM_001377444	23380		NM_015326	ENSG00000266028	SRGAP2	ARHGAP34|FNBP2|SRGAP2A|SRGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding
117048	chr19	18939651	18939950	+	0	NA	promoter-TSS (NR_134912)	promoter-TSS (NR_134912)	-165	NR_027297	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
154227	chr22	31533221	31533610	+	0	NA	intron (NM_001007467, intron 4 of 32)	AluSx1|SINE|Alu	36879	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
212850	chr7	130842701	130842900	+	0	NA	Intergenic	AluSx1|SINE|Alu	34010	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
63278	chr13	113964451	113965050	+	0	NA	intron (NM_001365455, intron 6 of 6)	intron (NM_001365455, intron 6 of 6)	9326	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
18654	chr1	166976701	166977250	+	0	NA	intron (NM_001286378, intron 1 of 12)	MLT1N2|LTR|ERVL-MaLR	1393	NM_001286378	84944		NM_032858	ENSG00000143194	MAEL	CT128|SPATA35	maelstrom spermatogenic transposon silencer	protein-coding
81570	chr16	9133951	9134250	+	0	NA	Intergenic	AluJo|SINE|Alu	42456	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
133913	chr2	130340101	130340500	+	0	NA	intron (NR_135548, intron 4 of 5)	intron (NR_135548, intron 4 of 5)	1864	NM_032357	84317		NM_032357	ENSG00000136710	CCDC115	CDG2O|ccp1	coiled-coil domain containing 115	protein-coding
34220	chr10	129962951	129963550	+	0	NA	intron (NM_001375379, intron 2 of 15)	CpG-3521	1024	NM_001005463	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
206973	chr7	38310501	38310780	+	0	NA	Intergenic	Intergenic	-30937	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
36099	chr11	3037371	3038050	+	0	NA	intron (NR_046580, intron 1 of 1)	intron (NR_046580, intron 1 of 1)	3274	NM_001378140	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
87182	chr16	69379921	69380930	+	0	NA	intron (NM_005652, intron 3 of 9)	AluSg7|SINE|Alu	5582	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
133282	chr2	113527451	113527950	+	0	NA	TTS (NR_121185)	TTS (NR_121185)	-11814	NR_146438	729468		NR_146438		PGM5P4	-	phosphoglucomutase 5 pseudogene 4	pseudo
103528	chr17	78541051	78541150	+	0	NA	intron (NM_173628, intron 17 of 80)	(GGTG)n|Simple_repeat|Simple_repeat	36296	NM_173628	8632		NM_003727	ENSG00000187775	DNAH17	DNAHL1|DNEL2|SPGF39	dynein axonemal heavy chain 17	protein-coding
55403	chr12	104471001	104471200	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	14152	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
146705	chr20	50563451	50563950	+	0	NA	intron (NM_002827, intron 2 of 9)	intron (NM_002827, intron 2 of 9)	-22086	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
158842	chr3	9806451	9806550	+	0	NA	3' UTR (NM_001024960, exon 6 of 6)	3' UTR (NM_001024960, exon 6 of 6)	-3415	NM_001025930	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
88066	chr16	81467171	81467680	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	22255	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
74410	chr15	58981271	58981430	+	0	NA	Intergenic	Intergenic	-6313	NM_001270528	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
58426	chr12	131926071	131926630	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-2926	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
114533	chr19	12837751	12838650	+	0	NA	promoter-TSS (NM_014975)	promoter-TSS (NM_014975)	-315	NM_014975	22983		NM_014975	ENSG00000105613	MAST1	MCCCHCM|SAST	microtubule associated serine/threonine kinase 1	protein-coding
123069	chr19	51371471	51371830	+	0	NA	TTS (NM_001363693)	TTS (NM_001363693)	1004	NM_001363693	4818		NM_005601	ENSG00000105374	NKG7	GIG1|GMP-17|p15-TIA-1	natural killer cell granule protein 7	protein-coding
108639	chr18	76492201	76493300	+	0	NA	intron (NR_136504, intron 1 of 1)	CpG	1098	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
238637	chrX	153967401	153968030	+	0	NA	intron (NM_005334, intron 1 of 25)	L2c|LINE|L2	-1050	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
203984	chr7	1671301	1671830	+	0	NA	Intergenic	Intergenic	-16554	NM_001128636	392617		NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
4797	chr1	23577301	23577800	+	0	NA	Intergenic	Intergenic	-18049	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
130495	chr2	85583001	85585830	+	0	NA	promoter-TSS (NM_006634)	promoter-TSS (NM_006634)	-16	NM_006634	10791		NM_006634	ENSG00000168899	VAMP5	-	vesicle associated membrane protein 5	protein-coding
112237	chr19	5717521	5717780	+	0	NA	intron (NM_001276480, intron 1 of 17)	intron (NM_001276480, intron 1 of 17)	2496	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
79814	chr16	1414301	1415180	+	0	NA	promoter-TSS (NM_001037125)	promoter-TSS (NM_001037125)	-36	NM_001037125	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
97135	chr17	42550021	42550450	+	0	NA	Intergenic	Intergenic	-2688	NR_144397	3292		NM_000413	ENSG00000108786	HSD17B1	17-beta-HSD|20-alpha-HSD|E2DH|EDH17B2|EDHB17|HSD17|SDR28C1	hydroxysteroid 17-beta dehydrogenase 1	protein-coding
15927	chr1	151762701	151764030	+	0	NA	promoter-TSS (NM_001301371)	promoter-TSS (NM_001301371)	-115	NM_001301371	51686		NM_016178	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
54697	chr12	93424301	93424830	+	0	NA	intron (NM_003348, intron 1 of 3)	intron (NM_003348, intron 1 of 3)	17382	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
95741	chr17	38591771	38592580	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	13777	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
91749	chr17	6755621	6757030	+	0	NA	intron (NM_001353139, intron 1 of 5)	intron (NM_001353139, intron 1 of 5)	279	NM_199139	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
73601	chr15	44549551	44549650	+	0	NA	intron (NM_001284336, intron 2 of 5)	AluSg|SINE|Alu	12453	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
177659	chr4	121306971	121307150	+	0	NA	Intergenic	Intergenic	73958	NM_198179	84109		NM_198179	ENSG00000186867	QRFPR	AQ27|GPR103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
199776	chr6	125969851	125970050	+	0	NA	intron (NM_138571, intron 2 of 4)	L1PA16|LINE|L1	13180	NM_138571	135114		NM_138571	ENSG00000111911	HINT3	HINT4	histidine triad nucleotide binding protein 3	protein-coding
201105	chr6	142851801	142852150	+	0	NA	intron (NM_006734, intron 1 of 9)	X9_LINE|LINE|L1	93201	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
198853	chr6	109373171	109374830	+	0	NA	intron (NM_001142401, intron 3 of 4)	intron (NM_001142401, intron 3 of 4)	7739	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
69233	chr14	92791721	92792330	+	0	NA	Intergenic	MIRb|SINE|MIR	-2280	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
222354	chr8	133561151	133562030	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	10297	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
79037	chr16	73471	73630	+	0	NA	promoter-TSS (NM_022450)	promoter-TSS (NM_022450)	-919	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
212301	chr7	124856301	124856600	+	0	NA	intron (NR_003104, intron 9 of 19)	intron (NR_003104, intron 9 of 19)	-65640	NR_167671	154872		NM_001024603	ENSG00000275356	LINC03043	C7orf77	long intergenic non-protein coding RNA 3043	ncRNA
212034	chr7	114935571	114935930	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	13596	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
19739	chr1	181153021	181153330	+	0	NA	Intergenic	Intergenic	-21309	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
96890	chr17	42114601	42114800	+	0	NA	intron (NM_021078, intron 13 of 17)	intron (NM_021078, intron 13 of 17)	-1986	NM_024119	79132		NM_024119	ENSG00000108771	DHX58	D11LGP2|D11lgp2e|LGP2|RLR-3	DExH-box helicase 58	protein-coding
177909	chr4	129362771	129363000	+	0	NA	Intergenic	Intergenic	266733	NM_001099783	132321		NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
65137	chr14	45083451	45084880	+	0	NA	promoter-TSS (NM_017922)	promoter-TSS (NM_017922)	49	NM_017922	55015		NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
35208	chr11	813551	813930	+	0	NA	TTS (NM_001004)	TTS (NM_001004)	2059	NR_002585	619565		NR_002585	ENSG00000199785	SNORA52	ACA52	small nucleolar RNA, H/ACA box 52	snoRNA
121048	chr19	45823101	45823500	+	0	NA	intron (NM_004819, intron 20 of 26)	intron (NM_004819, intron 20 of 26)	-7992	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
19568	chr1	179141701	179141900	+	0	NA	intron (NM_007314, intron 1 of 11)	intron (NM_007314, intron 1 of 11)	1276	NM_001168239	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
27503	chr10	32282251	32282580	+	0	NA	intron (NR_168510, intron 10 of 14)	AluJb|SINE|Alu	64743	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
231739	chr9	132032121	132032580	+	0	NA	intron (NM_001253881, intron 2 of 6)	intron (NM_001253881, intron 2 of 6)	47517	NM_001253882	9442		NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|NEDSCAC|TRAP37	mediator complex subunit 27	protein-coding
129073	chr2	65083001	65083730	+	0	NA	intron (NM_015147, intron 6 of 6)	intron (NM_015147, intron 6 of 6)	26949	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
223962	chr9	1871601	1871800	+	0	NA	Intergenic	Intergenic	-143647	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
101737	chr17	69413321	69413580	+	0	NA	Intergenic	Intergenic	-1247	NM_002758	5608		NM_002758	ENSG00000108984	MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
184196	chr5	95860801	95861000	+	0	NA	TTS (NR_026936)	TTS (NR_026936)	8668	NR_026936	202299		NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
96865	chr17	42049401	42049600	+	0	NA	intron (NM_001358661, intron 1 of 2)	intron (NM_001358661, intron 1 of 2)	1101	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
179457	chr4	184448001	184448280	+	0	NA	intron (NM_002199, intron 1 of 8)	L1MC4|LINE|L1	26410	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
95978	chr17	39164601	39166350	+	0	NA	intron (NM_001143968, intron 1 of 5)	CpG	686	NM_001143968	390790		NM_001143968	ENSG00000141748	ARL5C	ARL12	ADP ribosylation factor like GTPase 5C	protein-coding
200798	chr6	137894551	137895050	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-26567	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
21287	chr1	204448751	204448850	+	0	NA	intron (NM_001377335, intron 16 of 35)	intron (NM_001377335, intron 16 of 35)	-36983	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
212978	chr7	130976921	130977180	+	0	NA	intron (NR_109851, intron 4 of 5)	AluSz6|SINE|Alu	63586	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
207442	chr7	44566551	44566880	+	0	NA	intron (NM_019082, intron 12 of 13)	intron (NM_019082, intron 12 of 13)	7823	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
106372	chr18	13280171	13280330	+	0	NA	intron (NM_001378099, intron 2 of 6)	MIRb|SINE|MIR	2888	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
170732	chr3	188170301	188170900	+	0	NA	intron (NM_001375462, intron 1 of 11)	AluSx3|SINE|Alu	-7943	NR_024413	401105		NM_207488	ENSG00000279891	FLJ42393	AVPC1948	uncharacterized LOC401105	ncRNA
228512	chr9	100352101	100353200	+	0	NA	promoter-TSS (NM_001161584)	promoter-TSS (NM_001161584)	-79	NM_001161584	54881		NM_017746	ENSG00000136891	TEX10	Ipi1|bA208F1.2	testis expressed 10	protein-coding
233312	chr9	137412671	137413430	+	0	NA	intron (NM_017820, intron 1 of 21)	AluJb|SINE|Alu	10112	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
202511	chr6	158558651	158559030	+	0	NA	intron (NM_001376856, intron 1 of 13)	intron (NM_001376856, intron 1 of 13)	-1251	NM_001376854	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
112010	chr19	5018101	5018500	+	0	NA	intron (NM_001370093, intron 2 of 11)	AluJr|SINE|Alu	49187	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
40472	chr11	64233151	64233250	+	0	NA	intron (NM_001307980, intron 4 of 4)	intron (NM_001307980, intron 4 of 4)	-1384	NM_001243733	7423		NM_003377	ENSG00000173511	VEGFB	VEGFL|VRF	vascular endothelial growth factor B	protein-coding
152090	chr22	19766971	19767780	+	0	NA	TTS (NM_001379200)	TTS (NM_001379200)	6597	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
127935	chr2	46499721	46500950	+	0	NA	Intergenic	Intergenic	20770	NM_001145051	388946		NM_001145051	ENSG00000284701	TMEM247	-	transmembrane protein 247	protein-coding
188391	chr5	152527501	152527900	+	0	NA	Intergenic	Intergenic	-122421	NM_020167	56923		NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
186889	chr5	139563301	139564380	+	0	NA	intron (NM_181838, intron 2 of 7)	AluY|SINE|Alu	2501	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
162154	chr3	46970151	46970450	+	0	NA	intron (NM_144716, intron 2 of 7)	MER30|DNA|hAT-Charlie	6201	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
5548	chr1	25863471	25864050	+	0	NA	exon (NM_178422, exon 3 of 3)	exon (NM_178422, exon 3 of 3)	-4302	NM_001287490	79000		NM_024037	ENSG00000127423	AUNIP	AIBP|C1orf135	aurora kinase A and ninein interacting protein	protein-coding
98958	chr17	48651051	48651550	+	0	NA	Intergenic	AluYm1|SINE|Alu	-18741	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
226647	chr9	74500571	74500730	+	0	NA	intron (NM_006914, intron 1 of 9)	intron (NM_006914, intron 1 of 9)	-2097	NR_125791	103752585		NR_125791		RORB-AS1	-	RORB antisense RNA 1	ncRNA
231865	chr9	132944121	132945630	+	0	NA	promoter-TSS (NM_001162427)	promoter-TSS (NM_001162427)	-259	NM_001162427	7248		NM_000368	ENSG00000165699	TSC1	LAM|TSC	TSC complex subunit 1	protein-coding
196246	chr6	42892321	42892580	+	0	NA	Intergenic	L1MC4|LINE|L1	-1629	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
202836	chr6	159734421	159734880	+	0	NA	intron (NM_001322817, intron 2 of 7)	FLAM_C|SINE|Alu	7144	NM_001270533	9589		NM_004906	ENSG00000146457	WTAP	Mum2	WT1 associated protein	protein-coding
32034	chr10	101028001	101028400	+	0	NA	intron (NM_024895, intron 2 of 9)	intron (NM_024895, intron 2 of 9)	2929	NM_001195263	79955		NM_024895	ENSG00000186862	PDZD7	DFNB57|PDZK7	PDZ domain containing 7	protein-coding
221582	chr8	125289371	125289530	+	0	NA	intron (NR_146191, intron 6 of 8)	L2c|LINE|L2	-140908	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
56804	chr12	120210671	120211400	+	0	NA	3' UTR (NM_001243756, exon 11 of 11)	3' UTR (NM_001243756, exon 11 of 11)	9744	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
190917	chr6	2850471	2851200	+	0	NA	Intergenic	Intergenic	3272	NR_039788	100616285		NR_039788	ENSG00000266750	MIR4645	mir-4645	microRNA 4645	ncRNA
172862	chr4	3299121	3299380	+	0	NA	Intergenic	L1MEb|LINE|L1	-14897	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
164832	chr3	71016551	71017280	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	48009	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
129379	chr2	68798651	68798750	+	0	NA	intron (NM_001364819, intron 4 of 10)	L2c|LINE|L2	23790	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
142091	chr20	2522751	2523200	+	0	NA	intron (NM_001282495, intron 1 of 6)	MER41B|LTR|ERV1	1547	NM_001282495	79175		NM_024325	ENSG00000088876	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
217786	chr8	33507771	33508530	+	0	NA	intron (NM_025115, intron 2 of 6)	MER34D|LTR|ERV1	4985	NM_001265581	80185		NM_025115	ENSG00000129696	TTI2	C8orf41|MRT39	TELO2 interacting protein 2	protein-coding
184168	chr5	95762001	95762200	+	0	NA	intron (NM_014899, intron 6 of 11)	MER63A|DNA|hAT-Blackjack	-29998	NM_001349303	83890		NM_031952	ENSG00000145757	SPATA9	NYD-SP16	spermatogenesis associated 9	protein-coding
200766	chr6	137827571	137828930	+	0	NA	intron (NR_049793, intron 3 of 3)	MER5B|DNA|hAT-Charlie	-39009	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
36127	chr11	3105301	3105900	+	0	NA	intron (NM_145638, intron 8 of 20)	intron (NM_145638, intron 8 of 20)	-48177	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
18333	chr1	161194221	161194480	+	0	NA	intron (NM_005099, intron 4 of 8)	(ATTTTA)n|Simple_repeat|Simple_repeat	-3067	NM_001377298	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
135436	chr2	161171271	161171630	+	0	NA	intron (NM_001199135, intron 1 of 7)	intron (NM_001199135, intron 1 of 7)	11022	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
122702	chr19	49927201	49927650	+	0	NA	intron (NM_001193357, intron 1 of 1)	MER30|DNA|hAT-Charlie	-1277	NM_012068	22809		NM_012068	ENSG00000169136	ATF5	ATFX|HMFN0395	activating transcription factor 5	protein-coding
139642	chr2	226673371	226673530	+	0	NA	Intergenic	Intergenic	-14657	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
234200	chrX	12949621	12950600	+	0	NA	Intergenic	Intergenic	-6810	NR_030727	349408		NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
108701	chr18	77061871	77063000	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-45380	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
214667	chr7	150946421	150946880	+	0	NA	intron (NM_172057, intron 10 of 10)	intron (NM_172057, intron 10 of 10)	9154	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
45316	chr11	118171171	118172050	+	0	NA	intron (NM_004588, intron 1 of 3)	intron (NM_004588, intron 1 of 3)	5029	NM_004588	6327		NM_004588	ENSG00000149575	SCN2B	ATFB14	sodium voltage-gated channel beta subunit 2	protein-coding
141452	chr2	241041251	241042030	+	0	NA	intron (NM_001080437, intron 8 of 31)	AluSz|SINE|Alu	43022	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
135897	chr2	171210671	171211650	+	0	NA	intron (NM_001136554, intron 1 of 20)	intron (NM_001136554, intron 1 of 20)	20133	NM_001136554	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
205899	chr7	25123421	25123880	+	0	NA	3' UTR (NM_018947, exon 3 of 3)	3' UTR (NM_018947, exon 3 of 3)	1610	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
174420	chr4	39452271	39452700	+	0	NA	TTS (NM_175737)	TTS (NM_175737)	6437	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
231951	chr9	133137851	133139500	+	0	NA	intron (NM_001042368, intron 1 of 17)	AluSx|SINE|Alu	-7518	NM_001271774	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
124559	chr2	457371	457530	+	0	NA	Intergenic	Intergenic	35205	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
42889	chr11	73363451	73363550	+	0	NA	intron (NM_014786, intron 15 of 20)	intron (NM_014786, intron 15 of 20)	-12899	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
32817	chr10	109935121	109935580	+	0	NA	Intergenic	Intergenic	-11797	NM_001167604	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
234081	chrX	8987721	8988680	+	0	NA	Intergenic	L1M2|LINE|L1	45927	NM_205849	171483		NM_173696	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9 member B	protein-coding
160980	chr3	37216521	37217980	+	0	NA	Intergenic	MER52A|LTR|ERV1	-26021	NM_002078	2803		NM_002078	ENSG00000144674	GOLGA4	CRPF46|GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
202497	chr6	158357651	158357950	+	0	NA	intron (NM_001007466, intron 1 of 12)	intron (NM_001007466, intron 1 of 12)	34818	NR_145798	109623462		NR_145798		SNORA116	-	small nucleolar RNA, H/ACA box 116	snoRNA
81621	chr16	10829751	10829850	+	0	NA	Intergenic	LTR5A|LTR|ERVK	-11006	NR_134903	780776		NM_001079512	ENSG00000166676	TVP23A	FAM18A|YDR084C	trans-golgi network vesicle protein 23 homolog A	protein-coding
132499	chr2	106055121	106055580	+	0	NA	Intergenic	Intergenic	-10338	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
189864	chr5	177295571	177296130	+	0	NA	3' UTR (NM_001365684, exon 24 of 24)	3' UTR (NM_001365684, exon 24 of 24)	7869	NM_001031677	53917		NM_130781	ENSG00000169228	RAB24	-	RAB24, member RAS oncogene family	protein-coding
85629	chr16	54932271	54932730	+	0	NA	exon (NM_001252197, exon 2 of 3)	exon (NM_001252197, exon 2 of 3)	1301	NM_001252197	10265		NM_005853	ENSG00000176842	IRX5	HMMS|IRX-2a|IRXB2	iroquois homeobox 5	protein-coding
231601	chr9	131556801	131557000	+	0	NA	intron (NM_001365666, intron 3 of 3)	AluSx1|SINE|Alu	11377	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
2758	chr1	10687351	10688100	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	108921	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
15674	chr1	150932801	150933650	+	0	NA	intron (NM_012432, intron 3 of 21)	AluJo|SINE|Alu	6862	NM_012432	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
201564	chr6	149316771	149319200	+	0	NA	promoter-TSS (NM_015093)	promoter-TSS (NM_015093)	273	NM_001369506	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
62579	chr13	99982321	99983000	+	0	NA	exon (NM_007129, exon 1 of 3)	exon (NM_007129, exon 1 of 3)	876	NM_007129	7546		NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
219416	chr8	70674121	70674780	+	0	NA	intron (NM_001287259, intron 1 of 5)	intron (NM_001287259, intron 1 of 5)	5111	NM_001287258	389668		NM_001011720	ENSG00000221947	XKR9	XRG9|hXKR9	XK related 9	protein-coding
44599	chr11	108494321	108495450	+	0	NA	intron (NM_153705, intron 1 of 7)	intron (NM_153705, intron 1 of 7)	3499	NM_001363502	143888		NM_153705	ENSG00000178202	POGLUT3	KDELC2	protein O-glucosyltransferase 3	protein-coding
123363	chr19	53889551	53890630	+	0	NA	intron (NM_001316329, intron 5 of 18)	intron (NM_001316329, intron 5 of 18)	7893	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
138563	chr2	207681421	207681780	+	0	NA	Intergenic	CpG	19170	NR_135567	102724714		NR_135566	ENSG00000224137	LINC01857	-	long intergenic non-protein coding RNA 1857	ncRNA
15715	chr1	151020871	151021250	+	0	NA	intron (NM_001303243, intron 3 of 5)	AluSx|SINE|Alu	12611	NR_130135	58497		NM_021222	ENSG00000143363	PRUNE1	DRES-17|DRES17|H-PRUNE|HTCD37|NMIHBA|PRUNE	prune exopolyphosphatase 1	protein-coding
145215	chr20	38908771	38908930	+	0	NA	intron (NM_001172735, intron 9 of 9)	MLT1C|LTR|ERVL-MaLR	-17567	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
38342	chr11	44564621	44566180	+	0	NA	promoter-TSS (NM_001024844)	promoter-TSS (NM_001024844)	-263	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
82915	chr16	21727251	21727550	+	0	NA	intron (NM_144672, intron 19 of 28).2	MIR|SINE|MIR	-2171	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
169640	chr3	171348601	171348800	+	0	NA	intron (NR_027767, intron 2 of 2)	ORSL|DNA|hAT-Tip100	111705	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
84478	chr16	30478501	30479050	+	0	NA	intron (NM_001114380, intron 4 of 28)	intron (NM_001114380, intron 4 of 28)	6033	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
117067	chr19	19036621	19036880	+	0	NA	intron (NM_001199196, intron 2 of 8)	intron (NM_001199196, intron 2 of 8)	-2906	NM_001352071	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
98241	chr17	46164621	46165230	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	27857	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
230089	chr9	127525921	127526380	+	0	NA	intron (NM_022833, intron 3 of 13)	AluSc|SINE|Alu	42923	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
100087	chr17	58310401	58311030	+	0	NA	exon (NM_024418, exon 19 of 31)	exon (NM_024418, exon 19 of 31)	-14735	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
209481	chr7	76605871	76606650	+	0	NA	intron (NR_029411, intron 2 of 2)	intron (NR_029411, intron 2 of 2)	21043	NM_012230	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
134830	chr2	148603351	148603650	+	0	NA	Intergenic	L1ME2|LINE|L1	-41251	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
148538	chr20	64132071	64133580	+	0	NA	Intergenic	Intergenic	-25260	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
135391	chr2	160492221	160493400	+	0	NA	intron (NM_016836, intron 1 of 13)	CpG	997	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
71518	chr14	106134071	106134430	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-153424	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
71382	chr14	105506151	105506780	+	0	NA	Intergenic	AluSx|SINE|Alu	15216	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
143629	chr20	31788501	31788700	+	0	NA	intron (NM_012112, intron 12 of 17)	MamRTE1|LINE|RTE-BovB	-30756	NM_033118	85366		NM_033118	ENSG00000101306	MYLK2	KMLC|MLCK|MLCK2|skMLCK	myosin light chain kinase 2	protein-coding
184072	chr5	93574071	93574630	+	0	NA	intron (NR_109818, intron 1 of 6)	intron (NR_109818, intron 1 of 6)	-3007	NR_109825	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
159207	chr3	12889701	12889900	+	0	NA	Intergenic	AluSz|SINE|Alu	-4589	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
137681	chr2	197476221	197476480	+	0	NA	Intergenic	AluSz|SINE|Alu	10553	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
200330	chr6	133916521	133916880	+	0	NA	Intergenic	MIRb|SINE|MIR	27587	NM_198392	6943		NM_003206	ENSG00000118526	TCF21	POD1|bHLHa23	transcription factor 21	protein-coding
223134	chr8	143492421	143493000	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	13538	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
120551	chr19	44956551	44956650	+	0	NA	intron (NM_001294, intron 1 of 13)	L2b|LINE|L2	1220	NM_001294	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
188436	chr5	154444651	154446500	+	0	NA	promoter-TSS (NM_001131062)	promoter-TSS (NM_001131062)	247	NR_037897	386627		NR_037897	ENSG00000245275	SAP30L-AS1	GALNT10-AS1	SAP30L antisense RNA 1 (head to head)	ncRNA
110504	chr19	2053551	2053650	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2356	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
69315	chr14	93182271	93183130	+	0	NA	3' UTR (NM_022151, exon 3 of 3)	3' UTR (NM_022151, exon 3 of 3)	2197	NM_022151	64112		NM_022151	ENSG00000165943	MOAP1	MAP-1|PNMA4	modulator of apoptosis 1	protein-coding
39077	chr11	47988201	47988400	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	7741	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
102206	chr17	75181891	75183700	+	0	NA	intron (NM_006937, intron 1 of 3)	CpG	164	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
35186	chr11	789671	790380	+	0	NA	promoter-TSS (NM_016564)	promoter-TSS (NM_016564)	65	NM_016564	51286		NM_016564	ENSG00000184524	CEND1	BM88	cell cycle exit and neuronal differentiation 1	protein-coding
199749	chr6	125805101	125805300	+	0	NA	intron (NR_126386, intron 1 of 2)	AluSx|SINE|Alu	13658	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
220262	chr8	97681751	97682250	+	0	NA	intron (NM_178812, intron 2 of 11)	intron (NM_178812, intron 2 of 11)	37816	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
12553	chr1	108671151	108671450	+	0	NA	Intergenic	L1M1|LINE|L1	-9774	NM_144584	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
36329	chr11	3876901	3877500	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	21138	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
11864	chr1	93056271	93056530	+	0	NA	Intergenic	Intergenic	-22835	NM_001164393	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
188897	chr5	160013971	160014500	+	0	NA	intron (NM_001282500, intron 2 of 7)	AluSq2|SINE|Alu	5096	NM_003314	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
112169	chr19	5654601	5654800	+	0	NA	intron (NM_001320571, intron 11 of 18)	AluSx|SINE|Alu	25538	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
149087	chr21	15794371	15794930	+	0	NA	intron (NM_001352560, intron 5 of 23)	intron (NM_001352560, intron 5 of 23)	64668	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
90780	chr17	2071551	2071850	+	0	NA	intron (NM_001282326, intron 3 of 6)	intron (NM_001282326, intron 3 of 6)	15390	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
130213	chr2	84677701	84677900	+	0	NA	intron (NM_001370, intron 41 of 76)	intron (NM_001370, intron 41 of 76)	161302	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
57057	chr12	120901771	120902280	+	0	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	2333	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
38708	chr11	46669451	46670180	+	0	NA	intron (NM_001205121, intron 16 of 16)	intron (NM_001205121, intron 16 of 16)	30804	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
60350	chr13	40793301	40793500	+	0	NA	intron (NM_014252, intron 2 of 6)	Tigger3a|DNA|TcMar-Tigger	3789	NM_014252	10166		NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|LNC-HC|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
23224	chr1	227733471	227733880	+	0	NA	exon (NM_001161465, exon 4 of 6)	exon (NM_001161465, exon 4 of 6)	-1321	NM_001323935	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
207711	chr7	47088951	47089050	+	0	NA	Intergenic	Intergenic	375803	NR_145813	109623468		NR_145813		SNORD151	-	small nucleolar RNA, C/D box 151	snoRNA
193030	chr6	28444521	28444980	+	0	NA	Intergenic	LTR12|LTR|ERV1	-1259	NM_001012455	222696		NM_001012455	ENSG00000187987	ZSCAN23	ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1	zinc finger and SCAN domain containing 23	protein-coding
173186	chr4	6766851	6766950	+	0	NA	Intergenic	AluJb|SINE|Alu	-15827	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
166544	chr3	115099751	115100850	+	0	NA	promoter-TSS (NM_001348805)	promoter-TSS (NM_001348805)	8	NM_001348805	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
130982	chr2	87635071	87635600	+	0	NA	Intergenic	Intergenic	5575	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
40734	chr11	64821801	64822200	+	0	NA	Intergenic	Intergenic	-10706	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
214305	chr7	149195051	149196340	+	0	NA	exon (NM_003575, exon 1 of 8)	exon (NM_003575, exon 1 of 8)	149	NM_001303481	8427		NM_003575	ENSG00000170265	ZNF282	HUB1	zinc finger protein 282	protein-coding
127502	chr2	42282251	42282550	+	0	NA	intron (NM_019063, intron 7 of 22)	intron (NM_019063, intron 7 of 22)	77638	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
175826	chr4	78056351	78056830	+	0	NA	promoter-TSS (NM_001166133)	promoter-TSS (NM_001166133)	-733	NM_025074	80144		NM_020875	ENSG00000138759	FRAS1	FRASRS1	Fraser extracellular matrix complex subunit 1	protein-coding
43341	chr11	76592201	76592600	+	0	NA	Intergenic	Intergenic	77538	NM_001370189	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
217264	chr8	27326201	27328930	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	2001	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
212586	chr7	128947321	128947780	+	0	NA	intron (NM_001098630, intron 6 of 8)	intron (NM_001098630, intron 6 of 8)	6282	NM_001364314	3663		NM_032643	ENSG00000128604	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
200284	chr6	132780751	132781130	+	0	NA	intron (NM_052831, intron 6 of 13)	intron (NM_052831, intron 6 of 13)	-17485	NM_078488	8875		NM_004665	ENSG00000112303	VNN2	FOAP-4|GPI-80	vanin 2	protein-coding
185563	chr5	131375421	131375980	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	111647	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
111706	chr19	4302871	4303580	+	0	NA	promoter-TSS (NM_001169126)	promoter-TSS (NM_001169126)	-794	NM_001308232	126259		NM_144615	ENSG00000167664	TMIGD2	CD28H|IGPR-1|IGPR1	transmembrane and immunoglobulin domain containing 2	protein-coding
51523	chr12	52258421	52258680	+	0	NA	promoter-TSS (NR_146088)	promoter-TSS (NR_146088)	-42	NR_146088	85349		NR_146088	ENSG00000135477	KRT87P	KRT121P|KRTHBP4|psihHbD	keratin 87, pseudogene	pseudo
169996	chr3	179811601	179811850	+	0	NA	intron (NM_016559, intron 11 of 14)	intron (NM_016559, intron 11 of 14)	-86469	NR_110059	101928790		NR_110059	ENSG00000244302	PEX5L-AS2	-	PEX5L antisense RNA 2	ncRNA
107185	chr18	35584571	35584930	+	0	NA	intron (NM_001384444, intron 1 of 11)	MER1B|DNA|hAT-Charlie	3010	NM_001384445	2589		NM_020474	ENSG00000141429	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
110165	chr19	1650301	1650900	+	0	NA	intron (NM_003200, intron 1 of 18)	intron (NM_003200, intron 1 of 18)	2015	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
50	chr1	204951	205680	+	0	NA	non-coding (NR_026823, exon 3 of 3)	non-coding (NR_026823, exon 3 of 3)	1282	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
183455	chr5	79230971	79231730	+	0	NA	Intergenic	AluSp|SINE|Alu	-4781	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
53289	chr12	64404001	64405780	+	0	NA	intron (NM_007235, intron 1 of 24)	CpG	498	NM_007235	11260		NM_007235	ENSG00000184575	XPOT	XPO3	exportin for tRNA	protein-coding
61331	chr13	50528851	50529150	+	0	NA	TTS (NR_109974)	TTS (NR_109974)	-1551	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
44825	chr11	114026321	114026780	+	0	NA	Intergenic	Intergenic	-33161	NM_001354750	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
65339	chr14	50230371	50231000	+	0	NA	intron (NM_006939, intron 1 of 22)	intron (NM_006939, intron 1 of 22)	893	NM_006939	6655		NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
93716	chr17	19507701	19508800	+	0	NA	Intergenic	tRNA-Trp-TGG|tRNA|tRNA	-25604	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
97514	chr17	43940321	43941150	+	0	NA	TTS (NM_001319209)	TTS (NM_001319209)	1539	NM_001319209	5539		NM_002722	ENSG00000108849	PPY	PH|PNP|PP	pancreatic polypeptide	protein-coding
10202	chr1	61933451	61933550	+	0	NA	intron (NM_176877, intron 27 of 42)	AluSx3|SINE|Alu	87425	NR_162146	113219465		NR_162146		MIR12132	-	microRNA 12132	ncRNA
239118	chrY	11298751	11299050	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	1122690	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
144095	chr20	33787201	33787600	+	0	NA	TTS (NR_110623)	TTS (NR_110623)	23699	NR_110623	101929746		NR_110623	ENSG00000230753	ZNF341-AS1	-	ZNF341 antisense RNA 1	ncRNA
155763	chr22	39227771	39227930	+	0	NA	intron (NM_033016, intron 5 of 6)	intron (NM_033016, intron 5 of 6)	13059	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
212807	chr7	130368171	130368530	+	0	NA	intron (NM_001318223, intron 11 of 11)	intron (NM_001318223, intron 11 of 11)	-1223	NR_133928	105375504		NR_133928		LOC105375504	-	uncharacterized LOC105375504	ncRNA
145493	chr20	43945251	43945950	+	0	NA	promoter-TSS (NM_001098798)	promoter-TSS (NM_001098798)	-296	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
53938	chr12	71763501	71764100	+	0	NA	intron (NM_014999, intron 1 of 6)	intron (NM_014999, intron 1 of 6)	8937	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
204515	chr7	4793451	4793830	+	0	NA	non-coding (NR_157345, exon 17 of 17)	non-coding (NR_157345, exon 17 of 17)	-5001	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
163280	chr3	50315201	50315780	+	0	NA	Intergenic	Intergenic	-3109	NM_153281	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
169968	chr3	179260951	179261780	+	0	NA	intron (NM_171828, intron 1 of 3)	CpG	-1474	NR_028135	27094		NM_014407	ENSG00000171121	KCNMB3	BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3	potassium calcium-activated channel subfamily M regulatory beta subunit 3	protein-coding
89422	chr16	88915001	88915200	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	-24171	NR_168285	100129697		NM_001290330		LOC100129697	-	uncharacterized LOC100129697	ncRNA
149314	chr21	29018931	29019950	+	0	NA	promoter-TSS (NM_001320724)	promoter-TSS (NM_001320724)	-69	NM_001320724	10069		NM_016940	ENSG00000156253	RWDD2B	C21orf6|GL011	RWD domain containing 2B	protein-coding
16986	chr1	155974471	155975280	+	0	NA	intron (NM_001350112, intron 1 of 21)	intron (NM_001350112, intron 1 of 21)	3300	NM_001350111	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
59062	chr13	20721471	20722030	+	0	NA	exon (NM_001385225, exon 2 of 2)	exon (NM_001385225, exon 2 of 2)	18051	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
187090	chr5	140259271	140259700	+	0	NA	intron (NM_002622, intron 3 of 3)	intron (NM_002622, intron 3 of 3)	43616	NM_002622	5201		NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
3812	chr1	16757351	16757930	+	0	NA	exon (NM_001271733, exon 14 of 15)	exon (NM_001271733, exon 14 of 15)	6840	NM_001271733	11223		NM_001271733	ENSG00000186715	MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P|MST1P7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1 like (pseudogene)	pseudo
215409	chr7	157577251	157577350	+	0	NA	intron (NM_130842, intron 17 of 21)	intron (NM_130842, intron 17 of 21)	-2878	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
155664	chr22	39022091	39023680	+	0	NA	exon (NM_001363781, exon 2 of 4)	exon (NM_001363781, exon 2 of 4)	1758	NM_152426	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
232085	chr9	133585121	133585380	+	0	NA	intron (NM_001080515, intron 1 of 2)	intron (NM_001080515, intron 1 of 2)	869	NM_001371529	642968		NM_001080515	ENSG00000196990	FAM163B	C9orf166	family with sequence similarity 163 member B	protein-coding
18215	chr1	160997001	160997950	+	0	NA	3' UTR (NM_001382727, exon 10 of 10)	3' UTR (NM_001382727, exon 10 of 10)	23677	NM_001348091	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
82727	chr16	21158151	21159350	+	0	NA	promoter-TSS (NM_001301773).2	promoter-TSS (NM_001301773).2	76	NM_001301775	57146		NM_020422	ENSG00000011638	LDAF1	TMEM159	lipid droplet assembly factor 1	protein-coding
83143	chr16	23183371	23183530	+	0	NA	intron (NM_001039, intron 1 of 12)	CpG	705	NM_001039	6340		NM_001039	ENSG00000166828	SCNN1G	BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|PHA1B3|SCNEG	sodium channel epithelial 1 subunit gamma	protein-coding
234814	chrX	24146671	24146830	+	0	NA	intron (NR_046657, intron 2 of 2)	intron (NR_046657, intron 2 of 2)	-2232	NM_001330327	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
74858	chr15	63540351	63540650	+	0	NA	intron (NR_046342, intron 4 of 15)	intron (NR_046342, intron 4 of 15)	35907	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
230383	chr9	128088271	128088850	+	0	NA	intron (NM_001006641, intron 1 of 9)	L1MEc|LINE|L1	-2904	NM_001006642	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
141920	chr20	1122301	1123100	+	0	NA	intron (NM_178578, intron 2 of 7)	intron (NM_178578, intron 2 of 7)	4098	NM_001323410	9491		NM_006814	ENSG00000125818	PSMF1	PI31	proteasome inhibitor subunit 1	protein-coding
129346	chr2	68759421	68759680	+	0	NA	intron (NM_001364821, intron 1 of 10)	L1MB3|LINE|L1	-15360	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
178012	chr4	139313471	139313630	+	0	NA	intron (NM_057175, intron 1 of 19)	AluSp|SINE|Alu	-10999	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
115138	chr19	14387321	14387600	+	0	NA	intron (NM_001025160, intron 1 of 18)	AluY|SINE|Alu	6016	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
72074	chr15	28899151	28899650	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	13426	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
174952	chr4	49148951	49149840	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	162753	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
23712	chr1	231756801	231757100	+	0	NA	intron (NM_001164540, intron 4 of 10)	intron (NM_001164540, intron 4 of 10)	61567	NR_002227	27184		NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2	ncRNA
196279	chr6	42976301	42976530	+	0	NA	intron (NM_001316313, intron 1 of 16)	AluSz|SINE|Alu	2766	NM_001316313	5190		NM_000287	ENSG00000124587	PEX6	HMLR2|PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
223616	chr8	144317871	144318030	+	0	NA	promoter-TSS (NR_106907)	promoter-TSS (NR_106907)	-635	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
50374	chr12	47219871	47220130	+	0	NA	intron (NM_138371, intron 3 of 3)	AluJb|SINE|Alu	-3557	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
163334	chr3	50389901	50390100	+	0	NA	intron (NM_006030, intron 4 of 37)	intron (NM_006030, intron 4 of 37)	24637	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
193217	chr6	29829971	29830230	+	0	NA	intron (NM_001384290, intron 5 of 6)	intron (NM_001384290, intron 5 of 6)	2275	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
151921	chr22	19029071	19029850	+	0	NA	intron (NR_110533, intron 5 of 5)	CpG	6836	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
123110	chr19	51676221	51677230	+	0	NA	Intergenic	LTR12|LTR|ERV1	-12657	NM_001316994	147650		NM_207324	ENSG00000182310	SPACA6	LET7EH|LINC00085|NCRNA00085|SPACA6P	sperm acrosome associated 6	protein-coding
104883	chr17	81875651	81875950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4463	NM_001301240	396		NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
100314	chr17	59830901	59831400	+	0	NA	intron (NM_030938, intron 10 of 11)	(TTAT)n|Simple_repeat|Simple_repeat	-10116	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
118860	chr19	38650021	38650600	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	2661	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
163001	chr3	49766451	49766950	+	0	NA	intron (NM_153273, intron 1 of 5)	AluSg|SINE|Alu	19494	NM_001242829	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
58648	chr12	132516251	132516650	+	0	NA	intron (NM_001382740, intron 2 of 11)	AluSx|SINE|Alu	11044	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171082	chr3	195483001	195483200	+	0	NA	Intergenic	Intergenic	-40080	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
174602	chr4	40263351	40264180	+	0	NA	Intergenic	MER34|LTR|ERV1	-43420	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
74151	chr15	55269871	55270930	+	0	NA	promoter-TSS (NM_004580)	promoter-TSS (NM_004580)	-1	NM_004580	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
105404	chr17	82772001	82772400	+	0	NA	intron (NM_005993, intron 5 of 38)	intron (NM_005993, intron 5 of 38)	20135	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
186510	chr5	138345071	138345850	+	0	NA	exon (NM_001350195, exon 4 of 5)	exon (NM_001350195, exon 4 of 5)	-7105	NM_001364026	995		NM_001790	ENSG00000158402	CDC25C	CDC25|PPP1R60	cell division cycle 25C	protein-coding
155200	chr22	37826021	37826280	+	0	NA	TTS (NM_003614)	TTS (NM_003614)	2768	NM_003614	8484		NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
238685	chrX	154059601	154060050	+	0	NA	intron (NM_001316337, intron 2 of 4)	intron (NM_001316337, intron 2 of 4)	37144	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
231488	chr9	131386351	131386450	+	0	NA	intron (NM_001384822, intron 1 of 30)	AluJo|SINE|Alu	-7686	NM_001384821	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
189713	chr5	176525921	176526600	+	0	NA	TTS (NM_014901)	TTS (NM_014901)	11142	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
31678	chr10	97445321	97446900	+	0	NA	promoter-TSS (NM_001318365)	promoter-TSS (NM_001318365)	-21	NM_001287803	84287		NM_032327	ENSG00000171307	ZDHHC16	APH2|DHHC-16	zinc finger DHHC-type palmitoyltransferase 16	protein-coding
52084	chr12	54058101	54058300	+	0	NA	promoter-TSS (NR_026655)	promoter-TSS (NR_026655)	-54	NR_026655	440101		NR_026655	ENSG00000248265	FLJ12825	-	uncharacterized LOC440101	ncRNA
23172	chr1	226764601	226765430	+	0	NA	Intergenic	L2a|LINE|L2	-25840	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
5024	chr1	24500571	24500730	+	0	NA	intron (NR_045408, intron 1 of 2)	intron (NR_045408, intron 1 of 2)	-1694	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
66760	chr14	64522421	64523330	+	0	NA	exon (NM_014950, exon 2 of 3)	exon (NM_014950, exon 2 of 3)	17493	NR_110550	102723809		NR_110550	ENSG00000259116	HSPA2-AS1	-	HSPA2 and ZBTB1 antisense RNA 1	ncRNA
183023	chr5	73123501	73124100	+	0	NA	exon (NM_001161342, exon 2 of 4)	exon (NM_001161342, exon 2 of 4)	3225	NM_001161342	134285		NM_173490	ENSG00000157111	TMEM171	PRP2	transmembrane protein 171	protein-coding
120476	chr19	44743151	44743850	+	0	NA	Intergenic	AluSx4|SINE|Alu	-5208	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
112285	chr19	5826301	5826850	+	0	NA	intron (NM_004558, intron 2 of 2)	intron (NM_004558, intron 2 of 2)	12217	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
172612	chr4	2508401	2509130	+	0	NA	intron (NM_001185009, intron 5 of 8)	AluSp|SINE|Alu	-26610	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
45298	chr11	118143901	118144300	+	0	NA	intron (NM_174934, intron 2 of 4)	intron (NM_174934, intron 2 of 4)	1333	NR_024527	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
232804	chr9	136713221	136713730	+	0	NA	intron (NM_152421, intron 1 of 4)	intron (NM_152421, intron 1 of 4)	903	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
231615	chr9	131569451	131570030	+	0	NA	Intergenic	AluSz|SINE|Alu	24217	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
89525	chr16	89179721	89179980	+	0	NA	intron (NM_004933, intron 2 of 13)	intron (NM_004933, intron 2 of 13)	8102	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
165647	chr3	101824451	101824750	+	0	NA	non-coding (NR_145993, exon 7 of 7)	non-coding (NR_145993, exon 7 of 7)	-3390	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
193503	chr6	30573121	30574100	+	0	NA	intron (NM_001090, intron 1 of 23).3	L2c|LINE|L2	2168	NM_001025091	23		NM_001090	ENSG00000204574	ABCF1	ABC27|ABC50	ATP binding cassette subfamily F member 1	protein-coding
238418	chrX	150636001	150636200	+	0	NA	intron (NM_001376907, intron 5 of 13)	intron (NM_001376907, intron 5 of 13)	-56862	NM_001353993	8776		NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
66795	chr14	64714401	64715380	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	10466	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
91597	chr17	5280701	5280900	+	0	NA	Intergenic	L1PA8|LINE|L1	-1484	NM_001291581	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
78692	chr15	96327351	96327450	+	0	NA	promoter-TSS (NR_102744)	promoter-TSS (NR_102744)	-39	NR_102744	644192		NR_102743	ENSG00000247809	NR2F2-AS1	-	NR2F2 antisense RNA 1	ncRNA
70384	chr14	101938651	101939600	+	0	NA	Intergenic	Intergenic	-25448	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
145201	chr20	38891921	38892380	+	0	NA	intron (NM_001172735, intron 3 of 9)	intron (NM_001172735, intron 3 of 9)	-34267	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
3543	chr1	16123701	16124230	+	0	NA	TTS (NM_001329090)	TTS (NM_001329090)	32104	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
175922	chr4	80207901	80208430	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	10662	NM_001099403	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
9729	chr1	53185601	53186200	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-10924	NM_001330589	1376		NM_000098	ENSG00000157184	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
187483	chr5	142155201	142155680	+	0	NA	TTS (NM_030571)	TTS (NM_030571)	46661	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
93176	chr17	17798851	17799150	+	0	NA	intron (NM_030665, intron 3 of 5)	intron (NM_030665, intron 3 of 5)	14545	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
204386	chr7	3027771	3028950	+	0	NA	intron (NM_001324281, intron 1 of 25)	intron (NM_001324281, intron 1 of 25)	15507	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
158979	chr3	10261501	10262350	+	0	NA	intron (NM_014760, intron 3 of 7)	HAL1|LINE|L1	13466	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
202505	chr6	158516251	158516550	+	0	NA	Intergenic	CpG	-20240	NM_020823	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
210319	chr7	99487921	99488250	+	0	NA	TTS (NM_001351000)	TTS (NM_001351000)	12196	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
103153	chr17	77419101	77419300	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	14123	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
101785	chr17	73201801	73202200	+	0	NA	intron (NM_018714, intron 7 of 13)	intron (NM_018714, intron 7 of 13)	8945	NM_018714	9382		NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
10862	chr1	77977371	77977600	+	0	NA	intron (NR_146539, intron 1 of 22)	AluSx3|SINE|Alu	1587	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
155081	chr22	37561551	37562150	+	0	NA	intron (NM_152243, intron 1 of 2)	CpG	1370	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
189614	chr5	175970371	175971180	+	0	NA	Intergenic	AluSq|SINE|Alu	-2460	NM_032361	84321		NM_032361	ENSG00000051596	THOC3	THO3|hTREX45	THO complex subunit 3	protein-coding
169892	chr3	177591151	177591700	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	149504	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
73279	chr15	41853571	41853930	+	0	NA	exon (NM_016642, exon 58 of 68)	exon (NM_016642, exon 58 of 68)	12801	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
186767	chr5	139334101	139334600	+	0	NA	Intergenic	Intergenic	-7482	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
145080	chr20	38653051	38653350	+	0	NA	Intergenic	(GAT)n|Simple_repeat|Simple_repeat	51391	NM_001164431	343578		NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
29345	chr10	69430201	69430400	+	0	NA	Intergenic	AluY|SINE|Alu	-13382	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
221878	chr8	128518471	128518630	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	46129	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
22197	chr1	212413951	212415730	+	0	NA	promoter-TSS (NM_018252)	promoter-TSS (NM_018252)	46	NR_165303	55248		NM_018252	ENSG00000065600	PACC1	ASOR|C1orf75|PAC|PAORAC|TMEM206|hPAC|hTMEM206	proton activated chloride channel 1	protein-coding
214817	chr7	151231751	151232800	+	0	NA	promoter-TSS (NM_019015)	promoter-TSS (NM_019015)	-208	NM_001284295	54480		NM_019015	ENSG00000033100	CHPF2	CSGLCA-T|CSGlcAT|ChSy-3|chPF-2	chondroitin polymerizing factor 2	protein-coding
31367	chr10	93701721	93703480	+	0	NA	promoter-TSS (NR_144635)	promoter-TSS (NR_144635)	-8	NM_145246	118924		NM_145246	ENSG00000148690	FRA10AC1	C10orf4|F26C11.1-like|FRA10A|NEDGFC	FRA10A associated CGG repeat 1	protein-coding
86877	chr16	67976421	67976680	+	0	NA	intron (NM_001370198, intron 8 of 9)	intron (NM_001370198, intron 8 of 9)	3949	NM_001370198	64180		NM_022357	ENSG00000141096	DPEP3	MBD3	dipeptidase 3	protein-coding
46009	chr11	121589821	121590080	+	0	NA	intron (NM_003105, intron 29 of 47)	intron (NM_003105, intron 29 of 47)	-108161	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
162382	chr3	48058921	48059780	+	0	NA	intron (NM_001384729, intron 1 of 20)	AluSx3|SINE|Alu	29498	NM_001384861	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
130886	chr2	87421071	87421300	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-34242	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
108715	chr18	77080121	77080800	+	0	NA	intron (NM_001025100, intron 2 of 3)	MER20|DNA|hAT-Charlie	52323	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
41732	chr11	66667571	66668330	+	0	NA	3' UTR (NM_001198844, exon 3 of 3)	3' UTR (NM_001198844, exon 3 of 3)	9937	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
229843	chr9	125889371	125889930	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	141467	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
63742	chr14	21224571	21224830	+	0	NA	intron (NM_001077443, intron 4 of 7)	intron (NM_001077443, intron 4 of 7)	-17800	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
124441	chr19	58498771	58501030	+	0	NA	intron (NM_001321196, intron 6 of 9)	intron (NM_001321196, intron 6 of 9)	12092	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
201111	chr6	142860301	142861100	+	0	NA	intron (NM_006734, intron 1 of 9)	MER1A|DNA|hAT-Charlie	84476	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
212315	chr7	127251621	127252230	+	0	NA	intron (NM_001371083, intron 1 of 11)	CpG	330	NM_001371088	2918		NM_000845	ENSG00000179603	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	glutamate metabotropic receptor 8	protein-coding
46663	chr11	128713201	128713850	+	0	NA	intron (NM_001271010, intron 1 of 9)	MIR|SINE|MIR	-17502	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
217950	chr8	38179951	38180250	+	0	NA	intron (NM_001204878, intron 1 of 3)	intron (NM_001204878, intron 1 of 3)	3245	NM_004874	9530		NM_004874	ENSG00000156735	BAG4	BAG-4|SODD	BAG cochaperone 4	protein-coding
130507	chr2	85598071	85599000	+	0	NA	TTS (NM_001031738)	TTS (NM_001031738)	2790	NM_016494	51255		NM_016494	ENSG00000168894	RNF181	HSPC238	ring finger protein 181	protein-coding
200509	chr6	135675901	135676150	+	0	NA	intron (NR_152842, intron 4 of 5)	intron (NR_152842, intron 4 of 5)	-175676	NM_018945	27115		NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
189136	chr5	171307051	171307350	+	0	NA	Intergenic	MIRc|SINE|MIR	-2048	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
34509	chr10	132575251	132576080	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	37878	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
11204	chr1	88800201	88800700	+	0	NA	intron (NM_001320707, intron 8 of 20)	MER119|DNA|hAT-Charlie	91117	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
210013	chr7	93228301	93229000	+	0	NA	intron (NM_001346642, intron 1 of 9)	intron (NM_001346642, intron 1 of 9)	-2181	NM_001039372	253012		NM_198151	ENSG00000188175	HEPACAM2	MIKI	HEPACAM family member 2	protein-coding
69488	chr14	95495351	95496650	+	0	NA	intron (NM_001384283, intron 1 of 9)	intron (NM_001384283, intron 1 of 9)	4540	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
161554	chr3	42662251	42662550	+	0	NA	intron (NM_145166, intron 3 of 5)	intron (NM_145166, intron 3 of 5)	-8012	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
117106	chr19	19196751	19197280	+	0	NA	exon (NM_001278728, exon 3 of 8)	exon (NM_001278728, exon 3 of 8)	4080	NM_001370234	8625		NM_003721	ENSG00000064490	RFXANK	ANKRA1|BLS|F14150_1|RFX-B	regulatory factor X associated ankyrin containing protein	protein-coding
76457	chr15	74839251	74839750	+	0	NA	intron (NM_001284365, intron 7 of 15)	intron (NM_001284365, intron 7 of 15)	1207	NR_106942	102465531		NR_106942	ENSG00000275411	MIR6882	hsa-mir-6882	microRNA 6882	ncRNA
217600	chr8	29664921	29665780	+	0	NA	Intergenic	Intergenic	82759	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
88081	chr16	81486021	81486480	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-9104	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
67056	chr14	67697221	67697500	+	0	NA	Intergenic	L2b|LINE|L2	-1596	NM_016026	51109		NM_016026	ENSG00000072042	RDH11	ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1	retinol dehydrogenase 11	protein-coding
222182	chr8	133027171	133027330	+	0	NA	intron (NM_003235, intron 40 of 47)	intron (NM_003235, intron 40 of 47)	19331	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
208181	chr7	64879071	64879230	+	0	NA	Intergenic	SST1|Satellite|centr	-3363	NM_001385643	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
156567	chr22	41458321	41458580	+	0	NA	Intergenic	AluJb|SINE|Alu	10242	NM_032758	84844		NM_032758	ENSG00000100410	PHF5A	INI|Rds3|SAP14b|SF3B7|SF3b14b|bK223H9.2	PHD finger protein 5A	protein-coding
175044	chr4	52894571	52894730	+	0	NA	intron (NM_152540, intron 7 of 8)	intron (NM_152540, intron 7 of 8)	32333	NM_023940	65997		NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding
127987	chr2	46924071	46924230	+	0	NA	intron (NM_001288953, intron 2 of 20)	AluJr|SINE|Alu	-8038	NM_001171507	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
137064	chr2	190900421	190900680	+	0	NA	intron (NM_014905, intron 3 of 17)	intron (NM_014905, intron 3 of 17)	19729	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
82845	chr16	21510771	21510930	+	0	NA	Intergenic	AluSg|SINE|Alu	-4715	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
80109	chr16	2024801	2025530	+	0	NA	Intergenic	Intergenic	-1737	NM_004785	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
183329	chr5	76724001	76724200	+	0	NA	intron (NM_001992, intron 1 of 1)	AluJo|SINE|Alu	7974	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
146711	chr20	50585571	50585730	+	0	NA	promoter-TSS (NR_030375)	promoter-TSS (NR_030375)	-136	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
110289	chr19	1828771	1829400	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	6996	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
63308	chr13	113992871	113994080	+	0	NA	intron (NM_001320822, intron 21 of 23).2	AluSx|SINE|Alu	-19399	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
76935	chr15	78069701	78070800	+	0	NA	intron (NM_144572, intron 1 of 12)	L2c|LINE|L2	7402	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
237267	chrX	110413051	110413380	+	0	NA	intron (NM_001385449, intron 1 of 3)	L2c|LINE|L2	-5842	NM_020769	57529		NM_020769	ENSG00000243978	RTL9	MAR9|MART9|RGAG1|SIRH10	retrotransposon Gag like 9	protein-coding
116461	chr19	18085571	18085950	+	0	NA	intron (NM_153701, intron 1 of 9)	AluSx1|SINE|Alu	1174	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
22029	chr1	210332601	210333580	+	0	NA	intron (NM_001170580, intron 1 of 11).2	Charlie3|DNA|hAT-Charlie	3724	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
107269	chr18	42298621	42299050	+	0	NA	intron (NR_046457, intron 4 of 6)	intron (NR_046457, intron 4 of 6)	112167	NR_046458	284260		NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
104216	chr17	80591151	80591250	+	0	NA	intron (NM_020761, intron 1 of 33)	(CCCCTCTCCT)n|Simple_repeat|Simple_repeat	46362	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
160756	chr3	32570021	32571480	+	0	NA	exon (NM_016141, exon 1 of 13)	exon (NM_016141, exon 1 of 13)	108	NM_016141	51143		NM_016141	ENSG00000144635	DYNC1LI1	DLC-A|DLIC-1|DNCLI1|LIC1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding
105172	chr17	82270151	82271130	+	0	NA	intron (NM_139062, intron 1 of 9)	intron (NM_139062, intron 1 of 9)	3060	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
55909	chr12	109734001	109734400	+	0	NA	TTS (NR_026661)	TTS (NR_026661)	20375	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
98440	chr17	46875971	46876130	+	0	NA	intron (NM_001320458, intron 3 of 4).2	intron (NM_001320458, intron 3 of 4).2	24467	NM_003396	7484		NM_003396	ENSG00000158955	WNT9B	WNT14B|WNT15	Wnt family member 9B	protein-coding
51901	chr12	53620771	53620930	+	0	NA	intron (NR_159377, intron 1 of 14)	L3|LINE|CR1	5140	NM_001366562	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
44747	chr11	111997321	111997580	+	0	NA	intron (NM_033425, intron 13 of 15)	AluSq|SINE|Alu	20141	NM_033425	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
119593	chr19	40736901	40737100	+	0	NA	exon (NM_025194, exon 5 of 7)	exon (NM_025194, exon 5 of 7)	13477	NR_148549	284325		NM_198476	ENSG00000188493	ACTMAP	C19orf54	actin maturation protease	protein-coding
159513	chr3	14406621	14406880	+	0	NA	intron (NR_103507, intron 1 of 13)	intron (NR_103507, intron 1 of 13)	4144	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
116790	chr19	18517671	18518430	+	0	NA	intron (NM_006532, intron 1 of 11)	AluSq2|SINE|Alu	4020	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
6642	chr1	28934421	28934680	+	0	NA	intron (NM_001376013, intron 1 of 20)	L1MC3|LINE|L1	19974	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
156710	chr22	41763021	41763350	+	0	NA	exon (NM_152513, exon 19 of 31)	exon (NM_152513, exon 19 of 31)	-37494	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
51372	chr12	51847851	51848150	+	0	NA	promoter-TSS (NR_135803)	promoter-TSS (NR_135803)	-223	NR_135803	105369971		NR_135803	ENSG00000259887	FIGNL2-DT	-	FIGNL2 divergent transcript	ncRNA
8357	chr1	40259351	40260030	+	0	NA	intron (NM_005857, intron 1 of 9)	AluJo|SINE|Alu	1454	NM_005857	10269		NM_005857	ENSG00000084073	ZMPSTE24	FACE-1|FACE1|HGPS|PRO1|RSDM1|STE24|Ste24p	zinc metallopeptidase STE24	protein-coding
174856	chr4	48668351	48668650	+	0	NA	intron (NM_015030, intron 3 of 63)	intron (NM_015030, intron 3 of 63)	111779	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
202164	chr6	155306801	155307450	+	0	NA	intron (NR_146725, intron 2 of 8)	AluJb|SINE|Alu	7359	NM_001350501	51106		NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
228759	chr9	110183221	110183500	+	0	NA	Intergenic	Intergenic	24799	NM_001012993	401546		NM_001012993	ENSG00000188959	C9orf152	bA470J20.2	chromosome 9 open reading frame 152	protein-coding
146442	chr20	49672271	49672630	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	41428	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
16961	chr1	155939251	155940250	+	0	NA	Intergenic	AluJb|SINE|Alu	-1888	NM_181885	339403		NM_181885	ENSG00000173080	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin family peptide/INSL5 receptor 4	protein-coding
236941	chrX	100636301	100636900	+	0	NA	5' UTR (NM_001278740, exon 1 of 8)	5' UTR (NM_001278740, exon 1 of 8)	206	NM_001278740	7105		NM_003270	ENSG00000000003	TSPAN6	T245|TM4SF6|TSPAN-6	tetraspanin 6	protein-coding
113548	chr19	10230121	10230800	+	0	NA	promoter-TSS (NR_036206)	promoter-TSS (NR_036206)	47	NR_036206	100422925		NR_036206	ENSG00000264266	MIR4322	-	microRNA 4322	ncRNA
33988	chr10	124669971	124670330	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-33878	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
40575	chr11	64357651	64358380	+	0	NA	TTS (NM_032251)	TTS (NM_032251)	-1147	NM_001300802	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
67821	chr14	73829471	73829650	+	0	NA	intron (NR_135238, intron 1 of 1)	LTR16E1|LTR|ERVL	575	NR_135238	100506498		NR_135238	ENSG00000258586	LINC02274	-	long intergenic non-protein coding RNA 2274	ncRNA
234763	chrX	23766701	23767350	+	0	NA	Intergenic	MER52A|LTR|ERV1	-16133	NR_027783	6303		NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
169725	chr3	172181821	172182280	+	0	NA	intron (NM_022763, intron 3 of 25)	intron (NM_022763, intron 3 of 25)	141519	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
33239	chr10	114239301	114239800	+	0	NA	promoter-TSS (NM_001320804)	promoter-TSS (NM_001320804)	-64	NM_001320804	340706		NM_198496	ENSG00000165816	VWA2	AMACO|CCSP-2|CCSP2|NET42	von Willebrand factor A domain containing 2	protein-coding
100035	chr17	58000651	58000930	+	0	NA	TTS (NR_034041)	TTS (NR_034041)	6456	NM_001078166	6426		NM_006924	ENSG00000136450	SRSF1	ASF|NEDFBA|SF2|SF2p33|SFRS1|SRp30a	serine and arginine rich splicing factor 1	protein-coding
48798	chr12	11958471	11959000	+	0	NA	Intergenic	Intergenic	-91126	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
15175	chr1	149103001	149104280	+	0	NA	Intergenic	CpG	-21329	NM_001037675	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
163015	chr3	49793621	49794180	+	0	NA	exon (NM_001007540, exon 11 of 19)	exon (NM_001007540, exon 11 of 19)	5973	NM_001007540	389118		NM_001007540	ENSG00000187492	CDHR4	CDH29|PRO34300	cadherin related family member 4	protein-coding
102333	chr17	75412401	75412920	+	0	NA	Intergenic	Intergenic	6591	NR_037449	100500841		NR_037449	ENSG00000264511	MIR3678	mir-3678	microRNA 3678	ncRNA
26334	chr10	15169701	15170680	+	0	NA	Intergenic	Intergenic	-1497	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
67128	chr14	68616371	68616530	+	0	NA	intron (NM_001321818, intron 10 of 10)	L1MEc|LINE|L1	12337	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
80307	chr16	2270951	2271250	+	0	NA	promoter-TSS (NR_030636)	promoter-TSS (NR_030636)	387	NR_037448	100500812		NR_037448	ENSG00000266643	MIR3677	mir-3677	microRNA 3677	ncRNA
114281	chr19	11594971	11595550	+	0	NA	Intergenic	Intergenic	-2223	NM_001290084	199692		NM_145295	ENSG00000198551	ZNF627	-	zinc finger protein 627	protein-coding
60885	chr13	46134871	46135330	+	0	NA	intron (NM_002298, intron 13 of 15)	AluSz|SINE|Alu	-30024	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
158946	chr3	10164571	10166080	+	0	NA	intron (NM_001570, intron 1 of 12)	CpG	406	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
158690	chr3	5197171	5198500	+	0	NA	intron (NM_014674, intron 2 of 11)	intron (NM_014674, intron 2 of 11)	10128	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
118610	chr19	36791451	36792150	+	0	NA	Intergenic	CpG	-5750	NR_040027	284408		NR_040027	ENSG00000267254	ZNF790-AS1	-	ZNF790 antisense RNA 1	ncRNA
7547	chr1	34982551	34982650	+	0	NA	intron (NM_001195156, intron 2 of 2)	AluSg|SINE|Alu	2747	NM_001195156	100506144		NM_001195156	ENSG00000243749	TMEM35B	ZMYM6NB	transmembrane protein 35B	protein-coding
125529	chr2	12931271	12931530	+	0	NA	Intergenic	Intergenic	75613	NR_038434	100506474		NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
97353	chr17	43293451	43294430	+	0	NA	Intergenic	AluSx|SINE|Alu	2675	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
218116	chr8	41513701	41513900	+	0	NA	Intergenic	L2c|LINE|L2	-15461	NM_032336	84296		NM_032336	ENSG00000147536	GINS4	SLD5	GINS complex subunit 4	protein-coding
172998	chr4	4269121	4270480	+	0	NA	intron (NM_017816, intron 8 of 9)	L1MA9|LINE|L1	20221	NM_001145725	55646		NM_017816	ENSG00000145220	LYAR	ZC2HC2|ZLYAR	Ly1 antibody reactive	protein-coding
167628	chr3	129593251	129594380	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	12861	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
111569	chr19	4057921	4059000	+	0	NA	intron (NM_015898, intron 1 of 2)	intron (NM_015898, intron 1 of 2)	7069	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
89899	chr16	89691401	89692530	+	0	NA	intron (NM_052987, intron 5 of 12)	intron (NM_052987, intron 5 of 12)	5276	NM_001098533	8558		NM_003674	ENSG00000185324	CDK10	ALSAS|PISSLRE	cyclin dependent kinase 10	protein-coding
17289	chr1	156435271	156436730	+	0	NA	Intergenic	CpG	-6452	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
221657	chr8	125949551	125950150	+	0	NA	intron (NR_038446, intron 1 of 1)	MER92-int|LTR|ERV1	1347	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
124712	chr2	3602271	3602930	+	0	NA	intron (NM_001255985, intron 1 of 7)	L2a|LINE|L2	694	NM_001255985	78989		NM_024027	ENSG00000118004	COLEC11	3MC2|CL-11|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
232210	chr9	134356971	134357680	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-21970	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
223866	chr9	157021	157300	+	0	NA	intron (NM_018491, intron 6 of 14)	intron (NM_018491, intron 6 of 14)	21896	NM_018491	55871		NM_018491	ENSG00000172785	ZNG1A	CBWD1|COBP	Zn regulated GTPase metalloprotein activator 1A	protein-coding
175450	chr4	71266801	71267000	+	0	NA	intron (NM_001134742, intron 3 of 24)	L2a|LINE|L2	-72120	NM_003759	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
14363	chr1	144074951	144075530	+	0	NA	Intergenic	Intergenic	-101721	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
67783	chr14	73750851	73751900	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-7372	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
191256	chr6	5997651	5998300	+	0	NA	TTS (NM_001278711)	TTS (NM_001278711)	6069	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
114000	chr19	10853001	10853200	+	0	NA	intron (NM_001136482, intron 2 of 6)	AluJr|SINE|Alu	4685	NM_001136482	255809		NM_001136482	ENSG00000214212	C19orf38	HIDE1	chromosome 19 open reading frame 38	protein-coding
32947	chr10	110395801	110396200	+	0	NA	Intergenic	Intergenic	-91080	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
94623	chr17	29894771	29894930	+	0	NA	intron (NM_001282129, intron 1 of 15)	intron (NM_001282129, intron 1 of 15)	-35053	NM_001145053	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
204501	chr7	4774921	4776380	+	0	NA	promoter-TSS (NM_001364858)	promoter-TSS (NM_001364858)	27	NM_014855	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
211186	chr7	102599201	102599750	+	0	NA	intron (NM_001079877, intron 8 of 19)	AluY|SINE|Alu	17281	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
17938	chr1	160336871	160337030	+	0	NA	intron (NM_001098398, intron 3 of 32)	L2a|LINE|L2	6300	NM_001098398	1314		NM_004371	ENSG00000122218	COPA	AILJK|HEP-COP|alpha-COP	COPI coat complex subunit alpha	protein-coding
111680	chr19	4263401	4263600	+	0	NA	intron (NM_018074, intron 6 of 7)	MLT1J2|LTR|ERVL-MaLR	-15569	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
120449	chr19	44513071	44513230	+	0	NA	intron (NM_001102600, intron 7 of 10)	intron (NM_001102600, intron 7 of 10)	-12628	NM_001291633	7733		NM_013256	ENSG00000167384	ZNF180	HHZ168	zinc finger protein 180	protein-coding
149035	chr21	14686501	14687150	+	0	NA	Intergenic	Intergenic	-43718	NM_001256579	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
56264	chr12	112011001	112011400	+	0	NA	intron (NM_138341, intron 1 of 9)	MER52C|LTR|ERV1	1965	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
221907	chr8	128683501	128684280	+	0	NA	Intergenic	Intergenic	-119211	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
105068	chr17	82091271	82091730	+	0	NA	exon (NM_004104, exon 9 of 43)	exon (NM_004104, exon 9 of 43)	-1360	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
152483	chr22	20850351	20850650	+	0	NA	intron (NM_001362863, intron 1 of 53)	AluY|SINE|Alu	8311	NM_058004	5297		NM_002650	ENSG00000241973	PI4KA	GIDID2|PI4K-ALPHA|PIK4CA|PMGYCHA|SPG84|pi4K230	phosphatidylinositol 4-kinase alpha	protein-coding
115894	chr19	16583071	16583230	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-10735	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
155814	chr22	39318511	39320530	+	0	NA	promoter-TSS (NR_002439)	promoter-TSS (NR_002439)	103	NM_000967	6122		NM_000967	ENSG00000100316	RPL3	ASC-1|L3|TARBP-B|uL3	ribosomal protein L3	protein-coding
8887	chr1	43706871	43708450	+	0	NA	promoter-TSS (NR_033827)	promoter-TSS (NR_033827)	124	NM_174966	6487		NM_006279	ENSG00000126091	ST3GAL3	DEE15|EIEE15|MRT12|SIAT6|ST3GALII|ST3Gal III|ST3GalIII|ST3N	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding
136191	chr2	174553671	174555880	+	0	NA	Intergenic	Intergenic	3297	NR_004394	26827		NR_004394	ENSG00000206625	RNU6-1	RNU6|RNU6A|U6|U6-1	RNA, U6 small nuclear 1	snRNA
71638	chr14	106764871	106765550	+	0	NA	Intergenic	L1PBb|LINE|L1	85789	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
148691	chr21	6312001	6312200	+	0	NA	Intergenic	Intergenic	-44764	NM_001322036	102724951		NM_001322036	ENSG00000276077	LINC03105	-	long intergenic non-protein coding RNA 3105	ncRNA
234664	chrX	20144501	20145150	+	0	NA	Intergenic	AluJr|SINE|Alu	-2987	NM_001412	1964		NM_001412	ENSG00000173674	EIF1AX	EIF1A|EIF1AP1|EIF4C|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A X-linked	protein-coding
172966	chr4	3872401	3872680	+	0	NA	Intergenic	Intergenic	82888	NR_130742	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
26653	chr10	22586251	22586850	+	0	NA	intron (NM_001330062, intron 4 of 9)	AluSx|SINE|Alu	127558	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
35161	chr11	764551	764650	+	0	NA	intron (NM_006755, intron 7 of 7)	intron (NM_006755, intron 7 of 7)	12887	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
31169	chr10	91103871	91104030	+	0	NA	Intergenic	Intergenic	49130	NR_002779	119369		NM_153205		NUDT9P1	C10orf98|bA56M3.1	nudix hydrolase 9 pseudogene 1	pseudo
73759	chr15	45457581	45458450	+	0	NA	Intergenic	L1ME3A|LINE|L1	24965	NR_030599	100126311		NR_030599	ENSG00000284386	MIR147B	MIRN147B|mir-147b	microRNA 147b	ncRNA
164936	chr3	71220051	71220600	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	24752	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
79944	chr16	1761571	1762330	+	0	NA	intron (NM_001318852, intron 13 of 31)	intron (NM_001318852, intron 13 of 31)	9759	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
147973	chr20	62984921	62985180	+	0	NA	Intergenic	Intergenic	21914	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
132234	chr2	102358651	102358950	+	0	NA	intron (NM_001371424, intron 1 of 8)	intron (NM_001371424, intron 1 of 8)	2517	NM_001282399	8809		NM_003855	ENSG00000115604	IL18R1	CD218a|CDw218a|IL-18R-alpha|IL-18Ralpha|IL-1Rrp|IL18RA|IL18Ralpha2|IL1RRP	interleukin 18 receptor 1	protein-coding
13057	chr1	111448171	111449950	+	0	NA	promoter-TSS (NM_001688)	promoter-TSS (NM_001688)	196	NM_024102	79084		NM_024102	ENSG00000116455	WDR77	HKMT1069|MEP-50|MEP50|Nbla10071|p44|p44/Mep50	WD repeat domain 77	protein-coding
207705	chr7	45939901	45941080	+	0	NA	Intergenic	LTR12|LTR|ERV1	-19218	NM_000598	3486		NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP-3|IBP3|IGFBP-3	insulin like growth factor binding protein 3	protein-coding
8585	chr1	41383451	41384480	+	0	NA	TTS (NM_001291281)	TTS (NM_001291281)	-8296	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
41474	chr11	66138451	66138750	+	0	NA	intron (NM_018026, intron 1 of 23)	MER96|DNA|hAT-Tip100	68328	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
24085	chr1	235330221	235331730	+	0	NA	intron (NM_001371478, intron 1 of 3)	intron (NM_001371478, intron 1 of 3)	1967	NM_001371478	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
22399	chr1	219457851	219457950	+	0	NA	intron (NR_135822, intron 2 of 3)	L1PA2|LINE|L1	99424	NR_135822	102723886		NR_135822		LYPLAL1-AS1	-	LYPLAL1 antisense RNA 1	ncRNA
218634	chr8	56218171	56218330	+	0	NA	non-coding (NR_133934, exon 6 of 6)	non-coding (NR_133934, exon 6 of 6)	6461	NM_001011671	79145		NM_024300	ENSG00000170791	CHCHD7	COX23	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding
55136	chr12	98606671	98606830	+	0	NA	TTS (NM_002635)	TTS (NM_002635)	7115	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
223898	chr9	316671	316830	+	0	NA	intron (NM_203447, intron 6 of 47)	intron (NM_203447, intron 6 of 47)	43702	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
113989	chr19	10832371	10832530	+	0	NA	TTS (NM_001190716)	TTS (NM_001190716)	3290	NR_104015	11018		NM_006858	ENSG00000099203	TMED1	IL1RL1LG|Il1rl1l|Tp24|p24g1	transmembrane p24 trafficking protein 1	protein-coding
217422	chr8	28398951	28399250	+	0	NA	Intergenic	Intergenic	-12640	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
214311	chr7	149237771	149237930	+	0	NA	Intergenic	AluJr|SINE|Alu	-1801	NM_012256	7988		NM_012256	ENSG00000170260	ZNF212	C2H2-150|ZNF182|ZNFC150	zinc finger protein 212	protein-coding
126058	chr2	25591971	25592700	+	0	NA	intron (NM_001320935, intron 4 of 17)	L1M5|LINE|L1	57887	NM_001256308	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
107137	chr18	35123571	35123730	+	0	NA	intron (NR_046177, intron 4 of 6)	intron (NR_046177, intron 4 of 6)	82237	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
237139	chrX	106987421	106987700	+	0	NA	intron (NM_024657, intron 3 of 16)	intron (NM_024657, intron 3 of 16)	12652	NM_001085354	79710		NM_024657	ENSG00000133131	MORC4	ZCW4|ZCWCC2|dJ75H8.2	MORC family CW-type zinc finger 4	protein-coding
35868	chr11	2383901	2385000	+	0	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-6458	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
36975	chr11	11826201	11826490	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-15627	NM_001330208	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
122445	chr19	49488771	49489530	+	0	NA	promoter-TSS (NR_000021)	promoter-TSS (NR_000021)	-816	NR_000021	26819		NR_000021	ENSG00000201675	SNORD32A	RNU32|U32|U32A	small nucleolar RNA, C/D box 32A	snoRNA
7845	chr1	36343671	36343830	+	0	NA	intron (NM_032017, intron 10 of 11)	intron (NM_032017, intron 10 of 11)	-19596	NM_018166	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
80936	chr16	3821901	3822100	+	0	NA	intron (NM_004380, intron 2 of 30)	AluSx|SINE|Alu	58120	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
197362	chr6	73464301	73464500	+	0	NA	intron (NM_133645, intron 1 of 12)	intron (NM_133645, intron 1 of 12)	2663	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
229221	chr9	114902621	114903430	+	0	NA	3' UTR (NM_001244, exon 4 of 4)	3' UTR (NM_001244, exon 4 of 4)	27566	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
96205	chr17	39761801	39762130	+	0	NA	3' UTR (NM_001257414, exon 5 of 5)	3' UTR (NM_001257414, exon 5 of 5)	16260	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
202932	chr6	160462371	160463280	+	0	NA	Intergenic	LTR78|LTR|ERV1	48299	NR_028092	80350		NM_024492	ENSG00000290613	LPAL2	APOA2|APOAL|APOARGC|apo(a)rg-C	lipoprotein(a) like 2 (pseudogene)	pseudo
116338	chr19	17847411	17849230	+	0	NA	promoter-TSS (NM_000215)	promoter-TSS (NM_000215)	-338	NM_000215	3718		NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
228931	chr9	113232801	113233480	+	0	NA	intron (NM_001859, intron 1 of 4)	MIR|SINE|MIR	11596	NM_001859	1317		NM_001859	ENSG00000136868	SLC31A1	COPT1|CTR1|NSCT	solute carrier family 31 member 1	protein-coding
105096	chr17	82125151	82125450	+	0	NA	intron (NM_001367828, intron 16 of 16)	AluJo|SINE|Alu	-27064	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
218733	chr8	58789321	58789580	+	0	NA	Intergenic	LTR16|LTR|ERVL	-129597	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
64696	chr14	33792671	33792930	+	0	NA	intron (NM_173159, intron 9 of 11)	intron (NM_173159, intron 9 of 11)	83863	NR_132771	106635522		NR_132771		SNORA89	-	small nucleolar RNA, H/ACA box 89	snoRNA
137408	chr2	196264851	196265350	+	0	NA	TTS (NR_110225)	TTS (NR_110225)	5076	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
42676	chr11	72593871	72594030	+	0	NA	intron (NM_001243784, intron 6 of 30)	FLAM_C|SINE|Alu	21180	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
178157	chr4	142352971	142353950	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	-47516	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
18155	chr1	160773251	160773350	+	0	NA	Intergenic	Intergenic	-22874	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
220424	chr8	100289571	100289730	+	0	NA	intron (NM_001280539, intron 2 of 10)	L1ME3A|LINE|L1	12543	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
213082	chr7	131094691	131095650	+	0	NA	intron (NR_109852, intron 2 of 5)	MER1A|DNA|hAT-Charlie	11860	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
132380	chr2	105771801	105772080	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	26877	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
106695	chr18	23318071	23318230	+	0	NA	intron (NR_148385, intron 12 of 13)	L1M4|LINE|L1	119811	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
47680	chr12	6354671	6355030	+	0	NA	intron (NM_001159575, intron 6 of 12)	intron (NM_001159575, intron 6 of 12)	-12774	NM_001346092	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
209958	chr7	92680601	92680800	+	0	NA	intron (NM_001145306, intron 4 of 7)	intron (NM_001145306, intron 4 of 7)	-90310	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
6770	chr1	30748201	30749000	+	0	NA	intron (NM_006762, intron 1 of 7)	intron (NM_006762, intron 1 of 7)	9174	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
20985	chr1	202642401	202642830	+	0	NA	intron (NM_177402, intron 1 of 8)	CpG	838	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
225544	chr9	35825721	35826550	+	0	NA	exon (NM_001012446, exon 2 of 7)	exon (NM_001012446, exon 2 of 7)	2597	NM_001012446	392307		NM_001012446	ENSG00000204930	FAM221B	C9orf128	family with sequence similarity 221 member B	protein-coding
139890	chr2	230697721	230697980	+	0	NA	intron (NR_040038, intron 1 of 3)	MER92-int|LTR|ERV1	2679	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
68427	chr14	81218851	81220300	+	0	NA	intron (NM_201595, intron 1 of 8)	intron (NM_201595, intron 1 of 8)	1384	NM_001278940	2957		NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding
34421	chr10	132405071	132405880	+	0	NA	exon (NM_001098637, exon 2 of 3)	exon (NM_001098637, exon 2 of 3)	8275	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
12314	chr1	100931871	100932380	+	0	NA	intron (NM_133496, intron 8 of 10)	intron (NM_133496, intron 8 of 10)	36035	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
232037	chr9	133408021	133408330	+	0	NA	intron (NM_020385, intron 6 of 7)	AluJb|SINE|Alu	-6162	NR_024514	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
102039	chr17	74863451	74863550	+	0	NA	intron (NM_001258012, intron 10 of 11)	intron (NM_001258012, intron 10 of 11)	-2657	NM_001278553	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
97634	chr17	44188451	44188550	+	0	NA	intron (NR_148387, intron 3 of 5)	intron (NR_148387, intron 3 of 5)	1297	NM_001353175	79089		NM_024107	ENSG00000168591	TMUB2	FP2653	transmembrane and ubiquitin like domain containing 2	protein-coding
74211	chr15	56206871	56207350	+	0	NA	intron (NM_001370561, intron 4 of 11)	L1MA3|LINE|L1	-17178	NM_001368074	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
84036	chr16	29538421	29538880	+	0	NA	Intergenic	Intergenic	-32776	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
27921	chr10	41904971	41905150	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	462985	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
209608	chr7	77657751	77658100	+	0	NA	non-coding (NR_134254, exon 2 of 2)	non-coding (NR_134254, exon 2 of 2)	38340	NR_134254	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
38013	chr11	35097001	35097200	+	0	NA	Intergenic	Intergenic	40932	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
215462	chr7	158011071	158011430	+	0	NA	intron (NM_130842, intron 10 of 21)	intron (NM_130842, intron 10 of 21)	156665	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
221422	chr8	123765301	123765500	+	0	NA	Intergenic	Intergenic	-3039	NM_144963	157769		NM_144963	ENSG00000176853	FAM91A1	-	family with sequence similarity 91 member A1	protein-coding
90265	chr17	977321	977580	+	0	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	2326	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
32769	chr10	104335021	104335500	+	0	NA	intron (NM_001272013, intron 1 of 1)	intron (NM_001272013, intron 1 of 1)	-1355	NM_033397	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
112474	chr19	6410851	6411230	+	0	NA	intron (NM_001321601, intron 2 of 3)	L1ME4b|LINE|L1	5471	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
51862	chr12	53479971	53480130	+	0	NA	3' UTR (NM_001128912, exon 15 of 15)	3' UTR (NM_001128912, exon 15 of 15)	15582	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
25030	chr10	3740021	3740750	+	0	NA	intron (NR_131187, intron 1 of 1)	intron (NR_131187, intron 1 of 1)	44824	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
58725	chr12	132586451	132587080	+	0	NA	Intergenic	Intergenic	4768	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
165696	chr3	101988671	101988930	+	0	NA	intron (NR_026934, intron 2 of 3)	intron (NR_026934, intron 2 of 3)	47941	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
23636	chr1	230495921	230496180	+	0	NA	Intergenic	LTR45C|LTR|ERV1	-69718	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
17547	chr1	156798621	156799130	+	0	NA	intron (NM_005973, intron 6 of 6)	Tigger2|DNA|TcMar-Tigger	-16875	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
32538	chr10	103189621	103189880	+	0	NA	intron (NM_001351175, intron 1 of 19)	AluSx3|SINE|Alu	3522	NM_001134373	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
9923	chr1	54469451	54469750	+	0	NA	Intergenic	THE1A|LTR|ERVL-MaLR	-63206	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
195322	chr6	36606751	36606850	+	0	NA	Intergenic	AluSz|SINE|Alu	12438	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
237248	chrX	110160351	110160800	+	0	NA	intron (NM_001353849, intron 5 of 7)	Charlie4a|DNA|hAT-Charlie	64485	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
198165	chr6	95489201	95489600	+	0	NA	Intergenic	L2c|LINE|L2	88051	NR_047502	101927288		NR_047502	ENSG00000261366	MANEA-DT	MANEA-AS1	MANEA divergent transcript	ncRNA
167386	chr3	128845251	128846580	+	0	NA	promoter-TSS (NR_162138)	promoter-TSS (NR_162138)	-893	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
206171	chr7	28078301	28078800	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-101907	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
90290	chr17	1031651	1032030	+	0	NA	promoter-TSS (NM_001256847).2	promoter-TSS (NM_001256847).2	-9	NM_001256847	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
133111	chr2	112648821	112649400	+	0	NA	intron (NM_005415, intron 4 of 10)	intron (NM_005415, intron 4 of 10)	3171	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
98942	chr17	48632821	48633080	+	0	NA	promoter-TSS (NR_029582)	promoter-TSS (NR_029582)	-391	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
75338	chr15	65386571	65386730	+	0	NA	exon (NM_020962, exon 17 of 20)	exon (NM_020962, exon 17 of 20)	-8648	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
229433	chr9	121366771	121367130	+	0	NA	intron (NR_073037, intron 1 of 7)	AluJr|SINE|Alu	3300	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
174669	chr4	41692951	41693050	+	0	NA	intron (NM_001330674, intron 20 of 20)	intron (NM_001330674, intron 20 of 20)	55725	NM_003924	8929		NM_003924	ENSG00000109132	PHOX2B	CCHS|NBLST2|NBPhox|PMX2B	paired like homeobox 2B	protein-coding
222205	chr8	133054371	133054730	+	0	NA	promoter-TSS (NR_146773)	promoter-TSS (NR_146773)	-409	NR_146773	100302522		NR_146773	ENSG00000287736	PTCSC1	NCRNA00197|PTCSC	papillary thyroid carcinoma susceptibility candidate 1	ncRNA
82510	chr16	17467821	17468950	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	2575	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
177616	chr4	121155071	121155250	+	0	NA	intron (NM_001128843, intron 7 of 12)	AluSx3|SINE|Alu	9161	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
162639	chr3	48813751	48813850	+	0	NA	intron (NM_004157, intron 1 of 10)	intron (NM_004157, intron 1 of 10)	34074	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
83685	chr16	28417851	28418600	+	0	NA	intron (NM_001199142, intron 1 of 21)	AluSz|SINE|Alu	8229	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
156548	chr22	41435151	41435250	+	0	NA	3' UTR (NM_016272, exon 2 of 2)	3' UTR (NM_016272, exon 2 of 2)	11601	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
1124	chr1	2130801	2131380	+	0	NA	intron (NM_001033582, intron 1 of 14)	intron (NM_001033582, intron 1 of 14)	26374	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
52043	chr12	54010951	54011050	+	0	NA	intron (NM_022658, intron 1 of 1)	intron (NM_022658, intron 1 of 1)	2015	NM_022658	3224		NM_022658	ENSG00000037965	HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
215575	chr7	158826701	158826900	+	0	NA	intron (NM_020728, intron 1 of 21)	AluSc|SINE|Alu	2709	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
188942	chr5	160474051	160474380	+	0	NA	promoter-TSS (NR_036095)	promoter-TSS (NR_036095)	-187	NR_036095	100422938		NR_036095		MIR3142	-	microRNA 3142	ncRNA
190860	chr6	2028601	2028800	+	0	NA	intron (NM_001253846, intron 4 of 10)	intron (NM_001253846, intron 4 of 10)	147291	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
151770	chr22	17999901	18000800	+	0	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-19389	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
141771	chr2	242032921	242033400	+	0	NA	intron (NR_110220, intron 3 of 3)	intron (NR_110220, intron 3 of 3)	31951	NR_149023	285097		NM_178530	ENSG00000280119	LOC285097	-	uncharacterized FLJ38379	ncRNA
174580	chr4	40241701	40242650	+	0	NA	intron (NM_001278364, intron 3 of 4)	intron (NM_001278364, intron 3 of 4)	45144	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
165940	chr3	107578051	107578550	+	0	NA	intron (NM_020235, intron 2 of 16)	intron (NM_020235, intron 2 of 16)	55338	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
76041	chr15	72229321	72229800	+	0	NA	5' UTR (NM_001206799, exon 1 of 11)	5' UTR (NM_001206799, exon 1 of 11)	351	NM_001206799	5315		NM_002654	ENSG00000067225	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1|p58	pyruvate kinase M1/2	protein-coding
93632	chr17	19170171	19170330	+	0	NA	Intergenic	AluSx|SINE|Alu	-7626	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
181243	chr5	39201171	39201700	+	0	NA	intron (NM_199335, intron 2 of 17)	MER20|DNA|hAT-Charlie	18128	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
155257	chr22	37993051	37993150	+	0	NA	intron (NM_001301130, intron 5 of 5)	intron (NM_001301130, intron 5 of 5)	4306	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
192730	chr6	26369121	26369650	+	0	NA	intron (NM_001197249, intron 3 of 9)	MER90|LTR|ERV1	1207	NM_001197246	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
28946	chr10	63220751	63221050	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluY|SINE|Alu	48323	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
166095	chr3	109804601	109805650	+	0	NA	Intergenic	Intergenic	202297	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
181327	chr5	40385901	40386850	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-293540	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
64859	chr14	35289951	35290380	+	0	NA	intron (NM_001282234, intron 1 of 6)	L2a|LINE|L2	-2152	NR_104110	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
96929	chr17	42159371	42159850	+	0	NA	intron (NM_012285, intron 16 of 16)	intron (NM_012285, intron 16 of 16)	-4621	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
57240	chr12	121555251	121555550	+	0	NA	intron (NM_001005366, intron 4 of 22)	AluSz6|SINE|Alu	24846	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
189278	chr5	172085901	172086100	+	0	NA	intron (NM_005990, intron 10 of 18)	MIRb|SINE|MIR	-79362	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
70343	chr14	101852021	101852900	+	0	NA	intron (NM_001352916, intron 2 of 13)	AluSx1|SINE|Alu	42597	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
142324	chr20	3671521	3671830	+	0	NA	exon (NM_001282447, exon 16 of 22)	exon (NM_001282447, exon 16 of 22)	-8276	NM_145762	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
220209	chr8	96159521	96159950	+	0	NA	intron (NM_001001557, intron 1 of 1)	CpG	1071	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
37459	chr11	18265971	18266130	+	0	NA	promoter-TSS (NM_000331)	promoter-TSS (NM_000331)	-175	NM_000331	6288		NM_000331	ENSG00000173432	SAA1	PIG4|SAA|SAA2|TP53I4	serum amyloid A1	protein-coding
160635	chr3	31547301	31548000	+	0	NA	intron (NM_178862, intron 1 of 15)	AluSz|SINE|Alu	14725	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
48433	chr12	9690151	9690250	+	0	NA	intron (NR_036693, intron 3 of 3)	L1M4|LINE|L1	20487	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
68846	chr14	91291251	91291350	+	0	NA	intron (NM_001080414, intron 23 of 29)	intron (NM_001080414, intron 23 of 29)	-37420	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
103615	chr17	78731251	78731350	+	0	NA	intron (NM_017456, intron 1 of 12)	MIR3|SINE|MIR	5602	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
236675	chrX	76460971	76461130	+	0	NA	Intergenic	L1M2|LINE|L1	33340	NM_020932	57692		NM_020932	ENSG00000198934	MAGEE1	DAMAGE|HCA1	MAGE family member E1	protein-coding
177134	chr4	108112771	108113830	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	53497	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
24959	chr10	1939071	1939750	+	0	NA	Intergenic	Intergenic	74938	NR_040253	282980		NR_040253		LINC00700	-	long intergenic non-protein coding RNA 700	ncRNA
31877	chr10	100224151	100224250	+	0	NA	intron (NM_001278, intron 2 of 20)	MLT1F1|LTR|ERVL-MaLR	5396	NM_001278	1147		NM_001278	ENSG00000213341	CHUK	BPS2|IKBKA|IKK-1|IKK-alpha|IKK1|IKKA|NFKBIKA|TCF16	component of inhibitor of nuclear factor kappa B kinase complex	protein-coding
198504	chr6	106508301	106508700	+	0	NA	intron (NM_001371242, intron 2 of 21)	L1ME1|LINE|L1	-3355	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
86367	chr16	66552111	66553980	+	0	NA	intron (NM_001202509, intron 1 of 2)	FRAM|SINE|Alu	469	NM_016951	51192		NM_016326	ENSG00000217555	CKLF	C32|CKLF1|CKLF2|CKLF3|CKLF4|HSPC224|UCK-1	chemokine like factor	protein-coding
159964	chr3	17664901	17665100	+	0	NA	intron (NM_001134381, intron 1 of 23)	U7|snRNA|snRNA	35020	NM_001134381	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
186748	chr5	139309921	139310200	+	0	NA	intron (NM_199189, intron 5 of 17)	intron (NM_199189, intron 5 of 17)	16310	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
209345	chr7	76259901	76260950	+	0	NA	intron (NM_001291831, intron 5 of 15)	CpG-26059	-42248	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
188024	chr5	149618651	149619030	+	0	NA	intron (NM_001001669, intron 6 of 12)	intron (NM_001001669, intron 6 of 12)	37342	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
232128	chr9	133992001	133993630	+	0	NA	promoter-TSS (NM_003371)	promoter-TSS (NM_003371)	-491	NM_003371	7410		NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
10901	chr1	83145701	83146000	+	0	NA	intron (NR_147074, intron 9 of 10)	L2a|LINE|L2	-159642	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
209870	chr7	90455301	90455700	+	0	NA	Intergenic	Intergenic	-14139	NM_001365443	102723899		NM_001365443	ENSG00000251154	PTTG1IP2	-	PTTG1IP family member 2	protein-coding
144544	chr20	35724671	35724830	+	0	NA	intron (NM_184234, intron 7 of 16)	intron (NM_184234, intron 7 of 16)	17510	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
181570	chr5	43190171	43190530	+	0	NA	Intergenic	L1MEd|LINE|L1	-1875	NM_153361	167359		NM_153361	ENSG00000177453	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
65511	chr14	51897751	51898250	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	20571	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
10372	chr1	64956801	64957980	+	0	NA	intron (NM_001321853, intron 2 of 26)	L2|LINE|L2	9159	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
187158	chr5	140559321	140559780	+	0	NA	intron (NM_133173, intron 11 of 11)	L2b|LINE|L2	-1457	NR_045586	10011		NM_001035235	ENSG00000213523	SRA1	SRA|SRAP|STRAA1|pp7684	steroid receptor RNA activator 1	protein-coding
61519	chr13	57631551	57632480	+	0	NA	5' UTR (NM_001040429, exon 1 of 4)	5' UTR (NM_001040429, exon 1 of 4)	271	NM_001040429	27253		NM_014459	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
103488	chr17	78364751	78365480	+	0	NA	TTS (NR_110845)	TTS (NR_110845)	4113	NR_110846	101928674		NR_110845	ENSG00000266970	SOCS3-DT	-	SOCS3 divergent transcript	ncRNA
217657	chr8	30085301	30085500	+	0	NA	Intergenic	L2a|LINE|L2	-2192	NM_001284239	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
124831	chr2	7728621	7729150	+	0	NA	Intergenic	Intergenic	170770	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
50204	chr12	46195371	46195800	+	0	NA	TTS (NM_001278390)	TTS (NM_001278390)	70931	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
125390	chr2	11456051	11456550	+	0	NA	intron (NM_001278276, intron 2 of 7)	intron (NM_001278276, intron 2 of 7)	9861	NM_001278276	1876		NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
124516	chr2	47521	47780	+	0	NA	Intergenic	Intergenic	-1145	NM_001077710	642273		NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
162701	chr3	48992751	48993450	+	0	NA	intron (NM_177939, intron 2 of 8)	AluSp|SINE|Alu	2859	NM_177939	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
58917	chr13	19737001	19737200	+	0	NA	intron (NM_001354909, intron 5 of 8)	7SLRNA|srpRNA|srpRNA	45845	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
165668	chr3	101859301	101859700	+	0	NA	3' UTR (NM_001005474, exon 13 of 13)	3' UTR (NM_001005474, exon 13 of 13)	9986	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
156989	chr22	42503401	42503850	+	0	NA	intron (NR_027786, intron 6 of 10)	intron (NR_027786, intron 6 of 10)	3046	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
226818	chr9	77457871	77458630	+	0	NA	intron (NR_121184, intron 2 of 4)	intron (NR_121184, intron 2 of 4)	10601	NR_121184	101927422		NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
127569	chr2	42567121	42567380	+	0	NA	promoter-TSS (NM_001282756)	promoter-TSS (NM_001282756)	-795	NM_001282756	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
22691	chr1	223843871	223844300	+	0	NA	intron (NM_001031685, intron 1 of 17)	MIRb|SINE|MIR	1862	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
20059	chr1	185570771	185571130	+	0	NA	intron (NR_110793, intron 2 of 3)	intron (NR_110793, intron 2 of 3)	57538	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
5849	chr1	26721601	26722350	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	25960	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
217907	chr8	37896851	37897230	+	0	NA	intron (NM_025151, intron 1 of 4)	intron (NM_025151, intron 1 of 4)	2457	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
14001	chr1	120684001	120684930	+	0	NA	Intergenic	Intergenic	-19029	NR_144517	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
130550	chr2	85697101	85697630	+	0	NA	intron (NM_006433, intron 3 of 4)	intron (NM_006433, intron 3 of 4)	3007	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
86678	chr16	67507121	67507980	+	0	NA	Intergenic	HAL1|LINE|L1	21195	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
59479	chr13	26254801	26255330	+	0	NA	intron (NM_001260, intron 1 of 12)	intron (NM_001260, intron 1 of 12)	936	NM_001318368	1024		NM_001260	ENSG00000132964	CDK8	IDDHBA|K35	cyclin dependent kinase 8	protein-coding
19064	chr1	169896071	169896600	+	0	NA	Intergenic	MER54A|LTR|ERVL	-2376	NM_181093	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
107028	chr18	32100101	32100550	+	0	NA	intron (NM_198128, intron 1 of 4)	AluJb|SINE|Alu	7719	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
233785	chrX	1436771	1437550	+	0	NA	intron (NM_001173474, intron 2 of 11).2	MLT1B|LTR|ERVL-MaLR	15749	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
235076	chrX	40173451	40173550	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	3777	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
53799	chr12	69242471	69242630	+	0	NA	intron (NM_001300947, intron 1 of 10)	intron (NM_001300947, intron 1 of 10)	2981	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
231153	chr9	129873521	129874550	+	0	NA	intron (NM_001110303, intron 17 of 25)	intron (NM_001110303, intron 17 of 25)	4430	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
89656	chr16	89354801	89355430	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	34663	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
227186	chr9	87926321	87926580	+	0	NA	intron (NR_149022, intron 3 of 3)	MSTA|LTR|ERVL-MaLR	8488	NM_001145124	441452		NM_001145124	ENSG00000230246	SPATA31C1	FAM75C1|SPATA31C2	SPATA31 subfamily C member 1	protein-coding
219459	chr8	73156671	73157230	+	0	NA	Intergenic	AluYc|SINE|Alu	-63778	NM_153225	157869		NM_153225	ENSG00000164764	SBSPON	C8orf84|RPESP	somatomedin B and thrombospondin type 1 domain containing	protein-coding
108154	chr18	62585851	62586450	+	0	NA	non-coding (NR_126534, exon 15 of 15)	non-coding (NR_126534, exon 15 of 15)	63125	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
153338	chr22	24401251	24401750	+	0	NA	intron (NM_001254732, intron 13 of 14)	intron (NM_001254732, intron 13 of 14)	-22097	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
112102	chr19	5578001	5579200	+	0	NA	Intergenic	(TCTGTC)n|Simple_repeat|Simple_repeat	-10566	NR_027064								
127680	chr2	43194371	43195540	+	0	NA	Intergenic	Intergenic	31651	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
15416	chr1	150256851	150257300	+	0	NA	promoter-TSS (NM_012113)	promoter-TSS (NM_012113)	-699	NM_012113	23632		NM_012113	ENSG00000118298	CA14	CAXiV	carbonic anhydrase 14	protein-coding
122769	chr19	50143001	50143280	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-2820	NR_024243	100170227		NR_024243		SNAR-D	-	small NF90 (ILF3) associated RNA D	snRNA
167501	chr3	129185301	129186030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1769	NM_001127194	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
199888	chr6	127830671	127830830	+	0	NA	intron (NM_001010923, intron 2 of 5).2	L1MB3|LINE|L1	24438	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
114057	chr19	11048651	11050300	+	0	NA	intron (NR_164683, intron 31 of 35)	intron (NR_164683, intron 31 of 35)	-39988	NM_001195799	3949		NM_000527	ENSG00000130164	LDLR	FH|FHC|FHCL1|LDLCQ2	low density lipoprotein receptor	protein-coding
158997	chr3	10333401	10333800	+	0	NA	intron (NM_001330611, intron 20 of 21)	intron (NM_001330611, intron 20 of 21)	3371	NR_036084	100422933		NR_036084	ENSG00000264534	MIR378B	-	microRNA 378b	ncRNA
118917	chr19	38729471	38730130	+	0	NA	TTS (NM_144691)	TTS (NM_144691)	14674	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
19998	chr1	185257021	185257550	+	0	NA	intron (NM_017673, intron 16 of 18)	L1PA2|LINE|L1	59958	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
97018	chr17	42302251	42302550	+	0	NA	intron (NM_001288719, intron 8 of 17)	intron (NM_001288719, intron 8 of 17)	14344	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
124337	chr19	58280251	58280350	+	0	NA	non-coding (NR_144447, exon 1 of 7)	non-coding (NR_144447, exon 1 of 7)	1334	NR_144447	108903150		NR_144447	ENSG00000267216	ZNF8-ERVK3-1	-	ZNF8-ERVK3-1 readthrough (NMD candidate)	ncRNA
221950	chr8	129936751	129937050	+	0	NA	intron (NM_001353279, intron 2 of 13)	AluY|SINE|Alu	2911	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
63546	chr14	20280321	20280580	+	0	NA	Intergenic	L1PA4|LINE|L1	25501	NM_138376	91875		NM_138376	ENSG00000136319	TTC5	NEDCAFD|Strap	tetratricopeptide repeat domain 5	protein-coding
67744	chr14	73641071	73641730	+	0	NA	Intergenic	AluSz|SINE|Alu	-3586	NM_031427	83544		NM_031427	ENSG00000119661	DNAL1	C14orf168|CILD16|LC1	dynein axonemal light chain 1	protein-coding
172809	chr4	3037071	3037730	+	0	NA	exon (NM_005307, exon 13 of 14)	exon (NM_005307, exon 13 of 14)	37114	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
192398	chr6	24802521	24802980	+	0	NA	Intergenic	AluJr|SINE|Alu	-3833	NM_001282492	101928603		NM_001282492	ENSG00000260286	ARMH2	C6orf229	armadillo like helical domain containing 2	protein-coding
87839	chr16	75649301	75650830	+	0	NA	intron (NR_144545, intron 1 of 2)	intron (NR_144545, intron 1 of 2)	2292	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
111987	chr19	4910901	4912700	+	0	NA	intron (NM_013282, intron 1 of 15)	intron (NM_013282, intron 1 of 15)	1433	NM_013282	29128		NM_013282	ENSG00000276043	UHRF1	ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95	ubiquitin like with PHD and ring finger domains 1	protein-coding
204628	chr7	5389371	5389680	+	0	NA	intron (NM_001080495, intron 4 of 29)	AluSx|SINE|Alu	34021	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
40603	chr11	64641501	64641700	+	0	NA	intron (NM_015080, intron 17 of 22)	intron (NM_015080, intron 17 of 22)	1945	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
55225	chr12	101823071	101823230	+	0	NA	intron (NM_024312, intron 1 of 20)	intron (NM_024312, intron 1 of 20)	7809	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
120839	chr19	45510721	45511550	+	0	NA	intron (NM_003370, intron 1 of 12)	intron (NM_003370, intron 1 of 12)	3656	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
213633	chr7	139645721	139646380	+	0	NA	intron (NM_022740, intron 2 of 14)	intron (NM_022740, intron 2 of 14)	122365	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
135024	chr2	156254521	156255080	+	0	NA	non-coding (NR_110249, exon 1 of 4)	non-coding (NR_110249, exon 1 of 4)	131	NR_110250	101929378		NR_110249	ENSG00000226383	LINC01876	uc.83	long intergenic non-protein coding RNA 1876	ncRNA
121106	chr19	45929371	45929530	+	0	NA	Intergenic	(GACAGAGG)n|Simple_repeat|Simple_repeat	-14672	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
35667	chr11	1870701	1871410	+	0	NA	5' UTR (NM_001013254, exon 1 of 11)	5' UTR (NM_001013254, exon 1 of 11)	131	NM_001013255	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
224080	chr9	4300701	4300900	+	0	NA	promoter-TSS (NM_001042413)	promoter-TSS (NM_001042413)	-732	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
221600	chr8	125512121	125512450	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	80076	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
175407	chr4	70846971	70847130	+	0	NA	Intergenic	AluY|SINE|Alu	-7160	NM_002092	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
35378	chr11	1303371	1303980	+	0	NA	promoter-TSS (NM_001318514)	promoter-TSS (NM_001318514)	-885	NM_001318514	54472		NM_019009	ENSG00000078902	TOLLIP	IL-1RAcPIP	toll interacting protein	protein-coding
146832	chr20	51410001	51410310	+	0	NA	intron (NM_012340, intron 9 of 10)	AluY|SINE|Alu	42822	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
183590	chr5	80188001	80188200	+	0	NA	intron (NM_001174072, intron 2 of 11)	AluSg4|SINE|Alu	67948	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
81975	chr16	11878421	11878680	+	0	NA	intron (NM_001130007, intron 11 of 14)	AluJo|SINE|Alu	-27008	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
7990	chr1	37946721	37947600	+	0	NA	promoter-TSS (NR_158628)	promoter-TSS (NR_158628)	-103	NR_158629	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
105229	chr17	82372301	82372830	+	0	NA	intron (NM_001381897, intron 1 of 1)	intron (NM_001381897, intron 1 of 1)	800	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
4501	chr1	21666521	21666780	+	0	NA	intron (NM_001145657, intron 1 of 26)	intron (NM_001145657, intron 1 of 26)	2707	NM_001350526	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
235227	chrX	41375151	41375530	+	0	NA	Intergenic	AluSx|SINE|Alu	41174	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
194184	chr6	32122871	32123030	+	0	NA	intron (NM_001136153, intron 5 of 17).4	AluSz6|SINE|Alu	5296	NM_004381	1388		NM_004381	ENSG00000213676	ATF6B	ATF6beta|CREB-RP|CREBL1|G13	activating transcription factor 6 beta	protein-coding
13441	chr1	114347701	114347900	+	0	NA	Intergenic	Intergenic	163403	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
235343	chrX	44244001	44244280	+	0	NA	intron (NM_025184, intron 7 of 14)	intron (NM_025184, intron 7 of 14)	99532	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
168206	chr3	141235571	141235930	+	0	NA	intron (NM_152282, intron 3 of 7)	intron (NM_152282, intron 3 of 7)	3925	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
58652	chr12	132520701	132520900	+	0	NA	intron (NM_001382740, intron 2 of 11)	intron (NM_001382740, intron 2 of 11)	15394	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
160552	chr3	30682471	30682630	+	0	NA	intron (NM_001024847, intron 6 of 7)	intron (NM_001024847, intron 6 of 7)	75949	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
72578	chr15	34610501	34610700	+	0	NA	Intergenic	Intergenic	-26949	NM_001023567	440270		NM_001023567	ENSG00000215252	GOLGA8B	GOLGA5	golgin A8 family member B	protein-coding
59600	chr13	27628021	27628280	+	0	NA	intron (NM_152705, intron 1 of 2)	intron (NM_152705, intron 1 of 2)	6258	NM_015972	51082		NM_015972	ENSG00000186184	POLR1D	AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2	RNA polymerase I and III subunit D	protein-coding
224201	chr9	5459451	5459750	+	0	NA	intron (NR_052005, intron 3 of 7)	intron (NR_052005, intron 3 of 7)	9058	NM_001314029	29126		NM_014143	ENSG00000120217	CD274	B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1|hPD-L1	CD274 molecule	protein-coding
86169	chr16	57799201	57800700	+	0	NA	intron (NM_001318710, intron 1 of 19)	intron (NM_001318710, intron 1 of 19)	-1926	NM_001318715	3801		NM_005550	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
214254	chr7	148921321	148921750	+	0	NA	Intergenic	Intergenic	-19953	NR_001571	6090		NR_001571		RNY5	Y5|hY5	RNA, Ro60-associated Y5	ncRNA
213734	chr7	140388021	140388350	+	0	NA	intron (NM_032295, intron 1 of 11)	AluJb|SINE|Alu	10345	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
74842	chr15	63511701	63512130	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	7322	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
38196	chr11	36382321	36382880	+	0	NA	intron (NM_024841, intron 2 of 9)	intron (NM_024841, intron 2 of 9)	6615	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
152158	chr22	20022451	20022550	+	0	NA	intron (NM_001322172, intron 1 of 7)	intron (NM_001322172, intron 1 of 7)	1390	NM_152906	128989		NM_152906	ENSG00000183597	TANGO2	C22orf25|MECRCN	transport and golgi organization 2 homolog	protein-coding
235049	chrX	40106101	40106780	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG-29594	-8482	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
105047	chr17	82064201	82064730	+	0	NA	intron (NM_022156, intron 2 of 13)	intron (NM_022156, intron 2 of 13)	1339	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
153461	chr22	25397801	25398000	+	0	NA	intron (NM_001135772, intron 1 of 6)	FLAM_C|SINE|Alu	7508	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
44969	chr11	116852851	116852950	+	0	NA	intron (NM_001281748, intron 21 of 24)	intron (NM_001281748, intron 21 of 24)	-14950	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
27174	chr10	28541001	28541450	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	8107	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
93415	chr17	18389701	18389900	+	0	NA	TTS (NM_001145127).2	TTS (NM_001145127).2	12022	NM_001145127	645027		NM_001145127	ENSG00000214860	EVPLL	-	envoplakin like	protein-coding
143791	chr20	32453021	32453280	+	0	NA	intron (NM_080616, intron 5 of 7)	MIRb|SINE|MIR	30340	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
8836	chr1	43147651	43147980	+	0	NA	promoter-TSS (NM_001101376)	promoter-TSS (NM_001101376)	-89	NM_001101376	440585		NM_001101376	ENSG00000186973	CFAP144	FAM183A	cilia and flagella associated protein 144	protein-coding
99694	chr17	50835571	50836330	+	0	NA	exon (NM_175575, exon 1 of 2)	exon (NM_175575, exon 1 of 2)	364	NM_175575	124857		NM_175575	ENSG00000173714	WFIKKN2	GASP-1|WFDC20B|WFIKKNRP|hGASP-1	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding
123002	chr19	50960651	50960750	+	0	NA	intron (NM_001012964, intron 5 of 5)	AluSx3|SINE|Alu	-7662	NM_012427	25818		NM_012427	ENSG00000167754	KLK5	KLK-L2|KLKL2|SCTE	kallikrein related peptidase 5	protein-coding
71014	chr14	104756421	104756680	+	0	NA	intron (NM_006427, intron 2 of 3)	intron (NM_006427, intron 2 of 3)	3403	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
125738	chr2	20665021	20665280	+	0	NA	Intergenic	Intergenic	-1994	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
181821	chr5	52787411	52788550	+	0	NA	promoter-TSS (NM_015946)	promoter-TSS (NM_015946)	64	NM_015946	53918		NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota mRNA surveillance and ribosome rescue factor	protein-coding
197530	chr6	77465771	77466650	+	0	NA	Intergenic	Intergenic	-2719	NM_000863	3351		NM_000863	ENSG00000135312	HTR1B	5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine receptor 1B	protein-coding
153790	chr22	29598521	29598780	+	0	NA	Intergenic	AluJb|SINE|Alu	-4906	NM_016418	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
113710	chr19	10434501	10435150	+	0	NA	intron (NM_001111309, intron 1 of 14)	AluSx1|SINE|Alu	2390	NM_001111309	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
178100	chr4	140556521	140557000	+	0	NA	Intergenic	Intergenic	12201	NM_021833	7350		NM_021833	ENSG00000109424	UCP1	SLC25A7|UCP	uncoupling protein 1	protein-coding
235192	chrX	41340701	41341530	+	0	NA	intron (NM_001356, intron 3 of 16)	AluSp|SINE|Alu	6949	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
60700	chr13	43908501	43908930	+	0	NA	Intergenic	Intergenic	28811	NM_001350647	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
170661	chr3	187367251	187367350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1085	NM_022147	64108		NM_022147	ENSG00000136514	RTP4	IFRG28|Z3CXXC4	receptor transporter protein 4	protein-coding
38358	chr11	44599271	44599630	+	0	NA	intron (NM_002231, intron 3 of 9)	intron (NM_002231, intron 3 of 9)	33787	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
4068	chr1	19066771	19067730	+	0	NA	Intergenic	Intergenic	-110574	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
143460	chr20	30813401	30814480	+	0	NA	Intergenic	CpG	-410478	NR_045115	140678		NR_045115		MLLT10P1	MLLT10L|bA348I14.3	MLLT10 pseudogene 1	pseudo
14873	chr1	146457801	146458200	+	0	NA	Intergenic	AluSx|SINE|Alu	-28332	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
55672	chr12	107388971	107389330	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	68562	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
209521	chr7	77006271	77006630	+	0	NA	intron (NR_023383, intron 6 of 10)	intron (NR_023383, intron 6 of 10)	25628	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
119020	chr19	38910371	38910930	+	0	NA	exon (NM_001243212, exon 4 of 5)	exon (NM_001243212, exon 4 of 5)	1508	NM_001243212	643669		NM_001243212	ENSG00000262484	CCER2	-	coiled-coil glutamate rich protein 2	protein-coding
120765	chr19	45427201	45428400	+	0	NA	intron (NM_001369412, intron 1 of 9)	intron (NM_001369412, intron 1 of 9)	-3883	NM_001369408	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
212426	chr7	128320001	128321160	+	0	NA	intron (NM_018077, intron 14 of 18)	intron (NM_018077, intron 14 of 18)	23328	NM_001166135	55131		NM_018077	ENSG00000106344	RBM28	ANES|NOP4	RNA binding motif protein 28	protein-coding
39740	chr11	61816101	61817680	+	0	NA	exon (NM_013402, exon 1 of 12)	exon (NM_013402, exon 1 of 12)	113	NM_013402	3992		NM_013402	ENSG00000149485	FADS1	D5D|FADS6|FADSD5|LLCDL1|TU12	fatty acid desaturase 1	protein-coding
79983	chr16	1795101	1795300	+	0	NA	promoter-TSS (NR_027389)	promoter-TSS (NR_027389)	-292	NR_027389	3483		NM_004970	ENSG00000099769	IGFALS	ACLSD|ALS	insulin like growth factor binding protein acid labile subunit	protein-coding
223909	chr9	460951	461050	+	0	NA	intron (NM_203447, intron 46 of 47)	intron (NM_203447, intron 46 of 47)	-9291	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
786	chr1	1536751	1537130	+	0	NA	intron (NM_001114748, intron 2 of 3)	L2|LINE|L2	3684	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
40069	chr11	62759671	62759830	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1830	NM_002696	5436		NM_002696	ENSG00000168002	POLR2G	RPB19|RPB7|hRPB19|hsRPB7	RNA polymerase II subunit G	protein-coding
56497	chr12	116266351	116266450	+	0	NA	intron (NM_015335, intron 1 of 30)	intron (NM_015335, intron 1 of 30)	11293	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
151123	chr21	44888751	44889330	+	0	NA	intron (NM_001127491, intron 13 of 15)	intron (NM_001127491, intron 13 of 15)	-15137	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
170805	chr3	189147821	189148350	+	0	NA	Intergenic	Intergenic	-23886	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
177962	chr4	139020251	139020600	+	0	NA	intron (NM_012118, intron 1 of 2)	intron (NM_012118, intron 1 of 2)	4644	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
135942	chr2	171937801	171938000	+	0	NA	intron (NR_027862, intron 2 of 9)	AluJr|SINE|Alu	15439	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
5691	chr1	26363571	26364980	+	0	NA	intron (NM_173574, intron 4 of 5)	MIR3|SINE|MIR	8475	NM_001114759	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
41536	chr11	66283921	66284330	+	0	NA	TTS (NR_073078)	TTS (NR_073078)	5018	NM_001300861	10897		NM_020470	ENSG00000174851	YIF1A	54TM|FinGER7|YIF1|YIF1P	Yip1 interacting factor homolog A, membrane trafficking protein	protein-coding
71837	chr15	22207501	22207700	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	17729	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
159132	chr3	12644051	12644350	+	0	NA	intron (NM_001354691, intron 1 of 16)	intron (NM_001354691, intron 1 of 16)	19308	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
207936	chr7	50794451	50794550	+	0	NA	Intergenic	MIRb|SINE|MIR	-1047	NM_001371008	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
223659	chr8	144370251	144370930	+	0	NA	intron (NR_134307, intron 1 of 1)	AluSx3|SINE|Alu	2281	NR_134307	101928902		NR_134307		LOC101928902	-	uncharacterized LOC101928902	ncRNA
110853	chr19	2597721	2598330	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-32690	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
192366	chr6	24699151	24699450	+	0	NA	intron (NM_018473, intron 2 of 2)	AluY|SINE|Alu	19854	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
205244	chr7	8044521	8044980	+	0	NA	intron (NM_138426, intron 3 of 7)	intron (NM_138426, intron 3 of 7)	75954	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
42132	chr11	67632171	67632330	+	0	NA	intron (NM_005995, intron 7 of 7)	intron (NM_005995, intron 7 of 7)	-2313	NM_001243750	254552		NM_181843	ENSG00000167799	NUDT8	-	nudix hydrolase 8	protein-coding
122835	chr19	50428871	50429650	+	0	NA	3' UTR (NM_001243999, exon 6 of 6)	3' UTR (NM_001243999, exon 6 of 6)	-3632	NM_004533	4606		NM_004533	ENSG00000086967	MYBPC2	MYBPC|MYBPCF|fsMyBP-C	myosin binding protein C2	protein-coding
76610	chr15	75441501	75441900	+	0	NA	intron (NM_001145357, intron 1 of 20)	Looper|DNA|PiggyBac	9990	NM_015477	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
113567	chr19	10256301	10256500	+	0	NA	intron (NM_146387, intron 5 of 9)	AluSz6|SINE|Alu	4186	NM_015956	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
16802	chr1	155556351	155557050	+	0	NA	intron (NM_018489, intron 1 of 27)	AluSc8|SINE|Alu	-5342	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
217878	chr8	37857201	37857600	+	0	NA	Intergenic	Intergenic	-7539	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
164705	chr3	67685501	67686250	+	0	NA	intron (NR_109992, intron 3 of 6)	intron (NR_109992, intron 3 of 6)	31178	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
21797	chr1	207054501	207054850	+	0	NA	intron (NM_001018053, intron 1 of 14)	intron (NM_001018053, intron 1 of 14)	1400	NM_001018053	5208		NM_006212	ENSG00000123836	PFKFB2	PFK-2/FBPase-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding
105796	chr18	2909971	2910500	+	0	NA	intron (NM_032048, intron 7 of 7)	intron (NM_032048, intron 7 of 7)	36388	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
88721	chr16	85985951	85986350	+	0	NA	Intergenic	AluSz|SINE|Alu	67803	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
216672	chr8	22148671	22148830	+	0	NA	exon (NM_139278, exon 8 of 8)	exon (NM_139278, exon 8 of 8)	-6843	NM_001316965	80346		NM_025232	ENSG00000168476	REEP4	C8orf20|PP432|Yip2c	receptor accessory protein 4	protein-coding
179141	chr4	169574051	169574150	+	0	NA	intron (NR_164631, intron 10 of 14)	AluJb|SINE|Alu	38483	NM_001199400	4750		NM_012224	ENSG00000137601	NEK1	ALS24|NY-REN-55|OFD2|SRPS2|SRPS2A|SRTD6	NIMA related kinase 1	protein-coding
96275	chr17	39869501	39870100	+	0	NA	intron (NM_199321, intron 2 of 7)	AluSx1|SINE|Alu	1598	NM_198844	124626		NM_198844	ENSG00000186075	ZPBP2	ZPBPL	zona pellucida binding protein 2	protein-coding
127148	chr2	37822871	37823030	+	0	NA	Intergenic	Intergenic	6761	NR_110011	101929559		NR_110011	ENSG00000237803	PIRAT1	LINC00211|NCRNA00211|PIRAT	PU.1 (SPI1) induced regulator of S100A8 and S100A9 alarmin transcription 1	ncRNA
87542	chr16	71910401	71910600	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluYm1|SINE|Alu	14969	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
111239	chr19	3517951	3518450	+	0	NA	intron (NM_016263, intron 1 of 13)	AluSx|SINE|Alu	-4756	NM_001136197	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
36905	chr11	10789501	10789800	+	0	NA	Intergenic	AluSx1|SINE|Alu	11958	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
97326	chr17	43259021	43259530	+	0	NA	Intergenic	AluSp|SINE|Alu	-7256	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
126758	chr2	30241621	30241880	+	0	NA	intron (NM_030915, intron 2 of 2)	AluSq2|SINE|Alu	10216	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
223211	chr8	143588651	143589550	+	0	NA	exon (NM_001130053, exon 3 of 10).2	exon (NM_001130053, exon 3 of 10).2	8313	NM_001130057	1936		NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
17666	chr1	157667651	157667750	+	0	NA	Intergenic	AluYe5|SINE|Alu	33069	NR_135217	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
13340	chr1	113806771	113807280	+	0	NA	intron (NM_018364, intron 1 of 6)	AluJb|SINE|Alu	5451	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
183170	chr5	75335171	75335630	+	0	NA	Intergenic	Intergenic	-1768	NM_001364187	3156		NM_000859	ENSG00000113161	HMGCR	LDLCQ3|LGMDR28|MYPLG	3-hydroxy-3-methylglutaryl-CoA reductase	protein-coding
41404	chr11	66020271	66020630	+	0	NA	intron (NM_053054, intron 7 of 11)	intron (NM_053054, intron 7 of 11)	6029	NM_053054	117144		NM_053054	ENSG00000175294	CATSPER1	CATSPER|SPGF7	cation channel sperm associated 1	protein-coding
185306	chr5	126744871	126745030	+	0	NA	Intergenic	L1MC4|LINE|L1	31536	NR_134485	102723557		NR_134485	ENSG00000251072	LMNB1-DT	-	LMNB1 divergent transcript	ncRNA
52212	chr12	54377921	54378330	+	0	NA	intron (NM_001290002, intron 3 of 8)	(GGAGTGG)n|Simple_repeat|Simple_repeat	6608	NM_001290001	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
207005	chr7	38353221	38353900	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	11983	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
87054	chr16	68319301	68319530	+	0	NA	intron (NR_165373, intron 3 of 17)	intron (NR_165373, intron 3 of 17)	8301	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
149869	chr21	35442171	35442330	+	0	NA	intron (NR_073512, intron 2 of 2)	MER5A|DNA|hAT-Charlie	138514	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
71966	chr15	24955801	24957030	+	0	NA	5' UTR (NM_001378257, exon 1 of 9)	5' UTR (NM_001378257, exon 1 of 9)	115	NM_001378257	6638		NM_003097	ENSG00000128739	SNRPN	HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N	small nuclear ribonucleoprotein polypeptide N	protein-coding
94656	chr17	30237371	30238130	+	0	NA	Intergenic	Intergenic	-2053	NM_001045	6532		NM_001045	ENSG00000108576	SLC6A4	5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT	solute carrier family 6 member 4	protein-coding
146884	chr20	51508771	51508930	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	33869	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
234369	chrX	15750851	15753430	+	0	NA	intron (NR_160544, intron 5 of 11)	MER4D|LTR|ERV1	13870	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
191915	chr6	15440821	15441590	+	0	NA	intron (NM_001267040, intron 3 of 17)	intron (NM_001267040, intron 3 of 17)	192350	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
104367	chr17	81002401	81003000	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	10859	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
88883	chr16	87713101	87714350	+	0	NA	intron (NM_001351937, intron 8 of 11)	intron (NM_001351937, intron 8 of 11)	52261	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
203446	chr7	371151	371600	+	0	NA	Intergenic	Intergenic	-8050	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
74539	chr15	60507801	60508930	+	0	NA	intron (NM_134260, intron 6 of 11)	MIR3|SINE|MIR	29187	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
49129	chr12	14902471	14902630	+	0	NA	Intergenic	MIRb|SINE|MIR	-16696	NM_001190839	4256		NM_000900	ENSG00000111341	MGP	GIG36|MGLAP|NTI	matrix Gla protein	protein-coding
237316	chrX	118350201	118351100	+	0	NA	intron (NM_001184966, intron 1 of 17)	intron (NM_001184966, intron 1 of 17)	4544	NM_001184965	54521		NM_019045	ENSG00000131725	WDR44	RAB11BP|RPH11|SYM-4	WD repeat domain 44	protein-coding
102739	chr17	76245871	76247030	+	0	NA	Intergenic	Intergenic	-5957	NM_052916	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
53681	chr12	68454551	68454650	+	0	NA	Intergenic	Intergenic	-3116	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
27322	chr10	30522771	30523830	+	0	NA	Intergenic	AluSx|SINE|Alu	88654	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
232737	chr9	136632191	136633230	+	0	NA	Intergenic	CpG	-15529	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
194132	chr6	31970521	31970950	+	0	NA	promoter-TSS (NR_026717).4	promoter-TSS (NR_026717).4	-440	NR_026717	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
233553	chrX	269821	270100	+	0	NA	Intergenic	Intergenic	-6396	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228353	chr9	99041051	99041580	+	0	NA	intron (NM_001855, intron 23 of 41)	intron (NM_001855, intron 23 of 41)	-63798	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
6777	chr1	30756001	30757200	+	0	NA	intron (NM_006762, intron 1 of 7)	MIR|SINE|MIR	1174	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
132105	chr2	101362401	101362850	+	0	NA	intron (NM_153836, intron 2 of 3)	intron (NM_153836, intron 2 of 3)	24878	NM_153836	200407		NM_153836	ENSG00000175874	CREG2	-	cellular repressor of E1A stimulated genes 2	protein-coding
143873	chr20	32559971	32560350	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	25173	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
192854	chr6	27176521	27177500	+	0	NA	Intergenic	Intergenic	29384	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
198985	chr6	110900501	110901200	+	0	NA	Intergenic	Intergenic	26066	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
213782	chr7	140722801	140723480	+	0	NA	3' UTR (NM_001378467, exon 19 of 19)	3' UTR (NM_001378467, exon 19 of 19)	-26063	NR_024454	100134713		NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
24652	chr1	246927901	246928330	+	0	NA	intron (NR_136586, intron 1 of 36)	AluY|SINE|Alu	3243	NM_015446	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
74768	chr15	63243071	63243430	+	0	NA	intron (NM_016530, intron 1 of 7)	MER1A|DNA|hAT-Charlie	-34300	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
117889	chr19	32693201	32694580	+	0	NA	intron (NM_001105570, intron 1 of 2)	HERV9-int|LTR|ERV1	1929	NM_001105570	390916		NM_001105570	ENSG00000213965	NUDT19	RP2	nudix hydrolase 19	protein-coding
227998	chr9	95507401	95508000	+	0	NA	promoter-TSS (NM_001083607)	promoter-TSS (NM_001083607)	-273	NM_001083606	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
144926	chr20	36990351	36990650	+	0	NA	Intergenic	LTR7C|LTR|ERV1	-38792	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
22789	chr1	224432421	224433100	+	0	NA	intron (NM_001115113, intron 1 of 13)	intron (NM_001115113, intron 1 of 13)	-1880	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
42606	chr11	72102421	72103980	+	0	NA	promoter-TSS (NM_017907)	promoter-TSS (NM_017907)	97	NM_017907	55004		NM_017907	ENSG00000149357	LAMTOR1	C11orf59|PDRO|Ragulator1|p18|p27RF-Rho	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding
75483	chr15	66285651	66285750	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-7609	NM_133375	115752		NM_133375	ENSG00000166938	DIS3L	DIS3L1	DIS3 like exosome 3'-5' exoribonuclease	protein-coding
230867	chr9	129171121	129171580	+	0	NA	Intergenic	Intergenic	6911	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
100869	chr17	64318901	64319450	+	0	NA	TTS (NM_000442)	TTS (NM_000442)	-55915	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
218033	chr8	38784671	38785480	+	0	NA	intron (NM_001352804, intron 1 of 10)	intron (NM_001352804, intron 1 of 10)	-2161	NM_001352779	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
123381	chr19	53907951	53908730	+	0	NA	promoter-TSS (NM_001384801)	promoter-TSS (NM_001384801)	-938	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
138581	chr2	207768071	207768740	+	0	NA	exon (NM_003468, exon 2 of 2)	exon (NM_003468, exon 2 of 2)	1501	NM_003468	7855		NM_003468	ENSG00000163251	FZD5	C2orf31|HFZ5|MCOPCB11	frizzled class receptor 5	protein-coding
80377	chr16	2534751	2535250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2995	NR_036139	100422974		NR_036139	ENSG00000266232	MIR3178	mir-3178	microRNA 3178	ncRNA
122228	chr19	48988521	48988930	+	0	NA	intron (NR_027763, intron 1 of 14)	AluJb|SINE|Alu	4584	NR_027763	2997		NM_002103	ENSG00000104812	GYS1	GSY|GYS	glycogen synthase 1	protein-coding
93939	chr17	21315351	21315830	+	0	NA	TTS (NM_002756)	TTS (NM_002756)	27554	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
163715	chr3	52290271	52290730	+	0	NA	promoter-TSS (NR_046719)	promoter-TSS (NR_046719)	-767	NR_046719	100874110		NR_046719		GLYCTK-AS1	-	GLYCTK antisense RNA 1	ncRNA
176840	chr4	102579801	102580000	+	0	NA	intron (NM_001382625, intron 9 of 24)	intron (NM_001382625, intron 9 of 24)	-77414	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
15105	chr1	148595421	148596230	+	0	NA	promoter-TSS (NM_015383)	promoter-TSS (NM_015383)	-108	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
96622	chr17	40563121	40563900	+	0	NA	intron (NM_001838, intron 1 of 2)	intron (NM_001838, intron 1 of 2)	1962	NM_001838	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
100735	chr17	63911271	63912500	+	0	NA	promoter-TSS (NM_022581)	promoter-TSS (NM_022581)	-627	NM_022579	1444		NM_001318	ENSG00000204414	CSHL1	CS-5|CSHP1|CSL|GHB4|hCS-L	chorionic somatomammotropin hormone like 1	protein-coding
176375	chr4	88594351	88594980	+	0	NA	intron (NM_001375479, intron 1 of 25)	AluSx3|SINE|Alu	2185	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
235465	chrX	46578001	46578630	+	0	NA	intron (NM_019886, intron 1 of 1)	AluSc8|SINE|Alu	4550	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
169025	chr3	152468371	152468530	+	0	NA	Intergenic	Intergenic	-127460	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
234063	chrX	7170971	7171150	+	0	NA	intron (NM_001320751, intron 2 of 11)	intron (NM_001320751, intron 2 of 11)	-22907	NM_001135565	8226		NM_012080	ENSG00000130021	PUDP	DXF68S1E|FAM16AX|GS1|HDHD1|HDHD1A	pseudouridine 5'-phosphatase	protein-coding
156169	chr22	40215021	40215500	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	37335	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
33511	chr10	119178001	119179480	+	0	NA	promoter-TSS (NM_006793)	promoter-TSS (NM_006793)	72	NR_126106	10935		NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PPPCD|PRO1748|SCAR32|SP-22|prx-III	peroxiredoxin 3	protein-coding
130109	chr2	74528021	74528330	+	0	NA	intron (NR_126510, intron 6 of 11)	intron (NR_126510, intron 6 of 11)	-1230	NR_135770	27429		NM_013247	ENSG00000115317	HTRA2	MGCA8|OMI|PARK13|PRSS25	HtrA serine peptidase 2	protein-coding
52724	chr12	56601351	56602380	+	0	NA	exon (NM_013449, exon 20 of 29)	exon (NM_013449, exon 20 of 29)	28461	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
200107	chr6	130197471	130197630	+	0	NA	intron (NM_001258275, intron 7 of 13)	HERVH-int|LTR|ERV1	18335	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
218339	chr8	42891551	42892350	+	0	NA	intron (NM_030954, intron 1 of 6)	intron (NM_030954, intron 1 of 6)	4325	NR_039679	100616115		NR_039679	ENSG00000284062	MIR4469	mir-4469	microRNA 4469	ncRNA
40505	chr11	64268971	64270500	+	0	NA	promoter-TSS (NM_001378078)	promoter-TSS (NM_001378078)	-796	NM_001378076	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
131511	chr2	96548401	96548880	+	0	NA	intron (NM_001319096, intron 2 of 5)	intron (NM_001319096, intron 2 of 5)	10761	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
16362	chr1	154339771	154339950	+	0	NA	intron (NM_001367934, intron 11 of 26)	intron (NM_001367934, intron 11 of 26)	11062	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
93288	chr17	18138371	18138730	+	0	NA	intron (NM_016239, intron 16 of 64)	L2c|LINE|L2	-20989	NR_164159	105371566		NR_164159		LOC105371566	-	uncharacterized LOC105371566	ncRNA
227966	chr9	94984951	94985050	+	0	NA	intron (NM_001193329, intron 10 of 15)	intron (NM_001193329, intron 10 of 15)	-39446	NR_147614	101928119		NR_147613		LOC101928119	-	uncharacterized LOC101928119	ncRNA
168153	chr3	139116571	139116730	+	0	NA	intron (NR_026783, intron 2 of 2)	Tigger3b|DNA|TcMar-Tigger	12465	NR_026783	60467		NM_021812	ENSG00000232416	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis candidate 1	ncRNA
102865	chr17	76504071	76504430	+	0	NA	Intergenic	Intergenic	-2823	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
15498	chr1	150452171	150452530	+	0	NA	intron (NM_015203, intron 7 of 10)	MLT1C|LTR|ERVL-MaLR	-35069	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
147638	chr20	62165251	62165550	+	0	NA	intron (NM_001301778, intron 8 of 11)	CpG	-17628	NR_169205	26164		NM_015666	ENSG00000101181	MTG2	GTPBP5|ObgH1|dJ1005F21.2	mitochondrial ribosome associated GTPase 2	protein-coding
131836	chr2	98661871	98662300	+	0	NA	intron (NM_001160154, intron 2 of 12)	L1MC4a|LINE|L1	1388	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
67393	chr14	69787451	69787550	+	0	NA	intron (NM_003049, intron 1 of 4)	intron (NM_003049, intron 1 of 4)	9741	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
228059	chr9	96057051	96057400	+	0	NA	Intergenic	Intergenic	-8614	NR_033838	158435		NM_138497		LOC158435	-	uncharacterized LOC158435	ncRNA
224919	chr9	32572901	32573880	+	0	NA	promoter-TSS (NM_002493)	promoter-TSS (NM_002493)	-206	NM_001199987	4712		NM_002493	ENSG00000165264	NDUFB6	B17|CI	NADH:ubiquinone oxidoreductase subunit B6	protein-coding
154888	chr22	37151451	37151750	+	0	NA	intron (NM_001346222, intron 1 of 9)	L1MA3|LINE|L1	-1684	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
8880	chr1	43647871	43648030	+	0	NA	Intergenic	AluSq|SINE|Alu	-2199	NM_014663	9682		NM_014663	ENSG00000066135	KDM4A	JHDM3A|JMJD2|JMJD2A|TDRD14A	lysine demethylase 4A	protein-coding
92247	chr17	7924401	7924600	+	0	NA	exon (NM_004732, exon 9 of 14)	exon (NM_004732, exon 9 of 14)	4935	NM_004732	9196		NM_004732	ENSG00000170049	KCNAB3	AKR6A9|KCNA3.1B|KCNA3B|KV-BETA-3	potassium voltage-gated channel subfamily A regulatory beta subunit 3	protein-coding
230438	chr9	128157901	128158100	+	0	NA	Intergenic	AluSc|SINE|Alu	-2265	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
145852	chr20	45890701	45891930	+	0	NA	promoter-TSS (NM_000308)	promoter-TSS (NM_000308)	-20	NM_000308	5476		NM_000308	ENSG00000064601	CTSA	GLB2|GSL|NGBE|PPCA|PPGB	cathepsin A	protein-coding
131497	chr2	96531951	96533830	+	0	NA	promoter-TSS (NR_135564)	promoter-TSS (NR_135564)	-584	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
105768	chr18	2790521	2790780	+	0	NA	intron (NM_015295, intron 45 of 47)	AluSx|SINE|Alu	-56356	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
201499	chr6	149032601	149033580	+	0	NA	promoter-TSS (NR_134599)	promoter-TSS (NR_134599)	-429	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
235572	chrX	47458571	47458950	+	0	NA	intron (NM_001324149, intron 1 of 3)	AluJb|SINE|Alu	8909	NM_001324156	7592		NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
102601	chr17	75907251	75907630	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-2556	NM_032478	64978		NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3|mL38	mitochondrial ribosomal protein L38	protein-coding
48388	chr12	9615271	9616430	+	0	NA	Intergenic	Intergenic	-1434	NR_046450	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
128602	chr2	60973971	60974130	+	0	NA	intron (NM_001322127, intron 4 of 16)	MER52D|LTR|ERV1	43162	NM_001322124	150962		NM_144709	ENSG00000162927	PUS10	CCDC139|DOBI|Hup10	pseudouridine synthase 10	protein-coding
3065	chr1	12173101	12174330	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	6724	NM_001066	7133		NM_001066	ENSG00000028137	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	TNF receptor superfamily member 1B	protein-coding
76884	chr15	77983601	77984000	+	0	NA	Intergenic	Intergenic	10425	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
121253	chr19	46677771	46678900	+	0	NA	TTS (NR_040042)	TTS (NR_040042)	16857	NR_040041	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
132564	chr2	106466471	106466780	+	0	NA	intron (NM_001144013, intron 1 of 22)	CpG	1788	NM_001144013	653489		NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2 like and GRIP domain containing 3	protein-coding
137286	chr2	195535801	195537330	+	0	NA	Intergenic	Intergenic	-120393	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
149735	chr21	34373771	34374130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1530	NM_001313692	102723553		NM_001313692	ENSG00000273590	LOC102723553	SMIM11B	small integral membrane protein 11B	protein-coding
98649	chr17	47823521	47823850	+	0	NA	non-coding (NR_037575, exon 5 of 5)	non-coding (NR_037575, exon 5 of 5)	-1891	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
166478	chr3	114276171	114276330	+	0	NA	Intergenic	L1MC5a|LINE|L1	-17778	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
26626	chr10	22433901	22434300	+	0	NA	Intergenic	MARNA|DNA|TcMar-Mariner	3829	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
114700	chr19	13137271	13137630	+	0	NA	intron (NM_052876, intron 4 of 5)	intron (NM_052876, intron 4 of 5)	12925	NM_003765	8677		NM_003765	ENSG00000104915	STX10	SYN10|hsyn10	syntaxin 10	protein-coding
8423	chr1	40475851	40476280	+	0	NA	Intergenic	L1MEg|LINE|L1	-1225	NM_001320179	339559		NM_198494	ENSG00000187815	ZFP69	ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
159184	chr3	12836351	12836450	+	0	NA	intron (NM_001007073, intron 3 of 3)	intron (NM_001007073, intron 3 of 3)	4050	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
11754	chr1	92311901	92312780	+	0	NA	intron (NM_024813, intron 6 of 12)	AluJr4|SINE|Alu	13281	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
124012	chr19	55467571	55468600	+	0	NA	Intergenic	Intergenic	-6443	NM_024710	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
2714	chr1	10651971	10652430	+	0	NA	intron (NM_017766, intron 11 of 15)	intron (NM_017766, intron 11 of 15)	144446	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
128952	chr2	64613071	64613230	+	0	NA	intron (NR_034023, intron 2 of 3)	intron (NR_034023, intron 2 of 3)	5838	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
102951	chr17	76685071	76685230	+	0	NA	exon (NM_198530, exon 3 of 4)	exon (NM_198530, exon 3 of 4)	3513	NM_001363769	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
49097	chr12	14618901	14619100	+	0	NA	intron (NM_004963, intron 24 of 26)	intron (NM_004963, intron 24 of 26)	-51117	NM_024829	79887		NM_024829	ENSG00000121316	PLBD1	-	phospholipase B domain containing 1	protein-coding
80668	chr16	3019521	3020500	+	0	NA	promoter-TSS (NM_016639)	promoter-TSS (NM_016639)	-358	NM_016639	51330		NM_016639	ENSG00000006327	TNFRSF12A	CD266|FN14|TWEAKR	TNF receptor superfamily member 12A	protein-coding
48512	chr12	9925721	9926050	+	0	NA	intron (NM_207375, intron 2 of 4)	LOR1a|LTR|ERV1	6485	NM_001130711	387836		NM_207375	ENSG00000188393	CLEC2A	INPE5792|KACL|PILAR|UNQ5792	C-type lectin domain family 2 member A	protein-coding
7540	chr1	34885101	34886280	+	0	NA	exon (NM_001080418, exon 7 of 12)	exon (NM_001080418, exon 7 of 12)	-25941	NM_001320261	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
175744	chr4	77734921	77735500	+	0	NA	intron (NM_144571, intron 8 of 11)	LTR16A|LTR|ERVL	83854	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
137764	chr2	198321871	198322230	+	0	NA	intron (NR_110267, intron 2 of 2)	intron (NR_110267, intron 2 of 2)	53047	NR_110267	101927619		NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
185581	chr5	131390501	131390700	+	0	NA	intron (NM_001038702, intron 3 of 4)	AluSz|SINE|Alu	126547	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
38811	chr11	47290621	47291080	+	0	NA	intron (NR_164838, intron 18 of 30)	intron (NR_164838, intron 18 of 30)	-18740	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
231206	chr9	129946601	129947600	+	0	NA	intron (NM_001363755, intron 6 of 15)	intron (NM_001363755, intron 6 of 15)	77495	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
194964	chr6	35310001	35310680	+	0	NA	intron (NM_022047, intron 2 of 10)	intron (NM_022047, intron 2 of 10)	12522	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
64817	chr14	35042551	35042850	+	0	NA	Intergenic	AluJb|SINE|Alu	-2207	NM_001079519	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
50046	chr12	44501421	44501880	+	0	NA	Intergenic	LTR12C|LTR|ERV1	374011	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
63667	chr14	21054301	21054500	+	0	NA	intron (NM_001282211, intron 1 of 14)	intron (NM_001282211, intron 1 of 14)	-3422	NM_138331	122665		NM_138331	ENSG00000173431	RNASE8	RAE2	ribonuclease A family member 8	protein-coding
27092	chr10	27369871	27370030	+	0	NA	Intergenic	AluJr4|SINE|Alu	44418	NM_001034842	374308		NM_001034842	ENSG00000182077	PTCHD3	PTR	patched domain containing 3 (gene/pseudogene)	protein-coding
51748	chr12	53258871	53259230	+	0	NA	Intergenic	Intergenic	6955	NM_032889	84975		NM_032889	ENSG00000182544	MFSD5	SLC61A1|hsMOT2	major facilitator superfamily domain containing 5	protein-coding
198492	chr6	106334271	106334430	+	0	NA	Intergenic	AluY|SINE|Alu	-8530	NM_001286107	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
60934	chr13	46303771	46304500	+	0	NA	Intergenic	L1MA5A|LINE|L1	-6291	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
227612	chr9	92759371	92760000	+	0	NA	intron (NM_001003800, intron 1 of 6)	intron (NM_001003800, intron 1 of 6)	5148	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
72346	chr15	31334621	31335080	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	8015	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
210713	chr7	100593451	100593750	+	0	NA	intron (NR_038910, intron 6 of 8)	AluSc|SINE|Alu	3987	NM_012172	26261		NM_012172	ENSG00000106336	FBXO24	FBX24	F-box protein 24	protein-coding
215195	chr7	155787171	155787850	+	0	NA	Intergenic	CpG	21653	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
34579	chr10	133238521	133238780	+	0	NA	intron (NM_014468, intron 1 of 2)	intron (NM_014468, intron 1 of 2)	795	NM_014468	27287		NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
11274	chr1	89119301	89119500	+	0	NA	intron (NM_004120, intron 4 of 10)	L2a|LINE|L2	6714	NM_004120	2634		NM_004120	ENSG00000162645	GBP2	-	guanylate binding protein 2	protein-coding
24725	chr1	247548271	247548430	+	0	NA	promoter-TSS (NM_145278)	promoter-TSS (NM_145278)	-784	NM_145278	148823		NM_145278	ENSG00000169224	GCSAML	C1orf150	germinal center associated signaling and motility like	protein-coding
26448	chr10	17430601	17431050	+	0	NA	intron (NR_144322, intron 2 of 6)	L1PB3|LINE|L1	23770	NM_001345961	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
81229	chr16	4537701	4539180	+	0	NA	promoter-TSS (NM_001199054)	promoter-TSS (NM_001199054)	-11	NM_001199054	29965		NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
136419	chr2	176188701	176189730	+	0	NA	promoter-TSS (NR_110466)	promoter-TSS (NR_110466)	-257	NR_033979	401022		NR_033979	ENSG00000224189	HAGLR	HOXD-AS1|MIR7704HG|Mdgt|STEEL	HOXD antisense growth-associated long non-coding RNA	ncRNA
35546	chr11	1605621	1606450	+	0	NA	Intergenic	Intergenic	2428	NM_001012708	387266		NM_001012708	ENSG00000196224	KRTAP5-3	KRTAP5-9|KRTAP5.3	keratin associated protein 5-3	protein-coding
85221	chr16	47544301	47544780	+	0	NA	intron (NM_001031835, intron 7 of 31)	L1PA6|LINE|L1	83209	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
206417	chr7	32506451	32506780	+	0	NA	intron (NM_015060, intron 1 of 15)	MER44B|DNA|TcMar-Tigger	11126	NM_015060	23080		NM_015060	ENSG00000105778	AVL9	KIAA0241	AVL9 cell migration associated	protein-coding
38118	chr11	35237271	35237430	+	0	NA	Intergenic	Intergenic	74400	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
133477	chr2	119868021	119868430	+	0	NA	intron (NM_002830, intron 3 of 26)	L1ME2|LINE|L1	108303	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
203479	chr7	521551	521880	+	0	NA	non-coding (NR_033963, exon 1 of 3)	non-coding (NR_033963, exon 1 of 3)	1324	NR_033963	441307		NR_033963	ENSG00000223855	PDGFA-DT	HRAT92	PDGFA divergent transcript	ncRNA
153523	chr22	26554151	26554530	+	0	NA	TTS (NR_031615)	TTS (NR_031615)	983	NR_031615	100313914		NR_031615	ENSG00000221760	MIR548J	MIRN548J|hsa-mir-548j	microRNA 548j	ncRNA
115945	chr19	16663251	16663950	+	0	NA	intron (NM_024074, intron 1 of 5)	AluY|SINE|Alu	2461	NM_024074	79041		NM_024074	ENSG00000072954	TMEM38A	TRIC-A|TRICA	transmembrane protein 38A	protein-coding
30492	chr10	79284951	79285700	+	0	NA	intron (NM_020338, intron 8 of 24)	intron (NM_020338, intron 8 of 24)	-62144	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
19916	chr1	184379421	184379680	+	0	NA	Intergenic	Intergenic	-7479	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
8350	chr1	40230571	40230930	+	0	NA	intron (NM_012421, intron 6 of 7)	intron (NM_012421, intron 6 of 7)	-17187	NM_001008740	127391		NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
134101	chr2	132256971	132257130	+	0	NA	promoter-TSS (NR_031608)	promoter-TSS (NR_031608)	30	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B|mir-663b	microRNA 663b	ncRNA
45524	chr11	118736651	118737150	+	0	NA	Intergenic	AluSx|SINE|Alu	54048	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
51302	chr12	51252321	51252730	+	0	NA	intron (NM_001031628, intron 2 of 3)	AluSx|SINE|Alu	13699	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
123887	chr19	55311951	55312250	+	0	NA	TTS (NM_001085488)	TTS (NM_001085488)	13241	NM_001085488	284417		NM_001085488	ENSG00000180061	TMEM150B	DRAM3|TMEM224|TTN2	transmembrane protein 150B	protein-coding
116090	chr19	17264401	17265730	+	0	NA	promoter-TSS (NM_001321417)	promoter-TSS (NM_001321417)	-320	NM_001321417	83878		NM_031941	ENSG00000130307	USHBP1	AIEBP|MCC2	USH1 protein network component harmonin binding protein 1	protein-coding
156010	chr22	39940721	39941280	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	-5817	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
220911	chr8	106725771	106726230	+	0	NA	promoter-TSS (NM_001198535)	promoter-TSS (NM_001198535)	-107	NM_001198534	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
84694	chr16	30784171	30784580	+	0	NA	intron (NM_001345970, intron 2 of 2)	intron (NM_001345970, intron 2 of 2)	2830	NM_001080417	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
206591	chr7	35724821	35726480	+	0	NA	Intergenic	Intergenic	9213	NR_108082	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
137663	chr2	197434591	197436750	+	0	NA	promoter-TSS (NM_001308824)	promoter-TSS (NM_001308824)	-577	NM_001005526	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
175643	chr4	76420821	76421430	+	0	NA	Intergenic	CpG	-13820	NM_001042784	339965		NM_178555	ENSG00000163749	CCDC158	-	coiled-coil domain containing 158	protein-coding
97096	chr17	42439151	42439680	+	0	NA	Intergenic	AluSz|SINE|Alu	-16159	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
55979	chr12	110125671	110125830	+	0	NA	intron (NR_144949, intron 1 of 18)	intron (NR_144949, intron 1 of 18)	1393	NR_144951	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
88130	chr16	81615201	81615400	+	0	NA	intron (NM_030629, intron 2 of 20)	(TG)n|Simple_repeat|Simple_repeat	3952	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
51971	chr12	53939151	53939680	+	0	NA	exon (NM_017410, exon 1 of 2)	exon (NM_017410, exon 1 of 2)	228	NR_047507	100874366		NR_047507	ENSG00000249641	HOXC13-AS	HOXC-AS5	HOXC13 antisense RNA	ncRNA
25687	chr10	8602971	8603130	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-8659	NR_134492	105376398		NR_134492		LOC105376398	-	uncharacterized LOC105376398	ncRNA
54946	chr12	96234771	96235530	+	0	NA	intron (NM_005230, intron 2 of 4)	intron (NM_005230, intron 2 of 4)	-20348	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
160056	chr3	18527801	18528080	+	0	NA	intron (NR_125803, intron 6 of 6)	intron (NR_125803, intron 6 of 6)	-82348	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
111167	chr19	3343621	3344980	+	0	NA	Intergenic	Intergenic	-15330	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
196641	chr6	44287571	44287730	+	0	NA	exon (NM_182539, exon 2 of 5)	exon (NM_182539, exon 2 of 5)	10048	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
64034	chr14	22523451	22523630	+	0	NA	Intergenic	Intergenic	33522	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
189319	chr5	172148871	172149030	+	0	NA	intron (NM_005990, intron 2 of 18)	AluSz|SINE|Alu	39274	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
171426	chr3	196246871	196247430	+	0	NA	intron (NM_005017, intron 6 of 9)	MIRc|SINE|MIR	30616	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
125127	chr2	9838151	9838450	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-5142	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
213850	chr7	142057301	142057500	+	0	NA	intron (NM_004668, intron 30 of 47)	(GTG)n|Simple_repeat|Simple_repeat	-54318	NM_001293626	93432		NM_001008748	ENSG00000257743	MGAM2	-	maltase-glucoamylase 2 (putative)	protein-coding
63378	chr13	114055551	114055650	+	0	NA	intron (NM_001320822, intron 2 of 23).2	intron (NM_001320822, intron 2 of 23).2	22355	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
195220	chr6	36138251	36138850	+	0	NA	intron (NM_002754, intron 9 of 11)	intron (NM_002754, intron 9 of 11)	8037	NM_002754	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
209463	chr7	76486301	76487330	+	0	NA	intron (NM_001102595, intron 3 of 9)	intron (NM_001102595, intron 3 of 9)	6305	NM_001102596	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
146011	chr20	46682401	46682600	+	0	NA	intron (NM_001193340, intron 1 of 12)	intron (NM_001193340, intron 1 of 12)	1985	NM_001193340	64849		NM_022829	ENSG00000158296	SLC13A3	ARLIAK|NADC3|NaC3|SDCT2	solute carrier family 13 member 3	protein-coding
210614	chr7	100439971	100440130	+	0	NA	Intergenic	AluSp|SINE|Alu	-3553	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
10124	chr1	59298421	59298930	+	0	NA	intron (NM_018291, intron 1 of 15)	intron (NM_018291, intron 1 of 15)	1581	NM_018291	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
80179	chr16	2123271	2123830	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-9569	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
44662	chr11	110433151	110433250	+	0	NA	intron (NM_004109, intron 1 of 3)	intron (NM_004109, intron 1 of 3)	3252	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
43812	chr11	86592721	86593290	+	0	NA	intron (NR_147828, intron 2 of 14)	MIRb|SINE|MIR	79193	NR_147831	10873		NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
125292	chr2	10522251	10522750	+	0	NA	Intergenic	Intergenic	72772	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
107539	chr18	48545751	48545930	+	0	NA	intron (NM_001142397, intron 2 of 12)	intron (NM_001142397, intron 2 of 12)	6809	NM_001142397	9811		NM_014772	ENSG00000134030	CTIF	Gm672|KIAA0427	cap binding complex dependent translation initiation factor	protein-coding
237537	chrX	120419271	120419830	+	0	NA	Intergenic	Intergenic	49746	NM_002294	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
104861	chr17	81850071	81850230	+	0	NA	intron (NM_000918, intron 4 of 10)	AluSp|SINE|Alu	10385	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
190473	chr5	180113751	180114250	+	0	NA	intron (NM_175062, intron 11 of 13)	intron (NM_175062, intron 11 of 13)	-42241	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
177182	chr4	108162501	108162700	+	0	NA	intron (NM_016269, intron 3 of 11)	MamSINE1|SINE|tRNA-RTE	4197	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
141893	chr20	839951	840250	+	0	NA	intron (NM_001289145, intron 2 of 2)	intron (NM_001289145, intron 2 of 2)	-1175	NM_001289147	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
7152	chr1	32226071	32227200	+	0	NA	intron (NM_003757, intron 7 of 11)	AluSx|SINE|Alu	-4264	NR_133636	56063		NM_019118	ENSG00000160055	TMEM234	AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7	transmembrane protein 234	protein-coding
123506	chr19	54209671	54210200	+	0	NA	Intergenic	Intergenic	9077	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
138306	chr2	203733771	203734130	+	0	NA	intron (NM_001243078, intron 2 of 2)	(TCAT)n|Simple_repeat|Simple_repeat	27311	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
210136	chr7	98215921	98216580	+	0	NA	TTS (NM_177455)	TTS (NM_177455)	4811	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
183723	chr5	81014451	81014550	+	0	NA	intron (NM_006909, intron 1 of 26)	THE1B|LTR|ERVL-MaLR	-53593	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
230361	chr9	128063471	128063650	+	0	NA	exon (NM_197956, exon 2 of 2)	exon (NM_197956, exon 2 of 2)	3760	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
110630	chr19	2221451	2222700	+	0	NA	exon (NM_032482, exon 24 of 28)	exon (NM_032482, exon 24 of 28)	12074	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
58959	chr13	19831371	19831930	+	0	NA	intron (NM_001142684, intron 7 of 7)	AluSx|SINE|Alu	31986	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
23102	chr1	226672871	226673230	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	2018	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
189013	chr5	168578971	168580380	+	0	NA	promoter-TSS (NM_024594)	promoter-TSS (NM_024594)	-307	NM_024594	79646		NM_024594	ENSG00000120137	PANK3	-	pantothenate kinase 3	protein-coding
31608	chr10	97368751	97368950	+	0	NA	intron (NM_015179, intron 25 of 33)	intron (NM_015179, intron 25 of 33)	32490	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
6725	chr1	30190121	30190380	+	0	NA	Intergenic	Intergenic	-152638	NR_110790	101929406		NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
211809	chr7	107896121	107896580	+	0	NA	intron (NM_001289750, intron 2 of 11)	MIRb|SINE|MIR	5167	NM_000108	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
20017	chr1	185301171	185301730	+	0	NA	exon (NM_006469, exon 9 of 15)	exon (NM_006469, exon 9 of 15)	15793	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
49327	chr12	21684071	21684250	+	0	NA	Intergenic	Intergenic	-26305	NM_001315537	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
62220	chr13	98509251	98510150	+	0	NA	intron (NM_003576, intron 2 of 10)	MER54B|LTR|ERVL	12425	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
20834	chr1	201512751	201513370	+	0	NA	intron (NR_160747, intron 1 of 1)	L2c|LINE|L2	5847	NR_160748	107985246		NR_160746	ENSG00000224536	CSRP1-AS1	-	CSRP1 antisense RNA 1	ncRNA
104955	chr17	81959101	81960280	+	0	NA	exon (NM_178493, exon 2 of 11)	exon (NM_178493, exon 2 of 11)	1497	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
108015	chr18	58757271	58757430	+	0	NA	Intergenic	MER77|LTR|ERVL	-56530	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
66385	chr14	61490071	61490230	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	80044	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
46079	chr11	122814421	122814700	+	0	NA	TTS (NM_001363365)	TTS (NM_001363365)	-23940	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
86807	chr16	67840301	67840700	+	0	NA	intron (NM_025082, intron 1 of 15)	L1PA14|LINE|L1	-1820	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
83583	chr16	28150671	28151030	+	0	NA	intron (NM_001270940, intron 9 of 24)	intron (NM_001270940, intron 9 of 24)	61115	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
96755	chr17	41703851	41704700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8056	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
181190	chr5	39141371	39141530	+	0	NA	intron (NM_199335, intron 3 of 17)	intron (NM_199335, intron 3 of 17)	-67051	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
61557	chr13	62512421	62512680	+	0	NA	Intergenic	L1PA16|LINE|L1	188893	NR_047038	100874180		NR_047038	ENSG00000229307	LINC00459	-	long intergenic non-protein coding RNA 459	ncRNA
145780	chr20	45370051	45370150	+	0	NA	TTS (NM_001197129)	TTS (NM_001197129)	6931	NR_003189	767557		NR_003189	ENSG00000254806	SYS1-DBNDD2	C20orf169-DBNDD2	SYS1-DBNDD2 readthrough (NMD candidate)	ncRNA
70794	chr14	103532971	103533750	+	0	NA	intron (NM_152307, intron 3 of 3)	intron (NM_152307, intron 3 of 3)	4164	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
73209	chr15	41561571	41562180	+	0	NA	intron (NM_006293, intron 3 of 18)	intron (NM_006293, intron 3 of 18)	1903	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
186067	chr5	134085701	134085900	+	0	NA	Intergenic	AluJr|SINE|Alu	-28881	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
3799	chr1	16718101	16718300	+	0	NA	intron (NR_026567, intron 1 of 10)	intron (NR_026567, intron 1 of 10)	1957	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
104605	chr17	81411121	81411930	+	0	NA	intron (NM_001377448, intron 2 of 27)	(CCTT)n|Simple_repeat|Simple_repeat	-10747	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
155781	chr22	39252471	39253000	+	0	NA	Intergenic	MIRc|SINE|MIR	-7753	NM_002608	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
47489	chr12	3962371	3963400	+	0	NA	Intergenic	Intergenic	-89437	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
178559	chr4	151110421	151110880	+	0	NA	Intergenic	AluSz|SINE|Alu	6823	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
37417	chr11	17280651	17280750	+	0	NA	intron (NM_001352672, intron 1 of 14)	intron (NM_001352672, intron 1 of 14)	3730	NM_001352672	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
101085	chr17	64925601	64925800	+	0	NA	Intergenic	AluSx3|SINE|Alu	-6209	NM_001303255	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
156237	chr22	40387871	40388430	+	0	NA	TTS (NM_001363840)	TTS (NM_001363840)	17556	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
183624	chr5	80225651	80226350	+	0	NA	intron (NM_001174072, intron 1 of 11)	MIRb|SINE|MIR	30048	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
2449	chr1	9633551	9633650	+	0	NA	Intergenic	AluSq2|SINE|Alu	-18131	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
77227	chr15	81265521	81267100	+	0	NA	intron (NM_172217, intron 4 of 18)	MIRb|SINE|MIR	-30660	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
67023	chr14	67532171	67532330	+	0	NA	intron (NM_001348546, intron 1 of 2)	intron (NM_001348546, intron 1 of 2)	-1040	NM_020715	57475		NM_020715	ENSG00000054690	PLEKHH1	-	pleckstrin homology, MyTH4 and FERM domain containing H1	protein-coding
24917	chr10	1062921	1063730	+	0	NA	intron (NM_014023, intron 1 of 13)	L1MDa|LINE|L1	-6621	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
128420	chr2	55281851	55284100	+	0	NA	non-coding (NR_027258, exon 1 of 1)	non-coding (NR_027258, exon 1 of 1)	656	NR_027258	344405		NM_001080459	ENSG00000293422	PRORSD1P	NCRNA00117|PRDXDD1P|Prdxdd1|ProX|ProXp-ala|Ybakd1	prolyl-tRNA synthetase associated domain containing 1, pseudogene	pseudo
93106	chr17	17680371	17680530	+	0	NA	Intergenic	L2a|LINE|L2	-1008	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
26555	chr10	21613821	21614780	+	0	NA	intron (NR_136736, intron 7 of 25)	intron (NR_136736, intron 7 of 25)	80068	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
203836	chr7	1431151	1431750	+	0	NA	Intergenic	Intergenic	28020	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
119720	chr19	41203571	41203730	+	0	NA	intron (NM_030622, intron 7 of 8)	intron (NM_030622, intron 7 of 8)	10431	NM_030622	29785		NM_030622	ENSG00000167600	CYP2S1	CYPIIS1	cytochrome P450 family 2 subfamily S member 1	protein-coding
88844	chr16	87543921	87544180	+	0	NA	Intergenic	Intergenic	49863	NR_110943	101928737		NR_110943	ENSG00000288568	ZCCHC14-DT	-	ZCCHC14 divergent transcript	ncRNA
178385	chr4	146916571	146916800	+	0	NA	intron (NM_031956, intron 4 of 12)	intron (NM_031956, intron 4 of 12)	29179	NM_001300761	83894		NM_031956	ENSG00000137473	TTC29	NYD-SP14|SPGF42|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
116523	chr19	18172371	18172530	+	0	NA	Intergenic	Intergenic	-1363	NM_006332	10437		NM_006332	ENSG00000216490	IFI30	GILT|IFI-30|IP-30|IP30	IFI30 lysosomal thiol reductase	protein-coding
55602	chr12	106841551	106841980	+	0	NA	intron (NR_147131, intron 4 of 12)	intron (NR_147131, intron 4 of 12)	-66934	NR_040246	100287944		NR_040246	ENSG00000257545	LOC100287944	-	uncharacterized LOC100287944	ncRNA
14803	chr1	146261221	146261700	+	0	NA	Intergenic	Intergenic	-32428	NM_001364006	388677		NM_203458	ENSG00000264343	NOTCH2NLA	N2N|NOTCH2NL	notch 2 N-terminal like A	protein-coding
68568	chr14	89416901	89419950	+	0	NA	intron (NR_036500, intron 1 of 1)	intron (NR_036500, intron 1 of 1)	1071	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
163154	chr3	50157451	50157750	+	0	NA	intron (NM_004186, intron 1 of 18)	intron (NM_004186, intron 1 of 18)	-1419	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
60770	chr13	45118951	45120000	+	0	NA	Intergenic	Intergenic	-1035	NM_004128	2963		NM_004128	ENSG00000188342	GTF2F2	BTF4|RAP30|TF2F2|TFIIF	general transcription factor IIF subunit 2	protein-coding
6343	chr1	27725271	27727180	+	0	NA	intron (NM_001143913, intron 1 of 8)	CpG	264	NM_001143915	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
153090	chr22	23425711	23426150	+	0	NA	Intergenic	Intergenic	-7634	NR_110538	101929374		NR_110538	ENSG00000234928	LINC01659	-	long intergenic non-protein coding RNA 1659	ncRNA
113010	chr19	7914071	7914300	+	0	NA	promoter-TSS (NM_001195259)	promoter-TSS (NM_001195259)	-645	NM_001195259	100507588		NM_001195259	ENSG00000260001	TGFBR3L	GEMP|TGFR-3L	transforming growth factor beta receptor 3 like	protein-coding
203511	chr7	668671	669430	+	0	NA	intron (NM_001164759, intron 4 of 10)	L1MB4|LINE|L1	43474	NM_002735	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
232312	chr9	134657051	134657150	+	0	NA	intron (NM_001278074, intron 1 of 65)	intron (NM_001278074, intron 1 of 65)	-4257	NR_138049	414316		NR_138049		COL5A1-AS1	C9orf104|bA54A22.4	COL5A1 antisense RNA 1	ncRNA
21387	chr1	205230751	205230850	+	0	NA	intron (NM_001375651, intron 1 of 4)	intron (NM_001375651, intron 1 of 4)	1085	NM_001375652	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
136571	chr2	177772551	177772930	+	0	NA	intron (NM_001077358, intron 8 of 18)	intron (NM_001077358, intron 8 of 18)	99418	NR_136171	105373764		NR_136171	ENSG00000229941	PDE11A-AS1	-	PDE11A antisense RNA 1	ncRNA
213978	chr7	142802871	142803330	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	32130	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
125038	chr2	9603021	9603630	+	0	NA	intron (NM_006826, intron 2 of 5)	AluSx|SINE|Alu	27672	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
157455	chr22	45251771	45252130	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-11056	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
123702	chr19	55025171	55025830	+	0	NA	intron (NM_001083899, intron 4 of 7).8	AluSz|SINE|Alu	12764	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
171315	chr3	195969821	195970430	+	0	NA	intron (NR_003264, intron 11 of 16)	intron (NR_003264, intron 11 of 16)	20154	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
143091	chr20	23086221	23086480	+	0	NA	promoter-TSS (NM_012072)	promoter-TSS (NM_012072)	-26	NM_012072	22918		NM_012072	ENSG00000125810	CD93	C1QR1|C1qR(P)|C1qRP|CDw93|ECSM3|MXRA4|dJ737E23.1	CD93 molecule	protein-coding
227809	chr9	93187651	93187950	+	0	NA	intron (NM_001282394, intron 1 of 29)	intron (NM_001282394, intron 1 of 29)	2870	NM_006648	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
18233	chr1	161038501	161039700	+	0	NA	promoter-TSS (NM_001113207)	promoter-TSS (NM_001113207)	-136	NM_001113206	100131187		NM_001113205	ENSG00000215845	TSTD1	KAT|TST	thiosulfate sulfurtransferase like domain containing 1	protein-coding
27104	chr10	27540271	27540980	+	0	NA	non-coding (NR_046172, exon 6 of 6)	non-coding (NR_046172, exon 6 of 6)	36321	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
73925	chr15	50896621	50896750	+	0	NA	Intergenic	AluSx|SINE|Alu	-11998	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
105747	chr18	2748621	2748880	+	0	NA	intron (NM_015295, intron 30 of 47)	LTR105_Mam|LTR|ERVL	93024	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
235749	chrX	48951871	48952030	+	0	NA	intron (NM_001136159, intron 1 of 8)	AluSx1|SINE|Alu	5657	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
59521	chr13	27160451	27160950	+	0	NA	intron (NR_046547, intron 1 of 2)	intron (NR_046547, intron 1 of 2)	11111	NM_182488	219333		NM_182488	ENSG00000152484	USP12	UBH1|USP12L1	ubiquitin specific peptidase 12	protein-coding
75444	chr15	65817121	65817580	+	0	NA	Intergenic	Intergenic	-25057	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
184451	chr5	100052051	100052350	+	0	NA	Intergenic	Intergenic	336054	NR_027503	100133050		NR_027503		GUSBP19	-	GUSB pseudogene 19	pseudo
173862	chr4	23333801	23334630	+	0	NA	Intergenic	Intergenic	547077	NM_001330753	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
115358	chr19	15225351	15225950	+	0	NA	Intergenic	Intergenic	6798	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
68739	chr14	91011051	91011350	+	0	NA	intron (NM_001322228, intron 1 of 15)	intron (NM_001322228, intron 1 of 15)	48924	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
165403	chr3	97821271	97822680	+	0	NA	promoter-TSS (NM_153605)	promoter-TSS (NM_153605)	-36	NM_153605	131544		NM_153605	ENSG00000080200	CRYBG3	DKFZp667G2110|vlAKAP	crystallin beta-gamma domain containing 3	protein-coding
16872	chr1	155810571	155810730	+	0	NA	intron (NM_001282861, intron 10 of 20)	AluY|SINE|Alu	-26818	NR_132767	106633816		NR_132767		SCARNA26B	-	small Cajal body-specific RNA 26B	ncRNA
164005	chr3	53167671	53167830	+	0	NA	promoter-TSS (NM_001354678)	promoter-TSS (NM_001354678)	-953	NM_001354678	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
161685	chr3	43388821	43389200	+	0	NA	intron (NM_001204831, intron 11 of 12)	intron (NM_001204831, intron 11 of 12)	-37048	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
168488	chr3	143247051	143247350	+	0	NA	Intergenic	Intergenic	-95046	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
45216	chr11	117873121	117873380	+	0	NA	intron (NM_001164837, intron 1 of 8)	intron (NM_001164837, intron 1 of 8)	3408	NM_022003	53826		NM_022003	ENSG00000137726	FXYD6	-	FXYD domain containing ion transport regulator 6	protein-coding
168615	chr3	149574571	149575330	+	0	NA	intron (NM_001348362, intron 5 of 9)	AluSx|SINE|Alu	83075	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
69654	chr14	97973221	97973480	+	0	NA	intron (NR_152748, intron 1 of 2)	intron (NR_152748, intron 1 of 2)	4774	NR_015430	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
161418	chr3	41246071	41246230	+	0	NA	TTS (NM_001322501)	TTS (NM_001322501)	46645	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
122363	chr19	49355801	49356200	+	0	NA	intron (NM_001256661, intron 4 of 12)	intron (NM_001256661, intron 4 of 12)	5517	NM_001256661	8463		NM_003598	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain transcription factor 2	protein-coding
80867	chr16	3575151	3575250	+	0	NA	intron (NR_075083, intron 1 of 20)	intron (NR_075083, intron 1 of 20)	2203	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
43958	chr11	93734651	93734950	+	0	NA	TTS (NR_002973)	TTS (NR_002973)	436	NR_002973	677822		NR_002973	ENSG00000210825	SNORA40	ACA40|SNORA40A	small nucleolar RNA, H/ACA box 40	snoRNA
133499	chr2	119950971	119951130	+	0	NA	intron (NM_002830, intron 18 of 26)	Tigger6a|DNA|TcMar-Tigger	-62027	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
203497	chr7	601351	602710	+	0	NA	promoter-TSS (NR_110054)	promoter-TSS (NR_110054)	-815	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
120065	chr19	42074121	42074430	+	0	NA	intron (NM_001330519, intron 1 of 1)	AluSc8|SINE|Alu	-1891	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
230848	chr9	129106201	129106950	+	0	NA	intron (NM_001346549, intron 2 of 13)	intron (NM_001346549, intron 2 of 13)	4218	NM_001346547	1384		NM_000755	ENSG00000095321	CRAT	CAT|CAT1|NBIA8	carnitine O-acetyltransferase	protein-coding
149656	chr21	33554021	33554280	+	0	NA	non-coding (NR_103797, exon 3 of 13)	non-coding (NR_103797, exon 3 of 13)	3488	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
23094	chr1	226665301	226666230	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	9303	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
102528	chr17	75818101	75818830	+	0	NA	intron (NM_001080419, intron 10 of 15)	intron (NM_001080419, intron 10 of 15)	25939	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
76843	chr15	77604201	77604880	+	0	NA	Intergenic	Intergenic	28372	NM_032808	84894		NM_032808	ENSG00000169783	LINGO1	LERN1|LRRN6A|MRT64|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
132282	chr2	104873271	104873630	+	0	NA	promoter-TSS (NR_110373)	promoter-TSS (NR_110373)	-855	NR_110373	102682016		NR_110373	ENSG00000229743	LINC01159	linc-Brn1b	long intergenic non-protein coding RNA 1159	ncRNA
1488	chr1	2753051	2753350	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	47668	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
224780	chr9	22046271	22046580	+	0	NA	non-coding (NR_003529, exon 4 of 19)	non-coding (NR_003529, exon 4 of 19)	-37112	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
52148	chr12	54253501	54253700	+	0	NA	intron (NM_012117, intron 2 of 4)	AluJb|SINE|Alu	5945	NM_001127322	23468		NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A|HP1alpha	chromobox 5	protein-coding
135724	chr2	169361771	169362000	+	0	NA	intron (NM_004525, intron 1 of 78)	CpG	649	NM_004525	4036		NM_004525	ENSG00000081479	LRP2	DBS|GP330|LRP-2	LDL receptor related protein 2	protein-coding
40673	chr11	64756101	64756730	+	0	NA	intron (NM_001164716, intron 3 of 17)	intron (NM_001164716, intron 3 of 17)	3559	NM_005609	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
47037	chr12	452701	454060	+	0	NA	Intergenic	CpG	-6559	NM_173593	283358		NM_173593	ENSG00000139044	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein-coding
218682	chr8	58378421	58378750	+	0	NA	Intergenic	Intergenic	-32679	NM_001330535	137886		NM_001077619	ENSG00000215114	UBXN2B	p37	UBX domain protein 2B	protein-coding
132913	chr2	111416921	111417630	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	77886	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
195118	chr6	35663571	35664480	+	0	NA	TTS (NR_049873)	TTS (NR_049873)	764	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
20140	chr1	192573201	192573930	+	0	NA	Intergenic	Intergenic	-2208	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
34320	chr10	132157401	132157600	+	0	NA	intron (NM_001323090, intron 19 of 23)	L1ME4b|LINE|L1	-29448	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
52841	chr12	57088401	57089400	+	0	NA	promoter-TSS (NM_001330305)	promoter-TSS (NM_001330305)	-214	NM_001330305	4665		NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding
1259	chr1	2303151	2303530	+	0	NA	exon (NM_003036, exon 3 of 7)	exon (NM_003036, exon 3 of 7)	49321	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
149906	chr21	36133701	36133900	+	0	NA	intron (NR_038892, intron 2 of 3)	intron (NR_038892, intron 2 of 3)	-1279	NM_001236	874		NM_001236	ENSG00000159231	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
50754	chr12	49016951	49017300	+	0	NA	intron (NM_001206709, intron 1 of 11)	intron (NM_001206709, intron 1 of 11)	1651	NM_001206710	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
304	chr1	965751	968100	+	0	NA	intron (NM_001160184, intron 2 of 14)	CpG-23	443	NM_001160184	84069		NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
113237	chr19	8487251	8488350	+	0	NA	intron (NM_031203, intron 16 of 16)	intron (NM_031203, intron 16 of 16)	14840	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
35742	chr11	2103351	2103450	+	0	NA	Intergenic	Intergenic	30809	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
166822	chr3	122789651	122790280	+	0	NA	intron (NM_024610, intron 1 of 7)	AluSz|SINE|Alu	3866	NM_024610	79663		NM_024610	ENSG00000169087	HSPBAP1	PASS1	HSPB1 associated protein 1	protein-coding
58085	chr12	124588771	124589300	+	0	NA	Intergenic	L3|LINE|CR1	-21423	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
211612	chr7	105885351	105885750	+	0	NA	Intergenic	Intergenic	-8951	NM_001385596	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
114757	chr19	13557851	13558030	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-51461	NM_023035	773		NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|DEE42|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6	calcium voltage-gated channel subunit alpha1 A	protein-coding
37650	chr11	22636451	22636550	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-10677	NM_022725	2188		NM_022725	ENSG00000183161	FANCF	FAF	FA complementation group F	protein-coding
202984	chr6	161393601	161394430	+	0	NA	intron (NM_013987, intron 8 of 10)	intron (NM_013987, intron 8 of 10)	-76962	NR_134593	105378098		NR_134593		LOC105378098	-	uncharacterized LOC105378098	ncRNA
122069	chr19	48716851	48717800	+	0	NA	promoter-TSS (NM_001297753)	promoter-TSS (NM_001297753)	-304	NM_001297753	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
104348	chr17	80984021	80984280	+	0	NA	Intergenic	Intergenic	-7691	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
191103	chr6	3990771	3991200	+	0	NA	Intergenic	LTR36|LTR|ERV1	-30315	NM_003913	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
208855	chr7	73710151	73710700	+	0	NA	promoter-TSS (NR_036247)	promoter-TSS (NR_036247)	-892	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
78999	chr15	101968821	101970050	+	0	NA	intron (NR_003659, intron 2 of 10)	intron (NR_003659, intron 2 of 10)	-4089	NR_128720	103504738		NR_128720	ENSG00000278739	MIR6859-4	hsa-mir-6859-4	microRNA 6859-4	ncRNA
100656	chr17	63703851	63704530	+	0	NA	3' UTR (NM_153335, exon 9 of 9)	3' UTR (NM_153335, exon 9 of 9)	3852	NR_046273	729683		NR_046273		LOC729683	-	uncharacterized LOC729683	ncRNA
3262	chr1	15046501	15046750	+	0	NA	intron (NM_201628, intron 4 of 14)	intron (NM_201628, intron 4 of 14)	100706	NM_001017999	23254		NM_015209	ENSG00000189337	KAZN	C1orf196|KAZ	kazrin, periplakin interacting protein	protein-coding
213034	chr7	131039421	131039780	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	67430	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
200150	chr6	130366001	130366980	+	0	NA	promoter-TSS (NM_001258275)	promoter-TSS (NM_001258275)	209	NM_001258276	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
135623	chr2	168191821	168192080	+	0	NA	intron (NM_013233, intron 1 of 17)	LTR50|LTR|ERVL	55645	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
69333	chr14	93906651	93906980	+	0	NA	intron (NR_027004, intron 10 of 10)	intron (NR_027004, intron 10 of 10)	-12079	NM_001207071	90050		NM_138344	ENSG00000140067	FAM181A	C14orf152	family with sequence similarity 181 member A	protein-coding
115671	chr19	16159771	16160130	+	0	NA	Intergenic	AluSx|SINE|Alu	13575	NM_054113	117286		NM_054113	ENSG00000141977	CIB3	KIP3	calcium and integrin binding family member 3	protein-coding
213301	chr7	135147251	135149280	+	0	NA	5' UTR (NM_018295, exon 1 of 2)	5' UTR (NM_018295, exon 1 of 2)	193	NM_018295	55281		NM_018295	ENSG00000146859	TMEM140	-	transmembrane protein 140	protein-coding
238554	chrX	153792621	153792880	+	0	NA	intron (NM_174869, intron 1 of 11)	intron (NM_174869, intron 1 of 11)	-1409	NM_001204527	6748		NM_006280	ENSG00000180879	SSR4	CDG1Y|TRAPD	signal sequence receptor subunit 4	protein-coding
176430	chr4	89268201	89268400	+	0	NA	intron (NM_198281, intron 1 of 1)	L2c|LINE|L2	39500	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
223354	chr8	143860471	143861100	+	0	NA	exon (NM_031308, exon 2 of 2)	exon (NM_031308, exon 2 of 2)	17682	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
101553	chr17	68018171	68018980	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17160	NM_002266	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
59670	chr13	28679421	28679830	+	0	NA	TTS (NM_015932)	TTS (NM_015932)	20495	NM_015932	51371		NM_015932	ENSG00000132963	POMP	C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1	proteasome maturation protein	protein-coding
148874	chr21	8441901	8443600	+	0	NA	non-coding (NR_003287, exon 1 of 1).3	non-coding (NR_003287, exon 1 of 1).3	1604	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
100906	chr17	64419851	64420700	+	0	NA	Intergenic	Intergenic	-28840	NM_001085423	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
53187	chr12	59737951	59738250	+	0	NA	intron (NR_073056, intron 3 of 6)	intron (NR_073056, intron 3 of 6)	48730	NM_004731	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
72508	chr15	33201651	33202100	+	0	NA	Intergenic	Intergenic	-7161	NM_001277314	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
94525	chr17	29565621	29566300	+	0	NA	intron (NM_198147, intron 1 of 1)	intron (NM_198147, intron 1 of 1)	1077	NM_198147	116236		NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding
82933	chr16	21838771	21840300	+	0	NA	intron (NM_001310148, intron 5 of 7)	AluSc8|SINE|Alu	18122	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
47814	chr12	6586151	6587050	+	0	NA	intron (NM_001273, intron 25 of 39)	AluJr4|SINE|Alu	-4991	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
73717	chr15	45153201	45153400	+	0	NA	intron (NM_175940, intron 25 of 33)	intron (NM_175940, intron 25 of 33)	23306	NM_017434	53905		NM_017434	ENSG00000137857	DUOX1	LNOX1|NOXEF1|THOX1	dual oxidase 1	protein-coding
208961	chr7	74188171	74188330	+	0	NA	intron (NM_022170, intron 2 of 6)	intron (NM_022170, intron 2 of 6)	-2948	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
4144	chr1	19342401	19342630	+	0	NA	intron (NM_001206541, intron 8 of 8)	intron (NM_001206541, intron 8 of 8)	30189	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
222962	chr8	143188371	143188730	+	0	NA	Intergenic	Intergenic	-24668	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
127167	chr2	38213801	38214280	+	0	NA	Intergenic	Tigger12c|DNA|TcMar-Tigger	82935	NR_027252	285154		NM_173652	ENSG00000232973	CYP1B1-AS1	C2orf58	CYP1B1 antisense RNA 1	ncRNA
196975	chr6	53064451	53066260	+	0	NA	promoter-TSS (NM_033480)	promoter-TSS (NM_033480)	-49	NM_033480	26268		NM_012347	ENSG00000112146	FBXO9	FBX9|NY-REN-57|VCIA1|dJ341E18.2	F-box protein 9	protein-coding
13019	chr1	111198901	111199800	+	0	NA	intron (NM_001271833, intron 2 of 11)	intron (NM_001271833, intron 2 of 11)	1296	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
7997	chr1	37993921	37994180	+	0	NA	Intergenic	AluSc|SINE|Alu	-4028	NM_006802	10946		NM_006802	ENSG00000183431	SF3A3	PRP9|PRPF9|SAP61|SF3a60	splicing factor 3a subunit 3	protein-coding
125974	chr2	25265751	25266550	+	0	NA	intron (NR_135490, intron 6 of 23)	intron (NR_135490, intron 6 of 23)	-13835	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
197260	chr6	70415301	70415800	+	0	NA	intron (NM_001331000, intron 2 of 19)	intron (NM_001331000, intron 2 of 19)	-1592	NR_147708	105377849		NR_147708	ENSG00000224349	FAM135A-AS1	-	FAM135A antisense RNA 1	ncRNA
81905	chr16	11729151	11729250	+	0	NA	intron (NR_136674, intron 3 of 8)	MIR3|SINE|MIR	13657	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
131446	chr2	96320911	96322400	+	0	NA	Intergenic	CpG	-3662	NM_001008949	150771		NM_178495	ENSG00000198885	ITPRIPL1	D1B|KIAA1754L	ITPRIP like 1	protein-coding
270	chr1	928651	929380	+	0	NA	intron (NM_001385641, intron 2 of 13)	intron (NM_001385641, intron 2 of 13)	3284	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
35308	chr11	1027971	1028550	+	0	NA	exon (NM_005961, exon 14 of 33)	exon (NM_005961, exon 14 of 33)	8458	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
237425	chrX	119647921	119648880	+	0	NA	intron (NM_145799, intron 5 of 10)	intron (NM_145799, intron 5 of 10)	-1552	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
213807	chr7	141013171	141013580	+	0	NA	intron (NM_053035, intron 1 of 2)	intron (NM_053035, intron 1 of 2)	1304	NM_016071	51650		NM_016071	ENSG00000090263	MRPS33	CGI-139|MRP-S33|PTD003|S33mt|mS33	mitochondrial ribosomal protein S33	protein-coding
65239	chr14	49870051	49870580	+	0	NA	Intergenic	Intergenic	-7466	NR_027260	378706		NR_027260	ENSG00000274012	RN7SL2	7L1C|7L30.1|7SL1c|RNSRP2	RNA component of signal recognition particle 7SL2	scRNA
46565	chr11	128494421	128495430	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	27385	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
61231	chr13	49689271	49689850	+	0	NA	intron (NR_103802, intron 1 of 4)	AluSg|SINE|Alu	1926	NM_032565	84650		NM_032565	ENSG00000123179	EBPL	EBRP	EBP like	protein-coding
136820	chr2	182186071	182186330	+	0	NA	intron (NM_001258312, intron 13 of 15)	intron (NM_001258312, intron 13 of 15)	55863	NM_001258314	5136		NM_005019	ENSG00000115252	PDE1A	CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A	protein-coding
10302	chr1	64857971	64858530	+	0	NA	intron (NM_001321857, intron 9 of 24)	L2b|LINE|L2	108299	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
53389	chr12	64691521	64691780	+	0	NA	intron (NR_040718, intron 3 of 3)	intron (NR_040718, intron 3 of 3)	67756	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
182455	chr5	62320351	62320450	+	0	NA	intron (NM_001243952, intron 2 of 20)	L1ME4b|LINE|L1	14194	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
10971	chr1	84270771	84270930	+	0	NA	Intergenic	AluY|SINE|Alu	-27688	NM_001010971	148418		NM_001010971	ENSG00000203943	SAMD13	DJL|HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding
188724	chr5	157366951	157367050	+	0	NA	intron (NR_136205, intron 1 of 2)	intron (NR_136205, intron 1 of 2)	-21323	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
15733	chr1	151058901	151060000	+	0	NA	promoter-TSS (NM_006818)	promoter-TSS (NM_006818)	172	NM_020239	56882		NM_020239	ENSG00000197622	CDC42SE1	SCIP1|SPEC1	CDC42 small effector 1	protein-coding
186048	chr5	134053521	134054650	+	0	NA	Intergenic	Intergenic	-49110	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
65988	chr14	57403021	57403280	+	0	NA	intron (NM_001011713, intron 4 of 4)	AluSz|SINE|Alu	12564	NM_001011713	122830		NM_001011713	ENSG00000139977	NAA30	C14orf35|MAK3|Mak3p|NAT12|NAT12P	N-alpha-acetyltransferase 30, NatC catalytic subunit	protein-coding
211966	chr7	112787571	112787730	+	0	NA	intron (NM_022484, intron 1 of 4)	AluSx1|SINE|Alu	2743	NM_022484	64418		NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
31807	chr10	98446201	98447730	+	0	NA	promoter-TSS (NM_001322481)	promoter-TSS (NM_001322481)	-2	NM_001322477	3257		NM_000195	ENSG00000107521	HPS1	BLOC3S1|HPS	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding
225926	chr9	40584071	40584780	+	0	NA	Intergenic	TAR1|Satellite|telo	84444	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
46590	chr11	128518671	128518900	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	3525	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
51124	chr12	50101071	50101330	+	0	NA	TTS (NM_003076)	TTS (NM_003076)	-2808	NM_001257199	2819		NM_005276	ENSG00000167588	GPD1	GPD-C|GPDH-C|HTGTI	glycerol-3-phosphate dehydrogenase 1	protein-coding
162280	chr3	47378771	47378930	+	0	NA	Intergenic	L1MB3|LINE|L1	-2171	NM_001304482	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
109625	chr19	982271	983150	+	0	NA	promoter-TSS (NM_001372086)	promoter-TSS (NM_001372086)	-218	NM_001372085	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
99036	chr17	48877001	48877400	+	0	NA	intron (NR_135674, intron 3 of 3)	AluSz|SINE|Alu	-15587	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
155302	chr22	38180711	38181300	+	0	NA	intron (NM_001199562, intron 1 of 15)	intron (NM_001199562, intron 1 of 15)	825	NM_001199562	8398		NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
117253	chr19	19444471	19445330	+	0	NA	intron (NM_001384516, intron 2 of 12)	intron (NM_001384516, intron 2 of 12)	9837	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
188623	chr5	157208471	157208630	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	27710	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
235776	chrX	49075421	49076700	+	0	NA	intron (NM_007075, intron 7 of 11)	intron (NM_007075, intron 7 of 11)	-2058	NM_007213	11230		NM_007213	ENSG00000243279	PRAF2	JM4|Yip6a	PRA1 domain family member 2	protein-coding
233085	chr9	137103651	137103950	+	0	NA	intron (NM_016219, intron 8 of 12)	intron (NM_016219, intron 8 of 12)	10933	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
18315	chr1	161173171	161173600	+	0	NA	intron (NM_001199874, intron 6 of 7)	intron (NM_001199874, intron 6 of 7)	4122	NM_003779	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
107728	chr18	49959171	49959530	+	0	NA	intron (NM_001080467, intron 12 of 39)	intron (NM_001080467, intron 12 of 39)	145327	NR_117096	103091864		NR_117096	ENSG00000267322	SNHG22	SCARNA17|SCARNA17HG	small nucleolar RNA host gene 22	ncRNA
59409	chr13	25281451	25282130	+	0	NA	intron (NR_169592, intron 1 of 13)	intron (NR_169592, intron 1 of 13)	5698	NM_001385233	9107		NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
210278	chr7	99417971	99418880	+	0	NA	3' UTR (NM_001198879, exon 9 of 9)	3' UTR (NM_001198879, exon 9 of 9)	9253	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
86608	chr16	67329171	67329330	+	0	NA	intron (NM_018296, intron 1 of 13)	L1MC5|LINE|L1	2435	NM_018296	55282		NM_018296	ENSG00000159708	LRRC36	RORBP70|XLHSRF2	leucine rich repeat containing 36	protein-coding
226291	chr9	68325371	68325530	+	0	NA	Intergenic	LTR5A|LTR|ERVK	22583	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
11046	chr1	84992871	84993430	+	0	NA	intron (NM_001330647, intron 1 of 14)	Tigger1|DNA|TcMar-Tigger	3963	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
14071	chr1	120811621	120812080	+	0	NA	intron (NM_001351372, intron 5 of 29)	intron (NM_001351372, intron 5 of 29)	6294	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
194513	chr6	33293071	33293880	+	0	NA	exon (NM_001243738, exon 14 of 17)	exon (NM_001243738, exon 14 of 17)	3230	NR_106892	102465501		NR_106892	ENSG00000284064	MIR6834	hsa-mir-6834	microRNA 6834	ncRNA
10748	chr1	76290351	76290730	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	215794	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
23968	chr1	235162471	235163850	+	0	NA	Intergenic	Intergenic	-1910	NR_144491	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
48716	chr12	10696201	10696830	+	0	NA	Intergenic	Intergenic	-22463	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
162001	chr3	46378321	46378830	+	0	NA	intron (NR_125406, intron 2 of 3)	intron (NR_125406, intron 2 of 3)	8433	NM_001100168	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
192217	chr6	18213001	18214430	+	0	NA	exon (NM_001364614, exon 19 of 22)	exon (NM_001364614, exon 19 of 22)	50815	NM_003472	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
177205	chr4	108361901	108362100	+	0	NA	Intergenic	Intergenic	189880	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
162334	chr3	47664571	47664730	+	0	NA	intron (NM_003074, intron 19 of 27)	intron (NM_003074, intron 19 of 27)	-2956	NR_145791	109623484		NR_145791		SNORD146	-	small nucleolar RNA, C/D box 146	snoRNA
50274	chr12	46356101	46356380	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	16533	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
29032	chr10	66925871	66926100	+	0	NA	promoter-TSS (NM_178011)	promoter-TSS (NM_178011)	-51	NM_178011	347731		NM_178011	ENSG00000198739	LRRTM3	-	leucine rich repeat transmembrane neuronal 3	protein-coding
122110	chr19	48788101	48788980	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	22489	NM_001284325	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
12154	chr1	100248551	100250180	+	0	NA	intron (NM_001918, intron 1 of 10)	L2c|LINE|L2	469	NM_001918	1629		NM_001918	ENSG00000137992	DBT	BCATE2|BCKAD-E2|BCKADE2|BCKDH-E2|BCOADC-E2|E2|E2B	dihydrolipoamide branched chain transacylase E2	protein-coding
140625	chr2	233448301	233448700	+	0	NA	intron (NM_001377259, intron 12 of 27)	MER51A|LTR|ERV1	29288	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
174364	chr4	38855871	38857230	+	0	NA	intron (NM_006068, intron 1 of 1)	intron (NM_006068, intron 1 of 1)	267	NM_006068	10333		NM_006068	ENSG00000174130	TLR6	CD286	toll like receptor 6	protein-coding
222616	chr8	141056271	141056430	+	0	NA	Intergenic	Intergenic	-54271	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
105592	chr18	596151	597250	+	0	NA	promoter-TSS (NM_001289036)	promoter-TSS (NM_001289036)	-288	NM_001375492	27098		NM_014410	ENSG00000079101	CLUL1	RA337M	clusterin like 1	protein-coding
127239	chr2	38669371	38670330	+	0	NA	intron (NM_138801, intron 1 of 6)	AluSc|SINE|Alu	3736	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
94899	chr17	31558701	31560050	+	0	NA	promoter-TSS (NR_029710)	promoter-TSS (NR_029710)	-621	NR_029710	406968		NR_029710	ENSG00000207614	MIR193A	MIRN193|MIRN193A|mir-193a	microRNA 193a	ncRNA
64618	chr14	30906871	30907030	+	0	NA	exon (NM_001083893, exon 14 of 18)	exon (NM_001083893, exon 14 of 18)	-17142	NR_038356	100506071		NR_038356	ENSG00000258525	LOC100506071	-	uncharacterized LOC100506071	ncRNA
131479	chr2	96487651	96487950	+	0	NA	Intergenic	AluJr|SINE|Alu	17557	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
63868	chr14	21723451	21724230	+	0	NA	Intergenic	Intergenic	-52823	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
201477	chr6	148771651	148772380	+	0	NA	intron (NM_005715, intron 1 of 7)	L4_C_Mam|LINE|RTE-X	24985	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
119173	chr19	39417651	39418200	+	0	NA	exon (NM_001351693, exon 9 of 20)	exon (NM_001351693, exon 9 of 20)	4146	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
3993	chr1	18916071	18916430	+	0	NA	intron (NM_001136265, intron 5 of 8)	intron (NM_001136265, intron 5 of 8)	-13451	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
87746	chr16	75233901	75234930	+	0	NA	intron (NM_001170719, intron 5 of 6).2	intron (NM_001170719, intron 5 of 6).2	4245	NM_001170721	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
83544	chr16	27973571	27973730	+	0	NA	intron (NM_001109763, intron 1 of 6)	MIR|SINE|MIR	-85493	NM_144675	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
98341	chr17	46285351	46285450	+	0	NA	3' UTR (NM_001352769, exon 5 of 5)	3' UTR (NM_001352769, exon 5 of 5)	-9731	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
139121	chr2	218987101	218987680	+	0	NA	Intergenic	Intergenic	-2206	NM_017521	54738		NM_017521	ENSG00000163497	FEV	HSRNAFEV|PET-1	FEV transcription factor, ETS family member	protein-coding
224852	chr9	28189271	28189590	+	0	NA	intron (NM_152570, intron 5 of 6)	(AGGA)n|Simple_repeat|Simple_repeat	529875	NM_152570	158038		NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
30990	chr10	88092871	88093300	+	0	NA	Intergenic	Intergenic	229460	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
38242	chr11	36478251	36478350	+	0	NA	Intergenic	Intergenic	31972	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
111148	chr19	3289421	3289680	+	0	NA	intron (NR_033342, intron 10 of 12)	AluSx1|SINE|Alu	64272	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
83052	chr16	22328901	22329880	+	0	NA	intron (NM_001258036, intron 19 of 19).2	intron (NM_001258036, intron 19 of 19).2	31981	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
89623	chr16	89317171	89317780	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-2977	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
222134	chr8	132192001	132192300	+	0	NA	intron (NM_004519, intron 1 of 14)	intron (NM_004519, intron 1 of 14)	-86885	NM_001145095	10086		NM_005712	ENSG00000132297	HHLA1	PLA2L	HHLA1 neighbor of OC90	protein-coding
63161	chr13	113652471	113652700	+	0	NA	intron (NM_000705, intron 4 of 6)	intron (NM_000705, intron 4 of 6)	5613	NM_000705	496		NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting subunit beta	protein-coding
92589	chr17	9252601	9253080	+	0	NA	intron (NM_004853, intron 7 of 7)	MER58C|DNA|hAT-Charlie	-73722	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
103206	chr17	77473571	77474300	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	-1700	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
69215	chr14	92714771	92715200	+	0	NA	intron (NM_001008530, intron 6 of 14)	intron (NM_001008530, intron 6 of 14)	33642	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
30965	chr10	87860051	87860830	+	0	NA	3' UTR (NM_001126049, exon 1 of 1)	3' UTR (NM_001126049, exon 1 of 1)	3093	NM_001126049	100144748		NM_001126049	ENSG00000227268	KLLN	CWS4|KILLIN	killin, p53 regulated DNA replication inhibitor	protein-coding
142629	chr20	5615301	5615500	+	0	NA	Intergenic	AluJb|SINE|Alu	-4394	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
71282	chr14	105257151	105257800	+	0	NA	intron (NM_001242788, intron 2 of 16)	intron (NM_001242788, intron 2 of 16)	-8071	NM_001242789	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
25888	chr10	11267151	11267800	+	0	NA	intron (NM_001326330, intron 6 of 12)	intron (NM_001326330, intron 6 of 12)	77199	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
76419	chr15	74781601	74782900	+	0	NA	5' UTR (NM_004383, exon 1 of 13)	5' UTR (NM_004383, exon 1 of 13)	166	NM_004383	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
128819	chr2	62801171	62801330	+	0	NA	intron (NM_001142616, intron 5 of 22)	LTR82A|LTR|ERVL	94353	NM_001354217	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
172186	chr4	1240201	1241250	+	0	NA	intron (NM_001377186, intron 1 of 8)	intron (NM_001377186, intron 1 of 8)	8003	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
23324	chr1	228095801	228096450	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	-1138	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
60250	chr13	40585371	40585730	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	81091	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
166795	chr3	122563501	122565050	+	0	NA	promoter-TSS (NM_001146104)	promoter-TSS (NM_001146104)	25	NM_001146105	83666		NM_031458	ENSG00000138496	PARP9	ARTD9|BAL|BAL1|MGC:7868	poly(ADP-ribose) polymerase family member 9	protein-coding
192030	chr6	16440551	16441050	+	0	NA	intron (NM_000332, intron 7 of 8)	L1M8|LINE|L1	202213	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
180459	chr5	10639821	10640630	+	0	NA	intron (NM_001164440, intron 3 of 3)	intron (NM_001164440, intron 3 of 3)	76155	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
34090	chr10	125159951	125160050	+	0	NA	promoter-TSS (NM_001321012)	promoter-TSS (NM_001321012)	-43	NM_001321012	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
97113	chr17	42516401	42516600	+	0	NA	intron (NM_001378535, intron 22 of 22)	intron (NM_001378535, intron 22 of 22)	2312	NR_049808	100847046		NR_049808	ENSG00000283929	MIR5010	mir-5010	microRNA 5010	ncRNA
113169	chr19	8393101	8393300	+	0	NA	intron (NM_004218, intron 1 of 4)	L3|LINE|CR1	-2509	NR_038237	100507567		NR_038237	ENSG00000269386	RAB11B-AS1	MIR4999HG	RAB11B antisense RNA 1	ncRNA
36229	chr11	3640151	3640250	+	0	NA	exon (NM_053017, exon 2 of 4)	exon (NM_053017, exon 2 of 4)	1792	NM_001297668	116969		NM_053017	ENSG00000167311	ART5	ARTC5	ADP-ribosyltransferase 5	protein-coding
141071	chr2	238270671	238270830	+	0	NA	intron (NM_022817, intron 6 of 22)	intron (NM_022817, intron 6 of 22)	17860	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
151070	chr21	44767051	44767750	+	0	NA	Intergenic	Intergenic	34420	NM_182688	7327		NM_003343	ENSG00000184787	UBE2G2	UBC7	ubiquitin conjugating enzyme E2 G2	protein-coding
110937	chr19	2821651	2821950	+	0	NA	intron (NM_001102651, intron 1 of 4)	AluSg|SINE|Alu	1932	NM_001102651	115196		NM_152303	ENSG00000172006	ZNF554	-	zinc finger protein 554	protein-coding
121889	chr19	48363801	48365000	+	0	NA	promoter-TSS (NR_130317)	promoter-TSS (NR_130317)	33	NM_012451	23546		NM_012451	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding
211998	chr7	114083771	114083930	+	0	NA	Intergenic	Intergenic	-2477	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
25181	chr10	5547971	5548130	+	0	NA	Intergenic	Intergenic	-21804	NR_120496	100132159		NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
145919	chr20	46007921	46008380	+	0	NA	promoter-TSS (NM_004994)	promoter-TSS (NM_004994)	-758	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
21189	chr1	203810601	203811130	+	0	NA	intron (NM_001376350, intron 2 of 17)	AluSq|SINE|Alu	13342	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
213586	chr7	139379621	139379950	+	0	NA	intron (NM_016019, intron 2 of 9)	AluSx|SINE|Alu	19891	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
43241	chr11	75507301	75507500	+	0	NA	intron (NM_030792, intron 1 of 16)	MIR3|SINE|MIR	18173	NM_001351168	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
34065	chr10	124916391	124918150	+	0	NA	Intergenic	CpG	-24853	NM_017580	54764		NM_017580	ENSG00000019995	ZRANB1	TRABID	zinc finger RANBP2-type containing 1	protein-coding
158524	chr3	3171851	3171950	+	0	NA	intron (NM_016302, intron 4 of 10)	intron (NM_016302, intron 4 of 10)	7791	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
198630	chr6	107785271	107785680	+	0	NA	intron (NM_198081, intron 1 of 7)	LTR75|LTR|ERVL	38838	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
211862	chr7	111014301	111014500	+	0	NA	intron (NM_032549, intron 3 of 5)	Tigger19b|DNA|TcMar-Tigger	-76606	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
85922	chr16	57092301	57093730	+	0	NA	intron (NM_152727, intron 1 of 15)	CpG	432	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
97773	chr17	44556881	44557600	+	0	NA	promoter-TSS (NM_001466)	promoter-TSS (NM_001466)	-244	NM_001466	2535		NM_001466	ENSG00000180340	FZD2	Fz2|OMOD2|fz-2|fzE2|hFz2	frizzled class receptor 2	protein-coding
85893	chr16	57060971	57062030	+	0	NA	non-coding (NR_169515, exon 30 of 48)	non-coding (NR_169515, exon 30 of 48)	-31083	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
225822	chr9	37786451	37786550	+	0	NA	Intergenic	AluSz|SINE|Alu	-1408	NM_001002269	51010		NM_016042	ENSG00000107371	EXOSC3	CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10	exosome component 3	protein-coding
213315	chr7	135167051	135167150	+	0	NA	TTS (NM_018295)	TTS (NM_018295)	2374	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
82439	chr16	16329701	16329900	+	0	NA	TTS (NR_106828).2	TTS (NR_106828).2	495	NR_107060	102465908		NR_107060	ENSG00000277698	MIR6770-2	hsa-mir-6770-2	microRNA 6770-2	ncRNA
11304	chr1	89283521	89283780	+	0	NA	Intergenic	Intergenic	6712	NR_077244	729930		NR_077244		LOC729930	-	intraflagellar transport associated protein pseudogene	pseudo
43440	chr11	77777721	77778480	+	0	NA	intron (NM_016578, intron 1 of 15)	intron (NM_016578, intron 1 of 15)	42734	NM_016578	51773		NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
38035	chr11	35150301	35150750	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	11354	NM_001001391	960		NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECM-III|ECMR-III|H-CAM|HCELL|HUTCH-1|HUTCH-I|Hermes-1|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (IN blood group)	protein-coding
2669	chr1	10510451	10511950	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	36250	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
119645	chr19	40811911	40812600	+	0	NA	Intergenic	Intergenic	-1155	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
17187	chr1	156238821	156239080	+	0	NA	intron (NM_001199661, intron 4 of 6)	intron (NM_001199661, intron 4 of 6)	-3234	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
178337	chr4	145827771	145828250	+	0	NA	intron (NM_178835, intron 7 of 14)	intron (NM_178835, intron 7 of 14)	110813	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
60451	chr13	41016351	41016830	+	0	NA	intron (NM_001370332, intron 1 of 10)	intron (NM_001370332, intron 1 of 10)	2726	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
171978	chr4	922571	923150	+	0	NA	intron (NM_005255, intron 1 of 27)	L1MD1|LINE|L1	9456	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
50122	chr12	45192401	45192600	+	0	NA	intron (NR_037144, intron 1 of 2)	intron (NR_037144, intron 1 of 2)	23506	NR_037144	51054		NM_015899	ENSG00000293316	PLEKHA8P1	FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2	pleckstrin homology domain containing A8 pseudogene 1	pseudo
138421	chr2	205660671	205661040	+	0	NA	Intergenic	Intergenic	-21645	NM_201264	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
57019	chr12	120645121	120645580	+	0	NA	intron (NM_001033677, intron 1 of 5)	intron (NM_001033677, intron 1 of 5)	4731	NM_001033677	9478		NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
179943	chr5	773921	774180	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	10679	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
118473	chr19	35895871	35896730	+	0	NA	intron (NM_139239, intron 7 of 11)	intron (NM_139239, intron 7 of 11)	3437	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
223182	chr8	143560821	143561480	+	0	NA	intron (NM_001166237, intron 8 of 13).2	intron (NM_001166237, intron 8 of 13).2	2804	NM_024736	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
78493	chr15	92921121	92921380	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	16851	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
168739	chr3	150925671	150926250	+	0	NA	TTS (NR_046380)	TTS (NR_046380)	18276	NM_052995	7401		NM_052995	ENSG00000163646	CLRN1	RP61|USH3|USH3A	clarin 1	protein-coding
237359	chrX	118823321	118824530	+	0	NA	5' UTR (NM_001312891, exon 1 of 3)	5' UTR (NM_001312891, exon 1 of 3)	101	NM_173798	170261		NM_173798	ENSG00000174460	ZCCHC12	PNMA7A|SIZN|SIZN1	zinc finger CCHC-type containing 12	protein-coding
107357	chr18	45920401	45920680	+	0	NA	intron (NM_020964, intron 16 of 43)	MSTB1|LTR|ERVL-MaLR	46789	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
117748	chr19	29663701	29664300	+	0	NA	Intergenic	Intergenic	-1461	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
33137	chr10	112375801	112377600	+	0	NA	intron (NM_016234, intron 1 of 20)	intron (NM_016234, intron 1 of 20)	502	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
63208	chr13	113820371	113820530	+	0	NA	TTS (NM_000820)	TTS (NM_000820)	4840	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
170266	chr3	184275721	184276430	+	0	NA	promoter-TSS (NM_001100121)	promoter-TSS (NM_001100121)	53	NM_001100121	9718		NM_001037324	ENSG00000145194	ECE2	EEF1AKMT4	endothelin converting enzyme 2	protein-coding
182329	chr5	59086001	59086330	+	0	NA	intron (NM_001349242, intron 7 of 16)	MIR|SINE|MIR	-46689	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
45156	chr11	117203951	117204050	+	0	NA	TTS (NM_004716)	TTS (NM_004716)	-2086	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
116158	chr19	17390601	17392100	+	0	NA	Intergenic	CpG	-14008	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
130934	chr2	87494621	87494880	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	24800	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
184549	chr5	102755801	102756950	+	0	NA	intron (NM_001364588, intron 1 of 24)	intron (NM_001364588, intron 1 of 24)	1070	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
203164	chr6	167079871	167080230	+	0	NA	Intergenic	Intergenic	-31757	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
90875	chr17	2379771	2380450	+	0	NA	3' UTR (NM_001098509, exon 23 of 23)	3' UTR (NM_001098509, exon 23 of 23)	20950	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
200232	chr6	131627771	131629130	+	0	NA	promoter-TSS (NM_015979)	promoter-TSS (NM_015979)	-137	NM_001376518	9439		NM_004830	ENSG00000112282	MED23	ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2	mediator complex subunit 23	protein-coding
51272	chr12	51169351	51169650	+	0	NA	intron (NM_001173453, intron 1 of 13)	AluSx|SINE|Alu	3635	NM_005653	7024		NM_005653	ENSG00000135457	TFCP2	LBP1C|LSF|LSF1D|SEF|TFCP2C	transcription factor CP2	protein-coding
10556	chr1	67148901	67149380	+	0	NA	Intergenic	Intergenic	-14170	NR_075077	400757		NM_001013674	ENSG00000203963	C1orf141	-	chromosome 1 open reading frame 141	protein-coding
161637	chr3	43299701	43300330	+	0	NA	intron (NM_017719, intron 2 of 6)	intron (NM_017719, intron 2 of 6)	13475	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
148029	chr20	63174451	63174550	+	0	NA	Intergenic	Intergenic	-4000	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
220360	chr8	99714221	99714480	+	0	NA	intron (NM_152564, intron 36 of 61)	L1MC4a|LINE|L1	-177489	NR_030596	100126309		NR_030596	ENSG00000216069	MIR875	MIRN875|hsa-mir-875	microRNA 875	ncRNA
164011	chr3	53171871	53172700	+	0	NA	intron (NM_001354676, intron 1 of 17)	intron (NM_001354676, intron 1 of 17)	3582	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
168951	chr3	152375051	152375150	+	0	NA	intron (NM_001376837, intron 2 of 9)	FLAM_A|SINE|Alu	-34110	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
3756	chr1	16663351	16663950	+	0	NA	Intergenic	AluJo|SINE|Alu	3298	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
45398	chr11	118336021	118336630	+	0	NA	Intergenic	AluJo|SINE|Alu	6380	NM_000732	915		NM_000732	ENSG00000167286	CD3D	CD3-DELTA|CD3DELTA|IMD19|T3D	CD3 delta subunit of T-cell receptor complex	protein-coding
230910	chr9	129261451	129261750	+	0	NA	Intergenic	Intergenic	-20816	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
101128	chr17	65032851	65033150	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluSx1|SINE|Alu	22774	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
182023	chr5	55440251	55441100	+	0	NA	intron (NM_176895, intron 4 of 5)	intron (NM_176895, intron 4 of 5)	68251	NR_049869	100847019		NR_049869	ENSG00000265135	MIR5687	-	microRNA 5687	ncRNA
173612	chr4	11100101	11100480	+	0	NA	Intergenic	Intergenic	-268537	NR_030298	693157		NR_030298	ENSG00000207716	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
113285	chr19	8541271	8541430	+	0	NA	intron (NM_012335, intron 15 of 27)	MER5A|DNA|hAT-Charlie	-27183	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
130078	chr2	74494601	74494800	+	0	NA	TTS (NM_001376141)	TTS (NM_001376141)	4903	NM_001282430	85474		NM_001009812	ENSG00000179528	LBX2	LP3727	ladybird homeobox 2	protein-coding
154749	chr22	36486351	36487050	+	0	NA	TTS (NM_001102371)	TTS (NM_001102371)	-5060	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
224606	chr9	20396551	20396850	+	0	NA	intron (NM_001286691, intron 5 of 10)	intron (NM_001286691, intron 5 of 10)	14538	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
46462	chr11	128285021	128285700	+	0	NA	Intergenic	Intergenic	76594	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
180325	chr5	6446071	6446230	+	0	NA	Intergenic	Intergenic	-2709	NM_001145161	134111		NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 QL1	protein-coding
5034	chr1	24512871	24513030	+	0	NA	intron (NM_001251978, intron 1 of 4)	intron (NM_001251978, intron 1 of 4)	-1364	NM_001251980	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
124100	chr19	55650721	55651300	+	0	NA	intron (NM_001370467, intron 4 of 5)	intron (NM_001370467, intron 4 of 5)	2798	NM_001370471	29903		NM_013301	ENSG00000173581	CCDC106	HSU79303|ZNF581	coiled-coil domain containing 106	protein-coding
237053	chrX	103342971	103343330	+	0	NA	Intergenic	L2|LINE|L2	12911	NM_152278	56849		NM_152278	ENSG00000182916	TCEAL7	WEX5	transcription elongation factor A like 7	protein-coding
221086	chr8	117391871	117392050	+	0	NA	Intergenic	Intergenic	-128753	NM_001282986	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
194207	chr6	32182021	32182500	+	0	NA	exon (NM_001206936, exon 8 of 10)	exon (NM_001206936, exon 8 of 10)	1993	NR_038190	177		NM_001136	ENSG00000204305	AGER	RAGE|SCARJ1|sRAGE	advanced glycosylation end-product specific receptor	protein-coding
170298	chr3	184331371	184331530	+	0	NA	intron (NM_198244, intron 26 of 29)	intron (NM_198244, intron 26 of 29)	-4476	NM_001366134	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
168601	chr3	149224901	149225530	+	0	NA	Intergenic	Intergenic	-3386	NM_000096	1356		NM_000096	ENSG00000047457	CP	AB073614|CP-2	ceruloplasmin	protein-coding
160160	chr3	20312221	20312480	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-30118	NR_110814	101927829		NR_110814	ENSG00000231304	LOC101927829	-	uncharacterized LOC101927829	ncRNA
70284	chr14	101757151	101758230	+	0	NA	Intergenic	Intergenic	-2883	NM_001352914	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
7204	chr1	32286771	32287330	+	0	NA	TTS (NM_001330468)	TTS (NM_001330468)	-5033	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
148323	chr20	63749701	63750180	+	0	NA	intron (NM_025224, intron 4 of 4)	intron (NM_025224, intron 4 of 4)	10164	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
228016	chr9	95736451	95736550	+	0	NA	Intergenic	Intergenic	-139191	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
150412	chr21	42393001	42393600	+	0	NA	intron (NM_024022, intron 2 of 12)	intron (NM_024022, intron 2 of 12)	2752	NM_001256317	64699		NM_024022	ENSG00000160183	TMPRSS3	DFNB10|DFNB8|ECHOS1|TADG12	transmembrane serine protease 3	protein-coding
110492	chr19	2038601	2039350	+	0	NA	3' UTR (NM_199054, exon 14 of 14)	3' UTR (NM_199054, exon 14 of 14)	12269	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
192503	chr6	25004101	25004500	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	37988	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
148247	chr20	63645221	63645650	+	0	NA	intron (NR_075070, intron 1 of 4)	intron (NR_075070, intron 1 of 4)	7331	NM_001276310	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
224956	chr9	33047321	33048230	+	0	NA	intron (NM_018225, intron 11 of 11)	AluSz|SINE|Alu	22502	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
48176	chr12	7988901	7989100	+	0	NA	Intergenic	AluSz6|SINE|Alu	-43716	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
233804	chrX	1456701	1457800	+	0	NA	Intergenic	Intergenic	-3488	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
12655	chr1	109265551	109265650	+	0	NA	intron (NM_001408, intron 13 of 33)	intron (NM_001408, intron 13 of 33)	16061	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
86494	chr16	67026801	67027600	+	0	NA	Intergenic	Intergenic	-1949	NM_001755	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
87558	chr16	71961151	71961830	+	0	NA	intron (NM_181536, intron 16 of 29)	MLT1H1|LTR|ERVL-MaLR	38488	NM_181536	342372		NM_181536	ENSG00000277481	PKD1L3	-	polycystin 1 like 3, transient receptor potential channel interacting	protein-coding
73379	chr15	42551471	42551630	+	0	NA	intron (NM_001130447, intron 1 of 4)	AluSx1|SINE|Alu	2712	NM_001130447	55142		NM_018097	ENSG00000137814	HAUS2	C15orf25|CEP27|HsT17025	HAUS augmin like complex subunit 2	protein-coding
203505	chr7	615651	616850	+	0	NA	intron (NM_001164759, intron 4 of 10)	intron (NM_001164759, intron 4 of 10)	12852	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
102153	chr17	75112421	75112780	+	0	NA	intron (NM_024585, intron 2 of 2)	AluJr4|SINE|Alu	2631	NM_001304273	79637		NM_024585	ENSG00000125449	ARMC7	-	armadillo repeat containing 7	protein-coding
168865	chr3	152289271	152289850	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-9454	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
9739	chr1	53237951	53239350	+	0	NA	promoter-TSS (NR_038953)	promoter-TSS (NR_038953)	40	NR_038953	100507564		NR_038953	ENSG00000226754	MAGOH-DT	-	MAGOH divergent transcript	ncRNA
24648	chr1	246922221	246922680	+	0	NA	intron (NR_136586, intron 1 of 36)	AluJo|SINE|Alu	8908	NM_015446	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
181058	chr5	36239651	36240280	+	0	NA	intron (NM_001287341, intron 1 of 12)	intron (NM_001287341, intron 1 of 12)	1426	NM_001287340	133686		NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
61430	chr13	51826551	51827250	+	0	NA	intron (NM_001351003, intron 2 of 4)	intron (NM_001351003, intron 2 of 4)	18277	NM_001351003	283521		NM_178515	ENSG00000281106	TMEM272	LINC00282|NCRNA00282	transmembrane protein 272	protein-coding
127494	chr2	42258901	42259430	+	0	NA	intron (NM_001145076, intron 3 of 21)	AluSx1|SINE|Alu	-88934	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
31267	chr10	92216701	92216980	+	0	NA	intron (NM_014912, intron 2 of 9)	intron (NM_014912, intron 2 of 9)	26439	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
171301	chr3	195955701	195955900	+	0	NA	Intergenic	Intergenic	34479	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
163382	chr3	50492771	50493330	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	10584	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
29245	chr10	69101701	69102480	+	0	NA	intron (NM_002727, intron 2 of 2)	L2a|LINE|L2	13987	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
171034	chr3	195182221	195182480	+	0	NA	intron (NM_001308069, intron 2 of 3)	intron (NM_001308069, intron 2 of 3)	34479	NR_102711	101410543		NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
18488	chr1	161636221	161636880	+	0	NA	Intergenic	LTR8|LTR|ERV1	-4587	NM_000570	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
184988	chr5	113611851	113612630	+	0	NA	Intergenic	Intergenic	98546	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
51625	chr12	52950521	52950780	+	0	NA	promoter-TSS (NM_001256293)	promoter-TSS (NM_001256293)	-790	NR_045962	3856		NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
226403	chr9	70412101	70413000	+	0	NA	intron (NM_001206, intron 1 of 1)	CpG	2107	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
196318	chr6	43076101	43077300	+	0	NA	promoter-TSS (NM_001270398)	promoter-TSS (NM_001270398)	-114	NM_001270398	5754		NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
22299	chr1	213008271	213009030	+	0	NA	intron (NM_001300758, intron 1 of 7)	MamRTE1|LINE|RTE-BovB	6859	NM_001300755	90806		NM_144567	ENSG00000174606	ANGEL2	Ccr4d|KIAA0759L	angel homolog 2	protein-coding
222898	chr8	142789521	142789980	+	0	NA	Intergenic	Intergenic	-3211	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
112989	chr19	7879851	7880150	+	0	NA	non-coding (NR_033250, exon 1 of 1)	non-coding (NR_033250, exon 1 of 1)	232	NR_033250	388499		NR_033250		LYPLA2P2	-	LYPLA2 pseudogene 2	pseudo
134754	chr2	145260171	145260330	+	0	NA	Intergenic	L2a|LINE|L2	592283	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
79680	chr16	1253501	1253900	+	0	NA	Intergenic	L1MEc|LINE|L1	-2369	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
133234	chr2	113202251	113202850	+	0	NA	3' UTR (NM_012455, exon 17 of 17)	3' UTR (NM_012455, exon 17 of 17)	28579	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
197954	chr6	89951571	89951730	+	0	NA	exon (NM_001170794, exon 5 of 7)	exon (NM_001170794, exon 5 of 7)	57181	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
28697	chr10	60943751	60944630	+	0	NA	promoter-TSS (NM_014836)	promoter-TSS (NM_014836)	-5	NM_001350910	9886		NM_014836	ENSG00000072422	RHOBTB1	-	Rho related BTB domain containing 1	protein-coding
95162	chr17	35139771	35140130	+	0	NA	exon (NM_018096, exon 3 of 13)	exon (NM_018096, exon 3 of 13)	2301	NM_001014445	54475		NM_018096	ENSG00000073536	NLE1	NLE|Rsa4	notchless homolog 1	protein-coding
130162	chr2	75608821	75609350	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-37698	NM_014763	9801		NM_014763	ENSG00000115364	MRPL19	L15mt|L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15|bL19m	mitochondrial ribosomal protein L19	protein-coding
109740	chr19	1103321	1104200	+	0	NA	promoter-TSS (NM_002085)	promoter-TSS (NM_002085)	-234	NM_002085	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
184576	chr5	102835751	102836050	+	0	NA	intron (NM_001364582, intron 1 of 24)	intron (NM_001364582, intron 1 of 24)	27702	NM_001364582	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
63186	chr13	113740851	113741560	+	0	NA	Intergenic	Intergenic	9884	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
173966	chr4	26058651	26058750	+	0	NA	Intergenic	Intergenic	-104758	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
52911	chr12	57231301	57231850	+	0	NA	intron (NM_001166358, intron 3 of 11)	intron (NM_001166358, intron 3 of 11)	1209	NR_048562	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
106543	chr18	21598371	21598530	+	0	NA	intron (NM_052911, intron 1 of 11)	AluSx|SINE|Alu	2254	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
37926	chr11	34203521	34203780	+	0	NA	intron (NM_145804, intron 2 of 16)	MIR3|SINE|MIR	98021	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
5998	chr1	26997351	26998680	+	0	NA	intron (NM_001013642, intron 1 of 1)	intron (NM_001013642, intron 1 of 1)	4323	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
156102	chr22	40079171	40079400	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	34468	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
121767	chr19	47763201	47763600	+	0	NA	intron (NR_132382, intron 2 of 2)	AluJb|SINE|Alu	5440	NR_132382	106144593		NR_132382	ENSG00000269656	NOP53-AS1	GLTSCR2-AS1	NOP53 antisense RNA 1	ncRNA
717	chr1	1432071	1432800	+	0	NA	intron (NR_125994, intron 1 of 1)	intron (NR_125994, intron 1 of 1)	2138	NR_125996	102724312		NR_125994		LINC01770	-	long intergenic non-protein coding RNA 1770	ncRNA
203932	chr7	1537371	1537550	+	0	NA	intron (NM_002360, intron 1 of 2)	intron (NM_002360, intron 1 of 2)	-2580	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
96305	chr17	39958821	39959550	+	0	NA	Intergenic	Intergenic	-3819	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
115727	chr19	16252301	16252500	+	0	NA	Intergenic	L2c|LINE|L2	54489	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
229388	chr9	121168821	121169680	+	0	NA	intron (NM_007018, intron 38 of 43)	intron (NM_007018, intron 38 of 43)	-32233	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
73177	chr15	41491701	41492350	+	0	NA	Intergenic	Intergenic	-1849	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
123445	chr19	54133471	54134430	+	0	NA	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-3812	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
24426	chr1	243509551	243509850	+	0	NA	intron (NM_005465, intron 13 of 13)	intron (NM_005465, intron 13 of 13)	163524	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
76913	chr15	78039371	78040450	+	0	NA	intron (NM_144572, intron 3 of 12)	intron (NM_144572, intron 3 of 12)	37742	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
197604	chr6	81745021	81745280	+	0	NA	TTS (NM_017633)	TTS (NM_017633)	7531	NM_017633	55603		NM_017633	ENSG00000112773	TENT5A	C6orf37|FAM46A|OI18|XTP11	terminal nucleotidyltransferase 5A	protein-coding
144478	chr20	35615481	35617200	+	0	NA	intron (NM_003116, intron 1 of 11)	CpG	456	NM_001317931	6676		NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
136456	chr2	176996551	176996850	+	0	NA	Intergenic	Intergenic	215711	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
171807	chr4	602601	602980	+	0	NA	Intergenic	Intergenic	-22783	NM_000283	5158		NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|GMP-PDEbeta|PDEB|RP40|rd1	phosphodiesterase 6B	protein-coding
36500	chr11	6401571	6403230	+	0	NA	intron (NM_001257325, intron 6 of 12)	intron (NM_001257325, intron 6 of 12)	2291	NM_001257325	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
134653	chr2	144447551	144448000	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-71839	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
158275	chr22	50339901	50341080	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-2837	NM_001351647	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
128580	chr2	60907371	60907780	+	0	NA	intron (NM_001291746, intron 4 of 9)	AluJb|SINE|Alu	26001	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133380	chr2	118046851	118046950	+	0	NA	Intergenic	Intergenic	-32830	NM_019044	54520		NM_019044	ENSG00000125633	CCDC93	-	coiled-coil domain containing 93	protein-coding
72192	chr15	30097571	30098380	+	0	NA	Intergenic	Intergenic	-5572	NR_026858	89838		NR_026858	ENSG00000291023	ULK4P1	D-X|FAM7A1	ULK4 pseudogene 1	pseudo
212082	chr7	115208771	115208930	+	0	NA	intron (NR_126407, intron 1 of 4)	intron (NR_126407, intron 1 of 4)	22505	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
47944	chr12	6834021	6834480	+	0	NA	intron (NM_014262, intron 9 of 14)	intron (NM_014262, intron 9 of 14)	5843	NM_014262	10536		NM_014262	ENSG00000110811	P3H3	GRCB|HSU47926|LEPREL2	prolyl 3-hydroxylase 3	protein-coding
127006	chr2	36858551	36858850	+	0	NA	intron (NM_003162, intron 13 of 17)	intron (NM_003162, intron 13 of 17)	107836	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
56928	chr12	120450421	120450680	+	0	NA	intron (NM_176818, intron 2 of 3)	intron (NM_176818, intron 2 of 3)	4106	NR_033684	283459		NM_176818	ENSG00000257218	GATC	15E1.2|COXPD42	glutamyl-tRNA amidotransferase subunit C	protein-coding
140740	chr2	234463671	234465250	+	0	NA	Intergenic	Intergenic	-9865	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
71596	chr14	106551201	106551400	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	68861	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
25166	chr10	5370621	5370880	+	0	NA	intron (NM_053049, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	5784	NM_053049	114131		NM_053049	ENSG00000178473	UCN3	SCP|SPC|UCNIII	urocortin 3	protein-coding
41897	chr11	67261171	67261730	+	0	NA	Intergenic	Intergenic	-5023	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
157329	chr22	44628251	44628350	+	0	NA	Intergenic	Intergenic	-2881	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
150741	chr21	43761621	43761880	+	0	NA	3' UTR (NM_003681, exon 11 of 11)	3' UTR (NM_003681, exon 11 of 11)	14558	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
78075	chr15	90203321	90203580	+	0	NA	intron (NM_001324034, intron 1 of 13)	intron (NM_001324034, intron 1 of 13)	2120	NM_001324033								
220113	chr8	94591171	94591680	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-37907	NM_183009	25962		NM_015496	ENSG00000164944	VIRMA	KIAA1429|MSTP054|fSAP121	vir like m6A methyltransferase associated	protein-coding
197703	chr6	85673701	85673900	+	0	NA	Intergenic	Intergenic	3568	NR_002743	26799		NR_002743		SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
189356	chr5	172293371	172293750	+	0	NA	intron (NR_130933, intron 1 of 1)	LTR41|LTR|ERVL	7963	NR_130933	100288254		NM_001007542		LOC100288254	-	uncharacterized LOC100288254	ncRNA
218557	chr8	54134551	54135880	+	0	NA	promoter-TSS (NM_014175)	promoter-TSS (NM_014175)	-26	NM_014175	29088		NM_014175	ENSG00000137547	MRPL15	HSPC145|L15mt|MRP-L15|MRP-L7|RPML7|uL15m	mitochondrial ribosomal protein L15	protein-coding
74311	chr15	58314471	58315330	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	-117091	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
160019	chr3	18408351	18408650	+	0	NA	intron (NM_001322873, intron 5 of 10)	intron (NM_001322873, intron 5 of 10)	16839	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
128669	chr2	61464421	61464900	+	0	NA	intron (NM_014709, intron 1 of 79)	AluSx3|SINE|Alu	6427	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
103039	chr17	77111051	77111550	+	0	NA	intron (NM_001204410, intron 3 of 18)	MER4E1|LTR|ERV1	21883	NR_106997	102466864		NR_106997	ENSG00000284250	MIR6516	hsa-mir-6516	microRNA 6516	ncRNA
233037	chr9	137043521	137043780	+	0	NA	intron (NM_015392, intron 1 of 8)	intron (NM_015392, intron 1 of 8)	2527	NM_015392	56654		NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
12214	chr1	100399971	100401180	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	48069	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
134903	chr2	149544621	149545080	+	0	NA	Intergenic	Intergenic	-42508	NR_110240	101929231		NR_110240	ENSG00000231969	MMADHC-DT	-	MMADHC divergent transcript	ncRNA
225795	chr9	37508851	37509300	+	0	NA	Intergenic	L2b|LINE|L2	23127	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
121510	chr19	47187811	47188700	+	0	NA	intron (NM_001145713, intron 6 of 6)	AluJb|SINE|Alu	-38687	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
94422	chr17	29126471	29126830	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	13739	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
149802	chr21	34982721	34985450	+	0	NA	intron (NM_001754, intron 2 of 8)	L2|LINE|L2	55341	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
19427	chr1	174206351	174206850	+	0	NA	intron (NM_001366447, intron 1 of 20)	intron (NM_001366447, intron 1 of 20)	47080	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
75055	chr15	64162451	64164450	+	0	NA	promoter-TSS (NM_000942)	promoter-TSS (NM_000942)	-428	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
170784	chr3	188956871	188957130	+	0	NA	Intergenic	Intergenic	-9361	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
180541	chr5	14618501	14618900	+	0	NA	Intergenic	Intergenic	33682	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
1564	chr1	3518121	3518580	+	0	NA	intron (NM_001409, intron 5 of 36)	intron (NM_001409, intron 5 of 36)	42440	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
112548	chr19	6539471	6540000	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	8709	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
107851	chr18	54679651	54679830	+	0	NA	Intergenic	Intergenic	-38117	NM_001375327	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
166926	chr3	125069471	125069630	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-13553	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
9702	chr1	53090651	53091150	+	0	NA	exon (NM_001287595, exon 8 of 11)	exon (NM_001287595, exon 8 of 11)	28687	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
26452	chr10	17454101	17455330	+	0	NA	promoter-TSS (NM_001345961)	promoter-TSS (NM_001345961)	-120	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
69155	chr14	92576721	92577900	+	0	NA	intron (NM_001319987, intron 1 of 8)	intron (NM_001319987, intron 1 of 8)	1076	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
221534	chr8	124689801	124690380	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	38383	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
114328	chr19	12064551	12065700	+	0	NA	intron (NR_134326, intron 1 of 2)	CpG	394	NM_001136501	284391		NM_001136501	ENSG00000223547	ZNF844	-	zinc finger protein 844	protein-coding
59903	chr13	30773671	30774730	+	0	NA	Intergenic	Intergenic	-29006	NR_047012	100874158		NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
185421	chr5	130871321	130871730	+	0	NA	Intergenic	L1M3d|LINE|L1	293731	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
80207	chr16	2157951	2158580	+	0	NA	intron (NM_032271, intron 1 of 20)	intron (NM_032271, intron 1 of 20)	2483	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
103333	chr17	77991671	77992030	+	0	NA	Intergenic	MIRb|SINE|MIR	-12387	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
44000	chr11	94521771	94521930	+	0	NA	intron (NM_001190462, intron 2 of 3)	L2|LINE|L2	9389	NM_001190462	643037		NM_001190462	ENSG00000257057	C11orf97	LINC01171	chromosome 11 open reading frame 97	protein-coding
162015	chr3	46488711	46489430	+	0	NA	Intergenic	Intergenic	-3836	NM_001321122	4057		NM_002343	ENSG00000012223	LTF	GIG12|HEL110|HLF2|LF	lactotransferrin	protein-coding
26234	chr10	14593401	14593800	+	0	NA	intron (NM_001282695, intron 2 of 5)	AluSx1|SINE|Alu	10801	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
164884	chr3	71086721	71088230	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-22551	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
160313	chr3	27486451	27486950	+	0	NA	Intergenic	Intergenic	-2316	NM_001321103	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
129218	chr2	68232421	68232730	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	19957	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
51752	chr12	53267801	53269180	+	0	NA	intron (NM_012291, intron 1 of 30)	CpG	191	NM_012291	9700		NM_012291	ENSG00000135476	ESPL1	ESP1|SEPA	extra spindle pole bodies like 1, separase	protein-coding
177211	chr4	108432201	108432980	+	0	NA	Intergenic	MIRb|SINE|MIR	-124643	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
32859	chr10	110070601	110071750	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-62794	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
33339	chr10	116787301	116787550	+	0	NA	intron (NM_001330164, intron 2 of 12)	L1ME3F|LINE|L1	40143	NR_162126	113218494		NR_162126		MIR9851	-	microRNA 9851	ncRNA
157023	chr22	42551501	42552530	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1941	NR_104301	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
88914	chr16	87815471	87815830	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	19010	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
110985	chr19	3024501	3025850	+	0	NA	intron (NM_003260, intron 4 of 19)	intron (NM_003260, intron 4 of 19)	4105	NM_001300846	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
14263	chr1	143266471	143267380	+	0	NA	Intergenic	Intergenic	155667	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
106270	chr18	12409521	12409780	+	0	NA	intron (NM_006553, intron 1 of 6)	intron (NM_006553, intron 1 of 6)	1721	NM_001142405	10650		NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
107965	chr18	58493671	58494180	+	0	NA	intron (NM_052947, intron 12 of 12)	intron (NM_052947, intron 12 of 12)	-42773	NR_039899	100616357		NR_039899	ENSG00000207778	MIR3591	-	microRNA 3591	ncRNA
60110	chr13	37069071	37069750	+	0	NA	Intergenic	Intergenic	-9697	NM_001278481	55578		NM_017569	ENSG00000102710	SUPT20H	C13|C13orf19|FAM48A|FP757|P38IP|SPT20	SPT20 homolog, SAGA complex component	protein-coding
156474	chr22	41261051	41261680	+	0	NA	intron (NM_001278651, intron 7 of 16)	MIRc|SINE|MIR	-8315	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
100802	chr17	64052701	64053300	+	0	NA	intron (NM_001433, intron 16 of 21)	intron (NM_001433, intron 16 of 21)	-32366	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
45028	chr11	117026151	117026500	+	0	NA	intron (NM_001281748, intron 1 of 24)	Tigger3a|DNA|TcMar-Tigger	72103	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
233210	chr9	137225751	137226050	+	0	NA	exon (NM_199001, exon 2 of 2)	exon (NM_199001, exon 2 of 2)	726	NM_199001	375791		NM_199001	ENSG00000197191	CYSRT1	C9orf169	cysteine rich tail 1	protein-coding
171586	chr3	197025921	197026830	+	0	NA	intron (NM_033316, intron 3 of 6)	intron (NM_033316, intron 3 of 6)	3442	NM_033316	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
99478	chr17	50168921	50170130	+	0	NA	intron (NR_135553, intron 6 of 8)	intron (NR_135553, intron 6 of 8)	2951	NR_024193	373861		NM_194072		H1-9P	H1-9|H1.9|HILS1	H1.9 linker histone, pseudogene	pseudo
222866	chr8	142732471	142732650	+	0	NA	intron (NR_156431, intron 2 of 2)	HERVIP10FH-int|LTR|ERV1	5337	NR_156431	51337		NM_016647	ENSG00000130193	THEM6	C8orf55|DSCD75	thioesterase superfamily member 6	protein-coding
96456	chr17	40222201	40222750	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSp|SINE|Alu	3171	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
170683	chr3	187748971	187749350	+	0	NA	Intergenic	Intergenic	-3692	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
173998	chr4	26318871	26320300	+	0	NA	promoter-TSS (NM_001374400)	promoter-TSS (NM_001374400)	-161	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
64769	chr14	34627221	34627730	+	0	NA	intron (NR_159357, intron 2 of 12)	AluSq2|SINE|Alu	2673	NR_159358	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
93798	chr17	20468901	20469650	+	0	NA	Intergenic	L1ME3|LINE|L1	-1740	NM_001042685	284194		NM_001042685	ENSG00000170298	LGALS9B	-	galectin 9B	protein-coding
17389	chr1	156609021	156609350	+	0	NA	Intergenic	Intergenic	-7698	NM_015590	54865		NM_015590	ENSG00000160818	GPATCH4	GPATC4	G-patch domain containing 4 (gene/pseudogene)	protein-coding
97253	chr17	43000171	43000330	+	0	NA	intron (NM_001349921, intron 3 of 4)	intron (NM_001349921, intron 3 of 4)	1831	NM_001349922	6155		NM_000988	ENSG00000131469	RPL27	DBA16|L27|eL27	ribosomal protein L27	protein-coding
220736	chr8	102113171	102113330	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	11084	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
64538	chr14	24439951	24441000	+	0	NA	exon (NM_001290293, exon 5 of 5)	exon (NM_001290293, exon 5 of 5)	2326	NM_020195	56948		NM_020195	ENSG00000100445	SDR39U1	C14orf124|HCDI	short chain dehydrogenase/reductase family 39U member 1	protein-coding
178516	chr4	150886351	150886450	+	0	NA	intron (NM_001367550, intron 17 of 56)	L1MEf|LINE|L1	128867	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
165291	chr3	79018851	79019580	+	0	NA	5' UTR (NM_001145845, exon 1 of 29)	5' UTR (NM_001145845, exon 1 of 29)	244	NM_133631	6091		NM_002941	ENSG00000169855	ROBO1	CPHD8|DUTT1|NORS|NYS8|SAX3	roundabout guidance receptor 1	protein-coding
27605	chr10	32890721	32890980	+	0	NA	Intergenic	Intergenic	10622	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
92050	chr17	7501451	7501630	+	0	NA	exon (NM_000937, exon 14 of 30)	exon (NM_000937, exon 14 of 30)	17174	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
153483	chr22	26364421	26364750	+	0	NA	intron (NM_001184777, intron 12 of 14)	intron (NM_001184777, intron 12 of 14)	-64675	NM_020437	57168		NM_020437	ENSG00000128203	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
40900	chr11	65136821	65137280	+	0	NA	Intergenic	AluY|SINE|Alu	-2531	NM_032431	84447		NM_032431	ENSG00000162298	SYVN1	DER3|HRD1	synoviolin 1	protein-coding
178831	chr4	153575871	153576380	+	0	NA	intron (NM_015196, intron 7 of 34)	AluY|SINE|Alu	-64043	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
56364	chr12	113130471	113130830	+	0	NA	intron (NM_001301202, intron 2 of 20)	intron (NM_001301202, intron 2 of 20)	4949	NM_001301202	8437		NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
154776	chr22	36528521	36530780	+	0	NA	promoter-TSS (NM_003753)	promoter-TSS (NM_003753)	-484	NR_156418	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
169188	chr3	156706701	156707100	+	0	NA	TTS (NM_015508)	TTS (NM_015508)	30236	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
234302	chrX	13699351	13699850	+	0	NA	intron (NM_001195328, intron 1 of 1)	L2c|LINE|L2	10472	NM_004251	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
12722	chr1	109530851	109531430	+	0	NA	Intergenic	Intergenic	-8732	NM_031936	83873		NM_031936	ENSG00000156097	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
101804	chr17	73310521	73311480	+	0	NA	intron (NM_012121, intron 1 of 1)	CpG	1001	NM_012121	23580		NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein 4	protein-coding
35758	chr11	2145971	2146130	+	0	NA	TTS (NM_001042376)	TTS (NM_001042376)	3553	NM_001007139	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
23598	chr1	230029301	230029500	+	0	NA	Intergenic	MER61A|LTR|ERV1	26683	NR_135116	101927532		NR_135116	ENSG00000228058	LINC01736	-	long intergenic non-protein coding RNA 1736	ncRNA
86267	chr16	58499001	58499200	+	0	NA	intron (NM_022910, intron 3 of 15)	intron (NM_022910, intron 3 of 15)	-1043	NR_040072	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
159352	chr3	13236001	13236200	+	0	NA	intron (NM_001376938, intron 1 of 15)	intron (NM_001376938, intron 1 of 15)	47157	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
187790	chr5	146207871	146208030	+	0	NA	intron (NM_018989, intron 1 of 20)	intron (NM_018989, intron 1 of 20)	4345	NM_018989	54439		NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18|ZC3H20	RNA binding motif protein 27	protein-coding
235888	chrX	52261481	52262300	+	0	NA	Intergenic	CpG	71268	NR_003711	100124541		NR_003711	ENSG00000221475	SNORA11D	-	small nucleolar RNA, H/ACA box 11D	snoRNA
32696	chr10	103984551	103984850	+	0	NA	intron (NM_014720, intron 1 of 18)	AluSz6|SINE|Alu	17560	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
102615	chr17	75968371	75968730	+	0	NA	intron (NM_004035, intron 2 of 13)	AluYh3|SINE|Alu	10616	NM_004035	51		NM_004035	ENSG00000161533	ACOX1	ACOX|AOX|MITCH|PALMCOX|SCOX	acyl-CoA oxidase 1	protein-coding
238803	chrX	154395171	154395330	+	0	NA	Intergenic	AluSp|SINE|Alu	-2815	NM_001303625	6134		NM_006013	ENSG00000147403	RPL10	AUTSX5|DXS648|DXS648E|L10|MRXS35|NOV|QM|uL16	ribosomal protein L10	protein-coding
143324	chr20	25484951	25485250	+	0	NA	intron (NM_001318226, intron 13 of 22)	L1MC4|LINE|L1	77417	NR_134574	9837		NM_021067	ENSG00000101003	GINS1	IMD55|PSF1	GINS complex subunit 1	protein-coding
154465	chr22	35543651	35543750	+	0	NA	intron (NM_014310, intron 1 of 2)	intron (NM_014310, intron 1 of 2)	2869	NM_014310	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
52152	chr12	54272121	54272580	+	0	NA	intron (NR_157844, intron 1 of 1)	intron (NR_157844, intron 1 of 1)	7772	NM_012117	23468		NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A|HP1alpha	chromobox 5	protein-coding
161930	chr3	46087971	46088130	+	0	NA	Intergenic	Intergenic	-2206	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
144795	chr20	36642051	36642980	+	0	NA	intron (NM_175077, intron 1 of 7)	AluJo|SINE|Alu	3681	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
155063	chr22	37534051	37534230	+	0	NA	Intergenic	L1MB7|LINE|L1	-14725	NM_014550	29775		NM_014550	ENSG00000100065	CARD10	BIMP1|CARMA3|IMD89	caspase recruitment domain family member 10	protein-coding
102488	chr17	75748901	75749100	+	0	NA	exon (NM_001005731, exon 27 of 39)	exon (NM_001005731, exon 27 of 39)	16192	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
10272	chr1	64686721	64687080	+	0	NA	intron (NM_001293274, intron 25 of 25)	intron (NM_001293274, intron 25 of 25)	-58073	NM_001366165	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
51556	chr12	52559101	52560750	+	0	NA	Intergenic	AluSz|SINE|Alu	-6780	NM_033448	112802		NM_033448	ENSG00000139648	KRT71	HYPT13|K6IRS1|KRT6IRS|KRT6IRS1	keratin 71	protein-coding
107300	chr18	44773801	44774200	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	73125	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
185233	chr5	122902151	122902580	+	0	NA	intron (NR_146145, intron 1 of 7)	LTR32|LTR|ERVL	56752	NM_014035	28966		NM_014035	ENSG00000064652	SNX24	PRO1284|SBBI31	sorting nexin 24	protein-coding
74619	chr15	60660601	60660880	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	-20829	NR_120318	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
62421	chr13	99302171	99302330	+	0	NA	intron (NM_004951, intron 1 of 1)	intron (NM_004951, intron 1 of 1)	5149	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
73869	chr15	50345721	50345980	+	0	NA	intron (NM_016654, intron 1 of 8)	AluY|SINE|Alu	-8324	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
217534	chr8	29262321	29263880	+	0	NA	promoter-TSS (NM_015254)	promoter-TSS (NM_015254)	-30	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
61932	chr13	78597351	78597450	+	0	NA	TTS (NM_006237)	TTS (NM_006237)	1278	NR_158457	780529		NR_158457	ENSG00000271776	LOC780529	-	uncharacterized LOC780529	ncRNA
8576	chr1	41371701	41372580	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	3529	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
233128	chr9	137146771	137147130	+	0	NA	intron (NM_007327, intron 3 of 19)	intron (NM_007327, intron 3 of 19)	7796	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
187461	chr5	142124771	142124930	+	0	NA	intron (NM_030571, intron 1 of 7)	AluYi6|SINE|Alu	16071	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
199227	chr6	111814851	111815150	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-55083	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
129120	chr2	65231771	65233400	+	0	NA	intron (NM_005722, intron 1 of 8)	intron (NM_005722, intron 1 of 8)	4754	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
24847	chr10	448671	449850	+	0	NA	intron (NM_014974, intron 3 of 36)	intron (NM_014974, intron 3 of 36)	-179304	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
186106	chr5	134128101	134128680	+	0	NA	intron (NM_001366502, intron 1 of 7)	intron (NM_001366502, intron 1 of 7)	4772	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
163701	chr3	52270891	52272080	+	0	NA	intron (NM_025222, intron 1 of 8)	intron (NM_025222, intron 1 of 8)	-3124	NR_029660	406890		NR_029660	ENSG00000199150	MIRLET7G	LET7G|MIRNLET7G|hsa-let-7g|let-7g	microRNA let-7g	ncRNA
198937	chr6	110475401	110475600	+	0	NA	intron (NM_033125, intron 1 of 7)	intron (NM_033125, intron 1 of 7)	1113	NM_033125	85413		NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
171782	chr4	231001	231350	+	0	NA	intron (NR_027481, intron 1 of 1)	intron (NR_027481, intron 1 of 1)	18575	NR_027481	642280		NM_001039758	ENSG00000290382	ZNF876P	-	zinc finger protein 876, pseudogene	pseudo
191378	chr6	7389331	7390880	+	0	NA	promoter-TSS (NM_205864)	promoter-TSS (NM_205864)	276	NM_001348194	83732		NM_031480	ENSG00000124784	RIOK1	AD034|RIO1|RRP10|bA288G3.1	RIO kinase 1	protein-coding
148268	chr20	63686471	63687530	+	0	NA	intron (NM_032957, intron 16 of 34)	intron (NM_032957, intron 16 of 34)	-9652	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
46960	chr11	134654521	134655000	+	0	NA	Intergenic	Intergenic	-81185	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
229626	chr9	124018701	124019130	+	0	NA	intron (NM_004789, intron 3 of 4)	intron (NM_004789, intron 3 of 4)	7147	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
31494	chr10	96653351	96654480	+	0	NA	intron (NM_152309, intron 3 of 16)	MER5C|DNA|hAT-Charlie	66599	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
50304	chr12	46450321	46450580	+	0	NA	intron (NR_125381, intron 2 of 2)	intron (NR_125381, intron 2 of 2)	66343	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
199343	chr6	114011701	114011900	+	0	NA	intron (NR_125845, intron 4 of 9)	LTR7B|LTR|ERV1	-40652	NR_033441	3066		NM_001527	ENSG00000196591	HDAC2	HD2|KDAC2|RPD3|YAF1	histone deacetylase 2	protein-coding
105925	chr18	3473101	3473500	+	0	NA	intron (NR_110429, intron 2 of 2)	Tigger1|DNA|TcMar-Tigger	7050	NR_110429	100505592		NR_110428	ENSG00000266835	GAPLINC	LINC01540	gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA	ncRNA
113102	chr19	8285171	8285330	+	0	NA	Intergenic	Intergenic	23108	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
12526	chr1	108533721	108534000	+	0	NA	Intergenic	LTR78|LTR|ERV1	-26240	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
152338	chr22	20424501	20424750	+	0	NA	TTS (NM_153334)	TTS (NM_153334)	13200	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
220532	chr8	100689271	100689730	+	0	NA	Intergenic	AluSx1|SINE|Alu	13524	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
178712	chr4	152696701	152697900	+	0	NA	Intergenic	Intergenic	-17303	NM_152680	201799		NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding
72004	chr15	25863101	25863980	+	0	NA	promoter-TSS (NM_024490)	promoter-TSS (NM_024490)	-338	NM_024490	57194		NM_024490	ENSG00000206190	ATP10A	ATP10C|ATPVA|ATPVC	ATPase phospholipid transporting 10A (putative)	protein-coding
131505	chr2	96542351	96543400	+	0	NA	intron (NM_001319092, intron 1 of 6)	intron (NM_001319092, intron 1 of 6)	4996	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
66418	chr14	61518221	61519130	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	51519	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
225478	chr9	35610851	35611830	+	0	NA	intron (NM_001782, intron 7 of 8)	intron (NM_001782, intron 7 of 8)	3246	NR_039813	100616214		NR_039813	ENSG00000263892	MIR4667	mir-4667	microRNA 4667	ncRNA
11122	chr1	86429821	86430100	+	0	NA	intron (NM_006536, intron 3 of 13)	intron (NM_006536, intron 3 of 13)	5789	NM_006536	9635		NM_006536	ENSG00000137975	CLCA2	CACC|CACC3|CLCRG2|CaCC-3	chloride channel accessory 2	protein-coding
46995	chr12	103371	103980	+	0	NA	intron (NM_015232, intron 2 of 12).2	intron (NM_015232, intron 2 of 12).2	26299	NM_015232	440073		NM_015232	ENSG00000120645	IQSEC3	-	IQ motif and Sec7 domain ArfGEF 3	protein-coding
93433	chr17	18563151	18564310	+	0	NA	intron (NR_036647, intron 12 of 16)	L1PA16|LINE|L1	-36884	NM_024974	80039		NM_024974	ENSG00000273018	FAM106A	-	family with sequence similarity 106 member A	ncRNA
232785	chr9	136695871	136696030	+	0	NA	Intergenic	Intergenic	-8493	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
154572	chr22	36263501	36264100	+	0	NA	intron (NM_145343, intron 6 of 6)	MER31B|LTR|ERV1	10667	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
113474	chr19	9938551	9938650	+	0	NA	Intergenic	MER41E|LTR|ERV1	-2085	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
191901	chr6	15390071	15390580	+	0	NA	intron (NM_001267040, intron 2 of 17)	intron (NM_001267040, intron 2 of 17)	141470	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
148296	chr20	63720851	63721150	+	0	NA	intron (NM_181485, intron 2 of 6)	L1M4|LINE|L1	12961	NM_181485	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
199049	chr6	111481001	111481300	+	0	NA	intron (NM_001286432, intron 2 of 33)	intron (NM_001286432, intron 2 of 33)	2068	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
71981	chr15	25783401	25783880	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	65185	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
39007	chr11	47724321	47724580	+	0	NA	intron (NM_015308, intron 13 of 16)	intron (NM_015308, intron 13 of 16)	-9081	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
149619	chr21	33389671	33390230	+	0	NA	Intergenic	Intergenic	-12946	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
68064	chr14	75258771	75260550	+	0	NA	Intergenic	Intergenic	-19168	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
75989	chr15	70557621	70558050	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	28771	NR_135691	101929151		NR_135691	ENSG00000280639	LINC02204	-	long intergenic non-protein coding RNA 2204	ncRNA
236290	chrX	66638721	66639380	+	0	NA	promoter-TSS (NM_001324199)	promoter-TSS (NM_001324199)	28	NM_021783	60401		NM_021783	ENSG00000131080	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
90365	chr17	1234951	1235250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5378	NM_001322841	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
17681	chr1	157748501	157748730	+	0	NA	exon (NM_030764, exon 10 of 12)	exon (NM_030764, exon 10 of 12)	28517	NR_125358	79368		NM_030764	ENSG00000132704	FCRL2	CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C	Fc receptor like 2	protein-coding
91836	chr17	7195501	7196300	+	0	NA	intron (NR_135527, intron 13 of 20)	MamRep38|DNA|hAT	9287	NM_001321077	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
48632	chr12	10389271	10389430	+	0	NA	intron (NM_001199805, intron 6 of 12)	(CAT)n|Simple_repeat|Simple_repeat	691	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
176918	chr4	102812071	102812300	+	0	NA	intron (NM_181893, intron 1 of 6)	FAM|SINE|Alu	13675	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
84195	chr16	29856751	29857050	+	0	NA	Intergenic	Intergenic	6326	NM_006319	10423		NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
184772	chr5	110625551	110625650	+	0	NA	intron (NM_001039763, intron 6 of 13)	intron (NM_001039763, intron 6 of 13)	101071	NM_001039763	642987		NM_001039763	ENSG00000186952	TMEM232	-	transmembrane protein 232	protein-coding
75238	chr15	64883041	64883520	+	0	NA	Intergenic	Intergenic	-28622	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
80719	chr16	3095671	3096450	+	0	NA	intron (NM_032805, intron 1 of 5)	intron (NM_032805, intron 1 of 5)	3234	NM_001282415	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
132111	chr2	101474901	101475430	+	0	NA	promoter-TSS (NM_001145664)	promoter-TSS (NM_001145664)	-53	NM_001367509	731220		NM_207403	ENSG00000196460	RFX8	-	regulatory factor X8	protein-coding
199192	chr6	111776621	111777030	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-16908	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
64947	chr14	35824371	35825480	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-1413	NM_032352	84312		NM_032352	ENSG00000100916	BRMS1L	BRMS1|p40	BRMS1 like transcriptional repressor	protein-coding
191651	chr6	13382701	13382900	+	0	NA	intron (NM_018988, intron 1 of 1)	L1PA10|LINE|L1	25337	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
116483	chr19	18108621	18108880	+	0	NA	intron (NM_015016, intron 2 of 26)	MIR3|SINE|MIR	-9934	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
38941	chr11	47511001	47511200	+	0	NA	intron (NM_001376409, intron 1 of 15)	AluJb|SINE|Alu	12731	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
90390	chr17	1288751	1289900	+	0	NA	intron (NM_172367, intron 1 of 2)	intron (NM_172367, intron 1 of 2)	9663	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
100787	chr17	64017351	64017700	+	0	NA	intron (NM_001099788, intron 1 of 5)	L1M5|LINE|L1	3108	NM_001099789	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
147417	chr20	58881071	58881400	+	0	NA	intron (NR_126334, intron 3 of 4)	intron (NR_126334, intron 3 of 4)	-7178	NR_132273	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
9933	chr1	54484221	54484600	+	0	NA	Intergenic	L2c|LINE|L2	-63818	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
230789	chr9	128945251	128945980	+	0	NA	TTS (NM_014908)	TTS (NM_014908)	1988	NM_014908	22845		NM_014908	ENSG00000175283	DOLK	CDG1M|DK|DK1|SEC59|TMEM15	dolichol kinase	protein-coding
84160	chr16	29786371	29787030	+	0	NA	Intergenic	AluY|SINE|Alu	-4051	NM_001256269	3835		NM_007317	ENSG00000079616	KIF22	A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2	kinesin family member 22	protein-coding
117767	chr19	29694501	29695530	+	0	NA	Intergenic	Intergenic	20041	NM_001282929	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
10625	chr1	69569671	69570030	+	0	NA	intron (NM_001366842, intron 1 of 7)	intron (NM_001366842, intron 1 of 7)	509	NM_001366842	57554		NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
721	chr1	1435351	1436630	+	0	NA	intron (NM_199121, intron 1 of 2)	CpG	300	NM_022834	64856		NM_022834	ENSG00000179403	VWA1	HMNMYO|HMNR7|WARP	von Willebrand factor A domain containing 1	protein-coding
84408	chr16	30349551	30349850	+	0	NA	Intergenic	L1MB7|LINE|L1	5234	NM_001243646	10421		NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
43942	chr11	93542051	93542700	+	0	NA	intron (NM_020179, intron 1 of 2)	intron (NM_020179, intron 1 of 2)	1016	NM_020179	56935		NM_020179	ENSG00000166002	SMCO4	C11orf75|FN5	single-pass membrane protein with coiled-coil domains 4	protein-coding
114686	chr19	13108701	13108900	+	0	NA	intron (NM_001136035, intron 12 of 16)	AluSz|SINE|Alu	-5942	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
71792	chr15	21717451	21718600	+	0	NA	non-coding (NR_135694, exon 2 of 2)	non-coding (NR_135694, exon 2 of 2)	282	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
111006	chr19	3046771	3047290	+	0	NA	intron (NM_001144761, intron 1 of 19)	intron (NM_001144761, intron 1 of 19)	605	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
230617	chr9	128628421	128628880	+	0	NA	intron (NM_001375310, intron 52 of 57)	intron (NM_001375310, intron 52 of 57)	28200	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
214180	chr7	145997351	145997450	+	0	NA	Intergenic	Intergenic	-776871	NM_014141	26047		NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein 2	protein-coding
100619	chr17	63552971	63553130	+	0	NA	intron (NR_073585, intron 1 of 7)	Charlie4a|DNA|hAT-Charlie	2573	NR_073585	10238		NM_005828	ENSG00000136485	DCAF7	AN11|HAN11|SWAN-1|WDR68	DDB1 and CUL4 associated factor 7	protein-coding
30595	chr10	80152751	80153050	+	0	NA	3' UTR (NM_001157, exon 15 of 15)	3' UTR (NM_001157, exon 15 of 15)	20170	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
208163	chr7	64639271	64639450	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-26723	NM_001282360	51427		NM_016220	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
1134	chr1	2146021	2147350	+	0	NA	intron (NM_001350805, intron 4 of 14)	intron (NM_001350805, intron 4 of 14)	37190	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
163639	chr3	52071801	52072400	+	0	NA	Intergenic	Intergenic	-6988	NR_027331	100128378		NM_001123039		LINC00696	C3orf74	long intergenic non-protein coding RNA 696	ncRNA
147591	chr20	61981901	61982980	+	0	NA	intron (NM_003185, intron 14 of 14)	intron (NM_003185, intron 14 of 14)	-28778	NR_031658	100302168		NR_031658	ENSG00000284193	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
223205	chr8	143585251	143585650	+	0	NA	intron (NM_001330646, intron 2 of 6)	intron (NM_001330646, intron 2 of 6)	-7120	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
21832	chr1	207342251	207342800	+	0	NA	intron (NM_001114752, intron 10 of 10)	L1MA4A|LINE|L1	20847	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
85420	chr16	50326671	50327730	+	0	NA	intron (NM_013263, intron 9 of 16)	intron (NM_013263, intron 9 of 16)	34584	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
55060	chr12	96473171	96473780	+	0	NA	Intergenic	Intergenic	-16102	NM_001306084	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
126821	chr2	30541871	30542030	+	0	NA	intron (NM_001304445, intron 5 of 7)	L1M4|LINE|L1	94704	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
131164	chr2	91571101	91571380	+	0	NA	Intergenic	TAR1|Satellite|telo	88709	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
53666	chr12	68417571	68417730	+	0	NA	Intergenic	Intergenic	33834	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
57340	chr12	121747871	121748350	+	0	NA	intron (NM_001080825, intron 2 of 11)	intron (NM_001080825, intron 2 of 11)	35358	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
60047	chr13	32791401	32792200	+	0	NA	Intergenic	Intergenic	119852	NR_047020	100874167		NR_047020		LINC00423	-	long intergenic non-protein coding RNA 423	ncRNA
78820	chr15	99683021	99683480	+	0	NA	intron (NM_001130927, intron 5 of 9)	intron (NM_001130927, intron 5 of 9)	50187	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
54816	chr12	94682851	94683350	+	0	NA	Intergenic	AluY|SINE|Alu	-32543	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
168528	chr3	143976371	143976630	+	0	NA	intron (NM_001134470, intron 1 of 2)	intron (NM_001134470, intron 1 of 2)	3419	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
70243	chr14	101458371	101458530	+	0	NA	Intergenic	CpG	16374	NR_135240	100507277		NR_135240	ENSG00000259082	LINC02314	-	long intergenic non-protein coding RNA 2314	ncRNA
157590	chr22	46000921	46001580	+	0	NA	Intergenic	Intergenic	-5366	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
117510	chr19	20040371	20040530	+	0	NA	promoter-TSS (NM_033196)	promoter-TSS (NM_033196)	-945	NM_033196	91120		NM_033196	ENSG00000197124	ZNF682	BC39498_3	zinc finger protein 682	protein-coding
207011	chr7	38361051	38361550	+	0	NA	intron (NR_040085, intron 3 of 3)	AluSz|SINE|Alu	19723	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
193730	chr6	31243471	31243930	+	0	NA	Intergenic	MLT2C2|LTR|ERVL	28392	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
38778	chr11	47183951	47184400	+	0	NA	intron (NM_016223, intron 1 of 10)	intron (NM_016223, intron 1 of 10)	1706	NM_001184975	29763		NM_016223	ENSG00000165912	PACSIN3	SDPIII	protein kinase C and casein kinase substrate in neurons 3	protein-coding
124157	chr19	56103971	56104130	+	0	NA	intron (NM_001351682, intron 1 of 1)	CpG	17245	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
30560	chr10	79713001	79713730	+	0	NA	TTS (NM_001278495)	TTS (NM_001278495)	10138	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
149787	chr21	34923271	34923430	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-34651	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
19846	chr1	182889701	182890430	+	0	NA	Intergenic	Intergenic	-50474	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
194250	chr6	32526051	32526150	+	0	NA	intron (NM_002125, intron 1 of 5)	intron (NM_002125, intron 1 of 5)	4187	NM_002125	3127		NM_002125	ENSG00000198502	HLA-DRB5	DRB5|HLA-DRB5*	major histocompatibility complex, class II, DR beta 5	protein-coding
155369	chr22	38293101	38293730	+	0	NA	intron (NM_152221, intron 9 of 10)	intron (NM_152221, intron 9 of 10)	-20405	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
33631	chr10	119657571	119657930	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	6370	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
175175	chr4	56048751	56049780	+	0	NA	Intergenic	CpG	100320	NM_025009	9662		NM_014645	ENSG00000174799	CEP135	CEP4|KIAA0635|MCPH8	centrosomal protein 135	protein-coding
55095	chr12	98399121	98400250	+	0	NA	Intergenic	Intergenic	57460	NR_033801	121456		NR_033801	ENSG00000293147	SLC9A7P1	-	solute carrier family 9 member 7 pseudogene 1	pseudo
218500	chr8	52713901	52715250	+	0	NA	promoter-TSS (NM_014781)	promoter-TSS (NM_014781)	-109	NM_001083617	9821		NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
122002	chr19	48584221	48584830	+	0	NA	intron (NM_177973, intron 2 of 6)	LTR41C|LTR|ERVL	8789	NM_004605	6820		NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
108001	chr18	58692071	58692430	+	0	NA	intron (NM_173844, intron 2 of 15)	intron (NM_173844, intron 2 of 15)	-20377	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
169453	chr3	167737251	167737350	+	0	NA	intron (NM_005025, intron 1 of 8)	intron (NM_005025, intron 1 of 8)	1577	NM_005025	5274		NM_005025	ENSG00000163536	SERPINI1	HNS-S1|HNS-S2|PI12|neuroserpin	serpin family I member 1	protein-coding
152461	chr22	20705321	20705850	+	0	NA	TTS (NR_026815)	TTS (NR_026815)	4471	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
200066	chr6	130035501	130035700	+	0	NA	intron (NM_001007102, intron 2 of 21)	intron (NM_001007102, intron 2 of 21)	15956	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
217086	chr8	23764371	23764600	+	0	NA	Intergenic	Intergenic	-57729	NM_001136271	137814		NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
8826	chr1	42961471	42961830	+	0	NA	intron (NR_033967, intron 1 of 3)	L2c|LINE|L2	2601	NR_033967	440584		NR_033967	ENSG00000227533	SLC2A1-DT	SLC2A1-AS1	SLC2A1 divergent transcript	ncRNA
142791	chr20	13302701	13302980	+	0	NA	Intergenic	Intergenic	-63153	NR_040043	100505536		NR_040043		ISM1-AS1	-	ISM1 antisense RNA 1	ncRNA
126327	chr2	27359351	27359650	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-2466	NM_001035521	2976		NM_001521	ENSG00000115207	GTF3C2	TF3C-beta|TFIIIC-BETA|TFIIIC110	general transcription factor IIIC subunit 2	protein-coding
83048	chr16	22326971	22327500	+	0	NA	intron (NM_018119, intron 18 of 20).2	intron (NM_018119, intron 18 of 20).2	29826	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
231333	chr9	130171201	130171400	+	0	NA	Intergenic	Intergenic	-1104	NM_014286	23413		NM_014286	ENSG00000107130	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
126243	chr2	27074271	27074430	+	0	NA	Intergenic	Intergenic	-2696	NM_001134693	100128731		NM_001134693	ENSG00000228474	OST4	-	oligosaccharyltransferase complex subunit 4, non-catalytic	protein-coding
108334	chr18	63975021	63975380	+	0	NA	intron (NM_001366198, intron 1 of 6)	intron (NM_001366198, intron 1 of 6)	5119	NM_001348368	5271		NM_002640	ENSG00000166401	SERPINB8	C18orf53|CAP2|PI-8|PI8|PSS5	serpin family B member 8	protein-coding
153158	chr22	23782301	23782730	+	0	NA	intron (NR_133013, intron 7 of 7).2	intron (NR_133013, intron 7 of 7).2	-4451	NM_003073	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
47983	chr12	6902721	6902980	+	0	NA	Intergenic	MIR|SINE|MIR	-1972	NM_006992	10233		NM_006992	ENSG00000010626	LRRC23	LRPB7	leucine rich repeat containing 23	protein-coding
56874	chr12	120290301	120292500	+	0	NA	promoter-TSS (NM_001385733)	promoter-TSS (NM_001385733)	-380	NM_001385735	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
104611	chr17	81418101	81418300	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-17422	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
239322	chrY	18176251	18176350	+	0	NA	Intergenic	Intergenic	40851	NM_001002906								
112710	chr19	7183051	7183750	+	0	NA	intron (NM_001079817, intron 3 of 20)	intron (NM_001079817, intron 3 of 20)	111014	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
40402	chr11	64056751	64057050	+	0	NA	intron (NM_001384466, intron 1 of 2)	intron (NM_001384466, intron 1 of 2)	20218	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
152790	chr22	21821851	21822500	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSx1|SINE|Alu	45470	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
142460	chr20	4032771	4033130	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-17392	NM_001134337	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
170032	chr3	181709601	181710100	+	0	NA	intron (NR_075089, intron 3 of 3)	intron (NR_075089, intron 3 of 3)	-2075	NM_003106	6657		NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box transcription factor 2	protein-coding
38258	chr11	36564421	36564750	+	0	NA	intron (NM_001377277, intron 4 of 4)	intron (NM_001377277, intron 4 of 4)	-3422	NM_000448	5896		NM_000448	ENSG00000166349	RAG1	RAG-1|RNF74	recombination activating 1	protein-coding
206638	chr7	36128401	36128600	+	0	NA	Intergenic	MIRb|SINE|MIR	-24754	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
114263	chr19	11560521	11561280	+	0	NA	Intergenic	L1ME3G|LINE|L1	-1664	NM_032377	84337		NM_032377	ENSG00000130165	ELOF1	ELF1	elongation factor 1	protein-coding
58453	chr12	132083521	132085350	+	0	NA	intron (NR_003290, intron 1 of 9)	CpG	152	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
26950	chr10	26544671	26544830	+	0	NA	intron (NM_019043, intron 11 of 14)	intron (NM_019043, intron 11 of 14)	34557	NR_134472	101929117		NR_134472		LINC03028	-	long intergenic non-protein coding RNA 3028	ncRNA
62509	chr13	99464501	99465230	+	0	NA	Intergenic	Intergenic	34441	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
222909	chr8	142840101	142840300	+	0	NA	intron (NM_002066, intron 1 of 3)	intron (NM_002066, intron 1 of 3)	5399	NM_002066	2765		NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
15604	chr1	150607571	150607730	+	0	NA	Intergenic	U4|snRNA|snRNA	21483	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
216395	chr8	17930671	17931000	+	0	NA	intron (NR_148032, intron 2 of 38)	AluY|SINE|Alu	7847	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
187338	chr5	141664871	141665630	+	0	NA	intron (NM_022481, intron 18 of 32)	intron (NM_022481, intron 18 of 32)	-13832	NM_033449	89848		NM_033449	ENSG00000197948	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
171850	chr4	709301	710630	+	0	NA	intron (NM_001317836, intron 1 of 11)	intron (NM_001317836, intron 1 of 11)	4133	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
158484	chr22	50806501	50807300	+	0	NA	Intergenic	TAR1|Satellite|telo	23171	NR_026982	284942		NM_203302	ENSG00000291064	RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
144822	chr20	36808301	36808950	+	0	NA	exon (NM_199181, exon 8 of 15)	exon (NM_199181, exon 8 of 15)	-34862	NM_001145318	79980		NM_024918	ENSG00000149636	DSN1	C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3	DSN1 component of MIS12 kinetochore complex	protein-coding
234781	chrX	23952971	23953860	+	0	NA	Intergenic	LTR16C|LTR|ERVL	45409	NM_001169574	254158		NM_152761	ENSG00000165182	CXorf58	-	chromosome X open reading frame 58	protein-coding
213426	chr7	138146771	138147330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	23292	NR_039678	100616226		NR_039678	ENSG00000284028	MIR4468	-	microRNA 4468	ncRNA
108280	chr18	63304801	63305450	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	14644	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
82087	chr16	14301701	14302500	+	0	NA	promoter-TSS (NR_132984)	promoter-TSS (NR_132984)	-188	NR_132983	100129781		NR_132983	ENSG00000262454	MIR193BHG	HypERlnc|lincNORS	MIR193b-365a host gene	ncRNA
68998	chr14	91488551	91489280	+	0	NA	intron (NR_158976, intron 3 of 16)	AluY|SINE|Alu	21395	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
73520	chr15	43791751	43793930	+	0	NA	TTS (NR_031695)	TTS (NR_031695)	520	NM_001018108	10169		NM_005770	ENSG00000140264	SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
48415	chr12	9669521	9670000	+	0	NA	promoter-TSS (NM_001197319)	promoter-TSS (NM_001197319)	47	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
112567	chr19	6601021	6601980	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	-10350	NM_001252	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
222659	chr8	141179721	141180380	+	0	NA	intron (NM_014957, intron 16 of 22)	intron (NM_014957, intron 16 of 22)	48524	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
101210	chr17	65558001	65558330	+	0	NA	exon (NM_001363813, exon 2 of 10)	exon (NM_001363813, exon 2 of 10)	3483	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
193366	chr6	30326501	30328300	+	0	NA	promoter-TSS (NR_024052)	promoter-TSS (NR_024052)	169	NM_172016	56658		NM_021253	ENSG00000204599	TRIM39	RNF23|TFP|TRIM39B	tripartite motif containing 39	protein-coding
111494	chr19	3967701	3968250	+	0	NA	intron (NM_001348, intron 2 of 8)	MER33|DNA|hAT-Charlie	3124	NM_001348	1613		NM_001348	ENSG00000167657	DAPK3	DLK|ZIP|ZIPK	death associated protein kinase 3	protein-coding
151414	chr21	46060571	46060730	+	0	NA	Intergenic	Intergenic	-37462	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
123835	chr19	55225971	55226380	+	0	NA	TTS (NM_001372013)	TTS (NM_001372013)	2588	NM_001372013	255043		NM_173804	ENSG00000180089	TMEM86B	-	transmembrane protein 86B	protein-coding
119308	chr19	39845101	39845500	+	0	NA	intron (NM_001436, intron 1 of 8)	intron (NM_001436, intron 1 of 8)	1079	NM_001436	2091		NM_001436	ENSG00000105202	FBL	FIB|FLRN|Nop1|RNU3IP1	fibrillarin	protein-coding
177354	chr4	110195571	110196090	+	0	NA	intron (NM_024090, intron 1 of 3)	intron (NM_024090, intron 1 of 3)	2785	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
73671	chr15	44732771	44733080	+	0	NA	TTS (NR_125376)	TTS (NR_125376)	-3603	NM_001301144	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
173809	chr4	17812751	17813050	+	0	NA	intron (NR_073124, intron 2 of 19)	intron (NR_073124, intron 2 of 19)	1921	NM_022346	64151		NM_022346	ENSG00000109805	NCAPG	CAPG|CHCG|NY-MEL-3|YCG1	non-SMC condensin I complex subunit G	protein-coding
134115	chr2	134123471	134123630	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-3575	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
87445	chr16	70751271	70751630	+	0	NA	intron (NM_001351157, intron 11 of 17)	intron (NM_001351157, intron 11 of 17)	-3645	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
28898	chr10	62855851	62856730	+	0	NA	Intergenic	Intergenic	-37123	NM_001136178	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
129674	chr2	70296471	70297280	+	0	NA	3' UTR (NM_001329758, exon 4 of 4)	3' UTR (NM_001329758, exon 4 of 4)	-3104	NM_001317171	6637		NM_003096	ENSG00000143977	SNRPG	SMG|Sm-G	small nuclear ribonucleoprotein polypeptide G	protein-coding
227862	chr9	93597301	93597700	+	0	NA	intron (NM_005392, intron 1 of 21)	intron (NM_005392, intron 1 of 21)	2659	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
78738	chr15	98850601	98851300	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	66524	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
220905	chr8	106660401	106660600	+	0	NA	intron (NM_181354, intron 1 of 13)	MamRTE1|LINE|RTE-BovB	2692	NM_181354	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
4790	chr1	23566151	23566650	+	0	NA	Intergenic	Intergenic	-6899	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
131932	chr2	99067901	99068100	+	0	NA	intron (NM_025244, intron 15 of 20)	MIRb|SINE|MIR	73180	NR_146001	80705		NM_025244	ENSG00000135951	TSGA10	CEP4L|CT79|SPGF26	testis specific 10	protein-coding
123769	chr19	55096351	55096450	+	0	NA	intron (NM_017607, intron 6 of 21)	intron (NM_017607, intron 6 of 21)	16008	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
138233	chr2	202831551	202832300	+	0	NA	intron (NM_001288622, intron 1 of 12)	L1MEb|LINE|L1	-2691	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
94920	chr17	31916901	31917550	+	0	NA	Intergenic	CpG	-15517	NM_018428	55813		NM_018428	ENSG00000108651	UTP6	C17orf40|HCA66	UTP6 small subunit processome component	protein-coding
66850	chr14	64974221	64974750	+	0	NA	intron (NM_001202559, intron 3 of 13)	AluY|SINE|Alu	-2149	NM_001330182	376267		NM_198686	ENSG00000139998	RAB15	-	RAB15, member RAS oncogene family	protein-coding
78569	chr15	93023151	93023450	+	0	NA	intron (NM_001271, intron 38 of 38)	L1MB5|LINE|L1	49856	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
28191	chr10	44680851	44681150	+	0	NA	Intergenic	L3|LINE|CR1	-230316	NM_001345926	643236		NM_001123376	ENSG00000187783	TMEM72	C10orf127|KSP37	transmembrane protein 72	protein-coding
139923	chr2	230772451	230772550	+	0	NA	intron (NM_016289, intron 2 of 8)	AluY|SINE|Alu	58952	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
146005	chr20	46545001	46545430	+	0	NA	intron (NM_080721, intron 2 of 2)	intron (NM_080721, intron 2 of 2)	5439	NM_080721	128506		NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
55473	chr12	104691421	104692280	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	100217	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
237585	chrX	123803421	123804150	+	0	NA	Intergenic	Intergenic	-55923	NR_165803	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
201234	chr6	143677801	143678500	+	0	NA	5' UTR (NM_001100164, exon 1 of 13)	5' UTR (NM_001100164, exon 1 of 13)	185	NM_001100164	9749		NM_014721	ENSG00000112419	PHACTR2	C6orf56	phosphatase and actin regulator 2	protein-coding
212633	chr7	129402301	129402500	+	0	NA	intron (NM_001130722, intron 6 of 16)	intron (NM_001130722, intron 6 of 16)	26562	NM_001130722	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
55325	chr12	103935671	103935830	+	0	NA	intron (NM_003299, intron 5 of 17)	intron (NM_003299, intron 5 of 17)	5325	NR_037425	100500842		NR_037425	ENSG00000284503	MIR3652	-	microRNA 3652	ncRNA
119971	chr19	41897801	41898000	+	0	NA	intron (NM_004706, intron 13 of 28)	intron (NM_004706, intron 13 of 28)	13457	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
6711	chr1	29235571	29236720	+	0	NA	promoter-TSS (NM_005704)	promoter-TSS (NM_005704)	-377	NM_133178	10076		NM_005704	ENSG00000060656	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	protein tyrosine phosphatase receptor type U	protein-coding
220655	chr8	101124521	101124780	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	45589	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
178441	chr4	147866671	147867280	+	0	NA	intron (NM_024605, intron 7 of 22)	intron (NM_024605, intron 7 of 22)	84380	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
30829	chr10	86389271	86389930	+	0	NA	Intergenic	CpG	-22805	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
193398	chr6	30415001	30415400	+	0	NA	Intergenic	Intergenic	70044	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
109518	chr19	844251	844900	+	0	NA	intron (NM_002777, intron 3 of 4)	CpG-12933	3576	NM_002777	5657		NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
81500	chr16	8953071	8953450	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	3120	NM_001321858	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
200098	chr6	130191921	130192250	+	0	NA	intron (NM_001258275, intron 7 of 13)	intron (NM_001258275, intron 7 of 13)	23800	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
145606	chr20	44641251	44641550	+	0	NA	intron (NR_136160, intron 1 of 10)	L2c|LINE|L2	10299	NM_000022	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
41698	chr11	66641371	66642050	+	0	NA	intron (NM_001198844, intron 2 of 2)	intron (NM_001198844, intron 2 of 2)	3007	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
208310	chr7	66116271	66116530	+	0	NA	intron (NM_001040648, intron 1 of 2)	AluJo|SINE|Alu	1553	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
210864	chr7	101133851	101134150	+	0	NA	intron (NM_000602, intron 5 of 8)	intron (NM_000602, intron 5 of 8)	6896	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
207884	chr7	50395601	50396200	+	0	NA	intron (NM_006060, intron 7 of 7)	HAL1b|LINE|L1	54450	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
95908	chr17	38903571	38903880	+	0	NA	intron (NM_006148, intron 4 of 6)	intron (NM_006148, intron 4 of 6)	-11254	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
1296	chr1	2339721	2339980	+	0	NA	intron (NM_024848, intron 10 of 13)	intron (NM_024848, intron 10 of 13)	12811	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
126570	chr2	28730801	28731200	+	0	NA	intron (NR_145832, intron 1 of 1)	intron (NR_145832, intron 1 of 1)	5205	NR_145832	100505774		NR_145832	ENSG00000226833	LOC100505774	-	uncharacterized LOC100505774	ncRNA
156285	chr22	40462421	40462800	+	0	NA	intron (NM_001282661, intron 4 of 13)	intron (NM_001282661, intron 4 of 13)	830	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
176692	chr4	101010721	101011200	+	0	NA	Intergenic	Intergenic	229912	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
128856	chr2	63875921	63876180	+	0	NA	intron (NM_001377528, intron 4 of 10)	intron (NM_001377528, intron 4 of 10)	34154	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
101037	chr17	64794001	64794300	+	0	NA	intron (NR_024386, intron 7 of 10)	intron (NR_024386, intron 7 of 10)	-12151	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
231039	chr9	129614951	129615530	+	0	NA	intron (NM_199350, intron 4 of 6)	intron (NM_199350, intron 4 of 6)	-4973	NM_001286797	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
129773	chr2	71083601	71084100	+	0	NA	Intergenic	Intergenic	15202	NM_001365466	55577		NM_017567	ENSG00000124357	NAGK	GNK|HSA242910	N-acetylglucosamine kinase	protein-coding
27573	chr10	32365451	32365750	+	0	NA	intron (NR_104163, intron 1 of 1)	AluSz|SINE|Alu	13169	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
35278	chr11	927621	928830	+	0	NA	intron (NR_144509, intron 1 of 20)	MER44A|DNA|TcMar-Tigger	2355	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
121748	chr19	47747151	47748400	+	0	NA	intron (NM_015710, intron 2 of 12)	AluSp|SINE|Alu	2229	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
180416	chr5	10373321	10374200	+	0	NA	intron (NM_001270661, intron 1 of 22)	intron (NM_001270661, intron 1 of 22)	20065	NM_001270661	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
182590	chr5	65994201	65994400	+	0	NA	intron (NM_001253697, intron 3 of 25)	intron (NM_001253697, intron 3 of 25)	-48727	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
145956	chr20	46174301	46174980	+	0	NA	exon (NM_021248, exon 12 of 12)	exon (NM_021248, exon 12 of 12)	56326	NR_126502	958		NM_001250	ENSG00000101017	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule	protein-coding
90020	chr16	89893901	89894850	+	0	NA	intron (NM_014972, intron 7 of 17)	intron (NM_014972, intron 7 of 17)	20783	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
137813	chr2	200373951	200374600	+	0	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	65325	NM_001282744	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
212734	chr7	129880021	129880630	+	0	NA	intron (NM_003344, intron 2 of 6)	AluSx1|SINE|Alu	72635	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
201380	chr6	144931401	144931650	+	0	NA	Intergenic	MER66C|LTR|ERV1	348377	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
10752	chr1	76300451	76300980	+	0	NA	intron (NM_001349108, intron 1 of 3)	MER117|DNA|hAT-Charlie	225969	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
140518	chr2	233214901	233215500	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-36371	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
199076	chr6	111655771	111655930	+	0	NA	Intergenic	Intergenic	-49576	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
12679	chr1	109452951	109453250	+	0	NA	Intergenic	AluY|SINE|Alu	-13446	NM_001040709	284612		NM_198280	ENSG00000143028	SYPL2	MG29	synaptophysin like 2	protein-coding
4640	chr1	22126221	22126900	+	0	NA	intron (NM_030761, intron 2 of 4)	intron (NM_030761, intron 2 of 4)	16537	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
216789	chr8	22531521	22532330	+	0	NA	intron (NM_001243974, intron 11 of 14)	intron (NM_001243974, intron 11 of 14)	-20002	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
82624	chr16	18929221	18929850	+	0	NA	Intergenic	Intergenic	-3127	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
186118	chr5	134142051	134142150	+	0	NA	intron (NM_001346425, intron 6 of 10)	intron (NM_001346425, intron 6 of 10)	18482	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
198820	chr6	109069671	109070450	+	0	NA	intron (NM_014454, intron 1 of 9)	L2|LINE|L2	24786	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
37502	chr11	18410101	18411230	+	0	NA	Intergenic	Intergenic	-1641	NM_002301	3948		NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
18277	chr1	161116301	161116500	+	0	NA	intron (NM_012394, intron 1 of 3)	AluSz|SINE|Alu	1637	NM_012394	5202		NM_012394	ENSG00000143256	PFDN2	PFD2	prefoldin subunit 2	protein-coding
86945	chr16	68112851	68113200	+	0	NA	intron (NM_173165, intron 1 of 9)	L1PA10|LINE|L1	27655	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
65574	chr14	51988351	51988450	+	0	NA	Intergenic	Intergenic	-1146	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
95830	chr17	38802521	38803180	+	0	NA	non-coding (NR_073428, exon 10 of 11)	non-coding (NR_073428, exon 10 of 11)	-2945	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
229446	chr9	121498321	121498850	+	0	NA	5' UTR (NM_001382587, exon 1 of 6)	5' UTR (NM_001382587, exon 1 of 6)	125	NM_001382587	2681		NM_001382584	ENSG00000204136	GGTA1	GGTA|GGTA1P|GLYT2|a1/3GTP	glycoprotein alpha-galactosyltransferase 1 (inactive)	protein-coding
130483	chr2	85559201	85559600	+	0	NA	intron (NM_001142269, intron 1 of 13)	intron (NM_001142269, intron 1 of 13)	2093	NM_001311312	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
225632	chr9	36328451	36329380	+	0	NA	Intergenic	Intergenic	-51937	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
219663	chr8	80496121	80496850	+	0	NA	intron (NM_023929, intron 1 of 6)	intron (NM_023929, intron 1 of 6)	10259	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
187886	chr5	148807551	148808180	+	0	NA	Intergenic	Intergenic	-18746	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
66197	chr14	61188321	61188580	+	0	NA	Intergenic	(GGCTCC)n|Simple_repeat|Simple_repeat	92888	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
197249	chr6	69887101	69887300	+	0	NA	intron (NM_001858, intron 2 of 50)	intron (NM_001858, intron 2 of 50)	20644	NM_001858	1310		NM_001858	ENSG00000082293	COL19A1	COL9A1L|D6S228E	collagen type XIX alpha 1 chain	protein-coding
45884	chr11	120108201	120108430	+	0	NA	Intergenic	Intergenic	20538	NM_001330382	23650		NM_012101	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding
43328	chr11	76419871	76420150	+	0	NA	Intergenic	Intergenic	-25008	NM_001300942	56946		NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY transcriptional repressor, BRCA2 interacting	protein-coding
210290	chr7	99429971	99430330	+	0	NA	intron (NM_015545, intron 3 of 7)	intron (NM_015545, intron 3 of 7)	8648	NM_015545	26024		NM_015545	ENSG00000106246	PTCD1	-	pentatricopeptide repeat domain 1	protein-coding
200414	chr6	134636551	134636800	+	0	NA	Intergenic	Intergenic	-96670	NR_125856	101928304		NR_125855	ENSG00000232310	LINC03002	-	long intergenic non-protein coding RNA 3002	ncRNA
157707	chr22	46393751	46394100	+	0	NA	intron (NM_001378328, intron 14 of 34)	intron (NM_001378328, intron 14 of 34)	58211	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
151066	chr21	44764201	44764400	+	0	NA	Intergenic	Intergenic	37520	NM_182688	7327		NM_003343	ENSG00000184787	UBE2G2	UBC7	ubiquitin conjugating enzyme E2 G2	protein-coding
209211	chr7	75440551	75441180	+	0	NA	intron (NM_001099415, intron 5 of 14)	intron (NM_001099415, intron 5 of 14)	30543	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
22760	chr1	224387201	224388150	+	0	NA	3' UTR (NM_025160, exon 14 of 14)	3' UTR (NM_025160, exon 14 of 14)	10636	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
35039	chr11	578021	578580	+	0	NA	intron (NM_001286582, intron 1 of 17)	intron (NM_001286582, intron 1 of 17)	1830	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
31031	chr10	88882071	88882500	+	0	NA	intron (NM_020799, intron 1 of 10)	intron (NM_020799, intron 1 of 10)	2040	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
181236	chr5	39193601	39194180	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	25673	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
58570	chr12	132429651	132429750	+	0	NA	Intergenic	Intergenic	-60451	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
50768	chr12	49028871	49029650	+	0	NA	intron (NM_003482, intron 44 of 54)	intron (NM_003482, intron 44 of 54)	-10484	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
81426	chr16	8849421	8849680	+	0	NA	promoter-TSS (NR_147908)	promoter-TSS (NR_147908)	81	NR_147908	100130283		NR_147908	ENSG00000140650	LOC100130283	-	uncharacterized LOC100130283	ncRNA
51066	chr12	49845551	49845730	+	0	NA	Intergenic	AluYe5|SINE|Alu	-2534	NM_181708	144233		NM_181708	ENSG00000186666	BCDIN3D	-	BCDIN3 domain containing RNA methyltransferase	protein-coding
98228	chr17	46153171	46153330	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	39532	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
218542	chr8	53979951	53980050	+	0	NA	intron (NR_109902, intron 2 of 4)	LTR8B|LTR|ERV1	42448	NM_006756	6917		NM_006756	ENSG00000187735	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A1	protein-coding
185975	chr5	133148351	133148450	+	0	NA	Intergenic	Intergenic	96387	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
227858	chr9	93580021	93580680	+	0	NA	intron (NM_005392, intron 1 of 21)	intron (NM_005392, intron 1 of 21)	3766	NM_005392	5253		NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding
122040	chr19	48636211	48641350	+	0	NA	non-coding (NR_136241, exon 8 of 9)	non-coding (NR_136241, exon 8 of 9)	741	NR_004401	653677		NR_004401	ENSG00000293426	SEC1P	SEC1	secretory blood group 1, pseudogene	pseudo
50539	chr12	47906921	47907450	+	0	NA	Intergenic	Intergenic	-2191	NM_001017535	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
71803	chr15	21742121	21742830	+	0	NA	Intergenic	Intergenic	-6476	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
190125	chr5	177985451	177985780	+	0	NA	Intergenic	CpG	10627	NM_006261	5626		NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
22795	chr1	224450021	224450500	+	0	NA	intron (NM_001322303, intron 1 of 5)	L2a|LINE|L2	15411	NR_136293	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
213679	chr7	140064171	140064330	+	0	NA	Intergenic	Intergenic	-1299	NR_130117	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
120873	chr19	45542671	45542830	+	0	NA	intron (NM_001017989, intron 1 of 1)	AluSc5|SINE|Alu	35271	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
192994	chr6	28134801	28135030	+	0	NA	intron (NR_103455, intron 1 of 2)	intron (NR_103455, intron 1 of 2)	2401	NR_103456	100129195		NR_103455	ENSG00000269293	ZSCAN16-AS1	-	ZSCAN16 antisense RNA 1	ncRNA
115309	chr19	14774151	14774250	+	0	NA	intron (NM_013447, intron 3 of 20)	intron (NM_013447, intron 3 of 20)	2727	NM_001271052	30817		NM_013447	ENSG00000127507	ADGRE2	CD312|CD97|EMR2|VBU	adhesion G protein-coupled receptor E2	protein-coding
216617	chr8	22091321	22092030	+	0	NA	intron (NR_148728, intron 2 of 19)	intron (NR_148728, intron 2 of 19)	2521	NR_148727	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
73355	chr15	42245371	42246130	+	0	NA	intron (NM_001286487, intron 5 of 18)	AluSx|SINE|Alu	27683	NM_015497	25963		NM_015497	ENSG00000103978	TMEM87A	ELKIN1	transmembrane protein 87A	protein-coding
72835	chr15	40132851	40133150	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-24121	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
219764	chr8	81095251	81095750	+	0	NA	intron (NM_018440, intron 1 of 8)	L2c|LINE|L2	16568	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
161827	chr3	45654351	45655130	+	0	NA	intron (NM_014240, intron 2 of 7)	AluJb|SINE|Alu	34142	NR_033947	644714		NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
211970	chr7	112795071	112795230	+	0	NA	Intergenic	L1MEh|LINE|L1	-4757	NM_001287497	64418		NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
46483	chr11	128322171	128322700	+	0	NA	Intergenic	Intergenic	113669	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
73406	chr15	42738371	42738530	+	0	NA	TTS (NM_173500)	TTS (NM_173500)	-1322	NM_138477	146059		NM_138477	ENSG00000140326	CDAN1	CDA1|CDAI|CDAN1A|DLT|PRO1295	codanin 1	protein-coding
111018	chr19	3056501	3056930	+	0	NA	intron (NM_198969, intron 3 of 6)	intron (NM_198969, intron 3 of 6)	5780	NM_001130	166		NM_001130	ENSG00000104964	TLE5	AES|AES-1|AES-2|ESP1|GRG|GRG5|Grg-5	TLE family member 5, transcriptional modulator	protein-coding
151098	chr21	44848851	44849580	+	0	NA	TTS (NR_104597)	TTS (NR_104597)	24475	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
30050	chr10	73816101	73816550	+	0	NA	3' UTR (NM_001367535, exon 19 of 19)	3' UTR (NM_001367535, exon 19 of 19)	-4505	NR_160744	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
47286	chr12	1653771	1654150	+	0	NA	Intergenic	Intergenic	6420	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
124077	chr19	55620021	55620880	+	0	NA	TTS (NM_203374)	TTS (NM_203374)	4116	NM_203374	147808		NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
167574	chr3	129481651	129482480	+	0	NA	intron (NM_001280545, intron 15 of 30)	intron (NM_001280545, intron 15 of 30)	41841	NM_052989	55764		NM_018262	ENSG00000163913	IFT122	CED|CED1|CFAP80|FAP80|SPG|WDR10|WDR10p|WDR140	intraflagellar transport 122	protein-coding
133741	chr2	127422851	127423780	+	0	NA	TTS (NR_039944)	TTS (NR_039944)	303	NR_039944	100616187		NR_039944	ENSG00000264075	MIR4783	-	microRNA 4783	ncRNA
43964	chr11	93739701	93740290	+	0	NA	intron (NM_024116, intron 1 of 5)	intron (NM_024116, intron 1 of 5)	1500	NM_024116	79101		NM_024116	ENSG00000166012	TAF1D	JOSD3|RAFI41|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I subunit D	protein-coding
42270	chr11	68216001	68216900	+	0	NA	Intergenic	Intergenic	-2802	NM_001300909	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
64290	chr14	23513271	23513430	+	0	NA	intron (NR_046051, intron 3 of 4)	intron (NR_046051, intron 3 of 4)	540	NR_046052	79178		NM_024328	ENSG00000259431	THTPA	THTP|THTPASE	thiamine triphosphatase	protein-coding
174453	chr4	39711121	39711380	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluY|SINE|Alu	13114	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
159431	chr3	13648301	13649030	+	0	NA	Intergenic	Intergenic	-2056	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
140381	chr2	233061391	233062350	+	0	NA	intron (NM_001017915, intron 1 of 26).2	intron (NM_001017915, intron 1 of 26).2	1528	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
69668	chr14	98018401	98019050	+	0	NA	Intergenic	Intergenic	-40601	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
175055	chr4	53430801	53431300	+	0	NA	intron (NR_164849, intron 12 of 16)	intron (NR_164849, intron 12 of 16)	53409	NM_001376783	81608		NM_030917	ENSG00000145216	FIP1L1	FIP1|Rhe|hFip1	factor interacting with PAPOLA and CPSF1	protein-coding
66029	chr14	58277001	58277200	+	0	NA	intron (NR_029435, intron 2 of 3)	AluSq|SINE|Alu	-10933	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
55550	chr12	105784151	105784250	+	0	NA	Intergenic	Intergenic	77426	NR_110110	101929110		NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility 18	ncRNA
47073	chr12	568371	568750	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	17926	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
192129	chr6	16755471	16755830	+	0	NA	intron (NM_000332, intron 1 of 8)	intron (NM_000332, intron 1 of 8)	4534	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
58621	chr12	132495921	132496180	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	5899	NM_001382740	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
150380	chr21	42268201	42268630	+	0	NA	intron (NM_207628, intron 4 of 16)	intron (NM_207628, intron 4 of 16)	46994	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
149430	chr21	31354221	31355680	+	0	NA	intron (NM_001353690, intron 1 of 27)	intron (NM_001353690, intron 1 of 27)	-10596	NM_001353687	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
2242	chr1	8875121	8876010	+	0	NA	intron (NM_001428, intron 1 of 11)	intron (NM_001428, intron 1 of 11)	3121	NM_001353346	2023		NM_001428	ENSG00000074800	ENO1	ENO1-IT1|ENO1L1|HEL-S-17|MPB1|NNE|PPH	enolase 1	protein-coding
104722	chr17	81602751	81603050	+	0	NA	intron (NM_001369698, intron 8 of 16)	(TA)n|Simple_repeat|Simple_repeat	-25467	NR_130139	55666		NM_017921	ENSG00000182446	NPLOC4	NPL4	NPL4 homolog, ubiquitin recognition factor	protein-coding
118088	chr19	34390821	34391700	+	0	NA	intron (NM_001184722, intron 9 of 17)	intron (NM_001184722, intron 9 of 17)	-13138	NM_001353433	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
114405	chr19	12637901	12638500	+	0	NA	Intergenic	Intergenic	27280	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
115003	chr19	14057351	14058050	+	0	NA	promoter-TSS (NM_001367327)	promoter-TSS (NM_001367327)	-62	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
40637	chr11	64720271	64720430	+	0	NA	intron (NM_015080, intron 1 of 22)	intron (NM_015080, intron 1 of 22)	2847	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
161545	chr3	42654071	42655500	+	0	NA	promoter-TSS (NR_125400)	promoter-TSS (NR_125400)	-397	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
83823	chr16	28844101	28844780	+	0	NA	promoter-TSS (NR_039872)	promoter-TSS (NR_039872)	-433	NR_039872	100616256		NR_039872	ENSG00000283845	MIR4721	-	microRNA 4721	ncRNA
235517	chrX	47195421	47195900	+	0	NA	intron (NM_003334, intron 1 of 25)	intron (NM_003334, intron 1 of 25)	1831	NM_003334	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
105519	chr17	83112971	83114080	+	0	NA	Intergenic	Intergenic	32379	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
64265	chr14	23298971	23299130	+	0	NA	intron (NM_001276318, intron 4 of 4)	AluSz|SINE|Alu	3809	NM_001276318	90673		NM_001276318	ENSG00000235194	PPP1R3E	-	protein phosphatase 1 regulatory subunit 3E	protein-coding
193487	chr6	30548651	30548750	+	0	NA	intron (NM_005275, intron 8 of 11)	L2a|LINE|L2	-8009	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
83992	chr16	29442251	29442550	+	0	NA	TTS (NM_001320622)	TTS (NM_001320622)	4626	NR_135312	100422558		NR_135312	ENSG00000254634	SMG1P6	-	SMG1 pseudogene 6	pseudo
3884	chr1	17013901	17014180	+	0	NA	Intergenic	Intergenic	-2112	NM_001141973	23400		NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9|SPG78	ATPase cation transporting 13A2	protein-coding
79386	chr16	657051	657550	+	0	NA	intron (NM_145294, intron 20 of 40)	intron (NM_145294, intron 20 of 40)	7935	NM_145294	197335		NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19|POC16	WD repeat domain 90	protein-coding
1675	chr1	3922201	3922600	+	0	NA	Intergenic	MER51A|LTR|ERV1	-18212	NR_040065	728716		NR_040065		LINC01346	-	long intergenic non-protein coding RNA 1346	ncRNA
34950	chr11	454871	456030	+	0	NA	intron (NR_138046, intron 1 of 12)	intron (NR_138046, intron 1 of 12)	5171	NM_001329545	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
206	chr1	763371	763530	+	0	NA	intron (NR_168328, intron 7 of 19)	intron (NR_168328, intron 7 of 19)	15184	NR_168328	100288069		NR_168328		LOC100288069	-	uncharacterized LOC100288069	ncRNA
187507	chr5	142355451	142356000	+	0	NA	intron (NR_120664, intron 3 of 3)	AluSp|SINE|Alu	30432	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
235491	chrX	46912901	46913730	+	0	NA	intron (NM_014735, intron 1 of 10)	CpG	894	NM_014735	9767		NM_014735	ENSG00000102221	JADE3	JADE-3|PHF16	jade family PHD finger 3	protein-coding
19153	chr1	171582021	171582280	+	0	NA	intron (NM_015172, intron 28 of 33)	intron (NM_015172, intron 28 of 33)	-37613	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
176906	chr4	102803621	102803880	+	0	NA	intron (NM_003340, intron 4 of 7)	intron (NM_003340, intron 4 of 7)	22110	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
27450	chr10	31926221	31926480	+	0	NA	intron (NM_018287, intron 1 of 19)	Tigger18a|DNA|TcMar-Tigger	2481	NM_001270698	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
90859	chr17	2368301	2368950	+	0	NA	intron (NM_014853, intron 12 of 23)	intron (NM_014853, intron 12 of 23)	31124	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
82977	chr16	21955351	21956050	+	0	NA	intron (NM_003366, intron 1 of 13)	intron (NM_003366, intron 1 of 13)	2339	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
68042	chr14	75216151	75216250	+	0	NA	Intergenic	Intergenic	-39588	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
145992	chr20	46387751	46387850	+	0	NA	intron (NM_182764, intron 6 of 20)	intron (NM_182764, intron 6 of 20)	18815	NM_001318253	63916		NM_022086	ENSG00000062598	ELMO2	CED-12|CED12|Ced-12A|ELMO-2|VMPI	engulfment and cell motility 2	protein-coding
109381	chr19	652871	653030	+	0	NA	intron (NM_194460, intron 1 of 8)	CpG-12906	10264	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
100430	chr17	60720801	60721000	+	0	NA	intron (NM_001353144, intron 5 of 25)	intron (NM_001353144, intron 5 of 25)	43049	NM_001330414	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
7188	chr1	32270021	32270600	+	0	NA	intron (NM_005356, intron 1 of 12)	AluSx1|SINE|Alu	-3801	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
150234	chr21	41359851	41359950	+	0	NA	Intergenic	AluSz|SINE|Alu	-2127	NM_002463	4600		NM_002463	ENSG00000183486	MX2	MXB	MX dynamin like GTPase 2	protein-coding
153162	chr22	23788571	23788730	+	0	NA	intron (NM_003073, intron 1 of 8).2	AluJb|SINE|Alu	1684	NM_001007468	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
197027	chr6	53336671	53336830	+	0	NA	non-coding (NR_046241, exon 1 of 1)	non-coding (NR_046241, exon 1 of 1)	867	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
39015	chr11	47742251	47742950	+	0	NA	intron (NM_015308, intron 8 of 16)	intron (NM_015308, intron 8 of 16)	24741	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
180064	chr5	1092821	1093280	+	0	NA	intron (NM_006598, intron 3 of 23).2	intron (NM_006598, intron 3 of 23).2	19013	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
69377	chr14	94029751	94030530	+	0	NA	intron (NM_023112, intron 1 of 5)	L2a|LINE|L2	3800	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
44145	chr11	96158171	96158600	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-183053	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
235760	chrX	49001351	49003150	+	0	NA	promoter-TSS (NM_020137)	promoter-TSS (NM_020137)	14	NM_020137	56850		NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
224274	chr9	6136101	6136300	+	0	NA	Intergenic	L1PA2|LINE|L1	-78949	NM_001314047	90865		NM_033439	ENSG00000137033	IL33	C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV	interleukin 33	protein-coding
102891	chr17	76526301	76527050	+	0	NA	promoter-TSS (NR_033357)	promoter-TSS (NR_033357)	-911	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
128892	chr2	64134821	64135880	+	0	NA	intron (NM_020651, intron 1 of 6)	intron (NM_020651, intron 1 of 6)	9070	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
176656	chr4	99952271	99952430	+	0	NA	intron (NR_125923, intron 1 of 3)	MIR|SINE|MIR	1856	NR_125923	256880		NR_002799		H2AZ1-DT	-	H2AZ1 divergent transcript	ncRNA
68554	chr14	89361651	89363700	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	54558	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
83781	chr16	28743321	28744130	+	0	NA	Intergenic	AluY|SINE|Alu	-8710	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
163410	chr3	50546701	50546900	+	0	NA	Intergenic	Intergenic	20947	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
15257	chr1	149631471	149632080	+	0	NA	intron (NR_111950, intron 1 of 8)	intron (NR_111950, intron 1 of 8)	24763	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
119537	chr19	40583121	40583380	+	0	NA	intron (NM_138392, intron 10 of 17)	intron (NM_138392, intron 10 of 17)	6377	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
113140	chr19	8329601	8329800	+	0	NA	intron (NM_198471, intron 7 of 10)	MER70B|LTR|ERVL	8204	NM_001031	6234		NM_001031	ENSG00000233927	RPS28	DBA15|S28|eS28	ribosomal protein S28	protein-coding
32875	chr10	110107801	110108180	+	0	NA	intron (NM_001320594, intron 3 of 15)	intron (NM_001320594, intron 3 of 15)	43990	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
198571	chr6	107113921	107116230	+	0	NA	promoter-TSS (NM_001080450)	promoter-TSS (NM_001080450)	440	NM_001367314	57673		NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
95183	chr17	35186551	35186650	+	0	NA	3' UTR (NM_001308281, exon 17 of 17)	3' UTR (NM_001308281, exon 17 of 17)	7793	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
182707	chr5	68234401	68234850	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	18869	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
213646	chr7	139737571	139738180	+	0	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	40123	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
48407	chr12	9658901	9659580	+	0	NA	TTS (NR_046450)	TTS (NR_046450)	-10473	NM_001197318	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
109887	chr19	1258511	1259900	+	0	NA	TTS (NM_177401)	TTS (NM_177401)	-10063	NM_001280	1153		NM_001280	ENSG00000099622	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
94700	chr17	30691601	30691800	+	0	NA	Intergenic	AluJb|SINE|Alu	-17908	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
152886	chr22	22685071	22685230	+	0	NA	Intergenic	(GCA)n|Simple_repeat|Simple_repeat	38838	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
27818	chr10	38012371	38013200	+	0	NA	intron (NM_001278177, intron 2 of 4)	intron (NM_001278177, intron 2 of 4)	2110	NM_001324177	7581		NM_006954	ENSG00000189180	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
162673	chr3	48925401	48925600	+	0	NA	intron (NM_001349209, intron 2 of 15)	AluJr|SINE|Alu	-6115	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
1627	chr1	3743921	3744180	+	0	NA	intron (NR_033710, intron 1 of 5)	intron (NR_033710, intron 1 of 5)	2721	NR_033712	57212		NM_207306	ENSG00000293478	GFOD3P	KIAA0495|PDAM|TP73-AS1	Gfo/Idh/MocA-like oxidoreductase domain containing 3, pseudogene	pseudo
69179	chr14	92648321	92648800	+	0	NA	intron (NM_024832, intron 5 of 9)	intron (NM_024832, intron 5 of 9)	72326	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
206565	chr7	35658371	35658530	+	0	NA	intron (NM_022373, intron 5 of 8)	L1MA4A|LINE|L1	36685	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
15777	chr1	151191401	151191800	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1403	NM_005997	6944		NM_005997	ENSG00000163159	VPS72	CFL1|Swc2|TCFL1|YL-1|YL1	vacuolar protein sorting 72 homolog	protein-coding
102397	chr17	75588901	75589800	+	0	NA	exon (NM_001309242, exon 1 of 63)	exon (NM_001309242, exon 1 of 63)	1292	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
232399	chr9	135992501	135993330	+	0	NA	Intergenic	Intergenic	-31542	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
99287	chr17	49763021	49765200	+	0	NA	promoter-TSS (NM_030802)	promoter-TSS (NM_030802)	21	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
6819	chr1	30952101	30952530	+	0	NA	exon (NM_001020658, exon 16 of 22)	exon (NM_001020658, exon 16 of 22)	-3110	NR_033295	692235		NR_033295		SNORD103B	U103B	small nucleolar RNA, C/D box 103B	snoRNA
124226	chr19	57284871	57285030	+	0	NA	intron (NM_001330622, intron 2 of 2)	AluSp|SINE|Alu	4465	NM_006635	10794		NM_006635	ENSG00000197714	ZNF460	HZF8|ZNF272	zinc finger protein 460	protein-coding
223463	chr8	144007851	144007950	+	0	NA	Intergenic	MIR|SINE|MIR	-4380	NM_198572	375686		NM_198572	ENSG00000186583	SPATC1	SPATA15	spermatogenesis and centriole associated 1	protein-coding
4772	chr1	23541251	23541550	+	0	NA	Intergenic	AluY|SINE|Alu	-10167	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
74046	chr15	52481621	52482980	+	0	NA	intron (NM_000259, intron 1 of 40)	intron (NM_000259, intron 1 of 40)	46580	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
71071	chr14	104843371	104843930	+	0	NA	Intergenic	CpG	-21618	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
75079	chr15	64382751	64383050	+	0	NA	intron (NR_109934, intron 1 of 3)	AluSx|SINE|Alu	-1459	NM_014736	9768		NM_014736	ENSG00000166803	PCLAF	KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF	PCNA clamp associated factor	protein-coding
85506	chr16	50765321	50766080	+	0	NA	intron (NM_015247, intron 7 of 19)	Tigger1|DNA|TcMar-Tigger	23285	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
119316	chr19	39890321	39891030	+	0	NA	intron (NM_003890, intron 15 of 28)	intron (NM_003890, intron 15 of 28)	43951	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
159396	chr3	13449271	13449930	+	0	NA	Intergenic	L1ME2|LINE|L1	-29278	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
27111	chr10	27568251	27569180	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	64411	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
88523	chr16	85369921	85370700	+	0	NA	Intergenic	Intergenic	-63985	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
133412	chr2	118853971	118854630	+	0	NA	Intergenic	CpG	-6652	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
89934	chr16	89733751	89734330	+	0	NA	intron (NR_110126, intron 9 of 10)	intron (NR_110126, intron 9 of 10)	12503	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
3354	chr1	15577671	15578280	+	0	NA	intron (NM_024758, intron 4 of 6)	MIR|SINE|MIR	7076	NM_024758	79814		NM_024758	ENSG00000116771	AGMAT	-	agmatinase (putative)	protein-coding
140887	chr2	237636601	237636880	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	9153	NM_001137550	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
107342	chr18	45825471	45825850	+	0	NA	promoter-TSS (NM_213602)	promoter-TSS (NM_213602)	-15	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
206472	chr7	33034671	33035080	+	0	NA	intron (NM_001166118, intron 2 of 10)	intron (NM_001166118, intron 2 of 10)	6031	NM_001356996	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
162774	chr3	49084451	49084550	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluSx1|SINE|Alu	9132	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
42750	chr11	72717701	72718400	+	0	NA	intron (NM_001040118, intron 3 of 34)	intron (NM_001040118, intron 3 of 34)	4290	NR_161388	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
197276	chr6	70686451	70686830	+	0	NA	intron (NM_001281440, intron 1 of 10)	intron (NM_001281440, intron 1 of 10)	18110	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
227677	chr9	92991101	92991380	+	0	NA	intron (NM_001369951, intron 3 of 17)	AluSx1|SINE|Alu	16771	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
229479	chr9	122126271	122126430	+	0	NA	Intergenic	Intergenic	-6183	NR_039690	100616312		NR_039690	ENSG00000266583	MIR4478	mir-4478	microRNA 4478	ncRNA
95728	chr17	38577171	38577330	+	0	NA	intron (NM_025248, intron 2 of 18)	intron (NM_025248, intron 2 of 18)	28702	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
70946	chr14	104660951	104661250	+	0	NA	TTS (NR_135293)	TTS (NR_135293)	4458	NR_135293	101929634		NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
43098	chr11	74883071	74883230	+	0	NA	intron (NR_165437, intron 5 of 11)	L1PA2|LINE|L1	65941	NM_001378157	143570		NM_182969	ENSG00000166435	XRRA1	-	X-ray radiation resistance associated 1	protein-coding
221121	chr8	118108651	118109180	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	2911	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
235336	chrX	43958421	43958750	+	0	NA	exon (NM_000266, exon 2 of 3)	exon (NM_000266, exon 2 of 3)	8853	NR_046631	100873919		NR_046631	ENSG00000236276	NDP-AS1	-	NDP antisense RNA 1	ncRNA
236864	chrX	80156851	80156950	+	0	NA	Intergenic	L1PA3|LINE|L1	133840	NM_001303475	50945		NM_016954	ENSG00000122145	TBX22	ABERS|CLPA|CPX|TBXX|dJ795G23.1	T-box transcription factor 22	protein-coding
213990	chr7	142835601	142835800	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-19314	NM_001280794	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
144389	chr20	35214571	35214730	+	0	NA	intron (NM_001355008, intron 4 of 14)	AluSc8|SINE|Alu	-12040	NM_006690	10893		NM_006690	ENSG00000125966	MMP24	MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding
28343	chr10	46653651	46654050	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1874	NR_027632	414241		NM_001098846	ENSG00000165874	SHLD2P1	FAM35B|FAM35BP|FAM35EP|bA38L15.1	shieldin complex subunit 2 pseudogene 1	pseudo
215161	chr7	155598701	155599000	+	0	NA	Intergenic	Intergenic	-28104	NM_001369813	285888		NM_001103176	ENSG00000146910	CNPY1	-	canopy FGF signaling regulator 1	protein-coding
153078	chr22	23317921	23318200	+	0	NA	TTS (NM_004327)	TTS (NM_004327)	-8556	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
63854	chr14	21535501	21535930	+	0	NA	intron (NR_111966, intron 1 of 2)	MIR|SINE|MIR	1406	NM_001291446	6297		NM_005407	ENSG00000165821	SALL2	COLB|HSAL2|Sal-2|ZNF795|p150(Sal2)	spalt like transcription factor 2	protein-coding
62334	chr13	99077051	99077700	+	0	NA	intron (NM_001318849, intron 1 of 54)	MSTA|LTR|ERVL-MaLR	9319	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
12168	chr1	100354041	100354400	+	0	NA	intron (NM_001319210, intron 2 of 16)	intron (NM_001319210, intron 2 of 16)	1714	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
145618	chr20	44669071	44669430	+	0	NA	intron (NR_034104, intron 1 of 4)	AluSx3|SINE|Alu	2489	NR_034104	79015		NM_024049	ENSG00000283440	LINC01260	-	long intergenic non-protein coding RNA 1260	ncRNA
122454	chr19	49503001	49504230	+	0	NA	Intergenic	Intergenic	-2747	NR_029703	406942		NR_029703	ENSG00000207782	MIR150	MIRN150|miRNA150|mir-150	microRNA 150	ncRNA
9510	chr1	51330001	51330750	+	0	NA	promoter-TSS (NM_001297664)	promoter-TSS (NM_001297664)	-173	NM_001297664	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
112401	chr19	6126421	6127050	+	0	NA	Intergenic	LTR55|LTR|ERVL?	-8898	NM_001289180	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
141953	chr20	1285371	1285730	+	0	NA	intron (NM_014723, intron 2 of 5)	MIRb|SINE|MIR	19256	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
211699	chr7	106766951	106767630	+	0	NA	Intergenic	LTR62|LTR|ERVL	-97992	NM_001282427	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
12400	chr1	101297721	101297980	+	0	NA	Intergenic	Intergenic	-25987	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
195048	chr6	35492451	35492550	+	0	NA	intron (NM_003214, intron 1 of 12)	intron (NM_003214, intron 1 of 12)	4579	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
128725	chr2	61853271	61855180	+	0	NA	promoter-TSS (NR_037710)	promoter-TSS (NR_037710)	-165	NM_032180	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
29749	chr10	72198971	72199130	+	0	NA	intron (NM_001369102, intron 5 of 11)	AluSg|SINE|Alu	16906	NM_001369106	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
23954	chr1	235133951	235134250	+	0	NA	intron (NR_144490, intron 9 of 9)	AluJb|SINE|Alu	-5263	NM_014765	9804		NM_014765	ENSG00000173726	TOMM20	MAS20|MOM19|TOM20	translocase of outer mitochondrial membrane 20	protein-coding
180408	chr5	10354991	10355730	+	0	NA	intron (NM_001270661, intron 1 of 22)	intron (NM_001270661, intron 1 of 22)	1665	NM_001270661	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
199156	chr6	111734251	111734830	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	24591	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
219286	chr8	67733721	67733980	+	0	NA	intron (NM_020361, intron 1 of 10)	AluJb|SINE|Alu	12510	NM_020361	57094		NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
33713	chr10	121737951	121738150	+	0	NA	Intergenic	Intergenic	-139592	NM_022970	2263		NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
141603	chr2	241641621	241642080	+	0	NA	intron (NM_013325, intron 1 of 12)	intron (NM_013325, intron 1 of 12)	4157	NM_013325	23192		NM_013325	ENSG00000168397	ATG4B	APG4B|AUTL1|HsAPG4B	autophagy related 4B cysteine peptidase	protein-coding
206104	chr7	27207721	27207980	+	0	NA	TTS (NR_037843)	TTS (NR_037843)	7429	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
144083	chr20	33719651	33721000	+	0	NA	promoter-TSS (NM_007238)	promoter-TSS (NM_007238)	-15	NM_183397	11264		NM_007238	ENSG00000101417	PXMP4	PMP24	peroxisomal membrane protein 4	protein-coding
153934	chr22	30335151	30335250	+	0	NA	intron (NM_005877, intron 15 of 15)	intron (NM_005877, intron 15 of 15)	-8259	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
12861	chr1	110087921	110088780	+	0	NA	intron (NR_126382, intron 1 of 3)	intron (NR_126382, intron 1 of 3)	5662	NR_126382	104355139		NR_126382	ENSG00000258673	LINC01397	-	long intergenic non-protein coding RNA 1397	ncRNA
145485	chr20	43914201	43916530	+	0	NA	promoter-TSS (NM_001098796)	promoter-TSS (NM_001098796)	513	NM_001098797	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
161321	chr3	39413251	39413680	+	0	NA	TTS (NM_001304288)	TTS (NM_001304288)	2411	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
76524	chr15	75066151	75066550	+	0	NA	Intergenic	LTR19C|LTR|ERV1	23064	NM_001301105	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
107193	chr18	35968421	35968880	+	0	NA	Intergenic	MER9a1|LTR|ERVK	-3975	NM_001201475	83608		NM_031446	ENSG00000141428	C18orf21	HsT3108|PNAS-124|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
16006	chr1	152013551	152014130	+	0	NA	Intergenic	Intergenic	-4438	NR_103561	441908		NR_103561		NBPF18P	-	NBPF member 18, pseudogene	pseudo
134594	chr2	144310721	144311480	+	0	NA	intron (NM_001376311, intron 1 of 11)	UCON66|Unknown|Unknown	-15787	NM_001354361	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
148252	chr20	63651251	63651610	+	0	NA	intron (NR_075070, intron 1 of 4)	intron (NR_075070, intron 1 of 4)	1336	NM_001276310	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
81648	chr16	10946171	10946700	+	0	NA	intron (NM_001243403, intron 1 of 20)	intron (NM_001243403, intron 1 of 20)	1871	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
140506	chr2	233205451	233205830	+	0	NA	intron (NM_001017915, intron 26 of 26).2	AluSq|SINE|Alu	-45931	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
207943	chr7	51162771	51163080	+	0	NA	intron (NM_001346441, intron 5 of 12)	intron (NM_001346441, intron 5 of 12)	153884	NM_001346441	23242		NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
53870	chr12	70247771	70247930	+	0	NA	intron (NR_037615, intron 1 of 16)	intron (NR_037615, intron 1 of 16)	4136	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
62653	chr13	102394001	102395050	+	0	NA	promoter-TSS (NR_036486)	promoter-TSS (NR_036486)	-6	NR_036486	283480		NR_036486	ENSG00000243319	FGF14-IT1	-	FGF14 intronic transcript 1	ncRNA
225555	chr9	35882301	35882600	+	0	NA	Intergenic	Intergenic	-12049	NM_001004487	392309		NM_001004487	ENSG00000168828	OR13J1	OR9-2	olfactory receptor family 13 subfamily J member 1	protein-coding
154203	chr22	31451721	31452350	+	0	NA	intron (NM_001164502, intron 8 of 16)	intron (NM_001164502, intron 8 of 16)	37521	NM_001164501	56478		NM_019843	ENSG00000184708	EIF4ENIF1	4E-T|Clast4	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding
36847	chr11	10305401	10305790	+	0	NA	intron (NM_001124, intron 1 of 3)	CpG	522	NM_001124	133		NM_001124	ENSG00000148926	ADM	AM|PAMP	adrenomedullin	protein-coding
18757	chr1	167497871	167498030	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	20579	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
47460	chr12	3843401	3843600	+	0	NA	intron (NM_001286521, intron 1 of 6)	intron (NM_001286521, intron 1 of 6)	29899	NM_001286522	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
66399	chr14	61500851	61501430	+	0	NA	intron (NM_006255, intron 10 of 13)	MIR|SINE|MIR	69054	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
14282	chr1	143729101	143730200	+	0	NA	promoter-TSS (NR_004400).5	promoter-TSS (NR_004400).5	-80	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
142928	chr20	18496421	18497390	+	0	NA	intron (NM_006606, intron 1 of 4)	intron (NM_006606, intron 1 of 4)	320	NM_006606	10741		NM_006606	ENSG00000089050	RBBP9	BOG|RBBP10	RB binding protein 9, serine hydrolase	protein-coding
218797	chr8	59022971	59023330	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	95997	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
78059	chr15	90101201	90103280	+	0	NA	non-coding (NR_149130, exon 1 of 3)	non-coding (NR_149130, exon 1 of 3)	108	NR_149130	105370966		NR_149130		IDH2-DT	-	IDH2 divergent transcript	ncRNA
47108	chr12	670401	670600	+	0	NA	Intergenic	(AAAG)n|Simple_repeat|Simple_repeat	-7055	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
104895	chr17	81889351	81889450	+	0	NA	intron (NR_158770, intron 2 of 6)	intron (NR_158770, intron 2 of 6)	-1390	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
230395	chr9	128106151	128106930	+	0	NA	intron (NR_049766, intron 8 of 9)	intron (NR_049766, intron 8 of 9)	8058	NR_049766	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
178621	chr4	152104951	152105250	+	0	NA	TTS (NR_121628)	TTS (NR_121628)	4282	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
152507	chr22	20942921	20943180	+	0	NA	intron (NR_156180, intron 2 of 3)	L1MB4|LINE|L1	-14042	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
138975	chr2	218279971	218280130	+	0	NA	TTS (NR_106768)	TTS (NR_106768)	138	NR_106768	102465256		NR_106768	ENSG00000284173	MIR6513	hsa-mir-6513|mir-6513	microRNA 6513	ncRNA
47801	chr12	6578001	6578200	+	0	NA	exon (NM_001363606, exon 36 of 40)	exon (NM_001363606, exon 36 of 40)	3509	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
159368	chr3	13335901	13336100	+	0	NA	intron (NM_024923, intron 27 of 39)	intron (NM_024923, intron 27 of 39)	-52743	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
47495	chr12	3983751	3984280	+	0	NA	Intergenic	L1MEc|LINE|L1	-110567	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
54794	chr12	94282521	94283450	+	0	NA	intron (NM_005761, intron 23 of 30)	intron (NM_005761, intron 23 of 30)	20366	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
67918	chr14	74619801	74620100	+	0	NA	Intergenic	Intergenic	-7713	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
141704	chr2	241840201	241841380	+	0	NA	Intergenic	AluSx1|SINE|Alu	18104	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
232093	chr9	133658401	133659000	+	0	NA	3' UTR (NM_000787, exon 12 of 12)	3' UTR (NM_000787, exon 12 of 12)	-1292	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
109506	chr19	832951	833650	+	0	NA	Intergenic	(AAG)n|Simple_repeat|Simple_repeat	5463	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
38804	chr11	47285301	47285700	+	0	NA	exon (NM_001376597, exon 14 of 36)	exon (NM_001376597, exon 14 of 36)	-13390	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
69867	chr14	99274201	99275750	+	0	NA	Intergenic	CpG	-2778	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
191489	chr6	11217301	11217500	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	15268	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
136492	chr2	177229101	177229300	+	0	NA	Intergenic	Intergenic	16406	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
27952	chr10	42086301	42086800	+	0	NA	Intergenic	Intergenic	281495	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
80654	chr16	3005771	3006330	+	0	NA	Intergenic	Intergenic	-6873	NM_020982	9080		NM_020982	ENSG00000213937	CLDN9	DFNB116	claudin 9	protein-coding
11768	chr1	92459751	92460650	+	0	NA	Intergenic	Intergenic	23754	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
227699	chr9	93022001	93022400	+	0	NA	intron (NM_001369951, intron 13 of 17)	intron (NM_001369951, intron 13 of 17)	-7256	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
58127	chr12	124897221	124897480	+	0	NA	Intergenic	L1MB5|LINE|L1	17300	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
34452	chr10	132433451	132433750	+	0	NA	Intergenic	AluSc8|SINE|Alu	-11589	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
10066	chr1	58753301	58753580	+	0	NA	Intergenic	Intergenic	30607	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
172394	chr4	1771401	1772550	+	0	NA	Intergenic	Intergenic	-21318	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
40131	chr11	62831171	62832770	+	0	NA	promoter-TSS (NR_135084)	promoter-TSS (NR_135084)	81	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
15531	chr1	150527301	150527700	+	0	NA	Intergenic	AluSx1|SINE|Alu	11743	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
34234	chr10	130128801	130129080	+	0	NA	Intergenic	Intergenic	-7435	NM_001199868	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
11539	chr1	91008051	91009000	+	0	NA	intron (NM_032186, intron 1 of 3)	intron (NM_032186, intron 1 of 3)	12983	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
225389	chr9	35039501	35040030	+	0	NA	Intergenic	L2c|LINE|L2	-1330	NM_001040411	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
4321	chr1	20481171	20481730	+	0	NA	TTS (NM_018584)	TTS (NM_018584)	4760	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
201741	chr6	149922201	149922400	+	0	NA	intron (NM_001001788, intron 1 of 4)	intron (NM_001001788, intron 1 of 4)	821	NM_001001788	353091		NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
229497	chr9	122222901	122223500	+	0	NA	intron (NM_199160, intron 4 of 8)	intron (NM_199160, intron 4 of 8)	-1460	NM_001242335	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
198419	chr6	106082551	106083480	+	0	NA	Intergenic	Intergenic	-3321	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
120091	chr19	42127521	42128150	+	0	NA	intron (NM_001247994, intron 1 of 13)	L2c|LINE|L2	4611	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
179884	chr5	649901	651630	+	0	NA	intron (NR_164122, intron 11 of 15)	intron (NR_164122, intron 11 of 15)	38425	NM_018140	55722		NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72	protein-coding
216910	chr8	22699921	22700180	+	0	NA	Intergenic	AluSx4|SINE|Alu	-6570	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
40838	chr11	65016571	65016730	+	0	NA	intron (NM_001199745, intron 1 of 3)	L2-1_AMi|LINE|L2	-1855	NR_106939	102466756		NR_106939	ENSG00000278851	MIR6879	hsa-mir-6879	microRNA 6879	ncRNA
59206	chr13	22915471	22915830	+	0	NA	intron (NR_138043, intron 1 of 2)	CpG	719	NR_138043	100996930		NR_138043		LINC00621	-	long intergenic non-protein coding RNA 621	ncRNA
239253	chrY	13368071	13368230	+	0	NA	intron (NR_047639, intron 8 of 25)	AluY|SINE|Alu	-111027	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
116078	chr19	17242171	17242550	+	0	NA	intron (NM_005234, intron 1 of 3)	intron (NM_005234, intron 1 of 3)	2982	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
140702	chr2	234301351	234301650	+	0	NA	Intergenic	Intergenic	153095	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
53025	chr12	57589771	57589930	+	0	NA	Intergenic	AluSx|SINE|Alu	-1342	NM_001146259	79837		NM_024779	ENSG00000166908	PIP4K2C	PIP5K2C	phosphatidylinositol-5-phosphate 4-kinase type 2 gamma	protein-coding
9831	chr1	54054621	54054880	+	0	NA	TTS (NR_039942)	TTS (NR_039942)	671	NR_039942	100616315		NR_039942	ENSG00000283749	MIR4781	mir-4781	microRNA 4781	ncRNA
156140	chr22	40130271	40130830	+	0	NA	intron (NM_001024843, intron 3 of 23)	AluYe6|SINE|Alu	-47375	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
83465	chr16	27365001	27365200	+	0	NA	TTS (NM_001257407)	TTS (NM_001257407)	-37074	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
99549	chr17	50378501	50378700	+	0	NA	exon (NM_001166131, exon 4 of 9)	exon (NM_001166131, exon 4 of 9)	5371	NM_152463	146956		NM_152463	ENSG00000154920	EME1	MMS4L|SLX2A	essential meiotic structure-specific endonuclease 1	protein-coding
229511	chr9	122350451	122351150	+	0	NA	Intergenic	Intergenic	-19733	NM_001271368	5742		NM_000962	ENSG00000095303	PTGS1	COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS	prostaglandin-endoperoxide synthase 1	protein-coding
176869	chr4	102620451	102620850	+	0	NA	Intergenic	Intergenic	-118164	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
97956	chr17	45234451	45235000	+	0	NA	intron (NM_005892, intron 6 of 26)	intron (NM_005892, intron 6 of 26)	12840	NM_005892	752		NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin like 1	protein-coding
14966	chr1	147949601	147949980	+	0	NA	intron (NM_016334, intron 5 of 13)	SVA_D|Retroposon|SVA	21370	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
126709	chr2	30169501	30169800	+	0	NA	Intergenic	Intergenic	-17784	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
189392	chr5	172736351	172736650	+	0	NA	Intergenic	MIRb|SINE|MIR	-19003	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
157750	chr22	46672221	46672480	+	0	NA	intron (NM_001366660, intron 13 of 17)	intron (NM_001366660, intron 13 of 17)	51964	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
229836	chr9	125821401	125821600	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	73317	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
49612	chr12	27779801	27781230	+	0	NA	promoter-TSS (NM_001146221)	promoter-TSS (NM_001146221)	-279	NM_001146221	100287284		NM_001146221	ENSG00000205693	MANSC4	-	MANSC domain containing 4	protein-coding
83490	chr16	27411551	27411850	+	0	NA	intron (NM_181079, intron 2 of 9)	AluSx1|SINE|Alu	9526	NM_181078	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
143065	chr20	21514601	21515000	+	0	NA	promoter-TSS (NM_002509)	promoter-TSS (NM_002509)	-736	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
102379	chr17	75570001	75570400	+	0	NA	exon (NM_001031803, exon 15 of 26)	exon (NM_001031803, exon 15 of 26)	-17858	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
147751	chr20	62412301	62412730	+	0	NA	intron (NM_080833, intron 13 of 13)	intron (NM_080833, intron 13 of 13)	-5232	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
232377	chr9	135938551	135938650	+	0	NA	intron (NM_016172, intron 8 of 9)	intron (NM_016172, intron 8 of 9)	22773	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
174188	chr4	36337101	36337300	+	0	NA	intron (NR_165630, intron 10 of 10)	intron (NR_165630, intron 10 of 10)	55584	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
212241	chr7	121373771	121373930	+	0	NA	intron (NM_001040020, intron 3 of 9)	AluY|SINE|Alu	22458	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
65436	chr14	51246051	51246350	+	0	NA	intron (NM_030755, intron 3 of 7)	intron (NM_030755, intron 3 of 7)	5953	NM_030755	81542		NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
45843	chr11	119380671	119382800	+	0	NA	promoter-TSS (NR_034160)	promoter-TSS (NR_034160)	-43	NR_034160	100499227		NR_034160		USP2-AS1	THY1-AS1|gLINC	USP2 antisense RNA 1	ncRNA
119425	chr19	40305251	40305600	+	0	NA	Intergenic	Intergenic	-20080	NM_001626	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
138641	chr2	210475371	210475800	+	0	NA	intron (NM_001136574, intron 2 of 9)	AluJr|SINE|Alu	1120	NM_001136574	10314		NM_006055	ENSG00000115365	LANCL1	GPR69A|p40	LanC like glutathione S-transferase 1	protein-coding
109702	chr19	1057021	1057550	+	0	NA	intron (NM_019112, intron 34 of 46)	intron (NM_019112, intron 34 of 46)	-8674	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
146141	chr20	48662951	48663650	+	0	NA	intron (NM_020820, intron 15 of 39)	MIR3|SINE|MIR	164699	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
89770	chr16	89465271	89466150	+	0	NA	intron (NM_001256182, intron 1 of 13)	AluY|SINE|Alu	24851	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
182882	chr5	70026651	70026750	+	0	NA	intron (NM_022978, intron 2 of 2).5	AluJr|SINE|Alu	1449	NM_021967	8293		NM_021967	ENSG00000172058	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A	protein-coding
74754	chr15	63223501	63223700	+	0	NA	intron (NM_016530, intron 1 of 7)	Tigger3c|DNA|TcMar-Tigger	33994	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
32020	chr10	101010301	101010500	+	0	NA	exon (NM_001195263, exon 15 of 17)	exon (NM_001195263, exon 15 of 17)	7903	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
209354	chr7	76270571	76270730	+	0	NA	intron (NM_001291831, intron 11 of 15)	AluSx|SINE|Alu	-32023	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
234875	chrX	29333821	29334080	+	0	NA	intron (NM_014271, intron 3 of 10)	SVA_E|Retroposon|SVA	-240328	NR_049877	100847047		NR_049877	ENSG00000264090	MIR4666B	-	microRNA 4666b	ncRNA
66691	chr14	64178851	64179330	+	0	NA	intron (NM_015180, intron 96 of 114)	AluJr4|SINE|Alu	-35054	NM_182913	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
234340	chrX	15142221	15142750	+	0	NA	Intergenic	Intergenic	127598	NM_024087	140462		NM_024087	ENSG00000102048	ASB9	-	ankyrin repeat and SOCS box containing 9	protein-coding
218779	chr8	58988351	58988650	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	130647	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
144555	chr20	35735271	35735430	+	0	NA	intron (NR_136587, intron 4 of 4)	intron (NR_136587, intron 4 of 4)	6910	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
5907	chr1	26831071	26831400	+	0	NA	intron (NM_032283, intron 1 of 7)	L2a|LINE|L2	4547	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
176735	chr4	101342871	101343230	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	4476	NM_001130691	5530		NM_000944	ENSG00000138814	PPP3CA	ACCIID|CALN|CALNA|CALNA1|CCN1|CNA1|DEE91|IECEE|IECEE1|PPP2B	protein phosphatase 3 catalytic subunit alpha	protein-coding
86031	chr16	57535131	57537370	+	0	NA	intron (NM_033212, intron 1 of 8)	CpG	321	NM_033212	92922		NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
76216	chr15	73920171	73921200	+	0	NA	intron (NR_040068, intron 1 of 2)	MER41B|LTR|ERV1	-5777	NM_005576	4016		NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase like 1	protein-coding
208995	chr7	74254151	74255580	+	0	NA	promoter-TSS (NM_001278791)	promoter-TSS (NM_001278791)	-407	NM_002914	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
100840	chr17	64122101	64122550	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	7819	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
77413	chr15	83284321	83284830	+	0	NA	promoter-TSS (NM_001717)	promoter-TSS (NM_001717)	89	NM_001717	646		NM_001717	ENSG00000169594	BNC1	BNC|BSN1|HsT19447|POF16|bn1	basonuclin zinc finger protein 1	protein-coding
232520	chr9	136324201	136324400	+	0	NA	non-coding (NR_026964, exon 1 of 1)	non-coding (NR_026964, exon 1 of 1)	3023	NR_026964	26102		NR_026964	ENSG00000262075	DKFZP434A062	-	uncharacterized LOC26102	ncRNA
85702	chr16	56589051	56589750	+	0	NA	promoter-TSS (NM_005954)	promoter-TSS (NM_005954)	-128	NM_005954	4504		NM_005954	ENSG00000087250	MT3	GIF|GIFB|GRIF|ZnMT3	metallothionein 3	protein-coding
189143	chr5	171316101	171316300	+	0	NA	Intergenic	CpG	6952	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
100375	chr17	60119951	60120930	+	0	NA	Intergenic	CpG	-17521	NR_027408	653653		NR_027408	ENSG00000293358	LOC653653	-	adaptor related protein complex 1 subunit sigma 2 pseudogene	pseudo
2045	chr1	7783351	7785350	+	0	NA	promoter-TSS (NM_001289861)	promoter-TSS (NM_001289861)	59	NM_001377275	8863		NM_016831	ENSG00000049246	PER3	FASPS3|GIG13	period circadian regulator 3	protein-coding
58099	chr12	124737521	124737780	+	0	NA	Intergenic	Intergenic	102021	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
37223	chr11	14446871	14447230	+	0	NA	Intergenic	Intergenic	52761	NM_001144061	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
102073	chr17	74951451	74952430	+	0	NA	exon (NM_030630, exon 18 of 19)	exon (NM_030630, exon 18 of 19)	16042	NM_001272005	347741		NM_178233	ENSG00000182938	OTOP3	-	otopetrin 3	protein-coding
187550	chr5	142777951	142778250	+	0	NA	intron (NM_001349547, intron 1 of 21)	L2|LINE|L2	6873	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
96119	chr17	39644221	39644700	+	0	NA	intron (NM_001165938, intron 1 of 13)	MIRb|SINE|MIR	7316	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
125219	chr2	10325521	10325780	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	-4513	NM_001258357	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
181178	chr5	39080671	39081300	+	0	NA	Intergenic	L1MEd|LINE|L1	-6586	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
80333	chr16	2461901	2462100	+	0	NA	intron (NM_025108, intron 5 of 9)	intron (NM_025108, intron 5 of 9)	1891	NM_025108	80178		NM_025108	ENSG00000162062	TEDC2	C16orf59	tubulin epsilon and delta complex 2	protein-coding
36426	chr11	4392851	4393930	+	0	NA	intron (NM_003141, intron 1 of 6)	intron (NM_003141, intron 1 of 6)	312	NM_003141	6737		NM_003141	ENSG00000132109	TRIM21	RNF81|RO52|Ro/SSA|SSA|SSA1	tripartite motif containing 21	protein-coding
25528	chr10	7349671	7349860	+	0	NA	intron (NM_001029880, intron 4 of 20)	intron (NM_001029880, intron 4 of 20)	59576	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
196306	chr6	43055301	43056030	+	0	NA	intron (NM_015950, intron 5 of 6)	intron (NM_015950, intron 5 of 6)	-1814	NM_001374874	9820		NM_014780	ENSG00000044090	CUL7	3M1|CUL-7|KIAA0076|dJ20C7.5	cullin 7	protein-coding
87068	chr16	68368251	68368850	+	0	NA	intron (NM_018667, intron 3 of 8)	intron (NM_018667, intron 3 of 8)	57436	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
57428	chr12	121886571	121886730	+	0	NA	intron (NM_001171993, intron 1 of 15)	L1MC4|LINE|L1	1961	NM_001171993	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
46444	chr11	128084221	128084930	+	0	NA	Intergenic	L1PA14|LINE|L1	-124191	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
163829	chr3	52453751	52454080	+	0	NA	intron (NM_003280, intron 1 of 5)	intron (NM_003280, intron 1 of 5)	126	NM_003280	7134		NM_003280	ENSG00000114854	TNNC1	CMD1Z|CMH13|TN-C|TNC|TNNC	troponin C1, slow skeletal and cardiac type	protein-coding
211677	chr7	106347601	106347800	+	0	NA	Intergenic	L1MEf|LINE|L1	-62717	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
126631	chr2	28810071	28811350	+	0	NA	promoter-TSS (NM_182756)	promoter-TSS (NM_182756)	-124	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
92829	chr17	16201021	16201480	+	0	NA	intron (NM_006311, intron 1 of 45)	intron (NM_006311, intron 1 of 45)	-6611	NM_001190438	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
108145	chr18	62537351	62537650	+	0	NA	intron (NM_017742, intron 1 of 13)	L1MB4|LINE|L1	14475	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
224618	chr9	20512951	20513050	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	-10658	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
147939	chr20	62934671	62935030	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	3054	NM_080797	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
78985	chr15	101675871	101676100	+	0	NA	intron (NM_152334, intron 12 of 18)	intron (NM_152334, intron 12 of 18)	-23594	NM_001307960	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
41150	chr11	65596651	65597080	+	0	NA	TTS (NM_002419)	TTS (NM_002419)	-1065	NM_033348	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
159841	chr3	16506951	16507250	+	0	NA	intron (NM_015150, intron 1 of 9)	MIR|SINE|MIR	6599	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
24500	chr1	244443621	244444000	+	0	NA	intron (NM_001365073, intron 1 of 12)	MIR|SINE|MIR	8099	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
29967	chr10	73628221	73628480	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2369	NM_001378208	159195		NM_152586	ENSG00000166348	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
149840	chr21	35039801	35040650	+	0	NA	promoter-TSS (NR_026812)	promoter-TSS (NR_026812)	-799	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
67852	chr14	74083851	74085550	+	0	NA	promoter-TSS (NM_001372005)	promoter-TSS (NM_001372005)	-247	NM_005589	4329		NM_005589	ENSG00000119711	ALDH6A1	MMSADHA|MMSDH	aldehyde dehydrogenase 6 family member A1	protein-coding
217121	chr8	25177871	25178030	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-6739	NM_001322810	80005		NM_024940	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
149375	chr21	30718171	30718530	+	0	NA	TTS (NM_001164435)	TTS (NM_001164435)	427	NM_001164435	100288323		NM_001164435	ENSG00000231068	KRTAP21-3	-	keratin associated protein 21-3	protein-coding
130158	chr2	75416671	75417230	+	0	NA	Intergenic	Intergenic	-107118	NR_110281	101927884		NR_110281	ENSG00000231172	EVA1A-AS	EVA1A-AS1	EVA1A antisense RNA	ncRNA
116934	chr19	18840771	18841450	+	0	NA	intron (NM_001297549, intron 1 of 23)	intron (NM_001297549, intron 1 of 23)	9151	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
228008	chr9	95571871	95572050	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-54989	NM_001083602	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
225083	chr9	33298301	33298750	+	0	NA	intron (NM_147134, intron 2 of 15)	AluJo|SINE|Alu	8009	NM_147134	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
31945	chr10	100655771	100655950	+	0	NA	Intergenic	CpG	-79536	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
3705	chr1	16583571	16584130	+	0	NA	intron (NM_017940, intron 12 of 28)	intron (NM_017940, intron 12 of 28)	29714	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
204574	chr7	5235121	5235380	+	0	NA	Intergenic	AluSx1|SINE|Alu	20981	NM_001033520	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
165189	chr3	72449651	72451030	+	0	NA	Intergenic	Intergenic	-3717	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
224485	chr9	16726921	16727180	+	0	NA	non-coding (NR_151723, exon 2 of 3)	non-coding (NR_151723, exon 2 of 3)	236	NR_151723	111216284		NR_151723	ENSG00000234779	BNC2-AS1	-	BNC2 antisense RNA 1	ncRNA
237173	chrX	107678401	107679530	+	0	NA	Intergenic	Intergenic	37543	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
85348	chr16	50201571	50202230	+	0	NA	intron (NM_001040284, intron 2 of 12)	FLAM_C|SINE|Alu	48594	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
124393	chr19	58398451	58399100	+	0	NA	Intergenic	Intergenic	-1428	NR_149054	110806301		NR_149054	ENSG00000268307	LINC02560	-	long intergenic non-protein coding RNA 2560	ncRNA
173721	chr4	15882571	15882940	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	55985	NM_005130	9982		NM_005130	ENSG00000137440	FGFBP1	FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17	fibroblast growth factor binding protein 1	protein-coding
59723	chr13	29818151	29818450	+	0	NA	intron (NM_007106, intron 1 of 4)	intron (NM_007106, intron 1 of 4)	32317	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
159347	chr3	13165541	13165650	+	0	NA	intron (NM_001376938, intron 1 of 15)	intron (NM_001376938, intron 1 of 15)	-92166	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
192272	chr6	20404501	20405250	+	0	NA	intron (NM_001243076, intron 1 of 6)	intron (NM_001243076, intron 1 of 6)	1196	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
53395	chr12	64696151	64696980	+	0	NA	non-coding (NR_040718, exon 4 of 4)	non-coding (NR_040718, exon 4 of 4)	62841	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
47962	chr12	6869101	6870450	+	0	NA	intron (NM_001159287, intron 5 of 6)	intron (NM_001159287, intron 5 of 6)	1661	NM_001258026	7167		NM_000365	ENSG00000111669	TPI1	HEL-S-49|TIM|TPI|TPID	triosephosphate isomerase 1	protein-coding
102346	chr17	75502851	75502950	+	0	NA	exon (NM_020753, exon 18 of 20)	exon (NM_020753, exon 18 of 20)	4352	NR_106843	102466911		NR_106843	ENSG00000284595	MIR6785	hsa-mir-6785	microRNA 6785	ncRNA
227970	chr9	95127521	95127820	+	0	NA	intron (NM_001243743, intron 8 of 14)	intron (NM_001243743, intron 8 of 14)	-41576	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA
226265	chr9	68239851	68240150	+	0	NA	Intergenic	Intergenic	-1889	NM_001286836	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
159223	chr3	12905271	12905430	+	0	NA	intron (NM_014869, intron 12 of 13)	intron (NM_014869, intron 12 of 13)	-20139	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
127018	chr2	36964671	36964830	+	0	NA	intron (NM_003162, intron 1 of 17)	L2a|LINE|L2	1786	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
158933	chr3	10136001	10136530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-5513	NM_001354723	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
179011	chr4	164012551	164012880	+	0	NA	intron (NM_001166373, intron 2 of 7)	L1MA4|LINE|L1	184996	NM_012403	23520		NM_012403		ANP32CP	ANP32C|PP32R1	acidic nuclear phosphoprotein 32 family member C, pseudogene	pseudo
5612	chr1	26126411	26127630	+	0	NA	Intergenic	AluSq2|SINE|Alu	15196	NM_152835	149420		NM_152835	ENSG00000175087	PDIK1L	CLIK1L|STK35L2	PDLIM1 interacting kinase 1 like	protein-coding
87994	chr16	80725071	80725230	+	0	NA	intron (NM_152342, intron 1 of 6)	L2b|LINE|L2	79448	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
151232	chr21	45268851	45269430	+	0	NA	intron (NM_133635, intron 7 of 8)	SVA_D|Retroposon|SVA	18755	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
104526	chr17	81244251	81245400	+	0	NA	TTS (NM_001037984)	TTS (NM_001037984)	4911	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
81847	chr16	11596801	11598100	+	0	NA	Intergenic	MIR|SINE|MIR	-9984	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
20692	chr1	200561471	200561830	+	0	NA	intron (NM_001305792, intron 23 of 27)	intron (NM_001305792, intron 23 of 27)	57188	NM_001305792	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
181062	chr5	36244251	36244550	+	0	NA	Intergenic	MIRb|SINE|MIR	-2121	NM_153013	133686		NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
53360	chr12	64658871	64659400	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-36530	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
57646	chr12	122520651	122521100	+	0	NA	intron (NR_036434, intron 3 of 10)	intron (NR_036434, intron 3 of 10)	6061	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
206828	chr7	37311321	37312050	+	0	NA	intron (NM_014800, intron 4 of 21)	intron (NM_014800, intron 4 of 21)	41983	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
28384	chr10	47340351	47340770	+	0	NA	Intergenic	Intergenic	-7803	NM_002900	5949		NM_002900	ENSG00000265203	RBP3	D10S64|D10S65|D10S66|IRBP|RBPI|RP66	retinol binding protein 3	protein-coding
41411	chr11	66046551	66046650	+	0	NA	intron (NM_033036, intron 1 of 2)	intron (NM_033036, intron 1 of 2)	2561	NM_033036	89792		NM_033036	ENSG00000175229	GAL3ST3	GAL3ST-3|GAL3ST2	galactose-3-O-sulfotransferase 3	protein-coding
35487	chr11	1513651	1514180	+	0	NA	Intergenic	HAL1|LINE|L1	-27136	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
45419	chr11	118362771	118362930	+	0	NA	intron (NM_004788, intron 1 of 19)	MLT1K|LTR|ERVL-MaLR	3250	NM_004788	9354		NM_004788	ENSG00000110344	UBE4A	E4|NEDHMS|UBOX2|UFD2	ubiquitination factor E4A	protein-coding
213697	chr7	140180351	140180650	+	0	NA	TTS (NR_024451)	TTS (NR_024451)	3239	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
95144	chr17	35068321	35068580	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	-4743	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
214245	chr7	148880551	148880900	+	0	NA	intron (NM_001203248, intron 1 of 19)	intron (NM_001203248, intron 1 of 19)	2760	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
12371	chr1	101251371	101251930	+	0	NA	Intergenic	Intergenic	14631	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
40720	chr11	64805171	64805730	+	0	NA	intron (NM_001370259, intron 8 of 9)	intron (NM_001370259, intron 8 of 9)	-2236	NM_001307990	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
157882	chr22	49724821	49725500	+	0	NA	Intergenic	CpG	-67641	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
59881	chr13	30676601	30677330	+	0	NA	Intergenic	Intergenic	-36513	NM_001204406	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
144632	chr20	35943071	35943430	+	0	NA	intron (NM_016436, intron 17 of 17)	AluSx|SINE|Alu	11252	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
96317	chr17	39984371	39984530	+	0	NA	exon (NM_002809, exon 2 of 12)	exon (NM_002809, exon 2 of 12)	3643	NM_002809	5709		NM_002809	ENSG00000108344	PSMD3	P58|RPN3|S3|TSTA2	proteasome 26S subunit, non-ATPase 3	protein-coding
183198	chr5	76074501	76074800	+	0	NA	Intergenic	Intergenic	-8733	NM_001297716	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
12902	chr1	110406851	110408350	+	0	NA	promoter-TSS (NR_102697)	promoter-TSS (NR_102697)	94	NM_001382293	10542		NM_006402	ENSG00000134248	LAMTOR5	HBXIP|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding
36648	chr11	7986121	7987600	+	0	NA	promoter-TSS (NM_003754)	promoter-TSS (NM_003754)	-477	NM_003754	8665		NM_003754	ENSG00000175390	EIF3F	EIF3S5|MRT67|eIF3-p47	eukaryotic translation initiation factor 3 subunit F	protein-coding
74274	chr15	57340701	57340950	+	0	NA	Intergenic	Intergenic	21687	NR_120337	101928611		NR_120337	ENSG00000260172	LINC01413	-	long intergenic non-protein coding RNA 1413	ncRNA
839	chr1	1595601	1595800	+	0	NA	Intergenic	Intergenic	-3733	NR_147951	105378586		NR_147951		LOC105378586	-	uncharacterized LOC105378586	ncRNA
90696	chr17	1745021	1745480	+	0	NA	intron (NM_001165920, intron 3 of 9).2	intron (NM_001165920, intron 3 of 9).2	2224	NM_001165920	5345		NM_000934	ENSG00000167711	SERPINF2	A2AP|AAP|ALPHA-2-PI|API|PLI|alpha2AP	serpin family F member 2	protein-coding
182750	chr5	68281951	68282880	+	0	NA	intron (NM_181523, intron 7 of 15)	intron (NM_181523, intron 7 of 15)	-6104	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
79718	chr16	1318071	1318750	+	0	NA	intron (NM_194259, intron 5 of 7)	intron (NM_194259, intron 5 of 7)	8774	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
59188	chr13	22068001	22068200	+	0	NA	Intergenic	Intergenic	-142185	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
123625	chr19	54573551	54573850	+	0	NA	promoter-TSS (NM_001130917)	promoter-TSS (NM_001130917)	-90	NM_001130917	11027		NM_006866	ENSG00000239998	LILRA2	CD85H|ILT1|LIR-7|LIR7	leukocyte immunoglobulin like receptor A2	protein-coding
195067	chr6	35512771	35512930	+	0	NA	promoter-TSS (NM_003322)	promoter-TSS (NM_003322)	46	NM_003322	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
5281	chr1	25098751	25098850	+	0	NA	Intergenic	Intergenic	75297	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
237720	chrX	125204851	125205180	+	0	NA	Intergenic	Intergenic	-114856	NM_001195272	100129520		NM_001195272	ENSG00000282815	TEX13C	-	TEX13 family member C	protein-coding
136985	chr2	190520301	190520980	+	0	NA	intron (NR_136298, intron 2 of 8)	L2a|LINE|L2	14082	NM_001142645	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
23230	chr1	227751551	227752150	+	0	NA	intron (NR_136655, intron 2 of 5)	AluY|SINE|Alu	16155	NM_001323934	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
183166	chr5	75239351	75239650	+	0	NA	Intergenic	MER6|DNA|TcMar-Tigger	-2622	NM_001164443	256006		NM_001164443	ENSG00000145700	ANKRD31	-	ankyrin repeat domain 31	protein-coding
166761	chr3	122271371	122272130	+	0	NA	intron (NM_001178065, intron 4 of 6)	L1MB8|LINE|L1	-53498	NM_005213	1475		NM_005213	ENSG00000121552	CSTA	AREI|PSS4|STF1|STFA	cystatin A	protein-coding
228464	chr9	99848601	99849000	+	0	NA	intron (NM_173200, intron 8 of 8)	intron (NM_173200, intron 8 of 8)	26915	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
37706	chr11	30281851	30282880	+	0	NA	Intergenic	L1PA16|LINE|L1	-40739	NM_152316	120534		NM_152316	ENSG00000152219	ARL14EP	ARF7EP|C11orf46|dJ299F11.1	ADP ribosylation factor like GTPase 14 effector protein	protein-coding
33504	chr10	119139251	119140330	+	0	NA	TTS (NM_213649)	TTS (NM_213649)	25902	NR_110305	119559		NM_178867	ENSG00000183605	SFXN4	BCRM1|COXPD18|SLC56A4	sideroflexin 4	protein-coding
27617	chr10	32931321	32931780	+	0	NA	intron (NM_133376, intron 3 of 15)	intron (NM_133376, intron 3 of 15)	4008	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
110456	chr19	2003671	2004230	+	0	NA	intron (NM_017797, intron 1 of 8)	MER4A1_|LTR|ERV1	11764	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
224992	chr9	33110001	33110480	+	0	NA	TTS (NM_001497)	TTS (NM_001497)	1548	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
152550	chr22	20999351	21000800	+	0	NA	exon (NM_001008695, exon 5 of 5)	exon (NM_001008695, exon 5 of 5)	-1847	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
3469	chr1	15952671	15953250	+	0	NA	intron (NM_001324138, intron 2 of 14)	MLT1H|LTR|ERVL-MaLR	23141	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
92560	chr17	8986251	8986350	+	0	NA	Intergenic	Intergenic	-20588	NM_001251853	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
196581	chr6	44172671	44173230	+	0	NA	exon (NM_007058, exon 6 of 23)	exon (NM_007058, exon 6 of 23)	14130	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105471	chr17	83064201	83064400	+	0	NA	Intergenic	Intergenic	-12490	NM_001009905	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
49435	chr12	24778901	24779130	+	0	NA	Intergenic	Intergenic	123207	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
88202	chr16	81797451	81797780	+	0	NA	intron (NM_002661, intron 2 of 32)	L2b|LINE|L2	18324	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
94885	chr17	31533471	31534630	+	0	NA	promoter-TSS (NR_039877)	promoter-TSS (NR_039877)	-833	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
212823	chr7	130434271	130434430	+	0	NA	intron (NM_001257160, intron 1 of 2)	L1MD|LINE|L1	6666	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
145274	chr20	40990551	40990930	+	0	NA	intron (NR_145525, intron 1 of 2)	intron (NR_145525, intron 1 of 2)	10027	NR_145525	100128988		NR_145524		LOC100128988	-	uncharacterized LOC100128988	ncRNA
197138	chr6	59521471	59521630	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1560104	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
56342	chr12	112979101	112980030	+	0	NA	intron (NM_016817, intron 1 of 10)	MIR|SINE|MIR	1046	NM_002535	4939		NM_002535	ENSG00000111335	OAS2	-	2'-5'-oligoadenylate synthetase 2	protein-coding
89250	chr16	88649901	88652500	+	0	NA	promoter-TSS (NM_000101)	promoter-TSS (NM_000101)	-147	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
178508	chr4	150826071	150826430	+	0	NA	intron (NM_001367550, intron 30 of 56)	Tigger2|DNA|TcMar-Tigger	189017	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
4046	chr1	18960601	18960800	+	0	NA	Intergenic	L2a|LINE|L2	-4024	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
175583	chr4	75663251	75664000	+	0	NA	intron (NM_203505, intron 1 of 11)	AluSg7|SINE|Alu	9534	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
116162	chr19	17396201	17396750	+	0	NA	Intergenic	LTR49|LTR|ERV1	9155	NM_004335	684		NM_004335	ENSG00000130303	BST2	CD317|HM1.24|TETHERIN	bone marrow stromal cell antigen 2	protein-coding
164943	chr3	71233401	71233600	+	0	NA	intron (NM_001012505, intron 5 of 6)	AluSq2|SINE|Alu	11577	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
142551	chr20	5126001	5127300	+	0	NA	promoter-TSS (NM_002592)	promoter-TSS (NM_002592)	-28	NM_002592	5111		NM_002592	ENSG00000132646	PCNA	ATLD2	proliferating cell nuclear antigen	protein-coding
92595	chr17	9522171	9522330	+	0	NA	intron (NR_033656, intron 2 of 5)	intron (NR_033656, intron 2 of 5)	53570	NM_004853	9482		NM_004853	ENSG00000170310	STX8	CARB	syntaxin 8	protein-coding
232871	chr9	136822001	136822400	+	0	NA	intron (NM_024718, intron 1 of 14)	intron (NM_024718, intron 1 of 14)	-8757	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
84832	chr16	31109771	31110430	+	0	NA	exon (NM_001271926, exon 5 of 10)	exon (NM_001271926, exon 5 of 10)	1714	NM_001122957	10295		NM_005881	ENSG00000103507	BCKDK	BCKDKD|BDK	branched chain keto acid dehydrogenase kinase	protein-coding
166490	chr3	114301371	114301530	+	0	NA	intron (NM_173799, intron 3 of 3)	intron (NM_173799, intron 3 of 3)	7422	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
205255	chr7	8127951	8128050	+	0	NA	exon (NM_001136020, exon 13 of 14)	exon (NM_001136020, exon 13 of 14)	134167	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
60623	chr13	42278901	42279350	+	0	NA	intron (NM_016248, intron 1 of 12)	L1MEc|LINE|L1	6973	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
80215	chr16	2163871	2164830	+	0	NA	intron (NM_032271, intron 2 of 20)	CpG	8568	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
32390	chr10	102423701	102424100	+	0	NA	TTS (NM_024326)	TTS (NM_024326)	-3966	NM_001270965	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
75590	chr15	67089921	67090280	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	24498	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
21160	chr1	203731921	203732180	+	0	NA	TTS (NR_046213)	TTS (NR_046213)	1473	NR_046213	84719		NM_032633		LINC00260	C1orf217|NCRNA00260	long intergenic non-protein coding RNA 260	ncRNA
208482	chr7	67190351	67190650	+	0	NA	intron (NM_018264, intron 14 of 15)	intron (NM_018264, intron 14 of 15)	-76103	NR_039793	100616310		NR_039793	ENSG00000266525	MIR4650-1	-	microRNA 4650-1	ncRNA
222481	chr8	140302101	140302300	+	0	NA	intron (NR_164662, intron 9 of 22)	intron (NR_164662, intron 9 of 22)	155544	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
21408	chr1	205294201	205294600	+	0	NA	Intergenic	Intergenic	27345	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
124099	chr19	55649471	55650230	+	0	NA	intron (NM_001370467, intron 4 of 5)	intron (NM_001370467, intron 4 of 5)	1638	NM_001370471	29903		NM_013301	ENSG00000173581	CCDC106	HSU79303|ZNF581	coiled-coil domain containing 106	protein-coding
58329	chr12	131393321	131393580	+	0	NA	Intergenic	Intergenic	45980	NR_103736	338797		NM_001025466		LINC02370	-	long intergenic non-protein coding RNA 2370	ncRNA
218746	chr8	58864521	58865080	+	0	NA	intron (NM_014729, intron 3 of 8)	intron (NM_014729, intron 3 of 8)	-204947	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
77849	chr15	88658501	88658700	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	19584	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
32365	chr10	102393571	102395000	+	0	NA	promoter-TSS (NM_001077494)	promoter-TSS (NM_001077494)	175	NM_001288724	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
49957	chr12	40168551	40169050	+	0	NA	TTS (NR_146526)	TTS (NR_146526)	12561	NR_146526	105369734		NR_146526		LINC02471	-	long intergenic non-protein coding RNA 2471	ncRNA
185641	chr5	131533871	131534330	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	101129	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
129206	chr2	68209351	68209850	+	0	NA	intron (NM_000945, intron 2 of 5)	AluJb|SINE|Alu	42932	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
56708	chr12	120093451	120095030	+	0	NA	TTS (NM_001167606)	TTS (NM_001167606)	22513	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
211858	chr7	111009721	111010180	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-81056	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
21195	chr1	203841701	203842450	+	0	NA	intron (NM_001376350, intron 12 of 17)	SVA_B|Retroposon|SVA	-19524	NM_001304464	6635		NM_003094	ENSG00000182004	SNRPE	HYPT11|SME|Sm-E|snRNP-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
1452	chr1	2656901	2657280	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-24074	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
75565	chr15	67042701	67043100	+	0	NA	intron (NR_135686, intron 2 of 5)	MIRc|SINE|MIR	21282	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
124142	chr19	55696101	55696300	+	0	NA	TTS (NM_001130071)	TTS (NM_001130071)	19575	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
201412	chr6	146338821	146338900	+	0	NA	intron (NM_001278065, intron 4 of 9)	intron (NM_001278065, intron 4 of 9)	-204973	NM_006834	10981		NM_006834	ENSG00000118508	RAB32	-	RAB32, member RAS oncogene family	protein-coding
186220	chr5	134385901	134386300	+	0	NA	intron (NM_003337, intron 4 of 5)	AluSx|SINE|Alu	14531	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
49532	chr12	26114051	26114900	+	0	NA	Intergenic	CpG	10562	NM_030762	79365		NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|FNSS1|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding
74122	chr15	55196371	55197550	+	0	NA	promoter-TSS (NM_016304)	promoter-TSS (NM_016304)	-19	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
13428	chr1	114282601	114283130	+	0	NA	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	-128996	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
112326	chr19	5908821	5909330	+	0	NA	exon (NM_001017921, exon 2 of 2)	exon (NM_001017921, exon 2 of 2)	4203	NM_001017921	400673		NM_001017921	ENSG00000187650	VMAC	-	vimentin type intermediate filament associated coiled-coil protein	protein-coding
193527	chr6	30591071	30591580	+	0	NA	3' UTR (NM_001025091, exon 25 of 25).2	3' UTR (NM_001025091, exon 25 of 25).2	6993	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
145341	chr20	41135151	41135800	+	0	NA	intron (NR_109889, intron 2 of 6)	intron (NR_109889, intron 2 of 6)	-2068	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
155340	chr22	38227351	38227650	+	0	NA	intron (NM_001195071, intron 5 of 8)	intron (NM_001195071, intron 5 of 8)	-2780	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
161406	chr3	41223721	41224150	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	24430	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
155875	chr22	39497751	39498050	+	0	NA	Intergenic	AluSz|SINE|Alu	-2200	NM_001304564	54471		NM_013298	ENSG00000100335	MIEF1	AltMIEF1|D3A|HSU79252|L0R8F8|MID51|MIEF1-MP|OPA14|SMCR7L|dJ1104E15.3	mitochondrial elongation factor 1	protein-coding
4315	chr1	20361801	20362100	+	0	NA	non-coding (NR_033887, exon 12 of 12)	non-coding (NR_033887, exon 12 of 12)	66844	NR_033887	339505		NR_033887		LINC01141	-	long intergenic non-protein coding RNA 1141	ncRNA
183007	chr5	72611171	72611350	+	0	NA	intron (NR_105007, intron 1 of 2)	intron (NR_105007, intron 1 of 2)	49409	NR_105007	121232377		NR_105007		TNPO1-DT	LINC02056	TNPO1 divergent transcript	ncRNA
92492	chr17	8875321	8876330	+	0	NA	Intergenic	Intergenic	-8148	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
21694	chr1	206728451	206728930	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	41913	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
216848	chr8	22606071	22606300	+	0	NA	intron (NM_021174, intron 3 of 20)	intron (NM_021174, intron 3 of 20)	1143	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
1630	chr1	3746921	3748030	+	0	NA	promoter-TSS (NR_033708)	promoter-TSS (NR_033708)	-102	NR_033709	57212		NM_207306	ENSG00000293478	GFOD3P	KIAA0495|PDAM|TP73-AS1	Gfo/Idh/MocA-like oxidoreductase domain containing 3, pseudogene	pseudo
229164	chr9	114503071	114503450	+	0	NA	promoter-TSS (NM_001083885)	promoter-TSS (NM_001083885)	-45	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
114546	chr19	12872821	12873680	+	0	NA	intron (NM_014975, intron 24 of 25)	intron (NM_014975, intron 24 of 25)	8199	NM_001375	1777		NM_001375	ENSG00000105612	DNASE2	AIPCS|DNASE2A|DNL|DNL2	deoxyribonuclease 2, lysosomal	protein-coding
226189	chr9	65164251	65164350	+	0	NA	intron (NR_160670, intron 3 of 3).3	intron (NR_160670, intron 3 of 3).3	19367	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
166083	chr3	109005651	109005750	+	0	NA	intron (NM_014429, intron 18 of 27)	intron (NM_014429, intron 18 of 27)	-51821	NM_005459	9626		NM_005459	ENSG00000138472	GUCA1C	GCAP3	guanylate cyclase activator 1C	protein-coding
15611	chr1	150613421	150614430	+	0	NA	Intergenic	Intergenic	15208	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
11619	chr1	91714851	91715150	+	0	NA	intron (NR_036634, intron 13 of 17)	intron (NR_036634, intron 13 of 17)	171151	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
93477	chr17	18860321	18861200	+	0	NA	intron (NM_001353100, intron 2 of 11)	intron (NM_001353100, intron 2 of 11)	1420	NM_001353096	5636		NM_002767	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase associated protein 2	protein-coding
89451	chr16	89004021	89004500	+	0	NA	Intergenic	CpG	-27053	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
81725	chr16	11294001	11294400	+	0	NA	Intergenic	AluSg4|SINE|Alu	12327	NR_031678	100313773		NR_031678	ENSG00000221801	MIR548H2	MIR548H-2|MIRN548H2	microRNA 548h-2	ncRNA
99797	chr17	51262871	51263030	+	0	NA	intron (NM_016001, intron 1 of 13)	intron (NM_016001, intron 1 of 13)	2404	NM_016001	51096		NM_016001	ENSG00000011260	UTP18	CGI-48|WDR50	UTP18 small subunit processome component	protein-coding
24229	chr1	236148371	236148730	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	6011	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
88862	chr16	87688221	87688680	+	0	NA	intron (NM_020655, intron 3 of 4)	intron (NM_020655, intron 3 of 4)	77536	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
204225	chr7	2533951	2534150	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	6976	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
152778	chr22	21811401	21811600	+	0	NA	intron (NM_138957, intron 1 of 7)	AluY|SINE|Alu	56145	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
26090	chr10	13165151	13165650	+	0	NA	intron (NM_182751, intron 2 of 19)	intron (NM_182751, intron 2 of 19)	3842	NM_018518	55388		NM_018518	ENSG00000065328	MCM10	CNA43|DNA43|IMD80|PRO2249	minichromosome maintenance 10 replication initiation factor	protein-coding
199060	chr6	111565951	111566330	+	0	NA	intron (NM_147686, intron 7 of 8)	intron (NM_147686, intron 7 of 8)	1139	NM_001164283	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
77919	chr15	89311251	89311830	+	0	NA	intron (NM_018193, intron 33 of 36)	L3|LINE|CR1	15270	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
224868	chr9	31302871	31303650	+	0	NA	Intergenic	L1MB2|LINE|L1	78230	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
22496	chr1	221735671	221736380	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	875	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
126566	chr2	28649371	28649930	+	0	NA	Intergenic	Intergenic	83293	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
209182	chr7	75396271	75397000	+	0	NA	intron (NM_198924, intron 1 of 4).2	AluSq|SINE|Alu	1006	NM_198853	378108		NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
75462	chr15	65868901	65870850	+	0	NA	intron (NM_004663, intron 1 of 4)	CpG	384	NM_001206836	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
163074	chr3	50078471	50079330	+	0	NA	Intergenic	Intergenic	-10019	NR_036627	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
157986	chr22	49845971	49846500	+	0	NA	Intergenic	Intergenic	-7609	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
68058	chr14	75253751	75254050	+	0	NA	Intergenic	AluSp|SINE|Alu	-24928	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
191738	chr6	13743101	13743530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-31480	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
76398	chr15	74628801	74629000	+	0	NA	intron (NM_001130028, intron 11 of 12)	intron (NM_001130028, intron 11 of 12)	13064	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
48894	chr12	12534251	12534550	+	0	NA	intron (NM_030640, intron 1 of 6)	intron (NM_030640, intron 1 of 6)	28463	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
26065	chr10	12756821	12756900	+	0	NA	intron (NM_153498, intron 3 of 10)	AluY|SINE|Alu	-31507	NR_031752	100313841		NR_031752	ENSG00000221331	MIR548Q	-	microRNA 548q	ncRNA
17025	chr1	156059371	156059730	+	0	NA	Intergenic	Intergenic	-1610	NM_020387	57111		NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
233694	chrX	1198021	1198350	+	0	NA	intron (NR_110830, intron 5 of 7).2	intron (NR_110830, intron 5 of 7).2	14464	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
95645	chr17	37849051	37849630	+	0	NA	intron (NR_024178, intron 5 of 6)	intron (NR_024178, intron 5 of 6)	35403	NR_024178	284100		NM_001129906	ENSG00000290810	YWHAEP7	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7	pseudo
176787	chr4	102508801	102509000	+	0	NA	intron (NM_001382625, intron 1 of 24)	intron (NM_001382625, intron 1 of 24)	-6414	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
73705	chr15	45119101	45119630	+	0	NA	TTS (NM_207581)	TTS (NM_207581)	3678	NM_001276265	90527		NM_144565	ENSG00000140254	DUOXA1	NIP|NUMBIP|mol	dual oxidase maturation factor 1	protein-coding
54284	chr12	89236471	89236630	+	0	NA	Intergenic	Intergenic	115951	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
229505	chr9	122267051	122267350	+	0	NA	intron (NM_001346339, intron 2 of 7)	AluSx1|SINE|Alu	2318	NR_144421	92399		NM_138777	ENSG00000148187	MRRF	MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding
175231	chr4	56960301	56960730	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	17091	NM_032313	84273		NM_032313	ENSG00000084092	NOA1	C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1	nitric oxide associated 1	protein-coding
8149	chr1	39398101	39399150	+	0	NA	intron (NM_012090, intron 52 of 92)	intron (NM_012090, intron 52 of 92)	-10448	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
142476	chr20	4289171	4289350	+	0	NA	Intergenic	L1PA3|LINE|L1	-39973	NM_000678	146		NM_000678	ENSG00000171873	ADRA1D	ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2	adrenoceptor alpha 1D	protein-coding
177463	chr4	113684521	113685000	+	0	NA	intron (NM_001321585, intron 2 of 19)	intron (NM_001321585, intron 2 of 19)	76978	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
168891	chr3	152317221	152317650	+	0	NA	intron (NR_164857, intron 3 of 10)	AluSz|SINE|Alu	18421	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
166389	chr3	113517201	113517400	+	0	NA	Intergenic	Intergenic	-2144	NM_001331078	152185		NM_144718	ENSG00000163611	SPICE1	CCDC52|SPICE	spindle and centriole associated protein 1	protein-coding
135443	chr2	161199951	161201080	+	0	NA	intron (NM_133484, intron 2 of 3)	intron (NM_133484, intron 2 of 3)	40087	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
23431	chr1	228408051	228408250	+	0	NA	TTS (NM_001134855)	TTS (NM_001134855)	-1315	NM_145214	81559		NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
79871	chr16	1526801	1527950	+	0	NA	intron (NM_014714, intron 19 of 30)	intron (NM_014714, intron 19 of 30)	-1303	NM_001256541	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
81917	chr16	11739971	11740400	+	0	NA	intron (NR_136674, intron 1 of 8)	intron (NR_136674, intron 1 of 8)	2672	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
134045	chr2	131123471	131123630	+	0	NA	intron (NM_001267064, intron 2 of 7)	AluSg|SINE|Alu	18703	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
65078	chr14	39428001	39428980	+	0	NA	intron (NM_203301, intron 1 of 3)	AluSz|SINE|Alu	4010	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
184332	chr5	96944601	96945130	+	0	NA	intron (NM_005575, intron 1 of 17)	MER4D|LTR|ERV1	8785	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
126598	chr2	28775221	28776050	+	0	NA	intron (NM_206876, intron 2 of 8)	AluJr|SINE|Alu	23805	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
100918	chr17	64465351	64465450	+	0	NA	intron (NM_001085423, intron 5 of 9)	intron (NM_001085423, intron 5 of 9)	16285	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
231120	chr9	129828971	129829550	+	0	NA	exon (NM_016520, exon 8 of 9)	exon (NM_016520, exon 8 of 9)	-5124	NM_000113	1861		NM_000113	ENSG00000136827	TOR1A	AMC5|DQ2|DYT1	torsin family 1 member A	protein-coding
10081	chr1	58814201	58814580	+	0	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	29239	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
224896	chr9	32509101	32509300	+	0	NA	intron (NM_014314, intron 1 of 17)	L1PA7|LINE|L1	16996	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
110571	chr19	2147121	2147380	+	0	NA	intron (NM_001374799, intron 1 of 31)	AluSp|SINE|Alu	4316	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
200070	chr6	130070551	130070880	+	0	NA	intron (NM_001007102, intron 11 of 21)	intron (NM_001007102, intron 11 of 21)	51071	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
147828	chr20	62737371	62737600	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	28649	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
131626	chr2	96967801	96968400	+	0	NA	intron (NM_001122646, intron 4 of 16)	intron (NM_001122646, intron 4 of 16)	18480	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
76156	chr15	72687721	72688330	+	0	NA	intron (NR_045566, intron 1 of 15)	Alu|SINE|Alu	1818	NM_033028	585		NM_033028	ENSG00000140463	BBS4	-	Bardet-Biedl syndrome 4	protein-coding
14792	chr1	146117371	146117750	+	0	NA	exon (NM_001039703, exon 25 of 86)	exon (NM_001039703, exon 25 of 86)	27244	NM_001302371	100132406		NM_001039703	ENSG00000271425	NBPF10	AB6|AG1|NBPF9	NBPF member 10	protein-coding
130523	chr2	85611371	85612700	+	0	NA	promoter-TSS (NM_001256728)	promoter-TSS (NM_001256728)	31	NM_001013649	388969		NM_001013649	ENSG00000168887	C2orf68	HCRCN81	chromosome 2 open reading frame 68	protein-coding
182578	chr5	65961501	65962030	+	0	NA	intron (NM_001253697, intron 1 of 25)	intron (NM_001253697, intron 1 of 25)	-16192	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
79178	chr16	306671	307030	+	0	NA	intron (NR_134879, intron 3 of 8)	intron (NR_134879, intron 3 of 8)	23686	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
96259	chr17	39849521	39849880	+	0	NA	intron (NM_183231, intron 1 of 5)	L1ME3|LINE|L1	14488	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
196233	chr6	42844321	42844580	+	0	NA	intron (NM_015349, intron 5 of 11)	AluY|SINE|Alu	23394	NM_015349	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
202843	chr6	159756301	159757430	+	0	NA	TTS (NM_004906)	TTS (NM_004906)	-5180	NM_005891	39		NM_005891	ENSG00000120437	ACAT2	-	acetyl-CoA acetyltransferase 2	protein-coding
163938	chr3	52710021	52710550	+	0	NA	3' UTR (NM_001193533, exon 15 of 15)	3' UTR (NM_001193533, exon 15 of 15)	4179	NM_014041	28972		NM_014041	ENSG00000114902	SPCS1	HSPC033|SPC1|SPC12|YJR010C-A	signal peptidase complex subunit 1	protein-coding
7434	chr1	32974671	32974830	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-9941	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
105556	chr17	83208001	83208200	+	0	NA	Intergenic	Intergenic	-18797	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
16383	chr1	154400471	154400630	+	0	NA	Intergenic	L1MB3|LINE|L1	-4793	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
18109	chr1	160705101	160705600	+	0	NA	intron (NM_001256030, intron 1 of 2)	Arthur1|DNA|hAT-Tip100	6472	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
5294	chr1	25148651	25148980	+	0	NA	Intergenic	Intergenic	83687	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
150477	chr21	42630051	42630350	+	0	NA	Intergenic	Intergenic	-15105	NR_131192	101928233		NR_131192	ENSG00000225431	LINC01671	-	long intergenic non-protein coding RNA 1671	ncRNA
41210	chr11	65659451	65659550	+	0	NA	intron (NM_001243984, intron 6 of 10)	intron (NM_001243984, intron 6 of 10)	3416	NM_021975	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
193370	chr6	30331351	30331650	+	0	NA	intron (NM_001369523, intron 5 of 8).5	intron (NM_001369523, intron 5 of 8).5	2189	NM_001199119	202658		NM_001199119	ENSG00000248167	TRIM39-RPP21	TRIM39R	TRIM39-RPP21 readthrough	protein-coding
67647	chr14	73070051	73070350	+	0	NA	intron (NM_021239, intron 1 of 18)	AluSx|SINE|Alu	11666	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
224437	chr9	15306801	15308980	+	0	NA	promoter-TSS (NM_001168340)	promoter-TSS (NM_001168340)	-530	NM_152574	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
193845	chr6	31533371	31533530	+	0	NA	intron (NM_080598, intron 6 of 10).7	intron (NM_080598, intron 6 of 10).7	2999	NR_003140	692233		NR_003140	ENSG00000201785	SNORD117	U83	small nucleolar RNA, C/D box 117	snoRNA
195106	chr6	35613251	35613750	+	0	NA	intron (NM_001145775, intron 6 of 11)	AluSx1|SINE|Alu	51289	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
233793	chrX	1445151	1445400	+	0	NA	intron (NM_001173473, intron 1 of 12).2	LTR19-int|LTR|ERV1	7634	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
169364	chr3	160418871	160419030	+	0	NA	intron (NM_005496, intron 10 of 22)	intron (NM_005496, intron 10 of 22)	14205	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
14981	chr1	148040501	148041730	+	0	NA	Intergenic	L1ME2|LINE|L1	-2199	NR_004426	26864		NR_004426	ENSG00000206585	RNVU1-7	RNU1-26P|RNU1-6|RNU1-6P|RNU1-9|RNU1-9P|RNVU1-9|vU1.7|vU1.9	RNA, variant U1 small nuclear 7	snRNA
149918	chr21	36158501	36158900	+	0	NA	intron (NM_001320714, intron 1 of 36)	AluSc|SINE|Alu	1918	NM_001320714	9980		NM_005128	ENSG00000142197	DOP1B	21orf5|C21orf5|DOPEY2	DOP1 leucine zipper like protein B	protein-coding
72640	chr15	38488551	38489050	+	0	NA	3' UTR (NM_001306086, exon 15 of 15)	3' UTR (NM_001306086, exon 15 of 15)	34673	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
173677	chr4	15003601	15005430	+	0	NA	TTS (NR_125911)	TTS (NR_125911)	2034	NM_182646	132864		NM_182485	ENSG00000137449	CPEB2	CPE-BP2|CPEB-2|hCPEB-2	cytoplasmic polyadenylation element binding protein 2	protein-coding
35764	chr11	2153551	2155080	+	0	NA	intron (NM_001042376, intron 2 of 4)	intron (NM_001042376, intron 2 of 4)	-4712	NM_001007139	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
176619	chr4	99507601	99508400	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	-3021	NM_032149	84103		NM_032149	ENSG00000138813	C4orf17	-	chromosome 4 open reading frame 17	protein-coding
208726	chr7	73428401	73428800	+	0	NA	Intergenic	Intergenic	-5178	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
106032	chr18	8623471	8623900	+	0	NA	intron (NM_001025300, intron 1 of 5)	intron (NM_001025300, intron 1 of 5)	14240	NM_001025300	201475		NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding
145525	chr20	44080571	44081350	+	0	NA	Intergenic	Intergenic	106228	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
225490	chr9	35645121	35645380	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-1020	NR_135130	101926948		NR_135130		LOC101926948	-	uncharacterized LOC101926948	ncRNA
171697	chr3	197790651	197792750	+	0	NA	intron (NM_001365715, intron 1 of 20)	CpG	446	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
189675	chr5	176394951	176395800	+	0	NA	intron (NM_001364126, intron 4 of 4)	intron (NM_001364126, intron 4 of 4)	-6448	NM_001256539	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
190088	chr5	177807571	177808330	+	0	NA	intron (NR_157842, intron 1 of 3)	REP522|Satellite|telo	1557	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
58975	chr13	19862901	19864200	+	0	NA	promoter-TSS (NM_001039650)	promoter-TSS (NM_001039650)	86	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
197894	chr6	89346651	89346950	+	0	NA	intron (NM_016021, intron 1 of 7)	L2c|LINE|L2	5922	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
188443	chr5	154471301	154472250	+	0	NA	Intergenic	MIRb|SINE|MIR	6452	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
26320	chr10	15099101	15099650	+	0	NA	intron (NM_001265601, intron 1 of 1)	AluJr|SINE|Alu	2020	NM_001097590	10557		NM_006414	ENSG00000152464	RPP38	-	ribonuclease P/MRP subunit p38	protein-coding
81652	chr16	10950471	10950630	+	0	NA	intron (NM_001243403, intron 1 of 20)	intron (NM_001243403, intron 1 of 20)	5986	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
22285	chr1	212779021	212779480	+	0	NA	intron (NM_001042549, intron 4 of 6)	SVA_D|Retroposon|SVA	12527	NM_001297739	25936		NM_015471	ENSG00000117697	NSL1	C1orf48|DC8|MIS14	NSL1 component of MIS12 kinetochore complex	protein-coding
222958	chr8	143175751	143175850	+	0	NA	Intergenic	LTR71B|LTR|ERV1	-15146	NM_001130478	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
2316	chr1	9115571	9115930	+	0	NA	intron (NM_024980, intron 1 of 3)	MER63D|DNA|hAT-Blackjack	13352	NM_024980	80045		NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
191390	chr6	7727951	7728750	+	0	NA	intron (NM_001718, intron 1 of 6)	intron (NM_001718, intron 1 of 6)	2251	NM_001718	654		NM_001718	ENSG00000153162	BMP6	IO|VGR|VGR1	bone morphogenetic protein 6	protein-coding
108774	chr18	77144271	77144830	+	0	NA	Intergenic	Intergenic	-11767	NM_001025101	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
140445	chr2	233152901	233153100	+	0	NA	intron (NM_001017915, intron 9 of 26).2	L2a|LINE|L2	92658	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
231773	chr9	132246871	132247230	+	0	NA	Intergenic	Intergenic	84992	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
129039	chr2	65033121	65033530	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-23091	NM_001319101	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
18307	chr1	161167871	161168030	+	0	NA	intron (NM_001350128, intron 4 of 11)	intron (NM_001350128, intron 4 of 11)	1304	NM_001365398	5498		NM_000309	ENSG00000143224	PPOX	PPO|V290M|VP|VPCO	protoporphyrinogen oxidase	protein-coding
211721	chr7	106899751	106900050	+	0	NA	intron (NM_001282426, intron 10 of 10)	L1PA14|LINE|L1	34421	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
119359	chr19	40088501	40089000	+	0	NA	intron (NM_001142578, intron 2 of 5).2	L1MA8|LINE|L1	2153	NM_001010880	284323		NM_001010880	ENSG00000197782	ZNF780A	ZNF780	zinc finger protein 780A	protein-coding
79669	chr16	1237771	1238230	+	0	NA	Intergenic	Intergenic	-2705	NM_003294	7177		NM_003294	ENSG00000172236	TPSAB1	TPS1|TPS2|TPSB1|TPSB2|Tryptase-2	tryptase alpha/beta 1	protein-coding
76028	chr15	72178671	72178900	+	0	NA	intron (NM_001012642, intron 1 of 11)	AluY|SINE|Alu	19002	NM_001012642	196996		NM_001012642	ENSG00000175318	GRAMD2A	GRAMD2	GRAM domain containing 2A	protein-coding
225761	chr9	37302311	37302850	+	0	NA	intron (NM_001289119, intron 3 of 8)	intron (NM_001289119, intron 3 of 8)	-120116	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
222608	chr8	141035301	141035550	+	0	NA	Intergenic	Intergenic	-33346	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
97571	chr17	44091721	44091980	+	0	NA	intron (NM_001382393, intron 9 of 26)	intron (NM_001382393, intron 9 of 26)	20939	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
50311	chr12	46513201	46513400	+	0	NA	intron (NR_125380, intron 3 of 3)	L1PA14|LINE|L1	129193	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
114579	chr19	12924751	12925200	+	0	NA	exon (NM_004461, exon 9 of 13)	exon (NM_004461, exon 9 of 13)	4655	NR_049880	100847016		NR_049880	ENSG00000266721	MIR5695	-	microRNA 5695	ncRNA
31815	chr10	99236071	99236430	+	0	NA	promoter-TSS (NM_021828)	promoter-TSS (NM_021828)	-375	NM_001166246	60495		NM_021828	ENSG00000172987	HPSE2	HPA2|HPR2|UFS|UFS1	heparanase 2 (inactive)	protein-coding
123740	chr19	55065201	55065400	+	0	NA	intron (NM_138412, intron 1 of 7).5	AluJb|SINE|Alu	-2152	NR_027381	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
215963	chr8	8646021	8646880	+	0	NA	Intergenic	Intergenic	-55487	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
168397	chr3	142148701	142149800	+	0	NA	5' UTR (NM_001178138, exon 1 of 14)	5' UTR (NM_001178138, exon 1 of 14)	294	NM_001375773	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
98193	chr17	46118301	46119450	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	73907	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
7908	chr1	37472801	37473800	+	0	NA	intron (NR_038842, intron 1 of 2)	L1ME3D|LINE|L1	1143	NR_038842	728431		NR_038842	ENSG00000233621	LITATS1	LINC01137|ZC3H12A-DT	lncRNA induced by TGF-beta and antagonizes TGF-beta signaling 1	ncRNA
221923	chr8	129820021	129820430	+	0	NA	Intergenic	Intergenic	-33601	NM_031415	56169		NM_031415	ENSG00000147697	GSDMC	MLZE	gasdermin C	protein-coding
136937	chr2	190122071	190122330	+	0	NA	Intergenic	Intergenic	-15577	NM_001042521	84281		NM_032321	ENSG00000187699	C2orf88	smAKAP	chromosome 2 open reading frame 88	protein-coding
153109	chr22	23591071	23591430	+	0	NA	Intergenic	Intergenic	-10960	NM_001369906	3543		NM_020070	ENSG00000128322	IGLL1	14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2	immunoglobulin lambda like polypeptide 1	protein-coding
86540	chr16	67179421	67180180	+	0	NA	intron (NM_001369684, intron 3 of 6)	intron (NM_001369684, intron 3 of 6)	4163	NM_001369680	653319		NM_001040715	ENSG00000196123	MATCAP1	KIAA0895L|TMCP1	microtubule associated tyrosine carboxypeptidase 1	protein-coding
206939	chr7	38238371	38238700	+	0	NA	Intergenic	MER4C|LTR|ERV1	35112	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
237645	chrX	124230671	124230830	+	0	NA	Intergenic	Intergenic	-101910	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
178799	chr4	153495401	153496050	+	0	NA	intron (NM_015196, intron 3 of 34)	MER4A|LTR|ERV1	29365	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
182986	chr5	72107401	72107800	+	0	NA	exon (NM_005909, exon 1 of 7)	exon (NM_005909, exon 1 of 7)	125	NM_005909	4131		NM_005909	ENSG00000131711	MAP1B	DFNA83|FUTSCH|MAP5|PPP1R102|PVNH9	microtubule associated protein 1B	protein-coding
56013	chr12	110349071	110349230	+	0	NA	3' UTR (NM_170665, exon 20 of 20)	3' UTR (NM_170665, exon 20 of 20)	52799	NM_001385210	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
6518	chr1	28550071	28550750	+	0	NA	Intergenic	LTR35|LTR|ERV1	-2607	NR_003109	54952		NM_017846	ENSG00000180098	TRNAU1AP	PRO1902|SECP43|TRSPAP1	tRNA selenocysteine 1 associated protein 1	protein-coding
187778	chr5	146079751	146080000	+	0	NA	Intergenic	Intergenic	25702	NM_001029869	153770		NM_001029869	ENSG00000173261	PLAC8L1	-	PLAC8 like 1	protein-coding
44683	chr11	111230271	111230800	+	0	NA	Intergenic	Intergenic	-15190	NM_198498	341032		NM_198498	ENSG00000150750	POU2AF2	C11orf53|OCA-T1|OCAT1	POU class 2 homeobox associating factor 2	protein-coding
109445	chr19	737651	738280	+	0	NA	intron (NM_001040134, intron 7 of 7)	L2a|LINE|L2	-13147	NM_173481	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
96779	chr17	41787851	41787950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1132	NM_001352776	3728		NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PG|PKGB	junction plakoglobin	protein-coding
1087	chr1	1943751	1944350	+	0	NA	intron (NM_001304360, intron 21 of 38)	MLT1D|LTR|ERVL-MaLR	-24771	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
203388	chr6	170557601	170557800	+	0	NA	intron (NM_003194, intron 2 of 7)	AluSx1|SINE|Alu	3331	NM_003194	6908		NM_003194	ENSG00000112592	TBP	GTF2D|GTF2D1|HDL4|SCA17|TBP1|TFIID	TATA-box binding protein	protein-coding
202221	chr6	156805601	156805800	+	0	NA	intron (NM_001371656, intron 2 of 20)	(TTTA)n|Simple_repeat|Simple_repeat	-25969	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
72011	chr15	26628901	26629300	+	0	NA	promoter-TSS (NM_001191321)	promoter-TSS (NM_001191321)	-10	NR_103801	2562		NM_000814	ENSG00000166206	GABRB3	DEE43|ECA5|EIEE43	gamma-aminobutyric acid type A receptor subunit beta3	protein-coding
228222	chr9	97900721	97901380	+	0	NA	intron (NM_001371658, intron 4 of 4)	intron (NM_001371658, intron 4 of 4)	21131	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
46055	chr11	122724521	122724780	+	0	NA	intron (NM_032873, intron 1 of 13)	L2c|LINE|L2	68928	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
82236	chr16	15046621	15046880	+	0	NA	intron (NM_173474, intron 4 of 9).2	AluJb|SINE|Alu	9324	NM_173474	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
231674	chr9	131690171	131690530	+	0	NA	intron (NM_001377935, intron 1 of 26)	MER65-int|LTR|ERV1	19492	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
229932	chr9	126639871	126640550	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	26282	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
108673	chr18	76858951	76859050	+	0	NA	intron (NM_001306089, intron 3 of 30)	intron (NM_001306089, intron 3 of 30)	35240	NM_007345	7776		NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
151150	chr21	44916621	44917230	+	0	NA	intron (NM_001127491, intron 1 of 15)	intron (NM_001127491, intron 1 of 15)	3974	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
157578	chr22	45977801	45978050	+	0	NA	promoter-TSS (NM_058238)	promoter-TSS (NM_058238)	-763	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
2123	chr1	8218701	8218900	+	0	NA	Intergenic	Intergenic	10128	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
475	chr1	1155721	1156180	+	0	NA	Intergenic	Intergenic	-11154	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
107991	chr18	58672971	58673130	+	0	NA	intron (NM_173844, intron 1 of 15)	intron (NM_173844, intron 1 of 15)	-1177	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
83291	chr16	24102071	24102230	+	0	NA	intron (NM_212535, intron 7 of 16)	MIR1_Amn|SINE|MIR	-100966	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
34555	chr10	133124701	133124950	+	0	NA	intron (NM_001291085, intron 2 of 3)	CpG	22579	NM_001291085	84435		NM_032422	ENSG00000197177	ADGRA1	GPR123	adhesion G protein-coupled receptor A1	protein-coding
228197	chr9	97705351	97705900	+	0	NA	intron (NR_147055, intron 10 of 10)	intron (NR_147055, intron 10 of 10)	-8216	NR_149094	7507		NM_000380	ENSG00000136936	XPA	XP1|XPAC	XPA, DNA damage recognition and repair factor	protein-coding
199119	chr6	111691121	111691800	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	67671	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
55437	chr12	104551651	104551950	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-39833	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
161094	chr3	38149751	38150250	+	0	NA	Intergenic	Intergenic	10249	NR_164663	4615		NM_002468	ENSG00000172936	MYD88	IMD68|MYD88D|WM1	MYD88 innate immune signal transduction adaptor	protein-coding
30247	chr10	75103301	75103700	+	0	NA	intron (NM_001320843, intron 1 of 4)	intron (NM_001320843, intron 1 of 4)	-4010	NM_016364	51207		NM_016364	ENSG00000079393	DUSP13B	DUSP13|MDSP|SKRP4|TMDP	dual specificity phosphatase 13B	protein-coding
165265	chr3	75430771	75431130	+	0	NA	intron (NR_024241, intron 2 of 7)	intron (NR_024241, intron 2 of 7)	4165	NR_024241	692099		NR_024241	ENSG00000291223	FAM86DP	FAM86D	family with sequence similarity 86 member D, pseudogene	pseudo
9265	chr1	46299301	46299500	+	0	NA	intron (NM_006369, intron 1 of 9)	AluJb|SINE|Alu	4216	NM_006369	10489		NM_006369	ENSG00000132128	LRRC41	MUF1|PP7759	leucine rich repeat containing 41	protein-coding
89110	chr16	88494171	88494750	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	25542	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
42300	chr11	68455221	68456050	+	0	NA	Intergenic	Intergenic	-5117	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
132041	chr2	101007021	101007880	+	0	NA	TTS (NM_000993)	TTS (NM_000993)	5161	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
149692	chr21	33947201	33948200	+	0	NA	intron (NR_038883, intron 2 of 2)	intron (NR_038883, intron 2 of 2)	16486	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
18936	chr1	168484071	168484580	+	0	NA	intron (NR_125956, intron 4 of 4)	intron (NR_125956, intron 4 of 4)	11319	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
141151	chr2	239247551	239247850	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-52243	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
110820	chr19	2483451	2483550	+	0	NA	Intergenic	AluJb|SINE|Alu	7373	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
121322	chr19	46768271	46769230	+	0	NA	Intergenic	LTR5B|LTR|ERVK	16064	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
115362	chr19	15228171	15228550	+	0	NA	intron (NM_024794, intron 4 of 6)	intron (NM_024794, intron 4 of 6)	4088	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
80155	chr16	2099371	2099530	+	0	NA	intron (NM_001009944, intron 30 of 45)	L1M4|LINE|L1	7298	NR_106965	102465985		NR_106965	ENSG00000283346	MIR6511B2	MIR6511B-2|hsa-mir-6511b-2	microRNA 6511b-2	ncRNA
173858	chr4	22689371	22689530	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-3464	NM_020973	57733		NM_020973	ENSG00000249948	GBA3	CBG|CBGL1|GLUC|KLRP	glucosylceramidase beta 3 (gene/pseudogene)	protein-coding
79003	chr16	10021	11130	+	0	NA	promoter-TSS (NR_045117)	promoter-TSS (NR_045117)	-980	NR_045117	100287029		NR_045117	ENSG00000290355	DDX11L10	DDX11L1|DDX11P	DEAD/H-box helicase 11 like 10 (pseudogene)	pseudo
118125	chr19	34777471	34777830	+	0	NA	Intergenic	L1MA10|LINE|L1	-4435	NM_001007248	148103		NM_001007247	ENSG00000153896	ZNF599	-	zinc finger protein 599	protein-coding
45913	chr11	120684901	120685150	+	0	NA	intron (NM_001282473, intron 3 of 17)	intron (NM_001282473, intron 3 of 17)	120589	NM_001282470	2900		NM_014619	ENSG00000149403	GRIK4	EAA1|GRIK|GluK4|GluK4-2|KA1	glutamate ionotropic receptor kainate type subunit 4	protein-coding
145847	chr20	45883801	45884280	+	0	NA	exon (NM_080603, exon 2 of 2)	exon (NM_080603, exon 2 of 2)	2813	NM_080603	90204		NM_080603	ENSG00000168612	ZSWIM1	C20orf162	zinc finger SWIM-type containing 1	protein-coding
69207	chr14	92686671	92687400	+	0	NA	intron (NM_024832, intron 9 of 9)	CpG	61592	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
39138	chr11	49789851	49790000	+	0	NA	intron (NR_027044, intron 3 of 6)	Tigger1|DNA|TcMar-Tigger	-162466	NM_001001955	283092		NM_001001955	ENSG00000258817	OR4C13	-	olfactory receptor family 4 subfamily C member 13	protein-coding
38264	chr11	36744551	36744880	+	0	NA	Intergenic	Intergenic	-146436	NM_001243786	5897		NM_000536	ENSG00000175097	RAG2	RAG-2	recombination activating 2	protein-coding
17395	chr1	156621221	156621750	+	0	NA	intron (NM_021817, intron 2 of 6)	AluSq2|SINE|Alu	443	NR_135113	101928177		NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
15040	chr1	148372601	148373160	+	0	NA	Intergenic	LTR51|LTR|ERV1	-10347	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
97620	chr17	44141321	44142580	+	0	NA	promoter-TSS (NM_001321310)	promoter-TSS (NM_001321310)	20	NM_001321310	78995		NM_024032	ENSG00000125319	HROB	C17orf53|MCM8IP	homologous recombination factor with OB-fold	protein-coding
212374	chr7	127854071	127854230	+	0	NA	intron (NM_014390, intron 12 of 23)	AluSz6|SINE|Alu	-143359	NR_027330	27099		NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
5136	chr1	24895301	24895500	+	0	NA	Intergenic	L1ME4a|LINE|L1	24016	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
179005	chr4	163624651	163625150	+	0	NA	intron (NM_001166373, intron 4 of 7)	L2|LINE|L2	-11366	NM_017923	55016		NM_017923	ENSG00000145416	MARCHF1	MARCH-I|MARCH1|RNF171	membrane associated ring-CH-type finger 1	protein-coding
83562	chr16	28098421	28098830	+	0	NA	exon (NM_015171, exon 24 of 24)	exon (NM_015171, exon 24 of 24)	-34911	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
183834	chr5	86617701	86619230	+	0	NA	intron (NM_001867, intron 1 of 2)	intron (NM_001867, intron 1 of 2)	524	NM_001867	1350		NM_001867	ENSG00000127184	COX7C	-	cytochrome c oxidase subunit 7C	protein-coding
65103	chr14	41718801	41719030	+	0	NA	intron (NM_001346173, intron 1 of 4)	intron (NM_001346173, intron 1 of 4)	112059	NM_001330106	145581		NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
39831	chr11	62112171	62112880	+	0	NA	Intergenic	Intergenic	-11486	NM_020238	3619		NM_020238	ENSG00000149503	INCENP	-	inner centromere protein	protein-coding
55955	chr12	110012201	110012980	+	0	NA	intron (NM_033121, intron 2 of 14)	intron (NM_033121, intron 2 of 14)	13160	NM_033121	88455		NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
128947	chr2	64608851	64609950	+	0	NA	intron (NR_034023, intron 1 of 3)	CpG	2088	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
236278	chrX	66038001	66038400	+	0	NA	intron (NM_001184830, intron 1 of 6)	intron (NM_001184830, intron 1 of 6)	1880	NM_007268	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
119053	chr19	39083801	39085350	+	0	NA	intron (NM_001004318, intron 1 of 12)	intron (NM_001004318, intron 1 of 12)	207	NM_001004318	390928		NM_001004318	ENSG00000183760	ACP7	PAPL|PAPL1	acid phosphatase 7, tartrate resistant (putative)	protein-coding
64780	chr14	34722821	34723500	+	0	NA	Intergenic	MER119|DNA|hAT-Charlie	-8337	NR_028130	1073		NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding
4460	chr1	21342071	21342680	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	3129	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
103218	chr17	77484601	77485730	+	0	NA	intron (NM_001293697, intron 2 of 9)	intron (NM_001293697, intron 2 of 9)	9530	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
13646	chr1	116513051	116513150	+	0	NA	Intergenic	L2|LINE|L2	-34274	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
17360	chr1	156506821	156507650	+	0	NA	Intergenic	AluSc|SINE|Alu	-6460	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
27537	chr10	32322671	32323100	+	0	NA	intron (NR_168508, intron 1 of 12)	L1MA4|LINE|L1	24273	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
206751	chr7	36683071	36683430	+	0	NA	intron (NM_001177507, intron 1 of 19)	L1MC5|LINE|L1	41244	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
142449	chr20	3990671	3991250	+	0	NA	intron (NM_001134338, intron 1 of 6)	L1ME4b|LINE|L1	24598	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
68126	chr14	75517201	75517800	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-4969	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
43594	chr11	83158901	83159350	+	0	NA	intron (NM_015885, intron 1 of 15)	intron (NM_015885, intron 1 of 15)	1994	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
94350	chr17	28899521	28899950	+	0	NA	intron (NM_144683, intron 4 of 4)	AluSz|SINE|Alu	-2002	NM_001330170	2319		NM_004475	ENSG00000132589	FLOT2	ECS-1|ECS1|ESA|ESA1|M17S1	flotillin 2	protein-coding
47796	chr12	6574951	6575050	+	0	NA	intron (NM_001273, intron 37 of 39)	MER58B|DNA|hAT-Charlie	6609	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
160238	chr3	23963551	23964050	+	0	NA	intron (NR_110524, intron 6 of 8)	intron (NR_110524, intron 6 of 8)	-17238	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
129333	chr2	68743471	68743900	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	8308	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
59866	chr13	30623021	30623280	+	0	NA	intron (NM_001321533, intron 2 of 6)	L2a|LINE|L2	5230	NM_005800	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
207141	chr7	43229971	43230130	+	0	NA	intron (NM_015052, intron 2 of 29)	L1MC4|LINE|L1	79155	NR_037508	100500829		NR_037508	ENSG00000264069	MIR3943	-	microRNA 3943	ncRNA
100692	chr17	63828851	63828950	+	0	NA	intron (NM_001199163, intron 2 of 11)	Tigger2|DNA|TcMar-Tigger	1216	NM_001199163	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
232480	chr9	136244071	136244770	+	0	NA	intron (NM_181701, intron 1 of 11)	intron (NM_181701, intron 1 of 11)	1392	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
120324	chr19	43527001	43528100	+	0	NA	promoter-TSS (NM_014297)	promoter-TSS (NM_014297)	-349	NM_001320869	23474		NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1 persulfide dioxygenase	protein-coding
168379	chr3	141918251	141918350	+	0	NA	intron (NM_001679, intron 5 of 6)	intron (NM_001679, intron 5 of 6)	41657	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
50619	chr12	48686621	48687250	+	0	NA	Intergenic	L2a|LINE|L2	-4697	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
52904	chr12	57222251	57222350	+	0	NA	intron (NM_007224, intron 1 of 1)	intron (NM_007224, intron 1 of 1)	5506	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
154517	chr22	36026551	36026930	+	0	NA	intron (NM_001349999, intron 1 of 13)	intron (NM_001349999, intron 1 of 13)	2084	NM_001082578	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
114597	chr19	12949771	12950750	+	0	NA	intron (NM_001270363, intron 7 of 7)	intron (NM_001270363, intron 7 of 7)	4398	NM_005053	5886		NM_005053	ENSG00000179262	RAD23A	HHR23A|HR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding
237308	chrX	115898751	115898850	+	0	NA	intron (NR_147172, intron 2 of 2)	intron (NR_147172, intron 2 of 2)	57836	NR_147172	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
203626	chr7	958601	959480	+	0	NA	Intergenic	Intergenic	-3633	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
116109	chr19	17301871	17302030	+	0	NA	promoter-TSS (NM_001382342)	promoter-TSS (NM_001382342)	-915	NM_001382342	64981		NM_023937	ENSG00000130312	MRPL34	L34mt|bL34m	mitochondrial ribosomal protein L34	protein-coding
73880	chr15	50358821	50359150	+	0	NA	TTS (NR_024490)	TTS (NR_024490)	-1344	NR_039862	100616396		NR_039862	ENSG00000284284	MIR4712	-	microRNA 4712	ncRNA
103120	chr17	77377871	77378700	+	0	NA	intron (NM_001113494, intron 1 of 10)	MIRb|SINE|MIR	2202	NM_001113494	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
178777	chr4	153449871	153450030	+	0	NA	Intergenic	AluY|SINE|Alu	-16396	NM_015196	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
105880	chr18	3252771	3253280	+	0	NA	intron (NM_001303049, intron 1 of 3)	intron (NM_001303049, intron 1 of 3)	812	NM_001303049	10627		NM_006471	ENSG00000101608	MYL12A	HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B	myosin light chain 12A	protein-coding
198456	chr6	106141421	106142650	+	0	NA	Intergenic	Intergenic	43094	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
68313	chr14	77372401	77372830	+	0	NA	intron (NM_001346131, intron 1 of 5)	intron (NM_001346131, intron 1 of 5)	1294	NM_001346134	283578		NM_213601	ENSG00000100580	TMED8	FAM15B	transmembrane p24 trafficking protein family member 8	protein-coding
112293	chr19	5839421	5839680	+	0	NA	promoter-TSS (NM_001381959)	promoter-TSS (NM_001381959)	-758	NM_001381956	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
152213	chr22	20131601	20132980	+	0	NA	intron (NM_001185024, intron 1 of 10)	intron (NM_001185024, intron 1 of 10)	486	NM_013373	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
147104	chr20	53884701	53885450	+	0	NA	Intergenic	MIRb|SINE|MIR	-9366	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
172021	chr4	988721	989480	+	0	NA	exon (NM_213613, exon 4 of 4)	exon (NM_213613, exon 4 of 4)	2056	NM_000203	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
167225	chr3	128466951	128467850	+	0	NA	promoter-TSS (NM_153330)	promoter-TSS (NM_153330)	-152	NM_153330	165721		NM_153330	ENSG00000179407	DNAJB8	CT156|DJ6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding
152982	chr22	23140171	23140800	+	0	NA	intron (NM_014433, intron 1 of 6)	intron (NM_014433, intron 1 of 6)	1505	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
238693	chrX	154067371	154067730	+	0	NA	intron (NM_001316337, intron 2 of 4)	AluSx|SINE|Alu	29419	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
101694	chr17	68456821	68458310	+	0	NA	promoter-TSS (NM_001320772)	promoter-TSS (NM_001320772)	-41	NR_135470	55062		NM_017983	ENSG00000070540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
25024	chr10	3666421	3667350	+	0	NA	intron (NR_131187, intron 1 of 1)	(TTCTTT)n|Simple_repeat|Simple_repeat	118324	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
97737	chr17	44382601	44383130	+	0	NA	intron (NM_000419, intron 12 of 29)	L2|LINE|L2	6784	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
47261	chr12	1504421	1504880	+	0	NA	TTS (NR_028415)	TTS (NR_028415)	4159	NR_028415	100292680		NR_028415	ENSG00000249628	LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
146943	chr20	52083651	52083950	+	0	NA	TTS (NM_001319146)	TTS (NM_001319146)	21684	NM_001319146	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
183050	chr5	73436171	73437880	+	0	NA	Intergenic	CpG	11752	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
83766	chr16	28717421	28717880	+	0	NA	intron (NM_001286478, intron 8 of 20)	L1M4|LINE|L1	6186	NM_003752	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
87564	chr16	72013001	72013800	+	0	NA	intron (NM_001361, intron 2 of 8)	intron (NM_001361, intron 2 of 8)	4656	NM_001361	1723		NM_001361	ENSG00000102967	DHODH	DHOdehase|POADS|URA1	dihydroorotate dehydrogenase (quinone)	protein-coding
171679	chr3	197737971	197738130	+	0	NA	intron (NM_001145642, intron 1 of 20)	AluJo|SINE|Alu	-1124	NM_001346873	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
181303	chr5	40220271	40220430	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	168059	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
67848	chr14	74017271	74017430	+	0	NA	intron (NM_001321986, intron 1 of 16)	intron (NM_001321986, intron 1 of 16)	1938	NM_001382257	957		NM_001249	ENSG00000187097	ENTPD5	CD39L4|NTPDase-5|PCPH	ectonucleoside triphosphate diphosphohydrolase 5 (inactive)	protein-coding
85352	chr16	50210151	50210900	+	0	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	-56026	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
144490	chr20	35656271	35656630	+	0	NA	intron (NM_001198840, intron 1 of 1)	intron (NM_001198840, intron 1 of 1)	-2541	NM_003915	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
117322	chr19	19512601	19513580	+	0	NA	Intergenic	AluSq|SINE|Alu	2458	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
224525	chr9	19171821	19172280	+	0	NA	Intergenic	Intergenic	-44444	NR_038064	123		NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
154760	chr22	36512451	36512550	+	0	NA	exon (NM_003753, exon 13 of 15)	exon (NM_003753, exon 13 of 15)	-5460	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
160092	chr3	18829201	18829400	+	0	NA	Intergenic	LTR37A|LTR|ERV1	-319210	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
46238	chr11	124672351	124672450	+	0	NA	intron (NM_001199922, intron 3 of 11)	L1ME3F|LINE|L1	1339	NM_170601	54414		NM_018978	ENSG00000110013	SIAE	AIS6|CSE-C|CSEC|LSE|YSG2	sialic acid acetylesterase	protein-coding
106266	chr18	12394221	12394850	+	0	NA	Intergenic	Intergenic	-13394	NM_006553	10650		NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
12201	chr1	100387651	100388480	+	0	NA	intron (NM_001319210, intron 3 of 16)	intron (NM_001319210, intron 3 of 16)	35559	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
101793	chr17	73224621	73225030	+	0	NA	intron (NM_001098832, intron 2 of 3)	intron (NM_001098832, intron 2 of 3)	2892	NM_001289412	84923		NM_032837	ENSG00000133193	VCF1	FAM104A	VCP nuclear cofactor family member 1	protein-coding
67141	chr14	68686901	68687300	+	0	NA	Intergenic	L1MB3|LINE|L1	-58313	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
222345	chr8	133546751	133547550	+	0	NA	intron (NM_173344, intron 1 of 9)	MLT1H2|LTR|ERVL-MaLR	24737	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
238794	chrX	154383921	154384400	+	0	NA	Intergenic	Intergenic	4865	NM_000117	2010		NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
144761	chr20	36614121	36614600	+	0	NA	exon (NM_032214, exon 7 of 8)	exon (NM_032214, exon 7 of 8)	8581	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
47592	chr12	4829371	4830230	+	0	NA	intron (NM_002235, intron 1 of 1)	MIRc|SINE|MIR	20624	NM_002235	3742		NM_002235	ENSG00000151079	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel subfamily A member 6	protein-coding
114411	chr19	12650101	12650300	+	0	NA	exon (NM_000528, exon 17 of 24)	exon (NM_000528, exon 17 of 24)	16542	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
154491	chr22	35654751	35655050	+	0	NA	intron (NM_030641, intron 1 of 2)	MER34B|LTR|ERV1	6454	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
185318	chr5	126784521	126785100	+	0	NA	intron (NR_134488, intron 1 of 11)	AluY|SINE|Alu	7674	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
222870	chr8	142740871	142741730	+	0	NA	intron (NM_020427, intron 2 of 2)	intron (NM_020427, intron 2 of 2)	1106	NM_020427	57152		NM_020427	ENSG00000126233	SLURP1	ANUP|ARS|ArsB|LY6-MT|LY6LS|MDM	secreted LY6/PLAUR domain containing 1	protein-coding
65735	chr14	53146271	53146630	+	0	NA	intron (NM_030637, intron 1 of 11)	AluSz|SINE|Alu	6873	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
187495	chr5	142315951	142316250	+	0	NA	intron (NM_001127496, intron 1 of 1)	intron (NM_001127496, intron 1 of 1)	2222	NR_131221	100642175		NR_131221		SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
33173	chr10	112985921	112986180	+	0	NA	intron (NM_001363501, intron 4 of 13)	intron (NM_001363501, intron 4 of 13)	35800	NM_001363501	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
79361	chr16	629471	629830	+	0	NA	TTS (NM_021168)	TTS (NM_021168)	-1335	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
216438	chr8	19464121	19464380	+	0	NA	intron (NR_148900, intron 3 of 9)	intron (NR_148900, intron 3 of 9)	138295	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
36917	chr11	10801521	10801930	+	0	NA	promoter-TSS (NR_004403)	promoter-TSS (NR_004403)	-117	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
46989	chr12	42121	42380	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-4117	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
160149	chr3	20101171	20101530	+	0	NA	exon (NM_003884, exon 5 of 18)	exon (NM_003884, exon 5 of 18)	-36215	NR_036086	100422901		NR_036086	ENSG00000266745	MIR3135A	MIR3135|hsa-mir-3135a	microRNA 3135a	ncRNA
139086	chr2	218876501	218877450	+	0	NA	Intergenic	Intergenic	-3877	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
220043	chr8	92167451	92167550	+	0	NA	Intergenic	5S|rRNA|rRNA	-64115	NM_175634	862		NM_004349	ENSG00000079102	RUNX1T1	AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	RUNX1 partner transcriptional co-repressor 1	protein-coding
74304	chr15	58209071	58209440	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	70874	NM_001320635	366		NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
3649	chr1	16399271	16400030	+	0	NA	intron (NM_001353349, intron 9 of 10)	MIRb|SINE|MIR	32408	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
209205	chr7	75429451	75429750	+	0	NA	intron (NM_001099415, intron 7 of 14)	AluSz|SINE|Alu	19278	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
89047	chr16	88436121	88436380	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-17030	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
84189	chr16	29847151	29847650	+	0	NA	intron (NM_017458, intron 14 of 14)	intron (NM_017458, intron 14 of 14)	15826	NM_006319	10423		NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
75995	chr15	70672171	70672730	+	0	NA	intron (NM_001008224, intron 13 of 18)	intron (NM_001008224, intron 13 of 18)	29832	NM_001008224	55075		NM_018003	ENSG00000137831	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
219813	chr8	81573771	81574130	+	0	NA	Intergenic	L1PB1|LINE|L1	-42560	NM_001105281	646486		NM_001105281	ENSG00000197416	FABP12	-	fatty acid binding protein 12	protein-coding
181009	chr5	35850171	35850330	+	0	NA	Intergenic	Intergenic	-6641	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
189941	chr5	177398271	177398630	+	0	NA	3' UTR (NM_003052, exon 13 of 13)	3' UTR (NM_003052, exon 13 of 13)	2211	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
184689	chr5	108726401	108726950	+	0	NA	Intergenic	Intergenic	1586	NR_046368	100652853		NR_046368		LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
147565	chr20	60263001	60263230	+	0	NA	intron (NR_046099, intron 3 of 4)	intron (NR_046099, intron 3 of 4)	-45359	NR_030376	693231		NR_030376	ENSG00000207802	MIR646	MIRN646|hsa-mir-646	microRNA 646	ncRNA
5566	chr1	25917951	25918680	+	0	NA	Intergenic	Intergenic	-11438	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
193435	chr6	30478821	30479450	+	0	NA	Intergenic	L1PB1|LINE|L1	-10374	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
224847	chr9	27690371	27690930	+	0	NA	Intergenic	L1PA2|LINE|L1	-116784	NM_001256054	203228		NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1	C9orf72-SMCR8 complex subunit	protein-coding
227721	chr9	93043151	93043900	+	0	NA	Intergenic	AluSg|SINE|Alu	-15163	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
220349	chr8	99498551	99499180	+	0	NA	intron (NM_152564, intron 25 of 61)	intron (NM_152564, intron 25 of 61)	37865	NR_030329	693184		NR_030329	ENSG00000207804	MIR599	MIRN599|hsa-mir-599	microRNA 599	ncRNA
166632	chr3	119600771	119601180	+	0	NA	intron (NM_001293225, intron 1 of 10)	intron (NM_001293225, intron 1 of 10)	704	NM_001293225	51365		NM_015900	ENSG00000144837	PLA1A	PS-PLA1|PSPLA1	phospholipase A1 member A	protein-coding
27948	chr10	42081671	42081830	+	0	NA	Intergenic	Intergenic	286295	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
106298	chr18	12843971	12844130	+	0	NA	intron (NM_080422, intron 2 of 9)	L1MD2|LINE|L1	-3088	NM_001308287	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
88901	chr16	87776801	87777000	+	0	NA	intron (NR_120309, intron 2 of 3)	AluSq2|SINE|Alu	2248	NR_120309	102724467		NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA
191529	chr6	11380671	11381000	+	0	NA	intron (NR_073131, intron 1 of 9)	AluJr|SINE|Alu	1513	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
230672	chr9	128714751	128715280	+	0	NA	intron (NM_001317926, intron 13 of 21)	intron (NM_001317926, intron 13 of 21)	9112	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
75960	chr15	70478121	70479280	+	0	NA	Intergenic	Intergenic	27228	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
125256	chr2	10429571	10429980	+	0	NA	Intergenic	(ATGG)n|Simple_repeat|Simple_repeat	17074	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
184560	chr5	102766421	102766830	+	0	NA	intron (NM_001364588, intron 1 of 24)	MER1A|DNA|hAT-Charlie	11320	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
173970	chr4	26075601	26075820	+	0	NA	Intergenic	Intergenic	-87748	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
34448	chr10	132429901	132430350	+	0	NA	Intergenic	Intergenic	-15064	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
36725	chr11	9209151	9209850	+	0	NA	intron (NM_001243254, intron 1 of 22)	intron (NM_001243254, intron 1 of 22)	55826	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
26579	chr10	21992501	21992700	+	0	NA	intron (NM_022365, intron 1 of 11)	MER33|DNA|hAT-Charlie	11130	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
88372	chr16	84596151	84596250	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	21878	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
162145	chr3	46961521	46962050	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	14716	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
237971	chrX	133985121	133985980	+	0	NA	promoter-TSS (NM_001164617)	promoter-TSS (NM_001164617)	44	NM_004484	2719		NM_004484	ENSG00000147257	GPC3	DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1	glypican 3	protein-coding
70816	chr14	103561721	103563240	+	0	NA	promoter-TSS (NM_001015049)	promoter-TSS (NM_001015049)	-160	NM_004873	9529		NM_004873	ENSG00000166170	BAG5	BAG-5|CMD2F	BAG cochaperone 5	protein-coding
69719	chr14	98207121	98207580	+	0	NA	Intergenic	Intergenic	-229226	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
216867	chr8	22624271	22624800	+	0	NA	intron (NR_156436, intron 6 of 9)	L2a|LINE|L2	17674	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
40517	chr11	64282901	64283430	+	0	NA	intron (NM_032989, intron 2 of 3)	intron (NM_032989, intron 2 of 3)	1500	NM_032989	572		NM_004322	ENSG00000002330	BAD	BBC2|BCL2L8	BCL2 associated agonist of cell death	protein-coding
30589	chr10	80147151	80147600	+	0	NA	Intergenic	L1MB5|LINE|L1	14645	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
54243	chr12	82426121	82426380	+	0	NA	intron (NR_144941, intron 6 of 11)	intron (NR_144941, intron 6 of 11)	-67445	NR_033192	29080		NM_014167	ENSG00000133773	CCDC59	BR22|HSPC128|TAP26	coiled-coil domain containing 59	protein-coding
147472	chr20	59117051	59118030	+	0	NA	Intergenic	Intergenic	-5848	NM_001384354	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
92965	chr17	17089101	17089500	+	0	NA	intron (NM_015134, intron 3 of 22)	MLT1D|LTR|ERVL-MaLR	46843	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
168073	chr3	138118721	138119100	+	0	NA	Intergenic	Intergenic	-3302	NM_173543	199221		NM_173543	ENSG00000158163	DZIP1L	DZIP2|PKD5	DAZ interacting zinc finger protein 1 like	protein-coding
119585	chr19	40694921	40695180	+	0	NA	intron (NM_001142555, intron 12 of 13)	AluSx|SINE|Alu	-4399	NM_001289979	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
19213	chr1	172450971	172451350	+	0	NA	intron (NM_139240, intron 3 of 6)	intron (NM_139240, intron 3 of 6)	-1733	NM_001300760	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
217923	chr8	38072371	38072530	+	0	NA	Intergenic	AluSz|SINE|Alu	-33043	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
228179	chr9	97468671	97468830	+	0	NA	intron (NM_001302884, intron 7 of 15)	intron (NM_001302884, intron 7 of 15)	-32430	NM_001166116	7111		NM_003275	ENSG00000136842	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
135833	chr2	170710271	170710430	+	0	NA	intron (NR_110185, intron 5 of 5)	L2|LINE|L2	4217	NR_027433	440925		NM_001013712	ENSG00000222033	LINC01124	-	long intergenic non-protein coding RNA 1124	ncRNA
55089	chr12	97149051	97149230	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	241674	NM_001135175	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
51081	chr12	49956271	49956630	+	0	NA	3' UTR (NM_000486, exon 4 of 4)	3' UTR (NM_000486, exon 4 of 4)	-5422	NM_001651	362		NM_001651	ENSG00000161798	AQP5	AQP-5|PPKB	aquaporin 5	protein-coding
184717	chr5	109405721	109406180	+	0	NA	intron (NM_014819, intron 1 of 9)	L1ME1|LINE|L1	4024	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
27771	chr10	35351971	35352130	+	0	NA	intron (NM_001282852, intron 1 of 8)	intron (NM_001282852, intron 1 of 8)	15176	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
92990	chr17	17169321	17169780	+	0	NA	intron (NM_001364716, intron 16 of 23)	intron (NM_001364716, intron 16 of 23)	36783	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
15117	chr1	148649371	148649530	+	0	NA	intron (NM_001364007, intron 1 of 4)	intron (NM_001364007, intron 1 of 4)	30296	NM_001364007	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
16344	chr1	154275351	154275800	+	0	NA	intron (NM_006118, intron 6 of 6)	intron (NM_006118, intron 6 of 6)	2946	NM_006118	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
202433	chr6	157978521	157978780	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-3213	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
11311	chr1	89310151	89311030	+	0	NA	Intergenic	Intergenic	-20228	NR_077244	729930		NR_077244		LOC729930	-	intraflagellar transport associated protein pseudogene	pseudo
15319	chr1	149879171	149880230	+	0	NA	Intergenic	Intergenic	6982	NM_003528	8349		NM_003528	ENSG00000184678	H2BC21	GL105|H2B|H2B-GL105|H2B.1|H2BE|H2BFQ|H2BGL105|H2BQ|HIST2H2BE	H2B clustered histone 21	protein-coding
160176	chr3	23440401	23441200	+	0	NA	intron (NM_001370225, intron 3 of 5)	intron (NM_001370225, intron 3 of 5)	237473	NM_001370228	7325		NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
175423	chr4	70997121	70997780	+	0	NA	intron (NM_000788, intron 1 of 6)	intron (NM_000788, intron 1 of 6)	3801	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
187982	chr5	149499951	149500250	+	0	NA	intron (NM_001271741, intron 9 of 9)	AluY|SINE|Alu	50265	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
17870	chr1	159944651	159944750	+	0	NA	intron (NM_001135050, intron 1 of 20)	intron (NM_001135050, intron 1 of 20)	913	NM_001135050	57549		NM_020789	ENSG00000085552	IGSF9	FP18798|IGSF9A|Nrt1	immunoglobulin superfamily member 9	protein-coding
174025	chr4	26746721	26746980	+	0	NA	intron (NM_001292054, intron 15 of 17)	MER44B|DNA|TcMar-Tigger	113394	NR_134675	105374546		NR_134673		STIM2-AS1	-	STIM2 antisense RNA 1	ncRNA
73133	chr15	41331371	41331530	+	0	NA	intron (NM_007280, intron 2 of 4)	AluJr|SINE|Alu	1141	NM_007280	11339		NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
56358	chr12	113091851	113092150	+	0	NA	intron (NM_004416, intron 3 of 9)	intron (NM_004416, intron 3 of 9)	35270	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
33008	chr10	110612351	110612750	+	0	NA	Intergenic	Intergenic	-31786	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
215514	chr7	158706651	158707150	+	0	NA	Intergenic	LTR2752|LTR|ERV1	-2096	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
59376	chr13	24727751	24728350	+	0	NA	Intergenic	AluSx3|SINE|Alu	-36119	NM_001184993	56163		NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
187213	chr5	140699071	140699230	+	0	NA	3' UTR (NM_001278732, exon 11 of 11)	3' UTR (NM_001278732, exon 11 of 11)	-1297	NM_144723	153527		NM_144723	ENSG00000146007	ZMAT2	Ptg-12|Snu23	zinc finger matrin-type 2	protein-coding
236136	chrX	57929451	57929630	+	0	NA	Intergenic	LTR55|LTR|ERVL?	-19082	NM_007156	7789		NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger X-linked duplicated A	protein-coding
148130	chr20	63470701	63470900	+	0	NA	intron (NM_001382235, intron 1 of 16)	intron (NM_001382235, intron 1 of 16)	1855	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
216361	chr8	17591171	17591530	+	0	NA	intron (NM_001372073, intron 2 of 5)	intron (NM_001372073, intron 2 of 5)	14134	NM_001372073	5157		NM_006207	ENSG00000104213	PDGFRL	PDGRL|PRLTS	platelet derived growth factor receptor like	protein-coding
128968	chr2	64650921	64651180	+	0	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	2863	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
136630	chr2	179049701	179050250	+	0	NA	5' UTR (NM_001316745, exon 1 of 12)	5' UTR (NM_001316745, exon 1 of 12)	162	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
12886	chr1	110336151	110336850	+	0	NA	intron (NR_036595, intron 1 of 3)	intron (NR_036595, intron 1 of 3)	2671	NR_036595	440600		NR_036595	ENSG00000227963	RBM15-AS1	AS-RBM15	RBM15 antisense RNA 1	ncRNA
158131	chr22	50168421	50168880	+	0	NA	Intergenic	Intergenic	-2081	NR_027691	56666		NM_052839	ENSG00000073150	PANX2	PX2|hPANX2	pannexin 2	protein-coding
170543	chr3	186776051	186776580	+	0	NA	Intergenic	L1MDa|LINE|L1	-7262	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
109835	chr19	1192171	1193250	+	0	NA	Intergenic	AluSz6|SINE|Alu	-13068	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
44644	chr11	110298001	110298680	+	0	NA	Intergenic	MIR|SINE|MIR	-1628	NM_001260493	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
171646	chr3	197629251	197629780	+	0	NA	Intergenic	Intergenic	-1634	NR_003266	220729		NR_003266	ENSG00000291091	SDHAP4	-	SDHA pseudogene 4	pseudo
145868	chr20	45936671	45936830	+	0	NA	intron (NM_022104, intron 1 of 16)	AluSz|SINE|Alu	2067	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
5187	chr1	24949371	24949930	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	15360	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
196421	chr6	43425871	43426200	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-1506	NM_001350518	89845		NM_033450	ENSG00000124574	ABCC10	EST182763|MRP7|SIMRP7	ATP binding cassette subfamily C member 10	protein-coding
14596	chr1	145231501	145232100	+	0	NA	Intergenic	L1PA16|LINE|L1	10399	NM_001164262	728945		NM_001164262	ENSG00000279782	PPIAL4F	-	peptidylprolyl isomerase A like 4F	protein-coding
27251	chr10	29660521	29660830	+	0	NA	intron (NM_003174, intron 2 of 35)	intron (NM_003174, intron 2 of 35)	-25704	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
105752	chr18	2756501	2756700	+	0	NA	intron (NM_015295, intron 34 of 47)	intron (NM_015295, intron 34 of 47)	-90406	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
139534	chr2	224583301	224583500	+	0	NA	intron (NM_003590, intron 1 of 15)	intron (NM_003590, intron 1 of 15)	1963	NM_003590	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
142765	chr20	10558271	10558980	+	0	NA	intron (NM_001009608, intron 3 of 7)	intron (NM_001009608, intron 3 of 7)	91070	NR_106930	102465525		NR_106930	ENSG00000273745	MIR6870	hsa-mir-6870	microRNA 6870	ncRNA
112415	chr19	6216371	6216730	+	0	NA	intron (NM_005934, intron 7 of 11)	G-rich|Low_complexity|Low_complexity	63425	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
152495	chr22	20925701	20925900	+	0	NA	intron (NR_156180, intron 1 of 3)	intron (NR_156180, intron 1 of 3)	8393	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
224341	chr9	6782801	6783480	+	0	NA	intron (NR_148677, intron 1 of 21)	intron (NR_148677, intron 1 of 21)	25167	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
171990	chr4	948851	949150	+	0	NA	intron (NM_001297423, intron 3 of 10)	intron (NM_001297423, intron 3 of 10)	16540	NM_032326	84286		NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
147	chr1	523951	524450	+	0	NA	Intergenic	Intergenic	-28755	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
34626	chr10	133302121	133302630	+	0	NA	intron (NM_001256618, intron 1 of 16)	intron (NM_001256618, intron 1 of 16)	6497	NM_006659	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
231218	chr9	129960151	129960730	+	0	NA	intron (NM_001363755, intron 4 of 15)	intron (NM_001363755, intron 4 of 15)	82749	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
188833	chr5	159103101	159103650	+	0	NA	intron (NR_109890, intron 1 of 2)	intron (NR_109890, intron 1 of 2)	2892	NR_109890	101927740		NR_109890	ENSG00000245812	LINC02202	-	long intergenic non-protein coding RNA 2202	ncRNA
68235	chr14	76957631	76958050	+	0	NA	Intergenic	Intergenic	-1798	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
112688	chr19	7055951	7056680	+	0	NA	3' UTR (NM_001164425, exon 2 of 2)	3' UTR (NM_001164425, exon 2 of 2)	2319	NM_001164425	653657		NM_001164425	ENSG00000182315	MBD3L3	-	methyl-CpG binding domain protein 3 like 3	protein-coding
140835	chr2	236928621	236928880	+	0	NA	Intergenic	LTR73|LTR|ERV1	127417	NR_135202	93463		NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA
235203	chrX	41349721	41349980	+	0	NA	3' UTR (NM_001363819, exon 17 of 17)	3' UTR (NM_001363819, exon 17 of 17)	15684	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
37356	chr11	14974651	14975130	+	0	NA	Intergenic	Intergenic	-2539	NM_001033952	796		NM_001741	ENSG00000110680	CALCA	CALC1|CGRP|CGRP-I|CGRP-alpha|CGRP1|CT|KC|PCT	calcitonin related polypeptide alpha	protein-coding
180681	chr5	19161671	19161830	+	0	NA	Intergenic	L1PA2|LINE|L1	724522	NM_001291957	1016		NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding
166555	chr3	115623451	115624080	+	0	NA	intron (NM_002045, intron 1 of 2)	intron (NM_002045, intron 1 of 2)	255	NM_001130064	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
38497	chr11	45875551	45875850	+	0	NA	intron (NM_021117, intron 11 of 11)	intron (NM_021117, intron 11 of 11)	-9951	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
25394	chr10	6507251	6507750	+	0	NA	intron (NM_001282644, intron 3 of 17)	intron (NM_001282644, intron 3 of 17)	72776	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
84387	chr16	30309321	30309980	+	0	NA	intron (NR_002453, intron 1 of 12)	intron (NR_002453, intron 1 of 12)	25724	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
208522	chr7	70318421	70318680	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	720075	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
222521	chr8	140558521	140558800	+	0	NA	intron (NM_012154, intron 6 of 18)	intron (NM_012154, intron 6 of 18)	46664	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
64805	chr14	34966501	34966700	+	0	NA	intron (NR_151701, intron 2 of 4)	intron (NR_151701, intron 2 of 4)	15966	NR_151701	100506157		NR_151701		SRP54-AS1	-	SRP54 antisense RNA 1	ncRNA
238288	chrX	149480721	149481680	+	0	NA	3' UTR (NM_000202, exon 9 of 9)	3' UTR (NM_000202, exon 9 of 9)	24106	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
42471	chr11	69712071	69712430	+	0	NA	Intergenic	Intergenic	-8228	NM_005117	9965		NM_005117	ENSG00000162344	FGF19	-	fibroblast growth factor 19	protein-coding
64491	chr14	24316251	24316350	+	0	NA	exon (NM_001143919, exon 2 of 2).2	exon (NM_001143919, exon 2 of 2).2	3193	NM_181657	1241		NM_181657	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
168346	chr3	141882551	141882650	+	0	NA	intron (NM_001679, intron 1 of 6)	AluSp|SINE|Alu	5957	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
3891	chr1	17049401	17049800	+	0	NA	intron (NM_003000, intron 1 of 7)	intron (NM_003000, intron 1 of 7)	4432	NM_003000	6390		NM_003000	ENSG00000117118	SDHB	CWS2|IP|MC2DN4|PGL4|PPGL4|SDH|SDH1|SDH2|SDHIP	succinate dehydrogenase complex iron sulfur subunit B	protein-coding
150499	chr21	42818301	42818680	+	0	NA	Intergenic	Intergenic	-38496	NR_135517	101928311		NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
110419	chr19	1962251	1963300	+	0	NA	intron (NM_001319, intron 1 of 11)	L1MB5|LINE|L1	-8226	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
28012	chr10	43195251	43195750	+	0	NA	3' UTR (NM_145313, exon 13 of 13)	3' UTR (NM_145313, exon 13 of 13)	34239	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
140769	chr2	234951771	234952480	+	0	NA	5' UTR (NM_014521, exon 1 of 6)	5' UTR (NM_014521, exon 1 of 6)	108	NM_014521	23677		NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding
29597	chr10	71742101	71743930	+	0	NA	intron (NM_022124, intron 36 of 67)	MLT1H|LTR|ERVL-MaLR	-5165	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
37405	chr11	17230921	17231780	+	0	NA	Intergenic	L1MB3|LINE|L1	-23364	NM_001321380	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
145437	chr20	43470501	43470700	+	0	NA	Intergenic	Intergenic	12704	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
104486	chr17	81128971	81129330	+	0	NA	intron (NM_001080395, intron 3 of 13)	CpG	2798	NM_004920	9625		NM_004920	ENSG00000181409	AATK	AATYK|AATYK1|LMR1|LMTK1|PPP1R77|p35BP	apoptosis associated tyrosine kinase	protein-coding
37891	chr11	34054571	34054730	+	0	NA	intron (NM_203364, intron 2 of 17)	AluSc8|SINE|Alu	2919	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
103773	chr17	78993101	78994030	+	0	NA	exon (NM_138793, exon 4 of 4)	exon (NM_138793, exon 4 of 4)	-13642	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
164141	chr3	56754571	56755600	+	0	NA	exon (NM_001377415, exon 3 of 9)	exon (NM_001377415, exon 3 of 9)	20632	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
49736	chr12	31651921	31652300	+	0	NA	intron (NM_001135864, intron 1 of 3)	LTR9|LTR|ERV1	4950	NM_001135864	254013		NM_173802	ENSG00000139160	ETFBKMT	C12orf72|ETFB-KMT|METTL20	electron transfer flavoprotein subunit beta lysine methyltransferase	protein-coding
1036	chr1	1878501	1878800	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	12437	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
24905	chr10	1050531	1051150	+	0	NA	intron (NM_001317955, intron 2 of 5)	MER6A|DNA|TcMar-Tigger	-1474	NR_134301	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
236713	chrX	77917251	77918150	+	0	NA	intron (NR_104109, intron 1 of 9)	intron (NR_104109, intron 1 of 9)	7007	NR_104109	538		NM_000052	ENSG00000165240	ATP7A	DSMAX|HMNX|MK|MNK|SMAX3	ATPase copper transporting alpha	protein-coding
239510	chrY	56770701	56771380	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-183215	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
78580	chr15	93031871	93032230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	41106	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
9062	chr1	44826271	44828200	+	0	NA	exon (NM_003738, exon 16 of 22)	exon (NM_003738, exon 16 of 22)	15709	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
228146	chr9	96874671	96876200	+	0	NA	Intergenic	MIRb|SINE|MIR	6535	NR_038890	100132781		NR_038890		LOC100132781	-	cyclin Y like 1 pseudogene	pseudo
19335	chr1	173713951	173714050	+	0	NA	promoter-TSS (NM_014458)	promoter-TSS (NM_014458)	-981	NM_014458	27252		NM_014458	ENSG00000076321	KLHL20	KHLHX|KLEIP|KLHLX	kelch like family member 20	protein-coding
37198	chr11	14318401	14318880	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	39845	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
183444	chr5	78993151	78993450	+	0	NA	Intergenic	Intergenic	-7342	NM_198709	411		NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
142839	chr20	17566701	17566900	+	0	NA	intron (NM_001278608, intron 1 of 9)	AluSg7|SINE|Alu	2420	NM_001278608	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
86815	chr16	67859851	67860150	+	0	NA	intron (NM_001322041, intron 1 of 4)	AluY|SINE|Alu	-12307	NM_025082	80152		NM_025082	ENSG00000102901	CENPT	C16orf56|CENP-T|SSMGA	centromere protein T	protein-coding
71263	chr14	105209301	105209880	+	0	NA	3' UTR (NM_001519, exon 18 of 18)	3' UTR (NM_001519, exon 18 of 18)	-28267	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
128640	chr2	61413851	61414150	+	0	NA	intron (NM_014709, intron 2 of 79)	AluSx|SINE|Alu	3377	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
61067	chr13	48305971	48306730	+	0	NA	intron (NM_000321, intron 1 of 26)	AluJr|SINE|Alu	2599	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
106784	chr18	23863121	23863380	+	0	NA	intron (NM_198129, intron 35 of 74)	AluSx1|SINE|Alu	-9770	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
173699	chr4	15654691	15656250	+	0	NA	promoter-TSS (NM_001193535)	promoter-TSS (NM_001193535)	-58	NR_036464	26234		NM_012161	ENSG00000118564	FBXL5	FBL4|FBL5|FLR1	F-box and leucine rich repeat protein 5	protein-coding
31540	chr10	96910451	96910950	+	0	NA	intron (NM_032440, intron 4 of 7)	intron (NM_032440, intron 4 of 7)	77755	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
114742	chr19	13215351	13216450	+	0	NA	intron (NM_023035, intron 38 of 46)	intron (NM_023035, intron 38 of 46)	65489	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
109769	chr19	1127751	1127850	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	4421	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
91345	chr17	4494771	4495530	+	0	NA	Intergenic	Intergenic	-3731	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
82125	chr16	14718551	14718850	+	0	NA	intron (NM_001277324, intron 2 of 7)	intron (NM_001277324, intron 2 of 7)	7011	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
236614	chrX	74420121	74420780	+	0	NA	Intergenic	CpG	-1043	NM_006517	6567		NM_006517	ENSG00000147100	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16 member 2	protein-coding
98016	chr17	45391271	45391630	+	0	NA	Intergenic	L2c|LINE|L2	18936	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
131388	chr2	96256351	96257500	+	0	NA	intron (NM_017849, intron 2 of 3)	HAL1|LINE|L1	9072	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
924	chr1	1709501	1710600	+	0	NA	intron (NR_132739, intron 6 of 19)	L1M4c|LINE|L1	10111	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
205304	chr7	12066671	12066830	+	0	NA	Intergenic	LTR10A|LTR|ERV1	-144544	NM_018374	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
103674	chr17	78792021	78792880	+	0	NA	intron (NM_001385179, intron 20 of 20)	intron (NM_001385179, intron 20 of 20)	-10108	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
154336	chr22	32204201	32204470	+	0	NA	promoter-TSS (NM_001098527)	promoter-TSS (NM_001098527)	38	NM_001364985	10739		NM_006605	ENSG00000128253	RFPL2	RNF79	ret finger protein like 2	protein-coding
205031	chr7	6515401	6515600	+	0	NA	intron (NM_001145118, intron 7 of 21)	AluSx|SINE|Alu	-31348	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
115530	chr19	15449351	15450830	+	0	NA	promoter-TSS (NM_021241)	promoter-TSS (NM_021241)	-134	NM_021241	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
128996	chr2	64769201	64769400	+	0	NA	Intergenic	(TTA)n|Simple_repeat|Simple_repeat	94331	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
220376	chr8	100143901	100144480	+	0	NA	intron (NM_001029860, intron 1 of 4)	intron (NM_001029860, intron 1 of 4)	1627	NR_036491	286151		NM_001029860	ENSG00000156509	FBXO43	EMI2|ERP1|FBX43|OOMD12|OZEMA12|SPGF64	F-box protein 43	protein-coding
20005	chr1	185290921	185291380	+	0	NA	3' UTR (NM_001105518, exon 19 of 19)	3' UTR (NM_001105518, exon 19 of 19)	26093	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
56196	chr12	111446621	111447580	+	0	NA	intron (NM_005475, intron 4 of 7)	intron (NM_005475, intron 4 of 7)	12238	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
130090	chr2	74506751	74508480	+	0	NA	promoter-TSS (NM_032673)	promoter-TSS (NM_032673)	80	NM_032673	84759		NM_032673	ENSG00000115289	PCGF1	2010002K04Rik|NSPC1|RNF3A-2|RNF68	polycomb group ring finger 1	protein-coding
123518	chr19	54221101	54221800	+	0	NA	intron (NR_135494, intron 4 of 11).2	intron (NR_135494, intron 4 of 11).2	1557	NR_135494	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
138318	chr2	203748571	203749100	+	0	NA	Intergenic	L2c|LINE|L2	42196	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
106683	chr18	23235501	23235700	+	0	NA	intron (NM_138375, intron 5 of 9)	MER46C|DNA|TcMar-Tigger	79775	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
151107	chr21	44865151	44866800	+	0	NA	intron (NM_004339, intron 1 of 5)	intron (NM_004339, intron 1 of 5)	7715	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
126762	chr2	30244551	30244850	+	0	NA	intron (NM_030915, intron 2 of 2)	AluJo|SINE|Alu	13166	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
176802	chr4	102525771	102526630	+	0	NA	intron (NM_001382625, intron 3 of 24)	MLT1C|LTR|ERVL-MaLR	-23714	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
170270	chr3	184290471	184290630	+	0	NA	intron (NM_014693, intron 14 of 18)	intron (NM_014693, intron 14 of 18)	-8691	NM_002808	5708		NM_002808	ENSG00000175166	PSMD2	P97|RPN1|S2|TRAP2	proteasome 26S subunit ubiquitin receptor, non-ATPase 2	protein-coding
145896	chr20	45960051	45960150	+	0	NA	intron (NM_022095, intron 14 of 27)	intron (NM_022095, intron 14 of 27)	12103	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
36652	chr11	8008321	8008580	+	0	NA	Intergenic	Intergenic	8059	NR_125366	103581031		NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility 23	ncRNA
140228	chr2	231727151	231727450	+	0	NA	Intergenic	AluSq|SINE|Alu	13986	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
195889	chr6	41703071	41703430	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	30360	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
187934	chr5	148963751	148963850	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	98609	NR_030310	693169		NR_030310	ENSG00000207714	MIR584	MIRN584|hsa-mir-584	microRNA 584	ncRNA
90947	chr17	2633721	2633980	+	0	NA	intron (NM_000430, intron 1 of 10)	L2a|LINE|L2	40196	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
132741	chr2	109510101	109510750	+	0	NA	Intergenic	Intergenic	103242	NM_001321515	151011		NM_144710	ENSG00000186522	SEPTIN10	SEPT10|Septin-10	septin 10	protein-coding
185246	chr5	123438651	123439150	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-15058	NM_001375408	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
129601	chr2	70093551	70093850	+	0	NA	Intergenic	AluYk4|SINE|Alu	6223	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
119654	chr19	40822171	40823000	+	0	NA	Intergenic	AluSz|SINE|Alu	-11485	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
146457	chr20	49699021	49699950	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	14393	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
177608	chr4	121072191	121073130	+	0	NA	promoter-TSS (NM_024574)	promoter-TSS (NM_024574)	-125	NM_024574	79625		NM_024574	ENSG00000173376	NDNF	C4orf31|HH25|NORD	neuron derived neurotrophic factor	protein-coding
10721	chr1	75790271	75791500	+	0	NA	intron (NR_073562, intron 6 of 10)	AluSx|SINE|Alu	1408	NR_002748	26804		NR_002748	ENSG00000201487	SNORD45B	RNU45B|U45b	small nucleolar RNA, C/D box 45B	snoRNA
64390	chr14	24159121	24159380	+	0	NA	intron (NM_001310332, intron 18 of 20).2	AluSq2|SINE|Alu	-2015	NM_001385402	10379		NM_006084	ENSG00000213928	IRF9	IRF-9|ISGF3|ISGF3G|p48	interferon regulatory factor 9	protein-coding
42370	chr11	68753421	68753680	+	0	NA	Intergenic	Intergenic	-2030	NM_004923	9633		NM_004923	ENSG00000132749	TESMIN	CXCDC2|MTL5|MTLT	testis expressed metallothionein like protein	protein-coding
47386	chr12	2752601	2753180	+	0	NA	intron (NR_146317, intron 3 of 3)	CpG	-42080	NM_002014	2288		NM_002014	ENSG00000004478	FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	FKBP prolyl isomerase 4	protein-coding
192487	chr6	24954771	24954930	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-18890	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
161794	chr3	45145951	45146450	+	0	NA	intron (NM_022842, intron 1 of 8)	CpG	178	NM_022842	64866		NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
17785	chr1	159211571	159211730	+	0	NA	Intergenic	Intergenic	6775	NM_001122951	2532		NM_002036	ENSG00000213088	ACKR1	CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1	atypical chemokine receptor 1 (Duffy blood group)	protein-coding
119904	chr19	41575721	41577000	+	0	NA	intron (NM_033543, intron 1 of 6)	intron (NM_033543, intron 1 of 6)	194	NM_001098506	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
129951	chr2	73926171	73927330	+	0	NA	promoter-TSS (NR_134895)	promoter-TSS (NR_134895)	-130	NR_134898	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
210675	chr7	100543321	100543650	+	0	NA	intron (NM_006076, intron 1 of 11)	intron (NM_006076, intron 1 of 11)	4282	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
177958	chr4	139018351	139018450	+	0	NA	intron (NM_012118, intron 1 of 2)	intron (NM_012118, intron 1 of 2)	2619	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
64365	chr14	24123571	24123850	+	0	NA	non-coding (NR_028100, exon 14 of 14)	non-coding (NR_028100, exon 14 of 14)	-7756	NM_203402	161247		NM_203402	ENSG00000139914	FITM1	FIT1	fat storage inducing transmembrane protein 1	protein-coding
178393	chr4	147518801	147519130	+	0	NA	intron (NM_001166055, intron 2 of 5)	intron (NM_001166055, intron 2 of 5)	37868	NM_001354797	1909		NM_001957	ENSG00000151617	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR	endothelin receptor type A	protein-coding
2551	chr1	9733571	9733730	+	0	NA	intron (NM_014944, intron 14 of 17)	intron (NM_014944, intron 14 of 17)	42183	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
193129	chr6	29010921	29011730	+	0	NA	Intergenic	Intergenic	-5713	NM_001010877	282890		NM_001010877	ENSG00000197935	ZNF311	zf31	zinc finger protein 311	protein-coding
33735	chr10	122381571	122381730	+	0	NA	intron (NM_001377254, intron 2 of 11)	MSTA|LTR|ERVL-MaLR	-4419	NM_001195608	59338		NM_021622	ENSG00000107679	PLEKHA1	TAPP1	pleckstrin homology domain containing A1	protein-coding
5741	chr1	26468851	26469380	+	0	NA	exon (NM_001319959, exon 9 of 9)	exon (NM_001319959, exon 9 of 9)	-1578	NR_125953	101928324		NR_125952		DHDDS-AS1	-	DHDDS antisense RNA 1	ncRNA
94047	chr17	27329201	27329600	+	0	NA	Intergenic	Intergenic	35286	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
139582	chr2	224959021	224959280	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	-12101	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
109228	chr19	493401	493800	+	0	NA	Intergenic	Intergenic	-1976	NM_001385598	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
99189	chr17	49491571	49492130	+	0	NA	Intergenic	Intergenic	-3443	NM_002507	4804		NM_002507	ENSG00000064300	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
10883	chr1	78142651	78143530	+	0	NA	Intergenic	Intergenic	-86509	NR_027310	149047		NM_144700	ENSG00000237413	MGC27382	-	uncharacterized MGC27382	ncRNA
231379	chr9	130692021	130692600	+	0	NA	Intergenic	Intergenic	-1450	NM_001282709	23404		NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|SHRF|hRrp4p|p7	exosome component 2	protein-coding
101377	chr17	67289471	67289630	+	0	NA	Intergenic	Intergenic	-44354	NM_001330447	9931		NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
57997	chr12	124334921	124335780	+	0	NA	intron (NM_001077261, intron 40 of 47)	intron (NM_001077261, intron 40 of 47)	1892	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
51844	chr12	53464701	53465330	+	0	NA	TTS (NR_109828)	TTS (NR_109828)	547	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
108938	chr18	79483921	79484180	+	0	NA	intron (NM_001278670, intron 8 of 8)	intron (NM_001278670, intron 8 of 8)	83751	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
116550	chr19	18218101	18218650	+	0	NA	exon (NM_001369701, exon 9 of 14)	exon (NM_001369701, exon 9 of 14)	6118	NM_001098819	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
118876	chr19	38671001	38671430	+	0	NA	intron (NM_004924, intron 1 of 20)	Tigger19a|DNA|TcMar-Tigger	23566	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
206051	chr7	27153701	27153900	+	0	NA	TTS (NM_006896)	TTS (NM_006896)	-1217	NM_001384335	3200		NM_030661	ENSG00000105997	HOXA3	HOX1|HOX1E	homeobox A3	protein-coding
6269	chr1	27590251	27590600	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	13069	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
4467	chr1	21349021	21349280	+	0	NA	Intergenic	Intergenic	-3646	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
119753	chr19	41283451	41284030	+	0	NA	intron (NM_144732, intron 7 of 14)	AluSx|SINE|Alu	18659	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
221642	chr8	125929421	125929750	+	0	NA	intron (NR_038447, intron 3 of 3)	intron (NR_038447, intron 3 of 3)	21612	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
79286	chr16	537201	538400	+	0	NA	intron (NM_005632, intron 3 of 13)	CpG	2484	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	ncRNA
65173	chr14	49599641	49600680	+	0	NA	intron (NM_203467, intron 1 of 2)	intron (NM_203467, intron 1 of 2)	1220	NM_152329	122769		NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
160596	chr3	31225951	31226700	+	0	NA	Intergenic	MER58D|DNA|hAT-Charlie	-64538	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
15357	chr1	150022471	150022650	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-11834	NM_020205	56957		NM_020205	ENSG00000264522	OTUD7B	CEZANNE|ZA20D1	OTU deubiquitinase 7B	protein-coding
8203	chr1	39605971	39607050	+	0	NA	Intergenic	AluYa5|SINE|Alu	-29720	NM_003819	8761		NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
162410	chr3	48243251	48244030	+	0	NA	intron (NM_016089, intron 1 of 3)	AluSq|SINE|Alu	2536	NM_016089	51385		NM_016089	ENSG00000164048	ZNF589	SZF1	zinc finger protein 589	protein-coding
179705	chr4	190177051	190177150	+	0	NA	intron (NR_137167, intron 2 of 5).2	BSR/Beta|Satellite|Satellite	3326	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
226587	chr9	73107581	73108030	+	0	NA	Intergenic	Intergenic	-44060	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
98964	chr17	48676771	48677280	+	0	NA	Intergenic	AluJb|SINE|Alu	-44466	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
103891	chr17	79796421	79798100	+	0	NA	promoter-TSS (NM_020649)	promoter-TSS (NM_020649)	-183	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
69277	chr14	93068701	93069300	+	0	NA	non-coding (NR_002808, exon 1 of 1)	non-coding (NR_002808, exon 1 of 1)	1548	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
152162	chr22	20031701	20032650	+	0	NA	promoter-TSS (NR_029706)	promoter-TSS (NR_029706)	-964	NR_029706	406961		NR_029706	ENSG00000208023	MIR185	MIRN185|miR-185	microRNA 185	ncRNA
79073	chr16	167071	167230	+	0	NA	TTS (NM_001003938)	TTS (NM_001003938)	1172	NM_001003938	3042		NM_001003938	ENSG00000206177	HBM	HBAP2|HBK	hemoglobin subunit mu	protein-coding
11410	chr1	89704321	89704580	+	0	NA	intron (NM_032270, intron 2 of 2)	L1ME3G|LINE|L1	71330	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
161693	chr3	43477051	43478780	+	0	NA	intron (NM_001346467, intron 12 of 13)	intron (NM_001346467, intron 12 of 13)	-125953	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
199336	chr6	113920751	113921130	+	0	NA	non-coding (NR_027060, exon 4 of 4)	non-coding (NR_027060, exon 4 of 4)	16553	NR_027060	285759		NM_173673	ENSG00000175967	LINC02880	-	long intergenic non-protein coding RNA 2880	ncRNA
129865	chr2	73073151	73073250	+	0	NA	TTS (NM_015470)	TTS (NM_015470)	-1488	NM_001371740	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
97501	chr17	43905271	43905630	+	0	NA	intron (NM_001278370, intron 1 of 12)	intron (NM_001278370, intron 1 of 12)	2086	NM_001278374	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
239048	chrY	7271951	7273000	+	0	NA	Intergenic	Intergenic	-1497	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
52730	chr12	56625251	56625550	+	0	NA	intron (NM_013449, intron 1 of 28)	AluSx1|SINE|Alu	4926	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
225061	chr9	33239871	33240230	+	0	NA	promoter-TSS (NM_014471)	promoter-TSS (NM_014471)	-117	NM_014471	27290		NM_014471	ENSG00000122711	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor Kazal type 4	protein-coding
101520	chr17	67829021	67829780	+	0	NA	intron (NM_182641, intron 1 of 27)	L1PA8A|LINE|L1	3897	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
18377	chr1	161382101	161382900	+	0	NA	Intergenic	Intergenic	-14624	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
211021	chr7	102397801	102398300	+	0	NA	intron (NR_038967, intron 5 of 8)	AluY|SINE|Alu	1687	NM_024653	79706		NM_024653	ENSG00000128563	PRKRIP1	C114|KRBOX3	PRKR interacting protein 1	protein-coding
70898	chr14	103919951	103920250	+	0	NA	intron (NM_004894, intron 1 of 3)	AluSc|SINE|Alu	1429	NM_001127393	9556		NM_004894	ENSG00000156411	ATP5MJ	6.8PL|ATP5MPL|C14orf2|MLQ|MP68|PLPM	ATP synthase membrane subunit j	protein-coding
235156	chrX	41116851	41117600	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	31780	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
124508	chr2	10121	11070	+	0	NA	Intergenic	Intergenic	35910	NM_001077710	642273		NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
20738	chr1	200938971	200939480	+	0	NA	intron (NR_147176, intron 4 of 15)	AluJo|SINE|Alu	10281	NR_147176	647215		NR_147176	ENSG00000293444	MROH3P	C1orf81	maestro heat like repeat family member 3, pseudogene	pseudo
19554	chr1	179031671	179032230	+	0	NA	intron (NM_001324311, intron 1 of 7)	intron (NM_001324311, intron 1 of 7)	5826	NM_001324311	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
21036	chr1	203028351	203029500	+	0	NA	intron (NM_001304332, intron 1 of 28)	intron (NM_001304332, intron 1 of 28)	2434	NM_001304332	8497		NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding
129739	chr2	70962221	70962550	+	0	NA	intron (NM_001692, intron 8 of 13)	intron (NM_001692, intron 8 of 13)	-13774	NR_110273	101927750		NR_110273	ENSG00000239322	ATP6V1B1-AS1	-	ATP6V1B1 antisense RNA 1	ncRNA
231073	chr9	129667171	129667330	+	0	NA	intron (NM_016307, intron 1 of 3)	intron (NM_016307, intron 1 of 3)	1603	NM_016307	51450		NM_016307	ENSG00000167157	PRRX2	PMX2|PRX2	paired related homeobox 2	protein-coding
226806	chr9	77171171	77171750	+	0	NA	Intergenic	Intergenic	-5985	NM_015186	23230		NM_015186	ENSG00000197969	VPS13A	BLTP5A|CHAC|CHOREIN	vacuolar protein sorting 13 homolog A	protein-coding
135650	chr2	168354651	168355150	+	0	NA	Intergenic	Intergenic	-101372	NM_203463	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
108074	chr18	59904251	59905200	+	0	NA	TTS (NM_001382615)	TTS (NM_001382615)	4729	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
46682	chr11	128745721	128746350	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-50012	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
200123	chr6	130216721	130217180	+	0	NA	intron (NM_001258275, intron 3 of 13)	intron (NM_001258275, intron 3 of 13)	-1065	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
70191	chr14	100447351	100447600	+	0	NA	intron (NM_001350949, intron 2 of 6)	intron (NM_001350949, intron 2 of 6)	70990	NM_001350947	79446		NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
20569	chr1	198727301	198727500	+	0	NA	intron (NM_002838, intron 15 of 32)	L2a|LINE|L2	88360	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
43228	chr11	75444401	75444600	+	0	NA	intron (NM_030792, intron 9 of 16)	intron (NM_030792, intron 9 of 16)	7827	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
160568	chr3	30694651	30694950	+	0	NA	TTS (NM_003242)	TTS (NM_003242)	88199	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
54012	chr12	75481791	75482200	+	0	NA	exon (NM_006851, exon 2 of 6)	exon (NM_006851, exon 2 of 6)	1240	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
170372	chr3	184636701	184637630	+	0	NA	Intergenic	MIRb|SINE|MIR	74899	NM_022149	64110		NM_022149	ENSG00000177383	MAGEF1	MAGE-F1	MAGE family member F1	protein-coding
68153	chr14	75566021	75566950	+	0	NA	Intergenic	Intergenic	-12135	NM_017791	55640		NM_017791	ENSG00000119686	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2	FLVCR choline and putative heme transporter 2	protein-coding
58905	chr13	19657671	19658030	+	0	NA	intron (NM_017520, intron 5 of 13)	intron (NM_017520, intron 5 of 13)	24191	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
190788	chr6	691121	691380	+	0	NA	intron (NR_073064, intron 1 of 29)	intron (NR_073064, intron 1 of 29)	1889	NM_018303	55770		NM_018303	ENSG00000112685	EXOC2	NEDFACH|SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
19042	chr1	169696471	169697030	+	0	NA	intron (NM_000655, intron 7 of 8)	intron (NM_000655, intron 7 of 8)	12107	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
135900	chr2	171317601	171318100	+	0	NA	non-coding (NR_135568, exon 7 of 7)	non-coding (NR_135568, exon 7 of 7)	-86557	NM_001136554	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
106732	chr18	23523301	23524100	+	0	NA	intron (NM_001276342, intron 8 of 17)	AluJr4|SINE|Alu	20189	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
98328	chr17	46263551	46263650	+	0	NA	Intergenic	AluSp|SINE|Alu	-31531	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
85112	chr16	34097051	34097750	+	0	NA	Intergenic	Intergenic	-66178	NR_162093	113218496		NR_162093		MIR9901	-	microRNA 9901	ncRNA
178142	chr4	142287221	142287680	+	0	NA	intron (NR_169617, intron 7 of 22)	intron (NR_169617, intron 7 of 22)	18382	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
1080	chr1	1926071	1926980	+	0	NA	intron (NM_001304360, intron 30 of 38)	intron (NM_001304360, intron 30 of 38)	-7246	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
137325	chr2	196080521	196081000	+	0	NA	Intergenic	Intergenic	-11923	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
96709	chr17	41548771	41549580	+	0	NA	TTS (NR_038442)	TTS (NR_038442)	5320	NR_038442	147093		NR_038442	ENSG00000226629	LINC00974	-	long intergenic non-protein coding RNA 974	ncRNA
187078	chr5	140176801	140177250	+	0	NA	intron (NM_032412, intron 1 of 2)	AluY|SINE|Alu	1837	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
25743	chr10	9097251	9098180	+	0	NA	Intergenic	Intergenic	-177898	NR_108039	100507163		NR_108039		LINC00709	-	long intergenic non-protein coding RNA 709	ncRNA
72449	chr15	32276221	32276730	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	66202	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
91032	chr17	2830621	2830880	+	0	NA	intron (NM_001100398, intron 2 of 23)	AluSc|SINE|Alu	34312	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
73255	chr15	41821951	41822550	+	0	NA	exon (NM_001128608, exon 27 of 32)	exon (NM_001128608, exon 27 of 32)	-5835	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
178099	chr4	140523451	140524600	+	0	NA	promoter-TSS (NM_153702)	promoter-TSS (NM_153702)	-143	NM_153702	255520		NM_153702	ENSG00000179387	ELMOD2	9830169G11Rik	ELMO domain containing 2	protein-coding
50912	chr12	49299601	49299800	+	0	NA	intron (NR_120449, intron 4 of 7)	AluY|SINE|Alu	4553	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
193994	chr6	31774251	31774730	+	0	NA	intron (NM_025258, intron 5 of 16).6	intron (NM_025258, intron 5 of 16).6	2838	NM_025258	80737		NM_025258	ENSG00000204396	VWA7	C6orf27|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding
212679	chr7	129617721	129617980	+	0	NA	intron (NM_005011, intron 1 of 10)	intron (NM_005011, intron 1 of 10)	6130	NM_001293164	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
165535	chr3	100665171	100665730	+	0	NA	intron (NM_001308362, intron 8 of 9)	intron (NM_001308362, intron 8 of 9)	29912	NM_001308362	84873		NM_032787	ENSG00000144820	ADGRG7	GPR128	adhesion G protein-coupled receptor G7	protein-coding
123040	chr19	51194621	51194970	+	0	NA	Intergenic	LTR43B|LTR|ERV1	12214	NR_107041	102465873		NR_107041	ENSG00000278617	MIR8074	hsa-mir-8074	microRNA 8074	ncRNA
138279	chr2	203702001	203702400	+	0	NA	Intergenic	L1PA8|LINE|L1	-4275	NM_001243078	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
18668	chr1	167121121	167121850	+	0	NA	intron (NM_001080426, intron 5 of 5)	CpG	27410	NM_001080426	92235		NM_001080426	ENSG00000198842	STYXL2	DUSP27	serine/threonine/tyrosine interacting like 2	protein-coding
81085	chr16	4347201	4347400	+	0	NA	intron (NM_001201479, intron 27 of 30)	AluJb|SINE|Alu	4021	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
208277	chr7	65871671	65871900	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1289	NM_173517	154807		NM_173517	ENSG00000196715	VKORC1L1	-	vitamin K epoxide reductase complex subunit 1 like 1	protein-coding
165902	chr3	106333971	106334730	+	0	NA	Intergenic	MER57E1|LTR|ERV1	-464949	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
60920	chr13	46200051	46200550	+	0	NA	Intergenic	L2a|LINE|L2	-11628	NM_001282460	220416		NM_001024609	ENSG00000173988	LRRC63	-	leucine rich repeat containing 63	protein-coding
79460	chr16	731301	732130	+	0	NA	intron (NM_022493, intron 8 of 10)	intron (NM_022493, intron 8 of 10)	4609	NM_032304	84264		NM_032304	ENSG00000103253	HAGHL	-	hydroxyacylglutathione hydrolase like	protein-coding
79108	chr16	200801	201000	+	0	NA	intron (NM_018032, intron 5 of 8)	intron (NM_018032, intron 5 of 8)	20441	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
39033	chr11	47764101	47764300	+	0	NA	intron (NM_015308, intron 2 of 16)	AluSx|SINE|Alu	3141	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
188650	chr5	157239051	157239780	+	0	NA	intron (NM_005546, intron 9 of 16)	MER68|LTR|ERVL	-26708	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
200770	chr6	137861651	137861950	+	0	NA	intron (NR_049793, intron 3 of 3)	L2a|LINE|L2	-5459	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
36959	chr11	11231171	11231400	+	0	NA	Intergenic	Intergenic	121965	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
117220	chr19	19413321	19413600	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	7785	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
113401	chr19	9325351	9325650	+	0	NA	intron (NM_001202425, intron 1 of 8)	intron (NM_001202425, intron 1 of 8)	805	NM_001202425	100529215		NM_001172650	ENSG00000270011	ZNF559-ZNF177	-	ZNF559-ZNF177 readthrough	protein-coding
168218	chr3	141273701	141274100	+	0	NA	intron (NM_001282728, intron 3 of 6)	intron (NM_001282728, intron 3 of 6)	42075	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
123454	chr19	54147921	54148180	+	0	NA	intron (NM_014516, intron 10 of 17).8	intron (NM_014516, intron 10 of 17).8	10288	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
191974	chr6	16152521	16153230	+	0	NA	Intergenic	L2c|LINE|L2	11319	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
165652	chr3	101830051	101830350	+	0	NA	intron (NM_001005474, intron 2 of 12)	intron (NM_001005474, intron 2 of 12)	2210	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
134745	chr2	144659571	144660130	+	0	NA	Intergenic	Intergenic	-8117	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
65008	chr14	38210871	38211480	+	0	NA	3' UTR (NM_001049, exon 3 of 3)	3' UTR (NM_001049, exon 3 of 3)	3271	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
79801	chr16	1397371	1397930	+	0	NA	TTS (NM_001037125)	TTS (NM_001037125)	17054	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
79495	chr16	780521	781050	+	0	NA	Intergenic	Intergenic	7596	NM_001369658	113000		NM_058192	ENSG00000007376	RPUSD1	C16orf40|RLUCL	RNA pseudouridine synthase domain containing 1	protein-coding
118849	chr19	38639851	38639950	+	0	NA	Intergenic	Intergenic	-7749	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
74864	chr15	63554521	63554780	+	0	NA	intron (NR_046342, intron 5 of 15)	intron (NR_046342, intron 5 of 15)	-42737	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
73614	chr15	44567351	44567650	+	0	NA	exon (NM_001160227, exon 34 of 38)	exon (NM_001160227, exon 34 of 38)	30353	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
231346	chr9	130277621	130278000	+	0	NA	intron (NM_001291815, intron 1 of 97)	(ACC)n|Simple_repeat|Simple_repeat	12050	NM_001291815	256158		NM_144655	ENSG00000148357	HMCN2	-	hemicentin 2	protein-coding
152934	chr22	22815371	22816200	+	0	NA	Intergenic	Intergenic	-6991	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
188900	chr5	160021721	160022200	+	0	NA	intron (NM_001282500, intron 2 of 7)	intron (NM_001282500, intron 2 of 7)	12821	NM_003314	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
161288	chr3	39323871	39324430	+	0	NA	Intergenic	AluJb|SINE|Alu	-5559	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
126236	chr2	27063551	27064800	+	0	NA	intron (NM_021831, intron 11 of 14)	intron (NM_021831, intron 11 of 14)	7479	NM_001134693	100128731		NM_001134693	ENSG00000228474	OST4	-	oligosaccharyltransferase complex subunit 4, non-catalytic	protein-coding
176087	chr4	82897301	82897500	+	0	NA	TTS (NR_132760)	TTS (NR_132760)	825	NR_132760	106633809		NR_132760		SNORD144	SNORA97|ZL6	small nucleolar RNA, C/D box 144	snoRNA
73775	chr15	45617151	45617730	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-13708	NM_001271213	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
197945	chr6	89926751	89927250	+	0	NA	3' UTR (NM_001170794, exon 7 of 7)	3' UTR (NM_001170794, exon 7 of 7)	32531	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
64020	chr14	22507071	22508280	+	0	NA	Intergenic	Intergenic	-24716	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
95584	chr17	37089621	37090580	+	0	NA	intron (NM_198836, intron 54 of 55).2	intron (NM_198836, intron 54 of 55).2	56355	NR_036056	100422969		NR_036056	ENSG00000276326	MIR2909	-	microRNA 2909	ncRNA
208026	chr7	55641951	55642050	+	0	NA	Intergenic	L1M3f|LINE|L1	46032	NR_027340	360132		NM_182827	ENSG00000291029	FKBP9P1	FKBP9L	FKBP prolyl isomerase 9 pseudogene 1	pseudo
187162	chr5	140566551	140566830	+	0	NA	5' UTR (NM_080670, exon 3 of 3)	5' UTR (NM_080670, exon 3 of 3)	-2086	NM_133174	10307		NM_006051	ENSG00000113108	APBB3	FE65L2|SRA	amyloid beta precursor protein binding family B member 3	protein-coding
1919	chr1	6469951	6470380	+	0	NA	intron (NM_001042665, intron 16 of 20)	intron (NM_001042665, intron 16 of 20)	-3970	NM_148966	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
14382	chr1	144159021	144159330	+	0	NA	Intergenic	Intergenic	89030	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
66299	chr14	61399401	61399600	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	78057	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
67762	chr14	73723271	73724500	+	0	NA	intron (NM_001043318, intron 9 of 11)	intron (NM_001043318, intron 9 of 11)	-9501	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
143928	chr20	32737471	32738630	+	0	NA	intron (NM_053041, intron 1 of 8)	intron (NM_053041, intron 1 of 8)	5417	NM_001099339	149951		NM_053041	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
125103	chr2	9740621	9740880	+	0	NA	Intergenic	U4|snRNA|snRNA	-102692	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
10130	chr1	59477401	59477600	+	0	NA	intron (NM_001244714, intron 4 of 13)	intron (NM_001244714, intron 4 of 13)	-38130	NM_001278224	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
16793	chr1	155545901	155546330	+	0	NA	intron (NM_018489, intron 1 of 27)	AluSz|SINE|Alu	-15927	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
136853	chr2	186488621	186489080	+	0	NA	intron (NM_018471, intron 1 of 9)	intron (NM_018471, intron 1 of 9)	2590	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
167838	chr3	133881851	133882530	+	0	NA	intron (NM_016577, intron 1 of 7)	MLT1E1A|LTR|ERVL-MaLR	13657	NM_001363953	51560		NM_016577	ENSG00000154917	RAB6B	-	RAB6B, member RAS oncogene family	protein-coding
128188	chr2	53913771	53914030	+	0	NA	intron (NM_014614, intron 20 of 46)	intron (NM_014614, intron 20 of 46)	-53867	NM_001164165	100302652		NM_001164165	ENSG00000115239	GPR75-ASB3	ASB-3|ASB3	GPR75-ASB3 readthrough	protein-coding
233093	chr9	137109101	137110700	+	0	NA	TTS (NM_013379)	TTS (NM_013379)	4833	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
50657	chr12	48817001	48817200	+	0	NA	intron (NM_001206916, intron 1 of 12)	intron (NM_001206916, intron 1 of 12)	-1396	NM_000725	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
59548	chr13	27270571	27272030	+	0	NA	intron (NM_001331126, intron 1 of 3)	CpG	123	NM_001331126	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
114177	chr19	11382801	11383100	+	0	NA	non-coding (NR_033663, exon 2 of 8)	non-coding (NR_033663, exon 2 of 8)	1364	NM_000121	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
45530	chr11	118746301	118747200	+	0	NA	Intergenic	FLAM_A|SINE|Alu	44198	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
185279	chr5	126419271	126419450	+	0	NA	intron (NM_001146319, intron 1 of 13)	MSTA|LTR|ERVL-MaLR	-3786	NM_001146320	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
204448	chr7	3897351	3897680	+	0	NA	intron (NM_152744, intron 5 of 44)	L1MB3|LINE|L1	-232170	NM_001079653	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
14518	chr1	144838871	144839430	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	120979	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
121118	chr19	45975971	45976730	+	0	NA	Intergenic	(ACAC)n|Simple_repeat|Simple_repeat	-2485	NM_002516	4858		NM_002516	ENSG00000104967	NOVA2	ANOVA|NEDASB|NOVA-2|NOVA3	NOVA alternative splicing regulator 2	protein-coding
18179	chr1	160808451	160808550	+	0	NA	intron (NM_001261456, intron 2 of 9)	L1PB4|LINE|L1	12326	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
153507	chr22	26495121	26495430	+	0	NA	TTS (NM_001013694)	TTS (NM_001013694)	11398	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
88124	chr16	81605171	81605330	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-6098	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
138246	chr2	203155221	203155480	+	0	NA	intron (NM_001378026, intron 35 of 55)	L2|LINE|L2	-83668	NR_163981	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
1637	chr1	3777121	3777780	+	0	NA	Intergenic	Intergenic	4701	NM_001163724	388588		NM_001163724	ENSG00000235169	SMIM1	Vel	small integral membrane protein 1 (Vel blood group)	protein-coding
153886	chr22	30286051	30286150	+	0	NA	intron (NM_001037666, intron 6 of 8)	intron (NM_001037666, intron 6 of 8)	3405	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
218824	chr8	59115501	59116480	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	3157	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
163673	chr3	52230751	52230850	+	0	NA	intron (NM_007284, intron 6 of 8)	intron (NM_007284, intron 6 of 8)	-4637	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
98098	chr17	45605701	45605900	+	0	NA	Intergenic	AluSz|SINE|Alu	-3938	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
212646	chr7	129500071	129500500	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-2246	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
183707	chr5	80979721	80979980	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-18943	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
11151	chr1	86866021	86866280	+	0	NA	intron (NM_203341, intron 3 of 3)	AluJo|SINE|Alu	47976	NM_004261	9403		NM_004261	ENSG00000183291	SELENOF	SEP15	selenoprotein F	protein-coding
15159	chr1	148954501	148955400	+	0	NA	intron (NM_001350520, intron 1 of 39)	intron (NM_001350520, intron 1 of 39)	2493	NM_001350520	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
56118	chr12	110772671	110773630	+	0	NA	Intergenic	LTR19B|LTR|ERV1	-30259	NM_002710	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
112140	chr19	5612601	5613100	+	0	NA	intron (NM_014649, intron 5 of 20)	intron (NM_014649, intron 5 of 20)	9926	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
101871	chr17	74276621	74276880	+	0	NA	intron (NM_001172810, intron 1 of 13)	intron (NM_001172810, intron 1 of 13)	2516	NM_023036	64446		NM_023036	ENSG00000171595	DNAI2	CILD9|DIC2|oda6	dynein axonemal intermediate chain 2	protein-coding
72813	chr15	40103221	40103480	+	0	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	2736	NM_001003942	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
76788	chr15	77017121	77018500	+	0	NA	intron (NM_001321136, intron 2 of 15)	intron (NM_001321136, intron 2 of 15)	22684	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
190294	chr5	179593001	179593400	+	0	NA	intron (NM_001040452, intron 10 of 17).2	AluSz|SINE|Alu	10541	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
166684	chr3	120350621	120351050	+	0	NA	Intergenic	AluJb|SINE|Alu	-1481	NM_001099678	116064		NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
69757	chr14	99055571	99056700	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	216062	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
40559	chr11	64338501	64338700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1604	NM_032251	283234		NM_032251	ENSG00000168071	CCDC88B	BRLZ|CCDC88|HKRP3|gipie	coiled-coil domain containing 88B	protein-coding
222463	chr8	139705671	139706400	+	0	NA	Intergenic	CpG-27595	-2912	NM_001282534	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
155126	chr22	37636201	37637050	+	0	NA	Intergenic	Intergenic	-3044	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
99387	chr17	49973871	49974030	+	0	NA	3' UTR (NM_001934, exon 2 of 2)	3' UTR (NM_001934, exon 2 of 2)	1184	NM_001934	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
56811	chr12	120214921	120215580	+	0	NA	exon (NM_001243756, exon 7 of 11)	exon (NM_001243756, exon 7 of 11)	13959	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
11858	chr1	92993851	92994450	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-32628	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
228599	chr9	104993701	104994050	+	0	NA	Intergenic	Intergenic	-65720	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
233399	chr9	137559201	137559780	+	0	NA	intron (NM_001346372, intron 8 of 8)	LTR13|LTR|ERVK	7611	NM_032477	64975		NM_032477	ENSG00000182154	MRPL41	BMRP|MRP-L27|MRPL27|PIG3|RPML27|mL41	mitochondrial ribosomal protein L41	protein-coding
199517	chr6	118709901	118711280	+	0	NA	promoter-TSS (NM_001178035)	promoter-TSS (NM_001178035)	-515	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
103397	chr17	78171301	78171580	+	0	NA	intron (NM_001320523, intron 2 of 2)	intron (NM_001320523, intron 2 of 2)	2859	NM_004710	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
176314	chr4	87425001	87425630	+	0	NA	intron (NM_024047, intron 1 of 7)	AluJr|SINE|Alu	2718	NM_198038	53343		NM_024047	ENSG00000170502	NUDT9	NUDT10	nudix hydrolase 9	protein-coding
191038	chr6	3179721	3180180	+	0	NA	Intergenic	Intergenic	15817	NR_038296	100507194		NR_038295	ENSG00000230269	LINC02525	TP53LC14|lncNB1	long intergenic non-protein coding RNA 2525	ncRNA
163774	chr3	52381521	52382050	+	0	NA	exon (NM_015512, exon 49 of 78)	exon (NM_015512, exon 49 of 78)	28223	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
175561	chr4	75630101	75631530	+	0	NA	promoter-TSS (NM_001330724)	promoter-TSS (NM_001330724)	-287	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
62452	chr13	99348971	99349750	+	0	NA	intron (NR_026644, intron 7 of 8)	LTR13A|LTR|ERVK	-2060	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
137541	chr2	197221621	197221880	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	23759	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
199491	chr6	118655601	118656000	+	0	NA	intron (NM_001178035, intron 1 of 13)	LTR78B|LTR|ERV1	-4209	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
132412	chr2	105806121	105806400	+	0	NA	intron (NM_001004722, intron 1 of 3)	AluY|SINE|Alu	-45587	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
52121	chr12	54200071	54200230	+	0	NA	Intergenic	Intergenic	-11156	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
169669	chr3	171625201	171625450	+	0	NA	intron (NM_001130081, intron 22 of 25)	L1PA3|LINE|L1	-164917	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
37116	chr11	13303351	13304130	+	0	NA	intron (NR_147787, intron 1 of 19)	MLT1J2|LTR|ERVL-MaLR	25950	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
199760	chr6	125831671	125832600	+	0	NA	intron (NM_001199621, intron 2 of 14)	L3|LINE|CR1	-13277	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
28243	chr10	45557201	45557950	+	0	NA	intron (NM_145021, intron 1 of 6)	intron (NM_145021, intron 1 of 6)	-22204	NM_001002266	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
97429	chr17	43528621	43528880	+	0	NA	intron (NM_001369366, intron 12 of 12)	intron (NM_001369366, intron 12 of 12)	1685	NM_001261439	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
167467	chr3	129112271	129113030	+	0	NA	intron (NM_001204890, intron 11 of 12)	MARNA|DNA|TcMar-Mariner	9154	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
7972	chr1	37823021	37823880	+	0	NA	intron (NM_005955, intron 8 of 10)	AluJb|SINE|Alu	-15242	NM_024640	79693		NM_024640	ENSG00000196449	YRDC	DRIP3|GAMOS10|IRIP|SUA5	yrdC N6-threonylcarbamoyltransferase domain containing	protein-coding
62234	chr13	98525451	98526100	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-3650	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
152078	chr22	19754971	19755130	+	0	NA	Intergenic	Intergenic	-1653	NM_005992	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
196563	chr6	44121721	44122200	+	0	NA	intron (NM_001318767, intron 1 of 2)	intron (NM_001318767, intron 1 of 2)	4307	NM_001318770	64928		NM_032111	ENSG00000180992	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32|uL14m	mitochondrial ribosomal protein L14	protein-coding
20820	chr1	201348171	201348430	+	0	NA	Intergenic	Intergenic	29380	NM_001001430	7139		NM_000364	ENSG00000118194	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T2, cardiac type	protein-coding
212990	chr7	130990451	130991250	+	0	NA	intron (NR_109855, intron 2 of 4)	L2c|LINE|L2	77386	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
52828	chr12	57047151	57048200	+	0	NA	exon (NM_001256041, exon 5 of 29)	exon (NM_001256041, exon 5 of 29)	2454	NM_005379	4640		NM_005379	ENSG00000166866	MYO1A	BBMI|DFNA48|MIHC|MYHL	myosin IA	protein-coding
215458	chr7	157932751	157933080	+	0	NA	intron (NM_130842, intron 10 of 21)	intron (NM_130842, intron 10 of 21)	78330	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
76123	chr15	72521671	72522030	+	0	NA	intron (NM_005744, intron 2 of 13)	intron (NM_005744, intron 2 of 13)	47520	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
93407	chr17	18366201	18366850	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2962	NM_148918	6470		NM_004169	ENSG00000176974	SHMT1	CSHMT|SHMT	serine hydroxymethyltransferase 1	protein-coding
166783	chr3	122501221	122501480	+	0	NA	intron (NM_002264, intron 1 of 13)	L1M4b|LINE|L1	13589	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
205812	chr7	24443671	24443830	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-129702	NM_016447	51678		NM_016447	ENSG00000105926	PALS2	MPP6|VAM-1|VAM1|p55T	protein associated with LIN7 2, MAGUK p55 family member	protein-coding
169580	chr3	170768421	170768680	+	0	NA	Intergenic	Intergenic	101645	NR_135259	200916		NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22 like 1	protein-coding
114042	chr19	10958601	10959380	+	0	NA	Intergenic	MIRc|SINE|MIR	-2040	NM_001374457	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
106084	chr18	9133321	9133650	+	0	NA	non-coding (NR_110771, exon 2 of 4)	non-coding (NR_110771, exon 2 of 4)	3235	NR_110771	101927275		NR_110771	ENSG00000266053	NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
12751	chr1	109622921	109623200	+	0	NA	promoter-TSS (NM_001257361)	promoter-TSS (NM_001257361)	-928	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
226969	chr9	81619821	81620080	+	0	NA	intron (NM_001303104, intron 9 of 19)	intron (NM_001303104, intron 9 of 19)	69585	NM_001303104	7088		NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1|TLE-1	TLE family member 1, transcriptional corepressor	protein-coding
51883	chr12	53503751	53503850	+	0	NA	exon (NM_004178, exon 4 of 9)	exon (NM_004178, exon 4 of 9)	2214	NM_134324	6895		NM_004178	ENSG00000139546	TARBP2	LOQS|TRBP|TRBP1|TRBP2	TARBP2 subunit of RISC loading complex	protein-coding
34653	chr10	133331901	133332480	+	0	NA	intron (NM_015722, intron 1 of 5)	L1M5|LINE|L1	4706	NM_015722	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
10844	chr1	77957251	77957350	+	0	NA	intron (NR_146539, intron 16 of 22)	intron (NR_146539, intron 16 of 22)	21772	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
179936	chr5	767701	767900	+	0	NA	intron (NM_001351303, intron 2 of 13)	intron (NM_001351303, intron 2 of 13)	16929	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
70697	chr14	103160471	103160930	+	0	NA	Intergenic	(CAGCCTG)n|Simple_repeat|Simple_repeat	28328	NR_033938	100131366		NR_033938	ENSG00000251533	LINC00605	-	long intergenic non-protein coding RNA 605	ncRNA
36085	chr11	3006651	3007700	+	0	NA	intron (NR_165428, intron 18 of 22)	intron (NR_165428, intron 18 of 22)	-14846	NM_001369375	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
178226	chr4	142817421	142817680	+	0	NA	intron (NM_001385337, intron 1 of 20)	intron (NM_001385337, intron 1 of 20)	28751	NM_001385335	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
139264	chr2	219448221	219449150	+	0	NA	exon (NM_005876, exon 4 of 41)	exon (NM_005876, exon 4 of 41)	-12127	NM_001173476	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
80233	chr16	2192571	2193130	+	0	NA	intron (NM_020764, intron 1 of 19)	L2b|LINE|L2	3755	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
22418	chr1	220056221	220056950	+	0	NA	TTS (NM_006085)	TTS (NM_006085)	-10080	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
59937	chr13	31155571	31155730	+	0	NA	exon (NM_001286505, exon 3 of 16)	exon (NM_001286505, exon 3 of 16)	6254	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
24975	chr10	3063671	3064280	+	0	NA	intron (NR_160681, intron 1 of 3)	L2a|LINE|L2	2958	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
154119	chr22	31111701	31112030	+	0	NA	Intergenic	MIRb|SINE|MIR	-4297	NM_080430	140606		NM_080430	ENSG00000198832	SELENOM	SELM|SEPM	selenoprotein M	protein-coding
114199	chr19	11421571	11423130	+	0	NA	intron (NM_001302453, intron 10 of 12)	intron (NM_001302453, intron 10 of 12)	-3036	NM_001035223	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
236013	chrX	54826071	54826330	+	0	NA	Intergenic	Intergenic	11830	NR_002953	677799		NR_002953	ENSG00000221716	SNORA11	SNORA11A|U107	small nucleolar RNA, H/ACA box 11	snoRNA
157166	chr22	42933471	42933830	+	0	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	13391	NM_007229	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
37323	chr11	14809571	14809730	+	0	NA	intron (NM_001363569, intron 5 of 15)	MLT1A0|LTR|ERVL-MaLR	82021	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
209962	chr7	92685051	92685800	+	0	NA	intron (NM_001145306, intron 4 of 7)	intron (NM_001145306, intron 4 of 7)	-95035	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
103073	chr17	77286701	77287280	+	0	NA	promoter-TSS (NM_001113492)	promoter-TSS (NM_001113492)	-901	NM_001113492	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
37475	chr11	18366001	18366400	+	0	NA	3' UTR (NM_005316, exon 15 of 15)	3' UTR (NM_005316, exon 15 of 15)	-21587	NR_036116	100423016		NR_036116	ENSG00000264603	MIR3159	-	microRNA 3159	ncRNA
233520	chrM	14801	15900	+	0	NA	Intergenic	Intergenic	-7836	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
228320	chr9	98252721	98253630	+	0	NA	intron (NM_018421, intron 1 of 12)	L2b|LINE|L2	2474	NR_051978	55357		NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
50410	chr12	47362371	47362880	+	0	NA	Intergenic	Intergenic	1644	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
116507	chr19	18151051	18151230	+	0	NA	3' UTR (NM_015016, exon 27 of 27)	3' UTR (NM_015016, exon 27 of 27)	-2023	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
140069	chr2	231434421	231434680	+	0	NA	Intergenic	AluSx1|SINE|Alu	21386	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
185297	chr5	126600621	126601750	+	0	NA	intron (NM_032177, intron 1 of 4)	CpG	238	NM_032177	51808		NM_032177	ENSG00000164902	PHAX	RNUXA	phosphorylated adaptor for RNA export	protein-coding
76316	chr15	74384921	74385630	+	0	NA	intron (NR_146881, intron 2 of 3)	intron (NR_146881, intron 2 of 3)	6193	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
197358	chr6	73458001	73458400	+	0	NA	Intergenic	Intergenic	-3537	NM_133645	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
177521	chr4	118557351	118557450	+	0	NA	Intergenic	Intergenic	-34344	NR_109983	729218		NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
51721	chr12	53211671	53212200	+	0	NA	intron (NM_001042728, intron 7 of 7)	intron (NM_001042728, intron 7 of 7)	-4684	NM_000889	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
129528	chr2	69695601	69695880	+	0	NA	intron (NM_001320698, intron 2 of 14)	Tigger1|DNA|TcMar-Tigger	-46394	NM_001320702	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
55729	chr12	108308021	108308280	+	0	NA	intron (NM_001142344, intron 1 of 2)	MIRb|SINE|MIR	12512	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
59455	chr13	25973451	25974480	+	0	NA	intron (NM_016529, intron 35 of 36)	intron (NM_016529, intron 35 of 36)	78051	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
214949	chr7	151787871	151788430	+	0	NA	intron (NM_016203, intron 1 of 15)	L1MB3|LINE|L1	-18188	NM_001354885	644090		NM_001354885	ENSG00000242048	PRKAG2-AS2	-	PRKAG2 antisense RNA 2	ncRNA
160547	chr3	30675001	30675400	+	0	NA	intron (NM_001024847, intron 6 of 7)	intron (NM_001024847, intron 6 of 7)	68599	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
126062	chr2	25675351	25676380	+	0	NA	Intergenic	L2|LINE|L2	-2191	NM_001256304	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
130790	chr2	86856271	86856730	+	0	NA	intron (NM_172213, intron 2 of 5)	intron (NM_172213, intron 2 of 5)	-5325	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
219681	chr8	80533721	80534000	+	0	NA	Intergenic	MER117|DNA|hAT-Charlie	47634	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
198993	chr6	110913571	110914130	+	0	NA	Intergenic	Intergenic	39066	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
162829	chr3	49172421	49173300	+	0	NA	exon (NM_173546, exon 2 of 6)	exon (NM_173546, exon 2 of 6)	1262	NM_173546	200942		NM_173546	ENSG00000185909	KLHDC8B	CHL	kelch domain containing 8B	protein-coding
156401	chr22	41153301	41153700	+	0	NA	intron (NM_001362843, intron 15 of 29)	AluSz|SINE|Alu	44001	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
20075	chr1	186301601	186301800	+	0	NA	exon (NM_001127709, exon 4 of 11)	exon (NM_001127709, exon 4 of 11)	5421	NM_005807	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
130461	chr2	85538321	85540800	+	0	NA	promoter-TSS (NR_038942)	promoter-TSS (NR_038942)	392	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
146400	chr20	49317471	49317630	+	0	NA	Intergenic	AluSq2|SINE|Alu	36867	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
191292	chr6	6609801	6611000	+	0	NA	intron (NM_004271, intron 1 of 4)	intron (NM_004271, intron 1 of 4)	12426	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
85248	chr16	48383621	48383880	+	0	NA	intron (NM_003031, intron 1 of 1)	intron (NM_003031, intron 1 of 1)	1663	NM_003031	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
136289	chr2	174749921	174750180	+	0	NA	exon (NM_000079, exon 7 of 9)	exon (NM_000079, exon 7 of 9)	14422	NM_001039523	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
18867	chr1	167935301	167937590	+	0	NA	promoter-TSS (NM_001349773)	promoter-TSS (NM_001349773)	-114	NR_146229	55827		NM_018442	ENSG00000143164	DCAF6	1200006M05Rik|ARCAP|IQWD1|MSTP055|NRIP|PC326	DDB1 and CUL4 associated factor 6	protein-coding
26421	chr10	17216121	17217030	+	0	NA	intron (NR_108061, intron 1 of 2)	intron (NR_108061, intron 1 of 2)	10323	NR_108060	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
206287	chr7	30024471	30024630	+	0	NA	intron (NR_046478, intron 1 of 4)	AluSg|SINE|Alu	2152	NM_017946	55033		NM_017946	ENSG00000106080	FKBP14	EDSKMH|EDSKSCL2|FKBP22|IPBP12	FKBP prolyl isomerase 14	protein-coding
238406	chrX	150566851	150567580	+	0	NA	Intergenic	Intergenic	-1406	NM_001376906	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
205731	chr7	23491701	23492250	+	0	NA	TTS (NR_026676)	TTS (NR_026676)	1587	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
49413	chr12	22630251	22630780	+	0	NA	intron (NM_001039481, intron 1 of 2)	L2c|LINE|L2	5344	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
229984	chr9	126810701	126810900	+	0	NA	intron (NM_014007, intron 2 of 2)	AluSc|SINE|Alu	5760	NM_014007	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
239067	chrY	7299971	7300680	+	0	NA	intron (NR_028062, intron 1 of 7)	intron (NR_028062, intron 1 of 7)	26353	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
109069	chr18	79912521	79913200	+	0	NA	intron (NM_001146343, intron 3 of 3)	intron (NM_001146343, intron 3 of 3)	38793	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
165427	chr3	98518351	98518730	+	0	NA	intron (NM_001040199, intron 3 of 4)	L3|LINE|CR1	4362	NM_001040181	56650		NM_019895	ENSG00000080822	CLDND1	C3orf4|GENX-3745|Z38	claudin domain containing 1	protein-coding
191127	chr6	4059801	4060400	+	0	NA	intron (NR_146785, intron 14 of 20)	Tigger3a|DNA|TcMar-Tigger	19037	NM_173563	222826		NM_173563	ENSG00000145975	FAM217A	C6orf146	family with sequence similarity 217 member A	protein-coding
105052	chr17	82072951	82073050	+	0	NA	Intergenic	Intergenic	-7196	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
173394	chr4	7971851	7972600	+	0	NA	intron (NM_001286688, intron 14 of 14)	intron (NM_001286688, intron 14 of 14)	-32299	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
94451	chr17	29250121	29250830	+	0	NA	intron (NM_005208, intron 3 of 5)	intron (NM_005208, intron 3 of 5)	3616	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
121220	chr19	46623771	46623930	+	0	NA	exon (NM_000960, exon 2 of 3)	exon (NM_000960, exon 2 of 3)	1239	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
115260	chr19	14536751	14537530	+	0	NA	intron (NM_138501, intron 1 of 12)	intron (NM_138501, intron 1 of 12)	7546	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
5180	chr1	24942471	24943400	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-12659	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
25784	chr10	11162171	11163900	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-1846	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
104208	chr17	80497101	80497300	+	0	NA	Intergenic	Intergenic	-20593	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
17461	chr1	156704601	156705000	+	0	NA	intron (NM_001878, intron 1 of 3)	intron (NM_001878, intron 1 of 3)	783	NM_001878	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
160825	chr3	33054301	33054530	+	0	NA	intron (NM_001135602, intron 3 of 12)	intron (NM_001135602, intron 3 of 12)	42417	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
84797	chr16	31061421	31061680	+	0	NA	exon (NM_024706, exon 3 of 3)	exon (NM_024706, exon 3 of 3)	3538	NM_001172669	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
109363	chr19	632671	634480	+	0	NA	promoter-TSS (NM_005035)	promoter-TSS (NM_005035)	-38	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
11912	chr1	93352851	93352950	+	0	NA	intron (NM_001938, intron 1 of 2)	AluJr|SINE|Alu	6993	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
59306	chr13	24277251	24277580	+	0	NA	intron (NM_001286795, intron 1 of 9)	AluY|SINE|Alu	6665	NM_001286793	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
197671	chr6	85464901	85465130	+	0	NA	intron (NM_002526, intron 1 of 8)	L2|LINE|L2	14932	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
77612	chr15	85367621	85368050	+	0	NA	Intergenic	AluJb|SINE|Alu	-12761	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
33078	chr10	110892421	110892980	+	0	NA	intron (NM_145341, intron 9 of 12)	Tigger3c|DNA|TcMar-Tigger	-5390	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
17800	chr1	159804921	159805380	+	0	NA	intron (NM_001284217, intron 2 of 10)	intron (NM_001284217, intron 2 of 10)	2790	NM_001004310	343413		NM_001004310	ENSG00000181036	FCRL6	FcRH6	Fc receptor like 6	protein-coding
174725	chr4	42671101	42672600	+	0	NA	Intergenic	Intergenic	-14745	NM_001105529	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
34334	chr10	132176071	132176230	+	0	NA	intron (NM_001105521, intron 24 of 24)	intron (NM_001105521, intron 24 of 24)	-10798	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
4331	chr1	20490671	20490830	+	0	NA	Intergenic	Intergenic	-4540	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
42401	chr11	69012321	69012780	+	0	NA	intron (NR_120541, intron 1 of 5)	intron (NR_120541, intron 1 of 5)	196	NR_120541	101928200		NR_120541	ENSG00000256508	MRGPRF-AS1	-	MRGPRF antisense RNA 1	ncRNA
42895	chr11	73368551	73368650	+	0	NA	3' UTR (NM_014786, exon 21 of 21)	3' UTR (NM_014786, exon 21 of 21)	-7799	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
214588	chr7	150635271	150635500	+	0	NA	Intergenic	L1PA7|LINE|L1	-2737	NM_001244072	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
64875	chr14	35333771	35334950	+	0	NA	Intergenic	Intergenic	41978	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
116886	chr19	18683021	18684850	+	0	NA	intron (NM_015321, intron 1 of 13)	G-rich|Low_complexity|Low_complexity	255	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
205959	chr7	26155881	26157450	+	0	NA	intron (NM_004289, intron 1 of 3)	intron (NM_004289, intron 1 of 3)	4467	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
135957	chr2	172083801	172084000	+	0	NA	Intergenic	Intergenic	-1607	NM_001038493	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
231891	chr9	133048471	133048950	+	0	NA	intron (NM_012087, intron 3 of 10)	intron (NM_012087, intron 3 of 10)	-3286	NR_106937	102465528		NR_106937	ENSG00000273932	MIR6877	hsa-mir-6877	microRNA 6877	ncRNA
124621	chr2	1221901	1222350	+	0	NA	intron (NM_018968, intron 9 of 16)	HERV17-int|LTR|ERV1	-191336	NM_000547	7173		NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
67566	chr14	71395071	71395480	+	0	NA	intron (NM_001354287, intron 2 of 23)	intron (NM_001354287, intron 2 of 23)	-3062	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
63764	chr14	21248771	21248930	+	0	NA	intron (NM_001077443, intron 1 of 7)	L1M5|LINE|L1	20592	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
190972	chr6	2968601	2968800	+	0	NA	intron (NM_001297700, intron 1 of 6)	intron (NM_001297700, intron 1 of 6)	2023	NM_001374516	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
188365	chr5	151774971	151775580	+	0	NA	intron (NM_198395, intron 1 of 11)	intron (NM_198395, intron 1 of 11)	-3099	NR_132345	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
185122	chr5	119287171	119288180	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	18916	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
9821	chr1	53943671	53944180	+	0	NA	intron (NM_001382249, intron 1 of 4)	intron (NM_001382249, intron 1 of 4)	1774	NR_167994	51668		NM_016126	ENSG00000081870	IFT25	C1orf41|CFAP232|FAP232|HSPB11|HSPCO34|PP25	intraflagellar transport 25	protein-coding
117118	chr19	19209471	19209630	+	0	NA	Intergenic	Intergenic	-2408	NM_004386	1463		NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
157198	chr22	43127501	43128600	+	0	NA	intron (NM_001197, intron 3 of 4)	intron (NM_001197, intron 3 of 4)	15347	NM_014507	27349		NM_014507	ENSG00000100294	MCAT	FASN2C|MCT|MCT1|MT|NET62|OPA15|fabD	malonyl-CoA-acyl carrier protein transacylase	protein-coding
42860	chr11	73264601	73265130	+	0	NA	promoter-TSS (NM_001277206)	promoter-TSS (NM_001277206)	313	NM_001277207	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
183882	chr5	87285521	87285980	+	0	NA	intron (NM_022650, intron 1 of 24)	AluSx|SINE|Alu	16813	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
140363	chr2	232761371	232761600	+	0	NA	intron (NM_001103146, intron 8 of 28)	intron (NM_001103146, intron 8 of 28)	15080	NM_001172417	3769		NM_002242	ENSG00000115474	KCNJ13	KIR1.4|KIR7.1|LCA16|SVD	potassium inwardly rectifying channel subfamily J member 13	protein-coding
53486	chr12	66234121	66234450	+	0	NA	intron (NM_001142523, intron 7 of 10)	intron (NM_001142523, intron 7 of 10)	-16797	NR_106757	102465249		NR_106757	ENSG00000284011	MIR6502	hsa-mir-6502	microRNA 6502	ncRNA
168120	chr3	138831051	138831580	+	0	NA	intron (NM_006219, intron 1 of 23)	AluSq2|SINE|Alu	3613	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
44585	chr11	108261021	108261280	+	0	NA	intron (NM_000051, intron 16 of 62)	L1PA2|LINE|L1	37621	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
213241	chr7	133990821	133991080	+	0	NA	intron (NM_021807, intron 14 of 17)	L1MA4|LINE|L1	-136390	NM_001365700	136332		NM_144648	ENSG00000155530	LRGUK	CFAP246	leucine rich repeats and guanylate kinase domain containing	protein-coding
135607	chr2	168118751	168119080	+	0	NA	intron (NM_013233, intron 10 of 17)	intron (NM_013233, intron 10 of 17)	128680	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
233377	chr9	137514771	137514930	+	0	NA	intron (NM_001098537, intron 12 of 34)	intron (NM_001098537, intron 12 of 34)	35552	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
228577	chr9	104505911	104506130	+	0	NA	TTS (NM_001004485)	TTS (NM_001004485)	1757	NM_001004485	138805		NM_001004485	ENSG00000186881	OR13F1	OR9-6	olfactory receptor family 13 subfamily F member 1	protein-coding
103379	chr17	78138821	78139500	+	0	NA	intron (NM_152468, intron 14 of 15)	intron (NM_152468, intron 14 of 15)	-6733	NM_007267	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
205609	chr7	22122001	22122200	+	0	NA	3' UTR (NM_012294, exon 26 of 26)	3' UTR (NM_012294, exon 26 of 26)	71645	NM_001367601	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
114924	chr19	13961571	13961730	+	0	NA	TTS (NM_138353)	TTS (NM_138353)	-8258	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
16438	chr1	154572771	154573080	+	0	NA	intron (NM_000748, intron 5 of 5)	intron (NM_000748, intron 5 of 5)	5147	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
236319	chrX	68830001	68830780	+	0	NA	intron (NM_004429, intron 1 of 4)	CpG	1369	NM_004429	1947		NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
106317	chr18	12902771	12902930	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-18515	NM_080422	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
142065	chr20	2108951	2109650	+	0	NA	intron (NM_080836, intron 2 of 3)	intron (NM_080836, intron 2 of 3)	7473	NM_080836	140901		NM_080836	ENSG00000125834	STK35	CLIK1|STK35L1	serine/threonine kinase 35	protein-coding
26509	chr10	18661621	18662230	+	0	NA	intron (NM_178815, intron 1 of 5)	L2c|LINE|L2	2494	NM_178815	221079		NM_178815	ENSG00000165997	ARL5B	ARL8	ADP ribosylation factor like GTPase 5B	protein-coding
215183	chr7	155722101	155722300	+	0	NA	intron (NM_053043, intron 9 of 17)	intron (NM_053043, intron 9 of 17)	77539	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
88302	chr16	84118471	84118830	+	0	NA	Intergenic	Intergenic	-1708	NM_003791	8720		NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SEDKF|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
231397	chr9	130866421	130866700	+	0	NA	intron (NM_007313, intron 4 of 10)	intron (NM_007313, intron 4 of 10)	30252	NM_198180	347148		NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
101399	chr17	67375721	67375980	+	0	NA	Intergenic	Intergenic	-1431	NM_012417	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
95543	chr17	36629221	36629700	+	0	NA	Intergenic	Intergenic	27877	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
130338	chr2	84995121	84995380	+	0	NA	intron (NM_020122, intron 1 of 6)	AluSg|SINE|Alu	24089	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
218108	chr8	41466351	41467050	+	0	NA	Intergenic	Intergenic	-23696	NM_001362979	51125		NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
176251	chr4	86945371	86945530	+	0	NA	intron (NM_001166693, intron 1 of 20)	AluJb|SINE|Alu	10448	NM_001166693	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
62950	chr13	112066421	112067430	+	0	NA	promoter-TSS (NM_005986)	promoter-TSS (NM_005986)	-224	NM_005986	6656		NM_005986	ENSG00000182968	SOX1	-	SRY-box transcription factor 1	protein-coding
153550	chr22	26595621	26596130	+	0	NA	Intergenic	AluJo|SINE|Alu	-5743	NM_001362922	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
51130	chr12	50109151	50109730	+	0	NA	exon (NM_001257199, exon 8 of 8)	exon (NM_001257199, exon 8 of 8)	-2796	NM_001257133	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
88971	chr16	87862951	87863780	+	0	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	6142	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
167448	chr3	129088001	129089230	+	0	NA	3' UTR (NM_001204883, exon 4 of 4)	3' UTR (NM_001204883, exon 4 of 4)	27836	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
227021	chr9	83912221	83912500	+	0	NA	intron (NM_001271928, intron 2 of 15)	intron (NM_001271928, intron 2 of 15)	9072	NM_001354070	55582		NM_017576	ENSG00000165115	KIF27	-	kinesin family member 27	protein-coding
182166	chr5	56616521	56616780	+	0	NA	Intergenic	Intergenic	-10394	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
1713	chr1	5481801	5482400	+	0	NA	Intergenic	Intergenic	380641	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
233871	chrX	1554371	1555750	+	0	NA	Intergenic	Intergenic	-17875	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
11657	chr1	91807621	91807880	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	78401	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
106811	chr18	23973871	23974100	+	0	NA	Intergenic	L1PA10|LINE|L1	-18902	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
214976	chr7	152066051	152066150	+	0	NA	intron (NM_001371468, intron 2 of 12)	L1PA5|LINE|L1	-8937	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
143551	chr20	31593371	31593750	+	0	NA	Intergenic	Intergenic	-11729	NM_002165	3397		NM_002165	ENSG00000125968	ID1	ID|bHLHb24	inhibitor of DNA binding 1	protein-coding
181709	chr5	50663751	50664080	+	0	NA	Intergenic	Intergenic	-2016	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
20493	chr1	198646701	198647400	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	8010	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
49849	chr12	32895721	32895980	+	0	NA	intron (NM_004572, intron 1 of 13)	intron (NM_004572, intron 1 of 13)	927	NM_004572	5318		NM_004572	ENSG00000057294	PKP2	ARVD9	plakophilin 2	protein-coding
204838	chr7	5768221	5768680	+	0	NA	intron (NM_001377156, intron 1 of 17)	L1MEg|LINE|L1	13213	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
89350	chr16	88763021	88763350	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	20418	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
56242	chr12	111950801	111951400	+	0	NA	intron (NM_138341, intron 3 of 9)	L1PA13|LINE|L1	62065	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
195253	chr6	36386051	36386650	+	0	NA	intron (NM_001207038, intron 1 of 6)	AluSx1|SINE|Alu	1319	NM_001207038	51513		NM_016135	ENSG00000010030	ETV7	TEL-2|TEL2|TELB	ETS variant transcription factor 7	protein-coding
168674	chr3	150576951	150577250	+	0	NA	intron (NM_001319043, intron 10 of 12)	MLT1A0|LTR|ERVL-MaLR	-26221	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
120629	chr19	45062871	45063030	+	0	NA	intron (NM_001278439, intron 10 of 19)	intron (NM_001278439, intron 10 of 19)	-12677	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
213823	chr7	141550801	141551800	+	0	NA	promoter-TSS (NM_001364948).2	promoter-TSS (NM_001364948).2	-110	NM_018238	55750		NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
106536	chr18	21585351	21585650	+	0	NA	intron (NM_052911, intron 1 of 11)	L1M4|LINE|L1	15204	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
77957	chr15	89365301	89365500	+	0	NA	intron (NR_133002, intron 1 of 5)	intron (NR_133002, intron 1 of 5)	-2617	NR_029692	407051		NR_029692	ENSG00000284329	MIR9-3	MIRN9-3|hsa-mir-9-3|miRNA9-3|mir-9-3	microRNA 9-3	ncRNA
90538	chr17	1489871	1490100	+	0	NA	intron (NM_001080779, intron 1 of 31)	AluSz|SINE|Alu	1694	NM_033375	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
3318	chr1	15413021	15413350	+	0	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	3297	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
223481	chr8	144055801	144056200	+	0	NA	intron (NM_017570, intron 15 of 26)	intron (NM_017570, intron 15 of 26)	1380	NR_106905	102465509		NR_106905	ENSG00000277888	MIR6846	hsa-mir-6846	microRNA 6846	ncRNA
77435	chr15	84187621	84187980	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-4048	NR_033738	440300		NR_033738		LOC440300	-	chondroitin sulfate proteoglycan 4 pseudogene	pseudo
32290	chr10	102130301	102130500	+	0	NA	Intergenic	AluY|SINE|Alu	-2594	NM_001288727	23082		NM_015062	ENSG00000148840	PPRC1	PRC	PPARG related coactivator 1	protein-coding
27701	chr10	33144651	33145350	+	0	NA	Intergenic	Intergenic	-28193	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
88748	chr16	86519821	86520450	+	0	NA	Intergenic	Intergenic	9608	NM_001451	2294		NM_001451	ENSG00000103241	FOXF1	ACDMPV|FKHL5|FREAC1	forkhead box F1	protein-coding
177345	chr4	110059671	110060650	+	0	NA	intron (NM_024090, intron 2 of 3)	intron (NM_024090, intron 2 of 3)	138455	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
146622	chr20	50173171	50173580	+	0	NA	intron (NR_109943, intron 2 of 2)	AluJo|SINE|Alu	805	NR_109943	101927541		NR_109943	ENSG00000231742	LINC01273	-	long intergenic non-protein coding RNA 1273	ncRNA
135365	chr2	160421351	160422500	+	0	NA	intron (NM_016836, intron 1 of 13)	L1PA5|LINE|L1	-14043	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
138122	chr2	202291371	202292500	+	0	NA	TTS (NR_003694)	TTS (NR_003694)	618	NR_003694	100113392		NR_003694	ENSG00000271852	SNORD11B	-	small nucleolar RNA, C/D box 11B	snoRNA
184017	chr5	91281671	91282350	+	0	NA	Intergenic	Intergenic	32392	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
188957	chr5	160508271	160509120	+	0	NA	Intergenic	Intergenic	23343	NR_029701	406938		NR_029701	ENSG00000283733	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
177870	chr4	128589971	128590330	+	0	NA	Intergenic	MIR|SINE|MIR	162134	NR_125882	100507487		NR_125882	ENSG00000251432	LINC02615	-	long intergenic non-protein coding RNA 2615	ncRNA
80315	chr16	2339321	2341240	+	0	NA	promoter-TSS (NR_003574)	promoter-TSS (NR_003574)	448	NM_001089	21		NM_001089	ENSG00000167972	ABCA3	ABC-C|ABC3|EST111653|LBM180|SMDP3	ATP binding cassette subfamily A member 3	protein-coding
169856	chr3	177194571	177194730	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	1828	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
37093	chr11	13228671	13228830	+	0	NA	Intergenic	MIRb|SINE|MIR	-47902	NM_001351804	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
155242	chr22	37940651	37940950	+	0	NA	exon (NM_033386, exon 16 of 16)	exon (NM_033386, exon 16 of 16)	12801	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
168773	chr3	151282971	151283640	+	0	NA	intron (NM_053002, intron 14 of 42)	intron (NM_053002, intron 14 of 42)	-4763	NM_014879	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
94110	chr17	27892721	27893800	+	0	NA	intron (NM_001076680, intron 1 of 3)	CpG	105	NM_001076680	201229		NM_001076680	ENSG00000232859	LYRM9	C17orf108|HSD24	LYR motif containing 9	protein-coding
52627	chr12	56269601	56270200	+	0	NA	intron (NM_144576, intron 4 of 4)	AluSx1|SINE|Alu	2574	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
1686	chr1	4343451	4343630	+	0	NA	Intergenic	Intergenic	-68511	NR_027088	284661		NR_027088	ENSG00000235054	LINC01777	-	long intergenic non-protein coding RNA 1777	ncRNA
209134	chr7	75090651	75091000	+	0	NA	Intergenic	AluJr|SINE|Alu	-1731	NM_001368301	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
118439	chr19	35850851	35851730	+	0	NA	exon (NM_004646, exon 3 of 29)	exon (NM_004646, exon 3 of 29)	1214	NM_004646	4868		NM_004646	ENSG00000161270	NPHS1	CNF|NPHN|nephrin	NPHS1 adhesion molecule, nephrin	protein-coding
6792	chr1	30783821	30784080	+	0	NA	Intergenic	Intergenic	-26176	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
32265	chr10	102057701	102058130	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1742	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
90769	chr17	2062601	2062800	+	0	NA	3' UTR (NM_006497, exon 2 of 2)	3' UTR (NM_006497, exon 2 of 2)	6390	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
171374	chr3	196098901	196099630	+	0	NA	Intergenic	Intergenic	-17175	NM_001313966	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
188607	chr5	157192001	157192580	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	11450	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
58229	chr12	128572251	128572550	+	0	NA	intron (NM_001136103, intron 3 of 8)	MLT1K|LTR|ERVL-MaLR	251558	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
137416	chr2	196276871	196277340	+	0	NA	intron (NM_001348768, intron 15 of 28)	intron (NM_001348768, intron 15 of 28)	17081	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
148815	chr21	8341521	8341600	+	0	NA	intron (NR_003287, intron 2 of 2)	AluJr4|SINE|Alu	-39105	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
103346	chr17	78084751	78085750	+	0	NA	intron (NM_001142640, intron 12 of 21)	intron (NM_001142640, intron 12 of 21)	43505	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
134469	chr2	143246001	143246500	+	0	NA	intron (NM_018460, intron 5 of 13)	MIRb|SINE|MIR	116831	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
204467	chr7	4712301	4712650	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	30180	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
2782	chr1	10866071	10867830	+	0	NA	Intergenic	CpG	-70304	NM_017766	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
172721	chr4	2807901	2808100	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	-4291	NM_001145855	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
53295	chr12	64454151	64455280	+	0	NA	intron (NM_013254, intron 1 of 20)	AluY|SINE|Alu	2595	NM_013254	29110		NM_013254	ENSG00000183735	TBK1	FTDALS4|IIAE8|NAK|T2K	TANK binding kinase 1	protein-coding
193272	chr6	29972301	29972730	+	0	NA	Intergenic	Intergenic	-2600	NR_028032	10255		NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9	ncRNA
220644	chr8	101058721	101059180	+	0	NA	intron (NR_033962, intron 2 of 2)	intron (NR_033962, intron 2 of 2)	6896	NR_033962	441374		NR_033962	ENSG00000248599	SLEAR	-	STAT1 regulated ILF2 complex interacting lncRNA	ncRNA
42529	chr11	71388051	71389280	+	0	NA	Intergenic	Intergenic	34689	NR_038862	399923		NM_001001680	ENSG00000293435	ACTE1P	-	actin epsilon 1, pseudogene	ncRNA
74	chr1	289551	289650	+	0	NA	Intergenic	Intergenic	-83003	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
178077	chr4	140116551	140116850	+	0	NA	intron (NM_018717, intron 1 of 4)	AmnSINE1|SINE|5S-Deu-L2	-11315	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
184384	chr5	98851951	98852250	+	0	NA	Intergenic	AluSz|SINE|Alu	-76462	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
212697	chr7	129772721	129772980	+	0	NA	Intergenic	Intergenic	1919	NR_029512	407053		NR_029512	ENSG00000199158	MIR96	DFNA50|MIRN96|hsa-mir-96|miR-96|miRNA96	microRNA 96	ncRNA
28284	chr10	46029471	46029630	+	0	NA	intron (NM_001145261, intron 1 of 10)	intron (NM_001145261, intron 1 of 10)	1164	NM_001145263	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
125915	chr2	24969171	24969930	+	0	NA	intron (NM_001198559, intron 1 of 5)	AluSx3|SINE|Alu	2405	NM_016544	51277		NM_016544	ENSG00000115137	DNAJC27	RBJ|RabJS	DnaJ heat shock protein family (Hsp40) member C27	protein-coding
128453	chr2	55615001	55615900	+	0	NA	intron (NM_020463, intron 2 of 14)	intron (NM_020463, intron 2 of 14)	2172	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
141885	chr20	775101	775300	+	0	NA	intron (NM_001370085, intron 1 of 5)	intron (NM_001370085, intron 1 of 5)	785	NM_001370085	113278		NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
196914	chr6	52377601	52378070	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	15684	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
109110	chr18	80033071	80035250	+	0	NA	promoter-TSS (NM_024805)	promoter-TSS (NM_024805)	-224	NM_001305564	10907		NM_006701	ENSG00000141759	TXNL4A	BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD	thioredoxin like 4A	protein-coding
138297	chr2	203719621	203720560	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	13451	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
47718	chr12	6456751	6456850	+	0	NA	intron (NR_147127, intron 3 of 8)	AluSq2|SINE|Alu	4758	NR_147127	55080		NM_018009	ENSG00000139192	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein like	protein-coding
52974	chr12	57477101	57478870	+	0	NA	promoter-TSS (NM_001319852)	promoter-TSS (NM_001319852)	-118	NM_001367426	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
181631	chr5	49409851	49409950	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1031388	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
208299	chr7	66077171	66077400	+	0	NA	intron (NM_001024943, intron 1 of 15)	AluJo|SINE|Alu	1466	NM_001024946	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
53260	chr12	62934071	62934230	+	0	NA	intron (NM_020700, intron 1 of 9)	intron (NM_020700, intron 1 of 9)	1000	NM_020700	57460		NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent 1H	protein-coding
180813	chr5	32428901	32429100	+	0	NA	intron (NR_144318, intron 2 of 18)	AluYm1|SINE|Alu	15740	NM_016107	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
209616	chr7	77698351	77698600	+	0	NA	intron (NM_198467, intron 1 of 7)	intron (NM_198467, intron 1 of 7)	-1130	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
210941	chr7	101254271	101254430	+	0	NA	Intergenic	AluJb|SINE|Alu	-9269	NM_016068	51024		NM_016068	ENSG00000214253	FIS1	CGI-135|TTC11	fission, mitochondrial 1	protein-coding
174892	chr4	48906051	48907150	+	0	NA	intron (NM_001286773, intron 1 of 5)	CpG	174	NM_001014446	132299		NM_152398	ENSG00000145247	OCIAD2	-	OCIA domain containing 2	protein-coding
220743	chr8	102237021	102237280	+	0	NA	intron (NM_015713, intron 1 of 8)	intron (NM_015713, intron 1 of 8)	1681	NM_001172477	50484		NM_015713	ENSG00000048392	RRM2B	MTDPS8A|MTDPS8B|P53R2|RCDFRD	ribonucleotide reductase regulatory TP53 inducible subunit M2B	protein-coding
126178	chr2	26577521	26578130	+	0	NA	intron (NM_001322426, intron 4 of 4)	intron (NM_001322426, intron 4 of 4)	15238	NM_001322426	339778		NM_001105519	ENSG00000173557	CIMIP2C	C2orf70|FAM166C	ciliary microtubule inner protein 2C	protein-coding
74374	chr15	58770401	58772650	+	0	NA	promoter-TSS (NR_135474)	promoter-TSS (NR_135474)	223	NM_001040450	54629		NM_019092	ENSG00000128923	MINDY2	FAM63B	MINDY lysine 48 deubiquitinase 2	protein-coding
147235	chr20	57409521	57409780	+	0	NA	TTS (NM_017495)	TTS (NM_017495)	-16594	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
151509	chr21	46412951	46413250	+	0	NA	intron (NM_006031, intron 29 of 46)	CpG	-45791	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
139786	chr2	230231101	230232180	+	0	NA	intron (NM_001278451, intron 1 of 25)	L1MCb|LINE|L1	5904	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
110191	chr19	1677101	1677300	+	0	NA	Intergenic	Intergenic	-24585	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
150111	chr21	37457171	37457480	+	0	NA	intron (NM_101395, intron 3 of 12)	AluSz6|SINE|Alu	37026	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
217642	chr8	30069321	30070330	+	0	NA	exon (NM_001284239, exon 2 of 5)	exon (NM_001284239, exon 2 of 5)	13239	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
73038	chr15	40857171	40858100	+	0	NA	3' UTR (NM_003710, exon 11 of 11)	3' UTR (NM_003710, exon 11 of 11)	-13111	NR_146466	102724362		NR_146466	ENSG00000261183	SPINT1-AS1	-	SPINT1 antisense RNA 1	ncRNA
33103	chr10	110929351	110929680	+	0	NA	intron (NR_136749, intron 1 of 7)	MLT1A|LTR|ERVL-MaLR	7740	NR_026715	644511		NR_026715	ENSG00000234118	RPL13AP6	RPL13A_7_1096|bA348N5.5	ribosomal protein L13a pseudogene 6	pseudo
182198	chr5	56825501	56825900	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	10151	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
96217	chr17	39773151	39773930	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	4685	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
50151	chr12	45762501	45762850	+	0	NA	intron (NM_152641, intron 3 of 20)	intron (NM_152641, intron 3 of 20)	32966	NM_001347839	196528		NM_152641	ENSG00000189079	ARID2	BAF200|CSS6|SMARCF3|ZIPZAP|p200	AT-rich interaction domain 2	protein-coding
238094	chrX	136577351	136578030	+	0	NA	Intergenic	Intergenic	26812	NR_030631	100126324		NR_030631	ENSG00000216060	MIR934	MIRN934|hsa-mir-934|mir-934	microRNA 934	ncRNA
144061	chr20	33672321	33673000	+	0	NA	intron (NM_031232, intron 1 of 11)	intron (NM_031232, intron 1 of 11)	1768	NM_031231	63941		NM_031231	ENSG00000125967	NECAB3	APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5	N-terminal EF-hand calcium binding protein 3	protein-coding
79962	chr16	1775801	1776000	+	0	NA	TTS (NM_001324081)	TTS (NM_001324081)	2672	NM_001257370	197342		NM_001010865	ENSG00000197774	EME2	SLX2B|gs125	essential meiotic structure-specific endonuclease subunit 2	protein-coding
101093	chr17	64967251	64967680	+	0	NA	non-coding (NR_026903, exon 5 of 5)	non-coding (NR_026903, exon 5 of 5)	8120	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
60422	chr13	40983871	40984400	+	0	NA	intron (NM_001370329, intron 1 of 9)	L2a|LINE|L2	-1236	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
12271	chr1	100472051	100472350	+	0	NA	intron (NM_001319210, intron 10 of 16)	L1M5|LINE|L1	-65939	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
160792	chr3	32961301	32961830	+	0	NA	Intergenic	L1M7|LINE|L1	9921	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
184230	chr5	96595351	96595850	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-66437	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
9571	chr1	51773251	51773500	+	0	NA	intron (NM_024586, intron 14 of 23)	MIRb|SINE|MIR	43525	NM_001350210	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
154060	chr22	30606651	30607280	+	0	NA	promoter-TSS (NM_001282327)	promoter-TSS (NM_001282327)	48	NM_001282328	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
22850	chr1	225464271	225464430	+	0	NA	Intergenic	AluSq2|SINE|Alu	-35495	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
23330	chr1	228100901	228101100	+	0	NA	non-coding (NR_130975, exon 9 of 9)	non-coding (NR_130975, exon 9 of 9)	2325	NR_130975	79169		NM_024319	ENSG00000143793	C1orf35	MMTAG2	chromosome 1 open reading frame 35	protein-coding
13567	chr1	115981171	115981580	+	0	NA	intron (NM_018420, intron 1 of 11)	intron (NM_018420, intron 1 of 11)	-4099	NR_125970	101928977		NR_125970		LOC101928977	-	uncharacterized LOC101928977	ncRNA
140110	chr2	231482101	231483300	+	0	NA	Intergenic	Intergenic	-18216	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
183750	chr5	81425521	81425880	+	0	NA	intron (NM_001345886, intron 15 of 15)	intron (NM_001345886, intron 15 of 15)	-31566	NM_130767	134526		NM_130767	ENSG00000172497	ACOT12	CACH-1|Cach|STARD15|THEAL	acyl-CoA thioesterase 12	protein-coding
81959	chr16	11855521	11856180	+	0	NA	Intergenic	Intergenic	-4308	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
85951	chr16	57244571	57245780	+	0	NA	promoter-TSS (NM_012106)	promoter-TSS (NM_012106)	-84	NM_012106	23568		NM_012106	ENSG00000102931	ARL2BP	BART|BART1|RP66	ADP ribosylation factor like GTPase 2 binding protein	protein-coding
50858	chr12	49136221	49136480	+	0	NA	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-4955	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
122625	chr19	49814771	49815130	+	0	NA	Intergenic	L1MC5a|LINE|L1	-1658	NM_001352262	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
127540	chr2	42335001	42335400	+	0	NA	TTS (NM_001319038)	TTS (NM_001319038)	24838	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
118294	chr19	35350701	35351500	+	0	NA	promoter-TSS (NM_005303)	promoter-TSS (NM_005303)	-442	NM_005303	2864		NM_005303	ENSG00000126266	FFAR1	FFA1R|GPCR40|GPR40	free fatty acid receptor 1	protein-coding
158214	chr22	50263751	50264350	+	0	NA	3' UTR (NM_002751, exon 12 of 12)	3' UTR (NM_002751, exon 12 of 12)	-2240	NM_001303252	6300		NM_002969	ENSG00000188130	MAPK12	ERK-6|ERK3|ERK6|MAPK 12|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
16076	chr1	153498901	153499100	+	0	NA	Intergenic	Intergenic	36991	NM_014624	6277		NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA|S10A6	S100 calcium binding protein A6	protein-coding
214872	chr7	151390151	151390450	+	0	NA	intron (NM_001284260, intron 3 of 5)	intron (NM_001284260, intron 3 of 5)	-18861	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
108410	chr18	69916621	69917100	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	31013	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
143476	chr20	31059501	31060650	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-197589	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
129153	chr2	66429151	66429250	+	0	NA	intron (NR_046438, intron 3 of 3)	intron (NR_046438, intron 3 of 3)	4270	NR_046438	730198		NR_046438		MEIS1-AS3	-	MEIS1 antisense RNA 3	ncRNA
54384	chr12	89863401	89864980	+	0	NA	Intergenic	Intergenic	-83503	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
144783	chr20	36632921	36633550	+	0	NA	intron (NM_175077, intron 4 of 7)	intron (NM_175077, intron 4 of 7)	12961	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
19058	chr1	169889501	169890050	+	0	NA	intron (NM_181093, intron 1 of 13)	L1MA10|LINE|L1	4121	NM_020423	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
232694	chr9	136534751	136536480	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	10433	NM_017617	4851		NM_017617	ENSG00000148400	NOTCH1	AOS5|AOVD1|TAN1|hN1	notch receptor 1	protein-coding
162938	chr3	49473671	49474030	+	0	NA	intron (NM_001177634, intron 2 of 5)	AluSx1|SINE|Alu	3583	NM_004393	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
101480	chr17	67502201	67502400	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-30715	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
203843	chr7	1448021	1448280	+	0	NA	intron (NM_182924, intron 3 of 16)	intron (NM_182924, intron 3 of 16)	11320	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
16283	chr1	154156301	154156750	+	0	NA	non-coding (NR_103461, exon 8 of 8)	non-coding (NR_103461, exon 8 of 8)	-1409	NM_001159484	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
151284	chr21	45489601	45490000	+	0	NA	intron (NM_001379500, intron 19 of 41)	intron (NM_001379500, intron 19 of 41)	11534	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
7424	chr1	32961021	32961450	+	0	NA	intron (NM_001127361, intron 1 of 8)	intron (NM_001127361, intron 1 of 8)	3574	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
17486	chr1	156720971	156721130	+	0	NA	TTS (NM_001303095)	TTS (NM_001303095)	7389	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
96359	chr17	40088571	40089050	+	0	NA	intron (NM_199334, intron 8 of 8)	intron (NM_199334, intron 8 of 8)	11779	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
45935	chr11	121236251	121236550	+	0	NA	Intergenic	AluJr|SINE|Alu	-56371	NM_006918	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
174968	chr4	49514351	49514450	+	0	NA	Intergenic	ACRO1|Satellite|acro	527758	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
183578	chr5	80166521	80166780	+	0	NA	intron (NM_001174072, intron 6 of 11)	intron (NM_001174072, intron 6 of 11)	-82985	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
12470	chr1	107871151	107871850	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-25723	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
195748	chr6	39932401	39932600	+	0	NA	intron (NM_001358530, intron 1 of 10)	intron (NM_001358530, intron 1 of 10)	1723	NM_001358534	4337		NM_005942	ENSG00000124615	MOCS1	MIG11|MOCOD|MOCS1A|MOCS1B	molybdenum cofactor synthesis 1	protein-coding
128025	chr2	47176301	47177880	+	0	NA	promoter-TSS (NM_001305625)	promoter-TSS (NM_001305625)	-154	NM_001305625	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
92693	chr17	13931651	13931950	+	0	NA	Intergenic	Intergenic	-92698	NR_003261	94158		NR_003261		CDRT15P1	CDRT15P	CDRT15 pseudogene 1	pseudo
66789	chr14	64703941	64705240	+	0	NA	5' UTR (NM_001308147, exon 1 of 17)	5' UTR (NM_001308147, exon 1 of 17)	166	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
9517	chr1	51422001	51422350	+	0	NA	promoter-TSS (NM_001159969)	promoter-TSS (NM_001159969)	-80	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
206235	chr7	29091021	29091920	+	0	NA	intron (NM_001371256, intron 10 of 16)	intron (NM_001371256, intron 10 of 16)	-33563	NR_120523	1124		NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
33436	chr10	119021521	119021780	+	0	NA	Intergenic	L2c|LINE|L2	-8064	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
192845	chr6	27155551	27155650	+	0	NA	Intergenic	AluSc8|SINE|Alu	7974	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
60525	chr13	41423621	41424450	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-18529	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
141004	chr2	238142001	238142200	+	0	NA	intron (NM_198582, intron 2 of 7)	intron (NM_198582, intron 2 of 7)	3432	NM_198582	377007		NM_198582	ENSG00000168427	KLHL30	-	kelch like family member 30	protein-coding
232793	chr9	136704171	136705230	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7872	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
169952	chr3	179105001	179105350	+	0	NA	intron (NR_125401, intron 2 of 2)	intron (NR_125401, intron 2 of 2)	-32662	NM_001375827	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
144684	chr20	36437751	36438430	+	0	NA	intron (NM_001365621, intron 4 of 12)	AluJb|SINE|Alu	-23378	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
192370	chr6	24703151	24703450	+	0	NA	3' UTR (NM_001160094, exon 4 of 4)	3' UTR (NM_001160094, exon 4 of 4)	15854	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
41310	chr11	65883051	65883150	+	0	NA	TTS (NM_198897)	TTS (NM_198897)	3263	NM_001335	1521		NM_001335	ENSG00000172543	CTSW	LYPN	cathepsin W	protein-coding
157834	chr22	47495121	47495530	+	0	NA	Intergenic	Intergenic	-8214	NR_109967	101927722		NR_109967	ENSG00000218357	LINC01644	LL22NC03-75H12.2	long intergenic non-protein coding RNA 1644	ncRNA
47871	chr12	6664971	6665800	+	0	NA	Intergenic	AluSz|SINE|Alu	-2266	NM_001127586	51147		NM_016162	ENSG00000111653	ING4	my036|p29ING4	inhibitor of growth family member 4	protein-coding
53461	chr12	65824801	65825130	+	0	NA	5' UTR (NM_001300919, exon 1 of 4)	5' UTR (NM_001300919, exon 1 of 4)	482	NM_003483	8091		NM_003483	ENSG00000149948	HMGA2	BABL|HMGI-C|HMGIC|LIPO|SRS5|STQTL9	high mobility group AT-hook 2	protein-coding
141331	chr2	240564351	240566100	+	0	NA	TTS (NM_001370465)	TTS (NM_001370465)	-3259	NM_018226	57140		NM_018226	ENSG00000142327	RNPEPL1	-	arginyl aminopeptidase like 1	protein-coding
45457	chr11	118524251	118525100	+	0	NA	3' UTR (NM_005933, exon 36 of 36)	3' UTR (NM_005933, exon 36 of 36)	-2799	NM_001346097	143941		NM_001080441	ENSG00000172425	TTC36	HBP21	tetratricopeptide repeat domain 36	protein-coding
83021	chr16	22296151	22297800	+	0	NA	promoter-TSS (NM_001258034).2	promoter-TSS (NM_001258034).2	-400	NM_001258035	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
47178	chr12	791201	791480	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	38417	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
169602	chr3	171172101	171172300	+	0	NA	intron (NM_001161560, intron 9 of 31)	intron (NM_001161560, intron 9 of 31)	-65441	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
151330	chr21	45607021	45607800	+	0	NA	Intergenic	L1MB5|LINE|L1	13756	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
67581	chr14	71597751	71598250	+	0	NA	intron (NM_001354286, intron 6 of 24)	intron (NM_001354286, intron 6 of 24)	11702	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
88556	chr16	85522151	85522430	+	0	NA	Intergenic	Intergenic	-89119	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
72984	chr15	40592771	40593500	+	0	NA	Intergenic	Intergenic	-1114	NM_144508	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
218097	chr8	38969671	38969830	+	0	NA	exon (NM_021623, exon 12 of 12)	exon (NM_021623, exon 12 of 12)	-4478	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
172677	chr4	2740121	2740380	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	16086	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
75663	chr15	67755301	67755900	+	0	NA	intron (NM_145160, intron 19 of 21)	intron (NM_145160, intron 19 of 21)	-69909	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
53800	chr12	69243101	69244100	+	0	NA	intron (NM_001300947, intron 1 of 10)	Tigger3|DNA|TcMar-Tigger	4031	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
93894	chr17	21242071	21242230	+	0	NA	3' UTR (NM_152914, exon 3 of 3)	3' UTR (NM_152914, exon 3 of 3)	11260	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
190849	chr6	1616801	1617430	+	0	NA	Intergenic	Intergenic	7200	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
85576	chr16	53476771	53477400	+	0	NA	intron (NM_001323609, intron 17 of 20)	L1MB5|LINE|L1	26124	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
39987	chr11	62618521	62619050	+	0	NA	intron (NM_001288722, intron 2 of 4)	AluSx3|SINE|Alu	3201	NM_001288722	26229		NM_012200	ENSG00000149541	B3GAT3	GLCATI|JDSCD|glcUAT-I	beta-1,3-glucuronyltransferase 3	protein-coding
71001	chr14	104729171	104729530	+	0	NA	promoter-TSS (NM_001320424)	promoter-TSS (NM_001320424)	-494	NM_199165	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
75009	chr15	64009151	64010200	+	0	NA	intron (NM_001385000, intron 2 of 11)	L2c|LINE|L2	36810	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
49919	chr12	39622371	39623150	+	0	NA	Intergenic	Intergenic	-2957	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
84549	chr16	30560901	30562230	+	0	NA	Intergenic	CpG	-3191	NM_001172679	92595		NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
180286	chr5	1882621	1882880	+	0	NA	5' UTR (NM_016358, exon 1 of 5)	5' UTR (NM_016358, exon 1 of 5)	175	NM_016358	50805		NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding
192527	chr6	25041901	25043350	+	0	NA	promoter-TSS (NM_001286446)	promoter-TSS (NM_001286446)	-337	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
217890	chr8	37877651	37877950	+	0	NA	intron (NM_025151, intron 1 of 4)	AluSx|SINE|Alu	21697	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
113326	chr19	8590901	8591100	+	0	NA	intron (NM_030957, intron 15 of 25)	intron (NM_030957, intron 15 of 25)	1196	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
62626	chr13	100673371	100674200	+	0	NA	intron (NM_001350576, intron 1 of 18)	intron (NM_001350576, intron 1 of 18)	1010	NM_001350577	84899		NM_032813	ENSG00000125247	TMTC4	DFNB122	transmembrane O-mannosyltransferase targeting cadherins 4	protein-coding
148307	chr20	63733871	63734030	+	0	NA	intron (NM_181485, intron 4 of 6)	intron (NM_181485, intron 4 of 6)	-1751	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
116495	chr19	18128001	18128400	+	0	NA	intron (NM_015016, intron 10 of 26)	intron (NM_015016, intron 10 of 26)	-24963	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
174640	chr4	40433321	40433930	+	0	NA	intron (NM_019027, intron 3 of 4)	intron (NM_019027, intron 3 of 4)	68494	NR_039966	100616274		NR_039966	ENSG00000263642	MIR4802	-	microRNA 4802	ncRNA
156415	chr22	41197021	41199200	+	0	NA	promoter-TSS (NR_110514)	promoter-TSS (NR_110514)	-609	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
15707	chr1	151006021	151007290	+	0	NA	5' UTR (NM_001376664, exon 1 of 10)	5' UTR (NM_001376664, exon 1 of 10)	247	NM_001040217	55793		NM_018379	ENSG00000143409	MINDY1	FAM63A|MINDY-1	MINDY lysine 48 deubiquitinase 1	protein-coding
235119	chrX	40730971	40731130	+	0	NA	intron (NM_004229, intron 1 of 30)	AluJb|SINE|Alu	4492	NM_004229	9282		NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
105117	chr17	82214771	82215100	+	0	NA	Intergenic	AluJr|SINE|Alu	-2093	NM_001367828	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
194223	chr6	32223771	32224050	+	0	NA	exon (NM_004557, exon 1 of 30)	exon (NM_004557, exon 1 of 30)	157	NR_134949	4855		NM_004557	ENSG00000204301	NOTCH4	INT3	notch receptor 4	protein-coding
69109	chr14	92462951	92463350	+	0	NA	intron (NM_153647, intron 13 of 17)	intron (NM_153647, intron 13 of 17)	-50631	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
1620	chr1	3717871	3718500	+	0	NA	intron (NM_001204185, intron 4 of 12)	CpG	20139	NM_001204192	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
31833	chr10	99560471	99560830	+	0	NA	Intergenic	Intergenic	27708	NM_145285	159296		NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
200921	chr6	139147471	139148000	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	12655	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
94770	chr17	30831301	30832730	+	0	NA	promoter-TSS (NM_024857)	promoter-TSS (NM_024857)	49	NM_024857	79915		NM_024857	ENSG00000176208	ATAD5	C17orf41|ELG1|FRAG1	ATPase family AAA domain containing 5	protein-coding
48477	chr12	9776851	9777350	+	0	NA	Intergenic	LTR49|LTR|ERV1	-16199	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
182007	chr5	55323371	55323730	+	0	NA	intron (NM_015360, intron 2 of 26)	AluJb|SINE|Alu	15561	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
219408	chr8	70616751	70618000	+	0	NA	intron (NR_038881, intron 1 of 3)	L2|LINE|L2	8798	NR_038881	286190		NR_038881	ENSG00000246366	LACTB2-AS1	-	LACTB2 antisense RNA 1	ncRNA
156688	chr22	41670301	41670880	+	0	NA	Intergenic	AluSx|SINE|Alu	18277	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
211394	chr7	105025371	105025530	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	11245	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
186322	chr5	134598501	134598700	+	0	NA	Intergenic	AluSx|SINE|Alu	34228	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
194347	chr6	32892951	32893250	+	0	NA	Intergenic	Intergenic	-1076	NR_037177	100294145		NR_037177	ENSG00000289047	LOC100294145	-	uncharacterized LOC100294145	ncRNA
165969	chr3	107985451	107985830	+	0	NA	Intergenic	Intergenic	102435	NR_015394	285205		NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
32805	chr10	109903051	109903580	+	0	NA	intron (NM_001324131, intron 3 of 20)	intron (NM_001324131, intron 3 of 20)	19931	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
56035	chr12	110440821	110441080	+	0	NA	intron (NM_001287222, intron 2 of 6)	AluY|SINE|Alu	9387	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
32491	chr10	102682521	102682780	+	0	NA	intron (NM_004311, intron 5 of 5)	intron (NM_004311, intron 5 of 5)	31747	NM_004311	403		NM_004311	ENSG00000138175	ARL3	ARFL3|JBTS35|RP83	ADP ribosylation factor like GTPase 3	protein-coding
153778	chr22	29583701	29583900	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2687	NM_003634	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
226427	chr9	70625151	70625250	+	0	NA	exon (NM_001007471, exon 13 of 25)	exon (NM_001007471, exon 13 of 25)	184884	NR_029621	406987		NR_029621	ENSG00000207935	MIR204	MIRN204|RDICC|miRNA204|mir-204	microRNA 204	ncRNA
61424	chr13	51819071	51819600	+	0	NA	intron (NM_001351006, intron 2 of 2)	intron (NM_001351006, intron 2 of 2)	-15172	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
171241	chr3	195786151	195786250	+	0	NA	exon (NM_001322468, exon 6 of 42)	exon (NM_001322468, exon 6 of 42)	25729	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
220258	chr8	97648721	97649730	+	0	NA	intron (NM_178812, intron 1 of 11)	intron (NM_178812, intron 1 of 11)	5041	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
30149	chr10	74148421	74148980	+	0	NA	intron (NM_207012, intron 1 of 9)	AluJr4|SINE|Alu	2128	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
24329	chr1	237811771	237811930	+	0	NA	intron (NM_001035, intron 100 of 104)	intron (NM_001035, intron 100 of 104)	-50325	NR_027247	100130331		NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
207622	chr7	44998971	45000800	+	0	NA	promoter-TSS (NM_001167935)	promoter-TSS (NM_001167935)	139	NR_030770	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
9815	chr1	53878651	53878900	+	0	NA	intron (NM_018982, intron 4 of 10)	intron (NM_018982, intron 4 of 10)	11022	NM_018982	54432		NM_018982	ENSG00000058799	YIPF1	DJ167A19.1|FinGER1|YIPFbeta3A|Yip5a	Yip1 domain family member 1	protein-coding
119139	chr19	39375651	39376030	+	0	NA	exon (NM_001384584, exon 6 of 15)	exon (NM_001384584, exon 6 of 15)	15266	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
208434	chr7	66837671	66837830	+	0	NA	intron (NR_003934, intron 3 of 10)	intron (NR_003934, intron 3 of 10)	7076	NR_003934	729156		NR_003934	ENSG00000291206	GTF2IRD1P1	-	GTF2I repeat domain containing 1 pseudogene 1	pseudo
77532	chr15	84722351	84722450	+	0	NA	Intergenic	Intergenic	-5940	NM_001271920	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
127273	chr2	38718901	38719330	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	32246	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
131433	chr2	96296471	96296830	+	0	NA	exon (NM_014014, exon 13 of 45)	exon (NM_014014, exon 13 of 45)	8896	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
76298	chr15	74316421	74316680	+	0	NA	intron (NM_025055, intron 11 of 18)	intron (NM_025055, intron 11 of 18)	-2009	NM_001287181	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
174996	chr4	50605851	50605950	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1237100	NM_015115	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
27659	chr10	33028601	33029430	+	0	NA	Intergenic	AluJr|SINE|Alu	-70785	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
139422	chr2	222709221	222709480	+	0	NA	intron (NM_058165, intron 5 of 5)	intron (NM_058165, intron 5 of 5)	37692	NM_058165	116255		NM_058165	ENSG00000124003	MOGAT1	DGAT2L|DGAT2L1|MGAT1	monoacylglycerol O-acyltransferase 1	protein-coding
162074	chr3	46876151	46876450	+	0	NA	Intergenic	Intergenic	-1421	NM_000316	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
978	chr1	1822571	1822730	+	0	NA	intron (NM_001282539, intron 2 of 10)	intron (NM_001282539, intron 2 of 10)	-42619	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
80488	chr16	2709801	2710100	+	0	NA	TTS (NM_018992)	TTS (NM_018992)	10274	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
187109	chr5	140400621	140403400	+	0	NA	exon (NM_017747, exon 1 of 34)	exon (NM_017747, exon 1 of 34)	177	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
171823	chr4	672721	673000	+	0	NA	intron (NM_007100, intron 3 of 3)	AluSq|SINE|Alu	1416	NM_007100	521		NM_007100	ENSG00000169020	ATP5ME	ATP5I|ATP5K	ATP synthase membrane subunit e	protein-coding
180663	chr5	18739171	18739330	+	0	NA	Intergenic	Intergenic	931976	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
209866	chr7	90403051	90404220	+	0	NA	intron (NM_012129, intron 1 of 2)	intron (NM_012129, intron 1 of 2)	174	NM_001185073	9069		NM_012129	ENSG00000157224	CLDN12	-	claudin 12	protein-coding
98594	chr17	47742421	47743180	+	0	NA	intron (NM_013351, intron 2 of 5)	intron (NM_013351, intron 2 of 5)	9564	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
150105	chr21	37450501	37450900	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	30401	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
81453	chr16	8883851	8884630	+	0	NA	Intergenic	Intergenic	-15228	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
181566	chr5	43156151	43156550	+	0	NA	intron (NM_003432, intron 4 of 7)	HERVL40-int|LTR|ERVL	34785	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
83391	chr16	27109771	27110700	+	0	NA	Intergenic	Intergenic	43308	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
189290	chr5	172110871	172111630	+	0	NA	intron (NM_005990, intron 4 of 18)	intron (NM_005990, intron 4 of 18)	76974	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
115703	chr19	16207851	16207950	+	0	NA	intron (NM_001130524, intron 3 of 12)	intron (NM_001130524, intron 3 of 12)	9989	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
63487	chr13	114174671	114175480	+	0	NA	Intergenic	Intergenic	-42452	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
11842	chr1	92958151	92958730	+	0	NA	intron (NM_001006605, intron 1 of 4)	intron (NM_001006605, intron 1 of 4)	3022	NM_001006605	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
2133	chr1	8347801	8348000	+	0	NA	Intergenic	Intergenic	29786	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
104022	chr17	80122001	80122200	+	0	NA	Intergenic	Intergenic	20519	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
118788	chr19	38400101	38400500	+	0	NA	TTS (NR_073032)	TTS (NR_073032)	-2835	NM_174905	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
47003	chr12	180571	180730	+	0	NA	Intergenic	Intergenic	-22995	NR_120475	101929384		NR_120475	ENSG00000256577	SLC6A12-AS1	-	SLC6A12 antisense RNA 1	ncRNA
175755	chr4	77759221	77759480	+	0	NA	intron (NM_144571, intron 4 of 11)	AluY|SINE|Alu	59714	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
79796	chr16	1393221	1393550	+	0	NA	intron (NM_001372107, intron 7 of 14)	intron (NM_001372107, intron 7 of 14)	-13733	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
60899	chr13	46160221	46160950	+	0	NA	intron (NM_002298, intron 1 of 15)	intron (NM_002298, intron 1 of 15)	21592	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
90618	chr17	1641101	1641380	+	0	NA	intron (NM_145350, intron 4 of 10).2	MER1A|DNA|hAT-Charlie	4492	NM_145350	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
42200	chr11	68001601	68002350	+	0	NA	intron (NM_030930, intron 3 of 10)	AluSx1|SINE|Alu	2122	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
57567	chr12	122236971	122237530	+	0	NA	intron (NM_001351018, intron 10 of 12)	intron (NM_001351018, intron 10 of 12)	-9794	NM_019887	56616		NM_019887	ENSG00000184047	DIABLO	DFNA64|SMAC	diablo IAP-binding mitochondrial protein	protein-coding
133041	chr2	112154471	112155030	+	0	NA	intron (NM_153214, intron 1 of 7)	intron (NM_153214, intron 1 of 7)	16365	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
124777	chr2	7428621	7428880	+	0	NA	intron (NR_038432, intron 3 of 5)	intron (NR_038432, intron 3 of 5)	7489	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
136165	chr2	174390071	174390630	+	0	NA	intron (NM_004882, intron 1 of 9)	THE1C-int|LTR|ERVL-MaLR	5362	NM_004882	9541		NM_004882	ENSG00000138433	CIR1	CIR	corepressor interacting with RBPJ, CIR1	protein-coding
141468	chr2	241069701	241070100	+	0	NA	intron (NM_001080437, intron 23 of 31)	intron (NM_001080437, intron 23 of 31)	32387	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
148665	chr21	6124451	6125300	+	0	NA	Intergenic	L1MB3|LINE|L1	13744	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
111718	chr19	4331071	4331430	+	0	NA	intron (NM_001013841, intron 4 of 12)	AluJo|SINE|Alu	7577	NM_001013841	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
151798	chr22	18197801	18198530	+	0	NA	intron (NR_136570, intron 3 of 11)	intron (NR_136570, intron 3 of 11)	7744	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
179832	chr5	472171	473700	+	0	NA	promoter-TSS (NR_024158)	promoter-TSS (NR_024158)	30	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
73476	chr15	43589921	43590530	+	0	NA	promoter-TSS (NM_001354383)	promoter-TSS (NM_001354383)	28	NM_001190214	9677		NM_014659	ENSG00000168781	PPIP5K1	HISPPD2A|IP6K|IPS1|VIP1|hsVIP1	diphosphoinositol pentakisphosphate kinase 1	protein-coding
29836	chr10	72331121	72332600	+	0	NA	TTS (NM_017626)	TTS (NM_017626)	23059	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
24127	chr1	235802701	235802900	+	0	NA	intron (NM_001301365, intron 8 of 52)	MIRc|SINE|MIR	50260	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
30347	chr10	77711121	77711750	+	0	NA	Intergenic	CpG	-73627	NM_001322836	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
5126	chr1	24886721	24887080	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	32516	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
12063	chr1	98661501	98662100	+	0	NA	promoter-TSS (NR_033716)	promoter-TSS (NR_033716)	79	NR_033716	51375		NM_015976	ENSG00000162627	SNX7	-	sorting nexin 7	protein-coding
184152	chr5	95622271	95623000	+	0	NA	TTS (NM_199243)	TTS (NM_199243)	2548	NM_199243	285601		NM_199243	ENSG00000178015	GPR150	PGR11	G protein-coupled receptor 150	protein-coding
148801	chr21	8241871	8242030	+	0	NA	intron (NR_003287, intron 1 of 2)	intron (NR_003287, intron 1 of 2)	-7555	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
134927	chr2	151291921	151292380	+	0	NA	Intergenic	L2b|LINE|L2	-2482	NM_004688	9111		NM_004688	ENSG00000123609	NMI	-	N-myc and STAT interactor	protein-coding
204929	chr7	6232471	6232930	+	0	NA	intron (NM_004227, intron 1 of 12)	intron (NM_004227, intron 1 of 12)	39924	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
125651	chr2	19955871	19956180	+	0	NA	intron (NM_020779, intron 11 of 26)	intron (NM_020779, intron 11 of 26)	34080	NM_020779	57539		NM_020779	ENSG00000118965	WDR35	CED2|CFAP118|FAP118|IFT121|IFTA1|SRTD7	WD repeat domain 35	protein-coding
115604	chr19	16062551	16063300	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-2762	NR_146442	105372292		NR_146442	ENSG00000267517	LINC01855	-	long intergenic non-protein coding RNA 1855	ncRNA
213374	chr7	135938351	135938880	+	0	NA	intron (NM_001128619, intron 3 of 3)	intron (NM_001128619, intron 3 of 3)	38744	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
172858	chr4	3296001	3296600	+	0	NA	Intergenic	AluJo|SINE|Alu	-17847	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
235060	chrX	40153321	40154530	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	23352	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
169420	chr3	161222801	161223180	+	0	NA	intron (NM_001320227, intron 2 of 16)	intron (NM_001320227, intron 2 of 16)	1679	NM_015938	51068		NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
89885	chr16	89655201	89656180	+	0	NA	intron (NM_002768, intron 1 of 6)	AluSx|SINE|Alu	2018	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
25467	chr10	6667701	6668000	+	0	NA	Intergenic	Intergenic	32780	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
17295	chr1	156440771	156441850	+	0	NA	Intergenic	L3|LINE|CR1	-11762	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
38364	chr11	44610421	44610730	+	0	NA	intron (NM_002231, intron 6 of 9)	intron (NM_002231, intron 6 of 9)	44912	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
180764	chr5	32156671	32157230	+	0	NA	intron (NM_022130, intron 1 of 3)	intron (NM_022130, intron 1 of 3)	17369	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
69307	chr14	93139101	93139530	+	0	NA	Intergenic	L2a|LINE|L2	-23390	NM_014216	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
197727	chr6	87128971	87129330	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-26415	NM_015021	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
795	chr1	1544471	1544630	+	0	NA	intron (NM_014188, intron 3 of 4)	AluSz|SINE|Alu	-3926	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
82907	chr16	21644801	21645830	+	0	NA	intron (NM_005849, intron 2 of 5).2	AluSz|SINE|Alu	7293	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
216383	chr8	17914721	17915400	+	0	NA	Intergenic	Intergenic	-7797	NM_001352660	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
94250	chr17	28685551	28685850	+	0	NA	intron (NM_003170, intron 19 of 36)	AluJb|SINE|Alu	23495	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
194841	chr6	34416901	34417430	+	0	NA	TTS (NM_001014)	TTS (NM_001014)	8904	NM_001204091	6204		NM_001014	ENSG00000124614	RPS10	DBA9|S10|eS10	ribosomal protein S10	protein-coding
115954	chr19	16828851	16830050	+	0	NA	promoter-TSS (NM_015260)	promoter-TSS (NM_015260)	52	NM_015260	23309		NM_015260	ENSG00000127511	SIN3B	-	SIN3 transcription regulator family member B	protein-coding
125901	chr2	24791001	24791700	+	0	NA	intron (NM_001013663, intron 1 of 1)	intron (NM_001013663, intron 1 of 1)	-1765	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
99832	chr17	55238081	55239200	+	0	NA	Intergenic	CpG	-26320	NM_002126	3131		NM_002126	ENSG00000108924	HLF	-	HLF transcription factor, PAR bZIP family member	protein-coding
44482	chr11	105044321	105044630	+	0	NA	exon (NM_052889, exon 2 of 4)	exon (NM_052889, exon 2 of 4)	849	NM_052889	114769		NM_052889	ENSG00000204397	CARD16	COP|COP1|LLID-114769|PSEUDO-ICE	caspase recruitment domain family member 16	protein-coding
143449	chr20	30358321	30358580	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-18714	NR_003579	284802		NM_207350		FRG1BP	C20orf80|FRG1B|bA348I14.2	FSHD region gene 1 family member B, pseudogene	pseudo
17260	chr1	156378121	156378580	+	0	NA	exon (NM_020407, exon 4 of 10)	exon (NM_020407, exon 4 of 10)	9139	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
102218	chr17	75230851	75231230	+	0	NA	intron (NM_024844, intron 11 of 18)	AluSz6|SINE|Alu	25361	NM_024844	79902		NM_024844	ENSG00000125450	NUP85	FROUNT|NPHS17|Nup75	nucleoporin 85	protein-coding
158800	chr3	9700401	9700600	+	0	NA	intron (NM_001077525, intron 18 of 18)	intron (NM_001077525, intron 18 of 18)	-3333	NM_001308388	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
182834	chr5	69236001	69236700	+	0	NA	intron (NM_001324070, intron 2 of 8).2	MIRb|SINE|MIR	1464	NR_136690	1022		NM_001799	ENSG00000134058	CDK7	CAK|CAK1|CDKN7|HCAK|MO15|STK1|p39MO15	cyclin dependent kinase 7	protein-coding
62448	chr13	99342971	99343130	+	0	NA	intron (NR_026644, intron 7 of 8)	ERV3-16A3_I-int|LTR|ERVL	-8370	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
22385	chr1	218348521	218349000	+	0	NA	intron (NM_003238, intron 1 of 6)	intron (NM_003238, intron 1 of 6)	-3082	NR_046268	728463		NR_046268		TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
157007	chr22	42520901	42521100	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	-1204	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
24099	chr1	235421521	235422180	+	0	NA	intron (NM_001287801, intron 5 of 17).2	intron (NM_001287801, intron 5 of 17).2	54423	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
223958	chr9	1366421	1366680	+	0	NA	Intergenic	Intergenic	315063	NM_001370532	10655		NM_006557	ENSG00000173253	DMRT2	DSXL-2	doublesex and mab-3 related transcription factor 2	protein-coding
136504	chr2	177238551	177238650	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	17410	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
141837	chr20	433221	434230	+	0	NA	Intergenic	MER21C|LTR|ERVL	25426	NR_136659	10616		NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RANBP2-type and C3HC4-type zinc finger containing 1	protein-coding
14837	chr1	146342671	146343430	+	0	NA	3' UTR (NM_001368128, exon 1 of 1)	3' UTR (NM_001368128, exon 1 of 1)	1857	NM_001368128	105371242		NM_001368128	ENSG00000270339	PPIAL4H	-	peptidylprolyl isomerase A like 4H	protein-coding
19126	chr1	171516701	171517100	+	0	NA	intron (NM_015172, intron 5 of 33)	MLT1F|LTR|ERVL-MaLR	31370	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
26220	chr10	14577071	14577430	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-4875	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
204194	chr7	2497401	2497600	+	0	NA	Intergenic	Intergenic	-15029	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
4708	chr1	23167121	23168200	+	0	NA	intron (NM_033631, intron 1 of 4)	intron (NM_033631, intron 1 of 4)	1196	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
106661	chr18	23069421	23070250	+	0	NA	Intergenic	Intergenic	-64729	NR_023359	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
237593	chrX	123863251	123863830	+	0	NA	intron (NM_001378590, intron 1 of 6)	AluSp|SINE|Alu	3090	NM_001378590	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
78140	chr15	90396371	90396880	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	8383	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
119267	chr19	39518751	39519050	+	0	NA	intron (NR_146916, intron 2 of 3)	intron (NR_146916, intron 2 of 3)	3477	NR_146916	348303		NM_182704	ENSG00000186838	SELENOV	SELV	selenoprotein V	protein-coding
223608	chr8	144312471	144312830	+	0	NA	intron (NM_005526, intron 9 of 12)	intron (NM_005526, intron 9 of 12)	4665	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
65504	chr14	51888771	51889230	+	0	NA	intron (NM_053064, intron 2 of 3)	L1MB7|LINE|L1	28388	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
125378	chr2	11157371	11157530	+	0	NA	intron (NM_001282710, intron 1 of 5)	intron (NM_001282710, intron 1 of 5)	1983	NM_152391	130814		NM_152391	ENSG00000162976	SLC66A3	C2orf22|PQLC3	solute carrier family 66 member 3	protein-coding
18207	chr1	160954151	160954600	+	0	NA	intron (NM_080878, intron 2 of 7)	intron (NM_080878, intron 2 of 7)	434	NM_080878	142683		NM_080878	ENSG00000158764	ITLN2	HL-2|HL2	intelectin 2	protein-coding
37572	chr11	19072701	19072900	+	0	NA	Intergenic	Intergenic	-12083	NM_054030	117194		NM_054030	ENSG00000183695	MRGPRX2	MGRG3|MRGX2	MAS related GPR family member X2	protein-coding
10914	chr1	83931621	83931980	+	0	NA	intron (NM_001350215, intron 8 of 19)	intron (NM_001350215, intron 8 of 19)	67332	NM_001350214	79739		NM_024686	ENSG00000137941	TTLL7	-	tubulin tyrosine ligase like 7	protein-coding
43193	chr11	75411771	75412380	+	0	NA	intron (NM_001256802, intron 6 of 6)	intron (NM_001256802, intron 6 of 6)	7654	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
216089	chr8	10990201	10990480	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	44962	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
150564	chr21	43104471	43105130	+	0	NA	intron (NM_001025204, intron 1 of 8).2	intron (NM_001025204, intron 1 of 8).2	2770	NM_006758	7307		NM_006758	ENSG00000160201	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
4647	chr1	22136901	22137100	+	0	NA	intron (NM_030761, intron 1 of 4)	intron (NM_030761, intron 1 of 4)	6097	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
12609	chr1	109087521	109088250	+	0	NA	Intergenic	Intergenic	-2879	NM_020141	56900		NM_020141	ENSG00000215717	TMEM167B	AD-020|C1orf119	transmembrane protein 167B	protein-coding
31180	chr10	91190501	91190700	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	27588	NM_001257101	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
209898	chr7	91947171	91947530	+	0	NA	intron (NM_147185, intron 1 of 49)	AluSx3|SINE|Alu	6488	NM_005751	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
183986	chr5	89314051	89314430	+	0	NA	intron (NR_136219, intron 7 of 9)	intron (NR_136219, intron 7 of 9)	-410135	NM_001193347	4208		NM_002397	ENSG00000081189	MEF2C	C5DELq14.3|DEL5q14.3|NEDHSIL	myocyte enhancer factor 2C	protein-coding
219064	chr8	65808921	65809380	+	0	NA	intron (NM_001242318, intron 1 of 12)	MIRc|SINE|MIR	-20093	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
95088	chr17	34155371	34155550	+	0	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	1346	NM_001094	40		NM_001094	ENSG00000108684	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid sensing ion channel subunit 2	protein-coding
20999	chr1	202805001	202805200	+	0	NA	intron (NM_006618, intron 1 of 26)	intron (NM_006618, intron 1 of 26)	3321	NM_006618	10765		NM_006618	ENSG00000117139	KDM5B	CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1	lysine demethylase 5B	protein-coding
59552	chr13	27293071	27293470	+	0	NA	Intergenic	Intergenic	22093	NM_001331126	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
152109	chr22	19890551	19890930	+	0	NA	intron (NR_147957, intron 10 of 16)	intron (NR_147957, intron 10 of 16)	-35866	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
239106	chrY	11201271	11201430	+	0	NA	Intergenic	Intergenic	1220240	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
96157	chr17	39683551	39684050	+	0	NA	intron (NM_001291726, intron 2 of 6)	intron (NM_001291726, intron 2 of 6)	4257	NM_033419	93210		NM_033419	ENSG00000161395	PGAP3	AGLA546|CAB2|PERLD1|PP1498|hCOS16	post-GPI attachment to proteins phospholipase 3	protein-coding
69936	chr14	99600651	99601230	+	0	NA	intron (NM_001144995, intron 1 of 5)	AluJb|SINE|Alu	3267	NM_001144995	317762		NM_022747	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
50211	chr12	46210431	46211580	+	0	NA	intron (NM_001278387, intron 6 of 17)	intron (NM_001278387, intron 6 of 17)	55511	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
71873	chr15	22388521	22388780	+	0	NA	Intergenic	Intergenic	49376	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
181598	chr5	43497551	43497930	+	0	NA	intron (NM_198566, intron 6 of 12)	intron (NM_198566, intron 6 of 12)	-13353	NM_001377396	64417		NM_022483	ENSG00000151881	TMEM267	C5orf28	transmembrane protein 267	protein-coding
139600	chr2	225008671	225009430	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	1490	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
234242	chrX	13080501	13081100	+	0	NA	Intergenic	L2a|LINE|L2	-36180	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
122740	chr19	50093271	50093650	+	0	NA	promoter-TSS (NR_024214).2	promoter-TSS (NR_024214).2	-851	NR_024229	100170216		NR_024229		SNAR-A10	-	small NF90 (ILF3) associated RNA A10	snRNA
47669	chr12	6334921	6336200	+	0	NA	intron (NR_144351, intron 1 of 8)	intron (NR_144351, intron 1 of 8)	6516	NM_001346091	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
5313	chr1	25227871	25228030	+	0	NA	intron (NM_015484, intron 4 of 6)	intron (NM_015484, intron 4 of 6)	4552	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
59044	chr13	20523921	20524450	+	0	NA	intron (NM_015974, intron 1 of 7)	AluJb|SINE|Alu	1672	NM_015974	51084		NM_015974	ENSG00000165475	CRYL1	GDH|HEL30|gul3DH|lambda-CRY	crystallin lambda 1	protein-coding
147287	chr20	57609571	57609730	+	0	NA	intron (NR_136660, intron 6 of 7)	intron (NR_136660, intron 6 of 7)	10776	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
164457	chr3	59540771	59540930	+	0	NA	Intergenic	Intergenic	117647	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
207400	chr7	44229221	44229980	+	0	NA	intron (NM_001220, intron 17 of 23)	intron (NM_001220, intron 17 of 23)	28622	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
203221	chr6	168370301	168370600	+	0	NA	Intergenic	Intergenic	-50673	NR_104425	168002		NM_214462	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled binding antagonist of beta catenin 2	protein-coding
202388	chr6	157833651	157834450	+	0	NA	intron (NM_016224, intron 1 of 17)	LTR45B|LTR|ERV1	10804	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
116982	chr19	18879401	18880800	+	0	NA	intron (NM_021267, intron 4 of 7)	intron (NM_021267, intron 4 of 7)	16058	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
82336	chr16	15890301	15890700	+	0	NA	Intergenic	AluJr|SINE|Alu	-1897	NM_001304502	123811		NM_144600	ENSG00000133393	CEP20	C16orf63|FOPNL|FOR20|PHSECRG2	centrosomal protein 20	protein-coding
106805	chr18	23964051	23965750	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-27987	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
104944	chr17	81938821	81939780	+	0	NA	TTS (NM_001145113)	TTS (NM_001145113)	-1972	NM_001282280	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
83856	chr16	28882251	28882700	+	0	NA	exon (NM_004320, exon 5 of 23)	exon (NM_004320, exon 5 of 23)	2432	NM_001286075	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
58500	chr12	132168671	132168830	+	0	NA	Intergenic	Intergenic	20945	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
14014	chr1	120723351	120724400	+	0	NA	promoter-TSS (NR_157049)	promoter-TSS (NR_157049)	-64	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
116213	chr19	17505451	17505950	+	0	NA	3' UTR (NM_198580, exon 12 of 12)	3' UTR (NM_198580, exon 12 of 12)	-5949	NM_012088	25796		NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
38928	chr11	47457201	47457600	+	0	NA	Intergenic	AluSc8|SINE|Alu	-8264	NM_032645	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
156293	chr22	40501101	40502330	+	0	NA	intron (NM_001282661, intron 3 of 13)	SVA_F|Retroposon|SVA	-20085	NR_109965	101927257		NR_109965	ENSG00000232564	MRTFA-AS1	-	MRTFA antisense RNA 1	ncRNA
141496	chr2	241110401	241111000	+	0	NA	intron (NM_001252120, intron 16 of 18)	intron (NM_001252120, intron 16 of 18)	-8368	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
151766	chr22	17994901	17995400	+	0	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-14189	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
190876	chr6	2243201	2244180	+	0	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	1915	NM_001500	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
139950	chr2	230861371	230862450	+	0	NA	Intergenic	Intergenic	-2275	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
87163	chr16	69323801	69324430	+	0	NA	intron (NM_013245, intron 10 of 10)	intron (NM_013245, intron 10 of 10)	6473	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
192435	chr6	24890871	24891330	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-13735	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
56941	chr12	120471171	120471580	+	0	NA	intron (NM_001037494, intron 1 of 2)	AluSz6|SINE|Alu	1533	NM_001037494	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
157444	chr22	45239701	45241700	+	0	NA	exon (NM_001009880, exon 1 of 10)	exon (NM_001009880, exon 1 of 10)	194	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
107240	chr18	37343371	37343530	+	0	NA	intron (NR_148519, intron 2 of 12)	intron (NR_148519, intron 2 of 12)	68990	NR_134588	105372068		NR_134588	ENSG00000267202	LOC105372068	-	uncharacterized LOC105372068	ncRNA
172970	chr4	3942201	3942760	+	0	NA	non-coding (NR_130740, exon 4 of 4)	non-coding (NR_130740, exon 4 of 4)	12948	NR_130742	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
72943	chr15	40445821	40446350	+	0	NA	intron (NR_125372, intron 1 of 4)	intron (NR_125372, intron 1 of 4)	5132	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
88272	chr16	82996871	82997050	+	0	NA	intron (NM_001220490, intron 2 of 12)	(ATGATG)n|Simple_repeat|Simple_repeat	-6662	NR_110937	101928417		NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
163145	chr3	50144671	50145680	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-9883	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
165806	chr3	105815901	105816500	+	0	NA	intron (NM_001321811, intron 3 of 16)	L1PA7|LINE|L1	51391	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
154156	chr22	31280801	31281180	+	0	NA	TTS (NM_001135911)	TTS (NM_001135911)	11498	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
151475	chr21	46234771	46234930	+	0	NA	TTS (NM_003906)	TTS (NM_003906)	5619	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
158678	chr3	5181621	5182080	+	0	NA	TTS (NM_018184)	TTS (NM_018184)	-5857	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
32780	chr10	104354801	104355000	+	0	NA	intron (NM_001008723, intron 1 of 17)	intron (NM_001008723, intron 1 of 17)	1067	NM_001008723	159686		NM_001008723	ENSG00000120051	CFAP58	C10orf80|CCDC147|SPGF49|bA127L20.4|bA127L20.5|bA554P13.1	cilia and flagella associated protein 58	protein-coding
108829	chr18	79047871	79048330	+	0	NA	Intergenic	Intergenic	-21294	NM_001306085	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
238827	chrX	154438521	154439000	+	0	NA	intron (NM_001493, intron 2 of 10)	intron (NM_001493, intron 2 of 10)	1606	NM_001493	2664		NM_001493	ENSG00000203879	GDI1	1A|GDIL|MRX41|MRX48|OPHN2|RABGD1A|RABGDIA|XAP-4|XLID41	GDP dissociation inhibitor 1	protein-coding
134402	chr2	138516001	138516380	+	0	NA	intron (NM_001001664, intron 1 of 10)	intron (NM_001001664, intron 1 of 10)	14420	NM_001001664	339745		NM_001001664	ENSG00000144228	SPOPL	BTBD33	speckle type BTB/POZ protein like	protein-coding
37776	chr11	32312971	32313130	+	0	NA	Intergenic	Intergenic	87350	NM_001367854	7490		NM_000378	ENSG00000184937	WT1	AWT1|GUD|NPHS4|WAGR|WIT-2|WT-1|WT33	WT1 transcription factor	protein-coding
33574	chr10	119489101	119490300	+	0	NA	Intergenic	Intergenic	46833	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
166061	chr3	108827521	108827930	+	0	NA	intron (NM_001317747, intron 1 of 4)	intron (NM_001317747, intron 1 of 4)	4939	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
19313	chr1	173255271	173255430	+	0	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	-48019	NM_003326	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
194368	chr6	32973801	32974400	+	0	NA	intron (NM_001199456, intron 1 of 11).2	intron (NM_001199456, intron 1 of 11).2	1016	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
62555	chr13	99895021	99896280	+	0	NA	intron (NR_104592, intron 8 of 9)	CpG	61515	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
226535	chr9	72271851	72272130	+	0	NA	Intergenic	Intergenic	-33446	NR_110952	100507540		NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
86833	chr16	67892171	67892330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1004	NM_006742	5681		NM_006742	ENSG00000159792	PSKH1	-	protein serine kinase H1	protein-coding
56778	chr12	120183501	120183900	+	0	NA	intron (NM_006836, intron 4 of 57)	intron (NM_006836, intron 4 of 57)	11015	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
59756	chr13	30111851	30112280	+	0	NA	Intergenic	Intergenic	-3190	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
83699	chr16	28473751	28474050	+	0	NA	intron (NM_001286109, intron 13 of 13)	L1M4|LINE|L1	18174	NM_001286109	1201		NM_000086	ENSG00000188603	CLN3	BTN1|BTS|JNCL	CLN3 lysosomal/endosomal transmembrane protein, battenin	protein-coding
54343	chr12	89678021	89678730	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	30463	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
2563	chr1	9783551	9783650	+	0	NA	intron (NM_014944, intron 1 of 17)	AluSx|SINE|Alu	40365	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
218046	chr8	38808051	38808680	+	0	NA	intron (NM_001352791, intron 1 of 11)	intron (NM_001352791, intron 1 of 11)	2915	NM_001352802	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
16244	chr1	153955101	153955750	+	0	NA	intron (NM_181715, intron 1 of 13)	AluY|SINE|Alu	3187	NM_181715	200186		NM_181715	ENSG00000160741	CRTC2	TORC-2|TORC2	CREB regulated transcription coactivator 2	protein-coding
124799	chr2	7469721	7469980	+	0	NA	Intergenic	L2b|LINE|L2	48589	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
63039	chr13	112968071	112969800	+	0	NA	promoter-TSS (NR_034002)	promoter-TSS (NR_034002)	-279	NM_001112732	23263		NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
203433	chr7	349121	349750	+	0	NA	Intergenic	Intergenic	-29990	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
198191	chr6	96839271	96839430	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-1873	NM_030784	81491		NM_030784	ENSG00000112218	GPR63	PSP24(beta)|PSP24B	G protein-coupled receptor 63	protein-coding
21478	chr1	205631701	205632780	+	0	NA	promoter-TSS (NM_001973)	promoter-TSS (NM_001973)	-229	NM_001973	2005		NM_001973	ENSG00000158711	ELK4	SAP1	ETS transcription factor ELK4	protein-coding
214428	chr7	149862601	149862800	+	0	NA	intron (NM_001099220, intron 7 of 7)	MIRb|SINE|MIR	-10264	NM_001367792	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
151562	chr21	46559251	46560030	+	0	NA	intron (NM_001353942, intron 32 of 37)	intron (NM_001353942, intron 32 of 37)	45442	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
199203	chr6	111787621	111787950	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-27868	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
1341	chr1	2473471	2473830	+	0	NA	intron (NM_001303012, intron 1 of 21)	intron (NM_001303012, intron 1 of 21)	-2639	NM_014638	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
102120	chr17	75034401	75035380	+	0	NA	intron (NR_110835, intron 2 of 7)	CpG	2319	NR_110835	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
13997	chr1	120664421	120664680	+	0	NA	intron (NR_144516, intron 1 of 43)	intron (NR_144516, intron 1 of 43)	886	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
202626	chr6	158747171	158747730	+	0	NA	intron (NM_001318745, intron 9 of 14)	AluJr|SINE|Alu	17303	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
139878	chr2	230661401	230662230	+	0	NA	Intergenic	MIR|SINE|MIR	38714	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
194396	chr6	33001171	33001530	+	0	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	8241	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
195510	chr6	37191401	37192130	+	0	NA	Intergenic	AluSg|SINE|Alu	21613	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
181762	chr5	50724301	50724900	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	57186	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
208844	chr7	73699821	73700180	+	0	NA	3' UTR (NM_004603, exon 10 of 10)	3' UTR (NM_004603, exon 10 of 10)	-11317	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
41049	chr11	65471451	65472900	+	0	NA	Intergenic	Intergenic	16889	NR_160547	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
233480	chr9	137807751	137808050	+	0	NA	intron (NM_024757, intron 18 of 26)	L1MEc|LINE|L1	-19494	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
131843	chr2	98679871	98680030	+	0	NA	intron (NM_012214, intron 2 of 15)	intron (NM_012214, intron 2 of 15)	-16477	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
45041	chr11	117039971	117040750	+	0	NA	intron (NM_001281748, intron 1 of 24)	MIR|SINE|MIR	58068	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
60656	chr13	42969531	42970100	+	0	NA	intron (NM_001331228, intron 1 of 9)	intron (NM_001331228, intron 1 of 9)	22426	NM_033255	94240		NM_033255	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1	protein-coding
179711	chr5	10051	11090	+	0	NA	Intergenic	(TAACCC)n|Simple_repeat|Simple_repeat	-81598	NM_052909	153478		NM_052909	ENSG00000153404	PLEKHG4B	ARHGEF48	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
47361	chr12	2249101	2249300	+	0	NA	intron (NM_199460, intron 3 of 49)	MIR|SINE|MIR	-20576	NR_046769	100874370		NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
127718	chr2	43425771	43425930	+	0	NA	intron (NR_144316, intron 28 of 36)	MIRb|SINE|MIR	170124	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
18719	chr1	167458951	167459800	+	0	NA	intron (NM_198053, intron 1 of 7)	AluSx|SINE|Alu	59154	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
153982	chr22	30381871	30382430	+	0	NA	intron (NM_001017981, intron 5 of 8)	AluSp|SINE|Alu	-4245	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
173021	chr4	4488401	4489100	+	0	NA	intron (NM_001346282, intron 1 of 10)	intron (NM_001346282, intron 1 of 10)	-7050	NR_126434	104472519		NR_126434	ENSG00000248221	STX18-IT1	-	STX18 intronic transcript 1	ncRNA
78017	chr15	89867201	89867600	+	0	NA	intron (NR_023361, intron 5 of 6)	SVA_F|Retroposon|SVA	16630	NR_049807	100846993		NR_049807	ENSG00000264796	MIR5009	-	microRNA 5009	ncRNA
164622	chr3	66389651	66389950	+	0	NA	intron (NM_001377344, intron 11 of 17)	HSMAR2|DNA|TcMar-Mariner	15967	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
88625	chr16	85623601	85623800	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	10378	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
79592	chr16	1042701	1044080	+	0	NA	Intergenic	Intergenic	-29366	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
153213	chr22	23898071	23898380	+	0	NA	intron (NR_038911, intron 1 of 2).2	intron (NR_038911, intron 1 of 2).2	705	NR_038911	284889		NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA
113293	chr19	8555321	8556330	+	0	NA	intron (NM_012335, intron 1 of 27)	CpG-13617	21617	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
68213	chr14	76917201	76917400	+	0	NA	Intergenic	Intergenic	-42338	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
200558	chr6	136274251	136275000	+	0	NA	intron (NM_001301038, intron 6 of 12)	intron (NM_001301038, intron 6 of 12)	15221	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
158351	chr22	50459501	50460530	+	0	NA	exon (NM_001365819, exon 26 of 40)	exon (NM_001365819, exon 26 of 40)	15020	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
190439	chr5	179842451	179843100	+	0	NA	intron (NM_001017987, intron 2 of 4).2	AluSx|SINE|Alu	16042	NM_016175	51149		NM_016175	ENSG00000161010	MRNIP	C5orf45	MRN complex interacting protein	protein-coding
46338	chr11	125516001	125516200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-19790	NM_022549	9638		NM_005103	ENSG00000149557	FEZ1	UNC-76	fasciculation and elongation protein zeta 1	protein-coding
78834	chr15	99755671	99756130	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-22456	NM_001284422	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
85252	chr16	48455071	48455430	+	0	NA	Intergenic	AluJo|SINE|Alu	-69837	NM_003031	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
237020	chrX	102627701	102627900	+	0	NA	intron (NR_146584, intron 4 of 18)	L1MCb|LINE|L1	-23566	NM_001099411	9737		NM_014710	ENSG00000198932	GPRASP1	GASP|GASP-1|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding
195767	chr6	40441071	40441230	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	62813	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
129615	chr2	70110421	70110750	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	14731	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
165587	chr3	101590571	101590730	+	0	NA	intron (NM_020357, intron 4 of 4)	AluJo|SINE|Alu	16470	NM_020357	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
174947	chr4	49140551	49141050	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	154158	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
107573	chr18	48836071	48836230	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	106657	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
134174	chr2	134261651	134262100	+	0	NA	intron (NM_001371457, intron 2 of 16)	intron (NM_001371457, intron 2 of 16)	7803	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
28794	chr10	62087021	62087480	+	0	NA	intron (NM_001244638, intron 6 of 6)	AluY|SINE|Alu	37893	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
205916	chr7	25611551	25611650	+	0	NA	intron (NR_157815, intron 3 of 4)	Tigger1|DNA|TcMar-Tigger	51540	NR_157819	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
182050	chr5	55923201	55924300	+	0	NA	TTS (NM_001242638)	TTS (NM_001242638)	70428	NM_001242639	133396		NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R|zcytoR17	interleukin 31 receptor A	protein-coding
129488	chr2	69613821	69614280	+	0	NA	intron (NM_001371577, intron 2 of 14)	MER21C|LTR|ERVL	29688	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
177481	chr4	113899321	113900380	+	0	NA	TTS (NM_024590)	TTS (NM_024590)	79797	NM_001354210	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
74204	chr15	56042821	56044060	+	0	NA	Intergenic	Intergenic	-49828	NM_001329212	4734		NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	NEDD4 E3 ubiquitin protein ligase	protein-coding
53785	chr12	68829901	68830780	+	0	NA	intron (NM_002392, intron 8 of 10)	intron (NM_002392, intron 8 of 10)	21316	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
79261	chr16	481721	481980	+	0	NA	intron (NM_001142272, intron 1 of 11)	AluJb|SINE|Alu	6926	NM_001142272	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
12972	chr1	110893021	110893380	+	0	NA	intron (NM_001040033, intron 4 of 8)	intron (NM_001040033, intron 4 of 8)	20052	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
73115	chr15	41152121	41152500	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-36030	NM_017553	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
223870	chr9	180621	180950	+	0	NA	Intergenic	Intergenic	-1710	NM_001145355	55871		NM_018491	ENSG00000172785	ZNG1A	CBWD1|COBP	Zn regulated GTPase metalloprotein activator 1A	protein-coding
236356	chrX	70444551	70445580	+	0	NA	5' UTR (NM_021120, exon 1 of 19)	5' UTR (NM_021120, exon 1 of 19)	230	NM_021120	1741		NM_020730	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|PPP1R82|SAP102|XLID90|XLMR	discs large MAGUK scaffold protein 3	protein-coding
12301	chr1	100899671	100899830	+	0	NA	intron (NM_133496, intron 2 of 10)	MLT1J|LTR|ERVL-MaLR	3660	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
223345	chr8	143840511	143842140	+	0	NA	promoter-TSS (NM_178564)	promoter-TSS (NM_178564)	-352	NM_178564	340371		NM_178564	ENSG00000185189	NRBP2	TRG16|pp9320	nuclear receptor binding protein 2	protein-coding
238545	chrX	153766051	153766950	+	0	NA	intron (NM_001163257, intron 3 of 36)	(CCTC)n|Simple_repeat|Simple_repeat	2251	NM_005393	5365		NM_005393	ENSG00000198753	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
85434	chr16	50374771	50374930	+	0	NA	Intergenic	Intergenic	-5862	NM_013263	29117		NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4|SMARCI1	bromodomain containing 7	protein-coding
148350	chr20	63834421	63834680	+	0	NA	Intergenic	Intergenic	-3286	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
1026	chr1	1869971	1870530	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluJr4|SINE|Alu	20837	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
221890	chr8	128559321	128559780	+	0	NA	non-coding (NR_121673, exon 4 of 4)	non-coding (NR_121673, exon 4 of 4)	5129	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
134620	chr2	144407501	144407700	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-74531	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
102773	chr17	76292001	76292480	+	0	NA	exon (NM_032134, exon 4 of 19)	exon (NM_032134, exon 4 of 19)	15440	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
234126	chrX	9734671	9735030	+	0	NA	intron (NM_000273, intron 8 of 8)	intron (NM_000273, intron 8 of 8)	30997	NM_000273	4935		NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
45610	chr11	118905351	118905830	+	0	NA	intron (NM_001378214, intron 4 of 8)	AluSq2|SINE|Alu	4952	NM_182557	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
158857	chr3	9837901	9838300	+	0	NA	exon (NM_173659, exon 9 of 9)	exon (NM_173659, exon 9 of 9)	5908	NM_001351736	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
85772	chr16	56930421	56930680	+	0	NA	Intergenic	Intergenic	-1592	NM_001010989	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
97923	chr17	45146671	45149700	+	0	NA	promoter-TSS (NM_006460)	promoter-TSS (NM_006460)	-290	NM_006460	10614		NM_006460	ENSG00000186834	HEXIM1	CLP1|EDG1|HIS1|MAQ1	HEXIM P-TEFb complex subunit 1	protein-coding
14638	chr1	145475421	145476450	+	0	NA	Intergenic	L2a|LINE|L2	-70157	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
97892	chr17	45111321	45111880	+	0	NA	3' UTR (NM_133373, exon 15 of 15)	3' UTR (NM_133373, exon 15 of 15)	2833	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
225684	chr9	36481921	36482330	+	0	NA	Intergenic	AluSp|SINE|Alu	-80927	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
176035	chr4	82367651	82368430	+	0	NA	intron (NM_001003810, intron 1 of 6)	intron (NM_001003810, intron 1 of 6)	5951	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
167929	chr3	136181651	136181750	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSx1|SINE|Alu	12768	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
5900	chr1	26820621	26821480	+	0	NA	Intergenic	Intergenic	-5638	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
218079	chr8	38932971	38933130	+	0	NA	intron (NM_021623, intron 2 of 11)	intron (NM_021623, intron 2 of 11)	31704	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
172699	chr4	2770801	2771300	+	0	NA	Intergenic	HAL1|LINE|L1	-14714	NM_024309	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
227394	chr9	89523851	89524430	+	0	NA	Intergenic	Intergenic	-26027	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
194431	chr6	33116521	33117700	+	0	NA	non-coding (NR_001435, exon 2 of 5)	non-coding (NR_001435, exon 2 of 5)	4594	NR_001435	3116		NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo
126303	chr2	27259001	27259200	+	0	NA	intron (NM_001318950, intron 2 of 8)	intron (NM_001318950, intron 2 of 8)	3947	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
71363	chr14	105484451	105485400	+	0	NA	Intergenic	Intergenic	-1961	NM_001311	1396		NM_001311	ENSG00000213145	CRIP1	CRHP|CRIP|CRP-1|CRP1	cysteine rich protein 1	protein-coding
143839	chr20	32516021	32516280	+	0	NA	intron (NM_001256798, intron 3 of 10)	intron (NM_001256798, intron 3 of 10)	6191	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
43016	chr11	73991451	73992150	+	0	NA	Intergenic	Intergenic	-8598	NM_001381944	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
215981	chr8	8848371	8849750	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	44570	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
182444	chr5	62310051	62310430	+	0	NA	intron (NM_001243952, intron 2 of 20)	AluSz6|SINE|Alu	4034	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
19235	chr1	172637521	172637780	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-21358	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
225783	chr9	37468351	37469250	+	0	NA	Intergenic	(GGCAG)n|Simple_repeat|Simple_repeat	-3350	NM_014872	9925		NM_014872	ENSG00000168795	ZBTB5	-	zinc finger and BTB domain containing 5	protein-coding
111273	chr19	3546371	3546800	+	0	NA	intron (NM_174983, intron 6 of 9)	intron (NM_174983, intron 6 of 9)	7428	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
205662	chr7	22872151	22872450	+	0	NA	Intergenic	Intergenic	15687	NR_003075	692210		NR_003075	ENSG00000221740	SNORD93	HBII-336	small nucleolar RNA, C/D box 93	snoRNA
228708	chr9	109015801	109016530	+	0	NA	3' UTR (NM_032012, exon 18 of 18)	3' UTR (NM_032012, exon 18 of 18)	-2666	NM_003798	8727		NM_003798	ENSG00000119326	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin alpha like 1	protein-coding
73534	chr15	43823251	43823700	+	0	NA	intron (NM_005926, intron 1 of 8)	AluSx1|SINE|Alu	1215	NM_005926	4236		NM_005926	ENSG00000140259	MFAP1	AMP	microfibril associated protein 1	protein-coding
77736	chr15	85729171	85729580	+	0	NA	intron (NM_007200, intron 29 of 36)	L2c|LINE|L2	29350	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
35854	chr11	2368451	2368750	+	0	NA	intron (NR_108080, intron 1 of 2)	intron (NR_108080, intron 1 of 2)	-7577	NM_001297649	975		NM_004356	ENSG00000110651	CD81	CVID6|S5.7|TAPA1|TSPAN28	CD81 molecule	protein-coding
131221	chr2	95157901	95158280	+	0	NA	intron (NM_032788, intron 1 of 4)	intron (NM_032788, intron 1 of 4)	1495	NM_001318005	84874		NM_032788	ENSG00000144026	ZNF514	-	zinc finger protein 514	protein-coding
86180	chr16	57816051	57816730	+	0	NA	non-coding (NR_169553, exon 4 of 4)	non-coding (NR_169553, exon 4 of 4)	5753	NM_001278081	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
27896	chr10	41883071	41884950	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	484035	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
50842	chr12	49121151	49121530	+	0	NA	Intergenic	Intergenic	10055	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
102674	chr17	76101471	76101830	+	0	NA	intron (NM_001145297, intron 3 of 19)	intron (NM_001145297, intron 3 of 19)	1921	NM_001282313	23265		NM_015219	ENSG00000182473	EXOC7	2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|NEDSEBA|YJL085W	exocyst complex component 7	protein-coding
91245	chr17	3956671	3957530	+	0	NA	intron (NM_174953, intron 1 of 22)	intron (NM_174953, intron 1 of 22)	7337	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
119248	chr19	39492771	39493130	+	0	NA	3' UTR (NM_001001563, exon 11 of 11)	3' UTR (NM_001001563, exon 11 of 11)	-5997	NM_016941	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
24570	chr1	244972251	244972350	+	0	NA	intron (NR_026587, intron 1 of 5)	intron (NR_026587, intron 1 of 5)	-1431	NR_111907	101928068		NR_111907		LOC101928068	-	uncharacterized LOC101928068	ncRNA
6554	chr1	28652171	28652580	+	0	NA	Intergenic	AluY|SINE|Alu	3775	NR_004407	26824		NR_004407	ENSG00000274978	RNU11	RNU11-1|U11	RNA, U11 small nuclear	snRNA
96651	chr17	40616701	40616900	+	0	NA	Intergenic	Intergenic	31018	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
169819	chr3	177123901	177124100	+	0	NA	intron (NM_001374330, intron 1 of 14)	intron (NM_001374330, intron 1 of 14)	72478	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
179442	chr4	184409421	184410430	+	0	NA	intron (NM_002199, intron 5 of 8)	intron (NM_002199, intron 5 of 8)	-27619	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
118972	chr19	38866751	38867250	+	0	NA	TTS (NM_198445).2	TTS (NM_198445).2	11275	NM_198445	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
175636	chr4	76279551	76279830	+	0	NA	intron (NM_001242939, intron 6 of 6)	intron (NM_001242939, intron 6 of 6)	-26336	NM_003943	8987		NM_003943	ENSG00000118804	STBD1	GENEX3414|GENX-3414	starch binding domain 1	protein-coding
122518	chr19	49615771	49615930	+	0	NA	exon (NM_020719, exon 9 of 14)	exon (NM_020719, exon 9 of 14)	24293	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
210392	chr7	99916871	99917450	+	0	NA	intron (NM_033017, intron 1 of 6)	L2c|LINE|L2	2370	NM_033091	89122		NM_033017	ENSG00000146833	TRIM4	RNF87	tripartite motif containing 4	protein-coding
140002	chr2	230956671	230958000	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-32093	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
94934	chr17	32011371	32011530	+	0	NA	intron (NM_001321350, intron 1 of 14)	FLAM_C|SINE|Alu	4067	NM_001321350	114659		NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
116778	chr19	18507101	18508380	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	14330	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
210143	chr7	98229421	98229680	+	0	NA	intron (NM_015395, intron 15 of 25)	intron (NM_015395, intron 15 of 25)	18111	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
65713	chr14	52800801	52801450	+	0	NA	Intergenic	AluSx|SINE|Alu	-9518	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
24621	chr1	246571321	246572000	+	0	NA	intron (NM_001139459, intron 1 of 8)	intron (NM_001139459, intron 1 of 8)	5204	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
59276	chr13	24226501	24226700	+	0	NA	intron (NM_001166271, intron 2 of 12)	intron (NM_001166271, intron 2 of 12)	27839	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
137459	chr2	197031971	197032330	+	0	NA	intron (NM_001195144, intron 16 of 27)	intron (NM_001195144, intron 16 of 27)	-105443	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
164400	chr3	58435801	58436000	+	0	NA	Intergenic	Intergenic	-2048	NM_001173468	5162		NM_000925	ENSG00000168291	PDHB	E1beta|PDHBD|PDHE1-B|PDHE1B|PHE1B	pyruvate dehydrogenase E1 subunit beta	protein-coding
207457	chr7	44587971	44588930	+	0	NA	Intergenic	AluJr|SINE|Alu	-6155	NM_001303060	222068		NM_182547	ENSG00000158604	TMED4	ERS25|GMP25iso|HNLF|p24a3|p24alpha3	transmembrane p24 trafficking protein 4	protein-coding
120791	chr19	45448901	45449500	+	0	NA	5' UTR (NM_001369417, exon 2 of 10)	5' UTR (NM_001369417, exon 2 of 10)	1566	NM_001369417	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
111540	chr19	4032101	4033450	+	0	NA	intron (NM_015897, intron 7 of 10)	intron (NM_015897, intron 7 of 10)	25039	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
209909	chr7	92137821	92138280	+	0	NA	intron (NR_122110, intron 1 of 2)	LTR8|LTR|ERV1	-3305	NM_001146152	1595		NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
139907	chr2	230722951	230723950	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	9902	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
201041	chr6	142146251	142146350	+	0	NA	promoter-TSS (NM_016485)	promoter-TSS (NM_016485)	822	NM_001324307	4829		NM_002511	ENSG00000135577	NMBR	BB1|BB1R|BRS1|NMB-R	neuromedin B receptor	protein-coding
56258	chr12	112004371	112004530	+	0	NA	intron (NM_001193453, intron 2 of 9)	AluJr|SINE|Alu	8715	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
15219	chr1	149445521	149445780	+	0	NA	intron (NM_001364012, intron 2 of 4)	intron (NM_001364012, intron 2 of 4)	-30248	NM_001351365	101060226		NM_001351365	ENSG00000271383	NBPF19	-	NBPF member 19	protein-coding
11211	chr1	88862401	88862980	+	0	NA	intron (NM_001514, intron 3 of 6)	AluSg7|SINE|Alu	28877	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
226652	chr9	74777101	74777830	+	0	NA	intron (NM_001177311, intron 23 of 38)	MIR3|SINE|MIR	109882	NM_001177311	140803		NM_017662	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	transient receptor potential cation channel subfamily M member 6	protein-coding
175114	chr4	54683771	54684330	+	0	NA	intron (NM_001385292, intron 1 of 20)	intron (NM_001385292, intron 1 of 20)	26093	NM_001093772	3815		NM_000222	ENSG00000157404	KIT	C-Kit|CD117|MASTC|PBT|SCFR	KIT proto-oncogene, receptor tyrosine kinase	protein-coding
59083	chr13	21053221	21053480	+	0	NA	intron (NM_014572, intron 1 of 7)	intron (NM_014572, intron 1 of 7)	8236	NM_014572	26524		NM_014572	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
44980	chr11	116924551	116925750	+	0	NA	intron (NM_001366687, intron 4 of 4)	AluSz6|SINE|Alu	-87200	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
27351	chr10	30697321	30698380	+	0	NA	intron (NR_036438, intron 3 of 9)	intron (NR_036438, intron 3 of 9)	5576	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
67996	chr14	74953201	74953400	+	0	NA	intron (NM_001207012, intron 2 of 5)	GA-rich|Low_complexity|Low_complexity	2464	NM_001293643	5228		NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
7601	chr1	35198951	35199250	+	0	NA	Intergenic	AluY|SINE|Alu	-5955	NM_005066	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
120460	chr19	44667101	44667300	+	0	NA	Intergenic	Intergenic	-4252	NM_020219	56971		NM_020219	ENSG00000186567	CEACAM19	CEACM19|CEAL1	CEA cell adhesion molecule 19	protein-coding
139657	chr2	226834321	226834580	+	0	NA	intron (NM_001349069, intron 3 of 8)	intron (NM_001349069, intron 3 of 8)	-1604	NM_001167608	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
209659	chr7	77950701	77950900	+	0	NA	intron (NM_001366086, intron 15 of 17)	intron (NM_001366086, intron 15 of 17)	110670	NM_001127359	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
90817	chr17	2265921	2267480	+	0	NA	promoter-TSS (NM_001256827)	promoter-TSS (NM_001256827)	-515	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
38874	chr11	47359351	47359880	+	0	NA	intron (NM_003120, intron 3 of 4)	intron (NM_003120, intron 3 of 4)	-6913	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
226902	chr9	79432651	79432750	+	0	NA	Intergenic	Intergenic	-139073	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
68335	chr14	77599751	77599850	+	0	NA	intron (NM_004863, intron 1 of 11)	intron (NM_004863, intron 1 of 11)	16837	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
89700	chr16	89398151	89398930	+	0	NA	intron (NR_045839, intron 2 of 9)	AluJo|SINE|Alu	-32378	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109002	chr18	79700951	79701250	+	0	NA	intron (NM_001318511, intron 4 of 11)	Tigger1|DNA|TcMar-Tigger	19670	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
90034	chr16	89903801	89904200	+	0	NA	intron (NM_014972, intron 12 of 17)	intron (NM_014972, intron 12 of 17)	-14862	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
141447	chr2	241035201	241038050	+	0	NA	intron (NM_001080437, intron 4 of 31)	CpG	38007	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
156326	chr22	40653121	40653380	+	0	NA	Intergenic	Intergenic	-16531	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
147051	chr20	53664221	53664480	+	0	NA	Intergenic	Intergenic	55996	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
143765	chr20	32397501	32397900	+	0	NA	intron (NM_015338, intron 3 of 11)	MER30|DNA|hAT-Charlie	38635	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
153495	chr22	26481521	26481780	+	0	NA	intron (NR_146311, intron 2 of 13)	intron (NR_146311, intron 2 of 13)	-1969	NM_152841	89781		NM_022081	ENSG00000100099	HPS4	BLOC3S2|LE	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding
113415	chr19	9625471	9626170	+	0	NA	intron (NR_122038, intron 1 of 3)	L1MC4a|LINE|L1	4338	NR_122038	284385		NM_001242812	ENSG00000267106	ZNF561-AS1	C19orf82	ZNF561 antisense RNA 1 (head to head)	ncRNA
170695	chr3	187828771	187829420	+	0	NA	Intergenic	Intergenic	-83627	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
150282	chr21	41880701	41880900	+	0	NA	Intergenic	Intergenic	-1456	NM_001282934	63977		NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
223521	chr8	144107771	144108730	+	0	NA	TTS (NM_032272)	TTS (NM_032272)	511	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
238321	chrX	149525101	149526630	+	0	NA	Intergenic	Intergenic	13887	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
36453	chr11	5691691	5692950	+	0	NA	intron (NM_006074, intron 1 of 7)	L2a|LINE|L2	2530	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
84287	chr16	30078751	30079150	+	0	NA	intron (NM_001303507, intron 2 of 7)	MIR3|SINE|MIR	2956	NM_001303507	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
157050	chr22	42578621	42579200	+	0	NA	intron (NR_002184, intron 2 of 6)	AluSx1|SINE|Alu	3101	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
126009	chr2	25322371	25322530	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	6271	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
25294	chr10	6178851	6178950	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-24032	NM_001363545	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
40080	chr11	62777521	62777780	+	0	NA	intron (NM_006473, intron 3 of 10)	intron (NM_006473, intron 3 of 10)	6254	NM_006473	10629		NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
37256	chr11	14644201	14645580	+	0	NA	exon (NM_000922, exon 1 of 16)	exon (NM_000922, exon 1 of 16)	1086	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
51914	chr12	53681151	53681950	+	0	NA	Intergenic	Intergenic	-5220	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
150913	chr21	44219321	44219580	+	0	NA	Intergenic	Intergenic	21493	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
113688	chr19	10405401	10406080	+	0	NA	Intergenic	Intergenic	-2198	NM_007065	11140		NM_007065	ENSG00000105401	CDC37	P50CDC37	cell division cycle 37, HSP90 cochaperone	protein-coding
167194	chr3	128274171	128274330	+	0	NA	intron (NM_021937, intron 4 of 6)	MIRb|SINE|MIR	-120336	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
110993	chr19	3034951	3036980	+	0	NA	intron (NM_001144761, intron 2 of 19)	intron (NM_001144761, intron 2 of 19)	-6351	NM_001144762	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
218373	chr8	43180121	43180380	+	0	NA	intron (NM_001363229, intron 9 of 16)	SVA_E|Retroposon|SVA	39786	NM_001363228	138050		NM_025070	ENSG00000165102	HGSNAT	HGNAT|MPS3C|RP73|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
88752	chr16	86556421	86556830	+	0	NA	non-coding (NR_026674, exon 1 of 1)	non-coding (NR_026674, exon 1 of 1)	1305	NR_026674	146512		NM_153017	ENSG00000280278	FLJ30679	-	uncharacterized protein FLJ30679	ncRNA
12331	chr1	101025101	101026530	+	0	NA	promoter-TSS (NR_109849)	promoter-TSS (NR_109849)	-9	NM_001077394	51611		NM_015958	ENSG00000117543	DPH5	AD-018|CGI-30|HSPC143|NEDSFF|NPD015	diphthamide biosynthesis 5	protein-coding
13851	chr1	117658321	117659650	+	0	NA	Intergenic	Intergenic	52937	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
4342	chr1	20589501	20589700	+	0	NA	intron (NM_001785, intron 1 of 3)	intron (NM_001785, intron 1 of 3)	503	NM_001785	978		NM_001785	ENSG00000158825	CDA	CDD	cytidine deaminase	protein-coding
85404	chr16	50307571	50307730	+	0	NA	intron (NM_001114, intron 15 of 25)	intron (NM_001114, intron 15 of 25)	15034	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
148050	chr20	63236671	63236830	+	0	NA	intron (NM_139317, intron 1 of 6)	intron (NM_139317, intron 1 of 6)	845	NM_022161	79444		NM_022161	ENSG00000101197	BIRC7	KIAP|LIVIN|ML-IAP|MLIAP|RNF50	baculoviral IAP repeat containing 7	protein-coding
144910	chr20	36953051	36953600	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1617	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
223045	chr8	143371421	143371680	+	0	NA	intron (NM_052924, intron 1 of 14)	intron (NM_052924, intron 1 of 14)	2674	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
236056	chrX	56340951	56341250	+	0	NA	Intergenic	L1PA4|LINE|L1	107942	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
111246	chr19	3522201	3522400	+	0	NA	promoter-TSS (NM_001136197)	promoter-TSS (NM_001136197)	-656	NM_001136197	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
108823	chr18	78985001	78985250	+	0	NA	intron (NM_171999, intron 1 of 2)	intron (NM_171999, intron 1 of 2)	4850	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
124694	chr2	3536751	3537050	+	0	NA	non-coding (NR_148534, exon 9 of 12)	non-coding (NR_148534, exon 9 of 12)	-17369	NM_018269	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
231824	chr9	132578571	132579130	+	0	NA	Intergenic	Intergenic	-3756	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
226161	chr9	63821051	63821580	+	0	NA	Intergenic	L1MC1|LINE|L1	-1661	NR_039688	100616184		NR_039688	ENSG00000276029	MIR4477A	-	microRNA 4477a	ncRNA
74234	chr15	56734421	56734830	+	0	NA	promoter-TSS (NM_001002843)	promoter-TSS (NM_001002843)	-539	NM_001002843	54816		NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
97611	chr17	44127221	44128150	+	0	NA	Intergenic	AluSg|SINE|Alu	-4044	NM_001382393	10014		NM_005474	ENSG00000108840	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
25683	chr10	8444451	8444890	+	0	NA	Intergenic	Intergenic	149721	NR_134492	105376398		NR_134492		LOC105376398	-	uncharacterized LOC105376398	ncRNA
182350	chr5	59342271	59342430	+	0	NA	intron (NM_001364600, intron 3 of 7)	intron (NM_001364600, intron 3 of 7)	14620	NM_001197219	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
187915	chr5	148847571	148847800	+	0	NA	Intergenic	Intergenic	21074	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
103108	chr17	77362851	77363250	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	-10287	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
74452	chr15	59637501	59637700	+	0	NA	TTS (NM_001320930)	TTS (NM_001320930)	19705	NM_001320929	2958		NM_004492	ENSG00000140307	GTF2A2	HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS	general transcription factor IIA subunit 2	protein-coding
48729	chr12	10709671	10710450	+	0	NA	exon (NM_003651, exon 6 of 10)	exon (NM_003651, exon 6 of 10)	13263	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
13158	chr1	111737901	111741250	+	0	NA	promoter-TSS (NR_038951)	promoter-TSS (NR_038951)	-180	NM_019099	55924		NM_019099	ENSG00000197852	INKA2	C1orf183|FAM212B	inka box actin regulator 2	protein-coding
237320	chrX	118420521	118420800	+	0	NA	intron (NM_001184966, intron 11 of 17)	intron (NM_001184966, intron 11 of 17)	34266	NR_031685	100302214		NR_031685	ENSG00000221463	MIR1277	MIRN1277|hsa-mir-1277	microRNA 1277	ncRNA
8688	chr1	42031101	42031540	+	0	NA	intron (NR_038261, intron 1 of 3)	intron (NR_038261, intron 1 of 3)	4614	NR_038261	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
67199	chr14	68922221	68922480	+	0	NA	intron (NM_001130004, intron 2 of 21)	intron (NM_001130004, intron 2 of 21)	56952	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
133896	chr2	130155771	130156650	+	0	NA	intron (NM_017951, intron 13 of 19)	intron (NM_017951, intron 13 of 19)	-11098	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
23270	chr1	227902071	227902700	+	0	NA	Intergenic	Intergenic	39298	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
22964	chr1	226067521	226068000	+	0	NA	intron (NR_002315, intron 3 of 3)	AluSq2|SINE|Alu	5033	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
154911	chr22	37188321	37189200	+	0	NA	promoter-TSS (NM_182486)	promoter-TSS (NM_182486)	-513	NM_182486	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
114991	chr19	14045851	14046200	+	0	NA	intron (NM_004843, intron 6 of 13)	AluSx1|SINE|Alu	11613	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
158051	chr22	49944671	49945880	+	0	NA	Intergenic	Intergenic	-15497	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
78804	chr15	99495571	99496330	+	0	NA	Intergenic	Intergenic	-69467	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
46308	chr11	124950451	124951430	+	0	NA	Intergenic	L2|LINE|L2	-3262	NM_025004	80071		NM_025004	ENSG00000149548	CCDC15	-	coiled-coil domain containing 15	protein-coding
133437	chr2	119364601	119364800	+	0	NA	intron (NM_001322329, intron 1 of 6)	L2a|LINE|L2	2042	NM_001017927	130355		NM_001017927	ENSG00000186132	C2orf76	AIM29	chromosome 2 open reading frame 76	protein-coding
203439	chr7	357751	357850	+	0	NA	Intergenic	Intergenic	-21625	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
193558	chr6	30622471	30622980	+	0	NA	intron (NM_014046, intron 4 of 6).5	intron (NM_014046, intron 4 of 6).5	-4149	NM_024909	79969		NM_024909	ENSG00000137343	ATAT1	C6orf134|MEC17|Nbla00487|TAT|alpha-TAT|alpha-TAT1	alpha tubulin acetyltransferase 1	protein-coding
235905	chrX	53056321	53056580	+	0	NA	intron (NM_018969, intron 1 of 1)	intron (NM_018969, intron 1 of 1)	7661	NM_018969	54328		NM_018969	ENSG00000184194	GPR173	SREB3	G protein-coupled receptor 173	protein-coding
124793	chr2	7450051	7451430	+	0	NA	TTS (NR_038432)	TTS (NR_038432)	29479	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
159747	chr3	16247151	16247800	+	0	NA	Intergenic	Intergenic	17468	NM_001047434	285381		NM_206831	ENSG00000154813	DPH3	DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2	diphthamide biosynthesis 3	protein-coding
89828	chr16	89577321	89578100	+	0	NA	exon (NM_014427, exon 2 of 17)	exon (NM_014427, exon 2 of 17)	1952	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
173321	chr4	7541071	7541230	+	0	NA	intron (NM_020777, intron 3 of 26)	intron (NM_020777, intron 3 of 26)	81122	NR_036238	100422826		NR_036238	ENSG00000266690	MIR4274	-	microRNA 4274	ncRNA
172288	chr4	1563351	1563750	+	0	NA	Intergenic	Intergenic	120441	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
214141	chr7	144349671	144349830	+	0	NA	intron (NR_126022, intron 1 of 3)	L2c|LINE|L2	-5652	NM_005435	7984		NM_005435	ENSG00000050327	ARHGEF5	GEF5|P60|TIM|TIM1	Rho guanine nucleotide exchange factor 5	protein-coding
102746	chr17	76262821	76263330	+	0	NA	Intergenic	Intergenic	-2273	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
199209	chr6	111793551	111794160	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-33938	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
112482	chr19	6417651	6418230	+	0	NA	intron (NM_001366300, intron 10 of 19)	intron (NM_001366300, intron 10 of 19)	-1429	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
64813	chr14	34994771	34995130	+	0	NA	intron (NM_001146282, intron 1 of 14)	(T)n|Simple_repeat|Simple_repeat	11958	NM_003136	6729		NM_003136	ENSG00000100883	SRP54	SCN8	signal recognition particle 54	protein-coding
235655	chrX	48529901	48530100	+	0	NA	Intergenic	AluJb|SINE|Alu	8192	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
89121	chr16	88501871	88502030	+	0	NA	intron (NM_153813, intron 3 of 9)	MIR3|SINE|MIR	29103	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
63663	chr14	21040051	21040430	+	0	NA	intron (NM_001282211, intron 1 of 14)	intron (NM_001282211, intron 1 of 14)	-2122	NM_032572	84659		NM_032572	ENSG00000165799	RNASE7	RAE1	ribonuclease A family member 7	protein-coding
189825	chr5	177071471	177072280	+	0	NA	intron (NM_001308219, intron 4 of 4)	intron (NM_001308219, intron 4 of 4)	-15040	NM_001354984	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
46742	chr11	129024001	129024250	+	0	NA	promoter-TSS (NM_014715)	promoter-TSS (NM_014715)	63	NM_014715	9743		NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
227406	chr9	89537751	89538100	+	0	NA	Intergenic	Intergenic	-39812	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
201525	chr6	149128371	149129850	+	0	NA	Intergenic	(AGAT)n|Simple_repeat|Simple_repeat	-88814	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
194096	chr6	31907271	31907950	+	0	NA	intron (NM_001178063, intron 1 of 13).5	intron (NM_001178063, intron 1 of 13).5	-5524	NM_181842	221527		NM_181842	ENSG00000204366	ZBTB12	Bat9|C6orf46|D6S59E|G10|NG35	zinc finger and BTB domain containing 12	protein-coding
76426	chr15	74790071	74790230	+	0	NA	intron (NM_001354988, intron 1 of 14)	intron (NM_001354988, intron 1 of 14)	-1393	NR_039738	100616183		NR_039738	ENSG00000264386	MIR4513	-	microRNA 4513	ncRNA
229860	chr9	126398371	126399250	+	0	NA	intron (NM_033446, intron 6 of 9)	intron (NM_033446, intron 6 of 9)	11694	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
177594	chr4	120843951	120844050	+	0	NA	intron (NM_001379104, intron 3 of 15)	intron (NM_001379104, intron 3 of 15)	78726	NM_001379106	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
24913	chr10	1059971	1060330	+	0	NA	intron (NM_014023, intron 1 of 13)	intron (NM_014023, intron 1 of 13)	-3446	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
50320	chr12	46664901	46665200	+	0	NA	Intergenic	L3b|LINE|CR1	160947	NM_018018	55089		NM_018018	ENSG00000139209	SLC38A4	ATA3|NAT3|PAAT|SNAT4	solute carrier family 38 member 4	protein-coding
67027	chr14	67583921	67584380	+	0	NA	intron (NM_020715, intron 26 of 28)	intron (NM_020715, intron 26 of 28)	16118	NM_004569	5283		NM_004569	ENSG00000100564	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis class H	protein-coding
77223	chr15	81133951	81134250	+	0	NA	promoter-TSS (NM_001353365)	promoter-TSS (NM_001353365)	-170	NM_001353365	161502		NM_173528	ENSG00000156206	CFAP161	C15orf26	cilia and flagella associated protein 161	protein-coding
156277	chr22	40452521	40453500	+	0	NA	intron (NM_001282661, intron 4 of 13)	intron (NM_001282661, intron 4 of 13)	10430	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
37413	chr11	17278121	17278400	+	0	NA	intron (NM_001352672, intron 1 of 14)	AluSx1|SINE|Alu	1290	NM_001352672	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
63009	chr13	112616921	112617180	+	0	NA	Intergenic	MER4D|LTR|ERV1	-28865	NM_001286279	10426		NM_006322	ENSG00000126216	TUBGCP3	104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex component 3	protein-coding
36216	chr11	3515371	3515930	+	0	NA	intron (NR_126335, intron 1 of 2)	HERVS71-int|LTR|ERV1	-38577	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
113299	chr19	8560471	8560630	+	0	NA	intron (NM_012335, intron 1 of 27)	intron (NM_012335, intron 1 of 27)	16892	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
153219	chr22	23917001	23917530	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-18335	NR_038911	284889		NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA
22328	chr1	214277551	214277850	+	0	NA	Intergenic	Intergenic	-3459	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
218346	chr8	42920471	42920650	+	0	NA	intron (NM_032410, intron 2 of 21)	L2a|LINE|L2	23582	NM_032410	84376		NM_032410	ENSG00000168172	HOOK3	HK3	hook microtubule tethering protein 3	protein-coding
189547	chr5	174045551	174045730	+	0	NA	promoter-TSS (NM_015980)	promoter-TSS (NM_015980)	-66	NM_015980	51617		NM_015980	ENSG00000170091	NSG2	CALY3|HMP19	neuronal vesicle trafficking associated 2	protein-coding
2560	chr1	9764451	9764750	+	0	NA	intron (NM_001302883, intron 2 of 17)	AluSz|SINE|Alu	59365	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
61553	chr13	60463721	60464030	+	0	NA	intron (NM_001146070, intron 4 of 13)	MSTB1|LTR|ERVL-MaLR	66655	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
216555	chr8	21902201	21902550	+	0	NA	Intergenic	Intergenic	11315	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
83587	chr16	28163101	28163380	+	0	NA	intron (NM_001270940, intron 7 of 24)	intron (NM_001270940, intron 7 of 24)	48725	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
86803	chr16	67831571	67832350	+	0	NA	intron (NM_025082, intron 7 of 15)	intron (NM_025082, intron 7 of 15)	-10360	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
72020	chr15	28100371	28100530	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1135	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
544	chr1	1239451	1240400	+	0	NA	Intergenic	Intergenic	6797	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
201847	chr6	150202551	150203050	+	0	NA	intron (NM_030949, intron 1 of 3)	intron (NM_030949, intron 1 of 3)	59756	NM_030949	81706		NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1 regulatory inhibitor subunit 14C	protein-coding
34754	chr11	186871	187250	+	0	NA	Intergenic	MER57-int|LTR|ERV1	-6018	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
131849	chr2	98686521	98686780	+	0	NA	intron (NM_012214, intron 2 of 15)	AluSz|SINE|Alu	-23177	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
194068	chr6	31867721	31867980	+	0	NA	intron (NM_001178045, intron 13 of 20).5	AluSx1|SINE|Alu	-5029	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
43795	chr11	86301151	86301250	+	0	NA	Intergenic	Intergenic	-1040	NM_016401	51501		NM_016401	ENSG00000149196	HIKESHI	C11orf73|HLD13|HSPC138|HSPC179|L7RN6|OPI10	heat shock protein nuclear import factor hikeshi	protein-coding
20013	chr1	185297201	185297400	+	0	NA	3' UTR (NM_006469, exon 15 of 15)	3' UTR (NM_006469, exon 15 of 15)	19943	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
166361	chr3	113000151	113000250	+	0	NA	intron (NM_138485, intron 4 of 4)	AluSx|SINE|Alu	9216	NM_014170	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
49323	chr12	21676471	21677180	+	0	NA	Intergenic	Intergenic	-18970	NM_001315537	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
71945	chr15	23046271	23046430	+	0	NA	Intergenic	Intergenic	-6677	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
7705	chr1	36086151	36086480	+	0	NA	intron (NM_014466, intron 4 of 9)	intron (NM_014466, intron 4 of 9)	2221	NM_014466	27285		NM_014466	ENSG00000092850	TEKT2	TEKTB1|TEKTIN-T|h-tektin-t	tektin 2	protein-coding
205151	chr7	7192871	7193830	+	0	NA	intron (NM_020156, intron 1 of 3)	L1PB1|LINE|L1	10806	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
62864	chr13	110559721	110559980	+	0	NA	intron (NM_017817, intron 1 of 1)	intron (NM_017817, intron 1 of 1)	1872	NM_017817	55647		NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
110670	chr19	2258951	2259050	+	0	NA	Intergenic	L1MB5|LINE|L1	-2583	NM_144616	126306		NM_144616	ENSG00000167476	JSRP1	JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding
165514	chr3	100317721	100318480	+	0	NA	intron (NM_001199198, intron 16 of 18)	L1ME3Cz|LINE|L1	-16657	NM_020202	56954		NM_020202	ENSG00000114021	NIT2	HEL-S-8a	nitrilase family member 2	protein-coding
26311	chr10	15088071	15089180	+	0	NA	intron (NM_001039844, intron 1 of 3)	CpG	151	NR_144471	108949267		NR_144471		ACBD7-DCLRE1CP1	-	ACBD7-DCLRE1CP1 readthrough	ncRNA
95025	chr17	32461351	32462090	+	0	NA	intron (NM_001270482, intron 3 of 12)	intron (NM_001270482, intron 3 of 12)	17210	NM_001270482	5717		NM_002815	ENSG00000108671	PSMD11	Rpn6|S9|p44.5	proteasome 26S subunit, non-ATPase 11	protein-coding
210176	chr7	98513951	98515080	+	0	NA	Intergenic	LTR88a|LTR|Gypsy?	-102770	NM_002523	4885		NM_002523	ENSG00000106236	NPTX2	NARP|NP-II|NP2	neuronal pentraxin 2	protein-coding
82548	chr16	18415841	18415950	+	0	NA	Intergenic	Intergenic	-3918	NR_036143	100422886		NR_036143	ENSG00000257381	MIR3179-2	-	microRNA 3179-2	ncRNA
17645	chr1	157154801	157155350	+	0	NA	Intergenic	Intergenic	-16484	NM_005240	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
49475	chr12	25196721	25197400	+	0	NA	intron (NM_001001660, intron 1 of 2)	AluSc8|SINE|Alu	1823	NM_001001660	144363		NM_001001660	ENSG00000205707	ETFRF1	LYRM5	electron transfer flavoprotein regulatory factor 1	protein-coding
57218	chr12	121513571	121514330	+	0	NA	intron (NM_001005366, intron 9 of 22)	intron (NM_001005366, intron 9 of 22)	66296	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
43760	chr11	86200451	86200550	+	0	NA	Intergenic	Intergenic	-43884	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
190433	chr5	179838321	179838650	+	0	NA	TTS (NM_001142299)	TTS (NM_001142299)	17580	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
38985	chr11	47588671	47588830	+	0	NA	TTS (NM_031909)	TTS (NM_031909)	2072	NM_001164379	399888		NM_001164379	ENSG00000196666	FAM180B	-	family with sequence similarity 180 member B	protein-coding
107579	chr18	48840801	48841000	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	101907	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
237577	chrX	123703751	123703930	+	0	NA	intron (NM_001081550, intron 3 of 38)	AluJb|SINE|Alu	29212	NM_001081550	57187		NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|XLID12|dJ506G2.1|hTREX120	THO complex subunit 2	protein-coding
133868	chr2	128473171	128473730	+	0	NA	Intergenic	Intergenic	-154582	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
147857	chr20	62811621	62812250	+	0	NA	intron (NM_007346, intron 6 of 6)	intron (NM_007346, intron 6 of 6)	-5115	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
13396	chr1	113949151	113949980	+	0	NA	intron (NM_198268, intron 2 of 15)	intron (NM_198268, intron 2 of 15)	-1580	NM_198269	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
84872	chr16	31175551	31175650	+	0	NA	Intergenic	AluSg7|SINE|Alu	-4510	NM_001170634	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
172693	chr4	2760571	2760930	+	0	NA	Intergenic	MER77|LTR|ERVL	-4414	NM_024309	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
75487	chr15	66292371	66292630	+	0	NA	promoter-TSS (NM_133375)	promoter-TSS (NM_133375)	-809	NM_133375	115752		NM_133375	ENSG00000166938	DIS3L	DIS3L1	DIS3 like exosome 3'-5' exoribonuclease	protein-coding
218073	chr8	38924301	38924800	+	0	NA	intron (NM_021623, intron 2 of 11)	LTR16A2|LTR|ERVL	23204	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
167923	chr3	136176121	136176780	+	0	NA	intron (NM_018133, intron 1 of 1)	AluJo|SINE|Alu	18018	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
110124	chr19	1584371	1584930	+	0	NA	exon (NM_001281454, exon 3 of 7)	exon (NM_001281454, exon 3 of 7)	8215	NM_001281454	53615		NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
189792	chr5	176809751	176811700	+	0	NA	5' UTR (NM_133369, exon 1 of 15)	5' UTR (NM_133369, exon 1 of 15)	166	NM_133369	90249		NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
195216	chr6	36131401	36132550	+	0	NA	intron (NM_002754, intron 2 of 11)	MIR|SINE|MIR	1462	NM_002754	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
152915	chr22	22769971	22770680	+	0	NA	Intergenic	Intergenic	-52451	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
157350	chr22	44679821	44680080	+	0	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	2865	NM_001198721	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
166867	chr3	123559101	123559530	+	0	NA	intron (NM_001329784, intron 3 of 8)	intron (NM_001329784, intron 3 of 8)	25302	NM_001329787	201562		NM_198402	ENSG00000206527	HACD2	PTPLB	3-hydroxyacyl-CoA dehydratase 2	protein-coding
112995	chr19	7894951	7895250	+	0	NA	intron (NM_001268284, intron 2 of 3)	intron (NM_001268284, intron 2 of 3)	6590	NM_025061	80131		NM_025061	ENSG00000171017	LRRC8E	-	leucine rich repeat containing 8 VRAC subunit E	protein-coding
143833	chr20	32507951	32508650	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	-1659	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
126309	chr2	27264021	27265750	+	0	NA	intron (NM_001318949, intron 1 of 8)	CpG-15874	-1838	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
41221	chr11	65706351	65707500	+	0	NA	Intergenic	LTR13|LTR|ERVK	-5327	NM_182710	10524		NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|NEDFASB|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
238021	chrX	135086421	135087080	+	0	NA	Intergenic	Intergenic	11962	NM_001348255	644596		NM_001348255	ENSG00000196972	SMIM10L2B	LINC00086|LINC00087|NCRNA00086|NCRNA00087|SMIM10L2A	small integral membrane protein 10 like 2B	protein-coding
45229	chr11	117948821	117949380	+	0	NA	Intergenic	Intergenic	-19647	NM_001206790	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
171410	chr3	196209101	196210030	+	0	NA	intron (NR_135617, intron 2 of 8)	intron (NR_135617, intron 2 of 8)	1835	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
225617	chr9	36208701	36209100	+	0	NA	intron (NM_001184761, intron 4 of 4)	MIRc|SINE|MIR	17979	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
8079	chr1	39025921	39027730	+	0	NA	intron (NM_004552, intron 1 of 2)	L2|LINE|L2	475	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
21344	chr1	204584871	204585400	+	0	NA	Intergenic	Intergenic	68729	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
194172	chr6	32110401	32111100	+	0	NA	Intergenic	Intergenic	-1412	NM_001365276	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
65476	chr14	51861701	51861900	+	0	NA	intron (NM_001243774, intron 1 of 2)	intron (NM_001243774, intron 1 of 2)	1188	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
102779	chr17	76302771	76303630	+	0	NA	intron (NR_130649, intron 3 of 18)	intron (NR_130649, intron 3 of 18)	4480	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
147351	chr20	58308171	58308400	+	0	NA	intron (NR_003505, intron 2 of 16)	intron (NR_003505, intron 2 of 16)	1154	NR_003505	55370		NM_018498		PPP4R1L	C20orf192|PPP4R1P1|PRO1085	protein phosphatase 4 regulatory subunit 1 like (pseudogene)	pseudo
156026	chr22	39955971	39956330	+	0	NA	intron (NM_004810, intron 3 of 7)	intron (NM_004810, intron 3 of 7)	9333	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
64449	chr14	24231691	24233400	+	0	NA	promoter-TSS (NM_006156)	promoter-TSS (NM_006156)	-77	NM_001002000	51292		NM_016576	ENSG00000100938	GMPR2	GMPR 2	guanosine monophosphate reductase 2	protein-coding
232777	chr9	136689101	136689850	+	0	NA	Intergenic	Intergenic	-2018	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
178480	chr4	148444201	148444800	+	0	NA	intron (NM_001354819, intron 1 of 7)	CpG-21555	198	NM_001354819	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
68305	chr14	77303751	77303930	+	0	NA	intron (NM_013382, intron 4 of 20)	L2a|LINE|L2	17043	NM_013382	29954		NM_013382	ENSG00000009830	POMT2	LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2	protein O-mannosyltransferase 2	protein-coding
151854	chr22	18576351	18576850	+	0	NA	Intergenic	Intergenic	-27772	NR_003563	728233		NR_003563	ENSG00000290425	PI4KAP1	-	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudo
88887	chr16	87726271	87726630	+	0	NA	intron (NM_001351937, intron 7 of 11)	CpG	39536	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
42954	chr11	73646051	73646680	+	0	NA	promoter-TSS (NM_021200)	promoter-TSS (NM_021200)	-216	NM_021200	58473		NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding
109302	chr19	567321	567980	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-3633	NM_198591	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
90004	chr16	89880671	89881150	+	0	NA	intron (NM_014972, intron 1 of 17)	intron (NM_014972, intron 1 of 17)	7318	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
89730	chr16	89427971	89428130	+	0	NA	intron (NR_045839, intron 1 of 9)	AluSz|SINE|Alu	-2868	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
155625	chr22	38871101	38873070	+	0	NA	intron (NM_014292, intron 1 of 4)	CpG-19071	131	NM_001303494	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
222927	chr8	142997271	142997630	+	0	NA	non-coding (NR_102426, exon 1 of 1)	non-coding (NR_102426, exon 1 of 1)	1622	NR_102426	100128627		NR_102426		CDC42P3	-	CDC42 pseudogene 3	pseudo
169813	chr3	177105651	177105950	+	0	NA	intron (NM_001374330, intron 1 of 14)	(GT)n|Simple_repeat|Simple_repeat	90678	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
127122	chr2	37654801	37655650	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	16417	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
173545	chr4	10082271	10083000	+	0	NA	intron (NM_017491, intron 10 of 14)	MIR|SINE|MIR	-3943	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
183130	chr5	74865601	74866850	+	0	NA	non-coding (NR_046462, exon 1 of 12)	non-coding (NR_046462, exon 1 of 12)	162	NM_001376054	26049		NM_015566	ENSG00000198780	FAM169A	SLAP|SLAP75	family with sequence similarity 169 member A	protein-coding
40171	chr11	62888921	62889200	+	0	NA	TTS (NM_001013251)	TTS (NM_001013251)	7361	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
172794	chr4	2951351	2952250	+	0	NA	TTS (NR_015453)	TTS (NR_015453)	11606	NM_001291978	8602		NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
39718	chr11	61765821	61766280	+	0	NA	exon (NM_001127392, exon 3 of 27)	exon (NM_001127392, exon 3 of 27)	-8386	NR_026882	26070		NR_026882	ENSG00000124915	MYRF-AS1	DKFZP434K028	MYRF antisense RNA 1	ncRNA
60588	chr13	41958701	41958900	+	0	NA	intron (NM_015058, intron 1 of 44)	intron (NM_015058, intron 1 of 44)	2285	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
81524	chr16	9083451	9083630	+	0	NA	Intergenic	AluSc|SINE|Alu	-8104	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
225789	chr9	37487901	37488100	+	0	NA	intron (NM_001282766, intron 3 of 12)	intron (NM_001282766, intron 3 of 12)	2052	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
60312	chr13	40651801	40652250	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	14616	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
11579	chr1	91545451	91545550	+	0	NA	Intergenic	Intergenic	44392	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
34274	chr10	131899851	131903000	+	0	NA	intron (NR_033191, intron 2 of 9)	CpG-3543	417	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
15571	chr1	150560801	150561700	+	0	NA	TTS (NM_001288607)	TTS (NM_001288607)	9321	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
212145	chr7	116588071	116588530	+	0	NA	intron (NR_165033, intron 2 of 4)	intron (NR_165033, intron 2 of 4)	26357	NR_120506	100996266		NR_120506		COMETT	COMET|LINC01510	cytosolic oncogenic antisense to MET transcript	ncRNA
76648	chr15	75637251	75637630	+	0	NA	Intergenic	MIRb|SINE|MIR	2784	NM_018285	55272		NM_018285	ENSG00000177971	IMP3	BRMS2|C15orf12|MRPS4	IMP U3 small nucleolar ribonucleoprotein 3	protein-coding
201341	chr6	144559551	144560500	+	0	NA	intron (NM_007124, intron 49 of 73)	intron (NM_007124, intron 49 of 73)	-23123	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
111279	chr19	3552601	3553430	+	0	NA	intron (NM_001287529, intron 1 of 9)	intron (NM_001287529, intron 1 of 9)	4569	NM_001287529	126321		NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501|SLC59B1	major facilitator superfamily domain containing 12	protein-coding
146245	chr20	48831521	48832330	+	0	NA	Intergenic	Intergenic	-3926	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
99961	chr17	57456551	57456650	+	0	NA	intron (NM_170721, intron 5 of 9)	AluSg7|SINE|Alu	66997	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
40878	chr11	65114501	65115030	+	0	NA	exon (NM_001277233, exon 6 of 9)	exon (NM_001277233, exon 6 of 9)	2893	NM_003273	7108		NM_003273	ENSG00000149809	TM7SF2	ANG1|C14SR|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
140302	chr2	232442601	232443580	+	0	NA	Intergenic	Intergenic	-13063	NM_001631	248		NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
94904	chr17	31715301	31715500	+	0	NA	Intergenic	AluJo|SINE|Alu	139989	NR_029856	100126356		NR_029856	ENSG00000283978	MIR365B	MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b	microRNA 365b	ncRNA
216632	chr8	22105321	22105580	+	0	NA	TTS (NM_001354250)	TTS (NM_001354250)	3969	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
54990	chr12	96349351	96349750	+	0	NA	intron (NM_002595, intron 1 of 16)	L1MB4|LINE|L1	50889	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
210092	chr7	97064851	97065150	+	0	NA	Intergenic	Intergenic	-40169	NM_005221	1749		NM_005221	ENSG00000105880	DLX5	SHFM1|SHFM1D	distal-less homeobox 5	protein-coding
128416	chr2	55266571	55267330	+	0	NA	intron (NM_001321003, intron 3 of 16)	AluSx|SINE|Alu	2229	NM_001005369	4528		NM_002453	ENSG00000085760	MTIF2	-	mitochondrial translational initiation factor 2	protein-coding
97040	chr17	42319271	42321200	+	0	NA	intron (NM_001369519, intron 21 of 23)	intron (NM_001369519, intron 21 of 23)	32179	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
18551	chr1	162564271	162564500	+	0	NA	intron (NM_001324115, intron 2 of 10)	intron (NM_001324115, intron 2 of 10)	2486	NM_001324114	6675		NM_003115	ENSG00000117143	UAP1	AGX|AGX1|AGX2|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
107546	chr18	48776301	48776500	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	105800	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
49093	chr12	14514351	14514450	+	0	NA	intron (NM_024829, intron 6 of 10)	intron (NM_024829, intron 6 of 10)	-53332	NR_120465	101928290		NR_120465	ENSG00000256751	PLBD1-AS1	-	PLBD1 antisense RNA 1	ncRNA
15620	chr1	150621021	150621980	+	0	NA	TTS (NM_004436)	TTS (NM_004436)	7633	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
209653	chr7	77903621	77903880	+	0	NA	intron (NM_001366086, intron 5 of 17)	MIRb|SINE|MIR	63620	NM_001127359	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
180856	chr5	32596601	32596830	+	0	NA	intron (NM_006713, intron 3 of 4)	L1ME2|LINE|L1	11158	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
95395	chr17	35915471	35915630	+	0	NA	Intergenic	Intergenic	-4527	NR_126038	100533789		NR_126038		LRRC37A8P	-	leucine rich repeat containing 37 member A8, pseudogene	pseudo
173827	chr4	18459451	18459550	+	0	NA	Intergenic	Intergenic	-437625	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
54965	chr12	96262121	96262380	+	0	NA	intron (NM_005230, intron 4 of 4)	AluSz6|SINE|Alu	6752	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
210149	chr7	98241171	98241980	+	0	NA	intron (NM_015395, intron 6 of 25)	intron (NM_015395, intron 6 of 25)	10657	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
175187	chr4	56436901	56438180	+	0	NA	intron (NM_006452, intron 2 of 9)	AluSc5|SINE|Alu	1280	NM_001079525	10606		NM_006452	ENSG00000128050	PAICS	ADE2|ADE2H1|AIRC|PAICSD|PAIS	phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase	protein-coding
121486	chr19	47127951	47128250	+	0	NA	Intergenic	AluJr|SINE|Alu	-2735	NM_001145713	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
166438	chr3	113844671	113844900	+	0	NA	intron (NM_017577, intron 2 of 17)	intron (NM_017577, intron 2 of 17)	5997	NM_017577	54762		NM_017577	ENSG00000178075	GRAMD1C	-	GRAM domain containing 1C	protein-coding
137453	chr2	196988821	196989080	+	0	NA	non-coding (NR_160034, exon 29 of 29)	non-coding (NR_160034, exon 29 of 29)	-62243	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
7469	chr1	33099201	33100050	+	0	NA	intron (NM_001376724, intron 8 of 9)	intron (NM_001376724, intron 8 of 9)	17447	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
149775	chr21	34834951	34835550	+	0	NA	intron (NM_001754, intron 6 of 8)	intron (NM_001754, intron 6 of 8)	53449	NM_001122607	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
235532	chrX	47228601	47229130	+	0	NA	3' UTR (NM_001170460, exon 16 of 16)	3' UTR (NM_001170460, exon 16 of 16)	-4144	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
13026	chr1	111206801	111207200	+	0	NA	Intergenic	Intergenic	-2462	NM_001271833	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
209903	chr7	92057821	92058400	+	0	NA	5' UTR (NM_001379277, exon 1 of 29)	5' UTR (NM_001379277, exon 1 of 29)	532	NM_001379277	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
127297	chr2	38748801	38752150	+	0	NA	intron (NM_001031684, intron 1 of 7)	CpG	886	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
77706	chr15	85687451	85688050	+	0	NA	intron (NM_007200, intron 16 of 36)	intron (NM_007200, intron 16 of 36)	67800	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
197190	chr6	63581871	63582030	+	0	NA	non-coding (NR_169593, exon 6 of 6)	non-coding (NR_169593, exon 6 of 6)	9470	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
73504	chr15	43763451	43763750	+	0	NA	intron (NM_005313, intron 5 of 12)	intron (NM_005313, intron 5 of 12)	13366	NM_025165	80237		NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
95360	chr17	35864021	35864280	+	0	NA	intron (NM_152781, intron 6 of 14).2	intron (NM_152781, intron 6 of 14).2	4741	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
230478	chr9	128220171	128220880	+	0	NA	intron (NM_001374269, intron 6 of 21)	intron (NM_001374269, intron 6 of 21)	-16303	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
92243	chr17	7914101	7914300	+	0	NA	non-coding (NR_152444, exon 2 of 2)	non-coding (NR_152444, exon 2 of 2)	2089	NM_001358699	284023		NM_001358699	ENSG00000179859	RNF227	LINC02581	ring finger protein 227	protein-coding
68456	chr14	85476251	85476350	+	0	NA	Intergenic	AluYe5|SINE|Alu	-53725	NR_144387	23768		NM_013231	ENSG00000185070	FLRT2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
87481	chr16	71776051	71776350	+	0	NA	intron (NM_001128, intron 2 of 22)	intron (NM_001128, intron 2 of 22)	-17713	NR_003059	692111		NR_003059	ENSG00000223224	SNORD71	HBII-239|MIRN768|hsa-mir-768	small nucleolar RNA, C/D box 71	snoRNA
19205	chr1	172431551	172432300	+	0	NA	intron (NM_139240, intron 1 of 6)	L1PA6|LINE|L1	11240	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
50090	chr12	44841371	44841930	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	34011	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
131876	chr2	98719471	98719630	+	0	NA	intron (NM_012214, intron 2 of 15)	L1M4b|LINE|L1	11582	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
147678	chr20	62307201	62307400	+	0	NA	intron (NM_175573, intron 5 of 9)	intron (NM_175573, intron 5 of 9)	4303	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
67397	chr14	69790601	69790800	+	0	NA	intron (NM_003049, intron 1 of 4)	L1ME3C|LINE|L1	6541	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
35565	chr11	1668901	1669400	+	0	NA	Intergenic	LTR52|LTR|ERVL	3551	NR_026643	387742		NM_001014374	ENSG00000205866	FAM99A	-	family with sequence similarity 99 member A	ncRNA
194404	chr6	33014651	33015200	+	0	NA	Intergenic	Intergenic	-5334	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
126003	chr2	25311151	25311750	+	0	NA	intron (NR_135490, intron 2 of 23)	intron (NR_135490, intron 2 of 23)	17271	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
209754	chr7	87207601	87208000	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	11932	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
227094	chr9	85725921	85726230	+	0	NA	intron (NM_001330701, intron 1 of 25)	AluSx|SINE|Alu	15879	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
22098	chr1	211606401	211607450	+	0	NA	Intergenic	Intergenic	-27764	NM_021194	7779		NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
220888	chr8	104588701	104589980	+	0	NA	promoter-TSS (NM_013437)	promoter-TSS (NM_013437)	-316	NM_013437	29967		NM_013437	ENSG00000147650	LRP12	ALS28|MIG13A|ST7	LDL receptor related protein 12	protein-coding
72365	chr15	31352151	31352600	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	25540	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
110999	chr19	3041201	3041600	+	0	NA	intron (NM_001144761, intron 2 of 19)	intron (NM_001144761, intron 2 of 19)	6235	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
150919	chr21	44235051	44235350	+	0	NA	intron (NM_015259, intron 4 of 6)	intron (NM_015259, intron 4 of 6)	5743	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
5903	chr1	26825401	26825630	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-1173	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
53144	chr12	57864851	57865650	+	0	NA	Intergenic	CpG	-18521	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
122242	chr19	49016321	49016580	+	0	NA	TTS (NM_006666)	TTS (NM_006666)	641	NM_000894	3972		NM_000894	ENSG00000104826	LHB	CGB4|HH23|LSH-B|LSH-beta	luteinizing hormone subunit beta	protein-coding
108241	chr18	63214371	63214950	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	105109	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
234740	chrX	21989471	21989780	+	0	NA	intron (NM_004595, intron 9 of 10)	LTR45C|LTR|ERV1	-42700	NM_001282754	5251		NM_000444	ENSG00000102174	PHEX	HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH	phosphate regulating endopeptidase X-linked	protein-coding
218379	chr8	43241451	43241550	+	0	NA	Intergenic	SAR|Satellite|Satellite	-50942	NM_001002920	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
37849	chr11	33716201	33716500	+	0	NA	intron (NM_203329, intron 4 of 4)	intron (NM_203329, intron 4 of 4)	6377	NM_001127225	966		NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
80425	chr16	2633271	2633630	+	0	NA	Intergenic	Intergenic	-5532	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
176335	chr4	88228551	88229080	+	0	NA	intron (NM_001348985, intron 1 of 16)	LTR12|LTR|ERV1	2811	NM_001348985	9429		NM_004827	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|CDw388|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1	ATP binding cassette subfamily G member 2 (JR blood group)	protein-coding
50065	chr12	44788721	44789180	+	0	NA	intron (NM_001145108, intron 3 of 19)	L1PBa|LINE|L1	86711	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
148444	chr20	63979201	63980500	+	0	NA	promoter-TSS (NM_080621)	promoter-TSS (NM_080621)	-208	NM_080621	140700		NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
86071	chr16	57607021	57607480	+	0	NA	Intergenic	Intergenic	-12488	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
35590	chr11	1747951	1748050	+	0	NA	exon (NM_001170820, exon 2 of 3)	exon (NM_001170820, exon 2 of 3)	2595	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
217225	chr8	26536771	26536930	+	0	NA	intron (NM_001197293, intron 1 of 13)	intron (NM_001197293, intron 1 of 13)	22819	NM_001197293	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
23750	chr1	232632071	232632230	+	0	NA	Intergenic	Intergenic	-1654	NM_001377488	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
100775	chr17	63997671	63999180	+	0	NA	promoter-TSS (NM_001191031)	promoter-TSS (NM_001191031)	74	NM_001164257	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
14608	chr1	145286021	145286300	+	0	NA	Intergenic	AluSz|SINE|Alu	5044	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
901	chr1	1680301	1680830	+	0	NA	intron (NM_001110781, intron 1 of 8)	intron (NM_001110781, intron 1 of 8)	12230	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
72390	chr15	31378101	31379350	+	0	NA	TTS (NM_015995)	TTS (NM_015995)	51890	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
196706	chr6	44932351	44933650	+	0	NA	intron (NM_001350327, intron 8 of 9)	intron (NM_001350327, intron 8 of 9)	264770	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
80373	chr16	2529351	2529450	+	0	NA	TTS (NM_001048212)	TTS (NM_001048212)	2008	NM_001048212	752014		NM_001048212	ENSG00000205923	CEMP1	CP-23|CP23	cementum protein 1	protein-coding
159592	chr3	15100821	15101250	+	0	NA	Intergenic	Intergenic	-1878	NR_126155	64145		NM_022340	ENSG00000131381	RBSN	Rabenosyn-5|ZFYVE20	rabenosyn, RAB effector	protein-coding
119512	chr19	40526551	40526850	+	0	NA	intron (NM_020971, intron 17 of 35)	AluJo|SINE|Alu	-3791	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
203849	chr7	1450751	1451400	+	0	NA	intron (NM_182924, intron 1 of 16)	intron (NM_182924, intron 1 of 16)	8395	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
133847	chr2	128275751	128276050	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	42968	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
19929	chr1	184491491	184493100	+	0	NA	intron (NM_030806, intron 2 of 5)	intron (NM_030806, intron 2 of 5)	105266	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
89974	chr16	89826621	89826980	+	0	NA	Intergenic	Intergenic	-1675	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
90192	chr17	408501	408700	+	0	NA	intron (NR_136407, intron 2 of 2)	AluSx1|SINE|Alu	-1725	NM_001013672	400566		NM_001013672	ENSG00000187624	LIAT1	C17orf97|CK20	ligand of ATE1	protein-coding
158287	chr22	50356451	50356750	+	0	NA	intron (NM_001351641, intron 1 of 23)	L1MEg|LINE|L1	13273	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
162374	chr3	47989901	47990290	+	0	NA	intron (NM_001385692, intron 2 of 4)	intron (NM_001385692, intron 2 of 4)	26321	NM_001385692	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
107742	chr18	50283501	50283930	+	0	NA	exon (NM_014593, exon 11 of 15)	exon (NM_014593, exon 11 of 15)	-1941	NM_001323954	4152		NM_002384	ENSG00000141644	MBD1	CXXC3|PCM1|RFT	methyl-CpG binding domain protein 1	protein-coding
84362	chr16	30224801	30225600	+	0	NA	exon (NM_001355401, exon 8 of 11)	exon (NM_001355401, exon 8 of 11)	-18273	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
106152	chr18	9771401	9771700	+	0	NA	intron (NM_006868, intron 1 of 6)	intron (NM_006868, intron 1 of 6)	63249	NM_006868	11031		NM_006868	ENSG00000168461	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding
111297	chr19	3584601	3584800	+	0	NA	promoter-TSS (NM_133261)	promoter-TSS (NM_133261)	-778	NM_133261	126326		NM_133261	ENSG00000179855	GIPC3	C19orf64|DFNB15|DFNB72|DFNB95	GIPC PDZ domain containing family member 3	protein-coding
151217	chr21	45226471	45227120	+	0	NA	TTS (NR_027672)	TTS (NR_027672)	-7545	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
193921	chr6	31638671	31638830	+	0	NA	TTS (NM_001199698)	TTS (NM_001199698)	4963	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
77502	chr15	84645101	84645300	+	0	NA	intron (NR_130946, intron 7 of 7)	intron (NR_130946, intron 7 of 7)	9046	NR_130944	84942		NM_032856	ENSG00000177082	WDR73	GAMOS|GAMOS1|HSPC264	WD repeat domain 73	protein-coding
210238	chr7	99375901	99377450	+	0	NA	intron (NM_005720, intron 1 of 9)	AluSx1|SINE|Alu	1945	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
144789	chr20	36636771	36637150	+	0	NA	intron (NM_175077, intron 2 of 7)	intron (NM_175077, intron 2 of 7)	9236	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
235736	chrX	48933951	48934050	+	0	NA	intron (NM_001136157, intron 5 of 8)	intron (NM_001136157, intron 5 of 8)	-14976	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
208401	chr7	66695401	66695800	+	0	NA	intron (NM_001367745, intron 1 of 7)	L2c|LINE|L2	13434	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
222402	chr8	134282371	134282830	+	0	NA	Intergenic	Intergenic	-315471	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
129159	chr2	67384271	67384430	+	0	NA	Intergenic	MER63C|DNA|hAT-Blackjack	-12983	NM_019002	54465		NM_019002	ENSG00000143971	ETAA1	ETAA16	ETAA1 activator of ATR kinase	protein-coding
62374	chr13	99237821	99238800	+	0	NA	intron (NR_026644, intron 1 of 8)	intron (NR_026644, intron 1 of 8)	20118	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
44394	chr11	103070221	103070930	+	0	NA	intron (NM_001318741, intron 3 of 6)	L1MDa|LINE|L1	21585	NM_032299	84259		NM_032299	ENSG00000137692	DCUN1D5	DCNL5|SCCRO5	defective in cullin neddylation 1 domain containing 5	protein-coding
93550	chr17	19067371	19067530	+	0	NA	Intergenic	Intergenic	-3314	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
117486	chr19	19802771	19803480	+	0	NA	intron (NM_001145404, intron 2 of 2)	L1M3a|LINE|L1	18625	NM_001099269	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
100466	chr17	61409201	61409980	+	0	NA	TTS (NM_005994)	TTS (NM_005994)	-2161	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
194047	chr6	31847771	31848130	+	0	NA	Intergenic	Intergenic	10874	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
57142	chr12	121236771	121237430	+	0	NA	TTS (NM_001270486)	TTS (NM_001270486)	26971	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
211094	chr7	102496621	102497830	+	0	NA	intron (NM_001367767, intron 8 of 20)	intron (NM_001367767, intron 8 of 20)	-18303	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
186022	chr5	133997701	133997980	+	0	NA	intron (NM_003374, intron 1 of 8)	AluSp|SINE|Alu	6928	NR_036624								
201868	chr6	150634821	150635150	+	0	NA	intron (NR_138140, intron 1 of 2)	intron (NR_138140, intron 1 of 2)	2021	NR_138140	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
56005	chr12	110307171	110307780	+	0	NA	intron (NM_170665, intron 5 of 19)	AluJb|SINE|Alu	26228	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
33355	chr10	117165851	117166380	+	0	NA	intron (NR_121650, intron 1 of 1)	intron (NR_121650, intron 1 of 1)	1659	NR_037436	100500893		NR_037436	ENSG00000266782	MIR3663	-	microRNA 3663	ncRNA
20196	chr1	193106621	193106880	+	0	NA	promoter-TSS (NM_016066)	promoter-TSS (NM_016066)	-636	NM_016066	51022		NM_016066	ENSG00000023572	GLRX2	CGI-133|GRX2	glutaredoxin 2	protein-coding
32835	chr10	110022901	110023450	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-14794	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
144617	chr20	35841301	35841500	+	0	NA	intron (NM_016436, intron 2 of 17)	intron (NM_016436, intron 2 of 17)	69385	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
182307	chr5	58467151	58467250	+	0	NA	Intergenic	Intergenic	-7061	NM_001252226	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
31803	chr10	98443021	98443280	+	0	NA	exon (NM_001322481, exon 3 of 18)	exon (NM_001322481, exon 3 of 18)	-3171	NR_134454	101927278		NR_134451	ENSG00000287261	HPS1-AS1	-	HPS1 antisense RNA 1	ncRNA
1623	chr1	3722201	3722400	+	0	NA	intron (NM_001204185, intron 5 of 12)	intron (NM_001204185, intron 5 of 12)	24254	NM_001204192	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
189568	chr5	175477021	175477280	+	0	NA	Intergenic	AluJb|SINE|Alu	-1410	NM_001322978	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
62	chr1	274721	275300	+	0	NA	Intergenic	Intergenic	-68413	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
69139	chr14	92546171	92546830	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	-29734	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
102797	chr17	76387871	76388730	+	0	NA	TTS (NM_182965)	TTS (NM_182965)	3022	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
232799	chr9	136708671	136708830	+	0	NA	Intergenic	AluY|SINE|Alu	-3822	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
25644	chr10	8242301	8242900	+	0	NA	Intergenic	Intergenic	25705	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
15737	chr1	151069971	151071880	+	0	NA	5' UTR (NM_001323907, exon 1 of 8)	5' UTR (NM_001323907, exon 1 of 8)	164	NM_001323912	126626		NM_144618	ENSG00000143458	GABPB2	GABPB-2	GA binding protein transcription factor subunit beta 2	protein-coding
113026	chr19	7932501	7932700	+	0	NA	intron (NM_006351, intron 9 of 12)	intron (NM_006351, intron 9 of 12)	-6465	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
148007	chr20	63047971	63048130	+	0	NA	intron (NR_033369, intron 1 of 5)	MER77|LTR|ERVL	10039	NR_033369	100144597		NR_033369	ENSG00000237119	LINC01056	-	long intergenic non-protein coding RNA 1056	ncRNA
75039	chr15	64150271	64150700	+	0	NA	Intergenic	Intergenic	-1246	NR_073534	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
71031	chr14	104777871	104778430	+	0	NA	intron (NM_001382433, intron 5 of 15)	intron (NM_001382433, intron 5 of 15)	15451	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
215265	chr7	157003851	157004500	+	0	NA	TTS (NM_001165255)	TTS (NM_001165255)	-2132	NR_147077	105375606		NR_147077	ENSG00000235029	MNX1-AS2	-	MNX1 antisense RNA 2	ncRNA
81216	chr16	4511551	4512180	+	0	NA	3' UTR (NM_013399, exon 6 of 6)	3' UTR (NM_013399, exon 6 of 6)	16007	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
221225	chr8	121334251	121334430	+	0	NA	Intergenic	L1HS|LINE|L1	-305006	NR_002835	594842		NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
196502	chr6	43666101	43666530	+	0	NA	intron (NM_152732, intron 4 of 4)	intron (NM_152732, intron 4 of 4)	21279	NM_152732	221421		NM_152732	ENSG00000172426	RSPH9	C6orf206|CILD12|MRPS18AL1	radial spoke head component 9	protein-coding
149466	chr21	31717721	31718280	+	0	NA	intron (NM_001145444, intron 1 of 18)	AluSp|SINE|Alu	14118	NM_001145445	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
159796	chr3	16326671	16327030	+	0	NA	exon (NM_015150, exon 8 of 10)	exon (NM_015150, exon 8 of 10)	61638	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
119716	chr19	41179251	41179350	+	0	NA	Intergenic	AluY|SINE|Alu	-13919	NM_030622	29785		NM_030622	ENSG00000167600	CYP2S1	CYPIIS1	cytochrome P450 family 2 subfamily S member 1	protein-coding
98418	chr17	46634851	46635500	+	0	NA	intron (NR_033799, intron 4 of 6).2	Tigger13a|DNA|TcMar-Tigger	44441	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
2221	chr1	8848001	8848200	+	0	NA	Intergenic	Intergenic	18490	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
53830	chr12	69388321	69388600	+	0	NA	intron (NM_001300950, intron 4 of 4)	MIRb|SINE|MIR	28717	NM_006530	8089		NM_006530	ENSG00000127337	YEATS4	4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9	YEATS domain containing 4	protein-coding
52350	chr12	55143301	55143580	+	0	NA	Intergenic	Intergenic	13671	NM_001005243	441639		NM_001005243	ENSG00000170605	OR9K2	OR12-2	olfactory receptor family 9 subfamily K member 2	protein-coding
194229	chr6	32254571	32255530	+	0	NA	promoter-TSS (NR_136244).6	promoter-TSS (NR_136244).6	-123	NR_136245	101929163		NM_001013681	ENSG00000225914	TSBP1-AS1	-	TSBP1 and BTNL2 antisense RNA 1	ncRNA
201896	chr6	151040951	151041050	+	0	NA	intron (NM_015440, intron 26 of 27)	intron (NM_015440, intron 26 of 27)	33992	NM_001350490	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
189596	chr5	175658751	175659330	+	0	NA	intron (NM_001131055, intron 1 of 2)	intron (NM_001131055, intron 1 of 2)	969	NM_001367711	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
218397	chr8	47237551	47237850	+	0	NA	Intergenic	Intergenic	-23178	NM_001352957	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
181260	chr5	39224301	39224500	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	-4837	NM_001349333	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
20358	chr1	197914221	197914800	+	0	NA	intron (NM_001014434, intron 1 of 5)	intron (NM_001014434, intron 1 of 5)	2005	NM_001014434	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
147800	chr20	62646521	62647180	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	4347	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
110977	chr19	2974371	2974880	+	0	NA	Intergenic	Intergenic	-2939	NM_001143986	79816		NM_024760	ENSG00000104953	TLE6	GRG6|OZEMA15|PREMBL	TLE family member 6, subcortical maternal complex member	protein-coding
105184	chr17	82291151	82291450	+	0	NA	non-coding (NR_135639, exon 2 of 2)	non-coding (NR_135639, exon 2 of 2)	1514	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
165963	chr3	107927421	107928180	+	0	NA	intron (NR_015394, intron 2 of 2)	CpG	44595	NR_015394	285205		NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
231108	chr9	129810671	129811180	+	0	NA	non-coding (NR_133948, exon 5 of 5)	non-coding (NR_133948, exon 5 of 5)	7741	NM_001317894	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
151030	chr21	44534001	44534450	+	0	NA	intron (NM_144991, intron 2 of 11)	intron (NM_144991, intron 2 of 11)	5970	NM_198691	386677		NM_198691	ENSG00000215455	KRTAP10-1	KAP10.1|KAP18-1|KAP18.1|KRTAP10.1|KRTAP18-1|KRTAP18.1	keratin associated protein 10-1	protein-coding
96064	chr17	39592051	39592780	+	0	NA	Intergenic	Intergenic	15505	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
190843	chr6	1609421	1610000	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-205	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
103824	chr17	79151471	79151630	+	0	NA	intron (NM_001350453, intron 3 of 13)	intron (NM_001350453, intron 3 of 13)	76726	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
141031	chr2	238197401	238197600	+	0	NA	intron (NM_030768, intron 1 of 11)	intron (NM_030768, intron 1 of 11)	6195	NM_030768	80895		NM_030768	ENSG00000132323	ILKAP	ILKAP2|ILKAP3|PP2C-DELTA|PP2CD|PPM1O	ILK associated serine/threonine phosphatase	protein-coding
230795	chr9	129006501	129007250	+	0	NA	TTS (NM_001287046)	TTS (NM_001287046)	21456	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
157801	chr22	46790771	46792830	+	0	NA	intron (NM_001284305, intron 1 of 12)	AluSx|SINE|Alu	17873	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
97117	chr17	42523021	42523280	+	0	NA	TTS (NM_001378542)	TTS (NM_001378542)	8962	NR_049808	100847046		NR_049808	ENSG00000283929	MIR5010	mir-5010	microRNA 5010	ncRNA
192070	chr6	16651571	16652700	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	108049	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
70050	chr14	100121101	100121300	+	0	NA	intron (NM_016337, intron 3 of 13)	intron (NM_016337, intron 3 of 13)	11545	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
149498	chr21	32562501	32563080	+	0	NA	TTS (NR_146639)	TTS (NR_146639)	22733	NM_144659	140290		NM_018277	ENSG00000242220	TCP10L	C21orf77|LINC00846|PRED77|TCP10A-1|TCP10A-2	t-complex 10 like	protein-coding
159768	chr3	16299051	16299380	+	0	NA	intron (NM_001352980, intron 7 of 9)	intron (NM_001352980, intron 7 of 9)	34003	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
186944	chr5	139647971	139649400	+	0	NA	promoter-TSS (NM_001317200)	promoter-TSS (NM_001317200)	-266	NM_001317204	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
184805	chr5	111237201	111237930	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	13181	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
235113	chrX	40646721	40648100	+	0	NA	TTS (NM_004229)	TTS (NM_004229)	151	NM_144970	159013		NM_144970	ENSG00000185753	CXorf38	-	chromosome X open reading frame 38	protein-coding
33406	chr10	118459601	118459830	+	0	NA	Intergenic	Intergenic	102607	NR_108045	100506126		NR_108045	ENSG00000232139	LINC00867	-	long intergenic non-protein coding RNA 867	ncRNA
141304	chr2	240439901	240440500	+	0	NA	intron (NM_002081, intron 1 of 8)	intron (NM_002081, intron 1 of 8)	4537	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
29281	chr10	69215321	69215850	+	0	NA	non-coding (NR_120648, exon 5 of 5)	non-coding (NR_120648, exon 5 of 5)	-4747	NM_025130	80201		NM_025130	ENSG00000156510	HKDC1	RP92	hexokinase domain containing 1	protein-coding
111122	chr19	3227301	3227780	+	0	NA	intron (NR_033342, intron 1 of 12)	intron (NR_033342, intron 1 of 12)	2262	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
184661	chr5	107670071	107670490	+	0	NA	intron (NM_001962, intron 1 of 4)	CpG	657	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
61082	chr13	48400701	48401230	+	0	NA	intron (NM_000321, intron 17 of 26)	intron (NM_000321, intron 17 of 26)	12148	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
8544	chr1	41044301	41044500	+	0	NA	TTS (NR_037868)	TTS (NR_037868)	-22645	NM_001168247	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
133525	chr2	120222751	120225050	+	0	NA	promoter-TSS (NM_024121)	promoter-TSS (NM_024121)	-500	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
128325	chr2	54669451	54669750	+	0	NA	3' UTR (NM_003128, exon 36 of 36)	3' UTR (NM_003128, exon 36 of 36)	-55412	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
11320	chr1	89408671	89408830	+	0	NA	intron (NR_003133, intron 1 of 4)	(CCTTCT)n|Simple_repeat|Simple_repeat	1071	NR_003133	400759		NR_003133	ENSG00000290525	GBP1P1	LIMIT	guanylate binding protein 1 pseudogene 1	pseudo
125162	chr2	10036001	10036680	+	0	NA	Intergenic	Intergenic	7061	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
91695	chr17	6427501	6428330	+	0	NA	intron (NM_001033054, intron 2 of 4)	AluSx|SINE|Alu	7206	NM_001033054	23746		NM_014336	ENSG00000129221	AIPL1	AIPL2|LCA4	aryl hydrocarbon receptor interacting protein like 1	protein-coding
222174	chr8	132978271	132978430	+	0	NA	intron (NM_003235, intron 34 of 47)	MSTB|LTR|ERVL-MaLR	68231	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
89627	chr16	89319821	89320680	+	0	NA	promoter-TSS (NR_168302)	promoter-TSS (NR_168302)	-202	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
79015	chr16	51701	51900	+	0	NA	intron (NM_016310, intron 1 of 2)	AluY|SINE|Alu	1808	NM_016310	51728		NM_016310	ENSG00000161980	POLR3K	C11|C11-RNP3|HLD21|My010|RPC10|RPC11|RPC12.5	RNA polymerase III subunit K	protein-coding
45905	chr11	120344201	120345080	+	0	NA	intron (NM_015313, intron 1 of 40)	intron (NM_015313, intron 1 of 40)	8227	NM_015313	23365		NM_015313	ENSG00000196914	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor 12	protein-coding
5465	chr1	25630751	25631130	+	0	NA	intron (NM_020379, intron 1 of 11)	L1PB3|LINE|L1	14149	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
187103	chr5	140359371	140359530	+	0	NA	promoter-TSS (NM_001258426)	promoter-TSS (NM_001258426)	-744	NM_001258427	83697		NM_031467	ENSG00000113073	SLC4A9	AE4	solute carrier family 4 member 9	protein-coding
3188	chr1	13723871	13724230	+	0	NA	intron (NM_001135610, intron 2 of 7)	intron (NM_001135610, intron 2 of 7)	19195	NM_012231	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
157665	chr22	46265201	46265400	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-1957	NM_006071	10343		NM_006071	ENSG00000130943	PKDREJ	-	polycystin family receptor for egg jelly	protein-coding
161721	chr3	43994801	43995430	+	0	NA	Intergenic	CpG	-119097	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA
91660	chr17	5516051	5516500	+	0	NA	intron (NM_014922, intron 14 of 15)	L3|LINE|CR1	-15269	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
119133	chr19	39370951	39371250	+	0	NA	intron (NM_001384588, intron 5 of 13)	intron (NM_001384588, intron 5 of 13)	20006	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
74950	chr15	63793851	63794250	+	0	NA	intron (NM_003922, intron 1 of 77)	MER41A|LTR|ERV1	39898	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
100498	chr17	61975401	61975800	+	0	NA	intron (NM_005121, intron 16 of 29)	AluSz6|SINE|Alu	-47618	NM_001351695	57508		NM_020748	ENSG00000108506	INTS2	INT2|KIAA1287	integrator complex subunit 2	protein-coding
131439	chr2	96310051	96310750	+	0	NA	Intergenic	L1MB7|LINE|L1	-4854	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
201437	chr6	147227101	147227300	+	0	NA	intron (NM_139244, intron 2 of 25)	intron (NM_139244, intron 2 of 25)	-22586	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
65115	chr14	44896601	44897930	+	0	NA	promoter-TSS (NM_001017923)	promoter-TSS (NM_001017923)	-10	NM_001017923	122525		NM_001017923	ENSG00000179476	C14orf28	DRIP-1|DRIP1|c14_5270	chromosome 14 open reading frame 28	protein-coding
7884	chr1	36463671	36465280	+	0	NA	promoter-TSS (NM_031280)	promoter-TSS (NM_031280)	-91	NM_031280	64960		NM_031280	ENSG00000116898	MRPS15	DC37|MPR-S15|RPMS15|S15mt|uS15m	mitochondrial ribosomal protein S15	protein-coding
39386	chr11	60175851	60176150	+	0	NA	intron (NM_001247999, intron 5 of 6)	intron (NM_001247999, intron 5 of 6)	7331	NM_022349	64231		NM_022349	ENSG00000110077	MS4A6A	4SPAN3|4SPAN3.2|CD20L3|CDA01|MS4A6|MST090|MSTP090	membrane spanning 4-domains A6A	protein-coding
127279	chr2	38725771	38727230	+	0	NA	intron (NM_138801, intron 4 of 6)	AluYa5|SINE|Alu	24861	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
150852	chr21	44074201	44074700	+	0	NA	exon (NM_003274, exon 8 of 23)	exon (NM_003274, exon 8 of 23)	126	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
5732	chr1	26423171	26423550	+	0	NA	intron (NM_024674, intron 2 of 3)	intron (NM_024674, intron 2 of 3)	-8922	NM_001319959	79947		NM_024887	ENSG00000117682	DHDDS	CIT|CPT|DEDSM|DS|HDS|RP59|hCIT	dehydrodolichyl diphosphate synthase subunit	protein-coding
222620	chr8	141072721	141073750	+	0	NA	Intergenic	Intergenic	-55354	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
31071	chr10	89002521	89002800	+	0	NA	intron (NR_135314, intron 1 of 8)	MIRb|SINE|MIR	-9685	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
35079	chr11	618051	618930	+	0	NA	intron (NM_031264, intron 12 of 13).2	intron (NM_031264, intron 12 of 13).2	-2540	NM_004029	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
49116	chr12	14776501	14777230	+	0	NA	non-coding (NR_027716, exon 2 of 2)	non-coding (NR_027716, exon 2 of 2)	2460	NM_177925	55766		NM_018267	ENSG00000246705	H2AJ	H2AFJ	H2A.J histone	protein-coding
58530	chr12	132222401	132223050	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-16697	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
122126	chr19	48822271	48822630	+	0	NA	intron (NM_016246, intron 5 of 8)	intron (NM_016246, intron 5 of 8)	-11421	NM_001190	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
34046	chr10	124736601	124737200	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	7478	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
180580	chr5	14861471	14861630	+	0	NA	intron (NM_054027, intron 1 of 11)	intron (NM_054027, intron 1 of 11)	10228	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
202088	chr6	154343971	154344130	+	0	NA	intron (NM_001130700, intron 1 of 11)	LTR9B|LTR|ERV1	12716	NM_001130700	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
80863	chr16	3569451	3569750	+	0	NA	intron (NR_075083, intron 1 of 20)	AluSz|SINE|Alu	7803	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
199424	chr6	116695051	116695730	+	0	NA	intron (NM_001366306, intron 4 of 13)	intron (NM_001366306, intron 4 of 13)	14179	NM_001366305	3841		NM_002269	ENSG00000196911	KPNA5	IPOA6|SRP6	karyopherin subunit alpha 5	protein-coding
82306	chr16	15649621	15651800	+	0	NA	intron (NM_017668, intron 1 of 8)	intron (NM_017668, intron 1 of 8)	465	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
5310	chr1	25225551	25226130	+	0	NA	intron (NM_015484, intron 5 of 6)	AluSg|SINE|Alu	6662	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
69906	chr14	99504021	99504280	+	0	NA	3' UTR (NM_001144995, exon 6 of 6)	3' UTR (NM_001144995, exon 6 of 6)	22741	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
171829	chr4	678871	680100	+	0	NA	intron (NM_002477, intron 3 of 6)	intron (NM_002477, intron 3 of 6)	1563	NM_002477	4636		NM_002477	ENSG00000215375	MYL5	MYLC2	myosin light chain 5	protein-coding
50579	chr12	48334851	48335050	+	0	NA	3' UTR (NM_001365804, exon 6 of 6)	3' UTR (NM_001365804, exon 6 of 6)	5970	NM_181788	341567		NM_181788	ENSG00000187166	H1-7	H1.7|H1FNT|H1T2	H1.7 linker histone	protein-coding
180669	chr5	18744301	18745500	+	0	NA	Intergenic	Intergenic	937626	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
40924	chr11	65218551	65218850	+	0	NA	intron (NR_033396, intron 3 of 9)	intron (NR_033396, intron 3 of 9)	4860	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
115709	chr19	16214421	16214680	+	0	NA	intron (NM_001130524, intron 6 of 12)	AluSx1|SINE|Alu	16639	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
219364	chr8	70367371	70367630	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	35890	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
72875	chr15	40285671	40286050	+	0	NA	Intergenic	Intergenic	-3274	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
218891	chr8	60653201	60654180	+	0	NA	Intergenic	L2|LINE|L2	-25050	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
216389	chr8	17926121	17926950	+	0	NA	intron (NR_148032, intron 2 of 38)	intron (NR_148032, intron 2 of 38)	3547	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
12639	chr1	109215771	109215930	+	0	NA	non-coding (NR_034072, exon 2 of 2)	non-coding (NR_034072, exon 2 of 2)	1932	NM_006513	6301		NM_006513	ENSG00000031698	SARS1	NEDMAS|SARS|SERRS|SERS	seryl-tRNA synthetase 1	protein-coding
30946	chr10	87635721	87636030	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-24003	NM_004670	9060		NM_004670	ENSG00000198682	PAPSS2	ATPSK2|BCYM4|SK2	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding
209115	chr7	74963171	74963330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1455	NM_001145064	729438		NM_001145064	ENSG00000274070	CASTOR2	GATSL1|GATSL2	cytosolic arginine sensor for mTORC1 subunit 2	protein-coding
18237	chr1	161044371	161045300	+	0	NA	intron (NM_207005, intron 1 of 10)	intron (NM_207005, intron 1 of 10)	149	NM_001276373	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
143443	chr20	30292221	30292880	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-6013	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
225910	chr9	40111301	40112200	+	0	NA	Intergenic	GSATII|Satellite|centr	-211821	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
87790	chr16	75455271	75455430	+	0	NA	intron (NM_001304998, intron 1 of 2)	AluYf1|SINE|Alu	9093	NM_001304997	124491		NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
137188	chr2	191141401	191142000	+	0	NA	intron (NM_003151, intron 3 of 23)	AluSg|SINE|Alu	9294	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
97319	chr17	43250001	43250480	+	0	NA	Intergenic	Intergenic	1779	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
95870	chr17	38850451	38850900	+	0	NA	TTS (NR_145761)	TTS (NR_145761)	983	NR_145761	109617002		NR_145761	ENSG00000252699	SNORA21B	-	small nucleolar RNA, H/ACA box 21B	snoRNA
125078	chr2	9679201	9679400	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-48303	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
54492	chr12	92078121	92078380	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	63463	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
65534	chr14	51918871	51919030	+	0	NA	promoter-TSS (NR_126331)	promoter-TSS (NR_126331)	-379	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
213938	chr7	142646501	142646700	+	0	NA	intron (NM_001363538, intron 10 of 11)	MLT1O|LTR|ERVL-MaLR	-19699	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
136531	chr2	177263271	177264200	+	0	NA	5' UTR (NM_001145412, exon 1 of 5)	5' UTR (NM_001145412, exon 1 of 5)	396	NM_001313900	4780		NM_006164	ENSG00000116044	NFE2L2	HEBP1|IMDDHH|NRF2|Nrf-2	NFE2 like bZIP transcription factor 2	protein-coding
21383	chr1	205226951	205227050	+	0	NA	promoter-TSS (NM_014858)	promoter-TSS (NM_014858)	-946	NM_014858	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
190221	chr5	178236621	178237130	+	0	NA	TTS (NM_173465)	TTS (NM_173465)	-4053	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
204923	chr7	6166621	6166880	+	0	NA	intron (NM_004227, intron 9 of 12)	intron (NM_004227, intron 9 of 12)	5387	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
14807	chr1	146272121	146272380	+	0	NA	Intergenic	Intergenic	-25523	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
44024	chr11	95068501	95069000	+	0	NA	non-coding (NR_103726, exon 2 of 2)	non-coding (NR_103726, exon 2 of 2)	1873	NR_103726	10929		NM_032102	ENSG00000263465	SRSF8	DSM-1|SFRS2B|SRP46	serine and arginine rich splicing factor 8	protein-coding
7354	chr1	32772921	32773930	+	0	NA	3' UTR (NM_001198973, exon 5 of 5)	3' UTR (NM_001198973, exon 5 of 5)	7798	NM_001198972	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
87765	chr16	75266071	75266680	+	0	NA	promoter-TSS (NM_001170720).2	promoter-TSS (NM_001170720).2	-368	NM_001170720	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
136816	chr2	181900151	181900250	+	0	NA	intron (NR_109843, intron 6 of 17)	intron (NR_109843, intron 6 of 17)	8470	NM_006751	6744		NM_006751	ENSG00000138434	ITPRID2	CS-1|CS1|KRAP|SPAG13|SSFA2	ITPR interacting domain containing 2	protein-coding
157307	chr22	44493021	44493780	+	0	NA	3' UTR (NM_032287, exon 2 of 2)	3' UTR (NM_032287, exon 2 of 2)	4833	NM_032287	84247		NM_032287	ENSG00000188636	RTL6	LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2	retrotransposon Gag like 6	protein-coding
203876	chr7	1475521	1476080	+	0	NA	intron (NM_001080453, intron 39 of 47)	CpG	-16330	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
234518	chrX	19549951	19550050	+	0	NA	exon (NM_001024666, exon 13 of 17)	exon (NM_001024666, exon 13 of 17)	-34739	NM_001001671	389840		NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
96998	chr17	42284501	42285100	+	0	NA	Intergenic	Intergenic	-2747	NM_003152	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
110808	chr19	2469401	2470050	+	0	NA	Intergenic	L2a|LINE|L2	-6402	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
11090	chr1	85284501	85284700	+	0	NA	Intergenic	MER52A|LTR|ERV1	-7968	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
127246	chr2	38685201	38685600	+	0	NA	intron (NM_138801, intron 3 of 6)	intron (NM_138801, intron 3 of 6)	19286	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
125934	chr2	25165771	25166500	+	0	NA	intron (NM_001035256, intron 1 of 3)	intron (NM_001035256, intron 1 of 3)	2445	NM_000939	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
99802	chr17	51332471	51332650	+	0	NA	intron (NR_110751, intron 3 of 5)	L1P1|LINE|L1	2602	NR_110751	101927274		NR_110751	ENSG00000249383	LINC02071	-	long intergenic non-protein coding RNA 2071	ncRNA
196935	chr6	52419701	52420830	+	0	NA	promoter-TSS (NR_033327)	promoter-TSS (NR_033327)	-77	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
36524	chr11	6478501	6479180	+	0	NA	exon (NM_001370409, exon 5 of 8)	exon (NM_001370409, exon 5 of 8)	2491	NM_001376564	23647		NM_012402	ENSG00000132254	ARFIP2	POR1	ADP ribosylation factor interacting protein 2	protein-coding
82937	chr16	21843621	21843880	+	0	NA	exon (NM_130464, exon 4 of 12)	exon (NM_130464, exon 4 of 12)	13907	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
73713	chr15	45133901	45134100	+	0	NA	intron (NM_175940, intron 3 of 33)	intron (NM_175940, intron 3 of 33)	4006	NM_017434	53905		NM_017434	ENSG00000137857	DUOX1	LNOX1|NOXEF1|THOX1	dual oxidase 1	protein-coding
109781	chr19	1141621	1142350	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	-9764	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
40368	chr11	63988551	63988850	+	0	NA	exon (NM_017670, exon 3 of 7)	exon (NM_017670, exon 3 of 7)	2847	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
182801	chr5	68875251	68875750	+	0	NA	Intergenic	Intergenic	154427	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
53183	chr12	59636801	59637250	+	0	NA	intron (NM_001270622, intron 1 of 5)	intron (NM_001270622, intron 1 of 5)	40996	NM_001270622	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
216083	chr8	10887271	10887500	+	0	NA	Intergenic	Intergenic	47359	NR_125432	101929229		NR_125432		PINX1-DT	-	PINX1 divergent transcript	ncRNA
26619	chr10	22340221	22341630	+	0	NA	Intergenic	CpG	-4520	NM_001253855	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
148834	chr21	8394901	8395300	+	0	NA	promoter-TSS (NR_146147).3	promoter-TSS (NR_146147).3	-506	NR_145821	106632260		NR_145821	ENSG00000278189	RNA5-8SN1	RNA5-8S4	RNA, 5.8S ribosomal N1	rRNA
88688	chr16	85778921	85779210	+	0	NA	3' UTR (NM_001142288, exon 4 of 4)	3' UTR (NM_001142288, exon 4 of 4)	-13350	NR_135193	101928557		NR_135193	ENSG00000270159	LOC101928557	-	uncharacterized LOC101928557	ncRNA
11065	chr1	85091571	85092130	+	0	NA	intron (NM_145172, intron 8 of 22)	intron (NM_145172, intron 8 of 22)	29523	NM_145172	126820		NM_145172	ENSG00000162643	DNAI3	DIC3|NYD-SP29|WDR63	dynein axonemal intermediate chain 3	protein-coding
115631	chr19	16096171	16096680	+	0	NA	3' UTR (NM_001367837, exon 8 of 8)	3' UTR (NM_001367837, exon 8 of 8)	-15464	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
235360	chrX	44872371	44874200	+	0	NA	promoter-TSS (NM_001291415)	promoter-TSS (NM_001291415)	97	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
176470	chr4	89338571	89338730	+	0	NA	Intergenic	Intergenic	-30850	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
69337	chr14	93939171	93940330	+	0	NA	intron (NM_016150, intron 5 of 7)	CpG-7577	8552	NR_039728	100616140		NR_039728	ENSG00000265768	MIR4506	-	microRNA 4506	ncRNA
5709	chr1	26380251	26380350	+	0	NA	Intergenic	Intergenic	-7506	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
98850	chr17	48451751	48452050	+	0	NA	intron (NR_110804, intron 2 of 5)	MIR3|SINE|MIR	7067	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
213074	chr7	131084121	131084700	+	0	NA	intron (NR_109852, intron 2 of 5)	THE1C|LTR|ERVL-MaLR	22620	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
107597	chr18	48909451	48910150	+	0	NA	Intergenic	L1ME3A|LINE|L1	33007	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
9494	chr1	51240351	51240450	+	0	NA	intron (NM_014372, intron 1 of 2)	L2a|LINE|L2	4127	NM_014372	26994		NM_014372	ENSG00000123091	RNF11	CGI-123|SID1669	ring finger protein 11	protein-coding
237599	chrX	123961301	123962130	+	0	NA	promoter-TSS (NM_006603)	promoter-TSS (NM_006603)	9	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
29806	chr10	72300101	72300530	+	0	NA	Intergenic	AluSx1|SINE|Alu	26391	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
42230	chr11	68051771	68051930	+	0	NA	TTS (NM_006019)	TTS (NM_006019)	7056	NR_106811	102465451		NR_106811	ENSG00000275022	MIR6753	hsa-mir-6753	microRNA 6753	ncRNA
128541	chr2	60818101	60818600	+	0	NA	Intergenic	Intergenic	62082	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
133341	chr2	113915221	113915480	+	0	NA	intron (NR_102318, intron 2 of 10)	MLT1B|LTR|ERVL-MaLR	-24358	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
102542	chr17	75831871	75833450	+	0	NA	intron (NM_199242, intron 25 of 31)	L3|LINE|CR1	11744	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
113277	chr19	8527351	8528450	+	0	NA	intron (NM_012335, intron 21 of 27)	AluJo|SINE|Alu	-13733	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
107411	chr18	46173321	46175450	+	0	NA	intron (NM_145055, intron 1 of 4)	CpG	351	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
230822	chr9	129049851	129050150	+	0	NA	intron (NR_138422, intron 6 of 13)	intron (NR_138422, intron 6 of 13)	13066	NM_032809	84895		NM_032809	ENSG00000148343	MIGA2	C9orf54|FAM73B	mitoguardin 2	protein-coding
83249	chr16	23880871	23881130	+	0	NA	intron (NM_212535, intron 2 of 16)	L1M5|LINE|L1	45017	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
156299	chr22	40524501	40524700	+	0	NA	intron (NR_109965, intron 3 of 3)	intron (NR_109965, intron 3 of 3)	2800	NR_109965	101927257		NR_109965	ENSG00000232564	MRTFA-AS1	-	MRTFA antisense RNA 1	ncRNA
140781	chr2	235651151	235651250	+	0	NA	intron (NM_001037131, intron 1 of 17)	AluSz|SINE|Alu	-133279	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
116219	chr19	17514671	17515030	+	0	NA	intron (NM_012088, intron 1 of 4)	AluSp|SINE|Alu	-2961	NR_147835	100507551		NR_147835	ENSG00000269439	PGLS-DT	-	PGLS divergent transcript	ncRNA
150780	chr21	43815951	43817400	+	0	NA	Intergenic	Intergenic	-4108	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
2130	chr1	8317801	8318680	+	0	NA	intron (NM_001379618, intron 1 of 6)	CpG	126	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
104322	chr17	80949801	80950200	+	0	NA	intron (NM_020761, intron 28 of 33)	intron (NM_020761, intron 28 of 33)	21213	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
47033	chr12	420751	420850	+	0	NA	intron (NM_032358, intron 5 of 12)	intron (NM_032358, intron 5 of 12)	19156	NM_032358	84318		NM_032358	ENSG00000120647	CCDC77	-	coiled-coil domain containing 77	protein-coding
147214	chr20	57386151	57386450	+	0	NA	intron (NR_149006, intron 1 of 1)	intron (NR_149006, intron 1 of 1)	-5096	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
38059	chr11	35177021	35178150	+	0	NA	intron (NM_001001392, intron 2 of 3)	intron (NM_001001392, intron 2 of 3)	14635	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
182665	chr5	67217851	67218150	+	0	NA	Intergenic	L2|LINE|L2	-21201	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
82455	chr16	16384571	16384950	+	0	NA	intron (NR_146336, intron 29 of 34)	intron (NR_146336, intron 29 of 34)	5515	NM_001282507	101059938		NM_001282507	ENSG00000214967	NPIPA7	NPIPA8	nuclear pore complex interacting protein family member A7	protein-coding
16694	chr1	155206471	155207800	+	0	NA	intron (NM_007112, intron 1 of 22)	intron (NM_007112, intron 1 of 22)	762	NM_001252608	7059		NM_007112	ENSG00000169231	THBS3	TSP3	thrombospondin 3	protein-coding
40677	chr11	64759921	64761650	+	0	NA	promoter-TSS (NM_005609)	promoter-TSS (NM_005609)	-70	NM_001164716	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
166848	chr3	123201351	123203000	+	0	NA	intron (NM_012430, intron 1 of 6)	CpG	232	NM_012430	26984		NM_012430	ENSG00000121542	SEC22A	SEC22L2	SEC22 homolog A, vesicle trafficking protein	protein-coding
152103	chr22	19884321	19884580	+	0	NA	intron (NR_147957, intron 10 of 16)	intron (NR_147957, intron 10 of 16)	-29576	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
76847	chr15	77659851	77659950	+	0	NA	promoter-TSS (NR_120361)	promoter-TSS (NR_120361)	-151	NR_120361	101929478		NR_120361	ENSG00000259281	LINGO1-AS2	-	LINGO1 antisense RNA 2	ncRNA
53728	chr12	68628751	68629430	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluJb|SINE|Alu	-1715	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
46546	chr11	128476561	128477680	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	45190	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
92284	chr17	8076821	8077180	+	0	NA	exon (NM_001139, exon 9 of 15)	exon (NM_001139, exon 9 of 15)	10716	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
9004	chr1	44717771	44717930	+	0	NA	intron (NM_001145636, intron 6 of 11)	intron (NM_001145636, intron 6 of 11)	4051	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
211406	chr7	105034971	105035530	+	0	NA	intron (NM_182931, intron 1 of 26)	AluY|SINE|Alu	21045	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
106017	chr18	8050851	8051350	+	0	NA	intron (NM_001378146, intron 3 of 29)	intron (NM_001378146, intron 3 of 29)	104225	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
236019	chrX	55002971	55003130	+	0	NA	exon (NM_014481, exon 4 of 6)	exon (NM_014481, exon 4 of 6)	2687	NM_014481	27301		NM_014481	ENSG00000169188	APEX2	APE2|APEXL2|XTH2|ZGRF2	apurinic/apyrimidinic endodeoxyribonuclease 2	protein-coding
114193	chr19	11416771	11416930	+	0	NA	exon (NM_001035223, exon 3 of 19)	exon (NM_001035223, exon 3 of 19)	2464	NM_001161616	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
154113	chr22	31102251	31102800	+	0	NA	intron (NR_168475, intron 20 of 20)	intron (NR_168475, intron 20 of 20)	5043	NM_080430	140606		NM_080430	ENSG00000198832	SELENOM	SELM|SEPM	selenoprotein M	protein-coding
16408	chr1	154463171	154464180	+	0	NA	intron (NM_001382772, intron 9 of 9)	intron (NM_001382772, intron 9 of 9)	-38544	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
9481	chr1	50981921	50982180	+	0	NA	Intergenic	Intergenic	11805	NM_078626	1031		NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	cyclin dependent kinase inhibitor 2C	protein-coding
142365	chr20	3781071	3782580	+	0	NA	promoter-TSS (NM_015417)	promoter-TSS (NM_015417)	-377	NM_015417	25876		NM_015417	ENSG00000101222	SPEF1	C20orf28|CLAMP|SPEF1A	sperm flagellar 1	protein-coding
9366	chr1	47227501	47227930	+	0	NA	intron (NM_003189, intron 3 of 5)	intron (NM_003189, intron 3 of 5)	4000	NM_001287347	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
224741	chr9	21801271	21801430	+	0	NA	Intergenic	Intergenic	-1286	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
103079	chr17	77320871	77321230	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	1535	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
233077	chr9	137097721	137098550	+	0	NA	intron (NM_016219, intron 5 of 12)	intron (NM_016219, intron 5 of 12)	11150	NR_045721	11253		NM_016219	ENSG00000177239	MAN1B1	ERMAN1|ERManI|MANA-ER|MRT15	mannosidase alpha class 1B member 1	protein-coding
29266	chr10	69149701	69149900	+	0	NA	intron (NM_001318944, intron 3 of 9)	AluSz|SINE|Alu	25622	NM_001318944	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
16160	chr1	153732171	153732680	+	0	NA	intron (NM_001324475, intron 2 of 30).2	intron (NM_001324475, intron 2 of 30).2	4375	NM_023015	65123		NM_023015	ENSG00000143624	INTS3	C1orf193|C1orf60|INT3|SOSS-A|SOSSA	integrator complex subunit 3	protein-coding
99591	chr17	50530751	50531050	+	0	NA	intron (NM_032133, intron 18 of 18)	intron (NM_032133, intron 18 of 18)	-1835	NM_017957	55040		NM_017957	ENSG00000049283	EPN3	-	epsin 3	protein-coding
68275	chr14	77068121	77068780	+	0	NA	TTS (NR_110553)	TTS (NR_110553)	7741	NR_110553	102724190		NR_110553	ENSG00000258819	LINC02289	-	long intergenic non-protein coding RNA 2289	ncRNA
140063	chr2	231410301	231410800	+	0	NA	Intergenic	Intergenic	14840	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
226963	chr9	79955301	79955500	+	0	NA	intron (NR_121213, intron 1 of 2)	THE1B-int|LTR|ERVL-MaLR	-19623	NR_121212	101927477		NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
41893	chr11	67257321	67257730	+	0	NA	non-coding (NR_027473, exon 21 of 21)	non-coding (NR_027473, exon 21 of 21)	-8948	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
159925	chr3	17004301	17004500	+	0	NA	intron (NM_015184, intron 1 of 5)	intron (NM_015184, intron 1 of 5)	71204	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
188065	chr5	150056001	150056400	+	0	NA	intron (NR_164679, intron 16 of 19)	intron (NR_164679, intron 16 of 19)	30354	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
158235	chr22	50283701	50283900	+	0	NA	intron (NM_001376885, intron 14 of 36)	CpG-19349	-13420	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
161858	chr3	45830621	45830700	+	0	NA	intron (NM_001276379, intron 8 of 9)	intron (NM_001276379, intron 8 of 9)	11459	NR_075080	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
41922	chr11	67288101	67288600	+	0	NA	promoter-TSS (NM_001347901)	promoter-TSS (NM_001347901)	-953	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
33880	chr10	124447501	124448450	+	0	NA	exon (NM_001146340, exon 2 of 2)	exon (NM_001146340, exon 2 of 2)	2060	NM_001146340	390010		NM_001146340	ENSG00000229544	NKX1-2	C10orf121|NKX-1.1|bB238F13.2	NK1 homeobox 2	protein-coding
16195	chr1	153809401	153809600	+	0	NA	3' UTR (NM_020699, exon 11 of 11)	3' UTR (NM_020699, exon 11 of 11)	15553	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
227827	chr9	93450901	93452700	+	0	NA	promoter-TSS (NR_136238)	promoter-TSS (NR_136238)	104	NM_001286723	23196		NM_014612	ENSG00000048828	FAM120A	C9orf10|HBVPTPAP|OSSA	family with sequence similarity 120 member A	protein-coding
168746	chr3	151169751	151170380	+	0	NA	intron (NM_053002, intron 10 of 42)	intron (NM_053002, intron 10 of 42)	33151	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
42431	chr11	69166671	69166900	+	0	NA	intron (NR_104161, intron 2 of 2)	intron (NR_104161, intron 2 of 2)	4777	NR_104161	338694		NR_104161	ENSG00000261070	LOC338694	-	uncharacterized LOC338694	ncRNA
1332	chr1	2446701	2446900	+	0	NA	Intergenic	Intergenic	-20651	NM_001303012	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
34304	chr10	131981221	131982830	+	0	NA	promoter-TSS (NM_004052)	promoter-TSS (NM_004052)	-12	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
7649	chr1	35593221	35593930	+	0	NA	intron (NM_178548, intron 6 of 6)	intron (NM_178548, intron 6 of 6)	20261	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
17830	chr1	159902551	159902850	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2535	NM_012337	25790		NM_012337	ENSG00000213085	CFAP45	CCDC19|HTX11|NESG1	cilia and flagella associated protein 45	protein-coding
136283	chr2	174719021	174719280	+	0	NA	promoter-TSS (NR_002315)	promoter-TSS (NR_002315)	-650	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
99262	chr17	49735621	49736230	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	-27961	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
144438	chr20	35485401	35486200	+	0	NA	intron (NM_007186, intron 20 of 34)	AluJb|SINE|Alu	25817	NM_001318219	11190		NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1|CRDHL2	centrosomal protein 250	protein-coding
76917	chr15	78045971	78046130	+	0	NA	intron (NM_144572, intron 2 of 12)	AluSq2|SINE|Alu	31602	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
73173	chr15	41487371	41488380	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5999	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
39361	chr11	59562971	59563130	+	0	NA	Intergenic	AluSx|SINE|Alu	32108	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
136912	chr2	189662501	189663330	+	0	NA	intron (NM_001353497, intron 1 of 4)	AluJb|SINE|Alu	1456	NM_019048	54529		NM_019048	ENSG00000138381	ASNSD1	NBLA00058|NS3TP1	asparagine synthetase domain containing 1	protein-coding
59336	chr13	24540951	24541050	+	0	NA	non-coding (NR_158454, exon 2 of 3)	non-coding (NR_158454, exon 2 of 3)	720	NR_158455	105370295		NR_158453	ENSG00000287376	LOC105370295	-	uncharacterized LOC105370295	ncRNA
109063	chr18	79901621	79901880	+	0	NA	TTS (NM_025078)	TTS (NM_025078)	38082	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
82044	chr16	12455271	12455530	+	0	NA	intron (NM_032167, intron 18 of 20)	intron (NM_032167, intron 18 of 20)	-264921	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
203972	chr7	1579511	1580400	+	0	NA	intron (NR_027328, intron 3 of 3)	(TCTCTC)n|Simple_repeat|Simple_repeat	9882	NR_027329	114796		NR_021487	ENSG00000230487	PSMG3-AS1	-	PSMG3 antisense RNA 1 (head to head)	ncRNA
216761	chr8	22483871	22484030	+	0	NA	intron (NM_005605, intron 3 of 13)	AluJr4|SINE|Alu	42872	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
8028	chr1	38045021	38045550	+	0	NA	3' UTR (NM_002699, exon 1 of 1)	3' UTR (NM_002699, exon 1 of 1)	1508	NM_002699	5453		NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
206214	chr7	28410951	28411550	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	-1268	NM_182898	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
184536	chr5	102298151	102298250	+	0	NA	Intergenic	AluJb|SINE|Alu	-1916	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
216490	chr8	20195001	20195230	+	0	NA	Intergenic	L2a|LINE|L2	-2266	NM_001693	526		NM_001693	ENSG00000147416	ATP6V1B2	ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2	ATPase H+ transporting V1 subunit B2	protein-coding
133274	chr2	113507271	113507430	+	0	NA	Intergenic	Intergenic	8266	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
28693	chr10	60789401	60790150	+	0	NA	intron (NM_001320918, intron 5 of 7)	L1MA5|LINE|L1	11297	NM_001786	983		NM_001786	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin dependent kinase 1	protein-coding
157815	chr22	47047951	47048450	+	0	NA	intron (NM_001284305, intron 11 of 12)	intron (NM_001284305, intron 11 of 12)	-132158	NR_122047	642757		NR_122047	ENSG00000280080	TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
117895	chr19	32703301	32703500	+	0	NA	intron (NM_001105570, intron 1 of 2)	AluSp|SINE|Alu	11439	NM_001105570	390916		NM_001105570	ENSG00000213965	NUDT19	RP2	nudix hydrolase 19	protein-coding
82552	chr16	18558671	18559450	+	0	NA	intron (NM_173614, intron 1 of 30).2	AluJo|SINE|Alu	3052	NM_173614	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
184811	chr5	111245751	111246050	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	21516	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
214943	chr7	151755971	151756700	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	-20021	NM_001304527	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
5183	chr1	24946321	24946700	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-16234	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
173094	chr4	6304051	6304350	+	0	NA	TTS (NM_001145853)	TTS (NM_001145853)	34350	NM_006005	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
229917	chr9	126618771	126619300	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	5107	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
81156	chr16	4418671	4419650	+	0	NA	Intergenic	Intergenic	-2564	NM_024535	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
105352	chr17	82637901	82638500	+	0	NA	intron (NM_019613, intron 2 of 9)	(GAGGG)n|Simple_repeat|Simple_repeat	10244	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
198999	chr6	110949671	110950580	+	0	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	-8581	NM_138408	112495		NM_138408	ENSG00000155115	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC subunit 6	protein-coding
162823	chr3	49163101	49163300	+	0	NA	exon (NM_022903, exon 2 of 2)	exon (NM_022903, exon 2 of 2)	3131	NM_022903	64925		NM_022903	ENSG00000177352	CCDC71	-	coiled-coil domain containing 71	protein-coding
93089	chr17	17656671	17656830	+	0	NA	Intergenic	AluJo|SINE|Alu	20938	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
76725	chr15	76150571	76151250	+	0	NA	intron (NM_152335, intron 3 of 10)	intron (NM_152335, intron 3 of 10)	30576	NR_120360	101929439		NR_120360	ENSG00000259422	LOC101929439	-	uncharacterized LOC101929439	ncRNA
13142	chr1	111671371	111671530	+	0	NA	intron (NM_001370217, intron 1 of 7)	intron (NM_001370217, intron 1 of 7)	6656	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
68622	chr14	89669151	89669480	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-50150	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
109369	chr19	639251	640550	+	0	NA	promoter-TSS (NM_020637)	promoter-TSS (NM_020637)	5	NM_001300812	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
239367	chrY	20745171	20745330	+	0	NA	Intergenic	Intergenic	-10858	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
74448	chr15	59528651	59529450	+	0	NA	Intergenic	Intergenic	-82733	NM_004751	9245		NM_004751	ENSG00000140297	GCNT3	C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding
205704	chr7	23312171	23312530	+	0	NA	TTS (NM_138446)	TTS (NM_138446)	13011	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
154736	chr22	36471151	36471250	+	0	NA	intron (NM_012473, intron 3 of 3)	intron (NM_012473, intron 3 of 3)	10440	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
178871	chr4	154742151	154742650	+	0	NA	intron (NM_001301645, intron 1 of 2)	intron (NM_001301645, intron 1 of 2)	1559	NM_001301645	9227		NM_004744	ENSG00000121207	LRAT	LCA14	lecithin retinol acyltransferase	protein-coding
2215	chr1	8814901	8815200	+	0	NA	intron (NM_012102, intron 1 of 23)	intron (NM_012102, intron 1 of 23)	2590	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
131788	chr2	98502851	98503150	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	56990	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
35960	chr11	2778371	2779050	+	0	NA	intron (NM_181798, intron 15 of 15)	intron (NM_181798, intron 15 of 15)	-78712	NR_002728	10984		NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1	ncRNA
232508	chr9	136281851	136282730	+	0	NA	intron (NM_001291516, intron 9 of 9)	intron (NM_001291516, intron 9 of 9)	21804	NM_001378188	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
153256	chr22	24106801	24107380	+	0	NA	intron (NM_012295, intron 26 of 36)	intron (NM_012295, intron 26 of 36)	-74397	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
164245	chr3	57159171	57159700	+	0	NA	intron (NM_001318864, intron 2 of 13)	intron (NM_001318864, intron 2 of 13)	5918	NM_017563	54756		NM_017563	ENSG00000144730	IL17RD	HH18|IL-17RD|IL17RLM|SEF	interleukin 17 receptor D	protein-coding
220776	chr8	102528301	102529350	+	0	NA	Intergenic	Intergenic	-22764	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
97257	chr17	43003171	43003400	+	0	NA	TTS (NM_000988)	TTS (NM_000988)	-3499	NM_001330230	3430		NM_005533	ENSG00000068079	IFI35	IFP35	interferon induced protein 35	protein-coding
138718	chr2	213143121	213143580	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	7087	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
198124	chr6	90402021	90403550	+	0	NA	Intergenic	Intergenic	90043	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
81398	chr16	5208251	5208350	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-110480	NM_001289029	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
35995	chr11	2888331	2889150	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-2965	NM_001362474	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
126362	chr2	27436501	27437330	+	0	NA	intron (NM_001321362, intron 8 of 17)	intron (NM_001321362, intron 8 of 17)	-5451	NM_001168364	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
156434	chr22	41233551	41234130	+	0	NA	intron (NM_138481, intron 5 of 5)	intron (NM_138481, intron 5 of 5)	7091	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
14267	chr1	143334451	143334650	+	0	NA	Intergenic	CpG	88042	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
106230	chr18	11909821	11910230	+	0	NA	Intergenic	L1MC5a|LINE|L1	-1708	NR_040242	65258		NM_023075	ENSG00000154889	MPPE1	Cdc1|PGAP5	metallophosphoesterase 1	protein-coding
197058	chr6	53547601	53548750	+	0	NA	Intergenic	CpG	-3074	NM_001498	2729		NM_001498	ENSG00000001084	GCLC	GCL|GCS|GLCL|GLCLC	glutamate-cysteine ligase catalytic subunit	protein-coding
43496	chr11	78432201	78432430	+	0	NA	Intergenic	Intergenic	-2479	NR_120564	101928865		NR_120564	ENSG00000251323	LINC02728	-	long intergenic non-protein coding RNA 2728	ncRNA
140369	chr2	232875651	232876850	+	0	NA	exon (NM_001346120, exon 4 of 4)	exon (NM_001346120, exon 4 of 4)	418	NR_144372	389084		NM_206895	ENSG00000182600	SNORC	ASCL830|C2orf82|UNQ830	secondary ossification center associated regulator of chondrocyte maturation	protein-coding
66649	chr14	63873901	63874100	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	20996	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
46758	chr11	129767151	129767330	+	0	NA	Intergenic	Intergenic	-48541	NM_001331212	120224		NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
54595	chr12	92502471	92503230	+	0	NA	Intergenic	Intergenic	36171	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
228020	chr9	95772471	95773500	+	0	NA	Intergenic	Intergenic	-102706	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
112522	chr19	6503671	6503830	+	0	NA	promoter-TSS (NM_001289127)	promoter-TSS (NM_001289127)	-902	NM_001289123	10382		NM_006087	ENSG00000104833	TUBB4A	DYT4|TUBB4|beta-5	tubulin beta 4A class IVa	protein-coding
9155	chr1	45536421	45536680	+	0	NA	Intergenic	Intergenic	-13660	NM_001202431	5052		NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
205603	chr7	21967551	21968050	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-21901	NM_001127370	55536		NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
103373	chr17	78130101	78131200	+	0	NA	promoter-TSS (NM_152468)	promoter-TSS (NM_152468)	-121	NM_152468	147138		NM_152468	ENSG00000167895	TMC8	EV2|EVER2|EVIN2	transmembrane channel like 8	protein-coding
59907	chr13	30802071	30802230	+	0	NA	Intergenic	AluSz|SINE|Alu	-1056	NR_047012	100874158		NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
221574	chr8	125166901	125167100	+	0	NA	intron (NR_146191, intron 5 of 8)	AluJo|SINE|Alu	75140	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
80203	chr16	2151501	2152100	+	0	NA	intron (NM_014353, intron 4 of 8)	intron (NM_014353, intron 4 of 8)	3175	NM_014353	25837		NM_014353	ENSG00000167964	RAB26	V46133	RAB26, member RAS oncogene family	protein-coding
201485	chr6	148871251	148871350	+	0	NA	intron (NM_005715, intron 1 of 7)	MLT1A|LTR|ERVL-MaLR	93384	NR_038408	100128176		NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA
236313	chrX	68732921	68733180	+	0	NA	Intergenic	Intergenic	39411	NM_001142504	9754		NM_014725	ENSG00000130052	STARD8	ARHGAP38|DLC3|STARTGAP3	StAR related lipid transfer domain containing 8	protein-coding
208688	chr7	73236671	73236930	+	0	NA	TTS (NR_003186)	TTS (NR_003186)	16161	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
49776	chr12	31875051	31875850	+	0	NA	Intergenic	Intergenic	11753	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
19375	chr1	173995771	173995930	+	0	NA	intron (NM_172071, intron 1 of 19)	intron (NM_172071, intron 1 of 19)	-2778	NM_001300851	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
54560	chr12	92208221	92209130	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	62590	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
163697	chr3	52264901	52265850	+	0	NA	intron (NM_025222, intron 3 of 8)	intron (NM_025222, intron 3 of 8)	2986	NR_029660	406890		NR_029660	ENSG00000199150	MIRLET7G	LET7G|MIRNLET7G|hsa-let-7g|let-7g	microRNA let-7g	ncRNA
52885	chr12	57199551	57200050	+	0	NA	intron (NM_002332, intron 61 of 88)	intron (NM_002332, intron 61 of 88)	5296	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
208415	chr7	66745151	66746150	+	0	NA	intron (NM_001367749, intron 1 of 4)	AluSz6|SINE|Alu	4917	NM_001367735	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
65255	chr14	49911401	49912000	+	0	NA	Intergenic	Intergenic	18618	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
201618	chr6	149392251	149392550	+	0	NA	intron (NM_001369506, intron 4 of 7)	intron (NM_001369506, intron 4 of 7)	-7862	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
27120	chr10	27783701	27783900	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-37981	NM_173576	283078		NM_173576	ENSG00000150051	MKX	C10orf48|IFRX|IRXL1	mohawk homeobox	protein-coding
30816	chr10	85614401	85614850	+	0	NA	intron (NM_017551, intron 14 of 15)	intron (NM_017551, intron 14 of 15)	36894	NR_038986	100507470		NR_038986	ENSG00000234942	GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
70589	chr14	102697301	102697500	+	0	NA	intron (NM_015156, intron 3 of 11)	MIRb|SINE|MIR	-80049	NM_003300	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
205953	chr7	26148051	26148650	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3848	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
230926	chr9	129350271	129350630	+	0	NA	Intergenic	Intergenic	13527	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
114342	chr19	12164821	12165430	+	0	NA	intron (NM_001348013, intron 1 of 2)	intron (NM_001348013, intron 1 of 2)	2029	NM_003437	7695		NM_003437	ENSG00000196646	ZNF136	pHZ-20	zinc finger protein 136	protein-coding
58041	chr12	124458551	124458850	+	0	NA	intron (NM_001077261, intron 7 of 47)	intron (NM_001077261, intron 7 of 47)	108912	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
227545	chr9	91796521	91797800	+	0	NA	intron (NM_001318204, intron 1 of 7)	intron (NM_001318204, intron 1 of 7)	153068	NM_004560	4920		NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
144867	chr20	36906951	36907550	+	0	NA	intron (NM_001363733, intron 11 of 15)	AluJo|SINE|Alu	31112	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
106384	chr18	13370471	13370630	+	0	NA	intron (NM_001378098, intron 1 of 5)	intron (NM_001378098, intron 1 of 5)	31947	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
19423	chr1	174193401	174193800	+	0	NA	intron (NM_001366447, intron 1 of 20)	intron (NM_001366447, intron 1 of 20)	34080	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
121526	chr19	47227101	47227900	+	0	NA	promoter-TSS (NR_036159)	promoter-TSS (NR_036159)	-481	NR_036159	100422832		NR_036159	ENSG00000284411	MIR3191	mir-3191	microRNA 3191	ncRNA
49256	chr12	19456401	19456600	+	0	NA	intron (NM_001267043, intron 1 of 8)	intron (NM_001267043, intron 1 of 8)	15901	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
181703	chr5	50643471	50643850	+	0	NA	Intergenic	AluSz|SINE|Alu	-22271	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
136698	chr2	181134371	181134530	+	0	NA	intron (NR_130784, intron 1 of 4)	AluY|SINE|Alu	10613	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
148198	chr20	63558371	63558550	+	0	NA	3' UTR (NM_001037335, exon 20 of 20)	3' UTR (NM_001037335, exon 20 of 20)	4301	NM_001319152	79025		NM_024059	ENSG00000125531	FNDC11	C20orf195	fibronectin type III domain containing 11	protein-coding
115566	chr19	15702601	15702800	+	0	NA	Intergenic	L1PBa|LINE|L1	-25324	NM_013939	26538		NM_013939	ENSG00000171942	OR10H2	-	olfactory receptor family 10 subfamily H member 2	protein-coding
206800	chr7	36851821	36852400	+	0	NA	TTS (NM_001039459)	TTS (NM_001039459)	67322	NR_031604	100302113		NR_031604	ENSG00000221325	MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA
161677	chr3	43362351	43362650	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-10538	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
154360	chr22	33058271	33058430	+	0	NA	promoter-TSS (NM_001369907)	promoter-TSS (NM_001369907)	31	NM_001369907	8224		NM_003490	ENSG00000185666	SYN3	-	synapsin III	protein-coding
91194	chr17	3891771	3892600	+	0	NA	intron (NM_172207, intron 1 of 15)	intron (NM_172207, intron 1 of 15)	858	NM_172207	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
200272	chr6	132674921	132675180	+	0	NA	Intergenic	Intergenic	-15868	NM_138327	134864		NM_138327	ENSG00000146399	TAAR1	TA1|TAR1|TRAR1	trace amine associated receptor 1	protein-coding
23300	chr1	228068721	228069180	+	0	NA	Intergenic	Intergenic	7600	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
117722	chr19	29514751	29515280	+	0	NA	intron (NR_040029, intron 1 of 9)	intron (NR_040029, intron 1 of 9)	-10403	NM_001384641	342865		NM_001146339	ENSG00000187135	VSTM2B	-	V-set and transmembrane domain containing 2B	protein-coding
107405	chr18	46110201	46110400	+	0	NA	intron (NR_026978, intron 2 of 8)	AluJo|SINE|Alu	5915	NM_138443	115106		NM_138443	ENSG00000152240	HAUS1	CCDC5|HEI-C|HEIC|HsT1461	HAUS augmin like complex subunit 1	protein-coding
46278	chr11	124843901	124844600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21182	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
213829	chr7	141586951	141587450	+	0	NA	intron (NM_018238, intron 2 of 15)	L2b|LINE|L2	35790	NM_001364948	55750		NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
120623	chr19	45056571	45057080	+	0	NA	intron (NM_001278439, intron 5 of 19)	MIRb|SINE|MIR	17780	NR_103529	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
195259	chr6	36428651	36429130	+	0	NA	intron (NM_152990, intron 2 of 4)	AluSx|SINE|Alu	-13877	NM_001286580	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
101393	chr17	67363051	67363150	+	0	NA	intron (NM_001316341, intron 1 of 12)	intron (NM_001316341, intron 1 of 12)	3477	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
222745	chr8	141409721	141409980	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-11538	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
12519	chr1	108421151	108421680	+	0	NA	Intergenic	CpG	-28928	NM_001143987	653149		NM_001143987	ENSG00000186086	NBPF6	-	NBPF member 6	protein-coding
170147	chr3	183480151	183480530	+	0	NA	Intergenic	AluSc|SINE|Alu	26526	NR_145763	109617007		NR_145763	ENSG00000199363	SNORA63E	-	small nucleolar RNA, H/ACA box 63E	snoRNA
215189	chr7	155739021	155740080	+	0	NA	intron (NM_053043, intron 11 of 17)	intron (NM_053043, intron 11 of 17)	69613	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
130974	chr2	87571951	87572250	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-57655	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
65775	chr14	54443351	54443680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2141	NM_005776	10175		NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family member 1	protein-coding
185718	chr5	132055941	132056880	+	0	NA	Intergenic	Intergenic	-4245	NM_000588	3562		NM_000588	ENSG00000164399	IL3	IL-3|MCGF|MULTI-CSF	interleukin 3	protein-coding
144361	chr20	35071871	35072030	+	0	NA	intron (NM_199368, intron 2 of 18)	L1PA5|LINE|L1	20857	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
238394	chrX	150450571	150450930	+	0	NA	intron (NM_001177466, intron 1 of 5)	intron (NM_001177466, intron 1 of 5)	5296	NM_001177466	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
223594	chr8	144296771	144297200	+	0	NA	intron (NM_005526, intron 1 of 12)	intron (NM_005526, intron 1 of 12)	5381	NM_005526	3297		NM_005526	ENSG00000185122	HSF1	HSTF1	heat shock transcription factor 1	protein-coding
73008	chr15	40742271	40742630	+	0	NA	intron (NM_018145, intron 6 of 12)	intron (NM_018145, intron 6 of 12)	12804	NM_018145	55177		NM_018145	ENSG00000137824	RMDN3	FAM82A2|FAM82C|RMD-3|RMD3|ptpip51	regulator of microtubule dynamics 3	protein-coding
33133	chr10	112371821	112373000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1706	NM_203379	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
17728	chr1	158940151	158940450	+	0	NA	intron (NM_152501, intron 4 of 8)	intron (NM_152501, intron 4 of 8)	8748	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
65614	chr14	52269301	52269650	+	0	NA	exon (NM_001281469, exon 2 of 3)	exon (NM_001281469, exon 2 of 3)	1777	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
167121	chr3	127678801	127679000	+	0	NA	intron (NM_172027, intron 10 of 11)	intron (NM_172027, intron 10 of 11)	5948	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
168779	chr3	151328471	151328850	+	0	NA	exon (NM_176894, exon 2 of 2)	exon (NM_176894, exon 2 of 2)	889	NM_176894	53829		NM_023914	ENSG00000181631	P2RY13	FKSG77|GPCR1|GPR86|GPR94|P2Y13|SP174	purinergic receptor P2Y13	protein-coding
7891	chr1	36474021	36474680	+	0	NA	intron (NM_172313, intron 4 of 17)	MIR|SINE|MIR	8563	NM_172313	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
120724	chr19	45338321	45339100	+	0	NA	Intergenic	L2b|LINE|L2	-2040	NM_177417	147700		NM_145275	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
118433	chr19	35843721	35844350	+	0	NA	intron (NM_004646, intron 16 of 28)	intron (NM_004646, intron 16 of 28)	8469	NM_004646	4868		NM_004646	ENSG00000161270	NPHS1	CNF|NPHN|nephrin	NPHS1 adhesion molecule, nephrin	protein-coding
77356	chr15	82679421	82681200	+	0	NA	intron (NM_001278512, intron 8 of 26)	CpG-8520	-17635	NM_001348441	8120		NM_004644	ENSG00000103723	AP3B2	DEE48|EIEE48|NAPTB	adaptor related protein complex 3 subunit beta 2	protein-coding
78497	chr15	92924401	92924830	+	0	NA	intron (NM_001042572, intron 3 of 12)	intron (NM_001042572, intron 3 of 12)	20216	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
237708	chrX	124396571	124396730	+	0	NA	intron (NM_001163279, intron 27 of 31)	intron (NM_001163279, intron 27 of 31)	50087	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
225848	chr9	38070571	38071650	+	0	NA	Intergenic	Intergenic	-1883	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
29480	chr10	70569501	70569700	+	0	NA	Intergenic	L1MA8|LINE|L1	33141	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
181604	chr5	43533751	43534050	+	0	NA	intron (NM_183323, intron 8 of 10)	intron (NM_183323, intron 8 of 10)	-18752	NM_198566	375444		NM_198566	ENSG00000172244	C5orf34	-	chromosome 5 open reading frame 34	protein-coding
566	chr1	1258701	1259480	+	0	NA	intron (NM_194457, intron 2 of 5)	CpG	-12368	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
22594	chr1	223142321	223143580	+	0	NA	intron (NM_003268, intron 1 of 5)	CpG	298	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
171938	chr4	881251	882030	+	0	NA	intron (NM_001318134, intron 12 of 24)	intron (NM_001318134, intron 12 of 24)	50676	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
182815	chr5	69095751	69096280	+	0	NA	intron (NM_001251969, intron 1 of 2)	AluSx|SINE|Alu	2001	NM_001251969	64924		NM_022902	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 member 5	protein-coding
184084	chr5	93594801	93595280	+	0	NA	TTS (NM_005654)	TTS (NM_005654)	11818	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
17183	chr1	156234251	156234900	+	0	NA	intron (NM_001199663, intron 3 of 5)	AluSx1|SINE|Alu	-7609	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
178377	chr4	146520521	146521230	+	0	NA	intron (NR_133924, intron 1 of 9)	intron (NR_133924, intron 1 of 9)	1065	NM_001317816	84068		NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7|SSASKS	solute carrier family 10 member 7	protein-coding
58610	chr12	132484501	132485630	+	0	NA	Intergenic	Intergenic	-5086	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
74626	chr15	60703351	60703650	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	21931	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
1309	chr1	2395401	2395600	+	0	NA	intron (NM_007033, intron 1 of 6)	intron (NM_007033, intron 1 of 6)	3659	NM_007033	11079		NM_007033	ENSG00000157916	RER1	-	retention in endoplasmic reticulum sorting receptor 1	protein-coding
103046	chr17	77140101	77141830	+	0	NA	promoter-TSS (NM_001143998)	promoter-TSS (NM_001143998)	-4	NM_001143999	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
181954	chr5	55035071	55035630	+	0	NA	TTS (NM_002104)	TTS (NM_002104)	11094	NM_002104	3003		NM_002104	ENSG00000113088	GZMK	TRYP2	granzyme K	protein-coding
85897	chr16	57066751	57067050	+	0	NA	intron (NM_001384955, intron 33 of 47)	L2b|LINE|L2	-25683	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
97777	chr17	44570171	44570480	+	0	NA	Intergenic	AluSq|SINE|Alu	12841	NM_001466	2535		NM_001466	ENSG00000180340	FZD2	Fz2|OMOD2|fz-2|fzE2|hFz2	frizzled class receptor 2	protein-coding
198670	chr6	107860151	107860450	+	0	NA	Intergenic	L1PA3|LINE|L1	-35987	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
24884	chr10	986421	986900	+	0	NA	Intergenic	Intergenic	-1774	NM_012341	23560		NM_012341	ENSG00000107937	GTPBP4	CRFG|NGB|NOG1	GTP binding protein 4	protein-coding
142957	chr20	19540501	19540700	+	0	NA	intron (NM_020689, intron 3 of 16)	intron (NM_020689, intron 3 of 16)	-217658	NM_001378238	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
71540	chr14	106219671	106219830	+	0	NA	Intergenic	Intergenic	-67924	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
4216	chr1	19462021	19462350	+	0	NA	intron (NM_001206541, intron 1 of 8)	AluY|SINE|Alu	22110	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
209101	chr7	74884821	74885080	+	0	NA	intron (NR_040584, intron 3 of 7)	intron (NR_040584, intron 3 of 7)	5662	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
128459	chr2	55621171	55621330	+	0	NA	Intergenic	LTR28C|LTR|ERV1	-3628	NM_001282850	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
171074	chr3	195446221	195446480	+	0	NA	Intergenic	Intergenic	-3330	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
208293	chr7	66055601	66056030	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-20004	NM_001024943	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
31263	chr10	92212171	92212630	+	0	NA	intron (NM_014912, intron 2 of 9)	AluSq|SINE|Alu	30879	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
178520	chr4	150939951	150940430	+	0	NA	intron (NM_001367550, intron 2 of 56)	AluJo|SINE|Alu	75077	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
77198	chr15	80783271	80783630	+	0	NA	intron (NM_018689, intron 1 of 28)	intron (NM_018689, intron 1 of 28)	4080	NM_018689	57214		NM_018689	ENSG00000103888	CEMIP	CCSP1|CEMIP1|HYBID|KIAA1199|TMEM2L	cell migration inducing hyaluronidase 1	protein-coding
131294	chr2	96106751	96107050	+	0	NA	Intergenic	AluY|SINE|Alu	9671	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
64984	chr14	38045551	38045650	+	0	NA	Intergenic	L2a|LINE|L2	-143476	NR_135286	400208		NR_135286	ENSG00000259091	LINC00517	C14orf26	long intergenic non-protein coding RNA 517	ncRNA
180819	chr5	32442901	32444100	+	0	NA	intron (NR_144318, intron 2 of 18)	intron (NR_144318, intron 2 of 18)	1240	NM_016107	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
54829	chr12	94938751	94939250	+	0	NA	Intergenic	Intergenic	64697	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
38580	chr11	46123301	46123500	+	0	NA	Intergenic	Intergenic	-1946	NM_001352032	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
25145	chr10	4332721	4333280	+	0	NA	Intergenic	Intergenic	-51246	NR_108055	100507059		NR_108054	ENSG00000224382	LINC00703	-	long intergenic non-protein coding RNA 703	ncRNA
184317	chr5	96919751	96920350	+	0	NA	TTS (NM_022350)	TTS (NM_022350)	-16030	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
142607	chr20	5591951	5592250	+	0	NA	intron (NM_019593, intron 4 of 19)	intron (NM_019593, intron 4 of 19)	18906	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
27731	chr10	35088571	35088930	+	0	NA	intron (NM_001198777, intron 1 of 20)	intron (NM_001198777, intron 1 of 20)	1591	NM_001324375	8453		NM_003591	ENSG00000108094	CUL2	-	cullin 2	protein-coding
196987	chr6	53245151	53245250	+	0	NA	Intergenic	Intergenic	-31793	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
134463	chr2	143222051	143223350	+	0	NA	intron (NM_018460, intron 4 of 13)	(TTTGTT)n|Simple_repeat|Simple_repeat	93281	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
201992	chr6	152338451	152338870	+	0	NA	intron (NM_033071, intron 74 of 145)	intron (NM_033071, intron 74 of 145)	-41870	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
135065	chr2	156471021	156471280	+	0	NA	intron (NM_000408, intron 1 of 16)	intron (NM_000408, intron 1 of 16)	34771	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
177045	chr4	107913301	107913580	+	0	NA	3' UTR (NM_001375906, exon 8 of 8)	3' UTR (NM_001375906, exon 8 of 8)	-18109	NM_183075	113612		NM_183075	ENSG00000155016	CYP2U1	P450TEC|SPG49|SPG56	cytochrome P450 family 2 subfamily U member 1	protein-coding
162241	chr3	47163241	47165480	+	0	NA	promoter-TSS (NM_014159)	promoter-TSS (NM_014159)	-10	NR_033373	285352		NR_033373		KIF9-AS1	-	KIF9 antisense RNA 1	ncRNA
77405	chr15	83199021	83199630	+	0	NA	intron (NM_016073, intron 1 of 5)	intron (NM_016073, intron 1 of 5)	8498	NM_016073	50810		NM_016073	ENSG00000166503	HDGFL3	CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3	HDGF like 3	protein-coding
233226	chr9	137238101	137238500	+	0	NA	Intergenic	Intergenic	-2987	NM_006088	10383		NM_006088	ENSG00000188229	TUBB4B	Beta2|LCAEOD|TUBB2|TUBB2C	tubulin beta 4B class IVb	protein-coding
77891	chr15	89128101	89128300	+	0	NA	intron (NM_152924, intron 3 of 10)	intron (NM_152924, intron 3 of 10)	39744	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
90508	chr17	1461221	1461700	+	0	NA	Intergenic	L2a|LINE|L2	-5228	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
113844	chr19	10634801	10635380	+	0	NA	intron (NM_001363611, intron 12 of 22)	intron (NM_001363611, intron 12 of 22)	9537	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
43285	chr11	75858671	75858830	+	0	NA	intron (NM_003369, intron 2 of 14)	L1ME4b|LINE|L1	43540	NM_003369	7405		NM_003369	ENSG00000198382	UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
186208	chr5	134368321	134368580	+	0	NA	intron (NM_001300853, intron 1 of 12)	AluY|SINE|Alu	-1279	NM_001113575	51265		NM_016508	ENSG00000006837	CDKL3	NKIAMRE	cyclin dependent kinase like 3	protein-coding
115598	chr19	16034401	16034980	+	0	NA	non-coding (NR_024335, exon 2 of 5)	non-coding (NR_024335, exon 2 of 5)	570	NR_110321	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
68755	chr14	91055571	91056050	+	0	NA	intron (NM_001322235, intron 1 of 17)	MLT1F|LTR|ERVL-MaLR	4314	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
155518	chr22	38690071	38690230	+	0	NA	intron (NM_014876, intron 2 of 4)	intron (NM_014876, intron 2 of 4)	8193	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
148166	chr20	63528201	63528800	+	0	NA	TTS (NM_001256358)	TTS (NM_001256358)	7735	NM_024299	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
173406	chr4	8092221	8092480	+	0	NA	intron (NM_001130086, intron 3 of 17)	MER4CL34|LTR|ERV1	-20362	NM_001286688	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
76652	chr15	75644801	75645000	+	0	NA	Intergenic	AluJb|SINE|Alu	-3012	NM_153271	257364		NM_153271	ENSG00000173548	SNX33	SH3PX3|SH3PXD3C|SNX30	sorting nexin 33	protein-coding
136666	chr2	180976971	180977130	+	0	NA	Intergenic	Intergenic	-3335	NM_001278555	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
26768	chr10	22817001	22817300	+	0	NA	Intergenic	Intergenic	-102572	NM_005028	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
236160	chrX	64257801	64258080	+	0	NA	Intergenic	L1PA3|LINE|L1	-27333	NM_130388	142689		NM_130388	ENSG00000198881	ASB12	-	ankyrin repeat and SOCS box containing 12	protein-coding
101142	chr17	65044771	65045630	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	10574	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
150956	chr21	44313221	44313480	+	0	NA	intron (NM_001002021, intron 8 of 24)	intron (NM_001002021, intron 8 of 24)	13297	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
1710	chr1	5411451	5411950	+	0	NA	Intergenic	Intergenic	451041	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
60084	chr13	35164301	35164550	+	0	NA	exon (NM_001379245, exon 24 of 58)	exon (NM_001379245, exon 24 of 58)	222155	NM_001379245	26960		NM_015678	ENSG00000172915	NBEA	BCL8B|LYST2|NEDEGE	neurobeachin	protein-coding
224412	chr9	14993071	14993830	+	0	NA	non-coding (NR_003920, exon 1 of 5)	non-coding (NR_003920, exon 1 of 5)	123	NR_003920	389705		NR_003920		LOC389705	-	histone PARylation factor 1 pseudogene	pseudo
98385	chr17	46534671	46534850	+	0	NA	intron (NM_001288813, intron 3 of 3)	SVA_C|Retroposon|SVA	22050	NM_001006607	474170		NM_001006607	ENSG00000238083	LRRC37A2	LRRC37	leucine rich repeat containing 37 member A2	protein-coding
6224	chr1	27508201	27508400	+	0	NA	Intergenic	Intergenic	-18133	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
199262	chr6	111853571	111854130	+	0	NA	intron (NM_002037, intron 1 of 13)	AluJr4|SINE|Alu	19221	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
51468	chr12	52061651	52061750	+	0	NA	Intergenic	Intergenic	-8274	NM_021934	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
151503	chr21	46370901	46371100	+	0	NA	intron (NM_006031, intron 15 of 46)	AluY|SINE|Alu	46333	NM_001315529	5116		NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
80726	chr16	3103001	3104130	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-4271	NM_001365273	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
81028	chr16	4264721	4265180	+	0	NA	intron (NM_003223, intron 1 of 6)	intron (NM_003223, intron 1 of 6)	8073	NM_003223	7023		NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding
227321	chr9	89439921	89440980	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	39440	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
220749	chr8	102286051	102286350	+	0	NA	intron (NM_001282873, intron 38 of 58)	MER20|DNA|hAT-Charlie	46749	NR_125415	101927221		NR_125415		UBR5-DT	UBR5-AS1	UBR5 divergent transcript	ncRNA
166910	chr3	124928621	124929100	+	0	NA	intron (NM_033049, intron 1 of 11)	intron (NM_033049, intron 1 of 11)	5891	NM_033049	56667		NM_033049	ENSG00000173702	MUC13	DRCC1|MUC-13	mucin 13, cell surface associated	protein-coding
51100	chr12	50039201	50039980	+	0	NA	Intergenic	Intergenic	-14033	NM_001320004	29127		NM_013277	ENSG00000161800	RACGAP1	CDAN3B|CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
130038	chr2	74418701	74418900	+	0	NA	intron (NM_001316764, intron 1 of 2)	MIRb|SINE|MIR	-1083	NM_001145054	388963		NM_001145054	ENSG00000284308	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
88332	chr16	84513071	84513600	+	0	NA	Intergenic	LTR51|LTR|ERV1	-8676	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
150606	chr21	43361801	43363250	+	0	NA	promoter-TSS (NR_131902)	promoter-TSS (NR_131902)	-176	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
26539	chr10	21524201	21524400	+	0	NA	intron (NM_207371, intron 1 of 3)	intron (NM_207371, intron 1 of 3)	1382	NM_207371	387640		NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
101099	chr17	64973921	64974700	+	0	NA	intron (NR_026903, intron 1 of 4)	AluJb|SINE|Alu	1275	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
231097	chr9	129800871	129801030	+	0	NA	Intergenic	AluSx|SINE|Alu	-2193	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
138540	chr2	207528781	207530400	+	0	NA	promoter-TSS (NM_001320793)	promoter-TSS (NM_001320793)	-372	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
144848	chr20	36889171	36889550	+	0	NA	TTS (NM_015474)	TTS (NM_015474)	13222	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
123340	chr19	53851621	53852130	+	0	NA	Intergenic	L1M5|LINE|L1	-13753	NM_001290193	91663		NM_138373	ENSG00000179820	MYADM	SB135	myeloid associated differentiation marker	protein-coding
14494	chr1	144551151	144552800	+	0	NA	promoter-TSS (NR_145576)	promoter-TSS (NR_145576)	-32	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
19865	chr1	183471701	183473380	+	0	NA	promoter-TSS (NR_040063)	promoter-TSS (NR_040063)	41	NM_001375585	9887		NM_014837	ENSG00000116698	SMG7	C1orf16|EST1C|SGA56M	SMG7 nonsense mediated mRNA decay factor	protein-coding
123875	chr19	55279711	55281150	+	0	NA	promoter-TSS (NM_001297600)	promoter-TSS (NM_001297600)	-47	NM_001130106	23640		NM_012267	ENSG00000133265	HSPBP1	FES1	HSPA (Hsp70) binding protein 1	protein-coding
168797	chr3	152196171	152196480	+	0	NA	intron (NR_136178, intron 1 of 2)	AluYk2|SINE|Alu	9104	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
178399	chr4	147639001	147639400	+	0	NA	intron (NM_001350141, intron 9 of 10)	MIRc|SINE|MIR	21803	NM_018241	55751		NM_018241	ENSG00000164168	TMEM184C	SLC51C3|TMEM34	transmembrane protein 184C	protein-coding
176881	chr4	102757371	102758130	+	0	NA	intron (NM_005908, intron 1 of 16)	L2a|LINE|L2	3218	NM_005908	4126		NM_005908	ENSG00000109323	MANBA	MANB1	mannosidase beta	protein-coding
15956	chr1	151841201	151841400	+	0	NA	promoter-TSS (NM_001136003)	promoter-TSS (NM_001136003)	-743	NM_001136003	100191040		NM_001136003	ENSG00000225556	C2CD4D	FAM148D	C2 calcium dependent domain containing 4D	protein-coding
4176	chr1	19421121	19421380	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	63045	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
96568	chr17	40476051	40477100	+	0	NA	3' UTR (NM_032865, exon 13 of 13)	3' UTR (NM_032865, exon 13 of 13)	25048	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
82083	chr16	14289071	14289230	+	0	NA	Intergenic	Intergenic	-13138	NR_132983	100129781		NR_132983	ENSG00000262454	MIR193BHG	HypERlnc|lincNORS	MIR193b-365a host gene	ncRNA
193123	chr6	28983801	28984950	+	0	NA	promoter-TSS (NR_135289)	promoter-TSS (NR_135289)	-374	NR_135289	414761		NR_135289		HCG15	HCG16	HLA complex group 15	ncRNA
53645	chr12	68259421	68259680	+	0	NA	Intergenic	Intergenic	-5946	NM_020525	50616		NM_020525	ENSG00000127318	IL22	IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18	interleukin 22	protein-coding
100144	chr17	58519401	58520180	+	0	NA	promoter-TSS (NR_110810)	promoter-TSS (NR_110810)	-47	NR_110810	101927688		NR_110810	ENSG00000264672	SEPTIN4-AS1	SEPT4-AS1	SEPTIN4 antisense RNA 1	ncRNA
13218	chr1	112661221	112661580	+	0	NA	intron (NM_006135, intron 7 of 9)	LTR16C|LTR|ERVL	-12912	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
192414	chr6	24858151	24859500	+	0	NA	intron (NM_001286447, intron 8 of 13)	intron (NM_001286447, intron 8 of 13)	18445	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
91002	chr17	2776001	2776400	+	0	NA	promoter-TSS (NM_001330058)	promoter-TSS (NM_001330058)	-558	NM_001330058	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
195883	chr6	41681751	41682580	+	0	NA	Intergenic	Intergenic	43697	NM_005586	4188		NM_005586	ENSG00000112559	MDFI	I-MF|I-mfa	MyoD family inhibitor	protein-coding
187378	chr5	141863251	141863880	+	0	NA	exon (NM_001278615, exon 2 of 2)	exon (NM_001278615, exon 2 of 2)	2637	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
87280	chr16	70023321	70023830	+	0	NA	intron (NR_003610, intron 10 of 25)	intron (NR_003610, intron 10 of 25)	-6771	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
19890	chr1	183653271	183653800	+	0	NA	promoter-TSS (NM_203454)	promoter-TSS (NM_203454)	-219	NM_203454	403314		NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4	protein-coding
96739	chr17	41684121	41685230	+	0	NA	Intergenic	AluJo|SINE|Alu	-4210	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
198808	chr6	109020971	109021150	+	0	NA	intron (NM_014454, intron 1 of 9)	AluJo|SINE|Alu	-11505	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
82276	chr16	15219921	15220200	+	0	NA	Intergenic	Intergenic	-61539	NR_049832	100846994		NR_049832	ENSG00000264722	MIR3670-2	-	microRNA 3670-2	ncRNA
229610	chr9	123927021	123927280	+	0	NA	intron (NR_148208, intron 1 of 20)	MIR|SINE|MIR	2976	NM_001352968	57706		NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
203788	chr7	1243751	1244480	+	0	NA	Intergenic	Intergenic	11243	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
137025	chr2	190695701	190696300	+	0	NA	Intergenic	Intergenic	36842	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
1083	chr1	1931971	1932130	+	0	NA	intron (NM_001304360, intron 25 of 38)	AluSx1|SINE|Alu	-12771	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
129116	chr2	65204951	65205050	+	0	NA	Intergenic	Intergenic	-22695	NM_001005386	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
20342	chr1	197808101	197808300	+	0	NA	Intergenic	LTR32|LTR|ERVL	-32720	NM_001195215	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
57396	chr12	121822351	121823450	+	0	NA	exon (NM_001353345, exon 12 of 17)	exon (NM_001353345, exon 12 of 17)	18891	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
34122	chr10	127906901	127907600	+	0	NA	5' UTR (NM_006504, exon 1 of 21)	5' UTR (NM_006504, exon 1 of 21)	147	NM_001323355	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
58457	chr12	132087771	132088130	+	0	NA	intron (NR_003290, intron 2 of 9)	intron (NR_003290, intron 2 of 9)	3667	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
206678	chr7	36389131	36390930	+	0	NA	exon (NM_001284302, exon 1 of 23)	exon (NM_001284302, exon 1 of 23)	168	NM_018685	54443		NM_018685	ENSG00000011426	ANLN	FSGS8|Scraps|scra	anillin, actin binding protein	protein-coding
36398	chr11	4066821	4067500	+	0	NA	intron (NR_168438, intron 5 of 9)	intron (NR_168438, intron 5 of 9)	-27525	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
133618	chr2	126660771	126660930	+	0	NA	intron (NM_016815, intron 1 of 2)	intron (NM_016815, intron 1 of 2)	4692	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
170072	chr3	182913671	182914630	+	0	NA	intron (NM_014616, intron 29 of 29)	intron (NM_014616, intron 29 of 29)	66388	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
58935	chr13	19766521	19767300	+	0	NA	intron (NM_001354909, intron 2 of 8)	AluJo|SINE|Alu	16035	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
35462	chr11	1465171	1465850	+	0	NA	Intergenic	Intergenic	15376	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
191461	chr6	10837701	10839300	+	0	NA	promoter-TSS (NM_001377262)	promoter-TSS (NM_001377262)	39	NM_001242957	4117		NM_005906	ENSG00000111837	MAK	RP62	male germ cell associated kinase	protein-coding
149144	chr21	17790621	17791150	+	0	NA	3' UTR (NM_001100420, exon 5 of 5)	3' UTR (NM_001100420, exon 5 of 5)	1624	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
130292	chr2	84903071	84903600	+	0	NA	Intergenic	Intergenic	-2321	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
161699	chr3	43502901	43503500	+	0	NA	intron (NM_001346467, intron 12 of 13)	intron (NM_001346467, intron 12 of 13)	118726	NM_001346467	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
37919	chr11	34159721	34159980	+	0	NA	intron (NM_145804, intron 13 of 16)	intron (NM_145804, intron 13 of 16)	54221	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
191790	chr6	14140001	14140200	+	0	NA	Intergenic	Intergenic	22328	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
108374	chr18	68721421	68722580	+	0	NA	intron (NM_001093729, intron 2 of 9)	intron (NM_001093729, intron 2 of 9)	6784	NM_001093729	79839		NM_024781	ENSG00000150636	CCDC102B	ACY1L|AN|C18orf14|HsT1731	coiled-coil domain containing 102B	protein-coding
47987	chr12	6908151	6908830	+	0	NA	intron (NM_006992, intron 5 of 6)	AluSx|SINE|Alu	3668	NM_201650	10233		NM_006992	ENSG00000010626	LRRC23	LRPB7	leucine rich repeat containing 23	protein-coding
133485	chr2	119930601	119930830	+	0	NA	intron (NM_002830, intron 13 of 26)	intron (NM_002830, intron 13 of 26)	-82362	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
20708	chr1	200738401	200739900	+	0	NA	promoter-TSS (NM_001297707)	promoter-TSS (NM_001297707)	-422	NM_001297707	23271		NM_203459	ENSG00000118200	CAMSAP2	CAMSAP1L1	calmodulin regulated spectrin associated protein family member 2	protein-coding
226514	chr9	71860151	71860250	+	0	NA	Intergenic	L1M4b|LINE|L1	50993	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
200994	chr6	139533451	139533750	+	0	NA	Intergenic	Intergenic	-59004	NR_033919	645434		NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA
231373	chr9	130682401	130683000	+	0	NA	3' UTR (NM_021619, exon 5 of 5)	3' UTR (NM_021619, exon 5 of 5)	-11060	NM_001282709	23404		NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|SHRF|hRrp4p|p7	exosome component 2	protein-coding
21006	chr1	202813271	202813430	+	0	NA	Intergenic	MIRc|SINE|MIR	2404	NR_046326	100506696		NR_046325	ENSG00000228288	PCAT6	KDM5B-AS1|KDM5BAS1|PCAN-R1|ncRNA-a2|onco-lncRNA-96	prostate cancer associated transcript 6	ncRNA
90346	chr17	1193251	1193550	+	0	NA	intron (NM_001322841, intron 1 of 22)	MIRb|SINE|MIR	-6128	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
24419	chr1	243482571	243483780	+	0	NA	intron (NM_001350251, intron 19 of 20).2	CpG	136999	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
119759	chr19	41288301	41289330	+	0	NA	intron (NM_144732, intron 7 of 14)	intron (NM_144732, intron 7 of 14)	-21357	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
211321	chr7	104196171	104196530	+	0	NA	intron (NM_002553, intron 4 of 13)	intron (NM_002553, intron 4 of 13)	11663	NM_002553	5001		NM_002553	ENSG00000164815	ORC5	ORC5L|ORC5P|ORC5T|PPP1R117	origin recognition complex subunit 5	protein-coding
80522	chr16	2760951	2761130	+	0	NA	intron (NM_016333, intron 10 of 14)	intron (NM_016333, intron 10 of 14)	8402	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
239348	chrY	19465721	19466250	+	0	NA	intron (NR_033732, intron 5 of 10)	intron (NR_033732, intron 5 of 10)	37168	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
97531	chr17	44007941	44008930	+	0	NA	intron (NM_153006, intron 6 of 6)	intron (NM_153006, intron 6 of 6)	3813	NM_153006	162417		NM_153006	ENSG00000161653	NAGS	AGAS|ARGA	N-acetylglutamate synthase	protein-coding
202125	chr6	154798951	154799250	+	0	NA	intron (NM_001286199, intron 7 of 20)	AluSx1|SINE|Alu	-54260	NR_036100	100422821		NR_036100	ENSG00000264814	MIR1273C	-	microRNA 1273c	ncRNA
61314	chr13	50358171	50358930	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	168899	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
52700	chr12	56523301	56523500	+	0	NA	intron (NM_002898, intron 1 of 13)	L1MA9|LINE|L1	1580	NM_002898	5939		NM_002898	ENSG00000076067	RBMS2	SCR3	RNA binding motif single stranded interacting protein 2	protein-coding
225361	chr9	34675051	34675350	+	0	NA	Intergenic	Intergenic	-9144	NM_001320037	730098		NM_001320037	ENSG00000187186	LOC730098	-	uncharacterized LOC730098	protein-coding
169286	chr3	158118351	158118460	+	0	NA	intron (NM_001271838, intron 1 of 9)	intron (NM_001271838, intron 1 of 9)	8316	NM_001271838	51319		NM_016625	ENSG00000174891	RSRC1	BM-011|MRT70|SFRS21|SRrp53	arginine and serine rich coiled-coil 1	protein-coding
235911	chrX	53078501	53079300	+	0	NA	3' UTR (NM_018969, exon 2 of 2)	3' UTR (NM_018969, exon 2 of 2)	-3467	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
3434	chr1	15864221	15864680	+	0	NA	intron (NM_015001, intron 1 of 14)	AluSz6|SINE|Alu	-16303	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
199036	chr6	111338821	111339200	+	0	NA	intron (NM_001372078, intron 21 of 31)	MIRb|SINE|MIR	79671	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
92794	chr17	15958871	15959630	+	0	NA	intron (NM_000676, intron 1 of 1)	intron (NM_000676, intron 1 of 1)	14333	NM_000676	136		NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
2012	chr1	6788821	6789280	+	0	NA	intron (NR_146202, intron 1 of 4)	intron (NR_146202, intron 1 of 4)	3596	NM_001349609	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
121722	chr19	47697751	47698550	+	0	NA	intron (NM_015711, intron 11 of 14)	intron (NM_015711, intron 11 of 14)	-15272	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
145412	chr20	41695471	41695630	+	0	NA	Intergenic	Intergenic	-77173	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
39178	chr11	57426651	57428280	+	0	NA	promoter-TSS (NM_001278206)	promoter-TSS (NM_001278206)	115	NM_017611	29015		NM_014096	ENSG00000134802	SLC43A3	EEG1|ENBT1|FOAP-13|PRO1659|SEEEG-1	solute carrier family 43 member 3	protein-coding
179180	chr4	173168021	173169100	+	0	NA	promoter-TSS (NM_001375599)	promoter-TSS (NM_001375599)	-251	NM_001375599	51809		NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
115762	chr19	16331801	16332600	+	0	NA	Intergenic	MIRb|SINE|MIR	7374	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
40711	chr11	64793351	64794350	+	0	NA	intron (NM_004579, intron 24 of 31)	(GCCTGTTGG)n|Simple_repeat|Simple_repeat	9364	NM_004579	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
212774	chr7	130010301	130011400	+	0	NA	Intergenic	Intergenic	40524	NM_016478	51530		NM_016478	ENSG00000091732	ZC3HC1	HSPC216|NIPA	zinc finger C3HC-type containing 1	protein-coding
117526	chr19	20367901	20368100	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	31354	NR_036053	100302179		NR_036053	ENSG00000238517	MIR1270	MIR1270-1|MIR1270-2|MIRN1270|hsa-mir-1270|hsa-mir-1270-1|mir-1270	microRNA 1270	ncRNA
180602	chr5	16447071	16447230	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-6048	NR_104625	101929505		NR_104625	ENSG00000248150	LINC02150	-	long intergenic non-protein coding RNA 2150	ncRNA
36156	chr11	3145071	3145230	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	20160	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
8200	chr1	39579001	39579450	+	0	NA	Intergenic	AluJo|SINE|Alu	-2435	NM_003819	8761		NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
39871	chr11	62460421	62460880	+	0	NA	intron (NM_024060, intron 5 of 5)	intron (NM_024060, intron 5 of 5)	41617	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
165161	chr3	72310271	72310830	+	0	NA	Intergenic	Intergenic	136073	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
206351	chr7	30419951	30420300	+	0	NA	Intergenic	L1PA2|LINE|L1	29240	NR_108081	100506516		NR_108081	ENSG00000281404	LINC01176	-	long intergenic non-protein coding RNA 1176	ncRNA
27577	chr10	32370321	32370580	+	0	NA	intron (NR_104163, intron 1 of 1)	MER5B|DNA|hAT-Charlie	8319	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
163990	chr3	53153951	53154250	+	0	NA	Intergenic	Intergenic	-7109	NM_006254	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
101077	chr17	64910501	64910700	+	0	NA	intron (NM_199340, intron 2 of 14)	intron (NM_199340, intron 2 of 14)	8891	NM_199340	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
141255	chr2	239882221	239882550	+	0	NA	Intergenic	Intergenic	60709	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
129733	chr2	70923551	70923650	+	0	NA	intron (NM_012476, intron 2 of 2)	MER21C|LTR|ERVL	-12300	NM_001692	525		NM_001692	ENSG00000116039	ATP6V1B1	ATP6B1|DRTA2|RTA1B|VATB|VMA2|VPP3	ATPase H+ transporting V1 subunit B1	protein-coding
231079	chr9	129726571	129727080	+	0	NA	Intergenic	Intergenic	-8119	NR_132102	101929437		NR_132102	ENSG00000236024	PRRX2-AS1	-	PRRX2 antisense RNA 1	ncRNA
56692	chr12	120041271	120041630	+	0	NA	intron (NR_147894, intron 3 of 8)	L2a|LINE|L2	51606	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
126530	chr2	28545701	28546550	+	0	NA	intron (NM_153021, intron 14 of 57)	intron (NM_153021, intron 14 of 57)	-20232	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
180952	chr5	35479171	35479630	+	0	NA	Intergenic	Intergenic	-138463	NM_024867	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
130127	chr2	74648001	74648350	+	0	NA	promoter-TSS (NM_138804)	promoter-TSS (NM_138804)	-138	NM_138804	130951		NM_138804	ENSG00000159374	M1AP	C2orf65|D6Mm5e|SPATA37|SPGF48	meiosis 1 associated protein	protein-coding
200129	chr6	130222521	130223200	+	0	NA	promoter-TSS (NM_001017373)	promoter-TSS (NM_001017373)	91	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
33705	chr10	120987101	120987500	+	0	NA	Intergenic	Intergenic	135938	NM_018117	55717		NM_018117	ENSG00000120008	WDR11	BRWD2|DR11|HH14|SRI1|WDR15	WD repeat domain 11	protein-coding
187651	chr5	143055501	143055800	+	0	NA	intron (NR_146198, intron 15 of 22)	intron (NR_146198, intron 15 of 22)	-136850	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
57851	chr12	123269171	123270200	+	0	NA	intron (NR_073007, intron 1 of 3)	CpG	598	NM_001270433	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
118221	chr19	35171801	35172680	+	0	NA	Intergenic	AluSz|SINE|Alu	17505	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
75764	chr15	68559421	68560200	+	0	NA	intron (NM_001324014, intron 2 of 12)	CpG	-19183	NM_006091	10391		NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
2127	chr1	8315621	8316100	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-2254	NM_001379614	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
212673	chr7	129610201	129610400	+	0	NA	Intergenic	AluJb|SINE|Alu	-1420	NM_001293163	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
119931	chr19	41820921	41821430	+	0	NA	Intergenic	L1M1|LINE|L1	22552	NM_001291419	147719		NM_173506	ENSG00000273111	LYPD4	SMR	LY6/PLAUR domain containing 4	protein-coding
178093	chr4	140252451	140253360	+	0	NA	Intergenic	CpG	-4403	NM_032547	60592		NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding
55477	chr12	104714051	104714750	+	0	NA	intron (NM_018413, intron 2 of 2)	MIRc|SINE|MIR	122767	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
201274	chr6	144219101	144219400	+	0	NA	Intergenic	Intergenic	68733	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
163646	chr3	52143951	52144850	+	0	NA	intron (NM_001161580, intron 6 of 9)	intron (NM_001161580, intron 6 of 9)	10023	NM_015426	25886		NM_015426	ENSG00000164087	POC1A	PIX2|SOFT|WDR51A	POC1 centriolar protein A	protein-coding
232621	chr9	136444521	136444980	+	0	NA	intron (NM_001276418, intron 27 of 28)	AluSp|SINE|Alu	-4905	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
32640	chr10	103696251	103697130	+	0	NA	intron (NM_014631, intron 5 of 13)	intron (NM_014631, intron 5 of 13)	-18475	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
138273	chr2	203579151	203579450	+	0	NA	Intergenic	Intergenic	-43999	NM_213589	65059		NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
154655	chr22	36342671	36343330	+	0	NA	intron (NM_002473, intron 2 of 40)	intron (NM_002473, intron 2 of 40)	44967	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
131972	chr2	100139051	100139150	+	0	NA	intron (NM_002285, intron 1 of 23)	intron (NM_002285, intron 1 of 23)	3490	NM_002285	3899		NM_002285	ENSG00000144218	AFF3	KINS|LAF4|MLLT2-like	ALF transcription elongation factor 3	protein-coding
187901	chr5	148834651	148835450	+	0	NA	Intergenic	Intergenic	8439	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
129634	chr2	70134801	70135000	+	0	NA	Intergenic	AluJo|SINE|Alu	-9584	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
57158	chr12	121299121	121299380	+	0	NA	promoter-TSS (NM_006549)	promoter-TSS (NM_006549)	-942	NM_153500	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
207245	chr7	43808071	43808980	+	0	NA	Intergenic	Intergenic	49845	NM_000712	644		NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA|BVRalpha	biliverdin reductase A	protein-coding
41420	chr11	66054751	66055650	+	0	NA	exon (NM_006842, exon 4 of 22)	exon (NM_006842, exon 4 of 22)	2056	NR_145738	109616986		NR_145738		SNORD13F	-	small nucleolar RNA, C/D box 13F	snoRNA
18976	chr1	169102521	169103130	+	0	NA	Intergenic	Intergenic	-1299	NR_135799	101928596		NR_135799	ENSG00000237707	LOC101928596	-	uncharacterized LOC101928596	ncRNA
156844	chr22	41960321	41961100	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	8523	NR_024355								
154905	chr22	37182871	37183050	+	0	NA	intron (NM_031910, intron 2 of 2)	MIRb|SINE|MIR	5287	NM_031910	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
39669	chr11	61687151	61687250	+	0	NA	intron (NM_006133, intron 1 of 19)	MIRb|SINE|MIR	6809	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
154532	chr22	36148521	36149050	+	0	NA	intron (NM_145640, intron 1 of 2)	intron (NM_145640, intron 1 of 2)	11970	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
36028	chr11	2919501	2920100	+	0	NA	intron (NM_183233, intron 8 of 10)	intron (NM_183233, intron 8 of 10)	9620	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
93437	chr17	18624901	18626100	+	0	NA	non-coding (NR_036647, exon 1 of 17)	non-coding (NR_036647, exon 1 of 17)	117	NR_036647	284047		NR_036647	ENSG00000291090	CCDC144BP	CCDC144B	coiled-coil domain containing 144B, pseudogene	pseudo
101226	chr17	65742701	65743130	+	0	NA	intron (NR_126542, intron 2 of 5)	intron (NR_126542, intron 2 of 5)	83536	NM_001037325	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
118843	chr19	38633601	38633980	+	0	NA	intron (NM_013234, intron 6 of 7).2	AluSx|SINE|Alu	-13859	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
133992	chr2	130831771	130831930	+	0	NA	Intergenic	(CCTGC)n|Simple_repeat|Simple_repeat	-5064	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
170196	chr3	183883871	183885280	+	0	NA	intron (NM_001037639, intron 1 of 8)	GA-rich|Low_complexity|Low_complexity	305	NM_001324437	55486		NM_018622	ENSG00000175193	PARL	PRO2207|PSARL|PSARL1|PSENIP2|RHBDS1	presenilin associated rhomboid like	protein-coding
225438	chr9	35095001	35095200	+	0	NA	exon (NM_001201484, exon 3 of 13)	exon (NM_001201484, exon 3 of 13)	1449	NM_001201484	84720		NM_032634	ENSG00000165282	PIGO	HPMRS2	phosphatidylinositol glycan anchor biosynthesis class O	protein-coding
17144	chr1	156190201	156190800	+	0	NA	Intergenic	AluSz|SINE|Alu	-3604	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
152378	chr22	20515971	20516330	+	0	NA	intron (NM_001293237, intron 1 of 16)	AluSp|SINE|Alu	8103	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
220572	chr8	100807051	100807980	+	0	NA	Intergenic	AluJb|SINE|Alu	-85427	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
2175	chr1	8500851	8501880	+	0	NA	intron (NM_012102, intron 9 of 23)	SVA_E|Retroposon|SVA	-6452	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
62204	chr13	98446971	98447130	+	0	NA	3' UTR (NM_001032296, exon 11 of 11)	3' UTR (NM_001032296, exon 11 of 11)	75075	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
213410	chr7	137933701	137933930	+	0	NA	promoter-TSS (NM_001318246)	promoter-TSS (NM_001318246)	-827	NM_001318246	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
203294	chr6	169959071	169960000	+	0	NA	Intergenic	Intergenic	-3088	NR_027434	100131532		NR_027434		LOC100131532	-	uncharacterized LOC100131532	ncRNA
191338	chr6	7114021	7115030	+	0	NA	intron (NM_001003698, intron 1 of 11)	MER20|DNA|hAT-Charlie	6564	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
5645	chr1	26278001	26278400	+	0	NA	3' UTR (NM_022778, exon 14 of 14)	3' UTR (NM_022778, exon 14 of 14)	-1886	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
198977	chr6	110895871	110896030	+	0	NA	TTS (NM_001287214)	TTS (NM_001287214)	21166	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
24843	chr10	426751	426930	+	0	NA	intron (NM_014974, intron 4 of 36)	L1MB7|LINE|L1	-201724	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
176014	chr4	82282971	82283530	+	0	NA	Intergenic	Intergenic	90741	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
103097	chr17	77340021	77340280	+	0	NA	intron (NM_006640, intron 1 of 10)	AluSz|SINE|Alu	20635	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
49572	chr12	26943851	26944150	+	0	NA	intron (NM_001171888, intron 1 of 4)	L1MD|LINE|L1	5530	NM_015633	26127		NM_015633	ENSG00000111790	FGFR1OP2	HSPC123-like|WIT3.0	FGFR1 oncogene partner 2	protein-coding
233099	chr9	137116951	137117050	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-2267	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
217574	chr8	29469071	29469480	+	0	NA	Intergenic	Intergenic	-118591	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
220465	chr8	100425221	100425680	+	0	NA	Intergenic	AluSp|SINE|Alu	42687	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
112726	chr19	7293321	7293750	+	0	NA	intron (NM_001079817, intron 1 of 20)	CpG	879	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
32011	chr10	100994801	100995100	+	0	NA	TTS (NM_001163814)	TTS (NM_001163814)	-2121	NM_032429	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
204121	chr7	2268801	2269130	+	0	NA	intron (NM_013321, intron 5 of 10)	SVA_F|Retroposon|SVA	-11388	NR_106895	102465503		NR_106895	ENSG00000284047	MIR6836	hsa-mir-6836	microRNA 6836	ncRNA
185273	chr5	124951751	124952250	+	0	NA	Intergenic	MER57B2|LTR|ERV1	-84831	NR_109882	101927421		NR_109882		LOC101927421	-	uncharacterized LOC101927421	ncRNA
161970	chr3	46289351	46289850	+	0	NA	Intergenic	Intergenic	47140	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
145741	chr20	45092571	45092930	+	0	NA	3' UTR (NM_001322799, exon 4 of 4)	3' UTR (NM_001322799, exon 4 of 4)	8377	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
233142	chr9	137159871	137160480	+	0	NA	intron (NM_007327, intron 8 of 19)	intron (NM_007327, intron 8 of 19)	9095	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
155740	chr22	39151121	39151800	+	0	NA	intron (NM_001346743, intron 1 of 5)	MIR3|SINE|MIR	1220	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
211545	chr7	105443451	105443780	+	0	NA	Intergenic	AluSx1|SINE|Alu	-54225	NM_001350740	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
69882	chr14	99332701	99332900	+	0	NA	Intergenic	Intergenic	-60603	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
3908	chr1	17237051	17237350	+	0	NA	intron (NM_013358, intron 11 of 15).2	intron (NM_013358, intron 11 of 15).2	-11898	NM_016233	51702		NM_016233	ENSG00000142619	PADI3	PAD3|PDI3|UHS1	peptidyl arginine deiminase 3	protein-coding
57026	chr12	120680801	120681000	+	0	NA	Intergenic	AluJb|SINE|Alu	-6249	NM_014730	9761		NM_014730	ENSG00000110917	MLEC	KIAA0152	malectin	protein-coding
125109	chr2	9756801	9757000	+	0	NA	Intergenic	Intergenic	-86542	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
87466	chr16	71537751	71537930	+	0	NA	3' UTR (NM_005769, exon 2 of 2)	3' UTR (NM_005769, exon 2 of 2)	11414	NM_001166395	10164		NM_005769	ENSG00000140835	CHST4	GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST	carbohydrate sulfotransferase 4	protein-coding
206857	chr7	37440321	37441430	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	8077	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
86263	chr16	58494951	58495750	+	0	NA	intron (NM_022910, intron 3 of 15)	intron (NM_022910, intron 3 of 15)	-4793	NR_040072	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
71815	chr15	22099001	22099780	+	0	NA	Intergenic	L1P4b|LINE|L1	4959	NM_001005241	283694		NM_001005241	ENSG00000183706	OR4N4	OR15-1|OR15-5	olfactory receptor family 4 subfamily N member 4	protein-coding
136859	chr2	186503871	186504430	+	0	NA	exon (NM_018471, exon 6 of 10)	exon (NM_018471, exon 6 of 10)	17890	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
93955	chr17	21449971	21450130	+	0	NA	Intergenic	Intergenic	73693	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
175135	chr4	55362001	55362200	+	0	NA	intron (NM_024592, intron 2 of 4)	L1ME3A|LINE|L1	15858	NM_024592	79644		NM_024592	ENSG00000128039	SRD5A3	CDG1P|CDG1Q|KRIZI|S5AR|S5AR 3|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
66341	chr14	61441021	61441700	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	119917	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
185540	chr5	131351901	131352300	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1ME1|LINE|L1	88047	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
222469	chr8	140057551	140057950	+	0	NA	intron (NR_164662, intron 16 of 22)	L1MB1|LINE|L1	42785	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
29982	chr10	73742121	73742400	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2112	NM_004922	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
45500	chr11	118640871	118641230	+	0	NA	intron (NM_001144759, intron 12 of 20)	intron (NM_001144759, intron 12 of 20)	-2950	NR_106773	102466719		NR_106773	ENSG00000284246	MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
193770	chr6	31358001	31360000	+	0	NA	Intergenic	L1M4a1|LINE|L1	-1821	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
70247	chr14	101560201	101560400	+	0	NA	TTS (NR_031649)	TTS (NR_031649)	122	NR_152590	64150		NM_022345	ENSG00000258498	DIO3OS	C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041	DIO3 opposite strand upstream RNA	ncRNA
228593	chr9	104970871	104971350	+	0	NA	Intergenic	AluJb|SINE|Alu	-42955	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
233393	chr9	137549801	137550800	+	0	NA	5' UTR (NM_152286, exon 1 of 34)	5' UTR (NM_152286, exon 1 of 34)	102	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
60043	chr13	32738571	32738800	+	0	NA	intron (NM_015032, intron 21 of 34)	AluSx1|SINE|Alu	152233	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
10468	chr1	66335151	66336700	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	3817	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
180420	chr5	10421071	10421230	+	0	NA	intron (NM_001270660, intron 21 of 24)	intron (NM_001270660, intron 21 of 24)	18786	NR_162106	113218502		NR_162106		MIR10397	-	microRNA 10397	ncRNA
166617	chr3	119443221	119443680	+	0	NA	intron (NR_073506, intron 6 of 9)	Tigger1|DNA|TcMar-Tigger	20165	NR_073506	55254		NM_018266	ENSG00000176142	TMEM39A	SUSR2	transmembrane protein 39A	protein-coding
211827	chr7	108454251	108455600	+	0	NA	intron (NM_001371128, intron 1 of 31)	intron (NM_001371128, intron 1 of 31)	1472	NM_005010	4897		NM_005010	ENSG00000091129	NRCAM	NEDNMS	neuronal cell adhesion molecule	protein-coding
169764	chr3	172591171	172591330	+	0	NA	intron (NR_146714, intron 2 of 3)	L1PREC2|LINE|L1	4357	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
163679	chr3	52237371	52237800	+	0	NA	intron (NM_007284, intron 1 of 8)	intron (NM_007284, intron 1 of 8)	1573	NM_007284	11344		NM_007284	ENSG00000247596	TWF2	A6RP|A6r|MSTP011|PTK9L	twinfilin actin binding protein 2	protein-coding
10100	chr1	58944621	58944880	+	0	NA	Intergenic	L2c|LINE|L2	-75726	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
225867	chr9	38424021	38424480	+	0	NA	exon (NM_001007563, exon 1 of 5)	exon (NM_001007563, exon 1 of 5)	204	NM_001007563	347252		NM_001007563	ENSG00000137142	IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin like growth factor binding protein like 1	protein-coding
74555	chr15	60523901	60524800	+	0	NA	intron (NR_120339, intron 4 of 5)	L2c|LINE|L2	45172	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
199584	chr6	119080171	119080530	+	0	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	-1686	NM_024581	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
168542	chr3	146396901	146397100	+	0	NA	Intergenic	L2|LINE|L2	72301	NM_001199978	57047		NM_020359	ENSG00000163746	PLSCR2	-	phospholipid scramblase 2	protein-coding
208326	chr7	66154271	66154650	+	0	NA	non-coding (NR_024548, exon 7 of 7)	non-coding (NR_024548, exon 7 of 7)	39613	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
196569	chr6	44129351	44129750	+	0	NA	intron (NM_018426, intron 1 of 23)	intron (NM_018426, intron 1 of 23)	1996	NM_018426	55362		NM_018426	ENSG00000137216	TMEM63B	C6orf110	transmembrane protein 63B	protein-coding
29791	chr10	72280401	72280700	+	0	NA	Intergenic	Intergenic	6626	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
176387	chr4	88659321	88659630	+	0	NA	intron (NM_001375479, intron 11 of 25)	intron (NM_001375479, intron 11 of 25)	38354	NM_153757	266812		NM_153757	ENSG00000177432	NAP1L5	DRLM	nucleosome assembly protein 1 like 5	protein-coding
99986	chr17	57692521	57692780	+	0	NA	Intergenic	L1ME1|LINE|L1	52649	NM_001282544	101927581		NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
142650	chr20	5804251	5804750	+	0	NA	intron (NM_001303478, intron 3 of 3)	intron (NM_001303478, intron 3 of 3)	54099	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
231046	chr9	129624001	129624600	+	0	NA	intron (NM_001286797, intron 1 of 3)	intron (NM_001286797, intron 1 of 3)	-1853	NM_001286798	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
116256	chr19	17610321	17610880	+	0	NA	intron (NM_001080421, intron 40 of 41)	MLT1J|LTR|ERVL-MaLR	54951	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
152901	chr22	22745721	22746380	+	0	NA	Intergenic	Intergenic	-76726	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
64943	chr14	35812871	35813430	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-3855	NM_014990	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
65038	chr14	39182451	39182750	+	0	NA	3' UTR (NM_002687, exon 9 of 9)	3' UTR (NM_002687, exon 9 of 9)	7346	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
170168	chr3	183608751	183609000	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-26748	NM_001349420	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
23471	chr1	228617721	228618130	+	0	NA	promoter-TSS (NR_023363).4	promoter-TSS (NR_023363).4	-816	NR_023367	100169756		NR_023367	ENSG00000199396	RNA5S5	RN5S5	RNA, 5S ribosomal 5	rRNA
166789	chr3	122513621	122514400	+	0	NA	intron (NM_002264, intron 1 of 13)	intron (NM_002264, intron 1 of 13)	929	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
79831	chr16	1435871	1436030	+	0	NA	intron (NM_001143980, intron 14 of 16)	intron (NM_001143980, intron 14 of 16)	4872	NM_001365310	105371045		NM_001365310	ENSG00000284395	PERCC1	DIAR11|ICR|gs104	proline and glutamate rich with coiled coil 1	protein-coding
196680	chr6	44655101	44655800	+	0	NA	Intergenic	Intergenic	-103569	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
160290	chr3	27354171	27354330	+	0	NA	intron (NM_199347, intron 2 of 24)	intron (NM_199347, intron 2 of 24)	15133	NM_199347	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
184732	chr5	109688471	109690400	+	0	NA	promoter-TSS (NM_002372)	promoter-TSS (NM_002372)	69	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
82756	chr16	21420021	21420280	+	0	NA	intron (NM_130464, intron 2 of 12)	intron (NM_130464, intron 2 of 12)	5228	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
142900	chr20	17965451	17966500	+	0	NA	intron (NM_001282454, intron 1 of 12)	intron (NM_001282454, intron 1 of 12)	2819	NM_152227	27131		NM_014426	ENSG00000089006	SNX5	-	sorting nexin 5	protein-coding
85698	chr16	56519401	56520650	+	0	NA	promoter-TSS (NM_031885)	promoter-TSS (NM_031885)	-1	NM_001377456	583		NM_031885	ENSG00000125124	BBS2	BBS|RP74	Bardet-Biedl syndrome 2	protein-coding
44528	chr11	107857201	107857400	+	0	NA	intron (NM_017515, intron 1 of 7)	GA-rich|Low_complexity|Low_complexity	1487	NM_017515	54733		NM_017515	ENSG00000110660	SLC35F2	HSNOV1	solute carrier family 35 member F2	protein-coding
79138	chr16	232571	232730	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1896	NR_104317	83986		NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding
78264	chr15	90839601	90840000	+	0	NA	Intergenic	Intergenic	-28788	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
152651	chr22	21563121	21563780	+	0	NA	intron (NM_001256355, intron 1 of 3)	AluY|SINE|Alu	-4097	NM_001256356	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
39003	chr11	47720301	47720700	+	0	NA	intron (NM_015308, intron 15 of 16)	AluYm1|SINE|Alu	-5131	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
169663	chr3	171559671	171559900	+	0	NA	Intergenic	Intergenic	-99377	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
183252	chr5	76415621	76415880	+	0	NA	intron (NM_006633, intron 1 of 35)	AluSz|SINE|Alu	12465	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
234625	chrX	19864751	19865250	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	22600	NM_001353891	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
121895	chr19	48369771	48370130	+	0	NA	intron (NM_012451, intron 2 of 4)	MIRc|SINE|MIR	5583	NM_012451	23546		NM_012451	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding
113434	chr19	9806951	9807430	+	0	NA	Intergenic	AluSz|SINE|Alu	11889	NM_001316938	54850		NM_017703	ENSG00000127452	FBXL12	Fbl12	F-box and leucine rich repeat protein 12	protein-coding
152219	chr22	20137021	20137750	+	0	NA	intron (NM_001185024, intron 1 of 10)	(CAGG)n|Simple_repeat|Simple_repeat	5581	NM_013373	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
83641	chr16	28301001	28301330	+	0	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	8640	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
112299	chr19	5865801	5866200	+	0	NA	3' UTR (NM_002034, exon 2 of 2)	3' UTR (NM_002034, exon 2 of 2)	4540	NM_002034	2527		NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding
176155	chr4	83217201	83218530	+	0	NA	Intergenic	Intergenic	66933	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
36316	chr11	3861801	3862080	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	5878	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
22228	chr1	212568071	212568230	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	2816	NM_001030287	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
90578	chr17	1558701	1558900	+	0	NA	intron (NM_006224, intron 1 of 11)	intron (NM_006224, intron 1 of 11)	3992	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
120942	chr19	45679521	45680630	+	0	NA	intron (NM_000164, intron 12 of 13)	AluJr|SINE|Alu	-5067	NR_037512	100500845		NR_037512	ENSG00000283212	MIR642B	mir-642b	microRNA 642b	ncRNA
77475	chr15	84516301	84516830	+	0	NA	intron (NM_001267536, intron 1 of 10)	intron (NM_001267536, intron 1 of 10)	282	NM_001267536	643707		NM_001267536	ENSG00000184206	GOLGA6L4	-	golgin A6 family like 4	protein-coding
154584	chr22	36273571	36274330	+	0	NA	Intergenic	Intergenic	12957	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
108697	chr18	77058151	77058630	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-41335	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
135765	chr2	169679371	169679530	+	0	NA	intron (NM_001085447, intron 2 of 8)	AluYm1|SINE|Alu	14955	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
4905	chr1	23825051	23826530	+	0	NA	promoter-TSS (NM_000191)	promoter-TSS (NM_000191)	-331	NM_001166059	3155		NM_000191	ENSG00000117305	HMGCL	HL|HMGCL1	3-hydroxy-3-methylglutaryl-CoA lyase	protein-coding
177745	chr4	122534251	122534550	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-77675	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
238699	chrX	154083151	154083880	+	0	NA	intron (NM_001316337, intron 2 of 4)	Charlie10b|DNA|hAT-Charlie	13454	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
50220	chr12	46224071	46224780	+	0	NA	intron (NM_001278387, intron 6 of 17)	intron (NM_001278387, intron 6 of 17)	42091	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
58843	chr12	132885751	132886300	+	0	NA	intron (NM_018223, intron 2 of 17)	intron (NM_018223, intron 2 of 17)	1580	NM_001161346	55743		NM_018223	ENSG00000072609	CHFR	RNF116|RNF196	checkpoint with forkhead and ring finger domains	protein-coding
77323	chr15	82470501	82470930	+	0	NA	TTS (NR_026811)	TTS (NR_026811)	-25846	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
44467	chr11	104970271	104970430	+	0	NA	Intergenic	L1PA10|LINE|L1	-1776	NM_033306	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
98760	chr17	48106021	48106380	+	0	NA	Intergenic	AluJb|SINE|Alu	-1333	NM_001330320	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
239216	chrY	12929471	12929830	+	0	NA	Intergenic	Intergenic	23945	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
200435	chr6	135021501	135021900	+	0	NA	intron (NM_001363686, intron 4 of 18)	intron (NM_001363686, intron 4 of 18)	33122	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
168373	chr3	141904821	141905280	+	0	NA	intron (NM_001679, intron 2 of 6)	intron (NM_001679, intron 2 of 6)	28407	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
76085	chr15	72485451	72485830	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	11310	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
217194	chr8	26323601	26324100	+	0	NA	intron (NM_002717, intron 2 of 9)	MER21B|LTR|ERVL	30634	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
30697	chr10	80532001	80532200	+	0	NA	intron (NR_120661, intron 1 of 1)	MLT1F|LTR|ERVL-MaLR	3842	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
74653	chr15	60907321	60907780	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	225981	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
116103	chr19	17292071	17293200	+	0	NA	3' UTR (NM_024527, exon 5 of 5)	3' UTR (NM_024527, exon 5 of 5)	-10230	NM_001382342	64981		NM_023937	ENSG00000130312	MRPL34	L34mt|bL34m	mitochondrial ribosomal protein L34	protein-coding
171774	chr4	121101	122280	+	0	NA	Intergenic	LTR77|LTR|ERV1	-2786	NM_001289930	255403		NM_153691	ENSG00000250312	ZNF718	-	zinc finger protein 718	protein-coding
91963	chr17	7388951	7390000	+	0	NA	TTS (NM_001369422)	TTS (NM_001369422)	5050	NM_020360	57048		NM_020360	ENSG00000187838	PLSCR3	-	phospholipid scramblase 3	protein-coding
25482	chr10	6958201	6958730	+	0	NA	Intergenic	Intergenic	178867	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
98795	chr17	48238771	48239130	+	0	NA	intron (NM_001075099, intron 4 of 12)	MIR1_Amn|SINE|MIR	-55397	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
231797	chr9	132357701	132357900	+	0	NA	Intergenic	AluSx|SINE|Alu	-2814	NM_015046	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
26211	chr10	14568071	14568650	+	0	NA	intron (NM_001320736, intron 1 of 4)	intron (NM_001320736, intron 1 of 4)	3639	NM_001320736	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
57582	chr12	122356221	122357080	+	0	NA	intron (NM_001247997, intron 5 of 25)	SVA_D|Retroposon|SVA	-38892	NR_045382	100507066		NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
205468	chr7	17301271	17302030	+	0	NA	intron (NM_001621, intron 1 of 10)	intron (NM_001621, intron 1 of 10)	2998	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
101799	chr17	73234571	73234730	+	0	NA	intron (NR_110105, intron 2 of 4)	AluSc|SINE|Alu	1989	NM_001100622	55028		NM_017941	ENSG00000141219	MTNAP1	C17orf80|HLC-8|MIG3|SPEP1	mitochondrial nucleoid associated protein 1	protein-coding
10527	chr1	66951171	66951530	+	0	NA	intron (NM_001077702, intron 5 of 15)	AluJo|SINE|Alu	21094	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
130738	chr2	86787601	86788500	+	0	NA	intron (NR_168479, intron 2 of 2)	intron (NR_168479, intron 2 of 2)	2863	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
88931	chr16	87830021	87830380	+	0	NA	3' UTR (NM_003486, exon 10 of 10)	3' UTR (NM_003486, exon 10 of 10)	4460	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
51170	chr12	50214651	50214750	+	0	NA	intron (NM_001113547, intron 1 of 7)	AluSg|SINE|Alu	7958	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
115236	chr19	14512001	14512690	+	0	NA	Intergenic	AluJr|SINE|Alu	5517	NM_001300914	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
214400	chr7	149791471	149791630	+	0	NA	non-coding (NR_163594, exon 33 of 103)	non-coding (NR_163594, exon 33 of 103)	15508	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
49223	chr12	19125271	19125950	+	0	NA	Intergenic	Intergenic	-4123	NM_019012	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
220049	chr8	93700221	93700880	+	0	NA	promoter-TSS (NM_001283034)	promoter-TSS (NM_001283034)	0	NM_001283034	137392		NM_145269	ENSG00000188343	CIBAR1	BARMR1|FAM92A|FAM92A1|PAPA9	CBY1 interacting BAR domain containing 1	protein-coding
56999	chr12	120574651	120575050	+	0	NA	intron (NM_001330474, intron 14 of 16)	AluSp|SINE|Alu	6548	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
160143	chr3	20065801	20066000	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	25454	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
117944	chr19	33225551	33226250	+	0	NA	promoter-TSS (NM_019849)	promoter-TSS (NM_019849)	-50	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
132868	chr2	111115901	111116380	+	0	NA	promoter-TSS (NR_122074)	promoter-TSS (NR_122074)	-552	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
1717	chr1	5640851	5640950	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	221841	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
146949	chr20	52150671	52150900	+	0	NA	TTS (NM_018197)	TTS (NM_018197)	40994	NM_199426	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
13296	chr1	113075301	113075930	+	0	NA	intron (NM_014813, intron 1 of 17)	intron (NM_014813, intron 1 of 17)	2417	NM_014813	9860		NM_014813	ENSG00000198799	LRIG2	LIG-2|LIG2|UFS2	leucine rich repeats and immunoglobulin like domains 2	protein-coding
181309	chr5	40276821	40277780	+	0	NA	Intergenic	MIRb|SINE|MIR	225009	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
171673	chr3	197715421	197715680	+	0	NA	intron (NM_014687, intron 2 of 19)	MIR|SINE|MIR	21354	NM_014687	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
95486	chr17	36214721	36215400	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	3997	NR_111970	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
170576	chr3	186823151	186823650	+	0	NA	intron (NR_125409, intron 3 of 3)	AluSx1|SINE|Alu	2121	NR_125409	102724699		NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
45127	chr11	117185371	117186030	+	0	NA	intron (NM_001040455, intron 8 of 25)	AluJr|SINE|Alu	6957	NM_001040455	51092		NM_015996	ENSG00000149577	SIDT2	CGI-40	SID1 transmembrane family member 2	protein-coding
179648	chr4	189233921	189234180	+	0	NA	Intergenic	Intergenic	-425556	NR_121679	101928971		NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
57318	chr12	121677901	121678300	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-5456	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
111975	chr19	4866421	4867100	+	0	NA	intron (NM_005817, intron 1 of 7)	intron (NM_005817, intron 1 of 7)	907	NM_001164194	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
127641	chr2	43141171	43141530	+	0	NA	Intergenic	AluJb|SINE|Alu	-38905	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
220192	chr8	95271051	95271150	+	0	NA	intron (NR_038206, intron 1 of 4)	intron (NR_038206, intron 1 of 4)	-1899	NM_177965	157657		NM_177965	ENSG00000156172	CFAP418	BBS21|C8orf37|CORD16|FAP418|MOT25|RP64|smalltalk	cilia and flagella associated protein 418	protein-coding
63462	chr13	114134121	114135130	+	0	NA	Intergenic	Intergenic	-2002	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
139386	chr2	221726421	221726680	+	0	NA	Intergenic	L1M2|LINE|L1	-152348	NM_001304536	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
74334	chr15	58515721	58516030	+	0	NA	intron (NM_000236, intron 1 of 8)	L2b|LINE|L2	-17140	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
220343	chr8	99097701	99098100	+	0	NA	intron (NM_152564, intron 4 of 61)	L1M5|LINE|L1	84626	NM_015243	157680		NM_015243	ENSG00000132549	VPS13B	BLTP5B|CHS1|COH1	vacuolar protein sorting 13 homolog B	protein-coding
205496	chr7	17939501	17941080	+	0	NA	exon (NM_001350870, exon 1 of 6)	exon (NM_001350870, exon 1 of 6)	204	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
191523	chr6	11367591	11368150	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	14478	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
37612	chr11	20155221	20155480	+	0	NA	TTS (NM_001029865)	TTS (NM_001029865)	5125	NM_001029865	120237		NM_001029865	ENSG00000109851	DBX1	HLX1	developing brain homeobox 1	protein-coding
73078	chr15	40927551	40928250	+	0	NA	Intergenic	CpG	-1440	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
190626	chr5	181201551	181202250	+	0	NA	promoter-TSS (NM_203297)	promoter-TSS (NM_203297)	-970	NM_203297	81786		NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
65705	chr14	52789171	52789630	+	0	NA	intron (NM_198066, intron 1 of 5)	intron (NM_198066, intron 1 of 5)	2207	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
185018	chr5	115377621	115377880	+	0	NA	Intergenic	Intergenic	-81096	NM_001375899	153733		NM_152549	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
226458	chr9	71720151	71720450	+	0	NA	intron (NM_001135820, intron 11 of 22)	AluSx1|SINE|Alu	48213	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
12231	chr1	100417901	100418330	+	0	NA	intron (NM_001319210, intron 4 of 16)	MIR|SINE|MIR	65609	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
222045	chr8	130247421	130247940	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	48853	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
220227	chr8	96316151	96316250	+	0	NA	intron (NM_014754, intron 9 of 12)	L2|LINE|L2	54298	NM_014754	9791		NM_014754	ENSG00000156471	PTDSS1	LMHD|PSS1|PSSA	phosphatidylserine synthase 1	protein-coding
158	chr1	586131	586400	+	0	NA	Intergenic	Intergenic	42744	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
46208	chr11	123576901	123577350	+	0	NA	intron (NM_001286564, intron 1 of 19)	intron (NM_001286564, intron 1 of 19)	16863	NM_001286564	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
160392	chr3	28050021	28050380	+	0	NA	Intergenic	L1ME1|LINE|L1	-191419	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
132896	chr2	111374821	111375080	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	-53859	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
23370	chr1	228164321	228164580	+	0	NA	non-coding (NR_103539, exon 2 of 2)	non-coding (NR_103539, exon 2 of 2)	398	NR_103539	574432		NR_103539	ENSG00000203684	IBA57-DT	C1orf148|IBA57-AS1	IBA57 divergent transcript	ncRNA
117022	chr19	18918841	18920250	+	0	NA	promoter-TSS (NR_033677)	promoter-TSS (NR_033677)	-158	NM_199442	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
181003	chr5	35830471	35831680	+	0	NA	Intergenic	Intergenic	-25816	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
219819	chr8	81641521	81642000	+	0	NA	Intergenic	Intergenic	-10483	NR_146081	650747		NR_146081		IMPA1P1	IMPA1P	inositol monophosphatase 1 pseudogene 1	pseudo
80753	chr16	3155071	3155650	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	11069	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
102108	chr17	75006621	75006950	+	0	NA	TTS (NM_014603)	TTS (NM_014603)	-5885	NM_001303265	3396		NM_001545	ENSG00000167862	MRPL58	DS-1|DS1|ICT1|MRP-L58|mL62	mitochondrial ribosomal protein L58	protein-coding
184683	chr5	108558671	108558830	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	169511	NR_046368	100652853		NR_046368		LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
199532	chr6	118768601	118769330	+	0	NA	Intergenic	Intergenic	-13743	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
183350	chr5	76855821	76856330	+	0	NA	intron (NM_130772, intron 1 of 4)	MSTA|LTR|ERVL-MaLR	6061	NM_130772	170591		NM_130772	ENSG00000171643	S100Z	Gm625|S100-zeta	S100 calcium binding protein Z	protein-coding
97707	chr17	44328771	44328930	+	0	NA	Intergenic	Intergenic	-3980	NM_001321240	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
110295	chr19	1833021	1833280	+	0	NA	intron (NM_020695, intron 1 of 15)	AluJo|SINE|Alu	11061	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
150215	chr21	39444721	39446080	+	0	NA	promoter-TSS (NM_001317741)	promoter-TSS (NM_001317741)	378	NM_001384295	150082		NM_152505	ENSG00000157578	LCA5L	C21orf13	lebercilin LCA5 like	protein-coding
62046	chr13	91313851	91313950	+	0	NA	Intergenic	Intergenic	-33920	NR_027349	407975		NM_213723	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA
147131	chr20	54194751	54194850	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-13287	NM_002623	5203		NM_002623	ENSG00000101132	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding
45099	chr11	117090401	117091030	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	7713	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
179960	chr5	787551	788250	+	0	NA	Intergenic	Intergenic	-3171	NM_001351303	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
41091	chr11	65527721	65528300	+	0	NA	intron (NM_020680, intron 6 of 17)	intron (NM_020680, intron 6 of 17)	2927	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
103746	chr17	78916151	78916850	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	8887	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
186486	chr5	138177101	138177300	+	0	NA	intron (NM_006696, intron 2 of 21)	AluSc|SINE|Alu	1430	NM_001300962	10902		NM_006696	ENSG00000112983	BRD8	SMAP|SMAP2|p120	bromodomain containing 8	protein-coding
173288	chr4	7065201	7066230	+	0	NA	intron (NM_025196, intron 1 of 3)	L2c|LINE|L2	2349	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
172321	chr4	1671101	1671300	+	0	NA	intron (NM_001174070, intron 1 of 4)	intron (NM_001174070, intron 1 of 4)	12791	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
93729	chr17	19645901	19646580	+	0	NA	Intergenic	AluJo|SINE|Alu	-1910	NM_001369137	224		NM_000382	ENSG00000072210	ALDH3A2	ALDH10|FALDH|SLS	aldehyde dehydrogenase 3 family member A2	protein-coding
192558	chr6	25370651	25371180	+	0	NA	intron (NM_001173977, intron 2 of 36)	L1PB3|LINE|L1	91541	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
202439	chr6	157990251	157990980	+	0	NA	intron (NM_003898, intron 1 of 26)	intron (NM_003898, intron 1 of 26)	8752	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
132437	chr2	105839271	105839630	+	0	NA	intron (NM_001004722, intron 2 of 3)	L2a|LINE|L2	-12397	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
87855	chr16	77169671	77169980	+	0	NA	Intergenic	Intergenic	-21365	NM_014940	22879		NM_014940	ENSG00000103111	MON1B	HSRG1|SAND2|SRG1	MON1 homolog B, secretory trafficking associated	protein-coding
165981	chr3	108081671	108082030	+	0	NA	intron (NM_198793, intron 1 of 8)	intron (NM_198793, intron 1 of 8)	9181	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
174541	chr4	40199901	40200700	+	0	NA	intron (NM_001278365, intron 2 of 3)	intron (NM_001278365, intron 2 of 3)	3269	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
184784	chr5	110757051	110757420	+	0	NA	intron (NM_001303249, intron 7 of 7)	intron (NM_001303249, intron 7 of 7)	18228	NM_138773	91137		NM_138773	ENSG00000164209	SLC25A46	HMSN6B|PCH1E	solute carrier family 25 member 46	protein-coding
61154	chr13	48829171	48829880	+	0	NA	Intergenic	Intergenic	-146387	NM_001079673	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
66440	chr14	61536151	61536250	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	33994	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
146588	chr20	50108271	50109030	+	0	NA	intron (NM_001257399, intron 1 of 4)	MIRb|SINE|MIR	4500	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
52934	chr12	57429201	57429580	+	0	NA	intron (NM_001351207, intron 1 of 26)	intron (NM_001351207, intron 1 of 26)	1653	NM_001351212	22864		NM_014925	ENSG00000179912	R3HDM2	CAG6|PR01365	R3H domain containing 2	protein-coding
237008	chrX	102339271	102339800	+	0	NA	Intergenic	MER52A|LTR|ERV1	92368	NM_022053	56001		NM_017809	ENSG00000269405	NXF2	CT39|TAPL-2|TCP11X2	nuclear RNA export factor 2	protein-coding
157130	chr22	42785671	42785830	+	0	NA	Intergenic	Intergenic	-64449	NM_001318038	53947		NM_017436	ENSG00000128274	A4GALT	A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK	alpha 1,4-galactosyltransferase (P1PK blood group)	protein-coding
135839	chr2	170715071	170715980	+	0	NA	promoter-TSS (NR_027433)	promoter-TSS (NR_027433)	188	NM_001003845	389058		NM_001003845	ENSG00000204335	SP5	-	Sp5 transcription factor	protein-coding
205837	chr7	24894871	24895030	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	-2329	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
228173	chr9	97237901	97239130	+	0	NA	promoter-TSS (NR_036526)	promoter-TSS (NR_036526)	89	NR_036528	57653		NR_036527	ENSG00000255036	SUGT1P4-STRA6LP-CCDC180	LOC100499484-C9ORF174	SUGT1P4-STRA6LP-CCDC180 readthrough	ncRNA
217929	chr8	38078271	38078430	+	0	NA	Intergenic	L2a|LINE|L2	-27143	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
9842	chr1	54227201	54227680	+	0	NA	intron (NM_145716, intron 17 of 17)	intron (NM_145716, intron 17 of 17)	-9003	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
113482	chr19	10008051	10008150	+	0	NA	intron (NM_015719, intron 1 of 66)	intron (NM_015719, intron 1 of 66)	2404	NM_015719	50509		NM_015719	ENSG00000080573	COL5A3	-	collagen type V alpha 3 chain	protein-coding
168079	chr3	138175651	138176030	+	0	NA	promoter-TSS (NM_016216)	promoter-TSS (NM_016216)	-919	NM_016216	51163		NM_016216	ENSG00000138231	DBR1	XGIP	debranching RNA lariats 1	protein-coding
120024	chr19	41947171	41947730	+	0	NA	Intergenic	AluJb|SINE|Alu	11871	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
197758	chr6	87213321	87213680	+	0	NA	intron (NM_015021, intron 1 of 7)	LTR10A|LTR|ERV1	57935	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
37957	chr11	34599621	34600280	+	0	NA	Intergenic	Intergenic	-21143	NM_001378042	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
172827	chr4	3106051	3106880	+	0	NA	intron (NM_002111, intron 5 of 66)	intron (NM_002111, intron 5 of 66)	31784	NM_002111	3064		NM_002111	ENSG00000197386	HTT	HD|IT15|LOMARS	huntingtin	protein-coding
215587	chr7	158858001	158858280	+	0	NA	intron (NM_001350917, intron 1 of 25)	HAL1ME|LINE|L1	1582	NM_001350917	55112		NM_018051	ENSG00000126870	DYNC2I1	CFAP163|DIC6|FAP163|SRPS6|SRTD8|WDR60	dynein 2 intermediate chain 1	protein-coding
95295	chr17	35532201	35532700	+	0	NA	intron (NM_001363830, intron 1 of 4)	AluSx|SINE|Alu	5411	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
170549	chr3	186781301	186782000	+	0	NA	Intergenic	Intergenic	-1927	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
84986	chr16	31459001	31460300	+	0	NA	exon (NM_001301820, exon 2 of 7)	exon (NM_001301820, exon 2 of 7)	149	NM_001105247	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
24457	chr1	243845401	243846150	+	0	NA	intron (NM_001370074, intron 1 of 13)	intron (NM_001370074, intron 1 of 13)	-2191	NM_001206729	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
196148	chr6	42446121	42446380	+	0	NA	intron (NM_033502, intron 2 of 17)	L2a|LINE|L2	5801	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
238970	chrX	155373751	155374230	+	0	NA	non-coding (NR_039991, exon 1 of 4)	non-coding (NR_039991, exon 1 of 4)	184	NR_109985	101927830		NR_109985		LOC101927830	-	uncharacterized LOC101927830	ncRNA
2906	chr1	11678051	11678350	+	0	NA	intron (NM_006341, intron 3 of 8)	AluSx1|SINE|Alu	2948	NM_006341	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
13485	chr1	114715271	114715430	+	0	NA	intron (NM_002524, intron 2 of 6)	intron (NM_002524, intron 2 of 6)	1421	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
138018	chr2	201274571	201274730	+	0	NA	intron (NM_033358, intron 6 of 7)	AluSx1|SINE|Alu	14114	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
134958	chr2	151843251	151843350	+	0	NA	intron (NM_000726, intron 12 of 13)	intron (NM_000726, intron 12 of 13)	-14879	NM_001037174	26225		NM_012097	ENSG00000162980	ARL5A	ARFLP5|ARL5	ADP ribosylation factor like GTPase 5A	protein-coding
130390	chr2	85315271	85315630	+	0	NA	Intergenic	Intergenic	12539	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
146976	chr20	52974201	52974600	+	0	NA	intron (NM_173485, intron 1 of 2)	intron (NM_173485, intron 1 of 2)	2042	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
204890	chr7	6060321	6060780	+	0	NA	Intergenic	Intergenic	-1321	NM_001134335	27102		NM_014413	ENSG00000086232	EIF2AK1	HCR|HRI|LEMSPAD|hHRI	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
158472	chr22	50705301	50705580	+	0	NA	intron (NM_001372044, intron 18 of 23)	intron (NM_001372044, intron 18 of 23)	32617	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
220076	chr8	93983101	93983380	+	0	NA	Intergenic	Intergenic	66293	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
92343	chr17	8169851	8170150	+	0	NA	Intergenic	AluJr|SINE|Alu	3588	NR_033294	727676		NR_033294	ENSG00000200463	SNORD118	LCC|U8	small nucleolar RNA, C/D box 118	snoRNA
175429	chr4	71017801	71018980	+	0	NA	intron (NM_000788, intron 2 of 6)	AluY|SINE|Alu	24741	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
20035	chr1	185319071	185319330	+	0	NA	Intergenic	MER44D|DNA|TcMar-Tigger	-1957	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
81123	chr16	4385171	4385330	+	0	NA	intron (NM_001351729, intron 9 of 27)	intron (NM_001351729, intron 9 of 27)	13402	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
205331	chr7	12556471	12556630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14170	NM_001112706	85477		NM_033128	ENSG00000006747	SCIN	-	scinderin	protein-coding
95260	chr17	35486521	35487600	+	0	NA	intron (NM_001363830, intron 2 of 4)	intron (NM_001363830, intron 2 of 4)	679	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
131088	chr2	89213351	89213450	+	0	NA	Intergenic	Intergenic	372265	NR_160761	107985911		NR_160761	ENSG00000290846	LOC107985911	-	lymphocyte specific protein 1 pseudogene	pseudo
6159	chr1	27403151	27404350	+	0	NA	TTS (NM_001201404)	TTS (NM_001201404)	11128	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
154036	chr22	30475021	30475780	+	0	NA	Intergenic	Intergenic	-3383	NM_001257378	266629		NM_174975	ENSG00000100012	SEC14L3	TAP2	SEC14 like lipid binding 3	protein-coding
125550	chr2	15588471	15588630	+	0	NA	Intergenic	Intergenic	-3318	NM_004939	1653		NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding
205004	chr7	6464971	6465130	+	0	NA	intron (NM_001100603, intron 3 of 3)	intron (NM_001100603, intron 3 of 3)	-17038	NM_001142936	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
187219	chr5	140712421	140712830	+	0	NA	Intergenic	AluSq2|SINE|Alu	1349	NR_026703	56664		NR_026703	ENSG00000199990	VTRNA1-1	HVG1|VAULTRC1|VR1|hvg-1|vRNA	vault RNA 1-1	ncRNA
184266	chr5	96719851	96720030	+	0	NA	intron (NM_173060, intron 1 of 28)	L2a|LINE|L2	17280	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
134608	chr2	144381851	144382200	+	0	NA	Intergenic	Intergenic	-48956	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
123242	chr19	53132401	53132800	+	0	NA	intron (NM_001352146, intron 1 of 4)	CpG	320	NM_001136038	55786		NM_018355	ENSG00000170954	ZNF415	Pact|ZfLp	zinc finger protein 415	protein-coding
199905	chr6	127864751	127865250	+	0	NA	intron (NM_001164687, intron 1 of 5).2	MER77|LTR|ERVL	-9812	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
80086	chr16	2000951	2001850	+	0	NA	intron (NM_178167, intron 8 of 13)	intron (NM_178167, intron 8 of 13)	8421	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
81788	chr16	11530621	11531150	+	0	NA	Intergenic	Intergenic	-3638	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
72265	chr15	30628051	30628650	+	0	NA	intron (NM_001039841, intron 1 of 6)	AluY|SINE|Alu	2202	NR_148423	89839		NM_001039841	ENSG00000285077	ARHGAP11B	B'-T|FAM7B1|GAP (1-8)	Rho GTPase activating protein 11B	protein-coding
105207	chr17	82324701	82324900	+	0	NA	exon (NM_003004, exon 3 of 5)	exon (NM_003004, exon 3 of 5)	-7192	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
235209	chrX	41357371	41357530	+	0	NA	intron (NR_126093, intron 17 of 18)	L1MD2|LINE|L1	23284	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
77093	chr15	78918301	78918700	+	0	NA	Intergenic	AluSx|SINE|Alu	26546	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
67297	chr14	69484971	69485130	+	0	NA	exon (NM_001161498, exon 1 of 13)	exon (NM_001161498, exon 1 of 13)	322	NM_001161498	400224		NM_001161498	ENSG00000175985	PLEKHD1	UPF0639	pleckstrin homology and coiled-coil domain containing D1	protein-coding
19305	chr1	173160551	173160650	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	44932	NM_001297562	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
58419	chr12	131920751	131921000	+	0	NA	intron (NM_003565, intron 26 of 27)	intron (NM_003565, intron 26 of 27)	-8401	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
24935	chr10	1193671	1193830	+	0	NA	intron (NM_018702, intron 8 of 9)	L1MEg|LINE|L1	33982	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
214622	chr7	150729851	150730730	+	0	NA	intron (NM_001199577, intron 3 of 5)	MLT1E1|LTR|ERVL-MaLR	-7058	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
49706	chr12	31117121	31117680	+	0	NA	intron (NR_153414, intron 40 of 44)	intron (NR_153414, intron 40 of 44)	43540	NM_001257145	1663		NM_004399	ENSG00000013573	DDX11	CHL1|CHLR1|KRG2|WABS	DEAD/H-box helicase 11	protein-coding
29689	chr10	72052901	72053100	+	0	NA	Intergenic	Intergenic	35551	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
80273	chr16	2234351	2234450	+	0	NA	intron (NM_004424, intron 10 of 13)	intron (NM_004424, intron 10 of 13)	-2044	NM_001374	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
59977	chr13	32267821	32268100	+	0	NA	intron (NM_023037, intron 55 of 60)	intron (NM_023037, intron 55 of 60)	47403	NM_001136571	646799		NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1 like	protein-coding
199655	chr6	122435651	122436050	+	0	NA	Intergenic	AluY|SINE|Alu	35957	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
72290	chr15	30988821	30989380	+	0	NA	intron (NM_017762, intron 2 of 15).2	intron (NM_017762, intron 2 of 15).2	2528	NM_017762	54893		NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
188839	chr5	159133201	159133480	+	0	NA	Intergenic	Intergenic	32857	NR_109890	101927740		NR_109890	ENSG00000245812	LINC02202	-	long intergenic non-protein coding RNA 2202	ncRNA
228720	chr9	109114601	109115200	+	0	NA	intron (NM_032012, intron 1 of 17)	intron (NM_032012, intron 1 of 17)	5047	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
5371	chr1	25398671	25399030	+	0	NA	intron (NM_138618, intron 3 of 8)	intron (NM_138618, intron 3 of 8)	22064	NM_138618	6006		NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHCe(152N)|RHE|RHIXB|RHNA|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII|SLC42A4	Rh blood group CcEe antigens	protein-coding
37435	chr11	17390751	17391480	+	0	NA	Intergenic	Intergenic	-1769	NM_001166290	3767		NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|PNDM2|TNDM3	potassium inwardly rectifying channel subfamily J member 11	protein-coding
60724	chr13	44258851	44260200	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-63325	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
7318	chr1	32646921	32647180	+	0	NA	intron (NM_001366257, intron 1 of 6)	AluSx1|SINE|Alu	3500	NM_001366278	339487		NM_178547	ENSG00000176261	ZBTB8OS	ARCH|ARCH2	zinc finger and BTB domain containing 8 opposite strand	protein-coding
158565	chr3	4507171	4507400	+	0	NA	intron (NM_002222, intron 2 of 57)	Charlie1b|DNA|hAT-Charlie	13937	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
237464	chrX	119760151	119760250	+	0	NA	TTS (NM_001105576)	TTS (NM_001105576)	1612	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
45329	chr11	118214001	118214400	+	0	NA	intron (NM_001286570, intron 1 of 8)	intron (NM_001286570, intron 1 of 8)	-1254	NM_153206	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
64835	chr14	35122401	35123550	+	0	NA	promoter-TSS (NM_017917)	promoter-TSS (NM_017917)	423	NM_001256679	9692		NM_014672	ENSG00000100890	PRORP	COXPD54|KIAA0391|MRPP3	protein only RNase P catalytic subunit	protein-coding
41321	chr11	65896671	65897050	+	0	NA	exon (NM_005438, exon 2 of 4)	exon (NM_005438, exon 2 of 4)	3528	NM_005438	8061		NM_005438	ENSG00000175592	FOSL1	FRA|FRA1|fra-1	FOS like 1, AP-1 transcription factor subunit	protein-coding
168046	chr3	136925371	136926330	+	0	NA	intron (NM_001291999, intron 1 of 3)	L1MD1|LINE|L1	-4652	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
113995	chr19	10838721	10839130	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2713	NM_006858	11018		NM_006858	ENSG00000099203	TMED1	IL1RL1LG|Il1rl1l|Tp24|p24g1	transmembrane p24 trafficking protein 1	protein-coding
153915	chr22	30317501	30318330	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	9026	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
142833	chr20	17530701	17531750	+	0	NA	exon (NM_001195, exon 1 of 8)	exon (NM_001195, exon 1 of 8)	154	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
83010	chr16	22205721	22206700	+	0	NA	promoter-TSS (NM_013302).2	promoter-TSS (NM_013302).2	-68	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
188765	chr5	157597971	157598380	+	0	NA	Intergenic	L1ME3A|LINE|L1	-22400	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
170988	chr3	194635901	194636300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2681	NM_138399	93109		NM_138399	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
173693	chr4	15647971	15648530	+	0	NA	intron (NM_012161, intron 1 of 10)	intron (NM_012161, intron 1 of 10)	7107	NM_012161	26234		NM_012161	ENSG00000118564	FBXL5	FBL4|FBL5|FLR1	F-box and leucine rich repeat protein 5	protein-coding
53543	chr12	67355821	67356200	+	0	NA	Intergenic	Intergenic	86549	NR_146500	102724433		NR_146500	ENSG00000256172	LINC02420	-	long intergenic non-protein coding RNA 2420	ncRNA
17088	chr1	156135401	156136080	+	0	NA	intron (NM_170707, intron 5 of 11)	intron (NM_170707, intron 5 of 11)	9570	NM_001257374	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
34	chr1	184301	185430	+	0	NA	TTS (NR_148357)	TTS (NR_148357)	2477	NR_148357	102725121		NR_148357		DDX11L17	-	DEAD/H-box helicase 11 like 17 (pseudogene)	pseudo
19456	chr1	174875151	174875450	+	0	NA	promoter-TSS (NM_001035230)	promoter-TSS (NM_001035230)	-218	NM_001035230	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
140763	chr2	234544921	234545280	+	0	NA	Intergenic	Intergenic	-48019	NM_001282431	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
68205	chr14	76867421	76868080	+	0	NA	intron (NR_169573, intron 12 of 12)	intron (NR_169573, intron 12 of 12)	41342	NR_169572	145497		NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
139501	chr2	224534671	224534830	+	0	NA	intron (NM_003590, intron 3 of 15)	AluY|SINE|Alu	35205	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
110413	chr19	1957701	1958300	+	0	NA	intron (NM_001319, intron 1 of 11)	CpG	-3451	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
150493	chr21	42746101	42747530	+	0	NA	intron (NM_001001567, intron 7 of 18)	intron (NM_001001567, intron 7 of 18)	33179	NR_135517	101928311		NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
85616	chr16	53911171	53911700	+	0	NA	intron (NM_001363894, intron 8 of 9)	intron (NM_001363894, intron 8 of 9)	-127958	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
164428	chr3	59051051	59051800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1393	NM_001351534	200844		NM_198463	ENSG00000163689	CFAP20DC	C3orf67	CFAP20 domain containing	protein-coding
233777	chrX	1429001	1429430	+	0	NA	intron (NM_001173473, intron 6 of 12).2	AluJo|SINE|Alu	23694	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
224041	chr9	3501671	3502280	+	0	NA	intron (NM_134428, intron 1 of 17)	AluY|SINE|Alu	-12541	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
103779	chr17	79003971	79004630	+	0	NA	intron (NM_001159772, intron 1 of 5)	intron (NM_001159772, intron 1 of 5)	5464	NM_001159772	124583		NM_138793	ENSG00000171302	CANT1	DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
21244	chr1	204359471	204359730	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	329	NM_014935	22874		NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
109664	chr19	1016801	1017900	+	0	NA	intron (NM_033420, intron 1 of 9)	intron (NM_033420, intron 1 of 9)	3773	NM_001033026	91304		NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
236719	chrX	78073221	78074180	+	0	NA	Intergenic	LTR12|LTR|ERV1	-30548	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
207872	chr7	50375151	50375450	+	0	NA	intron (NM_001291840, intron 2 of 2)	AluJb|SINE|Alu	56252	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
59624	chr13	27980101	27980300	+	0	NA	intron (NM_001105577, intron 1 of 1)	AluSx|SINE|Alu	8493	NM_001105577	646625		NM_001105577	ENSG00000183463	URAD	PRHOXNB	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase	protein-coding
16478	chr1	154714051	154715030	+	0	NA	intron (NM_170782, intron 6 of 7)	(GT)n|Simple_repeat|Simple_repeat	-86543	NM_001365045	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
106717	chr18	23483271	23483430	+	0	NA	TTS (NM_003831)	TTS (NM_003831)	-20120	NM_001276342	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
106689	chr18	23267151	23267450	+	0	NA	Intergenic	Intergenic	111475	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
158104	chr22	50015051	50016000	+	0	NA	Intergenic	CpG	-2760	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
182130	chr5	56142651	56143150	+	0	NA	intron (NM_024669, intron 7 of 11)	intron (NM_024669, intron 7 of 11)	90430	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
236687	chrX	77735551	77735750	+	0	NA	intron (NM_138270, intron 1 of 33)	intron (NM_138270, intron 1 of 33)	50566	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
173794	chr4	17627721	17627980	+	0	NA	3' UTR (NM_025205, exon 4 of 4)	3' UTR (NM_025205, exon 4 of 4)	13209	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
172545	chr4	2388721	2388980	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	-24036	NM_001172659	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
223927	chr9	518671	518830	+	0	NA	intron (NM_001354332, intron 1 of 11)	intron (NM_001354332, intron 1 of 11)	14055	NM_015158	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
106560	chr18	21685071	21685230	+	0	NA	intron (NM_138340, intron 3 of 8)	intron (NM_138340, intron 3 of 8)	1632	NR_031565	100302135		NR_031565	ENSG00000221493	MIR320C1	MIR320C-1|MIRN320C1|hsa-mir-320c-1|mir-320c-1	microRNA 320c-1	ncRNA
216061	chr8	10332651	10333750	+	0	NA	intron (NM_001199729, intron 6 of 6).2	intron (NM_001199729, intron 6 of 6).2	-141365	NR_120604	101929191		NR_120604	ENSG00000253641	LINC03022	LINCR-0001	long intergenic non-protein coding RNA 3022	ncRNA
39962	chr11	62570221	62570900	+	0	NA	intron (NM_001404, intron 5 of 9)	AluSx3|SINE|Alu	3331	NM_001404	1937		NM_001404	ENSG00000254772	EEF1G	EF1G|GIG35	eukaryotic translation elongation factor 1 gamma	protein-coding
109763	chr19	1122951	1124050	+	0	NA	intron (NM_001100122, intron 4 of 28).2	intron (NM_001100122, intron 4 of 28).2	8721	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
129682	chr2	70439451	70439750	+	0	NA	Intergenic	Intergenic	42040	NR_046798	100874273		NR_046798	ENSG00000224606	TGFA-IT1	-	TGFA intronic transcript 1	ncRNA
69551	chr14	96567301	96567530	+	0	NA	TTS (NM_001363664)	TTS (NM_001363664)	64550	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
184298	chr5	96870471	96871250	+	0	NA	Intergenic	L1MEc|LINE|L1	-5079	NM_001329229	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
73103	chr15	41035721	41036250	+	0	NA	intron (NR_104038, intron 24 of 34)	AluSz|SINE|Alu	80261	NR_104038	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
96427	chr17	40182001	40182580	+	0	NA	intron (NM_001303534, intron 2 of 14)	MIRc|SINE|MIR	4820	NM_016339	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
33038	chr10	110834551	110835430	+	0	NA	intron (NM_001134363, intron 13 of 13)	intron (NM_001134363, intron 13 of 13)	35914	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
231542	chr9	131470501	131470700	+	0	NA	intron (NM_013318, intron 13 of 31)	intron (NM_013318, intron 13 of 31)	-15065	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
46186	chr11	123357921	123358500	+	0	NA	promoter-TSS (NM_001367419)	promoter-TSS (NM_001367419)	-212	NM_001367419	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
174325	chr4	38669171	38669650	+	0	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-4782	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
213145	chr7	131505151	131505450	+	0	NA	intron (NM_005397, intron 7 of 7)	MIRb|SINE|MIR	51328	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
140664	chr2	233990301	233991200	+	0	NA	intron (NM_024080, intron 21 of 25)	LTR43B|LTR|ERV1	-59952	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
34374	chr10	132279901	132280250	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	27147	NM_001318879	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
215806	chr8	2317121	2317450	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	240696	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
60212	chr13	40487921	40488180	+	0	NA	Intergenic	Intergenic	-7044	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
124480	chr19	58556121	58556380	+	0	NA	intron (NM_003969, intron 5 of 5)	intron (NM_003969, intron 5 of 5)	-1145	NM_198426	27243		NM_014453	ENSG00000130724	CHMP2A	BC-2|BC2|CHMP2|VPS2|VPS2A	charged multivesicular body protein 2A	protein-coding
47015	chr12	348521	348980	+	0	NA	intron (NM_001042603, intron 10 of 27)	L1PA6|LINE|L1	40570	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
65880	chr14	55107851	55108530	+	0	NA	Intergenic	Intergenic	-21062	NM_001357678	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
51527	chr12	52287951	52288330	+	0	NA	exon (NM_002281, exon 5 of 9)	exon (NM_002281, exon 5 of 9)	3394	NM_002281	3887		NM_002281	ENSG00000205426	KRT81	HB1|Hb-1|K81|KRTHB1|MLN137|ghHkb1|hHAKB2-1	keratin 81	protein-coding
20258	chr1	193569621	193570180	+	0	NA	Intergenic	Intergenic	265155	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
10170	chr1	61081501	61083000	+	0	NA	promoter-TSS (NM_005595)	promoter-TSS (NM_005595)	-311	NM_005595	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
52250	chr12	54414971	54415950	+	0	NA	intron (NM_002205, intron 1 of 29)	MIR3|SINE|MIR	3806	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
169064	chr3	153289471	153289630	+	0	NA	Intergenic	Intergenic	127324	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
2231	chr1	8860401	8860730	+	0	NA	TTS (NM_001201483)	TTS (NM_001201483)	6025	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
235424	chrX	45774751	45775050	+	0	NA	Intergenic	Intergenic	-27776	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
108646	chr18	76525301	76525650	+	0	NA	Intergenic	Intergenic	-3180	NR_015417	284276		NR_015417	ENSG00000266256	LINC00908	ASRPS	long intergenic non-protein coding RNA 908	ncRNA
29381	chr10	70063521	70063930	+	0	NA	intron (NM_018649, intron 1 of 8)	HAL1ME|LINE|L1	10879	NM_018649	55506		NM_018649	ENSG00000099284	MACROH2A2	H2AFY2	macroH2A.2 histone	protein-coding
193070	chr6	28715451	28715550	+	0	NA	Intergenic	Intergenic	-61025	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
57053	chr12	120884001	120884200	+	0	NA	intron (NM_139015, intron 1 of 10)	AluSp|SINE|Alu	20258	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
208140	chr7	64183151	64183450	+	0	NA	Intergenic	CpG	-23903	NM_001159524	730291		NM_001159524	ENSG00000223614	ZNF735	ZNF735P	zinc finger protein 735	protein-coding
45570	chr11	118836951	118837250	+	0	NA	Intergenic	AluJb|SINE|Alu	-45936	NM_004397	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
66942	chr14	65567071	65567430	+	0	NA	intron (NM_001371536, intron 3 of 11)	intron (NM_001371536, intron 3 of 11)	96148	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
230544	chr9	128398371	128398730	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluY|SINE|Alu	-5836	NR_029837	407003		NR_029837	ENSG00000284185	MIR219A2	MIR219-2|MIRN219-2|hsa-mir-219a-2|mir-219a-2	microRNA 219a-2	ncRNA
141662	chr2	241770021	241771000	+	0	NA	Intergenic	Intergenic	-6312	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
102824	chr17	76460471	76461180	+	0	NA	intron (NM_001166579, intron 2 of 6)	intron (NM_001166579, intron 2 of 6)	-6778	NM_001088	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
18139	chr1	160747701	160748600	+	0	NA	intron (NM_001282590, intron 1 of 5)	intron (NM_001282590, intron 1 of 5)	8903	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
214457	chr7	150324601	150324800	+	0	NA	intron (NM_023942, intron 1 of 1)	intron (NM_023942, intron 1 of 1)	-1031	NM_001164458	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
24610	chr1	246508971	246509330	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-1871	NM_001167740	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
12557	chr1	108691271	108694080	+	0	NA	exon (NM_018061, exon 1 of 6)	exon (NM_018061, exon 1 of 6)	365	NM_001349759	55119		NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
23860	chr1	234777951	234779200	+	0	NA	Intergenic	Intergenic	-18519	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
39073	chr11	47986001	47986200	+	0	NA	intron (NM_002843, intron 1 of 24)	FLAM_C|SINE|Alu	5541	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
223174	chr8	143551651	143551950	+	0	NA	Intergenic	Intergenic	-1587	NM_001166237	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
188476	chr5	154761051	154762180	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	4461	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
200370	chr6	134176651	134177100	+	0	NA	intron (NM_001143676, intron 3 of 13)	intron (NM_001143676, intron 3 of 13)	986	NM_001143677	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
11220	chr1	88873221	88873980	+	0	NA	intron (NM_001514, intron 2 of 6)	MLT1J|LTR|ERVL-MaLR	17967	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
58884	chr13	18609101	18609900	+	0	NA	Intergenic	CpG	130599	NR_047508	100874164		NR_047508		LINC00417	-	long intergenic non-protein coding RNA 417	ncRNA
132525	chr2	106142721	106142980	+	0	NA	intron (NR_165308, intron 6 of 14)	intron (NR_165308, intron 6 of 14)	-3969	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
154262	chr22	31624571	31625080	+	0	NA	intron (NM_001326413, intron 2 of 7)	intron (NM_001326413, intron 2 of 7)	-3294	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
200845	chr6	138372871	138373100	+	0	NA	Intergenic	Intergenic	-4920	NM_001368163	110806279		NM_001368163	ENSG00000262543	SMIM28	-	small integral membrane protein 28	protein-coding
184032	chr5	91367301	91367630	+	0	NA	Intergenic	AluJr|SINE|Alu	12632	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
108990	chr18	79692571	79693130	+	0	NA	intron (NM_001202504, intron 1 of 12)	intron (NM_001202504, intron 1 of 12)	11420	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
23895	chr1	234965021	234965450	+	0	NA	Intergenic	Intergenic	-1236	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
23401	chr1	228216871	228217450	+	0	NA	exon (NM_001098623, exon 8 of 105)	exon (NM_001098623, exon 8 of 105)	-3496	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
166089	chr3	109532451	109532930	+	0	NA	Intergenic	L1M1|LINE|L1	-70138	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
5722	chr1	26408171	26409130	+	0	NA	Intergenic	Intergenic	-2167	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
238858	chrX	154487851	154489130	+	0	NA	exon (NM_001142391, exon 4 of 4)	exon (NM_001142391, exon 4 of 4)	-1875	NM_014235	8266		NM_014235	ENSG00000102178	UBL4A	DX254E|DXS254E|G6PD|GDX|GET5|MDY2|TMA24|UBL4	ubiquitin like 4A	protein-coding
39286	chr11	58543701	58543900	+	0	NA	intron (NM_004811, intron 7 of 8)	intron (NM_004811, intron 7 of 8)	32056	NM_004811	9404		NM_004811	ENSG00000110031	LPXN	LDPL	leupaxin	protein-coding
134345	chr2	136122501	136122930	+	0	NA	Intergenic	Intergenic	-4566	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
226183	chr9	64774471	64774630	+	0	NA	Intergenic	CpG	-29184	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
175204	chr4	56651621	56652480	+	0	NA	intron (NM_001145460, intron 3 of 4)	intron (NM_001145460, intron 3 of 4)	4472	NM_139211	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
68929	chr14	91378101	91378700	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	39420	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
148578	chr21	5044851	5044950	+	0	NA	Intergenic	Intergenic	22346	NM_001283050	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
134870	chr2	148725901	148726430	+	0	NA	intron (NM_015630, intron 2 of 13)	L1MB2|LINE|L1	81414	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
231746	chr9	132141551	132141980	+	0	NA	Intergenic	Intergenic	-20293	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
73735	chr15	45197951	45199600	+	0	NA	exon (NM_138356, exon 2 of 8)	exon (NM_138356, exon 2 of 8)	2341	NM_138356	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
176714	chr4	101252701	101252900	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	-11928	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
63995	chr14	22486651	22486950	+	0	NA	Intergenic	Intergenic	-3841	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
179667	chr4	189980671	189980930	+	0	NA	Intergenic	Intergenic	39928	NM_004477	2483		NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
96846	chr17	41979951	41980600	+	0	NA	intron (NM_003315, intron 12 of 13)	AluSc|SINE|Alu	12478	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
43418	chr11	77449151	77449450	+	0	NA	intron (NM_001376284, intron 1 of 15)	intron (NM_001376284, intron 1 of 15)	24794	NM_001376277	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
219420	chr8	71804751	71805050	+	0	NA	Intergenic	Intergenic	-38223	NR_033652	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
28829	chr10	62373671	62374750	+	0	NA	promoter-TSS (NM_014951)	promoter-TSS (NM_014951)	53	NM_199450	22891		NM_014951	ENSG00000138311	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
84262	chr16	30032201	30032680	+	0	NA	intron (NM_001352173, intron 2 of 5)	intron (NM_001352173, intron 2 of 5)	-1169	NM_031478	83723		NM_031478	ENSG00000149926	TLCD3B	CORD22|FAM57B|FP1188	TLC domain containing 3B	protein-coding
130529	chr2	85635571	85635930	+	0	NA	intron (NR_046347, intron 6 of 12)	intron (NR_046347, intron 6 of 12)	19564	NM_001256725	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
163374	chr3	50482671	50482830	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	20884	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
200527	chr6	136244151	136244400	+	0	NA	intron (NM_138419, intron 3 of 7)	Tigger3b|DNA|TcMar-Tigger	6036	NM_001318738	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
132847	chr2	110846501	110847630	+	0	NA	intron (NM_001371254, intron 10 of 18)	intron (NM_001371254, intron 10 of 18)	114492	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
30191	chr10	74573501	74573730	+	0	NA	intron (NM_001369123, intron 7 of 9)	L1P1|LINE|L1	-44291	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
202849	chr6	159765301	159765780	+	0	NA	intron (NM_001303253, intron 2 of 8)	AluSz|SINE|Alu	3061	NM_001303253	39		NM_005891	ENSG00000120437	ACAT2	-	acetyl-CoA acetyltransferase 2	protein-coding
196239	chr6	42881021	42882330	+	0	NA	intron (NR_134562, intron 2 of 6)	AluSz6|SINE|Alu	2059	NM_001366481	285855		NM_198486	ENSG00000146223	RPL7L1	dJ475N16.4	ribosomal protein L7 like 1	protein-coding
63960	chr14	22122301	22122700	+	0	NA	Intergenic	Intergenic	310253	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
44294	chr11	102320321	102321330	+	0	NA	intron (NM_182962, intron 1 of 9)	Charlie8|DNA|hAT-Charlie	3341	NM_001165	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
62274	chr13	98579851	98579950	+	0	NA	Intergenic	Intergenic	2645	NR_046542	100874069		NR_046542		STK24-AS1	-	STK24 antisense RNA 1	ncRNA
199360	chr6	116100321	116101900	+	0	NA	intron (NM_152729, intron 1 of 11)	CpG	257	NM_152729	221294		NM_152729	ENSG00000178425	NT5DC1	C6orf200|LP2642|NT5C2L1	5'-nucleotidase domain containing 1	protein-coding
115178	chr19	14431571	14432300	+	0	NA	Intergenic	Intergenic	-1371	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
223402	chr8	143925801	143926000	+	0	NA	intron (NM_201383, intron 30 of 31)	CpG-27761	13697	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
83147	chr16	23336051	23336150	+	0	NA	intron (NM_000336, intron 1 of 12)	MIR1_Amn|SINE|MIR	33798	NM_000336	6338		NM_000336	ENSG00000168447	SCNN1B	BESC1|ENaCb|ENaCbeta|LIDLS1|PHA1B2|SCNEB|beta-ENaC|beta-NaCH	sodium channel epithelial 1 subunit beta	protein-coding
174416	chr4	39449951	39450350	+	0	NA	3' UTR (NM_175737, exon 5 of 5)	3' UTR (NM_175737, exon 5 of 5)	8772	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
30898	chr10	87038501	87038900	+	0	NA	Intergenic	L1PA13|LINE|L1	18406	NM_001146157	643161		NM_001146157	ENSG00000188100	FAM25A	bA96C23.5	family with sequence similarity 25 member A	protein-coding
82723	chr16	21023521	21023800	+	0	NA	intron (NM_017539, intron 39 of 61)	L2a|LINE|L2	122398	NR_161432	57149		NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
205447	chr7	17063001	17063300	+	0	NA	Intergenic	L2a|LINE|L2	-181167	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
135449	chr2	161234101	161234500	+	0	NA	intron (NM_004180, intron 7 of 7)	intron (NM_004180, intron 7 of 7)	-10439	NR_110164	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
192921	chr6	27686301	27686600	+	0	NA	Intergenic	AluSz6|SINE|Alu	-7585	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
177469	chr4	113739271	113739780	+	0	NA	intron (NM_001321585, intron 2 of 19)	intron (NM_001321585, intron 2 of 19)	22213	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
166383	chr3	113485101	113485700	+	0	NA	intron (NM_144718, intron 7 of 17)	L1P3|LINE|L1	29444	NM_001331079	152185		NM_144718	ENSG00000163611	SPICE1	CCDC52|SPICE	spindle and centriole associated protein 1	protein-coding
48550	chr12	10225501	10225730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	12738	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
1633	chr1	3771721	3773400	+	0	NA	promoter-TSS (NM_001163724)	promoter-TSS (NM_001163724)	-189	NM_001379691	388588		NM_001163724	ENSG00000235169	SMIM1	Vel	small integral membrane protein 1 (Vel blood group)	protein-coding
41629	chr11	66471401	66471600	+	0	NA	intron (NM_145065, intron 4 of 7)	intron (NM_145065, intron 4 of 7)	4595	NM_145065	246330		NM_145065	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
45621	chr11	118916201	118916780	+	0	NA	intron (NM_001378213, intron 2 of 9)	intron (NM_001378213, intron 2 of 9)	5782	NR_039713	100616376		NR_039713	ENSG00000264211	MIR4492	mir-4492	microRNA 4492	ncRNA
156995	chr22	42507321	42507750	+	0	NA	TTS (NM_015703)	TTS (NM_015703)	6956	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
116915	chr19	18790801	18791150	+	0	NA	intron (NM_000095, intron 1 of 18)	CpG-14094	330	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
26842	chr10	24725901	24726500	+	0	NA	Intergenic	AluJo|SINE|Alu	-2313	NM_001367447	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
8981	chr1	44642651	44642950	+	0	NA	intron (NM_001319957, intron 7 of 13)	intron (NM_001319957, intron 7 of 13)	10832	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
183307	chr5	76623171	76623330	+	0	NA	5' UTR (NM_004101, exon 1 of 2)	5' UTR (NM_004101, exon 1 of 2)	153	NM_001256566	2151		NM_004101	ENSG00000164220	F2RL2	PAR-3|PAR3	coagulation factor II thrombin receptor like 2	protein-coding
84591	chr16	30654221	30655280	+	0	NA	exon (NM_001320464, exon 8 of 12)	exon (NM_001320464, exon 8 of 12)	-3681	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
155040	chr22	37486001	37487580	+	0	NA	promoter-TSS (NM_002405)	promoter-TSS (NM_002405)	-403	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
33255	chr10	114498471	114498850	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	28253	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
82188	chr16	14939521	14939780	+	0	NA	intron (NR_146231, intron 31 of 38)	intron (NR_146231, intron 31 of 38)	2207	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
176613	chr4	99087851	99089950	+	0	NA	promoter-TSS (NM_000671)	promoter-TSS (NM_000671)	43	NR_037884	100507053		NR_037884	ENSG00000246090	LOC100507053	-	uncharacterized LOC100507053	ncRNA
88045	chr16	81446331	81446980	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	1485	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
145041	chr20	38221121	38221600	+	0	NA	intron (NR_145960, intron 7 of 10)	intron (NR_145960, intron 7 of 10)	-38815	NR_104170	149684		NR_104170	ENSG00000285347	LOC149684	-	uncharacterized LOC149684	ncRNA
25980	chr10	11819751	11820080	+	0	NA	Intergenic	Intergenic	-3441	NM_153256	254427		NM_153256	ENSG00000148426	PROSER2	C10orf47	proline and serine rich 2	protein-coding
195611	chr6	37694801	37695000	+	0	NA	intron (NM_153487, intron 1 of 16)	intron (NM_153487, intron 1 of 16)	2983	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
32449	chr10	102632321	102632780	+	0	NA	3' UTR (NM_016169, exon 12 of 12)	3' UTR (NM_016169, exon 12 of 12)	-11929	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
81316	chr16	4702101	4702630	+	0	NA	intron (NM_133450, intron 8 of 17)	intron (NM_133450, intron 8 of 17)	8647	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
82881	chr16	21553701	21553980	+	0	NA	Intergenic	Intergenic	-33396	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
112026	chr19	5075501	5076280	+	0	NA	intron (NM_001370093, intron 7 of 11)	MIRb|SINE|MIR	106777	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
137892	chr2	200854351	200854680	+	0	NA	intron (NR_027856, intron 9 of 10)	AluY|SINE|Alu	10046	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
233799	chrX	1450301	1450930	+	0	NA	intron (NM_001173473, intron 1 of 12).2	intron (NM_001173473, intron 1 of 12).2	2294	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
103797	chr17	79073401	79073830	+	0	NA	Intergenic	Intergenic	-1209	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
49502	chr12	25325471	25325800	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	-74706	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
33775	chr10	122953951	122955150	+	0	NA	promoter-TSS (NM_024942)	promoter-TSS (NM_024942)	-323	NM_024942	80007		NM_024942	ENSG00000119965	C10orf88	PAAT	chromosome 10 open reading frame 88	protein-coding
183801	chr5	82312451	82312550	+	0	NA	intron (NM_001349373, intron 10 of 11)	intron (NM_001349373, intron 10 of 11)	33038	NM_001017971	92270		NM_001017971		ATP6AP1L	-	ATPase H+ transporting accessory protein 1 like (pseudogene)	pseudo
40268	chr11	63812321	63812580	+	0	NA	Intergenic	AluSc|SINE|Alu	-1006	NM_138471	144097		NM_138471	ENSG00000168005	SPINDOC	C11orf84|SPIN-DOC	spindlin interactor and repressor of chromatin binding	protein-coding
23529	chr1	229136901	229137100	+	0	NA	Intergenic	Intergenic	37801	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
129033	chr2	64987851	64988600	+	0	NA	promoter-TSS (NM_001348407)	promoter-TSS (NM_001348407)	-254	NM_001193493	6509		NM_003038	ENSG00000115902	SLC1A4	ASCT1|SATT|SPATCCM	solute carrier family 1 member 4	protein-coding
231779	chr9	132260351	132260850	+	0	NA	TTS (NM_015046)	TTS (NM_015046)	94256	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
101777	chr17	73165901	73166280	+	0	NA	intron (NM_001050, intron 1 of 1)	CpG	1080	NM_001050	6752		NM_001050	ENSG00000180616	SSTR2	SST2	somatostatin receptor 2	protein-coding
4463	chr1	21346851	21347150	+	0	NA	Intergenic	Intergenic	-1496	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
119353	chr19	39984351	39984650	+	0	NA	Intergenic	AluSg|SINE|Alu	-12560	NM_178544	339327		NM_178544	ENSG00000187187	ZNF546	ZNF49	zinc finger protein 546	protein-coding
34864	chr11	350451	350550	+	0	NA	Intergenic	LTR2|LTR|ERV1	-18999	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
27507	chr10	32290171	32290330	+	0	NA	intron (NR_168511, intron 6 of 13)	AluSx|SINE|Alu	56908	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
33614	chr10	119592251	119592630	+	0	NA	intron (NM_001033925, intron 1 of 11)	intron (NM_001033925, intron 1 of 11)	4589	NM_001323965	7073		NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
39801	chr11	61966611	61968930	+	0	NA	promoter-TSS (NM_002032)	promoter-TSS (NM_002032)	-136	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
65133	chr14	44971971	44972130	+	0	NA	intron (NR_131765, intron 1 of 19)	MSTA|LTR|ERVL-MaLR	9860	NM_001308120	23116		NM_015091	ENSG00000198718	TOGARAM1	FAM179B|JBTS37|KIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding
39495	chr11	61021251	61022640	+	0	NA	Intergenic	Intergenic	50265	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
175810	chr4	77827251	77828080	+	0	NA	Intergenic	L2c|LINE|L2	-7396	NM_001365006	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
179305	chr4	177391401	177391600	+	0	NA	Intergenic	Intergenic	50937	NM_000027	175		NM_000027	ENSG00000038002	AGA	AGU|ASRG|GA	aspartylglucosaminidase	protein-coding
8207	chr1	39653321	39653900	+	0	NA	Intergenic	Intergenic	-13967	NM_014571	26508		NM_014571	ENSG00000163909	HEYL	HESR3|HEY3|HRT3|bHLHb33	hes related family bHLH transcription factor with YRPW motif like	protein-coding
76959	chr15	78128771	78129440	+	0	NA	intron (NM_001301224, intron 1 of 4)	intron (NM_001301224, intron 1 of 4)	2340	NM_006383	10518		NM_006383	ENSG00000136425	CIB2	DFNB48|KIP2|USH1J	calcium and integrin binding family member 2	protein-coding
178694	chr4	152539301	152539700	+	0	NA	TTS (NR_033797)	TTS (NR_033797)	3072	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
212074	chr7	115016901	115017100	+	0	NA	3' UTR (NM_001166345, exon 5 of 5)	3' UTR (NM_001166345, exon 5 of 5)	-61958	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
79033	chr16	70471	70650	+	0	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	2071	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
115062	chr19	14175151	14175450	+	0	NA	intron (NM_001008701, intron 3 of 23)	intron (NM_001008701, intron 3 of 23)	30869	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
39108	chr11	48054301	48054750	+	0	NA	intron (NM_002843, intron 1 of 24)	MIRc|SINE|MIR	-42257	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
69237	chr14	92838301	92838500	+	0	NA	intron (NM_005113, intron 12 of 12)	AluSz|SINE|Alu	44095	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
188449	chr5	154476351	154476830	+	0	NA	intron (NM_004821, intron 1 of 1)	intron (NM_004821, intron 1 of 1)	1637	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
121022	chr19	45797871	45798230	+	0	NA	intron (NM_030785, intron 5 of 5)	(AGAGAC)n|Simple_repeat|Simple_repeat	-5205	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
39460	chr11	60976671	60976830	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	5070	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
155454	chr22	38474071	38474430	+	0	NA	intron (NM_006855, intron 1 of 4)	intron (NM_006855, intron 1 of 4)	6154	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
105250	chr17	82424221	82425150	+	0	NA	intron (NM_173620, intron 3 of 11)	intron (NM_173620, intron 3 of 11)	-6099	NM_024648	79701		NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron dependent oxygenase domain containing 3	protein-coding
199736	chr6	125776021	125776800	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-4705	NM_001199619	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
15892	chr1	151539851	151541630	+	0	NA	intron (NM_001126337, intron 1 of 11)	intron (NM_001126337, intron 1 of 11)	431	NM_001301317	7286		NM_020127	ENSG00000143367	TUFT1	WHSF	tuftelin 1	protein-coding
83349	chr16	25048571	25050530	+	0	NA	Intergenic	Intergenic	-17337	NR_135196	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
54693	chr12	93420371	93420530	+	0	NA	intron (NM_003348, intron 1 of 3)	intron (NM_003348, intron 1 of 3)	21497	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
158828	chr3	9769401	9770400	+	0	NA	promoter-TSS (NM_003656)	promoter-TSS (NM_003656)	47	NM_003656	8536		NM_003656	ENSG00000134072	CAMK1	CAMKI	calcium/calmodulin dependent protein kinase I	protein-coding
18906	chr1	168361301	168361830	+	0	NA	Intergenic	L3|LINE|CR1	-13959	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
15923	chr1	151756321	151756580	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-6519	NM_001134939	51686		NM_016178	ENSG00000143450	OAZ3	AZ3|OAZ-t|TISP15	ornithine decarboxylase antizyme 3	protein-coding
167890	chr3	136141251	136141730	+	0	NA	intron (NM_002718, intron 13 of 13)	L2b|LINE|L2	52978	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
43850	chr11	88016371	88016700	+	0	NA	Intergenic	Intergenic	158908	NM_022337	23682		NM_022337	ENSG00000123892	RAB38	NY-MEL-1|rrGTPbp	RAB38, member RAS oncogene family	protein-coding
42330	chr11	68487501	68487900	+	0	NA	intron (NM_001352362, intron 2 of 24)	L1MC1|LINE|L1	26948	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
112277	chr19	5809601	5810400	+	0	NA	intron (NM_004558, intron 1 of 2)	AluY|SINE|Alu	4933	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
103542	chr17	78657971	78658530	+	0	NA	Intergenic	Intergenic	-26193	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
132341	chr2	105584521	105584980	+	0	NA	Intergenic	HAL1|LINE|L1	25809	NR_038891	285000		NR_038891		LINC02946	RMEL1	long intergenic non-protein coding RNA 2946	ncRNA
108679	chr18	76948421	76948780	+	0	NA	intron (NM_001306089, intron 27 of 30)	MER77|LTR|ERVL	68455	NM_001025090	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
238677	chrX	154040301	154040700	+	0	NA	intron (NM_001369393, intron 1 of 3)	L1MC4|LINE|L1	-20511	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
60148	chr13	39937021	39937430	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-244584	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
125507	chr2	12715751	12717300	+	0	NA	promoter-TSS (NR_027303)	promoter-TSS (NR_027303)	-347	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
161394	chr3	41210451	41211680	+	0	NA	intron (NM_001098210, intron 1 of 15)	AluJr4|SINE|Alu	11560	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
215969	chr8	8750671	8751050	+	0	NA	Intergenic	Intergenic	48923	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
92384	chr17	8248801	8250400	+	0	NA	intron (NM_012393, intron 1 of 27)	L2a|LINE|L2	311	NM_012393	5198		NM_012393	ENSG00000178921	PFAS	FGAMS|FGAR-AT|FGARAT|GATD8|PURL	phosphoribosylformylglycinamidine synthase	protein-coding
114573	chr19	12913951	12914730	+	0	NA	intron (NM_001105578, intron 2 of 5)	MER63A|DNA|hAT-Blackjack	4953	NM_001105578	256126		NM_001105578	ENSG00000161860	SYCE2	CESC1	synaptonemal complex central element protein 2	protein-coding
221929	chr8	129857051	129857350	+	0	NA	intron (NM_001353294, intron 6 of 12)	L2b|LINE|L2	-70576	NM_031415	56169		NM_031415	ENSG00000147697	GSDMC	MLZE	gasdermin C	protein-coding
169408	chr3	160837471	160837830	+	0	NA	intron (NM_139245, intron 1 of 3)	intron (NM_139245, intron 1 of 3)	-4499	NM_001317911	151742		NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
55407	chr12	104475121	104475380	+	0	NA	intron (NM_018413, intron 1 of 2)	L2c|LINE|L2	18302	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
178793	chr4	153490701	153491300	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	24640	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
183665	chr5	80407151	80408700	+	0	NA	promoter-TSS (NM_001284237)	promoter-TSS (NM_001284237)	-139	NR_146174	9765		NM_014733	ENSG00000039319	ZFYVE16	PPP1R69	zinc finger FYVE-type containing 16	protein-coding
60841	chr13	45428901	45429250	+	0	NA	Intergenic	AluSx|SINE|Alu	-10620	NM_001286806	253512		NM_001010875	ENSG00000174032	SLC25A30	KMCP1	solute carrier family 25 member 30	protein-coding
206933	chr7	38232171	38233730	+	0	NA	Intergenic	Intergenic	40697	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
153103	chr22	23533171	23533730	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-4652	NR_109832	101978785		NR_109832		PCAT14	-	prostate cancer associated transcript 14	ncRNA
62754	chr13	107205301	107205580	+	0	NA	intron (NM_001080396, intron 2 of 2)	intron (NM_001080396, intron 2 of 2)	115523	NR_145739	109616978		NR_145739	ENSG00000201847	SNORD31B	-	small nucleolar RNA, C/D box 31B	snoRNA
2120	chr1	8182271	8183250	+	0	NA	Intergenic	Intergenic	-25912	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
134521	chr2	143525601	143525980	+	0	NA	intron (NM_018460, intron 10 of 13)	intron (NM_018460, intron 10 of 13)	396371	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
148986	chr21	14076471	14076730	+	0	NA	Intergenic	Intergenic	-96156	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
236980	chrX	101405701	101406430	+	0	NA	intron (NR_164783, intron 1 of 7)	AluY|SINE|Alu	1860	NM_000169	2717		NM_000169	ENSG00000102393	GLA	GALA	galactosidase alpha	protein-coding
203088	chr6	166343921	166344450	+	0	NA	intron (NR_040022, intron 1 of 1)	MER41A|LTR|ERV1	1554	NR_040022	100289495		NR_040022	ENSG00000286760	LOC100289495	-	uncharacterized LOC100289495	ncRNA
137725	chr2	197710251	197710550	+	0	NA	Intergenic	Intergenic	5031	NM_138395	92935		NM_138395	ENSG00000247626	MARS2	COXPD25|MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
82206	chr16	14987551	14987850	+	0	NA	intron (NM_001285448, intron 2 of 21)	AluSx1|SINE|Alu	12674	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
20941	chr1	202215601	202215800	+	0	NA	intron (NM_001017404, intron 1 of 15)	intron (NM_001017404, intron 1 of 15)	1545	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
123126	chr19	51904271	51905430	+	0	NA	intron (NM_023074, intron 1 of 4)	intron (NM_023074, intron 1 of 4)	167	NM_023074	65251		NM_023074	ENSG00000198093	ZNF649	-	zinc finger protein 649	protein-coding
194925	chr6	34912471	34913130	+	0	NA	intron (NM_015245, intron 1 of 23)	intron (NM_015245, intron 1 of 23)	23545	NM_015245	23294		NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
223620	chr8	144320701	144321750	+	0	NA	intron (NM_012079, intron 2 of 16)	intron (NM_012079, intron 2 of 16)	-3910	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
91072	chr17	3036971	3037330	+	0	NA	3' UTR (NM_015085, exon 25 of 25)	3' UTR (NM_015085, exon 25 of 25)	26457	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
219952	chr8	89302371	89302530	+	0	NA	Intergenic	L1MD3|LINE|L1	455261	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
32813	chr10	109921301	109921500	+	0	NA	intron (NM_020383, intron 1 of 20)	intron (NM_020383, intron 1 of 20)	1846	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
36788	chr11	9464221	9464480	+	0	NA	intron (NM_001282656, intron 1 of 15)	AluSx|SINE|Alu	3338	NM_003442	7702		NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
13761	chr1	117009001	117009730	+	0	NA	intron (NM_001256106, intron 1 of 9)	intron (NM_001256106, intron 1 of 9)	7615	NM_004258	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
125886	chr2	24652801	24653000	+	0	NA	intron (NM_147233, intron 2 of 20)	intron (NM_147233, intron 2 of 20)	68423	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
141916	chr20	1117001	1117380	+	0	NA	TTS (NR_136535)	TTS (NR_136535)	1258	NR_136535	105372493		NR_136535		LOC105372493	-	uncharacterized LOC105372493	ncRNA
168097	chr3	138348101	138349150	+	0	NA	promoter-TSS (NM_001252092)	promoter-TSS (NM_001252092)	-41	NM_001252093	22808		NM_012219	ENSG00000158186	MRAS	M-RAs|NS11|R-RAS3|RRAS3	muscle RAS oncogene homolog	protein-coding
199113	chr6	111685221	111685680	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	73681	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
221194	chr8	120739901	120740100	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-21253	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
114240	chr19	11501901	11502300	+	0	NA	intron (NM_138783, intron 1 of 8)	AluSz|SINE|Alu	3739	NM_138783	115950		NM_138783	ENSG00000161914	ZNF653	E430039K05Rik|ZIP67	zinc finger protein 653	protein-coding
219602	chr8	80031871	80032630	+	0	NA	Intergenic	Intergenic	-1991	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
156482	chr22	41274051	41274350	+	0	NA	intron (NM_001278651, intron 4 of 16)	LTR16B1|LTR|ERVL	11987	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
97219	chr17	42783301	42783550	+	0	NA	intron (NM_032387, intron 2 of 18)	intron (NM_032387, intron 2 of 18)	2815	NM_032387	65266		NM_032387	ENSG00000126562	WNK4	PHA2B|PRKWNK4	WNK lysine deficient protein kinase 4	protein-coding
52770	chr12	56679571	56679730	+	0	NA	intron (NM_001282601, intron 1 of 6)	intron (NM_001282601, intron 1 of 6)	8634	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
135476	chr2	161416101	161416450	+	0	NA	promoter-TSS (NM_006593)	promoter-TSS (NM_006593)	-22	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
36123	chr11	3100751	3101250	+	0	NA	intron (NM_145638, intron 12 of 20)	AluSz|SINE|Alu	-43577	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
28560	chr10	50625201	50625980	+	0	NA	intron (NR_126411, intron 1 of 3)	MER5A|DNA|hAT-Charlie	639	NR_126411	104355295		NR_126411		SGMS1-AS1	-	SGMS1 antisense RNA 1	ncRNA
142443	chr20	3942551	3942650	+	0	NA	intron (NM_001321749, intron 4 of 5)	AluY|SINE|Alu	-25037	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
18337	chr1	161198421	161199250	+	0	NA	promoter-TSS (NM_004550)	promoter-TSS (NM_004550)	219	NM_001320336	9507		NM_005099	ENSG00000158859	ADAMTS4	ADAMTS-2|ADAMTS-4|ADMP-1	ADAM metallopeptidase with thrombospondin type 1 motif 4	protein-coding
121944	chr19	48464721	48465130	+	0	NA	3' UTR (NM_013348, exon 3 of 3)	3' UTR (NM_013348, exon 3 of 3)	-4283	NM_017457	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
119059	chr19	39124371	39124530	+	0	NA	Intergenic	L2a|LINE|L2	-1336	NM_001014831	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
129339	chr2	68749171	68749800	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	14108	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
21076	chr1	203309751	203310700	+	0	NA	TTS (NM_006763)	TTS (NM_006763)	4706	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
24041	chr1	235286821	235287300	+	0	NA	intron (NM_016374, intron 2 of 23)	AluSx1|SINE|Alu	-40156	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
20778	chr1	201018921	201020600	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	3954	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
164872	chr3	71076601	71076830	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-11791	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
3972	chr1	18820601	18821000	+	0	NA	Intergenic	Intergenic	38860	NM_152232	80834		NM_152232	ENSG00000179002	TAS1R2	GPR71|T1R2|TR2	taste 1 receptor member 2	protein-coding
207428	chr7	44494371	44494730	+	0	NA	Intergenic	AluY|SINE|Alu	-3892	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
53584	chr12	67703801	67704000	+	0	NA	Intergenic	Intergenic	25575	NR_110063	101927901		NR_110063	ENSG00000255970	LINC02421	-	long intergenic non-protein coding RNA 2421	ncRNA
57786	chr12	123066501	123066700	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-14784	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
77116	chr15	78941071	78941430	+	0	NA	intron (NM_001319137, intron 1 of 12)	AluSx4|SINE|Alu	3796	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
191090	chr6	3749171	3749650	+	0	NA	intron (NM_183373, intron 1 of 4)	CR1-3_Croc|LINE|CR1	2303	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
139628	chr2	225464521	225465000	+	0	NA	intron (NM_001371273, intron 3 of 7)	intron (NM_001371273, intron 3 of 7)	63874	NM_020864	57624		NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding
67464	chr14	70873451	70873830	+	0	NA	Intergenic	LTR1A1|LTR|ERV1	-33819	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
202876	chr6	159968521	159970150	+	0	NA	exon (NM_000876, exon 1 of 48)	exon (NM_000876, exon 1 of 48)	253	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
28595	chr10	55224171	55224530	+	0	NA	intron (NM_001354404, intron 2 of 34)	MLT1H|LTR|ERVL-MaLR	-374692	NM_001190478	100463289		NM_001190478		MTRNR2L5	HN5	MT-RNR2 like 5 (pseudogene)	pseudo
126260	chr2	27118521	27119600	+	0	NA	promoter-TSS (NM_006569)	promoter-TSS (NM_006569)	67	NM_001301324	10669		NM_006569	ENSG00000138028	CGREF1	CGR11	cell growth regulator with EF-hand domain 1	protein-coding
127975	chr2	46752001	46752200	+	0	NA	intron (NM_144949, intron 1 of 1)	MER58B|DNA|hAT-Charlie	52805	NM_144949	9655		NM_014011	ENSG00000171150	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
196167	chr6	42562821	42563080	+	0	NA	Intergenic	Intergenic	-1072	NM_015255	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
111641	chr19	4181121	4181380	+	0	NA	intron (NM_001321059, intron 1 of 6)	L2a|LINE|L2	1056	NM_001321064	51548		NM_016539	ENSG00000077463	SIRT6	SIR2L6|hSIRT6	sirtuin 6	protein-coding
190388	chr5	179791571	179791730	+	0	NA	Intergenic	AluJo|SINE|Alu	-2336	NM_145867	4056		NM_000897	ENSG00000213316	LTC4S	-	leukotriene C4 synthase	protein-coding
170772	chr3	188558401	188558800	+	0	NA	intron (NR_164692, intron 5 of 9)	L2c|LINE|L2	10066	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
212938	chr7	130933801	130934080	+	0	NA	Intergenic	Intergenic	20476	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
106332	chr18	12979571	12980930	+	0	NA	intron (NM_031216, intron 6 of 8)	SVA_D|Retroposon|SVA	-11112	NM_032142	55125		NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
21283	chr1	204431391	204432330	+	0	NA	intron (NM_001377335, intron 30 of 35)	intron (NM_001377335, intron 30 of 35)	-20043	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
20118	chr1	192518771	192519130	+	0	NA	Intergenic	Intergenic	-56823	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
225383	chr9	35023201	35023480	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-17755	NM_001040411	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
198413	chr6	105993471	105993630	+	0	NA	Intergenic	Intergenic	-92786	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
228308	chr9	98121101	98122350	+	0	NA	3' UTR (NM_003389, exon 12 of 12)	3' UTR (NM_003389, exon 12 of 12)	-2503	NM_033219	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
233508	chr9	138278701	138279950	+	0	NA	Intergenic	Intergenic	62469	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
116901	chr19	18775651	18775950	+	0	NA	exon (NM_001098482, exon 14 of 15)	exon (NM_001098482, exon 14 of 15)	15505	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
77776	chr15	85891151	85891450	+	0	NA	Intergenic	Intergenic	65665	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
73574	chr15	44444171	44444430	+	0	NA	intron (NM_016396, intron 1 of 12)	L1MB3|LINE|L1	16671	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
126954	chr2	35307151	35307250	+	0	NA	Intergenic	AluY|SINE|Alu	-164205	NR_039629	100616475		NR_039629	ENSG00000265301	MIR548AD	-	microRNA 548ad	ncRNA
152256	chr22	20241271	20241430	+	0	NA	TTS (NM_023004)	TTS (NM_023004)	7861	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
195955	chr6	41941401	41942830	+	0	NA	promoter-TSS (NM_001136125)	promoter-TSS (NM_001136125)	-267	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
72780	chr15	39922451	39922800	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-2359	NM_007223	11245		NM_007223	ENSG00000166073	GPR176	HB-954	G protein-coupled receptor 176	protein-coding
149075	chr21	15733641	15734680	+	0	NA	intron (NM_001352560, intron 1 of 23)	intron (NM_001352560, intron 1 of 23)	4178	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
109257	chr19	527051	527350	+	0	NA	Intergenic	AluSx|SINE|Alu	-4560	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
239259	chrY	13433401	13433850	+	0	NA	intron (NM_001258265, intron 2 of 23)	L1M2|LINE|L1	-45552	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
167642	chr3	129606301	129607280	+	0	NA	promoter-TSS (NM_015103)	promoter-TSS (NM_015103)	-114	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
52110	chr12	54191171	54192330	+	0	NA	Intergenic	Intergenic	-2756	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
32943	chr10	110356001	110358080	+	0	NA	Intergenic	MIRb|SINE|MIR	-52120	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
94627	chr17	29929121	29930710	+	0	NA	promoter-TSS (NM_001145053)	promoter-TSS (NM_001145053)	12	NM_001145053	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
67787	chr14	73755211	73755800	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-3242	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
24530	chr1	244840401	244841280	+	0	NA	intron (NM_001312872, intron 2 of 4)	intron (NM_001312872, intron 2 of 4)	5182	NM_198076	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
14367	chr1	144101951	144102900	+	0	NA	Intergenic	(TGGCTGGCT)n|Simple_repeat|Simple_repeat	-128906	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
191483	chr6	11208321	11208580	+	0	NA	intron (NM_182966, intron 2 of 2)	intron (NM_182966, intron 2 of 2)	24218	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
126604	chr2	28784601	28785650	+	0	NA	intron (NM_206876, intron 6 of 8)	AluSc|SINE|Alu	-25709	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
116651	chr19	18338501	18338700	+	0	NA	Intergenic	AluJr|SINE|Alu	-1998	NM_001329477	54858		NM_017712	ENSG00000130517	PGPEP1	PAP-I|PGI|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
195605	chr6	37625851	37626150	+	0	NA	Intergenic	L3b|LINE|CR1	-70578	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
20811	chr1	201212121	201212580	+	0	NA	exon (NM_001164586, exon 12 of 24)	exon (NM_001164586, exon 12 of 24)	21526	NM_001367841	91156		NM_178275	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin like and fibronectin type III domain containing 1	protein-coding
81298	chr16	4684451	4684900	+	0	NA	intron (NM_001142289, intron 15 of 15)	intron (NM_001142289, intron 15 of 15)	-9018	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
227693	chr9	93013851	93014430	+	0	NA	non-coding (NR_121565, exon 2 of 3)	non-coding (NR_121565, exon 2 of 3)	804	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
179817	chr5	453121	453600	+	0	NA	intron (NM_007277, intron 3 of 12)	intron (NM_007277, intron 3 of 12)	10184	NM_007277	11336		NM_007277	ENSG00000180104	EXOC3	SEC6|SEC6L1|Sec6p	exocyst complex component 3	protein-coding
210792	chr7	100828571	100829230	+	0	NA	intron (NM_001363494, intron 1 of 10)	intron (NM_001363494, intron 1 of 10)	-1377	NM_004444	2050		NM_004444	ENSG00000196411	EPHB4	CMAVM2|HFASD|HTK|LMPHM7|MYK1|TYRO11	EPH receptor B4	protein-coding
98496	chr17	47315701	47315980	+	0	NA	intron (NR_110880, intron 2 of 2)	intron (NR_110880, intron 2 of 2)	7773	NR_110881	102724508		NR_110880	ENSG00000263293	EFCAB13-DT	THCAT158	EFCAB13 divergent transcript	ncRNA
97357	chr17	43298471	43298930	+	0	NA	Intergenic	AluSp|SINE|Alu	1531	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
80303	chr16	2266171	2266400	+	0	NA	intron (NM_080594, intron 1 of 7)	intron (NM_080594, intron 1 of 7)	1052	NM_001286625	10921		NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
82866	chr16	21528721	21528980	+	0	NA	Intergenic	AluSc8|SINE|Alu	-8406	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
196006	chr6	42008921	42009380	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	39744	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
102373	chr17	75531701	75532100	+	0	NA	intron (NM_004524, intron 1 of 24)	intron (NM_004524, intron 1 of 24)	6198	NM_001015002	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
14678	chr1	145826571	145826730	+	0	NA	exon (NM_001303456, exon 3 of 15)	exon (NM_001303456, exon 3 of 15)	2205	NM_001303456	10623		NM_006468	ENSG00000186141	POLR3C	C82|RPC3|RPC62	RNA polymerase III subunit C	protein-coding
6196	chr1	27454421	27454680	+	0	NA	intron (NM_006990, intron 1 of 8)	AluJo|SINE|Alu	35617	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
140257	chr2	232284871	232285030	+	0	NA	intron (NR_046477, intron 12 of 18)	intron (NR_046477, intron 12 of 18)	-93801	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
100075	chr17	58270571	58270730	+	0	NA	3' UTR (NM_000250, exon 12 of 12)	3' UTR (NM_000250, exon 12 of 12)	10285	NM_000250	4353		NM_000250	ENSG00000005381	MPO	-	myeloperoxidase	protein-coding
113522	chr19	10116871	10117030	+	0	NA	exon (NM_003755, exon 7 of 11)	exon (NM_003755, exon 7 of 11)	2949	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
85732	chr16	56661471	56661630	+	0	NA	Intergenic	Intergenic	3591	NM_005949	4494		NM_005949	ENSG00000198417	MT1F	MT1	metallothionein 1F	protein-coding
86001	chr16	57469221	57469480	+	0	NA	intron (NM_032940, intron 5 of 8)	intron (NM_032940, intron 5 of 8)	6671	NM_032940	5432		NM_002694	ENSG00000102978	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	RNA polymerase II subunit C	protein-coding
195861	chr6	41531371	41532450	+	0	NA	intron (NR_126415, intron 1 of 1)	intron (NR_126415, intron 1 of 1)	14333	NR_126417	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
146428	chr20	49597301	49597880	+	0	NA	Intergenic	L1ME4b|LINE|L1	-29453	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
131125	chr2	90390471	90390630	+	0	NA	Intergenic	Intergenic	-752643	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
234040	chrX	3876571	3876930	+	0	NA	intron (NR_146581, intron 1 of 3)	CpG	5563	NR_146578	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
160941	chr3	36903151	36904080	+	0	NA	intron (NM_014831, intron 1 of 22)	MER115|DNA|hAT-Tip100	41439	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
65355	chr14	50366201	50367200	+	0	NA	intron (NM_001282236, intron 2 of 8)	L2c|LINE|L2	30181	NM_001367065	8814		NM_004196	ENSG00000100490	CDKL1	KKIALRE|P42	cyclin dependent kinase like 1	protein-coding
227794	chr9	93138271	93138430	+	0	NA	Intergenic	Intergenic	-4099	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
176863	chr4	102614701	102615350	+	0	NA	intron (NM_001382625, intron 24 of 24)	L2|LINE|L2	-112539	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
209054	chr7	74740101	74740300	+	0	NA	intron (NM_001163636, intron 18 of 33)	intron (NM_001163636, intron 18 of 33)	-11282	NR_110044	101926943		NR_110044	ENSG00000232729	GTF2I-AS1	-	GTF2I antisense RNA 1	ncRNA
95785	chr17	38706451	38706600	+	0	NA	intron (NM_005937, intron 1 of 19)	intron (NM_005937, intron 1 of 19)	1252	NM_005937	4302		NM_005937	ENSG00000275023	MLLT6	AF17	MLLT6, PHD finger containing	protein-coding
129500	chr2	69627421	69627680	+	0	NA	intron (NM_001371577, intron 2 of 14)	L2a|LINE|L2	16188	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
28492	chr10	49953051	49953430	+	0	NA	promoter-TSS (NR_145778)	promoter-TSS (NR_145778)	-972	NR_145778	109617009		NR_145778	ENSG00000288603	SNORA74C-2	-	small nucleolar RNA, H/ACA box 74C-2	snoRNA
126703	chr2	30161301	30161840	+	0	NA	Intergenic	Intergenic	14563	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
19275	chr1	172725101	172725500	+	0	NA	Intergenic	MIRc|SINE|MIR	66197	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
177927	chr4	131975851	131976300	+	0	NA	Intergenic	SST1|Satellite|centr	211237	NR_125884	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
162697	chr3	48976671	48977030	+	0	NA	intron (NM_001349214, intron 11 of 15)	AluSz6|SINE|Alu	-13058	NM_177938	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
186526	chr5	138407671	138408330	+	0	NA	intron (NM_016604, intron 11 of 23)	LTR9|LTR|ERV1	-31057	NM_016606	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
56820	chr12	120221621	120221880	+	0	NA	exon (NM_001243756, exon 6 of 11)	exon (NM_001243756, exon 6 of 11)	20459	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
39592	chr11	61296501	61297230	+	0	NA	Intergenic	AluSz|SINE|Alu	-1549	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
90074	chr16	90010821	90011300	+	0	NA	promoter-TSS (NM_024043)	promoter-TSS (NM_024043)	-939	NM_024043	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
38017	chr11	35111701	35111900	+	0	NA	Intergenic	Intergenic	26232	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
68375	chr14	77799401	77800600	+	0	NA	promoter-TSS (NM_001142545)	promoter-TSS (NM_001142545)	-109	NM_020421	57143		NM_020421	ENSG00000063761	ADCK1	MCP2	aarF domain containing kinase 1	protein-coding
48089	chr12	7219701	7219980	+	0	NA	Intergenic	Intergenic	30154	NM_001351128	5830		NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
141812	chr20	329871	330050	+	0	NA	3' UTR (NM_006943, exon 1 of 1)	3' UTR (NM_006943, exon 1 of 1)	4389	NM_006943	6666		NM_006943	ENSG00000177732	SOX12	SOX22	SRY-box transcription factor 12	protein-coding
64011	chr14	22498851	22499180	+	0	NA	Intergenic	MARNA|DNA|TcMar-Mariner	-16056	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
189149	chr5	171367301	171367530	+	0	NA	Intergenic	AluSc8|SINE|Alu	1297	NR_145720	109616973		NR_145720	ENSG00000206909	SNORA70J	-	small nucleolar RNA, H/ACA box 70J	snoRNA
125982	chr2	25287151	25287880	+	0	NA	intron (NR_135490, intron 3 of 23)	intron (NR_135490, intron 3 of 23)	-35200	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
232077	chr9	133533001	133533500	+	0	NA	intron (NM_001145320, intron 1 of 18)	intron (NM_001145320, intron 1 of 18)	1086	NM_001145320	9719		NM_014694	ENSG00000197859	ADAMTSL2	ADAMTSL-2|GPHYSD1	ADAMTS like 2	protein-coding
102079	chr17	74957751	74958730	+	0	NA	intron (NM_030630, intron 11 of 18)	intron (NM_030630, intron 11 of 18)	-12449	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
156726	chr22	41798901	41799100	+	0	NA	intron (NM_152513, intron 30 of 30)	intron (NM_152513, intron 30 of 30)	-1679	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
65406	chr14	50815971	50816330	+	0	NA	intron (NM_020921, intron 3 of 30)	L1PA11|LINE|L1	-5647	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
29366	chr10	69650871	69651500	+	0	NA	Intergenic	Intergenic	20938	NM_145306	219738		NM_145306	ENSG00000171224	FAM241B	C10orf35	family with sequence similarity 241 member B	protein-coding
68423	chr14	81211571	81212280	+	0	NA	intron (NM_001278940, intron 2 of 9)	intron (NM_001278940, intron 2 of 9)	9034	NM_001278940	2957		NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding
143365	chr20	26208701	26209830	+	0	NA	promoter-TSS (NR_040095)	promoter-TSS (NR_040095)	-32	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
125213	chr2	10308701	10308900	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	5100	NM_134421	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
154424	chr22	35340801	35341080	+	0	NA	intron (NR_156428, intron 11 of 13)	intron (NR_156428, intron 11 of 13)	-4141	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
148882	chr21	8452701	8453300	+	0	NA	Intergenic	AluSp|SINE|Alu	11854	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
1322	chr1	2411001	2411200	+	0	NA	intron (NR_164636, intron 1 of 5)	intron (NR_164636, intron 1 of 5)	1464	NM_002617	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
104220	chr17	80634351	80634650	+	0	NA	intron (NM_020761, intron 2 of 33)	intron (NM_020761, intron 2 of 33)	89662	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
238721	chrX	154172351	154173630	+	0	NA	Intergenic	AluJb|SINE|Alu	-9606	NM_000513	2652		NM_000513	ENSG00000268221	OPN1MW	CBBM|CBD|COD5|GCP|GOP|OPN1MW1	opsin 1, medium wave sensitive	protein-coding
189092	chr5	170295151	170295800	+	0	NA	intron (NM_005565, intron 1 of 20)	MIRb|SINE|MIR	2302	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
2186	chr1	8527871	8528380	+	0	NA	intron (NM_012102, intron 8 of 23)	L1MC4|LINE|L1	-33212	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
121208	chr19	46609671	46610050	+	0	NA	3' UTR (NM_001329922, exon 6 of 6)	3' UTR (NM_001329922, exon 6 of 6)	7788	NM_001329922	808		NM_005184	ENSG00000160014	CALM3	CALM|CAM1|CAM2|CAMB|CPVT6|CaM|CaMIII|HEL-S-72|LQT16|PHKD|PHKD3	calmodulin 3	protein-coding
219856	chr8	84626251	84626350	+	0	NA	intron (NM_173848, intron 2 of 8)	intron (NM_173848, intron 2 of 8)	-79627	NM_001287244	138046		NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein like	protein-coding
218773	chr8	58978001	58978200	+	0	NA	intron (NM_014729, intron 1 of 8)	Tigger19a|DNA|TcMar-Tigger	141047	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
202972	chr6	161268001	161268200	+	0	NA	intron (NM_020133, intron 1 of 8)	MIR|SINE|MIR	5961	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
217448	chr8	28622071	28623430	+	0	NA	Intergenic	CpG	78714	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
228971	chr9	113520171	113521030	+	0	NA	intron (NM_144488, intron 17 of 25)	intron (NM_144488, intron 17 of 25)	-16011	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
116378	chr19	17938071	17938900	+	0	NA	intron (NM_138442, intron 2 of 4)	intron (NM_138442, intron 2 of 4)	3389	NM_138442	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
94974	chr17	32264001	32264400	+	0	NA	Intergenic	Intergenic	-1632	NM_001330181	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
8038	chr1	38474921	38475380	+	0	NA	promoter-TSS (NR_146761)	promoter-TSS (NR_146761)	-46	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
40808	chr11	64913201	64913700	+	0	NA	intron (NM_015104, intron 4 of 40)	intron (NM_015104, intron 4 of 40)	3759	NM_001367972	23130		NM_015104	ENSG00000110046	ATG2A	BLTP4A	autophagy related 2A	protein-coding
120391	chr19	43682351	43682450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12054	NM_001005376	5329		NM_002659	ENSG00000011422	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
59236	chr13	23800001	23800200	+	0	NA	intron (NM_005932, intron 16 of 18)	intron (NM_005932, intron 16 of 18)	-88768	NM_001014442								
60911	chr13	46174671	46174830	+	0	NA	intron (NM_002298, intron 1 of 15)	AluSq|SINE|Alu	7427	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
168108	chr3	138606651	138607300	+	0	NA	Intergenic	Intergenic	-1796	NM_001033032	55179		NM_018147	ENSG00000158234	FAIM	FAIM1	Fas apoptotic inhibitory molecule	protein-coding
33115	chr10	111431821	111431900	+	0	NA	Intergenic	AluYa5|SINE|Alu	317569	NR_159949	113633881		NR_159949		HEAT2	lnc-ADRA2A-1:1	HEart disease Associated Transcript 2	ncRNA
39261	chr11	57740921	57743030	+	0	NA	intron (NM_170746, intron 2 of 3)	CpG	484	NM_170746	280636		NM_170746	ENSG00000211450	SELENOH	C11orf31|C17orf10|SELH	selenoprotein H	protein-coding
107177	chr18	35573451	35574000	+	0	NA	Intergenic	Intergenic	-7197	NM_001384438	2589		NM_020474	ENSG00000141429	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
237179	chrX	107707521	107707980	+	0	NA	Intergenic	MIR3|SINE|MIR	8758	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
11509	chr1	90944051	90944150	+	0	NA	intron (NM_201269, intron 2 of 5)	intron (NM_201269, intron 2 of 5)	77408	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
34204	chr10	129101471	129102030	+	0	NA	Intergenic	Intergenic	188917	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
165183	chr3	72441651	72441950	+	0	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	4823	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
15501	chr1	150464021	150465130	+	0	NA	exon (NM_001297673, exon 9 of 11)	exon (NM_001297673, exon 9 of 11)	-22844	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
105964	chr18	5158201	5158400	+	0	NA	intron (NM_001330553, intron 1 of 1)	intron (NM_001330553, intron 1 of 1)	38957	NM_001145194	642597		NM_001145194	ENSG00000231824	AKAIN1	C18orf42	A-kinase anchor inhibitor 1	protein-coding
99362	chr17	49907171	49907480	+	0	NA	Intergenic	Intergenic	-59308	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
225089	chr9	33378771	33378930	+	0	NA	Intergenic	AluYe5|SINE|Alu	23718	NR_164778	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
218674	chr8	58212601	58212930	+	0	NA	Intergenic	L1M2|LINE|L1	59336	NR_105005	101929528		NR_105005	ENSG00000253281	LOC101929528	-	uncharacterized LOC101929528	ncRNA
163823	chr3	52446921	52448050	+	0	NA	Intergenic	Intergenic	-2382	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
172094	chr4	1051651	1052080	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	39401	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
135551	chr2	164841921	164842300	+	0	NA	promoter-TSS (NM_014900)	promoter-TSS (NM_014900)	-34	NM_001278460	22837		NM_014900	ENSG00000082438	COBLL1	COBLR1	cordon-bleu WH2 repeat protein like 1	protein-coding
40101	chr11	62802351	62802800	+	0	NA	intron (NM_006362, intron 3 of 20)	AluJr4|SINE|Alu	2865	NM_001081491	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
19622	chr1	179960001	179960450	+	0	NA	intron (NM_014810, intron 1 of 37)	MER6A|DNA|TcMar-Tigger	5415	NM_014810	9857		NM_014810	ENSG00000135837	CEP350	CAP350|GM133	centrosomal protein 350	protein-coding
13053	chr1	111441471	111442100	+	0	NA	intron (NR_133654, intron 8 of 8)	intron (NR_133654, intron 8 of 8)	7471	NM_024102	79084		NM_024102	ENSG00000116455	WDR77	HKMT1069|MEP-50|MEP50|Nbla10071|p44|p44/Mep50	WD repeat domain 77	protein-coding
235262	chrX	41719871	41720650	+	0	NA	intron (NM_001126055, intron 5 of 24)	intron (NM_001126055, intron 5 of 24)	-3921	NM_080817	27197		NM_080817	ENSG00000171657	GPR82	-	G protein-coupled receptor 82	protein-coding
164976	chr3	71302471	71302830	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	2121	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
147933	chr20	62924301	62925190	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	1760	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
132274	chr2	104852371	104852800	+	0	NA	intron (NR_131233, intron 1 of 3)	intron (NR_131233, intron 1 of 3)	598	NR_131233	100506421		NR_037883	ENSG00000233639	PANTR1	LINC01158|linc-Brn1a|linc-POU3F3	POU3F3 adjacent non-coding transcript 1	ncRNA
101621	chr17	68206101	68206600	+	0	NA	intron (NM_001346471, intron 1 of 6)	intron (NM_001346471, intron 1 of 6)	221	NM_001346472	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
38834	chr11	47317071	47317230	+	0	NA	intron (NR_164842, intron 29 of 33)	L1ME4b|LINE|L1	35552	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
26657	chr10	22598851	22599630	+	0	NA	intron (NM_001330062, intron 3 of 9)	L1MB8|LINE|L1	114868	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
4866	chr1	23757701	23758100	+	0	NA	intron (NM_003198, intron 10 of 10)	AluJb|SINE|Alu	14534	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
194768	chr6	34071971	34072200	+	0	NA	intron (NM_001282847, intron 2 of 9)	(CA)n|Simple_repeat|Simple_repeat	33882	NM_001256813	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
86873	chr16	67970751	67971730	+	0	NA	Intergenic	Intergenic	-2546	NM_001145962	6560		NM_005072	ENSG00000124067	SLC12A4	CTC-479C5.17|KCC1|hKCC1	solute carrier family 12 member 4	protein-coding
56738	chr12	120130601	120130980	+	0	NA	intron (NM_006836, intron 55 of 57)	intron (NM_006836, intron 55 of 57)	-14037	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
31363	chr10	93511151	93511700	+	0	NA	intron (NM_018131, intron 4 of 8)	intron (NM_018131, intron 4 of 8)	14813	NM_001127182	55165		NM_018131	ENSG00000138180	CEP55	C10orf3|CT111|MARCH|URCC6	centrosomal protein 55	protein-coding
22193	chr1	212381671	212381900	+	0	NA	intron (NR_165303, intron 4 of 8)	(AC)n|Simple_repeat|Simple_repeat	28967	NR_004389	692157		NR_004389	ENSG00000201544	SNORA16B	U98b	small nucleolar RNA, H/ACA box 16B	snoRNA
221838	chr8	128222551	128222650	+	0	NA	Intergenic	Intergenic	72484	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
2567	chr1	9786851	9788250	+	0	NA	intron (NM_014944, intron 1 of 17)	AluY|SINE|Alu	36415	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
120897	chr19	45592401	45593030	+	0	NA	intron (NM_005282, intron 1 of 1)	intron (NM_005282, intron 1 of 1)	-7913	NM_001017989	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
17584	chr1	156850571	156850930	+	0	NA	intron (NM_014215, intron 5 of 21)	AluSz|SINE|Alu	8367	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
143957	chr20	32825371	32825880	+	0	NA	intron (NM_012325, intron 1 of 6)	AluSx|SINE|Alu	5671	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
13786	chr1	117359751	117360180	+	0	NA	Intergenic	Intergenic	-7484	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
164588	chr3	66184401	66184600	+	0	NA	intron (NM_173471, intron 1 of 10)	intron (NM_173471, intron 1 of 10)	-36242	NM_001350993	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
137968	chr2	201187121	201187380	+	0	NA	intron (NM_001230, intron 2 of 7)	intron (NM_001230, intron 2 of 7)	4109	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
64640	chr14	31214771	31214930	+	0	NA	Intergenic	AluSc|SINE|Alu	-7057	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
175948	chr4	80709121	80709500	+	0	NA	intron (NM_001206997, intron 4 of 6)	intron (NM_001206997, intron 4 of 6)	-321398	NM_001201	651		NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
21438	chr1	205440521	205441900	+	0	NA	intron (NR_103783, intron 1 of 1)	intron (NR_103783, intron 1 of 1)	7188	NR_029893	442891		NR_029893	ENSG00000199059	MIR135B	MIRN135B|mir-135b	microRNA 135b	ncRNA
112844	chr19	7539871	7540350	+	0	NA	intron (NM_006702, intron 7 of 34)	intron (NM_006702, intron 7 of 34)	4393	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
63079	chr13	113179751	113180250	+	0	NA	exon (NM_001320656, exon 12 of 15)	exon (NM_001320656, exon 12 of 15)	21346	NM_001256134	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
43385	chr11	77068501	77069130	+	0	NA	intron (NM_004055, intron 1 of 12)	intron (NM_004055, intron 1 of 12)	1844	NM_004055	726		NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
124399	chr19	58403801	58404300	+	0	NA	Intergenic	Intergenic	3847	NR_149054	110806301		NR_149054	ENSG00000268307	LINC02560	-	long intergenic non-protein coding RNA 2560	ncRNA
163241	chr3	50272721	50273500	+	0	NA	promoter-TSS (NR_110697)	promoter-TSS (NR_110697)	-9	NM_001290062	7869		NM_004636	ENSG00000012171	SEMA3B	LUCA-1|SEMA5|SEMAA|SemA|semaV	semaphorin 3B	protein-coding
232226	chr9	134376351	134377080	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-2580	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
159229	chr3	12908871	12909180	+	0	NA	intron (NM_014869, intron 11 of 13)	intron (NM_014869, intron 11 of 13)	-23814	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
218120	chr8	41527971	41530030	+	0	NA	promoter-TSS (NM_032336)	promoter-TSS (NM_032336)	-261	NM_032336	84296		NM_032336	ENSG00000147536	GINS4	SLD5	GINS complex subunit 4	protein-coding
143607	chr20	31714951	31715250	+	0	NA	intron (NR_134257, intron 1 of 2)	AluY|SINE|Alu	-6407	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
96916	chr17	42147101	42147500	+	0	NA	intron (NM_201434, intron 1 of 6)	intron (NM_201434, intron 1 of 6)	7689	NM_201434	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
187256	chr5	141475751	141476330	+	0	NA	promoter-TSS (NM_032403)	promoter-TSS (NM_032403)	74	NM_002588	5098		NM_002588	ENSG00000240184	PCDHGC3	PC43|PCDH-GAMMA-C3|PCDH2	protocadherin gamma subfamily C, 3	protein-coding
158939	chr3	10144201	10145000	+	0	NA	intron (NM_001354723, intron 2 of 2)	AluJr|SINE|Alu	2822	NM_198156	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
56569	chr12	117119571	117120040	+	0	NA	intron (NR_120464, intron 2 of 2)	MIRc|SINE|MIR	20338	NR_120464	101928244		NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
118626	chr19	37209001	37209200	+	0	NA	intron (NM_152279, intron 1 of 4)	intron (NM_152279, intron 1 of 4)	1436	NM_152279	92285		NM_152279	ENSG00000245680	ZNF585B	SZFP41|Zfp27	zinc finger protein 585B	protein-coding
210825	chr7	100891901	100892730	+	0	NA	intron (NR_160407, intron 2 of 3)	intron (NR_160407, intron 2 of 3)	2291	NM_001367917	43		NM_000665	ENSG00000087085	ACHE	ACEE|ARACHE|N-ACHE|YT	acetylcholinesterase (Yt blood group)	protein-coding
84802	chr16	31066901	31067200	+	0	NA	intron (NM_024706, intron 1 of 2)	AluJo|SINE|Alu	-1962	NM_001172670	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
6234	chr1	27526901	27527600	+	0	NA	Intergenic	Intergenic	-37083	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
98285	chr17	46220901	46221280	+	0	NA	intron (NM_001193465, intron 2 of 15)	L1ME4b|LINE|L1	4277	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
49198	chr12	15856371	15856880	+	0	NA	Intergenic	Intergenic	-25762	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
91593	chr17	5243871	5244030	+	0	NA	Intergenic	AluSp|SINE|Alu	-9090	NM_001271842	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
88454	chr16	84982521	84982950	+	0	NA	intron (NM_017740, intron 3 of 7)	intron (NM_017740, intron 3 of 7)	28800	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
172406	chr4	1792151	1792250	+	0	NA	Intergenic	Intergenic	-1093	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
49405	chr12	22545751	22545850	+	0	NA	Intergenic	Intergenic	-1254	NM_001286173	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
88232	chr16	82138971	82139680	+	0	NA	Intergenic	L1PA2|LINE|L1	30899	NM_005792	10200		NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
49891	chr12	39375251	39375600	+	0	NA	intron (NM_001378440, intron 1 of 36)	LTR40c|LTR|ERVL	67695	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
198295	chr6	100230451	100230750	+	0	NA	Intergenic	Intergenic	233856	NM_001374769	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
120436	chr19	44164501	44165800	+	0	NA	promoter-TSS (NM_001146220)	promoter-TSS (NM_001146220)	-5	NM_016444	7769		NM_015919	ENSG00000167380	ZNF226	-	zinc finger protein 226	protein-coding
188551	chr5	156929401	156929800	+	0	NA	intron (NM_001146726, intron 4 of 7)	MLT1C|LTR|ERVL-MaLR	33626	NM_001146726	91937		NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T cell immunoglobulin and mucin domain containing 4	protein-coding
57761	chr12	122982071	122982230	+	0	NA	intron (NM_001278378, intron 4 of 5)	intron (NM_001278378, intron 4 of 5)	2090	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
75854	chr15	69578671	69579080	+	0	NA	Intergenic	L2b|LINE|L2	-13325	NR_126437	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
26912	chr10	26457351	26457900	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	19284	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
33534	chr10	119265371	119265530	+	0	NA	intron (NM_005308, intron 1 of 15)	MLT1A|LTR|ERVL-MaLR	57879	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
8994	chr1	44664551	44665050	+	0	NA	intron (NM_024587, intron 1 of 2)	MIR|SINE|MIR	6256	NR_145816	109623472		NR_145816		SNORD145	-	small nucleolar RNA, C/D box 145	snoRNA
37736	chr11	31804121	31804730	+	0	NA	promoter-TSS (NM_001368899)	promoter-TSS (NM_001368899)	-366	NM_001368901	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
4451	chr1	21331201	21331530	+	0	NA	intron (NM_001113348, intron 1 of 18)	AluSc|SINE|Alu	14139	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
227288	chr9	89399951	89400650	+	0	NA	intron (NM_001371200, intron 6 of 20)	intron (NM_001371200, intron 6 of 20)	79590	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
234454	chrX	17654971	17655330	+	0	NA	intron (NM_001291868, intron 1 of 7)	intron (NM_001291868, intron 1 of 7)	19650	NM_001291868	4810		NM_198270	ENSG00000188158	NHS	CTRCT40|CXN|SCML1	NHS actin remodeling regulator	protein-coding
46378	chr11	126267601	126267800	+	0	NA	exon (NM_003139, exon 3 of 14)	exon (NM_003139, exon 3 of 14)	1195	NM_003139	6734		NM_003139	ENSG00000182934	SRPRA	DP|SRPR|Sralpha	SRP receptor subunit alpha	protein-coding
78874	chr15	100592801	100593200	+	0	NA	intron (NR_148017, intron 1 of 6)	intron (NR_148017, intron 1 of 6)	9184	NR_148018	55180		NM_018148	ENSG00000140471	LINS1	LINS|MRT27|WINS1	lines homolog 1	protein-coding
158751	chr3	9356221	9356480	+	0	NA	Intergenic	AluJb|SINE|Alu	-6704	NM_015453	25917		NM_015453	ENSG00000134077	THUMPD3	-	THUMP domain containing 3	protein-coding
169681	chr3	172037671	172038030	+	0	NA	Intergenic	AluJo|SINE|Alu	-1728	NM_022763	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
212829	chr7	130458201	130458730	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-17255	NM_001257159	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
195367	chr6	36682571	36683400	+	0	NA	intron (NM_001220778, intron 1 of 2)	intron (NM_001220778, intron 1 of 2)	4271	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
164949	chr3	71247751	71248050	+	0	NA	intron (NM_001012505, intron 5 of 6)	MLT1K|LTR|ERVL-MaLR	-2823	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
175589	chr4	75668821	75669650	+	0	NA	intron (NM_203505, intron 1 of 11)	intron (NM_203505, intron 1 of 11)	3924	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
23200	chr1	227437771	227437930	+	0	NA	Intergenic	Intergenic	-119358	NM_003607	8476		NM_003607	ENSG00000143776	CDC42BPA	MRCK|MRCKA|MRCKalpha|PK428	CDC42 binding protein kinase alpha	protein-coding
210547	chr7	100317871	100318880	+	0	NA	intron (NM_001004351, intron 8 of 10)	intron (NM_001004351, intron 8 of 10)	10673	NM_001004351	441272		NM_001004351	ENSG00000214300	SPDYE3	SPDYB2	speedy/RINGO cell cycle regulator family member E3	protein-coding
3601	chr1	16241301	16241900	+	0	NA	Intergenic	Intergenic	-4417	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
209440	chr7	76396221	76396630	+	0	NA	intron (NM_080744, intron 6 of 10)	MER66B|LTR|ERV1	-1097	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
66812	chr14	64735271	64736030	+	0	NA	intron (NM_001308147, intron 12 of 16)	intron (NM_001308147, intron 12 of 16)	31226	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
44743	chr11	111955871	111956030	+	0	NA	intron (NM_001037954, intron 1 of 19)	L1MB2|LINE|L1	18607	NM_001037954	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
49356	chr12	22326701	22326900	+	0	NA	intron (NM_001304450, intron 1 of 3)	MIR|SINE|MIR	7914	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
105132	chr17	82230601	82231500	+	0	NA	intron (NM_004207, intron 1 of 4)	CpG	-1182	NM_001042423	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
19755	chr1	181479171	181479400	+	0	NA	Intergenic	Intergenic	-4232	NM_001205293	777		NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|DEE69|EIEE69|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
237146	chrX	107155551	107156330	+	0	NA	intron (NM_017681, intron 4 of 8)	L1PA2|LINE|L1	-37118	NM_001171080	55285		NM_018301	ENSG00000089682	RBM41	-	RNA binding motif protein 41	protein-coding
215427	chr7	157669851	157670150	+	0	NA	intron (NM_130842, intron 12 of 21)	intron (NM_130842, intron 12 of 21)	-95578	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
12932	chr1	110670871	110671590	+	0	NA	intron (NR_109845, intron 1 of 2)	intron (NR_109845, intron 1 of 2)	545	NR_109846	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
175660	chr4	76917721	76918080	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-19756	NM_001029870	345079		NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
137640	chr2	197390571	197390900	+	0	NA	3' UTR (NM_012433, exon 25 of 25)	3' UTR (NM_012433, exon 25 of 25)	44293	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
221467	chr8	124470821	124471130	+	0	NA	intron (NR_108047, intron 1 of 1)	MSTA|LTR|ERVL-MaLR	3379	NR_108048	101927612		NR_108047	ENSG00000245149	RNF139-DT	RNF139-AS1	RNF139 divergent transcript	ncRNA
236756	chrX	78643671	78644150	+	0	NA	Intergenic	L1PB2|LINE|L1	15418	NM_152694	203430		NM_152694	ENSG00000179300	RTL3	Mar3|Mart3|SIRH9|ZCCHC5|ZHC5	retrotransposon Gag like 3	protein-coding
222594	chr8	141003301	141003750	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-1446	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
223745	chr8	144509501	144510780	+	0	NA	intron (NR_130120, intron 1 of 3)	intron (NR_130120, intron 1 of 3)	1070	NM_138431	113655		NM_138431	ENSG00000167700	MFSD3	SLC33A2	major facilitator superfamily domain containing 3	protein-coding
148750	chr21	7753571	7753730	+	0	NA	intron (NM_058182, intron 2 of 3)	intron (NM_058182, intron 2 of 3)	8672	NM_058182	54065		NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B|SMIM11A|SMIM11B	small integral membrane protein 11	protein-coding
85474	chr16	50691571	50691930	+	0	NA	Intergenic	Intergenic	-1856	NR_163434	64127		NM_022162	ENSG00000167207	NOD2	ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS	nucleotide binding oligomerization domain containing 2	protein-coding
15429	chr1	150270901	150271100	+	0	NA	Intergenic	AluY|SINE|Alu	-1284	NM_001301039	79630		NM_024579	ENSG00000118292	C1orf54	-	chromosome 1 open reading frame 54	protein-coding
4185	chr1	19432421	19433250	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	51460	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
11421	chr1	89725871	89726030	+	0	NA	Intergenic	Intergenic	92830	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
183815	chr5	83076671	83078300	+	0	NA	promoter-TSS (NM_003401)	promoter-TSS (NM_003401)	-62	NM_022406	7518		NM_003401	ENSG00000152422	XRCC4	SSMED|hXRCC4	X-ray repair cross complementing 4	protein-coding
10710	chr1	75723221	75723480	+	0	NA	promoter-TSS (NM_001286042)	promoter-TSS (NM_001286042)	-997	NM_001286043	34		NM_000016	ENSG00000117054	ACADM	ACAD1|MCAD|MCADH	acyl-CoA dehydrogenase medium chain	protein-coding
194796	chr6	34230671	34231200	+	0	NA	Intergenic	L2a|LINE|L2	-5938	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
97159	chr17	42578401	42579230	+	0	NA	promoter-TSS (NR_045669)	promoter-TSS (NR_045669)	-984	NR_045670	29893		NM_013290	ENSG00000131470	PSMC3IP	GT198|HOP2|HUMGT198A|ODG3|TBPIP	PSMC3 interacting protein	protein-coding
14169	chr1	121393851	121394200	+	0	NA	intron (NR_104189, intron 2 of 3)	intron (NR_104189, intron 2 of 3)	3880	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
77256	chr15	81313101	81313500	+	0	NA	TTS (NM_001352686)	TTS (NM_001352686)	10841	NR_135013	80765		NM_030574	ENSG00000172345	STARD5	-	StAR related lipid transfer domain containing 5	protein-coding
137996	chr2	201254321	201254880	+	0	NA	intron (NM_033355, intron 2 of 9)	intron (NM_033355, intron 2 of 9)	-3435	NM_001080125	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
181362	chr5	40518501	40518700	+	0	NA	Intergenic	Intergenic	-161315	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
76453	chr15	74835171	74835900	+	0	NA	TTS (NR_104307)	TTS (NR_104307)	5172	NR_106942	102465531		NR_106942	ENSG00000275411	MIR6882	hsa-mir-6882	microRNA 6882	ncRNA
127318	chr2	38874021	38874580	+	0	NA	intron (NM_198963, intron 1 of 23)	AluJo|SINE|Alu	1634	NM_198963	90957		NM_144995	ENSG00000163214	DHX57	DDX57	DExH-box helicase 57	protein-coding
179311	chr4	177440421	177441500	+	0	NA	intron (NM_001171988, intron 1 of 8)	MIR|SINE|MIR	1477	NM_000027	175		NM_000027	ENSG00000038002	AGA	AGU|ASRG|GA	aspartylglucosaminidase	protein-coding
102046	chr17	74868401	74868600	+	0	NA	intron (NM_001258012, intron 2 of 11)	L2|LINE|L2	253	NM_001258016	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
61526	chr13	59901221	59901480	+	0	NA	intron (NM_001258370, intron 14 of 15)	L2a|LINE|L2	-111368	NR_109838	100874195		NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
189176	chr5	171408171	171408530	+	0	NA	intron (NM_002520, intron 10 of 10)	intron (NM_002520, intron 10 of 10)	-11297	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
159047	chr3	11532651	11532750	+	0	NA	intron (NM_001349238, intron 17 of 17)	AluJb|SINE|Alu	36098	NM_001128221	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
52451	chr12	55935721	55936650	+	0	NA	intron (NM_001351037, intron 1 of 23)	intron (NM_001351037, intron 1 of 23)	177	NM_001351037	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
46667	chr11	128718751	128719600	+	0	NA	intron (NM_001271010, intron 1 of 9)	MIRb|SINE|MIR	-23152	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
2865	chr1	11335501	11336500	+	0	NA	Intergenic	Intergenic	62802	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
196494	chr6	43635121	43636880	+	0	NA	intron (NM_014628, intron 1 of 2)	CpG	160	NM_014628	9587		NM_014628	ENSG00000124688	MAD2L1BP	CMT2|p31comet	MAD2L1 binding protein	protein-coding
62122	chr13	95641851	95642150	+	0	NA	exon (NM_198968, exon 4 of 23)	exon (NM_198968, exon 4 of 23)	2706	NM_198968	22873		NM_014934	ENSG00000134874	DZIP1	DZIP|DZIPt1|MMVP3|MVP3|SPGF47	DAZ interacting zinc finger protein 1	protein-coding
124093	chr19	55641501	55642300	+	0	NA	promoter-TSS (NM_001163423)	promoter-TSS (NM_001163423)	-152	NM_016202	51157		NM_016202	ENSG00000213015	ZNF580	-	zinc finger protein 580	protein-coding
125495	chr2	12514721	12516000	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-201512	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
150201	chr21	39370251	39370730	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-9754	NR_146614	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
219669	chr8	80505651	80506350	+	0	NA	intron (NM_023929, intron 2 of 6)	AluJo|SINE|Alu	19774	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
197243	chr6	69801121	69801380	+	0	NA	Intergenic	Intergenic	-4240	NM_018368	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
213774	chr7	140694751	140695250	+	0	NA	TTS (NR_024454)	TTS (NR_024454)	-1708	NM_004546	4708		NM_004546	ENSG00000090266	NDUFB2	AGGG|CI-AGGG	NADH:ubiquinone oxidoreductase subunit B2	protein-coding
180364	chr5	6830651	6830950	+	0	NA	Intergenic	(ACAC)n|Simple_repeat|Simple_repeat	-2879	NR_036242	100422999		NR_036242	ENSG00000283420	MIR4278	-	microRNA 4278	ncRNA
197327	chr6	73314671	73315150	+	0	NA	Intergenic	CpG	-4545	NR_027005	387097		NR_027005		C6orf147	-	chromosome 6 open reading frame 147	ncRNA
55894	chr12	109721771	109722150	+	0	NA	intron (NM_032829, intron 1 of 2)	MIRb|SINE|MIR	8135	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
129557	chr2	69893051	69893150	+	0	NA	promoter-TSS (NR_037862)	promoter-TSS (NR_037862)	-856	NR_037862	11017		NM_006857	ENSG00000124380	SNRNP27	27K|RY1	small nuclear ribonucleoprotein U4/U6.U5 subunit 27	protein-coding
3424	chr1	15836851	15838450	+	0	NA	intron (NR_024279, intron 1 of 1)	intron (NR_024279, intron 1 of 1)	-10057	NM_015001	23013		NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RATARS|RBM15C|SHARP	spen family transcriptional repressor	protein-coding
216783	chr8	22513771	22514180	+	0	NA	intron (NM_005605, intron 6 of 13)	AluSz6|SINE|Alu	-37952	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
109081	chr18	79948851	79949150	+	0	NA	intron (NM_001146343, intron 2 of 3)	intron (NM_001146343, intron 2 of 3)	2653	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
219580	chr8	79766301	79766680	+	0	NA	promoter-TSS (NM_001282851)	promoter-TSS (NM_001282851)	-15	NM_001282851	23462		NM_012258	ENSG00000164683	HEY1	BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1	hes related family bHLH transcription factor with YRPW motif 1	protein-coding
165458	chr3	98596921	98597380	+	0	NA	Intergenic	Intergenic	-3539	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
177620	chr4	121176271	121176630	+	0	NA	intron (NM_001128843, intron 3 of 12)	intron (NM_001128843, intron 3 of 12)	-12129	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
236552	chrX	72242001	72242280	+	0	NA	intron (NM_001170747, intron 3 of 3)	intron (NM_001170747, intron 3 of 3)	-3113	NM_017669	54821		NM_017669	ENSG00000186871	ERCC6L	PICH|RAD26L	ERCC excision repair 6 like, spindle assembly checkpoint helicase	protein-coding
99872	chr17	56597551	56597880	+	0	NA	Intergenic	CpG	4016	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
162990	chr3	49719071	49720230	+	0	NA	promoter-TSS (NM_198722)	promoter-TSS (NM_198722)	34	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
146872	chr20	51493321	51493710	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	-40538	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
200487	chr6	135423621	135423950	+	0	NA	intron (NM_017651, intron 19 of 27)	intron (NM_017651, intron 19 of 27)	73955	NM_001134831	54806		NM_017651	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
130489	chr2	85576251	85576550	+	0	NA	Intergenic	Intergenic	-1186	NM_003761	8673		NM_003761	ENSG00000118640	VAMP8	EDB|VAMP-8	vesicle associated membrane protein 8	protein-coding
140200	chr2	231685271	231686300	+	0	NA	Intergenic	Intergenic	-22740	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
217467	chr8	28778901	28779500	+	0	NA	intron (NR_026826, intron 10 of 14)	intron (NR_026826, intron 10 of 14)	77699	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
136261	chr2	174656771	174657030	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-22295	NM_001375839	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
194592	chr6	33448621	33448880	+	0	NA	intron (NM_006772, intron 18 of 18).2	intron (NM_006772, intron 18 of 18).2	-5826	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
35663	chr11	1866951	1867730	+	0	NA	intron (NM_001242932, intron 2 of 11)	(CA)n|Simple_repeat|Simple_repeat	-1366	NM_001013253	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
162646	chr3	48840501	48840700	+	0	NA	intron (NM_004157, intron 1 of 10)	AluY|SINE|Alu	7274	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
233621	chrX	385001	385200	+	0	NA	intron (NM_013239, intron 1 of 12)	MER49|LTR|ERV1	1807	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
26151	chr10	14007921	14008880	+	0	NA	5' UTR (NM_001318336, exon 1 of 24)	5' UTR (NM_001318336, exon 1 of 24)	150	NM_001318336	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
68890	chr14	91334501	91335380	+	0	NA	intron (NM_001080414, intron 10 of 29)	intron (NM_001080414, intron 10 of 29)	-81060	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
40607	chr11	64644821	64645680	+	0	NA	intron (NM_015080, intron 17 of 22)	intron (NM_015080, intron 17 of 22)	-1705	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
168824	chr3	152240321	152240580	+	0	NA	Intergenic	L1ME3G|LINE|L1	-3182	NM_001376839	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
115303	chr19	14677521	14678100	+	0	NA	Intergenic	LTR10F|LTR|ERV1	-2892	NM_001289158	84658		NM_032571	ENSG00000131355	ADGRE3	EMR3	adhesion G protein-coupled receptor E3	protein-coding
157252	chr22	43481471	43481830	+	0	NA	intron (NM_001362786, intron 4 of 6)	intron (NM_001362786, intron 4 of 6)	-34604	NR_046563	100874197		NR_046563		EFCAB6-AS1	-	EFCAB6 antisense RNA 1	ncRNA
213673	chr7	140037271	140037430	+	0	NA	intron (NR_130117, intron 6 of 10)	intron (NR_130117, intron 6 of 10)	25601	NM_022750	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
120879	chr19	45569851	45570500	+	0	NA	intron (NM_025136, intron 1 of 1)	intron (NM_025136, intron 1 of 1)	14627	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
32984	chr10	110511701	110511900	+	0	NA	TTS (NM_004419)	TTS (NM_004419)	13893	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
226981	chr9	82757251	82757370	+	0	NA	Intergenic	L1PA3|LINE|L1	305832	NM_152573	158158		NM_152573	ENSG00000165105	RASEF	RAB45|TSG	RAS and EF-hand domain containing	protein-coding
118388	chr19	35731101	35731300	+	0	NA	intron (NM_014727, intron 26 of 36)	intron (NM_014727, intron 26 of 36)	11252	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
2137	chr1	8351351	8351450	+	0	NA	Intergenic	Intergenic	33286	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
150080	chr21	37406501	37406800	+	0	NA	intron (NM_001347723, intron 1 of 10)	AluSz6|SINE|Alu	-12255	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
140081	chr2	231446501	231447000	+	0	NA	Intergenic	AluJr|SINE|Alu	9186	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
26858	chr10	24887201	24888380	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	64816	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
175355	chr4	69763321	69763580	+	0	NA	Intergenic	Intergenic	-2830	NM_014465	27284		NM_014465	ENSG00000173597	SULT1B1	ST1B1|ST1B2|SULT1B2	sulfotransferase family 1B member 1	protein-coding
61722	chr13	74120151	74120450	+	0	NA	intron (NM_007249, intron 1 of 7)	AluSx1|SINE|Alu	13629	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
124377	chr19	58382371	58382750	+	0	NA	Intergenic	Intergenic	-1530	NM_138466	116412		NM_138466	ENSG00000152475	ZNF837	-	zinc finger protein 837	protein-coding
68865	chr14	91308321	91308580	+	0	NA	exon (NM_001080414, exon 17 of 30)	exon (NM_001080414, exon 17 of 30)	-54570	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
151398	chr21	45984151	45984800	+	0	NA	intron (NM_001848, intron 3 of 34)	intron (NM_001848, intron 3 of 34)	2705	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
111318	chr19	3619551	3620600	+	0	NA	intron (NM_021231, intron 4 of 10)	intron (NM_021231, intron 4 of 10)	6715	NM_001080543	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
204642	chr7	5416751	5416850	+	0	NA	intron (NM_001080495, intron 2 of 29)	AluJb|SINE|Alu	6746	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
109200	chr19	408651	410250	+	0	NA	promoter-TSS (NM_001136263)	promoter-TSS (NM_001136263)	-303	NM_001136263	126567		NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium dependent domain containing 4C	protein-coding
59125	chr13	21365421	21365950	+	0	NA	intron (NR_046461, intron 3 of 4)	intron (NR_046461, intron 3 of 4)	-20826	NR_103841	100652865		NR_103840	ENSG00000224429	LINC00539	LINC00422	long intergenic non-protein coding RNA 539	ncRNA
159404	chr3	13471021	13471280	+	0	NA	Intergenic	L2a|LINE|L2	8903	NR_046690	100874101		NR_046690	ENSG00000244502	HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
73436	chr15	43183301	43183500	+	0	NA	intron (NM_001347027, intron 9 of 9)	L2a|LINE|L2	-2003	NR_045998	23582		NM_012142	ENSG00000166946	CCNDBP1	DIP1|GCIP|HHM	cyclin D1 binding protein 1	protein-coding
216684	chr8	22159521	22160280	+	0	NA	intron (NM_001385659, intron 2 of 7)	intron (NM_001385659, intron 2 of 7)	1421	NM_001385659	6440		NM_003018	ENSG00000168484	SFTPC	BRICD6|PSP-C|SFTP2|SMDP2|SP-C|SP5	surfactant protein C	protein-coding
29876	chr10	72694421	72694880	+	0	NA	intron (NM_001270680, intron 1 of 7)	intron (NM_001270680, intron 1 of 7)	2031	NM_001270680	90550		NM_138357	ENSG00000156026	MCU	C10orf42|CCDC109A|HsMCU	mitochondrial calcium uniporter	protein-coding
94828	chr17	31391071	31392330	+	0	NA	promoter-TSS (NM_032932)	promoter-TSS (NM_032932)	25	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
72805	chr15	40073821	40074480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	31936	NM_001003942	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
66958	chr14	65915171	65915400	+	0	NA	Intergenic	L1MB8|LINE|L1	444183	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
13582	chr1	116167921	116169250	+	0	NA	Intergenic	CpG	56830	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
72491	chr15	32651221	32651650	+	0	NA	intron (NM_001144757, intron 2 of 5).3	intron (NM_001144757, intron 2 of 5).3	9822	NM_001144757	6447		NM_003020	ENSG00000166922	SCG5	7B2|P7B2|SGNE1|SgV	secretogranin V	protein-coding
21793	chr1	207042451	207042550	+	0	NA	Intergenic	AluY|SINE|Alu	8708	NM_018566	55432		NM_018566	ENSG00000180667	YOD1	DUBA8|OTUD2|PRO0907	YOD1 deubiquitinase	protein-coding
135928	chr2	171875721	171875980	+	0	NA	intron (NR_047549, intron 2 of 16)	AluY|SINE|Alu	18394	NM_003705	8604		NM_003705	ENSG00000115840	SLC25A12	AGC1|ARALAR|DEE39|EIEE39	solute carrier family 25 member 12	protein-coding
192123	chr6	16745551	16746050	+	0	NA	intron (NR_152112, intron 1 of 1)	intron (NR_152112, intron 1 of 1)	14384	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
217838	chr8	37700071	37700930	+	0	NA	TTS (NM_025069)	TTS (NM_025069)	4718	NM_025069	80139		NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
186895	chr5	139569621	139570100	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	8521	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
115009	chr19	14068521	14069500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3776	NM_001291291	113230		NM_001291291	ENSG00000141854	MISP3	-	MISP family member 3	protein-coding
28965	chr10	63242701	63242900	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	26423	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
122875	chr19	50502151	50502650	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	8791	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
105513	chr17	83108651	83109150	+	0	NA	Intergenic	CpG	27754	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
122340	chr19	49200151	49200590	+	0	NA	exon (NM_001195227, exon 17 of 24)	exon (NM_001195227, exon 17 of 24)	42578	NM_001321283	54795		NM_017636	ENSG00000130529	TRPM4	EKVP6|LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
50509	chr12	47818471	47819300	+	0	NA	intron (NR_160436, intron 1 of 25)	intron (NR_160436, intron 1 of 25)	1018	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
207976	chr7	55363871	55364230	+	0	NA	Intergenic	Intergenic	-1287	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
69976	chr14	99899521	99899850	+	0	NA	intron (NM_001375411, intron 8 of 21)	intron (NM_001375411, intron 8 of 21)	-71737	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
159172	chr3	12812651	12813130	+	0	NA	intron (NM_012298, intron 3 of 12)	intron (NM_012298, intron 3 of 12)	16210	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
71833	chr15	22187001	22187350	+	0	NA	Intergenic	Intergenic	-8579	NR_135666	646370		NR_135666		IGHV1OR15-3	IGHV1OR153	immunoglobulin heavy variable 1/OR15-3 (pseudogene)	pseudo
20242	chr1	193418421	193419180	+	0	NA	Intergenic	Intergenic	114055	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
5317	chr1	25231921	25233900	+	0	NA	promoter-TSS (NM_207170)	promoter-TSS (NM_207170)	-408	NM_207170	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
57296	chr12	121651371	121652430	+	0	NA	intron (NM_173855, intron 5 of 5)	intron (NM_173855, intron 5 of 5)	17754	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
56493	chr12	116260901	116261850	+	0	NA	intron (NM_015335, intron 1 of 30)	AluSq|SINE|Alu	16318	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
82376	chr16	16027821	16028480	+	0	NA	intron (NM_004996, intron 5 of 30)	intron (NM_004996, intron 5 of 30)	78534	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
28990	chr10	63267471	63268050	+	0	NA	intron (NM_001322258, intron 2 of 24)	intron (NM_001322258, intron 2 of 24)	1463	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
124520	chr2	172251	172350	+	0	NA	Intergenic	Intergenic	84040	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
94121	chr17	28118421	28118900	+	0	NA	intron (NM_016231, intron 1 of 10)	intron (NM_016231, intron 1 of 10)	75983	NM_016231	51701		NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding
202788	chr6	159099951	159100250	+	0	NA	Intergenic	MIRb|SINE|MIR	-54948	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
87380	chr16	70450271	70450730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4095	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
101508	chr17	67719371	67719530	+	0	NA	intron (NM_001303272, intron 1 of 16)	AluSg|SINE|Alu	1514	NM_015462	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
235584	chrX	47568871	47569930	+	0	NA	intron (NM_001256196, intron 12 of 15)	intron (NM_001256196, intron 12 of 15)	8195	NM_001654	369		NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
79987	chr16	1816371	1817030	+	0	NA	intron (NM_001040427, intron 8 of 9)	intron (NM_001040427, intron 8 of 9)	10125	NM_005326	3029		NM_005326	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
31001	chr10	88385301	88386380	+	0	NA	intron (NM_018363, intron 4 of 6)	intron (NM_018363, intron 4 of 6)	197478	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
35009	chr11	540771	541350	+	0	NA	intron (NM_198075, intron 4 of 13)	intron (NM_198075, intron 4 of 13)	3533	NM_198075	115399		NM_198075	ENSG00000161328	LRRC56	CILD39|DNAAF12|oda8	leucine rich repeat containing 56	protein-coding
151366	chr21	45845151	45845450	+	0	NA	intron (NM_001348243, intron 3 of 15)	intron (NM_001348243, intron 3 of 15)	-2850	NM_001348244	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
13318	chr1	113742571	113743030	+	0	NA	intron (NM_001323042, intron 3 of 18)	Tigger3b|DNA|TcMar-Tigger	16355	NM_006608	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
174459	chr4	39719821	39720100	+	0	NA	intron (NM_001111113, intron 1 of 4)	intron (NM_001111113, intron 1 of 4)	21824	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
193414	chr6	30448071	30448650	+	0	NA	Intergenic	MIRc|SINE|MIR	-41149	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
218218	chr8	42031501	42032080	+	0	NA	intron (NM_001305878, intron 2 of 13)	AluSx1|SINE|Alu	-19960	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
91469	chr17	4881071	4881230	+	0	NA	exon (NM_153827, exon 4 of 32)	exon (NM_153827, exon 4 of 32)	-18386	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
95461	chr17	36183601	36184700	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-7526	NM_001001417	414059		NM_001001417	ENSG00000274808	TBC1D3B	PRC17|TBC1D3I|TBC1D3L	TBC1 domain family member 3B	protein-coding
14877	chr1	146478121	146478480	+	0	NA	Intergenic	Intergenic	-8032	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
132618	chr2	108613621	108614200	+	0	NA	intron (NM_001193482, intron 1 of 9)	intron (NM_001193482, intron 1 of 9)	6763	NM_001193482	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
197570	chr6	79699071	79699680	+	0	NA	intron (NM_031469, intron 3 of 3)	intron (NM_031469, intron 3 of 3)	68046	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
191158	chr6	4789621	4789880	+	0	NA	intron (NM_001368127, intron 1 of 5)	intron (NM_001368127, intron 1 of 5)	13346	NM_001368126	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
215902	chr8	8142321	8143510	+	0	NA	intron (NR_147089, intron 2 of 3)	HERVS71-int|LTR|ERV1	-53826	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
205885	chr7	25109121	25109380	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	16010	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
36298	chr11	3831421	3832030	+	0	NA	intron (NM_001665, intron 1 of 1)	intron (NM_001665, intron 1 of 1)	9234	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
125778	chr2	23686421	23687050	+	0	NA	intron (NM_052920, intron 6 of 13)	intron (NM_052920, intron 6 of 13)	240388	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
95800	chr17	38726101	38726430	+	0	NA	3' UTR (NM_005937, exon 20 of 20)	3' UTR (NM_005937, exon 20 of 20)	-4076	NM_001136498	284106		NM_001136498	ENSG00000277972	CISD3	MiNT|Miner2	CDGSH iron sulfur domain 3	protein-coding
61214	chr13	49517401	49517630	+	0	NA	intron (NR_135323, intron 4 of 11)	intron (NR_135323, intron 4 of 11)	20459	NM_001040444	51131		NM_001040443	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
203125	chr6	166751151	166751450	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	111225	NM_001006932	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
37532	chr11	18633911	18635230	+	0	NA	promoter-TSS (NM_194285)	promoter-TSS (NM_194285)	-228	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
90246	chr17	780401	780780	+	0	NA	intron (NM_016080, intron 1 of 8)	AluY|SINE|Alu	1690	NM_001366249	51031		NM_016080	ENSG00000167699	GLOD4	C17orf25|CGI-150|HC6|HC71	glyoxalase domain containing 4	protein-coding
211288	chr7	103150471	103150730	+	0	NA	Intergenic	Intergenic	-1501	NM_198990	222236		NM_198990	ENSG00000161048	NAPEPLD	C7orf18|FMP30|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding
70149	chr14	100288321	100288580	+	0	NA	Intergenic	Intergenic	11093	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
215652	chr8	403601	404180	+	0	NA	Intergenic	Intergenic	-2918	NM_012173	26260		NM_012173	ENSG00000147364	FBXO25	FBX25	F-box protein 25	protein-coding
132485	chr2	105936401	105937250	+	0	NA	Intergenic	(CACA)n|Simple_repeat|Simple_repeat	84978	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
4643	chr1	22130171	22130530	+	0	NA	intron (NM_030761, intron 1 of 4)	intron (NM_030761, intron 1 of 4)	12747	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
232393	chr9	135978751	135980080	+	0	NA	Intergenic	Intergenic	-18042	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
70347	chr14	101858871	101859950	+	0	NA	intron (NM_178587, intron 2 of 11)	intron (NM_178587, intron 2 of 11)	49547	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
33476	chr10	119073071	119073650	+	0	NA	intron (NM_003750, intron 3 of 21)	intron (NM_003750, intron 3 of 21)	7457	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
177402	chr4	112281801	112282380	+	0	NA	intron (NM_052864, intron 1 of 1)	THE1B|LTR|ERVL-MaLR	3814	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
189238	chr5	171965921	171966380	+	0	NA	intron (NM_012300, intron 1 of 12)	MSTA|LTR|ERVL-MaLR	40488	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
18882	chr1	168177051	168177150	+	0	NA	Intergenic	AluSg|SINE|Alu	-1862	NM_152902	261726		NM_152902	ENSG00000143155	TIPRL	TIP|TIP41|TIPRL1	TOR signaling pathway regulator	protein-coding
159068	chr3	11724651	11724980	+	0	NA	Intergenic	Intergenic	-4276	NM_014667	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
47831	chr12	6598521	6598900	+	0	NA	intron (NM_001273, intron 10 of 39)	AluSc8|SINE|Alu	7741	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
109814	chr19	1163221	1164050	+	0	NA	intron (NM_014963, intron 1 of 31)	CpG	10633	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
192770	chr6	26493221	26493600	+	0	NA	Intergenic	MER90|LTR|ERV1	-6893	NM_001732	696		NM_001732	ENSG00000124557	BTN1A1	BT|BTN|BTN1	butyrophilin subfamily 1 member A1	protein-coding
188928	chr5	160438201	160438800	+	0	NA	Intergenic	Intergenic	16590	NM_001282382	9232		NM_004219	ENSG00000164611	PTTG1	EAP1|ECRAR|HPTTG|PTTG|TUTR1	PTTG1 regulator of sister chromatid separation, securin	protein-coding
156522	chr22	41409901	41410650	+	0	NA	Intergenic	Intergenic	28333	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
223469	chr8	144023871	144024330	+	0	NA	intron (NM_198572, intron 1 of 4)	intron (NM_198572, intron 1 of 4)	11820	NM_001134374	375686		NM_198572	ENSG00000186583	SPATC1	SPATA15	spermatogenesis and centriole associated 1	protein-coding
39796	chr11	61960351	61960450	+	0	NA	intron (NR_134580, intron 9 of 10)	AluSx1|SINE|Alu	5165	NM_001363591	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
230095	chr9	127564551	127565050	+	0	NA	intron (NM_001035534, intron 1 of 13)	AluSx|SINE|Alu	4273	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
141731	chr2	241867721	241869830	+	0	NA	promoter-TSS (NM_173821)	promoter-TSS (NM_173821)	-954	NM_173821	285093		NM_173821	ENSG00000188011	RTP5	C2orf85|CXXC11|Z3CXXC5	receptor transporter protein 5 (putative)	protein-coding
66241	chr14	61341961	61343150	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	21112	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
151730	chr22	17769451	17770380	+	0	NA	intron (NM_001244567, intron 1 of 5)	intron (NM_001244567, intron 1 of 5)	4127	NM_197966	637		NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
47138	chr12	747601	747980	+	0	NA	Intergenic	AluSx3|SINE|Alu	-4789	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
117208	chr19	19401151	19402130	+	0	NA	intron (NM_001384535, intron 1 of 10)	intron (NM_001384535, intron 1 of 10)	-4035	NM_001384527	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
61655	chr13	73933921	73934400	+	0	NA	intron (NM_007249, intron 3 of 7)	L1MEc|LINE|L1	199769	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
179254	chr4	174632171	174632350	+	0	NA	Intergenic	Intergenic	-109362	NM_001256307	3248		NM_000860	ENSG00000164120	HPGD	15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1	15-hydroxyprostaglandin dehydrogenase	protein-coding
215535	chr7	158778771	158780000	+	0	NA	intron (NM_020728, intron 6 of 21)	FAM|SINE|Alu	50124	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
120846	chr19	45517001	45517730	+	0	NA	intron (NM_003370, intron 1 of 12)	intron (NM_003370, intron 1 of 12)	9886	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
162679	chr3	48928621	48929430	+	0	NA	TTS (NM_001349230)	TTS (NM_001349230)	-9640	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
52047	chr12	54014121	54014780	+	0	NA	Intergenic	Intergenic	-2438	NM_153693	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
107924	chr18	57628951	57629250	+	0	NA	Intergenic	MER41D|LTR|ERV1	-1231	NR_164148	100505549		NR_164148	ENSG00000267040	ATP8B1-AS1	-	ATP8B1 antisense RNA 1	ncRNA
46161	chr11	123068771	123069560	+	0	NA	TTS (NM_024769)	TTS (NM_024769)	-7029	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
229473	chr9	122094371	122094530	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1142	NM_194252	158135		NM_194252	ENSG00000175764	TTLL11	C9orf148|C9orf20|TTLL11-IT1|bA244O19.1	tubulin tyrosine ligase like 11	protein-coding
153901	chr22	30303551	30304030	+	0	NA	intron (NM_031937, intron 2 of 8)	intron (NM_031937, intron 2 of 8)	-14285	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
206131	chr7	27660521	27661180	+	0	NA	intron (NM_152740, intron 1 of 7)	intron (NM_152740, intron 1 of 7)	2033	NM_152740	11112		NM_152740	ENSG00000106049	HIBADH	NS5ATP1	3-hydroxyisobutyrate dehydrogenase	protein-coding
16036	chr1	152352071	152352230	+	0	NA	exon (NM_001014342, exon 3 of 3)	exon (NM_001014342, exon 3 of 3)	7856	NM_001014342	388698		NM_001014342	ENSG00000143520	FLG2	IFPS|PSS6	filaggrin 2	protein-coding
140814	chr2	236512721	236513380	+	0	NA	Intergenic	Intergenic	-5515	NM_001270584	79781		NM_024726	ENSG00000132321	IQCA1	4930465P12Rik|DRC11|IQCA	IQ motif containing with AAA domain 1	protein-coding
221448	chr8	124261351	124263430	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-14992	NR_125420	101927588		NR_125420	ENSG00000214803	LOC101927588	-	uncharacterized LOC101927588	ncRNA
144383	chr20	35160551	35160850	+	0	NA	intron (NM_001355008, intron 5 of 14)	L1PA7|LINE|L1	-11372	NM_006404	10544		NM_006404	ENSG00000101000	PROCR	CCCA|CCD41|EPCR	protein C receptor	protein-coding
143650	chr20	31868071	31868550	+	0	NA	intron (NM_001012644, intron 2 of 6)	L2b|LINE|L2	1921	NM_177991	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
170451	chr3	185912901	185913500	+	0	NA	Intergenic	Intergenic	24814	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
228645	chr9	107172201	107172630	+	0	NA	Intergenic	Intergenic	-69427	NR_126029	340512		NR_126029	ENSG00000230782	LOC340512	-	uncharacterized LOC340512	ncRNA
104118	chr17	80312671	80312830	+	0	NA	intron (NM_020954, intron 14 of 16)	intron (NM_020954, intron 14 of 16)	51898	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
161021	chr3	37907771	37908280	+	0	NA	intron (NM_005808, intron 1 of 6)	intron (NM_005808, intron 1 of 6)	46145	NM_001008392	10217		NM_005808	ENSG00000144677	CTDSPL	C3orf8|HYA22|PSR1|RBSP3|SCP3	CTD small phosphatase like	protein-coding
17543	chr1	156795671	156796030	+	0	NA	intron (NM_005973, intron 5 of 6)	intron (NM_005973, intron 5 of 6)	-19900	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
53088	chr12	57740471	57741600	+	0	NA	intron (NM_014770, intron 1 of 17)	intron (NM_014770, intron 1 of 17)	1126	NM_014770	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
182252	chr5	57184201	57184730	+	0	NA	intron (NM_001331037, intron 2 of 12)	MSTB|LTR|ERVL-MaLR	9017	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
8101	chr1	39175871	39176030	+	0	NA	intron (NM_012090, intron 1 of 92)	AluY|SINE|Alu	91783	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
395	chr1	1054171	1054330	+	0	NA	intron (NM_198576, intron 34 of 35)	intron (NM_198576, intron 34 of 35)	-5484	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
139515	chr2	224562601	224562800	+	0	NA	intron (NM_003590, intron 1 of 15)	MIR3|SINE|MIR	7255	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
112434	chr19	6359451	6359750	+	0	NA	Intergenic	AluSq|SINE|Alu	-1931	NM_006012	8192		NM_006012	ENSG00000125656	CLPP	DFNB81|PRLTS3	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding
78364	chr15	91407421	91407780	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-55739	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
45975	chr11	121462551	121463300	+	0	NA	intron (NM_003105, intron 1 of 47)	L2b|LINE|L2	10611	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
46868	chr11	133944551	133946030	+	0	NA	intron (NM_001277285, intron 2 of 19)	intron (NM_001277285, intron 2 of 19)	11678	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
153651	chr22	28799701	28801230	+	0	NA	exon (NM_001079539, exon 1 of 6)	exon (NM_001079539, exon 1 of 6)	107	NM_001079539	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
210568	chr7	100353621	100354300	+	0	NA	TTS (NR_103728)	TTS (NR_103728)	1642	NR_103728	101752334		NR_103728		PVRIG2P	-	PVR related immunoglobulin domain containing 2, pseudogene	pseudo
143900	chr20	32580701	32581630	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	4168	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
237222	chrX	109709101	109709680	+	0	NA	intron (NM_022977, intron 1 of 16)	intron (NM_022977, intron 1 of 16)	-23121	NR_158569	105373311		NR_158569		LOC105373311	-	uncharacterized LOC105373311	ncRNA
195348	chr6	36631221	36631480	+	0	NA	Intergenic	Intergenic	-8838	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
207588	chr7	44958901	44959120	+	0	NA	Intergenic	L1MB7|LINE|L1	20005	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
12430	chr1	103162471	103162630	+	0	NA	Intergenic	Intergenic	-54028	NM_080630	1301		NM_001854	ENSG00000060718	COL11A1	CO11A1|COLL6|DFNA37|STL2	collagen type XI alpha 1 chain	protein-coding
9513	chr1	51342821	51343280	+	0	NA	intron (NM_001144832, intron 1 of 17)	intron (NM_001144832, intron 1 of 17)	2066	NM_001144832	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
141609	chr2	241664401	241664730	+	0	NA	intron (NM_013325, intron 7 of 12)	intron (NM_013325, intron 7 of 12)	22250	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
71180	chr14	105048971	105049380	+	0	NA	TTS (NM_013345)	TTS (NM_013345)	16255	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
62304	chr13	99013901	99014100	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	1785	NM_001366677	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
153378	chr22	24545201	24545780	+	0	NA	intron (NM_031444, intron 4 of 5)	MIRb|SINE|MIR	9648	NM_001284257	83606		NM_031444	ENSG00000138867	GUCD1	C22orf13|LLN4	guanylyl cyclase domain containing 1	protein-coding
51710	chr12	53200501	53201250	+	0	NA	intron (NR_104181, intron 1 of 11)	AluSx|SINE|Alu	6376	NR_104181	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
48955	chr12	12807571	12809080	+	0	NA	Intergenic	Intergenic	-5021	NM_016355	51202		NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD-box helicase 47	protein-coding
144089	chr20	33733901	33734350	+	0	NA	intron (NM_001282933, intron 1 of 14)	intron (NM_001282933, intron 1 of 14)	2129	NM_001282933	84905		NM_032819	ENSG00000131061	ZNF341	HIES3	zinc finger protein 341	protein-coding
235036	chrX	40082751	40084030	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	14568	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
199911	chr6	127872121	127872480	+	0	NA	intron (NM_001164687, intron 1 of 5).2	AluSx1|SINE|Alu	-17112	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
132992	chr2	111530121	111530980	+	0	NA	Intergenic	Intergenic	-35389	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
77572	chr15	84986501	84986700	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	4626	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
284	chr1	940171	941000	+	0	NA	intron (NM_152486, intron 7 of 13)	CpG	14854	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
107199	chr18	36033701	36033900	+	0	NA	exon (NM_001303413, exon 2 of 7)	exon (NM_001303413, exon 2 of 7)	33759	NM_001303411	55197		NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
22016	chr1	209937621	209938180	+	0	NA	promoter-TSS (NM_001256006)	promoter-TSS (NM_001256006)	-274	NM_001256006	255928		NM_153262	ENSG00000143469	SYT14	SCAR11|sytXIV	synaptotagmin 14	protein-coding
237197	chrX	107827871	107828030	+	0	NA	intron (NM_012216, intron 1 of 9)	MSTA|LTR|ERVL-MaLR	2084	NM_052817	11043		NM_012216	ENSG00000080561	MID2	FXY2|MRX101|RNF60|TRIM1|XLID101	midline 2	protein-coding
211693	chr7	106717751	106718580	+	0	NA	Intergenic	Intergenic	-57007	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
38140	chr11	35342301	35342500	+	0	NA	intron (NM_001195728, intron 1 of 11)	intron (NM_001195728, intron 1 of 11)	77158	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
25585	chr10	8039701	8040680	+	0	NA	Intergenic	Intergenic	12301	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
141959	chr20	1301901	1302130	+	0	NA	intron (NM_014723, intron 5 of 5)	L1MB7|LINE|L1	11658	NM_015685	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
58913	chr13	19717651	19717750	+	0	NA	intron (NM_001354909, intron 6 of 8)	AluSx1|SINE|Alu	65245	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
26410	chr10	17067571	17067730	+	0	NA	intron (NM_001081, intron 21 of 66)	L1MEc|LINE|L1	62161	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
107042	chr18	32128201	32128400	+	0	NA	intron (NM_001191324, intron 6 of 6)	AluSz6|SINE|Alu	35694	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
1771	chr1	6032551	6032650	+	0	NA	intron (NM_172130, intron 1 of 14)	AluSc|SINE|Alu	-2088	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
89904	chr16	89696251	89697100	+	0	NA	TTS (NM_052988)	TTS (NM_052988)	5030	NM_152339	124044		NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
212410	chr7	128165921	128166250	+	0	NA	Intergenic	Intergenic	-41787	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
124871	chr2	8304771	8305130	+	0	NA	intron (NR_034135, intron 2 of 8)	intron (NR_034135, intron 2 of 8)	23469	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
210596	chr7	100396651	100397930	+	0	NA	intron (NM_013439, intron 3 of 6)	intron (NM_013439, intron 3 of 6)	23803	NM_013439	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
202294	chr6	157211001	157211400	+	0	NA	TTS (NM_001374820)	TTS (NM_001374820)	112319	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
84961	chr16	31402671	31403230	+	0	NA	intron (NM_001318185, intron 6 of 29)	ORSL-2b|DNA|hAT-Tip100	9615	NM_001318185	3681		NM_005353	ENSG00000156886	ITGAD	ADB2|CD11D	integrin subunit alpha D	protein-coding
159096	chr3	12483551	12485050	+	0	NA	promoter-TSS (NM_001145394)	promoter-TSS (NM_001145394)	-132	NM_001321277	80746		NM_025265	ENSG00000154743	TSEN2	PCH2B|SEN2|SEN2L	tRNA splicing endonuclease subunit 2	protein-coding
197821	chr6	87738841	87739650	+	0	NA	Intergenic	Intergenic	-37012	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
119016	chr19	38906271	38906680	+	0	NA	intron (NR_161470, intron 3 of 4)	AluY|SINE|Alu	5683	NM_001243212	643669		NM_001243212	ENSG00000262484	CCER2	-	coiled-coil glutamate rich protein 2	protein-coding
78928	chr15	101246871	101248050	+	0	NA	intron (NM_014918, intron 1 of 2)	intron (NM_014918, intron 1 of 2)	4588	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
63590	chr14	20476001	20476300	+	0	NA	intron (NM_000270, intron 5 of 5)	AluJo|SINE|Alu	6744	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
171145	chr3	195556221	195556680	+	0	NA	Intergenic	Intergenic	-13125	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
85536	chr16	53071951	53072450	+	0	NA	intron (NR_168111, intron 2 of 4)	intron (NR_168111, intron 2 of 4)	17209	NR_168120	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
181530	chr5	43063551	43063850	+	0	NA	intron (NR_104651, intron 2 of 2)	intron (NR_104651, intron 2 of 2)	3271	NR_034127	100132356		NM_175919		LOC100132356	-	uncharacterized LOC100132356	ncRNA
148707	chr21	6481951	6482250	+	0	NA	Intergenic	Intergenic	-13479	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
209830	chr7	88789471	88789630	+	0	NA	intron (NM_181646, intron 1 of 3)	intron (NM_181646, intron 1 of 3)	6187	NM_152706	219557		NM_152706	ENSG00000164645	TEX47	C7orf62|DYBLUF	testis expressed 47	protein-coding
134481	chr2	143258101	143259000	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	129131	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
113726	chr19	10465451	10465750	+	0	NA	intron (NM_001111307, intron 14 of 14)	intron (NM_001111307, intron 14 of 14)	12668	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
57485	chr12	122081521	122082100	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	3054	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
92012	chr17	7461371	7463230	+	0	NA	exon (NM_001128833, exon 4 of 4).2	exon (NM_001128833, exon 4 of 4).2	17239	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
232099	chr9	133682471	133682830	+	0	NA	intron (NM_001134707, intron 17 of 20)	intron (NM_001134707, intron 17 of 20)	-25242	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
44784	chr11	112588101	112588450	+	0	NA	Intergenic	Intergenic	-32473	NR_104155	387810		NR_104155	ENSG00000255484	LINC02764	-	long intergenic non-protein coding RNA 2764	ncRNA
102097	chr17	74983471	74983630	+	0	NA	Intergenic	L1MB3|LINE|L1	-4082	NM_014603	30850		NM_014603	ENSG00000109089	CDR2L	HUMPPA	cerebellar degeneration related protein 2 like	protein-coding
175967	chr4	81467201	81468050	+	0	NA	intron (NM_001300736, intron 1 of 12)	intron (NM_001300736, intron 1 of 12)	4282	NM_152545	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
137947	chr2	201128801	201129400	+	0	NA	promoter-TSS (NM_001351592)	promoter-TSS (NM_001351592)	135	NM_001308042	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
207949	chr7	52328471	52328630	+	0	NA	Intergenic	L1P2|LINE|L1	-707083	NM_182595	285877		NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin like 12	protein-coding
86363	chr16	66547771	66547930	+	0	NA	intron (NM_001271935, intron 2 of 7)	MIRb|SINE|MIR	2272	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
236635	chrX	74609921	74610280	+	0	NA	intron (NM_016120, intron 1 of 3)	Charlie23a|DNA|hAT-Charlie	4524	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
63565	chr14	20413101	20414230	+	0	NA	promoter-TSS (NM_001319035)	promoter-TSS (NM_001319035)	-164	NM_001319035	7011		NM_007110	ENSG00000129566	TEP1	TLP1|TP1|TROVE1|VAULT2|p240	telomerase associated protein 1	protein-coding
177174	chr4	108155351	108156400	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	10922	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
31873	chr10	100183501	100183980	+	0	NA	intron (NR_144755, intron 2 of 11)	intron (NR_144755, intron 2 of 11)	2289	NM_001100626	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
154209	chr22	31493971	31494580	+	0	NA	Intergenic	Intergenic	-1864	NM_001258325	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
60152	chr13	39955951	39956650	+	0	NA	Intergenic	Intergenic	-225509	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
94730	chr17	30767301	30767750	+	0	NA	intron (NR_144395, intron 6 of 9)	AluJb|SINE|Alu	57167	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
160675	chr3	32177001	32178150	+	0	NA	Intergenic	L2b|LINE|L2	-61104	NM_001320308	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
48437	chr12	9698771	9698930	+	0	NA	non-coding (NR_036693, exon 4 of 4)	non-coding (NR_036693, exon 4 of 4)	29137	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
232142	chr9	134035421	134035680	+	0	NA	intron (NM_007371, intron 10 of 11)	intron (NM_007371, intron 10 of 11)	10069	NM_001355256	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
56075	chr12	110605301	110606150	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8404	NM_001319681	79600		NM_024549	ENSG00000204852	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
80061	chr16	1977621	1978050	+	0	NA	intron (NM_006453, intron 18 of 21)	intron (NM_006453, intron 18 of 21)	3634	NM_172168	124056		NM_144603	ENSG00000196408	NOXO1	P41NOX|P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28	NADPH oxidase organizer 1	protein-coding
50421	chr12	47396201	47396400	+	0	NA	Intergenic	Intergenic	-18708	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
194747	chr6	33888051	33888410	+	0	NA	Intergenic	Intergenic	8677	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
186722	chr5	139262471	139263030	+	0	NA	Intergenic	Intergenic	-11002	NM_001282278	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
211794	chr7	107742901	107744780	+	0	NA	promoter-TSS (NM_024814)	promoter-TSS (NM_024814)	143	NR_024199	79872		NM_024814	ENSG00000105879	CBLL1	HAKAI|RNF188	Cbl proto-oncogene like 1	protein-coding
133500	chr2	119958871	119959030	+	0	NA	intron (NM_002830, intron 22 of 26)	Tigger17a|DNA|TcMar-Tigger	-54127	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
128300	chr2	54629921	54630900	+	0	NA	intron (NM_178313, intron 14 of 30)	intron (NM_178313, intron 14 of 30)	72016	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
54574	chr12	92391751	92392050	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	-29631	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
216527	chr8	20865601	20865800	+	0	NA	Intergenic	L2b|LINE|L2	-87933	NR_130774	102467222		NR_130773	ENSG00000253147	LINC03023	-	long intergenic non-protein coding RNA 3023	ncRNA
149915	chr21	36152971	36153730	+	0	NA	intron (NR_038892, intron 1 of 3)	AluJb|SINE|Alu	2958	NR_038893	100506428		NR_038892	ENSG00000236830	CBR3-AS1	PlncRNA-1|PlncRNA1	CBR3 antisense RNA 1	ncRNA
182462	chr5	62329221	62329480	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	23144	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
44929	chr11	115975601	115975800	+	0	NA	Intergenic	Intergenic	-215500	NR_034148	283143		NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
8832	chr1	43058551	43058950	+	0	NA	Intergenic	Intergenic	-89154	NM_001101376	440585		NM_001101376	ENSG00000186973	CFAP144	FAM183A	cilia and flagella associated protein 144	protein-coding
176489	chr4	90128221	90128880	+	0	NA	intron (NM_001145065, intron 1 of 10)	intron (NM_001145065, intron 1 of 10)	1156	NM_001145065	401145		NM_207491	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine rich protein 1	protein-coding
167363	chr3	128779351	128779780	+	0	NA	intron (NM_004637, intron 1 of 5)	LTR26D|LTR|ERV1	53382	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
170261	chr3	184258671	184259180	+	0	NA	TTS (NM_033259)	TTS (NM_033259)	2628	NM_033259	94032		NM_033259	ENSG00000163888	CAMK2N2	CAM-KIIN|CAMKIIN	calcium/calmodulin dependent protein kinase II inhibitor 2	protein-coding
19394	chr1	174114901	174115180	+	0	NA	Intergenic	Intergenic	44247	NR_121197	102724601		NR_121197	ENSG00000227373	RABGAP1L-DT	-	RABGAP1L divergent transcript	ncRNA
193848	chr6	31536301	31536500	+	0	NA	promoter-TSS (NR_003140)	promoter-TSS (NR_003140)	49	NR_003140	692233		NR_003140	ENSG00000201785	SNORD117	U83	small nucleolar RNA, C/D box 117	snoRNA
144123	chr20	33998971	33999130	+	0	NA	intron (NM_016732, intron 1 of 9)	AluSx1|SINE|Alu	-4683	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
205743	chr7	23501471	23502350	+	0	NA	Intergenic	AluSx1|SINE|Alu	11522	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
60483	chr13	41231721	41232450	+	0	NA	intron (NM_004294, intron 7 of 9)	AluJb|SINE|Alu	31491	NM_004294	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
182575	chr5	65957951	65958250	+	0	NA	intron (NM_001253697, intron 1 of 25)	SVA_C|Retroposon|SVA	-12527	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
47112	chr12	674261	675650	+	0	NA	Intergenic	AluJb|SINE|Alu	-11510	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
163935	chr3	52702351	52703200	+	0	NA	intron (NM_018446, intron 1 of 9)	intron (NM_018446, intron 1 of 9)	923	NM_152932	55830		NM_018446	ENSG00000016864	GLT8D1	AD-017|MSTP139	glycosyltransferase 8 domain containing 1	protein-coding
195594	chr6	37555301	37555500	+	0	NA	promoter-TSS (NR_039669)	promoter-TSS (NR_039669)	22	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
126595	chr2	28771821	28772580	+	0	NA	intron (NM_206876, intron 2 of 8)	AluSz|SINE|Alu	20370	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
100915	chr17	64463851	64464230	+	0	NA	intron (NM_001085423, intron 5 of 9)	AluSg|SINE|Alu	14925	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
86097	chr16	57646521	57647650	+	0	NA	intron (NM_001370454, intron 2 of 13)	G-rich|Low_complexity|Low_complexity	7593	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
179464	chr4	184459321	184460030	+	0	NA	intron (NM_002199, intron 1 of 8)	L1MB4|LINE|L1	14875	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
147825	chr20	62728251	62729150	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	19864	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
2854	chr1	11275871	11276030	+	0	NA	intron (NM_001330350, intron 1 of 1)	L2a|LINE|L2	2752	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
138426	chr2	205706851	205707180	+	0	NA	intron (NM_201264, intron 2 of 8)	intron (NM_201264, intron 2 of 8)	24514	NM_201267	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
29319	chr10	69359271	69360550	+	0	NA	exon (NM_033500, exon 7 of 22)	exon (NM_033500, exon 7 of 22)	41063	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
40029	chr11	62675751	62676250	+	0	NA	TTS (NM_001286078)	TTS (NM_001286078)	3073	NM_001286077	51035		NM_015853	ENSG00000162191	UBXN1	2B28|SAKS1|UBXD10	UBX domain protein 1	protein-coding
205644	chr7	22726271	22727350	+	0	NA	promoter-TSS (NM_001318095)	promoter-TSS (NM_001318095)	-390	NM_001318095	3569		NM_000600	ENSG00000136244	IL6	BSF-2|BSF2|CDF|HGF|HSF|IFN-beta-2|IFNB2|IL-6	interleukin 6	protein-coding
223259	chr8	143705521	143705780	+	0	NA	Intergenic	CpG	-2401	NR_134306	101928160		NR_134306	ENSG00000181135	LOC101928160	-	uncharacterized LOC101928160	ncRNA
35974	chr11	2854901	2855500	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	6369	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
150779	chr21	43814901	43815650	+	0	NA	Intergenic	Intergenic	-2708	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
134048	chr2	131152301	131152750	+	0	NA	Intergenic	Intergenic	47678	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
191869	chr6	15296421	15297080	+	0	NA	intron (NM_001267040, intron 1 of 17)	L1MC4|LINE|L1	47895	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
67902	chr14	74575061	74575500	+	0	NA	intron (NM_000428, intron 3 of 35)	intron (NM_000428, intron 3 of 35)	36957	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
222367	chr8	133575471	133576650	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-4173	NM_173344	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
66637	chr14	63858471	63858630	+	0	NA	intron (NM_015180, intron 1 of 114)	AluSc8|SINE|Alu	5546	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
33343	chr10	116849271	116849830	+	0	NA	promoter-TSS (NM_001242699)	promoter-TSS (NM_001242699)	51	NM_001242699	387712		NM_001242699	ENSG00000188316	ENO4	C10orf134|ENOS	enolase 4	protein-coding
67371	chr14	69762321	69762980	+	0	NA	Intergenic	AluSx3|SINE|Alu	-4492	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
95204	chr17	35238651	35239400	+	0	NA	Intergenic	Intergenic	-4047	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
229508	chr9	122346701	122347530	+	0	NA	Intergenic	CpG	-23418	NM_001271368	5742		NM_000962	ENSG00000095303	PTGS1	COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS	prostaglandin-endoperoxide synthase 1	protein-coding
103493	chr17	78381471	78382450	+	0	NA	intron (NR_111989, intron 1 of 8)	L2c|LINE|L2	3311	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
224739	chr9	21793471	21793830	+	0	NA	Intergenic	L2c|LINE|L2	-8986	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
61810	chr13	75632401	75633000	+	0	NA	intron (NM_005358, intron 2 of 29)	intron (NM_005358, intron 2 of 29)	3294	NR_120411	101927155		NR_120410	ENSG00000261105	LMO7-AS1	UCHL3-AS1	LMO7 antisense RNA 1	ncRNA
184820	chr5	111261921	111262650	+	0	NA	intron (NM_001744, intron 1 of 10)	MER67D|LTR|ERV1	37901	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
55290	chr12	103401551	103401650	+	0	NA	intron (NR_103526, intron 3 of 10)	intron (NR_103526, intron 3 of 10)	94368	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
191735	chr6	13723771	13724330	+	0	NA	Intergenic	LTR91|LTR|ERVL	-12215	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
180579	chr5	14817241	14817780	+	0	NA	intron (NM_054027, intron 1 of 11)	intron (NM_054027, intron 1 of 11)	8502	NR_039780	100616271		NR_039780	ENSG00000264792	MIR4637	-	microRNA 4637	ncRNA
38954	chr11	47525451	47525950	+	0	NA	promoter-TSS (NM_001376369)	promoter-TSS (NM_001376369)	-996	NM_001376369	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
137112	chr2	190995051	190995150	+	0	NA	exon (NM_001384880, exon 10 of 24)	exon (NM_001384880, exon 10 of 24)	19071	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
82819	chr16	21488021	21488680	+	0	NA	intron (NR_027155, intron 1 of 28)	intron (NR_027155, intron 1 of 28)	-13176	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
27802	chr10	35642051	35642680	+	0	NA	promoter-TSS (NM_031866)	promoter-TSS (NM_031866)	-931	NM_031866	8325		NM_031866	ENSG00000177283	FZD8	FZ-8|hFZ8	frizzled class receptor 8	protein-coding
232917	chr9	136868271	136868630	+	0	NA	Intergenic	AluSc|SINE|Alu	-2114	NM_153200	8721		NM_003792	ENSG00000107223	EDF1	CFAP280|EDF-1|MBF1	endothelial differentiation related factor 1	protein-coding
147547	chr20	59933051	59934390	+	0	NA	promoter-TSS (NM_001190826)	promoter-TSS (NM_001190826)	-59	NM_001190826	63939		NM_022106	ENSG00000196227	FAM217B	C20orf177|dJ551D2.5	family with sequence similarity 217 member B	protein-coding
102919	chr17	76572351	76572450	+	0	NA	intron (NM_006456, intron 5 of 8)	MIR|SINE|MIR	10767	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
224865	chr9	31259801	31260300	+	0	NA	Intergenic	Intergenic	121440	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
85386	chr16	50286201	50286730	+	0	NA	intron (NM_001114, intron 1 of 25)	Charlie15a|DNA|hAT-Charlie	-6151	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
171306	chr3	195959721	195960250	+	0	NA	TTS (NR_003264)	TTS (NR_003264)	30294	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
21910	chr1	207825671	207827180	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-3722	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
88142	chr16	81627871	81628030	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	16602	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
213233	chr7	133695451	133695560	+	0	NA	intron (NM_021807, intron 10 of 17)	intron (NM_021807, intron 10 of 17)	129383	NR_120513	101928861		NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
55265	chr12	102484421	102484700	+	0	NA	Intergenic	Intergenic	-3997	NM_001111285	3479		NM_000618	ENSG00000017427	IGF1	IGF|IGF-I|IGFI|MGF	insulin like growth factor 1	protein-coding
234582	chrX	19767951	19768450	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	31573	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
152775	chr22	21791721	21792180	+	0	NA	intron (NM_138957, intron 4 of 7)	L1MC4|LINE|L1	-56156	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
204228	chr7	2536671	2537200	+	0	NA	TTS (NR_146879)	TTS (NR_146879)	9861	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
3944	chr1	18581401	18581650	+	0	NA	Intergenic	Intergenic	-49321	NM_002584	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
221200	chr8	120758001	120758400	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-3053	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
28713	chr10	61780001	61780450	+	0	NA	Intergenic	Intergenic	117264	NM_173554	219621		NM_173554	ENSG00000183346	CABCOCO1	ARIEL|C10orf107	ciliary associated calcium binding coiled-coil 1	protein-coding
64550	chr14	24606371	24606530	+	0	NA	TTS (NM_001270781)	TTS (NM_001270781)	3235	NM_001270781	2999		NM_033423	ENSG00000100450	GZMH	CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2	granzyme H	protein-coding
162167	chr3	46984071	46984630	+	0	NA	intron (NM_015175, intron 1 of 53)	intron (NM_015175, intron 1 of 53)	-2340	NM_144716	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
174137	chr4	36228871	36229230	+	0	NA	exon (NM_015230, exon 2 of 33)	exon (NM_015230, exon 2 of 33)	14889	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
92038	chr17	7490171	7491450	+	0	NA	intron (NM_000937, intron 1 of 29)	intron (NM_000937, intron 1 of 29)	6444	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
35627	chr11	1829051	1829350	+	0	NA	Intergenic	Intergenic	-5227	NM_138567	90019		NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
214753	chr7	151063301	151063700	+	0	NA	intron (NM_001199694, intron 1 of 21)	intron (NM_001199694, intron 1 of 21)	858	NM_001199694	6522		NM_003040	ENSG00000164889	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3|OPTB9	solute carrier family 4 member 2	protein-coding
228011	chr9	95697971	95698130	+	0	NA	Intergenic	L1HS|LINE|L1	-177641	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
214904	chr7	151446971	151447130	+	0	NA	Intergenic	AluJo|SINE|Alu	-6237	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
216845	chr8	22601751	22602880	+	0	NA	TTS (NR_160769)	TTS (NR_160769)	-2442	NM_001363069	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
202012	chr6	152634701	152635300	+	0	NA	intron (NM_033071, intron 1 of 145)	intron (NM_033071, intron 1 of 145)	1851	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
224951	chr9	33041951	33042100	+	0	NA	3' UTR (NM_018225, exon 12 of 12)	3' UTR (NM_018225, exon 12 of 12)	16752	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
105629	chr18	810251	810730	+	0	NA	intron (NM_005433, intron 1 of 11)	intron (NM_005433, intron 1 of 11)	1752	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
6040	chr1	27119301	27119500	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	35725	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
97806	chr17	44778851	44780180	+	0	NA	intron (NM_001318933, intron 26 of 26)	intron (NM_001318933, intron 26 of 26)	20527	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
235627	chrX	48367801	48368030	+	0	NA	Intergenic	AluSz|SINE|Alu	-11212	NM_021014	10214		NM_021014	ENSG00000165584	SSX3	CT5.3	SSX family member 3	protein-coding
117440	chr19	19654021	19654280	+	0	NA	intron (NM_020410, intron 13 of 25)	intron (NM_020410, intron 13 of 25)	9526	NM_020410	57130		NM_020410	ENSG00000105726	ATP13A1	ATP13A|CGI-152	ATPase 13A1	protein-coding
216370	chr8	17695571	17696330	+	0	NA	intron (NR_156437, intron 6 of 13)	L1ME4b|LINE|L1	1787	NM_020749	57509		NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1	microtubule associated scaffold protein 1	protein-coding
189857	chr5	177131371	177132050	+	0	NA	Intergenic	Intergenic	-1369	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
168606	chr3	149339971	149340130	+	0	NA	Intergenic	Intergenic	-6414	NM_138786	116441		NM_138786	ENSG00000163762	TM4SF18	L6D	transmembrane 4 L six family member 18	protein-coding
131559	chr2	96776121	96776380	+	0	NA	intron (NM_020184, intron 1 of 6)	AluSc8|SINE|Alu	15348	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
34785	chr11	216501	216900	+	0	NA	exon (NM_012239, exon 7 of 7)	exon (NM_012239, exon 7 of 7)	7364	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
201557	chr6	149264171	149265150	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	-7109	NR_149096	105378049		NR_149096	ENSG00000225924	TAB2-AS1	-	TAB2 antisense RNA 1	ncRNA
68294	chr14	77178351	77178450	+	0	NA	Intergenic	Intergenic	-3398	NM_020431	57156		NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|SPG87|hsCSC1	transmembrane protein 63C	protein-coding
15597	chr1	150589571	150589930	+	0	NA	Intergenic	AluJo|SINE|Alu	-10012	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
155878	chr22	39503751	39504050	+	0	NA	intron (NR_130789, intron 1 of 5)	MIR|SINE|MIR	1670	NR_130789	54471		NM_013298	ENSG00000100335	MIEF1	AltMIEF1|D3A|HSU79252|L0R8F8|MID51|MIEF1-MP|OPA14|SMCR7L|dJ1104E15.3	mitochondrial elongation factor 1	protein-coding
224601	chr9	20376251	20376350	+	0	NA	intron (NM_001286691, intron 5 of 10)	intron (NM_001286691, intron 5 of 10)	34938	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
214654	chr7	150867771	150867930	+	0	NA	Intergenic	Intergenic	15333	NM_001091	26		NM_001091	ENSG00000002726	AOC1	ABP|ABP1|DAO|DAO1|KAO|KDAO	amine oxidase copper containing 1	protein-coding
86129	chr16	57682121	57682580	+	0	NA	intron (NM_170776, intron 8 of 11)	intron (NM_170776, intron 8 of 11)	-12456	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
40197	chr11	62928721	62929180	+	0	NA	Intergenic	L2b|LINE|L2	-7587	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
16174	chr1	153783311	153784900	+	0	NA	Intergenic	L1MB7|LINE|L1	8698	NM_001317929	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
221081	chr8	117098851	117099150	+	0	NA	intron (NM_001172815, intron 2 of 10)	intron (NM_001172815, intron 2 of 10)	-35995	NM_001172814	169026		NM_173851	ENSG00000164756	SLC30A8	ZNT8|ZnT-8	solute carrier family 30 member 8	protein-coding
164016	chr3	53194601	53195350	+	0	NA	Intergenic	MIR|SINE|MIR	26272	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
168956	chr3	152378621	152379200	+	0	NA	intron (NM_001376837, intron 2 of 9)	AluJb|SINE|Alu	-37920	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
25335	chr10	6239151	6239930	+	0	NA	intron (NM_001363545, intron 14 of 14)	intron (NM_001363545, intron 14 of 14)	36608	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
227163	chr9	86611471	86611730	+	0	NA	Intergenic	L1PA2|LINE|L1	-257190	NM_001330718	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
142592	chr20	5559251	5559700	+	0	NA	intron (NM_019593, intron 17 of 19)	AluJb|SINE|Alu	-49473	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
167069	chr3	126989771	126990400	+	0	NA	intron (NM_032242, intron 1 of 30)	intron (NM_032242, intron 1 of 30)	1491	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
90672	chr17	1712251	1712750	+	0	NA	non-coding (NR_028503, exon 3 of 3)	non-coding (NR_028503, exon 3 of 3)	1487	NR_029494	407004		NR_029494	ENSG00000283824	MIR22	MIRN22|hsa-mir-22|miR-22	microRNA 22	ncRNA
160235	chr3	23960151	23960600	+	0	NA	intron (NR_110524, intron 4 of 8)	AluSz|SINE|Alu	-13813	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
113803	chr19	10574401	10574930	+	0	NA	intron (NM_001300887, intron 10 of 11)	intron (NM_001300887, intron 10 of 11)	-5686	NM_079421	1032		NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
220609	chr8	100920551	100920650	+	0	NA	3' UTR (NM_001135701, exon 6 of 6)	3' UTR (NM_001135701, exon 6 of 6)	29971	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
59146	chr13	21478721	21479530	+	0	NA	Intergenic	Intergenic	-19755	NM_001286638	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
40399	chr11	64038351	64038930	+	0	NA	intron (NM_001384466, intron 1 of 2)	intron (NM_001384466, intron 1 of 2)	1958	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
236275	chrX	66036001	66036200	+	0	NA	intron (NM_001184830, intron 1 of 6)	intron (NM_001184830, intron 1 of 6)	3980	NM_007268	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
146059	chr20	47439001	47439230	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-26971	NR_146496	102723442		NR_146494		LINC01754	-	long intergenic non-protein coding RNA 1754	ncRNA
150746	chr21	43767851	43768150	+	0	NA	Intergenic	Intergenic	8308	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
86327	chr16	66344601	66344880	+	0	NA	Intergenic	Intergenic	-21951	NM_001795	1003		NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
237960	chrX	133402271	133402430	+	0	NA	intron (NM_001448, intron 1 of 8)	intron (NM_001448, intron 1 of 8)	13139	NM_001448	2239		NM_001448	ENSG00000076716	GPC4	K-glypican|KPTS	glypican 4	protein-coding
189351	chr5	172274951	172275400	+	0	NA	intron (NM_152277, intron 1 of 2)	THE1C|LTR|ERVL-MaLR	8589	NM_152277	92181		NM_152277	ENSG00000168246	UBTD2	DCUBP	ubiquitin domain containing 2	protein-coding
14116	chr1	120934621	120935080	+	0	NA	intron (NR_109754, intron 1 of 2)	MLT1A|LTR|ERVL-MaLR	-7750	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
103215	chr17	77482471	77483480	+	0	NA	intron (NM_001293697, intron 2 of 9)	MIRb|SINE|MIR	7340	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
121830	chr19	48107301	48107780	+	0	NA	intron (NM_003706, intron 1 of 16)	LTR13|LTR|ERVK	3277	NM_003706	8605		NM_003706	ENSG00000105499	PLA2G4C	CPLA2-gamma	phospholipase A2 group IVC	protein-coding
75934	chr15	70244051	70244350	+	0	NA	Intergenic	MIR|SINE|MIR	-146283	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
157462	chr22	45270401	45270830	+	0	NA	Intergenic	Intergenic	-14334	NM_006953	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
147792	chr20	62625401	62625700	+	0	NA	Intergenic	Intergenic	-16953	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
127001	chr2	36804251	36804550	+	0	NA	intron (NM_053276, intron 13 of 15)	intron (NM_053276, intron 13 of 15)	107693	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
117054	chr19	18960501	18961080	+	0	NA	Intergenic	AluSx|SINE|Alu	-19573	NM_004838	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
179008	chr4	163681221	163681580	+	0	NA	intron (NM_001166373, intron 4 of 7)	MER91C|DNA|hAT-Tip100	-67866	NM_017923	55016		NM_017923	ENSG00000145416	MARCHF1	MARCH-I|MARCH1|RNF171	membrane associated ring-CH-type finger 1	protein-coding
220959	chr8	109642601	109643080	+	0	NA	exon (NM_001099751, exon 3 of 8)	exon (NM_001099751, exon 3 of 8)	350	NM_001099756	55638		NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding
167110	chr3	127628501	127630580	+	0	NA	intron (NM_015720, intron 1 of 7)	CpG	355	NM_015720	50512		NM_015720	ENSG00000114631	PODXL2	EG|PODLX2	podocalyxin like 2	protein-coding
127334	chr2	39102001	39102450	+	0	NA	intron (NM_001382394, intron 1 of 22)	AluSg|SINE|Alu	18826	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
6394	chr1	27935001	27935830	+	0	NA	intron (NM_001304579, intron 1 of 7)	intron (NM_001304579, intron 1 of 7)	415	NM_001304579	27293		NM_014474	ENSG00000130768	SMPDL3B	ASML3B	sphingomyelin phosphodiesterase acid like 3B	protein-coding
192089	chr6	16685071	16685520	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	74889	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
173855	chr4	22634701	22635100	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-58014	NM_020973	57733		NM_020973	ENSG00000249948	GBA3	CBG|CBGL1|GLUC|KLRP	glucosylceramidase beta 3 (gene/pseudogene)	protein-coding
118128	chr19	34851501	34851700	+	0	NA	Intergenic	Intergenic	-18731	NR_033982	400685		NR_033982	ENSG00000267767	LINC01801	-	long intergenic non-protein coding RNA 1801	ncRNA
36686	chr11	8685071	8685230	+	0	NA	promoter-TSS (NR_002977)	promoter-TSS (NR_002977)	-289	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
57688	chr12	122843451	122844130	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	8333	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
20676	chr1	200412021	200412580	+	0	NA	Intergenic	MER21B|LTR|ERVL	-2264	NM_001281293	23528		NM_012482	ENSG00000162702	ZNF281	GZP1|ZBP-99|ZBP99|ZNP-99	zinc finger protein 281	protein-coding
217257	chr8	27312951	27313130	+	0	NA	intron (NM_173174, intron 2 of 35)	THE1D|LTR|ERVL-MaLR	1562	NM_173174	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
136451	chr2	176854321	176854580	+	0	NA	Intergenic	Intergenic	216696	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
142747	chr20	10437971	10438530	+	0	NA	intron (NM_001009608, intron 1 of 7)	L1MA10|LINE|L1	2945	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
98704	chr17	47943701	47944130	+	0	NA	intron (NM_018129, intron 2 of 6)	intron (NM_018129, intron 2 of 6)	2344	NM_018129	55163		NM_018129	ENSG00000108439	PNPO	HEL-S-302|PDXPO	pyridoxamine 5'-phosphate oxidase	protein-coding
8809	chr1	42942471	42942700	+	0	NA	intron (NM_006516, intron 2 of 9)	intron (NM_006516, intron 2 of 9)	16283	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
42985	chr11	73900851	73900950	+	0	NA	intron (NM_001267805, intron 7 of 12)	AluYa5|SINE|Alu	12119	NM_001363556	80227		NM_025155	ENSG00000175575	PAAF1	PAAF|Rpn14|WDR71	proteasomal ATPase associated factor 1	protein-coding
26547	chr10	21571051	21571350	+	0	NA	intron (NR_136736, intron 4 of 25)	L1MEc|LINE|L1	36968	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
151544	chr21	46536301	46536500	+	0	NA	intron (NM_206891, intron 13 of 19)	intron (NM_206891, intron 13 of 19)	68682	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
165268	chr3	75432901	75433580	+	0	NA	intron (NR_024241, intron 1 of 7)	intron (NR_024241, intron 1 of 7)	1875	NR_024241	692099		NR_024241	ENSG00000291223	FAM86DP	FAM86D	family with sequence similarity 86 member D, pseudogene	pseudo
238102	chrX	136608321	136608950	+	0	NA	Intergenic	Intergenic	-30908	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
79506	chr16	793871	794630	+	0	NA	intron (NM_022092, intron 15 of 21)	intron (NM_022092, intron 15 of 21)	5630	NM_022092	63922		NM_022092	ENSG00000127586	CHTF18	C16orf41|C321D2.2|C321D2.3|C321D2.4|CHL12|Ctf18|RUVBL	chromosome transmission fidelity factor 18	protein-coding
175190	chr4	56469721	56470250	+	0	NA	intron (NR_151856, intron 2 of 19)	(T)n|Simple_repeat|Simple_repeat	2368	NR_151856	6731		NM_006947	ENSG00000174780	SRP72	BMFF|BMFS1|HEL103	signal recognition particle 72	protein-coding
110332	chr19	1868071	1868700	+	0	NA	Intergenic	L1MD3|LINE|L1	-4806	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
89079	chr16	88467051	88467150	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	-1818	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
49807	chr12	31969801	31970000	+	0	NA	intron (NM_018169, intron 2 of 5)	intron (NM_018169, intron 2 of 5)	10485	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
19024	chr1	169667151	169669100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-38001	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
6863	chr1	31151371	31151730	+	0	NA	Intergenic	AluJr4|SINE|Alu	-85833	NM_014676	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
184571	chr5	102801001	102801800	+	0	NA	intron (NM_001364588, intron 1 of 24)	intron (NM_001364588, intron 1 of 24)	-6798	NM_001364582	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
173961	chr4	25951301	25951900	+	0	NA	Intergenic	Intergenic	37408	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
197187	chr6	63577451	63577880	+	0	NA	non-coding (NR_169594, exon 3 of 7)	non-coding (NR_169594, exon 3 of 7)	5185	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
127280	chr2	38727251	38727650	+	0	NA	intron (NM_138801, intron 4 of 6)	AluSx4|SINE|Alu	23911	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
157575	chr22	45975721	45975980	+	0	NA	intron (NM_058238, intron 1 of 3)	CpG	1312	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
120052	chr19	42028301	42028980	+	0	NA	intron (NM_001301030, intron 11 of 18)	LTR50|LTR|ERVL	-34410	NM_152296	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
219177	chr8	66538901	66539500	+	0	NA	Intergenic	Intergenic	45634	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
178836	chr4	153640851	153640950	+	0	NA	intron (NR_134873, intron 1 of 2)	intron (NR_134873, intron 1 of 2)	732	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
238474	chrX	153389501	153389700	+	0	NA	Intergenic	Intergenic	11096	NM_001351294	649238		NM_001351293	ENSG00000214897	PNMA6E	-	PNMA family member 6E	protein-coding
25213	chr10	5761771	5762130	+	0	NA	intron (NM_017782, intron 19 of 20)	AluSz|SINE|Alu	51484	NM_001494	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
154771	chr22	36524551	36524850	+	0	NA	exon (NM_003753, exon 4 of 15)	exon (NM_003753, exon 4 of 15)	4466	NM_003753	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
203385	chr6	170552471	170553400	+	0	NA	intron (NM_002793, intron 1 of 5)	intron (NM_002793, intron 1 of 5)	372	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
37518	chr11	18590671	18591180	+	0	NA	Intergenic	L2a|LINE|L2	-2191	NM_001261382	55293		NM_018314	ENSG00000151116	UEVLD	ATTP|UEV3	UEV and lactate/malate dehyrogenase domains	protein-coding
101473	chr17	67476351	67476630	+	0	NA	intron (NM_181671, intron 1 of 9)	MIR3|SINE|MIR	-4905	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
220731	chr8	102105601	102105800	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	18634	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
51822	chr12	53445901	53446430	+	0	NA	3' UTR (NM_018457, exon 4 of 4)	3' UTR (NM_018457, exon 4 of 4)	4431	NM_018457	54458		NM_018457	ENSG00000205352	PRR13	TXR1	proline rich 13	protein-coding
178511	chr4	150827971	150829230	+	0	NA	exon (NM_001364905, exon 30 of 57)	exon (NM_001364905, exon 30 of 57)	186667	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
58765	chr12	132690221	132690480	+	0	NA	exon (NM_018663, exon 2 of 5)	exon (NM_018663, exon 2 of 5)	2763	NM_018663	5827		NM_018663	ENSG00000176894	PXMP2	MPV17L3|PMP22	peroxisomal membrane protein 2	protein-coding
165296	chr3	81056851	81057150	+	0	NA	intron (NR_132411, intron 1 of 1)	L1PA2|LINE|L1	63132	NR_132411	728290		NR_132411		LINC02027	-	long intergenic non-protein coding RNA 2027	ncRNA
109448	chr19	741251	742150	+	0	NA	intron (NM_002579, intron 8 of 8)	intron (NM_002579, intron 8 of 8)	-9412	NM_173481	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
51993	chr12	53962971	53963330	+	0	NA	non-coding (NR_047518, exon 4 of 4)	non-coding (NR_047518, exon 4 of 4)	5606	NR_003716	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
187775	chr5	145946321	145946980	+	0	NA	intron (NM_152550, intron 2 of 9)	intron (NM_152550, intron 2 of 9)	10072	NM_152550	153769		NM_152550	ENSG00000156463	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
32729	chr10	104292451	104292750	+	0	NA	intron (NM_183239, intron 5 of 6)	AluJb|SINE|Alu	17434	NM_001191015	119391		NM_183239	ENSG00000065621	GSTO2	GSTO 2-2|bA127L20.1	glutathione S-transferase omega 2	protein-coding
90225	chr17	577121	577380	+	0	NA	intron (NM_018289, intron 12 of 17)	intron (NM_018289, intron 12 of 17)	-131310	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
22575	chr1	222712001	222712900	+	0	NA	promoter-TSS (NR_109927)	promoter-TSS (NR_109927)	41	NM_022831	64853		NM_022831	ENSG00000186063	AIDA	C1orf80	axin interactor, dorsalization associated	protein-coding
237648	chrX	124239301	124240350	+	0	NA	Intergenic	Intergenic	-92835	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
29117	chr10	68347101	68347500	+	0	NA	intron (NM_001330103, intron 16 of 17)	AluSx|SINE|Alu	-14372	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
61458	chr13	52128771	52129350	+	0	NA	promoter-TSS (NM_199289)	promoter-TSS (NM_199289)	13	NM_199289	341676		NM_199289	ENSG00000197168	NEK5	-	NIMA related kinase 5	protein-coding
37382	chr11	16974751	16974850	+	0	NA	intron (NM_175058, intron 3 of 22)	intron (NM_175058, intron 3 of 22)	39614	NM_001329630	144100		NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding
58790	chr12	132763501	132764130	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-1983	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
163502	chr3	51384451	51386250	+	0	NA	promoter-TSS (NM_006010)	promoter-TSS (NM_006010)	59	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
181744	chr5	50707651	50708100	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	40461	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
144770	chr20	36621301	36621500	+	0	NA	intron (NM_175077, intron 5 of 7)	intron (NM_175077, intron 5 of 7)	15621	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
171581	chr3	197005571	197005930	+	0	NA	intron (NM_005929, intron 14 of 15)	L2-3_Crp|LINE|L2	2844	NR_038285	100507057		NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1|PLANE	MELTF antisense RNA 1	ncRNA
97281	chr17	43031321	43031600	+	0	NA	3' UTR (NM_005440, exon 5 of 5)	3' UTR (NM_005440, exon 5 of 5)	6229	NM_005440	8153		NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
222861	chr8	142700351	142700650	+	0	NA	5' UTR (NM_017527, exon 1 of 3)	5' UTR (NM_017527, exon 1 of 3)	389	NM_017527	54742		NM_017527	ENSG00000160886	LY6K	CT97|HSJ001348|URLC10|ly-6K	lymphocyte antigen 6 family member K	protein-coding
208862	chr7	73721621	73723080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2681	NM_001165903	6804		NM_004603	ENSG00000106089	STX1A	HPC-1|P35-1|STX1|SYN1A	syntaxin 1A	protein-coding
82443	chr16	16333351	16333850	+	0	NA	intron (NR_036447, intron 24 of 30)	intron (NR_036447, intron 24 of 30)	-2330	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
221814	chr8	128002701	128003100	+	0	NA	intron (NR_003367, intron 5 of 8)	(CTTC)n|Simple_repeat|Simple_repeat	-5998	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
162239	chr3	47160571	47160930	+	0	NA	intron (NR_146158, intron 1 of 21)	intron (NR_146158, intron 1 of 21)	3363	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
177216	chr4	108482751	108483730	+	0	NA	Intergenic	Intergenic	-73993	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
155907	chr22	39556471	39556630	+	0	NA	Intergenic	Intergenic	-14203	NM_021096	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
174269	chr4	38154651	38154950	+	0	NA	Intergenic	Intergenic	34846	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
222605	chr8	141030771	141030930	+	0	NA	Intergenic	Intergenic	-28771	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
4193	chr1	19439721	19440580	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	44145	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
199893	chr6	127846221	127846480	+	0	NA	intron (NM_001318531, intron 2 of 6).2	L1M4|LINE|L1	8838	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
146353	chr20	49253751	49254650	+	0	NA	intron (NM_021035, intron 10 of 13)	AluSx1|SINE|Alu	23857	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
2384	chr1	9425371	9425530	+	0	NA	non-coding (NR_104623, exon 2 of 2)	non-coding (NR_104623, exon 2 of 2)	3466	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
185426	chr5	131138171	131138530	+	0	NA	Intergenic	L1PA4|LINE|L1	26906	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
12852	chr1	110079521	110079780	+	0	NA	Intergenic	Intergenic	-3038	NR_126382	104355139		NR_126382	ENSG00000258673	LINC01397	-	long intergenic non-protein coding RNA 1397	ncRNA
13332	chr1	113792501	113793700	+	0	NA	intron (NM_018364, intron 2 of 6)	intron (NM_018364, intron 2 of 6)	19376	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
140448	chr2	233155251	233155550	+	0	NA	intron (NM_001017915, intron 9 of 26).2	AluSz|SINE|Alu	95058	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
91175	chr17	3827121	3827530	+	0	NA	intron (NM_001114118, intron 4 of 12)	intron (NM_001114118, intron 4 of 12)	18921	NM_001114118	55421		NM_018553	ENSG00000074356	NCBP3	C17orf85|ELG|HSA277841	nuclear cap binding subunit 3	protein-coding
65794	chr14	54642951	54643230	+	0	NA	intron (NM_015589, intron 2 of 12)	intron (NM_015589, intron 2 of 12)	75478	NM_001161576	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
107856	chr18	54806751	54806850	+	0	NA	intron (NM_001375327, intron 2 of 6)	intron (NM_001375327, intron 2 of 6)	-21677	NM_004163	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
155657	chr22	39013871	39015900	+	0	NA	intron (NM_014508, intron 1 of 3)	intron (NM_014508, intron 1 of 3)	628	NM_014508	27350		NM_014508	ENSG00000244509	APOBEC3C	A3C|APOBEC1L|ARDC2|ARDC4|ARP5|PBI|bK150C2.3	apolipoprotein B mRNA editing enzyme catalytic subunit 3C	protein-coding
192383	chr6	24717501	24717800	+	0	NA	intron (NM_030939, intron 1 of 4)	intron (NM_030939, intron 1 of 4)	1504	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
166921	chr3	125050971	125051130	+	0	NA	intron (NM_020733, intron 1 of 16)	intron (NM_020733, intron 1 of 16)	4947	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
181643	chr5	49666201	49666690	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	774843	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
222955	chr8	143168751	143168850	+	0	NA	Intergenic	Intergenic	-8146	NM_001130478	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
227310	chr9	89426151	89427100	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	53265	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
87530	chr16	71901501	71901700	+	0	NA	intron (NM_001270979, intron 1 of 5)	intron (NM_001270979, intron 1 of 5)	6069	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
210933	chr7	101240701	101241300	+	0	NA	intron (NM_016068, intron 2 of 4)	intron (NM_016068, intron 2 of 4)	-2180	NM_001185080	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
228884	chr9	112715051	112715700	+	0	NA	intron (NM_001329590, intron 1 of 4)	Tigger3|DNA|TcMar-Tigger	2742	NR_138056	58493		NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
96969	chr17	42249631	42250830	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	26161	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
178497	chr4	150573771	150573930	+	0	NA	intron (NM_001367550, intron 40 of 56)	intron (NM_001367550, intron 40 of 56)	-5239	NR_149035	729558		NR_149035	ENSG00000249690	LOC729558	-	uncharacterized LOC729558	ncRNA
56516	chr12	116557771	116557930	+	0	NA	Intergenic	AluSz|SINE|Alu	-1531	NM_001085481	643246		NM_001085481	ENSG00000258102	MAP1LC3B2	ATG8G	microtubule associated protein 1 light chain 3 beta 2	protein-coding
189678	chr5	176396871	176397500	+	0	NA	intron (NM_007097, intron 4 of 5)	L2b|LINE|L2	-8258	NM_001256539	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
8	chr1	18901	19200	+	0	NA	intron (NR_024540, intron 2 of 10)	intron (NR_024540, intron 2 of 10)	-1614	NR_107063	102465910		NR_107063	ENSG00000275449	MIR6859-3	hsa-mir-6859-3	microRNA 6859-3	ncRNA
145528	chr20	44115571	44115930	+	0	NA	exon (NM_020433, exon 4 of 6)	exon (NM_020433, exon 4 of 6)	71438	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
180546	chr5	14655171	14655430	+	0	NA	Intergenic	Charlie2b|DNA|hAT-Charlie	-2918	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
190085	chr5	177798101	177798780	+	0	NA	Intergenic	Intergenic	11067	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
88218	chr16	81843721	81844180	+	0	NA	intron (NM_002661, intron 2 of 32)	(TTTCTT)n|Simple_repeat|Simple_repeat	64659	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
220812	chr8	102788901	102789450	+	0	NA	Intergenic	Intergenic	-17647	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
60444	chr13	41008421	41009380	+	0	NA	intron (NM_001370329, intron 1 of 9)	Charlie1a|DNA|hAT-Charlie	10416	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
132634	chr2	108631301	108631700	+	0	NA	intron (NM_001371500, intron 1 of 2)	intron (NM_001371500, intron 1 of 2)	10249	NM_001371500	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
91416	chr17	4708051	4709100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2057	NM_001330064	409		NM_004313	ENSG00000141480	ARRB2	ARB2|ARR2|BARR2	arrestin beta 2	protein-coding
31129	chr10	89416501	89416930	+	0	NA	intron (NM_012420, intron 1 of 1)	intron (NM_012420, intron 1 of 1)	2147	NM_012420	24138		NM_012420	ENSG00000152778	IFIT5	ISG58|P58|RI58	interferon induced protein with tetratricopeptide repeats 5	protein-coding
35121	chr11	691071	691500	+	0	NA	intron (NM_001367390, intron 2 of 11)	intron (NM_001367390, intron 2 of 11)	3937	NM_021008	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
26938	chr10	26486521	26488100	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	48969	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
218234	chr8	42049501	42050000	+	0	NA	intron (NM_001305878, intron 1 of 13)	intron (NM_001305878, intron 1 of 13)	-2000	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
94009	chr17	25389901	25390050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1699266	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
219924	chr8	86370871	86371230	+	0	NA	intron (NM_007013, intron 2 of 24)	AluSx1|SINE|Alu	28503	NM_007013	11059		NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
35828	chr11	2269901	2270400	+	0	NA	exon (NM_005170, exon 1 of 2)	exon (NM_005170, exon 1 of 2)	438	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
33384	chr10	117545471	117545630	+	0	NA	promoter-TSS (NR_002791)	promoter-TSS (NR_002791)	-482	NR_002791	196047		NR_002791	ENSG00000229847	EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
75770	chr15	68693251	68693350	+	0	NA	intron (NM_001190456, intron 2 of 11)	intron (NM_001190456, intron 2 of 11)	51797	NM_001324015	10391		NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
119588	chr19	40713771	40718350	+	0	NA	promoter-TSS (NM_001142555)	promoter-TSS (NM_001142555)	826	NM_024876	79934		NM_024876	ENSG00000123815	COQ8B	ADCK4|NPHS9	coenzyme Q8B	protein-coding
186101	chr5	134121521	134121850	+	0	NA	intron (NR_033449, intron 1 of 7)	intron (NR_033449, intron 1 of 7)	-1933	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
26289	chr10	14938951	14939350	+	0	NA	intron (NR_146960, intron 4 of 13)	MLT1A0|LTR|ERVL-MaLR	14946	NR_146961	64421		NM_022487	ENSG00000152457	DCLRE1C	A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C	DNA cross-link repair 1C	protein-coding
163706	chr3	52277271	52279400	+	0	NA	exon (NM_025222, exon 1 of 9)	exon (NM_025222, exon 1 of 9)	314	NM_025222	80335		NM_025222	ENSG00000164091	WDR82	MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A	WD repeat domain 82	protein-coding
229621	chr9	124015371	124016080	+	0	NA	intron (NM_004789, intron 3 of 4)	CpG	3957	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
17334	chr1	156477551	156477880	+	0	NA	intron (NM_001271629, intron 6 of 10)	intron (NM_001271629, intron 6 of 10)	12972	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
184419	chr5	98923971	98925080	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-4037	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
21412	chr1	205297071	205297230	+	0	NA	Intergenic	AluJb|SINE|Alu	24595	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
34800	chr11	266721	268450	+	0	NA	Intergenic	Intergenic	-10822	NM_001276700	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
156803	chr22	41921151	41921250	+	0	NA	TTS (NM_052945)	TTS (NM_052945)	2097	NR_039760	100616259		NR_039760	ENSG00000283829	MIR378I	-	microRNA 378i	ncRNA
162148	chr3	46963771	46963930	+	0	NA	intron (NM_144716, intron 2 of 7)	SVA_D|Retroposon|SVA	12651	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
204363	chr7	2914101	2914300	+	0	NA	intron (NM_032415, intron 21 of 24)	intron (NM_032415, intron 21 of 24)	-69892	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
187466	chr5	142133071	142133230	+	0	NA	intron (NM_030571, intron 3 of 7)	intron (NM_030571, intron 3 of 7)	24371	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
30279	chr10	75187551	75188550	+	0	NA	Intergenic	Intergenic	-22104	NM_001324087	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
92775	chr17	15683751	15684830	+	0	NA	promoter-TSS (NM_001348125)	promoter-TSS (NM_001348125)	21	NM_001348119	10626		NM_006470	ENSG00000221926	TRIM16	EBBP	tripartite motif containing 16	protein-coding
217814	chr8	35533551	35533650	+	0	NA	intron (NM_080872, intron 1 of 16)	L1PA2|LINE|L1	-10792	NM_001322818	137970		NM_080872	ENSG00000156687	UNC5D	PRO34692|Unc5h4	unc-5 netrin receptor D	protein-coding
90909	chr17	2511221	2512650	+	0	NA	promoter-TSS (NM_024086)	promoter-TSS (NM_024086)	-47	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
42059	chr11	67474601	67474800	+	0	NA	Intergenic	MER66-int|LTR|ERV1	-5449	NM_001078650	80194		NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding
40691	chr11	64773701	64773900	+	0	NA	intron (NM_201995, intron 2 of 13)	intron (NM_201995, intron 2 of 13)	3961	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
218380	chr8	43241571	43241930	+	0	NA	Intergenic	SAR|Satellite|Satellite	-50692	NM_001002920	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
132733	chr2	109238521	109238880	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	74925	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	ncRNA
92614	chr17	10046401	10047200	+	0	NA	intron (NM_201433, intron 1 of 13)	GA-rich|Low_complexity|Low_complexity	-10143	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
106295	chr18	12839171	12841450	+	0	NA	intron (NM_080422, intron 2 of 9)	intron (NM_080422, intron 2 of 9)	652	NM_001308287	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
38230	chr11	36449851	36450530	+	0	NA	intron (NM_001160169, intron 6 of 6)	intron (NM_001160169, intron 6 of 6)	49193	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
34461	chr10	132443621	132445600	+	0	NA	promoter-TSS (NR_149317)	promoter-TSS (NR_149317)	-579	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
128357	chr2	54966221	54966900	+	0	NA	intron (NM_001039753, intron 37 of 40)	intron (NM_001039753, intron 37 of 40)	43712	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133557	chr2	121080171	121080400	+	0	NA	Intergenic	(GGAGTCT)n|Simple_repeat|Simple_repeat	204917	NM_014553	29842		NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
203559	chr7	895101	896180	+	0	NA	3' UTR (NM_015949, exon 9 of 9)	3' UTR (NM_015949, exon 9 of 9)	19086	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
56712	chr12	120098971	120099450	+	0	NA	intron (NM_006861, intron 3 of 5)	intron (NM_006861, intron 3 of 5)	17543	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
193438	chr6	30483471	30484180	+	0	NA	Intergenic	MER54B|LTR|ERVL	-5684	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
147568	chr20	60272751	60273450	+	0	NA	intron (NR_046099, intron 3 of 4)	MIRc|SINE|MIR	-35374	NR_030376	693231		NR_030376	ENSG00000207802	MIR646	MIRN646|hsa-mir-646	microRNA 646	ncRNA
76182	chr15	73240901	73241230	+	0	NA	intron (NM_001172623, intron 8 of 27)	intron (NM_001172623, intron 8 of 27)	-58845	NR_162148	113219462		NR_162148		MIR12135	-	microRNA 12135	ncRNA
39404	chr11	60834221	60834880	+	0	NA	Intergenic	Intergenic	-7563	NM_024098	79080		NM_024098	ENSG00000110104	CCDC86	Cgr1	coiled-coil domain containing 86	protein-coding
68467	chr14	87423751	87423850	+	0	NA	Intergenic	L1PA3|LINE|L1	231494	NR_146551	105370611		NR_146551	ENSG00000258770	LINC02330	-	long intergenic non-protein coding RNA 2330	ncRNA
209208	chr7	75433021	75433830	+	0	NA	intron (NM_001099415, intron 7 of 14)	AluY|SINE|Alu	23103	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
27961	chr10	42192501	42192700	+	0	NA	Intergenic	Intergenic	175445	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
130863	chr2	87402571	87402830	+	0	NA	Intergenic	AluSx3|SINE|Alu	-52727	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
118037	chr19	34230801	34231230	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-23539	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
211310	chr7	103351251	103351580	+	0	NA	intron (NM_002803, intron 1 of 11)	MER68|LTR|ERVL	3772	NM_002803	5701		NM_002803	ENSG00000161057	PSMC2	MSS1|Nbla10058|RPT1|S7	proteasome 26S subunit, ATPase 2	protein-coding
54436	chr12	91685901	91686250	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	455638	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
43535	chr11	82864271	82864430	+	0	NA	intron (NM_005040, intron 1 of 8)	intron (NM_005040, intron 1 of 8)	36080	NM_005040	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
180742	chr5	31948771	31948930	+	0	NA	intron (NM_178140, intron 2 of 24)	AluSx1|SINE|Alu	-12691	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
72407	chr15	31399751	31400480	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	73280	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
96747	chr17	41695601	41696630	+	0	NA	Intergenic	Intergenic	7230	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
61545	chr13	60409051	60409350	+	0	NA	intron (NM_001146070, intron 1 of 13)	THE1A-int|LTR|ERVL-MaLR	11980	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
187498	chr5	142324471	142325580	+	0	NA	promoter-TSS (NM_001127496)	promoter-TSS (NM_001127496)	-4	NM_030964	81848		NM_030964	ENSG00000187678	SPRY4	HH17	sprouty RTK signaling antagonist 4	protein-coding
216435	chr8	19460751	19460850	+	0	NA	intron (NR_148900, intron 3 of 9)	intron (NR_148900, intron 3 of 9)	141745	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
16921	chr1	155895601	155896000	+	0	NA	Intergenic	AluSg7|SINE|Alu	15118	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
235920	chrX	53090201	53090850	+	0	NA	Intergenic	MIR3|SINE|MIR	-3632	NR_145978	102723508		NM_001397448	ENSG00000232593	KANTR	LINC01155|Spasm	KANTR integral membrane protein	protein-coding
29040	chr10	67735151	67735650	+	0	NA	Intergenic	L1ME4c|LINE|L1	-39205	NM_013266	29119		NM_013266	ENSG00000183230	CTNNA3	ARVD13|VR22	catenin alpha 3	protein-coding
117830	chr19	30784971	30785130	+	0	NA	Intergenic	Intergenic	-382460	NR_147209	107985312		NR_147209	ENSG00000267777	LINC01791	-	long intergenic non-protein coding RNA 1791	ncRNA
222348	chr8	133551701	133551900	+	0	NA	intron (NM_173344, intron 1 of 9)	MIR|SINE|MIR	20087	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
150542	chr21	43045201	43045950	+	0	NA	Intergenic	Intergenic	22829	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
67861	chr14	74240751	74241500	+	0	NA	intron (NM_182894, intron 1 of 4)	CpG	1676	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
134067	chr2	131503351	131503650	+	0	NA	intron (NR_026922, intron 8 of 17)	AluSx1|SINE|Alu	10687	NR_026922	150776		NR_026922	ENSG00000293311	SMPD4BP	-	sphingomyelin phosphodiesterase 4B, pseudogene	pseudo
124984	chr2	9207601	9208200	+	0	NA	intron (NM_001135191, intron 1 of 26)	intron (NM_001135191, intron 1 of 26)	1088	NM_003887	8853		NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
204069	chr7	2037201	2038480	+	0	NA	intron (NM_001304524, intron 10 of 16)	Tigger1|DNA|TcMar-Tigger	51212	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
185315	chr5	126779921	126780900	+	0	NA	intron (NR_134488, intron 1 of 11)	Kanga1c|DNA|TcMar-Tc2	3274	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
207016	chr7	38368001	38368980	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	26913	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
28504	chr10	50260701	50261580	+	0	NA	Intergenic	Intergenic	-9624	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
189800	chr5	176825971	176826150	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	15501	NM_133369	90249		NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
7417	chr1	32956271	32956430	+	0	NA	intron (NM_001127361, intron 1 of 8)	AluSx|SINE|Alu	8459	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
224528	chr9	19182621	19182880	+	0	NA	Intergenic	Intergenic	-47943	NM_001330640	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
111334	chr19	3636921	3637180	+	0	NA	3' UTR (NM_001300849, exon 17 of 17)	3' UTR (NM_001300849, exon 17 of 17)	-10235	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
102780	chr17	76304351	76304650	+	0	NA	non-coding (NR_130649, exon 3 of 19)	non-coding (NR_130649, exon 3 of 19)	3180	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
147596	chr20	62010771	62011550	+	0	NA	intron (NM_003185, intron 3 of 14)	intron (NM_003185, intron 3 of 14)	-53642	NR_130463	100422838		NR_130463	ENSG00000265306	MIR3195	-	microRNA 3195	ncRNA
79348	chr16	592721	593200	+	0	NA	intron (NM_001172664, intron 2 of 6)	intron (NM_001172664, intron 2 of 6)	2883	NM_001172665	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
100103	chr17	58324151	58324880	+	0	NA	promoter-TSS (NR_038410)	promoter-TSS (NR_038410)	-935	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
126826	chr2	30697251	30697500	+	0	NA	Intergenic	LTR13|LTR|ERVK	110071	NM_144575	92291		NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
67400	chr14	69792621	69793780	+	0	NA	intron (NM_003049, intron 1 of 4)	intron (NM_003049, intron 1 of 4)	4041	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
114681	chr19	13099201	13101600	+	0	NA	intron (NM_005583, intron 3 of 3)	intron (NM_005583, intron 3 of 3)	2458	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
31097	chr10	89255501	89255900	+	0	NA	Intergenic	L2a|LINE|L2	-3661	NM_001288979	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
111001	chr19	3042771	3043300	+	0	NA	intron (NM_001144761, intron 2 of 19)	FLAM_C|SINE|Alu	4600	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
121054	chr19	45857121	45857480	+	0	NA	intron (NM_004819, intron 1 of 26)	AluY|SINE|Alu	5847	NM_004819	8189		NM_004819	ENSG00000125755	SYMPK	Pta1|SPK|SYM	symplekin scaffold protein	protein-coding
9524	chr1	51444801	51445000	+	0	NA	exon (NM_001981, exon 11 of 25)	exon (NM_001981, exon 11 of 25)	-22805	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
201500	chr6	149039221	149039480	+	0	NA	intron (NM_005715, intron 7 of 7)	AluSp|SINE|Alu	-6689	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
119949	chr19	41874351	41874450	+	0	NA	Intergenic	AluSz|SINE|Alu	-2879	NM_021601	973		NM_001783	ENSG00000105369	CD79A	IGA|IGAlpha|MB-1|MB1	CD79a molecule	protein-coding
155422	chr22	38415751	38416100	+	0	NA	Intergenic	Intergenic	-16999	NR_002821	400927		NM_001034843		TPTEP2	Z98749.2	TPTE pseudogene 2	pseudo
178479	chr4	148441821	148443900	+	0	NA	promoter-TSS (NM_000901)	promoter-TSS (NM_000901)	-446	NR_148974	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
67168	chr14	68794101	68795000	+	0	NA	promoter-TSS (NM_001244698)	promoter-TSS (NM_001244698)	-636	NM_001244698	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
231493	chr9	131390051	131390850	+	0	NA	intron (NM_001384822, intron 1 of 30)	MIRb|SINE|MIR	-3636	NM_001384821	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
78750	chr15	98904571	98904730	+	0	NA	intron (NM_000875, intron 5 of 20)	intron (NM_000875, intron 5 of 20)	101006	NM_001102612	145814		NM_001102612	ENSG00000183571	PGPEP1L	-	pyroglutamyl-peptidase I like	protein-coding
104962	chr17	81964501	81964900	+	0	NA	Intergenic	L1MB5|LINE|L1	-3513	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
167228	chr3	128470071	128470230	+	0	NA	intron (NR_037890, intron 2 of 2)	intron (NR_037890, intron 2 of 2)	-2902	NM_153330	165721		NM_153330	ENSG00000179407	DNAJB8	CT156|DJ6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding
12918	chr1	110639051	110639350	+	0	NA	Intergenic	MIR|SINE|MIR	-7760	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
118210	chr19	35151871	35152230	+	0	NA	intron (NM_022006, intron 5 of 5)	AluSx|SINE|Alu	-2685	NM_001320912	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
158290	chr22	50361021	50362130	+	0	NA	intron (NM_001351641, intron 1 of 23)	intron (NM_001351641, intron 1 of 23)	18248	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
14475	chr1	144517251	144517850	+	0	NA	Intergenic	Intergenic	34393	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
219199	chr8	66638601	66638800	+	0	NA	intron (NM_025054, intron 2 of 2)	AluY|SINE|Alu	-25482	NM_001080416	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
108494	chr18	72866971	72867150	+	0	NA	non-coding (NR_148695, exon 1 of 12)	non-coding (NR_148695, exon 1 of 12)	139	NR_148695	81832		NM_138966	ENSG00000166342	NETO1	BCTL1|BTCL1	neuropilin and tolloid like 1	protein-coding
190553	chr5	180796471	180797030	+	0	NA	intron (NR_157150, intron 1 of 1)	AluSx1|SINE|Alu	6056	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
14323	chr1	143887071	143887230	+	0	NA	intron (NR_160914, intron 1 of 2)	AluJb|SINE|Alu	12407	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
132116	chr2	101517221	101517480	+	0	NA	Intergenic	Intergenic	-42238	NM_001367509	731220		NM_207403	ENSG00000196460	RFX8	-	regulatory factor X8	protein-coding
193867	chr6	31570021	31570330	+	0	NA	intron (NR_149045, intron 1 of 1)	MER39|LTR|ERV1	-1924	NM_001159740	4049		NM_000595	ENSG00000226979	LTA	LT|TNFB|TNFSF1|TNLG1E	lymphotoxin alpha	protein-coding
191656	chr6	13404321	13404580	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	3687	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
83976	chr16	29275051	29275150	+	0	NA	Intergenic	Intergenic	-27187	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
221257	chr8	122779671	122780700	+	0	NA	Intergenic	CpG	-1470	NM_001362797	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
232610	chr9	136435271	136435430	+	0	NA	intron (NM_001318502, intron 1 of 9)	AluJb|SINE|Alu	4495	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
66131	chr14	60163771	60163930	+	0	NA	intron (NM_001322280, intron 1 of 6)	MER106B|DNA|hAT-Charlie	1548	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
111280	chr19	3554051	3555100	+	0	NA	intron (NM_001287529, intron 1 of 9)	intron (NM_001287529, intron 1 of 9)	3009	NM_001287529	126321		NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501|SLC59B1	major facilitator superfamily domain containing 12	protein-coding
47248	chr12	1131851	1132150	+	0	NA	intron (NM_178039, intron 6 of 17)	intron (NM_178039, intron 6 of 17)	104252	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
56224	chr12	111687271	111687780	+	0	NA	intron (NM_025247, intron 1 of 20)	MER20|DNA|hAT-Charlie	1472	NM_001136538	80724		NM_025247	ENSG00000111271	ACAD10	-	acyl-CoA dehydrogenase family member 10	protein-coding
94663	chr17	30325071	30325230	+	0	NA	intron (NM_206832, intron 3 of 6)	intron (NM_206832, intron 3 of 6)	8907	NM_001319942	388364		NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
219042	chr8	65750371	65751400	+	0	NA	intron (NM_001242318, intron 3 of 12)	L2|LINE|L2	38172	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
93813	chr17	20670571	20670730	+	0	NA	Intergenic	L1MEg|LINE|L1	-37399	NR_146887	105371582		NR_146887	ENSG00000227685	LINC02088	-	long intergenic non-protein coding RNA 2088	ncRNA
225770	chr9	37411121	37411580	+	0	NA	Intergenic	L2|LINE|L2	-11346	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
71953	chr15	23303151	23304530	+	0	NA	promoter-TSS (NR_160687)	promoter-TSS (NR_160687)	-330	NR_160688	102723534		NR_160687		LOC102723534	-	HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene	pseudo
149103	chr21	17139371	17139780	+	0	NA	Intergenic	AluSx3|SINE|Alu	-299315	NR_037586	100505929		NM_001005521		LINC01549	C21orf37	long intergenic non-protein coding RNA 1549	ncRNA
66838	chr14	64909721	64910180	+	0	NA	Intergenic	Intergenic	-4411	NM_001202559	100529261		NM_001202558	ENSG00000125954	CHURC1-FNTB	FNTB|FTase-beta	CHURC1-FNTB readthrough	protein-coding
191906	chr6	15417901	15418130	+	0	NA	intron (NM_001267040, intron 3 of 17)	intron (NM_001267040, intron 3 of 17)	169160	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
234264	chrX	13223971	13224130	+	0	NA	Intergenic	Intergenic	79402	NR_146309	109729169		NR_146309	ENSG00000235385	LINC02154	MALR	long intergenic non-protein coding RNA 2154	ncRNA
148291	chr20	63706571	63707070	+	0	NA	promoter-TSS (NM_001083113)	promoter-TSS (NM_001083113)	-622	NM_001083113	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
17653	chr1	157400071	157400230	+	0	NA	Intergenic	Intergenic	152365	NM_031281	83416		NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
237305	chrX	115887301	115887600	+	0	NA	intron (NR_147172, intron 2 of 2)	CpG	46486	NR_147172	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
79702	chr16	1302601	1302800	+	0	NA	Intergenic	Intergenic	-6452	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
46623	chr11	128622871	128623450	+	0	NA	Intergenic	Intergenic	-35602	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
193361	chr6	30322101	30322500	+	0	NA	intron (NR_024052, intron 1 of 4)	MER84|LTR|ERV1	3834	NR_052012	414778		NR_052012	ENSG00000270604	HCG17	HCG18|LINC00046|NCRNA00046	HLA complex group 17	ncRNA
138315	chr2	203745971	203746750	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	39721	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123515	chr19	54218221	54218700	+	0	NA	intron (NR_135496, intron 11 of 13).4	intron (NR_135496, intron 11 of 13).4	4547	NR_135494	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
23804	chr1	234356371	234357180	+	0	NA	Intergenic	CpG	16628	NR_125962	101927765		NR_125961	ENSG00000231663	COA6-AS1	-	COA6 antisense RNA 1	ncRNA
29611	chr10	71758521	71759100	+	0	NA	intron (NM_022153, intron 3 of 6)	AluJo|SINE|Alu	14710	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
78270	chr15	90855771	90855930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12738	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
70988	chr14	104714851	104715150	+	0	NA	intron (NM_001031714, intron 21 of 21)	CpG	-9229	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
236484	chrX	71650401	71650900	+	0	NA	Intergenic	Intergenic	16218	NR_136576	100129291		NR_136576	ENSG00000237265	LOC100129291	-	chromosome X open reading frame 49 pseudogene	pseudo
217200	chr8	26329801	26330000	+	0	NA	intron (NM_002717, intron 2 of 9)	MER20B|DNA|hAT-Charlie	36684	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
140467	chr2	233173871	233174230	+	0	NA	intron (NM_001017915, intron 17 of 26).2	Tigger3b|DNA|TcMar-Tigger	-77521	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
2268	chr1	8925621	8926080	+	0	NA	Intergenic	HERVFH21-int|LTR|ERV1	-20018	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
58481	chr12	132150201	132150880	+	0	NA	intron (NM_024078, intron 9 of 14)	CpG-6292	6083	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
110717	chr19	2311521	2312030	+	0	NA	Intergenic	AluSz|SINE|Alu	-3621	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
150797	chr21	43913671	43914350	+	0	NA	intron (NM_020132, intron 2 of 9)	Charlie1a|DNA|hAT-Charlie	-2778	NM_001369880	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
90136	chr17	114171	114700	+	0	NA	Intergenic	Intergenic	-23134	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
213421	chr7	138001321	138003080	+	0	NA	promoter-TSS (NM_194071)	promoter-TSS (NM_194071)	-114	NM_001253775	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
234786	chrX	24006821	24007130	+	0	NA	intron (NM_030624, intron 2 of 3)	AluJo|SINE|Alu	20211	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
145739	chr20	45084071	45084430	+	0	NA	Intergenic	MIRc|SINE|MIR	16877	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
233473	chr9	137745601	137746000	+	0	NA	intron (NM_024757, intron 6 of 26)	intron (NM_024757, intron 6 of 26)	42606	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
70239	chr14	101235351	101235450	+	0	NA	Intergenic	Intergenic	114544	NR_146490	101929422		NR_146490	ENSG00000259004	LINC02285	-	long intergenic non-protein coding RNA 2285	ncRNA
85718	chr16	56630221	56630650	+	0	NA	Intergenic	MIR|SINE|MIR	-2224	NM_176870	4499		NM_176870	ENSG00000205364	MT1M	MT-1M|MT-IM|MT1|MT1K	metallothionein 1M	protein-coding
131385	chr2	96253921	96254180	+	0	NA	exon (NM_001193304, exon 4 of 4)	exon (NM_001193304, exon 4 of 4)	11947	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
67679	chr14	73138451	73138550	+	0	NA	intron (NM_007318, intron 1 of 11)	AluY|SINE|Alu	1993	NM_007318	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
106413	chr18	13501971	13502130	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	42103	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
104616	chr17	81422801	81423430	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-22337	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
35730	chr11	2001871	2003150	+	0	NA	Intergenic	Intergenic	-1044	NR_131224	283120		NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2	H19 imprinted maternally expressed transcript	ncRNA
74088	chr15	52735151	52735980	+	0	NA	Intergenic	Intergenic	-25750	NM_001385019	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
121440	chr19	47033401	47033600	+	0	NA	intron (NM_002517, intron 5 of 11)	AluSp|SINE|Alu	-1817	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
223883	chr9	272801	273280	+	0	NA	promoter-TSS (NM_001190458)	promoter-TSS (NM_001190458)	-6	NM_001190458	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
110689	chr19	2282101	2282700	+	0	NA	promoter-TSS (NM_198532)	promoter-TSS (NM_198532)	-225	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
204110	chr7	2240451	2240750	+	0	NA	intron (NM_013393, intron 1 of 2)	intron (NM_013393, intron 1 of 2)	1605	NM_013393	29960		NM_013393	ENSG00000122687	MRM2	FJH1|FTSJ2|HEL97|MTDPS17|RRMJ2	mitochondrial rRNA methyltransferase 2	protein-coding
22069	chr1	211334821	211335310	+	0	NA	intron (NM_001319207, intron 1 of 10)	MIRc|SINE|MIR	8232	NM_001033910	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
237667	chrX	124303871	124304230	+	0	NA	Intergenic	L1M4|LINE|L1	-28610	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
107669	chr18	49067151	49067250	+	0	NA	intron (NM_001374431, intron 16 of 16)	intron (NM_001374431, intron 16 of 16)	-17432	NR_039898	100616420		NR_039898	ENSG00000263849	MIR4744	-	microRNA 4744	ncRNA
20132	chr1	192550901	192551730	+	0	NA	Intergenic	Intergenic	-24458	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
98513	chr17	47529121	47529650	+	0	NA	intron (NM_001330257, intron 1 of 23)	AluJb|SINE|Alu	-1723	NM_006310	9520		NM_006310	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
225123	chr9	33475321	33475780	+	0	NA	Intergenic	L1ME3A|LINE|L1	-1607	NM_139235	65083		NM_022917	ENSG00000165271	NOL6	NRAP|UTP22|bA311H10.1	nucleolar protein 6	protein-coding
239469	chrY	56729171	56729330	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-225005	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
6646	chr1	28962201	28962650	+	0	NA	intron (NM_001376013, intron 1 of 20)	L1MB7|LINE|L1	47849	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
109467	chr19	800631	801950	+	0	NA	intron (NM_031991, intron 2 of 13)	intron (NM_031991, intron 2 of 13)	-3650	NR_039900	100616459		NR_039900	ENSG00000284361	MIR4745	mir-4745	microRNA 4745	ncRNA
165029	chr3	71409851	71410150	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluJb|SINE|Alu	-105229	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
211163	chr7	102579821	102580080	+	0	NA	3' UTR (NM_006989, exon 21 of 21)	3' UTR (NM_006989, exon 21 of 21)	-7329	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
108006	chr18	58699521	58699780	+	0	NA	intron (NM_173844, intron 3 of 15)	Tigger4a|DNA|TcMar-Tigger	-27777	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
226874	chr9	78132351	78133030	+	0	NA	Intergenic	Intergenic	-100879	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
110560	chr19	2112171	2113750	+	0	NA	exon (NM_001261826, exon 24 of 32)	exon (NM_001261826, exon 24 of 32)	16045	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
47951	chr12	6850521	6851500	+	0	NA	intron (NR_123727, intron 1 of 5)	intron (NR_123727, intron 1 of 5)	276	NR_123727	83461		NM_031299	ENSG00000111665	CDCA3	GRCC8|TOME-1|TOME1	cell division cycle associated 3	protein-coding
152466	chr22	20708921	20709730	+	0	NA	exon (NM_058004, exon 54 of 55)	exon (NM_058004, exon 54 of 55)	8211	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
200061	chr6	130026851	130027380	+	0	NA	intron (NM_001007102, intron 2 of 21)	intron (NM_001007102, intron 2 of 21)	7471	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
217081	chr8	23726551	23726650	+	0	NA	Intergenic	CpG	-19844	NM_001136271	137814		NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding
142796	chr20	13640301	13640500	+	0	NA	Intergenic	Intergenic	-1464	NM_001323602	55617		NM_017714	ENSG00000089123	TASP1	C20orf13|SULEHS|dJ585I14.2	taspase 1	protein-coding
24380	chr1	241706271	241706470	+	0	NA	intron (NM_001367482, intron 8 of 27)	intron (NM_001367482, intron 8 of 27)	54089	NM_001367482	128025		NM_144625	ENSG00000162843	WDR64	-	WD repeat domain 64	protein-coding
107580	chr18	48841151	48841580	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	101442	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
89590	chr16	89278471	89279100	+	0	NA	intron (NM_013275, intron 9 of 12)	G-rich|Low_complexity|Low_complexity	-17343	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
137533	chr2	197212601	197213350	+	0	NA	intron (NM_153697, intron 1 of 9)	MamRep137|DNA|TcMar-Tigger	14984	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
166558	chr3	115660751	115661750	+	0	NA	intron (NM_002045, intron 1 of 2)	intron (NM_002045, intron 1 of 2)	37740	NM_001130064	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
82484	chr16	17345171	17345330	+	0	NA	intron (NM_022166, intron 2 of 11)	intron (NM_022166, intron 2 of 11)	125710	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
104134	chr17	80372851	80373150	+	0	NA	exon (NM_001256071, exon 49 of 68)	exon (NM_001256071, exon 49 of 68)	-42167	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
66720	chr14	64446621	64447080	+	0	NA	intron (NM_001364837, intron 22 of 26)	intron (NM_001364837, intron 22 of 26)	-18649	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
238285	chrX	149477951	149478430	+	0	NA	3' UTR (NM_000202, exon 9 of 9)	3' UTR (NM_000202, exon 9 of 9)	27116	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
9874	chr1	54310301	54311650	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	74532	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
172983	chr4	4143851	4143950	+	0	NA	Intergenic	CpG	83029	NM_177998	133060		NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
155600	chr22	38782721	38783430	+	0	NA	intron (NM_005740, intron 1 of 3)	intron (NM_005740, intron 1 of 3)	11068	NM_005740	10126		NM_005740	ENSG00000100246	DNAL4	MRMV3|PIG27	dynein axonemal light chain 4	protein-coding
199071	chr6	111646301	111646500	+	0	NA	Intergenic	U13|snRNA|snRNA	-40126	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
145951	chr20	46099651	46099950	+	0	NA	Intergenic	Intergenic	-9838	NM_020967	57727		NM_020967	ENSG00000124160	NCOA5	CIA|bA465L10.6	nuclear receptor coactivator 5	protein-coding
92255	chr17	7989721	7991100	+	0	NA	Intergenic	Intergenic	-12205	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
30759	chr10	84280201	84280430	+	0	NA	intron (NR_038220, intron 1 of 5)	L1PA2|LINE|L1	335	NR_038220	170425		NR_038220	ENSG00000229404	LINC00858	CRCAL-2|LNMAT2	long intergenic non-protein coding RNA 858	ncRNA
235452	chrX	46528151	46528250	+	0	NA	intron (NM_001190417, intron 5 of 5)	intron (NM_001190417, intron 5 of 5)	17221	NM_001039891	641339		NM_001039891	ENSG00000251192	ZNF674	MRX92|ZNF673B	zinc finger protein 674	protein-coding
140838	chr2	236967901	236968680	+	0	NA	Intergenic	Intergenic	87877	NR_135202	93463		NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA
8053	chr1	38818021	38819230	+	0	NA	Intergenic	CpG	41147	NM_001271851	64121		NM_022157	ENSG00000116954	RRAGC	GTR2|LNGODS|LNGOS|RAGC|TIB929	Ras related GTP binding C	protein-coding
172212	chr4	1296821	1297080	+	0	NA	intron (NR_123716, intron 1 of 6)	L2a|LINE|L2	7059	NM_001297431	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
14093	chr1	120894371	120894630	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	4754	NM_001143883	653505		NM_001143883	ENSG00000263353	PPIAL4A	COAS-2|COAS2|PPIAL4|PPIAL4B	peptidylprolyl isomerase A like 4A	protein-coding
112685	chr19	7051451	7051800	+	0	NA	3' UTR (NM_144614, exon 2 of 2)	3' UTR (NM_144614, exon 2 of 2)	2285	NM_144614	125997		NM_144614	ENSG00000230522	MBD3L2	-	methyl-CpG binding domain protein 3 like 2	protein-coding
165247	chr3	73039771	73039930	+	0	NA	intron (NM_001318025, intron 2 of 7)	AluSq2|SINE|Alu	-21809	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
93449	chr17	18678501	18679330	+	0	NA	intron (NM_001368134, intron 3 of 3)	MLT1K|LTR|ERVL-MaLR	3399	NM_001368135	2310		NM_001368134	ENSG00000240445	FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B	protein-coding
231215	chr9	129958201	129958400	+	0	NA	intron (NM_001363755, intron 5 of 15)	AluSz|SINE|Alu	84889	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
89565	chr16	89254971	89255730	+	0	NA	Intergenic	AluY|SINE|Alu	37647	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
22603	chr1	223248271	223249230	+	0	NA	intron (NM_001037175, intron 5 of 5)	intron (NM_001037175, intron 5 of 5)	-105502	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
180411	chr5	10359701	10360630	+	0	NA	intron (NM_001270661, intron 1 of 22)	AluSq|SINE|Alu	6470	NM_001270661	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
155950	chr22	39688151	39688450	+	0	NA	3' UTR (NM_021096, exon 37 of 37)	3' UTR (NM_021096, exon 37 of 37)	117547	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
112418	chr19	6220051	6220930	+	0	NA	intron (NM_005934, intron 6 of 11)	intron (NM_005934, intron 6 of 11)	59485	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
152498	chr22	20928001	20928430	+	0	NA	intron (NR_156180, intron 1 of 3)	AluJb|SINE|Alu	10808	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
145601	chr20	44614801	44615750	+	0	NA	intron (NM_007066, intron 3 of 3)	L2|LINE|L2	32696	NM_001281445	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
142768	chr20	10671501	10671980	+	0	NA	intron (NM_000214, intron 2 of 25)	intron (NM_000214, intron 2 of 25)	2259	NM_000214	182		NM_000214	ENSG00000101384	JAG1	AGS|AGS1|AHD|AWS|CD339|CMT2HH|DCHE|HJ1|JAGL1	jagged canonical Notch ligand 1	protein-coding
102852	chr17	76487771	76488130	+	0	NA	5' UTR (NM_001376229, exon 2 of 19)	5' UTR (NM_001376229, exon 2 of 19)	13473	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
128851	chr2	63855471	63855630	+	0	NA	intron (NM_001377529, intron 2 of 11)	AluJb|SINE|Alu	13654	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
165323	chr3	88003171	88003480	+	0	NA	Intergenic	Intergenic	20749	NM_000866	3355		NM_000866	ENSG00000179097	HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	5-hydroxytryptamine receptor 1F	protein-coding
118804	chr19	38478601	38478800	+	0	NA	intron (NM_000540, intron 31 of 105)	intron (NM_000540, intron 31 of 105)	45009	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
21635	chr1	206609651	206609950	+	0	NA	intron (NM_001201478, intron 2 of 12)	intron (NM_001201478, intron 2 of 12)	2665	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
119976	chr19	41901101	41901350	+	0	NA	intron (NM_004706, intron 14 of 28)	AluSg|SINE|Alu	16782	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
178446	chr4	148021721	148021980	+	0	NA	intron (NM_024605, intron 18 of 22)	intron (NM_024605, intron 18 of 22)	239255	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
145865	chr20	45931071	45931480	+	0	NA	Intergenic	AluJr4|SINE|Alu	-3408	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
180597	chr5	15396551	15396650	+	0	NA	Intergenic	L1PA3|LINE|L1	-103580	NM_012304	23194		NM_012304	ENSG00000183580	FBXL7	FBL6|FBL7	F-box and leucine rich repeat protein 7	protein-coding
10822	chr1	77937221	77937480	+	0	NA	intron (NM_144573, intron 11 of 12)	intron (NM_144573, intron 11 of 12)	41722	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
81686	chr16	11219471	11220030	+	0	NA	Intergenic	AluSz|SINE|Alu	36432	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
189214	chr5	171440251	171441150	+	0	NA	intron (NM_003862, intron 3 of 4)	MIR3|SINE|MIR	21053	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
44205	chr11	96294401	96294600	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-46938	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
57887	chr12	123434001	123434450	+	0	NA	intron (NM_145058, intron 1 of 3)	AluJo|SINE|Alu	2508	NR_130703	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
10993	chr1	84504571	84504950	+	0	NA	intron (NM_005274, intron 2 of 3)	intron (NM_005274, intron 2 of 3)	-1626	NM_001310156	100505741		NM_022354	ENSG00000122432	SPATA1	SP-2|SPAP1	spermatogenesis associated 1	protein-coding
3413	chr1	15764021	15764280	+	0	NA	promoter-TSS (NM_001024215)	promoter-TSS (NM_001024215)	-349	NM_001024215	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
43114	chr11	75147701	75147850	+	0	NA	Intergenic	Intergenic	-3332	NM_001145212	11309		NM_007256	ENSG00000137491	SLCO2B1	OATP-B|OATP2B1|OATPB|SLC21A9	solute carrier organic anion transporter family member 2B1	protein-coding
109838	chr19	1199901	1200100	+	0	NA	Intergenic	AluJb|SINE|Alu	-5778	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
128965	chr2	64644301	64645280	+	0	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	9123	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
174028	chr4	26819421	26819680	+	0	NA	Intergenic	L2a|LINE|L2	40694	NR_134675	105374546		NR_134673		STIM2-AS1	-	STIM2 antisense RNA 1	ncRNA
48835	chr12	12359151	12359600	+	0	NA	intron (NM_001330356, intron 1 of 2)	AluSz|SINE|Alu	2297	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
75250	chr15	64901871	64902830	+	0	NA	Intergenic	AluSg|SINE|Alu	-9552	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
63904	chr14	21902471	21903150	+	0	NA	Intergenic	Intergenic	-231793	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
31327	chr10	92847101	92847300	+	0	NA	intron (NM_001013848, intron 2 of 22)	MLT1D|LTR|ERVL-MaLR	-1255	NM_001319200	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
49608	chr12	27652351	27652450	+	0	NA	intron (NM_177444, intron 7 of 28)	intron (NM_177444, intron 7 of 28)	-44047	NM_001029874	387849		NM_001029874	ENSG00000174236	REP15	RAB15EP	RAB15 effector protein	protein-coding
163569	chr3	51938601	51938800	+	0	NA	intron (NM_004704, intron 2 of 14)	HAL1|LINE|L1	3204	NM_004704	9136		NM_004704	ENSG00000114767	RRP9	RNU3IP2|U3-55K	ribosomal RNA processing 9, U3 small nucleolar RNA binding protein	protein-coding
234422	chrX	16811771	16812330	+	0	NA	intron (NM_001168683, intron 1 of 7)	AluSx1|SINE|Alu	25584	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
138807	chr2	216169451	216169750	+	0	NA	intron (NM_021141, intron 16 of 20)	MER49|LTR|ERV1	-47289	NR_037701	150967		NM_001199924	ENSG00000260804	LINC01963	PKI55	long intergenic non-protein coding RNA 1963	ncRNA
208809	chr7	73627671	73628030	+	0	NA	Intergenic	MIR3|SINE|MIR	-3328	NM_032952	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
77877	chr15	88918801	88919000	+	0	NA	Intergenic	Intergenic	-5521	NM_001310320	4240		NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule EGF and factor V/VIII domain containing	protein-coding
43774	chr11	86251221	86251680	+	0	NA	intron (NM_001330334, intron 2 of 9)	intron (NM_001330334, intron 2 of 9)	6697	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
47576	chr12	4531051	4531730	+	0	NA	intron (NR_144380, intron 3 of 10)	intron (NR_144380, intron 3 of 10)	7079	NM_020374	57102		NM_020374	ENSG00000047621	FERRY3	C12orf4|Fy-3|MRT66	FERRY endosomal RAB5 effector complex subunit 3	protein-coding
144921	chr20	36974651	36975930	+	0	NA	Intergenic	L1ME1|LINE|L1	-23582	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
88158	chr16	81688051	81688430	+	0	NA	intron (NM_030629, intron 10 of 20)	intron (NM_030629, intron 10 of 20)	22886	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
42580	chr11	72002901	72003900	+	0	NA	TTS (NM_005699)	TTS (NM_005699)	3473	NM_001145055	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
49494	chr12	25276171	25276450	+	0	NA	Intergenic	Intergenic	-25381	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
43615	chr11	83183851	83184350	+	0	NA	TTS (NR_149009)	TTS (NR_149009)	3384	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
75451	chr15	65827851	65827950	+	0	NA	Intergenic	Intergenic	-35607	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
44865	chr11	114182851	114183780	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	-74491	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
71459	chr14	105861371	105861530	+	0	NA	Intergenic	Intergenic	-1897	NR_130466	100616422		NR_130466	ENSG00000264781	MIR4537	-	microRNA 4537	ncRNA
193789	chr6	31401501	31401800	+	0	NA	intron (NM_001289152, intron 1 of 5).3	AluJr|SINE|Alu	939	NM_001289152	100507436		NM_000247	ENSG00000204520	MICA	MIC-A|PERB11.1	MHC class I polypeptide-related sequence A	protein-coding
163680	chr3	52238571	52240300	+	0	NA	promoter-TSS (NM_007284)	promoter-TSS (NM_007284)	197	NR_135307	101929054		NR_135307	ENSG00000243224	TWF2-DT	-	TWF2 divergent transcript	ncRNA
164353	chr3	58041151	58041500	+	0	NA	intron (NM_001164319, intron 1 of 44)	intron (NM_001164319, intron 1 of 44)	32903	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
9048	chr1	44801601	44806700	+	0	NA	intron (NM_004073, intron 10 of 14)	intron (NM_004073, intron 10 of 14)	3135	NM_001013632	343521		NM_001013632	ENSG00000188396	DYNLT4	TCTEX1D4	dynein light chain Tctex-type 4	protein-coding
88851	chr16	87603951	87604250	+	0	NA	exon (NM_001271605, exon 2 of 2)	exon (NM_001271605, exon 2 of 2)	1592	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
67886	chr14	74400871	74402030	+	0	NA	Intergenic	Intergenic	24760	NM_001105579	646658		NM_001105579	ENSG00000183379	SYNDIG1L	CAPUCIN|DSPC1|IFITMD4|SynDIG2|TMEM90A	synapse differentiation inducing 1 like	protein-coding
30601	chr10	80168801	80169530	+	0	NA	exon (NM_001278408, exon 6 of 17)	exon (NM_001278408, exon 6 of 17)	35326	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
154920	chr22	37204951	37205350	+	0	NA	3' UTR (NM_001278687, exon 2 of 2)	3' UTR (NM_001278687, exon 2 of 2)	5539	NM_001278687	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
3816	chr1	16761171	16761650	+	0	NA	intron (NM_001271733, intron 1 of 14)	intron (NM_001271733, intron 1 of 14)	3070	NM_001271733	11223		NM_001271733	ENSG00000186715	MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P|MST1P7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1 like (pseudogene)	pseudo
53653	chr12	68345771	68345950	+	0	NA	Intergenic	L2|LINE|L2	-13446	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
203441	chr7	361321	361850	+	0	NA	Intergenic	CpG	-17840	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
92534	chr17	8939151	8940080	+	0	NA	intron (NM_001142633, intron 1 of 18)	Charlie4a|DNA|hAT-Charlie	26092	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
44890	chr11	114439171	114440350	+	0	NA	intron (NM_015523, intron 1 of 6)	CpG	293	NM_015523	25996		NM_015523	ENSG00000076043	REXO2	CGI-114|REX2|RFN|SFN	RNA exonuclease 2	protein-coding
62870	chr13	110611171	110611700	+	0	NA	Intergenic	MER41G|LTR|ERV1	-4025	NR_040104	55739		NM_018210	ENSG00000213995	NAXD	CARKD|LP3298|PEBEL2	NAD(P)HX dehydratase	protein-coding
214139	chr7	144347051	144347350	+	0	NA	intron (NR_126022, intron 1 of 3)	AluSx|SINE|Alu	-8202	NM_005435	7984		NM_005435	ENSG00000050327	ARHGEF5	GEF5|P60|TIM|TIM1	Rho guanine nucleotide exchange factor 5	protein-coding
89462	chr16	89046071	89046230	+	0	NA	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	-47702	NR_147928	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
237311	chrX	117425121	117425400	+	0	NA	Intergenic	Intergenic	548478	NM_033495	90293		NM_033495	ENSG00000003096	KLHL13	BKLHD2	kelch like family member 13	protein-coding
59022	chr13	20197201	20197780	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-4552	NM_004004	2706		NM_004004	ENSG00000165474	GJB2	BAPS|CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein beta 2	protein-coding
185034	chr5	115622501	115622700	+	0	NA	intron (NM_181836, intron 1 of 2)	MER20|DNA|hAT-Charlie	3436	NM_181836	51014		NM_181836	ENSG00000134970	TMED7	CGI-109|Tag|p24g3|p24gamma3|p27	transmembrane p24 trafficking protein 7	protein-coding
173310	chr4	7323951	7325100	+	0	NA	intron (NM_020777, intron 1 of 26)	intron (NM_020777, intron 1 of 26)	14075	NR_039961	100616471		NR_039961	ENSG00000264658	MIR4798	-	microRNA 4798	ncRNA
82767	chr16	21431271	21431430	+	0	NA	TTS (NR_024456).2	TTS (NR_024456).2	3105	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
69641	chr14	97777521	97777800	+	0	NA	Intergenic	Intergenic	-14829	NR_146447	100132612		NR_146447	ENSG00000258869	LINC02312	-	long intergenic non-protein coding RNA 2312	ncRNA
230730	chr9	128822371	128823350	+	0	NA	TTS (NM_004435)	TTS (NM_004435)	4360	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
161548	chr3	42657351	42658330	+	0	NA	intron (NM_145166, intron 1 of 5)	intron (NM_145166, intron 1 of 5)	-3452	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
105460	chr17	83048171	83049680	+	0	NA	intron (NR_135465, intron 1 of 13)	intron (NR_135465, intron 1 of 13)	2845	NR_135465	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
155264	chr22	38005151	38005250	+	0	NA	intron (NM_001301130, intron 5 of 5)	MIRb|SINE|MIR	16406	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
169573	chr3	170366571	170366730	+	0	NA	intron (NM_001145098, intron 3 of 7)	AluSx|SINE|Alu	7027	NM_001248008	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
118085	chr19	34363701	34363930	+	0	NA	promoter-TSS (NM_001289789).2	promoter-TSS (NM_001289789).2	-925	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
166770	chr3	122413151	122413450	+	0	NA	TTS (NM_014367)	TTS (NM_014367)	2762	NM_019069	54554		NM_019069	ENSG00000196981	WDR5B	-	WD repeat domain 5B	protein-coding
185301	chr5	126675871	126676500	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	44480	NM_207408	389320		NM_207408	ENSG00000196900	SPMIP10	C5orf48|TEX43|Tseg7	sperm microtubule inner protein 10	protein-coding
114408	chr19	12646621	12646880	+	0	NA	intron (NM_001173498, intron 23 of 23)	intron (NM_001173498, intron 23 of 23)	19992	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
193617	chr6	30742101	30745200	+	0	NA	promoter-TSS (NM_005803)	promoter-TSS (NM_005803)	687	NR_149095	105379695		NR_149095	ENSG00000272273	IER3-AS1	-	IER3 antisense RNA 1	ncRNA
196679	chr6	44649471	44649630	+	0	NA	Intergenic	L1MC3|LINE|L1	-97669	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
175058	chr4	53908671	53908930	+	0	NA	Intergenic	Intergenic	78482	NR_027153	402176		NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo
232860	chr9	136797071	136797880	+	0	NA	intron (NM_001039374, intron 1 of 13)	AluY|SINE|Alu	1137	NM_001039374	84960		NM_032874	ENSG00000213213	CCDC183	KIAA1984|PARF|bA216L13.7	coiled-coil domain containing 183	protein-coding
223216	chr8	143593051	143593680	+	0	NA	intron (NM_001130053, intron 1 of 9).2	intron (NM_001130053, intron 1 of 9).2	4048	NM_001130057	1936		NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding
143047	chr20	21323051	21323730	+	0	NA	intron (NM_001317960, intron 1 of 29)	intron (NM_001317960, intron 1 of 29)	19892	NM_001317960	22803		NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
174202	chr4	37453551	37454050	+	0	NA	promoter-TSS (NM_001104629)	promoter-TSS (NM_001104629)	-125	NM_001104629	55286		NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
105791	chr18	2893051	2893550	+	0	NA	intron (NM_032048, intron 4 of 7)	intron (NM_032048, intron 4 of 7)	46294	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
179146	chr4	169617971	169618730	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-2228	NM_001829	1182		NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3|NEDHYBA|NEDSBA	chloride voltage-gated channel 3	protein-coding
21134	chr1	203657051	203657950	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	29563	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
111015	chr19	3054221	3054650	+	0	NA	intron (NM_198969, intron 5 of 6)	intron (NM_198969, intron 5 of 6)	-6800	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
151095	chr21	44845571	44847080	+	0	NA	Intergenic	Intergenic	27365	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
53334	chr12	64631101	64631700	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-8795	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52854	chr12	57108271	57108430	+	0	NA	intron (NR_033659, intron 1 of 20)	intron (NR_033659, intron 1 of 20)	1939	NM_001178079	6778		NM_003153	ENSG00000166888	STAT6	D12S1644|HIES6|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6	protein-coding
159957	chr3	17300221	17300750	+	0	NA	intron (NM_001349090, intron 14 of 21)	intron (NM_001349090, intron 14 of 21)	367289	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
54078	chr12	76046951	76047650	+	0	NA	3' UTR (NM_004537, exon 15 of 15)	3' UTR (NM_004537, exon 15 of 15)	-15524	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
97982	chr17	45264371	45265250	+	0	NA	intron (NM_003954, intron 15 of 15)	intron (NM_003954, intron 15 of 15)	-2716	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
50741	chr12	48990471	48990630	+	0	NA	Intergenic	Intergenic	-7797	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
169240	chr3	157146201	157147380	+	0	NA	TTS (NM_020307)	TTS (NM_020307)	13357	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
176529	chr4	97633951	97634050	+	0	NA	intron (NM_174952, intron 10 of 10)	L1PA3|LINE|L1	267074	NR_102713	101410545		NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
18587	chr1	165397951	165398250	+	0	NA	Intergenic	MIR|SINE|MIR	26884	NM_001256571	6258		NM_006917	ENSG00000143171	RXRG	NR2B3|RXR-gamma|RXRC|RXRgamma	retinoid X receptor gamma	protein-coding
190128	chr5	178007971	178008130	+	0	NA	non-coding (NR_149722, exon 1 of 16)	non-coding (NR_149722, exon 1 of 16)	358	NR_149722	653316		NM_001079527	ENSG00000204677	FAM153CP	FAM153C|NY-REN-7-like	protein FAM153C	pseudo
185978	chr5	133244271	133244630	+	0	NA	intron (NM_015082, intron 7 of 15)	intron (NM_015082, intron 7 of 15)	183256	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
227855	chr9	93574201	93574880	+	0	NA	Intergenic	Intergenic	-2044	NM_005392	5253		NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding
96599	chr17	40536201	40537380	+	0	NA	Intergenic	Intergenic	23604	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
130714	chr2	86738671	86739030	+	0	NA	intron (NM_022780, intron 1 of 8)	L2a|LINE|L2	-17728	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
157409	chr22	44984151	44984250	+	0	NA	intron (NM_001284296, intron 2 of 13)	(CCA)n|Simple_repeat|Simple_repeat	19419	NR_147506	101927551		NR_147506	ENSG00000230922	LOC101927551	-	uncharacterized LOC101927551	ncRNA
65284	chr14	50040001	50041350	+	0	NA	intron (NR_131171, intron 4 of 8)	intron (NR_131171, intron 4 of 8)	-33155	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
126450	chr2	28251201	28251780	+	0	NA	intron (NM_199193, intron 11 of 13)	intron (NM_199193, intron 11 of 13)	-44529	NR_120504	100505736		NR_120504		LOC100505736	-	uncharacterized LOC100505736	ncRNA
102956	chr17	76698721	76699180	+	0	NA	intron (NM_001008528, intron 1 of 3)	AluSz|SINE|Alu	-10063	NR_130928	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
216487	chr8	20133701	20133950	+	0	NA	Intergenic	Intergenic	49311	NM_001142324	6570		NM_003053	ENSG00000036565	SLC18A1	CGAT|VAT1|VMAT1	solute carrier family 18 member A1	protein-coding
137281	chr2	195503151	195503550	+	0	NA	Intergenic	Intergenic	-153608	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
159607	chr3	15249871	15250800	+	0	NA	intron (NR_164765, intron 18 of 18)	AluJr|SINE|Alu	-3849	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
90403	chr17	1307501	1307700	+	0	NA	Intergenic	AluY|SINE|Alu	27938	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
143229	chr20	24980671	24982180	+	0	NA	intron (NM_020531, intron 2 of 8)	intron (NM_020531, intron 2 of 8)	11326	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
87935	chr16	79361321	79361580	+	0	NA	Intergenic	Intergenic	239287	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
202100	chr6	154730921	154731180	+	0	NA	Intergenic	AluSc5|SINE|Alu	-2328	NM_001286189	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
220662	chr8	101133821	101134400	+	0	NA	Intergenic	MIR|SINE|MIR	36129	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
200783	chr6	137877421	137878080	+	0	NA	intron (NM_006290, intron 6 of 8)	intron (NM_006290, intron 6 of 8)	-9517	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
102606	chr17	75927371	75927530	+	0	NA	intron (NM_001319193, intron 8 of 28)	intron (NM_001319193, intron 8 of 28)	10782	NM_001319193	85302		NM_001080542	ENSG00000188878	FBF1	Alb|FBF-1	Fas binding factor 1	protein-coding
217763	chr8	31184921	31185580	+	0	NA	Intergenic	Intergenic	151440	NM_000553	7486		NM_000553	ENSG00000165392	WRN	RECQ3|RECQL2|RECQL3	WRN RecQ like helicase	protein-coding
27986	chr10	42990471	42990630	+	0	NA	Intergenic	Intergenic	-7013	NR_049836	100847014		NR_049836	ENSG00000263795	MIR5100	-	microRNA 5100	ncRNA
227961	chr9	94908001	94908200	+	0	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	37454	NR_147613	101928119		NR_147613		LOC101928119	-	uncharacterized LOC101928119	ncRNA
130613	chr2	85995171	85995330	+	0	NA	Intergenic	Intergenic	105970	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
97791	chr17	44760071	44760300	+	0	NA	intron (NM_001318933, intron 2 of 26)	intron (NM_001318933, intron 2 of 26)	1197	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
11824	chr1	92851551	92851850	+	0	NA	intron (NM_001252269, intron 1 of 3)	L1M7|LINE|L1	10981	NR_002444	26782		NR_002444	ENSG00000207523	SNORA66	RNU66|U66	small nucleolar RNA, H/ACA box 66	snoRNA
36369	chr11	3950921	3951930	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	95363	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
131831	chr2	98656421	98657200	+	0	NA	intron (NM_001160154, intron 3 of 12)	intron (NM_001160154, intron 3 of 12)	6663	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
58280	chr12	130086251	130086750	+	0	NA	Intergenic	Intergenic	15165	NR_146538	105370078		NR_146538		LINC02419	-	long intergenic non-protein coding RNA 2419	ncRNA
41007	chr11	65419901	65420530	+	0	NA	Intergenic	Intergenic	-2583	NR_028272	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
198332	chr6	103709451	103709550	+	0	NA	Intergenic	L1PA2|LINE|L1	1150046	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
81879	chr16	11676171	11676930	+	0	NA	3' UTR (NM_003498, exon 2 of 2)	3' UTR (NM_003498, exon 2 of 2)	8095	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
85871	chr16	57040811	57044030	+	0	NA	intron (NM_001384955, intron 19 of 47)	intron (NM_001384955, intron 19 of 47)	-50163	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
50978	chr12	49558551	49558730	+	0	NA	TTS (NM_012284)	TTS (NM_012284)	7799	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
161989	chr3	46361031	46361650	+	0	NA	TTS (NM_001123041)	TTS (NM_001123041)	7229	NM_001123396	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
34486	chr10	132536501	132538250	+	0	NA	promoter-TSS (NR_158224)	promoter-TSS (NR_158224)	-412	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
238169	chrX	136864571	136865680	+	0	NA	Intergenic	AluY|SINE|Alu	14146	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
108167	chr18	62869301	62869980	+	0	NA	intron (NM_194449, intron 4 of 16)	intron (NM_194449, intron 4 of 16)	154099	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
22970	chr1	226071301	226071530	+	0	NA	exon (NM_002107, exon 4 of 4)	exon (NM_002107, exon 4 of 4)	8688	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
23264	chr1	227890401	227890600	+	0	NA	Intergenic	Intergenic	51183	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
88396	chr16	84629551	84630050	+	0	NA	Intergenic	Intergenic	-11722	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
131516	chr2	96551921	96553130	+	0	NA	3' UTR (NM_001319085, exon 7 of 7)	3' UTR (NM_001319085, exon 7 of 7)	14646	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
87457	chr16	71412651	71413050	+	0	NA	intron (NR_146574, intron 2 of 2)	intron (NR_146574, intron 2 of 2)	13614	NR_146574	105371333		NR_146574		LINC02136	-	long intergenic non-protein coding RNA 2136	ncRNA
85178	chr16	46830101	46831830	+	0	NA	promoter-TSS (NR_145835)	promoter-TSS (NR_145835)	83	NR_145837	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
217664	chr8	30092151	30092250	+	0	NA	Intergenic	MER34A|LTR|ERV1	-3208	NM_001128208	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
200684	chr6	137232771	137233100	+	0	NA	Intergenic	Intergenic	-13550	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
119872	chr19	41457171	41457630	+	0	NA	intron (NR_040109, intron 3 of 3)	MER21-int|LTR|ERVL	14244	NM_001130514	100170765		NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
138586	chr2	207925551	207926050	+	0	NA	intron (NM_001080475, intron 5 of 7)	intron (NM_001080475, intron 5 of 7)	99727	NM_001080475	389072		NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
123386	chr19	53916171	53916530	+	0	NA	intron (NM_001384801, intron 4 of 4)	MIRb|SINE|MIR	7072	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
78471	chr15	92893751	92894130	+	0	NA	intron (NR_037600, intron 4 of 4)	AluSq|SINE|Alu	-6384	NM_001271	1106		NM_001271	ENSG00000173575	CHD2	DEE94|EEOC	chromodomain helicase DNA binding protein 2	protein-coding
224153	chr9	4924171	4924550	+	0	NA	Intergenic	Intergenic	-60726	NM_001322195	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
137000	chr2	190599151	190599250	+	0	NA	Intergenic	Intergenic	-49695	NM_001321313	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
186115	chr5	134138471	134139600	+	0	NA	exon (NM_003202, exon 5 of 10)	exon (NM_003202, exon 5 of 10)	15417	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
164059	chr3	53845951	53846800	+	0	NA	promoter-TSS (NM_018725)	promoter-TSS (NM_018725)	44	NM_018397	55349		NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
51563	chr12	52580101	52580600	+	0	NA	Intergenic	Intergenic	-6507	NM_175053	121391		NM_175053	ENSG00000170484	KRT74	ADWH|ECTD7|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4	keratin 74	protein-coding
168919	chr3	152347551	152347850	+	0	NA	intron (NM_001376837, intron 2 of 9)	MIRc|SINE|MIR	-6710	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
179179	chr4	173167351	173167450	+	0	NA	intron (NR_134241, intron 2 of 3)	AluSx|SINE|Alu	-1411	NM_001375599	51809		NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
159365	chr3	13314951	13315050	+	0	NA	Intergenic	Intergenic	-31743	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
209944	chr7	92625301	92626180	+	0	NA	intron (NM_001145306, intron 5 of 7)	intron (NM_001145306, intron 5 of 7)	-35350	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
98633	chr17	47808051	47808800	+	0	NA	intron (NM_145798, intron 22 of 22)	intron (NM_145798, intron 22 of 22)	13369	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
226323	chr9	69030201	69030400	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-5452	NM_000144	2395		NM_000144	ENSG00000165060	FXN	CyaY|FA|FARR|FRDA|X25	frataxin	protein-coding
37014	chr11	12047151	12047780	+	0	NA	intron (NR_135109, intron 1 of 1)	intron (NR_135109, intron 1 of 1)	16590	NR_135109	105376554		NR_135109	ENSG00000254486	LINC02547	-	long intergenic non-protein coding RNA 2547	ncRNA
160051	chr3	18449651	18450000	+	0	NA	intron (NR_125803, intron 1 of 6)	MER11A|LTR|ERVK	-4233	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
24855	chr10	500901	501180	+	0	NA	intron (NM_014974, intron 1 of 36)	intron (NM_014974, intron 1 of 36)	-127524	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
196646	chr6	44294471	44295230	+	0	NA	intron (NM_182539, intron 1 of 4)	intron (NM_182539, intron 1 of 4)	2848	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
238010	chrX	134965221	134965750	+	0	NA	Intergenic	Intergenic	15936	NR_134925	340581		NR_134925	ENSG00000236091	LINC02243	-	long intergenic non-protein coding RNA 2243	ncRNA
230398	chr9	128108171	128108330	+	0	NA	non-coding (NR_049766, exon 10 of 10)	non-coding (NR_049766, exon 10 of 10)	9768	NR_049766	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
171421	chr3	196222551	196222650	+	0	NA	intron (NM_152672, intron 2 of 8)	AluSx1|SINE|Alu	6066	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
234950	chrX	38810551	38810850	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-6817	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
13887	chr1	119294771	119295080	+	0	NA	Intergenic	Intergenic	-33327	NR_146623	105378934		NR_146623	ENSG00000232650	LINC01780	-	long intergenic non-protein coding RNA 1780	ncRNA
201339	chr6	144500851	144501230	+	0	NA	intron (NM_007124, intron 33 of 73)	intron (NM_007124, intron 33 of 73)	-82108	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
8508	chr1	40875651	40876350	+	0	NA	Intergenic	Intergenic	-13637	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
131337	chr2	96148061	96149250	+	0	NA	Intergenic	Intergenic	-3215	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
226247	chr9	67705671	67705830	+	0	NA	Intergenic	CpG	-5927	NR_121606	102723709		NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
61442	chr13	51923921	51924180	+	0	NA	Intergenic	Intergenic	62081	NM_031290	83446		NM_031290	ENSG00000123171	CCDC70	-	coiled-coil domain containing 70	protein-coding
138978	chr2	218282851	218283150	+	0	NA	intron (NM_022152, intron 1 of 11)	intron (NM_022152, intron 1 of 11)	-2812	NR_106768	102465256		NR_106768	ENSG00000284173	MIR6513	hsa-mir-6513|mir-6513	microRNA 6513	ncRNA
146016	chr20	46690821	46691080	+	0	NA	Intergenic	L1MA8|LINE|L1	-1506	NM_033550	112858		NM_033550	ENSG00000172315	TP53RK	BUD32|C20orf64|GAMOS4|Nori-2|Nori-2p|PRPK|TPRKB|dJ101A2	TP53 regulating kinase	protein-coding
16503	chr1	154868601	154869380	+	0	NA	promoter-TSS (NM_001365837)	promoter-TSS (NM_001365837)	-920	NM_001365838	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
154452	chr22	35398351	35398450	+	0	NA	Intergenic	AluJr|SINE|Alu	-1740	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
142925	chr20	18465351	18465450	+	0	NA	intron (NM_001367611, intron 1 of 20)	intron (NM_001367611, intron 1 of 20)	1630	NM_001351684	55184		NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84	double zinc ribbon and ankyrin repeat domains 1	protein-coding
220916	chr8	106845951	106846050	+	0	NA	Intergenic	Intergenic	-75756	NM_139166	137735		NM_139166	ENSG00000174429	ABRA	STARS	actin binding Rho activating protein	protein-coding
206596	chr7	35731621	35731880	+	0	NA	Intergenic	L2a|LINE|L2	15313	NR_108082	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
104898	chr17	81890751	81892950	+	0	NA	promoter-TSS (NM_001289420)	promoter-TSS (NM_001289420)	-77	NM_001002249	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
114064	chr19	11086951	11087300	+	0	NA	Intergenic	Intergenic	-2338	NM_001195799	3949		NM_000527	ENSG00000130164	LDLR	FH|FHC|FHCL1|LDLCQ2	low density lipoprotein receptor	protein-coding
10499	chr1	66503951	66504130	+	0	NA	Intergenic	Intergenic	-29321	NM_001376535	84251		NM_032291	ENSG00000118473	SGIP1	-	SH3GL interacting endocytic adaptor 1	protein-coding
234600	chrX	19795051	19795630	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	4433	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
140194	chr2	231678901	231679980	+	0	NA	Intergenic	Intergenic	-29085	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
139242	chr2	219358871	219359050	+	0	NA	Intergenic	CpG	-25783	NM_001007089	389075		NM_001007089	ENSG00000182698	RESP18	-	regulated endocrine specific protein 18	protein-coding
231080	chr9	129735401	129736000	+	0	NA	Intergenic	Intergenic	-16994	NR_132102	101929437		NR_132102	ENSG00000236024	PRRX2-AS1	-	PRRX2 antisense RNA 1	ncRNA
36167	chr11	3160101	3161230	+	0	NA	intron (NM_145638, intron 1 of 20)	CpG	4645	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
134106	chr2	133844271	133844500	+	0	NA	Intergenic	Intergenic	-275550	NM_001371457	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
225558	chr9	35908021	35908950	+	0	NA	Intergenic	Intergenic	-1005	NM_001348107	158376		NM_001348107	ENSG00000235387	SPAAR	LINC00961|SPAR	small regulatory polypeptide of amino acid response	protein-coding
95	chr1	402651	402850	+	0	NA	Intergenic	Intergenic	48928	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
167002	chr3	125968771	125969880	+	0	NA	5' UTR (NM_001012337, exon 1 of 6)	5' UTR (NM_001012337, exon 1 of 6)	147	NM_001308313	152015		NM_001012337	ENSG00000114547	ROPN1B	-	rhophilin associated tail protein 1B	protein-coding
214267	chr7	148979171	148979330	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-4505	NR_004392	6085		NR_004392	ENSG00000202354	RNY3	HY3|Y3	RNA, Ro60-associated Y3	ncRNA
173163	chr4	6688521	6689800	+	0	NA	intron (NR_147207, intron 2 of 2)	intron (NR_147207, intron 2 of 2)	1359	NR_147207	339988		NR_147207	ENSG00000246526	LINC02481	LINC002481	long intergenic non-protein coding RNA 2481	ncRNA
148403	chr20	63938351	63939850	+	0	NA	TTS (NM_001353476)	TTS (NM_001353476)	2444	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
14572	chr1	145156971	145157330	+	0	NA	Intergenic	Intergenic	10457	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
93943	chr17	21319551	21320430	+	0	NA	Intergenic	Intergenic	31954	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
145488	chr20	43925121	43925630	+	0	NA	intron (NM_001098796, intron 1 of 8)	intron (NM_001098796, intron 1 of 8)	9245	NM_001098796	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
12141	chr1	100079751	100080050	+	0	NA	intron (NM_033055, intron 10 of 11)	AluJb|SINE|Alu	41805	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
20414	chr1	198193821	198194080	+	0	NA	intron (NM_133494, intron 1 of 9)	L1P3|LINE|L1	36952	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
67201	chr14	68924301	68925100	+	0	NA	intron (NM_001130004, intron 2 of 21)	intron (NM_001130004, intron 2 of 21)	54602	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
95374	chr17	35877201	35877400	+	0	NA	intron (NM_001278736, intron 2 of 3)	AluSz6|SINE|Alu	3060	NM_001278736	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
85669	chr16	56317951	56318570	+	0	NA	intron (NM_020988, intron 3 of 8)	intron (NM_020988, intron 3 of 8)	72740	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
81661	chr16	10983121	10983380	+	0	NA	intron (NM_001243403, intron 9 of 20)	MIR3|SINE|MIR	38686	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
231201	chr9	129941471	129941830	+	0	NA	intron (NM_001363755, intron 6 of 15)	AluJb|SINE|Alu	72045	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
212563	chr7	128885701	128885900	+	0	NA	intron (NM_001366122, intron 26 of 39)	MIR|SINE|MIR	19470	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
180405	chr5	10351401	10351800	+	0	NA	Intergenic	Intergenic	-2095	NM_005885	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
196990	chr6	53290401	53291550	+	0	NA	intron (NM_001242828, intron 3 of 8)	intron (NM_001242828, intron 3 of 8)	13982	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
37837	chr11	33323721	33323980	+	0	NA	intron (NM_001048200, intron 2 of 15)	intron (NM_001048200, intron 2 of 15)	-52258	NM_012194	25758		NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549 like	protein-coding
218499	chr8	52712851	52713600	+	0	NA	intron (NM_001083617, intron 1 of 23)	intron (NM_001083617, intron 1 of 23)	1210	NM_014781	9821		NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
109194	chr19	404001	404330	+	0	NA	Intergenic	Intergenic	4982	NM_001136263	126567		NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium dependent domain containing 4C	protein-coding
59392	chr13	24997421	24997700	+	0	NA	Intergenic	Intergenic	-29091	NR_026730	646405		NM_001126062		TPTE2P1	-	TPTE2 pseudogene 1	pseudo
5418	chr1	25548321	25548580	+	0	NA	intron (NM_015627, intron 1 of 8)	AluSx1|SINE|Alu	4844	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
7471	chr1	33112021	33112280	+	0	NA	intron (NR_146648, intron 10 of 11)	L1ME3E|LINE|L1	29972	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
12848	chr1	110068871	110069760	+	0	NA	intron (NM_006492, intron 1 of 3)	CpG	1357	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
145615	chr20	44650701	44653180	+	0	NA	promoter-TSS (NM_000022)	promoter-TSS (NM_000022)	-182	NM_001322051	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
185586	chr5	131395121	131395480	+	0	NA	TTS (NM_001375635)	TTS (NM_001375635)	131247	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
195045	chr6	35490021	35490630	+	0	NA	intron (NM_003214, intron 1 of 12)	intron (NM_003214, intron 1 of 12)	6754	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
128728	chr2	61870121	61870380	+	0	NA	intron (NM_006430, intron 12 of 13)	AluSc8|SINE|Alu	-16190	NM_032180	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
29531	chr10	70885671	70886050	+	0	NA	exon (NM_000281, exon 2 of 4)	exon (NM_000281, exon 2 of 4)	2021	NM_001289797	5092		NM_000281	ENSG00000166228	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase 1	protein-coding
194443	chr6	33165851	33165950	+	0	NA	intron (NM_080680, intron 62 of 65).6	intron (NM_080680, intron 62 of 65).6	22576	NR_138084	414768		NR_138084		HCG24	-	HLA complex group 24	ncRNA
126044	chr2	25375301	25375700	+	0	NA	Intergenic	Intergenic	-32910	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
64437	chr14	24200471	24201130	+	0	NA	Intergenic	AluYc3|SINE|Alu	-4896	NM_174944	283629		NM_174944	ENSG00000139908	TSSK4	C14orf20|STK22E|TSK-4|TSK4|TSSK5	testis specific serine kinase 4	protein-coding
39698	chr11	61741001	61741400	+	0	NA	exon (NM_006133, exon 19 of 20)	exon (NM_006133, exon 19 of 20)	-11436	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
153075	chr22	23313121	23313800	+	0	NA	intron (NM_021574, intron 19 of 21)	intron (NM_021574, intron 19 of 21)	-13156	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
126922	chr2	32865571	32865730	+	0	NA	intron (NR_027098, intron 2 of 5)	intron (NR_027098, intron 2 of 5)	40217	NR_027098	285045		NR_027098	ENSG00000230876	LINC00486	-	long intergenic non-protein coding RNA 486	ncRNA
185807	chr5	132434571	132435280	+	0	NA	intron (NR_161242, intron 2 of 3)	LTR16B1|LTR|ERVL	23996	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
38431	chr11	45110471	45110950	+	0	NA	intron (NM_001359633, intron 2 of 7)	MER91B|DNA|hAT-Tip100	16551	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
34260	chr10	131841551	131841850	+	0	NA	Intergenic	Intergenic	-51501	NR_038365	399827		NM_001001677	ENSG00000189275	LINC01164	-	long intergenic non-protein coding RNA 1164	ncRNA
88026	chr16	81079771	81079930	+	0	NA	Intergenic	Intergenic	-2583	NM_001100873	123775		NM_152337	ENSG00000166455	C16orf46	-	chromosome 16 open reading frame 46	protein-coding
58466	chr12	132136951	132137250	+	0	NA	3' UTR (NM_175066, exon 15 of 15)	3' UTR (NM_175066, exon 15 of 15)	7219	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
155786	chr22	39290551	39291450	+	0	NA	Intergenic	(AGGCCCC)n|Simple_repeat|Simple_repeat	22911	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
1658	chr1	3880951	3881650	+	0	NA	intron (NR_135150, intron 7 of 7)	intron (NR_135150, intron 7 of 7)	18972	NM_207356	339448		NM_207356	ENSG00000198912	C1orf174	-	chromosome 1 open reading frame 174	protein-coding
133682	chr2	127083221	127083480	+	0	NA	intron (NM_139345, intron 1 of 15)	AluJr|SINE|Alu	1200	NM_001320642	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
92115	chr17	7588021	7588280	+	0	NA	TTS (NM_001330073)	TTS (NM_001330073)	1944	NM_006942	6665		NM_006942	ENSG00000129194	SOX15	SOX20|SOX26|SOX27	SRY-box transcription factor 15	protein-coding
74543	chr15	60514421	60514680	+	0	NA	intron (NM_134260, intron 5 of 11)	intron (NM_134260, intron 5 of 11)	35372	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
85003	chr16	31487071	31488630	+	0	NA	intron (NR_130783, intron 7 of 11)	CpG-9581	4727	NR_130783	6524		NM_003041	ENSG00000140675	SLC5A2	SGLT2	solute carrier family 5 member 2	protein-coding
109929	chr19	1311621	1311880	+	0	NA	Intergenic	Intergenic	25877	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
108239	chr18	63210521	63212200	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	108409	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
83551	chr16	28081721	28082380	+	0	NA	Intergenic	AluSz|SINE|Alu	-18336	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
68784	chr14	91193621	91194750	+	0	NA	intron (NM_001358311, intron 9 of 13)	MIRb|SINE|MIR	50519	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
238237	chrX	141176571	141177430	+	0	NA	exon (NM_012317, exon 1 of 1)	exon (NM_012317, exon 1 of 1)	129	NM_012317	23641		NM_012317	ENSG00000182195	LDOC1	BCUR1|Mar7|Mart7|RTL7|SIRH7	LDOC1 regulator of NFKB signaling	protein-coding
99577	chr17	50482271	50483030	+	0	NA	exon (NM_018346, exon 5 of 9)	exon (NM_018346, exon 5 of 9)	3790	NM_018346	55316		NM_018346	ENSG00000136444	RSAD1	HemW	radical S-adenosyl methionine domain containing 1	protein-coding
34295	chr10	131972421	131974480	+	0	NA	intron (NM_004052, intron 2 of 5)	intron (NM_004052, intron 2 of 5)	8563	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
182409	chr5	61342021	61342730	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	10117	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
98354	chr17	46343101	46343650	+	0	NA	intron (NM_001039083, intron 3 of 3).5	intron (NM_001039083, intron 3 of 3).5	18391	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
60055	chr13	33015201	33015430	+	0	NA	Intergenic	Intergenic	-1108	NM_004795	9365		NM_004795	ENSG00000133116	KL	HFTC3|KLA	klotho	protein-coding
112637	chr19	6794471	6794630	+	0	NA	intron (NM_005428, intron 1 of 26)	L2a|LINE|L2	21842	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
15967	chr1	151891551	151892400	+	0	NA	intron (NM_053055, intron 2 of 5)	FLAM_C|SINE|Alu	17536	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
56172	chr12	111414771	111415480	+	0	NA	intron (NM_005475, intron 1 of 7)	intron (NM_005475, intron 1 of 7)	9202	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
201033	chr6	141846421	141846830	+	0	NA	Intergenic	Intergenic	-286534	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
229777	chr9	125229451	125229780	+	0	NA	intron (NM_001174153, intron 6 of 7)	intron (NM_001174153, intron 6 of 7)	11728	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
138034	chr2	201290071	201290230	+	0	NA	intron (NR_110620, intron 11 of 13)	L1MC2|LINE|L1	29614	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
177259	chr4	109422201	109422800	+	0	NA	Intergenic	Intergenic	-11215	NM_001042734	10427		NM_006323	ENSG00000138802	SEC24B	SEC24	SEC24 homolog B, COPII coat complex component	protein-coding
165874	chr3	106076751	106076850	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-207399	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
69010	chr14	91501051	91502700	+	0	NA	intron (NR_158976, intron 2 of 16)	AluY|SINE|Alu	8435	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
191802	chr6	14323201	14323600	+	0	NA	Intergenic	Intergenic	-37946	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
43254	chr11	75532171	75532850	+	0	NA	Intergenic	Intergenic	-6569	NM_030792	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
123501	chr19	54205171	54206100	+	0	NA	intron (NM_001321706, intron 3 of 3).8	intron (NM_001321706, intron 3 of 3).8	4777	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
138301	chr2	203725921	203726180	+	0	NA	intron (NM_001243078, intron 1 of 2)	AluSz|SINE|Alu	19411	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
113554	chr19	10238221	10238680	+	0	NA	Intergenic	Intergenic	-7119	NM_004230	9294		NM_004230	ENSG00000267534	S1PR2	AGR16|DFNB68|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding
210131	chr7	98210651	98211480	+	0	NA	promoter-TSS (NM_177455)	promoter-TSS (NM_177455)	-374	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
21515	chr1	205773971	205774440	+	0	NA	intron (NM_001135664, intron 1 of 4)	intron (NM_001135664, intron 1 of 4)	1277	NM_001135663	8934		NM_003929	ENSG00000117280	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
226029	chr9	42470571	42470730	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	98699	NR_126050	103908605		NR_126050		FAM88E	-	family with sequence similarity 88 member E	ncRNA
230366	chr9	128067701	128070430	+	0	NA	intron (NM_001006641, intron 1 of 9)	intron (NM_001006641, intron 1 of 9)	865	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
166123	chr3	111311671	111312330	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-230197	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
19528	chr1	176205371	176205780	+	0	NA	intron (NM_022457, intron 1 of 19)	intron (NM_022457, intron 1 of 19)	1669	NM_001001740	64326		NM_022457	ENSG00000143207	COP1	CFAP78|FAP78|RFWD2|RNF200	COP1 E3 ubiquitin ligase	protein-coding
104866	chr17	81853551	81854250	+	0	NA	intron (NM_000918, intron 4 of 10)	intron (NM_000918, intron 4 of 10)	6635	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
203712	chr7	1057171	1057330	+	0	NA	intron (NM_001303474, intron 2 of 2)	intron (NM_001303474, intron 2 of 2)	1880	NM_001303474	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
140929	chr2	237724471	237724630	+	0	NA	intron (NM_001137550, intron 7 of 23)	intron (NM_001137550, intron 7 of 23)	32345	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
43432	chr11	77635221	77635630	+	0	NA	intron (NM_001311199, intron 1 of 6)	AluSx|SINE|Alu	2369	NM_001311200	1207		NM_001293	ENSG00000074201	CLNS1A	CLCI|CLNS1B|ICln	chloride nucleotide-sensitive channel 1A	protein-coding
206568	chr7	35665021	35665430	+	0	NA	intron (NM_022373, intron 5 of 8)	L1PA5|LINE|L1	29910	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
237817	chrX	129960001	129960300	+	0	NA	Intergenic	MIRc|SINE|MIR	-20829	NM_001184772	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
136772	chr2	181454851	181455650	+	0	NA	Intergenic	Intergenic	-1642	NM_001316312	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
107819	chr18	54086421	54086700	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	135852	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
209022	chr7	74417171	74417730	+	0	NA	Intergenic	Intergenic	-36456	NM_001199207	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
64955	chr14	35948171	35948330	+	0	NA	Intergenic	Intergenic	121912	NM_032352	84312		NM_032352	ENSG00000100916	BRMS1L	BRMS1|p40	BRMS1 like transcriptional repressor	protein-coding
96825	chr17	41959721	41960130	+	0	NA	intron (NM_031421, intron 10 of 11)	intron (NM_031421, intron 10 of 11)	-6870	NM_033133	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
54103	chr12	76119721	76120200	+	0	NA	Intergenic	Intergenic	-35275	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
8061	chr1	38891851	38892030	+	0	NA	intron (NM_017821, intron 6 of 7)	intron (NM_017821, intron 6 of 7)	-10314	NR_037634	100527950		NR_037633		GJA9-MYCBP	Cx58|Cx59|GJA10|GJA9	GJA9-MYCBP readthrough	ncRNA
75110	chr15	64496121	64496380	+	0	NA	intron (NM_015042, intron 1 of 9)	intron (NM_015042, intron 1 of 9)	35672	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
55780	chr12	108616751	108617800	+	0	NA	Intergenic	MIRb|SINE|MIR	14806	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
186903	chr5	139578551	139579050	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	17461	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
228005	chr9	95517751	95517930	+	0	NA	promoter-TSS (NM_001083602)	promoter-TSS (NM_001083602)	-869	NM_001083602	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
22472	chr1	221711001	221711530	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	25635	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
79352	chr16	603901	604100	+	0	NA	intron (NM_001172664, intron 2 of 6)	L1ME2|LINE|L1	13923	NM_001172665	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
91715	chr17	6575151	6575680	+	0	NA	Intergenic	Intergenic	-18860	NM_001165966	83394		NM_031220	ENSG00000091622	PITPNM3	ACKR6|CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
66517	chr14	61727871	61728030	+	0	NA	intron (NM_181054, intron 6 of 13)	AluSx1|SINE|Alu	21139	NR_045406	100750247		NR_045406		HIF1A-AS2	3'aHIF-1A|aHIF	HIF1A antisense RNA 2	ncRNA
224488	chr9	16870221	16870880	+	0	NA	intron (NM_001317940, intron 1 of 5)	CpG	120	NM_001317940	54796		NM_017637	ENSG00000173068	BNC2	BSN2|LUTO|bn2	basonuclin zinc finger protein 2	protein-coding
141343	chr2	240585921	240588050	+	0	NA	promoter-TSS (NR_103792)	promoter-TSS (NR_103792)	251	NM_023085	11132		NM_021251	ENSG00000142330	CAPN10	CANP10|NIDDM1	calpain 10	protein-coding
141227	chr2	239476151	239476450	+	0	NA	Intergenic	Intergenic	74552	NR_135577	101928111		NR_135575	ENSG00000222020	HDAC4-AS1	-	HDAC4 antisense RNA 1	ncRNA
190804	chr6	1380551	1380850	+	0	NA	Intergenic	Intergenic	-8876	NM_001452	2295		NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
155582	chr22	38747701	38748050	+	0	NA	intron (NM_001199580, intron 8 of 18)	AluJb|SINE|Alu	7591	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
130155	chr2	75200301	75200750	+	0	NA	Intergenic	CpG	-1005	NM_015727	6869		NM_001058	ENSG00000115353	TACR1	NK1R|NKIR|SPR|TAC1R	tachykinin receptor 1	protein-coding
28008	chr10	43165401	43166400	+	0	NA	intron (NM_001319654, intron 4 of 5)	AluSx|SINE|Alu	11003	NM_001319656	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
87041	chr16	68283621	68284250	+	0	NA	intron (NM_001076785, intron 4 of 11)	intron (NM_001076785, intron 4 of 11)	19409	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
91674	chr17	5562521	5563330	+	0	NA	intron (NM_014922, intron 3 of 15)	L1PA13|LINE|L1	21584	NM_001033053	22861		NM_014922	ENSG00000091592	NLRP1	AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|JRRP|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
149378	chr21	30979101	30979300	+	0	NA	Intergenic	Intergenic	59276	NM_001099219	728299		NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
186653	chr5	138570671	138571050	+	0	NA	intron (NM_004134, intron 4 of 16)	intron (NM_004134, intron 4 of 16)	4541	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
36879	chr11	10544471	10545050	+	0	NA	intron (NR_034094, intron 1 of 2)	MER52A|LTR|ERV1	3524	NR_046375	100129827		NR_034093	ENSG00000177112	IRAG1-AS1	MRVI1-AS1	IRAG1 antisense RNA 1	ncRNA
108148	chr18	62553851	62554350	+	0	NA	intron (NM_017742, intron 5 of 13)	intron (NM_017742, intron 5 of 13)	31075	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
224615	chr9	20508251	20508750	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	-6158	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
81369	chr16	4936221	4936580	+	0	NA	intron (NM_002705, intron 1 of 21)	CpG	748	NM_002705	5493		NM_002705	ENSG00000118898	PPL	-	periplakin	protein-coding
85361	chr16	50263901	50264430	+	0	NA	Intergenic	L1ME3|LINE|L1	-2386	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
193910	chr6	31629251	31629350	+	0	NA	exon (NM_080686, exon 13 of 31).2	exon (NM_080686, exon 13 of 31).2	-4487	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
218477	chr8	51870871	51871030	+	0	NA	intron (NM_052937, intron 1 of 5)	MIRb|SINE|MIR	28086	NM_001363193	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
239174	chrY	12423501	12423900	+	0	NA	Intergenic	Intergenic	-2110	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
78300	chr15	90906501	90906700	+	0	NA	intron (NR_135503, intron 6 of 22)	intron (NR_135503, intron 6 of 22)	2410	NR_135504	4122		NM_006122	ENSG00000196547	MAN2A2	MANA2X|alpha-MIIx	mannosidase alpha class 2A member 2	protein-coding
47252	chr12	1203901	1204100	+	0	NA	intron (NM_178039, intron 11 of 17)	intron (NM_178039, intron 11 of 17)	176252	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
207353	chr7	44078721	44078980	+	0	NA	intron (NR_156112, intron 4 of 10)	intron (NR_156112, intron 4 of 10)	3680	NM_001284330	27434		NM_013284	ENSG00000122678	POLM	Pol Mu|Tdt-N	DNA polymerase mu	protein-coding
179197	chr4	173360751	173360950	+	0	NA	Intergenic	L1M7|LINE|L1	-10104	NM_003864	8819		NM_003864	ENSG00000164105	SAP30	-	Sin3A associated protein 30	protein-coding
181175	chr5	39072571	39073800	+	0	NA	intron (NM_001285439, intron 2 of 38)	intron (NM_001285439, intron 2 of 38)	1214	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
184456	chr5	100536721	100537000	+	0	NA	intron (NM_198507, intron 1 of 2)	intron (NM_198507, intron 1 of 2)	1486	NM_198507	345757		NM_198507	ENSG00000174132	FAM174A	HGS_RE408|NS5ATP6|TMEM157|UNQ1912	family with sequence similarity 174 member A	protein-coding
92476	chr17	8744301	8745500	+	0	NA	promoter-TSS (NM_001158261)	promoter-TSS (NM_001158261)	-64	NM_001158261	146849		NM_144681	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
208998	chr7	74256651	74257280	+	0	NA	Intergenic	Intergenic	-2507	NM_002914	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
97480	chr17	43780551	43780850	+	0	NA	intron (NM_001353400, intron 1 of 4)	intron (NM_001353400, intron 1 of 4)	265	NM_001136483	284067		NM_001136483	ENSG00000231256	CFAP97D1	C17orf105	CFAP97 domain containing 1	protein-coding
20889	chr1	202146951	202148080	+	0	NA	non-coding (NR_037664, exon 9 of 9)	non-coding (NR_037664, exon 9 of 9)	-2772	NM_001256129	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
176738	chr4	101349521	101350580	+	0	NA	Intergenic	Intergenic	2273	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
100378	chr17	60134251	60135000	+	0	NA	Intergenic	Intergenic	-15348	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
143096	chr20	23340421	23340750	+	0	NA	Intergenic	Intergenic	-10206	NM_013248	29107		NM_013248	ENSG00000132661	NXT1	MTR2|P15	nuclear transport factor 2 like export factor 1	protein-coding
23497	chr1	228664051	228664830	+	0	NA	intron (NR_037962, intron 1 of 2)	Cheshire|DNA|hAT-Charlie	-18282	NR_023374	100169763		NR_023374	ENSG00000199270	RNA5S12	RN5S12	RNA, 5S ribosomal 12	rRNA
234878	chrX	30568071	30568380	+	0	NA	intron (NM_025159, intron 2 of 2)	AluSx1|SINE|Alu	9541	NM_025159	80231		NM_025159	ENSG00000120280	TASL	CXorf21	TLR adaptor interacting with endolysosomal SLC15A4	protein-coding
203516	chr7	711271	711630	+	0	NA	exon (NM_002735, exon 2 of 11)	exon (NM_002735, exon 2 of 11)	1074	NM_002735	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
2391	chr1	9490901	9491430	+	0	NA	Intergenic	Intergenic	-48300	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
163987	chr3	53114871	53115100	+	0	NA	intron (NM_052859, intron 6 of 12)	intron (NM_052859, intron 6 of 12)	15450	NM_052859	91869		NM_052859	ENSG00000163933	RFT1	CDG1N	RFT1 homolog	protein-coding
144558	chr20	35739271	35740500	+	0	NA	intron (NM_184234, intron 2 of 16)	intron (NM_184234, intron 2 of 16)	2375	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
138850	chr2	216560151	216560250	+	0	NA	Intergenic	Intergenic	46738	NR_110392	101928232		NR_110392		LINC01280	-	long intergenic non-protein coding RNA 1280	ncRNA
136576	chr2	177908271	177908430	+	0	NA	intron (NM_016953, intron 2 of 19)	intron (NM_016953, intron 2 of 19)	14487	NM_001077358	50940		NM_016953	ENSG00000128655	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
187144	chr5	140545821	140546300	+	0	NA	intron (NM_020690, intron 34 of 35)	MER5A1|DNA|hAT-Charlie	-1602	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
203831	chr7	1423151	1423450	+	0	NA	Intergenic	Intergenic	36170	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
96070	chr17	39597901	39598450	+	0	NA	Intergenic	Intergenic	9745	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
54735	chr12	93684551	93684930	+	0	NA	intron (NM_001320100, intron 2 of 2)	L2a|LINE|L2	5971	NM_001330126	8738		NM_003805	ENSG00000169372	CRADD	MRT34|RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding
47434	chr12	3285221	3285680	+	0	NA	3' UTR (NM_001168320, exon 8 of 8)	3' UTR (NM_001168320, exon 8 of 8)	80672	NR_148995	100128253		NR_148995		LOC100128253	-	uncharacterized LOC100128253	ncRNA
29777	chr10	72269471	72269830	+	0	NA	Intergenic	Intergenic	-4274	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
186754	chr5	139318171	139318550	+	0	NA	intron (NM_199189, intron 10 of 17)	AluSx1|SINE|Alu	-23472	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
154627	chr22	36316201	36317230	+	0	NA	intron (NM_002473, intron 11 of 40)	L1ME4c|LINE|L1	-29808	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
119428	chr19	40347521	40349550	+	0	NA	promoter-TSS (NM_012268)	promoter-TSS (NM_012268)	-8	NM_001256440	126526		NM_178830	ENSG00000160392	C19orf47	-	chromosome 19 open reading frame 47	protein-coding
45163	chr11	117208671	117209230	+	0	NA	exon (NM_004716, exon 13 of 17)	exon (NM_004716, exon 13 of 17)	-7036	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
198717	chr6	108169421	108170400	+	0	NA	intron (NM_001286102, intron 1 of 8)	CpG-23912	1887	NM_001286102	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
6466	chr1	28281421	28281780	+	0	NA	3' UTR (NM_031459, exon 10 of 10)	3' UTR (NM_031459, exon 10 of 10)	22082	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
6381	chr1	27883801	27884600	+	0	NA	intron (NM_001105556, intron 4 of 5)	MIR|SINE|MIR	11656	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
229799	chr9	125332521	125332980	+	0	NA	intron (NR_148733, intron 14 of 26)	L1ME4c|LINE|L1	70924	NM_001354295	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
50824	chr12	49097951	49099900	+	0	NA	intron (NM_001352161, intron 15 of 16)	AluJr|SINE|Alu	-4124	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
131441	chr2	96316901	96317300	+	0	NA	Intergenic	Intergenic	-8217	NM_001008949	150771		NM_178495	ENSG00000198885	ITPRIPL1	D1B|KIAA1754L	ITPRIP like 1	protein-coding
11978	chr1	94429671	94429830	+	0	NA	intron (NM_001122674, intron 1 of 8)	THE1B-int|LTR|ERVL-MaLR	11361	NM_002858	5825		NM_002858	ENSG00000117528	ABCD3	ABC43|CBAS5|PMP70|PXMP1|ZWS2	ATP binding cassette subfamily D member 3	protein-coding
100901	chr17	64406701	64407280	+	0	NA	Intergenic	MER66B|LTR|ERV1	-16130	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
143068	chr20	21516651	21516950	+	0	NA	Intergenic	Intergenic	-2736	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
593	chr1	1291671	1292500	+	0	NA	TTS (NM_030649)	TTS (NM_030649)	4085	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
156554	chr22	41440321	41440830	+	0	NA	intron (NM_016272, intron 1 of 1)	AluSz|SINE|Alu	6226	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
77678	chr15	85617221	85617480	+	0	NA	intron (NM_007200, intron 8 of 36)	AluSc|SINE|Alu	-2600	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
137057	chr2	190893001	190894050	+	0	NA	intron (NM_014905, intron 1 of 17)	MIR|SINE|MIR	12704	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
207059	chr7	39735821	39736450	+	0	NA	intron (NR_026999, intron 1 of 11)	intron (NR_026999, intron 1 of 11)	2567	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
33012	chr10	110618351	110618450	+	0	NA	Intergenic	Intergenic	-25936	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
208966	chr7	74193201	74193530	+	0	NA	intron (NM_022170, intron 5 of 6)	Tigger17a|DNA|TcMar-Tigger	2167	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
171233	chr3	195781101	195781500	+	0	NA	exon (NM_001322468, exon 12 of 42)	exon (NM_001322468, exon 12 of 42)	30629	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
174185	chr4	36325121	36325900	+	0	NA	intron (NR_165630, intron 9 of 10)	L2a|LINE|L2	43894	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
60238	chr13	40566101	40566450	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	-85269	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
30107	chr10	73979871	73980030	+	0	NA	Intergenic	Intergenic	-18166	NM_014000	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
162494	chr3	48569301	48569500	+	0	NA	exon (NM_000094, exon 103 of 119)	exon (NM_000094, exon 103 of 119)	-5619	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
206792	chr7	36784821	36785750	+	0	NA	Intergenic	MER34C2|LTR|ERV1	-60736	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
115676	chr19	16182351	16183450	+	0	NA	Intergenic	Intergenic	-2510	NM_014077	26017		NM_014077	ENSG00000105058	FAM32A	OTAG-12|OTAG12	family with sequence similarity 32 member A	protein-coding
178932	chr4	158870701	158871300	+	0	NA	intron (NM_001366843, intron 15 of 17)	intron (NM_001366843, intron 15 of 17)	65161	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
213306	chr7	135158451	135159100	+	0	NA	intron (NM_018295, intron 1 of 1)	L1M2a1|LINE|L1	10699	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
191787	chr6	14137171	14137530	+	0	NA	TTS (NM_004233)	TTS (NM_004233)	19578	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
215170	chr7	155661201	155661400	+	0	NA	intron (NM_053043, intron 1 of 17)	AluSc5|SINE|Alu	16639	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
49267	chr12	19484271	19484430	+	0	NA	intron (NM_153207, intron 3 of 7)	AluSg|SINE|Alu	43751	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
99731	chr17	50915471	50915630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-47572	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
179222	chr4	173528271	173528630	+	0	NA	promoter-TSS (NR_136197)	promoter-TSS (NR_136197)	-150	NR_136197	79804		NR_003679	ENSG00000237125	HAND2-AS1	DEIN|NBLA00301|UPH	HAND2 antisense RNA 1	ncRNA
100651	chr17	63697241	63698500	+	0	NA	3' UTR (NM_030576, exon 5 of 5)	3' UTR (NM_030576, exon 5 of 5)	2255	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
60989	chr13	46751671	46752430	+	0	NA	3' UTR (NM_001164213, exon 19 of 19)	3' UTR (NM_001164213, exon 19 of 19)	45111	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
161567	chr3	42796071	42796230	+	0	NA	intron (NM_001099669, intron 1 of 3)	intron (NM_001099669, intron 1 of 3)	8292	NM_001099668	25994		NM_014056	ENSG00000181061	HIGD1A	HIG1|RCF1a	HIG1 hypoxia inducible domain family member 1A	protein-coding
10563	chr1	67211521	67212650	+	0	NA	intron (NM_144701, intron 6 of 10)	intron (NM_144701, intron 6 of 10)	45631	NM_144701	149233		NM_144701	ENSG00000162594	IL23R	PSORS7	interleukin 23 receptor	protein-coding
91927	chr17	7325201	7325700	+	0	NA	exon (NM_001005408, exon 8 of 29)	exon (NM_001005408, exon 8 of 29)	3885	NM_032442	84461		NM_032442	ENSG00000215041	NEURL4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding
107952	chr18	58272871	58273030	+	0	NA	intron (NM_001243960, intron 5 of 28)	intron (NM_001243960, intron 5 of 28)	51379	NM_001144966	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
89995	chr16	89872701	89874950	+	0	NA	exon (NM_014972, exon 1 of 18)	exon (NM_014972, exon 1 of 18)	233	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
159650	chr3	15328101	15328580	+	0	NA	intron (NM_001018009, intron 2 of 8)	L2a|LINE|L2	4246	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
15749	chr1	151142421	151142780	+	0	NA	exon (NM_030913, exon 3 of 19)	exon (NM_030913, exon 3 of 19)	4031	NM_030913	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
11741	chr1	91950371	91950530	+	0	NA	5' UTR (NM_001242810, exon 2 of 19)	5' UTR (NM_001242810, exon 2 of 19)	1079	NM_001242805	676		NM_001726	ENSG00000137948	BRDT	BRD6|CT9|SPGF21	bromodomain testis associated	protein-coding
168780	chr3	151383971	151384130	+	0	NA	intron (NM_053002, intron 32 of 42)	intron (NM_053002, intron 32 of 42)	703	NM_022788	64805		NM_022788	ENSG00000169313	P2RY12	ADPG-R|BDPLT8|HORK3|P2T(AC)|P2Y(12)R|P2Y(AC)|P2Y(ADP)|P2Y(cyc)|P2Y12|SP1999	purinergic receptor P2Y12	protein-coding
14776	chr1	146049151	146050000	+	0	NA	Intergenic	CpG	2669	NR_104085	101954276		NR_104085	ENSG00000201558	RNVU1-6	RNU1-99|vU1.6	RNA, variant U1 small nuclear 6	snRNA
116075	chr19	17240071	17240300	+	0	NA	intron (NM_005234, intron 2 of 3)	intron (NM_005234, intron 2 of 3)	5157	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
62360	chr13	99214051	99214730	+	0	NA	intron (NR_026644, intron 1 of 8)	HAL1ME|LINE|L1	13536	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
149901	chr21	36126721	36126980	+	0	NA	promoter-TSS (NR_040084)	promoter-TSS (NR_040084)	-210	NR_040084	100133286		NR_040084	ENSG00000230212	CBR1-AS1	-	CBR1 antisense RNA 1	ncRNA
198560	chr6	106974101	106974900	+	0	NA	promoter-TSS (NM_001291739)	promoter-TSS (NM_001291739)	229	NM_001359084	100133941		NM_013230	ENSG00000272398	CD24	CD24A	CD24 molecule	protein-coding
141049	chr2	238242901	238243700	+	0	NA	TTS (NM_022817)	TTS (NM_022817)	-3262	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
84507	chr16	30506621	30506880	+	0	NA	exon (NM_001114380, exon 19 of 29)	exon (NM_001114380, exon 19 of 29)	2831	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
191619	chr6	12169451	12169600	+	0	NA	Intergenic	Intergenic	-120836	NM_001955	1906		NM_001955	ENSG00000078401	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
65243	chr14	49892271	49894080	+	0	NA	promoter-TSS (NM_001663)	promoter-TSS (NM_001663)	93	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
239402	chrY	23145151	23145250	+	0	NA	intron (NM_001005375, intron 18 of 22).2	L1PA2|LINE|L1	53892	NM_004081	1617		NM_004081	ENSG00000188120	DAZ1	DAZ|SPGY	deleted in azoospermia 1	protein-coding
202157	chr6	155218951	155219450	+	0	NA	intron (NM_001010927, intron 1 of 12)	intron (NM_001010927, intron 1 of 12)	2234	NM_001010927	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
132159	chr2	101755821	101756080	+	0	NA	intron (NM_001384572, intron 1 of 29)	AluY|SINE|Alu	57685	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
75047	chr15	64157501	64158050	+	0	NA	TTS (NM_024798)	TTS (NM_024798)	5247	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
182224	chr5	56861101	56861480	+	0	NA	intron (NM_005921, intron 3 of 19)	Charlie1a|DNA|hAT-Charlie	45741	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
77367	chr15	82820471	82820830	+	0	NA	intron (NM_001080435, intron 5 of 9)	AluSx1|SINE|Alu	11022	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
89960	chr16	89784101	89784940	+	0	NA	intron (NM_001286167, intron 15 of 42)	intron (NM_001286167, intron 15 of 42)	32127	NM_001286167	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
161710	chr3	43692501	43693650	+	0	NA	intron (NM_001365649, intron 1 of 6)	intron (NM_001365649, intron 1 of 6)	-1481	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
107602	chr18	48916001	48916200	+	0	NA	Intergenic	Intergenic	26707	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
159900	chr3	16902701	16903080	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	17935	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
44423	chr11	104225101	104225300	+	0	NA	Intergenic	Intergenic	-61053	NM_025208	80310		NM_025208	ENSG00000170962	PDGFD	IEGF|MSTP036|SCDGF-B|SCDGFB	platelet derived growth factor D	protein-coding
62395	chr13	99276501	99277200	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-18422	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
44375	chr11	102559701	102560130	+	0	NA	Intergenic	Intergenic	-29168	NM_002423	4316		NM_002423	ENSG00000137673	MMP7	MMP-7|MPSL1|PUMP-1	matrix metallopeptidase 7	protein-coding
64089	chr14	22596801	22597000	+	0	NA	Intergenic	Intergenic	-1338	NM_022060	63874		NM_022060	ENSG00000100439	ABHD4	ABH4	abhydrolase domain containing 4, N-acyl phospholipase B	protein-coding
177883	chr4	128814751	128815900	+	0	NA	intron (NM_001287443, intron 1 of 10)	AluY|SINE|Alu	3481	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
141192	chr2	239303421	239304680	+	0	NA	intron (NM_006037, intron 2 of 26)	MIR|SINE|MIR	-1412	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
69147	chr14	92556701	92557530	+	0	NA	intron (NM_024832, intron 2 of 9)	intron (NM_024832, intron 2 of 9)	-19119	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
126407	chr2	27650501	27650900	+	0	NA	TTS (NM_001282732)	TTS (NM_001282732)	-12771	NM_018158	22950		NM_018158	ENSG00000163798	SLC4A1AP	HLC3	solute carrier family 4 member 1 adaptor protein	protein-coding
237254	chrX	110238221	110238700	+	0	NA	intron (NM_001025580, intron 1 of 4)	L1P2|LINE|L1	-13400	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
198689	chr6	108074331	108075730	+	0	NA	promoter-TSS (NM_014028)	promoter-TSS (NM_014028)	-289	NM_014028	28962		NM_014028	ENSG00000081087	OSTM1	GIPN|GL|HSPC019|OPTB5	osteoclastogenesis associated transmembrane protein 1	protein-coding
149651	chr21	33550401	33550600	+	0	NA	promoter-TSS (NR_106756)	promoter-TSS (NR_106756)	-162	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
185782	chr5	132406101	132406730	+	0	NA	Intergenic	Intergenic	-4514	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
48011	chr12	6930801	6931080	+	0	NA	intron (NM_001940, intron 1 of 9)	intron (NM_001940, intron 1 of 9)	2981	NM_001940	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
69349	chr14	93970471	93971750	+	0	NA	intron (NM_001202429, intron 1 of 9)	intron (NM_001202429, intron 1 of 9)	5460	NM_001202429	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
6851	chr1	31057451	31057550	+	0	NA	intron (NM_014676, intron 2 of 21)	AluSx1|SINE|Alu	8217	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
176390	chr4	88693901	88694130	+	0	NA	intron (NM_001375479, intron 23 of 25)	intron (NM_001375479, intron 23 of 25)	3814	NM_153757	266812		NM_153757	ENSG00000177432	NAP1L5	DRLM	nucleosome assembly protein 1 like 5	protein-coding
211855	chr7	110993921	110994530	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-96781	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
143172	chr20	24144001	24144730	+	0	NA	Intergenic	Intergenic	-55402	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
96463	chr17	40227501	40227700	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSx|SINE|Alu	8296	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
97266	chr17	43014101	43014500	+	0	NA	TTS (NM_006373)	TTS (NM_006373)	7516	NM_005533	3430		NM_005533	ENSG00000068079	IFI35	IFP35	interferon induced protein 35	protein-coding
208612	chr7	72956601	72957180	+	0	NA	Intergenic	AluSz|SINE|Alu	-2127	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
222611	chr8	141037421	141037680	+	0	NA	Intergenic	Intergenic	-35471	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
93984	chr17	21979521	21979780	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-223345	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
136549	chr2	177395251	177396000	+	0	NA	intron (NM_003659, intron 1 of 19)	intron (NM_003659, intron 1 of 19)	2852	NM_003659	8540		NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3	alkylglycerone phosphate synthase	protein-coding
14256	chr1	143254481	143255100	+	0	NA	Intergenic	Intergenic	167802	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
77169	chr15	80062551	80062950	+	0	NA	intron (NM_001242914, intron 1 of 6)	intron (NM_001242914, intron 1 of 6)	2590	NM_001242914	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
27591	chr10	32386901	32387300	+	0	NA	Intergenic	Intergenic	-8331	NR_168506	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
206547	chr7	35624451	35625330	+	0	NA	Intergenic	Intergenic	70245	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
39897	chr11	62504851	62505600	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	40439	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
57332	chr12	121696401	121696600	+	0	NA	Intergenic	AluSq|SINE|Alu	-16252	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
162006	chr3	46405901	46406100	+	0	NA	intron (NR_125406, intron 1 of 3)	AluJr|SINE|Alu	1059	NR_125406	102724297		NR_125406	ENSG00000223552	CCR5AS	-	CCR5 antisense RNA	ncRNA
21840	chr1	207353801	207354200	+	0	NA	intron (NR_125349, intron 10 of 10)	intron (NR_125349, intron 10 of 10)	32322	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
16675	chr1	155187101	155187550	+	0	NA	exon (NM_002456, exon 7 of 8)	exon (NM_002456, exon 7 of 8)	5584	NM_001204287	4582		NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|ADTKD2|CA 15-3|CD227|Ca15-3|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding
201682	chr6	149543871	149544030	+	0	NA	intron (NM_139126, intron 1 of 12)	intron (NM_139126, intron 1 of 12)	2093	NM_139126	85313		NM_139126	ENSG00000131013	PPIL4	HDCME13P	peptidylprolyl isomerase like 4	protein-coding
160287	chr3	27340501	27340900	+	0	NA	intron (NM_199347, intron 6 of 24)	L1MA4A|LINE|L1	28683	NM_199347	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
215723	chr8	1755401	1756030	+	0	NA	Intergenic	Intergenic	7619	NR_134302	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
196697	chr6	44924471	44924630	+	0	NA	intron (NM_001350324, intron 10 of 11)	intron (NM_001350324, intron 10 of 11)	273220	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
226296	chr9	68366821	68367730	+	0	NA	intron (NM_021965, intron 1 of 10)	intron (NM_021965, intron 1 of 10)	-9409	NR_121191	572558		NR_015423	ENSG00000224958	PGM5-AS1	FAM233A	PGM5 antisense RNA 1	ncRNA
212914	chr7	130905401	130906150	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	7535	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
221763	chr8	127847751	127847850	+	0	NA	intron (NR_003367, intron 1 of 8)	L1MC4a|LINE|L1	51838	NR_031609	100302185		NR_031609	ENSG00000283710	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
204002	chr7	1855371	1855530	+	0	NA	intron (NM_001304524, intron 16 of 16)	MLT1A0-int|LTR|ERVL-MaLR	-11197	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
16714	chr1	155236451	155236750	+	0	NA	intron (NM_001171812, intron 6 of 9).3	AluJb|SINE|Alu	4649	NM_001171812	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
205258	chr7	8130971	8131130	+	0	NA	intron (NR_146926, intron 12 of 13)	MLT1K|LTR|ERVL-MaLR	131117	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
82949	chr16	21868801	21869680	+	0	NA	Intergenic	Intergenic	-2505	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
43930	chr11	92705421	92705680	+	0	NA	intron (NM_001367949, intron 4 of 27)	(GTG)n|Simple_repeat|Simple_repeat	210078	NR_135091	105369431		NR_135091	ENSG00000282916	LINC02746	-	long intergenic non-protein coding RNA 2746	ncRNA
194833	chr6	34394221	34394480	+	0	NA	intron (NM_001202470, intron 5 of 8)	AluJb|SINE|Alu	-1681	NM_006703	11165		NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
235771	chrX	49064871	49065030	+	0	NA	intron (NM_033626, intron 6 of 9)	intron (NM_033626, intron 6 of 9)	5951	NM_001163323	90060		NM_033626	ENSG00000147144	CCDC120	JM11	coiled-coil domain containing 120	protein-coding
27262	chr10	29736701	29737530	+	0	NA	promoter-TSS (NM_001323599)	promoter-TSS (NM_001323599)	-179	NM_001323599	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
73693	chr15	44986451	44986750	+	0	NA	Intergenic	Intergenic	29913	NM_152448	145645		NM_152448	ENSG00000167014	TERB2	C15orf43|SPGF59	telomere repeat binding bouquet formation protein 2	protein-coding
26799	chr10	23365521	23365780	+	0	NA	Intergenic	L2a|LINE|L2	-20853	NM_153714	256815		NM_153714	ENSG00000179133	C10orf67	C10orf115|LINC01552	chromosome 10 open reading frame 67	protein-coding
178505	chr4	150824871	150825030	+	0	NA	intron (NM_001367550, intron 30 of 56)	AluJr|SINE|Alu	190317	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
211961	chr7	112550401	112550830	+	0	NA	Intergenic	LTR41C|LTR|ERVL	-67450	NR_110160	100996249		NR_110159		LINC03076	-	long intergenic non-protein coding RNA 3076	ncRNA
197135	chr6	57961051	57961950	+	0	NA	promoter-TSS (NR_003660)	promoter-TSS (NR_003660)	-54	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
225921	chr9	40499721	40499980	+	0	NA	promoter-TSS (NR_136300)	promoter-TSS (NR_136300)	119	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
152144	chr22	19986471	19987700	+	0	NA	intron (NM_001670, intron 3 of 19)	CpG	23332	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
76839	chr15	77487201	77487600	+	0	NA	Intergenic	Intergenic	-38195	NR_135692	101929457		NR_135692	ENSG00000259362	LOC101929457	-	uncharacterized LOC101929457	ncRNA
234657	chrX	20137101	20137400	+	0	NA	promoter-TSS (NR_023358)	promoter-TSS (NR_023358)	-837	NR_023358	100158262		NR_023358		SCARNA9L	-	small Cajal body-specific RNA 9 like	ncRNA
104659	chr17	81482351	81482650	+	0	NA	Intergenic	Intergenic	30299	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
131712	chr2	97806801	97807380	+	0	NA	intron (NM_015348, intron 19 of 40)	intron (NM_015348, intron 19 of 40)	73790	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
118553	chr19	36132371	36132880	+	0	NA	Intergenic	Intergenic	-7441	NM_001003962	826		NM_001749	ENSG00000126247	CAPNS1	CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1|PPH6	calpain small subunit 1	protein-coding
120117	chr19	42187951	42188250	+	0	NA	Intergenic	AluJb|SINE|Alu	29577	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
28173	chr10	43689201	43690470	+	0	NA	Intergenic	CpG	-40954	NM_006973	7580		NM_006973	ENSG00000169740	ZNF32	KOX30|ZNF637|Zfp637	zinc finger protein 32	protein-coding
190210	chr5	178224121	178224800	+	0	NA	non-coding (NR_103510, exon 8 of 14)	non-coding (NR_103510, exon 8 of 14)	8342	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
48640	chr12	10397341	10398280	+	0	NA	non-coding (NR_120430, exon 4 of 4)	non-coding (NR_120430, exon 4 of 4)	-7769	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
30309	chr10	75297151	75297450	+	0	NA	intron (NR_038225, intron 1 of 3)	L2b|LINE|L2	917	NR_038223	253264		NR_038223	ENSG00000226051	ZNF503-AS1	-	ZNF503 antisense RNA 1	ncRNA
55805	chr12	108728471	108728730	+	0	NA	intron (NM_014325, intron 1 of 10)	L1MB7|LINE|L1	2243	NM_001276471	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
55491	chr12	104738301	104738650	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	146842	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
51499	chr12	52120871	52121030	+	0	NA	Intergenic	MER41A|LTR|ERV1	27381	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
83237	chr16	23852021	23852300	+	0	NA	intron (NM_212535, intron 2 of 16)	L1MA7|LINE|L1	16177	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
221664	chr8	125968751	125969400	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-17878	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
138782	chr2	216056721	216057050	+	0	NA	intron (NM_018441, intron 4 of 7)	MER112|DNA|hAT-Charlie	-22789	NM_001372189	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
215624	chr7	159248021	159248280	+	0	NA	Intergenic	L1MD3|LINE|L1	-103193	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
104909	chr17	81904521	81905350	+	0	NA	exon (NM_001282204, exon 13 of 13)	exon (NM_001282204, exon 13 of 13)	2697	NM_148896	256933		NM_148896	ENSG00000183979	NPB	L7|PPL7|PPNPB	neuropeptide B	protein-coding
234907	chrX	31266671	31267030	+	0	NA	5' UTR (NM_004016, exon 1 of 17)	5' UTR (NM_004016, exon 1 of 17)	104	NM_004018	1756		NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85	dystrophin	protein-coding
133033	chr2	112048801	112049630	+	0	NA	Intergenic	LTR13|LTR|ERVK	-6054	NM_032824	84910		NM_032824	ENSG00000153214	TMEM87B	-	transmembrane protein 87B	protein-coding
213581	chr7	139363901	139364330	+	0	NA	intron (NM_016019, intron 1 of 9)	AluSx1|SINE|Alu	4221	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
136988	chr2	190529171	190529530	+	0	NA	intron (NR_136298, intron 1 of 8)	L2a|LINE|L2	5372	NM_001142645	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
103080	chr17	77321771	77322700	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	2720	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
13688	chr1	116672371	116672830	+	0	NA	TTS (NR_031564)	TTS (NR_031564)	854	NR_031564	100302117		NR_031564	ENSG00000211543	MIR320B1	MIR320B-1|MIRN320B1|hsa-mir-320b-1|mir-320b-1	microRNA 320b-1	ncRNA
25153	chr10	4825871	4827500	+	0	NA	intron (NM_001271021, intron 1 of 7)	intron (NM_001271021, intron 1 of 7)	478	NM_001040177	83592		NM_031436	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|HTSP1|LoopADR|TAKR|hTSP|htAKR	aldo-keto reductase family 1 member E2	protein-coding
36661	chr11	8032971	8033900	+	0	NA	Intergenic	Intergenic	-5198	NM_003320	7275		NM_003320	ENSG00000166402	TUB	RDOB|rd5	TUB bipartite transcription factor	protein-coding
87610	chr16	74365351	74365450	+	0	NA	intron (NR_026950, intron 1 of 14)	MIR|SINE|MIR	2855	NR_026950	283922		NR_026950	ENSG00000290890	PDPR2P	-	pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene	pseudo
123628	chr19	54616251	54616350	+	0	NA	promoter-TSS (NM_006669).2	promoter-TSS (NM_006669).2	-630	NM_006669	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
47772	chr12	6552501	6552700	+	0	NA	intron (NR_036467, intron 1 of 9)	intron (NR_036467, intron 1 of 9)	3442	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
56636	chr12	118360451	118360550	+	0	NA	promoter-TSS (NM_001346489)	promoter-TSS (NM_001346489)	-795	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
203337	chr6	170247321	170247780	+	0	NA	Intergenic	Intergenic	15019	NR_002787	154449		NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
133339	chr2	113912151	113912450	+	0	NA	intron (NM_001277140, intron 1 of 11)	intron (NM_001277140, intron 1 of 11)	-21308	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128539	chr2	60809521	60810280	+	0	NA	Intergenic	AluSx1|SINE|Alu	53632	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
29257	chr10	69121621	69122200	+	0	NA	Intergenic	Intergenic	-2243	NM_001035260	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
145153	chr20	38837121	38837380	+	0	NA	intron (NM_001172735, intron 2 of 9)	MIR|SINE|MIR	31553	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
141076	chr2	238283821	238284280	+	0	NA	intron (NM_022817, intron 1 of 22)	MIR|SINE|MIR	4560	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
236524	chrX	72103051	72103150	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	28815	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
95864	chr17	38846721	38847050	+	0	NA	TTS (NM_000978)	TTS (NM_000978)	4773	NR_145761	109617002		NR_145761	ENSG00000252699	SNORA21B	-	small nucleolar RNA, H/ACA box 21B	snoRNA
172181	chr4	1236701	1237180	+	0	NA	intron (NM_001377193, intron 3 of 9)	intron (NM_001377193, intron 3 of 9)	11788	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
214248	chr7	148884001	148886030	+	0	NA	promoter-TSS (NM_152998)	promoter-TSS (NM_152998)	-724	NM_001203247	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
183195	chr5	75967771	75968130	+	0	NA	Intergenic	L1PA4|LINE|L1	-115433	NM_001297716	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
16222	chr1	153926951	153927250	+	0	NA	Intergenic	AluSg|SINE|Alu	-4128	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
62025	chr13	87671201	87671930	+	0	NA	promoter-TSS (NR_033829)	promoter-TSS (NR_033829)	194	NM_001384609	26050		NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	SLIT and NTRK like family member 5	protein-coding
61940	chr13	78608451	78608900	+	0	NA	intron (NR_047001, intron 5 of 5)	intron (NR_047001, intron 5 of 5)	-5123	NM_006237	5457		NM_006237	ENSG00000152192	POU4F1	ATITHS|BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
107420	chr18	46186051	46186350	+	0	NA	intron (NM_145055, intron 1 of 4)	intron (NM_145055, intron 1 of 4)	12166	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
81167	chr16	4427371	4428130	+	0	NA	intron (NM_001286516, intron 1 of 8)	AluJb|SINE|Alu	1882	NM_005147	9093		NM_005147	ENSG00000103423	DNAJA3	HCA57|TID1|Tid1-L|Tid1-S|hTID-1	DnaJ heat shock protein family (Hsp40) member A3	protein-coding
168852	chr3	152277471	152277630	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-7924	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
157224	chr22	43226301	43226700	+	0	NA	intron (NM_173050, intron 10 of 21)	L2a|LINE|L2	13826	NR_134632	105373051		NR_134632	ENSG00000236272	SCUBE1-AS2	-	SCUBE1 antisense RNA 2	ncRNA
190037	chr5	177513351	177514050	+	0	NA	exon (NM_001321830, exon 10 of 17)	exon (NM_001321830, exon 10 of 17)	-2600	NM_001375799	79930		NM_024872	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
206825	chr7	37285801	37286300	+	0	NA	intron (NM_014800, intron 4 of 21)	intron (NM_014800, intron 4 of 21)	67618	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
74584	chr15	60557051	60557780	+	0	NA	intron (NM_134260, intron 2 of 11)	intron (NM_134260, intron 2 of 11)	35111	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
115649	chr19	16118271	16118930	+	0	NA	intron (NM_005370, intron 2 of 7)	intron (NM_005370, intron 2 of 7)	6711	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
103201	chr17	77468751	77469050	+	0	NA	intron (NM_001293698, intron 1 of 9)	L2|LINE|L2	-6735	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
139126	chr2	218990971	218991330	+	0	NA	intron (NM_057094, intron 3 of 4)	intron (NM_057094, intron 3 of 4)	2272	NM_057093	1412		NM_057093	ENSG00000163499	CRYBA2	CTRCT42	crystallin beta A2	protein-coding
226268	chr9	68242491	68243350	+	0	NA	intron (NM_001378115, intron 1 of 13)	intron (NM_001378115, intron 1 of 13)	937	NM_201453	445571		NM_201453	ENSG00000196873	ZNG1C	CBWD3|bA561O23.1	Zn regulated GTPase metalloprotein activator 1C	protein-coding
143404	chr20	29410151	29410450	+	0	NA	Intergenic	Intergenic	6661	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
185850	chr5	132487071	132488570	+	0	NA	TTS (NR_149069)	TTS (NR_149069)	2953	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
178164	chr4	142365451	142365950	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	37433	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
22734	chr1	224329701	224331080	+	0	NA	promoter-TSS (NM_001243147)	promoter-TSS (NM_001243147)	-201	NM_206840	4931		NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP like	protein-coding
12647	chr1	109248151	109248250	+	0	NA	Intergenic	Intergenic	-1339	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
68743	chr14	91024551	91025200	+	0	NA	intron (NM_001322228, intron 1 of 15)	intron (NM_001322228, intron 1 of 15)	35249	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
127015	chr2	36957571	36957930	+	0	NA	intron (NM_003162, intron 1 of 17)	AluSx1|SINE|Alu	8786	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
37638	chr11	20862351	20862450	+	0	NA	intron (NM_006157, intron 4 of 19)	L1MC1|LINE|L1	192814	NM_006157	4745		NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
112930	chr19	7680501	7681200	+	0	NA	promoter-TSS (NM_001042462)	promoter-TSS (NM_001042462)	17	NM_001042462	126003		NM_174894	ENSG00000181029	TRAPPC5	TRS31	trafficking protein particle complex subunit 5	protein-coding
72894	chr15	40334771	40334930	+	0	NA	3' UTR (NM_207380, exon 11 of 11)	3' UTR (NM_207380, exon 11 of 11)	6117	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
99120	chr17	49221051	49221150	+	0	NA	intron (NM_001135186, intron 6 of 7)	AluSz|SINE|Alu	9666	NM_001143804	162466		NM_178500	ENSG00000173868	PHOSPHO1	-	phosphoethanolamine/phosphocholine phosphatase 1	protein-coding
18249	chr1	161057671	161057830	+	0	NA	intron (NM_001025598, intron 2 of 11)	AluSx|SINE|Alu	-11773	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
106977	chr18	32010371	32010530	+	0	NA	Intergenic	LTR8|LTR|ERV1	-8375	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
56102	chr12	110727001	110727200	+	0	NA	intron (NM_002710, intron 3 of 6)	AluSz|SINE|Alu	15791	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
236979	chrX	101404501	101405030	+	0	NA	intron (NR_164783, intron 1 of 7)	AluSz6|SINE|Alu	3160	NM_000169	2717		NM_000169	ENSG00000102393	GLA	GALA	galactosidase alpha	protein-coding
57045	chr12	120833971	120834330	+	0	NA	intron (NM_139015, intron 1 of 10)	L4_A_Mam|LINE|RTE-X	70208	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
5195	chr1	24956771	24957030	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	8110	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
130881	chr2	87416151	87416630	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-39037	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
103919	chr17	79823421	79823680	+	0	NA	promoter-TSS (NR_146504)	promoter-TSS (NR_146504)	98	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
233917	chrX	1679121	1679730	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	64292	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
94995	chr17	32355771	32356330	+	0	NA	intron (NM_001098507, intron 2 of 11)	MIRc|SINE|MIR	5893	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
85286	chr16	48606721	48607550	+	0	NA	intron (NM_153029, intron 1 of 6)	intron (NM_153029, intron 1 of 6)	3045	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
160939	chr3	36900901	36901700	+	0	NA	intron (NM_014831, intron 2 of 22)	MER34A|LTR|ERV1	43754	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
99507	chr17	50205501	50205730	+	0	NA	Intergenic	L2|LINE|L2	-3984	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
214537	chr7	150518151	150518450	+	0	NA	intron (NM_153236, intron 1 of 1)	L1MC5|LINE|L1	3428	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
129274	chr2	68412801	68413030	+	0	NA	Intergenic	Intergenic	47633	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
55390	chr12	104455521	104455900	+	0	NA	Intergenic	Intergenic	-1238	NM_018413	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
6213	chr1	27478221	27478480	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	11817	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
190312	chr5	179607121	179607700	+	0	NA	intron (NM_001040452, intron 16 of 17).2	intron (NM_001040452, intron 16 of 17).2	-3669	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
85073	chr16	32461851	32461950	+	0	NA	Intergenic	TAR1|Satellite|telo	-171919	NR_033866	390705		NR_033866		LOC390705	-	protein phosphatase 2 regulatory subunit B'', beta pseudogene	pseudo
201634	chr6	149456371	149457130	+	0	NA	exon (NM_207360, exon 4 of 6)	exon (NM_207360, exon 4 of 6)	28264	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
146133	chr20	48635651	48636650	+	0	NA	intron (NM_020820, intron 32 of 39)	MER20|DNA|hAT-Charlie	191849	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
155086	chr22	37563801	37564850	+	0	NA	intron (NM_152243, intron 1 of 2)	intron (NM_152243, intron 1 of 2)	3845	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
71650	chr14	106809671	106809830	+	0	NA	Intergenic	Intergenic	41249	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
138633	chr2	210180151	210180450	+	0	NA	Intergenic	Intergenic	-8891	NM_152519	151050		NM_152519	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1 like	protein-coding
163167	chr3	50170601	50171000	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	11781	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
78529	chr15	92950151	92950250	+	0	NA	TTS (NM_001042572)	TTS (NM_001042572)	45801	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
94960	chr17	32135471	32136130	+	0	NA	Intergenic	LTR13|LTR|ERVK	-6654	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
17950	chr1	160398801	160399250	+	0	NA	Intergenic	Intergenic	-1539	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
153775	chr22	29578821	29579380	+	0	NA	intron (NM_001202502, intron 1 of 9)	AluSz|SINE|Alu	1996	NM_001202502	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
204381	chr7	2982521	2983780	+	0	NA	intron (NM_001324281, intron 1 of 25)	intron (NM_001324281, intron 1 of 25)	60717	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
55365	chr12	104285771	104285930	+	0	NA	intron (NM_001093771, intron 3 of 16)	intron (NM_001093771, intron 3 of 16)	-1182	NM_182729	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
212233	chr7	121138371	121138550	+	0	NA	intron (NM_001105533, intron 13 of 17)	AmnSINE1|SINE|5S-Deu-L2	149069	NM_001105533	79974		NM_024913	ENSG00000106034	CPED1	C7orf58	cadherin like and PC-esterase domain containing 1	protein-coding
220255	chr8	97645101	97646230	+	0	NA	intron (NM_178812, intron 1 of 11)	intron (NM_178812, intron 1 of 11)	1481	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
30869	chr10	86723101	86723530	+	0	NA	intron (NM_001171610, intron 12 of 13)	(GATG)n|Simple_repeat|Simple_repeat	-33304	NM_004329	657		NM_004329	ENSG00000107779	BMPR1A	10q23del|ACVRLK3|ALK-3|ALK3|BMPR-1A|CD292|SKR5	bone morphogenetic protein receptor type 1A	protein-coding
176292	chr4	87227251	87227350	+	0	NA	Intergenic	Intergenic	-6682	NM_001292006	57563		NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
219405	chr8	70608101	70609180	+	0	NA	promoter-TSS (NM_014294)	promoter-TSS (NM_014294)	63	NR_038881	286190		NR_038881	ENSG00000246366	LACTB2-AS1	-	LACTB2 antisense RNA 1	ncRNA
156685	chr22	41666551	41668150	+	0	NA	Intergenic	AluSx1|SINE|Alu	21517	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
76054	chr15	72316751	72316850	+	0	NA	intron (NM_052840, intron 1 of 12)	L2b|LINE|L2	3146	NM_001172684	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
90095	chr16	90034821	90035280	+	0	NA	intron (NM_001286208, intron 4 of 9)	AluSp|SINE|Alu	-5149	NR_122031	750		NM_001214	ENSG00000221819	GAS8-AS1	C16orf3	GAS8 antisense RNA 1	ncRNA
54173	chr12	77010921	77011180	+	0	NA	Intergenic	Intergenic	54519	NM_203394	144455		NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
145206	chr20	38899571	38899730	+	0	NA	intron (NM_001172735, intron 4 of 9)	intron (NM_001172735, intron 4 of 9)	-26767	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
68394	chr14	80941201	80942330	+	0	NA	promoter-TSS (NM_152446)	promoter-TSS (NM_152446)	-27	NM_152446	145508		NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding
1292	chr1	2334301	2334700	+	0	NA	intron (NM_024848, intron 12 of 13)	intron (NM_024848, intron 12 of 13)	18161	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
209722	chr7	87028601	87028800	+	0	NA	intron (NM_001142749, intron 1 of 21)	L2a|LINE|L2	11534	NM_001291990	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
136072	chr2	173103471	173103630	+	0	NA	intron (NM_133646, intron 2 of 11)	intron (NM_133646, intron 2 of 11)	27704	NM_016653	51776		NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
203012	chr6	163424421	163424680	+	0	NA	intron (NM_206854, intron 1 of 6)	MIRc|SINE|MIR	9832	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
60682	chr13	43664521	43664980	+	0	NA	intron (NM_001347964, intron 2 of 17)	intron (NM_001347964, intron 2 of 17)	-35273	NM_001127615	55068		NM_017993	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
25235	chr10	5976701	5976900	+	0	NA	intron (NM_001256765, intron 1 of 7)	intron (NM_001256765, intron 1 of 7)	743	NM_172200	3601		NM_002189	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor subunit alpha	protein-coding
226729	chr9	75809051	75809150	+	0	NA	Intergenic	AluY|SINE|Alu	-81544	NM_001190482	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
120471	chr19	44738271	44738430	+	0	NA	Intergenic	Intergenic	-10358	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
84731	chr16	30929271	30929430	+	0	NA	intron (NM_001282351, intron 6 of 10)	MIRb|SINE|MIR	4775	NM_001099784	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
186830	chr5	139405751	139406130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1851	NM_194296	202051		NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
143592	chr20	31691751	31692600	+	0	NA	intron (NR_134257, intron 1 of 2)	MER5A|DNA|hAT-Charlie	-29332	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
90060	chr16	89946501	89947180	+	0	NA	Intergenic	Intergenic	-1891	NM_001242821	54849		NM_017702	ENSG00000140995	DEF8	-	differentially expressed in FDCP 8 homolog	protein-coding
76542	chr15	75198621	75199980	+	0	NA	Intergenic	Intergenic	-2582	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
116498	chr19	18137071	18137230	+	0	NA	intron (NM_015016, intron 17 of 26)	intron (NM_015016, intron 17 of 26)	-16013	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
156418	chr22	41201371	41202180	+	0	NA	Intergenic	AluSx|SINE|Alu	-3537	NM_031488	83746		NM_031488	ENSG00000100395	L3MBTL2	H-l(3)mbt-l|L3MBT	L3MBTL histone methyl-lysine binding protein 2	protein-coding
138734	chr2	213243421	213243680	+	0	NA	Intergenic	Intergenic	40659	NR_161186	100130451		NR_144752		SPAG16-DT	-	SPAG16 divergent transcript	ncRNA
229077	chr9	114357521	114357980	+	0	NA	intron (NM_001317952, intron 11 of 20)	L2c|LINE|L2	27881	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
201733	chr6	149847371	149847730	+	0	NA	intron (NM_032832, intron 2 of 6)	intron (NM_032832, intron 2 of 6)	-15948	NR_045126	100652739		NR_045126	ENSG00000268592	RAET1E-AS1	RAET1G-AS1	RAET1E antisense RNA 1	ncRNA
53448	chr12	65197021	65197280	+	0	NA	intron (NM_001167614, intron 1 of 12)	MER57E1|LTR|ERV1	27567	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
110152	chr19	1624501	1625130	+	0	NA	intron (NM_003200, intron 7 of 18)	Tigger17|DNA|TcMar-Tigger	-19353	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
8822	chr1	42956471	42956700	+	0	NA	intron (NM_006516, intron 1 of 9)	AluSp|SINE|Alu	2283	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
231780	chr9	132268551	132269200	+	0	NA	intron (NM_001351527, intron 25 of 25)	Charlie2b|DNA|hAT-Charlie	85981	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
61185	chr13	49221151	49221250	+	0	NA	exon (NM_001507, exon 1 of 2)	exon (NM_001507, exon 1 of 2)	862	NM_001507	2862		NM_001507	ENSG00000102539	MLNR	GPR38|MTLR1	motilin receptor	protein-coding
174851	chr4	48651871	48652100	+	0	NA	intron (NM_015030, intron 3 of 63)	intron (NM_015030, intron 3 of 63)	128294	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
183462	chr5	79241871	79242630	+	0	NA	intron (NM_152405, intron 1 of 10)	MIRc|SINE|MIR	6119	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
159833	chr3	16494201	16494400	+	0	NA	intron (NM_015150, intron 1 of 9)	intron (NM_015150, intron 1 of 9)	19399	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
144414	chr20	35305471	35305630	+	0	NA	intron (NM_199487, intron 8 of 8)	intron (NM_199487, intron 8 of 8)	-13125	NM_178468	128876		NM_178468	ENSG00000125998	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83 member C	protein-coding
79112	chr16	203951	204450	+	0	NA	intron (NM_018032, intron 5 of 8)	AluSx|SINE|Alu	23741	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
59782	chr13	30170621	30170880	+	0	NA	Intergenic	L2c|LINE|L2	-17676	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
114764	chr19	13689101	13689430	+	0	NA	Intergenic	Intergenic	-42487	NM_001320566	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
132500	chr2	106057221	106057680	+	0	NA	Intergenic	Intergenic	-8238	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
126643	chr2	28891521	28892050	+	0	NA	Intergenic	L2a|LINE|L2	-2882	NM_015131	23160		NM_015131	ENSG00000163811	WDR43	NET12|UTP5	WD repeat domain 43	protein-coding
146716	chr20	50589221	50589930	+	0	NA	intron (NM_080829, intron 20 of 21)	AluSx|SINE|Alu	3789	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
16573	chr1	155003201	155004100	+	0	NA	intron (NM_001377455, intron 2 of 3)	CpG	848	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
176127	chr4	83103001	83103200	+	0	NA	intron (NM_016619, intron 3 of 4)	AluY|SINE|Alu	6789	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
116466	chr19	18092521	18093030	+	0	NA	intron (NM_001290024, intron 1 of 17)	AluJr|SINE|Alu	-5003	NM_015016	23031		NM_015016	ENSG00000099308	MAST3	DEE108	microtubule associated serine/threonine kinase 3	protein-coding
3581	chr1	16211371	16211730	+	0	NA	intron (NM_153213, intron 1 of 15)	intron (NM_153213, intron 1 of 15)	1102	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
104211	chr17	80539021	80539400	+	0	NA	Intergenic	Intergenic	-5628	NM_001163034	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
238710	chrX	154094871	154095030	+	0	NA	intron (NM_004992, intron 1 of 3)	intron (NM_004992, intron 1 of 3)	2019	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
160751	chr3	32516401	32516600	+	0	NA	Intergenic	AluSp|SINE|Alu	-10111	NR_106753	102465247		NR_106753	ENSG00000276147	MIR548AY	hsa-mir-548ay	microRNA 548ay	ncRNA
87884	chr16	78478551	78478650	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	378946	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19294	chr1	172870671	172871480	+	0	NA	Intergenic	MIRc|SINE|MIR	179866	NM_005092	8995		NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	TNF superfamily member 18	protein-coding
206238	chr7	29146271	29146430	+	0	NA	promoter-TSS (NM_001293069)	promoter-TSS (NM_001293069)	187	NM_019029	54504		NM_019029	ENSG00000106066	CPVL	HVLP	carboxypeptidase vitellogenic like	protein-coding
192848	chr6	27161671	27162400	+	0	NA	Intergenic	Intergenic	14409	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
65012	chr14	38867651	38867830	+	0	NA	intron (NR_039982, intron 2 of 4)	intron (NR_039982, intron 2 of 4)	-14856	NR_135256	105370457		NR_135256		LOC105370457	-	uncharacterized LOC105370457	ncRNA
151822	chr22	18407171	18407330	+	0	NA	Intergenic	L1M3a|LINE|L1	-14134	NR_165629	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
235893	chrX	52920321	52921670	+	0	NA	Intergenic	CpG	21936	NM_001099684	727866		NM_001099684	ENSG00000179304	FAM156B	TMEM29B	family with sequence similarity 156 member B	protein-coding
73595	chr15	44543271	44543630	+	0	NA	intron (NM_001284336, intron 2 of 5)	AluSc|SINE|Alu	6303	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
126744	chr2	30223271	30223880	+	0	NA	Intergenic	Intergenic	-7959	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
29219	chr10	69004571	69005200	+	0	NA	intron (NM_015634, intron 2 of 6)	AluJb|SINE|Alu	16082	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
128028	chr2	47180901	47181300	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-4164	NM_001305625	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
195745	chr6	39724751	39725620	+	0	NA	intron (NM_145027, intron 1 of 22)	CpG	223	NM_145027	221458		NM_145027	ENSG00000164627	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
114663	chr19	13059401	13059850	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	34846	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
88053	chr16	81454901	81455350	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	9955	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
117101	chr19	19185871	19186750	+	0	NA	intron (NM_001145783, intron 2 of 3)	L2a|LINE|L2	5842	NR_027308	4207		NM_005919	ENSG00000213999	BORCS8-MEF2B	LOC729991-MEF2B|MEF2B|MEF2BNB-MEF2B|RSRFR2	BORCS8-MEF2B readthrough	protein-coding
127154	chr2	37880671	37880850	+	0	NA	Intergenic	Intergenic	-4897	NR_110012	101929559		NR_110011	ENSG00000237803	PIRAT1	LINC00211|NCRNA00211|PIRAT	PU.1 (SPI1) induced regulator of S100A8 and S100A9 alarmin transcription 1	ncRNA
162935	chr3	49469651	49471200	+	0	NA	5' UTR (NM_001177640, exon 1 of 4)	5' UTR (NM_001177640, exon 1 of 4)	158	NM_004393	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
108680	chr18	76963971	76964230	+	0	NA	intron (NM_001306089, intron 30 of 30)	L1PB1|LINE|L1	52955	NM_001025090	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
183575	chr5	80157071	80157430	+	0	NA	intron (NM_001174072, intron 8 of 11)	AluSq2|SINE|Alu	-73585	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
59991	chr13	32408121	32408630	+	0	NA	intron (NM_052818, intron 1 of 4)	intron (NM_052818, intron 1 of 4)	19755	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
174965	chr4	49512701	49512900	+	0	NA	Intergenic	Intergenic	526158	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
208186	chr7	64893651	64893750	+	0	NA	intron (NM_001385644, intron 3 of 7)	(CCTCC)n|Simple_repeat|Simple_repeat	-9542	NR_003099	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
95304	chr17	35543101	35543300	+	0	NA	TTS (NM_001129820)	TTS (NM_001129820)	-5339	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
102493	chr17	75754871	75755200	+	0	NA	intron (NM_001321123, intron 33 of 38)	intron (NM_001321123, intron 33 of 38)	10157	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
73560	chr15	44296751	44297680	+	0	NA	intron (NM_177974, intron 1 of 8)	intron (NM_177974, intron 1 of 8)	8496	NM_177974	113201		NM_138423	ENSG00000166734	GOLM2	CASC4|H63	golgi membrane protein 2	protein-coding
67271	chr14	69154801	69155530	+	0	NA	Intergenic	Intergenic	-1968	NM_001284206	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
70631	chr14	102821101	102821830	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	43986	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
14502	chr1	144562851	144562950	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-10957	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
52487	chr12	55998501	55999050	+	0	NA	intron (NM_001032386, intron 2 of 4)	AluJr|SINE|Alu	1499	NM_000456	6821		NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
124446	chr19	58504571	58505380	+	0	NA	intron (NM_001321196, intron 3 of 9)	AluY|SINE|Alu	7017	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
201116	chr6	142868971	142869130	+	0	NA	intron (NM_006734, intron 1 of 9)	MER20|DNA|hAT-Charlie	76126	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
33243	chr10	114306221	114306680	+	0	NA	intron (NM_032550, intron 10 of 18)	intron (NM_032550, intron 10 of 18)	66836	NM_001320804	340706		NM_198496	ENSG00000165816	VWA2	AMACO|CCSP-2|CCSP2|NET42	von Willebrand factor A domain containing 2	protein-coding
238567	chrX	153818551	153819530	+	0	NA	intron (NM_032512, intron 1 of 7)	CpG	10919	NM_001303516	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
223367	chr8	143877171	143877330	+	0	NA	intron (NM_031308, intron 1 of 1)	intron (NM_031308, intron 1 of 1)	1217	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
108569	chr18	74994501	74995380	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	210573	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
222259	chr8	133271401	133271800	+	0	NA	intron (NM_001258432, intron 1 of 13)	AluJb|SINE|Alu	25090	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
167702	chr3	130750901	130751300	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-4271	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
101610	chr17	68184681	68186180	+	0	NA	Intergenic	Intergenic	-13230	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
189131	chr5	170922501	170922700	+	0	NA	intron (NM_022897, intron 11 of 27)	L1P2|LINE|L1	60582	NM_022897	64901		NM_022897	ENSG00000204764	RANBP17	-	RAN binding protein 17	protein-coding
217063	chr8	23426971	23427530	+	0	NA	Intergenic	Intergenic	-23130	NM_002318	4017		NM_002318	ENSG00000134013	LOXL2	LOR|LOR2|WS9-14	lysyl oxidase like 2	protein-coding
149219	chr21	25486071	25486230	+	0	NA	Intergenic	Intergenic	-54449	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
1963	chr1	6587721	6588180	+	0	NA	intron (NM_005341, intron 7 of 10)	intron (NM_005341, intron 7 of 10)	7956	NM_001278647	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
68024	chr14	75146221	75146680	+	0	NA	intron (NM_006827, intron 3 of 4)	intron (NM_006827, intron 3 of 4)	-19402	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
236690	chrX	77743801	77744200	+	0	NA	intron (NM_138270, intron 1 of 33)	L1M2|LINE|L1	42216	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
90325	chr17	1124021	1124280	+	0	NA	intron (NM_001322840, intron 2 of 22).2	intron (NM_001322840, intron 2 of 22).2	2422	NM_001322840	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
200083	chr6	130161921	130162580	+	0	NA	intron (NM_001258275, intron 10 of 13)	intron (NM_001258275, intron 10 of 13)	53635	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
136196	chr2	174563451	174563980	+	0	NA	intron (NM_001375839, intron 6 of 6)	intron (NM_001375839, intron 6 of 6)	-5643	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
148696	chr21	6368821	6370800	+	0	NA	Intergenic	Intergenic	90272	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
155534	chr22	38704071	38704480	+	0	NA	Intergenic	(TTTTTGTT)n|Simple_repeat|Simple_repeat	-1669	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
204506	chr7	4785001	4785780	+	0	NA	intron (NR_157345, intron 7 of 16)	intron (NR_157345, intron 7 of 16)	3249	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
211181	chr7	102593661	102594900	+	0	NA	intron (NM_001079877, intron 12 of 19)	CpG-26271	-21659	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
106808	chr18	23968651	23968950	+	0	NA	Intergenic	Intergenic	-24087	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
90473	chr17	1390471	1390630	+	0	NA	intron (NR_024058, intron 1 of 6)	MIRc|SINE|MIR	9672	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
202385	chr6	157830451	157830980	+	0	NA	intron (NM_016224, intron 1 of 17)	MER3|DNA|hAT-Charlie	7469	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
10690	chr1	74579451	74579750	+	0	NA	intron (NR_121671, intron 1 of 2)	intron (NR_121671, intron 1 of 2)	2170	NR_121671	101927320		NR_121670	ENSG00000234497	ERICH3-AS1	-	ERICH3 antisense RNA 1	ncRNA
25313	chr10	6216251	6216750	+	0	NA	intron (NR_136554, intron 4 of 11)	intron (NR_136554, intron 4 of 11)	13568	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
97381	chr17	43338771	43339230	+	0	NA	Intergenic	LTR13|LTR|ERVK	-38769	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
162502	chr3	48575401	48576000	+	0	NA	exon (NM_000094, exon 73 of 119)	exon (NM_000094, exon 73 of 119)	3277	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
223861	chr9	109801	110000	+	0	NA	Intergenic	Intergenic	8517	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
130014	chr2	74178221	74179580	+	0	NA	promoter-TSS (NM_018221)	promoter-TSS (NM_018221)	-21	NM_001317110	55233		NM_018221	ENSG00000114978	MOB1A	C2orf6|MABKL1B|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B	MOB kinase activator 1A	protein-coding
37282	chr11	14697121	14697380	+	0	NA	intron (NM_001363569, intron 1 of 15)	L1ME3|LINE|L1	53446	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
179577	chr4	185251871	185252030	+	0	NA	intron (NM_001378032, intron 2 of 19)	intron (NM_001378032, intron 2 of 19)	42393	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
181595	chr5	43480951	43481400	+	0	NA	intron (NM_001377401, intron 1 of 3)	AluJr4|SINE|Alu	2690	NM_001377401	64417		NM_022483	ENSG00000151881	TMEM267	C5orf28	transmembrane protein 267	protein-coding
191251	chr6	5992601	5993180	+	0	NA	Intergenic	Intergenic	11154	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
209895	chr7	91944251	91944630	+	0	NA	intron (NM_147185, intron 1 of 49)	AluSz|SINE|Alu	3578	NM_005751	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
54008	chr12	75476151	75476450	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-4455	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
218111	chr8	41487901	41488730	+	0	NA	Intergenic	AluYk3|SINE|Alu	-2081	NM_001362979	51125		NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
88786	chr16	87325671	87325830	+	0	NA	Intergenic	Intergenic	8241	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
67751	chr14	73713301	73715000	+	0	NA	TTS (NM_194278)	TTS (NM_194278)	234	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
84120	chr16	29672651	29673100	+	0	NA	Intergenic	Intergenic	-6133	NM_001318249	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
10665	chr1	70685321	70685580	+	0	NA	Intergenic	L1PB4|LINE|L1	-21003	NR_125938	101927244		NR_125938	ENSG00000229051	LINC01788	-	long intergenic non-protein coding RNA 1788	ncRNA
13232	chr1	112676771	112677400	+	0	NA	intron (NM_001369507, intron 1 of 19)	intron (NM_001369507, intron 1 of 19)	2347	NM_001369507	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
137700	chr2	197494371	197494730	+	0	NA	intron (NM_199440, intron 5 of 11)	intron (NM_199440, intron 5 of 11)	5290	NM_002156	3329		NM_002156	ENSG00000144381	HSPD1	CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13	heat shock protein family D (Hsp60) member 1	protein-coding
164759	chr3	69087301	69087680	+	0	NA	intron (NM_006407, intron 1 of 2)	intron (NM_006407, intron 1 of 2)	2553	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
230217	chr9	127852651	127853100	+	0	NA	intron (NM_001114753, intron 1 of 14)	intron (NM_001114753, intron 1 of 14)	1783	NM_001114753	2022		NM_000118	ENSG00000106991	ENG	END|HHT1|ORW1	endoglin	protein-coding
100219	chr17	59218151	59218450	+	0	NA	Intergenic	Intergenic	-2211	NM_001165993	284161		NM_182569	ENSG00000153982	GDPD1	GDE4	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding
78895	chr15	101015171	101015530	+	0	NA	exon (NM_024652, exon 12 of 34)	exon (NM_024652, exon 12 of 34)	95993	NM_024652	79705		NM_024652	ENSG00000154237	LRRK1	OSMD|RIPK6|Roco1	leucine rich repeat kinase 1	protein-coding
78401	chr15	91955301	91955500	+	0	NA	intron (NM_013272, intron 2 of 9)	AluSx|SINE|Alu	101096	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
114286	chr19	11612921	11613380	+	0	NA	intron (NM_001290083, intron 2 of 4)	(CCTCC)n|Simple_repeat|Simple_repeat	15667	NM_001290085	199692		NM_145295	ENSG00000198551	ZNF627	-	zinc finger protein 627	protein-coding
158941	chr3	10147071	10147430	+	0	NA	intron (NM_000551, intron 2 of 2)	AluSc8|SINE|Alu	5472	NM_198156	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
223605	chr8	144309771	144310230	+	0	NA	intron (NM_005526, intron 4 of 12)	intron (NM_005526, intron 4 of 12)	7315	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
125375	chr2	11153271	11153930	+	0	NA	Intergenic	Intergenic	-1772	NM_001282710	130814		NM_152391	ENSG00000162976	SLC66A3	C2orf22|PQLC3	solute carrier family 66 member 3	protein-coding
85460	chr16	50670801	50671100	+	0	NA	TTS (NM_182854)	TTS (NM_182854)	2095	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
28735	chr10	61960951	61961930	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	59741	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
196374	chr6	43249821	43250500	+	0	NA	intron (NM_032538, intron 2 of 14)	intron (NM_032538, intron 2 of 14)	6679	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
55020	chr12	96379821	96380480	+	0	NA	intron (NM_002595, intron 1 of 16)	AluJo|SINE|Alu	20289	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
125840	chr2	24402771	24402930	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-42314	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
194900	chr6	34694621	34694880	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-1404	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
174357	chr4	38782701	38783100	+	0	NA	promoter-TSS (NM_001017388)	promoter-TSS (NM_001017388)	90	NM_030956	81793		NM_030956	ENSG00000174123	TLR10	CD290	toll like receptor 10	protein-coding
85108	chr16	34062701	34063100	+	0	NA	Intergenic	AluYj4|SINE|Alu	-100678	NR_162093	113218496		NR_162093		MIR9901	-	microRNA 9901	ncRNA
163239	chr3	50271101	50271600	+	0	NA	intron (NM_001290061, intron 5 of 16)	intron (NM_001290061, intron 5 of 16)	-1769	NM_001290062	7869		NM_004636	ENSG00000012171	SEMA3B	LUCA-1|SEMA5|SEMAA|SemA|semaV	semaphorin 3B	protein-coding
170859	chr3	192154751	192155000	+	0	NA	intron (NM_001377292, intron 4 of 4)	L1PA2|LINE|L1	-83755	NR_046596	100873986		NR_046596	ENSG00000231383	FGF12-AS1	-	FGF12 antisense RNA 1	ncRNA
22900	chr1	225871871	225873030	+	0	NA	intron (NM_014698, intron 4 of 24)	MER104|DNA|TcMar-Tc2	9930	NM_014698	9725		NM_014698	ENSG00000196187	TMEM63A	HLD19|KIAA0792	transmembrane protein 63A	protein-coding
9164	chr1	45582551	45582650	+	0	NA	Intergenic	Intergenic	-1388	NM_001195193	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
53626	chr12	68156501	68156700	+	0	NA	intron (NM_000619, intron 3 of 3)	intron (NM_000619, intron 3 of 3)	3140	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
78860	chr15	100340501	100342450	+	0	NA	intron (NM_139057, intron 1 of 21)	CpG-8687	500	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
66559	chr14	62536071	62536230	+	0	NA	Intergenic	L1HS|LINE|L1	-396177	NR_104063	101954204		NR_104063	ENSG00000259142	LINC00644	-	long intergenic non-protein coding RNA 644	ncRNA
85495	chr16	50748821	50749080	+	0	NA	intron (NM_001378745, intron 3 of 18)	AluJb|SINE|Alu	6535	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
148940	chr21	10122071	10122330	+	0	NA	Intergenic	GSATII|Satellite|centr	-291297	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
81809	chr16	11549151	11549250	+	0	NA	non-coding (NR_024320, exon 4 of 4)	non-coding (NR_024320, exon 4 of 4)	-21953	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
41077	chr11	65510481	65511450	+	0	NA	Intergenic	Intergenic	-3533	NR_145459	109136579		NR_145459	ENSG00000289740	TALAM1	-	TALAM1 transcript, MALAT1 antisense RNA	ncRNA
223955	chr9	1050121	1050780	+	0	NA	promoter-TSS (NM_006557)	promoter-TSS (NM_006557)	93	NM_006557	10655		NM_006557	ENSG00000173253	DMRT2	DSXL-2	doublesex and mab-3 related transcription factor 2	protein-coding
50908	chr12	49293851	49294550	+	0	NA	promoter-TSS (NM_006262)	promoter-TSS (NM_006262)	-947	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
85801	chr16	56964301	56964950	+	0	NA	intron (NM_000078, intron 2 of 15)	intron (NM_000078, intron 2 of 15)	2675	NM_000078	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
13454	chr1	114502051	114502350	+	0	NA	intron (NM_033020, intron 1 of 18)	intron (NM_033020, intron 1 of 18)	9003	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
30520	chr10	79349201	79349500	+	0	NA	intron (NM_005729, intron 2 of 5)	intron (NM_005729, intron 2 of 5)	1881	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
236946	chrX	100830771	100831150	+	0	NA	intron (NM_001306206, intron 9 of 14)	intron (NM_001306206, intron 9 of 14)	10569	NM_001325	1478		NM_001325	ENSG00000101811	CSTF2	CSTF64|CstF-64|XLID113	cleavage stimulation factor subunit 2	protein-coding
194650	chr6	33612351	33612650	+	0	NA	Intergenic	AluSz|SINE|Alu	-8822	NM_002224	3710		NM_002224	ENSG00000096433	ITPR3	CMT1J|IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding
193383	chr6	30349621	30349880	+	0	NA	Intergenic	Intergenic	4594	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
102215	chr17	75226921	75227380	+	0	NA	intron (NM_024844, intron 11 of 18)	intron (NM_024844, intron 11 of 18)	21471	NM_024844	79902		NM_024844	ENSG00000125450	NUP85	FROUNT|NPHS17|Nup75	nucleoporin 85	protein-coding
62800	chr13	109708351	109708450	+	0	NA	Intergenic	Intergenic	-19874	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
124479	chr19	58554501	58555830	+	0	NA	promoter-TSS (NM_198426)	promoter-TSS (NM_198426)	-60	NM_198426	27243		NM_014453	ENSG00000130724	CHMP2A	BC-2|BC2|CHMP2|VPS2|VPS2A	charged multivesicular body protein 2A	protein-coding
40299	chr11	63868171	63868630	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	-20137	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
171914	chr4	848121	848380	+	0	NA	Intergenic	Intergenic	-22121	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
86227	chr16	58116221	58116480	+	0	NA	intron (NR_136632, intron 2 of 5)	intron (NR_136632, intron 2 of 5)	13031	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
30671	chr10	80495051	80495650	+	0	NA	intron (NM_001128309, intron 2 of 5)	(TG)n|Simple_repeat|Simple_repeat	27109	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
141572	chr2	241564571	241564930	+	0	NA	intron (NM_032515, intron 3 of 4)	intron (NM_032515, intron 3 of 4)	-5607	NR_033346	100379249		NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	ncRNA
112803	chr19	7494251	7494550	+	0	NA	Intergenic	AluSx|SINE|Alu	-3148	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
231852	chr9	132848601	132849100	+	0	NA	intron (NM_001371771, intron 5 of 12)	intron (NM_001371771, intron 5 of 12)	29434	NM_001317958	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
178984	chr4	163171621	163171880	+	0	NA	Intergenic	LTR19C|LTR|ERV1	-4860	NM_138386	92345		NM_138386	ENSG00000145414	NAF1	PFBMFT7	nuclear assembly factor 1 ribonucleoprotein	protein-coding
185633	chr5	131525701	131526050	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	109354	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
193089	chr6	28863351	28864580	+	0	NA	promoter-TSS (NR_033379)	promoter-TSS (NR_033379)	-288	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
62461	chr13	99361001	99362100	+	0	NA	intron (NR_026644, intron 7 of 8)	L1ME3Cz|LINE|L1	5419	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
73829	chr15	49155121	49156530	+	0	NA	promoter-TSS (NM_004236)	promoter-TSS (NM_004236)	51	NM_001001556	2585		NM_002044	ENSG00000156958	GALK2	GK2	galactokinase 2	protein-coding
172855	chr4	3292101	3294000	+	0	NA	Intergenic	CpG	-21097	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
8572	chr1	41368251	41368880	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	7104	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
43704	chr11	85989871	85990030	+	0	NA	intron (NM_001008660, intron 12 of 19)	intron (NM_001008660, intron 12 of 19)	79134	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
47506	chr12	4099451	4099550	+	0	NA	Intergenic	Intergenic	-174262	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
77807	chr15	88545951	88547050	+	0	NA	promoter-TSS (NR_135744)	promoter-TSS (NR_135744)	-125	NM_001321596	55070		NM_017996	ENSG00000140543	DET1	-	DET1 partner of COP1 E3 ubiquitin ligase	protein-coding
111715	chr19	4326851	4327640	+	0	NA	intron (NM_001013841, intron 7 of 12)	CpG-13380	11582	NM_001013841	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
151795	chr22	18193551	18194380	+	0	NA	intron (NR_136570, intron 4 of 11)	intron (NR_136570, intron 4 of 11)	11944	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
148668	chr21	6126951	6128300	+	0	NA	Intergenic	Intergenic	16494	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
46920	chr11	134269971	134270730	+	0	NA	Intergenic	Intergenic	-6029	NM_001080407	112937		NM_138416	ENSG00000166105	GLB1L3	-	galactosidase beta 1 like 3	protein-coding
141465	chr2	241066801	241067200	+	0	NA	intron (NM_001080437, intron 21 of 31)	intron (NM_001080437, intron 21 of 31)	35287	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
229226	chr9	114921021	114921280	+	0	NA	intron (NM_001244, intron 1 of 3)	intron (NM_001244, intron 1 of 3)	9441	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
136168	chr2	174392701	174393150	+	0	NA	intron (NM_004882, intron 1 of 9)	L2|LINE|L2	2787	NM_004882	9541		NM_004882	ENSG00000138433	CIR1	CIR	corepressor interacting with RBPJ, CIR1	protein-coding
199627	chr6	119742251	119742550	+	0	NA	intron (NR_134600, intron 2 of 3)	intron (NR_134600, intron 2 of 3)	192592	NR_134600	105377975		NR_134600		LOC105377975	-	uncharacterized LOC105377975	ncRNA
228936	chr9	113309151	113309550	+	0	NA	Intergenic	L1ME4b|LINE|L1	-5974	NM_001371236	138065		NM_145051	ENSG00000165188	RNF183	-	ring finger protein 183	protein-coding
215590	chr7	158871471	158871630	+	0	NA	exon (NM_018051, exon 3 of 25)	exon (NM_018051, exon 3 of 25)	14992	NM_001350917	55112		NM_018051	ENSG00000126870	DYNC2I1	CFAP163|DIC6|FAP163|SRPS6|SRTD8|WDR60	dynein 2 intermediate chain 1	protein-coding
105091	chr17	82120121	82120780	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-22214	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
214316	chr7	149260101	149260650	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-1821	NM_001195220	100289678		NM_001195220	ENSG00000204946	ZNF783	-	zinc finger protein 783	protein-coding
143747	chr20	32366551	32366850	+	0	NA	intron (NM_001164603, intron 2 of 3)	intron (NM_001164603, intron 2 of 3)	7635	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
175758	chr4	77763871	77764030	+	0	NA	intron (NM_144571, intron 4 of 11)	L1ME3E|LINE|L1	55114	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
130387	chr2	85312451	85312850	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	15339	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
82642	chr16	19116871	19117230	+	0	NA	non-coding (NR_028028, exon 2 of 2)	non-coding (NR_028028, exon 2 of 2)	3086	NM_001034841	162073		NM_001034841	ENSG00000205730	ITPRIPL2	D1C	ITPRIP like 2	protein-coding
200389	chr6	134288551	134289230	+	0	NA	intron (NM_001143676, intron 1 of 13)	intron (NM_001143676, intron 1 of 13)	29168	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
217369	chr8	28059971	28060230	+	0	NA	intron (NM_001010906, intron 8 of 18)	intron (NM_001010906, intron 8 of 18)	23836	NM_001010906	389643		NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC|SLIPGC	nuclear GTPase, germinal center associated	protein-coding
11162	chr1	87041321	87041580	+	0	NA	intron (NM_001134492, intron 1 of 4)	intron (NM_001134492, intron 1 of 4)	-88315	NR_026988	339524		NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
26681	chr10	22625551	22626050	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	88308	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
134889	chr2	148971601	148971830	+	0	NA	intron (NM_004522, intron 11 of 25)	intron (NM_004522, intron 11 of 25)	23840	NR_111932	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
204887	chr7	6055701	6055900	+	0	NA	intron (NM_014413, intron 1 of 14)	AluSp|SINE|Alu	3375	NM_014413	27102		NM_014413	ENSG00000086232	EIF2AK1	HCR|HRI|LEMSPAD|hHRI	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
166070	chr3	108837871	108838050	+	0	NA	intron (NM_016388, intron 2 of 5)	intron (NM_016388, intron 2 of 5)	15174	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
12566	chr1	108705371	108705930	+	0	NA	Intergenic	AluJr|SINE|Alu	-7258	NM_001144937	163479		NM_173532	ENSG00000143107	FNDC7	-	fibronectin type III domain containing 7	protein-coding
179320	chr4	180666201	180666400	+	0	NA	Intergenic	Intergenic	492849	NR_033918	728081		NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
118785	chr19	38397801	38398000	+	0	NA	non-coding (NR_073032, exon 6 of 6)	non-coding (NR_073032, exon 6 of 6)	-5235	NM_174905	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
197429	chr6	73649921	73650300	+	0	NA	intron (NM_001382631, intron 1 of 11)	AluJb|SINE|Alu	3882	NM_001382635	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
172961	chr4	3783951	3784050	+	0	NA	Intergenic	Intergenic	17615	NM_000683	152		NM_000683	ENSG00000184160	ADRA2C	ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR	adrenoceptor alpha 2C	protein-coding
150108	chr21	37454101	37454500	+	0	NA	intron (NM_101395, intron 3 of 12)	AluJo|SINE|Alu	34001	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
230030	chr9	127223201	127223400	+	0	NA	TTS (NM_001322324)	TTS (NM_001322324)	-40362	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
164931	chr3	71208321	71208780	+	0	NA	intron (NM_001012505, intron 5 of 6)	(TG)n|Simple_repeat|Simple_repeat	36527	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
185734	chr5	132076421	132077250	+	0	NA	TTS (NM_000758)	TTS (NM_000758)	3046	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
1405	chr1	2554601	2556000	+	0	NA	non-coding (NR_037844, exon 2 of 7)	non-coding (NR_037844, exon 2 of 7)	-1065	NM_001297605	8764		NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
223348	chr8	143845371	143845530	+	0	NA	Intergenic	AluJr|SINE|Alu	-4477	NM_178564	340371		NM_178564	ENSG00000185189	NRBP2	TRG16|pp9320	nuclear receptor binding protein 2	protein-coding
238548	chrX	153776221	153777380	+	0	NA	intron (NM_001163257, intron 29 of 36)	G-rich|Low_complexity|Low_complexity	-4201	NM_001170761	26576		NM_014370	ENSG00000184343	SRPK3	MSSK-1|MSSK1|STK23	SRSF protein kinase 3	protein-coding
19467	chr1	174966871	174967500	+	0	NA	intron (NM_001243764, intron 1 of 6)	AluJo|SINE|Alu	2407	NM_001243764	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
141776	chr2	242083701	242083900	+	0	NA	intron (NR_146651, intron 1 of 3)	L1PREC2|LINE|L1	338	NR_146651	105373979		NR_146651	ENSG00000232002	LINC01880	-	long intergenic non-protein coding RNA 1880	ncRNA
109574	chr19	899651	899750	+	0	NA	intron (NM_138774, intron 5 of 7)	CpG-12948	6216	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
48813	chr12	12070921	12071430	+	0	NA	promoter-TSS (NM_030766)	promoter-TSS (NM_030766)	236	NM_138723	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
129485	chr2	69604301	69604500	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	39338	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
74645	chr15	60844221	60845480	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	163281	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
9706	chr1	53105601	53105800	+	0	NA	intron (NM_001287595, intron 4 of 10)	(CCTGCCT)n|Simple_repeat|Simple_repeat	36938	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
186440	chr5	136080171	136081350	+	0	NA	promoter-TSS (NR_030583)	promoter-TSS (NR_030583)	-162	NR_030583	100126299		NR_030583	ENSG00000270123	VTRNA2-1	CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a	vault RNA 2-1	ncRNA
9534	chr1	51491421	51492250	+	0	NA	intron (NM_001981, intron 1 of 24)	intron (NM_001981, intron 1 of 24)	27431	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
47702	chr12	6440871	6441500	+	0	NA	intron (NR_015382, intron 5 of 5)	L2b|LINE|L2	-3770	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
184993	chr5	115070721	115071180	+	0	NA	Intergenic	Intergenic	98958	NM_001300759	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
79248	chr16	398751	399800	+	0	NA	intron (NM_001286433, intron 2 of 3)	intron (NM_001286433, intron 2 of 3)	1533	NM_001286440	4833		NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
200555	chr6	136270621	136271630	+	0	NA	intron (NM_001301038, intron 8 of 12)	intron (NM_001301038, intron 8 of 12)	18721	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
129618	chr2	70118871	70119480	+	0	NA	Intergenic	L2a|LINE|L2	6141	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
177611	chr4	121112551	121112850	+	0	NA	Intergenic	Intergenic	-40165	NM_024574	79625		NM_024574	ENSG00000173376	NDNF	C4orf31|HH25|NORD	neuron derived neurotrophic factor	protein-coding
58855	chr12	132985971	132987600	+	0	NA	5' UTR (NM_001330514, exon 1 of 5)	5' UTR (NM_001330514, exon 1 of 5)	418	NM_001330513	7574		NM_019591	ENSG00000198393	ZNF26	HEL-179|KOX20	zinc finger protein 26	protein-coding
103780	chr17	79004851	79004950	+	0	NA	intron (NM_001159772, intron 1 of 5)	intron (NM_001159772, intron 1 of 5)	4864	NM_001159772	124583		NM_138793	ENSG00000171302	CANT1	DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
45068	chr11	117061751	117061850	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	36628	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
233610	chrX	358771	359380	+	0	NA	intron (NM_013239, intron 2 of 12)	CpG	27832	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
206176	chr7	28120321	28120580	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-60007	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
215329	chr7	157358251	157358950	+	0	NA	exon (NM_058246, exon 2 of 10)	exon (NM_058246, exon 2 of 10)	21596	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
1095	chr1	2019071	2020300	+	0	NA	intron (NM_000815, intron 1 of 8)	CpG	340	NM_000815	2563		NM_000815	ENSG00000187730	GABRD	EIG10|EJM7|GABAARdelta|GEFSP5	gamma-aminobutyric acid type A receptor subunit delta	protein-coding
192867	chr6	27280171	27280400	+	0	NA	Intergenic	tRNA-Val-GTG|tRNA|tRNA	31947	NM_033482	94026		NM_033482	ENSG00000158553	POM121L2	POM121-L|POM121L	POM121 transmembrane nucleoporin like 2	protein-coding
133116	chr2	112652471	112652630	+	0	NA	intron (NM_005415, intron 4 of 10)	intron (NM_005415, intron 4 of 10)	6611	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
106670	chr18	23136721	23137380	+	0	NA	intron (NM_001100619, intron 1 of 9)	CpG	1287	NM_001100619	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
170912	chr3	194132301	194133200	+	0	NA	Intergenic	Intergenic	-3398	NM_005524	3280		NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
14223	chr1	143214171	143215000	+	0	NA	Intergenic	(ATCGAATGGA)n|Simple_repeat|Simple_repeat	208007	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
221369	chr8	123383751	123384050	+	0	NA	intron (NM_014109, intron 1 of 27)	AluSc|SINE|Alu	12547	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
127715	chr2	43388621	43388880	+	0	NA	intron (NM_022065, intron 29 of 37)	intron (NM_022065, intron 29 of 37)	161539	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
140574	chr2	233333601	233334580	+	0	NA	intron (NM_000541, intron 10 of 15)	intron (NM_000541, intron 10 of 15)	-20404	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
170283	chr3	184319151	184319580	+	0	NA	promoter-TSS (NM_004953)	promoter-TSS (NM_004953)	-898	NM_004953	1981		NM_004953	ENSG00000114867	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma 1	protein-coding
64729	chr14	34514951	34515250	+	0	NA	TTS (NM_018453)	TTS (NM_018453)	24601	NM_018453	55837		NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding
70137	chr14	100278401	100279050	+	0	NA	3' UTR (NM_003403, exon 5 of 5)	3' UTR (NM_003403, exon 5 of 5)	1368	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
21613	chr1	206568351	206569350	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	11686	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
2818	chr1	11028721	11029230	+	0	NA	intron (NM_006610, intron 10 of 10)	AluY|SINE|Alu	16321	NM_007375	23435		NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding
167381	chr3	128801551	128802050	+	0	NA	intron (NM_004637, intron 3 of 5)	L1MEg|LINE|L1	-45008	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
230854	chr9	129113101	129113850	+	0	NA	intron (NM_001193397, intron 1 of 9)	intron (NM_001193397, intron 1 of 9)	1787	NM_001193397	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
179599	chr4	185429651	185430100	+	0	NA	intron (NM_001346007, intron 1 of 4)	AluJr|SINE|Alu	541	NM_001346007	441054		NM_001114357	ENSG00000205129	CFAP96	C4orf47	cilia and flagella associated protein 96	protein-coding
104354	chr17	80991101	80992400	+	0	NA	promoter-TSS (NM_024591)	promoter-TSS (NM_024591)	-91	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
15836	chr1	151345471	151346150	+	0	NA	intron (NM_001379412, intron 4 of 10)	intron (NM_001379412, intron 4 of 10)	1046	NM_001379416	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
97689	chr17	44311371	44311730	+	0	NA	intron (NM_001144825, intron 1 of 10)	MIRb|SINE|MIR	2949	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
190737	chr6	371151	371250	+	0	NA	Intergenic	(AGCAGC)n|Simple_repeat|Simple_repeat	-20552	NR_046000	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
195469	chr6	37048671	37049250	+	0	NA	Intergenic	Intergenic	43305	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
165691	chr3	101938151	101938730	+	0	NA	Intergenic	Intergenic	-2419	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
139340	chr2	219596421	219596680	+	0	NA	Intergenic	AluSp|SINE|Alu	-1307	NM_052902	114790		NM_052902	ENSG00000144589	STK11IP	LIP1|LKB1IP|STK11IP1	serine/threonine kinase 11 interacting protein	protein-coding
12762	chr1	109631471	109631830	+	0	NA	3' UTR (NM_001368809, exon 19 of 19)	3' UTR (NM_001368809, exon 19 of 19)	7662	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
139875	chr2	230658471	230659200	+	0	NA	Intergenic	Intergenic	41694	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
56324	chr12	112813771	112814130	+	0	NA	intron (NM_001347955, intron 2 of 20)	(TG)n|Simple_repeat|Simple_repeat	22202	NM_001347954	22895		NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding
47348	chr12	1939901	1940400	+	0	NA	Intergenic	Intergenic	-3574	NR_036546	100271702		NR_036546	ENSG00000235049	LINC00940	-	long intergenic non-protein coding RNA 940	ncRNA
235071	chrX	40168601	40168800	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	8577	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
98535	chr17	47655651	47655750	+	0	NA	intron (NM_002265, intron 3 of 21)	intron (NM_002265, intron 3 of 21)	4635	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
227181	chr9	87758251	87758880	+	0	NA	Intergenic	Intergenic	-14350	NR_027917	392360		NM_001023564	ENSG00000290757	CTSL3P	CTSL3|HCTSL-s	cathepsin L family member 3, pseudogene	pseudo
204702	chr7	5521911	5524400	+	0	NA	intron (NR_126168, intron 3 of 3)	intron (NR_126168, intron 3 of 3)	7446	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
221063	chr8	116870521	116871200	+	0	NA	intron (NM_006265, intron 1 of 13)	intron (NM_006265, intron 1 of 13)	-3564	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
80745	chr16	3146851	3146950	+	0	NA	intron (NR_132322, intron 5 of 9)	AluSc8|SINE|Alu	2609	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
161169	chr3	39104751	39105880	+	0	NA	intron (NR_103866, intron 1 of 8)	intron (NR_103866, intron 1 of 8)	2312	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
199452	chr6	117601721	117603180	+	0	NA	promoter-TSS (NM_001017408)	promoter-TSS (NM_001017408)	61	NM_001017408	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
215023	chr7	152406321	152406580	+	0	NA	intron (NM_170606, intron 1 of 58)	AluJb|SINE|Alu	29553	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
88318	chr16	84277221	84277630	+	0	NA	Intergenic	Intergenic	-17453	NM_021197	58189		NM_021197	ENSG00000103175	WFDC1	PS20	WAP four-disulfide core domain 1	protein-coding
133634	chr2	126886201	126886680	+	0	NA	Intergenic	CpG	-12450	NM_001322244	101929926		NM_001322244	ENSG00000237524	TEX51	-	testis expressed 51	protein-coding
16605	chr1	155067251	155067350	+	0	NA	intron (NM_182690, intron 2 of 3)	intron (NM_182690, intron 2 of 3)	-3309	NR_040773	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
108987	chr18	79689801	79690200	+	0	NA	intron (NM_001202504, intron 1 of 12)	L1MC4|LINE|L1	8570	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
238989	chrX	155874701	155874900	+	0	NA	Intergenic	Intergenic	-6545	NM_001145149	6845		NM_005638	ENSG00000124333	VAMP7	SYBL1|TI-VAMP|TIVAMP|VAMP-7	vesicle associated membrane protein 7	protein-coding
95122	chr17	35003671	35004230	+	0	NA	TTS (NM_002311)	TTS (NM_002311)	23438	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
214425	chr7	149856371	149856820	+	0	NA	intron (NM_001099220, intron 5 of 7)	HAL1|LINE|L1	-16369	NM_001367792	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
124511	chr2	23921	24530	+	0	NA	Intergenic	Intergenic	22280	NM_001077710	642273		NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
88582	chr16	85569501	85570500	+	0	NA	Intergenic	Intergenic	-41409	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
162706	chr3	48997971	48998330	+	0	NA	intron (NM_177939, intron 2 of 8)	intron (NM_177939, intron 2 of 8)	7909	NM_177939	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
26389	chr10	16944771	16945530	+	0	NA	intron (NM_001081, intron 36 of 66)	intron (NM_001081, intron 36 of 66)	-127696	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
37966	chr11	34686021	34686280	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	43778	NM_001378046	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
101917	chr17	74459551	74459850	+	0	NA	Intergenic	Intergenic	-6673	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
57931	chr12	123601451	123602980	+	0	NA	exon (NM_020936, exon 1 of 14)	exon (NM_020936, exon 1 of 14)	116	NR_135105	57696		NM_020936	ENSG00000111364	DDX55	-	DEAD-box helicase 55	protein-coding
194365	chr6	32970001	32971000	+	0	NA	promoter-TSS (NM_001113182).6	promoter-TSS (NM_001113182).6	-430	NM_001113182	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
33284	chr10	114543951	114545050	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	-17587	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
231919	chr9	133104921	133105350	+	0	NA	intron (NM_001271775, intron 9 of 17)	intron (NM_001271775, intron 9 of 17)	16105	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
124836	chr2	7736471	7736630	+	0	NA	Intergenic	Intergenic	163105	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
24466	chr1	244002801	244003180	+	0	NA	intron (NR_033883, intron 2 of 11)	intron (NR_033883, intron 2 of 11)	-45949	NM_001278196	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
197204	chr6	63599601	63599800	+	0	NA	Intergenic	AluSx|SINE|Alu	27220	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
226538	chr9	72305051	72305550	+	0	NA	promoter-TSS (NR_110953)	promoter-TSS (NR_110953)	-136	NR_110952	100507540		NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
133733	chr2	127406551	127406880	+	0	NA	Intergenic	Intergenic	-11712	NM_001375603	5624		NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C, inactivator of coagulation factors Va and VIIIa	protein-coding
124497	chr19	58574971	58576240	+	0	NA	TTS (NR_027334)	TTS (NR_027334)	206	NR_026052	65996		NM_023939	ENSG00000293115	CENPBD2P	CENPBD1P1	CENPB DNA-binding domains containing 2, pseudogene	pseudo
159443	chr3	13869951	13870600	+	0	NA	intron (NM_004625, intron 2 of 3)	MLT1B|LTR|ERVL-MaLR	9796	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
138082	chr2	202034901	202036400	+	0	NA	exon (NM_003507, exon 1 of 1)	exon (NM_003507, exon 1 of 1)	1063	NM_003507	8324		NM_003507	ENSG00000155760	FZD7	FzE3	frizzled class receptor 7	protein-coding
56968	chr12	120537201	120537580	+	0	NA	intron (NM_001330474, intron 1 of 16)	AluSx|SINE|Alu	3034	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
163148	chr3	50148771	50148930	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-6208	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
55875	chr12	109544821	109545480	+	0	NA	Intergenic	Intergenic	28354	NR_038118	326625		NM_052845	ENSG00000139428	MMAB	ATR|CFAP23|cblB|cob	metabolism of cobalamin associated B	protein-coding
30379	chr10	78037571	78037730	+	0	NA	intron (NM_001142285, intron 4 of 4)	intron (NM_001142285, intron 4 of 4)	3787	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
25126	chr10	4059621	4060150	+	0	NA	intron (NR_120632, intron 1 of 3)	MER5B|DNA|hAT-Charlie	8159	NR_120632								
28103	chr10	43392651	43393000	+	0	NA	intron (NM_001098204, intron 3 of 3)	intron (NM_001098204, intron 3 of 3)	4006	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
17234	chr1	156293721	156293980	+	0	NA	intron (NM_144580, intron 4 of 5)	L2b|LINE|L2	1829	NM_144580	112770		NM_144580	ENSG00000198715	GLMP	C1orf85|NCU-G1|lnc-UCID	glycosylated lysosomal membrane protein	protein-coding
158675	chr3	5136271	5137430	+	0	NA	intron (NM_018184, intron 1 of 6)	intron (NM_018184, intron 1 of 6)	14558	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
134253	chr2	135245071	135245680	+	0	NA	intron (NM_032143, intron 12 of 20)	intron (NM_032143, intron 12 of 20)	108747	NR_145723	109616967		NR_145723	ENSG00000208308	SNORA40B	-	small nucleolar RNA, H/ACA box 40B	snoRNA
151478	chr21	46253601	46254830	+	0	NA	intron (NM_003906, intron 19 of 27)	intron (NM_003906, intron 19 of 27)	24984	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
131012	chr2	87853051	87853150	+	0	NA	intron (NM_001024457, intron 1 of 22).2	intron (NM_001024457, intron 1 of 22).2	-27252	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
115344	chr19	15187151	15187650	+	0	NA	intron (NM_000435, intron 10 of 32)	intron (NM_000435, intron 10 of 32)	-8050	NR_106853	102465476		NR_106853	ENSG00000275711	MIR6795	hsa-mir-6795	microRNA 6795	ncRNA
17452	chr1	156692671	156694000	+	0	NA	Intergenic	Intergenic	12248	NM_001878	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
192438	chr6	24894301	24894500	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	16334	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
94462	chr17	29260601	29261150	+	0	NA	3' UTR (NM_020772, exon 4 of 4)	3' UTR (NM_020772, exon 4 of 4)	14016	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
202559	chr6	158662921	158663380	+	0	NA	promoter-TSS (NM_001318745)	promoter-TSS (NM_001318745)	-253	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
132557	chr2	106269671	106270550	+	0	NA	Intergenic	CpG	-75809	NM_001377504	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
87843	chr16	75654271	75654430	+	0	NA	non-coding (NR_144545, exon 2 of 3)	non-coding (NR_144545, exon 2 of 3)	6577	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
38330	chr11	44309301	44310350	+	0	NA	exon (NM_021926, exon 1 of 4)	exon (NM_021926, exon 1 of 4)	314	NM_021926	60529		NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
128269	chr2	54581301	54581700	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	23106	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
113685	chr19	10401171	10401680	+	0	NA	intron (NM_007065, intron 1 of 7)	intron (NM_007065, intron 1 of 7)	2113	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
173212	chr4	6889701	6889900	+	0	NA	Intergenic	Intergenic	-19644	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
3752	chr1	16656601	16656880	+	0	NA	Intergenic	Intergenic	10208	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
93835	chr17	20966971	20967200	+	0	NA	intron (NR_160717, intron 4 of 4)	MLT1E2|LTR|ERVL-MaLR	28519	NR_160722	339260		NR_123730	ENSG00000233098	LOC339260	-	uncharacterized LOC339260	ncRNA
92355	chr17	8185121	8187100	+	0	NA	promoter-TSS (NR_039746)	promoter-TSS (NR_039746)	-835	NR_039746	100616406		NR_039746	ENSG00000283160	MIR4521	mir-4521	microRNA 4521	ncRNA
59586	chr13	27478301	27478500	+	0	NA	Intergenic	Intergenic	-27798	NM_001166263	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
229142	chr9	114483571	114483730	+	0	NA	intron (NM_015404, intron 1 of 11)	MIR3|SINE|MIR	19565	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
170698	chr3	187890401	187890750	+	0	NA	Intergenic	L1PA2|LINE|L1	85832	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
173983	chr4	26179071	26179430	+	0	NA	intron (NM_001374401, intron 1 of 11)	intron (NM_001374401, intron 1 of 11)	15792	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
62785	chr13	108895321	108895580	+	0	NA	intron (NM_015011, intron 14 of 34)	intron (NM_015011, intron 14 of 34)	265839	NM_001198950	23026		NM_015011	ENSG00000041515	MYO16	MYAP3|MYR8|Myo16b|NYAP3|PPP1R107	myosin XVI	protein-coding
194607	chr6	33521051	33521230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	59136	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
224206	chr9	5531401	5532050	+	0	NA	intron (NM_025239, intron 2 of 6)	intron (NM_025239, intron 2 of 6)	21194	NM_025239	80380		NM_025239	ENSG00000197646	PDCD1LG2	B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2	programmed cell death 1 ligand 2	protein-coding
191087	chr6	3745921	3746180	+	0	NA	intron (NM_183373, intron 1 of 4)	intron (NM_183373, intron 1 of 4)	5663	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
46422	chr11	126467971	126468330	+	0	NA	intron (NM_001161707, intron 5 of 13)	intron (NM_001161707, intron 5 of 13)	62063	NM_001254759	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
125430	chr2	11805921	11806180	+	0	NA	intron (NM_145693, intron 16 of 19)	intron (NM_145693, intron 16 of 19)	30936	NR_036226	100422996		NR_036226	ENSG00000265172	MIR4262	-	microRNA 4262	ncRNA
206092	chr7	27193801	27194030	+	0	NA	TTS (NM_000522)	TTS (NM_000522)	6176	NM_000522	3209		NM_000522	ENSG00000106031	HOXA13	HOX1|HOX1J	homeobox A13	protein-coding
30177	chr10	74227571	74228400	+	0	NA	intron (NM_001369123, intron 3 of 9)	AluJr|SINE|Alu	51222	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
146512	chr20	49910251	49911380	+	0	NA	intron (NM_006038, intron 1 of 2)	intron (NM_006038, intron 1 of 2)	2924	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
103852	chr17	79716301	79716700	+	0	NA	Intergenic	Intergenic	9234	NR_109783	100652929		NR_109783	ENSG00000267719	LINC02078	HP09025	long intergenic non-protein coding RNA 2078	ncRNA
98114	chr17	45646501	45646700	+	0	NA	TTS (NR_138258)	TTS (NR_138258)	24692	NM_001303016	104909134		NM_001256299	ENSG00000263715	LINC02210-CRHR1	CRHR1-IT1-CRHR1|MGC57346-CRHR1	LINC02210-CRHR1 readthrough	protein-coding
207759	chr7	50092651	50093630	+	0	NA	exon (NM_007009, exon 1 of 8)	exon (NM_007009, exon 1 of 8)	106	NM_001159878	11055		NM_007009	ENSG00000042813	ZPBP	SPGF66|ZPBP1	zona pellucida binding protein	protein-coding
168201	chr3	141229501	141230330	+	0	NA	Intergenic	LTR81C|LTR|Gypsy	-1910	NM_152282	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
83882	chr16	28946871	28947230	+	0	NA	Intergenic	Intergenic	-3947	NM_032815	84901		NM_032815	ENSG00000176953	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T cells 2 interacting protein	protein-coding
153498	chr22	26485201	26485430	+	0	NA	intron (NM_001013694, intron 1 of 6)	intron (NM_001013694, intron 1 of 6)	1438	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
77608	chr15	85329571	85330450	+	0	NA	Intergenic	Intergenic	-50586	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
113418	chr19	9674371	9676730	+	0	NA	promoter-TSS (NM_001130031)	promoter-TSS (NM_001130031)	-450	NM_001130032	54811		NM_017656	ENSG00000171466	ZNF562	-	zinc finger protein 562	protein-coding
137757	chr2	198042001	198042930	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	237872	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
143768	chr20	32406301	32406500	+	0	NA	intron (NM_015338, intron 3 of 11)	AluJb|SINE|Alu	47335	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
169193	chr3	156727871	156728180	+	0	NA	Intergenic	L2a|LINE|L2	51361	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
11908	chr1	93350421	93350700	+	0	NA	intron (NM_001938, intron 1 of 2)	intron (NM_001938, intron 1 of 2)	4653	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
56094	chr12	110693671	110694030	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-4073	NM_001256413	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
174300	chr4	38509251	38510530	+	0	NA	non-coding (NR_149076, exon 1 of 3)	non-coding (NR_149076, exon 1 of 3)	123	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
229099	chr9	114380751	114381490	+	0	NA	exon (NM_001317950, exon 2 of 22)	exon (NM_001317950, exon 2 of 22)	6862	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
194957	chr6	35297371	35298650	+	0	NA	intron (NM_022047, intron 1 of 10)	intron (NM_022047, intron 1 of 10)	192	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
198017	chr6	90122071	90122430	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	174593	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
136147	chr2	174325951	174327850	+	0	NA	non-coding (NR_038897, exon 1 of 3)	non-coding (NR_038897, exon 1 of 3)	873	NR_038897	285084		NR_038897	ENSG00000231453	LINC01305	-	long intergenic non-protein coding RNA 1305	ncRNA
148647	chr21	6093271	6094080	+	0	NA	Intergenic	CpG	-2010	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
206149	chr7	27840171	27840930	+	0	NA	intron (NM_175061, intron 4 of 4)	intron (NM_175061, intron 4 of 4)	100455	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
176974	chr4	104758571	104758930	+	0	NA	Intergenic	LTR40a|LTR|ERVL	-263856	NM_025212	80319		NM_025212	ENSG00000168772	CXXC4	IDAX	CXXC finger protein 4	protein-coding
121101	chr19	45925121	45925380	+	0	NA	Intergenic	Intergenic	-10472	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
111154	chr19	3304901	3305730	+	0	NA	Intergenic	L2b|LINE|L2	-54315	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
185082	chr5	118974151	118974630	+	0	NA	promoter-TSS (NR_036052).5	promoter-TSS (NR_036052).5	-196	NR_036262	100422885		NR_036262	ENSG00000283498	MIR1244-2	-	microRNA 1244-2	ncRNA
25058	chr10	3789001	3789200	+	0	NA	Intergenic	Intergenic	-3819	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
120519	chr19	44847851	44848780	+	0	NA	intron (NM_002856, intron 1 of 5)	MIRb|SINE|MIR	2018	NM_002856	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
106999	chr18	32045501	32045700	+	0	NA	intron (NM_017831, intron 3 of 5)	intron (NM_017831, intron 3 of 5)	26775	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
44305	chr11	102351401	102351750	+	0	NA	intron (NM_001256166, intron 3 of 8)	AluSx|SINE|Alu	4201	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
236997	chrX	101658451	101659600	+	0	NA	intron (NM_014782, intron 2 of 4)	intron (NM_014782, intron 2 of 4)	825	NM_001282231	9823		NM_014782	ENSG00000184867	ARMCX2	ALEX2|GASP9	armadillo repeat containing X-linked 2	protein-coding
26187	chr10	14541171	14541630	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	-2858	NM_001320740	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
48449	chr12	9732901	9733380	+	0	NA	exon (NM_001267701, exon 1 of 3)	exon (NM_001267701, exon 1 of 3)	159	NM_001267701	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
161010	chr3	37453421	37453880	+	0	NA	intron (NM_002207, intron 1 of 27)	intron (NM_002207, intron 1 of 27)	1509	NM_002207	3680		NM_002207	ENSG00000144668	ITGA9	ALPHA-RLC|ITGA4L|RLC	integrin subunit alpha 9	protein-coding
51690	chr12	53103811	53105750	+	0	NA	intron (NM_003578, intron 2 of 14)	intron (NM_003578, intron 2 of 14)	1294	NM_003578	8435		NM_003578	ENSG00000167780	SOAT2	ACACT2|ACAT2|ARGP2	sterol O-acyltransferase 2	protein-coding
31227	chr10	91800571	91801000	+	0	NA	intron (NM_025235, intron 1 of 26)	intron (NM_025235, intron 1 of 26)	2359	NM_025235	80351		NM_025235	ENSG00000107854	TNKS2	ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6	tankyrase 2	protein-coding
129992	chr2	74033821	74034580	+	0	NA	intron (NM_001366022, intron 2 of 10)	intron (NM_001366022, intron 2 of 10)	31508	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
84577	chr16	30632501	30632880	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18088	NM_001320464	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
141749	chr2	241896321	241897330	+	0	NA	intron (NM_001382370, intron 2 of 2)	intron (NM_001382370, intron 2 of 2)	2315	NM_001382370	285095		NM_001382368	ENSG00000216921	FAM240C	-	family with sequence similarity 240 member C	protein-coding
1769	chr1	6031701	6031900	+	0	NA	intron (NM_172130, intron 1 of 14)	AluJb|SINE|Alu	-2888	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
75350	chr15	65514251	65514550	+	0	NA	intron (NR_135485, intron 1 of 20)	intron (NR_135485, intron 1 of 20)	2874	NR_135486	54878		NM_017743	ENSG00000074603	DPP8	DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141	dipeptidyl peptidase 8	protein-coding
7199	chr1	32281171	32281530	+	0	NA	intron (NM_001042771, intron 12 of 12)	AluJr|SINE|Alu	7239	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
32550	chr10	103278871	103279100	+	0	NA	intron (NM_032727, intron 1 of 2)	intron (NM_032727, intron 1 of 2)	1847	NM_032727	9118		NM_032727	ENSG00000148798	INA	NEF5|NF-66|NF66|TXBP-1	internexin neuronal intermediate filament protein alpha	protein-coding
116775	chr19	18504671	18504830	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	17320	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
14706	chr1	145930471	145931130	+	0	NA	intron (NR_147182, intron 2 of 2)	AluJr|SINE|Alu	-3316	NM_005105	9939		NM_005105	ENSG00000265241	RBM8A	BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1	RNA binding motif protein 8A	protein-coding
168080	chr3	138180551	138181230	+	0	NA	Intergenic	Intergenic	-5969	NM_016216	51163		NM_016216	ENSG00000138231	DBR1	XGIP	debranching RNA lariats 1	protein-coding
4374	chr1	20726001	20726930	+	0	NA	intron (NM_001103160, intron 3 of 8)	MIRb|SINE|MIR	6238	NM_001103160	400745		NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
167506	chr3	129233671	129233830	+	0	NA	Intergenic	L2|LINE|L2	-15856	NM_016128	22820		NM_016128	ENSG00000181789	COPG1	COPG	COPI coat complex subunit gamma 1	protein-coding
71417	chr14	105567051	105567350	+	0	NA	Intergenic	Intergenic	35345	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
51665	chr12	53059251	53059350	+	0	NA	exon (NM_015319, exon 18 of 29)	exon (NM_015319, exon 18 of 29)	2356	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
150824	chr21	44013701	44014180	+	0	NA	intron (NM_003274, intron 1 of 22)	intron (NM_003274, intron 1 of 22)	1631	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
78370	chr15	91469251	91470700	+	0	NA	intron (NR_110106, intron 1 of 3)	MIRb|SINE|MIR	6636	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
199920	chr6	127881801	127882200	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	19081	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
198230	chr6	98847721	98848430	+	0	NA	Intergenic	CpG	13501	NM_005604	5454		NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
122515	chr19	49611751	49612880	+	0	NA	intron (NM_020719, intron 6 of 13)	intron (NM_020719, intron 6 of 13)	21133	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
167887	chr3	136137671	136137830	+	0	NA	intron (NM_002718, intron 13 of 13)	AluY|SINE|Alu	56718	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
85962	chr16	57281851	57282250	+	0	NA	intron (NM_015993, intron 1 of 3)	intron (NM_015993, intron 1 of 3)	2622	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
6173	chr1	27429821	27430080	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	37328	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
128137	chr2	48346071	48346430	+	0	NA	exon (NM_001375447, exon 2 of 6)	exon (NM_001375447, exon 2 of 6)	31568	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
105873	chr18	3239021	3239480	+	0	NA	Intergenic	L2a|LINE|L2	-8232	NM_001303048	10627		NM_006471	ENSG00000101608	MYL12A	HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B	myosin light chain 12A	protein-coding
207931	chr7	50781271	50781700	+	0	NA	intron (NM_001350814, intron 1 of 18)	intron (NM_001350814, intron 1 of 18)	1411	NM_001350814	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
192361	chr6	24664971	24665530	+	0	NA	intron (NM_016614, intron 2 of 6)	MLT1O|LTR|ERVL-MaLR	1649	NM_016614	51567		NM_016614	ENSG00000111802	TDP2	AD022|EAP2|EAPII|TTRAP|dJ30M3.3|hTDP2	tyrosyl-DNA phosphodiesterase 2	protein-coding
43513	chr11	81648001	81648230	+	0	NA	Intergenic	Intergenic	242721	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
52039	chr12	54007701	54008130	+	0	NA	Intergenic	Intergenic	-1070	NM_022658	3224		NM_022658	ENSG00000037965	HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
36809	chr11	9662271	9662680	+	0	NA	Intergenic	Intergenic	-1602	NM_001297714	23075		NM_015055	ENSG00000133789	SWAP70	HSPC321|SWAP-70	switching B cell complex subunit SWAP70	protein-coding
106124	chr18	9211851	9212250	+	0	NA	intron (NM_001204056, intron 5 of 11)	intron (NM_001204056, intron 5 of 11)	74487	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
50162	chr12	45917951	45918250	+	0	NA	Intergenic	AluYk4|SINE|Alu	72474	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
45994	chr11	121513221	121513600	+	0	NA	intron (NM_003105, intron 7 of 47)	intron (NM_003105, intron 7 of 47)	-31621	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
91604	chr17	5307171	5307980	+	0	NA	intron (NM_001291581, intron 1 of 16)	intron (NM_001291581, intron 1 of 16)	25291	NM_001083585	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
28078	chr10	43355721	43356180	+	0	NA	Intergenic	LTR8|LTR|ERV1	-15686	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
119245	chr19	39482101	39482300	+	0	NA	intron (NM_001329559, intron 2 of 9)	intron (NM_001329559, intron 2 of 9)	1362	NM_001001563	92609		NM_001001563	ENSG00000105197	TIMM50	MGCA9|TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
79951	chr16	1766171	1766330	+	0	NA	exon (NM_001040439, exon 21 of 31)	exon (NM_001040439, exon 21 of 31)	5459	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
70339	chr14	101848321	101849030	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	38812	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
232473	chr9	136204821	136205480	+	0	NA	promoter-TSS (NM_178138)	promoter-TSS (NM_178138)	-22	NM_178138	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
44456	chr11	104956701	104956900	+	0	NA	intron (NM_033306, intron 1 of 9)	intron (NM_033306, intron 1 of 9)	11774	NM_001225	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
212421	chr7	128270971	128271130	+	0	NA	Intergenic	CpG	29772	NM_000230	3952		NM_000230	ENSG00000174697	LEP	LEPD|OB|OBS	leptin	protein-coding
53555	chr12	67555251	67555830	+	0	NA	intron (NR_103861, intron 2 of 2)	L1PA7|LINE|L1	35458	NR_103861	100507175		NR_103861	ENSG00000203585	LINC02408	-	long intergenic non-protein coding RNA 2408	ncRNA
228705	chr9	109012101	109012700	+	0	NA	intron (NM_001286974, intron 1 of 18)	intron (NM_001286974, intron 1 of 18)	1099	NM_001286974	8727		NM_003798	ENSG00000119326	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin alpha like 1	protein-coding
22402	chr1	219864051	219864150	+	0	NA	Intergenic	L1PA3|LINE|L1	63537	NR_165031								
87419	chr16	70681121	70681600	+	0	NA	intron (NM_138383, intron 1 of 14)	intron (NM_138383, intron 1 of 14)	4693	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
29707	chr10	72069171	72069550	+	0	NA	intron (NM_014767, intron 6 of 11)	intron (NM_014767, intron 6 of 11)	19191	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
222883	chr8	142775121	142775580	+	0	NA	exon (NM_001356370, exon 4 of 4)	exon (NM_001356370, exon 4 of 4)	1181	NM_001356370	66004		NM_177457	ENSG00000180155	LYNX1	-	Ly6/neurotoxin 1	protein-coding
225414	chr9	35059151	35059930	+	0	NA	exon (NM_007126, exon 14 of 17)	exon (NM_007126, exon 14 of 17)	12768	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
39616	chr11	61396351	61396850	+	0	NA	intron (NM_016499, intron 3 of 4)	AluSq2|SINE|Alu	4013	NM_001173990	51259		NM_016499	ENSG00000187049	TMEM216	HSPC244	transmembrane protein 216	protein-coding
186054	chr5	134069901	134070230	+	0	NA	Intergenic	MER41A|LTR|ERV1	-44616	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
171563	chr3	196939771	196940300	+	0	NA	non-coding (NR_046630, exon 1 of 3)	non-coding (NR_046630, exon 1 of 3)	158	NR_046630	100874001		NR_046630		NCBP2-AS1	-	NCBP2 antisense RNA 1	ncRNA
198384	chr6	105591071	105591400	+	0	NA	Intergenic	Intergenic	-188153	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
169342	chr3	160163371	160163530	+	0	NA	intron (NR_108088, intron 3 of 9)	intron (NR_108088, intron 3 of 9)	43642	NR_108088	101928376		NR_108088	ENSG00000244040	IL12A-AS1	ILAS1-AS1	IL12A antisense RNA 1	ncRNA
96000	chr17	39208071	39208590	+	0	NA	Intergenic	Intergenic	8007	NM_001330200	6143		NM_000981	ENSG00000108298	RPL19	L19|eL19	ribosomal protein L19	protein-coding
209526	chr7	77112571	77113000	+	0	NA	intron (NR_146190, intron 3 of 6)	intron (NR_146190, intron 3 of 6)	9504	NR_146190	641808		NR_146190		FAM185BP	FAM185B	family with sequence similarity 185, member A pseudogene	pseudo
197810	chr6	87714421	87714680	+	0	NA	Intergenic	Intergenic	-12317	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
181826	chr5	52801501	52801950	+	0	NA	exon (NM_015946, exon 3 of 3)	exon (NM_015946, exon 3 of 3)	13809	NM_015946	53918		NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota mRNA surveillance and ribosome rescue factor	protein-coding
170666	chr3	187678971	187679200	+	0	NA	Intergenic	Intergenic	-8691	NM_001048	6750		NM_001048	ENSG00000157005	SST	SMST|SST1	somatostatin	protein-coding
200632	chr6	136824121	136824650	+	0	NA	intron (NM_000288, intron 1 of 9)	AluJo|SINE|Alu	1793	NM_000288	5191		NM_000288	ENSG00000112357	PEX7	PBD9B|PTS2R|RCDP1|RD	peroxisomal biogenesis factor 7	protein-coding
153466	chr22	25403821	25404150	+	0	NA	intron (NM_001135772, intron 1 of 6)	intron (NM_001135772, intron 1 of 6)	1423	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
24280	chr1	236508451	236509150	+	0	NA	Intergenic	L1P3|LINE|L1	-9414	NM_201545	3964		NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
191314	chr6	6751471	6751830	+	0	NA	Intergenic	Intergenic	-128824	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
143796	chr20	32456101	32456300	+	0	NA	exon (NM_001256798, exon 6 of 11)	exon (NM_001256798, exon 6 of 11)	27290	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
161237	chr3	39222371	39223130	+	0	NA	Intergenic	L1MB8|LINE|L1	-30155	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
229393	chr9	121182051	121182150	+	0	NA	intron (NM_016322, intron 7 of 7)	intron (NM_016322, intron 7 of 7)	-19383	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
176038	chr4	82369551	82370430	+	0	NA	intron (NM_001003810, intron 1 of 6)	AluSp|SINE|Alu	4001	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
92406	chr17	8374551	8374650	+	0	NA	intron (NM_001304947, intron 1 of 1)	SVA_B|Retroposon|SVA	2104	NM_001304947	124751		NM_213597	ENSG00000184619	KRBA2	-	KRAB-A domain containing 2	protein-coding
76746	chr15	76340961	76341880	+	0	NA	intron (NM_145805, intron 5 of 5)	CpG-8458	4647	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
165538	chr3	100710501	100711480	+	0	NA	intron (NM_006070, intron 1 of 7)	intron (NM_006070, intron 1 of 7)	1448	NM_001195478	10342		NM_006070	ENSG00000114354	TFG	HMSNP|SPG57|TF6|TRKT3	trafficking from ER to golgi regulator	protein-coding
103956	chr17	79921271	79922130	+	0	NA	intron (NR_110850, intron 3 of 5)	intron (NR_110850, intron 3 of 5)	2343	NR_110851	101928738		NR_110851	ENSG00000262188	LINC01978	-	long intergenic non-protein coding RNA 1978	ncRNA
144070	chr20	33681771	33682580	+	0	NA	intron (NM_005225, intron 1 of 6)	L2c|LINE|L2	4210	NM_005225	1869		NM_005225	ENSG00000101412	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
181044	chr5	35926121	35926700	+	0	NA	intron (NM_144647, intron 1 of 4)	intron (NM_144647, intron 1 of 4)	12212	NM_001042625	133690		NM_144647	ENSG00000152611	CAPSL	-	calcyphosine like	protein-coding
65384	chr14	50739671	50740680	+	0	NA	intron (NM_020921, intron 25 of 30)	intron (NM_020921, intron 25 of 30)	-71869	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
160472	chr3	30524501	30524700	+	0	NA	intron (NR_147054, intron 1 of 2)	intron (NR_147054, intron 1 of 2)	5732	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
24481	chr1	244239601	244239800	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-112935	NM_001276348	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
127639	chr2	43138371	43138800	+	0	NA	Intergenic	Intergenic	-36140	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
63828	chr14	21478851	21479050	+	0	NA	intron (NM_014828, intron 2 of 8)	AluSz|SINE|Alu	1755	NM_001303523	9878		NM_014828	ENSG00000092203	TOX4	C14orf92|KIAA0737|LCP1|MIG7	TOX high mobility group box family member 4	protein-coding
146931	chr20	51769271	51769430	+	0	NA	promoter-TSS (NM_006045)	promoter-TSS (NM_006045)	-960	NM_006045	10079		NM_006045	ENSG00000054793	ATP9A	ATPIIA|NEDGBA	ATPase phospholipid transporting 9A (putative)	protein-coding
37981	chr11	34999371	34999730	+	0	NA	Intergenic	Intergenic	57713	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
236432	chrX	71416371	71416600	+	0	NA	intron (NR_104387, intron 28 of 39)	intron (NR_104387, intron 28 of 39)	50128	NR_104388	6872		NM_004606	ENSG00000147133	TAF1	BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|MRXS33|N-TAF1|NSCL2|OF|P250|TAF(II)250|TAF2A|TAFII-250|TAFII250|XDP	TATA-box binding protein associated factor 1	protein-coding
53234	chr12	62347971	62348200	+	0	NA	intron (NM_001351164, intron 6 of 21)	AluJb|SINE|Alu	87681	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
95754	chr17	38604551	38605150	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	1102	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
18641	chr1	166877771	166877930	+	0	NA	Intergenic	Intergenic	-1586	NM_053053	117143		NM_053053	ENSG00000152382	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
22505	chr1	221768751	221768850	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	-26624	NR_111940	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
216129	chr8	11449651	11449950	+	0	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	16953	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
63121	chr13	113365251	113365650	+	0	NA	Intergenic	Intergenic	-1302	NM_001286733	79774		NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
89663	chr16	89363451	89364550	+	0	NA	intron (NR_045839, intron 2 of 9)	AluJr|SINE|Alu	43548	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
187075	chr5	140173101	140173950	+	0	NA	Intergenic	Intergenic	-1663	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
205376	chr7	14013371	14013530	+	0	NA	Intergenic	MIRb|SINE|MIR	-22025	NM_001163148	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
103606	chr17	78723871	78724380	+	0	NA	promoter-TSS (NM_001292018)	promoter-TSS (NM_001292018)	-375	NM_001292018	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
156930	chr22	42300751	42301580	+	0	NA	Intergenic	Intergenic	-17238	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
220031	chr8	91048121	91048750	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-7576	NM_018710	55529		NM_018710	ENSG00000155099	PIP4P2	TMEM55A	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2	protein-coding
53452	chr12	65278601	65279250	+	0	NA	promoter-TSS (NM_001193461)	promoter-TSS (NM_001193461)	-62	NM_001193461	253827		NM_198080	ENSG00000174099	MSRB3	DFNB74	methionine sulfoxide reductase B3	protein-coding
203100	chr6	166418871	166419980	+	0	NA	intron (NM_021135, intron 18 of 20)	MIRb|SINE|MIR	-36485	NR_164831	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
210351	chr7	99561321	99562050	+	0	NA	intron (NM_138494, intron 2 of 2)	intron (NM_138494, intron 2 of 2)	2851	NM_001363334	79027		NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding
129437	chr2	69476771	69476930	+	0	NA	intron (NM_001371575, intron 20 of 20)	intron (NM_001371575, intron 20 of 20)	-37283	NM_001374284	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
142229	chr20	3091851	3091950	+	0	NA	Intergenic	Intergenic	-7176	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
220304	chr8	98169971	98170400	+	0	NA	Intergenic	Intergenic	52345	NM_015029	10940		NM_015029	ENSG00000104356	POP1	ANXD2	POP1 homolog, ribonuclease P/MRP subunit	protein-coding
137328	chr2	196089421	196089780	+	0	NA	Intergenic	L1PA5|LINE|L1	-20763	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
154071	chr22	30740151	30740250	+	0	NA	intron (NM_030758, intron 1 of 13)	LTR8|LTR|ERV1	8643	NR_036171	100422912		NR_036171	ENSG00000264661	MIR3200	mir-3200	microRNA 3200	ncRNA
21533	chr1	205824171	205824330	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-11052	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
30925	chr10	87213221	87213700	+	0	NA	Intergenic	Intergenic	-11988	NM_001099338	728118		NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
23364	chr1	228157421	228158330	+	0	NA	exon (NM_020435, exon 2 of 2)	exon (NM_020435, exon 2 of 2)	6973	NR_103539	574432		NR_103539	ENSG00000203684	IBA57-DT	C1orf148|IBA57-AS1	IBA57 divergent transcript	ncRNA
190785	chr6	660001	660500	+	0	NA	intron (NR_073064, intron 2 of 29)	L1PB1|LINE|L1	-3286	NM_148959	135458		NM_148959	ENSG00000188996	HUS1B	-	HUS1 checkpoint clamp component B	protein-coding
129896	chr2	73212371	73212980	+	0	NA	TTS (NM_001134462)	TTS (NM_001134462)	-1570	NM_006062	10322		NM_006062	ENSG00000135632	SMYD5	NN8-4AG|RAI15|RRG1|ZMYND23	SMYD family member 5	protein-coding
88296	chr16	84087571	84087980	+	0	NA	intron (NM_003791, intron 8 of 22)	intron (NM_003791, intron 8 of 22)	29167	NM_003791	8720		NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SEDKF|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
91498	chr17	4908551	4909480	+	0	NA	Intergenic	Intergenic	-5917	NM_000080	1145		NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1A1|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|FIM1|FIMG|FIMG1|MGI|SCCMS	cholinergic receptor nicotinic epsilon subunit	protein-coding
58380	chr12	131827951	131828640	+	0	NA	promoter-TSS (NM_016155)	promoter-TSS (NM_016155)	-98	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
36269	chr11	3791771	3792500	+	0	NA	intron (NR_157590, intron 1 of 31)	AluY|SINE|Alu	5411	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
37792	chr11	32466251	32466350	+	0	NA	Intergenic	Intergenic	30261	NR_120546	51352		NM_015855	ENSG00000183242	WT1-AS	WIT-1|WIT1|WT1-AS1|WT1AS	WT1 antisense RNA	ncRNA
160565	chr3	30691201	30692200	+	0	NA	3' UTR (NM_003242, exon 7 of 7)	3' UTR (NM_003242, exon 7 of 7)	85099	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
91105	chr17	3663901	3664900	+	0	NA	intron (NR_037928, intron 13 of 14)	intron (NR_037928, intron 13 of 14)	4178	NM_014604	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
124505	chr19	58586271	58586680	+	0	NA	Intergenic	Intergenic	11076	NR_026052	65996		NM_023939	ENSG00000293115	CENPBD2P	CENPBD1P1	CENPB DNA-binding domains containing 2, pseudogene	pseudo
217302	chr8	27382151	27382850	+	0	NA	intron (NM_173174, intron 6 of 35)	AluJr|SINE|Alu	-50870	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
122386	chr19	49417171	49417330	+	0	NA	exon (NM_144688, exon 19 of 20)	exon (NM_144688, exon 19 of 20)	6191	NM_178449	113091		NM_178449	ENSG00000142538	PTH2	TIP39	parathyroid hormone 2	protein-coding
13931	chr1	120171121	120171200	+	0	NA	intron (NM_004892, intron 1 of 4)	MER5B|DNA|hAT-Charlie	5360	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
239045	chrY	7241251	7241550	+	0	NA	Intergenic	AluJr|SINE|Alu	-32572	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
34025	chr10	124713671	124714200	+	0	NA	non-coding (NR_120630, exon 3 of 3)	non-coding (NR_120630, exon 3 of 3)	9907	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
92133	chr17	7622901	7623100	+	0	NA	intron (NM_001289114, intron 1 of 7)	AluY|SINE|Alu	4821	NM_133491	112483		NM_133491	ENSG00000141504	SAT2	SSAT-2|SSAT2	spermidine/spermine N1-acetyltransferase family member 2	protein-coding
46525	chr11	128456171	128457200	+	0	NA	Intergenic	Intergenic	65625	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
104182	chr17	80425071	80425450	+	0	NA	intron (NM_001164638, intron 5 of 7)	intron (NM_001164638, intron 5 of 7)	5842	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
116144	chr19	17378771	17378930	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1508	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
192789	chr6	26554701	26555680	+	0	NA	Intergenic	Intergenic	-14134	NR_134611	105374988		NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
129868	chr2	73074051	73074730	+	0	NA	3' UTR (NM_015470, exon 5 of 5)	3' UTR (NM_015470, exon 5 of 5)	-2678	NM_001371740	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
135841	chr2	170716751	170717900	+	0	NA	exon (NM_001003845, exon 2 of 2)	exon (NM_001003845, exon 2 of 2)	1988	NM_001003845	389058		NM_001003845	ENSG00000204335	SP5	-	Sp5 transcription factor	protein-coding
177861	chr4	128285101	128285630	+	0	NA	intron (NM_006320, intron 1 of 2)	AluSx1|SINE|Alu	2448	NM_006320	10424		NM_006320	ENSG00000164040	PGRMC2	DG6|PMBP	progesterone receptor membrane component 2	protein-coding
168493	chr3	143443021	143443300	+	0	NA	intron (NM_173653, intron 12 of 15)	intron (NM_173653, intron 12 of 15)	100914	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
12996	chr1	110992371	110992600	+	0	NA	Intergenic	L1PB1|LINE|L1	-28541	NM_001006945	55791		NM_018372	ENSG00000121931	LRIF1	C1orf103|FSHD3|HBiX1|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
179708	chr4	190181251	190181700	+	0	NA	intron (NR_137167, intron 2 of 5).2	BSR/Beta|Satellite|Satellite	7701	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
117754	chr19	29670571	29670730	+	0	NA	intron (NM_024310, intron 1 of 1)	L1MB2|LINE|L1	5189	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
174539	chr4	40197621	40198530	+	0	NA	intron (NM_001278365, intron 2 of 3)	intron (NM_001278365, intron 2 of 3)	1044	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
127701	chr2	43221801	43222850	+	0	NA	TTS (NM_006887)	TTS (NM_006887)	4281	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
162569	chr3	48660401	48660800	+	0	NA	exon (NM_001407, exon 1 of 35)	exon (NM_001407, exon 1 of 35)	2286	NM_001407	1951		NM_001407	ENSG00000008300	CELSR3	ADGRC3|CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1	cadherin EGF LAG seven-pass G-type receptor 3	protein-coding
147092	chr20	53847071	53847630	+	0	NA	Intergenic	MIRb|SINE|MIR	28359	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
207512	chr7	44797301	44799250	+	0	NA	intron (NM_021130, intron 1 of 4)	intron (NM_021130, intron 1 of 4)	1594	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
180177	chr5	1471151	1471850	+	0	NA	intron (NM_024830, intron 11 of 13)	intron (NM_024830, intron 11 of 13)	-26060	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
202441	chr6	157999271	157999830	+	0	NA	intron (NM_003898, intron 1 of 26)	intron (NM_003898, intron 1 of 26)	-1557	NR_046796	100874300		NR_046796	ENSG00000233496	SYNJ2-IT1	-	SYNJ2 intronic transcript 1	ncRNA
146759	chr20	50848221	50848480	+	0	NA	intron (NM_198799, intron 4 of 4)	L2b|LINE|L2	53289	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
150046	chr21	37375851	37376550	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	8643	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
228442	chr9	99832371	99832750	+	0	NA	intron (NM_173200, intron 4 of 8)	intron (NM_173200, intron 4 of 8)	10675	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
195927	chr6	41788951	41789050	+	0	NA	TTS (NM_001384542)	TTS (NM_001384542)	1306	NM_001382294	100188893		NM_001134493	ENSG00000214736	TOMM6	OBTP|TOM6	translocase of outer mitochondrial membrane 6	protein-coding
109225	chr19	490371	490550	+	0	NA	intron (NM_001385599, intron 1 of 4)	Charlie5|DNA|hAT-Charlie	1164	NM_001385599	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
51164	chr12	50190171	50190330	+	0	NA	intron (NM_001113547, intron 6 of 7)	AluSg|SINE|Alu	11283	NM_001243775	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
108935	chr18	79477771	79478330	+	0	NA	intron (NM_001278670, intron 8 of 8)	intron (NM_001278670, intron 8 of 8)	77751	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
734	chr1	1468521	1469100	+	0	NA	3' UTR (NM_001039211, exon 12 of 12)	3' UTR (NM_001039211, exon 12 of 12)	-2955	NM_031921	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
162680	chr3	48929801	48930400	+	0	NA	intron (NM_001349214, intron 3 of 15)	intron (NM_001349214, intron 3 of 15)	-10715	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
90602	chr17	1624621	1625080	+	0	NA	intron (NM_152346, intron 2 of 13).2	AluJo|SINE|Alu	3566	NM_001321365	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
147149	chr20	56399751	56400450	+	0	NA	intron (NM_001033521, intron 5 of 5)	intron (NM_001033521, intron 5 of 5)	7455	NM_001324	1477		NM_001324	ENSG00000101138	CSTF1	CstF-50|CstFp50	cleavage stimulation factor subunit 1	protein-coding
77494	chr15	84629801	84630100	+	0	NA	Intergenic	AluSz|SINE|Alu	-1510	NR_004859	54581		NM_022050		SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
76558	chr15	75213671	75214400	+	0	NA	Intergenic	Intergenic	12153	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
120752	chr19	45405011	45406000	+	0	NA	promoter-TSS (NM_006663)	promoter-TSS (NM_006663)	-436	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
189933	chr5	177388821	177390100	+	0	NA	intron (NM_003052, intron 8 of 12)	intron (NM_003052, intron 8 of 12)	5026	NM_003052	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
117653	chr19	23914421	23915500	+	0	NA	promoter-TSS (NM_001348689)	promoter-TSS (NM_001348689)	74	NM_001348687	730087		NM_001190829	ENSG00000213967	ZNF726	ZNF92P3	zinc finger protein 726	protein-coding
188223	chr5	150761071	150761230	+	0	NA	Intergenic	L1ME3G|LINE|L1	-2055	NM_001135643	51164		NM_016221	ENSG00000132912	DCTN4	DYN4|P62	dynactin subunit 4	protein-coding
226691	chr9	75102471	75102630	+	0	NA	intron (NM_012383, intron 1 of 9)	MER112|DNA|hAT-Charlie	14036	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
124164	chr19	56111501	56112100	+	0	NA	intron (NM_001351682, intron 1 of 1)	intron (NM_001351682, intron 1 of 1)	9495	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
188347	chr5	151577521	151577780	+	0	NA	intron (NM_001447, intron 1 of 23)	L2a|LINE|L2	13681	NM_001447	2196		NM_001447	ENSG00000086570	FAT2	CDHF8|CDHR9|HFAT2|MEGF1|SCA45	FAT atypical cadherin 2	protein-coding
219546	chr8	77088701	77088950	+	0	NA	Intergenic	L1PA2|LINE|L1	-87781	NM_001172086	5828		NM_000318	ENSG00000164751	PEX2	PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3	peroxisomal biogenesis factor 2	protein-coding
172310	chr4	1604501	1606500	+	0	NA	Intergenic	Intergenic	78491	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
210678	chr7	100546451	100548850	+	0	NA	intron (NM_006076, intron 1 of 11)	intron (NM_006076, intron 1 of 11)	8447	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
177955	chr4	139015071	139016580	+	0	NA	promoter-TSS (NM_012118)	promoter-TSS (NM_012118)	44	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
89009	chr16	87986471	87986800	+	0	NA	intron (NM_001173541, intron 4 of 11)	intron (NM_001173541, intron 4 of 11)	9482	NM_001384940	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
49877	chr12	38799751	38800080	+	0	NA	intron (NM_153634, intron 6 of 19)	L1HS|LINE|L1	105676	NM_153634	144402		NM_153634	ENSG00000139117	CPNE8	-	copine 8	protein-coding
79576	chr16	996421	997150	+	0	NA	Intergenic	Intergenic	15015	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
98615	chr17	47762651	47763700	+	0	NA	Intergenic	AluSx4|SINE|Alu	29939	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
160104	chr3	19148271	19148730	+	0	NA	promoter-TSS (NM_144633)	promoter-TSS (NM_144633)	-10	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
117903	chr19	32748501	32748780	+	0	NA	intron (NM_001366102, intron 5 of 32)	intron (NM_001366102, intron 5 of 32)	28873	NM_001366102	91646		NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
23928	chr1	235089471	235089880	+	0	NA	Intergenic	Intergenic	-19857	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
216994	chr8	23109601	23110100	+	0	NA	intron (NM_003841, intron 1 of 4)	AluJb|SINE|Alu	6929	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
233860	chrX	1524851	1525600	+	0	NA	intron (NM_178129, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	11960	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
181922	chr5	54845051	54845480	+	0	NA	Intergenic	Intergenic	-101007	NR_104658	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
98774	chr17	48127251	48127930	+	0	NA	Intergenic	Intergenic	19824	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
140225	chr2	231724751	231725050	+	0	NA	Intergenic	AluJo|SINE|Alu	11586	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
142047	chr20	1734251	1734800	+	0	NA	Intergenic	Intergenic	-12233	NR_164369	105369219		NR_164369		SIRPB3P	-	signal regulatory protein beta 3, pseudogene	pseudo
69587	chr14	97219301	97219830	+	0	NA	Intergenic	CpG	64708	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
20606	chr1	198922851	198923300	+	0	NA	intron (NR_040073, intron 1 of 2)	intron (NR_040073, intron 1 of 2)	14354	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
222216	chr8	133066811	133067450	+	0	NA	intron (NM_001045557, intron 1 of 7)	intron (NM_001045557, intron 1 of 7)	-6776	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
40789	chr11	64890101	64892130	+	0	NA	TTS (NR_029829)	TTS (NR_029829)	131	NR_029578	406967		NR_029578	ENSG00000283926	MIR192	MIRN192|miR-192|miRNA192	microRNA 192	ncRNA
30717	chr10	81800951	81801050	+	0	NA	Intergenic	AluYk2|SINE|Alu	-74194	NM_001370082	10718		NM_001010848	ENSG00000185737	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding
177605	chr4	121050221	121050480	+	0	NA	intron (NM_024574, intron 1 of 3)	intron (NM_024574, intron 1 of 3)	22185	NM_024574	79625		NM_024574	ENSG00000173376	NDNF	C4orf31|HH25|NORD	neuron derived neurotrophic factor	protein-coding
192617	chr6	26065871	26066530	+	0	NA	Intergenic	Intergenic	-9730	NM_005319	3006		NM_005319	ENSG00000187837	H1-2	H1.2|H1C|H1F2|H1s-1|HIST1H1C	H1.2 linker histone, cluster member	protein-coding
131157	chr2	91524001	91524200	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	135849	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
201159	chr6	142934321	142934980	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	10526	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
214053	chr7	143379671	143380500	+	0	NA	non-coding (NR_161353, exon 2 of 2)	non-coding (NR_161353, exon 2 of 2)	940	NR_161353	100507507		NR_161353		FAM131B-AS2	-	FAM131B antisense RNA 2	ncRNA
218913	chr8	60780621	60781330	+	0	NA	intron (NM_001316690, intron 1 of 4)	intron (NM_001316690, intron 1 of 4)	39716	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
75885	chr15	69751451	69752050	+	0	NA	Intergenic	Intergenic	-83484	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
132682	chr2	108790571	108790730	+	0	NA	intron (NM_001303106, intron 3 of 14)	AluSx1|SINE|Alu	3879	NR_147236	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
61643	chr13	73870871	73871430	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	262779	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
188841	chr5	159175621	159176280	+	0	NA	intron (NM_001199383, intron 5 of 10)	intron (NM_001199383, intron 5 of 10)	31698	NM_001199382	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
215455	chr7	157926021	157926370	+	0	NA	intron (NM_130842, intron 10 of 21)	intron (NM_130842, intron 10 of 21)	71610	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
150373	chr21	42233121	42234100	+	0	NA	intron (NM_207628, intron 4 of 16)	intron (NM_207628, intron 4 of 16)	13712	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
855	chr1	1613701	1614700	+	0	NA	Intergenic	MER65D|LTR|ERV1	-1215	NM_001170688	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
149256	chr21	25881801	25882040	+	0	NA	intron (NM_001385253, intron 16 of 16)	intron (NM_001385253, intron 16 of 16)	-146266	NM_001320267	522		NM_001685	ENSG00000154723	ATP5PF	ATP5|ATP5A|ATP5J|ATPM|CF6|F6	ATP synthase peripheral stalk subunit F6	protein-coding
218282	chr8	42300051	42300620	+	0	NA	intron (NR_033818, intron 5 of 21)	intron (NR_033818, intron 5 of 21)	29033	NM_001242778	3551		NM_001556	ENSG00000104365	IKBKB	IKK-2|IKK-beta|IKK2|IKKB|IMD15|IMD15A|IMD15B|NFKBIKB	inhibitor of nuclear factor kappa B kinase subunit beta	protein-coding
152075	chr22	19732021	19732280	+	0	NA	Intergenic	AluSz|SINE|Alu	8611	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
34360	chr10	132227051	132227150	+	0	NA	intron (NM_173575, intron 3 of 11)	intron (NM_173575, intron 3 of 11)	22008	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
98432	chr17	46819721	46820500	+	0	NA	Intergenic	Intergenic	-1418	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
224333	chr9	6762201	6762430	+	0	NA	intron (NR_148677, intron 1 of 21)	L1PA6|LINE|L1	4342	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
113637	chr19	10331451	10331950	+	0	NA	intron (NM_133452, intron 1 of 12)	AluSc|SINE|Alu	1829	NM_133452	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
98254	chr17	46177651	46178280	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluY|SINE|Alu	14817	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
198152	chr6	90588571	90588730	+	0	NA	Intergenic	Intergenic	-1578	NM_145332	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
211983	chr7	113114051	113114150	+	0	NA	Intergenic	L1MDa|LINE|L1	4454	NM_001352688	401397		NM_001352687	ENSG00000214194	SMIM30	LINC00998|MAVI1	small integral membrane protein 30	protein-coding
27872	chr10	41859551	41860300	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	508120	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
183409	chr5	78096021	78096100	+	0	NA	intron (NM_003664, intron 21 of 26)	SVA_D|Retroposon|SVA	137813	NR_105013	101929154		NR_105012	ENSG00000287162	LOC101929154	-	uncharacterized LOC101929154	ncRNA
32089	chr10	101136771	101137730	+	0	NA	3' UTR (NM_001195517, exon 3 of 3)	3' UTR (NM_001195517, exon 3 of 3)	4016	NR_130724	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
42017	chr11	67416501	67417780	+	0	NA	intron (NM_001166222, intron 2 of 9)	intron (NM_001166222, intron 2 of 9)	1462	NM_001166222	57571		NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
34395	chr10	132371771	132372450	+	0	NA	intron (NM_030626, intron 10 of 10)	intron (NM_030626, intron 10 of 10)	-25090	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
88485	chr16	85104771	85105680	+	0	NA	intron (NM_001366920, intron 5 of 7)	(AC)n|Simple_repeat|Simple_repeat	7247	NM_198491	339145		NM_198491	ENSG00000153789	CIBAR2	FAM92B	CBY1 interacting BAR domain containing 2	protein-coding
211212	chr7	102626851	102626950	+	0	NA	Intergenic	AluSz|SINE|Alu	-10142	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
191035	chr6	3161551	3161800	+	0	NA	Intergenic	AluSx|SINE|Alu	-4131	NM_001069	7280		NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
167769	chr3	132731171	132731550	+	0	NA	intron (NR_002811, intron 2 of 10)	intron (NR_002811, intron 2 of 10)	-8901	NR_037804	100532724		NR_037804	ENSG00000274810	NPHP3-ACAD11	NPHP3	NPHP3-ACAD11 readthrough (NMD candidate)	ncRNA
135223	chr2	159227351	159228000	+	0	NA	intron (NM_001350064, intron 24 of 26)	intron (NM_001350064, intron 24 of 26)	40840	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
87913	chr16	79136851	79136950	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	463837	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
42834	chr11	73032771	73032930	+	0	NA	intron (NM_014824, intron 3 of 19)	L2a|LINE|L2	109468	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
43354	chr11	76686371	76687200	+	0	NA	intron (NR_024042, intron 19 of 20)	MIR3|SINE|MIR	-16038	NM_001128922	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
94590	chr17	29721721	29721980	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	39582	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
100256	chr17	59427601	59427800	+	0	NA	Intergenic	Intergenic	61617	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
3266	chr1	15112221	15112530	+	0	NA	non-coding (NR_027136, exon 5 of 5)	non-coding (NR_027136, exon 5 of 5)	40089	NR_027136	200197		NM_182534	ENSG00000175147	TMEM51-AS1	C1orf126	TMEM51 antisense RNA 1	ncRNA
112554	chr19	6550751	6551130	+	0	NA	Intergenic	MER52C|LTR|ERV1	19914	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
122501	chr19	49581701	49582100	+	0	NA	intron (NM_000951, intron 1 of 6)	MIR|SINE|MIR	584	NM_001316335	5639		NM_000951	ENSG00000126460	PRRG2	PRGP2	proline rich and Gla domain 2	protein-coding
108502	chr18	74083351	74083680	+	0	NA	intron (NM_001142958, intron 8 of 9)	intron (NM_001142958, intron 8 of 9)	64319	NM_152676	201456		NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
164716	chr3	68072021	68072280	+	0	NA	intron (NM_213609, intron 2 of 4)	intron (NM_213609, intron 2 of 4)	67903	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
221781	chr8	127936401	127937200	+	0	NA	intron (NR_003367, intron 2 of 8)	intron (NR_003367, intron 2 of 8)	11923	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
28436	chr10	48470271	48470430	+	0	NA	intron (NR_144644, intron 3 of 8)	intron (NR_144644, intron 3 of 8)	23300	NM_001256026	58504		NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
16104	chr1	153629001	153629530	+	0	NA	intron (NM_006271, intron 1 of 2)	intron (NM_006271, intron 1 of 2)	831	NM_006271	6271		NM_006271	ENSG00000160678	S100A1	S100|S100-alpha|S100A	S100 calcium binding protein A1	protein-coding
135347	chr2	160397701	160398100	+	0	NA	intron (NM_016836, intron 1 of 13)	L2-3_Crp|LINE|L2	9982	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
115271	chr19	14551201	14552600	+	0	NA	intron (NM_001321170, intron 2 of 13)	(TTCT)n|Simple_repeat|Simple_repeat	20166	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
177367	chr4	110516021	110516680	+	0	NA	intron (NR_166844, intron 7 of 19)	intron (NR_166844, intron 7 of 19)	40195	NM_001379613	2028		NM_001977	ENSG00000138792	ENPEP	APA|CD249|gp160	glutamyl aminopeptidase	protein-coding
197589	chr6	80094101	80094380	+	0	NA	Intergenic	Intergenic	-12370	NM_000056	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
205349	chr7	12715521	12716050	+	0	NA	Intergenic	Intergenic	28152	NM_005738	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
92880	chr17	16429621	16430130	+	0	NA	intron (NM_016113, intron 10 of 14)	AluSq2|SINE|Alu	-9112	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
94565	chr17	29620621	29620880	+	0	NA	intron (NM_032854, intron 1 of 9)	intron (NM_032854, intron 1 of 9)	673	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
170816	chr3	189357071	189357230	+	0	NA	Intergenic	MIRc|SINE|MIR	-116556	NR_046722	100874027		NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
85796	chr16	56956721	56956980	+	0	NA	Intergenic	Intergenic	-5100	NM_001286085	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
158143	chr22	50181921	50182580	+	0	NA	Intergenic	Intergenic	-3663	NR_135275	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
17555	chr1	156804401	156805150	+	0	NA	Intergenic	Intergenic	-10975	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
82658	chr16	19520051	19520350	+	0	NA	intron (NM_016641, intron 1 of 5)	intron (NM_016641, intron 1 of 5)	1898	NM_016641	51573		NM_016641	ENSG00000006007	GDE1	363E6.2|MIR16	glycerophosphodiester phosphodiesterase 1	protein-coding
170531	chr3	186614571	186615730	+	0	NA	intron (NM_001354572, intron 1 of 6)	A-rich|Low_complexity|Low_complexity	2090	NM_001622	197		NM_001622	ENSG00000145192	AHSG	A2HS|AHS|APMR1|FETUA|HSGA	alpha 2-HS glycoprotein	protein-coding
97876	chr17	45050601	45054530	+	0	NA	promoter-TSS (NM_001288655)	promoter-TSS (NM_001288655)	-933	NM_001288655	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
6047	chr1	27128521	27128780	+	0	NA	intron (NM_003047, intron 1 of 11)	AluJb|SINE|Alu	26475	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
63730	chr14	21215051	21215400	+	0	NA	intron (NM_001077443, intron 4 of 7)	intron (NM_001077443, intron 4 of 7)	-8325	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
228711	chr9	109097171	109097630	+	0	NA	intron (NM_032012, intron 3 of 17)	L2c|LINE|L2	22547	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
197660	chr6	85451801	85452000	+	0	NA	intron (NM_002526, intron 1 of 8)	intron (NM_002526, intron 1 of 8)	1817	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
166414	chr3	113717951	113718250	+	0	NA	3' UTR (NM_025146, exon 5 of 5)	3' UTR (NM_025146, exon 5 of 5)	-21458	NM_001009899	205717		NM_001009899	ENSG00000176542	USF3	KIAA2018	upstream transcription factor family member 3	protein-coding
202712	chr6	158847001	158847630	+	0	NA	intron (NR_028496, intron 2 of 2)	intron (NR_028496, intron 2 of 2)	10317	NR_028496	202459		NM_145303	ENSG00000293101	OSTCP1	DC2L|OSTCL	oligosaccharyltransferase complex subunit pseudogene 1	pseudo
41740	chr11	66675101	66675300	+	0	NA	intron (NM_031492, intron 2 of 3)	intron (NM_031492, intron 2 of 3)	2687	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
205043	chr7	6553471	6553830	+	0	NA	Intergenic	Intergenic	-2214	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
73990	chr15	52022871	52023780	+	0	NA	intron (NM_002748, intron 1 of 5)	intron (NM_002748, intron 1 of 5)	4106	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
121115	chr19	45974001	45974430	+	0	NA	promoter-TSS (NM_002516)	promoter-TSS (NM_002516)	-350	NM_002516	4858		NM_002516	ENSG00000104967	NOVA2	ANOVA|NEDASB|NOVA-2|NOVA3	NOVA alternative splicing regulator 2	protein-coding
68528	chr14	89040321	89041080	+	0	NA	Intergenic	Intergenic	216049	NM_001366535	123016		NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
204445	chr7	3582171	3582330	+	0	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	280998	NM_152744	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
160	chr1	588771	588930	+	0	NA	Intergenic	(CACACA)n|Simple_repeat|Simple_repeat	40159	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
118312	chr19	35495251	35495780	+	0	NA	Intergenic	Intergenic	-5051	NM_207392	388533		NM_207392	ENSG00000188508	KRTDAP	KDAP|UNQ467	keratinocyte differentiation associated protein	protein-coding
158392	chr22	50511271	50511980	+	0	NA	intron (NM_014551, intron 1 of 8)	AluSg|SINE|Alu	3401	NM_001185011	29781		NM_014551	ENSG00000025770	NCAPH2	CAPH2	non-SMC condensin II complex subunit H2	protein-coding
124932	chr2	8571451	8571750	+	0	NA	intron (NR_110257, intron 4 of 5)	intron (NR_110257, intron 4 of 5)	12192	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
111382	chr19	3721201	3721860	+	0	NA	promoter-TSS (NM_001267561)	promoter-TSS (NM_001267561)	-207	NM_001267561	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
39536	chr11	61104471	61104630	+	0	NA	intron (NM_014207, intron 1 of 10)	intron (NM_014207, intron 1 of 10)	2061	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
73965	chr15	51837621	51838600	+	0	NA	intron (NM_014547, intron 1 of 9)	intron (NM_014547, intron 1 of 9)	8457	NM_014547	29766		NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
128185	chr2	53840471	53840700	+	0	NA	intron (NM_001164165, intron 1 of 9)	GA-rich|Low_complexity|Low_complexity	8620	NR_037453	100500850		NR_037453	ENSG00000265452	MIR3682	mir-3682	microRNA 3682	ncRNA
167835	chr3	133818671	133819230	+	0	NA	intron (NR_163491, intron 6 of 7)	intron (NR_163491, intron 6 of 7)	13135	NM_001379313	58477		NM_021203	ENSG00000144867	SRPRB	APMCF1|SR-beta	SRP receptor subunit beta	protein-coding
5369	chr1	25388951	25389250	+	0	NA	exon (NM_001330430, exon 6 of 9)	exon (NM_001330430, exon 6 of 9)	31814	NM_138618	6006		NM_020485	ENSG00000188672	RHCE	CD240CE|RH|RH30A|RHC|RHCe(152N)|RHE|RHIXB|RHNA|RHPI|Rh4|RhIVb(J)|RhVI|RhVIII|SLC42A4	Rh blood group CcEe antigens	protein-coding
219579	chr8	79765221	79766150	+	0	NA	exon (NM_001040708, exon 5 of 5)	exon (NM_001040708, exon 5 of 5)	790	NM_001282851	23462		NM_012258	ENSG00000164683	HEY1	BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1	hes related family bHLH transcription factor with YRPW motif 1	protein-coding
48943	chr12	12726821	12727080	+	0	NA	intron (NM_001130415, intron 1 of 1)	L3|LINE|CR1	1033	NM_001130415	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
130470	chr2	85547101	85547300	+	0	NA	3' UTR (NM_001142269, exon 14 of 14)	3' UTR (NM_001142269, exon 14 of 14)	8032	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
54504	chr12	92095721	92096180	+	0	NA	intron (NR_132341, intron 1 of 4)	AluY|SINE|Alu	45763	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
18010	chr1	160558651	160559830	+	0	NA	intron (NM_001184882, intron 1 of 5)	L1PA11|LINE|L1	20256	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
143925	chr20	32681171	32681900	+	0	NA	Intergenic	Intergenic	-7594	NM_182584	284805		NM_182584	ENSG00000198547	C20orf203	-	chromosome 20 open reading frame 203	protein-coding
59561	chr13	27370051	27370430	+	0	NA	Intergenic	Intergenic	-54379	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
161285	chr3	39318921	39319180	+	0	NA	Intergenic	L1MD1|LINE|L1	-10659	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
224039	chr9	3492401	3492750	+	0	NA	intron (NM_134428, intron 1 of 17)	MER115|DNA|hAT-Tip100	-3141	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
95274	chr17	35503751	35504050	+	0	NA	intron (NM_001363830, intron 2 of 4)	Harlequin-int|LTR|ERV1	-16161	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
67301	chr14	69571951	69573000	+	0	NA	exon (NM_001271507, exon 2 of 2)	exon (NM_001271507, exon 2 of 2)	2396	NM_001271507	56936		NM_020181	ENSG00000267909	CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
147176	chr20	56463171	56464300	+	0	NA	Intergenic	Intergenic	-4850	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
164133	chr3	56726001	56726930	+	0	NA	TTS (NM_001377414)	TTS (NM_001377414)	-43200	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
172163	chr4	1219951	1220650	+	0	NA	intron (NM_001377193, intron 5 of 9)	Alu|SINE|Alu	10180	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
197948	chr6	89940301	89940870	+	0	NA	intron (NM_021813, intron 7 of 8)	intron (NM_021813, intron 7 of 8)	46116	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
19784	chr1	182388471	182388830	+	0	NA	exon (NM_002065, exon 3 of 8)	exon (NM_002065, exon 3 of 8)	2754	NM_001033056	2752		NM_002065	ENSG00000135821	GLUL	DEE116|GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
67972	chr14	74884751	74885630	+	0	NA	intron (NR_045209, intron 2 of 13)	Charlie16a|DNA|hAT-Charlie	3274	NM_001244883	1743		NM_001933	ENSG00000119689	DLST	DLTS|KGD2|PGL7|PPGL7	dihydrolipoamide S-succinyltransferase	protein-coding
134748	chr2	144890521	144891130	+	0	NA	intron (NR_033870, intron 2 of 4)	intron (NR_033870, intron 2 of 4)	222858	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
150079	chr21	37405501	37406400	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	-12955	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
35904	chr11	2415721	2417000	+	0	NA	intron (NM_014555, intron 7 of 23)	intron (NM_014555, intron 7 of 23)	6685	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
214359	chr7	149603321	149603850	+	0	NA	intron (NR_027788, intron 3 of 7)	intron (NR_027788, intron 3 of 7)	21205	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
74144	chr15	55257121	55257380	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	13036	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
120880	chr19	45574301	45574900	+	0	NA	intron (NM_025136, intron 1 of 1)	MIRb|SINE|MIR	10202	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
80827	chr16	3480771	3481450	+	0	NA	intron (NM_001317094, intron 3 of 3)	intron (NM_001317094, intron 3 of 3)	4359	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
210857	chr7	101114121	101114380	+	0	NA	Intergenic	Intergenic	-12854	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
181450	chr5	41863771	41864280	+	0	NA	intron (NR_157114, intron 1 of 15)	intron (NR_157114, intron 1 of 15)	-6005	NR_046635	100874002		NR_046635	ENSG00000248668	OXCT1-AS1	SARRAH	OXCT1 antisense RNA 1	ncRNA
46899	chr11	134074401	134074800	+	0	NA	intron (NM_032801, intron 1 of 8)	intron (NM_032801, intron 1 of 8)	5528	NM_032801	83700		NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
59292	chr13	24260071	24260480	+	0	NA	intron (NM_153023, intron 3 of 11)	intron (NM_153023, intron 3 of 11)	-5836	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
168215	chr3	141265671	141265830	+	0	NA	intron (NM_001282728, intron 3 of 6)	intron (NM_001282728, intron 3 of 6)	33925	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
105324	chr17	82588301	82588500	+	0	NA	intron (NM_004514, intron 8 of 8)	intron (NM_004514, intron 8 of 8)	60044	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
213563	chr7	139229751	139230050	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-1337	NM_173569	254048		NM_173569	ENSG00000157741	UBN2	-	ubinuclein 2	protein-coding
43633	chr11	83292851	83293430	+	0	NA	Intergenic	Intergenic	-6733	NM_001286119	60492		NM_021825	ENSG00000137500	CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
125692	chr2	20341871	20342330	+	0	NA	intron (NM_001352925, intron 1 of 19)	AluSx1|SINE|Alu	8744	NM_001352927	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
175570	chr4	75643721	75643980	+	0	NA	3' UTR (NM_203504, exon 11 of 11)	3' UTR (NM_203504, exon 11 of 11)	-13322	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
60338	chr13	40764601	40765200	+	0	NA	intron (NM_005830, intron 2 of 6)	MLT1G3|LTR|ERVL-MaLR	6290	NM_005830	10240		NM_005830	ENSG00000102738	MRPS31	IMOGN38|MRP-S31|S31mt|mS31	mitochondrial ribosomal protein S31	protein-coding
93011	chr17	17210101	17210300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3867	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
184191	chr5	95837101	95837300	+	0	NA	intron (NR_157807, intron 1 of 2)	AluSz|SINE|Alu	2373	NR_157807	102724720		NR_157807		LOC102724720	-	uncharacterized LOC102724720	ncRNA
592	chr1	1289901	1290880	+	0	NA	intron (NM_001130413, intron 13 of 17)	CpG-77	5780	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
142068	chr20	2207021	2207780	+	0	NA	non-coding (NR_161305, exon 1 of 2)	non-coding (NR_161305, exon 1 of 2)	472	NR_161305	388780		NR_161305		LINC03086	-	long intergenic non-protein coding RNA 3086	ncRNA
42140	chr11	67646371	67647200	+	0	NA	intron (NM_080658, intron 3 of 7)	intron (NM_080658, intron 3 of 7)	3945	NM_080658	91703		NM_080658	ENSG00000132744	ACY3	ACY-3|HCBP1	aminoacylase 3	protein-coding
117115	chr19	19205471	19205630	+	0	NA	Intergenic	Intergenic	-2136	NM_001300945	126382		NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
157195	chr22	43110501	43111950	+	0	NA	intron (NM_001197, intron 1 of 4)	CpG	475	NM_001197	638		NM_001197	ENSG00000100290	BIK	BIP1|BP4|NBK	BCL2 interacting killer	protein-coding
2519	chr1	9707701	9708230	+	0	NA	intron (NM_001350234, intron 2 of 23)	AluY|SINE|Alu	16498	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
7156	chr1	32235471	32235630	+	0	NA	intron (NR_026850, intron 3 of 6)	AluSx4|SINE|Alu	6160	NR_026850	339483		NM_178546	ENSG00000291132	MTMR9LP	MTMR9L	myotubularin related protein 9 like, pseudogene	pseudo
22673	chr1	223823801	223824000	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	22047	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
83139	chr16	23148371	23150400	+	0	NA	promoter-TSS (NM_020718)	promoter-TSS (NM_020718)	-115	NM_020718	57478		NM_020718	ENSG00000103404	USP31	-	ubiquitin specific peptidase 31	protein-coding
110230	chr19	1765301	1766130	+	0	NA	intron (NM_001080488, intron 1 of 1)	MIRc|SINE|MIR	12209	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
188368	chr5	151779651	151780030	+	0	NA	intron (NM_198395, intron 1 of 11)	L1ME3Cz|LINE|L1	-7664	NR_132345	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
127382	chr2	39780251	39780350	+	0	NA	Intergenic	AluJb|SINE|Alu	-1024	NM_001321477	80745		NM_025264	ENSG00000138050	THUMPD2	C2orf8	THUMP domain containing 2	protein-coding
199771	chr6	125953101	125954100	+	0	NA	Intergenic	LTR2752|LTR|ERV1	-3170	NM_138571	135114		NM_138571	ENSG00000111911	HINT3	HINT4	histidine triad nucleotide binding protein 3	protein-coding
214585	chr7	150632181	150632980	+	0	NA	promoter-TSS (NM_001244072)	promoter-TSS (NM_001244072)	68	NM_001244072	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
32955	chr10	110425951	110426450	+	0	NA	Intergenic	Intergenic	-71707	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
49367	chr12	22380171	22380330	+	0	NA	Intergenic	Intergenic	-45536	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
163494	chr3	51270501	51270700	+	0	NA	intron (NM_004947, intron 23 of 52)	intron (NM_004947, intron 23 of 52)	-114691	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
39732	chr11	61790701	61790900	+	0	NA	intron (NM_014206, intron 1 of 3)	Charlie4z|DNA|hAT-Charlie	1761	NR_030342	693196		NR_030342	ENSG00000284108	MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
212306	chr7	125181371	125181530	+	0	NA	Intergenic	L1HS|LINE|L1	-3119	NR_110188	101928283		NR_110188	ENSG00000224897	LOC101928283	-	uncharacterized LOC101928283	ncRNA
65343	chr14	50311671	50313430	+	0	NA	promoter-TSS (NM_024884)	promoter-TSS (NM_024884)	226	NM_015684	27109		NM_015684	ENSG00000125375	DMAC2L	ATP5S|ATPW|FB|HSU79253	distal membrane arm assembly component 2 like	protein-coding
17448	chr1	156687901	156688350	+	0	NA	Intergenic	AluSq|SINE|Alu	-10718	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
49678	chr12	30671471	30671650	+	0	NA	intron (NM_006390, intron 8 of 24)	AluYm1|SINE|Alu	5684	NM_001190995	10526		NM_006390	ENSG00000133704	IPO8	RANBP8|VISS	importin 8	protein-coding
32437	chr10	102540101	102540430	+	0	NA	intron (NM_001178133, intron 2 of 10)	L1MC4|LINE|L1	36293	NM_001178133	51684		NM_016169	ENSG00000107882	SUFU	BCNS2|JBTS32|PRO1280|SUFUH|SUFUXL	SUFU negative regulator of hedgehog signaling	protein-coding
133159	chr2	112724771	112725380	+	0	NA	intron (NM_001350494, intron 11 of 16)	intron (NM_001350494, intron 11 of 16)	3589	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
203157	chr6	167042471	167043080	+	0	NA	TTS (NM_001278690)	TTS (NM_001278690)	43378	NM_194429	11116		NM_007045	ENSG00000213066	CEP43	FGFR1OP|FOP	centrosomal protein 43	protein-coding
62260	chr13	98565371	98565730	+	0	NA	intron (NM_001286649, intron 1 of 9)	AluSq2|SINE|Alu	11557	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
63974	chr14	22200921	22201350	+	0	NA	Intergenic	Intergenic	231618	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
101860	chr17	74208351	74208880	+	0	NA	intron (NM_000999, intron 3 of 4)	intron (NM_000999, intron 3 of 4)	4706	NR_026914	85001		NM_032915	ENSG00000246731	MGC16275	-	uncharacterized protein MGC16275	ncRNA
145333	chr20	41121101	41121700	+	0	NA	intron (NM_003286, intron 18 of 20)	intron (NM_003286, intron 18 of 20)	-16143	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
174728	chr4	42678621	42678880	+	0	NA	Intergenic	MER57-int|LTR|ERV1	-21645	NM_001105529	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
46656	chr11	128704421	128705000	+	0	NA	intron (NM_001271010, intron 1 of 9)	MER121|DNA|hAT?	-8687	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
236842	chrX	79260271	79260850	+	0	NA	Intergenic	Intergenic	106774	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
107364	chr18	45962221	45963480	+	0	NA	intron (NM_020964, intron 1 of 43)	intron (NM_020964, intron 1 of 43)	4479	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
156637	chr22	41618651	41619400	+	0	NA	intron (NM_015704, intron 1 of 5)	AluY|SINE|Alu	2018	NM_015704	27351		NM_015704	ENSG00000100418	DESI1	D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|POST|PPPDE2	desumoylating isopeptidase 1	protein-coding
110384	chr19	1923301	1923830	+	0	NA	intron (NM_079834, intron 6 of 6)	intron (NM_079834, intron 6 of 6)	-17607	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
16092	chr1	153547421	153547680	+	0	NA	3' UTR (NM_002960, exon 3 of 3)	3' UTR (NM_002960, exon 3 of 3)	1708	NM_002960	6274		NM_002960	ENSG00000188015	S100A3	S100E	S100 calcium binding protein A3	protein-coding
62295	chr13	98992371	98992730	+	0	NA	intron (NM_001318849, intron 1 of 54)	THE1B|LTR|ERVL-MaLR	-14486	NM_001130050	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
44275	chr11	102291751	102292050	+	0	NA	Intergenic	L2b|LINE|L2	-25584	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
160828	chr3	33057171	33057530	+	0	NA	intron (NM_001135602, intron 3 of 12)	MSTA|LTR|ERVL-MaLR	39482	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
104205	chr17	80478201	80479350	+	0	NA	Intergenic	CpG-11814	-2168	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
129847	chr2	72915051	72915450	+	0	NA	Intergenic	AluJb|SINE|Alu	-2269	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
154893	chr22	37159551	37159850	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	-9784	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
77267	chr15	81400671	81400900	+	0	NA	intron (NR_120365, intron 6 of 6)	MIR3|SINE|MIR	-26572	NM_001080532	342125		NM_181841	ENSG00000188869	TMC3	-	transmembrane channel like 3	protein-coding
183224	chr5	76327221	76327650	+	0	NA	3' UTR (NM_014979, exon 13 of 13)	3' UTR (NM_014979, exon 13 of 13)	-75850	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
114813	chr19	13806751	13807050	+	0	NA	intron (NM_023072, intron 3 of 12)	(GTGG)n|Simple_repeat|Simple_repeat	11457	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
67063	chr14	67836951	67837280	+	0	NA	intron (NM_133509, intron 4 of 10)	intron (NM_133509, intron 4 of 10)	13523	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
67609	chr14	72713951	72714830	+	0	NA	intron (NM_001280544, intron 6 of 9)	intron (NM_001280544, intron 6 of 9)	178259	NM_001280544	8110		NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4|SMARCG3	double PHD fingers 3	protein-coding
219411	chr8	70641751	70642080	+	0	NA	intron (NM_016027, intron 4 of 6)	MIRb|SINE|MIR	27270	NM_016027	51110		NM_016027	ENSG00000147592	LACTB2	CGI-83	lactamase beta 2	protein-coding
230503	chr9	128256351	128256450	+	0	NA	3' UTR (NM_004486, exon 26 of 26)	3' UTR (NM_004486, exon 26 of 26)	-11370	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
74830	chr15	63496151	63496250	+	0	NA	Intergenic	Intergenic	-8311	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
70511	chr14	102302201	102302400	+	0	NA	intron (NR_148552, intron 1 of 9)	AluSx1|SINE|Alu	2864	NM_014226	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
234086	chrX	9205621	9206530	+	0	NA	Intergenic	Intergenic	-171948	NM_205849	171483		NM_173696	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9 member B	protein-coding
145039	chr20	38152421	38152850	+	0	NA	intron (NM_001323317, intron 2 of 11)	intron (NM_001323317, intron 2 of 11)	12635	NM_004613	7052		NM_004613	ENSG00000198959	TGM2	G(h)|TG(C)|TGC|hTG2|tTG	transglutaminase 2	protein-coding
18147	chr1	160753701	160753900	+	0	NA	3' UTR (NM_001282595, exon 6 of 6)	3' UTR (NM_001282595, exon 6 of 6)	14553	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
63627	chr14	20663041	20664150	+	0	NA	Intergenic	Intergenic	-20582	NM_001145	283		NM_001145	ENSG00000214274	ANG	ALS9|HEL168|RAA1|RNASE4|RNASE5	angiogenin	protein-coding
131100	chr2	89835971	89837030	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-198593	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
80446	chr16	2663371	2664250	+	0	NA	intron (NR_040023, intron 2 of 2)	HERVK13-int|LTR|ERVK	9629	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
110017	chr19	1442021	1442450	+	0	NA	Intergenic	Intergenic	3839	NM_001308226	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
24790	chr1	248938771	248938930	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	32607	NM_001017434	267002		NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
150097	chr21	37434901	37435880	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	15091	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
231606	chr9	131561251	131561550	+	0	NA	Intergenic	AluJr|SINE|Alu	15877	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
79252	chr16	403621	403880	+	0	NA	intron (NM_020664, intron 1 of 8)	AluJb|SINE|Alu	1865	NM_020664	26063		NM_020664	ENSG00000242612	DECR2	PDCR|SDR17C1	2,4-dienoyl-CoA reductase 2	protein-coding
78200	chr15	90574321	90575100	+	0	NA	intron (NM_001042574, intron 2 of 14)	L1ME4b|LINE|L1	44787	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
79434	chr16	704951	705050	+	0	NA	intron (NM_153350, intron 1 of 5)	intron (NM_153350, intron 1 of 5)	801	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
23874	chr1	234844271	234844800	+	0	NA	Intergenic	Intergenic	-84479	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
227212	chr9	88435251	88435750	+	0	NA	intron (NM_006717, intron 2 of 5)	L1MC5a|LINE|L1	47056	NM_006717	10927		NM_006717	ENSG00000106723	SPIN1	SPIN|TDRD24	spindlin 1	protein-coding
197355	chr6	73454551	73455580	+	0	NA	Intergenic	Intergenic	-2768	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
192910	chr6	27617801	27618000	+	0	NA	Intergenic	Intergenic	-76135	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
24765	chr1	248842821	248843230	+	0	NA	intron (NM_024836, intron 1 of 3)	intron (NM_024836, intron 1 of 3)	4801	NM_024836	79894		NM_024836	ENSG00000171161	ZNF672	-	zinc finger protein 672	protein-coding
129525	chr2	69691521	69692000	+	0	NA	intron (NM_001320698, intron 2 of 14)	intron (NM_001320698, intron 2 of 14)	47952	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
85261	chr16	48535171	48535330	+	0	NA	Intergenic	Intergenic	74930	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
81269	chr16	4629101	4629300	+	0	NA	intron (NM_001142291, intron 1 of 15)	L1ME1|LINE|L1	4374	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
227983	chr9	95379621	95379900	+	0	NA	Intergenic	Intergenic	-62051	NM_000136	2176		NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	FA complementation group C	protein-coding
231956	chr9	133144011	133145480	+	0	NA	intron (NM_001042368, intron 1 of 17)	CpG	4465	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
142096	chr20	2530051	2530800	+	0	NA	Intergenic	MIRb|SINE|MIR	-5903	NM_001282495	79175		NM_024325	ENSG00000088876	ZNF343	dJ734P14.5	zinc finger protein 343	protein-coding
217781	chr8	33481751	33482050	+	0	NA	Intergenic	AluSx|SINE|Alu	-3282	NM_032509	84549		NM_032509	ENSG00000198042	MAK16	MAK16L|RBM13	MAK16 homolog	protein-coding
13045	chr1	111274751	111275130	+	0	NA	Intergenic	L1MB2|LINE|L1	-5584	NR_003928	149620		NM_001013621	ENSG00000290764	CHIAP2	-	chitinase, acidic pseudogene 2	pseudo
200761	chr6	137822021	137822290	+	0	NA	Intergenic	AluSx|SINE|Alu	-45104	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
45564	chr11	118792701	118794330	+	0	NA	Intergenic	Intergenic	-2351	NM_004397	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
175327	chr4	68344401	68345300	+	0	NA	intron (NM_001031732, intron 1 of 16)	AluJb|SINE|Alu	5240	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
29159	chr10	68722771	68722930	+	0	NA	intron (NM_018237, intron 2 of 24)	AluSg|SINE|Alu	1611	NR_104262	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
135431	chr2	161166621	161167600	+	0	NA	intron (NM_001199135, intron 1 of 7)	intron (NM_001199135, intron 1 of 7)	6682	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
164512	chr3	63217221	63217590	+	0	NA	Intergenic	L1PA2|LINE|L1	-60903	NM_001130003	132204		NM_144642	ENSG00000163630	SYNPR	SPO	synaptoporin	protein-coding
108706	chr18	77068201	77069350	+	0	NA	intron (NM_001025100, intron 2 of 3)	L1M5|LINE|L1	-51720	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
47352	chr12	1995421	1995680	+	0	NA	intron (NR_135060, intron 2 of 10)	intron (NR_135060, intron 2 of 10)	8907	NM_152640	196513		NM_152640	ENSG00000151065	DCP1B	DCP1	decapping mRNA 1B	protein-coding
165729	chr3	105353601	105354000	+	0	NA	Intergenic	CpG	-12913	NM_001243283	214		NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
175243	chr4	57110601	57111130	+	0	NA	promoter-TSS (NM_001253835)	promoter-TSS (NM_001253835)	-480	NM_001253835	3490		NM_001553	ENSG00000163453	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin like growth factor binding protein 7	protein-coding
137263	chr2	193584671	193584830	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-759519	NR_110222	101927406		NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
7365	chr1	32815751	32816500	+	0	NA	intron (NM_003680, intron 1 of 12)	AluY|SINE|Alu	-1317	NM_001256121	64766		NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding
188396	chr5	153352671	153353080	+	0	NA	Intergenic	Intergenic	-137649	NM_001114183	2890		NM_000827	ENSG00000155511	GRIA1	GLUH1|GLUR1|GLURA|GluA1|HBGR1|MRD67|MRT76	glutamate ionotropic receptor AMPA type subunit 1	protein-coding
219597	chr8	80016971	80017750	+	0	NA	intron (NM_014018, intron 1 of 2)	L1MCa|LINE|L1	12899	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
195620	chr6	37704221	37704580	+	0	NA	Intergenic	L2b|LINE|L2	-6517	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
228832	chr9	112097601	112098200	+	0	NA	intron (NM_022486, intron 10 of 16)	intron (NM_022486, intron 10 of 16)	77397	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
196241	chr6	42885201	42885600	+	0	NA	intron (NM_198486, intron 4 of 6)	AluY|SINE|Alu	5421	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
85592	chr16	53511501	53511750	+	0	NA	Intergenic	Intergenic	-8321	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
202831	chr6	159729671	159730130	+	0	NA	intron (NM_001270531, intron 1 of 7)	intron (NM_001270531, intron 1 of 7)	2394	NM_001270533	9589		NM_004906	ENSG00000146457	WTAP	Mum2	WT1 associated protein	protein-coding
53950	chr12	71844821	71845750	+	0	NA	intron (NR_027449, intron 1 of 15)	intron (NR_027449, intron 1 of 15)	5526	NM_022771	64786		NM_022771	ENSG00000121749	TBC1D15	RAB7-GAP	TBC1 domain family member 15	protein-coding
162987	chr3	49715051	49716180	+	0	NA	exon (NM_022064, exon 32 of 39)	exon (NM_022064, exon 32 of 39)	4069	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
44622	chr11	108734871	108735280	+	0	NA	intron (NM_004398, intron 13 of 17)	intron (NM_004398, intron 13 of 17)	70006	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
210214	chr7	99215271	99215430	+	0	NA	Intergenic	AluSg|SINE|Alu	-7235	NM_001145715	402569		NM_001145715	ENSG00000185467	KPNA7	IPOA8|OZEMA17	karyopherin subunit alpha 7	protein-coding
10164	chr1	61075871	61076030	+	0	NA	Intergenic	AluSc|SINE|Alu	-1277	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
202516	chr6	158565701	158565900	+	0	NA	intron (NR_164859, intron 1 of 16)	intron (NR_164859, intron 1 of 16)	5709	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
200490	chr6	135451551	135451950	+	0	NA	intron (NM_017651, intron 10 of 27)	intron (NM_017651, intron 10 of 27)	45990	NM_001134831	54806		NM_017651	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
121754	chr19	47752271	47753650	+	0	NA	intron (NM_015710, intron 6 of 12)	L2b|LINE|L2	-2893	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
111701	chr19	4296471	4296830	+	0	NA	intron (NM_001308232, intron 1 of 3)	intron (NM_001308232, intron 1 of 3)	5781	NM_144615	126259		NM_144615	ENSG00000167664	TMIGD2	CD28H|IGPR-1|IGPR1	transmembrane and immunoglobulin domain containing 2	protein-coding
122628	chr19	49816871	49817700	+	0	NA	Intergenic	Intergenic	-1004	NM_001378355	81857		NM_030973	ENSG00000104973	MED25	ACID1|ARC92|BVSYS|CMT2B2|P78|PTOV2|TCBAP0758	mediator complex subunit 25	protein-coding
169991	chr3	179649451	179650280	+	0	NA	Intergenic	AluSg4|SINE|Alu	-3175	NM_003940	8975		NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13	protein-coding
67470	chr14	70888471	70889300	+	0	NA	Intergenic	Intergenic	-18574	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
62486	chr13	99403251	99404230	+	0	NA	Intergenic	Intergenic	47609	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
175821	chr4	77865571	77865730	+	0	NA	intron (NM_020236, intron 1 of 8)	AluJb|SINE|Alu	2820	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
3594	chr1	16231271	16231630	+	0	NA	TTS (NM_030907)	TTS (NM_030907)	5733	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
102080	chr17	74959151	74959630	+	0	NA	intron (NM_030630, intron 8 of 18)	intron (NM_030630, intron 8 of 18)	-11299	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
212581	chr7	128939021	128939880	+	0	NA	intron (NM_032643, intron 1 of 8)	intron (NM_032643, intron 1 of 8)	-1220	NM_001098627	3663		NM_032643	ENSG00000128604	IRF5	SLEB10	interferon regulatory factor 5	protein-coding
7410	chr1	32949701	32950100	+	0	NA	intron (NM_001127361, intron 1 of 8)	(AC)n|Simple_repeat|Simple_repeat	14909	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
96662	chr17	40665021	40665280	+	0	NA	promoter-TSS (NM_152349)	promoter-TSS (NM_152349)	27	NM_152349	125113		NM_152349	ENSG00000213424	KRT222	KA21|KRT222P	keratin 222	protein-coding
196823	chr6	46323271	46323500	+	0	NA	intron (NR_125838, intron 2 of 3)	MIR|SINE|MIR	2507	NM_005822	10231		NM_005822	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
182195	chr5	56821221	56821480	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	5801	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
28574	chr10	50890971	50891150	+	0	NA	Intergenic	Intergenic	-5385	NM_138933	29974		NM_014576	ENSG00000148584	A1CF	ACF|ACF64|ACF65|APOBEC1CF|ASP	APOBEC1 complementation factor	protein-coding
207716	chr7	47568521	47568800	+	0	NA	intron (NM_022748, intron 1 of 30)	intron (NM_022748, intron 1 of 30)	13451	NM_022748	64759		NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding
16322	chr1	154216401	154217100	+	0	NA	intron (NM_015449, intron 1 of 5)	AluSx3|SINE|Alu	-3422	NM_001127320	9898		NM_014847	ENSG00000143569	UBAP2L	NEDLBF|NICE-4|NICE4	ubiquitin associated protein 2 like	protein-coding
52764	chr12	56673401	56673950	+	0	NA	intron (NM_001282601, intron 1 of 6)	AluSx1|SINE|Alu	14609	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
204769	chr7	5605751	5606300	+	0	NA	3' UTR (NM_003088, exon 5 of 5)	3' UTR (NM_003088, exon 5 of 5)	13209	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
134767	chr2	147297671	147298230	+	0	NA	Intergenic	Intergenic	-546567	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
161102	chr3	38167851	38168230	+	0	NA	intron (NM_005109, intron 1 of 17)	intron (NM_005109, intron 1 of 17)	2503	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
173181	chr4	6750221	6750480	+	0	NA	Intergenic	Intergenic	-32377	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
66080	chr14	59161551	59161850	+	0	NA	Intergenic	Intergenic	-26967	NM_001270520	23002		NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
195174	chr6	35920701	35921450	+	0	NA	promoter-TSS (NM_003137)	promoter-TSS (NM_003137)	23	NM_003137	6732		NM_003137	ENSG00000096063	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
147238	chr20	57411501	57411700	+	0	NA	Intergenic	Intergenic	-18544	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
197967	chr6	89987121	89987380	+	0	NA	intron (NM_021813, intron 6 of 8)	L3|LINE|CR1	92781	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
126175	chr2	26503221	26503930	+	0	NA	intron (NM_194248, intron 6 of 46)	CpG	-25451	NM_194322	9381		NM_004802	ENSG00000115155	OTOF	AUNB1|DFNB6|DFNB9|FER1L2|NSRD9	otoferlin	protein-coding
180924	chr5	34494101	34494500	+	0	NA	Intergenic	L1M7|LINE|L1	-162028	NM_001145522	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
132339	chr2	105576221	105576950	+	0	NA	Intergenic	Intergenic	33974	NR_038891	285000		NR_038891		LINC02946	RMEL1	long intergenic non-protein coding RNA 2946	ncRNA
202337	chr6	157535721	157536500	+	0	NA	intron (NM_024630, intron 1 of 8)	intron (NM_024630, intron 1 of 8)	6978	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
72477	chr15	32536001	32537500	+	0	NA	promoter-TSS (NR_102756).2	promoter-TSS (NR_102756).2	-9	NR_102756	100996255		NR_102756		LINC02256	-	long intergenic non-protein coding RNA 2256	ncRNA
29357	chr10	69573521	69574030	+	0	NA	promoter-TSS (NM_020999)	promoter-TSS (NM_020999)	-353	NM_020999	50674		NM_020999	ENSG00000122859	NEUROG3	Atoh5|Math4B|NGN-3|bHLHa7|ngn3	neurogenin 3	protein-coding
120556	chr19	44961471	44961830	+	0	NA	intron (NM_001294, intron 1 of 13)	L2b|LINE|L2	6270	NM_001294	1209		NM_001294	ENSG00000104853	CLPTM1	-	CLPTM1 regulator of GABA type A receptor forward trafficking	protein-coding
188431	chr5	154385171	154386330	+	0	NA	intron (NM_198321, intron 6 of 11)	intron (NM_198321, intron 6 of 11)	38644	NR_031626	100302181		NR_031626	ENSG00000221430	MIR1294	MIRN1294|hsa-mir-1294|mir-1294	microRNA 1294	ncRNA
61684	chr13	74029851	74030150	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	103929	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
128202	chr2	53966871	53967030	+	0	NA	intron (NM_014614, intron 1 of 46)	AluSg|SINE|Alu	4043	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
79772	chr16	1370101	1370750	+	0	NA	intron (NM_001370526, intron 2 of 5)	CpG	9227	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
102201	chr17	75177721	75178000	+	0	NA	intron (NM_006937, intron 2 of 3)	AluSx1|SINE|Alu	5099	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
218564	chr8	54459351	54459880	+	0	NA	exon (NM_022454, exon 2 of 2)	exon (NM_022454, exon 2 of 2)	1680	NM_022454	64321		NM_022454	ENSG00000164736	SOX17	VUR3	SRY-box transcription factor 17	protein-coding
237180	chrX	107708351	107708650	+	0	NA	Intergenic	L1MB3|LINE|L1	8008	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
26666	chr10	22609601	22610230	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	104193	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
225070	chr9	33266401	33266930	+	0	NA	intron (NM_001195536, intron 2 of 6)	intron (NM_001195536, intron 2 of 6)	1616	NM_016410	51510		NM_016410	ENSG00000086065	CHMP5	C9orf83|CGI-34|HSPC177|PNAS-2|SNF7DC2|Vps60	charged multivesicular body protein 5	protein-coding
219742	chr8	81072571	81072730	+	0	NA	intron (NM_018440, intron 1 of 8)	AluJr|SINE|Alu	39418	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
141888	chr20	818871	819830	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	-14365	NM_001042353	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
137686	chr2	197481871	197482030	+	0	NA	Intergenic	AluSx|SINE|Alu	4953	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
12581	chr1	108878871	108879180	+	0	NA	intron (NM_001321038, intron 1 of 14)	intron (NM_001321038, intron 1 of 14)	2040	NM_001321038	29899		NM_013296	ENSG00000121957	GPSM2	CMCS|DFNB82|LGN|PINS	G protein signaling modulator 2	protein-coding
121653	chr19	47488371	47488650	+	0	NA	intron (NR_038456, intron 10 of 11)	intron (NR_038456, intron 10 of 11)	4228	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
73492	chr15	43750821	43751150	+	0	NA	intron (NM_005313, intron 1 of 12)	AluSg|SINE|Alu	4547	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
14198	chr1	125088951	125089280	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	3570003	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
125918	chr2	24975221	24975800	+	0	NA	intron (NR_034113, intron 1 of 2)	MER119|DNA|hAT-Charlie	3398	NR_034113	729723		NR_034113	ENSG00000224165	DNAJC27-AS1	-	DNAJC27 antisense RNA 1	ncRNA
209486	chr7	76620671	76620830	+	0	NA	intron (NM_152992, intron 3 of 4)	AluSq2|SINE|Alu	6553	NM_012230	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
18349	chr1	161216771	161217150	+	0	NA	intron (NM_004106, intron 1 of 4)	MIRc|SINE|MIR	1665	NM_004106	2207		NM_004106	ENSG00000158869	FCER1G	FCRG	Fc epsilon receptor Ig	protein-coding
1951	chr1	6575251	6575750	+	0	NA	intron (NM_138697, intron 3 of 5)	intron (NM_138697, intron 3 of 5)	-4494	NM_001278648	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
83906	chr16	28992421	28992930	+	0	NA	Intergenic	MIRb|SINE|MIR	7623	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
113930	chr19	10728421	10728680	+	0	NA	intron (NM_001005362, intron 1 of 19)	intron (NM_001005362, intron 1 of 19)	10146	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
135396	chr2	160589001	160589200	+	0	NA	Intergenic	L1MA4|LINE|L1	-95293	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
14891	chr1	146966251	146966630	+	0	NA	intron (NM_001278141, intron 11 of 36)	intron (NM_001278141, intron 11 of 36)	27895	NM_001278141	149013		NM_001278141	ENSG00000268043	NBPF12	COAS1|KIAA1245	NBPF member 12	protein-coding
14405	chr1	144275671	144275830	+	0	NA	TTS (NR_136328)	TTS (NR_136328)	1012	NR_111000	101060524		NR_111000		LOC101060524	-	D(1B) dopamine receptor-like	pseudo
5454	chr1	25618301	25618570	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	1644	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
148818	chr21	8376971	8377800	+	0	NA	intron (NR_003287, intron 2 of 2)	intron (NR_003287, intron 2 of 2)	-3280	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
134510	chr2	143420121	143420580	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	290931	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
121903	chr19	48394701	48394900	+	0	NA	5' UTR (NM_000836, exon 2 of 14)	5' UTR (NM_000836, exon 2 of 14)	1132	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
80628	chr16	2983151	2984580	+	0	NA	Intergenic	Intergenic	-3419	NM_001258451	9088		NM_004203	ENSG00000127564	PKMYT1	MYT1|PPP1R126	protein kinase, membrane associated tyrosine/threonine 1	protein-coding
142404	chr20	3853071	3853800	+	0	NA	intron (NM_001385663, intron 1 of 7)	AluY|SINE|Alu	6601	NM_020746	57506		NM_020746	ENSG00000088888	MAVS	CARDIF|IPS-1|IPS1|VISA	mitochondrial antiviral signaling protein	protein-coding
57232	chr12	121534271	121535680	+	0	NA	intron (NM_001005366, intron 6 of 22)	intron (NM_001005366, intron 6 of 22)	45271	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
163006	chr3	49784071	49784780	+	0	NA	intron (NM_153273, intron 1 of 5)	AluSg|SINE|Alu	1769	NM_001242829	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
210800	chr7	100862671	100863030	+	0	NA	intron (NM_020246, intron 13 of 13)	intron (NM_020246, intron 13 of 13)	-4537	NM_003302	7205		NM_003302	ENSG00000087077	TRIP6	OIP-1|OIP1|TRIP-6|TRIP6i2|ZRP-1	thyroid hormone receptor interactor 6	protein-coding
19743	chr1	181166201	181166920	+	0	NA	Intergenic	Intergenic	-7924	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
88761	chr16	86606071	86606230	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	27601	NM_005250	2300		NM_005250	ENSG00000176678	FOXL1	FKH6|FKHL11|FREAC7|OTSC11	forkhead box L1	protein-coding
216272	chr8	12492871	12493740	+	0	NA	intron (NR_040092, intron 4 of 5)	HERVE-int|LTR|ERV1	56292	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
181407	chr5	40695271	40695580	+	0	NA	Intergenic	AluSg|SINE|Alu	15510	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
14356	chr1	144021871	144022350	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-48591	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
97366	chr17	43311651	43311950	+	0	NA	Intergenic	Intergenic	-11569	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
93640	chr17	19177321	19177730	+	0	NA	Intergenic	AluJr|SINE|Alu	-10491	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
75700	chr15	67946801	67947000	+	0	NA	Intergenic	Intergenic	-106855	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
223611	chr8	144314951	144315590	+	0	NA	TTS (NM_005526)	TTS (NM_005526)	2045	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
1614	chr1	3674951	3675250	+	0	NA	intron (NM_001204185, intron 1 of 12)	intron (NM_001204185, intron 1 of 12)	-15572	NM_001204190	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
69249	chr14	92914101	92914350	+	0	NA	Intergenic	Intergenic	-6743	NR_135253	101929002		NR_135253	ENSG00000258499	LINC02287	-	long intergenic non-protein coding RNA 2287	ncRNA
111639	chr19	4175101	4175800	+	0	NA	intron (NM_001321061, intron 4 of 5)	intron (NM_001321061, intron 4 of 5)	6856	NM_001321064	51548		NM_016539	ENSG00000077463	SIRT6	SIR2L6|hSIRT6	sirtuin 6	protein-coding
74183	chr15	55497921	55498850	+	0	NA	non-coding (NR_037923, exon 1 of 16)	non-coding (NR_037923, exon 1 of 16)	199	NR_037923	100533483		NR_037923	ENSG00000261771	DNAAF4-CCPG1	DYX1C1-CCPG1	DNAAF4-CCPG1 readthrough (NMD candidate)	ncRNA
151926	chr22	19032871	19033880	+	0	NA	Intergenic	Intergenic	10751	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
54713	chr12	93457501	93457700	+	0	NA	Intergenic	Intergenic	-9914	NR_038161	28977		NM_014050	ENSG00000198015	MRPL42	HSPC204|L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT|mL42	mitochondrial ribosomal protein L42	protein-coding
142172	chr20	2851731	2852580	+	0	NA	intron (NM_022575, intron 1 of 23)	LTR41B|LTR|ERVL	-11004	NM_001271168	64773		NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
177348	chr4	110076851	110077150	+	0	NA	intron (NM_024090, intron 2 of 3)	L1PA4|LINE|L1	121615	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
135368	chr2	160433201	160433830	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	-25633	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
129341	chr2	68750451	68750880	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	15288	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
234534	chrX	19666501	19666700	+	0	NA	intron (NM_001353892, intron 7 of 17)	intron (NM_001353892, intron 7 of 17)	4399	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
94079	chr17	27543401	27543600	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	71536	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
17626	chr1	157045101	157046680	+	0	NA	promoter-TSS (NM_198236)	promoter-TSS (NM_198236)	-148	NM_198236	9826		NM_014784	ENSG00000132694	ARHGEF11	GTRAP48|PDZ-RHOGEF	Rho guanine nucleotide exchange factor 11	protein-coding
207133	chr7	42931521	42933180	+	0	NA	promoter-TSS (NM_031903)	promoter-TSS (NM_031903)	-26	NR_156497	64983		NM_031903	ENSG00000106591	MRPL32	HSPC283|L32mt|MRP-L32|bL32m|bMRP-59b	mitochondrial ribosomal protein L32	protein-coding
95046	chr17	32518951	32520000	+	0	NA	intron (NM_015194, intron 21 of 21)	CpG	32482	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
44755	chr11	112073501	112074780	+	0	NA	promoter-TSS (NM_001301019)	promoter-TSS (NM_001301019)	31	NM_001082619	120379		NM_138789	ENSG00000150773	PIH1D2	DNAAF15	PIH1 domain containing 2	protein-coding
71926	chr15	22835771	22835930	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-2791	NM_001184889	81614		NM_030922	ENSG00000140157	NIPA2	SLC57A2	NIPA magnesium transporter 2	protein-coding
57454	chr12	121917851	121918980	+	0	NA	promoter-TSS (NM_001178003)	promoter-TSS (NM_001178003)	-177	NM_144668	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
377	chr1	1036751	1036850	+	0	NA	intron (NM_198576, intron 3 of 35)	intron (NM_198576, intron 3 of 35)	2807	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
213914	chr7	142520101	142520850	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	45948	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
56598	chr12	118056071	118056550	+	0	NA	intron (NM_001278557, intron 1 of 8)	L2b|LINE|L2	4869	NM_018639	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
204835	chr7	5739901	5740500	+	0	NA	intron (NM_207111, intron 4 of 16)	AluY|SINE|Alu	-28290	NR_106934	102466203		NR_106934	ENSG00000283419	MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
180042	chr5	1068751	1069450	+	0	NA	intron (NM_006598, intron 17 of 23).2	intron (NM_006598, intron 17 of 23).2	-6126	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
98930	chr17	48622151	48622680	+	0	NA	3' UTR (NM_024017, exon 2 of 2)	3' UTR (NM_024017, exon 2 of 2)	3943	NM_024017	3219		NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
153144	chr22	23766451	23767000	+	0	NA	TTS (NM_001376905)	TTS (NM_001376905)	1247	NR_125756	400916		NM_213720	ENSG00000250479	CHCHD10	C22orf16|FTDALS2|IMMD|MIX17A|N27C7-4|SMAJ	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding
49169	chr12	14994701	14995100	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-6933	NR_120466	101928340		NR_120466		LINC01489	-	long intergenic non-protein coding RNA 1489	ncRNA
118737	chr19	38305071	38305230	+	0	NA	TTS (NM_001317801)	TTS (NM_001317801)	899	NM_033520	64073		NM_022125	ENSG00000167644	C19orf33	H2RSP|IMUP|IMUP-1|IMUP-2	chromosome 19 open reading frame 33	protein-coding
25554	chr10	7482571	7483080	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-71339	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
37596	chr11	19712051	19713550	+	0	NA	promoter-TSS (NM_001244963)	promoter-TSS (NM_001244963)	-37	NM_001244963	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
161474	chr3	42347021	42347280	+	0	NA	Intergenic	Intergenic	63460	NM_144634	131375		NM_144634	ENSG00000157093	LYZL4	LYC4|LYZA	lysozyme like 4	protein-coding
33794	chr10	123141951	123142250	+	0	NA	Intergenic	Intergenic	-6022	NM_005519	3167		NM_005519	ENSG00000188816	HMX2	H6L|Nkx5-2	H6 family homeobox 2	protein-coding
39474	chr11	60993101	60993750	+	0	NA	intron (NM_006725, intron 1 of 12)	L3b|LINE|CR1	21745	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
195402	chr6	36779171	36780200	+	0	NA	intron (NM_001376889, intron 9 of 21)	intron (NM_001376889, intron 9 of 21)	-13890	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
27362	chr10	30746371	30747000	+	0	NA	Intergenic	AluJb|SINE|Alu	23466	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
132033	chr2	100953451	100953750	+	0	NA	intron (NM_002518, intron 7 of 20)	MIR|SINE|MIR	23561	NR_110213	101927142		NR_110213		NPAS2-AS1	-	NPAS2 antisense RNA 1	ncRNA
180199	chr5	1498171	1498330	+	0	NA	intron (NM_024830, intron 2 of 13)	intron (NM_024830, intron 2 of 13)	12606	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
25042	chr10	3768601	3768800	+	0	NA	Intergenic	Intergenic	16509	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
48984	chr12	13103001	13103200	+	0	NA	non-coding (NR_159953, exon 3 of 3)	non-coding (NR_159953, exon 3 of 3)	567	NM_001367364	83445		NM_031289	ENSG00000111305	GSG1	-	germ cell associated 1	protein-coding
82857	chr16	21522451	21523000	+	0	NA	Intergenic	AluY|SINE|Alu	-2281	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
83337	chr16	25009551	25010280	+	0	NA	intron (NM_018054, intron 1 of 18)	MIRb|SINE|MIR	5454	NM_001006634	55114		NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
167445	chr3	129085471	129086030	+	0	NA	Intergenic	Intergenic	24971	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
90979	chr17	2703371	2703530	+	0	NA	exon (NM_001366662, exon 3 of 26)	exon (NM_001366662, exon 3 of 26)	8314	NM_001366661	23277		NM_015229	ENSG00000132361	CLUH	CLU1	clustered mitochondria homolog	protein-coding
91733	chr17	6658701	6658900	+	0	NA	non-coding (NR_045985, exon 3 of 5)	non-coding (NR_045985, exon 3 of 5)	1081	NR_045985	100652883		NR_045985		ALOX15P1	ALOX15P	arachidonate 15-lipoxygenase pseudogene 1	pseudo
92705	chr17	14189371	14189730	+	0	NA	intron (NM_001303, intron 5 of 6)	HSMAR2|DNA|TcMar-Mariner	47312	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
30209	chr10	74841201	74841400	+	0	NA	intron (NM_001370137, intron 2 of 17)	AluSz6|SINE|Alu	14700	NM_001370137	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
74728	chr15	63191751	63192900	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	2719	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
221302	chr8	123023401	123023600	+	0	NA	intron (NM_001363963, intron 3 of 6)	AluSg|SINE|Alu	2272	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
76445	chr15	74807471	74808350	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4925	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
34870	chr11	355801	357100	+	0	NA	Intergenic	Intergenic	-13049	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
218105	chr8	40993971	40994130	+	0	NA	Intergenic	Intergenic	-96224	NM_024645	79698		NM_024645	ENSG00000165061	ZMAT4	-	zinc finger matrin-type 4	protein-coding
130335	chr2	84992621	84992880	+	0	NA	intron (NM_020122, intron 1 of 6)	AluY|SINE|Alu	21589	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
201615	chr6	149386171	149386650	+	0	NA	intron (NM_001369506, intron 4 of 7)	L1MB7|LINE|L1	-13852	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
208418	chr7	66750701	66751300	+	0	NA	intron (NM_001367749, intron 1 of 4)	L1MEg1|LINE|L1	-4882	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
202804	chr6	159167871	159168030	+	0	NA	intron (NR_121668, intron 2 of 3)	intron (NR_121668, intron 2 of 3)	-1450	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
227548	chr9	91904621	91904880	+	0	NA	intron (NM_001318204, intron 1 of 7)	intron (NM_001318204, intron 1 of 7)	45478	NM_004560	4920		NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
218852	chr8	60173721	60173980	+	0	NA	Intergenic	Intergenic	107550	NM_001321837	767		NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
35770	chr11	2159371	2159530	+	0	NA	TTS (NM_001185098)	TTS (NM_001185098)	1759	NM_001185097	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
149886	chr21	35995671	35996230	+	0	NA	intron (NR_110418, intron 1 of 5)	intron (NR_110418, intron 1 of 5)	8717	NR_110418	101928269		NR_110418		LOC101928269	-	uncharacterized LOC101928269	ncRNA
73384	chr15	42557671	42557850	+	0	NA	intron (NM_001130447, intron 1 of 4)	intron (NM_001130447, intron 1 of 4)	8922	NM_001130447	55142		NM_018097	ENSG00000137814	HAUS2	C15orf25|CEP27|HsT17025	HAUS augmin like complex subunit 2	protein-coding
69021	chr14	91524021	91524280	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-13596	NR_169193	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
188096	chr5	150355621	150355880	+	0	NA	Intergenic	L2a|LINE|L2	-1889	NM_001135243	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
75828	chr15	69452051	69454310	+	0	NA	intron (NM_213725, intron 1 of 2)	CpG	362	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
5324	chr1	25238891	25241100	+	0	NA	Intergenic	CpG	7459	NR_135786	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
58068	chr12	124543071	124544050	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	24052	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
20172	chr1	192963001	192963200	+	0	NA	Intergenic	L1MA9|LINE|L1	-14843	NR_126003	102724954		NR_126003		RGS2-AS1	LINC01032	RSG2 antisense RNA 1	ncRNA
88428	chr16	84750021	84750580	+	0	NA	intron (NR_073578, intron 3 of 10)	AluSz|SINE|Alu	50300	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
208685	chr7	73232501	73232950	+	0	NA	intron (NR_003186, intron 5 of 7)	AluJr|SINE|Alu	12086	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
201488	chr6	148947571	148948240	+	0	NA	intron (NM_005715, intron 3 of 7)	intron (NM_005715, intron 3 of 7)	16779	NR_038408	100128176		NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA
91226	chr17	3930371	3930530	+	0	NA	intron (NM_174953, intron 17 of 22)	intron (NM_174953, intron 17 of 22)	-13985	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
135404	chr2	160803921	160804180	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-310243	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
71129	chr14	104970051	104970350	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	307	NM_001350929	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
75121	chr15	64527621	64527880	+	0	NA	intron (NM_015042, intron 2 of 9)	L2a|LINE|L2	67172	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
142396	chr20	3825521	3825980	+	0	NA	TTS (NM_001204446)	TTS (NM_001204446)	5203	NM_001204447	55317		NM_018347	ENSG00000125843	AP5S1	C20orf29	adaptor related protein complex 5 subunit sigma 1	protein-coding
175027	chr4	52696401	52696800	+	0	NA	Intergenic	L1PA15|LINE|L1	-15794	NR_145130	57291		NR_024031	ENSG00000226950	DANCR	AGU2|ANCR|KIAA0114|SNHG13|lncRNA-ANCR	differentiation antagonizing non-protein coding RNA	ncRNA
49966	chr12	41522051	41522380	+	0	NA	intron (NM_001164595, intron 5 of 9)	intron (NM_001164595, intron 5 of 9)	84476	NM_013377	29951		NM_013377	ENSG00000165966	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
193761	chr6	31346101	31346600	+	0	NA	Intergenic	MER21-int|LTR|ERVL	8966	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
197055	chr6	53511751	53511950	+	0	NA	intron (NM_001498, intron 6 of 15)	intron (NM_001498, intron 6 of 15)	33251	NM_001197115	2729		NM_001498	ENSG00000001084	GCLC	GCL|GCS|GLCL|GLCLC	glutamate-cysteine ligase catalytic subunit	protein-coding
87099	chr16	68527321	68527850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11628	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
36182	chr11	3206401	3207480	+	0	NA	Intergenic	Intergenic	-11392	NR_027138	283303		NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	ncRNA
117866	chr19	32554551	32554850	+	0	NA	Intergenic	L1MC4|LINE|L1	-26490	NM_004708	9141		NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
79404	chr16	672751	672850	+	0	NA	exon (NM_001352281, exon 17 of 19)	exon (NM_001352281, exon 17 of 19)	-2871	NM_001278721	9028		NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	rhomboid like 1	protein-coding
138715	chr2	213136951	213137050	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	13437	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
100886	chr17	64386951	64387200	+	0	NA	intron (NM_000442, intron 2 of 15)	intron (NM_000442, intron 2 of 15)	3785	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
163581	chr3	51958621	51958880	+	0	NA	intron (NM_033010, intron 12 of 12)	intron (NM_033010, intron 12 of 12)	3369	NM_080865	118442		NM_080865	ENSG00000180929	GPR62	GPCR8|KPG_005	G protein-coupled receptor 62	protein-coding
171502	chr3	196623751	196623850	+	0	NA	Intergenic	AluSx|SINE|Alu	8787	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
114819	chr19	13812201	13812600	+	0	NA	intron (NM_023072, intron 5 of 12)	AluSx4|SINE|Alu	16957	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
154899	chr22	37168221	37168900	+	0	NA	intron (NM_001346222, intron 1 of 9)	MIRb|SINE|MIR	6496	NM_001346223	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
78230	chr15	90657551	90658700	+	0	NA	intron (NR_120372, intron 2 of 3)	intron (NR_120372, intron 2 of 3)	-2109	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
74461	chr15	59692671	59692830	+	0	NA	Intergenic	AluSx|SINE|Alu	-3430	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
45855	chr11	119458621	119458880	+	0	NA	intron (NR_034160, intron 2 of 3)	AluYe5|SINE|Alu	-33765	NM_001311162	7070		NM_006288	ENSG00000154096	THY1	CD90|CDw90	Thy-1 cell surface antigen	protein-coding
150397	chr21	42302901	42303130	+	0	NA	Intergenic	Intergenic	12394	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
59642	chr13	28143971	28144130	+	0	NA	intron (NM_175854, intron 1 of 18)	intron (NM_175854, intron 1 of 18)	-4876	NR_029383	100288730		NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
133153	chr2	112692401	112693350	+	0	NA	Intergenic	Intergenic	-28611	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
110317	chr19	1850751	1851180	+	0	NA	Intergenic	L2a|LINE|L2	-2482	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
232505	chr9	136268601	136268930	+	0	NA	intron (NM_001378188, intron 14 of 25)	L1MEc|LINE|L1	-22953	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
21222	chr1	204128751	204130080	+	0	NA	Intergenic	Intergenic	-11993	NR_123739	101929441		NR_123739	ENSG00000230550	ERLNC1	ElncRNA1|TC0101441	estrogen receptor responsive lncRNA 1	ncRNA
145339	chr20	41131901	41132580	+	0	NA	intron (NR_109889, intron 4 of 6)	intron (NR_109889, intron 4 of 6)	-5303	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
234386	chrX	16445201	16445500	+	0	NA	Intergenic	Intergenic	181735	NR_039762	100616428		NR_039762	ENSG00000265144	MIR548AM	-	microRNA 548am	ncRNA
164248	chr3	57165281	57166000	+	0	NA	promoter-TSS (NM_017563)	promoter-TSS (NM_017563)	-287	NM_017563	54756		NM_017563	ENSG00000144730	IL17RD	HH18|IL-17RD|IL17RLM|SEF	interleukin 17 receptor D	protein-coding
90176	chr17	330771	331600	+	0	NA	promoter-TSS (NR_040011)	promoter-TSS (NR_040011)	-334	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
55813	chr12	108803531	108804250	+	0	NA	intron (NM_001161330, intron 10 of 13)	intron (NM_001161330, intron 10 of 13)	23661	NM_001161331	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
70279	chr14	101736071	101736230	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	5713	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
13862	chr1	117676851	117676950	+	0	NA	Intergenic	LTR79|LTR|ERVL	70852	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
14612	chr1	145343301	145343500	+	0	NA	intron (NM_001278267, intron 73 of 137)	intron (NM_001278267, intron 73 of 137)	62284	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
67639	chr14	73061671	73062230	+	0	NA	intron (NM_021239, intron 1 of 18)	7SLRNA|srpRNA|srpRNA	3416	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
131785	chr2	98492501	98492700	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	46590	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
193490	chr6	30551151	30551450	+	0	NA	intron (NM_005275, intron 8 of 11)	intron (NM_005275, intron 8 of 11)	-5409	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
74800	chr15	63439551	63440180	+	0	NA	Intergenic	Intergenic	49635	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
238181	chrX	136876971	136877880	+	0	NA	intron (NR_028476, intron 3 of 7)	intron (NR_028476, intron 3 of 7)	1846	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
161961	chr3	46277621	46278100	+	0	NA	Intergenic	Intergenic	35400	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
71097	chr14	104878321	104878780	+	0	NA	intron (NM_001112726, intron 5 of 18)	intron (NM_001112726, intron 5 of 18)	13236	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
99617	chr17	50555551	50556150	+	0	NA	TTS (NR_038439)	TTS (NR_038439)	-4865	NM_198377	8913		NM_018896	ENSG00000006283	CACNA1G	Ca(V)T.1|Cav3.1|NBR13|SCA42|SCA42ND	calcium voltage-gated channel subunit alpha1 G	protein-coding
61293	chr13	50221471	50221930	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	49682	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
187430	chr5	142034101	142034500	+	0	NA	Intergenic	L1PA10|LINE|L1	-21273	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
39348	chr11	59538671	59538830	+	0	NA	Intergenic	L1MA4A|LINE|L1	23837	NM_001004711	390199		NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
157818	chr22	47127771	47128300	+	0	NA	intron (NM_001284305, intron 12 of 12)	intron (NM_001284305, intron 12 of 12)	-211993	NR_122047	642757		NR_122047	ENSG00000280080	TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
123422	chr19	54098371	54098830	+	0	NA	intron (NM_001282350, intron 2 of 3).8	FRAM|SINE|Alu	4086	NM_001282350	126014		NM_130771	ENSG00000170909	OSCAR	PIGR3|PIgR-3	osteoclast associated Ig-like receptor	protein-coding
227989	chr9	95492971	95493330	+	0	NA	intron (NM_001354919, intron 2 of 4)	intron (NM_001354919, intron 2 of 4)	14049	NM_001083607	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
117898	chr19	32720321	32720580	+	0	NA	intron (NM_001366102, intron 1 of 32)	(CCCACC)n|Simple_repeat|Simple_repeat	683	NM_001366102	91646		NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
68585	chr14	89445471	89446450	+	0	NA	intron (NM_001085471, intron 1 of 6)	AluJr4|SINE|Alu	28606	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
107064	chr18	32770201	32770730	+	0	NA	exon (NM_020805, exon 2 of 9)	exon (NM_020805, exon 2 of 9)	2558	NM_020805	57565		NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding
11799	chr1	92587021	92587580	+	0	NA	intron (NM_001377211, intron 17 of 18)	intron (NM_001377211, intron 17 of 18)	-100375	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
110084	chr19	1514971	1515430	+	0	NA	Intergenic	Intergenic	-2181	NM_213604	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
15791	chr1	151251201	151252080	+	0	NA	Intergenic	AluSz|SINE|Alu	-3094	NM_002810	5710		NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	proteasome 26S subunit ubiquitin receptor, non-ATPase 4	protein-coding
3417	chr1	15815471	15815900	+	0	NA	Intergenic	Intergenic	-7986	NM_001089591	440567		NM_001089591	ENSG00000233954	UQCRHL	hCG25371	ubiquinol-cytochrome c reductase hinge protein like	protein-coding
100507	chr17	62045551	62045850	+	0	NA	intron (NM_005121, intron 3 of 29)	intron (NM_005121, intron 3 of 29)	19578	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
165624	chr3	101707251	101707600	+	0	NA	Intergenic	L1ME2z|LINE|L1	-5009	NR_002941	285359		NR_002941		PDCL3P4	-	PDCL3 pseudogene 4	pseudo
230509	chr9	128275251	128277350	+	0	NA	promoter-TSS (NM_001318089)	promoter-TSS (NM_001318089)	24	NM_001040011	375757		NM_001040011	ENSG00000175854	SWI5	C9orf119|SAE3	SWI5 homologous recombination repair protein	protein-coding
654	chr1	1356701	1357400	+	0	NA	intron (NM_001282583, intron 1 of 9)	intron (NM_001282583, intron 1 of 9)	1497	NM_001282585	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
60742	chr13	44470921	44471200	+	0	NA	intron (NM_183422, intron 1 of 2)	Tigger15a|DNA|TcMar-Tigger	3241	NM_001243798	8848		NM_006022	ENSG00000102804	TSC22D1	HUCEP-2|Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
231111	chr9	129818151	129818450	+	0	NA	intron (NM_000113, intron 4 of 4)	AluSz6|SINE|Alu	5836	NM_000113	1861		NM_000113	ENSG00000136827	TOR1A	AMC5|DQ2|DYT1	torsin family 1 member A	protein-coding
48875	chr12	12468801	12469000	+	0	NA	3' UTR (NM_001300742, exon 4 of 4).2	3' UTR (NM_001300742, exon 4 of 4).2	93963	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
144435	chr20	35463301	35464050	+	0	NA	intron (NM_007186, intron 5 of 34)	intron (NM_007186, intron 5 of 34)	3692	NM_001318219	11190		NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1|CRDHL2	centrosomal protein 250	protein-coding
156186	chr22	40250551	40250850	+	0	NA	intron (NM_015088, intron 2 of 20)	intron (NM_015088, intron 2 of 20)	72775	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
145033	chr20	38078121	38078380	+	0	NA	intron (NM_021215, intron 6 of 6)	L2c|LINE|L2	44504	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
119400	chr19	40234221	40234480	+	0	NA	intron (NM_001243027, intron 13 of 13)	intron (NM_001243027, intron 13 of 13)	-7661	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
32407	chr10	102441721	102441980	+	0	NA	Intergenic	AluJb|SINE|Alu	5338	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B|mir-146b	microRNA 146b	ncRNA
120250	chr19	42421171	42421780	+	0	NA	intron (NM_005357, intron 1 of 9)	intron (NM_005357, intron 1 of 9)	-2280	NR_073179	100996307		NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
56414	chr12	113297571	113297730	+	0	NA	3' UTR (NM_001351346, exon 29 of 29)	3' UTR (NM_001351346, exon 29 of 29)	6127	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
190157	chr5	178122851	178122950	+	0	NA	3' UTR (NM_015111, exon 5 of 5)	3' UTR (NM_015111, exon 5 of 5)	-8061	NM_001288795	64777		NM_022762	ENSG00000145916	RMND5B	GID2|GID2B	required for meiotic nuclear division 5 homolog B	protein-coding
212006	chr7	114784151	114784250	+	0	NA	Intergenic	Intergenic	130855	NR_037439	100500896		NR_037439	ENSG00000272230	MIR3666	-	microRNA 3666	ncRNA
39702	chr11	61745071	61745430	+	0	NA	3' UTR (NM_006133, exon 20 of 20)	3' UTR (NM_006133, exon 20 of 20)	-7386	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
127082	chr2	37584101	37584580	+	0	NA	Intergenic	Intergenic	87302	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
135172	chr2	157874301	157874600	+	0	NA	intron (NM_001347666, intron 1 of 11)	intron (NM_001347666, intron 1 of 11)	549	NM_001105	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
15982	chr1	151941251	151942130	+	0	NA	Intergenic	Intergenic	-32179	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
31953	chr10	100677371	100677730	+	0	NA	Intergenic	Intergenic	-57846	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
188068	chr5	150059571	150059730	+	0	NA	intron (NR_164679, intron 13 of 19)	intron (NR_164679, intron 13 of 19)	26904	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
232164	chr9	134141971	134142200	+	0	NA	intron (NM_001384412, intron 5 of 13)	intron (NM_001384412, intron 5 of 13)	5664	NM_001384411	11091		NM_017588	ENSG00000196363	WDR5	BIG-3|BIG3|CFAP89|SWD3	WD repeat domain 5	protein-coding
159928	chr3	17022671	17023390	+	0	NA	intron (NM_015184, intron 3 of 5)	intron (NM_015184, intron 3 of 5)	89834	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
8057	chr1	38861301	38861700	+	0	NA	TTS (NR_037633)	TTS (NR_037633)	-1728	NM_022157	64121		NM_022157	ENSG00000116954	RRAGC	GTR2|LNGODS|LNGOS|RAGC|TIB929	Ras related GTP binding C	protein-coding
161855	chr3	45795571	45797300	+	0	NA	5' UTR (NM_020208, exon 1 of 11)	5' UTR (NM_020208, exon 1 of 11)	101	NM_001385683	54716		NM_020208	ENSG00000163817	SLC6A20	IMINO|SIT1|XT3|Xtrp3	solute carrier family 6 member 20	protein-coding
158238	chr22	50292551	50293180	+	0	NA	intron (NM_001376869, intron 1 of 35)	intron (NM_001376869, intron 1 of 35)	7470	NM_001376883	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
83109	chr16	22472321	22472980	+	0	NA	intron (NR_027154, intron 11 of 28)	intron (NR_027154, intron 11 of 28)	-31799	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
149507	chr21	32624521	32624980	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11879	NM_001350335	56683		NM_017835	ENSG00000159079	CFAP298	C21orf48|C21orf59|CILD26|DNAAF16|FBB18|Kur	cilia and flagella associated protein 298	protein-coding
21714	chr1	206751341	206751450	+	0	NA	Intergenic	MER5C|DNA|hAT-Charlie	19208	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
142368	chr20	3785921	3787530	+	0	NA	promoter-TSS (NM_001287516)	promoter-TSS (NM_001287516)	15	NM_001810	1059		NM_001810	ENSG00000125817	CENPB	-	centromere protein B	protein-coding
162914	chr3	49413701	49414200	+	0	NA	intron (NM_022171, intron 2 of 2)	intron (NM_022171, intron 2 of 2)	1744	NM_022171	6988		NM_022171	ENSG00000145022	TCTA	-	T cell leukemia translocation altered	protein-coding
87127	chr16	68847351	68847880	+	0	NA	intron (NM_024562, intron 1 of 17)	intron (NM_024562, intron 1 of 17)	4084	NM_024562	79613		NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog	protein-coding
134216	chr2	134670101	134671120	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	48390	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
207267	chr7	43956071	43956230	+	0	NA	TTS (NM_015983)	TTS (NM_015983)	29714	NM_015983	51619		NM_015983	ENSG00000078967	UBE2D4	HBUCE1	ubiquitin conjugating enzyme E2 D4 (putative)	protein-coding
21675	chr1	206706301	206706950	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	21720	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
16840	chr1	155683401	155683800	+	0	NA	intron (NM_139121, intron 1 of 10)	AluSz|SINE|Alu	-3771	NM_001198899	55249		NM_018253	ENSG00000163374	YY1AP1	GRNG|HCCA1|HCCA2|YY1AP	YY1 associated protein 1	protein-coding
137269	chr2	194491451	194491750	+	0	NA	Intergenic	Intergenic	147331	NR_110222	101927406		NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
175249	chr4	61938571	61938800	+	0	NA	intron (NM_001322246, intron 14 of 25)	MLT1N2|LTR|ERVL-MaLR	223080	NR_110595	101927186		NR_110595		ADGRL3-AS1	LPHN3-AS1	ADGRL3 antisense RNA 1	ncRNA
165723	chr3	103561971	103562230	+	0	NA	Intergenic	L1HS|LINE|L1	-37984	NR_039611	100616336		NR_039611	ENSG00000265328	MIR548AB	-	microRNA 548ab	ncRNA
210287	chr7	99427601	99427800	+	0	NA	intron (NM_015545, intron 5 of 7)	SVA_D|Retroposon|SVA	11098	NM_015545	26024		NM_015545	ENSG00000106246	PTCD1	-	pentatricopeptide repeat domain 1	protein-coding
38750	chr11	47087801	47088000	+	0	NA	intron (NM_001003676, intron 3 of 7)	MLT1F1|LTR|ERVL-MaLR	88979	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
60308	chr13	40648271	40648430	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	18291	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
87329	chr16	70287221	70287500	+	0	NA	intron (NM_001605, intron 1 of 20)	AluSx1|SINE|Alu	2146	NM_001605	16		NM_001605	ENSG00000090861	AARS1	AARS|CMT2N|DEE29|EIEE29|HDLS2|TTD8	alanyl-tRNA synthetase 1	protein-coding
224682	chr9	21213621	21214080	+	0	NA	Intergenic	Intergenic	3461	NM_002173	3449		NM_002173	ENSG00000147885	IFNA16	IFN-alpha-16|IFN-alphaO	interferon alpha 16	protein-coding
99952	chr17	57407251	57407550	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	116197	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
130035	chr2	74416221	74417500	+	0	NA	intron (NM_001316764, intron 1 of 2)	intron (NM_001316764, intron 1 of 2)	857	NM_001145054	388963		NM_001145054	ENSG00000284308	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
17374	chr1	156573721	156574250	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	-1420	NM_178229	128239		NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
196829	chr6	46650051	46650350	+	0	NA	intron (NM_001278738, intron 1 of 11)	LTR52|LTR|ERVL	2618	NM_016593	51302		NM_016593	ENSG00000146233	CYP39A1	-	cytochrome P450 family 39 subfamily A member 1	protein-coding
30239	chr10	75014501	75015350	+	0	NA	intron (NM_012330, intron 13 of 17).2	intron (NM_012330, intron 13 of 17).2	-6808	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
92735	chr17	14305951	14306250	+	0	NA	TTS (NR_026880)	TTS (NR_026880)	2360	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
221002	chr8	115666201	115666780	+	0	NA	intron (NM_001282903, intron 1 of 6)	intron (NM_001282903, intron 1 of 6)	1523	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
204763	chr7	5601201	5601400	+	0	NA	intron (NM_003088, intron 1 of 4)	AluSx|SINE|Alu	8484	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
63885	chr14	21840871	21841480	+	0	NA	Intergenic	Intergenic	-170158	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
218780	chr8	58989121	58989380	+	0	NA	intron (NM_014729, intron 1 of 8)	AluSx|SINE|Alu	129897	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
83307	chr16	24540681	24541080	+	0	NA	intron (NM_032626, intron 1 of 2)	intron (NM_032626, intron 1 of 2)	1293	NM_032626	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
26741	chr10	22692301	22692880	+	0	NA	intron (NM_005028, intron 1 of 9)	L4_C_Mam|LINE|RTE-X	21518	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
91703	chr17	6453201	6453400	+	0	NA	3' UTR (NM_031220, exon 20 of 20)	3' UTR (NM_031220, exon 20 of 20)	8845	NM_001195228	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
132333	chr2	105468301	105468700	+	0	NA	Intergenic	L2|LINE|L2	-29971	NM_001374399	2274		NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
30988	chr10	88090771	88090930	+	0	NA	Intergenic	Intergenic	227225	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
38270	chr11	39371021	39371700	+	0	NA	Intergenic	LTR12F|LTR|ERV1	722502	NR_120553	101928536		NR_120553	ENSG00000254562	LINC01493	-	long intergenic non-protein coding RNA 1493	ncRNA
84659	chr16	30743771	30744130	+	0	NA	3' UTR (NM_001256829, exon 3 of 3)	3' UTR (NM_001256829, exon 3 of 3)	3308	NM_001256829	100862671		NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
206941	chr7	38239751	38240050	+	0	NA	Intergenic	Intergenic	33747	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
47616	chr12	6069501	6069900	+	0	NA	intron (NM_000552, intron 10 of 51)	intron (NM_000552, intron 10 of 51)	-29517	NR_145989	109729112		NR_145989		SNORA120	-	small nucleolar RNA, H/ACA box 120	snoRNA
128757	chr2	62200201	62201230	+	0	NA	intron (NM_006577, intron 1 of 1)	L1ME3|LINE|L1	4600	NM_006577	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
82782	chr16	21449771	21450650	+	0	NA	intron (NR_027155, intron 25 of 28)	intron (NR_027155, intron 25 of 28)	-15755	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
115595	chr19	16032421	16033050	+	0	NA	promoter-TSS (NR_024335)	promoter-TSS (NR_024335)	-978	NR_024335	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
155515	chr22	38688471	38688630	+	0	NA	intron (NM_014876, intron 4 of 4)	AluSq2|SINE|Alu	6593	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
186205	chr5	134364851	134364950	+	0	NA	intron (NM_001300853, intron 1 of 12)	AluSx|SINE|Alu	2174	NM_016508	51265		NM_016508	ENSG00000006837	CDKL3	NKIAMRE	cyclin dependent kinase like 3	protein-coding
43575	chr11	83069251	83069550	+	0	NA	intron (NM_014488, intron 1 of 5)	intron (NM_014488, intron 1 of 5)	2062	NM_001286061	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
51441	chr12	52038571	52039030	+	0	NA	intron (NM_001202234, intron 1 of 7)	L3|LINE|CR1	1085	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
180342	chr5	6714301	6715150	+	0	NA	intron (NM_001171805, intron 1 of 12)	CpG-21953	1293	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
98900	chr17	48590101	48590950	+	0	NA	promoter-TSS (NM_001384747)	promoter-TSS (NM_001384747)	105	NR_033201	404266		NR_033201	ENSG00000233101	HOXB-AS3	-	HOXB cluster antisense RNA 3	ncRNA
55449	chr12	104598851	104598950	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	7267	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
211710	chr7	106867551	106868130	+	0	NA	exon (NM_002649, exon 2 of 11)	exon (NM_002649, exon 2 of 11)	2361	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
54476	chr12	92032071	92033000	+	0	NA	intron (NR_132341, intron 1 of 4)	MIRb|SINE|MIR	109178	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
27549	chr10	32338751	32338850	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	8358	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
220447	chr8	100317421	100317900	+	0	NA	intron (NM_001280539, intron 1 of 10)	L4_A_Mam|LINE|RTE-X	-7707	NM_183419	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
188172	chr5	150481471	150481630	+	0	NA	intron (NR_105061, intron 2 of 2)	L2b|LINE|L2	4442	NR_105061	102546298		NR_105061	ENSG00000254333	NDST1-AS1	-	NDST1 antisense RNA 1	ncRNA
29956	chr10	73495141	73496500	+	0	NA	promoter-TSS (NR_132103)	promoter-TSS (NR_132103)	68	NR_132103	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
234501	chrX	19333901	19334600	+	0	NA	Intergenic	Intergenic	-9677	NM_001173455	5160		NM_000284	ENSG00000131828	PDHA1	E1alpha|PDHA|PDHAD|PDHCE1A|PHE1A	pyruvate dehydrogenase E1 subunit alpha 1	protein-coding
106191	chr18	10613251	10613350	+	0	NA	intron (NR_146509, intron 2 of 2)	L1MC5|LINE|L1	13120	NR_146509	102724470		NR_146509		LINC01887	-	long intergenic non-protein coding RNA 1887	ncRNA
204664	chr7	5455921	5456180	+	0	NA	intron (NM_001363441, intron 4 of 4)	ERV3-16A3_LTR|LTR|ERVL	-27123	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
69391	chr14	94041251	94041350	+	0	NA	intron (NM_023112, intron 3 of 5)	L2a|LINE|L2	14960	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
26978	chr10	26741321	26741980	+	0	NA	intron (NM_001321979, intron 10 of 11)	intron (NM_001321979, intron 10 of 11)	43949	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
25865	chr10	11246771	11246930	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	81820	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
89487	chr16	89121171	89121400	+	0	NA	intron (NR_147928, intron 8 of 11)	intron (NR_147928, intron 8 of 11)	-15263	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
135068	chr2	156476721	156477280	+	0	NA	intron (NM_000408, intron 2 of 16)	intron (NM_000408, intron 2 of 16)	40621	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
177048	chr4	107932951	107933050	+	0	NA	promoter-TSS (NR_125929)	promoter-TSS (NR_125929)	-881	NR_125929	101929595		NR_125929	ENSG00000245293	CYP2U1-AS1	-	CYP2U1 and SGMS2 antisense RNA 1	ncRNA
121909	chr19	48404651	48405230	+	0	NA	exon (NM_000836, exon 4 of 14)	exon (NM_000836, exon 4 of 14)	11272	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
129041	chr2	65053071	65054100	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-2831	NM_001319101	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
82991	chr16	22034751	22035130	+	0	NA	intron (NM_001164579, intron 1 of 2)	AluJb|SINE|Alu	26829	NM_001164579	730094		NM_173501	ENSG00000185716	MOSMO	ATTHOG|BC030336|C16orf52	modulator of smoothened	protein-coding
211567	chr7	105658171	105658330	+	0	NA	intron (NM_001318229, intron 3 of 9)	intron (NM_001318229, intron 3 of 9)	20905	NM_001318229	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
34088	chr10	125157671	125158030	+	0	NA	intron (NM_001290214, intron 1 of 10)	intron (NM_001290214, intron 1 of 10)	927	NM_001321013	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
17	chr1	28871	29850	+	0	NA	promoter-TSS (NR_024540)	promoter-TSS (NR_024540)	10	NR_024540	653635		NR_024540		WASH7P	FAM39F|WASH5P	WASP family homolog 7, pseudogene	pseudo
75730	chr15	68224601	68225100	+	0	NA	intron (NM_017882, intron 1 of 6)	intron (NM_017882, intron 1 of 6)	4878	NM_017882	54982		NM_017882	ENSG00000128973	CLN6	CLN4A|CLN6A|HsT18960|nclf	CLN6 transmembrane ER protein	protein-coding
225527	chr9	35739701	35739900	+	0	NA	exon (NM_020944, exon 9 of 17)	exon (NM_020944, exon 9 of 17)	6878	NR_106912	102466201		NR_106912	ENSG00000273945	MIR6853	hsa-mir-6853	microRNA 6853	ncRNA
4284	chr1	19793451	19793950	+	0	NA	intron (NM_001349114, intron 2 of 16)	intron (NM_001349114, intron 2 of 16)	5649	NM_001349115	255104		NM_181719	ENSG00000162542	TMCO4	-	transmembrane and coiled-coil domains 4	protein-coding
25890	chr10	11268921	11269180	+	0	NA	intron (NM_001326330, intron 6 of 12)	intron (NM_001326330, intron 6 of 12)	75624	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
165170	chr3	72347801	72348480	+	0	NA	Intergenic	Intergenic	98483	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
57202	chr12	121490721	121491200	+	0	NA	intron (NM_001005366, intron 12 of 22)	intron (NM_001005366, intron 12 of 22)	-46608	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
212494	chr7	128564971	128565450	+	0	NA	Intergenic	L1MD2|LINE|L1	-76031	NR_024368	402483		NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
121659	chr19	47492071	47492780	+	0	NA	intron (NR_038456, intron 7 of 11)	intron (NR_038456, intron 7 of 11)	8143	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
202210	chr6	156781951	156783350	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-2919	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
163306	chr3	50348951	50349400	+	0	NA	intron (NM_006545, intron 4 of 10)	MIR3|SINE|MIR	1600	NM_006545	10641		NM_006545	ENSG00000114388	NPRL2	FFEVF2|NPR2|NPR2L|TUSC4	NPR2 like, GATOR1 complex subunit	protein-coding
175276	chr4	67532851	67533550	+	0	NA	intron (NR_155754, intron 4 of 18)	THE1A|LTR|ERVL-MaLR	12303	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
191470	chr6	11095501	11095800	+	0	NA	intron (NM_001135575, intron 1 of 1)	AluSq|SINE|Alu	1816	NM_001135575	221710		NM_001135575	ENSG00000224531	SMIM13	C6orf228	small integral membrane protein 13	protein-coding
137137	chr2	191049251	191049350	+	0	NA	intron (NM_003151, intron 14 of 23)	AluY|SINE|Alu	27774	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
6135	chr1	27364951	27367800	+	0	NA	exon (NM_001297609, exon 1 of 28)	exon (NM_001297609, exon 1 of 28)	586	NM_001297609	9064		NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
14435	chr1	144383851	144384150	+	0	NA	Intergenic	Intergenic	-10341	NM_001144032	730262		NM_001144032	ENSG00000271567	PPIAL4E	COAS2|PPIAL4F	peptidylprolyl isomerase A like 4E	protein-coding
119622	chr19	40787271	40787630	+	0	NA	intron (NR_037791, intron 7 of 11)	AluSq2|SINE|Alu	9203	NM_016154	53916		NM_016154	ENSG00000167578	RAB4B	-	RAB4B, member RAS oncogene family	protein-coding
207139	chr7	43108371	43108650	+	0	NA	Intergenic	MER74B|LTR|ERVL	-4137	NM_015052	23072		NM_015052	ENSG00000002746	HECW1	NEDL1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding
123950	chr19	55391301	55391880	+	0	NA	exon (NM_001136135, exon 5 of 5)	exon (NM_001136135, exon 5 of 5)	3409	NR_106863	102465483		NR_106863	ENSG00000284029	MIR6805	hsa-mir-6805	microRNA 6805	ncRNA
140890	chr2	237662551	237663350	+	0	NA	intron (NM_001137550, intron 1 of 23)	MER66B|LTR|ERV1	-29214	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
232932	chr9	136901351	136904150	+	0	NA	intron (NM_021138, intron 4 of 10)	intron (NM_021138, intron 4 of 10)	16017	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
9178	chr1	45595001	45595850	+	0	NA	intron (NM_001195193, intron 2 of 12)	L2|LINE|L2	11384	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
135096	chr2	157363621	157363980	+	0	NA	Intergenic	Intergenic	16709	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
65990	chr14	58107971	58108200	+	0	NA	intron (NM_001001872, intron 4 of 7)	intron (NM_001001872, intron 4 of 7)	44128	NM_001320173	145407		NM_001001872	ENSG00000139971	ARMH4	C14orf37|UT2|c14_5376	armadillo like helical domain containing 4	protein-coding
142431	chr20	3912671	3912830	+	0	NA	intron (NM_153640, intron 4 of 6)	AluSg|SINE|Alu	-4744	NR_029519	406896		NR_029519	ENSG00000199024	MIR103A2	MIR103-2|MIRN103-2|mir-103a-2	microRNA 103a-2	ncRNA
66171	chr14	60647171	60647800	+	0	NA	intron (NM_005982, intron 1 of 1)	CpG	-1163	NR_162089	113218481		NR_162089		MIR9718	-	microRNA 9718	ncRNA
83936	chr16	29106251	29106950	+	0	NA	intron (NR_003369, intron 15 of 16)	intron (NR_003369, intron 15 of 16)	31758	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
46588	chr11	128517271	128517580	+	0	NA	intron (NM_001143820, intron 3 of 9)	MIRc|SINE|MIR	4885	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
102234	chr17	75244401	75245130	+	0	NA	intron (NM_001172703, intron 3 of 16)	intron (NM_001172703, intron 3 of 16)	16841	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
46312	chr11	125062651	125063680	+	0	NA	promoter-TSS (NM_198277)	promoter-TSS (NM_198277)	-140	NM_198277	219855		NM_198277	ENSG00000134955	SLC37A2	SPX2|pp11662	solute carrier family 37 member 2	protein-coding
188404	chr5	154044401	154044900	+	0	NA	intron (NM_001242336, intron 1 of 2)	intron (NM_001242336, intron 1 of 2)	5683	NM_005927	4238		NM_005927	ENSG00000037749	MFAP3	-	microfibril associated protein 3	protein-coding
110536	chr19	2086451	2086550	+	0	NA	intron (NM_130807, intron 1 of 4)	AluSx|SINE|Alu	9826	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
225845	chr9	38066701	38067600	+	0	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	2077	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
223106	chr8	143438551	143438850	+	0	NA	intron (NM_015117, intron 11 of 11)	intron (NM_015117, intron 11 of 11)	-7968	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
152430	chr22	20584371	20584700	+	0	NA	intron (NM_001003891, intron 14 of 17)	intron (NM_001003891, intron 14 of 17)	76488	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
70759	chr14	103422271	103422430	+	0	NA	intron (NM_002376, intron 2 of 15)	AluSx|SINE|Alu	36935	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
69856	chr14	99263801	99264180	+	0	NA	intron (NM_022898, intron 1 of 2)	intron (NM_022898, intron 1 of 2)	8207	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
18291	chr1	161131201	161133930	+	0	NA	promoter-TSS (NM_001039712)	promoter-TSS (NM_001039712)	-99	NM_001039712	9191		NM_004216	ENSG00000158796	DEDD	CASP8IP1|DEDD1|DEDPro1|DEFT|FLDED-1|FLDED1|KE05	death effector domain containing	protein-coding
225370	chr9	34984021	34984480	+	0	NA	Intergenic	Intergenic	5129	NR_109756	101926900		NR_109756	ENSG00000281491	DNAJB5-DT	DNAJB5-AS1	DNAJB5 divergent transcript	ncRNA
171935	chr4	877551	877880	+	0	NA	exon (NM_005255, exon 16 of 28)	exon (NM_005255, exon 16 of 28)	-51586	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
123600	chr19	54481171	54481590	+	0	NA	Intergenic	Intergenic	-8084	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
182818	chr5	69098121	69098380	+	0	NA	intron (NM_001251969, intron 1 of 2)	AluSx1|SINE|Alu	4236	NM_001251969	64924		NM_022902	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 member 5	protein-coding
213987	chr7	142814251	142814580	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-40599	NM_001280794	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
150891	chr21	44140801	44141780	+	0	NA	exon (NM_001320383, exon 6 of 6).2	exon (NM_001320383, exon 6 of 6).2	7607	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
110811	chr19	2472621	2473050	+	0	NA	Intergenic	Intergenic	-3292	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
65965	chr14	56173251	56173550	+	0	NA	intron (NM_021255, intron 1 of 5)	MER5B|DNA|hAT-Charlie	54989	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
66878	chr14	65090451	65090550	+	0	NA	intron (NR_045122, intron 1 of 2)	intron (NR_045122, intron 1 of 2)	582	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
174112	chr4	36197601	36197800	+	0	NA	intron (NR_146894, intron 6 of 32)	MER52A|LTR|ERV1	46239	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
237705	chrX	124392571	124392730	+	0	NA	intron (NM_001163279, intron 27 of 31)	intron (NM_001163279, intron 27 of 31)	46087	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
111633	chr19	4153251	4153800	+	0	NA	promoter-TSS (NM_001271997)	promoter-TSS (NM_001271997)	-106	NM_001271997	84699		NM_032607	ENSG00000060566	CREB3L3	CREB-H|CREBH|HYST1481|HYTG2	cAMP responsive element binding protein 3 like 3	protein-coding
10057	chr1	58702801	58703000	+	0	NA	Intergenic	L2b|LINE|L2	-2838	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
202037	chr6	153002051	153003880	+	0	NA	promoter-TSS (NM_001301871)	promoter-TSS (NM_001301871)	-150	NM_001301872	54516		NM_019041	ENSG00000112031	MTRF1L	HMRF1L|MRF1L|mtRF1a	mitochondrial translation release factor 1 like	protein-coding
58994	chr13	20049551	20050030	+	0	NA	intron (NM_001353161, intron 14 of 26)	intron (NM_001353161, intron 14 of 26)	-52911	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
180193	chr5	1491421	1491750	+	0	NA	intron (NM_024830, intron 3 of 13)	intron (NM_024830, intron 3 of 13)	19271	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
132039	chr2	101004471	101005330	+	0	NA	intron (NM_001098577, intron 3 of 4)	intron (NM_001098577, intron 3 of 4)	2611	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
71327	chr14	105412721	105413200	+	0	NA	3' UTR (NM_001195082, exon 4 of 4)	3' UTR (NM_001195082, exon 4 of 4)	6779	NR_125384	100507437		NR_125384	ENSG00000251602	MTA1-DT	-	MTA1 divergent transcript	ncRNA
35250	chr11	854151	854450	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	9854	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
109890	chr19	1264321	1265300	+	0	NA	Intergenic	Intergenic	-4458	NM_001280	1153		NM_001280	ENSG00000099622	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
88646	chr16	85642351	85642950	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	29328	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
222748	chr8	141412171	141412780	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-8913	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
185715	chr5	132025671	132025830	+	0	NA	Intergenic	L2a|LINE|L2	-13682	NM_001205250	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
111734	chr19	4356451	4356750	+	0	NA	intron (NM_032868, intron 8 of 11)	intron (NM_032868, intron 8 of 11)	13038	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
102380	chr17	75571051	75571800	+	0	NA	intron (NM_004524, intron 17 of 24)	intron (NM_004524, intron 17 of 24)	-16633	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
4952	chr1	23974571	23975080	+	0	NA	intron (NM_001191007, intron 3 of 5)	AluSx|SINE|Alu	5502	NM_001191009	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
97967	chr17	45244051	45245100	+	0	NA	intron (NM_005892, intron 19 of 26)	intron (NM_005892, intron 19 of 26)	-3350	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
168477	chr3	143169721	143170380	+	0	NA	Intergenic	LTR107_Mam|LTR|LTR	50279	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
7413	chr1	32952451	32953250	+	0	NA	intron (NM_001127361, intron 1 of 8)	AluJr|SINE|Alu	11959	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
107408	chr18	46156601	46157280	+	0	NA	Intergenic	Intergenic	-17082	NM_001008239	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
23985	chr1	235217401	235217800	+	0	NA	intron (NM_016374, intron 16 of 23)	intron (NM_016374, intron 16 of 23)	-27484	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
148195	chr20	63555451	63555630	+	0	NA	intron (NM_001319153, intron 1 of 1)	intron (NM_001319153, intron 1 of 1)	1381	NM_001319152	79025		NM_024059	ENSG00000125531	FNDC11	C20orf195	fibronectin type III domain containing 11	protein-coding
14957	chr1	147892451	147892950	+	0	NA	Intergenic	Intergenic	-10095	NM_005267	2703		NM_005267	ENSG00000121634	GJA8	CAE|CAE1|CTRCT1|CX50|CZP1|MP70	gap junction protein alpha 8	protein-coding
136695	chr2	181130751	181131050	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	7063	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
18562	chr1	162788821	162789500	+	0	NA	Intergenic	PABL_A|LTR|ERV1	-1542	NM_001304513	51478		NM_016371	ENSG00000132196	HSD17B7	PRAP|SDR37C1	hydroxysteroid 17-beta dehydrogenase 7	protein-coding
16515	chr1	154929021	154929300	+	0	NA	exon (NM_001323011, exon 3 of 5)	exon (NM_001323011, exon 3 of 5)	7559	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
9218	chr1	45676851	45677350	+	0	NA	intron (NM_021639, intron 2 of 12)	AluSz|SINE|Alu	9433	NM_021639	60313		NM_021639	ENSG00000159592	GPBP1L1	SP192	GC-rich promoter binding protein 1 like 1	protein-coding
216123	chr8	11409501	11409730	+	0	NA	intron (NR_026814, intron 3 of 6)	intron (NR_026814, intron 3 of 6)	41213	NR_026814	83656		NM_054017	ENSG00000184608	FAM167A-AS1	C8orf12	FAM167A antisense RNA 1	ncRNA
207248	chr7	43836271	43836530	+	0	NA	Intergenic	AluSx1|SINE|Alu	33117	NM_032014	64951		NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
112862	chr19	7594101	7594300	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1663	NM_020902	57662		NM_020902	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA|PPP1R80	calmodulin regulated spectrin associated protein family member 3	protein-coding
154908	chr22	37184551	37185050	+	0	NA	intron (NM_031910, intron 2 of 2)	L2a|LINE|L2	3447	NM_031910	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
20636	chr1	199590851	199590950	+	0	NA	Intergenic	L2a|LINE|L2	-436810	NM_003822	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
160131	chr3	20046451	20046830	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	6194	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
142347	chr20	3749651	3750500	+	0	NA	exon (NM_052970, exon 11 of 13)	exon (NM_052970, exon 11 of 13)	17390	NM_001197327	116835		NM_052970	ENSG00000132622	HSPA12B	C20orf60	heat shock protein family A (Hsp70) member 12B	protein-coding
15480	chr1	150367771	150368200	+	0	NA	intron (NM_015203, intron 1 of 10)	L2a|LINE|L2	3874	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
99818	chr17	53105851	53106200	+	0	NA	Intergenic	Intergenic	120520	NR_164143	100506650		NR_164143	ENSG00000227011	LINC02876	C17orf112	long intergenic non-protein coding RNA 2876	ncRNA
69699	chr14	98181221	98181480	+	0	NA	Intergenic	Intergenic	-203226	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
142223	chr20	3082571	3084430	+	0	NA	intron (NM_000490, intron 1 of 2)	CpG-17384	1224	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
103111	chr17	77365721	77366250	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	-7352	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
215874	chr8	7616571	7616730	+	0	NA	Intergenic	L2b|LINE|L2	-42252	NR_046343								
93290	chr17	18140921	18142100	+	0	NA	intron (NM_016239, intron 21 of 64)	MER91B|DNA|hAT-Tip100	-23949	NR_164159	105371566		NR_164159		LOC105371566	-	uncharacterized LOC105371566	ncRNA
236171	chrX	65407371	65407730	+	0	NA	Intergenic	CpG	-81185	NM_001010888	340554		NM_001010888	ENSG00000102053	ZC3H12B	CXorf32|MCPIP2	zinc finger CCCH-type containing 12B	protein-coding
172010	chr4	964521	965030	+	0	NA	intron (NM_001347, intron 15 of 22)	intron (NM_001347, intron 15 of 22)	8794	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
6867	chr1	31162421	31163050	+	0	NA	Intergenic	AluSq|SINE|Alu	77152	NM_024522	79570		NM_024522	ENSG00000084628	NKAIN1	FAM77C	sodium/potassium transporting ATPase interacting 1	protein-coding
89039	chr16	88430151	88431400	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-22505	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
110732	chr19	2321671	2322600	+	0	NA	intron (NM_016199, intron 3 of 3)	intron (NM_016199, intron 3 of 3)	6451	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
154658	chr22	36346121	36346730	+	0	NA	intron (NM_002473, intron 2 of 40)	intron (NM_002473, intron 2 of 40)	41542	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
158176	chr22	50220451	50220780	+	0	NA	exon (NM_020461, exon 16 of 25)	exon (NM_020461, exon 16 of 25)	19604	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
127633	chr2	43132401	43133050	+	0	NA	Intergenic	Intergenic	-30280	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
27287	chr10	30373551	30374280	+	0	NA	Intergenic	Intergenic	-2008	NR_120609	729668		NR_003524		GOLGA2P6	-	GOLGA2 pseudogene 6	pseudo
188047	chr5	149853021	149853300	+	0	NA	3' UTR (NM_001172698, exon 11 of 11)	3' UTR (NM_001172698, exon 11 of 11)	79817	NR_110534	644762		NR_110534		MFFP2	-	MFF pseudogene 2	pseudo
93265	chr17	18036421	18036880	+	0	NA	intron (NM_145691, intron 1 of 7)	intron (NM_145691, intron 1 of 7)	2518	NM_145691	91647		NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|LP3663|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
144527	chr20	35710051	35710750	+	0	NA	intron (NM_184234, intron 12 of 16)	L3|LINE|CR1	10995	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
99111	chr17	49211501	49211700	+	0	NA	intron (NM_001135186, intron 1 of 7)	MIRb|SINE|MIR	893	NM_016428	51225		NM_016428	ENSG00000108798	ABI3	NESH|SSH3BP3	ABI family member 3	protein-coding
86953	chr16	68119921	68120900	+	0	NA	intron (NM_173165, intron 1 of 9)	AluSz6|SINE|Alu	35040	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
2158	chr1	8421371	8421530	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	2382	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
87621	chr16	74389071	74389230	+	0	NA	intron (NM_001306094, intron 4 of 6)	intron (NM_001306094, intron 4 of 6)	11198	NM_001306094	440348		NM_001018059	ENSG00000196436	NPIPB15	A-761H5.4|NPIPL2	nuclear pore complex interacting protein family member B15	protein-coding
141258	chr2	239911401	239911600	+	0	NA	intron (NR_136158, intron 9 of 10)	intron (NR_136158, intron 9 of 10)	31594	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
90632	chr17	1655401	1656200	+	0	NA	intron (NM_006445, intron 36 of 42)	AluY|SINE|Alu	-5934	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
145682	chr20	44993421	44994100	+	0	NA	intron (NM_006282, intron 5 of 10)	AluSq|SINE|Alu	27248	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
73343	chr15	42065301	42065700	+	0	NA	Intergenic	Intergenic	-14797	NM_001206670	123745		NM_198442	ENSG00000188089	PLA2G4E	-	phospholipase A2 group IVE	protein-coding
150346	chr21	42148051	42148350	+	0	NA	Intergenic	MER51E|LTR|ERV1	-39666	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
75974	chr15	70505601	70505880	+	0	NA	intron (NR_146562, intron 1 of 1)	intron (NR_146562, intron 1 of 1)	188	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
48365	chr12	9429921	9430180	+	0	NA	intron (NR_033399, intron 10 of 26)	MIRb|SINE|MIR	18122	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
189751	chr5	176613501	176613700	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-3444	NM_052899	114787		NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
147392	chr20	58691051	58691750	+	0	NA	intron (NR_037945, intron 9 of 22)	(T)n|Simple_repeat|Simple_repeat	-1400	NM_024663	79716		NM_024663	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase like 1	protein-coding
114420	chr19	12668721	12670750	+	0	NA	promoter-TSS (NM_032332)	promoter-TSS (NM_032332)	-18	NM_032332	84292		NM_032332	ENSG00000123154	WDR83	MORG1	WD repeat domain 83	protein-coding
84351	chr16	30208101	30208430	+	0	NA	Intergenic	Intergenic	-1338	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
80685	chr16	3039421	3039850	+	0	NA	TTS (NR_047572)	TTS (NR_047572)	-2691	NM_001369667	146439		NM_001103175	ENSG00000162069	BICDL2	BICDR-2|BICDR2|CCDC64B	BICD family like cargo adaptor 2	protein-coding
18766	chr1	167506451	167506630	+	0	NA	intron (NM_001378515, intron 1 of 8)	AluSx3|SINE|Alu	11989	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
127734	chr2	43565871	43566430	+	0	NA	intron (NR_144316, intron 15 of 36)	intron (NR_144316, intron 15 of 36)	29824	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
48390	chr12	9617471	9617830	+	0	NA	intron (NR_046450, intron 1 of 4)	intron (NR_046450, intron 1 of 4)	366	NR_046450	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
85015	chr16	31537751	31538050	+	0	NA	Intergenic	L1MA10|LINE|L1	9923	NM_001318222	51327		NM_016633	ENSG00000169877	AHSP	EDRF|ERAF	alpha hemoglobin stabilizing protein	protein-coding
75627	chr15	67149221	67149480	+	0	NA	intron (NM_001145103, intron 1 of 8)	intron (NM_001145103, intron 1 of 8)	11329	NM_001145103	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
92103	chr17	7576171	7576330	+	0	NA	promoter-TSS (NR_002604)	promoter-TSS (NR_002604)	-561	NR_002604	652966		NR_002604	ENSG00000238917	SNORD10	mgU6-77	small nucleolar RNA, C/D box 10	snoRNA
4197	chr1	19442871	19443030	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	41345	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
202128	chr6	154835351	154835680	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	-17845	NR_036100	100422821		NR_036100	ENSG00000264814	MIR1273C	-	microRNA 1273c	ncRNA
13901	chr1	119737221	119737480	+	0	NA	intron (NM_006623, intron 8 of 11)	intron (NM_006623, intron 8 of 11)	25416	NM_006623	26227		NM_006623	ENSG00000092621	PHGDH	3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA	phosphoglycerate dehydrogenase	protein-coding
146753	chr20	50819521	50819780	+	0	NA	intron (NM_198799, intron 2 of 4)	intron (NM_198799, intron 2 of 4)	24589	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
149550	chr21	33127151	33127500	+	0	NA	Intergenic	Intergenic	-3625	NR_109961	101928107		NR_109961	ENSG00000226527	LOC101928107	-	uncharacterized LOC101928107	ncRNA
239345	chrY	19406171	19406530	+	0	NA	Intergenic	MER52D|LTR|ERV1	96803	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
122086	chr19	48737251	48737780	+	0	NA	intron (NM_017805, intron 3 of 11)	intron (NM_017805, intron 3 of 11)	3095	NM_017805	54922		NM_017805	ENSG00000105538	RASIP1	RAIN	Ras interacting protein 1	protein-coding
133488	chr2	119933571	119933730	+	0	NA	intron (NM_002830, intron 14 of 26)	AluSz|SINE|Alu	-79427	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
164267	chr3	57565101	57566100	+	0	NA	3' UTR (NM_177966, exon 3 of 3)	3' UTR (NM_177966, exon 3 of 3)	9326	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
97749	chr17	44399601	44399800	+	0	NA	exon (NM_001002909, exon 8 of 8)	exon (NM_001002909, exon 8 of 8)	-10051	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
7944	chr1	37549321	37549580	+	0	NA	intron (NM_024700, intron 2 of 3)	AluJb|SINE|Alu	4843	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
147143	chr20	56360301	56360500	+	0	NA	intron (NM_080821, intron 1 of 2)	intron (NM_080821, intron 1 of 2)	1426	NM_080821	116151		NM_080821	ENSG00000124098	FAM210B	5A3|C20orf108|dJ1167H4.1	family with sequence similarity 210 member B	protein-coding
91135	chr17	3734301	3734530	+	0	NA	intron (NM_002208, intron 21 of 30)	LTR65|LTR|ERV1	10512	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
84896	chr16	31203611	31204200	+	0	NA	TTS (NR_102400)	TTS (NR_102400)	-1129	NM_145182	29108		NM_013258	ENSG00000103490	PYCARD	ASC|CARD5|TMS|TMS-1|TMS1	PYD and CARD domain containing	protein-coding
13372	chr1	113906371	113906530	+	0	NA	intron (NM_001319947, intron 2 of 3)	intron (NM_001319947, intron 2 of 3)	1124	NM_022836	64858		NM_022836	ENSG00000118655	DCLRE1B	APOLLO|DKCB8|SNM1B|SNMIB	DNA cross-link repair 1B	protein-coding
217002	chr8	23160901	23161380	+	0	NA	intron (NM_003840, intron 1 of 8)	intron (NM_003840, intron 1 of 8)	2887	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
172237	chr4	1344771	1344930	+	0	NA	Intergenic	L2a|LINE|L2	-2358	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
192783	chr6	26540051	26540630	+	0	NA	intron (NM_006353, intron 1 of 1)	AluSz|SINE|Alu	1974	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
168499	chr3	143644571	143644730	+	0	NA	intron (NM_173653, intron 6 of 15)	intron (NM_173653, intron 6 of 15)	203818	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
120207	chr19	42292121	42293100	+	0	NA	exon (NM_001304815, exon 15 of 21)	exon (NM_001304815, exon 15 of 21)	8141	NM_015125	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
190100	chr5	177871671	177872400	+	0	NA	Intergenic	AluSg4|SINE|Alu	-3226	NR_003615	728554		NR_003615	ENSG00000291113	LOC728554	-	THO complex 3 pseudogene	pseudo
227710	chr9	93035321	93035830	+	0	NA	exon (NM_001083536, exon 18 of 18)	exon (NM_001083536, exon 18 of 18)	-20631	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
198661	chr6	107826351	107827000	+	0	NA	Intergenic	Intergenic	-2362	NM_001286408	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
87570	chr16	72172371	72172530	+	0	NA	promoter-TSS (NM_001160213)	promoter-TSS (NM_001160213)	0	NM_001160213	83449		NM_031293	ENSG00000118557	PMFBP1	SPGF31|STAP	polyamine modulated factor 1 binding protein 1	protein-coding
174533	chr4	40190671	40191500	+	0	NA	promoter-TSS (NM_001278368)	promoter-TSS (NM_001278368)	5	NM_001278368	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
159551	chr3	14651201	14652730	+	0	NA	intron (NM_016474, intron 1 of 10)	intron (NM_016474, intron 1 of 10)	203	NM_016474	51244		NM_016474	ENSG00000154781	CCDC174	C3orf19|HSPC212|IHPM|IHPMR|ctr1	coiled-coil domain containing 174	protein-coding
82586	chr16	18792921	18793180	+	0	NA	3' UTR (NM_001313858, exon 6 of 6)	3' UTR (NM_001313858, exon 6 of 6)	-2716	NM_001030009	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
78954	chr15	101294161	101296200	+	0	NA	promoter-TSS (NR_135508)	promoter-TSS (NR_135508)	68	NR_135506	6627		NM_003090	ENSG00000131876	SNRPA1	Lea1|U2A'	small nuclear ribonucleoprotein polypeptide A'	protein-coding
206675	chr7	36386671	36386830	+	0	NA	intron (NM_001100425, intron 1 of 6)	L1ME3C|LINE|L1	-3112	NM_001284301	54443		NM_018685	ENSG00000011426	ANLN	FSGS8|Scraps|scra	anillin, actin binding protein	protein-coding
162563	chr3	48654171	48654700	+	0	NA	exon (NM_001407, exon 7 of 35)	exon (NM_001407, exon 7 of 35)	8451	NM_001407	1951		NM_001407	ENSG00000008300	CELSR3	ADGRC3|CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1	cadherin EGF LAG seven-pass G-type receptor 3	protein-coding
133615	chr2	126656901	126657490	+	0	NA	intron (NM_016815, intron 1 of 2)	intron (NM_016815, intron 1 of 2)	1037	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
81182	chr16	4471371	4472050	+	0	NA	intron (NM_001351995, intron 2 of 5)	L1MB7|LINE|L1	2915	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
203785	chr7	1240951	1241150	+	0	NA	Intergenic	CpG-25321	8178	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
154371	chr22	33853701	33853950	+	0	NA	intron (NM_001362953, intron 1 of 14)	L2a|LINE|L2	19504	NM_001378626	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
137028	chr2	190717671	190718030	+	0	NA	Intergenic	LTR78B|LTR|ERV1	58692	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
96541	chr17	40358271	40359180	+	0	NA	Intergenic	Intergenic	6012	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
21503	chr1	205745151	205745730	+	0	NA	intron (NM_022731, intron 1 of 6)	AluJb|SINE|Alu	4742	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
44153	chr11	96193301	96193500	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-148038	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
220004	chr8	90004971	90006750	+	0	NA	intron (NM_001330575, intron 2 of 11)	MSTB1|LTR|ERVL-MaLR	4383	NM_001359	1666		NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	2,4-dienoyl-CoA reductase 1	protein-coding
100550	chr17	62610651	62610750	+	0	NA	intron (NM_001375269, intron 20 of 20)	L2a|LINE|L2	-16970	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
210051	chr7	95330471	95331130	+	0	NA	Intergenic	Intergenic	-6268	NM_000446	5444		NM_000446	ENSG00000005421	PON1	ESA|MVCD5|PON	paraoxonase 1	protein-coding
6565	chr1	28738751	28738850	+	0	NA	intron (NM_016258, intron 3 of 4)	intron (NM_016258, intron 3 of 4)	1860	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
117909	chr19	32814101	32814300	+	0	NA	intron (NM_001366102, intron 25 of 32)	L2b|LINE|L2	55567	NM_001243036	11136		NM_014270	ENSG00000021488	SLC7A9	BAT1|CSNU3	solute carrier family 7 member 9	protein-coding
138154	chr2	202379121	202380080	+	0	NA	intron (NM_001204, intron 1 of 12)	intron (NM_001204, intron 1 of 12)	3273	NM_001204	659		NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding
220331	chr8	98947101	98947780	+	0	NA	intron (NM_053001, intron 1 of 3)	intron (NM_053001, intron 1 of 3)	2998	NM_001142462	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
119457	chr19	40418401	40418600	+	0	NA	Intergenic	FRAM|SINE|Alu	-5122	NM_181882	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
146654	chr20	50388751	50388930	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	-67498	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
187840	chr5	146947221	146947650	+	0	NA	intron (NM_001271900, intron 2 of 10)	MLT1K|LTR|ERVL-MaLR	-27929	NR_047115	100874361		NR_047115	ENSG00000249553	PPP2R2B-IT1	-	PPP2R2B intronic transcript 1	ncRNA
198805	chr6	109013821	109014280	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	-4495	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
201153	chr6	142925551	142925850	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	19476	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
22535	chr1	222263901	222264100	+	0	NA	Intergenic	L2a|LINE|L2	284104	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
205076	chr7	6638671	6638930	+	0	NA	intron (NM_001278559, intron 2 of 8)	intron (NM_001278559, intron 2 of 8)	1482	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
50799	chr12	49059361	49061100	+	0	NA	5' UTR (NM_003482, exon 1 of 55)	5' UTR (NM_003482, exon 1 of 55)	564	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
187375	chr5	141855171	141856530	+	0	NA	intron (NM_032420, intron 4 of 4)	intron (NM_032420, intron 4 of 4)	10352	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
53204	chr12	62265601	62266250	+	0	NA	intron (NM_001351164, intron 1 of 21)	intron (NM_001351164, intron 1 of 21)	5521	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
189939	chr5	177397601	177397800	+	0	NA	intron (NM_003052, intron 12 of 12)	intron (NM_003052, intron 12 of 12)	2961	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
54115	chr12	76444721	76444980	+	0	NA	intron (NM_001003712, intron 3 of 22)	intron (NM_001003712, intron 3 of 22)	-21565	NM_001319655	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
188229	chr5	150832921	150833050	+	0	NA	Intergenic	AluYj4|SINE|Alu	-13536	NM_001346557	345611		NM_001145805	ENSG00000237693	IRGM	IBD19|IFI1|IRGM1|LRG-47|LRG47	immunity related GTPase M	protein-coding
229480	chr9	122126451	122126550	+	0	NA	Intergenic	Intergenic	-6333	NR_039690	100616312		NR_039690	ENSG00000266583	MIR4478	mir-4478	microRNA 4478	ncRNA
74785	chr15	63272051	63272650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5200	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
117659	chr19	24018771	24019150	+	0	NA	Intergenic	L1PA4|LINE|L1	-14445	NM_001278661	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
227567	chr9	92142271	92142630	+	0	NA	intron (NR_027341, intron 1 of 3)	intron (NR_027341, intron 1 of 3)	983	NR_027341	158314		NR_027341		LINC00475	C9orf44	long intergenic non-protein coding RNA 475	ncRNA
23059	chr1	226629621	226630300	+	0	NA	Intergenic	LTR16D|LTR|ERVL	45108	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
146904	chr20	51540951	51542000	+	0	NA	intron (NM_001258292, intron 1 of 9)	intron (NM_001258292, intron 1 of 9)	1244	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
144845	chr20	36886171	36886330	+	0	NA	intron (NM_080628, intron 4 of 6)	AluJr|SINE|Alu	10112	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
12397	chr1	101293271	101294030	+	0	NA	Intergenic	Intergenic	-30187	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
192684	chr6	26253371	26253800	+	0	NA	Intergenic	Intergenic	1971	NM_003524	8345		NM_003524	ENSG00000275713	H2BC9	H2B/j|H2BFJ|HIST1H2BH	H2B clustered histone 9	protein-coding
19145	chr1	171556051	171556630	+	0	NA	intron (NM_015172, intron 18 of 33)	L1PA6|LINE|L1	-63423	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
123878	chr19	55285301	55286280	+	0	NA	intron (NM_032430, intron 1 of 18)	intron (NM_032430, intron 1 of 18)	1793	NM_032430	84446		NM_032430	ENSG00000160469	BRSK1	SAD-B|hSAD1	BR serine/threonine kinase 1	protein-coding
181344	chr5	40429601	40430600	+	0	NA	Intergenic	Intergenic	-249815	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
144370	chr20	35091151	35091250	+	0	NA	intron (NM_199368, intron 1 of 18)	AluSz6|SINE|Alu	1607	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
105024	chr17	82048521	82049200	+	0	NA	intron (NM_002917, intron 7 of 7)	intron (NM_002917, intron 7 of 7)	2951	NM_002917	5986		NM_002917	ENSG00000169733	RFNG	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
76686	chr15	75735051	75735500	+	0	NA	intron (NR_024595, intron 3 of 4)	LTR13A|LTR|ERVK	4802	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
43603	chr11	83169701	83170530	+	0	NA	intron (NM_015885, intron 8 of 15)	intron (NM_015885, intron 8 of 15)	12984	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
220837	chr8	102863801	102865380	+	0	NA	promoter-TSS (NM_001363013)	promoter-TSS (NM_001363013)	319	NR_126338	100506753		NR_126338		MAILR	AZIN1-AS1|H22954|MAIL1	macrophage interferon regulatory lncRNA	ncRNA
211989	chr7	113623351	113623450	+	0	NA	Intergenic	MER4-int|LTR|ERV1	295609	NM_002711	5506		NM_002711	ENSG00000154415	PPP1R3A	GM|PP1G|PPP1R3	protein phosphatase 1 regulatory subunit 3A	protein-coding
121898	chr19	48389051	48389930	+	0	NA	intron (NM_006801, intron 3 of 4)	intron (NM_006801, intron 3 of 4)	2061	NM_006801	10945		NM_006801	ENSG00000105438	KDELR1	ERD2|ERD2.1|HDEL|PM23	KDEL endoplasmic reticulum protein retention receptor 1	protein-coding
234628	chrX	19879751	19880350	+	0	NA	intron (NM_001353892, intron 1 of 17)	MER20|DNA|hAT-Charlie	7550	NM_001353891	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
12199	chr1	100384621	100384930	+	0	NA	intron (NM_001319210, intron 3 of 16)	Charlie8|DNA|hAT-Charlie	32269	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
154877	chr22	37140601	37141200	+	0	NA	intron (NM_000878, intron 4 of 9)	MIRc|SINE|MIR	9016	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
26824	chr10	24519171	24519330	+	0	NA	intron (NM_019590, intron 10 of 20)	intron (NM_019590, intron 10 of 20)	52719	NM_001282770	56243		NM_019590	ENSG00000120549	KIAA1217	ETL4|SKT	KIAA1217	protein-coding
183403	chr5	77852571	77853150	+	0	NA	Intergenic	Intergenic	-31796	NR_105012	101929154		NR_105012	ENSG00000287162	LOC101929154	-	uncharacterized LOC101929154	ncRNA
35934	chr11	2462251	2462780	+	0	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	1061	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
218919	chr8	60806621	60807030	+	0	NA	intron (NM_017780, intron 6 of 37)	AluJb|SINE|Alu	65566	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
214059	chr7	143387471	143387980	+	0	NA	intron (NM_001362783, intron 4 of 8).2	intron (NM_001362783, intron 4 of 8).2	5039	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
170165	chr3	183586571	183587400	+	0	NA	Intergenic	L2a|LINE|L2	-31279	NM_130446	89857		NM_130446	ENSG00000172578	KLHL6	-	kelch like family member 6	protein-coding
66677	chr14	63937401	63937600	+	0	NA	intron (NM_015180, intron 2 of 114)	L2a|LINE|L2	84496	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
222767	chr8	141630321	141630580	+	0	NA	Intergenic	Intergenic	-123220	NR_102363	389690		NM_207414	ENSG00000226807	MROH5	-	maestro heat like repeat family member 5 (gene/pseudogene)	protein-coding
150379	chr21	42267101	42268180	+	0	NA	intron (NM_207628, intron 4 of 16)	intron (NM_207628, intron 4 of 16)	47742	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
48020	chr12	6940251	6940750	+	0	NA	intron (NM_001007026, intron 7 of 9)	AluSx|SINE|Alu	-2938	NM_001301836	113246		NM_138425	ENSG00000111678	C12orf57	C10|GRCC10	chromosome 12 open reading frame 57	protein-coding
60546	chr13	41469871	41470700	+	0	NA	intron (NM_014059, intron 4 of 4)	intron (NM_014059, intron 4 of 4)	12735	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
224339	chr9	6777201	6777600	+	0	NA	intron (NR_148677, intron 1 of 21)	intron (NR_148677, intron 1 of 21)	19427	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
196410	chr6	43372151	43372450	+	0	NA	Intergenic	AluY|SINE|Alu	-2653	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
167664	chr3	129934471	129934930	+	0	NA	Intergenic	Intergenic	-40020	NM_007117	7200		NM_007117	ENSG00000170893	TRH	Pro-TRH|TRF	thyrotropin releasing hormone	protein-coding
91514	chr17	4952751	4952850	+	0	NA	exon (NM_001374523, exon 3 of 12)	exon (NM_001374523, exon 3 of 12)	1681	NM_001976	2027		NM_001976	ENSG00000108515	ENO3	GSD13|MSE	enolase 3	protein-coding
67331	chr14	69637271	69637630	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	25854	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
128700	chr2	61575421	61575680	+	0	NA	Intergenic	Intergenic	-37194	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
65492	chr14	51876901	51877380	+	0	NA	intron (NM_001243774, intron 1 of 2)	intron (NM_001243774, intron 1 of 2)	16528	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
54534	chr12	92130571	92130730	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	11063	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
15266	chr1	149645701	149645930	+	0	NA	intron (NR_111950, intron 1 of 8)	L1ME3Cz|LINE|L1	38803	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
158149	chr22	50188351	50188850	+	0	NA	intron (NM_001378762, intron 1 of 9)	MLT1A|LTR|ERVL-MaLR	-1987	NM_001320488	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
28355	chr10	47077021	47077280	+	0	NA	Intergenic	L2b|LINE|L2	165428	NM_001042358	26095		NM_015605	ENSG00000204179	PTPN20	CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1	protein tyrosine phosphatase non-receptor type 20	protein-coding
114602	chr19	12953401	12954150	+	0	NA	TTS (NM_001270362)	TTS (NM_001270362)	3448	NM_052850	90480		NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1|mL64	GADD45G interacting protein 1	protein-coding
219240	chr8	66954571	66954730	+	0	NA	intron (NM_001193502, intron 3 of 3)	L1PA2|LINE|L1	7941	NM_001193502	100129654		NM_001193502	ENSG00000261787	TCF24	TCF-24|bHLHa25	transcription factor 24	protein-coding
111082	chr19	3176731	3177600	+	0	NA	Intergenic	Intergenic	-1604	NM_003775	8698		NM_003775	ENSG00000125910	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
66368	chr14	61471471	61472580	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	98169	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
185154	chr5	119327071	119327780	+	0	NA	intron (NM_001286815, intron 2 of 2)	intron (NM_001286815, intron 2 of 2)	-5750	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
39506	chr11	61053121	61053380	+	0	NA	Intergenic	Intergenic	-40713	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
178860	chr4	154490921	154491250	+	0	NA	exon (NM_001358235, exon 1 of 20)	exon (NM_001358235, exon 1 of 20)	714	NM_001142552	54798		NM_017639	ENSG00000197410	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
135229	chr2	159285901	159287250	+	0	NA	5' UTR (NM_001128213, exon 1 of 11)	5' UTR (NM_001128213, exon 1 of 11)	128	NM_001330278	151525		NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
205227	chr7	7977921	7978250	+	0	NA	intron (NM_138426, intron 1 of 7)	intron (NM_138426, intron 1 of 7)	9289	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
167763	chr3	132642121	132642460	+	0	NA	intron (NM_032169, intron 3 of 19)	intron (NM_032169, intron 3 of 19)	-12156	NM_198329	79876		NM_024818	ENSG00000081307	UBA5	DEE44|EIEE44|SCAR24|THIFP1|UBE1DC1	ubiquitin like modifier activating enzyme 5	protein-coding
222510	chr8	140541921	140542250	+	0	NA	intron (NM_012154, intron 14 of 18)	intron (NM_012154, intron 14 of 18)	30089	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
114952	chr19	13989071	13989980	+	0	NA	intron (NM_002918, intron 2 of 20)	AluSq2|SINE|Alu	16795	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
220496	chr8	100557271	100557950	+	0	NA	intron (NM_001270377, intron 1 of 4)	L2a|LINE|L2	2149	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
175138	chr4	55398971	55399750	+	0	NA	intron (NM_018475, intron 1 of 5)	intron (NM_018475, intron 1 of 5)	3403	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
158092	chr22	49996001	49996200	+	0	NA	3' UTR (NM_001001694, exon 15 of 15)	3' UTR (NM_001001694, exon 15 of 15)	16665	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
118012	chr19	34171521	34173890	+	0	NA	exon (NM_001384427, exon 1 of 9)	exon (NM_001384427, exon 1 of 9)	201	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
205343	chr7	12685351	12685900	+	0	NA	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-1202	NM_212460	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
197583	chr6	79946301	79946760	+	0	NA	intron (NM_022726, intron 1 of 5)	intron (NM_022726, intron 1 of 5)	1023	NM_022726	6785		NM_022726	ENSG00000118402	ELOVL4	ADMD|CT118|ISQMR|SCA34|STGD2|STGD3	ELOVL fatty acid elongase 4	protein-coding
10441	chr1	66248951	66249450	+	0	NA	intron (NM_001037340, intron 2 of 14)	intron (NM_001037340, intron 2 of 14)	-82908	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
166487	chr3	114298071	114298680	+	0	NA	intron (NM_173799, intron 2 of 3)	intron (NM_173799, intron 2 of 3)	4347	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
22114	chr1	211687601	211688350	+	0	NA	TTS (NR_148994)	TTS (NR_148994)	12213	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
205192	chr7	7680001	7680630	+	0	NA	intron (NM_001302350, intron 3 of 4)	L1MA3|LINE|L1	38292	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
63700	chr14	21101021	21101480	+	0	NA	intron (NM_001146683, intron 2 of 7)	intron (NM_001146683, intron 2 of 7)	2313	NM_001146683	643382		NM_001146683	ENSG00000232070	TMEM253	C14orf176|C14orf95|NCRNA00220	transmembrane protein 253	protein-coding
4368	chr1	20719901	20720300	+	0	NA	3' UTR (NM_001103161, exon 10 of 10)	3' UTR (NM_001103161, exon 10 of 10)	-2093	NM_001122819	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
219573	chr8	79615351	79615600	+	0	NA	intron (NM_001199214, intron 1 of 5)	intron (NM_001199214, intron 1 of 5)	4358	NM_007029	11075		NM_007029	ENSG00000104435	STMN2	SCG10|SCGN10	stathmin 2	protein-coding
216770	chr8	22494251	22494350	+	0	NA	intron (NM_005605, intron 3 of 13)	THE1A|LTR|ERVL-MaLR	53222	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
77382	chr15	82849671	82850130	+	0	NA	exon (NM_199330, exon 9 of 9)	exon (NM_199330, exon 9 of 9)	40272	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
239521	chrY	56838451	56839300	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-115380	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
211548	chr7	105447501	105447700	+	0	NA	Intergenic	Intergenic	-58210	NM_001350740	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
170504	chr3	186242271	186242800	+	0	NA	exon (NM_001080745, exon 19 of 24)	exon (NM_001080745, exon 19 of 24)	119699	NM_001080745	1608		NM_001346	ENSG00000058866	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase gamma	protein-coding
72729	chr15	38695201	38695600	+	0	NA	Intergenic	Intergenic	-1198	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
25423	chr10	6567971	6568130	+	0	NA	intron (NM_001323265, intron 1 of 17)	AluSz|SINE|Alu	12226	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
16134	chr1	153662301	153662900	+	0	NA	TTS (NR_052019)	TTS (NR_052019)	3897	NM_012437	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
205049	chr7	6576471	6578530	+	0	NA	promoter-TSS (NM_001134388)	promoter-TSS (NM_001134388)	46	NR_163913	55146		NM_018106	ENSG00000136247	ZDHHC4	ZNF374	zinc finger DHHC-type palmitoyltransferase 4	protein-coding
177067	chr4	108043721	108043980	+	0	NA	Intergenic	Intergenic	39186	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
135047	chr2	156339621	156339880	+	0	NA	non-coding (NR_147695, exon 1 of 1)	non-coding (NR_147695, exon 1 of 1)	2370	NR_147695	440918		NR_147695		FLJ46875	-	uncharacterized LOC440918	ncRNA
122534	chr19	49634901	49635330	+	0	NA	TTS (NM_006270)	TTS (NM_006270)	5028	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
28406	chr10	47710271	47710430	+	0	NA	non-coding (NR_027634, exon 3 of 7)	non-coding (NR_027634, exon 3 of 7)	4289	NR_160660	439965		NR_027634		SHLD2P3	FAM35B2|FAM35DP	shieldin complex subunit 2 pseudogene 3	pseudo
42804	chr11	72810921	72811380	+	0	NA	Intergenic	AluSx|SINE|Alu	-3261	NM_033388	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
77518	chr15	84694801	84695000	+	0	NA	intron (NM_001271920, intron 1 of 6)	AluSg|SINE|Alu	21239	NM_014300	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
12027	chr1	97377151	97377650	+	0	NA	intron (NM_000110, intron 15 of 22)	(TATC)n|Simple_repeat|Simple_repeat	281477	NR_046590	100873932		NR_046590	ENSG00000232878	DPYD-AS1	-	DPYD antisense RNA 1	ncRNA
90415	chr17	1340501	1340700	+	0	NA	Intergenic	AluJb|SINE|Alu	59622	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
25375	chr10	6473101	6474250	+	0	NA	intron (NM_001282644, intron 12 of 17)	intron (NM_001282644, intron 12 of 17)	106601	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
220468	chr8	100430401	100431600	+	0	NA	Intergenic	Intergenic	48237	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
49282	chr12	19700921	19701180	+	0	NA	Intergenic	L1PA15|LINE|L1	260451	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
121866	chr19	48272451	48272550	+	0	NA	intron (NM_153608, intron 3 of 5)	AluSx1|SINE|Alu	1213	NM_001369812	163071		NM_153608	ENSG00000178150	ZNF114	-	zinc finger protein 114	protein-coding
235244	chrX	41472651	41472750	+	0	NA	intron (NM_001378477, intron 2 of 2)	intron (NM_001378477, intron 2 of 2)	25240	NM_022567	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
123657	chr19	54804401	54804800	+	0	NA	intron (NM_001080770, intron 2 of 6).30	intron (NM_001080770, intron 2 of 6).30	990	NM_001080770	3805		NM_002255	ENSG00000189013	KIR2DL4	CD158D|G9P|KIR-103AS|KIR-2DL4|KIR103|KIR103AS	killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 4	protein-coding
191335	chr6	7110421	7111050	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	2774	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
115826	chr19	16487151	16487650	+	0	NA	intron (NM_145046, intron 3 of 8)	AluSq2|SINE|Alu	8767	NM_145046	125972		NM_145046	ENSG00000269058	CALR3	CMH19|CRT2|CT93	calreticulin 3	protein-coding
237936	chrX	132292801	132293030	+	0	NA	intron (NR_110410, intron 2 of 2)	intron (NR_110410, intron 2 of 2)	-73435	NM_001271187	57826		NM_021183	ENSG00000123728	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
56889	chr12	120313451	120314730	+	0	NA	TTS (NM_001385733)	TTS (NM_001385733)	11769	NM_012240	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
24163	chr1	235869551	235869850	+	0	NA	intron (NM_001301365, intron 1 of 52)	L2a|LINE|L2	-2794	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
57523	chr12	122133621	122134080	+	0	NA	exon (NM_014938, exon 9 of 17)	exon (NM_014938, exon 9 of 17)	-33869	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
171706	chr3	197846051	197846450	+	0	NA	intron (NM_001365715, intron 10 of 20)	AluJb|SINE|Alu	54996	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
186182	chr5	134209421	134209930	+	0	NA	intron (NM_002715, intron 1 of 6)	AluSz6|SINE|Alu	15879	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
213569	chr7	139337051	139337150	+	0	NA	Intergenic	AluSz|SINE|Alu	-3259	NM_001244585	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
99450	chr17	50137851	50138500	+	0	NA	intron (NM_032595, intron 7 of 9)	(GT)n|Simple_repeat|Simple_repeat	-8015	NM_174920	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
142841	chr20	17569361	17571700	+	0	NA	intron (NM_006870, intron 1 of 3)	CpG	455	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
164139	chr3	56752471	56752630	+	0	NA	intron (NM_001289698, intron 5 of 10)	intron (NM_001289698, intron 5 of 10)	23167	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
152840	chr22	21980071	21980750	+	0	NA	intron (NM_001349847, intron 1 of 18)	intron (NM_001349847, intron 1 of 18)	2377	NM_001349847	8940		NM_003935	ENSG00000100038	TOP3B	TOP3B1	DNA topoisomerase III beta	protein-coding
62645	chr13	101623471	101623850	+	0	NA	intron (NM_004791, intron 7 of 10)	intron (NM_004791, intron 7 of 10)	133708	NM_001271756	9358		NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
225435	chr9	35078201	35078600	+	0	NA	intron (NM_004629, intron 3 of 13)	intron (NM_004629, intron 3 of 13)	1542	NM_004629	2189		NM_004629	ENSG00000221829	FANCG	FAG|XRCC9	FA complementation group G	protein-coding
224033	chr9	3478501	3478980	+	0	NA	intron (NM_001282116, intron 1 of 16)	L1M4|LINE|L1	10694	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
123907	chr19	55345421	55346500	+	0	NA	intron (NM_032701, intron 6 of 8)	intron (NM_032701, intron 6 of 8)	6084	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
98402	chr17	46579101	46580700	+	0	NA	promoter-TSS (NM_001288812)	promoter-TSS (NM_001288812)	-178	NM_001288811	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
152375	chr22	20512351	20513230	+	0	NA	intron (NM_001293237, intron 1 of 16)	AluSg|SINE|Alu	4743	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
172169	chr4	1225651	1226200	+	0	NA	intron (NM_001377193, intron 4 of 9)	CpG-20806	15805	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
17864	chr1	159936051	159937080	+	0	NA	intron (NM_001135050, intron 5 of 20)	intron (NM_001135050, intron 5 of 20)	9048	NM_001135050	57549		NM_020789	ENSG00000085552	IGSF9	FP18798|IGSF9A|Nrt1	immunoglobulin superfamily member 9	protein-coding
94854	chr17	31503951	31504400	+	0	NA	intron (NM_001346748, intron 1 of 12)	AluY|SINE|Alu	16067	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
66924	chr14	65419451	65419750	+	0	NA	intron (NM_001371533, intron 1 of 10)	intron (NM_001371533, intron 1 of 10)	6870	NM_001371533	2530		NM_004480	ENSG00000033170	FUT8	CDGF|CDGF1	fucosyltransferase 8	protein-coding
113186	chr19	8409771	8410150	+	0	NA	Intergenic	AluYf1|SINE|Alu	-3343	NM_001005415	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
150073	chr21	37400801	37401950	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	-17530	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
105942	chr18	3602121	3603980	+	0	NA	promoter-TSS (NR_119377)	promoter-TSS (NR_119377)	-687	NR_119377	84777		NM_032691		DLGAP1-AS2	DLPAP1-AS2	DLGAP1 antisense RNA 2	ncRNA
92078	chr17	7526121	7526480	+	0	NA	Intergenic	AluSp|SINE|Alu	-22758	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
213680	chr7	140069571	140069930	+	0	NA	Intergenic	MER74A|LTR|ERVL	-6799	NR_130117	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
43069	chr11	74590551	74590980	+	0	NA	Intergenic	AluJb|SINE|Alu	-1817	NR_046409	10714		NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
214353	chr7	149554551	149555050	+	0	NA	intron (NR_027789, intron 4 of 8)	SVA_D|Retroposon|SVA	-56991	NM_152557	155061		NM_152557	ENSG00000181220	ZNF746	PARIS	zinc finger protein 746	protein-coding
51057	chr12	49824121	49824580	+	0	NA	intron (NM_001368048, intron 1 of 13)	intron (NM_001368048, intron 1 of 13)	4063	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
40649	chr11	64732651	64732830	+	0	NA	intron (NM_001098670, intron 12 of 16)	AluYc|SINE|Alu	-9543	NM_001376267	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
60758	chr13	44917401	44918980	+	0	NA	Intergenic	L2|LINE|L2	71281	NM_012345	26747		NM_012345	ENSG00000083635	NUFIP1	NUFIP|Rsa1|bA540M5.1	nuclear FMR1 interacting protein 1	protein-coding
38300	chr11	43580921	43581500	+	0	NA	promoter-TSS (NR_029697)	promoter-TSS (NR_029697)	-184	NR_029697	406918		NR_029697	ENSG00000199077	MIR129-2	MIR-129b|MIRN129-2|mir-129-2	microRNA 129-2	ncRNA
61056	chr13	48250371	48251180	+	0	NA	intron (NM_021999, intron 1 of 5)	intron (NM_021999, intron 1 of 5)	17569	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
82561	chr16	18571271	18571430	+	0	NA	intron (NR_003569, intron 1 of 9)	intron (NR_003569, intron 1 of 9)	102	NR_003569	653190		NR_003569	ENSG00000291057	ABCC6P1	-	ATP binding cassette subfamily C member 6 pseudogene 1	pseudo
198536	chr6	106545851	106546500	+	0	NA	intron (NM_001371242, intron 13 of 21)	MLT1K|LTR|ERVL-MaLR	34320	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
177106	chr4	108084951	108085050	+	0	NA	intron (NM_016269, intron 4 of 11)	intron (NM_016269, intron 4 of 11)	80336	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
133865	chr2	128372501	128373300	+	0	NA	Intergenic	Intergenic	-54032	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
184999	chr5	115169401	115170880	+	0	NA	promoter-TSS (NM_001300759)	promoter-TSS (NM_001300759)	-232	NM_001300759	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
115044	chr19	14133471	14133630	+	0	NA	intron (NM_018154, intron 1 of 3)	AluSq2|SINE|Alu	3039	NM_018154	55723		NM_018154	ENSG00000105011	ASF1B	CIA-II	anti-silencing function 1B histone chaperone	protein-coding
90388	chr17	1286171	1287150	+	0	NA	intron (NM_172367, intron 1 of 2)	intron (NM_172367, intron 1 of 2)	6998	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
131312	chr2	96119871	96120630	+	0	NA	Intergenic	L2b|LINE|L2	-3679	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
198811	chr6	109026851	109026950	+	0	NA	intron (NM_014454, intron 1 of 9)	AluSz6|SINE|Alu	-17345	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
76879	chr15	77978201	77978400	+	0	NA	Intergenic	Intergenic	15925	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
17204	chr1	156257501	156258080	+	0	NA	intron (NM_001323614, intron 15 of 20)	intron (NM_001323614, intron 15 of 20)	-9673	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
28133	chr10	43436001	43437800	+	0	NA	promoter-TSS (NM_001355445)	promoter-TSS (NM_001355445)	52	NM_001355449	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
90512	chr17	1465251	1465900	+	0	NA	3' UTR (NM_001080950, exon 32 of 32)	3' UTR (NM_001080950, exon 32 of 32)	-9343	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
62144	chr13	95796321	95796400	+	0	NA	Intergenic	Intergenic	119221	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
191881	chr6	15323171	15323330	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	74395	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
99251	chr17	49712301	49712700	+	0	NA	intron (NM_030802, intron 7 of 7)	intron (NM_030802, intron 7 of 7)	-4536	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
83277	chr16	24015321	24015600	+	0	NA	intron (NM_212535, intron 3 of 16)	intron (NM_212535, intron 3 of 16)	179477	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
138382	chr2	204027051	204027500	+	0	NA	Intergenic	Intergenic	90512	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123582	chr19	54460251	54461280	+	0	NA	TTS (NM_001301782).3	TTS (NM_001301782).3	3013	NM_198988	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
39352	chr11	59552901	59553630	+	0	NA	Intergenic	Intergenic	38352	NM_001004711	390199		NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
176790	chr4	102512271	102512650	+	0	NA	intron (NM_001382625, intron 2 of 24)	AluJr|SINE|Alu	-9974	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
208930	chr7	74086221	74087080	+	0	NA	intron (NM_002314, intron 2 of 15)	AluJb|SINE|Alu	2846	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
179593	chr4	185404151	185404450	+	0	NA	intron (NR_144317, intron 10 of 11)	AluSc8|SINE|Alu	-7013	NM_001377443	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
194065	chr6	31865551	31866450	+	0	NA	exon (NM_001178044, exon 13 of 20).3	exon (NM_001178044, exon 13 of 20).3	-3179	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
57901	chr12	123455521	123455780	+	0	NA	Intergenic	L1MC3|LINE|L1	-2489	NR_104103	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
195463	chr6	37025771	37026330	+	0	NA	intron (NM_173558, intron 14 of 15)	intron (NM_173558, intron 14 of 15)	20395	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
209220	chr7	75525751	75526050	+	0	NA	intron (NR_028059, intron 2 of 8)	intron (NR_028059, intron 2 of 8)	2223	NR_028059	5387		NM_005395	ENSG00000291092	PMS2P3	PMS2L3|PMS2L9|PMS5|PMSR3	PMS1 homolog 2, mismatch repair system component pseudogene 3	pseudo
82292	chr16	15594871	15595230	+	0	NA	3' UTR (NM_014647, exon 27 of 27)	3' UTR (NM_014647, exon 27 of 27)	16045	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
114856	chr19	13854351	13854950	+	0	NA	Intergenic	AluJo|SINE|Alu	-7386	NR_146095	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
216558	chr8	21904871	21905350	+	0	NA	Intergenic	Intergenic	8580	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
133951	chr2	130573371	130573730	+	0	NA	intron (NR_027314, intron 1 of 1)	intron (NR_027314, intron 1 of 1)	2701	NR_027314	150527		NR_027313	ENSG00000290614	PRSS40A	TISP43	serine protease 40A (pseudogene)	pseudo
197231	chr6	69232871	69233030	+	0	NA	intron (NM_001704, intron 17 of 31)	intron (NM_001704, intron 17 of 31)	563516	NM_001363722	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
57372	chr12	121796421	121796680	+	0	NA	intron (NR_152738, intron 4 of 4)	intron (NR_152738, intron 4 of 4)	-2862	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
215323	chr7	157351951	157352050	+	0	NA	intron (NM_001363676, intron 1 of 6)	(AAAC)n|Simple_repeat|Simple_repeat	14996	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
16635	chr1	155124571	155124730	+	0	NA	Intergenic	Intergenic	-3226	NM_182685	1942		NM_004428	ENSG00000169242	EFNA1	B61|ECKLG|EFL1|EPLG1|GMAN|LERK-1|LERK1|TNFAIP4	ephrin A1	protein-coding
103564	chr17	78677351	78678930	+	0	NA	intron (NM_001365037, intron 12 of 13)	intron (NM_001365037, intron 12 of 13)	38892	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
20516	chr1	198673651	198674150	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	34860	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
221363	chr8	123330071	123330230	+	0	NA	intron (NM_014109, intron 24 of 27)	AluJo|SINE|Alu	-17884	NR_037516	100500863		NR_037516	ENSG00000207704	MIR548AA1	-	microRNA 548aa-1	ncRNA
215247	chr7	156925651	156925750	+	0	NA	Intergenic	Intergenic	-24012	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
176461	chr4	89305571	89306000	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	2015	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
133601	chr2	121754801	121756300	+	0	NA	promoter-TSS (NM_004622)	promoter-TSS (NM_004622)	5	NM_001261401	7247		NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
235371	chrX	44899871	44900030	+	0	NA	intron (NM_001291416, intron 2 of 28)	intron (NM_001291416, intron 2 of 28)	26762	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
42264	chr11	68209201	68210200	+	0	NA	intron (NR_161378, intron 1 of 9)	MIRc|SINE|MIR	3596	NM_001369426	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
43970	chr11	93775001	93775580	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-8992	NM_004268	9440		NM_004268	ENSG00000042429	MED17	CRSP6|CRSP77|DRIP80|SRB4|TRAP80	mediator complex subunit 17	protein-coding
170289	chr3	184324201	184324400	+	0	NA	exon (NM_001194946, exon 18 of 34)	exon (NM_001194946, exon 18 of 34)	-1396	NR_003055	692107		NR_003055	ENSG00000212158	SNORD66	HBII-142	small nucleolar RNA, C/D box 66	snoRNA
98505	chr17	47487521	47487780	+	0	NA	intron (NR_033934, intron 3 of 5)	AluY|SINE|Alu	4970	NR_033934	653479		NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
97597	chr17	44114401	44114800	+	0	NA	intron (NM_001015053, intron 2 of 26)	intron (NM_001015053, intron 2 of 26)	-1312	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
201528	chr6	149138971	149139130	+	0	NA	Intergenic	MIR|SINE|MIR	-78874	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
231282	chr9	130025051	130025650	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	17839	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
139040	chr2	218572201	218572600	+	0	NA	intron (NR_073390, intron 1 of 6)	Tigger12A|DNA|TcMar-Tigger	3561	NR_073390	9125		NM_005444	ENSG00000144580	CNOT9	CAF40|CT129|RCD-1|RCD1|RQCD1	CCR4-NOT transcription complex subunit 9	protein-coding
235658	chrX	48533221	48533480	+	0	NA	Intergenic	(TCAC)n|Simple_repeat|Simple_repeat	-6269	NM_001348262	4943		NM_002536	ENSG00000068354	TBC1D25	MG81|OATL1	TBC1 domain family member 25	protein-coding
18823	chr1	167658651	167659000	+	0	NA	intron (NM_001322923, intron 1 of 5)	L1ME3G|LINE|L1	28593	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
231913	chr9	133100001	133100350	+	0	NA	intron (NM_001271775, intron 17 of 17)	intron (NM_001271775, intron 17 of 17)	17636	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
10240	chr1	63441651	63441950	+	0	NA	intron (NM_001347145, intron 7 of 7)	intron (NM_001347145, intron 7 of 7)	74173	NM_013339	29929		NM_013339	ENSG00000088035	ALG6	CDG1C	ALG6 alpha-1,3-glucosyltransferase	protein-coding
108914	chr18	79438871	79440130	+	0	NA	intron (NM_172389, intron 3 of 9)	intron (NM_172389, intron 3 of 9)	39201	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
104054	chr17	80144951	80145700	+	0	NA	intron (NM_014740, intron 1 of 11)	AluSz6|SINE|Alu	1803	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
18992	chr1	169367221	169368620	+	0	NA	promoter-TSS (NM_003666)	promoter-TSS (NM_003666)	41	NM_001320972	8548		NM_003666	ENSG00000117475	BLZF1	GOLGIN-45|JEM-1|JEM-1s|JEM1	basic leucine zipper nuclear factor 1	protein-coding
224500	chr9	18844651	18844750	+	0	NA	intron (NM_001040272, intron 23 of 28)	L1PA3|LINE|L1	188509	NM_001287050	158297		NM_153707	ENSG00000155875	SAXO1	C9orf138|FAM154A	stabilizer of axonemal microtubules 1	protein-coding
189828	chr5	177084301	177084880	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-2325	NM_001354984	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
15806	chr1	151289071	151290600	+	0	NA	exon (NM_001304764, exon 6 of 9)	exon (NM_001304764, exon 6 of 9)	7536	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
70107	chr14	100235801	100236900	+	0	NA	Intergenic	Intergenic	-2794	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
167081	chr3	127046851	127046950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	58306	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
58564	chr12	132414821	132415950	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-74766	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
37678	chr11	27485921	27486580	+	0	NA	Intergenic	Intergenic	-13460	NM_018490	55366		NM_018490	ENSG00000205213	LGR4	BNMD17|DPSL|GPR48	leucine rich repeat containing G protein-coupled receptor 4	protein-coding
73012	chr15	40746471	40747080	+	0	NA	intron (NM_018145, intron 4 of 12)	intron (NM_018145, intron 4 of 12)	8479	NM_018145	55177		NM_018145	ENSG00000137824	RMDN3	FAM82A2|FAM82C|RMD-3|RMD3|ptpip51	regulator of microtubule dynamics 3	protein-coding
238212	chrX	139743071	139743230	+	0	NA	intron (NM_173694, intron 26 of 29)	intron (NM_173694, intron 26 of 29)	-34928	NM_001099855	4168		NM_005369	ENSG00000101977	MCF2	ARHGEF21|DBL	MCF.2 cell line derived transforming sequence	protein-coding
22774	chr1	224413801	224414250	+	0	NA	intron (NM_001115113, intron 6 of 13)	AluSx|SINE|Alu	-15714	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
161163	chr3	39100271	39100430	+	0	NA	exon (NM_001278790, exon 3 of 6)	exon (NM_001278790, exon 3 of 6)	7277	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
235908	chrX	53075051	53076550	+	0	NA	intron (NM_018969, intron 1 of 1)	MER112|DNA|hAT-Charlie	-6567	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
101984	chr17	74756401	74756600	+	0	NA	intron (NM_004252, intron 1 of 5)	AluSx|SINE|Alu	7872	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
193555	chr6	30619701	30620100	+	0	NA	intron (NM_014046, intron 3 of 6).5	intron (NM_014046, intron 3 of 6).5	2060	NM_014046	28973		NM_014046	ENSG00000204568	MRPS18B	C6orf14|HSPC183|HumanS18a|MRP-S18-2|MRPS18-2|PTD017|S18amt|mS40	mitochondrial ribosomal protein S18B	protein-coding
221069	chr8	116877321	116877780	+	0	NA	TTS (NR_033886)	TTS (NR_033886)	-2750	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
23580	chr1	229542301	229542700	+	0	NA	intron (NM_012089, intron 3 of 12)	intron (NM_012089, intron 3 of 12)	16207	NM_012089	23456		NM_012089	ENSG00000135776	ABCB10	EST20237|M-ABC2|MTABC2	ATP binding cassette subfamily B member 10	protein-coding
183291	chr5	76546201	76546790	+	0	NA	promoter-TSS (NM_001285460)	promoter-TSS (NM_001285460)	-914	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
172285	chr4	1556271	1556830	+	0	NA	Intergenic	Intergenic	127441	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
112612	chr19	6743171	6743900	+	0	NA	exon (NM_004240, exon 6 of 14)	exon (NM_004240, exon 6 of 14)	3855	NM_001288963	9322		NM_004240	ENSG00000125733	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
238983	chrX	155632371	155632900	+	0	NA	intron (NM_001304990, intron 1 of 2)	MLT1H|LTR|ERVL-MaLR	-19683	NM_018196	55217		NM_018196	ENSG00000185973	TMLHE	AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130	trimethyllysine hydroxylase, epsilon	protein-coding
152692	chr22	21626451	21626750	+	0	NA	Intergenic	Intergenic	3422	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
215029	chr7	152421051	152421430	+	0	NA	intron (NM_170606, intron 1 of 58)	L1PA15|LINE|L1	14763	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
22615	chr1	223447451	223447600	+	0	NA	Intergenic	L1PA3|LINE|L1	54110	NM_152610	164127		NM_152610	ENSG00000178395	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
184124	chr5	94580771	94581080	+	0	NA	intron (NM_001385723, intron 1 of 4)	intron (NM_001385723, intron 1 of 4)	37200	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
44213	chr11	96310371	96310530	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-30988	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
86459	chr16	66936571	66937680	+	0	NA	intron (NM_001365406, intron 1 of 11)	AluJr|SINE|Alu	1609	NM_198061	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
59658	chr13	28496401	28496800	+	0	NA	Intergenic	Intergenic	-1472	NM_001160030	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
50547	chr12	47978601	47979000	+	0	NA	intron (NM_033150, intron 40 of 52)	intron (NM_033150, intron 40 of 52)	15204	NM_001143842	79022		NM_024056	ENSG00000134291	TMEM106C	-	transmembrane protein 106C	protein-coding
56676	chr12	120003751	120004800	+	0	NA	intron (NR_147894, intron 3 of 8)	intron (NR_147894, intron 3 of 8)	14431	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
103105	chr17	77354001	77354580	+	0	NA	intron (NM_006640, intron 1 of 10)	MIR|SINE|MIR	-19047	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
105846	chr18	3009871	3010230	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	1897	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
65595	chr14	52148551	52148650	+	0	NA	Intergenic	AluYj4|SINE|Alu	-79541	NM_007361	22795		NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
187918	chr5	148850971	148851380	+	0	NA	Intergenic	Intergenic	24564	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
47732	chr12	6472321	6472680	+	0	NA	Intergenic	Intergenic	-1823	NM_014231	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
157647	chr22	46122271	46123180	+	0	NA	Intergenic	CpG	9039	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
202553	chr6	158652751	158656380	+	0	NA	intron (NM_001242395, intron 2 of 15)	intron (NM_001242395, intron 2 of 15)	4551	NM_001242394	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
18781	chr1	167519801	167520230	+	0	NA	Intergenic	Intergenic	-1486	NM_198053	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
128263	chr2	54577051	54577350	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	18806	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
37367	chr11	16607321	16607780	+	0	NA	intron (NM_001367872, intron 3 of 16)	CpG	130927	NM_001367872	55553		NM_017508	ENSG00000110693	SOX6	HSSOX6|SOXD|TOLCAS	SRY-box transcription factor 6	protein-coding
35047	chr11	587671	588580	+	0	NA	intron (NM_001286582, intron 4 of 17)	intron (NM_001286582, intron 4 of 17)	11655	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
121962	chr19	48478751	48479350	+	0	NA	intron (NM_017457, intron 11 of 11)	MSR1|Satellite|Satellite	9681	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
203737	chr7	1147621	1148080	+	0	NA	TTS (NM_001365383)	TTS (NM_001365383)	-9593	NM_001134395	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
133739	chr2	127418501	127418700	+	0	NA	intron (NM_001375611, intron 1 of 8)	intron (NM_001375611, intron 1 of 8)	173	NM_001375610	5624		NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C, inactivator of coagulation factors Va and VIIIa	protein-coding
54255	chr12	85036301	85036700	+	0	NA	promoter-TSS (NM_001100917)	promoter-TSS (NM_001100917)	149	NM_001079910	84125		NM_032165	ENSG00000133640	LRRIQ1	-	leucine rich repeats and IQ motif containing 1	protein-coding
237832	chrX	130062021	130062280	+	0	NA	Intergenic	Intergenic	48347	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
9129	chr1	45359801	45360350	+	0	NA	intron (NM_007170, intron 4 of 10)	intron (NM_007170, intron 4 of 10)	-19605	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
159449	chr3	13890051	13890150	+	0	NA	Intergenic	Intergenic	-10029	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
115922	chr19	16617371	16617530	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	10754	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
232446	chr9	136117871	136119600	+	0	NA	promoter-TSS (NM_001256526)	promoter-TSS (NM_001256526)	140	NM_152833	90120		NM_152833	ENSG00000238227	TMEM250	C9orf69	transmembrane protein 250	protein-coding
65560	chr14	51937551	51937850	+	0	NA	intron (NM_053064, intron 2 of 3)	L1HS|LINE|L1	-19129	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
223048	chr8	143373001	143373730	+	0	NA	intron (NM_052924, intron 1 of 14)	CpG	4489	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
163421	chr3	50562901	50563100	+	0	NA	intron (NM_001171743, intron 2 of 4)	intron (NM_001171743, intron 2 of 4)	4747	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
204257	chr7	2624351	2624450	+	0	NA	Intergenic	Intergenic	-7586	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
134259	chr2	135536901	135537100	+	0	NA	intron (NM_001378107, intron 1 of 26)	MER1B|DNA|hAT-Charlie	5516	NM_001378107	23518		NM_015361	ENSG00000048991	R3HDM1	R3HDM	R3H domain containing 1	protein-coding
167200	chr3	128316321	128317200	+	0	NA	intron (NM_021937, intron 4 of 6)	intron (NM_021937, intron 4 of 6)	-146834	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
92436	chr17	8443371	8444030	+	0	NA	intron (NM_001025579, intron 1 of 9)	intron (NM_001025579, intron 1 of 9)	7816	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
207753	chr7	48154801	48155000	+	0	NA	Intergenic	L1MEf|LINE|L1	-16558	NM_152701	154664		NM_152555	ENSG00000179869	ABCA13	-	ATP binding cassette subfamily A member 13	protein-coding
176338	chr4	88244571	88245400	+	0	NA	Intergenic	LTR2752|LTR|ERV1	-13359	NM_001257386	9429		NM_004827	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|CDw388|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1	ATP binding cassette subfamily G member 2 (JR blood group)	protein-coding
141644	chr2	241731001	241731200	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-3530	NM_001287249	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
229093	chr9	114375071	114375230	+	0	NA	intron (NM_001317952, intron 2 of 20)	L1MC5|LINE|L1	12832	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
184670	chr5	107990951	107991650	+	0	NA	intron (NM_001163315, intron 7 of 8)	intron (NM_001163315, intron 7 of 8)	-320363	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
130251	chr2	84850571	84850730	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	30434	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
169199	chr3	156813051	156813680	+	0	NA	intron (NR_038387, intron 1 of 2)	MER91A|DNA|hAT-Tip100	-1344	NR_003284	647033		NR_003284		PA2G4P4	PA2G4L1	proliferation-associated 2G4 pseudogene 4	pseudo
13523	chr1	114777701	114777900	+	0	NA	intron (NM_025073, intron 3 of 4)	intron (NM_025073, intron 3 of 4)	2885	NR_049742	80143		NM_025073	ENSG00000052723	SIKE1	SIKE	suppressor of IKBKE 1	protein-coding
46084	chr11	122835001	122835530	+	0	NA	Intergenic	MIRb|SINE|MIR	-3235	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
230562	chr9	128469601	128469800	+	0	NA	intron (NM_001351578, intron 5 of 20)	intron (NM_001351578, intron 5 of 20)	12793	NM_153437	4957		NM_002540	ENSG00000136811	ODF2	CT134|ODF2/1|ODF2/2|ODF84	outer dense fiber of sperm tails 2	protein-coding
206143	chr7	27784471	27784850	+	0	NA	intron (NM_006024, intron 5 of 16)	intron (NM_006024, intron 5 of 16)	44565	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
100778	chr17	64001171	64001550	+	0	NA	intron (NM_001164257, intron 4 of 5)	intron (NM_001164257, intron 4 of 5)	-1461	NR_126169	400612		NR_126169	ENSG00000264954	PRR29-AS1	-	PRR29 antisense RNA 1	ncRNA
191014	chr6	3089301	3089500	+	0	NA	intron (NM_001354931, intron 5 of 9)	intron (NM_001354931, intron 5 of 9)	20906	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
217228	chr8	26572151	26572250	+	0	NA	intron (NM_001197293, intron 1 of 13)	intron (NM_001197293, intron 1 of 13)	-5745	NM_001386	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
220885	chr8	104325501	104325700	+	0	NA	Intergenic	Intergenic	-14196	NM_001257317	81501		NM_030788	ENSG00000164935	DCSTAMP	FIND|TM7SF4|hDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding
79897	chr16	1599321	1599780	+	0	NA	intron (NM_014714, intron 4 of 30)	SVA_F|Retroposon|SVA	12522	NM_014714	9742		NM_014714	ENSG00000187535	IFT140	MZSDS|RP80|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114	intraflagellar transport 140	protein-coding
49596	chr12	27243721	27245030	+	0	NA	promoter-TSS (NM_015000)	promoter-TSS (NM_015000)	89	NM_015000	23012		NM_015000	ENSG00000211455	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
37169	chr11	13938671	13939330	+	0	NA	Intergenic	L1PA5|LINE|L1	-14137	NR_135052	101928132		NR_135052	ENSG00000254438	LINC02683	-	long intergenic non-protein coding RNA 2683	ncRNA
54614	chr12	92569871	92570580	+	0	NA	Intergenic	Intergenic	103546	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
112966	chr19	7852271	7852430	+	0	NA	intron (NM_145245, intron 8 of 18)	intron (NM_145245, intron 8 of 18)	22040	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
53864	chr12	70240551	70241100	+	0	NA	intron (NR_120461, intron 3 of 4)	L2a|LINE|L2	-2205	NM_001199302	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
173989	chr4	26288371	26288630	+	0	NA	intron (NM_001374401, intron 1 of 11)	MLT1F|LTR|ERVL-MaLR	-31246	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
147675	chr20	62304671	62305300	+	0	NA	intron (NM_175573, intron 3 of 9)	L1MC4a|LINE|L1	1988	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
198084	chr6	90269051	90269550	+	0	NA	intron (NM_021813, intron 2 of 8)	intron (NM_021813, intron 2 of 8)	27543	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
96030	chr17	39402301	39403930	+	0	NA	promoter-TSS (NM_001370209)	promoter-TSS (NM_001370209)	-559	NM_001370209	84961		NM_032875	ENSG00000108306	FBXL20	Fbl2|Fbl20	F-box and leucine rich repeat protein 20	protein-coding
169042	chr3	153091001	153091230	+	0	NA	Intergenic	Intergenic	-71111	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
186354	chr5	134847901	134848350	+	0	NA	intron (NM_001135586, intron 1 of 1)	AluYm1|SINE|Alu	2157	NM_001300894	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
19644	chr1	180229621	180230200	+	0	NA	promoter-TSS (NM_033343)	promoter-TSS (NM_033343)	-354	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
29737	chr10	72109171	72110250	+	0	NA	intron (NM_001369102, intron 10 of 11)	intron (NM_001369102, intron 10 of 11)	-20678	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
47474	chr12	3903671	3904030	+	0	NA	Intergenic	AluYc|SINE|Alu	-30402	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
54775	chr12	94158001	94158200	+	0	NA	intron (NM_005761, intron 1 of 30)	intron (NM_005761, intron 1 of 30)	9523	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
28880	chr10	62749351	62749730	+	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	-55180	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
22432	chr1	220253451	220253550	+	0	NA	intron (NM_012414, intron 1 of 34)	intron (NM_012414, intron 1 of 34)	14215	NR_001587	6791		NR_001587		AURKAP1	AURKAPS1|AurAps1|STK6P	aurora kinase A pseudogene 1	pseudo
181271	chr5	39267321	39267580	+	0	NA	intron (NM_001243093, intron 1 of 18)	MIRb|SINE|MIR	3199	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
137202	chr2	191173221	191173480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21754	NM_001243835	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
141743	chr2	241883301	241883700	+	0	NA	intron (NR_110220, intron 2 of 3)	AluY|SINE|Alu	2137	NR_110220	101927289		NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
230475	chr9	128217771	128217930	+	0	NA	intron (NM_001374269, intron 1 of 21)	intron (NM_001374269, intron 1 of 21)	-13628	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
207654	chr7	45079101	45079300	+	0	NA	Intergenic	Intergenic	9769	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
70309	chr14	101815871	101816550	+	0	NA	intron (NM_178587, intron 1 of 11)	intron (NM_178587, intron 1 of 11)	6347	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
25929	chr10	11332651	11333150	+	0	NA	3' UTR (NM_001326324, exon 15 of 15)	3' UTR (NM_001326324, exon 15 of 15)	11774	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
228180	chr9	97501301	97502530	+	0	NA	intron (NM_003275, intron 1 of 9)	CpG	249	NM_003275	7111		NM_003275	ENSG00000136842	TMOD1	D9S57E|ETMOD|TMOD	tropomodulin 1	protein-coding
21921	chr1	207839771	207839930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17147	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
149778	chr21	34886101	34887100	+	0	NA	intron (NM_001754, intron 4 of 8)	intron (NM_001754, intron 4 of 8)	2099	NM_001122607	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
497	chr1	1180421	1181280	+	0	NA	exon (NM_153254, exon 4 of 9)	exon (NM_153254, exon 4 of 9)	1169	NM_153254	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
166435	chr3	113838501	113839250	+	0	NA	promoter-TSS (NM_017577)	promoter-TSS (NM_017577)	87	NM_017577	54762		NM_017577	ENSG00000178075	GRAMD1C	-	GRAM domain containing 1C	protein-coding
91634	chr17	5419401	5420930	+	0	NA	promoter-TSS (NM_001320653)	promoter-TSS (NM_001320653)	-426	NM_001320653	4927		NM_002532	ENSG00000108559	NUP88	FADS4	nucleoporin 88	protein-coding
128686	chr2	61519651	61519750	+	0	NA	intron (NM_003400, intron 4 of 24)	AluY|SINE|Alu	18656	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
193632	chr6	30793301	30794380	+	0	NA	Intergenic	Tigger12c|DNA|TcMar-Tigger	27015	NR_138037	105375013		NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20	ncRNA
192061	chr6	16603571	16603730	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	156534	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
36839	chr11	10296471	10297030	+	0	NA	Intergenic	L1MB5|LINE|L1	-2543	NM_030962	81846		NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
52009	chr12	53976951	53977700	+	0	NA	3' UTR (NM_014212, exon 2 of 2)	3' UTR (NM_014212, exon 2 of 2)	-2369	NR_047517	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
139454	chr2	223881701	223882300	+	0	NA	exon (NM_020830, exon 10 of 12)	exon (NM_020830, exon 10 of 12)	-44418	NR_110905	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
120513	chr19	44842421	44842680	+	0	NA	Intergenic	AluY|SINE|Alu	-3747	NM_001042724	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
106993	chr18	32035821	32036100	+	0	NA	intron (NM_017831, intron 1 of 5)	AluSq2|SINE|Alu	17135	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
118157	chr19	35021151	35021450	+	0	NA	intron (NM_001320034, intron 13 of 18)	L2a|LINE|L2	-9170	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
207904	chr7	50467801	50468630	+	0	NA	intron (NM_001082971, intron 12 of 14)	CpG	-17809	NM_001287495	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
121616	chr19	47424501	47424950	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-2492	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
6170	chr1	27425671	27425830	+	0	NA	intron (NM_006990, intron 2 of 8)	AluY|SINE|Alu	33128	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
22254	chr1	212621751	212622480	+	0	NA	Intergenic	Intergenic	-2359	NM_153606	149647		NM_153606	ENSG00000162771	GARIN4	FAM71A|GARI-L4|GARIL4	golgi associated RAB2 interactor family member 4	protein-coding
41680	chr11	66621021	66621580	+	0	NA	intron (NM_001198846, intron 1 of 1)	intron (NM_001198846, intron 1 of 1)	4670	NM_006328	10432		NM_006328	ENSG00000239306	RBM14	COAA|PSP2|SIP|SYTIP1|TMEM137	RNA binding motif protein 14	protein-coding
104440	chr17	81085371	81086180	+	0	NA	intron (NM_001385147, intron 4 of 12)	intron (NM_001385147, intron 4 of 12)	2236	NM_001385156	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
221110	chr8	118089371	118090580	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	21851	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
154244	chr22	31610571	31610730	+	0	NA	intron (NM_001007467, intron 22 of 32)	intron (NM_001007467, intron 22 of 32)	10881	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
33693	chr10	120691321	120691780	+	0	NA	Intergenic	Intergenic	93601	NR_103717	404216		NM_001012711	ENSG00000177234	LINC01561	C10orf85	long intergenic non-protein coding RNA 1561	ncRNA
146248	chr20	48872771	48873130	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-44951	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
232479	chr9	136243751	136243850	+	0	NA	intron (NM_181701, intron 1 of 11)	intron (NM_181701, intron 1 of 11)	2012	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
167814	chr3	133582271	133582430	+	0	NA	intron (NM_001282764, intron 2 of 4)	AluSx|SINE|Alu	7916	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
14736	chr1	145987951	145988250	+	0	NA	Intergenic	FAM|SINE|Alu	7644	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
102477	chr17	75733921	75734330	+	0	NA	intron (NM_001005619, intron 12 of 38)	AluSq2|SINE|Alu	9429	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
55984	chr12	110279221	110279700	+	0	NA	Intergenic	L2a|LINE|L2	-1787	NM_170665	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
187692	chr5	143350751	143351330	+	0	NA	intron (NR_157096, intron 1 of 7)	L2|LINE|L2	52243	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
168380	chr3	141929001	141929400	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	52557	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
174281	chr4	38317601	38318030	+	0	NA	Intergenic	MER41A|LTR|ERV1	-49099	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
212148	chr7	116592371	116592700	+	0	NA	intron (NR_165033, intron 2 of 4)	intron (NR_165033, intron 2 of 4)	22122	NR_120506	100996266		NR_120506		COMETT	COMET|LINC01510	cytosolic oncogenic antisense to MET transcript	ncRNA
159476	chr3	14145701	14146350	+	0	NA	exon (NM_001354727, exon 16 of 16)	exon (NM_001354727, exon 16 of 16)	20973	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
16412	chr1	154478671	154479100	+	0	NA	TTS (NM_001010846)	TTS (NM_001010846)	-23334	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
52663	chr12	56333021	56334880	+	0	NA	promoter-TSS (NM_001127460)	promoter-TSS (NM_001127460)	50	NM_001166279	9924		NM_014871	ENSG00000135473	PAN2	USP52	poly(A) specific ribonuclease subunit PAN2	protein-coding
61128	chr13	48531901	48533830	+	0	NA	intron (NM_001268, intron 1 of 14)	CpG	215	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
145557	chr20	44218451	44218880	+	0	NA	intron (NR_038337, intron 2 of 2)	L1ME4b|LINE|L1	7579	NR_038337	100505783		NR_038337	ENSG00000223891	OSER1-DT	OSER1-AS1	OSER1 divergent transcript	ncRNA
161310	chr3	39403571	39403930	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-2970	NM_002295	3921		NM_002295	ENSG00000168028	RPSA	37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40|uS2	ribosomal protein SA	protein-coding
173548	chr4	10084071	10084230	+	0	NA	intron (NM_017491, intron 9 of 14)	intron (NM_017491, intron 9 of 14)	-5458	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
80184	chr16	2126321	2126650	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-6634	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
121134	chr19	46082271	46082530	+	0	NA	Intergenic	Intergenic	-4771	NR_163177	444882		NM_001002923	ENSG00000204869	IGFL4	-	IGF like family member 4	protein-coding
105879	chr18	3251471	3252300	+	0	NA	promoter-TSS (NM_001303049)	promoter-TSS (NM_001303049)	-328	NM_001303049	10627		NM_006471	ENSG00000101608	MYL12A	HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B	myosin light chain 12A	protein-coding
235877	chrX	51682251	51682550	+	0	NA	exon (NM_001355278, exon 1 of 1)	exon (NM_001355278, exon 1 of 1)	431	NM_001355278	441495		NM_001355278	ENSG00000283093	CENPVL2	CENPVP2	centromere protein V like 2	protein-coding
99948	chr17	57355401	57355800	+	0	NA	intron (NM_170721, intron 4 of 9)	intron (NM_170721, intron 4 of 9)	98581	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
76661	chr15	75684971	75685330	+	0	NA	intron (NM_001897, intron 4 of 9)	intron (NM_001897, intron 4 of 9)	27698	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
155628	chr22	38875301	38875900	+	0	NA	Intergenic	AluSg|SINE|Alu	-3384	NM_014292	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
61821	chr13	75760221	75760750	+	0	NA	promoter-TSS (NM_001366632)	promoter-TSS (NM_001366632)	48	NM_001366632	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
65829	chr14	54892801	54893680	+	0	NA	intron (NM_001024024, intron 1 of 6)	intron (NM_001024024, intron 1 of 6)	9584	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
44335	chr11	102413371	102413930	+	0	NA	intron (NM_052932, intron 2 of 4)	L1PA15|LINE|L1	39115	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
185382	chr5	127892721	127893180	+	0	NA	intron (NM_001317938, intron 6 of 6)	intron (NM_001317938, intron 6 of 6)	189559	NM_001317938	728586		NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
171680	chr3	197738621	197739000	+	0	NA	intron (NM_001145642, intron 1 of 20)	AluJr|SINE|Alu	-1884	NM_001346873	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
169924	chr3	178003851	178004150	+	0	NA	Intergenic	Intergenic	187135	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
225487	chr9	35638171	35639350	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-7510	NR_135130	101926948		NR_135130		LOC101926948	-	uncharacterized LOC101926948	ncRNA
32894	chr10	110161701	110161900	+	0	NA	Intergenic	Intergenic	-9820	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
11938	chr1	93767351	93767450	+	0	NA	intron (NR_148965, intron 1 of 1)	AluJb|SINE|Alu	7983	NR_148965	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
198317	chr6	100846321	100846580	+	0	NA	intron (NM_001284271, intron 4 of 12)	intron (NM_001284271, intron 4 of 12)	34879	NM_006828	10973		NM_006828	ENSG00000112249	ASCC3	ASC1p200|HELIC1|MRT81|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
229399	chr9	121192171	121192330	+	0	NA	intron (NM_016322, intron 2 of 7)	intron (NM_016322, intron 2 of 7)	-9233	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
174000	chr4	26324971	26325550	+	0	NA	intron (NM_001363577, intron 1 of 10)	L2|LINE|L2	4032	NM_001363577	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
168234	chr3	141360851	141361450	+	0	NA	intron (NM_001080412, intron 1 of 7)	intron (NM_001080412, intron 1 of 7)	-6847	NM_001376112	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
77638	chr15	85481451	85482050	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	101147	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
175894	chr4	80075301	80075500	+	0	NA	Intergenic	MER49|LTR|ERV1	-1928	NM_001286780	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
60278	chr13	40618901	40619400	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSx3|SINE|Alu	47491	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
68980	chr14	91459901	91460630	+	0	NA	intron (NR_158976, intron 16 of 16)	AluY|SINE|Alu	-42445	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
213706	chr7	140227121	140227380	+	0	NA	Intergenic	MIR|SINE|MIR	49989	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
191387	chr6	7723071	7723300	+	0	NA	Intergenic	Intergenic	-2914	NM_001718	654		NM_001718	ENSG00000153162	BMP6	IO|VGR|VGR1	bone morphogenetic protein 6	protein-coding
34584	chr10	133246201	133246400	+	0	NA	TTS (NR_108078)	TTS (NR_108078)	1320	NR_030170	574448		NR_030170	ENSG00000284219	MIR202	MIRN202|hsa-mir-202|mir-202	microRNA 202	ncRNA
11289	chr1	89258021	89258480	+	0	NA	TTS (NM_052942)	TTS (NM_052942)	14610	NM_001134486	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
182647	chr5	67163971	67164330	+	0	NA	exon (NM_001290226, exon 27 of 27)	exon (NM_001290226, exon 27 of 27)	32649	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
15281	chr1	149777251	149777350	+	0	NA	Intergenic	LTR56|LTR|ERV1	-5394	NR_166122	2209		NM_000566	ENSG00000150337	FCGR1A	CD64|CD64A|FCG1|FCGR1|FCRI|FcgammaRI|IGFR1	Fc gamma receptor Ia	protein-coding
171569	chr3	196948351	196948650	+	0	NA	exon (NM_025163, exon 3 of 3)	exon (NM_025163, exon 3 of 3)	5826	NM_001355243	152217		NM_138487	ENSG00000270170	NCBP2AS2	HIAR|KRASIM|NCBP2-AS2	NCBP2 antisense 2 (head to head)	protein-coding
152918	chr22	22772501	22772700	+	0	NA	Intergenic	Intergenic	-50176	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
206392	chr7	30770301	30770500	+	0	NA	intron (NR_037598, intron 3 of 19)	MLT1B|LTR|ERVL-MaLR	-1017	NM_032222	84182		NM_032222	ENSG00000106125	MINDY4	AQP-1|AQP1|C7orf67|CHIP28|FAM188B	MINDY lysine 48 deubiquitinase 4	protein-coding
112998	chr19	7900621	7900950	+	0	NA	exon (NM_025061, exon 3 of 3)	exon (NM_025061, exon 3 of 3)	-3092	NM_001297556	5609		NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
222889	chr8	142781771	142781930	+	0	NA	Intergenic	Intergenic	-3978	NM_023946	111188157		NM_023946	ENSG00000284505	LYNX1-SLURP2	-	LYNX1-SLURP2 readthrough	protein-coding
91353	chr17	4506121	4506430	+	0	NA	intron (NM_001124758, intron 1 of 12)	intron (NM_001124758, intron 1 of 12)	7394	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
99771	chr17	51113251	51113630	+	0	NA	intron (NM_001130527, intron 1 of 29)	AluSx1|SINE|Alu	7428	NM_001130527	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
83757	chr16	28706801	28707400	+	0	NA	intron (NM_001199142, intron 1 of 20)	AluSx|SINE|Alu	-4317	NM_001037808	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
178610	chr4	152079421	152080230	+	0	NA	Intergenic	Intergenic	-20928	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
61783	chr13	75296751	75296850	+	0	NA	intron (NM_014832, intron 17 of 20)	intron (NM_014832, intron 17 of 20)	56212	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
93491	chr17	18961771	18961930	+	0	NA	intron (NM_152351, intron 5 of 14)	intron (NM_152351, intron 5 of 14)	9685	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
93805	chr17	20533571	20534130	+	0	NA	Intergenic	Intergenic	-29352	NR_029393	644945		NR_029393	ENSG00000291196	KRT16P3	KERSMCR	keratin 16 pseudogene 3	pseudo
180991	chr5	35810371	35811730	+	0	NA	intron (NM_024867, intron 36 of 36)	intron (NM_024867, intron 36 of 36)	-45841	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
115450	chr19	15333851	15335200	+	0	NA	Intergenic	AluJo|SINE|Alu	-1986	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
100495	chr17	61928971	61929130	+	0	NA	Intergenic	AluSp|SINE|Alu	-1068	NM_001351695	57508		NM_020748	ENSG00000108506	INTS2	INT2|KIAA1287	integrator complex subunit 2	protein-coding
62728	chr13	105366251	105366350	+	0	NA	Intergenic	Intergenic	-99567	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
7816	chr1	36292821	36293080	+	0	NA	intron (NM_001321471, intron 8 of 12)	intron (NM_001321471, intron 8 of 12)	-13418	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
138639	chr2	210445971	210446130	+	0	NA	intron (NR_110605, intron 3 of 5)	L1PA7|LINE|L1	30655	NM_001136574	10314		NM_006055	ENSG00000115365	LANCL1	GPR69A|p40	LanC like glutathione S-transferase 1	protein-coding
223067	chr8	143390751	143391680	+	0	NA	Intergenic	Intergenic	22339	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
233984	chrX	2712571	2712950	+	0	NA	intron (NR_135623, intron 1 of 10)	(AC)n|Simple_repeat|Simple_repeat	21465	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
146139	chr20	48659301	48659680	+	0	NA	intron (NM_020820, intron 16 of 39)	intron (NM_020820, intron 16 of 39)	168509	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
208637	chr7	72996101	72996300	+	0	NA	Intergenic	AluSq2|SINE|Alu	9743	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
14532	chr1	144857421	144857680	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	139379	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
70601	chr14	102786621	102787100	+	0	NA	intron (NM_001199427, intron 1 of 7)	AluJr|SINE|Alu	9381	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
189104	chr5	170327451	170328230	+	0	NA	Intergenic	L2c|LINE|L2	-3553	NR_026945	257358		NM_001025454	ENSG00000235172	LINC01366	-	long intergenic non-protein coding RNA 1366	ncRNA
95334	chr17	35747351	35748050	+	0	NA	intron (NM_139285, intron 4 of 5)	intron (NM_139285, intron 4 of 5)	5539	NM_139285	246176		NM_139285	ENSG00000270765	GAS2L2	CILD41|GAR17	growth arrest specific 2 like 2	protein-coding
67519	chr14	70988151	70988980	+	0	NA	intron (NM_001308160, intron 6 of 33)	intron (NM_001308160, intron 6 of 33)	81106	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
212239	chr7	121369501	121369850	+	0	NA	intron (NM_001040020, intron 5 of 9)	intron (NM_001040020, intron 5 of 9)	26633	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
226624	chr9	73176351	73177800	+	0	NA	Intergenic	Intergenic	25210	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
236973	chrX	101397321	101397580	+	0	NA	TTS (NM_000169)	TTS (NM_000169)	6439	NM_021029	6173		NM_021029	ENSG00000241343	RPL36A	L36A|L44L|MIG6|RPL44|eL42	ribosomal protein L36a	protein-coding
35451	chr11	1456351	1456450	+	0	NA	exon (NM_003957, exon 17 of 20)	exon (NM_003957, exon 17 of 20)	24486	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
31459	chr10	96293301	96293530	+	0	NA	Intergenic	Intergenic	-11019	NM_004088	1791		NM_004088	ENSG00000107447	DNTT	TDT	DNA nucleotidylexotransferase	protein-coding
157668	chr22	46277071	46277930	+	0	NA	intron (NM_017931, intron 5 of 13)	AluSx|SINE|Alu	9492	NM_017931	55020		NM_017931	ENSG00000075234	TTC38	LL22NC03-5H6.5	tetratricopeptide repeat domain 38	protein-coding
103913	chr17	79819821	79820730	+	0	NA	Intergenic	Intergenic	-3177	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
45380	chr11	118310871	118311130	+	0	NA	intron (NM_000733, intron 4 of 8)	intron (NM_000733, intron 4 of 8)	6270	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
37877	chr11	33893271	33894400	+	0	NA	Intergenic	Intergenic	-1759	NM_005574	4005		NM_005574	ENSG00000135363	LMO2	LMO-2|RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
117134	chr19	19275551	19276000	+	0	NA	TTS (NM_172231)	TTS (NM_172231)	-2474	NM_001001524	53345		NM_203510	ENSG00000213996	TM6SF2	-	transmembrane 6 superfamily member 2	protein-coding
160933	chr3	36892871	36894280	+	0	NA	intron (NM_014831, intron 4 of 22)	MER63A|DNA|hAT-Blackjack	51479	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
29571	chr10	71695571	71696080	+	0	NA	intron (NM_001171931, intron 21 of 24)	intron (NM_001171931, intron 21 of 24)	23953	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
103282	chr17	77783151	77783250	+	0	NA	Intergenic	MIRb|SINE|MIR	-54641	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
216921	chr8	22716851	22716950	+	0	NA	intron (NM_001363233, intron 6 of 6)	intron (NM_001363233, intron 6 of 6)	-23420	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
133528	chr2	120226301	120226700	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-3100	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
128328	chr2	54671921	54672180	+	0	NA	TTS (NM_003128)	TTS (NM_003128)	-52962	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
184808	chr5	111241301	111241500	+	0	NA	intron (NM_001744, intron 1 of 10)	L1MD3|LINE|L1	17016	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
159765	chr3	16294901	16295850	+	0	NA	intron (NM_001352980, intron 7 of 9)	intron (NM_001352980, intron 7 of 9)	30163	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
226723	chr9	75186651	75186980	+	0	NA	Intergenic	Intergenic	98301	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
98673	chr17	47846701	47849530	+	0	NA	exon (NM_001258248, exon 2 of 2)	exon (NM_001258248, exon 2 of 2)	3048	NM_001258248	80320		NM_199262	ENSG00000189120	SP6	AI1K|EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
229520	chr9	122595701	122595900	+	0	NA	Intergenic	L1PA3|LINE|L1	-18938	NM_012364	158131		NM_012364	ENSG00000165202	OR1Q1	HSTPCR106|OR1Q2|OR1Q3|OR9-25|OR9-A|OST226|OST226OR9-A|TPCR106	olfactory receptor family 1 subfamily Q member 1	protein-coding
18490	chr1	161643821	161644280	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-12087	NM_000570	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
149495	chr21	32493171	32493650	+	0	NA	intron (NM_058187, intron 4 of 7)	intron (NM_058187, intron 4 of 7)	80704	NR_135467	59271		NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21	eva-1 homolog C	protein-coding
66711	chr14	64338071	64339430	+	0	NA	promoter-TSS (NM_001291723)	promoter-TSS (NM_001291723)	-137	NM_001291712	2100		NM_001437	ENSG00000140009	ESR2	ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8	estrogen receptor 2	protein-coding
215296	chr7	157295451	157295950	+	0	NA	Intergenic	Intergenic	-41304	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
59857	chr13	30576551	30578080	+	0	NA	intron (NM_001370340, intron 1 of 4)	AluJr|SINE|Alu	40272	NM_001370340	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
230798	chr9	129009301	129010180	+	0	NA	intron (NR_163192, intron 8 of 10)	intron (NR_163192, intron 8 of 10)	18591	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
172102	chr4	1057501	1057700	+	0	NA	intron (NM_001366919, intron 10 of 11)	MER58A|DNA|hAT-Charlie	45136	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
169177	chr3	156685601	156686380	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	9326	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
201739	chr6	149920571	149920730	+	0	NA	intron (NM_001001788, intron 1 of 4)	ERV3-16A3_I-int|LTR|ERVL	2471	NM_001001788	353091		NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
8482	chr1	40809321	40810180	+	0	NA	intron (NM_172163, intron 1 of 12)	L2|LINE|L2	25963	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
131737	chr2	98440021	98440280	+	0	NA	Intergenic	L1M4|LINE|L1	-4437	NM_001351424	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
120132	chr19	42205401	42205600	+	0	NA	intron (NR_073046, intron 3 of 4)	AluSp|SINE|Alu	12177	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
213502	chr7	139060651	139061050	+	0	NA	3' UTR (NM_024625, exon 9 of 9)	3' UTR (NM_024625, exon 9 of 9)	-16693	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
62183	chr13	97459321	97459580	+	0	NA	intron (NM_021033, intron 1 of 1)	intron (NM_021033, intron 1 of 1)	25281	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
18465	chr1	161579671	161580190	+	0	NA	Intergenic	Intergenic	-1409	NM_201563	9103		NM_201563		FCGR2C	CD32|CD32C|CDW32|FCG2|FCRIIC|FcgammaRIIc|IGFR2	Fc gamma receptor IIc (gene/pseudogene)	protein-coding
231105	chr9	129808451	129808830	+	0	NA	intron (NM_001317893, intron 3 of 3)	AluSp|SINE|Alu	5456	NM_001317894	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
123264	chr19	53414351	53414550	+	0	NA	intron (NM_001350496, intron 3 of 12)	(CA)n|Simple_repeat|Simple_repeat	-17524	NR_003148	147804		NM_001010856	ENSG00000293185	TPM3P9	-	tropomyosin 3 pseudogene 9	pseudo
229377	chr9	121104821	121105080	+	0	NA	intron (NM_007018, intron 7 of 43)	AluSp|SINE|Alu	-16820	NR_163191	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
215268	chr7	157006501	157006950	+	0	NA	intron (NM_005515, intron 1 of 2)	intron (NM_005515, intron 1 of 2)	418	NR_147077	105375606		NR_147077	ENSG00000235029	MNX1-AS2	-	MNX1 antisense RNA 2	ncRNA
221228	chr8	121639871	121640500	+	0	NA	intron (NR_002835, intron 1 of 3)	intron (NR_002835, intron 1 of 3)	839	NR_002835	594842		NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
11547	chr1	91017751	91018300	+	0	NA	intron (NM_032186, intron 1 of 3)	intron (NM_032186, intron 1 of 3)	3483	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
138701	chr2	213107821	213108280	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	42387	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
204200	chr7	2503271	2504280	+	0	NA	Intergenic	(CCCAGCC)n|Simple_repeat|Simple_repeat	-8754	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
109642	chr19	999901	1000850	+	0	NA	promoter-TSS (NM_138690)	promoter-TSS (NM_138690)	-44	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
167257	chr3	128589121	128589380	+	0	NA	Intergenic	L1MC1|LINE|L1	-13164	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
89764	chr16	89458971	89459330	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	28232	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
144487	chr20	35646201	35646830	+	0	NA	intron (NM_152926, intron 1 of 15)	FLAM_C|SINE|Alu	7394	NM_003915	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
105436	chr17	82892971	82894000	+	0	NA	intron (NM_005993, intron 16 of 38)	intron (NM_005993, intron 16 of 38)	-53463	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
230766	chr9	128906901	128907300	+	0	NA	intron (NM_019594, intron 2 of 3)	intron (NM_019594, intron 2 of 3)	-13882	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
25205	chr10	5703601	5704000	+	0	NA	intron (NM_017782, intron 1 of 20)	AluY|SINE|Alu	18962	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
157940	chr22	49792771	49792930	+	0	NA	intron (NR_146335, intron 8 of 13)	intron (NR_146335, intron 8 of 13)	31481	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
84701	chr16	30806971	30807680	+	0	NA	Intergenic	Intergenic	-20120	NM_001345970	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
232511	chr9	136306171	136307730	+	0	NA	promoter-TSS (NM_001291516)	promoter-TSS (NM_001291516)	-49	NM_001291516	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
203312	chr6	170147521	170148580	+	0	NA	Intergenic	Intergenic	-12592	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
43472	chr11	78187721	78190430	+	0	NA	promoter-TSS (NM_001029859)	promoter-TSS (NM_001029859)	156	NM_020798	57558		NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
147941	chr20	62936951	62939000	+	0	NA	promoter-TSS (NM_017896)	promoter-TSS (NM_017896)	-23	NM_033081	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
159839	chr3	16504221	16504550	+	0	NA	intron (NM_015150, intron 1 of 9)	MER119|DNA|hAT-Charlie	9314	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
136372	chr2	176105271	176105430	+	0	NA	Intergenic	Intergenic	-1930	NM_021192	3237		NM_021192	ENSG00000128713	HOXD11	HOX4|HOX4F	homeobox D11	protein-coding
237442	chrX	119683301	119683700	+	0	NA	intron (NM_145799, intron 1 of 10)	L1ME4a|LINE|L1	9668	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
95653	chr17	38092551	38092850	+	0	NA	intron (NR_164156, intron 1 of 5).2	intron (NR_164156, intron 1 of 5).2	14438	NR_164156	101929950		NR_164156		LOC101929950	-	puromycin-sensitive aminopeptidase-like protein	pseudo
189565	chr5	175464601	175465030	+	0	NA	Intergenic	Intergenic	-13745	NM_001322978	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
201865	chr6	150600401	150601380	+	0	NA	intron (NM_001329799, intron 1 of 15)	CpG	1005	NM_001329799	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
57862	chr12	123361721	123361980	+	0	NA	intron (NM_018183, intron 1 of 31)	intron (NM_018183, intron 1 of 31)	2993	NR_107039	102466877		NR_107039	ENSG00000284425	MIR8072	hsa-mir-8072	microRNA 8072	ncRNA
232836	chr9	136758151	136759000	+	0	NA	promoter-TSS (NM_001345934)	promoter-TSS (NM_001345934)	-32	NM_001345934	138307		NM_178469	ENSG00000204001	LCN8	EP17|LCN5	lipocalin 8	protein-coding
172474	chr4	2058671	2060430	+	0	NA	exon (NM_178557, exon 1 of 3)	exon (NM_178557, exon 1 of 3)	223	NM_178557	339983		NM_178557	ENSG00000185818	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8 like	protein-coding
126649	chr2	28899171	28899530	+	0	NA	intron (NM_015131, intron 1 of 17)	L2b|LINE|L2	4683	NM_015131	23160		NM_015131	ENSG00000163811	WDR43	NET12|UTP5	WD repeat domain 43	protein-coding
49792	chr12	31951001	31951200	+	0	NA	Intergenic	LTR34|LTR|ERV1	-8315	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
201601	chr6	149357901	149358100	+	0	NA	intron (NM_001369506, intron 2 of 7)	AluSx1|SINE|Alu	39700	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
64477	chr14	24289621	24290080	+	0	NA	TTS (NM_001136050)	TTS (NM_001136050)	9610	NM_138452	115817		NM_138452	ENSG00000157379	DHRS1	SDR19C1	dehydrogenase/reductase 1	protein-coding
42497	chr11	70206371	70206530	+	0	NA	exon (NM_003824, exon 2 of 2)	exon (NM_003824, exon 2 of 2)	3154	NM_003824	8772		NM_003824	ENSG00000168040	FADD	GIG3|IMD90|MORT1	Fas associated via death domain	protein-coding
232497	chr9	136260401	136260880	+	0	NA	intron (NM_001378188, intron 19 of 25)	intron (NM_001378188, intron 19 of 25)	-14828	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
102499	chr17	75761971	75762730	+	0	NA	intron (NM_001381985, intron 5 of 8)	intron (NM_001381985, intron 5 of 8)	2842	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
38471	chr11	45802551	45803300	+	0	NA	Intergenic	Intergenic	-1147	NM_001145266	55343		NM_018389	ENSG00000181830	SLC35C1	CDG2C|FUCT1	solute carrier family 35 member C1	protein-coding
204081	chr7	2087751	2088050	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	1152	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
114580	chr19	12925621	12925880	+	0	NA	intron (NM_004461, intron 7 of 12)	AluSz|SINE|Alu	-4772	NR_149078	106144598		NR_149078	ENSG00000266975	FARSA-AS1	-	FARSA antisense RNA 1	ncRNA
4291	chr1	19885271	19885630	+	0	NA	intron (NM_015207, intron 1 of 7)	intron (NM_015207, intron 1 of 7)	3055	NM_015207	23252		NM_015207	ENSG00000169914	OTUD3	DUBA4	OTU deubiquitinase 3	protein-coding
29620	chr10	71768631	71769670	+	0	NA	intron (NM_022153, intron 1 of 6)	MER113|DNA|hAT-Charlie	4370	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
108563	chr18	74945851	74945960	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	259608	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
155386	chr22	38313101	38313790	+	0	NA	intron (NM_152221, intron 2 of 10)	intron (NM_152221, intron 2 of 10)	3988	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
140642	chr2	233475921	233476180	+	0	NA	non-coding (NR_168052, exon 34 of 34)	non-coding (NR_168052, exon 34 of 34)	13848	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
51240	chr12	50927251	50927550	+	0	NA	intron (NM_014033, intron 1 of 1)	intron (NM_014033, intron 1 of 1)	2385	NM_014033	25840		NM_014033	ENSG00000185432	TMT1A	AAM-B|AAMB|METTL7A	thiol methyltransferase 1A	protein-coding
210235	chr7	99372671	99373300	+	0	NA	Intergenic	Intergenic	-1745	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
190012	chr5	177480571	177481130	+	0	NA	Intergenic	AluSx|SINE|Alu	-7216	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
231564	chr9	131492751	131493050	+	0	NA	intron (NM_001384823, intron 29 of 29)	intron (NM_001384823, intron 29 of 29)	2414	NR_002914	26786		NR_002914	ENSG00000235284	SNORD62A	RNU62|U62|U62A	small nucleolar RNA, C/D box 62A	snoRNA
222253	chr8	133235071	133235980	+	0	NA	Intergenic	L1MC3|LINE|L1	44486	NM_080838	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
1724	chr1	5722921	5723000	+	0	NA	Intergenic	MER96|DNA|hAT-Tip100	139781	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
201951	chr6	151765421	151765750	+	0	NA	intron (NM_001385570, intron 2 of 8)	intron (NM_001385570, intron 2 of 8)	-40120	NM_001291230	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
157696	chr22	46366421	46367150	+	0	NA	intron (NM_001378328, intron 29 of 34)	intron (NM_001378328, intron 29 of 34)	31071	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
117616	chr19	23249451	23250680	+	0	NA	intron (NM_001355406, intron 1 of 4)	intron (NM_001355406, intron 1 of 4)	329	NM_001355404	440519		NM_001355404	ENSG00000196081	ZNF724	ZNF724P	zinc finger protein 724	protein-coding
6210	chr1	27475021	27475480	+	0	NA	intron (NM_006990, intron 1 of 8)	AluJr|SINE|Alu	14917	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
105897	chr18	3296871	3297950	+	0	NA	Intergenic	L1PB3|LINE|L1	34691	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
235899	chrX	52989871	52990370	+	0	NA	intron (NM_001242492, intron 1 of 4)	intron (NM_001242492, intron 1 of 4)	5352	NM_001242494	29057		NM_014138	ENSG00000268350	FAM156A	PRO0659|TMEM29	family with sequence similarity 156 member A	protein-coding
99537	chr17	50359271	50359800	+	0	NA	intron (NM_022167, intron 10 of 10)	intron (NM_022167, intron 10 of 10)	13409	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
217110	chr8	24954671	24955230	+	0	NA	intron (NM_006158, intron 1 of 3)	intron (NM_006158, intron 1 of 3)	-1083	NR_106900	102465506		NR_106900	ENSG00000283327	MIR6841	hsa-mir-6841	microRNA 6841	ncRNA
74486	chr15	60000101	60001200	+	0	NA	Intergenic	Intergenic	-3661	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
114669	chr19	13074071	13074230	+	0	NA	intron (NM_001271043, intron 5 of 10)	intron (NM_001271043, intron 5 of 10)	28708	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
49981	chr12	42139951	42140050	+	0	NA	intron (NM_173601, intron 1 of 7)	AluY|SINE|Alu	4874	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
224557	chr9	19406001	19406850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2584	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
76369	chr15	74599771	74600380	+	0	NA	Intergenic	Intergenic	-8297	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
56132	chr12	111034601	111035830	+	0	NA	intron (NM_015267, intron 1 of 21)	CpG	1050	NM_015267	23316		NM_015267	ENSG00000111249	CUX2	CDP2|CUTL2|DEE67|EIEE67	cut like homeobox 2	protein-coding
189472	chr5	173065121	173065930	+	0	NA	intron (NM_001168393, intron 1 of 3)	intron (NM_001168393, intron 1 of 3)	9173	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
76167	chr15	72809171	72809730	+	0	NA	Intergenic	Intergenic	-25692	NM_001365225	83440		NM_031284	ENSG00000159322	ADPGK	2610017G09Rik|ADP-GK	ADP dependent glucokinase	protein-coding
230330	chr9	127979251	127979990	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	1369	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
118100	chr19	34426421	34426680	+	0	NA	TTS (NM_001353433)	TTS (NM_001353433)	-1831	NM_005499	10054		NM_005499	ENSG00000126261	UBA2	ACCES|ARX|HRIHFB2115|SAE2	ubiquitin like modifier activating enzyme 2	protein-coding
110661	chr19	2250051	2250740	+	0	NA	promoter-TSS (NR_036207)	promoter-TSS (NR_036207)	-244	NR_036207	100423031		NR_036207	ENSG00000284272	MIR4321	-	microRNA 4321	ncRNA
68482	chr14	88004701	88005370	+	0	NA	promoter-TSS (NM_003608)	promoter-TSS (NM_003608)	-100	NM_003608	8477		NM_003608	ENSG00000140030	GPR65	TDAG8|hTDAG8	G protein-coupled receptor 65	protein-coding
173710	chr4	15765621	15766800	+	0	NA	Intergenic	Intergenic	-12118	NM_001775	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
107681	chr18	49401351	49401850	+	0	NA	intron (NM_001374431, intron 2 of 16)	intron (NM_001374431, intron 2 of 16)	59045	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
218606	chr8	56028501	56029080	+	0	NA	Intergenic	AluJo|SINE|Alu	45111	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
179020	chr4	165009921	165010180	+	0	NA	Intergenic	Intergenic	-21949	NM_001258025	166655		NM_152620	ENSG00000176979	TRIM60	RNF129|RNF33	tripartite motif containing 60	protein-coding
166370	chr3	113018251	113020180	+	0	NA	intron (NR_134969, intron 1 of 5)	intron (NR_134969, intron 1 of 5)	456	NM_001319111	25871		NM_015412	ENSG00000163608	NEPRO	ANXD3|C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
132206	chr2	102033371	102033730	+	0	NA	Intergenic	Intergenic	34589	NR_048564	7850		NM_004633	ENSG00000115590	IL1R2	CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB	interleukin 1 receptor type 2	protein-coding
185701	chr5	132002551	132002850	+	0	NA	intron (NM_001205250, intron 1 of 20)	intron (NM_001205250, intron 1 of 20)	8958	NM_001205247	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
166845	chr3	123151601	123152150	+	0	NA	intron (NR_028444, intron 13 of 15)	(CCTG)n|Simple_repeat|Simple_repeat	-9919	NR_106960	102465667		NR_106960	ENSG00000284421	MIR7110	hsa-mir-7110	microRNA 7110	ncRNA
164904	chr3	71126321	71126580	+	0	NA	intron (NM_001244810, intron 6 of 20)	AluY|SINE|Alu	4136	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
182668	chr5	67245801	67246350	+	0	NA	Intergenic	Intergenic	-49276	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
200089	chr6	130183271	130184350	+	0	NA	intron (NM_001258275, intron 9 of 13)	GA-rich|Low_complexity|Low_complexity	32075	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
120964	chr19	45708021	45708900	+	0	NA	Intergenic	L1MEd|LINE|L1	6818	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
130087	chr2	74504201	74504400	+	0	NA	promoter-TSS (NM_001009812)	promoter-TSS (NM_001009812)	-984	NM_001009812	85474		NM_001009812	ENSG00000179528	LBX2	LP3727	ladybird homeobox 2	protein-coding
149213	chr21	25428651	25428950	+	0	NA	intron (NR_024027, intron 2 of 4)	intron (NR_024027, intron 2 of 4)	2901	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
217069	chr8	23457061	23458980	+	0	NA	promoter-TSS (NM_001128930)	promoter-TSS (NM_001128930)	-289	NM_001128930	9583		NM_004901	ENSG00000197217	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
218956	chr8	61023471	61023860	+	0	NA	Intergenic	Intergenic	-55917	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
214016	chr7	143259851	143260450	+	0	NA	intron (NR_133932, intron 2 of 2)	L1MD3|LINE|L1	-3279	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
77014	chr15	78538721	78538980	+	0	NA	Intergenic	Intergenic	-1555	NM_001330673	5685		NM_002789	ENSG00000041357	PSMA4	HC9|HsT17706|PSC9	proteasome 20S subunit alpha 4	protein-coding
105391	chr17	82729651	82729750	+	0	NA	Intergenic	CpG	-5915	NM_022158	64122		NM_022158	ENSG00000167363	FN3K	-	fructosamine 3 kinase	protein-coding
149982	chr21	36705971	36706530	+	0	NA	intron (NM_005069, intron 1 of 10)	intron (NM_005069, intron 1 of 10)	7135	NM_009586	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
164654	chr3	66503121	66503580	+	0	NA	Intergenic	Intergenic	-2229	NM_001377345	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
21174	chr1	203776751	203777150	+	0	NA	TTS (NM_001136190)	TTS (NM_001136190)	7312	NM_001282878	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
104830	chr17	81819771	81820530	+	0	NA	Intergenic	Intergenic	13141	NM_001288798	348262		NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
239481	chrY	56740701	56741530	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-213140	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
230284	chr9	127935421	127935880	+	0	NA	non-coding (NR_165631, exon 4 of 4)	non-coding (NR_165631, exon 4 of 4)	2204	NR_165632	8818		NM_003863	ENSG00000136908	DPM2	CDG1U	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein-coding
40341	chr11	63936421	63937230	+	0	NA	Intergenic	Intergenic	-2177	NM_024771	79829		NM_024771	ENSG00000110583	NAA40	NAT11|NatD|PATT1|hNatD	N-alpha-acetyltransferase 40, NatD catalytic subunit	protein-coding
16910	chr1	155879651	155879750	+	0	NA	intron (NM_152280, intron 2 of 3)	intron (NM_152280, intron 2 of 3)	20133	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
170853	chr3	191246001	191246300	+	0	NA	intron (NM_198184, intron 3 of 4)	intron (NM_198184, intron 3 of 4)	-11545	NR_133663	106480738		NR_133663	ENSG00000233308	OSTN-AS1	-	OSTN antisense RNA 1	ncRNA
3471	chr1	15955901	15956300	+	0	NA	intron (NM_001324138, intron 2 of 14)	intron (NM_001324138, intron 2 of 14)	20001	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
77837	chr15	88646271	88646950	+	0	NA	intron (NM_001303237, intron 2 of 3)	intron (NM_001303237, intron 2 of 3)	7594	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
47536	chr12	4275211	4276000	+	0	NA	promoter-TSS (NR_149145)	promoter-TSS (NR_149145)	-128	NR_149146	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
43734	chr11	86061051	86061150	+	0	NA	intron (NM_001206947, intron 1 of 18)	AluSx1|SINE|Alu	7984	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
27797	chr10	35598051	35598150	+	0	NA	Intergenic	L2|LINE|L2	-7241	NM_153368	219770		NM_153368	ENSG00000177291	GJD4	CX40.1	gap junction protein delta 4	protein-coding
229871	chr9	126488401	126488930	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-78161	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
193389	chr6	30364521	30365030	+	0	NA	Intergenic	Intergenic	19619	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
184977	chr5	113515471	113515980	+	0	NA	intron (NM_001345976, intron 2 of 27)	MER34A1|LTR|ERV1	2031	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
173567	chr4	10104571	10105350	+	0	NA	intron (NM_017491, intron 2 of 14)	intron (NM_017491, intron 2 of 14)	11839	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
46043	chr11	122690701	122691800	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	35528	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
100213	chr17	59161401	59161600	+	0	NA	intron (NM_018304, intron 1 of 9)	AluJb|SINE|Alu	5754	NM_018304	55771		NM_018304	ENSG00000068489	PRR11	-	proline rich 11	protein-coding
164753	chr3	69079321	69080590	+	0	NA	intron (NM_198195, intron 1 of 16)	CpG	410	NM_003968	9039		NM_003968	ENSG00000144744	UBA3	NAE2|UBE1C|hUBA3	ubiquitin like modifier activating enzyme 3	protein-coding
93780	chr17	20268501	20268700	+	0	NA	intron (NM_001033555, intron 10 of 12)	intron (NM_001033555, intron 10 of 12)	-52574	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
212167	chr7	116872771	116872930	+	0	NA	intron (NM_006136, intron 1 of 9)	intron (NM_006136, intron 1 of 9)	10263	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
100982	chr17	64572751	64573500	+	0	NA	intron (NM_022739, intron 9 of 18)	intron (NM_022739, intron 9 of 18)	66148	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
117962	chr19	33296251	33296900	+	0	NA	Intergenic	Intergenic	5959	NM_004364	1050		NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	CCAAT enhancer binding protein alpha	protein-coding
110805	chr19	2463401	2464000	+	0	NA	Intergenic	AluJb|SINE|Alu	-1515	NR_134931	101928602		NR_134931	ENSG00000267201	LINC01775	-	long intergenic non-protein coding RNA 1775	ncRNA
163233	chr3	50265201	50265600	+	0	NA	Intergenic	Intergenic	1971	NR_110702	101928931		NR_110702		SEMA3B-AS1	-	SEMA3B antisense RNA 1 (head to head)	ncRNA
237711	chrX	124641821	124642290	+	0	NA	intron (NM_001163279, intron 10 of 31)	intron (NM_001163279, intron 10 of 31)	295492	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
189	chr1	683751	683850	+	0	NA	Intergenic	L1MA7|LINE|L1	2854	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
196938	chr6	52535801	52536450	+	0	NA	intron (NM_012288, intron 1 of 10)	intron (NM_012288, intron 1 of 10)	40935	NM_012288	9697		NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
63350	chr13	114031451	114031950	+	0	NA	intron (NM_001320822, intron 4 of 23).2	intron (NM_001320822, intron 4 of 23).2	46255	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
62830	chr13	109774071	109774430	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	12333	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
92574	chr17	9226521	9227180	+	0	NA	intron (NM_004822, intron 6 of 6)	intron (NM_004822, intron 6 of 6)	-47732	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
146267	chr20	49028951	49029250	+	0	NA	intron (NM_006420, intron 37 of 38)	intron (NM_006420, intron 37 of 38)	16956	NR_110625	102723483		NR_110624	ENSG00000227431	CSE1L-DT	CSE1L-AS1	CSE1L divergent transcript	ncRNA
19683	chr1	181015151	181015250	+	0	NA	intron (NM_005819, intron 1 of 7)	intron (NM_005819, intron 1 of 7)	7670	NM_005819	10228		NM_005819	ENSG00000135823	STX6	-	syntaxin 6	protein-coding
20224	chr1	193164671	193165030	+	0	NA	intron (NM_024529, intron 10 of 16)	intron (NM_024529, intron 10 of 16)	21763	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
193083	chr6	28838101	28839350	+	0	NA	Intergenic	Intergenic	24952	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
185639	chr5	131531901	131532600	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	102979	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
50938	chr12	49358671	49359380	+	0	NA	Intergenic	Intergenic	-8437	NM_023071	65244		NM_023071	ENSG00000123352	SPATS2	Nbla00526|P59SCR|SCR59|SPATA10	spermatogenesis associated serine rich 2	protein-coding
85831	chr16	57001301	57001900	+	0	NA	intron (NR_169520, intron 1 of 47)	intron (NR_169520, intron 1 of 47)	12043	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
198732	chr6	108297101	108297300	+	0	NA	intron (NR_136553, intron 1 of 8)	AluSx1|SINE|Alu	2146	NM_145315	246269		NM_145315	ENSG00000135537	AFG1L	AFG1|LACE1|c222389	AFG1 like ATPase	protein-coding
81839	chr16	11581571	11582450	+	0	NA	intron (NR_024320, intron 1 of 3)	L1MA5|LINE|L1	4363	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
171987	chr4	946821	947750	+	0	NA	intron (NM_001297425, intron 1 of 8)	intron (NM_001297425, intron 1 of 8)	14825	NM_032326	84286		NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
234515	chrX	19535401	19535600	+	0	NA	3' UTR (NM_001024666, exon 17 of 17)	3' UTR (NM_001024666, exon 17 of 17)	-20239	NM_001001671	389840		NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
74295	chr15	57868201	57868600	+	0	NA	Intergenic	LTR12_|LTR|ERV1	145623	NM_170697	8854		NM_003888	ENSG00000128918	ALDH1A2	DIH4|RALDH(II)|RALDH2|RALDH2-T	aldehyde dehydrogenase 1 family member A2	protein-coding
115407	chr19	15289751	15290450	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-9649	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
213935	chr7	142636571	142637930	+	0	NA	intron (NM_001363538, intron 10 of 11)	intron (NM_001363538, intron 10 of 11)	-29049	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
22930	chr1	225941751	225941850	+	0	NA	promoter-TSS (NM_003240)	promoter-TSS (NM_003240)	-308	NM_001172425	7044		NM_003240	ENSG00000143768	LEFTY2	EBAF|LEFTA|LEFTYA|TGFB4	left-right determination factor 2	protein-coding
50289	chr12	46373611	46374750	+	0	NA	Intergenic	Intergenic	-1407	NM_018976	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
178917	chr4	158771451	158771750	+	0	NA	intron (NM_020840, intron 1 of 16)	intron (NM_020840, intron 1 of 16)	2574	NM_001346043	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
85138	chr16	37771271	37771430	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2024798	NR_033985	400533		NR_033985	ENSG00000261122	LINC02167	-	long intergenic non-protein coding RNA 2167	ncRNA
53	chr1	266001	266200	+	0	NA	Intergenic	L1M5|LINE|L1	-59503	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
174057	chr4	26891701	26892200	+	0	NA	intron (NM_020860, intron 1 of 11)	THE1B|LTR|ERVL-MaLR	31109	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
34543	chr10	132987871	132988030	+	0	NA	Intergenic	Intergenic	22416	NR_046231	399829		NR_046231	ENSG00000240707	LINC01168	-	long intergenic non-protein coding RNA 1168	ncRNA
125075	chr2	9655171	9655850	+	0	NA	Intergenic	L3|LINE|CR1	-24513	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
182940	chr5	70927971	70928130	+	0	NA	intron (NM_017411, intron 1 of 8).5	AluJb|SINE|Alu	2963	NM_017411	6607		NM_017411	ENSG00000205571	SMN2	BCD541|C-BCD541|GEMIN1|SMNC|TDRD16B	survival of motor neuron 2, centromeric	protein-coding
196074	chr6	42262171	42262550	+	0	NA	intron (NM_033502, intron 8 of 17)	intron (NM_033502, intron 8 of 17)	-44499	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
137185	chr2	191139051	191139350	+	0	NA	intron (NM_003151, intron 3 of 23)	L1PB2|LINE|L1	11794	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
28705	chr10	61397571	61397930	+	0	NA	Intergenic	Intergenic	-54889	NR_120643	101928781		NR_120643		TMEM26-AS1	-	TMEM26 antisense RNA 1	ncRNA
124473	chr19	58543731	58546600	+	0	NA	intron (NM_005762, intron 1 of 16)	intron (NM_005762, intron 1 of 16)	1101	NM_005762	10155		NM_005762	ENSG00000130726	TRIM28	KAP1|PPP1R157|RNF96|TF1B|TIF1B|TIF1beta	tripartite motif containing 28	protein-coding
112809	chr19	7500821	7501550	+	0	NA	exon (NM_198534, exon 2 of 9)	exon (NM_198534, exon 2 of 9)	3637	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
74260	chr15	57036751	57037650	+	0	NA	intron (NM_001322164, intron 3 of 19)	AluSq2|SINE|Alu	117755	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
78431	chr15	92780951	92781050	+	0	NA	Intergenic	Intergenic	-14484	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
822	chr1	1567701	1568230	+	0	NA	intron (NM_014188, intron 1 of 4)	intron (NM_014188, intron 1 of 4)	6898	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
61744	chr13	74207401	74207800	+	0	NA	Intergenic	AluSg7|SINE|Alu	-23844	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
123786	chr19	55120751	55121080	+	0	NA	Intergenic	Intergenic	2377	NR_107015	102466872		NR_107015	ENSG00000275863	MIR7975	hsa-mir-7975	microRNA 7975	ncRNA
79698	chr16	1292721	1293180	+	0	NA	Intergenic	AluJb|SINE|Alu	-16202	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
90716	chr17	1871651	1872550	+	0	NA	intron (NM_001355120, intron 5 of 16)	UCON78|DNA|DNA	42095	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
13202	chr1	112633401	112634000	+	0	NA	intron (NM_006135, intron 1 of 9)	L1MA7|LINE|L1	13868	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
209118	chr7	74968471	74969030	+	0	NA	intron (NM_001145064, intron 1 of 8)	AluJr|SINE|Alu	4045	NM_001145064	729438		NM_001145064	ENSG00000274070	CASTOR2	GATSL1|GATSL2	cytosolic arginine sensor for mTORC1 subunit 2	protein-coding
91018	chr17	2800301	2800530	+	0	NA	intron (NM_001100398, intron 1 of 23)	intron (NM_001100398, intron 1 of 23)	3977	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
134883	chr2	148876501	148877700	+	0	NA	intron (NM_004522, intron 1 of 25)	intron (NM_004522, intron 1 of 25)	1873	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
126676	chr2	29322851	29323150	+	0	NA	intron (NM_004304, intron 6 of 28)	intron (NM_004304, intron 6 of 28)	-99100	NM_001353765	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
53374	chr12	64675751	64676300	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-53420	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
35110	chr11	653551	654430	+	0	NA	exon (NM_001293634, exon 10 of 11)	exon (NM_001293634, exon 10 of 11)	16721	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
145500	chr20	43953071	43953230	+	0	NA	intron (NM_001098798, intron 1 of 7)	MLT1D|LTR|ERVL-MaLR	7254	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
226170	chr9	64368871	64369730	+	0	NA	promoter-TSS (NR_146419)	promoter-TSS (NR_146419)	-94	NR_146419	110006327		NR_146419		ANKRD20A4-ANKRD20A20P	-	ANKRD20A4-ANKRD20A20P readthrough	ncRNA
55943	chr12	109973351	109974050	+	0	NA	intron (NM_139201, intron 7 of 14)	L1MEf|LINE|L1	22668	NM_014776	9815		NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
54038	chr12	75738451	75738750	+	0	NA	Intergenic	MamGypsy2-I|LTR|Gypsy	-226991	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
166527	chr3	114481171	114481330	+	0	NA	intron (NR_121661, intron 1 of 2)	intron (NR_121661, intron 1 of 2)	27657	NR_121661	101929754		NR_121661	ENSG00000242290	ZBTB20-AS5	-	ZBTB20 antisense RNA 5	ncRNA
182696	chr5	68217751	68218450	+	0	NA	intron (NM_181523, intron 1 of 15)	intron (NM_181523, intron 1 of 15)	2344	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
197423	chr6	73585251	73586430	+	0	NA	Intergenic	Intergenic	-64808	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
130314	chr2	84966821	84967300	+	0	NA	Intergenic	L2c|LINE|L2	-4101	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
80143	chr16	2087251	2087550	+	0	NA	intron (NM_001370404, intron 37 of 40)	intron (NM_001370404, intron 37 of 40)	2884	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
204814	chr7	5683151	5684000	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-3114	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
202085	chr6	154267651	154268150	+	0	NA	intron (NM_001130700, intron 2 of 11)	MER52C|LTR|ERV1	62181	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
87975	chr16	80569521	80570700	+	0	NA	promoter-TSS (NR_104665)	promoter-TSS (NR_104665)	-500	NR_104665	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
186211	chr5	134374221	134374780	+	0	NA	intron (NM_003337, intron 2 of 5)	intron (NM_003337, intron 2 of 5)	2931	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
20712	chr1	200805751	200805850	+	0	NA	intron (NM_203459, intron 2 of 16)	intron (NM_203459, intron 2 of 16)	66228	NM_203459	23271		NM_203459	ENSG00000118200	CAMSAP2	CAMSAP1L1	calmodulin regulated spectrin associated protein family member 2	protein-coding
155501	chr22	38656051	38657450	+	0	NA	promoter-TSS (NM_015373)	promoter-TSS (NM_015373)	97	NM_001002880	25776		NM_015373	ENSG00000100211	CBY1	C22orf2|CBY|Chibby1|HS508I15A|PGEA1|PIGEA-14|PIGEA14|arb1	chibby 1, beta catenin antagonist	protein-coding
1960	chr1	6585171	6585330	+	0	NA	intron (NM_005341, intron 3 of 10)	L2a|LINE|L2	5256	NM_001278647	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
217363	chr8	27895151	27895450	+	0	NA	intron (NM_173833, intron 7 of 8)	intron (NM_173833, intron 7 of 8)	-9184	NR_036249	100422828		NR_036249	ENSG00000265847	MIR4287	-	microRNA 4287	ncRNA
200383	chr6	134250201	134250400	+	0	NA	intron (NM_001143676, intron 2 of 13)	intron (NM_001143676, intron 2 of 13)	67758	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
122422	chr19	49457601	49458750	+	0	NA	intron (NM_001145396, intron 1 of 15)	AluSx1|SINE|Alu	4950	NM_001145396	126133		NM_153329	ENSG00000161618	ALDH16A1	-	aldehyde dehydrogenase 16 family member A1	protein-coding
108421	chr18	69946571	69946730	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	1223	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
9254	chr1	46202801	46203830	+	0	NA	promoter-TSS (NM_001013615)	promoter-TSS (NM_001013615)	-19	NM_001013615	541468		NM_001013615	ENSG00000171357	LURAP1	C1orf190|LRAP35a|LRP35A	leucine rich adaptor protein 1	protein-coding
53122	chr12	57831271	57832100	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	-6993	NR_029847	407016		NR_029847	ENSG00000207789	MIR26A2	MIRN26A2|mir-26a-2	microRNA 26a-2	ncRNA
186659	chr5	138578171	138578580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2974	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
63451	chr13	114120701	114121050	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	11748	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
39248	chr11	57700701	57701100	+	0	NA	3' UTR (NM_015457, exon 12 of 12)	3' UTR (NM_015457, exon 12 of 12)	11315	NR_157587	219541		NM_153450	ENSG00000156603	MED19	DT2P1G7|LCMR1|MED19AS	mediator complex subunit 19	protein-coding
61393	chr13	51582121	51582580	+	0	NA	Intergenic	Intergenic	-2112	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
211474	chr7	105106301	105106750	+	0	NA	exon (NM_018682, exon 19 of 26)	exon (NM_018682, exon 19 of 26)	92320	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
84537	chr16	30532421	30532930	+	0	NA	exon (NM_001305018, exon 3 of 3)	exon (NM_001305018, exon 3 of 3)	2295	NM_001305019	65988		NM_023931	ENSG00000169955	ZNF747	-	zinc finger protein 747	protein-coding
186909	chr5	139586501	139586900	+	0	NA	intron (NM_181838, intron 2 of 7)	AluY|SINE|Alu	25361	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
34645	chr10	133323571	133323730	+	0	NA	TTS (NM_001321617)	TTS (NM_001321617)	-11313	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
168105	chr3	138579221	138579480	+	0	NA	intron (NM_001320598, intron 2 of 17)	L1M1|LINE|L1	12606	NM_001320600	80321		NM_024491	ENSG00000114107	CEP70	BITE	centrosomal protein 70	protein-coding
141349	chr2	240611551	240612400	+	0	NA	intron (NM_001195381, intron 2 of 5)	L2b|LINE|L2	6545	NM_001195381	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
40440	chr11	64201721	64201980	+	0	NA	intron (NM_001282653, intron 10 of 13)	intron (NM_001282653, intron 10 of 13)	-4070	NM_001382448	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
149934	chr21	36299061	36299450	+	0	NA	Intergenic	Intergenic	-20934	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
217445	chr8	28619571	28620300	+	0	NA	Intergenic	AluY|SINE|Alu	81529	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
116375	chr19	17935371	17936180	+	0	NA	intron (NM_138442, intron 1 of 4)	AluSx1|SINE|Alu	679	NM_138442	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
148224	chr20	63592001	63592400	+	0	NA	intron (NM_012384, intron 8 of 9)	CpG-18106	-17961	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
116840	chr19	18590751	18591950	+	0	NA	intron (NM_001100419, intron 4 of 4)	AluSc8|SINE|Alu	2552	NM_001100418	55049		NM_017967	ENSG00000006015	REX1BD	C19orf60	required for excision 1-B domain containing	protein-coding
2114	chr1	8152351	8154200	+	0	NA	Intergenic	LTR12|LTR|ERV1	-55397	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
230232	chr9	127873971	127874330	+	0	NA	promoter-TSS (NM_001318122)	promoter-TSS (NM_001318122)	-670	NM_001318122	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
13556	chr1	115641471	115642980	+	0	NA	promoter-TSS (NM_001172412)	promoter-TSS (NM_001172412)	255	NM_001172411	81839		NM_138959	ENSG00000173218	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding
17754	chr1	159012401	159013450	+	0	NA	intron (NM_001376587, intron 1 of 11)	intron (NM_001376587, intron 1 of 11)	3018	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
93875	chr17	21041071	21041230	+	0	NA	intron (NM_015276, intron 1 of 12)	AluSg|SINE|Alu	1861	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
233164	chr9	137179021	137179280	+	0	NA	intron (NM_013366, intron 10 of 12)	intron (NM_013366, intron 10 of 12)	-7094	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
121205	chr19	46604751	46605580	+	0	NA	intron (NM_001329923, intron 2 of 6)	intron (NM_001329923, intron 2 of 6)	3093	NM_001329922	808		NM_005184	ENSG00000160014	CALM3	CALM|CAM1|CAM2|CAMB|CPVT6|CaM|CaMIII|HEL-S-72|LQT16|PHKD|PHKD3	calmodulin 3	protein-coding
160800	chr3	32992451	32993460	+	0	NA	Intergenic	Intergenic	41311	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
99701	chr17	50857571	50858130	+	0	NA	Intergenic	AluSx|SINE|Alu	8504	NM_001243885	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
166272	chr3	112475301	112475500	+	0	NA	intron (NM_181780, intron 2 of 4)	intron (NM_181780, intron 2 of 4)	24072	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
94764	chr17	30821521	30822280	+	0	NA	intron (NM_015986, intron 1 of 7)	L1MB7|LINE|L1	2792	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
213006	chr7	131007221	131008270	+	0	NA	intron (NR_109850, intron 3 of 5)	L3|LINE|CR1	94281	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
60208	chr13	40483601	40484280	+	0	NA	Intergenic	Intergenic	-2934	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
30137	chr10	74079271	74079500	+	0	NA	intron (NM_014000, intron 6 of 21)	intron (NM_014000, intron 6 of 21)	71443	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
143368	chr20	26285551	26285850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-76467	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
124860	chr2	8168451	8168950	+	0	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	159719	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
207359	chr7	44083851	44084650	+	0	NA	Intergenic	Intergenic	-1710	NM_001284331	27434		NM_013284	ENSG00000122678	POLM	Pol Mu|Tdt-N	DNA polymerase mu	protein-coding
137357	chr2	196156851	196157330	+	0	NA	intron (NM_004226, intron 2 of 7)	AluSz|SINE|Alu	14488	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
14413	chr1	144313321	144314530	+	0	NA	promoter-TSS (NR_160535)	promoter-TSS (NR_160535)	13	NR_160535	105371215		NR_160535		LOC105371215	-	uncharacterized LOC105371215	ncRNA
163914	chr3	52542501	52543350	+	0	NA	Intergenic	Intergenic	6320	NM_001124767	440957		NM_001124767	ENSG00000168273	UQCC5	C3orf78|SMIM4	ubiquinol-cytochrome c reductase complex assembly factor 5	protein-coding
174700	chr4	42519721	42520730	+	0	NA	intron (NM_001105529, intron 21 of 35)	intron (NM_001105529, intron 21 of 35)	122737	NM_001080505	152573		NM_001080505	ENSG00000178343	SHISA3	hShisa3	shisa family member 3	protein-coding
100934	chr17	64477121	64477500	+	0	NA	TTS (NM_007215)	TTS (NM_007215)	19744	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
59443	chr13	25882901	25883300	+	0	NA	intron (NM_016529, intron 33 of 36)	MIR|SINE|MIR	168916	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
18021	chr1	160570651	160571130	+	0	NA	intron (NM_003874, intron 1 of 6)	MLT1J|LTR|ERVL-MaLR	8606	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
54705	chr12	93437371	93437900	+	0	NA	intron (NM_003348, intron 1 of 3)	AluSz|SINE|Alu	4312	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
47404	chr12	2876511	2878250	+	0	NA	promoter-TSS (NM_001243088)	promoter-TSS (NM_001243088)	157	NM_001257098	83695		NM_001252499	ENSG00000171792	RHNO1	C12orf32|HKMT1188|RHINO	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding
198784	chr6	108894371	108894880	+	0	NA	intron (NM_001286609, intron 5 of 16)	intron (NM_001286609, intron 5 of 16)	29478	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
169742	chr3	172514721	172514980	+	0	NA	intron (NM_003810, intron 2 of 4)	intron (NM_003810, intron 2 of 4)	8580	NM_001190943	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
11666	chr1	91817371	91817530	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	68701	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
73284	chr15	41861351	41862050	+	0	NA	intron (NM_016642, intron 45 of 67)	intron (NM_016642, intron 45 of 67)	4851	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
168564	chr3	148955401	148956050	+	0	NA	Intergenic	Intergenic	-35683	NM_001184721	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
77966	chr15	89375601	89376000	+	0	NA	intron (NR_133003, intron 1 of 6)	intron (NR_133003, intron 1 of 6)	-2242	NR_015411	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
9982	chr1	54995201	54996100	+	0	NA	Intergenic	L2a|LINE|L2	-3283	NM_057176	7809		NM_057176	ENSG00000162399	BSND	BART|DFNB73	barttin CLCNK type accessory subunit beta	protein-coding
81054	chr16	4320571	4321130	+	0	NA	intron (NM_032575, intron 1 of 6).2	intron (NM_032575, intron 1 of 6).2	4783	NM_032575	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
203804	chr7	1288401	1288800	+	0	NA	Intergenic	Intergenic	55728	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
191714	chr6	13682801	13683200	+	0	NA	intron (NM_005493, intron 2 of 13)	L1ME2z|LINE|L1	28835	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
143396	chr20	29318771	29318930	+	0	NA	Intergenic	Intergenic	98111	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
100078	chr17	58301501	58301700	+	0	NA	3' UTR (NM_024418, exon 31 of 31)	3' UTR (NM_024418, exon 31 of 31)	-20665	NM_000250	4353		NM_000250	ENSG00000005381	MPO	-	myeloperoxidase	protein-coding
119141	chr19	39377321	39378030	+	0	NA	exon (NM_001384584, exon 9 of 15)	exon (NM_001384584, exon 9 of 15)	13431	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
146425	chr20	49593451	49593550	+	0	NA	Intergenic	Intergenic	-25363	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
131128	chr2	91442101	91442750	+	0	NA	Intergenic	CpG	217524	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
200910	chr6	139134501	139135500	+	0	NA	promoter-TSS (NM_016217)	promoter-TSS (NM_016217)	-80	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
226590	chr9	73115921	73116180	+	0	NA	Intergenic	Intergenic	-35815	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
229793	chr9	125260151	125260450	+	0	NA	Intergenic	AluJb|SINE|Alu	-1526	NM_001354294	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
207053	chr7	39633521	39634750	+	0	NA	intron (NM_005402, intron 1 of 4)	intron (NM_005402, intron 1 of 4)	10563	NM_005402	5898		NM_005402	ENSG00000006451	RALA	HINCONS|RAL	RAS like proto-oncogene A	protein-coding
82146	chr16	14827251	14827550	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-2698	NR_023387	730013		NR_023387	ENSG00000290943	ABCC6P2	-	ATP binding cassette subfamily C member 6 pseudogene 2	pseudo
91326	chr17	4375001	4375950	+	0	NA	Intergenic	L2a|LINE|L2	-8801	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
5334	chr1	25251901	25252380	+	0	NA	intron (NR_135788, intron 1 of 3)	AluJb|SINE|Alu	-4621	NR_135143	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
171239	chr3	195784671	195785080	+	0	NA	exon (NM_001322468, exon 7 of 42)	exon (NM_001322468, exon 7 of 42)	27054	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
81542	chr16	9107151	9108330	+	0	NA	intron (NM_014117, intron 3 of 3)	intron (NM_014117, intron 3 of 3)	16096	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
162581	chr3	48679601	48680000	+	0	NA	intron (NM_184231, intron 7 of 12)	intron (NM_184231, intron 7 of 12)	6115	NM_016453	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
96181	chr17	39731871	39732030	+	0	NA	Intergenic	AluSq4|SINE|Alu	-1387	NM_001330206	84299		NM_032339	ENSG00000141741	MIEN1	C17orf37|C35|ORB3|RDX12|XTP4	migration and invasion enhancer 1	protein-coding
78330	chr15	90991671	90992330	+	0	NA	intron (NM_199413, intron 1 of 13)	L2a|LINE|L2	2535	NM_199413	9055		NM_003981	ENSG00000198901	PRC1	ASE1|MAP65	protein regulator of cytokinesis 1	protein-coding
6177	chr1	27434221	27434480	+	0	NA	intron (NM_006990, intron 1 of 8)	MIR3|SINE|MIR	41728	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
198683	chr6	108052251	108052360	+	0	NA	intron (NM_014028, intron 3 of 5)	AluY|SINE|Alu	22436	NM_014028	28962		NM_014028	ENSG00000081087	OSTM1	GIPN|GL|HSPC019|OPTB5	osteoclastogenesis associated transmembrane protein 1	protein-coding
219991	chr8	89904921	89905180	+	0	NA	intron (NM_001126111, intron 1 of 5)	intron (NM_001126111, intron 1 of 5)	2480	NM_001126111	734		NM_004337	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
177889	chr4	128852951	128853250	+	0	NA	intron (NM_199320, intron 6 of 10)	AluSx3|SINE|Alu	41256	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
52079	chr12	54050051	54050780	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	-3420	NM_153633	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
195608	chr6	37654051	37654430	+	0	NA	intron (NM_153487, intron 6 of 16)	intron (NM_153487, intron 6 of 16)	43643	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
12464	chr1	107842071	107842680	+	0	NA	intron (NM_006113, intron 2 of 26)	MLT1O|LTR|ERVL-MaLR	-54848	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
192761	chr6	26456601	26456800	+	0	NA	Intergenic	(AGCTGAG)n|Simple_repeat|Simple_repeat	-1204	NM_001197233	11120		NM_007049	ENSG00000112763	BTN2A1	BK14H9.1|BT2.1|BTF1|BTN2.1|DJ3E1.1	butyrophilin subfamily 2 member A1	protein-coding
28038	chr10	43249401	43249750	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	17490	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
190516	chr5	180540321	180540580	+	0	NA	intron (NR_163438, intron 2 of 10)	MER47A|DNA|TcMar-Tigger	-1204	NM_001370474	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
192490	chr6	24959001	24959730	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-23405	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
149078	chr21	15735801	15736280	+	0	NA	intron (NM_001352560, intron 1 of 23)	L1M5|LINE|L1	6058	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
70379	chr14	101916421	101917080	+	0	NA	intron (NM_178586, intron 12 of 12)	intron (NM_178586, intron 12 of 12)	-47823	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
92713	chr17	14197601	14198530	+	0	NA	intron (NM_001303, intron 6 of 6)	intron (NM_001303, intron 6 of 6)	38797	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
96888	chr17	42111171	42111330	+	0	NA	intron (NM_024119, intron 4 of 13)	intron (NM_024119, intron 4 of 13)	1464	NM_024119	79132		NM_024119	ENSG00000108771	DHX58	D11LGP2|D11lgp2e|LGP2|RLR-3	DExH-box helicase 58	protein-coding
141043	chr2	238236401	238237330	+	0	NA	Intergenic	Intergenic	3173	NM_001282434	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
229694	chr9	124659221	124659700	+	0	NA	intron (NR_038975, intron 1 of 1)	intron (NR_038975, intron 1 of 1)	1024	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
190831	chr6	1558471	1558630	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-46981	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
211102	chr7	102505551	102505850	+	0	NA	intron (NM_001367767, intron 5 of 20)	intron (NM_001367767, intron 5 of 20)	12077	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
86650	chr16	67456301	67456800	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	24607	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
195958	chr6	41945021	41945480	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSq2|SINE|Alu	-3402	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
132153	chr2	101743301	101744050	+	0	NA	intron (NM_001384572, intron 1 of 29)	AluSx|SINE|Alu	45410	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
19585	chr1	179298101	179298430	+	0	NA	intron (NR_045530, intron 1 of 13)	AluSc8|SINE|Alu	4468	NM_003101	6646		NM_003101	ENSG00000057252	SOAT1	ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT	sterol O-acyltransferase 1	protein-coding
191613	chr6	12125921	12126280	+	0	NA	intron (NM_002114, intron 4 of 8)	intron (NM_002114, intron 4 of 8)	113788	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
21322	chr1	204519821	204520330	+	0	NA	intron (NM_001204172, intron 1 of 2)	AluYe6|SINE|Alu	3669	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
233505	chr9	138236621	138237280	+	0	NA	intron (NR_146178, intron 5 of 14)	G-rich|Low_complexity|Low_complexity	20094	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
228305	chr9	98117601	98118500	+	0	NA	intron (NM_014788, intron 1 of 5)	intron (NM_014788, intron 1 of 5)	1172	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
170630	chr3	187026001	187026600	+	0	NA	intron (NM_003032, intron 1 of 6)	intron (NM_003032, intron 1 of 6)	4445	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
215729	chr8	1766171	1767000	+	0	NA	intron (NM_018941, intron 1 of 2)	AluY|SINE|Alu	-2001	NR_134303	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
143431	chr20	30164451	30164750	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	121937	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
197561	chr6	79646021	79646650	+	0	NA	intron (NM_031469, intron 1 of 3)	MIR3|SINE|MIR	15006	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
221769	chr8	127915471	127916080	+	0	NA	intron (NR_003367, intron 2 of 8)	MIR|SINE|MIR	32948	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
125498	chr2	12588001	12588200	+	0	NA	Intergenic	Intergenic	-128772	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
233932	chrX	2266921	2267450	+	0	NA	intron (NM_145177, intron 4 of 6)	intron (NM_145177, intron 4 of 6)	233354	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
22704	chr1	224004471	224004900	+	0	NA	intron (NR_136593, intron 2 of 4)	(T)n|Simple_repeat|Simple_repeat	11955	NR_136593	100287497		NR_136590		SEPTIN7P13	-	septin 7 pseudogene 13	pseudo
6125	chr1	27352501	27352700	+	0	NA	intron (NM_032872, intron 13 of 14)	AluY|SINE|Alu	10578	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
106456	chr18	13751171	13751330	+	0	NA	intron (NR_165427, intron 9 of 12)	L1PA6|LINE|L1	24577	NM_001378134	8731		NM_003799	ENSG00000101654	RNMT	CMT1|CMT1c|MET|Met|N7-MTase|RG7MT1|cm1p|hCMT1|hMet	RNA guanine-7 methyltransferase	protein-coding
127315	chr2	38780171	38780530	+	0	NA	intron (NM_024775, intron 2 of 2)	intron (NM_024775, intron 2 of 2)	2140	NM_024775	79833		NM_024775	ENSG00000152147	GEMIN6	-	gem nuclear organelle associated protein 6	protein-coding
37608	chr11	20110821	20111150	+	0	NA	intron (NM_145117, intron 36 of 37)	intron (NM_145117, intron 36 of 37)	49490	NM_001029865	120237		NM_001029865	ENSG00000109851	DBX1	HLX1	developing brain homeobox 1	protein-coding
122950	chr19	50721151	50721880	+	0	NA	Intergenic	Intergenic	-1713	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
214512	chr7	150478771	150479630	+	0	NA	3' UTR (NM_175571, exon 5 of 5)	3' UTR (NM_175571, exon 5 of 5)	28570	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
167781	chr3	133424921	133425380	+	0	NA	intron (NM_003571, intron 1 of 6)	intron (NM_003571, intron 1 of 6)	25094	NM_003571	8419		NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding
70177	chr14	100330601	100330800	+	0	NA	TTS (NM_207117)	TTS (NM_207117)	7361	NM_001350877	283600		NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDCMP|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
194839	chr6	34415271	34415930	+	0	NA	intron (NM_001202470, intron 5 of 8)	FLAM_A|SINE|Alu	10469	NM_001204091	6204		NM_001014	ENSG00000124614	RPS10	DBA9|S10|eS10	ribosomal protein S10	protein-coding
15876	chr1	151462921	151463180	+	0	NA	Intergenic	AluSg|SINE|Alu	-3556	NM_001194938	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
160214	chr3	23922051	23922150	+	0	NA	3' UTR (NM_001253384, exon 5 of 5)	3' UTR (NM_001253384, exon 5 of 5)	4968	NM_001253383	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
190337	chr5	179632051	179632350	+	0	NA	intron (NM_001364226, intron 1 of 13)	AluYa5|SINE|Alu	2584	NM_001364233	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
104754	chr17	81689351	81689650	+	0	NA	intron (NM_004712, intron 5 of 21)	intron (NM_004712, intron 5 of 21)	-4257	NR_106844	102465471		NR_106844	ENSG00000277784	MIR6786	hsa-mir-6786	microRNA 6786	ncRNA
14849	chr1	146377801	146378330	+	0	NA	Intergenic	AluY|SINE|Alu	1258	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
212987	chr7	130986071	130986830	+	0	NA	intron (NR_109855, intron 2 of 4)	intron (NR_109855, intron 2 of 4)	72986	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
95555	chr17	36755571	36755730	+	0	NA	Intergenic	Intergenic	154067	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
59819	chr13	30410501	30411100	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	11444	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
7752	chr1	36163851	36164150	+	0	NA	intron (NM_001286365, intron 1 of 15)	AluSz6|SINE|Alu	7840	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
18391	chr1	161397851	161397950	+	0	NA	Intergenic	AluSz6|SINE|Alu	-30024	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
117182	chr19	19357901	19358380	+	0	NA	3' UTR (NM_015329, exon 19 of 19)	3' UTR (NM_015329, exon 19 of 19)	-27703	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
136543	chr2	177335001	177335280	+	0	NA	intron (NR_026966, intron 2 of 8)	intron (NR_026966, intron 2 of 8)	-21258	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
183818	chr5	83306771	83306930	+	0	NA	intron (NM_022550, intron 7 of 7)	intron (NM_022550, intron 7 of 7)	-164824	NM_001164097	1462		NM_004385	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
122600	chr19	49765071	49765430	+	0	NA	Intergenic	AluY|SINE|Alu	-1751	NM_130787	160		NM_014203	ENSG00000196961	AP2A1	ADTAA|AP2-ALPHA|CLAPA1	adaptor related protein complex 2 subunit alpha 1	protein-coding
100162	chr17	58619101	58619300	+	0	NA	intron (NM_198393, intron 5 of 32)	intron (NM_198393, intron 5 of 32)	72845	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
139740	chr2	229851151	229851630	+	0	NA	intron (NM_001348327, intron 4 of 41)	LTR12C|LTR|ERV1	70289	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
60186	chr13	40320351	40320450	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-99898	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
103234	chr17	77498471	77498630	+	0	NA	exon (NM_001113492, exon 12 of 12)	exon (NM_001113492, exon 12 of 12)	22915	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
169597	chr3	171001971	171002130	+	0	NA	intron (NM_000340, intron 8 of 10)	intron (NM_000340, intron 8 of 10)	24670	NM_001278658	6514		NM_000340	ENSG00000163581	SLC2A2	GLUT2	solute carrier family 2 member 2	protein-coding
222106	chr8	131804271	131804430	+	0	NA	Intergenic	Intergenic	-99743	NM_001323553	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
153430	chr22	25062051	25063250	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	34676	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
46212	chr11	123653871	123654630	+	0	NA	5' UTR (NM_001040151, exon 1 of 7)	5' UTR (NM_001040151, exon 1 of 7)	374	NM_018400	55800		NM_018400	ENSG00000166257	SCN3B	ATFB16|BRGDA7|HSA243396|SCNB3	sodium voltage-gated channel beta subunit 3	protein-coding
45481	chr11	118604371	118604730	+	0	NA	Intergenic	Intergenic	-1886	NM_015157	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
31417	chr10	95690771	95691130	+	0	NA	intron (NM_015631, intron 3 of 13)	intron (NM_015631, intron 3 of 13)	2977	NM_015631	26123		NM_015631	ENSG00000119977	TCTN3	C10orf61|JBTS18|OFD4|TECT3	tectonic family member 3	protein-coding
118559	chr19	36143901	36144480	+	0	NA	intron (NM_001302633, intron 5 of 9)	AluY|SINE|Alu	3200	NM_001302633	826		NM_001749	ENSG00000126247	CAPNS1	CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1|PPH6	calpain small subunit 1	protein-coding
41489	chr11	66242901	66243300	+	0	NA	intron (NM_018026, intron 23 of 23)	intron (NM_018026, intron 23 of 23)	-14194	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
3199	chr1	13746901	13747100	+	0	NA	intron (NM_001135610, intron 5 of 7)	intron (NM_001135610, intron 5 of 7)	-2415	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
72550	chr15	34370751	34370850	+	0	NA	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-3604	NM_153613	254531		NM_153613	ENSG00000176454	LPCAT4	AGPAT7|AYTL3|LPAAT-eta|LPEAT2|LPLAT10	lysophosphatidylcholine acyltransferase 4	protein-coding
223748	chr8	144512171	144512330	+	0	NA	exon (NM_004260, exon 18 of 21)	exon (NM_004260, exon 18 of 21)	3180	NM_138431	113655		NM_138431	ENSG00000167700	MFSD3	SLC33A2	major facilitator superfamily domain containing 3	protein-coding
35350	chr11	1204901	1205100	+	0	NA	Intergenic	Intergenic	-18066	NM_002458	727897		NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
198266	chr6	99571171	99571730	+	0	NA	Intergenic	AluSg|SINE|Alu	-2636	NM_001013399	892		NM_005190	ENSG00000112237	CCNC	CycC|SRB11|hSRB11	cyclin C	protein-coding
141376	chr2	240698871	240699830	+	0	NA	TTS (NM_198998)	TTS (NM_198998)	7484	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
133039	chr2	112138571	112139730	+	0	NA	intron (NM_153214, intron 1 of 7)	CpG	765	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
104903	chr17	81895171	81895530	+	0	NA	intron (NM_001002249, intron 3 of 3)	(CATTTT)n|Simple_repeat|Simple_repeat	3423	NM_001289416	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
228667	chr9	107294751	107295050	+	0	NA	intron (NM_001244713, intron 1 of 9)	L2a|LINE|L2	10131	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
61023	chr13	48155551	48157330	+	0	NA	Intergenic	Intergenic	-61299	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
203037	chr6	164087301	164087500	+	0	NA	Intergenic	Intergenic	-415916	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
71227	chr14	105170051	105170350	+	0	NA	Intergenic	Intergenic	-1424	NM_145159	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
169411	chr3	160956951	160957050	+	0	NA	intron (NM_001317912, intron 2 of 4)	intron (NM_001317912, intron 2 of 4)	86402	NR_134243	151742		NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
120184	chr19	42267601	42269900	+	0	NA	promoter-TSS (NM_001379482)	promoter-TSS (NM_001379482)	220	NM_001304815	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
56606	chr12	118064321	118064980	+	0	NA	3' UTR (NM_019086, exon 9 of 9)	3' UTR (NM_019086, exon 9 of 9)	-2476	NM_001278557	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
149162	chr21	17810801	17811000	+	0	NA	intron (NM_017447, intron 2 of 4)	intron (NM_017447, intron 2 of 4)	8456	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
103380	chr17	78139971	78141000	+	0	NA	intron (NM_152468, intron 15 of 15)	CpG	-5900	NM_001163075	100141515		NM_001163075	ENSG00000187997	C17orf99	IL-40|UNQ464	chromosome 17 open reading frame 99	protein-coding
104653	chr17	81469151	81469250	+	0	NA	Intergenic	Intergenic	-18012	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
67557	chr14	71322701	71323280	+	0	NA	intron (NM_001354287, intron 2 of 23)	intron (NM_001354287, intron 2 of 23)	2514	NM_015556	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
128533	chr2	60797171	60797430	+	0	NA	3' UTR (NM_022894, exon 22 of 22)	3' UTR (NM_022894, exon 22 of 22)	41032	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
133333	chr2	113904951	113905400	+	0	NA	intron (NM_001277140, intron 1 of 11)	intron (NM_001277140, intron 1 of 11)	-14183	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
83207	chr16	23575151	23575650	+	0	NA	Intergenic	Intergenic	17673	NM_019116	56061		NM_019116	ENSG00000103353	UBFD1	UBPH	ubiquitin family domain containing 1	protein-coding
227285	chr9	89388321	89388780	+	0	NA	intron (NM_001371200, intron 13 of 20)	intron (NM_001371200, intron 13 of 20)	69699	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
145159	chr20	38842501	38843280	+	0	NA	intron (NM_001172735, intron 2 of 9)	L1ME4a|LINE|L1	37193	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
39951	chr11	62557781	62559530	+	0	NA	TTS (NM_001404)	TTS (NM_001404)	1651	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
30339	chr10	77602901	77603100	+	0	NA	intron (NM_001322836, intron 1 of 27)	AmnSINE1|SINE|5S-Deu-L2	34808	NM_001161353	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
55835	chr12	108997121	108997450	+	0	NA	intron (NM_018711, intron 1 of 15)	L1HS|LINE|L1	23783	NM_018711	55530		NM_018711	ENSG00000166111	SVOP	SLC22B4	SV2 related protein	protein-coding
69562	chr14	96795851	96796150	+	0	NA	Intergenic	Arthur1A|DNA|hAT-Tip100	-1382	NM_003384	7443		NM_003384	ENSG00000100749	VRK1	HMNR10|PCH1|PCH1A	VRK serine/threonine kinase 1	protein-coding
87229	chr16	69576101	69576300	+	0	NA	intron (NM_138713, intron 2 of 14)	AluY|SINE|Alu	10234	NM_173215	10725		NM_006599	ENSG00000102908	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T cells 5	protein-coding
198298	chr6	100348121	100348380	+	0	NA	Intergenic	Intergenic	116206	NM_001374769	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
17274	chr1	156419771	156421090	+	0	NA	promoter-TSS (NR_029691)	promoter-TSS (NR_029691)	-1	NR_029691	407046		NR_029691	ENSG00000207933	MIR9-1	MIRN9-1|hsa-mir-9-1|miRNA9-1|mir-9-1	microRNA 9-1	ncRNA
76809	chr15	77036851	77036950	+	0	NA	intron (NR_135552, intron 11 of 11)	intron (NR_135552, intron 11 of 11)	34209	NM_005724	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
115744	chr19	16289551	16289850	+	0	NA	Intergenic	Intergenic	-35126	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
57748	chr12	122952051	122952780	+	0	NA	intron (NM_203444, intron 2 of 11)	intron (NM_203444, intron 2 of 11)	14048	NM_001243014	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
21092	chr1	203329421	203329930	+	0	NA	Intergenic	Intergenic	21447	NR_103757	2331		NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding
46724	chr11	128889771	128889930	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	-1506	NM_001354169	3762		NM_000890	ENSG00000120457	KCNJ5	CIR|GIRK4|KATP1|KIR3.4|LQT13	potassium inwardly rectifying channel subfamily J member 5	protein-coding
210828	chr7	100895501	100896250	+	0	NA	promoter-TSS (NM_000665)	promoter-TSS (NM_000665)	13	NM_001367915	43		NM_000665	ENSG00000087085	ACHE	ACEE|ARACHE|N-ACHE|YT	acetylcholinesterase (Yt blood group)	protein-coding
38370	chr11	44621201	44621630	+	0	NA	Intergenic	Intergenic	55752	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
137851	chr2	200811021	200812950	+	0	NA	promoter-TSS (NM_001321693)	promoter-TSS (NM_001321693)	75	NM_001321693	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
98575	chr17	47719451	47720130	+	0	NA	Intergenic	Intergenic	-13446	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
43900	chr11	88544251	88544750	+	0	NA	intron (NM_001143831, intron 8 of 9)	intron (NM_001143831, intron 8 of 9)	39924	NR_049724	100873989		NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
125466	chr2	12302051	12302580	+	0	NA	intron (NR_110196, intron 3 of 5)	MER91C|DNA|hAT-Tip100	103185	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
111426	chr19	3787521	3787780	+	0	NA	intron (NM_002378, intron 2 of 13)	AluSz|SINE|Alu	-1269	NM_139354	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
36746	chr11	9312251	9313080	+	0	NA	intron (NM_001165030, intron 1 of 2)	AluY|SINE|Alu	1928	NM_015012	440026		NM_015012	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
171167	chr3	195637021	195637680	+	0	NA	Intergenic	Intergenic	14809	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
18856	chr1	167744251	167744350	+	0	NA	intron (NM_001146191, intron 1 of 2)	intron (NM_001146191, intron 1 of 2)	22318	NM_024569	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
69291	chr14	93085321	93085850	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	18133	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
204302	chr7	2680371	2681050	+	0	NA	intron (NM_001384742, intron 1 of 5)	intron (NM_001384742, intron 1 of 5)	1188	NM_001384742	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
156862	chr22	42075471	42075830	+	0	NA	5' UTR (NM_001002034, exon 2 of 3)	5' UTR (NM_001002034, exon 2 of 3)	1402	NM_001002034	150368		NM_001002034	ENSG00000177096	PHETA2	FAM109B|IPIP27B|Ses2	PH domain containing endocytic trafficking adaptor 2	protein-coding
57302	chr12	121657121	121657750	+	0	NA	intron (NM_173855, intron 2 of 5)	LTR8|LTR|ERV1	12219	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
213494	chr7	139054771	139054930	+	0	NA	intron (NM_020119, intron 10 of 12)	AluSx|SINE|Alu	-10693	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
221835	chr8	128144971	128145130	+	0	NA	Intergenic	Intergenic	-5066	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
162306	chr3	47418101	47418580	+	0	NA	exon (NM_012235, exon 15 of 23)	exon (NM_012235, exon 15 of 23)	37319	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
203210	chr6	167829501	167829700	+	0	NA	intron (NM_001291964, intron 1 of 32)	intron (NM_001291964, intron 1 of 32)	1965	NM_001291964	4301		NM_005936	ENSG00000130396	AFDN	AF6|MLL-AF6|MLLT4|l-afadin	afadin, adherens junction formation factor	protein-coding
63110	chr13	113314601	113315000	+	0	NA	intron (NM_005561, intron 4 of 8)	intron (NM_005561, intron 4 of 8)	17561	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
137965	chr2	201184001	201184600	+	0	NA	intron (NM_001230, intron 1 of 7)	intron (NM_001230, intron 1 of 7)	1159	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
175945	chr4	80508571	80508930	+	0	NA	intron (NM_001206997, intron 2 of 6)	AluJb|SINE|Alu	173020	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
130802	chr2	86945901	86946350	+	0	NA	intron (NM_001382344, intron 1 of 22)	FLAM_A|SINE|Alu	4007	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
164585	chr3	66038001	66038200	+	0	NA	exon (NM_004742, exon 1 of 23)	exon (NM_004742, exon 1 of 23)	818	NM_001365903	9223		NM_004742	ENSG00000151276	MAGI1	AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|MAGI-1b|Magi1d|TNRC19|WWP3	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
136270	chr2	174681971	174684280	+	0	NA	promoter-TSS (NM_001375836)	promoter-TSS (NM_001375836)	-212	NM_001375835	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
57971	chr12	123934851	123935150	+	0	NA	TTS (NM_001304961)	TTS (NM_001304961)	37059	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
194765	chr6	34069771	34069930	+	0	NA	intron (NM_001282847, intron 2 of 9)	L2b|LINE|L2	36117	NM_001256813	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
91096	chr17	3655851	3656350	+	0	NA	intron (NM_001374494, intron 6 of 10)	intron (NM_001374494, intron 6 of 10)	12478	NM_014604	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
115643	chr19	16112851	16113250	+	0	NA	intron (NM_005370, intron 1 of 7)	intron (NM_005370, intron 1 of 7)	1161	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
90798	chr17	2195921	2196180	+	0	NA	intron (NM_001256827, intron 3 of 11)	L1MD2|LINE|L1	-36628	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
176090	chr4	82899201	82899480	+	0	NA	intron (NR_034076, intron 2 of 4)	L1MB8|LINE|L1	-1115	NR_132760	106633809		NR_132760		SNORD144	SNORA97|ZL6	small nucleolar RNA, C/D box 144	snoRNA
79616	chr16	1097271	1097850	+	0	NA	Intergenic	Intergenic	-1316	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
28614	chr10	58268701	58270050	+	0	NA	intron (NM_018464, intron 1 of 2)	CpG-2934	213	NM_018464	55847		NM_018464	ENSG00000122873	CISD1	C10orf70|MDS029|ZCD1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding
69766	chr14	99166151	99166250	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	105997	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
70869	chr14	103748151	103748810	+	0	NA	intron (NM_015316, intron 8 of 16)	intron (NM_015316, intron 8 of 16)	32670	NM_024071	79038		NM_024071	ENSG00000100711	ZFYVE21	HCVP7TP1|ZF21	zinc finger FYVE-type containing 21	protein-coding
173237	chr4	6926751	6928180	+	0	NA	intron (NM_020773, intron 2 of 13)	intron (NM_020773, intron 2 of 13)	17639	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
13272	chr1	112773751	112774050	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	54995	NR_169586	284467		NM_182759	ENSG00000184599	TAFA3	FAM19A3|TAFA-3	TAFA chemokine like family member 3	protein-coding
164359	chr3	58085071	58085630	+	0	NA	intron (NM_001164319, intron 4 of 44)	intron (NM_001164319, intron 4 of 44)	76928	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
137300	chr2	195648501	195649100	+	0	NA	Intergenic	MIR|SINE|MIR	-8158	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
132488	chr2	105968301	105968500	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-97288	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
123086	chr19	51398051	51398380	+	0	NA	Intergenic	HERVK14-int|LTR|ERVK	-7624	NR_126530	147646		NM_001193623	ENSG00000262874	C19orf84	-	chromosome 19 open reading frame 84	protein-coding
196774	chr6	45572901	45573300	+	0	NA	Intergenic	Intergenic	150825	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
203128	chr6	166775151	166775780	+	0	NA	intron (NM_001318936, intron 2 of 22)	intron (NM_001318936, intron 2 of 22)	87060	NM_001006932	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
28775	chr10	62050701	62051680	+	0	NA	intron (NM_001244638, intron 2 of 6)	intron (NM_001244638, intron 2 of 6)	1833	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
54880	chr12	95789651	95790950	+	0	NA	promoter-TSS (NM_001329702)	promoter-TSS (NM_001329702)	-105	NM_001329702	59277		NM_021229	ENSG00000074527	NTN4	PRO3091	netrin 4	protein-coding
38529	chr11	45897701	45898080	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	9381	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
125775	chr2	23658421	23658680	+	0	NA	intron (NM_052920, intron 5 of 13)	intron (NM_052920, intron 5 of 13)	268573	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
31650	chr10	97402501	97402780	+	0	NA	Intergenic	AluSx|SINE|Alu	-1270	NM_001145114	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
174757	chr4	47383871	47384050	+	0	NA	intron (NM_000812, intron 5 of 8)	intron (NM_000812, intron 5 of 8)	79742	NM_017845	54951		NM_017845	ENSG00000169019	COMMD8	-	COMM domain containing 8	protein-coding
211285	chr7	103074351	103075730	+	0	NA	promoter-TSS (NM_145032)	promoter-TSS (NM_145032)	-100	NM_001161009	83787		NM_031905	ENSG00000170632	ARMC10	PNAS-112|PNAS112|PSEC0198|SVH	armadillo repeat containing 10	protein-coding
52565	chr12	56157271	56159700	+	0	NA	TTS (NM_002475)	TTS (NM_002475)	126	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
95448	chr17	36143671	36144030	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	32728	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
214133	chr7	144291601	144293030	+	0	NA	intron (NR_126022, intron 3 of 4).3	intron (NR_126022, intron 3 of 4).3	-6312	NR_033942	728377		NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor 34, pseudogene	pseudo
194476	chr6	33211271	33212380	+	0	NA	exon (NM_002931, exon 6 of 7).4	exon (NM_002931, exon 6 of 7).4	3325	NM_002931	6015		NM_002931	ENSG00000204227	RING1	RING1A|RNF1	ring finger protein 1	protein-coding
191155	chr6	4774521	4777980	+	0	NA	promoter-TSS (NM_001368127)	promoter-TSS (NM_001368127)	-154	NM_001368127	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
208803	chr7	73621121	73621380	+	0	NA	intron (NR_134541, intron 1 of 15)	L3|LINE|CR1	3272	NM_032953	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
146537	chr20	49955551	49955950	+	0	NA	Intergenic	AluJb|SINE|Alu	19353	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
132615	chr2	108609901	108610100	+	0	NA	intron (NM_001193482, intron 1 of 9)	AluY|SINE|Alu	2853	NM_001193482	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
163563	chr3	51819721	51819980	+	0	NA	TTS (NR_038214)	TTS (NR_038214)	2247	NR_038214	100506840		NR_038213	ENSG00000293437	IQCF4P	IQCF4	IQ motif containing F4, pseudogene	pseudo
205888	chr7	25112171	25112330	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	13010	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
131804	chr2	98568871	98569730	+	0	NA	intron (NM_001351424, intron 23 of 25)	L2c|LINE|L2	39212	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
20598	chr1	198764471	198765000	+	0	NA	Intergenic	Intergenic	94247	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
41037	chr11	65450951	65451430	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-4096	NR_160548	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
218215	chr8	42022571	42023230	+	0	NA	intron (NM_001305878, intron 2 of 13)	Tigger3b|DNA|TcMar-Tigger	-28850	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
198032	chr6	90159701	90160300	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	136843	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
52590	chr12	56188501	56191200	+	0	NA	promoter-TSS (NM_001330288)	promoter-TSS (NM_001330288)	-367	NM_139067	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
193783	chr6	31389851	31390180	+	0	NA	Intergenic	Intergenic	8493	NR_148223	101929072		NR_148222		MICA-AS1	-	MICA antisense RNA 1	ncRNA
160857	chr3	33131451	33132030	+	0	NA	intron (NM_006371, intron 4 of 6)	intron (NM_006371, intron 4 of 6)	17726	NM_006371	10491		NM_006371	ENSG00000170275	CRTAP	CASP|LEPREL3|OI7|P3H5	cartilage associated protein	protein-coding
59484	chr13	26382601	26383000	+	0	NA	intron (NM_001346501, intron 4 of 11)	intron (NM_001346501, intron 4 of 11)	128671	NM_001318368	1024		NM_001260	ENSG00000132964	CDK8	IDDHBA|K35	cyclin dependent kinase 8	protein-coding
101505	chr17	67715951	67716530	+	0	NA	Intergenic	L2a|LINE|L2	-1593	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
1967	chr1	6592471	6592930	+	0	NA	3' UTR (NM_001324309, exon 4 of 4)	3' UTR (NM_001324309, exon 4 of 4)	10169	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
4744	chr1	23436601	23437280	+	0	NA	exon (NM_001143778, exon 14 of 24)	exon (NM_001143778, exon 14 of 24)	-12192	NM_003196	6920		NM_003196	ENSG00000204219	TCEA3	TFIIS|TFIIS.H	transcription elongation factor A3	protein-coding
41814	chr11	67006371	67006980	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-16118	NM_001177880	91683		NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
196673	chr6	44475621	44476130	+	0	NA	Intergenic	Intergenic	40234	NR_039785	100616352		NR_039785	ENSG00000266619	MIR4642	-	microRNA 4642	ncRNA
36542	chr11	6604301	6605130	+	0	NA	intron (NM_001278442, intron 2 of 11)	L2c|LINE|L2	941	NM_001014795	3611		NM_004517	ENSG00000166333	ILK	HEL-S-28|ILK-1|ILK-2|P59|p59ILK	integrin linked kinase	protein-coding
210	chr1	817171	818100	+	0	NA	non-coding (NR_103536, exon 1 of 2)	non-coding (NR_103536, exon 1 of 2)	264	NR_103536	400728		NM_207464	ENSG00000177757	FAM87B	-	family with sequence similarity 87 member B	ncRNA
87905	chr16	78897371	78897880	+	0	NA	intron (NM_016373, intron 8 of 8)	L1ME2|LINE|L1	703112	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
202785	chr6	159095671	159096050	+	0	NA	Intergenic	Intergenic	-50708	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
127426	chr2	42134751	42134850	+	0	NA	Intergenic	AluJb|SINE|Alu	-34553	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
90433	chr17	1356751	1357050	+	0	NA	intron (NR_024058, intron 5 of 6)	intron (NR_024058, intron 5 of 6)	43322	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
12297	chr1	100894721	100895400	+	0	NA	promoter-TSS (NM_001033025)	promoter-TSS (NM_001033025)	119	NM_001261441	2135		NM_001439	ENSG00000162694	EXTL2	EXTR2	exostosin like glycosyltransferase 2	protein-coding
122878	chr19	50506571	50507030	+	0	NA	intron (NM_001270641, intron 2 of 3)	(CACC)n|Simple_repeat|Simple_repeat	4391	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
193684	chr6	31094251	31095280	+	0	NA	Intergenic	Intergenic	17810	NM_014070	29113		NM_014070	ENSG00000204542	C6orf15	STG	chromosome 6 open reading frame 15	protein-coding
217835	chr8	37696771	37697430	+	0	NA	intron (NM_025069, intron 1 of 1)	CpG-27159	1318	NM_025069	80139		NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
186898	chr5	139572371	139572880	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	11286	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
135925	chr2	171811171	171811330	+	0	NA	intron (NR_047549, intron 10 of 16)	intron (NR_047549, intron 10 of 16)	82994	NM_003705	8604		NM_003705	ENSG00000115840	SLC25A12	AGC1|ARALAR|DEE39|EIEE39	solute carrier family 25 member 12	protein-coding
96687	chr17	41324071	41324650	+	0	NA	Intergenic	Intergenic	-8650	NM_031964	83902		NM_031964	ENSG00000186860	KRTAP17-1	KAP17.1|KRTAP16.1|KRTAP17.1	keratin associated protein 17-1	protein-coding
18699	chr1	167434621	167436030	+	0	NA	intron (NM_198053, intron 5 of 7)	(CCCT)n|Simple_repeat|Simple_repeat	83204	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
169579	chr3	170584651	170584930	+	0	NA	intron (NM_020949, intron 1 of 7)	intron (NM_020949, intron 1 of 7)	1285	NM_020949	57709		NM_020949	ENSG00000013293	SLC7A14	PPP1R142	solute carrier family 7 member 14	protein-coding
116430	chr19	18018171	18018630	+	0	NA	Intergenic	AluY|SINE|Alu	10230	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
36054	chr11	2943421	2944480	+	0	NA	TTS (NM_001369388).2	TTS (NM_001369388).2	-14530	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
175671	chr4	76982551	76983400	+	0	NA	intron (NM_018243, intron 1 of 9)	intron (NM_018243, intron 1 of 9)	33223	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
53304	chr12	64543721	64543980	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-66645	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
44554	chr11	108171201	108171630	+	0	NA	intron (NM_001321307, intron 13 of 17)	AluSx1|SINE|Alu	49848	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
93390	chr17	18274651	18274950	+	0	NA	3' UTR (NM_004618, exon 19 of 19)	3' UTR (NM_004618, exon 19 of 19)	13690	NM_148886	125170		NM_139162	ENSG00000177427	MIEF2	COXPD49|D3B|MID49|SMCR7	mitochondrial elongation factor 2	protein-coding
21104	chr1	203499921	203500380	+	0	NA	intron (NM_014359, intron 5 of 7)	(CCA)n|Simple_repeat|Simple_repeat	5997	NM_014359	26254		NM_014359	ENSG00000188770	OPTC	OPT	opticin	protein-coding
151395	chr21	45981101	45982830	+	0	NA	intron (NM_001848, intron 1 of 34)	CpG	195	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
111315	chr19	3615971	3616130	+	0	NA	intron (NM_021231, intron 6 of 10)	intron (NM_021231, intron 6 of 10)	8803	NR_038865	404665		NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	ncRNA
83719	chr16	28509321	28509580	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2616	NM_145659	246778		NM_145659	ENSG00000197272	IL27	IL-27|IL-27A|IL27A|IL27p28|IL30|p28	interleukin 27	protein-coding
128112	chr2	48146071	48146230	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-168149	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
102111	chr17	75010971	75011400	+	0	NA	Intergenic	Intergenic	-1485	NM_001303265	3396		NM_001545	ENSG00000167862	MRPL58	DS-1|DS1|ICT1|MRP-L58|mL62	mitochondrial ribosomal protein L58	protein-coding
143223	chr20	24969271	24970050	+	0	NA	exon (NM_020531, exon 7 of 9)	exon (NM_020531, exon 7 of 9)	20391	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
175358	chr4	69830851	69831150	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	29145	NM_005420	6783		NM_005420	ENSG00000109193	SULT1E1	EST|EST-1|ST1E1|STE	sulfotransferase family 1E member 1	protein-coding
113862	chr19	10652151	10655450	+	0	NA	promoter-TSS (NM_017620)	promoter-TSS (NM_017620)	72	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
143347	chr20	25857001	25857450	+	0	NA	Intergenic	Intergenic	-3204	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
214716	chr7	151010521	151011600	+	0	NA	intron (NM_000603, intron 23 of 26)	intron (NM_000603, intron 23 of 26)	13439	NM_001317056	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
7581	chr1	35179171	35179530	+	0	NA	intron (NR_136702, intron 9 of 11)	intron (NR_136702, intron 9 of 11)	13795	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
217769	chr8	32927851	32928230	+	0	NA	Intergenic	LTR33|LTR|ERVL	206205	NM_001322197	3084		NM_004495	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
68145	chr14	75542341	75544250	+	0	NA	intron (NM_006399, intron 2 of 2)	intron (NM_006399, intron 2 of 2)	20826	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
13625	chr1	116410051	116410350	+	0	NA	intron (NR_024125, intron 1 of 2)	intron (NR_024125, intron 1 of 2)	8359	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
130787	chr2	86851351	86852050	+	0	NA	intron (NM_172213, intron 3 of 5)	intron (NM_172213, intron 3 of 5)	-10125	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
200789	chr6	137887101	137887430	+	0	NA	Intergenic	L1PA7|LINE|L1	-19032	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
195521	chr6	37239921	37240490	+	0	NA	intron (NM_145316, intron 1 of 3)	MLT1F2|LTR|ERVL-MaLR	17394	NM_001371555	221468		NM_145316	ENSG00000172738	TMEM217	C6orf128|dJ355M6.2	transmembrane protein 217	protein-coding
206290	chr7	30027901	30030500	+	0	NA	intron (NM_032639, intron 1 of 12)	intron (NM_032639, intron 1 of 12)	788	NM_001350973	84725		NM_032639	ENSG00000106086	PLEKHA8	FAPP2	pleckstrin homology domain containing A8	protein-coding
8841	chr1	43285501	43285700	+	0	NA	promoter-TSS (NM_001164829)	promoter-TSS (NM_001164829)	-19	NM_001164829	149466		NM_182517	ENSG00000253313	C1orf210	TEMP	chromosome 1 open reading frame 210	protein-coding
62088	chr13	94558501	94558980	+	0	NA	Intergenic	MER51A|LTR|ERV1	-9334	NM_001322184	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
93365	chr17	18239651	18239950	+	0	NA	intron (NM_004140, intron 16 of 22)	intron (NM_004140, intron 16 of 22)	14165	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
121182	chr19	46492551	46492650	+	0	NA	3' UTR (NM_020709, exon 1 of 1)	3' UTR (NM_020709, exon 1 of 1)	3267	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
216414	chr8	18919001	18919400	+	0	NA	intron (NM_015310, intron 2 of 15)	L3|LINE|CR1	-32143	NM_001362819	23362		NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
185001	chr5	115178221	115178500	+	0	NA	intron (NM_001017398, intron 1 of 1)	intron (NM_001017398, intron 1 of 1)	1934	NM_001300752	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
176523	chr4	95289151	95289250	+	0	NA	intron (NM_003728, intron 3 of 15)	intron (NM_003728, intron 3 of 15)	197709	NM_001256794	658		NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMD3|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
118385	chr19	35728771	35729530	+	0	NA	intron (NM_014727, intron 21 of 36)	intron (NM_014727, intron 21 of 36)	11147	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
44042	chr11	95156201	95156680	+	0	NA	intron (NR_110303, intron 1 of 2)	intron (NR_110303, intron 1 of 2)	5901	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
88997	chr16	87953201	87954100	+	0	NA	intron (NM_001384920, intron 2 of 13)	intron (NM_001384920, intron 2 of 13)	2216	NM_001384935	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
179720	chr5	91871	92430	+	0	NA	promoter-TSS (NM_052909)	promoter-TSS (NM_052909)	-18	NM_052909	153478		NM_052909	ENSG00000153404	PLEKHG4B	ARHGEF48	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
39112	chr11	48058021	48058730	+	0	NA	intron (NM_002843, intron 1 of 24)	AluJr|SINE|Alu	-38407	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
190441	chr5	179843951	179844450	+	0	NA	exon (NM_016175, exon 4 of 7)	exon (NM_016175, exon 4 of 7)	14617	NM_016175	51149		NM_016175	ENSG00000161010	MRNIP	C5orf45	MRN complex interacting protein	protein-coding
27387	chr10	31133371	31134550	+	0	NA	Intergenic	CpG	-53923	NR_134478	101929352		NR_134478		LINC02664	-	long intergenic non-protein coding RNA 2664	ncRNA
185334	chr5	126811151	126812330	+	0	NA	intron (NR_134488, intron 4 of 11)	intron (NR_134488, intron 4 of 11)	34604	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
186866	chr5	139480351	139480450	+	0	NA	intron (NM_198282, intron 5 of 7)	AluSx1|SINE|Alu	2358	NM_001367258	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
173010	chr4	4386801	4387290	+	0	NA	promoter-TSS (NM_001382227)	promoter-TSS (NM_001382227)	-57	NR_167932	27065		NM_014392	ENSG00000168824	NSG1	D4S234|D4S234E|NEEP21|P21	neuronal vesicle trafficking associated 1	protein-coding
157403	chr22	44854021	44854280	+	0	NA	intron (NM_001198726, intron 10 of 10)	MER34B-int|LTR|ERV1	101575	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
48265	chr12	8643151	8643530	+	0	NA	Intergenic	AluYc3|SINE|Alu	19486	NM_003480	8076		NM_003480	ENSG00000197614	MFAP5	AAT9|MAGP-2|MAGP2|MFAP-5|MP25	microfibril associated protein 5	protein-coding
92504	chr17	8887051	8887150	+	0	NA	exon (NM_014308, exon 12 of 19)	exon (NM_014308, exon 12 of 19)	-19423	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
237011	chrX	102478851	102478950	+	0	NA	Intergenic	Intergenic	-7088	NM_001277423	100996648		NM_001277423	ENSG00000215029	TCP11X2	-	t-complex 11 family, X-linked 2	protein-coding
73243	chr15	41772501	41773150	+	0	NA	Intergenic	Intergenic	-1659	NR_049761	23005		NM_014994	ENSG00000137802	MAPKBP1	JNKBP-1|JNKBP1|NPHP20	mitogen-activated protein kinase binding protein 1	protein-coding
168282	chr3	141491921	141492180	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	5023	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
199244	chr6	111834321	111835030	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	38396	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
63047	chr13	113032951	113033580	+	0	NA	intron (NM_001112732, intron 3 of 29)	CpG	-11381	NM_001366645	23263		NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
50666	chr12	48824151	48824850	+	0	NA	intron (NM_001206915, intron 3 of 11)	intron (NM_001206915, intron 3 of 11)	6004	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
30631	chr10	80443021	80443280	+	0	NA	Intergenic	Intergenic	-11160	NM_001351267	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
168913	chr3	152338201	152338630	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	2575	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
164053	chr3	53753351	53754050	+	0	NA	intron (NM_001128839, intron 29 of 45)	intron (NM_001128839, intron 29 of 45)	92719	NM_018397	55349		NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
33560	chr10	119322201	119322400	+	0	NA	intron (NM_005308, intron 1 of 15)	MER20|DNA|hAT-Charlie	-55672	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
224159	chr9	4970371	4970530	+	0	NA	Intergenic	AluSz6|SINE|Alu	-14636	NM_001322195	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
165455	chr3	98574421	98574680	+	0	NA	Intergenic	Intergenic	19061	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
29429	chr10	70322621	70323500	+	0	NA	intron (NR_103468, intron 2 of 2)	MIRc|SINE|MIR	-39056	NM_022146	64106		NM_022146	ENSG00000148734	NPFFR1	GPR147|NPFF1|NPFF1R1|OT7T022	neuropeptide FF receptor 1	protein-coding
200617	chr6	136779351	136779850	+	0	NA	intron (NM_005923, intron 1 of 29)	intron (NM_005923, intron 1 of 29)	-4447	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
130619	chr2	86016871	86017430	+	0	NA	Intergenic	Intergenic	88736	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
48290	chr12	8951801	8952400	+	0	NA	intron (NR_137427, intron 1 of 2)	intron (NR_137427, intron 1 of 2)	2056	NM_001329103	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
161212	chr3	39175571	39175730	+	0	NA	Intergenic	AluSx|SINE|Alu	16945	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
40942	chr11	65313351	65313650	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1366	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
101164	chr17	65106371	65106680	+	0	NA	intron (NR_110801, intron 2 of 2)	intron (NR_110801, intron 2 of 2)	5713	NR_110801	100507002		NR_110801		LOC100507002	-	uncharacterized LOC100507002	ncRNA
161983	chr3	46353771	46354780	+	0	NA	intron (NM_001123396, intron 1 of 1)	intron (NM_001123396, intron 1 of 1)	164	NM_001123396	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
84251	chr16	30009751	30009850	+	0	NA	intron (NR_104089, intron 2 of 10)	intron (NR_104089, intron 2 of 10)	1227	NM_003586	8448		NM_003586	ENSG00000149927	DOC2A	Doc2	double C2 domain alpha	protein-coding
185280	chr5	126422821	126423880	+	0	NA	promoter-TSS (NM_001349541)	promoter-TSS (NM_001349541)	-59	NR_146197	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
33595	chr10	119519171	119519900	+	0	NA	intron (NM_002925, intron 3 of 4)	intron (NM_002925, intron 3 of 4)	16998	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
238163	chrX	136857451	136857950	+	0	NA	Intergenic	AluSx1|SINE|Alu	21571	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
25755	chr10	9362771	9362930	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-67257	NR_120635	101928272		NR_120635		LOC101928272	-	uncharacterized LOC101928272	ncRNA
160678	chr3	32239901	32240400	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	1470	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
98069	chr17	45487521	45488130	+	0	NA	intron (NM_014798, intron 1 of 11).3	intron (NM_014798, intron 1 of 11).3	2896	NR_027774	9842		NM_014798	ENSG00000225190	PLEKHM1	AP162|B2|OPTA3|OPTB6	pleckstrin homology and RUN domain containing M1	protein-coding
209322	chr7	76164451	76164900	+	0	NA	Intergenic	Intergenic	-37221	NM_001291831	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
169546	chr3	170177621	170178050	+	0	NA	intron (NM_001308116, intron 2 of 14)	AluJb|SINE|Alu	3898	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
134611	chr2	144385551	144385650	+	0	NA	3' UTR (NM_001171653, exon 9 of 9)	3' UTR (NM_001171653, exon 9 of 9)	-52531	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
54133	chr12	76529701	76530430	+	0	NA	intron (NM_001003712, intron 1 of 22)	AluJr4|SINE|Alu	29706	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
228960	chr9	113478971	113479530	+	0	NA	intron (NM_017790, intron 1 of 17)	L3|LINE|CR1	15523	NM_001282923	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
236638	chrX	74613101	74613500	+	0	NA	intron (NM_183353, intron 1 of 4)	intron (NM_183353, intron 1 of 4)	1324	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
77282	chr15	82139721	82140050	+	0	NA	intron (NM_001322844, intron 17 of 18)	L1ME3G|LINE|L1	51291	NR_120367	101929690		NR_120367	ENSG00000259518	LINC01583	-	long intergenic non-protein coding RNA 1583	ncRNA
43402	chr11	77146171	77146730	+	0	NA	intron (NM_001369365, intron 4 of 49)	intron (NM_001369365, intron 4 of 49)	18204	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
226329	chr9	69168501	69169130	+	0	NA	intron (NM_001369870, intron 2 of 23)	AluSq2|SINE|Alu	-5240	NM_201629	9414		NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|FHCA1|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
84771	chr16	30991871	30992030	+	0	NA	3' UTR (NM_052874, exon 10 of 10)	3' UTR (NM_052874, exon 10 of 10)	6743	NM_001142778	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
80048	chr16	1966701	1967150	+	0	NA	promoter-TSS (NM_001348711)	promoter-TSS (NM_001348711)	69	NM_174903	146310		NM_174903	ENSG00000179580	RNF151	-	ring finger protein 151	protein-coding
81746	chr16	11370621	11371130	+	0	NA	Intergenic	MIRb|SINE|MIR	25416	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
25275	chr10	6139751	6139850	+	0	NA	Intergenic	Intergenic	-5121	NR_136554	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
230066	chr9	127438871	127439030	+	0	NA	intron (NM_001322260, intron 5 of 5)	AluSx|SINE|Alu	9687	NR_002449	26783		NR_002449	ENSG00000201302	SNORA65	RNU65|U65	small nucleolar RNA, H/ACA box 65	snoRNA
179173	chr4	170138651	170138900	+	0	NA	Intergenic	Intergenic	-48388	NM_001286683	51166		NM_016228	ENSG00000109576	AADAT	KAT2|KATII|KYAT2	aminoadipate aminotransferase	protein-coding
166994	chr3	125920671	125921030	+	0	NA	non-coding (NR_024250, exon 3 of 5)	non-coding (NR_024250, exon 3 of 5)	4249	NR_024250	100125556		NR_024250	ENSG00000291071	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
138001	chr2	201259571	201259730	+	0	NA	promoter-TSS (NM_001372051)	promoter-TSS (NM_001372051)	-886	NM_001372051	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
210104	chr7	97873601	97874000	+	0	NA	intron (NM_001352496, intron 1 of 13)	intron (NM_001352496, intron 1 of 13)	-1258	NM_183356	440		NM_001673	ENSG00000070669	ASNS	ASNSD|TS11	asparagine synthetase (glutamine-hydrolyzing)	protein-coding
171148	chr3	195587901	195588380	+	0	NA	Intergenic	L2a|LINE|L2	-4200	NM_001647	347		NM_001647	ENSG00000189058	APOD	-	apolipoprotein D	protein-coding
220151	chr8	94948251	94948550	+	0	NA	intron (NR_148905, intron 2 of 5)	MIR|SINE|MIR	978	NM_001135733	94241		NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
123534	chr19	54342851	54342950	+	0	NA	Intergenic	AluY|SINE|Alu	-3738	NM_012276	23547		NM_012276	ENSG00000239961	LILRA4	CD85g|ILT7	leukocyte immunoglobulin like receptor A4	protein-coding
138334	chr2	203823301	203823500	+	0	NA	Intergenic	Intergenic	-44371	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
22513	chr1	221795501	221795700	+	0	NA	Intergenic	MIRb|SINE|MIR	45066	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
201333	chr6	144468601	144469500	+	0	NA	intron (NM_007124, intron 22 of 73)	intron (NM_007124, intron 22 of 73)	63395	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
212569	chr7	128892951	128893050	+	0	NA	exon (NM_001366122, exon 14 of 40)	exon (NM_001366122, exon 14 of 40)	17709	NM_001366122	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
27189	chr10	28558951	28559500	+	0	NA	intron (NM_100486, intron 3 of 12)	L2a|LINE|L2	26107	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
143841	chr20	32521451	32522100	+	0	NA	intron (NM_001256798, intron 2 of 10)	intron (NM_001256798, intron 2 of 10)	11816	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
70520	chr14	102318021	102318300	+	0	NA	intron (NM_001385074, intron 1 of 7)	intron (NM_001385074, intron 1 of 7)	654	NM_001385070	55778		NM_018335	ENSG00000022976	ZNF839	C14orf131	zinc finger protein 839	protein-coding
170937	chr3	194321851	194322150	+	0	NA	Intergenic	Intergenic	-9196	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
65693	chr14	52735821	52736350	+	0	NA	intron (NM_001130701, intron 2 of 11)	L2b|LINE|L2	5919	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
218493	chr8	52168971	52169130	+	0	NA	intron (NM_001352876, intron 9 of 23)	intron (NM_001352876, intron 9 of 23)	-25312	NR_134310	101929341		NR_134310	ENSG00000253551	LOC101929341	-	uncharacterized LOC101929341	ncRNA
38860	chr11	47338201	47338400	+	0	NA	intron (NM_000256, intron 22 of 33)	intron (NM_000256, intron 22 of 33)	14402	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
194449	chr6	33170551	33171080	+	0	NA	exon (NM_080679, exon 43 of 63).6	exon (NM_080679, exon 43 of 63).6	21652	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
49382	chr12	22416971	22417530	+	0	NA	Intergenic	Intergenic	-82536	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
6217	chr1	27489711	27490950	+	0	NA	promoter-TSS (NM_001201404)	promoter-TSS (NM_001201404)	-163	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
4419	chr1	21239121	21239380	+	0	NA	intron (NM_001397, intron 10 of 18)	MER91A|DNA|hAT-Tip100	40365	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
122657	chr19	49861351	49862030	+	0	NA	TTS (NM_001305105)	TTS (NM_001305105)	-2401	NR_110730	101928378		NR_110730		PTOV1-AS2	-	PTOV1 antisense RNA 2	ncRNA
131210	chr2	95055801	95056300	+	0	NA	Intergenic	Intergenic	30342	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
49518	chr12	25384421	25387100	+	0	NA	Intergenic	Intergenic	-134831	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
212680	chr7	129618451	129618550	+	0	NA	intron (NM_005011, intron 1 of 10)	AluJr|SINE|Alu	6780	NM_001293164	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
84948	chr16	31357901	31358680	+	0	NA	intron (NM_000887, intron 5 of 29)	intron (NM_000887, intron 5 of 29)	3114	NM_000887	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
85033	chr16	31709871	31710180	+	0	NA	Intergenic	Intergenic	-3204	NM_001130913	124411		NM_001004300	ENSG00000197302	KRBOX5	ZNF720	KRAB box domain containing 5	protein-coding
227102	chr9	85741021	85742880	+	0	NA	promoter-TSS (NM_001286715)	promoter-TSS (NM_001286715)	4	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
190712	chr6	259651	260300	+	0	NA	Intergenic	Intergenic	-32082	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
112186	chr19	5667521	5668400	+	0	NA	intron (NM_001320571, intron 18 of 18)	intron (NM_001320571, intron 18 of 18)	12278	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
204781	chr7	5613751	5614050	+	0	NA	Intergenic	Intergenic	21084	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
153375	chr22	24525251	24525950	+	0	NA	intron (NM_016327, intron 9 of 9)	intron (NM_016327, intron 9 of 9)	29538	NM_001284257	83606		NM_031444	ENSG00000138867	GUCD1	C22orf13|LLN4	guanylyl cyclase domain containing 1	protein-coding
138280	chr2	203704071	203704670	+	0	NA	Intergenic	Intergenic	-2105	NM_001243078	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
38895	chr11	47407201	47410500	+	0	NA	intron (NM_001330245, intron 1 of 9)	(TC)n|Simple_repeat|Simple_repeat	260	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
148409	chr20	63945251	63945880	+	0	NA	intron (NR_148442, intron 5 of 15)	intron (NR_148442, intron 5 of 15)	-2839	NR_030377	693232		NR_030377	ENSG00000207554	MIR647	MIRN647|hsa-mir-647	microRNA 647	ncRNA
173169	chr4	6697851	6698380	+	0	NA	TTS (NM_005980)	TTS (NM_005980)	4237	NM_005980	6286		NM_005980	ENSG00000163993	S100P	MIG9	S100 calcium binding protein P	protein-coding
38401	chr11	44941871	44942580	+	0	NA	intron (NM_001258323, intron 1 of 7)	(AC)n|Simple_repeat|Simple_repeat	7935	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
64407	chr14	24174351	24174700	+	0	NA	intron (NM_001048205, intron 5 of 18).2	AluSx1|SINE|Alu	2445	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
9868	chr1	54301221	54301900	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	65117	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
153840	chr22	30088941	30089430	+	0	NA	intron (NM_001329457, intron 2 of 11)	intron (NM_001329457, intron 2 of 11)	8721	NM_001329458	150280		NM_152510	ENSG00000176635	HORMAD2	CT46.2	HORMA domain containing 2	protein-coding
91113	chr17	3680671	3680900	+	0	NA	intron (NM_002561, intron 10 of 11)	intron (NM_002561, intron 10 of 11)	11973	NM_031298	83460		NM_031298	ENSG00000127774	EMC6	RAB5IFL|TMEM93	ER membrane protein complex subunit 6	protein-coding
122907	chr19	50568971	50569330	+	0	NA	promoter-TSS (NM_001080457)	promoter-TSS (NM_001080457)	-715	NM_001080457	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
195345	chr6	36628351	36628800	+	0	NA	Intergenic	AluSg|SINE|Alu	-6063	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
207585	chr7	44956471	44957400	+	0	NA	Intergenic	AluSz6|SINE|Alu	22080	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
231234	chr9	129973371	129973930	+	0	NA	intron (NM_001363755, intron 4 of 15)	AluY|SINE|Alu	69539	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
126344	chr2	27382951	27383450	+	0	NA	intron (NM_177983, intron 7 of 9)	intron (NM_177983, intron 7 of 9)	-2466	NM_144631	130557		NM_144631	ENSG00000163795	ZNF513	HMFT0656|RP58|Zfp513	zinc finger protein 513	protein-coding
227474	chr9	91146371	91146850	+	0	NA	intron (NR_135306, intron 2 of 2)	intron (NR_135306, intron 2 of 2)	27548	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
29501	chr10	70600471	70600630	+	0	NA	exon (NM_001083116, exon 2 of 3)	exon (NM_001083116, exon 2 of 3)	2191	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
109923	chr19	1299571	1300700	+	0	NA	3' UTR (NM_001405, exon 4 of 4)	3' UTR (NM_001405, exon 4 of 4)	14262	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
210565	chr7	100349601	100350000	+	0	NA	non-coding (NR_036569, exon 5 of 18)	non-coding (NR_036569, exon 5 of 18)	-2518	NR_103728	101752334		NR_103728		PVRIG2P	-	PVR related immunoglobulin domain containing 2, pseudogene	pseudo
195870	chr6	41549601	41549830	+	0	NA	intron (NM_138457, intron 1 of 16)	L2b|LINE|L2	-1094	NR_126415	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
24564	chr1	244918371	244919200	+	0	NA	Intergenic	CpG	-51084	NM_032328	84288		NM_032328	ENSG00000203666	EFCAB2	CFAP200|DRC8	EF-hand calcium binding domain 2	protein-coding
182403	chr5	61336021	61336700	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	4102	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
37807	chr11	32919271	32919530	+	0	NA	intron (NM_001076786, intron 1 of 12)	L1MC3|LINE|L1	26589	NM_001076786	79832		NM_024774	ENSG00000060749	QSER1	-	glutamine and serine rich 1	protein-coding
108233	chr18	63202821	63203080	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	116819	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
139518	chr2	224564251	224564550	+	0	NA	intron (NM_003590, intron 1 of 15)	Tigger7|DNA|TcMar-Tigger	5555	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
33829	chr10	123991671	123992030	+	0	NA	Intergenic	(GGC)n|Simple_repeat|Simple_repeat	-100043	NM_198148	119587		NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	carboxypeptidase X, M14 family member 2	protein-coding
46148	chr11	123051501	123052330	+	0	NA	Intergenic	Intergenic	6241	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
57124	chr12	121207751	121208150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2179	NR_046372	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
8699	chr1	42176921	42177200	+	0	NA	3' UTR (NM_014947, exon 13 of 13)	3' UTR (NM_014947, exon 13 of 13)	-12315	NM_033553	2980		NM_033553	ENSG00000197273	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A	protein-coding
228648	chr9	107174651	107174950	+	0	NA	Intergenic	Intergenic	-71812	NR_126029	340512		NR_126029	ENSG00000230782	LOC340512	-	uncharacterized LOC340512	ncRNA
104115	chr17	80294251	80294550	+	0	NA	intron (NM_020954, intron 8 of 16)	intron (NM_020954, intron 8 of 16)	33548	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
67231	chr14	68959071	68959430	+	0	NA	intron (NM_001130004, intron 1 of 21)	L4_C_Mam|LINE|RTE-X	20052	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
221445	chr8	124197751	124198580	+	0	NA	intron (NR_125420, intron 2 of 2)	intron (NR_125420, intron 2 of 2)	-26643	NR_103547	157376		NM_182525	ENSG00000253868	FER1L6-AS2	C8orf78	FER1L6 antisense RNA 2	ncRNA
86417	chr16	66850871	66851030	+	0	NA	intron (NM_005182, intron 3 of 6)	L2c|LINE|L2	6021	NM_001365337	766		NM_005182	ENSG00000168748	CA7	CA-VII|CAVII	carbonic anhydrase 7	protein-coding
70671	chr14	103078101	103079050	+	0	NA	Intergenic	AluJb|SINE|Alu	-5635	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
223767	chr8	144530771	144530950	+	0	NA	exon (NM_001308208, exon 10 of 11)	exon (NM_001308208, exon 10 of 11)	-1749	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
101932	chr17	74473721	74475100	+	0	NA	intron (NM_007261, intron 2 of 6)	intron (NM_007261, intron 2 of 6)	7776	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
46841	chr11	132772901	132773300	+	0	NA	intron (NM_001319104, intron 1 of 6)	intron (NM_001319104, intron 1 of 6)	170537	NM_001319103	4978		NM_002545	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule like	protein-coding
25622	chr10	8078151	8078450	+	0	NA	Intergenic	MIR3|SINE|MIR	23612	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
167302	chr3	128680551	128681950	+	0	NA	Intergenic	CpG	-30432	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
140923	chr2	237718301	237718630	+	0	NA	intron (NM_001137550, intron 4 of 23)	L2|LINE|L2	26260	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
231380	chr9	130693301	130694500	+	0	NA	exon (NM_001282708, exon 1 of 8)	exon (NM_001282708, exon 1 of 8)	120	NM_014285	23404		NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|SHRF|hRrp4p|p7	exosome component 2	protein-coding
66268	chr14	61368251	61368600	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	46982	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
107813	chr18	51211371	51212300	+	0	NA	Intergenic	Intergenic	-14154	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
28255	chr10	45655301	45655500	+	0	NA	intron (NM_174890, intron 2 of 9)	L1PB|LINE|L1	17332	NM_001282905	93550		NM_174890	ENSG00000172671	ZFAND4	ANUBL1	zinc finger AN1-type containing 4	protein-coding
15366	chr1	150102751	150103450	+	0	NA	intron (NR_103998, intron 12 of 13)	intron (NR_103998, intron 12 of 13)	35324	NR_103998	11311		NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
93020	chr17	17238601	17238800	+	0	NA	Intergenic	AluSc|SINE|Alu	-1532	NM_144606	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
114364	chr19	12399821	12400600	+	0	NA	intron (NM_001322498, intron 1 of 4)	intron (NM_001322498, intron 1 of 4)	770	NM_001322497	90576		NM_203381	ENSG00000196466	ZNF799	HIT-40|HIT40|ZNF842	zinc finger protein 799	protein-coding
210472	chr7	100151801	100152000	+	0	NA	intron (NR_134530, intron 2 of 3)	AluJr4|SINE|Alu	2922	NR_134530								
2274	chr1	8937421	8937680	+	0	NA	Intergenic	AluSx4|SINE|Alu	-8318	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
45790	chr11	119316901	119317780	+	0	NA	promoter-TSS (NM_006500)	promoter-TSS (NM_006500)	-210	NM_006500	4162		NM_006500	ENSG00000076706	MCAM	CD146|HEMCAM|METCAM|MUC18|MelCAM	melanoma cell adhesion molecule	protein-coding
215538	chr7	158782171	158783140	+	0	NA	intron (NM_020728, intron 6 of 21)	intron (NM_020728, intron 6 of 21)	46854	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
13752	chr1	116984171	116984530	+	0	NA	intron (NM_020440, intron 7 of 8)	intron (NM_020440, intron 7 of 8)	-17400	NM_001256111	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
117205	chr19	19391371	19391530	+	0	NA	intron (NM_001384535, intron 1 of 10)	intron (NM_001384535, intron 1 of 10)	5607	NM_001384518	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
131037	chr2	88191421	88191680	+	0	NA	Intergenic	Intergenic	21204	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
201039	chr6	142088751	142089050	+	0	NA	5' UTR (NM_002511, exon 2 of 4)	5' UTR (NM_002511, exon 2 of 4)	-44259	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
16533	chr1	154947401	154948300	+	0	NA	intron (NM_001317734, intron 6 of 9)	intron (NM_001317734, intron 6 of 9)	-5192	NM_001323012	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
146316	chr20	49207101	49207380	+	0	NA	intron (NM_001319135, intron 1 of 14)	intron (NM_001319135, intron 1 of 14)	12055	NM_001319135	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
237884	chrX	131263021	131263280	+	0	NA	Intergenic	Intergenic	25911	NM_001170963	3547		NM_001555	ENSG00000147255	IGSF1	CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120	immunoglobulin superfamily member 1	protein-coding
160351	chr3	27729771	27730600	+	0	NA	Intergenic	CpG	-7470	NM_001278183	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
230098	chr9	127567071	127567830	+	0	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	1623	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
238310	chrX	149501271	149502330	+	0	NA	intron (NM_001166550, intron 3 of 8)	intron (NM_001166550, intron 3 of 8)	3506	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
223510	chr8	144099321	144099730	+	0	NA	non-coding (NR_038270, exon 5 of 8)	non-coding (NR_038270, exon 5 of 8)	4248	NR_038270	81858		NM_030974	ENSG00000179526	SHARPIN	AIFID|SIPL1	SHANK associated RH domain interactor	protein-coding
177253	chr4	109294071	109294250	+	0	NA	intron (NM_198721, intron 3 of 36)	intron (NM_198721, intron 3 of 36)	8498	NM_032518	84570		NM_032518	ENSG00000188517	COL25A1	AMY|CFEOM5|CLAC|CLAC-P|CLACP	collagen type XXV alpha 1 chain	protein-coding
189235	chr5	171959001	171959380	+	0	NA	intron (NM_012300, intron 1 of 12)	intron (NM_012300, intron 1 of 12)	47448	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
95626	chr17	37646851	37646950	+	0	NA	Intergenic	MIRb|SINE|MIR	-3454	NM_007010	11056		NM_007010	ENSG00000278053	DDX52	HUSSY19|ROK1	DExD-box helicase 52	protein-coding
45765	chr11	119249671	119249830	+	0	NA	intron (NM_005188, intron 2 of 15)	AluJb|SINE|Alu	43411	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
17046	chr1	156085771	156085930	+	0	NA	intron (NM_001282625, intron 2 of 12)	AluSz6|SINE|Alu	3277	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
166129	chr3	111325571	111325730	+	0	NA	Intergenic	L2c|LINE|L2	-216547	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
188925	chr5	160423871	160424030	+	0	NA	intron (NM_001282382, intron 2 of 4)	Tigger19a|DNA|TcMar-Tigger	2040	NM_001282382	9232		NM_004219	ENSG00000164611	PTTG1	EAP1|ECRAR|HPTTG|PTTG|TUTR1	PTTG1 regulator of sister chromatid separation, securin	protein-coding
226023	chr9	42179571	42179930	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-3909	NM_001145196	389730		NM_001145196	ENSG00000185775	SPATA31A6	FAM75A6	SPATA31 subfamily A member 6	protein-coding
98603	chr17	47748151	47748450	+	0	NA	Intergenic	Intergenic	15064	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
159065	chr3	11716771	11717130	+	0	NA	intron (NM_014667, intron 1 of 5)	intron (NM_014667, intron 1 of 5)	3589	NM_001284390	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
79732	chr16	1329251	1330180	+	0	NA	Intergenic	Intergenic	-3930	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
237005	chrX	102142101	102142580	+	0	NA	intron (NM_001006938, intron 1 of 2)	CpG	141	NM_001006938	158931		NM_001006938		TCEAL6	Tceal3|WEX2	transcription elongation factor A like 6	protein-coding
146585	chr20	50106071	50106850	+	0	NA	intron (NM_001257399, intron 1 of 4)	intron (NM_001257399, intron 1 of 4)	6690	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
66808	chr14	64730171	64730330	+	0	NA	exon (NM_001308147, exon 4 of 17)	exon (NM_001308147, exon 4 of 17)	25826	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
72955	chr15	40465701	40466700	+	0	NA	non-coding (NR_125372, exon 5 of 5)	non-coding (NR_125372, exon 5 of 5)	-4784	NM_130468	113189		NM_130468	ENSG00000169105	CHST14	ATCS|D4ST1|EDSMC1|HNK1ST	carbohydrate sulfotransferase 14	protein-coding
186616	chr5	138532971	138533150	+	0	NA	intron (NM_001291975, intron 2 of 11)	AluSg|SINE|Alu	8651	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
10340	chr1	64917221	64918550	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	48664	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
46911	chr11	134228351	134229280	+	0	NA	intron (NM_052875, intron 1 of 5)	intron (NM_052875, intron 1 of 5)	-3354	NM_001372070	23310		NM_015261	ENSG00000151503	NCAPD3	CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6	non-SMC condensin II complex subunit D3	protein-coding
81558	chr16	9122171	9122700	+	0	NA	TTS (NM_014117)	TTS (NM_014117)	30791	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
219342	chr8	70229571	70229730	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	-158398	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
29923	chr10	73358201	73359400	+	0	NA	promoter-TSS (NM_001350934)	promoter-TSS (NM_001350934)	-46	NM_001350934	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
29892	chr10	73095701	73097800	+	0	NA	intron (NM_001142595, intron 1 of 15)	CpG	224	NM_001142596	5033		NM_000917	ENSG00000122884	P4HA1	P4HA	prolyl 4-hydroxylase subunit alpha 1	protein-coding
170492	chr3	186111121	186111800	+	0	NA	Intergenic	L2c|LINE|L2	-2371	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
153692	chr22	29205571	29206280	+	0	NA	promoter-TSS (NM_001267895)	promoter-TSS (NM_001267895)	29	NM_001267895	129080		NM_133455	ENSG00000186998	EMID1	EMI5|EMU1	EMI domain containing 1	protein-coding
113612	chr19	10303501	10303900	+	0	NA	Intergenic	AluJb|SINE|Alu	5857	NM_001103167	100125288		NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	zinc finger GATA like protein 1	protein-coding
173285	chr4	7063021	7063980	+	0	NA	intron (NM_025196, intron 2 of 3)	intron (NM_025196, intron 2 of 3)	4564	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
66101	chr14	59576101	59576960	+	0	NA	intron (NM_001164399, intron 1 of 19)	CpG	282	NM_001164399	729665		NM_001164399	ENSG00000151838	CCDC175	C14orf38|c14_5395	coiled-coil domain containing 175	protein-coding
3156	chr1	12597901	12598500	+	0	NA	intron (NM_004753, intron 1 of 5)	AluJb|SINE|Alu	-1587	NM_001324370	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
182291	chr5	57494721	57494980	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-12039	NM_001017992	345651		NM_001017992	ENSG00000169067	ACTBL2	ACT	actin beta like 2	protein-coding
135796	chr2	169826821	169828850	+	0	NA	exon (NM_172070, exon 1 of 39)	exon (NM_172070, exon 1 of 39)	381	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
192555	chr6	25368501	25368700	+	0	NA	intron (NM_001173977, intron 2 of 36)	intron (NM_001173977, intron 2 of 36)	89226	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
110298	chr19	1834821	1835250	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	12946	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
150218	chr21	39583901	39584130	+	0	NA	Intergenic	(TCCCT)n|Simple_repeat|Simple_repeat	28807	NR_026543	114041		NM_153754		B3GALT5-AS1	C21orf88	B3GALT5 antisense RNA 1	ncRNA
126271	chr2	27176721	27176980	+	0	NA	Intergenic	Intergenic	27846	NM_175769	150921		NM_175769	ENSG00000163792	TCF23	OUT|TCF-23|bHLHa24	transcription factor 23	protein-coding
211237	chr7	102646951	102647450	+	0	NA	intron (NM_032959, intron 4 of 8)	AluSx|SINE|Alu	-3125	NM_001166339	100310812		NM_001166339	ENSG00000173678	SPDYE2B	SPDYE2L	speedy/RINGO cell cycle regulator family member E2B	protein-coding
121354	chr19	46828271	46828830	+	0	NA	Intergenic	Intergenic	2154	NR_024258	100170220		NR_024258		SNAR-E	-	small NF90 (ILF3) associated RNA E	snRNA
111301	chr19	3600001	3600400	+	0	NA	exon (NM_001060, exon 2 of 3)	exon (NM_001060, exon 2 of 3)	6675	NM_201636	6915		NM_001060	ENSG00000006638	TBXA2R	BDPLT13|TXA2-R	thromboxane A2 receptor	protein-coding
37267	chr11	14668821	14669480	+	0	NA	intron (NM_001363569, intron 1 of 15)	LTR33|LTR|ERVL	25346	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
67430	chr14	70638501	70638700	+	0	NA	intron (NR_110071, intron 1 of 2)	MIRb|SINE|MIR	2698	NR_110071	101928075		NR_110071	ENSG00000245466	TTC9-DT	-	TTC9 divergent transcript	ncRNA
42928	chr11	73399921	73400950	+	0	NA	TTS (NM_001286051)	TTS (NM_001286051)	23767	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
102105	chr17	74991951	74992250	+	0	NA	intron (NM_014603, intron 1 of 4)	intron (NM_014603, intron 1 of 4)	4468	NM_014603	30850		NM_014603	ENSG00000109089	CDR2L	HUMPPA	cerebellar degeneration related protein 2 like	protein-coding
203553	chr7	889851	890680	+	0	NA	intron (NM_015949, intron 4 of 8)	CpG	13711	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
200867	chr6	138765901	138766200	+	0	NA	intron (NR_161205, intron 1 of 2)	intron (NR_161205, intron 1 of 2)	7653	NR_161204	100507462		NM_001242740	ENSG00000279968	CCDC28A-AS1	GVQW2	CCDC28A antisense RNA 1	ncRNA
130869	chr2	87405621	87405880	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-49677	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
44313	chr11	102366401	102366600	+	0	NA	intron (NM_001256166, intron 5 of 8)	AluY|SINE|Alu	19126	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
217887	chr8	37874521	37874780	+	0	NA	exon (NM_001002814, exon 3 of 6)	exon (NM_001002814, exon 3 of 6)	-24789	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
99896	chr17	56832671	56834500	+	0	NA	promoter-TSS (NM_003647)	promoter-TSS (NM_003647)	335	NM_001085430	339210		NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
57625	chr12	122504121	122504880	+	0	NA	non-coding (NR_036435, exon 11 of 11)	non-coding (NR_036435, exon 11 of 11)	-3568	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
111034	chr19	3090121	3090450	+	0	NA	Intergenic	AluSx|SINE|Alu	-4077	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
207316	chr7	44034021	44034450	+	0	NA	non-coding (NR_024116, exon 6 of 9)	non-coding (NR_024116, exon 6 of 9)	-4814	NR_072982	255031		NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
62543	chr13	99614201	99614830	+	0	NA	intron (NM_206808, intron 1 of 8)	intron (NM_206808, intron 1 of 8)	7825	NR_104592	171425		NM_206808	ENSG00000125246	CLYBL	CLB	citramalyl-CoA lyase	protein-coding
226455	chr9	71716021	71716680	+	0	NA	intron (NM_001135820, intron 13 of 22)	intron (NM_001135820, intron 13 of 22)	52163	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
185015	chr5	115309651	115309980	+	0	NA	Intergenic	Intergenic	-13161	NM_001375899	153733		NM_152549	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
28534	chr10	50508051	50508800	+	0	NA	intron (NM_147156, intron 3 of 10)	MIRb|SINE|MIR	115531	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
184413	chr5	98918571	98919050	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-9752	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
233446	chr9	137625271	137625900	+	0	NA	intron (NM_001354612, intron 1 of 8)	AluSz6|SINE|Alu	6580	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
222048	chr8	130262351	130262450	+	0	NA	intron (NM_001362924, intron 3 of 30)	AluSg4|SINE|Alu	34133	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
95950	chr17	39016601	39017400	+	0	NA	Intergenic	Intergenic	10110	NR_135645	105371766		NR_135645	ENSG00000266013	LINC02079	-	long intergenic non-protein coding RNA 2079	ncRNA
127850	chr2	45612251	45612580	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-1148	NM_018079	55133		NM_018079	ENSG00000068784	SRBD1	-	S1 RNA binding domain 1	protein-coding
204369	chr7	2959171	2959930	+	0	NA	intron (NM_032415, intron 1 of 24)	intron (NM_032415, intron 1 of 24)	84317	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
134367	chr2	136225821	136226800	+	0	NA	Intergenic	Intergenic	-108161	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
162421	chr3	48320721	48321200	+	0	NA	intron (NM_001080525, intron 2 of 4)	intron (NM_001080525, intron 2 of 4)	-4501	NR_031749	100313840		NR_031749	ENSG00000252466	MIR2115	-	microRNA 2115	ncRNA
156809	chr22	41925801	41926400	+	0	NA	intron (NM_052945, intron 2 of 2)	CpG	706	NM_052945	115650		NM_052945	ENSG00000159958	TNFRSF13C	BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin	TNF receptor superfamily member 13C	protein-coding
9139	chr1	45498771	45498930	+	0	NA	intron (NR_033298, intron 2 of 5)	intron (NR_033298, intron 2 of 5)	1223	NM_001358406	126661		NM_001102601	ENSG00000280670	CCDC163	C1orf231|CCDC163P	CCDC163 homolog	protein-coding
72437	chr15	31511521	31512030	+	0	NA	intron (NM_130901, intron 9 of 13)	intron (NM_130901, intron 9 of 13)	184940	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
50681	chr12	48858771	48859130	+	0	NA	intron (NM_014470, intron 4 of 4)	AluY|SINE|Alu	-6787	NM_004818	9416		NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
132739	chr2	109351051	109351350	+	0	NA	intron (NM_001099289, intron 2 of 9)	intron (NM_001099289, intron 2 of 9)	-37575	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	ncRNA
54355	chr12	89698821	89699080	+	0	NA	intron (NM_001366520, intron 1 of 21)	HAL1|LINE|L1	9888	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
202737	chr6	158995151	158995650	+	0	NA	intron (NR_144434, intron 1 of 8)	MLT1D|LTR|ERVL-MaLR	4787	NR_144434	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
101511	chr17	67727351	67727850	+	0	NA	intron (NM_001303272, intron 6 of 16)	AluSp|SINE|Alu	9664	NM_015462	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
54406	chr12	90036451	90036830	+	0	NA	Intergenic	Intergenic	88947	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
90288	chr17	1026301	1026500	+	0	NA	intron (NM_001282149, intron 11 of 17).3	intron (NM_001282149, intron 11 of 17).3	-3841	NR_036148	100422835		NR_036148	ENSG00000264429	MIR3183	mir-3183	microRNA 3183	ncRNA
211010	chr7	102349621	102350080	+	0	NA	intron (NM_001146210, intron 5 of 7)	intron (NM_001146210, intron 5 of 7)	6594	NM_001146210	729597		NM_001146210	ENSG00000260097	SPDYE6	-	speedy/RINGO cell cycle regulator family member E6	protein-coding
98970	chr17	48720751	48721630	+	0	NA	TTS (NM_032391)	TTS (NM_032391)	1328	NM_032391	84366		NM_032391	ENSG00000159182	PRAC1	C17orf92|PRAC	PRAC1 small nuclear protein	protein-coding
43505	chr11	78645251	78645800	+	0	NA	Intergenic	Intergenic	-70661	NM_001243251	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
111978	chr19	4870051	4870430	+	0	NA	Intergenic	L2a|LINE|L2	-2573	NM_001164189	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
100109	chr17	58328601	58329200	+	0	NA	promoter-TSS (NR_038411)	promoter-TSS (NR_038411)	-38	NR_038411	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
6271	chr1	27592271	27592630	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	11044	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
118337	chr19	35612001	35613880	+	0	NA	intron (NM_015302, intron 1 of 18)	intron (NM_015302, intron 1 of 18)	205	NM_015302	23354		NM_015302	ENSG00000249115	HAUS5	KIAA0841|dgt5	HAUS augmin like complex subunit 5	protein-coding
11187	chr1	87435551	87435850	+	0	NA	Intergenic	Intergenic	-64045	NR_038324	100505768		NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
179645	chr4	188740821	188741330	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-35582	NR_149102	105377610		NR_149102	ENSG00000251619	LINC02508	-	long intergenic non-protein coding RNA 2508	ncRNA
230107	chr9	127606871	127607030	+	0	NA	Intergenic	Intergenic	-4962	NM_001374309	6812		NM_003165	ENSG00000136854	STXBP1	DEE4|MUNC18-1|N-Sec1|NSEC1|P67|RBSEC1|UNC18|unc-18A|unc18-1	syntaxin binding protein 1	protein-coding
124917	chr2	8518071	8518230	+	0	NA	Intergenic	Intergenic	65642	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
128057	chr2	47787501	47787930	+	0	NA	intron (NM_001281494, intron 1 of 9)	AluJb|SINE|Alu	3760	NM_001281494	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
132865	chr2	111085671	111085830	+	0	NA	intron (NM_001371254, intron 17 of 18)	L1PREC2|LINE|L1	29838	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
39434	chr11	60911901	60912880	+	0	NA	Intergenic	Intergenic	-1768	NM_024092	79073		NM_024092	ENSG00000110108	TMEM109	SND3|hSND3	transmembrane protein 109	protein-coding
101836	chr17	73722101	73722730	+	0	NA	Intergenic	Intergenic	-15439	NR_164140	100134391		NR_164140	ENSG00000263574	LOC100134391	-	uncharacterized LOC100134391	ncRNA
38200	chr11	36387051	36387150	+	0	NA	intron (NM_024841, intron 2 of 9)	intron (NM_024841, intron 2 of 9)	11115	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
178473	chr4	148425501	148426050	+	0	NA	intron (NR_148974, intron 2 of 6)	L2a|LINE|L2	16639	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
119943	chr19	41868951	41869050	+	0	NA	promoter-TSS (NR_106855)	promoter-TSS (NR_106855)	-627	NR_106855	102465478		NR_106855	ENSG00000276926	MIR6797	hsa-mir-6797	microRNA 6797	ncRNA
51019	chr12	49739251	49739750	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-2057	NM_003217	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
55011	chr12	96371301	96371880	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSp|SINE|Alu	28849	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
39252	chr11	57713871	57714630	+	0	NA	intron (NR_144933, intron 1 of 6)	LTR49-int|LTR|ERV1	1657	NM_015959	51075		NM_015959	ENSG00000213593	TMX2	CGI-31|NEDMCMS|PDIA12|PIG26|TXNDC14	thioredoxin related transmembrane protein 2	protein-coding
217506	chr8	29085621	29086280	+	0	NA	intron (NM_015254, intron 37 of 39)	intron (NM_015254, intron 37 of 39)	177120	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
199877	chr6	127814771	127815200	+	0	NA	intron (NM_001010923, intron 3 of 5).2	AluJb|SINE|Alu	40203	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
90939	chr17	2622371	2623130	+	0	NA	intron (NM_000430, intron 1 of 10)	THE1A-int|LTR|ERVL-MaLR	29096	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
99351	chr17	49878551	49879400	+	0	NA	Intergenic	Intergenic	-30958	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
91773	chr17	6940301	6941030	+	0	NA	Intergenic	MER51A|LTR|ERV1	46888	NR_120453	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
122582	chr19	49687921	49688230	+	0	NA	promoter-TSS (NM_001101340)	promoter-TSS (NM_001101340)	-610	NM_001101340	199800		NM_001101340	ENSG00000224420	ADM5	AM5|C19orf76	adrenomedullin 5 (putative)	protein-coding
108581	chr18	75168021	75168280	+	0	NA	Intergenic	Intergenic	37363	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
218080	chr8	38933421	38934100	+	0	NA	intron (NM_021623, intron 2 of 11)	intron (NM_021623, intron 2 of 11)	32414	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
83377	chr16	25276621	25276930	+	0	NA	Intergenic	Intergenic	-18930	NM_001012981	342357		NM_001012981	ENSG00000155592	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding
30511	chr10	79328671	79329030	+	0	NA	Intergenic	Intergenic	-18619	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
221702	chr8	127170901	127171100	+	0	NA	Intergenic	L2a|LINE|L2	26627	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
204063	chr7	1996151	1996250	+	0	NA	intron (NM_001304524, intron 12 of 16)	intron (NM_001304524, intron 12 of 16)	-55629	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
69781	chr14	99181221	99181850	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	90662	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
205465	chr7	17297101	17297630	+	0	NA	Intergenic	L2|LINE|L2	-1287	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
34830	chr11	301121	301380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1724	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
130735	chr2	86783701	86784480	+	0	NA	TTS (NR_027353)	TTS (NR_027353)	6823	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
17304	chr1	156448501	156449350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-19377	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
132951	chr2	111461721	111462050	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	33276	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
57272	chr12	121627201	121628390	+	0	NA	intron (NM_032790, intron 2 of 2)	AluSg|SINE|Alu	1245	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
149109	chr21	17512101	17513950	+	0	NA	promoter-TSS (NM_001207063)	promoter-TSS (NM_001207063)	-18	NM_001207065	1525		NM_001338	ENSG00000154639	CXADR	CAR|CAR4/6|HCAR	CXADR Ig-like cell adhesion molecule	protein-coding
82392	chr16	16144251	16144550	+	0	NA	Intergenic	Intergenic	79071	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
83668	chr16	28363471	28363830	+	0	NA	promoter-TSS (NM_001282524)	promoter-TSS (NM_001282524)	-790	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
84818	chr16	31084001	31084200	+	0	NA	TTS (NM_014699)	TTS (NM_014699)	4709	NM_001039503	339105		NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	serine protease 53	protein-coding
186134	chr5	134155921	134157200	+	0	NA	3' UTR (NM_006930, exon 5 of 5)	3' UTR (NM_006930, exon 5 of 5)	20390	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
129741	chr2	70963321	70963780	+	0	NA	intron (NM_001692, intron 10 of 13)	intron (NM_001692, intron 10 of 13)	-14895	NM_001369683	79998		NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
205572	chr7	21353821	21354530	+	0	NA	Intergenic	AluJr|SINE|Alu	-73908	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
132601	chr2	108530701	108532200	+	0	NA	intron (NR_135290, intron 1 of 2)	LTR2|LTR|ERV1	-2221	NM_001371496	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
58163	chr12	124949001	124949400	+	0	NA	intron (NM_032656, intron 25 of 26)	intron (NM_032656, intron 25 of 26)	33653	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
3365	chr1	15607501	15607980	+	0	NA	Intergenic	L1MB8|LINE|L1	-9718	NM_032341	84301		NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
101497	chr17	67655351	67656680	+	0	NA	intron (NM_181671, intron 6 of 9)	intron (NM_181671, intron 6 of 9)	-61818	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
231499	chr9	131397321	131397680	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	3414	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
135768	chr2	169685871	169686230	+	0	NA	intron (NM_001085447, intron 1 of 8)	FAM|SINE|Alu	8355	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
177748	chr4	122576501	122577330	+	0	NA	Intergenic	Intergenic	-42068	NR_104126	100996941		NR_104126	ENSG00000227145	IL21-AS1	-	IL21 antisense RNA 1	ncRNA
42364	chr11	68684251	68685150	+	0	NA	5' UTR (NM_015973, exon 1 of 6)	5' UTR (NM_015973, exon 1 of 6)	156	NM_015973	51083		NM_015973	ENSG00000069482	GAL	ETL8|GAL-GMAP|GALN|GLNN|GMAP	galanin and GMAP prepropeptide	protein-coding
200438	chr6	135025221	135025680	+	0	NA	intron (NM_001363686, intron 4 of 18)	intron (NM_001363686, intron 4 of 18)	29372	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
190559	chr5	180803601	180805250	+	0	NA	promoter-TSS (NM_001114620)	promoter-TSS (NM_001114620)	-523	NM_001114620	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
219193	chr8	66609201	66609770	+	0	NA	intron (NM_001294282, intron 1 of 14)	intron (NM_001294282, intron 1 of 14)	3733	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
26908	chr10	26453171	26453830	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	15159	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
94039	chr17	27305921	27306180	+	0	NA	intron (NM_134265, intron 2 of 6)	intron (NM_134265, intron 2 of 6)	11936	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
228254	chr9	97991801	97992300	+	0	NA	intron (NM_006401, intron 1 of 6)	intron (NM_006401, intron 1 of 6)	8709	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
218201	chr8	42009321	42010880	+	0	NA	intron (NM_001305878, intron 2 of 13)	AluSz|SINE|Alu	-41650	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
176158	chr4	83235201	83236030	+	0	NA	Intergenic	LTR7|LTR|ERV1	49183	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
69823	chr14	99221251	99221800	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	50672	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
84111	chr16	29660221	29660480	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2600	NM_001030288	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
110266	chr19	1805221	1806980	+	0	NA	exon (NM_138813, exon 8 of 29)	exon (NM_138813, exon 8 of 29)	6176	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
107286	chr18	44709571	44710330	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	9075	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
102564	chr17	75854221	75856350	+	0	NA	promoter-TSS (NM_001330499)	promoter-TSS (NM_001330499)	50	NM_012478	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
69992	chr14	100025201	100025500	+	0	NA	intron (NM_001330221, intron 1 of 13)	L2a|LINE|L2	-40072	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
32477	chr10	102659951	102660250	+	0	NA	Intergenic	AluJb|SINE|Alu	15605	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
49638	chr12	28247201	28247400	+	0	NA	intron (NM_001352086, intron 3 of 15)	AluYh3|SINE|Alu	-56562	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
194551	chr6	33341651	33342630	+	0	NA	Intergenic	AluSp|SINE|Alu	-12861	NM_001369203	113523636		NM_001369203	ENSG00000286920	SMIM40	-	small integral membrane protein 40	protein-coding
184295	chr5	96822901	96823450	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-9030	NM_001198541	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
213148	chr7	131507751	131508250	+	0	NA	intron (NM_005397, intron 4 of 7)	(GTTCTA)n|Simple_repeat|Simple_repeat	48628	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
145733	chr20	45062001	45062250	+	0	NA	intron (NM_001352385, intron 11 of 11)	AluSz|SINE|Alu	39002	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
174328	chr4	38671221	38672050	+	0	NA	intron (NM_016531, intron 1 of 5)	MIR|SINE|MIR	-7007	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
55640	chr12	107103121	107103380	+	0	NA	Intergenic	L2a|LINE|L2	-9701	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
63934	chr14	22046101	22046500	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-375283	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
48491	chr12	9830901	9831100	+	0	NA	intron (NM_016523, intron 1 of 5)	AluSx3|SINE|Alu	3519	NM_001291822	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
48805	chr12	12006751	12007250	+	0	NA	Intergenic	AluSz|SINE|Alu	-42861	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
103477	chr17	78350001	78350200	+	0	NA	Intergenic	L2c|LINE|L2	9567	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
233479	chr9	137787651	137787950	+	0	NA	intron (NR_147508, intron 1 of 2)	intron (NR_147508, intron 1 of 2)	606	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
84450	chr16	30422621	30423080	+	0	NA	TTS (NM_024096)	TTS (NM_024096)	-3091	NR_145731	109616959		NR_145731	ENSG00000199787	SNORA80C	-	small nucleolar RNA, H/ACA box 80C	snoRNA
106419	chr18	13536521	13536780	+	0	NA	intron (NM_001378099, intron 4 of 6)	L1ME1|LINE|L1	-74464	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
117211	chr19	19403101	19403930	+	0	NA	intron (NM_001384535, intron 1 of 10)	intron (NM_001384535, intron 1 of 10)	-2160	NM_001384527	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
157291	chr22	44325951	44326250	+	0	NA	Intergenic	Intergenic	-13149	NM_001099294	85352		NM_001099294	ENSG00000138944	SHISAL1	KIAA1644	shisa like 1	protein-coding
236417	chrX	71256801	71257000	+	0	NA	Intergenic	L1MC1|LINE|L1	-1703	NM_001171162	9203		NM_005096	ENSG00000147130	ZMYM3	DXS6673E|MYM|XFIM|XLID112|ZNF198L2|ZNF261	zinc finger MYM-type containing 3	protein-coding
57752	chr12	122968971	122969130	+	0	NA	Intergenic	Intergenic	-2541	NM_019624	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
3410	chr1	15761101	15761300	+	0	NA	intron (NM_001024216, intron 1 of 6)	intron (NM_001024216, intron 1 of 6)	2405	NM_001024216	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
110784	chr19	2432801	2433630	+	0	NA	intron (NM_032737, intron 8 of 11)	CpG	1785	NR_106958	102466806		NR_106958	ENSG00000283728	MIR7108	hsa-mir-7108	microRNA 7108	ncRNA
107764	chr18	50820821	50821080	+	0	NA	promoter-TSS (NM_031939)	promoter-TSS (NM_031939)	-934	NM_031939	83876		NM_031939	ENSG00000134042	MRO	B29|C18orf3	maestro	protein-coding
147290	chr20	57617701	57618600	+	0	NA	intron (NM_030776, intron 1 of 7)	intron (NM_030776, intron 1 of 7)	2276	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
7594	chr1	35191721	35192500	+	0	NA	intron (NR_136702, intron 1 of 11)	CpG	1035	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
44235	chr11	96463871	96464250	+	0	NA	intron (NR_047481, intron 1 of 4)	intron (NR_047481, intron 1 of 4)	42817	NR_047481	100874053		NR_047481		JRKL-AS1	-	JRKL antisense RNA 1	ncRNA
129412	chr2	69012551	69013230	+	0	NA	promoter-TSS (NM_018153)	promoter-TSS (NM_018153)	-254	NM_053034	84168		NM_018153	ENSG00000169604	ANTXR1	ATR|GAPO|TEM8	ANTXR cell adhesion molecule 1	protein-coding
60667	chr13	43042571	43042730	+	0	NA	intron (NM_013238, intron 1 of 5)	MLT2C1|LTR|ERVL	19064	NM_013238	29103		NM_013238	ENSG00000120675	DNAJC15	DNAJD1|HSD18|MCJ	DnaJ heat shock protein family (Hsp40) member C15	protein-coding
53046	chr12	57619301	57620130	+	0	NA	non-coding (NR_120450, exon 2 of 4)	non-coding (NR_120450, exon 2 of 4)	188	NR_166679	65012		NM_133489	ENSG00000293429	SLC26A10P	SLC26A10	solute carrier family 26 member 10, pseudogene	pseudo
201206	chr6	143528051	143528750	+	0	NA	Intergenic	Intergenic	-16680	NM_032020	2519		NM_032020	ENSG00000001036	FUCA2	dJ20N2.5	alpha-L-fucosidase 2	protein-coding
89854	chr16	89603571	89603730	+	0	NA	Intergenic	Intergenic	-9658	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
9102	chr1	45246771	45246930	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-40245	NM_020883	57643		NM_020883	ENSG00000162415	ZSWIM5	-	zinc finger SWIM-type containing 5	protein-coding
172548	chr4	2395351	2395650	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	23145	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
165023	chr3	71398021	71398800	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-93639	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
60378	chr13	40939021	40939800	+	0	NA	intron (NM_001370329, intron 9 of 9)	intron (NM_001370329, intron 9 of 9)	-17636	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
239463	chrY	56723501	56723930	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-230540	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
225129	chr9	33523221	33523500	+	0	NA	promoter-TSS (NM_001353432)	promoter-TSS (NM_001353432)	-891	NM_001353432	441459		NM_001013728	ENSG00000230453	ANKRD18B	bA255A11.3|bA255A11.5	ankyrin repeat domain 18B	protein-coding
164425	chr3	58899271	58900030	+	0	NA	intron (NR_147234, intron 5 of 10)	L1PA10|LINE|L1	75179	NR_110820	101929238		NR_110820	ENSG00000242428	CFAP20DC-AS1	C3orf67-AS1	CFAP20DC antisense RNA 1	ncRNA
21605	chr1	206560171	206561450	+	0	NA	intron (NM_182665, intron 1 of 4)	MIR3|SINE|MIR	3646	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
158596	chr3	4820421	4820980	+	0	NA	intron (NM_002222, intron 56 of 57)	intron (NM_002222, intron 56 of 57)	-69110	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
118516	chr19	35993771	35994150	+	0	NA	Intergenic	Intergenic	-1228	NM_001042631	644096		NM_001042631	ENSG00000205138	SDHAF1	LYRM8|MC2DN2	succinate dehydrogenase complex assembly factor 1	protein-coding
211169	chr7	102584551	102585050	+	0	NA	intron (NM_001079877, intron 17 of 19)	AluY|SINE|Alu	-12179	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
40812	chr11	64919171	64919630	+	0	NA	Intergenic	Intergenic	-2191	NM_001367971	23130		NM_015104	ENSG00000110046	ATG2A	BLTP4A	autophagy related 2A	protein-coding
145634	chr20	44859051	44859150	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-26605	NM_139323	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
22633	chr1	223710571	223711350	+	0	NA	intron (NM_001146068, intron 1 of 20)	MER4B|LTR|ERV1	-1579	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
83179	chr16	23481501	23481700	+	0	NA	intron (NM_015044, intron 9 of 16)	AluSz6|SINE|Alu	-28411	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
68644	chr14	89945171	89945850	+	0	NA	intron (NM_145231, intron 3 of 5)	L1MEc|LINE|L1	9026	NM_001284268	90141		NM_145231	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
118831	chr19	38583801	38584330	+	0	NA	intron (NM_000540, intron 101 of 105)	L2c|LINE|L2	-12282	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
13124	chr1	111640751	111641050	+	0	NA	intron (NM_001010935, intron 2 of 8)	AluJb|SINE|Alu	-20502	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
104101	chr17	80272501	80273100	+	0	NA	intron (NM_020954, intron 2 of 16)	intron (NM_020954, intron 2 of 16)	11948	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
8050	chr1	38608351	38608450	+	0	NA	Intergenic	Intergenic	133204	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
111586	chr19	4082151	4082600	+	0	NA	Intergenic	Intergenic	-15476	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
33492	chr10	119105621	119105880	+	0	NA	intron (NM_001303111, intron 2 of 9)	AluJb|SINE|Alu	1637	NM_001303111	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
170985	chr3	194632871	194634630	+	0	NA	promoter-TSS (NM_001166306)	promoter-TSS (NM_001166306)	-331	NM_138399	93109		NM_138399	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
188768	chr5	157602571	157602890	+	0	NA	Intergenic	Intergenic	-26955	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
91253	chr17	3963021	3963900	+	0	NA	intron (NM_174953, intron 1 of 22)	intron (NM_174953, intron 1 of 22)	977	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
199371	chr6	116255071	116255630	+	0	NA	non-coding (NR_136520, exon 2 of 2)	non-coding (NR_136520, exon 2 of 2)	1179	NM_001322938	29940		NM_013352	ENSG00000111817	DSE	DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
127782	chr2	44189321	44189580	+	0	NA	intron (NM_177969, intron 1 of 4)	HAL1ME|LINE|L1	20575	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
39772	chr11	61914671	61915130	+	0	NA	intron (NM_001271686, intron 1 of 8)	intron (NM_001271686, intron 1 of 8)	2666	NM_013401	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
107663	chr18	49025451	49025750	+	0	NA	intron (NR_148999, intron 2 of 4)	intron (NR_148999, intron 2 of 4)	1897	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
183647	chr5	80251471	80252350	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	4138	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
15381	chr1	150159601	150159850	+	0	NA	3' UTR (NM_001304724, exon 5 of 5)	3' UTR (NM_001304724, exon 5 of 5)	-1003	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
212706	chr7	129778621	129778900	+	0	NA	Intergenic	CpG	-3746	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
11389	chr1	89666951	89667530	+	0	NA	intron (NM_032270, intron 1 of 2)	L2|LINE|L2	34120	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
236591	chrX	73564701	73565130	+	0	NA	intron (NM_001039840, intron 1 of 5)	AluSx3|SINE|Alu	1767	NM_001039840	53344		NM_001039840	ENSG00000204116	CHIC1	BRX	cysteine rich hydrophobic domain 1	protein-coding
223889	chr9	279621	280130	+	0	NA	intron (NM_001193536, intron 1 of 46)	intron (NM_001193536, intron 1 of 46)	6827	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
113998	chr19	10848101	10848730	+	0	NA	promoter-TSS (NM_001136482)	promoter-TSS (NM_001136482)	0	NM_001136482	255809		NM_001136482	ENSG00000214212	C19orf38	HIDE1	chromosome 19 open reading frame 38	protein-coding
110683	chr19	2275801	2277430	+	0	NA	intron (NM_198532, intron 3 of 3)	intron (NM_198532, intron 3 of 3)	5560	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
153918	chr22	30320321	30320580	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	6491	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
16613	chr1	155073721	155074250	+	0	NA	Intergenic	Intergenic	-4852	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
200361	chr6	134166571	134166730	+	0	NA	Intergenic	L2b|LINE|L2	8216	NM_005627	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
52462	chr12	55952551	55952850	+	0	NA	intron (NM_201554, intron 20 of 23)	intron (NM_201554, intron 20 of 23)	13342	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
145116	chr20	38799001	38800730	+	0	NA	Intergenic	AluJo|SINE|Alu	-5832	NM_001172735	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
158568	chr3	4517601	4518080	+	0	NA	intron (NM_002222, intron 3 of 57)	intron (NM_002222, intron 3 of 57)	24492	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
175727	chr4	77599421	77599680	+	0	NA	intron (NM_006419, intron 1 of 4)	intron (NM_006419, intron 1 of 4)	-6270	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
217381	chr8	28092401	28093850	+	0	NA	promoter-TSS (NM_001284226)	promoter-TSS (NM_001284226)	-14	NM_018091	55140		NM_018091	ENSG00000134014	ELP3	KAT9	elongator acetyltransferase complex subunit 3	protein-coding
82022	chr16	11977771	11977930	+	0	NA	intron (NM_032167, intron 1 of 20)	intron (NM_032167, intron 1 of 20)	1116	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
108306	chr18	63398521	63398980	+	0	NA	intron (NM_004869, intron 8 of 10)	AluSc|SINE|Alu	23726	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
777	chr1	1532421	1533050	+	0	NA	intron (NM_018188, intron 15 of 15)	intron (NM_018188, intron 15 of 15)	7889	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
31926	chr10	100528001	100528900	+	0	NA	intron (NM_001284368, intron 2 of 4)	intron (NM_001284368, intron 2 of 4)	1421	NM_005004	4714		NM_005004	ENSG00000166136	NDUFB8	ASHI|CI-ASHI|MC1DN32	NADH:ubiquinone oxidoreductase subunit B8	protein-coding
23017	chr1	226223071	226224100	+	0	NA	promoter-TSS (NM_031944)	promoter-TSS (NM_031944)	-79	NM_031944	83881		NM_031944	ENSG00000185155	MIXL1	MILD1|MIX|MIXL	Mix paired-like homeobox	protein-coding
111807	chr19	4464951	4466080	+	0	NA	Intergenic	AluSc|SINE|Alu	-6782	NM_001001520	84717		NM_032631	ENSG00000167674	HDGFL2	HDGF-2|HDGF2|HDGFRP2|HRP-2|HRP2	HDGF like 2	protein-coding
225994	chr9	41279551	41279730	+	0	NA	Intergenic	Intergenic	-45805	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
20102	chr1	187087571	187087730	+	0	NA	Intergenic	L2a|LINE|L2	-5192	NR_126347	104169671		NR_126347	ENSG00000230426	LINC01036	-	long intergenic non-protein coding RNA 1036	ncRNA
165329	chr3	88029401	88029600	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	29496	NM_003663	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
186962	chr5	139665051	139665500	+	0	NA	intron (NM_001317207, intron 1 of 2)	intron (NM_001317207, intron 1 of 2)	5720	NM_001317206	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
199658	chr6	122441101	122441500	+	0	NA	Intergenic	AluSx1|SINE|Alu	30507	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
137539	chr2	197220701	197221100	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	22909	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
188796	chr5	157890871	157891430	+	0	NA	Intergenic	MER51A|LTR|ERV1	-32005	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
34183	chr10	128130251	128130350	+	0	NA	Intergenic	Intergenic	-3877	NM_001145966	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
207537	chr7	44822871	44823030	+	0	NA	Intergenic	Intergenic	25137	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
172989	chr4	4227801	4228000	+	0	NA	promoter-TSS (NM_177998)	promoter-TSS (NM_177998)	-971	NM_177998	133060		NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
35700	chr11	1923871	1924230	+	0	NA	intron (NM_001367850, intron 4 of 12)	intron (NM_001367850, intron 4 of 12)	1219	NM_001367843	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
113966	chr19	10802221	10802580	+	0	NA	intron (NM_001005362, intron 12 of 19)	intron (NM_001005362, intron 12 of 19)	15096	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
215691	chr8	893701	893900	+	0	NA	intron (NR_073397, intron 2 of 3)	intron (NR_073397, intron 2 of 3)	-10574	NR_160729	105377777		NR_160729		LOC105377777	-	uncharacterized LOC105377777	ncRNA
144272	chr20	34566501	34567000	+	0	NA	intron (NM_080476, intron 11 of 11)	MIRb|SINE|MIR	8032	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
19980	chr1	184973421	184974720	+	0	NA	intron (NM_052966, intron 1 of 13)	CpG	438	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
199908	chr6	127869201	127869400	+	0	NA	intron (NM_001164687, intron 1 of 5).2	MER47B|DNA|TcMar-Tigger	-14112	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
134861	chr2	148711551	148712000	+	0	NA	intron (NM_015630, intron 2 of 13)	L1MCa|LINE|L1	67024	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
74870	chr15	63562471	63562630	+	0	NA	intron (NR_046342, intron 8 of 15)	intron (NR_046342, intron 8 of 15)	-34837	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
28115	chr10	43403751	43404200	+	0	NA	intron (NM_001098204, intron 1 of 3)	AluJb|SINE|Alu	3876	NM_001098206	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
131085	chr2	88919451	88919550	+	0	NA	Intergenic	Intergenic	107130	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
36445	chr11	5627001	5627400	+	0	NA	intron (NM_021616, intron 1 of 7)	AluSq|SINE|Alu	2199	NM_021616	53840		NM_021616	ENSG00000258659	TRIM34	IFP1|RNF21	tripartite motif containing 34	protein-coding
134605	chr2	144378821	144379280	+	0	NA	Intergenic	Intergenic	-45981	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
34728	chr10	133667551	133667930	+	0	NA	Intergenic	CpG	-40945	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
70209	chr14	100568521	100569030	+	0	NA	promoter-TSS (NM_001159531)	promoter-TSS (NM_001159531)	202	NM_001385092	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
90106	chr16	90057651	90058250	+	0	NA	3' UTR (NM_001098173, exon 11 of 11)	3' UTR (NM_001098173, exon 11 of 11)	-10167	NR_027336	100130015		NR_027335	ENSG00000290738	URAHP	URAH	urate (hydroxyiso-) hydrolase, pseudogene	pseudo
189287	chr5	172108651	172108950	+	0	NA	intron (NM_005990, intron 4 of 18)	AluSx|SINE|Alu	79424	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
151672	chr22	17097751	17097850	+	0	NA	exon (NM_001289905, exon 3 of 12)	exon (NM_001289905, exon 3 of 12)	12800	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
125144	chr2	9984171	9984750	+	0	NA	intron (NM_198182, intron 8 of 15)	intron (NM_198182, intron 8 of 15)	32767	NM_198182	29841		NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
80583	chr16	2877321	2877780	+	0	NA	Intergenic	AluJb|SINE|Alu	-5645	NM_001142500	114984		NM_138439	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
196145	chr6	42440771	42442230	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	10551	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
134955	chr2	151826571	151827130	+	0	NA	intron (NM_177985, intron 1 of 5)	intron (NM_177985, intron 1 of 5)	1571	NM_012097	26225		NM_012097	ENSG00000162980	ARL5A	ARFLP5|ARL5	ADP ribosylation factor like GTPase 5A	protein-coding
138015	chr2	201272001	201272330	+	0	NA	intron (NM_001228, intron 5 of 9)	(TG)n|Simple_repeat|Simple_repeat	11629	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
79474	chr16	745471	745830	+	0	NA	Intergenic	AluSq|SINE|Alu	-4653	NM_001304799	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
23834	chr1	234603671	234604200	+	0	NA	TTS (NM_001077397)	TTS (NM_001077397)	5590	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
22354	chr1	214631721	214632380	+	0	NA	intron (NM_016343, intron 9 of 19)	L1ME3G|LINE|L1	28855	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
47897	chr12	6746771	6747400	+	0	NA	TTS (NM_005439)	TTS (NM_005439)	5831	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
77596	chr15	85257421	85258180	+	0	NA	Intergenic	MIR3|SINE|MIR	17449	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
73794	chr15	48177901	48178600	+	0	NA	promoter-TSS (NM_016132)	promoter-TSS (NM_016132)	45	NR_125408	50804		NM_016132	ENSG00000104177	MYEF2	HsT18564|MEF-2|MST156|MSTP156|myEF-2	myelin expression factor 2	protein-coding
41944	chr11	67308701	67309500	+	0	NA	intron (NM_017857, intron 10 of 13)	intron (NM_017857, intron 10 of 13)	5570	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
197755	chr6	87197271	87198100	+	0	NA	intron (NM_015021, intron 1 of 7)	AluSx1|SINE|Alu	42120	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
192632	chr6	26131021	26131580	+	0	NA	Intergenic	AluSz|SINE|Alu	7128	NM_003512	8334		NM_003512	ENSG00000180573	H2AC6	H2A/l|H2AFL|HIST1H2AC|dJ221C16.4	H2A clustered histone 6	protein-coding
193061	chr6	28684121	28684480	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-29825	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
59767	chr13	30145571	30146030	+	0	NA	Intergenic	Intergenic	7274	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
69465	chr14	95059271	95059430	+	0	NA	Intergenic	MER41G|LTR|ERV1	74153	NM_001195573	23405		NM_030621	ENSG00000100697	DICER1	DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2|aviD	dicer 1, ribonuclease III	protein-coding
127807	chr2	44520121	44520200	+	0	NA	intron (NM_024766, intron 3 of 10)	AluY|SINE|Alu	158213	NM_024766	79823		NM_024766	ENSG00000143919	CAMKMT	C2orf34|CLNMT|CaM KMT|Cam|KMT	calmodulin-lysine N-methyltransferase	protein-coding
70925	chr14	104300851	104301050	+	0	NA	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	77366	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
25305	chr10	6208251	6208350	+	0	NA	intron (NM_001314063, intron 1 of 15)	AluJr|SINE|Alu	5368	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
44058	chr11	95234521	95234980	+	0	NA	TTS (NR_110295)	TTS (NR_110295)	-2275	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
176483	chr4	89838151	89838250	+	0	NA	intron (NR_045481, intron 1 of 3)	(CACA)n|Simple_repeat|Simple_repeat	104	NR_164674	6622		NM_000345	ENSG00000145335	SNCA	NACP|PARK1|PARK4|PD1	synuclein alpha	protein-coding
167369	chr3	128785201	128785730	+	0	NA	intron (NM_004637, intron 1 of 5)	7SLRNA|srpRNA|srpRNA	59282	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
224634	chr9	20602551	20602850	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	19238	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
164316	chr3	57747471	57747630	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-8759	NM_001377549	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
64894	chr14	35392071	35392330	+	0	NA	Intergenic	Intergenic	12549	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
42874	chr11	73312751	73313050	+	0	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	-3539	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
150674	chr21	43456401	43457250	+	0	NA	Intergenic	CpG	10224	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
28476	chr10	49518971	49519430	+	0	NA	intron (NM_170753, intron 1 of 1)	intron (NM_170753, intron 1 of 1)	5081	NM_170753	267004		NM_170753		PGBD3	-	piggyBac transposable element derived 3	protein-coding
221381	chr8	123392751	123393000	+	0	NA	intron (NM_014109, intron 1 of 27)	L2a|LINE|L2	3572	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
165590	chr3	101595371	101595950	+	0	NA	Intergenic	L3|LINE|CR1	21480	NM_020357	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
144129	chr20	34007701	34007900	+	0	NA	intron (NM_016732, intron 1 of 9)	AluSq2|SINE|Alu	-13433	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
177767	chr4	122711921	122712280	+	0	NA	Intergenic	Ricksha_c|DNA|MULE-MuDR	20358	NR_024041	729338		NR_024041		CETN4P	-	centrin 4, pseudogene	pseudo
135747	chr2	169563601	169563800	+	0	NA	intron (NM_001322048, intron 2 of 13)	L1MC5a|LINE|L1	10165	NM_024622	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
205749	chr7	23506571	23507780	+	0	NA	intron (NM_013293, intron 5 of 7)	AluSz6|SINE|Alu	16787	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
69490	chr14	95504371	95504980	+	0	NA	intron (NM_001384283, intron 1 of 9)	intron (NM_001384283, intron 1 of 9)	-4135	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
77981	chr15	89411121	89412080	+	0	NA	intron (NR_160724, intron 2 of 2)	CpG	11429	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
62584	chr13	99990201	99990400	+	0	NA	Intergenic	Intergenic	7609	NR_047483	100861542		NR_047483	ENSG00000260738	LINC00554	lncZic2	long intergenic non-protein coding RNA 554	ncRNA
188592	chr5	157170421	157170680	+	0	NA	Intergenic	MER11B|LTR|ERVK	-4286	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
214931	chr7	151560151	151560450	+	0	NA	intron (NM_016203, intron 15 of 15)	intron (NM_016203, intron 15 of 15)	-40405	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
173474	chr4	8969021	8969480	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-97411	NM_001306142	3166		NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
233836	chrX	1497601	1497850	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	39460	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
195481	chr6	37101171	37101600	+	0	NA	Intergenic	Intergenic	-68767	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
106571	chr18	21740371	21742150	+	0	NA	5' UTR (NM_020774, exon 1 of 21)	5' UTR (NM_020774, exon 1 of 21)	468	NM_020774	57534		NM_020774	ENSG00000101752	MIB1	DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6	MIB E3 ubiquitin protein ligase 1	protein-coding
216070	chr8	10590021	10590450	+	0	NA	Intergenic	Intergenic	64703	NM_001197020	203074		NM_198464	ENSG00000184647	PRSS55	CT153|T-SP1|TSP1|UNQ9391	serine protease 55	protein-coding
26162	chr10	14378621	14378880	+	0	NA	Intergenic	LTR45B|LTR|ERV1	4527	NR_036181	100422843		NR_036181	ENSG00000266321	MIR4293	-	microRNA 4293	ncRNA
202312	chr6	157273071	157274000	+	0	NA	Intergenic	Intergenic	49984	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
156998	chr22	42511101	42512080	+	0	NA	3' UTR (NM_015703, exon 7 of 7)	3' UTR (NM_015703, exon 7 of 7)	8206	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
116918	chr19	18793151	18793450	+	0	NA	Intergenic	L2b|LINE|L2	-1995	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
233511	chrM	1301	1900	+	0	NA	Intergenic	Intergenic	5914	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
228311	chr9	98158551	98158980	+	0	NA	intron (NM_052820, intron 1 of 11)	L2b|LINE|L2	14127	NM_003389	7464		NM_003389	ENSG00000106789	CORO2A	CLIPINB|IR10|WDR2	coronin 2A	protein-coding
97836	chr17	44936051	44936750	+	0	NA	intron (NM_001264573, intron 1 of 14)	intron (NM_001264573, intron 1 of 14)	-1719	NR_106841	102466734		NR_106841	ENSG00000278223	MIR6783	hsa-mir-6783	microRNA 6783	ncRNA
6043	chr1	27121251	27121550	+	0	NA	intron (NM_003047, intron 1 of 11)	MIR3|SINE|MIR	33725	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
11681	chr1	91834401	91834800	+	0	NA	intron (NR_036634, intron 2 of 17)	L2a|LINE|L2	51551	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
63770	chr14	21254021	21255030	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	14917	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
15689	chr1	150977151	150978230	+	0	NA	Intergenic	Intergenic	-2687	NM_181746	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
40958	chr11	65350051	65350350	+	0	NA	intron (NM_001330308, intron 11 of 11)	intron (NM_001330308, intron 11 of 11)	-4551	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
83867	chr16	28912871	28913230	+	0	NA	intron (NM_024816, intron 5 of 12)	AluSp|SINE|Alu	12188	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
223253	chr8	143682121	143682750	+	0	NA	Intergenic	LTR27|LTR|ERV1	-2044	NM_001100599	286075		NM_173831	ENSG00000181135	ZNF707	-	zinc finger protein 707	protein-coding
84617	chr16	30697851	30699700	+	0	NA	promoter-TSS (NM_001256932)	promoter-TSS (NM_001256932)	285	NR_144637	730183		NM_001256932	ENSG00000261840	LOC730183	-	uncharacterized LOC730183	ncRNA
177510	chr4	118277201	118277800	+	0	NA	Intergenic	AluJb|SINE|Alu	-1262	NR_034010	100093630		NR_003584	ENSG00000269893	SNHG8	LINC00060|NCRNA00060	small nucleolar RNA host gene 8	ncRNA
92008	chr17	7453521	7453950	+	0	NA	intron (NM_000747, intron 7 of 10)	AluJo|SINE|Alu	8674	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
1506	chr1	2789001	2789200	+	0	NA	intron (NM_001242672, intron 2 of 7)	AluSz|SINE|Alu	11768	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
74025	chr15	52208271	52208880	+	0	NA	exon (NM_018728, exon 36 of 41)	exon (NM_018728, exon 36 of 41)	-17183	NM_016194	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
191863	chr6	15267451	15267750	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	18745	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
150773	chr21	43808151	43809050	+	0	NA	intron (NR_026961, intron 1 of 1)	intron (NR_026961, intron 1 of 1)	3967	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
51340	chr12	51388851	51388950	+	0	NA	intron (NM_007210, intron 2 of 11)	intron (NM_007210, intron 2 of 11)	-2417	NM_001267615	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
115175	chr19	14429451	14429550	+	0	NA	Intergenic	AluJo|SINE|Alu	-3806	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
224733	chr9	21688151	21688500	+	0	NA	Intergenic	Intergenic	-114311	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
98472	chr17	47181671	47181830	+	0	NA	intron (NR_148340, intron 1 of 16)	intron (NR_148340, intron 1 of 16)	7545	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
103499	chr17	78388521	78389050	+	0	NA	intron (NR_111989, intron 1 of 8)	intron (NR_111989, intron 1 of 8)	10136	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
233497	chr9	138159751	138159930	+	0	NA	intron (NR_027156, intron 1 of 4)	G-rich|Low_complexity|Low_complexity	9727	NR_027156	643224		NR_027156		TUBBP5	-	tubulin beta pseudogene 5	pseudo
171006	chr3	194736551	194736850	+	0	NA	intron (NR_037891, intron 1 of 3)	intron (NR_037891, intron 1 of 3)	28279	NR_037891	100507391		NR_037891	ENSG00000237222	LINC01968	-	long intergenic non-protein coding RNA 1968	ncRNA
77792	chr15	87597421	87597920	+	0	NA	Intergenic	L3|LINE|CR1	20741	NR_026869	145978		NM_152454	ENSG00000259527	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
174686	chr4	41963971	41964230	+	0	NA	Intergenic	AluSc|SINE|Alu	-17656	NM_001029955	285429		NM_001029955	ENSG00000182308	DCAF4L1	WDR21B	DDB1 and CUL4 associated factor 4 like 1	protein-coding
76269	chr15	74082021	74082680	+	0	NA	intron (NM_001038640, intron 1 of 17)	intron (NM_001038640, intron 1 of 17)	200	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
96166	chr17	39705501	39705700	+	0	NA	intron (NM_001382783, intron 2 of 27)	intron (NM_001382783, intron 2 of 27)	5536	NM_004448	2064		NM_004448	ENSG00000141736	ERBB2	CD340|HER-2|HER-2/neu|HER2|MLN 19|MLN-19|NEU|NGL|TKR1|VSCN2|c-ERB-2|c-ERB2|p185(erbB2)	erb-b2 receptor tyrosine kinase 2	protein-coding
27832	chr10	38355821	38357350	+	0	NA	intron (NR_003086, intron 1 of 7)	CpG	205	NR_003086	158160		NM_182829	ENSG00000290439	HSD17B7P2	HSD17B7|Hsd17b_2|bA291L22.1	hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2	pseudo
1734	chr1	5976701	5977100	+	0	NA	intron (NM_001291594, intron 1 of 25)	intron (NM_001291594, intron 1 of 25)	15525	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
180240	chr5	1608121	1608880	+	0	NA	intron (NR_003713, intron 2 of 3)	intron (NR_003713, intron 2 of 3)	-13969	NR_003263	728609		NR_003263	ENSG00000291055	SDHAP3	SDHACL|SDHAL	SDHA pseudogene 3	pseudo
95234	chr17	35315951	35316050	+	0	NA	Intergenic	L1MC1|LINE|L1	57621	NM_001376010	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
213239	chr7	133873301	133873700	+	0	NA	intron (NM_021807, intron 11 of 17)	intron (NM_021807, intron 11 of 17)	-48612	NR_120513	101928861		NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
57556	chr12	122209351	122209650	+	0	NA	TTS (NM_001330492)	TTS (NM_001330492)	5791	NM_030765	79369		NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
334	chr1	995751	996680	+	0	NA	Intergenic	Intergenic	3882	NM_021170	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
53754	chr12	68664451	68664950	+	0	NA	3' UTR (NM_015646, exon 8 of 8)	3' UTR (NM_015646, exon 8 of 8)	22159	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
121211	chr19	46612021	46613050	+	0	NA	Intergenic	MIRb|SINE|MIR	10463	NM_001329922	808		NM_005184	ENSG00000160014	CALM3	CALM|CAM1|CAM2|CAMB|CPVT6|CaM|CaMIII|HEL-S-72|LQT16|PHKD|PHKD3	calmodulin 3	protein-coding
59949	chr13	31209271	31209680	+	0	NA	intron (NM_194318, intron 1 of 14)	intron (NM_194318, intron 1 of 14)	9500	NM_194318	145173		NM_194318	ENSG00000187676	B3GLCT	B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	beta 3-glucosyltransferase	protein-coding
134348	chr2	136124921	136126150	+	0	NA	Intergenic	Intergenic	-7386	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
238855	chrX	154484651	154485150	+	0	NA	3' UTR (NM_014235, exon 4 of 4)	3' UTR (NM_014235, exon 4 of 4)	1715	NM_014235	8266		NM_014235	ENSG00000102178	UBL4A	DX254E|DXS254E|G6PD|GDX|GET5|MDY2|TMA24|UBL4	ubiquitin like 4A	protein-coding
66607	chr14	63650121	63651380	+	0	NA	Intergenic	Intergenic	-8879	NM_001382426	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
232984	chr9	136982271	136982580	+	0	NA	promoter-TSS (NM_207510)	promoter-TSS (NM_207510)	-568	NM_207510	401562		NM_207510	ENSG00000214402	LCNL1	-	lipocalin like 1	protein-coding
222067	chr8	130322551	130323050	+	0	NA	intron (NM_001362924, intron 3 of 30)	L2c|LINE|L2	-26267	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
67932	chr14	74761801	74762000	+	0	NA	Intergenic	AluSg|SINE|Alu	-1416	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
14919	chr1	147494971	147495400	+	0	NA	intron (NR_038423, intron 3 of 3)	intron (NR_038423, intron 3 of 3)	22690	NR_038423	100289211		NR_038423	ENSG00000278811	LINC00624	-	long intergenic non-protein coding RNA 624	ncRNA
214759	chr7	151074301	151075100	+	0	NA	exon (NM_003040, exon 19 of 23)	exon (NM_003040, exon 19 of 23)	6109	NM_006712	10922		NM_006712	ENSG00000164896	FASTK	FAST	Fas activated serine/threonine kinase	protein-coding
148575	chr21	5023821	5024100	+	0	NA	intron (NM_001283050, intron 1 of 6).2	intron (NM_001283050, intron 1 of 6).2	1406	NM_001283050	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
180573	chr5	14741771	14742380	+	0	NA	intron (NM_054027, intron 7 of 11)	intron (NM_054027, intron 7 of 11)	29381	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
132528	chr2	106146951	106147250	+	0	NA	intron (NR_165308, intron 5 of 14)	AluSz6|SINE|Alu	-8219	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
128281	chr2	54592671	54592830	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	34356	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
102282	chr17	75315801	75316000	+	0	NA	Intergenic	Intergenic	-26451	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
45280	chr11	118041921	118042380	+	0	NA	intron (NM_001354434, intron 2 of 5)	L1MB7|LINE|L1	-34862	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
20094	chr1	186618271	186618650	+	0	NA	Intergenic	Intergenic	61963	NM_000963	5743		NM_000963	ENSG00000073756	PTGS2	COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2	prostaglandin-endoperoxide synthase 2	protein-coding
200848	chr6	138405551	138405850	+	0	NA	intron (NM_014320, intron 2 of 3)	intron (NM_014320, intron 2 of 3)	1477	NM_014320	23593		NM_014320	ENSG00000051620	HEBP2	C6ORF34B|C6orf34|PP23|SOUL	heme binding protein 2	protein-coding
102913	chr17	76566371	76566880	+	0	NA	intron (NM_006456, intron 8 of 8)	AluJb|SINE|Alu	4992	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
95452	chr17	36153771	36154230	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	22578	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
23140	chr1	226710921	226711600	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	27915	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
43673	chr11	85774421	85775280	+	0	NA	intron (NM_032943, intron 1 of 18)	MIR3|SINE|MIR	-16781	NM_001162953	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
181676	chr5	50442521	50443100	+	0	NA	Intergenic	Intergenic	-1522	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
105724	chr18	2715601	2716030	+	0	NA	intron (NM_015295, intron 17 of 47)	AluJr|SINE|Alu	60089	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
17122	chr1	156167501	156167700	+	0	NA	intron (NM_001370567, intron 9 of 13)	L1MC5|LINE|L1	13052	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
144994	chr20	37442021	37442280	+	0	NA	Intergenic	Intergenic	78153	NM_001317075	10904		NM_006698	ENSG00000166619	BLCAP	BC10	BLCAP apoptosis inducing factor	protein-coding
238961	chrX	155144071	155144430	+	0	NA	Intergenic	L1MEg|LINE|L1	-52757	NM_001303544	7411		NM_003372	ENSG00000155959	VBP1	HIBBJ46|PFD3|PFDN3|VBP-1	VHL binding protein 1	protein-coding
8656	chr1	41806501	41807900	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	111722	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
158792	chr3	9648071	9648230	+	0	NA	Intergenic	L1MC5a|LINE|L1	-1355	NM_001077526	64419		NM_022485	ENSG00000163719	MTMR14	C3orf29	myotubularin related protein 14	protein-coding
118712	chr19	38225471	38225630	+	0	NA	intron (NM_001363579, intron 1 of 11)	AluJr|SINE|Alu	-1328	NM_004647	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
70717	chr14	103340201	103340400	+	0	NA	intron (NM_001969, intron 10 of 11)	intron (NM_001969, intron 10 of 11)	2451	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
50187	chr12	46157671	46158030	+	0	NA	Intergenic	Intergenic	108666	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
148462	chr20	64032951	64033680	+	0	NA	promoter-TSS (NM_001348090)	promoter-TSS (NM_001348090)	-412	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
130906	chr2	87462221	87462500	+	0	NA	intron (NR_024206, intron 1 of 1)	ORSL|DNA|hAT-Tip100	6933	NR_024206	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
161181	chr3	39129671	39129830	+	0	NA	intron (NR_159496, intron 14 of 28)	intron (NR_159496, intron 14 of 28)	-8456	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
173102	chr4	6330771	6331430	+	0	NA	intron (NM_001206995, intron 8 of 9)	intron (NM_001206995, intron 8 of 9)	50768	NM_181876	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
101446	chr17	67442751	67443330	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-28449	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
224116	chr9	4660971	4661130	+	0	NA	intron (NM_001353491, intron 2 of 14)	L1PA5|LINE|L1	1173	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
124610	chr2	985401	986000	+	0	NA	intron (NM_018968, intron 1 of 16)	intron (NM_018968, intron 1 of 16)	-34308	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
167063	chr3	126981871	126985230	+	0	NA	Intergenic	CpG	-5044	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
10019	chr1	55235871	55236030	+	0	NA	Intergenic	Intergenic	10309	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA
227169	chr9	86947521	86948100	+	0	NA	promoter-TSS (NM_002048)	promoter-TSS (NM_002048)	-304	NM_002048	2619		NM_002048	ENSG00000180447	GAS1	-	growth arrest specific 1	protein-coding
85987	chr16	57440071	57440230	+	0	NA	intron (NM_001308358, intron 2 of 7)	MER11B|LTR|ERVK	7235	NM_020313	57019		NM_020313	ENSG00000005194	CIAPIN1	Anamorsin|CIAE2|DRE2|PRO0915	cytokine induced apoptosis inhibitor 1	protein-coding
39576	chr11	61158571	61159030	+	0	NA	intron (NM_017966, intron 1 of 4)	intron (NM_017966, intron 1 of 4)	2626	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
105623	chr18	803221	803680	+	0	NA	intron (NM_005433, intron 1 of 11)	intron (NM_005433, intron 1 of 11)	8792	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
168111	chr3	138686651	138687350	+	0	NA	intron (NM_006219, intron 16 of 23)	intron (NM_006219, intron 16 of 23)	20621	NM_001256045	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
111782	chr19	4439671	4440030	+	0	NA	intron (NM_005483, intron 13 of 14)	AluJo|SINE|Alu	-6128	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
230150	chr9	127749221	127749750	+	0	NA	exon (NM_001142534, exon 3 of 10)	exon (NM_001142534, exon 3 of 10)	5797	NM_001142534	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
225272	chr9	34413271	34413530	+	0	NA	intron (NM_001184942, intron 1 of 5)	intron (NM_001184942, intron 1 of 5)	-15590	NM_032596	84688		NM_032596	ENSG00000164972	SPMIP6	C9orf24|CBE1|NYD-SP22|SMRP1|bA573M23.4	sperm microtubule inner protein 6	protein-coding
130656	chr2	86193301	86193500	+	0	NA	promoter-TSS (NR_039939)	promoter-TSS (NR_039939)	-292	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
24994	chr10	3138001	3138400	+	0	NA	intron (NR_144641, intron 26 of 26)	CpG	-3401	NR_038284	100507034		NR_038284	ENSG00000237399	PITRM1-AS1	-	PITRM1 antisense RNA 1	ncRNA
156966	chr22	42399671	42400030	+	0	NA	intron (NM_001318323, intron 2 of 4)	intron (NM_001318323, intron 2 of 4)	-30642	NR_120595	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
131553	chr2	96769371	96769730	+	0	NA	intron (NM_020184, intron 1 of 6)	AluSx1|SINE|Alu	8648	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
122264	chr19	49054901	49055200	+	0	NA	intron (NM_033142, intron 3 of 4)	intron (NM_033142, intron 3 of 4)	2699	NM_033142	94027		NM_033142	ENSG00000196337	CGB7	CG-beta-a|CGB6	chorionic gonadotropin subunit beta 7	protein-coding
127586	chr2	42800521	42800980	+	0	NA	Intergenic	LTR50|LTR|ERVL	-8167	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
212502	chr7	128655651	128656550	+	0	NA	non-coding (NR_024368, exon 5 of 5)	non-coding (NR_024368, exon 5 of 5)	14859	NR_024368	402483		NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
208554	chr7	70829121	70829430	+	0	NA	Intergenic	Intergenic	-302869	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
128000	chr2	46984621	46985730	+	0	NA	intron (NM_020458, intron 5 of 19)	(CTTCCT)n|Simple_repeat|Simple_repeat	-43320	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
37494	chr11	18402171	18402680	+	0	NA	intron (NM_005566, intron 4 of 7)	AluJr4|SINE|Alu	6159	NM_001165414	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
36558	chr11	6626121	6626380	+	0	NA	exon (NM_003737, exon 16 of 21)	exon (NM_003737, exon 16 of 21)	-6828	NM_000391	1200		NM_000391	ENSG00000166340	TPP1	CLN2|GIG1|LPIC|SCAR7|TPP-1	tripeptidyl peptidase 1	protein-coding
25456	chr10	6606801	6607650	+	0	NA	Intergenic	MIR3|SINE|MIR	-11491	NR_120634	101928150		NR_120634		LINC02648	-	long intergenic non-protein coding RNA 2648	ncRNA
190385	chr5	179789721	179790750	+	0	NA	Intergenic	L1M4|LINE|L1	-3751	NM_145867	4056		NM_000897	ENSG00000213316	LTC4S	-	leukotriene C4 synthase	protein-coding
72089	chr15	28914821	28915700	+	0	NA	intron (NM_001379685, intron 2 of 15)	(AC)n|Simple_repeat|Simple_repeat	-6377	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
220953	chr8	109527001	109527200	+	0	NA	intron (NM_177531, intron 77 of 77)	intron (NM_177531, intron 77 of 77)	-12600	NM_198120	9166		NM_004215	ENSG00000147654	EBAG9	EB9|PDAF	estrogen receptor binding site associated antigen 9	protein-coding
74395	chr15	58922821	58924330	+	0	NA	intron (NR_135043, intron 1 of 18)	intron (NR_135043, intron 1 of 18)	10104	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
212935	chr7	130931471	130931650	+	0	NA	Intergenic	Intergenic	18096	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
24068	chr1	235314951	235315300	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-12091	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
87500	chr16	71810601	71810800	+	0	NA	Intergenic	MIRc|SINE|MIR	-1866	NM_001128	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
227010	chr9	83707401	83709280	+	0	NA	promoter-TSS (NM_013438)	promoter-TSS (NM_013438)	9	NR_135840	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
139625	chr2	225270901	225271130	+	0	NA	Intergenic	Intergenic	-128695	NM_001371273	57624		NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding
118441	chr19	35855521	35855780	+	0	NA	Intergenic	Intergenic	-1261	NM_199180	84063		NM_032123	ENSG00000126259	KIRREL2	FILTRIN|NEPH3|NLG1	kirre like nephrin family adhesion molecule 2	protein-coding
127978	chr2	46877721	46878280	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	37806	NM_001171509	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
68683	chr14	90381471	90381630	+	0	NA	Intergenic	MIRc|SINE|MIR	-14952	NM_001363669	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
6111	chr1	27336751	27336850	+	0	NA	TTS (NM_032125)	TTS (NM_032125)	-5222	NM_032872	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
179971	chr5	851151	851450	+	0	NA	promoter-TSS (NM_024786)	promoter-TSS (NM_024786)	-314	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
192083	chr6	16671901	16672100	+	0	NA	intron (NM_000332, intron 3 of 8)	MER5A|DNA|hAT-Charlie	88184	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
12787	chr1	109772171	109772730	+	0	NA	Intergenic	L3|LINE|CR1	-8527	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
699	chr1	1403751	1404430	+	0	NA	intron (NM_001318485, intron 3 of 3)	AluSx|SINE|Alu	3203	NM_017971	55052		NM_017971	ENSG00000242485	MRPL20	L20mt|MRP-L20|bL20m	mitochondrial ribosomal protein L20	protein-coding
13302	chr1	113369071	113369230	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-21365	NM_001142782	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
217702	chr8	30132951	30133050	+	0	NA	intron (NM_001100916, intron 2 of 2)	intron (NM_001100916, intron 2 of 2)	11665	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
81445	chr16	8873401	8874100	+	0	NA	Intergenic	Intergenic	-4738	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
106820	chr18	23997651	23998250	+	0	NA	intron (NR_110796, intron 5 of 5)	intron (NR_110796, intron 5 of 5)	5063	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
823	chr1	1568471	1569150	+	0	NA	intron (NM_014188, intron 1 of 4)	AluJr|SINE|Alu	6053	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
74360	chr15	58699951	58700050	+	0	NA	intron (NM_001320570, intron 2 of 14)	L1MA4A|LINE|L1	-6393	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
113809	chr19	10582821	10583080	+	0	NA	intron (NM_001300887, intron 3 of 11)	AluSz|SINE|Alu	4362	NM_005498	10053		NM_005498	ENSG00000129354	AP1M2	AP1-mu2|HSMU1B|MU-1B|MU1B|mu2	adaptor related protein complex 1 subunit mu 2	protein-coding
220603	chr8	100914711	100915400	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	35516	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
207425	chr7	44486901	44487500	+	0	NA	intron (NM_015332, intron 1 of 5)	intron (NM_015332, intron 1 of 5)	3458	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
122786	chr19	50327151	50327450	+	0	NA	intron (NM_001372305, intron 1 of 4)	intron (NM_001372305, intron 1 of 4)	1771	NM_001372305	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
46152	chr11	123055451	123057200	+	0	NA	Intergenic	AluJb|SINE|Alu	1831	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
183940	chr5	87414821	87415080	+	0	NA	Intergenic	Intergenic	-1917	NM_001363539	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
9569	chr1	51768001	51768350	+	0	NA	intron (NM_024586, intron 12 of 23)	AluY|SINE|Alu	38325	NM_001350210	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
221506	chr8	124592621	124593630	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	54002	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
13971	chr1	120525371	120525680	+	0	NA	intron (NR_144516, intron 22 of 43)	intron (NR_144516, intron 22 of 43)	-33160	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
146053	chr20	47365071	47365430	+	0	NA	Intergenic	L2a|LINE|L2	-8361	NM_001281769	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
4190	chr1	19436701	19437450	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	47220	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
50389	chr12	47269951	47270250	+	0	NA	Intergenic	MER34A|LTR|ERV1	37299	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
92173	chr17	7711221	7711880	+	0	NA	TTS (NM_001406)	TTS (NM_001406)	-6194	NM_020877	146754		NM_020877	ENSG00000183914	DNAH2	DNAHC2|DNHD3|SPGF45	dynein axonemal heavy chain 2	protein-coding
35885	chr11	2398351	2399190	+	0	NA	Intergenic	Intergenic	-1980	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
20968	chr1	202488201	202488480	+	0	NA	intron (NM_032103, intron 1 of 11)	MER44B|DNA|TcMar-Tigger	25626	NM_032104	4660		NM_002481	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1 regulatory subunit 12B	protein-coding
183696	chr5	80846501	80846900	+	0	NA	intron (NM_002439, intron 20 of 23)	L1PA5|LINE|L1	-113663	NM_006909	5924		NM_006909	ENSG00000113319	RASGRF2	GRF2|RAS-GRF2	Ras protein specific guanine nucleotide releasing factor 2	protein-coding
53274	chr12	63839401	63839630	+	0	NA	Intergenic	Intergenic	-5185	NM_001346201	57522		NM_020762	ENSG00000196935	SRGAP1	ARHGAP13|NMTC2	SLIT-ROBO Rho GTPase activating protein 1	protein-coding
52960	chr12	57466471	57466630	+	0	NA	intron (NM_001160045, intron 6 of 9)	ORSL|DNA|hAT-Tip100	6399	NM_001167609	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
86926	chr16	68090371	68091000	+	0	NA	intron (NM_173165, intron 1 of 9)	intron (NM_173165, intron 1 of 9)	5315	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
194928	chr6	35048701	35049100	+	0	NA	intron (NM_015245, intron 11 of 23)	intron (NM_015245, intron 11 of 23)	92439	NM_001366324	6954		NM_018679	ENSG00000124678	TCP11	D6S230E|FPPR	t-complex 11	protein-coding
205776	chr7	23538351	23538730	+	0	NA	Intergenic	FAM|SINE|Alu	-6499	NM_001282757	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
116692	chr19	18425451	18426650	+	0	NA	intron (NM_032627, intron 1 of 17)	intron (NM_032627, intron 1 of 17)	6652	NM_032627	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
19482	chr1	175004701	175005100	+	0	NA	intron (NM_001007214, intron 2 of 5)	intron (NM_001007214, intron 2 of 5)	4953	NM_014412	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
156612	chr22	41567171	41567330	+	0	NA	intron (NM_014460, intron 1 of 3)	intron (NM_014460, intron 1 of 3)	6240	NM_014460	27254		NM_014460	ENSG00000172346	CSDC2	PIPPIN|dJ347H13.2	cold shock domain containing C2	protein-coding
47698	chr12	6426861	6427880	+	0	NA	Intergenic	AluJb|SINE|Alu	-17585	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
7266	chr1	32364671	32365930	+	0	NA	TTS (NM_052841)	TTS (NM_052841)	2761	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
13748	chr1	116934751	116935250	+	0	NA	intron (NM_020440, intron 1 of 8)	L1MEg|LINE|L1	25084	NM_020440	5738		NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
210751	chr7	100677701	100678100	+	0	NA	intron (NM_005273, intron 7 of 9)	intron (NM_005273, intron 7 of 9)	4160	NM_005273	2783		NM_005273	ENSG00000172354	GNB2	HG2C1|SSS4|SSS4; NEDHYDF	G protein subunit beta 2	protein-coding
197114	chr6	57221421	57222850	+	0	NA	promoter-TSS (NM_001278668)	promoter-TSS (NM_001278668)	172	NM_016277	51715		NM_016277	ENSG00000112210	RAB23	HSPC137	RAB23, member RAS oncogene family	protein-coding
220704	chr8	101790921	101791200	+	0	NA	promoter-TSS (NM_032041)	promoter-TSS (NM_032041)	-91	NM_032041	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
21573	chr1	206469151	206469900	+	0	NA	promoter-TSS (NM_014002)	promoter-TSS (NM_014002)	-951	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
203085	chr6	166340221	166340800	+	0	NA	intron (NR_130113, intron 1 of 6)	L2a|LINE|L2	2035	NR_130113	113402		NM_145169	ENSG00000198818	SFT2D1	C6orf83|pRGR1	SFT2 domain containing 1	protein-coding
137728	chr2	197785101	197785300	+	0	NA	5' UTR (NM_001284361, exon 1 of 12)	5' UTR (NM_001284361, exon 1 of 12)	119	NM_001284361	66037		NM_033030	ENSG00000152430	BOLL	BOULE	boule homolog, RNA binding protein	protein-coding
52995	chr12	57506651	57506950	+	0	NA	intron (NM_004990, intron 11 of 20)	AluSx|SINE|Alu	-5888	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
158547	chr3	4292521	4292780	+	0	NA	Intergenic	Intergenic	-10654	NM_001276325	6419		NM_006515	ENSG00000170364	SETMAR	METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
133206	chr2	113156821	113158180	+	0	NA	Intergenic	CpG	-16471	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
183668	chr5	80487871	80489030	+	0	NA	intron (NM_205548, intron 1 of 5)	intron (NM_205548, intron 1 of 5)	350	NM_205548	167555		NM_205548	ENSG00000152380	FAM151B	UNQ9217	family with sequence similarity 151 member B	protein-coding
60161	chr13	40115901	40116330	+	0	NA	Intergenic	Intergenic	-65694	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
120352	chr19	43590701	43590900	+	0	NA	3' UTR (NM_001007561, exon 3 of 3)	3' UTR (NM_001007561, exon 3 of 3)	5335	NM_001007561	126298		NM_001007561	ENSG00000167378	IRGQ	FKSG27|IRGQ1	immunity related GTPase Q	protein-coding
80052	chr16	1969551	1969650	+	0	NA	TTS (NM_001348711)	TTS (NM_001348711)	-2453	NM_006453	10607		NM_006453	ENSG00000183751	TBL3	SAZD|UTP13	transducin beta like 3	protein-coding
188747	chr5	157555601	157556200	+	0	NA	intron (NM_033274, intron 3 of 22)	MLT1D|LTR|ERVL-MaLR	19875	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
110032	chr19	1457921	1458180	+	0	NA	exon (NM_001351273, exon 9 of 14)	exon (NM_001351273, exon 9 of 14)	5066	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
49837	chr12	32390651	32391050	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-8708	NM_001384126	121512		NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
44126	chr11	96076321	96076680	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-152393	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
169405	chr3	160785921	160786180	+	0	NA	intron (NM_139245, intron 1 of 3)	L1ME4b|LINE|L1	29819	NM_139245	151742		NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
79536	chr16	857551	858030	+	0	NA	intron (NR_147885, intron 10 of 11)	CpG	52347	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
33965	chr10	124646151	124646800	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-57553	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
94487	chr17	29282321	29282780	+	0	NA	intron (NM_020772, intron 2 of 3)	AluSg|SINE|Alu	11598	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
6860	chr1	31067071	31067230	+	0	NA	Intergenic	L1MB7|LINE|L1	-1433	NM_014676	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
48780	chr12	11653201	11654150	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	4001	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
172710	chr4	2795521	2796250	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	2800	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
197636	chr6	83536121	83536380	+	0	NA	Intergenic	Intergenic	23716	NM_001170423	167681		NM_153362	ENSG00000146250	PRSS35	C6orf158|dJ223E3.1	serine protease 35	protein-coding
80544	chr16	2783071	2783230	+	0	NA	TTS (NM_001385462)	TTS (NM_001385462)	4410	NM_001385462	260429		NM_152891	ENSG00000103355	PRSS33	EOS	serine protease 33	protein-coding
101479	chr17	67492121	67492930	+	0	NA	intron (NM_181671, intron 1 of 9)	MLT1D|LTR|ERVL-MaLR	-20940	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
231477	chr9	131358221	131358880	+	0	NA	Intergenic	AluSx|SINE|Alu	-15101	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
60868	chr13	45851501	45851930	+	0	NA	promoter-TSS (NM_198849)	promoter-TSS (NM_198849)	38	NM_198849	283514		NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
227237	chr9	89308421	89308680	+	0	NA	Intergenic	AluYj4|SINE|Alu	-2645	NM_001827	1164		NM_001827	ENSG00000123975	CKS2	CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding
135592	chr2	166686351	166686530	+	0	NA	Intergenic	L1PA5|LINE|L1	-192191	NM_002976	6332		NM_002976	ENSG00000136546	SCN7A	NaG|Nav2.1|Nav2.2|SCN6A	sodium voltage-gated channel alpha subunit 7	protein-coding
41983	chr11	67378751	67378850	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-4623	NM_001166212	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
158825	chr3	9751901	9752300	+	0	NA	intron (NM_016827, intron 3 of 3)	intron (NM_016827, intron 3 of 3)	2156	NM_016820	4968		NM_002542	ENSG00000114026	OGG1	HMMH|HOGG1|MUTM|OGH1	8-oxoguanine DNA glycosylase	protein-coding
98734	chr17	48026421	48027100	+	0	NA	intron (NM_016429, intron 8 of 8)	intron (NM_016429, intron 8 of 8)	-6122	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
33990	chr10	124671671	124672530	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-31928	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
109121	chr18	80130351	80130880	+	0	NA	intron (NM_014913, intron 2 of 3)	intron (NM_014913, intron 2 of 3)	-17309	NR_028339	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
172567	chr4	2424251	2424550	+	0	NA	intron (NM_001193282, intron 1 of 15)	AluSq2|SINE|Alu	5445	NM_001193282	402160		NM_001193282	ENSG00000206113	CFAP99	-	cilia and flagella associated protein 99	protein-coding
181649	chr5	50364471	50364830	+	0	NA	Intergenic	AluSx|SINE|Alu	76638	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
192389	chr6	24766021	24766280	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8787	NM_001251990	51053		NM_015895	ENSG00000112312	GMNN	Gem|MGORS6	geminin DNA replication inhibitor	protein-coding
150120	chr21	37477521	37478000	+	0	NA	intron (NM_130436, intron 2 of 10)	intron (NM_130436, intron 2 of 10)	57461	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
221887	chr8	128554601	128555730	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	9514	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
84952	chr16	31362771	31363530	+	0	NA	intron (NM_000887, intron 13 of 29)	intron (NM_000887, intron 13 of 29)	7974	NM_000887	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
210939	chr7	101251651	101253100	+	0	NA	Intergenic	CpG	-7294	NM_016068	51024		NM_016068	ENSG00000214253	FIS1	CGI-135|TTC11	fission, mitochondrial 1	protein-coding
88567	chr16	85552901	85553800	+	0	NA	Intergenic	CpG	-58059	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
164537	chr3	63947601	63948400	+	0	NA	intron (NM_001177387, intron 3 of 12)	L2b|LINE|L2	-19794	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
127034	chr2	37154251	37155380	+	0	NA	intron (NM_002759, intron 1 of 16)	AluSq2|SINE|Alu	2165	NM_001135651	5610		NM_002759	ENSG00000055332	EIF2AK2	DYT33|EIF2AK1|LEUDEN|PKR|PPP1R83|PRKR	eukaryotic translation initiation factor 2 alpha kinase 2	protein-coding
117354	chr19	19543871	19544030	+	0	NA	exon (NM_153221, exon 8 of 8)	exon (NM_153221, exon 8 of 8)	5685	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
127301	chr2	38754671	38755450	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3566	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
179308	chr4	177399601	177399800	+	0	NA	Intergenic	Intergenic	42737	NM_000027	175		NM_000027	ENSG00000038002	AGA	AGU|ASRG|GA	aspartylglucosaminidase	protein-coding
171494	chr3	196597901	196599150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-29851	NM_001345913	348793		NM_182627	ENSG00000185798	WDR53	-	WD repeat domain 53	protein-coding
40241	chr11	63611951	63612250	+	0	NA	intron (NM_007069, intron 1 of 3)	AluSp|SINE|Alu	2337	NM_007069	11145		NM_007069	ENSG00000176485	PLAAT3	AdPLA|FPLD9|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3	phospholipase A and acyltransferase 3	protein-coding
34144	chr10	128053421	128053680	+	0	NA	intron (NM_001323357, intron 3 of 16)	intron (NM_001323357, intron 3 of 16)	5938	NM_001323357	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
189051	chr5	170065471	170065630	+	0	NA	intron (NR_156756, intron 45 of 52)	THE1B|LTR|ERVL-MaLR	37062	NR_039609	100616498		NR_039609	ENSG00000263831	MIR378E	mir-378e	microRNA 378e	ncRNA
162233	chr3	47145521	47145780	+	0	NA	intron (NR_146158, intron 1 of 21)	Tigger4b|DNA|TcMar-Tigger	18463	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
75904	chr15	70024601	70024880	+	0	NA	Intergenic	Intergenic	54728	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
20324	chr1	197655751	197655850	+	0	NA	intron (NR_125340, intron 6 of 19)	AluY|SINE|Alu	119680	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
49014	chr12	14242821	14243080	+	0	NA	Intergenic	AluY|SINE|Alu	-122682	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
63250	chr13	113942671	113943380	+	0	NA	Intergenic	Intergenic	-14034	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
199899	chr6	127858621	127859350	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-3797	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
146359	chr20	49264651	49265150	+	0	NA	intron (NM_021035, intron 4 of 13)	intron (NM_021035, intron 4 of 13)	13157	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
228817	chr9	111985901	111986280	+	0	NA	Intergenic	Intergenic	53990	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
99659	chr17	50716721	50716980	+	0	NA	Intergenic	Intergenic	-2715	NM_006107	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
174263	chr4	38107571	38107930	+	0	NA	intron (NM_015173, intron 15 of 19)	MIRc|SINE|MIR	-2431	NM_001253913	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
213167	chr7	132318701	132319550	+	0	NA	intron (NM_020911, intron 3 of 31)	intron (NM_020911, intron 3 of 31)	58264	NR_134565	101928807		NR_134565		LOC101928807	-	uncharacterized LOC101928807	ncRNA
45466	chr11	118565221	118566530	+	0	NA	promoter-TSS (NM_001168618)	promoter-TSS (NM_001168618)	56	NM_001168618	56912		NM_020153	ENSG00000118096	IFT46	C11orf2|C11orf60|CFAP32|FAP32	intraflagellar transport 46	protein-coding
111850	chr19	4583071	4583430	+	0	NA	Intergenic	Intergenic	-23566	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
140121	chr2	231525751	231526250	+	0	NA	intron (NM_006056, intron 2 of 2)	intron (NM_006056, intron 2 of 2)	4445	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
298	chr1	960201	961700	+	0	NA	intron (NM_198317, intron 1 of 11)	CpG-23	366	NM_198317	339451		NM_198317	ENSG00000187961	KLHL17	AF	kelch like family member 17	protein-coding
175003	chr4	51845801	51846180	+	0	NA	intron (NM_001287755, intron 1 of 10)	intron (NM_001287755, intron 1 of 10)	2411	NM_001287755	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
4015	chr1	18932521	18933000	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	23916	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
174405	chr4	39355001	39355730	+	0	NA	intron (NM_001204747, intron 1 of 24)	AluJo|SINE|Alu	10997	NM_002913	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
178088	chr4	140156651	140156980	+	0	NA	Intergenic	Intergenic	-2631	NM_018717	55534		NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3	mastermind like transcriptional coactivator 3	protein-coding
89208	chr16	88614651	88615350	+	0	NA	intron (NM_144604, intron 8 of 17)	intron (NM_144604, intron 8 of 17)	-23572	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
186521	chr5	138356921	138357200	+	0	NA	intron (NM_016604, intron 1 of 23)	AluJo|SINE|Alu	4375	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
41073	chr11	65505141	65505900	+	0	NA	promoter-TSS (NR_144569)	promoter-TSS (NR_144569)	-597	NR_144569	109136578		NR_144569	ENSG00000274072	MASCRNA	-	MALAT1-associated small cytoplasmic RNA	scRNA
160946	chr3	36907951	36909180	+	0	NA	intron (NM_001329998, intron 1 of 23)	intron (NM_001329998, intron 1 of 23)	36489	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
41286	chr11	65859001	65859900	+	0	NA	promoter-TSS (NM_001350283)	promoter-TSS (NM_001350283)	-983	NM_025128	80198		NM_025128	ENSG00000172732	MUS81	SLX3	MUS81 structure-specific endonuclease subunit	protein-coding
163279	chr3	50314571	50315080	+	0	NA	Intergenic	Intergenic	-2444	NM_153281	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
171018	chr3	195001971	195002280	+	0	NA	Intergenic	Intergenic	-92463	NR_104188	100874528		NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
84605	chr16	30670451	30672280	+	0	NA	TTS (NM_001105079)	TTS (NM_001105079)	12934	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
195866	chr6	41545371	41547100	+	0	NA	promoter-TSS (NR_126417)	promoter-TSS (NR_126417)	8	NR_126417	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
196334	chr6	43168401	43168800	+	0	NA	Intergenic	Intergenic	-2669	NM_003131	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
10428	chr1	65958751	65959200	+	0	NA	intron (NM_001037341, intron 3 of 16)	intron (NM_001037341, intron 3 of 16)	-33641	NM_001037340	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
166217	chr3	112084651	112084950	+	0	NA	Intergenic	Intergenic	-1535	NM_001171747	79669		NM_024616	ENSG00000114529	C3orf52	HYPT15|TTMP	chromosome 3 open reading frame 52	protein-coding
125335	chr2	10811051	10811350	+	0	NA	intron (NM_001282707, intron 1 of 13)	intron (NM_001282707, intron 1 of 13)	1585	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
115055	chr19	14152721	14152980	+	0	NA	exon (NM_014921, exon 19 of 23)	exon (NM_014921, exon 19 of 23)	15698	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
196001	chr6	42002551	42002880	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluY|SINE|Alu	46179	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
114453	chr19	12716871	12717430	+	0	NA	intron (NM_001382240, intron 5 of 25)	intron (NM_001382240, intron 5 of 25)	5109	NM_001382242	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
1555	chr1	3492651	3493150	+	0	NA	intron (NM_001409, intron 34 of 36)	intron (NM_001409, intron 34 of 36)	38235	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
217740	chr8	30725471	30726080	+	0	NA	intron (NM_001195104, intron 1 of 10)	AluSx|SINE|Alu	2071	NM_000637	2936		NM_000637	ENSG00000104687	GSR	GR|GSRD|HEL-75|HEL-S-122m	glutathione-disulfide reductase	protein-coding
142250	chr20	3159301	3160650	+	0	NA	promoter-TSS (NM_014948)	promoter-TSS (NM_014948)	-110	NM_001267584	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
239182	chrY	12554101	12554500	+	0	NA	Intergenic	Intergenic	-108067	NR_001545	64595		NR_001545	ENSG00000114374	TTTY15	NCRNA00138	testis expressed transcript, Y-linked 15	ncRNA
164308	chr3	57681271	57681430	+	0	NA	intron (NM_152678, intron 1 of 19)	AluY|SINE|Alu	11727	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
44739	chr11	111938671	111939130	+	0	NA	intron (NM_001037954, intron 1 of 19)	intron (NM_001037954, intron 1 of 19)	1557	NM_001037954	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
7788	chr1	36237421	36238280	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluSc8|SINE|Alu	13407	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
183902	chr5	87381151	87381450	+	0	NA	intron (NM_022650, intron 20 of 24)	MIRc|SINE|MIR	31604	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
179537	chr4	184968501	184970480	+	0	NA	Intergenic	Intergenic	-31050	NR_039660	100616111		NR_039660	ENSG00000263458	MIR4455	-	microRNA 4455	ncRNA
216150	chr8	11557871	11558030	+	0	NA	intron (NM_001715, intron 9 of 12)	intron (NM_001715, intron 9 of 12)	-18585	NR_040035	83655		NM_054029	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
190799	chr6	1311621	1311950	+	0	NA	promoter-TSS (NM_033260)	promoter-TSS (NM_033260)	-313	NM_033260	94234		NM_033260	ENSG00000164379	FOXQ1	HFH1	forkhead box Q1	protein-coding
116656	chr19	18342921	18343180	+	0	NA	intron (NM_001329471, intron 2 of 4)	AluSx1|SINE|Alu	2452	NM_017712	54858		NM_017712	ENSG00000130517	PGPEP1	PAP-I|PGI|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding
56750	chr12	120145051	120145350	+	0	NA	intron (NM_006836, intron 39 of 57)	intron (NM_006836, intron 39 of 57)	10299	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
25317	chr10	6220451	6220750	+	0	NA	intron (NR_136554, intron 7 of 11)	intron (NR_136554, intron 7 of 11)	17668	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
38414	chr11	44992571	44992730	+	0	NA	Intergenic	MIR3|SINE|MIR	18748	NR_026681	221122		NR_026681	ENSG00000254654	LINC02685	-	long intergenic non-protein coding RNA 2685	ncRNA
90477	chr17	1392771	1392930	+	0	NA	intron (NR_024058, intron 1 of 6)	AluSq2|SINE|Alu	7372	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
196280	chr6	42976851	42977500	+	0	NA	intron (NM_001316313, intron 1 of 16)	intron (NM_001316313, intron 1 of 16)	2006	NM_001316313	5190		NM_000287	ENSG00000124587	PEX6	HMLR2|PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
160690	chr3	32301521	32301780	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	62970	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
155574	chr22	38739851	38741000	+	0	NA	exon (NM_015374, exon 12 of 18)	exon (NM_015374, exon 12 of 18)	15041	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
126187	chr2	26745501	26746200	+	0	NA	Intergenic	Intergenic	-18434	NM_017877	54978		NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
26144	chr10	13821101	13821300	+	0	NA	intron (NM_018027, intron 3 of 24)	intron (NM_018027, intron 3 of 24)	-113633	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
120368	chr19	43621371	43621630	+	0	NA	TTS (NM_145296)	TTS (NM_145296)	-1871	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
183652	chr5	80257551	80257880	+	0	NA	Intergenic	Intergenic	-1667	NR_126060	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
169263	chr3	157178671	157179030	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-18703	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
234225	chrX	13000201	13000850	+	0	NA	Intergenic	Intergenic	25415	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
21450	chr1	205484051	205484150	+	0	NA	Intergenic	Intergenic	-20569	NM_002596	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
116906	chr19	18782171	18782330	+	0	NA	TTS (NM_000095)	TTS (NM_000095)	9055	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
44568	chr11	108228471	108229080	+	0	NA	intron (NM_000051, intron 3 of 62)	intron (NM_000051, intron 3 of 62)	5246	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
78224	chr15	90649551	90649650	+	0	NA	intron (NR_120372, intron 2 of 3)	intron (NR_120372, intron 2 of 3)	-10634	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
152251	chr22	20228171	20228330	+	0	NA	Intergenic	Intergenic	20961	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
39629	chr11	61446051	61446500	+	0	NA	3' UTR (NM_017841, exon 4 of 4)	3' UTR (NM_017841, exon 4 of 4)	16151	NM_017841	54949		NM_017841	ENSG00000167985	SDHAF2	C11orf79|PGL2|PPGL2|SDH5|hSDH5	succinate dehydrogenase complex assembly factor 2	protein-coding
164971	chr3	71292971	71293330	+	0	NA	intron (NR_126463, intron 2 of 4)	intron (NR_126463, intron 2 of 4)	3392	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
36068	chr11	2976551	2976650	+	0	NA	intron (NM_001369382, intron 4 of 15).2	intron (NM_001369382, intron 4 of 15).2	-12707	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
185774	chr5	132387821	132388080	+	0	NA	intron (NM_003060, intron 5 of 9)	intron (NM_003060, intron 5 of 9)	-18034	NR_110997	553103		NR_110997	ENSG00000233006	MIR3936HG	SLC22A5-AS1	MIR3936 host gene	ncRNA
101626	chr17	68211501	68211700	+	0	NA	intron (NM_001346471, intron 1 of 6)	L1MB7|LINE|L1	5471	NM_001346472	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
230070	chr9	127444471	127444830	+	0	NA	exon (NM_007135, exon 5 of 5)	exon (NM_007135, exon 5 of 5)	3987	NR_002449	26783		NR_002449	ENSG00000201302	SNORA65	RNU65|U65	small nucleolar RNA, H/ACA box 65	snoRNA
13081	chr1	111515651	111516680	+	0	NA	intron (NM_001081976, intron 1 of 5)	intron (NM_001081976, intron 1 of 5)	-12532	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
201120	chr6	142878321	142878900	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	66566	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
130918	chr2	87477021	87477650	+	0	NA	intron (NR_024205, intron 2 of 2)	intron (NR_024205, intron 2 of 2)	7385	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
192795	chr6	26571451	26572200	+	0	NA	intron (NR_134611, intron 1 of 1)	intron (NR_134611, intron 1 of 1)	2501	NR_134611	105374988		NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
224108	chr9	4600021	4600750	+	0	NA	non-coding (NR_148443, exon 8 of 8)	non-coding (NR_148443, exon 8 of 8)	61838	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
29514	chr10	70686871	70687630	+	0	NA	intron (NM_139155, intron 2 of 21)	SVA_F|Retroposon|SVA	14744	NM_080722	140766		NM_080722	ENSG00000138316	ADAMTS14	-	ADAM metallopeptidase with thrombospondin type 1 motif 14	protein-coding
135556	chr2	165015101	165015330	+	0	NA	Intergenic	Intergenic	-59690	NM_173512	151258		NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding
232843	chr9	136766471	136767180	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2307	NM_203347	389812		NM_203347	ENSG00000177984	LCN15	PRO6093|UNQ2541	lipocalin 15	protein-coding
166030	chr3	108524671	108524830	+	0	NA	intron (NM_014981, intron 1 of 41)	MLT1J|LTR|ERVL-MaLR	4572	NM_014981	22989		NM_014981	ENSG00000144821	MYH15	-	myosin heavy chain 15	protein-coding
219965	chr8	89739401	89739600	+	0	NA	intron (NR_125822, intron 1 of 4)	L1PB1|LINE|L1	18211	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
193544	chr6	30608421	30608680	+	0	NA	intron (NM_001376195, intron 5 of 19).6	AluSc8|SINE|Alu	8693	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
100523	chr17	62471721	62472000	+	0	NA	Intergenic	Intergenic	-5951	NM_001375271	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
70705	chr14	103292751	103293580	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-24119	NR_135269	105378183		NR_135269		LOC105378183	-	uncharacterized LOC105378183	ncRNA
203694	chr7	1032521	1032850	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	-4253	NR_146965	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
104045	chr17	80137951	80138730	+	0	NA	intron (NM_014740, intron 7 of 11)	intron (NM_014740, intron 7 of 11)	8788	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
228976	chr9	113526971	113527330	+	0	NA	intron (NM_144488, intron 18 of 25)	intron (NM_144488, intron 18 of 25)	-9461	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
105443	chr17	82963171	82963530	+	0	NA	intron (NR_135465, intron 7 of 13)	intron (NR_135465, intron 7 of 13)	43638	NR_135466	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
20431	chr1	198288051	198288150	+	0	NA	intron (NM_133494, intron 7 of 9)	intron (NM_133494, intron 7 of 9)	131102	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
72979	chr15	40588801	40589000	+	0	NA	Intergenic	AluSx|SINE|Alu	-5349	NM_144508	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
32106	chr10	101212201	101212400	+	0	NA	Intergenic	Intergenic	16660	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
8605	chr1	41544371	41545200	+	0	NA	intron (NM_001127714, intron 4 of 7)	intron (NM_001127714, intron 4 of 7)	-60102	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
120396	chr19	43745271	43745980	+	0	NA	intron (NM_019108, intron 5 of 13)	AluSz|SINE|Alu	9337	NM_019108	56006		NM_019108	ENSG00000105771	SMG9	C19orf61|F17127_1|HBMS|NEDITPO	SMG9 nonsense mediated mRNA decay factor	protein-coding
31502	chr10	96673351	96674350	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	46664	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
165707	chr3	102180171	102180400	+	0	NA	Intergenic	Intergenic	16580	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
54379	chr12	89839501	89839700	+	0	NA	Intergenic	Intergenic	-108093	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
55346	chr12	103968071	103968230	+	0	NA	intron (NM_001363612, intron 1 of 8)	L3|LINE|CR1	2278	NM_003211	6996		NM_003211	ENSG00000139372	TDG	hTDG	thymine DNA glycosylase	protein-coding
229804	chr9	125410051	125411130	+	0	NA	Intergenic	Intergenic	148764	NM_001354295	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
219851	chr8	82191421	82191680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-349264	NM_022133	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
77803	chr15	88450101	88450550	+	0	NA	Intergenic	Intergenic	17063	NM_022163	26589		NM_022163	ENSG00000259494	MRPL46	C15orf4|LIECG2|P2ECSL|mL46	mitochondrial ribosomal protein L46	protein-coding
1857	chr1	6363021	6363750	+	0	NA	intron (NM_007274, intron 1 of 8)	LTR13|LTR|ERVK	-2671	NM_181865	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
238726	chrX	154202671	154202850	+	0	NA	Intergenic	(CTTT)n|Simple_repeat|Simple_repeat	-16974	NM_000513	2652		NM_000513	ENSG00000268221	OPN1MW	CBBM|CBD|COD5|GCP|GOP|OPN1MW1	opsin 1, medium wave sensitive	protein-coding
149523	chr21	32930771	32931150	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-27928	NR_135522	102724502		NR_135522	ENSG00000228961	LINC01690	-	long intergenic non-protein coding RNA 1690	ncRNA
146720	chr20	50592951	50593930	+	0	NA	intron (NM_080829, intron 17 of 21)	AluSq|SINE|Alu	7654	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
185673	chr5	131633951	131634050	+	0	NA	intron (NM_016340, intron 1 of 27)	intron (NM_016340, intron 1 of 27)	1229	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
175309	chr4	68310021	68310280	+	0	NA	TTS (NM_133370)	TTS (NM_133370)	39940	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
37031	chr11	12133521	12133850	+	0	NA	intron (NM_001346293, intron 2 of 26)	intron (NM_001346293, intron 2 of 26)	-4705	NM_001282664	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
195898	chr6	41716721	41716980	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	16760	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
156721	chr22	41792271	41792630	+	0	NA	intron (NM_152513, intron 26 of 30)	MIRc|SINE|MIR	-8229	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
66774	chr14	64551521	64551980	+	0	NA	intron (NM_172365, intron 2 of 11)	MIRb|SINE|MIR	1789	NM_172365	145376		NM_172365	ENSG00000165807	PPP1R36	C14orf50	protein phosphatase 1 regulatory subunit 36	protein-coding
19599	chr1	179809521	179810250	+	0	NA	TTS (NR_138087)	TTS (NR_138087)	5961	NR_162130	113219451		NR_162130		MIR12116	-	microRNA 12116	ncRNA
141532	chr2	241298601	241299200	+	0	NA	intron (NM_005336, intron 1 of 27)	L1MC4|LINE|L1	-16287	NM_006155	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
58182	chr12	124995371	124995880	+	0	NA	intron (NM_080626, intron 1 of 2)	intron (NM_080626, intron 1 of 2)	1980	NM_080626	140707		NM_080626	ENSG00000184992	BRI3BP	BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19	BRI3 binding protein	protein-coding
86223	chr16	58112621	58113080	+	0	NA	TTS (NM_013242)	TTS (NM_013242)	16531	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
203793	chr7	1247871	1249230	+	0	NA	Intergenic	Intergenic	15678	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
124439	chr19	58497751	58497850	+	0	NA	TTS (NM_012254)	TTS (NM_012254)	14192	NM_012254	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
66615	chr14	63723571	63723730	+	0	NA	intron (NM_030791, intron 1 of 2)	AluSc|SINE|Alu	4415	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
78712	chr15	98442421	98442700	+	0	NA	intron (NM_182562, intron 5 of 6)	intron (NM_182562, intron 5 of 6)	-21562	NR_146567	105371011		NR_146566		LINC02351	-	long intergenic non-protein coding RNA 2351	ncRNA
57066	chr12	120999401	120999600	+	0	NA	TTS (NM_001286191)	TTS (NM_001286191)	16987	NM_001286191	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
87426	chr16	70688301	70688500	+	0	NA	intron (NM_001351157, intron 17 of 17)	intron (NM_001351157, intron 17 of 17)	-2347	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
229037	chr9	114326001	114326430	+	0	NA	intron (NM_000607, intron 5 of 5)	MIRb|SINE|MIR	3117	NM_000607	5004		NM_000607	ENSG00000229314	ORM1	A1AG1|AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
201773	chr6	149958071	149958430	+	0	NA	Intergenic	Intergenic	-5693	NM_001317089	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
66432	chr14	61528621	61529300	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	41234	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
138774	chr2	216012751	216013980	+	0	NA	5' UTR (NM_018000, exon 1 of 5)	5' UTR (NM_018000, exon 1 of 5)	186	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
2016	chr1	6967521	6967780	+	0	NA	intron (NM_001349608, intron 2 of 21)	intron (NM_001349608, intron 2 of 21)	182196	NM_001349609	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
122890	chr19	50517401	50517830	+	0	NA	exon (NM_001080457, exon 3 of 3)	exon (NM_001080457, exon 3 of 3)	-2931	NM_001024656	554235		NM_001024656	ENSG00000204653	ASPDH	-	aspartate dehydrogenase domain containing	protein-coding
209748	chr7	87201871	87202430	+	0	NA	intron (NR_138030, intron 1 of 3)	L2c|LINE|L2	17582	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
186345	chr5	134757901	134759250	+	0	NA	promoter-TSS (NM_001300860)	promoter-TSS (NM_001300860)	-204	NR_125341	9879		NM_014829	ENSG00000145833	DDX46	PRPF5|Prp5	DEAD-box helicase 46	protein-coding
87648	chr16	74569001	74569630	+	0	NA	intron (NM_001145667, intron 1 of 25)	L1M4a1|LINE|L1	37799	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
12545	chr1	108644671	108646040	+	0	NA	Intergenic	Intergenic	15738	NM_001102592	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
28601	chr10	56358121	56358380	+	0	NA	3' UTR (NM_032997, exon 8 of 8)	3' UTR (NM_032997, exon 8 of 8)	3009	NM_007057	11130		NM_007057	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|SIP30|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
5240	chr1	25009121	25009380	+	0	NA	Intergenic	Intergenic	-14253	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
120431	chr19	44093651	44094720	+	0	NA	promoter-TSS (NM_001321645)	promoter-TSS (NM_001321645)	-176	NM_013398	7767		NM_013398	ENSG00000267680	ZNF224	BMZF-2|BMZF2|KOX22|ZNF233|ZNF255|ZNF27	zinc finger protein 224	protein-coding
188556	chr5	156934751	156935190	+	0	NA	intron (NM_001146726, intron 4 of 7)	intron (NM_001146726, intron 4 of 7)	28256	NM_001146726	91937		NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T cell immunoglobulin and mucin domain containing 4	protein-coding
219357	chr8	70344201	70344400	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	59090	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
141905	chr20	885071	885230	+	0	NA	exon (NM_015985, exon 4 of 9)	exon (NM_015985, exon 4 of 9)	31184	NM_001322809	51378		NM_015985	ENSG00000101280	ANGPT4	ANG3|ANG4	angiopoietin 4	protein-coding
186870	chr5	139503101	139503300	+	0	NA	Intergenic	LTR12|LTR|ERV1	-20442	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
64716	chr14	34227921	34228200	+	0	NA	Intergenic	Intergenic	234180	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
180202	chr5	1500721	1502680	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	9156	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
129380	chr2	68799121	68799380	+	0	NA	intron (NM_001364819, intron 4 of 10)	intron (NM_001364819, intron 4 of 10)	24340	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
172401	chr4	1788351	1788650	+	0	NA	Intergenic	Intergenic	-4793	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
136032	chr2	172464651	172464950	+	0	NA	intron (NR_157573, intron 1 of 1)	intron (NR_157573, intron 1 of 1)	1222	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
29135	chr10	68559951	68560250	+	0	NA	promoter-TSS (NM_030625)	promoter-TSS (NM_030625)	-237	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
54177	chr12	77060501	77060780	+	0	NA	intron (NM_203394, intron 2 of 12)	intron (NM_203394, intron 2 of 12)	4929	NM_203394	144455		NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
141655	chr2	241761421	241761680	+	0	NA	intron (NM_001352824, intron 9 of 9)	MER2|DNA|TcMar-Tigger	-15272	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
148458	chr20	64021321	64021780	+	0	NA	intron (NM_012469, intron 12 of 20)	(GT)n|Simple_repeat|Simple_repeat	-12177	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
66254	chr14	61357021	61357730	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	35932	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
139445	chr2	223798121	223798430	+	0	NA	intron (NM_001039569, intron 1 of 4)	intron (NM_001039569, intron 1 of 4)	39307	NM_001039569	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
145824	chr20	45789401	45789600	+	0	NA	intron (NM_080614, intron 2 of 6)	AluY|SINE|Alu	2383	NM_080614	140686		NM_080614	ENSG00000124116	WFDC3	WAP14|dJ447F3.3	WAP four-disulfide core domain 3	protein-coding
212273	chr7	123557201	123558290	+	0	NA	promoter-TSS (NM_005000)	promoter-TSS (NM_005000)	26	NM_001282421	4698		NM_005000	ENSG00000128609	NDUFA5	B13|CI-13KD-B|CI-13kB|NUFM|UQOR13	NADH:ubiquinone oxidoreductase subunit A5	protein-coding
197595	chr6	80165351	80165450	+	0	NA	intron (NM_000056, intron 3 of 10)	Charlie13a|DNA|hAT-Charlie	58729	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
153735	chr22	29308521	29309430	+	0	NA	intron (NM_006478, intron 2 of 5)	intron (NM_006478, intron 2 of 5)	1952	NM_006478	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
187251	chr5	141414651	141415450	+	0	NA	exon (NM_032090, exon 1 of 1)	exon (NM_032090, exon 1 of 1)	1874	NM_032090	56106		NM_018913	ENSG00000253846	PCDHGA10	PCDH-GAMMA-A10	protocadherin gamma subfamily A, 10	protein-coding
118621	chr19	37007671	37007830	+	0	NA	Intergenic	SST1|Satellite|centr	-70472	NM_001329519	147923		NM_144689	ENSG00000197050	ZNF420	APAK	zinc finger protein 420	protein-coding
75724	chr15	68195651	68195950	+	0	NA	intron (NR_104583, intron 1 of 1)	intron (NR_104583, intron 1 of 1)	9532	NM_033429	91860		NM_033429	ENSG00000129007	CALML4	NY-BR-20	calmodulin like 4	protein-coding
146173	chr20	48740451	48740830	+	0	NA	intron (NM_020820, intron 3 of 39)	intron (NM_020820, intron 3 of 39)	87359	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
154255	chr22	31617271	31617680	+	0	NA	intron (NM_001007467, intron 31 of 32)	AluSx4|SINE|Alu	4056	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
225503	chr9	35663371	35663780	+	0	NA	intron (NM_032818, intron 4 of 8)	intron (NM_032818, intron 4 of 8)	1620	NM_032818	84904		NM_032818	ENSG00000137135	ARHGEF39	C9orf100	Rho guanine nucleotide exchange factor 39	protein-coding
138673	chr2	213002371	213002530	+	0	NA	3' UTR (NM_001079526, exon 9 of 9)	3' UTR (NM_001079526, exon 9 of 9)	-76114	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
61918	chr13	77740951	77741400	+	0	NA	promoter-TSS (NM_001242870)	promoter-TSS (NM_001242870)	15	NM_001242869	122060		NM_144595	ENSG00000139737	SLAIN1	C13orf32	SLAIN motif family member 1	protein-coding
163246	chr3	50277521	50277850	+	0	NA	TTS (NM_001290060)	TTS (NM_001290060)	-1402	NM_153215	132228		NM_153215	ENSG00000179564	LSMEM2	C3orf45	leucine rich single-pass membrane protein 2	protein-coding
201674	chr6	149511001	149511650	+	0	NA	intron (NM_139126, intron 12 of 12)	AluJb|SINE|Alu	-26311	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
41495	chr11	66247071	66247450	+	0	NA	Intergenic	L2b|LINE|L2	-10034	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
233388	chr9	137536371	137537800	+	0	NA	intron (NM_001098537, intron 8 of 34)	intron (NM_001098537, intron 8 of 34)	13317	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
228588	chr9	104927651	104928600	+	0	NA	promoter-TSS (NM_005502)	promoter-TSS (NM_005502)	30	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
1387	chr1	2537751	2538050	+	0	NA	Intergenic	Intergenic	-7637	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
89186	chr16	88567721	88567980	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2553	NM_001294340	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
41801	chr11	66867801	66868000	+	0	NA	intron (NM_022172, intron 8 of 20)	intron (NM_022172, intron 8 of 20)	10836	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
85077	chr16	32897871	32898100	+	0	NA	Intergenic	Intergenic	-12843	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
232221	chr9	134372251	134372750	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-6795	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
45809	chr11	119345521	119346780	+	0	NA	exon (NM_031433, exon 3 of 15)	exon (NM_031433, exon 3 of 15)	555	NM_031433	83552		NM_031433	ENSG00000235718	MFRP	CTRP5|MCOP5|NNO2|RD6	membrane frizzled-related protein	protein-coding
36994	chr11	11884701	11885100	+	0	NA	intron (NM_001372102, intron 2 of 25)	L1MB4|LINE|L1	42928	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
129234	chr2	68282821	68283250	+	0	NA	Intergenic	Intergenic	-30503	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
214577	chr7	150622851	150623730	+	0	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	9095	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
128924	chr2	64453721	64455130	+	0	NA	5' UTR (NM_014181, exon 1 of 5)	5' UTR (NM_014181, exon 1 of 5)	263	NM_014181	29094		NM_014181	ENSG00000119862	LGALSL	GRP|HSPC159	galectin like	protein-coding
160979	chr3	37212971	37213580	+	0	NA	Intergenic	L3|LINE|CR1	-29996	NM_002078	2803		NM_002078	ENSG00000144674	GOLGA4	CRPF46|GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
99503	chr17	50200301	50201900	+	0	NA	intron (NM_000088, intron 1 of 50)	CpG-11414	531	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
53311	chr12	64595301	64595700	+	0	NA	Intergenic	MER34A|LTR|ERV1	-14995	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
24558	chr1	244869071	244869230	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-4607	NM_031844	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
221518	chr8	124641901	124642780	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	86133	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
41108	chr11	65544371	65544980	+	0	NA	intron (NM_001130144, intron 16 of 27)	intron (NM_001130144, intron 16 of 27)	13553	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
207645	chr7	45053501	45053700	+	0	NA	intron (NM_001363458, intron 2 of 10)	ERV3-16A3_I-int|LTR|ERVL	25966	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
106937	chr18	26549171	26550030	+	0	NA	promoter-TSS (NM_001136205)	promoter-TSS (NM_001136205)	-165	NM_001136205	284252		NM_198991	ENSG00000134504	KCTD1	C18orf5	potassium channel tetramerization domain containing 1	protein-coding
143184	chr20	24469421	24469880	+	0	NA	promoter-TSS (NM_001323607)	promoter-TSS (NM_001323607)	21	NM_024893	79953		NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
41460	chr11	66115321	66116210	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	45493	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
236939	chrX	100413301	100413500	+	0	NA	Intergenic	Intergenic	-3127	NM_001105243	57526		NM_020766	ENSG00000165194	PCDH19	DEE9|EFMR|EIEE9	protocadherin 19	protein-coding
19825	chr1	182837451	182837750	+	0	NA	non-coding (NR_148933, exon 2 of 2)	non-coding (NR_148933, exon 2 of 2)	-1747	NR_033302	1660		NM_001357	ENSG00000135829	DHX9	DDX9|LKP|NDH2|NDHII|RHA	DExH-box helicase 9	protein-coding
194460	chr6	33180701	33181100	+	0	NA	intron (NM_080680, intron 10 of 65).6	intron (NM_080680, intron 10 of 65).6	11567	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
189171	chr5	171402471	171402950	+	0	NA	intron (NM_002520, intron 8 of 10)	MSTA|LTR|ERVL-MaLR	14861	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
56270	chr12	112086001	112086400	+	0	NA	intron (NM_024953, intron 4 of 23)	intron (NM_024953, intron 4 of 23)	22583	NM_024953	80018		NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N-alpha-acetyltransferase 25, NatB auxiliary subunit	protein-coding
33247	chr10	114404271	114404880	+	0	NA	promoter-TSS (NM_001001936)	promoter-TSS (NM_001001936)	-73	NM_001001936	84632		NM_032550	ENSG00000169129	AFAP1L2	CTB-1144G6.4|KIAA1914|XB130	actin filament associated protein 1 like 2	protein-coding
52483	chr12	55976501	55976700	+	0	NA	intron (NM_002868, intron 1 of 5)	intron (NM_002868, intron 1 of 5)	2522	NM_002868	5869		NM_002868	ENSG00000111540	RAB5B	-	RAB5B, member RAS oncogene family	protein-coding
96528	chr17	40348751	40349380	+	0	NA	intron (NM_000964, intron 3 of 8)	intron (NM_000964, intron 3 of 8)	-5929	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
181429	chr5	40826771	40827330	+	0	NA	non-coding (NR_159993, exon 5 of 5)	non-coding (NR_159993, exon 5 of 5)	5685	NR_002583	619564		NR_002583	ENSG00000212296	SNORD72	HBII-240	small nucleolar RNA, C/D box 72	snoRNA
21111	chr1	203606971	203608330	+	0	NA	Intergenic	AluSz|SINE|Alu	-19137	NM_001001396	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
179316	chr4	179867451	179867550	+	0	NA	Intergenic	Intergenic	1291649	NR_033918	728081		NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
25119	chr10	3979701	3980080	+	0	NA	Intergenic	Intergenic	-11270	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
212540	chr7	128854771	128854930	+	0	NA	exon (NM_001127487, exon 41 of 47)	exon (NM_001127487, exon 41 of 47)	7776	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
128042	chr2	47501571	47501800	+	0	NA	Intergenic	Intergenic	-25852	NR_120602	644093		NR_120602	ENSG00000235760	MSH2-OT1	HCG2040054	MSH2 overlapping transcript 1	ncRNA
77071	chr15	78896001	78896630	+	0	NA	intron (NM_206839, intron 12 of 12)	AluSp|SINE|Alu	23326	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
102041	chr17	74864671	74865550	+	0	NA	intron (NM_004110, intron 6 of 11)	intron (NM_004110, intron 6 of 11)	3643	NM_001258016	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
4172	chr1	19405071	19405480	+	0	NA	intron (NM_001313932, intron 2 of 4)	L2a|LINE|L2	79020	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
153869	chr22	30252651	30253480	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6306	NM_002309	3976		NM_002309	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	LIF interleukin 6 family cytokine	protein-coding
183535	chr5	79990371	79991550	+	0	NA	promoter-TSS (NM_001306213)	promoter-TSS (NM_001306213)	302	NM_001363818	345778		NM_001010891	ENSG00000177034	MTX3	-	metaxin 3	protein-coding
137991	chr2	201242901	201243100	+	0	NA	intron (NM_033355, intron 2 of 9)	L1MB1|LINE|L1	9537	NM_033358	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
80291	chr16	2254871	2255530	+	0	NA	intron (NM_001286627, intron 5 of 5)	intron (NM_001286627, intron 5 of 5)	-3613	NM_001919	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
162975	chr3	49701221	49702300	+	0	NA	intron (NR_135218, intron 16 of 38)	intron (NR_135218, intron 16 of 38)	12203	NM_022064	63891		NM_022064	ENSG00000164068	RNF123	FP1477|KPC1	ring finger protein 123	protein-coding
214320	chr7	149279501	149279700	+	0	NA	intron (NR_144367, intron 6 of 6)	intron (NR_144367, intron 6 of 6)	-5681	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
173140	chr4	6656771	6657530	+	0	NA	Intergenic	AluSx|SINE|Alu	16731	NR_134665	105374366		NR_134664	ENSG00000251580	LINC02482	-	long intergenic non-protein coding RNA 2482	ncRNA
88057	chr16	81457371	81457750	+	0	NA	intron (NM_198390, intron 1 of 20)	MER20|DNA|hAT-Charlie	12390	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
34162	chr10	128073551	128073650	+	0	NA	intron (NM_001323354, intron 16 of 19)	intron (NM_001323354, intron 16 of 19)	-11175	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
76481	chr15	74874871	74875850	+	0	NA	Intergenic	L2a|LINE|L2	-1995	NM_001320778	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
194791	chr6	34223501	34224980	+	0	NA	Intergenic	CpG	-12633	NM_001319082	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
229210	chr9	114869701	114870250	+	0	NA	Intergenic	L1P2|LINE|L1	60616	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
21818	chr1	207325021	207325630	+	0	NA	intron (NM_001300904, intron 3 of 10)	AluSz|SINE|Alu	3647	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
128199	chr2	53966051	53966350	+	0	NA	intron (NM_014614, intron 1 of 46)	AluSz6|SINE|Alu	4793	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
236751	chrX	78515051	78515550	+	0	NA	Intergenic	Intergenic	144028	NM_152694	203430		NM_152694	ENSG00000179300	RTL3	Mar3|Mart3|SIRH9|ZCCHC5|ZHC5	retrotransposon Gag like 3	protein-coding
10646	chr1	70236451	70236830	+	0	NA	intron (NM_001350612, intron 7 of 13)	intron (NM_001350612, intron 7 of 13)	15260	NM_001350613	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
133218	chr2	113178951	113179480	+	0	NA	intron (NM_012455, intron 1 of 16)	intron (NM_012455, intron 1 of 16)	5244	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
75212	chr15	64839651	64840250	+	0	NA	Intergenic	Intergenic	-1933	NM_001195059	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
228949	chr9	113399601	113399800	+	0	NA	intron (NM_001003945, intron 1 of 11)	intron (NM_001003945, intron 1 of 11)	1420	NM_001317745	210		NM_000031	ENSG00000148218	ALAD	ALADH|PBGS	aminolevulinate dehydratase	protein-coding
86706	chr16	67543951	67544050	+	0	NA	intron (NM_024519, intron 14 of 21)	intron (NM_024519, intron 14 of 21)	6538	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
206278	chr7	29883671	29884030	+	0	NA	exon (NM_001080529, exon 5 of 9)	exon (NM_001080529, exon 5 of 9)	77296	NM_001080529	644150		NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family member 3	protein-coding
32939	chr10	110311021	110311880	+	0	NA	Intergenic	Intergenic	-6530	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
130692	chr2	86554051	86554350	+	0	NA	intron (NM_001198954, intron 3 of 7)	MLT1A0|LTR|ERVL-MaLR	9243	NM_001193517	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
237141	chrX	106999021	106999760	+	0	NA	intron (NM_024657, intron 2 of 16)	CpG	822	NM_001085354	79710		NM_024657	ENSG00000133131	MORC4	ZCW4|ZCWCC2|dJ75H8.2	MORC family CW-type zinc finger 4	protein-coding
161299	chr3	39377801	39378530	+	0	NA	Intergenic	Intergenic	-5205	NM_001354798	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
92511	chr17	8893601	8894080	+	0	NA	intron (NM_001142633, intron 5 of 18)	intron (NM_001142633, intron 5 of 18)	18677	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
35422	chr11	1430371	1430680	+	0	NA	intron (NM_001256630, intron 1 of 19)	intron (NM_001256630, intron 1 of 19)	19373	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
16577	chr1	155008951	155009730	+	0	NA	intron (NM_001377455, intron 2 of 3)	intron (NM_001377455, intron 2 of 3)	6538	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
40594	chr11	64490701	64490980	+	0	NA	Intergenic	Intergenic	41783	NR_073177	100996455		NR_073177	ENSG00000181908	LINC02724	-	long intergenic non-protein coding RNA 2724	ncRNA
15194	chr1	149218601	149218850	+	0	NA	Intergenic	Intergenic	-17579	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
83155	chr16	23458471	23458630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5361	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
151848	chr22	18537121	18537380	+	0	NA	non-coding (NR_003563, exon 12 of 15)	non-coding (NR_003563, exon 12 of 15)	9448	NM_001242313	728229		NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
32288	chr10	102123351	102123850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3232	NM_001321612	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
192822	chr6	27091751	27092080	+	0	NA	Intergenic	Intergenic	40880	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
9958	chr1	54791571	54792180	+	0	NA	intron (NM_017904, intron 1 of 5)	MIRb|SINE|MIR	9448	NM_017904	55001		NM_017904	ENSG00000006555	TTC22	-	tetratricopeptide repeat domain 22	protein-coding
80562	chr16	2842221	2843400	+	0	NA	promoter-TSS (NR_026864)	promoter-TSS (NR_026864)	-59	NR_026864	124221		NM_178453	ENSG00000291300	PRSS30P	Disp|TMPRSS8|TMPRSS8P	serine protease 30, pseudogene	pseudo
48618	chr12	10371301	10371680	+	0	NA	TTS (NM_007360)	TTS (NM_007360)	7721	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
159873	chr3	16824051	16824650	+	0	NA	Intergenic	Intergenic	-60605	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
158756	chr3	9386121	9386800	+	0	NA	3' UTR (NM_015453, exon 10 of 10)	3' UTR (NM_015453, exon 10 of 10)	10163	NR_132781	440944		NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
169686	chr3	172042471	172042630	+	0	NA	intron (NM_001135095, intron 1 of 25)	MIRb|SINE|MIR	2019	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
157189	chr22	43087921	43089630	+	0	NA	intron (NR_027779, intron 1 of 11)	intron (NR_027779, intron 1 of 11)	616	NM_012263	25809		NM_012263	ENSG00000100271	TTLL1	C22orf7|HS323M22B|TPGS3	TTL family tubulin polyglutamylase complex subunit L1	protein-coding
144503	chr20	35686751	35687430	+	0	NA	intron (NM_001198989, intron 4 of 11)	LTR13|LTR|ERVK	12262	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
71413	chr14	105559661	105560300	+	0	NA	Intergenic	CpG	28125	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
22711	chr1	224117071	224117330	+	0	NA	intron (NR_049764, intron 1 of 3)	AluSx|SINE|Alu	3089	NR_049764	23219		NM_015176	ENSG00000143756	FBXO28	CENP-30|DEE100|Fbx28	F-box protein 28	protein-coding
19070	chr1	170068621	170069350	+	0	NA	promoter-TSS (NM_001204517)	promoter-TSS (NM_001204517)	-70	NM_001204517	22920		NM_014970	ENSG00000075945	KIFAP3	FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1	kinesin associated protein 3	protein-coding
116735	chr19	18465951	18466350	+	0	NA	intron (NM_006532, intron 2 of 11)	intron (NM_006532, intron 2 of 11)	-28017	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
4212	chr1	19457671	19458230	+	0	NA	intron (NM_001206541, intron 1 of 8)	L1ME4c|LINE|L1	26345	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
135880	chr2	171085451	171085750	+	0	NA	intron (NM_012290, intron 2 of 20)	HAL1M8|LINE|L1	-18627	NM_001136555	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
140086	chr2	231450451	231450550	+	0	NA	Intergenic	Intergenic	5436	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
131694	chr2	97737221	97737500	+	0	NA	intron (NM_207519, intron 2 of 5)	L2a|LINE|L2	4060	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
224824	chr9	26945351	26945450	+	0	NA	intron (NM_001321546, intron 1 of 12)	intron (NM_001321546, intron 1 of 12)	-1590	NM_001099223	80173		NM_025103	ENSG00000096872	IFT74	BBS22|CCDC2|CMG-1|CMG1|JBTS40|SPGF58	intraflagellar transport 74	protein-coding
208693	chr7	73239771	73240630	+	0	NA	Intergenic	AluSz|SINE|Alu	19561	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
84573	chr16	30626471	30626630	+	0	NA	Intergenic	Intergenic	-15775	NR_073481	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
31223	chr10	91758521	91758880	+	0	NA	Intergenic	Intergenic	39496	NR_108070	100507633		NR_108070	ENSG00000228701	TNKS2-DT	TNKS2-AS1	TNKS2 divergent transcript	ncRNA
160997	chr3	37262351	37262450	+	0	NA	intron (NM_002078, intron 2 of 23)	AluSz6|SINE|Alu	-18205	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
12458	chr1	107826271	107826630	+	0	NA	intron (NM_006113, intron 2 of 26)	MIRc|SINE|MIR	-70773	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
207308	chr7	44025551	44026200	+	0	NA	Intergenic	AluSx|SINE|Alu	-6681	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
214599	chr7	150676121	150676380	+	0	NA	Intergenic	Intergenic	-9456	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
26183	chr10	14537721	14537980	+	0	NA	intron (NM_031453, intron 2 of 4)	AluSc|SINE|Alu	692	NM_001320740	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
54869	chr12	95554521	95554980	+	0	NA	Intergenic	Intergenic	-3274	NM_032147	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
198543	chr6	106554401	106554600	+	0	NA	intron (NM_001371242, intron 16 of 21)	AluSz|SINE|Alu	42645	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
142207	chr20	3043571	3043730	+	0	NA	promoter-TSS (NM_001501)	promoter-TSS (NM_001501)	28	NM_178331	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
53619	chr12	68151771	68151950	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	7880	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
226986	chr9	83473421	83473680	+	0	NA	intron (NM_174938, intron 1 of 13)	intron (NM_174938, intron 1 of 13)	-5808	NM_001244960	257019		NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
202480	chr6	158255271	158255430	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-57115	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
133120	chr2	112654751	112655280	+	0	NA	intron (NM_005415, intron 5 of 10)	AluSx|SINE|Alu	9076	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
162641	chr3	48818401	48819000	+	0	NA	intron (NM_004157, intron 1 of 10)	AluJo|SINE|Alu	29174	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
2978	chr1	11979671	11980930	+	0	NA	promoter-TSS (NM_014874)	promoter-TSS (NM_014874)	119	NM_001127660	9927		NM_014874	ENSG00000116688	MFN2	CMT2A|CMT2A2|CMT2A2A|CMT2A2B|CPRP1|HMSN6A|HSG|MARF|MSL	mitofusin 2	protein-coding
70880	chr14	103846251	103846550	+	0	NA	intron (NM_015316, intron 1 of 16)	intron (NM_015316, intron 1 of 16)	1175	NM_015316	23368		NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
216107	chr8	11172851	11173150	+	0	NA	intron (NR_138153, intron 1 of 2)	intron (NR_138153, intron 1 of 2)	28366	NR_138152	286046		NM_173683	ENSG00000171044	XKR6	C8orf21|C8orf5|C8orf7|XRG6	XK related 6	protein-coding
233626	chrX	513151	513450	+	0	NA	Intergenic	Intergenic	-111044	NM_006883	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
176934	chr4	102864651	102864950	+	0	NA	intron (NM_181890, intron 1 of 7)	L1ME3|LINE|L1	4093	NM_181893	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
26728	chr10	22678821	22679080	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	35158	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
208794	chr7	73593871	73595130	+	0	NA	intron (NR_134541, intron 14 of 15)	intron (NR_134541, intron 14 of 15)	-15921	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
24445	chr1	243751421	243751680	+	0	NA	intron (NM_005465, intron 2 of 13)	intron (NM_005465, intron 2 of 13)	91732	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
131793	chr2	98507821	98508080	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	61940	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
152087	chr22	19763751	19764080	+	0	NA	intron (NM_080646, intron 4 of 8)	intron (NM_080646, intron 4 of 8)	3137	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
186608	chr5	138524221	138525000	+	0	NA	intron (NM_004730, intron 2 of 10)	AluSc|SINE|Alu	17101	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
61852	chr13	76986921	76987180	+	0	NA	Intergenic	Intergenic	-5031	NM_001366624	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
136266	chr2	174678371	174678750	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	4339	NM_001077269	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
229128	chr9	114467821	114468080	+	0	NA	intron (NM_015404, intron 2 of 11)	intron (NM_015404, intron 2 of 11)	35265	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
86502	chr16	67052471	67053620	+	0	NA	intron (NM_001368708, intron 3 of 4)	intron (NM_001368708, intron 3 of 4)	23896	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
28309	chr10	46263821	46264230	+	0	NA	intron (NR_103827, intron 1 of 4)	intron (NR_103827, intron 1 of 4)	5583	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
109086	chr18	79955151	79955650	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-3747	NM_025078	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
37945	chr11	34357601	34358900	+	0	NA	promoter-TSS (NM_145804)	promoter-TSS (NM_145804)	-240	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
3105	chr1	12210471	12211530	+	0	NA	Intergenic	AluSz|SINE|Alu	-19030	NM_015378	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
30173	chr10	74213151	74213800	+	0	NA	intron (NM_001202449, intron 2 of 9)	intron (NM_001202449, intron 2 of 9)	36712	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
125470	chr2	12314201	12314400	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	115170	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
4681	chr1	22710321	22711400	+	0	NA	promoter-TSS (NM_004442)	promoter-TSS (NM_004442)	21	NM_001309193	2048		NM_004442	ENSG00000133216	EPHB2	BDPLT22|CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5	EPH receptor B2	protein-coding
199662	chr6	122449171	122449330	+	0	NA	intron (NM_020755, intron 7 of 9)	Tigger1|DNA|TcMar-Tigger	22557	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
186958	chr5	139662001	139662200	+	0	NA	intron (NM_001317207, intron 1 of 2)	intron (NM_001317207, intron 1 of 2)	2545	NM_001317206	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
51428	chr12	52022851	52024300	+	0	NA	intron (NM_001202233, intron 1 of 7)	CpG	743	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
80766	chr16	3171301	3172430	+	0	NA	Intergenic	Intergenic	-16339	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
81068	chr16	4334521	4334780	+	0	NA	intron (NM_001318918, intron 4 of 7).2	MLT1C|LTR|ERVL-MaLR	-6310	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
18685	chr1	167374271	167374800	+	0	NA	intron (NM_002697, intron 6 of 15)	intron (NM_002697, intron 6 of 15)	45465	NM_001198783	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
47150	chr12	761671	762280	+	0	NA	intron (NM_018979, intron 1 of 27)	MER2|DNA|TcMar-Tigger	9052	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
150206	chr21	39381771	39382700	+	0	NA	intron (NM_001350296, intron 1 of 4)	AluSx1|SINE|Alu	1777	NM_001350294	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
158552	chr3	4396621	4396880	+	0	NA	intron (NM_182760, intron 7 of 8)	intron (NM_182760, intron 7 of 8)	70519	NM_182760	285362		NM_182760	ENSG00000144455	SUMF1	AAPA3037|FGE|UNQ3037	sulfatase modifying factor 1	protein-coding
64512	chr14	24370201	24370830	+	0	NA	exon (NM_001136022, exon 3 of 10)	exon (NM_001136022, exon 3 of 10)	1433	NM_001198966	4776		NM_004554	ENSG00000100968	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T cells 4	protein-coding
136298	chr2	174780251	174781280	+	0	NA	Intergenic	Intergenic	-16293	NM_000079	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
39091	chr11	48011201	48012700	+	0	NA	intron (NM_002843, intron 1 of 24)	AluJb|SINE|Alu	31391	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
17539	chr1	156788651	156789150	+	0	NA	intron (NM_005973, intron 3 of 6)	AluSz|SINE|Alu	21365	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
120347	chr19	43578971	43579330	+	0	NA	intron (NM_001193621, intron 3 of 5)	intron (NM_001193621, intron 3 of 5)	-1394	NM_001193622	390940		NM_001193621	ENSG00000234465	PINLYP	-	phospholipase A2 inhibitor and LY6/PLAUR domain containing	protein-coding
195659	chr6	37971821	37972280	+	0	NA	intron (NM_021943, intron 2 of 5)	intron (NM_021943, intron 2 of 5)	152323	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
176078	chr4	82864501	82865050	+	0	NA	intron (NM_001318120, intron 12 of 28)	AluSq2|SINE|Alu	26378	NM_001077207	22872		NM_014933	ENSG00000138674	SEC31A	ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1	SEC31 homolog A, COPII coat complex component	protein-coding
120223	chr19	42310451	42310750	+	0	NA	exon (NM_199285, exon 3 of 3)	exon (NM_199285, exon 3 of 3)	-2709	NM_001366910	284339		NM_173633	ENSG00000167619	TMEM145	-	transmembrane protein 145	protein-coding
169328	chr3	159911271	159911630	+	0	NA	Intergenic	Intergenic	71589	NM_001197109	29970		NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
188752	chr5	157569351	157570100	+	0	NA	intron (NM_033274, intron 2 of 22)	intron (NM_033274, intron 2 of 22)	6050	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
161277	chr3	39283401	39283600	+	0	NA	Intergenic	AluSg4|SINE|Alu	-1765	NM_001171174	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
200672	chr6	137216521	137216780	+	0	NA	intron (NM_001363526, intron 1 of 7)	intron (NM_001363526, intron 1 of 7)	2546	NM_001363526	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
119884	chr19	41537651	41538150	+	0	NA	TTS (NR_110724)	TTS (NR_110724)	2402	NR_110724	101927931		NR_110724	ENSG00000270164	LINC01480	-	long intergenic non-protein coding RNA 1480	ncRNA
94758	chr17	30817301	30817500	+	0	NA	intron (NM_015986, intron 1 of 7)	AluSx|SINE|Alu	7292	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
21952	chr1	207962851	207964150	+	0	NA	intron (NR_167983, intron 2 of 2)	CpG	4509	NR_167983	105372883		NR_167982		LINC02767	-	long intergenic non-protein coding RNA 2767	ncRNA
165750	chr3	105743921	105744380	+	0	NA	intron (NM_001321811, intron 5 of 16)	intron (NM_001321811, intron 5 of 16)	123441	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
239205	chrY	12920451	12921450	+	0	NA	TTS (NM_001122665)	TTS (NM_001122665)	15245	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
2610	chr1	10034371	10034600	+	0	NA	intron (NM_001105562, intron 1 of 27)	intron (NM_001105562, intron 1 of 27)	1527	NM_006048	10277		NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
42342	chr11	68506271	68506430	+	0	NA	intron (NR_147971, intron 2 of 24)	AluJr|SINE|Alu	45598	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
124849	chr2	7795851	7795950	+	0	NA	Intergenic	Intergenic	103755	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
152314	chr22	20357171	20357530	+	0	NA	Intergenic	CpG	18437	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
112394	chr19	6106321	6106580	+	0	NA	intron (NM_000635, intron 1 of 17)	MER46C|DNA|TcMar-Tigger	4050	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
195909	chr6	41732301	41733600	+	0	NA	TTS (NR_162107)	TTS (NR_162107)	660	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
64388	chr14	24151501	24151850	+	0	NA	intron (NM_001310332, intron 10 of 20).2	intron (NM_001310332, intron 10 of 20).2	4177	NM_017999	55072		NM_017999	ENSG00000092098	RNF31	HOIP|IMD115|Paul|ZIBRA	ring finger protein 31	protein-coding
29703	chr10	72066951	72067200	+	0	NA	exon (NM_001244950, exon 8 of 11)	exon (NM_001244950, exon 8 of 11)	21476	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
17768	chr1	159055001	159055700	+	0	NA	TTS (NM_001376588)	TTS (NM_001376588)	21416	NM_004833	9447		NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding
114188	chr19	11401971	11402650	+	0	NA	intron (NM_001161616, intron 11 of 18)	intron (NM_001161616, intron 11 of 18)	17004	NM_001161616	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
151361	chr21	45814551	45814880	+	0	NA	intron (NM_001348243, intron 3 of 15)	(GTGAGTG)n|Simple_repeat|Simple_repeat	21704	NR_038876	100129027		NR_038876		PCBP3-AS1	-	PCBP3 antisense RNA 1	ncRNA
15002	chr1	148148871	148149650	+	0	NA	intron (NM_001385469, intron 1 of 23)	CpG	3021	NM_001101663	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
232433	chr9	136105051	136105630	+	0	NA	Intergenic	Intergenic	-10051	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
179425	chr4	184283701	184284100	+	0	NA	Intergenic	Intergenic	-66027	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
181204	chr5	39157821	39158830	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	61238	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
147864	chr20	62819871	62820300	+	0	NA	intron (NM_001853, intron 5 of 31)	intron (NM_001853, intron 5 of 31)	3035	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
16731	chr1	155254351	155254450	+	0	NA	exon (NM_006589, exon 2 of 12)	exon (NM_006589, exon 2 of 12)	1083	NM_001267608	10712		NM_006589	ENSG00000160767	ENTREP3	C1orf2|COTE1|FAM189B	endosomal transmembrane epsin interactor 3	protein-coding
217518	chr8	29230201	29230730	+	0	NA	intron (NM_015254, intron 2 of 39)	intron (NM_015254, intron 2 of 39)	32605	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
42708	chr11	72672701	72673450	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	1347	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
91956	chr17	7382271	7382930	+	0	NA	intron (NM_001251902, intron 1 of 12).2	intron (NM_001251902, intron 1 of 12).2	1511	NM_003985	8711		NM_003985	ENSG00000174292	TNK1	KOS1	tyrosine kinase non receptor 1	protein-coding
73816	chr15	48940601	48940880	+	0	NA	intron (NM_203349, intron 1 of 11)	intron (NM_203349, intron 1 of 11)	23179	NM_203349	399694		NM_203349	ENSG00000185634	SHC4	RaLP|SHCD	SHC adaptor protein 4	protein-coding
33589	chr10	119510151	119510450	+	0	NA	intron (NM_002925, intron 4 of 4)	L2b|LINE|L2	26233	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
74666	chr15	61857381	61858080	+	0	NA	intron (NM_017684, intron 80 of 82)	intron (NM_017684, intron 80 of 82)	127812	NR_146448	100506530		NR_146448	ENSG00000259284	LINC02349	-	long intergenic non-protein coding RNA 2349	ncRNA
43517	chr11	81845251	81845350	+	0	NA	Intergenic	AluYa5|SINE|Alu	45536	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
116869	chr19	18649401	18650000	+	0	NA	intron (NM_001345983, intron 1 of 2)	intron (NM_001345983, intron 1 of 2)	5062	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
207971	chr7	55304401	55304600	+	0	NA	Intergenic	L1MB8|LINE|L1	-48865	NR_110426	102725541		NR_110426		ELDR	Fabl|LINC01156	EGFR long non-coding downstream RNA	ncRNA
105833	chr18	2981201	2981830	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	30432	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
128177	chr2	53769501	53769800	+	0	NA	intron (NM_001346127, intron 1 of 2)	AluSp|SINE|Alu	1846	NM_001008708	494143		NM_001008708	ENSG00000143942	CHAC2	GCG1	ChaC glutathione specific gamma-glutamylcyclotransferase 2	protein-coding
141360	chr2	240627871	240628030	+	0	NA	intron (NM_005301, intron 1 of 1)	intron (NM_005301, intron 1 of 1)	2705	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
198270	chr6	99601821	99602130	+	0	NA	Intergenic	AluJb|SINE|Alu	-4858	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
115583	chr19	15871351	15871800	+	0	NA	Intergenic	Intergenic	-6651	NM_001302493	102724279		NM_001302493	ENSG00000291059	CLEC4OP	CLEC4O|LINC01835	C-type lectin domain family 4 member O, pseudogene	pseudo
176162	chr4	83252321	83253180	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	32048	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
139835	chr2	230430221	230430480	+	0	NA	intron (NM_001080391, intron 2 of 28)	intron (NM_001080391, intron 2 of 28)	13594	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
35920	chr11	2427871	2429200	+	0	NA	Intergenic	(GTG)n|Simple_repeat|Simple_repeat	-5490	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
76765	chr15	76990921	76991180	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-3630	NM_001321137	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
118508	chr19	35957971	35958300	+	0	NA	intron (NR_136525, intron 2 of 4)	intron (NR_136525, intron 2 of 4)	11020	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
68662	chr14	90256301	90257300	+	0	NA	intron (NM_002802, intron 1 of 10)	CpG	247	NM_002802	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
55508	chr12	105037201	105038200	+	0	NA	intron (NR_027752, intron 18 of 22)	intron (NR_027752, intron 18 of 22)	46758	NM_001034173	160428		NM_001034173	ENSG00000136010	ALDH1L2	mtFDH	aldehyde dehydrogenase 1 family member L2	protein-coding
135752	chr2	169574951	169575050	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-1079	NM_001322049	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
164645	chr3	66488471	66489000	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	11319	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
48034	chr12	6955771	6955930	+	0	NA	intron (NM_002831, intron 7 of 15)	intron (NM_002831, intron 7 of 15)	4494	NM_002831	5777		NM_002831	ENSG00000111679	PTPN6	HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1	protein tyrosine phosphatase non-receptor type 6	protein-coding
190777	chr6	520071	520250	+	0	NA	intron (NM_018303, intron 23 of 27)	CpG	128408	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
151867	chr22	18611451	18611800	+	0	NA	5' UTR (NM_015672, exon 1 of 1)	5' UTR (NM_015672, exon 1 of 1)	294	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
153656	chr22	28808751	28809450	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-8528	NM_005080	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
30008	chr10	73770171	73770500	+	0	NA	exon (NM_004922, exon 22 of 24)	exon (NM_004922, exon 22 of 24)	-1941	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
170456	chr3	185917771	185918330	+	0	NA	intron (NM_001243879, intron 7 of 7)	intron (NM_001243879, intron 7 of 7)	19964	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
70133	chr14	100270201	100270400	+	0	NA	intron (NM_003403, intron 2 of 4)	intron (NM_003403, intron 2 of 4)	-7057	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
161026	chr3	37974551	37975050	+	0	NA	intron (NM_005808, intron 5 of 6)	intron (NM_005808, intron 5 of 6)	5396	NR_029499	407015		NR_029499	ENSG00000199075	MIR26A1	MIR26A|MIRN26A1|mir-26a-1	microRNA 26a-1	ncRNA
21617	chr1	206573471	206574330	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	16736	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
31706	chr10	97647921	97648180	+	0	NA	intron (NM_018425, intron 1 of 8)	AluJr|SINE|Alu	7364	NM_018425	55361		NM_018425	ENSG00000155252	PI4K2A	NEDMSB|PI4KII|PIK42A	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
140534	chr2	233244501	233244900	+	0	NA	Intergenic	Intergenic	-6871	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
76790	chr15	77019871	77020600	+	0	NA	intron (NR_135552, intron 3 of 11)	intron (NR_135552, intron 3 of 11)	25109	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
183427	chr5	78367421	78367730	+	0	NA	intron (NM_001290229, intron 1 of 7)	MLT1H|LTR|ERVL-MaLR	6958	NM_004866	9522		NM_004866	ENSG00000085365	SCAMP1	SCAMP|SCAMP37	secretory carrier membrane protein 1	protein-coding
166854	chr3	123307771	123307930	+	0	NA	intron (NM_183357, intron 12 of 20)	intron (NM_183357, intron 12 of 20)	105907	NM_012430	26984		NM_012430	ENSG00000121542	SEC22A	SEC22L2	SEC22 homolog A, vesicle trafficking protein	protein-coding
182189	chr5	56813321	56813580	+	0	NA	Intergenic	Intergenic	-2099	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
26830	chr10	24619421	24619680	+	0	NA	exon (NM_020824, exon 9 of 26)	exon (NM_020824, exon 9 of 26)	3293	NR_160025	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
106630	chr18	22394521	22394780	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	23265	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
14227	chr1	143217351	143217600	+	0	NA	Intergenic	Intergenic	205117	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
212718	chr7	129799151	129799850	+	0	NA	Intergenic	Intergenic	-24486	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
98080	chr17	45578521	45579130	+	0	NA	Intergenic	AluSg|SINE|Alu	23037	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
153906	chr22	30309671	30310850	+	0	NA	intron (NM_001204240, intron 1 of 8)	MIR|SINE|MIR	16681	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
206136	chr7	27689571	27689830	+	0	NA	Intergenic	Intergenic	-26817	NM_152740	11112		NM_152740	ENSG00000106049	HIBADH	NS5ATP1	3-hydroxyisobutyrate dehydrogenase	protein-coding
99714	chr17	50872801	50873230	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-5037	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
215815	chr8	4854851	4855030	+	0	NA	intron (NM_033225, intron 1 of 69)	L1PA2|LINE|L1	139974	NM_033225	64478		NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding
69048	chr14	91865951	91866330	+	0	NA	intron (NM_001128596, intron 1 of 11)	intron (NM_001128596, intron 1 of 11)	1396	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
71849	chr15	22237271	22237830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12221	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
75841	chr15	69474021	69474280	+	0	NA	Intergenic	AluSz|SINE|Alu	21332	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
99675	chr17	50734351	50734650	+	0	NA	intron (NM_001330330, intron 1 of 10)	FAM|SINE|Alu	14897	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
223322	chr8	143820151	143820630	+	0	NA	intron (NM_001362897, intron 5 of 11)	intron (NM_001362897, intron 5 of 11)	-4617	NM_015356	23513		NM_015356	ENSG00000180900	SCRIB	CRIB1|SCRB1|SCRIB1|Vartul|oSCRIB	scribble planar cell polarity protein	protein-coding
238522	chrX	153690221	153690680	+	0	NA	exon (NM_001142805, exon 2 of 13)	exon (NM_001142805, exon 2 of 13)	939	NM_001142806	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
208288	chr7	66033421	66033950	+	0	NA	Intergenic	Intergenic	-42134	NM_001024943	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
27195	chr10	28566201	28566880	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	33422	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
205203	chr7	7764151	7764950	+	0	NA	intron (NM_001302350, intron 3 of 4)	intron (NM_001302350, intron 3 of 4)	-45943	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
120841	chr19	45512571	45512730	+	0	NA	intron (NM_003370, intron 1 of 12)	AluSx3|SINE|Alu	5171	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
75148	chr15	64615721	64616300	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	87271	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
34908	chr11	398101	399400	+	0	NA	intron (NM_007183, intron 4 of 12)	CpG-3734	4541	NM_007183	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
141736	chr2	241874651	241874950	+	0	NA	TTS (NM_173821)	TTS (NM_173821)	5071	NM_173821	285093		NM_173821	ENSG00000188011	RTP5	C2orf85|CXXC11|Z3CXXC5	receptor transporter protein 5 (putative)	protein-coding
78516	chr15	92941021	92941380	+	0	NA	intron (NM_001042572, intron 7 of 12)	AluSg|SINE|Alu	36801	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
109534	chr19	859021	859800	+	0	NA	promoter-TSS (NM_001317335)	promoter-TSS (NM_001317335)	-254	NM_001928	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
54520	chr12	92112621	92113350	+	0	NA	intron (NR_132341, intron 1 of 4)	AluSp|SINE|Alu	28728	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
163297	chr3	50336781	50338730	+	0	NA	promoter-TSS (NM_170713)	promoter-TSS (NM_170713)	244	NR_109831	102060282		NR_109831	ENSG00000281358	RASSF1-AS1	ANRASSF1	RASSF1 antisense RNA 1	ncRNA
48817	chr12	12111051	12111270	+	0	NA	promoter-TSS (NR_036262).2	promoter-TSS (NR_036262).2	-792	NR_036263	100422872		NR_036263	ENSG00000283429	MIR1244-3	-	microRNA 1244-3	ncRNA
38889	chr11	47394371	47396250	+	0	NA	Intergenic	Intergenic	-5660	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
219300	chr8	69946151	69946480	+	0	NA	Intergenic	Intergenic	-111337	NM_030958	81796		NM_030958	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15	solute carrier organic anion transporter family member 5A1	protein-coding
88441	chr16	84819521	84820580	+	0	NA	promoter-TSS (NM_031476)	promoter-TSS (NM_031476)	65	NM_031476	83716		NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2|LGL1	cysteine rich secretory protein LCCL domain containing 2	protein-coding
27408	chr10	31353471	31353880	+	0	NA	intron (NM_001323675, intron 1 of 6)	intron (NM_001323675, intron 1 of 6)	32015	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
19463	chr1	174954851	174955150	+	0	NA	promoter-TSS (NR_121196)	promoter-TSS (NR_121196)	-739	NR_121196	101928696		NR_121196	ENSG00000229531	RABGAP1L-AS1	-	RABGAP1L antisense RNA 1	ncRNA
94278	chr17	28709701	28710050	+	0	NA	5' UTR (NM_001366303, exon 1 of 5)	5' UTR (NM_001366303, exon 1 of 5)	229	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
27160	chr10	28393901	28394400	+	0	NA	Intergenic	Intergenic	-91086	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
201218	chr6	143545771	143546800	+	0	NA	Intergenic	Intergenic	15766	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
187087	chr5	140239521	140240380	+	0	NA	intron (NM_032412, intron 2 of 2)	intron (NM_032412, intron 2 of 2)	63151	NM_002622	5201		NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
187314	chr5	141615151	141616280	+	0	NA	intron (NM_005219, intron 1 of 27)	AluY|SINE|Alu	3285	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
51646	chr12	53014771	53015200	+	0	NA	intron (NM_001300821, intron 1 of 14)	intron (NM_001300821, intron 1 of 14)	8529	NM_001330654	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
188880	chr5	159458101	159458500	+	0	NA	intron (NR_027110, intron 4 of 6)	(CATT)n|Simple_repeat|Simple_repeat	7976	NR_027110	285627		NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
54671	chr12	93387621	93387980	+	0	NA	intron (NM_001301023, intron 1 of 4)	intron (NM_001301023, intron 1 of 4)	9222	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
16120	chr1	153646271	153646430	+	0	NA	TTS (NM_001206612)	TTS (NM_001206612)	-11989	NM_001024210	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
29226	chr10	69054571	69056130	+	0	NA	Intergenic	LTR45B|LTR|ERV1	-32253	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
87847	chr16	75657401	75657980	+	0	NA	TTS (NR_144545)	TTS (NR_144545)	9917	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
192478	chr6	24939351	24940230	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-3830	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
163122	chr3	50126601	50126930	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-25777	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
149090	chr21	15815301	15815500	+	0	NA	intron (NM_001352560, intron 9 of 23)	THE1A-int|LTR|ERVL-MaLR	85418	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
81994	chr16	11902301	11903100	+	0	NA	intron (NM_001130007, intron 1 of 14)	AluSx|SINE|Alu	13256	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
9362	chr1	47192801	47193250	+	0	NA	Intergenic	Intergenic	-2989	NM_005764	10158		NM_005764	ENSG00000162366	PDZK1IP1	DD96|MAP17|SPAP	PDZK1 interacting protein 1	protein-coding
47411	chr12	2888401	2888800	+	0	NA	non-coding (NR_046433, exon 2 of 2)	non-coding (NR_046433, exon 2 of 2)	-2291	NM_001160408	7289		NM_003324	ENSG00000078246	TULP3	HRCDF|TUBL3	TUB like protein 3	protein-coding
136784	chr2	181467051	181467530	+	0	NA	intron (NM_000885, intron 2 of 27)	intron (NM_000885, intron 2 of 27)	9904	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
158635	chr3	4981301	4982500	+	0	NA	intron (NM_003670, intron 4 of 4)	intron (NM_003670, intron 4 of 4)	-1939	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
41962	chr11	67348351	67348850	+	0	NA	intron (NR_024469, intron 2 of 3)	MIRb|SINE|MIR	4946	NM_021173	57804		NM_021173	ENSG00000175482	POLD4	POLDS|p12	DNA polymerase delta 4, accessory subunit	protein-coding
151438	chr21	46143571	46144730	+	0	NA	intron (NM_206965, intron 10 of 13)	LTR13|LTR|ERVK	-7225	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
28107	chr10	43394721	43395000	+	0	NA	intron (NM_001098204, intron 2 of 3)	intron (NM_001098204, intron 2 of 3)	1971	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
134486	chr2	143276751	143277050	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	147481	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
113721	chr19	10460801	10462030	+	0	NA	intron (NM_001111307, intron 11 of 14)	intron (NM_001111307, intron 11 of 14)	8483	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
181810	chr5	52737221	52737480	+	0	NA	Intergenic	Intergenic	-50566	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
210417	chr7	100049271	100050480	+	0	NA	promoter-TSS (NM_001362779)	promoter-TSS (NM_001362779)	81	NM_001362780	7589		NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
209510	chr7	76983271	76983430	+	0	NA	intron (NR_023383, intron 1 of 10)	AluJr|SINE|Alu	2528	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
159091	chr3	12462301	12462780	+	0	NA	Intergenic	Intergenic	-21892	NM_001321277	80746		NM_025265	ENSG00000154743	TSEN2	PCH2B|SEN2|SEN2L	tRNA splicing endonuclease subunit 2	protein-coding
197826	chr6	87825571	87826160	+	0	NA	intron (NR_110869, intron 2 of 4)	intron (NR_110869, intron 2 of 4)	41005	NR_110869	101928911		NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
119011	chr19	38901251	38902400	+	0	NA	intron (NR_040515, intron 1 of 4).2	AluJr|SINE|Alu	1856	NR_040515	4793		NM_002503	ENSG00000104825	NFKBIB	IKBB|TRIP9	NFKB inhibitor beta	protein-coding
206713	chr7	36527771	36527930	+	0	NA	intron (NM_001177506, intron 19 of 21)	intron (NM_001177506, intron 19 of 21)	72270	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
165882	chr3	106184021	106184380	+	0	NA	Intergenic	Intergenic	-314799	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
1336	chr1	2469001	2469500	+	0	NA	intron (NM_001303012, intron 1 of 21)	intron (NM_001303012, intron 1 of 21)	1799	NM_001303012	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
133773	chr2	127664621	127664880	+	0	NA	promoter-TSS (NM_017980)	promoter-TSS (NM_017980)	-157	NM_017980	55679		NM_017980	ENSG00000072163	LIMS2	LGMD2W|MDRCMTT|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
226578	chr9	72822321	72822600	+	0	NA	intron (NM_138691, intron 20 of 23)	intron (NM_138691, intron 20 of 23)	51649	NR_121180	101927258		NR_121120	ENSG00000236849	LINC01474	-	long intergenic non-protein coding RNA 1474	ncRNA
145108	chr20	38764851	38765150	+	0	NA	intron (NM_024855, intron 5 of 8)	intron (NM_024855, intron 5 of 8)	16540	NM_024855	79913		NM_024855	ENSG00000101442	ACTR5	Arp5|INO80M	actin related protein 5	protein-coding
39321	chr11	59101621	59102500	+	0	NA	Intergenic	Intergenic	-5125	NM_001142704	374393		NM_198947	ENSG00000189057	FAM111B	CANP|POIKTMP	FAM111 trypsin like peptidase B	protein-coding
148183	chr20	63544151	63545200	+	0	NA	intron (NM_080823, intron 1 of 7)	intron (NM_080823, intron 1 of 7)	2829	NM_080823	6725		NM_080823	ENSG00000125508	SRMS	C20orf148|PTK70|SRM|dJ697K14.1	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding
100090	chr17	58312971	58313130	+	0	NA	intron (NM_001261835, intron 16 of 31)	MER5A1|DNA|hAT-Charlie	-12400	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
210591	chr7	100373701	100374180	+	0	NA	intron (NM_178272, intron 1 of 5)	intron (NM_178272, intron 1 of 5)	453	NM_013439	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
108318	chr18	63421271	63423700	+	0	NA	promoter-TSS (NM_004869)	promoter-TSS (NM_004869)	-9	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
136683	chr2	181109021	181109280	+	0	NA	Intergenic	Intergenic	-14687	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
124876	chr2	8312021	8312380	+	0	NA	intron (NR_034135, intron 2 of 8)	intron (NR_034135, intron 2 of 8)	16219	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
99222	chr17	49578301	49578780	+	0	NA	intron (NM_007225, intron 1 of 1)	intron (NM_007225, intron 1 of 1)	2669	NM_007225	11248		NM_007225	ENSG00000182575	NXPH3	NPH3	neurexophilin 3	protein-coding
221740	chr8	127674571	127675130	+	0	NA	Intergenic	AluJb|SINE|Alu	59117	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
66930	chr14	65460701	65460900	+	0	NA	intron (NM_004480, intron 2 of 9)	MER110A|LTR|ERV1	-10302	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
52444	chr12	55926001	55927600	+	0	NA	intron (NM_032345, intron 1 of 2)	intron (NM_032345, intron 1 of 2)	325	NM_001143853	84305		NM_032345	ENSG00000170473	PYM1	PYM|WIBG	PYM homolog 1, exon junction complex associated factor	protein-coding
123923	chr19	55361851	55362380	+	0	NA	intron (NM_001145402, intron 3 of 10)	MSR1|Satellite|Satellite	1145	NM_001145402	284418		NM_001145402	ENSG00000180043	GARIN5B	C19orf16|FAM71E2	golgi associated RAB2 interactor family member 5B	protein-coding
133674	chr2	127074901	127075700	+	0	NA	intron (NM_139345, intron 2 of 15)	intron (NM_139345, intron 2 of 15)	6765	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
235304	chrX	42578071	42578250	+	0	NA	Intergenic	L1MB7|LINE|L1	200003	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
141113	chr2	238785001	238785250	+	0	NA	Intergenic	Intergenic	62782	NR_157851	100287387		NR_157851		LOC100287387	-	uncharacterized LOC100287387	ncRNA
101388	chr17	67360001	67360880	+	0	NA	intron (NM_002816, intron 1 of 10)	L2a|LINE|L2	6137	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
72602	chr15	36577821	36578080	+	0	NA	Intergenic	Intergenic	-1676	NM_001130010	84529		NM_032499	ENSG00000186073	CDIN1	C15orf41|HH114	CDAN1 interacting nuclease 1	protein-coding
206614	chr7	35840551	35840650	+	0	NA	intron (NM_001788, intron 2 of 12)	intron (NM_001788, intron 2 of 12)	39381	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
139769	chr2	230170601	230171000	+	0	NA	intron (NM_001378445, intron 17 of 18)	intron (NM_001378445, intron 17 of 18)	49184	NM_001378443	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
209767	chr7	87220301	87221580	+	0	NA	promoter-TSS (NM_001329474)	promoter-TSS (NM_001329474)	-353	NM_001329473	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
12810	chr1	109905951	109906700	+	0	NA	Intergenic	Intergenic	-4524	NM_172212	1435		NM_000757	ENSG00000184371	CSF1	CSF-1|MCSF|PG-M-CSF	colony stimulating factor 1	protein-coding
23005	chr1	226127701	226128200	+	0	NA	Intergenic	Intergenic	-20053	NR_146443	107985353		NR_146443	ENSG00000234478	ACBD3-AS1	-	ACBD3 antisense RNA 1	ncRNA
180185	chr5	1483801	1484200	+	0	NA	intron (NM_024830, intron 5 of 13)	intron (NM_024830, intron 5 of 13)	26856	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
235031	chrX	40061421	40062800	+	0	NA	intron (NM_001123384, intron 9 of 13)	(CCCCAGC)n|Simple_repeat|Simple_repeat	35848	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
199916	chr6	127877001	127877530	+	0	NA	intron (NM_001164687, intron 1 of 5).2	Tigger1|DNA|TcMar-Tigger	-22077	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
227140	chr9	86280501	86280950	+	0	NA	intron (NM_030940, intron 1 of 3)	AluJo|SINE|Alu	1813	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
170571	chr3	186811601	186811800	+	0	NA	non-coding (NR_125409, exon 4 of 4)	non-coding (NR_125409, exon 4 of 4)	-5005	NM_181573	5984		NM_002916	ENSG00000163918	RFC4	A1|RFC37	replication factor C subunit 4	protein-coding
36564	chr11	6648401	6648600	+	0	NA	intron (NM_003737, intron 1 of 20)	L2|LINE|L2	7309	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
127646	chr2	43150271	43150430	+	0	NA	Intergenic	MIRb|SINE|MIR	-47905	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
230414	chr9	128122451	128122900	+	0	NA	intron (NM_001256335, intron 6 of 7)	intron (NM_001256335, intron 6 of 7)	-3941	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
229553	chr9	122929951	122930150	+	0	NA	intron (NM_001304363, intron 1 of 1)	L2|LINE|L2	1215	NM_001304364	57684		NM_020924	ENSG00000171448	ZBTB26	ZNF481|bioref	zinc finger and BTB domain containing 26	protein-coding
29018	chr10	63628921	63629900	+	0	NA	Intergenic	Intergenic	-107520	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
226750	chr9	76180951	76181250	+	0	NA	intron (NM_006200, intron 15 of 20)	intron (NM_006200, intron 15 of 20)	213326	NM_018339	55312		NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
40328	chr11	63914821	63915280	+	0	NA	intron (NM_173587, intron 3 of 11)	intron (NM_173587, intron 3 of 11)	2114	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
153802	chr22	29641821	29642280	+	0	NA	intron (NM_181825, intron 3 of 15)	intron (NM_181825, intron 3 of 15)	38417	NM_181829	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
115231	chr19	14506571	14507730	+	0	NA	Intergenic	Intergenic	10712	NM_001300914	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
116787	chr19	18515651	18515750	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	6370	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
11025	chr1	84888851	84889150	+	0	NA	intron (NM_012152, intron 1 of 2)	intron (NM_012152, intron 1 of 2)	4206	NM_012152	23566		NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
100483	chr17	61551201	61551450	+	0	NA	Intergenic	Intergenic	39894	NM_199290	342538		NM_199290	ENSG00000253506	NACA2	ANAC|NACAL	nascent polypeptide associated complex subunit alpha 2	protein-coding
147713	chr20	62365701	62366100	+	0	NA	intron (NM_005560, intron 1 of 79)	intron (NM_005560, intron 1 of 79)	1412	NM_005560	3911		NM_005560	ENSG00000130702	LAMA5	BBDS2|NPHS26	laminin subunit alpha 5	protein-coding
79310	chr16	558121	558580	+	0	NA	Intergenic	Intergenic	-2044	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
87917	chr16	79257921	79258250	+	0	NA	Intergenic	Intergenic	342652	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
117463	chr19	19706951	19707250	+	0	NA	Intergenic	Intergenic	26012	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
8749	chr1	42704951	42705600	+	0	NA	Intergenic	L2|LINE|L2	22139	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
191075	chr6	3456381	3457500	+	0	NA	non-coding (NR_168069, exon 1 of 8)	intron (NR_147844, intron 1 of 1)	110	NM_001286456	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
42013	chr11	67411821	67412280	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-3628	NM_020811	57571		NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
53539	chr12	67288201	67288600	+	0	NA	intron (NM_001329674, intron 3 of 15)	AluSz|SINE|Alu	19042	NM_001329676	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
12940	chr1	110711771	110712380	+	0	NA	Intergenic	Intergenic	-37135	NM_002232	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
70355	chr14	101873601	101874230	+	0	NA	intron (NM_178587, intron 2 of 11)	L1MEc|LINE|L1	64052	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
116619	chr19	18288271	18288430	+	0	NA	Intergenic	Intergenic	6273	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
74681	chr15	62062251	62062350	+	0	NA	non-coding (NR_135690, exon 2 of 2)	non-coding (NR_135690, exon 2 of 2)	1797	NR_135690	101928907		NR_135690		VPS13C-DT	-	VPS13C divergent transcript	ncRNA
156699	chr22	41683921	41684380	+	0	NA	intron (NM_005008, intron 1 of 3)	AluSx|SINE|Alu	4717	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
96394	chr17	40134321	40134580	+	0	NA	3' UTR (NM_001012241, exon 10 of 10)	3' UTR (NM_001012241, exon 10 of 10)	-6087	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
113677	chr19	10395401	10396530	+	0	NA	exon (NM_007065, exon 2 of 8)	exon (NM_007065, exon 2 of 8)	7573	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
215307	chr7	157334401	157334600	+	0	NA	Intergenic	AluSx|SINE|Alu	-2504	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
182265	chr5	57199521	57200430	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluSz|SINE|Alu	-14099	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
197044	chr6	53361441	53362600	+	0	NA	Intergenic	Intergenic	-12841	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
224373	chr9	7944701	7944900	+	0	NA	Intergenic	Intergenic	-145022	NM_001318059	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
52055	chr12	54022621	54022980	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	-5640	NM_004503	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
239211	chrY	12924301	12924900	+	0	NA	Intergenic	HUERS-P2-int|LTR|ERV1	18895	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
152035	chr22	19474421	19474800	+	0	NA	intron (NM_005659, intron 3 of 11)	L2|LINE|L2	4583	NM_005659	7353		NM_005659	ENSG00000070010	UFD1	UFD1L	ubiquitin recognition factor in ER associated degradation 1	protein-coding
147614	chr20	62133451	62133550	+	0	NA	intron (NM_144703, intron 8 of 8)	intron (NM_144703, intron 8 of 8)	9894	NM_002792	5688		NM_002792	ENSG00000101182	PSMA7	C6|HEL-S-276|HSPC|RC6-1|XAPC7	proteasome 20S subunit alpha 7	protein-coding
127990	chr2	46939371	46940080	+	0	NA	intron (NM_001288953, intron 2 of 20)	intron (NM_001288953, intron 2 of 20)	-1499	NM_001288955	57217		NM_020458	ENSG00000068724	TTC7A	GIDID|MINAT|TTC7	tetratricopeptide repeat domain 7A	protein-coding
38676	chr11	46476271	46476430	+	0	NA	intron (NR_160027, intron 10 of 18)	MamRep1879|DNA|hAT-Tip100?	-24461	NR_036117	100422827		NR_036117	ENSG00000265014	MIR3160-1	mir-3160-1	microRNA 3160-1	ncRNA
149483	chr21	32258371	32258630	+	0	NA	Intergenic	Intergenic	20549	NM_018944	54069		NM_018944	ENSG00000159055	MIS18A	B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha	MIS18 kinetochore protein A	protein-coding
150333	chr21	42079371	42079530	+	0	NA	intron (NM_173568, intron 2 of 21)	intron (NM_173568, intron 2 of 21)	8133	NM_001004416	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
61647	chr13	73902371	73902530	+	0	NA	intron (NM_007249, intron 3 of 7)	MIRb|SINE|MIR	231479	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
47210	chr12	849401	849600	+	0	NA	intron (NM_018979, intron 4 of 27)	intron (NM_018979, intron 4 of 27)	83576	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
53768	chr12	68686401	68687600	+	0	NA	promoter-TSS (NR_038930)	promoter-TSS (NR_038930)	22	NM_001330192	57122		NM_020401	ENSG00000111581	NUP107	NPHS11|NUP84|ODG6|ODG6; GAMOS7	nucleoporin 107	protein-coding
43637	chr11	84720651	84720950	+	0	NA	5' UTR (NM_001351276, exon 1 of 23)	5' UTR (NM_001351276, exon 1 of 23)	142	NM_001351276	1740		NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
222220	chr8	133071771	133072450	+	0	NA	intron (NM_001045557, intron 1 of 7)	intron (NM_001045557, intron 1 of 7)	-11756	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
134722	chr2	144521001	144521200	+	0	NA	promoter-TSS (NR_033258)	promoter-TSS (NR_033258)	-768	NR_110570	101928455		NR_110570	ENSG00000232606	LINC01412	-	long intergenic non-protein coding RNA 1412	ncRNA
165986	chr3	108087071	108088000	+	0	NA	intron (NM_198793, intron 1 of 8)	intron (NM_198793, intron 1 of 8)	3496	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
174546	chr4	40205281	40206000	+	0	NA	intron (NM_001278362, intron 2 of 3)	intron (NM_001278362, intron 2 of 3)	8609	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
197922	chr6	89510051	89510150	+	0	NA	intron (NM_014942, intron 1 of 15)	MLT1I|LTR|ERVL-MaLR	-52218	NM_001242811	22881		NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
99174	chr17	49416771	49416930	+	0	NA	Intergenic	HY1|scRNA|scRNA	-1945	NM_001281715	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
80992	chr16	4029801	4030000	+	0	NA	intron (NM_001116, intron 2 of 10)	L1ME3A|LINE|L1	-79456	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
32798	chr10	109817851	109818030	+	0	NA	Intergenic	L1HS|LINE|L1	105306	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
88240	chr16	82311701	82311900	+	0	NA	Intergenic	Intergenic	-141576	NM_005792	10200		NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
27694	chr10	33136151	33137750	+	0	NA	Intergenic	Intergenic	-20143	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
205517	chr7	18320851	18321350	+	0	NA	intron (NM_001321896, intron 1 of 12)	intron (NM_001321896, intron 1 of 12)	31008	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
80823	chr16	3474201	3474400	+	0	NA	intron (NM_001317095, intron 1 of 5)	intron (NM_001317095, intron 1 of 5)	11169	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
135519	chr2	162063471	162064170	+	0	NA	intron (NR_166824, intron 2 of 25)	L2a|LINE|L2	10395	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
35656	chr11	1859651	1859750	+	0	NA	promoter-TSS (NR_036185)	promoter-TSS (NR_036185)	-164	NR_036185	100423021		NR_036185	ENSG00000264493	MIR4298	-	microRNA 4298	ncRNA
145097	chr20	38727301	38728280	+	0	NA	exon (NM_080552, exon 2 of 2)	exon (NM_080552, exon 2 of 2)	3304	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
56300	chr12	112407451	112407850	+	0	NA	intron (NM_001320139, intron 3 of 6)	intron (NM_001320139, intron 3 of 6)	1635	NM_001320139	6128		NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1|eL6	ribosomal protein L6	protein-coding
186481	chr5	138077021	138077630	+	0	NA	Intergenic	Intergenic	-6567	NM_058244	7478		NM_031933	ENSG00000061492	WNT8A	WNT8D	Wnt family member 8A	protein-coding
33050	chr10	110860071	110861230	+	0	NA	Intergenic	Intergenic	10254	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
180269	chr5	1789421	1789830	+	0	NA	Intergenic	MER51A|LTR|ERV1	10212	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
172326	chr4	1683371	1685230	+	0	NA	promoter-TSS (NM_001013622)	promoter-TSS (NM_001013622)	13	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
150039	chr21	37370351	37371380	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	3308	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
70406	chr14	102005251	102005550	+	0	NA	intron (NM_001376, intron 26 of 77)	intron (NM_001376, intron 26 of 77)	40827	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
40964	chr11	65357251	65357630	+	0	NA	3' UTR (NM_145719, exon 2 of 2)	3' UTR (NM_145719, exon 2 of 2)	2689	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
147136	chr20	54646951	54647050	+	0	NA	intron (NM_177959, intron 7 of 7)	intron (NM_177959, intron 7 of 7)	171407	NM_001294161	55816		NM_018431	ENSG00000101134	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding
55192	chr12	101323751	101324230	+	0	NA	intron (NM_014503, intron 25 of 61)	AluSg|SINE|Alu	43885	NM_014503	27340		NM_014503	ENSG00000120800	UTP20	1A6/DRIM|DRIM	UTP20 small subunit processome component	protein-coding
164173	chr3	56792171	56793000	+	0	NA	intron (NM_001289698, intron 2 of 10)	MIRc|SINE|MIR	9364	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
103741	chr17	78890351	78891030	+	0	NA	exon (NM_001243541, exon 3 of 3)	exon (NM_001243541, exon 3 of 3)	12511	NM_001243540	100653515		NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
224079	chr9	4298971	4300030	+	0	NA	5' UTR (NM_001042413, exon 1 of 11)	5' UTR (NM_001042413, exon 1 of 11)	568	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
205760	chr7	23517571	23517930	+	0	NA	intron (NM_013293, intron 2 of 7)	AluSc|SINE|Alu	14231	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
130430	chr2	85392371	85392980	+	0	NA	TTS (NR_138132)	TTS (NR_138132)	17157	NM_001320732	822		NM_001747	ENSG00000042493	CAPG	AFCP|HEL-S-66|MCP	capping actin protein, gelsolin like	protein-coding
219539	chr8	76991821	76992280	+	0	NA	intron (NM_001172086, intron 2 of 4)	intron (NM_001172086, intron 2 of 4)	8028	NM_000318	5828		NM_000318	ENSG00000164751	PEX2	PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3	peroxisomal biogenesis factor 2	protein-coding
48947	chr12	12730601	12731030	+	0	NA	intron (NM_001130415, intron 1 of 1)	MIR|SINE|MIR	4898	NM_001130415	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
84092	chr16	29618771	29618930	+	0	NA	Intergenic	Intergenic	-5133	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
167875	chr3	134794921	134795650	+	0	NA	promoter-TSS (NM_004441)	promoter-TSS (NM_004441)	25	NM_004441	2047		NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
214708	chr7	150999371	151000350	+	0	NA	intron (NM_001160109, intron 8 of 13)	intron (NM_001160109, intron 8 of 13)	6056	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
132891	chr2	111316721	111317730	+	0	NA	intron (NR_136161, intron 3 of 5)	intron (NR_136161, intron 3 of 5)	3861	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
199812	chr6	127513601	127513800	+	0	NA	intron (NM_001012279, intron 3 of 11)	MIRb|SINE|MIR	5324	NM_001012279	387104		NM_001012279	ENSG00000214338	MTCL3	C6orf174|SOGA3|dJ403A15.3	MTCL family member 3	protein-coding
80781	chr16	3198371	3198530	+	0	NA	intron (NM_001370639, intron 3 of 3)	intron (NM_001370639, intron 3 of 3)	9328	NM_012360	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
167340	chr3	128751971	128752230	+	0	NA	intron (NM_004637, intron 1 of 5)	THE1B|LTR|ERVL-MaLR	25917	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
190621	chr5	181189401	181190400	+	0	NA	Intergenic	CpG	2008	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
64632	chr14	31126201	31126800	+	0	NA	intron (NM_015382, intron 26 of 42)	intron (NM_015382, intron 26 of 42)	81293	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
236	chr1	898401	899150	+	0	NA	Intergenic	Intergenic	20917	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
17619	chr1	156927301	156928030	+	0	NA	intron (NM_144702, intron 7 of 14)	CpG-1861	7033	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
124972	chr2	8835221	8835830	+	0	NA	intron (NR_145965, intron 1 of 29)	intron (NR_145965, intron 1 of 29)	2088	NM_001348740	57498		NM_020738	ENSG00000134313	KIDINS220	ARMS|SINO|VENARG	kinase D interacting substrate 220	protein-coding
49001	chr12	14166951	14167250	+	0	NA	Intergenic	Intergenic	-185498	NM_000834	2904		NM_000834	ENSG00000273079	GRIN2B	DEE27|EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3	glutamate ionotropic receptor NMDA type subunit 2B	protein-coding
75911	chr15	70087471	70087630	+	0	NA	intron (NM_001282982, intron 2 of 17)	intron (NM_001282982, intron 2 of 17)	7239	NM_001282982	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
71919	chr15	22789221	22790130	+	0	NA	intron (NM_144599, intron 1 of 4)	MER50|LTR|ERV1	3031	NM_144599	123606		NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
139381	chr2	221572001	221572900	+	0	NA	promoter-TSS (NM_001304537)	promoter-TSS (NM_001304537)	-146	NM_001363748	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
161844	chr3	45695351	45695450	+	0	NA	intron (NM_001319073, intron 2 of 20)	AluSz|SINE|Alu	6004	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
93859	chr17	21020171	21020700	+	0	NA	intron (NM_015276, intron 3 of 12)	intron (NM_015276, intron 3 of 12)	22576	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
92339	chr17	8162501	8163700	+	0	NA	promoter-TSS (NM_014232)	promoter-TSS (NM_014232)	-152	NM_014232	6844		NM_014232	ENSG00000220205	VAMP2	NEDHAHM|SYB2|VAMP-2	vesicle associated membrane protein 2	protein-coding
205491	chr7	17903401	17903950	+	0	NA	intron (NM_015132, intron 1 of 25)	MIR3|SINE|MIR	36819	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
87725	chr16	75105901	75106300	+	0	NA	intron (NM_032268, intron 3 of 4)	intron (NM_032268, intron 3 of 4)	10672	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
44064	chr11	95337271	95338380	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-105350	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
92137	chr17	7625971	7626280	+	0	NA	TTS (NM_001320846)	TTS (NM_001320846)	1696	NM_133491	112483		NM_133491	ENSG00000141504	SAT2	SSAT-2|SSAT2	spermidine/spermine N1-acetyltransferase family member 2	protein-coding
78636	chr15	94253551	94254050	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	22239	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
132397	chr2	105787451	105788330	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	42827	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
202399	chr6	157866401	157866600	+	0	NA	intron (NM_016224, intron 1 of 17)	AluJb|SINE|Alu	43254	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
226882	chr9	78233801	78234000	+	0	NA	Intergenic	L2c|LINE|L2	-2175	NM_001098802	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
194629	chr6	33575301	33575950	+	0	NA	intron (NM_001188, intron 3 of 5)	intron (NM_001188, intron 3 of 5)	4651	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
6950	chr1	31754951	31755450	+	0	NA	intron (NM_001294336, intron 4 of 31)	intron (NM_001294336, intron 4 of 31)	3535	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
170820	chr3	189570921	189571180	+	0	NA	Intergenic	MIRc|SINE|MIR	-25696	NM_001329964	8626		NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
96024	chr17	39244421	39245480	+	0	NA	intron (NR_164152, intron 8 of 9)	intron (NR_164152, intron 8 of 9)	7180	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
188519	chr5	155746371	155746830	+	0	NA	Intergenic	LTR60B|LTR|ERV1	-580564	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
181660	chr5	50420121	50420500	+	0	NA	intron (NM_198449, intron 2 of 8)	intron (NM_198449, intron 2 of 8)	20978	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
64415	chr14	24179251	24179850	+	0	NA	TTS (NR_051979)	TTS (NR_051979)	7470	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
62978	chr13	112297371	112297730	+	0	NA	Intergenic	Intergenic	-15917	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
44998	chr11	116987851	116988480	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluY|SINE|Alu	110263	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
209889	chr7	91913051	91913400	+	0	NA	Intergenic	HAL1|LINE|L1	-27637	NM_147185	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
8414	chr1	40422101	40422750	+	0	NA	3' UTR (NM_001198979, exon 10 of 10)	3' UTR (NM_001198979, exon 10 of 10)	25625	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
139887	chr2	230678251	230678550	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	22129	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
415	chr1	1077451	1077550	+	0	NA	Intergenic	CpG	-3194	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
89378	chr16	88796521	88796780	+	0	NA	Intergenic	L2b|LINE|L2	-7139	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
2723	chr1	10657901	10658300	+	0	NA	intron (NM_017766, intron 7 of 15)	FLAM_C|SINE|Alu	138546	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
164720	chr3	68088221	68089280	+	0	NA	intron (NM_213609, intron 2 of 4)	L2c|LINE|L2	84503	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
236565	chrX	72303071	72303230	+	0	NA	intron (NM_001144886, intron 1 of 2)	intron (NM_001144886, intron 1 of 2)	2764	NM_001144887	4435		NM_004143	ENSG00000125931	CITED1	MSG1	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1	protein-coding
86356	chr16	66523601	66524310	+	0	NA	intron (NR_073520, intron 5 of 8)	intron (NR_073520, intron 5 of 8)	26167	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
181589	chr5	43382851	43382950	+	0	NA	intron (NM_148672, intron 2 of 2)	AluSq2|SINE|Alu	14237	NM_001301875	56477		NM_019846	ENSG00000151882	CCL28	CCK1|MEC|SCYA28	C-C motif chemokine ligand 28	protein-coding
21537	chr1	205973201	205973600	+	0	NA	intron (NR_110983, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	15475	NR_110982	103021295		NR_110982		LOC103021295	-	uncharacterized LOC103021295	ncRNA
11360	chr1	89628521	89628780	+	0	NA	intron (NR_033981, intron 2 of 2)	MER39B|LTR|ERV1	4244	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
154031	chr22	30455551	30456150	+	0	NA	intron (NM_001376914, intron 12 of 12)	intron (NM_001376914, intron 12 of 12)	16167	NM_174975	266629		NM_174975	ENSG00000100012	SEC14L3	TAP2	SEC14 like lipid binding 3	protein-coding
179053	chr4	165326921	165328350	+	0	NA	promoter-TSS (NM_001017369)	promoter-TSS (NM_001017369)	-31	NM_001017369	6307		NM_006745	ENSG00000052802	MSMO1	DESP4|ERG25|MCCPD|SC4MOL	methylsterol monooxygenase 1	protein-coding
5504	chr1	25766351	25767280	+	0	NA	intron (NM_001385185, intron 6 of 10)	intron (NM_001385185, intron 6 of 10)	-33378	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
184261	chr5	96713151	96713450	+	0	NA	intron (NM_173060, intron 1 of 28)	AluSc8|SINE|Alu	10640	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
129477	chr2	69590001	69590550	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	53463	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
156970	chr22	42439821	42440430	+	0	NA	Intergenic	Intergenic	-2139	NM_001371362	150372		NM_145912	ENSG00000235568	NFAM1	CNAIP	NFAT activating protein with ITAM motif 1	protein-coding
220071	chr8	93936651	93936750	+	0	NA	Intergenic	AluSx|SINE|Alu	19753	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
60854	chr13	45615521	45615780	+	0	NA	promoter-TSS (NM_182542)	promoter-TSS (NM_182542)	89	NM_182542	220081		NM_182542	ENSG00000165837	ERICH6B	FAM194B	glutamate rich 6B	protein-coding
157265	chr22	43945751	43946350	+	0	NA	intron (NM_025225, intron 8 of 8)	intron (NM_025225, intron 8 of 8)	-9392	NM_015380	25813		NM_015380	ENSG00000100347	SAMM50	CGI-51|OMP85|SAM50|TOB55|TRG-3|YNL026W	SAMM50 sorting and assembly machinery component	protein-coding
187035	chr5	139797301	139798130	+	0	NA	intron (NM_032289, intron 1 of 14)	MIRb|SINE|MIR	1907	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
154304	chr22	31948351	31948750	+	0	NA	intron (NM_003405, intron 1 of 1)	AluJr|SINE|Alu	-3188	NM_015372	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
73946	chr15	51729921	51730180	+	0	NA	intron (NM_001143917, intron 1 of 2)	intron (NM_001143917, intron 1 of 2)	7012	NM_001363969	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
216098	chr8	11059171	11059800	+	0	NA	intron (NM_173683, intron 1 of 2)	CpG	7604	NR_134308	101929269		NR_134308	ENSG00000254839	LOC101929269	-	uncharacterized LOC101929269	ncRNA
62741	chr13	106561771	106562580	+	0	NA	intron (NM_018011, intron 1 of 3)	intron (NM_018011, intron 1 of 3)	5962	NM_018011	55082		NM_018011	ENSG00000134884	ARGLU1	-	arginine and glutamate rich 1	protein-coding
206864	chr7	37448401	37450050	+	0	NA	promoter-TSS (NM_014800)	promoter-TSS (NM_014800)	101	NM_001206480	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
205336	chr7	12637921	12638430	+	0	NA	intron (NM_033128, intron 8 of 13)	intron (NM_033128, intron 8 of 13)	48652	NM_033128	85477		NM_033128	ENSG00000006747	SCIN	-	scinderin	protein-coding
40098	chr11	62798451	62798880	+	0	NA	3' UTR (NM_001081491, exon 10 of 20)	3' UTR (NM_001081491, exon 10 of 20)	-5894	NR_106769	102465257		NR_106769	ENSG00000274066	MIR6514	hsa-mir-6514|mir-6514	microRNA 6514	ncRNA
41796	chr11	66861971	66862850	+	0	NA	intron (NM_022172, intron 10 of 20)	intron (NM_022172, intron 10 of 20)	5346	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
89667	chr16	89368151	89368250	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	47748	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
11395	chr1	89673701	89674500	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	40980	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
3054	chr1	12161151	12162630	+	0	NA	Intergenic	Intergenic	-5053	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
178125	chr4	141772021	141772480	+	0	NA	Intergenic	Intergenic	135667	NR_037840	3600		NM_000585	ENSG00000164136	IL15	IL-15	interleukin 15	protein-coding
113858	chr19	10647121	10647800	+	0	NA	Intergenic	Intergenic	6412	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
137342	chr2	196141871	196142350	+	0	NA	intron (NM_004226, intron 5 of 7)	AluSq2|SINE|Alu	29468	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
236472	chrX	71613701	71614550	+	0	NA	TTS (NM_052957)	TTS (NM_052957)	4386	NM_001142797	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
175362	chr4	70559271	70559430	+	0	NA	Intergenic	Intergenic	-32906	NM_016519	258		NM_016519	ENSG00000178522	AMBN	AI1F	ameloblastin	protein-coding
103412	chr17	78211471	78211830	+	0	NA	Intergenic	Intergenic	-2603	NM_001012271	332		NM_001168	ENSG00000089685	BIRC5	API4|EPR-1	baculoviral IAP repeat containing 5	protein-coding
146971	chr20	52619251	52619350	+	0	NA	Intergenic	Intergenic	-1538	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
160432	chr3	28317501	28318050	+	0	NA	intron (NR_138585, intron 3 of 3)	MIRb|SINE|MIR	-30946	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
5736	chr1	26431551	26432780	+	0	NA	promoter-TSS (NM_001319959)	promoter-TSS (NM_001319959)	-117	NM_001319959	79947		NM_024887	ENSG00000117682	DHDDS	CIT|CPT|DEDSM|DS|HDS|RP59|hCIT	dehydrodolichyl diphosphate synthase subunit	protein-coding
127679	chr2	43193071	43193630	+	0	NA	Intergenic	(GTGT)n|Simple_repeat|Simple_repeat	33256	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
119005	chr19	38894971	38895130	+	0	NA	promoter-TSS (NR_034146)	promoter-TSS (NR_034146)	-895	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
144030	chr20	33494271	33494430	+	0	NA	intron (NM_001032999, intron 1 of 10)	AluY|SINE|Alu	4254	NM_001032999	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
91620	chr17	5391621	5392080	+	0	NA	intron (NM_002532, intron 9 of 16)	intron (NM_002532, intron 9 of 16)	-27791	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
165578	chr3	101568671	101568830	+	0	NA	Intergenic	L2a|LINE|L2	-5344	NM_001320399	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
98559	chr17	47698761	47700160	+	0	NA	exon (NM_014726, exon 5 of 9)	exon (NM_014726, exon 5 of 9)	4196	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
197450	chr6	75204351	75204680	+	0	NA	intron (NM_080645, intron 1 of 50)	intron (NM_080645, intron 1 of 50)	1538	NM_004370	1303		NM_004370	ENSG00000111799	COL12A1	BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2	collagen type XII alpha 1 chain	protein-coding
19969	chr1	184953721	184954680	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	20308	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
169757	chr3	172550601	172551330	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-27535	NM_003810	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
236104	chrX	56978071	56978430	+	0	NA	intron (NR_027139, intron 4 of 4)	LTR104_Mam|LTR|Gypsy	17291	NM_001010862	169981		NM_001010862	ENSG00000204271	SPIN3	SPIN-3|TDRD27|bA445O16.1	spindlin family member 3	protein-coding
158687	chr3	5192801	5194000	+	0	NA	intron (NM_014674, intron 1 of 11)	intron (NM_014674, intron 1 of 11)	5693	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
69583	chr14	97185301	97185580	+	0	NA	Intergenic	Intergenic	30583	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
30713	chr10	80860171	80860330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	210453	NR_155749	105378386		NR_155749	ENSG00000231082	LINC02655	-	long intergenic non-protein coding RNA 2655	ncRNA
225854	chr9	38164771	38164930	+	0	NA	Intergenic	Intergenic	-95623	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
215801	chr8	2219351	2219850	+	0	NA	Intergenic	Intergenic	143011	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
91571	chr17	5189301	5189700	+	0	NA	intron (NM_032530, intron 1 of 1)	AluJr|SINE|Alu	2368	NM_032530	84622		NM_032530	ENSG00000180626	ZNF594	-	zinc finger protein 594	protein-coding
95579	chr17	36950401	36950600	+	0	NA	intron (NM_012138, intron 2 of 11)	intron (NM_012138, intron 2 of 11)	1546	NM_012138	26574		NM_012138	ENSG00000275700	AATF	BFR2|CHE-1|CHE1|DED	apoptosis antagonizing transcription factor	protein-coding
216066	chr8	10424821	10425460	+	0	NA	intron (NM_001199729, intron 6 of 6).2	intron (NM_001199729, intron 6 of 6).2	-49425	NR_120604	101929191		NR_120604	ENSG00000253641	LINC03022	LINCR-0001	long intergenic non-protein coding RNA 3022	ncRNA
94546	chr17	29587851	29588280	+	0	NA	intron (NM_001085454, intron 1 of 20)	intron (NM_001085454, intron 1 of 20)	1583	NM_014030	28964		NM_014030	ENSG00000108262	GIT1	p95-APP1	GIT ArfGAP 1	protein-coding
104594	chr17	81401401	81402300	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-1072	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
179359	chr4	183398101	183399430	+	0	NA	Intergenic	CpG	-45871	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
84322	chr16	30163571	30163730	+	0	NA	Intergenic	Intergenic	-19760	NM_001193333	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
137193	chr2	191146971	191147130	+	0	NA	intron (NM_003151, intron 2 of 23)	L1MB3|LINE|L1	3944	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
49873	chr12	38328321	38328650	+	0	NA	3' UTR (NM_001308340, exon 3 of 3)	3' UTR (NM_001308340, exon 3 of 3)	11711	NM_001013620	144245		NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10 alpha-1,2-glucosyltransferase B	protein-coding
210638	chr7	100466721	100467150	+	0	NA	non-coding (NR_130119, exon 5 of 5)	non-coding (NR_130119, exon 5 of 5)	-2675	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
146308	chr20	49184071	49184530	+	0	NA	intron (NM_001322929, intron 1 of 14)	MER6A|DNA|TcMar-Tigger	4034	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
151617	chr22	12279671	12279850	+	0	NA	Intergenic	Intergenic	382354	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
18184	chr1	160829701	160829900	+	0	NA	TTS (NM_016382)	TTS (NM_016382)	33087	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
111697	chr19	4279171	4279700	+	0	NA	5' UTR (NM_020209, exon 1 of 6)	5' UTR (NM_020209, exon 1 of 6)	169	NM_020209	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
85740	chr16	56681951	56683200	+	0	NA	intron (NM_005952, intron 1 of 2)	intron (NM_005952, intron 1 of 2)	105	NM_005952	4501		NM_005952	ENSG00000187193	MT1X	MT-1l|MT1	metallothionein 1X	protein-coding
181948	chr5	55023601	55024400	+	0	NA	promoter-TSS (NM_002104)	promoter-TSS (NM_002104)	169	NR_104662	102467081		NR_104662		LOC102467081	-	uncharacterized LOC102467081	ncRNA
20954	chr1	202311621	202311950	+	0	NA	intron (NM_021636, intron 16 of 17)	intron (NM_021636, intron 16 of 17)	30151	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
193095	chr6	28884251	28885600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11605	NR_104117	414760		NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14	ncRNA
189973	chr5	177443801	177444000	+	0	NA	intron (NR_038916, intron 1 of 2)	intron (NR_038916, intron 1 of 2)	-2095	NM_001375593	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
87652	chr16	74576171	74576530	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	30764	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
144217	chr20	34365801	34366650	+	0	NA	intron (NM_031483, intron 1 of 24)	intron (NM_031483, intron 1 of 24)	2952	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
224046	chr9	3507151	3508000	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	-18141	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
108975	chr18	79633671	79634100	+	0	NA	Intergenic	Intergenic	45860	NR_136643	284241		NM_182570	ENSG00000178412	CTDP1-DT	-	CTDP1 divergent transcript	ncRNA
58839	chr12	132874201	132874950	+	0	NA	intron (NM_018223, intron 3 of 17)	intron (NM_018223, intron 3 of 17)	13030	NM_001161346	55743		NM_018223	ENSG00000072609	CHFR	RNF116|RNF196	checkpoint with forkhead and ring finger domains	protein-coding
86405	chr16	66747701	66748280	+	0	NA	intron (NM_001323955, intron 2 of 11)	intron (NM_001323955, intron 2 of 11)	3619	NM_006141	1783		NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding
86891	chr16	67998421	67999950	+	0	NA	intron (NM_022355, intron 1 of 10)	LTR12C|LTR|ERV1	299	NM_022355	64174		NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
200395	chr6	134351521	134352280	+	0	NA	Intergenic	Intergenic	-33842	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
22171	chr1	212256051	212257100	+	0	NA	intron (NR_125984, intron 1 of 3)	intron (NR_125984, intron 1 of 3)	-21839	NR_125982	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
180137	chr5	1331321	1331750	+	0	NA	intron (NM_030782, intron 8 of 16)	intron (NM_030782, intron 8 of 16)	13564	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
151789	chr22	18151851	18152230	+	0	NA	intron (NM_017414, intron 1 of 10)	AluY|SINE|Alu	1870	NM_017414	11274		NM_017414	ENSG00000184979	USP18	ISG43|PTORCH2|UBP43	ubiquitin specific peptidase 18	protein-coding
139506	chr2	224542321	224542780	+	0	NA	intron (NM_001257197, intron 1 of 14)	AluJr|SINE|Alu	27405	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
202093	chr6	154510401	154510800	+	0	NA	promoter-TSS (NM_001368117)	promoter-TSS (NM_001368117)	85	NM_001368117	154043		NM_173515	ENSG00000153721	CNKSR3	CNK3|CNK3/IPCEF1|MAGI1	CNKSR family member 3	protein-coding
4694	chr1	23099971	23101130	+	0	NA	intron (NM_033631, intron 3 of 4)	intron (NM_033631, intron 3 of 4)	56245	NR_036057	100422866		NR_036057	ENSG00000263793	MIR3115	mir-3115	microRNA 3115	ncRNA
24542	chr1	244853601	244854450	+	0	NA	TTS (NR_132782)	TTS (NR_132782)	192	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
54209	chr12	79907501	79907900	+	0	NA	intron (NM_001143885, intron 2 of 25)	AluJr4|SINE|Alu	6211	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
86198	chr16	57994671	57995530	+	0	NA	3' UTR (NM_001384367, exon 3 of 3)	3' UTR (NM_001384367, exon 3 of 3)	-4503	NM_001330568	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
237943	chrX	132491001	132491650	+	0	NA	Intergenic	Intergenic	-1290	NM_001170704	55796		NM_018388	ENSG00000076770	MBNL3	CHCR|MBLX|MBLX39|MBXL	muscleblind like splicing regulator 3	protein-coding
183969	chr5	88683221	88684250	+	0	NA	intron (NR_146284, intron 1 of 3)	intron (NR_146284, intron 1 of 3)	1090	NR_152236	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
37815	chr11	33036451	33036780	+	0	NA	Intergenic	Intergenic	-2957	NM_018393	55346		NM_018393	ENSG00000176148	TCP11L1	dJ85M6.3	t-complex 11 like 1	protein-coding
174579	chr4	40240301	40241050	+	0	NA	intron (NM_001278364, intron 3 of 4)	AluSz|SINE|Alu	43644	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
50870	chr12	49182931	49183830	+	0	NA	Intergenic	AluSx1|SINE|Alu	5700	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
142513	chr20	4821321	4821580	+	0	NA	intron (NM_014737, intron 2 of 11)	intron (NM_014737, intron 2 of 11)	2158	NM_014737	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
221625	chr8	125727521	125727780	+	0	NA	Intergenic	Intergenic	223547	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
228428	chr9	99811371	99811980	+	0	NA	intron (NR_109802, intron 1 of 6)	intron (NR_109802, intron 1 of 6)	8214	NR_109802	101928438		NR_109802	ENSG00000237461	LOC101928438	-	uncharacterized LOC101928438	ncRNA
134895	chr2	149069071	149069830	+	0	NA	intron (NM_001317006, intron 1 of 4)	intron (NM_001317006, intron 1 of 4)	-8072	NM_001317004	130576		NM_177964	ENSG00000150556	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
24054	chr1	235301021	235301930	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJb|SINE|Alu	-25741	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
168041	chr3	136915451	136915780	+	0	NA	intron (NM_001291999, intron 1 of 3)	MSTA|LTR|ERVL-MaLR	-14887	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
158719	chr3	8421451	8421550	+	0	NA	intron (NR_033378, intron 3 of 3)	MER20|DNA|hAT-Charlie	80158	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
118799	chr19	38433421	38433850	+	0	NA	promoter-TSS (NM_001042723)	promoter-TSS (NM_001042723)	-56	NM_001042723	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
215665	chr8	664821	665730	+	0	NA	intron (NM_207332, intron 5 of 5)	CpG	65949	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
22878	chr1	225783601	225783800	+	0	NA	intron (NM_003133, intron 2 of 2)	intron (NM_003133, intron 2 of 2)	5874	NM_003133	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
129499	chr2	69626521	69626930	+	0	NA	intron (NM_001371577, intron 2 of 14)	AluJb|SINE|Alu	17013	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
231741	chr9	132079351	132080080	+	0	NA	exon (NM_004269, exon 1 of 8)	exon (NM_004269, exon 1 of 8)	152	NM_001253882	9442		NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|NEDSCAC|TRAP37	mediator complex subunit 27	protein-coding
21948	chr1	207910901	207911300	+	0	NA	promoter-TSS (NM_001025109)	promoter-TSS (NM_001025109)	25	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
15660	chr1	150878071	150878230	+	0	NA	Intergenic	AluSx|SINE|Alu	-1551	NM_178427	405		NM_001668	ENSG00000143437	ARNT	ARNT1|HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2	aryl hydrocarbon receptor nuclear translocator	protein-coding
219728	chr8	81036651	81037180	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	75153	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
125387	chr2	11346071	11346700	+	0	NA	promoter-TSS (NM_001321643)	promoter-TSS (NM_001321643)	-948	NM_001321643	9475		NM_004850	ENSG00000134318	ROCK2	ROCK-II	Rho associated coiled-coil containing protein kinase 2	protein-coding
4021	chr1	18937151	18937250	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	19476	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
94742	chr17	30796121	30796580	+	0	NA	intron (NM_015986, intron 3 of 7)	intron (NM_015986, intron 3 of 7)	28342	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
113970	chr19	10809051	10810200	+	0	NA	intron (NM_001005361, intron 14 of 20)	intron (NM_001005361, intron 14 of 20)	7871	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
209253	chr7	75887801	75888600	+	0	NA	exon (NM_001040457, exon 5 of 5)	exon (NM_001040457, exon 5 of 5)	9166	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
213018	chr7	131020051	131022430	+	0	NA	intron (NR_109850, intron 3 of 5)	Tigger10|DNA|TcMar-Tigger	85790	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
43838	chr11	87036101	87036550	+	0	NA	Intergenic	AluSz|SINE|Alu	-1609	NR_033149	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
42358	chr11	68569371	68569600	+	0	NA	intron (NR_147970, intron 9 of 23)	MER44A|DNA|TcMar-Tigger	108733	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
83654	chr16	28316171	28316330	+	0	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	23725	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
156858	chr22	42067971	42069100	+	0	NA	exon (NM_001362848, exon 3 of 10)	exon (NM_001362848, exon 3 of 10)	2277	NM_000262	4668		NM_000262	ENSG00000198951	NAGA	D22S674|GALB	alpha-N-acetylgalactosaminidase	protein-coding
15695	chr1	150983071	150983430	+	0	NA	intron (NM_003568, intron 3 of 13)	intron (NM_003568, intron 3 of 13)	958	NM_003568	8416		NM_003568	ENSG00000143412	ANXA9	ANX31	annexin A9	protein-coding
54925	chr12	96193651	96194880	+	0	NA	promoter-TSS (NM_005230)	promoter-TSS (NM_005230)	-110	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
106492	chr18	14613401	14613600	+	0	NA	Intergenic	Intergenic	-69900	NR_134878	388468		NM_001137671	ENSG00000183206	POTEC	A26B2|CT104.6|POTE-18|POTE18	POTE ankyrin domain family member C	protein-coding
225030	chr9	33147871	33148550	+	0	NA	intron (NM_001378495, intron 1 of 5)	L1ME5|LINE|L1	-18738	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
43131	chr11	75265151	75265450	+	0	NA	3' UTR (NM_004041, exon 16 of 16)	3' UTR (NM_004041, exon 16 of 16)	24526	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
215350	chr7	157378371	157378830	+	0	NA	intron (NM_001363676, intron 5 of 6)	intron (NM_001363676, intron 5 of 6)	41596	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
127697	chr2	43217351	43218090	+	0	NA	Intergenic	Intergenic	8886	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
13066	chr1	111475371	111476100	+	0	NA	intron (NM_174896, intron 1 of 5)	MamRep605|LTR?|LTR?	1751	NM_001300834	128346		NM_174896	ENSG00000143110	C1orf162	-	chromosome 1 open reading frame 162	protein-coding
188471	chr5	154754171	154756200	+	0	NA	promoter-TSS (NM_001367718)	promoter-TSS (NM_001367718)	-192	NM_001367718	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
95320	chr17	35612701	35613200	+	0	NA	intron (NM_001282, intron 5 of 20)	intron (NM_001282, intron 5 of 20)	25628	NM_001030006	163		NM_001282	ENSG00000006125	AP2B1	ADTB2|AP105B|AP2-BETA|CLAPB1	adaptor related protein complex 2 subunit beta 1	protein-coding
21771	chr1	206920301	206920800	+	0	NA	intron (NM_001193338, intron 1 of 6)	L2c|LINE|L2	1391	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
25779	chr10	11153321	11153780	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-11331	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
72473	chr15	32472301	32472500	+	0	NA	Intergenic	Charlie10|DNA|hAT-Charlie	-16766	NM_001277308	728047		NM_001277308	ENSG00000206127	GOLGA8O	-	golgin A8 family member O	protein-coding
29353	chr10	69558521	69558980	+	0	NA	Intergenic	Intergenic	14672	NM_020999	50674		NM_020999	ENSG00000122859	NEUROG3	Atoh5|Math4B|NGN-3|bHLHa7|ngn3	neurogenin 3	protein-coding
35525	chr11	1563901	1564880	+	0	NA	intron (NM_004420, intron 2 of 6)	intron (NM_004420, intron 2 of 6)	7881	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
132379	chr2	105771101	105771330	+	0	NA	intron (NM_001004722, intron 1 of 3)	AluY|SINE|Alu	26152	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
24746	chr1	248747501	248747930	+	0	NA	intron (NM_001291283, intron 4 of 5)	CpG	8044	NM_001085474	646627		NM_001085474	ENSG00000259823	LYPD8	-	LY6/PLAUR domain containing 8	protein-coding
202377	chr6	157819471	157820030	+	0	NA	Intergenic	Intergenic	-3496	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
80490	chr16	2711271	2711600	+	0	NA	TTS (NM_031948)	TTS (NM_031948)	8789	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
126135	chr2	26139101	26139300	+	0	NA	Intergenic	Intergenic	-33888	NM_001168241	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
57081	chr12	121023651	121024130	+	0	NA	intron (NM_001261825, intron 3 of 3)	MIR3|SINE|MIR	-7403	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
195134	chr6	35681501	35682400	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	6965	NM_001145776	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
147278	chr20	57514221	57514480	+	0	NA	intron (NR_072975, intron 6 of 10)	intron (NR_072975, intron 6 of 10)	10517	NM_001269052	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
108641	chr18	76494951	76495650	+	0	NA	promoter-TSS (NM_014643)	promoter-TSS (NM_014643)	-39	NR_164145	400658		NM_207460	ENSG00000275763	ZNF516-DT	C18orf65	ZNF516 divergent transcript	ncRNA
139702	chr2	227481301	227481500	+	0	NA	intron (NM_001135189, intron 1 of 11)	HAL1|LINE|L1	9244	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
122642	chr19	49837351	49838050	+	0	NA	TTS (NR_040037)	TTS (NR_040037)	5682	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
76280	chr15	74127571	74128380	+	0	NA	non-coding (NR_027073, exon 2 of 2)	non-coding (NR_027073, exon 2 of 2)	1303	NR_152622	283731		NR_027073	ENSG00000248540	LOC283731	-	uncharacterized LOC283731	ncRNA
8943	chr1	44217501	44218350	+	0	NA	intron (NM_001034024, intron 4 of 10)	intron (NM_001034024, intron 4 of 10)	4454	NM_019100	55929		NM_019100	ENSG00000178028	DMAP1	DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4	DNA methyltransferase 1 associated protein 1	protein-coding
38132	chr11	35272421	35273000	+	0	NA	intron (NM_004171, intron 9 of 10)	intron (NM_004171, intron 9 of 10)	109760	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
72325	chr15	31263021	31263280	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-32288	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
94308	chr17	28748101	28748300	+	0	NA	intron (NM_004295, intron 4 of 6)	intron (NM_004295, intron 4 of 6)	4189	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
217625	chr8	30050771	30051650	+	0	NA	Intergenic	Intergenic	31854	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
56471	chr12	116121521	116121780	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	27004	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
80465	chr16	2692951	2693450	+	0	NA	intron (NM_018992, intron 1 of 5)	intron (NM_018992, intron 1 of 5)	10677	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
50025	chr12	43633751	43633850	+	0	NA	Intergenic	AluY|SINE|Alu	-81597	NM_025003	80070		NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif 20	protein-coding
179585	chr4	185342071	185342450	+	0	NA	intron (NM_001378032, intron 13 of 19)	intron (NM_001378032, intron 13 of 19)	36738	NM_018409	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
226707	chr9	75123701	75124050	+	0	NA	intron (NM_012383, intron 2 of 9)	intron (NM_012383, intron 2 of 9)	35361	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
202520	chr6	158570171	158570930	+	0	NA	intron (NR_164859, intron 1 of 16)	intron (NR_164859, intron 1 of 16)	10459	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
112021	chr19	5044071	5044300	+	0	NA	intron (NM_001370093, intron 5 of 11)	CpG	75072	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
124788	chr2	7440671	7441230	+	0	NA	intron (NR_038432, intron 4 of 5)	intron (NR_038432, intron 4 of 5)	19689	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
130375	chr2	85299651	85299750	+	0	NA	intron (NM_031283, intron 4 of 11)	AluJb|SINE|Alu	28289	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
2345	chr1	9237401	9237600	+	0	NA	intron (NM_004285, intron 1 of 4)	AluSx1|SINE|Alu	-2347	NM_001282587	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
149158	chr21	17805171	17805600	+	0	NA	intron (NM_017447, intron 2 of 4)	AluSq2|SINE|Alu	-12876	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
238995	chrX	155998671	155999480	+	0	NA	intron (NM_002186, intron 1 of 8)	intron (NM_002186, intron 1 of 8)	1379	NM_002186	3581		NM_002186	ENSG00000124334	IL9R	CD129|IL-9R	interleukin 9 receptor	protein-coding
172293	chr4	1569271	1569730	+	0	NA	Intergenic	Intergenic	114491	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
130840	chr2	87154151	87154630	+	0	NA	Intergenic	MER52-int|LTR|ERV1	-40396	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
12442	chr1	107142071	107142350	+	0	NA	intron (NM_001372170, intron 1 of 7)	intron (NM_001372170, intron 1 of 7)	875	NM_001372170	22854		NM_014917	ENSG00000162631	NTNG1	Lmnt1|NetG1|NetrinG1	netrin G1	protein-coding
66535	chr14	61765301	61765700	+	0	NA	intron (NM_003082, intron 1 of 9)	MER4A1|LTR|ERV1	3080	NM_003082	6617		NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
45269	chr11	118007201	118008650	+	0	NA	Intergenic	AluSz|SINE|Alu	21531	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
41261	chr11	65835351	65835680	+	0	NA	intron (NM_152760, intron 1 of 12)	L2a|LINE|L2	1552	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
91737	chr17	6677321	6677880	+	0	NA	Intergenic	Intergenic	19881	NR_045985	100652883		NR_045985		ALOX15P1	ALOX15P	arachidonate 15-lipoxygenase pseudogene 1	pseudo
145046	chr20	38419021	38419480	+	0	NA	Intergenic	AluSz6|SINE|Alu	6080	NR_002910	26776		NR_002910		SNORA71B	RNU71B|U71b	small nucleolar RNA, H/ACA box 71B	snoRNA
82853	chr16	21517401	21518240	+	0	NA	TTS (NR_002594)	TTS (NR_002594)	2624	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
83333	chr16	24921201	24921650	+	0	NA	intron (NM_018054, intron 18 of 18)	intron (NM_018054, intron 18 of 18)	75194	NM_052944								
225217	chr9	34177101	34177300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1805	NM_001171201	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
195616	chr6	37698801	37700400	+	0	NA	Intergenic	Intergenic	-1717	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
132073	chr2	101271171	101271530	+	0	NA	Intergenic	Intergenic	1699	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
180028	chr5	1050221	1050480	+	0	NA	TTS (NM_006598).2	TTS (NM_006598).2	12624	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
239354	chrY	19550021	19550280	+	0	NA	Intergenic	Intergenic	-17208	NR_045128	246126		NM_001005852	ENSG00000291033	TXLNGY	CYorf15A|CYorf15B|TXLNG2P	taxilin gamma Y-linked (pseudogene)	pseudo
174597	chr4	40258221	40259330	+	0	NA	Intergenic	Intergenic	-48410	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
190508	chr5	180492321	180493030	+	0	NA	Intergenic	L1MEh|LINE|L1	-1704	NM_001370472	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
28759	chr10	62025501	62025730	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-23742	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
161434	chr3	42012321	42013100	+	0	NA	Intergenic	L1MC4|LINE|L1	-50607	NR_136342	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
118777	chr19	38389471	38389630	+	0	NA	promoter-TSS (NR_073032)	promoter-TSS (NR_073032)	-650	NM_001042522	399473		NM_001039616	ENSG00000188766	SPRED3	Eve-3|spred-3	sprouty related EVH1 domain containing 3	protein-coding
204340	chr7	2843471	2844880	+	0	NA	5' UTR (NM_001293092, exon 1 of 3)	5' UTR (NM_001293092, exon 1 of 3)	133	NM_007353	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
176109	chr4	83033501	83033700	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-1583	NM_001330727	51138		NM_016129	ENSG00000138663	COPS4	CSN4|SGN4	COP9 signalosome subunit 4	protein-coding
204875	chr7	5898351	5899850	+	0	NA	intron (NM_015622, intron 1 of 14)	CpG	367	NM_015622	51622		NM_015622	ENSG00000122674	CCZ1	C7orf28A|CCZ1A|CGI-43|H_DJ1163J12.2	CCZ1 homolog, vacuolar protein trafficking and biogenesis associated	protein-coding
100158	chr17	58610151	58610250	+	0	NA	intron (NM_198393, intron 10 of 32)	intron (NM_198393, intron 10 of 32)	-65872	NM_001368771	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
174411	chr4	39367921	39368180	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-1688	NM_001204747	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
41592	chr11	66351151	66351250	+	0	NA	intron (NR_135761, intron 1 of 1)	L1MB4|LINE|L1	3209	NR_135761	102724064		NR_135761	ENSG00000255468	B4GAT1-DT	-	B4GAT1 divergent transcript	ncRNA
61141	chr13	48652101	48652300	+	0	NA	Intergenic	Intergenic	-1729	NM_001308465	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
65149	chr14	45135521	45136750	+	0	NA	exon (NM_001308134, exon 1 of 11)	exon (NM_001308134, exon 1 of 11)	196	NM_001308134	57697		NM_020937	ENSG00000187790	FANCM	FAAP250|KIAA1596|POF15|SPGF28	FA complementation group M	protein-coding
155225	chr22	37905851	37908330	+	0	NA	intron (NM_033386, intron 1 of 15)	L2b|LINE|L2	793	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
42196	chr11	67996651	67997400	+	0	NA	intron (NM_030930, intron 7 of 10)	intron (NM_030930, intron 7 of 10)	7072	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
64176	chr14	22940901	22941130	+	0	NA	intron (NR_110002, intron 2 of 2)	intron (NR_110002, intron 2 of 2)	11406	NR_110002	101926933		NR_110002	ENSG00000257285	PRMT5-DT	-	PRMT5 divergent transcript	ncRNA
192926	chr6	27700451	27700550	+	0	NA	intron (NR_038294, intron 1 of 3)	AluJr4|SINE|Alu	6421	NR_038292	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
207173	chr7	43607271	43608200	+	0	NA	TTS (NR_146945)	TTS (NR_146945)	24627	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
234574	chrX	19753501	19754100	+	0	NA	intron (NM_001353892, intron 2 of 17)	L1ME3Cz|LINE|L1	45973	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
181355	chr5	40485501	40485700	+	0	NA	Intergenic	MIR3|SINE|MIR	-194315	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
144854	chr20	36893871	36894280	+	0	NA	3' UTR (NM_001304783, exon 6 of 6)	3' UTR (NM_001304783, exon 6 of 6)	17937	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
54717	chr12	93502971	93503380	+	0	NA	non-coding (NR_038159, exon 7 of 7)	non-coding (NR_038159, exon 7 of 7)	35661	NR_038160	28977		NM_014050	ENSG00000198015	MRPL42	HSPC204|L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT|mL42	mitochondrial ribosomal protein L42	protein-coding
142132	chr20	2738101	2738530	+	0	NA	intron (NR_138537, intron 7 of 17)	intron (NR_138537, intron 7 of 17)	45437	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
79049	chr16	86451	87050	+	0	NA	TTS (NM_001015052)	TTS (NM_001015052)	8525	NM_001015052	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
61848	chr13	76903601	76903880	+	0	NA	Intergenic	Intergenic	-17335	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
111679	chr19	4262971	4263300	+	0	NA	intron (NM_018074, intron 6 of 7)	intron (NM_018074, intron 6 of 7)	-15934	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
74187	chr15	55641801	55642000	+	0	NA	intron (NM_173814, intron 11 of 19)	AluYb8|SINE|Alu	-52929	NM_015617	26108		NM_015617	ENSG00000171016	PYGO1	-	pygopus family PHD finger 1	protein-coding
81564	chr16	9129301	9129500	+	0	NA	Intergenic	AluSx1|SINE|Alu	37756	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
196015	chr6	42018201	42018400	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluY|SINE|Alu	30594	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
216232	chr8	12190621	12190880	+	0	NA	intron (NR_003494, intron 2 of 5)	AluSx|SINE|Alu	3379	NR_003494	85002		NM_001083537	ENSG00000186523	FAM86B1	-	family with sequence similarity 86 member B1	protein-coding
125014	chr2	9555121	9556700	+	0	NA	promoter-TSS (NM_003183)	promoter-TSS (NM_003183)	-80	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
19747	chr1	181317951	181319000	+	0	NA	Intergenic	CpG	82087	NR_046249	100287948		NR_046249	ENSG00000179452	LINC01699	GM140	long intergenic non-protein coding RNA 1699	ncRNA
29634	chr10	71821251	71821550	+	0	NA	intron (NM_002778, intron 8 of 13)	intron (NM_002778, intron 8 of 13)	9517	NM_001171935	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
99921	chr17	56980071	56980230	+	0	NA	intron (NM_021626, intron 1 of 12)	AluJo|SINE|Alu	2019	NM_021626	59342		NM_021626	ENSG00000121064	SCPEP1	HSCP1|RISC	serine carboxypeptidase 1	protein-coding
146645	chr20	50349371	50349530	+	0	NA	Intergenic	Intergenic	-28108	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
177322	chr4	109706471	109706830	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3205	NM_001226	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
138145	chr2	202313801	202314200	+	0	NA	Intergenic	AluJb|SINE|Alu	20949	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
67067	chr14	67874471	67874630	+	0	NA	intron (NM_133509, intron 5 of 10)	intron (NM_133509, intron 5 of 10)	50958	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
50360	chr12	47204301	47204500	+	0	NA	intron (NM_001281429, intron 2 of 2)	L1P3|LINE|L1	12043	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
236828	chrX	79184451	79184700	+	0	NA	Intergenic	AluSx1|SINE|Alu	39887	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
77263	chr15	81331051	81331350	+	0	NA	3' UTR (NM_001080532, exon 22 of 22)	3' UTR (NM_001080532, exon 22 of 22)	6867	NR_120365	101929655		NR_120365		TMC3-AS1	-	TMC3 antisense RNA 1	ncRNA
23692	chr1	231531171	231531330	+	0	NA	intron (NR_028398, intron 2 of 10)	AluSz|SINE|Alu	2581	NM_005999	7257		NM_005999	ENSG00000116918	TSNAX	C3PO|TRAX	translin associated factor X	protein-coding
31198	chr10	91223451	91223750	+	0	NA	intron (NM_032373, intron 2 of 9)	intron (NM_032373, intron 2 of 9)	2937	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
134526	chr2	143581101	143581380	+	0	NA	intron (NM_018460, intron 11 of 13)	intron (NM_018460, intron 11 of 13)	-355827	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
76466	chr15	74855771	74856380	+	0	NA	intron (NM_001320778, intron 1 of 9)	intron (NM_001320778, intron 1 of 9)	-12919	NM_001284364	25989		NM_001099436	ENSG00000140474	ULK3	-	unc-51 like kinase 3	protein-coding
195962	chr6	41949851	41950150	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluYm1|SINE|Alu	-8152	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
174742	chr4	44677801	44679400	+	0	NA	5' UTR (NM_021927, exon 1 of 17)	5' UTR (NM_021927, exon 1 of 17)	180	NM_021927	60558		NM_021927	ENSG00000151806	GUF1	DEE40|EF-4|EF4|EIEE40	GTP binding elongation factor GUF1	protein-coding
153619	chr22	28561621	28561700	+	0	NA	intron (NM_001145418, intron 2 of 22)	L2c|LINE|L2	101791	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
74389	chr15	58909671	58909830	+	0	NA	intron (NR_135043, intron 4 of 18)	L1MC5|LINE|L1	23929	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
37540	chr11	18677651	18677750	+	0	NA	Intergenic	MIRb|SINE|MIR	-21079	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
220893	chr8	104787871	104788250	+	0	NA	Intergenic	Intergenic	-199036	NM_013437	29967		NM_013437	ENSG00000147650	LRP12	ALS28|MIG13A|ST7	LDL receptor related protein 12	protein-coding
113699	chr19	10417821	10418280	+	0	NA	intron (NM_001243121, intron 3 of 16)	intron (NM_001243121, intron 3 of 16)	1277	NM_001243121	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
72095	chr15	28920651	28921850	+	0	NA	promoter-TSS (NM_005503)	promoter-TSS (NM_005503)	-387	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
22368	chr1	217630571	217631680	+	0	NA	promoter-TSS (NM_138796)	promoter-TSS (NM_138796)	-35	NM_018040	55105		NM_018040	ENSG00000092978	GPATCH2	CT110|GPATC2|PPP1R30|Pfa1	G-patch domain containing 2	protein-coding
46904	chr11	134196671	134197050	+	0	NA	intron (NM_001372068, intron 13 of 34)	L1MB7|LINE|L1	27107	NM_001372065	23310		NM_015261	ENSG00000151503	NCAPD3	CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6	non-SMC condensin II complex subunit D3	protein-coding
156677	chr22	41659271	41659430	+	0	NA	intron (NM_001288976, intron 11 of 12)	AluYi6_4d|SINE|Alu	29517	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
78172	chr15	90522121	90522730	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-7498	NM_001042574	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
50395	chr12	47297851	47298350	+	0	NA	Intergenic	L1MEf|LINE|L1	9299	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
229085	chr9	114365251	114365350	+	0	NA	intron (NM_001317952, intron 5 of 20)	intron (NM_001317952, intron 5 of 20)	22682	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
35899	chr11	2410321	2411380	+	0	NA	intron (NM_014555, intron 18 of 23)	intron (NM_014555, intron 18 of 23)	10100	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
31891	chr10	100284451	100284750	+	0	NA	intron (NM_001282436, intron 2 of 5)	AluSx|SINE|Alu	1764	NM_001001342	282991		NM_173809	ENSG00000196072	BLOC1S2	BLOS2|BORCS2|CEAP|CEAP11	biogenesis of lysosomal organelles complex 1 subunit 2	protein-coding
31405	chr10	95441121	95441380	+	0	NA	promoter-TSS (NM_001034955)	promoter-TSS (NM_001034955)	-70	NM_001034955	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
170419	chr3	185587601	185587830	+	0	NA	intron (NM_021627, intron 1 of 16)	AluY|SINE|Alu	1420	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
72060	chr15	28848371	28848730	+	0	NA	5' UTR (NM_001365371, exon 1 of 9)	5' UTR (NM_001365371, exon 1 of 9)	135	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
145373	chr20	41171721	41172300	+	0	NA	intron (NM_182811, intron 24 of 31)	intron (NM_182811, intron 24 of 31)	2987	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
66114	chr14	60064571	60065250	+	0	NA	TTS (NM_001355272)	TTS (NM_001355272)	-27001	NM_022495	64430		NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex 4	protein-coding
840	chr1	1595971	1596430	+	0	NA	Intergenic	Intergenic	-3233	NR_147951	105378586		NR_147951		LOC105378586	-	uncharacterized LOC105378586	ncRNA
160842	chr3	33074171	33074800	+	0	NA	intron (NM_000404, intron 1 of 15)	MER112|DNA|hAT-Charlie	22347	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
32433	chr10	102504701	102506200	+	0	NA	intron (NM_001178133, intron 1 of 10)	intron (NM_001178133, intron 1 of 10)	1478	NM_001178133	51684		NM_016169	ENSG00000107882	SUFU	BCNS2|JBTS32|PRO1280|SUFUH|SUFUXL	SUFU negative regulator of hedgehog signaling	protein-coding
65347	chr14	50323251	50323550	+	0	NA	TTS (NM_015684)	TTS (NM_015684)	11076	NM_015684	27109		NM_015684	ENSG00000125375	DMAC2L	ATP5S|ATPW|FB|HSU79253	distal membrane arm assembly component 2 like	protein-coding
132346	chr2	105733071	105733800	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-11477	NM_003581	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
2929	chr1	11739551	11739950	+	0	NA	intron (NM_001040195, intron 1 of 3)	intron (NM_001040195, intron 1 of 3)	3614	NM_020350	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
49363	chr12	22331951	22332300	+	0	NA	intron (NM_001304450, intron 1 of 3)	intron (NM_001304450, intron 1 of 3)	2589	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
199731	chr6	125756501	125756900	+	0	NA	intron (NM_012259, intron 4 of 4)	MIR|SINE|MIR	7068	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
93696	chr17	19381921	19382330	+	0	NA	exon (NM_139033, exon 5 of 7)	exon (NM_139033, exon 5 of 7)	3627	NM_139034	5598		NM_002749	ENSG00000166484	MAPK7	BMK1|ERK4|ERK5|PRKM7	mitogen-activated protein kinase 7	protein-coding
52238	chr12	54401151	54401750	+	0	NA	exon (NM_002205, exon 24 of 30)	exon (NM_002205, exon 24 of 30)	-10152	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
181967	chr5	55103751	55104450	+	0	NA	intron (NM_006144, intron 1 of 4)	intron (NM_006144, intron 1 of 4)	1454	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
95065	chr17	32783521	32784030	+	0	NA	intron (NM_015194, intron 1 of 21)	intron (NM_015194, intron 1 of 21)	93349	NM_015194	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
207720	chr7	47945201	47945600	+	0	NA	intron (NM_138295, intron 1 of 56)	intron (NM_138295, intron 1 of 56)	3066	NM_138295	168507		NM_138295	ENSG00000158683	PKD1L1	HTX8|PRO19563	polycystin 1 like 1, transient receptor potential channel interacting	protein-coding
62824	chr13	109766271	109766430	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	20233	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
20230	chr1	193182951	193183830	+	0	NA	intron (NM_003783, intron 1 of 1)	intron (NM_003783, intron 1 of 1)	3223	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
110270	chr19	1810951	1811050	+	0	NA	intron (NR_047593, intron 2 of 28)	intron (NR_047593, intron 2 of 28)	1276	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
106985	chr18	32027871	32028680	+	0	NA	intron (NM_017831, intron 1 of 5)	AluY|SINE|Alu	9450	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
551	chr1	1244371	1244930	+	0	NA	intron (NM_001014980, intron 1 of 7)	intron (NM_001014980, intron 1 of 7)	2072	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
116802	chr19	18531071	18531430	+	0	NA	TTS (NM_001308373)	TTS (NM_001308373)	-9180	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
22677	chr1	223830801	223831100	+	0	NA	intron (NM_001031685, intron 1 of 17)	AluY|SINE|Alu	14997	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
52989	chr12	57495151	57495830	+	0	NA	intron (NM_004990, intron 7 of 20)	SVA_B|Retroposon|SVA	-6666	NM_001319850	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
43720	chr11	86047071	86048030	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	21534	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
153787	chr22	29592471	29592830	+	0	NA	Intergenic	AluYe5|SINE|Alu	-10906	NM_016418	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
97345	chr17	43283621	43284800	+	0	NA	TTS (NR_002716).8	TTS (NR_002716).8	119	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
95090	chr17	34199801	34200200	+	0	NA	Intergenic	Intergenic	-16368	NR_110748	101927239		NR_110748	ENSG00000261156	LINC01989	-	long intergenic non-protein coding RNA 1989	ncRNA
28279	chr10	46022371	46022530	+	0	NA	intron (NM_001145263, intron 1 of 9)	intron (NM_001145263, intron 1 of 9)	1008	NM_005437	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
183806	chr5	82388851	82389150	+	0	NA	Intergenic	Intergenic	109538	NM_001017971	92270		NM_001017971		ATP6AP1L	-	ATPase H+ transporting accessory protein 1 like (pseudogene)	pseudo
809	chr1	1556371	1556950	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	-16036	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
185145	chr5	119317001	119317200	+	0	NA	intron (NM_001286815, intron 2 of 2)	intron (NM_001286815, intron 2 of 2)	-16075	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
175530	chr4	74449551	74450150	+	0	NA	intron (NM_001657, intron 3 of 5)	MER58C|DNA|hAT-Charlie	4714	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
222118	chr8	131913001	131913200	+	0	NA	intron (NM_001323555, intron 1 of 22)	intron (NM_001323555, intron 1 of 22)	-3673	NM_001323556	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
183587	chr5	80184851	80185550	+	0	NA	intron (NM_001174072, intron 2 of 11)	intron (NM_001174072, intron 2 of 11)	70848	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
110543	chr19	2094121	2095000	+	0	NA	intron (NM_130807, intron 1 of 4)	intron (NM_130807, intron 1 of 4)	1766	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
159324	chr3	13038971	13039330	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	34279	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
55004	chr12	96365721	96366550	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	34304	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
4346	chr1	20639801	20640650	+	0	NA	intron (NM_032409, intron 3 of 7)	intron (NM_032409, intron 3 of 7)	6546	NR_106732	102464833		NR_106732	ENSG00000284005	MIR6084	hsa-mir-6084	microRNA 6084	ncRNA
124294	chr19	57855121	57855700	+	0	NA	intron (NM_001204817, intron 1 of 2)	intron (NM_001204817, intron 1 of 2)	5551	NM_001204817	84914		NM_017961	ENSG00000198466	ZNF587	ZF6	zinc finger protein 587	protein-coding
228872	chr9	112377871	112378030	+	0	NA	Intergenic	L2|LINE|L2	-1959	NR_036651	84263		NM_032303	ENSG00000119471	HSDL2	C9orf99|SDR13C1	hydroxysteroid dehydrogenase like 2	protein-coding
48538	chr12	10215271	10215630	+	0	NA	intron (NM_031412, intron 1 of 3)	MIR|SINE|MIR	2573	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
211140	chr7	102543521	102543980	+	0	NA	5' UTR (NM_001363506, exon 2 of 7)	5' UTR (NM_001363506, exon 2 of 7)	1038	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
202871	chr6	159929671	159930450	+	0	NA	Intergenic	Intergenic	-39022	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
25259	chr10	6072301	6073150	+	0	NA	Intergenic	Intergenic	-10358	NM_001308243	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
21251	chr1	204377751	204378850	+	0	NA	Intergenic	CpG	-8581	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
143352	chr20	25862801	25863800	+	0	NA	Intergenic	SST1|Satellite|centr	-9279	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
5787	chr1	26538771	26539200	+	0	NA	intron (NM_002953, intron 2 of 21)	intron (NM_002953, intron 2 of 21)	-4127	NM_001330441	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
111646	chr19	4186101	4186640	+	0	NA	5' UTR (NM_133475, exon 2 of 22)	5' UTR (NM_133475, exon 2 of 22)	3016	NM_133475	170961		NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
142964	chr20	19828271	19828630	+	0	NA	intron (NM_001378238, intron 2 of 11)	L3b|LINE|CR1	-58071	NM_001242581	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
30504	chr10	79319471	79319630	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-27919	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
162318	chr3	47440101	47440300	+	0	NA	intron (NM_001320044, intron 2 of 19)	intron (NM_001320044, intron 2 of 19)	35741	NM_012235	22937		NM_012235	ENSG00000114650	SCAP	-	SREBF chaperone	protein-coding
121463	chr19	47056651	47056950	+	0	NA	Intergenic	AluJo|SINE|Alu	-8176	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
48769	chr12	11555571	11556330	+	0	NA	non-coding (NR_033890, exon 6 of 8)	non-coding (NR_033890, exon 6 of 8)	7920	NR_033890	338817		NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
114025	chr19	10921271	10921430	+	0	NA	TTS (NM_001321440)	TTS (NM_001321440)	7289	NM_024029	78992		NM_024029	ENSG00000130733	YIPF2	FinGER2|YIPFbeta3B|Yip5C	Yip1 domain family member 2	protein-coding
11870	chr1	93081451	93082200	+	0	NA	intron (NM_001164393, intron 1 of 12)	MER3|DNA|hAT-Charlie	2542	NM_007358	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
26645	chr10	22564171	22564730	+	0	NA	intron (NM_001330062, intron 6 of 9)	intron (NM_001330062, intron 6 of 9)	-126521	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
115423	chr19	15303951	15305380	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-24214	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
17311	chr1	156455921	156456900	+	0	NA	Intergenic	Intergenic	-26862	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
92631	chr17	10117421	10118080	+	0	NA	intron (NM_201433, intron 1 of 13)	L2a|LINE|L2	80856	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
135471	chr2	161341001	161341350	+	0	NA	intron (NM_005805, intron 3 of 11)	CpG	32750	NM_005805	10213		NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	proteasome 26S subunit, non-ATPase 14	protein-coding
22924	chr1	225927151	225927730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3100	NM_001271681	29920		NM_013328	ENSG00000143811	PYCR2	HLD10|P5CR2	pyrroline-5-carboxylate reductase 2	protein-coding
89868	chr16	89637601	89637800	+	0	NA	exon (NM_001128141, exon 9 of 11)	exon (NM_001128141, exon 9 of 11)	17103	NM_004413	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
172688	chr4	2755171	2756870	+	0	NA	exon (NM_024309, exon 1 of 6)	exon (NM_024309, exon 1 of 6)	316	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
158980	chr3	10262521	10263080	+	0	NA	intron (NM_014760, intron 3 of 7)	AluSx|SINE|Alu	14341	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
75152	chr15	64622301	64623480	+	0	NA	exon (NM_015042, exon 3 of 10)	exon (NM_015042, exon 3 of 10)	80391	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
69544	chr14	96507821	96508530	+	0	NA	intron (NM_001293628, intron 1 of 21)	intron (NM_001293628, intron 1 of 21)	5310	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
199609	chr6	119329771	119330130	+	0	NA	intron (NM_005907, intron 2 of 12)	L2b|LINE|L2	19811	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
231412	chr9	131059301	131059700	+	0	NA	intron (NM_006059, intron 12 of 27)	AluSc8|SINE|Alu	-36976	NR_033701	83543		NM_031426	ENSG00000126878	AIF1L	C9orf58|IBA2	allograft inflammatory factor 1 like	protein-coding
125881	chr2	24622251	24622750	+	0	NA	intron (NM_147233, intron 1 of 20)	L1MC5a|LINE|L1	38023	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
31356	chr10	93481101	93481300	+	0	NA	intron (NM_133337, intron 1 of 52)	intron (NM_133337, intron 1 of 52)	1134	NM_133337	26509		NM_013451	ENSG00000138119	MYOF	FER1L3|HAE7	myoferlin	protein-coding
68000	chr14	74973251	74973850	+	0	NA	Intergenic	Intergenic	-17786	NM_001207012	5228		NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
141911	chr20	973601	974230	+	0	NA	intron (NM_001029871, intron 1 of 4)	intron (NM_001029871, intron 1 of 4)	28396	NM_001029871	343637		NM_001029871	ENSG00000101282	RSPO4	C20orf182|CRISTIN4	R-spondin 4	protein-coding
123121	chr19	51703741	51705000	+	0	NA	exon (NM_001316972, exon 8 of 9)	exon (NM_001316972, exon 8 of 9)	-10914	NR_108100	102238594		NR_108100	ENSG00000269959	SPACA6-AS1	LINC01129|SPACA6P-AS	SPACA6 antisense RNA 1	ncRNA
151910	chr22	18968251	18969150	+	0	NA	Intergenic	Intergenic	-1798	NR_045121	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
111990	chr19	4914651	4915570	+	0	NA	intron (NM_013282, intron 1 of 15)	intron (NM_013282, intron 1 of 15)	4743	NM_013282	29128		NM_013282	ENSG00000276043	UHRF1	ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95	ubiquitin like with PHD and ring finger domains 1	protein-coding
84104	chr16	29639801	29640030	+	0	NA	Intergenic	AluSc5|SINE|Alu	-23035	NM_001030288	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
69052	chr14	91871821	91872880	+	0	NA	intron (NM_001384159, intron 10 of 10)	intron (NM_001384159, intron 10 of 10)	-4814	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
197407	chr6	73517971	73518130	+	0	NA	TTS (NR_132980).2	TTS (NR_132980).2	388	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
172415	chr4	1809851	1810850	+	0	NA	Intergenic	Intergenic	17038	NM_001163213	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
166503	chr3	114318351	114318950	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-2081	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
83215	chr16	23699121	23699400	+	0	NA	intron (NM_001308220, intron 12 of 20)	intron (NM_001308220, intron 12 of 20)	13962	NM_033266	10595		NM_033266	ENSG00000134398	ERN2	IRE1-BETA|IRE1b|IRE2p|hIRE2p	endoplasmic reticulum to nucleus signaling 2	protein-coding
145079	chr20	38649271	38650000	+	0	NA	intron (NM_001164431, intron 14 of 14)	LTR16A1|LTR|ERVL	47826	NM_001164431	343578		NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
169700	chr3	172091851	172092150	+	0	NA	intron (NM_001135095, intron 1 of 25)	MamSINE1|SINE|tRNA-RTE	51469	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
18143	chr1	160750371	160750900	+	0	NA	intron (NM_001282596, intron 3 of 4)	intron (NM_001282596, intron 3 of 4)	11388	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
63623	chr14	20653021	20653680	+	0	NA	Intergenic	Intergenic	-11659	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
235255	chrX	41692471	41693030	+	0	NA	intron (NM_005300, intron 2 of 2)	L3|LINE|CR1	3777	NM_001097579	2857		NM_005300	ENSG00000171659	GPR34	LPS1|LYPSR1	G protein-coupled receptor 34	protein-coding
89161	chr16	88533881	88536300	+	0	NA	3' UTR (NM_153813, exon 10 of 10)	3' UTR (NM_153813, exon 10 of 10)	-4037	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
224097	chr9	4530451	4531350	+	0	NA	intron (NM_004170, intron 1 of 11)	intron (NM_004170, intron 1 of 11)	40432	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
199959	chr6	127937971	127938300	+	0	NA	Intergenic	Intergenic	-19504	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
148981	chr21	14026951	14028230	+	0	NA	Intergenic	Intergenic	-47146	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
3985	chr1	18908171	18908750	+	0	NA	3' UTR (NM_001136265, exon 9 of 9)	3' UTR (NM_001136265, exon 9 of 9)	-5661	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
238482	chrX	153472551	153472850	+	0	NA	intron (NR_169631, intron 1 of 10)	L3|LINE|CR1	-2069	NM_017518	55559		NM_017518	ENSG00000213397	HAUS7	UCHL5IP|UIP1	HAUS augmin like complex subunit 7	protein-coding
184816	chr5	111252021	111252300	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	27776	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
192544	chr6	25223551	25224150	+	0	NA	Intergenic	Intergenic	37557	NR_110863	101928663		NR_110862		LOC101928663	-	uncharacterized LOC101928663	ncRNA
157535	chr22	45420771	45421200	+	0	NA	intron (NM_015653, intron 3 of 6)	AluSx|SINE|Alu	7292	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
141209	chr2	239375851	239376580	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	-24411	NR_039948	100616360		NR_039948	ENSG00000264292	MIR2467	mir-2467	microRNA 2467	ncRNA
193795	chr6	31424271	31424630	+	0	NA	Intergenic	L1PB2|LINE|L1	-17217	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
233843	chrX	1505001	1505600	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	31885	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
187869	chr5	148383421	148384580	+	0	NA	promoter-TSS (NM_001271723)	promoter-TSS (NM_001271723)	42	NM_030793	81545		NM_030793	ENSG00000145868	FBXO38	Fbx38|HMN2D|HMND6|MOKA|SP329	F-box protein 38	protein-coding
131480	chr2	96501451	96502500	+	0	NA	intron (NR_104346, intron 1 of 3)	intron (NR_104346, intron 1 of 3)	3382	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
184531	chr5	102288551	102288850	+	0	NA	intron (NM_180991, intron 2 of 12)	L2a|LINE|L2	7584	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
218992	chr8	63145671	63145850	+	0	NA	Intergenic	HERVH48-int|LTR|ERV1	22682	NR_102684	101410533		NR_102684	ENSG00000270673	YTHDF3-DT	YTHDF3-AS1	YTHDF3 divergent transcript	ncRNA
214464	chr7	150357371	150358100	+	0	NA	Intergenic	Intergenic	-10361	NM_001362746	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
49803	chr12	31966621	31967200	+	0	NA	intron (NM_018169, intron 2 of 5)	LTR75B|LTR|ERVL	7495	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
110372	chr19	1912101	1912500	+	0	NA	exon (NM_001329533, exon 2 of 2)	exon (NM_001329533, exon 2 of 2)	6901	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
1273	chr1	2316771	2317330	+	0	NA	Intergenic	Intergenic	35611	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
138410	chr2	205002371	205002580	+	0	NA	intron (NM_205863, intron 3 of 21)	intron (NM_205863, intron 3 of 21)	457000	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
26543	chr10	21533621	21535830	+	0	NA	exon (NM_004641, exon 2 of 24)	exon (NM_004641, exon 2 of 24)	493	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
211293	chr7	103245051	103245150	+	0	NA	intron (NR_027768, intron 6 of 22)	L1PA5|LINE|L1	35212	NR_003561	349152		NM_182634	ENSG00000291139	DPY19L2P2	-	DPY19L2 pseudogene 2	pseudo
216766	chr8	22489901	22490300	+	0	NA	intron (NM_005605, intron 3 of 13)	AluSc8|SINE|Alu	49022	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
91501	chr17	4936801	4937100	+	0	NA	TTS (NM_001165418)	TTS (NM_001165418)	3096	NM_003562	8402		NM_003562	ENSG00000108528	SLC25A11	OGC|PGL6|PPGL6|SLC20A4	solute carrier family 25 member 11	protein-coding
95509	chr17	36485951	36487150	+	0	NA	promoter-TSS (NM_001281434)	promoter-TSS (NM_001281434)	-77	NR_104009	9326		NM_004773	ENSG00000273611	ZNHIT3	Hit1|PEHO|TRIP3	zinc finger HIT-type containing 3	protein-coding
194324	chr6	32842071	32842300	+	0	NA	exon (NM_004159, exon 4 of 6).7	exon (NM_004159, exon 4 of 6).7	1862	NM_148919	5696		NM_004159	ENSG00000204264	PSMB8	ALDD|D6S216|D6S216E|JMP|LMP7|NKJO|PRAAS1|PSMB5i|RING10	proteasome 20S subunit beta 8	protein-coding
202694	chr6	158807171	158807530	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-10629	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
84921	chr16	31229101	31229930	+	0	NA	3' UTR (NM_001008274, exon 7 of 7)	3' UTR (NM_001008274, exon 7 of 7)	-12380	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
27036	chr10	26890901	26891130	+	0	NA	Intergenic	Intergenic	-29928	NM_001178124	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
169057	chr3	153241251	153241550	+	0	NA	Intergenic	L1PA2|LINE|L1	79174	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
22808	chr1	224621301	224621580	+	0	NA	intron (NM_152495, intron 1 of 5)	intron (NM_152495, intron 1 of 5)	5123	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
154959	chr22	37264351	37265030	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-17818	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
158019	chr22	49911821	49912280	+	0	NA	intron (NM_024105, intron 3 of 9)	intron (NM_024105, intron 3 of 9)	6388	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
118099	chr19	34406321	34406580	+	0	NA	intron (NM_001353433, intron 3 of 6)	AluYm1|SINE|Alu	2051	NM_032346	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
127374	chr2	39403351	39403650	+	0	NA	intron (NM_003618, intron 1 of 33)	L1M1|LINE|L1	33785	NM_003618	8491		NM_003618	ENSG00000011566	MAP4K3	GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding
226444	chr9	71692121	71692980	+	0	NA	intron (NM_001135820, intron 20 of 22)	intron (NM_001135820, intron 20 of 22)	75963	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
168741	chr3	151086321	151087200	+	0	NA	promoter-TSS (NM_053002)	promoter-TSS (NM_053002)	-38	NM_053002	116931		NM_053002	ENSG00000144893	MED12L	NIZIDS|NOPAR|TNRC11L|TRALP|TRALPUSH	mediator complex subunit 12L	protein-coding
78968	chr15	101489171	101490050	+	0	NA	promoter-TSS (NM_002570)	promoter-TSS (NM_002570)	97	NM_138322	5046		NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
50800	chr12	49061971	49062350	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-1366	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
87085	chr16	68453071	68453450	+	0	NA	Intergenic	L2|LINE|L2	-4752	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
54279	chr12	89225101	89225850	+	0	NA	Intergenic	Intergenic	127026	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
55246	chr12	101917601	101918330	+	0	NA	intron (NM_018370, intron 5 of 6)	intron (NM_018370, intron 5 of 6)	40385	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
121870	chr19	48314171	48314730	+	0	NA	intron (NM_144577, intron 3 of 13)	MER119|DNA|hAT-Charlie	5049	NM_144577	93233		NM_144577	ENSG00000105479	ODAD1	CCDC114|CILD20	outer dynein arm docking complex subunit 1	protein-coding
118142	chr19	34998651	34998750	+	0	NA	intron (NM_001320036, intron 2 of 19)	L2b|LINE|L2	-1623	NM_001320035	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
154609	chr22	36300351	36300750	+	0	NA	intron (NM_002473, intron 22 of 40)	intron (NM_002473, intron 22 of 40)	-13643	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
202793	chr6	159107501	159109130	+	0	NA	Intergenic	Intergenic	-61085	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
86323	chr16	66150521	66150780	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-216041	NM_001795	1003		NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
121345	chr19	46791121	46791380	+	0	NA	Intergenic	AluSz|SINE|Alu	-2656	NM_005628	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
151089	chr21	44835901	44836930	+	0	NA	Intergenic	(CCCCA)n|Simple_repeat|Simple_repeat	-18286	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
63525	chr13	114334101	114334700	+	0	NA	promoter-TSS (NR_126391)	promoter-TSS (NR_126391)	-452	NR_126391	104355150		NR_126391		LINC01054	-	long intergenic non-protein coding RNA 1054	ncRNA
30436	chr10	79062001	79062450	+	0	NA	intron (NR_024431, intron 3 of 9)	AluY|SINE|Alu	5223	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
236235	chrX	65723741	65724580	+	0	NA	intron (NM_002444, intron 2 of 12)	AluSq2|SINE|Alu	56506	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
22101	chr1	211623601	211623800	+	0	NA	Intergenic	Intergenic	-16108	NR_131925	105748977		NR_131925	ENSG00000227764	NTRAS	LINC01693	non-coding transcript regulating alternative splicing	ncRNA
97032	chr17	42312051	42313030	+	0	NA	TTS (NM_001384992)	TTS (NM_001384992)	24484	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
80021	chr16	1932671	1932830	+	0	NA	Intergenic	MIR|SINE|MIR	10449	NM_016332	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
50461	chr12	47747671	47747830	+	0	NA	exon (NM_001098531, exon 14 of 28)	exon (NM_001098531, exon 14 of 28)	10648	NM_001098532	10411		NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
86475	chr16	66961951	66962250	+	0	NA	intron (NM_001185177, intron 1 of 12)	MER74A|LTR|ERVL	834	NM_024922	23491		NM_012122	ENSG00000172828	CES3	ES31	carboxylesterase 3	protein-coding
224746	chr9	21805621	21806550	+	0	NA	intron (NM_002451, intron 1 of 7)	L2a|LINE|L2	3449	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
160275	chr3	25789771	25791330	+	0	NA	promoter-TSS (NM_001145294)	promoter-TSS (NM_001145294)	460	NM_017897	54995		NM_017897	ENSG00000151093	OXSM	CEM1|FASN2D|KASI|KS	3-oxoacyl-ACP synthase, mitochondrial	protein-coding
68599	chr14	89586301	89587100	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	10484	NR_024620	29018		NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
117958	chr19	33261871	33262050	+	0	NA	Intergenic	Intergenic	-36110	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
140422	chr2	233110751	233111050	+	0	NA	intron (NM_001017915, intron 2 of 26).2	AluSx|SINE|Alu	50558	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
11785	chr1	92488151	92489150	+	0	NA	Intergenic	Intergenic	-1725	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
179904	chr5	681221	681800	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	11842	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
42118	chr11	67610371	67610730	+	0	NA	exon (NM_007103, exon 5 of 10)	exon (NM_007103, exon 5 of 10)	3614	NM_001166102	4723		NM_007103	ENSG00000167792	NDUFV1	CI-51K|CI51KD|MC1DN4|UQOR1	NADH:ubiquinone oxidoreductase core subunit V1	protein-coding
230921	chr9	129334051	129334750	+	0	NA	Intergenic	Intergenic	-2523	NR_120686	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
164020	chr3	53221471	53221630	+	0	NA	Intergenic	AluJb|SINE|Alu	34472	NM_001064	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
189638	chr5	176060551	176062050	+	0	NA	intron (NR_103794, intron 1 of 2)	CpG	755	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
210973	chr7	101754371	101754830	+	0	NA	Intergenic	Intergenic	-61407	NM_181500	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
89308	chr16	88719301	88719600	+	0	NA	intron (NM_001142864, intron 44 of 50)	intron (NM_001142864, intron 44 of 50)	-3113	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
4988	chr1	24317871	24318230	+	0	NA	Intergenic	Intergenic	-1307	NM_198174	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
158313	chr22	50424101	50424750	+	0	NA	intron (NM_001351641, intron 10 of 23)	CpG	16983	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
118393	chr19	35734351	35734530	+	0	NA	intron (NM_014727, intron 30 of 36)	intron (NM_014727, intron 30 of 36)	8012	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
9443	chr1	49640221	49640480	+	0	NA	intron (NR_136623, intron 2 of 12)	intron (NR_136623, intron 2 of 12)	-168265	NR_046839	100874313		NR_046839	ENSG00000225623	AGBL4-IT1	-	AGBL4 intronic transcript 1	ncRNA
76855	chr15	77901351	77901650	+	0	NA	Intergenic	Intergenic	25346	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
117608	chr19	22633921	22634850	+	0	NA	promoter-TSS (NM_020855)	promoter-TSS (NM_020855)	61	NM_020855	57615		NM_020855	ENSG00000229676	ZNF492	ZNF115	zinc finger protein 492	protein-coding
62908	chr13	110914601	110916330	+	0	NA	promoter-TSS (NM_017664)	promoter-TSS (NM_017664)	-396	NR_104587	55608		NM_017664	ENSG00000088448	ANKRD10	-	ankyrin repeat domain 10	protein-coding
179654	chr4	189490671	189491230	+	0	NA	Intergenic	Intergenic	-168656	NR_121679	101928971		NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
42811	chr11	72817901	72818100	+	0	NA	intron (NM_033388, intron 3 of 17)	L2b|LINE|L2	3589	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
145542	chr20	44190051	44190550	+	0	NA	Intergenic	Intergenic	-3112	NM_175913	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
90894	chr17	2403271	2403800	+	0	NA	Intergenic	Intergenic	-2475	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
205119	chr7	6874901	6875100	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-48725	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
6957	chr1	31763701	31765380	+	0	NA	promoter-TSS (NM_001294335)	promoter-TSS (NM_001294335)	-200	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
135117	chr2	157414201	157415230	+	0	NA	TTS (NM_004288)	TTS (NM_004288)	29374	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
151383	chr21	45924071	45924430	+	0	NA	intron (NR_145493, intron 10 of 12)	CpG	-48720	NR_109931	101928796		NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
162279	chr3	47376621	47376880	+	0	NA	Intergenic	Intergenic	-4271	NM_001304482	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
41386	chr11	66004351	66005250	+	0	NA	TTS (NM_001143985)	TTS (NM_001143985)	2297	NM_003860	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
82447	chr16	16361201	16361400	+	0	NA	intron (NR_146336, intron 20 of 34)	intron (NR_146336, intron 20 of 34)	-7576	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
161995	chr3	46371751	46371850	+	0	NA	intron (NR_125406, intron 2 of 3)	intron (NR_125406, intron 2 of 3)	1658	NM_001100168	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
144730	chr20	36578721	36579180	+	0	NA	exon (NM_021809, exon 2 of 3)	exon (NM_021809, exon 2 of 3)	4396	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
89742	chr16	89438371	89438530	+	0	NA	intron (NR_110932, intron 1 of 2)	AluSx|SINE|Alu	7532	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
2671	chr1	10514281	10515000	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	39690	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
109422	chr19	701301	701500	+	0	NA	Intergenic	AluSq|SINE|Alu	-5948	NM_214710	400668		NM_214710	ENSG00000185198	PRSS57	NSP4|PRSSL1|UNQ782	serine protease 57	protein-coding
119705	chr19	41127851	41128680	+	0	NA	non-coding (NR_135528, exon 10 of 10)	non-coding (NR_135528, exon 10 of 10)	13833	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
182902	chr5	70290201	70291100	+	0	NA	promoter-TSS (NR_029426).3	promoter-TSS (NR_029426).3	-473	NR_029426	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
46121	chr11	122981471	122982100	+	0	NA	promoter-TSS (NM_001098169)	promoter-TSS (NM_001098169)	49	NM_001098169	390259		NM_001098169	ENSG00000188909	BSX	BSX1	brain specific homeobox	protein-coding
83488	chr16	27409921	27411100	+	0	NA	intron (NM_181079, intron 2 of 9)	intron (NM_181079, intron 2 of 9)	8336	NM_181078	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
29113	chr10	68343121	68343600	+	0	NA	TTS (NM_001322449)	TTS (NM_001322449)	-10432	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
143250	chr20	25056401	25057700	+	0	NA	intron (NM_001252675, intron 1 of 13)	intron (NM_001252675, intron 1 of 13)	1089	NM_032501	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
17410	chr1	156645551	156646080	+	0	NA	intron (NM_198427, intron 1 of 7)	MIRb|SINE|MIR	3698	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
228245	chr9	97980851	97981150	+	0	NA	Intergenic	L1ME4c|LINE|L1	-2341	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
78324	chr15	90958221	90958680	+	0	NA	intron (NM_033544, intron 5 of 8)	AluSg|SINE|Alu	3574	NM_033544	91433		NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
46828	chr11	130923221	130923730	+	0	NA	Intergenic	Intergenic	-6996	NM_001347918	399979		NM_014758	ENSG00000120451	SNX19	CHET8	sorting nexin 19	protein-coding
57844	chr12	123254021	123254280	+	0	NA	intron (NM_001194995, intron 2 of 2)	intron (NM_001194995, intron 2 of 2)	14104	NM_001270434	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
51997	chr12	53966401	53967000	+	0	NA	intron (NR_047518, intron 1 of 3)	CpG	2056	NR_003716	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
33149	chr10	112429271	112429430	+	0	NA	TTS (NM_001351085)	TTS (NM_001351085)	17564	NM_022494	64429		NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|DHHC6|ZNF376	zinc finger DHHC-type palmitoyltransferase 6	protein-coding
187735	chr5	143434471	143435750	+	0	NA	promoter-TSS (NM_001364183)	promoter-TSS (NM_001364183)	-301	NM_001364183	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
216798	chr8	22549301	22550080	+	0	NA	Intergenic	Intergenic	-2237	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
153251	chr22	24062051	24062350	+	0	NA	intron (NM_012295, intron 13 of 36)	intron (NM_012295, intron 13 of 36)	50830	NM_001199281	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
182652	chr5	67188301	67188900	+	0	NA	intron (NM_005582, intron 1 of 2)	intron (NM_005582, intron 1 of 2)	8199	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
220771	chr8	102411701	102412200	+	0	NA	promoter-TSS (NR_168428)	promoter-TSS (NR_168428)	-389	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
126429	chr2	27840171	27840370	+	0	NA	intron (NM_001287580, intron 6 of 8)	AluY|SINE|Alu	-48439	NM_001329112	9577		NM_004899	ENSG00000158019	BABAM2	BRCC4|BRCC45|BRE	BRISC and BRCA1 A complex member 2	protein-coding
5141	chr1	24899301	24900730	+	0	NA	3' UTR (NM_004350, exon 5 of 5)	3' UTR (NM_004350, exon 5 of 5)	19401	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
101433	chr17	67423371	67423530	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	46169	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
179753	chr5	253901	254130	+	0	NA	intron (NM_004168, intron 13 of 14)	AluJb|SINE|Alu	17509	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
25217	chr10	5788921	5789450	+	0	NA	intron (NM_001115156, intron 3 of 9)	AluJo|SINE|Alu	24249	NM_001494	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
154731	chr22	36463721	36464180	+	0	NA	Intergenic	Intergenic	17690	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
219137	chr8	66115751	66116230	+	0	NA	Intergenic	Intergenic	-11139	NM_184086	84675		NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
237622	chrX	124012351	124012680	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	50809	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
178876	chr4	155371001	155371750	+	0	NA	intron (NM_001039580, intron 4 of 13)	(ATTT)n|Simple_repeat|Simple_repeat	5590	NM_001039580	79884		NM_024826	ENSG00000164114	MAP9	ASAP	microtubule associated protein 9	protein-coding
176550	chr4	98467271	98467980	+	0	NA	Intergenic	Intergenic	190986	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
238434	chrX	150983941	150984900	+	0	NA	intron (NM_001301228, intron 1 of 4)	CpG	1035	NM_001301228	3149		NM_005342	ENSG00000029993	HMGB3	HMG-2a|HMG-4|HMG2A|HMG4	high mobility group box 3	protein-coding
103041	chr17	77127601	77128600	+	0	NA	intron (NM_001204410, intron 3 of 18)	intron (NM_001204410, intron 3 of 18)	-12869	NM_001143999	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
224779	chr9	22045521	22045780	+	0	NA	intron (NR_047539, intron 3 of 12)	intron (NR_047539, intron 3 of 12)	-36337	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
213540	chr7	139093451	139093900	+	0	NA	intron (NM_020119, intron 1 of 12)	LTR7|LTR|ERV1	16045	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
28925	chr10	63180551	63180850	+	0	NA	intron (NM_001322258, intron 21 of 24)	AluSz|SINE|Alu	47372	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
94868	chr17	31516521	31517880	+	0	NA	intron (NM_001346748, intron 1 of 12)	MER51A|LTR|ERV1	-17683	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
93618	chr17	19156351	19156830	+	0	NA	intron (NR_160286, intron 3 of 3).2	L2b|LINE|L2	6034	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
63899	chr14	21874001	21874580	+	0	NA	Intergenic	Intergenic	-203273	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
66633	chr14	63852551	63854240	+	0	NA	intron (NM_015180, intron 1 of 114)	CpG	391	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
33347	chr10	117134221	117134880	+	0	NA	exon (NM_001112704, exon 3 of 3)	exon (NM_001112704, exon 3 of 3)	3720	NM_199131	11023		NM_199131	ENSG00000148704	VAX1	MCOPS11	ventral anterior homeobox 1	protein-coding
70476	chr14	102076251	102076950	+	0	NA	Intergenic	AluY|SINE|Alu	10444	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
150739	chr21	43759401	43760000	+	0	NA	3' UTR (NM_003681, exon 11 of 11)	3' UTR (NM_003681, exon 11 of 11)	16608	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
17858	chr1	159929501	159929950	+	0	NA	exon (NM_020789, exon 17 of 21)	exon (NM_020789, exon 17 of 21)	-4218	NM_003564	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
181187	chr5	39116051	39116550	+	0	NA	intron (NM_199335, intron 15 of 17)	intron (NM_199335, intron 15 of 17)	-41901	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
155467	chr22	38485951	38486400	+	0	NA	exon (NM_001098504, exon 13 of 13)	exon (NM_001098504, exon 13 of 13)	18079	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
56370	chr12	113155501	113156230	+	0	NA	intron (NM_001144872, intron 6 of 7)	intron (NM_001144872, intron 6 of 7)	3312	NR_106956	102466222		NR_106956	ENSG00000276908	MIR7106	hsa-mir-7106	microRNA 7106	ncRNA
106165	chr18	9929101	9929300	+	0	NA	intron (NM_194434, intron 1 of 5)	MER20B|DNA|hAT-Charlie	15184	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
145797	chr20	45411521	45411780	+	0	NA	Intergenic	AluSx|SINE|Alu	3361	NM_001048225	55861		NM_018478	ENSG00000244274	DBNDD2	C20orf35|CK1BP|HSMNP1	dysbindin domain containing 2	protein-coding
94161	chr17	28368771	28369130	+	0	NA	exon (NM_000638, exon 5 of 8)	exon (NM_000638, exon 5 of 8)	1357	NM_000638	7448		NM_000638	ENSG00000109072	VTN	V75|VN|VNT	vitronectin	protein-coding
86093	chr16	57643221	57643480	+	0	NA	intron (NM_001370454, intron 2 of 13)	intron (NM_001370454, intron 2 of 13)	3858	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
99104	chr17	49185621	49185880	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	23631	NM_031498	2793		NM_031498	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG9|GNGT8|HG3I	G protein subunit gamma transducin 2	protein-coding
163975	chr3	53046001	53047500	+	0	NA	promoter-TSS (NM_016329)	promoter-TSS (NM_016329)	-677	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
134022	chr2	131043951	131044050	+	0	NA	intron (NM_001375902, intron 8 of 10)	intron (NM_001375902, intron 8 of 10)	49162	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
172140	chr4	1194801	1195580	+	0	NA	TTS (NR_024569)	TTS (NR_024569)	13772	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
152869	chr22	22431501	22431930	+	0	NA	Intergenic	Intergenic	77027	NR_130643	140883		NM_080764	ENSG00000275004	ZNF280B	5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632	zinc finger protein 280B	protein-coding
188117	chr5	150385251	150385350	+	0	NA	TTS (NM_001008657)	TTS (NM_001008657)	27456	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
17151	chr1	156197551	156197850	+	0	NA	intron (NR_104408, intron 2 of 3)	AluY|SINE|Alu	3596	NM_001286184	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
80391	chr16	2553021	2553480	+	0	NA	intron (NM_031268, intron 1 of 10)	AluJr|SINE|Alu	15229	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
60487	chr13	41265351	41265650	+	0	NA	intron (NM_001354073, intron 1 of 14)	intron (NM_001354073, intron 1 of 14)	-1924	NM_004294	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
182535	chr5	65656951	65657250	+	0	NA	intron (NM_001093755, intron 8 of 12)	AluSz|SINE|Alu	32073	NM_024941	80006		NM_024941	ENSG00000113597	TRAPPC13	C5orf44|SHLD3	trafficking protein particle complex subunit 13	protein-coding
32512	chr10	102773721	102774380	+	0	NA	intron (NM_001083913, intron 1 of 3)	intron (NM_001083913, intron 1 of 3)	-2171	NM_017787	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
218618	chr8	56072751	56072850	+	0	NA	TTS (NM_001023)	TTS (NM_001023)	1101	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
195182	chr6	36030771	36030930	+	0	NA	intron (NM_139014, intron 1 of 10)	intron (NM_139014, intron 1 of 10)	3042	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
95421	chr17	36094901	36095300	+	0	NA	Intergenic	Intergenic	-4957	NM_002983	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
91429	chr17	4729451	4729800	+	0	NA	Intergenic	AluJr|SINE|Alu	-1803	NM_001305000	400569		NM_001001683	ENSG00000161920	MED11	HSPC296|NDDRSB	mediator complex subunit 11	protein-coding
211415	chr7	105047951	105048250	+	0	NA	intron (NM_182931, intron 3 of 26)	AluJb|SINE|Alu	33895	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
167126	chr3	127681771	127682080	+	0	NA	TTS (NR_033429)	TTS (NR_033429)	8973	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
49071	chr12	14417721	14418080	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	32619	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
31116	chr10	89335351	89335750	+	0	NA	intron (NM_001031683, intron 1 of 1)	intron (NM_001031683, intron 1 of 1)	3021	NM_001289759	3437		NM_001549	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41	interferon induced protein with tetratricopeptide repeats 3	protein-coding
147319	chr20	57717521	57717780	+	0	NA	Intergenic	Intergenic	-6114	NM_199171	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
75312	chr15	65295521	65297200	+	0	NA	TTS (NR_002756)	TTS (NR_002756)	309	NR_002756	26831		NR_002756	ENSG00000199568	RNU5A-1	RNU5|RNU5A|RNU5C|U5A|U5B1	RNA, U5A small nuclear 1	snRNA
132218	chr2	102240471	102241160	+	0	NA	TTS (NM_001351448)	TTS (NM_001351448)	53501	NM_001351446	8808		NM_003854	ENSG00000115598	IL1RL2	IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2	interleukin 1 receptor like 2	protein-coding
144366	chr20	35087951	35088480	+	0	NA	intron (NM_199368, intron 1 of 18)	MIR|SINE|MIR	4592	NM_015638	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
75588	chr15	67089151	67089450	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	23698	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
104927	chr17	81922471	81922630	+	0	NA	3' UTR (NM_002359, exon 3 of 3)	3' UTR (NM_002359, exon 3 of 3)	916	NM_032711	4097		NM_002359	ENSG00000197063	MAFG	hMAF	MAF bZIP transcription factor G	protein-coding
211688	chr7	106660801	106663350	+	0	NA	promoter-TSS (NM_175884)	promoter-TSS (NM_175884)	-917	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
218485	chr8	51901971	51902430	+	0	NA	Intergenic	Intergenic	-3014	NM_001286782	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
234929	chrX	37846071	37846530	+	0	NA	intron (NM_006520, intron 2 of 4)	intron (NM_006520, intron 2 of 4)	1271	NM_006520	6990		NM_006520	ENSG00000165169	DYNLT3	RP3|TCTE1L|TCTEX1L	dynein light chain Tctex-type 3	protein-coding
156394	chr22	41110151	41110930	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluSz|SINE|Alu	17948	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
116314	chr19	17792921	17793500	+	0	NA	Intergenic	AluYc|SINE|Alu	-1928	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
214008	chr7	143246071	143246230	+	0	NA	intron (NM_001363538, intron 8 of 11)	L2c|LINE|L2	-17279	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
58746	chr12	132605821	132606080	+	0	NA	intron (NM_001195520, intron 2 of 5)	intron (NM_001195520, intron 2 of 5)	4632	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
215252	chr7	156940921	156941380	+	0	NA	Intergenic	CpG	-8562	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
193822	chr6	31475971	31476130	+	0	NA	Intergenic	Intergenic	4821	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
121521	chr19	47222551	47222650	+	0	NA	intron (NM_001127242, intron 1 of 1)	AluSx|SINE|Alu	-4342	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
205060	chr7	6601401	6601600	+	0	NA	intron (NM_001303039, intron 5 of 6)	AluSz|SINE|Alu	11479	NM_001303039	79034		NM_024067	ENSG00000146576	INTS15	C7orf26	integrator complex subunit 15	protein-coding
32388	chr10	102419351	102420200	+	0	NA	promoter-TSS (NM_002779)	promoter-TSS (NM_002779)	-39	NM_024326	79176		NM_024326	ENSG00000107872	FBXL15	FBXO37|Fbl15|JET|PSD	F-box and leucine rich repeat protein 15	protein-coding
115561	chr19	15623701	15623930	+	0	NA	intron (NM_007253, intron 8 of 12)	intron (NM_007253, intron 8 of 12)	8597	NM_007253	11283		NM_007253	ENSG00000186526	CYP4F8	CPF8|CYPIVF8	cytochrome P450 family 4 subfamily F member 8	protein-coding
54759	chr12	94099371	94099750	+	0	NA	Intergenic	L2a|LINE|L2	-49017	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
197643	chr6	83884421	83884750	+	0	NA	intron (NM_016230, intron 2 of 15)	L1MEf|LINE|L1	24896	NM_016230	51167		NM_016230	ENSG00000065615	CYB5R4	NCB5OR|cb5/cb5R|dJ676J13.1	cytochrome b5 reductase 4	protein-coding
178849	chr4	153790001	153790200	+	0	NA	Intergenic	Intergenic	-1017	NM_003013	6423		NM_003013	ENSG00000145423	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled related protein 2	protein-coding
52682	chr12	56465521	56465780	+	0	NA	Intergenic	Intergenic	-2928	NM_207344	283377		NM_207344	ENSG00000176422	SPRYD4	-	SPRY domain containing 4	protein-coding
150601	chr21	43358221	43358480	+	0	NA	non-coding (NR_131902, exon 2 of 2)	non-coding (NR_131902, exon 2 of 2)	3999	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
158160	chr22	50200071	50201880	+	0	NA	promoter-TSS (NM_031454)	promoter-TSS (NM_031454)	-36	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
147013	chr20	53582981	53583530	+	0	NA	intron (NM_006526, intron 1 of 5)	intron (NM_006526, intron 1 of 5)	10584	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
219269	chr8	67392921	67393680	+	0	NA	intron (NR_136224, intron 1 of 4)	intron (NR_136224, intron 1 of 4)	49466	NR_136224	102724708		NR_136223		ARFGEF1-DT	-	ARFGEF1 divergent transcript	ncRNA
227326	chr9	89446281	89446700	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	33400	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
140950	chr2	237752501	237753060	+	0	NA	intron (NM_001137550, intron 14 of 23)	intron (NM_001137550, intron 14 of 23)	-45999	NM_001080504	375316		NM_198852	ENSG00000177483	RBM44	-	RNA binding motif protein 44	protein-coding
46730	chr11	128916821	128917080	+	0	NA	3' UTR (NM_000890, exon 3 of 3)	3' UTR (NM_000890, exon 3 of 3)	-10719	NR_045767	219833		NM_145013	ENSG00000174370	KCNJ5-AS1	C11orf45	KCNJ5 antisense RNA 1	ncRNA
123890	chr19	55323651	55323950	+	0	NA	intron (NR_104066, intron 1 of 6)	AluSx|SINE|Alu	1541	NM_001085488	284417		NM_001085488	ENSG00000180061	TMEM150B	DRAM3|TMEM224|TTN2	transmembrane protein 150B	protein-coding
144398	chr20	35271021	35271280	+	0	NA	intron (NM_006690, intron 7 of 8)	intron (NM_006690, intron 7 of 8)	6972	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
116087	chr19	17260521	17261730	+	0	NA	intron (NR_135632, intron 4 of 13)	L2|LINE|L2	3620	NM_001297703	83878		NM_031941	ENSG00000130307	USHBP1	AIEBP|MCC2	USH1 protein network component harmonin binding protein 1	protein-coding
40193	chr11	62925171	62925650	+	0	NA	Intergenic	Intergenic	-4047	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
168412	chr3	142275571	142275930	+	0	NA	Intergenic	MIRb|SINE|MIR	-50165	NM_001039547	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
13914	chr1	120062901	120063300	+	0	NA	intron (NM_001200001, intron 1 of 21)	intron (NM_001200001, intron 1 of 21)	6562	NM_024408	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
155838	chr22	39416101	39416700	+	0	NA	intron (NM_153497, intron 3 of 10)	intron (NM_153497, intron 3 of 10)	-15760	NR_040535	100506472		NR_040535		LOC100506472	-	uncharacterized LOC100506472	ncRNA
66354	chr14	61457901	61458850	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	111819	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
15593	chr1	150584901	150585100	+	0	NA	Intergenic	AluSg7|SINE|Alu	-5262	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
150951	chr21	44304221	44304480	+	0	NA	5' UTR (NM_001002021, exon 2 of 25)	5' UTR (NM_001002021, exon 2 of 25)	4297	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
106504	chr18	19096601	19096800	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2015113	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
226050	chr9	60758371	60758530	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-155957	NM_001113541	727905		NM_001113541	ENSG00000276581	SPATA31A5	FAM75A5	SPATA31 subfamily A member 5	protein-coding
185410	chr5	129135751	129135850	+	0	NA	Intergenic	MSTB2|LTR|ERVL-MaLR	38112	NR_039776	100616175		NR_039776	ENSG00000264563	MIR4633	-	microRNA 4633	ncRNA
78094	chr15	90248871	90250280	+	0	NA	promoter-TSS (NR_104604)	promoter-TSS (NR_104604)	43	NR_104604								
207593	chr7	44965551	44965950	+	0	NA	exon (NM_033054, exon 17 of 22)	exon (NM_033054, exon 17 of 22)	13265	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
216330	chr8	13134271	13134430	+	0	NA	intron (NM_182643, intron 5 of 17)	L2a|LINE|L2	-1061	NM_006094	10395		NM_006094	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
234194	chrX	12890571	12890800	+	0	NA	TTS (NM_016562)	TTS (NM_016562)	-15935	NM_138636	51311		NM_016610	ENSG00000101916	TLR8	CD288|IMD98|TLR-8|hTLR8	toll like receptor 8	protein-coding
140600	chr2	233397021	233397680	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	9196	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
148161	chr20	63523301	63524230	+	0	NA	Intergenic	LTR10A|LTR|ERV1	3000	NM_024299	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
136661	chr2	180591021	180591400	+	0	NA	Intergenic	L1PA5|LINE|L1	-100894	NR_104323	101669767		NR_104319	ENSG00000281131	SCHLAP1	LINC00913|PCAT11|PCAT114	SWI/SNF complex antagonist associated with prostate cancer 1	ncRNA
173401	chr4	8035251	8035800	+	0	NA	intron (NM_001286688, intron 5 of 14)	intron (NM_001286688, intron 5 of 14)	-30144	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
161482	chr3	42500421	42500680	+	0	NA	intron (NM_001251882, intron 1 of 13)	intron (NM_001251882, intron 1 of 13)	-2062	NM_001251883	7433		NM_004624	ENSG00000114812	VIPR1	HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R	vasoactive intestinal peptide receptor 1	protein-coding
177220	chr4	108511671	108512030	+	0	NA	Intergenic	Intergenic	-45383	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
96784	chr17	41793271	41793430	+	0	NA	Intergenic	Intergenic	-6582	NM_001352776	3728		NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PG|PKGB	junction plakoglobin	protein-coding
162246	chr3	47276121	47276380	+	0	NA	intron (NM_001134878, intron 3 of 21)	intron (NM_001134878, intron 3 of 21)	6348	NM_001377477	64147		NM_022342	ENSG00000088727	KIF9	-	kinesin family member 9	protein-coding
35623	chr11	1792471	1793000	+	0	NA	Intergenic	Intergenic	-28808	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
134944	chr2	151633151	151633550	+	0	NA	intron (NM_001164508, intron 65 of 181)	intron (NM_001164508, intron 65 of 181)	101126	NM_001271208	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
136805	chr2	181682601	181682880	+	0	NA	Intergenic	Intergenic	-2075	NR_146175	4760		NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|T2D|bHLHa3	neuronal differentiation 1	protein-coding
80856	chr16	3527271	3527780	+	0	NA	intron (NM_015041, intron 9 of 11)	LTR13|LTR|ERVK	17631	NM_024793	23059		NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
233221	chr9	137233121	137234600	+	0	NA	intron (NM_080877, intron 8 of 12)	intron (NM_080877, intron 8 of 12)	2927	NM_080877	142680		NM_080877	ENSG00000198569	SLC34A3	HHRH|NPT2C|NPTIIc	solute carrier family 34 member 3	protein-coding
232388	chr9	135967321	135968350	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6462	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
174177	chr4	36295801	36296000	+	0	NA	intron (NR_165630, intron 5 of 10)	L1M6|LINE|L1	14284	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
125155	chr2	10027371	10027530	+	0	NA	Intergenic	Intergenic	15951	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
237400	chrX	119579301	119580050	+	0	NA	intron (NM_181762, intron 3 of 4)	MIR|SINE|MIR	5112	NM_001282161	7319		NM_003336	ENSG00000077721	UBE2A	HHR6A|MRXS30|MRXSN|RAD6A|UBC2	ubiquitin conjugating enzyme E2 A	protein-coding
5013	chr1	24481821	24482550	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-20159	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
28717	chr10	61882821	61883480	+	0	NA	Intergenic	LTR79|LTR|ERVL	-18549	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
38606	chr11	46317101	46317500	+	0	NA	intron (NM_052854, intron 9 of 11)	intron (NM_052854, intron 9 of 11)	-15626	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
196154	chr6	42454651	42454750	+	0	NA	Intergenic	Intergenic	-2476	NM_033502	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
152735	chr22	21688421	21688800	+	0	NA	intron (NM_148175, intron 14 of 20)	intron (NM_148175, intron 14 of 20)	22598	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
109950	chr19	1371921	1372250	+	0	NA	TTS (NR_168275)	TTS (NR_168275)	-11822	NM_024407	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
59190	chr13	22076571	22077330	+	0	NA	Intergenic	Intergenic	-133335	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
197744	chr6	87164001	87164280	+	0	NA	intron (NM_015021, intron 1 of 7)	MLT1H2|LTR|ERVL-MaLR	8575	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
213273	chr7	134660401	134660600	+	0	NA	intron (NM_199186, intron 2 of 3)	intron (NM_199186, intron 2 of 3)	13647	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
157652	chr22	46131321	46131780	+	0	NA	Intergenic	Intergenic	17864	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
8593	chr1	41416951	41417350	+	0	NA	Intergenic	Intergenic	-41481	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
61762	chr13	74272871	74273030	+	0	NA	Intergenic	Intergenic	41506	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
142184	chr20	2884751	2885150	+	0	NA	intron (NM_001385311, intron 1 of 20)	AluYj4|SINE|Alu	11469	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
68825	chr14	91270651	91271250	+	0	NA	TTS (NM_001080414)	TTS (NM_001080414)	-17070	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
23999	chr1	235242271	235242430	+	0	NA	intron (NM_016374, intron 7 of 23)	intron (NM_016374, intron 7 of 23)	-52234	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
59165	chr13	21625451	21625630	+	0	NA	Intergenic	Intergenic	-21370	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
204242	chr7	2552501	2553150	+	0	NA	intron (NM_001350627, intron 2 of 12)	AluYm1|SINE|Alu	2699	NR_146879	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
109600	chr19	929351	929850	+	0	NA	exon (NM_005224, exon 2 of 9)	exon (NM_005224, exon 2 of 9)	3565	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
216284	chr8	12534051	12534150	+	0	NA	intron (NR_040092, intron 5 of 5)	HERVK11-int|LTR|ERVK	97087	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
53211	chr12	62274121	62275230	+	0	NA	intron (NM_001351164, intron 1 of 21)	intron (NM_001351164, intron 1 of 21)	14271	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
180539	chr5	14597901	14598380	+	0	NA	intron (NM_019018, intron 1 of 7)	intron (NM_019018, intron 1 of 7)	16348	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
209106	chr7	74889921	74891200	+	0	NA	promoter-TSS (NR_040584)	promoter-TSS (NR_040584)	52	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
990	chr1	1835821	1836080	+	0	NA	intron (NM_001282539, intron 1 of 10)	AluJo|SINE|Alu	55137	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
157902	chr22	49761021	49762350	+	0	NA	Intergenic	AluSq|SINE|Alu	62646	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
191775	chr6	14123721	14123980	+	0	NA	intron (NM_001040280, intron 2 of 4)	intron (NM_001040280, intron 2 of 4)	6078	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
150865	chr21	44092071	44092430	+	0	NA	intron (NM_003274, intron 19 of 22)	intron (NM_003274, intron 19 of 22)	-15149	NM_005049	5822		NM_005049	ENSG00000241945	PWP2	EHOC-17|PWP2H|UTP1	PWP2 small subunit processome component	protein-coding
211326	chr7	104328521	104328780	+	0	NA	promoter-TSS (NM_199000)	promoter-TSS (NM_199000)	-6	NM_199000	375612		NM_199000	ENSG00000187416	LHFPL3	LHFPL4	LHFPL tetraspan subfamily member 3	protein-coding
17912	chr1	160207151	160207800	+	0	NA	intron (NM_001297577, intron 2 of 4)	intron (NM_001297577, intron 2 of 4)	1394	NR_123725	729867		NR_123725	ENSG00000227741	LOC729867	-	uncharacterized LOC729867	ncRNA
64939	chr14	35807271	35807630	+	0	NA	intron (NM_014990, intron 1 of 40)	intron (NM_014990, intron 1 of 40)	1845	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
69685	chr14	98163201	98163600	+	0	NA	Intergenic	Intergenic	-185276	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
226834	chr9	77828321	77828580	+	0	NA	intron (NM_002072, intron 2 of 6)	intron (NM_002072, intron 2 of 6)	-180128	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
225366	chr9	34899521	34899900	+	0	NA	Intergenic	Intergenic	-3946	NM_001309427	100129969		NM_001309426	ENSG00000187791	SPATA31F3	FAM205C|FAM205CP	SPATA31 subfamily F member 3	protein-coding
169281	chr3	158104921	158105300	+	0	NA	exon (NM_003030, exon 2 of 6)	exon (NM_003030, exon 2 of 6)	1053	NM_006884	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
114725	chr19	13180421	13180880	+	0	NA	Intergenic	AluSx1|SINE|Alu	30239	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
11800	chr1	92599201	92599480	+	0	NA	intron (NM_001377211, intron 17 of 18)	intron (NM_001377211, intron 17 of 18)	-112415	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
104402	chr17	81047501	81047700	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	-10134	NM_001385147	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
99092	chr17	49005221	49005500	+	0	NA	intron (NM_001160423, intron 2 of 12)	intron (NM_001160423, intron 2 of 12)	7975	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
30574	chr10	79982251	79982350	+	0	NA	Intergenic	CpG	-33195	NM_003019	6441		NM_003019	ENSG00000133661	SFTPD	COLEC7|PSP-D|SFTP4|SP-D	surfactant protein D	protein-coding
165198	chr3	72738521	72739980	+	0	NA	Intergenic	CpG	-75001	NR_135531	105377162		NR_135531		LOC105377162	-	uncharacterized LOC105377162	ncRNA
138829	chr2	216388271	216388780	+	0	NA	Intergenic	LTR33|LTR|ERVL	-16042	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
71612	chr14	106663721	106664430	+	0	NA	Intergenic	Intergenic	181636	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
98517	chr17	47535321	47536450	+	0	NA	intron (NM_006310, intron 1 of 22)	AluSx3|SINE|Alu	4777	NM_006310	9520		NM_006310	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
208827	chr7	73681271	73681630	+	0	NA	3' UTR (NM_032317, exon 1 of 1)	3' UTR (NM_032317, exon 1 of 1)	2003	NM_032317	84277		NM_032317	ENSG00000176410	DNAJC30	LHONAR|LHONAR1|MC1DN38|WBSCR18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding
64288	chr14	23483351	23483530	+	0	NA	Intergenic	Intergenic	13737	NM_001042635	25983		NM_015514	ENSG00000129460	NGDN	C14orf120|CANu1|LCP5|NGD|lpd-2	neuroguidin	protein-coding
137240	chr2	191688171	191689130	+	0	NA	non-coding (NR_045622, exon 7 of 7)	non-coding (NR_045622, exon 7 of 7)	-1531	NR_131917	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
5780	chr1	26531201	26531500	+	0	NA	intron (NM_002953, intron 1 of 21)	intron (NM_002953, intron 1 of 21)	1589	NM_002953	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
175260	chr4	67216351	67216530	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	205560	NR_110747	101927237		NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
191466	chr6	11043401	11044650	+	0	NA	promoter-TSS (NR_038962)	promoter-TSS (NR_038962)	267	NR_038964	100506409		NR_038962	ENSG00000230314	ELOVL2-AS1	-	ELOVL2 antisense RNA 1	ncRNA
42242	chr11	68115251	68115550	+	0	NA	intron (NM_212469, intron 1 of 10)	L1MC1|LINE|L1	5988	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
113394	chr19	9283351	9283850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	26238	NM_198535	374879		NM_198535	ENSG00000196110	ZNF699	DEGCAGS|hang	zinc finger protein 699	protein-coding
153314	chr22	24244151	24244450	+	0	NA	intron (NM_001302464, intron 1 of 11)	(CACA)n|Simple_repeat|Simple_repeat	842	NM_001302465	2687		NM_004121	ENSG00000099998	GGT5	GGL|GGT 5|GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
55074	chr12	96571001	96571430	+	0	NA	intron (NM_001367885, intron 19 of 68)	intron (NM_001367885, intron 19 of 68)	81638	NM_001367885	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
11461	chr1	89941251	89941350	+	0	NA	Intergenic	Intergenic	53666	NR_002830	492303		NR_002830		GEMIN8P4	-	gem nuclear organelle associated protein 8 pseudogene 4	pseudo
15469	chr1	150356971	150357280	+	0	NA	Intergenic	AluJb|SINE|Alu	-6986	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
233433	chr9	137613471	137613630	+	0	NA	intron (NM_001317968, intron 3 of 6)	intron (NM_001317968, intron 3 of 6)	4979	NR_122036	85026		NM_032937	ENSG00000203993	ARRDC1-AS1	C9orf37	ARRDC1 antisense RNA 1	ncRNA
129111	chr2	65142421	65142800	+	0	NA	Intergenic	Intergenic	-12309	NM_015543	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
224797	chr9	22238851	22239280	+	0	NA	Intergenic	Intergenic	-207759	NM_022160	63951		NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
177118	chr4	108097871	108098600	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	68562	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
60039	chr13	32650671	32651080	+	0	NA	intron (NM_015032, intron 2 of 34)	intron (NM_015032, intron 2 of 34)	64423	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
145779	chr20	45369471	45369630	+	0	NA	TTS (NM_001197129)	TTS (NM_001197129)	6381	NR_003189	767557		NR_003189	ENSG00000254806	SYS1-DBNDD2	C20orf169-DBNDD2	SYS1-DBNDD2 readthrough (NMD candidate)	ncRNA
169000	chr3	152429471	152430030	+	0	NA	intron (NM_207295, intron 3 of 8)	intron (NM_207295, intron 3 of 8)	-88760	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
29096	chr10	68212671	68213000	+	0	NA	TTS (NR_045663)	TTS (NR_045663)	19278	NM_145178	220202		NM_145178	ENSG00000179774	ATOH7	Math5|NCRNA|PHPVAR|RNANC|bHLHa13	atonal bHLH transcription factor 7	protein-coding
174924	chr4	49116151	49116250	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	129558	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
14129	chr1	120952251	120953030	+	0	NA	non-coding (NR_024584, exon 3 of 4)	non-coding (NR_024584, exon 3 of 4)	10040	NR_104073	101954264		NR_104073	ENSG00000277610	RNVU1-4	RNU1-102|RNU1-50|RNVU1-5|vU1.4|vU1.5	RNA, variant U1 small nuclear 4	snRNA
84174	chr16	29814201	29814400	+	0	NA	3' UTR (NM_001256443, exon 2 of 2)	3' UTR (NM_001256443, exon 2 of 2)	-1852	NM_024516	79447		NM_024516	ENSG00000280789	PAGR1	C16orf53|GAS|PA1	PAXIP1 associated glutamate rich protein 1	protein-coding
68070	chr14	75265221	75265800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13318	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
176886	chr4	102780421	102780680	+	0	NA	intron (NR_125932, intron 4 of 4)	ERVL-E-int|LTR|ERVL	3513	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
26584	chr10	22001951	22004350	+	0	NA	intron (NM_022365, intron 1 of 11)	CpG	580	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
160484	chr3	30612551	30612930	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	6139	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
62162	chr13	97257721	97258450	+	0	NA	intron (NM_001382682, intron 1 of 7)	intron (NM_001382682, intron 1 of 7)	35752	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
80699	chr16	3058071	3060230	+	0	NA	non-coding (NR_123723, exon 1 of 5)	non-coding (NR_123723, exon 1 of 5)	220	NR_123723	100507419		NR_123723		MMP25-AS1	-	MMP25 antisense RNA 1	ncRNA
82051	chr16	12646871	12647230	+	0	NA	Intergenic	Intergenic	-73271	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
61566	chr13	67238271	67238530	+	0	NA	Intergenic	Intergenic	-8064	NM_001318374	5101		NM_020403	ENSG00000184226	PCDH9	-	protocadherin 9	protein-coding
46627	chr11	128626951	128627600	+	0	NA	Intergenic	Intergenic	-39717	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
157427	chr22	45165971	45166130	+	0	NA	intron (NM_153645, intron 1 of 8)	L2a|LINE|L2	1379	NM_153645	10762		NM_007172	ENSG00000093000	NUP50	NPAP60|NPAP60L	nucleoporin 50	protein-coding
31323	chr10	92843001	92843500	+	0	NA	intron (NM_001013848, intron 2 of 22)	intron (NM_001013848, intron 2 of 22)	-5205	NM_001319200	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
174199	chr4	37244951	37245050	+	0	NA	5' UTR (NM_001144990, exon 1 of 7)	5' UTR (NM_001144990, exon 1 of 7)	257	NM_001144990	57495		NM_001144990	ENSG00000174145	NWD2	KIAA1239	NACHT and WD repeat domain containing 2	protein-coding
65050	chr14	39232771	39233580	+	0	NA	promoter-TSS (NM_001329214)	promoter-TSS (NM_001329214)	-740	NM_001329214	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
187906	chr5	148838371	148838730	+	0	NA	Intergenic	Intergenic	11939	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
176507	chr4	94339671	94340480	+	0	NA	intron (NM_014485, intron 1 of 5)	AluSc|SINE|Alu	2761	NM_014485	27306		NM_014485	ENSG00000163106	HPGDS	GSTS|GSTS1|GSTS1-1|PGD2|PGDS	hematopoietic prostaglandin D synthase	protein-coding
31475	chr10	96557021	96557280	+	0	NA	intron (NM_020123, intron 5 of 14)	L2-1_AMi|LINE|L2	29862	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
229785	chr9	125237301	125237680	+	0	NA	intron (NM_005347, intron 7 of 7)	AluSx1|SINE|Alu	3853	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
78102	chr15	90270821	90271330	+	0	NA	intron (NR_028052, intron 1 of 1)	AluSz6|SINE|Alu	-5316	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
109878	chr19	1250501	1251100	+	0	NA	intron (NM_177401, intron 2 of 7)	CpG-13010	2247	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
163641	chr3	52086951	52087200	+	0	NA	intron (NM_001161580, intron 9 of 9)	intron (NM_001161580, intron 9 of 9)	-21963	NR_027331	100128378		NM_001123039		LINC00696	C3orf74	long intergenic non-protein coding RNA 696	ncRNA
46974	chr11	135074621	135074880	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	89398	NR_135050	100507548		NR_135050		LOC100507548	-	uncharacterized LOC100507548	ncRNA
57883	chr12	123429151	123429250	+	0	NA	intron (NR_130703, intron 1 of 2)	FLAM_C|SINE|Alu	7533	NR_130703	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
232626	chr9	136448451	136448850	+	0	NA	intron (NM_014866, intron 23 of 31)	intron (NM_014866, intron 23 of 31)	-8805	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
10997	chr1	84572771	84573230	+	0	NA	intron (NM_004388, intron 1 of 6)	intron (NM_004388, intron 1 of 6)	1440	NM_004388	1486		NM_004388	ENSG00000117151	CTBS	CTB	chitobiase	protein-coding
79150	chr16	270421	270880	+	0	NA	TTS (NR_104317)	TTS (NR_104317)	5294	NM_183337	8786		NM_003834	ENSG00000076344	RGS11	RS11	regulator of G protein signaling 11	protein-coding
1041	chr1	1881871	1882400	+	0	NA	intron (NM_001282538, intron 1 of 9)	L2b|LINE|L2	8952	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
132120	chr2	101622551	101622650	+	0	NA	Intergenic	Intergenic	-75103	NM_145686	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
174042	chr4	26873221	26874550	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	13044	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
63656	chr14	20998221	20998480	+	0	NA	promoter-TSS (NM_001256588)	promoter-TSS (NM_001256588)	813	NR_110139	101929718		NR_110139	ENSG00000258471	LOC101929718	-	uncharacterized LOC101929718	ncRNA
143207	chr20	24956901	24957300	+	0	NA	intron (NM_003650, intron 1 of 3)	(GGTGACA)n|Simple_repeat|Simple_repeat	7831	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
56529	chr12	116708651	116709180	+	0	NA	Intergenic	Intergenic	29154	NM_001353625	79794		NM_024738	ENSG00000111412	SPRING1	C12orf49|LUR1|POST1|SPRING	SREBF pathway regulator in golgi 1	protein-coding
187656	chr5	143105601	143105800	+	0	NA	intron (NR_146198, intron 17 of 22)	intron (NR_146198, intron 17 of 22)	-86800	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
203480	chr7	522221	523030	+	0	NA	non-coding (NR_033963, exon 1 of 3)	non-coding (NR_033963, exon 1 of 3)	2234	NR_033963	441307		NR_033963	ENSG00000223855	PDGFA-DT	HRAT92	PDGFA divergent transcript	ncRNA
118226	chr19	35187351	35187680	+	0	NA	Intergenic	L1MB8|LINE|L1	32780	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
101843	chr17	73956471	73956880	+	0	NA	Intergenic	MIR3|SINE|MIR	-128138	NR_027146	283982		NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
159629	chr3	15293651	15294030	+	0	NA	intron (NM_004844, intron 3 of 8)	AluSx|SINE|Alu	38746	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
238844	chrX	154468401	154468600	+	0	NA	exon (NM_017514, exon 23 of 33)	exon (NM_017514, exon 23 of 33)	10219	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
119936	chr19	41861751	41862130	+	0	NA	intron (NM_001321485, intron 3 of 5)	intron (NM_001321485, intron 3 of 5)	1536	NM_001321483	6223		NM_001022	ENSG00000105372	RPS19	DBA|DBA1|LOH19CR1|S19|eS19	ribosomal protein S19	protein-coding
70115	chr14	100244701	100245130	+	0	NA	intron (NM_003403, intron 1 of 4)	intron (NM_003403, intron 1 of 4)	5771	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
225398	chr9	35046071	35046250	+	0	NA	TTS (NM_001040412)	TTS (NM_001040412)	3920	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
50785	chr12	49043721	49044650	+	0	NA	intron (NM_003482, intron 22 of 54)	intron (NM_003482, intron 22 of 54)	16609	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
28209	chr10	44973751	44974080	+	0	NA	intron (NM_032023, intron 3 of 10)	intron (NM_032023, intron 3 of 10)	4894	NM_007021	11067		NM_007021	ENSG00000165507	DEPP1	C10orf10|DEPP|FIG|Fseg	DEPP autophagy regulator 1	protein-coding
208545	chr7	70695751	70696400	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-436069	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
126810	chr2	30449171	30449330	+	0	NA	intron (NM_001304446, intron 1 of 5)	intron (NM_001304446, intron 1 of 5)	2004	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
153087	chr22	23403751	23404050	+	0	NA	Intergenic	Intergenic	-1288	NR_003950	150244		NM_152509	ENSG00000290920	ZDHHC8BP	ZDHHC8P|ZDHHC8P1	ZDHHC8B, pseudogene	pseudo
165166	chr3	72343971	72344330	+	0	NA	Intergenic	Intergenic	102473	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
206356	chr7	30476701	30476900	+	0	NA	intron (NM_001354849, intron 1 of 12)	intron (NM_001354849, intron 1 of 12)	1984	NM_006092	10392		NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1|hNod1	nucleotide binding oligomerization domain containing 1	protein-coding
227415	chr9	89597851	89598380	+	0	NA	Intergenic	Intergenic	-6897	NM_006705	10912		NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
58054	chr12	124484221	124484680	+	0	NA	intron (NM_001077261, intron 4 of 47)	intron (NM_001077261, intron 4 of 47)	83162	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
32716	chr10	104230271	104230730	+	0	NA	intron (NM_025145, intron 2 of 37)	intron (NM_025145, intron 2 of 37)	1864	NM_025145	80217		NM_025145	ENSG00000197748	CFAP43	C10orf79|HYDNP1|SPGF19|WDR96|bA373N18.2	cilia and flagella associated protein 43	protein-coding
22607	chr1	223323671	223324100	+	0	NA	intron (NM_001037175, intron 2 of 5)	intron (NM_001037175, intron 2 of 5)	40291	NM_001037175	55061		NM_017982	ENSG00000143502	SUSD4	PRO222	sushi domain containing 4	protein-coding
198695	chr6	108115851	108116300	+	0	NA	Intergenic	Intergenic	-7558	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
191498	chr6	11230351	11231000	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	1993	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
14097	chr1	120911601	120913200	+	0	NA	promoter-TSS (NR_024510)	promoter-TSS (NR_024510)	162	NR_024584	728855		NR_024510		LINC00623	CH17-118O6.2	long intergenic non-protein coding RNA 623	ncRNA
57721	chr12	122876151	122876250	+	0	NA	intron (NM_024667, intron 1 of 3)	HAL1b|LINE|L1	19924	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
117521	chr19	20237751	20238850	+	0	NA	Intergenic	Intergenic	71086	NM_052852	90649		NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
207020	chr7	38373521	38373780	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	32073	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
140878	chr2	237596451	237596750	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-5866	NM_022449	64284		NM_022449	ENSG00000124839	RAB17	-	RAB17, member RAS oncogene family	protein-coding
24839	chr10	377371	377530	+	0	NA	intron (NM_014974, intron 17 of 36)	intron (NM_014974, intron 17 of 36)	197456	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
230558	chr9	128438451	128439200	+	0	NA	intron (NR_031672, intron 2 of 2).4	intron (NR_031672, intron 2 of 2).4	-16330	NM_153436	4957		NM_002540	ENSG00000136811	ODF2	CT134|ODF2/1|ODF2/2|ODF84	outer dense fiber of sperm tails 2	protein-coding
199304	chr6	112041721	112041980	+	0	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	-12254	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
58542	chr12	132241491	132241900	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-33696	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
235916	chrX	53083571	53085100	+	0	NA	intron (NM_022117, intron 1 of 6)	intron (NM_022117, intron 1 of 6)	1968	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
199031	chr6	111261101	111261630	+	0	NA	intron (NM_153369, intron 1 of 3)	AluJb|SINE|Alu	2026	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
227688	chr9	93004871	93005030	+	0	NA	intron (NM_001369951, intron 5 of 17)	intron (NM_001369951, intron 5 of 17)	9994	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
74799	chr15	63436651	63437830	+	0	NA	non-coding (NR_120375, exon 7 of 7)	non-coding (NR_120375, exon 7 of 7)	47010	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
104174	chr17	80418751	80419450	+	0	NA	promoter-TSS (NR_039883)	promoter-TSS (NR_039883)	-318	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
137573	chr2	197259701	197260050	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	42644	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
118077	chr19	34358071	34358230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6590	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
68463	chr14	86038371	86038630	+	0	NA	intron (NR_110155, intron 1 of 3)	MSTC-int|LTR|ERVL-MaLR	103822	NR_110155	101928767		NR_110155	ENSG00000258733	LINC02328	-	long intergenic non-protein coding RNA 2328	ncRNA
121958	chr19	48476471	48476630	+	0	NA	intron (NM_017457, intron 8 of 11)	intron (NM_017457, intron 8 of 11)	7181	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
12185	chr1	100370351	100371250	+	0	NA	intron (NM_001319210, intron 2 of 16)	L1PA16|LINE|L1	18294	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
162122	chr3	46933951	46934250	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	42401	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
9651	chr1	52615551	52615850	+	0	NA	Intergenic	Intergenic	13329	NM_015696	2882		NM_015696	ENSG00000116157	GPX7	CL683|GPX6|GPx-7|GSHPx-7|NPGPx	glutathione peroxidase 7	protein-coding
193478	chr6	30538701	30539450	+	0	NA	Intergenic	AluSx|SINE|Alu	-17634	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
125613	chr2	18605251	18605350	+	0	NA	Intergenic	MIRc|SINE|MIR	-15720	NM_001199103	100526794		NM_001199103	ENSG00000250741	NT5C1B-RDH14	AIRP|NT5C1B|cN-IB|cN1B	NT5C1B-RDH14 readthrough	protein-coding
41718	chr11	66654271	66654930	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluJb|SINE|Alu	15897	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
29326	chr10	69398651	69398830	+	0	NA	exon (NM_033500, exon 21 of 22)	exon (NM_033500, exon 21 of 22)	18178	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
40016	chr11	62663101	62663430	+	0	NA	non-coding (NR_104414, exon 2 of 3)	non-coding (NR_104414, exon 2 of 3)	1945	NM_001286086	102288414		NM_001286086	ENSG00000278615	C11orf98	C11orf48	chromosome 11 open reading frame 98	protein-coding
180728	chr5	31583551	31583680	+	0	NA	Intergenic	AluSx|SINE|Alu	51314	NM_018356	55322		NM_018356	ENSG00000082213	C5orf22	-	chromosome 5 open reading frame 22	protein-coding
132773	chr2	109820901	109821300	+	0	NA	intron (NM_032260, intron 9 of 19)	L1MB8|LINE|L1	26491	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
204126	chr7	2315921	2316180	+	0	NA	Intergenic	(CACT)n|Simple_repeat|Simple_repeat	-1609	NM_013321	29886		NM_013321	ENSG00000106266	SNX8	Mvp1	sorting nexin 8	protein-coding
145746	chr20	45096871	45097030	+	0	NA	intron (NM_002251, intron 4 of 4)	intron (NM_002251, intron 4 of 4)	4177	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
1326	chr1	2417551	2418330	+	0	NA	Intergenic	Intergenic	-4113	NM_001374427	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
18048	chr1	160621421	160622100	+	0	NA	intron (NM_003037, intron 4 of 6)	intron (NM_003037, intron 4 of 6)	25284	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
104620	chr17	81427401	81428650	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	23163	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
121608	chr19	47417201	47417400	+	0	NA	exon (NM_001346148, exon 2 of 13)	exon (NM_001346148, exon 2 of 13)	2227	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
128405	chr2	55225771	55226530	+	0	NA	intron (NM_001353787, intron 1 of 9)	AluY|SINE|Alu	-5753	NM_001135592	6233		NM_002954	ENSG00000143947	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80|eS31	ribosomal protein S27a	protein-coding
112721	chr19	7199601	7200030	+	0	NA	intron (NM_001079817, intron 2 of 20)	L2c|LINE|L2	94599	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
124088	chr19	55637551	55638130	+	0	NA	Intergenic	MIR|SINE|MIR	-3162	NM_207115	51157		NM_016202	ENSG00000213015	ZNF580	-	zinc finger protein 580	protein-coding
2182	chr1	8523451	8524100	+	0	NA	intron (NM_012102, intron 8 of 23)	intron (NM_012102, intron 8 of 23)	-28862	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
122923	chr19	50662221	50662480	+	0	NA	exon (NM_016148, exon 24 of 24)	exon (NM_016148, exon 24 of 24)	12905	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
141424	chr2	240986871	240987030	+	0	NA	intron (NM_001351305, intron 28 of 31)	intron (NM_001351305, intron 28 of 31)	-11668	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
79411	chr16	678901	681380	+	0	NA	promoter-TSS (NM_005861)	promoter-TSS (NM_005861)	-270	NM_005861	10273		NM_005861	ENSG00000103266	STUB1	CHIP|HSPABP2|NY-CO-7|SCA48|SCAR16|SDCCAG7|UBOX1	STIP1 homology and U-box containing protein 1	protein-coding
125714	chr2	20450351	20451400	+	0	NA	Intergenic	Intergenic	3801	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
196715	chr6	45001621	45002650	+	0	NA	intron (NM_001350327, intron 5 of 9)	intron (NM_001350327, intron 5 of 9)	195635	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
87959	chr16	79722671	79723030	+	0	NA	intron (NR_104663, intron 5 of 5)	(TGG)n|Simple_repeat|Simple_repeat	-47621	NR_104660	101928248		NR_104660	ENSG00000260876	LINC01229	-	long intergenic non-protein coding RNA 1229	ncRNA
99322	chr17	49835651	49836030	+	0	NA	TTS (NM_007067)	TTS (NM_007067)	-10046	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
44916	chr11	115379671	115379830	+	0	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	-17006	NR_135102	105369507		NR_135102	ENSG00000256315	CADM1-AS1	-	CADM1 antisense RNA 1	ncRNA
89546	chr16	89204771	89205130	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3272	NM_001384764	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
39221	chr11	57640301	57640500	+	0	NA	promoter-TSS (NR_029673)	promoter-TSS (NR_029673)	-798	NR_029673	406919		NR_029673	ENSG00000208009	MIR130A	MIRN130A|miRNA130A|mir-130a	microRNA 130a	ncRNA
70534	chr14	102506101	102506500	+	0	NA	3' UTR (NM_152326, exon 4 of 4)	3' UTR (NM_152326, exon 4 of 4)	3476	NM_152326	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
235662	chrX	48539051	48540980	+	0	NA	intron (NR_145501, intron 1 of 3)	CpG	301	NM_002536	4943		NM_002536	ENSG00000068354	TBC1D25	MG81|OATL1	TBC1 domain family member 25	protein-coding
170191	chr3	183825121	183826580	+	0	NA	promoter-TSS (NM_024871)	promoter-TSS (NM_024871)	-273	NM_024871	79929		NM_024871	ENSG00000180834	MAP6D1	MAPO6D1|SL21	MAP6 domain containing 1	protein-coding
218274	chr8	42270701	42272030	+	0	NA	promoter-TSS (NR_040009)	promoter-TSS (NR_040009)	63	NM_001242778	3551		NM_001556	ENSG00000104365	IKBKB	IKK-2|IKK-beta|IKK2|IKKB|IMD15|IMD15A|IMD15B|NFKBIKB	inhibitor of nuclear factor kappa B kinase subunit beta	protein-coding
114892	chr19	13905501	13907030	+	0	NA	promoter-TSS (NM_001345848)	promoter-TSS (NM_001345848)	64	NM_017721	54862		NM_017721	ENSG00000132024	CC2D1A	Aki-1|FREUD-1|Freud-1/Aki1|Lgd2|MRT3|TAPE	coiled-coil and C2 domain containing 1A	protein-coding
19662	chr1	180507901	180508100	+	0	NA	Intergenic	MER99|DNA|hAT?	-5423	NM_032360	84320		NM_032360	ENSG00000230124	ACBD6	NEDPM	acyl-CoA binding domain containing 6	protein-coding
154812	chr22	37019021	37020250	+	0	NA	promoter-TSS (NM_001013436)	promoter-TSS (NM_001013436)	-107	NM_001013436	4357		NM_021126	ENSG00000128309	MPST	MST|TST2|TUM1	mercaptopyruvate sulfurtransferase	protein-coding
64106	chr14	22777521	22777780	+	0	NA	intron (NM_003982, intron 4 of 9)	intron (NM_003982, intron 4 of 9)	10962	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
4862	chr1	23742871	23744550	+	0	NA	intron (NM_003198, intron 1 of 10)	CpG	344	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
53842	chr12	69584621	69586450	+	0	NA	promoter-TSS (NM_001198842)	promoter-TSS (NM_001198842)	76	NM_006431	10576		NM_006431	ENSG00000166226	CCT2	99D8.1|CCT-beta|CCTB|HEL-S-100n|PRO1633|TCP-1-beta	chaperonin containing TCP1 subunit 2	protein-coding
7248	chr1	32350021	32350300	+	0	NA	Intergenic	L2a|LINE|L2	12083	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
132674	chr2	108779971	108780130	+	0	NA	intron (NM_006267, intron 25 of 28)	intron (NM_006267, intron 25 of 28)	-6700	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
101221	chr17	65593851	65593950	+	0	NA	Intergenic	Intergenic	-32252	NM_004655	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
152656	chr22	21569271	21569600	+	0	NA	intron (NR_046082, intron 1 of 3)	intron (NR_046082, intron 1 of 3)	1721	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
17657	chr1	157496021	157496330	+	0	NA	Intergenic	Intergenic	56340	NM_031281	83416		NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
1113	chr1	2054871	2055030	+	0	NA	intron (NM_002744, intron 1 of 17)	AluY|SINE|Alu	4539	NM_002744	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
71957	chr15	23566201	23566550	+	0	NA	exon (NM_005664, exon 1 of 1)	exon (NM_005664, exon 1 of 1)	701	NM_005664	7681		NM_005664	ENSG00000179455	MKRN3	CPPB2|D15S9|RNF63|ZFP127|ZNF127	makorin ring finger protein 3	protein-coding
94667	chr17	30339971	30340550	+	0	NA	Intergenic	Intergenic	-6203	NM_206832	388364		NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
185829	chr5	132458401	132459600	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	31773	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
93817	chr17	20700501	20700900	+	0	NA	Intergenic	L1ME3|LINE|L1	-11746	NR_073509	100287072		NR_073509		LOC100287072	-	ribosomal protein S6 kinase B1 pseudogene	pseudo
225730	chr9	37026071	37026700	+	0	NA	intron (NR_103999, intron 1 of 8)	CpG	7883	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
109657	chr19	1011171	1011680	+	0	NA	exon (NM_001033026, exon 9 of 11)	exon (NM_001033026, exon 9 of 11)	9698	NM_001033026	91304		NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
167242	chr3	128491521	128491900	+	0	NA	intron (NR_125398, intron 2 of 2)	CpG-20230	1491	NM_032638	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
86116	chr16	57665601	57666000	+	0	NA	TTS (NM_001290144)	TTS (NM_001290144)	-2506	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
126204	chr2	26783501	26784100	+	0	NA	Intergenic	L1MB3|LINE|L1	-2215	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
107459	chr18	46624171	46624480	+	0	NA	intron (NM_144612, intron 4 of 39)	intron (NM_144612, intron 4 of 39)	32895	NM_001384474	125336		NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology PLAT domains 1	protein-coding
213718	chr7	140266801	140267000	+	0	NA	Intergenic	LTR78B|LTR|ERV1	89639	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
237457	chrX	119749721	119750780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8338	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
116251	chr19	17604771	17604930	+	0	NA	3' UTR (NM_001080421, exon 42 of 42)	3' UTR (NM_001080421, exon 42 of 42)	49201	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
195205	chr6	36117621	36117880	+	0	NA	Intergenic	MIR|SINE|MIR	-12763	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
152906	chr22	22754821	22755480	+	0	NA	Intergenic	Intergenic	-67626	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
14327	chr1	143902101	143902300	+	0	NA	TTS (NM_001355409)	TTS (NM_001355409)	2450	NR_160913	338391		NR_160913		H2BP2	HIST2H2BB	H2B histone pseudogene 2	pseudo
216562	chr8	21908171	21908930	+	0	NA	TTS (NM_003974)	TTS (NM_003974)	5140	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
183189	chr5	75690801	75691000	+	0	NA	intron (NM_001099271, intron 7 of 11)	intron (NM_001099271, intron 7 of 11)	21555	NM_152408	134359		NM_152408	ENSG00000152359	POC5	C5orf37	POC5 centriolar protein	protein-coding
182427	chr5	61534501	61535000	+	0	NA	intron (NM_020928, intron 9 of 13)	intron (NM_020928, intron 9 of 13)	-103010	NR_161251	285668		NR_126523	ENSG00000178722	LINC03122	C5orf64|LINC03119	long intergenic non-protein coding RNA 3122	ncRNA
219028	chr8	65587121	65587380	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-24584	NR_033893	286186		NR_033893	ENSG00000254081	LINC01299	-	long intergenic non-protein coding RNA 1299	ncRNA
57130	chr12	121218701	121219500	+	0	NA	intron (NM_001261398, intron 2 of 10)	intron (NM_001261398, intron 2 of 10)	8971	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
227293	chr9	89405871	89407180	+	0	NA	intron (NM_001371201, intron 2 of 18)	intron (NM_001371201, intron 2 of 18)	73365	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
231041	chr9	129617021	129617550	+	0	NA	intron (NM_199350, intron 3 of 6)	intron (NM_199350, intron 3 of 6)	-2928	NM_001286797	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
109907	chr19	1286001	1287000	+	0	NA	intron (NM_001405, intron 1 of 3)	CpG	627	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
178439	chr4	147843251	147843430	+	0	NA	intron (NM_024605, intron 3 of 22)	L2b|LINE|L2	60745	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
226007	chr9	41363651	41363750	+	0	NA	intron (NR_148348, intron 1 of 2)	intron (NR_148348, intron 1 of 2)	4838	NR_148348	107984035		NR_148348		LOC107984035	-	uncharacterized LOC107984035	ncRNA
43080	chr11	74739521	74740100	+	0	NA	Intergenic	MIR3|SINE|MIR	-8384	NM_015424	25884		NM_015424	ENSG00000054938	CHRDL2	BNF1|CHL2	chordin like 2	protein-coding
82826	chr16	21493551	21493850	+	0	NA	intron (NR_027155, intron 1 of 28)	intron (NR_027155, intron 1 of 28)	-7826	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
31093	chr10	89251121	89253080	+	0	NA	promoter-TSS (NM_001127605)	promoter-TSS (NM_001127605)	-61	NM_001288979	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
222322	chr8	133507171	133508250	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	64177	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
150528	chr21	42971521	42971980	+	0	NA	Intergenic	MER41B|LTR|ERV1	-2760	NM_001286258	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
208321	chr7	66129151	66129450	+	0	NA	intron (NM_001142414, intron 2 of 4)	AluYe5|SINE|Alu	14453	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
56895	chr12	120325371	120326350	+	0	NA	intron (NM_000928, intron 2 of 3)	intron (NM_000928, intron 2 of 3)	1919	NM_000928	5319		NM_000928	ENSG00000170890	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2 group IB	protein-coding
56401	chr12	113217271	113217780	+	0	NA	intron (NM_138451, intron 1 of 2)	AluSz6|SINE|Alu	3569	NM_001330452	115811		NM_138451	ENSG00000166578	IQCD	4933433C09Rik|CFAP84|DRC10	IQ motif containing D	protein-coding
111374	chr19	3705901	3706600	+	0	NA	Intergenic	Intergenic	-2134	NM_001267560	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
164593	chr3	66211971	66212130	+	0	NA	intron (NM_173471, intron 1 of 10)	MER44A|DNA|TcMar-Tigger	-8692	NM_001350993	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
140657	chr2	233857021	233857780	+	0	NA	Intergenic	LTR2|LTR|ERV1	-2834	NM_001282963	55355		NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
6192	chr1	27446501	27446700	+	0	NA	intron (NM_006990, intron 1 of 8)	AluJb|SINE|Alu	43567	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
71435	chr14	105651601	105651930	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	11597	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
94378	chr17	28930971	28931130	+	0	NA	intron (NM_020889, intron 2 of 8)	AluJb|SINE|Alu	4775	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
155448	chr22	38470101	38470680	+	0	NA	intron (NM_006855, intron 1 of 4)	intron (NM_006855, intron 1 of 4)	2294	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
9914	chr1	54413221	54413880	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-7156	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
139002	chr2	218356471	218357200	+	0	NA	promoter-TSS (NM_198559)	promoter-TSS (NM_198559)	-22	NM_198559	375307		NM_198559	ENSG00000158428	CATIP	C2orf62	ciliogenesis associated TTC17 interacting protein	protein-coding
93034	chr17	17282421	17283350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1582	NM_001316354	8533		NM_003653	ENSG00000141030	COPS3	CSN3|SGN3	COP9 signalosome subunit 3	protein-coding
117870	chr19	32579121	32579550	+	0	NA	Intergenic	L1MB3|LINE|L1	-1855	NM_004708	9141		NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
162297	chr3	47412051	47412500	+	0	NA	intron (NM_001304482, intron 21 of 23)	intron (NM_001304482, intron 21 of 23)	31254	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
56860	chr12	120262071	120263530	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	2930	NM_002859	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
96743	chr17	41687801	41690140	+	0	NA	promoter-TSS (NM_005801)	promoter-TSS (NM_005801)	85	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
224542	chr9	19266901	19267400	+	0	NA	intron (NM_001330640, intron 1 of 32)	L1M1|LINE|L1	36457	NR_073201	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
117345	chr19	19533921	19534230	+	0	NA	intron (NM_198537, intron 3 of 6)	intron (NM_198537, intron 3 of 6)	-4190	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
216475	chr8	19754771	19755280	+	0	NA	intron (NM_001354488, intron 1 of 9)	intron (NM_001354488, intron 1 of 9)	2058	NM_001354490	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
21701	chr1	206733871	206734030	+	0	NA	3' UTR (NM_004759, exon 10 of 10)	3' UTR (NM_004759, exon 10 of 10)	36653	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
45686	chr11	119050821	119051300	+	0	NA	exon (NM_001130991, exon 14 of 26).2	exon (NM_001130991, exon 14 of 26).2	6145	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
140907	chr2	237696421	237696950	+	0	NA	intron (NM_001137551, intron 1 of 11)	MIRb|SINE|MIR	4480	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
72403	chr15	31397821	31398080	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	71115	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
25709	chr10	8992621	8992990	+	0	NA	Intergenic	L1MD1|LINE|L1	94816	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
88340	chr16	84525151	84525250	+	0	NA	Intergenic	Intergenic	-20541	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
194091	chr6	31899801	31900650	+	0	NA	promoter-TSS (NM_001178063).7	promoter-TSS (NM_001178063).7	-774	NM_001178063	717		NM_000063	ENSG00000166278	C2	ARMD14|CO2	complement C2	protein-coding
37833	chr11	33256671	33259230	+	0	NA	promoter-TSS (NM_001278162)	promoter-TSS (NM_001278162)	-381	NM_001278162	10114		NM_005734	ENSG00000110422	HIPK3	DYRK6|FIST3|PKY|YAK1	homeodomain interacting protein kinase 3	protein-coding
48859	chr12	12415401	12415800	+	0	NA	intron (NM_058169, intron 2 of 3)	L1PA6|LINE|L1	58522	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
184859	chr5	112160071	112161500	+	0	NA	promoter-TSS (NR_002922)	promoter-TSS (NR_002922)	259	NR_015370	114915		NM_053000		EPB41L4A-AS1	C5orf26|NCRNA00219|TIGA1	EPB41L4A antisense RNA 1	ncRNA
223220	chr8	143596901	143599300	+	0	NA	promoter-TSS (NM_001960)	promoter-TSS (NM_001960)	269	NM_032862	84948		NM_032862	ENSG00000179886	TIGD5	-	tigger transposable element derived 5	protein-coding
217454	chr8	28699371	28699530	+	0	NA	non-coding (NR_126027, exon 2 of 3)	non-coding (NR_126027, exon 2 of 3)	2014	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
227401	chr9	89531521	89531880	+	0	NA	Intergenic	Intergenic	-33587	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
13721	chr1	116795171	116795530	+	0	NA	Intergenic	Intergenic	40920	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
128742	chr2	61907951	61908050	+	0	NA	intron (NM_152516, intron 1 of 2)	LTR84b|LTR|ERVL	2358	NM_152516	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
102741	chr17	76256271	76258000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8213	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
77001	chr15	78437451	78439150	+	0	NA	promoter-TSS (NM_001320943)	promoter-TSS (NM_001320943)	84	NM_001320943	3658		NM_004136	ENSG00000136381	IREB2	ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA	iron responsive element binding protein 2	protein-coding
93947	chr17	21375921	21376380	+	0	NA	promoter-TSS (NM_021012)	promoter-TSS (NM_021012)	-207	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
140582	chr2	233359001	233359380	+	0	NA	intron (NM_152879, intron 1 of 29)	MIRb|SINE|MIR	4696	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
180357	chr5	6765671	6766080	+	0	NA	Intergenic	Intergenic	-30005	NR_146281	109729133		NR_146281	ENSG00000251365	LINC02236	-	long intergenic non-protein coding RNA 2236	ncRNA
219202	chr8	66653251	66654030	+	0	NA	intron (NM_025054, intron 1 of 2)	intron (NM_025054, intron 1 of 2)	13591	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
114640	chr19	13010251	13010930	+	0	NA	intron (NM_001365902, intron 1 of 10)	CpG	-13382	NM_001271044	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
176495	chr4	93594451	93594650	+	0	NA	intron (NM_001286838, intron 12 of 14)	L1PA3|LINE|L1	-234203	NM_005172	474		NM_005172	ENSG00000172238	ATOH1	ATH1|DFNA89|HATH1|MATH-1|bHLHa14	atonal bHLH transcription factor 1	protein-coding
129564	chr2	69914101	69915800	+	0	NA	promoter-TSS (NM_001202513)	promoter-TSS (NM_001202513)	-91	NM_001202514	4084		NM_002357	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
56200	chr12	111450521	111450850	+	0	NA	3' UTR (NM_001291424, exon 7 of 7)	3' UTR (NM_001291424, exon 7 of 7)	15823	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
173326	chr4	7639071	7639430	+	0	NA	intron (NM_020777, intron 4 of 26)	MLT1D|LTR|ERVL-MaLR	-114840	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
214146	chr7	144358521	144358930	+	0	NA	intron (NM_005435, intron 1 of 14)	intron (NM_005435, intron 1 of 14)	-3007	NR_126023	101928492		NR_126023		OR2A1-AS1	-	OR2A1 antisense RNA 1	ncRNA
36163	chr11	3154201	3154600	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	10910	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
133891	chr2	130153001	130153900	+	0	NA	exon (NM_017751, exon 17 of 19)	exon (NM_017751, exon 17 of 19)	-8338	NM_001258307	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
126589	chr2	28766771	28767430	+	0	NA	intron (NM_206876, intron 2 of 8)	Cheshire|DNA|hAT-Charlie	15270	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
28520	chr10	50400271	50400430	+	0	NA	intron (NM_147156, intron 6 of 10)	MIR|SINE|MIR	-148834	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
157969	chr22	49818771	49819000	+	0	NA	intron (NM_001349940, intron 1 of 12)	AluY|SINE|Alu	5446	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
25651	chr10	8326471	8327330	+	0	NA	Intergenic	Intergenic	-58595	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
21659	chr1	206689971	206691250	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	5705	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
92988	chr17	17153851	17154180	+	0	NA	intron (NM_015134, intron 12 of 22)	L2c|LINE|L2	52318	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
154916	chr22	37199101	37201500	+	0	NA	promoter-TSS (NM_001365878)	promoter-TSS (NM_001365878)	-877	NM_001365878	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
114996	chr19	14051701	14051900	+	0	NA	intron (NM_004843, intron 12 of 13)	intron (NM_004843, intron 12 of 13)	5838	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
158056	chr22	49949871	49950030	+	0	NA	Intergenic	Intergenic	-10822	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
220452	chr8	100384071	100384230	+	0	NA	Intergenic	AluJr4|SINE|Alu	1387	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
3976	chr1	18875001	18875480	+	0	NA	intron (NM_170726, intron 13 of 15)	intron (NM_170726, intron 13 of 15)	8035	NR_039844	100616120		NR_039844	ENSG00000265606	MIR4695	-	microRNA 4695	ncRNA
918	chr1	1703061	1703700	+	0	NA	intron (NR_132739, intron 18 of 19)	intron (NR_132739, intron 18 of 19)	3441	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
138938	chr2	218245201	218245550	+	0	NA	intron (NM_152862, intron 7 of 10)	intron (NM_152862, intron 7 of 10)	-14121	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
16507	chr1	154878171	154878830	+	0	NA	Intergenic	Intergenic	-8219	NM_002249	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
126660	chr2	29005601	29006250	+	0	NA	intron (NM_199280, intron 6 of 19)	(GT)n|Simple_repeat|Simple_repeat	24627	NM_001321538	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
13883	chr1	119139251	119141430	+	0	NA	promoter-TSS (NR_125977)	promoter-TSS (NR_125977)	-56	NR_125976	101929147		NR_125974	ENSG00000231365	WARS2-AS1	-	WARS2 antisense RNA 1	ncRNA
201379	chr6	144920471	144920830	+	0	NA	Intergenic	Intergenic	337502	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
111241	chr19	3518901	3519680	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	-3666	NM_001136197	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
131377	chr2	96245721	96245980	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	20147	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
109582	chr19	906621	906900	+	0	NA	intron (NM_138774, intron 1 of 7)	intron (NM_138774, intron 1 of 7)	6459	NM_138774	91300		NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
89758	chr16	89452251	89453050	+	0	NA	intron (NR_110932, intron 2 of 2)	AluSx1|SINE|Alu	21732	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
139228	chr2	219296751	219297450	+	0	NA	exon (NM_001199764, exon 15 of 23)	exon (NM_001199764, exon 15 of 23)	-2900	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
226166	chr9	63881411	63881630	+	0	NA	Intergenic	Intergenic	-21886	NR_033907	642236		NR_033907		FRG1JP	-	FSHD region gene 1 family member J, pseudogene	pseudo
67424	chr14	70539401	70539800	+	0	NA	Intergenic	MER11D|LTR|ERVK	-4596	NM_003814	8748		NM_003814	ENSG00000134007	ADAM20	-	ADAM metallopeptidase domain 20	protein-coding
92239	chr17	7910421	7911050	+	0	NA	intron (NM_001005271, intron 38 of 39)	intron (NM_001005271, intron 38 of 39)	4612	NR_003000	677763		NR_003000	ENSG00000252835	SCARNA21	ACA68|SCARNA21A	small Cajal body-specific RNA 21	ncRNA
30735	chr10	84147801	84148430	+	0	NA	intron (NM_014394, intron 5 of 8)	intron (NM_014394, intron 5 of 8)	8606	NM_014394	27069		NM_014394	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
72136	chr15	29003851	29004230	+	0	NA	intron (NM_001353793, intron 2 of 12).2	intron (NM_001353793, intron 2 of 12).2	8513	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
86776	chr16	67722401	67722950	+	0	NA	TTS (NM_020850)	TTS (NM_020850)	-3359	NM_001243650	81577		NM_030819	ENSG00000141098	GFOD2	-	Gfo/Idh/MocA-like oxidoreductase domain containing 2	protein-coding
166398	chr3	113541101	113541500	+	0	NA	intron (NM_001322297, intron 1 of 24)	AluSx1|SINE|Alu	8745	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
98637	chr17	47813021	47813480	+	0	NA	intron (NM_145798, intron 16 of 22)	intron (NM_145798, intron 16 of 22)	8544	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
71532	chr14	106185801	106186180	+	0	NA	Intergenic	Intergenic	-101684	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
179139	chr4	169492671	169493140	+	0	NA	intron (NM_001374421, intron 19 of 30)	L1P4a|LINE|L1	119678	NM_001199400	4750		NM_012224	ENSG00000137601	NEK1	ALS24|NY-REN-55|OFD2|SRPS2|SRPS2A|SRTD6	NIMA related kinase 1	protein-coding
236051	chrX	56232201	56232930	+	0	NA	promoter-TSS (NM_001324100)	promoter-TSS (NM_001324100)	209	NR_136705	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
152802	chr22	21844671	21845230	+	0	NA	intron (NM_138957, intron 1 of 7)	AluY|SINE|Alu	22695	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
114968	chr19	14009371	14009730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3230	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
11486	chr1	90724671	90725150	+	0	NA	Intergenic	Intergenic	-7608	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
54107	chr12	76125451	76125750	+	0	NA	Intergenic	AluY|SINE|Alu	-40915	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
40228	chr11	63560651	63561450	+	0	NA	intron (NM_017878, intron 1 of 3)	intron (NM_017878, intron 1 of 3)	2329	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
129105	chr2	65127171	65127330	+	0	NA	intron (NM_004161, intron 1 of 5)	intron (NM_004161, intron 1 of 5)	2856	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
23569	chr1	229433651	229434380	+	0	NA	promoter-TSS (NM_001100)	promoter-TSS (NM_001100)	79	NM_001100	58		NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|CMYP2A|CMYP2B|CMYP2C|MPFD|NEM1|NEM2|NEM3|SHPM	actin alpha 1, skeletal muscle	protein-coding
73191	chr15	41507921	41508180	+	0	NA	intron (NM_206961, intron 8 of 18)	intron (NM_206961, intron 8 of 18)	5777	NM_002344	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
136732	chr2	181236051	181236350	+	0	NA	intron (NR_130784, intron 2 of 4)	intron (NR_130784, intron 2 of 4)	69452	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
105900	chr18	3322871	3323230	+	0	NA	Intergenic	Helitron2Na_Mam|RC?|Helitron?	27509	NR_146506	105371964		NR_146506	ENSG00000259256	LINC01895	-	long intergenic non-protein coding RNA 1895	ncRNA
34824	chr11	294901	295250	+	0	NA	3' UTR (NM_025092, exon 14 of 14)	3' UTR (NM_025092, exon 14 of 14)	4451	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
226198	chr9	65259921	65260180	+	0	NA	Intergenic	Intergenic	25159	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
131520	chr2	96556451	96557380	+	0	NA	Intergenic	Intergenic	19036	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
73898	chr15	50679001	50679200	+	0	NA	intron (NR_149152, intron 1 of 38)	AluSc|SINE|Alu	7697	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
178294	chr4	145125251	145125350	+	0	NA	intron (NM_002940, intron 17 of 17)	AluSx1|SINE|Alu	-26759	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
79210	chr16	354901	355980	+	0	NA	Intergenic	Intergenic	-2717	NM_181050	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
28671	chr10	60573421	60573780	+	0	NA	promoter-TSS (NM_001204404)	promoter-TSS (NM_001204404)	-644	NM_001204404	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
5247	chr1	25018651	25018750	+	0	NA	Intergenic	Intergenic	-4803	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
210171	chr7	98400471	98401850	+	0	NA	promoter-TSS (NM_018842)	promoter-TSS (NM_018842)	-70	NM_018842	55971		NM_018842	ENSG00000006453	BAIAP2L1	IRTKS	BAR/IMD domain containing adaptor protein 2 like 1	protein-coding
209048	chr7	74666701	74667230	+	0	NA	intron (NM_001163636, intron 1 of 33)	AluY|SINE|Alu	9247	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
39420	chr11	60867371	60867730	+	0	NA	promoter-TSS (NM_207341)	promoter-TSS (NM_207341)	8	NM_207341	22917		NM_207341	ENSG00000149506	ZP1	HEL163|OOMD|OOMD1|OZEMA1|ZPB1	zona pellucida glycoprotein 1	protein-coding
230123	chr9	127717121	127717950	+	0	NA	intron (NM_001317037, intron 3 of 13)	intron (NM_001317037, intron 3 of 13)	1456	NM_144965	158248		NM_144965	ENSG00000167094	TTC16	-	tetratricopeptide repeat domain 16	protein-coding
166366	chr3	113007501	113007700	+	0	NA	intron (NR_134969, intron 5 of 5)	intron (NR_134969, intron 5 of 5)	12071	NM_001319111	25871		NM_015412	ENSG00000163608	NEPRO	ANXD3|C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
165834	chr3	105840421	105840680	+	0	NA	intron (NR_135807, intron 3 of 20)	intron (NR_135807, intron 3 of 20)	27041	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
105650	chr18	2516251	2516700	+	0	NA	Intergenic	Intergenic	55030	NM_022840	64863		NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase 4, N6-adenosine	protein-coding
138074	chr2	201880701	201880900	+	0	NA	intron (NM_001261435, intron 12 of 13)	intron (NM_001261435, intron 12 of 13)	74221	NM_001261435	65061		NM_139158	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin dependent kinase 15	protein-coding
201073	chr6	142732851	142732950	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	-95011	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
229737	chr9	124929451	124929750	+	0	NA	intron (NM_002077, intron 4 of 22)	intron (NM_002077, intron 4 of 22)	11483	NM_002077	2800		NM_002077	ENSG00000136935	GOLGA1	golgin-97	golgin A1	protein-coding
205156	chr7	7203721	7204330	+	0	NA	intron (NM_020156, intron 1 of 3)	L1MB3|LINE|L1	21481	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
23738	chr1	232575201	232575630	+	0	NA	intron (NM_001377488, intron 1 of 21)	intron (NM_001377488, intron 1 of 21)	54718	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
15963	chr1	151853551	151853750	+	0	NA	promoter-TSS (NM_182578)	promoter-TSS (NM_182578)	62	NM_182578	284486		NM_182578	ENSG00000196407	THEM5	ACOT15	thioesterase superfamily member 5	protein-coding
96294	chr17	39946971	39947130	+	0	NA	Intergenic	Intergenic	5576	NM_001195545	100505591		NM_001195545	ENSG00000204913	LRRC3C	-	leucine rich repeat containing 3C	protein-coding
112677	chr19	7028101	7028930	+	0	NA	Intergenic	AluSz|SINE|Alu	-2068	NM_001136507	284428		NM_001136507	ENSG00000237247	MBD3L5	-	methyl-CpG binding domain protein 3 like 5	protein-coding
53912	chr12	71655251	71655750	+	0	NA	intron (NM_144982, intron 2 of 34)	L1ME1|LINE|L1	8348	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
61581	chr13	72754321	72754580	+	0	NA	3' UTR (NM_001322349, exon 22 of 22)	3' UTR (NM_001322349, exon 22 of 22)	26527	NM_024808	79866		NM_024808	ENSG00000136122	BORA	C13orf34	BORA aurora kinase A activator	protein-coding
65589	chr14	52123101	52123430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-54206	NM_007361	22795		NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
70255	chr14	101704101	101704780	+	0	NA	Intergenic	MER66B|LTR|ERV1	-25997	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
41178	chr11	65625851	65626800	+	0	NA	intron (NM_032223, intron 20 of 34)	intron (NM_032223, intron 20 of 34)	-9985	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
99573	chr17	50477071	50477230	+	0	NA	Intergenic	AluSx|SINE|Alu	-1650	NR_130911	55316		NM_018346	ENSG00000136444	RSAD1	HemW	radical S-adenosyl methionine domain containing 1	protein-coding
12684	chr1	109470201	109470600	+	0	NA	intron (NM_001040709, intron 2 of 5)	intron (NM_001040709, intron 2 of 5)	3854	NM_001040709	284612		NM_198280	ENSG00000143028	SYPL2	MG29	synaptophysin like 2	protein-coding
108279	chr18	63303601	63304300	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	15819	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
218341	chr8	42893021	42894850	+	0	NA	intron (NM_030954, intron 1 of 6)	intron (NM_030954, intron 1 of 6)	2340	NR_039679	100616115		NR_039679	ENSG00000284062	MIR4469	mir-4469	microRNA 4469	ncRNA
126948	chr2	33594301	33594830	+	0	NA	intron (NM_015475, intron 2 of 7)	(TA)n|Simple_repeat|Simple_repeat	4734	NM_015475	25940		NM_015475	ENSG00000119812	FAM98A	-	family with sequence similarity 98 member A	protein-coding
238277	chrX	149469921	149470180	+	0	NA	Intergenic	Intergenic	35256	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
41871	chr11	67233771	67234330	+	0	NA	intron (NM_012308, intron 12 of 20)	intron (NM_012308, intron 12 of 20)	-5964	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
45879	chr11	119741121	119741750	+	0	NA	Intergenic	CpG	11852	NR_120587	102724301		NR_120587	ENSG00000254854	NECTIN1-DT	-	NECTIN1 divergent transcript	ncRNA
85007	chr16	31491321	31492180	+	0	NA	TTS (NM_003041)	TTS (NM_003041)	8627	NR_130783	6524		NM_003041	ENSG00000140675	SLC5A2	SGLT2	solute carrier family 5 member 2	protein-coding
107325	chr18	45657801	45658300	+	0	NA	intron (NM_001242692, intron 11 of 20)	intron (NM_001242692, intron 11 of 20)	42574	NM_007163	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
1380	chr1	2532671	2532830	+	0	NA	Intergenic	Intergenic	-2487	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
44846	chr11	114103201	114104200	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	40489	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
47310	chr12	1698171	1698330	+	0	NA	intron (NM_001375365, intron 1 of 7).2	intron (NM_001375365, intron 1 of 7).2	7180	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
74547	chr15	60517351	60517650	+	0	NA	intron (NM_134260, intron 4 of 11)	intron (NM_134260, intron 4 of 11)	38322	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
153035	chr22	23251521	23252030	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-10992	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
183265	chr5	76450071	76450530	+	0	NA	intron (NM_006633, intron 1 of 35)	UCON105|Unknown|Unknown	47015	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
64433	chr14	24195021	24196750	+	0	NA	promoter-TSS (NM_006405)	promoter-TSS (NM_006405)	-149	NM_001289006	10548		NM_006405	ENSG00000100926	TM9SF1	HMP70|MP70	transmembrane 9 superfamily member 1	protein-coding
31572	chr10	97329951	97330600	+	0	NA	Intergenic	Intergenic	4454	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
218847	chr8	59921551	59921800	+	0	NA	Intergenic	Intergenic	359725	NM_001321837	767		NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
84222	chr16	29964351	29964900	+	0	NA	intron (NR_161465, intron 3 of 6)	AluSc8|SINE|Alu	2546	NM_001083613	124446		NM_194280	ENSG00000149932	TMEM219	IGFBP-3R|IGFBP3R	transmembrane protein 219	protein-coding
70614	chr14	102799701	102800100	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	22421	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
28869	chr10	62692871	62693030	+	0	NA	Intergenic	AluSz|SINE|Alu	-111770	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
72909	chr15	40353071	40353630	+	0	NA	intron (NM_001145643, intron 2 of 2)	intron (NM_001145643, intron 2 of 2)	2317	NM_001145643	644844		NM_001145643	ENSG00000233041	PHGR1	-	proline, histidine and glycine rich 1	protein-coding
32176	chr10	101571351	101571530	+	0	NA	Intergenic	Intergenic	16817	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
104745	chr17	81676921	81677180	+	0	NA	Intergenic	Intergenic	6663	NM_001329609	339231		NM_001040025	ENSG00000214087	ARL16	-	ADP ribosylation factor like GTPase 16	protein-coding
179267	chr4	176196851	176197150	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-1415	NM_144644	132851		NM_144644	ENSG00000150628	SPATA4	CFAP178|FAP178|SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
37180	chr11	14074021	14074280	+	0	NA	intron (NM_006108, intron 3 of 15)	intron (NM_006108, intron 3 of 15)	111427	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
70775	chr14	103506071	103506230	+	0	NA	Intergenic	L2a|LINE|L2	16680	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
196639	chr6	44278921	44279180	+	0	NA	3' UTR (NM_182539, exon 5 of 5)	3' UTR (NM_182539, exon 5 of 5)	8600	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
161522	chr3	42599851	42601340	+	0	NA	promoter-TSS (NM_001349125)	promoter-TSS (NM_001349125)	-91	NM_005385	4820		NM_005385	ENSG00000114857	NKTR	CypNK|p104	natural killer cell triggering receptor	protein-coding
201346	chr6	144576871	144577230	+	0	NA	intron (NM_007124, intron 49 of 73)	intron (NM_007124, intron 49 of 73)	-6098	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
63920	chr14	21988001	21988280	+	0	NA	Intergenic	Intergenic	-317123	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
166730	chr3	121658321	121658900	+	0	NA	intron (NM_005335, intron 1 of 13)	intron (NM_005335, intron 1 of 13)	2293	NM_005335	3059		NM_005335	ENSG00000180353	HCLS1	CTTNL|HS1|lckBP1|p75	hematopoietic cell-specific Lyn substrate 1	protein-coding
78598	chr15	93087701	93088370	+	0	NA	intron (NM_020211, intron 1 of 3)	intron (NM_020211, intron 1 of 3)	488	NM_001166287	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
169533	chr3	170159771	170160330	+	0	NA	intron (NM_001308116, intron 4 of 14)	L2c|LINE|L2	21683	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
192095	chr6	16694651	16695880	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	64919	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
190393	chr5	179797271	179797650	+	0	NA	TTS (NM_145867)	TTS (NM_145867)	886	NR_031598	100302156		NR_031598	ENSG00000221394	MIR1229	MIRN1229|hsa-mir-1229	microRNA 1229	ncRNA
4108	chr1	19310871	19313430	+	0	NA	promoter-TSS (NM_001287531)	promoter-TSS (NM_001287531)	-4	NM_001320979	8574		NM_003689	ENSG00000053371	AKR7A2	AFAR|AFAR1|AFB1-AR1|AKR7	aldo-keto reductase family 7 member A2	protein-coding
230770	chr9	128909671	128910380	+	0	NA	intron (NM_019594, intron 3 of 3)	intron (NM_019594, intron 3 of 3)	-10957	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
185074	chr5	116573121	116573380	+	0	NA	intron (NM_001300780, intron 1 of 19)	CpG	-1168	NR_147170	105379132		NR_147170	ENSG00000249167	SEMA6A-AS2	-	SEMA6A antisense RNA 2	ncRNA
82763	chr16	21426701	21426900	+	0	NA	Intergenic	MIRb|SINE|MIR	-1422	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
176982	chr4	104966671	104967280	+	0	NA	Intergenic	Intergenic	-178900	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
214179	chr7	145036751	145037130	+	0	NA	Intergenic	Intergenic	-200887	NM_001350895	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
53657	chr12	68366571	68366730	+	0	NA	Intergenic	L2|LINE|L2	-34236	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
203093	chr6	166402051	166402650	+	0	NA	Intergenic	(ATCT)n|Simple_repeat|Simple_repeat	-19410	NR_164831	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
45661	chr11	119018011	119019580	+	0	NA	promoter-TSS (NM_001318488)	promoter-TSS (NM_001318488)	29	NM_001318489	51399		NM_016146	ENSG00000196655	TRAPPC4	CGI-104|HSPC172|NEDESBA|PTD009|SBDN|SYNBINDIN|TRS23	trafficking protein particle complex subunit 4	protein-coding
41669	chr11	66592371	66594180	+	0	NA	promoter-TSS (NM_018219)	promoter-TSS (NM_018219)	90	NM_005125	9973		NM_005125	ENSG00000173992	CCS	-	copper chaperone for superoxide dismutase	protein-coding
176213	chr4	84492771	84492930	+	0	NA	3' UTR (NM_006168, exon 3 of 3)	3' UTR (NM_006168, exon 3 of 3)	6442	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
66704	chr14	64236671	64237050	+	0	NA	intron (NM_001271877, intron 4 of 5)	intron (NM_001271877, intron 4 of 5)	20906	NM_182910	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
147356	chr20	58314451	58315480	+	0	NA	intron (NM_020673, intron 2 of 6)	intron (NM_020673, intron 2 of 6)	5250	NM_020673	57403		NM_020673	ENSG00000124209	RAB22A	-	RAB22A, member RAS oncogene family	protein-coding
156021	chr22	39950721	39951080	+	0	NA	intron (NM_001291826, intron 2 of 6)	intron (NM_001291826, intron 2 of 6)	4083	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
234448	chrX	17535301	17535550	+	0	NA	intron (NR_135631, intron 1 of 1)	intron (NR_135631, intron 1 of 1)	6990	NR_135631	101928389		NR_135631	ENSG00000235834	LOC101928389	-	uncharacterized LOC101928389	ncRNA
220920	chr8	107305101	107305300	+	0	NA	intron (NM_001199859, intron 4 of 8)	intron (NM_001199859, intron 4 of 8)	31315	NM_001314051	284		NM_001146	ENSG00000154188	ANGPT1	AGP1|AGPT|AGPT-1|ANG1|HAE5	angiopoietin 1	protein-coding
195211	chr6	36125751	36126230	+	0	NA	Intergenic	MIRb|SINE|MIR	-4523	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
146020	chr20	46752551	46752900	+	0	NA	Intergenic	Intergenic	43076	NM_030777	81031		NM_030777	ENSG00000197496	SLC2A10	ATORS|ATS|GLUT10	solute carrier family 2 member 10	protein-coding
238026	chrX	135098001	135099500	+	0	NA	promoter-TSS (NM_001348255)	promoter-TSS (NM_001348255)	-38	NM_001348255	644596		NM_001348255	ENSG00000196972	SMIM10L2B	LINC00086|LINC00087|NCRNA00086|NCRNA00087|SMIM10L2A	small integral membrane protein 10 like 2B	protein-coding
1850	chr1	6348601	6349750	+	0	NA	intron (NM_007274, intron 2 of 8)	intron (NM_007274, intron 2 of 8)	9754	NM_181866	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
58445	chr12	132064601	132065800	+	0	NA	intron (NM_015409, intron 48 of 52)	intron (NM_015409, intron 48 of 52)	-19083	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
143513	chr20	31537901	31538380	+	0	NA	intron (NM_178580, intron 2 of 12)	intron (NM_178580, intron 2 of 12)	23698	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
106853	chr18	24053021	24053550	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-37825	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
9663	chr1	52682351	52683080	+	0	NA	Intergenic	Intergenic	15632	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
182969	chr5	71457271	71457630	+	0	NA	intron (NM_018429, intron 1 of 38).3	AluSz|SINE|Alu	1799	NM_018429	55814		NM_018429	ENSG00000145734	BDP1	DFNB112|HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
77873	chr15	88908321	88908780	+	0	NA	intron (NM_001310319, intron 1 of 6)	intron (NM_001310319, intron 1 of 6)	4618	NM_001310321	4240		NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule EGF and factor V/VIII domain containing	protein-coding
13130	chr1	111649271	111649630	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-15344	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
54309	chr12	89474751	89475050	+	0	NA	intron (NM_172240, intron 4 of 11)	L2b|LINE|L2	49896	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
165007	chr3	71376851	71377350	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-72329	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
51567	chr12	52603421	52603880	+	0	NA	Intergenic	Intergenic	-2187	NM_080747	140807		NM_080747	ENSG00000170486	KRT72	CK-72|K6IRS2|K6irs|K72|KRT6|KRT6IRS2	keratin 72	protein-coding
43559	chr11	82996051	82996530	+	0	NA	intron (NM_014488, intron 3 of 5)	MIR3|SINE|MIR	37984	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
84714	chr16	30883701	30883900	+	0	NA	intron (NR_110942, intron 2 of 2)	AluSz|SINE|Alu	8340	NR_110942	101928736		NR_110940	ENSG00000260083	MIR762HG	-	MIR762 host gene	ncRNA
196701	chr6	44928751	44929150	+	0	NA	intron (NM_001350324, intron 10 of 11)	intron (NM_001350324, intron 10 of 11)	268820	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
115755	chr19	16321751	16322230	+	0	NA	Intergenic	Intergenic	-2836	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
148963	chr21	13696671	13697050	+	0	NA	Intergenic	CpG	-26608	NR_146655	110091777		NR_146655		LOC110091777	-	uncharacterized LOC110091777	ncRNA
203399	chr7	10041	10230	+	0	NA	Intergenic	(CTAACC)n|Simple_repeat|Simple_repeat	139303	NR_134325	102723672		NR_134325		LINC03015	-	long intergenic non-protein coding RNA 3015	ncRNA
133397	chr2	118313271	118313630	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-127064	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
150153	chr21	38802701	38802900	+	0	NA	Intergenic	L2c|LINE|L2	-2383	NM_001256295	2114		NM_005239	ENSG00000157557	ETS2	ETS2IT1	ETS proto-oncogene 2, transcription factor	protein-coding
128597	chr2	60964921	60965730	+	0	NA	intron (NM_001322127, intron 6 of 16)	intron (NM_001322127, intron 6 of 16)	51887	NM_001322124	150962		NM_144709	ENSG00000162927	PUS10	CCDC139|DOBI|Hup10	pseudouridine synthase 10	protein-coding
84675	chr16	30761421	30763380	+	0	NA	promoter-TSS (NM_001195620)	promoter-TSS (NM_001195620)	78	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
119832	chr19	41361451	41361700	+	0	NA	intron (NM_030578, intron 2 of 3)	AluSx1|SINE|Alu	-2372	NM_001369864	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
171718	chr3	197921351	197921730	+	0	NA	intron (NM_032263, intron 7 of 11)	intron (NM_032263, intron 7 of 11)	28385	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
87453	chr16	71357571	71357930	+	0	NA	promoter-TSS (NR_027910).2	promoter-TSS (NR_027910).2	-963	NM_007088	794		NM_001740	ENSG00000172137	CALB2	CAB29|CAL2|CR	calbindin 2	protein-coding
125863	chr2	24510651	24510750	+	0	NA	intron (NM_001362954, intron 1 of 23)	intron (NM_001362954, intron 1 of 23)	18823	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
111823	chr19	4508701	4509530	+	0	NA	intron (NM_001367868, intron 5 of 7)	AluY|SINE|Alu	9371	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
108246	chr18	63221051	63221630	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	98429	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
86256	chr16	58433571	58433730	+	0	NA	Intergenic	LTR47B2|LTR|ERVL	-30065	NM_001378342	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
42035	chr11	67436111	67437990	+	0	NA	TTS (NM_001018070)	TTS (NM_001018070)	632	NM_005608	5790		NM_005608	ENSG00000213402	PTPRCAP	CD45-AP|LPAP	protein tyrosine phosphatase receptor type C associated protein	protein-coding
198372	chr6	105460001	105460600	+	0	NA	Intergenic	Intergenic	-57218	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
141262	chr2	239930251	239930550	+	0	NA	intron (NR_136158, intron 7 of 10)	intron (NR_136158, intron 7 of 10)	12694	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
41003	chr11	65415221	65415530	+	0	NA	Intergenic	Intergenic	-7423	NR_028272	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
89278	chr16	88687401	88687600	+	0	NA	promoter-TSS (NM_178310)	promoter-TSS (NM_178310)	-993	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
180965	chr5	35713371	35713630	+	0	NA	intron (NM_024867, intron 20 of 36)	AluSc8|SINE|Alu	95637	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
178788	chr4	153482171	153482330	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	15890	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
187802	chr5	146426971	146427580	+	0	NA	Intergenic	Intergenic	-20058	NM_001382548	10915		NM_006706	ENSG00000113649	TCERG1	CA150|TAF2S|Urn1	transcription elongation regulator 1	protein-coding
2733	chr1	10664751	10664850	+	0	NA	intron (NM_017766, intron 5 of 15)	(CCAT)n|Simple_repeat|Simple_repeat	131846	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
131871	chr2	98712751	98713200	+	0	NA	intron (NM_012214, intron 2 of 15)	AluJb|SINE|Alu	18157	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
17842	chr1	159915151	159915450	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	8434	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
175703	chr4	77095401	77095830	+	0	NA	Intergenic	Intergenic	-19626	NM_006835	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
175954	chr4	81030621	81031600	+	0	NA	5' UTR (NM_001201, exon 1 of 3)	5' UTR (NM_001201, exon 1 of 3)	402	NM_001201	651		NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
218525	chr8	53841251	53841750	+	0	NA	intron (NM_213620, intron 2 of 13)	intron (NM_213620, intron 2 of 13)	1542	NM_213620	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
23820	chr1	234486851	234487200	+	0	NA	Intergenic	Intergenic	-7846	NM_005646	6894		NM_005646	ENSG00000059588	TARBP1	TRM3|TRMT3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
190142	chr5	178106871	178107230	+	0	NA	Intergenic	Intergenic	-6482	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
69184	chr14	92655371	92655930	+	0	NA	intron (NM_024832, intron 6 of 9)	L2a|LINE|L2	79416	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
235812	chrX	49230051	49231180	+	0	NA	intron (NM_001256790, intron 4 of 47)	intron (NM_001256790, intron 4 of 47)	2725	NM_005183	778		NM_005183	ENSG00000102001	CACNA1F	AIED|COD3|COD4|CORDX|CORDX3|CSNB2|CSNB2A|CSNBX2|Cav1.4|Cav1.4alpha1|JM8|JMC8|OA2	calcium voltage-gated channel subunit alpha1 F	protein-coding
90407	chr17	1324371	1324630	+	0	NA	Intergenic	Intergenic	44838	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
11260	chr1	89039251	89039550	+	0	NA	Intergenic	AluSp|SINE|Alu	-16534	NM_001319180	2635		NM_018284	ENSG00000117226	GBP3	-	guanylate binding protein 3	protein-coding
121481	chr19	47115721	47116350	+	0	NA	Intergenic	AluJo|SINE|Alu	-2259	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
154662	chr22	36350321	36350730	+	0	NA	intron (NM_002473, intron 1 of 40)	AluSp|SINE|Alu	37442	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
175604	chr4	75728321	75728980	+	0	NA	intron (NM_003715, intron 1 of 23)	AluSz|SINE|Alu	4073	NM_003715	8615		NM_003715	ENSG00000138768	USO1	P115|TAP|VDP	USO1 vesicle transport factor	protein-coding
180851	chr5	32591671	32592200	+	0	NA	intron (NM_006713, intron 3 of 4)	AluSg7|SINE|Alu	6378	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
75084	chr15	64389101	64389330	+	0	NA	intron (NM_001321924, intron 1 of 12)	intron (NM_001321924, intron 1 of 12)	1379	NM_016213	9325		NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5	thyroid hormone receptor interactor 4	protein-coding
68969	chr14	91428901	91429300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11280	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
185938	chr5	132951051	132951350	+	0	NA	intron (NM_014423, intron 1 of 20)	AluSz6|SINE|Alu	12434	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
190099	chr5	177867951	177868050	+	0	NA	Intergenic	L1MB3|LINE|L1	-7261	NR_003615	728554		NR_003615	ENSG00000291113	LOC728554	-	THO complex 3 pseudogene	pseudo
5726	chr1	26410801	26411380	+	0	NA	intron (NM_024674, intron 1 of 3)	intron (NM_024674, intron 1 of 3)	273	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
18583	chr1	165367321	165367680	+	0	NA	Intergenic	Intergenic	-10785	NM_177398	4009		NM_177398	ENSG00000162761	LMX1A	DFNA7|LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding
102412	chr17	75623351	75623650	+	0	NA	intron (NM_001309242, intron 52 of 62)	AluSx|SINE|Alu	-9934	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
128411	chr2	55235221	55235680	+	0	NA	TTS (NR_039624).3	TTS (NR_039624).3	1286	NR_039624	100616345		NR_039624	ENSG00000283795	MIR4426	-	microRNA 4426	ncRNA
11295	chr1	89269321	89269900	+	0	NA	intron (NM_001134486, intron 1 of 10)	intron (NM_001134486, intron 1 of 10)	3250	NM_001134486	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
107541	chr18	48664321	48664600	+	0	NA	exon (NM_001142397, exon 6 of 13)	exon (NM_001142397, exon 6 of 13)	-6140	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
112858	chr19	7561071	7561230	+	0	NA	intron (NM_006702, intron 33 of 34)	intron (NM_006702, intron 33 of 34)	25433	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
217040	chr8	23260671	23260830	+	0	NA	3' UTR (NM_001317899, exon 10 of 10)	3' UTR (NM_001317899, exon 10 of 10)	14109	NM_001317899	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
133073	chr2	112429101	112429400	+	0	NA	intron (NM_005054, intron 1 of 22).3	AluY|SINE|Alu	4364	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
206013	chr7	26291471	26292260	+	0	NA	promoter-TSS (NM_001318198)	promoter-TSS (NM_001318198)	3	NM_013322	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
149461	chr21	31671821	31672080	+	0	NA	exon (NM_020706, exon 20 of 20)	exon (NM_020706, exon 20 of 20)	12257	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
191144	chr6	4204051	4204150	+	0	NA	Intergenic	L1PA4|LINE|L1	-14071	NR_125874	102724096		NR_125874		LOC102724096	-	uncharacterized LOC102724096	ncRNA
41361	chr11	65970771	65971730	+	0	NA	intron (NM_005146, intron 12 of 19)	intron (NM_005146, intron 12 of 19)	9516	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
45369	chr11	118283701	118284500	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-19564	NM_144765	10205		NM_005797	ENSG00000149573	MPZL2	DFNB111|EVA|EVA1	myelin protein zero like 2	protein-coding
214197	chr7	148559051	148559150	+	0	NA	Intergenic	Tigger9b|DNA|TcMar-Tigger	-31666	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
159791	chr3	16322951	16323250	+	0	NA	non-coding (NR_148219, exon 12 of 12)	non-coding (NR_148219, exon 12 of 12)	57888	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
83233	chr16	23846751	23847130	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	10957	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
119711	chr19	41137071	41137430	+	0	NA	Intergenic	Intergenic	22818	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
173293	chr4	7074771	7074930	+	0	NA	Intergenic	Intergenic	-6786	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
216509	chr8	20273671	20274230	+	0	NA	promoter-TSS (NM_001362884)	promoter-TSS (NM_001362884)	-415	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
28177	chr10	43816051	43816780	+	0	NA	Intergenic	Intergenic	-25998	NR_002726	10151		NM_005758		HNRNPA3P1	D10S102|FBRNP|HNRPA3|HNRPA3P1	heterogeneous nuclear ribonucleoprotein A3 pseudogene 1	pseudo
113021	chr19	7926971	7927200	+	0	NA	promoter-TSS (NM_206833)	promoter-TSS (NM_206833)	-950	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
203520	chr7	728471	728630	+	0	NA	promoter-TSS (NM_001164758)	promoter-TSS (NM_001164758)	-874	NM_001164758	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
53410	chr12	64752951	64753250	+	0	NA	intron (NM_002076, intron 1 of 13)	intron (NM_002076, intron 1 of 13)	6306	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
13844	chr1	117642851	117643250	+	0	NA	Intergenic	L1PBa|LINE|L1	37002	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
169112	chr3	155753071	155753300	+	0	NA	Intergenic	L2c|LINE|L2	-8114	NM_001349251	23007		NM_014996	ENSG00000114805	PLCH1	HPE14|PLC eta 1|PLC-L3|PLCL3	phospholipase C eta 1	protein-coding
197175	chr6	62286251	62286350	+	0	NA	promoter-TSS (NM_001350622)	promoter-TSS (NM_001350622)	-73	NR_146872	202559		NM_152688	ENSG00000112232	KHDRBS2	KHDRBS2-OT|KHDRBS2-OT1|SLM-1|SLM1	KH RNA binding domain containing, signal transduction associated 2	protein-coding
126967	chr2	36245601	36245800	+	0	NA	Intergenic	Intergenic	109870	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
136084	chr2	173354101	173356350	+	0	NA	intron (NM_031942, intron 1 of 9)	CpG	353	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
157587	chr22	45996401	45996830	+	0	NA	Intergenic	Intergenic	-10001	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
149790	chr21	34933701	34934650	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-45476	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
109264	chr19	534651	534750	+	0	NA	intron (NM_004359, intron 1 of 4)	intron (NM_004359, intron 1 of 4)	2940	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
146593	chr20	50114921	50115230	+	0	NA	intron (NM_199203, intron 5 of 7)	AluSx|SINE|Alu	882	NM_001257393	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
59664	chr13	28611071	28612050	+	0	NA	Intergenic	Intergenic	-47570	NM_015932	51371		NM_015932	ENSG00000132963	POMP	C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1	proteasome maturation protein	protein-coding
159460	chr3	14129371	14129730	+	0	NA	exon (NM_024334, exon 2 of 12)	exon (NM_024334, exon 2 of 12)	4498	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
47049	chr12	541401	541850	+	0	NA	intron (NM_173593, intron 3 of 19)	intron (NM_173593, intron 3 of 19)	44861	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
54601	chr12	92538651	92538750	+	0	NA	Intergenic	AluSg7|SINE|Alu	72021	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
127823	chr2	44941271	44942330	+	0	NA	promoter-TSS (NR_103785)	promoter-TSS (NR_103785)	78	NR_103786	100506108		NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA
73697	chr15	45036871	45037830	+	0	NA	intron (NM_003104, intron 1 of 8)	intron (NM_003104, intron 1 of 8)	14155	NR_034039	6652		NM_003104	ENSG00000140263	SORD	HEL-S-95n|HMNR8|RDH|SDH|SORD1|SORDD|XDH	sorbitol dehydrogenase	protein-coding
235731	chrX	48922921	48923180	+	0	NA	3' UTR (NM_017602, exon 9 of 9)	3' UTR (NM_017602, exon 9 of 9)	-4026	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
208406	chr7	66735651	66735950	+	0	NA	intron (NM_001367727, intron 4 of 11)	MSTA|LTR|ERVL-MaLR	-4933	NM_001287062	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
194873	chr6	34637901	34638600	+	0	NA	intron (NM_022758, intron 2 of 3)	intron (NM_022758, intron 2 of 3)	-57904	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
106289	chr18	12750001	12750400	+	0	NA	promoter-TSS (NR_110763)	promoter-TSS (NR_110763)	-778	NR_110763	100996324		NR_110763		LINC01882	-	long intergenic non-protein coding RNA 1882	ncRNA
236287	chrX	66408471	66408630	+	0	NA	Intergenic	Intergenic	207480	NM_001242310	60401		NM_021783	ENSG00000131080	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
117481	chr19	19778701	19778900	+	0	NA	intron (NM_001355194, intron 1 of 2)	intron (NM_001355194, intron 1 of 2)	2226	NM_001355194	7608		NM_001355194	ENSG00000291177	ZNF56P	ZNF56|ZNF742	zinc finger protein 56, pseudogene	pseudo
100461	chr17	61406351	61406650	+	0	NA	intron (NM_005994, intron 6 of 6)	intron (NM_005994, intron 6 of 6)	-5251	NR_160788	388407		NM_203425	ENSG00000187013	LINC02875	C17orf82	long intergenic non-protein coding RNA 2875	ncRNA
23075	chr1	226645021	226645630	+	0	NA	intron (NM_002221, intron 4 of 7)	intron (NM_002221, intron 4 of 7)	29743	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
209067	chr7	74782801	74783380	+	0	NA	intron (NM_000265, intron 6 of 10)	intron (NM_000265, intron 6 of 10)	9128	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
124125	chr19	55671451	55672800	+	0	NA	intron (NM_007279, intron 11 of 11)	AluSg|SINE|Alu	-3070	NM_001321263	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
139069	chr2	218858201	218858680	+	0	NA	Intergenic	Intergenic	-1365	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
193926	chr6	31643451	31643550	+	0	NA	intron (NM_080702, intron 13 of 24).6	AluSc|SINE|Alu	8890	NM_001098534	7917		NM_004639	ENSG00000204463	BAG6	BAG-6|BAT3|D6S52E|G3	BAG cochaperone 6	protein-coding
72672	chr15	38542371	38542780	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	22239	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
180300	chr5	5348101	5348300	+	0	NA	Intergenic	L2a|LINE|L2	-74477	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
58558	chr12	132330851	132330990	+	0	NA	intron (NR_120467, intron 1 of 1)	intron (NR_120467, intron 1 of 1)	1070	NR_120467	101928416		NR_120467	ENSG00000255916	LOC101928416	-	uncharacterized LOC101928416	ncRNA
129282	chr2	68428301	68428500	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	38894	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
39893	chr11	62502901	62503100	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	42664	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
221040	chr8	116729951	116730450	+	0	NA	intron (NM_003756, intron 1 of 7)	MER1B|DNA|hAT-Charlie	25623	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
39922	chr11	62527601	62527800	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	17964	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
129913	chr2	73282521	73282780	+	0	NA	intron (NM_001080410, intron 1 of 16)	AluJb|SINE|Alu	1828	NM_001371389	150726		NM_001080410	ENSG00000163013	FBXO41	FBX41	F-box protein 41	protein-coding
140264	chr2	232308521	232309830	+	0	NA	intron (NR_046476, intron 14 of 20)	HERV16-int|LTR|ERVL	-69576	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
100790	chr17	64022071	64022330	+	0	NA	Intergenic	L1MB3|LINE|L1	-1566	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
184698	chr5	108824951	108825050	+	0	NA	intron (NM_001308028, intron 3 of 17)	MER11C|LTR|ERVK	76052	NM_001308028	2241		NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding
143132	chr20	23668401	23668930	+	0	NA	Intergenic	Intergenic	20373	NM_001899	1472		NM_001899	ENSG00000101441	CST4	-	cystatin S	protein-coding
96467	chr17	40239251	40239750	+	0	NA	intron (NM_133264, intron 1 of 7)	HAL1|LINE|L1	20196	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
114947	chr19	13984351	13984730	+	0	NA	intron (NM_002918, intron 2 of 20)	intron (NM_002918, intron 2 of 20)	21780	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
42258	chr11	68141871	68142500	+	0	NA	Intergenic	MIRc|SINE|MIR	-20797	NM_001376220	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
189417	chr5	172806901	172808230	+	0	NA	Intergenic	Intergenic	-26686	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
212018	chr7	114920471	114921030	+	0	NA	Intergenic	Intergenic	-1404	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
139363	chr2	221465671	221466230	+	0	NA	intron (NM_004438, intron 5 of 17)	intron (NM_004438, intron 5 of 17)	106354	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
112970	chr19	7859101	7859300	+	0	NA	intron (NM_145245, intron 12 of 18)	AluSx|SINE|Alu	15190	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
2902	chr1	11674321	11674580	+	0	NA	TTS (NM_001127325)	TTS (NM_001127325)	6698	NM_006341	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
4031	chr1	18944401	18945380	+	0	NA	intron (NM_001136265, intron 1 of 8)	GA-rich|Low_complexity|Low_complexity	11786	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
68747	chr14	91037151	91037450	+	0	NA	intron (NM_001322228, intron 1 of 15)	intron (NM_001322228, intron 1 of 15)	22824	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
12643	chr1	109240251	109240350	+	0	NA	Intergenic	Intergenic	-9239	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
31776	chr10	98164001	98164300	+	0	NA	intron (NM_001256621, intron 3 of 7)	intron (NM_001256621, intron 3 of 7)	29493	NM_001256619	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
161726	chr3	43998951	43999550	+	0	NA	Intergenic	CpG	-114962	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA
34741	chr10	133780571	133780950	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-153965	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
30078	chr10	73881701	73881900	+	0	NA	Intergenic	Intergenic	-7209	NM_172171	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
190077	chr5	177722721	177723180	+	0	NA	TTS (NM_173663)	TTS (NM_173663)	-50673	NR_026921	202181		NR_026921		SIMC1P1	-	SIMC1 pseudogene 1	pseudo
95220	chr17	35253371	35253830	+	0	NA	intron (NM_144975, intron 1 of 4)	AluJo|SINE|Alu	10528	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
135052	chr2	156364851	156364950	+	0	NA	Intergenic	Intergenic	-22780	NR_147695	440918		NR_147695		FLJ46875	-	uncharacterized LOC440918	ncRNA
81163	chr16	4423221	4423480	+	0	NA	Intergenic	AluSp|SINE|Alu	-2455	NM_001286516	9093		NM_005147	ENSG00000103423	DNAJA3	HCA57|TID1|Tid1-L|Tid1-S|hTID-1	DnaJ heat shock protein family (Hsp40) member A3	protein-coding
55578	chr12	106303201	106305100	+	0	NA	intron (NM_152772, intron 1 of 9)	intron (NM_152772, intron 1 of 9)	1417	NM_152772	255394		NM_152772	ENSG00000166046	TCP11L2	-	t-complex 11 like 2	protein-coding
184666	chr5	107979751	107980450	+	0	NA	intron (NM_001163315, intron 7 of 8)	L3|LINE|CR1	-309163	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
134208	chr2	134608601	134608800	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	110300	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
187619	chr5	142977201	142978100	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-108740	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
187787	chr5	146204851	146205150	+	0	NA	intron (NM_018989, intron 1 of 20)	AluSx|SINE|Alu	1395	NM_018989	54439		NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18|ZC3H20	RNA binding motif protein 27	protein-coding
50486	chr12	47782951	47783050	+	0	NA	TTS (NM_017842)	TTS (NM_017842)	9762	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
94208	chr17	28601171	28601330	+	0	NA	intron (NR_040012, intron 2 of 2)	AluSx|SINE|Alu	2117	NR_040012	100506436		NR_040012		SPAG5-AS1	-	SPAG5 antisense RNA 1	ncRNA
72225	chr15	30195771	30196530	+	0	NA	intron (NR_026771, intron 1 of 2)	CpG	114	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
27478	chr10	32050321	32050600	+	0	NA	intron (NM_004521, intron 1 of 25)	intron (NM_004521, intron 1 of 25)	5965	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
98131	chr17	45896451	45896550	+	0	NA	promoter-TSS (NR_024559)	promoter-TSS (NR_024559)	717	NR_024560	100130148		NR_024560	ENSG00000279685	MAPT-IT1	-	MAPT intronic transcript 1	ncRNA
76380	chr15	74611001	74612930	+	0	NA	intron (NM_003992, intron 1 of 12)	intron (NM_003992, intron 1 of 12)	3593	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
123642	chr19	54674021	54674280	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	11331	NM_001278428	11006		NM_006847	ENSG00000186818	LILRB4	B4|CD85K|ILT-3|ILT3|LIR-5|LIR5	leukocyte immunoglobulin like receptor B4	protein-coding
88019	chr16	81035421	81037080	+	0	NA	promoter-TSS (NM_001300728)	promoter-TSS (NM_001300728)	408	NM_015251	23300		NM_015251	ENSG00000166454	ATMIN	ASCIZ|ZNF822	ATM interactor	protein-coding
141036	chr2	238202371	238204180	+	0	NA	intron (NM_030768, intron 1 of 11)	CpG	420	NM_030768	80895		NM_030768	ENSG00000132323	ILKAP	ILKAP2|ILKAP3|PP2C-DELTA|PP2CD|PPM1O	ILK associated serine/threonine phosphatase	protein-coding
206319	chr7	30288901	30289350	+	0	NA	promoter-TSS (NR_030319)	promoter-TSS (NR_030319)	-669	NR_030319	693133		NR_030319	ENSG00000207771	MIR550A1	MIR550-1|MIRN550-1|hsa-mir-550a-1|mir-550a-1	microRNA 550a-1	ncRNA
136317	chr2	175037471	175037630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-32169	NM_001371513	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
29253	chr10	69108701	69108980	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-15313	NM_001035260	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
157806	chr22	46802821	46803660	+	0	NA	intron (NM_001284305, intron 4 of 12)	intron (NM_001284305, intron 4 of 12)	29313	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
34978	chr11	506801	508180	+	0	NA	promoter-TSS (NM_203387)	promoter-TSS (NM_203387)	-248	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
219185	chr8	66587421	66587680	+	0	NA	intron (NM_001144755, intron 8 of 14)	MIRb|SINE|MIR	25668	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
203377	chr6	170465951	170466330	+	0	NA	Intergenic	Intergenic	87167	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
105607	chr18	710751	710850	+	0	NA	intron (NM_001354065, intron 1 of 14)	MIRb|SINE|MIR	1830	NM_202758	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
235609	chrX	47836321	47837180	+	0	NA	promoter-TSS (NM_001378154)	promoter-TSS (NM_001378154)	-152	NM_001378152	347344		NM_007137	ENSG00000197779	ZNF81	HFZ20|MRX45|dJ54B20.6	zinc finger protein 81	protein-coding
32415	chr10	102463151	102463250	+	0	NA	intron (NM_024789, intron 1 of 9)	AluY|SINE|Alu	1805	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
160524	chr3	30650221	30650480	+	0	NA	exon (NM_003242, exon 3 of 7)	exon (NM_003242, exon 3 of 7)	43749	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
186463	chr5	137887971	137888130	+	0	NA	TTS (NM_006790)	TTS (NM_006790)	-1407	NM_001300921	27039		NM_014386	ENSG00000078795	PKD2L2	TRPP5	polycystin 2 like 2, transient receptor potential cation channel	protein-coding
133379	chr2	118046671	118046830	+	0	NA	Intergenic	Intergenic	-32680	NM_019044	54520		NM_019044	ENSG00000125633	CCDC93	-	coiled-coil domain containing 93	protein-coding
128579	chr2	60906701	60907000	+	0	NA	intron (NM_001291746, intron 4 of 9)	(TG)n|Simple_repeat|Simple_repeat	25276	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
199255	chr6	111846271	111847180	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	26346	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
189591	chr5	175652951	175653880	+	0	NA	Intergenic	Intergenic	-4656	NR_160284	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
98838	chr17	48428971	48429600	+	0	NA	intron (NM_001075099, intron 1 of 12)	intron (NM_001075099, intron 1 of 12)	929	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
214222	chr7	148839951	148840050	+	0	NA	intron (NM_001203248, intron 3 of 19)	intron (NM_001203248, intron 3 of 19)	43485	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
26088	chr10	13161231	13162600	+	0	NA	intron (NM_182751, intron 1 of 19)	(ATTC)n|Simple_repeat|Simple_repeat	357	NM_018518	55388		NM_018518	ENSG00000065328	MCM10	CNA43|DNA43|IMD80|PRO2249	minichromosome maintenance 10 replication initiation factor	protein-coding
99605	chr17	50543371	50543530	+	0	NA	3' UTR (NM_017957, exon 10 of 10)	3' UTR (NM_017957, exon 10 of 10)	-3639	NM_001258373	64847		NM_022827	ENSG00000006282	SPATA20	HEL-S-98|SSP411|Tisp78	spermatogenesis associated 20	protein-coding
165444	chr3	98552801	98553850	+	0	NA	Intergenic	Intergenic	21347	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
25157	chr10	5089971	5090330	+	0	NA	intron (NM_001253908, intron 1 of 8)	L1PA15-16|LINE|L1	-4264	NM_003739	8644		NM_003739	ENSG00000196139	AKR1C3	DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS	aldo-keto reductase family 1 member C3	protein-coding
201891	chr6	151004551	151005050	+	0	NA	intron (NR_146720, intron 21 of 28)	intron (NR_146720, intron 21 of 28)	-2208	NM_001350490	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
60764	chr13	45046951	45047880	+	0	NA	Intergenic	Intergenic	57877	NM_018559	55425		NM_018559	ENSG00000133114	GPALPP1	AD029|KIAA1704|LSR7|bA245H20.2	GPALPP motifs containing 1	protein-coding
235959	chrX	53433851	53434830	+	0	NA	promoter-TSS (NM_004493)	promoter-TSS (NM_004493)	30	NM_004493	3028		NM_004493	ENSG00000072506	HSD17B10	17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1	hydroxysteroid 17-beta dehydrogenase 10	protein-coding
105957	chr18	4106321	4106630	+	0	NA	intron (NM_001242761, intron 2 of 11)	intron (NM_001242761, intron 2 of 11)	144122	NR_102696	101410534		NR_102696		DLGAP1-AS4	-	DLGAP1 antisense RNA 4	ncRNA
229312	chr9	120875401	120876900	+	0	NA	intron (NM_001286840, intron 1 of 14)	intron (NM_001286840, intron 1 of 14)	1038	NM_001009936	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
29773	chr10	72264701	72265200	+	0	NA	Intergenic	Intergenic	-8974	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
21351	chr1	204746601	204747100	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-61112	NM_201630	10446		NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
25359	chr10	6403471	6403630	+	0	NA	intron (NM_001323267, intron 17 of 17)	intron (NM_001323267, intron 17 of 17)	53234	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
142352	chr20	3754171	3754480	+	0	NA	intron (NM_001039140, intron 5 of 5)	intron (NM_001039140, intron 5 of 5)	13428	NM_001258430	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
136811	chr2	181742901	181743180	+	0	NA	Intergenic	Intergenic	-62375	NR_146175	4760		NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|T2D|bHLHa3	neuronal differentiation 1	protein-coding
8289	chr1	40036801	40037000	+	0	NA	Intergenic	Intergenic	-3340	NM_001350479	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
203871	chr7	1471451	1472200	+	0	NA	intron (NM_001080453, intron 44 of 47)	intron (NM_001080453, intron 44 of 47)	-12355	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
155194	chr22	37810101	37810300	+	0	NA	intron (NM_001171690, intron 2 of 9)	intron (NM_001171690, intron 2 of 9)	2266	NM_014291	23464		NM_014291	ENSG00000100116	GCAT	KBL	glycine C-acetyltransferase	protein-coding
115114	chr19	14352401	14352630	+	0	NA	intron (NR_134908, intron 1 of 3)	AluJr|SINE|Alu	11475	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
136536	chr2	177309671	177310680	+	0	NA	intron (NR_026966, intron 8 of 8)	intron (NR_026966, intron 8 of 8)	3707	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
2617	chr1	10173571	10173730	+	0	NA	intron (NM_001105562, intron 25 of 27)	intron (NM_001105562, intron 25 of 27)	-36920	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
220627	chr8	100937471	100937930	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	12871	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
165050	chr3	71441371	71441980	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	100414	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
182587	chr5	65984471	65984630	+	0	NA	intron (NM_001253697, intron 1 of 25)	intron (NM_001253697, intron 1 of 25)	-38977	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
190226	chr5	178243771	178244980	+	0	NA	intron (NM_173465, intron 25 of 28)	intron (NM_173465, intron 25 of 28)	-11553	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
234838	chrX	24470951	24471050	+	0	NA	intron (NM_001142386, intron 1 of 11)	L1PA7|LINE|L1	5714	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
42941	chr11	73528651	73528950	+	0	NA	intron (NM_015159, intron 1 of 7)	intron (NM_015159, intron 1 of 7)	69312	NM_001286050	23201		NM_015159	ENSG00000054965	FAM168A	KIAA0280|TCRP1	family with sequence similarity 168 member A	protein-coding
23493	chr1	228645751	228646080	+	0	NA	TTS (NR_023363).10	TTS (NR_023363).10	243	NR_023368	100169757		NR_023368	ENSG00000200624	RNA5S6	RN5S6	RNA, 5S ribosomal 6	rRNA
61996	chr13	80444201	80444400	+	0	NA	Intergenic	Intergenic	-103174	NM_005842	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
32632	chr10	103681171	103681530	+	0	NA	intron (NM_014631, intron 6 of 13)	intron (NM_014631, intron 6 of 13)	-3135	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
8458	chr1	40707401	40707700	+	0	NA	intron (NM_001142590, intron 2 of 14)	AluJb|SINE|Alu	-1816	NM_001308115	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
100338	chr17	59890201	59891280	+	0	NA	intron (NM_001193610, intron 2 of 7)	intron (NM_001193610, intron 2 of 7)	2203	NM_016261	51174		NM_016261	ENSG00000108423	TUBD1	TUBD	tubulin delta 1	protein-coding
184912	chr5	112913451	112914230	+	0	NA	intron (NM_005669, intron 2 of 4)	MIR3|SINE|MIR	8387	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
188052	chr5	149960201	149961330	+	0	NA	promoter-TSS (NM_000112)	promoter-TSS (NM_000112)	7	NM_000112	1836		NM_000112	ENSG00000155850	SLC26A2	D5S1708|DTD|DTDST|EDM4|MST153|MSTP157	solute carrier family 26 member 2	protein-coding
201397	chr6	145820001	145820830	+	0	NA	intron (NR_038244, intron 1 of 3)	MLT1F2|LTR|ERVL-MaLR	5539	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
131399	chr2	96270071	96270430	+	0	NA	intron (NM_004804, intron 6 of 6)	AluSg|SINE|Alu	4025	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
176778	chr4	102494551	102494650	+	0	NA	intron (NR_136202, intron 1 of 4)	MSTD|LTR|ERVL-MaLR	-6759	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
196382	chr6	43266071	43266230	+	0	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	22669	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
181135	chr5	38193101	38193330	+	0	NA	Intergenic	Intergenic	44735	NR_134272	101929745		NR_134272	ENSG00000248461	LINC02119	-	long intergenic non-protein coding RNA 2119	ncRNA
218896	chr8	60676151	60676250	+	0	NA	Intergenic	L2a|LINE|L2	-2540	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
17211	chr1	156264971	156265350	+	0	NA	intron (NM_001323616, intron 13 of 22)	AluSz6|SINE|Alu	-17043	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
184283	chr5	96803521	96803880	+	0	NA	exon (NM_001040458, exon 2 of 19)	exon (NM_001040458, exon 2 of 19)	4245	NM_001040458	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
143964	chr20	32836001	32836400	+	0	NA	intron (NM_012325, intron 3 of 6)	AluSx3|SINE|Alu	16246	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
171540	chr3	196745251	196745750	+	0	NA	intron (NM_002577, intron 1 of 14)	intron (NM_002577, intron 1 of 14)	5643	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
163318	chr3	50363171	50363930	+	0	NA	3' UTR (NM_001005505, exon 38 of 38)	3' UTR (NM_001005505, exon 38 of 38)	-1813	NR_111914	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
31256	chr10	91990651	91990950	+	0	NA	intron (NR_165098, intron 21 of 38)	intron (NR_165098, intron 21 of 38)	67030	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
218437	chr8	47903351	47903850	+	0	NA	intron (NM_006904, intron 26 of 85)	intron (NM_006904, intron 26 of 85)	56536	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
239134	chrY	11314201	11314400	+	0	NA	Intergenic	Intergenic	1107290	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
150615	chr21	43375221	43375480	+	0	NA	Intergenic	Intergenic	-13001	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
110695	chr19	2287271	2287900	+	0	NA	Intergenic	Intergenic	-5410	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
173688	chr4	15400951	15401900	+	0	NA	intron (NM_001135171, intron 1 of 2)	intron (NM_001135171, intron 1 of 2)	26489	NR_125911	101929095		NR_125911	ENSG00000249252	C1QTNF7-AS1	-	C1QTNF7 antisense RNA 1	ncRNA
170993	chr3	194661471	194662000	+	0	NA	intron (NM_018385, intron 5 of 13)	intron (NM_018385, intron 5 of 13)	10456	NM_018385	55341		NM_018385	ENSG00000041802	LSG1	-	large 60S subunit nuclear export GTPase 1	protein-coding
42778	chr11	72755771	72755930	+	0	NA	intron (NM_006645, intron 5 of 6)	intron (NM_006645, intron 5 of 6)	-3461	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
64798	chr14	34872621	34875630	+	0	NA	promoter-TSS (NR_160776)	promoter-TSS (NR_160776)	-66	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
93769	chr17	20153521	20154000	+	0	NA	intron (NM_001033553, intron 3 of 14)	intron (NM_001033553, intron 3 of 14)	-2312	NM_001033555	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
57914	chr12	123480701	123481300	+	0	NA	intron (NM_001319243, intron 6 of 7)	MLT1K|LTR|ERVL-MaLR	21296	NM_180699	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
150488	chr21	42680401	42680600	+	0	NA	intron (NM_001001580, intron 1 of 13)	intron (NM_001001580, intron 1 of 13)	26748	NM_001001580	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
149338	chr21	29057151	29057930	+	0	NA	intron (NM_006585, intron 14 of 14)	AluJr4|SINE|Alu	16108	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
3018	chr1	12085901	12086300	+	0	NA	intron (NM_001243, intron 2 of 14)	intron (NM_001243, intron 2 of 14)	22723	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
93538	chr17	19048001	19048200	+	0	NA	Intergenic	AluJb|SINE|Alu	-1143	NM_001330148	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
15072	chr1	148456671	148457350	+	0	NA	intron (NR_027468, intron 1 of 4)	intron (NR_027468, intron 1 of 4)	2910	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
83315	chr16	24575601	24576330	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-34240	NM_001351850	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
9846	chr1	54230721	54231800	+	0	NA	intron (NM_145716, intron 14 of 17)	L1MB8|LINE|L1	-5183	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
173415	chr4	8161371	8162180	+	0	NA	Intergenic	Intergenic	-2962	NM_001130084	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
66513	chr14	61719271	61720350	+	0	NA	intron (NR_144368, intron 1 of 2)	intron (NR_144368, intron 1 of 2)	22188	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
105365	chr17	82650221	82650600	+	0	NA	Intergenic	Intergenic	-1966	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
108122	chr18	62327151	62327450	+	0	NA	intron (NM_001270950, intron 1 of 7)	MER34C2|LTR|ERV1	1990	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
122121	chr19	48813451	48813780	+	0	NA	intron (NM_016246, intron 7 of 8)	intron (NM_016246, intron 7 of 8)	-2586	NM_001190	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
18052	chr1	160627021	160627430	+	0	NA	intron (NR_104401, intron 3 of 5)	MIRb|SINE|MIR	19819	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
69143	chr14	92549451	92550430	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	-26294	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
112699	chr19	7078101	7078300	+	0	NA	intron (NM_024341, intron 5 of 7)	L1MB5|LINE|L1	8497	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
152619	chr22	21423621	21424650	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	6764	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
74289	chr15	57713001	57713200	+	0	NA	intron (NM_001285900, intron 14 of 14)	AluJb|SINE|Alu	6386	NM_015532	81488		NM_015532	ENSG00000255529	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	RNA polymerase II subunit M	protein-coding
22268	chr1	212691651	212691950	+	0	NA	intron (NM_018664, intron 2 of 2)	intron (NM_018664, intron 2 of 2)	8040	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
221454	chr8	124371301	124373730	+	0	NA	5' UTR (NM_194291, exon 1 of 7)	5' UTR (NM_194291, exon 1 of 7)	184	NM_194291	157378		NM_194291	ENSG00000164983	TMEM65	-	transmembrane protein 65	protein-coding
211401	chr7	105030801	105031000	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	16695	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
44427	chr11	104549151	104549450	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	60002	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
98720	chr17	48011101	48011700	+	0	NA	Intergenic	Intergenic	-21482	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
94186	chr17	28553751	28554130	+	0	NA	3' UTR (NM_033198, exon 12 of 12)	3' UTR (NM_033198, exon 12 of 12)	-1312	NM_054035	9094		NM_005148	ENSG00000109103	UNC119	CORD24|HRG4|IMD13|POC7|POC7A	unc-119 lipid binding chaperone	protein-coding
6674	chr1	29135421	29135680	+	0	NA	Intergenic	MIRb|SINE|MIR	-11647	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
108297	chr18	63322971	63323530	+	0	NA	Intergenic	Intergenic	-3481	NM_000657	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
50260	chr12	46261771	46262230	+	0	NA	intron (NM_001278387, intron 1 of 17)	MER20|DNA|hAT-Charlie	4516	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
238299	chrX	149491051	149491880	+	0	NA	intron (NM_001166550, intron 6 of 8)	intron (NM_001166550, intron 6 of 8)	13841	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
139110	chr2	218957701	218957900	+	0	NA	Intergenic	Intergenic	-1866	NM_003936	8941		NM_003936	ENSG00000171450	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin dependent kinase 5 regulatory subunit 2	protein-coding
77363	chr15	82812151	82812930	+	0	NA	intron (NM_001080435, intron 1 of 9)	intron (NM_001080435, intron 1 of 9)	2912	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
104469	chr17	81117551	81118050	+	0	NA	TTS (NM_001144888)	TTS (NM_001144888)	7573	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
234467	chrX	17772571	17772730	+	0	NA	Intergenic	Intergenic	35157	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
74938	chr15	63762001	63762400	+	0	NA	intron (NM_003922, intron 3 of 77)	L1MC5|LINE|L1	71748	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
75043	chr15	64155371	64155830	+	0	NA	TTS (NM_000942)	TTS (NM_000942)	3869	NM_024798	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
84503	chr16	30499471	30499830	+	0	NA	intron (NM_002209, intron 17 of 30)	intron (NM_002209, intron 17 of 30)	-4269	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
133346	chr2	113922351	113922650	+	0	NA	intron (NM_005721, intron 3 of 11)	L2c|LINE|L2	-31508	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128546	chr2	60867721	60868380	+	0	NA	intron (NR_033980, intron 1 of 2)	intron (NR_033980, intron 1 of 2)	13264	NR_033980	400957		NR_033980	ENSG00000228414	REL-DT	LINC01185	REL divergent transcript	ncRNA
65247	chr14	49897071	49897580	+	0	NA	TTS (NM_001663)	TTS (NM_001663)	4243	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
18544	chr1	162411871	162412230	+	0	NA	promoter-TSS (NM_053282)	promoter-TSS (NM_053282)	86	NM_053282	117157		NM_053282	ENSG00000198574	SH2D1B	EAT2	SH2 domain containing 1B	protein-coding
195354	chr6	36637601	36637930	+	0	NA	Intergenic	Intergenic	-15253	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
107416	chr18	46182201	46182680	+	0	NA	intron (NM_145055, intron 1 of 4)	intron (NM_145055, intron 1 of 4)	8406	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
140786	chr2	235685001	235685400	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	-167279	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
126355	chr2	27428001	27429420	+	0	NA	promoter-TSS (NM_001321359)	promoter-TSS (NM_001321359)	79	NM_001321362	29959		NM_013392	ENSG00000115216	NRBP1	BCON3|MADM|MUDPNP|NRBP	nuclear receptor binding protein 1	protein-coding
116035	chr19	17185701	17186400	+	0	NA	intron (NM_004145, intron 18 of 39)	intron (NM_004145, intron 18 of 39)	-29307	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
48696	chr12	10599471	10599900	+	0	NA	non-coding (NR_028045, exon 1 of 7)	non-coding (NR_028045, exon 1 of 7)	150	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
91892	chr17	7284471	7285000	+	0	NA	intron (NM_001042, intron 7 of 10)	intron (NM_001042, intron 7 of 10)	3017	NM_001042	6517		NM_001042	ENSG00000181856	SLC2A4	GLUT4	solute carrier family 2 member 4	protein-coding
19000	chr1	169546121	169546640	+	0	NA	intron (NM_000130, intron 11 of 24)	intron (NM_000130, intron 11 of 24)	40101	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
50295	chr12	46385451	46385750	+	0	NA	intron (NR_125381, intron 1 of 2)	L2c|LINE|L2	1493	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
91923	chr17	7321551	7321650	+	0	NA	exon (NM_001005408, exon 18 of 29)	exon (NM_001005408, exon 18 of 29)	-6240	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
10567	chr1	67233921	67234200	+	0	NA	intron (NM_144701, intron 7 of 10)	intron (NM_144701, intron 7 of 10)	67606	NM_144701	149233		NM_144701	ENSG00000162594	IL23R	PSORS7	interleukin 23 receptor	protein-coding
20330	chr1	197761701	197762930	+	0	NA	intron (NM_001300858, intron 2 of 15)	AluYh3|SINE|Alu	13165	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
148514	chr20	64088471	64089130	+	0	NA	intron (NM_001200019, intron 2 of 5)	intron (NM_001200019, intron 2 of 5)	3801	NM_001200019	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
215130	chr7	155377601	155378230	+	0	NA	Intergenic	Intergenic	-4161	NR_147174	100286906		NR_147174		LINC03010	-	long intergenic non-protein coding RNA 3010	ncRNA
49263	chr12	19479601	19480080	+	0	NA	intron (NM_153207, intron 3 of 7)	L1PB2|LINE|L1	39241	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
52338	chr12	54989371	54989930	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-4888	NM_001136030	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
53858	chr12	69900601	69900880	+	0	NA	intron (NM_182530, intron 10 of 24)	intron (NM_182530, intron 10 of 24)	75513	NM_182530	196446		NM_182530	ENSG00000166268	MYRFL	C12orf15|C12orf28|bcm1377	myelin regulatory factor like	protein-coding
115636	chr19	16104671	16105030	+	0	NA	Intergenic	Intergenic	-7039	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
178972	chr4	161521721	161521800	+	0	NA	intron (NM_020116, intron 10 of 15)	AluY|SINE|Alu	-500973	NR_125888	101928052		NR_125888	ENSG00000249419	LOC101928052	-	uncharacterized LOC101928052	ncRNA
2939	chr1	11838271	11838930	+	0	NA	non-coding (NR_046428, exon 22 of 23)	non-coding (NR_046428, exon 22 of 23)	-1719	NR_037806	100379251		NR_037806		NPPA-AS1	NPPA-AS|NPPAAS	NPPA antisense RNA 1	ncRNA
155929	chr22	39627221	39627480	+	0	NA	intron (NM_001003406, intron 4 of 35)	intron (NM_001003406, intron 4 of 35)	56597	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
119442	chr19	40401451	40401950	+	0	NA	intron (NM_020956, intron 5 of 5)	L2a|LINE|L2	-11519	NM_144685	147746		NM_144685	ENSG00000160396	HIPK4	-	homeodomain interacting protein kinase 4	protein-coding
24182	chr1	235889701	235890100	+	0	NA	Intergenic	AluJb|SINE|Alu	-6187	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
71736	chr15	20609371	20609750	+	0	NA	Intergenic	AluSx1|SINE|Alu	47211	NR_027411	729786		NR_027411	ENSG00000181984	GOLGA8CP	GOLGA8C	golgin A8 family member C, pseudogene	pseudo
30103	chr10	73968151	73968850	+	0	NA	Intergenic	Intergenic	-29616	NM_014000	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
223118	chr8	143469201	143469400	+	0	NA	intron (NM_015117, intron 5 of 11)	intron (NM_015117, intron 5 of 11)	36948	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
171273	chr3	195874251	195874550	+	0	NA	intron (NM_005781, intron 9 of 14)	CpG	7995	NR_106887	102465977		NR_106887	ENSG00000276489	MIR6829	hsa-mir-6829	microRNA 6829	ncRNA
70038	chr14	100108221	100108980	+	0	NA	TTS (NR_039601)	TTS (NR_039601)	914	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
141584	chr2	241611801	241612080	+	0	NA	intron (NM_015963, intron 2 of 5)	AluJb|SINE|Alu	5561	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
109786	chr19	1145421	1146200	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	-13589	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
86572	chr16	67229321	67229580	+	0	NA	TTS (NR_134524)	TTS (NR_134524)	2320	NM_014187	29100		NM_014187	ENSG00000168701	TMEM208	HSPC171|SND2|hSND2	transmembrane protein 208	protein-coding
28379	chr10	47301801	47302000	+	0	NA	intron (NM_004962, intron 1 of 2)	intron (NM_004962, intron 1 of 2)	1703	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
182806	chr5	68894801	68895000	+	0	NA	Intergenic	Intergenic	135027	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
179248	chr4	174423321	174423650	+	0	NA	promoter-TSS (NR_036236)	promoter-TSS (NR_036236)	-310	NR_036236	100423042		NR_036236	ENSG00000265846	MIR4276	-	microRNA 4276	ncRNA
97245	chr17	42979921	42981830	+	0	NA	promoter-TSS (NM_025267)	promoter-TSS (NM_025267)	310	NM_001321381	146923		NM_173079	ENSG00000198863	RUNDC1	RUND1	RUN domain containing 1	protein-coding
63422	chr13	114093271	114093830	+	0	NA	intron (NM_001320821, intron 1 of 25).2	L1M1|LINE|L1	-15595	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
152787	chr22	21816501	21817880	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	50455	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
131093	chr2	89820151	89820330	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-182333	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
127241	chr2	38671201	38671400	+	0	NA	intron (NM_138801, intron 1 of 6)	THE1D|LTR|ERVL-MaLR	5186	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
218868	chr8	60523201	60523400	+	0	NA	intron (NM_001242644, intron 1 of 6)	AluY|SINE|Alu	6313	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
208094	chr7	56106101	56107800	+	0	NA	promoter-TSS (NM_016139)	promoter-TSS (NM_016139)	-320	NM_001320327	51142		NM_016139	ENSG00000106153	CHCHD2	C7orf17|MIX17B|MNRR1|NS2TP|PARK22	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding
53151	chr12	57897851	57897950	+	0	NA	Intergenic	Intergenic	-1418	NR_148947	283387		NR_148947	ENSG00000245651	LOC283387	-	uncharacterized LOC283387	ncRNA
21896	chr1	207811821	207812280	+	0	NA	intron (NR_135299, intron 4 of 5)	intron (NR_135299, intron 4 of 5)	-6329	NR_026817	148696		NM_001039568		LOC148696	-	uncharacterized LOC148696	ncRNA
45167	chr11	117215501	117215700	+	0	NA	intron (NM_004716, intron 12 of 16)	AluY|SINE|Alu	-13686	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
67553	chr14	71267321	71268180	+	0	NA	Intergenic	Intergenic	-52726	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
229012	chr9	113687671	113687830	+	0	NA	Intergenic	Intergenic	93621	NM_001276262	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
30880	chr10	86939171	86939930	+	0	NA	intron (NM_024756, intron 6 of 6)	intron (NM_024756, intron 6 of 6)	-16209	NM_001330120	6623		NM_003087	ENSG00000173267	SNCG	BCSG1|SR	synuclein gamma	protein-coding
144107	chr20	33846851	33847150	+	0	NA	intron (NM_176812, intron 1 of 4)	MER34C2|LTR|ERV1	35652	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
223722	chr8	144463971	144464130	+	0	NA	3' UTR (NM_001129888, exon 3 of 3)	3' UTR (NM_001129888, exon 3 of 3)	-1179	NM_001330618	50626		NM_001330618	ENSG00000187954	ZFTRAF1	CHRP|CYHR1	zinc finger TRAF-type containing 1	protein-coding
146599	chr20	50121871	50122380	+	0	NA	3' UTR (NM_001162505, exon 6 of 6)	3' UTR (NM_001162505, exon 6 of 6)	-6168	NM_022442	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
1032	chr1	1875871	1876530	+	0	NA	intron (NM_001282538, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	14887	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
99635	chr17	50604471	50604930	+	0	NA	intron (NM_198376, intron 21 of 34)	intron (NM_198376, intron 21 of 34)	-30181	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
94989	chr17	32349371	32351230	+	0	NA	TTS (NR_030362)	TTS (NR_030362)	143	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
127829	chr2	44952101	44952880	+	0	NA	Intergenic	CpG	-10612	NR_103786	100506108		NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA
98808	chr17	48297751	48298530	+	0	NA	intron (NR_131239, intron 2 of 2)	intron (NR_131239, intron 2 of 2)	3793	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
71223	chr14	105165101	105165930	+	0	NA	intron (NM_002226, intron 2 of 25)	intron (NM_002226, intron 2 of 25)	3261	NM_002226	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
198147	chr6	90562201	90562850	+	0	NA	intron (NM_145333, intron 3 of 14)	L1PA5|LINE|L1	24547	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
133079	chr2	112434521	112435030	+	0	NA	Intergenic	Intergenic	-1130	NM_001164463	727851		NM_001164463	ENSG00000169629	RGPD8	RANBP2L1|RGP8|RanBP2alpha	RANBP2 like and GRIP domain containing 8	protein-coding
128240	chr2	54477401	54477600	+	0	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	21173	NM_003128	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
61027	chr13	48184201	48184800	+	0	NA	Intergenic	MER94B|DNA|hAT-Blackjack	-48706	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
203077	chr6	166325521	166325980	+	0	NA	intron (NM_145169, intron 5 of 7)	intron (NM_145169, intron 5 of 7)	16795	NR_130113	113402		NM_145169	ENSG00000198818	SFT2D1	C6orf83|pRGR1	SFT2 domain containing 1	protein-coding
141336	chr2	240573851	240574150	+	0	NA	intron (NM_018226, intron 4 of 10)	intron (NM_018226, intron 4 of 10)	5516	NM_018226	57140		NM_018226	ENSG00000142327	RNPEPL1	-	arginyl aminopeptidase like 1	protein-coding
56954	chr12	120499021	120499800	+	0	NA	TTS (NM_001037495)	TTS (NM_001037495)	3297	NM_003746	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
157514	chr22	45338921	45339500	+	0	NA	intron (NR_146323, intron 11 of 11)	AluSx1|SINE|Alu	20767	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
9066	chr1	44830871	44831450	+	0	NA	intron (NM_001166292, intron 5 of 22)	intron (NM_001166292, intron 5 of 22)	11784	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
117594	chr19	21833771	21834580	+	0	NA	intron (NM_001256653, intron 1 of 3)	AluSx1|SINE|Alu	2007	NM_001256654	7594		NM_003423	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
136017	chr2	172437501	172438650	+	0	NA	intron (NM_001365530, intron 1 of 25)	L2a|LINE|L2	10489	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
206019	chr7	26365001	26365450	+	0	NA	intron (NM_001199835, intron 5 of 6)	intron (NM_001199835, intron 5 of 6)	900	NM_001199838	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
216503	chr8	20253371	20253880	+	0	NA	intron (NM_021020, intron 2 of 3)	intron (NM_021020, intron 2 of 3)	19910	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
98101	chr17	45607621	45608230	+	0	NA	Intergenic	AluSg|SINE|Alu	-6063	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
89682	chr16	89382871	89383430	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-47768	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
173299	chr4	7104801	7105900	+	0	NA	Intergenic	Intergenic	-1974	NR_027441	730971		NR_027441		LINC02447	-	long intergenic non-protein coding RNA 2447	ncRNA
219700	chr8	80893671	80894280	+	0	NA	Intergenic	CpG	-19194	NM_001033723	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
31413	chr10	95564571	95564930	+	0	NA	Intergenic	Intergenic	-3379	NM_015385	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
94238	chr17	28665771	28665930	+	0	NA	intron (NM_003170, intron 1 of 36)	FRAM|SINE|Alu	3645	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
153470	chr22	25419351	25420230	+	0	NA	Intergenic	Intergenic	-14382	NM_001135772	91355		NM_182492	ENSG00000290796	LRP5L	-	LDL receptor related protein 5 like (pseudogene)	pseudo
16251	chr1	153963161	153964450	+	0	NA	promoter-TSS (NM_001271959)	promoter-TSS (NM_001271959)	-164	NM_001271961	27173		NM_014437	ENSG00000143570	SLC39A1	ZIP1|ZIRTL	solute carrier family 39 member 1	protein-coding
103274	chr17	77775771	77776130	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-47391	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
82165	chr16	14915721	14916230	+	0	NA	intron (NR_146231, intron 1 of 38)	AluY|SINE|Alu	4213	NR_146231	109951030		NR_146231		PKD1P3-NPIPA1	-	PKD1P3-NPIPA1 readthrough	pseudo
161140	chr3	38650851	38651730	+	0	NA	Intergenic	Intergenic	-1603	NM_198056	6331		NM_000335	ENSG00000183873	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	sodium voltage-gated channel alpha subunit 5	protein-coding
51218	chr12	50621671	50622030	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	116865	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
236214	chrX	65694621	65695650	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	27481	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
25998	chr10	12068321	12069780	+	0	NA	promoter-TSS (NM_018706)	promoter-TSS (NM_018706)	96	NM_018706	55526		NM_018706	ENSG00000181192	DHTKD1	AAKAD|AMOXAD|CMT2Q|E1a|OADC-E1|OADH-E1	dehydrogenase E1 and transketolase domain containing 1	protein-coding
90089	chr16	90028251	90028750	+	0	NA	TTS (NR_122031)	TTS (NR_122031)	1401	NR_122031	750		NM_001214	ENSG00000221819	GAS8-AS1	C16orf3	GAS8 antisense RNA 1	ncRNA
135352	chr2	160405501	160406000	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	2132	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
48074	chr12	7135651	7135950	+	0	NA	intron (NM_014718, intron 4 of 17)	intron (NM_014718, intron 4 of 17)	5429	NM_014718	9746		NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
129919	chr2	73292321	73292580	+	0	NA	exon (NM_001965, exon 2 of 2)	exon (NM_001965, exon 2 of 2)	1098	NM_001965	1961		NM_001965	ENSG00000135625	EGR4	AT133|NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
190377	chr5	179754001	179754580	+	0	NA	intron (NM_014757, intron 1 of 4)	AluJb|SINE|Alu	21468	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
70173	chr14	100326551	100327050	+	0	NA	intron (NM_001350877, intron 3 of 5)	AluSq|SINE|Alu	3461	NM_001350877	283600		NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDCMP|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
194879	chr6	34660101	34660300	+	0	NA	intron (NM_022758, intron 1 of 3)	AluJb|SINE|Alu	-35954	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
82190	chr16	14946571	14946930	+	0	NA	intron (NR_146231, intron 34 of 38)	AluSx4|SINE|Alu	9307	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
77945	chr15	89337701	89338300	+	0	NA	Intergenic	MIR|SINE|MIR	-3176	NM_002693	5428		NM_002693	ENSG00000140521	POLG	MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE	DNA polymerase gamma, catalytic subunit	protein-coding
7105	chr1	32114501	32114900	+	0	NA	intron (NM_012316, intron 1 of 13)	Tigger1|DNA|TcMar-Tigger	6644	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
106283	chr18	12704201	12704880	+	0	NA	intron (NM_020232, intron 1 of 6)	AluJr|SINE|Alu	1498	NM_020232	56984		NM_020232	ENSG00000128789	PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|PRAAS4|TNFSF5IP1	proteasome assembly chaperone 2	protein-coding
11645	chr1	91790271	91790830	+	0	NA	intron (NR_036634, intron 4 of 17)	intron (NR_036634, intron 4 of 17)	95601	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
8328	chr1	40168001	40168400	+	0	NA	intron (NM_012421, intron 1 of 7)	AluJb|SINE|Alu	6813	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
26870	chr10	25015801	25017330	+	0	NA	promoter-TSS (NM_024838)	promoter-TSS (NM_024838)	-47	NM_024838	79896		NM_024838	ENSG00000185875	THNSL1	TSH1	threonine synthase like 1	protein-coding
139063	chr2	218852821	218853400	+	0	NA	Intergenic	Intergenic	-6695	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
233972	chrX	2696471	2698630	+	0	NA	intron (NR_135623, intron 1 of 10)	intron (NR_135623, intron 1 of 10)	6255	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
212318	chr7	127259251	127259550	+	0	NA	Intergenic	Intergenic	-6459	NM_001371083	2918		NM_000845	ENSG00000179603	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	glutamate metabotropic receptor 8	protein-coding
170670	chr3	187722451	187722550	+	0	NA	exon (NM_001134738, exon 8 of 8)	exon (NM_001134738, exon 8 of 8)	12407	NM_001134738	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
120592	chr19	45012501	45013730	+	0	NA	intron (NM_006509, intron 3 of 10)	intron (NM_006509, intron 3 of 10)	11651	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
106912	chr18	26092051	26092150	+	0	NA	promoter-TSS (NM_001308201)	promoter-TSS (NM_001308201)	-883	NM_001308201	6760		NM_005637	ENSG00000141380	SS18	SMARCL1|SSXT|SYT	SS18 subunit of BAF chromatin remodeling complex	protein-coding
143471	chr20	31057171	31057330	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-200414	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
189484	chr5	173098301	173098500	+	0	NA	intron (NM_153607, intron 4 of 8)	AluY|SINE|Alu	42048	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
108718	chr18	77082471	77083030	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	50033	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
66970	chr14	66013651	66013850	+	0	NA	Intergenic	CpG	-472621	NR_110307	440184		NM_001004331	ENSG00000196553	CCDC196	C14orf53|LINC00238|NCRNA00238	coiled-coil domain containing 196	protein-coding
136230	chr2	174595211	174596480	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	1959	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
45542	chr11	118766151	118766450	+	0	NA	intron (NM_004397, intron 5 of 13)	AluJo|SINE|Alu	24648	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
221340	chr8	123159151	123159250	+	0	NA	intron (NM_001363151, intron 19 of 19)	intron (NM_001363151, intron 19 of 19)	-19847	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
174991	chr4	49657221	49657730	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	670833	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
187613	chr5	142969751	142970130	+	0	NA	intron (NR_146198, intron 11 of 22)	(TTG)n|Simple_repeat|Simple_repeat	-101030	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
190520	chr5	180590171	180590730	+	0	NA	intron (NM_052863, intron 2 of 2)	CpG	1049	NM_052863	92304		NM_052863	ENSG00000161055	SCGB3A1	HIN-1|HIN1|LU105|PnSP-2|UGRP2	secretoglobin family 3A member 1	protein-coding
65191	chr14	49630471	49630880	+	0	NA	intron (NM_018139, intron 1 of 2)	(CA)n|Simple_repeat|Simple_repeat	3311	NM_001378453	55172		NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
221875	chr8	128482351	128482450	+	0	NA	intron (NR_121672, intron 2 of 7)	MIRb|SINE|MIR	82279	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
61199	chr13	49377601	49377880	+	0	NA	intron (NM_001079670, intron 4 of 10)	SVA_F|Retroposon|SVA	23802	NM_030925	81617		NM_030925	ENSG00000102547	CAB39L	MLAA-34|MO25-BETA|MO2L|bA103J18.3	calcium binding protein 39 like	protein-coding
180000	chr5	959851	960150	+	0	NA	Intergenic	Intergenic	37340	NR_104614	100506688		NM_001242737	ENSG00000215246	LINC02982	-	long intergenic non-protein coding RNA 2982	ncRNA
101788	chr17	73204101	73204850	+	0	NA	intron (NM_018714, intron 9 of 13)	MIRb|SINE|MIR	11420	NM_018714	9382		NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
235704	chrX	48848821	48849180	+	0	NA	Intergenic	L1MA10|LINE|L1	-13390	NM_013271	27344		NM_013271	ENSG00000102109	PCSK1N	BigLEN|PEN|PROSAAS|SAAS|SCG8|SgVIII	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
139369	chr2	221529771	221530930	+	0	NA	intron (NM_004438, intron 3 of 17)	intron (NM_004438, intron 3 of 17)	41954	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
209367	chr7	76291071	76292380	+	0	NA	Intergenic	X9_LINE|LINE|L1	-10948	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
10142	chr1	59903201	59903400	+	0	NA	intron (NR_134981, intron 6 of 7)	L3|LINE|CR1	23473	NM_000775	1573		NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding
95619	chr17	37608801	37610380	+	0	NA	promoter-TSS (NM_001163545)	promoter-TSS (NM_001163545)	-172	NM_001163544	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
91611	chr17	5379251	5379550	+	0	NA	intron (NM_001083585, intron 15 of 16)	L2b|LINE|L2	-40241	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
65898	chr14	55265171	55265480	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-6096	NM_017943	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
195440	chr6	36966101	36966680	+	0	NA	Intergenic	L1MB8|LINE|L1	11652	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
79091	chr16	181001	182200	+	0	NA	TTS (NM_005331)	TTS (NM_005331)	1141	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
45054	chr11	117050851	117051700	+	0	NA	intron (NM_001281748, intron 1 of 24)	MLT2B2|LTR|ERVL	47153	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
171246	chr3	195803721	195803980	+	0	NA	intron (NM_018406, intron 1 of 24)	intron (NM_018406, intron 1 of 24)	8079	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
227844	chr9	93499271	93499630	+	0	NA	intron (NM_001286722, intron 5 of 17)	AluSz6|SINE|Alu	-45849	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
202508	chr6	158535701	158536590	+	0	NA	promoter-TSS (NM_001376856)	promoter-TSS (NM_001376856)	-495	NM_020823	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
54631	chr12	92785151	92785530	+	0	NA	intron (NM_003566, intron 22 of 28)	intron (NM_003566, intron 22 of 28)	82351	NM_001377329	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
187714	chr5	143387651	143387750	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	15583	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
172482	chr4	2172521	2173230	+	0	NA	intron (NM_181808, intron 11 of 25)	L1ME3B|LINE|L1	69246	NM_001303143	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
136384	chr2	176122401	176124000	+	0	NA	exon (NM_014213, exon 1 of 2)	exon (NM_014213, exon 1 of 2)	481	NM_014213	3235		NM_014213	ENSG00000128709	HOXD9	HOX4|HOX4C|Hox-4.3|Hox-5.2	homeobox D9	protein-coding
200926	chr6	139150871	139151350	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	16030	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
33816	chr10	123451221	123451480	+	0	NA	Intergenic	Intergenic	-215005	NM_153442	2849		NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding
235953	chrX	53356251	53356350	+	0	NA	Intergenic	Intergenic	-34950	NM_001111125	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
73589	chr15	44536021	44538050	+	0	NA	promoter-TSS (NR_034171)	promoter-TSS (NR_034171)	-33	NM_001284336	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
34666	chr10	133348151	133348600	+	0	NA	intron (NM_145202, intron 1 of 4)	intron (NM_145202, intron 1 of 4)	1002	NM_145202	118471		NM_145202	ENSG00000165828	PRAP1	PRO1195|UPA	proline rich acidic protein 1	protein-coding
238415	chrX	150582421	150582730	+	0	NA	intron (NM_001376908, intron 1 of 14)	MLT1C|LTR|ERVL-MaLR	13954	NM_000252	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
231618	chr9	131575151	131575450	+	0	NA	Intergenic	Intergenic	29777	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
112288	chr19	5831151	5831530	+	0	NA	3' UTR (NM_001381959, exon 4 of 4)	3' UTR (NM_001381959, exon 4 of 4)	7452	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
113321	chr19	8586951	8587330	+	0	NA	intron (NM_030957, intron 18 of 25)	MIRb|SINE|MIR	5056	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
210842	chr7	101016751	101017880	+	0	NA	intron (NM_001164462, intron 10 of 11)	intron (NM_001164462, intron 10 of 11)	293	NR_120519	102724094		NR_120519	ENSG00000227053	MUC12-AS1	-	MUC12 antisense RNA 1	ncRNA
40496	chr11	64262371	64263200	+	0	NA	exon (NM_001184883, exon 17 of 29)	exon (NM_001184883, exon 17 of 29)	-7746	NM_001378076	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
231485	chr9	131372751	131374750	+	0	NA	promoter-TSS (NM_001384822)	promoter-TSS (NM_001384822)	99	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
238688	chrX	154061751	154062250	+	0	NA	intron (NM_001316337, intron 2 of 4)	L2a|LINE|L2	34969	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
206313	chr7	30250421	30250680	+	0	NA	intron (NR_136267, intron 3 of 3)	intron (NR_136267, intron 3 of 3)	-34047	NM_147128	223082		NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
83203	chr16	23519271	23519430	+	0	NA	Intergenic	Intergenic	-8856	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
186469	chr5	138024671	138025080	+	0	NA	intron (NM_016603, intron 1 of 22)	AluSx|SINE|Alu	-7899	NR_037900	100130172		NR_037900		FAM13B-AS1	-	FAM13B antisense RNA 1	ncRNA
133373	chr2	118011951	118012330	+	0	NA	intron (NM_019044, intron 1 of 23)	AluSz6|SINE|Alu	1930	NM_019044	54520		NM_019044	ENSG00000125633	CCDC93	-	coiled-coil domain containing 93	protein-coding
128573	chr2	60903321	60903780	+	0	NA	intron (NM_001291746, intron 4 of 9)	AluSz|SINE|Alu	21976	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
235603	chrX	47648321	47648580	+	0	NA	intron (NM_005229, intron 1 of 5)	intron (NM_005229, intron 1 of 5)	2154	NM_001114123	2002		NM_005229	ENSG00000126767	ELK1	-	ETS transcription factor ELK1	protein-coding
180281	chr5	1814721	1814980	+	0	NA	intron (NM_004553, intron 3 of 3)	MLT1B|LTR|ERVL-MaLR	13443	NM_004553	4726		NM_004553	ENSG00000145494	NDUFS6	CI-13kA|CI-13kD-A|CI13KDA|MC1DN9	NADH:ubiquinone oxidoreductase subunit S6	protein-coding
208394	chr7	66688771	66689130	+	0	NA	intron (NM_001367745, intron 1 of 7)	AluSx|SINE|Alu	6784	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
59447	chr13	25899451	25899950	+	0	NA	intron (NM_016529, intron 33 of 36)	L2|LINE|L2	152316	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
115187	chr19	14443401	14443980	+	0	NA	intron (NM_002741, intron 3 of 21)	intron (NM_002741, intron 3 of 21)	3413	NM_213560	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
100974	chr17	64534001	64534800	+	0	NA	intron (NR_133644, intron 16 of 19)	intron (NR_133644, intron 16 of 19)	27423	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
131393	chr2	96262651	96263230	+	0	NA	intron (NM_017849, intron 2 of 3)	AluSx1|SINE|Alu	3057	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
209605	chr7	77637971	77638130	+	0	NA	intron (NM_001131008, intron 16 of 17)	AluY|SINE|Alu	58215	NR_134254	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
184289	chr5	96809321	96809580	+	0	NA	intron (NM_001198541, intron 1 of 18)	intron (NM_001198541, intron 1 of 18)	-1261	NM_001349244	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
14417	chr1	144322571	144323000	+	0	NA	Intergenic	Intergenic	-8847	NR_160535	105371215		NR_160535		LOC105371215	-	uncharacterized LOC105371215	ncRNA
5562	chr1	25907921	25908380	+	0	NA	Intergenic	Intergenic	-1273	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
36790	chr11	9481951	9482250	+	0	NA	intron (NM_001282656, intron 7 of 15)	AluYh3|SINE|Alu	21088	NM_003442	7702		NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
30133	chr10	74055951	74057000	+	0	NA	intron (NM_014000, intron 2 of 21)	intron (NM_014000, intron 2 of 21)	58359	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
1499	chr1	2768901	2769600	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	31618	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
71706	chr15	20338751	20338930	+	0	NA	Intergenic	Intergenic	56096	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
194846	chr6	34425561	34426880	+	0	NA	promoter-TSS (NM_001014)	promoter-TSS (NM_001014)	-95	NM_001202470	100529239		NM_001202470	ENSG00000270800	RPS10-NUDT3	-	RPS10-NUDT3 readthrough	protein-coding
70008	chr14	100073691	100074130	+	0	NA	intron (NM_016337, intron 1 of 13)	intron (NM_016337, intron 1 of 13)	8488	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
182514	chr5	65102651	65104150	+	0	NA	Intergenic	Intergenic	334470	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
125906	chr2	24827451	24828130	+	0	NA	intron (NM_001377132, intron 14 of 21)	intron (NM_001377132, intron 14 of 21)	34365	NM_001199803	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
106698	chr18	23384571	23384730	+	0	NA	intron (NR_148385, intron 4 of 13)	intron (NR_148385, intron 4 of 13)	53311	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
91040	chr17	2878951	2879250	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	82662	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
166232	chr3	112127501	112128080	+	0	NA	intron (NM_001190260, intron 2 of 4).2	intron (NM_001190260, intron 2 of 4).2	5458	NM_152785	257144		NM_152785	ENSG00000174500	GCSAM	GCAT2|GCET2|HGAL	germinal center associated signaling and motility	protein-coding
52308	chr12	54777221	54777880	+	0	NA	Intergenic	L1PA5|LINE|L1	-76966	NM_058173	118430		NM_058173	ENSG00000172551	MUCL1	SBEM	mucin like 1	protein-coding
209955	chr7	92648051	92648350	+	0	NA	intron (NM_001145306, intron 5 of 7)	LTR40a|LTR|ERVL	-57810	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
113827	chr19	10615321	10616030	+	0	NA	intron (NM_001145056, intron 1 of 21)	Tigger2a|DNA|TcMar-Tigger	-9878	NM_001363611	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
225150	chr9	33770421	33770750	+	0	NA	intron (NM_001197098, intron 1 of 4)	MLT1B|LTR|ERVL-MaLR	19764	NM_001197098	5646		NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	serine protease 3	protein-coding
137405	chr2	196259751	196261130	+	0	NA	intron (NR_110226, intron 2 of 2)	L2b|LINE|L2	416	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
36765	chr11	9390621	9390880	+	0	NA	intron (NM_006391, intron 1 of 24)	AluJo|SINE|Alu	6098	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
148806	chr21	8246111	8247280	+	0	NA	intron (NR_003287, intron 1 of 2)	CpG	-2810	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
230272	chr9	127919921	127920230	+	0	NA	TTS (NM_001135219)	TTS (NM_001135219)	-3034	NM_175039	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
75920	chr15	70095521	70097000	+	0	NA	exon (NM_005078, exon 2 of 20)	exon (NM_005078, exon 2 of 20)	492	NM_001282981	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
20300	chr1	197197551	197198050	+	0	NA	intron (NR_135153, intron 2 of 11)	MER103C|DNA|hAT-Charlie	3493	NR_135153	360023		NM_194314	ENSG00000177888	ZBTB41	FRBZ1|ZNF924	zinc finger and BTB domain containing 41	protein-coding
236800	chrX	79152621	79154450	+	0	NA	intron (NM_032553, intron 1 of 2)	intron (NM_032553, intron 1 of 2)	8847	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
125656	chr2	20015451	20015800	+	0	NA	Intergenic	Intergenic	-2957	NM_002381	4148		NM_002381	ENSG00000132031	MATN3	DIPOA|EDM5|HOA|OADIP|OS2|SEMDBCD	matrilin 3	protein-coding
19030	chr1	169682121	169682450	+	0	NA	Intergenic	Intergenic	26572	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
96644	chr17	40607621	40609080	+	0	NA	Intergenic	MIRc|SINE|MIR	39468	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
116335	chr19	17844701	17845300	+	0	NA	intron (NM_000215, intron 1 of 23)	intron (NM_000215, intron 1 of 23)	2982	NM_000215	3718		NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
149974	chr21	36696771	36696930	+	0	NA	Intergenic	CpG	-2265	NM_005069	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
179512	chr4	184745721	184746350	+	0	NA	Intergenic	Intergenic	-11939	NR_104593	79682		NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
195054	chr6	35496501	35498950	+	0	NA	promoter-TSS (NM_003214)	promoter-TSS (NM_003214)	-646	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
38516	chr11	45890321	45890830	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	4924	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
78889	chr15	100889771	100889930	+	0	NA	intron (NM_001293815, intron 3 of 9)	intron (NM_001293815, intron 3 of 9)	10019	NM_001293815	220		NM_000693	ENSG00000184254	ALDH1A3	ALDH1A6|ALDH6|MCOP8|RALDH3	aldehyde dehydrogenase 1 family member A3	protein-coding
126055	chr2	25588651	25589150	+	0	NA	intron (NM_001320935, intron 4 of 17)	intron (NM_001320935, intron 4 of 17)	61322	NM_001256308	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
74908	chr15	63614051	63614550	+	0	NA	intron (NM_003922, intron 76 of 77)	MIRb|SINE|MIR	-13473	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
92925	chr17	16666651	16667450	+	0	NA	Intergenic	CpG	-13200	NM_020787	57547		NM_020787	ENSG00000197566	ZNF624	-	zinc finger protein 624	protein-coding
35148	chr11	729401	729930	+	0	NA	Intergenic	Intergenic	-17799	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
133046	chr2	112181321	112182030	+	0	NA	intron (NM_001128165, intron 4 of 6)	L2b|LINE|L2	43290	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
122448	chr19	49493411	49494730	+	0	NA	Intergenic	AluY|SINE|Alu	-2364	NM_001015	6205		NM_001015	ENSG00000142534	RPS11	S11|uS17	ribosomal protein S11	protein-coding
1009	chr1	1854221	1854480	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	36737	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
84533	chr16	30526071	30528030	+	0	NA	promoter-TSS (NM_024671)	promoter-TSS (NM_024671)	-484	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
181561	chr5	43137071	43137780	+	0	NA	intron (NM_001330716, intron 3 of 7)	L1MB1|LINE|L1	15860	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
207708	chr7	46072871	46073030	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	-151678	NM_000598	3486		NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP-3|IBP3|IGFBP-3	insulin like growth factor binding protein 3	protein-coding
223895	chr9	297251	297900	+	0	NA	intron (NM_203447, intron 4 of 47)	intron (NM_203447, intron 4 of 47)	24527	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
61397	chr13	51599851	51600330	+	0	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	15628	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
211434	chr7	105065571	105066030	+	0	NA	intron (NM_182931, intron 5 of 26)	MER44A|DNA|TcMar-Tigger	51595	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
85489	chr16	50739401	50739800	+	0	NA	Intergenic	Intergenic	-2486	NM_001378744	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
81481	chr16	8934871	8935030	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	1689	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
31849	chr10	99827051	99827150	+	0	NA	intron (NM_000392, intron 19 of 31)	HERVK-int|LTR|ERVK	44460	NM_000392	1244		NM_000392	ENSG00000023839	ABCC2	ABC30|CMOAT|DJS|MRP2|cMRP	ATP binding cassette subfamily C member 2	protein-coding
35841	chr11	2308001	2308200	+	0	NA	intron (NM_139022, intron 3 of 9)	intron (NM_139022, intron 3 of 9)	-4960	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
170999	chr3	194684071	194684430	+	0	NA	Intergenic	L2c|LINE|L2	-1633	NM_153690	131583		NM_153690	ENSG00000185112	FAM43A	-	family with sequence similarity 43 member A	protein-coding
209861	chr7	90348651	90348750	+	0	NA	intron (NM_033107, intron 1 of 9)	Tigger2|DNA|TcMar-Tigger	1984	NM_001042717	85865		NM_033107	ENSG00000105793	GTPBP10	ObgH2|UG0751c10	GTP binding protein 10	protein-coding
52742	chr12	56635711	56637780	+	0	NA	promoter-TSS (NM_013449)	promoter-TSS (NM_013449)	-386	NM_013449	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
231992	chr9	133342421	133342900	+	0	NA	3' UTR (NM_181491, exon 4 of 4)	3' UTR (NM_181491, exon 4 of 4)	5471	NM_133640	6837		NM_006752	ENSG00000148297	MED22	MED24|SRB6|SURF5|surf-5	mediator complex subunit 22	protein-coding
105065	chr17	82087001	82087930	+	0	NA	exon (NM_004104, exon 20 of 43)	exon (NM_004104, exon 20 of 43)	2675	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
104463	chr17	81109971	81110480	+	0	NA	non-coding (NR_169575, exon 14 of 14)	non-coding (NR_169575, exon 14 of 14)	12614	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
141491	chr2	241103971	241104580	+	0	NA	Intergenic	AluSx|SINE|Alu	-1943	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
27344	chr10	30677421	30677750	+	0	NA	Intergenic	Intergenic	-14689	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
151761	chr22	17983201	17983730	+	0	NA	intron (NM_015241, intron 1 of 31)	intron (NM_015241, intron 1 of 31)	-2504	NR_030378	693233		NR_030378	ENSG00000207780	MIR648	MIRN648|hsa-mir-648	microRNA 648	ncRNA
190871	chr6	2161701	2161900	+	0	NA	intron (NM_001500, intron 1 of 10)	Tigger19b|DNA|TcMar-Tigger	14191	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
92717	chr17	14202671	14202830	+	0	NA	intron (NM_001303, intron 6 of 6)	intron (NM_001303, intron 6 of 6)	34112	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
40285	chr11	63849571	63850180	+	0	NA	intron (NM_004954, intron 1 of 16)	MIR|SINE|MIR	10765	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
93508	chr17	19001351	19001450	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	3364	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
118480	chr19	35904971	35905400	+	0	NA	TTS (NM_014266)	TTS (NM_014266)	2656	NM_001007469	10870		NM_014266	ENSG00000126264	HCST	DAP10|KAP10|PIK3AP	hematopoietic cell signal transducer	protein-coding
203226	chr6	168840071	168840230	+	0	NA	Intergenic	CpG	124232	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
16771	chr1	155466101	155466980	+	0	NA	intron (NM_018489, intron 3 of 27)	intron (NM_018489, intron 3 of 27)	33360	NR_034180	645682		NR_034180	ENSG00000237872	POU5F1P4	OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1	POU class 5 homeobox 1 pseudogene 4	pseudo
149038	chr21	14773771	14773980	+	0	NA	Intergenic	Intergenic	-130768	NM_001256579	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
58686	chr12	132548221	132548880	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-33447	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
29416	chr10	70221371	70222180	+	0	NA	intron (NM_021129, intron 2 of 10)	intron (NM_021129, intron 2 of 10)	11654	NM_021129	5464		NM_021129	ENSG00000180817	PPA1	HEL-S-66p|IOPPP|PP|PP1|SID6-8061	inorganic pyrophosphatase 1	protein-coding
239101	chrY	10999851	10999950	+	0	NA	Intergenic	Intergenic	1089102	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
228457	chr9	99842571	99843780	+	0	NA	intron (NM_173200, intron 6 of 8)	intron (NM_173200, intron 6 of 8)	21290	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
170124	chr3	183284271	183284430	+	0	NA	intron (NM_015078, intron 14 of 29)	intron (NM_015078, intron 14 of 29)	31097	NM_032047	84002		NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
152613	chr22	21415021	21415430	+	0	NA	Intergenic	Intergenic	-2146	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
112693	chr19	7065401	7065750	+	0	NA	Intergenic	AluJr4|SINE|Alu	-4128	NM_001044387	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
25064	chr10	3805101	3806380	+	0	NA	Intergenic	MIR3|SINE|MIR	-20459	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
141760	chr2	241983721	241984380	+	0	NA	intron (NR_110220, intron 3 of 3)	intron (NR_110220, intron 3 of 3)	13367	NR_110592	102723927		NR_110592	ENSG00000237940	LINC01238	-	long intergenic non-protein coding RNA 1238	ncRNA
101294	chr17	66415621	66416280	+	0	NA	intron (NR_110822, intron 1 of 3)	intron (NR_110822, intron 1 of 3)	904	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
183981	chr5	88828021	88828280	+	0	NA	promoter-TSS (NM_001364342)	promoter-TSS (NM_001364342)	-962	NM_001364341	4208		NM_002397	ENSG00000081189	MEF2C	C5DELq14.3|DEL5q14.3|NEDHSIL	myocyte enhancer factor 2C	protein-coding
111410	chr19	3771821	3772430	+	0	NA	intron (NM_001319074, intron 1 of 2)	intron (NM_001319074, intron 1 of 2)	103	NM_001319074	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
151490	chr21	46304751	46305250	+	0	NA	intron (NM_001286476, intron 6 of 8)	L1MB2|LINE|L1	13220	NM_001286463	54058		NM_058180	ENSG00000160298	C21orf58	-	chromosome 21 open reading frame 58	protein-coding
47221	chr12	916151	916650	+	0	NA	exon (NM_001297419, exon 9 of 12)	exon (NM_001297419, exon 9 of 12)	16676	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
167625	chr3	129586721	129586980	+	0	NA	intron (NM_015103, intron 2 of 35)	intron (NM_015103, intron 2 of 35)	19826	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
172995	chr4	4260221	4260930	+	0	NA	Intergenic	AluSz|SINE|Alu	-12333	NM_032927	85013		NM_032927	ENSG00000132406	TMEM128	-	transmembrane protein 128	protein-coding
238293	chrX	149486151	149486780	+	0	NA	TTS (NR_104128)	TTS (NR_104128)	18841	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
171279	chr3	195892501	195892980	+	0	NA	promoter-TSS (NM_001308046)	promoter-TSS (NM_001308046)	4	NM_001382275	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
148587	chr21	5100771	5100930	+	0	NA	Intergenic	Intergenic	-1210	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
163018	chr3	49795271	49795650	+	0	NA	intron (NM_001007540, intron 7 of 18)	intron (NM_001007540, intron 7 of 18)	4413	NM_001007540	389118		NM_001007540	ENSG00000187492	CDHR4	CDH29|PRO34300	cadherin related family member 4	protein-coding
17579	chr1	156845121	156846280	+	0	NA	exon (NM_014215, exon 10 of 22)	exon (NM_014215, exon 10 of 22)	13417	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
120747	chr19	45400021	45400900	+	0	NA	intron (NM_001142502, intron 1 of 12)	intron (NM_001142502, intron 1 of 12)	4609	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
87524	chr16	71896851	71897550	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluJb|SINE|Alu	1669	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
83726	chr16	28552251	28552550	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1520	NM_138414	112869		NM_138414	ENSG00000176476	SGF29	CCDC101|STAF36|TDRD29	SAGA complex associated factor 29	protein-coding
131099	chr2	89833151	89834030	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-195683	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
201097	chr6	142842321	142843650	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	102191	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
169728	chr3	172218571	172218930	+	0	NA	intron (NM_022763, intron 3 of 25)	MIRb|SINE|MIR	178219	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
196082	chr6	42293221	42294030	+	0	NA	intron (NM_033502, intron 4 of 17)	intron (NM_033502, intron 4 of 17)	-75764	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
32602	chr10	103587251	103587680	+	0	NA	intron (NM_004210, intron 4 of 5)	intron (NM_004210, intron 4 of 5)	-70023	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
16948	chr1	155925971	155926130	+	0	NA	promoter-TSS (NR_003005)	promoter-TSS (NR_003005)	36	NR_003005	677771		NR_003005	ENSG00000281394	SCARNA4	ACA26	small Cajal body-specific RNA 4	ncRNA
188352	chr5	151711101	151711300	+	0	NA	Intergenic	L1MA3|LINE|L1	-24285	NM_001309443	6678		NM_003118	ENSG00000113140	SPARC	BM-40|OI17|ON|ONT	secreted protein acidic and cysteine rich	protein-coding
100038	chr17	58003921	58004630	+	0	NA	3' UTR (NM_006924, exon 4 of 4)	3' UTR (NM_006924, exon 4 of 4)	2971	NM_001078166	6426		NM_006924	ENSG00000136450	SRSF1	ASF|NEDFBA|SF2|SF2p33|SFRS1|SRp30a	serine and arginine rich splicing factor 1	protein-coding
206160	chr7	28005201	28005400	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-175157	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
99412	chr17	50054921	50055370	+	0	NA	promoter-TSS (NM_002204)	promoter-TSS (NM_002204)	594	NR_038230	284080		NR_038230	ENSG00000246640	PICART1	-	p53 inducible cancer associated RNA transcript 1	ncRNA
106666	chr18	23132671	23132830	+	0	NA	Intergenic	AluY|SINE|Alu	-1814	NR_023359	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
165350	chr3	88203501	88203750	+	0	NA	Intergenic	Intergenic	53666	NM_173824	285237		NM_173824	ENSG00000179021	C3orf38	-	chromosome 3 open reading frame 38	protein-coding
141517	chr2	241210971	241212700	+	0	NA	intron (NM_001370694, intron 15 of 24)	intron (NM_001370694, intron 15 of 24)	23158	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
112794	chr19	7486451	7486880	+	0	NA	intron (NM_001300881, intron 1 of 4)	AluY|SINE|Alu	2370	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
152714	chr22	21649501	21649700	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-2581	NR_169730	107985532		NR_169729		LOC107985532	-	uncharacterized LOC107985532	pseudo
131142	chr2	91507671	91507830	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	152199	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
63084	chr13	113205551	113205650	+	0	NA	intron (NM_001353091, intron 1 of 14)	L1MB5|LINE|L1	-2593	NM_001278513	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
155923	chr22	39612721	39613380	+	0	NA	intron (NM_001003406, intron 3 of 35)	intron (NM_001003406, intron 3 of 35)	42297	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
79321	chr16	565021	565300	+	0	NA	exon (NM_145270, exon 3 of 3)	exon (NM_145270, exon 3 of 3)	-1845	NM_001301159	283948		NM_176677	ENSG00000257108	NHLRC4	-	NHL repeat containing 4	protein-coding
113545	chr19	10219601	10220600	+	0	NA	Intergenic	AluJo|SINE|Alu	-10313	NR_036206	100422925		NR_036206	ENSG00000264266	MIR4322	-	microRNA 4322	ncRNA
142052	chr20	1816821	1817280	+	0	NA	Intergenic	Intergenic	-37304	NR_037142	100289473		NR_037142	ENSG00000293374	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
91117	chr17	3684601	3684800	+	0	NA	intron (NM_002561, intron 9 of 11)	intron (NM_002561, intron 9 of 11)	11455	NM_001204519	5026		NM_002561	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X 5	protein-coding
64403	chr14	24171121	24172230	+	0	NA	promoter-TSS (NM_005132)	promoter-TSS (NM_005132)	-405	NM_005132	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
10218	chr1	62449271	62449630	+	0	NA	intron (NM_001017416, intron 8 of 8)	intron (NM_001017416, intron 8 of 8)	12401	NM_003368	7398		NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
153335	chr22	24327951	24328050	+	0	NA	intron (NM_001254732, intron 5 of 14)	intron (NM_001254732, intron 5 of 14)	-14108	NM_001254733	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
198196	chr6	96920251	96920750	+	0	NA	intron (NM_001323258, intron 2 of 7)	intron (NM_001323258, intron 2 of 7)	-4120	NR_136580	114792		NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
23342	chr1	228130671	228131480	+	0	NA	Intergenic	ERV24_Prim-int|LTR|ERV1	-9009	NM_001242839	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
1383	chr1	2534651	2534950	+	0	NA	Intergenic	Intergenic	-4537	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
1235	chr1	2282771	2282930	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	54531	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
233788	chrX	1439951	1440500	+	0	NA	intron (NM_001173473, intron 2 of 12).2	AluY|SINE|Alu	12684	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
107025	chr18	32097901	32098630	+	0	NA	intron (NM_198128, intron 1 of 4)	AluSz|SINE|Alu	5659	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
85037	chr16	31714451	31715750	+	0	NA	intron (NM_001130913, intron 1 of 4)	MER92B|LTR|ERV1	1871	NM_001130913	124411		NM_001004300	ENSG00000197302	KRBOX5	ZNF720	KRAB box domain containing 5	protein-coding
165665	chr3	101856871	101857030	+	0	NA	intron (NM_031419, intron 9 of 11)	L2c|LINE|L2	7436	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
127410	chr2	42103751	42104580	+	0	NA	Intergenic	MER39|LTR|ERV1	56144	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
184853	chr5	111757221	111758230	+	0	NA	promoter-TSS (NM_001142481)	promoter-TSS (NM_001142481)	4	NM_001142478	9315		NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
65697	chr14	52740221	52740480	+	0	NA	intron (NM_001130701, intron 2 of 11)	intron (NM_001130701, intron 2 of 11)	10184	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
226815	chr9	77453951	77454330	+	0	NA	intron (NR_121184, intron 1 of 4)	intron (NR_121184, intron 1 of 4)	6491	NR_121184	101927422		NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
218041	chr8	38797871	38798950	+	0	NA	intron (NR_148050, intron 2 of 4)	intron (NR_148050, intron 2 of 4)	-7040	NM_001352791	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
108540	chr18	74492871	74493030	+	0	NA	Intergenic	Intergenic	-3413	NM_001370249	55748		NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	carnosine dipeptidase 2	protein-coding
149292	chr21	28785821	28786080	+	0	NA	Intergenic	Intergenic	99417	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
130144	chr2	74848971	74850250	+	0	NA	intron (NM_001371525, intron 1 of 17)	intron (NM_001371525, intron 1 of 17)	14440	NM_001371525	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
50645	chr12	48766051	48766350	+	0	NA	TTS (NM_015270)	TTS (NM_015270)	5837	NR_039850	100616262		NR_039850	ENSG00000264201	MIR4701	-	microRNA 4701	ncRNA
170977	chr3	194573471	194574150	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-10458	NR_047573	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
48246	chr12	8389621	8390880	+	0	NA	intron (NR_024420, intron 1 of 1)	CpG	502	NR_024420	389634		NM_001012988	ENSG00000226091	LINC00937	-	long intergenic non-protein coding RNA 937	ncRNA
22517	chr1	221825951	221826250	+	0	NA	Intergenic	LTR1F1|LTR|ERV1	14566	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
14650	chr1	145612201	145612400	+	0	NA	intron (NM_001097613, intron 2 of 14)	L2c|LINE|L2	4312	NM_001097612	653519		NM_001097612	ENSG00000117262	GPR89A	GPHR|GPR89|GPR89B|SH120|UNQ192	G protein-coupled receptor 89A	protein-coding
201373	chr6	144854551	144855330	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	271792	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
230994	chr9	129498701	129499380	+	0	NA	intron (NR_038955, intron 2 of 4)	intron (NR_038955, intron 2 of 4)	10380	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
23708	chr1	231651701	231651900	+	0	NA	intron (NM_001164556, intron 1 of 4)	L1HS|LINE|L1	24985	NM_001164555	27185		NM_018662	ENSG00000162946	DISC1	C1orf136|SCZD9	DISC1 scaffold protein	protein-coding
187155	chr5	140556121	140556690	+	0	NA	intron (NM_001035235, intron 2 of 4)	L2a|LINE|L2	1051	NR_045587	10011		NM_001035235	ENSG00000213523	SRA1	SRA|SRAP|STRAA1|pp7684	steroid receptor RNA activator 1	protein-coding
38224	chr11	36420551	36421980	+	0	NA	intron (NM_001160167, intron 4 of 8)	intron (NM_001160167, intron 4 of 8)	20268	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
166066	chr3	108832571	108832730	+	0	NA	intron (NM_016388, intron 2 of 5)	intron (NM_016388, intron 2 of 5)	9864	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
103485	chr17	78359701	78361480	+	0	NA	promoter-TSS (NM_003955)	promoter-TSS (NM_003955)	142	NR_110845	101928674		NR_110845	ENSG00000266970	SOCS3-DT	-	SOCS3 divergent transcript	ncRNA
66472	chr14	61564751	61565050	+	0	NA	non-coding (NR_110416, exon 4 of 5)	non-coding (NR_110416, exon 4 of 5)	5294	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
138374	chr2	203998201	203998780	+	0	NA	Intergenic	Intergenic	61727	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123574	chr19	54454171	54454330	+	0	NA	intron (NM_001375640, intron 5 of 14).3	MIRc|SINE|MIR	4593	NM_001375640	114823		NM_052925	ENSG00000167615	LENG8	pp13842	leukocyte receptor cluster member 8	protein-coding
232125	chr9	133989701	133990730	+	0	NA	intron (NM_001134398, intron 1 of 29)	intron (NM_001134398, intron 1 of 29)	2109	NM_001134398	7410		NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
5132	chr1	24891851	24892630	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	27176	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
209348	chr7	76264101	76264850	+	0	NA	intron (NM_001291831, intron 8 of 15)	intron (NM_001291831, intron 8 of 15)	-38198	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
165801	chr3	105809971	105810300	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	57456	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
83522	chr16	27459951	27460500	+	0	NA	TTS (NM_001286242)	TTS (NM_001286242)	-6832	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
186745	chr5	139306171	139306780	+	0	NA	intron (NM_001194956, intron 1 of 13)	AmnSINE1|SINE|5S-Deu-L2	12725	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
154151	chr22	31274771	31274930	+	0	NA	intron (NM_005569, intron 14 of 15)	intron (NM_005569, intron 14 of 15)	17638	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
179133	chr4	169078871	169079230	+	0	NA	Intergenic	AluSg|SINE|Alu	-68795	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
93346	chr17	18219921	18220180	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5585	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
97660	chr17	44207851	44208750	+	0	NA	promoter-TSS (NR_106840)	promoter-TSS (NR_106840)	-461	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
78414	chr15	92097171	92097880	+	0	NA	intron (NM_013272, intron 3 of 9)	intron (NM_013272, intron 3 of 9)	243221	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
219757	chr8	81086801	81087000	+	0	NA	intron (NM_018440, intron 1 of 8)	L1ME3E|LINE|L1	25168	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
157963	chr22	49813701	49813900	+	0	NA	intron (NM_001304808, intron 2 of 12)	AluSx1|SINE|Alu	10531	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
129780	chr2	71157271	71157730	+	0	NA	Intergenic	Intergenic	26866	NM_005791	10199		NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P|PPP1R106	M-phase phosphoprotein 10	protein-coding
126583	chr2	28761351	28761650	+	0	NA	intron (NM_206876, intron 2 of 8)	intron (NM_206876, intron 2 of 8)	9670	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
103618	chr17	78733401	78733950	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	3227	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
17320	chr1	156465771	156466200	+	0	NA	3' UTR (NM_005920, exon 12 of 12)	3' UTR (NM_005920, exon 12 of 12)	24702	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
68166	chr14	75831401	75832050	+	0	NA	intron (NM_015072, intron 28 of 31)	intron (NM_015072, intron 28 of 31)	150270	NM_003239	7043		NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
144150	chr20	34045471	34046000	+	0	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	-3384	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
85814	chr16	56983251	56983750	+	0	NA	intron (NM_000078, intron 15 of 15)	intron (NM_000078, intron 15 of 15)	-6057	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
67082	chr14	68208651	68209500	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	385483	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
236678	chrX	77004071	77004230	+	0	NA	intron (NR_110403, intron 1 of 3)	intron (NR_110403, intron 1 of 3)	1351	NR_029905	442899		NR_029905	ENSG00000207995	MIR325	MIRN325|hsa-mir-325	microRNA 325	ncRNA
171122	chr3	195533121	195533600	+	0	NA	intron (NM_006241, intron 1 of 5)	AluSz|SINE|Alu	9965	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
3788	chr1	16705371	16705730	+	0	NA	intron (NR_026567, intron 4 of 10)	AluSq|SINE|Alu	14607	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
59826	chr13	30421551	30423530	+	0	NA	promoter-TSS (NM_001355247)	promoter-TSS (NM_001355247)	47	NM_001355247	171222		NM_001355247	ENSG00000236444	UBE2L5	UBCH7N2|UBE2L5P	ubiquitin conjugating enzyme E2 L5	protein-coding
54137	chr12	76541401	76541750	+	0	NA	intron (NM_001319652, intron 1 of 25)	AluSx1|SINE|Alu	18196	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
29175	chr10	68902521	68902780	+	0	NA	intron (NM_024045, intron 1 of 14)	L1MB3|LINE|L1	1335	NM_024045	79009		NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
156827	chr22	41939951	41940700	+	0	NA	promoter-TSS (NM_001110215)	promoter-TSS (NM_001110215)	-106	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
100292	chr17	59746921	59747850	+	0	NA	intron (NM_001329397, intron 5 of 10)	AluJr|SINE|Alu	39731	NM_001329401	81671		NM_030938	ENSG00000062716	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding
160638	chr3	31554001	31554400	+	0	NA	intron (NM_178862, intron 1 of 15)	Tigger11a|DNA|TcMar-Tigger	21275	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
97695	chr17	44314751	44315830	+	0	NA	exon (NM_006695, exon 7 of 11)	exon (NM_006695, exon 7 of 11)	6689	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
98607	chr17	47751701	47751900	+	0	NA	Intergenic	AluSx1|SINE|Alu	18564	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
71502	chr14	106013501	106014240	+	0	NA	Intergenic	Intergenic	-41601	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
6448	chr1	28245271	28245810	+	0	NA	Intergenic	AluSp|SINE|Alu	9416	NM_016311	93974		NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
166098	chr3	109852001	109852430	+	0	NA	Intergenic	L1M1|LINE|L1	249387	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
236351	chrX	70433551	70434930	+	0	NA	TTS (NM_017711)	TTS (NM_017711)	-10595	NM_021120	1741		NM_020730	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|PPP1R82|SAP102|XLID90|XLMR	discs large MAGUK scaffold protein 3	protein-coding
72106	chr15	28938151	28939450	+	0	NA	intron (NM_001353793, intron 1 of 12).2	AluSz6|SINE|Alu	4796	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
32979	chr10	110506401	110506800	+	0	NA	intron (NM_004419, intron 2 of 3)	intron (NM_004419, intron 2 of 3)	8693	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
189275	chr5	172073401	172073600	+	0	NA	intron (NM_005990, intron 12 of 18)	AluJr|SINE|Alu	-66862	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
171297	chr3	195950821	195951600	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	39069	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
177486	chr4	113943971	113944130	+	0	NA	intron (NM_001354211, intron 4 of 6)	L2a|LINE|L2	35597	NM_001354210	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
100127	chr17	58369971	58371130	+	0	NA	intron (NM_017763, intron 3 of 9)	intron (NM_017763, intron 3 of 9)	-18349	NR_073470	6827		NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H|Supt4a	SPT4 homolog, DSIF elongation factor subunit	protein-coding
230129	chr9	127723801	127724200	+	0	NA	intron (NM_144965, intron 7 of 13)	intron (NM_144965, intron 7 of 13)	7921	NM_144965	158248		NM_144965	ENSG00000167094	TTC16	-	tetratricopeptide repeat domain 16	protein-coding
92209	chr17	7856601	7859000	+	0	NA	promoter-TSS (NM_001330110)	promoter-TSS (NM_001330110)	91	NM_001320924	84316		NM_032356	ENSG00000183011	NAA38	LSMD1|MAK31|PFAAP2	N-alpha-acetyltransferase 38, NatC auxiliary subunit	protein-coding
30705	chr10	80544201	80544400	+	0	NA	intron (NM_001145719, intron 1 of 6)	LTR12C|LTR|ERV1	3481	NM_001145719	387694		NM_207372	ENSG00000178217	SH2D4B	-	SH2 domain containing 4B	protein-coding
16537	chr1	154950451	154951480	+	0	NA	intron (NM_001317734, intron 4 of 9)	intron (NM_001317734, intron 4 of 9)	5134	NM_020524	57326		NM_020524	ENSG00000163346	PBXIP1	HPIP	PBX homeobox interacting protein 1	protein-coding
26360	chr10	15879021	15879630	+	0	NA	Intergenic	Intergenic	-18792	NM_001318330	80013		NM_024948	ENSG00000148481	MINDY3	C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042	MINDY lysine 48 deubiquitinase 3	protein-coding
131077	chr2	88765401	88765900	+	0	NA	promoter-TSS (NR_015424)	promoter-TSS (NR_015424)	-252	NR_015424	645784		NR_015424	ENSG00000291127	ANKRD36BP2	-	ankyrin repeat domain 36B pseudogene 2	pseudo
201079	chr6	142785321	142785580	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	-147561	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
43711	chr11	86036721	86037850	+	0	NA	intron (NM_001206947, intron 1 of 18)	AluSg7|SINE|Alu	31799	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
215578	chr7	158828601	158830500	+	0	NA	promoter-TSS (NM_001367773)	promoter-TSS (NM_001367773)	-41	NM_020728	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
2312	chr1	9083351	9083850	+	0	NA	Intergenic	AluSq2|SINE|Alu	-11341	NM_001328619	6518		NM_003039	ENSG00000142583	SLC2A5	GLUT-5|GLUT5	solute carrier family 2 member 5	protein-coding
205911	chr7	25496471	25496900	+	0	NA	Intergenic	Intergenic	166455	NR_157819	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
210432	chr7	100092471	100092800	+	0	NA	TTS (NM_005916)	TTS (NM_005916)	1008	NR_029498	407014		NR_029498	ENSG00000207547	MIR25	MIRN25|hsa-mir-25|miR-25	microRNA 25	ncRNA
158356	chr22	50463721	50463980	+	0	NA	intron (NM_002972, intron 15 of 40)	intron (NM_002972, intron 15 of 40)	11185	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
222208	chr8	133056801	133057820	+	0	NA	non-coding (NR_146773, exon 1 of 1)	non-coding (NR_146773, exon 1 of 1)	2351	NR_146773	100302522		NR_146773	ENSG00000287736	PTCSC1	NCRNA00197|PTCSC	papillary thyroid carcinoma susceptibility candidate 1	ncRNA
156545	chr22	41432821	41433080	+	0	NA	TTS (NM_016272)	TTS (NM_016272)	13851	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
26395	chr10	17001221	17001480	+	0	NA	intron (NM_001081, intron 28 of 66)	LTR12_|LTR|ERV1	128461	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
79629	chr16	1126871	1127030	+	0	NA	Intergenic	Intergenic	-26156	NM_021098	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
76068	chr15	72374671	72374830	+	0	NA	intron (NM_001318825, intron 1 of 13)	intron (NM_001318825, intron 1 of 13)	1264	NR_134869	3073		NM_000520	ENSG00000213614	HEXA	TSD	hexosaminidase subunit alpha	protein-coding
56230	chr12	111824151	111824850	+	0	NA	Intergenic	HERVK3-int|LTR|ERVK	17430	NR_152606	51275		NR_015404	ENSG00000234608	MAPKAPK5-AS1	C12orf47|MAAS	MAPKAPK5 antisense RNA 1	ncRNA
173026	chr4	4541371	4542630	+	0	NA	promoter-TSS (NR_037888)	promoter-TSS (NR_037888)	48	NM_016930	53407		NM_016930	ENSG00000168818	STX18	Ufe1	syntaxin 18	protein-coding
180057	chr5	1081871	1082030	+	0	NA	intron (NM_006598, intron 8 of 23).2	intron (NM_006598, intron 8 of 23).2	-18976	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
38712	chr11	46674171	46674330	+	0	NA	non-coding (NR_144422, exon 18 of 18)	non-coding (NR_144422, exon 18 of 18)	26369	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
101972	chr17	74740271	74740750	+	0	NA	intron (NM_001163990, intron 1 of 7)	intron (NM_001163990, intron 1 of 7)	3254	NM_001006638	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
149127	chr21	17686371	17686730	+	0	NA	Intergenic	L1PB1|LINE|L1	-73649	NM_001130914	10950		NM_006806	ENSG00000154640	BTG3	ANA|ANA/BTG3|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding
179716	chr5	52451	52550	+	0	NA	Intergenic	AluSx|SINE|Alu	-39668	NM_052909	153478		NM_052909	ENSG00000153404	PLEKHG4B	ARHGEF48	pleckstrin homology and RhoGEF domain containing G4B	protein-coding
86413	chr16	66832651	66832950	+	0	NA	Intergenic	Intergenic	-1824	NM_001018160	8883		NM_003905	ENSG00000159593	NAE1	A-116A10.1|APPBP1|HPP1|NEDFIH|ula-1	NEDD8 activating enzyme E1 subunit 1	protein-coding
44259	chr11	102007821	102008100	+	0	NA	Intergenic	Intergenic	-39477	NM_032930	85016		NM_032930	ENSG00000137691	CFAP300	C11orf70|CILD38|DNAAF17|FBB5	cilia and flagella associated protein 300	protein-coding
87216	chr16	69469871	69470430	+	0	NA	Intergenic	Intergenic	45531	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
198168	chr6	95579201	95579700	+	0	NA	intron (NM_024641, intron 1 of 4)	intron (NM_024641, intron 1 of 4)	1915	NM_024641	79694		NM_024641	ENSG00000172469	MANEA	ENDO|hEndo	mannosidase endo-alpha	protein-coding
237245	chrX	110145821	110146080	+	0	NA	intron (NM_001353849, intron 5 of 7)	X7A_LINE|LINE|CR1	63832	NR_039774	100616491		NR_039774	ENSG00000265584	MIR3978	-	microRNA 3978	ncRNA
77031	chr15	78743701	78743900	+	0	NA	Intergenic	Intergenic	-8237	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
52546	chr12	56136571	56136930	+	0	NA	exon (NM_001184796, exon 16 of 31)	exon (NM_001184796, exon 16 of 31)	8483	NM_015292	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
214720	chr7	151016851	151017430	+	0	NA	exon (NM_001317056, exon 9 of 14)	exon (NM_001317056, exon 9 of 14)	7359	NM_001317056	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
51142	chr12	50120701	50120900	+	0	NA	TTS (NM_001257134)	TTS (NM_001257134)	8564	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
108273	chr18	63292351	63293550	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	26819	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
195830	chr6	41335721	41336180	+	0	NA	intron (NM_001199510, intron 1 of 5)	intron (NM_001199510, intron 1 of 5)	342	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
37803	chr11	32870721	32871000	+	0	NA	Intergenic	LTR38-int|LTR|ERV1	-21951	NM_001076786	79832		NM_024774	ENSG00000060749	QSER1	-	glutamine and serine rich 1	protein-coding
227434	chr9	90079071	90079230	+	0	NA	Intergenic	Intergenic	-37651	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
228622	chr9	105672871	105673030	+	0	NA	Intergenic	MER57B1|LTR|ERV1	10493	NM_005421	6887		NM_005421	ENSG00000186051	TAL2	-	TAL bHLH transcription factor 2	protein-coding
202621	chr6	158742871	158743030	+	0	NA	intron (NM_001318745, intron 8 of 14)	L1MEg|LINE|L1	21803	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
69745	chr14	98937821	98938280	+	0	NA	Intergenic	Intergenic	226437	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
194391	chr6	32996401	32996600	+	0	NA	Intergenic	L1MC5a|LINE|L1	13091	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
231274	chr9	130017701	130018350	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluYm1|SINE|Alu	25164	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
116470	chr19	18095701	18096280	+	0	NA	intron (NM_001290024, intron 1 of 17)	AluJb|SINE|Alu	-1788	NM_015016	23031		NM_015016	ENSG00000099308	MAST3	DEE108	microtubule associated serine/threonine kinase 3	protein-coding
217340	chr8	27610651	27611330	+	0	NA	promoter-TSS (NR_106902)	promoter-TSS (NR_106902)	-239	NR_106902	102465508		NR_106902	ENSG00000284280	MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
175631	chr4	76212371	76214550	+	0	NA	promoter-TSS (NM_001242936)	promoter-TSS (NM_001242936)	364	NM_001204255	950		NM_005506	ENSG00000138760	SCARB2	AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII	scavenger receptor class B member 2	protein-coding
17065	chr1	156108871	156109200	+	0	NA	intron (NM_001282625, intron 3 of 12)	MIRb|SINE|MIR	-5676	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
45746	chr11	119150851	119151150	+	0	NA	intron (NM_001142505, intron 2 of 14)	intron (NM_001142505, intron 2 of 14)	1411	NM_001142505	64137		NM_022169	ENSG00000172350	ABCG4	WHITE2	ATP binding cassette subfamily G member 4	protein-coding
233294	chr9	137319901	137320280	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-17819	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
169539	chr3	170165701	170166100	+	0	NA	intron (NM_001308116, intron 4 of 14)	FLAM_A|SINE|Alu	15833	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
217875	chr8	37854751	37855280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5154	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
44779	chr11	112518401	112518600	+	0	NA	intron (NR_120559, intron 2 of 2)	L1PA16|LINE|L1	34155	NR_120560	101928823		NR_120559	ENSG00000254968	LINC02763	-	long intergenic non-protein coding RNA 2763	ncRNA
62799	chr13	109700201	109700400	+	0	NA	Intergenic	Intergenic	-27974	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
164708	chr3	67790101	67790400	+	0	NA	intron (NR_109992, intron 3 of 6)	LTR16A1|LTR|ERVL	135553	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
96683	chr17	41260771	41261030	+	0	NA	Intergenic	L1PA8|LINE|L1	-4478	NM_001277331	100507608		NM_001277331	ENSG00000212659	KRTAP9-6	KAP9.6|KRTAP9.6|KRTAP9L2	keratin associated protein 9-6	protein-coding
190399	chr5	179804901	179805250	+	0	NA	intron (NM_014275, intron 1 of 14)	intron (NM_014275, intron 1 of 14)	-1318	NM_001142298	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
94055	chr17	27355501	27355700	+	0	NA	Intergenic	LTR88c|LTR|Gypsy?	61486	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
122838	chr19	50433151	50433650	+	0	NA	intron (NM_004533, intron 1 of 27)	AluSx|SINE|Alu	508	NM_004533	4606		NM_004533	ENSG00000086967	MYBPC2	MYBPC|MYBPCF|fsMyBP-C	myosin binding protein C2	protein-coding
5109	chr1	24863501	24863700	+	0	NA	Intergenic	Intergenic	55816	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
12293	chr1	100814951	100815250	+	0	NA	Intergenic	L1PB1|LINE|L1	79742	NM_001033025	2135		NM_001439	ENSG00000162694	EXTL2	EXTR2	exostosin like glycosyltransferase 2	protein-coding
131226	chr2	95163951	95164330	+	0	NA	Intergenic	Intergenic	-1669	NM_001017396	7549		NM_021088	ENSG00000275111	ZNF2	A1-5|ZNF661|Zfp661	zinc finger protein 2	protein-coding
90437	chr17	1359651	1360030	+	0	NA	intron (NR_024058, intron 5 of 6)	(TG)n|Simple_repeat|Simple_repeat	40382	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
17090	chr1	156137221	156137850	+	0	NA	intron (NM_170708, intron 9 of 10)	intron (NM_170708, intron 9 of 10)	11365	NM_001257374	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
170808	chr3	189272801	189273080	+	0	NA	intron (NM_198485, intron 4 of 5)	intron (NM_198485, intron 4 of 5)	-32346	NR_046722	100874027		NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
211844	chr7	108573071	108573300	+	0	NA	exon (NM_012328, exon 3 of 3)	exon (NM_012328, exon 3 of 3)	3311	NM_012328	4189		NM_012328	ENSG00000128590	DNAJB9	ERdj4|MDG-1|MDG1|MST049|MSTP049	DnaJ heat shock protein family (Hsp40) member B9	protein-coding
194897	chr6	34690821	34691250	+	0	NA	intron (NM_022758, intron 1 of 3)	AluY|SINE|Alu	-5119	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
196633	chr6	44274221	44274750	+	0	NA	intron (NM_001137560, intron 2 of 2)	intron (NM_001137560, intron 2 of 2)	4035	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
15345	chr1	149927451	149928630	+	0	NA	promoter-TSS (NM_005850)	promoter-TSS (NM_005850)	-237	NM_005850	10262		NM_005850	ENSG00000143368	SF3B4	AFD1|Hsh49|SAP49|SF3b49	splicing factor 3b subunit 4	protein-coding
120768	chr19	45429871	45430050	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluSx|SINE|Alu	-6043	NM_001369408	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
99910	chr17	56913421	56914950	+	0	NA	promoter-TSS (NM_005082)	promoter-TSS (NM_005082)	-136	NM_005082	7706		NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
103992	chr17	80038121	80038680	+	0	NA	intron (NM_001330508, intron 2 of 10)	AluSx|SINE|Alu	1758	NM_017950	55036		NM_017950	ENSG00000141519	CCDC40	CFAP172|CILD15|FAP172	coiled-coil domain 40 molecular ruler complex subunit	protein-coding
215986	chr8	8866521	8866980	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	26880	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
198072	chr6	90236101	90236500	+	0	NA	intron (NM_001170794, intron 1 of 6)	L2c|LINE|L2	60543	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
41033	chr11	65448121	65449730	+	0	NA	Intergenic	Intergenic	4467	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
2730	chr1	10662871	10663630	+	0	NA	intron (NM_017766, intron 5 of 15)	intron (NM_017766, intron 5 of 15)	133396	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
203142	chr6	166954371	166954600	+	0	NA	intron (NM_003730, intron 1 of 8)	MIR|SINE|MIR	2065	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
90955	chr17	2662171	2662600	+	0	NA	intron (NM_000430, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	30534	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
42005	chr11	67400251	67400650	+	0	NA	intron (NM_206873, intron 2 of 5)	intron (NM_206873, intron 2 of 5)	1408	NM_001008709	5499		NM_002708	ENSG00000172531	PPP1CA	PP-1A|PP1A|PP1alpha|PPP1A	protein phosphatase 1 catalytic subunit alpha	protein-coding
182963	chr5	71451121	71451380	+	0	NA	Intergenic	AluY|SINE|Alu	-4401	NM_018429	55814		NM_018429	ENSG00000145734	BDP1	DFNB112|HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
236857	chrX	79368251	79368350	+	0	NA	promoter-TSS (NM_001171581)	promoter-TSS (NM_001171581)	-748	NM_001171581	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
106859	chr18	24061721	24062380	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-46590	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
143519	chr20	31544651	31545100	+	0	NA	intron (NM_178580, intron 3 of 12)	intron (NM_178580, intron 3 of 12)	28388	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
194436	chr6	33143021	33143450	+	0	NA	promoter-TSS (NR_138084)	promoter-TSS (NR_138084)	-89	NR_138084	414768		NR_138084		HCG24	-	HLA complex group 24	ncRNA
225107	chr9	33447201	33448680	+	0	NA	promoter-TSS (NM_001318144)	promoter-TSS (NM_001318144)	-347	NM_001318144	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
76994	chr15	78304021	78304280	+	0	NA	Intergenic	MER52C|LTR|ERV1	-4541	NM_001303247	80349		NM_025234	ENSG00000140395	SKIC8	REC14|SKI8|WDR61	SKI8 subunit of superkiller complex	protein-coding
146577	chr20	50087201	50087800	+	0	NA	intron (NM_001257394, intron 1 of 2)	intron (NM_001257394, intron 1 of 2)	25650	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
214173	chr7	144831501	144831900	+	0	NA	intron (NR_146934, intron 1 of 6)	intron (NR_146934, intron 1 of 6)	4240	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
125735	chr2	20663351	20663450	+	0	NA	Intergenic	L3|LINE|CR1	-3744	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
133097	chr2	112625671	112625900	+	0	NA	Intergenic	Intergenic	18395	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
203099	chr6	166417001	166417800	+	0	NA	intron (NM_021135, intron 19 of 20)	MLT2D|LTR|ERVL	-34460	NR_164831	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
196734	chr6	45320271	45320630	+	0	NA	intron (NM_001350329, intron 2 of 10)	AluJb|SINE|Alu	-7867	NM_001015051	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
176219	chr4	84498321	84498850	+	0	NA	5' UTR (NM_006168, exon 1 of 3)	5' UTR (NM_006168, exon 1 of 3)	707	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
35724	chr11	1990371	1990730	+	0	NA	promoter-TSS (NR_126400)	promoter-TSS (NR_126400)	-546	NR_126400	104355220		NR_126400		LINC01219	-	long intergenic non-protein coding RNA 1219	ncRNA
152155	chr22	20018401	20018930	+	0	NA	intron (NM_001322174, intron 1 of 7)	intron (NM_001322174, intron 1 of 7)	1665	NM_001322174	128989		NM_152906	ENSG00000183597	TANGO2	C22orf25|MECRCN	transport and golgi organization 2 homolog	protein-coding
173277	chr4	7056571	7057030	+	0	NA	3' UTR (NM_152293, exon 2 of 2)	3' UTR (NM_152293, exon 2 of 2)	-10569	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
234121	chrX	9677051	9677600	+	0	NA	intron (NM_001139467, intron 4 of 16)	intron (NM_001139467, intron 4 of 16)	88522	NM_000273	4935		NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
129852	chr2	72920121	72921050	+	0	NA	intron (NM_004097, intron 1 of 2)	CpG-16147	3066	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
13100	chr1	111617971	111618330	+	0	NA	non-coding (NR_160737, exon 2 of 2)	non-coding (NR_160737, exon 2 of 2)	-1633	NM_002884	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
125869	chr2	24520971	24521680	+	0	NA	intron (NM_001362954, intron 1 of 23)	L1MA9|LINE|L1	29448	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
36481	chr11	6251951	6252050	+	0	NA	Intergenic	Intergenic	-7838	NM_001318029	887		NM_176875	ENSG00000110148	CCKBR	CCK-2R|CCK-B|CCK2R|GASR	cholecystokinin B receptor	protein-coding
165307	chr3	86990851	86991330	+	0	NA	promoter-TSS (NM_001320494)	promoter-TSS (NM_001320494)	59	NM_001320493	389136		NM_016206	ENSG00000206538	VGLL3	VGL-3|VGL3	vestigial like family member 3	protein-coding
54339	chr12	89673601	89673800	+	0	NA	intron (NM_001366524, intron 1 of 21)	Tigger16a|DNA|TcMar-Tigger	35138	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
9660	chr1	52640971	52641530	+	0	NA	intron (NR_135156, intron 2 of 5)	MER21C|LTR|ERVL	8082	NR_135157	348378		NM_001042693	ENSG00000182183	SHISAL2A	FAM159A|PRO7171|WWLS2783	shisa like 2A	protein-coding
111829	chr19	4515171	4515330	+	0	NA	intron (NM_001367868, intron 4 of 7)	intron (NM_001367868, intron 4 of 7)	3236	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
74162	chr15	55285351	55285880	+	0	NA	intron (NM_183235, intron 1 of 6)	intron (NM_183235, intron 1 of 6)	4198	NM_183235	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
13468	chr1	114571071	114571730	+	0	NA	intron (NM_005872, intron 4 of 6)	AluJb|SINE|Alu	10215	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
1853	chr1	6355951	6356450	+	0	NA	intron (NM_007274, intron 1 of 8)	MLT1C|LTR|ERVL-MaLR	2729	NM_181866	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
46350	chr11	125871401	125871700	+	0	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-12064	NM_145014	219844		NM_145014	ENSG00000198331	HYLS1	HLS	HYLS1 centriolar and ciliogenesis associated	protein-coding
223526	chr8	144113721	144113980	+	0	NA	exon (NM_001316309, exon 17 of 24)	exon (NM_001316309, exon 17 of 24)	6111	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
238326	chrX	149531551	149531850	+	0	NA	intron (NR_027455, intron 7 of 9)	intron (NR_027455, intron 7 of 9)	8052	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
146320	chr20	49218961	49220550	+	0	NA	promoter-TSS (NM_001319135)	promoter-TSS (NM_001319135)	339	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
175709	chr4	77157801	77158950	+	0	NA	intron (NM_004354, intron 1 of 7)	CpG	1168	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
86849	chr16	67929901	67930730	+	0	NA	TTS (NM_006742)	TTS (NM_006742)	1547	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
122467	chr19	49531101	49531780	+	0	NA	intron (NM_020650, intron 2 of 6)	L2a|LINE|L2	3437	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
66734	chr14	64499301	64500230	+	0	NA	5' UTR (NM_001354684, exon 1 of 4)	5' UTR (NM_001354684, exon 1 of 4)	688	NM_001354683	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
156321	chr22	40648821	40649080	+	0	NA	Intergenic	AluSg|SINE|Alu	-12231	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
37071	chr11	12598701	12598980	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-75581	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
147056	chr20	53685671	53686380	+	0	NA	Intergenic	Intergenic	77671	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
148969	chr21	13875451	13875750	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	-27236	NR_026755	54055		NR_026755	ENSG00000290541	CYP4F29P	4F-se4[6:7:8]|C21orf15|CYP4F-se4[6:7:8]|CYP4F3LP	cytochrome P450 family 4 subfamily F member 29, pseudogene	pseudo
63043	chr13	113002201	113002400	+	0	NA	intron (NM_001320815, intron 1 of 30)	intron (NM_001320815, intron 1 of 30)	586	NM_001320815	23263		NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
73247	chr15	41779651	41779950	+	0	NA	intron (NR_049762, intron 2 of 28)	intron (NR_049762, intron 2 of 28)	5316	NR_049762	23005		NM_014994	ENSG00000137802	MAPKBP1	JNKBP-1|JNKBP1|NPHP20	mitogen-activated protein kinase binding protein 1	protein-coding
150159	chr21	38831401	38832250	+	0	NA	Intergenic	Intergenic	-25714	NR_109926	101928398		NR_109926	ENSG00000287082	LOC101928398	-	uncharacterized LOC101928398	ncRNA
203393	chr6	170612221	170612690	+	0	NA	Intergenic	CpG	-27763	NM_001199461	5134		NM_002598	ENSG00000071994	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
121594	chr19	47351401	47351950	+	0	NA	intron (NM_014681, intron 1 of 16)	MLT1K|LTR|ERVL-MaLR	2360	NM_014681	9704		NM_014681	ENSG00000134815	DHX34	DDX34|HRH1	DExH-box helicase 34	protein-coding
59051	chr13	20702671	20705400	+	0	NA	exon (NM_001385221, exon 2 of 3)	exon (NM_001385221, exon 2 of 3)	336	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
185374	chr5	127739271	127739530	+	0	NA	intron (NM_001317938, intron 2 of 6)	L1PA2|LINE|L1	36009	NM_001317938	728586		NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
27383	chr10	31083621	31083910	+	0	NA	Intergenic	Intergenic	-51828	NM_001143766	220929		NM_182755	ENSG00000183621	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
228400	chr9	99149751	99149850	+	0	NA	3' UTR (NM_001306210, exon 9 of 9)	3' UTR (NM_001306210, exon 9 of 9)	44687	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
190093	chr5	177819651	177819950	+	0	NA	Intergenic	L1M4b|LINE|L1	-10293	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
204625	chr7	5384621	5384880	+	0	NA	intron (NM_001080495, intron 5 of 29)	intron (NM_001080495, intron 5 of 29)	38796	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
192395	chr6	24777401	24777700	+	0	NA	intron (NM_015895, intron 2 of 6)	L1MC5a|LINE|L1	2137	NM_001251991	51053		NM_015895	ENSG00000112312	GMNN	Gem|MGORS6	geminin DNA replication inhibitor	protein-coding
88993	chr16	87948021	87948500	+	0	NA	promoter-TSS (NM_001384936)	promoter-TSS (NM_001384936)	-978	NM_001384918	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
72288	chr15	30984951	30985250	+	0	NA	intron (NM_017762, intron 2 of 15).2	intron (NM_017762, intron 2 of 15).2	6528	NM_017762	54893		NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
81765	chr16	11500601	11500880	+	0	NA	intron (NM_001370704, intron 10 of 66)	intron (NM_001370704, intron 10 of 66)	26507	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
88822	chr16	87414101	87414530	+	0	NA	intron (NM_015144, intron 10 of 12)	CpG	21979	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
24269	chr1	236414821	236415100	+	0	NA	intron (NM_080738, intron 3 of 5)	MLT1K|LTR|ERVL-MaLR	19547	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
75422	chr15	65781701	65782530	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	10178	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
201046	chr6	142156271	142156900	+	0	NA	intron (NM_001286372, intron 1 of 5)	intron (NM_001286372, intron 1 of 5)	9322	NM_016485	51534		NM_016485	ENSG00000009844	VTA1	6orf55|C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1	vesicle trafficking 1	protein-coding
20471	chr1	198614271	198615180	+	0	NA	Intergenic	Intergenic	-24243	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
72939	chr15	40440401	40442730	+	0	NA	intron (NR_125372, intron 1 of 4)	CpG	612	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
91319	chr17	4364751	4365800	+	0	NA	intron (NM_003342, intron 1 of 5)	intron (NM_003342, intron 1 of 5)	1399	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
26025	chr10	12346051	12346350	+	0	NA	Intergenic	AluSz|SINE|Alu	-3347	NM_020397	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
95311	chr17	35581871	35582430	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3579	NM_000286	5193		NM_000286	ENSG00000108733	PEX12	PAF-3|PBD3A	peroxisomal biogenesis factor 12	protein-coding
81790	chr16	11531901	11532830	+	0	NA	Intergenic	Intergenic	-5118	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
35212	chr11	815901	816880	+	0	NA	Intergenic	Intergenic	-2524	NM_020376	57104		NM_020376	ENSG00000177666	PNPLA2	1110001C14Rik|ATGL|FP17548|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin like phospholipase domain containing 2	protein-coding
120796	chr19	45457521	45457780	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6103	NM_001369413	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
199885	chr6	127820421	127820680	+	0	NA	intron (NM_001010923, intron 3 of 5).2	intron (NM_001010923, intron 3 of 5).2	34638	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
10158	chr1	61053051	61053150	+	0	NA	Intergenic	Intergenic	-24127	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
87398	chr16	70522921	70525300	+	0	NA	promoter-TSS (NM_001365426)	promoter-TSS (NM_001365426)	294	NM_012426	23450		NM_012426	ENSG00000189091	SF3B3	RSE1|SAP130|SF3b130|STAF130	splicing factor 3b subunit 3	protein-coding
52278	chr12	54560021	54561380	+	0	NA	promoter-TSS (NM_001165975)	promoter-TSS (NM_001165975)	-765	NM_001165975	5153		NM_000924	ENSG00000123360	PDE1B	HEL-S-79p|PDE1B1|PDES1B	phosphodiesterase 1B	protein-coding
199331	chr6	113858571	113859500	+	0	NA	intron (NM_002356, intron 1 of 1)	CpG	1690	NM_002356	4082		NM_002356	ENSG00000277443	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
133108	chr2	112644951	112647050	+	0	NA	promoter-TSS (NM_005415)	promoter-TSS (NM_005415)	61	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
91257	chr17	3971471	3971630	+	0	NA	Intergenic	Intergenic	-5553	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
160591	chr3	31220371	31221130	+	0	NA	Intergenic	L1MB2|LINE|L1	-58963	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
24809	chr10	142301	142500	+	0	NA	intron (NM_001370102, intron 1 of 14)	intron (NM_001370102, intron 1 of 14)	6591	NM_001370102	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
199004	chr6	110963771	110964130	+	0	NA	intron (NM_138408, intron 5 of 5)	AluSx|SINE|Alu	5244	NM_138408	112495		NM_138408	ENSG00000155115	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC subunit 6	protein-coding
28988	chr10	63264801	63265700	+	0	NA	intron (NM_001322258, intron 2 of 24)	intron (NM_001322258, intron 2 of 24)	3973	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
92520	chr17	8914571	8914730	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	-2133	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
207320	chr7	44038651	44040000	+	0	NA	intron (NR_072981, intron 1 of 2)	intron (NR_072981, intron 1 of 2)	276	NR_015401	255031		NR_015401		LINC00957	-	long intergenic non-protein coding RNA 957	ncRNA
20270	chr1	194134321	194134580	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	829705	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
103896	chr17	79802051	79802230	+	0	NA	Intergenic	CpG-11773	-5063	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
118871	chr19	38665671	38666100	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	18236	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
86919	chr16	68081171	68081830	+	0	NA	Intergenic	Intergenic	-3870	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
206056	chr7	27157501	27157900	+	0	NA	Intergenic	Intergenic	-1025	NM_006896	3204		NM_006896	ENSG00000122592	HOXA7	ANTP|HOX1|HOX1.1|HOX1A	homeobox A7	protein-coding
22637	chr1	223715501	223715700	+	0	NA	intron (NM_001748, intron 1 of 20)	intron (NM_001748, intron 1 of 20)	3061	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
12744	chr1	109600701	109600900	+	0	NA	TTS (NM_006496)	TTS (NM_006496)	1907	NR_029583	406974		NR_029583	ENSG00000284443	MIR197	MIRN197|miR-197|miRNA197	microRNA 197	ncRNA
153387	chr22	24592601	24593430	+	0	NA	promoter-TSS (NM_207644)	promoter-TSS (NM_207644)	58	NM_207644	388886		NM_207644	ENSG00000178026	LRRC75B	C22orf36|FAM211B	leucine rich repeat containing 75B	protein-coding
145674	chr20	44983171	44983700	+	0	NA	intron (NM_006282, intron 4 of 10)	AluJr|SINE|Alu	16923	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
189524	chr5	173698801	173699100	+	0	NA	intron (NR_146727, intron 1 of 2)	MIR|SINE|MIR	9491	NR_146727	105377736		NR_146727	ENSG00000253428	LINC01942	-	long intergenic non-protein coding RNA 1942	ncRNA
10851	chr1	77967471	77967830	+	0	NA	non-coding (NR_146540, exon 4 of 23)	non-coding (NR_146540, exon 4 of 23)	11422	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
4042	chr1	18955021	18956100	+	0	NA	intron (NM_001136265, intron 1 of 8)	CpG	1116	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
28239	chr10	45469951	45470880	+	0	NA	intron (NM_001282866, intron 3 of 7)	MLT1E2|LTR|ERVL-MaLR	-17294	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
201824	chr6	150028101	150028300	+	0	NA	Intergenic	Intergenic	-2668	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
190480	chr5	180294701	180295580	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-3057	NM_001135044	5601		NM_002752	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
138823	chr2	216352571	216353780	+	0	NA	intron (NM_020814, intron 1 of 3)	intron (NM_020814, intron 1 of 3)	19308	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
45558	chr11	118785251	118785630	+	0	NA	intron (NM_004397, intron 2 of 13)	FLAM_C|SINE|Alu	5508	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
225098	chr9	33423601	33424000	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-21118	NM_001318156	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
426	chr1	1087621	1088080	+	0	NA	intron (NM_017891, intron 4 of 9)	CpG	-13544	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
60663	chr13	42994201	42994700	+	0	NA	Intergenic	MIRc|SINE|MIR	-2209	NM_001331228	94240		NM_033255	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1	protein-coding
205655	chr7	22827571	22827900	+	0	NA	Intergenic	MER66A|LTR|ERV1	-4886	NR_168014	54543		NM_019059	ENSG00000196683	TOMM7	GMPGS|TOM7	translocase of outer mitochondrial membrane 7	protein-coding
174342	chr4	38689571	38689930	+	0	NA	exon (NM_016531, exon 4 of 6)	exon (NM_016531, exon 4 of 6)	-25122	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
213122	chr7	131330301	131330780	+	0	NA	intron (NM_001321316, intron 1 of 17)	MIR|SINE|MIR	2664	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
129956	chr2	73931271	73932250	+	0	NA	intron (NR_134895, intron 1 of 2)	intron (NR_134895, intron 1 of 2)	4880	NM_080918	1716		NM_001929	ENSG00000114956	DGUOK	MTDPS3|NCPH|NCPH1|PEOB4|dGK	deoxyguanosine kinase	protein-coding
21120	chr1	203631321	203631580	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	3513	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
231525	chr9	131427371	131427730	+	0	NA	intron (NM_013318, intron 1 of 31)	AluY|SINE|Alu	33464	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
9755	chr1	53324071	53324230	+	0	NA	intron (NM_017522, intron 2 of 15)	intron (NM_017522, intron 2 of 15)	3920	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
172522	chr4	2287171	2287530	+	0	NA	intron (NM_020972, intron 8 of 12)	intron (NM_020972, intron 8 of 12)	-25241	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
32325	chr10	102225871	102227530	+	0	NA	intron (NM_152310, intron 1 of 3)	intron (NM_152310, intron 1 of 3)	401	NM_152310	83401		NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
78132	chr15	90386321	90386780	+	0	NA	Intergenic	Intergenic	-1692	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
205905	chr7	25181571	25181730	+	0	NA	Intergenic	LTR45C|LTR|ERV1	-1296	NM_138811	136895		NM_138811	ENSG00000153790	SPMIP4	C7orf31	sperm microtubule inner protein 4	protein-coding
58369	chr12	131712021	131712280	+	0	NA	intron (NM_001261411, intron 1 of 18)	intron (NM_001261411, intron 1 of 18)	1060	NM_001261411	6433		NM_004592	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor SWAP	protein-coding
36280	chr11	3801521	3801780	+	0	NA	intron (NR_027017, intron 1 of 7)	AluYm1|SINE|Alu	3752	NM_001346401	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
103437	chr17	78262051	78262650	+	0	NA	intron (NR_073178, intron 6 of 6)	AluSz|SINE|Alu	14034	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
215882	chr8	7841371	7841800	+	0	NA	TTS (NM_001040702).4	TTS (NM_001040702).4	5114	NM_001040702	503618		NM_001040702	ENSG00000177023	DEFB104B	BD-4|DEFB-4|hBD-4	defensin beta 104B	protein-coding
233439	chr9	137618051	137619730	+	0	NA	promoter-TSS (NM_001354263)	promoter-TSS (NM_001354263)	5	NR_122035	85026		NM_032937	ENSG00000203993	ARRDC1-AS1	C9orf37	ARRDC1 antisense RNA 1	ncRNA
229100	chr9	114381841	114382250	+	0	NA	intron (NM_030767, intron 1 of 21)	L2c|LINE|L2	5937	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
145773	chr20	45362551	45364050	+	0	NA	non-coding (NR_003189, exon 1 of 6)	non-coding (NR_003189, exon 1 of 6)	131	NR_003189	767557		NR_003189	ENSG00000254806	SYS1-DBNDD2	C20orf169-DBNDD2	SYS1-DBNDD2 readthrough (NMD candidate)	ncRNA
160417	chr3	28285251	28285350	+	0	NA	intron (NM_001331189, intron 3 of 4)	intron (NM_001331189, intron 3 of 4)	43681	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
186620	chr5	138536601	138537300	+	0	NA	intron (NM_001291975, intron 2 of 11)	intron (NM_001291975, intron 2 of 11)	4761	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
132746	chr2	109610871	109611030	+	0	NA	intron (NM_001321501, intron 1 of 9)	L1MD1|LINE|L1	2717	NM_001321515	151011		NM_144710	ENSG00000186522	SEPTIN10	SEPT10|Septin-10	septin 10	protein-coding
185241	chr5	123422671	123424480	+	0	NA	promoter-TSS (NM_001166226)	promoter-TSS (NM_001166226)	17	NM_153223	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
129606	chr2	70097621	70098330	+	0	NA	Intergenic	AluSx1|SINE|Alu	10498	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
32473	chr10	102656421	102657580	+	0	NA	exon (NM_001345950, exon 5 of 5)	exon (NM_001345950, exon 5 of 5)	12505	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
75525	chr15	66504451	66506430	+	0	NA	promoter-TSS (NM_000968)	promoter-TSS (NM_000968)	114	NM_017975	55055		NM_017975	ENSG00000174442	ZWILCH	KNTC1AP|hZwilch	zwilch kinetochore protein	protein-coding
1456	chr1	2659851	2660480	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-27149	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
192672	chr6	26225221	26226050	+	0	NA	TTS (NM_003532)	TTS (NM_003532)	500	NM_003532	8353		NM_003532	ENSG00000274750	H3C6	H3.1|H3/d|H3C1|H3C10|H3C11|H3C12|H3C2|H3C3|H3C4|H3C7|H3C8|H3FD|HIST1H3E	H3 clustered histone 6	protein-coding
59763	chr13	30128321	30128880	+	0	NA	Intergenic	Intergenic	-19725	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
47922	chr12	6777321	6777730	+	0	NA	intron (NM_002286, intron 6 of 7)	intron (NM_002286, intron 6 of 7)	5005	NM_002286	3902		NM_002286	ENSG00000089692	LAG3	CD223	lymphocyte activating 3	protein-coding
99840	chr17	55348651	55349150	+	0	NA	Intergenic	Intergenic	72935	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
47893	chr12	6740371	6740530	+	0	NA	Intergenic	L1MD2|LINE|L1	12466	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
231847	chr9	132799201	132799530	+	0	NA	intron (NM_001371771, intron 10 of 12)	intron (NM_001371771, intron 10 of 12)	78919	NM_001317958	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
165815	chr3	105823051	105823150	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	44491	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
101849	chr17	74190951	74191050	+	0	NA	Intergenic	Intergenic	-12678	NM_000999	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
5616	chr1	26155051	26155680	+	0	NA	Intergenic	Intergenic	-3714	NM_024869	79927		NM_024869	ENSG00000197245	FAM110D	GRRP1	family with sequence similarity 110 member D	protein-coding
226665	chr9	75019451	75019900	+	0	NA	intron (NM_152420, intron 1 of 7)	MER4D|LTR|ERV1	7476	NM_001320497	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
80587	chr16	2896721	2896980	+	0	NA	intron (NM_138439, intron 3 of 3)	intron (NM_138439, intron 3 of 3)	13635	NM_138439	114984		NM_138439	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
159623	chr3	15276201	15276600	+	0	NA	intron (NM_004844, intron 3 of 8)	MIR3|SINE|MIR	22216	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
53320	chr12	64611851	64612880	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	1870	NM_178169	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
94444	chr17	29179471	29180980	+	0	NA	intron (NM_203318, intron 1 of 40)	CpG	173	NM_001346765	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
169300	chr3	158643101	158643300	+	0	NA	Intergenic	MER51A|LTR|ERV1	-1327	NR_164499	85476		NM_024996	ENSG00000168827	GFM1	COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1|mtEF-G1	G elongation factor mitochondrial 1	protein-coding
151632	chr22	16558501	16558780	+	0	NA	Intergenic	(CAAGCCAGC)n|Simple_repeat|Simple_repeat	34170	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
174193	chr4	36385701	36386600	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	40278	NR_031701	100313806		NR_031701	ENSG00000283207	MIR1255B1	MIR1255B-1|MIRN1255B1	microRNA 1255b-1	ncRNA
213297	chr7	135127501	135127700	+	0	NA	intron (NM_178563, intron 16 of 16)	L1PA8A|LINE|L1	-20472	NM_018295	55281		NM_018295	ENSG00000146859	TMEM140	-	transmembrane protein 140	protein-coding
60009	chr13	32526621	32527030	+	0	NA	intron (NM_001278432, intron 3 of 9)	(T)n|Simple_repeat|Simple_repeat	11970	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
177895	chr4	128916721	128917180	+	0	NA	intron (NM_144643, intron 18 of 20)	MER74A|LTR|ERVL	105106	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
159724	chr3	15792521	15793180	+	0	NA	intron (NM_001349285, intron 2 of 2)	L1MA1|LINE|L1	5129	NM_001349284	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
144232	chr20	34401701	34402100	+	0	NA	intron (NM_001257138, intron 3 of 23)	intron (NM_001257138, intron 3 of 23)	38627	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
214645	chr7	150751871	150752030	+	0	NA	Intergenic	Intergenic	14602	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
40760	chr11	64848361	64849180	+	0	NA	Intergenic	Intergenic	-4117	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
10396	chr1	65064471	65065250	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	2886	NM_001321853	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
48578	chr12	10296351	10296450	+	0	NA	intron (NM_001351060, intron 2 of 8)	AluY|SINE|Alu	-8046	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
103868	chr17	79747701	79748500	+	0	NA	Intergenic	CpG	17157	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
180112	chr5	1274001	1274200	+	0	NA	intron (NM_001193376, intron 6 of 14)	intron (NM_001193376, intron 6 of 14)	20968	NM_198253	7015		NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
153014	chr22	23218051	23219030	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	38031	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
113094	chr19	8277471	8278000	+	0	NA	Intergenic	AluSz6|SINE|Alu	30623	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
87156	chr16	69316271	69316630	+	0	NA	intron (NM_013245, intron 3 of 10)	intron (NM_013245, intron 3 of 10)	5100	NM_013245	27183		NM_013245	ENSG00000132612	VPS4A	CIMDAG|SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
68181	chr14	76148721	76149380	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2835	NM_001322029	55668		NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G-patch domain containing 2 like	protein-coding
5783	chr1	26535101	26536030	+	0	NA	intron (NM_002953, intron 1 of 21)	intron (NM_002953, intron 1 of 21)	5804	NM_002953	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
137579	chr2	197266351	197266930	+	0	NA	intron (NR_046837, intron 5 of 5)	MIR1_Amn|SINE|MIR	35879	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
143752	chr20	32370951	32371250	+	0	NA	intron (NM_015338, intron 3 of 11)	AluJo|SINE|Alu	12035	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
44119	chr11	96035701	96035900	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-111693	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
34187	chr10	128178251	128178600	+	0	NA	Intergenic	Intergenic	-52002	NM_001145966	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
207577	chr7	44950221	44950680	+	0	NA	Intergenic	L1MB3|LINE|L1	28565	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
39049	chr11	47889801	47890280	+	0	NA	Intergenic	Intergenic	-41496	NM_015231	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
235151	chrX	41110771	41111680	+	0	NA	intron (NM_001039590, intron 1 of 44)	MLT1A0|LTR|ERVL-MaLR	25780	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
162718	chr3	49011221	49011530	+	0	NA	intron (NM_001320547, intron 1 of 5)	AluSx|SINE|Alu	3770	NM_001320547	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
226801	chr9	77150801	77151100	+	0	NA	Intergenic	Intergenic	-26495	NM_015186	23230		NM_015186	ENSG00000197969	VPS13A	BLTP5A|CHAC|CHOREIN	vacuolar protein sorting 13 homolog A	protein-coding
216854	chr8	22614301	22614500	+	0	NA	non-coding (NR_033902, exon 10 of 21)	non-coding (NR_033902, exon 10 of 21)	9358	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
11830	chr1	92877401	92878280	+	0	NA	promoter-TSS (NM_001252271)	promoter-TSS (NM_001252271)	-690	NM_001252271	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
40795	chr11	64897371	64897530	+	0	NA	TTS (NR_106808)	TTS (NR_106808)	987	NR_106808	102466192		NR_106808	ENSG00000274986	MIR6750	hsa-mir-6750	microRNA 6750	ncRNA
123225	chr19	52856851	52858080	+	0	NA	intron (NR_102300, intron 1 of 5)	intron (NR_102300, intron 1 of 5)	154	NR_102299	90333		NM_199132	ENSG00000204604	ZNF468	-	zinc finger protein 468	protein-coding
23013	chr1	226187821	226188080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1209	NM_022735	64746		NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
64909	chr14	35404601	35406030	+	0	NA	promoter-TSS (NM_020529)	promoter-TSS (NM_020529)	-566	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
225066	chr9	33252051	33252150	+	0	NA	TTS (NM_004323)	TTS (NM_004323)	11933	NM_014471	27290		NM_014471	ENSG00000122711	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor Kazal type 4	protein-coding
92671	chr17	11996771	11998100	+	0	NA	promoter-TSS (NM_001303281)	promoter-TSS (NM_001303281)	40	NM_001303281	7566		NM_144680	ENSG00000154957	ZNF18	HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535	zinc finger protein 18	protein-coding
68888	chr14	91333451	91333900	+	0	NA	intron (NM_001080414, intron 10 of 29)	intron (NM_001080414, intron 10 of 29)	-79795	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
16617	chr1	155078321	155079300	+	0	NA	promoter-TSS (NM_004952)	promoter-TSS (NM_004952)	-27	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
211026	chr7	102414951	102416180	+	0	NA	intron (NR_038967, intron 8 of 8)	intron (NR_038967, intron 8 of 8)	-9710	NR_031669	100313829		NR_031669	ENSG00000221510	MIR548O	MIRN548O	microRNA 548o	ncRNA
117045	chr19	18938771	18938930	+	0	NA	exon (NM_004838, exon 3 of 10)	exon (NM_004838, exon 3 of 10)	199	NM_001145724	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
132779	chr2	109890021	109890430	+	0	NA	Intergenic	Intergenic	-8207	NR_027145	100271835		NR_027144	ENSG00000284337	LIMS3-LOC440895	-	LIMS3-LOC440895 readthrough	ncRNA
202777	chr6	159066171	159066330	+	0	NA	Intergenic	Intergenic	-21098	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
72433	chr15	31489721	31490450	+	0	NA	intron (NM_130901, intron 11 of 13)	intron (NM_130901, intron 11 of 13)	163250	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
25739	chr10	9075501	9075700	+	0	NA	Intergenic	Intergenic	177611	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
21731	chr1	206793621	206794030	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-21331	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
32060	chr10	101069801	101070000	+	0	NA	Intergenic	Intergenic	3517	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
8379	chr1	40377201	40377980	+	0	NA	intron (NM_001198978, intron 1 of 9)	intron (NM_001198978, intron 1 of 9)	2957	NM_001198978	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
93004	chr17	17186021	17186950	+	0	NA	3' UTR (NM_001364716, exon 24 of 24)	3' UTR (NM_001364716, exon 24 of 24)	19848	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
139302	chr2	219522451	219523700	+	0	NA	intron (NM_182847, intron 1 of 8)	CpG	8593	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
8947	chr1	44222851	44223650	+	0	NA	intron (NR_110056, intron 3 of 3)	intron (NR_110056, intron 3 of 3)	9779	NM_019100	55929		NM_019100	ENSG00000178028	DMAP1	DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4	DNA methyltransferase 1 associated protein 1	protein-coding
173844	chr4	21789351	21789450	+	0	NA	intron (NM_147182, intron 1 of 8)	intron (NM_147182, intron 1 of 8)	63788	NR_002813	359822		NR_002813	ENSG00000280650	KCNIP4-IT1	NCRNA00099|UM9(5)|UM9-5	KCNIP4 intronic transcript 1	ncRNA
75899	chr15	69857701	69858250	+	0	NA	Intergenic	Intergenic	22741	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
71891	chr15	22489101	22489950	+	0	NA	Intergenic	Intergenic	-5312	NR_002824	400322		NM_001024681	ENSG00000291003	HERC2P2	D15F37S3|MN7	HERC2 pseudogene 2	pseudo
71405	chr14	105532751	105533300	+	0	NA	non-coding (NR_135205, exon 2 of 2)	non-coding (NR_135205, exon 2 of 2)	1170	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
38172	chr11	36323021	36323290	+	0	NA	intron (NM_001160167, intron 1 of 8)	intron (NM_001160167, intron 1 of 8)	26867	NM_001160167	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
62547	chr13	99655751	99656500	+	0	NA	intron (NM_206808, intron 1 of 8)	intron (NM_206808, intron 1 of 8)	13066	NR_036191	100422861		NR_036191	ENSG00000263615	MIR4306	mir-4306	microRNA 4306	ncRNA
88499	chr16	85245601	85246400	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-36958	NR_038859	197196		NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
111074	chr19	3164801	3165700	+	0	NA	Intergenic	AluY|SINE|Alu	-10075	NR_110670	100996351		NR_110670	ENSG00000267551	GNA15-DT	-	GNA15 divergent transcript	ncRNA
56431	chr12	113362251	113362350	+	0	NA	intron (NM_173542, intron 1 of 11)	AluJb|SINE|Alu	3713	NM_173542	196463		NM_173542	ENSG00000151176	PLBD2	P76	phospholipase B domain containing 2	protein-coding
77540	chr15	84737851	84738350	+	0	NA	Intergenic	AluY|SINE|Alu	-10492	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
34389	chr10	132336271	132336430	+	0	NA	promoter-TSS (NM_001309474)	promoter-TSS (NM_001309474)	-990	NM_001309474	80313		NM_030626	ENSG00000148814	LRRC27	-	leucine rich repeat containing 27	protein-coding
32095	chr10	101142051	101142950	+	0	NA	Intergenic	Intergenic	-1234	NR_130724	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
44317	chr11	102389451	102389750	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	42226	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
125619	chr2	19349371	19349530	+	0	NA	TTS (NR_039914)	TTS (NR_039914)	1021	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
71198	chr14	105064811	105066790	+	0	NA	promoter-TSS (NM_013345)	promoter-TSS (NM_013345)	-370	NM_013345	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
208021	chr7	55574021	55574580	+	0	NA	Intergenic	Intergenic	-1798	NM_001321244	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
25568	chr10	7686951	7687600	+	0	NA	Intergenic	Intergenic	-16041	NM_002216	3698		NM_002216	ENSG00000151655	ITIH2	H2P|ITI-HC2|SHAP	inter-alpha-trypsin inhibitor heavy chain 2	protein-coding
222022	chr8	130081901	130082300	+	0	NA	TTS (NR_045385)	TTS (NR_045385)	2668	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
36466	chr11	6143971	6144230	+	0	NA	Intergenic	L1PA3|LINE|L1	26226	NM_001004052	255725		NM_001004052	ENSG00000255307	OR52B2	OR11-70	olfactory receptor family 52 subfamily B member 2	protein-coding
118520	chr19	35998051	35998350	+	0	NA	Intergenic	AluSq2|SINE|Alu	3012	NM_001042631	644096		NM_001042631	ENSG00000205138	SDHAF1	LYRM8|MC2DN2	succinate dehydrogenase complex assembly factor 1	protein-coding
37263	chr11	14657201	14657400	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	13496	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
226307	chr9	68894551	68894850	+	0	NA	intron (NM_001278253, intron 7 of 13)	intron (NM_001278253, intron 7 of 13)	81141	NR_110647	101927069		NR_110647		LOC101927069	-	uncharacterized LOC101927069	ncRNA
167518	chr3	129275871	129276030	+	0	NA	intron (NM_016128, intron 23 of 23)	L1ME4b|LINE|L1	-2882	NM_001370345	56941		NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine binding, ES cell specific	protein-coding
231341	chr9	130240651	130241680	+	0	NA	promoter-TSS (NR_162140)	promoter-TSS (NR_162140)	-222	NR_162140	113219459		NR_162140		MIR12126	-	microRNA 12126	ncRNA
57100	chr12	121048251	121048800	+	0	NA	Intergenic	LTR19C|LTR|ERV1	-9283	NM_198213	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
211277	chr7	102750151	102750250	+	0	NA	intron (NR_146987, intron 1 of 5)	intron (NR_146987, intron 1 of 5)	1201	NR_146979	222234		NM_147194	ENSG00000222011	FAM185A	-	family with sequence similarity 185 member A	protein-coding
186402	chr5	135378171	135378330	+	0	NA	intron (NM_138610, intron 2 of 8)	intron (NM_138610, intron 2 of 8)	20981	NM_138610	9555		NM_004893	ENSG00000113648	MACROH2A1	H2A.y|H2A/y|H2AF12M|H2AFY|MACROH2A1.1|mH2A1|macroH2A1.2	macroH2A.1 histone	protein-coding
126231	chr2	27049471	27051100	+	0	NA	promoter-TSS (NR_046730)	promoter-TSS (NR_046730)	-21	NR_046730	100874031		NR_046730	ENSG00000231636	AGBL5-AS1	-	AGBL5 antisense RNA 1	ncRNA
63312	chr13	113997551	113998050	+	0	NA	intron (NM_001320822, intron 20 of 23).2	intron (NM_001320822, intron 20 of 23).2	-23724	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
87028	chr16	68270401	68270900	+	0	NA	intron (NM_003983, intron 2 of 10)	L1MCc|LINE|L1	6124	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
57468	chr12	122026051	122026430	+	0	NA	intron (NM_020993, intron 1 of 5)	AluY|SINE|Alu	4356	NM_001024808	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
219328	chr8	70212001	70212200	+	0	NA	intron (NM_001321707, intron 4 of 22)	(AT)n|Simple_repeat|Simple_repeat	-140848	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
125787	chr2	23905351	23905450	+	0	NA	intron (NM_001354107, intron 1 of 28)	AluJb|SINE|Alu	21723	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
92869	chr17	16407021	16408350	+	0	NA	Intergenic	Intergenic	-7886	NM_016113	51393		NM_016113	ENSG00000187688	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel subfamily V member 2	protein-coding
224218	chr9	5616351	5616450	+	0	NA	Intergenic	Intergenic	-12707	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
43878	chr11	88338301	88339230	+	0	NA	Intergenic	L2b|LINE|L2	-1029	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
199468	chr6	118283801	118284180	+	0	NA	intron (NM_001029858, intron 6 of 7)	intron (NM_001029858, intron 6 of 7)	198087	NR_134601	105377967		NR_134601		LOC105377967	-	uncharacterized LOC105377967	ncRNA
122929	chr19	50668701	50668900	+	0	NA	exon (NM_016148, exon 23 of 24)	exon (NM_016148, exon 23 of 24)	19355	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
113406	chr19	9538221	9539180	+	0	NA	promoter-TSS (NM_024106)	promoter-TSS (NM_024106)	34	NR_134920	101928238		NR_134920	ENSG00000278611	ZNF426-DT	-	ZNF426 divergent transcript	ncRNA
29927	chr10	73363601	73364000	+	0	NA	Intergenic	AluJb|SINE|Alu	-4936	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
175598	chr4	75697121	75697450	+	0	NA	Intergenic	AluYf1|SINE|Alu	-23802	NM_203504	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
148427	chr20	63963001	63963350	+	0	NA	exon (NM_020713, exon 12 of 17)	exon (NM_020713, exon 12 of 17)	6755	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
16952	chr1	155930051	155930450	+	0	NA	intron (NM_014949, intron 2 of 13)	intron (NM_014949, intron 2 of 13)	4163	NM_014949	22889		NM_014949	ENSG00000132680	KHDC4	BLOM7|KIAA0907|SNORA80EHG	KH domain containing 4, pre-mRNA splicing factor	protein-coding
215750	chr8	1969771	1969930	+	0	NA	Intergenic	AluJb|SINE|Alu	-1547	NR_126346	104266957		NR_126346	ENSG00000253696	KBTBD11-OT1	-	KBTBD11 overlapping transcript 1	ncRNA
63588	chr14	20475171	20475550	+	0	NA	intron (NM_000270, intron 5 of 5)	intron (NM_000270, intron 5 of 5)	5954	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
1110	chr1	2052621	2053280	+	0	NA	intron (NM_002744, intron 1 of 17)	intron (NM_002744, intron 1 of 17)	2539	NM_002744	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
43171	chr11	75369801	75370300	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-18389	NM_020251	408		NM_004041	ENSG00000137486	ARRB1	ARB1|ARR1	arrestin beta 1	protein-coding
151555	chr21	46553371	46553530	+	0	NA	intron (NM_001353942, intron 25 of 37)	intron (NM_001353942, intron 25 of 37)	51632	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
107453	chr18	46481101	46481380	+	0	NA	intron (NM_144612, intron 39 of 39)	intron (NM_144612, intron 39 of 39)	37846	NM_001145473	125336		NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology PLAT domains 1	protein-coding
64136	chr14	22870571	22872100	+	0	NA	promoter-TSS (NM_001329226)	promoter-TSS (NM_001329226)	-405	NM_014045	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
183183	chr5	75567771	75567930	+	0	NA	intron (NM_016218, intron 3 of 14)	intron (NM_016218, intron 3 of 14)	-43603	NM_001276713	728780		NM_001271529	ENSG00000189045	ANKDD1B	-	ankyrin repeat and death domain containing 1B	protein-coding
69827	chr14	99225851	99226650	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	45947	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
110147	chr19	1616851	1617480	+	0	NA	intron (NM_003200, intron 16 of 18)	intron (NM_003200, intron 16 of 18)	-11703	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
181755	chr5	50717571	50718030	+	0	NA	intron (NM_024615, intron 2 of 25)	L2a|LINE|L2	50386	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
200478	chr6	135197001	135197350	+	0	NA	exon (NM_001161658, exon 10 of 16)	exon (NM_001161658, exon 10 of 16)	15867	NM_001161657	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
70504	chr14	102200051	102200150	+	0	NA	intron (NM_001242415, intron 3 of 3)	intron (NM_001242415, intron 3 of 3)	35326	NM_001353832	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
11728	chr1	91887871	91888030	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	-1799	NM_003243	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
227299	chr9	89413701	89414300	+	0	NA	intron (NM_001371201, intron 2 of 18)	intron (NM_001371201, intron 2 of 18)	65890	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
58167	chr12	124961251	124961350	+	0	NA	intron (NM_032656, intron 15 of 26)	(ACAC)n|Simple_repeat|Simple_repeat	27831	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
205532	chr7	19664251	19664630	+	0	NA	Intergenic	L1MB5|LINE|L1	40996	NR_036101	100422967		NR_036101	ENSG00000265932	MIR3146	mir-3146	microRNA 3146	ncRNA
10026	chr1	56465151	56465250	+	0	NA	Intergenic	MIR3|SINE|MIR	50237	NR_147163	105378744		NR_147163	ENSG00000223956	LINC01767	CRLM1	long intergenic non-protein coding RNA 1767	ncRNA
175566	chr4	75640071	75640550	+	0	NA	Intergenic	AluSq2|SINE|Alu	-9782	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
120925	chr19	45656371	45656530	+	0	NA	Intergenic	AluSq|SINE|Alu	-10821	NM_001352052	24139		NM_012155	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	EMAP like 2	protein-coding
137546	chr2	197227471	197227630	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	29559	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
186174	chr5	134197101	134197500	+	0	NA	non-coding (NR_149151, exon 7 of 7)	non-coding (NR_149151, exon 7 of 7)	-20267	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
29715	chr10	72076251	72076350	+	0	NA	intron (NM_014767, intron 2 of 11)	intron (NM_014767, intron 2 of 11)	12251	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
199496	chr6	118664021	118664650	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	-12744	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
29674	chr10	72041971	72042130	+	0	NA	Intergenic	L1MC3|LINE|L1	46501	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
185823	chr5	132452521	132452780	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	38123	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
122194	chr19	48938001	48938200	+	0	NA	intron (NM_014475, intron 3 of 6)	AluSx|SINE|Alu	4401	NM_014475	27294		NM_014475	ENSG00000104808	DHDH	2DD|HUM2DD	dihydrodiol dehydrogenase	protein-coding
177722	chr4	122220921	122221980	+	0	NA	intron (NM_001384125, intron 22 of 87)	L1MD2|LINE|L1	50847	NM_015312	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
97194	chr17	42687271	42688080	+	0	NA	intron (NM_003632, intron 7 of 23)	CpG	5144	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
931	chr1	1720401	1720600	+	0	NA	intron (NR_132739, intron 3 of 19)	AluSg|SINE|Alu	3857	NR_132739	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
155121	chr22	37630001	37630600	+	0	NA	intron (NM_001172688, intron 14 of 17)	L2b|LINE|L2	-9369	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
222944	chr8	143038121	143038630	+	0	NA	promoter-TSS (NR_126398)	promoter-TSS (NR_126398)	-834	NR_149322	286122		NR_126398	ENSG00000177335	LY6S-AS1	C8orf31|LINC02904	LY6S antisense RNA 1	ncRNA
7985	chr1	37930171	37931000	+	0	NA	intron (NR_158630, intron 7 of 24)	intron (NR_158630, intron 7 of 24)	1154	NM_001297434	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
20750	chr1	200981601	200981800	+	0	NA	intron (NM_017596, intron 27 of 33)	intron (NM_017596, intron 27 of 33)	42014	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
130775	chr2	86840251	86840450	+	0	NA	3' UTR (NM_004931, exon 6 of 6)	3' UTR (NM_004931, exon 6 of 6)	-21475	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
143880	chr20	32567501	32567830	+	0	NA	intron (NM_001256798, intron 1 of 10)	MIR|SINE|MIR	17668	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
124388	chr19	58393201	58393880	+	0	NA	TTS (NR_162103)	TTS (NR_162103)	176	NR_162103	113218487		NR_162103		MIR10394	-	microRNA 10394	ncRNA
53065	chr12	57718421	57718680	+	0	NA	intron (NM_001261420, intron 11 of 13)	intron (NM_001261420, intron 11 of 13)	-7690	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
83425	chr16	27242721	27243480	+	0	NA	intron (NM_145080, intron 2 of 7)	intron (NM_145080, intron 2 of 7)	-25105	NR_037184	400512		NR_037184	ENSG00000245888	NSMCE1-DT	-	NSMCE1 divergent transcript	ncRNA
52758	chr12	56660151	56660830	+	0	NA	Intergenic	Intergenic	-14506	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
83373	chr16	25255771	25256130	+	0	NA	intron (NM_001012981, intron 1 of 6)	intron (NM_001012981, intron 1 of 6)	1895	NM_001012981	342357		NM_001012981	ENSG00000155592	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding
66575	chr14	63468301	63468830	+	0	NA	intron (NM_006246, intron 2 of 13)	intron (NM_006246, intron 2 of 13)	39673	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
91777	chr17	7001401	7001880	+	0	NA	exon (NM_000697, exon 8 of 14)	exon (NM_000697, exon 8 of 14)	5591	NM_000697	239		NM_000697	ENSG00000108839	ALOX12	12-LOX|12S-LOX|LOG12	arachidonate 12-lipoxygenase, 12S type	protein-coding
55696	chr12	107737001	107737200	+	0	NA	intron (NR_120474, intron 1 of 4)	L2a|LINE|L2	545	NR_120474	101929162		NR_120474	ENSG00000258136	PRDM4-AS1	-	PRDM4 antisense RNA 1	ncRNA
199837	chr6	127749201	127749500	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	105838	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
85944	chr16	57167821	57168380	+	0	NA	intron (NM_001354099, intron 5 of 7)	intron (NM_001354099, intron 5 of 7)	14450	NM_001354098	80011		NM_024946	ENSG00000172775	PSME3IP1	C16orf94|CDA018|CDA10|FAM192A|NIP30|PIP30	proteasome activator subunit 3 interacting protein 1	protein-coding
14926	chr1	147543721	147544080	+	0	NA	intron (NM_004326, intron 1 of 9)	intron (NM_004326, intron 1 of 9)	2399	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
166107	chr3	111065451	111065550	+	0	NA	intron (NR_045114, intron 2 of 3)	L2c|LINE|L2	4459	NR_045114	100506555		NR_045114		NECTIN3-AS1	PVRL3-AS1	NECTIN3 antisense RNA 1	ncRNA
212641	chr7	129493151	129493780	+	0	NA	Intergenic	Intergenic	-9066	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
71356	chr14	105473551	105476230	+	0	NA	promoter-TSS (NM_001270841)	promoter-TSS (NM_001270841)	69	NM_001270841	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
178433	chr4	147815551	147816250	+	0	NA	intron (NM_024605, intron 1 of 22)	MLT1D|LTR|ERVL-MaLR	33305	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
101876	chr17	74284551	74285650	+	0	NA	exon (NM_001172810, exon 3 of 14)	exon (NM_001172810, exon 3 of 14)	10866	NM_023036	64446		NM_023036	ENSG00000171595	DNAI2	CILD9|DIC2|oda6	dynein axonemal intermediate chain 2	protein-coding
53090	chr12	57743451	57743550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1339	NM_014770	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
204740	chr7	5567871	5568300	+	0	NA	Intergenic	MIRb|SINE|MIR	-24731	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
138241	chr2	203011151	203011480	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	-3560	NM_001114132	65065		NM_198945	ENSG00000144426	NBEAL1	A530083I02Rik|ALS2CR16|ALS2CR17	neurobeachin like 1	protein-coding
118377	chr19	35722271	35722630	+	0	NA	exon (NM_014727, exon 4 of 37)	exon (NM_014727, exon 4 of 37)	4447	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
35152	chr11	737371	738230	+	0	NA	Intergenic	MER21A|LTR|ERVL	-9664	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
11183	chr1	87336501	87337100	+	0	NA	intron (NM_001369491, intron 2 of 4)	intron (NM_001369491, intron 2 of 4)	5056	NM_001369491	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
1861	chr1	6395951	6396450	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-2433	NM_007274	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
50144	chr12	45732171	45732630	+	0	NA	intron (NM_152641, intron 3 of 20)	intron (NM_152641, intron 3 of 20)	2691	NM_001347839	196528		NM_152641	ENSG00000189079	ARID2	BAF200|CSS6|SMARCF3|ZIPZAP|p200	AT-rich interaction domain 2	protein-coding
111938	chr19	4784951	4785250	+	0	NA	Intergenic	Intergenic	-6634	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
153881	chr22	30278971	30279850	+	0	NA	Intergenic	Intergenic	10095	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
210997	chr7	102283371	102283730	+	0	NA	3' UTR (NM_181500, exon 23 of 23)	3' UTR (NM_181500, exon 23 of 23)	-1591	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
164599	chr3	66239651	66240150	+	0	NA	intron (NM_173471, intron 3 of 10)	Tigger2|DNA|TcMar-Tigger	18897	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
46885	chr11	134033801	134035300	+	0	NA	intron (NR_027276, intron 1 of 2)	intron (NR_027276, intron 1 of 2)	2278	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
145120	chr20	38804171	38806000	+	0	NA	promoter-TSS (NM_015568)	promoter-TSS (NM_015568)	-612	NM_001172735	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
21577	chr1	206474771	206475080	+	0	NA	TTS (NR_106919)	TTS (NR_106919)	122	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
12128	chr1	100063721	100063980	+	0	NA	intron (NM_033055, intron 5 of 11)	intron (NM_033055, intron 5 of 11)	25755	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
145218	chr20	38910951	38911650	+	0	NA	intron (NM_001172735, intron 9 of 9)	AluY|SINE|Alu	-15117	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
211299	chr7	103282621	103283030	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2359	NR_027768	349152		NM_182634	ENSG00000291139	DPY19L2P2	-	DPY19L2 pseudogene 2	pseudo
39310	chr11	58726721	58727430	+	0	NA	intron (NM_201648, intron 1 of 5)	MER50-int|LTR|ERV1	4868	NM_201648	10249		NM_005838	ENSG00000149124	GLYAT	ACGNAT|CAT|GAT	glycine-N-acyltransferase	protein-coding
148902	chr21	8471051	8471900	+	0	NA	Intergenic	Intergenic	30329	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
130466	chr2	85543871	85544480	+	0	NA	TTS (NM_001142269)	TTS (NM_001142269)	5007	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
90550	chr17	1499971	1500400	+	0	NA	intron (NM_016532, intron 7 of 11)	L2a|LINE|L2	-7499	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
229157	chr9	114496021	114496280	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	7065	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
238401	chrX	150544271	150544430	+	0	NA	Intergenic	Intergenic	-24271	NM_001376906	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
154704	chr22	36409101	36409300	+	0	NA	Intergenic	L2c|LINE|L2	-21233	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
205736	chr7	23496001	23496500	+	0	NA	Intergenic	AluSx|SINE|Alu	5862	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
93192	chr17	17809901	17810100	+	0	NA	3' UTR (NM_030665, exon 6 of 6)	3' UTR (NM_030665, exon 6 of 6)	3545	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
175762	chr4	77768101	77768300	+	0	NA	intron (NM_144571, intron 4 of 11)	AluSx|SINE|Alu	50864	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
137742	chr2	197842571	197842730	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	38057	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
4245	chr1	19594471	19594850	+	0	NA	intron (NR_135054, intron 1 of 1)	AluSx|SINE|Alu	2172	NR_135054	105378614		NR_135054	ENSG00000235185	MICOS10-DT	-	MICOS10 divergent transcript	ncRNA
119180	chr19	39421551	39421650	+	0	NA	intron (NM_022835, intron 16 of 18)	AluJb|SINE|Alu	7821	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
12821	chr1	109987251	109987630	+	0	NA	intron (NM_001242673, intron 1 of 16)	intron (NM_001242673, intron 1 of 16)	2675	NM_006621	10768		NM_006621	ENSG00000168710	AHCYL1	DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA	adenosylhomocysteinase like 1	protein-coding
233849	chrX	1512421	1513280	+	0	NA	intron (NM_178129, intron 1 of 1)	(ATT)n|Simple_repeat|Simple_repeat	24335	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
187863	chr5	147857501	147857730	+	0	NA	Intergenic	Intergenic	-18419	NM_001354966	6690		NM_003122	ENSG00000164266	SPINK1	PCTT|PSTI|Spink3|TATI|TCP	serine peptidase inhibitor Kazal type 1	protein-coding
103847	chr17	79706971	79707130	+	0	NA	promoter-TSS (NR_109783)	promoter-TSS (NR_109783)	199	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	mir-4739	microRNA 4739	ncRNA
219686	chr8	80579901	80580250	+	0	NA	Intergenic	Intergenic	93849	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
156406	chr22	41177151	41177700	+	0	NA	exon (NM_001429, exon 31 of 31)	exon (NM_001429, exon 31 of 31)	20076	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
141203	chr2	239339671	239340430	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	11754	NR_039948	100616360		NR_039948	ENSG00000264292	MIR2467	mir-2467	microRNA 2467	ncRNA
136152	chr2	174333551	174334080	+	0	NA	Intergenic	Intergenic	-1139	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
148652	chr21	6107971	6108330	+	0	NA	Intergenic	Intergenic	-2981	NM_001320643	102724428		NM_001320643	ENSG00000275993	LOC102724428	SIK|SIK-1|SIK1|SIK1B|SNF1LK	salt inducible kinase 1B (putative)	protein-coding
125802	chr2	24046021	24046300	+	0	NA	intron (NM_025203, intron 1 of 3)	intron (NM_025203, intron 1 of 3)	1231	NM_025203	80304		NM_025203	ENSG00000163026	WDCP	C2orf44|MMAP|PP384	WD repeat and coiled coil containing	protein-coding
177526	chr4	118631201	118631750	+	0	NA	non-coding (NR_109983, exon 10 of 10)	non-coding (NR_109983, exon 10 of 10)	1546	NR_103825	729218		NR_103825		LOC729218	-	uncharacterized LOC729218	pseudo
76564	chr15	75235051	75235150	+	0	NA	Intergenic	Intergenic	-5410	NM_001321990	105376731		NM_001321990	ENSG00000293502	LOC105376731	-	taste receptor cell protein 1-like	pseudo
194942	chr6	35257121	35257380	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2485	NM_003427	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
186927	chr5	139613151	139613450	+	0	NA	intron (NM_003339, intron 2 of 6)	intron (NM_003339, intron 2 of 6)	-33999	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
154603	chr22	36295051	36295150	+	0	NA	intron (NM_002473, intron 26 of 40)	intron (NM_002473, intron 26 of 40)	-8193	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
51158	chr12	50166251	50167790	+	0	NA	intron (NM_001281731, intron 1 of 10)	CpG	349	NM_001331070	91012		NM_147190	ENSG00000139624	CERS5	LASS5|Trh4	ceramide synthase 5	protein-coding
162540	chr3	48631621	48632180	+	0	NA	exon (NM_001040454, exon 5 of 20)	exon (NM_001040454, exon 5 of 20)	1798	NR_106882	102465495		NR_106882	ENSG00000284364	MIR6824	hsa-mir-6824	microRNA 6824	ncRNA
184165	chr5	95758551	95758850	+	0	NA	intron (NM_014899, intron 6 of 11)	intron (NM_014899, intron 6 of 11)	-26598	NM_001349303	83890		NM_031952	ENSG00000145757	SPATA9	NYD-SP16	spermatogenesis associated 9	protein-coding
92177	chr17	7715351	7715650	+	0	NA	Intergenic	Intergenic	-2244	NM_020877	146754		NM_020877	ENSG00000183914	DNAH2	DNAHC2|DNHD3|SPGF45	dynein axonemal heavy chain 2	protein-coding
132797	chr2	110251351	110251450	+	0	NA	intron (NR_037626, intron 1 of 3)	L1PA6|LINE|L1	5762	NR_037626	100507334		NR_037626	ENSG00000290732	LOC100507334	-	two pore channel 3 pseudogene	pseudo
151083	chr21	44822751	44823330	+	0	NA	Intergenic	L1MEg|LINE|L1	-4911	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
16111	chr1	153636821	153637800	+	0	NA	intron (NM_001244664, intron 2 of 3)	intron (NM_001244664, intron 2 of 3)	-2949	NM_001024210	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
78676	chr15	95621001	95621200	+	0	NA	Intergenic	Intergenic	188007	NR_027133	145820		NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
202799	chr6	159125001	159125230	+	0	NA	Intergenic	L1ME4a|LINE|L1	-44285	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
157161	chr22	42892221	42892880	+	0	NA	intron (NM_001349972, intron 3 of 10)	intron (NM_001349972, intron 3 of 10)	-35277	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
47420	chr12	3073101	3074330	+	0	NA	Intergenic	Intergenic	-3640	NM_001168320	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
62938	chr13	111223321	111223680	+	0	NA	intron (NM_001354053, intron 3 of 18)	intron (NM_001354053, intron 3 of 18)	-17674	NM_001354061	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
118093	chr19	34400151	34400450	+	0	NA	3' UTR (NM_001329911, exon 18 of 18)	3' UTR (NM_001329911, exon 18 of 18)	-4098	NM_001353433	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
158013	chr22	49901751	49902950	+	0	NA	3' UTR (NM_024105, exon 10 of 10)	3' UTR (NM_024105, exon 10 of 10)	16088	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
179931	chr5	761251	762250	+	0	NA	intron (NM_001351303, intron 4 of 13)	intron (NM_001351303, intron 4 of 13)	22979	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
16818	chr1	155607601	155608000	+	0	NA	Intergenic	AluJb|SINE|Alu	-2370	NM_001350782	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
12783	chr1	109735521	109735980	+	0	NA	non-coding (NR_024537, exon 8 of 8)	non-coding (NR_024537, exon 8 of 8)	5288	NR_024537	2947		NM_000849	ENSG00000134202	GSTM3	GST5|GSTB|GSTM3-3|GSTM3TV2|GTM3|hGSTM3-3	glutathione S-transferase mu 3	protein-coding
154953	chr22	37255071	37255230	+	0	NA	Intergenic	L1M5|LINE|L1	-10881	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
127938	chr2	46535001	46536250	+	0	NA	intron (NM_001371282, intron 3 of 4)	intron (NM_001371282, intron 3 of 4)	-6865	NM_012249	23433		NM_012249	ENSG00000119729	RHOQ	ARHQ|HEL-S-42|RASL7A|TC10|TC10A	ras homolog family member Q	protein-coding
147160	chr20	56427921	56428380	+	0	NA	intron (NM_001164114, intron 1 of 5)	intron (NM_001164114, intron 1 of 5)	15890	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
9440	chr1	49089051	49089150	+	0	NA	intron (NR_136623, intron 3 of 12)	L1PA15|LINE|L1	-168311	NR_125988	101929721		NR_125988	ENSG00000230114	AGBL4-AS1	-	AGBL4 antisense RNA 1	ncRNA
68687	chr14	90396251	90397300	+	0	NA	promoter-TSS (NM_006888)	promoter-TSS (NM_006888)	-254	NM_006888	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
2727	chr1	10660401	10660600	+	0	NA	exon (NM_001079843, exon 6 of 21)	exon (NM_001079843, exon 6 of 21)	136146	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
23196	chr1	226989951	226990450	+	0	NA	3' UTR (NM_001366010, exon 35 of 35)	3' UTR (NM_001366010, exon 35 of 35)	49906	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
30355	chr10	77842951	77843050	+	0	NA	intron (NM_004747, intron 6 of 31).2	intron (NM_004747, intron 6 of 31).2	83755	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
178221	chr4	142701901	142702180	+	0	NA	intron (NM_001385336, intron 2 of 26)	intron (NM_001385336, intron 2 of 26)	-141285	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
34681	chr10	133361721	133362480	+	0	NA	TTS (NM_004092)	TTS (NM_004092)	-4081	NM_001301828	282969		NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
55859	chr12	109309151	109309250	+	0	NA	promoter-TSS (NM_213596)	promoter-TSS (NM_213596)	84	NM_213596	121643		NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
89338	chr16	88752521	88753180	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	10083	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
51851	chr12	53470051	53470630	+	0	NA	intron (NM_031989, intron 13 of 14)	AluSg|SINE|Alu	5872	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
231868	chr9	132946621	132947080	+	0	NA	intron (NM_004188, intron 1 of 10)	intron (NM_004188, intron 1 of 10)	1143	NR_049862	100846992		NR_049862	ENSG00000263816	MIR548AW	-	microRNA 548aw	ncRNA
62289	chr13	98975851	98976550	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	1864	NM_001366683	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
212975	chr7	130973521	130974100	+	0	NA	intron (NR_109851, intron 4 of 5)	MSTA|LTR|ERVL-MaLR	60346	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
99515	chr17	50272921	50273700	+	0	NA	intron (NM_001168215, intron 1 of 5)	(CCGCGC)n|Simple_repeat|Simple_repeat	-1156	NM_153229	162461		NM_153229	ENSG00000167105	TMEM92	-	transmembrane protein 92	protein-coding
164320	chr3	57757971	57758130	+	0	NA	intron (NR_165328, intron 2 of 22)	intron (NR_165328, intron 2 of 22)	794	NM_001304421	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
213246	chr7	134141171	134141530	+	0	NA	intron (NM_001365700, intron 3 of 15)	MER5A|DNA|hAT-Charlie	14010	NM_144648	136332		NM_144648	ENSG00000155530	LRGUK	CFAP246	leucine rich repeats and guanylate kinase domain containing	protein-coding
58879	chr13	18281121	18281380	+	0	NA	Intergenic	Intergenic	85953	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
81280	chr16	4660201	4661080	+	0	NA	intron (NM_001142291, intron 5 of 15)	intron (NM_001142291, intron 5 of 15)	-10678	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
200795	chr6	137892371	137892680	+	0	NA	Intergenic	Intergenic	-24292	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
97002	chr17	42287171	42287700	+	0	NA	promoter-TSS (NM_001288720)	promoter-TSS (NM_001288720)	-112	NM_003152	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
133824	chr2	127860751	127861130	+	0	NA	TTS (NM_001199140)	TTS (NM_001199140)	-2785	NM_004805	5433		NM_004805	ENSG00000144231	POLR2D	HSRBP4|HSRPB4|RBP4|RPB16|RPB4	RNA polymerase II subunit D	protein-coding
96145	chr17	39673021	39673280	+	0	NA	exon (NM_001291728, exon 6 of 7)	exon (NM_001291728, exon 6 of 7)	4697	NM_002686	5409		NM_002686	ENSG00000141744	PNMT	PENT|PNMTase	phenylethanolamine N-methyltransferase	protein-coding
151389	chr21	45976601	45976800	+	0	NA	Intergenic	MER11C|LTR|ERVK	3730	NR_109931	101928796		NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
121045	chr19	45821571	45822100	+	0	NA	intron (NM_004819, intron 21 of 26)	intron (NM_004819, intron 21 of 26)	-6527	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
51396	chr12	51954671	51955230	+	0	NA	intron (NM_020327, intron 1 of 8)	intron (NM_020327, intron 1 of 8)	1570	NM_020327	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
22131	chr1	211862451	211862750	+	0	NA	Intergenic	L1MC1|LINE|L1	31639	NR_135820	102723727		NR_135818	ENSG00000229258	LPGAT1-AS1	-	LPGAT1 antisense RNA 1	ncRNA
30406	chr10	78852871	78853030	+	0	NA	Intergenic	Intergenic	214498	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
205113	chr7	6850121	6850380	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-23975	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
162273	chr3	47323421	47323700	+	0	NA	intron (NM_025010, intron 3 of 9)	intron (NM_025010, intron 3 of 9)	40616	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
73050	chr15	40891701	40892350	+	0	NA	Intergenic	Intergenic	-2425	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
75656	chr15	67544821	67545430	+	0	NA	intron (NM_145160, intron 1 of 21)	intron (NM_145160, intron 1 of 21)	2422	NM_145160	5607		NM_002757	ENSG00000137764	MAP2K5	HsT17454|MAPKK5|MEK5|PRKMK5	mitogen-activated protein kinase kinase 5	protein-coding
231896	chr9	133059801	133060300	+	0	NA	Intergenic	L1MC5a|LINE|L1	-1931	NM_001807	1056		NM_001807	ENSG00000170835	CEL	BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8	carboxyl ester lipase	protein-coding
72798	chr15	40050071	40051400	+	0	NA	intron (NR_040060, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	11424	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
124626	chr2	1518021	1518880	+	0	NA	intron (NM_175722, intron 13 of 14)	intron (NM_175722, intron 13 of 14)	-33480	NR_168373	102723730		NR_168373		LOC102723730	-	uncharacterized LOC102723730	ncRNA
54511	chr12	92105751	92106250	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	35713	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
50830	chr12	49105371	49105530	+	0	NA	intron (NM_001352163, intron 2 of 15)	intron (NM_001352163, intron 2 of 15)	5450	NM_001352166	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
224120	chr9	4664471	4665430	+	0	NA	3' UTR (NM_203453, exon 1 of 1)	3' UTR (NM_203453, exon 1 of 1)	1530	NM_001039395	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
201108	chr6	142855601	142856180	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	89286	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
164577	chr3	64029121	64029380	+	0	NA	Intergenic	Intergenic	-5240	NM_001271780	9861		NM_014814	ENSG00000163636	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	proteasome 26S subunit, non-ATPase 6	protein-coding
88563	chr16	85550201	85550530	+	0	NA	Intergenic	MIR|SINE|MIR	-61044	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
5989	chr1	26973351	26973850	+	0	NA	Intergenic	AluSc8|SINE|Alu	-13132	NM_152365	126695		NM_152365	ENSG00000175707	KDF1	C1orf172|ECTD12	keratinocyte differentiation factor 1	protein-coding
19541	chr1	178734151	178734250	+	0	NA	intron (NM_001286247, intron 1 of 18)	L1MB8|LINE|L1	8956	NM_152663	55103		NM_018037	ENSG00000116191	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
127074	chr2	37535821	37536510	+	0	NA	Intergenic	AluYk2|SINE|Alu	135477	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
135184	chr2	158024321	158024600	+	0	NA	intron (NM_001135098, intron 2 of 8)	intron (NM_001135098, intron 2 of 8)	29281	NM_001135098	151531		NM_173355	ENSG00000007001	UPP2	UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
210979	chr7	101821401	101821800	+	0	NA	intron (NM_181552, intron 1 of 23)	AluYk3|SINE|Alu	3974	NM_181552	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
4776	chr1	23544321	23545200	+	0	NA	Intergenic	Intergenic	-13527	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
23358	chr1	228150971	228151130	+	0	NA	intron (NM_020435, intron 1 of 1)	intron (NM_020435, intron 1 of 1)	1120	NM_020435	57165		NM_020435	ENSG00000198835	GJC2	CX46.6|Cx47|GJA12|HLD2|LMPH1C|LMPHM3|PMLDAR|SPG44	gap junction protein gamma 2	protein-coding
22838	chr1	225442651	225443380	+	0	NA	Intergenic	Intergenic	-14160	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
116881	chr19	18668071	18668230	+	0	NA	TTS (NM_001345985)	TTS (NM_001345985)	-15530	NM_015321	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
118399	chr19	35740201	35741670	+	0	NA	intron (NM_024660, intron 2 of 4)	CpG-14298	1517	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
158319	chr22	50433451	50434100	+	0	NA	intron (NM_001351641, intron 12 of 23)	intron (NM_001351641, intron 12 of 23)	26333	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
169357	chr3	160404821	160405280	+	0	NA	TTS (NR_029525)	TTS (NR_029525)	305	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
27006	chr10	26823451	26823750	+	0	NA	intron (NR_145410, intron 1 of 11)	intron (NR_145410, intron 1 of 11)	37358	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
194024	chr6	31825251	31825750	+	0	NA	Intergenic	Intergenic	-2238	NM_005346	3304		NM_005346	ENSG00000204388	HSPA1B	HSP70-1|HSP70-1B|HSP70-2|HSP70.1|HSP70.2|HSP72|HSPA1|HSX70	heat shock protein family A (Hsp70) member 1B	protein-coding
126423	chr2	27754051	27754480	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-17452	NM_145330	9553		NM_004891	ENSG00000243147	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L|bL33m	mitochondrial ribosomal protein L33	protein-coding
35911	chr11	2421671	2421830	+	0	NA	intron (NM_014555, intron 2 of 23)	intron (NM_014555, intron 2 of 23)	1295	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
41987	chr11	67381751	67381850	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-7623	NM_001166212	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
31919	chr10	100512071	100512480	+	0	NA	intron (NM_015490, intron 3 of 25)	intron (NM_015490, intron 3 of 25)	7586	NM_015490	25956		NM_015490	ENSG00000075826	SEC31B	SEC31B-1|SEC31L2	SEC31 homolog B, COPII coat complex component	protein-coding
227277	chr9	89381001	89381430	+	0	NA	exon (NM_001142287, exon 16 of 21)	exon (NM_001142287, exon 16 of 21)	62364	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
67314	chr14	69617471	69618280	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	6279	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
95539	chr17	36608701	36608900	+	0	NA	3' UTR (NM_024864, exon 5 of 5)	3' UTR (NM_024864, exon 5 of 5)	7217	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
101439	chr17	67431301	67432150	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-39764	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
91531	chr17	4986851	4988730	+	0	NA	promoter-TSS (NM_001171167)	promoter-TSS (NM_001171167)	-115	NM_001171166	23125		NM_015099	ENSG00000108509	CAMTA2	-	calmodulin binding transcription activator 2	protein-coding
231437	chr9	131254051	131254550	+	0	NA	Intergenic	Intergenic	22210	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
130498	chr2	85588371	85588680	+	0	NA	intron (NM_006634, intron 1 of 2)	intron (NM_006634, intron 1 of 2)	4094	NM_006634	10791		NM_006634	ENSG00000168899	VAMP5	-	vesicle associated membrane protein 5	protein-coding
179759	chr5	260471	260650	+	0	NA	Intergenic	CpG	10964	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
197676	chr6	85579871	85580230	+	0	NA	intron (NR_146775, intron 1 of 28)	L1M1|LINE|L1	13808	NM_153816	57231		NM_020468	ENSG00000135317	SNX14	RGS-PX2|SCAR20	sorting nexin 14	protein-coding
94483	chr17	29277971	29279030	+	0	NA	intron (NM_020772, intron 2 of 3)	AluYm1|SINE|Alu	15648	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
146708	chr20	50575621	50576200	+	0	NA	intron (NM_002827, intron 5 of 9)	AluJo|SINE|Alu	-9876	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
95768	chr17	38670501	38670830	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	4292	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
1270	chr1	2311021	2312350	+	0	NA	Intergenic	Intergenic	40976	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
103525	chr17	78486871	78487030	+	0	NA	intron (NM_173628, intron 44 of 80)	MLT1K|LTR|ERVL-MaLR	2040	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
110072	chr19	1500701	1501830	+	0	NA	Intergenic	Intergenic	10084	NM_138393	92840		NM_138393	ENSG00000115255	REEP6	C19orf32|DP1L1|REEP6.1|REEP6.2|RP77|TB1|TB2L1|Yip2f	receptor accessory protein 6	protein-coding
49833	chr12	32302271	32302430	+	0	NA	intron (NR_148725, intron 3 of 9)	MER102a|DNA|hAT-Charlie	-97208	NM_001384126	121512		NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
184504	chr5	100890721	100891400	+	0	NA	intron (NM_175052, intron 2 of 2)	intron (NM_175052, intron 2 of 2)	12222	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
69446	chr14	94180571	94181280	+	0	NA	intron (NM_020958, intron 2 of 4).2	intron (NM_020958, intron 2 of 4).2	5464	NM_001348142	57718		NM_020958	ENSG00000119698	PPP4R4	CFAP14|KIAA1622|PP4R4	protein phosphatase 4 regulatory subunit 4	protein-coding
45445	chr11	118441721	118442480	+	0	NA	intron (NM_001197104, intron 1 of 35)	intron (NM_001197104, intron 1 of 35)	5608	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
53579	chr12	67669321	67670230	+	0	NA	Intergenic	Intergenic	21030	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
169851	chr3	177190671	177190830	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	5728	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
181114	chr5	37214451	37215200	+	0	NA	intron (NM_001384732, intron 15 of 52)	Tigger2b_Pri|DNA|TcMar-Tigger	-34221	NR_134263	105374727		NR_134263	ENSG00000286193	CPLANE1-AS1	-	CPLANE1 antisense RNA 1	ncRNA
69628	chr14	97705201	97705430	+	0	NA	Intergenic	Intergenic	-18657	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
66069	chr14	58501221	58501530	+	0	NA	intron (NM_001329946, intron 27 of 29)	intron (NM_001329946, intron 27 of 29)	61694	NM_001244193	9786		NM_014749	ENSG00000100578	KIAA0586	JBTS23|SRTD14|Talpid3	KIAA0586	protein-coding
8590	chr1	41395421	41396600	+	0	NA	Intergenic	Intergenic	-20341	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
215707	chr8	1474571	1474730	+	0	NA	intron (NM_001346810, intron 3 of 14)	L1PA16|LINE|L1	147014	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
43924	chr11	90250951	90251280	+	0	NA	promoter-TSS (NR_104190)	promoter-TSS (NR_104190)	-117	NR_104190	101929222		NR_104190	ENSG00000261645	DISC1FP1	Boymaw	DISC1 fusion partner 1	ncRNA
152863	chr22	22342821	22343480	+	0	NA	Intergenic	Intergenic	45052	NR_027293	96610		NM_080926		BMS1P20	IGL|IGLV|IGLV1	BMS1 pseudogene 20	pseudo
224773	chr9	22006071	22006330	+	0	NA	exon (NM_004936, exon 2 of 2)	exon (NM_004936, exon 2 of 2)	3105	NM_004936	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
2246	chr1	8881071	8881230	+	0	NA	Intergenic	AluSg|SINE|Alu	2315	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
58661	chr12	132528371	132528880	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	23219	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
115135	chr19	14383431	14385200	+	0	NA	intron (NM_001025160, intron 1 of 18)	intron (NM_001025160, intron 1 of 18)	2871	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
150733	chr21	43752101	43752500	+	0	NA	intron (NM_001331030, intron 6 of 9)	intron (NM_001331030, intron 6 of 9)	10814	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
38636	chr11	46359121	46359900	+	0	NA	intron (NM_001199266, intron 1 of 30)	Charlie1a|DNA|hAT-Charlie	-2096	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
5010	chr1	24463871	24464230	+	0	NA	exon (NM_020448, exon 11 of 12)	exon (NM_020448, exon 11 of 12)	-38294	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
83863	chr16	28904801	28905000	+	0	NA	TTS (NM_004320)	TTS (NM_004320)	20338	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
84613	chr16	30693521	30694500	+	0	NA	Intergenic	Intergenic	4461	NM_001256932	730183		NM_001256932	ENSG00000261840	LOC730183	-	uncharacterized LOC730183	ncRNA
232088	chr9	133605051	133605230	+	0	NA	intron (NM_001080515, intron 1 of 2)	intron (NM_001080515, intron 1 of 2)	4249	NM_001080515	642968		NM_001080515	ENSG00000196990	FAM163B	C9orf166	family with sequence similarity 163 member B	protein-coding
223486	chr8	144058751	144059400	+	0	NA	exon (NM_017570, exon 4 of 27)	exon (NM_017570, exon 4 of 27)	1617	NM_017570	26873		NM_017570	ENSG00000178814	OPLAH	5-Opase|OPLA|OPLAHD	5-oxoprolinase, ATP-hydrolysing	protein-coding
64225	chr14	23072751	23073450	+	0	NA	intron (NM_014977, intron 8 of 18)	intron (NM_014977, intron 8 of 18)	-1531	NM_001164816	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
188184	chr5	150544651	150545050	+	0	NA	intron (NM_001543, intron 10 of 14)	intron (NM_001543, intron 10 of 14)	36719	NM_001543	3340		NM_001543	ENSG00000070614	NDST1	HSST|MRT46|NST1	N-deacetylase and N-sulfotransferase 1	protein-coding
234923	chrX	37753201	37753400	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-26759	NM_000397	1536		NM_000397	ENSG00000165168	CYBB	AMCBX2|CGD|CGDX|GP91-1|GP91-PHOX|GP91PHOX|IMD34|NOX2|p91-PHOX	cytochrome b-245 beta chain	protein-coding
169965	chr3	179215051	179215150	+	0	NA	intron (NM_006218, intron 9 of 20)	intron (NM_006218, intron 9 of 20)	36515	NM_014407	27094		NM_014407	ENSG00000171121	KCNMB3	BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3	potassium calcium-activated channel subfamily M regulatory beta subunit 3	protein-coding
106531	chr18	21181871	21182030	+	0	NA	Intergenic	AluJr|SINE|Alu	-60292	NM_001142966	80000		NM_024935	ENSG00000141449	GREB1L	C18orf6|DFNA80|KIAA1772|RHDA3	GREB1 like retinoic acid receptor coactivator	protein-coding
216030	chr8	9152601	9153330	+	0	NA	Intergenic	Intergenic	-1426	NM_001201329	79660		NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
226350	chr9	69809301	69809580	+	0	NA	Intergenic	MER66-int|LTR|ERV1	11299	NR_038833	494558		NR_038833	ENSG00000225626	CFAP95-DT	C9orf135-AS1|C9orf135-DT	CFAP95 divergent transcript	ncRNA
173434	chr4	8221101	8222450	+	0	NA	intron (NM_001318480, intron 9 of 17)	L1MC4|LINE|L1	22485	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
204518	chr7	4795501	4795700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6961	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
233876	chrX	1563271	1563430	+	0	NA	Intergenic	AluSq2|SINE|Alu	-26165	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
7054	chr1	31959121	31959380	+	0	NA	Intergenic	AluJb|SINE|Alu	-20882	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
214971	chr7	152024851	152026430	+	0	NA	promoter-TSS (NM_001371462)	promoter-TSS (NM_001371462)	-34	NM_001371458	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
106816	chr18	23992151	23993150	+	0	NA	promoter-TSS (NM_153211)	promoter-TSS (NM_153211)	-237	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
143556	chr20	31607121	31607780	+	0	NA	TTS (NM_002165)	TTS (NM_002165)	264	NR_036161	100422904		NR_036161	ENSG00000264395	MIR3193	-	microRNA 3193	ncRNA
239115	chrY	11295521	11296050	+	0	NA	Intergenic	Intergenic	1125805	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
33946	chr10	124624221	124624680	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-79578	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
116387	chr19	17947101	17949550	+	0	NA	Intergenic	CpG	-2977	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
150634	chr21	43395271	43395830	+	0	NA	Intergenic	Intergenic	31581	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
144098	chr20	33808921	33809650	+	0	NA	intron (NR_110623, intron 1 of 3)	AluY|SINE|Alu	1814	NR_110623	101929746		NR_110623	ENSG00000230753	ZNF341-AS1	-	ZNF341 antisense RNA 1	ncRNA
46700	chr11	128784601	128784830	+	0	NA	intron (NM_001167681, intron 6 of 9)	(CCCT)n|Simple_repeat|Simple_repeat	57754	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
227026	chr9	83954801	83955000	+	0	NA	intron (NM_032307, intron 2 of 3)	AluSg4|SINE|Alu	1842	NM_032307	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
6668	chr1	29129871	29130230	+	0	NA	Intergenic	Intergenic	-6147	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
182161	chr5	56603121	56603580	+	0	NA	intron (NR_161255, intron 1 of 5)	intron (NR_161255, intron 1 of 5)	2906	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
110168	chr19	1654051	1654230	+	0	NA	Intergenic	Intergenic	-1525	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
107188	chr18	35616451	35617530	+	0	NA	intron (NM_001384444, intron 1 of 11)	intron (NM_001384444, intron 1 of 11)	25253	NR_039771	100616257		NR_039771	ENSG00000283514	MIR3975	-	microRNA 3975	ncRNA
147313	chr20	57707801	57708300	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	1965	NM_020182	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
183458	chr5	79238651	79239400	+	0	NA	intron (NM_152405, intron 1 of 10)	intron (NM_152405, intron 1 of 10)	2894	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
224674	chr9	21119271	21119430	+	0	NA	Intergenic	Intergenic	22551	NM_002177	3467		NM_002177	ENSG00000177047	IFNW1	-	interferon omega 1	protein-coding
176256	chr4	86977571	86978080	+	0	NA	intron (NM_001166693, intron 2 of 20)	intron (NM_001166693, intron 2 of 20)	-29163	NM_001313959	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
205360	chr7	13806521	13806830	+	0	NA	Intergenic	L1PA2|LINE|L1	179839	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
166150	chr3	111571121	111571530	+	0	NA	intron (NR_134917, intron 3 of 14)	intron (NR_134917, intron 3 of 14)	24021	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
82664	chr16	19555071	19556630	+	0	NA	intron (NR_158160, intron 1 of 28)	CpG	147	NM_001300743	57020		NM_020314	ENSG00000103544	VPS35L	C16orf62|EC97|RTSC3	VPS35 endosomal protein sorting factor like	protein-coding
116014	chr19	17127301	17127500	+	0	NA	intron (NM_004145, intron 2 of 39)	AluSx1|SINE|Alu	35165	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
214308	chr7	149209351	149210050	+	0	NA	intron (NM_001303481, intron 4 of 8)	MIRc|SINE|MIR	14154	NM_001303481	8427		NM_003575	ENSG00000170265	ZNF282	HUB1	zinc finger protein 282	protein-coding
156094	chr22	40065871	40066230	+	0	NA	intron (NM_001024843, intron 1 of 23)	L1MEc|LINE|L1	21233	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
12056	chr1	98398701	98398900	+	0	NA	Intergenic	Intergenic	188089	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
137597	chr2	197286001	197286500	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	16269	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
207599	chr7	44970321	44970580	+	0	NA	intron (NM_033054, intron 9 of 21)	intron (NM_033054, intron 9 of 21)	8565	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
225232	chr9	34198301	34198580	+	0	NA	intron (NM_001171204, intron 2 of 7)	L1M3b|LINE|L1	19397	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
167740	chr3	131490351	131490850	+	0	NA	intron (NM_007208, intron 4 of 9)	L2a|LINE|L2	-11367	NR_002985	677836		NR_002985		SNORA58	ACA58|SNORA58B	small nucleolar RNA, H/ACA box 58	snoRNA
85983	chr16	57418071	57418230	+	0	NA	Intergenic	Intergenic	13383	NM_002987	6361		NM_002987	ENSG00000102970	CCL17	A-152E5.3|ABCD-2|SCYA17|TARC	C-C motif chemokine ligand 17	protein-coding
199447	chr6	117549601	117550280	+	0	NA	TTS (NM_001366459)	TTS (NM_001366459)	52571	NM_001017408	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
64672	chr14	32073601	32074080	+	0	NA	Intergenic	Intergenic	2859	NR_027263	84837		NM_032751		ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	ncRNA
178843	chr4	153750201	153750500	+	0	NA	intron (NM_173662, intron 2 of 8)	intron (NM_173662, intron 2 of 8)	9674	NM_173662	285533		NM_173662	ENSG00000145428	RNF175	-	ring finger protein 175	protein-coding
42692	chr11	72642501	72643850	+	0	NA	promoter-TSS (NM_001143839)	promoter-TSS (NM_001143839)	-715	NM_001243784	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
197649	chr6	84588401	84588600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-100958	NR_125877	102724201		NR_125875	ENSG00000228290	TBX18-AS1	-	TBX18 antisense RNA 1	ncRNA
144066	chr20	33677021	33677430	+	0	NA	exon (NM_005225, exon 6 of 7)	exon (NM_005225, exon 6 of 7)	-2797	NM_031232	63941		NM_031231	ENSG00000125967	NECAB3	APBA2BP|EFCBP3|NIP1|STIP3|SYTIP2|XB51|dJ63M2.4|dJ63M2.5	N-terminal EF-hand calcium binding protein 3	protein-coding
219263	chr8	67336901	67337100	+	0	NA	intron (NM_006421, intron 1 of 38)	AluY|SINE|Alu	6781	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
147019	chr20	53589421	53590000	+	0	NA	intron (NM_006526, intron 1 of 5)	intron (NM_006526, intron 1 of 5)	4129	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
16450	chr1	154580551	154581030	+	0	NA	TTS (NM_000748)	TTS (NM_000748)	13012	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
210690	chr7	100569901	100571630	+	0	NA	Intergenic	AluSx|SINE|Alu	3135	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
50183	chr12	46005151	46005500	+	0	NA	Intergenic	Intergenic	-14751	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
2775	chr1	10794871	10795100	+	0	NA	intron (NM_017766, intron 1 of 15)	CpG	1661	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
43368	chr11	76919101	76919400	+	0	NA	intron (NM_001300953, intron 1 of 9)	intron (NM_001300953, intron 1 of 9)	58332	NM_001300955	55331		NM_018367	ENSG00000078124	ACER3	APHC|PHCA|PLDECO	alkaline ceramidase 3	protein-coding
92379	chr17	8229651	8229950	+	0	NA	intron (NM_025099, intron 18 of 22)	intron (NM_025099, intron 18 of 22)	-5757	NR_026951	284029		NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324|RNA00324|TP53LC03	long intergenic non-protein coding RNA 324	ncRNA
11144	chr1	86749001	86749200	+	0	NA	TTS (NM_016009)	TTS (NM_016009)	44524	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
139781	chr2	230225201	230226690	+	0	NA	promoter-TSS (NM_001185015)	promoter-TSS (NM_001185015)	209	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
70713	chr14	103336271	103336880	+	0	NA	intron (NM_001969, intron 4 of 11)	AluSg|SINE|Alu	-1274	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
110196	chr19	1689821	1690080	+	0	NA	Intergenic	AluY|SINE|Alu	-37335	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
150116	chr21	37461301	37462130	+	0	NA	intron (NM_101395, intron 3 of 12)	L1MEc|LINE|L1	41416	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
43677	chr11	85788071	85788630	+	0	NA	intron (NM_032943, intron 1 of 18)	MIR|SINE|MIR	22791	NM_001365827	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
181636	chr5	49602401	49602880	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	838648	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
209611	chr7	77691501	77691700	+	0	NA	intron (NR_134251, intron 1 of 3)	AluY|SINE|Alu	4665	NR_134254	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
22720	chr1	224186051	224186150	+	0	NA	intron (NM_001321542, intron 1 of 2)	AluJb|SINE|Alu	2420	NM_001321542	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
134322	chr2	136057051	136057880	+	0	NA	Intergenic	Intergenic	58770	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
210946	chr7	101302801	101303780	+	0	NA	Intergenic	Intergenic	3677	NR_146480	101927721		NR_146480	ENSG00000232301	LNCPRESS1	-	lncRNA p53 regulated and ESC associated 1	ncRNA
9304	chr1	46490601	46491430	+	0	NA	intron (NM_172225, intron 2 of 5)	CpG-1072	1179	NM_172225	127343		NM_147192	ENSG00000197587	DMBX1	Atx|MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
99134	chr17	49259001	49259200	+	0	NA	TTS (NR_034161)	TTS (NR_034161)	10857	NR_034161	124871		NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	ncRNA
98268	chr17	46191471	46192030	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	1032	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
77815	chr15	88622111	88623300	+	0	NA	intron (NM_022767, intron 1 of 3)	LTR2B|LTR|ERV1	1365	NM_022767	64782		NM_022767	ENSG00000181026	AEN	ISG20L1|pp12744	apoptosis enhancing nuclease	protein-coding
50728	chr12	48975471	48975980	+	0	NA	Intergenic	Intergenic	-2597	NM_005430	7471		NM_005430	ENSG00000125084	WNT1	BMND16|INT1|OI15	Wnt family member 1	protein-coding
81466	chr16	8895651	8896150	+	0	NA	intron (NR_135826, intron 26 of 30)	AluSg|SINE|Alu	-26888	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
51026	chr12	49747871	49748030	+	0	NA	intron (NM_001098576, intron 1 of 9)	AluSx1|SINE|Alu	6141	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
180533	chr5	14591571	14592000	+	0	NA	intron (NM_019018, intron 1 of 7)	L3|LINE|CR1	9993	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
142117	chr20	2671921	2672500	+	0	NA	Intergenic	LTR40c|LTR|ERVL	-7987	NM_001258384	3420		NM_006899	ENSG00000101365	IDH3B	RP46	isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta	protein-coding
172726	chr4	2814501	2815800	+	0	NA	intron (NM_001145855, intron 1 of 12)	intron (NM_001145855, intron 1 of 12)	2859	NM_001145855	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
148535	chr20	64119351	64119450	+	0	NA	Intergenic	MIRb|SINE|MIR	-11835	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
66603	chr14	63639921	63640250	+	0	NA	intron (NM_001382425, intron 1 of 3)	intron (NM_001382425, intron 1 of 3)	1786	NM_001382427	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
137411	chr2	196267921	196269630	+	0	NA	intron (NM_001348768, intron 17 of 28)	intron (NM_001348768, intron 17 of 28)	8751	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
200822	chr6	137967921	137968450	+	0	NA	Intergenic	Intergenic	-22385	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
216217	chr8	11958851	11959150	+	0	NA	Intergenic	Intergenic	15599	NM_001033018	613210		NM_001033018	ENSG00000205884	DEFB136	DEFB137	defensin beta 136	protein-coding
80249	chr16	2209751	2210500	+	0	NA	TTS (NM_001199175)	TTS (NM_001199175)	943	NM_182563	283870		NM_182563	ENSG00000182685	BRICD5	C16orf79	BRICHOS domain containing 5	protein-coding
213279	chr7	134693301	134693700	+	0	NA	Intergenic	Intergenic	46647	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
132542	chr2	106184351	106184850	+	0	NA	intron (NR_165308, intron 1 of 14)	MLT1A0|LTR|ERVL-MaLR	9701	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
103341	chr17	78020321	78021150	+	0	NA	intron (NM_001142640, intron 2 of 21)	MER33|DNA|hAT-Charlie	16498	NM_018996	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
49180	chr12	15276101	15276350	+	0	NA	Intergenic	Intergenic	-46283	NM_030667	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
23811	chr1	234398821	234399530	+	0	NA	intron (NM_005646, intron 25 of 29)	intron (NM_005646, intron 25 of 29)	25474	NM_001301733	388753		NM_001012985	ENSG00000168275	COA6	C1orf31|CEMCOX4|MC4DN13	cytochrome c oxidase assembly factor 6	protein-coding
184985	chr5	113524121	113524480	+	0	NA	intron (NM_001345976, intron 2 of 27)	intron (NM_001345976, intron 2 of 27)	10606	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
24661	chr1	247077121	247077380	+	0	NA	intron (NM_001204220, intron 1 of 3)	intron (NM_001204220, intron 1 of 3)	1561	NM_033213	93474		NM_033213	ENSG00000277462	ZNF670	-	zinc finger protein 670	protein-coding
177022	chr4	106576471	106576630	+	0	NA	Intergenic	L1HS|LINE|L1	142926	NR_147150	105377355		NR_147150	ENSG00000249613	LINC02173	-	long intergenic non-protein coding RNA 2173	ncRNA
165130	chr3	71723621	71724200	+	0	NA	intron (NM_173359, intron 2 of 7)	intron (NM_173359, intron 2 of 7)	1492	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
196315	chr6	43074671	43074900	+	0	NA	3' UTR (NM_201521, exon 16 of 16)	3' UTR (NM_201521, exon 16 of 16)	-1529	NM_152881	5754		NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
29604	chr10	71748531	71750750	+	0	NA	3' UTR (NM_022153, exon 7 of 7)	3' UTR (NM_022153, exon 7 of 7)	-11790	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
125314	chr2	10687501	10687900	+	0	NA	intron (NM_024894, intron 1 of 20)	AluSc|SINE|Alu	2275	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
226252	chr9	67717821	67718750	+	0	NA	promoter-TSS (NR_144466).2	promoter-TSS (NR_144466).2	97	NR_144466	105379807		NR_144466		LOC105379807	-	uncharacterized LOC105379807	ncRNA
126561	chr2	28624871	28625830	+	0	NA	intron (NM_153021, intron 50 of 57)	intron (NM_153021, intron 50 of 57)	58993	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
157981	chr22	49832521	49832850	+	0	NA	Intergenic	Intergenic	-4812	NM_001304808	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
147980	chr20	62990371	62990980	+	0	NA	Intergenic	Intergenic	16289	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
31612	chr10	97370871	97371450	+	0	NA	intron (NM_015179, intron 20 of 33)	intron (NM_015179, intron 20 of 33)	30180	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
168868	chr3	152292471	152292650	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-6454	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
129493	chr2	69619571	69620230	+	0	NA	intron (NM_001371577, intron 2 of 14)	L2a|LINE|L2	23838	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
203508	chr7	636051	637150	+	0	NA	intron (NM_001164759, intron 4 of 10)	intron (NM_001164759, intron 4 of 10)	33202	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
16896	chr1	155865021	155865680	+	0	NA	intron (NM_152280, intron 1 of 3)	AluSp|SINE|Alu	5783	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
70574	chr14	102601521	102602250	+	0	NA	intron (NM_015156, intron 2 of 11)	intron (NM_015156, intron 2 of 11)	9236	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
154447	chr22	35391521	35391780	+	0	NA	intron (NM_002133, intron 4 of 4)	AluJb|SINE|Alu	-8490	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
89483	chr16	89117321	89118150	+	0	NA	intron (NR_147928, intron 7 of 11)	intron (NR_147928, intron 7 of 11)	-18813	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
181055	chr5	36236821	36237300	+	0	NA	intron (NM_001287341, intron 1 of 12)	L1ME4b|LINE|L1	4331	NM_001287340	133686		NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
23118	chr1	226688421	226688850	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-13567	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
188132	chr5	150396301	150396700	+	0	NA	exon (NM_001135245, exon 23 of 26)	exon (NM_001135245, exon 23 of 26)	16256	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
139257	chr2	219434901	219435630	+	0	NA	exon (NM_005876, exon 1 of 41)	exon (NM_005876, exon 1 of 41)	422	NM_005876	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
209259	chr7	75892201	75892400	+	0	NA	Intergenic	L2b|LINE|L2	13266	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
67154	chr14	68764951	68765250	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	27967	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
114541	chr19	12867271	12868050	+	0	NA	intron (NM_014975, intron 19 of 25)	CpG	13789	NM_001375	1777		NM_001375	ENSG00000105612	DNASE2	AIPCS|DNASE2A|DNL|DNL2	deoxyribonuclease 2, lysosomal	protein-coding
204040	chr7	1936401	1936880	+	0	NA	intron (NM_001304524, intron 15 of 16)	CpG	3931	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
173482	chr4	9154901	9155100	+	0	NA	Intergenic	L2a|LINE|L2	-18173	NM_001358418	100287045		NM_001358418	ENSG00000229924	FAM90A26	FAM90A26P	family with sequence similarity 90 member A26	protein-coding
161401	chr3	41218701	41218900	+	0	NA	intron (NM_001098210, intron 1 of 15)	AluJb|SINE|Alu	19295	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
239054	chrY	7281301	7281680	+	0	NA	intron (NR_028062, intron 1 of 7)	AluY|SINE|Alu	7518	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
47091	chr12	633951	634400	+	0	NA	intron (NR_122124, intron 3 of 4)	intron (NR_122124, intron 3 of 4)	3284	NR_122124	100049716		NR_122124	ENSG00000177406	NINJ2-AS1	-	NINJ2 antisense RNA 1	ncRNA
132373	chr2	105765471	105766350	+	0	NA	intron (NM_001004722, intron 1 of 3)	MLT1E1A|LTR|ERVL-MaLR	20847	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
119960	chr19	41885221	41885880	+	0	NA	intron (NM_199002, intron 1 of 28)	AluSc|SINE|Alu	1107	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
180328	chr5	6485401	6485800	+	0	NA	intron (NM_001145161, intron 1 of 1)	intron (NM_001145161, intron 1 of 1)	36741	NM_001145161	134111		NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 QL1	protein-coding
150682	chr21	43657371	43657950	+	0	NA	intron (NM_007031, intron 2 of 8)	intron (NM_007031, intron 2 of 8)	1828	NM_007031	11077		NM_007031	ENSG00000160207	HSF2BP	MEILB2|POF19	heat shock transcription factor 2 binding protein	protein-coding
91707	chr17	6456421	6456680	+	0	NA	intron (NM_001165966, intron 18 of 18)	MER5A1|DNA|hAT-Charlie	12095	NM_001195228	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
170295	chr3	184327501	184329130	+	0	NA	intron (NM_198244, intron 23 of 29)	AluSq2|SINE|Alu	2619	NR_003055	692107		NR_003055	ENSG00000212158	SNORD66	HBII-142	small nucleolar RNA, C/D box 66	snoRNA
66505	chr14	61708151	61708450	+	0	NA	intron (NM_001243084, intron 1 of 14)	L1PA4|LINE|L1	10678	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
83303	chr16	24516951	24517480	+	0	NA	Intergenic	Intergenic	-22351	NM_006910	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
145346	chr20	41141221	41141830	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-3525	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
101125	chr17	65029501	65030300	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	25874	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
81855	chr16	11621651	11623280	+	0	NA	Intergenic	Intergenic	-34999	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
130075	chr2	74492071	74492230	+	0	NA	exon (NM_001376141, exon 9 of 12)	exon (NM_001376141, exon 9 of 12)	3138	NM_001376140	64427		NM_022492	ENSG00000115282	TTC31	-	tetratricopeptide repeat domain 31	protein-coding
112321	chr19	5898771	5899450	+	0	NA	intron (NM_175614, intron 1 of 3)	intron (NM_175614, intron 1 of 3)	4680	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
113288	chr19	8544671	8544830	+	0	NA	intron (NM_012335, intron 13 of 27)	intron (NM_012335, intron 13 of 27)	-30583	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
14953	chr1	147717151	147717650	+	0	NA	Intergenic	LTR18B|LTR|ERVL	43202	NM_181703	2702		NM_005266	ENSG00000265107	GJA5	ATFB11|CX40	gap junction protein alpha 5	protein-coding
1022	chr1	1866051	1866300	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSq2|SINE|Alu	24912	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
134220	chr2	134683751	134684050	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	35100	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
208721	chr7	73328371	73328530	+	0	NA	promoter-TSS (NM_178125)	promoter-TSS (NM_178125)	289	NM_001135211	8468		NM_003602	ENSG00000077800	FKBP6	FKBP36|SPGF77	FKBP prolyl isomerase family member 6 (inactive)	protein-coding
222722	chr8	141346151	141346250	+	0	NA	Intergenic	Intergenic	5651	NR_024441	731779		NR_024441	ENSG00000253595	LINC01300	-	long intergenic non-protein coding RNA 1300	ncRNA
225284	chr9	34461271	34461900	+	0	NA	intron (NM_012144, intron 1 of 19)	intron (NM_012144, intron 1 of 19)	2780	NM_012144	27019		NM_012144	ENSG00000122735	DNAI1	CILD1|DIC1|ICS1|PCD|oda6	dynein axonemal intermediate chain 1	protein-coding
97963	chr17	45240401	45241100	+	0	NA	intron (NM_005892, intron 12 of 26)	intron (NM_005892, intron 12 of 26)	-7175	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
39150	chr11	55986451	55986560	+	0	NA	promoter-TSS (NR_027688)	promoter-TSS (NR_027688)	-100	NR_027688	219445		NM_153024		OR7E5P	OR11-12|OR11-156|OR7F5P	olfactory receptor family 7 subfamily E member 5 pseudogene	pseudo
168437	chr3	142586701	142587200	+	0	NA	Intergenic	Intergenic	-8217	NM_001184	545		NM_001184	ENSG00000175054	ATR	FCTCS|FRP1|MEC1|SCKL|SCKL1	ATR serine/threonine kinase	protein-coding
111774	chr19	4403651	4403980	+	0	NA	intron (NM_005483, intron 1 of 14)	Charlie18a|DNA|hAT-Charlie	1175	NM_005483	10036		NM_005483	ENSG00000167670	CHAF1A	CAF-1|CAF1|CAF1B|CAF1P150|P150	chromatin assembly factor 1 subunit A	protein-coding
176103	chr4	83008501	83008950	+	0	NA	intron (NM_001115007, intron 1 of 12)	intron (NM_001115007, intron 1 of 12)	2098	NM_194282	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
38102	chr11	35218251	35218550	+	0	NA	intron (NM_001202557, intron 6 of 8)	AluSc|SINE|Alu	55450	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
71475	chr14	105939901	105940380	+	0	NA	Intergenic	Intergenic	22161	NR_026800	9834		NM_014151	ENSG00000226777	FAM30A	C14orf110|HSPC053|KIAA0125	family with sequence similarity 30 member A	ncRNA
94338	chr17	28852771	28853250	+	0	NA	Intergenic	AluSp|SINE|Alu	-2006	NM_001317985	26284		NM_005702	ENSG00000132591	ERAL1	CEGA|ERA|ERA-W|ERAL1A|ERAL1B|H-ERA|HERA-A|HERA-B|PRLTS6	Era like 12S mitochondrial rRNA chaperone 1	protein-coding
195101	chr6	35605201	35605730	+	0	NA	intron (NM_001145775, intron 6 of 11)	AluJo|SINE|Alu	59324	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
8940	chr1	44212701	44214230	+	0	NA	promoter-TSS (NM_001034023)	promoter-TSS (NM_001034023)	-6	NM_001034023	55929		NM_019100	ENSG00000178028	DMAP1	DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4	DNA methyltransferase 1 associated protein 1	protein-coding
116155	chr19	17388971	17389330	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-11808	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
172299	chr4	1573671	1574030	+	0	NA	Intergenic	Intergenic	110141	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
93074	chr17	17568801	17569000	+	0	NA	intron (NM_148172, intron 2 of 6)	intron (NM_148172, intron 2 of 6)	8596	NM_148173	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
84515	chr16	30513071	30513230	+	0	NA	intron (NM_002209, intron 24 of 30)	intron (NM_002209, intron 24 of 30)	9231	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
71323	chr14	105398021	105399830	+	0	NA	TTS (NM_015197)	TTS (NM_015197)	387	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
202077	chr6	154248421	154248680	+	0	NA	intron (NM_001130700, intron 3 of 11)	intron (NM_001130700, intron 3 of 11)	81531	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
49945	chr12	40033271	40033430	+	0	NA	intron (NM_052885, intron 2 of 9)	intron (NM_052885, intron 2 of 9)	72731	NM_052885	114134		NM_052885	ENSG00000151229	SLC2A13	HMIT	solute carrier family 2 member 13	protein-coding
117745	chr19	29660951	29661450	+	0	NA	Intergenic	Intergenic	-4261	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
132079	chr2	101297351	101298400	+	0	NA	intron (NM_173647, intron 1 of 6)	intron (NM_173647, intron 1 of 6)	10826	NM_173647	284996		NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
111673	chr19	4256451	4257150	+	0	NA	intron (NM_018074, intron 4 of 7)	MLT1F1|LTR|ERVL-MaLR	9720	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
10053	chr1	58697301	58698230	+	0	NA	intron (NM_001085487, intron 1 of 19)	AluSp|SINE|Alu	2297	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
205262	chr7	8135471	8135700	+	0	NA	intron (NR_146926, intron 12 of 13)	intron (NR_146926, intron 12 of 13)	126582	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
43101	chr11	74948571	74950200	+	0	NA	promoter-TSS (NM_001378162)	promoter-TSS (NM_001378162)	119	NM_014752	9789		NM_014752	ENSG00000118363	SPCS2	-	signal peptidase complex subunit 2	protein-coding
34799	chr11	265821	266100	+	0	NA	Intergenic	L1M5|LINE|L1	-12447	NM_001276700	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
1117	chr1	2121321	2122600	+	0	NA	intron (NM_001033582, intron 1 of 14)	CpG	17244	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
215050	chr7	152613271	152613430	+	0	NA	Intergenic	L1MA3|LINE|L1	62791	NM_005431	7516		NM_005431	ENSG00000196584	XRCC2	FANCU|POF17|SPGF50	X-ray repair cross complementing 2	protein-coding
105551	chr17	83203151	83203250	+	0	NA	Intergenic	Intergenic	-23697	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
189997	chr5	177466501	177466750	+	0	NA	intron (NM_004395, intron 8 of 13)	intron (NM_004395, intron 8 of 13)	-4199	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
225330	chr9	34623351	34624100	+	0	NA	intron (NM_001017363, intron 3 of 6)	CpG	-3202	NM_001281425	11258		NM_007234	ENSG00000137100	DCTN3	DCTN-22|DCTN22	dynactin subunit 3	protein-coding
171975	chr4	920101	920500	+	0	NA	intron (NM_005255, intron 1 of 27)	AluYm1|SINE|Alu	12016	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
51318	chr12	51323021	51323700	+	0	NA	intron (NM_001290007, intron 1 of 12)	intron (NM_001290007, intron 1 of 12)	814	NM_001290009	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
119648	chr19	40814851	40814950	+	0	NA	Intergenic	AluJb|SINE|Alu	-3800	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
16351	chr1	154324021	154326890	+	0	NA	promoter-TSS (NM_001370596)	promoter-TSS (NM_001370596)	-70	NM_001005855	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
110576	chr19	2150861	2153850	+	0	NA	promoter-TSS (NM_003938)	promoter-TSS (NM_003938)	-789	NM_001261826	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
224891	chr9	32385921	32386430	+	0	NA	intron (NM_002197, intron 1 of 20)	intron (NM_002197, intron 1 of 20)	1532	NM_001362840	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
131621	chr2	96954151	96954850	+	0	NA	intron (NM_001122646, intron 6 of 16)	intron (NM_001122646, intron 6 of 16)	32080	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
152470	chr22	20712221	20713130	+	0	NA	intron (NM_001362863, intron 48 of 53)	intron (NM_001362863, intron 48 of 53)	11561	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
102274	chr17	75295751	75296500	+	0	NA	Intergenic	MIR3|SINE|MIR	-6676	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
72716	chr15	38667721	38668530	+	0	NA	Intergenic	Intergenic	-28473	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
63911	chr14	21924521	21925330	+	0	NA	Intergenic	Intergenic	-253908	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
142471	chr20	4161751	4162050	+	0	NA	intron (NM_175840, intron 1 of 7)	intron (NM_175840, intron 1 of 7)	13072	NM_175839	54498		NM_019025	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
43808	chr11	86513001	86513400	+	0	NA	intron (NR_147828, intron 4 of 14)	intron (NR_147828, intron 4 of 14)	138313	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
52186	chr12	54329371	54329530	+	0	NA	intron (NM_001271734, intron 1 of 7)	AluSq2|SINE|Alu	4319	NM_016057	22818		NM_016057	ENSG00000111481	COPZ1	CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP	COPI coat complex subunit zeta 1	protein-coding
213318	chr7	135169051	135169590	+	0	NA	intron (NM_024033, intron 1 of 3)	intron (NM_024033, intron 1 of 3)	154	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
168896	chr3	152321171	152321750	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	19530	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
8338	chr1	40182901	40183230	+	0	NA	intron (NM_012421, intron 1 of 7)	intron (NM_012421, intron 1 of 7)	21678	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
232972	chr9	136969801	136971650	+	0	NA	intron (NR_157392, intron 2 of 4)	G-rich|Low_complexity|Low_complexity	1313	NR_157392	101928638		NM_001101674		LINC02692	C9orf141|PRR31	long intergenic non-protein coding RNA 2692	ncRNA
51582	chr12	52630501	52630950	+	0	NA	Intergenic	Intergenic	-12166	NM_175068	319101		NM_175068	ENSG00000186049	KRT73	CK-73|IRT6IRS3|K6IRS3|K73|KRT6IRS3	keratin 73	protein-coding
177944	chr4	138348171	138348330	+	0	NA	intron (NR_051987, intron 1 of 2)	intron (NR_051987, intron 1 of 2)	38539	NR_051987	100874047		NR_051987	ENSG00000251372	LINC00499	LINC00500	long intergenic non-protein coding RNA 499	ncRNA
135964	chr2	172090971	172091130	+	0	NA	Intergenic	Intergenic	5543	NM_178120	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
125087	chr2	9704871	9705230	+	0	NA	Intergenic	Intergenic	-74053	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
137177	chr2	191125521	191125800	+	0	NA	intron (NM_003151, intron 3 of 23)	AluJr4|SINE|Alu	25334	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
191430	chr6	10478401	10478630	+	0	NA	Intergenic	Intergenic	38798	NR_049872	100846998		NR_049872	ENSG00000263705	MIR5689	-	microRNA 5689	ncRNA
207179	chr7	43612821	43613980	+	0	NA	intron (NR_135582, intron 6 of 6)	MER2B|DNA|TcMar-Tigger	30292	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
30115	chr10	74002221	74002680	+	0	NA	intron (NM_014000, intron 1 of 21)	intron (NM_014000, intron 1 of 21)	4334	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
175236	chr4	56976201	56978400	+	0	NA	exon (NM_032313, exon 1 of 7)	exon (NM_032313, exon 1 of 7)	306	NM_032313	84273		NM_032313	ENSG00000084092	NOA1	C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1	nitric oxide associated 1	protein-coding
57170	chr12	121399471	121401280	+	0	NA	intron (NM_001256858, intron 1 of 4)	CpG	257	NM_194271	80196		NM_025126	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	ring finger protein 34	protein-coding
169185	chr3	156701671	156702030	+	0	NA	intron (NM_001184718, intron 4 of 5)	intron (NM_001184718, intron 4 of 5)	25186	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
202226	chr6	156809701	156809950	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-30094	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
210524	chr7	100227271	100227600	+	0	NA	intron (NR_166147, intron 2 of 4)	intron (NR_166147, intron 2 of 4)	8187	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
224397	chr9	14315101	14315880	+	0	NA	promoter-TSS (NR_161382)	promoter-TSS (NR_161382)	-536	NR_161382	4781		NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
170413	chr3	185577121	185577630	+	0	NA	Intergenic	AluSz|SINE|Alu	-8920	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
40385	chr11	64004951	64005050	+	0	NA	intron (NM_014067, intron 4 of 10)	MIR3|SINE|MIR	19147	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
44651	chr11	110328001	110328830	+	0	NA	Intergenic	LTR17|LTR|ERV1	-26699	NR_135100	105369486		NR_135100		LINC02732	-	long intergenic non-protein coding RNA 2732	ncRNA
60079	chr13	33817671	33818780	+	0	NA	promoter-TSS (NM_002915)	promoter-TSS (NM_002915)	76	NM_002915	5983		NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
55817	chr12	108839471	108839630	+	0	NA	intron (NM_001161330, intron 2 of 13)	intron (NM_001161330, intron 2 of 13)	-2544	NR_030350	693204		NR_030350	ENSG00000207622	MIR619	MIRN619|hsa-mir-619	microRNA 619	ncRNA
88690	chr16	85790651	85790750	+	0	NA	intron (NM_006067, intron 1 of 4)	intron (NM_006067, intron 1 of 4)	-1715	NR_135193	101928557		NR_135193	ENSG00000270159	LOC101928557	-	uncharacterized LOC101928557	ncRNA
145379	chr20	41182671	41183230	+	0	NA	3' UTR (NM_015035, exon 4 of 4)	3' UTR (NM_015035, exon 4 of 4)	13927	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
27244	chr10	29635601	29635900	+	0	NA	promoter-TSS (NM_021738)	promoter-TSS (NM_021738)	-779	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
84134	chr16	29713951	29714450	+	0	NA	Intergenic	Intergenic	31790	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
68030	chr14	75162601	75164100	+	0	NA	intron (NM_006827, intron 1 of 4)	AluSz|SINE|Alu	13262	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
173995	chr4	26316771	26317200	+	0	NA	intron (NM_001374401, intron 1 of 11)	intron (NM_001374401, intron 1 of 11)	-2761	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
182981	chr5	71757671	71758180	+	0	NA	Intergenic	Intergenic	38650	NM_004291	9607		NM_004291	ENSG00000164326	CARTPT	CART	CART prepropeptide	protein-coding
47321	chr12	1741801	1742250	+	0	NA	intron (NM_001375364, intron 2 of 8).2	intron (NM_001375364, intron 2 of 8).2	50955	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
215444	chr7	157775601	157776000	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	-78785	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
11088	chr1	85282171	85282880	+	0	NA	Intergenic	Intergenic	-5893	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
88665	chr16	85659621	85660500	+	0	NA	intron (NM_001278184, intron 7 of 14)	intron (NM_001278184, intron 7 of 14)	28894	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
164222	chr3	56925171	56925700	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	-8999	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
107968	chr18	58505051	58505700	+	0	NA	intron (NM_052947, intron 10 of 12)	L2|LINE|L2	-54223	NR_039899	100616357		NR_039899	ENSG00000207778	MIR3591	-	microRNA 3591	ncRNA
220899	chr8	106271201	106272200	+	0	NA	intron (NM_018002, intron 1 of 15)	intron (NM_018002, intron 1 of 15)	1522	NM_018002	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
113693	chr19	10410051	10410680	+	0	NA	Intergenic	AluJr|SINE|Alu	-6408	NM_001243121	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
110988	chr19	3030401	3030600	+	0	NA	promoter-TSS (NM_001144762)	promoter-TSS (NM_001144762)	-886	NM_001144762	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
153613	chr22	28009321	28009630	+	0	NA	intron (NM_001145418, intron 14 of 22)	intron (NM_001145418, intron 14 of 22)	-88863	NR_036169	100423034		NR_036169	ENSG00000264073	MIR3199-1	mir-3199-1	microRNA 3199-1	ncRNA
10786	chr1	77531671	77532030	+	0	NA	intron (NM_174858, intron 12 of 13)	LTR12C|LTR|ERV1	150808	NM_001376155	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
211726	chr7	107041921	107042530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2480	NM_002736	5577		NM_002736	ENSG00000005249	PRKAR2B	PRKAR2|RII-BETA	protein kinase cAMP-dependent type II regulatory subunit beta	protein-coding
129215	chr2	68229921	68230380	+	0	NA	intron (NM_000945, intron 1 of 5)	AluJb|SINE|Alu	22382	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
3248	chr1	13809371	13810130	+	0	NA	intron (NM_012231, intron 8 of 9)	MIR|SINE|MIR	60335	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
92601	chr17	9573971	9574530	+	0	NA	intron (NM_004853, intron 1 of 7)	AluSx3|SINE|Alu	1570	NM_004853	9482		NM_004853	ENSG00000170310	STX8	CARB	syntaxin 8	protein-coding
225766	chr9	37364771	37364950	+	0	NA	Intergenic	MIR3|SINE|MIR	-57836	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
65946	chr14	55584871	55585030	+	0	NA	intron (NM_001079521, intron 1 of 43)	AluJb|SINE|Alu	4743	NM_004986	3895		NM_004986	ENSG00000126777	KTN1	CG1|KNT|MU-RMS-40.19	kinectin 1	protein-coding
42999	chr11	73969771	73970540	+	0	NA	3' UTR (NM_001377263, exon 9 of 9)	3' UTR (NM_001377263, exon 9 of 9)	12688	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
64979	chr14	37598371	37598530	+	0	NA	intron (NM_001310135, intron 1 of 32)	CpG	2821	NM_001310135	319089		NM_001007795	ENSG00000139865	TTC6	C14orf25|NCRNA00291	tetratricopeptide repeat domain 6	protein-coding
227522	chr9	91419401	91419800	+	0	NA	intron (NM_001290000, intron 1 of 1)	MIRc|SINE|MIR	4232	NM_005384	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
114325	chr19	12059501	12059980	+	0	NA	Intergenic	Intergenic	-4991	NR_134326	284391		NM_001136501	ENSG00000223547	ZNF844	-	zinc finger protein 844	protein-coding
162018	chr3	46496771	46496950	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-1116	NM_031440	83597		NM_031440	ENSG00000163825	RTP3	LTM1|TMEM7|Z3CXXC3	receptor transporter protein 3	protein-coding
30534	chr10	79443501	79443700	+	0	NA	intron (NM_153367, intron 1 of 3)	intron (NM_153367, intron 1 of 3)	2024	NM_153367	219654		NM_153367	ENSG00000165424	ZCCHC24	C10orf56|Z3CXXC8	zinc finger CCHC-type containing 24	protein-coding
79221	chr16	365801	366000	+	0	NA	Intergenic	AluSc8|SINE|Alu	4638	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
112545	chr19	6535801	6536830	+	0	NA	TTS (NM_003811)	TTS (NM_003811)	5289	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
143052	chr20	21397021	21397800	+	0	NA	5' UTR (NM_033176, exon 1 of 2)	5' UTR (NM_033176, exon 1 of 2)	116	NM_033176	644524		NM_033176	ENSG00000125816	NKX2-4	NKX2.4|NKX2D	NK2 homeobox 4	protein-coding
153714	chr22	29286771	29287130	+	0	NA	exon (NM_013986, exon 8 of 18)	exon (NM_013986, exon 8 of 18)	18682	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
113794	chr19	10562771	10563330	+	0	NA	intron (NM_023008, intron 3 of 18)	AluSx1|SINE|Alu	2960	NM_023008	65095		NM_023008	ENSG00000129347	KRI1	-	KRI1 homolog	protein-coding
48508	chr12	9871971	9872330	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	-2291	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
55034	chr12	96389701	96390350	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSc5|SINE|Alu	10414	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
184492	chr5	100856321	100856780	+	0	NA	intron (NM_005668, intron 3 of 4)	intron (NM_005668, intron 3 of 4)	-39985	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
188964	chr5	163408351	163408780	+	0	NA	Intergenic	Intergenic	-29006	NM_001364022	900		NM_004060	ENSG00000113328	CCNG1	CCNG	cyclin G1	protein-coding
39411	chr11	60845921	60846180	+	0	NA	intron (NM_024098, intron 1 of 3)	MER3|DNA|hAT-Charlie	3937	NM_024098	79080		NM_024098	ENSG00000110104	CCDC86	Cgr1	coiled-coil domain containing 86	protein-coding
159024	chr3	10754051	10754330	+	0	NA	Intergenic	Intergenic	10019	NR_152730	285370		NR_027102	ENSG00000226567	LINC00606	-	long intergenic non-protein coding RNA 606	ncRNA
121469	chr19	47093321	47094100	+	0	NA	intron (NM_015168, intron 4 of 14)	AluJr|SINE|Alu	20066	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
225798	chr9	37510721	37511650	+	0	NA	3' UTR (NM_012166, exon 11 of 11)	3' UTR (NM_012166, exon 11 of 11)	25237	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
107640	chr18	48962601	48962800	+	0	NA	Intergenic	Intergenic	-11989	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
183514	chr5	79612001	79613230	+	0	NA	5' UTR (NM_001349554, exon 1 of 16)	5' UTR (NM_001349554, exon 1 of 16)	174	NM_001349554	167153		NM_173797	ENSG00000164329	TENT2	APD4|GLD2|PAPD4|TUT2	terminal nucleotidyltransferase 2	protein-coding
87123	chr16	68800201	68800950	+	0	NA	intron (NM_004360, intron 2 of 15)	intron (NM_004360, intron 2 of 15)	-42956	NM_024562	79613		NM_024562	ENSG00000103047	TANGO6	TMCO7	transport and golgi organization 6 homolog	protein-coding
28511	chr10	50335251	50335550	+	0	NA	intron (NM_147156, intron 7 of 10)	MIRb|SINE|MIR	-83884	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
115429	chr19	15309671	15309830	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	22789	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
159942	chr3	17154551	17154650	+	0	NA	Intergenic	Intergenic	221404	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
207146	chr7	43439801	43440080	+	0	NA	intron (NM_001287059, intron 8 of 27)	intron (NM_001287059, intron 8 of 27)	82602	NR_038276	100506895		NR_038276	ENSG00000231638	LUARIS	SCAT6|lncRNA32	lncRNA upregulator of antiviral response interferon signaling	ncRNA
144562	chr20	35745451	35745750	+	0	NA	Intergenic	L1MA4|LINE|L1	-3264	NR_136587	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
206756	chr7	36690071	36690230	+	0	NA	intron (NM_001177506, intron 1 of 21)	intron (NM_001177506, intron 1 of 21)	34344	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
6759	chr1	30739001	30739600	+	0	NA	promoter-TSS (NR_039616)	promoter-TSS (NR_039616)	-68	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
110549	chr19	2099701	2100980	+	0	NA	TTS (NM_001031735)	TTS (NM_001031735)	3425	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
20200	chr1	193119001	193119300	+	0	NA	Intergenic	L1MCa|LINE|L1	-2881	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
158278	chr22	50346151	50346450	+	0	NA	intron (NM_001351641, intron 1 of 23)	intron (NM_001351641, intron 1 of 23)	2973	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
25846	chr10	11229351	11229450	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	64370	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
112827	chr19	7523621	7524080	+	0	NA	intron (NM_020533, intron 1 of 13)	intron (NM_020533, intron 1 of 13)	1226	NM_020533	57192		NM_020533	ENSG00000090674	MCOLN1	LECD|MG-2|ML1|ML4|MLIV|MST080|MSTP080|TRP-ML1|TRPM-L1|TRPML1	mucolipin TRP cation channel 1	protein-coding
199704	chr6	125192321	125192600	+	0	NA	intron (NR_149043, intron 1 of 3)	intron (NR_149043, intron 1 of 3)	5357	NR_149043	100126584		NR_149043		LOC100126584	-	uncharacterized LOC100126584	ncRNA
31957	chr10	100715651	100716150	+	0	NA	Intergenic	Intergenic	-19496	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
24879	chr10	931101	933430	+	0	NA	promoter-TSS (NR_120629)	promoter-TSS (NR_120629)	-560	NM_015155	23185		NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	La ribonucleoprotein 4B	protein-coding
204454	chr7	4613201	4613600	+	0	NA	Intergenic	Intergenic	-68895	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
135132	chr2	157433221	157433850	+	0	NA	intron (NM_004288, intron 3 of 7)	intron (NM_004288, intron 3 of 7)	10554	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
52208	chr12	54373871	54374230	+	0	NA	exon (NM_001130967, exon 4 of 8)	exon (NM_001130967, exon 4 of 8)	-9564	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
239440	chrY	56705221	56705580	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-248855	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
32403	chr10	102440221	102440480	+	0	NA	Intergenic	AluJo|SINE|Alu	3838	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B|mir-146b	microRNA 146b	ncRNA
132046	chr2	101010621	101011050	+	0	NA	intron (NM_001330348, intron 19 of 19)	AluSg|SINE|Alu	8546	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
123448	chr19	54139871	54140230	+	0	NA	intron (NM_014516, intron 1 of 17).8	intron (NM_014516, intron 1 of 17).8	2288	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
96980	chr17	42265301	42265730	+	0	NA	intron (NM_012448, intron 1 of 18)	AluSc5|SINE|Alu	10876	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
145073	chr20	38633471	38634200	+	0	NA	intron (NM_001164431, intron 5 of 14)	intron (NM_001164431, intron 5 of 14)	32026	NM_001164431	343578		NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
166509	chr3	114326721	114326980	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-10281	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
144475	chr20	35611971	35612600	+	0	NA	Intergenic	AluSg|SINE|Alu	-3544	NM_003116	6676		NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
141156	chr2	239255871	239256030	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-49512	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
164197	chr3	56858471	56859230	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-56901	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
199953	chr6	127921501	127921700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2969	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
229385	chr9	121132621	121133880	+	0	NA	intron (NM_007018, intron 14 of 43)	L1PA6|LINE|L1	11480	NM_001330762	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
31435	chr10	95814501	95814900	+	0	NA	intron (NM_001312654, intron 2 of 9)	intron (NM_001312654, intron 2 of 9)	58537	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
46934	chr11	134346651	134347550	+	0	NA	intron (NM_138342, intron 4 of 19)	intron (NM_138342, intron 4 of 19)	15112	NM_001370463	89944		NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	galactosidase beta 1 like 2	protein-coding
95842	chr17	38814721	38814980	+	0	NA	intron (NM_017748, intron 3 of 9)	intron (NM_017748, intron 3 of 9)	10471	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
87788	chr16	75437501	75437900	+	0	NA	Intergenic	AluY|SINE|Alu	-4197	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
13710	chr1	116768201	116768400	+	0	NA	intron (NM_001328609, intron 4 of 4)	L2b|LINE|L2	13870	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
187470	chr5	142136501	142136700	+	0	NA	intron (NM_030571, intron 4 of 7)	AluSq2|SINE|Alu	27821	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
99613	chr17	50551621	50552280	+	0	NA	intron (NM_022827, intron 13 of 16)	intron (NM_022827, intron 13 of 16)	4776	NM_022827	64847		NM_022827	ENSG00000006282	SPATA20	HEL-S-98|SSP411|Tisp78	spermatogenesis associated 20	protein-coding
222895	chr8	142787171	142787330	+	0	NA	promoter-TSS (NM_003695)	promoter-TSS (NM_003695)	-711	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
61297	chr13	50230401	50230600	+	0	NA	intron (NR_109974, intron 2 of 6)	L1MB2|LINE|L1	58482	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
199603	chr6	119309101	119309300	+	0	NA	intron (NM_005907, intron 2 of 12)	intron (NM_005907, intron 2 of 12)	40561	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
71093	chr14	104874371	104875080	+	0	NA	intron (NM_001112726, intron 2 of 18)	intron (NM_001112726, intron 2 of 18)	9411	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
107996	chr18	58680971	58681330	+	0	NA	intron (NM_173844, intron 1 of 15)	intron (NM_173844, intron 1 of 15)	-9277	NR_164150	101927322		NR_164150	ENSG00000267226	MALT1-AS1	-	MALT1 antisense RNA 1	ncRNA
219112	chr8	65949321	65950230	+	0	NA	Intergenic	Intergenic	-65203	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
26260	chr10	14663651	14663950	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-59399	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
19166	chr1	171780751	171782930	+	0	NA	5' UTR (NM_015935, exon 1 of 8)	5' UTR (NM_015935, exon 1 of 8)	180	NM_014955	51603		NM_014955	ENSG00000010165	METTL13	5630401D24Rik|CGI-01|DFNB26|DFNB26M|DFNM1|EEF1AKNMT|KIAA0859|feat	methyltransferase 13, eEF1A N-terminus and K55	protein-coding
139081	chr2	218871401	218872450	+	0	NA	intron (NM_006522, intron 3 of 3)	intron (NM_006522, intron 3 of 3)	-8927	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
175178	chr4	56289871	56290230	+	0	NA	intron (NM_020722, intron 3 of 10)	intron (NM_020722, intron 3 of 10)	97441	NM_001323892	132949		NM_181806	ENSG00000157426	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
49031	chr12	14373121	14373700	+	0	NA	intron (NM_001286515, intron 1 of 12)	MLT1J|LTR|ERVL-MaLR	7728	NM_001286515	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
92309	chr17	8124201	8124800	+	0	NA	promoter-TSS (NM_001165967)	promoter-TSS (NM_001165967)	-394	NM_001165967	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
117469	chr19	19738371	19738730	+	0	NA	Intergenic	AluJo|SINE|Alu	-5438	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
168525	chr3	143970871	143972800	+	0	NA	promoter-TSS (NM_001363944)	promoter-TSS (NM_001363944)	12	NM_173552	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
106261	chr18	12375051	12375350	+	0	NA	intron (NM_006796, intron 1 of 16)	intron (NM_006796, intron 1 of 16)	2027	NM_006796	10939		NM_006796	ENSG00000141385	AFG3L2	OPA12|SCA28|SPAX5	AFG3 like matrix AAA peptidase subunit 2	protein-coding
230487	chr9	128230701	128231100	+	0	NA	intron (NM_001288739, intron 10 of 21)	AluSz|SINE|Alu	13930	NR_029619	406978		NR_029619	ENSG00000207581	MIR199B	MIRN199B|mir-199b	microRNA 199b	ncRNA
147719	chr20	62371001	62372050	+	0	NA	Intergenic	Intergenic	-4213	NM_005560	3911		NM_005560	ENSG00000130702	LAMA5	BBDS2|NPHS26	laminin subunit alpha 5	protein-coding
100489	chr17	61861901	61862250	+	0	NA	intron (NM_032043, intron 1 of 19)	MIRb|SINE|MIR	1453	NM_032043	83990		NM_032043	ENSG00000136492	BRIP1	BACH1|FANCJ|OF	BRCA1 interacting helicase 1	protein-coding
144766	chr20	36618901	36619100	+	0	NA	intron (NM_175077, intron 5 of 7)	AluSz|SINE|Alu	13221	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
114416	chr19	12664951	12665600	+	0	NA	intron (NM_001173498, intron 3 of 23)	intron (NM_001173498, intron 3 of 23)	1467	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
154496	chr22	35660071	35661880	+	0	NA	3' UTR (NM_030641, exon 3 of 3)	3' UTR (NM_030641, exon 3 of 3)	12529	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
64602	chr14	30522001	30522500	+	0	NA	intron (NR_151720, intron 3 of 3)	intron (NR_151720, intron 3 of 3)	-36873	NM_001308097	55632		NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
206552	chr7	35646371	35646750	+	0	NA	intron (NM_022373, intron 5 of 8)	AluJr|SINE|Alu	48575	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
26295	chr10	14959121	14960680	+	0	NA	intron (NR_147060, intron 1 of 2)	intron (NR_147060, intron 1 of 2)	512	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
167040	chr3	126607221	126607750	+	0	NA	3' UTR (NM_052883, exon 16 of 16)	3' UTR (NM_052883, exon 16 of 16)	47639	NM_052883	114112		NM_052883	ENSG00000197763	TXNRD3	TGR|TR2|TR2IT1|TRXR3|TXNR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1	thioredoxin reductase 3	protein-coding
119667	chr19	40833321	40834130	+	0	NA	Intergenic	LTR15|LTR|ERV1	16722	NM_000762	1548		NM_000762	ENSG00000255974	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450 family 2 subfamily A member 6	protein-coding
146464	chr20	49708121	49708380	+	0	NA	intron (NM_004776, intron 1 of 8)	AluSx1|SINE|Alu	5628	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
116714	chr19	18447101	18447580	+	0	NA	intron (NM_006532, intron 8 of 11)	intron (NM_006532, intron 8 of 11)	-9207	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
156794	chr22	41912851	41913150	+	0	NA	intron (NM_001207020, intron 1 of 3)	intron (NM_001207020, intron 1 of 3)	2074	NM_001353438	440829		NM_001207020	ENSG00000234965	SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
223208	chr8	143586271	143587100	+	0	NA	intron (NM_032378, intron 4 of 9)	intron (NM_032378, intron 4 of 9)	-8355	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
229559	chr9	122989071	122989500	+	0	NA	intron (NM_012197, intron 4 of 25)	intron (NM_012197, intron 4 of 25)	-44382	NM_005294	2844		NM_005294	ENSG00000188394	GPR21	-	G protein-coupled receptor 21	protein-coding
84840	chr16	31121001	31121330	+	0	NA	intron (NM_032188, intron 3 of 10)	AluSx1|SINE|Alu	3501	NM_032188	84148		NM_032188	ENSG00000103510	KAT8	LIGOWS|MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
87316	chr16	70202271	70202430	+	0	NA	Intergenic	Intergenic	14028	NR_135173	105371328		NR_135173		LOC105371328	-	uncharacterized LOC105371328	ncRNA
224379	chr9	8414851	8414950	+	0	NA	intron (NM_130391, intron 21 of 31)	GA-rich|Low_complexity|Low_complexity	319046	NM_130393	5789		NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|R-PTP-delta|RPTPDELTA	protein tyrosine phosphatase receptor type D	protein-coding
8895	chr1	43930501	43931080	+	0	NA	non-coding (NR_073023, exon 9 of 9)	non-coding (NR_073023, exon 9 of 9)	-2530	NM_057090	9048		NM_003976	ENSG00000117407	ARTN	ART|ENOVIN|EVN|NBN	artemin	protein-coding
44359	chr11	102450501	102451100	+	0	NA	intron (NM_052932, intron 1 of 4)	MIRb|SINE|MIR	1965	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
70436	chr14	102042801	102043000	+	0	NA	intron (NM_001376, intron 69 of 77)	intron (NM_001376, intron 69 of 77)	44144	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
198451	chr6	106117501	106118700	+	0	NA	Intergenic	MER30|DNA|hAT-Charlie	19159	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
150339	chr21	42120421	42120680	+	0	NA	intron (NM_173568, intron 14 of 21)	intron (NM_173568, intron 14 of 21)	-12016	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
149489	chr21	32406071	32406500	+	0	NA	Intergenic	AluSx|SINE|Alu	-5438	NM_001320745	59271		NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21	eva-1 homolog C	protein-coding
139200	chr2	219253501	219254400	+	0	NA	promoter-TSS (NM_006000)	promoter-TSS (NM_006000)	-32	NM_006000	7277		NM_006000	ENSG00000127824	TUBA4A	ALS22|H2-ALPHA|TUBA1	tubulin alpha 4a	protein-coding
234642	chrX	20067101	20067400	+	0	NA	intron (NM_152780, intron 1 of 15)	intron (NM_152780, intron 1 of 15)	49390	NM_001168467	256714		NM_152780	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
66673	chr14	63927301	63927500	+	0	NA	intron (NM_015180, intron 2 of 114)	THE1B|LTR|ERVL-MaLR	74396	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
98711	chr17	47967601	47968000	+	0	NA	Intergenic	Intergenic	-2728	NM_001278197	80279		NM_025197	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding
56330	chr12	112906471	112907950	+	0	NA	exon (NM_001032409, exon 1 of 6)	exon (NM_001032409, exon 1 of 6)	248	NM_001320151	4938		NM_002534	ENSG00000089127	OAS1	E18/E16|IFI-4|IMD100|OIAS|OIASI	2'-5'-oligoadenylate synthetase 1	protein-coding
145397	chr20	41436801	41437000	+	0	NA	intron (NM_032221, intron 27 of 36)	L1MD1|LINE|L1	-70082	NM_052846	90187		NM_052846	ENSG00000183798	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
172026	chr4	992771	993430	+	0	NA	intron (NM_213613, intron 1 of 3)	intron (NM_213613, intron 1 of 3)	304	NM_134425	10861		NM_022042	ENSG00000145217	SLC26A1	CAON|CAON1|EDM4|HYSULF|SAT-1|SAT1	solute carrier family 26 member 1	protein-coding
203621	chr7	954021	955250	+	0	NA	promoter-TSS (NM_006869)	promoter-TSS (NM_006869)	45	NM_006869	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
176915	chr4	102810001	102810200	+	0	NA	intron (NM_181893, intron 1 of 6)	intron (NM_181893, intron 1 of 6)	15760	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
47629	chr12	6188751	6189250	+	0	NA	Intergenic	MIRc|SINE|MIR	-10946	NM_001330312	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
147687	chr20	62312101	62312300	+	0	NA	exon (NM_005560, exon 69 of 80)	exon (NM_005560, exon 69 of 80)	9203	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
89444	chr16	88976601	88977000	+	0	NA	exon (NM_005187, exon 1 of 12)	exon (NM_005187, exon 1 of 12)	407	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
154837	chr22	37074951	37075250	+	0	NA	intron (NM_153609, intron 11 of 17)	intron (NM_153609, intron 11 of 17)	23364	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
156693	chr22	41674201	41674680	+	0	NA	3' UTR (NM_005008, exon 4 of 4)	3' UTR (NM_005008, exon 4 of 4)	14427	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
38968	chr11	47548251	47548350	+	0	NA	intron (NM_001376458, intron 1 of 13)	AluSg4|SINE|Alu	4832	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
116613	chr19	18283821	18284250	+	0	NA	Intergenic	AluY|SINE|Alu	1958	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
43607	chr11	83173201	83174450	+	0	NA	intron (NM_015885, intron 9 of 15)	AluSx|SINE|Alu	13659	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
220877	chr8	103444371	103444530	+	0	NA	TTS (NM_015420)	TTS (NM_015420)	29064	NM_015420	25879		NM_015420	ENSG00000164934	DCAF13	GM83|HSPC064|Sof1|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
180263	chr5	1763601	1763850	+	0	NA	Intergenic	Intergenic	36112	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
232788	chr9	136696821	136697880	+	0	NA	Intergenic	Intergenic	-9893	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
51053	chr12	49796651	49796950	+	0	NA	exon (NM_001368048, exon 9 of 14)	exon (NM_001368048, exon 9 of 14)	31613	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
1225	chr1	2272671	2274630	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	45331	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
5017	chr1	24485751	24487050	+	0	NA	Intergenic	Intergenic	-15944	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
23242	chr1	227789651	227790150	+	0	NA	non-coding (NR_168380, exon 2 of 2)	non-coding (NR_168380, exon 2 of 2)	1380	NR_168384	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
150033	chr21	37358171	37358530	+	0	NA	Intergenic	Intergenic	-7223	NM_001396	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
45182	chr11	117314271	117314650	+	0	NA	intron (NM_138972, intron 1 of 8)	intron (NM_138972, intron 1 of 8)	1796	NM_138972	23621		NM_012104	ENSG00000186318	BACE1	ASP2|BACE|HSPC104	beta-secretase 1	protein-coding
152335	chr22	20422101	20422300	+	0	NA	Intergenic	Intergenic	15625	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
10318	chr1	64887821	64888550	+	0	NA	intron (NM_001321852, intron 1 of 24)	AluSc|SINE|Alu	78364	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
224073	chr9	4228671	4228830	+	0	NA	intron (NM_001042413, intron 2 of 10)	intron (NM_001042413, intron 2 of 10)	71318	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
189690	chr5	176414021	176414350	+	0	NA	intron (NM_007097, intron 1 of 5)	intron (NM_007097, intron 1 of 5)	2354	NM_007097	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
18745	chr1	167485751	167485850	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	32729	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
197344	chr6	73441971	73442130	+	0	NA	intron (NM_138441, intron 2 of 4)	AluSz|SINE|Alu	10247	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
205584	chr7	21426301	21427500	+	0	NA	Intergenic	Intergenic	-1183	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
164179	chr3	56797651	56797750	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	4249	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
225475	chr9	35609101	35609300	+	0	NA	TTS (NM_001782)	TTS (NM_001782)	1106	NR_039813	100616214		NR_039813	ENSG00000263892	MIR4667	mir-4667	microRNA 4667	ncRNA
36855	chr11	10366471	10366870	+	0	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	58357	NR_103765	100130460		NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
131508	chr2	96545751	96545850	+	0	NA	intron (NM_001319092, intron 1 of 6)	AluSx4|SINE|Alu	7921	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
215007	chr7	152380371	152380530	+	0	NA	intron (NM_170606, intron 1 of 58)	AluSq2|SINE|Alu	55553	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
57527	chr12	122137651	122138280	+	0	NA	intron (NM_014938, intron 12 of 16)	intron (NM_014938, intron 12 of 16)	-29754	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
8597	chr1	41513401	41513600	+	0	NA	exon (NM_024503, exon 8 of 9)	exon (NM_024503, exon 8 of 9)	-28817	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
48346	chr12	9340851	9341880	+	0	NA	Intergenic	Intergenic	-26099	NR_120479	101930452		NR_120479	ENSG00000260423	LINC02367	-	long intergenic non-protein coding RNA 2367	ncRNA
105928	chr18	3498921	3499650	+	0	NA	exon (NM_001242764, exon 10 of 10)	exon (NM_001242764, exon 10 of 10)	33035	NR_110429	100505592		NR_110428	ENSG00000266835	GAPLINC	LINC01540	gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA	ncRNA
10582	chr1	67341771	67341930	+	0	NA	intron (NM_001374259, intron 9 of 16)	intron (NM_001374259, intron 9 of 16)	33977	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
41015	chr11	65429951	65430570	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	7462	NR_131012	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
24167	chr1	235872601	235873830	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	-6309	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
191840	chr6	15024901	15025100	+	0	NA	Intergenic	AluJo|SINE|Alu	-221069	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
53509	chr12	66708851	66709580	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-30139	NM_001178074	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
237976	chrX	134172701	134173530	+	0	NA	Intergenic	Intergenic	-2837	NR_029523	406899		NR_029523	ENSG00000284157	MIR106A	MIRN106A|mir-106|mir-106a	microRNA 106a	ncRNA
135513	chr2	162018571	162018730	+	0	NA	intron (NR_166824, intron 16 of 25)	intron (NR_166824, intron 16 of 25)	55565	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
148265	chr20	63681851	63682150	+	0	NA	intron (NM_032957, intron 14 of 34)	intron (NM_032957, intron 14 of 34)	-14652	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
191375	chr6	7344901	7345300	+	0	NA	intron (NM_001170692, intron 11 of 13)	LTR12C|LTR|ERV1	-31901	NM_001292008	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
211522	chr7	105331801	105332000	+	0	NA	intron (NM_001350742, intron 2 of 16)	AluSx|SINE|Alu	-33121	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
186594	chr5	138508151	138508250	+	0	NA	non-coding (NR_157090, exon 10 of 10)	non-coding (NR_157090, exon 10 of 10)	33511	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
125251	chr2	10412001	10412830	+	0	NA	intron (NM_134421, intron 3 of 5)	MLT1J2|LTR|ERVL-MaLR	34434	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
93246	chr17	17935151	17935530	+	0	NA	intron (NM_001082968, intron 1 of 14)	intron (NM_001082968, intron 1 of 14)	37060	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
115204	chr19	14475121	14476200	+	0	NA	promoter-TSS (NM_000955)	promoter-TSS (NM_000955)	-306	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
225562	chr9	35912721	35913880	+	0	NA	Intergenic	Intergenic	3810	NM_001348107	158376		NM_001348107	ENSG00000235387	SPAAR	LINC00961|SPAR	small regulatory polypeptide of amino acid response	protein-coding
233125	chr9	137145151	137145250	+	0	NA	intron (NM_007327, intron 2 of 19)	intron (NM_007327, intron 2 of 19)	6046	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
5122	chr1	24884421	24884680	+	0	NA	Intergenic	L1MB5|LINE|L1	34866	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
12023	chr1	96763421	96763680	+	0	NA	intron (NM_001300986, intron 3 of 13)	SVA_D|Retroposon|SVA	40912	NR_125356	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
86612	chr16	67390371	67390830	+	0	NA	exon (NM_015964, exon 3 of 4)	exon (NM_015964, exon 3 of 4)	2898	NM_015964	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
2964	chr1	11925571	11926780	+	0	NA	exon (NM_138346, exon 1 of 3)	exon (NM_138346, exon 1 of 3)	252	NM_138346	90231		NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
102485	chr17	75743121	75743380	+	0	NA	intron (NM_001005619, intron 24 of 38)	AluSx1|SINE|Alu	18554	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
227726	chr9	93052921	93053730	+	0	NA	Intergenic	Intergenic	-5363	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
144798	chr20	36645701	36647430	+	0	NA	promoter-TSS (NM_032214)	promoter-TSS (NM_032214)	-369	NM_032214	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
46770	chr11	129862751	129863250	+	0	NA	TTS (NM_006165)	TTS (NM_006165)	30009	NM_006165	4798		NM_006165	ENSG00000170322	NFRKB	INO80G	nuclear factor related to kappaB binding protein	protein-coding
122574	chr19	49679971	49680130	+	0	NA	intron (NR_033397, intron 2 of 11)	intron (NR_033397, intron 2 of 11)	-2067	NR_049811	100847074		NR_049811	ENSG00000274306	MIR5088	mir-5088	microRNA 5088	ncRNA
154468	chr22	35551671	35551900	+	0	NA	exon (NM_014310, exon 3 of 3)	exon (NM_014310, exon 3 of 3)	10954	NM_014310	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
73149	chr15	41412971	41413330	+	0	NA	Intergenic	AluJr|SINE|Alu	-3954	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
168847	chr3	152272621	152273250	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-3309	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
38324	chr11	44164951	44165050	+	0	NA	intron (NM_001178083, intron 8 of 14)	AluYa5|SINE|Alu	68803	NM_000401	2132		NM_000401	ENSG00000151348	EXT2	SOTV|SSMS	exostosin glycosyltransferase 2	protein-coding
25427	chr10	6573321	6573780	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	6726	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
189946	chr5	177402151	177402850	+	0	NA	intron (NM_000505, intron 13 of 13)	CpG	-1839	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
235885	chrX	52150371	52150800	+	0	NA	Intergenic	L1PA4|LINE|L1	-34238	NM_001242362	81557		NM_030801	ENSG00000187243	MAGED4B	-	MAGE family member D4B	protein-coding
216730	chr8	22442571	22443100	+	0	NA	intron (NM_005605, intron 1 of 13)	Tigger15a|DNA|TcMar-Tigger	1757	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
219533	chr8	76308451	76308630	+	0	NA	Intergenic	L1PA2|LINE|L1	-98114	NR_105006	101926978		NR_105006	ENSG00000254300	LINC01111	-	long intergenic non-protein coding RNA 1111	ncRNA
17220	chr1	156279771	156279930	+	0	NA	intron (NM_001323617, intron 2 of 22)	MIR|SINE|MIR	2975	NM_015327	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
102618	chr17	75976601	75977250	+	0	NA	intron (NM_007292, intron 2 of 13)	intron (NM_007292, intron 2 of 13)	2241	NM_004035	51		NM_004035	ENSG00000161533	ACOX1	ACOX|AOX|MITCH|PALMCOX|SCOX	acyl-CoA oxidase 1	protein-coding
180686	chr5	21481651	21481950	+	0	NA	intron (NR_027026, intron 3 of 4)	intron (NR_027026, intron 3 of 4)	22320	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
209883	chr7	91482171	91482350	+	0	NA	Intergenic	L1PA3|LINE|L1	217827	NM_003505	8321		NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
222526	chr8	140572071	140572930	+	0	NA	intron (NM_012154, intron 3 of 18)	intron (NM_012154, intron 3 of 18)	60504	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
46250	chr11	124741601	124742330	+	0	NA	intron (NM_006176, intron 1 of 3)	intron (NM_006176, intron 1 of 3)	2023	NM_001126181	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
140515	chr2	233212721	233212980	+	0	NA	Intergenic	Intergenic	-38721	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
168341	chr3	141878601	141879100	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	2207	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
127774	chr2	44173821	44174280	+	0	NA	intron (NM_177969, intron 1 of 4)	intron (NM_177969, intron 1 of 4)	5175	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
174240	chr4	37922421	37922680	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	31466	NM_001253912	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
96482	chr17	40280871	40281030	+	0	NA	3' UTR (NM_133264, exon 8 of 8)	3' UTR (NM_133264, exon 8 of 8)	-6929	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
181583	chr5	43309321	43309900	+	0	NA	intron (NM_001324224, intron 1 of 9)	intron (NM_001324224, intron 1 of 9)	3571	NM_001330663	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
54239	chr12	82327071	82327250	+	0	NA	Intergenic	Intergenic	31227	NM_014167	29080		NM_014167	ENSG00000133773	CCDC59	BR22|HSPC128|TAP26	coiled-coil domain containing 59	protein-coding
62666	chr13	102591901	102593350	+	0	NA	Intergenic	Intergenic	-4361	NM_003291	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
139814	chr2	230347001	230347200	+	0	NA	intron (NM_138402, intron 2 of 18)	L1M2|LINE|L1	19907	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
30476	chr10	79241201	79241400	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-106169	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
194623	chr6	33569651	33569750	+	0	NA	Intergenic	AluSp|SINE|Alu	10576	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
202393	chr6	157841501	157841700	+	0	NA	intron (NM_016224, intron 1 of 17)	MER54A|LTR|ERVL	18354	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
121745	chr19	47743251	47744180	+	0	NA	TTS (NM_014601)	TTS (NM_014601)	-1831	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
73347	chr15	42118971	42119130	+	0	NA	Intergenic	L1M7|LINE|L1	-24488	NM_178034	283748		NM_178034	ENSG00000159337	PLA2G4D	cPLA2delta	phospholipase A2 group IVD	protein-coding
188513	chr5	155616821	155617080	+	0	NA	Intergenic	Intergenic	603195	NM_001099293	285643		NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
86435	chr16	66894151	66894500	+	0	NA	Intergenic	Intergenic	13810	NM_020786	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
97072	chr17	42383551	42383650	+	0	NA	intron (NM_001369516, intron 1 of 23)	intron (NM_001369516, intron 1 of 23)	4842	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
200095	chr6	130188271	130189150	+	0	NA	intron (NM_001258275, intron 7 of 13)	L2|LINE|L2	27175	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
54988	chr12	96346501	96347080	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSc|SINE|Alu	53649	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
123467	chr19	54157801	54158000	+	0	NA	intron (NM_024316, intron 2 of 3).2	AluSx|SINE|Alu	1821	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
58809	chr12	132809371	132809830	+	0	NA	intron (NM_005895, intron 4 of 23)	LTR13|LTR|ERVK	18789	NM_005895	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
224346	chr9	6869371	6869730	+	0	NA	intron (NR_148677, intron 5 of 21)	LTR16A|LTR|ERVL	111577	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
156288	chr22	40479351	40479650	+	0	NA	intron (NM_001282661, intron 3 of 13)	LTR9|LTR|ERV1	-16060	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
171641	chr3	197602851	197602950	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	24981	NR_003266	220729		NR_003266	ENSG00000291091	SDHAP4	-	SDHA pseudogene 4	pseudo
72388	chr15	31376371	31376530	+	0	NA	3' UTR (NM_015995, exon 2 of 2)	3' UTR (NM_015995, exon 2 of 2)	49615	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
220658	chr8	101127971	101128830	+	0	NA	Intergenic	Intergenic	41839	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
86957	chr16	68124401	68124600	+	0	NA	intron (NM_173165, intron 2 of 9)	AluY|SINE|Alu	39130	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
196426	chr6	43450071	43450430	+	0	NA	TTS (NM_001286656)	TTS (NM_001286656)	5298	NM_023932	65989		NM_023932	ENSG00000171462	DLK2	DLK-2|EGFL9	delta like non-canonical Notch ligand 2	protein-coding
24369	chr1	241627641	241628190	+	0	NA	TTS (NM_001381853)	TTS (NM_001381853)	8279	NM_001821	1122		NM_001821	ENSG00000203668	CHML	REP2	CHM like Rab escort protein	protein-coding
61464	chr13	52195301	52196050	+	0	NA	Intergenic	CpG	-1208	NR_002816	100887750		NR_002816	ENSG00000291010	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
193395	chr6	30406221	30406550	+	0	NA	Intergenic	HERVK14-int|LTR|ERVK	61229	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
109515	chr19	842551	842650	+	0	NA	intron (NM_002777, intron 1 of 4)	AluSc|SINE|Alu	1601	NM_002777	5657		NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
127673	chr2	43186421	43186680	+	0	NA	Intergenic	Intergenic	40056	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
27283	chr10	30348771	30349930	+	0	NA	promoter-TSS (NM_018109)	promoter-TSS (NM_018109)	-72	NM_018109	55149		NM_018109	ENSG00000107951	MTPAP	PAPD1|SPAX4|TENT6	mitochondrial poly(A) polymerase	protein-coding
158136	chr22	50175951	50176250	+	0	NA	intron (NR_027691, intron 2 of 4)	intron (NR_027691, intron 2 of 4)	5369	NM_052839	56666		NM_052839	ENSG00000073150	PANX2	PX2|hPANX2	pannexin 2	protein-coding
207222	chr7	43664371	43664930	+	0	NA	intron (NM_001371313, intron 1 of 8)	AluJo|SINE|Alu	64873	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
1277	chr1	2319671	2320280	+	0	NA	Intergenic	Intergenic	32686	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
110772	chr19	2417451	2418880	+	0	NA	intron (NM_001385642, intron 13 of 17)	intron (NM_001385642, intron 13 of 17)	9421	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
237588	chrX	123858771	123858930	+	0	NA	promoter-TSS (NM_001204401)	promoter-TSS (NM_001204401)	-858	NR_165803	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
146008	chr20	46589171	46589330	+	0	NA	exon (NM_001011554, exon 8 of 14)	exon (NM_001011554, exon 8 of 14)	-38596	NM_080721	128506		NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
35588	chr11	1734351	1734850	+	0	NA	3' UTR (NM_001170820, exon 3 of 3)	3' UTR (NM_001170820, exon 3 of 3)	15995	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
26486	chr10	17685351	17685680	+	0	NA	intron (NM_001324289, intron 3 of 13)	LTR42|LTR|ERVL	41364	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
179059	chr4	165464571	165465000	+	0	NA	intron (NM_001873, intron 2 of 8)	intron (NM_001873, intron 2 of 8)	78543	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
220908	chr8	106668601	106668830	+	0	NA	intron (NM_181354, intron 1 of 13)	intron (NM_181354, intron 1 of 13)	10907	NM_181354	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
236131	chrX	57906371	57907050	+	0	NA	3' UTR (NM_007156, exon 1 of 1)	3' UTR (NM_007156, exon 1 of 1)	3748	NM_007156	7789		NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger X-linked duplicated A	protein-coding
22080	chr1	211381201	211381800	+	0	NA	Intergenic	L1MEd|LINE|L1	-1255	NR_026761	84791		NM_032705	ENSG00000153363	LINC00467	ASAP|C1orf97	long intergenic non-protein coding RNA 467	ncRNA
35312	chr11	1030301	1030500	+	0	NA	intron (NM_005961, intron 7 of 32)	intron (NM_005961, intron 7 of 32)	6318	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
215834	chr8	6729251	6729850	+	0	NA	intron (NM_018361, intron 2 of 7)	intron (NM_018361, intron 2 of 7)	-15614	NR_039803	100616348		NR_039803	ENSG00000266038	MIR4659A	mir-4659a	microRNA 4659a	ncRNA
216366	chr8	17651721	17651980	+	0	NA	intron (NR_156437, intron 11 of 13)	intron (NR_156437, intron 11 of 13)	24651	NM_001330470	57509		NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1	microtubule associated scaffold protein 1	protein-coding
137924	chr2	201022001	201022200	+	0	NA	5' UTR (NM_001321628, exon 5 of 14)	5' UTR (NM_001321628, exon 5 of 14)	49571	NM_001321619	285172		NM_173822	ENSG00000155744	HYCC2	FAM126B	hyccin PI4KA lipid kinase complex subunit 2	protein-coding
95211	chr17	35246351	35246880	+	0	NA	intron (NM_144975, intron 1 of 4)	AluSx1|SINE|Alu	3543	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
91219	chr17	3926021	3926680	+	0	NA	intron (NM_005173, intron 20 of 20)	intron (NM_005173, intron 20 of 20)	-9885	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
160171	chr3	23219671	23219830	+	0	NA	intron (NM_001370225, intron 3 of 5)	intron (NM_001370225, intron 3 of 5)	16423	NM_001370228	7325		NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
71116	chr14	104929151	104929250	+	0	NA	intron (NM_001308174, intron 4 of 10)	intron (NM_001308174, intron 4 of 10)	4321	NM_001308174	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
50088	chr12	44838771	44839130	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	36711	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
51786	chr12	53352451	53353350	+	0	NA	Intergenic	Intergenic	-8107	NM_001300837	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
194724	chr6	33807471	33807830	+	0	NA	Intergenic	Intergenic	-3647	NM_001040109	4295		NM_002418	ENSG00000096395	MLN	-	motilin	protein-coding
72512	chr15	34038201	34039830	+	0	NA	exon (NM_020371, exon 1 of 6)	exon (NM_020371, exon 1 of 6)	189	NM_020371	57099		NM_020371	ENSG00000169857	AVEN	PDCD12	apoptosis and caspase activation inhibitor	protein-coding
27076	chr10	27238901	27239130	+	0	NA	intron (NM_001352582, intron 2 of 11)	AluSp|SINE|Alu	1471	NM_001301252	91452		NM_145698	ENSG00000107897	ACBD5	RDLKD	acyl-CoA binding domain containing 5	protein-coding
134118	chr2	134125371	134125800	+	0	NA	intron (NM_001371457, intron 1 of 16)	MIR1_Amn|SINE|MIR	-1540	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
144330	chr20	34985271	34985630	+	0	NA	intron (NM_020884, intron 13 of 44)	intron (NM_020884, intron 13 of 44)	-4926	NR_030223	574501		NR_030223	ENSG00000207635	MIR499A	MIR499|MIRN499|hsa-mir-499a|mir-499a	microRNA 499a	ncRNA
123838	chr19	55228671	55229030	+	0	NA	promoter-TSS (NM_001372013)	promoter-TSS (NM_001372013)	-87	NM_173804	255043		NM_173804	ENSG00000180089	TMEM86B	-	transmembrane protein 86B	protein-coding
158614	chr3	4850251	4851880	+	0	NA	Intergenic	Intergenic	55436	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
118694	chr19	38142471	38142780	+	0	NA	exon (NM_015073, exon 12 of 22)	exon (NM_015073, exon 12 of 22)	-20471	NR_145800	109623473		NR_145800		SNORD152	-	small nucleolar RNA, C/D box 152	snoRNA
12393	chr1	101285801	101286380	+	0	NA	Intergenic	Intergenic	-37747	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
145891	chr20	45954901	45955530	+	0	NA	intron (NM_022095, intron 17 of 27)	AluY|SINE|Alu	16988	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
119305	chr19	39835471	39835630	+	0	NA	intron (NM_001436, intron 7 of 8)	MSTD|LTR|ERVL-MaLR	-1317	NM_006484	9149		NM_004714	ENSG00000105204	DYRK1B	AOMS3|MIRK	dual specificity tyrosine phosphorylation regulated kinase 1B	protein-coding
55618	chr12	106985471	106985830	+	0	NA	intron (NM_001033050, intron 1 of 2)	L2c|LINE|L2	1496	NM_001033050	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
232294	chr9	134454871	134455030	+	0	NA	Intergenic	MER77|LTR|ERVL	48390	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
38094	chr11	35209421	35209680	+	0	NA	intron (NM_001001389, intron 11 of 16)	intron (NM_001001389, intron 11 of 16)	46600	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
175062	chr4	54034471	54034830	+	0	NA	intron (NM_012110, intron 3 of 5)	L1M5|LINE|L1	29955	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
137042	chr2	190875571	190876200	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-4936	NM_001256310	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
16659	chr1	155174201	155175030	+	0	NA	promoter-TSS (NM_001256601)	promoter-TSS (NM_001256601)	21	NR_046329	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
189979	chr5	177449321	177450380	+	0	NA	intron (NM_001174102, intron 1 of 2)	intron (NM_001174102, intron 1 of 2)	1525	NM_001174102	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
205036	chr7	6530751	6532050	+	0	NA	intron (NM_001145118, intron 2 of 21)	CpG	20036	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
216398	chr8	17935271	17935430	+	0	NA	intron (NM_001352656, intron 4 of 27)	intron (NM_001352656, intron 4 of 27)	12362	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
128991	chr2	64748251	64748980	+	0	NA	Intergenic	Intergenic	-94702	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
187335	chr5	141650711	141652330	+	0	NA	promoter-TSS (NM_033449)	promoter-TSS (NM_033449)	-102	NM_033449	89848		NM_033449	ENSG00000197948	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
102992	chr17	76739821	76740330	+	0	NA	intron (NR_148239, intron 3 of 12)	AluY|SINE|Alu	2397	NM_001242532	79157		NM_024311	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
154004	chr22	30411701	30412100	+	0	NA	intron (NM_033382, intron 8 of 10)	L2c|LINE|L2	-13868	NM_001003704	51537		NM_016498	ENSG00000242114	MTFP1	HSPC242|MTP18	mitochondrial fission process 1	protein-coding
220371	chr8	99887021	99887280	+	0	NA	intron (NM_004374, intron 3 of 3)	Tigger5b|DNA|TcMar-Tigger	6557	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
151684	chr22	17147421	17147680	+	0	NA	intron (NM_033070, intron 3 of 7)	CpG	11727	NM_033070	27440		NM_017829	ENSG00000069998	HDHD5	CECR5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding
15245	chr1	149609871	149610230	+	0	NA	intron (NR_111950, intron 1 of 8)	intron (NR_111950, intron 1 of 8)	3038	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
115810	chr19	16445421	16445680	+	0	NA	intron (NM_021235, intron 1 of 22)	intron (NM_021235, intron 1 of 22)	26420	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
155890	chr22	39525171	39525750	+	0	NA	Intergenic	Intergenic	4896	NM_182810	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
21507	chr1	205750101	205750880	+	0	NA	promoter-TSS (NM_022731)	promoter-TSS (NM_022731)	-308	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
137199	chr2	191155321	191155950	+	0	NA	Intergenic	Intergenic	-4039	NM_001243835	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
207197	chr7	43632621	43633980	+	0	NA	non-coding (NR_146941, exon 9 of 10)	non-coding (NR_146941, exon 9 of 10)	50192	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
44157	chr11	96199201	96200330	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-141673	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
179353	chr4	183256771	183257030	+	0	NA	intron (NM_024949, intron 9 of 22)	(C)n|Simple_repeat|Simple_repeat	-16266	NR_126473	101928734		NR_126473	ENSG00000251128	WWC2-AS1	-	WWC2 antisense RNA 1	ncRNA
154331	chr22	32172421	32172550	+	0	NA	Intergenic	AluY|SINE|Alu	-13182	NM_001010859	150297		NM_001010859	ENSG00000205856	C22orf42	dJ90G24.6	chromosome 22 open reading frame 42	protein-coding
144284	chr20	34680601	34680830	+	0	NA	Intergenic	MIRb|SINE|MIR	-3623	NM_080476	128869		NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1|GPIBD21|NEDBSS|PIG-U	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
167454	chr3	129095301	129095500	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	26404	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
60565	chr13	41502221	41503100	+	0	NA	Intergenic	Intergenic	45110	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
206635	chr7	36115371	36116100	+	0	NA	Intergenic	Intergenic	20425	NR_108089	101928618		NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
142519	chr20	4912551	4912850	+	0	NA	intron (NM_203327, intron 4 of 16)	intron (NM_203327, intron 4 of 16)	88810	NM_005116	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
174573	chr4	40233971	40234450	+	0	NA	intron (NM_001278360, intron 2 of 3)	MamTip3|DNA|hAT-Tip100	37179	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
107947	chr18	58135551	58136100	+	0	NA	intron (NM_001144964, intron 1 of 30)	intron (NM_001144964, intron 1 of 30)	-13495	NM_001144968	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
237949	chrX	132676951	132677700	+	0	NA	intron (NM_001077188, intron 4 of 5)	intron (NM_001077188, intron 4 of 5)	9683	NR_046691	100874102		NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
183963	chr5	88673021	88673500	+	0	NA	promoter-TSS (NR_024384)	promoter-TSS (NR_024384)	79	NR_152242	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
53421	chr12	64782851	64783150	+	0	NA	intron (NM_001330188, intron 1 of 13)	intron (NM_001330188, intron 1 of 13)	2245	NM_001330188	23329		NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
228141	chr9	96851851	96852450	+	0	NA	intron (NM_001346995, intron 1 of 3)	intron (NM_001346995, intron 1 of 3)	2364	NM_001001662	158431		NM_001001662	ENSG00000196597	ZNF782	-	zinc finger protein 782	protein-coding
202142	chr6	155107801	155108200	+	0	NA	intron (NM_001384547, intron 1 of 25)	intron (NM_001384547, intron 1 of 25)	1013	NM_001384547	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
83061	chr16	22339601	22339880	+	0	NA	Intergenic	AluSq2|SINE|Alu	34879	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
2720	chr1	10656301	10656750	+	0	NA	intron (NM_017766, intron 8 of 15)	intron (NM_017766, intron 8 of 15)	140121	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
9447	chr1	50047921	50048180	+	0	NA	promoter-TSS (NM_001144777)	promoter-TSS (NM_001144777)	-5	NM_001144777	1996		NM_021952	ENSG00000162374	ELAVL4	HUD|PNEM	ELAV like RNA binding protein 4	protein-coding
63152	chr13	113608271	113608430	+	0	NA	intron (NR_026580, intron 2 of 10)	intron (NR_026580, intron 2 of 10)	23597	NM_007111	7027		NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
118793	chr19	38405001	38405500	+	0	NA	intron (NM_001351675, intron 4 of 5)	intron (NM_001351675, intron 4 of 5)	2115	NM_001351675	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
158713	chr3	8329871	8330030	+	0	NA	intron (NR_033378, intron 3 of 3)	intron (NR_033378, intron 3 of 3)	171708	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
172277	chr4	1544671	1545780	+	0	NA	Intergenic	Intergenic	138766	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
164146	chr3	56760471	56760630	+	0	NA	intron (NM_001289698, intron 3 of 10)	intron (NM_001289698, intron 3 of 10)	15167	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
153155	chr22	23778271	23778430	+	0	NA	intron (NR_133013, intron 1 of 7).2	intron (NR_133013, intron 1 of 7).2	5501	NR_133013	4320		NM_005940	ENSG00000099953	MMP11	SL-3|ST3|STMY3	matrix metallopeptidase 11	protein-coding
60590	chr13	41962071	41962430	+	0	NA	intron (NR_039974, intron 1 of 3)	intron (NR_039974, intron 1 of 3)	1081	NR_039974	100507240		NR_039974	ENSG00000278338	VWA8-AS1	-	VWA8 antisense RNA 1 (head to head)	ncRNA
169202	chr3	156815951	156816320	+	0	NA	intron (NR_038387, intron 1 of 2)	CpG	927	NR_038387	730091		NR_038387	ENSG00000240875	LINC00886	-	long intergenic non-protein coding RNA 886	ncRNA
202099	chr6	154721471	154721730	+	0	NA	Intergenic	L1MEd|LINE|L1	-11778	NM_001286189	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
151783	chr22	18141171	18141330	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-8920	NM_017414	11274		NM_017414	ENSG00000184979	USP18	ISG43|PTORCH2|UBP43	ubiquitin specific peptidase 18	protein-coding
132097	chr2	101329951	101330050	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	20550	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
78606	chr15	93231571	93231880	+	0	NA	Intergenic	L1MD2|LINE|L1	25659	NM_001365393								
6953	chr1	31757371	31758200	+	0	NA	TTS (NR_036216)	TTS (NR_036216)	950	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
92107	chr17	7578681	7581030	+	0	NA	TTS (NM_001416)	TTS (NM_001416)	217	NM_001251	968		NM_001251	ENSG00000129226	CD68	GP110|LAMP4|SCARD1	CD68 molecule	protein-coding
104481	chr17	81126221	81126850	+	0	NA	promoter-TSS (NR_029897)	promoter-TSS (NR_029897)	-586	NR_029897	442906		NR_029897	ENSG00000283604	MIR338	MIRN338|hsa-mir-338|mir-338	microRNA 338	ncRNA
75623	chr15	67140021	67140330	+	0	NA	intron (NM_001145103, intron 1 of 8)	intron (NM_001145103, intron 1 of 8)	2154	NM_001145103	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
214593	chr7	150665051	150665500	+	0	NA	Intergenic	Intergenic	-20431	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
33697	chr10	120735801	120736000	+	0	NA	Intergenic	Intergenic	115279	NR_033850	283089		NR_033850	ENSG00000227165	WDR11-DT	WDR11-AS1	WDR11 divergent transcript	ncRNA
198549	chr6	106565421	106565680	+	0	NA	intron (NM_001371242, intron 21 of 21)	intron (NM_001371242, intron 21 of 21)	53695	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
141060	chr2	238257721	238257980	+	0	NA	intron (NM_022817, intron 16 of 22)	intron (NM_022817, intron 16 of 22)	-17812	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
220244	chr8	97277551	97278130	+	0	NA	promoter-TSS (NM_033512)	promoter-TSS (NM_033512)	88	NM_033512	85453		NM_033512	ENSG00000180543	TSPYL5	-	TSPY like 5	protein-coding
2786	chr1	10891921	10892180	+	0	NA	Intergenic	L2a|LINE|L2	74637	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
42738	chr11	72701421	72701680	+	0	NA	intron (NR_146780, intron 1 of 1)	intron (NR_146780, intron 1 of 1)	1076	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
193672	chr6	31001001	31001450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4727	NM_001318484	100507679		NM_001198815	ENSG00000261272	MUC22	PBMUCL1	mucin 22	protein-coding
166475	chr3	114253151	114253250	+	0	NA	Intergenic	Intergenic	-15622	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
144509	chr20	35693871	35694230	+	0	NA	intron (NR_037570, intron 4 of 13)	AluJo|SINE|Alu	5302	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
157183	chr22	43036071	43036230	+	0	NA	Intergenic	AluSx|SINE|Alu	-2435	NR_125362	100506679		NR_125362	ENSG00000230319	TTLL1-AS1	-	TTLL1 antisense RNA 1	ncRNA
16701	chr1	155218621	155219130	+	0	NA	non-coding (NR_002188, exon 2 of 13)	non-coding (NR_002188, exon 2 of 13)	8659	NR_002188	2630		NR_002188	ENSG00000291137	GBA1LP	Beta-GC|GBA|GBAP|GBAP1|GC|GLUC	glucosylceramidase beta 1 like, pseudogene	pseudo
149738	chr21	34390771	34391000	+	0	NA	Intergenic	AluJr|SINE|Alu	10187	NM_001282537	101928147		NM_001282537	ENSG00000222018	C21orf140	FAM243A	chromosome 21 open reading frame 140	protein-coding
42569	chr11	71930271	71930630	+	0	NA	intron (NM_001300926, intron 1 of 6)	intron (NM_001300926, intron 1 of 6)	1404	NM_018320	55298		NM_018320	ENSG00000137522	RNF121	-	ring finger protein 121	protein-coding
93578	chr17	19108421	19109480	+	0	NA	Intergenic	Intergenic	3686	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
15032	chr1	148360071	148360430	+	0	NA	Intergenic	AluSx1|SINE|Alu	2283	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
80641	chr16	2993521	2993980	+	0	NA	non-coding (NR_033861, exon 5 of 5)	non-coding (NR_033861, exon 5 of 5)	4696	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
212297	chr7	123872221	123872530	+	0	NA	intron (NM_012269, intron 3 of 4)	intron (NM_012269, intron 3 of 4)	27206	NM_012269	23553		NM_012269	ENSG00000106302	HYAL4	CSHY|HYAL-4	hyaluronidase 4	protein-coding
151061	chr21	44711071	44712280	+	0	NA	promoter-TSS (NM_001272037)	promoter-TSS (NM_001272037)	-103	NM_001272037	54084		NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|ECTD14|STHAG10|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding
230435	chr9	128155551	128155650	+	0	NA	Intergenic	LTR28C|LTR|ERV1	-4665	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
209216	chr7	75485521	75486980	+	0	NA	promoter-TSS (NM_001099415)	promoter-TSS (NM_001099415)	49	NR_160304	100101267		NM_001099415	ENSG00000272391	POM121C	POM121-2	POM121 transmembrane nucleoporin C	protein-coding
121402	chr19	46956871	46957030	+	0	NA	intron (NM_004491, intron 3 of 6)	intron (NM_004491, intron 3 of 6)	-62887	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
138697	chr2	213101651	213102150	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	48537	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
105765	chr18	2785571	2785930	+	0	NA	intron (NM_015295, intron 45 of 47)	L1MB2|LINE|L1	-61256	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
208699	chr7	73282151	73282250	+	0	NA	Intergenic	MIR|SINE|MIR	26626	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
146197	chr20	48772151	48772800	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	55524	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
181231	chr5	39189501	39189930	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	29848	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
53220	chr12	62284471	62284850	+	0	NA	intron (NM_001351164, intron 1 of 21)	intron (NM_001351164, intron 1 of 21)	24256	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
217242	chr8	27204971	27205300	+	0	NA	Intergenic	Intergenic	53269	NM_001283055	81551		NM_030795	ENSG00000015592	STMN4	RB3	stathmin 4	protein-coding
142752	chr20	10454201	10454400	+	0	NA	intron (NM_001009608, intron 1 of 7)	HAL1|LINE|L1	18995	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
29733	chr10	72103901	72104500	+	0	NA	intron (NM_001369102, intron 10 of 11)	intron (NM_001369102, intron 10 of 11)	-15168	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
154885	chr22	37146901	37147580	+	0	NA	intron (NM_001346222, intron 1 of 9)	MIR|SINE|MIR	2676	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
10296	chr1	64850871	64851030	+	0	NA	intron (NM_001321857, intron 11 of 24)	intron (NM_001321857, intron 11 of 24)	105875	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
112094	chr19	5564901	5565250	+	0	NA	intron (NR_027064, intron 1 of 2)	L2b|LINE|L2	2959	NR_027064								
152014	chr22	19423351	19423650	+	0	NA	intron (NM_003325, intron 1 of 24)	(AC)n|Simple_repeat|Simple_repeat	8233	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
147635	chr20	62156501	62157600	+	0	NA	intron (NM_001301778, intron 2 of 11)	intron (NM_001301778, intron 2 of 11)	13281	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
102868	chr17	76507851	76508500	+	0	NA	Intergenic	Intergenic	-6748	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
60462	chr13	41056901	41057600	+	0	NA	intron (NM_001370329, intron 1 of 9)	AluJr|SINE|Alu	4136	NM_001370330	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
79922	chr16	1729971	1730330	+	0	NA	intron (NM_015133, intron 4 of 31)	AluJo|SINE|Alu	-4835	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
187881	chr5	148760901	148761110	+	0	NA	Intergenic	Intergenic	-65606	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
2613	chr1	10074201	10074600	+	0	NA	intron (NM_001105562, intron 2 of 27)	L2a|LINE|L2	41442	NM_006048	10277		NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
79893	chr16	1560601	1561200	+	0	NA	intron (NM_014714, intron 18 of 30)	intron (NM_014714, intron 18 of 30)	-19627	NR_135176	105371046		NR_135176	ENSG00000260989	LOC105371046	-	uncharacterized LOC105371046	ncRNA
100738	chr17	63919071	63919880	+	0	NA	promoter-TSS (NM_022560)	promoter-TSS (NM_022560)	-636	NM_000515	2688		NM_000515	ENSG00000259384	GH1	GH|GH-N|GHB5|GHN|IGHD1A|IGHD1B|IGHD2|hGH-N	growth hormone 1	protein-coding
13527	chr1	114782071	114782230	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	-1465	NR_049741	80143		NM_025073	ENSG00000052723	SIKE1	SIKE	suppressor of IKBKE 1	protein-coding
32672	chr10	103905071	103905880	+	0	NA	intron (NM_024928, intron 3 of 9)	intron (NM_024928, intron 3 of 9)	12709	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
196782	chr6	45633221	45633800	+	0	NA	Intergenic	Intergenic	211235	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
229441	chr9	121393551	121393650	+	0	NA	Intergenic	LTR50|LTR|ERVL	-23296	NM_001270527	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
169028	chr3	152471871	152472830	+	0	NA	Intergenic	L2b|LINE|L2	-131360	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
201797	chr6	149989521	149989880	+	0	NA	Intergenic	LTR19C|LTR|ERV1	15444	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
176378	chr4	88599621	88600530	+	0	NA	intron (NM_001375479, intron 3 of 25)	MIR|SINE|MIR	7595	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
235468	chrX	46587951	46588480	+	0	NA	intron (NM_019886, intron 1 of 1)	intron (NM_019886, intron 1 of 1)	14450	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
184630	chr5	107365271	107366100	+	0	NA	Intergenic	Intergenic	305252	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
131799	chr2	98549001	98549200	+	0	NA	intron (NM_001351424, intron 14 of 25)	intron (NM_001351424, intron 14 of 25)	59412	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
166562	chr3	115680951	115681050	+	0	NA	intron (NM_002045, intron 2 of 2)	intron (NM_002045, intron 2 of 2)	57490	NM_001130064	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
17509	chr1	156744701	156745330	+	0	NA	exon (NM_004494, exon 3 of 6)	exon (NM_004494, exon 3 of 6)	-3927	NM_145729	79590		NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24|uL24m	mitochondrial ribosomal protein L24	protein-coding
122225	chr19	48984871	48985230	+	0	NA	intron (NM_002103, intron 5 of 15)	AluJb|SINE|Alu	8259	NR_027763	2997		NM_002103	ENSG00000104812	GYS1	GSY|GYS	glycogen synthase 1	protein-coding
120047	chr19	41993471	41995180	+	0	NA	promoter-TSS (NM_152296)	promoter-TSS (NM_152296)	-95	NM_152296	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
163718	chr3	52298751	52299400	+	0	NA	Intergenic	Intergenic	-4767	NR_029677	406925		NR_029677	ENSG00000207926	MIR135A1	MIRN135-1|MIRN135A1|mir-135a-1	microRNA 135a-1	ncRNA
95410	chr17	36072001	36072930	+	0	NA	TTS (NM_002988).3	TTS (NM_002988).3	8193	NM_002988	6362		NM_002988	ENSG00000275385	CCL18	AMAC-1|AMAC1|CKb7|DC-CK1|DCCK1|MIP-4|PARC|SCYA18	C-C motif chemokine ligand 18	protein-coding
102896	chr17	76536401	76536750	+	0	NA	intron (NM_134268, intron 1 of 3)	intron (NM_134268, intron 1 of 3)	1134	NM_134268	114757		NM_134268	ENSG00000161544	CYGB	HGB|NOD|STAP	cytoglobin	protein-coding
20370	chr1	197928671	197929130	+	0	NA	intron (NM_001370213, intron 4 of 4)	A-rich|Low_complexity|Low_complexity	11528	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
176651	chr4	99944101	99944830	+	0	NA	intron (NM_001031723, intron 1 of 7)	L1MB2|LINE|L1	2153	NM_001278311	79982		NM_024920	ENSG00000164031	DNAJB14	EGNR9427|PRO34683	DnaJ heat shock protein family (Hsp40) member B14	protein-coding
1211	chr1	2261801	2262100	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	33631	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
96585	chr17	40514451	40514550	+	0	NA	Intergenic	L2c|LINE|L2	-12877	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
227995	chr9	95504171	95504900	+	0	NA	intron (NM_001354919, intron 2 of 4)	intron (NM_001354919, intron 2 of 4)	2664	NM_001083607	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
61787	chr13	75317921	75318630	+	0	NA	intron (NM_001286659, intron 10 of 18)	intron (NM_001286659, intron 10 of 18)	77687	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
132108	chr2	101419051	101419380	+	0	NA	intron (NM_001145664, intron 4 of 11)	intron (NM_001145664, intron 4 of 11)	-31712	NM_153836	200407		NM_153836	ENSG00000175874	CREG2	-	cellular repressor of E1A stimulated genes 2	protein-coding
195903	chr6	41726851	41727550	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	6410	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
83753	chr16	28692501	28692700	+	0	NA	intron (NM_001199142, intron 1 of 20)	AluSc8|SINE|Alu	4042	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
52378	chr12	55714201	55714730	+	0	NA	Intergenic	AluYa5|SINE|Alu	-1569	NM_001487	2647		NM_001487	ENSG00000135441	BLOC1S1	BLOS1|BORCS1|GCN5L1|MICoA|RT14	biogenesis of lysosomal organelles complex 1 subunit 1	protein-coding
124843	chr2	7747971	7748200	+	0	NA	Intergenic	AluSx1|SINE|Alu	151570	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
91357	chr17	4531601	4531800	+	0	NA	intron (NM_001124758, intron 5 of 12)	G-rich|Low_complexity|Low_complexity	23684	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
119817	chr19	41348791	41349400	+	0	NA	intron (NM_000660, intron 1 of 6)	intron (NM_000660, intron 1 of 6)	4827	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
159897	chr3	16898771	16899430	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	14145	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
198988	chr6	110902251	110902550	+	0	NA	Intergenic	Intergenic	27616	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
87298	chr16	70112251	70112600	+	0	NA	Intergenic	AluSx|SINE|Alu	-1201	NM_001322117	55066		NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
19888	chr1	183639671	183640030	+	0	NA	intron (NM_015149, intron 1 of 18)	AluSc5|SINE|Alu	3741	NM_001297670	23179		NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
74741	chr15	63205371	63205980	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	16069	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
70078	chr14	100157271	100157930	+	0	NA	intron (NM_206918, intron 1 of 2)	intron (NM_206918, intron 1 of 2)	2045	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
235496	chrX	47127851	47128150	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	16702	NM_001135998	54539		NM_019056	ENSG00000147123	NDUFB11	CI-ESSS|ESSS|MC1DN30|NP17.3|Np15|P17.3	NADH:ubiquinone oxidoreductase subunit B11	protein-coding
71776	chr15	21323621	21323880	+	0	NA	Intergenic	AluSz|SINE|Alu	-25921	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
176901	chr4	102795471	102795830	+	0	NA	3' UTR (NM_181893, exon 7 of 7)	3' UTR (NM_181893, exon 7 of 7)	18613	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
28339	chr10	46633201	46633600	+	0	NA	intron (NR_027632, intron 2 of 6)	AluJb|SINE|Alu	18576	NR_027632	414241		NM_001098846	ENSG00000165874	SHLD2P1	FAM35B|FAM35BP|FAM35EP|bA38L15.1	shieldin complex subunit 2 pseudogene 1	pseudo
86532	chr16	67168821	67169080	+	0	NA	intron (NM_001374674, intron 10 of 12)	intron (NM_001374674, intron 10 of 12)	-1547	NM_001276309	8996		NM_003946	ENSG00000140939	NOL3	ARC|FCM|MYOCL1|MYP|NOP|NOP30	nucleolar protein 3	protein-coding
109386	chr19	656071	657500	+	0	NA	intron (NM_194460, intron 1 of 8)	intron (NM_194460, intron 1 of 8)	6429	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
120229	chr19	42316301	42317300	+	0	NA	intron (NM_173633, intron 10 of 14)	intron (NM_173633, intron 10 of 14)	3491	NM_173633	284339		NM_173633	ENSG00000167619	TMEM145	-	transmembrane protein 145	protein-coding
19181	chr1	172090221	172090500	+	0	NA	intron (NM_001350204, intron 12 of 20)	intron (NM_001350204, intron 12 of 20)	-48448	NR_036066	100422882		NR_036066	ENSG00000283152	MIR3120	mir-3120	microRNA 3120	ncRNA
195653	chr6	37911721	37911980	+	0	NA	intron (NM_021943, intron 1 of 5)	Tigger13a|DNA|TcMar-Tigger	92123	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
152387	chr22	20525351	20525650	+	0	NA	intron (NM_001293237, intron 1 of 16)	AluSz6|SINE|Alu	17453	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
168274	chr3	141478051	141478350	+	0	NA	Intergenic	LTR81C|LTR|Gypsy	-8827	NM_001303246	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
191918	chr6	15464301	15464600	+	0	NA	intron (NM_001267040, intron 4 of 17)	intron (NM_001267040, intron 4 of 17)	198578	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
116863	chr19	18634671	18635280	+	0	NA	Intergenic	Intergenic	-2053	NM_001345984	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
212122	chr7	116229251	116229550	+	0	NA	intron (NM_152829, intron 1 of 6)	intron (NM_152829, intron 1 of 6)	6447	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
105839	chr18	2993571	2993980	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	18172	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
117927	chr19	33108331	33108450	+	0	NA	intron (NR_135270, intron 10 of 20)	L2a|LINE|L2	-23724	NR_135565	126248		NM_173479	ENSG00000166359	WDR88	PQWD	WD repeat domain 88	protein-coding
235837	chrX	49810121	49810630	+	0	NA	Intergenic	Intergenic	-18885	NM_001318877	9506		NM_007003	ENSG00000101951	PAGE4	CT16.7|GAGE-9|GAGEC1|JM-27|JM27|PAGE-1|PAGE-4	PAGE family member 4	protein-coding
207008	chr7	38358021	38358700	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	16783	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
121174	chr19	46431821	46432100	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-18396	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
146222	chr20	48797501	48797900	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	30299	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
72415	chr15	31438751	31438850	+	0	NA	Intergenic	Intergenic	111965	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
133746	chr2	127485321	127486350	+	0	NA	intron (NM_017969, intron 13 of 13)	intron (NM_017969, intron 13 of 13)	40654	NM_017969	55677		NM_017969	ENSG00000163166	IWS1	-	interacts with SUPT6H, CTD assembly factor 1	protein-coding
52667	chr12	56337701	56337900	+	0	NA	Intergenic	Intergenic	-1084	NM_016584	51561		NM_016584	ENSG00000110944	IL23A	IL-23|IL-23A|IL23P19|P19|SGRF	interleukin 23 subunit alpha	protein-coding
1682	chr1	4173351	4173450	+	0	NA	Intergenic	Intergenic	-224420	NR_147024	105376672		NR_147024	ENSG00000226374	LINC01345	-	long intergenic non-protein coding RNA 1345	ncRNA
46451	chr11	128157551	128158150	+	0	NA	Intergenic	Intergenic	-50916	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
74978	chr15	63870071	63870750	+	0	NA	TTS (NR_029944)	TTS (NR_029944)	609	NR_029944	494334		NR_029944	ENSG00000199156	MIR422A	MIRN422A	microRNA 422a	ncRNA
159436	chr3	13653321	13653580	+	0	NA	intron (NR_027103, intron 1 of 5)	intron (NR_027103, intron 1 of 5)	2729	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
140386	chr2	233067201	233067780	+	0	NA	intron (NM_001017915, intron 1 of 26).2	L1MB7|LINE|L1	7148	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
126755	chr2	30238421	30238700	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	7026	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
155642	chr22	38963651	38964150	+	0	NA	promoter-TSS (NR_104187)	promoter-TSS (NR_104187)	-490	NR_104187	100874530		NR_104187	ENSG00000249310	APOBEC3B-AS1	-	APOBEC3B antisense RNA 1	ncRNA
195754	chr6	40369701	40370270	+	0	NA	Intergenic	L1MA9|LINE|L1	-8352	NR_160960	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
188207	chr5	150698201	150699080	+	0	NA	intron (NM_018047, intron 3 of 10)	intron (NM_018047, intron 3 of 10)	2422	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
36380	chr11	3983051	3983800	+	0	NA	intron (NM_001382568, intron 2 of 11)	intron (NM_001382568, intron 2 of 11)	-111260	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
58269	chr12	128829701	128830180	+	0	NA	Intergenic	Intergenic	-5982	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
232439	chr9	136112471	136112650	+	0	NA	Intergenic	Intergenic	-5232	NR_165242	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
102437	chr17	75677101	75677950	+	0	NA	intron (NR_126036, intron 3 of 9)	AluSz|SINE|Alu	10187	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
127145	chr2	37683701	37684300	+	0	NA	Intergenic	Intergenic	-11051	NM_001371569	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
90729	chr17	2017951	2018250	+	0	NA	non-coding (NR_135642, exon 1 of 2)	non-coding (NR_135642, exon 1 of 2)	384	NR_135642	105371485		NR_135642	ENSG00000228133	LOC105371485	-	uncharacterized LOC105371485	ncRNA
173522	chr4	9704371	9704530	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-77184	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
32225	chr10	101817631	101819530	+	0	NA	promoter-TSS (NR_045118)	promoter-TSS (NR_045118)	-115	NM_001142434	10724		NM_012215	ENSG00000198408	OGA	MEA5|MGEA5|NCOAT	O-GlcNAcase	protein-coding
6796	chr1	30823121	30823530	+	0	NA	Intergenic	L2a|LINE|L2	-1327	NR_146732	105378622		NR_146732	ENSG00000223382	LINC01778	-	long intergenic non-protein coding RNA 1778	ncRNA
115660	chr19	16134321	16134780	+	0	NA	TTS (NM_005370)	TTS (NM_005370)	522	NR_111903	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
46110	chr11	122879401	122879600	+	0	NA	Intergenic	Intergenic	-3028	NM_199124	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
221126	chr8	118116171	118116530	+	0	NA	Intergenic	L2a|LINE|L2	-4524	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
235331	chrX	43750221	43750650	+	0	NA	Intergenic	Intergenic	94136	NM_000240	4128		NM_000240	ENSG00000189221	MAOA	BRNRS|MAO-A	monoamine oxidase A	protein-coding
23035	chr1	226444721	226445580	+	0	NA	Intergenic	LTR49|LTR|ERV1	-37057	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
234890	chrX	30659471	30659630	+	0	NA	intron (NM_001205019, intron 1 of 20)	intron (NM_001205019, intron 1 of 20)	6127	NM_000167	2710		NM_000167	ENSG00000198814	GK	GK1|GKD	glycerol kinase	protein-coding
215166	chr7	155653621	155653980	+	0	NA	intron (NM_053043, intron 1 of 17)	MER21C|LTR|ERVL	9139	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
121620	chr19	47429251	47429450	+	0	NA	3' UTR (NM_015063, exon 10 of 10)	3' UTR (NM_015063, exon 10 of 10)	-7117	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
104608	chr17	81415771	81416350	+	0	NA	intron (NM_001377448, intron 2 of 27)	(TGTG)n|Simple_repeat|Simple_repeat	-15282	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
17421	chr1	156653801	156654200	+	0	NA	TTS (NM_198427)	TTS (NM_198427)	11883	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
4785	chr1	23557721	23558700	+	0	NA	3' UTR (NM_002167, exon 3 of 3)	3' UTR (NM_002167, exon 3 of 3)	1291	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
182183	chr5	56736051	56736530	+	0	NA	Intergenic	Intergenic	36581	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
235004	chrX	39857721	39858130	+	0	NA	Intergenic	Intergenic	20364	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
72632	chr15	38452771	38453280	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-1102	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
101088	chr17	64928621	64928980	+	0	NA	Intergenic	Intergenic	-9309	NM_001303255	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
180700	chr5	21493901	21494330	+	0	NA	intron (NR_027028, intron 4 of 5).2	AluSg|SINE|Alu	34635	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
22559	chr1	222617271	222619200	+	0	NA	exon (NM_001324063, exon 1 of 26)	exon (NM_001324063, exon 1 of 26)	133	NM_001324064	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
115589	chr19	16001651	16002350	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-13634	NR_026828	126536		NM_001034966	ENSG00000205396	LINC00661	-	long intergenic non-protein coding RNA 661	ncRNA
197271	chr6	70672801	70673230	+	0	NA	intron (NM_001281440, intron 1 of 10)	intron (NM_001281440, intron 1 of 10)	4485	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
66900	chr14	65224771	65225150	+	0	NA	Intergenic	LTR50|LTR|ERVL	-2613	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
123194	chr19	52569571	52570930	+	0	NA	promoter-TSS (NM_018260)	promoter-TSS (NM_018260)	-37	NM_018260	55762		NM_018260	ENSG00000167562	ZNF701	-	zinc finger protein 701	protein-coding
108018	chr18	58761051	58761750	+	0	NA	Intergenic	Intergenic	-52480	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
100390	chr17	60150671	60150830	+	0	NA	intron (NR_137422, intron 1 of 11)	CpG	777	NM_000717	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
104958	chr17	81962501	81963050	+	0	NA	Intergenic	CpG	-1588	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
158864	chr3	9845951	9846050	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1941	NM_001351737	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
10485	chr1	66366701	66367050	+	0	NA	intron (NM_001037340, intron 11 of 14)	intron (NM_001037340, intron 11 of 14)	12340	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
481	chr1	1163021	1163300	+	0	NA	Intergenic	CpG	-3944	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
208970	chr7	74197451	74198200	+	0	NA	TTS (NM_031992)	TTS (NM_031992)	6627	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
119311	chr19	39858671	39858830	+	0	NA	Intergenic	MER51A|LTR|ERV1	-12371	NM_001436	2091		NM_001436	ENSG00000105202	FBL	FIB|FLRN|Nop1|RNU3IP1	fibrillarin	protein-coding
83273	chr16	24011371	24011530	+	0	NA	intron (NM_212535, intron 3 of 16)	MIR|SINE|MIR	175467	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
159391	chr3	13420701	13422130	+	0	NA	Intergenic	Intergenic	-1093	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
95858	chr17	38841001	38841780	+	0	NA	promoter-TSS (NM_001080465)	promoter-TSS (NM_001080465)	48	NM_001080465	388381		NM_001080465	ENSG00000275489	SPMAP1	C17orf98	sperm microtubule associated protein 1	protein-coding
7018	chr1	31915271	31915980	+	0	NA	intron (NM_001369858, intron 2 of 4)	AluJb|SINE|Alu	22193	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
223944	chr9	972651	972950	+	0	NA	Intergenic	CpG	-3855	NM_021240	58524		NM_021240	ENSG00000064218	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
85680	chr16	56401651	56401750	+	0	NA	intron (NM_001144, intron 8 of 13)	intron (NM_001144, intron 8 of 13)	23289	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
142880	chr20	17856071	17856430	+	0	NA	Intergenic	Intergenic	106696	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
28137	chr10	43439271	43440130	+	0	NA	intron (NM_001355444, intron 1 of 3)	AluSx1|SINE|Alu	2589	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
63724	chr14	21208251	21208750	+	0	NA	TTS (NM_031314)	TTS (NM_031314)	-1600	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
124221	chr19	57278051	57278700	+	0	NA	intron (NR_136528, intron 1 of 3)	MER41A|LTR|ERV1	-1592	NM_001330622	10794		NM_006635	ENSG00000197714	ZNF460	HZF8|ZNF272	zinc finger protein 460	protein-coding
5071	chr1	24673601	24674200	+	0	NA	TTS (NM_001366600)	TTS (NM_001366600)	30321	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
67526	chr14	71000421	71000830	+	0	NA	intron (NM_014982, intron 8 of 35)	AluSx|SINE|Alu	93166	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
91159	chr17	3771101	3771930	+	0	NA	intron (NM_002208, intron 2 of 30)	L1ME3A|LINE|L1	29673	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
95151	chr17	35081951	35083400	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	6551	NR_037713	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
152881	chr22	22616321	22617030	+	0	NA	Intergenic	Intergenic	27866	NR_024591	25812		NM_014348		POM121L1P	POM121L1	POM121 transmembrane nucleoporin like 1, pseudogene	pseudo
83086	chr16	22436721	22437980	+	0	NA	non-coding (NR_027154, exon 1 of 29)	non-coding (NR_027154, exon 1 of 29)	342	NR_027154	641298		NM_199284	ENSG00000237296	SMG1P1	-	SMG1 pseudogene 1	pseudo
42820	chr11	72827771	72829000	+	0	NA	exon (NM_001318766, exon 15 of 18)	exon (NM_001318766, exon 15 of 18)	13974	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
196850	chr6	47482321	47482580	+	0	NA	intron (NM_012120, intron 1 of 17)	AluSc8|SINE|Alu	4661	NM_012120	23607		NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
149390	chr21	31117971	31118130	+	0	NA	TTS (NM_001353691)	TTS (NM_001353691)	42890	NM_001353684	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
198576	chr6	107458621	107460140	+	0	NA	5' UTR (NM_020381, exon 1 of 8)	5' UTR (NM_020381, exon 1 of 8)	184	NM_020381	57107		NM_020381	ENSG00000164494	PDSS2	C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1	decaprenyl diphosphate synthase subunit 2	protein-coding
213641	chr7	139682951	139683050	+	0	NA	intron (NM_022740, intron 2 of 14)	intron (NM_022740, intron 2 of 14)	94998	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
135207	chr2	159094221	159094480	+	0	NA	intron (NM_001350064, intron 3 of 26)	intron (NM_001350064, intron 3 of 26)	-92485	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
205209	chr7	7817801	7818150	+	0	NA	intron (NM_001302350, intron 4 of 4)	AluJb|SINE|Alu	-99368	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
187014	chr5	139758651	139758950	+	0	NA	Intergenic	Intergenic	-12577	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
71256	chr14	105201451	105202330	+	0	NA	Intergenic	Intergenic	-20567	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
187387	chr5	141877951	141878690	+	0	NA	promoter-TSS (NM_002587)	promoter-TSS (NM_002587)	90	NM_032420	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
219000	chr8	63172101	63172300	+	0	NA	intron (NM_001277816, intron 2 of 3)	intron (NM_001277816, intron 2 of 3)	3197	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
109501	chr19	828501	828700	+	0	NA	intron (NM_001700, intron 2 of 4)	intron (NM_001700, intron 2 of 4)	763	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
172844	chr4	3244321	3244780	+	0	NA	TTS (NM_002111)	TTS (NM_002111)	181	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
27438	chr10	31759051	31760930	+	0	NA	Intergenic	CpG	148936	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
98171	chr17	46085301	46085700	+	0	NA	intron (NM_015443, intron 3 of 14).2	AluJb|SINE|Alu	86250	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
6961	chr1	31767551	31767950	+	0	NA	Intergenic	Intergenic	-3410	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
206719	chr7	36535751	36536050	+	0	NA	intron (NM_001177506, intron 16 of 21)	intron (NM_001177506, intron 16 of 21)	64220	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
237872	chrX	130415151	130415500	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	13338	NM_016024	51634		NM_016024	ENSG00000134597	RBMX2	CGI-79|Snu17	RNA binding motif protein X-linked 2	protein-coding
136717	chr2	181171051	181171430	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	47403	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
178626	chr4	152112971	152113330	+	0	NA	Intergenic	Intergenic	12332	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
139664	chr2	226841171	226841330	+	0	NA	intron (NM_001167608, intron 3 of 8)	AluJb|SINE|Alu	5196	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
203777	chr7	1233351	1233450	+	0	NA	intron (NM_001080461, intron 1 of 2)	CpG-25321	528	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
133779	chr2	127695651	127695980	+	0	NA	Intergenic	CpG	-5682	NM_032740	84826		NM_032740	ENSG00000173349	SFT2D3	-	SFT2 domain containing 3	protein-coding
147552	chr20	60008651	60008770	+	0	NA	intron (NM_177980, intron 17 of 17)	intron (NM_177980, intron 17 of 17)	12336	NM_021810	60437		NM_021810	ENSG00000124215	CDH26	VR20	cadherin 26	protein-coding
34938	chr11	441321	443080	+	0	NA	promoter-TSS (NM_001012302)	promoter-TSS (NM_001012302)	-189	NM_001012302	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
35043	chr11	584071	584230	+	0	NA	intron (NM_001286582, intron 3 of 17)	intron (NM_001286582, intron 3 of 17)	7680	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
98878	chr17	48548121	48548900	+	0	NA	TTS (NM_001384747)	TTS (NM_001384747)	-3479	NM_002145	3212		NM_002145	ENSG00000173917	HOXB2	HOX2|HOX2H|Hox-2.8|K8	homeobox B2	protein-coding
37363	chr11	15208421	15208900	+	0	NA	intron (NM_001031853, intron 7 of 12)	intron (NM_001031853, intron 7 of 12)	59558	NM_001278315	387755		NM_001031853	ENSG00000188487	INSC	-	INSC spindle orientation adaptor protein	protein-coding
210484	chr7	100161751	100162100	+	0	NA	intron (NM_024637, intron 3 of 3)	L1PA8|LINE|L1	-3202	NM_018275	55262		NM_018275	ENSG00000146826	TRAPPC14	C7orf43|MAP11|MCPH25	trafficking protein particle complex subunit 14	protein-coding
207464	chr7	44611021	44611700	+	0	NA	intron (NM_001363523, intron 1 of 23)	AluY|SINE|Alu	4733	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
62681	chr13	102632021	102632430	+	0	NA	intron (NR_160411, intron 10 of 28)	intron (NR_160411, intron 10 of 28)	35239	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
223022	chr8	143307551	143307850	+	0	NA	Intergenic	CpG	16283	NM_030895	79943		NM_030895	ENSG00000185730	ZNF696	-	zinc finger protein 696	protein-coding
50543	chr12	47949201	47950000	+	0	NA	Intergenic	Intergenic	-13947	NM_024056	79022		NM_024056	ENSG00000134291	TMEM106C	-	transmembrane protein 106C	protein-coding
115948	chr19	16719251	16720200	+	0	NA	promoter-TSS (NM_001007525)	promoter-TSS (NM_001007525)	-122	NM_001290355	284434		NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
44217	chr11	96318001	96318850	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-23013	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
185697	chr5	131999171	131999330	+	0	NA	intron (NM_001205250, intron 1 of 20)	MIRb|SINE|MIR	12408	NM_001205247	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
34289	chr10	131928021	131929230	+	0	NA	intron (NM_001291310, intron 3 of 9)	L2|LINE|L2	27617	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
11584	chr1	91552471	91552830	+	0	NA	Intergenic	Intergenic	51542	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
80010	chr16	1919951	1920350	+	0	NA	Intergenic	Intergenic	-1735	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
229712	chr9	124839621	124840400	+	0	NA	Intergenic	Intergenic	-13407	NM_001276374	401551		NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
189842	chr5	177099301	177099600	+	0	NA	Intergenic	AluSx|SINE|Alu	9900	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
141119	chr2	238881551	238882450	+	0	NA	intron (NM_001271893, intron 1 of 1)	intron (NM_001271893, intron 1 of 1)	33915	NM_001271893	117581		NM_057179	ENSG00000233608	TWIST2	AMS|BBRSAY|DERMO1|FFDD3|SETLSS|bHLHa39	twist family bHLH transcription factor 2	protein-coding
55769	chr12	108568301	108569350	+	0	NA	3' UTR (NM_001320042, exon 5 of 5)	3' UTR (NM_001320042, exon 5 of 5)	6229	NM_213595	23479		NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
51761	chr12	53296801	53297000	+	0	NA	intron (NM_002624, intron 3 of 5)	intron (NM_002624, intron 3 of 5)	1358	NM_002624	5204		NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
215198	chr7	155796821	155797480	+	0	NA	Intergenic	CpG	12013	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
139763	chr2	230000371	230000880	+	0	NA	intron (NM_174899, intron 3 of 3)	intron (NM_174899, intron 3 of 3)	68299	NM_152527	151473		NM_152527	ENSG00000163053	SLC16A14	MCT14	solute carrier family 16 member 14	protein-coding
136560	chr2	177554251	177554550	+	0	NA	Intergenic	MamRep1879|DNA|hAT-Tip100?	-1604	NM_152517	150737		NM_152517	ENSG00000196659	IFT70B	IFT70|TTC30B|fleer	intraflagellar transport 70B	protein-coding
26800	chr10	23366371	23366730	+	0	NA	Intergenic	AluJr|SINE|Alu	-21753	NM_153714	256815		NM_153714	ENSG00000179133	C10orf67	C10orf115|LINC01552	chromosome 10 open reading frame 67	protein-coding
140501	chr2	233201101	233201680	+	0	NA	intron (NM_001017915, intron 25 of 26).2	intron (NM_001017915, intron 25 of 26).2	-50181	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
63212	chr13	113837601	113837800	+	0	NA	intron (NM_000820, intron 6 of 14)	intron (NM_000820, intron 6 of 14)	22090	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
219281	chr8	67585421	67585500	+	0	NA	intron (NM_020361, intron 2 of 10)	intron (NM_020361, intron 2 of 10)	160900	NM_020361	57094		NM_020361	ENSG00000165078	CPA6	CPAH|ETL5|FEB11	carboxypeptidase A6	protein-coding
201542	chr6	149190301	149190500	+	0	NA	Intergenic	L1PB1|LINE|L1	-27524	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
30038	chr10	73804121	73804730	+	0	NA	intron (NR_160744, intron 9 of 14)	AluSz|SINE|Alu	-3026	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
89055	chr16	88444321	88444830	+	0	NA	Intergenic	Intergenic	-8705	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
31736	chr10	97738621	97739050	+	0	NA	intron (NM_001174122, intron 2 of 8)	intron (NM_001174122, intron 2 of 8)	358	NM_001002261	118813		NM_144588	ENSG00000155256	ZFYVE27	PROTRUDIN|SPG33	zinc finger FYVE-type containing 27	protein-coding
161326	chr3	39418701	39419180	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	7886	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
70103	chr14	100223521	100224930	+	0	NA	Intergenic	MIR3|SINE|MIR	-14919	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
48004	chr12	6924001	6925250	+	0	NA	TTS (NM_001975)	TTS (NM_001975)	166	NM_001007026	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
191692	chr6	13613171	13613650	+	0	NA	non-coding (NR_164853, exon 7 of 7)	non-coding (NR_164853, exon 7 of 7)	-1917	NM_001317724	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
26461	chr10	17511301	17512230	+	0	NA	Intergenic	AluJo|SINE|Alu	-57170	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
136689	chr2	181123681	181125000	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	503	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
18827	chr1	167669471	167669630	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	39318	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
206687	chr7	36501001	36501400	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	98920	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
199151	chr6	111729171	111729600	+	0	NA	intron (NM_002037, intron 3 of 13)	AluSx1|SINE|Alu	29746	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
148189	chr20	63548451	63548700	+	0	NA	Intergenic	Intergenic	-1071	NM_080823	6725		NM_080823	ENSG00000125508	SRMS	C20orf148|PTK70|SRM|dJ697K14.1	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding
150500	chr21	42830671	42831300	+	0	NA	Intergenic	MIRb|SINE|MIR	48290	NM_001260477	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
112406	chr19	6181951	6182050	+	0	NA	intron (NM_030924, intron 8 of 14)	MER81|DNA|hAT-Blackjack	46333	NM_001289179	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
55538	chr12	105334401	105334800	+	0	NA	intron (NM_001145199, intron 1 of 5)	intron (NM_001145199, intron 1 of 5)	3909	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
49540	chr12	26274701	26274930	+	0	NA	Intergenic	Intergenic	79242	NM_005086	8082		NM_005086	ENSG00000123096	SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
123929	chr19	55368801	55369480	+	0	NA	intron (NM_000641, intron 1 of 4)	MSR1|Satellite|Satellite	1323	NM_001267718	3589		NM_000641	ENSG00000095752	IL11	AGIF|IL-11	interleukin 11	protein-coding
227482	chr9	91161571	91161900	+	0	NA	intron (NR_135306, intron 2 of 2)	intron (NR_135306, intron 2 of 2)	42673	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
97593	chr17	44110721	44111880	+	0	NA	intron (NM_001015053, intron 2 of 26)	intron (NM_001015053, intron 2 of 26)	-4612	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
84910	chr16	31220301	31220830	+	0	NA	intron (NM_001008274, intron 4 of 6)	AluSz6|SINE|Alu	-3430	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
238140	chrX	136726821	136727230	+	0	NA	intron (NM_004840, intron 6 of 21)	L2c|LINE|L2	40790	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
19687	chr1	181022501	181024350	+	0	NA	promoter-TSS (NM_005819)	promoter-TSS (NM_005819)	-304	NM_001286210	10228		NM_005819	ENSG00000135823	STX6	-	syntaxin 6	protein-coding
163273	chr3	50305351	50305450	+	0	NA	intron (NM_153281, intron 2 of 5)	AluY|SINE|Alu	-1826	NM_153282	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
196978	chr6	53165801	53166030	+	0	NA	Intergenic	L1PA17|LINE|L1	-17074	NM_003643	8521		NM_003643	ENSG00000137270	GCM1	GCMA|hGCMa	glial cells missing transcription factor 1	protein-coding
51296	chr12	51244651	51245100	+	0	NA	TTS (NM_001136268)	TTS (NM_001136268)	6049	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
138646	chr2	210577521	210577780	+	0	NA	intron (NR_161225, intron 5 of 38)	intron (NR_161225, intron 5 of 38)	-15705	NR_163592	1373		NM_001875	ENSG00000021826	CPS1	CPSASE1|GATD6|PHN	carbamoyl-phosphate synthase 1	protein-coding
146146	chr20	48687471	48687830	+	0	NA	intron (NM_020820, intron 10 of 39)	intron (NM_020820, intron 10 of 39)	140349	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
114459	chr19	12723671	12724800	+	0	NA	promoter-TSS (NM_001382241)	promoter-TSS (NM_001382241)	-303	NM_001382241	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
25916	chr10	11310951	11311280	+	0	NA	intron (NM_001326330, intron 9 of 12)	L1MEd|LINE|L1	33559	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
132824	chr2	110572771	110573230	+	0	NA	intron (NM_001384363, intron 1 of 22).2	intron (NM_001384363, intron 1 of 22).2	3900	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
37001	chr11	11966751	11967400	+	0	NA	exon (NM_013253, exon 6 of 8)	exon (NM_013253, exon 6 of 8)	41564	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
147756	chr20	62419971	62420350	+	0	NA	intron (NM_080833, intron 1 of 13)	intron (NM_080833, intron 1 of 13)	7379	NM_080833	140893		NM_080833	ENSG00000130701	RBBP8NL	C20orf151	RBBP8 N-terminal like	protein-coding
212246	chr7	121393621	121393880	+	0	NA	intron (NM_001040020, intron 1 of 9)	intron (NM_001040020, intron 1 of 9)	2558	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
200544	chr6	136261221	136261480	+	0	NA	exon (NM_001077440, exon 11 of 12)	exon (NM_001077440, exon 11 of 12)	-11039	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
81380	chr16	5056171	5056600	+	0	NA	intron (NM_152459, intron 4 of 7)	MIR|SINE|MIR	9571	NM_001098514	146556		NM_152459	ENSG00000153446	C16orf89	-	chromosome 16 open reading frame 89	protein-coding
46047	chr11	122696371	122697170	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	41048	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
23258	chr1	227871901	227872250	+	0	NA	Intergenic	L1PA7|LINE|L1	56358	NM_183062	339501		NM_183062	ENSG00000185888	PRSS38	MPN2	serine protease 38	protein-coding
175009	chr4	52037901	52039100	+	0	NA	promoter-TSS (NM_000232)	promoter-TSS (NM_000232)	-201	NM_000232	6443		NM_000232	ENSG00000163069	SGCB	A3b|LGMD2E|LGMDR4|SGC	sarcoglycan beta	protein-coding
184937	chr5	112987401	112987600	+	0	NA	intron (NM_152624, intron 2 of 10)	AluSz6|SINE|Alu	10702	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
27793	chr10	35495721	35495980	+	0	NA	intron (NM_145012, intron 2 of 9)	intron (NM_145012, intron 2 of 9)	-109491	NM_153368	219770		NM_153368	ENSG00000177291	GJD4	CX40.1	gap junction protein delta 4	protein-coding
190694	chr6	188701	189500	+	0	NA	intron (NR_126020, intron 3 of 7)	intron (NR_126020, intron 3 of 7)	16384	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
166284	chr3	112497401	112497600	+	0	NA	intron (NM_001085357, intron 1 of 3)	intron (NM_001085357, intron 1 of 3)	1972	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
229831	chr9	125759851	125759950	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	11717	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
77833	chr15	88642321	88643150	+	0	NA	intron (NM_001303237, intron 2 of 3)	AluSz|SINE|Alu	3719	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
9667	chr1	52695871	52696230	+	0	NA	intron (NM_023077, intron 1 of 2)	intron (NM_023077, intron 1 of 2)	2297	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
205424	chr7	16654321	16654780	+	0	NA	intron (NM_001159767, intron 1 of 11)	AluSx|SINE|Alu	-6664	NM_001362717	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
229516	chr9	122464721	122465220	+	0	NA	Intergenic	Intergenic	12956	NM_001004451	347168		NM_001004451	ENSG00000136834	OR1J1	OR9-18|hg32	olfactory receptor family 1 subfamily J member 1	protein-coding
13170	chr1	112337101	112337400	+	0	NA	Intergenic	Intergenic	-58964	NM_018704	55917		NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
218412	chr8	47573451	47573830	+	0	NA	intron (NM_001352958, intron 10 of 21)	intron (NM_001352958, intron 10 of 21)	-80448	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
120096	chr19	42131021	42131280	+	0	NA	intron (NM_001247994, intron 1 of 13)	L2c|LINE|L2	1296	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
104870	chr17	81858101	81858730	+	0	NA	intron (NM_000918, intron 2 of 10)	intron (NM_000918, intron 2 of 10)	2120	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
31532	chr10	96856301	96856500	+	0	NA	intron (NM_032440, intron 2 of 7)	(TCCT)n|Simple_repeat|Simple_repeat	23455	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
208858	chr7	73716601	73716800	+	0	NA	intron (NM_001165903, intron 1 of 9)	intron (NM_001165903, intron 1 of 9)	2969	NM_004603	6804		NM_004603	ENSG00000106089	STX1A	HPC-1|P35-1|STX1|SYN1A	syntaxin 1A	protein-coding
67214	chr14	68941021	68941280	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	38152	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
104345	chr17	80979101	80979630	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-8152	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
20895	chr1	202153921	202154280	+	0	NA	intron (NR_037663, intron 6 of 9)	intron (NR_037663, intron 6 of 9)	5354	NM_001364878	5778		NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase non-receptor type 7	protein-coding
32136	chr10	101248801	101249200	+	0	NA	Intergenic	Intergenic	14550	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
20401	chr1	198181071	198181630	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	24352	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
70735	chr14	103359471	103359830	+	0	NA	Intergenic	AluY|SINE|Alu	21801	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
169269	chr3	157606601	157606880	+	0	NA	Intergenic	Intergenic	63428	NR_166164	152078		NM_001099777	ENSG00000293490	SLC66A1LP	C3orf55|PQLC2L|SLC66A1L|SLC66A2L	solute carrier family 66 member 1 like, pseudogene	pseudo
52161	chr12	54286701	54287030	+	0	NA	3' UTR (NM_002136, exon 10 of 10)	3' UTR (NM_002136, exon 10 of 10)	6139	NR_135167	3178		NM_002136	ENSG00000135486	HNRNPA1	ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|MPD3|UP 1|hnRNP A1|hnRNP-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding
201746	chr6	149926021	149926830	+	0	NA	Intergenic	L1M4|LINE|L1	-3304	NR_130110	353091		NM_001001788	ENSG00000203722	RAET1G	ULBP5	retinoic acid early transcript 1G	protein-coding
95912	chr17	38906271	38907030	+	0	NA	intron (NM_006148, intron 4 of 6)	intron (NM_006148, intron 4 of 6)	-8329	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
126114	chr2	26018171	26018330	+	0	NA	Intergenic	Intergenic	-15834	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
97469	chr17	43762371	43762900	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-3844	NM_025237	50964		NM_025237	ENSG00000167941	SOST	CDD|DAND6|SOST1|VBCH	sclerostin	protein-coding
211482	chr7	105124251	105124550	+	0	NA	intron (NM_001350746, intron 14 of 14)	AluSq|SINE|Alu	110195	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
7976	chr1	37861151	37861450	+	0	NA	non-coding (NR_158628, exon 25 of 25)	non-coding (NR_158628, exon 25 of 25)	-1708	NM_005955	4520		NM_005955	ENSG00000188786	MTF1	MTF-1|ZRF	metal regulatory transcription factor 1	protein-coding
20860	chr1	201972471	201973100	+	0	NA	Intergenic	Intergenic	-5676	NR_145769	109616993		NR_145769	ENSG00000206637	SNORA70H	-	small nucleolar RNA, H/ACA box 70H	snoRNA
166330	chr3	112856301	112857000	+	0	NA	Intergenic	HERVL74-int|LTR|ERVL	-9794	NM_001370552	344807		NM_001008784	ENSG00000206531	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1 like	protein-coding
195115	chr6	35649001	35649200	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluY|SINE|Alu	15689	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
190793	chr6	787071	787230	+	0	NA	Intergenic	Intergenic	-81348	NR_110853	101927691		NR_110853		LOC101927691	-	uncharacterized LOC101927691	ncRNA
14459	chr1	144420371	144420830	+	0	NA	TTS (NM_001170755)	TTS (NM_001170755)	8024	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
230845	chr9	129102821	129103900	+	0	NA	intron (NM_001346547, intron 3 of 13)	intron (NM_001346547, intron 3 of 13)	7433	NM_001346547	1384		NM_000755	ENSG00000095321	CRAT	CAT|CAT1|NBIA8	carnitine O-acetyltransferase	protein-coding
138990	chr2	218301331	218302230	+	0	NA	intron (NM_015488, intron 2 of 9)	AluJr|SINE|Alu	-9203	NM_001321438	64114		NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
52868	chr12	57173001	57173600	+	0	NA	exon (NM_002332, exon 21 of 89)	exon (NM_002332, exon 21 of 89)	-21204	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
230370	chr9	128074701	128075100	+	0	NA	intron (NM_001006641, intron 1 of 9)	AluSz|SINE|Alu	6700	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
76163	chr15	72796621	72797430	+	0	NA	intron (NR_040107, intron 2 of 2)	CpG	-13267	NM_001365225	83440		NM_031284	ENSG00000159322	ADPGK	2610017G09Rik|ADP-GK	ADP dependent glucokinase	protein-coding
102525	chr17	75816671	75816830	+	0	NA	intron (NM_001080419, intron 7 of 15)	intron (NM_001080419, intron 7 of 15)	27654	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
120068	chr19	42077671	42078530	+	0	NA	intron (NM_022752, intron 1 of 1)	intron (NM_022752, intron 1 of 1)	1934	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
79420	chr16	691851	692300	+	0	NA	TTS (NM_153350)	TTS (NM_153350)	-1677	NM_032259	84219		NM_032259	ENSG00000127580	WDR24	C16orf21|JFP7	WD repeat domain 24	protein-coding
60960	chr13	46582351	46582650	+	0	NA	intron (NM_015116, intron 1 of 18)	AluJb|SINE|Alu	29330	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
235447	chrX	46408801	46409080	+	0	NA	Intergenic	Intergenic	-38249	NM_001129899	55634		NM_017776	ENSG00000147121	KRBOX4	ZNF673	KRAB box domain containing 4	protein-coding
161415	chr3	41244301	41244500	+	0	NA	Intergenic	Intergenic	44895	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
168618	chr3	149581201	149581850	+	0	NA	intron (NM_001348362, intron 5 of 9)	intron (NM_001348362, intron 5 of 9)	76500	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
105449	chr17	82978671	82979230	+	0	NA	intron (NR_135465, intron 6 of 13)	L1MEc|LINE|L1	28038	NR_135466	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
39210	chr11	57528421	57529080	+	0	NA	exon (NM_012456, exon 3 of 3)	exon (NM_012456, exon 3 of 3)	2004	NM_012456	26519		NM_012456	ENSG00000134809	TIMM10	TIM10|TIM10A|TIMM10A	translocase of inner mitochondrial membrane 10	protein-coding
217126	chr8	25243501	25243900	+	0	NA	exon (NM_001322810, exon 2 of 4)	exon (NM_001322810, exon 2 of 4)	59011	NM_024940	80005		NM_024940	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
18446	chr1	161529871	161531780	+	0	NA	Intergenic	CpG	6285	NM_002155	3310		NM_002155	ENSG00000173110	HSPA6	HSP70B'	heat shock protein family A (Hsp70) member 6	protein-coding
188250	chr5	151068521	151069480	+	0	NA	intron (NM_001252390, intron 1 of 17)	intron (NM_001252390, intron 1 of 17)	-3869	NM_001258456	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
80147	chr16	2089421	2089730	+	0	NA	TTS (NM_021055)	TTS (NM_021055)	709	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
33898	chr10	124494201	124494400	+	0	NA	intron (NM_001318331, intron 3 of 3)	intron (NM_001318331, intron 3 of 3)	32477	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
117620	chr19	23270771	23271330	+	0	NA	intron (NR_103741, intron 1 of 4)	AluSx|SINE|Alu	3201	NR_103742	100132815		NR_103741		IPO5P1	-	importin 5 pseudogene 1	pseudo
74824	chr15	63486901	63487930	+	0	NA	Intergenic	Intergenic	-17096	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
165252	chr3	73056101	73056560	+	0	NA	intron (NM_174907, intron 3 of 8)	intron (NM_174907, intron 3 of 8)	-5329	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
40418	chr11	64164571	64165050	+	0	NA	intron (NM_014067, intron 1 of 10)	intron (NM_014067, intron 1 of 10)	1303	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
159846	chr3	16511721	16513000	+	0	NA	intron (NM_015150, intron 1 of 9)	intron (NM_015150, intron 1 of 9)	1339	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
60995	chr13	46893951	46894450	+	0	NA	intron (NM_001165947, intron 1 of 2)	intron (NM_001165947, intron 1 of 2)	2853	NM_000621	3356		NM_000621	ENSG00000102468	HTR2A	5-HT2A|HTR2	5-hydroxytryptamine receptor 2A	protein-coding
55947	chr12	109994021	109995270	+	0	NA	intron (NM_139201, intron 1 of 14)	intron (NM_139201, intron 1 of 14)	1723	NM_014776	9815		NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
102847	chr17	76479451	76479980	+	0	NA	intron (NR_164787, intron 4 of 18)	intron (NR_164787, intron 4 of 18)	12112	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
24686	chr1	247206701	247207300	+	0	NA	Intergenic	AluY|SINE|Alu	-4940	NR_037480	100500849		NR_037480	ENSG00000283881	MIR3916	mir-3916	microRNA 3916	ncRNA
44709	chr11	111597521	111598080	+	0	NA	Intergenic	AluYc|SINE|Alu	-4649	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
33191	chr10	113385121	113385600	+	0	NA	Intergenic	Intergenic	-165471	NM_001177660	3026		NM_004132	ENSG00000148702	HABP2	FSAP|HABP|HGFAL|NMTC5|PHBP	hyaluronan binding protein 2	protein-coding
232849	chr9	136785171	136786080	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-5719	NM_032928	85014		NM_032928	ENSG00000244187	TMEM141	-	transmembrane protein 141	protein-coding
164008	chr3	53170271	53170530	+	0	NA	intron (NM_001354676, intron 1 of 17)	intron (NM_001354676, intron 1 of 17)	1697	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
226130	chr9	63337851	63338400	+	0	NA	intron (NR_160668, intron 2 of 3)	intron (NR_160668, intron 2 of 3)	3587	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
100529	chr17	62482421	62482680	+	0	NA	intron (NM_001375269, intron 2 of 20)	AluSz|SINE|Alu	1437	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
230527	chr9	128355201	128355600	+	0	NA	exon (NM_005094, exon 11 of 13)	exon (NM_005094, exon 11 of 13)	3353	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
168485	chr3	143216871	143217230	+	0	NA	Intergenic	Intergenic	97279	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
126636	chr2	28817521	28818100	+	0	NA	intron (NM_001142634, intron 2 of 6)	AluSz|SINE|Alu	1813	NM_001008779	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
161688	chr3	43412901	43413100	+	0	NA	intron (NM_001204831, intron 11 of 12)	AluSz|SINE|Alu	-61038	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
67722	chr14	73489171	73489530	+	0	NA	intron (NM_203309, intron 16 of 16)	intron (NM_203309, intron 16 of 16)	-1583	NM_024644	79697		NM_024644	ENSG00000170468	RIOX1	C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66	ribosomal oxygenase 1	protein-coding
64060	chr14	22549251	22549350	+	0	NA	Intergenic	Intergenic	7762	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
115355	chr19	15222371	15222550	+	0	NA	Intergenic	AluSc8|SINE|Alu	9988	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
196301	chr6	43023271	43023430	+	0	NA	intron (NR_138081, intron 1 of 6)	AluJo|SINE|Alu	1727	NM_033112	88745		NM_033112	ENSG00000124541	RRP36	C6orf153|dJ20C7.4	ribosomal RNA processing 36	protein-coding
196034	chr6	42037021	42037300	+	0	NA	intron (NM_001287434, intron 1 of 4)	AluY|SINE|Alu	11734	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
124433	chr19	58477851	58478430	+	0	NA	exon (NM_017908, exon 4 of 7)	exon (NM_017908, exon 4 of 7)	961	NM_001304453	55663		NM_017908	ENSG00000083838	ZNF446	ZKSCAN20|ZSCAN30|ZSCAN52	zinc finger protein 446	protein-coding
203799	chr7	1254871	1255600	+	0	NA	Intergenic	Intergenic	22363	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
157458	chr22	45263671	45263830	+	0	NA	Intergenic	Intergenic	-21199	NM_006953	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
125035	chr2	9597851	9598830	+	0	NA	intron (NM_006826, intron 2 of 5)	BLACKJACK|DNA|hAT-Blackjack	32657	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
133797	chr2	127800471	127800630	+	0	NA	intron (NM_001006623, intron 1 of 7)	AluY|SINE|Alu	10621	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
68541	chr14	89283251	89283950	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	133633	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
163540	chr3	51675121	51676050	+	0	NA	intron (NM_001243727, intron 2 of 3)	L2b|LINE|L2	3958	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
48192	chr12	8036171	8036330	+	0	NA	intron (NM_018416, intron 1 of 10)	intron (NM_018416, intron 1 of 10)	3534	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
34547	chr10	133040951	133041400	+	0	NA	Intergenic	Intergenic	45522	NR_111905	100128127		NR_111905		ADGRA1-AS1	GPR123-AS1	ADGRA1 antisense RNA 1	ncRNA
89989	chr16	89860271	89861550	+	0	NA	intron (NM_032451, intron 10 of 14)	intron (NM_032451, intron 10 of 14)	-12682	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
84635	chr16	30711871	30712230	+	0	NA	exon (NM_006662, exon 12 of 34)	exon (NM_006662, exon 12 of 34)	1513	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
171318	chr3	195978051	195978350	+	0	NA	intron (NR_003264, intron 7 of 16)	intron (NR_003264, intron 7 of 16)	12079	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
107892	chr18	56670921	56671580	+	0	NA	intron (NM_001382485, intron 1 of 26)	intron (NM_001382485, intron 1 of 26)	19553	NM_001382485	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
42075	chr11	67492921	67493580	+	0	NA	intron (NM_001130848, intron 22 of 23)	CpG	3005	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
64095	chr14	22689351	22689450	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-54556	NM_001348233	79549		NM_001348233	ENSG00000255804	OR6J1	OR6J1P|OR6J2	olfactory receptor family 6 subfamily J member 1	protein-coding
213975	chr7	142800071	142800450	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	29290	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
62389	chr13	99269201	99270180	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-11262	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
30255	chr10	75116051	75116350	+	0	NA	intron (NM_144660, intron 1 of 4)	AluJr|SINE|Alu	4544	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
92759	chr17	15262801	15263200	+	0	NA	promoter-TSS (NM_001281455)	promoter-TSS (NM_001281455)	-411	NM_001281455	5376		NM_000304	ENSG00000109099	PMP22	CIDP|CMT1A|CMT1E|DSS|GAS-3|GAS3|HMSNIA|HNPP|Sp110	peripheral myelin protein 22	protein-coding
2737	chr1	10667001	10667600	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	129346	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
178388	chr4	146945201	146946130	+	0	NA	intron (NM_031956, intron 1 of 12)	intron (NM_031956, intron 1 of 12)	199	NM_001300761	83894		NM_031956	ENSG00000137473	TTC29	NYD-SP14|SPGF42|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
198772	chr6	108837621	108838480	+	0	NA	Intergenic	Intergenic	-10366	NM_001286609	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
89238	chr16	88639461	88641080	+	0	NA	3' UTR (NM_013278, exon 3 of 3)	3' UTR (NM_013278, exon 3 of 3)	1698	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
65816	chr14	54879501	54880150	+	0	NA	intron (NM_001024024, intron 1 of 6)	AluSx|SINE|Alu	-1632	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
88164	chr16	81702401	81702800	+	0	NA	intron (NM_030629, intron 16 of 20)	intron (NM_030629, intron 16 of 20)	37246	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
94682	chr17	30559771	30560130	+	0	NA	Intergenic	Intergenic	-16515	NR_015341	107133515		NR_015341		SMURF2P1-LRRC37BP1	-	SMURF2P1-LRRC37BP1 readthrough transcribed pseudogene	pseudo
175303	chr4	68271801	68272300	+	0	NA	Intergenic	Intergenic	-26356	NM_182502	132724		NM_182502	ENSG00000185873	TMPRSS11B	HATL5	transmembrane serine protease 11B	protein-coding
185679	chr5	131758551	131758850	+	0	NA	intron (NM_133372, intron 1 of 17)	intron (NM_133372, intron 1 of 17)	38317	NM_001008738	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
149529	chr21	32966021	32966480	+	0	NA	Intergenic	L1MC4a|LINE|L1	7362	NR_135522	102724502		NR_135522	ENSG00000228961	LINC01690	-	long intergenic non-protein coding RNA 1690	ncRNA
49815	chr12	31984151	31984450	+	0	NA	exon (NM_018169, exon 4 of 6)	exon (NM_018169, exon 4 of 6)	24885	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
135250	chr2	159716421	159716680	+	0	NA	intron (NM_001376235, intron 3 of 11)	AluJb|SINE|Alu	4044	NM_001376255	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
38598	chr11	46296551	46296650	+	0	NA	intron (NM_052854, intron 1 of 11)	intron (NM_052854, intron 1 of 11)	18938	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
120172	chr19	42252001	42252200	+	0	NA	intron (NM_001312656, intron 1 of 3)	intron (NM_001312656, intron 1 of 3)	1799	NM_001308402	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
1171	chr1	2216101	2217000	+	0	NA	Intergenic	Intergenic	-3830	NM_001282670	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
62187	chr13	97545951	97546350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	111981	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
211995	chr7	114082671	114082930	+	0	NA	Intergenic	Intergenic	-3527	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
196807	chr6	46013851	46014880	+	0	NA	intron (NM_001370649, intron 1 of 5)	intron (NM_001370649, intron 1 of 5)	1495	NM_016929	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
201779	chr6	149963051	149965750	+	0	NA	non-coding (NR_133659, exon 1 of 5)	non-coding (NR_133659, exon 1 of 5)	457	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
84412	chr16	30352951	30353330	+	0	NA	intron (NM_006110, intron 6 of 6)	intron (NM_006110, intron 6 of 6)	1794	NM_001243646	10421		NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
131777	chr2	98482971	98483930	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	37440	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
169137	chr3	156043901	156044250	+	0	NA	Intergenic	Intergenic	-76473	NM_001308217	7881		NM_003471	ENSG00000169282	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel subfamily A regulatory beta subunit 1	protein-coding
92279	chr17	8072201	8073080	+	0	NA	TTS (NM_001139)	TTS (NM_001139)	15076	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
30775	chr10	84339801	84340000	+	0	NA	intron (NM_001284241, intron 1 of 2)	AluSq2|SINE|Alu	11311	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
4804	chr1	23593571	23594100	+	0	NA	Intergenic	Intergenic	-33499	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
57710	chr12	122865621	122866380	+	0	NA	3' UTR (NM_024667, exon 4 of 4)	3' UTR (NM_024667, exon 4 of 4)	30124	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
20529	chr1	198686971	198687130	+	0	NA	intron (NM_002838, intron 2 of 32)	AluJo|SINE|Alu	48010	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
43268	chr11	75586551	75586850	+	0	NA	TTS (NM_033063)	TTS (NM_033063)	3504	NR_145823	105369391		NR_145823	ENSG00000255326	LOC105369391	-	uncharacterized LOC105369391	ncRNA
59853	chr13	30551121	30551550	+	0	NA	intron (NM_001370340, intron 1 of 4)	intron (NM_001370340, intron 1 of 4)	66252	NM_001370340	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
77180	chr15	80154751	80155050	+	0	NA	intron (NM_001374377, intron 2 of 14)	intron (NM_001374377, intron 2 of 14)	1901	NM_000137	2184		NM_000137	ENSG00000103876	FAH	-	fumarylacetoacetate hydrolase	protein-coding
86736	chr16	67629021	67629750	+	0	NA	intron (NM_006565, intron 9 of 11)	intron (NM_006565, intron 9 of 11)	-15759	NM_001317026	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
32909	chr10	110203601	110204150	+	0	NA	Intergenic	Intergenic	-3730	NM_130439	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
72176	chr15	29139821	29140280	+	0	NA	intron (NM_015307, intron 5 of 10)	intron (NM_015307, intron 5 of 10)	69392	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
30614	chr10	80201071	80201230	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	3341	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
166798	chr3	122568551	122568850	+	0	NA	exon (NM_138287, exon 3 of 5)	exon (NM_138287, exon 3 of 5)	-3916	NM_031458	83666		NM_031458	ENSG00000138496	PARP9	ARTD9|BAL|BAL1|MGC:7868	poly(ADP-ribose) polymerase family member 9	protein-coding
71572	chr14	106419301	106419750	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-62914	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
98677	chr17	47853021	47853280	+	0	NA	intron (NM_199262, intron 1 of 1)	intron (NM_199262, intron 1 of 1)	-1987	NM_001258248	80320		NM_199262	ENSG00000189120	SP6	AI1K|EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
121927	chr19	48449251	48449700	+	0	NA	intron (NM_031485, intron 3 of 6)	L2a|LINE|L2	3492	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
98368	chr17	46373521	46374080	+	0	NA	intron (NR_033799, intron 1 of 6)	L3|LINE|CR1	987	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
37873	chr11	33868701	33868900	+	0	NA	intron (NM_005574, intron 4 of 5)	intron (NM_005574, intron 4 of 5)	1078	NM_001142315	4005		NM_005574	ENSG00000135363	LMO2	LMO-2|RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
117174	chr19	19350271	19350580	+	0	NA	intron (NM_015329, intron 16 of 18)	AluSz|SINE|Alu	29596	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
160973	chr3	37164671	37164830	+	0	NA	intron (NM_001348298, intron 2 of 21)	intron (NM_001348298, intron 2 of 21)	9832	NM_006309	9209		NM_006309	ENSG00000093167	LRRFIP2	HUFI-2	LRR binding FLII interacting protein 2	protein-coding
115967	chr19	16898971	16899130	+	0	NA	intron (NM_015692, intron 37 of 41)	AluSx|SINE|Alu	-2103	NR_147452	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
104521	chr17	81238421	81240830	+	0	NA	promoter-TSS (NM_001363764)	promoter-TSS (NM_001363764)	-289	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
214020	chr7	143264971	143265350	+	0	NA	exon (NM_001143679, exon 4 of 7)	exon (NM_001143679, exon 4 of 7)	1719	NM_015917	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
236933	chrX	97598001	97598200	+	0	NA	intron (NM_006729, intron 26 of 26)	intron (NM_006729, intron 26 of 26)	-33565	NR_125391	10824		NR_125391	ENSG00000236256	DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
26785	chr10	23096971	23097330	+	0	NA	intron (NM_012228, intron 1 of 4)	L1ME4c|LINE|L1	1571	NM_012228	22921		NM_012228	ENSG00000148450	MSRB2	CBS-1|CBS1|CGI-131|MSRB|PILB	methionine sulfoxide reductase B2	protein-coding
63841	chr14	21510601	21511750	+	0	NA	exon (NM_019852, exon 1 of 11)	exon (NM_019852, exon 1 of 11)	165	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
102341	chr17	75487251	75488380	+	0	NA	intron (NM_001321148, intron 4 of 30)	intron (NM_001321148, intron 4 of 30)	-10733	NR_106843	102466911		NR_106843	ENSG00000284595	MIR6785	hsa-mir-6785	microRNA 6785	ncRNA
133542	chr2	120312971	120313700	+	0	NA	Intergenic	Intergenic	-32801	NM_002193	3625		NM_002193	ENSG00000163083	INHBB	-	inhibin subunit beta B	protein-coding
128342	chr2	54726721	54727230	+	0	NA	intron (NM_001039753, intron 1 of 40)	intron (NM_001039753, intron 1 of 40)	1963	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
212279	chr7	123712251	123712550	+	0	NA	intron (NM_003941, intron 1 of 10)	L1MC4|LINE|L1	36603	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
40850	chr11	65050501	65050700	+	0	NA	intron (NM_005468, intron 8 of 17)	AluSx|SINE|Alu	7953	NM_005468	10004		NM_005468	ENSG00000168060	NAALADL1	HILAP|I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase like 1	protein-coding
80349	chr16	2500101	2500300	+	0	NA	intron (NM_001199107, intron 6 of 7)	CpG	-13526	NM_001198569	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
111145	chr19	3286851	3287280	+	0	NA	intron (NR_033342, intron 10 of 12)	intron (NR_033342, intron 10 of 12)	61787	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
179016	chr4	164779801	164780000	+	0	NA	intron (NM_001352885, intron 2 of 2)	intron (NM_001352885, intron 2 of 2)	25769	NM_001352885	100505989		NM_001352885	ENSG00000248771	SMIM31	LINC01207|h.EPR	small integral membrane protein 31	protein-coding
138679	chr2	213037551	213038150	+	0	NA	intron (NM_001371277, intron 5 of 6)	intron (NM_001371277, intron 5 of 6)	-111514	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
18628	chr1	166166051	166167380	+	0	NA	promoter-TSS (NR_135199)	promoter-TSS (NR_135199)	40	NR_163271	149297		NM_001017961	ENSG00000188859	FAM78B	-	family with sequence similarity 78 member B	protein-coding
225509	chr9	35692051	35692150	+	0	NA	Intergenic	L2c|LINE|L2	-2044	NM_001301227	7169		NM_003289	ENSG00000198467	TPM2	AMCD1|CMYP23|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB	tropomyosin 2	protein-coding
208677	chr7	73225821	73226080	+	0	NA	intron (NR_003186, intron 2 of 7)	intron (NR_003186, intron 2 of 7)	5311	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
146179	chr20	48751051	48752100	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	76424	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
63148	chr13	113588751	113589250	+	0	NA	intron (NR_026580, intron 2 of 10)	intron (NR_026580, intron 2 of 10)	4247	NM_007111	7027		NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
51485	chr12	52083221	52084180	+	0	NA	intron (NM_001369216, intron 1 of 2)	intron (NM_001369216, intron 1 of 2)	-1046	NR_120439	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
180757	chr5	32141871	32142250	+	0	NA	intron (NM_022130, intron 2 of 3)	SVA_D|Retroposon|SVA	32259	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
173726	chr4	15961711	15962600	+	0	NA	intron (NM_031950, intron 1 of 1)	MER5B|DNA|hAT-Charlie	1020	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
143117	chr20	23417371	23418230	+	0	NA	intron (NR_104266, intron 1 of 10)	intron (NR_104266, intron 1 of 10)	3688	NR_104266	63908		NM_022080	ENSG00000125814	NAPB	DEE107|SNAP-BETA|SNAPB	NSF attachment protein beta	protein-coding
129201	chr2	68204771	68204930	+	0	NA	intron (NM_000945, intron 2 of 5)	L2b|LINE|L2	46962	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
185646	chr5	131540201	131540800	+	0	NA	intron (NM_016340, intron 6 of 27)	AluJr4|SINE|Alu	94729	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
119254	chr19	39504151	39504750	+	0	NA	intron (NM_016941, intron 5 of 7)	intron (NM_016941, intron 5 of 7)	5503	NM_203486	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
67655	chr14	73093471	73094100	+	0	NA	intron (NM_021239, intron 6 of 18)	AluSq2|SINE|Alu	35251	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
153863	chr22	30243621	30244280	+	0	NA	exon (NM_002309, exon 3 of 3)	exon (NM_002309, exon 3 of 3)	-2260	NR_148946	91370		NM_052856	ENSG00000268812	LIF-AS2	TP53LC08	LIF antisense RNA 2	ncRNA
189432	chr5	172897471	172897630	+	0	NA	intron (NM_001031711, intron 3 of 9)	intron (NM_001031711, intron 3 of 9)	-17533	NR_162113	113218510		NR_162113		MIR10523	-	microRNA 10523	ncRNA
177208	chr4	108398051	108398350	+	0	NA	Intergenic	Intergenic	-159033	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
10761	chr1	77196271	77196630	+	0	NA	intron (NM_005482, intron 3 of 10)	L1PA16|LINE|L1	22980	NM_005482	10026		NM_005482	ENSG00000142892	PIGK	GPI8|NEDHCAS	phosphatidylinositol glycan anchor biosynthesis class K	protein-coding
41138	chr11	65583421	65584450	+	0	NA	intron (NM_001099409, intron 9 of 18)	intron (NM_001099409, intron 9 of 18)	7882	NM_001099409	254102		NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1 like 1	protein-coding
140628	chr2	233458171	233458330	+	0	NA	intron (NM_001377259, intron 19 of 27)	intron (NM_001377259, intron 19 of 27)	31648	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
218741	chr8	58807451	58808220	+	0	NA	intron (NM_014729, intron 8 of 8)	intron (NM_014729, intron 8 of 8)	-147982	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
99533	chr17	50354771	50356200	+	0	NA	intron (NM_022167, intron 4 of 10)	intron (NM_022167, intron 4 of 10)	9359	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
128193	chr2	53957471	53957630	+	0	NA	intron (NM_014614, intron 1 of 46)	MER1A|DNA|hAT-Charlie	13443	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
150557	chr21	43092051	43092650	+	0	NA	TTS (NM_006758).2	TTS (NM_006758).2	15220	NM_006758	7307		NM_006758	ENSG00000160201	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
45839	chr11	119376201	119376900	+	0	NA	intron (NM_004205, intron 1 of 12)	intron (NM_004205, intron 1 of 12)	5140	NM_004205	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
206980	chr7	38317401	38318100	+	0	NA	Intergenic	Intergenic	-23827	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
64325	chr14	23660151	23660880	+	0	NA	Intergenic	Intergenic	24151	NM_005794	10202		NM_005794	ENSG00000100867	DHRS2	HEP27|SDR25C1	dehydrogenase/reductase 2	protein-coding
210275	chr7	99414851	99414950	+	0	NA	intron (NM_001370410, intron 3 of 5)	intron (NM_001370410, intron 3 of 5)	5728	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
41831	chr11	67078201	67078600	+	0	NA	Intergenic	Intergenic	21553	NM_014578	29984		NM_014578	ENSG00000173156	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
233088	chr9	137106351	137106650	+	0	NA	intron (NM_016219, intron 9 of 12)	intron (NM_016219, intron 9 of 12)	8233	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
107725	chr18	49858701	49859050	+	0	NA	intron (NM_001080467, intron 29 of 39)	intron (NM_001080467, intron 29 of 39)	44852	NR_117096	103091864		NR_117096	ENSG00000267322	SNHG22	SCARNA17|SCARNA17HG	small nucleolar RNA host gene 22	ncRNA
222486	chr8	140432001	140432280	+	0	NA	intron (NM_001374684, intron 4 of 21)	intron (NM_001374684, intron 4 of 21)	25604	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
117402	chr19	19616821	19617400	+	0	NA	intron (NM_025245, intron 1 of 7)	L2b|LINE|L2	1577	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
181423	chr5	40799551	40800180	+	0	NA	Intergenic	Intergenic	-1670	NM_001355034	5562		NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPK alpha 1|AMPKa1	protein kinase AMP-activated catalytic subunit alpha 1	protein-coding
64473	chr14	24269521	24270130	+	0	NA	intron (NM_182836, intron 5 of 16)	intron (NM_182836, intron 5 of 16)	1802	NM_004581	5875		NM_004581	ENSG00000100949	RABGGTA	PTAR3	Rab geranylgeranyltransferase subunit alpha	protein-coding
42493	chr11	70201551	70202200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1421	NM_003824	8772		NM_003824	ENSG00000168040	FADD	GIG3|IMD90|MORT1	Fas associated via death domain	protein-coding
23941	chr1	235107471	235107880	+	0	NA	Intergenic	Intergenic	20262	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
142556	chr20	5167801	5168000	+	0	NA	intron (NM_003818, intron 1 of 12)	intron (NM_003818, intron 1 of 12)	40892	NM_003818	8760		NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
164464	chr3	59790451	59790550	+	0	NA	intron (NM_001354590, intron 7 of 8)	(TC)n|Simple_repeat|Simple_repeat	-132003	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
232876	chr9	136827901	136828300	+	0	NA	intron (NM_024718, intron 3 of 14)	intron (NM_024718, intron 3 of 14)	-2857	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
172434	chr4	1868051	1868350	+	0	NA	Intergenic	AluJb|SINE|Alu	-3193	NM_001042424	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
29105	chr10	68334701	68335430	+	0	NA	intron (NM_001322437, intron 1 of 9)	intron (NM_001322437, intron 1 of 9)	-2137	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
168992	chr3	152416951	152417780	+	0	NA	intron (NM_207295, intron 3 of 8)	intron (NM_207295, intron 3 of 8)	-76375	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
8701	chr1	42191371	42191730	+	0	NA	exon (NM_014947, exon 9 of 13)	exon (NM_014947, exon 9 of 13)	-26805	NM_033553	2980		NM_033553	ENSG00000197273	GUCA2A	GCAP-I|GUCA2|STARA	guanylate cyclase activator 2A	protein-coding
109628	chr19	986821	987280	+	0	NA	intron (NM_001372085, intron 4 of 11)	intron (NM_001372085, intron 4 of 11)	2705	NM_024100	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
221242	chr8	122502271	122502630	+	0	NA	intron (NR_131202, intron 2 of 3)	L2c|LINE|L2	66194	NR_131202	105375734		NR_131202		SMILR	-	smooth muscle induced lncRNA, enhancer of proliferation	ncRNA
95657	chr17	38138001	38138250	+	0	NA	exon (NM_001123391, exon 14 of 14)	exon (NM_001123391, exon 14 of 14)	10155	NM_001291466	102723859		NM_001291466	ENSG00000278599	TBC1D3E	PRC17|TBC1D3|TBC1D3A|TBC1DE3	TBC1 domain family member 3E	protein-coding
159879	chr3	16846671	16846830	+	0	NA	Intergenic	Intergenic	-38205	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
136332	chr2	175171051	175171150	+	0	NA	Intergenic	Intergenic	-2894	NM_001256091	1386		NM_001880	ENSG00000115966	ATF2	CRE-BP1|CREB-2|CREB2|HB16|TREB7	activating transcription factor 2	protein-coding
35084	chr11	623071	623550	+	0	NA	intron (NM_001171968, intron 3 of 14)	AluSx|SINE|Alu	1645	NM_001171968	53841		NM_017717	ENSG00000099834	CDHR5	MLPCDH|MU-PCDH|MUCDHL|MUPCDH	cadherin related family member 5	protein-coding
129080	chr2	65107151	65107450	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSx|SINE|Alu	22806	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
182458	chr5	62326751	62327230	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	20784	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
219057	chr8	65798221	65798550	+	0	NA	intron (NM_001242318, intron 1 of 12)	AluSx|SINE|Alu	-9328	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
98924	chr17	48615271	48615650	+	0	NA	promoter-TSS (NM_024016)	promoter-TSS (NM_024016)	-168	NM_024016	3218		NM_024016	ENSG00000120068	HOXB8	HOX2|HOX2D|Hox-2.4	homeobox B8	protein-coding
29498	chr10	70597501	70597850	+	0	NA	3' UTR (NM_001083116, exon 3 of 3)	3' UTR (NM_001083116, exon 3 of 3)	5066	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
186045	chr5	134047771	134047930	+	0	NA	Intergenic	Intergenic	-42875	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
196586	chr6	44181271	44182350	+	0	NA	intron (NM_007058, intron 19 of 22)	intron (NM_007058, intron 19 of 22)	22990	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
105476	chr17	83068751	83069800	+	0	NA	Intergenic	Intergenic	-10334	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
5243	chr1	25013271	25013430	+	0	NA	Intergenic	Intergenic	-10153	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
28631	chr10	58666071	58666380	+	0	NA	intron (NM_001080512, intron 2 of 20)	MER57A1|LTR|ERV1	-48790	NR_027508	728640		NR_027508		FAM133CP	-	family with sequence similarity 133, member A pseudogene	pseudo
228943	chr9	113374101	113374530	+	0	NA	exon (NM_031219, exon 2 of 2)	exon (NM_031219, exon 2 of 2)	2285	NM_031219	81932		NM_031219	ENSG00000119431	HDHD3	2810435D12Rik|C9orf158	haloacid dehalogenase like hydrolase domain containing 3	protein-coding
66402	chr14	61504301	61504500	+	0	NA	intron (NM_006255, intron 10 of 13)	AluSz|SINE|Alu	65794	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
161293	chr3	39334151	39334450	+	0	NA	TTS (NM_005201)	TTS (NM_005201)	4591	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
11543	chr1	91013251	91013800	+	0	NA	intron (NM_032186, intron 1 of 3)	intron (NM_032186, intron 1 of 3)	7983	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
183161	chr5	75142871	75143380	+	0	NA	intron (NM_001164443, intron 14 of 24)	MLT1D|LTR|ERVL-MaLR	-90567	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
237428	chrX	119657151	119657450	+	0	NA	intron (NM_145799, intron 3 of 10)	intron (NM_145799, intron 3 of 10)	-10452	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
166766	chr3	122356471	122356650	+	0	NA	Intergenic	Intergenic	26671	NM_001308326	131076		NM_001017928	ENSG00000160124	MIX23	CCDC58	mitochondrial matrix import factor 23	protein-coding
50584	chr12	48409901	48410300	+	0	NA	Intergenic	L1P2|LINE|L1	-58854	NM_001172682	121274		NM_152320	ENSG00000167528	ZNF641	-	zinc finger protein 641	protein-coding
23778	chr1	233296701	233296900	+	0	NA	Intergenic	Intergenic	-1075	NM_014801	80003		NM_014801	ENSG00000135749	PCNX2	PCNXL2	pecanex 2	protein-coding
110451	chr19	1992371	1993430	+	0	NA	intron (NM_017797, intron 3 of 8)	intron (NM_017797, intron 3 of 8)	22814	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
185990	chr5	133489671	133489900	+	0	NA	intron (NM_015082, intron 3 of 15)	intron (NM_015082, intron 3 of 15)	-62079	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
229337	chr9	120908871	120909030	+	0	NA	intron (NM_005658, intron 7 of 7)	AluJo|SINE|Alu	5622	NM_001190947	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
120404	chr19	43775901	43776550	+	0	NA	intron (NM_002250, intron 2 of 8)	intron (NM_002250, intron 2 of 8)	4748	NM_002250	3783		NM_002250	ENSG00000104783	KCNN4	DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium calcium-activated channel subfamily N member 4	protein-coding
194962	chr6	35305151	35306050	+	0	NA	intron (NM_022047, intron 1 of 10)	AluSx1|SINE|Alu	7782	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
46867	chr11	133944151	133944250	+	0	NA	intron (NM_001277285, intron 3 of 19)	intron (NM_001277285, intron 3 of 19)	12768	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
2885	chr1	11645371	11646730	+	0	NA	Intergenic	Intergenic	-8357	NM_183412	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
135526	chr2	162127471	162127630	+	0	NA	intron (NR_110255, intron 1 of 3)	MIRb|SINE|MIR	13109	NR_110255	101929532		NR_110255	ENSG00000236841	LOC101929532	-	uncharacterized LOC101929532	ncRNA
76566	chr15	75258351	75258530	+	0	NA	promoter-TSS (NM_001164404)	promoter-TSS (NM_001164404)	-118	NM_001164404	653641		NM_001164404	ENSG00000167195	GOLGA6C	-	golgin A6 family member C	protein-coding
198494	chr6	106336501	106336700	+	0	NA	Intergenic	Intergenic	-10780	NM_001286107	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
6597	chr1	28767821	28768280	+	0	NA	intron (NM_016258, intron 4 of 4)	AluSx3|SINE|Alu	31110	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
100553	chr17	62617671	62618030	+	0	NA	Intergenic	Intergenic	-9820	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
24940	chr10	1239421	1239780	+	0	NA	intron (NM_018702, intron 5 of 9)	intron (NM_018702, intron 5 of 9)	79832	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
217911	chr8	37901901	37902330	+	0	NA	Intergenic	AluJr|SINE|Alu	-2618	NM_025151	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
101656	chr17	68283971	68284630	+	0	NA	intron (NM_001174166, intron 1 of 6)	AluSz|SINE|Alu	6827	NM_001174166	9120		NM_004694	ENSG00000108932	SLC16A6	MCT6|MCT7	solute carrier family 16 member 6	protein-coding
187843	chr5	147188751	147189100	+	0	NA	intron (NR_147190, intron 2 of 3)	intron (NR_147190, intron 2 of 3)	45934	NR_147190	105378217		NR_147190		STK32A-AS1	-	STK32A antisense RNA 1	ncRNA
233869	chrX	1551121	1551380	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-14065	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
103867	chr17	79746971	79747130	+	0	NA	Intergenic	Intergenic	16107	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
207578	chr7	44951421	44951680	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	27465	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
201150	chr6	142918501	142918700	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	26576	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
37440	chr11	17598971	17599200	+	0	NA	intron (NM_001292063, intron 30 of 55)	intron (NM_001292063, intron 30 of 55)	51826	NM_001292063	340990		NM_198497	ENSG00000188162	OTOG	DFNB18B|MLEMP|OTGN	otogelin	protein-coding
137762	chr2	198309701	198310000	+	0	NA	intron (NR_110267, intron 2 of 2)	intron (NR_110267, intron 2 of 2)	65247	NR_110267	101927619		NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
175742	chr4	77724271	77724630	+	0	NA	intron (NM_144571, intron 11 of 11)	AluJo|SINE|Alu	94614	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
13119	chr1	111635571	111635930	+	0	NA	intron (NM_001010935, intron 2 of 8)	AluSx|SINE|Alu	-15352	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
162717	chr3	49010501	49011180	+	0	NA	intron (NM_001320547, intron 1 of 5)	AluY|SINE|Alu	3235	NM_001320547	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
31505	chr10	96691101	96691400	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	29264	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
229483	chr9	122128171	122129030	+	0	NA	Intergenic	Intergenic	-8433	NR_039690	100616312		NR_039690	ENSG00000266583	MIR4478	mir-4478	microRNA 4478	ncRNA
75333	chr15	65376371	65377280	+	0	NA	intron (NM_004884, intron 1 of 13)	intron (NM_004884, intron 1 of 13)	1177	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
130446	chr2	85430371	85430530	+	0	NA	intron (NM_201594, intron 10 of 20)	intron (NM_201594, intron 10 of 20)	11519	NM_201594								
271	chr1	929451	930230	+	0	NA	intron (NM_001385641, intron 2 of 13)	intron (NM_001385641, intron 2 of 13)	4109	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
101906	chr17	74435551	74435750	+	0	NA	intron (NM_018653, intron 1 of 3)	intron (NM_018653, intron 1 of 3)	1953	NM_018653	55890		NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding
53087	chr12	57740101	57740300	+	0	NA	intron (NM_014770, intron 1 of 17)	intron (NM_014770, intron 1 of 17)	-1954	NM_001122772	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
227614	chr9	92760771	92760930	+	0	NA	intron (NM_001003800, intron 1 of 6)	intron (NM_001003800, intron 1 of 6)	3983	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
32533	chr10	103069351	103069960	+	0	NA	intron (NM_199076, intron 5 of 6)	intron (NM_199076, intron 5 of 6)	84166	NM_001351191	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
167336	chr3	128748001	128748830	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	22232	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
172319	chr4	1651851	1652550	+	0	NA	intron (NM_001297435, intron 4 of 5)	(CA)n|Simple_repeat|Simple_repeat	31791	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
70702	chr14	103273171	103273600	+	0	NA	Intergenic	CpG	-43899	NR_135269	105378183		NR_135269		LOC105378183	-	uncharacterized LOC105378183	ncRNA
144373	chr20	35094971	35095330	+	0	NA	Intergenic	AluSx|SINE|Alu	-2335	NM_199368	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
238756	chrX	154344201	154345400	+	0	NA	Intergenic	Intergenic	29834	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
47137	chr12	746901	747100	+	0	NA	Intergenic	AluSx3|SINE|Alu	-5579	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
146750	chr20	50814851	50816050	+	0	NA	intron (NM_198799, intron 1 of 4)	intron (NM_198799, intron 1 of 4)	20389	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
20040	chr1	185373871	185374030	+	0	NA	Intergenic	Intergenic	-38911	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
4165	chr1	19389421	19389680	+	0	NA	intron (NM_001313932, intron 2 of 4)	AluY|SINE|Alu	77224	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
149553	chr21	33199791	33200780	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-29610	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
231848	chr9	132800021	132800630	+	0	NA	intron (NM_001371771, intron 10 of 12)	intron (NM_001371771, intron 10 of 12)	77959	NM_001317958	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
91300	chr17	4215271	4215900	+	0	NA	intron (NM_001330063, intron 4 of 24)	intron (NM_001330063, intron 4 of 24)	48262	NM_001257999	51479		NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
23194	chr1	226987571	226987930	+	0	NA	TTS (NM_020247)	TTS (NM_020247)	47456	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
147140	chr20	56343821	56344180	+	0	NA	Intergenic	CpG	-14974	NM_080821	116151		NM_080821	ENSG00000124098	FAM210B	5A3|C20orf108|dJ1167H4.1	family with sequence similarity 210 member B	protein-coding
52048	chr12	54015221	54015830	+	0	NA	Intergenic	Intergenic	-1363	NM_153693	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
162689	chr3	48941651	48941750	+	0	NA	intron (NM_001349214, intron 3 of 15)	AluY|SINE|Alu	-22315	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
219821	chr8	81669351	81669450	+	0	NA	intron (NM_001144879, intron 6 of 7)	MSTC-int|LTR|ERVL-MaLR	16925	NM_005536	3612		NM_005536	ENSG00000133731	IMPA1	IMP|IMPA|MRT59	inositol monophosphatase 1	protein-coding
66612	chr14	63712001	63713580	+	0	NA	intron (NM_030791, intron 1 of 2)	AluJb|SINE|Alu	15275	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
78715	chr15	98581821	98582080	+	0	NA	Intergenic	Intergenic	-66589	NM_001291858	3480		NM_000875	ENSG00000140443	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin like growth factor 1 receptor	protein-coding
192780	chr6	26536301	26537700	+	0	NA	Intergenic	Intergenic	-1366	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
58185	chr12	125047771	125048500	+	0	NA	Intergenic	Intergenic	-17300	NM_023928	65985		NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
157141	chr22	42829271	42829450	+	0	NA	intron (NM_001142293, intron 5 of 14)	intron (NM_001142293, intron 5 of 14)	27913	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
210612	chr7	100436001	100438680	+	0	NA	promoter-TSS (NM_001346938)	promoter-TSS (NM_001346938)	-843	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
70348	chr14	101860501	101860700	+	0	NA	intron (NM_178587, intron 2 of 11)	L1MB7|LINE|L1	50737	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
190103	chr5	177875171	177876430	+	0	NA	non-coding (NR_003615, exon 1 of 6)	non-coding (NR_003615, exon 1 of 6)	539	NR_003615	728554		NR_003615	ENSG00000291113	LOC728554	-	THO complex 3 pseudogene	pseudo
227713	chr9	93037571	93037980	+	0	NA	Intergenic	Intergenic	-20913	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
78674	chr15	95446851	95447400	+	0	NA	intron (NR_027133, intron 1 of 5)	intron (NR_027133, intron 1 of 5)	14032	NR_027133	145820		NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
174530	chr4	40183771	40184180	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-7105	NM_001278368	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
213298	chr7	135144101	135144300	+	0	NA	intron (NM_001305630, intron 2 of 2)	L1M4b|LINE|L1	-3872	NM_018295	55281		NM_018295	ENSG00000146859	TMEM140	-	transmembrane protein 140	protein-coding
156751	chr22	41832501	41834280	+	0	NA	non-coding (NR_157279, exon 2 of 2)	non-coding (NR_157279, exon 2 of 2)	285	NR_103834	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
184145	chr5	95285251	95285550	+	0	NA	promoter-TSS (NM_024717)	promoter-TSS (NM_024717)	-825	NM_024717	79772		NM_024717	ENSG00000175471	MCTP1	-	multiple C2 and transmembrane domain containing 1	protein-coding
162560	chr3	48652571	48652730	+	0	NA	intron (NM_001407, intron 10 of 34)	intron (NM_001407, intron 10 of 34)	-8370	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
4356	chr1	20664771	20664930	+	0	NA	intron (NM_020816, intron 14 of 14)	intron (NM_020816, intron 14 of 14)	-3481	NM_005216	1650		NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein-coding
177184	chr4	108164901	108165100	+	0	NA	intron (NM_016269, intron 2 of 11)	intron (NM_016269, intron 2 of 11)	1797	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
39279	chr11	58522171	58522600	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-14085	NM_001005218	219968		NM_001005218	ENSG00000198283	OR5B21	-	olfactory receptor family 5 subfamily B member 21	protein-coding
49691	chr12	30807501	30807780	+	0	NA	Intergenic	L1M3f|LINE|L1	11959	NR_040245	100287314		NR_040245		LINC00941	lncIAPF|lncRNA-MUF	long intergenic non-protein coding RNA 941	ncRNA
99909	chr17	56912571	56912990	+	0	NA	intron (NM_005082, intron 1 of 8)	MIRb|SINE|MIR	1269	NM_005082	7706		NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
186551	chr5	138459051	138460430	+	0	NA	Intergenic	Intergenic	-5739	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
48438	chr12	9699571	9700250	+	0	NA	TTS (NM_001197319)	TTS (NM_001197319)	30197	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
160685	chr3	32286071	32286430	+	0	NA	intron (NM_001320308, intron 1 of 2)	MER58B|DNA|hAT-Charlie	47570	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
196295	chr6	43011171	43011600	+	0	NA	TTS (NM_001318942)	TTS (NM_001318942)	2561	NM_014623	4201		NM_014623	ENSG00000124733	MEA1	HYS|MEA	male-enhanced antigen 1	protein-coding
75654	chr15	67542401	67543900	+	0	NA	5' UTR (NM_002757, exon 1 of 21)	5' UTR (NM_002757, exon 1 of 21)	447	NM_145160	5607		NM_002757	ENSG00000137764	MAP2K5	HsT17454|MAPKK5|MEK5|PRKMK5	mitogen-activated protein kinase kinase 5	protein-coding
125294	chr2	10536021	10536600	+	0	NA	Intergenic	Intergenic	86582	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
114423	chr19	12673021	12673580	+	0	NA	exon (NM_032332, exon 8 of 9)	exon (NM_032332, exon 8 of 9)	3547	NM_032332	84292		NM_032332	ENSG00000123154	WDR83	MORG1	WD repeat domain 83	protein-coding
115025	chr19	14087471	14087880	+	0	NA	TTS (NM_138352)	TTS (NM_138352)	-1892	NM_001277378	646457		NM_001277378	ENSG00000188032	C19orf67	-	chromosome 19 open reading frame 67	protein-coding
30404	chr10	78743001	78743400	+	0	NA	Intergenic	Intergenic	324248	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
78927	chr15	101246171	101246500	+	0	NA	intron (NM_014918, intron 1 of 2)	intron (NM_014918, intron 1 of 2)	5713	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
121065	chr19	45867551	45867650	+	0	NA	intron (NM_004497, intron 1 of 1)	AluSz|SINE|Alu	3274	NM_004497	3171		NM_004497	ENSG00000170608	FOXA3	FKHH3|HNF3G|TCF3G	forkhead box A3	protein-coding
103438	chr17	78263251	78263930	+	0	NA	non-coding (NR_073178, exon 6 of 7)	non-coding (NR_073178, exon 6 of 7)	14902	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
51394	chr12	51952951	51953700	+	0	NA	promoter-TSS (NM_020327)	promoter-TSS (NM_020327)	-55	NM_020327	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
84602	chr16	30668071	30668950	+	0	NA	intron (NM_001105079, intron 15 of 17)	intron (NM_001105079, intron 15 of 17)	10079	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
160418	chr3	28285801	28286000	+	0	NA	intron (NM_001331189, intron 3 of 4)	AluY|SINE|Alu	44281	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
134471	chr2	143248251	143249150	+	0	NA	intron (NM_018460, intron 5 of 13)	L2a|LINE|L2	119281	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
3829	chr1	16894171	16894650	+	0	NA	Intergenic	Intergenic	-1570	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
213266	chr7	134640901	134641900	+	0	NA	Intergenic	Intergenic	-5379	NM_001293085	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
69444	chr14	94173271	94176280	+	0	NA	promoter-TSS (NM_001348142)	promoter-TSS (NM_001348142)	453	NM_001348144	57718		NM_020958	ENSG00000119698	PPP4R4	CFAP14|KIAA1622|PP4R4	protein phosphatase 4 regulatory subunit 4	protein-coding
216120	chr8	11297501	11297700	+	0	NA	intron (NM_015458, intron 2 of 9)	MamSINE1|SINE|tRNA-RTE	12784	NM_015458	66036		NM_015458	ENSG00000104643	MTMR9	C8orf9|LIP-STYX|MTMR8	myotubularin related protein 9	protein-coding
156939	chr22	42316901	42317880	+	0	NA	Intergenic	Intergenic	-33463	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
133107	chr2	112643021	112643850	+	0	NA	intron (NR_033871, intron 2 of 4)	intron (NR_033871, intron 2 of 4)	745	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
203109	chr6	166515151	166515350	+	0	NA	intron (NM_021135, intron 3 of 20)	intron (NM_021135, intron 3 of 20)	-5817	NR_031734	100302141		NR_031734	ENSG00000222958	MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	ncRNA
116626	chr19	18296671	18296900	+	0	NA	Intergenic	Intergenic	14708	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
124881	chr2	8327451	8327750	+	0	NA	intron (NR_152741, intron 1 of 9)	LTR16D1|LTR|ERVL	819	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
142220	chr20	3077051	3077830	+	0	NA	Intergenic	AluSz6|SINE|Alu	5820	NM_000915	5020		NM_000915	ENSG00000101405	OXT	OT|OT-NPI|OXT-NPI	oxytocin/neurophysin I prepropeptide	protein-coding
234255	chrX	13110801	13111000	+	0	NA	Intergenic	Intergenic	-66280	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
144079	chr20	33710471	33710630	+	0	NA	intron (NM_183397, intron 2 of 2)	intron (NM_183397, intron 2 of 2)	9760	NM_007238	11264		NM_007238	ENSG00000101417	PXMP4	PMP24	peroxisomal membrane protein 4	protein-coding
172013	chr4	967021	967350	+	0	NA	exon (NM_001347, exon 9 of 23)	exon (NM_001347, exon 9 of 23)	6384	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
227136	chr9	86277051	86278130	+	0	NA	intron (NM_030940, intron 1 of 3)	intron (NM_030940, intron 1 of 3)	4948	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
6895	chr1	31548651	31549530	+	0	NA	Intergenic	Intergenic	-27395	NM_001204414	64129		NM_022164	ENSG00000142910	TINAGL1	ARG1|LCN7|LIECG3|TINAGRP	tubulointerstitial nephritis antigen like 1	protein-coding
183622	chr5	80223701	80224100	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluSq2|SINE|Alu	32148	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
152221	chr22	20138521	20139380	+	0	NA	intron (NM_001185024, intron 1 of 10)	intron (NM_001185024, intron 1 of 10)	7146	NM_013373	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
153388	chr22	24601371	24601730	+	0	NA	intron (NM_013430, intron 1 of 15)	intron (NM_013430, intron 1 of 15)	-1643	NM_013421	2678		NM_005265	ENSG00000100031	GGT1	CD224|D22S672|D22S732|GGT|GGT 1|GGTD|GTG	gamma-glutamyltransferase 1	protein-coding
2587	chr1	9829001	9830200	+	0	NA	Intergenic	AluJo|SINE|Alu	-5074	NM_014944	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
64840	chr14	35159851	35160200	+	0	NA	intron (NM_001256678, intron 3 of 6)	intron (NM_001256678, intron 3 of 6)	37473	NM_001256679	9692		NM_014672	ENSG00000100890	PRORP	COXPD54|KIAA0391|MRPP3	protein only RNase P catalytic subunit	protein-coding
127630	chr2	43127071	43128230	+	0	NA	Intergenic	Intergenic	-25205	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
57259	chr12	121583021	121583580	+	0	NA	Intergenic	Intergenic	-2277	NM_032590	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
67316	chr14	69620201	69620730	+	0	NA	intron (NM_014734, intron 1 of 5)	L2a|LINE|L2	8869	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
170315	chr3	184352821	184353150	+	0	NA	intron (NM_004366, intron 18 of 23)	intron (NM_004366, intron 18 of 23)	8620	NM_001171089	1181		NM_004366	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|FHA2|FHII|HALD2|LKPAT|clC-2	chloride voltage-gated channel 2	protein-coding
86673	chr16	67488751	67489250	+	0	NA	Intergenic	MER61F|LTR|ERV1	-5453	NM_001138	181		NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related neuropeptide	protein-coding
233735	chrX	1376551	1376850	+	0	NA	intron (NM_001267713, intron 7 of 9).2	MLT1B|LTR|ERVL-MaLR	15413	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
27004	chr10	26821971	26822330	+	0	NA	intron (NR_145410, intron 2 of 11)	L1ME1|LINE|L1	38808	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
225097	chr9	33417051	33418280	+	0	NA	Intergenic	Intergenic	-14983	NM_001318156	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
181459	chr5	41900701	41901000	+	0	NA	Intergenic	Intergenic	-3494	NM_175921	285636		NM_175921	ENSG00000205765	RIMOC1	C5orf51	RAB7A interacting MON1-CCZ1 complex subunit 1	protein-coding
34190	chr10	128187151	128188250	+	0	NA	Intergenic	Intergenic	-61277	NM_001145966	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
97013	chr17	42298371	42298530	+	0	NA	intron (NM_001288719, intron 4 of 17)	AluSz|SINE|Alu	10394	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
124387	chr19	58392401	58393030	+	0	NA	promoter-TSS (NR_162103)	promoter-TSS (NR_162103)	-649	NR_162103	113218487		NR_162103		MIR10394	-	microRNA 10394	ncRNA
38634	chr11	46356301	46356500	+	0	NA	intron (NM_001199266, intron 1 of 30)	intron (NM_001199266, intron 1 of 30)	-5206	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
26857	chr10	24886151	24886650	+	0	NA	intron (NM_020200, intron 3 of 8)	MIRc|SINE|MIR	66206	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
4886	chr1	23789471	23790230	+	0	NA	Intergenic	Intergenic	-1295	NM_007260	11313		NM_007260	ENSG00000011009	LYPLA2	APT-2|APT2|DJ886K2.4	lysophospholipase 2	protein-coding
140071	chr2	231437801	231438000	+	0	NA	Intergenic	L1PA16|LINE|L1	18036	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
216674	chr8	22151571	22152250	+	0	NA	exon (NM_139278, exon 6 of 8)	exon (NM_139278, exon 6 of 8)	4896	NM_139278	203190		NM_139278	ENSG00000168481	LGI3	IDDMDS|LGIL4	leucine rich repeat LGI family member 3	protein-coding
19822	chr1	182789051	182789980	+	0	NA	promoter-TSS (NM_001200050)	promoter-TSS (NM_001200050)	66	NM_001200050	80896		NM_030769	ENSG00000135838	NPL	C112|C1orf13|NAL|NPL1	N-acetylneuraminate pyruvate lyase	protein-coding
199838	chr6	127749551	127750480	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	105173	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
19993	chr1	185158901	185159100	+	0	NA	intron (NM_017673, intron 1 of 18)	MLT1F|LTR|ERVL-MaLR	1833	NM_017673	54823		NM_017673	ENSG00000116668	SWT1	C1orf26|HsSwt1	SWT1 RNA endoribonuclease homolog	protein-coding
43926	chr11	90271151	90271250	+	0	NA	intron (NR_104190, intron 1 of 6)	intron (NR_104190, intron 1 of 6)	19968	NR_104190	101929222		NR_104190	ENSG00000261645	DISC1FP1	Boymaw	DISC1 fusion partner 1	ncRNA
152843	chr22	22060651	22060830	+	0	NA	Intergenic	Intergenic	-16806	NR_135291	649179		NR_135291	ENSG00000290847	PRAMENP	PRAMEF24P|PRAMEL	PRAME N-terminal like, pseudogene	pseudo
34165	chr10	128077371	128077730	+	0	NA	intron (NM_001323354, intron 17 of 19)	intron (NM_001323354, intron 17 of 19)	-15125	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
166108	chr3	111066721	111067150	+	0	NA	intron (NR_045114, intron 2 of 3)	LTR50|LTR|ERVL	3024	NR_045114	100506555		NR_045114		NECTIN3-AS1	PVRL3-AS1	NECTIN3 antisense RNA 1	ncRNA
224030	chr9	3474901	3476100	+	0	NA	intron (NM_001282116, intron 1 of 16)	LTR13|LTR|ERVK	13934	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
150070	chr21	37397601	37397930	+	0	NA	intron (NM_001347723, intron 1 of 10)	MER5A|DNA|hAT-Charlie	-21140	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
118378	chr19	35723001	35723400	+	0	NA	exon (NM_014727, exon 6 of 37)	exon (NM_014727, exon 6 of 37)	5197	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
226971	chr9	81682801	81683000	+	0	NA	intron (NM_001303104, intron 4 of 19)	intron (NM_001303104, intron 4 of 19)	6635	NM_001303104	7088		NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1|TLE-1	TLE family member 1, transcriptional corepressor	protein-coding
111937	chr19	4769351	4770050	+	0	NA	promoter-TSS (NR_029607)	promoter-TSS (NR_029607)	595	NR_027148	284424		NM_174947	ENSG00000176840	MIR7-3HG	C19orf30|Huh7|LINC00306|NCRNA00306|PGSF1|uc002mbe.2	MIR7-3 host gene	ncRNA
92210	chr17	7859571	7859930	+	0	NA	3' UTR (NM_001330110, exon 4 of 4)	3' UTR (NM_001330110, exon 4 of 4)	1747	NM_001330110	124637		NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
57779	chr12	123033851	123034430	+	0	NA	intron (NM_001384665, intron 2 of 9)	MLT1A|LTR|ERVL-MaLR	-23412	NR_036187	100422931		NR_036187	ENSG00000265526	MIR4304	-	microRNA 4304	ncRNA
213683	chr7	140082851	140083450	+	0	NA	Intergenic	Intergenic	-20199	NR_130117	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
120889	chr19	45586001	45586200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1298	NM_001017989	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
210998	chr7	102284351	102285080	+	0	NA	promoter-TSS (NM_020979)	promoter-TSS (NM_020979)	-426	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
214350	chr7	149496701	149498280	+	0	NA	intron (NM_152557, intron 1 of 6)	CpG	317	NM_001163474	155061		NM_152557	ENSG00000181220	ZNF746	PARIS	zinc finger protein 746	protein-coding
40608	chr11	64645701	64646350	+	0	NA	intron (NM_015080, intron 17 of 22)	intron (NM_015080, intron 17 of 22)	-2480	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
25081	chr10	3854671	3854830	+	0	NA	Intergenic	AluJb|SINE|Alu	20800	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
21089	chr1	203325071	203325830	+	0	NA	Intergenic	Intergenic	19931	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
194134	chr6	31973971	31974480	+	0	NA	intron (NM_004197, intron 2 of 6)	AluJb|SINE|Alu	1862	NM_004197	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
2166	chr1	8430371	8431400	+	0	NA	intron (NR_125999, intron 3 of 3)	MIRb|SINE|MIR	6240	NR_125999	102724552		NR_125999		RERE-AS1	-	RERE antisense RNA 1	ncRNA
80590	chr16	2906721	2907750	+	0	NA	Intergenic	LTR13|LTR|ERVK	-4696	NM_001308068	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
219570	chr8	79611721	79612380	+	0	NA	intron (NM_001199214, intron 1 of 5)	CpG	933	NM_007029	11075		NM_007029	ENSG00000104435	STMN2	SCG10|SCGN10	stathmin 2	protein-coding
109071	chr18	79915301	79915700	+	0	NA	intron (NM_001146343, intron 3 of 3)	intron (NM_001146343, intron 3 of 3)	36153	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
35425	chr11	1432051	1432150	+	0	NA	intron (NM_001256630, intron 1 of 19)	intron (NM_001256630, intron 1 of 19)	20948	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
72573	chr15	34582071	34583000	+	0	NA	intron (NR_027410, intron 1 of 23)	intron (NR_027410, intron 1 of 23)	1035	NR_027410	440270		NM_001023567	ENSG00000215252	GOLGA8B	GOLGA5	golgin A8 family member B	protein-coding
110148	chr19	1617671	1617830	+	0	NA	intron (NM_003200, intron 16 of 18)	intron (NM_003200, intron 16 of 18)	-12288	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
216773	chr8	22496551	22497050	+	0	NA	intron (NM_005605, intron 3 of 13)	L1MC4a|LINE|L1	-55127	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
35373	chr11	1267421	1267830	+	0	NA	Intergenic	L1MEi|LINE|L1	11020	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
182141	chr5	56269621	56269900	+	0	NA	Intergenic	Intergenic	-36430	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
39759	chr11	61893821	61894400	+	0	NA	Intergenic	L1MB2|LINE|L1	-2565	NM_021727	3995		NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
75215	chr15	64846701	64846900	+	0	NA	intron (NM_001195059, intron 1 of 4)	intron (NM_001195059, intron 1 of 4)	4885	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
236721	chrX	78102171	78102330	+	0	NA	Intergenic	MER51A|LTR|ERV1	-1998	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
130479	chr2	85556971	85557330	+	0	NA	intron (NM_000821, intron 4 of 14)	MIR|SINE|MIR	4343	NM_001311312	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
200477	chr6	135183801	135184400	+	0	NA	intron (NR_134961, intron 1 of 15)	intron (NR_134961, intron 1 of 15)	2792	NM_001161657	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
146882	chr20	51505571	51505730	+	0	NA	intron (NM_173091, intron 3 of 9)	MIRc|SINE|MIR	37069	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
8953	chr1	44354851	44356100	+	0	NA	promoter-TSS (NM_001301701)	promoter-TSS (NM_001301701)	-196	NM_001301700	79033		NM_024066	ENSG00000117419	ERI3	PINT1|PRNPIP	ERI1 exoribonuclease family member 3	protein-coding
33944	chr10	124622721	124623380	+	0	NA	3' UTR (NM_014661, exon 5 of 5)	3' UTR (NM_014661, exon 5 of 5)	-80978	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
158726	chr3	8611771	8612030	+	0	NA	Intergenic	L1PA3|LINE|L1	32898	NR_046358	51066		NM_015931	ENSG00000125046	SSUH2	C3orf32|SSU-2|fls485	ssu-2 homolog	protein-coding
80565	chr16	2845971	2846130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3299	NR_026864	124221		NM_178453	ENSG00000291300	PRSS30P	Disp|TMPRSS8|TMPRSS8P	serine protease 30, pseudogene	pseudo
213784	chr7	140726401	140726600	+	0	NA	exon (NM_001378467, exon 19 of 19)	exon (NM_001378467, exon 19 of 19)	-29423	NR_024454	100134713		NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
56571	chr12	117141521	117141780	+	0	NA	TTS (NR_120464)	TTS (NR_120464)	42183	NR_120464	101928244		NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
83152	chr16	23454421	23454680	+	0	NA	Intergenic	Intergenic	-1361	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
63061	chr13	113150001	113150200	+	0	NA	TTS (NM_001312674)	TTS (NM_001312674)	-8548	NM_003891	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
169945	chr3	179070101	179070300	+	0	NA	promoter-TSS (NM_001375825)	promoter-TSS (NM_001375825)	-858	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
192852	chr6	27174851	27175350	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	27474	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
12542	chr1	108639851	108640730	+	0	NA	TTS (NM_001010883)	TTS (NM_001010883)	20803	NM_001102592	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
211278	chr7	102758221	102758500	+	0	NA	intron (NR_146989, intron 3 of 7)	intron (NR_146989, intron 3 of 7)	9361	NR_146979	222234		NM_147194	ENSG00000222011	FAM185A	-	family with sequence similarity 185 member A	protein-coding
128703	chr2	61658371	61658530	+	0	NA	Intergenic	AluY|SINE|Alu	-120094	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
11146	chr1	86774301	86774500	+	0	NA	Intergenic	Intergenic	69824	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
2355	chr1	9281921	9282580	+	0	NA	Intergenic	Intergenic	-10644	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
125788	chr2	23915201	23915800	+	0	NA	intron (NM_001354107, intron 1 of 28)	AluJb|SINE|Alu	11623	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
14171	chr1	121395451	121397580	+	0	NA	intron (NR_104189, intron 2 of 3)	CpG	1390	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
56620	chr12	118246201	118246550	+	0	NA	intron (NM_001346489, intron 3 of 20)	intron (NM_001346489, intron 3 of 20)	-55840	NM_001346494	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
3579	chr1	16209801	16210300	+	0	NA	intron (NM_153213, intron 1 of 15)	intron (NM_153213, intron 1 of 15)	2602	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
219327	chr8	70187121	70187580	+	0	NA	intron (NM_001321707, intron 4 of 22)	intron (NM_001321707, intron 4 of 22)	-116098	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
188526	chr5	155794801	155795000	+	0	NA	Intergenic	L1MEg|LINE|L1	-532264	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
132475	chr2	105890801	105891550	+	0	NA	intron (NM_001004720, intron 3 of 3)	intron (NM_001004720, intron 3 of 3)	39328	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
219243	chr8	66962451	66963580	+	0	NA	promoter-TSS (NM_001193502)	promoter-TSS (NM_001193502)	-424	NM_001193502	100129654		NM_001193502	ENSG00000261787	TCF24	TCF-24|bHLHa25	transcription factor 24	protein-coding
194616	chr6	33559921	33560180	+	0	NA	Intergenic	MLT1H-int|LTR|ERVL-MaLR	20226	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
224217	chr9	5608451	5609200	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-20282	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
144046	chr20	33653021	33653530	+	0	NA	Intergenic	Intergenic	-9052	NM_080825	128864		NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
197669	chr6	85462301	85462580	+	0	NA	intron (NM_002526, intron 1 of 8)	intron (NM_002526, intron 1 of 8)	12357	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
178863	chr4	154551451	154551550	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1067	NM_001201564	5356		NM_002669	ENSG00000171566	PLRG1	Cwc1|PRL1|PRP46|PRPF46|TANGO4	pleiotropic regulator 1	protein-coding
167491	chr3	129174121	129174580	+	0	NA	intron (NM_001127196, intron 1 of 4)	(A)n|Simple_repeat|Simple_repeat	9546	NM_001127196	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
66435	chr14	61530571	61530930	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	39444	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
14878	chr1	146484101	146484650	+	0	NA	Intergenic	Intergenic	-1957	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
7692	chr1	35932551	35932930	+	0	NA	intron (NM_177422, intron 1 of 16)	intron (NM_177422, intron 1 of 16)	1635	NM_177422	192669		NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
199467	chr6	118273871	118274030	+	0	NA	intron (NM_001029858, intron 4 of 7)	intron (NM_001029858, intron 4 of 7)	188047	NR_134601	105377967		NR_134601		LOC105377967	-	uncharacterized LOC105377967	ncRNA
29132	chr10	68528821	68529400	+	0	NA	Intergenic	Intergenic	-1587	NM_001324317	8034		NM_152707	ENSG00000122912	SLC25A16	D10S105E|GDA|GDC|HGT.1|ML7|hGP|hML7	solute carrier family 25 member 16	protein-coding
167760	chr3	132536001	132536430	+	0	NA	intron (NM_015268, intron 55 of 55)	FRAM|SINE|Alu	-61055	NM_016557	51554		NM_016557	ENSG00000129048	ACKR4	CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding
12054	chr1	98385901	98386300	+	0	NA	Intergenic	MIR|SINE|MIR	175389	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
175597	chr4	75695571	75696600	+	0	NA	Intergenic	Intergenic	-22602	NM_203504	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
141625	chr2	241688401	241688600	+	0	NA	intron (NM_001330161, intron 1 of 7)	intron (NM_001330161, intron 1 of 7)	1480	NM_001330161	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
148428	chr20	63963871	63964600	+	0	NA	intron (NM_020713, intron 7 of 16)	intron (NM_020713, intron 7 of 16)	5695	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
36297	chr11	3830451	3831050	+	0	NA	intron (NM_001665, intron 1 of 1)	intron (NM_001665, intron 1 of 1)	10209	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
205875	chr7	25069921	25070550	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	55025	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
82666	chr16	19558021	19558480	+	0	NA	intron (NR_158160, intron 1 of 28)	MIR|SINE|MIR	2547	NM_001300743	57020		NM_020314	ENSG00000103544	VPS35L	C16orf62|EC97|RTSC3	VPS35 endosomal protein sorting factor like	protein-coding
198006	chr6	90096201	90096980	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	200253	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
222513	chr8	140543651	140543950	+	0	NA	intron (NM_012154, intron 14 of 18)	MIRb|SINE|MIR	31804	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
197580	chr6	79927871	79928030	+	0	NA	intron (NM_022726, intron 1 of 5)	intron (NM_022726, intron 1 of 5)	19603	NM_022726	6785		NM_022726	ENSG00000118402	ELOVL4	ADMD|CT118|ISQMR|SCA34|STGD2|STGD3	ELOVL fatty acid elongase 4	protein-coding
205340	chr7	12681651	12682300	+	0	NA	Intergenic	LTR38|LTR|ERV1	-4852	NM_212460	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
47339	chr12	1819401	1819600	+	0	NA	promoter-TSS (NM_001163925)	promoter-TSS (NM_001163925)	-767	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
38353	chr11	44590671	44591430	+	0	NA	intron (NM_002231, intron 2 of 9)	intron (NM_002231, intron 2 of 9)	25387	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
202778	chr6	159072171	159072630	+	0	NA	Intergenic	Intergenic	-27248	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
154225	chr22	31531371	31531530	+	0	NA	intron (NM_001007467, intron 4 of 32)	LTR31|LTR|ERV1	34914	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
103361	chr17	78114801	78115000	+	0	NA	intron (NM_001375353, intron 18 of 19)	intron (NM_001375353, intron 18 of 19)	13855	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
132562	chr2	106461901	106462180	+	0	NA	intron (NM_001144013, intron 1 of 22)	AluSc|SINE|Alu	6373	NM_001144013	653489		NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2 like and GRIP domain containing 3	protein-coding
41492	chr11	66245621	66245900	+	0	NA	Intergenic	AluSz6|SINE|Alu	-11534	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
232251	chr9	134400471	134401050	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	-5800	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
175411	chr4	70901921	70903180	+	0	NA	exon (NM_001244767, exon 1 of 4)	exon (NM_001244767, exon 1 of 4)	181	NM_173468	92597		NM_173468	ENSG00000173542	MOB1B	MATS2|MOB4A|MOBKL1A	MOB kinase activator 1B	protein-coding
183400	chr5	77810051	77810150	+	0	NA	Intergenic	LTR12|LTR|ERV1	-33739	NM_001297740	6902		NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
145854	chr20	45892851	45893680	+	0	NA	exon (NM_000308, exon 7 of 15)	exon (NM_000308, exon 7 of 15)	1930	NM_000308	5476		NM_000308	ENSG00000064601	CTSA	GLB2|GSL|NGBE|PPCA|PPGB	cathepsin A	protein-coding
13317	chr1	113677951	113678230	+	0	NA	intron (NM_152900, intron 19 of 20)	intron (NM_152900, intron 19 of 20)	81065	NM_006608	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
129395	chr2	68828301	68828500	+	0	NA	Intergenic	Intergenic	42997	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
118651	chr19	37303121	37303430	+	0	NA	Intergenic	Intergenic	-9562	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
79988	chr16	1817601	1818200	+	0	NA	intron (NM_001286249, intron 4 of 7)	intron (NM_001286249, intron 4 of 7)	8925	NM_005326	3029		NM_005326	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
128604	chr2	60998711	60999250	+	0	NA	intron (NM_001322127, intron 4 of 16)	intron (NM_001322127, intron 4 of 16)	18232	NM_001322124	150962		NM_144709	ENSG00000162927	PUS10	CCDC139|DOBI|Hup10	pseudouridine synthase 10	protein-coding
235574	chrX	47482321	47483600	+	0	NA	promoter-TSS (NM_007130)	promoter-TSS (NM_007130)	-14	NM_001324143	7592		NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
187221	chr5	140720071	140720630	+	0	NA	Intergenic	L1MC4|LINE|L1	1424	NR_026704	56663		NR_026704	ENSG00000202111	VTRNA1-2	HVG2|VAULTRC2|VR2|hvg-2	vault RNA 1-2	ncRNA
20611	chr1	198934821	198935750	+	0	NA	intron (NR_040073, intron 1 of 2)	intron (NR_040073, intron 1 of 2)	2144	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
51024	chr12	49745171	49746030	+	0	NA	intron (NM_001098576, intron 1 of 9)	AluSz6|SINE|Alu	3791	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
81464	chr16	8894121	8895030	+	0	NA	exon (NM_001321858, exon 30 of 31)	exon (NM_001321858, exon 30 of 31)	-25563	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
99136	chr17	49290721	49291200	+	0	NA	non-coding (NR_135579, exon 8 of 8)	non-coding (NR_135579, exon 8 of 8)	-2506	NR_106745	102465137		NR_106745	ENSG00000273500	MIR6129	hsa-mir-6129	microRNA 6129	ncRNA
66957	chr14	65877351	65877850	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	406498	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
94827	chr17	31390671	31390830	+	0	NA	promoter-TSS (NM_032932)	promoter-TSS (NM_032932)	-925	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
159182	chr3	12834951	12835930	+	0	NA	TTS (NM_001162499)	TTS (NM_001162499)	5010	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
79239	chr16	386401	387750	+	0	NA	intron (NR_024453, intron 2 of 2)	intron (NR_024453, intron 2 of 2)	4834	NR_024453	100134368		NR_024453	ENSG00000293232	LOC100134368	-	uncharacterized LOC100134368	ncRNA
210966	chr7	101687421	101687680	+	0	NA	Intergenic	Intergenic	-58254	NM_138403	93408		NM_138403	ENSG00000106436	MYL10	MYLC2PL|PLRLC	myosin light chain 10	protein-coding
207986	chr7	55440251	55440350	+	0	NA	Intergenic	Intergenic	74963	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
167517	chr3	129274351	129274650	+	0	NA	intron (NM_016128, intron 21 of 23)	intron (NM_016128, intron 21 of 23)	2354	NR_106884	102465496		NR_106884	ENSG00000278658	MIR6826	hsa-mir-6826	microRNA 6826	ncRNA
128954	chr2	64624071	64624780	+	0	NA	Intergenic	Intergenic	17113	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
196413	chr6	43385371	43385530	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-15803	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
226308	chr9	68895771	68896730	+	0	NA	intron (NM_001278253, intron 7 of 13)	intron (NM_001278253, intron 7 of 13)	79591	NR_110647	101927069		NR_110647		LOC101927069	-	uncharacterized LOC101927069	ncRNA
124014	chr19	55472451	55472750	+	0	NA	Intergenic	Intergenic	-4017	NM_033113	89887		NM_033113	ENSG00000197483	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
118901	chr19	38700471	38700630	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	43924	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
122885	chr19	50512521	50512850	+	0	NA	exon (NM_001114598, exon 4 of 7)	exon (NM_001114598, exon 4 of 7)	1228	NM_001114598	554235		NM_001024656	ENSG00000204653	ASPDH	-	aspartate dehydrogenase domain containing	protein-coding
120253	chr19	42425601	42426200	+	0	NA	intron (NR_073179, intron 1 of 1)	AluSg7|SINE|Alu	1488	NM_005357	3991		NM_005357	ENSG00000079435	LIPE	AOMS4|FPLD6|HSL|LHS|REH	lipase E, hormone sensitive type	protein-coding
6940	chr1	31740421	31740880	+	0	NA	intron (NM_001294336, intron 11 of 31)	intron (NM_001294336, intron 11 of 31)	18085	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
195629	chr6	37826101	37826730	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	6688	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
2536	chr1	9723521	9723780	+	0	NA	intron (NM_001350234, intron 20 of 23)	MLT1H|LTR|ERVL-MaLR	32183	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
169358	chr3	160407371	160408030	+	0	NA	intron (NM_005496, intron 4 of 22)	intron (NM_005496, intron 4 of 22)	2955	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
112235	chr19	5715401	5716050	+	0	NA	intron (NM_001276480, intron 1 of 17)	AluSx|SINE|Alu	4421	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
239091	chrY	10466621	10467230	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	556127	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
188722	chr5	157350951	157351680	+	0	NA	intron (NM_014376, intron 23 of 30)	intron (NM_014376, intron 23 of 30)	-5638	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
45293	chr11	118059071	118059230	+	0	NA	exon (NM_001354434, exon 2 of 6)	exon (NM_001354434, exon 2 of 6)	-17862	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
227278	chr9	89382071	89382650	+	0	NA	intron (NM_001371200, intron 15 of 20)	intron (NM_001371200, intron 15 of 20)	63509	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
64515	chr14	24397751	24398230	+	0	NA	Intergenic	Intergenic	-1013	NM_025081	57523		NM_025081	ENSG00000205978	NYNRIN	CGIN1|KIAA1305	NYN domain and retroviral integrase containing	protein-coding
31673	chr10	97431771	97432250	+	0	NA	intron (NM_001317079, intron 3 of 3)	intron (NM_001317079, intron 3 of 3)	4333	NM_001317079	5223		NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
231438	chr9	131254851	131254950	+	0	NA	Intergenic	Intergenic	21610	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
238635	chrX	153966251	153966350	+	0	NA	intron (NM_005334, intron 1 of 25)	intron (NM_005334, intron 1 of 25)	-2465	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
130497	chr2	85587421	85587880	+	0	NA	intron (NM_006634, intron 1 of 2)	MIR|SINE|MIR	3219	NM_006634	10791		NM_006634	ENSG00000168899	VAMP5	-	vesicle associated membrane protein 5	protein-coding
12746	chr1	109602771	109603530	+	0	NA	TTS (NM_005272)	TTS (NM_005272)	4257	NR_029583	406974		NR_029583	ENSG00000284443	MIR197	MIRN197|miR-197|miRNA197	microRNA 197	ncRNA
200499	chr6	135531901	135532300	+	0	NA	intron (NR_152845, intron 2 of 4)	intron (NR_152845, intron 2 of 4)	34299	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
146707	chr20	50569921	50570680	+	0	NA	intron (NM_002827, intron 4 of 9)	intron (NM_002827, intron 4 of 9)	-15486	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
49197	chr12	15843651	15843750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-38687	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
42345	chr11	68508471	68509180	+	0	NA	intron (NR_147971, intron 2 of 24)	intron (NR_147971, intron 2 of 24)	48073	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
414	chr1	1076801	1077430	+	0	NA	Intergenic	CpG	-2809	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
165720	chr3	102673551	102673850	+	0	NA	Intergenic	Intergenic	238685	NM_175056	131368		NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida like domain containing 1	protein-coding
21955	chr1	208021751	208022100	+	0	NA	TTS (NM_025179)	TTS (NM_025179)	62934	NR_167983	105372883		NR_167982		LINC02767	-	long intergenic non-protein coding RNA 2767	ncRNA
2704	chr1	10644321	10645800	+	0	NA	exon (NM_001079843, exon 18 of 21)	exon (NM_001079843, exon 18 of 21)	151586	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
185261	chr5	123549151	123550130	+	0	NA	intron (NM_001364150, intron 2 of 11)	MER74B|LTR|ERVL	4223	NM_001044723	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
132766	chr2	109801251	109801550	+	0	NA	intron (NM_001384364, intron 1 of 22).2	AluSx1|SINE|Alu	6791	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
15005	chr1	148153701	148153900	+	0	NA	Intergenic	AluJb|SINE|Alu	-1519	NM_001385471	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
6338	chr1	27720671	27721380	+	0	NA	Intergenic	L2b|LINE|L2	-4936	NM_001143914	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
101735	chr17	69358771	69358930	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-31717	NM_172232	23461		NM_018672	ENSG00000154265	ABCA5	ABC13|EST90625|HTC3	ATP binding cassette subfamily A member 5	protein-coding
155031	chr22	37473551	37474080	+	0	NA	intron (NR_029413, intron 5 of 6)	MLT1K|LTR|ERVL-MaLR	12569	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
21437	chr1	205437001	205437430	+	0	NA	non-coding (NR_103783, exon 2 of 2)	non-coding (NR_103783, exon 2 of 2)	11183	NR_029893	442891		NR_029893	ENSG00000199059	MIR135B	MIRN135B|mir-135b	microRNA 135b	ncRNA
179455	chr4	184438101	184438500	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	36250	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
83911	chr16	29007651	29008450	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	22998	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
187433	chr5	142065271	142065430	+	0	NA	Intergenic	Intergenic	-43429	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
204336	chr7	2760301	2760950	+	0	NA	intron (NM_001282441, intron 3 of 4)	intron (NM_001282441, intron 3 of 4)	2515	NM_001282440	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
192919	chr6	27684171	27684850	+	0	NA	Intergenic	Intergenic	-9525	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
155304	chr22	38182801	38183080	+	0	NA	Intergenic	MIRb|SINE|MIR	-1110	NM_001349866	8398		NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
5523	chr1	25799771	25801130	+	0	NA	intron (NM_206926, intron 1 of 11)	CpG	257	NM_020451	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
9375	chr1	47239171	47239530	+	0	NA	Intergenic	Intergenic	-7015	NM_001290403	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
56737	chr12	120130101	120130300	+	0	NA	intron (NM_006836, intron 56 of 57)	intron (NM_006836, intron 56 of 57)	-13447	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
162332	chr3	47580421	47580680	+	0	NA	promoter-TSS (NM_001206942)	promoter-TSS (NM_001206942)	-310	NM_001206945	10675		NM_006574	ENSG00000114646	CSPG5	NGC	chondroitin sulfate proteoglycan 5	protein-coding
174362	chr4	38837701	38838330	+	0	NA	intron (NM_006068, intron 1 of 1)	L1MA4|LINE|L1	18802	NM_006068	10333		NM_006068	ENSG00000174130	TLR6	CD286	toll like receptor 6	protein-coding
130836	chr2	87128501	87128900	+	0	NA	Intergenic	Intergenic	-52287	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
3044	chr1	12152001	12152530	+	0	NA	Intergenic	Intergenic	-14678	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
98459	chr17	47096771	47096930	+	0	NA	Intergenic	AluSx|SINE|Alu	92445	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
131109	chr2	90237971	90238300	+	0	NA	Intergenic	CpG	-600228	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
201107	chr6	142853951	142855030	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	90686	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
164578	chr3	64030521	64031000	+	0	NA	Intergenic	Intergenic	-6750	NM_001271780	9861		NM_014814	ENSG00000163636	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	proteasome 26S subunit, non-ATPase 6	protein-coding
145030	chr20	38076571	38077130	+	0	NA	intron (NM_021215, intron 6 of 6)	intron (NM_021215, intron 6 of 6)	43104	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
119403	chr19	40249271	40249430	+	0	NA	intron (NM_001243027, intron 4 of 13)	intron (NM_001243027, intron 4 of 13)	16001	NM_001330511	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
130511	chr2	85600251	85600550	+	0	NA	exon (NM_001031738, exon 5 of 8)	exon (NM_001031738, exon 5 of 8)	1994	NM_001369917	129303		NM_153342	ENSG00000168890	TMEM150A	TM6P1|TMEM150|TTN1	transmembrane protein 150A	protein-coding
214801	chr7	151174001	151174330	+	0	NA	Intergenic	L2b|LINE|L2	-6617	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
224854	chr9	29211971	29212530	+	0	NA	promoter-TSS (NM_001354575)	promoter-TSS (NM_001354575)	49	NM_001354575	158038		NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
69483	chr14	95472771	95473330	+	0	NA	intron (NM_001384284, intron 2 of 8)	intron (NM_001384284, intron 2 of 8)	27490	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
233906	chrX	1608871	1609030	+	0	NA	intron (NM_004043, intron 1 of 9)	intron (NM_004043, intron 1 of 9)	-6109	NM_001171038	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
132798	chr2	110267851	110268180	+	0	NA	Intergenic	LTR13|LTR|ERVK	-16838	NR_039941	100616123		NR_039941	ENSG00000264979	MIR4436B1	MIR4436B|hsa-mir-4436b-1	microRNA 4436b-1	ncRNA
190915	chr6	2848501	2849500	+	0	NA	Intergenic	Intergenic	5107	NR_039788	100616285		NR_039788	ENSG00000266750	MIR4645	mir-4645	microRNA 4645	ncRNA
105594	chr18	616451	616590	+	0	NA	promoter-TSS (NM_001318522)	promoter-TSS (NM_001318522)	-152	NM_001318522	27098		NM_014410	ENSG00000079101	CLUL1	RA337M	clusterin like 1	protein-coding
46668	chr11	128720201	128721450	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-24802	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
20319	chr1	197519671	197519900	+	0	NA	intron (NR_125340, intron 17 of 19)	L2b|LINE|L2	251533	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
94446	chr17	29219351	29219750	+	0	NA	Intergenic	Intergenic	-27309	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
49029	chr12	14370321	14370600	+	0	NA	intron (NM_001286515, intron 1 of 12)	intron (NM_001286515, intron 1 of 12)	4778	NM_001286515	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
189186	chr5	171416421	171416850	+	0	NA	Intergenic	L1ME1|LINE|L1	-3012	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
95479	chr17	36205721	36205980	+	0	NA	Intergenic	Intergenic	-5058	NM_207007	388372		NM_207007		CCL4L1	AT744.2|CCL4L|LAG-1|LAG1|MIP-1-beta|SCYA4L|SCYA4L1|SCYA4L2	C-C motif chemokine ligand 4 like 1	protein-coding
91471	chr17	4885671	4886030	+	0	NA	intron (NM_015716, intron 7 of 30)	intron (NM_015716, intron 7 of 30)	-13686	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
133150	chr2	112685271	112686430	+	0	NA	Intergenic	AluJo|SINE|Alu	-35636	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
226645	chr9	74499301	74499600	+	0	NA	promoter-TSS (NR_125791)	promoter-TSS (NR_125791)	-897	NR_125791	103752585		NR_125791		RORB-AS1	-	RORB antisense RNA 1	ncRNA
127937	chr2	46534551	46534900	+	0	NA	intron (NM_001371282, intron 3 of 4)	L1MEc|LINE|L1	-7765	NM_012249	23433		NM_012249	ENSG00000119729	RHOQ	ARHQ|HEL-S-42|RASL7A|TC10|TC10A	ras homolog family member Q	protein-coding
233656	chrX	1010221	1010680	+	0	NA	Intergenic	AluSx|SINE|Alu	202199	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
231867	chr9	132946401	132946600	+	0	NA	TTS (NR_049862)	TTS (NR_049862)	793	NR_049862	100846992		NR_049862	ENSG00000263816	MIR548AW	-	microRNA 548aw	ncRNA
101869	chr17	74275701	74276080	+	0	NA	intron (NM_001172810, intron 1 of 13)	AluSc8|SINE|Alu	1656	NM_023036	64446		NM_023036	ENSG00000171595	DNAI2	CILD9|DIC2|oda6	dynein axonemal intermediate chain 2	protein-coding
208131	chr7	61843471	61843730	+	0	NA	Intergenic	L1HS|LINE|L1	1460456	NR_003952	643955		NR_003952	ENSG00000290558	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
222132	chr8	132140671	132140830	+	0	NA	intron (NM_004519, intron 10 of 14)	intron (NM_004519, intron 10 of 14)	-35485	NM_001145095	10086		NM_005712	ENSG00000132297	HHLA1	PLA2L	HHLA1 neighbor of OC90	protein-coding
193493	chr6	30554071	30554450	+	0	NA	intron (NM_005275, intron 5 of 11)	intron (NM_005275, intron 5 of 11)	-2449	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
63303	chr13	113989951	113990050	+	0	NA	intron (NM_001320822, intron 22 of 23).2	MSTA|LTR|ERVL-MaLR	-15924	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
37942	chr11	34354571	34355100	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	3175	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
110239	chr19	1777221	1777680	+	0	NA	3' UTR (NM_001080488, exon 2 of 2)	3' UTR (NM_001080488, exon 2 of 2)	23944	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
86505	chr16	67055601	67056200	+	0	NA	intron (NM_001368708, intron 3 of 4)	intron (NM_001368708, intron 3 of 4)	26751	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
225046	chr9	33163321	33163580	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-3498	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
145217	chr20	38910551	38910650	+	0	NA	intron (NM_001172735, intron 9 of 9)	AluJo|SINE|Alu	-15817	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
24442	chr1	243719721	243719800	+	0	NA	intron (NM_005465, intron 2 of 13)	MLT1J1|LTR|ERVL-MaLR	123522	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
229158	chr9	114496451	114496750	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	6615	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
202495	chr6	158323201	158323400	+	0	NA	TTS (NR_145798)	TTS (NR_145798)	318	NR_145798	109623462		NR_145798		SNORA116	-	small nucleolar RNA, H/ACA box 116	snoRNA
61855	chr13	76994021	76994530	+	0	NA	intron (NM_006493, intron 1 of 3)	intron (NM_006493, intron 1 of 3)	2194	NM_006493	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
158522	chr3	3169921	3170180	+	0	NA	intron (NM_016302, intron 4 of 10)	AluSz|SINE|Alu	9641	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
175579	chr4	75657671	75658430	+	0	NA	intron (NM_203505, intron 3 of 11)	intron (NM_203505, intron 3 of 11)	15109	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
169671	chr3	171704071	171704230	+	0	NA	intron (NM_001130081, intron 11 of 25)	L1MD2|LINE|L1	106333	NM_001130081	5337		NM_002662	ENSG00000075651	PLD1	CVDD|CVDP1	phospholipase D1	protein-coding
103848	chr17	79707371	79707880	+	0	NA	promoter-TSS (NR_039893)	promoter-TSS (NR_039893)	359	NR_109783	100652929		NR_109783	ENSG00000267719	LINC02078	HP09025	long intergenic non-protein coding RNA 2078	ncRNA
87154	chr16	69313571	69314330	+	0	NA	intron (NM_013245, intron 1 of 10)	L3|LINE|CR1	2600	NM_013245	27183		NM_013245	ENSG00000132612	VPS4A	CIMDAG|SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
10394	chr1	65062451	65062830	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	-4132	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1|mir-101-1	microRNA 101-1	ncRNA
46377	chr11	126266971	126267130	+	0	NA	intron (NM_001177842, intron 3 of 12)	intron (NM_001177842, intron 3 of 12)	1845	NM_003139	6734		NM_003139	ENSG00000182934	SRPRA	DP|SRPR|Sralpha	SRP receptor subunit alpha	protein-coding
214665	chr7	150937671	150938550	+	0	NA	Intergenic	Intergenic	17694	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
47631	chr12	6194051	6194150	+	0	NA	Intergenic	Intergenic	-5846	NM_001330312	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
18682	chr1	167273151	167273550	+	0	NA	intron (NM_001365848, intron 2 of 17)	MSTA-int|LTR|ERVL-MaLR	52464	NM_002697	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
135895	chr2	171162651	171162750	+	0	NA	intron (NM_001136554, intron 1 of 20)	L1ME1|LINE|L1	-1807	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
186928	chr5	139632801	139634000	+	0	NA	Intergenic	Intergenic	-13899	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
232314	chr9	134693101	134693300	+	0	NA	intron (NM_001278074, intron 2 of 65)	intron (NM_001278074, intron 2 of 65)	-40357	NR_138049	414316		NR_138049		COL5A1-AS1	C9orf104|bA54A22.4	COL5A1 antisense RNA 1	ncRNA
180190	chr5	1487751	1488050	+	0	NA	intron (NM_024830, intron 5 of 13)	intron (NM_024830, intron 5 of 13)	22956	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
36464	chr11	5818521	5818950	+	0	NA	Intergenic	Intergenic	-1601	NM_001005174	390077		NM_001005174	ENSG00000180988	OR52N2	OR11-57	olfactory receptor family 52 subfamily N member 2	protein-coding
4535	chr1	21936971	21938550	+	0	NA	promoter-TSS (NM_005529)	promoter-TSS (NM_005529)	-450	NM_001291860	3339		NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
109893	chr19	1270971	1271150	+	0	NA	promoter-TSS (NR_027271)	promoter-TSS (NR_027271)	-800	NR_027271	148046		NM_152480	ENSG00000267493	CIRBP-AS1	C19orf23	CIRBP antisense RNA 1	ncRNA
95600	chr17	37488071	37488430	+	0	NA	Intergenic	Intergenic	-1641	NM_007026	11072		NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
73740	chr15	45215551	45215650	+	0	NA	Intergenic	Intergenic	-14484	NM_138356	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
41990	chr11	67385121	67385380	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-6736	NM_004584	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
163152	chr3	50153101	50153600	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-1708	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
46179	chr11	123235071	123235290	+	0	NA	Intergenic	Intergenic	-39932	NM_024769	79827		NM_024769	ENSG00000166250	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR like membrane protein	protein-coding
159205	chr3	12885301	12885500	+	0	NA	promoter-TSS (NR_136189)	promoter-TSS (NR_136189)	-189	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
33983	chr10	124665171	124665530	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-38678	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
102383	chr17	75574051	75575030	+	0	NA	intron (NM_001031803, intron 24 of 25)	intron (NM_001031803, intron 24 of 25)	-13518	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
142118	chr20	2673921	2674380	+	0	NA	Intergenic	AluSg|SINE|Alu	-9927	NM_001258384	3420		NM_006899	ENSG00000101365	IDH3B	RP46	isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta	protein-coding
67123	chr14	68508951	68509250	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	119687	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
197856	chr6	89032701	89032900	+	0	NA	Intergenic	L1ME3G|LINE|L1	-47951	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
173864	chr4	23647151	23647250	+	0	NA	Intergenic	L1PA3|LINE|L1	234092	NM_001330753	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
93006	chr17	17203851	17204580	+	0	NA	intron (NM_178836, intron 1 of 1)	intron (NM_178836, intron 1 of 1)	2118	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
114231	chr19	11483851	11484430	+	0	NA	exon (NM_138783, exon 8 of 9)	exon (NM_138783, exon 8 of 9)	-3094	NM_001420	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
123704	chr19	55026601	55028700	+	0	NA	exon (NM_001256017, exon 4 of 7).2	exon (NM_001256017, exon 4 of 7).2	10614	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
8759	chr1	42725151	42725650	+	0	NA	Intergenic	AluSq2|SINE|Alu	14836	NM_148960	149461		NM_148960	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
113751	chr19	10500351	10500680	+	0	NA	intron (NM_203500, intron 1 of 5)	L2a|LINE|L2	2256	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
216218	chr8	11968001	11968400	+	0	NA	Intergenic	Intergenic	6399	NM_001033018	613210		NM_001033018	ENSG00000205884	DEFB136	DEFB137	defensin beta 136	protein-coding
41965	chr11	67352671	67354050	+	0	NA	non-coding (NR_046411, exon 1 of 4)	non-coding (NR_046411, exon 1 of 4)	186	NM_021173	57804		NM_021173	ENSG00000175482	POLD4	POLDS|p12	DNA polymerase delta 4, accessory subunit	protein-coding
48793	chr12	11813301	11813500	+	0	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	163726	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
100085	chr17	58309171	58309330	+	0	NA	exon (NM_024418, exon 21 of 31)	exon (NM_024418, exon 21 of 31)	-16200	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
117065	chr19	19035501	19035700	+	0	NA	intron (NM_001199196, intron 2 of 8)	intron (NM_001199196, intron 2 of 8)	-1756	NM_001352071	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
14677	chr1	145825901	145826500	+	0	NA	intron (NM_006468, intron 2 of 14)	intron (NM_006468, intron 2 of 14)	1755	NM_001303456	10623		NM_006468	ENSG00000186141	POLR3C	C82|RPC3|RPC62	RNA polymerase III subunit C	protein-coding
53439	chr12	65171771	65172650	+	0	NA	intron (NM_001167614, intron 1 of 12)	intron (NM_001167614, intron 1 of 12)	2627	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
14368	chr1	144103321	144105000	+	0	NA	Intergenic	(TGGCTGGCT)n|Simple_repeat|Simple_repeat	-130641	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
191473	chr6	11124601	11124800	+	0	NA	intron (NM_001135575, intron 1 of 1)	L1MA3|LINE|L1	-12975	NM_207582	405754		NM_207582	ENSG00000244476	ERVFRD-1	ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD	endogenous retrovirus group FRD member 1, envelope	protein-coding
123953	chr19	55395321	55395650	+	0	NA	intron (NM_001363697, intron 4 of 4)	AluY|SINE|Alu	7172	NR_145781	109623451		NR_145781		SNORD157	-	small nucleolar RNA, C/D box 157	snoRNA
140893	chr2	237672801	237674270	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-18629	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
67788	chr14	73756301	73756950	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-2122	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
214307	chr7	149197651	149198430	+	0	NA	intron (NM_001303481, intron 1 of 8)	intron (NM_001303481, intron 1 of 8)	2494	NM_001303481	8427		NM_003575	ENSG00000170265	ZNF282	HUB1	zinc finger protein 282	protein-coding
97358	chr17	43299371	43300880	+	0	NA	TTS (NR_002716).10	TTS (NR_002716).10	106	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
137598	chr2	197287151	197288150	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	14869	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
99225	chr17	49596721	49596980	+	0	NA	Intergenic	Intergenic	20979	NM_007225	11248		NM_007225	ENSG00000182575	NXPH3	NPH3	neurexophilin 3	protein-coding
199448	chr6	117550721	117551080	+	0	NA	intron (NM_173674, intron 14 of 14)	intron (NM_173674, intron 14 of 14)	51611	NM_001017408	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
81297	chr16	4683921	4684180	+	0	NA	intron (NM_001142289, intron 15 of 15)	intron (NM_001142289, intron 15 of 15)	-9643	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
152433	chr22	20586051	20586730	+	0	NA	intron (NM_001003891, intron 17 of 17)	intron (NM_001003891, intron 17 of 17)	78343	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
23002	chr1	226124101	226124700	+	0	NA	Intergenic	MER51B|LTR|ERV1	-23603	NR_146443	107985353		NR_146443	ENSG00000234478	ACBD3-AS1	-	ACBD3 antisense RNA 1	ncRNA
225373	chr9	34987551	34987850	+	0	NA	intron (NR_109756, intron 1 of 1)	intron (NR_109756, intron 1 of 1)	1679	NR_109756	101926900		NR_109756	ENSG00000281491	DNAJB5-DT	DNAJB5-AS1	DNAJB5 divergent transcript	ncRNA
210809	chr7	100872451	100872950	+	0	NA	exon (NM_003302, exon 8 of 9)	exon (NM_003302, exon 8 of 9)	-2403	NM_001128854	51593		NM_015908	ENSG00000087087	SRRT	ARS2|ASR2|serrate	serrate, RNA effector molecule	protein-coding
5873	chr1	26771321	26771850	+	0	NA	intron (NM_139135, intron 12 of 19)	intron (NM_139135, intron 12 of 19)	-15469	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
123603	chr19	54495271	54495550	+	0	NA	Intergenic	Intergenic	-7421	NM_002288	3904		NM_002288	ENSG00000167618	LAIR2	CD306	leukocyte associated immunoglobulin like receptor 2	protein-coding
71633	chr14	106738171	106738850	+	0	NA	Intergenic	Intergenic	112489	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
20117	chr1	192517871	192518200	+	0	NA	Intergenic	MamTip3|DNA|hAT-Tip100	-57738	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
94628	chr17	29931261	29932150	+	0	NA	intron (NM_001145053, intron 1 of 14)	intron (NM_001145053, intron 1 of 14)	-1477	NM_001282129	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
72605	chr15	36878201	36878680	+	0	NA	intron (NR_024264, intron 4 of 6)	intron (NR_024264, intron 4 of 6)	8093	NR_024264	145845		NM_001101327		LOC145845	-	uncharacterized LOC145845	ncRNA
188895	chr5	160007701	160007930	+	0	NA	Intergenic	AluJr|SINE|Alu	-1285	NM_001282500	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
17933	chr1	160294221	160294750	+	0	NA	exon (NM_004371, exon 25 of 33)	exon (NM_004371, exon 25 of 33)	-9334	NR_036492	5824		NM_002857	ENSG00000162735	PEX19	D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1	peroxisomal biogenesis factor 19	protein-coding
211136	chr7	102540251	102540430	+	0	NA	intron (NM_001097615, intron 6 of 8)	MIRb|SINE|MIR	4448	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
231361	chr9	130659471	130660180	+	0	NA	Intergenic	CpG	-4769	NM_021619	59335		NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding
149085	chr21	15776851	15777300	+	0	NA	intron (NM_001352561, intron 3 of 23)	intron (NM_001352561, intron 3 of 23)	47093	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
111630	chr19	4128251	4128750	+	0	NA	Intergenic	AluY|SINE|Alu	-4378	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
221911	chr8	128858871	128859370	+	0	NA	Intergenic	Intergenic	106881	NR_145483	106144608		NR_145483	ENSG00000229140	LINC00976	-	long intergenic non-protein coding RNA 976	ncRNA
135722	chr2	169360001	169360200	+	0	NA	intron (NM_004525, intron 1 of 78)	AluSz6|SINE|Alu	2434	NM_004525	4036		NM_004525	ENSG00000081479	LRP2	DBS|GP330|LRP-2	LDL receptor related protein 2	protein-coding
9327	chr1	46581101	46581950	+	0	NA	intron (NR_146512, intron 3 of 11)	AluSc|SINE|Alu	22743	NM_001377337	8569		NM_003684	ENSG00000079277	MKNK1	MNK1	MAPK interacting serine/threonine kinase 1	protein-coding
97196	chr17	42688971	42689530	+	0	NA	intron (NM_003632, intron 10 of 23)	intron (NM_003632, intron 10 of 23)	6719	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
88030	chr16	81261071	81261300	+	0	NA	intron (NM_017429, intron 3 of 10)	intron (NM_017429, intron 3 of 10)	22496	NM_017429	53630		NM_017429	ENSG00000135697	BCO1	BCDO|BCDO1|BCMO|BCMO1|BCO	beta-carotene oxygenase 1	protein-coding
153626	chr22	28679121	28680230	+	0	NA	exon (NM_001145418, exon 1 of 23)	exon (NM_001145418, exon 1 of 23)	190	NM_001145418	23331		NM_015281	ENSG00000100154	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
54221	chr12	79927801	79929400	+	0	NA	intron (NM_001143885, intron 2 of 25)	intron (NM_001143885, intron 2 of 25)	6351	NM_001244992	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
29676	chr10	72043471	72043850	+	0	NA	Intergenic	MIRc|SINE|MIR	44891	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
113939	chr19	10746551	10747200	+	0	NA	intron (NM_001005362, intron 1 of 19)	AluSx1|SINE|Alu	28471	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
218684	chr8	58395271	58396000	+	0	NA	Intergenic	Intergenic	-15629	NM_001330535	137886		NM_001077619	ENSG00000215114	UBXN2B	p37	UBX domain protein 2B	protein-coding
134519	chr2	143452671	143453350	+	0	NA	intron (NM_018460, intron 8 of 13)	intron (NM_018460, intron 8 of 13)	323591	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
26658	chr10	22600721	22602750	+	0	NA	intron (NM_001330062, intron 3 of 9)	intron (NM_001330062, intron 3 of 9)	112373	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
204517	chr7	4794871	4795030	+	0	NA	TTS (NM_001364858)	TTS (NM_001364858)	-6311	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
3390	chr1	15733201	15733800	+	0	NA	intron (NM_015164, intron 19 of 19)	intron (NM_015164, intron 19 of 19)	-2758	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
77299	chr15	82346301	82346500	+	0	NA	intron (NM_001164465, intron 4 of 8)	intron (NM_001164465, intron 4 of 8)	3075	NM_001164465	647042		NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family like 10	protein-coding
137566	chr2	197249851	197250550	+	0	NA	TTS (NR_046837)	TTS (NR_046837)	52209	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
76762	chr15	76976601	76976800	+	0	NA	Intergenic	L2b|LINE|L2	-17980	NM_001321137	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
175546	chr4	75127071	75127250	+	0	NA	Intergenic	L1PA2|LINE|L1	-42452	NR_149051	105377283		NR_149051		LINC02562	-	long intergenic non-protein coding RNA 2562	ncRNA
132284	chr2	104976801	104977000	+	0	NA	intron (NR_110603, intron 1 of 2)	LTR50|LTR|ERVL	-61169	NM_182640	64965		NM_182640	ENSG00000135972	MRPS9	MRP-S9|RPMS9|S9mt|uS9m	mitochondrial ribosomal protein S9	protein-coding
68665	chr14	90265451	90265550	+	0	NA	intron (NM_002802, intron 7 of 10)	AluSx4|SINE|Alu	7561	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
164986	chr3	71316451	71316950	+	0	NA	intron (NM_001349340, intron 3 of 19)	AluSc8|SINE|Alu	-11929	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
211614	chr7	105896301	105896700	+	0	NA	Intergenic	L1ME3B|LINE|L1	-19901	NM_001385596	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
10024	chr1	55536571	55536730	+	0	NA	Intergenic	(AGCTC)n|Simple_repeat|Simple_repeat	311009	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA
166824	chr3	122791371	122792150	+	0	NA	intron (NM_024610, intron 1 of 7)	L2a|LINE|L2	2071	NM_024610	79663		NM_024610	ENSG00000169087	HSPBAP1	PASS1	HSPB1 associated protein 1	protein-coding
70506	chr14	102205551	102205850	+	0	NA	intron (NM_001242415, intron 3 of 3)	intron (NM_001242415, intron 3 of 3)	29726	NM_001353832	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
80079	chr16	1995951	1996600	+	0	NA	Intergenic	MIR|SINE|MIR	6305	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
40807	chr11	64911871	64912500	+	0	NA	exon (NM_001367972, exon 8 of 41)	exon (NM_001367972, exon 8 of 41)	5024	NM_001367972	23130		NM_015104	ENSG00000110046	ATG2A	BLTP4A	autophagy related 2A	protein-coding
212805	chr7	130365671	130366150	+	0	NA	intron (NR_133928, intron 1 of 1)	intron (NR_133928, intron 1 of 1)	1217	NR_133928	105375504		NR_133928		LOC105375504	-	uncharacterized LOC105375504	ncRNA
228981	chr9	113548051	113548350	+	0	NA	intron (NM_001276261, intron 10 of 14)	intron (NM_001276261, intron 10 of 14)	11589	NM_001276260	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
116388	chr19	17950021	17951070	+	0	NA	promoter-TSS (NM_002248)	promoter-TSS (NM_002248)	-757	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
144097	chr20	33793151	33793480	+	0	NA	intron (NR_110623, intron 3 of 3)	intron (NR_110623, intron 3 of 3)	17784	NR_110623	101929746		NR_110623	ENSG00000230753	ZNF341-AS1	-	ZNF341 antisense RNA 1	ncRNA
202982	chr6	161372321	161372780	+	0	NA	intron (NM_013987, intron 9 of 10)	L2a|LINE|L2	-98427	NR_134593	105378098		NR_134593		LOC105378098	-	uncharacterized LOC105378098	ncRNA
161056	chr3	38026701	38026900	+	0	NA	intron (NM_006225, intron 1 of 14)	intron (NM_006225, intron 1 of 14)	-2280	NR_024071	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
225079	chr9	33295771	33295930	+	0	NA	intron (NM_147134, intron 2 of 15)	L2b|LINE|L2	5334	NM_147134	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
110167	chr19	1652301	1653830	+	0	NA	promoter-TSS (NM_001351778)	promoter-TSS (NM_001351778)	-450	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
165173	chr3	72405871	72406230	+	0	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	40573	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
64134	chr14	22868721	22868980	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2890	NM_014045	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
237189	chrX	107740801	107741030	+	0	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	-23853	NM_004089	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
107187	chr18	35606101	35606300	+	0	NA	intron (NM_001384444, intron 1 of 11)	MLT1I|LTR|ERVL-MaLR	14463	NR_039771	100616257		NR_039771	ENSG00000283514	MIR3975	-	microRNA 3975	ncRNA
170426	chr3	185635471	185635630	+	0	NA	Intergenic	MER44D|DNA|TcMar-Tigger	49255	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
183457	chr5	79235271	79238050	+	0	NA	exon (NM_152405, exon 1 of 11)	exon (NM_152405, exon 1 of 11)	529	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
35863	chr11	2379911	2380350	+	0	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-2138	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
202213	chr6	156794301	156794500	+	0	NA	intron (NM_001371656, intron 2 of 20)	AluJr|SINE|Alu	-14669	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
68690	chr14	90400501	90400700	+	0	NA	intron (NM_006888, intron 2 of 5)	AluJo|SINE|Alu	2350	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
238552	chrX	153782601	153783000	+	0	NA	exon (NM_001170761, exon 6 of 16)	exon (NM_001170761, exon 6 of 16)	1759	NM_001170760	26576		NM_014370	ENSG00000184343	SRPK3	MSSK-1|MSSK1|STK23	SRSF protein kinase 3	protein-coding
223352	chr8	143859071	143859230	+	0	NA	exon (NM_031308, exon 2 of 2)	exon (NM_031308, exon 2 of 2)	-18177	NM_178564	340371		NM_178564	ENSG00000185189	NRBP2	TRG16|pp9320	nuclear receptor binding protein 2	protein-coding
230206	chr9	127818001	127818200	+	0	NA	intron (NR_136302, intron 2 of 5)	intron (NR_136302, intron 2 of 5)	2034	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
99672	chr17	50730051	50730980	+	0	NA	intron (NM_001330330, intron 1 of 10)	AluSz6|SINE|Alu	10912	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
148872	chr21	8440201	8440800	+	0	NA	promoter-TSS (NR_003287).4	promoter-TSS (NR_003287).4	-646	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
50146	chr12	45734021	45734600	+	0	NA	intron (NM_152641, intron 3 of 20)	AluSx|SINE|Alu	4601	NM_001347839	196528		NM_152641	ENSG00000189079	ARID2	BAF200|CSS6|SMARCF3|ZIPZAP|p200	AT-rich interaction domain 2	protein-coding
27192	chr10	28563721	28564350	+	0	NA	intron (NM_100486, intron 3 of 12)	AluJb|SINE|Alu	30917	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
138261	chr2	203327721	203329330	+	0	NA	exon (NM_001375704, exon 1 of 11)	exon (NM_001375704, exon 1 of 11)	131	NM_001375721	10152		NM_005759	ENSG00000138443	ABI2	ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB	abl interactor 2	protein-coding
204760	chr7	5597821	5598080	+	0	NA	intron (NM_003088, intron 1 of 4)	intron (NM_003088, intron 1 of 4)	5134	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
218783	chr8	58993021	58993280	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	125997	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
49399	chr12	22532971	22533730	+	0	NA	intron (NM_001385330, intron 2 of 23)	MIRb|SINE|MIR	10847	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
215708	chr8	1476401	1476800	+	0	NA	intron (NM_001346810, intron 3 of 14)	intron (NM_001346810, intron 3 of 14)	145064	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
71354	chr14	105470671	105471980	+	0	NA	TTS (NM_004689)	TTS (NM_004689)	-1620	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
132330	chr2	105403951	105404050	+	0	NA	intron (NM_001374399, intron 1 of 6)	intron (NM_001374399, intron 1 of 6)	-4333	NM_001318894	2274		NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
212661	chr7	129539001	129539400	+	0	NA	Intergenic	AluJr|SINE|Alu	36669	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
213032	chr7	131036801	131037450	+	0	NA	intron (NR_109850, intron 3 of 5)	L1ME3C|LINE|L1	69905	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
193215	chr6	29827701	29828880	+	0	NA	exon (NM_001384280, exon 4 of 9)	exon (NM_001384280, exon 4 of 9)	465	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
125972	chr2	25255171	25255330	+	0	NA	intron (NR_135490, intron 6 of 23)	intron (NR_135490, intron 6 of 23)	-2935	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
84979	chr16	31453271	31453600	+	0	NA	Intergenic	Intergenic	-4869	NM_001288767	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
14924	chr1	147540671	147542500	+	0	NA	promoter-TSS (NM_004326)	promoter-TSS (NM_004326)	84	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
4837	chr1	23634771	23635830	+	0	NA	intron (NR_167910, intron 4 of 5)	MIR|SINE|MIR	7966	NR_167904	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
85946	chr16	57187201	57188480	+	0	NA	intron (NM_001305163, intron 1 of 14)	intron (NM_001305163, intron 1 of 14)	1511	NM_001305164	89970		NM_133368	ENSG00000159579	RSPRY1	SEMDFA	ring finger and SPRY domain containing 1	protein-coding
38018	chr11	35121821	35123150	+	0	NA	Intergenic	MIRc|SINE|MIR	15547	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
55694	chr12	107687251	107687350	+	0	NA	intron (NM_001317962, intron 1 of 14)	intron (NM_001317962, intron 1 of 14)	1258	NM_001317962	11137		NM_007062	ENSG00000136045	PWP1	IEF-SSP-9502|NCLB	PWP1 homolog, endonuclein	protein-coding
204491	chr7	4764601	4765000	+	0	NA	3' UTR (NM_001037165, exon 9 of 9)	3' UTR (NM_001037165, exon 9 of 9)	-10823	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
102089	chr17	74969601	74969880	+	0	NA	promoter-TSS (NR_110878)	promoter-TSS (NR_110878)	-949	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
222964	chr8	143189951	143190280	+	0	NA	Intergenic	Intergenic	-23103	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
232087	chr9	133604321	133605030	+	0	NA	intron (NM_001080515, intron 1 of 2)	MER5A1|DNA|hAT-Charlie	4714	NM_001080515	642968		NM_001080515	ENSG00000196990	FAM163B	C9orf166	family with sequence similarity 163 member B	protein-coding
211713	chr7	106870051	106870350	+	0	NA	intron (NM_001282426, intron 2 of 10)	intron (NM_001282426, intron 2 of 10)	4721	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
55408	chr12	104476651	104476950	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	19852	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
197952	chr6	89949771	89949930	+	0	NA	intron (NM_021813, intron 7 of 8)	intron (NM_021813, intron 7 of 8)	55381	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
80995	chr16	4059901	4060730	+	0	NA	intron (NM_001116, intron 2 of 10)	L1M4a2|LINE|L1	56127	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
133232	chr2	113200921	113201200	+	0	NA	intron (NM_012455, intron 16 of 16)	intron (NM_012455, intron 16 of 16)	27089	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
48244	chr12	8388251	8389050	+	0	NA	intron (NR_024420, intron 1 of 1)	intron (NR_024420, intron 1 of 1)	2102	NR_024420	389634		NM_001012988	ENSG00000226091	LINC00937	-	long intergenic non-protein coding RNA 937	ncRNA
55160	chr12	100138401	100138680	+	0	NA	intron (NM_015054, intron 1 of 20)	MER20|DNA|hAT-Charlie	4334	NM_015054	23074		NM_015054	ENSG00000111647	BLTP3B	SHIP164|SHIP164A|UHRF1BP1L	bridge-like lipid transfer protein family member 3B	protein-coding
114583	chr19	12931201	12931780	+	0	NA	intron (NM_004461, intron 1 of 12)	AluSg|SINE|Alu	968	NR_149078	106144598		NR_149078	ENSG00000266975	FARSA-AS1	-	FARSA antisense RNA 1	ncRNA
130164	chr2	75640451	75640830	+	0	NA	Intergenic	Intergenic	-6143	NM_014763	9801		NM_014763	ENSG00000115364	MRPL19	L15mt|L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15|bL19m	mitochondrial ribosomal protein L19	protein-coding
218061	chr8	38907551	38907850	+	0	NA	intron (NM_021623, intron 1 of 11)	AluJb|SINE|Alu	6354	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
108560	chr18	74896471	74896700	+	0	NA	intron (NM_001384475, intron 7 of 8)	intron (NM_001384475, intron 7 of 8)	265622	NM_001146190	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
110006	chr19	1429951	1430880	+	0	NA	intron (NM_170711, intron 10 of 12)	intron (NM_170711, intron 10 of 12)	-7981	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
231617	chr9	131574471	131574700	+	0	NA	Intergenic	AluSx1|SINE|Alu	29062	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
165645	chr3	101814971	101815200	+	0	NA	intron (NM_001348997, intron 6 of 6)	intron (NM_001348997, intron 6 of 6)	-12905	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
134752	chr2	145258301	145258500	+	0	NA	Intergenic	Intergenic	590433	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
101619	chr17	68203921	68204180	+	0	NA	Intergenic	Intergenic	-2079	NM_001346481	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
222250	chr8	133216501	133216700	+	0	NA	intron (NM_001204869, intron 2 of 2)	intron (NM_001204869, intron 2 of 2)	25561	NM_080838	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
80960	chr16	3874171	3874530	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	5770	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
197602	chr6	80848251	80848350	+	0	NA	Intergenic	L1PA3|LINE|L1	741629	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
112287	chr19	5830251	5830750	+	0	NA	TTS (NM_001381959)	TTS (NM_001381959)	8292	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
217113	chr8	24957401	24957600	+	0	NA	promoter-TSS (NM_006158)	promoter-TSS (NM_006158)	-888	NM_006158	4747		NM_006158	ENSG00000277586	NEFL	CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110	neurofilament light chain	protein-coding
55195	chr12	101455651	101456380	+	0	NA	Intergenic	MER6|DNA|TcMar-Tigger	-19321	NM_152323	121599		NM_152323	ENSG00000166211	SPIC	SPI-C	Spi-C transcription factor	protein-coding
203934	chr7	1538851	1538950	+	0	NA	intron (NM_002360, intron 1 of 2)	intron (NM_002360, intron 1 of 2)	-4020	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
60147	chr13	39892771	39893250	+	0	NA	Intergenic	Intergenic	-228875	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
238687	chrX	154060421	154061030	+	0	NA	intron (NM_001316337, intron 2 of 4)	L2a|LINE|L2	36244	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
108689	chr18	77036271	77036830	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-19495	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
156104	chr22	40081001	40081400	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	36383	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
172356	chr4	1725771	1726650	+	0	NA	intron (NM_006342, intron 3 of 15)	intron (NM_006342, intron 3 of 15)	4689	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
28321	chr10	46294471	46294630	+	0	NA	intron (NM_001278688, intron 3 of 16)	intron (NM_001278688, intron 3 of 16)	7553	NM_001278688	195977		NM_001278688	ENSG00000274209	ANTXRL	-	ANTXR like	protein-coding
212084	chr7	115229201	115230000	+	0	NA	intron (NR_126407, intron 1 of 4)	intron (NR_126407, intron 1 of 4)	1755	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
214815	chr7	151228551	151228650	+	0	NA	Intergenic	AluJr|SINE|Alu	-1395	NR_160983	114483834		NM_005692	ENSG00000285292	ABCF2-H2BK1	ABCF2-H2BE1	ABCF2-H2BK1 readthrough	protein-coding
84095	chr16	29622551	29623050	+	0	NA	Intergenic	Intergenic	-9083	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
82389	chr16	16126801	16127000	+	0	NA	intron (NM_004996, intron 26 of 30)	intron (NM_004996, intron 26 of 30)	96571	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
108717	chr18	77082271	77082430	+	0	NA	intron (NM_001025100, intron 2 of 3)	L1MB8|LINE|L1	50433	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
238719	chrX	154159471	154159630	+	0	NA	TTS (NM_020061)	TTS (NM_020061)	15307	NM_020061	5956		NM_020061	ENSG00000102076	OPN1LW	CBBM|CBP|COD5|RCP|ROP	opsin 1, long wave sensitive	protein-coding
59824	chr13	30419601	30420000	+	0	NA	non-coding (NR_125771, exon 2 of 2)	non-coding (NR_125771, exon 2 of 2)	2444	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
204203	chr7	2506271	2506580	+	0	NA	Intergenic	AluSz|SINE|Alu	-6104	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
190901	chr6	2778971	2779330	+	0	NA	intron (NM_020135, intron 3 of 6)	intron (NM_020135, intron 3 of 6)	-8774	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
503	chr1	1196421	1196680	+	0	NA	intron (NM_001371649, intron 13 of 15)	intron (NM_001371649, intron 13 of 15)	10042	NM_148902	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
85816	chr16	56985521	56986200	+	0	NA	Intergenic	Intergenic	-3697	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
39107	chr11	48053701	48054130	+	0	NA	intron (NM_002843, intron 1 of 24)	MER102b|DNA|hAT-Charlie	-42867	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
69238	chr14	92846451	92846880	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	52360	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
68164	chr14	75709221	75709500	+	0	NA	intron (NM_015072, intron 9 of 31)	intron (NM_015072, intron 9 of 31)	48114	NM_015072	23093		NM_015072	ENSG00000119685	TTLL5	CORD19|KIAA0998|STAMP	tubulin tyrosine ligase like 5	protein-coding
157943	chr22	49795371	49796400	+	0	NA	intron (NR_146335, intron 7 of 13)	intron (NR_146335, intron 7 of 13)	28446	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
101787	chr17	73203201	73203750	+	0	NA	intron (NM_018714, intron 8 of 13)	intron (NM_018714, intron 8 of 13)	10420	NM_018714	9382		NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
93344	chr17	18217021	18218030	+	0	NA	Intergenic	Intergenic	-8110	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
54420	chr12	90959571	90959800	+	0	NA	Intergenic	Intergenic	-4509	NR_130711	196477		NM_152638	ENSG00000197651	CCER1	C12orf12	coiled-coil glutamate rich protein 1	protein-coding
78416	chr15	92101721	92102000	+	0	NA	intron (NM_013272, intron 3 of 9)	intron (NM_013272, intron 3 of 9)	247556	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
231789	chr9	132348451	132349050	+	0	NA	intron (NM_001351527, intron 3 of 25)	AluJb|SINE|Alu	6106	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
84060	chr16	29587501	29587800	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSx1|SINE|Alu	7442	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
720	chr1	1434101	1434780	+	0	NA	non-coding (NR_125994, exon 1 of 2)	non-coding (NR_125994, exon 1 of 2)	133	NR_125996	102724312		NR_125994		LINC01770	-	long intergenic non-protein coding RNA 1770	ncRNA
40267	chr11	63778271	63778450	+	0	NA	Intergenic	AluY|SINE|Alu	-9585	NM_001144936	65998		NM_023941	ENSG00000188070	ZFTA	C11orf95	zinc finger translocation associated	protein-coding
87722	chr16	75096851	75097150	+	0	NA	intron (NM_032268, intron 2 of 4)	intron (NM_032268, intron 2 of 4)	19772	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
209368	chr7	76293121	76293380	+	0	NA	Intergenic	Intergenic	-9423	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
95973	chr17	39156001	39156600	+	0	NA	TTS (NM_001143968)	TTS (NM_001143968)	-4663	NM_020405	57125		NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
186765	chr5	139331771	139332380	+	0	NA	TTS (NM_018834)	TTS (NM_018834)	-9757	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
90731	chr17	2020871	2021550	+	0	NA	TTS (NR_135642)	TTS (NR_135642)	3494	NR_135642	105371485		NR_135642	ENSG00000228133	LOC105371485	-	uncharacterized LOC105371485	ncRNA
69989	chr14	99995751	99996150	+	0	NA	intron (NM_001330221, intron 1 of 13)	intron (NM_001330221, intron 1 of 13)	24528	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
64635	chr14	31205471	31206030	+	0	NA	intron (NM_015382, intron 2 of 42)	intron (NM_015382, intron 2 of 42)	2043	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
166046	chr3	108661851	108662490	+	0	NA	exon (NM_014648, exon 21 of 33)	exon (NM_014648, exon 21 of 33)	72448	NM_014648	9666		NM_014648	ENSG00000198919	DZIP3	PPP1R66|UURF2|hRUL138	DAZ interacting zinc finger protein 3	protein-coding
35203	chr11	808821	810830	+	0	NA	promoter-TSS (NM_001004)	promoter-TSS (NM_001004)	-142	NM_001004	6181		NM_001004	ENSG00000177600	RPLP2	D11S2243E|LP2|P2|RPP2	ribosomal protein lateral stalk subunit P2	protein-coding
190651	chr5	181237001	181237480	+	0	NA	intron (NM_006098, intron 7 of 7)	AluJr|SINE|Alu	4649	NR_002592	619571		NR_002592	ENSG00000272296	SNORD96A	U96A	small nucleolar RNA, C/D box 96A	snoRNA
19563	chr1	179121121	179121830	+	0	NA	intron (NM_001136001, intron 4 of 9)	intron (NM_001136001, intron 4 of 9)	21601	NM_001168239	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
27508	chr10	32290501	32290700	+	0	NA	intron (NR_168511, intron 6 of 13)	intron (NR_168511, intron 6 of 13)	56558	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
88541	chr16	85446801	85447000	+	0	NA	Intergenic	Intergenic	-140575	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
38226	chr11	36425951	36426850	+	0	NA	intron (NM_001160167, intron 4 of 8)	MIR|SINE|MIR	25403	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
202507	chr6	158518001	158518800	+	0	NA	Intergenic	Intergenic	-18240	NM_020823	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
132509	chr2	106088521	106088780	+	0	NA	Intergenic	L1MDa|LINE|L1	22962	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
226720	chr9	75156851	75157200	+	0	NA	Intergenic	L1ME1|LINE|L1	68511	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
186839	chr5	139443551	139444250	+	0	NA	Intergenic	Intergenic	-4375	NM_152686	202052		NM_152686	ENSG00000170464	DNAJC18	-	DnaJ heat shock protein family (Hsp40) member C18	protein-coding
5476	chr1	25663521	25663980	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	-32405	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
127985	chr2	46921851	46922350	+	0	NA	intron (NM_001288953, intron 2 of 20)	intron (NM_001288953, intron 2 of 20)	-5988	NM_001171507	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
156565	chr22	41456701	41456900	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-9999	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
229523	chr9	122815901	122817000	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	12138	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
98953	chr17	48642501	48643150	+	0	NA	Intergenic	CpG	-10266	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
202886	chr6	159978351	159978880	+	0	NA	intron (NM_000876, intron 1 of 47)	intron (NM_000876, intron 1 of 47)	9533	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
29889	chr10	73093371	73093880	+	0	NA	intron (NM_001142595, intron 1 of 15)	AluY|SINE|Alu	3349	NM_001142596	5033		NM_000917	ENSG00000122884	P4HA1	P4HA	prolyl 4-hydroxylase subunit alpha 1	protein-coding
149804	chr21	34986721	34988050	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	52041	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
170782	chr3	188947451	188947900	+	0	NA	promoter-TSS (NR_046873)	promoter-TSS (NR_046873)	-36	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
47511	chr12	4117751	4118710	+	0	NA	Intergenic	Intergenic	-155532	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
190378	chr5	179754921	179755380	+	0	NA	intron (NM_014757, intron 1 of 4)	MIRb|SINE|MIR	22328	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
217736	chr8	30720001	30720950	+	0	NA	intron (NM_001195104, intron 1 of 10)	L2a|LINE|L2	7371	NM_000637	2936		NM_000637	ENSG00000104687	GSR	GR|GSRD|HEL-75|HEL-S-122m	glutathione-disulfide reductase	protein-coding
209396	chr7	76322001	76322200	+	0	NA	Intergenic	Intergenic	19427	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
18338	chr1	161199401	161199600	+	0	NA	promoter-TSS (NM_001320336)	promoter-TSS (NM_001320336)	185	NM_004550	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
91750	chr17	6757151	6757450	+	0	NA	intron (NM_001353139, intron 1 of 5)	AluSq2|SINE|Alu	1254	NM_199139	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
135486	chr2	161507741	161507930	+	0	NA	promoter-TSS (NR_077058)	promoter-TSS (NR_077058)	67	NR_077058	285116		NR_077058		AHCTF1P1	AHCTF1P|ELYS-like	AT-hook containing transcription factor 1 pseudogene 1	pseudo
61380	chr13	51447721	51448380	+	0	NA	3' UTR (NM_001039938, exon 3 of 3)	3' UTR (NM_001039938, exon 3 of 3)	4986	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
221532	chr8	124687421	124688680	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	40423	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
72104	chr15	28935121	28935830	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	1471	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
164882	chr3	71085501	71085900	+	0	NA	intron (NM_001244810, intron 7 of 20)	MIRb|SINE|MIR	-20776	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
130505	chr2	85593351	85593850	+	0	NA	TTS (NM_006634)	TTS (NM_006634)	-2145	NM_016494	51255		NM_016494	ENSG00000168894	RNF181	HSPC238	ring finger protein 181	protein-coding
20777	chr1	201018151	201018450	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	5414	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
11022	chr1	84861401	84862030	+	0	NA	intron (NM_012152, intron 2 of 2)	intron (NM_012152, intron 2 of 2)	31491	NM_012152	23566		NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
212317	chr7	127253351	127254580	+	0	NA	Intergenic	CpG-26351	-1024	NM_001371083	2918		NM_000845	ENSG00000179603	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	glutamate metabotropic receptor 8	protein-coding
70352	chr14	101870421	101870680	+	0	NA	intron (NM_178587, intron 2 of 11)	L1MD3|LINE|L1	60687	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
125876	chr2	24579421	24579680	+	0	NA	intron (NM_001362955, intron 3 of 23)	L1MEg|LINE|L1	-4927	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
144108	chr20	33852401	33852800	+	0	NA	intron (NM_176812, intron 4 of 4)	MER20|DNA|hAT-Charlie	41252	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
36787	chr11	9463071	9463530	+	0	NA	intron (NM_001282656, intron 1 of 15)	L1MB5|LINE|L1	2288	NM_003442	7702		NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
46719	chr11	128868851	128870780	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2519	NM_153764	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
156472	chr22	41259721	41259980	+	0	NA	intron (NM_001278651, intron 7 of 16)	AluSx|SINE|Alu	-6800	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
100804	chr17	64055071	64055230	+	0	NA	intron (NM_001433, intron 13 of 21)	intron (NM_001433, intron 13 of 21)	-34516	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
52544	chr12	56133001	56133400	+	0	NA	intron (NM_015292, intron 10 of 30)	intron (NM_015292, intron 10 of 30)	4933	NM_015292	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
237265	chrX	110341451	110341550	+	0	NA	intron (NM_001171689, intron 2 of 7)	Tigger7|DNA|TcMar-Tigger	-17348	NM_001385449	57529		NM_020769	ENSG00000243978	RTL9	MAR9|MART9|RGAG1|SIRH10	retrotransposon Gag like 9	protein-coding
198148	chr6	90574571	90574730	+	0	NA	intron (NM_145333, intron 1 of 14)	intron (NM_145333, intron 1 of 14)	12422	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
87214	chr16	69464901	69465700	+	0	NA	3' UTR (NM_030579, exon 5 of 5)	3' UTR (NM_030579, exon 5 of 5)	40681	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
203078	chr6	166326551	166326650	+	0	NA	intron (NM_145169, intron 4 of 7)	MIRc|SINE|MIR	15945	NR_130113	113402		NM_145169	ENSG00000198818	SFT2D1	C6orf83|pRGR1	SFT2 domain containing 1	protein-coding
236970	chrX	101395151	101395450	+	0	NA	intron (NM_001199974, intron 3 of 3)	intron (NM_001199974, intron 3 of 3)	4289	NM_021029	6173		NM_021029	ENSG00000241343	RPL36A	L36A|L44L|MIG6|RPL44|eL42	ribosomal protein L36a	protein-coding
103910	chr17	79816671	79817100	+	0	NA	Intergenic	Intergenic	-6567	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
148976	chr21	13981551	13981650	+	0	NA	Intergenic	REP522|Satellite|telo	-1156	NR_027270	391267		NM_153750	ENSG00000291280	ANKRD20A11P	C21orf81	ankyrin repeat domain 20 family member A11, pseudogene	pseudo
136018	chr2	172439121	172439580	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	11764	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
234304	chrX	13715471	13715630	+	0	NA	intron (NM_001128835, intron 5 of 5)	intron (NM_001128835, intron 5 of 5)	19070	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
3528	chr1	16071671	16071830	+	0	NA	intron (NM_182623, intron 1 of 6)	intron (NM_182623, intron 1 of 6)	1901	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
52052	chr12	54019401	54019900	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	2762	NM_014620	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
234031	chrX	3813721	3817480	+	0	NA	Intergenic	CpG	28294	NR_034031	389906		NM_001045547	ENSG00000285756	LOC389906	-	zinc finger protein 839 pseudogene	pseudo
160930	chr3	36880321	36880950	+	0	NA	intron (NM_014831, intron 7 of 22)	intron (NM_014831, intron 7 of 22)	-58135	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
148588	chr21	5101121	5102380	+	0	NA	promoter-TSS (NR_146631)	promoter-TSS (NR_146631)	-310	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
134880	chr2	148873521	148873930	+	0	NA	Intergenic	Intergenic	-1502	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
209431	chr7	76379271	76380580	+	0	NA	Intergenic	CpG	-17597	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
163017	chr3	49794951	49795250	+	0	NA	exon (NM_001007540, exon 9 of 19)	exon (NM_001007540, exon 9 of 19)	4773	NM_001007540	389118		NM_001007540	ENSG00000187492	CDHR4	CDH29|PRO34300	cadherin related family member 4	protein-coding
226173	chr9	64639401	64640030	+	0	NA	promoter-TSS (NR_136299).3	promoter-TSS (NR_136299).3	-19	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
84325	chr16	30169621	30170300	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-13450	NM_001193333	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
71513	chr14	106120251	106120550	+	0	NA	Intergenic	Intergenic	-148131	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
120748	chr19	45401401	45401780	+	0	NA	intron (NM_001142502, intron 1 of 12)	intron (NM_001142502, intron 1 of 12)	3479	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
145503	chr20	43955201	43956200	+	0	NA	intron (NM_032883, intron 2 of 9)	intron (NM_032883, intron 2 of 9)	9804	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
181416	chr5	40753951	40755400	+	0	NA	intron (NM_012382, intron 1 of 4)	L2c|LINE|L2	1286	NM_012382	23548		NM_012382	ENSG00000113638	TTC33	OSRF	tetratricopeptide repeat domain 33	protein-coding
166079	chr3	108868521	108868780	+	0	NA	Intergenic	AluYj4|SINE|Alu	45864	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
179329	chr4	182807651	182808250	+	0	NA	Intergenic	CpG	109303	NM_001351747	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
201098	chr6	142844251	142844650	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	100726	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
169727	chr3	172194771	172194930	+	0	NA	intron (NM_022763, intron 3 of 25)	intron (NM_022763, intron 3 of 25)	154319	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
211864	chr7	111017171	111017330	+	0	NA	intron (NM_032549, intron 3 of 5)	AluJb|SINE|Alu	-73756	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
197420	chr6	73582471	73582630	+	0	NA	Intergenic	L1MB7|LINE|L1	-61518	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
84473	chr16	30472311	30473060	+	0	NA	promoter-TSS (NM_001114380)	promoter-TSS (NM_001114380)	-57	NM_002209	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
225824	chr9	37800301	37801730	+	0	NA	exon (NM_024345, exon 1 of 7)	exon (NM_024345, exon 1 of 7)	218	NM_024345	79269		NM_024345	ENSG00000122741	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
193201	chr6	29750751	29751150	+	0	NA	non-coding (NR_001590, exon 1 of 1)	non-coding (NR_001590, exon 1 of 1)	198	NR_001590	340198		NR_001590	ENSG00000235821	IFITM4P	dJ377H14.5	interferon induced transmembrane protein 4 pseudogene	pseudo
100037	chr17	58002521	58003330	+	0	NA	non-coding (NR_034041, exon 4 of 4)	non-coding (NR_034041, exon 4 of 4)	4321	NM_001078166	6426		NM_006924	ENSG00000136450	SRSF1	ASF|NEDFBA|SF2|SF2p33|SFRS1|SRp30a	serine and arginine rich splicing factor 1	protein-coding
230039	chr9	127385571	127385730	+	0	NA	intron (NR_104591, intron 24 of 26)	intron (NR_104591, intron 24 of 26)	-11488	NM_001271711	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
188486	chr5	154779801	154780200	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	22846	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
223184	chr8	143562021	143562280	+	0	NA	intron (NM_001166237, intron 11 of 13).2	intron (NM_001166237, intron 11 of 13).2	3804	NM_024736	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
215599	chr7	158998351	158998680	+	0	NA	Intergenic	Intergenic	-9839	NR_024394	154822		NM_198345	ENSG00000231419	LINC00689	STORM	long intergenic non-protein coding RNA 689	ncRNA
141518	chr2	241213151	241213700	+	0	NA	intron (NM_001370694, intron 17 of 24)	intron (NM_001370694, intron 17 of 24)	24748	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
12558	chr1	108694421	108695100	+	0	NA	intron (NM_001349770, intron 2 of 7)	intron (NM_001349770, intron 2 of 7)	2450	NM_001349759	55119		NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
87655	chr16	74580921	74581180	+	0	NA	intron (NM_001145667, intron 1 of 25)	L1MB3|LINE|L1	26064	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
90120	chr16	90116151	90116710	+	0	NA	intron (NR_126161, intron 3 of 3)	intron (NR_126161, intron 3 of 3)	14166	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
45744	chr11	119147751	119148350	+	0	NA	Intergenic	Intergenic	-1002	NM_001348192	64137		NM_022169	ENSG00000172350	ABCG4	WHITE2	ATP binding cassette subfamily G member 4	protein-coding
217360	chr8	27855271	27855630	+	0	NA	Intergenic	Intergenic	-17633	NM_001363040	55872		NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
137631	chr2	197359851	197360180	+	0	NA	Intergenic	Intergenic	-49235	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
200380	chr6	134246851	134247980	+	0	NA	intron (NM_001143676, intron 2 of 13)	intron (NM_001143676, intron 2 of 13)	-69554	NM_001143677	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
38703	chr11	46621521	46621780	+	0	NA	intron (NM_001346320, intron 3 of 18)	intron (NM_001346320, intron 3 of 18)	4097	NM_001346311	9776		NM_014741	ENSG00000175224	ATG13	KIAA0652|PARATARG8	autophagy related 13	protein-coding
193080	chr6	28807771	28807930	+	0	NA	Intergenic	tRNA-Phe-TTY|tRNA|tRNA	55827	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
221905	chr8	128659221	128659940	+	0	NA	Intergenic	Intergenic	-94901	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
24545	chr1	244856301	244856500	+	0	NA	intron (NM_031844, intron 10 of 13)	intron (NM_031844, intron 10 of 13)	-2183	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
35726	chr11	1997771	1997930	+	0	NA	promoter-TSS (NR_002196)	promoter-TSS (NR_002196)	25	NR_131223	283120		NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2	H19 imprinted maternally expressed transcript	ncRNA
130932	chr2	87493371	87493530	+	0	NA	intron (NR_146461, intron 2 of 2)	AluSx1|SINE|Alu	23500	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
173136	chr4	6643721	6643980	+	0	NA	Intergenic	L1MD3|LINE|L1	3759	NM_001272053	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
156	chr1	534171	534400	+	0	NA	Intergenic	AluSp|SINE|Alu	-38840	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
149037	chr21	14763051	14763600	+	0	NA	Intergenic	Intergenic	-120218	NM_001256579	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
86402	chr16	66739671	66740430	+	0	NA	intron (NM_001286157, intron 3 of 11)	intron (NM_001286157, intron 3 of 11)	11559	NM_006141	1783		NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding
20257	chr1	193558601	193559000	+	0	NA	Intergenic	Intergenic	254055	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
76996	chr15	78317201	78317450	+	0	NA	Intergenic	L2|LINE|L2	-17716	NM_001303247	80349		NM_025234	ENSG00000140395	SKIC8	REC14|SKI8|WDR61	SKI8 subunit of superkiller complex	protein-coding
6701	chr1	29179501	29180180	+	0	NA	intron (NM_005626, intron 1 of 5)	intron (NM_005626, intron 1 of 5)	2060	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
51528	chr12	52302601	52302800	+	0	NA	intron (NM_001320198, intron 3 of 10)	intron (NM_001320198, intron 3 of 10)	-11166	NM_002281	3887		NM_002281	ENSG00000205426	KRT81	HB1|Hb-1|K81|KRTHB1|MLN137|ghHkb1|hHAKB2-1	keratin 81	protein-coding
221655	chr8	125947051	125948100	+	0	NA	intron (NR_038446, intron 1 of 1)	MER92-int|LTR|ERV1	3622	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
228458	chr9	99844371	99844950	+	0	NA	exon (NM_006981, exon 6 of 8)	exon (NM_006981, exon 6 of 8)	22775	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
182943	chr5	70950571	70950930	+	0	NA	intron (NM_022875, intron 7 of 7).2	AluY|SINE|Alu	25663	NM_017411	6607		NM_017411	ENSG00000205571	SMN2	BCD541|C-BCD541|GEMIN1|SMNC|TDRD16B	survival of motor neuron 2, centromeric	protein-coding
124470	chr19	58541041	58541630	+	0	NA	intron (NM_001316980, intron 1 of 2)	intron (NM_001316980, intron 1 of 2)	377	NM_001316980	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
31900	chr10	100348651	100348750	+	0	NA	intron (NM_005063, intron 2 of 5)	L3|LINE|CR1	1467	NM_005063	6319		NM_005063	ENSG00000099194	SCD	FADS5|MSTP008|SCD1|SCDOS|hSCD1	stearoyl-CoA desaturase	protein-coding
212811	chr7	130411221	130411480	+	0	NA	intron (NM_018718, intron 4 of 10)	intron (NM_018718, intron 4 of 10)	29666	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
91270	chr17	4046671	4046930	+	0	NA	intron (NM_015113, intron 37 of 54)	intron (NM_015113, intron 37 of 54)	69697	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
203162	chr6	167055121	167055380	+	0	NA	Intergenic	Intergenic	55853	NM_194429	11116		NM_007045	ENSG00000213066	CEP43	FGFR1OP|FOP	centrosomal protein 43	protein-coding
28091	chr10	43382971	43383130	+	0	NA	Intergenic	AluSx|SINE|Alu	11406	NM_001184963	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
212536	chr7	128847621	128847880	+	0	NA	exon (NM_001127487, exon 25 of 47)	exon (NM_001127487, exon 25 of 47)	14876	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
200234	chr6	131694871	131695150	+	0	NA	intron (NM_005021, intron 15 of 24)	intron (NM_005021, intron 15 of 24)	6391	NM_030908	79541		NM_030908	ENSG00000180658	OR2A4	OR2A10|OR2A7	olfactory receptor family 2 subfamily A member 4	protein-coding
37812	chr11	33015521	33016550	+	0	NA	promoter-TSS (NM_139160)	promoter-TSS (NM_139160)	-147	NM_139160	91614		NM_139160	ENSG00000121690	DEPDC7	TR2|dJ85M6.4	DEP domain containing 7	protein-coding
17439	chr1	156675771	156676130	+	0	NA	intron (NM_006617, intron 1 of 3)	intron (NM_006617, intron 1 of 3)	1457	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
170850	chr3	190862571	190863030	+	0	NA	promoter-TSS (NM_001146686)	promoter-TSS (NM_001146686)	-106	NM_001146686	647309		NM_001146686	ENSG00000205835	GMNC	GEMC1	geminin coiled-coil domain containing	protein-coding
64412	chr14	24177371	24178100	+	0	NA	exon (NM_005132, exon 12 of 20)	exon (NM_005132, exon 12 of 20)	5655	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
107135	chr18	35121651	35121950	+	0	NA	intron (NR_046177, intron 4 of 6)	intron (NR_046177, intron 4 of 6)	80387	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
148949	chr21	10325401	10326300	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-87647	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
173614	chr4	11156121	11156200	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-212667	NR_030298	693157		NR_030298	ENSG00000207716	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
194659	chr6	33628301	33628600	+	0	NA	intron (NM_002224, intron 1 of 57)	intron (NM_002224, intron 1 of 57)	5295	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
122447	chr19	49491351	49493060	+	0	NA	TTS (NR_000018)	TTS (NR_000018)	1030	NR_000018	26816		NR_000018	ENSG00000200259	SNORD35A	RNU35|RNU35A|U35	small nucleolar RNA, C/D box 35A	snoRNA
66736	chr14	64502301	64504300	+	0	NA	intron (NM_001304507, intron 1 of 5)	CpG	538	NM_001354685	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
100210	chr17	59158751	59159280	+	0	NA	intron (NM_018304, intron 1 of 9)	AluSx|SINE|Alu	3269	NM_018304	55771		NM_018304	ENSG00000068489	PRR11	-	proline rich 11	protein-coding
207707	chr7	45985871	45986030	+	0	NA	Intergenic	Intergenic	-64678	NM_000598	3486		NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP-3|IBP3|IGFBP-3	insulin like growth factor binding protein 3	protein-coding
164750	chr3	69065151	69065730	+	0	NA	intron (NM_003968, intron 6 of 17)	L1MD1|LINE|L1	-13107	NM_001363879	7110		NM_007114	ENSG00000144747	TMF1	ARA160|TMF	TATA element modulatory factor 1	protein-coding
110494	chr19	2040771	2040930	+	0	NA	intron (NM_199054, intron 12 of 13)	intron (NM_199054, intron 12 of 13)	10394	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
150414	chr21	42399421	42399900	+	0	NA	Intergenic	L1MA9|LINE|L1	-3608	NM_032405	64699		NM_024022	ENSG00000160183	TMPRSS3	DFNB10|DFNB8|ECHOS1|TADG12	transmembrane serine protease 3	protein-coding
137709	chr2	197505851	197506150	+	0	NA	intron (NM_001202485, intron 2 of 8)	MIRb|SINE|MIR	5621	NM_001202485	100529241		NM_001202485	ENSG00000270757	HSPE1-MOB4	HSPE1-PHOCN	HSPE1-MOB4 readthrough	protein-coding
233802	chrX	1453601	1454750	+	0	NA	promoter-TSS (NM_001173473).2	promoter-TSS (NM_001173473).2	-413	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
39309	chr11	58686051	58686450	+	0	NA	Intergenic	L1M4|LINE|L1	45693	NM_201648	10249		NM_005838	ENSG00000149124	GLYAT	ACGNAT|CAT|GAT	glycine-N-acyltransferase	protein-coding
82187	chr16	14938651	14939050	+	0	NA	intron (NR_146231, intron 31 of 38)	AluSc8|SINE|Alu	1407	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
53933	chr12	71757121	71757850	+	0	NA	intron (NM_014999, intron 1 of 6)	intron (NM_014999, intron 1 of 6)	2622	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
194909	chr6	34756121	34758300	+	0	NA	promoter-TSS (NM_003093)	promoter-TSS (NM_003093)	116	NR_029472	6631		NM_003093	ENSG00000124562	SNRPC	U1C|Yhc1	small nuclear ribonucleoprotein polypeptide C	protein-coding
163230	chr3	50261671	50262180	+	0	NA	Intergenic	Intergenic	5446	NR_110702	101928931		NR_110702		SEMA3B-AS1	-	SEMA3B antisense RNA 1 (head to head)	ncRNA
125849	chr2	24454801	24455200	+	0	NA	Intergenic	Intergenic	-36254	NM_147223	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
118103	chr19	34430601	34431200	+	0	NA	intron (NM_005499, intron 2 of 16)	intron (NM_005499, intron 2 of 16)	2519	NM_005499	10054		NM_005499	ENSG00000126261	UBA2	ACCES|ARX|HRIHFB2115|SAE2	ubiquitin like modifier activating enzyme 2	protein-coding
230333	chr9	127983751	127984380	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3076	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
74853	chr15	63527901	63528680	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	23697	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
60349	chr13	40792451	40793250	+	0	NA	intron (NM_014252, intron 1 of 6)	intron (NM_014252, intron 1 of 6)	3239	NM_014252	10166		NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|LNC-HC|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
3878	chr1	17003571	17003730	+	0	NA	intron (NM_001141974, intron 6 of 26)	intron (NM_001141974, intron 6 of 26)	8278	NM_001141974	23400		NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9|SPG78	ATPase cation transporting 13A2	protein-coding
173713	chr4	15776751	15777250	+	0	NA	Intergenic	L1PA10|LINE|L1	-1328	NM_001775	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
115188	chr19	14446901	14447350	+	0	NA	intron (NM_002741, intron 4 of 21)	AluSz|SINE|Alu	6848	NM_213560	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
166373	chr3	113035321	113035730	+	0	NA	Intergenic	LTR50|LTR|ERVL	-15854	NM_001319109	25871		NM_015412	ENSG00000163608	NEPRO	ANXD3|C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
179023	chr4	165111271	165111430	+	0	NA	intron (NM_001100389, intron 1 of 5)	AluSx1|SINE|Alu	1510	NM_001100389	201931		NM_152681	ENSG00000170088	TMEM192	-	transmembrane protein 192	protein-coding
159211	chr3	12894851	12895230	+	0	NA	Intergenic	AluJb|SINE|Alu	-9829	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
232035	chr9	133406551	133407480	+	0	NA	TTS (NR_103997)	TTS (NR_103997)	-7322	NR_024514	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
119291	chr19	39821821	39822080	+	0	NA	Intergenic	L2b|LINE|L2	7852	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
201066	chr6	142627571	142627880	+	0	NA	intron (NR_027311, intron 1 of 2)	MIRb|SINE|MIR	10111	NR_027311	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
30897	chr10	86972851	86974030	+	0	NA	intron (NM_133447, intron 1 of 11)	LTR26C|LTR|ERV1	3104	NM_133447	119385		NM_133447	ENSG00000271880	AGAP11	-	ArfGAP with GTPase domain, ankyrin repeat and PH domain 11	ncRNA
83148	chr16	23434221	23434750	+	0	NA	intron (NM_153603, intron 5 of 16)	intron (NM_153603, intron 5 of 16)	18704	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
236699	chrX	77783721	77784380	+	0	NA	intron (NM_138270, intron 1 of 33)	intron (NM_138270, intron 1 of 33)	2166	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
106697	chr18	23378871	23379130	+	0	NA	intron (NR_148385, intron 4 of 13)	intron (NR_148385, intron 4 of 13)	58961	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
4399	chr1	21024071	21024230	+	0	NA	intron (NM_001198801, intron 4 of 34)	SVA_F|Retroposon|SVA	-35718	NR_031657	100302155		NR_031657	ENSG00000221808	MIR1256	MIRN1256|hsa-mir-1256	microRNA 1256	ncRNA
7174	chr1	32258871	32259700	+	0	NA	intron (NM_005356, intron 1 of 12)	AluJb|SINE|Alu	8020	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
171032	chr3	195154721	195155250	+	0	NA	intron (NM_001308069, intron 3 of 3)	intron (NM_001308069, intron 3 of 3)	7114	NR_102711	101410543		NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
58643	chr12	132513071	132513300	+	0	NA	intron (NM_001382740, intron 2 of 11)	MER102a|DNA|hAT-Charlie	7779	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
149210	chr21	25399521	25399930	+	0	NA	intron (NR_024027, intron 4 of 4)	AluY|SINE|Alu	31976	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
43417	chr11	77447051	77447350	+	0	NA	intron (NM_001376284, intron 1 of 15)	intron (NM_001376284, intron 1 of 15)	26894	NM_001376277	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
33489	chr10	119100771	119101330	+	0	NA	Intergenic	AluJb|SINE|Alu	-3063	NR_130122	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
178155	chr4	142350101	142350300	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	-44256	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
113828	chr19	10616251	10617150	+	0	NA	intron (NM_001145056, intron 1 of 21)	AluSx1|SINE|Alu	-8853	NM_001363611	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
127492	chr2	42256521	42257080	+	0	NA	intron (NM_001145076, intron 3 of 21)	intron (NM_001145076, intron 3 of 21)	-86569	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
83841	chr16	28868921	28869180	+	0	NA	exon (NM_001308294, exon 3 of 9)	exon (NM_001308294, exon 3 of 9)	5057	NM_015503	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
11392	chr1	89670101	89670950	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	37405	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
163384	chr3	50496271	50496630	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	7184	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
104833	chr17	81823651	81823950	+	0	NA	intron (NM_207368, intron 3 of 4)	intron (NM_207368, intron 3 of 4)	9491	NM_001288798	348262		NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
66532	chr14	61760621	61761030	+	0	NA	Intergenic	AluJb|SINE|Alu	-1595	NM_003082	6617		NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
59978	chr13	32273251	32273450	+	0	NA	intron (NM_023037, intron 55 of 60)	AluYe5|SINE|Alu	42013	NM_001136571	646799		NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1 like	protein-coding
122331	chr19	49151771	49153930	+	0	NA	intron (NM_002152, intron 2 of 5)	AluSc8|SINE|Alu	2546	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
108332	chr18	63969851	63971600	+	0	NA	intron (NM_001366198, intron 1 of 6)	intron (NM_001366198, intron 1 of 6)	644	NM_001348368	5271		NM_002640	ENSG00000166401	SERPINB8	C18orf53|CAP2|PI-8|PI8|PSS5	serpin family B member 8	protein-coding
180058	chr5	1084751	1085250	+	0	NA	intron (NM_006598, intron 7 of 23).2	intron (NM_006598, intron 7 of 23).2	-22026	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
149128	chr21	17688821	17689300	+	0	NA	Intergenic	L1PB1|LINE|L1	-76159	NM_001130914	10950		NM_006806	ENSG00000154640	BTG3	ANA|ANA/BTG3|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding
113	chr1	488671	489180	+	0	NA	Intergenic	Intergenic	6520	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
202550	chr6	158648651	158650430	+	0	NA	promoter-TSS (NM_001242384)	promoter-TSS (NM_001242384)	-474	NM_001009991	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
56956	chr12	120502371	120502530	+	0	NA	TTS (NM_032314)	TTS (NM_032314)	6337	NM_003746	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
122004	chr19	48588901	48590100	+	0	NA	intron (NM_177973, intron 3 of 6)	L2a|LINE|L2	13764	NM_004605	6820		NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
112051	chr19	5141721	5141980	+	0	NA	intron (NM_015015, intron 18 of 22)	intron (NM_015015, intron 18 of 22)	172737	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
128260	chr2	54572901	54573580	+	0	NA	intron (NM_178313, intron 1 of 30)	MER1B|DNA|hAT-Charlie	14846	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
5250	chr1	25020421	25020730	+	0	NA	Intergenic	MIRc|SINE|MIR	-2928	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
12445	chr1	107696951	107697050	+	0	NA	intron (NM_006113, intron 17 of 26)	intron (NM_006113, intron 17 of 26)	-8501	NM_001079874	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
198167	chr6	95576321	95578350	+	0	NA	promoter-TSS (NM_024641)	promoter-TSS (NM_024641)	116	NR_047502	101927288		NR_047502	ENSG00000261366	MANEA-DT	MANEA-AS1	MANEA divergent transcript	ncRNA
170034	chr3	181711151	181712100	+	0	NA	promoter-TSS (NM_003106)	promoter-TSS (NM_003106)	-300	NM_003106	6657		NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box transcription factor 2	protein-coding
81787	chr16	11529801	11530350	+	0	NA	Intergenic	Intergenic	-2828	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
93383	chr17	18255651	18256700	+	0	NA	intron (NM_001256265, intron 3 of 28).2	MIR3|SINE|MIR	2563	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
13259	chr1	112713851	112714200	+	0	NA	intron (NM_005167, intron 1 of 9)	intron (NM_005167, intron 1 of 9)	1303	NM_005167	333926		NM_005167	ENSG00000155367	PPM1J	PP2C-zeta|PP2CZ|PP2Czeta|PPP2CZ	protein phosphatase, Mg2+/Mn2+ dependent 1J	protein-coding
239324	chrY	18326601	18326800	+	0	NA	intron (NR_002160, intron 1 of 2).2	intron (NR_002160, intron 1 of 2).2	146	NR_002160	401629		NR_002160		FAM224B	LINC00230B|NCRNA00230B	family with sequence similarity 224 member B	ncRNA
67298	chr14	69503701	69504000	+	0	NA	intron (NM_001161498, intron 6 of 12)	AluSx3|SINE|Alu	19122	NM_001161498	400224		NM_001161498	ENSG00000175985	PLEKHD1	UPF0639	pleckstrin homology and coiled-coil domain containing D1	protein-coding
167203	chr3	128326251	128326550	+	0	NA	intron (NM_021937, intron 4 of 6)	intron (NM_021937, intron 4 of 6)	-137194	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
170301	chr3	184333151	184333480	+	0	NA	intron (NM_198244, intron 29 of 29)	L2c|LINE|L2	-2611	NM_001366134	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
63753	chr14	21238701	21239030	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluSx|SINE|Alu	30577	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
166097	chr3	109808301	109808500	+	0	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	205572	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
181325	chr5	40385001	40385330	+	0	NA	Intergenic	Intergenic	-294750	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
48283	chr12	8911651	8912100	+	0	NA	Intergenic	Intergenic	-2634	NM_004426	1911		NM_004426	ENSG00000111752	PHC1	EDR1|HPH1|MCPH11|RAE28	polyhomeotic homolog 1	protein-coding
139043	chr2	218648321	218649050	+	0	NA	exon (NM_001379659, exon 7 of 11)	exon (NM_001379659, exon 7 of 11)	10938	NM_001366287	7701		NM_001105537	ENSG00000115568	ZNF142	HA4654|NEDISHM|pHZ-49	zinc finger protein 142	protein-coding
144824	chr20	36834771	36834930	+	0	NA	intron (NM_080627, intron 2 of 14)	AluSx|SINE|Alu	25023	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
220086	chr8	94217401	94217650	+	0	NA	promoter-TSS (NM_001144663)	promoter-TSS (NM_001144663)	-247	NM_001144663	1015		NM_004063	ENSG00000079112	CDH17	CDH16|HPT-1|HPT1	cadherin 17	protein-coding
158482	chr22	50785321	50785580	+	0	NA	intron (NR_026982, intron 2 of 2)	intron (NR_026982, intron 2 of 2)	1721	NR_026982	284942		NM_203302	ENSG00000291064	RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
59741	chr13	29925521	29925780	+	0	NA	intron (NR_047501, intron 1 of 1)	MIR3|SINE|MIR	1001	NR_047501	100861573		NR_047501	ENSG00000224405	LINC00572	-	long intergenic non-protein coding RNA 572	ncRNA
171298	chr3	195951901	195952250	+	0	NA	Intergenic	Intergenic	38204	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
41595	chr11	66365101	66365730	+	0	NA	intron (NR_125343, intron 10 of 11)	intron (NR_125343, intron 10 of 11)	6345	NM_001532	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
32613	chr10	103616051	103616150	+	0	NA	intron (NM_014631, intron 10 of 13)	intron (NM_014631, intron 10 of 13)	62115	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
231910	chr9	133094201	133094400	+	0	NA	Intergenic	AluSx1|SINE|Alu	11761	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
8796	chr1	42929651	42929950	+	0	NA	intron (NM_006516, intron 5 of 9)	intron (NM_006516, intron 5 of 9)	29068	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
100128	chr17	58379001	58379400	+	0	NA	intron (NM_017763, intron 2 of 9)	intron (NM_017763, intron 2 of 9)	23521	NM_001305545	54894		NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
155255	chr22	37985701	37985900	+	0	NA	intron (NM_001363825, intron 5 of 5)	intron (NM_001363825, intron 5 of 5)	-1245	NM_006941	6663		NM_006941	ENSG00000100146	SOX10	DOM|PCWH|SOX-10|WS2E|WS4|WS4C	SRY-box transcription factor 10	protein-coding
224503	chr9	19047751	19047850	+	0	NA	intron (NM_001287049, intron 1 of 3)	HAL1|LINE|L1	1554	NM_001287049	158297		NM_153707	ENSG00000155875	SAXO1	C9orf138|FAM154A	stabilizer of axonemal microtubules 1	protein-coding
192956	chr6	27828171	27828530	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	3210	NM_003541	8362		NM_003541	ENSG00000273542	H4C12	H4-16|H4/d|H4C1|H4C11|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2iii|H4FD|HIST1H4K|dJ160A22.1	H4 clustered histone 12	protein-coding
14711	chr1	145934551	145934850	+	0	NA	3' UTR (NM_153713, exon 6 of 6)	3' UTR (NM_153713, exon 6 of 6)	-7216	NM_005105	9939		NM_005105	ENSG00000265241	RBM8A	BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1	RNA binding motif protein 8A	protein-coding
131078	chr2	88766371	88766550	+	0	NA	intron (NR_015424, intron 1 of 16)	intron (NR_015424, intron 1 of 16)	558	NR_015424	645784		NR_015424	ENSG00000291127	ANKRD36BP2	-	ankyrin repeat domain 36B pseudogene 2	pseudo
151412	chr21	46056451	46056830	+	0	NA	Intergenic	Intergenic	-41472	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
111492	chr19	3967201	3967400	+	0	NA	intron (NM_001348, intron 2 of 8)	AluSx3|SINE|Alu	3799	NM_001348	1613		NM_001348	ENSG00000167657	DAPK3	DLK|ZIP|ZIPK	death associated protein kinase 3	protein-coding
99403	chr17	49999501	49999700	+	0	NA	Intergenic	L2b|LINE|L2	-4376	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
215577	chr7	158828101	158828500	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	1209	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
177352	chr4	110164751	110166000	+	0	NA	intron (NM_024090, intron 1 of 3)	intron (NM_024090, intron 1 of 3)	33240	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
48076	chr12	7144221	7144880	+	0	NA	intron (NM_014718, intron 12 of 17)	MIR|SINE|MIR	14179	NM_014718	9746		NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
37958	chr11	34600321	34600600	+	0	NA	Intergenic	Intergenic	-20633	NM_001378042	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
41560	chr11	66323551	66323650	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-6556	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
161160	chr3	39096901	39097100	+	0	NA	TTS (NM_001346225)	TTS (NM_001346225)	10627	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
146986	chr20	53158151	53158330	+	0	NA	intron (NM_173485, intron 1 of 2)	L2a|LINE|L2	-27043	NM_001193421	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
222207	chr8	133055801	133056180	+	0	NA	non-coding (NR_146773, exon 1 of 1)	non-coding (NR_146773, exon 1 of 1)	1031	NR_146773	100302522		NR_146773	ENSG00000287736	PTCSC1	NCRNA00197|PTCSC	papillary thyroid carcinoma susceptibility candidate 1	ncRNA
7214	chr1	32299471	32299830	+	0	NA	intron (NM_004964, intron 1 of 13)	intron (NM_004964, intron 1 of 13)	7567	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
192606	chr6	26025521	26026600	+	0	NA	TTS (NM_003544)	TTS (NM_003544)	1223	NM_003544	8366		NM_003544	ENSG00000278705	H4C2	H4-16|H4/I|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4FI|HIST1H4B	H4 clustered histone 2	protein-coding
238980	chrX	155577601	155578080	+	0	NA	intron (NM_018196, intron 1 of 7)	L1MA4A|LINE|L1	-34725	NM_001304990	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
24458	chr1	243846701	243847350	+	0	NA	intron (NM_001370074, intron 1 of 13)	intron (NM_001370074, intron 1 of 13)	3218	NM_005465	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
60641	chr13	42394721	42395630	+	0	NA	Intergenic	Intergenic	-29717	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
227864	chr9	93599821	93600080	+	0	NA	intron (NM_005392, intron 1 of 21)	intron (NM_005392, intron 1 of 21)	5109	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
176793	chr4	102516871	102517230	+	0	NA	intron (NM_001382625, intron 2 of 24)	intron (NM_001382625, intron 2 of 24)	-14564	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
171266	chr3	195868821	195869080	+	0	NA	intron (NM_005781, intron 11 of 14)	CpG	-8546	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
129672	chr2	70290621	70291850	+	0	NA	intron (NM_001317165, intron 1 of 4)	MIRb|SINE|MIR	1989	NM_001317167	6637		NM_003096	ENSG00000143977	SNRPG	SMG|Sm-G	small nuclear ribonucleoprotein polypeptide G	protein-coding
179590	chr4	185394301	185394880	+	0	NA	intron (NM_001385602, intron 1 of 8)	intron (NM_001385602, intron 1 of 8)	1334	NM_001385603	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
45056	chr11	117052451	117053250	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	45578	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
208933	chr7	74091551	74091900	+	0	NA	intron (NM_002314, intron 2 of 15)	intron (NM_002314, intron 2 of 15)	-1492	NM_001204426	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
131934	chr2	99087871	99088250	+	0	NA	intron (NM_025244, intron 10 of 20)	MER105|DNA|hAT-Charlie	53120	NR_146001	80705		NM_025244	ENSG00000135951	TSGA10	CEP4L|CT79|SPGF26	testis specific 10	protein-coding
209223	chr7	75616751	75617050	+	0	NA	intron (NM_001243198, intron 1 of 28)	intron (NM_001243198, intron 1 of 28)	-5084	NM_001382445	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
195460	chr6	37020271	37020630	+	0	NA	intron (NM_173558, intron 9 of 15)	intron (NM_173558, intron 9 of 15)	14795	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
139349	chr2	219636221	219636650	+	0	NA	exon (NM_201574, exon 15 of 23)	exon (NM_201574, exon 15 of 23)	8805	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
209347	chr7	76263021	76263700	+	0	NA	intron (NM_001291831, intron 8 of 15)	intron (NM_001291831, intron 8 of 15)	-39313	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
33037	chr10	110833251	110833750	+	0	NA	intron (NM_001134363, intron 13 of 13)	intron (NM_001134363, intron 13 of 13)	37404	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
94745	chr17	30805721	30806580	+	0	NA	intron (NM_015986, intron 1 of 7)	intron (NM_015986, intron 1 of 7)	18542	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
96428	chr17	40183121	40183580	+	0	NA	intron (NM_001303534, intron 2 of 14)	intron (NM_001303534, intron 2 of 14)	5880	NM_016339	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
219758	chr8	81087351	81088000	+	0	NA	intron (NM_018440, intron 1 of 8)	L1ME3E|LINE|L1	24393	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
52583	chr12	56178021	56178280	+	0	NA	intron (NM_003075, intron 14 of 27)	intron (NM_003075, intron 14 of 27)	11333	NM_001130420	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
9330	chr1	46605351	46605880	+	0	NA	Intergenic	AluJb|SINE|Alu	-1347	NM_001377373	8569		NM_003684	ENSG00000079277	MKNK1	MNK1	MAPK interacting serine/threonine kinase 1	protein-coding
215320	chr7	157349271	157350030	+	0	NA	intron (NM_001363676, intron 1 of 6)	AluJo|SINE|Alu	12646	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
233619	chrX	378521	378780	+	0	NA	intron (NM_013239, intron 1 of 12)	Charlie17b|DNA|hAT-Charlie	8257	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
103617	chr17	78732871	78733130	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSc|SINE|Alu	3902	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
221360	chr8	123314751	123315250	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-33034	NR_037516	100500863		NR_037516	ENSG00000207704	MIR548AA1	-	microRNA 548aa-1	ncRNA
236677	chrX	76882621	76882750	+	0	NA	intron (NR_110403, intron 1 of 3)	L1PA4|LINE|L1	36675	NR_029909	494333		NR_029909	ENSG00000283242	MIR384	MIRN384|hsa-mir-384	microRNA 384	ncRNA
106679	chr18	23229951	23230280	+	0	NA	intron (NR_023359, intron 4 of 6)	AluY|SINE|Alu	74290	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
15692	chr1	150980551	150980850	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1592	NM_003568	8416		NM_003568	ENSG00000143412	ANXA9	ANX31	annexin A9	protein-coding
156828	chr22	41940901	41942200	+	0	NA	intron (NM_001304373, intron 3 of 3)	intron (NM_001304373, intron 3 of 3)	-1331	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
195791	chr6	40981651	40981750	+	0	NA	intron (NR_110873, intron 1 of 5)	intron (NR_110873, intron 1 of 5)	41580	NR_110873	101929555		NR_110873		LOC101929555	-	uncharacterized LOC101929555	ncRNA
54893	chr12	95860551	95860650	+	0	NA	intron (NM_003095, intron 1 of 3)	AluJr|SINE|Alu	1648	NM_003095	6636		NM_003095	ENSG00000139343	SNRPF	SMF|Sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding
76581	chr15	75337751	75338450	+	0	NA	non-coding (NR_104313, exon 2 of 8)	non-coding (NR_104313, exon 2 of 8)	2037	NM_001321844	54939		NM_017828	ENSG00000140365	COMMD4	-	COMM domain containing 4	protein-coding
43650	chr11	85662021	85662450	+	0	NA	non-coding (NR_028024, exon 2 of 2)	non-coding (NR_028024, exon 2 of 2)	1366	NR_165399	58487		NM_021212	ENSG00000137504	CREBZF	SMILE|ZF	CREB/ATF bZIP transcription factor	protein-coding
201232	chr6	143598151	143598830	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-9690	NM_014721	9749		NM_014721	ENSG00000112419	PHACTR2	C6orf56	phosphatase and actin regulator 2	protein-coding
54922	chr12	96190771	96191180	+	0	NA	Intergenic	Tigger19a|DNA|TcMar-Tigger	-3400	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
160637	chr3	31551721	31551980	+	0	NA	intron (NM_178862, intron 1 of 15)	MLT1E1A|LTR|ERVL-MaLR	18925	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
4820	chr1	23611371	23612300	+	0	NA	Intergenic	MIRb|SINE|MIR	-15499	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
186449	chr5	137498971	137499450	+	0	NA	5' UTR (NM_004598, exon 1 of 11)	5' UTR (NM_004598, exon 1 of 11)	116	NM_004598	6695		NM_004598	ENSG00000152377	SPOCK1	SPOCK|TESTICAN|TIC1	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1	protein-coding
72322	chr15	31261071	31261230	+	0	NA	Intergenic	AluSz6|SINE|Alu	-30288	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
38135	chr11	35304471	35304930	+	0	NA	intron (NM_004171, intron 5 of 10)	(TC)n|Simple_repeat|Simple_repeat	114858	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
40494	chr11	64258901	64260750	+	0	NA	intron (NM_001316314, intron 13 of 31)	intron (NM_001316314, intron 13 of 31)	8295	NM_001184883	5331		NM_000932	ENSG00000149782	PLCB3	SMDCD	phospholipase C beta 3	protein-coding
16477	chr1	154671171	154671550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-43363	NM_001365045	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
207882	chr7	50392871	50393300	+	0	NA	intron (NM_006060, intron 7 of 7)	intron (NM_006060, intron 7 of 7)	57265	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
210862	chr7	101126451	101127450	+	0	NA	promoter-TSS (NM_000602)	promoter-TSS (NM_000602)	-154	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
217905	chr8	37894871	37895230	+	0	NA	intron (NM_025151, intron 1 of 4)	AluSq2|SINE|Alu	4447	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
35522	chr11	1561251	1561550	+	0	NA	intron (NM_004420, intron 3 of 6)	intron (NM_004420, intron 3 of 6)	10871	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
103789	chr17	79025471	79025800	+	0	NA	promoter-TSS (NR_049769)	promoter-TSS (NR_049769)	10	NR_049769	114897		NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and TNF related 1	protein-coding
92411	chr17	8379951	8380400	+	0	NA	intron (NM_001315531, intron 2 of 3)	intron (NM_001315531, intron 2 of 3)	3018	NM_001315530	6154		NM_000987	ENSG00000161970	RPL26	DBA11|L26|uL24	ribosomal protein L26	protein-coding
233787	chrX	1439071	1439550	+	0	NA	intron (NM_001173473, intron 2 of 12).2	CpG-29419	13599	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
176694	chr4	101014521	101014980	+	0	NA	Intergenic	Intergenic	226122	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
57119	chr12	121128801	121130000	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-3476	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
4483	chr1	21607721	21608250	+	0	NA	intron (NM_001350524, intron 19 of 27)	intron (NM_001350524, intron 19 of 27)	43913	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
33814	chr10	123282921	123283180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	128648	NM_004725	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
77789	chr15	86663371	86663530	+	0	NA	intron (NM_152336, intron 22 of 24)	intron (NM_152336, intron 22 of 24)	-269430	NR_135682	105370954		NR_135682	ENSG00000259636	LOC105370954	-	uncharacterized LOC105370954	ncRNA
9948	chr1	54681171	54681650	+	0	NA	intron (NM_001039464, intron 13 of 23)	LTR87|LTR|ERVL?	-34412	NM_001291333	7268		NM_004623	ENSG00000243725	TTC4	CNS1	tetratricopeptide repeat domain 4	protein-coding
34664	chr10	133346851	133346950	+	0	NA	promoter-TSS (NM_001145201)	promoter-TSS (NM_001145201)	-473	NM_001145201	118471		NM_145202	ENSG00000165828	PRAP1	PRO1195|UPA	proline rich acidic protein 1	protein-coding
39601	chr11	61332451	61334050	+	0	NA	promoter-TSS (NM_001351980)	promoter-TSS (NM_001351980)	22	NM_001351979	26007		NM_015533	ENSG00000149476	TKFC	DAK|NET45|TKFCD	triokinase and FMN cyclase	protein-coding
17087	chr1	156134371	156135280	+	0	NA	exon (NM_001257374, exon 4 of 13)	exon (NM_001257374, exon 4 of 13)	8655	NM_001257374	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
170978	chr3	194578071	194578400	+	0	NA	Intergenic	Intergenic	-6033	NR_047573	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
217655	chr8	30081731	30082600	+	0	NA	intron (NM_016127, intron 1 of 5)	AluSx3|SINE|Alu	899	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
50022	chr12	42590501	42590700	+	0	NA	promoter-TSS (NM_153026)	promoter-TSS (NM_153026)	-854	NM_153026	144165		NM_153026	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle planar cell polarity protein 1	protein-coding
212732	chr7	129860551	129861100	+	0	NA	intron (NM_003344, intron 3 of 6)	intron (NM_003344, intron 3 of 6)	-85811	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
80462	chr16	2688601	2689080	+	0	NA	intron (NM_018992, intron 1 of 5)	intron (NM_018992, intron 1 of 5)	6317	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
171683	chr3	197747951	197748250	+	0	NA	intron (NM_001145642, intron 1 of 20)	AluSx1|SINE|Alu	-1453	NM_001011537	84248		NM_032288	ENSG00000122068	FYTTD1	UIF	forty-two-three domain containing 1	protein-coding
82681	chr16	19884051	19884150	+	0	NA	intron (NM_001304771, intron 1 of 3)	CpG	748	NM_016235	51704		NM_016235	ENSG00000167191	GPRC5B	MLC3|RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding
175405	chr4	70843921	70844530	+	0	NA	Intergenic	HERV35I-int|LTR|ERV1	-4335	NM_002092	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
143322	chr20	25468501	25468700	+	0	NA	intron (NM_001318226, intron 17 of 22)	intron (NM_001318226, intron 17 of 22)	60917	NR_134574	9837		NM_021067	ENSG00000101003	GINS1	IMD55|PSF1	GINS complex subunit 1	protein-coding
174003	chr4	26346271	26346430	+	0	NA	intron (NM_001374403, intron 1 of 11)	LTR9|LTR|ERV1	3210	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
111985	chr19	4907801	4908000	+	0	NA	intron (NM_001290050, intron 1 of 16)	AluSp|SINE|Alu	-1601	NM_001048201	29128		NM_013282	ENSG00000276043	UHRF1	ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95	ubiquitin like with PHD and ring finger domains 1	protein-coding
159354	chr3	13262601	13263000	+	0	NA	intron (NM_001376938, intron 1 of 15)	L1MB3|LINE|L1	20457	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
57317	chr12	121677671	121677830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5106	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
60010	chr13	32527351	32527950	+	0	NA	intron (NM_001278432, intron 2 of 9)	intron (NM_001278432, intron 2 of 9)	11145	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
101802	chr17	73258571	73258750	+	0	NA	intron (NM_001129885, intron 2 of 5)	intron (NM_001129885, intron 2 of 5)	3220	NM_001129885	642843		NM_001129885	ENSG00000187959	CPSF4L	-	cleavage and polyadenylation specific factor 4 like	protein-coding
45128	chr11	117186501	117187100	+	0	NA	intron (NM_001040455, intron 10 of 25)	intron (NM_001040455, intron 10 of 25)	8057	NM_001040455	51092		NM_015996	ENSG00000149577	SIDT2	CGI-40	SID1 transmembrane family member 2	protein-coding
170586	chr3	186880171	186880930	+	0	NA	Intergenic	Intergenic	-19182	NR_046662	100874095		NR_046662	ENSG00000226482	ADIPOQ-AS1	-	ADIPOQ antisense RNA 1	ncRNA
124335	chr19	58277171	58277330	+	0	NA	3' UTR (NM_001320782, exon 7 of 7)	3' UTR (NM_001320782, exon 7 of 7)	-1705	NM_021089	7554		NM_021089	ENSG00000278129	ZNF8	HF.18|Zfp128	zinc finger protein 8	protein-coding
217532	chr8	29260121	29260850	+	0	NA	intron (NM_015254, intron 1 of 39)	intron (NM_015254, intron 1 of 39)	2585	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
10528	chr1	66952721	66952980	+	0	NA	intron (NM_001077702, intron 5 of 15)	AluJb|SINE|Alu	22594	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
194866	chr6	34531621	34532380	+	0	NA	intron (NM_001199583, intron 9 of 9)	intron (NM_001199583, intron 9 of 9)	17128	NM_001199583	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
71704	chr15	20306001	20306400	+	0	NA	Intergenic	(TGGCCC)n|Simple_repeat|Simple_repeat	23456	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
197819	chr6	87736751	87737450	+	0	NA	Intergenic	Intergenic	-34867	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
178613	chr4	152094971	152096550	+	0	NA	Intergenic	MIRb|SINE|MIR	-4993	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
221736	chr8	127659071	127659230	+	0	NA	Intergenic	MIR|SINE|MIR	74817	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
41829	chr11	67070321	67070780	+	0	NA	exon (NM_001300886, exon 2 of 3)	exon (NM_001300886, exon 2 of 3)	13703	NM_014578	29984		NM_014578	ENSG00000173156	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
1545	chr1	3456401	3456980	+	0	NA	intron (NM_014448, intron 1 of 14)	intron (NM_014448, intron 1 of 14)	2025	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
45821	chr11	119359251	119360500	+	0	NA	intron (NM_171997, intron 2 of 11)	intron (NM_171997, intron 2 of 11)	4333	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
115453	chr19	15339951	15340250	+	0	NA	Intergenic	AluSx|SINE|Alu	-7561	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
92150	chr17	7655351	7655800	+	0	NA	exon (NM_001678, exon 6 of 7)	exon (NM_001678, exon 6 of 7)	4649	NM_001678	482		NM_001678	ENSG00000129244	ATP1B2	AMOG	ATPase Na+/K+ transporting subunit beta 2	protein-coding
8961	chr1	44412021	44412480	+	0	NA	exon (NM_001319956, exon 2 of 15)	exon (NM_001319956, exon 2 of 15)	5458	NM_001376488	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
114055	chr19	11034051	11034550	+	0	NA	intron (NR_164683, intron 28 of 35)	intron (NR_164683, intron 28 of 35)	50176	NM_001128846	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
158995	chr3	10320601	10321530	+	0	NA	promoter-TSS (NM_001136026)	promoter-TSS (NM_001136026)	-24	NM_001136232	6396		NM_030673	ENSG00000157020	SEC13	D3S1231E|SEC13L1|SEC13R|npp-20	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding
118915	chr19	38727951	38728700	+	0	NA	exon (NM_001322033, exon 19 of 21)	exon (NM_001322033, exon 19 of 21)	16149	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
26642	chr10	22544521	22544980	+	0	NA	intron (NM_001330062, intron 7 of 9)	intron (NM_001330062, intron 7 of 9)	-106821	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
30698	chr10	80533421	80533850	+	0	NA	intron (NR_120661, intron 1 of 1)	SVA_D|Retroposon|SVA	2307	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
9712	chr1	53121851	53122150	+	0	NA	intron (NM_001287595, intron 2 of 10)	intron (NM_001287595, intron 2 of 10)	20638	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
209841	chr7	89623001	89623250	+	0	NA	Intergenic	L1PA16|LINE|L1	-496275	NR_003551	442523		NR_003551	ENSG00000291119	DPY19L2P4	-	DPY19L2 pseudogene 4	pseudo
165308	chr3	87167901	87168250	+	0	NA	Intergenic	Intergenic	58202	NR_039958	100616161		NR_039958	ENSG00000264119	MIR4795	-	microRNA 4795	ncRNA
168383	chr3	141931821	141932630	+	0	NA	Intergenic	AluJo|SINE|Alu	55582	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
64910	chr14	35406951	35407550	+	0	NA	Intergenic	Intergenic	-2501	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
75155	chr15	64626221	64626480	+	0	NA	intron (NM_015042, intron 3 of 9)	intron (NM_015042, intron 3 of 9)	76931	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
171784	chr4	244421	244780	+	0	NA	intron (NR_027481, intron 1 of 1)	HERVK-int|LTR|ERVK	32000	NR_027481	642280		NM_001039758	ENSG00000290382	ZNF876P	-	zinc finger protein 876, pseudogene	pseudo
181541	chr5	43073721	43074600	+	0	NA	intron (NR_102752, intron 2 of 2)	HERVH48-int|LTR|ERV1	-6721	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
133066	chr2	112415001	112415400	+	0	NA	intron (NM_005054, intron 6 of 22).3	AluY|SINE|Alu	18414	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
161313	chr3	39406101	39407430	+	0	NA	promoter-TSS (NM_001304288)	promoter-TSS (NM_001304288)	45	NM_001304288	3921		NM_002295	ENSG00000168028	RPSA	37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40|uS2	ribosomal protein SA	protein-coding
122468	chr19	49532121	49532380	+	0	NA	intron (NM_020650, intron 2 of 6)	AluY|SINE|Alu	4247	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
154574	chr22	36264901	36265100	+	0	NA	intron (NM_145343, intron 6 of 6)	AluY|SINE|Alu	11867	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
199929	chr6	127895301	127895880	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	5491	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
90577	chr17	1536601	1536800	+	0	NA	intron (NM_006224, intron 7 of 11)	AluSx1|SINE|Alu	19781	NR_028514	100306951		NR_028514	ENSG00000236618	PITPNA-AS1	-	PITPNA antisense RNA 1	ncRNA
22227	chr1	212566201	212567420	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	1476	NM_001030287	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
38514	chr11	45889551	45889850	+	0	NA	intron (NM_005456, intron 1 of 11)	MIR3|SINE|MIR	4049	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
198239	chr6	99334501	99334880	+	0	NA	intron (NR_144463, intron 3 of 5)	L2c|LINE|L2	14984	NM_032511	84553		NM_032511	ENSG00000146267	FAXC	C6orf168|dJ273F20	failed axon connections homolog, metaxin like GST domain containing	protein-coding
69055	chr14	91875221	91875900	+	0	NA	intron (NM_001384161, intron 11 of 12)	LTR78|LTR|ERV1	-8024	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
178714	chr4	152735321	152735580	+	0	NA	Intergenic	Intergenic	44280	NM_145720	201798		NM_145720	ENSG00000169989	TIGD4	-	tigger transposable element derived 4	protein-coding
45783	chr11	119306311	119307250	+	0	NA	3' UTR (NM_005188, exon 16 of 16)	3' UTR (NM_005188, exon 16 of 16)	6232	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
220534	chr8	100691601	100692730	+	0	NA	Intergenic	AluJb|SINE|Alu	10859	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
123151	chr19	52189151	52191330	+	0	NA	intron (NR_033500, intron 1 of 13)	CpG	188	NM_014225	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
96646	chr17	40610351	40611080	+	0	NA	Intergenic	Intergenic	37103	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
44468	chr11	104971071	104971630	+	0	NA	Intergenic	L1PA10|LINE|L1	-2776	NM_033306	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
113104	chr19	8286301	8286580	+	0	NA	Intergenic	AluSp|SINE|Alu	21918	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
21550	chr1	206204351	206204450	+	0	NA	promoter-TSS (NM_001317901)	promoter-TSS (NM_001317901)	-293	NM_001317901	729533		NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
44100	chr11	95816151	95816330	+	0	NA	intron (NM_014679, intron 4 of 10)	THE1C|LTR|ERVL-MaLR	25742	NM_014679	9702		NM_014679	ENSG00000166037	CEP57	MVA2|PIG8|TSP57	centrosomal protein 57	protein-coding
235225	chrX	41374171	41374580	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	40209	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
28629	chr10	58512671	58513430	+	0	NA	5' UTR (NM_001080512, exon 1 of 21)	5' UTR (NM_001080512, exon 1 of 21)	178	NM_001080512	80114		NM_025044	ENSG00000122870	BICC1	BICC|CYSRD	BicC family RNA binding protein 1	protein-coding
83212	chr16	23677171	23677530	+	0	NA	non-coding (NR_037573, exon 7 of 7)	non-coding (NR_037573, exon 7 of 7)	-1539	NM_005030	5347		NM_005030	ENSG00000166851	PLK1	PLK|STPK13	polo like kinase 1	protein-coding
86900	chr16	68059601	68060100	+	0	NA	intron (NM_017803, intron 7 of 16)	L1ME4a|LINE|L1	-25520	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
72092	chr15	28917801	28918000	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	-3737	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
184774	chr5	110734221	110734480	+	0	NA	Intergenic	Intergenic	-3795	NM_001303250	91137		NM_138773	ENSG00000164209	SLC25A46	HMSN6B|PCH1E	solute carrier family 25 member 46	protein-coding
141740	chr2	241879251	241879630	+	0	NA	Intergenic	Intergenic	-1923	NR_110220	101927289		NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
25066	chr10	3807801	3808550	+	0	NA	Intergenic	Intergenic	-22894	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
165971	chr3	108026401	108026950	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	64356	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
168089	chr3	138222751	138223100	+	0	NA	intron (NM_001267042, intron 3 of 20)	intron (NM_001267042, intron 3 of 20)	35394	NM_015396	25852		NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
23695	chr1	231558051	231558550	+	0	NA	intron (NR_028393, intron 4 of 15)	LTR41C|LTR|ERVL	29631	NM_005999	7257		NM_005999	ENSG00000116918	TSNAX	C3PO|TRAX	translin associated factor X	protein-coding
113472	chr19	9937201	9937630	+	0	NA	promoter-TSS (NM_058164)	promoter-TSS (NM_058164)	-900	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
228183	chr9	97575851	97576150	+	0	NA	intron (NM_001166116, intron 8 of 9)	L1ME3G|LINE|L1	57368	NM_139246	158427		NM_139246	ENSG00000136925	TSTD2	C9orf97	thiosulfate sulfurtransferase like domain containing 2	protein-coding
236858	chrX	79373201	79373400	+	0	NA	Intergenic	Intergenic	-5748	NM_001171581	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
134556	chr2	144162621	144162930	+	0	NA	intron (NM_001284234, intron 2 of 9)	intron (NM_001284234, intron 2 of 9)	74564	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
146578	chr20	50089601	50090000	+	0	NA	intron (NM_001257394, intron 1 of 2)	intron (NM_001257394, intron 1 of 2)	23350	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
29414	chr10	70175271	70175430	+	0	NA	Intergenic	AluJr4|SINE|Alu	-4836	NM_020150	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
225108	chr9	33450951	33451450	+	0	NA	Intergenic	Intergenic	-3607	NM_001318144	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
58684	chr12	132546601	132547000	+	0	NA	intron (NM_001382740, intron 4 of 11)	intron (NM_001382740, intron 4 of 11)	-35197	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
106990	chr18	32033301	32033500	+	0	NA	intron (NM_017831, intron 1 of 5)	AluSx|SINE|Alu	14575	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
120510	chr19	44812821	44814350	+	0	NA	exon (NM_005581, exon 6 of 15)	exon (NM_005581, exon 6 of 15)	4482	NM_005581	4059		NM_005581	ENSG00000187244	BCAM	AU|B-CAM|CD239|F8/G253|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
97708	chr17	44329001	44329400	+	0	NA	Intergenic	Intergenic	-4330	NM_001321240	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
133098	chr2	112626601	112627550	+	0	NA	Intergenic	Intergenic	17105	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
122496	chr19	49571321	49572150	+	0	NA	intron (NM_001270960, intron 1 of 8)	AluSc|SINE|Alu	8821	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
23660	chr1	231162151	231162880	+	0	NA	promoter-TSS (NM_001004342)	promoter-TSS (NM_001004342)	-413	NM_001300889	440730		NM_001004342	ENSG00000119283	TRIM67	TNL	tripartite motif containing 67	protein-coding
27346	chr10	30683771	30684130	+	0	NA	Intergenic	Intergenic	-8324	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
24810	chr10	178221	178650	+	0	NA	intron (NM_001370102, intron 1 of 14)	intron (NM_001370102, intron 1 of 14)	-1559	NM_001202467	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
31402	chr10	95363251	95363650	+	0	NA	intron (NM_001377203, intron 18 of 27)	intron (NM_001377203, intron 18 of 27)	-72447	NM_020992	9124		NM_020992	ENSG00000107438	PDLIM1	CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1	PDZ and LIM domain 1	protein-coding
151741	chr22	17780121	17780730	+	0	NA	TTS (NR_103718)	TTS (NR_103718)	3135	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
78175	chr15	90533101	90533530	+	0	NA	intron (NM_001042574, intron 1 of 14)	AluY|SINE|Alu	3392	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
199194	chr6	111779351	111779450	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-19483	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
50392	chr12	47275351	47275650	+	0	NA	Intergenic	AluSx1|SINE|Alu	31899	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
221113	chr8	118100951	118101250	+	0	NA	intron (NM_000127, intron 1 of 10)	MIRc|SINE|MIR	10726	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
173278	chr4	7057071	7057430	+	0	NA	3' UTR (NM_152293, exon 2 of 2)	3' UTR (NM_152293, exon 2 of 2)	10814	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
104443	chr17	81088001	81088200	+	0	NA	intron (NM_001385147, intron 5 of 12)	intron (NM_001385147, intron 5 of 12)	4561	NM_001385156	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
20531	chr1	198688451	198688930	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	49650	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
161019	chr3	37864871	37865030	+	0	NA	intron (NM_005808, intron 1 of 6)	MIRb|SINE|MIR	3070	NM_001008392	10217		NM_005808	ENSG00000144677	CTDSPL	C3orf8|HYA22|PSR1|RBSP3|SCP3	CTD small phosphatase like	protein-coding
186476	chr5	138034771	138035250	+	0	NA	intron (NR_037900, intron 1 of 1)	AluJb|SINE|Alu	-1897	NM_001101800	51306		NM_016603	ENSG00000031003	FAM13B	ARHGAP49|C5orf5|FAM13B1|KHCHP|N61	family with sequence similarity 13 member B	protein-coding
105045	chr17	82063321	82063630	+	0	NA	exon (NM_022156, exon 4 of 14)	exon (NM_022156, exon 4 of 14)	2329	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
113565	chr19	10254971	10255300	+	0	NA	intron (NM_146387, intron 5 of 9)	L2b|LINE|L2	2921	NM_015956	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
95062	chr17	32692221	32692550	+	0	NA	intron (NM_015194, intron 16 of 21)	intron (NM_015194, intron 16 of 21)	184739	NM_015194	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
131162	chr2	91527571	91528130	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	132099	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
63086	chr13	113211071	113211230	+	0	NA	intron (NM_003589, intron 2 of 19)	L1ME1|LINE|L1	1537	NM_001008895	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
46207	chr11	123559851	123560750	+	0	NA	promoter-TSS (NM_001286564)	promoter-TSS (NM_001286564)	38	NM_001286564	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
207750	chr7	48107071	48107430	+	0	NA	intron (NM_001287426, intron 8 of 9)	intron (NM_001287426, intron 8 of 9)	17985	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
164707	chr3	67737901	67738500	+	0	NA	intron (NR_109992, intron 3 of 6)	MER1B|DNA|hAT-Charlie	83503	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
184673	chr5	108146401	108146800	+	0	NA	intron (NM_001163315, intron 6 of 8)	intron (NM_001163315, intron 6 of 8)	235498	NM_001163315	64839		NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
229090	chr9	114371671	114372600	+	0	NA	intron (NM_001317952, intron 3 of 20)	intron (NM_001317952, intron 3 of 20)	15847	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
174309	chr4	38582901	38583330	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	19112	NR_146991	105374411		NR_146991		LINC02278	-	long intergenic non-protein coding RNA 2278	ncRNA
106646	chr18	22873121	22873380	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-60078	NM_002894	5932		NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JAWAD|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding
122837	chr19	50431221	50433030	+	0	NA	promoter-TSS (NM_004533)	promoter-TSS (NM_004533)	-767	NM_004533	4606		NM_004533	ENSG00000086967	MYBPC2	MYBPC|MYBPCF|fsMyBP-C	myosin binding protein C2	protein-coding
1847	chr1	6294701	6295450	+	0	NA	intron (NM_007274, intron 6 of 8)	intron (NM_007274, intron 6 of 8)	-33977	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
206140	chr7	27745001	27745400	+	0	NA	intron (NM_006024, intron 1 of 16)	intron (NM_006024, intron 1 of 16)	5105	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
73077	chr15	40927051	40927150	+	0	NA	Intergenic	CpG	-2240	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
63273	chr13	113959971	113960600	+	0	NA	intron (NM_001365455, intron 6 of 6)	MER101-int|LTR|ERV1	13791	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
19499	chr1	175174301	175175100	+	0	NA	intron (NM_001319230, intron 1 of 2)	intron (NM_001319230, intron 1 of 2)	18076	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
170807	chr3	189172771	189173130	+	0	NA	intron (NM_198485, intron 1 of 5)	intron (NM_198485, intron 1 of 5)	979	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
139376	chr2	221568101	221568300	+	0	NA	intron (NM_001304537, intron 1 of 16)	intron (NM_001304537, intron 1 of 16)	4104	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
194898	chr6	34692051	34692350	+	0	NA	intron (NM_022758, intron 1 of 3)	AluJo|SINE|Alu	-3954	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
83724	chr16	28549151	28549800	+	0	NA	Intergenic	Intergenic	-4445	NM_138414	112869		NM_138414	ENSG00000176476	SGF29	CCDC101|STAF36|TDRD29	SAGA complex associated factor 29	protein-coding
37241	chr11	14569301	14570050	+	0	NA	intron (NM_148976, intron 2 of 10)	L1P2|LINE|L1	-49230	NM_001143937	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
87526	chr16	71897871	71898580	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluSx1|SINE|Alu	2694	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
4570	chr1	22059621	22060600	+	0	NA	intron (NM_044472, intron 1 of 5)	AluSx|SINE|Alu	7401	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
65680	chr14	52694421	52695200	+	0	NA	intron (NM_001382467, intron 1 of 14)	intron (NM_001382467, intron 1 of 14)	748	NM_001382476	30001		NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
120767	chr19	45429671	45429830	+	0	NA	intron (NM_001369412, intron 1 of 9)	intron (NM_001369412, intron 1 of 9)	-5833	NM_001369408	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
13779	chr1	117339921	117340330	+	0	NA	Intergenic	Intergenic	-27324	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
125439	chr2	12007901	12008100	+	0	NA	intron (NR_110196, intron 2 of 5)	MIRb|SINE|MIR	884	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
97342	chr17	43281021	43281380	+	0	NA	Intergenic	AluSp|SINE|Alu	-3032	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
114114	chr19	11136501	11136900	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	19082	NM_001317033								
154194	chr22	31348571	31348730	+	0	NA	non-coding (NR_120386, exon 1 of 1)	non-coding (NR_120386, exon 1 of 1)	1891	NR_120386	54944		NM_017834		LINC01521	-	long intergenic non-protein coding RNA 1521	ncRNA
23593	chr1	229715021	229715280	+	0	NA	Intergenic	MER66C|LTR|ERV1	88903	NM_014777	9816		NM_014777	ENSG00000135763	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis homolog	protein-coding
39379	chr11	59781651	59781750	+	0	NA	intron (NM_004177, intron 2 of 10)	intron (NM_004177, intron 2 of 10)	26324	NM_001178040	6809		NM_004177	ENSG00000166900	STX3	DIAR12|MVID2|RDMVID|STX3A	syntaxin 3	protein-coding
11782	chr1	92484341	92485400	+	0	NA	promoter-TSS (NM_001127215)	promoter-TSS (NM_001127215)	-916	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
35753	chr11	2142871	2143250	+	0	NA	intron (NR_133657, intron 1 of 2)	intron (NR_133657, intron 1 of 2)	-2117	NM_001291862	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
235838	chrX	49840771	49841030	+	0	NA	Intergenic	Intergenic	11597	NM_007003	9506		NM_007003	ENSG00000101951	PAGE4	CT16.7|GAGE-9|GAGEC1|JM-27|JM27|PAGE-1|PAGE-4	PAGE family member 4	protein-coding
140452	chr2	233159771	233160130	+	0	NA	intron (NM_001017915, intron 10 of 26).2	intron (NM_001017915, intron 10 of 26).2	-91621	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
117928	chr19	33119001	33119530	+	0	NA	intron (NR_135270, intron 18 of 20)	intron (NR_135270, intron 18 of 20)	-12849	NR_135565	126248		NM_173479	ENSG00000166359	WDR88	PQWD	WD repeat domain 88	protein-coding
164050	chr3	53581871	53582030	+	0	NA	intron (NM_001128839, intron 3 of 45)	intron (NM_001128839, intron 3 of 45)	87339	NM_001128839	776		NM_000720	ENSG00000157388	CACNA1D	CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD	calcium voltage-gated channel subunit alpha1 D	protein-coding
137009	chr2	190648211	190650100	+	0	NA	promoter-TSS (NM_001321312)	promoter-TSS (NM_001321312)	72	NM_001321312	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
207007	chr7	38355801	38356000	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	14323	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
168910	chr3	152334871	152335750	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	5680	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
230951	chr9	129421801	129422000	+	0	NA	Intergenic	Intergenic	-66760	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
200564	chr6	136278371	136278530	+	0	NA	exon (NM_001077440, exon 4 of 12)	exon (NM_001077440, exon 4 of 12)	11396	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
3839	chr1	16908901	16909300	+	0	NA	Intergenic	Intergenic	-12831	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
212266	chr7	123493501	123493700	+	0	NA	intron (NM_178827, intron 7 of 12)	L1ME2z|LINE|L1	39348	NM_001321293	154865		NM_178827	ENSG00000164675	IQUB	TRS4	IQ motif and ubiquitin domain containing	protein-coding
217584	chr8	29523851	29524550	+	0	NA	Intergenic	Intergenic	-173516	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
25914	chr10	11307921	11308180	+	0	NA	intron (NM_001326330, intron 9 of 12)	L1M4b|LINE|L1	36624	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
185912	chr5	132821601	132822250	+	0	NA	TTS (NM_001172700)	TTS (NM_001172700)	4385	NM_133456	134549		NM_133456	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
8448	chr1	40689851	40689950	+	0	NA	non-coding (NR_024567, exon 1 of 1)	non-coding (NR_024567, exon 1 of 1)	-1804	NM_001142588	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
179624	chr4	186105471	186106080	+	0	NA	intron (NM_001367768, intron 1 of 13)	intron (NM_001367768, intron 1 of 13)	1071	NM_001367768	25854		NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
188208	chr5	150699301	150699500	+	0	NA	intron (NM_018047, intron 2 of 10)	intron (NM_018047, intron 2 of 10)	1662	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
138666	chr2	212961321	212961580	+	0	NA	Intergenic	Intergenic	-35114	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
76852	chr15	77887871	77888030	+	0	NA	Intergenic	Intergenic	38896	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
102438	chr17	75678201	75678400	+	0	NA	intron (NR_126036, intron 3 of 9)	MER2|DNA|TcMar-Tigger	10962	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
51294	chr12	51243601	51244000	+	0	NA	TTS (NM_001031628)	TTS (NM_001031628)	4974	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
146166	chr20	48730301	48730680	+	0	NA	intron (NM_020820, intron 4 of 39)	L1ME3|LINE|L1	97509	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
161980	chr3	46348851	46349300	+	0	NA	Intergenic	Intergenic	-4669	NM_001123041	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
185283	chr5	126445351	126445850	+	0	NA	intron (NR_146195, intron 1 of 15)	intron (NR_146195, intron 1 of 15)	-19550	NM_001146322	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
238160	chrX	136797951	136798050	+	0	NA	Intergenic	L2|LINE|L2	-17068	NM_004840	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
230601	chr9	128590651	128591150	+	0	NA	intron (NM_001375310, intron 21 of 57)	MER3|DNA|hAT-Charlie	38313	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
147401	chr20	58810321	58810580	+	0	NA	Intergenic	Intergenic	7244	NR_029844	407022		NR_029844	ENSG00000284040	MIR296	MIRN296|miRNA296|mir-296	microRNA 296	ncRNA
77691	chr15	85646311	85647700	+	0	NA	intron (NM_007200, intron 10 of 36)	intron (NM_007200, intron 10 of 36)	27055	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
230865	chr9	129166871	129167780	+	0	NA	Intergenic	MIRb|SINE|MIR	10936	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
237902	chrX	131763701	131763950	+	0	NA	intron (NR_152876, intron 5 of 9)	intron (NR_152876, intron 5 of 9)	66818	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
143220	chr20	24967701	24967900	+	0	NA	intron (NM_020531, intron 8 of 8)	intron (NM_020531, intron 8 of 8)	18531	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
202109	chr6	154747371	154747880	+	0	NA	intron (NM_001286189, intron 3 of 21)	intron (NM_001286189, intron 3 of 21)	14209	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
89745	chr16	89440621	89441600	+	0	NA	intron (NR_110932, intron 1 of 2)	AluY|SINE|Alu	10192	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
132107	chr2	101402751	101402850	+	0	NA	intron (NM_001367508, intron 11 of 12)	intron (NM_001367508, intron 11 of 12)	-15297	NM_153836	200407		NM_153836	ENSG00000175874	CREG2	-	cellular repressor of E1A stimulated genes 2	protein-coding
109452	chr19	756101	756900	+	0	NA	intron (NR_135168, intron 1 of 3)	MLT1K|LTR|ERVL-MaLR	5388	NR_135168	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
54629	chr12	92757651	92757960	+	0	NA	intron (NM_001377329, intron 13 of 16)	intron (NM_001377329, intron 13 of 16)	54816	NM_001377329	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
171732	chr3	197955921	197956200	+	0	NA	3' UTR (NM_001316311, exon 5 of 5)	3' UTR (NM_001316311, exon 5 of 5)	3931	NM_032263	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
198987	chr6	110901721	110902130	+	0	NA	Intergenic	AluSz|SINE|Alu	27141	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
119818	chr19	41349601	41350380	+	0	NA	intron (NM_000660, intron 1 of 6)	AluJr|SINE|Alu	3932	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
159898	chr3	16900001	16900200	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	15145	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
15999	chr1	151992861	151994880	+	0	NA	promoter-TSS (NM_002966)	promoter-TSS (NM_002966)	-11	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
11991	chr1	94855651	94855750	+	0	NA	intron (NR_146575, intron 9 of 14)	intron (NR_146575, intron 9 of 14)	31207	NM_001350223	126969		NM_152369	ENSG00000143036	SLC44A3	CTL3	solute carrier family 44 member 3	protein-coding
93438	chr17	18634751	18635280	+	0	NA	TTS (NM_001039397)	TTS (NM_001039397)	-9398	NR_036647	284047		NR_036647	ENSG00000291090	CCDC144BP	CCDC144B	coiled-coil domain containing 144B, pseudogene	pseudo
206293	chr7	30098451	30098550	+	0	NA	intron (NM_001350973, intron 13 of 13)	L1PA4|LINE|L1	-36486	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
201766	chr6	149948271	149948500	+	0	NA	intron (NM_025217, intron 4 of 4)	MamGypsy2-LTR|LTR|Gypsy	6371	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
36027	chr11	2919101	2919300	+	0	NA	intron (NM_183233, intron 7 of 10)	MLT1K|LTR|ERVL-MaLR	10220	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
232735	chr9	136630221	136630750	+	0	NA	Intergenic	Intergenic	-13304	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
237652	chrX	124262701	124262900	+	0	NA	Intergenic	Intergenic	-69860	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
169249	chr3	157154701	157155500	+	0	NA	intron (NM_001308185, intron 3 of 10)	intron (NM_001308185, intron 3 of 10)	5047	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
176520	chr4	95165951	95166250	+	0	NA	3' UTR (NM_003728, exon 16 of 16)	3' UTR (NM_003728, exon 16 of 16)	74609	NM_001256794	658		NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMD3|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
179723	chr5	186621	187050	+	0	NA	3' UTR (NM_052909, exon 20 of 20)	3' UTR (NM_052909, exon 20 of 20)	-4660	NM_001080478	389257		NM_001080478	ENSG00000185028	LRRC14B	-	leucine rich repeat containing 14B	protein-coding
32134	chr10	101239601	101240130	+	0	NA	Intergenic	Intergenic	10271	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
152388	chr22	20530471	20530830	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	22603	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
220582	chr8	100834221	100834680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-112362	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
153221	chr22	23956371	23956900	+	0	NA	TTS (NR_126445)	TTS (NR_126445)	4560	NM_001080843	653689		NM_001080843	ENSG00000133433	GSTT2B	GSTT2P	glutathione S-transferase theta 2B	protein-coding
67216	chr14	68942601	68943000	+	0	NA	intron (NM_001130004, intron 1 of 21)	L1M5|LINE|L1	36502	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
57359	chr12	121781251	121781350	+	0	NA	3' UTR (NM_001080825, exon 12 of 12)	3' UTR (NM_001080825, exon 12 of 12)	12388	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
191917	chr6	15451971	15452480	+	0	NA	intron (NM_001267040, intron 4 of 17)	intron (NM_001267040, intron 4 of 17)	203370	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
104365	chr17	81001321	81001780	+	0	NA	Intergenic	Intergenic	9709	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
173013	chr4	4396121	4396800	+	0	NA	intron (NR_167933, intron 3 of 5)	intron (NR_167933, intron 3 of 5)	9358	NM_001382227	27065		NM_014392	ENSG00000168824	NSG1	D4S234|D4S234E|NEEP21|P21	neuronal vesicle trafficking associated 1	protein-coding
107204	chr18	36068651	36068950	+	0	NA	Intergenic	L1ME3G|LINE|L1	-1206	NM_001303413	55197		NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
126459	chr2	28350651	28350950	+	0	NA	Intergenic	Intergenic	-40341	NR_038319	100505716		NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
66413	chr14	61514551	61514650	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	55594	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
182622	chr5	66596971	66597350	+	0	NA	intron (NM_198828, intron 1 of 5)	CpG	767	NM_001164664	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
157400	chr22	44820251	44820830	+	0	NA	intron (NM_181335, intron 5 of 11)	intron (NM_181335, intron 5 of 11)	67965	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
9856	chr1	54282171	54282530	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	45907	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
85697	chr16	56518651	56518830	+	0	NA	intron (NR_165297, intron 1 of 16)	intron (NR_165297, intron 1 of 16)	1284	NR_165297	583		NM_031885	ENSG00000125124	BBS2	BBS|RP74	Bardet-Biedl syndrome 2	protein-coding
1995	chr1	6703121	6703380	+	0	NA	Intergenic	Intergenic	-1434	NM_018198	55735		NM_018198	ENSG00000007923	DNAJC11	dJ126A5.1	DnaJ heat shock protein family (Hsp40) member C11	protein-coding
102867	chr17	76507651	76507750	+	0	NA	Intergenic	AluJo|SINE|Alu	-6273	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
232869	chr9	136812571	136812930	+	0	NA	intron (NM_024718, intron 1 of 14)	intron (NM_024718, intron 1 of 14)	-3902	NR_024580	100131193		NR_024580	ENSG00000228544	CCDC183-AS1	KIAA1984-AS1	CCDC183 antisense RNA 1	ncRNA
196670	chr6	44430871	44431430	+	0	NA	intron (NM_001253, intron 14 of 15)	intron (NM_001253, intron 14 of 15)	-4491	NR_039785	100616352		NR_039785	ENSG00000266619	MIR4642	-	microRNA 4642	ncRNA
24684	chr1	247204901	247205950	+	0	NA	Intergenic	AluSp|SINE|Alu	-3365	NR_037480	100500849		NR_037480	ENSG00000283881	MIR3916	mir-3916	microRNA 3916	ncRNA
159866	chr3	16796801	16797050	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-88030	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
200105	chr6	130196001	130196400	+	0	NA	intron (NM_001258275, intron 7 of 13)	HERVH-int|LTR|ERV1	19685	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
58810	chr12	132810371	132810750	+	0	NA	intron (NM_005895, intron 4 of 23)	LTR13|LTR|ERVK	17829	NM_005895	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
79137	chr16	232101	232500	+	0	NA	Intergenic	AluSp|SINE|Alu	-2246	NR_104317	83986		NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding
74826	chr15	63491471	63491630	+	0	NA	Intergenic	Intergenic	-12961	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
44527	chr11	107856001	107856750	+	0	NA	intron (NM_017515, intron 1 of 7)	MIR|SINE|MIR	2412	NM_017515	54733		NM_017515	ENSG00000110660	SLC35F2	HSNOV1	solute carrier family 35 member F2	protein-coding
230739	chr9	128863451	128864350	+	0	NA	intron (NM_001352995, intron 1 of 14)	intron (NM_001352995, intron 1 of 14)	-3368	NR_148225	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
568	chr1	1265021	1266080	+	0	NA	intron (NM_194315, intron 2 of 7)	intron (NM_194315, intron 2 of 7)	8304	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
100737	chr17	63915301	63915700	+	0	NA	Intergenic	Intergenic	3339	NM_022560	2688		NM_000515	ENSG00000259384	GH1	GH|GH-N|GHB5|GHN|IGHD1A|IGHD1B|IGHD2|hGH-N	growth hormone 1	protein-coding
173319	chr4	7524301	7524900	+	0	NA	intron (NM_020777, intron 2 of 26)	intron (NM_020777, intron 2 of 26)	64572	NR_036238	100422826		NR_036238	ENSG00000266690	MIR4274	-	microRNA 4274	ncRNA
194354	chr6	32945271	32945700	+	0	NA	Intergenic	Intergenic	-4457	NM_002118	3109		NM_002118	ENSG00000242574	HLA-DMB	D6S221E|RING7	major histocompatibility complex, class II, DM beta	protein-coding
18444	chr1	161526051	161526430	+	0	NA	exon (NM_002155, exon 1 of 1)	exon (NM_002155, exon 1 of 1)	1700	NM_002155	3310		NM_002155	ENSG00000173110	HSPA6	HSP70B'	heat shock protein family A (Hsp70) member 6	protein-coding
84403	chr16	30339751	30340050	+	0	NA	Intergenic	Intergenic	-4526	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
176377	chr4	88598271	88599080	+	0	NA	intron (NM_001375479, intron 3 of 25)	MIRb|SINE|MIR	6195	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
235467	chrX	46587201	46587800	+	0	NA	intron (NM_019886, intron 1 of 1)	intron (NM_019886, intron 1 of 1)	13735	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
201798	chr6	149990421	149992180	+	0	NA	Intergenic	LTR19C|LTR|ERV1	13844	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
105469	chr17	83061421	83061680	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-9740	NM_001009905	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
169027	chr3	152471171	152471330	+	0	NA	Intergenic	Intergenic	-130260	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
166779	chr3	122478571	122478730	+	0	NA	intron (NM_002264, intron 2 of 13)	AluSg|SINE|Alu	36289	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
75233	chr15	64864901	64865880	+	0	NA	exon (NM_025201, exon 6 of 6)	exon (NM_025201, exon 6 of 6)	23475	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
65037	chr14	39180851	39182100	+	0	NA	exon (NM_002687, exon 9 of 9)	exon (NM_002687, exon 9 of 9)	6221	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
120048	chr19	41995531	41996450	+	0	NA	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	-1760	NM_152296	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
163717	chr3	52298301	52298700	+	0	NA	Intergenic	Intergenic	-4192	NR_029677	406925		NR_029677	ENSG00000207926	MIR135A1	MIRN135-1|MIRN135A1|mir-135a-1	microRNA 135a-1	ncRNA
116433	chr19	18019851	18020200	+	0	NA	Intergenic	Intergenic	11855	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
87082	chr16	68446421	68446850	+	0	NA	intron (NM_018667, intron 1 of 8)	(CA)n|Simple_repeat|Simple_repeat	1873	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
163689	chr3	52251851	52251950	+	0	NA	Intergenic	Intergenic	5733	NM_001122870	132160		NM_144641	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein-coding
137303	chr2	195657901	195658600	+	0	NA	intron (NM_020342, intron 1 of 9)	intron (NM_020342, intron 1 of 9)	1024	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
88166	chr16	81704151	81705300	+	0	NA	intron (NM_030629, intron 18 of 20)	intron (NM_030629, intron 18 of 20)	39371	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
65814	chr14	54878501	54878700	+	0	NA	promoter-TSS (NR_036194)	promoter-TSS (NR_036194)	-407	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
91200	chr17	3907401	3907980	+	0	NA	intron (NM_002558, intron 1 of 11)	intron (NM_002558, intron 1 of 11)	8775	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
10467	chr1	66334351	66334730	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	2432	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
154929	chr22	37212451	37212850	+	0	NA	promoter-TSS (NM_001051)	promoter-TSS (NM_001051)	-173	NM_001051	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
31970	chr10	100740901	100741300	+	0	NA	intron (NM_001374303, intron 1 of 2)	intron (NM_001374303, intron 1 of 2)	-4482	NM_003987	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
199574	chr6	118903071	118903830	+	0	NA	intron (NM_014034, intron 2 of 3)	L2c|LINE|L2	9298	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
114636	chr19	12994951	12996450	+	0	NA	5' UTR (NM_001365982, exon 1 of 9)	5' UTR (NM_001365982, exon 1 of 9)	225	NM_001365902	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
36199	chr11	3418421	3418980	+	0	NA	Intergenic	Intergenic	-26785	NR_044999	10821		NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
236394	chrX	71110671	71110850	+	0	NA	intron (NM_000206, intron 2 of 7)	intron (NM_000206, intron 2 of 7)	817	NM_000206	3561		NM_000206	ENSG00000147168	IL2RG	CD132|CIDX|IL-2RG|IMD4|P64|SCIDX|SCIDX1	interleukin 2 receptor subunit gamma	protein-coding
214130	chr7	144286921	144288330	+	0	NA	intron (NR_126022, intron 3 of 4).3	intron (NR_126022, intron 3 of 4).3	-1622	NR_033942	728377		NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor 34, pseudogene	pseudo
208800	chr7	73608151	73608250	+	0	NA	intron (NR_134541, intron 2 of 15)	intron (NR_134541, intron 2 of 15)	16322	NM_032953	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
86472	chr16	66953751	66954500	+	0	NA	Intergenic	Intergenic	-7141	NM_001185177	23491		NM_012122	ENSG00000172828	CES3	ES31	carboxylesterase 3	protein-coding
163560	chr3	51734871	51735030	+	0	NA	Intergenic	L1MCa|LINE|L1	27882	NM_001349117	2912		NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate metabotropic receptor 2	protein-coding
97035	chr17	42315361	42316430	+	0	NA	intron (NM_001369519, intron 23 of 23)	intron (NM_001369519, intron 23 of 23)	27839	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
149737	chr21	34384021	34384380	+	0	NA	intron (NM_058182, intron 2 of 3).2	intron (NM_058182, intron 2 of 3).2	8693	NM_058182	54065		NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B|SMIM11A|SMIM11B	small integral membrane protein 11	protein-coding
212298	chr7	124032621	124033080	+	0	NA	exon (NM_001136002, exon 1 of 1)	exon (NM_001136002, exon 1 of 1)	217	NM_001136002	730130		NM_001136002	ENSG00000234224	TMEM229A	-	transmembrane protein 229A	protein-coding
70248	chr14	101562821	101563080	+	0	NA	3' UTR (NM_001362, exon 1 of 1)	3' UTR (NM_001362, exon 1 of 1)	1599	NM_001362	1735		NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	iodothyronine deiodinase 3	protein-coding
193780	chr6	31370171	31370530	+	0	NA	Intergenic	L1P3|LINE|L1	-13171	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
63522	chr13	114318221	114318950	+	0	NA	intron (NM_001164145, intron 1 of 2)	AluJb|SINE|Alu	4082	NM_001164144	283489		NM_032436	ENSG00000198824	CHAMP1	C13orf8|CAMP|CHAMP|MRD40|NEDHILD|ZNF828	chromosome alignment maintaining phosphoprotein 1	protein-coding
146198	chr20	48773251	48773580	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	54584	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
38773	chr11	47174821	47175080	+	0	NA	intron (NM_001242832, intron 4 of 14)	intron (NM_001242832, intron 4 of 14)	1929	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
131495	chr2	96529621	96530330	+	0	NA	intron (NR_135564, intron 1 of 2)	intron (NR_135564, intron 1 of 2)	2331	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
138698	chr2	213102851	213103150	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	47437	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
227356	chr9	89475271	89475680	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	4415	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
231383	chr9	130705551	130705850	+	0	NA	TTS (NM_001282708)	TTS (NM_001282708)	-8181	NM_007313	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
206415	chr7	32497101	32498300	+	0	NA	intron (NM_015060, intron 1 of 15)	AluYk3|SINE|Alu	2211	NM_015060	23080		NM_015060	ENSG00000105778	AVL9	KIAA0241	AVL9 cell migration associated	protein-coding
140920	chr2	237712851	237713300	+	0	NA	intron (NM_001137551, intron 2 of 11)	L4_B_Mam|LINE|RTE-X	20870	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
215197	chr7	155791821	155792530	+	0	NA	Intergenic	Intergenic	16988	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
30616	chr10	80203051	80204020	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	956	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
20707	chr1	200671971	200672630	+	0	NA	intron (NR_110787, intron 1 of 2)	AluJb|SINE|Alu	-2302	NM_001349803	83479		NM_031306	ENSG00000118197	DDX59	OFD5|ZNHIT5	DEAD-box helicase 59	protein-coding
72174	chr15	29134421	29135080	+	0	NA	intron (NM_015307, intron 7 of 10)	intron (NM_015307, intron 7 of 10)	64092	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
133475	chr2	119862351	119862800	+	0	NA	exon (NM_002830, exon 3 of 27)	exon (NM_002830, exon 3 of 27)	102653	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
107810	chr18	51195421	51196300	+	0	NA	intron (NM_016626, intron 1 of 1)	intron (NM_016626, intron 1 of 1)	1821	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
47988	chr12	6909701	6910600	+	0	NA	intron (NM_006992, intron 6 of 6)	intron (NM_006992, intron 6 of 6)	-4430	NM_001975	2026		NM_001975	ENSG00000111674	ENO2	HEL-S-279|NSE	enolase 2	protein-coding
108384	chr18	69662171	69662330	+	0	NA	intron (NM_152721, intron 3 of 7)	AluSx1|SINE|Alu	192319	NR_134579	105372179		NR_134579	ENSG00000293054	LOC105372179	-	uncharacterized LOC105372179	ncRNA
86734	chr16	67607971	67608730	+	0	NA	intron (NM_001191022, intron 2 of 9)	intron (NM_001191022, intron 2 of 9)	-36794	NM_001317026	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
169276	chr3	158097001	158097200	+	0	NA	3' UTR (NM_006884, exon 5 of 5)	3' UTR (NM_006884, exon 5 of 5)	9063	NM_006884	6474		NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	SHOX homeobox 2	protein-coding
53510	chr12	66713271	66713630	+	0	NA	intron (NM_001379351, intron 1 of 22)	MER5A1|DNA|hAT-Charlie	-34374	NM_001178074	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
83043	chr16	22321151	22321980	+	0	NA	intron (NM_018119, intron 13 of 20).2	intron (NM_018119, intron 13 of 20).2	24156	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
52685	chr12	56468031	56469780	+	0	NA	intron (NM_207344, intron 1 of 1)	intron (NM_207344, intron 1 of 1)	327	NM_207344	283377		NM_207344	ENSG00000176422	SPRYD4	-	SPRY domain containing 4	protein-coding
217036	chr8	23251571	23251730	+	0	NA	intron (NM_001363183, intron 2 of 8)	intron (NM_001363183, intron 2 of 8)	5009	NM_001317899	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
101314	chr17	66547051	66547500	+	0	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-130421	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
170082	chr3	182977201	182977400	+	0	NA	intron (NM_001308101, intron 1 of 6)	MIR3|SINE|MIR	3238	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
38253	chr11	36509761	36510780	+	0	NA	promoter-TSS (NM_001377280)	promoter-TSS (NM_001377280)	2	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
47239	chr12	1084851	1084950	+	0	NA	intron (NM_178039, intron 3 of 17)	AluJr4|SINE|Alu	57152	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
36397	chr11	4065871	4066380	+	0	NA	intron (NR_168438, intron 5 of 9)	intron (NR_168438, intron 5 of 9)	-28560	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
177250	chr4	108762601	108763030	+	0	NA	5' UTR (NM_001331031, exon 1 of 13)	5' UTR (NM_001331031, exon 1 of 13)	238	NM_001331032	64850		NM_031279	ENSG00000164089	ETNPPL	AGXT2L1	ethanolamine-phosphate phospho-lyase	protein-coding
238313	chrX	149509771	149509930	+	0	NA	Intergenic	Intergenic	-4544	NM_001166550	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
223513	chr8	144101251	144101950	+	0	NA	intron (NM_030974, intron 2 of 8)	AluY|SINE|Alu	2173	NR_038270	81858		NM_030974	ENSG00000179526	SHARPIN	AIFID|SIPL1	SHANK associated RH domain interactor	protein-coding
206688	chr7	36502601	36502800	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	97420	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
74051	chr15	52496051	52496350	+	0	NA	intron (NM_000259, intron 1 of 40)	MLT1O|LTR|ERVL-MaLR	32680	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
66849	chr14	64973471	64974100	+	0	NA	intron (NM_001202559, intron 3 of 13)	AluSq2|SINE|Alu	-1449	NM_001330182	376267		NM_198686	ENSG00000139998	RAB15	-	RAB15, member RAS oncogene family	protein-coding
150921	chr21	44238951	44239250	+	0	NA	intron (NM_001365759, intron 1 of 6)	intron (NM_001365759, intron 1 of 6)	1843	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
226020	chr9	41741351	41741450	+	0	NA	Intergenic	LTR46|LTR|ERV1	-42399	NR_135136	105376064		NR_135136	ENSG00000275239	FAM242F	-	family with sequence similarity 242 member F	ncRNA
187388	chr5	141879001	141880850	+	0	NA	Intergenic	Intergenic	-1515	NM_002587	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
109920	chr19	1297301	1297900	+	0	NA	intron (NM_001405, intron 2 of 3)	intron (NM_001405, intron 2 of 3)	11727	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
158434	chr22	50581701	50583600	+	0	NA	promoter-TSS (NR_021492)	promoter-TSS (NR_021492)	199	NM_005198	1120		NM_005198	ENSG00000100288	CHKB	CHETK|CHKL|CK|CKB|CKEKB|EK|EKB|MDCMC	choline kinase beta	protein-coding
195873	chr6	41562321	41563380	+	0	NA	intron (NM_138457, intron 1 of 16)	intron (NM_138457, intron 1 of 16)	-14229	NR_126415	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
182400	chr5	61330371	61331200	+	0	NA	Intergenic	CpG	-1473	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
157622	chr22	46068871	46069250	+	0	NA	intron (NR_148973, intron 1 of 1)	intron (NR_148973, intron 1 of 1)	1961	NR_148973	642648		NR_148973		LINC02939	-	long intergenic non-protein coding RNA 2939	ncRNA
108230	chr18	63198721	63199050	+	0	NA	intron (NM_000633, intron 2 of 2)	(AC)n|Simple_repeat|Simple_repeat	120884	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
234731	chrX	21942751	21943050	+	0	NA	intron (NM_004595, intron 1 of 10)	AluSz|SINE|Alu	2191	NM_004595	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
13217	chr1	112660521	112660780	+	0	NA	intron (NM_006135, intron 7 of 9)	intron (NM_006135, intron 7 of 9)	-13662	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
9598	chr1	52296351	52296830	+	0	NA	intron (NM_004799, intron 12 of 18)	L1M4a2|LINE|L1	69615	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
136718	chr2	181172701	181172900	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	48963	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
58458	chr12	132094271	132095030	+	0	NA	intron (NR_003290, intron 3 of 9)	intron (NR_003290, intron 3 of 9)	10367	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
233251	chr9	137272371	137273180	+	0	NA	intron (NM_015456, intron 12 of 12)	CpG	-4951	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
111165	chr19	3339771	3339930	+	0	NA	Intergenic	Intergenic	-19780	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
61790	chr13	75322371	75322730	+	0	NA	intron (NM_014832, intron 11 of 20)	intron (NM_014832, intron 11 of 20)	81962	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
196124	chr6	42394201	42394500	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	57701	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
203778	chr7	1233601	1234100	+	0	NA	intron (NM_001080461, intron 2 of 2)	CpG-25321	978	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
128362	chr2	54999301	54999500	+	0	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	10872	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133562	chr2	121356171	121356330	+	0	NA	intron (NM_001142274, intron 35 of 37)	intron (NM_001142274, intron 35 of 37)	-71048	NM_014553	29842		NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
102361	chr17	75515091	75517300	+	0	NA	promoter-TSS (NM_020753)	promoter-TSS (NM_020753)	-333	NM_207346	283989		NM_207346	ENSG00000182173	TSEN54	PCH2A|PCH4|PCH5|SEN54L|sen54	tRNA splicing endonuclease subunit 54	protein-coding
125125	chr2	9816101	9816530	+	0	NA	Intergenic	Intergenic	-27127	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
123885	chr19	55304171	55304680	+	0	NA	intron (NM_032430, intron 13 of 18)	intron (NM_032430, intron 13 of 18)	20428	NM_032430	84446		NM_032430	ENSG00000160469	BRSK1	SAD-B|hSAD1	BR serine/threonine kinase 1	protein-coding
59162	chr13	21601851	21602550	+	0	NA	intron (NM_152726, intron 1 of 11)	intron (NM_152726, intron 1 of 11)	1970	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
79339	chr16	583521	583780	+	0	NA	3' UTR (NM_148920, exon 10 of 10)	3' UTR (NM_148920, exon 10 of 10)	-5707	NM_001172663	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
70951	chr14	104676621	104678930	+	0	NA	promoter-TSS (NR_039860)	promoter-TSS (NR_039860)	-26	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	mir-4710	microRNA 4710	ncRNA
3802	chr1	16727001	16727820	+	0	NA	Intergenic	Intergenic	-7253	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
68822	chr14	91267271	91268780	+	0	NA	Intergenic	Intergenic	-14145	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
115947	chr19	16718671	16718930	+	0	NA	Intergenic	AluY|SINE|Alu	-1047	NM_001290355	284434		NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
96567	chr17	40450201	40450500	+	0	NA	intron (NM_001552, intron 1 of 3)	intron (NM_001552, intron 1 of 3)	6900	NM_001552	3487		NM_001552	ENSG00000141753	IGFBP4	BP-4|HT29-IGFBP|IBP4|IGFBP-4	insulin like growth factor binding protein 4	protein-coding
61765	chr13	74286651	74287400	+	0	NA	Intergenic	Intergenic	55581	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
185698	chr5	131999401	132000150	+	0	NA	intron (NM_001205250, intron 1 of 20)	intron (NM_001205250, intron 1 of 20)	11883	NM_001205247	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
68993	chr14	91484021	91484800	+	0	NA	intron (NR_158976, intron 4 of 16)	MER58A|DNA|hAT-Charlie	25900	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
176871	chr4	102625301	102626200	+	0	NA	Intergenic	Intergenic	-123264	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
57157	chr12	121298601	121299000	+	0	NA	promoter-TSS (NM_006549)	promoter-TSS (NM_006549)	-492	NM_153500	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
78733	chr15	98720471	98720830	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	-63776	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
5163	chr1	24923401	24924310	+	0	NA	intron (NM_001031680, intron 3 of 5)	intron (NM_001031680, intron 3 of 5)	-4439	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
196999	chr6	53306071	53306500	+	0	NA	intron (NM_001242830, intron 1 of 6)	(AGGGGAG)n|Simple_repeat|Simple_repeat	29292	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
131982	chr2	100288951	100289280	+	0	NA	intron (NM_001371783, intron 11 of 12)	intron (NM_001371783, intron 11 of 12)	33386	NM_001371783	164832		NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
208214	chr7	65225371	65225880	+	0	NA	intron (NR_146906, intron 15 of 17)	L1PB1|LINE|L1	84595	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
28922	chr10	63176971	63177330	+	0	NA	intron (NM_001322258, intron 22 of 24)	intron (NM_001322258, intron 22 of 24)	43822	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
218490	chr8	52007951	52008800	+	0	NA	Intergenic	Intergenic	-109189	NM_001286782	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
28893	chr10	62817801	62819750	+	0	NA	intron (NM_001136178, intron 1 of 3)	CpG-2954	392	NM_001136178	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
131213	chr2	95074051	95075350	+	0	NA	Intergenic	Intergenic	46857	NM_001321997	64969		NM_031902	ENSG00000144029	MRPS5	MRP-S5|S5mt|uS5m	mitochondrial ribosomal protein S5	protein-coding
82799	chr16	21465971	21466330	+	0	NA	intron (NR_027155, intron 11 of 28)	AluJr|SINE|Alu	-31695	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
134052	chr2	131311151	131311250	+	0	NA	Intergenic	Intergenic	31910	NR_030728	440910		NR_030728	ENSG00000290654	LOC440910	-	uncharacterized LOC440910	ncRNA
138912	chr2	218124951	218125250	+	0	NA	promoter-TSS (NM_001557)	promoter-TSS (NM_001557)	-194	NM_001168298	3579		NM_001557	ENSG00000180871	CXCR2	CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB|WHIMS2	C-X-C motif chemokine receptor 2	protein-coding
212683	chr7	129638301	129638500	+	0	NA	intron (NM_001040110, intron 1 of 10)	intron (NM_001040110, intron 1 of 10)	8322	NM_001040110	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
110706	chr19	2300351	2301780	+	0	NA	intron (NM_001101391, intron 1 of 1)	intron (NM_001101391, intron 1 of 1)	7089	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
71930	chr15	22839821	22841150	+	0	NA	intron (NM_001008860, intron 2 of 6)	AluSx1|SINE|Alu	1844	NM_001184888	81614		NM_030922	ENSG00000140157	NIPA2	SLC57A2	NIPA magnesium transporter 2	protein-coding
92310	chr17	8125101	8126200	+	0	NA	Intergenic	CpG	-1544	NM_001165967	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
218761	chr8	58963151	58963800	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	155672	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
17630	chr1	157106401	157106950	+	0	NA	Intergenic	Intergenic	-6867	NM_001004341	440695		NM_001004341	ENSG00000253831	ETV3L	-	ETS variant transcription factor 3 like	protein-coding
138283	chr2	203707471	203708100	+	0	NA	intron (NM_001243078, intron 1 of 2)	MIR|SINE|MIR	1146	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
153843	chr22	30104221	30105080	+	0	NA	intron (NM_152510, intron 5 of 10)	intron (NM_152510, intron 5 of 10)	24186	NM_001329458	150280		NM_152510	ENSG00000176635	HORMAD2	CT46.2	HORMA domain containing 2	protein-coding
135208	chr2	159118321	159118900	+	0	NA	intron (NM_001350063, intron 4 of 24)	intron (NM_001350063, intron 4 of 24)	-68225	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
185666	chr5	131608621	131608980	+	0	NA	intron (NM_016340, intron 1 of 27)	MSTA1|LTR|ERVL-MaLR	26429	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
201284	chr6	144301471	144301830	+	0	NA	intron (NM_007124, intron 1 of 73)	AluSx1|SINE|Alu	9913	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
237535	chrX	120365301	120365530	+	0	NA	intron (NM_012069, intron 1 of 7)	intron (NM_012069, intron 1 of 7)	3326	NM_001142447	23439		NM_012069	ENSG00000101892	ATP1B4	-	ATPase Na+/K+ transporting family member beta 4	protein-coding
55478	chr12	104715521	104716180	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	124217	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
27578	chr10	32371071	32371230	+	0	NA	intron (NR_104163, intron 1 of 1)	intron (NR_104163, intron 1 of 1)	7619	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
183141	chr5	75027871	75028430	+	0	NA	3' UTR (NM_001366737, exon 4 of 4)	3' UTR (NM_001366737, exon 4 of 4)	24408	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
50586	chr12	48446101	48446300	+	0	NA	Intergenic	Intergenic	-26359	NM_012404	23519		NM_012404	ENSG00000139223	ANP32D	PP32R2	acidic nuclear phosphoprotein 32 family member D	protein-coding
166746	chr3	122047451	122047750	+	0	NA	Intergenic	L1PA2|LINE|L1	-7762	NM_001206925	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
35273	chr11	920851	921150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4809	NM_001242837	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
75315	chr15	65300071	65301330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3977	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
26949	chr10	26543701	26544580	+	0	NA	intron (NM_019043, intron 11 of 14)	intron (NM_019043, intron 11 of 14)	35167	NR_134472	101929117		NR_134472		LINC03028	-	long intergenic non-protein coding RNA 3028	ncRNA
32515	chr10	102777221	102777680	+	0	NA	intron (NM_017787, intron 1 of 3)	intron (NM_017787, intron 1 of 3)	1229	NM_017787	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
234609	chrX	19806451	19806550	+	0	NA	intron (NM_001353892, intron 2 of 17)	AluSz|SINE|Alu	-6727	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
41693	chr11	66634971	66635830	+	0	NA	intron (NM_001198846, intron 1 of 1)	AluSg|SINE|Alu	-3217	NM_001198843	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
228963	chr9	113509271	113509630	+	0	NA	intron (NM_144488, intron 15 of 25)	intron (NM_144488, intron 15 of 25)	7943	NM_130795	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
104607	chr17	81414921	81415380	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-14372	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
186065	chr5	134084201	134084530	+	0	NA	Intergenic	Intergenic	-30316	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
207834	chr7	50334971	50335130	+	0	NA	intron (NM_001291840, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	16002	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
95903	chr17	38897151	38897250	+	0	NA	intron (NR_073384, intron 4 of 7)	intron (NR_073384, intron 4 of 7)	-17779	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
167156	chr3	128058451	128058750	+	0	NA	intron (NM_013336, intron 5 of 11)	AluJr|SINE|Alu	6163	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
33680	chr10	119895301	119895700	+	0	NA	intron (NR_037771, intron 1 of 17)	L2c|LINE|L2	2770	NM_007190	11196		NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A|iPLA1A|iPLA1beta	SEC23 interacting protein	protein-coding
98926	chr17	48617571	48617930	+	0	NA	Intergenic	Intergenic	-2458	NM_024016	3218		NM_024016	ENSG00000120068	HOXB8	HOX2|HOX2D|Hox-2.4	homeobox B8	protein-coding
156235	chr22	40385101	40386500	+	0	NA	intron (NM_001350047, intron 1 of 20)	intron (NM_001350047, intron 1 of 20)	15206	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
231089	chr9	129795221	129795750	+	0	NA	Intergenic	L2a|LINE|L2	-7658	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
101087	chr17	64927321	64928100	+	0	NA	Intergenic	Intergenic	-8219	NM_001303255	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
121551	chr19	47252001	47252450	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4300	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
111504	chr19	3982621	3983600	+	0	NA	promoter-TSS (NR_002602)	promoter-TSS (NR_002602)	-538	NR_002602	26812		NR_002602	ENSG00000206775	SNORD37	RNU37|U37	small nucleolar RNA, C/D box 37	snoRNA
179170	chr4	170028401	170029030	+	0	NA	Intergenic	Intergenic	-2320	NM_021647	9848		NM_021647	ENSG00000198948	MFAP3L	NYD-sp9	microfibril associated protein 3 like	protein-coding
39177	chr11	57424471	57425550	+	0	NA	intron (NM_199329, intron 4 of 13)	intron (NM_199329, intron 4 of 13)	2111	NM_001278201	29015		NM_014096	ENSG00000134802	SLC43A3	EEG1|ENBT1|FOAP-13|PRO1659|SEEEG-1	solute carrier family 43 member 3	protein-coding
35086	chr11	624551	624650	+	0	NA	exon (NM_021924, exon 2 of 15).2	exon (NM_021924, exon 2 of 15).2	355	NM_001171968	53841		NM_017717	ENSG00000099834	CDHR5	MLPCDH|MU-PCDH|MUCDHL|MUPCDH	cadherin related family member 5	protein-coding
193852	chr6	31540001	31540500	+	0	NA	TTS (NR_003065)	TTS (NR_003065)	928	NR_003065	692199		NR_003065	ENSG00000265236	SNORD84	U84	small nucleolar RNA, C/D box 84	snoRNA
215222	chr7	156612501	156613320	+	0	NA	intron (NR_026865, intron 1 of 3)	intron (NR_026865, intron 1 of 3)	-9715	NR_103858	100506380		NM_032625	ENSG00000182648	RNF32-DT	C7orf13|LINC01006|MY040	RNF32 divergent transcript	ncRNA
221262	chr8	122787901	122788330	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	6460	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
238019	chrX	135053401	135054050	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-1590	NM_001134321	26071		NM_015582	ENSG00000203950	RTL8A	CXX1b|FAM127B|MAR8A|SIRH6	retrotransposon Gag like 8A	protein-coding
104957	chr17	81961271	81962050	+	0	NA	promoter-TSS (NM_178493)	promoter-TSS (NM_178493)	-473	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
234959	chrX	39149871	39150030	+	0	NA	Intergenic	Intergenic	177412	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
108017	chr18	58758401	58758600	+	0	NA	Intergenic	L2b|LINE|L2	-55380	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
9386	chr1	47333421	47335030	+	0	NA	intron (NM_001136140, intron 1 of 4)	CpG	435	NM_016308	51727		NM_016308	ENSG00000162368	CMPK1	CK|CMK|CMPK|UMK|UMP-CMPK|UMPK	cytidine/uridine monophosphate kinase 1	protein-coding
9461	chr1	50427551	50428050	+	0	NA	Intergenic	CpG	-4357	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
164444	chr3	59436021	59436480	+	0	NA	Intergenic	Intergenic	222247	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
201330	chr6	144418971	144419750	+	0	NA	intron (NM_007124, intron 2 of 73)	intron (NM_007124, intron 2 of 73)	13705	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
212784	chr7	130070101	130071150	+	0	NA	promoter-TSS (NM_014997)	promoter-TSS (NM_014997)	91	NM_014997	23008		NM_014997	ENSG00000128607	KLHDC10	PNAS-138|slim	kelch domain containing 10	protein-coding
105745	chr18	2747821	2748350	+	0	NA	intron (NM_015295, intron 30 of 47)	LTR105_Mam|LTR|ERVL	92359	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
20219	chr1	193152821	193152900	+	0	NA	intron (NM_024529, intron 10 of 16)	AluYc3|SINE|Alu	16357	NR_031691	100302163		NR_031691	ENSG00000221680	MIR1278	MIRN1278|hsa-mir-1278|mir-1278	microRNA 1278	ncRNA
161719	chr3	43855771	43855930	+	0	NA	Intergenic	LTR50|LTR|ERVL	-164256	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
78105	chr15	90272471	90272930	+	0	NA	TTS (NM_001033088)	TTS (NM_001033088)	-6941	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
31472	chr10	96516371	96516730	+	0	NA	Intergenic	Intergenic	-2624	NM_012465	7093		NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding
151041	chr21	44630401	44630700	+	0	NA	intron (NM_144991, intron 1 of 11)	L1MB5|LINE|L1	3457	NM_198690	386676		NM_198690	ENSG00000221837	KRTAP10-9	KAP10.9|KAP18.9|KRTAP18-9	keratin associated protein 10-9	protein-coding
159909	chr3	16918471	16918630	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	-14540	NM_015184	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
232906	chr9	136857301	136857500	+	0	NA	exon (NM_206920, exon 18 of 27)	exon (NM_206920, exon 18 of 27)	5054	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
198680	chr6	107973271	107973630	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-15242	NM_007214	11231		NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L	SEC63 homolog, protein translocation regulator	protein-coding
157457	chr22	45254471	45255630	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-14156	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
133798	chr2	127801071	127801800	+	0	NA	intron (NM_001006623, intron 1 of 7)	FLAM_C|SINE|Alu	9736	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
97778	chr17	44628651	44628950	+	0	NA	Intergenic	Intergenic	21549	NR_110661	101927017		NR_110661	ENSG00000266979	LINC01180	-	long intergenic non-protein coding RNA 1180	ncRNA
171317	chr3	195976901	195977380	+	0	NA	non-coding (NR_003264, exon 8 of 17)	non-coding (NR_003264, exon 8 of 17)	13139	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
85898	chr16	57067171	57067530	+	0	NA	intron (NM_001384955, intron 33 of 47)	intron (NM_001384955, intron 33 of 47)	-25233	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
50991	chr12	49632921	49633180	+	0	NA	exon (NM_012272, exon 6 of 25)	exon (NM_012272, exon 6 of 25)	9489	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
118256	chr19	35254501	35254900	+	0	NA	intron (NM_001260490, intron 2 of 6)	intron (NM_001260490, intron 2 of 6)	5698	NM_001385215	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
192493	chr6	24962701	24963230	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-27005	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
78498	chr15	92925101	92925530	+	0	NA	intron (NM_001042572, intron 3 of 12)	intron (NM_001042572, intron 3 of 12)	20916	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
110502	chr19	2050601	2051900	+	0	NA	promoter-TSS (NM_017572)	promoter-TSS (NM_017572)	-6	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
223132	chr8	143488121	143488630	+	0	NA	intron (NM_015117, intron 4 of 11)	CpG	17873	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
187626	chr5	142983901	142984100	+	0	NA	intron (NR_146198, intron 11 of 22)	MLT1J|LTR|ERVL-MaLR	-115090	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
220264	chr8	97689921	97690180	+	0	NA	intron (NM_178812, intron 5 of 11)	AluSq2|SINE|Alu	45866	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
79631	chr16	1148621	1149300	+	0	NA	Intergenic	Intergenic	-4146	NM_021098	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
159659	chr3	15347171	15348500	+	0	NA	Intergenic	Intergenic	-6455	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
168789	chr3	152100421	152100830	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	104804	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
85191	chr16	46947871	46948480	+	0	NA	Intergenic	AluSz|SINE|Alu	25499	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
81199	chr16	4491651	4491950	+	0	NA	intron (NM_001286269, intron 2 of 6)	AluSx4|SINE|Alu	-4019	NM_001286270	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
178387	chr4	146943801	146944400	+	0	NA	intron (NM_001300761, intron 2 of 13)	intron (NM_001300761, intron 2 of 13)	1764	NM_001300761	83894		NM_031956	ENSG00000137473	TTC29	NYD-SP14|SPGF42|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
184074	chr5	93578071	93578500	+	0	NA	intron (NR_109818, intron 1 of 6)	intron (NR_109818, intron 1 of 6)	3035	NR_109824	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
141040	chr2	238231071	238231930	+	0	NA	promoter-TSS (NR_026923)	promoter-TSS (NR_026923)	177	NR_026926	151174		NR_026925	ENSG00000186235	LINC02610	-	long intergenic non-protein coding RNA 2610	ncRNA
232656	chr9	136484801	136485780	+	0	NA	3' UTR (NM_152571, exon 1 of 1)	3' UTR (NM_152571, exon 1 of 1)	-1531	NM_001276418	9919		NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding
198569	chr6	107064671	107065030	+	0	NA	TTS (NM_001367314)	TTS (NM_001367314)	36651	NM_001142468	51250		NM_016487	ENSG00000130349	MTRES1	C6orf203|HSPC230|PRED31	mitochondrial transcription rescue factor 1	protein-coding
132150	chr2	101736851	101737300	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	38810	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
86970	chr16	68147651	68147950	+	0	NA	intron (NM_173165, intron 3 of 9)	intron (NM_173165, intron 3 of 9)	62430	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
191610	chr6	12114021	12114650	+	0	NA	intron (NM_002114, intron 3 of 8)	L2|LINE|L2	102023	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
203495	chr7	599651	600030	+	0	NA	intron (NM_001164759, intron 6 of 10)	intron (NM_001164759, intron 6 of 10)	-3005	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
130984	chr2	87692271	87692500	+	0	NA	Intergenic	Intergenic	-8598	NR_160651	730268		NR_160651	ENSG00000234231	ANAPC1P4	-	ANAPC1 pseudogene 4	pseudo
120067	chr19	42075401	42076800	+	0	NA	promoter-TSS (NM_022752)	promoter-TSS (NM_022752)	-66	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
166542	chr3	115097421	115098050	+	0	NA	intron (NM_001348800, intron 1 of 11)	intron (NM_001348800, intron 1 of 11)	2573	NM_001348805	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
215179	chr7	155685171	155685930	+	0	NA	intron (NM_053043, intron 5 of 17)	L2c|LINE|L2	40889	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
13709	chr1	116766751	116767680	+	0	NA	intron (NM_001328609, intron 4 of 4)	intron (NM_001328609, intron 4 of 4)	12785	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
4577	chr1	22066271	22066580	+	0	NA	intron (NM_044472, intron 1 of 5)	intron (NM_044472, intron 1 of 5)	13716	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
206326	chr7	30303451	30304030	+	0	NA	intron (NM_147128, intron 1 of 4)	MER5A|DNA|hAT-Charlie	-13850	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
77029	chr15	78741821	78742480	+	0	NA	Intergenic	Intergenic	-9887	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
50782	chr12	49040001	49040750	+	0	NA	exon (NM_003482, exon 32 of 55)	exon (NM_003482, exon 32 of 55)	20419	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
168617	chr3	149579751	149580650	+	0	NA	intron (NM_001348362, intron 5 of 9)	intron (NM_001348362, intron 5 of 9)	77825	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
97941	chr17	45197301	45198140	+	0	NA	intron (NR_147507, intron 2 of 2)	intron (NR_147507, intron 2 of 2)	24045	NR_147507	339192		NR_147507	ENSG00000267121	FMNL1-DT	-	FMNL1 divergent transcript	ncRNA
235448	chrX	46446751	46448130	+	0	NA	intron (NM_017776, intron 1 of 5)	intron (NM_017776, intron 1 of 5)	143	NM_001129898	55634		NM_017776	ENSG00000147121	KRBOX4	ZNF673	KRAB box domain containing 4	protein-coding
229461	chr9	121735001	121735530	+	0	NA	intron (NM_032552, intron 3 of 16)	intron (NM_032552, intron 3 of 16)	-7520	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
70112	chr14	100241851	100241950	+	0	NA	intron (NM_003403, intron 1 of 4)	AluSx1|SINE|Alu	2756	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
17727	chr1	158939071	158939430	+	0	NA	intron (NM_152501, intron 4 of 8)	intron (NM_152501, intron 4 of 8)	7698	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
54091	chr12	76074621	76075100	+	0	NA	intron (NM_139207, intron 1 of 15)	intron (NM_139207, intron 1 of 15)	9825	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
63203	chr13	113816351	113816450	+	0	NA	3' UTR (NM_182614, exon 9 of 9)	3' UTR (NM_182614, exon 9 of 9)	790	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
73007	chr15	40741351	40741650	+	0	NA	intron (NM_018145, intron 6 of 12)	intron (NM_018145, intron 6 of 12)	13754	NM_018145	55177		NM_018145	ENSG00000137824	RMDN3	FAM82A2|FAM82C|RMD-3|RMD3|ptpip51	regulator of microtubule dynamics 3	protein-coding
58545	chr12	132244021	132244650	+	0	NA	intron (NM_001122636, intron 6 of 10)	CpG	-31056	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
1840	chr1	6263151	6263250	+	0	NA	Intergenic	Intergenic	-2102	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
200913	chr6	139139401	139140000	+	0	NA	intron (NM_016217, intron 1 of 3)	LTR16|LTR|ERVL	4620	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
226593	chr9	73149071	73149950	+	0	NA	Intergenic	Intergenic	-2355	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
194211	chr6	32185521	32187650	+	0	NA	intron (NM_002586, intron 8 of 8).6	intron (NM_002586, intron 8 of 8).6	-2263	NM_001206929	177		NM_001136	ENSG00000204305	AGER	RAGE|SCARJ1|sRAGE	advanced glycosylation end-product specific receptor	protein-coding
229790	chr9	125242951	125243050	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1657	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
117551	chr19	21026671	21027030	+	0	NA	intron (NM_025189, intron 2 of 4)	AluSc|SINE|Alu	6193	NM_025189	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
164007	chr3	53168901	53170080	+	0	NA	intron (NM_001354676, intron 1 of 17)	intron (NM_001354676, intron 1 of 17)	787	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
127504	chr2	42286321	42286580	+	0	NA	intron (NM_019063, intron 10 of 22)	intron (NM_019063, intron 10 of 22)	73588	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
102848	chr17	76480351	76480450	+	0	NA	intron (NM_024599, intron 3 of 18)	AluJo|SINE|Alu	12797	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
207050	chr7	39621951	39622330	+	0	NA	Intergenic	L2c|LINE|L2	-1432	NM_005402	5898		NM_005402	ENSG00000006451	RALA	HINCONS|RAL	RAS like proto-oncogene A	protein-coding
46277	chr11	124842751	124843800	+	0	NA	Intergenic	CpG	-22157	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
10294	chr1	64849101	64849950	+	0	NA	intron (NM_001321857, intron 12 of 24)	L2a|LINE|L2	104450	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
230528	chr9	128360401	128361080	+	0	NA	3' UTR (NM_005094, exon 13 of 13)	3' UTR (NM_005094, exon 13 of 13)	8693	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
200282	chr6	132763351	132764230	+	0	NA	promoter-TSS (NM_078488)	promoter-TSS (NM_078488)	-335	NM_078488	8875		NM_004665	ENSG00000112303	VNN2	FOAP-4|GPI-80	vanin 2	protein-coding
217262	chr8	27323451	27324250	+	0	NA	intron (NM_173174, intron 5 of 35)	intron (NM_173174, intron 5 of 35)	1448	NM_004103	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
161687	chr3	43391571	43391730	+	0	NA	intron (NM_001204831, intron 11 of 12)	MLT1F2|LTR|ERVL-MaLR	-39688	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
114755	chr19	13441821	13442150	+	0	NA	intron (NM_023035, intron 3 of 46)	intron (NM_023035, intron 3 of 46)	64494	NM_000068	773		NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|DEE42|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6	calcium voltage-gated channel subunit alpha1 A	protein-coding
138859	chr2	216689201	216689600	+	0	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	6149	NM_000599	3488		NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
43459	chr11	78076821	78077800	+	0	NA	intron (NM_004549, intron 1 of 2)	intron (NM_004549, intron 1 of 2)	2552	NM_001203262	100532726		NM_001203260	ENSG00000259112	NDUFC2-KCTD14	-	NDUFC2-KCTD14 readthrough	protein-coding
208857	chr7	73715351	73716300	+	0	NA	intron (NM_001165903, intron 1 of 9)	intron (NM_001165903, intron 1 of 9)	3844	NM_004603	6804		NM_004603	ENSG00000106089	STX1A	HPC-1|P35-1|STX1|SYN1A	syntaxin 1A	protein-coding
81027	chr16	4263551	4264150	+	0	NA	intron (NM_003223, intron 1 of 6)	intron (NM_003223, intron 1 of 6)	9173	NM_003223	7023		NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding
71615	chr14	106680651	106680750	+	0	NA	Intergenic	Intergenic	170299	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
99095	chr17	49012651	49013400	+	0	NA	intron (NM_001160423, intron 2 of 12)	MIRc|SINE|MIR	15640	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
51467	chr12	52061201	52061600	+	0	NA	Intergenic	MIR|SINE|MIR	-8574	NM_021934	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
221036	chr8	116710071	116710230	+	0	NA	intron (NM_003756, intron 2 of 7)	intron (NM_003756, intron 2 of 7)	45673	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
17915	chr1	160210071	160210430	+	0	NA	intron (NM_001297576, intron 3 of 5)	intron (NM_001297576, intron 3 of 5)	-1381	NR_123725	729867		NR_123725	ENSG00000227741	LOC729867	-	uncharacterized LOC729867	ncRNA
160803	chr3	32998851	32999750	+	0	NA	intron (NM_000404, intron 15 of 15)	intron (NM_000404, intron 15 of 15)	47656	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
211356	chr7	104960621	104960880	+	0	NA	Intergenic	Intergenic	30415	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
45393	chr11	118330951	118331750	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	11355	NM_000732	915		NM_000732	ENSG00000167286	CD3D	CD3-DELTA|CD3DELTA|IMD19|T3D	CD3 delta subunit of T-cell receptor complex	protein-coding
71774	chr15	21282751	21283640	+	0	NA	Intergenic	Intergenic	14634	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
2526	chr1	9714051	9714720	+	0	NA	intron (NM_001350234, intron 3 of 23)	MER58A|DNA|hAT-Charlie	22918	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
69682	chr14	98150371	98150730	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-172426	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
113235	chr19	8484521	8485100	+	0	NA	intron (NM_031203, intron 14 of 16)	intron (NM_031203, intron 14 of 16)	17830	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
149312	chr21	29011621	29012150	+	0	NA	intron (NM_001320724, intron 1 of 5)	SVA_D|Retroposon|SVA	7464	NM_016940	10069		NM_016940	ENSG00000156253	RWDD2B	C21orf6|GL011	RWD domain containing 2B	protein-coding
26767	chr10	22778601	22779000	+	0	NA	Intergenic	Intergenic	-64222	NM_005028	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
4875	chr1	23776901	23779000	+	0	NA	promoter-TSS (NM_020362)	promoter-TSS (NM_020362)	347	NR_038280	100506963		NR_038280	ENSG00000236810	ELOA-AS1	TCEB3-AS1	ELOA antisense RNA 1	ncRNA
124863	chr2	8277971	8278550	+	0	NA	intron (NR_152741, intron 8 of 9)	intron (NR_152741, intron 8 of 9)	50159	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
87553	chr16	71931401	71931930	+	0	NA	TTS (NM_001270978)	TTS (NM_001270978)	36134	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
99060	chr17	48931371	48931730	+	0	NA	intron (NM_001317192, intron 7 of 7)	intron (NM_001317192, intron 7 of 7)	13292	NR_133679	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
174703	chr4	42580071	42580230	+	0	NA	intron (NM_001105529, intron 10 of 35)	intron (NM_001105529, intron 10 of 35)	76955	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
42245	chr11	68118301	68118500	+	0	NA	intron (NM_212469, intron 1 of 10)	AluJb|SINE|Alu	2988	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
5533	chr1	25812451	25812850	+	0	NA	intron (NM_206926, intron 8 of 11)	intron (NM_206926, intron 8 of 11)	-7256	NM_001099627	56181		NM_019557	ENSG00000117640	MTFR1L	FAM54B|HYST1888|MST116|MSTP116	mitochondrial fission regulator 1 like	protein-coding
127165	chr2	38163151	38163250	+	0	NA	intron (NR_027252, intron 2 of 2)	intron (NR_027252, intron 2 of 2)	32095	NR_027252	285154		NM_173652	ENSG00000232973	CYP1B1-AS1	C2orf58	CYP1B1 antisense RNA 1	ncRNA
62190	chr13	97583821	97584480	+	0	NA	Intergenic	MER89|LTR|ERV1	149981	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
44170	chr11	96224871	96225400	+	0	NA	intron (NM_032427, intron 1 of 4)	MLT1F1|LTR|ERVL-MaLR	-116303	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
196977	chr6	53070751	53071000	+	0	NA	promoter-TSS (NM_012347)	promoter-TSS (NM_012347)	-98	NM_012347	26268		NM_012347	ENSG00000112146	FBXO9	FBX9|NY-REN-57|VCIA1|dJ341E18.2	F-box protein 9	protein-coding
24643	chr1	246821221	246821680	+	0	NA	Intergenic	Intergenic	31833	NR_015422	149134		NM_207326		LINC01341	-	long intergenic non-protein coding RNA 1341	ncRNA
193919	chr6	31636871	31637830	+	0	NA	intron (NM_004638, intron 30 of 30).7	intron (NM_004638, intron 30 of 30).7	3563	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
174954	chr4	49150671	49151230	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	164308	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
178014	chr4	139314971	139315130	+	0	NA	intron (NM_057175, intron 1 of 19)	(TTAGG)n|Simple_repeat|Simple_repeat	-12499	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
155662	chr22	39019471	39019630	+	0	NA	3' UTR (NM_014508, exon 4 of 4)	3' UTR (NM_014508, exon 4 of 4)	-1577	NM_001363781	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
90507	chr17	1460071	1460650	+	0	NA	Intergenic	Intergenic	-4128	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
234812	chrX	24081301	24082100	+	0	NA	Intergenic	AluJb|SINE|Alu	26744	NM_001415	1968		NM_001415	ENSG00000130741	EIF2S3	EIF2|EIF2G|EIF2gamma|MEHMO|MRXSBRK|eIF-2gA|eIF2gX	eukaryotic translation initiation factor 2 subunit gamma	protein-coding
6328	chr1	27667721	27668400	+	0	NA	intron (NM_022872, intron 4 of 4)	AluSx|SINE|Alu	4132	NM_002038	2537		NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon alpha inducible protein 6	protein-coding
133766	chr2	127641851	127643030	+	0	NA	intron (NM_001136037, intron 6 of 10)	intron (NM_001136037, intron 6 of 10)	-3424	NM_001161415	2840		NM_005291	ENSG00000144230	GPR17	-	G protein-coupled receptor 17	protein-coding
171084	chr3	195484421	195485030	+	0	NA	Intergenic	Intergenic	-41705	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
18483	chr1	161627671	161627830	+	0	NA	intron (NM_001244753, intron 3 of 4)	L2c|LINE|L2	3297	NM_001271036	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
100312	chr17	59828951	59830000	+	0	NA	intron (NM_030938, intron 10 of 11)	intron (NM_030938, intron 10 of 11)	-11791	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
184938	chr5	112988121	112988380	+	0	NA	intron (NM_152624, intron 2 of 10)	AluY|SINE|Alu	11452	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
62165	chr13	97260821	97261080	+	0	NA	intron (NM_001382682, intron 1 of 7)	intron (NM_001382682, intron 1 of 7)	38617	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
174604	chr4	40265021	40266230	+	0	NA	Intergenic	Intergenic	-41560	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
77197	chr15	80780521	80780780	+	0	NA	intron (NM_018689, intron 1 of 28)	CpG	1280	NM_018689	57214		NM_018689	ENSG00000103888	CEMIP	CCSP1|CEMIP1|HYBID|KIAA1199|TMEM2L	cell migration inducing hyaluronidase 1	protein-coding
39869	chr11	62444451	62444830	+	0	NA	intron (NM_024060, intron 5 of 5)	CpG	25607	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
116843	chr19	18596421	18597150	+	0	NA	exon (NM_004750, exon 6 of 9)	exon (NM_004750, exon 6 of 9)	7987	NM_001100418	55049		NM_017967	ENSG00000006015	REX1BD	C19orf60	required for excision 1-B domain containing	protein-coding
163332	chr3	50376571	50376730	+	0	NA	intron (NM_006030, intron 17 of 37)	intron (NM_006030, intron 17 of 37)	11287	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
185859	chr5	132500801	132502200	+	0	NA	Intergenic	Intergenic	-10727	NM_001354925	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
77399	chr15	83081301	83081550	+	0	NA	Intergenic	L1ME3A|LINE|L1	14090	NR_039740	100616404		NR_039740	ENSG00000263643	MIR4515	mir-4515	microRNA 4515	ncRNA
133284	chr2	113551501	113552700	+	0	NA	intron (NR_146439, intron 1 of 3)	intron (NR_146439, intron 1 of 3)	-9410	NR_121187	103344932		NR_121185	ENSG00000231943	PGM5P4-AS1	FAM233C	PGM5P4 antisense RNA 1	ncRNA
195091	chr6	35590421	35590680	+	0	NA	intron (NM_001145777, intron 6 of 6)	intron (NM_001145777, intron 6 of 6)	74239	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
109627	chr19	986001	986630	+	0	NA	intron (NM_001372085, intron 4 of 11)	AluSx1|SINE|Alu	1970	NM_024100	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
158844	chr3	9807651	9807750	+	0	NA	TTS (NM_001024960)	TTS (NM_001024960)	-2215	NM_001025930	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
152626	chr22	21438301	21438750	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	21154	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
112939	chr19	7698821	7699080	+	0	NA	intron (NM_002002, intron 2 of 10)	intron (NM_002002, intron 2 of 10)	529	NM_001207019	2208		NM_002002	ENSG00000104921	FCER2	BLAST-2|CD23|CD23A|CLEC4J|FCE2|FCErII|IGEBF	Fc epsilon receptor II	protein-coding
54321	chr12	89529571	89530090	+	0	NA	intron (NR_146294, intron 1 of 1)	intron (NR_146294, intron 1 of 1)	-3568	NM_001199782	100528030		NM_001199781	ENSG00000259075	POC1B-GALNT4	GALNT4|GalNAc-T4	POC1B-GALNT4 readthrough	protein-coding
9337	chr1	46614771	46615100	+	0	NA	intron (NM_201403, intron 1 of 3)	intron (NM_201403, intron 1 of 3)	198	NM_145279	148932		NM_145279	ENSG00000142961	MOB3C	MOB1E|MOBKL2C	MOB kinase activator 3C	protein-coding
219058	chr8	65798971	65799880	+	0	NA	intron (NM_001242318, intron 1 of 12)	L2c|LINE|L2	-10368	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
182457	chr5	62326371	62326530	+	0	NA	intron (NM_001243952, intron 2 of 20)	L2|LINE|L2	20244	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
203213	chr6	167910201	167910350	+	0	NA	intron (NM_001040000, intron 13 of 29)	MER112|DNA|hAT-Charlie	66664	NM_001129895	100128124		NM_001129895		HGC6.3	-	uncharacterized LOC100128124	ncRNA
76918	chr15	78046421	78047400	+	0	NA	intron (NM_144572, intron 2 of 12)	intron (NM_144572, intron 2 of 12)	30742	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
32840	chr10	110036701	110037100	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-28519	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
136273	chr2	174686351	174686750	+	0	NA	Intergenic	Intergenic	-3637	NM_001375835	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
215146	chr7	155461551	155461850	+	0	NA	intron (NM_001427, intron 1 of 1)	intron (NM_001427, intron 1 of 1)	3571	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
57651	chr12	122525351	122526100	+	0	NA	intron (NR_036436, intron 1 of 9)	intron (NR_036436, intron 1 of 9)	1211	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
213805	chr7	140982501	140982720	+	0	NA	Intergenic	Intergenic	32069	NM_016071	51650		NM_016071	ENSG00000090263	MRPS33	CGI-139|MRP-S33|PTD003|S33mt|mS33	mitochondrial ribosomal protein S33	protein-coding
203982	chr7	1669521	1669900	+	0	NA	Intergenic	CpG	-18409	NM_001128636	392617		NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
107429	chr18	46205621	46206050	+	0	NA	intron (NM_145055, intron 1 of 4)	AluJb|SINE|Alu	31801	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
116221	chr19	17516101	17516680	+	0	NA	intron (NM_012088, intron 2 of 4)	intron (NM_012088, intron 2 of 4)	-4501	NR_147835	100507551		NR_147835	ENSG00000269439	PGLS-DT	-	PGLS divergent transcript	ncRNA
237427	chrX	119655171	119655530	+	0	NA	intron (NM_145799, intron 3 of 10)	intron (NM_145799, intron 3 of 10)	-8502	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
115640	chr19	16107871	16108650	+	0	NA	Intergenic	AluSq|SINE|Alu	-3629	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
229338	chr9	120909651	120910430	+	0	NA	intron (NM_005658, intron 6 of 7)	intron (NM_005658, intron 6 of 7)	4532	NM_001190947	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
176093	chr4	82903871	82904400	+	0	NA	intron (NM_024672, intron 1 of 4)	AluSq2|SINE|Alu	-3219	NR_034076	100499177		NR_034075	ENSG00000251022	THAP9-AS1	-	THAP9 antisense RNA 1	ncRNA
56892	chr12	120318921	120319180	+	0	NA	Intergenic	Intergenic	8729	NM_000928	5319		NM_000928	ENSG00000170890	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2 group IB	protein-coding
71254	chr14	105200901	105201100	+	0	NA	Intergenic	Intergenic	-19677	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
213661	chr7	139830801	139831200	+	0	NA	intron (NM_030984, intron 1 of 11)	intron (NM_030984, intron 1 of 11)	1736	NM_001366538	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
212032	chr7	114934451	114934980	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	12561	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
192215	chr6	18154671	18156230	+	0	NA	promoter-TSS (NM_001364614)	promoter-TSS (NM_001364614)	28	NM_153042	221656		NM_153042	ENSG00000165097	KDM1B	AOF1|C6orf193|LSD2	lysine demethylase 1B	protein-coding
177207	chr4	108372501	108373300	+	0	NA	Intergenic	Intergenic	-184333	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
133330	chr2	113901871	113902600	+	0	NA	intron (NM_001277140, intron 1 of 11)	intron (NM_001277140, intron 1 of 11)	-11243	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128530	chr2	60793501	60793700	+	0	NA	intron (NM_022894, intron 17 of 21)	intron (NM_022894, intron 17 of 21)	37332	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
115996	chr19	17100221	17100480	+	0	NA	intron (NM_004145, intron 1 of 39)	AluSx|SINE|Alu	8115	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
155916	chr22	39568651	39568950	+	0	NA	Intergenic	Intergenic	-1953	NM_021096	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
140627	chr2	233457221	233457480	+	0	NA	intron (NM_001377259, intron 19 of 27)	intron (NM_001377259, intron 19 of 27)	32548	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
56923	chr12	120441471	120441930	+	0	NA	TTS (NM_004373)	TTS (NM_004373)	3587	NM_004373	1337		NM_004373	ENSG00000111775	COX6A1	CMTRID|COX6A|COX6AL	cytochrome c oxidase subunit 6A1	protein-coding
28420	chr10	48110351	48110450	+	0	NA	Intergenic	Intergenic	64743	NM_001042512	143162		NM_152428	ENSG00000170324	FRMPD2	PDZD5C|PDZK4|PDZK5C	FERM and PDZ domain containing 2	protein-coding
49299	chr12	21436301	21436680	+	0	NA	Intergenic	L2c|LINE|L2	-1165	NM_001350913	79912		NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
39671	chr11	61693501	61693850	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	13284	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
208351	chr7	66522621	66523330	+	0	NA	Intergenic	Intergenic	29284	NR_134571	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
83084	chr16	22433751	22433850	+	0	NA	intron (NR_027460, intron 3 of 6).2	MER20|DNA|hAT-Charlie	-3208	NR_027154	641298		NM_199284	ENSG00000237296	SMG1P1	-	SMG1 pseudogene 1	pseudo
222352	chr8	133559421	133560230	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	12062	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
150558	chr21	43093251	43093580	+	0	NA	intron (NM_001025204, intron 8 of 8).2	MER104|DNA|TcMar-Tc2	14155	NM_006758	7307		NM_006758	ENSG00000160201	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
72921	chr15	40381321	40381780	+	0	NA	Intergenic	AluJr|SINE|Alu	-1171	NM_033286	90417		NM_033286	ENSG00000128944	KNSTRN	C15orf23|HSD11|ROCHIS|SKAP|TRAF4AF1	kinetochore localized astrin (SPAG5) binding protein	protein-coding
67524	chr14	70995301	70995980	+	0	NA	intron (NM_014982, intron 7 of 35)	intron (NM_014982, intron 7 of 35)	88181	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
63726	chr14	21210921	21211600	+	0	NA	exon (NM_031314, exon 9 of 9)	exon (NM_031314, exon 9 of 9)	-4360	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
233087	chr9	137105371	137105700	+	0	NA	intron (NM_016219, intron 8 of 12)	intron (NM_016219, intron 8 of 12)	9198	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
223964	chr9	1940101	1940330	+	0	NA	Intergenic	Intergenic	-75132	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
103089	chr17	77329221	77329480	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	9835	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
16407	chr1	154460701	154461300	+	0	NA	intron (NM_001382772, intron 9 of 9)	LTR13A|LTR|ERVK	-41219	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
71432	chr14	105623971	105624550	+	0	NA	Intergenic	Intergenic	3144	NR_107059	102466889		NR_107059	ENSG00000277030	MIR8071-2	hsa-mir-8071-2	microRNA 8071-2	ncRNA
4827	chr1	23618571	23618800	+	0	NA	Intergenic	Intergenic	-8649	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
92049	chr17	7500651	7501230	+	0	NA	exon (NM_000937, exon 12 of 30)	exon (NM_000937, exon 12 of 30)	16574	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
23469	chr1	228614551	228615400	+	0	NA	promoter-TSS (NR_023363).3	promoter-TSS (NR_023363).3	-107	NR_023364	100169753		NR_023364	ENSG00000201588	RNA5S2	RN5S2	RNA, 5S ribosomal 2	rRNA
190219	chr5	178233951	178234280	+	0	NA	Intergenic	AluJb|SINE|Alu	-1293	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
12182	chr1	100367621	100368100	+	0	NA	intron (NM_001319210, intron 2 of 16)	intron (NM_001319210, intron 2 of 16)	15354	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
162152	chr3	46968071	46968430	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	8251	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
121928	chr19	48450251	48450550	+	0	NA	exon (NM_031485, exon 4 of 7)	exon (NM_031485, exon 4 of 7)	4417	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
11586	chr1	91554551	91554650	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	53492	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
115968	chr19	16899521	16900750	+	0	NA	intron (NM_015692, intron 36 of 41)	intron (NM_015692, intron 36 of 41)	-3188	NR_147452	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
106374	chr18	13284171	13285030	+	0	NA	intron (NM_001378099, intron 2 of 6)	intron (NM_001378099, intron 2 of 6)	7238	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207444	chr7	44568201	44568400	+	0	NA	intron (NM_019082, intron 11 of 13)	intron (NM_019082, intron 11 of 13)	6238	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
4525	chr1	21819671	21819830	+	0	NA	intron (NM_001013693, intron 3 of 4)	L1MB3|LINE|L1	7485	NM_001013693	401944		NM_001013693	ENSG00000187942	LDLRAD2	-	low density lipoprotein receptor class A domain containing 2	protein-coding
104900	chr17	81893751	81893950	+	0	NA	intron (NM_001002249, intron 2 of 3)	FLAM_C|SINE|Alu	1923	NM_001289416	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
233314	chr9	137417051	137417950	+	0	NA	intron (NM_017820, intron 1 of 21)	CpG	5662	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
228514	chr9	100354971	100355130	+	0	NA	Intergenic	L2a|LINE|L2	-2108	NM_017746	54881		NM_017746	ENSG00000136891	TEX10	Ipi1|bA208F1.2	testis expressed 10	protein-coding
170734	chr3	188185671	188186030	+	0	NA	intron (NM_001375462, intron 1 of 11)	L2b|LINE|L2	7307	NR_024413	401105		NM_207488	ENSG00000279891	FLJ42393	AVPC1948	uncharacterized LOC401105	ncRNA
5257	chr1	25027801	25028180	+	0	NA	Intergenic	Intergenic	4487	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
112751	chr19	7391221	7391680	+	0	NA	intron (NM_001367823, intron 10 of 28)	L2b|LINE|L2	-3695	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
139644	chr2	226722251	226722350	+	0	NA	Intergenic	Intergenic	-63507	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
122704	chr19	49931701	49931930	+	0	NA	intron (NM_001193646, intron 2 of 2)	L2c|LINE|L2	-1249	NR_039906	100616483		NR_039906	ENSG00000283842	MIR4751	-	microRNA 4751	ncRNA
46757	chr11	129750521	129751200	+	0	NA	Intergenic	Intergenic	-64921	NM_001331212	120224		NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
2876	chr1	11478501	11479380	+	0	NA	promoter-TSS (NM_020780)	promoter-TSS (NM_020780)	-215	NM_020780	57540		NM_020780	ENSG00000204624	DISP3	PTCHD2	dispatched RND transporter family member 3	protein-coding
172864	chr4	3299951	3300480	+	0	NA	Intergenic	Intergenic	-13932	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
208678	chr7	73227851	73228350	+	0	NA	intron (NR_003186, intron 3 of 7)	intron (NR_003186, intron 3 of 7)	7461	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
201475	chr6	148770401	148771030	+	0	NA	intron (NM_005715, intron 1 of 7)	MIRc|SINE|MIR	23685	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
204156	chr7	2401521	2402380	+	0	NA	Intergenic	L2a|LINE|L2	-1661	NM_001243795	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
180758	chr5	32142301	32142780	+	0	NA	intron (NM_022130, intron 2 of 3)	SVA_D|Retroposon|SVA	31779	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
59908	chr13	30802701	30803500	+	0	NA	promoter-TSS (NR_047012)	promoter-TSS (NR_047012)	-106	NR_047012	100874158		NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
221584	chr8	125339971	125340200	+	0	NA	intron (NR_146191, intron 6 of 8)	AluYi6|SINE|Alu	-90273	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
143118	chr20	23419751	23420800	+	0	NA	intron (NR_104266, intron 1 of 10)	intron (NR_104266, intron 1 of 10)	1213	NR_104266	63908		NM_022080	ENSG00000125814	NAPB	DEE107|SNAP-BETA|SNAPB	NSF attachment protein beta	protein-coding
103383	chr17	78143201	78143800	+	0	NA	TTS (NM_152468)	TTS (NM_152468)	-2885	NM_001163075	100141515		NM_001163075	ENSG00000187997	C17orf99	IL-40|UNQ464	chromosome 17 open reading frame 99	protein-coding
104650	chr17	81462401	81462600	+	0	NA	intron (NM_001377448, intron 26 of 27)	intron (NM_001377448, intron 26 of 27)	-11312	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
164834	chr3	71018901	71019100	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	45924	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
39520	chr11	61079101	61079800	+	0	NA	Intergenic	Intergenic	-14513	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
93793	chr17	20452501	20452700	+	0	NA	intron (NM_001367292, intron 7 of 10)	intron (NM_001367292, intron 7 of 10)	14935	NM_001367292	284194		NM_001042685	ENSG00000170298	LGALS9B	-	galectin 9B	protein-coding
170633	chr3	187030101	187030480	+	0	NA	intron (NM_003032, intron 1 of 6)	MIRb|SINE|MIR	-8428	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
99325	chr17	49837971	49838130	+	0	NA	TTS (NM_001077504)	TTS (NM_001077504)	-7836	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
81397	chr16	5117001	5117700	+	0	NA	Intergenic	Intergenic	-19530	NM_001289029	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
65489	chr14	51874351	51874750	+	0	NA	intron (NM_001243774, intron 1 of 2)	AluJo|SINE|Alu	13938	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
1063	chr1	1905301	1905700	+	0	NA	Intergenic	AluJb|SINE|Alu	-9760	NM_001330313	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
61481	chr13	52448701	52448900	+	0	NA	intron (NM_001282168, intron 1 of 13)	Charlie22a|DNA|hAT-Charlie	1444	NM_001282169	51028		NM_016075	ENSG00000136100	VPS36	C13orf9|CGI-145|EAP45	vacuolar protein sorting 36 homolog	protein-coding
171811	chr4	658371	658800	+	0	NA	intron (NM_001350155, intron 6 of 17)	intron (NM_001350155, intron 6 of 17)	5408	NM_001350154	5158		NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|GMP-PDEbeta|PDEB|RP40|rd1	phosphodiesterase 6B	protein-coding
97258	chr17	43003501	43004100	+	0	NA	TTS (NM_000988)	TTS (NM_000988)	-2984	NM_001330230	3430		NM_005533	ENSG00000068079	IFI35	IFP35	interferon induced protein 35	protein-coding
141454	chr2	241050671	241050830	+	0	NA	intron (NM_001080437, intron 12 of 31)	MER115|DNA|hAT-Tip100	51537	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
14268	chr1	143424421	143424750	+	0	NA	promoter-TSS (NR_027355)	promoter-TSS (NR_027355)	99	NR_027355	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
110935	chr19	2819581	2820950	+	0	NA	intron (NM_001102651, intron 1 of 4)	CpG	397	NM_001102651	115196		NM_152303	ENSG00000172006	ZNF554	-	zinc finger protein 554	protein-coding
122953	chr19	50724371	50725530	+	0	NA	intron (NM_002975, intron 3 of 3)	CpG-15011	1586	NM_002975	6320		NM_002975	ENSG00000105472	CLEC11A	CLECSF3|LSLCL|P47|SCGF	C-type lectin domain containing 11A	protein-coding
48006	chr12	6925971	6926600	+	0	NA	intron (NM_001007026, intron 1 of 9)	intron (NM_001007026, intron 1 of 9)	-1674	NM_001940	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
19690	chr1	181033151	181034600	+	0	NA	promoter-TSS (NM_001385163)	promoter-TSS (NM_001385163)	-108	NM_001385163	3140		NM_001531	ENSG00000153029	MR1	HLALS	major histocompatibility complex, class I-related	protein-coding
171536	chr3	196739451	196740600	+	0	NA	5' UTR (NM_002577, exon 1 of 15)	5' UTR (NM_002577, exon 1 of 15)	168	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
45023	chr11	117021601	117021880	+	0	NA	intron (NM_001281748, intron 1 of 24)	FLAM_A|SINE|Alu	76688	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
196808	chr6	46015201	46016250	+	0	NA	5' UTR (NM_016929, exon 1 of 6)	5' UTR (NM_016929, exon 1 of 6)	135	NM_016929	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
99473	chr17	50164871	50165950	+	0	NA	promoter-TSS (NM_000023)	promoter-TSS (NM_000023)	-595	NM_000023	6442		NM_000023	ENSG00000108823	SGCA	50DAG|ADL|DAG2|DMDA2|LGMD2D|LGMDR3|SCARMD1|adhalin	sarcoglycan alpha	protein-coding
131778	chr2	98484001	98484630	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	38305	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
176399	chr4	88822621	88823930	+	0	NA	promoter-TSS (NM_001015045)	promoter-TSS (NM_001015045)	86	NM_001265578	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
178881	chr4	155639521	155639780	+	0	NA	Intergenic	Intergenic	-27198	NM_001379666	2982		NM_000856	ENSG00000164116	GUCY1A1	GC-S-alpha-1|GC-SA3|GCS-alpha-3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6	guanylate cyclase 1 soluble subunit alpha 1	protein-coding
31734	chr10	97734851	97735350	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	-2021	NM_001174120	118813		NM_144588	ENSG00000155256	ZFYVE27	PROTRUDIN|SPG33	zinc finger FYVE-type containing 27	protein-coding
169138	chr3	156150571	156151080	+	0	NA	intron (NM_003471, intron 1 of 13)	intron (NM_003471, intron 1 of 13)	7863	NM_003471	7881		NM_003471	ENSG00000169282	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel subfamily A regulatory beta subunit 1	protein-coding
201562	chr6	149315171	149315330	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	-2462	NM_001292034	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
74447	chr15	59524071	59524780	+	0	NA	TTS (NM_152450)	TTS (NM_152450)	86239	NM_152450	145773		NM_152450	ENSG00000157470	FAM81A	-	family with sequence similarity 81 member A	protein-coding
101251	chr17	66304301	66305700	+	0	NA	intron (NM_002737, intron 1 of 16)	intron (NM_002737, intron 1 of 16)	2387	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
53845	chr12	69592271	69592430	+	0	NA	intron (NM_006431, intron 8 of 15)	AluSp|SINE|Alu	6461	NM_001198842	10576		NM_006431	ENSG00000166226	CCT2	99D8.1|CCT-beta|CCTB|HEL-S-100n|PRO1633|TCP-1-beta	chaperonin containing TCP1 subunit 2	protein-coding
136540	chr2	177329021	177329280	+	0	NA	intron (NR_026966, intron 5 of 8)	MSTA|LTR|ERVL-MaLR	-15268	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
64533	chr14	24436421	24437050	+	0	NA	intron (NM_015299, intron 7 of 7)	intron (NM_015299, intron 7 of 7)	6066	NM_020195	56948		NM_020195	ENSG00000100445	SDR39U1	C14orf124|HCDI	short chain dehydrogenase/reductase family 39U member 1	protein-coding
220786	chr8	102600571	102601730	+	0	NA	Intergenic	CpG	49561	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
122603	chr19	49771651	49772350	+	0	NA	intron (NM_014203, intron 1 of 23)	FLAM_A|SINE|Alu	4999	NM_014203	160		NM_014203	ENSG00000196961	AP2A1	ADTAA|AP2-ALPHA|CLAPA1	adaptor related protein complex 2 subunit alpha 1	protein-coding
139743	chr2	229863971	229864280	+	0	NA	intron (NM_001348327, intron 2 of 41)	Tigger9a|DNA|TcMar-Tigger	57554	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
19665	chr1	180630001	180630200	+	0	NA	Intergenic	Intergenic	-1922	NM_001328662	9213		NM_004736	ENSG00000143324	XPR1	IBGC6|SLC53A1|SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
189862	chr5	177190501	177190880	+	0	NA	intron (NM_172349, intron 3 of 23)	AluY|SINE|Alu	56461	NM_001365684	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
153433	chr22	25066971	25067130	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	39076	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
166797	chr3	122566221	122566480	+	0	NA	intron (NM_138287, intron 2 of 4)	L2a|LINE|L2	-1566	NM_031458	83666		NM_031458	ENSG00000138496	PARP9	ARTD9|BAL|BAL1|MGC:7868	poly(ADP-ribose) polymerase family member 9	protein-coding
198706	chr6	108156421	108156900	+	0	NA	non-coding (NR_145458, exon 2 of 2)	non-coding (NR_145458, exon 2 of 2)	-9362	NM_003269	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
20159	chr1	192732851	192733130	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	16662	NR_039624	100616345		NR_039624	ENSG00000283795	MIR4426	-	microRNA 4426	ncRNA
189998	chr5	177466921	177467750	+	0	NA	intron (NM_004395, intron 5 of 13)	intron (NM_004395, intron 5 of 13)	-4909	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
96997	chr17	42283321	42284030	+	0	NA	Intergenic	Intergenic	-3872	NM_003152	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
203886	chr7	1481801	1482430	+	0	NA	intron (NM_001080453, intron 27 of 47)	intron (NM_001080453, intron 27 of 47)	22274	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
119647	chr19	40814121	40814750	+	0	NA	Intergenic	L2a|LINE|L2	-3335	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
146444	chr20	49674321	49674580	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	39428	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
18989	chr1	169348501	169348700	+	0	NA	intron (NR_104229, intron 1 of 12)	intron (NR_104229, intron 1 of 12)	19197	NM_013330	29922		NM_013330	ENSG00000143156	NME7	CFAP67|MN23H7|NDK 7|NDK7|nm23-H7	NME/NM23 family member 7	protein-coding
178335	chr4	145808051	145808730	+	0	NA	intron (NM_178835, intron 8 of 14)	intron (NM_178835, intron 8 of 14)	128244	NM_001080531	646603		NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
167060	chr3	126980121	126980630	+	0	NA	Intergenic	L2|LINE|L2	-8219	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
9641	chr1	52567921	52568250	+	0	NA	Intergenic	Intergenic	-14993	NM_001009881	23318		NM_015269	ENSG00000134744	TUT4	PAPD3|TENT3A|ZCCHC11	terminal uridylyl transferase 4	protein-coding
124613	chr2	1056421	1056680	+	0	NA	intron (NM_018968, intron 1 of 16)	CpG	-105158	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
68563	chr14	89407071	89407430	+	0	NA	intron (NM_001085471, intron 2 of 6)	L1MC5a|LINE|L1	9983	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
14808	chr1	146273201	146273400	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-24473	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
105620	chr18	794571	794930	+	0	NA	intron (NM_005433, intron 1 of 11)	MLT1C|LTR|ERVL-MaLR	17492	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
144746	chr20	36595501	36596700	+	0	NA	intron (NM_001199535, intron 2 of 4)	AluSg|SINE|Alu	-9679	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
230153	chr9	127753771	127754550	+	0	NA	intron (NM_170600, intron 3 of 11)	CpG	1122	NM_001142534	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
213317	chr7	135167771	135168630	+	0	NA	intron (NM_001243754, intron 2 of 3)	intron (NM_001243754, intron 2 of 3)	1274	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
61280	chr13	50125301	50126500	+	0	NA	promoter-TSS (NR_152566)	promoter-TSS (NR_152566)	-359	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
205126	chr7	6994351	6994680	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	72530	NR_037454	100500886		NR_037454	ENSG00000266287	MIR3683	-	microRNA 3683	ncRNA
37649	chr11	22635551	22636300	+	0	NA	Intergenic	L1PBa|LINE|L1	-10102	NM_022725	2188		NM_022725	ENSG00000183161	FANCF	FAF	FA complementation group F	protein-coding
216379	chr8	17884221	17884480	+	0	NA	intron (NM_201553, intron 3 of 8)	AluSx|SINE|Alu	11054	NM_201553	2267		NM_004467	ENSG00000104760	FGL1	HFREP1|HP-041|HPS|LFIRE-1|LFIRE1	fibrinogen like 1	protein-coding
117449	chr19	19671621	19671900	+	0	NA	intron (NM_033204, intron 1 of 3)	AluY|SINE|Alu	2921	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
106241	chr18	11977951	11978830	+	0	NA	Intergenic	AluY|SINE|Alu	-3117	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
14101	chr1	120918171	120918330	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-4136	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
125088	chr2	9705371	9705730	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-74553	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
131550	chr2	96765321	96765700	+	0	NA	intron (NM_020184, intron 1 of 6)	L2c|LINE|L2	4608	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
137178	chr2	191126151	191126830	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	24504	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
128003	chr2	47020051	47020180	+	0	NA	intron (NM_020458, intron 11 of 19)	intron (NM_020458, intron 11 of 19)	-78260	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
19164	chr1	171743301	171743900	+	0	NA	Intergenic	FRAM|SINE|Alu	-1535	NR_033704	8674		NM_003762	ENSG00000117533	VAMP4	VAMP-4|VAMP24	vesicle associated membrane protein 4	protein-coding
18238	chr1	161045401	161046830	+	0	NA	promoter-TSS (NM_007122)	promoter-TSS (NM_007122)	-138	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
2473	chr1	9661751	9661850	+	0	NA	intron (NM_005026, intron 1 of 23)	AluY|SINE|Alu	-7214	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
124714	chr2	3605021	3606050	+	0	NA	promoter-TSS (NM_001255989)	promoter-TSS (NM_001255989)	-517	NM_001255988	78989		NM_024027	ENSG00000118004	COLEC11	3MC2|CL-11|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
79511	chr16	799101	799600	+	0	NA	intron (NM_016541, intron 1 of 2)	intron (NM_016541, intron 1 of 2)	1384	NM_016541	51764		NM_016541	ENSG00000127588	GNG13	G(gamma)13|HG3J|h2-35	G protein subunit gamma 13	protein-coding
53915	chr12	71661051	71661150	+	0	NA	intron (NM_144982, intron 1 of 34)	AluY|SINE|Alu	2748	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
89446	chr16	88978521	88979050	+	0	NA	Intergenic	Intergenic	-1578	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
221209	chr8	120808501	120809400	+	0	NA	intron (NM_021021, intron 1 of 6)	MamRep1879|DNA|hAT-Tip100?	3096	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
70252	chr14	101595801	101596850	+	0	NA	Intergenic	Intergenic	34974	NM_001362	1735		NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	iodothyronine deiodinase 3	protein-coding
168438	chr3	142595951	142597030	+	0	NA	promoter-TSS (NM_001145319)	promoter-TSS (NM_001145319)	97	NM_001145319	5357		NM_002670	ENSG00000120756	PLS1	DFNA76	plastin 1	protein-coding
161635	chr3	43296601	43297450	+	0	NA	intron (NM_001330750, intron 1 of 4)	intron (NM_001330750, intron 1 of 4)	10485	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
7489	chr1	33237471	33238230	+	0	NA	Intergenic	Intergenic	-18642	NM_152493	149076		NM_152493	ENSG00000160094	ZNF362	RN|lin-29	zinc finger protein 362	protein-coding
155812	chr22	39316201	39317230	+	0	NA	TTS (NR_000026)	TTS (NR_000026)	181	NR_000026	116936		NR_000026		SNORD139	RNU86|U82|U86	small nucleolar RNA, C/D box 139	snoRNA
115892	chr19	16582151	16582830	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-10075	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
180570	chr5	14706471	14707730	+	0	NA	3' UTR (NM_054027, exon 12 of 12)	3' UTR (NM_054027, exon 12 of 12)	-5594	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
234662	chrX	20141171	20143150	+	0	NA	promoter-TSS (NM_001412)	promoter-TSS (NM_001412)	-322	NM_001412	1964		NM_001412	ENSG00000173674	EIF1AX	EIF1A|EIF1AP1|EIF4C|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A X-linked	protein-coding
3538	chr1	16094501	16094700	+	0	NA	Intergenic	Intergenic	-20949	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
70434	chr14	102041221	102042000	+	0	NA	exon (NM_001376, exon 65 of 78)	exon (NM_001376, exon 65 of 78)	45434	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
126416	chr2	27703501	27704100	+	0	NA	Intergenic	Intergenic	11932	NR_135200	100129995		NR_135200	ENSG00000205334	LINC01460	-	long intergenic non-protein coding RNA 1460	ncRNA
102910	chr17	76563551	76563650	+	0	NA	non-coding (NR_038111, exon 3 of 3)	non-coding (NR_038111, exon 3 of 3)	1967	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
107355	chr18	45911251	45911350	+	0	NA	intron (NM_020964, intron 22 of 43)	AluY|SINE|Alu	56029	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
7258	chr1	32357621	32358200	+	0	NA	Intergenic	Intergenic	4333	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
15820	chr1	151304671	151304830	+	0	NA	intron (NM_001369628, intron 5 of 12)	AluSz|SINE|Alu	22451	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
43953	chr11	93662951	93663480	+	0	NA	intron (NM_033395, intron 1 of 29)	LTR16B2|LTR|ERVL	1533	NM_033395	85459		NM_033395	ENSG00000166004	CEP295	KIAA1731|SCKL11	centrosomal protein 295	protein-coding
202078	chr6	154249471	154250900	+	0	NA	intron (NM_001130700, intron 3 of 11)	intron (NM_001130700, intron 3 of 11)	79896	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
87314	chr16	70188201	70188900	+	0	NA	intron (NR_135173, intron 1 of 1)	CpG	228	NR_135173	105371328		NR_135173		LOC105371328	-	uncharacterized LOC105371328	ncRNA
40678	chr11	64762121	64762460	+	0	NA	Intergenic	Intergenic	-1575	NM_001164716	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
223250	chr8	143661851	143662150	+	0	NA	Intergenic	Intergenic	12216	NM_014789	9831		NM_014789	ENSG00000183309	ZNF623	-	zinc finger protein 623	protein-coding
177513	chr4	118280771	118281330	+	0	NA	3' UTR (NM_003619, exon 13 of 13)	3' UTR (NM_003619, exon 13 of 13)	1860	NR_002963	677809		NR_002963	ENSG00000275994	SNORA24	ACA24|SNORA24A	small nucleolar RNA, H/ACA box 24	snoRNA
148245	chr20	63643571	63643730	+	0	NA	intron (NM_001276310, intron 3 of 4)	intron (NM_001276310, intron 3 of 4)	9116	NM_001276310	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
217424	chr8	28400571	28401400	+	0	NA	Intergenic	Intergenic	-14525	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
57709	chr12	122864401	122865030	+	0	NA	TTS (NM_024667)	TTS (NM_024667)	29258	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
218632	chr8	56213501	56213700	+	0	NA	intron (NR_133936, intron 2 of 5)	AluSg|SINE|Alu	1811	NM_001011671	79145		NM_024300	ENSG00000170791	CHCHD7	COX23	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding
191860	chr6	15263901	15264100	+	0	NA	intron (NM_001267040, intron 1 of 17)	AluJb|SINE|Alu	15145	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
150770	chr21	43804171	43805950	+	0	NA	TTS (NR_026961)	TTS (NR_026961)	7507	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
32910	chr10	110204501	110205100	+	0	NA	Intergenic	Intergenic	-2805	NM_130439	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
224730	chr9	21615301	21615500	+	0	NA	Intergenic	MIRc|SINE|MIR	-55602	NR_152878	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
53727	chr12	68627951	68628250	+	0	NA	promoter-TSS (NR_033335)	promoter-TSS (NR_033335)	-725	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
132232	chr2	102355401	102356680	+	0	NA	promoter-TSS (NM_001282399)	promoter-TSS (NM_001282399)	-243	NM_001282399	8809		NM_003855	ENSG00000115604	IL18R1	CD218a|CDw218a|IL-18R-alpha|IL-18Ralpha|IL-1Rrp|IL18RA|IL18Ralpha2|IL1RRP	interleukin 18 receptor 1	protein-coding
48344	chr12	9327251	9327630	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-40024	NR_120479	101930452		NR_120479	ENSG00000260423	LINC02367	-	long intergenic non-protein coding RNA 2367	ncRNA
184829	chr5	111313171	111313800	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	89101	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
76848	chr15	77819321	77819580	+	0	NA	promoter-TSS (NM_001301194)	promoter-TSS (NM_001301194)	2	NM_001301194	84894		NM_032808	ENSG00000169783	LINGO1	LERN1|LRRN6A|MRT64|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
52143	chr12	54221021	54221350	+	0	NA	Intergenic	Intergenic	10291	NR_039851	100616400		NR_039851	ENSG00000283803	MIR3198-2	mir-3198-2	microRNA 3198-2	ncRNA
28221	chr10	45249801	45250480	+	0	NA	Intergenic	Intergenic	65468	NM_001004297	79290		NM_001004297	ENSG00000256574	OR13A1	-	olfactory receptor family 13 subfamily A member 1	protein-coding
197364	chr6	73466221	73466680	+	0	NA	intron (NM_133645, intron 2 of 12)	intron (NM_133645, intron 2 of 12)	4713	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
180327	chr5	6448621	6449280	+	0	NA	promoter-TSS (NM_001145161)	promoter-TSS (NM_001145161)	91	NM_001145161	134111		NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 QL1	protein-coding
173356	chr4	7844101	7844900	+	0	NA	intron (NM_001371091, intron 5 of 17)	L2b|LINE|L2	27808	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
194205	chr6	32179921	32180380	+	0	NA	TTS (NM_001206936)	TTS (NM_001206936)	334	NR_106891	102465500		NR_106891	ENSG00000277264	MIR6833	hsa-mir-6833	microRNA 6833	ncRNA
202934	chr6	160464451	160464750	+	0	NA	Intergenic	Intergenic	46524	NR_028092	80350		NM_024492	ENSG00000290613	LPAL2	APOA2|APOAL|APOARGC|apo(a)rg-C	lipoprotein(a) like 2 (pseudogene)	pseudo
140771	chr2	235270971	235271200	+	0	NA	Intergenic	Intergenic	-222958	NM_001037131	116987		NM_014914	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
76141	chr15	72599971	72600200	+	0	NA	3' UTR (NM_005744, exon 14 of 14)	3' UTR (NM_005744, exon 14 of 14)	12868	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
113287	chr19	8543621	8544230	+	0	NA	intron (NM_012335, intron 14 of 27)	(GGTGGT)n|Simple_repeat|Simple_repeat	-29758	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
180243	chr5	1633221	1634280	+	0	NA	intron (NR_003713, intron 1 of 3)	CpG	255	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
69338	chr14	93952651	93952950	+	0	NA	intron (NM_016150, intron 3 of 7)	MIR|SINE|MIR	4247	NM_016150	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
176480	chr4	89829501	89829900	+	0	NA	intron (NR_164676, intron 1 of 4)	Tigger6a|DNA|TcMar-Tigger	6540	NM_001375288	6622		NM_000345	ENSG00000145335	SNCA	NACP|PARK1|PARK4|PD1	synuclein alpha	protein-coding
88687	chr16	85759571	85760100	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-8739	NR_161453	404550		NM_206967	ENSG00000154102	C16orf74	-	chromosome 16 open reading frame 74	protein-coding
25130	chr10	4074251	4074800	+	0	NA	intron (NR_120632, intron 1 of 3)	L1ME1|LINE|L1	22799	NR_120632								
502	chr1	1195371	1195930	+	0	NA	intron (NM_001371649, intron 13 of 15)	AluJo|SINE|Alu	10942	NM_148902	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
165593	chr3	101637971	101638330	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-38280	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
56501	chr12	116276601	116278900	+	0	NA	promoter-TSS (NM_015335)	promoter-TSS (NM_015335)	-57	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
189966	chr5	177437201	177438000	+	0	NA	TTS (NR_038915)	TTS (NR_038915)	-8395	NM_001375593	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
213084	chr7	131097501	131098330	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	9115	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
82289	chr16	15590171	15591720	+	0	NA	Intergenic	MIR|SINE|MIR	20150	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
158026	chr22	49920251	49920680	+	0	NA	intron (NM_001135101, intron 4 of 10)	intron (NM_001135101, intron 4 of 10)	1831	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
220422	chr8	100287121	100287380	+	0	NA	intron (NM_183419, intron 2 of 9)	intron (NM_183419, intron 2 of 9)	14943	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
38326	chr11	44286221	44286600	+	0	NA	intron (NM_021926, intron 1 of 3)	intron (NM_021926, intron 1 of 3)	23729	NM_021926	60529		NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
168867	chr3	152291301	152292030	+	0	NA	intron (NM_001376823, intron 1 of 10)	L2a|LINE|L2	-7349	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
133509	chr2	120007001	120007300	+	0	NA	Intergenic	AluSp|SINE|Alu	-5927	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
128309	chr2	54642601	54643000	+	0	NA	intron (NM_178313, intron 17 of 30)	intron (NM_178313, intron 17 of 30)	-82212	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
203507	chr7	620001	620430	+	0	NA	intron (NM_001164759, intron 4 of 10)	L1M5|LINE|L1	16817	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
236021	chrX	55025951	55026050	+	0	NA	exon (NM_001037968, exon 3 of 11)	exon (NM_001037968, exon 3 of 11)	4977	NM_001037967	212		NM_000032	ENSG00000158578	ALAS2	ALAS-E|ALASE|ANH1|ASB|SIDBA1|XLDPP|XLEPP|XLSA	5'-aminolevulinate synthase 2	protein-coding
154448	chr22	35392251	35392550	+	0	NA	intron (NM_002133, intron 4 of 4)	intron (NM_002133, intron 4 of 4)	-7740	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
35303	chr11	1024401	1024600	+	0	NA	intron (NM_005961, intron 24 of 32)	intron (NM_005961, intron 24 of 32)	12218	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
71535	chr14	106209701	106210180	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-77734	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
72503	chr15	33126071	33126830	+	0	NA	intron (NM_001277313, intron 4 of 20)	intron (NM_001277313, intron 4 of 20)	-58276	NM_001103184	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
216073	chr8	10631651	10631950	+	0	NA	intron (NM_178857, intron 1 of 3)	intron (NM_178857, intron 1 of 3)	23343	NM_178857	94137		NM_178857	ENSG00000183638	RP1L1	DCDC4B|OCMD|RP88	RP1 like 1	protein-coding
40367	chr11	63987771	63987930	+	0	NA	intron (NR_003089, intron 1 of 5)	intron (NR_003089, intron 1 of 5)	1997	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
109771	chr19	1129071	1129900	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	2736	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
225542	chr9	35816751	35817450	+	0	NA	non-coding (NR_052026, exon 8 of 8)	non-coding (NR_052026, exon 8 of 8)	-2058	NM_032593	84681		NM_032593	ENSG00000137133	HINT2	HIT-17	histidine triad nucleotide binding protein 2	protein-coding
82938	chr16	21844121	21844950	+	0	NA	intron (NM_001310148, intron 3 of 7)	AluSc|SINE|Alu	13122	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
30732	chr10	84137151	84137550	+	0	NA	Intergenic	Intergenic	-2159	NM_014394	27069		NM_014394	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
93244	chr17	17914001	17914250	+	0	NA	intron (NM_001082968, intron 1 of 14)	intron (NM_001082968, intron 1 of 14)	58275	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
139258	chr2	219435901	219436100	+	0	NA	intron (NM_005876, intron 1 of 40)	intron (NM_005876, intron 1 of 40)	1157	NM_005876	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
172614	chr4	2510371	2510730	+	0	NA	intron (NM_001185009, intron 5 of 8)	intron (NM_001185009, intron 5 of 8)	-24825	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
224366	chr9	7756171	7756430	+	0	NA	Intergenic	Intergenic	43478	NM_033428	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
123447	chr19	54136301	54139750	+	0	NA	intron (NM_014516, intron 1 of 17).8	CpG	263	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
40169	chr11	62887951	62888050	+	0	NA	intron (NM_001012662, intron 10 of 11)	AluJr|SINE|Alu	6301	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
150123	chr21	37517271	37517830	+	0	NA	3' UTR (NM_001347722, exon 12 of 12)	3' UTR (NM_001347722, exon 12 of 12)	97251	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
15738	chr1	151072401	151072980	+	0	NA	intron (NM_144618, intron 1 of 8)	AluSq2|SINE|Alu	1929	NM_001323912	126626		NM_144618	ENSG00000143458	GABPB2	GABPB-2	GA binding protein transcription factor subunit beta 2	protein-coding
171805	chr4	577171	577680	+	0	NA	non-coding (NR_148199, exon 1 of 3)	non-coding (NR_148199, exon 1 of 3)	257	NR_148199	105374338		NR_148199	ENSG00000283183	LOC105374338	-	uncharacterized LOC105374338	ncRNA
84672	chr16	30758501	30759550	+	0	NA	exon (NM_001014979, exon 8 of 9)	exon (NM_001014979, exon 8 of 9)	-2587	NM_001207034	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
227319	chr9	89436951	89438430	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	42200	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
98417	chr17	46632171	46632480	+	0	NA	intron (NR_033799, intron 4 of 6).2	intron (NR_033799, intron 4 of 6).2	41591	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
44710	chr11	111598621	111598880	+	0	NA	Intergenic	Intergenic	-3699	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
121765	chr19	47760951	47761530	+	0	NA	intron (NR_132382, intron 2 of 2)	AluJr|SINE|Alu	5387	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
164198	chr3	56860801	56861400	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	55336	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
30474	chr10	79239851	79240150	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-107469	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
105402	chr17	82767021	82767550	+	0	NA	intron (NM_005993, intron 4 of 38)	intron (NM_005993, intron 4 of 38)	15220	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
115725	chr19	16248771	16249130	+	0	NA	Intergenic	Intergenic	51039	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
9899	chr1	54376501	54376930	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	29679	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
162230	chr3	47134521	47134780	+	0	NA	intron (NR_146158, intron 1 of 21)	AluSz|SINE|Alu	29463	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
62664	chr13	102581921	102582530	+	0	NA	Intergenic	Tigger17c|DNA|TcMar-Tigger	-14761	NM_003291	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
99979	chr17	57605401	57606330	+	0	NA	intron (NR_110807, intron 2 of 2)	intron (NR_110807, intron 2 of 2)	2547	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
174260	chr4	38094301	38094500	+	0	NA	intron (NM_015173, intron 13 of 19)	intron (NM_015173, intron 13 of 19)	-15781	NM_001253913	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
17845	chr1	159917401	159917780	+	0	NA	TTS (NM_003564)	TTS (NM_003564)	6144	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
65983	chr14	57268251	57269910	+	0	NA	promoter-TSS (NM_006544)	promoter-TSS (NM_006544)	109	NM_018229	55745		NM_018229	ENSG00000053770	AP5M1	C14orf108|MUDENG|Mu5|MuD	adaptor related protein complex 5 subunit mu 1	protein-coding
168361	chr3	141893801	141894530	+	0	NA	intron (NM_001679, intron 1 of 6)	Tigger3b|DNA|TcMar-Tigger	17522	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
39209	chr11	57527051	57527800	+	0	NA	Intergenic	Intergenic	3329	NM_012456	26519		NM_012456	ENSG00000134809	TIMM10	TIM10|TIM10A|TIMM10A	translocase of inner mitochondrial membrane 10	protein-coding
232802	chr9	136709621	136710680	+	0	NA	Intergenic	Intergenic	-2422	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
111853	chr19	4593701	4593900	+	0	NA	Intergenic	AluSq2|SINE|Alu	-34116	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
15569	chr1	150559051	150559350	+	0	NA	TTS (NM_025008)	TTS (NM_025008)	7271	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
11561	chr1	91282801	91283150	+	0	NA	intron (NR_165455, intron 24 of 32)	intron (NR_165455, intron 24 of 32)	121760	NR_165455	164045		NM_001017975	ENSG00000162669	HFM1	MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase	helicase for meiosis 1	protein-coding
42032	chr11	67433021	67434000	+	0	NA	intron (NM_003952, intron 10 of 14)	intron (NM_003952, intron 10 of 14)	4172	NM_005608	5790		NM_005608	ENSG00000213402	PTPRCAP	CD45-AP|LPAP	protein tyrosine phosphatase receptor type C associated protein	protein-coding
233035	chr9	137041601	137042000	+	0	NA	intron (NM_015392, intron 2 of 8)	intron (NM_015392, intron 2 of 8)	4377	NM_015392	56654		NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
225797	chr9	37510151	37510450	+	0	NA	TTS (NM_012166)	TTS (NM_012166)	24352	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
27074	chr10	27236851	27237650	+	0	NA	intron (NM_001352582, intron 2 of 11)	L2c|LINE|L2	3236	NM_001301252	91452		NM_145698	ENSG00000107897	ACBD5	RDLKD	acyl-CoA binding domain containing 5	protein-coding
86603	chr16	67294371	67294530	+	0	NA	intron (NM_001100915, intron 11 of 15)	intron (NM_001100915, intron 11 of 15)	14918	NM_001129729	25894		NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
51784	chr12	53350421	53350680	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5757	NM_001300837	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
169894	chr3	177596401	177596600	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	154579	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
10743	chr1	76270221	76270850	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	195789	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
189612	chr5	175967401	175968750	+	0	NA	exon (NM_001376902, exon 1 of 5)	exon (NM_001376902, exon 1 of 5)	240	NM_001376902	84321		NM_032361	ENSG00000051596	THOC3	THO3|hTREX45	THO complex subunit 3	protein-coding
71114	chr14	104926721	104927130	+	0	NA	intron (NM_138790, intron 1 of 10)	intron (NM_138790, intron 1 of 10)	2046	NM_001308174	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
117476	chr19	19756171	19756780	+	0	NA	non-coding (NR_026956, exon 3 of 3)	non-coding (NR_026956, exon 3 of 3)	19938	NR_026956	284440		NM_182576		LINC00663	-	long intergenic non-protein coding RNA 663	ncRNA
216346	chr8	16779821	16780100	+	0	NA	Intergenic	Intergenic	222385	NM_019851	26281		NM_019851	ENSG00000078579	FGF20	FGF-20|RHDA2	fibroblast growth factor 20	protein-coding
2580	chr1	9807621	9807880	+	0	NA	intron (NM_014944, intron 1 of 17)	intron (NM_014944, intron 1 of 17)	16215	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
175924	chr4	80266371	80267200	+	0	NA	5' UTR (NM_004464, exon 1 of 3)	5' UTR (NM_004464, exon 1 of 3)	197	NM_033143	2250		NM_004464	ENSG00000138675	FGF5	HBGF-5|Smag-82|TCMGLY	fibroblast growth factor 5	protein-coding
218555	chr8	54104601	54105400	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2983	NM_001279356	10434		NM_006330	ENSG00000120992	LYPLA1	APT-1|APT1|LPL-I|LPL1|hAPT1	lysophospholipase 1	protein-coding
144779	chr20	36629671	36630800	+	0	NA	intron (NM_175077, intron 5 of 7)	intron (NM_175077, intron 5 of 7)	15961	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
172713	chr4	2798501	2799550	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	5940	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
60249	chr13	40583821	40584280	+	0	NA	intron (NM_002015, intron 1 of 2)	Tigger1|DNA|TcMar-Tigger	82591	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
26484	chr10	17683001	17683400	+	0	NA	intron (NM_001324285, intron 3 of 14)	AluJb|SINE|Alu	39049	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
158277	chr22	50344751	50346030	+	0	NA	intron (NM_001351641, intron 1 of 23)	intron (NM_001351641, intron 1 of 23)	2063	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
162384	chr3	48086221	48086480	+	0	NA	intron (NM_001384729, intron 1 of 20)	intron (NM_001384729, intron 1 of 20)	2498	NM_001384861	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
112828	chr19	7525601	7525800	+	0	NA	intron (NM_020533, intron 2 of 13)	L2b|LINE|L2	3076	NM_020533	57192		NM_020533	ENSG00000090674	MCOLN1	LECD|MG-2|ML1|ML4|MLIV|MST080|MSTP080|TRP-ML1|TRPM-L1|TRPML1	mucolipin TRP cation channel 1	protein-coding
11292	chr1	89262001	89262530	+	0	NA	exon (NM_052942, exon 11 of 12)	exon (NM_052942, exon 11 of 12)	10595	NM_001134486	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
23963	chr1	235158101	235158300	+	0	NA	intron (NR_144491, intron 2 of 9)	AluSq2|SINE|Alu	3050	NR_027762	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
61466	chr13	52197701	52197900	+	0	NA	Intergenic	AluSp|SINE|Alu	-3333	NR_002816	100887750		NR_002816	ENSG00000291010	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
180821	chr5	32445701	32446280	+	0	NA	Intergenic	Intergenic	-1250	NR_144318	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
171661	chr3	197666571	197667180	+	0	NA	Intergenic	Intergenic	7701	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
192201	chr6	17705621	17706300	+	0	NA	promoter-TSS (NR_134616)	promoter-TSS (NR_134616)	-170	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
70772	chr14	103499871	103500980	+	0	NA	intron (NM_001128918, intron 17 of 17)	intron (NM_001128918, intron 17 of 17)	22405	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
175199	chr4	56640851	56641550	+	0	NA	Intergenic	Intergenic	15322	NM_139211	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
161552	chr3	42660321	42661250	+	0	NA	intron (NM_145166, intron 2 of 5)	intron (NM_145166, intron 2 of 5)	-6397	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
127289	chr2	38737951	38738430	+	0	NA	Intergenic	L1M4a2|LINE|L1	13171	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
84225	chr16	29971101	29971600	+	0	NA	intron (NM_001369690, intron 4 of 4)	intron (NM_001369690, intron 4 of 4)	-2518	NM_004783	9344		NM_004783	ENSG00000149930	TAOK2	MAP3K17|PSK|PSK1|PSK1-BETA|TAO1|TAO2|Tao2beta	TAO kinase 2	protein-coding
21729	chr1	206790701	206790900	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-18306	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
25721	chr10	9014051	9014550	+	0	NA	Intergenic	Intergenic	116311	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
63863	chr14	21712101	21713330	+	0	NA	Intergenic	Intergenic	-41698	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
64613	chr14	30657571	30657730	+	0	NA	intron (NM_001257376, intron 8 of 22)	intron (NM_001257376, intron 8 of 22)	35331	NM_001257376	23256		NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
31575	chr10	97332371	97332850	+	0	NA	3' UTR (NM_012083, exon 1 of 1)	3' UTR (NM_012083, exon 1 of 1)	2119	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
4511	chr1	21777021	21777280	+	0	NA	intron (NM_001350166, intron 1 of 26)	AluJo|SINE|Alu	5999	NM_001350164	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
162017	chr3	46494601	46494800	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-3276	NM_031440	83597		NM_031440	ENSG00000163825	RTP3	LTM1|TMEM7|Z3CXXC3	receptor transporter protein 3	protein-coding
137062	chr2	190897601	190897930	+	0	NA	intron (NM_014905, intron 3 of 17)	intron (NM_014905, intron 3 of 17)	16944	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
175042	chr4	52861551	52863130	+	0	NA	promoter-TSS (NM_023940)	promoter-TSS (NM_023940)	23	NM_023940	65997		NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding
1051	chr1	1894051	1894300	+	0	NA	Intergenic	Intergenic	2995	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
38096	chr11	35211001	35211750	+	0	NA	exon (NM_000610, exon 14 of 18)	exon (NM_000610, exon 14 of 18)	48425	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
6590	chr1	28763121	28763380	+	0	NA	intron (NM_016258, intron 4 of 4)	intron (NM_016258, intron 4 of 4)	26310	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
89628	chr16	89321151	89321700	+	0	NA	intron (NR_168302, intron 1 of 3)	intron (NR_168302, intron 1 of 3)	973	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
222184	chr8	133032701	133032900	+	0	NA	intron (NM_003235, intron 41 of 47)	MIRc|SINE|MIR	13781	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
86069	chr16	57603271	57603700	+	0	NA	Intergenic	Intergenic	-16253	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
56429	chr12	113360301	113360950	+	0	NA	intron (NM_173542, intron 1 of 11)	intron (NM_173542, intron 1 of 11)	2038	NM_173542	196463		NM_173542	ENSG00000151176	PLBD2	P76	phospholipase B domain containing 2	protein-coding
97118	chr17	42523921	42524650	+	0	NA	Intergenic	L1MB8|LINE|L1	10097	NR_049808	100847046		NR_049808	ENSG00000283929	MIR5010	mir-5010	microRNA 5010	ncRNA
8668	chr1	41894521	41895500	+	0	NA	intron (NR_038260, intron 1 of 2)	intron (NR_038260, intron 1 of 2)	23912	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
156051	chr22	39981701	39981900	+	0	NA	Intergenic	AluSg|SINE|Alu	-13154	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
147326	chr20	57999451	57999750	+	0	NA	Intergenic	L1ME2z|LINE|L1	-4304	NR_147083	105376992		NR_147083	ENSG00000275852	LINC01742	-	long intergenic non-protein coding RNA 1742	ncRNA
220950	chr8	109333471	109335030	+	0	NA	promoter-TSS (NR_036471)	promoter-TSS (NR_036471)	-97	NR_036472	56943		NM_020189	ENSG00000120533	ENY2	DC6|Sus1|e(y)2	ENY2 transcription and export complex 2 subunit	protein-coding
224398	chr9	14321951	14322900	+	0	NA	promoter-TSS (NM_001369472)	promoter-TSS (NM_001369472)	-38	NM_001369466	4781		NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
78604	chr15	93164421	93164730	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-41491	NM_001365393								
227013	chr9	83804401	83804680	+	0	NA	intron (NM_025211, intron 3 of 12)	SVA_D|Retroposon|SVA	13229	NM_025211	80318		NM_025211	ENSG00000165113	GKAP1	FKSG21|GKAP42	G kinase anchoring protein 1	protein-coding
25883	chr10	11262471	11263030	+	0	NA	intron (NM_001326346, intron 4 of 11)	intron (NM_001326346, intron 4 of 11)	81924	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
167119	chr3	127675771	127676750	+	0	NA	intron (NM_172027, intron 4 of 11)	intron (NM_172027, intron 4 of 11)	3308	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
172136	chr4	1192771	1193200	+	0	NA	intron (NM_001199021, intron 1 of 7)	intron (NM_001199021, intron 1 of 7)	15977	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
164166	chr3	56782601	56783300	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-7233	NM_001377413	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
192080	chr6	16667871	16668030	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	92234	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
120106	chr19	42159921	42160380	+	0	NA	Intergenic	Intergenic	-26637	NR_036208	100422980		NR_036208	ENSG00000266226	MIR4323	-	microRNA 4323	ncRNA
213536	chr7	139088621	139089330	+	0	NA	intron (NM_020119, intron 2 of 12)	AluSx1|SINE|Alu	20745	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
106823	chr18	24000521	24001200	+	0	NA	intron (NR_110796, intron 4 of 5)	MIRc|SINE|MIR	7973	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
202162	chr6	155304221	155304780	+	0	NA	intron (NR_146725, intron 2 of 8)	L1ME1|LINE|L1	9984	NM_001350501	51106		NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
220600	chr8	100912171	100912780	+	0	NA	Intergenic	AluSp|SINE|Alu	38096	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
228161	chr9	96941871	96942370	+	0	NA	TTS (NM_001355230)	TTS (NM_001355230)	13277	NM_001045477	441457		NM_001024597	ENSG00000188152	NUTM2G	FAM22G|NUTMG	NUT family member 2G	protein-coding
91370	chr17	4542951	4543250	+	0	NA	exon (NM_001105538, exon 20 of 27)	exon (NM_001105538, exon 20 of 27)	12284	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
97811	chr17	44831751	44832050	+	0	NA	Intergenic	Intergenic	-1089	NM_001080383	10052		NM_005497	ENSG00000182963	GJC1	CX45|GJA7	gap junction protein gamma 1	protein-coding
13651	chr1	116535751	116535850	+	0	NA	intron (NR_026665, intron 3 of 5)	AluY|SINE|Alu	24311	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
107967	chr18	58502251	58502800	+	0	NA	intron (NM_052947, intron 11 of 12)	MIR|SINE|MIR	-51373	NR_039899	100616357		NR_039899	ENSG00000207778	MIR3591	-	microRNA 3591	ncRNA
237969	chrX	133922851	133923400	+	0	NA	intron (NM_001164619, intron 1 of 6)	(AC)n|Simple_repeat|Simple_repeat	25682	NR_148713	110806308		NR_148713	ENSG00000286096	GPC3-AS1	-	GPC3 antisense RNA 1	ncRNA
183943	chr5	87441321	87441580	+	0	NA	Intergenic	AluSg7|SINE|Alu	-28417	NM_001363539	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
105174	chr17	82272201	82274330	+	0	NA	intron (NM_139062, intron 1 of 9)	CpG	435	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
213811	chr7	141052101	141052300	+	0	NA	Intergenic	Intergenic	-21864	NM_001195278	100507421		NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
110987	chr19	3027921	3030330	+	0	NA	5' UTR (NM_001300846, exon 1 of 20)	5' UTR (NM_001300846, exon 1 of 20)	155	NM_001300846	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
146050	chr20	47360321	47360980	+	0	NA	Intergenic	Intergenic	-3761	NM_001281769	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
20357	chr1	197913101	197913850	+	0	NA	intron (NM_001014434, intron 1 of 5)	intron (NM_001014434, intron 1 of 5)	970	NM_001014434	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
121839	chr19	48168371	48168700	+	0	NA	intron (NR_135497, intron 1 of 27)	L1MC|LINE|L1	1809	NR_135497	3978		NM_000234	ENSG00000105486	LIG1	IMD96|LIGI|hLig1	DNA ligase 1	protein-coding
238056	chrX	135524521	135525000	+	0	NA	intron (NM_001351601, intron 2 of 17)	intron (NM_001351601, intron 2 of 17)	-4086	NR_046740	100874118		NR_046740	ENSG00000225235	INTS6L-AS1	DDX26B-AS1	INTS6L antisense RNA 1	ncRNA
234916	chrX	36986101	36986300	+	0	NA	Intergenic	CpG	-22166	NM_001013736	442444		NM_001013736	ENSG00000198173	FAM47C	-	family with sequence similarity 47 member C	protein-coding
58442	chr12	132051671	132051830	+	0	NA	intron (NM_015409, intron 41 of 52)	LTR13|LTR|ERVK	20526	NR_002979	677829		NR_002979	ENSG00000208892	SNORA49	ACA49	small nucleolar RNA, H/ACA box 49	snoRNA
111289	chr19	3570571	3571330	+	0	NA	Intergenic	L1MB7|LINE|L1	-1994	NM_006339	10362		NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
22129	chr1	211833101	211833950	+	0	NA	intron (NR_135818, intron 2 of 2)	intron (NR_135818, intron 2 of 2)	2564	NR_135820	102723727		NR_135818	ENSG00000229258	LPGAT1-AS1	-	LPGAT1 antisense RNA 1	ncRNA
76647	chr15	75635971	75636530	+	0	NA	Intergenic	L1MB4|LINE|L1	3974	NM_018285	55272		NM_018285	ENSG00000177971	IMP3	BRMS2|C15orf12|MRPS4	IMP U3 small nucleolar ribonucleoprotein 3	protein-coding
161756	chr3	44728151	44728450	+	0	NA	Intergenic	AluSg|SINE|Alu	-1306	NM_145044	115560		NM_145044	ENSG00000186446	ZNF501	ZNF|ZNF52	zinc finger protein 501	protein-coding
225779	chr9	37432671	37433230	+	0	NA	intron (NM_012203, intron 8 of 8)	LTR50|LTR|ERVL	10254	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
144797	chr20	36643901	36645080	+	0	NA	intron (NM_175077, intron 1 of 7)	intron (NM_175077, intron 1 of 7)	1706	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
154467	chr22	35550551	35551100	+	0	NA	intron (NM_001376516, intron 2 of 2)	MIRb|SINE|MIR	9994	NM_014310	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
80009	chr16	1919151	1919500	+	0	NA	promoter-TSS (NM_001009606)	promoter-TSS (NM_001009606)	-910	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
40877	chr11	65112401	65113780	+	0	NA	intron (NM_003273, intron 3 of 9)	intron (NM_003273, intron 3 of 9)	1218	NM_003273	7108		NM_003273	ENSG00000149809	TM7SF2	ANG1|C14SR|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
16894	chr1	155863471	155863630	+	0	NA	intron (NM_152280, intron 1 of 3)	AluJr4|SINE|Alu	3983	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
70576	chr14	102606471	102607030	+	0	NA	intron (NM_015156, intron 2 of 11)	AluJb|SINE|Alu	14101	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
168848	chr3	152273701	152274330	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-4389	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
119696	chr19	41118501	41119300	+	0	NA	intron (NR_135528, intron 3 of 9)	L2c|LINE|L2	4468	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
159616	chr3	15266651	15267050	+	0	NA	intron (NM_004844, intron 4 of 8)	intron (NM_004844, intron 4 of 8)	12666	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
126541	chr2	28582171	28582330	+	0	NA	intron (NM_153021, intron 24 of 57)	intron (NM_153021, intron 24 of 57)	15893	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
3397	chr1	15738951	15739250	+	0	NA	TTS (NR_149050)	TTS (NR_149050)	2842	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
219190	chr8	66605401	66605600	+	0	NA	intron (NM_001294282, intron 1 of 14)	intron (NM_001294282, intron 1 of 14)	7718	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
158299	chr22	50395221	50395480	+	0	NA	intron (NM_001351648, intron 3 of 22)	intron (NM_001351648, intron 3 of 22)	-12092	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
118219	chr19	35169601	35170630	+	0	NA	TTS (NM_001320912)	TTS (NM_001320912)	15380	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
60587	chr13	41950271	41950600	+	0	NA	intron (NM_015058, intron 1 of 44)	AluY|SINE|Alu	10650	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
39717	chr11	61760821	61761080	+	0	NA	intron (NM_013279, intron 1 of 25)	intron (NM_013279, intron 1 of 25)	-3286	NR_026882	26070		NR_026882	ENSG00000124915	MYRF-AS1	DKFZP434K028	MYRF antisense RNA 1	ncRNA
29606	chr10	71752321	71753350	+	0	NA	intron (NM_022153, intron 5 of 6)	intron (NM_022153, intron 5 of 6)	-14985	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
49789	chr12	31931901	31932750	+	0	NA	Intergenic	Intergenic	-27090	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
135022	chr2	156191521	156191600	+	0	NA	intron (NR_110250, intron 1 of 3)	intron (NR_110250, intron 1 of 3)	63371	NR_110250	101929378		NR_110249	ENSG00000226383	LINC01876	uc.83	long intergenic non-protein coding RNA 1876	ncRNA
9320	chr1	46543901	46545480	+	0	NA	TTS (NM_001322255)	TTS (NM_001322255)	5994	NR_038403	100507423		NR_038403	ENSG00000269956	MKNK1-AS1	-	MKNK1 antisense RNA 1	ncRNA
102617	chr17	75976251	75976550	+	0	NA	intron (NM_007292, intron 2 of 13)	(CA)n|Simple_repeat|Simple_repeat	2766	NM_004035	51		NM_004035	ENSG00000161533	ACOX1	ACOX|AOX|MITCH|PALMCOX|SCOX	acyl-CoA oxidase 1	protein-coding
232619	chr9	136443251	136443730	+	0	NA	intron (NM_014866, intron 31 of 31)	AluJo|SINE|Alu	-3645	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
232787	chr9	136696451	136696550	+	0	NA	Intergenic	Intergenic	-9043	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
98650	chr17	47824401	47824950	+	0	NA	intron (NR_037575, intron 4 of 4)	intron (NR_037575, intron 4 of 4)	-2881	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
211013	chr7	102362351	102362650	+	0	NA	Intergenic	AluJr|SINE|Alu	-1361	NR_038967	100630923		NR_038967		LOC100630923	-	LOC100289561-PRKRIP1 readthrough	ncRNA
102789	chr17	76368671	76368850	+	0	NA	Intergenic	Intergenic	-14444	NM_001355139	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
91529	chr17	4983601	4984000	+	0	NA	intron (NM_001171166, intron 2 of 20)	AluSx1|SINE|Alu	3661	NM_001171167	23125		NM_015099	ENSG00000108509	CAMTA2	-	calmodulin binding transcription activator 2	protein-coding
95521	chr17	36548251	36549300	+	0	NA	intron (NM_024835, intron 2 of 13)	AluSx|SINE|Alu	3856	NM_024835	79893		NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
189809	chr5	176959101	176959530	+	0	NA	intron (NM_001317961, intron 6 of 14)	intron (NM_001317961, intron 6 of 14)	47127	NM_016290	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
194182	chr6	32119771	32120580	+	0	NA	intron (NM_001136153, intron 8 of 17).4	AluY|SINE|Alu	8071	NM_004381	1388		NM_004381	ENSG00000213676	ATF6B	ATF6beta|CREB-RP|CREBL1|G13	activating transcription factor 6 beta	protein-coding
160554	chr3	30683071	30683230	+	0	NA	intron (NM_001024847, intron 6 of 7)	intron (NM_001024847, intron 6 of 7)	76549	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
32412	chr10	102450201	102451950	+	0	NA	exon (NM_001363580, exon 2 of 2)	exon (NM_001363580, exon 2 of 2)	468	NM_001363580	79946		NM_024886	ENSG00000120055	C10orf95	-	chromosome 10 open reading frame 95	protein-coding
200111	chr6	130201751	130202050	+	0	NA	intron (NM_001258275, intron 7 of 13)	L2b|LINE|L2	13985	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
146834	chr20	51412071	51413000	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	40442	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
72222	chr15	30191171	30191530	+	0	NA	Intergenic	Intergenic	-4686	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
145366	chr20	41158521	41159550	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-9988	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
88888	chr16	87729451	87729800	+	0	NA	intron (NM_001184856, intron 5 of 10)	intron (NM_001184856, intron 5 of 10)	36361	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
4830	chr1	23625951	23626250	+	0	NA	Intergenic	Intergenic	-1234	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
178470	chr4	148378471	148378630	+	0	NA	intron (NR_148974, intron 2 of 6)	MSTA|LTR|ERVL-MaLR	63864	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
131507	chr2	96545251	96545530	+	0	NA	intron (NM_001319092, intron 1 of 6)	AluSx1|SINE|Alu	7511	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
84909	chr16	31218971	31219950	+	0	NA	exon (NM_001008274, exon 4 of 7)	exon (NM_001008274, exon 4 of 7)	-2325	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
201509	chr6	149059201	149059400	+	0	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-26639	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
119940	chr19	41866001	41867150	+	0	NA	intron (NM_001321485, intron 3 of 5)	intron (NM_001321485, intron 3 of 5)	-3052	NR_106855	102465478		NR_106855	ENSG00000276926	MIR6797	hsa-mir-6797	microRNA 6797	ncRNA
213732	chr7	140375501	140376930	+	0	NA	intron (NM_032295, intron 3 of 11)	A-rich|Low_complexity|Low_complexity	22315	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
215008	chr7	152382351	152382450	+	0	NA	intron (NM_170606, intron 1 of 58)	intron (NM_170606, intron 1 of 58)	53603	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
235929	chrX	53192971	53193130	+	0	NA	exon (NM_001353978, exon 26 of 26)	exon (NM_001353978, exon 26 of 26)	2438	NR_106955	102465539		NR_106955	ENSG00000276575	MIR6895	hsa-mir-6895	microRNA 6895	ncRNA
117839	chr19	31348721	31349930	+	0	NA	non-coding (NR_138036, exon 1 of 5)	non-coding (NR_138036, exon 1 of 5)	111	NR_138034	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
105927	chr18	3495701	3495900	+	0	NA	TTS (NM_001242764)	TTS (NM_001242764)	29550	NR_110429	100505592		NR_110428	ENSG00000266835	GAPLINC	LINC01540	gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA	ncRNA
74763	chr15	63236971	63237330	+	0	NA	intron (NM_016530, intron 1 of 7)	L1MA3|LINE|L1	-40400	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
218083	chr8	38936251	38937600	+	0	NA	intron (NM_021623, intron 3 of 11)	intron (NM_021623, intron 3 of 11)	35579	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
26819	chr10	24451521	24451780	+	0	NA	intron (NM_001321681, intron 1 of 13)	intron (NM_001321681, intron 1 of 13)	2236	NM_001282769	56243		NM_019590	ENSG00000120549	KIAA1217	ETL4|SKT	KIAA1217	protein-coding
75488	chr15	66293311	66294780	+	0	NA	5' UTR (NM_001323946, exon 1 of 17)	5' UTR (NM_001323946, exon 1 of 17)	230	NM_001323946	115752		NM_133375	ENSG00000166938	DIS3L	DIS3L1	DIS3 like exosome 3'-5' exoribonuclease	protein-coding
114561	chr19	12894321	12894580	+	0	NA	intron (NM_000159, intron 6 of 11)	intron (NM_000159, intron 6 of 11)	3290	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
204060	chr7	1987821	1988330	+	0	NA	intron (NM_001304524, intron 12 of 16)	intron (NM_001304524, intron 12 of 16)	-47504	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
199225	chr6	111813051	111813370	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-53293	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
99602	chr17	50539871	50540550	+	0	NA	intron (NM_017957, intron 5 of 9)	intron (NM_017957, intron 5 of 9)	-1456	NR_135675	105371824		NR_135675	ENSG00000250286	LOC105371824	-	uncharacterized LOC105371824	ncRNA
67156	chr14	68771621	68772080	+	0	NA	Intergenic	Intergenic	21217	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
88181	chr16	81720221	81720480	+	0	NA	Intergenic	Intergenic	54996	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
214252	chr7	148914221	148914750	+	0	NA	Intergenic	Intergenic	-27003	NR_001571	6090		NR_001571		RNY5	Y5|hY5	RNA, Ro60-associated Y5	ncRNA
198935	chr6	110415501	110415700	+	0	NA	promoter-TSS (NM_004032)	promoter-TSS (NM_004032)	-25	NR_160546	8528		NM_003649	ENSG00000203797	DDO	DASOX|DASPO|DDO-1|DDO-2	D-aspartate oxidase	protein-coding
117765	chr19	29682801	29683400	+	0	NA	Intergenic	Intergenic	17639	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
14607	chr1	145285021	145286000	+	0	NA	Intergenic	FLAM_C|SINE|Alu	4394	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
100785	chr17	64014751	64015380	+	0	NA	intron (NM_001099788, intron 1 of 5)	L1M5|LINE|L1	5568	NM_001099789	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
138816	chr2	216227001	216227450	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	10336	NR_037701	150967		NM_001199924	ENSG00000260804	LINC01963	PKI55	long intergenic non-protein coding RNA 1963	ncRNA
147415	chr20	58870301	58870880	+	0	NA	intron (NR_126334, intron 3 of 4)	intron (NR_126334, intron 3 of 4)	17609	NM_001077490	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
113051	chr19	8054121	8054380	+	0	NA	intron (NM_001201359, intron 2 of 5)	intron (NM_001201359, intron 2 of 5)	1488	NM_005624	6370		NM_005624	ENSG00000131142	CCL25	Ck beta-15|Ckb15|SCYA25|TECK|TECKvar	C-C motif chemokine ligand 25	protein-coding
66919	chr14	65356401	65357180	+	0	NA	Intergenic	Intergenic	-21607	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
123004	chr19	51016701	51017750	+	0	NA	exon (NM_001077500, exon 3 of 6)	exon (NM_001077500, exon 3 of 6)	2484	NM_145888	5655		NM_002776	ENSG00000129451	KLK10	NES1|PRSSL1	kallikrein related peptidase 10	protein-coding
203550	chr7	886701	887450	+	0	NA	intron (NM_015949, intron 3 of 8)	intron (NM_015949, intron 3 of 8)	10521	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
112	chr1	488001	488650	+	0	NA	Intergenic	Intergenic	7120	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
93076	chr17	17588671	17589030	+	0	NA	intron (NM_001267551, intron 1 of 6)	intron (NM_001267551, intron 1 of 6)	2858	NM_001267552	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
138531	chr2	207505751	207506080	+	0	NA	Intergenic	Intergenic	-24047	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123331	chr19	53590021	53590280	+	0	NA	Intergenic	AluSx|SINE|Alu	13347	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
145398	chr20	41480251	41480550	+	0	NA	intron (NM_032221, intron 16 of 36)	HAL1|LINE|L1	-113582	NM_052846	90187		NM_052846	ENSG00000183798	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
211319	chr7	103989471	103989930	+	0	NA	promoter-TSS (NM_005045)	promoter-TSS (NM_005045)	-42	NM_005045	5649		NM_005045	ENSG00000189056	RELN	ETL7|LIS2|PRO1598|RL	reelin	protein-coding
184410	chr5	98916451	98917350	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-11662	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
46109	chr11	122878871	122879030	+	0	NA	Intergenic	Intergenic	-3578	NM_199124	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
131886	chr2	98733571	98733730	+	0	NA	Intergenic	AluJo|SINE|Alu	-2518	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
147688	chr20	62312621	62313380	+	0	NA	exon (NM_005560, exon 66 of 80)	exon (NM_005560, exon 66 of 80)	10003	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
67398	chr14	69790851	69791730	+	0	NA	intron (NM_003049, intron 1 of 4)	L1ME3C|LINE|L1	5951	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
127853	chr2	45642351	45642650	+	0	NA	Intergenic	Intergenic	-9175	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
15493	chr1	150401201	150401600	+	0	NA	intron (NM_015203, intron 1 of 10)	AluSx|SINE|Alu	37289	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
154838	chr22	37075421	37075680	+	0	NA	intron (NM_153609, intron 10 of 17)	MIRb|SINE|MIR	23814	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
95670	chr17	38300101	38300700	+	0	NA	intron (NM_032351, intron 3 of 7)	AluJo|SINE|Alu	3232	NM_032351	84311		NM_032351	ENSG00000278845	MRPL45	L45mt|MRP-L45|Mba1|mL45	mitochondrial ribosomal protein L45	protein-coding
218389	chr8	46469751	46469930	+	0	NA	Intergenic	AluYi6|SINE|Alu	147803	NR_146077	389652		NR_146077	ENSG00000290398	ASNSP1	ASNSL1	ASNS pseudogene 1	pseudo
216891	chr8	22672851	22673750	+	0	NA	Intergenic	Intergenic	-4152	NR_156436	55909		NM_018688	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
13359	chr1	113869921	113870380	+	0	NA	intron (NM_012411, intron 1 of 18)	L2a|LINE|L2	1562	NM_015967	26191		NM_012411	ENSG00000134242	PTPN22	LYP|LYP1|LYP2|PEP|PTPN22.5|PTPN22.6|PTPN8	protein tyrosine phosphatase non-receptor type 22	protein-coding
12839	chr1	110058921	110059380	+	0	NA	TTS (NM_006492)	TTS (NM_006492)	11522	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
235194	chrX	41342051	41342150	+	0	NA	intron (NM_001193417, intron 3 of 15)	intron (NM_001193417, intron 3 of 15)	7934	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
220878	chr8	103445151	103445810	+	0	NA	Intergenic	Intergenic	30094	NM_015420	25879		NM_015420	ENSG00000164934	DCAF13	GM83|HSPC064|Sof1|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
93283	chr17	18108621	18108880	+	0	NA	promoter-TSS (NM_016239)	promoter-TSS (NM_016239)	-6	NM_016239	51168		NM_016239	ENSG00000091536	MYO15A	DFNB3|MYO15	myosin XVA	protein-coding
22097	chr1	211597251	211597750	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-18339	NM_021194	7779		NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
149785	chr21	34895471	34895700	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-6886	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
193956	chr6	31685251	31685880	+	0	NA	Intergenic	AluSx|SINE|Alu	-5192	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
137236	chr2	191680151	191680900	+	0	NA	intron (NR_045623, intron 2 of 6)	intron (NR_045623, intron 2 of 6)	2389	NM_001031716	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
124155	chr19	56083771	56083930	+	0	NA	Intergenic	Intergenic	17166	NR_110741	101928886		NR_110741	ENSG00000267522	LINC01864	-	long intergenic non-protein coding RNA 1864	ncRNA
121476	chr19	47109371	47110080	+	0	NA	intron (NM_015168, intron 2 of 14)	intron (NM_015168, intron 2 of 14)	4051	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
175177	chr4	56261021	56261430	+	0	NA	intron (NM_020722, intron 2 of 10)	intron (NM_020722, intron 2 of 10)	91030	NM_020722	57482		NM_020722	ENSG00000109265	CRACD	CRAD|KIAA1211	capping protein inhibiting regulator of actin dynamics	protein-coding
135944	chr2	171954871	171955030	+	0	NA	intron (NR_027862, intron 3 of 9)	MLT1D|LTR|ERVL-MaLR	32489	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
72675	chr15	38544601	38544980	+	0	NA	intron (NM_001128602, intron 2 of 15)	L1MEf|LINE|L1	20024	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
177964	chr4	139022451	139023080	+	0	NA	intron (NM_012118, intron 1 of 2)	AluJr|SINE|Alu	6984	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
230488	chr9	128232001	128232600	+	0	NA	intron (NM_001288739, intron 10 of 21)	intron (NM_001288739, intron 10 of 21)	12530	NR_029619	406978		NR_029619	ENSG00000207581	MIR199B	MIRN199B|mir-199b	microRNA 199b	ncRNA
52184	chr12	54327171	54327680	+	0	NA	intron (NM_001271734, intron 1 of 7)	AluSx|SINE|Alu	2294	NM_016057	22818		NM_016057	ENSG00000111481	COPZ1	CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP	COPI coat complex subunit zeta 1	protein-coding
23072	chr1	226641721	226641980	+	0	NA	intron (NM_002221, intron 5 of 7)	intron (NM_002221, intron 5 of 7)	33218	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
48383	chr12	9564571	9564730	+	0	NA	intron (NR_153413, intron 38 of 45)	MLT1B|LTR|ERVL-MaLR	43266	NM_002258	3820		NM_002258	ENSG00000111796	KLRB1	CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A	killer cell lectin like receptor B1	protein-coding
72714	chr15	38665321	38666130	+	0	NA	Intergenic	Intergenic	-30873	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
193606	chr6	30730571	30731700	+	0	NA	intron (NM_001318875, intron 7 of 11).2	intron (NM_001318875, intron 7 of 11).2	9497	NM_001293215	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
80663	chr16	3015201	3015400	+	0	NA	TTS (NM_020982)	TTS (NM_020982)	2377	NM_020982	9080		NM_020982	ENSG00000213937	CLDN9	DFNB116	claudin 9	protein-coding
119668	chr19	40837621	40837930	+	0	NA	Intergenic	L1M5|LINE|L1	12672	NM_000762	1548		NM_000762	ENSG00000255974	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450 family 2 subfamily A member 6	protein-coding
223207	chr8	143586051	143586150	+	0	NA	intron (NM_001330646, intron 2 of 6)	intron (NM_001330646, intron 2 of 6)	-7770	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
159134	chr3	12646971	12647130	+	0	NA	intron (NM_001354691, intron 1 of 16)	AluY|SINE|Alu	16458	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
230615	chr9	128627401	128627800	+	0	NA	intron (NM_001375313, intron 50 of 55)	intron (NM_001375313, intron 50 of 55)	29250	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
39925	chr11	62529121	62529780	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	16214	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
205242	chr7	8035621	8036240	+	0	NA	intron (NM_138426, intron 3 of 7)	L1PB4|LINE|L1	67134	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
91860	chr17	7228471	7228630	+	0	NA	intron (NM_004422, intron 9 of 14)	L1ME3B|LINE|L1	-5171	NR_029896	442898		NR_029896	ENSG00000199053	MIR324	MIRN324|hsa-mir-324|mir-324	microRNA 324	ncRNA
10784	chr1	77482751	77483050	+	0	NA	intron (NM_174858, intron 8 of 13)	intron (NM_174858, intron 8 of 13)	199758	NM_001376155	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
185816	chr5	132445101	132446280	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	34761	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
107948	chr18	58139751	58139850	+	0	NA	intron (NM_001144964, intron 1 of 30)	intron (NM_001144964, intron 1 of 30)	-9520	NM_001144968	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
51743	chr12	53236121	53237100	+	0	NA	Intergenic	Intergenic	-4354	NM_001243730	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
7864	chr1	36380001	36380200	+	0	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	5824	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
112472	chr19	6400101	6400300	+	0	NA	intron (NM_001321601, intron 2 of 3)	intron (NM_001321601, intron 2 of 3)	6431	NM_001321601	390877		NM_001321601	ENSG00000293438	LOC390877	-	adenylate kinase isoenzyme 1-like	pseudo
215464	chr7	158147351	158147800	+	0	NA	intron (NM_130842, intron 5 of 21)	intron (NM_130842, intron 5 of 21)	292990	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
18055	chr1	160631151	160631550	+	0	NA	intron (NR_104401, intron 3 of 5)	intron (NR_104401, intron 3 of 5)	15694	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
221424	chr8	123767801	123769630	+	0	NA	exon (NM_144963, exon 1 of 24)	exon (NM_144963, exon 1 of 24)	276	NM_001317918	157769		NM_144963	ENSG00000176853	FAM91A1	-	family with sequence similarity 91 member A1	protein-coding
185531	chr5	131343121	131343730	+	0	NA	intron (NM_001375633, intron 2 of 5)	GA-rich|Low_complexity|Low_complexity	79372	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
95409	chr17	36070471	36071050	+	0	NA	intron (NM_002988, intron 2 of 2).3	intron (NM_002988, intron 2 of 2).3	6488	NM_002988	6362		NM_002988	ENSG00000275385	CCL18	AMAC-1|AMAC1|CKb7|DC-CK1|DCCK1|MIP-4|PARC|SCYA18	C-C motif chemokine ligand 18	protein-coding
91401	chr17	4641451	4641750	+	0	NA	promoter-TSS (NM_001140)	promoter-TSS (NM_001140)	78	NM_001140	246		NM_001140	ENSG00000161905	ALOX15	12-LOX|15-LOX|15-LOX-1|LOG15	arachidonate 15-lipoxygenase	protein-coding
172278	chr4	1545971	1546300	+	0	NA	Intergenic	Intergenic	137856	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
58940	chr13	19771221	19771780	+	0	NA	intron (NM_001354909, intron 2 of 8)	AluSz6|SINE|Alu	11445	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
91895	chr17	7289271	7289430	+	0	NA	intron (NM_015982, intron 7 of 8)	intron (NM_015982, intron 7 of 8)	5289	NM_015982	51087		NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y-box binding protein 2	protein-coding
89827	chr16	89576901	89577200	+	0	NA	intron (NM_153636, intron 1 of 14)	intron (NM_153636, intron 1 of 14)	1292	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
84136	chr16	29729151	29729450	+	0	NA	Intergenic	Intergenic	16690	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
26443	chr10	17409101	17409550	+	0	NA	intron (NR_144322, intron 2 of 6)	Tigger8|DNA|TcMar-Tigger	22389	NR_034129	100128098		NR_034129	ENSG00000204832	ST8SIA6-AS1	APAL	ST8SIA6 antisense RNA 1	ncRNA
27246	chr10	29646671	29647030	+	0	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	-11879	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
38113	chr11	35230221	35230480	+	0	NA	3' UTR (NM_000610, exon 18 of 18)	3' UTR (NM_000610, exon 18 of 18)	67400	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
5485	chr1	25677351	25677750	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	-18605	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
50292	chr12	46381121	46381380	+	0	NA	Intergenic	Intergenic	-2426	NR_125380	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
3168	chr1	12658701	12659300	+	0	NA	intron (NM_001013630, intron 2 of 3)	(TGAA)n|Simple_repeat|Simple_repeat	14915	NM_001013630	343066		NM_001013630	ENSG00000204518	AADACL4	-	arylacetamide deacetylase like 4	protein-coding
132098	chr2	101330371	101331150	+	0	NA	Intergenic	Intergenic	21310	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
123496	chr19	54200401	54201800	+	0	NA	intron (NM_001321702, intron 1 of 4).5	CpG	242	NR_135763	6203		NM_001013	ENSG00000170889	RPS9	S9|uS4	ribosomal protein S9	protein-coding
126325	chr2	27356051	27357950	+	0	NA	promoter-TSS (NM_001035521)	promoter-TSS (NM_001035521)	34	NM_001521	2976		NM_001521	ENSG00000115207	GTF3C2	TF3C-beta|TFIIIC-BETA|TFIIIC110	general transcription factor IIIC subunit 2	protein-coding
195324	chr6	36608021	36608450	+	0	NA	Intergenic	AluSp|SINE|Alu	13873	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
13157	chr1	111736951	111737250	+	0	NA	intron (NM_198926, intron 1 of 1)	intron (NM_198926, intron 1 of 1)	2295	NM_019099	55924		NM_019099	ENSG00000197852	INKA2	C1orf183|FAM212B	inka box actin regulator 2	protein-coding
123837	chr19	55228071	55228650	+	0	NA	exon (NM_001372013, exon 1 of 2)	exon (NM_001372013, exon 1 of 2)	403	NM_001372013	255043		NM_173804	ENSG00000180089	TMEM86B	-	transmembrane protein 86B	protein-coding
188944	chr5	160476171	160476530	+	0	NA	intron (NR_132748, intron 1 of 1)	intron (NR_132748, intron 1 of 1)	1948	NR_036095	100422938		NR_036095		MIR3142	-	microRNA 3142	ncRNA
24185	chr1	235900451	235900750	+	0	NA	Intergenic	L2c|LINE|L2	-16887	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
155959	chr22	39746651	39746950	+	0	NA	intron (NM_152512, intron 6 of 6)	HAL1|LINE|L1	146960	NM_152512	150350		NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
55036	chr12	96390871	96391450	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	9279	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
46307	chr11	124943721	124944050	+	0	NA	Intergenic	MIRc|SINE|MIR	-7838	NM_152722	220296		NM_152722	ENSG00000165478	HEPACAM	GlialCAM|HEPN1|MLC2A|MLC2B	hepatic and glial cell adhesion molecule	protein-coding
35061	chr11	601321	601580	+	0	NA	intron (NM_001286582, intron 9 of 17)	intron (NM_001286582, intron 9 of 17)	14500	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
31069	chr10	88999601	89000050	+	0	NA	intron (NR_135314, intron 1 of 8)	intron (NR_135314, intron 1 of 8)	-6850	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
112565	chr19	6595601	6595800	+	0	NA	Intergenic	L1ME4b|LINE|L1	-4550	NM_001252	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
7393	chr1	32917501	32917950	+	0	NA	Intergenic	Intergenic	-16336	NM_001329723	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
216397	chr8	17934851	17934950	+	0	NA	intron (NM_001352655, intron 3 of 26)	LTR85a|LTR|Gypsy?	11912	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
97242	chr17	42965651	42966050	+	0	NA	intron (NM_001136042, intron 6 of 16)	AluSx1|SINE|Alu	-1396	NM_001261434	80755		NM_001261434	ENSG00000266967	AARSD1	AlaXp	alanyl-tRNA synthetase domain containing 1	protein-coding
30536	chr10	79447401	79447750	+	0	NA	Intergenic	AluJb|SINE|Alu	-1951	NM_153367	219654		NM_153367	ENSG00000165424	ZCCHC24	C10orf56|Z3CXXC8	zinc finger CCHC-type containing 24	protein-coding
63425	chr13	114095451	114095750	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-17645	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
37341	chr11	14887801	14888000	+	0	NA	intron (NM_024514, intron 1 of 4)	L2a|LINE|L2	3771	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
155609	chr22	38840671	38840830	+	0	NA	intron (NM_014293, intron 1 of 4)	L2|LINE|L2	3278	NM_014293	23467		NM_014293	ENSG00000221890	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
237806	chrX	129934471	129934630	+	0	NA	Intergenic	Intergenic	28386	NM_006649	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
53630	chr12	68159201	68160550	+	0	NA	promoter-TSS (NM_000619)	promoter-TSS (NM_000619)	-135	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
65944	chr14	55579251	55582400	+	0	NA	promoter-TSS (NR_027123)	promoter-TSS (NR_027123)	618	NM_004986	3895		NM_004986	ENSG00000126777	KTN1	CG1|KNT|MU-RMS-40.19	kinectin 1	protein-coding
225746	chr9	37081471	37081830	+	0	NA	intron (NR_036592, intron 1 of 1)	AluSp|SINE|Alu	1754	NR_036592	100506710		NR_036592	ENSG00000281649	EBLN3P	EBLN3	endogenous Bornavirus like nucleoprotein 3, pseudogene	pseudo
207198	chr7	43634451	43634930	+	0	NA	intron (NR_163914, intron 7 of 8)	L1MDa|LINE|L1	51582	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
86575	chr16	67231321	67231830	+	0	NA	intron (NM_001318202, intron 17 of 23)	intron (NM_001318202, intron 17 of 23)	4445	NM_014187	29100		NM_014187	ENSG00000168701	TMEM208	HSPC171|SND2|hSND2	transmembrane protein 208	protein-coding
50561	chr12	48155321	48156000	+	0	NA	intron (NM_001319300, intron 1 of 4)	AluSz|SINE|Alu	1855	NM_024095	140461		NM_024095	ENSG00000177981	ASB8	PP14212	ankyrin repeat and SOCS box containing 8	protein-coding
63373	chr13	114051771	114051930	+	0	NA	intron (NM_001320822, intron 3 of 23).2	intron (NM_001320822, intron 3 of 23).2	26105	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
220657	chr8	101126021	101127650	+	0	NA	Intergenic	CpG	43404	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
239460	chrY	56721971	56722130	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-232205	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
165020	chr3	71395101	71395500	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-90529	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
198502	chr6	106448001	106448550	+	0	NA	intron (NM_001371242, intron 1 of 21)	intron (NM_001371242, intron 1 of 21)	8973	NR_134603	105377924		NR_134603	ENSG00000282408	LOC105377924	-	uncharacterized LOC105377924	ncRNA
68499	chr14	88163871	88164030	+	0	NA	Intergenic	L2a|LINE|L2	106961	NM_138318	54207		NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
177132	chr4	108111471	108111630	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	55247	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
190256	chr5	178859721	178861080	+	0	NA	intron (NM_058230, intron 1 of 4)	CpG	447	NM_058230	117608		NM_058230	ENSG00000178338	ZNF354B	KID2	zinc finger protein 354B	protein-coding
57217	chr12	121512351	121512830	+	0	NA	intron (NM_001005366, intron 10 of 22)	intron (NM_001005366, intron 10 of 22)	67656	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
142322	chr20	3670801	3671000	+	0	NA	intron (NM_025220, intron 19 of 21)	intron (NM_025220, intron 19 of 21)	-7501	NM_145762	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
9453	chr1	50418871	50419430	+	0	NA	exon (NM_032110, exon 3 of 3)	exon (NM_032110, exon 3 of 3)	4293	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
25844	chr10	11225571	11228400	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	61955	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
237587	chrX	123833351	123833680	+	0	NA	Intergenic	Intergenic	-26193	NR_165803	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
107589	chr18	48866501	48866700	+	0	NA	Intergenic	Intergenic	76207	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
110569	chr19	2145221	2145480	+	0	NA	intron (NM_001374799, intron 1 of 31)	intron (NM_001374799, intron 1 of 31)	6216	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
146007	chr20	46562401	46562880	+	0	NA	intron (NM_001193339, intron 11 of 11)	L2a|LINE|L2	-11986	NM_080721	128506		NM_080721	ENSG00000149635	OCSTAMP	C20orf123|OC-STAMP|dJ257E24.3	osteoclast stimulatory transmembrane protein	protein-coding
6379	chr1	27879621	27880080	+	0	NA	exon (NM_004848, exon 3 of 5)	exon (NM_004848, exon 3 of 5)	7306	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
220907	chr8	106661901	106662100	+	0	NA	intron (NM_181354, intron 1 of 13)	intron (NM_181354, intron 1 of 13)	4192	NM_181354	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
144542	chr20	35721951	35722650	+	0	NA	intron (NM_184234, intron 8 of 16)	AluY|SINE|Alu	19960	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
31603	chr10	97363501	97364630	+	0	NA	intron (NM_015179, intron 29 of 33)	intron (NM_015179, intron 29 of 33)	-29336	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
82547	chr16	18415671	18415830	+	0	NA	Intergenic	AluSq|SINE|Alu	-3773	NR_036143	100422886		NR_036143	ENSG00000257381	MIR3179-2	-	microRNA 3179-2	ncRNA
188022	chr5	149606151	149606650	+	0	NA	intron (NM_001001669, intron 3 of 12)	intron (NM_001001669, intron 3 of 12)	24902	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
207166	chr7	43598251	43599000	+	0	NA	intron (NM_004760, intron 2 of 6)	Ricksha_c|DNA|MULE-MuDR	15517	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
210186	chr7	98868171	98868750	+	0	NA	intron (NM_001134450, intron 1 of 7)	intron (NM_001134450, intron 1 of 7)	1554	NM_152913	222865		NM_152913	ENSG00000166448	TMEM130	-	transmembrane protein 130	protein-coding
32635	chr10	103690251	103690550	+	0	NA	intron (NM_014631, intron 6 of 13)	MLT2D|LTR|ERVL	-12185	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
159962	chr3	17515371	17515830	+	0	NA	intron (NM_001349091, intron 1 of 19)	intron (NM_001349091, intron 1 of 19)	184420	NM_001134381	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
107660	chr18	49021721	49022050	+	0	NA	Intergenic	Intergenic	-1818	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
134117	chr2	134124771	134124930	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-2275	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
110680	chr19	2270401	2272200	+	0	NA	intron (NM_001301020, intron 1 of 4)	CpG	1814	NM_004152	4946		NM_004152	ENSG00000104904	OAZ1	AZ1|AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
121449	chr19	47039871	47040030	+	0	NA	intron (NM_002517, intron 8 of 11)	intron (NM_002517, intron 8 of 11)	4633	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
6947	chr1	31752051	31752900	+	0	NA	intron (NM_001294336, intron 4 of 31)	intron (NM_001294336, intron 4 of 31)	6260	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
204119	chr7	2267571	2268050	+	0	NA	intron (NM_013321, intron 5 of 10)	SVA_F|Retroposon|SVA	-10233	NR_106895	102465503		NR_106895	ENSG00000284047	MIR6836	hsa-mir-6836	microRNA 6836	ncRNA
217209	chr8	26384801	26385000	+	0	NA	intron (NM_004331, intron 1 of 5)	AluSx1|SINE|Alu	1846	NM_004331	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
206401	chr7	31019521	31019780	+	0	NA	Intergenic	Intergenic	-32658	NM_001118	117		NM_001118	ENSG00000078549	ADCYAP1R1	PAC1|PAC1R|PACAPR|PACAPRI	ADCYAP receptor type I	protein-coding
145730	chr20	45058971	45059630	+	0	NA	intron (NM_001352385, intron 11 of 11)	MER44C|DNA|TcMar-Tigger	41827	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
17510	chr1	156745801	156746000	+	0	NA	intron (NM_001319186, intron 1 of 5)	MIR|SINE|MIR	-4812	NM_145729	79590		NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24|uL24m	mitochondrial ribosomal protein L24	protein-coding
46936	chr11	134359951	134360550	+	0	NA	intron (NM_001370460, intron 8 of 19)	intron (NM_001370460, intron 8 of 19)	28262	NM_001370463	89944		NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	galactosidase beta 1 like 2	protein-coding
83588	chr16	28163821	28164230	+	0	NA	intron (NM_001270940, intron 7 of 24)	intron (NM_001270940, intron 7 of 24)	47940	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
5151	chr1	24909601	24909800	+	0	NA	intron (NM_001031680, intron 4 of 5)	intron (NM_001031680, intron 4 of 5)	9716	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
83312	chr16	24544851	24545280	+	0	NA	intron (NM_032626, intron 1 of 2)	L2|LINE|L2	5478	NM_032626	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
147293	chr20	57622271	57623000	+	0	NA	Intergenic	Intergenic	-2209	NM_001160419	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
67028	chr14	67595471	67595830	+	0	NA	intron (NM_004569, intron 1 of 3)	MLT1L|LTR|ERVL-MaLR	4618	NM_004569	5283		NM_004569	ENSG00000100564	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis class H	protein-coding
112104	chr19	5580701	5581430	+	0	NA	Intergenic	AluSx|SINE|Alu	-13031	NR_027064								
122151	chr19	48871871	48873900	+	0	NA	intron (NM_014330, intron 1 of 2)	intron (NM_014330, intron 1 of 2)	493	NM_014330	23645		NM_014330	ENSG00000087074	PPP1R15A	GADD34	protein phosphatase 1 regulatory subunit 15A	protein-coding
108152	chr18	62583371	62583530	+	0	NA	intron (NR_126534, intron 14 of 14)	intron (NR_126534, intron 14 of 14)	60425	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
22327	chr1	214271501	214271700	+	0	NA	Intergenic	Intergenic	-9559	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
155731	chr22	39141301	39141500	+	0	NA	exon (NM_175709, exon 3 of 6)	exon (NM_175709, exon 3 of 6)	11280	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
101035	chr17	64791651	64791750	+	0	NA	intron (NR_024386, intron 8 of 10)	L2c|LINE|L2	-9701	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
132066	chr2	101256721	101257180	+	0	NA	intron (NM_017546, intron 1 of 6)	AluY|SINE|Alu	4064	NM_017546	55571		NM_017546	ENSG00000158435	CNOT11	C2orf29|C40	CCR4-NOT transcription complex subunit 11	protein-coding
15075	chr1	148461651	148461750	+	0	NA	Intergenic	L1PA3|LINE|L1	-1780	NR_027468	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
123468	chr19	54158951	54160730	+	0	NA	promoter-TSS (NM_024316).2	promoter-TSS (NM_024316).2	-119	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
156287	chr22	40465571	40465730	+	0	NA	intron (NM_001282661, intron 3 of 13)	AluJb|SINE|Alu	-2210	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
231490	chr9	131388101	131388500	+	0	NA	intron (NM_001384822, intron 1 of 30)	AluSq|SINE|Alu	-5786	NM_001384821	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
53479	chr12	66149971	66150130	+	0	NA	intron (NM_001282606, intron 4 of 7)	intron (NM_001282606, intron 4 of 7)	19299	NR_125724	103625681		NR_125724	ENSG00000239335	LLPH-DT	LLPH-AS1	LLPH divergent transcript	ncRNA
13064	chr1	111472221	111472730	+	0	NA	Intergenic	L2a|LINE|L2	-1509	NM_174896	128346		NM_174896	ENSG00000143110	C1orf162	-	chromosome 1 open reading frame 162	protein-coding
45545	chr11	118769671	118770100	+	0	NA	intron (NM_004397, intron 4 of 13)	AluY|SINE|Alu	21063	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
118213	chr19	35153151	35154200	+	0	NA	intron (NM_022006, intron 5 of 5)	intron (NM_022006, intron 5 of 5)	-1060	NM_001320912	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
158293	chr22	50368651	50368750	+	0	NA	intron (NM_001351641, intron 1 of 23)	AluJr|SINE|Alu	25373	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
190550	chr5	180791971	180792530	+	0	NA	exon (NM_001114620, exon 2 of 2)	exon (NM_001114620, exon 2 of 2)	10556	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
159101	chr3	12556251	12557780	+	0	NA	promoter-TSS (NM_001271707)	promoter-TSS (NM_001271707)	1	NM_001271707	23609		NM_014160	ENSG00000075975	MKRN2	HSPC070|RNF62	makorin ring finger protein 2	protein-coding
47869	chr12	6662601	6664000	+	0	NA	promoter-TSS (NM_001127582)	promoter-TSS (NM_001127582)	-181	NM_001127586	51147		NM_016162	ENSG00000111653	ING4	my036|p29ING4	inhibitor of growth family member 4	protein-coding
214707	chr7	150997951	150998650	+	0	NA	intron (NM_001160109, intron 4 of 13)	intron (NM_001160109, intron 4 of 13)	4496	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
232613	chr9	136438071	136439300	+	0	NA	exon (NM_019892, exon 1 of 10)	exon (NM_019892, exon 1 of 10)	1160	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
118982	chr19	38877051	38877150	+	0	NA	intron (NM_001195833, intron 1 of 11)	AluSz6|SINE|Alu	1175	NM_198445	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
59799	chr13	30369601	30369800	+	0	NA	intron (NR_024464, intron 2 of 4)	AluSx1|SINE|Alu	4214	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
83656	chr16	28320051	28320630	+	0	NA	exon (NM_001024401, exon 4 of 4)	exon (NM_001024401, exon 4 of 4)	27815	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
108805	chr18	78539801	78540230	+	0	NA	Intergenic	Intergenic	-440260	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
85050	chr16	31899221	31899680	+	0	NA	intron (NR_049749, intron 4 of 4)	L1P1|LINE|L1	25643	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
114135	chr19	11212451	11212550	+	0	NA	intron (NM_020812, intron 35 of 47)	AluSz|SINE|Alu	8872	NR_134909	105372273		NR_134909	ENSG00000267082	DOCK6-AS1	-	DOCK6 antisense RNA 1	ncRNA
2256	chr1	8910821	8911280	+	0	NA	Intergenic	Intergenic	32215	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
111283	chr19	3560621	3560880	+	0	NA	Intergenic	Intergenic	-3164	NM_174983	126321		NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501|SLC59B1	major facilitator superfamily domain containing 12	protein-coding
5877	chr1	26778871	26780030	+	0	NA	exon (NM_006015, exon 20 of 20)	exon (NM_006015, exon 20 of 20)	-7604	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
71673	chr15	19441071	19441430	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-841494	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
225773	chr9	37422251	37423600	+	0	NA	intron (NM_012203, intron 1 of 8)	intron (NM_012203, intron 1 of 8)	229	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
149100	chr21	16330401	16330600	+	0	NA	intron (NR_027790, intron 4 of 7)	intron (NR_027790, intron 4 of 7)	-45732	NR_145757	109617014		NR_145757	ENSG00000201025	SNORD74B	-	small nucleolar RNA, C/D box 74B	snoRNA
17973	chr1	160454451	160454780	+	0	NA	Intergenic	Intergenic	54051	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
111912	chr19	4691351	4691700	+	0	NA	intron (NR_158699, intron 13 of 22)	MER102c|DNA|hAT-Charlie	12243	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
151992	chr22	19174071	19174650	+	0	NA	Intergenic	Intergenic	2654	NR_103767	100652736		NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
231761	chr9	132233601	132233800	+	0	NA	intron (NM_032536, intron 5 of 7)	intron (NM_032536, intron 5 of 7)	71642	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
102684	chr17	76123701	76124430	+	0	NA	Intergenic	MIR3|SINE|MIR	-16491	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
10145	chr1	59971401	59971600	+	0	NA	Intergenic	Intergenic	-44702	NR_134981	1573		NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding
200956	chr6	139185021	139185680	+	0	NA	Intergenic	Charlie19a|DNA|hAT-Charlie	50270	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
232714	chr9	136580901	136581300	+	0	NA	Intergenic	Intergenic	33258	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
54150	chr12	76555101	76555750	+	0	NA	intron (NM_001319652, intron 1 of 25)	intron (NM_001319652, intron 1 of 25)	4346	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
218089	chr8	38943371	38945350	+	0	NA	intron (NM_021623, intron 4 of 11)	AluSq2|SINE|Alu	-29868	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
117833	chr19	31220551	31220850	+	0	NA	intron (NR_138036, intron 2 of 4)	MLT1J2|LTR|ERVL-MaLR	53190	NR_147209	107985312		NR_147209	ENSG00000267777	LINC01791	-	long intergenic non-protein coding RNA 1791	ncRNA
12809	chr1	109900101	109900300	+	0	NA	Intergenic	Intergenic	-10649	NM_172212	1435		NM_000757	ENSG00000184371	CSF1	CSF-1|MCSF|PG-M-CSF	colony stimulating factor 1	protein-coding
235923	chrX	53092601	53094930	+	0	NA	promoter-TSS (NR_145976)	promoter-TSS (NR_145976)	-392	NR_145978	102723508		NM_001397448	ENSG00000232593	KANTR	LINC01155|Spasm	KANTR integral membrane protein	protein-coding
215971	chr8	8780521	8780780	+	0	NA	Intergenic	Intergenic	78713	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
7044	chr1	31943601	31945730	+	0	NA	Intergenic	CpG	-6297	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
46139	chr11	123044851	123045650	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	12906	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
205518	chr7	18345701	18345930	+	0	NA	intron (NM_001321896, intron 1 of 12)	intron (NM_001321896, intron 1 of 12)	55723	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
200606	chr6	136751051	136752230	+	0	NA	intron (NM_005923, intron 1 of 29)	intron (NM_005923, intron 1 of 29)	-32407	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
189803	chr5	176871421	176872150	+	0	NA	intron (NM_133369, intron 6 of 14)	intron (NM_133369, intron 6 of 14)	27561	NM_002115	3101		NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3	protein-coding
9116	chr1	45334351	45334830	+	0	NA	intron (NR_146882, intron 1 of 16)	intron (NR_146882, intron 1 of 16)	5367	NM_001293195	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
145098	chr20	38728521	38728900	+	0	NA	3' UTR (NM_080552, exon 2 of 2)	3' UTR (NM_080552, exon 2 of 2)	4224	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
102783	chr17	76355101	76355500	+	0	NA	Intergenic	Intergenic	-1102	NM_001366236	5635		NM_002766	ENSG00000161542	PRPSAP1	PAP39	phosphoribosyl pyrophosphate synthetase associated protein 1	protein-coding
211019	chr7	102393751	102394530	+	0	NA	intron (NR_038967, intron 4 of 8)	LTR35|LTR|ERV1	-2223	NM_024653	79706		NM_024653	ENSG00000128563	PRKRIP1	C114|KRBOX3	PRKR interacting protein 1	protein-coding
122662	chr19	49866621	49868420	+	0	NA	promoter-TSS (NM_007254)	promoter-TSS (NM_007254)	56	NM_007254	11284		NM_007254	ENSG00000039650	PNKP	AOA4|CMT2B2|EIEE10|MCSZ|PNK	polynucleotide kinase 3'-phosphatase	protein-coding
123031	chr19	51136651	51137230	+	0	NA	TTS (NM_001198558)	TTS (NM_001198558)	-5361	NM_001277201	27036		NM_014385	ENSG00000168995	SIGLEC7	AIRM-1|AIRM1|CD328|CDw328|D-siglec|QA79|SIGLEC-7|SIGLEC19P|SIGLECP2|p75|p75/AIRM1	sialic acid binding Ig like lectin 7	protein-coding
100100	chr17	58321601	58322430	+	0	NA	intron (NM_001261835, intron 10 of 31)	L2b|LINE|L2	-3435	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
108661	chr18	76801721	76802400	+	0	NA	intron (NR_040024, intron 2 of 2)	intron (NR_040024, intron 2 of 2)	20235	NR_040024	100131655		NR_040024	ENSG00000264278	ZNF236-DT	-	ZNF236 divergent transcript	ncRNA
225674	chr9	36472171	36472400	+	0	NA	Intergenic	Intergenic	-71087	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
123304	chr19	53567971	53569180	+	0	NA	intron (NM_001317117, intron 3 of 5)	MER77B|LTR|ERVL	13268	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
138504	chr2	207164201	207164500	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	1598	NM_003709	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
113351	chr19	8663251	8663700	+	0	NA	intron (NM_001378601, intron 1 of 2)	intron (NM_001378601, intron 1 of 2)	7898	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
14637	chr1	145474251	145474550	+	0	NA	Intergenic	AluJb|SINE|Alu	-68622	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
24744	chr1	248676751	248676850	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	5504	NM_001004734	401994		NM_001004734	ENSG00000189181	OR14I1	OR5BU1|OR5BU1P	olfactory receptor family 14 subfamily I member 1	protein-coding
201503	chr6	149045451	149046180	+	0	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-13154	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
99632	chr17	50575951	50576130	+	0	NA	exon (NM_001256330, exon 8 of 35)	exon (NM_001256330, exon 8 of 35)	-13932	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
223752	chr8	144514401	144514600	+	0	NA	exon (NM_004260, exon 10 of 21)	exon (NM_004260, exon 10 of 21)	3333	NM_004260	9401		NM_004260	ENSG00000160957	RECQL4	RECQ4	RecQ like helicase 4	protein-coding
204360	chr7	2908251	2908350	+	0	NA	intron (NM_032415, intron 24 of 24)	L1MB3|LINE|L1	-63992	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
156800	chr22	41917721	41918530	+	0	NA	Intergenic	Intergenic	-3030	NM_001207020	440829		NM_001207020	ENSG00000234965	SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
84288	chr16	30079501	30079700	+	0	NA	intron (NM_001303507, intron 2 of 7)	intron (NM_001303507, intron 2 of 7)	3606	NM_001303507	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
127859	chr2	45650101	45652250	+	0	NA	promoter-TSS (NM_005400)	promoter-TSS (NM_005400)	-500	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
150272	chr21	41779051	41779580	+	0	NA	Intergenic	MER51A|LTR|ERV1	-12263	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
218383	chr8	43266111	43266250	+	0	NA	Intergenic	L1PA3|LINE|L1	-26262	NM_001002920	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
132730	chr2	109213501	109215100	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-72712	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
224232	chr9	5825371	5825530	+	0	NA	intron (NM_024896, intron 2 of 14)	L2a|LINE|L2	7667	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
113678	chr19	10396651	10396900	+	0	NA	intron (NM_007065, intron 1 of 7)	AluJb|SINE|Alu	6763	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
215308	chr7	157334951	157335430	+	0	NA	Intergenic	LTR48|LTR|ERV1	-1814	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
4833	chr1	23629971	23630130	+	0	NA	intron (NR_167910, intron 4 of 5)	L1ME4a|LINE|L1	2716	NR_167904	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
16550	chr1	154964171	154964330	+	0	NA	intron (NM_001130041, intron 12 of 12)	intron (NM_001130041, intron 12 of 12)	-2468	NM_138300	90780		NM_138300	ENSG00000163348	PYGO2	1190004M21Rik	pygopus family PHD finger 2	protein-coding
89685	chr16	89385371	89385530	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-45468	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
84939	chr16	31333601	31334100	+	0	NA	TTS (NM_001145808)	TTS (NM_001145808)	-21326	NM_001286375	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
145066	chr20	38474151	38474750	+	0	NA	intron (NM_020336, intron 1 of 29)	AluJb|SINE|Alu	1607	NM_001282918	57148		NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta	Ral GTPase activating protein non-catalytic subunit beta	protein-coding
146801	chr20	50955621	50955880	+	0	NA	intron (NM_003859, intron 1 of 8)	AluY|SINE|Alu	2782	NM_003859	8813		NM_003859	ENSG00000000419	DPM1	CDGIE|MPDS	dolichyl-phosphate mannosyltransferase subunit 1, catalytic	protein-coding
130860	chr2	87400301	87400800	+	0	NA	Intergenic	AluSc5|SINE|Alu	-54877	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
211313	chr7	103373871	103374430	+	0	NA	TTS (NR_120443)	TTS (NR_120443)	26507	NM_002803	5701		NM_002803	ENSG00000161057	PSMC2	MSS1|Nbla10058|RPT1|S7	proteasome 26S subunit, ATPase 2	protein-coding
146665	chr20	50483321	50484550	+	0	NA	Intergenic	MIRb|SINE|MIR	-26386	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
9323	chr1	46547551	46548650	+	0	NA	intron (NM_001097611, intron 2 of 2)	MIR|SINE|MIR	3115	NM_001097611	148930		NM_182516	ENSG00000162456	KNCN	Kino|L5	kinocilin	protein-coding
135322	chr2	160344721	160345450	+	0	NA	intron (NM_016836, intron 2 of 13)	MIR|SINE|MIR	62797	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
138165	chr2	202632051	202632150	+	0	NA	Intergenic	Intergenic	-2869	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
5575	chr1	25988021	25988280	+	0	NA	intron (NM_000437, intron 4 of 10)	intron (NM_000437, intron 4 of 10)	9913	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
29636	chr10	71836351	71836650	+	0	NA	intron (NM_002778, intron 1 of 13)	intron (NM_002778, intron 1 of 13)	14751	NM_002778	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
88070	chr16	81472151	81472250	+	0	NA	intron (NM_198390, intron 1 of 20)	MIR|SINE|MIR	-23154	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
193111	chr6	28943301	28943900	+	0	NA	promoter-TSS (NR_103538)	promoter-TSS (NR_103538)	-184	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
62051	chr13	91346701	91348000	+	0	NA	promoter-TSS (NR_027349)	promoter-TSS (NR_027349)	-470	NR_027349	407975		NM_213723	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA
60699	chr13	43905301	43905800	+	0	NA	Intergenic	Intergenic	25646	NM_001350647	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
90818	chr17	2268071	2268230	+	0	NA	intron (NM_017575, intron 8 of 18)	FLAM_C|SINE|Alu	-1965	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
81566	chr16	9130721	9130980	+	0	NA	Intergenic	AluSx3|SINE|Alu	39206	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
82162	chr16	14909651	14909950	+	0	NA	Intergenic	MIRc|SINE|MIR	-1420	NR_036141	100422870		NR_036141	ENSG00000265537	MIR3180-1	-	microRNA 3180-1	ncRNA
80039	chr16	1955471	1955700	+	0	NA	promoter-TSS (NM_005061)	promoter-TSS (NM_005061)	-896	NM_005061	6123		NM_005061	ENSG00000140986	RPL3L	CMD2D	ribosomal protein L3 like	protein-coding
11642	chr1	91771851	91772150	+	0	NA	intron (NR_036634, intron 4 of 17)	intron (NR_036634, intron 4 of 17)	114151	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
116788	chr19	18516051	18516780	+	0	NA	intron (NM_006532, intron 1 of 11)	L2a|LINE|L2	5655	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
42194	chr11	67994821	67995080	+	0	NA	intron (NM_030930, intron 9 of 10)	intron (NM_030930, intron 9 of 10)	9147	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
64174	chr14	22932901	22933100	+	0	NA	intron (NR_110002, intron 1 of 2)	intron (NR_110002, intron 1 of 2)	3391	NR_110002	101926933		NR_110002	ENSG00000257285	PRMT5-DT	-	PRMT5 divergent transcript	ncRNA
58393	chr12	131897671	131897980	+	0	NA	intron (NM_003565, intron 3 of 27)	AluJo|SINE|Alu	3203	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
56257	chr12	112003951	112004250	+	0	NA	intron (NM_001193453, intron 2 of 9)	AluJr4|SINE|Alu	9065	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
90111	chr16	90083301	90083730	+	0	NA	Intergenic	Intergenic	-6184	NM_001098173	11105		NM_052996	ENSG00000126856	PRDM7	PFM4|ZNF910	PR/SET domain 7	protein-coding
167532	chr3	129308721	129309450	+	0	NA	Intergenic	L1MB2|LINE|L1	-7186	NR_026991	339942		NM_001025468		H1-10-AS1	C3orf47|H1FX-AS1	H1-10 antisense RNA 1	ncRNA
77942	chr15	89334201	89336050	+	0	NA	promoter-TSS (NM_001126131)	promoter-TSS (NM_001126131)	-301	NM_002693	5428		NM_002693	ENSG00000140521	POLG	MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE	DNA polymerase gamma, catalytic subunit	protein-coding
132366	chr2	105760451	105761000	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	15662	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
101335	chr17	66791321	66791580	+	0	NA	intron (NM_002737, intron 16 of 16)	intron (NM_002737, intron 16 of 16)	4378	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
40282	chr11	63844701	63844900	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	5690	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
144218	chr20	34366751	34366850	+	0	NA	intron (NM_031483, intron 1 of 24)	intron (NM_031483, intron 1 of 24)	3527	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
21477	chr1	205630671	205631500	+	0	NA	intron (NM_021795, intron 1 of 2)	intron (NM_021795, intron 1 of 2)	926	NM_001973	2005		NM_001973	ENSG00000158711	ELK4	SAP1	ETS transcription factor ELK4	protein-coding
976	chr1	1812651	1812950	+	0	NA	intron (NM_001282538, intron 3 of 9)	intron (NM_001282538, intron 3 of 9)	-32769	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
112131	chr19	5605521	5605850	+	0	NA	intron (NM_014649, intron 9 of 20)	L1MEc|LINE|L1	17091	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
66116	chr14	60091201	60093180	+	0	NA	5' UTR (NM_001330177, exon 1 of 11)	5' UTR (NM_001330177, exon 1 of 11)	267	NM_001330177	64430		NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex 4	protein-coding
203256	chr6	169556101	169556300	+	0	NA	intron (NR_146875, intron 19 of 20)	MLT1E1A|LTR|ERVL-MaLR	145829	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
167905	chr3	136158921	136159630	+	0	NA	intron (NM_018133, intron 1 of 1)	L1MB7|LINE|L1	35193	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
160862	chr3	33364151	33364250	+	0	NA	intron (NR_146130, intron 5 of 15)	intron (NR_146130, intron 5 of 15)	76178	NM_001128160	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
204736	chr7	5565501	5565700	+	0	NA	Intergenic	AluSx3|SINE|Alu	-27216	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
155704	chr22	39094421	39095350	+	0	NA	Intergenic	AluSg|SINE|Alu	-2339	NM_001166004	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
180138	chr5	1332101	1332300	+	0	NA	intron (NM_030782, intron 7 of 16)	intron (NM_030782, intron 7 of 16)	12899	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
90450	chr17	1371871	1372230	+	0	NA	intron (NR_024058, intron 1 of 6)	AluSx3|SINE|Alu	28172	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
27859	chr10	40828131	40828250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1539855	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
5527	chr1	25804451	25804750	+	0	NA	intron (NM_020451, intron 3 of 12)	L3|LINE|CR1	4407	NM_020451	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
162732	chr3	49031901	49032750	+	0	NA	intron (NM_001320580, intron 9 of 10)	intron (NM_001320580, intron 9 of 10)	-2927	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
206434	chr7	32800321	32800780	+	0	NA	Intergenic	LTR13|LTR|ERVK	-25752	NR_132360	102724668		NR_132360		DPY19L1P2	THC1072510	DPY19L1 pseudogene 2	pseudo
56777	chr12	120182171	120183200	+	0	NA	intron (NM_006836, intron 5 of 57)	AluSx1|SINE|Alu	12030	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
73983	chr15	52008221	52008830	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	10570	NR_156732	112543478		NR_156732	ENSG00000259438	MAPK6-DT	lncMAPK6	MAPK6 divergent transcript	ncRNA
46906	chr11	134223301	134224300	+	0	NA	promoter-TSS (NM_052875)	promoter-TSS (NM_052875)	167	NM_001372065	23310		NM_015261	ENSG00000151503	NCAPD3	CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6	non-SMC condensin II complex subunit D3	protein-coding
4255	chr1	19640901	19641100	+	0	NA	intron (NM_001204088, intron 2 of 4)	intron (NM_001204088, intron 2 of 4)	-2229	NM_001278164	4681		NM_005380	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	NBL1, DAN family BMP antagonist	protein-coding
174762	chr4	47490471	47490880	+	0	NA	intron (NM_020453, intron 1 of 22)	intron (NM_020453, intron 1 of 22)	5400	NM_020453	57205		NM_020453	ENSG00000145246	ATP10D	ATPVD	ATPase phospholipid transporting 10D (putative)	protein-coding
33740	chr10	122404471	122404830	+	0	NA	intron (NR_165165, intron 5 of 12)	intron (NR_165165, intron 5 of 12)	-12315	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
167655	chr3	129690121	129690800	+	0	NA	intron (NM_001349271, intron 2 of 4)	intron (NM_001349271, intron 2 of 4)	-1728	NM_001349272	23023		NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
228427	chr9	99807151	99807930	+	0	NA	intron (NR_109802, intron 1 of 6)	intron (NR_109802, intron 1 of 6)	12349	NR_109802	101928438		NR_109802	ENSG00000237461	LOC101928438	-	uncharacterized LOC101928438	ncRNA
195942	chr6	41927071	41927430	+	0	NA	intron (NM_004053, intron 1 of 6)	intron (NM_004053, intron 1 of 6)	5751	NM_004053	705		NM_004053	ENSG00000112578	BYSL	BYSTIN|Enp1	bystin like	protein-coding
76464	chr15	74854171	74854330	+	0	NA	intron (NM_001320778, intron 2 of 9)	intron (NM_001320778, intron 2 of 9)	-11094	NM_001284364	25989		NM_001099436	ENSG00000140474	ULK3	-	unc-51 like kinase 3	protein-coding
124802	chr2	7497301	7497580	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	76179	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
170154	chr3	183533571	183533730	+	0	NA	intron (NM_130446, intron 1 of 6)	intron (NM_130446, intron 1 of 6)	-15085	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
137530	chr2	197208851	197209230	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	11049	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
158688	chr3	5194271	5195120	+	0	NA	intron (NM_014674, intron 1 of 11)	intron (NM_014674, intron 1 of 11)	6988	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
151485	chr21	46292821	46294050	+	0	NA	TTS (NM_001314026)	TTS (NM_001314026)	7093	NM_001314022	54059		NM_058181	ENSG00000182362	YBEY	C21orf57	ybeY metalloendoribonuclease	protein-coding
169758	chr3	172562521	172563580	+	0	NA	intron (NR_146714, intron 3 of 3)	intron (NR_146714, intron 3 of 3)	32557	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
188322	chr5	151217251	151217630	+	0	NA	intron (NR_160730, intron 2 of 3)	intron (NR_160730, intron 2 of 3)	5306	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
185165	chr5	119340251	119342800	+	0	NA	intron (NM_001286814, intron 1 of 1)	intron (NM_001286814, intron 1 of 1)	8350	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
32605	chr10	103590221	103590830	+	0	NA	3' UTR (NM_004210, exon 6 of 6)	3' UTR (NM_004210, exon 6 of 6)	-73083	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
172980	chr4	4116971	4117130	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	109879	NM_177998	133060		NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
155603	chr22	38793651	38794780	+	0	NA	promoter-TSS (NM_005740)	promoter-TSS (NM_005740)	-72	NM_005740	10126		NM_005740	ENSG00000100246	DNAL4	MRMV3|PIG27	dynein axonemal light chain 4	protein-coding
31633	chr10	97388851	97388950	+	0	NA	intron (NM_001284337, intron 3 of 30)	MIRb|SINE|MIR	12440	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
47520	chr12	4145921	4147580	+	0	NA	Intergenic	MIRb|SINE|MIR	-127012	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
62826	chr13	109769051	109769500	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	17308	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
210637	chr7	100465621	100466330	+	0	NA	TTS (NR_130119)	TTS (NR_130119)	-1715	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
146307	chr20	49183471	49183800	+	0	NA	intron (NM_001322929, intron 1 of 14)	intron (NM_001322929, intron 1 of 14)	4699	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
9450	chr1	50333651	50333830	+	0	NA	Intergenic	CpG	89703	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
151618	chr22	12600151	12600300	+	0	NA	Intergenic	Intergenic	702819	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
111698	chr19	4280151	4280580	+	0	NA	intron (NM_001372011, intron 2 of 6)	intron (NM_001372011, intron 2 of 6)	1099	NM_020209	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
142022	chr20	1658951	1659050	+	0	NA	Intergenic	MIRb|SINE|MIR	-1221	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
118495	chr19	35941871	35942030	+	0	NA	intron (NM_024509, intron 2 of 2)	AluYm1|SINE|Alu	-5165	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
158415	chr22	50535171	50535530	+	0	NA	Intergenic	AluJb|SINE|Alu	-2852	NM_001014440	440836		NM_001014440	ENSG00000177989	CIMAP1B	FAP123|ODF3B|ODF3L3	ciliary microtubule associated protein 1B	protein-coding
155953	chr22	39691021	39691680	+	0	NA	Intergenic	L2b|LINE|L2	120597	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
181947	chr5	55022401	55023050	+	0	NA	intron (NR_104662, intron 1 of 2)	intron (NR_104662, intron 1 of 2)	1444	NR_104662	102467081		NR_104662		LOC102467081	-	uncharacterized LOC102467081	ncRNA
93694	chr17	19380251	19380630	+	0	NA	intron (NM_002749, intron 3 of 6)	MIR3|SINE|MIR	1942	NM_139034	5598		NM_002749	ENSG00000166484	MAPK7	BMK1|ERK4|ERK5|PRKM7	mitogen-activated protein kinase 7	protein-coding
8192	chr1	39571751	39572150	+	0	NA	intron (NM_003819, intron 2 of 15)	intron (NM_003819, intron 2 of 15)	-4440	NR_002983	677834		NR_002983	ENSG00000201457	SNORA55	ACA55	small nucleolar RNA, H/ACA box 55	snoRNA
165320	chr3	87792721	87793280	+	0	NA	5' UTR (NM_001322208, exon 1 of 3)	intron (NM_001322209, intron 1 of 2)	294	NM_001322209	3355		NM_000866	ENSG00000179097	HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	5-hydroxytryptamine receptor 1F	protein-coding
99415	chr17	50083501	50083850	+	0	NA	intron (NM_002204, intron 23 of 25)	AluJb|SINE|Alu	-11062	NM_001199898	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
75863	chr15	69670671	69671030	+	0	NA	intron (NR_126437, intron 3 of 5)	intron (NR_126437, intron 3 of 5)	78650	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
22926	chr1	225928901	225929630	+	0	NA	Intergenic	AluJb|SINE|Alu	-4925	NM_001271681	29920		NM_013328	ENSG00000143811	PYCR2	HLD10|P5CR2	pyrroline-5-carboxylate reductase 2	protein-coding
53600	chr12	68039601	68039830	+	0	NA	Intergenic	Intergenic	50270	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
177471	chr4	113755851	113756150	+	0	NA	intron (NM_001321592, intron 2 of 2)	intron (NM_001321592, intron 2 of 2)	5738	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
129478	chr2	69591171	69591330	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	52488	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
204113	chr7	2247001	2247580	+	0	NA	intron (NM_002452, intron 2 of 3)	intron (NM_002452, intron 2 of 3)	-2021	NR_160264	4521		NM_002452	ENSG00000106268	NUDT1	MTH1	nudix hydrolase 1	protein-coding
30506	chr10	79321001	79321630	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-26154	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
223880	chr9	269571	269930	+	0	NA	intron (NM_203447, intron 1 of 47)	AluSz|SINE|Alu	-3296	NM_001190458	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
121443	chr19	47034651	47034750	+	0	NA	promoter-TSS (NM_001321086)	promoter-TSS (NM_001321086)	-617	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
216097	chr8	11048201	11048600	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	-13098	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
237514	chrX	120039251	120039500	+	0	NA	intron (NR_131238, intron 1 of 4)	MER76-int|LTR|ERVL	3139	NR_131238	101928969		NR_131238	ENSG00000258545	RHOXF1-AS1	-	RHOXF1 antisense RNA 1	ncRNA
142944	chr20	18792021	18792280	+	0	NA	intron (NR_026883, intron 2 of 3)	intron (NR_026883, intron 2 of 3)	1832	NR_026884	29075		NM_014162	ENSG00000179935	LINC00652	HSPC072	long intergenic non-protein coding RNA 652	ncRNA
36762	chr11	9387301	9387930	+	0	NA	intron (NM_006391, intron 1 of 24)	AluSp|SINE|Alu	2963	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
225120	chr9	33469301	33469500	+	0	NA	intron (NM_139235, intron 5 of 15)	intron (NM_139235, intron 5 of 15)	-1465	NR_106910	102465512		NR_106910	ENSG00000275651	MIR6851	hsa-mir-6851	microRNA 6851	ncRNA
111666	chr19	4251551	4251900	+	0	NA	intron (NM_018074, intron 3 of 7)	AluSx|SINE|Alu	4645	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
7390	chr1	32903301	32903650	+	0	NA	Intergenic	Intergenic	-2086	NM_001329723	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
37299	chr11	14738021	14738280	+	0	NA	intron (NM_001363569, intron 1 of 15)	L1PA3|LINE|L1	94346	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
113857	chr19	10646551	10646650	+	0	NA	Intergenic	Intergenic	7272	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
54411	chr12	90102921	90103260	+	0	NA	Intergenic	Intergenic	155397	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
125626	chr2	19353771	19354380	+	0	NA	intron (NM_145260, intron 1 of 2)	intron (NM_145260, intron 1 of 2)	4548	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
211160	chr7	102576951	102577250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4479	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
46337	chr11	125514281	125515250	+	0	NA	Intergenic	L1MB7|LINE|L1	-18455	NM_022549	9638		NM_005103	ENSG00000149557	FEZ1	UNC-76	fasciculation and elongation protein zeta 1	protein-coding
208235	chr7	65395571	65395730	+	0	NA	intron (NM_001287533, intron 4 of 4)	MSTB|LTR|ERVL-MaLR	21795	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
55006	chr12	96367421	96367680	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	32889	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
58023	chr12	124423771	124424680	+	0	NA	intron (NM_001077261, intron 13 of 47)	intron (NM_001077261, intron 13 of 47)	-86983	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
209925	chr7	92530371	92530530	+	0	NA	intron (NM_032120, intron 2 of 4)	AluSz|SINE|Alu	1655	NM_001363366	84060		NM_032120	ENSG00000127993	RBM48	C7orf64|HSPC304	RNA binding motif protein 48	protein-coding
134184	chr2	134304871	134305430	+	0	NA	intron (NM_001371457, intron 3 of 16)	intron (NM_001371457, intron 3 of 16)	51078	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
110563	chr19	2123571	2124150	+	0	NA	exon (NM_003938, exon 10 of 30)	exon (NM_003938, exon 10 of 30)	26945	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
107583	chr18	48844501	48844830	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	98142	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
19441	chr1	174743051	174743350	+	0	NA	intron (NM_001366447, intron 17 of 20)	LOR1b|LTR|ERV1	42205	NM_001366452	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
47671	chr12	6337101	6338700	+	0	NA	intron (NR_144351, intron 1 of 8)	intron (NR_144351, intron 1 of 8)	4176	NM_001346091	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
165577	chr3	101567671	101567830	+	0	NA	Intergenic	L2a|LINE|L2	5882	NM_017819	54931		NM_017819	ENSG00000174173	TRMT10C	COXPD30|HNYA|MRPP1|RG9MTD1	tRNA methyltransferase 10C, mitochondrial RNase P subunit	protein-coding
88463	chr16	85026501	85026700	+	0	NA	Intergenic	Intergenic	-1151	NM_001286566	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
153972	chr22	30369521	30369930	+	0	NA	non-coding (NR_046312, exon 2 of 2)	non-coding (NR_046312, exon 2 of 2)	8180	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
126025	chr2	25340801	25341400	+	0	NA	intron (NR_135490, intron 1 of 23)	CpG	825	NM_022552	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
147299	chr20	57659071	57659230	+	0	NA	intron (NM_020182, intron 2 of 3)	intron (NM_020182, intron 2 of 3)	31536	NM_001255976	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
195024	chr6	35471671	35471830	+	0	NA	TTS (NM_007104)	TTS (NM_007104)	1242	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
92893	chr17	16442351	16443250	+	0	NA	TTS (NR_045021)	TTS (NR_045021)	1574	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
132398	chr2	105788851	105789250	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	43987	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
92922	chr17	16588901	16589680	+	0	NA	Intergenic	CpG	-20078	NM_001346169	57336		NM_020653	ENSG00000141040	ZNF287	ZKSCAN13|ZSCAN45	zinc finger protein 287	protein-coding
263	chr1	922551	922850	+	0	NA	non-coding (NR_168405, exon 4 of 5)	non-coding (NR_168405, exon 4 of 5)	-1223	NM_001385640	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
78018	chr15	89868151	89868650	+	0	NA	intron (NR_023361, intron 5 of 6)	SVA_F|Retroposon|SVA	15630	NR_049807	100846993		NR_049807	ENSG00000264796	MIR5009	-	microRNA 5009	ncRNA
91431	chr17	4733121	4733480	+	0	NA	TTS (NM_022059)	TTS (NM_022059)	1872	NM_001001683	400569		NM_001001683	ENSG00000161920	MED11	HSPC296|NDDRSB	mediator complex subunit 11	protein-coding
95439	chr17	36131701	36131900	+	0	NA	Intergenic	LTR79|LTR|ERVL	27973	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
84106	chr16	29641721	29642230	+	0	NA	Intergenic	Intergenic	-20975	NM_001030288	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
139888	chr2	230686651	230686950	+	0	NA	Intergenic	L1MA9|LINE|L1	13729	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
217203	chr8	26342251	26342550	+	0	NA	intron (NM_002717, intron 3 of 9)	intron (NM_002717, intron 3 of 9)	40553	NR_144550	157489		NR_144550	ENSG00000293314	SDAD1P1	-	SDA1 domain containing 1 pseudogene 1	pseudo
13998	chr1	120664801	120666730	+	0	NA	promoter-TSS (NR_144517)	promoter-TSS (NR_144517)	-329	NR_144517	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
31354	chr10	93412751	93413680	+	0	NA	intron (NM_133337, intron 5 of 52)	intron (NM_133337, intron 5 of 52)	69119	NM_133337	26509		NM_013451	ENSG00000138119	MYOF	FER1L3|HAE7	myoferlin	protein-coding
52745	chr12	56639951	56640850	+	0	NA	intron (NM_001686, intron 7 of 9)	AluSg7|SINE|Alu	3354	NR_003046	692090		NR_003046		SNORD59B	U59B	small nucleolar RNA, C/D box 59B	snoRNA
94583	chr17	29704101	29704700	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	57032	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
5825	chr1	26691851	26692700	+	0	NA	non-coding (NR_135804, exon 1 of 1)	non-coding (NR_135804, exon 1 of 1)	1856	NR_135804	101928728		NR_135804	ENSG00000260063	LOC101928728	-	uncharacterized LOC101928728	ncRNA
69546	chr14	96509401	96509980	+	0	NA	intron (NM_001293628, intron 1 of 21)	Tigger3a|DNA|TcMar-Tigger	6825	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
28310	chr10	46264501	46265130	+	0	NA	intron (NR_103827, intron 1 of 4)	intron (NR_103827, intron 1 of 4)	4793	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
207815	chr7	50311851	50313580	+	0	NA	intron (NM_001291837, intron 1 of 6)	intron (NM_001291837, intron 1 of 6)	4015	NM_001291837	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
233470	chr9	137721951	137722100	+	0	NA	intron (NM_024757, intron 3 of 26)	L1MD2|LINE|L1	66381	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
116294	chr19	17754451	17755200	+	0	NA	intron (NR_169234, intron 3 of 28)	intron (NR_169234, intron 3 of 28)	616	NR_169258	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
67959	chr14	74841021	74842280	+	0	NA	Intergenic	Intergenic	34495	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
156214	chr22	40333551	40333750	+	0	NA	3' UTR (NM_001162501, exon 23 of 23)	3' UTR (NM_001162501, exon 23 of 23)	-12850	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
185504	chr5	131319201	131319500	+	0	NA	intron (NM_001375633, intron 2 of 5)	intron (NM_001375633, intron 2 of 5)	55297	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
106410	chr18	13482071	13482430	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	22303	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
122916	chr19	50641001	50641200	+	0	NA	Intergenic	AluJr|SINE|Alu	-1219	NM_001160329	84258		NM_032298	ENSG00000213023	SYT3	SytIII	synaptotagmin 3	protein-coding
100157	chr17	58587701	58588100	+	0	NA	exon (NM_031272, exon 16 of 32)	exon (NM_031272, exon 16 of 32)	-43572	NM_001368771	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
230159	chr9	127765121	127765380	+	0	NA	intron (NM_170600, intron 2 of 11)	L2a|LINE|L2	-2810	NM_001142531	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
30702	chr10	80535581	80536950	+	0	NA	promoter-TSS (NR_120661)	promoter-TSS (NR_120661)	-323	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
216373	chr8	17699451	17700000	+	0	NA	intron (NR_156437, intron 6 of 13)	intron (NR_156437, intron 6 of 13)	-1988	NM_020749	57509		NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1	microtubule associated scaffold protein 1	protein-coding
117443	chr19	19661151	19662500	+	0	NA	intron (NM_020410, intron 1 of 25)	intron (NM_020410, intron 1 of 25)	1851	NM_020410	57130		NM_020410	ENSG00000105726	ATP13A1	ATP13A|CGI-152	ATPase 13A1	protein-coding
72533	chr15	34318471	34319380	+	0	NA	promoter-TSS (NM_005135)	promoter-TSS (NM_005135)	-105	NM_005135	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
82908	chr16	21646801	21648050	+	0	NA	exon (NM_005849, exon 2 of 6).2	exon (NM_005849, exon 2 of 6).2	5183	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
236321	chrX	68831351	68831650	+	0	NA	intron (NM_004429, intron 1 of 4)	intron (NM_004429, intron 1 of 4)	2479	NM_004429	1947		NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
62447	chr13	99340901	99341400	+	0	NA	intron (NR_026644, intron 7 of 8)	intron (NR_026644, intron 7 of 8)	-10270	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
71505	chr14	106037921	106038600	+	0	NA	Intergenic	Intergenic	-65991	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
35333	chr11	1088351	1088650	+	0	NA	intron (NM_002457, intron 23 of 60)	intron (NM_002457, intron 23 of 60)	13625	NM_002457	4583		NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
8957	chr1	44405911	44406400	+	0	NA	promoter-TSS (NM_001376488)	promoter-TSS (NM_001376488)	-637	NM_001376488	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
128009	chr2	47057301	47057730	+	0	NA	intron (NM_020458, intron 18 of 19)	intron (NM_020458, intron 18 of 19)	97793	NM_001163561	285051		NM_173649	ENSG00000239605	STPG4	C2orf61|GSE	sperm-tail PG-rich repeat containing 4	protein-coding
213384	chr7	135971271	135971430	+	0	NA	intron (NM_001128619, intron 1 of 3)	intron (NM_001128619, intron 1 of 3)	6009	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
77440	chr15	84229171	84229330	+	0	NA	intron (NR_158192, intron 1 of 6)	intron (NR_158192, intron 1 of 6)	886	NR_158192	102724135		NR_158192		LOC102724135	-	uncharacterized LOC102724135	pseudo
56531	chr12	116736771	116737230	+	0	NA	intron (NM_024738, intron 1 of 4)	intron (NM_024738, intron 1 of 4)	1069	NM_001353625	79794		NM_024738	ENSG00000111412	SPRING1	C12orf49|LUR1|POST1|SPRING	SREBF pathway regulator in golgi 1	protein-coding
158326	chr22	50439771	50440480	+	0	NA	intron (NM_001351641, intron 21 of 23)	intron (NM_001351641, intron 21 of 23)	32683	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
88599	chr16	85591001	85591200	+	0	NA	Intergenic	Intergenic	-20309	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
26392	chr10	16951021	16951480	+	0	NA	intron (NM_001081, intron 33 of 66)	intron (NM_001081, intron 33 of 66)	-133796	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
127666	chr2	43172871	43173450	+	0	NA	Intergenic	AluY|SINE|Alu	53446	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
25100	chr10	3901471	3901700	+	0	NA	Intergenic	AluJb|SINE|Alu	67635	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
69308	chr14	93158171	93158630	+	0	NA	Intergenic	AluSg7|SINE|Alu	26497	NM_022151	64112		NM_022151	ENSG00000165943	MOAP1	MAP-1|PNMA4	modulator of apoptosis 1	protein-coding
36566	chr11	6649351	6649850	+	0	NA	intron (NM_003737, intron 1 of 20)	L2a|LINE|L2	6209	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
227160	chr9	86355901	86356500	+	0	NA	Intergenic	Intergenic	-1790	NM_001330718	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
25468	chr10	6669301	6669530	+	0	NA	Intergenic	Intergenic	34345	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
124619	chr2	1167021	1167650	+	0	NA	intron (NM_018968, intron 7 of 16)	CpG	-215943	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
24783	chr1	248875251	248876600	+	0	NA	Intergenic	Intergenic	-16840	NM_001350072	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
124787	chr2	7438921	7439380	+	0	NA	intron (NR_038432, intron 4 of 5)	intron (NR_038432, intron 4 of 5)	17889	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
57568	chr12	122239551	122239850	+	0	NA	intron (NM_001351018, intron 9 of 12)	AluY|SINE|Alu	-12244	NM_019887	56616		NM_019887	ENSG00000184047	DIABLO	DFNA64|SMAC	diablo IAP-binding mitochondrial protein	protein-coding
149157	chr21	17803701	17804700	+	0	NA	intron (NM_017447, intron 2 of 4)	intron (NM_017447, intron 2 of 4)	-11691	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
90617	chr17	1640201	1640980	+	0	NA	exon (NM_003693, exon 5 of 11).2	exon (NM_003693, exon 5 of 11).2	5142	NM_145350	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
38674	chr11	46396021	46396330	+	0	NA	TTS (NM_001300731)	TTS (NM_001300731)	-4399	NM_000741	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
228902	chr9	112867521	112867850	+	0	NA	intron (NM_001012994, intron 8 of 8)	intron (NM_001012994, intron 8 of 8)	23191	NM_033051	57864		NM_033051	ENSG00000119457	SLC46A2	Ly110|TSCOT	solute carrier family 46 member 2	protein-coding
202901	chr6	160007201	160007400	+	0	NA	non-coding (NR_047511, exon 1 of 3)	non-coding (NR_047511, exon 1 of 3)	364	NR_047511	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
30348	chr10	77719601	77719830	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	-81907	NM_001322836	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
173056	chr4	5998451	5998700	+	0	NA	intron (NM_001364690, intron 2 of 10)	intron (NM_001364690, intron 2 of 10)	19971	NM_001364689	389197		NM_207405	ENSG00000181215	C4orf50	-	chromosome 4 open reading frame 50	protein-coding
24128	chr1	235816271	235816430	+	0	NA	intron (NM_001301365, intron 3 of 52)	AluSc8|SINE|Alu	36710	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
225218	chr9	34177371	34177530	+	0	NA	Intergenic	AluJb|SINE|Alu	-1555	NM_001171201	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
180027	chr5	1049501	1049700	+	0	NA	TTS (NM_006598).2	TTS (NM_006598).2	13374	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
182245	chr5	57175601	57175900	+	0	NA	5' UTR (NM_022913, exon 2 of 12)	5' UTR (NM_022913, exon 2 of 12)	302	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
197064	chr6	53679371	53679830	+	0	NA	Intergenic	Intergenic	-13844	NM_001003760	401265		NM_001003760	ENSG00000124743	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch like family member 31	protein-coding
38715	chr11	46676721	46678030	+	0	NA	3' UTR (NM_004308, exon 13 of 13)	3' UTR (NM_004308, exon 13 of 13)	23244	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
213230	chr7	133483951	133485050	+	0	NA	TTS (NM_001037126)	TTS (NM_001037126)	193619	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
174598	chr4	40260101	40260500	+	0	NA	Intergenic	AluY|SINE|Alu	-46885	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
96396	chr17	40136951	40137500	+	0	NA	TTS (NM_001012241)	TTS (NM_001012241)	-3312	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
190507	chr5	180491671	180491830	+	0	NA	Intergenic	Intergenic	-2629	NM_001370472	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
69742	chr14	98931771	98933130	+	0	NA	Intergenic	Intergenic	220837	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
202651	chr6	158772821	158773380	+	0	NA	intron (NM_003379, intron 7 of 12)	intron (NM_003379, intron 7 of 12)	-8347	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
228652	chr9	107246301	107246680	+	0	NA	Intergenic	Intergenic	-36789	NM_002874	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
57739	chr12	122900071	122900680	+	0	NA	Intergenic	Intergenic	-4251	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
221203	chr8	120781051	120781350	+	0	NA	intron (NM_021021, intron 1 of 6)	HAL1ME|LINE|L1	19947	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
118778	chr19	38390101	38391080	+	0	NA	intron (NM_001042522, intron 1 of 4)	intron (NM_001042522, intron 1 of 4)	298	NR_073032	399473		NM_001039616	ENSG00000188766	SPRED3	Eve-3|spred-3	sprouty related EVH1 domain containing 3	protein-coding
24821	chr10	317251	317550	+	0	NA	intron (NM_014974, intron 31 of 36)	intron (NM_014974, intron 31 of 36)	137406	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
51145	chr12	50123451	50123750	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	11364	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
214750	chr7	151059201	151061580	+	0	NA	intron (NM_003040, intron 1 of 22)	intron (NM_003040, intron 1 of 22)	801	NM_003040	6522		NM_003040	ENSG00000164889	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3|OPTB9	solute carrier family 4 member 2	protein-coding
63488	chr13	114176501	114176700	+	0	NA	Intergenic	Intergenic	-43977	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
23345	chr1	228139451	228142060	+	0	NA	intron (NM_001242840, intron 1 of 6)	CpG	476	NM_001242840	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
103761	chr17	78974201	78974400	+	0	NA	intron (NM_005567, intron 4 of 5)	intron (NM_005567, intron 4 of 5)	5623	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
116972	chr19	18871771	18872650	+	0	NA	intron (NM_021267, intron 6 of 7)	intron (NM_021267, intron 6 of 7)	23948	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
40966	chr11	65358701	65358900	+	0	NA	Intergenic	AluSq|SINE|Alu	4049	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
202378	chr6	157820321	157820580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2796	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
7829	chr1	36309101	36309300	+	0	NA	intron (NM_024676, intron 6 of 12)	AluSz6|SINE|Alu	2093	NM_024676	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
147277	chr20	57498501	57499100	+	0	NA	TTS (NM_001269054)	TTS (NM_001269054)	26067	NM_001269052	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
107055	chr18	32289651	32289750	+	0	NA	intron (NM_022751, intron 3 of 5)	MER20|DNA|hAT-Charlie	99661	NM_005925	4225		NM_005925	ENSG00000141434	MEP1B	-	meprin A subunit beta	protein-coding
190886	chr6	2738401	2738680	+	0	NA	intron (NM_001347872, intron 2 of 12)	intron (NM_001347872, intron 2 of 12)	12382	NM_001012418	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
129795	chr2	71334501	71335130	+	0	NA	intron (NM_014497, intron 1 of 27)	AluY|SINE|Alu	3033	NM_014497	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
204532	chr7	4808921	4809550	+	0	NA	intron (NM_018059, intron 9 of 14)	CpG	-20596	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
38927	chr11	47454221	47455280	+	0	NA	Intergenic	AluSx|SINE|Alu	-5614	NM_032645	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
70404	chr14	101972571	101972730	+	0	NA	intron (NM_001376, intron 1 of 77)	intron (NM_001376, intron 1 of 77)	8077	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
180249	chr5	1644301	1645250	+	0	NA	Intergenic	Intergenic	-10770	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
96851	chr17	42006851	42007350	+	0	NA	intron (NM_003315, intron 1 of 13)	AluYf1|SINE|Alu	10065	NM_001144766	7266		NM_003315	ENSG00000168259	DNAJC7	DJ11|DJC7|TPR2|TTC2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding
64921	chr14	35438751	35439080	+	0	NA	Intergenic	Intergenic	-34166	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
27696	chr10	33138971	33140050	+	0	NA	Intergenic	Intergenic	-22703	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
162536	chr3	48624271	48624430	+	0	NA	Intergenic	L2a|LINE|L2	-2581	NM_001008269	440955		NM_001008269	ENSG00000183396	TMEM89	-	transmembrane protein 89	protein-coding
35654	chr11	1858071	1858500	+	0	NA	intron (NM_002339, intron 1 of 10)	intron (NM_002339, intron 1 of 10)	1251	NR_036185	100423021		NR_036185	ENSG00000264493	MIR4298	-	microRNA 4298	ncRNA
177519	chr4	118424201	118424550	+	0	NA	Intergenic	LTR33|LTR|ERVL	-71372	NM_003619	8492		NM_003619	ENSG00000164099	PRSS12	BSSP-3|BSSP3|MRT1	serine protease 12	protein-coding
50642	chr12	48719501	48719700	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-2893	NM_001277842	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
99176	chr17	49419521	49419780	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-4745	NM_001281715	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
95087	chr17	34146471	34146730	+	0	NA	intron (NM_001094, intron 1 of 9)	LTR16A1|LTR|ERVL	10206	NM_001094	40		NM_001094	ENSG00000108684	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid sensing ion channel subunit 2	protein-coding
183976	chr5	88693101	88693500	+	0	NA	intron (NR_146284, intron 1 of 3)	intron (NR_146284, intron 1 of 3)	-2259	NR_152232	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
174566	chr4	40224501	40225030	+	0	NA	intron (NM_001278360, intron 2 of 3)	MER97c|DNA|hAT-Tip100	27734	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
162811	chr3	49125321	49125650	+	0	NA	intron (NM_002292, intron 18 of 31)	intron (NM_002292, intron 18 of 31)	-4547	NM_001351105	10869		NM_006677	ENSG00000172046	USP19	ZMYND9	ubiquitin specific peptidase 19	protein-coding
96158	chr17	39684651	39685150	+	0	NA	intron (NM_033419, intron 2 of 7)	intron (NM_033419, intron 2 of 7)	3157	NM_033419	93210		NM_033419	ENSG00000161395	PGAP3	AGLA546|CAB2|PERLD1|PP1498|hCOS16	post-GPI attachment to proteins phospholipase 3	protein-coding
79279	chr16	532301	532580	+	0	NA	intron (NM_005632, intron 1 of 13)	AluSz6|SINE|Alu	-2876	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	ncRNA
103490	chr17	78377151	78377600	+	0	NA	Intergenic	Intergenic	-1274	NR_110602	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
2470	chr1	9658251	9660130	+	0	NA	intron (NM_005026, intron 1 of 23)	L1PA10|LINE|L1	-4604	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
153294	chr22	24171621	24171880	+	0	NA	exon (NM_001199281, exon 34 of 37)	exon (NM_001199281, exon 34 of 37)	-9737	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
184823	chr5	111276021	111276280	+	0	NA	intron (NM_001744, intron 1 of 10)	L1MEd|LINE|L1	51766	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
113214	chr19	8459301	8459700	+	0	NA	intron (NM_001297418, intron 3 of 13)	intron (NM_001297418, intron 3 of 13)	14525	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
226708	chr9	75127571	75127930	+	0	NA	intron (NM_012383, intron 3 of 9)	L1MC5|LINE|L1	39236	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
44066	chr11	95434671	95434850	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-202285	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
83525	chr16	27463221	27464750	+	0	NA	intron (NM_001286242, intron 34 of 36)	intron (NM_001286242, intron 34 of 36)	-10592	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
133503	chr2	119969501	119969700	+	0	NA	intron (NM_002830, intron 26 of 26)	AluY|SINE|Alu	-43477	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
128303	chr2	54633001	54633850	+	0	NA	intron (NM_178313, intron 16 of 30)	(GTGT)n|Simple_repeat|Simple_repeat	75031	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
18208	chr1	160981671	160982600	+	0	NA	Intergenic	Intergenic	-27326	NM_080878	142683		NM_080878	ENSG00000158764	ITLN2	HL-2|HL2	intelectin 2	protein-coding
232155	chr9	134067021	134069650	+	0	NA	promoter-TSS (NM_007371)	promoter-TSS (NM_007371)	-309	NM_007371	8019		NM_007371	ENSG00000169925	BRD3	FSHRG2|ORFX|RING3L	bromodomain containing 3	protein-coding
66323	chr14	61421371	61421530	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	100007	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
125388	chr2	11346871	11347130	+	0	NA	Intergenic	L1ME3G|LINE|L1	-1563	NM_001321643	9475		NM_004850	ENSG00000134318	ROCK2	ROCK-II	Rho associated coiled-coil containing protein kinase 2	protein-coding
14131	chr1	120994801	120995300	+	0	NA	intron (NR_135813, intron 2 of 2)	MER66C|LTR|ERV1	31402	NR_160532	105369199		NR_160532		LOC105369199	-	NBPF member 6 pseudogene	pseudo
161864	chr3	45869801	45870800	+	0	NA	intron (NM_001276379, intron 2 of 9)	intron (NM_001276379, intron 2 of 9)	-16204	NM_001256369	10803		NM_006641	ENSG00000173585	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	C-C motif chemokine receptor 9	protein-coding
219727	chr8	81034721	81035580	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	76918	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
154121	chr22	31148921	31149280	+	0	NA	Intergenic	Intergenic	-8592	NM_015715	50487		NM_015715	ENSG00000100078	PLA2G3	GIII-SPLA2|SPLA2III|sPLA2-III	phospholipase A2 group III	protein-coding
187125	chr5	140419651	140420150	+	0	NA	intron (NM_020690, intron 1 of 35)	L1MB7|LINE|L1	18067	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
216079	chr8	10825221	10825680	+	0	NA	promoter-TSS (NR_031711)	promoter-TSS (NR_031711)	-7	NR_031711	100302166		NR_031711	ENSG00000283210	MIR1322	MIRN1322|hsa-mir-1322	microRNA 1322	ncRNA
66475	chr14	61569671	61570550	+	0	NA	promoter-TSS (NR_110417)	promoter-TSS (NR_110417)	84	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
213017	chr7	131019221	131019950	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	87445	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
60021	chr13	32537821	32539550	+	0	NA	5' UTR (NM_014887, exon 1 of 6)	5' UTR (NM_014887, exon 1 of 6)	110	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
29172	chr10	68896521	68896780	+	0	NA	Intergenic	AluSc5|SINE|Alu	-4665	NM_024045	79009		NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
167360	chr3	128774351	128774450	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	48217	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
156857	chr22	42067651	42067750	+	0	NA	intron (NM_001362850, intron 4 of 9)	intron (NM_001362850, intron 4 of 9)	3112	NM_000262	4668		NM_000262	ENSG00000198951	NAGA	D22S674|GALB	alpha-N-acetylgalactosaminidase	protein-coding
14838	chr1	146365901	146366100	+	0	NA	Intergenic	AluY|SINE|Alu	-10807	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
97692	chr17	44312321	44312730	+	0	NA	intron (NM_001144825, intron 1 of 10)	intron (NM_001144825, intron 1 of 10)	3924	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
178035	chr4	139556001	139557930	+	0	NA	promoter-TSS (NM_001306199)	promoter-TSS (NM_001306199)	-196	NM_001306199	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
165599	chr3	101667121	101667580	+	0	NA	intron (NM_014415, intron 3 of 10)	L1MC5a|LINE|L1	-9080	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
144120	chr20	33996921	33997400	+	0	NA	intron (NM_016732, intron 1 of 9)	AluSx|SINE|Alu	-2793	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
47379	chr12	2690251	2690350	+	0	NA	intron (NR_045725, intron 2 of 3)	intron (NR_045725, intron 2 of 3)	857	NR_045725	100652846		NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	ncRNA
127698	chr2	43218561	43219200	+	0	NA	Intergenic	Intergenic	7726	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
67085	chr14	68214551	68214880	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	391123	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
171152	chr3	195616801	195617000	+	0	NA	Intergenic	Intergenic	-32960	NM_001647	347		NM_001647	ENSG00000189058	APOD	-	apolipoprotein D	protein-coding
205740	chr7	23499021	23499800	+	0	NA	Intergenic	AluSc8|SINE|Alu	9022	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
45810	chr11	119347071	119347230	+	0	NA	promoter-TSS (NM_015645)	promoter-TSS (NM_015645)	-445	NM_015645	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
179691	chr4	190090801	190091330	+	0	NA	Intergenic	CpG	25836	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
172687	chr4	2753421	2754050	+	0	NA	intron (NM_001292016, intron 1 of 4)	intron (NM_001292016, intron 1 of 4)	2601	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
238356	chrX	149825401	149825640	+	0	NA	promoter-TSS (NR_109813)	promoter-TSS (NR_109813)	-188	NR_109813	101241891		NR_109813	ENSG00000280752	LINC00850	KUCG1	long intergenic non-protein coding RNA 850	ncRNA
223556	chr8	144256151	144256850	+	0	NA	intron (NM_032450, intron 35 of 43)	intron (NM_032450, intron 35 of 43)	6237	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
86354	chr16	66521751	66522680	+	0	NA	intron (NR_073520, intron 5 of 8)	intron (NR_073520, intron 5 of 8)	27907	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
146350	chr20	49250121	49250630	+	0	NA	intron (NM_021035, intron 13 of 13)	MIRb|SINE|MIR	27682	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
199890	chr6	127842771	127842930	+	0	NA	intron (NM_001318531, intron 2 of 6).2	LTR40a|LTR|ERVL	12338	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
47177	chr12	789501	790730	+	0	NA	intron (NM_018979, intron 1 of 27)	MLT1L|LTR|ERVL-MaLR	37192	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
236545	chrX	72178101	72178300	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3476	NM_001170747	5303		NM_006223	ENSG00000102309	PIN4	EPVH|PAR14|PAR17|hEPVH|hPar14|hPar17	peptidylprolyl cis/trans isomerase, NIMA-interacting 4	protein-coding
92420	chr17	8387901	8388950	+	0	NA	Intergenic	Intergenic	-5232	NM_000987	6154		NM_000987	ENSG00000161970	RPL26	DBA11|L26|uL24	ribosomal protein L26	protein-coding
74165	chr15	55288821	55290200	+	0	NA	intron (NM_183235, intron 1 of 6)	intron (NM_183235, intron 1 of 6)	303	NM_183235	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
1512	chr1	2849271	2849430	+	0	NA	Intergenic	Intergenic	-48482	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
111859	chr19	4606901	4607300	+	0	NA	Intergenic	Intergenic	-32416	NM_152362	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
4052	chr1	19043421	19043680	+	0	NA	Intergenic	Intergenic	-86874	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
150129	chr21	37563271	37565230	+	0	NA	Intergenic	Intergenic	143951	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
28049	chr10	43259601	43260650	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	6940	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
192380	chr6	24715551	24716230	+	0	NA	intron (NM_030939, intron 2 of 4)	intron (NM_030939, intron 2 of 4)	3264	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
144674	chr20	36344651	36344830	+	0	NA	intron (NM_001365621, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	38401	NM_001365621	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
181640	chr5	49658151	49659190	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	782618	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
197408	chr6	73518201	73518840	+	0	NA	promoter-TSS (NR_132980).2	promoter-TSS (NR_132980).2	-82	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
227313	chr9	89428921	89429750	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	50555	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
96026	chr17	39248851	39249300	+	0	NA	Intergenic	Intergenic	11305	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
210930	chr7	101238451	101238550	+	0	NA	promoter-TSS (NM_014343)	promoter-TSS (NM_014343)	320	NM_001185080	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
224098	chr9	4533901	4534100	+	0	NA	intron (NM_004170, intron 1 of 11)	L1PA4|LINE|L1	43532	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
147026	chr20	53597701	53597900	+	0	NA	Intergenic	Intergenic	-3961	NM_006526	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
45458	chr11	118527021	118527280	+	0	NA	promoter-TSS (NM_001080441)	promoter-TSS (NM_001080441)	-324	NM_001346097	143941		NM_001080441	ENSG00000172425	TTC36	HBP21	tetratricopeptide repeat domain 36	protein-coding
156351	chr22	40858221	40858850	+	0	NA	intron (NM_022098, intron 1 of 9)	AluSg4|SINE|Alu	1387	NM_022098	63929		NM_022098	ENSG00000196236	XPNPEP3	APP3|ICP55|NPHPL1	X-prolyl aminopeptidase 3	protein-coding
78634	chr15	94249371	94249530	+	0	NA	intron (NR_169532, intron 1 of 23)	MER117|DNA|hAT-Charlie	17889	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
74190	chr15	55741601	55741980	+	0	NA	intron (NM_173814, intron 1 of 19)	intron (NM_173814, intron 1 of 19)	1362	NM_173814	283659		NM_173814	ENSG00000166450	PRTG	IGDCC5	protogenin	protein-coding
183588	chr5	80185971	80186130	+	0	NA	intron (NM_001174072, intron 2 of 11)	intron (NM_001174072, intron 2 of 11)	69998	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
204655	chr7	5428051	5428930	+	0	NA	5' UTR (NM_001354886, exon 1 of 1)	5' UTR (NM_001354886, exon 1 of 1)	437	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
88825	chr16	87436571	87437030	+	0	NA	intron (NM_015144, intron 2 of 12)	intron (NM_015144, intron 2 of 12)	44464	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
151274	chr21	45442871	45443230	+	0	NA	intron (NM_001379500, intron 2 of 41)	intron (NM_001379500, intron 2 of 41)	-12472	NM_030582	80781		NM_030582	ENSG00000182871	COL18A1	GLCC|KNO|KNO1|KS	collagen type XVIII alpha 1 chain	protein-coding
101470	chr17	67472301	67473350	+	0	NA	intron (NM_181671, intron 1 of 9)	L1MD3|LINE|L1	-1240	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
6593	chr1	28765521	28765780	+	0	NA	intron (NM_016258, intron 4 of 4)	AluJr4|SINE|Alu	28710	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
81762	chr16	11499251	11499930	+	0	NA	intron (NM_001370704, intron 10 of 66)	intron (NM_001370704, intron 10 of 66)	27657	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
181996	chr5	55229151	55229450	+	0	NA	Intergenic	Intergenic	-1985	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
175342	chr4	68439151	68440280	+	0	NA	Intergenic	Intergenic	-7748	NM_014058	28983		NM_014058	ENSG00000087128	TMPRSS11E	DESC1|TMPRSS11E2	transmembrane serine protease 11E	protein-coding
137362	chr2	196162351	196164050	+	0	NA	intron (NM_004226, intron 2 of 7)	intron (NM_004226, intron 2 of 7)	8378	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
143486	chr20	31069221	31070350	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-187879	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
26022	chr10	12342751	12342850	+	0	NA	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-6747	NM_020397	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
41794	chr11	66861121	66861400	+	0	NA	TTS (NM_024036)	TTS (NM_024036)	4196	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
214882	chr7	151406121	151406800	+	0	NA	intron (NM_001284261, intron 1 of 4)	intron (NM_001284261, intron 1 of 4)	-2701	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
162317	chr3	47426421	47426680	+	0	NA	intron (NM_001320044, intron 3 of 19)	AluY|SINE|Alu	45529	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
73944	chr15	51726351	51726850	+	0	NA	intron (NM_001143917, intron 1 of 2)	intron (NM_001143917, intron 1 of 2)	10462	NM_001363969	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
192234	chr6	19005151	19005250	+	0	NA	Intergenic	AluY|SINE|Alu	175280	NR_110860	101928519		NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
206844	chr7	37360471	37360700	+	0	NA	intron (NM_001206480, intron 1 of 21)	L4_A_Mam|LINE|RTE-X	-6917	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
204905	chr7	6130621	6131080	+	0	NA	intron (NM_001365764, intron 3 of 15)	MER74B|LTR|ERVL	25901	NM_001365764	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
35215	chr11	818551	819700	+	0	NA	intron (NM_020376, intron 1 of 9)	CpG	211	NM_020376	57104		NM_020376	ENSG00000177666	PNPLA2	1110001C14Rik|ATGL|FP17548|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin like phospholipase domain containing 2	protein-coding
157245	chr22	43376571	43377300	+	0	NA	Intergenic	MIRb|SINE|MIR	-23396	NR_146918	105373054		NR_146918	ENSG00000236117	LINC01639	-	long intergenic non-protein coding RNA 1639	ncRNA
75373	chr15	65632851	65632950	+	0	NA	intron (NM_001301032, intron 1 of 7)	Arthur1A|DNA|hAT-Tip100	8945	NM_001301031	9187		NM_004727	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 member 1	protein-coding
9745	chr1	53286201	53286600	+	0	NA	intron (NM_017522, intron 3 of 15)	MIR3|SINE|MIR	41670	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
79759	chr16	1358071	1358430	+	0	NA	intron (NM_032520, intron 3 of 10)	L1MB3|LINE|L1	6319	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
60856	chr13	45623571	45623730	+	0	NA	Intergenic	Intergenic	-7911	NM_182542	220081		NM_182542	ENSG00000165837	ERICH6B	FAM194B	glutamate rich 6B	protein-coding
75425	chr15	65785121	65785730	+	0	NA	intron (NM_001376919, intron 1 of 31)	AluJb|SINE|Alu	6868	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
1446	chr1	2645251	2645580	+	0	NA	exon (NM_001242672, exon 6 of 8)	exon (NM_001242672, exon 6 of 8)	-12399	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
32573	chr10	103449201	103449700	+	0	NA	exon (NM_015916, exon 3 of 4)	exon (NM_015916, exon 3 of 4)	2920	NR_046344	51063		NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator family member 2	protein-coding
184241	chr5	96661901	96662400	+	0	NA	promoter-TSS (NM_001750)	promoter-TSS (NM_001750)	113	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
19057	chr1	169845251	169845550	+	0	NA	intron (NM_001320048, intron 18 of 22)	Tigger1|DNA|TcMar-Tigger	48496	NM_020423	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
172719	chr4	2806271	2806630	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	-5841	NM_001145855	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
144773	chr20	36622501	36623180	+	0	NA	intron (NM_175077, intron 5 of 7)	MLT1D|LTR|ERVL-MaLR	17061	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
167736	chr3	131383051	131383150	+	0	NA	TTS (NM_001171906)	TTS (NM_001171906)	1326	NM_152395	131870		NM_152395	ENSG00000198585	NUDT16	-	nudix hydrolase 16	protein-coding
78353	chr15	91302801	91303200	+	0	NA	TTS (NM_001323039)	TTS (NM_001323039)	-160339	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
94052	chr17	27351221	27351850	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	57421	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
66093	chr14	59481971	59482400	+	0	NA	intron (NM_144581, intron 1 of 4)	MIR|SINE|MIR	1390	NM_001331159	112849		NM_144581	ENSG00000126790	L3HYPDH	C14orf149	trans-L-3-hydroxyproline dehydratase	protein-coding
20956	chr1	202312471	202312630	+	0	NA	intron (NM_021636, intron 16 of 17)	intron (NM_021636, intron 16 of 17)	29386	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
76297	chr15	74314701	74316100	+	0	NA	intron (NM_025055, intron 11 of 18)	intron (NM_025055, intron 11 of 18)	-3159	NM_001287181	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
14720	chr1	145962501	145963400	+	0	NA	5' UTR (NM_001039888, exon 3 of 4)	5' UTR (NM_001039888, exon 3 of 4)	1625	NM_001039888	284615		NM_001039888	ENSG00000272031	ANKRD34A	ANKRD34	ankyrin repeat domain 34A	protein-coding
60391	chr13	40952321	40952630	+	0	NA	intron (NM_001370329, intron 4 of 9)	AluJr4|SINE|Alu	29807	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
80487	chr16	2709271	2709430	+	0	NA	TTS (NM_018992)	TTS (NM_018992)	10874	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
181968	chr5	55105001	55105480	+	0	NA	intron (NM_006144, intron 1 of 4)	intron (NM_006144, intron 1 of 4)	2594	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
196191	chr6	42710471	42710630	+	0	NA	intron (NM_000322, intron 1 of 2)	intron (NM_000322, intron 1 of 2)	12047	NM_000322	5961		NM_000322	ENSG00000112619	PRPH2	AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2	peripherin 2	protein-coding
18186	chr1	160831601	160831800	+	0	NA	intron (NM_001166664, intron 7 of 7)	intron (NM_001166664, intron 7 of 7)	31187	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
162084	chr3	46885671	46885830	+	0	NA	intron (NM_001184744, intron 2 of 14)	intron (NM_001184744, intron 2 of 14)	3501	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
17062	chr1	156103571	156105280	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	-10286	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
164815	chr3	70959001	70959200	+	0	NA	non-coding (NR_146142, exon 20 of 20)	non-coding (NR_146142, exon 20 of 20)	105824	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
3692	chr1	16520521	16521050	+	0	NA	Intergenic	CpG	-6500	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
15342	chr1	149923901	149924700	+	0	NA	intron (NM_005850, intron 4 of 5)	AluJb|SINE|Alu	3503	NM_005850	10262		NM_005850	ENSG00000143368	SF3B4	AFD1|Hsh49|SAP49|SF3b49	splicing factor 3b subunit 4	protein-coding
175193	chr4	56530071	56531430	+	0	NA	exon (NM_001256475, exon 1 of 9)	exon (NM_001256475, exon 1 of 9)	144	NM_001256475	100506564		NM_001256475	ENSG00000249693	SPMAP2L	THEGL	sperm microtubule associated protein 2 like	protein-coding
127912	chr2	46303771	46304000	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	6478	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
83899	chr16	28984271	28986160	+	0	NA	TTS (NM_001142450)	TTS (NM_001142450)	163	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
94544	chr17	29586471	29586630	+	0	NA	intron (NM_001085454, intron 1 of 20)	intron (NM_001085454, intron 1 of 20)	3098	NM_014030	28964		NM_014030	ENSG00000108262	GIT1	p95-APP1	GIT ArfGAP 1	protein-coding
2583	chr1	9825211	9826280	+	0	NA	Intergenic	Intergenic	-1219	NM_014944	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
216046	chr8	9677071	9677230	+	0	NA	intron (NM_003747, intron 3 of 26)	intron (NM_003747, intron 3 of 26)	-64522	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
153788	chr22	29596371	29596530	+	0	NA	Intergenic	AluSg|SINE|Alu	-7106	NM_016418	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
7579	chr1	35176501	35177700	+	0	NA	intron (NR_136702, intron 11 of 11)	AluSq|SINE|Alu	16045	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
127283	chr2	38730871	38731400	+	0	NA	intron (NM_138801, intron 5 of 6)	AluSx1|SINE|Alu	20226	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
131256	chr2	96026921	96027180	+	0	NA	exon (NM_001321528, exon 9 of 22)	exon (NM_001321528, exon 9 of 22)	8195	NM_001321530	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
233335	chr9	137439851	137440630	+	0	NA	intron (NM_198585, intron 1 of 8)	intron (NM_198585, intron 1 of 8)	1117	NM_198585	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
228535	chr9	100691071	100691290	+	0	NA	Intergenic	L1PA2|LINE|L1	113101	NM_001018116	347273		NM_001018116	ENSG00000170681	CAVIN4	MURC|cavin-4	caveolae associated protein 4	protein-coding
222117	chr8	131912221	131912580	+	0	NA	intron (NM_001323555, intron 1 of 22)	intron (NM_001323555, intron 1 of 22)	-4373	NM_001323556	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
170715	chr3	187987751	187988380	+	0	NA	Intergenic	Intergenic	-11658	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
86633	chr16	67437601	67437880	+	0	NA	TTS (NM_000196)	TTS (NM_000196)	6619	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
236827	chrX	79183651	79184050	+	0	NA	Intergenic	Intergenic	39162	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
42002	chr11	67396801	67398030	+	0	NA	TTS (NM_001008709)	TTS (NM_001008709)	4110	NM_001243224	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
106829	chr18	24009271	24010150	+	0	NA	intron (NR_110796, intron 2 of 5)	intron (NR_110796, intron 2 of 5)	-5044	NM_001243425	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
90952	chr17	2655471	2656400	+	0	NA	intron (NM_000430, intron 2 of 10)	AluSx3|SINE|Alu	36984	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
215645	chr8	298601	298800	+	0	NA	Intergenic	Intergenic	66244	NM_001042416	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
24056	chr1	235303551	235303730	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJr|SINE|Alu	-23576	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
168061	chr3	137105221	137105580	+	0	NA	Intergenic	Intergenic	147417	NM_144717	53833		NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
145232	chr20	38922521	38923150	+	0	NA	3' UTR (NM_015568, exon 11 of 11)	3' UTR (NM_015568, exon 11 of 11)	-3582	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
113800	chr19	10571921	10572880	+	0	NA	TTS (NM_005498)	TTS (NM_005498)	-3421	NM_079421	1032		NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
39239	chr11	57662871	57663030	+	0	NA	Intergenic	L2a|LINE|L2	-5164	NM_015457	25921		NM_015457	ENSG00000156599	ZDHHC5	DHHC5|ZNF375	zinc finger DHHC-type palmitoyltransferase 5	protein-coding
120611	chr19	45031201	45031930	+	0	NA	intron (NM_006509, intron 7 of 10)	intron (NM_006509, intron 7 of 10)	-7480	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
183949	chr5	88144251	88144700	+	0	NA	Intergenic	Intergenic	124370	NM_153354	153396		NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
237963	chrX	133745351	133745950	+	0	NA	intron (NM_001164617, intron 3 of 8)	intron (NM_001164617, intron 3 of 8)	-151793	NR_148713	110806308		NR_148713	ENSG00000286096	GPC3-AS1	-	GPC3 antisense RNA 1	ncRNA
156678	chr22	41659521	41660180	+	0	NA	intron (NM_001288976, intron 11 of 12)	AluSq2|SINE|Alu	29017	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
121833	chr19	48117251	48117550	+	0	NA	intron (NR_135497, intron 26 of 27)	AluSx1|SINE|Alu	-6548	NM_001159322	8605		NM_003706	ENSG00000105499	PLA2G4C	CPLA2-gamma	phospholipase A2 group IVC	protein-coding
48478	chr12	9781451	9781830	+	0	NA	Intergenic	L1PA13|LINE|L1	-18412	NR_159359	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
180276	chr5	1797771	1798300	+	0	NA	TTS (NM_032479)	TTS (NM_032479)	1802	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
39988	chr11	62619351	62619950	+	0	NA	intron (NM_001288722, intron 2 of 4)	AluSx|SINE|Alu	2336	NM_001288722	26229		NM_012200	ENSG00000149541	B3GAT3	GLCATI|JDSCD|glcUAT-I	beta-1,3-glucuronyltransferase 3	protein-coding
152125	chr22	19953601	19954350	+	0	NA	intron (NM_001135162, intron 1 of 5)	intron (NM_001135162, intron 1 of 5)	2457	NM_001135162	1312		NM_000754	ENSG00000093010	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
129822	chr2	72146601	72146800	+	0	NA	intron (NM_019885, intron 1 of 5)	CpG	1162	NM_001277742	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
234151	chrX	10112701	10112930	+	0	NA	intron (NM_015691, intron 9 of 22)	intron (NM_015691, intron 9 of 22)	-44130	NM_001256944	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
150994	chr21	44353271	44353930	+	0	NA	promoter-TSS (NM_003307)	promoter-TSS (NM_003307)	-1	NM_001320351	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
110914	chr19	2769471	2769630	+	0	NA	intron (NM_003021, intron 1 of 11)	intron (NM_003021, intron 1 of 11)	13723	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
167113	chr3	127668071	127668430	+	0	NA	intron (NM_015720, intron 4 of 7)	intron (NM_015720, intron 4 of 7)	-4688	NM_032548	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
9276	chr1	46342051	46343630	+	0	NA	intron (NM_001256127, intron 1 of 5)	intron (NM_001256127, intron 1 of 5)	1662	NM_001256127	387338		NM_199044	ENSG00000117481	NSUN4	SHTAP	NOP2/Sun RNA methyltransferase 4	protein-coding
15708	chr1	151007811	151009730	+	0	NA	promoter-TSS (NM_001319998)	promoter-TSS (NM_001319998)	321	NR_130135	58497		NM_021222	ENSG00000143363	PRUNE1	DRES-17|DRES17|H-PRUNE|HTCD37|NMIHBA|PRUNE	prune exopolyphosphatase 1	protein-coding
227019	chr9	83820521	83821050	+	0	NA	Intergenic	L2|LINE|L2	-2948	NM_001135953	80318		NM_025211	ENSG00000165113	GKAP1	FKSG21|GKAP42	G kinase anchoring protein 1	protein-coding
224066	chr9	3732551	3732880	+	0	NA	Intergenic	Intergenic	64629	NR_121586	101929302		NR_121586	ENSG00000232104	RFX3-DT	CVAT7|RFX3-AS1	RFX3 divergent transcript	ncRNA
165708	chr3	102215171	102215330	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	51545	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
52628	chr12	56270271	56270500	+	0	NA	3' UTR (NM_001099337, exon 5 of 5)	3' UTR (NM_001099337, exon 5 of 5)	3059	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
61163	chr13	49033301	49033500	+	0	NA	intron (NM_001079673, intron 2 of 25)	intron (NM_001079673, intron 2 of 25)	56738	NR_103528	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
192499	chr6	24990801	24992230	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	50773	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
162661	chr3	48911771	48911930	+	0	NA	Intergenic	AluY|SINE|Alu	-6992	NM_001349230	10425		NM_006321	ENSG00000177479	ARIH2	ARI2|TRIAD1	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding
163032	chr3	49811951	49812050	+	0	NA	exon (NM_003335, exon 8 of 24)	exon (NM_003335, exon 8 of 24)	1953	NM_003335	7318		NM_003335	ENSG00000182179	UBA7	D8|UBA1B|UBE1L|UBE2|UBE7	ubiquitin like modifier activating enzyme 7	protein-coding
174631	chr4	40313621	40314080	+	0	NA	intron (NR_121641, intron 2 of 3)	AluSz|SINE|Alu	-2634	NR_121640	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
168783	chr3	151796151	151796250	+	0	NA	intron (NR_110203, intron 1 of 2)	(AGGGG)n|Simple_repeat|Simple_repeat	-17916	NM_001086	13		NM_001086	ENSG00000114771	AADAC	CES5A1|DAC	arylacetamide deacetylase	protein-coding
159653	chr3	15331401	15332000	+	0	NA	intron (NM_001018009, intron 1 of 8)	intron (NM_001018009, intron 1 of 8)	886	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
47925	chr12	6780621	6780880	+	0	NA	Intergenic	Intergenic	8230	NM_002286	3902		NM_002286	ENSG00000089692	LAG3	CD223	lymphocyte activating 3	protein-coding
198563	chr6	106997601	106997900	+	0	NA	Intergenic	Intergenic	-20895	NM_001291738	100133941		NM_013230	ENSG00000272398	CD24	CD24A	CD24 molecule	protein-coding
20620	chr1	199010421	199010900	+	0	NA	intron (NR_110525, intron 1 of 2)	MIR|SINE|MIR	-5473	NR_126351	104266961		NR_126351	ENSG00000235492	LINC01221	TCONS_00000366	long intergenic non-protein coding RNA 1221	ncRNA
171384	chr3	196146601	196147000	+	0	NA	intron (NR_034088, intron 2 of 2)	AluJo|SINE|Alu	4164	NR_034088	401109		NM_001001699	ENSG00000224652	LINC00885	-	long intergenic non-protein coding RNA 885	ncRNA
100012	chr17	57916951	57917400	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	-13786	NM_001292025	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
195897	chr6	41715771	41716700	+	0	NA	intron (NM_001167827, intron 1 of 8)	MIR|SINE|MIR	17375	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
223471	chr8	144045601	144046480	+	0	NA	intron (NM_198572, intron 4 of 4)	intron (NM_198572, intron 4 of 4)	-3358	NR_158554	392275		NR_158554		SMPD5	MA-nSMase	sphingomyelin phosphodiesterase 5 (pseudogene)	pseudo
161713	chr3	43755451	43756250	+	0	NA	Intergenic	Intergenic	-64256	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
159903	chr3	16904671	16905830	+	0	NA	intron (NM_001144382, intron 1 of 5)	Charlie24|DNA|hAT-Charlie	20295	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
90537	chr17	1487711	1489380	+	0	NA	intron (NM_001080779, intron 1 of 31)	MIRb|SINE|MIR	-2785	NM_001080950	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
177880	chr4	128810801	128811700	+	0	NA	promoter-TSS (NM_001287443)	promoter-TSS (NM_001287443)	-20	NM_001287442	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
178314	chr4	145557671	145558000	+	0	NA	exon (NM_005900, exon 7 of 7)	exon (NM_005900, exon 7 of 7)	-40641	NR_126371	104326058		NR_126371	ENSG00000250902	SMAD1-AS1	-	SMAD1 antisense RNA 1	ncRNA
40981	chr11	65383801	65384000	+	0	NA	promoter-TSS (NM_001278251)	promoter-TSS (NM_001278251)	-199	NM_001278251	283130		NM_182556	ENSG00000162241	SLC25A45	-	solute carrier family 25 member 45	protein-coding
5530	chr1	25808371	25809650	+	0	NA	intron (NM_206926, intron 4 of 11)	intron (NM_206926, intron 4 of 11)	8817	NM_020451	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
88747	chr16	86517851	86517950	+	0	NA	Intergenic	Intergenic	7373	NM_001451	2294		NM_001451	ENSG00000103241	FOXF1	ACDMPV|FKHL5|FREAC1	forkhead box F1	protein-coding
214986	chr7	152133571	152134080	+	0	NA	Intergenic	Intergenic	58788	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
56611	chr12	118135701	118137700	+	0	NA	intron (NM_002567, intron 1 of 3)	CpG	576	NM_002567	5037		NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
3214	chr1	13762621	13763430	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	13610	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
11658	chr1	91808451	91808750	+	0	NA	intron (NR_036634, intron 2 of 17)	AluSx|SINE|Alu	77551	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
143722	chr20	32284151	32284250	+	0	NA	intron (NM_004798, intron 1 of 8)	AluJr|SINE|Alu	6549	NM_004798	9371		NM_004798	ENSG00000101350	KIF3B	FLA8|HH0048|KLP-11|OTSC12|RP89	kinesin family member 3B	protein-coding
130917	chr2	87475901	87476580	+	0	NA	intron (NR_024205, intron 2 of 2)	intron (NR_024205, intron 2 of 2)	6290	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
200919	chr6	139145621	139145900	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	10680	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
233881	chrX	1576221	1577030	+	0	NA	Intergenic	Intergenic	-14979	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
226599	chr9	73157401	73157630	+	0	NA	intron (NM_000700, intron 1 of 12)	AluSx1|SINE|Alu	5650	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
77958	chr15	89365621	89365880	+	0	NA	intron (NR_133002, intron 1 of 5)	intron (NR_133002, intron 1 of 5)	-2267	NR_029692	407051		NR_029692	ENSG00000284329	MIR9-3	MIRN9-3|hsa-mir-9-3|miRNA9-3|mir-9-3	microRNA 9-3	ncRNA
224107	chr9	4597621	4597880	+	0	NA	TTS (NM_001353489)	TTS (NM_001353489)	64473	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
195436	chr6	36961321	36962080	+	0	NA	intron (NM_153370, intron 3 of 6)	intron (NM_153370, intron 3 of 6)	6962	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
199642	chr6	121849501	121849700	+	0	NA	Intergenic	Intergenic	413954	NM_000165	2697		NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
168684	chr3	150606051	150607130	+	0	NA	intron (NM_016275, intron 1 of 5)	intron (NM_016275, intron 1 of 5)	3269	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
80764	chr16	3168051	3168730	+	0	NA	Intergenic	AluJb|SINE|Alu	-19814	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
159754	chr3	16268001	16268480	+	0	NA	intron (NM_001352980, intron 1 of 9)	intron (NM_001352980, intron 1 of 9)	3028	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
149012	chr21	14533791	14535250	+	0	NA	intron (NM_001286523, intron 1 of 8)	AluYh3|SINE|Alu	11795	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
171230	chr3	195777451	195777550	+	0	NA	intron (NM_138297, intron 1 of 22)	intron (NM_138297, intron 1 of 22)	34429	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
41243	chr11	65785301	65785830	+	0	NA	Intergenic	Intergenic	-1498	NM_004561	5017		NM_004561	ENSG00000172818	OVOL1	HOVO1	ovo like transcriptional repressor 1	protein-coding
209592	chr7	77541051	77541350	+	0	NA	intron (NM_001131008, intron 1 of 17)	AluJb|SINE|Alu	3157	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
124735	chr2	6832901	6833300	+	0	NA	intron (NR_126359, intron 2 of 3)	A-rich|Low_complexity|Low_complexity	7364	NR_126359	104326052		NR_126359		NRIR	lncCMPK2|lncRNA-CMPK2	negative regulator of interferon response	ncRNA
211056	chr7	102461601	102461800	+	0	NA	intron (NM_017621, intron 1 of 2)	intron (NM_017621, intron 1 of 2)	3163	NM_017621	54784		NM_017621	ENSG00000160993	ALKBH4	ABH4	alkB homolog 4, lysine demethylase	protein-coding
215173	chr7	155665951	155666250	+	0	NA	intron (NM_053043, intron 2 of 17)	MLT2B1|LTR|ERVL	21439	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
72613	chr15	37102351	37102450	+	0	NA	Intergenic	Intergenic	-1089	NM_001220482	4212		NM_002399	ENSG00000134138	MEIS2	CPCMR|HsT18361|MRG1	Meis homeobox 2	protein-coding
162805	chr3	49110171	49110330	+	0	NA	exon (NM_001199161, exon 26 of 27)	exon (NM_001199161, exon 26 of 27)	-5493	NM_001272073	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
44081	chr11	95688271	95689800	+	0	NA	Intergenic	Intergenic	100747	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
136246	chr2	174615871	174616550	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-17979	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
235121	chrX	40733051	40733550	+	0	NA	intron (NM_004229, intron 1 of 30)	AluJb|SINE|Alu	2242	NM_004229	9282		NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
221336	chr8	123148971	123149430	+	0	NA	intron (NM_001363151, intron 19 of 19)	L3|LINE|CR1	-29847	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
161614	chr3	43219901	43220100	+	0	NA	Intergenic	Intergenic	-66512	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
40792	chr11	64895101	64895900	+	0	NA	intron (NM_015104, intron 39 of 40)	intron (NM_015104, intron 39 of 40)	-2051	NR_133638	105369343		NR_133638	ENSG00000229719	MIR194-2HG	-	MIR194-2 host gene	ncRNA
123255	chr19	53335271	53335430	+	0	NA	intron (NM_138374, intron 1 of 3)	AluJb|SINE|Alu	1601	NM_138374	91664		NM_138374	ENSG00000213799	ZNF845	-	zinc finger protein 845	protein-coding
68019	chr14	75138351	75139250	+	0	NA	intron (NM_006827, intron 3 of 4)	intron (NM_006827, intron 3 of 4)	-11752	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
181892	chr5	54529621	54530280	+	0	NA	intron (NM_001145427, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	12191	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
216824	chr8	22577951	22579600	+	0	NA	promoter-TSS (NM_021630)	promoter-TSS (NM_021630)	34	NM_021630	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
127816	chr2	44932601	44933000	+	0	NA	intron (NR_147194, intron 2 of 2)	CpG	6088	NR_147194	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
13568	chr1	115991651	115991950	+	0	NA	intron (NM_018420, intron 1 of 11)	intron (NM_018420, intron 1 of 11)	-14524	NR_125970	101928977		NR_125970		LOC101928977	-	uncharacterized LOC101928977	ncRNA
207350	chr7	44076301	44077080	+	0	NA	intron (NR_104299, intron 5 of 10)	intron (NR_104299, intron 5 of 10)	-3257	NR_106897	102465504		NR_106897	ENSG00000283969	MIR6838	hsa-mir-6838	microRNA 6838	ncRNA
202915	chr6	160072121	160072580	+	0	NA	intron (NM_000876, intron 32 of 47)	intron (NM_000876, intron 32 of 47)	-20732	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
164307	chr3	57679021	57679330	+	0	NA	intron (NM_152678, intron 1 of 19)	MLT1A|LTR|ERVL-MaLR	13902	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
36581	chr11	6673901	6674400	+	0	NA	Intergenic	L2|LINE|L2	9190	NM_022061	63875		NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26|bL17m	mitochondrial ribosomal protein L17	protein-coding
124869	chr2	8301751	8302600	+	0	NA	intron (NR_034135, intron 2 of 8)	intron (NR_034135, intron 2 of 8)	26244	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
179538	chr4	184971251	184971750	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-33060	NR_039660	100616111		NR_039660	ENSG00000263458	MIR4455	-	microRNA 4455	ncRNA
127531	chr2	42320151	42320450	+	0	NA	intron (NM_019063, intron 19 of 22)	FLAM_C|SINE|Alu	39738	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
174709	chr4	42635871	42636750	+	0	NA	intron (NM_001105529, intron 1 of 35)	intron (NM_001105529, intron 1 of 35)	20795	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
50857	chr12	49135501	49135700	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4205	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
1843	chr1	6288601	6289200	+	0	NA	intron (NM_007274, intron 7 of 8)	intron (NM_007274, intron 7 of 8)	-27802	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
63233	chr13	113926721	113927380	+	0	NA	non-coding (NR_047495, exon 1 of 1)	non-coding (NR_047495, exon 1 of 1)	1941	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
201854	chr6	150310621	150311780	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-57812	NM_203395	389434		NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
73037	chr15	40847271	40847630	+	0	NA	intron (NM_181642, intron 2 of 10)	intron (NM_181642, intron 2 of 10)	-2926	NR_146466	102724362		NR_146466	ENSG00000261183	SPINT1-AS1	-	SPINT1 antisense RNA 1	ncRNA
139776	chr2	230221351	230221800	+	0	NA	intron (NM_001378444, intron 2 of 19)	intron (NM_001378444, intron 2 of 19)	-1591	NM_004510	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
126188	chr2	26763701	26765630	+	0	NA	intron (NM_017877, intron 1 of 5)	intron (NM_017877, intron 1 of 5)	381	NM_017877	54978		NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
161136	chr3	38637071	38637230	+	0	NA	intron (NM_198056, intron 1 of 27)	intron (NM_198056, intron 1 of 27)	12537	NM_001354701	6331		NM_000335	ENSG00000183873	SCN5A	CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1	sodium voltage-gated channel alpha subunit 5	protein-coding
138853	chr2	216633121	216634250	+	0	NA	exon (NM_000597, exon 1 of 4)	exon (NM_000597, exon 1 of 4)	265	NM_000597	3485		NM_000597	ENSG00000115457	IGFBP2	IBP2|IGF-BP53	insulin like growth factor binding protein 2	protein-coding
13739	chr1	116827151	116827880	+	0	NA	Intergenic	L2|LINE|L2	73085	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
120367	chr19	43619021	43620780	+	0	NA	promoter-TSS (NM_182498)	promoter-TSS (NM_182498)	-271	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
206026	chr7	26667521	26667830	+	0	NA	3' UTR (NM_001303468, exon 13 of 13)	3' UTR (NM_001303468, exon 13 of 13)	29804	NR_161201	285941		NR_161201	ENSG00000222004	LINC02860	C7orf71	long intergenic non-protein coding RNA 2860	ncRNA
160809	chr3	33018221	33018680	+	0	NA	exon (NM_001079811, exon 13 of 16)	exon (NM_001079811, exon 13 of 16)	66806	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
189554	chr5	174459901	174460100	+	0	NA	intron (NR_125806, intron 2 of 5)	intron (NR_125806, intron 2 of 5)	123646	NR_125806	101928176		NR_125806	ENSG00000249306	LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
96218	chr17	39774141	39774530	+	0	NA	intron (NM_001257413, intron 3 of 3)	GA-rich|Low_complexity|Low_complexity	3890	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
55383	chr12	104371751	104372530	+	0	NA	Intergenic	Charlie3|DNA|hAT-Charlie	68401	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
186900	chr5	139574771	139575400	+	0	NA	intron (NM_181838, intron 2 of 7)	L1ME2|LINE|L1	13746	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
141875	chr20	727971	728730	+	0	NA	Intergenic	CpG	40150	NM_033409	113278		NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
213152	chr7	131513371	131514030	+	0	NA	intron (NM_005397, intron 1 of 7)	intron (NM_005397, intron 1 of 7)	42928	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
190495	chr5	180355551	180355650	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2264	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
128236	chr2	54429921	54430280	+	0	NA	Intergenic	Intergenic	-26227	NM_003128	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
141340	chr2	240578271	240578700	+	0	NA	3' UTR (NM_018226, exon 11 of 11)	3' UTR (NM_018226, exon 11 of 11)	7831	NR_103792	101752400		NR_103792	ENSG00000260942	CAPN10-DT	CAPN10-AS1|locus959	CAPN10 divergent transcript	ncRNA
184374	chr5	98750771	98750930	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-17782	NM_001366510	285704		NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule BMP co-receptor b	protein-coding
178087	chr4	140155671	140156130	+	0	NA	Intergenic	Intergenic	-1716	NM_018717	55534		NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3	mastermind like transcriptional coactivator 3	protein-coding
231555	chr9	131483301	131483500	+	0	NA	exon (NM_001384822, exon 23 of 31)	exon (NM_001384822, exon 23 of 31)	-2265	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
129926	chr2	73387451	73387750	+	0	NA	intron (NM_015120, intron 1 of 22)	L2b|LINE|L2	1764	NM_001378454	7840		NM_015120	ENSG00000116127	ALMS1	ALSS	ALMS1 centrosome and basal body associated protein	protein-coding
79601	chr16	1066721	1067050	+	0	NA	intron (NR_027242, intron 3 of 3)	MSTA|LTR|ERVL-MaLR	-5871	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
73814	chr15	48876571	48876730	+	0	NA	intron (NM_203349, intron 4 of 11)	MLT2A1|LTR|ERVL	-1484	NM_014335	23741		NM_014335	ENSG00000255302	EID1	C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21	EP300 interacting inhibitor of differentiation 1	protein-coding
37789	chr11	32436201	32436600	+	0	NA	promoter-TSS (NM_024426)	promoter-TSS (NM_024426)	361	NR_120546	51352		NM_015855	ENSG00000183242	WT1-AS	WIT-1|WIT1|WT1-AS1|WT1AS	WT1 antisense RNA	ncRNA
116849	chr19	18602121	18602380	+	0	NA	intron (NM_004750, intron 1 of 8)	intron (NM_004750, intron 1 of 8)	4549	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
74664	chr15	61835271	61835750	+	0	NA	Intergenic	Intergenic	105592	NR_146448	100506530		NR_146448	ENSG00000259284	LINC02349	-	long intergenic non-protein coding RNA 2349	ncRNA
47717	chr12	6456321	6456730	+	0	NA	intron (NR_147127, intron 3 of 8)	AluSp|SINE|Alu	4483	NR_147127	55080		NM_018009	ENSG00000139192	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein like	protein-coding
205625	chr7	22510651	22511250	+	0	NA	Intergenic	Intergenic	-10668	NM_207342	256227		NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
91954	chr17	7380521	7380780	+	0	NA	promoter-TSS (NM_003985)	promoter-TSS (NM_003985)	-439	NM_001251902	8711		NM_003985	ENSG00000174292	TNK1	KOS1	tyrosine kinase non receptor 1	protein-coding
186650	chr5	138568401	138569100	+	0	NA	intron (NM_004134, intron 5 of 16)	intron (NM_004134, intron 5 of 16)	6651	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
147844	chr20	62796001	62798030	+	0	NA	intron (NR_136405, intron 1 of 4)	intron (NR_136405, intron 1 of 4)	542	NR_136405	55257		NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG domain binding protein	protein-coding
171017	chr3	194954251	194954350	+	0	NA	Intergenic	Intergenic	-140288	NR_104188	100874528		NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
166218	chr3	112084971	112085130	+	0	NA	Intergenic	Intergenic	-1285	NM_001171747	79669		NM_024616	ENSG00000114529	C3orf52	HYPT15|TTMP	chromosome 3 open reading frame 52	protein-coding
193913	chr6	31631621	31631880	+	0	NA	exon (NM_080686, exon 16 of 31).2	exon (NM_080686, exon 16 of 31).2	-2037	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
75522	chr15	66501501	66501930	+	0	NA	promoter-TSS (NR_002443)	promoter-TSS (NR_002443)	376	NR_002442	595099		NR_002442	ENSG00000202529	SNORD18B	U18B	small nucleolar RNA, C/D box 18B	snoRNA
78135	chr15	90391601	90391830	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	3473	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
32322	chr10	102188751	102189980	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	-36934	NM_152310	83401		NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
172552	chr4	2400851	2401530	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	17455	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
151341	chr21	45636001	45636500	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-7475	NM_001382287	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
193282	chr6	30009001	30009680	+	0	NA	non-coding (NR_024240, exon 6 of 7)	non-coding (NR_024240, exon 6 of 7)	3369	NR_024240	3137		NR_024240	ENSG00000290574	HLA-J	CDA12|D6S203|HLA-59|HLA-CDA12	major histocompatibility complex, class I, J (pseudogene)	pseudo
92221	chr17	7880521	7880780	+	0	NA	intron (NM_001330111, intron 2 of 4)	intron (NM_001330111, intron 2 of 4)	-4146	NM_001005271	1107		NM_001272	ENSG00000170004	CHD3	Mi-2a|Mi2-ALPHA|SNIBCPS|ZFH	chromodomain helicase DNA binding protein 3	protein-coding
20571	chr1	198729551	198729850	+	0	NA	intron (NM_002838, intron 17 of 32)	L2b|LINE|L2	90660	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
203219	chr6	168343801	168344200	+	0	NA	Intergenic	Intergenic	-24223	NR_104425	168002		NM_214462	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled binding antagonist of beta catenin 2	protein-coding
133217	chr2	113177801	113178400	+	0	NA	intron (NM_012455, intron 1 of 16)	AluSx1|SINE|Alu	4129	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
181725	chr5	50682671	50683030	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	15436	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
206277	chr7	29882671	29883030	+	0	NA	intron (NM_001080529, intron 4 of 8)	intron (NM_001080529, intron 4 of 8)	76296	NM_001080529	644150		NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family member 3	protein-coding
64503	chr14	24337571	24337730	+	0	NA	intron (NM_006871, intron 7 of 9)	intron (NM_006871, intron 7 of 9)	2341	NM_006871	11035		NM_006871	ENSG00000129465	RIPK3	RIP3	receptor interacting serine/threonine kinase 3	protein-coding
136279	chr2	174702071	174702230	+	0	NA	Intergenic	MIR|SINE|MIR	-17650	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
18868	chr1	167938271	167938530	+	0	NA	intron (NM_001349780, intron 1 of 17)	L1ME3G|LINE|L1	-1328	NM_001143674	25874		NM_015415	ENSG00000143158	MPC2	BRP44|SLC54A2	mitochondrial pyruvate carrier 2	protein-coding
85247	chr16	48378401	48379000	+	0	NA	intron (NM_003031, intron 1 of 1)	intron (NM_003031, intron 1 of 1)	6713	NM_003031	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
229974	chr9	126777701	126777900	+	0	NA	Intergenic	Intergenic	-27206	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
107423	chr18	46194271	46194430	+	0	NA	intron (NM_145055, intron 1 of 4)	AluSg7|SINE|Alu	20316	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
120605	chr19	45026401	45026600	+	0	NA	intron (NM_006509, intron 6 of 10)	AluSx|SINE|Alu	-12545	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
176099	chr4	82992551	82993250	+	0	NA	intron (NM_001115007, intron 1 of 12)	AluY|SINE|Alu	17923	NM_194282	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
31704	chr10	97646851	97647150	+	0	NA	intron (NM_018425, intron 1 of 8)	AluSz|SINE|Alu	6314	NM_018425	55361		NM_018425	ENSG00000155252	PI4K2A	NEDMSB|PI4KII|PIK42A	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
231632	chr9	131590221	131590620	+	0	NA	intron (NM_001377935, intron 18 of 26)	intron (NM_001377935, intron 18 of 26)	44897	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
172635	chr4	2535101	2537980	+	0	NA	promoter-TSS (NM_001366318)	promoter-TSS (NM_001366318)	-107	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
89143	chr16	88518151	88518950	+	0	NA	intron (NM_153813, intron 4 of 9)	(GGTG)n|Simple_repeat|Simple_repeat	12503	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
151847	chr22	18536871	18537030	+	0	NA	non-coding (NR_003563, exon 12 of 15)	non-coding (NR_003563, exon 12 of 15)	9148	NM_001242313	728229		NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
18161	chr1	160779951	160780550	+	0	NA	Intergenic	Intergenic	-15924	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
185853	chr5	132493101	132493680	+	0	NA	Intergenic	Intergenic	-2617	NM_001354925	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
177752	chr4	122619101	122619300	+	0	NA	non-coding (NR_104126, exon 1 of 11)	non-coding (NR_104126, exon 1 of 11)	217	NR_104126	100996941		NR_104126	ENSG00000227145	IL21-AS1	-	IL21 antisense RNA 1	ncRNA
48036	chr12	6957101	6957800	+	0	NA	intron (NM_002831, intron 9 of 15)	intron (NM_002831, intron 9 of 15)	-5795	NR_135032	105369635		NR_135032	ENSG00000257084	MIR200CHG	U47924.27	MIR200C and MIR141 host gene	ncRNA
164665	chr3	66938471	66938630	+	0	NA	Intergenic	Intergenic	-59757	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
112933	chr19	7690351	7691100	+	0	NA	intron (NM_002002, intron 8 of 10)	intron (NM_002002, intron 8 of 10)	8754	NM_001207019	2208		NM_002002	ENSG00000104921	FCER2	BLAST-2|CD23|CD23A|CLEC4J|FCE2|FCErII|IGEBF	Fc epsilon receptor II	protein-coding
219671	chr8	80507301	80508230	+	0	NA	intron (NM_023929, intron 2 of 6)	AluJo|SINE|Alu	21539	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
143895	chr20	32577471	32577830	+	0	NA	intron (NM_001256798, intron 1 of 10)	FLAM_A|SINE|Alu	7683	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
120955	chr19	45697151	45697900	+	0	NA	intron (NM_017659, intron 3 of 6)	L2c|LINE|L2	4859	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
8674	chr1	41900701	41900900	+	0	NA	intron (NR_038260, intron 1 of 2)	L2b|LINE|L2	18122	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
29712	chr10	72073671	72074500	+	0	NA	intron (NM_014767, intron 2 of 11)	intron (NM_014767, intron 2 of 11)	14466	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
1060	chr1	1901821	1902830	+	0	NA	Intergenic	Intergenic	11145	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
176142	chr4	83138351	83138450	+	0	NA	Intergenic	AluJr|SINE|Alu	-23671	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
66572	chr14	63438071	63438630	+	0	NA	intron (NR_104104, intron 2 of 12)	intron (NR_104104, intron 2 of 12)	69888	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
103083	chr17	77324971	77326350	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	6145	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
45940	chr11	121318901	121319540	+	0	NA	Intergenic	Intergenic	26352	NM_001024956	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
2299	chr1	8983621	8984080	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	37982	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
108732	chr18	77094671	77094830	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	38033	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
122731	chr19	50028151	50028250	+	0	NA	intron (NM_001308424, intron 1 of 3)	AluY|SINE|Alu	2195	NM_015428	25888		NM_015428	ENSG00000142528	ZNF473	ZFP100|ZN473	zinc finger protein 473	protein-coding
59938	chr13	31156201	31156630	+	0	NA	intron (NM_001286503, intron 2 of 16)	intron (NM_001286503, intron 2 of 16)	5489	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
22417	chr1	220055571	220055730	+	0	NA	Intergenic	AluSx|SINE|Alu	-9145	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
78514	chr15	92939521	92939780	+	0	NA	exon (NM_001271, exon 7 of 39)	exon (NM_001271, exon 7 of 39)	35251	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
155151	chr22	37669451	37670150	+	0	NA	Intergenic	L1MC4|LINE|L1	-5836	NM_002305	3956		NM_002305	ENSG00000100097	LGALS1	GAL1|GBP	galectin 1	protein-coding
15013	chr1	148254751	148255200	+	0	NA	Intergenic	Intergenic	-7904	NR_120331	101927468		NR_120331	ENSG00000227733	LOC101927468	-	uncharacterized LOC101927468	ncRNA
164801	chr3	69433421	69433880	+	0	NA	Intergenic	Intergenic	-47562	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
83422	chr16	27236961	27238830	+	0	NA	intron (NM_145080, intron 2 of 7)	intron (NM_145080, intron 2 of 7)	-30310	NR_037184	400512		NR_037184	ENSG00000245888	NSMCE1-DT	-	NSMCE1 divergent transcript	ncRNA
53062	chr12	57695071	57695230	+	0	NA	intron (NM_001261420, intron 2 of 13)	intron (NM_001261420, intron 2 of 13)	1018	NM_006812	10956		NM_006812	ENSG00000135506	OS9	ERLEC2|OS-9	OS9 endoplasmic reticulum lectin	protein-coding
233014	chr9	137015701	137015900	+	0	NA	exon (NM_001606, exon 23 of 49)	exon (NM_001606, exon 23 of 49)	-11664	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
120861	chr19	45528971	45529730	+	0	NA	exon (NM_001017989, exon 2 of 2)	exon (NM_001017989, exon 2 of 2)	21871	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
59289	chr13	24257601	24257800	+	0	NA	intron (NM_153023, intron 3 of 11)	intron (NM_153023, intron 3 of 11)	-3261	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
35155	chr11	746801	748450	+	0	NA	intron (NM_006755, intron 1 of 7)	CpG	161	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
145150	chr20	38833701	38834600	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	28453	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
46882	chr11	134027321	134028380	+	0	NA	Intergenic	Intergenic	-4422	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
228806	chr9	111912801	111913580	+	0	NA	intron (NM_003358, intron 1 of 8)	Kanga1c|DNA|TcMar-Tc2	16376	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
106074	chr18	9118421	9119400	+	0	NA	intron (NM_021074, intron 2 of 7)	Charlie4z|DNA|hAT-Charlie	16211	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
170701	chr3	187918751	187920000	+	0	NA	Intergenic	Intergenic	57032	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
99716	chr17	50883501	50884430	+	0	NA	Intergenic	L2b|LINE|L2	-15987	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
70698	chr14	103179121	103179380	+	0	NA	Intergenic	Intergenic	9778	NR_033938	100131366		NR_033938	ENSG00000251533	LINC00605	-	long intergenic non-protein coding RNA 605	ncRNA
49341	chr12	22101051	22101450	+	0	NA	Intergenic	L1PREC2|LINE|L1	55032	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
38175	chr11	36349801	36350600	+	0	NA	intron (NM_001160167, intron 1 of 8)	(GT)n|Simple_repeat|Simple_repeat	-25785	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
183872	chr5	87271871	87272300	+	0	NA	intron (NM_022650, intron 1 of 24)	AluSq2|SINE|Alu	3148	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
6458	chr1	28261301	28261900	+	0	NA	intron (NM_031459, intron 1 of 9)	intron (NM_031459, intron 1 of 9)	2082	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
71402	chr14	105528021	105531100	+	0	NA	exon (NM_001331238, exon 2 of 2)	exon (NM_001331238, exon 2 of 2)	-2295	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
16437	chr1	154572101	154572330	+	0	NA	intron (NM_000748, intron 5 of 5)	CpG	4437	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
103389	chr17	78155001	78155450	+	0	NA	intron (NM_001163075, intron 2 of 4)	MER20|DNA|hAT-Charlie	8840	NM_001163075	100141515		NM_001163075	ENSG00000187997	C17orf99	IL-40|UNQ464	chromosome 17 open reading frame 99	protein-coding
233387	chr9	137534571	137535350	+	0	NA	intron (NM_001098537, intron 8 of 34)	intron (NM_001098537, intron 8 of 34)	15442	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
228587	chr9	104927301	104927500	+	0	NA	intron (NM_005502, intron 1 of 49)	intron (NM_005502, intron 1 of 49)	755	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
222052	chr8	130283671	130283830	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	12783	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
208051	chr7	56050101	56050580	+	0	NA	intron (NM_001370518, intron 1 of 10)	AluJo|SINE|Alu	1104	NM_001370506	5723		NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding
118550	chr19	36126771	36126930	+	0	NA	TTS (NM_001300971)	TTS (NM_001300971)	11080	NM_001300971	1155		NM_001281	ENSG00000105254	TBCB	CG22|CKAP1|CKAPI	tubulin folding cofactor B	protein-coding
116876	chr19	18659101	18659680	+	0	NA	intron (NM_001345983, intron 1 of 2)	intron (NM_001345983, intron 1 of 2)	14752	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
204911	chr7	6158471	6158630	+	0	NA	intron (NM_032172, intron 16 of 17)	intron (NM_032172, intron 16 of 17)	13587	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
190213	chr5	178227301	178228050	+	0	NA	intron (NM_153373, intron 3 of 12)	L2c|LINE|L2	5127	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
4487	chr1	21622221	21623030	+	0	NA	intron (NM_001350524, intron 5 of 27)	CpG	29273	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
6289	chr1	27610771	27611350	+	0	NA	Intergenic	Intergenic	-6916	NM_001371928	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
214578	chr7	150623851	150623950	+	0	NA	Intergenic	AluJo|SINE|Alu	8485	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
221517	chr8	124640551	124641250	+	0	NA	intron (NM_001363300, intron 3 of 12)	Tigger13a|DNA|TcMar-Tigger	87573	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
81996	chr16	11904921	11905180	+	0	NA	intron (NM_001130007, intron 1 of 14)	AluJb|SINE|Alu	10906	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
190982	chr6	2998101	2999000	+	0	NA	Intergenic	Intergenic	-1266	NM_001290221	4835		NM_000904	ENSG00000124588	NQO2	DHQV|DIA6|NMOR2|QR2	N-ribosyldihydronicotinamide:quinone dehydrogenase 2	protein-coding
29224	chr10	69051301	69051830	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-36038	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
32092	chr10	101138501	101138900	+	0	NA	TTS (NM_001195517)	TTS (NM_001195517)	2566	NR_130724	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
10683	chr1	72284621	72285250	+	0	NA	Intergenic	Intergenic	-2396	NM_173808	257194		NM_173808	ENSG00000172260	NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding
133030	chr2	111906451	111906750	+	0	NA	intron (NM_006343, intron 1 of 18)	intron (NM_006343, intron 1 of 18)	7993	NM_006343	10461		NM_006343	ENSG00000153208	MERTK	MER|RP38|Tyro12|c-Eyk|c-mer	MER proto-oncogene, tyrosine kinase	protein-coding
51644	chr12	53010301	53011350	+	0	NA	intron (NM_001300821, intron 1 of 14)	AluSx|SINE|Alu	4369	NM_001330654	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
106938	chr18	26550151	26550630	+	0	NA	promoter-TSS (NM_001258221)	promoter-TSS (NM_001258221)	-576	NM_001258221	284252		NM_198991	ENSG00000134504	KCTD1	C18orf5	potassium channel tetramerization domain containing 1	protein-coding
212332	chr7	127396121	127396450	+	0	NA	Intergenic	Intergenic	-3577	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
197681	chr6	85595971	85596550	+	0	NA	Intergenic	Intergenic	-2104	NM_001350536	57231		NM_020468	ENSG00000135317	SNX14	RGS-PX2|SCAR20	sorting nexin 14	protein-coding
176393	chr4	88737551	88738130	+	0	NA	intron (NM_014883, intron 20 of 23)	intron (NM_014883, intron 20 of 23)	28051	NR_002806	285512		NR_002806	ENSG00000248019	FAM13A-AS1	FAM13A1OS|FAM13AOS|NCRNA00039	FAM13A antisense RNA 1	ncRNA
229038	chr9	114326771	114327280	+	0	NA	TTS (NM_000607)	TTS (NM_000607)	-2844	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
77241	chr15	81298651	81299080	+	0	NA	intron (NR_148035, intron 13 of 18)	intron (NR_148035, intron 13 of 18)	1895	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
139749	chr2	229901321	229901580	+	0	NA	intron (NM_001348335, intron 1 of 5)	AluSx|SINE|Alu	20229	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
122609	chr19	49800821	49801480	+	0	NA	intron (NM_014203, intron 12 of 23)	intron (NM_014203, intron 12 of 23)	9284	NR_106857	102465479		NR_106857	ENSG00000276270	MIR6799	hsa-mir-6799	microRNA 6799	ncRNA
56040	chr12	110447671	110448200	+	0	NA	intron (NM_001287222, intron 1 of 6)	AluJo|SINE|Alu	2402	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
209747	chr7	87200071	87200850	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	19272	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
221491	chr8	124524771	124525130	+	0	NA	intron (NM_032026, intron 1 of 11)	intron (NM_032026, intron 1 of 11)	14135	NM_032026	83940		NM_032026	ENSG00000147687	TATDN1	CDA11	TatD DNase domain containing 1	protein-coding
219358	chr8	70348521	70348780	+	0	NA	intron (NM_001321703, intron 1 of 22)	L2c|LINE|L2	54740	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
153439	chr22	25074971	25075650	+	0	NA	intron (NM_001145206, intron 4 of 10)	MER20|DNA|hAT-Charlie	37382	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
86513	chr16	67109201	67110750	+	0	NA	promoter-TSS (NM_001320542)	promoter-TSS (NM_001320542)	34	NM_001320540	80262		NM_025187	ENSG00000125149	PHAF1	C16orf6|C16orf70|LIN10|MYTHO|lin-10	phagosome assembly factor 1	protein-coding
33077	chr10	110892171	110892330	+	0	NA	intron (NM_145341, intron 9 of 12)	L1M4|LINE|L1	-5840	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
63315	chr13	114000121	114000900	+	0	NA	intron (NM_001320822, intron 19 of 23).2	intron (NM_001320822, intron 19 of 23).2	-26434	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
170639	chr3	187040651	187041000	+	0	NA	intron (NM_173217, intron 3 of 6)	intron (NM_173217, intron 3 of 6)	2107	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
215720	chr8	1735471	1736180	+	0	NA	Intergenic	Intergenic	27509	NR_134302	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
16955	chr1	155932301	155932500	+	0	NA	intron (NM_014949, intron 2 of 13)	intron (NM_014949, intron 2 of 13)	2013	NM_014949	22889		NM_014949	ENSG00000132680	KHDC4	BLOM7|KIAA0907|SNORA80EHG	KH domain containing 4, pre-mRNA splicing factor	protein-coding
151525	chr21	46439201	46439400	+	0	NA	intron (NM_006031, intron 41 of 46)	intron (NM_006031, intron 41 of 46)	-19591	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
52446	chr12	55928951	55929990	+	0	NA	Intergenic	Intergenic	-1576	NM_032345	84305		NM_032345	ENSG00000170473	PYM1	PYM|WIBG	PYM homolog 1, exon junction complex associated factor	protein-coding
221760	chr8	127799601	127800600	+	0	NA	intron (NR_003367, intron 1 of 8)	MIRb|SINE|MIR	4138	NR_031609	100302185		NR_031609	ENSG00000283710	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
195391	chr6	36758451	36758550	+	0	NA	intron (NM_001376889, intron 13 of 21)	AluJo|SINE|Alu	-1091	NM_001314018	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
84798	chr16	31062301	31062700	+	0	NA	intron (NM_001172670, intron 2 of 2)	AluY|SINE|Alu	2588	NM_001172669	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
122959	chr19	50772421	50772680	+	0	NA	TTS (NM_001506)	TTS (NM_001506)	2086	NM_001506	2854		NM_001506	ENSG00000142511	GPR32	DRV1|RVDR1	G protein-coupled receptor 32	protein-coding
148457	chr20	64017221	64017480	+	0	NA	intron (NM_012469, intron 12 of 20)	AluSx|SINE|Alu	-16377	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
194830	chr6	34391451	34391900	+	0	NA	intron (NM_001202470, intron 5 of 8)	intron (NM_001202470, intron 5 of 8)	994	NM_006703	11165		NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
114187	chr19	11401201	11401580	+	0	NA	intron (NM_001161616, intron 13 of 18)	AluJb|SINE|Alu	-17076	NR_033663	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
130610	chr2	85934021	85934300	+	0	NA	Intergenic	AluJb|SINE|Alu	44880	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
50658	chr12	48817771	48819530	+	0	NA	5' UTR (NM_000725, exon 1 of 13)	5' UTR (NM_000725, exon 1 of 13)	154	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
59547	chr13	27269621	27269880	+	0	NA	Intergenic	Intergenic	-1080	NM_206827	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
230116	chr9	127706651	127706950	+	0	NA	promoter-TSS (NR_145961)	promoter-TSS (NR_145961)	-188	NM_001012502	286207		NM_001012502	ENSG00000160401	CFAP157	C9orf117	cilia and flagella associated protein 157	protein-coding
124906	chr2	8481371	8482530	+	0	NA	Intergenic	Intergenic	101842	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
195846	chr6	41429071	41429380	+	0	NA	Intergenic	Intergenic	-73219	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
193105	chr6	28934471	28934850	+	0	NA	Intergenic	AluSz|SINE|Alu	-9124	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
96142	chr17	39668201	39669330	+	0	NA	intron (NM_002686, intron 1 of 2)	intron (NM_002686, intron 1 of 2)	312	NM_002686	5409		NM_002686	ENSG00000141744	PNMT	PENT|PNMTase	phenylethanolamine N-methyltransferase	protein-coding
133854	chr2	128313451	128314680	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	4803	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
14517	chr1	144838351	144838850	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	120429	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
41284	chr11	65856721	65857400	+	0	NA	intron (NM_005507, intron 1 of 3)	CpG	1120	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
22650	chr1	223748121	223748380	+	0	NA	intron (NM_001748, intron 5 of 20)	intron (NM_001748, intron 5 of 20)	35711	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
185289	chr5	126499851	126500230	+	0	NA	Intergenic	LTR50|LTR|ERVL	34890	NM_001146322	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
97005	chr17	42291801	42292850	+	0	NA	intron (NM_003152, intron 5 of 19)	AluY|SINE|Alu	4269	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
217517	chr8	29228371	29229810	+	0	NA	intron (NM_015254, intron 2 of 39)	(A)n|Simple_repeat|Simple_repeat	33980	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
236094	chrX	56797871	56798450	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-60576	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
160966	chr3	37023871	37024400	+	0	NA	intron (NM_001354615, intron 10 of 17)	(AT)n|Simple_repeat|Simple_repeat	30617	NM_000249	4292		NM_000249	ENSG00000076242	MLH1	COCA2|FCC2|HNPCC|HNPCC2|LYNCH2|MLH-1|MMRCS1|hMLH1	mutL homolog 1	protein-coding
128178	chr2	53770821	53771080	+	0	NA	intron (NM_001346127, intron 1 of 2)	intron (NM_001346127, intron 1 of 2)	3146	NM_001008708	494143		NM_001008708	ENSG00000143942	CHAC2	GCG1	ChaC glutathione specific gamma-glutamylcyclotransferase 2	protein-coding
124656	chr2	2689721	2690180	+	0	NA	Intergenic	Intergenic	-358675	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
91230	chr17	3935021	3935700	+	0	NA	intron (NM_174953, intron 16 of 22)	MLT1K|LTR|ERVL-MaLR	-18895	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
224150	chr9	4851601	4851950	+	0	NA	intron (NM_001286700, intron 7 of 7)	intron (NM_001286700, intron 7 of 7)	1478	NR_029836	406894		NR_029836	ENSG00000199065	MIR101-2	MIRN101-2|mir-101-2	microRNA 101-2	ncRNA
137003	chr2	190643751	190643850	+	0	NA	Intergenic	AluJb|SINE|Alu	-5095	NM_001321313	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
2435	chr1	9610201	9610400	+	0	NA	intron (NM_001130924, intron 8 of 10)	intron (NM_001130924, intron 8 of 10)	21389	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
206299	chr7	30146401	30146600	+	0	NA	intron (NM_152793, intron 2 of 2)	intron (NM_152793, intron 2 of 2)	11514	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
54210	chr12	79911871	79912030	+	0	NA	intron (NM_001143885, intron 2 of 25)	L2b|LINE|L2	1961	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
136297	chr2	174778401	174779480	+	0	NA	Intergenic	Intergenic	-14468	NM_000079	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
78226	chr15	90651751	90652250	+	0	NA	intron (NR_120372, intron 2 of 3)	AluY|SINE|Alu	-8234	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
217491	chr8	29035301	29035750	+	0	NA	intron (NM_001324391, intron 6 of 10)	intron (NM_001324391, intron 6 of 10)	144211	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
75203	chr15	64827951	64828130	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2393	NM_001286497	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
179729	chr5	210871	211030	+	0	NA	intron (NM_145265, intron 2 of 2)	CpG	7203	NM_145265	133957		NM_145265	ENSG00000164366	CCDC127	-	coiled-coil domain containing 127	protein-coding
120348	chr19	43579851	43581500	+	0	NA	promoter-TSS (NM_001321124)	promoter-TSS (NM_001321124)	69	NM_001321124	390940		NM_001193621	ENSG00000234465	PINLYP	-	phospholipase A2 inhibitor and LY6/PLAUR domain containing	protein-coding
65007	chr14	38210401	38210600	+	0	NA	exon (NM_001049, exon 3 of 3)	exon (NM_001049, exon 3 of 3)	2596	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
169243	chr3	157149271	157149680	+	0	NA	intron (NM_001308185, intron 9 of 10)	intron (NM_001308185, intron 9 of 10)	10672	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
84433	chr16	30390271	30390950	+	0	NA	intron (NM_001214907, intron 1 of 1)	AluY|SINE|Alu	-4810	NM_001214909	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
26146	chr10	13862621	13862880	+	0	NA	intron (NM_018027, intron 2 of 24)	intron (NM_018027, intron 2 of 24)	109146	NM_001318337	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
19240	chr1	172646721	172647630	+	0	NA	Intergenic	Intergenic	-11833	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
169327	chr3	159884801	159885100	+	0	NA	intron (NM_001197107, intron 3 of 7)	intron (NM_001197107, intron 3 of 7)	45089	NM_001197109	29970		NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
176077	chr4	82861771	82861930	+	0	NA	intron (NM_001318120, intron 15 of 28)	intron (NM_001318120, intron 15 of 28)	29303	NM_001077207	22872		NM_014933	ENSG00000138674	SEC31A	ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1	SEC31 homolog A, COPII coat complex component	protein-coding
161278	chr3	39284271	39284830	+	0	NA	Intergenic	Intergenic	-2815	NM_001171174	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
320	chr1	980801	981000	+	0	NA	exon (NM_001369897, exon 2 of 4)	exon (NM_001369897, exon 2 of 4)	273	NM_001369898	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
98129	chr17	45894021	45894780	+	0	NA	promoter-TSS (NM_001203251)	promoter-TSS (NM_001203251)	18	NM_001123066	4137		NM_005910	ENSG00000186868	MAPT	DDPAC|FTDP-17|MAPTL|MSTD|MTBT1|MTBT2|PPND|PPP1R103|TAU|Tau-PHF6|tau-40	microtubule associated protein tau	protein-coding
198914	chr6	110063701	110064100	+	0	NA	Intergenic	Intergenic	85589	NM_005284	2830		NM_005284	ENSG00000146360	GPR6	-	G protein-coupled receptor 6	protein-coding
126453	chr2	28271751	28271850	+	0	NA	intron (NM_199193, intron 11 of 13)	intron (NM_199193, intron 11 of 13)	38659	NR_038319	100505716		NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
173019	chr4	4461821	4462680	+	0	NA	promoter-TSS (NM_001346300)	promoter-TSS (NM_001346300)	-278	NM_001346300	53407		NM_016930	ENSG00000168818	STX18	Ufe1	syntaxin 18	protein-coding
194054	chr6	31853921	31854630	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	8546	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
38416	chr11	45073471	45073930	+	0	NA	Intergenic	Intergenic	-20459	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
2762	chr1	10691001	10691200	+	0	NA	intron (NM_017766, intron 4 of 15)	(CCTC)n|Simple_repeat|Simple_repeat	105546	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
81581	chr16	10181601	10181800	+	0	NA	intron (NM_000833, intron 2 of 13)	CpG	367	NM_001134408	2903		NM_000833	ENSG00000183454	GRIN2A	EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A	glutamate ionotropic receptor NMDA type subunit 2A	protein-coding
85589	chr16	53504601	53505500	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-1746	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
79107	chr16	200501	200700	+	0	NA	intron (NM_018032, intron 5 of 8)	AluJo|SINE|Alu	20141	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
229292	chr9	120792821	120794480	+	0	NA	promoter-TSS (NM_012164)	promoter-TSS (NM_012164)	154	NR_027442								
191984	chr6	16162021	16162480	+	0	NA	Intergenic	Intergenic	20694	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
103555	chr17	78670151	78670580	+	0	NA	Intergenic	Intergenic	-38308	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
146815	chr20	51372311	51372900	+	0	NA	Intergenic	Intergenic	80372	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
202103	chr6	154734001	154734980	+	0	NA	intron (NM_001286199, intron 2 of 20)	intron (NM_001286199, intron 2 of 20)	1074	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
200780	chr6	137875701	137876080	+	0	NA	intron (NM_006290, intron 4 of 8)	intron (NM_006290, intron 4 of 8)	-7657	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
217760	chr8	31031051	31031430	+	0	NA	3' UTR (NM_013357, exon 1 of 1)	3' UTR (NM_013357, exon 1 of 1)	1561	NM_013357	29942		NM_013357	ENSG00000172733	PURG	PURG-A|PURG-B|PURGA|PURGB	purine rich element binding protein G	protein-coding
173313	chr4	7335821	7336100	+	0	NA	intron (NM_020777, intron 1 of 26)	intron (NM_020777, intron 1 of 26)	25510	NR_039961	100616471		NR_039961	ENSG00000264658	MIR4798	-	microRNA 4798	ncRNA
230733	chr9	128825971	128827530	+	0	NA	intron (NM_016390, intron 4 of 11)	AluJb|SINE|Alu	3044	NM_016390	51490		NM_016390	ENSG00000198917	SPOUT1	C9orf114|CENP-32|CENP32|HSPC109	SPOUT domain containing methyltransferase 1	protein-coding
105463	chr17	83053271	83053430	+	0	NA	Intergenic	Intergenic	-1540	NM_001009905	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
152088	chr22	19764221	19764680	+	0	NA	intron (NM_080646, intron 5 of 8)	intron (NM_080646, intron 5 of 8)	3672	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
32104	chr10	101193141	101193250	+	0	NA	intron (NR_120620, intron 5 of 5)	intron (NR_120620, intron 5 of 5)	16873	NR_120620	101927396		NR_120620	ENSG00000237579	LINC01514	-	long intergenic non-protein coding RNA 1514	ncRNA
186607	chr5	138522821	138523600	+	0	NA	intron (NM_004730, intron 2 of 10)	AluSc|SINE|Alu	18501	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
104065	chr17	80203621	80203880	+	0	NA	intron (NM_001366385, intron 18 of 23)	intron (NM_001366385, intron 18 of 23)	15950	NM_052819	79092		NM_024110	ENSG00000141527	CARD14	BIMP2|CARMA2|PRP|PSORS2|PSS1	caspase recruitment domain family member 14	protein-coding
229127	chr9	114467171	114467330	+	0	NA	intron (NM_015404, intron 2 of 11)	L2c|LINE|L2	35965	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
169570	chr3	170363371	170363530	+	0	NA	intron (NM_001145098, intron 3 of 7)	intron (NM_001145098, intron 3 of 7)	3827	NM_001248008	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
166773	chr3	122419171	122419630	+	0	NA	intron (NR_125405, intron 1 of 2)	AluSq10|SINE|Alu	3194	NR_125405	102723582		NR_125405	ENSG00000272758	WDR5B-DT	-	WDR5B divergent transcript	ncRNA
93160	chr17	17774351	17774950	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	4879	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
93408	chr17	18371751	18372050	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-5878	NM_001145127	645027		NM_001145127	ENSG00000214860	EVPLL	-	envoplakin like	protein-coding
116439	chr19	18023521	18024580	+	0	NA	Intergenic	Intergenic	15880	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
107231	chr18	36826201	36826400	+	0	NA	intron (NM_001271952, intron 1 of 6)	AluJr4|SINE|Alu	2702	NM_001271953	25941		NM_015476	ENSG00000134779	TPGS2	C18orf10|HMFN0601|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
52827	chr12	57030921	57031480	+	0	NA	intron (NM_005379, intron 22 of 27)	intron (NM_005379, intron 22 of 27)	-14671	NR_135164	6866		NM_013251	ENSG00000166863	TAC3	HH10|LncZBTB39|NK3|NKB|NKNB|PRO1155|ZNEUROK1	tachykinin precursor 3	protein-coding
1666	chr1	3898751	3898930	+	0	NA	intron (NM_207356, intron 1 of 3)	L1M4b|LINE|L1	1432	NM_207356	339448		NM_207356	ENSG00000198912	C1orf174	-	chromosome 1 open reading frame 174	protein-coding
219945	chr8	89218421	89218830	+	0	NA	Intergenic	L1PA3|LINE|L1	539086	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
193564	chr6	30640751	30641050	+	0	NA	intron (NM_001318763, intron 8 of 9).6	intron (NM_001318763, intron 8 of 9).6	-6233	NM_001109938	221545		NM_145029	ENSG00000204564	C6orf136	-	chromosome 6 open reading frame 136	protein-coding
147434	chr20	58903551	58904000	+	0	NA	exon (NM_001309840, exon 5 of 13)	exon (NM_001309840, exon 5 of 13)	11612	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
136122	chr2	173952401	173953380	+	0	NA	intron (NM_001172712, intron 4 of 6)	L1MB7|LINE|L1	10990	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
148622	chr21	5556121	5556380	+	0	NA	intron (NM_001322044, intron 1 of 2).2	L1M3a|LINE|L1	2613	NM_001322044	102724219		NM_001322044		LINC03104	-	long intergenic non-protein coding RNA 3104	ncRNA
9632	chr1	52530871	52531030	+	0	NA	intron (NM_015269, intron 1 of 29)	AluJb|SINE|Alu	22140	NM_015269	23318		NM_015269	ENSG00000134744	TUT4	PAPD3|TENT3A|ZCCHC11	terminal uridylyl transferase 4	protein-coding
186957	chr5	139661201	139661980	+	0	NA	intron (NM_001317207, intron 1 of 2)	intron (NM_001317207, intron 1 of 2)	2035	NM_001317206	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
232863	chr9	136802521	136804200	+	0	NA	TTS (NR_024580)	TTS (NR_024580)	-4588	NM_024718	55684		NM_017995	ENSG00000196642	RABL6	C9orf86|PARF|RBEL1|pp8875	RAB, member RAS oncogene family like 6	protein-coding
29516	chr10	70738671	70738830	+	0	NA	intron (NM_139155, intron 10 of 21)	MIRb|SINE|MIR	43616	NR_134534	219793		NM_152710	ENSG00000166220	TBATA	C10orf27|SPATIAL	thymus, brain and testes associated	protein-coding
68340	chr14	77607921	77608780	+	0	NA	intron (NM_004863, intron 1 of 11)	intron (NM_004863, intron 1 of 11)	8287	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
177556	chr4	119211851	119213580	+	0	NA	promoter-TSS (NM_019050)	promoter-TSS (NM_019050)	2	NM_001371399	54532		NM_019050	ENSG00000145390	USP53	PFIC7	ubiquitin specific peptidase 53	protein-coding
93195	chr17	17812001	17813330	+	0	NA	TTS (NR_106835)	TTS (NR_106835)	880	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
163784	chr3	52392121	52392380	+	0	NA	intron (NM_015512, intron 63 of 77)	intron (NM_015512, intron 63 of 77)	17758	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
87424	chr16	70685371	70686550	+	0	NA	promoter-TSS (NM_138383)	promoter-TSS (NM_138383)	93	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
49649	chr12	28525021	28525280	+	0	NA	intron (NM_001352086, intron 15 of 15)	L1PB1|LINE|L1	-334412	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
17479	chr1	156716471	156716630	+	0	NA	Intergenic	AluSp|SINE|Alu	-10734	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
69758	chr14	99118001	99118600	+	0	NA	Intergenic	CpG	153897	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
57064	chr12	120959551	120960480	+	0	NA	Intergenic	MER77|LTR|ERVL	12277	NR_024345	283460		NR_024345	ENSG00000241388	HNF1A-AS1	C12orf27|HAS1|HASTER|NCRNA00262	HNF1A antisense RNA 1	ncRNA
166674	chr3	120147021	120147480	+	0	NA	Intergenic	Intergenic	-52803	NM_001146156	2932		NM_002093	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding
108536	chr18	74476201	74476400	+	0	NA	Intergenic	Intergenic	-18992	NM_001044369	125704		NM_001044369	ENSG00000187773	DIPK1C	C18orf51|FAM69C|FNCAD	divergent protein kinase domain 1C	protein-coding
7528	chr1	34852451	34853500	+	0	NA	3' UTR (NM_001320261, exon 2 of 2)	3' UTR (NM_001320261, exon 2 of 2)	6070	NM_001164824	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
159115	chr3	12587271	12587430	+	0	NA	intron (NR_148942, intron 13 of 16)	intron (NR_148942, intron 13 of 16)	-26351	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
11857	chr1	92993371	92993530	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-31928	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
119195	chr19	39434271	39434600	+	0	NA	intron (NM_001321111, intron 2 of 4)	L2b|LINE|L2	1514	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
108811	chr18	78638751	78639050	+	0	NA	Intergenic	(CACACCA)n|Simple_repeat|Simple_repeat	-341375	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
122812	chr19	50383221	50385480	+	0	NA	promoter-TSS (NM_001256849)	promoter-TSS (NM_001256849)	3	NR_046402	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
66776	chr14	64554101	64554500	+	0	NA	intron (NM_172365, intron 3 of 11)	AluSp|SINE|Alu	4339	NM_172365	145376		NM_172365	ENSG00000165807	PPP1R36	C14orf50	protein phosphatase 1 regulatory subunit 36	protein-coding
230634	chr9	128654351	128654930	+	0	NA	intron (NM_052844, intron 1 of 8)	FRAM|SINE|Alu	2210	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
99388	chr17	49975351	49975650	+	0	NA	TTS (NM_001934)	TTS (NM_001934)	2734	NM_001934	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
98097	chr17	45603121	45603780	+	0	NA	Intergenic	AluJr|SINE|Alu	-1588	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
207307	chr7	44024701	44025200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5756	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
163683	chr3	52242651	52242950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2959	NM_144641	132160		NM_144641	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein-coding
160998	chr3	37262901	37263700	+	0	NA	intron (NM_002078, intron 2 of 23)	MER107|DNA|hAT-Charlie	-19105	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
137309	chr2	195664601	195665100	+	0	NA	intron (NM_020342, intron 1 of 9)	intron (NM_020342, intron 1 of 9)	7624	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
164350	chr3	58033071	58033730	+	0	NA	intron (NM_001164319, intron 1 of 44)	AluSx|SINE|Alu	24978	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
99512	chr17	50269801	50270780	+	0	NA	Intergenic	Intergenic	-1116	NM_001168215	162461		NM_153229	ENSG00000167105	TMEM92	-	transmembrane protein 92	protein-coding
153876	chr22	30269551	30270230	+	0	NA	Intergenic	AluSx|SINE|Alu	-3039	NM_020530	5008		NM_020530	ENSG00000099985	OSM	-	oncostatin M	protein-coding
16089	chr1	153543071	153543230	+	0	NA	TTS (NM_019554)	TTS (NM_019554)	-1341	NM_002962	6276		NM_002962	ENSG00000196420	S100A5	S100D	S100 calcium binding protein A5	protein-coding
142208	chr20	3043871	3044030	+	0	NA	intron (NM_001310220, intron 1 of 3)	intron (NM_001310220, intron 1 of 3)	328	NM_178331	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
76787	chr15	77016671	77016830	+	0	NA	intron (NM_001321136, intron 2 of 15)	intron (NM_001321136, intron 2 of 15)	21624	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
53973	chr12	74539901	74540100	+	0	NA	3' UTR (NM_001136262, exon 1 of 1)	3' UTR (NM_001136262, exon 1 of 1)	2165	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
101881	chr17	74324801	74325000	+	0	NA	Intergenic	AluJo|SINE|Alu	-1326	NM_153209	124602		NM_153209	ENSG00000196169	KIF19	KIF19A	kinesin family member 19	protein-coding
154923	chr22	37207751	37208580	+	0	NA	intron (NM_001051, intron 1 of 1)	intron (NM_001051, intron 1 of 1)	2524	NM_001278687	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
90251	chr17	841451	841630	+	0	NA	intron (NM_022463, intron 1 of 7)	CpG	22571	NM_001205319	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
56117	chr12	110747071	110747680	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4484	NM_002710	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
216108	chr8	11198571	11198730	+	0	NA	intron (NR_138152, intron 1 of 3)	intron (NR_138152, intron 1 of 3)	2716	NR_138152	286046		NM_173683	ENSG00000171044	XKR6	C8orf21|C8orf5|C8orf7|XRG6	XK related 6	protein-coding
55344	chr12	103965221	103966480	+	0	NA	promoter-TSS (NM_003211)	promoter-TSS (NM_003211)	-22	NM_003211	6996		NM_003211	ENSG00000139372	TDG	hTDG	thymine DNA glycosylase	protein-coding
178251	chr4	143518121	143518730	+	0	NA	intron (NM_003601, intron 2 of 23)	intron (NM_003601, intron 2 of 23)	-3588	NR_104027	100128055		NR_104027	ENSG00000245112	SMARCA5-AS1	-	SMARCA5 antisense RNA 1	ncRNA
30352	chr10	77834551	77835080	+	0	NA	intron (NM_004747, intron 8 of 31).2	intron (NM_004747, intron 8 of 31).2	91940	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
145107	chr20	38751051	38751750	+	0	NA	intron (NM_024855, intron 2 of 8)	intron (NM_024855, intron 2 of 8)	2940	NM_024855	79913		NM_024855	ENSG00000101442	ACTR5	Arp5|INO80M	actin related protein 5	protein-coding
56319	chr12	112747521	112747780	+	0	NA	intron (NM_001347952, intron 1 of 21)	intron (NM_001347952, intron 1 of 21)	-43888	NM_001347953	22895		NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding
66256	chr14	61359001	61359930	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	38022	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
226577	chr9	72635221	72635480	+	0	NA	intron (NM_138691, intron 4 of 23)	MER21C|LTR|ERVL	113742	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
111531	chr19	4021971	4022450	+	0	NA	intron (NM_015897, intron 2 of 10)	L1M5|LINE|L1	14474	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
201030	chr6	141566251	141566580	+	0	NA	Intergenic	L1PA2|LINE|L1	-566744	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
108317	chr18	63420151	63420450	+	0	NA	intron (NM_004869, intron 1 of 10)	AluSx1|SINE|Alu	2176	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
223519	chr8	144107001	144107300	+	0	NA	promoter-TSS (NM_001316309)	promoter-TSS (NM_001316309)	-589	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
238319	chrX	149521151	149522830	+	0	NA	Intergenic	Intergenic	-16684	NM_001166550	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
67453	chr14	70812301	70812500	+	0	NA	Intergenic	Intergenic	-2887	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
15358	chr1	150050601	150050880	+	0	NA	Intergenic	Intergenic	-16642	NM_001279353	11311		NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
151896	chr22	18902471	18903180	+	0	NA	Intergenic	Intergenic	-3495	NM_001368242	8214		NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
111816	chr19	4493421	4493680	+	0	NA	intron (NM_032631, intron 6 of 15)	intron (NM_032631, intron 6 of 15)	19596	NM_001348169	84717		NM_032631	ENSG00000167674	HDGFL2	HDGF-2|HDGF2|HDGFRP2|HRP-2|HRP2	HDGF like 2	protein-coding
42660	chr11	72521901	72522180	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-48616	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
166120	chr3	111284451	111284750	+	0	NA	Intergenic	Intergenic	212784	NM_001243288	25945		NM_015480	ENSG00000177707	NECTIN3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3	nectin cell adhesion molecule 3	protein-coding
69278	chr14	93070951	93071250	+	0	NA	non-coding (NR_002808, exon 1 of 1)	non-coding (NR_002808, exon 1 of 1)	3648	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
57998	chr12	124335871	124336030	+	0	NA	intron (NM_001077261, intron 39 of 47)	intron (NM_001077261, intron 39 of 47)	1292	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
101387	chr17	67358271	67359150	+	0	NA	intron (NM_002816, intron 1 of 10)	Charlie19a|DNA|hAT-Charlie	7867	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
231389	chr9	130712541	130713930	+	0	NA	promoter-TSS (NM_007313)	promoter-TSS (NM_007313)	-646	NM_007313	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
64714	chr14	34212651	34212950	+	0	NA	Intergenic	Intergenic	249440	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
139572	chr2	224943221	224944030	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	3424	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
95933	chr17	38943721	38944150	+	0	NA	intron (NM_001008777, intron 7 of 10)	AluSz6|SINE|Alu	18767	NR_038847	100505576		NM_001414697	ENSG00000263874	LASP1NB	LINC00672	LASP1 neighbor	protein-coding
209768	chr7	87222071	87222230	+	0	NA	Intergenic	Intergenic	-1563	NM_001329473	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
94048	chr17	27330251	27330630	+	0	NA	Intergenic	MER4B|LTR|ERV1	36326	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
90771	chr17	2063101	2063800	+	0	NA	TTS (NM_006497)	TTS (NM_006497)	7140	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
186365	chr5	134878401	134878600	+	0	NA	intron (NM_024715, intron 1 of 4)	intron (NM_024715, intron 1 of 4)	4129	NM_024715	79770		NM_024715	ENSG00000113621	TXNDC15	BUG|C5orf14|MKS14|UNQ335	thioredoxin domain containing 15	protein-coding
207801	chr7	50274501	50274850	+	0	NA	Intergenic	Intergenic	-29389	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
31513	chr10	96718271	96718650	+	0	NA	intron (NM_152309, intron 1 of 16)	intron (NM_152309, intron 1 of 16)	2054	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
64675	chr14	32077901	32078800	+	0	NA	intron (NM_001030055, intron 1 of 6)	intron (NM_001030055, intron 1 of 6)	1046	NM_001173	394		NM_001173	ENSG00000100852	ARHGAP5	GFI2|RhoGAP5|p190-B|p190BRhoGAP	Rho GTPase activating protein 5	protein-coding
42695	chr11	72656251	72656550	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	12664	NM_001146209	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
118886	chr19	38682571	38682730	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	35001	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
210685	chr7	100565121	100565600	+	0	NA	3' UTR (NM_006076, exon 12 of 12)	3' UTR (NM_006076, exon 12 of 12)	8540	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
77812	chr15	88605451	88606030	+	0	NA	promoter-TSS (NR_120370)	promoter-TSS (NR_120370)	-630	NR_120370	101929743		NR_120369	ENSG00000249487	LINC01586	-	long intergenic non-protein coding RNA 1586	ncRNA
24293	chr1	236533871	236534850	+	0	NA	intron (NM_201544, intron 2 of 9)	intron (NM_201544, intron 2 of 9)	-9852	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
207665	chr7	45087471	45088080	+	0	NA	intron (NM_001146334, intron 1 of 7)	intron (NM_001146334, intron 1 of 7)	1194	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
88969	chr16	87861351	87861650	+	0	NA	intron (NM_003486, intron 1 of 9)	MIR1_Amn|SINE|MIR	7604	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
17600	chr1	156891071	156891230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2568	NM_001353682	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
4436	chr1	21294101	21295500	+	0	NA	intron (NR_038404, intron 2 of 2)	intron (NR_038404, intron 2 of 2)	1510	NR_038404	100506801		NR_038404	ENSG00000231105	ECE1-AS1	-	ECE1 antisense RNA 1	ncRNA
192477	chr6	24937971	24938550	+	0	NA	intron (NM_001286446, intron 1 of 13)	MLT1C|LTR|ERVL-MaLR	-2300	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
71900	chr15	22664201	22665400	+	0	NA	promoter-TSS (NR_003521)	promoter-TSS (NR_003521)	61	NR_003521	339005		NR_003521		WHAMMP3	WHAMML1|WHDC1L1	WHAMM pseudogene 3	pseudo
134352	chr2	136129051	136130450	+	0	NA	Intergenic	Intergenic	-11601	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
36996	chr11	11899471	11900130	+	0	NA	intron (NM_001372100, intron 6 of 28)	L2a|LINE|L2	57828	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
151437	chr21	46142251	46142880	+	0	NA	intron (NM_206965, intron 10 of 13)	LTR12|LTR|ERV1	-8810	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
89184	chr16	88561871	88562550	+	0	NA	promoter-TSS (NR_146877)	promoter-TSS (NR_146877)	-227	NR_146877	400555		NM_001001682		ZC3H18-AS1	C16orf85|LINC00859	ZC3H18 antisense RNA 1 (head to head)	ncRNA
200852	chr6	138455101	138455700	+	0	NA	intron (NM_020464, intron 3 of 6)	intron (NM_020464, intron 3 of 6)	-20106	NR_036099	100423001		NR_036099	ENSG00000266555	MIR3145	mir-3145	microRNA 3145	ncRNA
163266	chr3	50298201	50300730	+	0	NA	promoter-TSS (NM_003549)	promoter-TSS (NM_003549)	-60	NM_001200030	8372		NM_003549	ENSG00000186792	HYAL3	HYAL-3|LUCA-3|LUCA3	hyaluronidase 3	protein-coding
90948	chr17	2634171	2634730	+	0	NA	intron (NM_000430, intron 1 of 10)	intron (NM_000430, intron 1 of 10)	40796	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
210418	chr7	100051101	100051800	+	0	NA	intron (NM_145914, intron 1 of 3)	AluY|SINE|Alu	1656	NM_001362780	7589		NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
195879	chr6	41637301	41637700	+	0	NA	promoter-TSS (NM_005586)	promoter-TSS (NM_005586)	482	NM_001300804	4188		NM_005586	ENSG00000112559	MDFI	I-MF|I-mfa	MyoD family inhibitor	protein-coding
75726	chr15	68208401	68209000	+	0	NA	intron (NM_017882, intron 6 of 6)	Charlie8|DNA|hAT-Charlie	-2590	NM_001286694	91860		NM_033429	ENSG00000129007	CALML4	NY-BR-20	calmodulin like 4	protein-coding
172756	chr4	2852521	2853200	+	0	NA	intron (NM_001286645, intron 1 of 17)	AluJr|SINE|Alu	8710	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
139465	chr2	223944701	223945980	+	0	NA	promoter-TSS (NM_020830)	promoter-TSS (NM_020830)	-5	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
5160	chr1	24921051	24921450	+	0	NA	intron (NM_001031680, intron 3 of 5)	intron (NM_001031680, intron 3 of 5)	-1834	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
78703	chr15	97981201	97981400	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	20597	NM_183376	91947		NM_183376	ENSG00000140450	ARRDC4	-	arrestin domain containing 4	protein-coding
12269	chr1	100467501	100468100	+	0	NA	intron (NM_001319210, intron 9 of 16)	intron (NM_001319210, intron 9 of 16)	-70339	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
212689	chr7	129682951	129683250	+	0	NA	intron (NM_001293163, intron 4 of 11)	AluSz|SINE|Alu	53022	NM_001040110	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
83920	chr16	29023351	29024380	+	0	NA	Intergenic	MIRb|SINE|MIR	38813	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
169821	chr3	177133401	177134100	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluSz|SINE|Alu	62728	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
148400	chr20	63934821	63935080	+	0	NA	3' UTR (NM_025219, exon 5 of 5)	3' UTR (NM_025219, exon 5 of 5)	6594	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
62763	chr13	108217771	108219080	+	0	NA	promoter-TSS (NM_001352600)	promoter-TSS (NM_001352600)	33	NM_032859	84945		NM_032859	ENSG00000139826	ABHD13	BEM46L1|C13orf6|bA153I24.2	abhydrolase domain containing 13	protein-coding
173160	chr4	6686771	6686930	+	0	NA	TTS (NR_147207)	TTS (NR_147207)	3669	NR_147207	339988		NR_147207	ENSG00000246526	LINC02481	LINC002481	long intergenic non-protein coding RNA 2481	ncRNA
79309	chr16	556671	557980	+	0	NA	Intergenic	Intergenic	-3069	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
208287	chr7	66030901	66031200	+	0	NA	Intergenic	Intergenic	-44769	NM_001024943	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
18667	chr1	167120951	167121050	+	0	NA	intron (NM_001080426, intron 5 of 5)	intron (NM_001080426, intron 5 of 5)	26925	NM_001080426	92235		NM_001080426	ENSG00000198842	STYXL2	DUSP27	serine/threonine/tyrosine interacting like 2	protein-coding
138289	chr2	203713401	203714180	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	7151	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
407	chr1	1066371	1067150	+	0	NA	TTS (NR_148960)	TTS (NR_148960)	2577	NR_168433	105378948		NR_168432		LOC105378948	-	uncharacterized LOC105378948	ncRNA
175991	chr4	81650651	81650950	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-178893	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
236406	chrX	71181421	71182880	+	0	NA	Intergenic	CpG	-33062	NM_001097642	2705		NM_000166	ENSG00000169562	GJB1	CMTX|CMTX1|CX32	gap junction protein beta 1	protein-coding
45442	chr11	118438301	118439050	+	0	NA	intron (NM_001197104, intron 1 of 35)	intron (NM_001197104, intron 1 of 35)	2183	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
153849	chr22	30183721	30184180	+	0	NA	Intergenic	X6A_LINE|LINE|CR1	-55244	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
212560	chr7	128879801	128880450	+	0	NA	intron (NM_001366122, intron 34 of 39)	intron (NM_001366122, intron 34 of 39)	13795	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
102061	chr17	74913701	74913950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	9430	NM_173477	124590		NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	USH1 protein network component sans	protein-coding
103632	chr17	78747721	78749430	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-11673	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
128062	chr2	47801401	47801800	+	0	NA	intron (NM_000179, intron 4 of 9)	AluJb|SINE|Alu	17645	NM_001281494	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
64222	chr14	23070171	23070330	+	0	NA	intron (NM_014977, intron 8 of 18)	intron (NM_014977, intron 8 of 18)	1319	NM_001164817	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
234704	chrX	20453951	20454450	+	0	NA	Intergenic	Intergenic	-187291	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
163298	chr3	50339001	50339740	+	0	NA	intron (NM_170714, intron 1 of 5)	AluSx1|SINE|Alu	-1118	NM_170712	11186		NM_007182	ENSG00000068028	RASSF1	123F2|NORE2A|RASSF1A|RDA32|REH3P21	Ras association domain family member 1	protein-coding
98327	chr17	46263221	46263480	+	0	NA	Intergenic	AluSz|SINE|Alu	-31781	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
196993	chr6	53294021	53294650	+	0	NA	exon (NM_001242831, exon 3 of 3)	exon (NM_001242831, exon 3 of 3)	17342	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
158401	chr22	50520051	50520300	+	0	NA	TTS (NM_014551)	TTS (NM_014551)	5423	NM_005138	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
201217	chr6	143545121	143545500	+	0	NA	Intergenic	Intergenic	16741	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
180894	chr5	34178371	34179100	+	0	NA	intron (NR_146599, intron 4 of 11)	intron (NR_146599, intron 4 of 11)	-10846	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
131219	chr2	95115121	95115730	+	0	NA	intron (NR_136152, intron 2 of 10)	intron (NR_136152, intron 2 of 10)	6132	NM_001321997	64969		NM_031902	ENSG00000144029	MRPS5	MRP-S5|S5mt|uS5m	mitochondrial ribosomal protein S5	protein-coding
194440	chr6	33162671	33163030	+	0	NA	3' UTR (NM_080679, exon 63 of 63).6	3' UTR (NM_080679, exon 63 of 63).6	19526	NR_138084	414768		NR_138084		HCG24	-	HLA complex group 24	ncRNA
187088	chr5	140244271	140245100	+	0	NA	TTS (NM_002622)	TTS (NM_002622)	58416	NM_002622	5201		NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
160612	chr3	31461901	31463530	+	0	NA	Intergenic	LTR84b|LTR|ERVL	-70210	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
226320	chr9	69021871	69022030	+	0	NA	Intergenic	LTR8|LTR|ERV1	-7837	NM_002732	5568		NM_002732	ENSG00000165059	PRKACG	BDPLT19|KAPG|PKACg	protein kinase cAMP-activated catalytic subunit gamma	protein-coding
167911	chr3	136163451	136164350	+	0	NA	intron (NM_018133, intron 1 of 1)	THE1C|LTR|ERVL-MaLR	30568	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
118507	chr19	35953101	35953980	+	0	NA	intron (NR_136525, intron 1 of 4)	AluSz|SINE|Alu	6425	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
43227	chr11	75443651	75443950	+	0	NA	intron (NM_030792, intron 10 of 16)	MER91B|DNA|hAT-Tip100	8527	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
143526	chr20	31557051	31558700	+	0	NA	intron (NM_178580, intron 8 of 12)	AluSq2|SINE|Alu	15388	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
234953	chrX	38815971	38816550	+	0	NA	Intergenic	MER57B2|LTR|ERV1	-12377	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
73489	chr15	43745671	43747220	+	0	NA	promoter-TSS (NR_002318)	promoter-TSS (NR_002318)	7	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
238013	chrX	135003901	135004680	+	0	NA	Intergenic	Intergenic	13299	NM_001163438	644538		NM_001163438	ENSG00000184785	SMIM10	CXorf69	small integral membrane protein 10	protein-coding
190778	chr6	524951	525130	+	0	NA	intron (NM_018303, intron 23 of 27)	L1MEb|LINE|L1	131924	NM_148959	135458		NM_148959	ENSG00000188996	HUS1B	-	HUS1 checkpoint clamp component B	protein-coding
151868	chr22	18612221	18612500	+	0	NA	promoter-TSS (NM_015672)	promoter-TSS (NM_015672)	-441	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
3174	chr1	13690651	13690750	+	0	NA	Intergenic	AluY|SINE|Alu	-9488	NM_001135610	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
101014	chr17	64736621	64737150	+	0	NA	Intergenic	Intergenic	-43874	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
15196	chr1	149227901	149228480	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-27044	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
47209	chr12	848501	849000	+	0	NA	intron (NM_018979, intron 4 of 27)	intron (NM_018979, intron 4 of 27)	84326	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
170382	chr3	184777651	184778530	+	0	NA	Intergenic	L2c|LINE|L2	-4935	NR_110043	101928992		NR_110043	ENSG00000229433	LINC02069	-	long intergenic non-protein coding RNA 2069	ncRNA
70897	chr14	103919271	103919430	+	0	NA	intron (NM_004894, intron 1 of 3)	AluSq|SINE|Alu	2179	NM_001127393	9556		NM_004894	ENSG00000156411	ATP5MJ	6.8PL|ATP5MPL|C14orf2|MLQ|MP68|PLPM	ATP synthase membrane subunit j	protein-coding
18378	chr1	161383871	161384230	+	0	NA	Intergenic	Intergenic	-16174	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
40596	chr11	64554671	64555430	+	0	NA	promoter-TSS (NM_018484)	promoter-TSS (NM_018484)	-891	NM_018484	55867		NM_018484	ENSG00000168065	SLC22A11	OAT4|hOAT4	solute carrier family 22 member 11	protein-coding
217336	chr8	27592121	27592700	+	0	NA	Intergenic	CpG	18341	NR_106902	102465508		NR_106902	ENSG00000284280	MIR6843	hsa-mir-6843	microRNA 6843	ncRNA
209796	chr7	87825501	87825700	+	0	NA	intron (NM_138290, intron 11 of 11)	THE1B-int|LTR|ERVL-MaLR	50760	NM_018843	55972		NM_018843	ENSG00000075303	SLC25A40	MCFP	solute carrier family 25 member 40	protein-coding
176226	chr4	84583971	84584130	+	0	NA	intron (NM_001263, intron 1 of 12)	intron (NM_001263, intron 1 of 12)	923	NM_001263	1040		NM_001263	ENSG00000163624	CDS1	CDS 1	CDP-diacylglycerol synthase 1	protein-coding
9609	chr1	52362251	52362730	+	0	NA	intron (NM_032449, intron 3 of 23)	intron (NM_032449, intron 3 of 23)	3715	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
237161	chrX	107549451	107549830	+	0	NA	intron (NM_032428, intron 6 of 15)	intron (NM_032428, intron 6 of 15)	-3819	NR_046750	100874122		NR_046750	ENSG00000227610	FRMPD3-AS1	-	FRMPD3 antisense RNA 1	ncRNA
183428	chr5	78390951	78391250	+	0	NA	intron (NM_004866, intron 2 of 8)	SVA_D|Retroposon|SVA	30483	NM_004866	9522		NM_004866	ENSG00000085365	SCAMP1	SCAMP|SCAMP37	secretory carrier membrane protein 1	protein-coding
86704	chr16	67542371	67543580	+	0	NA	exon (NM_001193522, exon 13 of 22)	exon (NM_001193522, exon 13 of 22)	5513	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
228969	chr9	113518181	113518630	+	0	NA	intron (NM_144488, intron 17 of 25)	MIRc|SINE|MIR	16898	NM_130795	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
108084	chr18	60251551	60251650	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	121175	NM_005912	4160		NM_005912	ENSG00000166603	MC4R	BMIQ20	melanocortin 4 receptor	protein-coding
234603	chrX	19798651	19798950	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	973	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
51683	chr12	53095901	53096100	+	0	NA	Intergenic	Intergenic	-1667	NM_002178	3489		NM_002178	ENSG00000167779	IGFBP6	IBP6	insulin like growth factor binding protein 6	protein-coding
7878	chr1	36420421	36421300	+	0	NA	intron (NM_145047, intron 7 of 9)	intron (NM_145047, intron 7 of 9)	-2282	NR_145725	109616970		NR_145725	ENSG00000201448	SNORA63C	-	small nucleolar RNA, H/ACA box 63C	snoRNA
231083	chr9	129739671	129739830	+	0	NA	exon (NM_004878, exon 3 of 3)	exon (NM_004878, exon 3 of 3)	13292	NM_004878	9536		NM_004878	ENSG00000148344	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
227056	chr9	83979101	83979700	+	0	NA	promoter-TSS (NM_001358294)	promoter-TSS (NM_001358294)	815	NM_031263	3190		NM_002140	ENSG00000165119	HNRNPK	AUKS|CSBP|HNRPK|TUNP	heterogeneous nuclear ribonucleoprotein K	protein-coding
212717	chr7	129798321	129798780	+	0	NA	Intergenic	Intergenic	-23536	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
10644	chr1	70226351	70226650	+	0	NA	intron (NM_001350615, intron 1 of 11)	intron (NM_001350615, intron 1 of 11)	5120	NM_001350613	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
20737	chr1	200925821	200926080	+	0	NA	Intergenic	L1ME1|LINE|L1	-2994	NR_147176	647215		NR_147176	ENSG00000293444	MROH3P	C1orf81	maestro heat like repeat family member 3, pseudogene	pseudo
5811	chr1	26598551	26598850	+	0	NA	Intergenic	AluJb|SINE|Alu	44158	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
34853	chr11	326321	327440	+	0	NA	Intergenic	Intergenic	-6020	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
133730	chr2	127389571	127390330	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-1485	NM_001371911	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
112678	chr19	7031621	7033080	+	0	NA	exon (NM_001136507, exon 2 of 2)	exon (NM_001136507, exon 2 of 2)	1767	NM_001136507	284428		NM_001136507	ENSG00000237247	MBD3L5	-	methyl-CpG binding domain protein 3 like 5	protein-coding
59666	chr13	28637921	28638180	+	0	NA	Intergenic	Intergenic	-21080	NM_015932	51371		NM_015932	ENSG00000132963	POMP	C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1	proteasome maturation protein	protein-coding
159440	chr3	13656921	13657330	+	0	NA	intron (NR_027103, intron 1 of 5)	intron (NR_027103, intron 1 of 5)	6404	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
109244	chr19	512681	513180	+	0	NA	intron (NM_033513, intron 1 of 1)	intron (NM_033513, intron 1 of 1)	5433	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
227635	chr9	92887931	92888450	+	0	NA	non-coding (NR_111003, exon 4 of 4)	non-coding (NR_111003, exon 4 of 4)	5623	NR_111003	642943		NR_111003		LOC642943	-	SPATA31 subfamily A pseudogene	pseudo
39631	chr11	61482521	61482780	+	0	NA	intron (NM_145017, intron 3 of 13)	intron (NM_145017, intron 3 of 13)	1530	NM_145017	220004		NM_145017	ENSG00000162148	SAXO4	C11orf66|IIIG9|PPP1R32	stabilizer of axonemal microtubules 4	protein-coding
126947	chr2	33594151	33594250	+	0	NA	intron (NM_015475, intron 2 of 7)	intron (NM_015475, intron 2 of 7)	5099	NM_015475	25940		NM_015475	ENSG00000119812	FAM98A	-	family with sequence similarity 98 member A	protein-coding
238278	chrX	149470821	149471350	+	0	NA	Intergenic	CpG	34221	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
84388	chr16	30310701	30311380	+	0	NA	intron (NR_002453, intron 1 of 12)	MER77B|LTR|ERVL	24334	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
38498	chr11	45876521	45876780	+	0	NA	intron (NM_021117, intron 11 of 11)	intron (NM_021117, intron 11 of 11)	-9001	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
4480	chr1	21446551	21446650	+	0	NA	intron (NM_001256417, intron 2 of 13)	(TCCC)n|Simple_repeat|Simple_repeat	6463	NM_001377493	84224		NM_032264	ENSG00000142794	NBPF3	AE2	NBPF member 3	protein-coding
180671	chr5	18747271	18747830	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	940276	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
167209	chr3	128421551	128421650	+	0	NA	Intergenic	Intergenic	-41994	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
222752	chr8	141414801	141415880	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-6048	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
13846	chr1	117651371	117652230	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	45752	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
134250	chr2	135164721	135164800	+	0	NA	intron (NM_012233, intron 23 of 23)	intron (NM_012233, intron 23 of 23)	28132	NR_145723	109616967		NR_145723	ENSG00000208308	SNORA40B	-	small nucleolar RNA, H/ACA box 40B	snoRNA
208751	chr7	73526451	73526550	+	0	NA	Intergenic	AluJb|SINE|Alu	-4207	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
20429	chr1	198254551	198254880	+	0	NA	intron (NM_133494, intron 3 of 9)	L1ME3E|LINE|L1	97717	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
97820	chr17	44867451	44867750	+	0	NA	intron (NM_001258354, intron 13 of 27)	intron (NM_001258354, intron 13 of 27)	19717	NM_016438	51751		NM_016438	ENSG00000131097	HIGD1B	CLST11240|CLST11240-15	HIG1 hypoxia inducible domain family member 1B	protein-coding
49942	chr12	39990401	39990800	+	0	NA	intron (NM_052885, intron 3 of 9)	intron (NM_052885, intron 3 of 9)	115481	NM_052885	114134		NM_052885	ENSG00000151229	SLC2A13	HMIT	solute carrier family 2 member 13	protein-coding
120216	chr19	42301151	42301250	+	0	NA	promoter-TSS (NM_199285)	promoter-TSS (NM_199285)	-932	NM_199285	284338		NM_199285	ENSG00000188368	PRR19	-	proline rich 19	protein-coding
84512	chr16	30510071	30510230	+	0	NA	intron (NM_002209, intron 21 of 30)	AluJr|SINE|Alu	6231	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
71472	chr14	105908451	105908950	+	0	NA	Intergenic	Intergenic	-9279	NR_026800	9834		NM_014151	ENSG00000226777	FAM30A	C14orf110|HSPC053|KIAA0125	family with sequence similarity 30 member A	ncRNA
149441	chr21	31465651	31465750	+	0	NA	intron (NM_001353688, intron 1 of 29)	AluY|SINE|Alu	93387	NM_001353689	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
191164	chr6	4906401	4907230	+	0	NA	intron (NM_001368126, intron 2 of 6)	intron (NM_001368126, intron 2 of 6)	16775	NM_001143971	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
38105	chr11	35223301	35223500	+	0	NA	TTS (NM_001202557)	TTS (NM_001202557)	60450	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
116125	chr19	17326871	17327390	+	0	NA	intron (NM_020959, intron 16 of 17)	intron (NM_020959, intron 16 of 17)	7725	NM_020959	57719		NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
4823	chr1	23615571	23616130	+	0	NA	Intergenic	L2b|LINE|L2	-11484	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
114967	chr19	14007901	14009250	+	0	NA	Intergenic	AluJb|SINE|Alu	-2255	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
192111	chr6	16723901	16724400	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	36034	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
140244	chr2	231924971	231925600	+	0	NA	intron (NM_024409, intron 2 of 2)	CpG	1111	NM_024409	4880		NM_024409	ENSG00000163273	NPPC	CNP|CNP2	natriuretic peptide C	protein-coding
139192	chr2	219244101	219244400	+	0	NA	promoter-TSS (NM_001286427)	promoter-TSS (NM_001286427)	-619	NM_001286427	79411		NM_024506	ENSG00000163521	GLB1L	-	galactosidase beta 1 like	protein-coding
131651	chr2	97647901	97648550	+	0	NA	3' UTR (NM_001862, exon 4 of 4)	3' UTR (NM_001862, exon 4 of 4)	2163	NM_001862	1329		NM_001862	ENSG00000135940	COX5B	COXVB	cytochrome c oxidase subunit 5B	protein-coding
221060	chr8	116865651	116866000	+	0	NA	intron (NM_006265, intron 2 of 13)	L1MC1|LINE|L1	-8599	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
215020	chr7	152403371	152403930	+	0	NA	intron (NM_170606, intron 1 of 58)	L1PA16|LINE|L1	32353	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
105521	chr17	83114771	83114930	+	0	NA	Intergenic	Intergenic	33704	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
9285	chr1	46408601	46409200	+	0	NA	intron (NM_001441, intron 8 of 14)	intron (NM_001441, intron 8 of 14)	14583	NM_001441	2166		NM_001441	ENSG00000117480	FAAH	FAAH-1|FAAH1|PSAB	fatty acid amide hydrolase	protein-coding
9333	chr1	46607851	46608150	+	0	NA	3' UTR (NM_145279, exon 4 of 4)	3' UTR (NM_145279, exon 4 of 4)	-3732	NM_001377373	8569		NM_003684	ENSG00000079277	MKNK1	MNK1	MAPK interacting serine/threonine kinase 1	protein-coding
25710	chr10	8993541	8994530	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	96046	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
33007	chr10	110610221	110610700	+	0	NA	Intergenic	Intergenic	-33876	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
226197	chr9	65258901	65259550	+	0	NA	Intergenic	Intergenic	25984	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
56357	chr12	113089151	113090100	+	0	NA	intron (NM_004416, intron 3 of 9)	intron (NM_004416, intron 3 of 9)	32895	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
30112	chr10	73997271	74000280	+	0	NA	intron (NM_014000, intron 1 of 21)	intron (NM_014000, intron 1 of 21)	659	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
187972	chr5	149456101	149456300	+	0	NA	Intergenic	Intergenic	25554	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
209047	chr7	74663801	74664000	+	0	NA	intron (NM_001163636, intron 1 of 33)	AluSx1|SINE|Alu	6182	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
58293	chr12	130763551	130765730	+	0	NA	Intergenic	Intergenic	-48335	NM_001351233	23504		NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
131901	chr2	98765601	98767000	+	0	NA	intron (NR_126337, intron 3 of 3)	intron (NR_126337, intron 3 of 3)	5598	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
139049	chr2	218671301	218672680	+	0	NA	promoter-TSS (NM_001243313)	promoter-TSS (NM_001243313)	12	NM_022453	64320		NM_022453	ENSG00000163481	RNF25	AO7	ring finger protein 25	protein-coding
160186	chr3	23761451	23761880	+	0	NA	Intergenic	Intergenic	-44290	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
100441	chr17	61222491	61223350	+	0	NA	intron (NM_001353144, intron 24 of 25)	intron (NM_001353144, intron 24 of 25)	144784	NR_136397	101927855		NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
37029	chr11	12112971	12113330	+	0	NA	intron (NR_144415, intron 1 of 26)	intron (NR_144415, intron 1 of 26)	2560	NR_144416	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
229738	chr9	124940371	124942050	+	0	NA	promoter-TSS (NM_002077)	promoter-TSS (NM_002077)	-127	NM_002077	2800		NM_002077	ENSG00000136935	GOLGA1	golgin-97	golgin A1	protein-coding
51585	chr12	52636271	52636630	+	0	NA	Intergenic	MIR|SINE|MIR	15761	NM_000423	3849		NM_000423	ENSG00000172867	KRT2	CK-2e|K2e|KRT2A|KRT2E|KRTE	keratin 2	protein-coding
224509	chr9	19098151	19098650	+	0	NA	intron (NM_017645, intron 1 of 16)	AluSc|SINE|Alu	4504	NM_017645	54801		NM_017645	ENSG00000147874	HAUS6	Dgt6|FAM29A	HAUS augmin like complex subunit 6	protein-coding
191505	chr6	11260351	11260930	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-27958	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
226222	chr9	65797901	65798100	+	0	NA	intron (NR_121570, intron 1 of 4).3	intron (NR_121570, intron 1 of 4).3	6879	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
1067	chr1	1910651	1912100	+	0	NA	Intergenic	Intergenic	-3885	NM_001330313	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
233613	chrX	371251	371550	+	0	NA	intron (NM_013239, intron 1 of 12)	CpG	15507	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
106673	chr18	23180651	23181150	+	0	NA	intron (NM_138375, intron 1 of 9)	intron (NM_138375, intron 1 of 9)	25075	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
184646	chr5	107476621	107477980	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	193637	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
177052	chr4	107993051	107993230	+	0	NA	intron (NM_001184705, intron 1 of 8)	intron (NM_001184705, intron 1 of 8)	3251	NM_005327	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
170280	chr3	184312521	184313150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1660	NM_001194947	1981		NM_004953	ENSG00000114867	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma 1	protein-coding
99433	chr17	50116451	50116550	+	0	NA	intron (NM_174920, intron 4 of 10)	AluSq2|SINE|Alu	13660	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
44883	chr11	114348071	114348730	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	31639	NR_120567	101928940		NR_120567	ENSG00000256195	LOC101928940	-	uncharacterized LOC101928940	ncRNA
208939	chr7	74096721	74097100	+	0	NA	intron (NM_001204426, intron 2 of 14)	intron (NM_001204426, intron 2 of 14)	3693	NM_001204426	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
103684	chr17	78801821	78802500	+	0	NA	intron (NR_169585, intron 17 of 19)	CpG	-19818	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
138937	chr2	218244521	218244780	+	0	NA	intron (NM_152862, intron 7 of 10)	L2c|LINE|L2	-14846	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
31774	chr10	98142351	98142650	+	0	NA	intron (NM_001351012, intron 1 of 8)	AluSz6|SINE|Alu	7843	NM_001256619	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
176799	chr4	102523171	102524030	+	0	NA	intron (NM_001382625, intron 2 of 24)	MLT1J2|LTR|ERVL-MaLR	-21114	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
131378	chr2	96246471	96246630	+	0	NA	Intergenic	Intergenic	19447	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
139227	chr2	219296401	219296600	+	0	NA	exon (NM_001199764, exon 17 of 23)	exon (NM_001199764, exon 17 of 23)	-2300	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
209229	chr7	75727401	75728900	+	0	NA	intron (NM_001243198, intron 1 of 28)	intron (NM_001243198, intron 1 of 28)	10791	NM_001243198	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
139343	chr2	219626501	219626830	+	0	NA	promoter-TSS (NM_201574)	promoter-TSS (NM_201574)	-905	NM_001326559	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
220386	chr8	100218371	100219130	+	0	NA	intron (NM_001374321, intron 12 of 18)	intron (NM_001374321, intron 12 of 18)	60163	NM_003114	6674		NM_003114	ENSG00000104450	SPAG1	CILD28|CT140|DNAAF13|HEL-S-268|HSD-3.8|SP75|TPIS	sperm associated antigen 1	protein-coding
64573	chr14	24680721	24681350	+	0	NA	Intergenic	Intergenic	-46845	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
42593	chr11	72041701	72043600	+	0	NA	intron (NR_104476, intron 2 of 24)	intron (NR_104476, intron 2 of 24)	28359	NR_104178	100128494		NR_104178	ENSG00000251143	LOC100128494	-	uncharacterized LOC100128494	ncRNA
31615	chr10	97374171	97374330	+	0	NA	intron (NM_015179, intron 15 of 33)	AluJb|SINE|Alu	27090	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
181025	chr5	35868701	35869350	+	0	NA	intron (NM_002185, intron 3 of 7)	intron (NM_002185, intron 3 of 7)	12134	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
166397	chr3	113540271	113540630	+	0	NA	intron (NM_001322297, intron 1 of 24)	L1MC5|LINE|L1	7895	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
61068	chr13	48307371	48307730	+	0	NA	intron (NM_000321, intron 2 of 26)	intron (NM_000321, intron 2 of 26)	3799	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
60766	chr13	45055651	45055750	+	0	NA	Intergenic	Intergenic	-50579	NR_120424	101929259		NR_120424		LOC101929259	-	uncharacterized LOC101929259	ncRNA
170001	chr3	180267221	180267480	+	0	NA	Intergenic	Intergenic	-146823	NR_132416	100505609		NR_132416	ENSG00000241696	LINC02053	-	long intergenic non-protein coding RNA 2053	ncRNA
79869	chr16	1507621	1507880	+	0	NA	intron (NM_016111, intron 20 of 20)	(GT)n|Simple_repeat|Simple_repeat	14390	NM_016111	9894		NM_016111	ENSG00000100726	TELO2	CLK2|TEL2|YHFS	telomere maintenance 2	protein-coding
37197	chr11	14313121	14313730	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	45060	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
165464	chr3	98730371	98730550	+	0	NA	intron (NR_046683, intron 1 of 4)	intron (NR_046683, intron 1 of 4)	-1776	NM_001323362	10402		NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
239024	chrY	3002101	3002350	+	0	NA	promoter-TSS (NR_046502)	promoter-TSS (NR_046502)	401	NR_144458	107987337		NR_144458	ENSG00000233070	ZFY-AS1	ZFY-AS|ZFYAS	ZFY antisense RNA 1	ncRNA
2411	chr1	9581921	9582180	+	0	NA	intron (NM_032315, intron 6 of 6)	AluSz6|SINE|Alu	-6861	NM_001010866	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
147995	chr20	63018071	63018230	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	8767	NR_033370	63930		NR_033370	ENSG00000272259	LINC01749	-	long intergenic non-protein coding RNA 1749	ncRNA
106774	chr18	23824301	23825080	+	0	NA	intron (NM_198129, intron 21 of 74)	intron (NM_198129, intron 21 of 74)	-48330	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
44721	chr11	111764021	111764280	+	0	NA	intron (NM_181700, intron 1 of 13)	L2c|LINE|L2	2239	NM_001177562	5519		NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
170334	chr3	184383551	184383850	+	0	NA	intron (NR_130747, intron 10 of 19)	intron (NR_130747, intron 10 of 19)	3390	NM_001304473	8646		NM_003741	ENSG00000090539	CHRD	-	chordin	protein-coding
233714	chrX	1316571	1316730	+	0	NA	intron (NM_001379159, intron 13 of 13)	intron (NM_001379159, intron 13 of 13)	-19966	NM_001267713	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
186443	chr5	136193121	136193380	+	0	NA	promoter-TSS (NM_001350994)	promoter-TSS (NM_001350994)	-88	NM_001350994	389332		NM_001350994	ENSG00000271824	SMIM32	-	small integral membrane protein 32	protein-coding
5253	chr1	25024071	25024930	+	0	NA	TTS (NR_039623)	TTS (NR_039623)	997	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
101155	chr17	65058421	65058680	+	0	NA	Intergenic	Intergenic	-1810	NM_006572	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
104476	chr17	81124021	81124480	+	0	NA	intron (NM_001080395, intron 9 of 13)	intron (NM_001080395, intron 9 of 13)	1123	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
81852	chr16	11616221	11616680	+	0	NA	Intergenic	AluJr|SINE|Alu	-28984	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
29598	chr10	71744451	71744830	+	0	NA	intron (NM_022124, intron 36 of 67)	intron (NM_022124, intron 36 of 67)	-6790	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
112351	chr19	5951271	5951880	+	0	NA	exon (NM_007322, exon 3 of 17)	exon (NM_007322, exon 3 of 17)	26565	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
122304	chr19	49110721	49111180	+	0	NA	Intergenic	AluJr4|SINE|Alu	-3420	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
180358	chr5	6766501	6766880	+	0	NA	Intergenic	(CTCC)n|Simple_repeat|Simple_repeat	-29190	NR_146281	109729133		NR_146281	ENSG00000251365	LINC02236	-	long intergenic non-protein coding RNA 2236	ncRNA
184990	chr5	114449901	114450130	+	0	NA	intron (NR_130785, intron 11 of 12)	intron (NR_130785, intron 11 of 12)	16504	NM_170775	3781		NM_021614	ENSG00000080709	KCNN2	DYT34|KCa2.2|NEDMAB|SK2|SKCA2|SKCa 2|hSK2	potassium calcium-activated channel subfamily N member 2	protein-coding
108032	chr18	59057201	59057430	+	0	NA	Intergenic	Intergenic	21636	NR_024021	390858		NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
122031	chr19	48628051	48628400	+	0	NA	exon (NM_001243876, exon 5 of 6)	exon (NM_001243876, exon 5 of 6)	3196	NM_001204160	56848		NM_020126	ENSG00000063176	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding
123662	chr19	54835001	54835600	+	0	NA	promoter-TSS (NR_110737).2	promoter-TSS (NR_110737).2	-8	NR_110738	101928804		NR_110737		LOC101928804	-	uncharacterized LOC101928804	ncRNA
50484	chr12	47781751	47781930	+	0	NA	TTS (NM_001308090)	TTS (NM_001308090)	8602	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
11443	chr1	89826301	89826450	+	0	NA	intron (NM_018103, intron 1 of 2)	AluYc|SINE|Alu	4436	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
66502	chr14	61704701	61704900	+	0	NA	intron (NM_001243084, intron 1 of 14)	Charlie8|DNA|hAT-Charlie	7178	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
103783	chr17	79006851	79006950	+	0	NA	intron (NM_001159772, intron 1 of 5)	intron (NM_001159772, intron 1 of 5)	2864	NM_001159772	124583		NM_138793	ENSG00000171302	CANT1	DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
222880	chr8	142772401	142773350	+	0	NA	3' UTR (NM_001356370, exon 4 of 4)	3' UTR (NM_001356370, exon 4 of 4)	-3047	NM_001356372	432355		NM_177458	ENSG00000283992	SLURP2	SLURP-2	secreted LY6/PLAUR domain containing 2	protein-coding
143944	chr20	32775271	32775630	+	0	NA	intron (NM_175849, intron 1 of 19)	intron (NM_175849, intron 1 of 19)	-4402	NM_175850	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
179296	chr4	177323271	177323430	+	0	NA	intron (NM_018248, intron 2 of 9)	intron (NM_018248, intron 2 of 9)	13476	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
171560	chr3	196932071	196932230	+	0	NA	3' UTR (NM_152699, exon 10 of 10)	3' UTR (NM_152699, exon 10 of 10)	-7727	NR_046630	100874001		NR_046630		NCBP2-AS1	-	NCBP2 antisense RNA 1	ncRNA
206726	chr7	36603071	36603430	+	0	NA	intron (NM_001177506, intron 11 of 21)	intron (NM_001177506, intron 11 of 21)	-3130	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
178619	chr4	152102571	152102950	+	0	NA	intron (NR_121627, intron 2 of 2)	intron (NR_121627, intron 2 of 2)	1942	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
197813	chr6	87723251	87723950	+	0	NA	Intergenic	Intergenic	-21367	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
4573	chr1	22062721	22063680	+	0	NA	intron (NM_044472, intron 1 of 5)	intron (NM_044472, intron 1 of 5)	10491	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
72840	chr15	40137701	40137900	+	0	NA	Intergenic	Intergenic	-23269	NM_001211	701		NM_001211	ENSG00000156970	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
139076	chr2	218864971	218865330	+	0	NA	intron (NM_006522, intron 1 of 3)	intron (NM_006522, intron 1 of 3)	5345	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
36918	chr11	10802271	10802430	+	0	NA	promoter-TSS (NR_004403)	promoter-TSS (NR_004403)	-742	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
115459	chr19	15348851	15348950	+	0	NA	Intergenic	AluY|SINE|Alu	-16361	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
61994	chr13	80399471	80400580	+	0	NA	Intergenic	LTR3B|LTR|ERVK	-58899	NM_005842	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
67847	chr14	74016221	74016750	+	0	NA	intron (NM_001321986, intron 1 of 16)	AluJb|SINE|Alu	2803	NM_001382257	957		NM_001249	ENSG00000187097	ENTPD5	CD39L4|NTPDase-5|PCPH	ectonucleoside triphosphate diphosphohydrolase 5 (inactive)	protein-coding
171689	chr3	197774471	197774730	+	0	NA	intron (NR_027840, intron 6 of 8)	intron (NR_027840, intron 6 of 8)	-16626	NM_001363887	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
229390	chr9	121176551	121176850	+	0	NA	intron (NM_007018, intron 43 of 43)	intron (NM_007018, intron 43 of 43)	-24783	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
174009	chr4	26363051	26363380	+	0	NA	intron (NM_203284, intron 2 of 11)	AluSx4|SINE|Alu	20075	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
185937	chr5	132949421	132949850	+	0	NA	intron (NM_014423, intron 1 of 20)	AluYm1|SINE|Alu	13999	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
46237	chr11	124671701	124672200	+	0	NA	intron (NM_001199922, intron 3 of 11)	AluSx3|SINE|Alu	1789	NM_170601	54414		NM_018978	ENSG00000110013	SIAE	AIS6|CSE-C|CSEC|LSE|YSG2	sialic acid acetylesterase	protein-coding
96761	chr17	41710071	41710980	+	0	NA	Intergenic	Intergenic	-1806	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
204424	chr7	3112571	3113500	+	0	NA	Intergenic	Intergenic	45538	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
112857	chr19	7554871	7555600	+	0	NA	intron (NM_006702, intron 25 of 34)	CpG-13552	19518	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
37399	chr11	17205201	17205400	+	0	NA	intron (NM_001321378, intron 1 of 33)	AluSc|SINE|Alu	2686	NM_002645	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
20501	chr1	198656421	198657060	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	17700	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
199923	chr6	127885071	127885230	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	15931	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
105345	chr17	82632571	82632930	+	0	NA	intron (NM_019613, intron 2 of 9)	AluJo|SINE|Alu	15694	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
161319	chr3	39412171	39412330	+	0	NA	intron (NM_002295, intron 6 of 6)	intron (NM_002295, intron 6 of 6)	1196	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
31432	chr10	95793651	95794180	+	0	NA	intron (NR_038444, intron 4 of 5)	intron (NR_038444, intron 4 of 5)	37752	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
198233	chr6	98946851	98948680	+	0	NA	intron (NM_001278716, intron 1 of 9)	CpG	181	NM_001278716	26235		NM_012160	ENSG00000112234	FBXL4	FBL4|FBL5|MTDPS13	F-box and leucine rich repeat protein 4	protein-coding
105870	chr18	3177901	3178130	+	0	NA	intron (NM_019856, intron 5 of 36)	intron (NM_019856, intron 5 of 36)	41953	NM_019856	8736		NM_003803	ENSG00000101605	MYOM1	SKELEMIN	myomesin 1	protein-coding
128598	chr2	60966271	60966980	+	0	NA	intron (NM_001322123, intron 6 of 17)	intron (NM_001322123, intron 6 of 17)	50587	NM_001322124	150962		NM_144709	ENSG00000162927	PUS10	CCDC139|DOBI|Hup10	pseudouridine synthase 10	protein-coding
133398	chr2	118633021	118633150	+	0	NA	Intergenic	(CGCCC)n|Simple_repeat|Simple_repeat	-30119	NR_110272	101927709		NR_110272		LOC101927709	-	uncharacterized LOC101927709	ncRNA
97738	chr17	44383351	44384000	+	0	NA	exon (NM_000419, exon 12 of 30)	exon (NM_000419, exon 12 of 30)	5974	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
262	chr1	921951	922430	+	0	NA	non-coding (NR_168405, exon 5 of 5)	non-coding (NR_168405, exon 5 of 5)	-1733	NM_001385640	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
171717	chr3	197921051	197921150	+	0	NA	intron (NM_032263, intron 7 of 11)	intron (NM_032263, intron 7 of 11)	28825	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
141126	chr2	239069021	239069780	+	0	NA	promoter-TSS (NR_039642)	promoter-TSS (NR_039642)	-486	NR_039642	100616397		NR_039642	ENSG00000266109	MIR4440	mir-4440	microRNA 4440	ncRNA
55793	chr12	108637121	108637430	+	0	NA	Intergenic	MIR|SINE|MIR	1465	NR_039717	100616240		NR_039717	ENSG00000284388	MIR4496	-	microRNA 4496	ncRNA
152972	chr22	23110551	23110850	+	0	NA	intron (NM_002073, intron 2 of 2)	intron (NM_002073, intron 2 of 2)	31290	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
32921	chr10	110221371	110222300	+	0	NA	intron (NM_001008541, intron 1 of 4)	intron (NM_001008541, intron 1 of 4)	-4161	NM_005962	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
194115	chr6	31956021	31956280	+	0	NA	TTS (NR_031601).5	TTS (NR_031601).5	790	NR_031601	100302242		NR_031601	ENSG00000284446	MIR1236	MIRN1236|hsa-mir-1236	microRNA 1236	ncRNA
97569	chr17	44090571	44090730	+	0	NA	intron (NM_001382393, intron 11 of 26)	AluSx1|SINE|Alu	19739	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
57916	chr12	123510301	123510500	+	0	NA	intron (NM_178314, intron 2 of 6)	(TG)n|Simple_repeat|Simple_repeat	9826	NM_001319244	353116		NM_178314	ENSG00000188026	RILPL1	GOSPEL|OPDM4|RLP1	Rab interacting lysosomal protein like 1	protein-coding
123916	chr19	55356101	55356500	+	0	NA	intron (NM_001145402, intron 9 of 10)	AluJr|SINE|Alu	-1581	NM_001369799	125965		NM_144613	ENSG00000160471	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit 6B2	protein-coding
79671	chr16	1240121	1241330	+	0	NA	promoter-TSS (NM_003294)	promoter-TSS (NM_003294)	20	NM_003294	7177		NM_003294	ENSG00000172236	TPSAB1	TPS1|TPS2|TPSB1|TPSB2|Tryptase-2	tryptase alpha/beta 1	protein-coding
28210	chr10	44974601	44975630	+	0	NA	intron (NM_032023, intron 3 of 10)	CpG	3694	NM_007021	11067		NM_007021	ENSG00000165507	DEPP1	C10orf10|DEPP|FIG|Fseg	DEPP autophagy regulator 1	protein-coding
168389	chr3	142022421	142022680	+	0	NA	intron (NM_001375776, intron 3 of 13)	intron (NM_001375776, intron 3 of 13)	6076	NM_001375756	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
166891	chr3	124619451	124620180	+	0	NA	intron (NM_001322999, intron 1 of 14)	L1MA9|LINE|L1	35156	NM_001322997	8997		NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|KALNC2|TRAD	kalirin RhoGEF kinase	protein-coding
5835	chr1	26702221	26703180	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	6685	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
232470	chr9	136203021	136203780	+	0	NA	promoter-TSS (NM_014564)	promoter-TSS (NM_014564)	-211	NM_014564	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
178787	chr4	153480451	153481600	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	14665	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
191932	chr6	15628501	15629100	+	0	NA	intron (NM_183040, intron 4 of 8)	intron (NM_183040, intron 4 of 8)	34228	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
95845	chr17	38818301	38818930	+	0	NA	intron (NR_073428, intron 2 of 10)	AluY|SINE|Alu	6706	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
86930	chr16	68095201	68095750	+	0	NA	intron (NM_173165, intron 1 of 9)	AluSx|SINE|Alu	10105	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
14559	chr1	144935451	144935750	+	0	NA	intron (NM_001385228, intron 3 of 8)	intron (NM_001385228, intron 3 of 8)	-158696	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
31254	chr10	91976921	91977000	+	0	NA	intron (NR_165098, intron 15 of 38)	L2c|LINE|L2	53190	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
44130	chr11	96107671	96108030	+	0	NA	intron (NM_032427, intron 1 of 4)	MER21B|LTR|ERVL	-183743	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
79520	chr16	804621	805350	+	0	NA	promoter-TSS (NM_001013638)	promoter-TSS (NM_001013638)	-458	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
5537	chr1	25816621	25816880	+	0	NA	3' UTR (NM_020451, exon 13 of 13)	3' UTR (NM_020451, exon 13 of 13)	-3156	NM_001099627	56181		NM_019557	ENSG00000117640	MTFR1L	FAM54B|HYST1888|MST116|MSTP116	mitochondrial fission regulator 1 like	protein-coding
48694	chr12	10598101	10598300	+	0	NA	non-coding (NR_028045, exon 2 of 7)	non-coding (NR_028045, exon 2 of 7)	1635	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
113131	chr19	8320371	8322060	+	0	NA	promoter-TSS (NM_001031)	promoter-TSS (NM_001031)	160	NM_005001	4701		NM_005001	ENSG00000267855	NDUFA7	B14.5a|CI-B14.5a	NADH:ubiquinone oxidoreductase subunit A7	protein-coding
210554	chr7	100338521	100339300	+	0	NA	intron (NR_036570, intron 3 of 16)	intron (NR_036570, intron 3 of 16)	-2603	NR_003613	5379		NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
220501	chr8	100563721	100564580	+	0	NA	Intergenic	Intergenic	-4391	NM_001270377	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
56159	chr12	111400271	111400430	+	0	NA	Intergenic	AluJo|SINE|Alu	-5573	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
18546	chr1	162433351	162433450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-21264	NM_053282	117157		NM_053282	ENSG00000198574	SH2D1B	EAT2	SH2 domain containing 1B	protein-coding
202256	chr6	156955751	156956200	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-80452	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
128566	chr2	60895251	60895750	+	0	NA	intron (NM_001291746, intron 3 of 9)	(CATTAA)n|Simple_repeat|Simple_repeat	13926	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
161013	chr3	37854251	37854350	+	0	NA	intron (NR_110532, intron 1 of 5)	intron (NR_110532, intron 1 of 5)	7480	NR_110532	101928153		NR_110531	ENSG00000235257	ITGA9-AS1	-	ITGA9 antisense RNA 1	ncRNA
133366	chr2	117816771	117816930	+	0	NA	intron (NM_006773, intron 1 of 13)	Tigger3b|DNA|TcMar-Tigger	2159	NM_006773	8886		NM_006773	ENSG00000088205	DDX18	Has1|MrDb	DEAD-box helicase 18	protein-coding
15118	chr1	148658401	148658600	+	0	NA	intron (NM_001364007, intron 1 of 4)	intron (NM_001364007, intron 1 of 4)	21246	NM_001364007	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
104449	chr17	81096571	81096730	+	0	NA	promoter-TSS (NM_001385157)	promoter-TSS (NM_001385157)	-961	NM_001385159	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
234447	chrX	17377471	17377830	+	0	NA	intron (NM_001291867, intron 1 of 8)	CpG	2450	NM_001291867	4810		NM_198270	ENSG00000188158	NHS	CTRCT40|CXN|SCML1	NHS actin remodeling regulator	protein-coding
40382	chr11	64001771	64003030	+	0	NA	intron (NM_014067, intron 4 of 10)	intron (NM_014067, intron 4 of 10)	16547	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
221119	chr8	118106221	118106680	+	0	NA	intron (NM_000127, intron 1 of 10)	MIR3|SINE|MIR	5376	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
147482	chr20	59147851	59148050	+	0	NA	intron (NM_001384354, intron 2 of 7)	intron (NM_001384354, intron 2 of 7)	-15871	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
100712	chr17	63848451	63849700	+	0	NA	Intergenic	CpG	-6390	NM_001098426	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
40518	chr11	64283921	64285000	+	0	NA	promoter-TSS (NM_001378087)	promoter-TSS (NM_001378087)	205	NM_032989	572		NM_004322	ENSG00000002330	BAD	BBC2|BCL2L8	BCL2 associated agonist of cell death	protein-coding
164252	chr3	57226021	57226480	+	0	NA	intron (NM_001376058, intron 2 of 6)	intron (NM_001376058, intron 2 of 6)	1365	NR_164757	8820		NM_003865	ENSG00000163666	HESX1	ANF|CPHD5|RPX	HESX homeobox 1	protein-coding
88662	chr16	85655371	85655980	+	0	NA	intron (NM_001278184, intron 4 of 14)	intron (NM_001278184, intron 4 of 14)	33279	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
94184	chr17	28550921	28551250	+	0	NA	intron (NM_054035, intron 1 of 3)	intron (NM_054035, intron 1 of 3)	1539	NM_001330166	9094		NM_005148	ENSG00000109103	UNC119	CORD24|HRG4|IMD13|POC7|POC7A	unc-119 lipid binding chaperone	protein-coding
237981	chrX	134338501	134338730	+	0	NA	Intergenic	L3|LINE|CR1	-34697	NM_001015877	84295		NM_032335	ENSG00000156531	PHF6	BFLS|BORJ|CENP-31	PHD finger protein 6	protein-coding
228189	chr9	97636851	97636950	+	0	NA	intron (NM_001351507, intron 1 of 21)	L2a|LINE|L2	3079	NM_002486	4686		NM_002486	ENSG00000136937	NCBP1	CBP80|NCBP|Sto1	nuclear cap binding protein subunit 1	protein-coding
168083	chr3	138186851	138188250	+	0	NA	promoter-TSS (NM_015396)	promoter-TSS (NM_015396)	19	NM_015396	25852		NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
15811	chr1	151293621	151294450	+	0	NA	exon (NM_002651, exon 12 of 13)	exon (NM_002651, exon 12 of 13)	11736	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
119575	chr19	40667821	40668180	+	0	NA	exon (NM_001289979, exon 9 of 9)	exon (NM_001289979, exon 9 of 9)	22164	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
11819	chr1	92840551	92841380	+	0	NA	TTS (NR_002444)	TTS (NR_002444)	246	NR_002444	26782		NR_002444	ENSG00000207523	SNORA66	RNU66|U66	small nucleolar RNA, H/ACA box 66	snoRNA
163732	chr3	52314901	52315300	+	0	NA	Intergenic	Intergenic	-1219	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
165008	chr3	71383671	71384050	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-79089	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
21894	chr1	207810051	207810350	+	0	NA	intron (NR_135299, intron 4 of 5)	intron (NR_135299, intron 4 of 5)	-7677	NR_029518	407025		NR_029518	ENSG00000284203	MIR29B2	MIRN29B2	microRNA 29b-2	ncRNA
218848	chr8	59968951	59969450	+	0	NA	Intergenic	Intergenic	312200	NM_001321837	767		NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
27947	chr10	42080601	42081080	+	0	NA	Intergenic	Intergenic	287205	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
114355	chr19	12295771	12295930	+	0	NA	promoter-TSS (NM_001353553)	promoter-TSS (NM_001353553)	-951	NM_001353553	51710		NM_016264	ENSG00000197857	ZNF44	GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58	zinc finger protein 44	protein-coding
227552	chr9	91949921	91950450	+	0	NA	promoter-TSS (NM_004560)	promoter-TSS (NM_004560)	43	NM_004560	4920		NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
127261	chr2	38705371	38705530	+	0	NA	intron (NM_138801, intron 4 of 6)	L2c|LINE|L2	39336	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
179268	chr4	176197271	176197630	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-1865	NM_144644	132851		NM_144644	ENSG00000150628	SPATA4	CFAP178|FAP178|SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
211756	chr7	107198951	107199050	+	0	NA	intron (NM_001244262, intron 9 of 10).2	intron (NM_001244262, intron 9 of 10).2	29997	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
173980	chr4	26141951	26142250	+	0	NA	Intergenic	Intergenic	-21358	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
34447	chr10	132429271	132429430	+	0	NA	Intergenic	Intergenic	-15839	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
68441	chr14	81486351	81486450	+	0	NA	exon (NM_005065, exon 17 of 21)	exon (NM_005065, exon 17 of 21)	-36243	NR_109999	100506700		NR_109999		LINC02308	-	long intergenic non-protein coding RNA 2308	ncRNA
124035	chr19	55492801	55493330	+	0	NA	intron (NM_001144950, intron 6 of 13)	intron (NM_001144950, intron 6 of 13)	4629	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
125433	chr2	11863271	11864050	+	0	NA	Intergenic	Intergenic	-26674	NR_036226	100422996		NR_036226	ENSG00000265172	MIR4262	-	microRNA 4262	ncRNA
71734	chr15	20533751	20534050	+	0	NA	intron (NM_001145004, intron 8 of 8)	intron (NM_001145004, intron 8 of 8)	7900	NM_001145004	727832		NM_001145004	ENSG00000277322	GOLGA6L6	-	golgin A6 family like 6	protein-coding
230682	chr9	128722851	128723000	+	0	NA	intron (NM_001318015, intron 1 of 4)	intron (NM_001318015, intron 1 of 4)	1202	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
119462	chr19	40424901	40427500	+	0	NA	promoter-TSS (NM_013376)	promoter-TSS (NM_013376)	-208	NM_013376	29950		NM_013376	ENSG00000197019	SERTAD1	SEI1|TRIP-Br1|TRIPBR1	SERTA domain containing 1	protein-coding
149712	chr21	34075671	34076150	+	0	NA	intron (NM_032476, intron 1 of 2)	intron (NM_032476, intron 1 of 2)	2332	NM_006933	6526		NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
89048	chr16	88436751	88436850	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-16480	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
159054	chr3	11626001	11626680	+	0	NA	intron (NM_014667, intron 2 of 5)	intron (NM_014667, intron 2 of 5)	17575	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
169190	chr3	156711251	156711350	+	0	NA	Intergenic	Intergenic	34636	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
143022	chr20	21048751	21049050	+	0	NA	Intergenic	Intergenic	57458	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
184679	chr5	108379601	108380100	+	0	NA	intron (NM_001163315, intron 1 of 8)	intron (NM_001163315, intron 1 of 8)	2248	NM_001163315	64839		NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
174303	chr4	38512521	38512780	+	0	NA	intron (NR_149076, intron 1 of 2)	intron (NR_149076, intron 1 of 2)	2883	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
214166	chr7	144812601	144813300	+	0	NA	intron (NR_146934, intron 1 of 6)	intron (NR_146934, intron 1 of 6)	22990	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
235890	chrX	52574701	52574950	+	0	NA	Intergenic	HERV1_I-int|LTR|ERV1	-48110	NR_027250	280659		NM_174961	ENSG00000290686	SSX8P	SSX8	SSX family member 8, pseudogene	pseudo
178802	chr4	153499171	153499480	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	32965	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
187788	chr5	146205621	146206400	+	0	NA	intron (NM_018989, intron 1 of 20)	AluSx4|SINE|Alu	2405	NM_018989	54439		NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18|ZC3H20	RNA binding motif protein 27	protein-coding
129544	chr2	69773901	69774100	+	0	NA	intron (NM_001365496, intron 2 of 13)	AluSx1|SINE|Alu	24998	NR_164155	107985770		NR_164153	ENSG00000288869	SMANTIS	ANXA4-AS|n342419	SMARCA4 interacting SWI/SNF chromatin remodeling complex scaffold lncRNA	ncRNA
45185	chr11	117317251	117317550	+	0	NA	Intergenic	AluSz|SINE|Alu	-1144	NM_012104	23621		NM_012104	ENSG00000186318	BACE1	ASP2|BACE|HSPC104	beta-secretase 1	protein-coding
234331	chrX	14095701	14096000	+	0	NA	Intergenic	Intergenic	-65958	NM_001042479	54960		NM_017856	ENSG00000046647	GEMIN8	FAM51A1	gem nuclear organelle associated protein 8	protein-coding
36852	chr11	10310471	10310630	+	0	NA	intron (NR_103765, intron 1 of 3)	intron (NR_103765, intron 1 of 3)	2237	NR_103765	100130460		NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
114660	chr19	13055871	13056030	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	31171	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
18742	chr1	167482001	167482980	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	36039	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
217119	chr8	25170121	25170580	+	0	NA	Intergenic	Intergenic	-14339	NM_001322810	80005		NM_024940	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
6605	chr1	28792521	28792780	+	0	NA	Intergenic	AluJo|SINE|Alu	-19520	NM_000911	4985		NM_000911	ENSG00000116329	OPRD1	DOP|DOR|DOR1|OPRD	opioid receptor delta 1	protein-coding
234004	chrX	3639251	3640230	+	0	NA	intron (NM_005044, intron 4 of 8)	intron (NM_005044, intron 4 of 8)	-19747	NR_046643	100873944		NR_046643	ENSG00000236188	PRKX-AS1	-	PRKX antisense RNA 1	ncRNA
136318	chr2	175108171	175108530	+	0	NA	intron (NR_045772, intron 10 of 14)	SVA_C|Retroposon|SVA	59359	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
108683	chr18	77000451	77001200	+	0	NA	intron (NM_001025090, intron 1 of 5)	intron (NM_001025090, intron 1 of 5)	16230	NM_001025090	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
102761	chr17	76280521	76280780	+	0	NA	intron (NM_032134, intron 10 of 18)	intron (NM_032134, intron 10 of 18)	15302	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
128762	chr2	62205951	62206050	+	0	NA	TTS (NR_049824)	TTS (NR_049824)	174	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
231684	chr9	131703051	131703350	+	0	NA	intron (NM_001377935, intron 1 of 26)	AluJo|SINE|Alu	6642	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
23245	chr1	227792221	227793130	+	0	NA	TTS (NR_168380)	TTS (NR_168380)	4155	NR_168384	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
203378	chr6	170466801	170467150	+	0	NA	Intergenic	Intergenic	86332	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
7839	chr1	36319771	36319930	+	0	NA	exon (NM_001162530, exon 14 of 16)	exon (NM_001162530, exon 14 of 16)	3795	NM_001304762	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
105608	chr18	711251	712000	+	0	NA	intron (NM_001354065, intron 1 of 14)	intron (NM_001354065, intron 1 of 14)	1005	NM_202758	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
17521	chr1	156769271	156769780	+	0	NA	intron (NM_005973, intron 1 of 6)	intron (NM_005973, intron 1 of 6)	1990	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
100516	chr17	62138151	62138850	+	0	NA	Intergenic	CpG	-73222	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
126996	chr2	36798601	36799400	+	0	NA	intron (NM_053276, intron 12 of 15)	intron (NM_053276, intron 12 of 15)	102293	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
102490	chr17	75751751	75752230	+	0	NA	intron (NM_001381985, intron 8 of 8)	intron (NM_001381985, intron 8 of 8)	13202	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
112214	chr19	5697021	5697530	+	0	NA	intron (NR_076392, intron 11 of 18)	L2a|LINE|L2	6980	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
152294	chr22	20316871	20317030	+	0	NA	intron (NM_033257, intron 2 of 4)	intron (NM_033257, intron 2 of 4)	3110	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
114589	chr19	12937641	12939800	+	0	NA	exon (NM_004343, exon 1 of 9)	exon (NM_004343, exon 1 of 9)	111	NM_004343	811		NM_004343	ENSG00000179218	CALR	CALR1|CRT|HEL-S-99n|RO|SSA|cC1qR	calreticulin	protein-coding
79379	chr16	648781	651100	+	0	NA	promoter-TSS (NR_135177)	promoter-TSS (NR_135177)	575	NM_145294	197335		NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19|POC16	WD repeat domain 90	protein-coding
75753	chr15	68328371	68328730	+	0	NA	intron (NM_001004439, intron 15 of 29)	intron (NM_001004439, intron 15 of 29)	50805	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
22459	chr1	221521501	221522300	+	0	NA	Intergenic	Intergenic	-185604	NR_024236	400804		NR_024236	ENSG00000234754	LINC02817	C1orf140	long intergenic non-protein coding RNA 2817	ncRNA
163811	chr3	52431951	52432600	+	0	NA	TTS (NM_020163)	TTS (NM_020163)	12828	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
238614	chrX	153942951	153943450	+	0	NA	intron (NM_002910, intron 5 of 10)	intron (NM_002910, intron 5 of 10)	1443	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
100831	chr17	64110571	64110930	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	19394	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
182976	chr5	71586321	71587840	+	0	NA	promoter-TSS (NM_001363147)	promoter-TSS (NM_001363147)	-260	NM_001363147	64087		NM_022132	ENSG00000131844	MCCC2	MCCB|MCCCbeta	methylcrotonyl-CoA carboxylase subunit 2	protein-coding
41012	chr11	65427031	65427750	+	0	NA	TTS (NR_028272)	TTS (NR_028272)	4592	NR_131012	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
101613	chr17	68195221	68195580	+	0	NA	Intergenic	Intergenic	-3260	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
163536	chr3	51669151	51669800	+	0	NA	TTS (NM_001322257)	TTS (NM_001322257)	-1700	NM_001129884	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
10585	chr1	67350951	67351050	+	0	NA	exon (NM_001258215, exon 9 of 14)	exon (NM_001258215, exon 9 of 14)	43127	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
105958	chr18	4477651	4477750	+	0	NA	Intergenic	L1HS|LINE|L1	-22393	NM_004746	9229		NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding
231783	chr9	132292971	132293780	+	0	NA	intron (NM_001351527, intron 15 of 25)	intron (NM_001351527, intron 15 of 25)	61481	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
189418	chr5	172831451	172831750	+	0	NA	Intergenic	L2b|LINE|L2	-2651	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
227756	chr9	93102821	93104050	+	0	NA	intron (NR_160511, intron 1 of 4)	MER2|DNA|TcMar-Tigger	7218	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
212017	chr7	114920251	114920350	+	0	NA	Intergenic	MIR|SINE|MIR	-1854	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
108784	chr18	77249201	77250030	+	0	NA	promoter-TSS (NM_001480)	promoter-TSS (NM_001480)	-233	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
86774	chr16	67720971	67721450	+	0	NA	Intergenic	Intergenic	-1894	NM_001243650	81577		NM_030819	ENSG00000141098	GFOD2	-	Gfo/Idh/MocA-like oxidoreductase domain containing 2	protein-coding
72134	chr15	28992901	28993100	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	-2527	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
159830	chr3	16476351	16477250	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	36899	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
16729	chr1	155253771	155253930	+	0	NA	intron (NM_198264, intron 1 of 8).2	intron (NM_198264, intron 1 of 8).2	1633	NM_001267608	10712		NM_006589	ENSG00000160767	ENTREP3	C1orf2|COTE1|FAM189B	endosomal transmembrane epsin interactor 3	protein-coding
125221	chr2	10327801	10328650	+	0	NA	intron (NM_134421, intron 1 of 5)	MIRc|SINE|MIR	-1938	NM_001258357	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
9082	chr1	44987571	44987730	+	0	NA	promoter-TSS (NM_001261418)	promoter-TSS (NM_001261418)	-928	NM_001166588	8891		NM_020365	ENSG00000070785	EIF2B3	EIF-2B|EIF2Bgamma|VWM3	eukaryotic translation initiation factor 2B subunit gamma	protein-coding
67426	chr14	70599071	70599430	+	0	NA	intron (NM_005466, intron 1 of 7)	intron (NM_005466, intron 1 of 7)	1405	NM_005466	10001		NM_005466	ENSG00000133997	MED6	ARC33|NY-REN-28	mediator complex subunit 6	protein-coding
211552	chr7	105530321	105530580	+	0	NA	Intergenic	Intergenic	-1631	NR_144478	60561		NM_021930	ENSG00000135249	RINT1	ILFS3|RINT-1	RAD50 interactor 1	protein-coding
226146	chr9	63452151	63452480	+	0	NA	Intergenic	Intergenic	117777	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
86615	chr16	67392671	67392830	+	0	NA	intron (NM_015964, intron 1 of 3)	intron (NM_015964, intron 1 of 3)	748	NM_015964	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
132503	chr2	106065071	106065880	+	0	NA	promoter-TSS (NM_032411)	promoter-TSS (NM_032411)	-213	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
209096	chr7	74876301	74876700	+	0	NA	Intergenic	AluSz|SINE|Alu	14112	NR_040584	442582		NM_001025202		STAG3L2	STAG3L1|STAG3L2P|STAG3L3	STAG3 cohesin complex component like 2 (pseudogene)	pseudo
76027	chr15	72168451	72168750	+	0	NA	intron (NM_001012642, intron 3 of 11)	intron (NM_001012642, intron 3 of 11)	29187	NM_001012642	196996		NM_001012642	ENSG00000175318	GRAMD2A	GRAMD2	GRAM domain containing 2A	protein-coding
111261	chr19	3535171	3535930	+	0	NA	3' UTR (NM_001136197, exon 11 of 11)	3' UTR (NM_001136197, exon 11 of 11)	-3607	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
66223	chr14	61324921	61325480	+	0	NA	intron (NM_006255, intron 1 of 13)	L1ME1|LINE|L1	3757	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
126640	chr2	28868451	28868930	+	0	NA	intron (NM_017910, intron 1 of 6)	intron (NM_017910, intron 1 of 6)	1619	NM_017910	55006		NM_017910	ENSG00000171103	TRMT61B	-	tRNA methyltransferase 61B	protein-coding
18308	chr1	161168171	161168330	+	0	NA	intron (NM_001365401, intron 4 of 11)	intron (NM_001365401, intron 4 of 11)	1604	NM_001365398	5498		NM_000309	ENSG00000143224	PPOX	PPO|V290M|VP|VPCO	protoporphyrinogen oxidase	protein-coding
233155	chr9	137172451	137173030	+	0	NA	promoter-TSS (NM_001282477)	promoter-TSS (NM_001282477)	-684	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
47279	chr12	1601321	1602430	+	0	NA	Intergenic	MIRb|SINE|MIR	-7294	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
149516	chr21	32768451	32768950	+	0	NA	intron (NM_016631, intron 2 of 17)	intron (NM_016631, intron 2 of 17)	3055	NM_013329	94104		NM_013329	ENSG00000159086	PAXBP1	BM020|C21orf66|FSAP105|GCFC|GCFC1	PAX3 and PAX7 binding protein 1	protein-coding
101714	chr17	68517171	68517780	+	0	NA	intron (NM_212471, intron 2 of 10)	THE1C|LTR|ERVL-MaLR	2081	NM_001276290	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
190078	chr5	177723901	177724300	+	0	NA	3' UTR (NM_173663, exon 21 of 21)	3' UTR (NM_173663, exon 21 of 21)	-51823	NR_026921	202181		NR_026921		SIMC1P1	-	SIMC1 pseudogene 1	pseudo
238713	chrX	154122451	154122750	+	0	NA	Intergenic	Intergenic	-21643	NM_020061	5956		NM_020061	ENSG00000102076	OPN1LW	CBBM|CBP|COD5|RCP|ROP	opsin 1, long wave sensitive	protein-coding
189685	chr5	176410871	176411030	+	0	NA	promoter-TSS (NM_001364126)	promoter-TSS (NM_001364126)	-127	NM_001364126	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
149831	chr21	35029121	35029630	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	10051	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
204209	chr7	2515371	2516150	+	0	NA	intron (NM_001166355, intron 2 of 8)	intron (NM_001166355, intron 2 of 8)	-2103	NM_002304	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
134207	chr2	134607971	134608130	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	110950	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
37691	chr11	28095801	28096600	+	0	NA	intron (NM_031217, intron 2 of 16)	Alu|SINE|Alu	11956	NM_031217	81930		NM_031217	ENSG00000121621	KIF18A	MS-KIF18A|PPP1R99	kinesin family member 18A	protein-coding
157949	chr22	49800721	49801230	+	0	NA	intron (NR_146335, intron 4 of 13)	intron (NR_146335, intron 4 of 13)	23356	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
27538	chr10	32323901	32324450	+	0	NA	intron (NR_168508, intron 1 of 12)	AluY|SINE|Alu	22983	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
168555	chr3	146577751	146577930	+	0	NA	intron (NM_001321245, intron 7 of 7)	intron (NM_001321245, intron 7 of 7)	28376	NM_001085420	389158		NM_001085420	ENSG00000231213	PLSCR5	-	phospholipid scramblase family member 5	protein-coding
236288	chrX	66426651	66426750	+	0	NA	Intergenic	L1PA3|LINE|L1	189330	NM_001242310	60401		NM_021783	ENSG00000131080	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
206522	chr7	34823671	34823950	+	0	NA	intron (NM_001300935, intron 4 of 9)	intron (NM_001300935, intron 4 of 9)	10521	NR_015356	404744		NM_207283	ENSG00000197085	NPSR1-AS1	AAA1	NPSR1 antisense RNA 1	ncRNA
64605	chr14	30558801	30560000	+	0	NA	intron (NM_001308097, intron 1 of 13)	CpG	242	NM_017769	55632		NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
35233	chr11	836221	837000	+	0	NA	intron (NM_001039490, intron 3 of 7)	intron (NM_001039490, intron 3 of 7)	3658	NM_139029	977		NM_004357	ENSG00000177697	CD151	EBS7|GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24	CD151 molecule (Raph blood group)	protein-coding
166346	chr3	112973221	112974490	+	0	NA	intron (NM_138939, intron 1 of 3)	intron (NM_138939, intron 1 of 3)	1248	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
90701	chr17	1764171	1765180	+	0	NA	intron (NM_001329903, intron 1 of 7)	intron (NM_001329903, intron 1 of 7)	1871	NM_001329903	5176		NM_002615	ENSG00000132386	SERPINF1	EPC-1|OI12|OI6|PEDF|PIG35	serpin family F member 1	protein-coding
219894	chr8	85663251	85663350	+	0	NA	promoter-TSS (NR_003594).2	promoter-TSS (NR_003594).2	-787	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
209068	chr7	74783551	74784130	+	0	NA	intron (NM_000265, intron 7 of 10)	intron (NM_000265, intron 7 of 10)	9878	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
229529	chr9	122827051	122827150	+	0	NA	intron (NM_005388, intron 1 of 3)	intron (NM_005388, intron 1 of 3)	1488	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
39137	chr11	49788651	49788750	+	0	NA	intron (NR_027044, intron 3 of 6)	Tigger1|DNA|TcMar-Tigger	-163691	NM_001001955	283092		NM_001001955	ENSG00000258817	OR4C13	-	olfactory receptor family 4 subfamily C member 13	protein-coding
34826	chr11	296561	296830	+	0	NA	TTS (NM_025092)	TTS (NM_025092)	2831	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
69208	chr14	92687871	92688300	+	0	NA	exon (NM_001319987, exon 9 of 9)	exon (NM_001319987, exon 9 of 9)	60542	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
186833	chr5	139414801	139415600	+	0	NA	intron (NM_152686, intron 7 of 7)	intron (NM_152686, intron 7 of 7)	-11111	NM_194296	202051		NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
27769	chr10	35343801	35344000	+	0	NA	intron (NM_001282852, intron 1 of 8)	intron (NM_001282852, intron 1 of 8)	7026	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
190934	chr6	2881351	2881950	+	0	NA	Intergenic	L1PBa1|LINE|L1	-2338	NR_110841	101927730		NR_110841		SERPINB9-AS1	-	SERPINB9 antisense RNA 1	ncRNA
26292	chr10	14953251	14955100	+	0	NA	promoter-TSS (NM_001350965)	promoter-TSS (NM_001350965)	-79	NM_001033858	64421		NM_022487	ENSG00000152457	DCLRE1C	A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C	DNA cross-link repair 1C	protein-coding
201730	chr6	149806121	149806380	+	0	NA	intron (NM_001360452, intron 7 of 7)	L2a|LINE|L2	56509	NM_001360456	5110		NM_005389	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
11484	chr1	90723151	90724080	+	0	NA	Intergenic	CpG	-6313	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
212384	chr7	128035851	128035950	+	0	NA	intron (NM_014390, intron 16 of 23)	intron (NM_014390, intron 16 of 23)	-4463	NM_022143	64101		NM_022143	ENSG00000128594	LRRC4	NAG14|NGL-2	leucine rich repeat containing 4	protein-coding
184697	chr5	108792251	108792550	+	0	NA	intron (NM_001308038, intron 3 of 7)	AluSp|SINE|Alu	43452	NM_001308028	2241		NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding
114948	chr19	13985221	13985790	+	0	NA	intron (NM_002918, intron 2 of 20)	MIR|SINE|MIR	20815	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
50443	chr12	47708871	47709130	+	0	NA	TTS (NM_001172439)	TTS (NM_001172439)	-2939	NM_001146075	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
5167	chr1	24928361	24929600	+	0	NA	intron (NM_001031680, intron 2 of 5)	intron (NM_001031680, intron 2 of 5)	1296	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
78773	chr15	99252401	99252650	+	0	NA	intron (NR_135755, intron 1 of 8)	intron (NR_135755, intron 1 of 8)	1044	NM_001321677	123355		NM_144598	ENSG00000168904	LRRC28	-	leucine rich repeat containing 28	protein-coding
198421	chr6	106084551	106085130	+	0	NA	Intergenic	Intergenic	-1496	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
183245	chr5	76401471	76403700	+	0	NA	promoter-TSS (NM_006633)	promoter-TSS (NM_006633)	-700	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
172056	chr4	1018651	1019500	+	0	NA	intron (NM_001370296, intron 2 of 6)	intron (NM_001370296, intron 2 of 6)	6611	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
214198	chr7	148564071	148564700	+	0	NA	Intergenic	LTR8|LTR|ERV1	-26381	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
30248	chr10	75108421	75109250	+	0	NA	intron (NM_001007271, intron 1 of 7)	intron (NM_001007271, intron 1 of 7)	356	NM_001320842	51207		NM_016364	ENSG00000079393	DUSP13B	DUSP13|MDSP|SKRP4|TMDP	dual specificity phosphatase 13B	protein-coding
156131	chr22	40113401	40114000	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	-64225	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
203901	chr7	1496351	1496680	+	0	NA	intron (NM_001080453, intron 11 of 47)	intron (NM_001080453, intron 11 of 47)	7874	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
44844	chr11	114099571	114099730	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	36439	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
238136	chrX	136710301	136711100	+	0	NA	intron (NM_004840, intron 7 of 21)	intron (NM_004840, intron 7 of 21)	57115	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
76199	chr15	73632371	73634530	+	0	NA	promoter-TSS (NM_012428)	promoter-TSS (NM_012428)	-61	NM_017455	27020		NM_012428	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
110306	chr19	1840951	1841050	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	7483	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
26561	chr10	21661551	21662230	+	0	NA	intron (NR_136736, intron 10 of 25)	L1MCa|LINE|L1	127658	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
138630	chr2	210172871	210173630	+	0	NA	Intergenic	MIRc|SINE|MIR	-1841	NM_152519	151050		NM_152519	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1 like	protein-coding
146130	chr20	48631451	48631780	+	0	NA	intron (NM_020820, intron 35 of 39)	intron (NM_020820, intron 35 of 39)	196384	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
218361	chr8	43089251	43089380	+	0	NA	Intergenic	AluSx|SINE|Alu	-4191	NM_001277971	84197		NM_032237	ENSG00000185900	POMK	MDDGA12|MDDGC12|SGK196	protein O-mannose kinase	protein-coding
126968	chr2	36246121	36247180	+	0	NA	Intergenic	Intergenic	108920	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
157588	chr22	45997321	45998280	+	0	NA	Intergenic	Intergenic	-8816	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
12686	chr1	109476751	109477050	+	0	NA	exon (NM_001040709, exon 4 of 6)	exon (NM_001040709, exon 4 of 6)	-7005	NM_153340	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
71970	chr15	25427071	25427780	+	0	NA	intron (NM_001354507, intron 1 of 14)	intron (NM_001354507, intron 1 of 14)	10804	NM_001354526	7337		NM_000462	ENSG00000114062	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A|PIX1	ubiquitin protein ligase E3A	protein-coding
97493	chr17	43879671	43879830	+	0	NA	intron (NM_001278381, intron 12 of 13)	intron (NM_001278381, intron 12 of 13)	20874	NM_001278376	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
17670	chr1	157697921	157698480	+	0	NA	intron (NM_052939, intron 4 of 14)	intron (NM_052939, intron 4 of 14)	2569	NR_135217	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
49440	chr12	24836371	24836600	+	0	NA	intron (NM_001178091, intron 7 of 9)	intron (NM_001178091, intron 7 of 9)	65737	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
203651	chr7	984771	985130	+	0	NA	exon (NM_017781, exon 3 of 9)	exon (NM_017781, exon 3 of 9)	1769	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
55438	chr12	104553251	104553650	+	0	NA	intron (NM_018413, intron 1 of 2)	MSTA|LTR|ERVL-MaLR	-38183	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
212230	chr7	121047721	121047800	+	0	NA	intron (NM_001105533, intron 3 of 17)	AluYj4|SINE|Alu	58369	NM_001105533	79974		NM_024913	ENSG00000106034	CPED1	C7orf58	cadherin like and PC-esterase domain containing 1	protein-coding
96296	chr17	39948571	39949550	+	0	NA	Intergenic	Intergenic	7586	NM_001195545	100505591		NM_001195545	ENSG00000204913	LRRC3C	-	leucine rich repeat containing 3C	protein-coding
157976	chr22	49825171	49825330	+	0	NA	promoter-TSS (NM_001349942)	promoter-TSS (NM_001349942)	650	NM_001304809	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
163084	chr3	50090701	50091500	+	0	NA	intron (NR_036627, intron 2 of 23)	intron (NR_036627, intron 2 of 23)	2181	NM_005778	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
209172	chr7	75362101	75362300	+	0	NA	intron (NR_040583, intron 4 of 9)	intron (NR_040583, intron 4 of 9)	3000	NR_040583	54441		NM_018991	ENSG00000290951	STAG3L1	STAG3L1P|STAG3L2|STAG3L3	STAG3 cohesin complex component like 1 (pseudogene)	pseudo
60291	chr13	40630971	40631130	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	35591	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
215593	chr7	158957471	158958550	+	0	NA	Intergenic	Intergenic	-50344	NR_024394	154822		NM_198345	ENSG00000231419	LINC00689	STORM	long intergenic non-protein coding RNA 689	ncRNA
187294	chr5	141595321	141595580	+	0	NA	intron (NM_005219, intron 1 of 27)	THE1D|LTR|ERVL-MaLR	23550	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
34051	chr10	124740821	124741930	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	3003	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
76397	chr15	74627801	74628600	+	0	NA	intron (NM_001130028, intron 10 of 12)	intron (NM_001130028, intron 10 of 12)	12364	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
78253	chr15	90815451	90815750	+	0	NA	3' UTR (NM_001287247, exon 20 of 20)	3' UTR (NM_001287247, exon 20 of 20)	-52988	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
171332	chr3	195993051	195993600	+	0	NA	Intergenic	Intergenic	-3046	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
68057	chr14	75252101	75253700	+	0	NA	Intergenic	AluJb|SINE|Alu	-25928	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
201366	chr6	144723551	144723850	+	0	NA	intron (NM_001375323, intron 3 of 24)	intron (NM_001375323, intron 3 of 24)	140552	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
232335	chr9	135439051	135439150	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	33149	NR_038969	100506599		NR_038969	ENSG00000225361	PPP1R26-AS1	-	PPP1R26 antisense RNA 1	ncRNA
93478	chr17	18885071	18885230	+	0	NA	intron (NM_001353102, intron 7 of 11)	AluJb|SINE|Alu	19681	NM_001243940	5636		NM_002767	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase associated protein 2	protein-coding
42469	chr11	69703401	69704000	+	0	NA	exon (NM_005117, exon 1 of 3)	exon (NM_005117, exon 1 of 3)	322	NM_005117	9965		NM_005117	ENSG00000162344	FGF19	-	fibroblast growth factor 19	protein-coding
223117	chr8	143468551	143468850	+	0	NA	intron (NM_015117, intron 5 of 11)	intron (NM_015117, intron 5 of 11)	37548	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
179323	chr4	181239971	181240500	+	0	NA	Intergenic	Intergenic	24794	NR_149139	101928679		NR_149139		LINC02500	-	long intergenic non-protein coding RNA 2500	ncRNA
166073	chr3	108841471	108841630	+	0	NA	intron (NM_001317747, intron 2 of 4)	intron (NM_001317747, intron 2 of 4)	18764	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
145509	chr20	43982721	43982980	+	0	NA	intron (NM_032883, intron 3 of 9)	intron (NM_032883, intron 3 of 9)	36954	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
226179	chr9	64757871	64758450	+	0	NA	Intergenic	Intergenic	-12794	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
179247	chr4	174420271	174420430	+	0	NA	Intergenic	Intergenic	-3445	NR_036236	100423042		NR_036236	ENSG00000265846	MIR4276	-	microRNA 4276	ncRNA
104765	chr17	81700121	81700900	+	0	NA	exon (NM_004712, exon 19 of 22)	exon (NM_004712, exon 19 of 22)	-2857	NM_002949	6182		NM_002949	ENSG00000262814	MRPL12	5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12|bL12m	mitochondrial ribosomal protein L12	protein-coding
152788	chr22	21818351	21819030	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	48955	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
32174	chr10	101568951	101569050	+	0	NA	Intergenic	Intergenic	19257	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
230033	chr9	127246421	127246680	+	0	NA	Intergenic	AluSx3|SINE|Alu	-17112	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
70616	chr14	102801621	102802280	+	0	NA	intron (NM_001199427, intron 1 of 7)	AluY|SINE|Alu	24471	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
15242	chr1	149605871	149606690	+	0	NA	promoter-TSS (NR_111951)	promoter-TSS (NR_111951)	-732	NR_111950	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
218867	chr8	60521801	60522600	+	0	NA	intron (NM_001242644, intron 1 of 6)	intron (NM_001242644, intron 1 of 6)	5213	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
99798	chr17	51263521	51263780	+	0	NA	intron (NM_016001, intron 2 of 13)	MIRb|SINE|MIR	3104	NM_016001	51096		NM_016001	ENSG00000011260	UTP18	CGI-48|WDR50	UTP18 small subunit processome component	protein-coding
155885	chr22	39518151	39518250	+	0	NA	TTS (NM_001304564)	TTS (NM_001304564)	-2359	NM_001675	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
63155	chr13	113624371	113624800	+	0	NA	intron (NR_026580, intron 4 of 10)	intron (NR_026580, intron 4 of 10)	33613	NM_000705	496		NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting subunit beta	protein-coding
53903	chr12	71441071	71441230	+	0	NA	intron (NM_001277226, intron 1 of 16)	intron (NM_001277226, intron 1 of 16)	1352	NM_001277227	8549		NM_003667	ENSG00000139292	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine rich repeat containing G protein-coupled receptor 5	protein-coding
182949	chr5	71215771	71216130	+	0	NA	intron (NR_146391, intron 3 of 9)	intron (NR_146391, intron 3 of 9)	-7819	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
7802	chr1	36254701	36254900	+	0	NA	intron (NM_001321471, intron 2 of 12)	Cheshire|DNA|hAT-Charlie	30357	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
168632	chr3	149808021	149808550	+	0	NA	Intergenic	L1MA4A|LINE|L1	-4403	NM_183383	11342		NM_007282	ENSG00000082996	RNF13	DEE73|EIEE73|RZF	ring finger protein 13	protein-coding
167424	chr3	129024721	129025650	+	0	NA	intron (NM_024768, intron 2 of 7)	L2c|LINE|L2	-21183	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
39339	chr11	59216821	59217080	+	0	NA	Intergenic	Intergenic	-4023	NM_001039396	219972		NM_001039396	ENSG00000197629	MPEG1	IMD77|MPG1|MPS1|Mpg-1|P-2	macrophage expressed 1	protein-coding
30951	chr10	87761821	87762100	+	0	NA	intron (NR_135914, intron 8 of 10)	AluJr4|SINE|Alu	56271	NM_001321968	84896		NM_032810	ENSG00000138138	ATAD1	AFDC1|FNP001|HKPX4|Msp1|THORASE|hATAD1	ATPase family AAA domain containing 1	protein-coding
112800	chr19	7490801	7491550	+	0	NA	Intergenic	L1MB5|LINE|L1	-1775	NM_001300881	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
108298	chr18	63339671	63340180	+	0	NA	intron (NM_002035, intron 7 of 9)	intron (NM_002035, intron 7 of 9)	-20156	NM_000657	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
60562	chr13	41496251	41496550	+	0	NA	Intergenic	Intergenic	38850	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
234468	chrX	17773051	17773700	+	0	NA	Intergenic	Intergenic	35882	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
185630	chr5	131519171	131519330	+	0	NA	intron (NM_016340, intron 7 of 27)	intron (NM_016340, intron 7 of 27)	115979	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
66706	chr14	64238971	64239200	+	0	NA	intron (NM_001271877, intron 4 of 5)	intron (NM_001271877, intron 4 of 5)	23131	NM_182910	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
13427	chr1	114269621	114269980	+	0	NA	Intergenic	Intergenic	-115931	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
5586	chr1	26010421	26010880	+	0	NA	Intergenic	AluY|SINE|Alu	-11125	NM_004455	2134		NM_004455	ENSG00000158008	EXTL1	EXTL	exostosin like glycosyltransferase 1	protein-coding
17409	chr1	156644951	156645130	+	0	NA	intron (NM_198427, intron 1 of 7)	intron (NM_198427, intron 1 of 7)	2923	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
153125	chr22	23715001	23715550	+	0	NA	intron (NR_024448, intron 1 of 11)	intron (NR_024448, intron 1 of 11)	2148	NR_024448	91316		NR_024448	ENSG00000228315	GUSBP11	-	GUSB pseudogene 11	pseudo
211635	chr7	106111531	106113000	+	0	NA	promoter-TSS (NM_001381911)	promoter-TSS (NM_001381911)	47	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
137703	chr2	197496901	197497580	+	0	NA	exon (NM_002156, exon 3 of 12)	exon (NM_002156, exon 3 of 12)	2600	NM_002156	3329		NM_002156	ENSG00000144381	HSPD1	CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13	heat shock protein family D (Hsp60) member 1	protein-coding
96485	chr17	40283221	40285130	+	0	NA	TTS (NM_133264)	TTS (NM_133264)	-3704	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
218438	chr8	47904471	47904630	+	0	NA	intron (NM_006904, intron 26 of 85)	AluSz6|SINE|Alu	55586	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
180945	chr5	34931671	34931830	+	0	NA	intron (NM_001012339, intron 1 of 11)	intron (NM_001012339, intron 1 of 11)	2191	NM_001348420	134218		NM_194283	ENSG00000168724	DNAJC21	BMFS3|DNAJA5|GS3|JJJ1	DnaJ heat shock protein family (Hsp40) member C21	protein-coding
141242	chr2	239658901	239659100	+	0	NA	Intergenic	Intergenic	-103860	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
95510	chr17	36488021	36490050	+	0	NA	intron (NM_001281434, intron 2 of 2)	L1MA5|LINE|L1	2354	NM_004773	9326		NM_004773	ENSG00000273611	ZNHIT3	Hit1|PEHO|TRIP3	zinc finger HIT-type containing 3	protein-coding
108266	chr18	63258801	63259500	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	60619	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
86254	chr16	58392001	58393600	+	0	NA	intron (NM_001126130, intron 1 of 1)	CpG	329	NM_022770	64785		NM_022770	ENSG00000181938	GINS3	PSF3	GINS complex subunit 3	protein-coding
31930	chr10	100561621	100562450	+	0	NA	Intergenic	Intergenic	26092	NM_017902	55662		NM_017902	ENSG00000166135	HIF1AN	FIH1	hypoxia inducible factor 1 subunit alpha inhibitor	protein-coding
200201	chr6	131198751	131198950	+	0	NA	intron (NR_164834, intron 5 of 9)	L1MEc|LINE|L1	-51554	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
236794	chrX	79146351	79147130	+	0	NA	intron (NM_032553, intron 1 of 2)	intron (NM_032553, intron 1 of 2)	2052	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
125843	chr2	24416801	24417000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-56364	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
222556	chr8	140609401	140610380	+	0	NA	intron (NM_012154, intron 1 of 18)	Alu|SINE|Alu	25743	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
173687	chr4	15396221	15396550	+	0	NA	intron (NM_001135171, intron 1 of 2)	intron (NM_001135171, intron 1 of 2)	21834	NM_001135171	114905		NM_031911	ENSG00000163145	C1QTNF7	CTRP7|ZACRP7	C1q and TNF related 7	protein-coding
194903	chr6	34698351	34698650	+	0	NA	Intergenic	AluJo|SINE|Alu	1555	NR_134626	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
97075	chr17	42385201	42385750	+	0	NA	intron (NM_001369516, intron 1 of 23)	AluSx1|SINE|Alu	2967	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
149337	chr21	29056501	29056700	+	0	NA	intron (NM_006585, intron 14 of 14)	intron (NM_006585, intron 14 of 14)	17048	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
150487	chr21	42678051	42678150	+	0	NA	intron (NM_001001580, intron 1 of 13)	intron (NM_001001580, intron 1 of 13)	24348	NM_001001580	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
86432	chr16	66887971	66888130	+	0	NA	3' UTR (NM_001329928, exon 3 of 3)	3' UTR (NM_001329928, exon 3 of 3)	7535	NM_020786	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
234496	chrX	19194351	19194700	+	0	NA	Intergenic	L1ME3A|LINE|L1	-71888	NM_001184833	10149		NM_005756	ENSG00000173698	ADGRG2	CBAVDX|EDDM6|GPR64|HE6|TM7LN2	adhesion G protein-coupled receptor G2	protein-coding
148943	chr21	10123771	10124630	+	0	NA	Intergenic	GSATII|Satellite|centr	-289297	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
84716	chr16	30891901	30892100	+	0	NA	intron (NR_110940, intron 2 of 2)	AluJo|SINE|Alu	-1903	NR_031576	100313837		NR_031576	ENSG00000211591	MIR762	hsa-mir-762	microRNA 762	ncRNA
67648	chr14	73070721	73070980	+	0	NA	intron (NM_021239, intron 1 of 18)	AluSc|SINE|Alu	12316	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
38733	chr11	46847301	46847500	+	0	NA	intron (NR_038909, intron 2 of 2)	AluJr|SINE|Alu	989	NR_038909	100507401		NR_038909	ENSG00000247675	LRP4-AS1	-	LRP4 antisense RNA 1	ncRNA
47759	chr12	6542301	6542900	+	0	NA	intron (NM_001039670, intron 8 of 9)	intron (NM_001039670, intron 8 of 9)	7336	NM_001256799	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
194653	chr6	33618721	33619530	+	0	NA	Intergenic	Charlie15a|DNA|hAT-Charlie	-2197	NM_002224	3710		NM_002224	ENSG00000096433	ITPR3	CMT1J|IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding
193380	chr6	30346351	30346930	+	0	NA	intron (NM_001199121, intron 4 of 4).2	intron (NM_001199121, intron 4 of 4).2	1484	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
107561	chr18	48812751	48812850	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	130007	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
217060	chr8	23423301	23423700	+	0	NA	Intergenic	Intergenic	-19380	NM_002318	4017		NM_002318	ENSG00000134013	LOXL2	LOR|LOR2|WS9-14	lysyl oxidase like 2	protein-coding
200080	chr6	130148271	130148780	+	0	NA	intron (NM_001258275, intron 11 of 13)	L1MC4|LINE|L1	67360	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
110581	chr19	2156951	2157050	+	0	NA	Intergenic	Intergenic	-5434	NM_001261826	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
236693	chrX	77776771	77777300	+	0	NA	intron (NM_138270, intron 1 of 33)	MER58A|DNA|hAT-Charlie	9181	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
5398	chr1	25492901	25493500	+	0	NA	intron (NM_001282564, intron 8 of 8)	Charlie1b|DNA|hAT-Charlie	-50406	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
207252	chr7	43865371	43865730	+	0	NA	Intergenic	(GGTCAG)n|Simple_repeat|Simple_repeat	3967	NM_032014	64951		NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
196456	chr6	43511971	43512130	+	0	NA	3' UTR (NM_015388, exon 9 of 9)	3' UTR (NM_015388, exon 9 of 9)	-1704	NM_001271882	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
220628	chr8	100938521	100939230	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	11696	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
79177	chr16	303671	304200	+	0	NA	intron (NM_181050, intron 5 of 9)	intron (NM_181050, intron 5 of 9)	20771	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
234837	chrX	24468021	24468600	+	0	NA	intron (NM_001142386, intron 1 of 11)	MER20|DNA|hAT-Charlie	3024	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
75086	chr15	64390371	64390730	+	0	NA	intron (NM_001321924, intron 1 of 12)	Charlie15b|DNA|hAT-Charlie	2714	NM_016213	9325		NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5	thyroid hormone receptor interactor 4	protein-coding
182588	chr5	65987301	65987500	+	0	NA	intron (NM_001253697, intron 1 of 25)	AluJb|SINE|Alu	-41827	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
104839	chr17	81832801	81834750	+	0	NA	promoter-TSS (NM_001288798)	promoter-TSS (NM_001288798)	-484	NM_001288799	348262		NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
137604	chr2	197292471	197293060	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	9754	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
173719	chr4	15808871	15809300	+	0	NA	intron (NR_132660, intron 1 of 6)	MIRb|SINE|MIR	30757	NR_132660	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
194754	chr6	33922371	33922930	+	0	NA	Intergenic	Intergenic	23515	NR_106982	102466816		NR_106982	ENSG00000276824	MIR7159	hsa-mir-7159	microRNA 7159	ncRNA
154642	chr22	36328771	36329900	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-42428	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
230339	chr9	128007401	128009280	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-27351	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
73680	chr15	44783821	44785180	+	0	NA	Intergenic	LTR13|LTR|ERVK	47972	NM_001301145	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
100337	chr17	59889421	59889680	+	0	NA	intron (NM_001193610, intron 2 of 7)	AluSz|SINE|Alu	3393	NM_016261	51174		NM_016261	ENSG00000108423	TUBD1	TUBD	tubulin delta 1	protein-coding
118109	chr19	34482421	34483050	+	0	NA	intron (NM_001080436, intron 1 of 7)	CpG	977	NM_001080436	126374		NM_001080436	ENSG00000142279	WTIP	-	WT1 interacting protein	protein-coding
209404	chr7	76332321	76332580	+	0	NA	intron (NM_012479, intron 1 of 1)	MIRc|SINE|MIR	26541	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
176777	chr4	102493501	102494080	+	0	NA	intron (NR_136202, intron 1 of 4)	intron (NR_136202, intron 1 of 4)	-7569	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
46551	chr11	128481521	128481780	+	0	NA	intron (NM_001162422, intron 1 of 3)	intron (NM_001162422, intron 1 of 3)	40660	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
201398	chr6	145823551	145823850	+	0	NA	intron (NR_038244, intron 1 of 3)	intron (NR_038244, intron 1 of 3)	8824	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
72515	chr15	34061901	34062550	+	0	NA	intron (NM_012125, intron 2 of 2)	intron (NM_012125, intron 2 of 2)	-23021	NM_020371	57099		NM_020371	ENSG00000169857	AVEN	PDCD12	apoptosis and caspase activation inhibitor	protein-coding
94143	chr17	28335001	28336880	+	0	NA	promoter-TSS (NM_001267777)	promoter-TSS (NM_001267777)	179	NM_021137	7126		NM_021137	ENSG00000109079	TNFAIP1	B12|B61|BTBD34|EDP1|hBACURD2	TNF alpha induced protein 1	protein-coding
190162	chr5	178132551	178133300	+	0	NA	intron (NM_022762, intron 2 of 10)	AluSg|SINE|Alu	1911	NM_022762	64777		NM_022762	ENSG00000145916	RMND5B	GID2|GID2B	required for meiotic nuclear division 5 homolog B	protein-coding
69186	chr14	92657421	92658250	+	0	NA	intron (NM_024832, intron 6 of 9)	intron (NM_024832, intron 6 of 9)	81601	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
65077	chr14	39427771	39427930	+	0	NA	intron (NM_203301, intron 1 of 3)	AluJr|SINE|Alu	4650	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
35315	chr11	1031921	1032380	+	0	NA	intron (NM_005961, intron 2 of 32)	intron (NM_005961, intron 2 of 32)	4568	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
81918	chr16	11740551	11741180	+	0	NA	intron (NR_136674, intron 1 of 8)	intron (NR_136674, intron 1 of 8)	1992	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
50819	chr12	49093871	49094230	+	0	NA	intron (NM_021044, intron 1 of 2)	intron (NM_021044, intron 1 of 2)	751	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
179029	chr4	165131121	165131900	+	0	NA	Intergenic	Intergenic	-18650	NM_001100389	201931		NM_152681	ENSG00000170088	TMEM192	-	transmembrane protein 192	protein-coding
166379	chr3	113276171	113276330	+	0	NA	intron (NM_033254, intron 9 of 19)	intron (NM_033254, intron 9 of 19)	64134	NM_001301861	91653		NM_033254	ENSG00000144857	BOC	Boi|CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
75273	chr15	65048671	65048830	+	0	NA	intron (NM_178859, intron 1 of 3)	AluSx|SINE|Alu	3363	NM_178859	123264		NM_178859	ENSG00000186198	SLC51B	OSTB|OSTBETA|PBAM2|SLC51A1BP	SLC51 subunit beta	protein-coding
142486	chr20	4682971	4683130	+	0	NA	Intergenic	L2|LINE|L2	-3406	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
193234	chr6	29896951	29897250	+	0	NA	Intergenic	Intergenic	9527	NR_001434	3136		NR_001434		HLA-H	HLAHP	major histocompatibility complex, class I, H (pseudogene)	pseudo
137954	chr2	201136951	201137630	+	0	NA	3' UTR (NM_001308043, exon 5 of 5)	3' UTR (NM_001308043, exon 5 of 5)	-2985	NM_001202515	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
163317	chr3	50362601	50362800	+	0	NA	TTS (NM_001005505)	TTS (NM_001005505)	-2663	NR_111914	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
47601	chr12	5003071	5003250	+	0	NA	Intergenic	Intergenic	-40719	NM_002234	3741		NM_002234	ENSG00000130037	KCNA5	ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1	potassium voltage-gated channel subfamily A member 5	protein-coding
97999	chr17	45304001	45304430	+	0	NA	intron (NM_003954, intron 1 of 15)	AluSx1|SINE|Alu	12805	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
55076	chr12	96719821	96720580	+	0	NA	intron (NM_001367885, intron 50 of 68)	intron (NM_001367885, intron 50 of 68)	-187057	NM_152905	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
59187	chr13	22065721	22066000	+	0	NA	Intergenic	Intergenic	-144425	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
54049	chr12	75939121	75939580	+	0	NA	Intergenic	Intergenic	92426	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
79717	chr16	1316951	1317650	+	0	NA	intron (NM_194259, intron 5 of 7)	L1M5|LINE|L1	7664	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
176621	chr4	99562121	99562380	+	0	NA	intron (NM_001375882, intron 1 of 7)	intron (NM_001375882, intron 1 of 7)	1473	NM_152292	93587		NM_152292	ENSG00000145331	TRMT10A	HEL-S-88|MSSGM|MSSGM1|RG9MTD2|TRM10	tRNA methyltransferase 10A	protein-coding
203915	chr7	1509401	1509880	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5251	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
191446	chr6	10693151	10693250	+	0	NA	intron (NR_148870, intron 1 of 3).2	LTR10E|LTR|ERV1	1409	NM_001145020	347744		NM_001145020	ENSG00000137434	C6orf52	-	chromosome 6 open reading frame 52	protein-coding
96582	chr17	40501621	40501880	+	0	NA	promoter-TSS (NM_032865)	promoter-TSS (NM_032865)	-127	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
136975	chr2	190436571	190436730	+	0	NA	exon (NM_001375992, exon 3 of 9)	exon (NM_001375992, exon 3 of 9)	27792	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
19019	chr1	169649971	169650330	+	0	NA	Intergenic	L1MC1|LINE|L1	-20026	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
7397	chr1	32930751	32931050	+	0	NA	Intergenic	AluSz|SINE|Alu	-29511	NM_001329723	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
175240	chr4	56983471	56983630	+	0	NA	intron (NM_001303268, intron 1 of 23)	AluSg|SINE|Alu	4654	NM_000938	5431		NM_000938	ENSG00000047315	POLR2B	POL2RB|RPB2|hRPB140	RNA polymerase II subunit B	protein-coding
137260	chr2	193475821	193476450	+	0	NA	Intergenic	LTR77|LTR|ERV1	726290	NR_152587	64002		NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1 prostate-specific transcript	ncRNA
96318	chr17	39997271	39998300	+	0	NA	3' UTR (NM_002809, exon 12 of 12)	3' UTR (NM_002809, exon 12 of 12)	16978	NM_002809	5709		NM_002809	ENSG00000108344	PSMD3	P58|RPN3|S3|TSTA2	proteasome 26S subunit, non-ATPase 3	protein-coding
216797	chr8	22548801	22549100	+	0	NA	Intergenic	Intergenic	-2977	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
55283	chr12	102965551	102965650	+	0	NA	Intergenic	CpG	-7159	NM_001354304	5053		NM_000277	ENSG00000171759	PAH	PH|PKU|PKU1	phenylalanine hydroxylase	protein-coding
195623	chr6	37782851	37783150	+	0	NA	Intergenic	Intergenic	-36727	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
157872	chr22	49660351	49661400	+	0	NA	Intergenic	Intergenic	-3356	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
120259	chr19	42480871	42481030	+	0	NA	intron (NR_073179, intron 1 of 1)	LOR1b|LTR|ERV1	-38004	NR_133910	284340		NM_198477	ENSG00000189377	CXCL17	DMC|Dcip1|UNQ473|VCC-1|VCC1	C-X-C motif chemokine ligand 17	protein-coding
30576	chr10	80046921	80047250	+	0	NA	non-coding (NR_027428, exon 6 of 6)	non-coding (NR_027428, exon 6 of 6)	-31561	NM_001270372	80195		NM_025125	ENSG00000133678	TMEM254	C10orf57|bA369J21.6	transmembrane protein 254	protein-coding
225346	chr9	34645471	34645630	+	0	NA	Intergenic	Intergenic	-1039	NM_001258332	2592		NM_000155	ENSG00000213930	GALT	-	galactose-1-phosphate uridylyltransferase	protein-coding
53670	chr12	68439401	68439600	+	0	NA	intron (NR_120458, intron 2 of 3)	Plat_L3|LINE|CR1	11984	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
62853	chr13	110385471	110385830	+	0	NA	intron (NM_001846, intron 4 of 47)	intron (NM_001846, intron 4 of 47)	44692	NR_107040	102465872		NR_107040	ENSG00000276765	MIR8073	hsa-mir-8073	microRNA 8073	ncRNA
63333	chr13	114017051	114017680	+	0	NA	intron (NM_001320822, intron 11 of 23).2	CpG-7010	-43289	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
36647	chr11	7985321	7985580	+	0	NA	Intergenic	Intergenic	-1887	NM_003754	8665		NM_003754	ENSG00000175390	EIF3F	EIF3S5|MRT67|eIF3-p47	eukaryotic translation initiation factor 3 subunit F	protein-coding
86535	chr16	67172251	67172750	+	0	NA	intron (NM_001276312, intron 2 of 5)	AluSx3|SINE|Alu	-1353	NM_001185057	8996		NM_003946	ENSG00000140939	NOL3	ARC|FCM|MYOCL1|MYP|NOP|NOP30	nucleolar protein 3	protein-coding
200493	chr6	135495271	135495730	+	0	NA	intron (NM_001134830, intron 1 of 26)	L2c|LINE|L2	2240	NM_001134831	54806		NM_017651	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
219138	chr8	66117851	66118150	+	0	NA	Intergenic	AluYm1|SINE|Alu	-9129	NM_184086	84675		NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
117957	chr19	33261301	33261500	+	0	NA	Intergenic	Intergenic	-35550	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
61564	chr13	67229551	67229650	+	0	NA	intron (NM_203487, intron 1 of 4)	intron (NM_203487, intron 1 of 4)	736	NM_020403	5101		NM_020403	ENSG00000184226	PCDH9	-	protocadherin 9	protein-coding
230500	chr9	128253801	128254400	+	0	NA	3' UTR (NM_001288738, exon 23 of 23)	3' UTR (NM_001288738, exon 23 of 23)	-9070	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
50949	chr12	49529701	49530100	+	0	NA	Intergenic	AluY|SINE|Alu	-9130	NM_001314030	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
146252	chr20	48910101	48911200	+	0	NA	Intergenic	MER66C|LTR|ERV1	-11061	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
81848	chr16	11598551	11598650	+	0	NA	Intergenic	Intergenic	-11134	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
189637	chr5	176045321	176045650	+	0	NA	Intergenic	L1M5|LINE|L1	16570	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
26586	chr10	22022001	22023150	+	0	NA	Intergenic	Intergenic	-18845	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
35488	chr11	1514671	1514830	+	0	NA	Intergenic	Intergenic	-27971	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
131103	chr2	89838901	89839100	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-201093	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
34763	chr11	198721	199180	+	0	NA	intron (NM_001286136, intron 5 of 5)	L2a|LINE|L2	2189	NM_053280	113746		NM_053280	ENSG00000177947	CIMAP1A	CT135|ODF3|SHIPPO1|TISP50	ciliary microtubule associated protein 1A	protein-coding
212152	chr7	116802721	116803100	+	0	NA	Intergenic	Intergenic	-59677	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
208104	chr7	56816571	56816930	+	0	NA	Intergenic	Intergenic	-4014	NR_130727	401357		NR_130727		LOC401357	-	uncharacterized LOC401357	ncRNA
119409	chr19	40266901	40267300	+	0	NA	intron (NM_001243027, intron 1 of 13)	L2c|LINE|L2	-1749	NM_001330511	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
12661	chr1	109274601	109274800	+	0	NA	3' UTR (NM_001408, exon 34 of 34)	3' UTR (NM_001408, exon 34 of 34)	8444	NM_001350237	84722		NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
84176	chr16	29815401	29818030	+	0	NA	TTS (NM_001256443)	TTS (NM_001256443)	563	NM_024516	79447		NM_024516	ENSG00000280789	PAGR1	C16orf53|GAS|PA1	PAXIP1 associated glutamate rich protein 1	protein-coding
192282	chr6	20424351	20424450	+	0	NA	intron (NM_001243076, intron 1 of 6)	(GT)n|Simple_repeat|Simple_repeat	20721	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
117607	chr19	22215771	22215930	+	0	NA	Intergenic	Intergenic	-18899	NM_001001411	163223		NM_001001411	ENSG00000196109	ZNF676	-	zinc finger protein 676	protein-coding
81141	chr16	4401871	4402030	+	0	NA	intron (NM_001351729, intron 6 of 27)	AluSx|SINE|Alu	13947	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
85149	chr16	46393471	46393630	+	0	NA	Intergenic	(GAATGGAATC)n|Simple_repeat|Simple_repeat	175547	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
214834	chr7	151254121	151254980	+	0	NA	intron (NM_001003802, intron 2 of 13)	intron (NM_001003802, intron 2 of 13)	-5856	NM_001003801	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
92321	chr17	8136171	8137030	+	0	NA	Intergenic	L2a|LINE|L2	8471	NR_106943	102465532		NR_106943	ENSG00000284117	MIR6883	hsa-mir-6883	microRNA 6883	ncRNA
173552	chr4	10087551	10088050	+	0	NA	exon (NM_005112, exon 5 of 12)	exon (NM_005112, exon 5 of 12)	-9108	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
29094	chr10	68088901	68089100	+	0	NA	Intergenic	L1MB8|LINE|L1	-13717	NM_001278185	26091		NM_015601	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
32222	chr10	101814521	101815130	+	0	NA	intron (NM_001142434, intron 1 of 14)	intron (NM_001142434, intron 1 of 14)	3619	NM_012215	10724		NM_012215	ENSG00000198408	OGA	MEA5|MGEA5|NCOAT	O-GlcNAcase	protein-coding
135118	chr2	157415701	157416230	+	0	NA	exon (NM_004288, exon 8 of 8)	exon (NM_004288, exon 8 of 8)	28124	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
192913	chr6	27665071	27665230	+	0	NA	Intergenic	AluSc8|SINE|Alu	-28885	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
187439	chr5	142097621	142099100	+	0	NA	Intergenic	MER34C_|LTR|ERV1	-10419	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
72412	chr15	31433101	31433500	+	0	NA	intron (NM_001302461, intron 1 of 1).3	L1MEc|LINE|L1	106465	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
195724	chr6	39153821	39154080	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-38764	NM_001304793	55776		NM_018322	ENSG00000112167	SAYSD1	C6orf64	SAYSVFN motif domain containing 1	protein-coding
227980	chr9	95336321	95336580	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-18741	NM_000136	2176		NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	FA complementation group C	protein-coding
126725	chr2	30187221	30187780	+	0	NA	promoter-TSS (NR_145719)	promoter-TSS (NR_145719)	66	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
238864	chrX	154515801	154517400	+	0	NA	promoter-TSS (NM_001363822)	promoter-TSS (NM_001363822)	-358	NM_001171134	60343		NM_021806	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	FAM3 metabolism regulating signaling molecule A	protein-coding
49958	chr12	40181421	40181750	+	0	NA	Intergenic	MER72|LTR|ERV1	25346	NR_146526	105369734		NR_146526		LINC02471	-	long intergenic non-protein coding RNA 2471	ncRNA
144891	chr20	36932221	36933500	+	0	NA	intron (NM_001363733, intron 4 of 15)	L1MB2|LINE|L1	18848	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
101863	chr17	74211471	74211630	+	0	NA	TTS (NM_001035258)	TTS (NM_001035258)	1771	NR_026914	85001		NM_032915	ENSG00000246731	MGC16275	-	uncharacterized protein MGC16275	ncRNA
63654	chr14	20989051	20990780	+	0	NA	promoter-TSS (NM_001029991)	promoter-TSS (NM_001029991)	-65	NM_001029991	64745		NM_022734	ENSG00000165792	METTL17	METT11D1	methyltransferase like 17	protein-coding
145330	chr20	41094251	41094680	+	0	NA	intron (NM_003286, intron 9 of 20)	intron (NM_003286, intron 9 of 20)	-43078	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
174062	chr4	26914421	26914680	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	53709	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
193499	chr6	30565221	30565480	+	0	NA	Intergenic	AluY|SINE|Alu	-6092	NM_001090	23		NM_001090	ENSG00000204574	ABCF1	ABC27|ABC50	ATP binding cassette subfamily F member 1	protein-coding
46976	chr11	135076451	135076600	+	0	NA	Intergenic	TAR1|Satellite|telo	91173	NR_135050	100507548		NR_135050		LOC100507548	-	uncharacterized LOC100507548	ncRNA
162032	chr3	46683971	46684330	+	0	NA	intron (NM_147129, intron 7 of 25)	intron (NM_147129, intron 7 of 25)	9529	NM_147129	259173		NM_147129	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
163661	chr3	52216701	52217600	+	0	NA	Intergenic	Intergenic	9013	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
56707	chr12	120093271	120093430	+	0	NA	non-coding (NR_147892, exon 12 of 12)	non-coding (NR_147892, exon 12 of 12)	23403	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
5520	chr1	25795951	25797350	+	0	NA	Intergenic	L2b|LINE|L2	-3543	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
155004	chr22	37324151	37324450	+	0	NA	Intergenic	Intergenic	30539	NR_110515	100506271		NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA
204036	chr7	1934671	1934830	+	0	NA	intron (NM_001304524, intron 15 of 16)	CpG	5821	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
155331	chr22	38219801	38220000	+	0	NA	3' UTR (NM_012264, exon 9 of 9)	3' UTR (NM_012264, exon 9 of 9)	4820	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
21407	chr1	205293851	205294150	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	27745	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
222471	chr8	140097301	140097580	+	0	NA	non-coding (NR_144431, exon 1 of 1)	non-coding (NR_144431, exon 1 of 1)	3095	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
208472	chr7	66994401	66996000	+	0	NA	intron (NM_016038, intron 1 of 4)	CpG	386	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
154890	chr22	37156621	37156880	+	0	NA	intron (NM_001346222, intron 1 of 9)	MLT1J|LTR|ERVL-MaLR	-6834	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
114810	chr19	13802671	13803230	+	0	NA	intron (NM_023072, intron 2 of 12)	intron (NM_023072, intron 2 of 12)	7507	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
15035	chr1	148363421	148364150	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1252	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
41343	chr11	65927651	65929030	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	8914	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
175573	chr4	75649851	75650500	+	0	NA	intron (NM_203504, intron 7 of 10)	AluSp|SINE|Alu	-19647	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
79925	chr16	1734851	1735450	+	0	NA	TTS (NR_036138)	TTS (NR_036138)	165	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
60465	chr13	41074821	41075400	+	0	NA	intron (NM_007187, intron 7 of 9)	MER94|DNA|hAT-Blackjack	13601	NM_007187	11193		NM_007187	ENSG00000120688	WBP4	FBP21	WW domain binding protein 4	protein-coding
145284	chr20	41026071	41026830	+	0	NA	Intergenic	L2a|LINE|L2	-2372	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
232881	chr9	136835051	136835150	+	0	NA	TTS (NM_001173989)	TTS (NM_001173989)	4143	NR_036251	100422860		NR_036251	ENSG00000265806	MIR4292	-	microRNA 4292	ncRNA
9457	chr1	50423421	50424930	+	0	NA	promoter-TSS (NM_032110)	promoter-TSS (NM_032110)	-732	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
142722	chr20	9408171	9408330	+	0	NA	intron (NM_001172646, intron 21 of 37)	intron (NM_001172646, intron 21 of 37)	-106108	NM_001199897	24141		NM_012261	ENSG00000125869	LAMP5	BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46	lysosomal associated membrane protein family member 5	protein-coding
22953	chr1	225998921	226000650	+	0	NA	promoter-TSS (NM_152608)	promoter-TSS (NM_152608)	-442	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
53521	chr12	66901251	66901930	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-97321	NM_001379348	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
122255	chr19	49033501	49034080	+	0	NA	TTS (NM_001319065)	TTS (NM_001319065)	1900	NM_033378	114336		NM_033378	ENSG00000104818	CGB2	-	chorionic gonadotropin subunit beta 2	protein-coding
32714	chr10	104227951	104228050	+	0	NA	intron (NM_025145, intron 2 of 37)	AluSc5|SINE|Alu	4364	NM_025145	80217		NM_025145	ENSG00000197748	CFAP43	C10orf79|HYDNP1|SPGF19|WDR96|bA373N18.2	cilia and flagella associated protein 43	protein-coding
110233	chr19	1768571	1769380	+	0	NA	intron (NM_001080488, intron 1 of 1)	(TGGAGG)n|Simple_repeat|Simple_repeat	15469	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
60490	chr13	41278321	41278580	+	0	NA	intron (NM_001354073, intron 1 of 14)	MER51B|LTR|ERV1	-14874	NM_004294	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
58056	chr12	124495371	124495880	+	0	NA	intron (NM_001077261, intron 2 of 47)	intron (NM_001077261, intron 2 of 47)	71987	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
27618	chr10	32932451	32932750	+	0	NA	exon (NM_002211, exon 3 of 16)	exon (NM_002211, exon 3 of 16)	2958	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
165146	chr3	71858821	71859400	+	0	NA	Intergenic	Intergenic	-73962	NM_021935	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
163805	chr3	52408751	52408850	+	0	NA	intron (NM_004656, intron 3 of 16)	intron (NM_004656, intron 3 of 16)	1208	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
208565	chr7	72818571	72819130	+	0	NA	intron (NM_001145440, intron 2 of 13)	MSTA|LTR|ERVL-MaLR	9350	NM_001145440	441250		NM_001145440	ENSG00000277149	TYW1B	LINC00069|NCRNA00069|RSAFD2	tRNA-yW synthesizing protein 1 homolog B	protein-coding
32675	chr10	103910171	103911680	+	0	NA	intron (NM_024928, intron 2 of 9)	intron (NM_024928, intron 2 of 9)	7259	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
105481	chr17	83073271	83074200	+	0	NA	Intergenic	Intergenic	-5874	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
196571	chr6	44133251	44133830	+	0	NA	intron (NM_018426, intron 1 of 23)	intron (NM_018426, intron 1 of 23)	5986	NM_018426	55362		NM_018426	ENSG00000137216	TMEM63B	C6orf110	transmembrane protein 63B	protein-coding
169058	chr3	153242821	153243480	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	80924	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
6943	chr1	31746651	31747580	+	0	NA	intron (NM_001294336, intron 4 of 31)	L2b|LINE|L2	11620	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
239391	chrY	21256071	21256230	+	0	NA	Intergenic	L1PB4|LINE|L1	130210	NM_001282471	100533178		NM_001282471		PRORY	CYorf17	PRORY Y-linked lncRNA	ncRNA
174178	chr4	36303721	36304180	+	0	NA	intron (NR_165630, intron 5 of 10)	MLT1I|LTR|ERVL-MaLR	22334	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
232387	chr9	135966701	135966900	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-5427	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
102389	chr17	75578301	75578700	+	0	NA	Intergenic	AluJr|SINE|Alu	-9558	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
126892	chr2	32360001	32360450	+	0	NA	intron (NM_016252, intron 1 of 73)	intron (NM_016252, intron 1 of 73)	3009	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
178656	chr4	152458621	152459650	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	30281	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
1798	chr1	6180201	6181530	+	0	NA	promoter-TSS (NM_015557)	promoter-TSS (NM_015557)	-544	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
147522	chr20	59235271	59235430	+	0	NA	intron (NM_178457, intron 4 of 5)	intron (NM_178457, intron 4 of 5)	-65261	NM_207032	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
182872	chr5	69871701	69872130	+	0	NA	intron (NR_029426, intron 1 of 9).2	intron (NR_029426, intron 1 of 9).2	27103	NR_029426	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
7168	chr1	32252221	32252480	+	0	NA	intron (NM_005356, intron 1 of 12)	intron (NM_005356, intron 1 of 12)	1085	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
58783	chr12	132732451	132732550	+	0	NA	intron (NM_015114, intron 10 of 12)	CpG	21658	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
155496	chr22	38631571	38631930	+	0	NA	intron (NM_001384271, intron 5 of 14)	intron (NM_001384271, intron 5 of 14)	24642	NM_001013647	646851		NM_001013647	ENSG00000184949	FAM227A	-	family with sequence similarity 227 member A	protein-coding
115416	chr19	15298621	15299180	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-18449	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
145766	chr20	45346421	45346900	+	0	NA	intron (NM_002999, intron 1 of 4)	intron (NM_002999, intron 1 of 4)	1764	NM_002999	6385		NM_002999	ENSG00000124145	SDC4	SYND4	syndecan 4	protein-coding
78113	chr15	90305721	90305980	+	0	NA	Intergenic	Intergenic	-40091	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
49241	chr12	19431721	19432180	+	0	NA	Intergenic	Intergenic	-7542	NM_153207	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
29324	chr10	69391051	69391350	+	0	NA	intron (NM_033498, intron 17 of 20)	intron (NM_033498, intron 17 of 20)	25718	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
40014	chr11	62655321	62655580	+	0	NA	Intergenic	Intergenic	-2148	NM_030628	80789		NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
213332	chr7	135281421	135282080	+	0	NA	Intergenic	Intergenic	49771	NM_182489	346673		NM_182489	ENSG00000146857	STRA8	-	stimulated by retinoic acid 8	protein-coding
178906	chr4	158653701	158653900	+	0	NA	TTS (NM_001363776)	TTS (NM_001363776)	18087	NM_001008393	201725		NM_001008393	ENSG00000205208	C4orf46	RCDG1	chromosome 4 open reading frame 46	protein-coding
132030	chr2	100924371	100925130	+	0	NA	intron (NM_002518, intron 2 of 20)	intron (NM_002518, intron 2 of 20)	52411	NR_110213	101927142		NR_110213		NPAS2-AS1	-	NPAS2 antisense RNA 1	ncRNA
92091	chr17	7564301	7564500	+	0	NA	intron (NM_015670, intron 2 of 10)	intron (NM_015670, intron 2 of 10)	2408	NR_037926	100533955		NR_037926		SENP3-EIF4A1	-	SENP3-EIF4A1 readthrough (NMD candidate)	ncRNA
90659	chr17	1682401	1683150	+	0	NA	intron (NM_006445, intron 3 of 42)	intron (NM_006445, intron 3 of 42)	2092	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
109899	chr19	1278801	1279000	+	0	NA	3' UTR (NM_017914, exon 3 of 3)	3' UTR (NM_017914, exon 3 of 3)	3370	NM_017914	55009		NM_017914	ENSG00000228300	FAM174C	C19orf24	family with sequence similarity 174 member C	protein-coding
3864	chr1	16971501	16972350	+	0	NA	intron (NM_014675, intron 36 of 36)	MLT1K|LTR|ERVL-MaLR	8695	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
208	chr1	778221	779850	+	0	NA	promoter-TSS (NR_168328)	promoter-TSS (NR_168328)	-401	NR_168328	100288069		NR_168328		LOC100288069	-	uncharacterized LOC100288069	ncRNA
223052	chr8	143378171	143378850	+	0	NA	intron (NM_052924, intron 5 of 14)	intron (NM_052924, intron 5 of 14)	9634	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
51980	chr12	53952071	53952600	+	0	NA	Intergenic	Intergenic	-2568	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
83623	chr16	28217301	28217550	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-5460	NM_015171	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
152439	chr22	20591401	20592400	+	0	NA	Intergenic	Intergenic	83853	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
69161	chr14	92587001	92588500	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	11516	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
63215	chr13	113840751	113840850	+	0	NA	intron (NM_000820, intron 4 of 14)	intron (NM_000820, intron 4 of 14)	23276	NM_000820	2621		NM_000820	ENSG00000183087	GAS6	AXLLG|AXSF	growth arrest specific 6	protein-coding
89052	chr16	88440021	88441000	+	0	NA	3' UTR (NM_001367624, exon 3 of 3)	3' UTR (NM_001367624, exon 3 of 3)	-12770	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
210803	chr7	100866901	100869000	+	0	NA	promoter-TSS (NR_106935)	promoter-TSS (NR_106935)	-86	NR_106935	102466755		NR_106935	ENSG00000283821	MIR6875	hsa-mir-6875	microRNA 6875	ncRNA
123609	chr19	54508471	54508630	+	0	NA	intron (NM_021270, intron 3 of 3).2	intron (NM_021270, intron 3 of 3).2	5719	NM_021270	3904		NM_002288	ENSG00000167618	LAIR2	CD306	leukocyte associated immunoglobulin like receptor 2	protein-coding
225379	chr9	34993751	34994150	+	0	NA	intron (NM_001349725, intron 3 of 4)	intron (NM_001349725, intron 3 of 4)	3660	NM_001135005	25822		NM_012266	ENSG00000137094	DNAJB5	Hsc40	DnaJ heat shock protein family (Hsp40) member B5	protein-coding
161356	chr3	40458451	40458550	+	0	NA	intron (NM_001034996, intron 2 of 5)	intron (NM_001034996, intron 2 of 5)	1161	NM_001034996	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
64104	chr14	22772551	22772880	+	0	NA	TTS (NM_001126106)	TTS (NM_001126106)	6027	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
77341	chr15	82533951	82534380	+	0	NA	Intergenic	L1MA5|LINE|L1	6292	NM_001021	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
116088	chr19	17262371	17263750	+	0	NA	intron (NM_001297703, intron 2 of 11)	AluSx1|SINE|Alu	1685	NM_001297703	83878		NM_031941	ENSG00000130307	USHBP1	AIEBP|MCC2	USH1 protein network component harmonin binding protein 1	protein-coding
144397	chr20	35270301	35270500	+	0	NA	intron (NM_006690, intron 7 of 8)	intron (NM_006690, intron 7 of 8)	7722	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
58821	chr12	132831171	132831530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2481	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
235642	chrX	48487121	48487580	+	0	NA	TTS (NM_012280)	TTS (NM_012280)	11151	NM_177439	24140		NM_012280	ENSG00000068438	FTSJ1	CDLIV|JM23|MRX44|MRX9|SPB1|TRMT7|XLID9	FtsJ RNA 2'-O-methyltransferase 1	protein-coding
239436	chrY	56701471	56701980	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-252530	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
200215	chr6	131293471	131293830	+	0	NA	Intergenic	Intergenic	43246	NM_138633	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
40837	chr11	65016301	65016500	+	0	NA	intron (NM_001199745, intron 1 of 3)	L2a|LINE|L2	-2105	NR_106939	102466756		NR_106939	ENSG00000278851	MIR6879	hsa-mir-6879	microRNA 6879	ncRNA
179874	chr5	609601	609800	+	0	NA	intron (NR_103444, intron 2 of 2)	intron (NR_103444, intron 2 of 2)	2510	NR_103444	100996325		NR_103444		CEP72-DT	-	CEP72 divergent transcript	ncRNA
70536	chr14	102506821	102507080	+	0	NA	exon (NM_152326, exon 4 of 4)	exon (NM_152326, exon 4 of 4)	2826	NM_152326	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
155837	chr22	39414301	39415100	+	0	NA	intron (NM_153497, intron 1 of 10)	intron (NM_153497, intron 1 of 10)	14920	NM_153497	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
3393	chr1	15735871	15736230	+	0	NA	promoter-TSS (NM_207348)	promoter-TSS (NM_207348)	-208	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
89544	chr16	89201011	89203100	+	0	NA	promoter-TSS (NM_001384764)	promoter-TSS (NM_001384764)	-377	NM_001384764	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
44914	chr11	115324651	115324980	+	0	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	-8762	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
107636	chr18	48951121	48953630	+	0	NA	Intergenic	CpG	-1664	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
140899	chr2	237684951	237685450	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-6964	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
75061	chr15	64246521	64247080	+	0	NA	intron (NM_001329607, intron 4 of 11)	intron (NM_001329607, intron 4 of 11)	-83778	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
71069	chr14	104829521	104830280	+	0	NA	Intergenic	AluSg|SINE|Alu	8699	NR_024396	196872		NM_152646	ENSG00000258701	VESTAR	LINC00638	VEGFC mRNA stability associated lncRNA	ncRNA
123959	chr19	55401731	55403230	+	0	NA	TTS (NR_145781)	TTS (NR_145781)	177	NR_145781	109623451		NR_145781		SNORD157	-	small nucleolar RNA, C/D box 157	snoRNA
191479	chr6	11198751	11199850	+	0	NA	3' UTR (NM_182966, exon 3 of 3)	3' UTR (NM_182966, exon 3 of 3)	33368	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
69868	chr14	99276171	99276330	+	0	NA	Intergenic	Intergenic	-4053	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
207130	chr7	42915921	42916380	+	0	NA	TTS (NM_002787)	TTS (NM_002787)	-4060	NM_001099858	79020		NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
88000	chr16	80802401	80802800	+	0	NA	intron (NM_152342, intron 1 of 6)	intron (NM_152342, intron 1 of 6)	1998	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
199121	chr6	111693701	111693900	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	65331	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
58128	chr12	124898101	124898900	+	0	NA	Intergenic	L1MB5|LINE|L1	16150	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
11767	chr1	92455351	92455530	+	0	NA	Intergenic	AluJo|SINE|Alu	28514	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
150435	chr21	42426571	42426930	+	0	NA	exon (NM_018961, exon 8 of 15)	exon (NM_018961, exon 8 of 15)	22848	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
149385	chr21	31098471	31099250	+	0	NA	Intergenic	Intergenic	-60384	NM_001099219	728299		NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
231061	chr9	129636821	129638380	+	0	NA	3' UTR (NM_001202403, exon 5 of 5)	3' UTR (NM_001202403, exon 5 of 5)	4551	NM_177999	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
72635	chr15	38482271	38482900	+	0	NA	intron (NM_173611, intron 7 of 7)	intron (NM_173611, intron 7 of 7)	28458	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
218617	chr8	56071721	56072680	+	0	NA	TTS (NM_001023)	TTS (NM_001023)	1701	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
17903	chr1	160112821	160113080	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2809	NM_000702	477		NM_000702	ENSG00000018625	ATP1A2	DEE98|FARIMPD|FHM2|MHP2	ATPase Na+/K+ transporting subunit alpha 2	protein-coding
29968	chr10	73643171	73643330	+	0	NA	Intergenic	AluJb|SINE|Alu	-1776	NM_021245	58529		NM_021245	ENSG00000177791	MYOZ1	CS-2|FATZ|MYOZ	myozenin 1	protein-coding
85347	chr16	50196421	50197500	+	0	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	43654	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
224475	chr9	16133721	16133980	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	142463	NM_001364979	100129385		NM_001271829	ENSG00000205549	LINC03041	C9orf92|Em:AL513424.1	long intergenic non-protein coding RNA 3041	ncRNA
237183	chrX	107712101	107713500	+	0	NA	TTS (NM_001318470)	TTS (NM_001318470)	3708	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
221156	chr8	119832321	119833580	+	0	NA	promoter-TSS (NM_003184)	promoter-TSS (NM_003184)	-109	NM_003184	6873		NM_003184	ENSG00000064313	TAF2	CIF150|MRT40|TAF2B|TAFII150	TATA-box binding protein associated factor 2	protein-coding
216542	chr8	21784321	21784750	+	0	NA	intron (NM_001495, intron 1 of 8)	intron (NM_001495, intron 1 of 8)	4340	NM_001165039	2675		NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
165179	chr3	72429651	72430180	+	0	NA	intron (NM_012234, intron 1 of 3)	L2c|LINE|L2	16708	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
204584	chr7	5292851	5292950	+	0	NA	intron (NM_001300847, intron 5 of 10)	AluSx1|SINE|Alu	9957	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
71603	chr14	106622271	106623080	+	0	NA	Intergenic	Intergenic	140236	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
5870	chr1	26750451	26750750	+	0	NA	intron (NM_139135, intron 4 of 19)	intron (NM_139135, intron 4 of 19)	-36454	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
225073	chr9	33285751	33286050	+	0	NA	Intergenic	AluSx|SINE|Alu	-4616	NM_002504	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
132217	chr2	102239401	102239800	+	0	NA	3' UTR (NM_001351448, exon 9 of 9)	3' UTR (NM_001351448, exon 9 of 9)	52286	NM_001351446	8808		NM_003854	ENSG00000115598	IL1RL2	IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2	interleukin 1 receptor like 2	protein-coding
121650	chr19	47485321	47485780	+	0	NA	intron (NR_038452, intron 1 of 3)	L2b|LINE|L2	1268	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
202219	chr6	156803251	156803750	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-23769	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
86114	chr16	57663171	57663330	+	0	NA	intron (NM_001370440, intron 14 of 14)	MIR|SINE|MIR	-5056	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
23032	chr1	226429001	226429400	+	0	NA	Intergenic	Intergenic	-21107	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
640	chr1	1343001	1343980	+	0	NA	intron (NM_004421, intron 1 of 14)	intron (NM_004421, intron 1 of 14)	-3782	NR_106866	102466740		NR_106866	ENSG00000284372	MIR6808	hsa-mir-6808	microRNA 6808	ncRNA
10482	chr1	66354321	66354580	+	0	NA	promoter-TSS (NM_001297442)	promoter-TSS (NM_001297442)	-85	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
104928	chr17	81922671	81923030	+	0	NA	exon (NM_002359, exon 3 of 3)	exon (NM_002359, exon 3 of 3)	616	NM_032711	4097		NM_002359	ENSG00000197063	MAFG	hMAF	MAF bZIP transcription factor G	protein-coding
167262	chr3	128602451	128602950	+	0	NA	Intergenic	Intergenic	-26614	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
211687	chr7	106659771	106660600	+	0	NA	3' UTR (NM_175884, exon 1 of 1)	3' UTR (NM_175884, exon 1 of 1)	973	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
113933	chr19	10730471	10730980	+	0	NA	intron (NM_001005362, intron 1 of 19)	intron (NM_001005362, intron 1 of 19)	12321	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
57427	chr12	121886121	121886430	+	0	NA	intron (NM_001171993, intron 1 of 15)	AluY|SINE|Alu	2336	NM_001171993	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
214007	chr7	143245201	143245780	+	0	NA	intron (NM_001363538, intron 8 of 11)	L2c|LINE|L2	-17939	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
87067	chr16	68366821	68367530	+	0	NA	intron (NM_018667, intron 3 of 8)	AluSx|SINE|Alu	56061	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
142895	chr20	17961221	17961880	+	0	NA	intron (NM_001282454, intron 1 of 12)	intron (NM_001282454, intron 1 of 12)	1396	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
107114	chr18	35065701	35066280	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	24577	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
134513	chr2	143429721	143430130	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	300506	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
121900	chr19	48391301	48392580	+	0	NA	promoter-TSS (NM_006801)	promoter-TSS (NM_006801)	-389	NM_006801	10945		NM_006801	ENSG00000105438	KDELR1	ERD2|ERD2.1|HDEL|PM23	KDEL endoplasmic reticulum protein retention receptor 1	protein-coding
173635	chr4	13522501	13523200	+	0	NA	Intergenic	CpG	8567	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
53409	chr12	64737651	64738030	+	0	NA	intron (NM_002076, intron 8 of 13)	L1MC5a|LINE|L1	21566	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
100385	chr17	60140951	60141600	+	0	NA	Intergenic	CpG	-8698	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
45684	chr11	119049571	119049950	+	0	NA	intron (NM_006389, intron 15 of 25)	intron (NM_006389, intron 15 of 25)	7445	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
117365	chr19	19558501	19558900	+	0	NA	Intergenic	Intergenic	20435	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
224562	chr9	19457271	19457780	+	0	NA	Intergenic	Intergenic	48516	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
114204	chr19	11426401	11426600	+	0	NA	exon (NM_145045, exon 6 of 13)	exon (NM_145045, exon 6 of 13)	-7186	NM_001035223	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
124251	chr19	57578121	57579300	+	0	NA	5' UTR (NM_017879, exon 1 of 4)	5' UTR (NM_017879, exon 1 of 4)	201	NM_017879	55659		NM_017879	ENSG00000083817	ZNF416	-	zinc finger protein 416	protein-coding
42963	chr11	73744201	73744400	+	0	NA	intron (NM_198896, intron 1 of 7)	AluY|SINE|Alu	15793	NM_001243719	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
25527	chr10	7337721	7337980	+	0	NA	intron (NM_001029880, intron 4 of 20)	intron (NM_001029880, intron 4 of 20)	71491	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
181188	chr5	39126701	39127100	+	0	NA	intron (NM_001349333, intron 12 of 19)	AluSp|SINE|Alu	-52501	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
123731	chr19	55058471	55058830	+	0	NA	intron (NM_001145971, intron 2 of 6).10	L1MB3|LINE|L1	4498	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
93036	chr17	17300621	17301700	+	0	NA	Intergenic	MER52D|LTR|ERV1	-2213	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
211719	chr7	106892201	106892400	+	0	NA	intron (NM_001282426, intron 10 of 10)	intron (NM_001282426, intron 10 of 10)	26821	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
155468	chr22	38486851	38487350	+	0	NA	intron (NM_006386, intron 12 of 12)	AluSz|SINE|Alu	19004	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
102083	chr17	74961631	74962830	+	0	NA	intron (NM_030630, intron 5 of 18)	intron (NM_030630, intron 5 of 18)	-8459	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
609	chr1	1310171	1310850	+	0	NA	intron (NM_001346116, intron 5 of 7)	intron (NM_001346116, intron 5 of 7)	1913	NM_153339	126789		NM_153339	ENSG00000169972	PUSL1	-	pseudouridine synthase like 1	protein-coding
145798	chr20	45412371	45412530	+	0	NA	Intergenic	Intergenic	-3691	NM_001184728	51604		NM_015937	ENSG00000124155	PIGT	CGI-06|MCAHS3|NDAP|PIG-T|PNH2	phosphatidylinositol glycan anchor biosynthesis class T	protein-coding
196820	chr6	46174651	46175100	+	0	NA	Intergenic	L1ME1|LINE|L1	-3865	NM_001290073	59084		NM_021572	ENSG00000112796	ENPP5	NPP-5|NPP5	ectonucleotide pyrophosphatase/phosphodiesterase family member 5	protein-coding
95630	chr17	37718101	37718300	+	0	NA	intron (NM_000458, intron 4 of 8)	intron (NM_000458, intron 4 of 8)	26859	NM_001304286	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
12879	chr1	110213551	110214080	+	0	NA	intron (NM_001377331, intron 1 of 2)	intron (NM_001377331, intron 1 of 2)	3501	NM_001377331	3749		NM_004978	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	potassium voltage-gated channel subfamily C member 4	protein-coding
82824	chr16	21491851	21492150	+	0	NA	intron (NR_027155, intron 1 of 28)	AluSc8|SINE|Alu	-9526	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
218789	chr8	59012201	59012400	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	106847	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
188118	chr5	150385521	150386100	+	0	NA	intron (NM_001371623, intron 17 of 26)	intron (NM_001371623, intron 17 of 26)	26946	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
232014	chr9	133361471	133361830	+	0	NA	TTS (NM_001278928).2	TTS (NM_001278928).2	5100	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
59389	chr13	24968321	24968600	+	0	NA	promoter-TSS (NR_026730)	promoter-TSS (NR_026730)	9	NR_026730	646405		NM_001126062		TPTE2P1	-	TPTE2 pseudogene 1	pseudo
234885	chrX	30635621	30635880	+	0	NA	Intergenic	Intergenic	-17609	NM_203391	2710		NM_000167	ENSG00000198814	GK	GK1|GKD	glycerol kinase	protein-coding
217156	chr8	26245471	26245700	+	0	NA	Intergenic	Intergenic	-45923	NM_002717	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
95727	chr17	38576571	38577100	+	0	NA	intron (NM_025248, intron 2 of 18)	intron (NM_025248, intron 2 of 18)	29117	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
170015	chr3	180919421	180919680	+	0	NA	intron (NM_001013439, intron 2 of 17)	AluSz|SINE|Alu	6879	NM_001363882	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
225397	chr9	35045421	35045900	+	0	NA	exon (NM_001040412, exon 3 of 3)	exon (NM_001040412, exon 3 of 3)	3420	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
189930	chr5	177387301	177387500	+	0	NA	intron (NM_003052, intron 5 of 12)	AluY|SINE|Alu	2966	NM_003052	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
27034	chr10	26869351	26869880	+	0	NA	Intergenic	Intergenic	-8528	NM_001178124	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
117650	chr19	23802021	23802550	+	0	NA	intron (NR_149351, intron 2 of 4)	intron (NR_149351, intron 2 of 4)	39281	NR_149351	388524		NM_001005472	ENSG00000288920	RPSA2	37LRP|67LR|LBP/p40|LRP/LR|LamR|RPSAP58|RPSA_30_1642	ribosomal protein SA 2	protein-coding
11949	chr1	93873471	93873630	+	0	NA	intron (NM_014597, intron 3 of 6)	AluJr|SINE|Alu	5656	NM_014597	30836		NM_014597	ENSG00000067334	DNTTIP2	ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2	deoxynucleotidyltransferase terminal interacting protein 2	protein-coding
15941	chr1	151826001	151826600	+	0	NA	promoter-TSS (NM_001001523)	promoter-TSS (NM_001001523)	-204	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
188220	chr5	150742901	150743500	+	0	NA	intron (NM_001135643, intron 3 of 13)	L1PA3|LINE|L1	15320	NM_001135644	51164		NM_016221	ENSG00000132912	DCTN4	DYN4|P62	dynactin subunit 4	protein-coding
229489	chr9	122215601	122216000	+	0	NA	intron (NM_199160, intron 5 of 8)	intron (NM_199160, intron 5 of 8)	5940	NM_001242335	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
216746	chr8	22460551	22461050	+	0	NA	intron (NM_005605, intron 1 of 13)	AluJr|SINE|Alu	19722	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
153088	chr22	23404521	23404780	+	0	NA	Intergenic	Intergenic	-2038	NR_003950	150244		NM_152509	ENSG00000290920	ZDHHC8BP	ZDHHC8P|ZDHHC8P1	ZDHHC8B, pseudogene	pseudo
77649	chr15	85499751	85500280	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	119412	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
172313	chr4	1613151	1613450	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	70691	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
144379	chr20	35146741	35148250	+	0	NA	promoter-TSS (NM_018217)	promoter-TSS (NM_018217)	-159	NR_026728	55741		NM_018217	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	ER degradation enhancing alpha-mannosidase like protein 2	protein-coding
43097	chr11	74870471	74870630	+	0	NA	intron (NR_165437, intron 5 of 11)	HUERS-P3-int|LTR|ERV1	78541	NM_001378157	143570		NM_182969	ENSG00000166435	XRRA1	-	X-ray radiation resistance associated 1	protein-coding
191497	chr6	11229321	11229950	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	3033	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
214444	chr7	150047101	150048430	+	0	NA	promoter-TSS (NM_001351027)	promoter-TSS (NM_001351027)	-50	NR_147022	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
162784	chr3	49091721	49092400	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluSx3|SINE|Alu	1572	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
206482	chr7	33052171	33052730	+	0	NA	intron (NM_001374336, intron 1 of 10)	AluSx1|SINE|Alu	10326	NM_001002010	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
140877	chr2	237591351	237592000	+	0	NA	promoter-TSS (NR_033308)	promoter-TSS (NR_033308)	-941	NM_022449	64284		NM_022449	ENSG00000124839	RAB17	-	RAB17, member RAS oncogene family	protein-coding
117900	chr19	32744271	32744430	+	0	NA	intron (NM_001366102, intron 4 of 32)	AluSz|SINE|Alu	24583	NM_001366102	91646		NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
100559	chr17	62652071	62652810	+	0	NA	intron (NM_006039, intron 1 of 29)	CpG	24770	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
230557	chr9	128423801	128424430	+	0	NA	intron (NM_016174, intron 3 of 12)	intron (NM_016174, intron 3 of 12)	3258	NM_016174	51148		NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
60823	chr13	45370901	45371380	+	0	NA	intron (NR_024458, intron 4 of 10)	intron (NR_024458, intron 4 of 10)	29795	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
233863	chrX	1531171	1532200	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	5500	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
187849	chr5	147628121	147628500	+	0	NA	intron (NM_001282282, intron 15 of 20)	intron (NM_001282282, intron 15 of 20)	68316	NR_038902	153469		NR_038902	ENSG00000280780	JAKMIP2-AS1	-	JAKMIP2 antisense RNA 1	ncRNA
227687	chr9	93003271	93004650	+	0	NA	intron (NM_001369951, intron 4 of 17)	intron (NM_001369951, intron 4 of 17)	10984	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
68240	chr14	76964551	76965330	+	0	NA	intron (NR_133913, intron 2 of 2)	intron (NR_133913, intron 2 of 2)	5302	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
192564	chr6	25472451	25472550	+	0	NA	exon (NM_017640, exon 11 of 37)	exon (NM_017640, exon 11 of 37)	-179715	NM_006998	10590		NM_006998	ENSG00000079689	SCGN	CALBL|DJ501N12.8|SECRET|SEGN|setagin	secretagogin, EF-hand calcium binding protein	protein-coding
197286	chr6	70957171	70957330	+	0	NA	promoter-TSS (NM_080742)	promoter-TSS (NM_080742)	-190	NM_080742	135152		NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
60992	chr13	46795571	46795730	+	0	NA	intron (NM_001984, intron 1 of 9)	Charlie13b|DNA|hAT-Charlie	1511	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
9622	chr1	52412971	52413130	+	0	NA	intron (NM_032864, intron 5 of 9)	intron (NM_032864, intron 5 of 9)	8448	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
165222	chr3	72977171	72977930	+	0	NA	TTS (NM_001080393)	TTS (NM_001080393)	-19193	NM_001318026	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
123812	chr19	55171671	55172280	+	0	NA	3' UTR (NM_003180, exon 9 of 9)	3' UTR (NM_003180, exon 9 of 9)	-5253	NM_001256714	352909		NM_178837	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	dynein axonemal assembly factor 3	protein-coding
157428	chr22	45166171	45166530	+	0	NA	intron (NM_153645, intron 1 of 8)	AluSz|SINE|Alu	1679	NM_153645	10762		NM_007172	ENSG00000093000	NUP50	NPAP60|NPAP60L	nucleoporin 50	protein-coding
191511	chr6	11311871	11312030	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	70398	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
224766	chr9	21989751	21990650	+	0	NA	intron (NM_001363763, intron 1 of 2)	intron (NM_001363763, intron 1 of 2)	4192	NM_058195	1029		NM_000077	ENSG00000147889	CDKN2A	ARF|CAI2|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
99288	chr17	49765971	49766530	+	0	NA	Intergenic	Intergenic	-2119	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
84632	chr16	30709471	30709830	+	0	NA	promoter-TSS (NR_002966)	promoter-TSS (NR_002966)	-887	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
227719	chr9	93042051	93042450	+	0	NA	Intergenic	AluSc|SINE|Alu	-16438	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
190109	chr5	177939121	177940150	+	0	NA	non-coding (NR_149047, exon 1 of 4)	non-coding (NR_149047, exon 1 of 4)	108	NR_149047	100128340		NR_149047		LOC100128340	-	uncharacterized LOC100128340	ncRNA
3258	chr1	14915401	14915630	+	0	NA	intron (NM_201628, intron 1 of 14)	intron (NM_201628, intron 1 of 14)	-8614	NM_001018000	23254		NM_015209	ENSG00000189337	KAZN	C1orf196|KAZ	kazrin, periplakin interacting protein	protein-coding
48195	chr12	8037871	8038130	+	0	NA	intron (NM_018416, intron 1 of 10)	intron (NM_018416, intron 1 of 10)	5284	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
15778	chr1	151192271	151192580	+	0	NA	Intergenic	AluJb|SINE|Alu	-2228	NM_005997	6944		NM_005997	ENSG00000163159	VPS72	CFL1|Swc2|TCFL1|YL-1|YL1	vacuolar protein sorting 72 homolog	protein-coding
168490	chr3	143348701	143349100	+	0	NA	intron (NM_173653, intron 14 of 15)	MIRc|SINE|MIR	6654	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
30434	chr10	79053321	79053580	+	0	NA	intron (NR_024429, intron 3 of 7)	intron (NR_024429, intron 3 of 7)	13998	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
67725	chr14	73494521	73494980	+	0	NA	intron (NM_203309, intron 15 of 16)	AluJr|SINE|Alu	3817	NM_024644	79697		NM_024644	ENSG00000170468	RIOX1	C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66	ribosomal oxygenase 1	protein-coding
191836	chr6	14876821	14877480	+	0	NA	Intergenic	Intergenic	-368919	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
176508	chr4	94406501	94406930	+	0	NA	Intergenic	Intergenic	-45142	NM_001256426	10611		NM_006457	ENSG00000163110	PDLIM5	ENH|ENH1|L9|LIM	PDZ and LIM domain 5	protein-coding
7538	chr1	34884171	34884330	+	0	NA	intron (NM_001080418, intron 8 of 11)	intron (NM_001080418, intron 8 of 11)	-24501	NM_001320261	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
121365	chr19	46851971	46852650	+	0	NA	Intergenic	AluJo|SINE|Alu	-1464	NM_001301078	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
115325	chr19	15110301	15110500	+	0	NA	intron (NM_033025, intron 3 of 7)	intron (NM_033025, intron 3 of 7)	2999	NM_001300910	85360		NM_033025	ENSG00000105137	SYDE1	7h3|SYD1	synapse defective Rho GTPase homolog 1	protein-coding
118162	chr19	35024871	35025230	+	0	NA	intron (NM_001320034, intron 18 of 18)	AluJr|SINE|Alu	-5420	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
109877	chr19	1248801	1250200	+	0	NA	intron (NM_177401, intron 1 of 7)	CpG	947	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
55244	chr12	101880671	101881030	+	0	NA	intron (NM_018370, intron 1 of 6)	intron (NM_018370, intron 1 of 6)	3270	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
3489	chr1	16018271	16018680	+	0	NA	promoter-TSS (NM_001349685)	promoter-TSS (NM_001349685)	-432	NM_001349689	27129		NM_014424	ENSG00000173641	HSPB7	cvHSP	heat shock protein family B (small) member 7	protein-coding
48408	chr12	9662401	9663280	+	0	NA	Intergenic	L1M3d|LINE|L1	-6873	NM_001197318	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
30252	chr10	75113321	75113730	+	0	NA	intron (NM_144660, intron 1 of 4)	intron (NM_144660, intron 1 of 4)	1869	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
198581	chr6	107618301	107619500	+	0	NA	intron (NM_018013, intron 5 of 6)	intron (NM_018013, intron 5 of 6)	113250	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
149559	chr21	33211921	33212980	+	0	NA	Intergenic	Intergenic	-17445	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
90351	chr17	1200721	1201930	+	0	NA	intron (NM_001322841, intron 1 of 22)	MIRb|SINE|MIR	-14053	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
94685	chr17	30626021	30626280	+	0	NA	non-coding (NR_033420, exon 1 of 1)	non-coding (NR_033420, exon 1 of 1)	1832	NR_033420	6459		NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2	pseudo
99939	chr17	57255551	57257290	+	0	NA	promoter-TSS (NM_001322251)	promoter-TSS (NM_001322251)	-103	NM_001322251	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
48160	chr12	7934251	7934980	+	0	NA	intron (NM_006931, intron 1 of 9)	intron (NM_006931, intron 1 of 9)	1572	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
143208	chr20	24957371	24958100	+	0	NA	intron (NM_003650, intron 2 of 3)	intron (NM_003650, intron 2 of 3)	8466	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
168761	chr3	151210871	151211530	+	0	NA	TTS (NM_014879)	TTS (NM_014879)	-7984	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
226464	chr9	71736371	71736900	+	0	NA	intron (NM_013390, intron 5 of 23)	intron (NM_013390, intron 5 of 23)	31878	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
39511	chr11	61065621	61066530	+	0	NA	Intergenic	Intergenic	-27888	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
96053	chr17	39468051	39468680	+	0	NA	intron (NM_016507, intron 1 of 13)	intron (NM_016507, intron 1 of 13)	6879	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
60781	chr13	45297921	45298980	+	0	NA	Intergenic	Intergenic	37997	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
162683	chr3	48938251	48938630	+	0	NA	intron (NM_001349214, intron 3 of 15)	L1ME1|LINE|L1	-19055	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
27817	chr10	38010121	38011500	+	0	NA	intron (NM_001278170, intron 1 of 3)	CpG	135	NM_001324177	7581		NM_006954	ENSG00000189180	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
152876	chr22	22576401	22576700	+	0	NA	Intergenic	Intergenic	-17189	NM_206955	23532		NM_006115	ENSG00000185686	PRAME	CT130|MAPE|OIP-4|OIP4	PRAME nuclear receptor transcriptional regulator	protein-coding
185492	chr5	131306071	131306800	+	0	NA	intron (NM_001038702, intron 1 of 4)	L1M2|LINE|L1	42382	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
64092	chr14	22636371	22636730	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-1706	NM_001348233	79549		NM_001348233	ENSG00000255804	OR6J1	OR6J1P|OR6J2	olfactory receptor family 6 subfamily J member 1	protein-coding
42072	chr11	67491571	67491980	+	0	NA	TTS (NM_003977)	TTS (NM_003977)	1530	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
132854	chr2	110866571	110866730	+	0	NA	intron (NM_001371254, intron 10 of 18)	intron (NM_001371254, intron 10 of 18)	134077	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
138985	chr2	218291811	218293150	+	0	NA	promoter-TSS (NM_001321438)	promoter-TSS (NM_001321438)	23	NM_022152	64114		NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
114429	chr19	12679421	12680000	+	0	NA	exon (NM_001369692, exon 4 of 7)	exon (NM_001369692, exon 4 of 7)	1501	NM_001206974	1725		NM_001930	ENSG00000095059	DHPS	DHS|DS|MIG13|NEDSSWI	deoxyhypusine synthase	protein-coding
41384	chr11	65999701	66000600	+	0	NA	exon (NM_001242486, exon 3 of 6)	exon (NM_001242486, exon 3 of 6)	-1929	NM_001143985	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
28411	chr10	47753271	47753730	+	0	NA	3' UTR (NM_001370186, exon 6 of 6)	3' UTR (NM_001370186, exon 6 of 6)	9181	NM_181519	83849		NM_031912	ENSG00000204176	SYT15	CHR10SYT|SYT15B|sytXV	synaptotagmin 15	protein-coding
5261	chr1	25033251	25033350	+	0	NA	Intergenic	Intergenic	9797	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
36141	chr11	3128801	3129000	+	0	NA	intron (NM_145638, intron 2 of 20)	intron (NM_145638, intron 2 of 20)	36410	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
147726	chr20	62386261	62388030	+	0	NA	promoter-TSS (NM_001024)	promoter-TSS (NM_001024)	42	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
192105	chr6	16711451	16713580	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	47669	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
224798	chr9	22240621	22241000	+	0	NA	Intergenic	Intergenic	-206014	NM_022160	63951		NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
177117	chr4	108096871	108097230	+	0	NA	intron (NM_016269, intron 3 of 11)	L1MA3|LINE|L1	69747	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
6749	chr1	30725971	30726330	+	0	NA	intron (NR_034182, intron 3 of 3)	intron (NR_034182, intron 3 of 3)	-2565	NM_002379	4146		NM_002379	ENSG00000162510	MATN1	CMP|CRTM	matrilin 1	protein-coding
90896	chr17	2408501	2409280	+	0	NA	intron (NR_028335, intron 2 of 2)	AluY|SINE|Alu	6546	NR_028335	284009		NM_001025459		LOC284009	-	uncharacterized LOC284009	ncRNA
145562	chr20	44288371	44288550	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	22742	NM_001080472	128486		NM_001080472	ENSG00000197296	FITM2	C20orf142|Fit2|SIDDIS|dJ881L22.2	fat storage inducing transmembrane protein 2	protein-coding
24023	chr1	235269271	235269850	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-57656	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
67917	chr14	74617701	74619100	+	0	NA	Intergenic	Intergenic	-6163	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
43129	chr11	75262751	75263250	+	0	NA	3' UTR (NM_004041, exon 16 of 16)	3' UTR (NM_004041, exon 16 of 16)	22226	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
205454	chr7	17145671	17145830	+	0	NA	Intergenic	Intergenic	-152902	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
18758	chr1	167498301	167498550	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	20104	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
36848	chr11	10306211	10306650	+	0	NA	exon (NM_001124, exon 4 of 4)	exon (NM_001124, exon 4 of 4)	1357	NM_001124	133		NM_001124	ENSG00000148926	ADM	AM|PAMP	adrenomedullin	protein-coding
72910	chr15	40354351	40355250	+	0	NA	intron (NM_001145643, intron 2 of 2)	intron (NM_001145643, intron 2 of 2)	-3419	NM_033510	85455		NM_033510	ENSG00000140323	DISP2	C15orf36|DISPB|HsT16908|LINC00594	dispatched RND transporter family member 2	protein-coding
131915	chr2	98828551	98829780	+	0	NA	intron (NM_207362, intron 5 of 9)	intron (NM_207362, intron 5 of 9)	-57267	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
91330	chr17	4403051	4403550	+	0	NA	Intergenic	Intergenic	-30640	NM_001320449	201305		NM_182538	ENSG00000182557	SPNS3	SLC62A3|SLC63A3	SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)	protein-coding
47107	chr12	668901	670200	+	0	NA	Intergenic	AluSx3|SINE|Alu	-6105	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
59681	chr13	29125071	29125730	+	0	NA	intron (NM_001384606, intron 4 of 14)	intron (NM_001384606, intron 4 of 14)	-303260	NM_015233	23281		NM_015233	ENSG00000132938	MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated scaffold protein 2	protein-coding
134132	chr2	134152001	134152200	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	24975	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
145475	chr20	43781221	43781700	+	0	NA	Intergenic	MIR|SINE|MIR	-54458	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
70732	chr14	103354721	103355280	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	17151	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
172019	chr4	984951	985550	+	0	NA	intron (NM_134425, intron 2 of 2)	intron (NM_134425, intron 2 of 2)	-1747	NR_110313	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
144073	chr20	33685751	33687550	+	0	NA	promoter-TSS (NM_005225)	promoter-TSS (NM_005225)	-265	NM_005225	1869		NM_005225	ENSG00000101412	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
167036	chr3	126522071	126523150	+	0	NA	Intergenic	Intergenic	-1545	NM_152889	166012		NM_152889	ENSG00000180767	CHST13	C4ST3	carbohydrate sulfotransferase 13	protein-coding
19340	chr1	173827001	173827400	+	0	NA	intron (NM_018122, intron 2 of 16)	intron (NM_018122, intron 2 of 16)	2527	NM_001365213	55157		NM_018122	ENSG00000117593	DARS2	ASPRS|LBSL|MT-ASPRS|mtAspRS	aspartyl-tRNA synthetase 2, mitochondrial	protein-coding
95915	chr17	38908671	38909100	+	0	NA	intron (NM_006148, intron 4 of 6)	intron (NM_006148, intron 4 of 6)	-6094	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
219276	chr8	67491571	67491930	+	0	NA	non-coding (NR_136224, exon 5 of 5)	non-coding (NR_136224, exon 5 of 5)	147916	NR_136224	102724708		NR_136223		ARFGEF1-DT	-	ARFGEF1 divergent transcript	ncRNA
32503	chr10	102747051	102747350	+	0	NA	intron (NM_001083913, intron 1 of 3)	AluSc|SINE|Alu	3252	NM_001083913	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
75303	chr15	65271001	65271200	+	0	NA	intron (NM_017851, intron 1 of 5)	intron (NM_017851, intron 1 of 5)	14491	NR_145768	109617003		NR_145768	ENSG00000206903	SNORA24B	-	small nucleolar RNA, H/ACA box 24B	snoRNA
20923	chr1	202193831	202194530	+	0	NA	exon (NM_001017403, exon 1 of 18)	exon (NM_001017403, exon 1 of 18)	190	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
31535	chr10	96890151	96890450	+	0	NA	intron (NM_032440, intron 2 of 7)	AluJr4|SINE|Alu	57355	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
81647	chr16	10944201	10945530	+	0	NA	intron (NM_001243403, intron 1 of 20)	CpG	301	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
20892	chr1	202151471	202151630	+	0	NA	intron (NR_037663, intron 8 of 9)	AluSp|SINE|Alu	-6807	NM_001256129	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
78326	chr15	90961251	90961550	+	0	NA	intron (NM_033544, intron 8 of 8)	intron (NM_033544, intron 8 of 8)	-4969	NR_051984	100507118		NR_051984	ENSG00000258725	PRC1-AS1	-	PRC1 antisense RNA 1	ncRNA
54310	chr12	89477701	89478050	+	0	NA	intron (NM_172240, intron 4 of 11)	L2b|LINE|L2	46921	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
208828	chr7	73682621	73684000	+	0	NA	promoter-TSS (NR_037776)	promoter-TSS (NR_037776)	143	NM_032317	84277		NM_032317	ENSG00000176410	DNAJC30	LHONAR|LHONAR1|MC1DN38|WBSCR18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding
165197	chr3	72666121	72666480	+	0	NA	Intergenic	Intergenic	-2051	NR_135531	105377162		NR_135531		LOC105377162	-	uncharacterized LOC105377162	ncRNA
57846	chr12	123264501	123265430	+	0	NA	intron (NM_004642, intron 3 of 3)	intron (NM_004642, intron 3 of 3)	3289	NM_001270434	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
2425	chr1	9596151	9596600	+	0	NA	intron (NM_001130924, intron 2 of 10)	MER58A|DNA|hAT-Charlie	7464	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
228265	chr9	98046401	98046600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10232	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
102555	chr17	75846271	75847150	+	0	NA	3' UTR (NM_001330499, exon 7 of 7)	3' UTR (NM_001330499, exon 7 of 7)	-2306	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
203103	chr6	166439821	166440080	+	0	NA	intron (NM_021135, intron 14 of 20)	MER89|LTR|ERV1	25433	NR_046793	100874353		NR_046793	ENSG00000232082	RPS6KA2-IT1	-	RPS6KA2 intronic transcript 1	ncRNA
156933	chr22	42308201	42308830	+	0	NA	Intergenic	MIR|SINE|MIR	-24588	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
12167	chr1	100352201	100353570	+	0	NA	5' UTR (NM_033313, exon 1 of 11)	5' UTR (NM_033313, exon 1 of 11)	379	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
124314	chr19	58091401	58091800	+	0	NA	intron (NM_001145542, intron 1 of 6)	intron (NM_001145542, intron 1 of 6)	6631	NM_001145543	65982		NM_023926	ENSG00000121413	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
226008	chr9	41518471	41518650	+	0	NA	Intergenic	L1PB3|LINE|L1	-129114	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
65740	chr14	53151601	53152700	+	0	NA	intron (NM_030637, intron 1 of 11)	CpG	1173	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
152849	chr22	22195301	22195730	+	0	NA	Intergenic	Intergenic	-49271	NM_001303509	7441		NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	V-set pre-B cell surrogate light chain 1	protein-coding
164130	chr3	56719671	56720350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-36745	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
2477	chr1	9664801	9665550	+	0	NA	intron (NM_005026, intron 1 of 23)	AluJb|SINE|Alu	-10589	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
79209	chr16	353801	354700	+	0	NA	Intergenic	Intergenic	-1527	NM_181050	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
172160	chr4	1216371	1218430	+	0	NA	non-coding (NR_104331, exon 6 of 6)	non-coding (NR_104331, exon 6 of 6)	7280	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
150527	chr21	42960871	42961030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9936	NR_049889	100847013		NR_049889	ENSG00000264580	MIR5692B	-	microRNA 5692b	ncRNA
185985	chr5	133423651	133424150	+	0	NA	intron (NM_015082, intron 3 of 15)	intron (NM_015082, intron 3 of 15)	3806	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
99106	chr17	49191751	49194430	+	0	NA	Intergenic	Intergenic	16291	NM_031498	2793		NM_031498	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG9|GNGT8|HG3I	G protein subunit gamma transducin 2	protein-coding
67652	chr14	73075071	73075250	+	0	NA	intron (NM_021239, intron 2 of 18)	AluSp|SINE|Alu	16626	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
119224	chr19	39461621	39461880	+	0	NA	intron (NM_001111020, intron 10 of 29)	AluSx|SINE|Alu	-6472	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
12369	chr1	101247621	101248130	+	0	NA	Intergenic	Intergenic	10856	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
118934	chr19	38769451	38770500	+	0	NA	TTS (NM_002307)	TTS (NM_002307)	3542	NM_002307	3963		NM_002307	ENSG00000205076	LGALS7	GAL7|LGALS7A	galectin 7	protein-coding
140658	chr2	233867751	233868540	+	0	NA	intron (NR_024322, intron 1 of 1)	intron (NR_024322, intron 1 of 1)	264	NR_024322	151507		NM_001166217	ENSG00000293137	MSL3B	MSL3L2|MSL3P1	MSL complex subunit 3B	protein-coding
120883	chr19	45580271	45580630	+	0	NA	intron (NM_025136, intron 1 of 1)	AluSp|SINE|Alu	4352	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
213689	chr7	140156721	140157350	+	0	NA	intron (NM_030647, intron 1 of 19)	intron (NM_030647, intron 1 of 19)	19948	NM_030647	80853		NM_030647	ENSG00000006459	KDM7A	JHDM1D	lysine demethylase 7A	protein-coding
106145	chr18	9613051	9613330	+	0	NA	intron (NR_168404, intron 2 of 20)	intron (NR_168404, intron 2 of 20)	1369	NM_001042388	9989		NM_005134	ENSG00000154845	PPP4R1	MEG1|PP4(Rmeg)|PP4R1	protein phosphatase 4 regulatory subunit 1	protein-coding
92629	chr17	10115101	10116180	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-78983	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
89583	chr16	89272921	89273180	+	0	NA	intron (NM_013275, intron 11 of 12)	L1MA1|LINE|L1	-23078	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
155447	chr22	38469401	38469980	+	0	NA	intron (NM_006855, intron 1 of 4)	intron (NM_006855, intron 1 of 4)	1594	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
181453	chr5	41866271	41868030	+	0	NA	intron (NR_157114, intron 1 of 15)	L1PB1|LINE|L1	-2880	NR_046635	100874002		NR_046635	ENSG00000248668	OXCT1-AS1	SARRAH	OXCT1 antisense RNA 1	ncRNA
70474	chr14	102074921	102075850	+	0	NA	Intergenic	Intergenic	11659	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
129095	chr2	65120071	65120500	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSx3|SINE|Alu	9821	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
64322	chr14	23632001	23632650	+	0	NA	intron (NM_001318835, intron 1 of 4)	intron (NM_001318835, intron 1 of 4)	2210	NM_001318835	10202		NM_005794	ENSG00000100867	DHRS2	HEP27|SDR25C1	dehydrogenase/reductase 2	protein-coding
107755	chr18	50359651	50359950	+	0	NA	Intergenic	Intergenic	-15246	NM_145060	220134		NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
98227	chr17	46152421	46153080	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	40032	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
162298	chr3	47412621	47413000	+	0	NA	TTS (NM_012235)	TTS (NM_012235)	31789	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
14080	chr1	120852501	120852780	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-1655	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
128631	chr2	61368301	61368530	+	0	NA	intron (NM_014709, intron 10 of 79)	AluSc|SINE|Alu	48962	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
50767	chr12	49028071	49028450	+	0	NA	intron (NM_003482, intron 46 of 54)	intron (NM_003482, intron 46 of 54)	-9484	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
102632	chr17	76015251	76015350	+	0	NA	exon (NM_001988, exon 16 of 22)	exon (NM_001988, exon 16 of 22)	12006	NM_001320747	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
140908	chr2	237697681	237698930	+	0	NA	intron (NM_001137551, intron 1 of 11)	MIR|SINE|MIR	6100	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
103061	chr17	77235421	77235900	+	0	NA	Intergenic	Intergenic	-45839	NM_001293695	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
213560	chr7	139118121	139119700	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-9190	NM_020119	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
205040	chr7	6534021	6534480	+	0	NA	intron (NM_001145118, intron 2 of 21)	MIRb|SINE|MIR	17186	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
115541	chr19	15468671	15468830	+	0	NA	exon (NM_052890, exon 5 of 5)	exon (NM_052890, exon 5 of 5)	-4206	NM_001348027	64926		NM_022904	ENSG00000105122	RASAL3	-	RAS protein activator like 3	protein-coding
47309	chr12	1696421	1696680	+	0	NA	intron (NM_001375365, intron 1 of 7).2	AluJr|SINE|Alu	5480	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
66198	chr14	61189051	61189350	+	0	NA	Intergenic	Intergenic	92138	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
187876	chr5	148620421	148620980	+	0	NA	intron (NM_199453, intron 1 of 6)	MER33|DNA|hAT-Charlie	16361	NM_001040173	3360		NM_000870	ENSG00000164270	HTR4	5-HT4|5-HT4R	5-hydroxytryptamine receptor 4	protein-coding
198306	chr6	100472851	100473050	+	0	NA	Intergenic	(AGC)n|Simple_repeat|Simple_repeat	-8029	NM_005068	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
178735	chr4	153081971	153082750	+	0	NA	Intergenic	Intergenic	-69803	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
142526	chr20	4998201	4998830	+	0	NA	intron (NM_203327, intron 1 of 16)	intron (NM_203327, intron 1 of 16)	2995	NM_005116	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
58744	chr12	132604571	132604950	+	0	NA	exon (NM_001195520, exon 3 of 6)	exon (NM_001195520, exon 3 of 6)	5822	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
206995	chr7	38341371	38341750	+	0	NA	promoter-TSS (NR_040085)	promoter-TSS (NR_040085)	-17	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
220515	chr8	100674821	100675430	+	0	NA	Intergenic	AluJb|SINE|Alu	-25460	NM_152628	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
43327	chr11	76382871	76383030	+	0	NA	3' UTR (NM_001305225, exon 1 of 1)	3' UTR (NM_001305225, exon 1 of 1)	1627	NM_001347884	100506127		NM_001013634	ENSG00000179240	GVQW3	-	GVQW motif containing 3	protein-coding
109658	chr19	1012151	1012850	+	0	NA	exon (NM_001033026, exon 4 of 11)	exon (NM_001033026, exon 4 of 11)	8623	NM_001033026	91304		NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
29102	chr10	68330821	68333450	+	0	NA	promoter-TSS (NM_001322449)	promoter-TSS (NM_001322449)	124	NM_001322448	3189		NM_012207	ENSG00000096746	HNRNPH3	2H9|HNRPH3	heterogeneous nuclear ribonucleoprotein H3	protein-coding
213717	chr7	140263001	140263780	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	86129	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
237458	chrX	119750901	119751100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7588	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
144346	chr20	34998371	34999800	+	0	NA	exon (NM_020884, exon 36 of 45)	exon (NM_020884, exon 36 of 45)	-8613	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
66405	chr14	61506851	61507180	+	0	NA	intron (NM_006255, intron 10 of 13)	L1MA10|LINE|L1	63179	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
66891	chr14	65179921	65180180	+	0	NA	Intergenic	Intergenic	42297	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
28150	chr10	43454931	43456600	+	0	NA	intron (NM_001355444, intron 1 of 3)	CpG	18654	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
216779	chr8	22507571	22507730	+	0	NA	intron (NM_005605, intron 4 of 13)	intron (NM_005605, intron 4 of 13)	-44277	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
110421	chr19	1965501	1965900	+	0	NA	intron (NM_001319, intron 1 of 11)	AluJb|SINE|Alu	-11151	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
130473	chr2	85549271	85549650	+	0	NA	3' UTR (NM_001142269, exon 14 of 14)	3' UTR (NM_001142269, exon 14 of 14)	10292	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
31114	chr10	89332001	89333400	+	0	NA	intron (NM_001031683, intron 1 of 1)	intron (NM_001031683, intron 1 of 1)	171	NM_001289759	3437		NM_001549	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41	interferon induced protein with tetratricopeptide repeats 3	protein-coding
219027	chr8	65562021	65562430	+	0	NA	intron (NR_033893, intron 1 of 4)	intron (NR_033893, intron 1 of 4)	441	NR_033893	286186		NR_033893	ENSG00000254081	LINC01299	-	long intergenic non-protein coding RNA 1299	ncRNA
182428	chr5	61625651	61626630	+	0	NA	Intergenic	CpG	-11620	NR_161251	285668		NR_126523	ENSG00000178722	LINC03122	C5orf64|LINC03119	long intergenic non-protein coding RNA 3122	ncRNA
109908	chr19	1287151	1287350	+	0	NA	intron (NM_001405, intron 1 of 3)	intron (NM_001405, intron 1 of 3)	1377	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
18278	chr1	161117351	161118580	+	0	NA	promoter-TSS (NM_001185094)	promoter-TSS (NM_001185094)	72	NM_012394	5202		NM_012394	ENSG00000143256	PFDN2	PFD2	prefoldin subunit 2	protein-coding
10980	chr1	84435021	84435700	+	0	NA	Intergenic	L2|LINE|L2	27090	NM_058248	58511		NM_021233	ENSG00000137976	DNASE2B	DLAD	deoxyribonuclease 2 beta	protein-coding
96786	chr17	41801451	41802200	+	0	NA	TTS (NM_006455)	TTS (NM_006455)	10124	NM_006455	10609		NM_006455	ENSG00000141696	P3H4	LEPREL4|NO55|NOL55|SC65	prolyl 3-hydroxylase family member 4 (inactive)	protein-coding
69378	chr14	94030671	94031030	+	0	NA	intron (NM_023112, intron 1 of 5)	MLT1D|LTR|ERVL-MaLR	4510	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
45643	chr11	118996371	118997200	+	0	NA	Intergenic	AluSx|SINE|Alu	-1353	NR_104051	338657		NM_198489	ENSG00000186166	CENATAC	CCDC84|DLNB14|MVA4	centrosomal AT-AC splicing factor	protein-coding
135220	chr2	159209101	159209300	+	0	NA	intron (NM_001350064, intron 19 of 26)	intron (NM_001350064, intron 19 of 26)	22365	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
26991	chr10	26789321	26789580	+	0	NA	intron (NR_145410, intron 2 of 11)	intron (NR_145410, intron 2 of 11)	71508	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
148141	chr20	63492371	63492730	+	0	NA	intron (NM_001958, intron 5 of 7)	(GGAT)n|Simple_repeat|Simple_repeat	6533	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
25170	chr10	5409621	5409880	+	0	NA	Intergenic	Intergenic	-2807	NM_001047160	10276		NM_005863	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
136641	chr2	179298571	179298930	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-33918	NM_178123	91404		NM_178123	ENSG00000187231	SESTD1	SOLO	SEC14 and spectrin domain containing 1	protein-coding
6414	chr1	28055721	28056800	+	0	NA	intron (NR_104214, intron 2 of 16)	MER74B|LTR|ERVL	32350	NM_001282560	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
222519	chr8	140556871	140557230	+	0	NA	intron (NM_012154, intron 8 of 18)	intron (NM_012154, intron 8 of 18)	45054	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
78096	chr15	90250701	90250900	+	0	NA	non-coding (NR_104604, exon 2 of 10)	non-coding (NR_104604, exon 2 of 10)	1268	NR_104604								
15258	chr1	149632601	149632980	+	0	NA	intron (NR_111950, intron 1 of 8)	LTR49|LTR|ERV1	25778	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
49812	chr12	31977951	31978250	+	0	NA	intron (NM_018169, intron 3 of 5)	AluSz|SINE|Alu	18685	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
66356	chr14	61460771	61462680	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	108469	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
56219	chr12	111601271	111601630	+	0	NA	Intergenic	AluSq|SINE|Alu	-1774	NR_132311	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
224284	chr9	6420051	6420850	+	0	NA	intron (NR_046386, intron 1 of 16)	AluY|SINE|Alu	7251	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
128709	chr2	61688971	61689330	+	0	NA	Intergenic	L1MDa|LINE|L1	-150794	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
13916	chr1	120066521	120066830	+	0	NA	intron (NM_001200001, intron 1 of 21)	intron (NM_001200001, intron 1 of 21)	2987	NM_024408	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
8950	chr1	44306101	44306700	+	0	NA	intron (NM_001301698, intron 5 of 7)	MIRc|SINE|MIR	48857	NM_001301698	79033		NM_024066	ENSG00000117419	ERI3	PINT1|PRNPIP	ERI1 exoribonuclease family member 3	protein-coding
194101	chr6	31944521	31944780	+	0	NA	intron (NM_000063, intron 15 of 17).6	AluSx1|SINE|Alu	-1445	NM_001710	629		NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
71575	chr14	106442821	106443230	+	0	NA	Intergenic	Intergenic	-39414	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
109371	chr19	643271	644180	+	0	NA	3' UTR (NM_020637, exon 3 of 3)	3' UTR (NM_020637, exon 3 of 3)	3830	NM_001300812	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
82978	chr16	21956901	21957300	+	0	NA	intron (NM_003366, intron 1 of 13)	intron (NM_003366, intron 1 of 13)	3739	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
219249	chr8	67066801	67067200	+	0	NA	intron (NM_001382391, intron 1 of 30)	AluSz6|SINE|Alu	2608	NM_001364869	79848		NM_024790	ENSG00000104218	CSPP1	CSPP|CSPP-L|JBTS21	centrosome and spindle pole associated protein 1	protein-coding
158140	chr22	50179651	50180200	+	0	NA	non-coding (NR_027691, exon 5 of 5)	non-coding (NR_027691, exon 5 of 5)	-5988	NR_135275	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
84415	chr16	30358551	30358950	+	0	NA	exon (NM_015527, exon 8 of 9)	exon (NM_015527, exon 8 of 9)	-3442	NM_006110	10421		NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
178869	chr4	154626771	154627130	+	0	NA	Intergenic	CpG	-14142	NM_000509	2266		NM_000509	ENSG00000171557	FGG	-	fibrinogen gamma chain	protein-coding
197663	chr6	85455621	85455880	+	0	NA	intron (NM_002526, intron 1 of 8)	MER21C|LTR|ERVL	5667	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
30772	chr10	84336951	84337480	+	0	NA	intron (NM_001284241, intron 1 of 2)	L2a|LINE|L2	8626	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
218910	chr8	60767301	60767680	+	0	NA	intron (NM_001316690, intron 1 of 4)	intron (NM_001316690, intron 1 of 4)	26231	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
104551	chr17	81307201	81307630	+	0	NA	intron (NR_038080, intron 2 of 3)	(CCCTTC)n|Simple_repeat|Simple_repeat	1833	NR_038080	284185		NM_178519		LINC00482	C17orf55	long intergenic non-protein coding RNA 482	ncRNA
40638	chr11	64720571	64721480	+	0	NA	intron (NM_015080, intron 1 of 22)	intron (NM_015080, intron 1 of 22)	2172	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
150845	chr21	44060071	44060430	+	0	NA	intron (NM_003274, intron 6 of 22)	intron (NM_003274, intron 6 of 22)	-14074	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
214050	chr7	143375051	143376550	+	0	NA	intron (NM_001371250, intron 1 of 6)	intron (NM_001371250, intron 1 of 6)	5225	NR_161353	100507507		NR_161353		FAM131B-AS2	-	FAM131B antisense RNA 2	ncRNA
26782	chr10	23092821	23093280	+	0	NA	Intergenic	L1ME1|LINE|L1	-2529	NM_012228	22921		NM_012228	ENSG00000148450	MSRB2	CBS-1|CBS1|CGI-131|MSRB|PILB	methionine sulfoxide reductase B2	protein-coding
118078	chr19	34358701	34360700	+	0	NA	Intergenic	Intergenic	-5040	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
150370	chr21	42227601	42228850	+	0	NA	intron (NM_207628, intron 4 of 16)	intron (NM_207628, intron 4 of 16)	8327	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
204262	chr7	2630351	2630680	+	0	NA	Intergenic	Intergenic	-1471	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
121957	chr19	48475721	48476430	+	0	NA	intron (NM_017457, intron 8 of 11)	intron (NM_017457, intron 8 of 11)	6706	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
193477	chr6	30537921	30538180	+	0	NA	Intergenic	L1MC4|LINE|L1	-18659	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
225891	chr9	39721021	39721330	+	0	NA	Intergenic	LTR49|LTR|ERV1	88984	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
4426	chr1	21269801	21270680	+	0	NA	intron (NM_001397, intron 4 of 18)	MIRb|SINE|MIR	9375	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
24393	chr1	243010651	243011080	+	0	NA	Intergenic	LTR33|LTR|ERVL	90879	NR_029401	731275		NR_029401	ENSG00000291217	LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
224330	chr9	6758601	6760280	+	0	NA	intron (NR_148677, intron 1 of 21)	intron (NR_148677, intron 1 of 21)	1467	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
196419	chr6	43424371	43424730	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2991	NM_001350518	89845		NM_033450	ENSG00000124574	ABCC10	EST182763|MRP7|SIMRP7	ATP binding cassette subfamily C member 10	protein-coding
197764	chr6	87333651	87334130	+	0	NA	intron (NM_001042493, intron 2 of 3)	MSTB|LTR|ERVL-MaLR	-4612	NM_198568	375519		NM_198568	ENSG00000164411	GJB7	CX25|bA136M9.1|connexin25	gap junction protein beta 7	protein-coding
51482	chr12	52080621	52080880	+	0	NA	intron (NM_001369216, intron 1 of 2)	intron (NM_001369216, intron 1 of 2)	1046	NM_001369216	113523638		NM_001369216	ENSG00000284791	SMIM41	-	small integral membrane protein 41	protein-coding
180727	chr5	31581501	31581700	+	0	NA	Intergenic	L1MB8|LINE|L1	49299	NM_018356	55322		NM_018356	ENSG00000082213	C5orf22	-	chromosome 5 open reading frame 22	protein-coding
173756	chr4	16262101	16262500	+	0	NA	Intergenic	Intergenic	35637	NR_027696	202020		NM_152684	ENSG00000263327	TAPT1-AS1	-	TAPT1 antisense RNA 1 (head to head)	ncRNA
211980	chr7	113017951	113018050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-22357	NR_110162	101928036		NR_110162	ENSG00000234520	HRAT17	-	heart tissue-associated transcript 17	ncRNA
174236	chr4	37888221	37889180	+	0	NA	Intergenic	Intergenic	-2384	NM_015173	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
38604	chr11	46314951	46315480	+	0	NA	intron (NM_052854, intron 8 of 11)	intron (NM_052854, intron 8 of 11)	-17711	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
121607	chr19	47416301	47417080	+	0	NA	exon (NM_001346148, exon 4 of 13)	exon (NM_001346148, exon 4 of 13)	2837	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
69667	chr14	98017771	98017930	+	0	NA	Intergenic	L2b|LINE|L2	-39726	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
140371	chr2	232927021	232927450	+	0	NA	intron (NM_019850, intron 3 of 14)	CpG	916	NM_001114090	25791		NM_019850	ENSG00000066248	NGEF	ARHGEF27|EPHEXIN	neuronal guanine nucleotide exchange factor	protein-coding
82741	chr16	21400171	21400330	+	0	NA	Intergenic	L2b|LINE|L2	25128	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
138492	chr2	207141521	207141780	+	0	NA	intron (NM_001270943, intron 1 of 3)	MER102c|DNA|hAT-Charlie	-7513	NM_001270944	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
162266	chr3	47296901	47297300	+	0	NA	intron (NM_025010, intron 1 of 9)	intron (NM_025010, intron 1 of 9)	14156	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
167584	chr3	129555621	129555880	+	0	NA	3' UTR (NM_015103, exon 36 of 36)	3' UTR (NM_015103, exon 36 of 36)	7365	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
80854	chr16	3509001	3510430	+	0	NA	promoter-TSS (NM_024793)	promoter-TSS (NM_024793)	-179	NM_024793	23059		NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
134964	chr2	152048101	152048300	+	0	NA	intron (NM_000726, intron 2 of 13)	MER20|DNA|hAT-Charlie	50563	NM_001005746	785		NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
124087	chr19	55636851	55637030	+	0	NA	Intergenic	L2b|LINE|L2	-4062	NM_207115	51157		NM_016202	ENSG00000213015	ZNF580	-	zinc finger protein 580	protein-coding
176831	chr4	102563851	102564680	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-61779	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
68997	chr14	91488351	91488450	+	0	NA	intron (NR_158976, intron 3 of 16)	intron (NR_158976, intron 3 of 16)	21910	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
96563	chr17	40446021	40446280	+	0	NA	intron (NM_001552, intron 1 of 3)	AluJr|SINE|Alu	2700	NM_001552	3487		NM_001552	ENSG00000141753	IGFBP4	BP-4|HT29-IGFBP|IBP4|IGFBP-4	insulin like growth factor binding protein 4	protein-coding
34991	chr11	517221	517750	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-10243	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
6841	chr1	31037921	31038450	+	0	NA	intron (NM_014676, intron 2 of 21)	intron (NM_014676, intron 2 of 21)	27532	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
82088	chr16	14302701	14303450	+	0	NA	promoter-TSS (NR_030177)	promoter-TSS (NR_030177)	570	NR_132984	100129781		NR_132983	ENSG00000262454	MIR193BHG	HypERlnc|lincNORS	MIR193b-365a host gene	ncRNA
187917	chr5	148849371	148850350	+	0	NA	Intergenic	Intergenic	23249	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
157648	chr22	46123521	46124080	+	0	NA	Intergenic	Intergenic	10114	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
176516	chr4	94757901	94758630	+	0	NA	promoter-TSS (NR_121610)	promoter-TSS (NR_121610)	310	NM_001203	658		NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMD3|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
27491	chr10	32250371	32250750	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	96598	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
27805	chr10	35858921	35859230	+	0	NA	Intergenic	L1PA3|LINE|L1	80773	NR_110138	102578074		NR_110138	ENSG00000280719	PCAT5	LINC01452|TPCAT-10-36067	prostate cancer associated transcript 5	ncRNA
63719	chr14	21203971	21204130	+	0	NA	non-coding (NR_038970, exon 1 of 1)	non-coding (NR_038970, exon 1 of 1)	1453	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
205002	chr7	6458471	6459330	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-10888	NM_001142936	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
203738	chr7	1150321	1151000	+	0	NA	3' UTR (NM_001365383, exon 6 of 6)	3' UTR (NM_001365383, exon 6 of 6)	9536	NM_001365381	90637		NM_182491	ENSG00000178381	ZFAND2A	AIRAP	zinc finger AN1-type containing 2A	protein-coding
95336	chr17	35749201	35749400	+	0	NA	intron (NM_139285, intron 2 of 5)	intron (NM_139285, intron 2 of 5)	3939	NM_139285	246176		NM_139285	ENSG00000270765	GAS2L2	CILD41|GAR17	growth arrest specific 2 like 2	protein-coding
214723	chr7	151021271	151021430	+	0	NA	intron (NR_133652, intron 4 of 16)	intron (NR_133652, intron 4 of 16)	3149	NM_001317056	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
143216	chr20	24964651	24964750	+	0	NA	intron (NM_020531, intron 8 of 8)	intron (NM_020531, intron 8 of 8)	15431	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
234771	chrX	23789621	23790080	+	0	NA	Intergenic	Intergenic	6692	NM_002970	6303		NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
108270	chr18	63271921	63272180	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	47719	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
223047	chr8	143372751	143372850	+	0	NA	intron (NM_052924, intron 1 of 14)	intron (NM_052924, intron 1 of 14)	3924	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
13213	chr1	112645051	112645550	+	0	NA	intron (NM_006135, intron 1 of 9)	intron (NM_006135, intron 1 of 9)	25468	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
88145	chr16	81630071	81630230	+	0	NA	intron (NM_030629, intron 3 of 20)	MIR|SINE|MIR	18802	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
158474	chr22	50748471	50748830	+	0	NA	Intergenic	Intergenic	-8436	NR_026981	284942		NM_203302	ENSG00000291064	RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
55262	chr12	102385371	102385530	+	0	NA	Intergenic	L1MCa|LINE|L1	93100	NM_001111284	3479		NM_000618	ENSG00000017427	IGF1	IGF|IGF-I|IGFI|MGF	insulin like growth factor 1	protein-coding
195833	chr6	41367871	41368030	+	0	NA	Intergenic	Intergenic	32342	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
204258	chr7	2627851	2628850	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-3636	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
131529	chr2	96593321	96593630	+	0	NA	non-coding (NR_047656, exon 20 of 20)	non-coding (NR_047656, exon 20 of 20)	44516	NR_047658	55683		NM_017991	ENSG00000114982	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
34782	chr11	213151	213880	+	0	NA	intron (NM_001286134, intron 9 of 9)	intron (NM_001286134, intron 9 of 9)	4179	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
201527	chr6	149138121	149138380	+	0	NA	Intergenic	Intergenic	-79674	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
30091	chr10	73920151	73920680	+	0	NA	intron (NR_160937, intron 1 of 5)	intron (NR_160937, intron 1 of 5)	2362	NR_160937	414236		NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 putative open reading frame 55	ncRNA
32659	chr10	103810951	103811050	+	0	NA	intron (NM_014631, intron 1 of 13)	intron (NM_014631, intron 1 of 13)	44406	NM_014631	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
123244	chr19	53186501	53187330	+	0	NA	intron (NM_024733, intron 1 of 3)	SVA_E|Retroposon|SVA	6443	NM_024733	79788		NM_024733	ENSG00000197497	ZNF665	ZFP160L	zinc finger protein 665	protein-coding
105659	chr18	2578521	2578830	+	0	NA	intron (NM_006101, intron 5 of 16)	intron (NM_006101, intron 5 of 16)	7118	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
235657	chrX	48531401	48532430	+	0	NA	Intergenic	MLT1B-int|LTR|ERVL-MaLR	-7704	NM_001348262	4943		NM_002536	ENSG00000068354	TBC1D25	MG81|OATL1	TBC1 domain family member 25	protein-coding
64251	chr14	23162751	23163050	+	0	NA	intron (NM_012244, intron 3 of 10)	intron (NM_012244, intron 3 of 10)	-7442	NM_001267036	23428		NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
36393	chr11	4045151	4045450	+	0	NA	intron (NM_001382570, intron 3 of 9)	intron (NM_001382570, intron 3 of 9)	-49385	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
224921	chr9	32581001	32581800	+	0	NA	Intergenic	Intergenic	-8216	NM_001199987	4712		NM_002493	ENSG00000165264	NDUFB6	B17|CI	NADH:ubiquinone oxidoreductase subunit B6	protein-coding
38257	chr11	36558421	36559080	+	0	NA	intron (NM_001377277, intron 3 of 4)	L1M2|LINE|L1	-9257	NM_000448	5896		NM_000448	ENSG00000166349	RAG1	RAG-1|RNF74	recombination activating 1	protein-coding
189827	chr5	177083151	177083750	+	0	NA	Intergenic	AluSz|SINE|Alu	-3465	NM_001354984	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
83047	chr16	22325371	22326480	+	0	NA	exon (NM_001258034, exon 17 of 20).2	exon (NM_001258034, exon 17 of 20).2	28516	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
51599	chr12	52789951	52790330	+	0	NA	exon (NM_057088, exon 9 of 9)	exon (NM_057088, exon 9 of 9)	5977	NM_057088	3850		NM_057088	ENSG00000186442	KRT3	CK3|K3|MECD2	keratin 3	protein-coding
55591	chr12	106583551	106584230	+	0	NA	intron (NM_213594, intron 1 of 17)	CpG	886	NM_213594	5992		NM_002920	ENSG00000111783	RFX4	NYD-SP10	regulatory factor X4	protein-coding
1584	chr1	3598751	3599250	+	0	NA	intron (NM_001409, intron 2 of 36)	intron (NM_001409, intron 2 of 36)	12508	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
217076	chr8	23692501	23692900	+	0	NA	Intergenic	Intergenic	-9762	NM_006167	4824		NM_006167	ENSG00000167034	NKX3-1	BAPX2|NKX3|NKX3.1|NKX3A	NK3 homeobox 1	protein-coding
168926	chr3	152353271	152353430	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-12360	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
169236	chr3	157142351	157142900	+	0	NA	TTS (NM_001308185)	TTS (NM_001308185)	17522	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
25332	chr10	6234421	6234680	+	0	NA	non-coding (NR_136554, exon 12 of 12)	non-coding (NR_136554, exon 12 of 12)	31618	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
235907	chrX	53073301	53073580	+	0	NA	intron (NM_018969, intron 1 of 1)	intron (NM_018969, intron 1 of 1)	-8927	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
105909	chr18	3445001	3445350	+	0	NA	intron (NM_174886, intron 2 of 3)	L2c|LINE|L2	-2367	NM_173207	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
133435	chr2	119362971	119363330	+	0	NA	intron (NM_001322329, intron 1 of 6)	AluY|SINE|Alu	3592	NM_001017927	130355		NM_001017927	ENSG00000186132	C2orf76	AIM29	chromosome 2 open reading frame 76	protein-coding
214624	chr7	150732951	150733930	+	0	NA	intron (NM_001199577, intron 3 of 5)	intron (NM_001199577, intron 3 of 5)	-3908	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
20703	chr1	200667971	200668430	+	0	NA	intron (NM_001349803, intron 1 of 6)	AluY|SINE|Alu	-1260	NM_001349800	83479		NM_031306	ENSG00000118197	DDX59	OFD5|ZNHIT5	DEAD-box helicase 59	protein-coding
159745	chr3	16148901	16149100	+	0	NA	Intergenic	Intergenic	-25680	NM_054110	117248		NM_054110	ENSG00000131386	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
201370	chr6	144819851	144819950	+	0	NA	intron (NM_001375323, intron 15 of 24)	(CTC)n|Simple_repeat|Simple_repeat	236752	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
126669	chr2	29119151	29119600	+	0	NA	intron (NM_024692, intron 1 of 15)	intron (NM_024692, intron 1 of 15)	3960	NM_024692	79745		NM_024692	ENSG00000115295	CLIP4	RSNL2	CAP-Gly domain containing linker protein family member 4	protein-coding
14970	chr1	147959771	147960000	+	0	NA	intron (NM_016334, intron 7 of 13)	intron (NM_016334, intron 7 of 13)	31465	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
3677	chr1	16496051	16496530	+	0	NA	Intergenic	AluSz|SINE|Alu	-3589	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
201845	chr6	150167801	150168050	+	0	NA	intron (NM_030949, intron 1 of 3)	intron (NM_030949, intron 1 of 3)	24881	NM_030949	81706		NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1 regulatory inhibitor subunit 14C	protein-coding
199086	chr6	111662621	111663330	+	0	NA	intron (NM_001370529, intron 11 of 11)	intron (NM_001370529, intron 11 of 11)	-56701	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
189545	chr5	173973021	173973950	+	0	NA	Intergenic	Intergenic	-15685	NM_001144954	133491		NM_001144954	ENSG00000185056	C5orf47	-	chromosome 5 open reading frame 47	protein-coding
237462	chrX	119757151	119757530	+	0	NA	Intergenic	Intergenic	-1248	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
179130	chr4	169009251	169010880	+	0	NA	exon (NM_032783, exon 1 of 5)	exon (NM_032783, exon 1 of 5)	190	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
39173	chr11	57354721	57354980	+	0	NA	intron (NM_002559, intron 8 of 11)	LTR33|LTR|ERVL	16498	NM_002559	5024		NM_002559	ENSG00000109991	P2RX3	P2X3	purinergic receptor P2X 3	protein-coding
73361	chr15	42401651	42401750	+	0	NA	promoter-TSS (NM_173088)	promoter-TSS (NM_173088)	-690	NM_173088	825		NM_000070	ENSG00000092529	CAPN3	CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94	calpain 3	protein-coding
216557	chr8	21904101	21904730	+	0	NA	Intergenic	Intergenic	9275	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
147961	chr20	62972171	62972900	+	0	NA	Intergenic	CpG	19826	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
157960	chr22	49811171	49811950	+	0	NA	intron (NM_001304808, intron 2 of 12)	MER44B|DNA|TcMar-Tigger	12771	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
129783	chr2	71228601	71229180	+	0	NA	Intergenic	L2a|LINE|L2	-1787	NM_020459	400961		NM_020459	ENSG00000124374	PAIP2B	-	poly(A) binding protein interacting protein 2B	protein-coding
230746	chr9	128884001	128884600	+	0	NA	intron (NM_001127244, intron 1 of 3)	intron (NM_001127244, intron 1 of 3)	-1777	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
144153	chr20	34052871	34053230	+	0	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	3931	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
156275	chr22	40451051	40451600	+	0	NA	intron (NM_001282661, intron 4 of 13)	intron (NM_001282661, intron 4 of 13)	12115	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
126580	chr2	28758151	28758800	+	0	NA	intron (NM_206876, intron 2 of 8)	intron (NM_206876, intron 2 of 8)	6645	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
95907	chr17	38902751	38903300	+	0	NA	intron (NM_006148, intron 4 of 6)	intron (NM_006148, intron 4 of 6)	-11954	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
207874	chr7	50379171	50379830	+	0	NA	intron (NM_001220771, intron 3 of 3)	MIRc|SINE|MIR	60452	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
41697	chr11	66640851	66640950	+	0	NA	intron (NM_001198844, intron 2 of 2)	Tigger4a|DNA|TcMar-Tigger	2197	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
109662	chr19	1015921	1016380	+	0	NA	intron (NM_033420, intron 1 of 9)	intron (NM_033420, intron 1 of 9)	4973	NM_001033026	91304		NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
89766	chr16	89460351	89461550	+	0	NA	intron (NM_001256182, intron 1 of 13)	L1MB4|LINE|L1	29611	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
35277	chr11	925101	926780	+	0	NA	promoter-TSS (NM_012305).3	promoter-TSS (NM_012305).3	70	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
215248	chr7	156925971	156926680	+	0	NA	Intergenic	Intergenic	-23387	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
237575	chrX	123514371	123514630	+	0	NA	Intergenic	Intergenic	218552	NM_001081550	57187		NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|XLID12|dJ506G2.1|hTREX120	THO complex subunit 2	protein-coding
10070	chr1	58775771	58776330	+	0	NA	Intergenic	Intergenic	7997	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
147855	chr20	62810271	62810630	+	0	NA	intron (NM_007346, intron 4 of 6)	intron (NM_007346, intron 4 of 6)	-4863	NR_102430	101409261		NR_102430		OGFR-AS1	-	OGFR antisense RNA 1	ncRNA
138456	chr2	206250121	206250600	+	0	NA	intron (NR_104359, intron 2 of 5).2	intron (NR_104359, intron 2 of 5).2	-24303	NM_020923	57683		NM_020923	ENSG00000204186	ZDBF2	Slx9	zinc finger DBF-type containing 2	protein-coding
173792	chr4	17618421	17618680	+	0	NA	intron (NM_025205, intron 1 of 3)	AluSc8|SINE|Alu	3909	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
47115	chr12	677621	678150	+	0	NA	Intergenic	AluSp|SINE|Alu	-14440	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
114649	chr19	13024371	13025050	+	0	NA	promoter-TSS (NM_001365984)	promoter-TSS (NM_001365984)	-69	NM_001365984	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
74484	chr15	59996621	59997450	+	0	NA	Intergenic	Intergenic	-7276	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
158102	chr22	50013151	50013400	+	0	NA	promoter-TSS (NM_001001694)	promoter-TSS (NM_001001694)	-510	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
119981	chr19	41905951	41906400	+	0	NA	intron (NM_004706, intron 26 of 28)	intron (NM_004706, intron 26 of 28)	21732	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
231544	chr9	131473751	131474050	+	0	NA	intron (NM_001384823, intron 15 of 29)	intron (NM_001384823, intron 15 of 29)	-11765	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
28897	chr10	62855001	62855200	+	0	NA	Intergenic	Intergenic	-35933	NM_001136178	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
127413	chr2	42107951	42108430	+	0	NA	Intergenic	L2a|LINE|L2	60169	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
140662	chr2	233976671	233977500	+	0	NA	intron (NM_024080, intron 17 of 25)	intron (NM_024080, intron 17 of 25)	59712	NM_024080	79054		NM_024080	ENSG00000144481	TRPM8	LTRPC6|LTrpC-6|TRPP8|trp-p8	transient receptor potential cation channel subfamily M member 8	protein-coding
184850	chr5	111734101	111734300	+	0	NA	non-coding (NR_040093, exon 6 of 7)	non-coding (NR_040093, exon 6 of 7)	22051	NM_001142483	9315		NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
108543	chr18	74497501	74497700	+	0	NA	intron (NM_001370249, intron 2 of 13)	AluJb|SINE|Alu	1237	NM_001370254	55748		NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	carnosine dipeptidase 2	protein-coding
18039	chr1	160606901	160607800	+	0	NA	TTS (NM_003037)	TTS (NM_003037)	-27834	NM_001184882	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
223229	chr8	143607551	143607800	+	0	NA	intron (NM_023078, intron 2 of 5)	(CACA)n|Simple_repeat|Simple_repeat	1900	NM_001329866	65263		NM_023078	ENSG00000104524	PYCR3	PYCRL	pyrroline-5-carboxylate reductase 3	protein-coding
67905	chr14	74583171	74583330	+	0	NA	intron (NM_000428, intron 3 of 35)	intron (NM_000428, intron 3 of 35)	28987	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
78737	chr15	98801051	98801550	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	16874	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
129684	chr2	70471221	70471480	+	0	NA	intron (NR_046798, intron 1 of 2)	intron (NR_046798, intron 1 of 2)	10290	NR_046798	100874273		NR_046798	ENSG00000224606	TGFA-IT1	-	TGFA intronic transcript 1	ncRNA
2078	chr1	7938101	7938550	+	0	NA	exon (NM_001561, exon 4 of 8)	exon (NM_001561, exon 4 of 8)	2514	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
57153	chr12	121256521	121256780	+	0	NA	intron (NM_172215, intron 7 of 15)	L1MB5|LINE|L1	17935	NM_001270486	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
79880	chr16	1535451	1536400	+	0	NA	intron (NM_024600, intron 1 of 2)	intron (NM_024600, intron 1 of 2)	2259	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
30321	chr10	75409051	75409730	+	0	NA	TTS (NR_024421)	TTS (NR_024421)	233	NR_110304	101929234		NR_110304		LOC101929234	-	uncharacterized LOC101929234	ncRNA
21176	chr1	203792051	203792350	+	0	NA	Intergenic	AluSz|SINE|Alu	-3423	NM_001376342	9877		NM_014827	ENSG00000058673	ZC3H11A	ZC3HDC11A	zinc finger CCCH-type containing 11A	protein-coding
58762	chr12	132684901	132685800	+	0	NA	intron (NM_006231, intron 1 of 48)	MIRb|SINE|MIR	1992	NM_006231	5426		NM_006231	ENSG00000177084	POLE	CRCS12|FILS|IMAGEI|POLE1	DNA polymerase epsilon, catalytic subunit	protein-coding
225488	chr9	35639651	35639750	+	0	NA	Intergenic	Intergenic	-6570	NR_135130	101926948		NR_135130		LOC101926948	-	uncharacterized LOC101926948	ncRNA
24141	chr1	235844771	235844930	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	8210	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
66417	chr14	61517601	61517880	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	52454	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
51825	chr12	53447771	53448200	+	0	NA	Intergenic	Intergenic	-4117	NM_001128914	5094		NM_005016	ENSG00000197111	PCBP2	HNRNPE2|HNRPE2|hnRNP-E2	poly(rC) binding protein 2	protein-coding
90222	chr17	514621	515050	+	0	NA	3' UTR (NM_001128159, exon 22 of 22).2	3' UTR (NM_001128159, exon 22 of 22).2	-68895	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
87231	chr16	69589001	69589200	+	0	NA	intron (NM_138713, intron 2 of 14)	AluSp|SINE|Alu	23134	NM_173215	10725		NM_006599	ENSG00000102908	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T cells 5	protein-coding
22572	chr1	222673651	222673950	+	0	NA	intron (NM_022831, intron 7 of 9)	intron (NM_022831, intron 7 of 9)	29497	NM_001300867	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
77016	chr15	78543221	78543480	+	0	NA	intron (NM_001330676, intron 4 of 8)	intron (NM_001330676, intron 4 of 8)	2664	NM_001330676	5685		NM_002789	ENSG00000041357	PSMA4	HC9|HsT17706|PSC9	proteasome 20S subunit alpha 4	protein-coding
190090	chr5	177810521	177810780	+	0	NA	Intergenic	L1MDb|LINE|L1	-1143	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
228403	chr9	99166371	99166730	+	0	NA	Intergenic	AluSx|SINE|Alu	55392	NM_033087	85365		NM_033087	ENSG00000119523	ALG2	CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2	ALG2 alpha-1,3/1,6-mannosyltransferase	protein-coding
198318	chr6	100878721	100879180	+	0	NA	intron (NM_001284271, intron 1 of 12)	MER21B|LTR|ERVL	2379	NM_006828	10973		NM_006828	ENSG00000112249	ASCC3	ASC1p200|HELIC1|MRT81|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
6699	chr1	29176671	29177350	+	0	NA	intron (NM_005626, intron 1 of 5)	intron (NM_005626, intron 1 of 5)	4890	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
36023	chr11	2916601	2916800	+	0	NA	exon (NM_002555, exon 6 of 11).2	exon (NM_002555, exon 6 of 11).2	12720	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
217049	chr8	23296121	23296950	+	0	NA	TTS (NM_001136108)	TTS (NM_001136108)	8427	NM_001136108	203069		NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
154582	chr22	36272021	36272780	+	0	NA	Intergenic	AluYf1|SINE|Alu	14507	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
232775	chr9	136686401	136688200	+	0	NA	exon (NM_001012727, exon 1 of 5)	exon (NM_001012727, exon 1 of 5)	157	NM_001012727	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
120944	chr19	45682851	45683780	+	0	NA	3' UTR (NM_001308418, exon 13 of 13)	3' UTR (NM_001308418, exon 13 of 13)	-8307	NR_037512	100500845		NR_037512	ENSG00000283212	MIR642B	mir-642b	microRNA 642b	ncRNA
191388	chr6	7725971	7726530	+	0	NA	5' UTR (NM_001718, exon 1 of 7)	5' UTR (NM_001718, exon 1 of 7)	151	NM_001718	654		NM_001718	ENSG00000153162	BMP6	IO|VGR|VGR1	bone morphogenetic protein 6	protein-coding
182648	chr5	67165741	67167880	+	0	NA	exon (NM_001290226, exon 27 of 27)	exon (NM_001290226, exon 27 of 27)	29989	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
171772	chr4	54471	54630	+	0	NA	intron (NM_001286053, intron 1 of 1)	intron (NM_001286053, intron 1 of 1)	1229	NM_182524	152687		NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding
152917	chr22	22772101	22772300	+	0	NA	Intergenic	Intergenic	-50576	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
37385	chr11	17014201	17015630	+	0	NA	promoter-TSS (NM_001329631)	promoter-TSS (NM_001329631)	-501	NM_001329631	144100		NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding
112997	chr19	7900051	7900350	+	0	NA	exon (NM_025061, exon 3 of 3)	exon (NM_025061, exon 3 of 3)	-3677	NM_001297556	5609		NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
166865	chr3	123521321	123522080	+	0	NA	intron (NM_001329784, intron 6 of 8)	intron (NM_001329784, intron 6 of 8)	62917	NM_001329787	201562		NM_198402	ENSG00000206527	HACD2	PTPLB	3-hydroxyacyl-CoA dehydratase 2	protein-coding
24848	chr10	450201	451700	+	0	NA	intron (NM_014974, intron 3 of 36)	intron (NM_014974, intron 3 of 36)	-177614	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
225615	chr9	36194751	36195050	+	0	NA	intron (NM_001184762, intron 1 of 2)	intron (NM_001184762, intron 1 of 2)	3979	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
109916	chr19	1293901	1294950	+	0	NA	intron (NM_001405, intron 1 of 3)	intron (NM_001405, intron 1 of 3)	8552	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
217192	chr8	26322071	26322230	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	28934	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
110641	chr19	2231151	2231250	+	0	NA	3' UTR (NM_032482, exon 28 of 28)	3' UTR (NM_032482, exon 28 of 28)	2949	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
146247	chr20	48861571	48861730	+	0	NA	Intergenic	Intergenic	-33651	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
92576	chr17	9231171	9231530	+	0	NA	intron (NM_004822, intron 6 of 6)	intron (NM_004822, intron 6 of 6)	-52232	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
226016	chr9	41650471	41650830	+	0	NA	Intergenic	Intergenic	2976	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
185456	chr5	131267951	131268780	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	4312	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
20226	chr1	193177401	193177800	+	0	NA	intron (NM_024529, intron 10 of 16)	MIRb|SINE|MIR	9013	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
117942	chr19	33194021	33194280	+	0	NA	promoter-TSS (NM_002333)	promoter-TSS (NM_002333)	-180	NM_002333	4037		NM_002333	ENSG00000130881	LRP3	-	LDL receptor related protein 3	protein-coding
102478	chr17	75734801	75735000	+	0	NA	intron (NM_001005619, intron 12 of 38)	intron (NM_001005619, intron 12 of 38)	10204	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
91172	chr17	3799071	3799780	+	0	NA	intron (NM_002208, intron 1 of 30)	intron (NM_002208, intron 1 of 30)	1763	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
12855	chr1	110081001	110081280	+	0	NA	Intergenic	Intergenic	-1548	NR_126382	104355139		NR_126382	ENSG00000258673	LINC01397	-	long intergenic non-protein coding RNA 1397	ncRNA
13335	chr1	113799371	113799530	+	0	NA	intron (NM_018364, intron 1 of 6)	L2c|LINE|L2	13026	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
3625	chr1	16377171	16377330	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	10008	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
212147	chr7	116591501	116592000	+	0	NA	intron (NR_165033, intron 2 of 4)	MIR3|SINE|MIR	22907	NR_120506	100996266		NR_120506		COMETT	COMET|LINC01510	cytosolic oncogenic antisense to MET transcript	ncRNA
166601	chr3	119238971	119239600	+	0	NA	intron (NM_212543, intron 1 of 8)	AluSz|SINE|Alu	1593	NM_003778	8702		NM_003778	ENSG00000121578	B4GALT4	B4Gal-T4|beta4Gal-T4	beta-1,4-galactosyltransferase 4	protein-coding
97580	chr17	44099951	44100450	+	0	NA	intron (NM_001382393, intron 3 of 26)	intron (NM_001382393, intron 3 of 26)	-15712	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
146323	chr20	49224221	49224980	+	0	NA	intron (NM_017895, intron 4 of 20)	AluSx|SINE|Alu	5184	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
145558	chr20	44219321	44220130	+	0	NA	intron (NR_038337, intron 2 of 2)	L2|LINE|L2	8639	NR_038337	100505783		NR_038337	ENSG00000223891	OSER1-DT	OSER1-AS1	OSER1 divergent transcript	ncRNA
173547	chr4	10083951	10084050	+	0	NA	intron (NM_017491, intron 9 of 14)	MIR3|SINE|MIR	-5308	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
220194	chr8	95305401	95305630	+	0	NA	intron (NR_038208, intron 2 of 3)	intron (NR_038208, intron 2 of 3)	-36314	NM_177965	157657		NM_177965	ENSG00000156172	CFAP418	BBS21|C8orf37|CORD16|FAP418|MOT25|RP64|smalltalk	cilia and flagella associated protein 418	protein-coding
235878	chrX	51743121	51743780	+	0	NA	promoter-TSS (NM_018094)	promoter-TSS (NM_018094)	8	NM_018094	23708		NM_018094	ENSG00000189369	GSPT2	ERF3B|GST2	G1 to S phase transition 2	protein-coding
86268	chr16	58499321	58500280	+	0	NA	promoter-TSS (NM_001242836)	promoter-TSS (NM_001242836)	-343	NR_040072	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
23597	chr1	229953971	229954230	+	0	NA	Intergenic	Intergenic	-48617	NR_135116	101927532		NR_135116	ENSG00000228058	LINC01736	-	long intergenic non-protein coding RNA 1736	ncRNA
35757	chr11	2145451	2145900	+	0	NA	TTS (NM_001042376)	TTS (NM_001042376)	3928	NM_001007139	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
155627	chr22	38874971	38875150	+	0	NA	Intergenic	L2c|LINE|L2	-2844	NM_014292	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
166951	chr3	125310401	125311300	+	0	NA	intron (NM_001348424, intron 5 of 9)	L1MB2|LINE|L1	46430	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
43736	chr11	86063651	86063830	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	5344	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
47534	chr12	4271401	4273200	+	0	NA	intron (NR_149145, intron 1 of 3)	CpG	-1462	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
203390	chr6	170575351	170575450	+	0	NA	TTS (NM_001199462)	TTS (NM_001199462)	9237	NM_002598	5134		NM_002598	ENSG00000071994	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
107826	chr18	54217771	54218000	+	0	NA	intron (NM_003927, intron 1 of 6)	intron (NM_003927, intron 1 of 6)	4527	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
222925	chr8	142988321	142988780	+	0	NA	intron (NR_026913, intron 1 of 1)	MLT1F1|LTR|ERVL-MaLR	-7278	NR_102426	100128627		NR_102426		CDC42P3	-	CDC42 pseudogene 3	pseudo
140916	chr2	237709251	237709550	+	0	NA	intron (NM_001137551, intron 2 of 11)	intron (NM_001137551, intron 2 of 11)	17195	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
38777	chr11	47182471	47183680	+	0	NA	intron (NM_016223, intron 1 of 10)	intron (NM_016223, intron 1 of 10)	2806	NM_001184975	29763		NM_016223	ENSG00000165912	PACSIN3	SDPIII	protein kinase C and casein kinase substrate in neurons 3	protein-coding
90714	chr17	1869471	1869630	+	0	NA	intron (NM_001355120, intron 5 of 16)	AluSq2|SINE|Alu	39545	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
127295	chr2	38746701	38747430	+	0	NA	intron (NM_001363802, intron 5 of 7)	intron (NM_001363802, intron 5 of 7)	4296	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
146029	chr20	47272751	47273530	+	0	NA	intron (NM_183047, intron 11 of 22)	MER58B|DNA|hAT-Charlie	-45362	NR_024594	100131496		NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
61746	chr13	74232621	74233380	+	0	NA	intron (NR_144451, intron 1 of 1)	AluSc8|SINE|Alu	1556	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
189321	chr5	172150501	172151900	+	0	NA	intron (NM_005990, intron 2 of 18)	MIR|SINE|MIR	37024	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
42791	chr11	72783651	72783950	+	0	NA	TTS (NR_039841)	TTS (NR_039841)	270	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
64771	chr14	34629561	34631000	+	0	NA	promoter-TSS (NM_001366519)	promoter-TSS (NM_001366519)	-132	NM_001366519	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
60048	chr13	32811101	32811500	+	0	NA	intron (NR_047020, intron 4 of 4)	intron (NR_047020, intron 4 of 4)	100352	NR_047020	100874167		NR_047020		LINC00423	-	long intergenic non-protein coding RNA 423	ncRNA
175185	chr4	56433621	56434000	+	0	NA	intron (NR_156493, intron 1 of 10)	AluSc|SINE|Alu	1805	NM_002703	5471		NM_002703	ENSG00000128059	PPAT	ATASE|GPAT|PRAT	phosphoribosyl pyrophosphate amidotransferase	protein-coding
182960	chr5	71445621	71446150	+	0	NA	intron (NR_134269, intron 1 of 2)	intron (NR_134269, intron 1 of 2)	451	NR_134268	102724392		NR_134268		LINC02197	-	long intergenic non-protein coding RNA 2197	ncRNA
90675	chr17	1714821	1715590	+	0	NA	intron (NR_028504, intron 1 of 3)	intron (NR_028504, intron 1 of 3)	1067	NR_028505	84981		NM_032895	ENSG00000186594	MIR22HG	C17orf91	MIR22 host gene	ncRNA
149777	chr21	34865621	34866130	+	0	NA	intron (NM_001754, intron 5 of 8)	intron (NM_001754, intron 5 of 8)	22824	NM_001122607	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
214170	chr7	144822271	144822830	+	0	NA	intron (NR_146934, intron 1 of 6)	MIRb|SINE|MIR	13390	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
199534	chr6	118778271	118778750	+	0	NA	Intergenic	Intergenic	-4198	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
118158	chr19	35021801	35022200	+	0	NA	exon (NM_001320035, exon 15 of 18)	exon (NM_001320035, exon 15 of 18)	-8470	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
173825	chr4	18366971	18367230	+	0	NA	Intergenic	L1PA16|LINE|L1	-345225	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
114676	chr19	13092471	13093100	+	0	NA	intron (NM_001271043, intron 10 of 10)	intron (NM_001271043, intron 10 of 10)	10073	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
160394	chr3	28059551	28059730	+	0	NA	Intergenic	L1PA3|LINE|L1	-181979	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
10463	chr1	66329701	66329900	+	0	NA	intron (NM_001037340, intron 5 of 14)	MIRb|SINE|MIR	-2308	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
220929	chr8	108248051	108249500	+	0	NA	promoter-TSS (NM_001568)	promoter-TSS (NM_001568)	-58	NM_001568	3646		NM_001568	ENSG00000104408	EIF3E	EIF3-P48|EIF3S6|INT6|eIF3-p46	eukaryotic translation initiation factor 3 subunit E	protein-coding
117024	chr19	18921051	18921150	+	0	NA	intron (NM_019070, intron 2 of 12)	AluSp|SINE|Alu	1385	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
42982	chr11	73874721	73874980	+	0	NA	intron (NM_016565, intron 1 of 1)	AluSg4|SINE|Alu	-1849	NM_001267806	80227		NM_025155	ENSG00000175575	PAAF1	PAAF|Rpn14|WDR71	proteasomal ATPase associated factor 1	protein-coding
217343	chr8	27726951	27727560	+	0	NA	Intergenic	Intergenic	-25488	NR_037418	100500871		NR_037418	ENSG00000265075	MIR3622B	-	microRNA 3622b	ncRNA
116473	chr19	18100851	18101730	+	0	NA	intron (NM_015016, intron 1 of 26)	intron (NM_015016, intron 1 of 26)	-2474	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
64948	chr14	35826031	35827330	+	0	NA	intron (NM_032352, intron 1 of 9)	CpG	342	NM_032352	84312		NM_032352	ENSG00000100916	BRMS1L	BRMS1|p40	BRMS1 like transcriptional repressor	protein-coding
65033	chr14	39176571	39176730	+	0	NA	intron (NM_002687, intron 3 of 8)	intron (NM_002687, intron 3 of 8)	1396	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
166739	chr3	121755601	121755800	+	0	NA	Intergenic	L1MC2|LINE|L1	-5933	NM_001256488	2804		NM_004487	ENSG00000173230	GOLGB1	GCP|GCP372|GOLIM1	golgin B1	protein-coding
75237	chr15	64882021	64882690	+	0	NA	Intergenic	Intergenic	-29547	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
176337	chr4	88231521	88231930	+	0	NA	promoter-TSS (NM_001257386)	promoter-TSS (NM_001257386)	-99	NM_001257386	9429		NM_004827	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|CDw388|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1	ATP binding cassette subfamily G member 2 (JR blood group)	protein-coding
84407	chr16	30348101	30348500	+	0	NA	Intergenic	AluJb|SINE|Alu	6634	NM_001243646	10421		NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
230779	chr9	128920171	128920730	+	0	NA	promoter-TSS (NM_001100876)	promoter-TSS (NM_001100876)	-532	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
136421	chr2	176268201	176268400	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-1142	NM_001006635	10651		NM_006554	ENSG00000128654	MTX2	MDPS|metaxin-2	metaxin 2	protein-coding
217227	chr8	26571051	26571650	+	0	NA	intron (NM_001197293, intron 1 of 13)	intron (NM_001197293, intron 1 of 13)	-6595	NM_001386	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
100777	chr17	64000351	64001130	+	0	NA	promoter-TSS (NR_126169)	promoter-TSS (NR_126169)	-841	NR_126169	400612		NR_126169	ENSG00000264954	PRR29-AS1	-	PRR29 antisense RNA 1	ncRNA
79133	chr16	226201	226400	+	0	NA	intron (NM_018032, intron 2 of 8)	intron (NM_018032, intron 2 of 8)	3149	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
44523	chr11	107689601	107689900	+	0	NA	Intergenic	Intergenic	22306	NM_003063	6588		NM_003063	ENSG00000170290	SLN	-	sarcolipin	protein-coding
39008	chr11	47726101	47726300	+	0	NA	intron (NM_015308, intron 12 of 16)	intron (NM_015308, intron 12 of 16)	-10831	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
120022	chr19	41946671	41946830	+	0	NA	Intergenic	Intergenic	12571	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
113484	chr19	10009221	10010730	+	0	NA	intron (NM_015719, intron 1 of 66)	intron (NM_015719, intron 1 of 66)	529	NM_015719	50509		NM_015719	ENSG00000080573	COL5A3	-	collagen type V alpha 3 chain	protein-coding
2689	chr1	10631071	10631730	+	0	NA	TTS (NM_004565)	TTS (NM_004565)	156450	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
7673	chr1	35771171	35771330	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1272	NM_001330490	63967		NM_022111	ENSG00000092853	CLSPN	-	claspin	protein-coding
196630	chr6	44272201	44272700	+	0	NA	intron (NM_001137560, intron 1 of 2)	intron (NM_001137560, intron 1 of 2)	2000	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
184782	chr5	110754921	110755180	+	0	NA	intron (NM_001303249, intron 5 of 7)	intron (NM_001303249, intron 5 of 7)	16043	NM_138773	91137		NM_138773	ENSG00000164209	SLC25A46	HMSN6B|PCH1E	solute carrier family 25 member 46	protein-coding
8217	chr1	39678651	39679300	+	0	NA	3' UTR (NM_001282397, exon 3 of 3)	3' UTR (NM_001282397, exon 3 of 3)	-6937	NM_032526	84618		NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
53376	chr12	64677851	64679000	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-55820	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
85693	chr16	56515651	56515950	+	0	NA	intron (NR_165297, intron 1 of 16)	intron (NR_165297, intron 1 of 16)	4224	NR_165297	583		NM_031885	ENSG00000125124	BBS2	BBS|RP74	Bardet-Biedl syndrome 2	protein-coding
232498	chr9	136261251	136261350	+	0	NA	intron (NM_001378188, intron 19 of 25)	intron (NM_001378188, intron 19 of 25)	-15488	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
223096	chr8	143427601	143428700	+	0	NA	TTS (NM_201589)	TTS (NM_201589)	2582	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
16403	chr1	154440671	154440830	+	0	NA	intron (NM_181359, intron 6 of 8)	AluSz6|SINE|Alu	-34186	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
61542	chr13	60397201	60398450	+	0	NA	intron (NM_001146070, intron 1 of 13)	CpG	605	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
111295	chr19	3577951	3578050	+	0	NA	exon (NM_006339, exon 9 of 10)	exon (NM_006339, exon 9 of 10)	5056	NM_006339	10362		NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
151215	chr21	45222351	45222450	+	0	NA	non-coding (NR_027672, exon 10 of 11)	non-coding (NR_027672, exon 10 of 11)	-11940	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
235950	chrX	53317451	53317830	+	0	NA	intron (NM_001111125, intron 1 of 14)	intron (NM_001111125, intron 1 of 14)	3710	NM_001111125	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
62146	chr13	95906121	95906200	+	0	NA	intron (NM_020121, intron 20 of 38)	L1ME3B|LINE|L1	147241	NM_020121	55757		NM_020121	ENSG00000102595	UGGT2	HUGT2|UGCGL2|UGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding
45199	chr11	117797001	117797950	+	0	NA	promoter-TSS (NM_001367904)	promoter-TSS (NM_001367904)	-259	NM_001367904	57453		NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
41191	chr11	65637721	65639200	+	0	NA	intron (NM_006747, intron 1 of 15)	intron (NM_006747, intron 1 of 15)	359	NM_006747	6494		NM_006747	ENSG00000213445	SIPA1	SPA1	signal-induced proliferation-associated 1	protein-coding
17206	chr1	156260451	156260750	+	0	NA	exon (NM_001323615, exon 14 of 21)	exon (NM_001323615, exon 14 of 21)	-12483	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
10599	chr1	67431951	67432050	+	0	NA	Intergenic	Intergenic	-1598	NM_001018069	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
115064	chr19	14195771	14197000	+	0	NA	intron (NM_001008701, intron 1 of 23)	AluSz|SINE|Alu	9784	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
105898	chr18	3304101	3304300	+	0	NA	Intergenic	L1PB3|LINE|L1	41481	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
155452	chr22	38472871	38473030	+	0	NA	intron (NM_006855, intron 1 of 4)	AluSp|SINE|Alu	4854	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
121024	chr19	45798801	45799800	+	0	NA	intron (NM_030785, intron 5 of 5)	intron (NM_030785, intron 5 of 5)	-6455	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
41898	chr11	67262571	67263700	+	0	NA	Intergenic	L2b|LINE|L2	-3338	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
224558	chr9	19407351	19407730	+	0	NA	Intergenic	Intergenic	-1469	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
206310	chr7	30176701	30177100	+	0	NA	Intergenic	Intergenic	41914	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
133845	chr2	128271821	128272280	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	46818	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
135106	chr2	157402951	157403500	+	0	NA	Intergenic	L1PA3|LINE|L1	-22716	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
56927	chr12	120449251	120449750	+	0	NA	intron (NM_176818, intron 2 of 3)	AluSx|SINE|Alu	3056	NR_033684	283459		NM_176818	ENSG00000257218	GATC	15E1.2|COXPD42	glutamyl-tRNA amidotransferase subunit C	protein-coding
212072	chr7	115013701	115014100	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	-65058	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
61054	chr13	48248471	48248630	+	0	NA	intron (NM_021999, intron 1 of 5)	L1M5|LINE|L1	15344	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
158285	chr22	50354721	50355200	+	0	NA	intron (NM_001351641, intron 1 of 23)	AluJo|SINE|Alu	11633	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
128570	chr2	60900571	60900930	+	0	NA	intron (NM_001291746, intron 3 of 9)	AluSp|SINE|Alu	19176	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133370	chr2	117834921	117835250	+	0	NA	intron (NR_158150, intron 1 of 6)	MLT1N2|LTR|ERVL-MaLR	1354	NR_158150	107985939		NR_158150		LOC107985939	-	uncharacterized LOC107985939	ncRNA
235600	chrX	47637551	47638000	+	0	NA	exon (NM_001114123, exon 5 of 7)	exon (NM_001114123, exon 5 of 7)	-7470	NM_002621	5199		NM_002621	ENSG00000126759	CFP	BFD|PFC|PFD|PROPERDIN	complement factor properdin	protein-coding
178692	chr4	152535601	152537100	+	0	NA	promoter-TSS (NR_033797)	promoter-TSS (NR_033797)	-78	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
126856	chr2	31933501	31933700	+	0	NA	intron (NR_163998, intron 3 of 8)	intron (NR_163998, intron 3 of 8)	77164	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
229378	chr9	121105251	121106100	+	0	NA	intron (NM_007018, intron 7 of 43)	L2b|LINE|L2	-16095	NR_163191	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
42266	chr11	68211451	68211800	+	0	NA	intron (NR_161378, intron 1 of 9)	intron (NR_161378, intron 1 of 9)	1671	NM_001369426	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
191626	chr6	12514151	12514250	+	0	NA	Intergenic	Intergenic	71204	NR_149140	101928309		NR_149140	ENSG00000234015	LINC02530	-	long intergenic non-protein coding RNA 2530	ncRNA
30629	chr10	80383001	80383350	+	0	NA	Intergenic	Intergenic	-24654	NM_001243779	84293		NM_032333	ENSG00000122378	PRXL2A	Adrx|C10orf58|FAM213A|PAMM	peroxiredoxin like 2A	protein-coding
176441	chr4	89286201	89286480	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	21460	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
215267	chr7	157006071	157006230	+	0	NA	promoter-TSS (NR_147077)	promoter-TSS (NR_147077)	-157	NR_147077	105375606		NR_147077	ENSG00000235029	MNX1-AS2	-	MNX1 antisense RNA 2	ncRNA
221227	chr8	121639201	121639430	+	0	NA	promoter-TSS (NR_002835)	promoter-TSS (NR_002835)	-31	NR_002835	594842		NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
136233	chr2	174599701	174600780	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-2009	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
167258	chr3	128591801	128592400	+	0	NA	Intergenic	Intergenic	-16014	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
20514	chr1	198671951	198672450	+	0	NA	intron (NM_002838, intron 2 of 32)	MLT1L|LTR|ERVL-MaLR	33160	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
66650	chr14	63874721	63875180	+	0	NA	intron (NM_015180, intron 1 of 114)	L3|LINE|CR1	21946	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
102795	chr17	76385721	76387100	+	0	NA	exon (NM_182965, exon 5 of 6)	exon (NM_182965, exon 5 of 6)	1132	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
144488	chr20	35647701	35648600	+	0	NA	TTS (NM_152838)	TTS (NM_152838)	5759	NM_003915	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
221343	chr8	123161101	123161850	+	0	NA	intron (NM_001363151, intron 19 of 19)	intron (NM_001363151, intron 19 of 19)	-17572	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
148005	chr20	63044101	63044500	+	0	NA	intron (NR_033369, intron 1 of 5)	CpG	6289	NR_033369	100144597		NR_033369	ENSG00000237119	LINC01056	-	long intergenic non-protein coding RNA 1056	ncRNA
14472	chr1	144484901	144486180	+	0	NA	Intergenic	Intergenic	-23871	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
103544	chr17	78660901	78661530	+	0	NA	Intergenic	Intergenic	-29158	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
190523	chr5	180605801	180606200	+	0	NA	intron (NM_182925, intron 29 of 29)	LTR16D|LTR|ERVL	-14501	NM_052863	92304		NM_052863	ENSG00000161055	SCGB3A1	HIN-1|HIN1|LU105|PnSP-2|UGRP2	secretoglobin family 3A member 1	protein-coding
187610	chr5	142952901	142953250	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-84165	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
73178	chr15	41492971	41495000	+	0	NA	exon (NM_002220, exon 1 of 7)	exon (NM_002220, exon 1 of 7)	111	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
180003	chr5	965801	966000	+	0	NA	Intergenic	Intergenic	31440	NR_104614	100506688		NM_001242737	ENSG00000215246	LINC02982	-	long intergenic non-protein coding RNA 2982	ncRNA
8177	chr1	39559251	39560430	+	0	NA	promoter-TSS (NR_003929)	promoter-TSS (NR_003929)	-142	NR_144356	728448		NR_003929	ENSG00000291129	PPIEL	PPIEP1	peptidylprolyl isomerase E like (pseudogene)	pseudo
112979	chr19	7867571	7867730	+	0	NA	Intergenic	Intergenic	6740	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
79705	chr16	1305351	1305450	+	0	NA	Intergenic	AluSz|SINE|Alu	-3752	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
29431	chr10	70324471	70325250	+	0	NA	intron (NR_103467, intron 1 of 2)	MIR|SINE|MIR	-40856	NM_022146	64106		NM_022146	ENSG00000148734	NPFFR1	GPR147|NPFF1|NPFF1R1|OT7T022	neuropeptide FF receptor 1	protein-coding
195443	chr6	36968421	36969630	+	0	NA	intron (NM_001271641, intron 11 of 11)	intron (NM_001271641, intron 11 of 11)	14287	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
73871	chr15	50347621	50348500	+	0	NA	TTS (NR_026891)	TTS (NR_026891)	-6114	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
194045	chr6	31846401	31846600	+	0	NA	Intergenic	AluSz6|SINE|Alu	9424	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
184586	chr5	102862921	102863380	+	0	NA	intron (NM_001364582, intron 1 of 24)	intron (NM_001364582, intron 1 of 24)	-2673	NM_138821	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
161392	chr3	41209471	41209830	+	0	NA	intron (NM_001098210, intron 1 of 15)	Tigger3b|DNA|TcMar-Tigger	10145	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
28698	chr10	60964171	60964380	+	0	NA	intron (NM_001350907, intron 2 of 12)	intron (NM_001350907, intron 2 of 12)	-19549	NM_001350905	9886		NM_014836	ENSG00000072422	RHOBTB1	-	Rho related BTB domain containing 1	protein-coding
182305	chr5	58459551	58461070	+	0	NA	promoter-TSS (NM_006622)	promoter-TSS (NM_006622)	-171	NM_001252226	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
144615	chr20	35838721	35839330	+	0	NA	intron (NM_016436, intron 2 of 17)	intron (NM_016436, intron 2 of 17)	67010	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
51070	chr12	49888821	49889280	+	0	NA	intron (NM_012306, intron 10 of 11)	intron (NM_012306, intron 10 of 11)	14850	NM_012306	23017		NM_012306	ENSG00000135472	FAIM2	LFG|LFG2|NGP35|NMP35|TMBIM2	Fas apoptotic inhibitory molecule 2	protein-coding
153473	chr22	25447501	25448700	+	0	NA	promoter-TSS (NR_033734)	promoter-TSS (NR_033734)	13	NR_033733	1416		NR_033733	ENSG00000291087	CRYBB2P1	CRYB2B	crystallin beta B2 pseudogene 1	pseudo
38531	chr11	45898401	45898730	+	0	NA	intron (NM_005456, intron 2 of 11)	intron (NM_005456, intron 2 of 11)	8706	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
184807	chr5	111240521	111240780	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	16266	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
229901	chr9	126557651	126558350	+	0	NA	Intergenic	Intergenic	-55928	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
27780	chr10	35415351	35415450	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	78526	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
219954	chr8	89689171	89689350	+	0	NA	Intergenic	Intergenic	68451	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
221049	chr8	116765771	116767080	+	0	NA	promoter-TSS (NM_032334)	promoter-TSS (NM_032334)	-99	NM_032334	84294		NM_032334	ENSG00000147679	UTP23	C8orf53	UTP23 small subunit processome component	protein-coding
64537	chr14	24439301	24439500	+	0	NA	TTS (NM_001290293)	TTS (NM_001290293)	3401	NM_020195	56948		NM_020195	ENSG00000100445	SDR39U1	C14orf124|HCDI	short chain dehydrogenase/reductase family 39U member 1	protein-coding
161143	chr3	38834101	38834330	+	0	NA	Intergenic	Intergenic	-40205	NM_006514	6336		NM_006514	ENSG00000185313	SCN10A	FEPS2|Nav1.8|PN3|SNS	sodium voltage-gated channel alpha subunit 10	protein-coding
22776	chr1	224415501	224415780	+	0	NA	intron (NM_001115113, intron 6 of 13)	AluSc8|SINE|Alu	-17329	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
230797	chr9	129008751	129009000	+	0	NA	intron (NM_001369914, intron 10 of 10)	intron (NM_001369914, intron 10 of 10)	19456	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
100799	chr17	64041901	64042300	+	0	NA	3' UTR (NM_001433, exon 22 of 22)	3' UTR (NM_001433, exon 22 of 22)	-21466	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
74443	chr15	59437721	59438580	+	0	NA	promoter-TSS (NM_152450)	promoter-TSS (NM_152450)	-36	NM_152450	145773		NM_152450	ENSG00000157470	FAM81A	-	family with sequence similarity 81 member A	protein-coding
1648	chr1	3799851	3800150	+	0	NA	Intergenic	LTR38|LTR|ERV1	-3502	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
169178	chr3	156686871	156687430	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	10486	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
154786	chr22	36774001	36774400	+	0	NA	intron (NR_033531, intron 1 of 1)	intron (NR_033531, intron 1 of 1)	1919	NM_006860	11020		NM_006860	ENSG00000100360	IFT27	BBS19|CFAP156|FAP156|RABL4|RAYL	intraflagellar transport 27	protein-coding
98919	chr17	48608021	48608550	+	0	NA	intron (NM_004502, intron 1 of 1)	AluYm1|SINE|Alu	2732	NM_004502	3217		NM_004502	ENSG00000260027	HOXB7	HHO.C1|HOX2|HOX2C|Hox-2.3	homeobox B7	protein-coding
58566	chr12	132422001	132422600	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-67851	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
131738	chr2	98444221	98447000	+	0	NA	promoter-TSS (NM_001351426)	promoter-TSS (NM_001351426)	-400	NM_001351427	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
15804	chr1	151288151	151288250	+	0	NA	exon (NM_001304764, exon 2 of 9)	exon (NM_001304764, exon 2 of 9)	5901	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
99477	chr17	50168151	50168400	+	0	NA	intron (NM_001135697, intron 4 of 7)	intron (NM_001135697, intron 4 of 7)	2270	NM_001135697	6442		NM_000023	ENSG00000108823	SGCA	50DAG|ADL|DAG2|DMDA2|LGMD2D|LGMDR3|SCARMD1|adhalin	sarcoglycan alpha	protein-coding
83451	chr16	27326671	27327430	+	0	NA	intron (NM_001257997, intron 1 of 9)	tRNA-Ile-ATA|tRNA|tRNA	13076	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
171576	chr3	197000051	197000550	+	0	NA	Intergenic	Intergenic	-2606	NR_038285	100507057		NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1|PLANE	MELTF antisense RNA 1	ncRNA
218395	chr8	47203151	47203250	+	0	NA	Intergenic	Intergenic	13893	NR_037168	100287846		NR_037168		LOC100287846	-	uncharacterized LOC100287846	ncRNA
45027	chr11	117025001	117025800	+	0	NA	intron (NM_001281748, intron 1 of 24)	MIRc|SINE|MIR	73028	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
156484	chr22	41275801	41276000	+	0	NA	intron (NM_001278651, intron 3 of 16)	AluJb|SINE|Alu	10287	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
219604	chr8	80034001	80034200	+	0	NA	TTS (NM_001025253)	TTS (NM_001025253)	-3841	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
229651	chr9	124267001	124267400	+	0	NA	intron (NM_001166168, intron 1 of 9)	intron (NM_001166168, intron 1 of 9)	-6032	NR_149024	613206		NM_001033016	ENSG00000235204	LOC613206	-	uncharacterized LOC613206	ncRNA
106280	chr18	12679371	12679530	+	0	NA	intron (NR_073537, intron 9 of 12)	MER61A|LTR|ERV1	20711	NM_147163	56984		NM_020232	ENSG00000128789	PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|PRAAS4|TNFSF5IP1	proteasome assembly chaperone 2	protein-coding
110975	chr19	2961851	2962750	+	0	NA	Intergenic	Intergenic	-15264	NM_001143986	79816		NM_024760	ENSG00000104953	TLE6	GRG6|OZEMA15|PREMBL	TLE family member 6, subcortical maternal complex member	protein-coding
221192	chr8	120737451	120737750	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-23653	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
1707	chr1	5385501	5385900	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	477041	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
139060	chr2	218846971	218847130	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-12755	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
81393	chr16	5099851	5099950	+	0	NA	Intergenic	Intergenic	-2080	NM_001289029	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
93797	chr17	20468371	20468530	+	0	NA	promoter-TSS (NM_001367292)	promoter-TSS (NM_001367292)	-915	NM_001042685	284194		NM_001042685	ENSG00000170298	LGALS9B	-	galectin 9B	protein-coding
170673	chr3	187736201	187736730	+	0	NA	promoter-TSS (NM_001130845)	promoter-TSS (NM_001130845)	36	NM_001130845	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
180309	chr5	5493151	5493250	+	0	NA	Intergenic	Intergenic	70523	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
164874	chr3	71077621	71078080	+	0	NA	intron (NM_001244810, intron 7 of 20)	AluSp|SINE|Alu	-12926	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
4915	chr1	23869551	23869850	+	0	NA	TTS (NM_001841)	TTS (NM_001841)	-1410	NM_000147	2517		NM_000147	ENSG00000179163	FUCA1	FUCA	alpha-L-fucosidase 1	protein-coding
80208	chr16	2158771	2158930	+	0	NA	intron (NM_032271, intron 1 of 20)	intron (NM_032271, intron 1 of 20)	3068	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
223068	chr8	143394521	143394980	+	0	NA	Intergenic	Intergenic	-22929	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
232466	chr9	136198601	136199600	+	0	NA	intron (NM_178138, intron 3 of 5)	CpG-29079	2574	NM_001363746	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
208638	chr7	72996771	72996930	+	0	NA	TTS (NR_040582)	TTS (NR_040582)	9093	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
201435	chr6	147213301	147213500	+	0	NA	intron (NM_139244, intron 2 of 25)	AluJb|SINE|Alu	-8786	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
46753	chr11	129373171	129373650	+	0	NA	Intergenic	CpG	-2438	NM_003658	8538		NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
159469	chr3	14136401	14136600	+	0	NA	intron (NM_024334, intron 10 of 11)	intron (NM_024334, intron 10 of 11)	11448	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
149799	chr21	34968801	34969730	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	70161	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
21415	chr1	205299071	205299630	+	0	NA	Intergenic	AluYh3|SINE|Alu	22395	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
121942	chr19	48463251	48464030	+	0	NA	intron (NM_013348, intron 2 of 2)	intron (NM_013348, intron 2 of 2)	-5568	NM_017457	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
92772	chr17	15627351	15627500	+	0	NA	TTS (NM_006470)	TTS (NM_006470)	-7721	NM_001282540	374286		NM_006382	ENSG00000241322	FBXW10B	C170RF1|C17ORF1|C17ORF1A|CDRT1|FBXW10P1|HREP|SM25H2	F-box and WD repeat domain containing 10B	protein-coding
170774	chr3	188584001	188584400	+	0	NA	intron (NR_164692, intron 5 of 9)	intron (NR_164692, intron 5 of 9)	-15534	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
128243	chr2	54522421	54523180	+	0	NA	intron (NM_003128, intron 1 of 35)	intron (NM_003128, intron 1 of 35)	-6422	NR_002229	56969		NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
43532	chr11	82757871	82758030	+	0	NA	Intergenic	Intergenic	-24086	NM_175885	220382		NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
157667	chr22	46269471	46269830	+	0	NA	intron (NM_017931, intron 2 of 13)	intron (NM_017931, intron 2 of 13)	1642	NM_017931	55020		NM_017931	ENSG00000075234	TTC38	LL22NC03-5H6.5	tetratricopeptide repeat domain 38	protein-coding
106334	chr18	12989151	12989450	+	0	NA	Intergenic	Intergenic	-2062	NM_032142	55125		NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
105866	chr18	3129101	3129610	+	0	NA	exon (NM_003803, exon 18 of 38)	exon (NM_003803, exon 18 of 38)	90613	NM_019856	8736		NM_003803	ENSG00000101605	MYOM1	SKELEMIN	myomesin 1	protein-coding
19428	chr1	174217571	174218050	+	0	NA	intron (NM_001366447, intron 1 of 20)	intron (NM_001366447, intron 1 of 20)	-57290	NM_001366449	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
56674	chr12	120001801	120002230	+	0	NA	intron (NR_147894, intron 3 of 8)	AluJr|SINE|Alu	12171	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
106001	chr18	7942671	7943030	+	0	NA	intron (NM_002845, intron 5 of 30)	intron (NM_002845, intron 5 of 30)	-4025	NM_001378146	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
216500	chr8	20248271	20248630	+	0	NA	3' UTR (NM_001362884, exon 4 of 4)	3' UTR (NM_001362884, exon 4 of 4)	25085	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
219703	chr8	80915501	80915850	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	-40894	NM_001033723	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
76185	chr15	73273251	73273600	+	0	NA	intron (NM_001172623, intron 19 of 27)	intron (NM_001172623, intron 19 of 27)	-26485	NR_162148	113219462		NR_162148		MIR12135	-	microRNA 12135	ncRNA
128327	chr2	54670971	54671330	+	0	NA	3' UTR (NM_003128, exon 36 of 36)	3' UTR (NM_003128, exon 36 of 36)	-53862	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133527	chr2	120225451	120226000	+	0	NA	Intergenic	Intergenic	-2325	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
56715	chr12	120101101	120102130	+	0	NA	intron (NM_006861, intron 3 of 5)	intron (NM_006861, intron 3 of 5)	15138	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
203529	chr7	818251	818930	+	0	NA	intron (NM_001171945, intron 2 of 6)	L1MB5|LINE|L1	1947	NR_160282	23353		NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
92252	chr17	7951421	7951750	+	0	NA	Intergenic	Intergenic	19379	NM_001353206	116840		NM_053051	ENSG00000170037	CNTROB	LIP8|PP1221	centrobin, centriole duplication and spindle assembly protein	protein-coding
47476	chr12	3905871	3906300	+	0	NA	Intergenic	L1MEi|LINE|L1	-32637	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
145921	chr20	46008951	46009750	+	0	NA	intron (NM_004994, intron 1 of 12)	intron (NM_004994, intron 1 of 12)	442	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
19646	chr1	180231651	180232530	+	0	NA	intron (NM_033343, intron 1 of 5)	CpG-2007	1826	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
46273	chr11	124838751	124838850	+	0	NA	Intergenic	Intergenic	-26632	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
32351	chr10	102351851	102352420	+	0	NA	intron (NR_165087, intron 6 of 38)	intron (NR_165087, intron 6 of 38)	-41975	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
33831	chr10	123995621	123996100	+	0	NA	Intergenic	Intergenic	96546	NM_014863	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
235422	chrX	45770051	45770750	+	0	NA	Intergenic	Intergenic	-23276	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
169062	chr3	153286021	153286630	+	0	NA	Intergenic	Intergenic	124099	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
78620	chr15	94230991	94232500	+	0	NA	non-coding (NR_169532, exon 1 of 24)	non-coding (NR_169532, exon 1 of 24)	184	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
54616	chr12	92588951	92589250	+	0	NA	Intergenic	Intergenic	-113743	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
53866	chr12	70242551	70244630	+	0	NA	promoter-TSS (NM_001199303)	promoter-TSS (NM_001199303)	-124	NR_037615	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
112946	chr19	7729951	7731230	+	0	NA	intron (NM_198492, intron 5 of 8)	CpG-13566	1581	NM_198492	339390		NM_198492	ENSG00000182566	CLEC4G	DTTR431|LP2698|LSECtin|UNQ431	C-type lectin domain family 4 member G	protein-coding
71559	chr14	106348271	106348430	+	0	NA	Intergenic	AluYi6|SINE|Alu	60676	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
75551	chr15	66862671	66863130	+	0	NA	Intergenic	MIR3|SINE|MIR	93615	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
166528	chr3	114500101	114500830	+	0	NA	intron (NR_121662, intron 3 of 6)	intron (NR_121662, intron 3 of 6)	46872	NR_121661	101929754		NR_121661	ENSG00000242290	ZBTB20-AS5	-	ZBTB20 antisense RNA 5	ncRNA
49594	chr12	27185421	27185750	+	0	NA	Intergenic	Intergenic	-58701	NM_015000	23012		NM_015000	ENSG00000211455	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
42480	chr11	69913021	69913280	+	0	NA	Intergenic	Intergenic	-72757	NM_001378092	55107		NM_018043	ENSG00000131620	ANO1	DOG1|INDMS|MYMY7|ORAOV2|TAOS2|TMEM16A	anoctamin 1	protein-coding
206163	chr7	28020351	28020800	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-159882	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
73003	chr15	40693471	40693630	+	0	NA	TTS (NR_040058)	TTS (NR_040058)	1555	NR_040058	100505648		NR_040058	ENSG00000245849	RAD51-AS1	TODRA	RAD51 antisense RNA 1	ncRNA
17723	chr1	158934721	158935130	+	0	NA	intron (NM_152501, intron 1 of 8)	AluSq2|SINE|Alu	3373	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
33138	chr10	112378021	112378880	+	0	NA	intron (NM_016234, intron 1 of 20)	AluSz|SINE|Alu	2252	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
63207	chr13	113819921	113820180	+	0	NA	TTS (NM_000820)	TTS (NM_000820)	4440	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
230542	chr9	128396251	128396550	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluY|SINE|Alu	-3686	NR_029837	407003		NR_029837	ENSG00000284185	MIR219A2	MIR219-2|MIRN219-2|hsa-mir-219a-2|mir-219a-2	microRNA 219a-2	ncRNA
46086	chr11	122836721	122837180	+	0	NA	Intergenic	AluJb|SINE|Alu	-1550	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
21632	chr1	206593421	206593680	+	0	NA	intron (NM_001201478, intron 12 of 12)	intron (NM_001201478, intron 12 of 12)	18915	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
9058	chr1	44822051	44822900	+	0	NA	exon (NM_003738, exon 22 of 22)	exon (NM_003738, exon 22 of 22)	13993	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
128821	chr2	63047421	63048000	+	0	NA	promoter-TSS (NR_027069)	promoter-TSS (NR_027069)	1	NR_027069	100132215		NR_027069	ENSG00000231609	EHBP1-AS1	-	EHBP1 antisense RNA 1	ncRNA
102822	chr17	76458451	76459100	+	0	NA	intron (NM_001166579, intron 1 of 6)	intron (NM_001166579, intron 1 of 6)	5424	NM_001166579	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
165353	chr3	88410201	88410600	+	0	NA	intron (NM_001368168, intron 2 of 2)	intron (NM_001368168, intron 2 of 2)	71944	NM_001368168	111064647		NM_001368165	ENSG00000283434	CSNKA2IP	-	casein kinase 2 subunit alpha' interacting protein	protein-coding
141664	chr2	241773271	241774400	+	0	NA	Intergenic	Intergenic	-2987	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
89562	chr16	89250371	89250900	+	0	NA	Intergenic	L1MB4|LINE|L1	32932	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
215139	chr7	155454171	155454330	+	0	NA	Intergenic	CpG	-3879	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
67229	chr14	68956671	68957030	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	22452	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
92434	chr17	8442601	8443030	+	0	NA	intron (NM_001025579, intron 1 of 9)	AluY|SINE|Alu	6931	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
155920	chr22	39599271	39599430	+	0	NA	intron (NM_001003406, intron 2 of 35)	AluYa5|SINE|Alu	28597	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
5892	chr1	26799771	26801130	+	0	NA	non-coding (NR_164652, exon 4 of 4)	non-coding (NR_164652, exon 4 of 4)	12262	NM_001374482	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
44202	chr11	96288021	96288280	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-53288	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
154264	chr22	31625851	31626200	+	0	NA	intron (NM_001326417, intron 3 of 9)	intron (NM_001326417, intron 3 of 9)	-4494	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
83110	chr16	22476451	22476950	+	0	NA	intron (NR_027154, intron 13 of 28)	AluSx1|SINE|Alu	-27749	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
104460	chr17	81106351	81107130	+	0	NA	intron (NM_001385145, intron 11 of 13)	intron (NM_001385145, intron 11 of 13)	9129	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
10825	chr1	77939851	77940450	+	0	NA	intron (NM_144573, intron 11 of 12)	intron (NM_144573, intron 11 of 12)	38922	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
22256	chr1	212629701	212630900	+	0	NA	Intergenic	Intergenic	5826	NM_153606	149647		NM_153606	ENSG00000162771	GARIN4	FAM71A|GARI-L4|GARIL4	golgi associated RAB2 interactor family member 4	protein-coding
171988	chr4	947951	948480	+	0	NA	5' UTR (NM_001297427, exon 3 of 11)	5' UTR (NM_001297427, exon 3 of 11)	15755	NM_032326	84286		NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
17188	chr1	156239471	156239900	+	0	NA	3' UTR (NM_007221, exon 5 of 5)	3' UTR (NM_007221, exon 5 of 5)	-2499	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
184034	chr5	91369351	91369450	+	0	NA	non-coding (NR_138072, exon 8 of 8)	non-coding (NR_138072, exon 8 of 8)	10697	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
157305	chr22	44490501	44490700	+	0	NA	Intergenic	Intergenic	7633	NM_032287	84247		NM_032287	ENSG00000188636	RTL6	LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2	retrotransposon Gag like 6	protein-coding
115408	chr19	15290601	15290800	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-10249	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
184301	chr5	96874371	96874730	+	0	NA	Intergenic	Intergenic	-1389	NM_001329229	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
173596	chr4	10549751	10549930	+	0	NA	intron (NM_052964, intron 8 of 18)	intron (NM_052964, intron 8 of 18)	-92414	NM_001375817	85460		NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
142611	chr20	5596121	5596380	+	0	NA	intron (NM_019593, intron 3 of 19)	AluJr4|SINE|Alu	14756	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
223172	chr8	143547021	143548600	+	0	NA	Intergenic	AluY|SINE|Alu	-5577	NM_001166237	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
118483	chr19	35908101	35908650	+	0	NA	promoter-TSS (NM_198125)	promoter-TSS (NM_198125)	-80	NM_003332	7305		NM_003332	ENSG00000011600	TYROBP	DAP12|KARAP|PLOSL|PLOSL1	transmembrane immune signaling adaptor TYROBP	protein-coding
192041	chr6	16483171	16484480	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	245238	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
48832	chr12	12349621	12350850	+	0	NA	promoter-TSS (NM_018050)	promoter-TSS (NM_018050)	7	NM_001363613	54682		NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
89291	chr16	88699301	88699500	+	0	NA	intron (NM_178841, intron 3 of 5)	intron (NM_178841, intron 3 of 5)	4181	NM_001171816	115992		NM_178841	ENSG00000158717	RNF166	-	ring finger protein 166	protein-coding
91636	chr17	5423301	5423700	+	0	NA	intron (NM_001160246, intron 3 of 3)	AluJr4|SINE|Alu	-3761	NM_001320653	4927		NM_002532	ENSG00000108559	NUP88	FADS4	nucleoporin 88	protein-coding
17881	chr1	160069901	160070800	+	0	NA	promoter-TSS (NM_002241)	promoter-TSS (NM_002241)	-190	NM_002241	3766		NM_002241	ENSG00000177807	KCNJ10	BIRK-10|KCNJ13-PEN|KIR1.2|KIR4.1|SESAME	potassium inwardly rectifying channel subfamily J member 10	protein-coding
174058	chr4	26892321	26893080	+	0	NA	intron (NM_020860, intron 1 of 11)	ERVL-B4-int|LTR|ERVL	31859	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
212196	chr7	117124671	117124900	+	0	NA	intron (NM_001369606, intron 4 of 16)	MIR|SINE|MIR	20807	NR_002331	93654		NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
178918	chr4	158777871	158778750	+	0	NA	intron (NM_020840, intron 1 of 16)	Tigger7|DNA|TcMar-Tigger	9284	NM_001346043	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
152610	chr22	21412501	21413030	+	0	NA	Intergenic	AluSz|SINE|Alu	-4606	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
112690	chr19	7060751	7060850	+	0	NA	Intergenic	AluSz|SINE|Alu	-2166	NM_001164425	653657		NM_001164425	ENSG00000182315	MBD3L3	-	methyl-CpG binding domain protein 3 like 3	protein-coding
141763	chr2	242006751	242007500	+	0	NA	intron (NR_110220, intron 3 of 3)	CpG	5916	NR_149023	285097		NM_178530	ENSG00000280119	LOC285097	-	uncharacterized FLJ38379	ncRNA
146296	chr20	49153321	49153650	+	0	NA	intron (NM_017453, intron 4 of 13)	AluSx1|SINE|Alu	34849	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
111413	chr19	3774371	3774730	+	0	NA	Intergenic	Intergenic	-2322	NM_032753	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
151493	chr21	46322401	46322880	+	0	NA	exon (NM_058180, exon 1 of 8)	exon (NM_058180, exon 1 of 8)	1217	NM_001286477	54058		NM_058180	ENSG00000160298	C21orf58	-	chromosome 21 open reading frame 58	protein-coding
209117	chr7	74967151	74967700	+	0	NA	intron (NM_001145064, intron 1 of 8)	intron (NM_001145064, intron 1 of 8)	2720	NM_001145064	729438		NM_001145064	ENSG00000274070	CASTOR2	GATSL1|GATSL2	cytosolic arginine sensor for mTORC1 subunit 2	protein-coding
139119	chr2	218985421	218985850	+	0	NA	promoter-TSS (NM_017521)	promoter-TSS (NM_017521)	-451	NM_017521	54738		NM_017521	ENSG00000163497	FEV	HSRNAFEV|PET-1	FEV transcription factor, ETS family member	protein-coding
104791	chr17	81723551	81724050	+	0	NA	Intergenic	L1M4|LINE|L1	11516	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
238290	chrX	149483451	149483880	+	0	NA	intron (NM_001166550, intron 8 of 8)	L1MB3|LINE|L1	21641	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
175202	chr4	56649671	56650650	+	0	NA	intron (NM_139211, intron 2 of 2)	MIR3|SINE|MIR	6362	NM_139211	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
163372	chr3	50480271	50481350	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	22824	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
31268	chr10	92238651	92238950	+	0	NA	intron (NM_014912, intron 2 of 9)	intron (NM_014912, intron 2 of 9)	4479	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
77193	chr15	80753401	80753600	+	0	NA	intron (NM_021214, intron 2 of 2)	L1MD3|LINE|L1	-25870	NM_001293304	57214		NM_018689	ENSG00000103888	CEMIP	CCSP1|CEMIP1|HYBID|KIAA1199|TMEM2L	cell migration inducing hyaluronidase 1	protein-coding
107595	chr18	48896821	48897230	+	0	NA	Intergenic	Intergenic	45782	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
176712	chr4	101205721	101206250	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	34887	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
173568	chr4	10105971	10108280	+	0	NA	intron (NM_017491, intron 2 of 14)	intron (NM_017491, intron 2 of 14)	9674	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
96499	chr17	40310971	40311130	+	0	NA	intron (NM_000964, intron 1 of 8)	intron (NM_000964, intron 1 of 8)	1870	NM_000964	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
184978	chr5	113516421	113516880	+	0	NA	intron (NM_001345976, intron 2 of 27)	MER20|DNA|hAT-Charlie	2956	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
80186	chr16	2129721	2129980	+	0	NA	intron (NM_001009944, intron 1 of 45)	L1M4|LINE|L1	-3269	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
18487	chr1	161631801	161632150	+	0	NA	promoter-TSS (NM_001271036)	promoter-TSS (NM_001271036)	-12	NM_000570	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
7308	chr1	32500201	32500900	+	0	NA	Intergenic	CpG	35478	NM_001145720	728116		NM_001145720	ENSG00000273274	ZBTB8B	ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
90503	chr17	1455421	1457400	+	0	NA	promoter-TSS (NM_005206)	promoter-TSS (NM_005206)	-178	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
212168	chr7	116873351	116873450	+	0	NA	intron (NM_006136, intron 1 of 9)	intron (NM_006136, intron 1 of 9)	10813	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
24647	chr1	246909371	246909730	+	0	NA	intron (NR_136586, intron 4 of 36)	Tigger7|DNA|TcMar-Tigger	21808	NM_015446	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
14734	chr1	145986501	145987480	+	0	NA	Intergenic	Intergenic	8754	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
55986	chr12	110283251	110283780	+	0	NA	intron (NM_170665, intron 3 of 19)	intron (NM_170665, intron 3 of 19)	2268	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
223404	chr8	143926951	143927050	+	0	NA	exon (NM_000445, exon 30 of 33)	exon (NM_000445, exon 30 of 33)	12597	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
196937	chr6	52534871	52535350	+	0	NA	intron (NM_012288, intron 2 of 10)	intron (NM_012288, intron 2 of 10)	41950	NM_012288	9697		NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
188106	chr5	150373621	150374280	+	0	NA	intron (NM_001371623, intron 7 of 26)	intron (NM_001371623, intron 7 of 26)	16253	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
213451	chr7	138751001	138751300	+	0	NA	intron (NM_130840, intron 10 of 20)	LTR53B|LTR|ERVL	22887	NM_130841	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
146268	chr20	49037701	49038580	+	0	NA	Intergenic	AluSc5|SINE|Alu	7916	NR_110625	102723483		NR_110624	ENSG00000227431	CSE1L-DT	CSE1L-AS1	CSE1L divergent transcript	ncRNA
8125	chr1	39238401	39238900	+	0	NA	intron (NM_012090, intron 2 of 92)	intron (NM_012090, intron 2 of 92)	154483	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
2916	chr1	11697601	11698080	+	0	NA	intron (NM_198545, intron 1 of 6)	intron (NM_198545, intron 1 of 6)	6130	NM_198545	374946		NM_198545	ENSG00000162490	DRAXIN	AGPA3119|C1orf187|UNQ3119|neucrin	dorsal inhibitory axon guidance protein	protein-coding
131390	chr2	96259721	96259980	+	0	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	6147	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
87557	chr16	71956651	71956750	+	0	NA	intron (NM_181536, intron 16 of 29)	L1MB2|LINE|L1	43278	NM_181536	342372		NM_181536	ENSG00000277481	PKD1L3	-	polycystin 1 like 3, transient receptor potential channel interacting	protein-coding
26763	chr10	22723171	22723330	+	0	NA	Intergenic	Intergenic	-8672	NM_005028	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
182667	chr5	67224251	67224550	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-27601	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
34586	chr10	133248051	133248450	+	0	NA	promoter-TSS (NR_108078)	promoter-TSS (NR_108078)	-365	NR_108079	101927671		NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
73669	chr15	44730601	44731200	+	0	NA	intron (NR_125376, intron 1 of 1)	AluSz6|SINE|Alu	1912	NR_125376	100419583		NR_125376		LOC100419583	-	ring finger protein 4 pseudogene	pseudo
74819	chr15	63479351	63480350	+	0	NA	Intergenic	LTR101_Mam|LTR|ERVL	-24661	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
171549	chr3	196837821	196838200	+	0	NA	Intergenic	Intergenic	-29846	NM_001308045	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
130088	chr2	74504551	74504650	+	0	NA	TTS (NM_032673)	TTS (NM_032673)	-1284	NM_001009812	85474		NM_001009812	ENSG00000179528	LBX2	LP3727	ladybird homeobox 2	protein-coding
113275	chr19	8523971	8524530	+	0	NA	intron (NM_012335, intron 25 of 27)	AluSg|SINE|Alu	-10083	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
137894	chr2	200856271	200856650	+	0	NA	intron (NR_027856, intron 7 of 10)	MIR3|SINE|MIR	8101	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
45397	chr11	118334471	118335350	+	0	NA	Intergenic	L1MEc|LINE|L1	7795	NM_000732	915		NM_000732	ENSG00000167286	CD3D	CD3-DELTA|CD3DELTA|IMD19|T3D	CD3 delta subunit of T-cell receptor complex	protein-coding
51463	chr12	52058051	52058150	+	0	NA	intron (NM_173157, intron 6 of 6)	AluJr4|SINE|Alu	6658	NM_173157	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
221076	chr8	116887521	116888050	+	0	NA	Intergenic	LTR41C|LTR|ERVL	-12985	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
165059	chr3	71451071	71451430	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	90839	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
32896	chr10	110163751	110164130	+	0	NA	Intergenic	Intergenic	-11960	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
20135	chr1	192554601	192555030	+	0	NA	Intergenic	Intergenic	-20958	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
81023	chr16	4257351	4257450	+	0	NA	3' UTR (NM_003223, exon 7 of 7)	3' UTR (NM_003223, exon 7 of 7)	-3611	NR_039999	100507501		NR_039999		LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA
225153	chr9	33786001	33786200	+	0	NA	intron (NM_001197098, intron 1 of 4)	intron (NM_001197098, intron 1 of 4)	-9461	NM_002771	5646		NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	serine protease 3	protein-coding
78571	chr15	93024571	93025030	+	0	NA	3' UTR (NM_001271, exon 39 of 39)	3' UTR (NM_001271, exon 39 of 39)	48356	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
236803	chrX	79156521	79157000	+	0	NA	intron (NM_032553, intron 1 of 2)	intron (NM_032553, intron 1 of 2)	12072	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
227825	chr9	93448651	93448950	+	0	NA	intron (NR_136230, intron 2 of 3)	AluY|SINE|Alu	2808	NM_001322224	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
189406	chr5	172768301	172769690	+	0	NA	exon (NM_004417, exon 4 of 4)	exon (NM_004417, exon 4 of 4)	2200	NM_004417	1843		NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
190158	chr5	178123271	178124250	+	0	NA	3' UTR (NM_015111, exon 5 of 5)	3' UTR (NM_015111, exon 5 of 5)	-7201	NM_001288795	64777		NM_022762	ENSG00000145916	RMND5B	GID2|GID2B	required for meiotic nuclear division 5 homolog B	protein-coding
126420	chr2	27720101	27720380	+	0	NA	intron (NR_160725, intron 2 of 2)	intron (NR_160725, intron 2 of 2)	4117	NR_160725	105374378		NR_160725		LOC105374378	-	uncharacterized LOC105374378	ncRNA
102926	chr17	76582551	76582850	+	0	NA	intron (NM_006456, intron 1 of 8)	intron (NM_006456, intron 1 of 8)	3160	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
23967	chr1	235160701	235162300	+	0	NA	promoter-TSS (NR_027762)	promoter-TSS (NR_027762)	-250	NR_144491	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
188067	chr5	150058671	150059030	+	0	NA	intron (NR_164679, intron 13 of 19)	MIR3|SINE|MIR	27704	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
52349	chr12	55101651	55101850	+	0	NA	Intergenic	L1HS|LINE|L1	-28019	NM_001005243	441639		NM_001005243	ENSG00000170605	OR9K2	OR12-2	olfactory receptor family 9 subfamily K member 2	protein-coding
159927	chr3	17021351	17021950	+	0	NA	intron (NM_015184, intron 3 of 5)	intron (NM_015184, intron 3 of 5)	88454	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
176559	chr4	98601821	98602850	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	56276	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
158237	chr22	50291821	50292080	+	0	NA	intron (NM_001376869, intron 1 of 35)	intron (NM_001376869, intron 1 of 35)	8385	NM_001376883	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
97985	chr17	45267701	45268100	+	0	NA	intron (NM_003954, intron 11 of 15)	intron (NM_003954, intron 11 of 15)	-5806	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
235786	chrX	49155051	49155450	+	0	NA	Intergenic	Intergenic	-7593	NM_001099682	79917		NM_024859	ENSG00000269313	MAGIX	JM10|PDZX	MAGI family member, X-linked	protein-coding
144739	chr20	36586621	36587100	+	0	NA	intron (NM_001199535, intron 2 of 4)	intron (NM_001199535, intron 2 of 4)	12306	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
149508	chr21	32653321	32653580	+	0	NA	intron (NM_203446, intron 21 of 32)	intron (NM_203446, intron 21 of 32)	-40579	NM_001350335	56683		NM_017835	ENSG00000159079	CFAP298	C21orf48|C21orf59|CILD26|DNAAF16|FBB18|Kur	cilia and flagella associated protein 298	protein-coding
70049	chr14	100120551	100120650	+	0	NA	intron (NM_016337, intron 3 of 13)	L2c|LINE|L2	10945	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
117436	chr19	19650521	19650980	+	0	NA	intron (NM_020410, intron 17 of 25)	intron (NM_020410, intron 17 of 25)	-7093	NM_001288999	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
58581	chr12	132447821	132448630	+	0	NA	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-41926	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
10747	chr1	76289751	76289850	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	215054	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
20634	chr1	199226121	199226490	+	0	NA	intron (NR_147896, intron 3 of 3)	intron (NR_147896, intron 3 of 3)	77707	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
142367	chr20	3784251	3785300	+	0	NA	exon (NM_001810, exon 1 of 1)	exon (NM_001810, exon 1 of 1)	1965	NM_001810	1059		NM_001810	ENSG00000125817	CENPB	-	centromere protein B	protein-coding
112842	chr19	7537021	7537430	+	0	NA	intron (NM_006702, intron 6 of 34)	intron (NM_006702, intron 6 of 34)	1508	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
106015	chr18	7982601	7982800	+	0	NA	intron (NM_001378146, intron 3 of 29)	Tigger3b|DNA|TcMar-Tigger	35825	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
90921	chr17	2599471	2599630	+	0	NA	intron (NM_000430, intron 1 of 10)	intron (NM_000430, intron 1 of 10)	5896	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
86607	chr16	67327771	67328450	+	0	NA	intron (NM_018296, intron 1 of 13)	L2|LINE|L2	1295	NM_018296	55282		NM_018296	ENSG00000159708	LRRC36	RORBP70|XLHSRF2	leucine rich repeat containing 36	protein-coding
87932	chr16	79316021	79316450	+	0	NA	Intergenic	Intergenic	284502	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
207268	chr7	43968271	43969000	+	0	NA	intron (NR_003655, intron 10 of 15)	intron (NR_003655, intron 10 of 15)	-29233	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
210288	chr7	99428121	99428500	+	0	NA	intron (NM_015545, intron 5 of 7)	AluY|SINE|Alu	10488	NM_015545	26024		NM_015545	ENSG00000106246	PTCD1	-	pentatricopeptide repeat domain 1	protein-coding
143259	chr20	25080921	25081880	+	0	NA	promoter-TSS (NR_165181)	promoter-TSS (NR_165181)	-69	NR_165181	30813		NM_014588	ENSG00000100987	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
233075	chr9	137094571	137094730	+	0	NA	intron (NM_016219, intron 3 of 12)	AluSq|SINE|Alu	7665	NR_045721	11253		NM_016219	ENSG00000177239	MAN1B1	ERMAN1|ERManI|MANA-ER|MRT15	mannosidase alpha class 1B member 1	protein-coding
31808	chr10	98467271	98468180	+	0	NA	intron (NM_001166246, intron 11 of 12)	CpG	-20762	NM_001322477	3257		NM_000195	ENSG00000107521	HPS1	BLOC3S1|HPS	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding
229915	chr9	126616921	126617230	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	3147	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
65987	chr14	57389721	57391800	+	0	NA	intron (NM_001011713, intron 1 of 4)	CpG	174	NM_001011713	122830		NM_001011713	ENSG00000139977	NAA30	C14orf35|MAK3|Mak3p|NAT12|NAT12P	N-alpha-acetyltransferase 30, NatC catalytic subunit	protein-coding
205110	chr7	6848551	6848850	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-22425	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
136306	chr2	174835851	174836150	+	0	NA	intron (NM_001025201, intron 7 of 12)	L1MEc|LINE|L1	11555	NM_001206602	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
157817	chr22	47090501	47091560	+	0	NA	intron (NM_001284305, intron 11 of 12)	intron (NM_001284305, intron 11 of 12)	-174988	NR_122047	642757		NR_122047	ENSG00000280080	TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
18764	chr1	167503721	167504180	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	14579	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
117897	chr19	32719521	32720080	+	0	NA	promoter-TSS (NM_001110822)	promoter-TSS (NM_001110822)	33	NM_001366102	91646		NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
162270	chr3	47302371	47302530	+	0	NA	intron (NM_025010, intron 1 of 9)	AluSc|SINE|Alu	19506	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
105616	chr18	749751	749850	+	0	NA	intron (NM_005433, intron 3 of 11)	AluY|SINE|Alu	-37136	NR_148711	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
100508	chr17	62059521	62059780	+	0	NA	intron (NM_005121, intron 2 of 29)	intron (NM_005121, intron 2 of 29)	5628	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
74949	chr15	63792871	63793380	+	0	NA	intron (NM_003922, intron 1 of 77)	MER21B|LTR|ERVL	40823	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
31101	chr10	89293451	89293830	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-8406	NM_001547	3433		NM_001547	ENSG00000119922	IFIT2	G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54|ISG-54 K|ISG-54K|ISG54|P54|cig42	interferon induced protein with tetratricopeptide repeats 2	protein-coding
35109	chr11	653021	653480	+	0	NA	intron (NM_001367390, intron 11 of 11)	intron (NM_001367390, intron 11 of 11)	15981	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
75976	chr15	70508851	70508950	+	0	NA	Intergenic	MIRb|SINE|MIR	-2972	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
164029	chr3	53254701	53256780	+	0	NA	intron (NM_001064, intron 1 of 13)	CpG	282	NM_001064	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
6656	chr1	29068671	29068830	+	0	NA	exon (NM_001376028, exon 14 of 15)	exon (NM_001376028, exon 14 of 15)	53751	NM_001171868	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
150366	chr21	42216901	42217880	+	0	NA	intron (NM_207629, intron 1 of 14)	intron (NM_207629, intron 1 of 14)	1313	NM_207629	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
224123	chr9	4668671	4668830	+	0	NA	Intergenic	Intergenic	-2270	NR_148444	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
98413	chr17	46599821	46600150	+	0	NA	intron (NR_040116, intron 1 of 19).2	AluJr|SINE|Alu	9251	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
5307	chr1	25219071	25220430	+	0	NA	Intergenic	L1MEc|LINE|L1	12752	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
94021	chr17	26940201	26940700	+	0	NA	Intergenic	AluYj4|SINE|Alu	148791	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
7731	chr1	36125971	36126130	+	0	NA	promoter-TSS (NM_005202)	promoter-TSS (NM_005202)	-828	NM_001294347	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
162543	chr3	48634951	48636530	+	0	NA	promoter-TSS (NM_022911)	promoter-TSS (NM_022911)	-279	NM_001281733	65010		NM_022911	ENSG00000225697	SLC26A6	-	solute carrier family 26 member 6	protein-coding
154600	chr22	36292001	36292680	+	0	NA	intron (NM_002473, intron 30 of 40)	intron (NM_002473, intron 30 of 40)	-5433	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
121879	chr19	48328871	48331000	+	0	NA	intron (NM_001313905, intron 4 of 4)	intron (NM_001313905, intron 4 of 4)	3936	NM_001313905	2014		NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3 (MAM blood group)	protein-coding
20353	chr1	197910951	197911150	+	0	NA	Intergenic	CpG	-1455	NM_001014434	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
105134	chr17	82232741	82234100	+	0	NA	intron (NM_001042423, intron 1 of 4)	intron (NM_001042423, intron 1 of 4)	1188	NM_001042423	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
78956	chr15	101300421	101301330	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-5627	NR_135508	6627		NM_003090	ENSG00000131876	SNRPA1	Lea1|U2A'	small nuclear ribonucleoprotein polypeptide A'	protein-coding
82584	chr16	18789821	18791450	+	0	NA	promoter-TSS (NM_001030009)	promoter-TSS (NM_001030009)	-301	NM_001030009	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
43612	chr11	83179171	83179330	+	0	NA	intron (NM_015885, intron 11 of 15)	HAL1|LINE|L1	8234	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
89490	chr16	89122321	89123480	+	0	NA	intron (NR_147928, intron 8 of 11)	intron (NR_147928, intron 8 of 11)	-13648	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
151080	chr21	44819501	44820630	+	0	NA	Intergenic	Intergenic	-1936	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
44862	chr11	114172171	114173800	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	-84821	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
198641	chr6	107795951	107796650	+	0	NA	intron (NM_198081, intron 1 of 7)	L1ME2|LINE|L1	28013	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
8043	chr1	38557121	38557700	+	0	NA	Intergenic	L2b|LINE|L2	82214	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
83770	chr16	28726571	28727400	+	0	NA	intron (NM_001286478, intron 14 of 20)	intron (NM_001286478, intron 14 of 20)	2733	NR_107058	102465907		NR_107058	ENSG00000278340	MIR6862-2	hsa-mir-6862-2	microRNA 6862-2	ncRNA
234452	chrX	17632971	17633350	+	0	NA	intron (NM_001291867, intron 1 of 8)	intron (NM_001291867, intron 1 of 8)	-2340	NM_001136024	4810		NM_198270	ENSG00000188158	NHS	CTRCT40|CXN|SCML1	NHS actin remodeling regulator	protein-coding
148011	chr20	63069571	63069930	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	-31542	NR_003244	768096		NR_003244		HAR1A	HAR1F|LINC00064|NCRNA00064	highly accelerated region 1A	ncRNA
26051	chr10	12510371	12510530	+	0	NA	intron (NM_001351032, intron 3 of 11)	intron (NM_001351032, intron 3 of 11)	-68303	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
144951	chr20	37093701	37093900	+	0	NA	intron (NM_183404, intron 1 of 20)	AluSq2|SINE|Alu	2197	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
213576	chr7	139357501	139357930	+	0	NA	intron (NM_001244584, intron 2 of 10)	AluSx3|SINE|Alu	-2131	NM_001270643	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
222592	chr8	141000951	141001630	+	0	NA	promoter-TSS (NM_001352715)	promoter-TSS (NM_001352715)	-8	NM_001352697	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
150398	chr21	42306321	42307180	+	0	NA	Intergenic	Intergenic	8659	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
154950	chr22	37243601	37245500	+	0	NA	promoter-TSS (NM_002872)	promoter-TSS (NM_002872)	-281	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
208591	chr7	72938651	72938750	+	0	NA	intron (NM_172020, intron 7 of 13)	intron (NM_172020, intron 7 of 13)	16063	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
84894	chr16	31200301	31201400	+	0	NA	TTS (NM_013258)	TTS (NM_013258)	-1035	NR_102400	100652740		NR_102400	ENSG00000261359	PYCARD-AS1	C16orf98|PYCARDOS	PYCARD antisense RNA 1	ncRNA
110318	chr19	1851731	1852840	+	0	NA	TTS (NM_031918)	TTS (NM_031918)	-3802	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
118090	chr19	34393371	34393530	+	0	NA	intron (NM_001184722, intron 10 of 17)	intron (NM_001184722, intron 10 of 17)	-10948	NM_001353433	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
158010	chr22	49899551	49900000	+	0	NA	TTS (NM_024105)	TTS (NM_024105)	18663	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
147163	chr20	56439421	56440030	+	0	NA	intron (NM_020356, intron 2 of 5)	intron (NM_020356, intron 2 of 5)	27465	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
59025	chr13	20232071	20232650	+	0	NA	promoter-TSS (NM_001370090)	promoter-TSS (NM_001370090)	35	NM_001110221	10804		NM_006783	ENSG00000121742	GJB6	CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2	gap junction protein beta 6	protein-coding
172176	chr4	1232851	1233530	+	0	NA	intron (NM_001377193, intron 3 of 9)	intron (NM_001377193, intron 3 of 9)	15538	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
93549	chr17	19066621	19067200	+	0	NA	Intergenic	AluSz|SINE|Alu	-2774	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
89465	chr16	89068851	89069400	+	0	NA	Intergenic	Intergenic	-24727	NR_147928	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
25887	chr10	11266421	11266680	+	0	NA	intron (NM_001326346, intron 4 of 11)	intron (NM_001326346, intron 4 of 11)	78124	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
164247	chr3	57164051	57164750	+	0	NA	intron (NM_001318864, intron 2 of 13)	CpG	953	NM_017563	54756		NM_017563	ENSG00000144730	IL17RD	HH18|IL-17RD|IL17RLM|SEF	interleukin 17 receptor D	protein-coding
141081	chr2	238287001	238287990	+	0	NA	intron (NM_022817, intron 1 of 22)	intron (NM_022817, intron 1 of 22)	1115	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
239365	chrY	20574951	20577050	+	0	NA	intron (NM_004681, intron 1 of 6)	CpG	224	NM_004681	9086		NM_004681	ENSG00000198692	EIF1AY	eIF-4C	eukaryotic translation initiation factor 1A Y-linked	protein-coding
164323	chr3	57759821	57760080	+	0	NA	intron (NR_165328, intron 2 of 22)	AluSz|SINE|Alu	2694	NM_001304421	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
144601	chr20	35804951	35805250	+	0	NA	intron (NM_016436, intron 2 of 17)	AluSz6|SINE|Alu	33085	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
182311	chr5	58871671	58871900	+	0	NA	Intergenic	Intergenic	128113	NM_001197223	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
181364	chr5	40541601	40541850	+	0	NA	Intergenic	L1PA2|LINE|L1	-138190	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
208417	chr7	66749001	66749200	+	0	NA	intron (NM_001367749, intron 1 of 4)	L4_A_Mam|LINE|RTE-X	-6782	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
138419	chr2	205539671	205540030	+	0	NA	intron (NM_205863, intron 20 of 21)	intron (NM_205863, intron 20 of 21)	-142650	NM_201264	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
144865	chr20	36904451	36905150	+	0	NA	intron (NM_001363733, intron 12 of 15)	intron (NM_001363733, intron 12 of 15)	28662	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
4921	chr1	23902651	23903150	+	0	NA	intron (NM_001841, intron 1 of 1)	CpG	10462	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
227547	chr9	91865151	91865250	+	0	NA	intron (NM_001318204, intron 1 of 7)	intron (NM_001318204, intron 1 of 7)	85028	NM_004560	4920		NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
163695	chr3	52262271	52263030	+	0	NA	intron (NM_025222, intron 3 of 8)	intron (NM_025222, intron 3 of 8)	5711	NR_029660	406890		NR_029660	ENSG00000199150	MIRLET7G	LET7G|MIRNLET7G|hsa-let-7g|let-7g	microRNA let-7g	ncRNA
151201	chr21	45128301	45128950	+	0	NA	intron (NR_073200, intron 2 of 12)	intron (NR_073200, intron 2 of 12)	-23905	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
53206	chr12	62267421	62267980	+	0	NA	intron (NM_001351164, intron 1 of 21)	intron (NM_001351164, intron 1 of 21)	7296	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
119183	chr19	39423501	39424180	+	0	NA	exon (NM_001351693, exon 19 of 20)	exon (NM_001351693, exon 19 of 20)	10061	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
38611	chr11	46330571	46330730	+	0	NA	Intergenic	Intergenic	-2276	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
16909	chr1	155879001	155879200	+	0	NA	intron (NM_152280, intron 2 of 3)	L2c|LINE|L2	19533	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
63867	chr14	21722871	21723030	+	0	NA	Intergenic	Intergenic	-51933	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
201487	chr6	148946471	148947000	+	0	NA	intron (NM_005715, intron 3 of 7)	AluY|SINE|Alu	17949	NR_038408	100128176		NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA
131489	chr2	96523771	96525130	+	0	NA	Intergenic	Intergenic	7856	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
187860	chr5	147804821	147805480	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-22422	NM_001270941	9832		NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
64617	chr14	30893101	30893350	+	0	NA	TTS (NM_001083893)	TTS (NM_001083893)	-3417	NR_038356	100506071		NR_038356	ENSG00000258525	LOC100506071	-	uncharacterized LOC100506071	ncRNA
141200	chr2	239326921	239328000	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	21998	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
196492	chr6	43632901	43633830	+	0	NA	intron (NM_001003690, intron 2 of 3)	AluSp|SINE|Alu	-2475	NM_014628	9587		NM_014628	ENSG00000124688	MAD2L1BP	CMT2|p31comet	MAD2L1 binding protein	protein-coding
42281	chr11	68310821	68311230	+	0	NA	Intergenic	L2a|LINE|L2	-1566	NM_001291902	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
207296	chr7	44012071	44012230	+	0	NA	intron (NR_003655, intron 4 of 15)	intron (NR_003655, intron 4 of 15)	7044	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
175028	chr4	52710671	52711030	+	0	NA	Intergenic	Intergenic	-1544	NR_145130	57291		NR_024031	ENSG00000226950	DANCR	AGU2|ANCR|KIAA0114|SNHG13|lncRNA-ANCR	differentiation antagonizing non-protein coding RNA	ncRNA
43957	chr11	93733371	93733900	+	0	NA	promoter-TSS (NR_003033)	promoter-TSS (NR_003033)	-38	NR_002959	677805		NR_002959	ENSG00000207145	SNORA18	ACA18	small nucleolar RNA, H/ACA box 18	snoRNA
202038	chr6	153004251	153004750	+	0	NA	TTS (NM_012419)	TTS (NM_012419)	-1685	NM_001301872	54516		NM_019041	ENSG00000112031	MTRF1L	HMRF1L|MRF1L|mtRF1a	mitochondrial translation release factor 1 like	protein-coding
167644	chr3	129610321	129610580	+	0	NA	Intergenic	Intergenic	-3774	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
51969	chr12	53937571	53937730	+	0	NA	intron (NR_047507, intron 1 of 2)	intron (NR_047507, intron 1 of 2)	-1181	NM_017410	3229		NM_017410	ENSG00000123364	HOXC13	ECTD9|HOX3|HOX3G	homeobox C13	protein-coding
80868	chr16	3576121	3576680	+	0	NA	intron (NR_075083, intron 1 of 20)	intron (NR_075083, intron 1 of 20)	1003	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
91516	chr17	4956471	4956900	+	0	NA	intron (NM_053013, intron 10 of 11)	intron (NM_053013, intron 10 of 11)	5566	NM_001976	2027		NM_001976	ENSG00000108515	ENO3	GSD13|MSE	enolase 3	protein-coding
55961	chr12	110041501	110041900	+	0	NA	non-coding (NR_148516, exon 2 of 2)	non-coding (NR_148516, exon 2 of 2)	6947	NR_148516								
60544	chr13	41467901	41468480	+	0	NA	intron (NM_014059, intron 3 of 4)	intron (NM_014059, intron 3 of 4)	10640	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
92112	chr17	7585601	7586030	+	0	NA	intron (NR_024603, intron 2 of 6)	intron (NR_024603, intron 2 of 6)	-1723	NR_136402	100996842		NM_001322800	ENSG00000233223	MPDU1-AS1	-	MPDU1 antisense RNA 1	ncRNA
109609	chr19	936671	936830	+	0	NA	intron (NM_005224, intron 3 of 8)	AluSc8|SINE|Alu	10715	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
222747	chr8	141411121	141411750	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-9953	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
170145	chr3	183449451	183449750	+	0	NA	intron (NR_038301, intron 1 of 3)	LTR16A2|LTR|ERVL	1949	NR_038301	100505687		NR_038301	ENSG00000291106	SNHG33	LINC00888|PAINT	small nucleolar RNA host gene 33	ncRNA
126952	chr2	33859901	33860100	+	0	NA	intron (NR_126403, intron 2 of 5)	intron (NR_126403, intron 2 of 5)	-131783	NR_003143	151325		NM_207329	ENSG00000293267	MYADML	-	myeloid associated differentiation marker like (pseudogene)	pseudo
180530	chr5	14581001	14583100	+	0	NA	intron (NM_019018, intron 1 of 7)	CpG	258	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
35936	chr11	2464551	2464900	+	0	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	3271	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
60052	chr13	32911501	32911710	+	0	NA	promoter-TSS (NR_047020)	promoter-TSS (NR_047020)	47	NR_047020	100874167		NR_047020		LINC00423	-	long intergenic non-protein coding RNA 423	ncRNA
168478	chr3	143170921	143172000	+	0	NA	Intergenic	Intergenic	51689	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
161675	chr3	43360221	43360830	+	0	NA	Intergenic	MIRc|SINE|MIR	-8563	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
98849	chr17	48444321	48445400	+	0	NA	promoter-TSS (NR_110804)	promoter-TSS (NR_110804)	27	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
56175	chr12	111424201	111424400	+	0	NA	intron (NM_005475, intron 2 of 7)	MIRb|SINE|MIR	-10562	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
80161	chr16	2107371	2107730	+	0	NA	promoter-TSS (NR_106775)	promoter-TSS (NR_106775)	-797	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
107407	chr18	46155551	46156500	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	-17997	NM_001008239	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
237409	chrX	119613301	119613700	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-7076	NR_163972	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
26826	chr10	24552371	24552550	+	0	NA	Intergenic	Intergenic	70383	NR_160025	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
210794	chr7	100835901	100836480	+	0	NA	intron (NM_001363494, intron 1 of 10)	intron (NM_001363494, intron 1 of 10)	-8667	NM_004444	2050		NM_004444	ENSG00000196411	EPHB4	CMAVM2|HFASD|HTK|LMPHM7|MYK1|TYRO11	EPH receptor B4	protein-coding
8860	chr1	43414551	43414940	+	0	NA	intron (NM_001365999, intron 4 of 71)	intron (NM_001365999, intron 4 of 71)	24846	NM_001365999	23334		NM_015284	ENSG00000198198	SZT2	C1orf84|DEE18|EIEE18|KIAA0467|KICS1|SZT2A|SZT2B	SZT2 subunit of KICSTOR complex	protein-coding
94391	chr17	28954521	28954780	+	0	NA	TTS (NM_001098635)	TTS (NM_001098635)	-3132	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
109959	chr19	1383251	1384880	+	0	NA	intron (NM_001363602, intron 1 of 7)	CpG	158	NM_001363602	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
34292	chr10	131943401	131943700	+	0	NA	intron (NR_033191, intron 6 of 9)	intron (NR_033191, intron 6 of 9)	38463	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
3085	chr1	12192551	12193480	+	0	NA	exon (NM_001066, exon 6 of 10)	exon (NM_001066, exon 6 of 10)	1302	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
76684	chr15	75732701	75733330	+	0	NA	intron (NR_024595, intron 3 of 4)	intron (NR_024595, intron 3 of 4)	7062	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
126602	chr2	28780421	28780880	+	0	NA	intron (NM_206876, intron 4 of 8)	MIRc|SINE|MIR	28820	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
113524	chr19	10118351	10118450	+	0	NA	intron (NM_003755, intron 5 of 10)	AluSz6|SINE|Alu	1499	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
205363	chr7	13849621	13850580	+	0	NA	Intergenic	Intergenic	136414	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
22116	chr1	211695001	211696200	+	0	NA	Intergenic	Intergenic	19838	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
166153	chr3	111591471	111591900	+	0	NA	intron (NR_134917, intron 5 of 14)	intron (NR_134917, intron 5 of 14)	3661	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
137138	chr2	191049751	191050650	+	0	NA	intron (NM_003151, intron 14 of 23)	intron (NM_003151, intron 14 of 23)	28674	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
83250	chr16	23881471	23882130	+	0	NA	intron (NM_212535, intron 2 of 16)	L1MB2|LINE|L1	45817	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
21512	chr1	205771351	205772150	+	0	NA	intron (NM_001135663, intron 1 of 3)	intron (NM_001135663, intron 1 of 3)	3732	NM_001135663	8934		NM_003929	ENSG00000117280	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
226059	chr9	61855701	61857300	+	0	NA	Intergenic	SST1|Satellite|centr	2416	NR_027421	100132948		NM_001024942	ENSG00000231527	FAM27C	FAM27A|FAM27A1|FAM27A3|bA7G23.5	family with sequence similarity 27 member C	ncRNA
185419	chr5	130818071	130818300	+	0	NA	Intergenic	L1PA3|LINE|L1	347071	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
140609	chr2	233415121	233415650	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	-3827	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
216339	chr8	14803651	14803750	+	0	NA	intron (NM_139167, intron 1 of 7)	L1PA3|LINE|L1	49810	NR_029875	494332		NR_029875	ENSG00000199127	MIR383	MIRN383|hsa-mir-383|mir-383	microRNA 383	ncRNA
71080	chr14	104861301	104861500	+	0	NA	Intergenic	Intergenic	-3868	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
167743	chr3	131794801	131795150	+	0	NA	intron (NM_153429, intron 3 of 16)	intron (NM_153429, intron 3 of 16)	190956	NR_049890	100847040		NR_049890	ENSG00000265859	MIR5704	-	microRNA 5704	ncRNA
177229	chr4	108536601	108536800	+	0	NA	Intergenic	Intergenic	-20533	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
68567	chr14	89415321	89416600	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	1273	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
39504	chr11	61041671	61043480	+	0	NA	Intergenic	L1ME3G|LINE|L1	-51388	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
178840	chr4	153651451	153652350	+	0	NA	intron (NR_134873, intron 2 of 2)	MIRb|SINE|MIR	11732	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
64952	chr14	35879871	35880030	+	0	NA	Intergenic	Intergenic	53612	NM_032352	84312		NM_032352	ENSG00000100916	BRMS1L	BRMS1|p40	BRMS1 like transcriptional repressor	protein-coding
96822	chr17	41951901	41952100	+	0	NA	intron (NM_001350319, intron 9 of 10)	AluJo|SINE|Alu	-14795	NM_033133	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
209052	chr7	74676871	74677230	+	0	NA	intron (NM_001163636, intron 1 of 33)	AluSx1|SINE|Alu	19332	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
178375	chr4	146495471	146496280	+	0	NA	intron (NR_133924, intron 4 of 9)	intron (NR_133924, intron 4 of 9)	26065	NM_001317816	84068		NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7|SSASKS	solute carrier family 10 member 7	protein-coding
211596	chr7	105808901	105810300	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	66985	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
219260	chr8	67320751	67321050	+	0	NA	intron (NM_006421, intron 1 of 38)	AluSx1|SINE|Alu	22881	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
34561	chr10	133143901	133144370	+	0	NA	Intergenic	LTR13|LTR|ERVK	-16084	NM_001347864	85442		NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND	kinase non-catalytic C-lobe domain containing 1	protein-coding
182817	chr5	69097471	69097630	+	0	NA	intron (NM_001251969, intron 1 of 2)	AluJo|SINE|Alu	3536	NM_001251969	64924		NM_022902	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 member 5	protein-coding
15264	chr1	149644171	149644330	+	0	NA	intron (NR_111950, intron 1 of 8)	AluSq4|SINE|Alu	37238	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
96993	chr17	42280421	42281000	+	0	NA	Intergenic	Intergenic	-4319	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
158169	chr22	50211901	50212100	+	0	NA	intron (NM_031454, intron 5 of 8)	AluSq|SINE|Alu	10989	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
213988	chr7	142815101	142815380	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-39774	NM_001280794	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
210693	chr7	100572971	100573250	+	0	NA	TTS (NM_002319)	TTS (NM_002319)	790	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
136581	chr2	178109821	178110180	+	0	NA	Intergenic	Intergenic	-1661	NM_001077197	50940		NM_016953	ENSG00000128655	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding
43435	chr11	77692451	77692550	+	0	NA	intron (NM_016578, intron 8 of 15)	AluYa5|SINE|Alu	-54694	NM_001311199	1207		NM_001293	ENSG00000074201	CLNS1A	CLCI|CLNS1B|ICln	chloride nucleotide-sensitive channel 1A	protein-coding
123899	chr19	55336871	55337450	+	0	NA	Intergenic	Intergenic	-2716	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
38040	chr11	35155101	35155980	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	-7410	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
140959	chr2	237898401	237899530	+	0	NA	intron (NM_005855, intron 2 of 2)	intron (NM_005855, intron 2 of 2)	39342	NM_005855	10267		NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding
54536	chr12	92132221	92132750	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	9228	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
21388	chr1	205232971	205233130	+	0	NA	intron (NM_001375651, intron 1 of 4)	intron (NM_001375651, intron 1 of 4)	3335	NM_001375652	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
227792	chr9	93136371	93137200	+	0	NA	Intergenic	Intergenic	-2534	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
220448	chr8	100320971	100321200	+	0	NA	intron (NM_001280539, intron 1 of 10)	Tigger1|DNA|TcMar-Tigger	-11132	NM_183419	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
2029	chr1	7679921	7681430	+	0	NA	intron (NM_001349613, intron 1 of 11)	CpG	587	NM_001349613	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
171451	chr3	196319571	196320030	+	0	NA	intron (NR_046724, intron 1 of 1)	intron (NR_046724, intron 1 of 1)	1468	NR_121665	100874214		NR_046724	ENSG00000235897	TM4SF19-AS1	-	TM4SF19 antisense RNA 1	ncRNA
234920	chrX	37685621	37686180	+	0	NA	5' UTR (NM_021083, exon 1 of 3)	5' UTR (NM_021083, exon 1 of 3)	109	NM_021083	7504		NM_021083	ENSG00000047597	XK	KX|NA|NAC|X1k|XKR1	X-linked Kx blood group antigen, Kell and VPS13A binding protein	protein-coding
623	chr1	1324151	1326480	+	0	NA	promoter-TSS (NM_017871)	promoter-TSS (NM_017871)	513	NM_001029885	80772		NM_001029885	ENSG00000224051	CPTP	GLTPD1	ceramide-1-phosphate transfer protein	protein-coding
160021	chr3	18410271	18410630	+	0	NA	intron (NM_001322873, intron 5 of 10)	MIRc|SINE|MIR	14889	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
24852	chr10	478131	479050	+	0	NA	intron (NM_014974, intron 2 of 36)	intron (NM_014974, intron 2 of 36)	-149974	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
109731	chr19	1089521	1090600	+	0	NA	intron (NM_001316323, intron 4 of 6)	intron (NM_001316323, intron 4 of 6)	5315	NM_002695	5434		NM_002695	ENSG00000099817	POLR2E	RPABC1|RPB5|XAP4|hRPB25|hsRPB5	RNA polymerase II, I and III subunit E	protein-coding
73718	chr15	45162921	45163950	+	0	NA	intron (NM_175940, intron 31 of 33)	intron (NM_175940, intron 31 of 33)	17772	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
61445	chr13	51944121	51944380	+	0	NA	exon (NM_001330578, exon 13 of 20)	exon (NM_001330578, exon 13 of 20)	67200	NM_000053	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
157311	chr22	44499501	44499900	+	0	NA	Intergenic	AluY|SINE|Alu	-1467	NM_032287	84247		NM_032287	ENSG00000188636	RTL6	LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2	retrotransposon Gag like 6	protein-coding
117391	chr19	19600351	19600650	+	0	NA	intron (NM_025245, intron 1 of 7)	AluJo|SINE|Alu	18187	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
72507	chr15	33194271	33195130	+	0	NA	promoter-TSS (NM_001277313)	promoter-TSS (NM_001277313)	14	NM_001277313	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
216033	chr8	9554771	9554950	+	0	NA	Intergenic	AluJb|SINE|Alu	-1052	NM_003747	8658		NM_003747	ENSG00000173273	TNKS	ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5	tankyrase	protein-coding
42806	chr11	72812051	72812150	+	0	NA	Intergenic	(AAAAC)n|Simple_repeat|Simple_repeat	-2311	NM_033388	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
53188	chr12	59808371	59808630	+	0	NA	Intergenic	Intergenic	119130	NM_004731	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
40363	chr11	63982071	63982700	+	0	NA	Intergenic	Intergenic	-3468	NR_003089	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
226353	chr9	69822301	69822730	+	0	NA	intron (NR_131757, intron 1 of 2)	intron (NR_131757, intron 1 of 2)	1698	NR_131756	138255		NM_001010940	ENSG00000204711	CFAP95	C9orf135	cilia and flagella associated protein 95	protein-coding
28404	chr10	47708821	47709080	+	0	NA	intron (NR_160661, intron 1 of 6)	MIR|SINE|MIR	2889	NR_160660	439965		NR_027634		SHLD2P3	FAM35B2|FAM35DP	shieldin complex subunit 2 pseudogene 3	pseudo
35307	chr11	1027471	1027630	+	0	NA	intron (NM_005961, intron 16 of 32)	intron (NM_005961, intron 16 of 32)	9168	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
46061	chr11	122734251	122734750	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	78778	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
142605	chr20	5590151	5590600	+	0	NA	intron (NM_019593, intron 4 of 19)	AluSx|SINE|Alu	20631	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
184315	chr5	96911721	96911980	+	0	NA	intron (NR_137637, intron 15 of 18)	AluJb|SINE|Alu	-24230	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
205069	chr7	6619851	6620350	+	0	NA	intron (NM_001353546, intron 2 of 2)	intron (NM_001353546, intron 2 of 2)	4490	NM_001353546	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
135067	chr2	156472521	156473250	+	0	NA	intron (NM_000408, intron 1 of 16)	MIRb|SINE|MIR	36506	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
125984	chr2	25288871	25289100	+	0	NA	intron (NR_135490, intron 3 of 23)	intron (NR_135490, intron 3 of 23)	-36670	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
177047	chr4	107930921	107932450	+	0	NA	exon (NM_183075, exon 1 of 5)	exon (NM_183075, exon 1 of 5)	136	NM_183075	113612		NM_183075	ENSG00000155016	CYP2U1	P450TEC|SPG49|SPG56	cytochrome P450 family 2 subfamily U member 1	protein-coding
196985	chr6	53236701	53236900	+	0	NA	Intergenic	Intergenic	-40193	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
16136	chr1	153664351	153664850	+	0	NA	intron (NM_004515, intron 8 of 13)	AluSx1|SINE|Alu	5897	NM_012437	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
29230	chr10	69065651	69065950	+	0	NA	Intergenic	Intergenic	-21803	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
141814	chr20	346071	346230	+	0	NA	promoter-TSS (NM_024958)	promoter-TSS (NM_024958)	-961	NM_001323684	80023		NM_024958	ENSG00000125841	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
211568	chr7	105673321	105674200	+	0	NA	intron (NM_001385596, intron 3 of 11)	MIR|SINE|MIR	5395	NM_001318229	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
53881	chr12	70283351	70283450	+	0	NA	intron (NM_001199302, intron 3 of 16)	AluJr|SINE|Alu	39686	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
225528	chr9	35741551	35742030	+	0	NA	exon (NM_020944, exon 4 of 17)	exon (NM_020944, exon 4 of 17)	7438	NM_020944	57704		NM_020944	ENSG00000070610	GBA2	AD035|NLGase|SPG46	glucosylceramidase beta 2	protein-coding
9503	chr1	51294201	51294400	+	0	NA	intron (NM_001144832, intron 14 of 17)	intron (NM_001144832, intron 14 of 17)	3661	NM_001297666	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
8111	chr1	39198551	39199080	+	0	NA	intron (NM_012090, intron 1 of 92)	AluSx|SINE|Alu	114648	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
148884	chr21	8454901	8455100	+	0	NA	Intergenic	AluSx1|SINE|Alu	13854	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
899	chr1	1677271	1679650	+	0	NA	intron (NM_001110781, intron 1 of 8)	intron (NM_001110781, intron 1 of 8)	14335	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
142955	chr20	19452051	19452230	+	0	NA	intron (NM_020689, intron 2 of 16)	intron (NM_020689, intron 2 of 16)	-167544	NR_024564	100130264		NR_024564	ENSG00000179447	SLC24A3-AS1	-	SLC24A3 antisense RNA 1	ncRNA
154422	chr22	35339521	35339780	+	0	NA	intron (NR_156428, intron 11 of 13)	AluYa5|SINE|Alu	-2851	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
147310	chr20	57704851	57705280	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	4950	NM_020182	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
88683	chr16	85749821	85750340	+	0	NA	intron (NR_161452, intron 1 of 4)	intron (NR_161452, intron 1 of 4)	1016	NM_206967	404550		NM_206967	ENSG00000154102	C16orf74	-	chromosome 16 open reading frame 74	protein-coding
189094	chr5	170297501	170299380	+	0	NA	promoter-TSS (NM_005565)	promoter-TSS (NM_005565)	-663	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
115681	chr19	16187901	16188100	+	0	NA	intron (NM_014077, intron 2 of 3)	AluSx1|SINE|Alu	2590	NM_014077	26017		NM_014077	ENSG00000105058	FAM32A	OTAG-12|OTAG12	family with sequence similarity 32 member A	protein-coding
67500	chr14	70943851	70944150	+	0	NA	intron (NM_014982, intron 1 of 35)	THE1C-int|LTR|ERVL-MaLR	36541	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
14575	chr1	145165301	145165780	+	0	NA	non-coding (NR_156689, exon 3 of 3)	non-coding (NR_156689, exon 3 of 3)	2067	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
59360	chr13	24627451	24627550	+	0	NA	Intergenic	Intergenic	47292	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
105962	chr18	5073251	5073750	+	0	NA	Intergenic	Intergenic	-7682	NR_146900	105371969		NR_146900	ENSG00000265514	LINC01892	-	long intergenic non-protein coding RNA 1892	ncRNA
231095	chr9	129799301	129799500	+	0	NA	Intergenic	MIRb|SINE|MIR	-3743	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
140731	chr2	234449601	234449800	+	0	NA	intron (NR_146988, intron 2 of 2)	intron (NR_146988, intron 2 of 2)	4895	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
66926	chr14	65425271	65426230	+	0	NA	intron (NM_001371533, intron 1 of 10)	AluSx3|SINE|Alu	13020	NM_001371533	2530		NM_004480	ENSG00000033170	FUT8	CDGF|CDGF1	fucosyltransferase 8	protein-coding
94856	chr17	31505871	31506300	+	0	NA	intron (NM_001346748, intron 1 of 12)	L1M5|LINE|L1	17977	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
172149	chr4	1205201	1205680	+	0	NA	intron (NR_024569, intron 1 of 3)	intron (NR_024569, intron 1 of 3)	3522	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
17866	chr1	159941571	159942100	+	0	NA	intron (NM_001135050, intron 3 of 20)	intron (NM_001135050, intron 3 of 20)	3778	NM_001135050	57549		NM_020789	ENSG00000085552	IGSF9	FP18798|IGSF9A|Nrt1	immunoglobulin superfamily member 9	protein-coding
202974	chr6	161270151	161270450	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	3761	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
152860	chr22	22297391	22298720	+	0	NA	promoter-TSS (NR_027293)	promoter-TSS (NR_027293)	-43	NR_027293	96610		NM_080926		BMS1P20	IGL|IGLV|IGLV1	BMS1 pseudogene 20	pseudo
142861	chr20	17649021	17649700	+	0	NA	intron (NM_004587, intron 3 of 24)	MIRb|SINE|MIR	32882	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
52147	chr12	54252721	54252980	+	0	NA	intron (NM_012117, intron 2 of 4)	AluSz|SINE|Alu	6695	NM_001127322	23468		NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A|HP1alpha	chromobox 5	protein-coding
224770	chr9	21996921	21997330	+	0	NA	intron (NR_047543, intron 1 of 8)	Tigger3a|DNA|TcMar-Tigger	-1801	NM_001363763	1029		NM_000077	ENSG00000147889	CDKN2A	ARF|CAI2|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding
53723	chr12	68623671	68624130	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluSc8|SINE|Alu	3475	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
132272	chr2	104849571	104850030	+	0	NA	intron (NR_037883, intron 1 of 3)	intron (NR_037883, intron 1 of 3)	1676	NR_131234	100506421		NR_037883	ENSG00000233639	PANTR1	LINC01158|linc-Brn1a|linc-POU3F3	POU3F3 adjacent non-coding transcript 1	ncRNA
213549	chr7	139103471	139103700	+	0	NA	intron (NM_020119, intron 1 of 12)	L1ME3Cz|LINE|L1	6135	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
59395	chr13	25037201	25037480	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-58796	NM_030979	5042		NM_030979	ENSG00000151846	PABPC3	PABP3|PABPL3|tPABP	poly(A) binding protein cytoplasmic 3	protein-coding
128758	chr2	62201471	62201630	+	0	NA	intron (NM_006577, intron 1 of 1)	intron (NM_006577, intron 1 of 1)	-4276	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
150730	chr21	43749571	43750350	+	0	NA	intron (NM_001331030, intron 5 of 9)	intron (NM_001331030, intron 5 of 9)	8474	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
172092	chr4	1050371	1050530	+	0	NA	Intergenic	Intergenic	37986	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
218672	chr8	58145621	58146330	+	0	NA	5' UTR (NM_001377989, exon 4 of 4)	5' UTR (NM_001377989, exon 4 of 4)	75767	NM_001377998	90362		NM_147189	ENSG00000169122	FAM110B	C8orf72	family with sequence similarity 110 member B	protein-coding
47038	chr12	454561	455700	+	0	NA	Intergenic	Intergenic	-4809	NM_173593	283358		NM_173593	ENSG00000139044	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein-coding
235264	chrX	41733971	41734750	+	0	NA	intron (NM_001126055, intron 5 of 24)	intron (NM_001126055, intron 5 of 24)	10179	NM_080817	27197		NM_080817	ENSG00000171657	GPR82	-	G protein-coupled receptor 82	protein-coding
121846	chr19	48196051	48196350	+	0	NA	exon (NM_199341, exon 4 of 4)	exon (NM_199341, exon 4 of 4)	25520	NM_199341	374920		NM_199341	ENSG00000185453	ZSWIM9	C19orf68	zinc finger SWIM-type containing 9	protein-coding
137027	chr2	190717051	190717150	+	0	NA	Intergenic	AluYa5|SINE|Alu	57942	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
63377	chr13	114055051	114055450	+	0	NA	intron (NM_001320822, intron 2 of 23).2	(TGCA)n|Simple_repeat|Simple_repeat	22705	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
207029	chr7	38630971	38631400	+	0	NA	intron (NM_139316, intron 1 of 19)	CpG	188	NM_001635	273		NM_001635	ENSG00000078053	AMPH	AMPH1	amphiphysin	protein-coding
33015	chr10	110651621	110651900	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	7424	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
156524	chr22	41412901	41414700	+	0	NA	Intergenic	CpG	31858	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
91224	chr17	3929321	3929580	+	0	NA	intron (NM_174953, intron 18 of 22)	intron (NM_174953, intron 18 of 22)	-12985	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
177404	chr4	112282571	112282730	+	0	NA	intron (NM_052864, intron 1 of 1)	LTR36|LTR|ERV1	3254	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
119458	chr19	40418801	40419830	+	0	NA	Intergenic	Intergenic	-5937	NM_181882	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
121391	chr19	46933721	46933980	+	0	NA	intron (NM_004491, intron 2 of 6)	intron (NM_004491, intron 2 of 6)	72853	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
109812	chr19	1161771	1161930	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	12418	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
89781	chr16	89477551	89477850	+	0	NA	intron (NM_001256182, intron 1 of 13)	AluSx1|SINE|Alu	12861	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
8271	chr1	39898651	39899300	+	0	NA	TTS (NM_005376)	TTS (NM_005376)	2942	NM_001033082	4610		NM_005376	ENSG00000116990	MYCL	L-Myc|LMYC|MYCL1|bHLHe38	MYCL proto-oncogene, bHLH transcription factor	protein-coding
100621	chr17	63585651	63586130	+	0	NA	intron (NR_073585, intron 6 of 7)	AluSx|SINE|Alu	-15005	NM_016360	51204		NM_016360	ENSG00000136463	TACO1	CCDC44|MC4DN8	translational activator of cytochrome c oxidase I	protein-coding
73386	chr15	42573601	42574000	+	0	NA	Intergenic	AluSx|SINE|Alu	-1806	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
46303	chr11	124916121	124916380	+	0	NA	Intergenic	L1M1|LINE|L1	-3000	NM_001037558	641654		NM_001037558	ENSG00000221932	HEPN1	-	hepatocellular carcinoma, down-regulated 1	protein-coding
227568	chr9	92147401	92147600	+	0	NA	intron (NR_027341, intron 1 of 3)	intron (NR_027341, intron 1 of 3)	6033	NR_027341	158314		NR_027341		LINC00475	C9orf44	long intergenic non-protein coding RNA 475	ncRNA
92951	chr17	17019051	17019300	+	0	NA	Intergenic	Intergenic	-23282	NM_001364716	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
25688	chr10	8767321	8768000	+	0	NA	Intergenic	Intergenic	-130329	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
40001	chr11	62642101	62642300	+	0	NA	intron (NM_198334, intron 1 of 23)	AluSg|SINE|Alu	-1982	NM_001329222	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
126819	chr2	30503251	30504130	+	0	NA	intron (NM_001304445, intron 3 of 7)	intron (NM_001304445, intron 3 of 7)	56444	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
168795	chr3	152193471	152194470	+	0	NA	intron (NR_136178, intron 1 of 2)	intron (NR_136178, intron 1 of 2)	11459	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
179252	chr4	174591121	174591850	+	0	NA	Intergenic	MIR|SINE|MIR	-68587	NM_001256307	3248		NM_000860	ENSG00000164120	HPGD	15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1	15-hydroxyprostaglandin dehydrogenase	protein-coding
13153	chr1	111721721	111721980	+	0	NA	TTS (NM_198926)	TTS (NM_198926)	17545	NM_019099	55924		NM_019099	ENSG00000197852	INKA2	C1orf183|FAM212B	inka box actin regulator 2	protein-coding
123877	chr19	55283701	55284700	+	0	NA	5' UTR (NM_032430, exon 1 of 19)	5' UTR (NM_032430, exon 1 of 19)	203	NM_032430	84446		NM_032430	ENSG00000160469	BRSK1	SAD-B|hSAD1	BR serine/threonine kinase 1	protein-coding
202127	chr6	154805301	154805600	+	0	NA	exon (NM_001286194, exon 10 of 21)	exon (NM_001286194, exon 10 of 21)	-47910	NR_036100	100422821		NR_036100	ENSG00000264814	MIR1273C	-	microRNA 1273c	ncRNA
132129	chr2	101702351	101702650	+	0	NA	intron (NM_001384572, intron 1 of 29)	AluSq2|SINE|Alu	4235	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
164268	chr3	57567921	57568880	+	0	NA	intron (NM_001322176, intron 2 of 2)	AluJb|SINE|Alu	12126	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
107922	chr18	57623871	57624380	+	0	NA	Intergenic	AluSz|SINE|Alu	-2289	NM_004539	4677		NM_004539	ENSG00000134440	NARS1	ASNRS|NARS|NEDMILEG|NEDMILG	asparaginyl-tRNA synthetase 1	protein-coding
203489	chr7	588321	588980	+	0	NA	intron (NM_001164759, intron 7 of 10)	intron (NM_001164759, intron 7 of 10)	-14195	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
133487	chr2	119932671	119933050	+	0	NA	intron (NM_002830, intron 14 of 26)	intron (NM_002830, intron 14 of 26)	-80217	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
89992	chr16	89869201	89869600	+	0	NA	intron (NM_032451, intron 13 of 14)	intron (NM_032451, intron 13 of 14)	-4192	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
90174	chr17	316171	316330	+	0	NA	intron (NM_006987, intron 5 of 9).2	intron (NM_006987, intron 5 of 9).2	-15269	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
38117	chr11	35235621	35236680	+	0	NA	Intergenic	L2c|LINE|L2	73200	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
48189	chr12	8030801	8031250	+	0	NA	Intergenic	AluSx|SINE|Alu	-1691	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
140812	chr2	236507221	236507880	+	0	NA	promoter-TSS (NR_073043)	promoter-TSS (NR_073043)	-15	NM_001270584	79781		NM_024726	ENSG00000132321	IQCA1	4930465P12Rik|DRC11|IQCA	IQ motif containing with AAA domain 1	protein-coding
89823	chr16	89571951	89572600	+	0	NA	Intergenic	Intergenic	-3483	NM_014427	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
64111	chr14	22822151	22822250	+	0	NA	Intergenic	Intergenic	-2409	NM_001126106	9056		NM_003982	ENSG00000155465	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	solute carrier family 7 member 7	protein-coding
26447	chr10	17428301	17429650	+	0	NA	intron (NR_144322, intron 2 of 6)	intron (NR_144322, intron 2 of 6)	25620	NM_001345961	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
172238	chr4	1345001	1345200	+	0	NA	Intergenic	L2a|LINE|L2	-2108	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
159620	chr3	15271421	15273800	+	0	NA	intron (NM_004844, intron 3 of 8)	intron (NM_004844, intron 3 of 8)	18426	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
149621	chr21	33394301	33394500	+	0	NA	Intergenic	Charlie19a|DNA|hAT-Charlie	-8496	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
237224	chrX	109714551	109714650	+	0	NA	intron (NM_022977, intron 1 of 16)	Tigger3|DNA|TcMar-Tigger	-17911	NR_158569	105373311		NR_158569		LOC105373311	-	uncharacterized LOC105373311	ncRNA
44372	chr11	102476701	102477200	+	0	NA	intron (NR_135076, intron 1 of 2)	MER34-int|LTR|ERV1	9695	NR_135076	102723838		NR_135076	ENSG00000255482	LOC102723838	-	uncharacterized LOC102723838	ncRNA
62392	chr13	99272921	99274000	+	0	NA	intron (NR_026644, intron 4 of 8)	L1MEh|LINE|L1	-15032	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
185571	chr5	131383951	131384050	+	0	NA	intron (NM_001038702, intron 2 of 4)	L1MEj|LINE|L1	119947	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
120208	chr19	42293171	42293330	+	0	NA	exon (NM_001304815, exon 16 of 21)	exon (NM_001304815, exon 16 of 21)	8781	NM_015125	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
169303	chr3	158659721	158660180	+	0	NA	intron (NM_001374356, intron 8 of 16)	intron (NM_001374356, intron 8 of 16)	12698	NM_020169	56925		NM_020169	ENSG00000079257	LXN	ECI|TCI	latexin	protein-coding
174190	chr4	36348471	36348880	+	0	NA	Intergenic	Penelope1_Vert|LINE|Penelope	67059	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
79406	chr16	673401	674080	+	0	NA	non-coding (NR_147956, exon 18 of 18)	non-coding (NR_147956, exon 18 of 18)	-1931	NM_001278721	9028		NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	rhomboid like 1	protein-coding
117846	chr19	31356651	31357280	+	0	NA	Intergenic	Intergenic	-7529	NR_138035	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
44901	chr11	115148151	115148250	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-185377	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
51747	chr12	53256051	53256400	+	0	NA	Intergenic	Intergenic	4130	NM_032889	84975		NM_032889	ENSG00000182544	MFSD5	SLC61A1|hsMOT2	major facilitator superfamily domain containing 5	protein-coding
112432	chr19	6299671	6300130	+	0	NA	Intergenic	Intergenic	-19925	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
63668	chr14	21057901	21058100	+	0	NA	exon (NM_138331, exon 1 of 1)	exon (NM_138331, exon 1 of 1)	178	NM_138331	122665		NM_138331	ENSG00000173431	RNASE8	RAE2	ribonuclease A family member 8	protein-coding
94699	chr17	30686771	30687130	+	0	NA	Intergenic	Intergenic	-22658	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
64818	chr14	35043421	35043680	+	0	NA	Intergenic	AluJr|SINE|Alu	-1357	NM_001079519	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
182254	chr5	57185971	57187180	+	0	NA	intron (NM_001331037, intron 2 of 12)	L1ME1|LINE|L1	11127	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
193741	chr6	31262801	31263000	+	0	NA	Intergenic	MER21C|LTR|ERVL	9192	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
49964	chr12	41188521	41188780	+	0	NA	exon (NM_001164595, exon 1 of 10)	exon (NM_001164595, exon 1 of 10)	330	NM_001164595	29951		NM_013377	ENSG00000165966	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
101075	chr17	64909651	64910100	+	0	NA	intron (NM_199340, intron 2 of 14)	intron (NM_199340, intron 2 of 14)	9616	NM_199340	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
141257	chr2	239898851	239899150	+	0	NA	intron (NR_136158, intron 9 of 10)	intron (NR_136158, intron 9 of 10)	44094	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
37418	chr11	17281121	17281380	+	0	NA	intron (NM_001352672, intron 1 of 14)	AluJb|SINE|Alu	4280	NM_001352672	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
155771	chr22	39236251	39236800	+	0	NA	intron (NM_002608, intron 1 of 6)	intron (NM_002608, intron 1 of 6)	4384	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
86101	chr16	57651071	57651230	+	0	NA	intron (NM_001370442, intron 3 of 14)	intron (NM_001370442, intron 3 of 14)	11658	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
22323	chr1	213989551	213989850	+	0	NA	intron (NM_002763, intron 1 of 4)	intron (NM_002763, intron 1 of 4)	1167	NM_002763	5629		NM_002763	ENSG00000117707	PROX1	-	prospero homeobox 1	protein-coding
130125	chr2	74585401	74585700	+	0	NA	intron (NM_001321739, intron 4 of 10)	intron (NM_001321739, intron 4 of 10)	31390	NM_001381	1796		NM_001381	ENSG00000115325	DOK1	P62DOK|pp62	docking protein 1	protein-coding
22475	chr1	221714321	221714800	+	0	NA	intron (NR_111940, intron 1 of 2)	LTR9|LTR|ERV1	22340	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
79355	chr16	625351	625850	+	0	NA	intron (NM_001172666, intron 5 of 6)	intron (NM_001172666, intron 5 of 6)	-5385	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
24918	chr10	1064351	1064900	+	0	NA	intron (NM_014023, intron 1 of 13)	AluSx|SINE|Alu	-7921	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
132994	chr2	111532271	111532430	+	0	NA	Intergenic	Intergenic	-37189	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
164296	chr3	57644501	57644850	+	0	NA	intron (NM_152678, intron 11 of 19)	intron (NM_152678, intron 11 of 19)	46886	NR_132369	106144532		NR_132369	ENSG00000272146	ARF4-AS1	-	ARF4 antisense RNA 1	ncRNA
91712	chr17	6555151	6556080	+	0	NA	intron (NM_001165966, intron 1 of 18)	intron (NM_001165966, intron 1 of 18)	940	NM_031220	83394		NM_031220	ENSG00000091622	PITPNM3	ACKR6|CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
77228	chr15	81268721	81269380	+	0	NA	intron (NM_001352685, intron 5 of 19)	intron (NM_001352685, intron 5 of 19)	-27920	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
86808	chr16	67841451	67843930	+	0	NA	exon (NM_020457, exon 1 of 1)	exon (NM_020457, exon 1 of 1)	370	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
107044	chr18	32133501	32134030	+	0	NA	Intergenic	AluSz|SINE|Alu	41159	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
228291	chr9	98097351	98097450	+	0	NA	intron (NM_014788, intron 3 of 5)	L2|LINE|L2	21822	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
4638	chr1	22123951	22124450	+	0	NA	intron (NM_030761, intron 2 of 4)	intron (NM_030761, intron 2 of 4)	18897	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
202292	chr6	157193921	157194780	+	0	NA	intron (NM_001371656, intron 16 of 20)	MIRc|SINE|MIR	129169	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
229103	chr9	114385021	114387400	+	0	NA	intron (NM_030767, intron 1 of 21)	intron (NM_030767, intron 1 of 21)	1772	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
161941	chr3	46112221	46112510	+	0	NA	Intergenic	HERVP71A-int|LTR|ERV1	-26521	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
186623	chr5	138539101	138539530	+	0	NA	intron (NM_001291975, intron 2 of 11)	intron (NM_001291975, intron 2 of 11)	2396	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
169009	chr3	152438251	152438550	+	0	NA	intron (NM_207296, intron 4 of 8)	intron (NM_207296, intron 4 of 8)	-97410	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
145770	chr20	45357251	45357750	+	0	NA	Intergenic	Intergenic	-4449	NM_001197129	90196		NM_033542	ENSG00000204070	SYS1	C20orf169|dJ453C12.4|dJ453C12.4.1	SYS1 golgi trafficking protein	protein-coding
61558	chr13	64276301	64276500	+	0	NA	Intergenic	Intergenic	-200389	NR_145420	144766		NR_145420	ENSG00000227674	LINC00355	-	long intergenic non-protein coding RNA 355	ncRNA
207247	chr7	43834101	43835450	+	0	NA	Intergenic	LTR12F|LTR|ERV1	34742	NM_032014	64951		NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
175269	chr4	67521571	67522430	+	0	NA	intron (NR_155754, intron 5 of 18)	L1MB2|LINE|L1	23503	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
137249	chr2	191811951	191812280	+	0	NA	intron (NR_157850, intron 3 of 4)	intron (NR_157850, intron 3 of 4)	19275	NR_157850	729254		NR_157850	ENSG00000225884	LOC729254	-	hCG2045843	ncRNA
52010	chr12	53978051	53978430	+	0	NA	TTS (NM_014212)	TTS (NM_014212)	-3284	NR_047517	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
154907	chr22	37184371	37184530	+	0	NA	intron (NM_031910, intron 2 of 2)	intron (NM_031910, intron 2 of 2)	3797	NM_031910	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
142348	chr20	3750851	3750950	+	0	NA	exon (NM_052970, exon 12 of 13)	exon (NM_052970, exon 12 of 13)	16853	NM_001258430	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
82543	chr16	18403271	18404030	+	0	NA	Intergenic	Intergenic	-1379	NR_036144	100422836		NR_036144	ENSG00000266291	MIR3180-3	-	microRNA 3180-3	ncRNA
20018	chr1	185302951	185303280	+	0	NA	intron (NM_006469, intron 8 of 14)	intron (NM_006469, intron 8 of 14)	14128	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
49328	chr12	21690401	21691430	+	0	NA	Intergenic	L1PA15|LINE|L1	-33060	NM_001315537	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
31607	chr10	97368171	97368550	+	0	NA	intron (NM_015179, intron 25 of 33)	intron (NM_015179, intron 25 of 33)	32980	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
21716	chr1	206765971	206767050	+	0	NA	Intergenic	Intergenic	4093	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
184426	chr5	98933271	98934400	+	0	NA	intron (NR_151718, intron 1 of 3)	intron (NR_151718, intron 1 of 3)	4701	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
342	chr1	1001641	1002650	+	0	NA	Intergenic	Intergenic	-2048	NM_001142467	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
47255	chr12	1277421	1278290	+	0	NA	intron (NM_178039, intron 13 of 17)	intron (NM_178039, intron 13 of 17)	-222636	NR_028415	100292680		NR_028415	ENSG00000249628	LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
207323	chr7	44042371	44042730	+	0	NA	TTS (NR_015401)	TTS (NR_015401)	-1927	NR_024116	401331		NR_024116		RASA4CP	RASA4P	RAS p21 protein activator 4C, pseudogene	pseudo
87430	chr16	70694771	70694930	+	0	NA	intron (NM_001351157, intron 16 of 17)	intron (NM_001351157, intron 16 of 17)	-8797	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
211792	chr7	107685201	107685680	+	0	NA	intron (NM_000441, intron 8 of 20)	intron (NM_000441, intron 8 of 20)	-23642	NR_028137	286002		NR_028137		SLC26A4-AS1	-	SLC26A4 antisense RNA 1	ncRNA
186724	chr5	139270801	139271000	+	0	NA	Intergenic	AluSz|SINE|Alu	-2852	NM_001282278	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
154657	chr22	36345451	36345650	+	0	NA	intron (NM_002473, intron 2 of 40)	intron (NM_002473, intron 2 of 40)	42417	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
188048	chr5	149860821	149861150	+	0	NA	intron (NM_000440, intron 21 of 21)	intron (NM_000440, intron 21 of 21)	71992	NR_110534	644762		NR_110534		MFFP2	-	MFF pseudogene 2	pseudo
232144	chr9	134040851	134041380	+	0	NA	intron (NM_007371, intron 8 of 11)	intron (NM_007371, intron 8 of 11)	-13175	NR_135126	100130548		NR_135126	ENSG00000235138	LOC100130548	-	uncharacterized LOC100130548	ncRNA
54732	chr12	93676971	93678530	+	0	NA	promoter-TSS (NM_001320099)	promoter-TSS (NM_001320099)	33	NM_001320099	8738		NM_003805	ENSG00000169372	CRADD	MRT34|RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding
177172	chr4	108152971	108153450	+	0	NA	intron (NM_016269, intron 3 of 11)	LTR79|LTR|ERVL	13587	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
57213	chr12	121506951	121507250	+	0	NA	intron (NM_001005366, intron 11 of 22)	AluYf1|SINE|Alu	-62748	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
190483	chr5	180312351	180312650	+	0	NA	exon (NM_005110, exon 15 of 19)	exon (NM_005110, exon 15 of 19)	-20417	NM_001135044	5601		NM_002752	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
70310	chr14	101817221	101818180	+	0	NA	intron (NM_178587, intron 1 of 11)	intron (NM_178587, intron 1 of 11)	7837	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
138820	chr2	216348871	216349550	+	0	NA	intron (NM_020814, intron 1 of 3)	intron (NM_020814, intron 1 of 3)	23273	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
144528	chr20	35710851	35710950	+	0	NA	intron (NM_184234, intron 12 of 16)	intron (NM_184234, intron 12 of 16)	11495	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
227596	chr9	92669271	92671150	+	0	NA	promoter-TSS (NM_022755)	promoter-TSS (NM_022755)	-79	NM_022755	64768		NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
56416	chr12	113299571	113299930	+	0	NA	non-coding (NR_152403, exon 16 of 16)	non-coding (NR_152403, exon 16 of 16)	8227	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
14069	chr1	120799971	120800200	+	0	NA	Intergenic	L1MB8|LINE|L1	-5471	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
54474	chr12	92029071	92029430	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	112463	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
198975	chr6	110893371	110893830	+	0	NA	exon (NM_001287214, exon 8 of 8)	exon (NM_001287214, exon 8 of 8)	18816	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
123658	chr19	54816321	54816780	+	0	NA	promoter-TSS (NM_001282170).13	promoter-TSS (NM_001282170).13	86	NM_001083539	3813		NM_001083539		KIR3DS1	CD158E2|KIR-123FM|KIR-G1|NKAT-10|NKAT10	killer cell immunoglobulin like receptor, three Ig domains and short cytoplasmic tail 1	protein-coding
47775	chr12	6555341	6556800	+	0	NA	promoter-TSS (NM_080730)	promoter-TSS (NM_080730)	-28	NM_001330324	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
143883	chr20	32569171	32569900	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	15798	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
180362	chr5	6827671	6828350	+	0	NA	promoter-TSS (NR_036242)	promoter-TSS (NR_036242)	-89	NR_036242	100422999		NR_036242	ENSG00000283420	MIR4278	-	microRNA 4278	ncRNA
117879	chr19	32672321	32673000	+	0	NA	intron (NM_032139, intron 1 of 28)	intron (NM_032139, intron 1 of 28)	2520	NM_032139	84079		NM_032139	ENSG00000105186	ANKRD27	PP12899|VARP	ankyrin repeat domain 27	protein-coding
74767	chr15	63242301	63242700	+	0	NA	intron (NM_016530, intron 1 of 7)	AluSc|SINE|Alu	-35050	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
47614	chr12	6056351	6057050	+	0	NA	intron (NM_000552, intron 15 of 51)	intron (NM_000552, intron 15 of 51)	-16517	NR_145989	109729112		NR_145989		SNORA120	-	small nucleolar RNA, H/ACA box 120	snoRNA
206961	chr7	38274571	38274730	+	0	NA	Intergenic	Intergenic	-1003	NM_001003806	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
213772	chr7	140674721	140674980	+	0	NA	intron (NM_052853, intron 2 of 7)	intron (NM_052853, intron 2 of 7)	1905	NM_052853	90956		NM_052853	ENSG00000133597	ADCK2	AARF	aarF domain containing kinase 2	protein-coding
97059	chr17	42366501	42367200	+	0	NA	intron (NM_001369516, intron 1 of 23)	L2a|LINE|L2	21592	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
12380	chr1	101261621	101261880	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	24731	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
222796	chr8	142383271	142383530	+	0	NA	intron (NM_145003, intron 1 of 13)	intron (NM_145003, intron 1 of 13)	19782	NM_001366901	203062		NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding
178430	chr4	147793821	147794280	+	0	NA	intron (NM_024605, intron 1 of 22)	L2c|LINE|L2	11455	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
236554	chrX	72254821	72255080	+	0	NA	intron (NM_001170747, intron 3 of 3)	intron (NM_001170747, intron 3 of 3)	-15923	NM_017669	54821		NM_017669	ENSG00000186871	ERCC6L	PICH|RAD26L	ERCC excision repair 6 like, spindle assembly checkpoint helicase	protein-coding
123908	chr19	55346721	55347250	+	0	NA	exon (NM_032701, exon 9 of 9)	exon (NM_032701, exon 9 of 9)	7109	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
16225	chr1	153931551	153931850	+	0	NA	intron (NM_014856, intron 24 of 27)	AluY|SINE|Alu	-8728	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
62022	chr13	86757321	86757580	+	0	NA	Intergenic	LTR21B|LTR|ERV1	-154470	NR_132371	106144533		NR_132371		LINC00430	-	long intergenic non-protein coding RNA 430	ncRNA
59870	chr13	30627251	30628280	+	0	NA	intron (NM_001321533, intron 2 of 6)	L1MB2|LINE|L1	-6450	NM_001321534	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
146874	chr20	51496101	51496580	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	-43363	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
204743	chr7	5572171	5572530	+	0	NA	Intergenic	AluSz|SINE|Alu	-20466	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
3282	chr1	15251751	15252250	+	0	NA	intron (NM_052929, intron 2 of 30)	intron (NM_052929, intron 2 of 30)	4775	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
17376	chr1	156582601	156583280	+	0	NA	intron (NM_001105669, intron 3 of 10)	intron (NM_001105669, intron 3 of 10)	3217	NM_001105669	164118		NM_001105669	ENSG00000187862	TTC24	-	tetratricopeptide repeat domain 24	protein-coding
145123	chr20	38808871	38810350	+	0	NA	intron (NM_001172735, intron 1 of 9)	MIRb|SINE|MIR	3913	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
157254	chr22	43496071	43496230	+	0	NA	intron (NM_001362786, intron 4 of 6)	intron (NM_001362786, intron 4 of 6)	-20104	NR_046563	100874197		NR_046563		EFCAB6-AS1	-	EFCAB6 antisense RNA 1	ncRNA
168822	chr3	152237801	152238000	+	0	NA	Intergenic	Intergenic	-5732	NM_001376839	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
10969	chr1	84246371	84246730	+	0	NA	Intergenic	Intergenic	-51988	NM_001010971	148418		NM_001010971	ENSG00000203943	SAMD13	DJL|HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding
107450	chr18	46343671	46344630	+	0	NA	intron (NM_001256758, intron 1 of 5)	intron (NM_001256758, intron 1 of 5)	9926	NM_001256758	494470		NM_152470	ENSG00000141622	ARK2C	ARKL2|RNF111L2|RNF165|lncAMPC	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C	protein-coding
183180	chr5	75524051	75524350	+	0	NA	intron (NM_001345921, intron 1 of 13)	intron (NM_001345921, intron 1 of 13)	-12219	NM_001130105	10087		NM_005713	ENSG00000113163	CERT1	CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11	ceramide transporter 1	protein-coding
37850	chr11	33722671	33723030	+	0	NA	promoter-TSS (NM_001127226)	promoter-TSS (NM_001127226)	102	NM_001127227	966		NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
206855	chr7	37433351	37433450	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	15552	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
60583	chr13	41927751	41927850	+	0	NA	intron (NM_015058, intron 2 of 44)	L1MA9|LINE|L1	33285	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
39713	chr11	61757151	61757250	+	0	NA	non-coding (NR_026882, exon 2 of 4)	non-coding (NR_026882, exon 2 of 4)	464	NR_026882	26070		NR_026882	ENSG00000124915	MYRF-AS1	DKFZP434K028	MYRF antisense RNA 1	ncRNA
2844	chr1	11261721	11263230	+	0	NA	promoter-TSS (NM_004958)	promoter-TSS (NM_004958)	76	NM_004958	2475		NM_004958	ENSG00000198793	MTOR	FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS	mechanistic target of rapamycin kinase	protein-coding
52641	chr12	56280401	56280800	+	0	NA	intron (NM_004077, intron 6 of 10)	AluSx|SINE|Alu	13274	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
211547	chr7	105445471	105445830	+	0	NA	Intergenic	L1MB8|LINE|L1	-56260	NM_001350740	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
3611	chr1	16356101	16356700	+	0	NA	Intergenic	Intergenic	-3920	NM_018994	54455		NM_018994	ENSG00000037637	FBXO42	Fbx42|JFK	F-box protein 42	protein-coding
194594	chr6	33451371	33451900	+	0	NA	intron (NM_006772, intron 18 of 18).2	intron (NM_006772, intron 18 of 18).2	-2941	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
129061	chr2	65071601	65072800	+	0	NA	exon (NM_001319101, exon 3 of 7)	exon (NM_001319101, exon 3 of 7)	15784	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
177068	chr4	108044521	108044780	+	0	NA	Intergenic	Intergenic	39986	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
40873	chr11	65107771	65108230	+	0	NA	exon (NM_013265, exon 4 of 10)	exon (NM_013265, exon 4 of 10)	-3854	NM_001277233	7108		NM_003273	ENSG00000149809	TM7SF2	ANG1|C14SR|DHCR14A|NET47	transmembrane 7 superfamily member 2	protein-coding
135048	chr2	156340021	156342100	+	0	NA	non-coding (NR_147695, exon 1 of 1)	non-coding (NR_147695, exon 1 of 1)	1060	NR_147695	440918		NR_147695		FLJ46875	-	uncharacterized LOC440918	ncRNA
216682	chr8	22158201	22158930	+	0	NA	promoter-TSS (NM_001385659)	promoter-TSS (NM_001385659)	86	NM_001385659	6440		NM_003018	ENSG00000168484	SFTPC	BRICD6|PSP-C|SFTP2|SMDP2|SP-C|SP5	surfactant protein C	protein-coding
159402	chr3	13454951	13455250	+	0	NA	Intergenic	Intergenic	24953	NR_046690	100874101		NR_046690	ENSG00000244502	HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
204644	chr7	5417821	5418200	+	0	NA	intron (NM_001080495, intron 2 of 29)	intron (NM_001080495, intron 2 of 29)	5536	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
103095	chr17	77335601	77335800	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	16185	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
185820	chr5	132449571	132450280	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	38996	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
225739	chr9	37033921	37035380	+	0	NA	promoter-TSS (NM_001280548)	promoter-TSS (NM_001280548)	-382	NM_001280556	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
29954	chr10	73492951	73493250	+	0	NA	intron (NM_001289969, intron 1 of 12)	AluSx3|SINE|Alu	-2652	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
139156	chr2	219161851	219162250	+	0	NA	exon (NM_001144889, exon 12 of 12)	exon (NM_001144889, exon 12 of 12)	-1235	NR_165304	79840		NM_024782	ENSG00000187736	NHEJ1	XLF	non-homologous end joining factor 1	protein-coding
1468	chr1	2686671	2687030	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-53834	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
76643	chr15	75624421	75624800	+	0	NA	intron (NM_001042588, intron 1 of 8)	AluYj4|SINE|Alu	1115	NM_005701	10073		NM_005701	ENSG00000169371	SNUPN	KPNBL|RNUT1|Snurportin1	snurportin 1	protein-coding
23749	chr1	232629421	232631030	+	0	NA	promoter-TSS (NM_020808)	promoter-TSS (NM_020808)	-92	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
220467	chr8	100428521	100429300	+	0	NA	Intergenic	Intergenic	46147	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
159174	chr3	12816171	12816530	+	0	NA	intron (NM_012298, intron 7 of 12)	intron (NM_012298, intron 7 of 12)	19670	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
57335	chr12	121699571	121699930	+	0	NA	Intergenic	AluSz|SINE|Alu	-13002	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
211825	chr7	108416101	108416530	+	0	NA	intron (NM_001371128, intron 1 of 31)	intron (NM_001371128, intron 1 of 31)	40082	NM_005010	4897		NM_005010	ENSG00000091129	NRCAM	NEDNMS	neuronal cell adhesion molecule	protein-coding
166615	chr3	119387251	119387350	+	0	NA	intron (NM_020754, intron 6 of 11)	LTR13|LTR|ERVK	-64540	NR_046748	100874246		NR_046748	ENSG00000241155	ARHGAP31-AS1	-	ARHGAP31 antisense RNA 1	ncRNA
69854	chr14	99260651	99261520	+	0	NA	intron (NM_022898, intron 1 of 2)	intron (NM_022898, intron 1 of 2)	11112	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
80667	chr16	3018101	3018750	+	0	NA	promoter-TSS (NM_021195)	promoter-TSS (NM_021195)	-242	NM_021195	9074		NM_021195	ENSG00000184697	CLDN6	-	claudin 6	protein-coding
225865	chr9	38400721	38400980	+	0	NA	Intergenic	Intergenic	8148	NM_000692	219		NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
49098	chr12	14630101	14630500	+	0	NA	intron (NM_004963, intron 19 of 26)	intron (NM_004963, intron 19 of 26)	-62417	NM_024829	79887		NM_024829	ENSG00000121316	PLBD1	-	phospholipase B domain containing 1	protein-coding
83934	chr16	29083671	29083830	+	0	NA	intron (NR_003369, intron 3 of 16)	L1ME4a|LINE|L1	8908	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
3954	chr1	18637771	18637930	+	0	NA	intron (NM_001135254, intron 4 of 8)	CpG	7004	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
205228	chr7	7978801	7979200	+	0	NA	intron (NM_138426, intron 1 of 7)	Tigger10|DNA|TcMar-Tigger	10204	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
48387	chr12	9610671	9610830	+	0	NA	Intergenic	L1P2|LINE|L1	-2834	NM_002258	3820		NM_002258	ENSG00000111796	KLRB1	CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A	killer cell lectin like receptor B1	protein-coding
235582	chrX	47562671	47563230	+	0	NA	5' UTR (NM_001654, exon 2 of 16)	5' UTR (NM_001654, exon 2 of 16)	1745	NM_001654	369		NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
38319	chr11	44068001	44068400	+	0	NA	intron (NM_001127219, intron 2 of 14)	MIRb|SINE|MIR	1930	NM_032592	84680		NM_032592	ENSG00000110455	ACCS	ACS|PHACS	1-aminocyclopropane-1-carboxylate synthase homolog (inactive)	protein-coding
193412	chr6	30445871	30446830	+	0	NA	Intergenic	Intergenic	-43159	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
92248	chr17	7928471	7928880	+	0	NA	intron (NM_004732, intron 1 of 13)	intron (NM_004732, intron 1 of 13)	760	NM_004732	9196		NM_004732	ENSG00000170049	KCNAB3	AKR6A9|KCNA3.1B|KCNA3B|KV-BETA-3	potassium voltage-gated channel subfamily A regulatory beta subunit 3	protein-coding
177096	chr4	108073721	108074150	+	0	NA	intron (NM_016269, intron 8 of 11)	AluSc8|SINE|Alu	69271	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
215753	chr8	1975351	1975700	+	0	NA	intron (NM_014867, intron 1 of 1)	Tigger3a|DNA|TcMar-Tigger	1848	NM_014867	9920		NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
175137	chr4	55397871	55398450	+	0	NA	intron (NM_018475, intron 1 of 5)	L3|LINE|CR1	2203	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
16672	chr1	155184971	155185950	+	0	NA	TTS (NM_001282378)	TTS (NM_001282378)	7449	NM_001204287	4582		NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|ADTKD2|CA 15-3|CD227|Ca15-3|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding
166488	chr3	114298701	114298930	+	0	NA	intron (NM_173799, intron 2 of 3)	intron (NM_173799, intron 2 of 3)	4787	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
121436	chr19	47029501	47029700	+	0	NA	intron (NM_002517, intron 3 of 11)	AluSq|SINE|Alu	-5717	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
64450	chr14	24234201	24234400	+	0	NA	intron (NM_001351024, intron 4 of 10).2	intron (NM_001351024, intron 4 of 10).2	1371	NM_001351026	51292		NM_016576	ENSG00000100938	GMPR2	GMPR 2	guanosine monophosphate reductase 2	protein-coding
137276	chr2	195404851	195405030	+	0	NA	Intergenic	L1MA8|LINE|L1	-252018	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
93287	chr17	18130801	18131000	+	0	NA	intron (NM_016239, intron 7 of 64)	intron (NM_016239, intron 7 of 64)	-13339	NR_164159	105371566		NR_164159		LOC105371566	-	uncharacterized LOC105371566	ncRNA
22093	chr1	211548671	211548830	+	0	NA	Intergenic	Intergenic	30411	NM_021194	7779		NM_021194	ENSG00000170385	SLC30A1	ZNT1|ZRC1	solute carrier family 30 member 1	protein-coding
220838	chr8	102865701	102865900	+	0	NA	intron (NR_126338, intron 1 of 3)	intron (NR_126338, intron 1 of 3)	1529	NR_126338	100506753		NR_126338		MAILR	AZIN1-AS1|H22954|MAIL1	macrophage interferon regulatory lncRNA	ncRNA
234627	chrX	19877571	19878330	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	9650	NM_001353891	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
121897	chr19	48373501	48373900	+	0	NA	exon (NM_012451, exon 3 of 5)	exon (NM_012451, exon 3 of 5)	9333	NM_012451	23546		NM_012451	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding
6050	chr1	27131601	27131800	+	0	NA	intron (NM_003047, intron 1 of 11)	AluSc|SINE|Alu	23425	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
104629	chr17	81435001	81435530	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	15923	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
225951	chr9	41074071	41075180	+	0	NA	promoter-TSS (NR_002836)	promoter-TSS (NR_002836)	0	NR_002836	595135		NR_002836	ENSG00000290923	PGM5P2	-	phosphoglucomutase 5 pseudogene 2	pseudo
215904	chr8	8147801	8148200	+	0	NA	intron (NR_147089, intron 2 of 3)	AluSx1|SINE|Alu	-58911	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
154878	chr22	37141371	37141550	+	0	NA	intron (NM_000878, intron 4 of 9)	MER52D|LTR|ERV1	8456	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
15497	chr1	150432601	150433200	+	0	NA	intron (NM_015203, intron 2 of 10)	AluJb|SINE|Alu	-54519	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
27265	chr10	29909071	29909230	+	0	NA	Intergenic	Intergenic	150436	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
1591	chr1	3617021	3617280	+	0	NA	Intergenic	(CCCT)n|Simple_repeat|Simple_repeat	-5642	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
222768	chr8	141713711	141714000	+	0	NA	Intergenic	(TGATGG)n|Simple_repeat|Simple_repeat	72458	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
215654	chr8	406301	407440	+	0	NA	promoter-TSS (NM_012173)	promoter-TSS (NM_012173)	62	NM_012173	26260		NM_012173	ENSG00000147364	FBXO25	FBX25	F-box protein 25	protein-coding
80378	chr16	2535371	2535530	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2571	NM_031268	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
225601	chr9	36151551	36153230	+	0	NA	intron (NM_022343, intron 4 of 4)	intron (NM_022343, intron 4 of 4)	15605	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
138571	chr2	207715601	207715800	+	0	NA	intron (NM_001330218, intron 1 of 9)	AluSq2|SINE|Alu	4060	NM_001330218	151195		NM_152523	ENSG00000163249	CCNYL1	-	cyclin Y like 1	protein-coding
123371	chr19	53897871	53898030	+	0	NA	intron (NM_001316329, intron 9 of 18)	intron (NM_001316329, intron 9 of 18)	-11328	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
88644	chr16	85640851	85641150	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	27678	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
118523	chr19	36009121	36010180	+	0	NA	promoter-TSS (NM_001297735)	promoter-TSS (NM_001297735)	-837	NM_001039876	163183		NM_153233	ENSG00000181392	SYNE4	C19orf46|DFNB76|KASH4|Nesp4	spectrin repeat containing nuclear envelope family member 4	protein-coding
27290	chr10	30398001	30398950	+	0	NA	Intergenic	Intergenic	-26568	NR_120609	729668		NR_003524		GOLGA2P6	-	GOLGA2 pseudogene 6	pseudo
63179	chr13	113729451	113729550	+	0	NA	intron (NM_002929, intron 4 of 6)	intron (NM_002929, intron 4 of 6)	21589	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
176385	chr4	88615001	88615200	+	0	NA	intron (NM_001375479, intron 4 of 25)	intron (NM_001375479, intron 4 of 25)	22620	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
32701	chr10	104034501	104034900	+	0	NA	exon (NM_000494, exon 51 of 56)	exon (NM_000494, exon 51 of 56)	13486	NR_030760	100126326		NR_030760	ENSG00000283788	MIR936	MIRN936|hsa-mir-936	microRNA 936	ncRNA
55802	chr12	108696351	108696650	+	0	NA	intron (NM_014325, intron 2 of 10)	intron (NM_014325, intron 2 of 10)	6498	NM_001105237	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
58996	chr13	20090021	20090650	+	0	NA	Intergenic	Intergenic	-12366	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
165016	chr3	71391151	71391650	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-86629	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
14603	chr1	145278551	145279450	+	0	NA	Intergenic	AluJb|SINE|Alu	-2116	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
59785	chr13	30255701	30255900	+	0	NA	intron (NM_032116, intron 3 of 10)	intron (NM_032116, intron 3 of 10)	51211	NM_001014380	84056		NM_032116	ENSG00000102781	KATNAL1	-	katanin catalytic subunit A1 like 1	protein-coding
67570	chr14	71437971	71438150	+	0	NA	promoter-TSS (NM_001284247)	promoter-TSS (NM_001284247)	-879	NM_001284247	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
97834	chr17	44919701	44920380	+	0	NA	Intergenic	Intergenic	-4540	NM_002055	2670		NM_002055	ENSG00000131095	GFAP	ALXDRD	glial fibrillary acidic protein	protein-coding
73261	chr15	41827291	41829180	+	0	NA	TTS (NM_001128608)	TTS (NM_001128608)	143	NM_001114632	100137047		NM_001114632	ENSG00000243789	JMJD7	-	jumonji domain containing 7	protein-coding
79115	chr16	206771	206930	+	0	NA	intron (NM_018032, intron 4 of 8)	FLAM_C|SINE|Alu	22599	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
189794	chr5	176812221	176812480	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	1791	NM_133369	90249		NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
110122	chr19	1578521	1579180	+	0	NA	intron (NM_001281453, intron 5 of 6)	intron (NM_001281453, intron 5 of 6)	-10525	NM_001174118	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
61182	chr13	49151371	49151530	+	0	NA	intron (NM_001079673, intron 8 of 25)	L1M2|LINE|L1	41133	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
62586	chr13	99991771	99991930	+	0	NA	Intergenic	Intergenic	6059	NR_047483	100861542		NR_047483	ENSG00000260738	LINC00554	lncZic2	long intergenic non-protein coding RNA 554	ncRNA
174821	chr4	48140901	48141450	+	0	NA	intron (NM_003215, intron 15 of 17)	intron (NM_003215, intron 15 of 17)	-6925	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
108695	chr18	77056021	77056300	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-39105	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
135767	chr2	169684451	169684550	+	0	NA	intron (NM_001085447, intron 1 of 8)	L1MB7|LINE|L1	9905	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
177747	chr4	122541951	122542950	+	0	NA	Intergenic	Intergenic	-76533	NR_104126	100996941		NR_104126	ENSG00000227145	IL21-AS1	-	IL21 antisense RNA 1	ncRNA
205769	chr7	23526421	23526730	+	0	NA	intron (NM_001362760, intron 1 of 8)	intron (NM_001362760, intron 1 of 8)	5406	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
101498	chr17	67656851	67657150	+	0	NA	intron (NM_181671, intron 6 of 9)	intron (NM_181671, intron 6 of 9)	-60833	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
130439	chr2	85415171	85415800	+	0	NA	Intergenic	L1ME2z|LINE|L1	-1411	NM_001256139	822		NM_001747	ENSG00000042493	CAPG	AFCP|HEL-S-66|MCP	capping actin protein, gelsolin like	protein-coding
47880	chr12	6694151	6694450	+	0	NA	3' UTR (NM_001244015, exon 6 of 6)	3' UTR (NM_001244015, exon 6 of 6)	-4728	NM_001039920	171017		NM_133476	ENSG00000126746	ZNF384	CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1	zinc finger protein 384	protein-coding
200437	chr6	135024321	135024580	+	0	NA	intron (NM_001363686, intron 4 of 18)	AluY|SINE|Alu	30372	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
109304	chr19	568521	569150	+	0	NA	Intergenic	AluSz|SINE|Alu	-2448	NM_198591	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
65015	chr14	39017201	39017630	+	0	NA	Intergenic	L1PA4|LINE|L1	-85725	NR_146545	105370458		NR_146545	ENSG00000258651	SEC23A-AS1	-	SEC23A antisense RNA 1	ncRNA
28474	chr10	49508101	49508850	+	0	NA	intron (NM_001346440, intron 5 of 20)	intron (NM_001346440, intron 5 of 20)	15806	NM_170753	267004		NM_170753		PGBD3	-	piggyBac transposable element derived 3	protein-coding
35377	chr11	1301751	1302780	+	0	NA	intron (NM_001318516, intron 1 of 4)	intron (NM_001318516, intron 1 of 4)	525	NM_001318514	54472		NM_019009	ENSG00000078902	TOLLIP	IL-1RAcPIP	toll interacting protein	protein-coding
151852	chr22	18573921	18575300	+	0	NA	Intergenic	Intergenic	-25782	NR_003563	728233		NR_003563	ENSG00000290425	PI4KAP1	-	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudo
42876	chr11	73314521	73315080	+	0	NA	intron (NM_014786, intron 1 of 20)	intron (NM_014786, intron 1 of 20)	-5439	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
64896	chr14	35393551	35393850	+	0	NA	Intergenic	AluSc8|SINE|Alu	11049	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
72577	chr15	34609651	34609980	+	0	NA	Intergenic	Intergenic	-26164	NM_001023567	440270		NM_001023567	ENSG00000215252	GOLGA8B	GOLGA5	golgin A8 family member B	protein-coding
216733	chr8	22447951	22449050	+	0	NA	intron (NM_005605, intron 1 of 13)	AluSp|SINE|Alu	7422	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
219530	chr8	75407401	75407800	+	0	NA	promoter-TSS (NM_001330561)	promoter-TSS (NM_001330561)	-49	NM_001330561	3174		NM_004133	ENSG00000164749	HNF4G	NR2A2|NR2A3	hepatocyte nuclear factor 4 gamma	protein-coding
176157	chr4	83231571	83232200	+	0	NA	Intergenic	Intergenic	52913	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
109031	chr18	79731951	79732430	+	0	NA	intron (NM_001318511, intron 11 of 11)	intron (NM_001318511, intron 11 of 11)	50760	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
160721	chr3	32431571	32431730	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	39797	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
167349	chr3	128761371	128761930	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	35467	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
194174	chr6	32112401	32112800	+	0	NA	Intergenic	Intergenic	-3262	NM_001365276	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
180260	chr5	1709821	1710370	+	0	NA	Intergenic	L1PA3|LINE|L1	-1227	NR_036240	100422966		NR_036240	ENSG00000263746	MIR4277	-	microRNA 4277	ncRNA
127124	chr2	37656171	37657450	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	14832	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
111977	chr19	4869001	4869400	+	0	NA	Intergenic	AluSz|SINE|Alu	-1533	NM_001164189	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
172792	chr4	2949821	2950080	+	0	NA	exon (NM_003703, exon 8 of 19)	exon (NM_003703, exon 8 of 19)	13456	NM_001291978	8602		NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
230108	chr9	127607751	127608980	+	0	NA	Intergenic	Intergenic	-3547	NM_001374309	6812		NM_003165	ENSG00000136854	STXBP1	DEE4|MUNC18-1|N-Sec1|NSEC1|P67|RBSEC1|UNC18|unc-18A|unc18-1	syntaxin binding protein 1	protein-coding
150030	chr21	37273901	37274130	+	0	NA	Intergenic	Intergenic	-5907	NM_001331018	10311		NM_006052	ENSG00000157538	VPS26C	DCRA|DSCR3|DSCRA	VPS26 endosomal protein sorting factor C	protein-coding
96164	chr17	39703071	39703230	+	0	NA	intron (NM_001382783, intron 2 of 27)	intron (NM_001382783, intron 2 of 27)	3086	NM_004448	2064		NM_004448	ENSG00000141736	ERBB2	CD340|HER-2|HER-2/neu|HER2|MLN 19|MLN-19|NEU|NGL|TKR1|VSCN2|c-ERB-2|c-ERB2|p185(erbB2)	erb-b2 receptor tyrosine kinase 2	protein-coding
226931	chr9	79601371	79601530	+	0	NA	5' UTR (NM_001282760, exon 5 of 21)	5' UTR (NM_001282760, exon 5 of 21)	28273	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
118338	chr19	35614021	35614480	+	0	NA	intron (NM_015302, intron 4 of 18)	AluSx|SINE|Alu	1515	NM_015302	23354		NM_015302	ENSG00000249115	HAUS5	KIAA0841|dgt5	HAUS augmin like complex subunit 5	protein-coding
128058	chr2	47788471	47788930	+	0	NA	intron (NM_001281494, intron 1 of 9)	AluSx1|SINE|Alu	4745	NM_001281494	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
124918	chr2	8518971	8520000	+	0	NA	Intergenic	Intergenic	64307	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
73592	chr15	44541021	44541580	+	0	NA	intron (NM_001284336, intron 2 of 5)	intron (NM_001284336, intron 2 of 5)	4153	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
12481	chr1	107935351	107935880	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-28828	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
200896	chr6	139031371	139031600	+	0	NA	intron (NM_021243, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	2740	NM_021243	58527		NM_021243	ENSG00000146386	ABRACL	C6orf115|Costars|HSPC280|PRO2013	ABRA C-terminal like	protein-coding
224070	chr9	4077571	4077730	+	0	NA	intron (NM_001042413, intron 4 of 10)	LTR50|LTR|ERVL	74533	NM_152629	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
189693	chr5	176430171	176430550	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-13791	NR_045724	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
35668	chr11	1871921	1872200	+	0	NA	intron (NM_001013254, intron 1 of 10)	intron (NM_001013254, intron 1 of 10)	1136	NM_001013255	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
8565	chr1	41359051	41359630	+	0	NA	Intergenic	Intergenic	-2094	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
70150	chr14	100288671	100288830	+	0	NA	Intergenic	Intergenic	11393	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
19997	chr1	185241201	185241450	+	0	NA	intron (NM_017673, intron 16 of 18)	intron (NM_017673, intron 16 of 18)	75918	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
199878	chr6	127815621	127816150	+	0	NA	intron (NM_001010923, intron 3 of 5).2	intron (NM_001010923, intron 3 of 5).2	39303	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
134396	chr2	136425071	136425230	+	0	NA	Intergenic	Intergenic	-307001	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
1941	chr1	6497201	6498600	+	0	NA	promoter-TSS (NM_001042663)	promoter-TSS (NM_001042663)	-488	NM_001042663	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
216634	chr8	22106271	22107230	+	0	NA	TTS (NM_024815)	TTS (NM_024815)	2669	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
222229	chr8	133090921	133091580	+	0	NA	intron (NM_001045556, intron 1 of 8)	intron (NM_001045556, intron 1 of 8)	11352	NM_001282964	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
140304	chr2	232445471	232445630	+	0	NA	Intergenic	Intergenic	-10603	NM_001631	248		NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
26853	chr10	24881851	24882680	+	0	NA	intron (NM_020200, intron 3 of 8)	L2c|LINE|L2	70341	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
191843	chr6	15189371	15190000	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-56384	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
140031	chr2	231123551	231124050	+	0	NA	5' UTR (NM_000867, exon 2 of 4)	5' UTR (NM_000867, exon 2 of 4)	1242	NM_000867	3357		NM_000867	ENSG00000135914	HTR2B	5-HT(2B)|5-HT-2B|5-HT2B	5-hydroxytryptamine receptor 2B	protein-coding
231795	chr9	132353871	132355720	+	0	NA	promoter-TSS (NM_001351527)	promoter-TSS (NM_001351527)	61	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
135510	chr2	162012721	162012980	+	0	NA	intron (NR_166824, intron 19 of 25)	intron (NR_166824, intron 19 of 25)	61365	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
5444	chr1	25590301	25590750	+	0	NA	Intergenic	Intergenic	-26266	NM_020379	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
14505	chr1	144567251	144568450	+	0	NA	Intergenic	CpG	-15907	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
97017	chr17	42300801	42301600	+	0	NA	intron (NM_001288719, intron 7 of 17)	intron (NM_001288719, intron 7 of 17)	13144	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
69039	chr14	91854371	91854730	+	0	NA	intron (NM_001128596, intron 1 of 11)	intron (NM_001128596, intron 1 of 11)	12986	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
71838	chr15	22217271	22218180	+	0	NA	Intergenic	AluJo|SINE|Alu	7604	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
146691	chr20	50538501	50538700	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	28217	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138191	chr2	202659221	202659880	+	0	NA	intron (NM_173511, intron 1 of 7)	AluJo|SINE|Alu	24581	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
8867	chr1	43452001	43452480	+	0	NA	exon (NM_031207, exon 3 of 8)	exon (NM_031207, exon 3 of 8)	1691	NM_031207	81888		NM_031207	ENSG00000178922	HYI	HT036	hydroxypyruvate isomerase (putative)	protein-coding
21798	chr1	207069121	207069500	+	0	NA	intron (NM_001018053, intron 10 of 14)	MIRb|SINE|MIR	16035	NM_001018053	5208		NM_006212	ENSG00000123836	PFKFB2	PFK-2/FBPase-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding
210094	chr7	97116371	97116630	+	0	NA	Intergenic	MER57C2|LTR|ERV1	-1198	NM_020186	57001		NM_020186	ENSG00000196636	SDHAF3	ACN9|DC11|LYRM10|Sdh7	succinate dehydrogenase complex assembly factor 3	protein-coding
57042	chr12	120783251	120783550	+	0	NA	intron (NM_139015, intron 5 of 10)	intron (NM_139015, intron 5 of 10)	57574	NM_001302554	35		NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	acyl-CoA dehydrogenase short chain	protein-coding
200868	chr6	138772901	138774130	+	0	NA	promoter-TSS (NM_015439)	promoter-TSS (NM_015439)	188	NR_161204	100507462		NM_001242740	ENSG00000279968	CCDC28A-AS1	GVQW2	CCDC28A antisense RNA 1	ncRNA
66953	chr14	65849471	65849630	+	0	NA	Intergenic	Intergenic	378448	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
94823	chr17	31371921	31372180	+	0	NA	intron (NM_001042492, intron 57 of 57)	intron (NM_001042492, intron 57 of 57)	-19625	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
127999	chr2	46984301	46984500	+	0	NA	intron (NM_020458, intron 5 of 19)	MIR|SINE|MIR	-42545	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
217888	chr8	37875351	37875650	+	0	NA	intron (NM_025151, intron 2 of 4)	MER20|DNA|hAT-Charlie	23997	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
56105	chr12	110734301	110734900	+	0	NA	intron (NM_002710, intron 1 of 6)	AluSp|SINE|Alu	8291	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
139203	chr2	219257201	219257400	+	0	NA	intron (NM_001355221, intron 1 of 3)	AluSc8|SINE|Alu	-2692	NM_001278552	7277		NM_006000	ENSG00000127824	TUBA4A	ALS22|H2-ALPHA|TUBA1	tubulin alpha 4a	protein-coding
20096	chr1	186680301	186680730	+	0	NA	promoter-TSS (NR_125801)	promoter-TSS (NR_125801)	-92	NM_000963	5743		NM_000963	ENSG00000073756	PTGS2	COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2	prostaglandin-endoperoxide synthase 2	protein-coding
94992	chr17	32353601	32354680	+	0	NA	intron (NM_001098507, intron 2 of 11)	AluJr|SINE|Alu	3983	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
75139	chr15	64595071	64595800	+	0	NA	intron (NM_015042, intron 2 of 9)	MLT1K|LTR|ERVL-MaLR	107846	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
71131	chr14	104972471	104972900	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	-2178	NM_001350929	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
235534	chrX	47229621	47229880	+	0	NA	3' UTR (NM_001170460, exon 16 of 16)	3' UTR (NM_001170460, exon 16 of 16)	-3259	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
13313	chr1	113417371	113418180	+	0	NA	intron (NM_152900, intron 1 of 20)	L2c|LINE|L2	27260	NM_152900	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
222047	chr8	130250401	130250680	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	45993	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
220225	chr8	96283371	96284180	+	0	NA	intron (NM_001290225, intron 2 of 10)	Tigger16a|DNA|TcMar-Tigger	21873	NM_014754	9791		NM_014754	ENSG00000156471	PTDSS1	LMHD|PSS1|PSSA	phosphatidylserine synthase 1	protein-coding
142216	chr20	3054751	3054850	+	0	NA	Intergenic	L1MC4|LINE|L1	8748	NM_030811	64949		NM_030811	ENSG00000125901	MRPS26	C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3|mS26	mitochondrial ribosomal protein S26	protein-coding
134368	chr2	136237251	136237550	+	0	NA	Intergenic	AluJb|SINE|Alu	-119251	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
55362	chr12	104219671	104220260	+	0	NA	intron (NM_001093771, intron 1 of 16)	MER5A|DNA|hAT-Charlie	4186	NM_001093771	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
156690	chr22	41672401	41672600	+	0	NA	Intergenic	AluSg|SINE|Alu	16367	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
116610	chr19	18279201	18280800	+	0	NA	3' UTR (NM_001286968, exon 1 of 1)	3' UTR (NM_001286968, exon 1 of 1)	1622	NM_001286968	3727		NM_005354	ENSG00000130522	JUND	AP-1	JunD proto-oncogene, AP-1 transcription factor subunit	protein-coding
56498	chr12	116274221	116274550	+	0	NA	intron (NM_015335, intron 1 of 30)	intron (NM_015335, intron 1 of 30)	3308	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
53756	chr12	68665751	68666100	+	0	NA	3' UTR (NM_015646, exon 8 of 8)	3' UTR (NM_015646, exon 8 of 8)	20934	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
216116	chr8	11285971	11286800	+	0	NA	intron (NM_015458, intron 1 of 9)	AluSq|SINE|Alu	1569	NM_015458	66036		NM_015458	ENSG00000104643	MTMR9	C8orf9|LIP-STYX|MTMR8	myotubularin related protein 9	protein-coding
57554	chr12	122206071	122206730	+	0	NA	exon (NM_001330492, exon 2 of 2)	exon (NM_001330492, exon 2 of 2)	2691	NM_030765	79369		NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
202738	chr6	158998921	159000450	+	0	NA	exon (NM_001346418, exon 1 of 6)	exon (NM_001346418, exon 1 of 6)	502	NR_144434	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
95236	chr17	35345751	35347250	+	0	NA	Intergenic	(CCTC)n|Simple_repeat|Simple_repeat	27121	NM_001376010	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
89699	chr16	89397901	89398100	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-32918	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
37496	chr11	18404101	18405000	+	0	NA	intron (NM_001165416, intron 6 of 6)	AluY|SINE|Alu	-7756	NM_002301	3948		NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
38357	chr11	44596601	44598150	+	0	NA	intron (NM_002231, intron 3 of 9)	intron (NM_002231, intron 3 of 9)	31712	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
25454	chr10	6602221	6602480	+	0	NA	Intergenic	Intergenic	-16366	NR_120634	101928150		NR_120634		LINC02648	-	long intergenic non-protein coding RNA 2648	ncRNA
227092	chr9	85723001	85723780	+	0	NA	intron (NM_001330701, intron 1 of 25)	L1PA6|LINE|L1	18564	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
122244	chr19	49017171	49018930	+	0	NA	promoter-TSS (NM_000894)	promoter-TSS (NM_000894)	-959	NM_000894	3972		NM_000894	ENSG00000104826	LHB	CGB4|HH23|LSH-B|LSH-beta	luteinizing hormone subunit beta	protein-coding
156946	chr22	42331101	42331300	+	0	NA	Intergenic	Intergenic	38008	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
36293	chr11	3826001	3826400	+	0	NA	TTS (NM_001665)	TTS (NM_001665)	14759	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
205835	chr7	24872221	24872550	+	0	NA	intron (NM_015550, intron 2 of 22)	intron (NM_015550, intron 2 of 22)	20236	NM_145322	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
64351	chr14	24080801	24082480	+	0	NA	intron (NM_001354770, intron 2 of 2)	CpG	10078	NM_006032	9362		NM_006032	ENSG00000100884	CPNE6	copine-6	copine 6	protein-coding
60685	chr13	43785751	43786430	+	0	NA	non-coding (NR_145132, exon 2 of 2)	non-coding (NR_145132, exon 2 of 2)	882	NM_001347964	55068		NM_017993	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
24996	chr10	3172321	3173650	+	0	NA	promoter-TSS (NR_144638)	promoter-TSS (NR_144638)	-144	NM_001242307	10531		NM_014889	ENSG00000107959	PITRM1	MP1|PreP|SCAR30	pitrilysin metallopeptidase 1	protein-coding
94781	chr17	30969971	30971930	+	0	NA	promoter-TSS (NM_001184992)	promoter-TSS (NM_001184992)	-89	NM_197939	84282		NM_032322	ENSG00000181481	RNF135	L13|MMFD|REUL|Riplet	ring finger protein 135	protein-coding
209752	chr7	87204771	87205330	+	0	NA	intron (NR_138030, intron 1 of 3)	THE1B-int|LTR|ERVL-MaLR	14682	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
194402	chr6	33009101	33009900	+	0	NA	promoter-TSS (NM_002119)	promoter-TSS (NM_002119)	91	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
90092	chr16	90031721	90032670	+	0	NA	intron (NM_001286209, intron 3 of 10)	intron (NM_001286209, intron 3 of 10)	-2294	NR_122031	750		NM_001214	ENSG00000221819	GAS8-AS1	C16orf3	GAS8 antisense RNA 1	ncRNA
39574	chr11	61142851	61143350	+	0	NA	intron (NM_017966, intron 1 of 4)	MIR|SINE|MIR	18326	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
227149	chr9	86311801	86312200	+	0	NA	intron (NM_024617, intron 17 of 26)	SVA_D|Retroposon|SVA	-29462	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
167043	chr3	126654551	126655250	+	0	NA	exon (NM_052883, exon 1 of 16)	exon (NM_052883, exon 1 of 16)	224	NM_052883	114112		NM_052883	ENSG00000197763	TXNRD3	TGR|TR2|TR2IT1|TRXR3|TXNR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1	thioredoxin reductase 3	protein-coding
119514	chr19	40528371	40528530	+	0	NA	intron (NM_020971, intron 17 of 35)	intron (NM_020971, intron 17 of 35)	-2041	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
159594	chr3	15107371	15107530	+	0	NA	Intergenic	MER84|LTR|ERV1	-8293	NR_126155	64145		NM_022340	ENSG00000131381	RBSN	Rabenosyn-5|ZFYVE20	rabenosyn, RAB effector	protein-coding
67621	chr14	72924871	72925180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1439	NM_001352448	26094		NM_015604	ENSG00000119599	DCAF4	WDR21|WDR21A	DDB1 and CUL4 associated factor 4	protein-coding
101466	chr17	67466321	67467230	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-4714	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
132435	chr2	105834701	105835380	+	0	NA	intron (NM_001004722, intron 2 of 3)	L1MA5|LINE|L1	-16807	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
226759	chr9	76417321	76417580	+	0	NA	Intergenic	Intergenic	18851	NR_026890	653162		NR_026890		RPSAP9	LAMR1P9|RPSA_20_986	ribosomal protein SA pseudogene 9	pseudo
148442	chr20	63977351	63978200	+	0	NA	intron (NM_080621, intron 1 of 4)	intron (NM_080621, intron 1 of 4)	1867	NM_080621	140700		NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
110297	chr19	1833971	1834430	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	12111	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
150217	chr21	39518301	39518500	+	0	NA	Intergenic	Intergenic	66430	NM_007341	6450		NM_007341	ENSG00000185437	SH3BGR	21-GARP	SH3 domain binding glutamate rich protein	protein-coding
25232	chr10	5971121	5972130	+	0	NA	intron (NM_001256765, intron 1 of 7)	L2c|LINE|L2	-2697	NM_001351096	3601		NM_002189	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor subunit alpha	protein-coding
238941	chrX	154810001	154810400	+	0	NA	Intergenic	Intergenic	-4673	NM_001166462	4354		NM_002436	ENSG00000130830	MPP1	AAG12|DXS552E|EMP55|MRG1|PEMP	MAGUK p55 scaffold protein 1	protein-coding
76545	chr15	75202601	75203880	+	0	NA	intron (NM_015492, intron 1 of 2)	intron (NM_015492, intron 1 of 2)	1358	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
211238	chr7	102647821	102648200	+	0	NA	intron (NM_032959, intron 4 of 8)	AluJb|SINE|Alu	-2315	NM_001166339	100310812		NM_001166339	ENSG00000173678	SPDYE2B	SPDYE2L	speedy/RINGO cell cycle regulator family member E2B	protein-coding
185191	chr5	119381701	119382200	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	25931	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
231822	chr9	132546371	132546730	+	0	NA	intron (NM_207417, intron 6 of 6)	intron (NM_207417, intron 6 of 6)	-36056	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
183960	chr5	88666821	88667680	+	0	NA	promoter-TSS (NR_030741)	promoter-TSS (NR_030741)	-311	NR_030741	407047		NR_030741	ENSG00000284447	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2	microRNA 9-2	ncRNA
174570	chr4	40230501	40231830	+	0	NA	intron (NM_001278360, intron 2 of 3)	intron (NM_001278360, intron 2 of 3)	34134	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
124692	chr2	3528051	3528730	+	0	NA	Intergenic	CpG	-8859	NM_018269	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
141781	chr2	242160001	242160300	+	0	NA	non-coding (NR_130699, exon 8 of 8)	non-coding (NR_130699, exon 8 of 8)	71517	NR_130699	728323		NR_024437		LINC01881	-	long intergenic non-protein coding RNA 1881	ncRNA
189288	chr5	172109121	172109630	+	0	NA	intron (NM_005990, intron 4 of 18)	AluJo|SINE|Alu	78849	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
7146	chr1	32213171	32214530	+	0	NA	TTS (NR_133635)	TTS (NR_133635)	4756	NM_001099434	149069		NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
118790	chr19	38401671	38402030	+	0	NA	Intergenic	Intergenic	-1285	NM_174905	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
158710	chr3	8324721	8325090	+	0	NA	intron (NR_033378, intron 3 of 3)	intron (NR_033378, intron 3 of 3)	176753	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
148711	chr21	6500671	6501280	+	0	NA	Intergenic	MER4C|LTR|ERV1	-1691	NM_001320651	102724594		NM_001320646	ENSG00000275895	LOC102724594	U2AF1L5	U2 small nuclear RNA auxiliary factor 1 like 5	protein-coding
118461	chr19	35879751	35880300	+	0	NA	TTS (NM_005166)	TTS (NM_005166)	11451	NM_001024807	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
83700	chr16	28485371	28485680	+	0	NA	intron (NM_001042432, intron 9 of 15)	AluSz|SINE|Alu	6549	NM_001286109	1201		NM_000086	ENSG00000188603	CLN3	BTN1|BTS|JNCL	CLN3 lysosomal/endosomal transmembrane protein, battenin	protein-coding
9014	chr1	44726971	44727700	+	0	NA	Intergenic	AluSx4|SINE|Alu	3833	NR_002755	26830		NR_002755	ENSG00000200169	RNU5D-1	RNU5D|U5DL|U5DS	RNA, U5D small nuclear 1	snRNA
210406	chr7	100013251	100013680	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-2087	NM_001346579	7586		NM_003439	ENSG00000106261	ZKSCAN1	KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
151780	chr22	18091471	18092440	+	0	NA	3' UTR (NM_001127649, exon 5 of 5)	3' UTR (NM_001127649, exon 5 of 5)	13965	NM_001127649	55670		NM_017929	ENSG00000215193	PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
172825	chr4	3079551	3080000	+	0	NA	intron (NM_002111, intron 1 of 66)	L2a|LINE|L2	5094	NM_002111	3064		NM_002111	ENSG00000197386	HTT	HD|IT15|LOMARS	huntingtin	protein-coding
47133	chr12	727771	727930	+	0	NA	Intergenic	Intergenic	-24729	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
38159	chr11	35759901	35760100	+	0	NA	intron (NM_017583, intron 4 of 4)	L1PA4|LINE|L1	97225	NM_017583	54765		NM_017583	ENSG00000166326	TRIM44	AN3|DIPB|HSA249128|MC7	tripartite motif containing 44	protein-coding
215585	chr7	158854921	158855180	+	0	NA	intron (NM_001350914, intron 1 of 24)	LTR8|LTR|ERV1	-1508	NM_018051	55112		NM_018051	ENSG00000126870	DYNC2I1	CFAP163|DIC6|FAP163|SRPS6|SRTD8|WDR60	dynein 2 intermediate chain 1	protein-coding
175728	chr4	77600371	77601130	+	0	NA	intron (NM_006419, intron 1 of 4)	intron (NM_006419, intron 1 of 4)	-5070	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
167376	chr3	128793601	128794000	+	0	NA	intron (NM_004637, intron 1 of 5)	OldhAT1|DNA|hAT-Ac	-53008	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
144333	chr20	34987871	34988030	+	0	NA	intron (NM_020884, intron 18 of 44)	intron (NM_020884, intron 18 of 44)	-2426	NR_030223	574501		NR_030223	ENSG00000207635	MIR499A	MIR499|MIRN499|hsa-mir-499a|mir-499a	microRNA 499a	ncRNA
158567	chr3	4512871	4513230	+	0	NA	intron (NM_002222, intron 2 of 57)	intron (NM_002222, intron 2 of 57)	19702	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
32537	chr10	103181321	103181580	+	0	NA	intron (NM_001351175, intron 1 of 19)	intron (NM_001351175, intron 1 of 19)	-4393	NM_001351189	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
82645	chr16	19119471	19119900	+	0	NA	non-coding (NR_028028, exon 2 of 2)	non-coding (NR_028028, exon 2 of 2)	5721	NM_001034841	162073		NM_001034841	ENSG00000205730	ITPRIPL2	D1C	ITPRIP like 2	protein-coding
53083	chr12	57735351	57736730	+	0	NA	intron (NM_014770, intron 1 of 17)	intron (NM_014770, intron 1 of 17)	2206	NM_001122772	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
17548	chr1	156799521	156799900	+	0	NA	intron (NM_005973, intron 6 of 6)	Tigger19b|DNA|TcMar-Tigger	-16040	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
111808	chr19	4469321	4469580	+	0	NA	Intergenic	AluJb|SINE|Alu	-2847	NM_001001520	84717		NM_032631	ENSG00000167674	HDGFL2	HDGF-2|HDGF2|HDGFRP2|HRP-2|HRP2	HDGF like 2	protein-coding
229256	chr9	116942051	116942150	+	0	NA	intron (NM_014010, intron 9 of 21)	(CA)n|Simple_repeat|Simple_repeat	239101	NR_003708	100124538		NR_003708	ENSG00000207268	SNORA70C	U70C	small nucleolar RNA, H/ACA box 70C	snoRNA
11190	chr1	87506771	87506930	+	0	NA	Intergenic	Intergenic	-135195	NR_038324	100505768		NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
75337	chr15	65384451	65386480	+	0	NA	intron (NM_020962, intron 18 of 19)	intron (NM_020962, intron 18 of 19)	-7463	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
16979	chr1	155966271	155967200	+	0	NA	intron (NM_004723, intron 3 of 21)	intron (NM_004723, intron 3 of 21)	11440	NM_001350111	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
86924	chr16	68087821	68088180	+	0	NA	intron (NM_173165, intron 1 of 9)	intron (NM_173165, intron 1 of 9)	2630	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
206181	chr7	28133821	28134080	+	0	NA	intron (NM_175061, intron 1 of 4)	L2a|LINE|L2	-46507	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
199657	chr6	122439751	122439850	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	32007	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
5719	chr1	26400051	26400680	+	0	NA	Intergenic	L2a|LINE|L2	-10452	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
105205	chr17	82323071	82323400	+	0	NA	intron (NM_003004, intron 3 of 4)	intron (NM_003004, intron 3 of 4)	-5627	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
53276	chr12	64147271	64147630	+	0	NA	3' UTR (NM_020762, exon 22 of 22)	3' UTR (NM_020762, exon 22 of 22)	74846	NM_152440	144577		NM_152440	ENSG00000174206	KICS2	C12orf66	KICSTOR subunit 2	protein-coding
197459	chr6	75241821	75242280	+	0	NA	intron (NM_001865, intron 2 of 4)	AluSp|SINE|Alu	1751	NM_001366293	1347		NM_001865	ENSG00000112695	COX7A2	COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL	cytochrome c oxidase subunit 7A2	protein-coding
207538	chr7	44823271	44824080	+	0	NA	Intergenic	Intergenic	24412	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
115813	chr19	16448971	16450380	+	0	NA	intron (NM_021235, intron 1 of 22)	L1MD1|LINE|L1	22295	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
11165	chr1	87045701	87046430	+	0	NA	intron (NM_001134492, intron 1 of 4)	intron (NM_001134492, intron 1 of 4)	-83700	NR_026988	339524		NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
155893	chr22	39528301	39528500	+	0	NA	TTS (NR_130151)	TTS (NR_130151)	4348	NR_130151	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
112484	chr19	6419351	6419650	+	0	NA	intron (NM_001366300, intron 6 of 19)	intron (NM_001366300, intron 6 of 19)	-2989	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
46863	chr11	133934971	133935730	+	0	NA	intron (NM_001277285, intron 7 of 19)	intron (NM_001277285, intron 7 of 19)	21618	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
199907	chr6	127868401	127868900	+	0	NA	intron (NM_001164687, intron 1 of 5).2	Charlie17a|DNA|hAT-Charlie	-13462	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
179350	chr4	183099871	183100030	+	0	NA	promoter-TSS (NR_024008)	promoter-TSS (NR_024008)	693	NM_024949	80014		NM_024949	ENSG00000151718	WWC2	BOMB	WW and C2 domain containing 2	protein-coding
233775	chrX	1420401	1420680	+	0	NA	intron (NM_001173473, intron 9 of 12).2	intron (NM_001173473, intron 9 of 12).2	20009	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
70411	chr14	102014401	102015030	+	0	NA	intron (NM_001376, intron 34 of 77)	intron (NM_001376, intron 34 of 77)	50142	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
86677	chr16	67505871	67506230	+	0	NA	Intergenic	AluYe5|SINE|Alu	-22503	NM_001138	181		NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related neuropeptide	protein-coding
98736	chr17	48028171	48028750	+	0	NA	intron (NM_016429, intron 8 of 8)	intron (NM_016429, intron 8 of 8)	-4422	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
106715	chr18	23480551	23480850	+	0	NA	intron (NR_145477, intron 12 of 12)	FLAM_C|SINE|Alu	-22770	NM_001276342	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
87331	chr16	70291051	70291700	+	0	NA	intron (NM_001257174, intron 1 of 9)	intron (NM_001257174, intron 1 of 9)	1608	NM_001257174	11269		NM_007242	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD-box helicase 19B	protein-coding
127670	chr2	43177851	43178150	+	0	NA	Intergenic	Intergenic	48606	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
177592	chr4	120749501	120749700	+	0	NA	intron (NM_001300824, intron 12 of 13)	L1MCc|LINE|L1	173126	NM_001379106	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
90322	chr17	1119771	1120300	+	0	NA	intron (NM_001322840, intron 2 of 22).2	FAM|SINE|Alu	6537	NM_001322840	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
227176	chr9	87497621	87497900	+	0	NA	promoter-TSS (NM_001288729)	promoter-TSS (NM_001288729)	26	NM_001288730	1612		NM_004938	ENSG00000196730	DAPK1	DAPK|ROCO3	death associated protein kinase 1	protein-coding
80546	chr16	2784571	2785950	+	0	NA	intron (NR_169625, intron 4 of 5)	CpG	2300	NM_001385462	260429		NM_152891	ENSG00000103355	PRSS33	EOS	serine protease 33	protein-coding
30221	chr10	74898051	74898900	+	0	NA	intron (NM_012330, intron 3 of 17).2	AluJo|SINE|Alu	-14311	NR_134476								
235086	chrX	40208751	40209050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-31571	NM_001123383	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
144039	chr20	33556451	33556550	+	0	NA	intron (NM_001032999, intron 1 of 10)	L1MC4|LINE|L1	-5865	NM_005093	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
44124	chr11	96074621	96075150	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-150778	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
79534	chr16	842021	842780	+	0	NA	Intergenic	Intergenic	36957	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
10662	chr1	70510121	70510530	+	0	NA	Intergenic	Intergenic	99057	NM_001902	1491		NM_001902	ENSG00000116761	CTH	CGL|CSE	cystathionine gamma-lyase	protein-coding
188767	chr5	157600621	157600880	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-24975	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
156979	chr22	42495451	42496250	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	-4729	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
183648	chr5	80252421	80252680	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	3498	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
58918	chr13	19743851	19744350	+	0	NA	intron (NM_001354909, intron 4 of 8)	AluSp|SINE|Alu	38845	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
191221	chr6	5693851	5693950	+	0	NA	intron (NR_110842, intron 2 of 3)	MLT1G3|LTR|ERVL-MaLR	1372	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
113997	chr19	10847071	10847630	+	0	NA	Intergenic	Intergenic	-1065	NM_001136482	255809		NM_001136482	ENSG00000214212	C19orf38	HIDE1	chromosome 19 open reading frame 38	protein-coding
37285	chr11	14702751	14703250	+	0	NA	intron (NM_001363569, intron 1 of 15)	HAL1|LINE|L1	59196	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
153917	chr22	30319151	30319680	+	0	NA	intron (NM_001204240, intron 1 of 8)	L2c|LINE|L2	7526	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
28732	chr10	61941321	61942000	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	39961	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
165512	chr3	100315171	100315330	+	0	NA	intron (NM_001199198, intron 15 of 18)	AluSp|SINE|Alu	-19507	NM_020202	56954		NM_020202	ENSG00000114021	NIT2	HEL-S-8a	nitrilase family member 2	protein-coding
134431	chr2	143131371	143131800	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	2166	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
209880	chr7	91264301	91265180	+	0	NA	5' UTR (NM_003505, exon 1 of 1)	5' UTR (NM_003505, exon 1 of 1)	307	NM_003505	8321		NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
174327	chr4	38670921	38671180	+	0	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-6422	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
213147	chr7	131506751	131507050	+	0	NA	intron (NM_005397, intron 4 of 7)	intron (NM_005397, intron 4 of 7)	49728	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
5300	chr1	25204671	25205330	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	27502	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
45464	chr11	118533051	118534280	+	0	NA	intron (NM_001318755, intron 5 of 8)	intron (NM_001318755, intron 5 of 8)	2473	NR_134852	84866		NM_032780	ENSG00000149582	TMEM25	-	transmembrane protein 25	protein-coding
3635	chr1	16384601	16384800	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	17458	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
103478	chr17	78350251	78350830	+	0	NA	Intergenic	Intergenic	9127	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
174243	chr4	37949451	37949550	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	-10898	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
13235	chr1	112679271	112679630	+	0	NA	intron (NM_001369507, intron 1 of 19)	intron (NM_001369507, intron 1 of 19)	4712	NM_001369507	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
164729	chr3	68972471	68972650	+	0	NA	Intergenic	Intergenic	-39950	NM_001005527	151647		NM_182522	ENSG00000163377	TAFA4	FAM19A4|TAFA-4	TAFA chemokine like family member 4	protein-coding
78923	chr15	101239601	101240800	+	0	NA	intron (NM_014918, intron 1 of 2)	intron (NM_014918, intron 1 of 2)	11848	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
31171	chr10	91163401	91165100	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	1238	NM_001257101	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
35179	chr11	782651	782950	+	0	NA	intron (NR_126342, intron 2 of 3)	intron (NR_126342, intron 2 of 3)	5222	NR_126342	171391		NM_138291	ENSG00000255284	GATD1-DT	NS3BP	GATD1 divergent transcript	ncRNA
236418	chrX	71282871	71284200	+	0	NA	promoter-TSS (NM_007363)	promoter-TSS (NM_007363)	-100	NM_001145409	4841		NM_007363	ENSG00000147140	NONO	MRXS34|NMT55|NRB54|P54|P54NRB|PPP1R114	non-POU domain containing octamer binding	protein-coding
20326	chr1	197706701	197706900	+	0	NA	intron (NR_125340, intron 3 of 19)	L1MA5|LINE|L1	68680	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
49016	chr12	14257671	14258900	+	0	NA	Intergenic	Intergenic	-107347	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
75906	chr15	70078971	70079330	+	0	NA	TTS (NR_030714)	TTS (NR_030714)	318	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
78892	chr15	100973521	100973780	+	0	NA	intron (NM_024652, intron 2 of 33)	CpG	54293	NM_024652	79705		NM_024652	ENSG00000154237	LRRK1	OSMD|RIPK6|Roco1	leucine rich repeat kinase 1	protein-coding
34146	chr10	128055321	128055780	+	0	NA	intron (NM_001323357, intron 3 of 16)	MER5A1|DNA|hAT-Charlie	6875	NR_136150	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
181580	chr5	43303921	43305150	+	0	NA	intron (NM_002130, intron 1 of 9)	intron (NM_002130, intron 1 of 9)	8646	NM_001330663	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
85492	chr16	50744901	50746080	+	0	NA	intron (NM_001378745, intron 3 of 18)	AluJo|SINE|Alu	3075	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
223925	chr9	515801	516150	+	0	NA	intron (NM_001354332, intron 1 of 11)	intron (NM_001354332, intron 1 of 11)	11280	NM_015158	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
194620	chr6	33563371	33563530	+	0	NA	Intergenic	AluSx|SINE|Alu	16826	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
202390	chr6	157836551	157836850	+	0	NA	intron (NM_016224, intron 1 of 17)	AluY|SINE|Alu	13454	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
86368	chr16	66554101	66554550	+	0	NA	intron (NM_001202509, intron 1 of 2)	L2a|LINE|L2	1749	NM_016951	51192		NM_016326	ENSG00000217555	CKLF	C32|CKLF1|CKLF2|CKLF3|CKLF4|HSPC224|UCK-1	chemokine like factor	protein-coding
188510	chr5	154944501	154944700	+	0	NA	intron (NM_001014990, intron 2 of 5)	L2a|LINE|L2	3527	NM_001014990	29093		NM_014180	ENSG00000082515	MRPL22	HSPC158|L22mt|MRP-L22|MRP-L25|RPML25|uL22m	mitochondrial ribosomal protein L22	protein-coding
31878	chr10	100228801	100230130	+	0	NA	exon (NM_001320928, exon 1 of 21)	exon (NM_001320928, exon 1 of 21)	131	NM_001278	1147		NM_001278	ENSG00000213341	CHUK	BPS2|IKBKA|IKK-1|IKK-alpha|IKK1|IKKA|NFKBIKA|TCF16	component of inhibitor of nuclear factor kappa B kinase complex	protein-coding
170829	chr3	190120321	190120950	+	0	NA	promoter-TSS (NR_126419)	promoter-TSS (NR_126419)	262	NM_018192	55214		NM_018192	ENSG00000090530	P3H2	LEPREL1|MCVD|MLAT4	prolyl 3-hydroxylase 2	protein-coding
236685	chrX	77693851	77694150	+	0	NA	intron (NM_000489, intron 5 of 34)	intron (NM_000489, intron 5 of 34)	92216	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
71720	chr15	20351651	20351950	+	0	NA	Intergenic	Intergenic	69056	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
172547	chr4	2393401	2394080	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	24905	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
181669	chr5	50434471	50434630	+	0	NA	intron (NM_198449, intron 1 of 8)	intron (NM_198449, intron 1 of 8)	6738	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
80742	chr16	3143971	3144130	+	0	NA	promoter-TSS (NR_132322)	promoter-TSS (NR_132322)	-241	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
76810	chr15	77038001	77038800	+	0	NA	TTS (NM_003978)	TTS (NM_003978)	32709	NM_005724	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
199422	chr6	116683821	116684650	+	0	NA	intron (NM_001366307, intron 2 of 14)	intron (NM_001366307, intron 2 of 14)	3024	NM_001366305	3841		NM_002269	ENSG00000196911	KPNA5	IPOA6|SRP6	karyopherin subunit alpha 5	protein-coding
111670	chr19	4254371	4255130	+	0	NA	intron (NM_018074, intron 4 of 7)	AluSz|SINE|Alu	7670	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
854	chr1	1613221	1613480	+	0	NA	Intergenic	AluSz|SINE|Alu	-2065	NM_001170688	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
16602	chr1	155062571	155063100	+	0	NA	promoter-TSS (NM_005227)	promoter-TSS (NM_005227)	-905	NM_182689	1945		NM_005227	ENSG00000243364	EFNA4	EFL4|EPLG4|LERK-4|LERK4	ephrin A4	protein-coding
17937	chr1	160336201	160336400	+	0	NA	intron (NM_001098398, intron 3 of 32)	AluSx|SINE|Alu	6950	NM_001098398	1314		NM_004371	ENSG00000122218	COPA	AILJK|HEP-COP|alpha-COP	COPI coat complex subunit alpha	protein-coding
214455	chr7	150321801	150322700	+	0	NA	promoter-TSS (NM_001363433)	promoter-TSS (NM_001363433)	-411	NM_001363433	65999		NM_023942	ENSG00000127399	LRRC61	HSPC295	leucine rich repeat containing 61	protein-coding
211176	chr7	102588821	102589100	+	0	NA	intron (NM_001079877, intron 16 of 19)	AluJr|SINE|Alu	-16339	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
95125	chr17	35007001	35007400	+	0	NA	non-coding (NR_037713, exon 7 of 7)	non-coding (NR_037713, exon 7 of 7)	26688	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
215053	chr7	152677301	152677500	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1259	NM_005431	7516		NM_005431	ENSG00000196584	XRCC2	FANCU|POF17|SPGF50	X-ray repair cross complementing 2	protein-coding
32948	chr10	110410901	110411100	+	0	NA	Intergenic	Intergenic	-86907	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
225333	chr9	34626721	34627230	+	0	NA	intron (NM_001017363, intron 1 of 6)	intron (NM_001017363, intron 1 of 6)	1111	NM_001017363	138715		NM_001017363	ENSG00000205143	ARID3C	-	AT-rich interaction domain 3C	protein-coding
98532	chr17	47653501	47653730	+	0	NA	intron (NM_002265, intron 3 of 21)	intron (NM_002265, intron 3 of 21)	2550	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
177796	chr4	123393871	123394550	+	0	NA	Intergenic	Intergenic	-2585	NM_001258038	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
71637	chr14	106761851	106762580	+	0	NA	Intergenic	Intergenic	88784	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
20113	chr1	192500871	192501230	+	0	NA	Intergenic	L1PA2|LINE|L1	-74723	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
7715	chr1	36095871	36096230	+	0	NA	3' UTR (NM_005202, exon 4 of 4)	3' UTR (NM_005202, exon 4 of 4)	7158	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
152473	chr22	20733121	20733380	+	0	NA	intron (NM_001362863, intron 34 of 53)	intron (NM_001362863, intron 34 of 53)	32136	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
81293	chr16	4680651	4681200	+	0	NA	intron (NM_001142290, intron 12 of 16)	intron (NM_001142290, intron 12 of 16)	9607	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
219362	chr8	70365801	70366280	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	37350	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
88585	chr16	85574851	85575150	+	0	NA	Intergenic	Intergenic	-36409	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
191433	chr6	10523951	10524050	+	0	NA	intron (NM_145649, intron 1 of 4)	intron (NM_145649, intron 1 of 4)	2649	NM_145649	2651		NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein-coding
788	chr1	1538351	1538650	+	0	NA	intron (NM_001114748, intron 2 of 3)	intron (NM_001114748, intron 2 of 3)	2124	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
165716	chr3	102375201	102375400	+	0	NA	Intergenic	Intergenic	-59715	NM_001329788	131368		NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida like domain containing 1	protein-coding
14673	chr1	145819501	145820300	+	0	NA	intron (NM_014455, intron 1 of 8)	AluSz|SINE|Alu	4195	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
48797	chr12	11902321	11902980	+	0	NA	Intergenic	Intergenic	-147211	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
94490	chr17	29284751	29285600	+	0	NA	intron (NM_020772, intron 2 of 3)	AluSg|SINE|Alu	8973	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
55872	chr12	109495071	109495230	+	0	NA	intron (NM_183415, intron 9 of 27)	intron (NM_183415, intron 9 of 27)	17516	NM_130466	89910		NM_130466	ENSG00000151148	UBE3B	BPIDS|KOS	ubiquitin protein ligase E3B	protein-coding
134223	chr2	134714251	134714580	+	0	NA	intron (NM_030923, intron 1 of 7)	intron (NM_030923, intron 1 of 7)	4585	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
63109	chr13	113314001	113314480	+	0	NA	intron (NM_005561, intron 4 of 8)	intron (NM_005561, intron 4 of 8)	17001	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
32771	chr10	104336871	104337100	+	0	NA	intron (NM_001272013, intron 1 of 1)	intron (NM_001272013, intron 1 of 1)	1480	NM_001272013	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
204349	chr7	2878721	2879330	+	0	NA	Intergenic	Intergenic	-34717	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
114271	chr19	11577201	11577400	+	0	NA	exon (NM_001111036, exon 3 of 6)	exon (NM_001111036, exon 3 of 6)	345	NM_001611	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
134347	chr2	136123421	136124330	+	0	NA	Intergenic	Intergenic	-5726	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
80308	chr16	2271301	2271500	+	0	NA	promoter-TSS (NR_030636)	promoter-TSS (NR_030636)	-347	NR_030636	100126328		NR_030636	ENSG00000284346	MIR940	MIRN940|hsa-mir-940|mir-940	microRNA 940	ncRNA
233466	chr9	137716001	137717380	+	0	NA	exon (NM_001354263, exon 3 of 27)	exon (NM_001354263, exon 3 of 27)	71716	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
222068	chr8	130323721	130324280	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-27467	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
67127	chr14	68608401	68608600	+	0	NA	intron (NM_001321809, intron 11 of 11)	intron (NM_001321809, intron 11 of 11)	20287	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
28536	chr10	50512871	50513480	+	0	NA	intron (NM_147156, intron 3 of 10)	intron (NM_147156, intron 3 of 10)	110781	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
4088	chr1	19156171	19156330	+	0	NA	intron (NM_020765, intron 42 of 105)	intron (NM_020765, intron 42 of 105)	54016	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
176100	chr4	83006201	83006600	+	0	NA	intron (NM_001115007, intron 1 of 12)	AluSc8|SINE|Alu	4423	NM_194282	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
33987	chr10	124669251	124669780	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-34513	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
43919	chr11	90218621	90219680	+	0	NA	intron (NM_001144073, intron 1 of 9)	AluSx|SINE|Alu	3899	NM_012124	26973		NM_012124	ENSG00000110172	CHORDC1	CHP1	cysteine and histidine rich domain containing 1	protein-coding
202529	chr6	158621751	158622050	+	0	NA	intron (NR_164859, intron 10 of 16)	intron (NR_164859, intron 10 of 16)	12193	NR_106981	102465694		NR_106981	ENSG00000278571	MIR7161	hsa-mir-7161	microRNA 7161	ncRNA
94465	chr17	29262501	29262700	+	0	NA	3' UTR (NM_020772, exon 4 of 4)	3' UTR (NM_020772, exon 4 of 4)	15741	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
132527	chr2	106144601	106145200	+	0	NA	intron (NR_165308, intron 6 of 14)	MLT1A0|LTR|ERVL-MaLR	-6019	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
72120	chr15	28954701	28955850	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	21271	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
99894	chr17	56831021	56831480	+	0	NA	intron (NM_001085430, intron 2 of 7)	L2b|LINE|L2	2670	NM_001085430	339210		NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
200847	chr6	138403501	138405300	+	0	NA	5' UTR (NM_001326381, exon 1 of 4)	5' UTR (NM_001326381, exon 1 of 4)	177	NM_014320	23593		NM_014320	ENSG00000051620	HEBP2	C6ORF34B|C6orf34|PP23|SOUL	heme binding protein 2	protein-coding
130849	chr2	87314671	87314900	+	0	NA	Intergenic	Intergenic	119999	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
6057	chr1	27139151	27139450	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	15825	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
17455	chr1	156695271	156696030	+	0	NA	Intergenic	AluSg|SINE|Alu	9933	NM_001878	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
17306	chr1	156450751	156451050	+	0	NA	Intergenic	Intergenic	-21352	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
68428	chr14	81220501	81222180	+	0	NA	promoter-TSS (NM_201595)	promoter-TSS (NM_201595)	50	NM_201595	2957		NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding
205445	chr7	17030521	17030780	+	0	NA	Intergenic	Intergenic	-148667	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
74642	chr15	60840051	60841580	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	159246	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
204043	chr7	1939801	1941100	+	0	NA	5' UTR (NM_001304525, exon 1 of 4)	5' UTR (NM_001304525, exon 1 of 4)	121	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
59800	chr13	30370471	30370900	+	0	NA	intron (NR_024464, intron 2 of 4)	intron (NR_024464, intron 2 of 4)	3229	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
233498	chr9	138220851	138221830	+	0	NA	intron (NR_146178, intron 4 of 14)	intron (NR_146178, intron 4 of 14)	4484	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
222096	chr8	130444671	130445680	+	0	NA	Intergenic	L2a|LINE|L2	-1501	NM_001362925	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
125932	chr2	25160171	25160400	+	0	NA	TTS (NM_001319205)	TTS (NM_001319205)	8295	NM_000939	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
119963	chr19	41889971	41890630	+	0	NA	intron (NM_198977, intron 4 of 27)	AluJb|SINE|Alu	5857	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
132370	chr2	105763271	105763430	+	0	NA	intron (NM_001004722, intron 1 of 3)	MamRTE1|LINE|RTE-BovB	18287	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
200525	chr6	136230121	136230650	+	0	NA	TTS (NM_001099286)	TTS (NM_001099286)	19926	NM_001318738	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
213072	chr7	131080471	131081080	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	26255	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
39436	chr11	60915301	60916130	+	0	NA	intron (NM_024092, intron 1 of 3)	intron (NM_024092, intron 1 of 3)	1557	NM_024092	79073		NM_024092	ENSG00000110108	TMEM109	SND3|hSND3	transmembrane protein 109	protein-coding
132845	chr2	110827371	110827850	+	0	NA	intron (NM_001371254, intron 9 of 18)	intron (NM_001371254, intron 9 of 18)	95037	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
58852	chr12	132954351	132954900	+	0	NA	intron (NM_183238, intron 1 of 4)	intron (NM_183238, intron 1 of 4)	1681	NM_183238	100289635		NM_183238	ENSG00000196458	ZNF605	-	zinc finger protein 605	protein-coding
166206	chr3	111978421	111980230	+	0	NA	intron (NR_073571, intron 1 of 2)	intron (NR_073571, intron 1 of 2)	299	NM_018394	55347		NM_018394	ENSG00000144827	ABHD10	-	abhydrolase domain containing 10, depalmitoylase	protein-coding
59461	chr13	26011871	26013050	+	0	NA	intron (NM_016529, intron 35 of 36)	CpG	39556	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
179665	chr4	189945301	189945500	+	0	NA	intron (NM_004477, intron 2 of 8)	L1MEc|LINE|L1	4528	NM_004477	2483		NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
89021	chr16	88238871	88239080	+	0	NA	Intergenic	Intergenic	44694	NR_110944	101928880		NR_110944	ENSG00000260420	LINC02182	LA16c-444G7.2	long intergenic non-protein coding RNA 2182	ncRNA
148832	chr21	8392371	8393500	+	0	NA	non-coding (NR_003286, exon 1 of 1).2	non-coding (NR_003286, exon 1 of 1).2	269	NR_146152	109910380		NR_146152		RNA18SN3	-	RNA, 18S ribosomal N3	rRNA
47705	chr12	6444601	6445480	+	0	NA	promoter-TSS (NM_001242)	promoter-TSS (NM_001242)	85	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
54404	chr12	90013271	90013700	+	0	NA	Intergenic	Intergenic	65792	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
102544	chr17	75835121	75836480	+	0	NA	intron (NM_199242, intron 18 of 31)	intron (NM_199242, intron 18 of 31)	8604	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
127808	chr2	44581001	44581200	+	0	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	219153	NM_024766	79823		NM_024766	ENSG00000143919	CAMKMT	C2orf34|CLNMT|CaM KMT|Cam|KMT	calmodulin-lysine N-methyltransferase	protein-coding
12790	chr1	109776651	109777350	+	0	NA	Intergenic	Intergenic	-13077	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
110246	chr19	1782551	1783050	+	0	NA	non-coding (NR_047593, exon 29 of 29)	non-coding (NR_047593, exon 29 of 29)	29294	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
35867	chr11	2383151	2383700	+	0	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-5433	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
179801	chr5	395071	395230	+	0	NA	intron (NR_165159, intron 6 of 13)	intron (NR_165159, intron 6 of 13)	48010	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
165133	chr3	71728551	71729300	+	0	NA	intron (NM_173359, intron 1 of 7)	MIR3|SINE|MIR	193	NM_001134650	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
230824	chr9	129058271	129058430	+	0	NA	intron (NR_138421, intron 7 of 16)	AluJb|SINE|Alu	21416	NM_032809	84895		NM_032809	ENSG00000148343	MIGA2	C9orf54|FAM73B	mitoguardin 2	protein-coding
225039	chr9	33155621	33156280	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-10998	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
103795	chr17	79045751	79046400	+	0	NA	intron (NR_049769, intron 2 of 3)	intron (NR_049769, intron 2 of 3)	11776	NM_198593	114897		NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and TNF related 1	protein-coding
215359	chr7	157388201	157388400	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	51296	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
87639	chr16	74557171	74557700	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	49679	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
42366	chr11	68692351	68692650	+	0	NA	Intergenic	AluY|SINE|Alu	7956	NM_015973	51083		NM_015973	ENSG00000069482	GAL	ETL8|GAL-GMAP|GALN|GLNN|GMAP	galanin and GMAP prepropeptide	protein-coding
177768	chr4	122712721	122713030	+	0	NA	Intergenic	Ricksha_c|DNA|MULE-MuDR	19583	NR_024041	729338		NR_024041		CETN4P	-	centrin 4, pseudogene	pseudo
135748	chr2	169563851	169564430	+	0	NA	intron (NM_001322048, intron 2 of 13)	L1ME3A|LINE|L1	9725	NM_024622	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
40803	chr11	64907551	64908100	+	0	NA	exon (NM_001367972, exon 17 of 41)	exon (NM_001367972, exon 17 of 41)	-5370	NR_106807	102466727		NR_106807	ENSG00000274314	MIR6749	hsa-mir-6749	microRNA 6749	ncRNA
129761	chr2	71023371	71023950	+	0	NA	promoter-TSS (NR_002185)	promoter-TSS (NR_002185)	-415	NR_002185	79315		NR_002185	ENSG00000290930	OR7E91P	-	olfactory receptor family 7 subfamily E member 91 pseudogene	pseudo
183305	chr5	76607351	76607700	+	0	NA	non-coding (NR_134278, exon 2 of 2)	non-coding (NR_134278, exon 2 of 2)	1444	NR_134278	101929109		NR_134278	ENSG00000249713	LOC101929109	-	uncharacterized LOC101929109	ncRNA
147983	chr20	62999301	62999900	+	0	NA	Intergenic	Intergenic	7364	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
67099	chr14	68287151	68287250	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	341587	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
129490	chr2	69616671	69617450	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	26678	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
12765	chr1	109636151	109636650	+	0	NA	Intergenic	Intergenic	12412	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
113979	chr19	10819851	10820830	+	0	NA	intron (NM_001005362, intron 15 of 19)	L2a|LINE|L2	-2844	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
147212	chr20	57383571	57384130	+	0	NA	TTS (NR_149006)	TTS (NR_149006)	-7546	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
104324	chr17	80951301	80951500	+	0	NA	intron (NM_020761, intron 28 of 33)	intron (NM_020761, intron 28 of 33)	19813	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
156997	chr22	42509651	42510850	+	0	NA	3' UTR (NM_015703, exon 7 of 7)	3' UTR (NM_015703, exon 7 of 7)	9546	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
116917	chr19	18792901	18793100	+	0	NA	Intergenic	Intergenic	-1695	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
13058	chr1	111451871	111452030	+	0	NA	intron (NM_001688, intron 2 of 6)	AluJr|SINE|Alu	2486	NM_001688	515		NM_001688	ENSG00000116459	ATP5PB	ATP5F1|PIG47	ATP synthase peripheral stalk-membrane subunit b	protein-coding
22198	chr1	212432321	212433600	+	0	NA	promoter-TSS (NM_013349)	promoter-TSS (NM_013349)	40	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
172568	chr4	2425871	2426230	+	0	NA	intron (NM_001193282, intron 1 of 15)	intron (NM_001193282, intron 1 of 15)	7095	NM_001193282	402160		NM_001193282	ENSG00000206113	CFAP99	-	cilia and flagella associated protein 99	protein-coding
221888	chr8	128556601	128557530	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	7614	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
24581	chr1	245156251	245157000	+	0	NA	exon (NM_018012, exon 2 of 15)	exon (NM_018012, exon 2 of 15)	1640	NM_018012	55083		NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
111999	chr19	4970021	4970780	+	0	NA	intron (NM_001370093, intron 1 of 11)	intron (NM_001370093, intron 1 of 11)	1287	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
151919	chr22	19027871	19028430	+	0	NA	intron (NR_110533, intron 5 of 5)	intron (NR_110533, intron 5 of 5)	5526	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
89856	chr16	89604851	89605230	+	0	NA	Intergenic	Intergenic	-8268	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
145070	chr20	38550301	38550550	+	0	NA	intron (NM_020336, intron 20 of 29)	intron (NM_020336, intron 20 of 29)	-30772	NR_130907								
169709	chr3	172108401	172109080	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	68209	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
5913	chr1	26836301	26836500	+	0	NA	intron (NM_032283, intron 2 of 7)	intron (NM_032283, intron 2 of 7)	9712	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
106154	chr18	9913401	9914600	+	0	NA	promoter-TSS (NM_003574)	promoter-TSS (NM_003574)	-16	NM_003574	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
53044	chr12	57618351	57618650	+	0	NA	TTS (NR_120450)	TTS (NR_120450)	-1027	NR_166678	65012		NM_133489	ENSG00000293429	SLC26A10P	SLC26A10	solute carrier family 26 member 10, pseudogene	pseudo
164538	chr3	63948501	63948700	+	0	NA	intron (NM_001177387, intron 3 of 12)	intron (NM_001177387, intron 3 of 12)	-19194	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
50190	chr12	46179171	46179430	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	87216	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
179307	chr4	177393121	177393730	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	49012	NM_000027	175		NM_000027	ENSG00000038002	AGA	AGU|ASRG|GA	aspartylglucosaminidase	protein-coding
199950	chr6	127917101	127917650	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	1256	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
130876	chr2	87411951	87412630	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-43137	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
56733	chr12	120126951	120127250	+	0	NA	TTS (NM_006836)	TTS (NM_006836)	-10347	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
85965	chr16	57289601	57290200	+	0	NA	Intergenic	Intergenic	-5228	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
107744	chr18	50284971	50285130	+	0	NA	exon (NM_014593, exon 7 of 15)	exon (NM_014593, exon 7 of 15)	3272	NM_014593	30827		NM_014593	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
162372	chr3	47932621	47932880	+	0	NA	intron (NM_001385676, intron 2 of 15)	FAM|SINE|Alu	83195	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
86878	chr16	67977001	67977400	+	0	NA	intron (NM_001370198, intron 7 of 9)	intron (NM_001370198, intron 7 of 9)	3299	NM_001370198	64180		NM_022357	ENSG00000141096	DPEP3	MBD3	dipeptidase 3	protein-coding
31368	chr10	93703951	93704130	+	0	NA	Intergenic	MIRb|SINE|MIR	-1081	NM_001347714	118924		NM_145246	ENSG00000148690	FRA10AC1	C10orf4|F26C11.1-like|FRA10A|NEDGFC	FRA10A associated CGG repeat 1	protein-coding
53552	chr12	67515451	67516780	+	0	NA	Intergenic	Intergenic	-3967	NR_103861	100507175		NR_103861	ENSG00000203585	LINC02408	-	long intergenic non-protein coding RNA 2408	ncRNA
212451	chr7	128412371	128413230	+	0	NA	Intergenic	AluY|SINE|Alu	-2818	NM_183243	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
222404	chr8	134317721	134317980	+	0	NA	Intergenic	Intergenic	-280221	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
8135	chr1	39270971	39271330	+	0	NA	intron (NM_012090, intron 5 of 92)	MSTA|LTR|ERVL-MaLR	-137923	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
158989	chr3	10286751	10287350	+	0	NA	intron (NM_001134946, intron 1 of 2)	intron (NM_001134946, intron 1 of 2)	2631	NR_026829	84657		NM_032570	ENSG00000231177	LINC00852	C3orf42|GHRL-AS2|GHRLOS2|NAG73	long intergenic non-protein coding RNA 852	ncRNA
204376	chr7	2978171	2979380	+	0	NA	intron (NM_032415, intron 1 of 24)	intron (NM_032415, intron 1 of 24)	65092	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
228818	chr9	111986651	111987050	+	0	NA	Intergenic	Intergenic	54750	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
22891	chr1	225844771	225845230	+	0	NA	TTS (NM_014698)	TTS (NM_014698)	19646	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
187473	chr5	142140301	142140500	+	0	NA	intron (NM_030571, intron 5 of 7)	AluSp|SINE|Alu	31621	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
22405	chr1	219961751	219962250	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-2902	NM_001376929	55532		NM_018713	ENSG00000196660	SLC30A10	HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10	solute carrier family 30 member 10	protein-coding
72731	chr15	38697451	38697550	+	0	NA	intron (NR_160786, intron 1 of 1)	MLT1E2|LTR|ERVL-MaLR	902	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
63936	chr14	22052151	22052780	+	0	NA	Intergenic	Intergenic	380288	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
21433	chr1	205354301	205354580	+	0	NA	intron (NM_001271863, intron 2 of 8)	intron (NM_001271863, intron 2 of 8)	2482	NM_018203	55220		NM_018203	ENSG00000162873	KLHDC8A	-	kelch domain containing 8A	protein-coding
199600	chr6	119261971	119262130	+	0	NA	intron (NM_005907, intron 5 of 12)	L3|LINE|CR1	87711	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
50165	chr12	45974071	45974430	+	0	NA	intron (NM_004719, intron 1 of 14)	Tigger1|DNA|TcMar-Tigger	16324	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
213168	chr7	132394301	132394800	+	0	NA	intron (NM_001105543, intron 3 of 3)	MIR3|SINE|MIR	133689	NR_134565	101928807		NR_134565		LOC101928807	-	uncharacterized LOC101928807	ncRNA
155071	chr22	37545171	37546300	+	0	NA	Intergenic	Intergenic	-14745	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
86171	chr16	57802221	57803550	+	0	NA	promoter-TSS (NM_001130100)	promoter-TSS (NM_001130100)	368	NM_001318710	3801		NM_005550	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
85990	chr16	57448551	57448650	+	0	NA	intron (NM_020312, intron 1 of 8)	AluSz|SINE|Alu	-1072	NM_001308347	57019		NM_020313	ENSG00000005194	CIAPIN1	Anamorsin|CIAE2|DRE2|PRO0915	cytokine induced apoptosis inhibitor 1	protein-coding
101775	chr17	73156151	73156900	+	0	NA	Intergenic	Intergenic	-8485	NM_001050	6752		NM_001050	ENSG00000180616	SSTR2	SST2	somatostatin receptor 2	protein-coding
900	chr1	1679971	1680130	+	0	NA	intron (NM_001110781, intron 1 of 8)	AluSp|SINE|Alu	12745	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
91598	chr17	5281651	5283480	+	0	NA	intron (NM_001291581, intron 1 of 16)	CpG	281	NM_001083585	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
181856	chr5	53180571	53180830	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	70858	NR_104654	257396		NR_034107	ENSG00000247796	MOCS2-DT	-	MOCS2 divergent transcript	ncRNA
107643	chr18	48971371	48971730	+	0	NA	Intergenic	L1ME3A|LINE|L1	-20839	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
183667	chr5	80481321	80481650	+	0	NA	non-coding (NR_146173, exon 20 of 20)	non-coding (NR_146173, exon 20 of 20)	-6615	NM_205548	167555		NM_205548	ENSG00000152380	FAM151B	UNQ9217	family with sequence similarity 151 member B	protein-coding
4679	chr1	22641951	22642330	+	0	NA	Intergenic	Intergenic	-1493	NM_172369	714		NM_172369	ENSG00000159189	C1QC	C1Q-C|C1QD3|C1QG	complement C1q C chain	protein-coding
188748	chr5	157557021	157557280	+	0	NA	intron (NM_033274, intron 3 of 22)	AluJb|SINE|Alu	18625	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
186024	chr5	133998521	133998930	+	0	NA	intron (NM_003374, intron 1 of 8)	intron (NM_003374, intron 1 of 8)	6043	NR_036624								
211092	chr7	102492951	102494100	+	0	NA	intron (NM_001367767, intron 15 of 20)	intron (NM_001367767, intron 15 of 20)	-14603	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
209556	chr7	77330351	77331100	+	0	NA	intron (NM_001350897, intron 18 of 29)	intron (NM_001350897, intron 18 of 29)	-84473	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
97140	chr17	42554141	42555200	+	0	NA	exon (NM_000413, exon 6 of 6)	exon (NM_000413, exon 6 of 6)	132	NR_144402	108783654		NR_144402	ENSG00000266962	HSD17B1-AS1	-	HSD17B1 antisense RNA 1	ncRNA
49193	chr12	15584501	15584730	+	0	NA	intron (NM_030671, intron 11 of 13)	intron (NM_030671, intron 11 of 13)	38004	NM_030668	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
68646	chr14	89946551	89946850	+	0	NA	intron (NM_145231, intron 3 of 5)	AluJr|SINE|Alu	7836	NM_001284268	90141		NM_145231	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
13126	chr1	111644551	111644850	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-20094	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
31677	chr10	97434551	97434900	+	0	NA	Intergenic	AluJr|SINE|Alu	7048	NM_001317079	5223		NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
231478	chr9	131359551	131359650	+	0	NA	Intergenic	AluJo|SINE|Alu	-14051	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
238675	chrX	154039501	154039700	+	0	NA	intron (NM_001110792, intron 1 of 2)	AluSz6|SINE|Alu	-19611	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
125505	chr2	12710401	12710700	+	0	NA	Intergenic	Intergenic	-6322	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
227238	chr9	89310021	89311650	+	0	NA	promoter-TSS (NM_001827)	promoter-TSS (NM_001827)	-360	NM_001827	1164		NM_001827	ENSG00000123975	CKS2	CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding
196504	chr6	43668271	43668930	+	0	NA	intron (NM_001193341, intron 5 of 5)	intron (NM_001193341, intron 5 of 5)	19191	NM_018135	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
211149	chr7	102564351	102564850	+	0	NA	intron (NM_001097615, intron 4 of 8)	FRAM|SINE|Alu	8021	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
45297	chr11	118142571	118143180	+	0	NA	intron (NM_001142348, intron 1 of 2)	intron (NM_001142348, intron 1 of 2)	2558	NR_024527	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
112275	chr19	5807171	5807700	+	0	NA	intron (NM_004558, intron 1 of 2)	intron (NM_004558, intron 1 of 2)	2368	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
949	chr1	1743321	1744490	+	0	NA	intron (NM_182838, intron 1 of 5)	AluSx1|SINE|Alu	2094	NM_182838	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
120486	chr19	44755301	44755500	+	0	NA	intron (NM_005178, intron 2 of 8)	LTR16A|LTR|ERVL	-3257	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
239443	chrY	56707801	56708150	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-246280	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
62782	chr13	108496551	108496650	+	0	NA	Intergenic	CpG	-99305	NM_015011	23026		NM_015011	ENSG00000041515	MYO16	MYAP3|MYR8|Myo16b|NYAP3|PPP1R107	myosin XVI	protein-coding
134841	chr2	148651851	148652150	+	0	NA	intron (NM_015630, intron 1 of 13)	MIR3|SINE|MIR	7249	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
168095	chr3	138331001	138331730	+	0	NA	Intergenic	Intergenic	-1514	NM_001349024	347736		NM_178130	ENSG00000181322	NME9	NM23-H9|NXL2|TXL-2|TXL2|TXNDC6	NME/NM23 family member 9	protein-coding
113946	chr19	10754871	10755830	+	0	NA	intron (NM_001005362, intron 1 of 19)	intron (NM_001005362, intron 1 of 19)	-24904	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
44748	chr11	112000651	112000830	+	0	NA	intron (NM_033425, intron 13 of 15)	L1MB5|LINE|L1	23431	NM_033425	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
64659	chr14	31556851	31557480	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-4239	NM_025152	80224		NM_025152	ENSG00000151413	NUBPL	C14orf127|IND1|MC1DN21|huInd1	NUBP iron-sulfur cluster assembly factor, mitochondrial	protein-coding
40071	chr11	62761251	62762330	+	0	NA	intron (NM_002696, intron 1 of 7)	CpG	210	NM_002696	5436		NM_002696	ENSG00000168002	POLR2G	RPB19|RPB7|hRPB19|hsRPB7	RNA polymerase II subunit G	protein-coding
105182	chr17	82289951	82290250	+	0	NA	TTS (NR_135639)	TTS (NR_135639)	2714	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
46425	chr11	126535951	126536050	+	0	NA	intron (NM_001161707, intron 2 of 13)	intron (NM_001161707, intron 2 of 13)	-116778	NR_120532	101929427		NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
32251	chr10	101875071	101875430	+	0	NA	intron (NM_024541, intron 24 of 25)	intron (NM_024541, intron 24 of 25)	-31330	NM_173197	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
46373	chr11	126264101	126264300	+	0	NA	exon (NM_003139, exon 13 of 14)	exon (NM_003139, exon 13 of 14)	4695	NM_003139	6734		NM_003139	ENSG00000182934	SRPRA	DP|SRPR|Sralpha	SRP receptor subunit alpha	protein-coding
169631	chr3	171294221	171294480	+	0	NA	intron (NM_001161560, intron 2 of 31)	AluJr|SINE|Alu	166055	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
93832	chr17	20903771	20903930	+	0	NA	non-coding (NR_104185, exon 3 of 3)	non-coding (NR_104185, exon 3 of 3)	-7687	NR_164128	339184		NM_001004306	ENSG00000291074	CCDC144NL	-	CCDC144A N-terminal like (pseudogene)	pseudo
175539	chr4	74624821	74625150	+	0	NA	Intergenic	Intergenic	169538	NM_001316963	685		NM_001729	ENSG00000174808	BTC	-	betacellulin	protein-coding
92352	chr17	8181921	8182730	+	0	NA	Intergenic	AluSg|SINE|Alu	-4620	NR_039746	100616406		NR_039746	ENSG00000283160	MIR4521	mir-4521	microRNA 4521	ncRNA
186942	chr5	139646121	139646380	+	0	NA	Intergenic	Intergenic	-1049	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
194927	chr6	35047121	35047380	+	0	NA	intron (NM_015245, intron 11 of 23)	intron (NM_015245, intron 11 of 23)	94089	NM_001366324	6954		NM_018679	ENSG00000124678	TCP11	D6S230E|FPPR	t-complex 11	protein-coding
141302	chr2	240438071	240438950	+	0	NA	intron (NM_002081, intron 1 of 8)	intron (NM_002081, intron 1 of 8)	2847	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
67329	chr14	69635151	69635670	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	23814	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
31924	chr10	100527151	100527450	+	0	NA	intron (NM_001284368, intron 2 of 4)	intron (NM_001284368, intron 2 of 4)	2571	NM_005004	4714		NM_005004	ENSG00000166136	NDUFB8	ASHI|CI-ASHI|MC1DN32	NADH:ubiquinone oxidoreductase subunit B8	protein-coding
735	chr1	1469401	1469850	+	0	NA	3' UTR (NM_001039211, exon 12 of 12)	3' UTR (NM_001039211, exon 12 of 12)	-2140	NM_031921	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
103822	chr17	79103851	79104450	+	0	NA	intron (NM_001082575, intron 6 of 14)	intron (NM_001082575, intron 6 of 14)	29326	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
83885	chr16	28949251	28949580	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1582	NM_032815	84901		NM_032815	ENSG00000176953	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T cells 2 interacting protein	protein-coding
158548	chr3	4303021	4304480	+	0	NA	intron (NM_001320678, intron 1 of 1)	intron (NM_001320678, intron 1 of 1)	446	NM_006515	6419		NM_006515	ENSG00000170364	SETMAR	METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
207729	chr7	48046221	48046880	+	0	NA	exon (NM_001100159, exon 5 of 9)	exon (NM_001100159, exon 5 of 9)	11007	NM_001267866	136288		NM_001100159	ENSG00000164746	C7orf57	-	chromosome 7 open reading frame 57	protein-coding
200341	chr6	133965651	133966330	+	0	NA	intron (NM_004865, intron 1 of 6)	MIR|SINE|MIR	12766	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
63307	chr13	113991851	113992450	+	0	NA	intron (NM_001320822, intron 22 of 23).2	intron (NM_001320822, intron 22 of 23).2	-18074	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
137727	chr2	197777821	197778250	+	0	NA	intron (NM_001284362, intron 3 of 10)	intron (NM_001284362, intron 3 of 10)	7284	NM_001284361	66037		NM_033030	ENSG00000152430	BOLL	BOULE	boule homolog, RNA binding protein	protein-coding
110279	chr19	1819521	1820350	+	0	NA	exon (NM_020695, exon 7 of 16)	exon (NM_020695, exon 7 of 16)	-2154	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
208171	chr7	64685271	64685430	+	0	NA	non-coding (NR_104149, exon 3 of 3)	non-coding (NR_104149, exon 3 of 3)	6286	NR_106898	102465505		NR_106898	ENSG00000275667	MIR6839	hsa-mir-6839	microRNA 6839	ncRNA
222172	chr8	132920871	132921300	+	0	NA	intron (NM_003235, intron 21 of 47)	MLT1A|LTR|ERVL-MaLR	54127	NM_003235	7038		NM_003235	ENSG00000042832	TG	AITD3|TGN	thyroglobulin	protein-coding
193041	chr6	28537121	28538200	+	0	NA	Intergenic	tRNA-Ile-ATA|tRNA|tRNA	9329	NR_144470	2880		NM_001509	ENSG00000224586	GPX5	EGLP|GPx-5|GSHPx-5|HEL-S-75p	glutathione peroxidase 5	protein-coding
172596	chr4	2483951	2484400	+	0	NA	intron (NM_001185009, intron 2 of 8)	intron (NM_001185009, intron 2 of 8)	14722	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
143611	chr20	31718451	31718750	+	0	NA	intron (NR_134257, intron 1 of 2)	AluSp|SINE|Alu	-2907	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
41946	chr11	67310021	67311000	+	0	NA	intron (NM_017857, intron 13 of 13)	intron (NM_017857, intron 13 of 13)	6980	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
170410	chr3	185561171	185561930	+	0	NA	Intergenic	Intergenic	-8962	NM_139248	200879		NM_139248	ENSG00000163898	LIPH	AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1	lipase H	protein-coding
76458	chr15	74839801	74840800	+	0	NA	TTS (NR_106942)	TTS (NR_106942)	407	NR_106942	102465531		NR_106942	ENSG00000275411	MIR6882	hsa-mir-6882	microRNA 6882	ncRNA
73796	chr15	48285801	48286080	+	0	NA	intron (NM_000338, intron 21 of 26)	intron (NM_000338, intron 21 of 26)	-45155	NM_001330286	1854		NM_001948	ENSG00000128951	DUT	BMFDMS|dUTPase	deoxyuridine triphosphatase	protein-coding
44971	chr11	116855271	116855950	+	0	NA	non-coding (NR_126362, exon 2 of 2)	non-coding (NR_126362, exon 2 of 2)	-17660	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
62991	chr13	112308021	112308280	+	0	NA	Intergenic	Intergenic	-5317	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
77594	chr15	85250921	85251180	+	0	NA	Intergenic	Intergenic	10699	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
79476	chr16	754621	755080	+	0	NA	Intergenic	L1MB4|LINE|L1	-5884	NM_005823	10232		NM_005823	ENSG00000102854	MSLN	MPF|SMRP	mesothelin	protein-coding
23836	chr1	234605951	234606500	+	0	NA	3' UTR (NM_001077397, exon 2 of 2)	3' UTR (NM_001077397, exon 2 of 2)	3300	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
22356	chr1	214638501	214639080	+	0	NA	intron (NM_016343, intron 11 of 19)	AluYh3|SINE|Alu	35595	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
111124	chr19	3229571	3229930	+	0	NA	intron (NR_033342, intron 1 of 12)	intron (NR_033342, intron 1 of 12)	4472	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
127977	chr2	46876801	46877300	+	0	NA	Intergenic	Intergenic	38756	NM_001171509	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
196165	chr6	42562101	42562300	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1822	NM_015255	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
44302	chr11	102347901	102348580	+	0	NA	intron (NM_001256163, intron 1 of 8)	intron (NM_001256163, intron 1 of 8)	866	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
125164	chr2	10040651	10041200	+	0	NA	TTS (NR_135558)	TTS (NR_135558)	2476	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
51662	chr12	53057401	53057980	+	0	NA	TTS (NR_106815)	TTS (NR_106815)	746	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
150854	chr21	44079271	44079430	+	0	NA	intron (NM_003274, intron 11 of 22)	intron (NM_003274, intron 11 of 22)	5026	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
90104	chr16	90050801	90051250	+	0	NA	Intergenic	MER67B|LTR|ERV1	-3242	NR_027336	100130015		NR_027335	ENSG00000290738	URAHP	URAH	urate (hydroxyiso-) hydrolase, pseudogene	pseudo
113690	chr19	10406851	10407530	+	0	NA	Intergenic	L2a|LINE|L2	-3648	NM_007065	11140		NM_007065	ENSG00000105401	CDC37	P50CDC37	cell division cycle 37, HSP90 cochaperone	protein-coding
153610	chr22	27903471	27904200	+	0	NA	intron (NM_001284278, intron 3 of 11)	L1MB7|LINE|L1	15379	NM_001284278	23760		NM_012399	ENSG00000180957	PITPNB	PI-TP-beta|PtdInsTP|VIB1B	phosphatidylinositol transfer protein beta	protein-coding
89391	chr16	88808451	88808550	+	0	NA	TTS (NM_000485)	TTS (NM_000485)	3428	NM_000485	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
69487	chr14	95494351	95494850	+	0	NA	intron (NM_001384283, intron 1 of 9)	L2b|LINE|L2	5940	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
213196	chr7	132519651	132519950	+	0	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	56670	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
117724	chr19	29526251	29527630	+	0	NA	intron (NM_001146339, intron 1 of 4)	CpG	946	NM_001384640	342865		NM_001146339	ENSG00000187135	VSTM2B	-	V-set and transmembrane domain containing 2B	protein-coding
59486	chr13	26479651	26480100	+	0	NA	Intergenic	Intergenic	-77808	NM_006646	10810		NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	WASP family member 3	protein-coding
200274	chr6	132676571	132676730	+	0	NA	Intergenic	Intergenic	-17468	NM_138327	134864		NM_138327	ENSG00000146399	TAAR1	TA1|TAR1|TRAR1	trace amine associated receptor 1	protein-coding
3742	chr1	16638251	16639300	+	0	NA	Intergenic	Intergenic	-6799	NR_027504	11209		NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
179815	chr5	446171	446330	+	0	NA	exon (NM_007277, exon 2 of 13)	exon (NM_007277, exon 2 of 13)	3074	NM_007277	11336		NM_007277	ENSG00000180104	EXOC3	SEC6|SEC6L1|Sec6p	exocyst complex component 3	protein-coding
212576	chr7	128914551	128915300	+	0	NA	Intergenic	Intergenic	-4216	NM_199349	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
124430	chr19	58473121	58473980	+	0	NA	3' UTR (NM_014347, exon 4 of 4)	3' UTR (NM_014347, exon 4 of 4)	-2802	NM_017908	55663		NM_017908	ENSG00000083838	ZNF446	ZKSCAN20|ZSCAN30|ZSCAN52	zinc finger protein 446	protein-coding
2492	chr1	9682451	9682750	+	0	NA	intron (NR_126368, intron 1 of 1)	AluSx|SINE|Alu	4974	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
46522	chr11	128454821	128455150	+	0	NA	Intergenic	Intergenic	67325	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
225206	chr9	34124871	34125200	+	0	NA	exon (NM_015397, exon 2 of 9)	exon (NM_015397, exon 2 of 9)	1663	NM_015397	25853		NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
195607	chr6	37648201	37649130	+	0	NA	intron (NM_153487, intron 9 of 16)	CpG	49218	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
7721	chr1	36107671	36108030	+	0	NA	intron (NM_001294347, intron 2 of 3)	intron (NM_001294347, intron 2 of 3)	17372	NM_005202	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
163543	chr3	51678071	51678800	+	0	NA	intron (NM_001243727, intron 2 of 3)	intron (NM_001243727, intron 2 of 3)	6808	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
20253	chr1	193480351	193480650	+	0	NA	Intergenic	L1MB8|LINE|L1	175755	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
149077	chr21	15735471	15735630	+	0	NA	intron (NM_001352560, intron 1 of 23)	MER2|DNA|TcMar-Tigger	5568	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
109255	chr19	524801	525580	+	0	NA	Intergenic	Intergenic	-6570	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
183311	chr5	76641301	76641830	+	0	NA	intron (NM_006633, intron 17 of 35)	intron (NM_006633, intron 17 of 35)	-18162	NM_004101	2151		NM_004101	ENSG00000164220	F2RL2	PAR-3|PAR3	coagulation factor II thrombin receptor like 2	protein-coding
90605	chr17	1627571	1629600	+	0	NA	promoter-TSS (NM_001321365)	promoter-TSS (NM_001321365)	-169	NM_001284498	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
130972	chr2	87568721	87569130	+	0	NA	Intergenic	Intergenic	-60830	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
173176	chr4	6715871	6717650	+	0	NA	exon (NM_018366, exon 1 of 1)	exon (NM_018366, exon 1 of 1)	586	NM_018366	55330		NM_018366	ENSG00000186222	BLOC1S4	BCAS4L|BLOS4|CNO	biogenesis of lysosomal organelles complex 1 subunit 4	protein-coding
64701	chr14	34018251	34019180	+	0	NA	Intergenic	Intergenic	-67641	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
146729	chr20	50691351	50691650	+	0	NA	promoter-TSS (NM_001290268)	promoter-TSS (NM_001290268)	42	NM_001290268	140876		NM_080829	ENSG00000042062	RIPOR3	C20orf175|C20orf176|FAM65C	RIPOR family member 3	protein-coding
223592	chr8	144294871	144295230	+	0	NA	intron (NM_005526, intron 1 of 12)	intron (NM_005526, intron 1 of 12)	3446	NM_005526	3297		NM_005526	ENSG00000185122	HSF1	HSTF1	heat shock transcription factor 1	protein-coding
238392	chrX	150367101	150367400	+	0	NA	intron (NM_001177465, intron 1 of 4)	intron (NM_001177465, intron 1 of 4)	3933	NM_001177465	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
175300	chr4	67972701	67972950	+	0	NA	Intergenic	L1PA2|LINE|L1	-9332	NM_001114387	339967		NM_182606	ENSG00000187054	TMPRSS11A	ECRG1|HATL1|HESP	transmembrane serine protease 11A	protein-coding
195957	chr6	41944271	41944430	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-2502	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
38707	chr11	46647621	46647880	+	0	NA	intron (NM_001205121, intron 5 of 16)	AluJr|SINE|Alu	30197	NM_001346311	9776		NM_014741	ENSG00000175224	ATG13	KIAA0652|PARATARG8	autophagy related 13	protein-coding
28616	chr10	58282301	58282950	+	0	NA	intron (NM_018464, intron 2 of 2)	MER2|DNA|TcMar-Tigger	13463	NM_018464	55847		NM_018464	ENSG00000122873	CISD1	C10orf70|MDS029|ZCD1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding
57058	chr12	120902571	120903700	+	0	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	1223	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
69764	chr14	99163071	99163230	+	0	NA	Intergenic	AluSz|SINE|Alu	109047	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
53306	chr12	64568271	64568630	+	0	NA	Intergenic	Intergenic	-42045	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
181602	chr5	43521301	43521500	+	0	NA	Intergenic	AluY|SINE|Alu	-6252	NM_198566	375444		NM_198566	ENSG00000172244	C5orf34	-	chromosome 5 open reading frame 34	protein-coding
137671	chr2	197456021	197456680	+	0	NA	intron (NM_001320820, intron 1 of 4)	AluSc|SINE|Alu	2586	NM_001320819	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
36056	chr11	2946751	2947050	+	0	NA	intron (NM_001369382, intron 15 of 15).2	intron (NM_001369382, intron 15 of 15).2	16993	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
162695	chr3	48966421	48966680	+	0	NA	intron (NM_001349214, intron 5 of 15)	intron (NM_001349214, intron 5 of 15)	-23358	NM_177938	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
8210	chr1	39671351	39672190	+	0	NA	intron (NM_032526, intron 1 of 5)	CpG	268	NM_032526	84618		NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
184082	chr5	93592651	93592950	+	0	NA	intron (NM_005654, intron 2 of 2)	intron (NM_005654, intron 2 of 2)	9578	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
177925	chr4	131752331	131752450	+	0	NA	Intergenic	SST1|Satellite|centr	-12448	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
2002	chr1	6740301	6741150	+	0	NA	Intergenic	Intergenic	13198	NR_104621	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
4931	chr1	23914871	23915230	+	0	NA	Intergenic	Intergenic	-1688	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
120722	chr19	45326051	45326400	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-3350	NM_001824	1158		NM_001824	ENSG00000104879	CKM	CKMM|CPK-M|M-CK	creatine kinase, M-type	protein-coding
48549	chr12	10224501	10225450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	12098	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
39078	chr11	47988851	47988950	+	0	NA	intron (NM_002843, intron 1 of 24)	AluY|SINE|Alu	8341	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
188253	chr5	151071921	151072180	+	0	NA	intron (NM_001252390, intron 1 of 17)	MIRb|SINE|MIR	-6919	NM_001258456	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
117623	chr19	23273251	23274880	+	0	NA	intron (NR_103741, intron 1 of 4)	CpG	186	NR_103742	100132815		NR_103741		IPO5P1	-	importin 5 pseudogene 1	pseudo
140255	chr2	232237551	232237850	+	0	NA	intron (NR_046477, intron 9 of 18)	intron (NR_046477, intron 9 of 18)	65047	NR_030288	693147		NR_030288	ENSG00000207626	MIR562	MIRN562|hsa-mir-562	microRNA 562	ncRNA
100077	chr17	58279451	58280330	+	0	NA	exon (NM_000250, exon 3 of 12)	exon (NM_000250, exon 3 of 12)	1045	NM_000250	4353		NM_000250	ENSG00000005381	MPO	-	myeloperoxidase	protein-coding
230079	chr9	127455051	127455630	+	0	NA	intron (NR_168892, intron 4 of 25)	intron (NR_168892, intron 4 of 25)	3085	NM_001005374	90678		NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
181952	chr5	55029321	55029580	+	0	NA	intron (NM_002104, intron 2 of 4)	intron (NM_002104, intron 2 of 4)	5194	NM_002104	3003		NM_002104	ENSG00000113088	GZMK	TRYP2	granzyme K	protein-coding
84477	chr16	30477151	30477850	+	0	NA	intron (NM_001114380, intron 4 of 28)	AluJr|SINE|Alu	4758	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
131127	chr2	90398101	90398580	+	0	NA	Intergenic	Intergenic	-760433	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
201129	chr6	142888351	142888450	+	0	NA	intron (NM_006734, intron 1 of 9)	AluJo|SINE|Alu	56776	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
42381	chr11	68841421	68842450	+	0	NA	promoter-TSS (NM_001876)	promoter-TSS (NM_001876)	-4	NM_001031847	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
166039	chr3	108592051	108592350	+	0	NA	intron (NM_014648, intron 1 of 32)	L2a|LINE|L2	2478	NM_014648	9666		NM_014648	ENSG00000198919	DZIP3	PPP1R66|UURF2|hRUL138	DAZ interacting zinc finger protein 3	protein-coding
226133	chr9	63354301	63354560	+	0	NA	intron (NR_160665, intron 3 of 3)	intron (NR_160665, intron 3 of 3)	19892	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
71517	chr14	106133221	106133550	+	0	NA	Intergenic	Intergenic	-154289	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
98612	chr17	47757921	47758180	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	24814	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
41816	chr11	67022451	67022550	+	0	NA	promoter-TSS (NM_001177880)	promoter-TSS (NM_001177880)	-293	NM_001177880	91683		NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
209471	chr7	76514801	76515200	+	0	NA	intron (NM_030570, intron 3 of 4)	intron (NM_030570, intron 3 of 4)	4448	NM_001347684	105375355		NM_030570	ENSG00000243566	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
32450	chr10	102632921	102633730	+	0	NA	3' UTR (NM_016169, exon 12 of 12)	3' UTR (NM_016169, exon 12 of 12)	-11154	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
104873	chr17	81863301	81863680	+	0	NA	Intergenic	Intergenic	-2955	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
186846	chr5	139455201	139455880	+	0	NA	intron (NM_001293739, intron 5 of 9)	intron (NM_001293739, intron 5 of 9)	7203	NM_001293739	641700		NM_001077693	ENSG00000249751	ECSCR	ARIA|ECSM2	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding
190461	chr5	180080521	180081200	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-9101	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
131292	chr2	96105601	96106250	+	0	NA	Intergenic	Intergenic	10646	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
196289	chr6	42995501	42996300	+	0	NA	intron (NM_180976, intron 2 of 15)	AluYe5|SINE|Alu	11330	NM_001270476	5528		NM_006245	ENSG00000112640	PPP2R5D	B56D|B56delta|HJS1|MRD35	protein phosphatase 2 regulatory subunit B'delta	protein-coding
52249	chr12	54414601	54414800	+	0	NA	intron (NM_002205, intron 1 of 29)	AluY|SINE|Alu	4566	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
160699	chr3	32374601	32375480	+	0	NA	Intergenic	AluJb|SINE|Alu	-16813	NM_181472	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
103926	chr17	79828301	79828850	+	0	NA	TTS (NR_146504)	TTS (NR_146504)	5123	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
43413	chr11	77387851	77387950	+	0	NA	intron (NM_001376305, intron 1 of 13)	intron (NM_001376305, intron 1 of 13)	24071	NM_001376286	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
58647	chr12	132515621	132515880	+	0	NA	intron (NM_001382740, intron 2 of 11)	AluSz|SINE|Alu	10344	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171072	chr3	195442401	195444280	+	0	NA	promoter-TSS (NM_012287)	promoter-TSS (NM_012287)	-320	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
30893	chr10	86968301	86969130	+	0	NA	intron (NM_006829, intron 1 of 2)	CpG	233	NM_006829	10974		NM_006829	ENSG00000148671	ADIRF	AFRO|APM2|C10orf116|apM-2	adipogenesis regulatory factor	protein-coding
217749	chr8	30796851	30796970	+	0	NA	intron (NM_001009552, intron 3 of 6)	AluJr|SINE|Alu	15908	NM_001009552	5516		NM_004156	ENSG00000104695	PPP2CB	PP2Abeta|PP2CB	protein phosphatase 2 catalytic subunit beta	protein-coding
82728	chr16	21159521	21159780	+	0	NA	promoter-TSS (NM_017539)	promoter-TSS (NM_017539)	-209	NM_017539	55567		NM_017539	ENSG00000158486	DNAH3	DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3	dynein axonemal heavy chain 3	protein-coding
210321	chr7	99490071	99490530	+	0	NA	intron (NM_001345968, intron 2 of 2)	AluSg|SINE|Alu	9981	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
232075	chr9	133508951	133509850	+	0	NA	Intergenic	Intergenic	15559	NM_001080483	389827		NM_001080483	ENSG00000187616	MYMK	MYOMAKER|TMEM226|TMEM8C	myomaker, myoblast fusion factor	protein-coding
142259	chr20	3167271	3167530	+	0	NA	intron (NM_001367609, intron 2 of 4)	intron (NM_001367609, intron 2 of 4)	6149	NM_001365618	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
143367	chr20	26279151	26279450	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-70067	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
30922	chr10	87200651	87201320	+	0	NA	Intergenic	L1ME2|LINE|L1	-24463	NM_001099338	728118		NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
166333	chr3	112908271	112908530	+	0	NA	Intergenic	Intergenic	-61544	NM_001370552	344807		NM_001008784	ENSG00000206531	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1 like	protein-coding
137358	chr2	196157751	196158130	+	0	NA	intron (NM_004226, intron 2 of 7)	Charlie4z|DNA|hAT-Charlie	13638	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
113842	chr19	10632971	10633330	+	0	NA	intron (NM_001363611, intron 10 of 22)	AluSx3|SINE|Alu	7597	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
87519	chr16	71883301	71885130	+	0	NA	promoter-TSS (NM_017530)	promoter-TSS (NM_017530)	-25	NM_001201554	55565		NM_017530	ENSG00000102984	ZNF821	-	zinc finger protein 821	protein-coding
190790	chr6	694551	695100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1684	NR_073064	55770		NM_018303	ENSG00000112685	EXOC2	NEDFACH|SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
22502	chr1	221741501	221742700	+	0	NA	promoter-TSS (NR_111940)	promoter-TSS (NR_111940)	-11	NM_007207	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
138993	chr2	218316501	218317400	+	0	NA	intron (NM_015488, intron 2 of 9)	intron (NM_015488, intron 2 of 9)	-6229	NM_022572	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
216159	chr8	11701921	11702180	+	0	NA	intron (NM_001308094, intron 2 of 6)	intron (NM_001308094, intron 2 of 6)	-2152	NM_001308093	2626		NM_002052	ENSG00000136574	GATA4	ASD2|TACHD|TOF|VSD1	GATA binding protein 4	protein-coding
201994	chr6	152380421	152381080	+	0	NA	intron (NR_120501, intron 1 of 1)	intron (NR_120501, intron 1 of 1)	220	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
53455	chr12	65584571	65584750	+	0	NA	intron (NR_120434, intron 3 of 4)	AluYa5|SINE|Alu	-18209	NR_146529	105369807		NR_146529		LINC02454	-	long intergenic non-protein coding RNA 2454	ncRNA
44556	chr11	108197501	108197700	+	0	NA	intron (NM_001321307, intron 1 of 17)	intron (NM_001321307, intron 1 of 17)	25038	NM_001321307	4863		NM_002519	ENSG00000149308	NPAT	E14|E14/NPAT|p220	nuclear protein, coactivator of histone transcription	protein-coding
230373	chr9	128077051	128077600	+	0	NA	intron (NM_001006641, intron 1 of 9)	AluYc|SINE|Alu	9125	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
21106	chr1	203512901	203513500	+	0	NA	Intergenic	LTR103b_Mam|LTR|ERV1?	19047	NM_014359	26254		NM_014359	ENSG00000188770	OPTC	OPT	opticin	protein-coding
74857	chr15	63531371	63532330	+	0	NA	intron (NR_046341, intron 2 of 15)	MER5B|DNA|hAT-Charlie	27257	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
37795	chr11	32583151	32584200	+	0	NA	promoter-TSS (NM_006360)	promoter-TSS (NM_006360)	-156	NM_001307929	10480		NM_006360	ENSG00000149100	EIF3M	B5|GA17|PCID1|TANGO7|hfl-B5	eukaryotic translation initiation factor 3 subunit M	protein-coding
238143	chrX	136749771	136750030	+	0	NA	intron (NM_004840, intron 2 of 21)	intron (NM_004840, intron 2 of 21)	17915	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
163270	chr3	50302771	50303550	+	0	NA	non-coding (NR_047690, exon 1 of 3)	non-coding (NR_047690, exon 1 of 3)	414	NM_153285	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
53937	chr12	71762351	71763000	+	0	NA	intron (NM_014999, intron 1 of 6)	AluSq2|SINE|Alu	7812	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
224414	chr9	15104821	15105100	+	0	NA	Intergenic	Intergenic	111633	NR_003920	389705		NR_003920		LOC389705	-	histone PARylation factor 1 pseudogene	pseudo
82183	chr16	14936071	14936230	+	0	NA	intron (NR_146231, intron 30 of 38)	AluSx4|SINE|Alu	-1293	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
101144	chr17	65047901	65048550	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	7549	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
86711	chr16	67547801	67548900	+	0	NA	Intergenic	Intergenic	10888	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
37760	chr11	32088071	32088700	+	0	NA	Intergenic	Intergenic	-2689	NM_002901	5954		NM_002901	ENSG00000049449	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1	protein-coding
107175	chr18	35526571	35526730	+	0	NA	Intergenic	Intergenic	-28690	NM_001098817	125476		NM_194281	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
34022	chr10	124710051	124710150	+	0	NA	intron (NR_120630, intron 2 of 2)	intron (NR_120630, intron 2 of 2)	6072	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
50664	chr12	48823551	48823650	+	0	NA	intron (NM_001206915, intron 2 of 11)	intron (NM_001206915, intron 2 of 11)	5104	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
6482	chr1	28365721	28366430	+	0	NA	Intergenic	(AACCAT)n|Simple_repeat|Simple_repeat	-3665	NM_001350161	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
9695	chr1	53063251	53063350	+	0	NA	intron (NM_153703, intron 1 of 10)	CpG	1087	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
91102	chr17	3659601	3660000	+	0	NA	intron (NM_001374494, intron 9 of 10)	intron (NM_001374494, intron 9 of 10)	8778	NM_014604	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
199264	chr6	111855471	111855800	+	0	NA	intron (NM_002037, intron 1 of 13)	BLACKJACK|DNA|hAT-Blackjack	17436	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
226716	chr9	75148721	75149200	+	0	NA	Intergenic	Intergenic	60446	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
92506	chr17	8888251	8889630	+	0	NA	5' UTR (NM_001251851, exon 10 of 19)	5' UTR (NM_001251851, exon 10 of 19)	-21263	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
29330	chr10	69406201	69406400	+	0	NA	intron (NM_001057, intron 4 of 4)	intron (NM_001057, intron 4 of 4)	10618	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
19567	chr1	179141001	179141200	+	0	NA	intron (NM_007314, intron 1 of 11)	AluSx1|SINE|Alu	1976	NM_001168239	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
65138	chr14	45085151	45085400	+	0	NA	intron (NM_017922, intron 1 of 13)	intron (NM_017922, intron 1 of 13)	1159	NM_017922	55015		NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
35207	chr11	812671	813300	+	0	NA	TTS (NM_001004)	TTS (NM_001004)	1304	NR_002585	619565		NR_002585	ENSG00000199785	SNORA52	ACA52	small nucleolar RNA, H/ACA box 52	snoRNA
143605	chr20	31712851	31713250	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-8457	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
171168	chr3	195637821	195638150	+	0	NA	Intergenic	MIRb|SINE|MIR	14174	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
40263	chr11	63767891	63768900	+	0	NA	intron (NM_001144936, intron 1 of 4)	CpG	380	NM_001144936	65998		NM_023941	ENSG00000188070	ZFTA	C11orf95	zinc finger translocation associated	protein-coding
95977	chr17	39158771	39159100	+	0	NA	intron (NM_001143968, intron 5 of 5)	FLAM_C|SINE|Alu	7226	NM_001143968	390790		NM_001143968	ENSG00000141748	ARL5C	ARL12	ADP ribosylation factor like GTPase 5C	protein-coding
81744	chr16	11361701	11362550	+	0	NA	Intergenic	Intergenic	16666	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
230046	chr9	127394551	127394850	+	0	NA	Intergenic	AluSg|SINE|Alu	-2438	NM_001271711	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
2039	chr1	7747621	7747880	+	0	NA	exon (NM_001349622, exon 9 of 13)	exon (NM_001349622, exon 9 of 13)	-23546	NM_004781	9341		NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding
622	chr1	1322771	1323380	+	0	NA	5' UTR (NM_001256456, exon 2 of 19)	5' UTR (NM_001256456, exon 2 of 19)	1585	NM_001256463	54973		NM_017871	ENSG00000127054	INTS11	CPSF3L|CPSF73L|INT11|NEDMLOB|PSF3L|RC-68|RC68	integrator complex subunit 11	protein-coding
129083	chr2	65110501	65110700	+	0	NA	intron (NM_004161, intron 1 of 5)	L1MD3|LINE|L1	19506	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
79038	chr16	73851	74830	+	0	NA	Intergenic	Intergenic	-1709	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
65831	chr14	54895201	54895800	+	0	NA	intron (NM_001024024, intron 1 of 6)	intron (NM_001024024, intron 1 of 6)	7324	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
61839	chr13	76723401	76723800	+	0	NA	Intergenic	Intergenic	162805	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
39103	chr11	48050251	48051030	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-46142	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
228940	chr9	113347971	113348500	+	0	NA	Intergenic	AluJb|SINE|Alu	-1306	NM_001317944	54836		NM_017688	ENSG00000119411	BSPRY	-	B-box and SPRY domain containing	protein-coding
199786	chr6	126033771	126033930	+	0	NA	intron (NM_001350597, intron 13 of 13)	intron (NM_001350597, intron 13 of 13)	47310	NM_001031712	60487		NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
120895	chr19	45590551	45591580	+	0	NA	exon (NM_005282, exon 2 of 2)	exon (NM_005282, exon 2 of 2)	-6263	NM_001017989	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
143955	chr20	32823001	32823500	+	0	NA	intron (NM_012325, intron 1 of 6)	intron (NM_012325, intron 1 of 6)	3296	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
73962	chr15	51829151	51830650	+	0	NA	intron (NM_014547, intron 1 of 9)	CpG	247	NM_014547	29766		NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
169566	chr3	170359251	170359350	+	0	NA	promoter-TSS (NM_001248008)	promoter-TSS (NM_001248008)	-323	NM_001145097	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
161290	chr3	39327621	39328480	+	0	NA	Intergenic	Intergenic	-1659	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
3670	chr1	16482801	16483000	+	0	NA	intron (NR_023386, intron 10 of 14)	AluSg7|SINE|Alu	9801	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
14900	chr1	147078601	147079180	+	0	NA	Intergenic	CpG	5866	NR_121645	101447996		NR_121645	ENSG00000286172	RNVU1-8	RNU1-145|vU1.8	RNA, variant U1 small nuclear 8	snRNA
185993	chr5	133611771	133611930	+	0	NA	intron (NM_015082, intron 1 of 15)	CpG	691	NM_015082	23105		NM_015082	ENSG00000053108	FSTL4	-	follistatin like 4	protein-coding
153860	chr22	30225551	30226050	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-13394	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
136914	chr2	189673951	189675250	+	0	NA	promoter-TSS (NM_001378068)	promoter-TSS (NM_001378068)	-70	NM_001378068	150709		NM_144708	ENSG00000151687	ANKAR	-	ankyrin and armadillo repeat containing	protein-coding
67975	chr14	74903001	74903700	+	0	NA	TTS (NM_031464)	TTS (NM_031464)	19092	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
214329	chr7	149286851	149287200	+	0	NA	intron (NR_036573, intron 1 of 10)	intron (NR_036573, intron 1 of 10)	1744	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
173149	chr4	6676071	6676300	+	0	NA	TTS (NR_158178)	TTS (NR_158178)	2110	NR_015433								
203974	chr7	1619171	1619750	+	0	NA	promoter-TSS (NR_165252)	promoter-TSS (NR_165252)	-135	NR_165252	105375303		NR_165252		LOC105375303	-	uncharacterized LOC105375303	ncRNA
60143	chr13	39776671	39776830	+	0	NA	intron (NM_001145079, intron 18 of 18)	intron (NM_001145079, intron 18 of 18)	-112615	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
228696	chr9	108911171	108911330	+	0	NA	intron (NM_001318360, intron 11 of 36)	intron (NM_001318360, intron 11 of 36)	22874	NM_001330749	8518		NM_003640	ENSG00000070061	ELP1	DYS|FD|IKAP|IKBKAP|IKI3|TOT1	elongator acetyltransferase complex subunit 1	protein-coding
54698	chr12	93425321	93425750	+	0	NA	intron (NM_003348, intron 1 of 3)	L2c|LINE|L2	16412	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
15928	chr1	151788721	151789150	+	0	NA	intron (NM_001083963, intron 1 of 12)	intron (NM_001083963, intron 1 of 12)	1565	NM_001083965	11022		NM_006862	ENSG00000182134	TDRKH	TDRD2	tudor and KH domain containing	protein-coding
128190	chr2	53945571	53945930	+	0	NA	intron (NM_014614, intron 3 of 46)	intron (NM_014614, intron 3 of 46)	25243	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
198297	chr6	100258871	100259030	+	0	NA	Intergenic	Intergenic	205506	NM_001374769	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
229219	chr9	114900271	114900650	+	0	NA	TTS (NM_001244)	TTS (NM_001244)	30131	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
59260	chr13	24118671	24118830	+	0	NA	intron (NM_001286792, intron 3 of 14)	L2c|LINE|L2	-41970	NM_153023	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
164691	chr3	67652371	67652530	+	0	NA	intron (NM_001177599, intron 1 of 10)	intron (NM_001177599, intron 1 of 10)	2162	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
194469	chr6	33204021	33205880	+	0	NA	TTS (NM_006979)	TTS (NM_006979)	295	NM_014234	7923		NM_014234	ENSG00000204228	HSD17B8	D6S2245E|FABG|FABGL|H2-KE6|HKE6|KE6|RING2|SDR30C1|dJ1033B10.9	hydroxysteroid 17-beta dehydrogenase 8	protein-coding
206983	chr7	38319751	38320430	+	0	NA	Intergenic	Intergenic	-21487	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
197416	chr6	73526421	73526680	+	0	NA	Intergenic	AluSx|SINE|Alu	-5518	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
105354	chr17	82640801	82641000	+	0	NA	intron (NM_019613, intron 2 of 9)	intron (NM_019613, intron 2 of 9)	7544	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
173092	chr4	6271751	6272530	+	0	NA	intron (NM_001145853, intron 1 of 7)	intron (NM_001145853, intron 1 of 7)	2290	NM_006005	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
181420	chr5	40778601	40778800	+	0	NA	intron (NM_206907, intron 1 of 9)	intron (NM_206907, intron 1 of 9)	19477	NM_001355037	5562		NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPK alpha 1|AMPKa1	protein kinase AMP-activated catalytic subunit alpha 1	protein-coding
210827	chr7	100894371	100895300	+	0	NA	promoter-TSS (NM_001367917)	promoter-TSS (NM_001367917)	-229	NM_001367917	43		NM_000665	ENSG00000087085	ACHE	ACEE|ARACHE|N-ACHE|YT	acetylcholinesterase (Yt blood group)	protein-coding
206212	chr7	28410251	28410350	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	-2218	NM_182898	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
143861	chr20	32541501	32541700	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	31641	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
10000	chr1	55189571	55189750	+	0	NA	intron (NM_015306, intron 1 of 67)	L1MB7|LINE|L1	25704	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
59295	chr13	24262551	24262980	+	0	NA	intron (NM_153023, intron 3 of 11)	intron (NM_153023, intron 3 of 11)	-7922	NM_001286794	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
212549	chr7	128862151	128863950	+	0	NA	promoter-TSS (NR_149055)	promoter-TSS (NR_149055)	194	NM_004231	9296		NM_004231	ENSG00000128524	ATP6V1F	ATP6S14|VATF|Vma7	ATPase H+ transporting V1 subunit F	protein-coding
133272	chr2	113501851	113502150	+	0	NA	TTS (NM_012184)	TTS (NM_012184)	2916	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
160970	chr3	37155001	37155200	+	0	NA	intron (NM_001348298, intron 2 of 21)	MIRc|SINE|MIR	-10918	NR_168330	100421436		NR_168330		UBE2FP1	-	UBE2F pseudogene 1	pseudo
98435	chr17	46822751	46822850	+	0	NA	Intergenic	Intergenic	-4108	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
223747	chr8	144511501	144512000	+	0	NA	TTS (NR_130120)	TTS (NR_130120)	2680	NM_138431	113655		NM_138431	ENSG00000167700	MFSD3	SLC33A2	major facilitator superfamily domain containing 3	protein-coding
234071	chrX	8738751	8738850	+	0	NA	Intergenic	Intergenic	-6663	NM_000216	3730		NM_000216	ENSG00000011201	ANOS1	ADMLX|HH1|HHA|KAL|KAL1|KALIG-1|KMS|WFDC19	anosmin 1	protein-coding
215425	chr7	157660271	157660530	+	0	NA	intron (NM_130842, intron 12 of 21)	intron (NM_130842, intron 12 of 21)	-85978	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
148936	chr21	10014851	10014950	+	0	NA	Intergenic	Intergenic	-193839	NR_038377	441058		NM_001004347		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
5664	chr1	26314201	26314630	+	0	NA	intron (NM_145345, intron 1 of 14)	L1MEg|LINE|L1	-3543	NM_001803	1043		NM_001803	ENSG00000169442	CD52	CDW52|EDDM5|HE5	CD52 molecule	protein-coding
214023	chr7	143279101	143280450	+	0	NA	intron (NR_133932, intron 2 of 2)	intron (NR_133932, intron 2 of 2)	-5124	NR_104253	135932		NM_153345	ENSG00000178826	TMEM139	-	transmembrane protein 139	protein-coding
75882	chr15	69743251	69743750	+	0	NA	Intergenic	MIR3|SINE|MIR	-91734	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
228668	chr9	107295121	107295580	+	0	NA	intron (NM_001244713, intron 1 of 9)	L2a|LINE|L2	10581	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
203038	chr6	164108871	164109100	+	0	NA	Intergenic	Intergenic	-437501	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
236930	chrX	97515011	97515300	+	0	NA	intron (NM_006729, intron 26 of 26)	L1PA3|LINE|L1	49380	NR_125391	10824		NR_125391	ENSG00000236256	DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
221465	chr8	124459351	124459850	+	0	NA	Intergenic	AluSz|SINE|Alu	8780	NM_017956	55039		NM_017956	ENSG00000183665	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog	protein-coding
149226	chr21	25561451	25562630	+	0	NA	promoter-TSS (NR_001458)	promoter-TSS (NR_001458)	-105	NR_001458	114614		NR_001458	ENSG00000234883	MIR155HG	BIC|BIC-155|MIRHG2|NCRNA00172|miPEP155	MIR155 host gene	ncRNA
205702	chr7	23298801	23300300	+	0	NA	exon (NM_138446, exon 1 of 4)	exon (NM_138446, exon 1 of 4)	211	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
32111	chr10	101216251	101216880	+	0	NA	Intergenic	CpG	12395	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
34392	chr10	132358551	132358930	+	0	NA	intron (NM_030626, intron 8 of 10)	intron (NM_030626, intron 8 of 10)	21400	NM_001309474	80313		NM_030626	ENSG00000148814	LRRC27	-	leucine rich repeat containing 27	protein-coding
3918	chr1	17405851	17406500	+	0	NA	TTS (NM_001136204)	TTS (NM_001136204)	32361	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
57126	chr12	121211971	121212630	+	0	NA	intron (NR_046373, intron 1 of 10)	intron (NR_046373, intron 1 of 10)	2171	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
27875	chr10	41862251	41862350	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	505745	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
94291	chr17	28723971	28724530	+	0	NA	TTS (NR_000014)	TTS (NR_000014)	569	NR_000009	26772		NR_000009	ENSG00000238597	SNORD4B	RNU101B|Z17B	small nucleolar RNA, C/D box 4B	snoRNA
156432	chr22	41232071	41232230	+	0	NA	TTS (NM_031488)	TTS (NM_031488)	8781	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
125511	chr2	12720121	12720650	+	0	NA	intron (NM_021643, intron 1 of 2)	intron (NM_021643, intron 1 of 2)	3449	NR_027303	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
88482	chr16	85100801	85101000	+	0	NA	intron (NM_001366920, intron 6 of 7)	AluY|SINE|Alu	11572	NM_198491	339145		NM_198491	ENSG00000153789	CIBAR2	FAM92B	CBY1 interacting BAR domain containing 2	protein-coding
36783	chr11	9457251	9457750	+	0	NA	Intergenic	AluSx|SINE|Alu	3198	NR_036539	644656		NR_036539	ENSG00000268403	LOC644656	-	uncharacterized LOC644656	ncRNA
32818	chr10	109936101	109936550	+	0	NA	Intergenic	Intergenic	-12772	NM_001167604	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
24566	chr1	244963951	244964700	+	0	NA	TTS (NR_111907)	TTS (NR_111907)	-5544	NM_032328	84288		NM_032328	ENSG00000203666	EFCAB2	CFAP200|DRC8	EF-hand calcium binding domain 2	protein-coding
126364	chr2	27438671	27438830	+	0	NA	intron (NM_001321361, intron 11 of 18)	AluJb|SINE|Alu	-3616	NM_001168364	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
125836	chr2	24362271	24362930	+	0	NA	Intergenic	Intergenic	-2064	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
210545	chr7	100282551	100282650	+	0	NA	Intergenic	Intergenic	-10368	NR_028040	352954		NM_178831	ENSG00000291122	CASTOR3P	CASTOR3|GATS|STAG3OS	CASTOR family member 3, pseudogene	pseudo
76940	chr15	78075471	78076350	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	1742	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
195365	chr6	36679701	36680950	+	0	NA	intron (NM_001220778, intron 1 of 2)	CpG	1611	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
198122	chr6	90397871	90399030	+	0	NA	Intergenic	Intergenic	85708	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
159045	chr3	11379201	11379480	+	0	NA	intron (NM_001136031, intron 16 of 17)	intron (NM_001136031, intron 16 of 17)	106943	NM_001144912	10533		NM_006395	ENSG00000197548	ATG7	APG7-LIKE|APG7L|GSA7|SCAR31	autophagy related 7	protein-coding
129389	chr2	68817571	68817730	+	0	NA	intron (NM_001364820, intron 6 of 9)	intron (NM_001364820, intron 6 of 9)	42740	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
20773	chr1	201014301	201015000	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	9064	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
21939	chr1	207870171	207870400	+	0	NA	Intergenic	Intergenic	40840	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
25931	chr10	11334721	11334980	+	0	NA	3' UTR (NM_001326324, exon 15 of 15)	3' UTR (NM_001326324, exon 15 of 15)	9824	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
171196	chr3	195698001	195698400	+	0	NA	intron (NR_122105, intron 2 of 4)	L2|LINE|L2	-1201	NR_030296	693155		NR_030296	ENSG00000207650	MIR570	MIRN570|hsa-mir-570	microRNA 570	ncRNA
125497	chr2	12556801	12557000	+	0	NA	intron (NR_110196, intron 4 of 5)	MIRb|SINE|MIR	-159972	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
17044	chr1	156084021	156084680	+	0	NA	intron (NM_001282625, intron 2 of 12)	intron (NM_001282625, intron 2 of 12)	1777	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
95624	chr17	37644471	37644630	+	0	NA	Intergenic	L2a|LINE|L2	-1104	NM_007010	11056		NM_007010	ENSG00000278053	DDX52	HUSSY19|ROK1	DExD-box helicase 52	protein-coding
221572	chr8	125154751	125155050	+	0	NA	intron (NM_173685, intron 4 of 7)	intron (NM_173685, intron 4 of 7)	63040	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
83350	chr16	25051201	25051500	+	0	NA	Intergenic	Intergenic	-15537	NR_135196	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
82830	chr16	21496371	21497150	+	0	NA	intron (NR_027155, intron 1 of 28)	AluSx|SINE|Alu	-4766	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
135253	chr2	159720071	159720430	+	0	NA	intron (NM_001376237, intron 2 of 10)	AluSg|SINE|Alu	7744	NM_001376255	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
112524	chr19	6512951	6513330	+	0	NA	Intergenic	AluY|SINE|Alu	-10292	NM_001289123	10382		NM_006087	ENSG00000104833	TUBB4A	DYT4|TUBB4|beta-5	tubulin beta 4A class IVa	protein-coding
36128	chr11	3106601	3106800	+	0	NA	intron (NM_145638, intron 8 of 20)	L2b|LINE|L2	-49277	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
217776	chr8	33421251	33421430	+	0	NA	intron (NM_032664, intron 3 of 4)	intron (NM_032664, intron 3 of 4)	51806	NM_032664	84750		NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
43849	chr11	87421321	87421580	+	0	NA	Intergenic	Intergenic	297961	NR_135090	105369423		NR_135090	ENSG00000255183	LINC02711	-	long intergenic non-protein coding RNA 2711	ncRNA
100226	chr17	59310951	59311500	+	0	NA	Intergenic	Intergenic	-20430	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
17552	chr1	156803301	156803650	+	0	NA	Intergenic	Intergenic	-12275	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
190338	chr5	179632371	179633250	+	0	NA	intron (NM_001364226, intron 1 of 13)	AluSx1|SINE|Alu	1974	NM_001364233	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
106382	chr18	13353251	13353600	+	0	NA	intron (NM_001378098, intron 1 of 5)	L1MB2|LINE|L1	14822	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
212988	chr7	130987251	130987550	+	0	NA	intron (NR_109855, intron 2 of 4)	L2a|LINE|L2	73936	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
122899	chr19	50554351	50554450	+	0	NA	intron (NM_001080457, intron 1 of 2)	intron (NM_001080457, intron 1 of 2)	-3358	NM_001348568	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
21288	chr1	204449471	204450080	+	0	NA	intron (NM_001377335, intron 15 of 35)	intron (NM_001377335, intron 15 of 35)	-37958	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
114344	chr19	12167871	12168430	+	0	NA	intron (NM_001348013, intron 1 of 2)	AluSq|SINE|Alu	5054	NM_003437	7695		NM_003437	ENSG00000196646	ZNF136	pHZ-20	zinc finger protein 136	protein-coding
15364	chr1	150094951	150095450	+	0	NA	intron (NM_001279354, intron 13 of 14)	L2a|LINE|L2	27424	NR_103998	11311		NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
183817	chr5	83109501	83109700	+	0	NA	intron (NM_022550, intron 2 of 7)	intron (NM_022550, intron 2 of 7)	32053	NM_001318012	7518		NM_003401	ENSG00000152422	XRCC4	SSMED|hXRCC4	X-ray repair cross complementing 4	protein-coding
36821	chr11	9755451	9756150	+	0	NA	non-coding (NR_033972, exon 3 of 3)	non-coding (NR_033972, exon 3 of 3)	-2493	NR_036485	283104		NR_036485	ENSG00000246273	SBF2-AS1	-	SBF2 antisense RNA 1	ncRNA
169598	chr3	171028151	171028650	+	0	NA	Intergenic	CpG	-1680	NM_000340	6514		NM_000340	ENSG00000163581	SLC2A2	GLUT2	solute carrier family 2 member 2	protein-coding
98957	chr17	48649101	48649300	+	0	NA	Intergenic	AluSp|SINE|Alu	-16641	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
186879	chr5	139516771	139516950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-34102	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
94562	chr17	29617801	29618650	+	0	NA	promoter-TSS (NM_001351302)	promoter-TSS (NM_001351302)	-108	NM_001351301	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
133994	chr2	130835651	130835950	+	0	NA	Intergenic	Intergenic	-1114	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
116860	chr19	18613801	18614850	+	0	NA	intron (NM_012109, intron 3 of 7)	intron (NM_012109, intron 3 of 7)	1455	NM_012109	25789		NM_012109	ENSG00000105696	TMEM59L	BSMAP|C19orf4	transmembrane protein 59 like	protein-coding
77328	chr15	82510571	82510950	+	0	NA	intron (NR_026811, intron 1 of 7)	intron (NR_026811, intron 1 of 7)	3235	NR_102747	727751		NR_102747		LOC727751	-	golgin A2 pseudogene	pseudo
58848	chr12	132904421	132905750	+	0	NA	Intergenic	Intergenic	17243	NR_110919	101928530		NR_110919	ENSG00000236617	CHFR-DT	-	CHFR divergent transcript	ncRNA
79255	chr16	425091	427130	+	0	NA	exon (NM_014700, exon 1 of 14)	exon (NM_014700, exon 1 of 14)	461	NM_014700	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
220574	chr8	100811651	100812300	+	0	NA	Intergenic	MER51B|LTR|ERV1	-89887	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
217465	chr8	28776921	28777700	+	0	NA	intron (NR_026826, intron 11 of 14)	intron (NR_026826, intron 11 of 14)	75809	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
200485	chr6	135265551	135265650	+	0	NA	Intergenic	Intergenic	26440	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
31711	chr10	97671571	97671930	+	0	NA	intron (NM_018425, intron 8 of 8)	AluSx1|SINE|Alu	15491	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
45787	chr11	119312721	119312980	+	0	NA	TTS (NR_106814)	TTS (NR_106814)	162	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
35719	chr11	1946951	1948230	+	0	NA	intron (NM_021134, intron 1 of 4)	CpG	258	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
141369	chr2	240687671	240688230	+	0	NA	intron (NR_149021, intron 1 of 2)	intron (NR_149021, intron 1 of 2)	1616	NR_149021	285191		NR_149021		LOC285191	-	uncharacterized LOC285191	ncRNA
198279	chr6	99612821	99613990	+	0	NA	exon (NM_021620, exon 4 of 4)	exon (NM_021620, exon 4 of 4)	6572	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
90573	chr17	1526501	1527500	+	0	NA	intron (NM_006224, intron 10 of 11)	AluSx1|SINE|Alu	10081	NR_028514	100306951		NR_028514	ENSG00000236618	PITPNA-AS1	-	PITPNA antisense RNA 1	ncRNA
22223	chr1	212561421	212561900	+	0	NA	Intergenic	Intergenic	-3674	NM_001030287	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
205506	chr7	18174971	18175330	+	0	NA	intron (NM_001321868, intron 2 of 25)	L1PA6|LINE|L1	-47841	NR_031635	100302140		NR_031635	ENSG00000221393	MIR1302-6	MIRN1302-6|hsa-mir-1302-6	microRNA 1302-6	ncRNA
154534	chr22	36152801	36153000	+	0	NA	intron (NM_030644, intron 1 of 4)	AluSp|SINE|Alu	7855	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
74658	chr15	60933751	60934080	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	252346	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
27020	chr10	26843401	26844130	+	0	NA	intron (NM_001178116, intron 1 of 11)	intron (NM_001178116, intron 1 of 11)	17193	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
200618	chr6	136782271	136782830	+	0	NA	intron (NM_005923, intron 1 of 29)	intron (NM_005923, intron 1 of 29)	-1497	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
91968	chr17	7400271	7400830	+	0	NA	intron (NR_037719, intron 2 of 9)	AluY|SINE|Alu	3547	NM_152766	254863		NM_152766	ENSG00000205544	TMEM256	C17orf61	transmembrane protein 256	protein-coding
197325	chr6	73307601	73308430	+	0	NA	intron (NR_027005, intron 2 of 4)	AluSx|SINE|Alu	2144	NM_001251874	80759		NM_030568	ENSG00000135314	KHDC1	C6orf147|C6orf148|Em:AC019205.8|NDG1|bA257K9.4	KH domain containing 1	protein-coding
231926	chr9	133111321	133111880	+	0	NA	intron (NM_001271775, intron 2 of 17)	intron (NM_001271775, intron 2 of 17)	9640	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
176012	chr4	82281021	82281480	+	0	NA	Intergenic	Intergenic	92741	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
58141	chr12	124908101	124908330	+	0	NA	Intergenic	AluYm1|SINE|Alu	6435	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
129555	chr2	69832871	69834000	+	0	NA	intron (NM_178439, intron 1 of 13)	AluSz|SINE|Alu	3775	NM_178439	64395		NM_178439	ENSG00000087338	GMCL1	BTBD13|GCL|GCL1|SPATA29	germ cell-less 1, spermatogenesis associated	protein-coding
24762	chr1	248840551	248841050	+	0	NA	intron (NM_024836, intron 1 of 3)	intron (NM_024836, intron 1 of 3)	2576	NM_024836	79894		NM_024836	ENSG00000171161	ZNF672	-	zinc finger protein 672	protein-coding
203292	chr6	169921671	169922030	+	0	NA	Intergenic	Intergenic	-40773	NR_027434	100131532		NR_027434		LOC100131532	-	uncharacterized LOC100131532	ncRNA
4628	chr1	22113471	22114030	+	0	NA	Intergenic	AluSx1|SINE|Alu	29347	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
343	chr1	1002871	1003050	+	0	NA	Intergenic	Intergenic	-2863	NM_001142467	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
115286	chr19	14565421	14565850	+	0	NA	TTS (NM_004146)	TTS (NM_004146)	6431	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
78501	chr15	92926901	92927300	+	0	NA	intron (NM_001042572, intron 3 of 12)	intron (NM_001042572, intron 3 of 12)	22701	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
47355	chr12	2036251	2036350	+	0	NA	Intergenic	Intergenic	-12052	NR_046768	100874369		NR_046768	ENSG00000151067	CACNA1C-IT2	-	CACNA1C intronic transcript 2	ncRNA
49228	chr12	19173051	19173150	+	0	NA	intron (NM_001256470, intron 3 of 31)	AluYb8|SINE|Alu	-32225	NM_001256787	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
221776	chr8	127926121	127926450	+	0	NA	intron (NR_003367, intron 2 of 8)	intron (NR_003367, intron 2 of 8)	22438	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
165759	chr3	105752351	105753580	+	0	NA	intron (NM_001321799, intron 3 of 16)	intron (NM_001321799, intron 3 of 16)	114626	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
13042	chr1	111230751	111230850	+	0	NA	exon (NM_001025197, exon 2 of 10)	exon (NM_001025197, exon 2 of 10)	1064	NM_001025199	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
195900	chr6	41723351	41723730	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	10070	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
175357	chr4	69823471	69824050	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	36385	NM_005420	6783		NM_005420	ENSG00000109193	SULT1E1	EST|EST-1|ST1E1|STE	sulfotransferase family 1E member 1	protein-coding
143348	chr20	25858071	25858730	+	0	NA	Intergenic	SST1|Satellite|centr	-4379	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
124840	chr2	7742721	7742980	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	156805	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
85560	chr16	53447851	53448150	+	0	NA	intron (NM_001323609, intron 4 of 20)	intron (NM_001323609, intron 4 of 20)	12381	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
2205	chr1	8669671	8670030	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	147790	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
124375	chr19	58379221	58379480	+	0	NA	intron (NM_138466, intron 1 of 2)	intron (NM_138466, intron 1 of 2)	1680	NR_049780	116412		NM_138466	ENSG00000152475	ZNF837	-	zinc finger protein 837	protein-coding
130788	chr2	86853321	86853980	+	0	NA	intron (NM_172213, intron 2 of 5)	MIRb|SINE|MIR	-8175	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
217572	chr8	29465601	29466000	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-115116	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
44625	chr11	108877651	108877780	+	0	NA	intron (NM_004398, intron 16 of 17)	intron (NM_004398, intron 16 of 17)	212646	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
66459	chr14	61552171	61552480	+	0	NA	Intergenic	Intergenic	17869	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
94766	chr17	30824081	30825100	+	0	NA	non-coding (NR_073118, exon 1 of 7)	non-coding (NR_073118, exon 1 of 7)	102	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
57313	chr12	121673971	121674130	+	0	NA	Intergenic	AluSz|SINE|Alu	-1406	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
70210	chr14	100569601	100569880	+	0	NA	promoter-TSS (NM_020836)	promoter-TSS (NM_020836)	52	NM_001385082	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
195650	chr6	37880601	37881000	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	61073	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
233144	chr9	137162351	137163630	+	0	NA	exon (NM_021569, exon 15 of 19)	exon (NM_021569, exon 15 of 19)	6280	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
30420	chr10	78991401	78991600	+	0	NA	intron (NR_015429, intron 3 of 7)	L1ME1|LINE|L1	75948	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
17756	chr1	159015401	159016000	+	0	NA	intron (NM_001376587, intron 2 of 11)	intron (NM_001376587, intron 2 of 11)	5793	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
13554	chr1	115595801	115596080	+	0	NA	Intergenic	Intergenic	-46030	NM_138959	81839		NM_138959	ENSG00000173218	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding
85595	chr16	53513101	53513500	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-9996	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
125479	chr2	12442801	12443000	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	243770	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
82144	chr16	14824651	14825500	+	0	NA	promoter-TSS (NR_023387).2	promoter-TSS (NR_023387).2	-373	NR_023387	730013		NR_023387	ENSG00000290943	ABCC6P2	-	ATP binding cassette subfamily C member 6 pseudogene 2	pseudo
91324	chr17	4370301	4370500	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3726	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
139336	chr2	219570251	219570550	+	0	NA	exon (NM_001173408, exon 1 of 9)	exon (NM_001173408, exon 1 of 9)	1139	NM_001173408	23363		NM_015311	ENSG00000124006	OBSL1	-	obscurin like cytoskeletal adaptor 1	protein-coding
3076	chr1	12185551	12185650	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	-6113	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
63277	chr13	113962901	113963730	+	0	NA	intron (NM_001365455, intron 6 of 6)	intron (NM_001365455, intron 6 of 6)	10761	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
119161	chr19	39395621	39396280	+	0	NA	intron (NM_001317770, intron 3 of 3)	L2b|LINE|L2	4572	NM_001317770	55588		NM_017592	ENSG00000063322	MED29	IXL|MED2	mediator complex subunit 29	protein-coding
73073	chr15	40923071	40923780	+	0	NA	Intergenic	Intergenic	-5915	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
32952	chr10	110416101	110416500	+	0	NA	Intergenic	Charlie15b|DNA|hAT-Charlie	-81607	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
122877	chr19	50506201	50506400	+	0	NA	intron (NM_138334, intron 4 of 4)	intron (NM_138334, intron 4 of 4)	4891	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
39735	chr11	61796671	61798100	+	0	NA	TTS (NM_004111)	TTS (NM_004111)	4474	NM_004111	2237		NM_004111	ENSG00000168496	FEN1	FEN-1|MF1|RAD2	flap structure-specific endonuclease 1	protein-coding
81056	chr16	4321601	4322430	+	0	NA	intron (NM_032575, intron 1 of 6).2	intron (NM_032575, intron 1 of 6).2	5948	NM_032575	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
77964	chr15	89370101	89370580	+	0	NA	intron (NR_133003, intron 1 of 6)	intron (NR_133003, intron 1 of 6)	2241	NR_133003	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
62561	chr13	99955921	99956500	+	0	NA	intron (NR_120421, intron 1 of 4)	CpG	955	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
168544	chr3	146496651	146497030	+	0	NA	promoter-TSS (NM_020359)	promoter-TSS (NM_020359)	-849	NM_001199979	57047		NM_020359	ENSG00000163746	PLSCR2	-	phospholipid scramblase 2	protein-coding
199582	chr6	119076001	119076950	+	0	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	2189	NM_024581	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
184633	chr5	107389051	107389750	+	0	NA	intron (NM_001962, intron 2 of 4)	intron (NM_001962, intron 2 of 4)	281537	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
93189	chr17	17807371	17807900	+	0	NA	intron (NM_030665, intron 4 of 5)	intron (NM_030665, intron 4 of 5)	5910	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
80758	chr16	3160921	3161550	+	0	NA	Intergenic	Intergenic	16944	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
169762	chr3	172581751	172582050	+	0	NA	intron (NR_146714, intron 2 of 3)	MLT1K|LTR|ERVL-MaLR	13707	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
11664	chr1	91814921	91815580	+	0	NA	intron (NR_036634, intron 2 of 17)	AluSx1|SINE|Alu	70901	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
73286	chr15	41863701	41864180	+	0	NA	exon (NM_016642, exon 40 of 68)	exon (NM_016642, exon 40 of 68)	2611	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
186897	chr5	139571271	139571730	+	0	NA	intron (NM_181838, intron 2 of 7)	MIRb|SINE|MIR	10161	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
46203	chr11	123511071	123511530	+	0	NA	intron (NM_001330396, intron 2 of 19)	intron (NM_001330396, intron 2 of 19)	1384	NM_001330396	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
47406	chr12	2880301	2880500	+	0	NA	intron (NR_027365, intron 1 of 1)	AluSx1|SINE|Alu	3177	NM_001257098	83695		NM_001252499	ENSG00000171792	RHNO1	C12orf32|HKMT1188|RHINO	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding
186436	chr5	136034551	136034850	+	0	NA	intron (NM_000358, intron 2 of 16)	intron (NM_000358, intron 2 of 16)	5712	NM_000358	7045		NM_000358	ENSG00000120708	TGFBI	BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1	transforming growth factor beta induced	protein-coding
104091	chr17	80261401	80262450	+	0	NA	intron (NM_020954, intron 1 of 16)	AluSx|SINE|Alu	1073	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
214590	chr7	150648401	150649030	+	0	NA	Intergenic	Intergenic	-16067	NM_001244072	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
173238	chr4	6929301	6929900	+	0	NA	intron (NM_020773, intron 2 of 13)	intron (NM_020773, intron 2 of 13)	19774	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
132487	chr2	105953971	105954330	+	0	NA	Intergenic	LTR16C|LTR|ERVL	102303	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
202489	chr6	158289821	158290390	+	0	NA	Intergenic	AluJr|SINE|Alu	-22360	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
141063	chr2	238259471	238259880	+	0	NA	intron (NM_022817, intron 14 of 22)	intron (NM_022817, intron 14 of 22)	-19637	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
133129	chr2	112663551	112664330	+	0	NA	TTS (NM_005415)	TTS (NM_005415)	18001	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
203127	chr6	166760121	166760580	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	102175	NM_001006932	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
147181	chr20	56483271	56483430	+	0	NA	intron (NM_016407, intron 4 of 8)	AluJr|SINE|Alu	14723	NM_016407	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
174758	chr4	47462821	47464230	+	0	NA	intron (NM_017845, intron 1 of 4)	CpG	177	NM_017845	54951		NM_017845	ENSG00000169019	COMMD8	-	COMM domain containing 8	protein-coding
215316	chr7	157345221	157345550	+	0	NA	intron (NM_001363676, intron 1 of 6)	AluJo|SINE|Alu	8381	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
16060	chr1	153259521	153259780	+	0	NA	promoter-TSS (NM_000427)	promoter-TSS (NM_000427)	-37	NM_000427	4014		NM_000427	ENSG00000203782	LORICRIN	LOR	loricrin cornified envelope precursor protein	protein-coding
192741	chr6	26382971	26384100	+	0	NA	intron (NM_001197237, intron 1 of 7)	intron (NM_001197237, intron 1 of 7)	427	NM_001197238	10385		NM_006995	ENSG00000124508	BTN2A2	BT2.2|BTF2|BTN2.2	butyrophilin subfamily 2 member A2	protein-coding
146538	chr20	49956451	49957950	+	0	NA	Intergenic	Intergenic	20803	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
157180	chr22	43017351	43018080	+	0	NA	Intergenic	Intergenic	-2539	NM_001349969	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
12466	chr1	107850451	107850950	+	0	NA	intron (NM_006113, intron 2 of 26)	L1PA7|LINE|L1	-46523	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
113432	chr19	9799601	9800150	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6695	NR_148545	100505555		NR_148545	ENSG00000196605	LOC100505555	-	uncharacterized LOC100505555	ncRNA
205887	chr7	25110651	25111980	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	13945	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
135889	chr2	171148671	171149030	+	0	NA	intron (NM_001136554, intron 1 of 20)	AluSx|SINE|Alu	12043	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
183254	chr5	76419651	76419950	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	16515	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
184734	chr5	109692201	109692400	+	0	NA	intron (NM_002372, intron 1 of 21)	intron (NM_002372, intron 1 of 21)	2934	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
165931	chr3	107512471	107512630	+	0	NA	Intergenic	Intergenic	-10412	NM_020235	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
160858	chr3	33142551	33142670	+	0	NA	3' UTR (NM_006371, exon 7 of 7)	3' UTR (NM_006371, exon 7 of 7)	28596	NM_006371	10491		NM_006371	ENSG00000170275	CRTAP	CASP|LEPREL3|OI7|P3H5	cartilage associated protein	protein-coding
16095	chr1	153566001	153567580	+	0	NA	promoter-TSS (NM_005978)	promoter-TSS (NM_005978)	-946	NM_001366407	6273		NM_005978	ENSG00000196754	S100A2	CAN19|S100L	S100 calcium binding protein A2	protein-coding
44272	chr11	102279771	102279930	+	0	NA	Intergenic	Intergenic	-37634	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
62292	chr13	98983301	98983700	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-5436	NM_001130050	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
100142	chr17	58515571	58515930	+	0	NA	intron (NM_001378066, intron 2 of 19)	intron (NM_001378066, intron 2 of 19)	-1112	NM_001378067	9110		NM_004687	ENSG00000108389	MTMR4	FYVE-DSP2|ZFYVE11	myotubularin related protein 4	protein-coding
139760	chr2	229925301	229925500	+	0	NA	intron (NM_174899, intron 1 of 3)	intron (NM_174899, intron 1 of 3)	-2220	NM_001348335	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
207691	chr7	45767021	45767280	+	0	NA	intron (NR_024271, intron 1 of 12)	intron (NR_024271, intron 1 of 12)	1868	NR_024271	641977		NR_024271	ENSG00000291207	SEPTIN7P2	SEPT13|SEPT7B|SEPT7P2	septin 7 pseudogene 2	pseudo
151956	chr22	19127501	19127900	+	0	NA	Intergenic	Intergenic	-3608	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
60184	chr13	40271521	40272230	+	0	NA	Intergenic	Intergenic	-51373	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
1700	chr1	5110551	5110880	+	0	NA	Intergenic	LTR39|LTR|ERV1	456106	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
7372	chr1	32870571	32871650	+	0	NA	promoter-TSS (NM_001171940)	promoter-TSS (NM_001171940)	-198	NM_153756	252995		NM_153756	ENSG00000160097	FNDC5	FRCP2|irisin	fibronectin type III domain containing 5	protein-coding
136563	chr2	177616721	177617130	+	0	NA	exon (NM_152275, exon 1 of 1)	exon (NM_152275, exon 1 of 1)	1817	NM_152275	92104		NM_152275	ENSG00000197557	IFT70A	CFAP259|FAP259|TTC30A|TTC30B	intraflagellar transport 70A	protein-coding
57235	chr12	121551301	121552100	+	0	NA	intron (NM_001005366, intron 4 of 22)	AluSz|SINE|Alu	28546	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
81821	chr16	11562851	11564430	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	22733	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
85829	chr16	56999151	57000100	+	0	NA	intron (NR_169520, intron 1 of 47)	intron (NR_169520, intron 1 of 47)	10068	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
215537	chr7	158781601	158781800	+	0	NA	intron (NM_020728, intron 6 of 21)	intron (NM_020728, intron 6 of 21)	47809	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
15874	chr1	151461421	151461680	+	0	NA	Intergenic	L2a|LINE|L2	-2056	NM_001194938	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
99407	chr17	50024121	50024650	+	0	NA	Intergenic	(ATAC)n|Simple_repeat|Simple_repeat	-29161	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
78429	chr15	92733671	92734430	+	0	NA	Intergenic	Intergenic	-61434	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
131038	chr2	88200071	88200750	+	0	NA	Intergenic	Intergenic	30064	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
154086	chr22	30923321	30923580	+	0	NA	intron (NR_026920, intron 1 of 1)	intron (NR_026920, intron 1 of 1)	1142	NR_026920	150291		NM_153044	ENSG00000235989	MORC2-AS1	C22orf27|NCRNA00325	MORC2 antisense RNA 1	ncRNA
44752	chr11	112036001	112036200	+	0	NA	intron (NR_164072, intron 5 of 12)	(AT)n|Simple_repeat|Simple_repeat	10692	NM_001372035	1737		NM_001931	ENSG00000150768	DLAT	DLTA|E2|PBC|PDC-E2|PDCE2	dihydrolipoamide S-acetyltransferase	protein-coding
151606	chr22	11815401	11815830	+	0	NA	Intergenic	ACRO1|Satellite|acro	-81791	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
100099	chr17	58320751	58321250	+	0	NA	intron (NM_001261835, intron 10 of 31)	L2b|LINE|L2	-4450	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
22706	chr1	224065371	224065750	+	0	NA	Intergenic	Intergenic	-48551	NM_015176	23219		NM_015176	ENSG00000143756	FBXO28	CENP-30|DEE100|Fbx28	F-box protein 28	protein-coding
42689	chr11	72639921	72640380	+	0	NA	intron (NM_001243784, intron 1 of 30)	intron (NM_001243784, intron 1 of 30)	2293	NM_001143839	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
32617	chr10	103658971	103659130	+	0	NA	intron (NM_014631, intron 8 of 13)	intron (NM_014631, intron 8 of 13)	19165	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
230097	chr9	127566571	127566880	+	0	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	2348	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
150503	chr21	42833391	42834000	+	0	NA	Intergenic	AluSc|SINE|Alu	45580	NM_001260477	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
139491	chr2	224524851	224525150	+	0	NA	intron (NM_003590, intron 3 of 15)	L1MEg|LINE|L1	44955	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
192412	chr6	24855701	24856300	+	0	NA	intron (NM_001286447, intron 8 of 13)	AluJo|SINE|Alu	21270	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
221749	chr8	127740371	127740980	+	0	NA	exon (NM_002467, exon 3 of 3)	exon (NM_002467, exon 3 of 3)	4444	NM_002467	4609		NM_002467	ENSG00000136997	MYC	MRTL|MYCC|bHLHe39|c-Myc	MYC proto-oncogene, bHLH transcription factor	protein-coding
81128	chr16	4389901	4390100	+	0	NA	intron (NM_001351729, intron 7 of 27)	intron (NM_001351729, intron 7 of 27)	18152	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
92348	chr17	8174751	8175080	+	0	NA	intron (NM_001351278, intron 3 of 4)	intron (NM_001351278, intron 3 of 4)	-1327	NR_033294	727676		NR_033294	ENSG00000200463	SNORD118	LCC|U8	small nucleolar RNA, C/D box 118	snoRNA
38219	chr11	36411121	36412200	+	0	NA	intron (NM_001160167, intron 3 of 8)	Charlie15a|DNA|hAT-Charlie	10663	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
205381	chr7	14457851	14458180	+	0	NA	intron (NM_001350707, intron 21 of 25)	intron (NM_001350707, intron 21 of 25)	383435	NM_145695	1607		NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding
197541	chr6	79045921	79046200	+	0	NA	intron (NM_017934, intron 6 of 39)	L2a|LINE|L2	32194	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
48287	chr12	8947451	8947950	+	0	NA	intron (NM_002355, intron 1 of 6)	MIR|SINE|MIR	1945	NM_002355	4074		NM_002355	ENSG00000003056	M6PR	CD-M6PR|CD-MPR|MPR 46|MPR-46|MPR46|SMPR	mannose-6-phosphate receptor, cation dependent	protein-coding
51000	chr12	49656121	49656580	+	0	NA	intron (NM_175736, intron 9 of 25)	intron (NM_175736, intron 9 of 25)	32789	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
63757	chr14	21243851	21244280	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluSq|SINE|Alu	25377	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
144206	chr20	34324551	34325030	+	0	NA	Intergenic	L2a|LINE|L2	-12988	NM_001161766	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
219003	chr8	63179651	63179750	+	0	NA	intron (NR_102434, intron 3 of 3)	SVA_D|Retroposon|SVA	10697	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
77098	chr15	78923651	78924600	+	0	NA	intron (NM_001319137, intron 11 of 12)	G-rich|Low_complexity|Low_complexity	20921	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
130294	chr2	84904421	84906500	+	0	NA	promoter-TSS (NM_021103)	promoter-TSS (NM_021103)	-196	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
149142	chr21	17788801	17789300	+	0	NA	TTS (NM_001100420)	TTS (NM_001100420)	3459	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
181819	chr5	52775801	52776520	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-11756	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
27365	chr10	30749701	30750100	+	0	NA	Intergenic	Intergenic	26681	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
106701	chr18	23411751	23412080	+	0	NA	intron (NR_148382, intron 1 of 12)	intron (NR_148382, intron 1 of 12)	26046	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
56604	chr12	118060441	118063330	+	0	NA	promoter-TSS (NM_018639)	promoter-TSS (NM_018639)	289	NM_001278557	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
209519	chr7	77003701	77003900	+	0	NA	intron (NR_023383, intron 4 of 10)	intron (NR_023383, intron 4 of 10)	22978	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
139517	chr2	224563501	224563700	+	0	NA	intron (NM_003590, intron 1 of 15)	Tigger7|DNA|TcMar-Tigger	6355	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
4206	chr1	19451951	19452550	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	32045	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
93387	chr17	18263071	18263230	+	0	NA	exon (NM_139162, exon 3 of 4)	exon (NM_139162, exon 3 of 4)	2040	NM_148886	125170		NM_139162	ENSG00000177427	MIEF2	COXPD49|D3B|MID49|SMCR7	mitochondrial elongation factor 2	protein-coding
170074	chr3	182925471	182925630	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	54988	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
81783	chr16	11527871	11528480	+	0	NA	promoter-TSS (NM_001370704)	promoter-TSS (NM_001370704)	-928	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
188889	chr5	159939251	159939350	+	0	NA	intron (NM_000679, intron 1 of 1)	(GT)n|Simple_repeat|Simple_repeat	22818	NM_000679	147		NM_000679	ENSG00000170214	ADRA1B	ADRA1|ALPHA1BAR	adrenoceptor alpha 1B	protein-coding
186391	chr5	135040421	135041100	+	0	NA	promoter-TSS (NR_105049)	promoter-TSS (NR_105049)	-713	NR_105050	101927953		NR_105049	ENSG00000249082	EPIST	C5orf66-AS1	esophagus epithelial intergenic associated transcript	ncRNA
76442	chr15	74804951	74805500	+	0	NA	Intergenic	AluJo|SINE|Alu	-7610	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
92702	chr17	14119051	14119350	+	0	NA	intron (NM_001303, intron 4 of 6)	intron (NM_001303, intron 4 of 6)	49696	NM_001303	1352		NM_001303	ENSG00000006695	COX10	MC4DN3	cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10	protein-coding
228647	chr9	107174051	107174150	+	0	NA	Intergenic	Intergenic	-71112	NR_126029	340512		NR_126029	ENSG00000230782	LOC340512	-	uncharacterized LOC340512	ncRNA
149099	chr21	16284651	16284750	+	0	NA	promoter-TSS (NR_145757)	promoter-TSS (NR_145757)	68	NR_145757	109617014		NR_145757	ENSG00000201025	SNORD74B	-	small nucleolar RNA, C/D box 74B	snoRNA
198246	chr6	99397151	99397850	+	0	NA	TTS (NR_136326)	TTS (NR_136326)	-3305	NM_017421	51805		NM_017421	ENSG00000132423	COQ3	DHHBMT|DHHBMTASE|UG0215E05|bA9819.1	coenzyme Q3, methyltransferase	protein-coding
27390	chr10	31146371	31146730	+	0	NA	Intergenic	Intergenic	-41333	NR_134478	101929352		NR_134478		LINC02664	-	long intergenic non-protein coding RNA 2664	ncRNA
88980	chr16	87877801	87878180	+	0	NA	Intergenic	MIRc|SINE|MIR	-8483	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
25045	chr10	3770151	3770250	+	0	NA	Intergenic	Intergenic	15009	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
223768	chr8	144531251	144531750	+	0	NA	intron (NM_001308207, intron 10 of 11)	intron (NM_001308207, intron 10 of 11)	-2389	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
122371	chr19	49361901	49362500	+	0	NA	promoter-TSS (NM_001256661)	promoter-TSS (NM_001256661)	216	NM_001256660	8463		NM_003598	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain transcription factor 2	protein-coding
108372	chr18	68716471	68716830	+	0	NA	intron (NM_001093729, intron 2 of 9)	Charlie5|DNA|hAT-Charlie	1434	NM_001093729	79839		NM_024781	ENSG00000150636	CCDC102B	ACY1L|AN|C18orf14|HsT1731	coiled-coil domain containing 102B	protein-coding
80278	chr16	2237601	2238350	+	0	NA	exon (NM_001301680, exon 6 of 7)	exon (NM_001301680, exon 6 of 7)	1531	NM_001301680	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
226512	chr9	71822371	71822930	+	0	NA	Intergenic	LTR49|LTR|ERV1	-54137	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
200992	chr6	139530751	139531480	+	0	NA	Intergenic	Intergenic	-56519	NR_033919	645434		NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA
180604	chr5	16455871	16457880	+	0	NA	intron (NM_033414, intron 4 of 5)	intron (NM_033414, intron 4 of 5)	8925	NM_033414	90441		NM_033414	ENSG00000173545	ZNF622	ZPR9	zinc finger protein 622	protein-coding
175851	chr4	78938451	78939980	+	0	NA	exon (NM_001040202, exon 1 of 6)	exon (NM_001040202, exon 1 of 6)	223	NR_146464	152559		NM_177453	ENSG00000163291	PAQR3	RKTG	progestin and adipoQ receptor family member 3	protein-coding
212772	chr7	129958601	129958850	+	0	NA	Intergenic	Intergenic	-5765	NM_001202498	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
170938	chr3	194322621	194323200	+	0	NA	Intergenic	Intergenic	-10106	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
96665	chr17	40726901	40727400	+	0	NA	Intergenic	MIRc|SINE|MIR	-23398	NM_019016	192666		NM_019016	ENSG00000167916	KRT24	CK-24|K24|KA24	keratin 24	protein-coding
17083	chr1	156129951	156131280	+	0	NA	intron (NM_001282624, intron 2 of 10)	intron (NM_001282624, intron 2 of 10)	4445	NM_001257374	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
46726	chr11	128903651	128904150	+	0	NA	intron (NR_169215, intron 2 of 3)	intron (NR_169215, intron 2 of 3)	1809	NR_169216	219833		NM_145013	ENSG00000174370	KCNJ5-AS1	C11orf45	KCNJ5 antisense RNA 1	ncRNA
53548	chr12	67469351	67469850	+	0	NA	Intergenic	L1MA1|LINE|L1	-27041	NR_146500	102724433		NR_146500	ENSG00000256172	LINC02420	-	long intergenic non-protein coding RNA 2420	ncRNA
121724	chr19	47701001	47701200	+	0	NA	intron (NM_015711, intron 14 of 14)	intron (NM_015711, intron 14 of 14)	-12322	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
219309	chr8	70088071	70089180	+	0	NA	Intergenic	LTR41|LTR|ERVL	-17373	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
115764	chr19	16333801	16336100	+	0	NA	Intergenic	AluSz|SINE|Alu	10124	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
142883	chr20	17878921	17879180	+	0	NA	Intergenic	L1ME2z|LINE|L1	83896	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
145414	chr20	41734421	41734700	+	0	NA	Intergenic	Intergenic	-116183	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
122658	chr19	49862571	49863350	+	0	NA	intron (NM_007254, intron 8 of 16)	CpG-14959	-3671	NR_110730	101928378		NR_110730		PTOV1-AS2	-	PTOV1 antisense RNA 2	ncRNA
1319	chr1	2408551	2409000	+	0	NA	exon (NM_153818, exon 3 of 6)	exon (NM_153818, exon 3 of 6)	3789	NM_002617	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
180954	chr5	35618971	35619130	+	0	NA	intron (NM_144722, intron 1 of 9)	intron (NM_144722, intron 1 of 9)	1187	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
237195	chrX	107777101	107777590	+	0	NA	promoter-TSS (NM_001348372)	promoter-TSS (NM_001348372)	-388	NM_001348372	392517		NM_001348372	ENSG00000170935	NCBP2L	dJ820B18.1	nuclear cap binding protein subunit 2 like	protein-coding
17276	chr1	156422871	156423380	+	0	NA	intron (NR_168071, intron 2 of 4)	intron (NR_168071, intron 2 of 4)	-1356	NR_135268	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
105211	chr17	82328021	82328530	+	0	NA	intron (NM_003004, intron 1 of 4)	intron (NM_003004, intron 1 of 4)	5491	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
96690	chr17	41328101	41328500	+	0	NA	Intergenic	Intergenic	-12590	NM_031964	83902		NM_031964	ENSG00000186860	KRTAP17-1	KAP17.1|KRTAP16.1|KRTAP17.1	keratin associated protein 17-1	protein-coding
16473	chr1	154625871	154626230	+	0	NA	intron (NM_001365046, intron 1 of 15)	AluSz|SINE|Alu	1921	NM_001025107	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
16325	chr1	154220101	154222380	+	0	NA	promoter-TSS (NM_001375631)	promoter-TSS (NM_001375631)	-64	NM_001375619	9898		NM_014847	ENSG00000143569	UBAP2L	NEDLBF|NICE-4|NICE4	ubiquitin associated protein 2 like	protein-coding
196853	chr6	47548051	47548150	+	0	NA	intron (NM_012120, intron 4 of 17)	L1PB1|LINE|L1	70311	NM_012120	23607		NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
149393	chr21	31146971	31147500	+	0	NA	intron (NM_001353694, intron 19 of 27)	intron (NM_001353694, intron 19 of 27)	13705	NM_001353684	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
223796	chr8	144767351	144768330	+	0	NA	Intergenic	Intergenic	-12309	NM_138367	90987		NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding
12280	chr1	100538401	100538600	+	0	NA	5' UTR (NM_022049, exon 1 of 2)	5' UTR (NM_022049, exon 1 of 2)	361	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
122908	chr19	50569871	50570030	+	0	NA	Intergenic	Intergenic	-1515	NM_001080457	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
79614	chr16	1096001	1096200	+	0	NA	intron (NM_207419, intron 1 of 4)	intron (NM_207419, intron 1 of 4)	144	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
160677	chr3	32238071	32239180	+	0	NA	promoter-TSS (NM_001320308)	promoter-TSS (NM_001320308)	-54	NM_001320308	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
91094	chr17	3639021	3639280	+	0	NA	intron (NM_001374494, intron 2 of 10)	intron (NM_001374494, intron 2 of 10)	2390	NM_004937	1497		NM_004937	ENSG00000040531	CTNS	CTNS-LSB|PQLC4|SLC66A4	cystinosin, lysosomal cystine transporter	protein-coding
201272	chr6	144217551	144218000	+	0	NA	Intergenic	L1MC4|LINE|L1	67258	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
115663	chr19	16137721	16137980	+	0	NA	intron (NR_163150, intron 1 of 7)	AluJb|SINE|Alu	3822	NR_111903	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
194745	chr6	33874871	33875030	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	21957	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
54897	chr12	95947601	95948200	+	0	NA	intron (NM_152435, intron 1 of 8)	SVA_F|Retroposon|SVA	4569	NM_152435	144193		NM_152435	ENSG00000139344	AMDHD1	HMFT1272	amidohydrolase domain containing 1	protein-coding
121623	chr19	47432321	47432580	+	0	NA	intron (NM_015063, intron 8 of 9)	intron (NM_015063, intron 8 of 9)	-10217	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
73801	chr15	48352451	48352750	+	0	NA	Intergenic	MIR3|SINE|MIR	20403	NM_001948	1854		NM_001948	ENSG00000128951	DUT	BMFDMS|dUTPase	deoxyuridine triphosphatase	protein-coding
73495	chr15	43754071	43754500	+	0	NA	intron (NM_005313, intron 2 of 12)	AluSc|SINE|Alu	7847	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
234893	chrX	30825751	30826130	+	0	NA	Intergenic	Intergenic	-8683	NR_145449	727682		NR_145449		TAB3-AS1	CXorf29	TAB3 antisense RNA 1	ncRNA
236637	chrX	74611301	74612150	+	0	NA	intron (NM_016120, intron 1 of 3)	intron (NM_016120, intron 1 of 3)	2899	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
182180	chr5	56700221	56700930	+	0	NA	Intergenic	Intergenic	72296	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
79775	chr16	1373401	1373600	+	0	NA	intron (NM_001372107, intron 10 of 14)	intron (NM_001372107, intron 10 of 14)	6152	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
106639	chr18	22556871	22557230	+	0	NA	Intergenic	Intergenic	-139135	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
175965	chr4	81460301	81460700	+	0	NA	intron (NM_001300736, intron 1 of 12)	intron (NM_001300736, intron 1 of 12)	11407	NM_152545	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
120526	chr19	44889371	44889530	+	0	NA	TTS (NM_001042724)	TTS (NM_001042724)	-1770	NM_001128916	10452		NM_006114	ENSG00000130204	TOMM40	C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40	translocase of outer mitochondrial membrane 40	protein-coding
137945	chr2	201126571	201127090	+	0	NA	intron (NR_147255, intron 1 of 4)	intron (NR_147255, intron 1 of 4)	-2135	NM_001308042	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
8170	chr1	39525501	39526930	+	0	NA	3' UTR (NM_181809, exon 7 of 7)	3' UTR (NM_181809, exon 7 of 7)	11349	NR_132962	192217		NR_132962	ENSG00000237624	OXCT2P1	OXCT2P	3-oxoacid CoA-transferase 2 pseudogene 1	pseudo
180703	chr5	21496871	21497230	+	0	NA	non-coding (NR_027028, exon 6 of 6).2	non-coding (NR_027028, exon 6 of 6).2	37570	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
73108	chr15	41115411	41117230	+	0	NA	promoter-TSS (NM_017553)	promoter-TSS (NM_017553)	-40	NM_017553	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
52587	chr12	56185271	56185780	+	0	NA	intron (NM_003075, intron 3 of 27)	AluSx1|SINE|Alu	3958	NM_001130420	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
33033	chr10	110805301	110805500	+	0	NA	intron (NM_001134363, intron 7 of 13)	intron (NM_001134363, intron 7 of 13)	65504	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
148705	chr21	6468801	6469000	+	0	NA	promoter-TSS (NM_001178008)	promoter-TSS (NM_001178008)	-279	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
14402	chr1	144263171	144263530	+	0	NA	Intergenic	Intergenic	-13053	NR_027355	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
156842	chr22	41956451	41957030	+	0	NA	intron (NR_024355, intron 1 of 1)	MIRb|SINE|MIR	4553	NR_024355								
102095	chr17	74976721	74976980	+	0	NA	Intergenic	Intergenic	-4091	NM_030630	283987		NM_030630	ENSG00000167861	HID1	17orf28|C17orf28|DEE105|DMC1|HID-1	HID1 domain containing	protein-coding
73460	chr15	43488151	43488450	+	0	NA	intron (NM_001355001, intron 4 of 28)	AluJo|SINE|Alu	4856	NM_001141980	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
100393	chr17	60165921	60166180	+	0	NA	intron (NR_137422, intron 8 of 11)	intron (NR_137422, intron 8 of 11)	16077	NM_000717	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
18854	chr1	167721471	167722670	+	0	NA	promoter-TSS (NM_003953)	promoter-TSS (NM_003953)	88	NM_024569	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
171147	chr3	195586501	195587450	+	0	NA	Intergenic	Intergenic	-3035	NM_001647	347		NM_001647	ENSG00000189058	APOD	-	apolipoprotein D	protein-coding
36744	chr11	9280521	9281280	+	0	NA	non-coding (NR_028491, exon 8 of 8)	non-coding (NR_028491, exon 8 of 8)	-15550	NM_015213	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
131974	chr2	100178151	100178250	+	0	NA	Intergenic	MER66C|LTR|ERV1	-30054	NR_103730	150577		NM_001102655	ENSG00000232084	LINC01104	-	long intergenic non-protein coding RNA 1104	ncRNA
129632	chr2	70132151	70133050	+	0	NA	Intergenic	Intergenic	-7284	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
208973	chr7	74199901	74200450	+	0	NA	Intergenic	FLAM_C|SINE|Alu	8977	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
125446	chr2	12056201	12056600	+	0	NA	intron (NR_110196, intron 2 of 5)	intron (NR_110196, intron 2 of 5)	49284	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
230891	chr9	129220851	129221800	+	0	NA	Intergenic	Intergenic	-43064	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
191972	chr6	16151021	16151500	+	0	NA	Intergenic	AluYk2|SINE|Alu	9704	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
157705	chr22	46377021	46377280	+	0	NA	exon (NM_014246, exon 24 of 35)	exon (NM_014246, exon 24 of 35)	41436	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
123452	chr19	54145201	54145830	+	0	NA	intron (NM_014516, intron 7 of 17).8	intron (NM_014516, intron 7 of 17).8	7753	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
68582	chr14	89437271	89437630	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	20096	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
232430	chr9	136099601	136099930	+	0	NA	Intergenic	Intergenic	-4476	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
165904	chr3	106338251	106339350	+	0	NA	Intergenic	Intergenic	-469399	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
184701	chr5	109297901	109298100	+	0	NA	intron (NR_149040, intron 3 of 3)	intron (NR_149040, intron 3 of 3)	28369	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
108168	chr18	62873951	62874480	+	0	NA	intron (NM_194449, intron 4 of 16)	MER6A|DNA|TcMar-Tigger	158674	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
5629	chr1	26168421	26168850	+	0	NA	promoter-TSS (NM_001364667)	promoter-TSS (NM_001364667)	-53	NM_001364667	110806296		NM_001364667	ENSG00000282872	C1orf232	-	chromosome 1 open reading frame 230	protein-coding
94641	chr17	30115051	30115780	+	0	NA	Intergenic	L1MEc|LINE|L1	-1392	NM_001261467	84081		NM_032141	ENSG00000126653	NSRP1	CCDC55|HSPC095|NEDSSBA|NSrp70	nuclear speckle splicing regulatory protein 1	protein-coding
48872	chr12	12465751	12466580	+	0	NA	3' UTR (NM_001300742, exon 4 of 4).2	3' UTR (NM_001300742, exon 4 of 4).2	96698	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
215016	chr7	152391501	152391700	+	0	NA	intron (NM_170606, intron 1 of 58)	AluSg|SINE|Alu	44403	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
91676	chr17	5564601	5564800	+	0	NA	intron (NM_014922, intron 3 of 15)	L1MA1|LINE|L1	19809	NM_001033053	22861		NM_014922	ENSG00000091592	NLRP1	AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|JRRP|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
55797	chr12	108647351	108647530	+	0	NA	exon (NM_001276471, exon 11 of 11)	exon (NM_001276471, exon 11 of 11)	11630	NR_039717	100616240		NR_039717	ENSG00000284388	MIR4496	-	microRNA 4496	ncRNA
152932	chr22	22804801	22805330	+	0	NA	Intergenic	AluSz6|SINE|Alu	-17711	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
105830	chr18	2978151	2979080	+	0	NA	intron (NM_001375808, intron 1 of 19)	L1MC4a|LINE|L1	-31992	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
198273	chr6	99604701	99606000	+	0	NA	Intergenic	Intergenic	-1483	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
165654	chr3	101833621	101834300	+	0	NA	intron (NM_001005474, intron 2 of 12)	intron (NM_001005474, intron 2 of 12)	5970	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
68318	chr14	77459271	77460330	+	0	NA	exon (NM_012111, exon 2 of 9)	exon (NM_012111, exon 2 of 9)	1707	NM_012111	10598		NM_012111	ENSG00000100591	AHSA1	AHA1|C14orf3|hAha1|p38	activator of HSP90 ATPase activity 1	protein-coding
141363	chr2	240640421	240641630	+	0	NA	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	15780	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
60745	chr13	44537351	44537530	+	0	NA	intron (NM_183422, intron 1 of 2)	intron (NM_183422, intron 1 of 2)	-38456	NR_038381	641467		NR_038381	ENSG00000278156	TSC22D1-AS1	-	TSC22D1 antisense RNA 1	ncRNA
104391	chr17	81038571	81040230	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	4249	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
159958	chr3	17322321	17322780	+	0	NA	intron (NM_001349090, intron 13 of 21)	L1MEc|LINE|L1	377470	NM_001134381	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
47436	chr12	3313521	3313880	+	0	NA	intron (NR_148995, intron 1 of 11)	intron (NR_148995, intron 1 of 11)	52422	NR_148995	100128253		NR_148995		LOC100128253	-	uncharacterized LOC100128253	ncRNA
15985	chr1	151945581	151947480	+	0	NA	Intergenic	Intergenic	-37019	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
161825	chr3	45630521	45630780	+	0	NA	intron (NM_014240, intron 1 of 7)	intron (NM_014240, intron 1 of 7)	35899	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
46233	chr11	124636421	124636750	+	0	NA	TTS (NM_032811)	TTS (NM_032811)	13721	NR_016021	84897		NM_032811	ENSG00000154144	TBRG1	NIAM|TB-5	transforming growth factor beta regulator 1	protein-coding
216615	chr8	22087701	22088030	+	0	NA	Intergenic	AluJo|SINE|Alu	-1285	NR_148728	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
33871	chr10	124414171	124414330	+	0	NA	5' UTR (NM_001322966, exon 2 of 11)	5' UTR (NM_001322966, exon 2 of 11)	4673	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
190127	chr5	178006471	178007750	+	0	NA	promoter-TSS (NR_149722)	promoter-TSS (NR_149722)	-582	NR_149722	653316		NM_001079527	ENSG00000204677	FAM153CP	FAM153C|NY-REN-7-like	protein FAM153C	pseudo
39705	chr11	61748571	61749100	+	0	NA	Intergenic	Intergenic	-3801	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
187164	chr5	140568471	140568630	+	0	NA	3' UTR (NM_080670, exon 3 of 3)	3' UTR (NM_080670, exon 3 of 3)	-3946	NM_133174	10307		NM_006051	ENSG00000113108	APBB3	FE65L2|SRA	amyloid beta precursor protein binding family B member 3	protein-coding
185977	chr5	133240471	133240630	+	0	NA	intron (NM_015082, intron 7 of 15)	intron (NM_015082, intron 7 of 15)	187156	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
120220	chr19	42306351	42307550	+	0	NA	intron (NM_199285, intron 1 of 2)	CpG	-4150	NM_001145940	5050		NM_002573	ENSG00000079462	PAFAH1B3	PAFAHG	platelet activating factor acetylhydrolase 1b catalytic subunit 3	protein-coding
67843	chr14	73951271	73951430	+	0	NA	intron (NM_182476, intron 1 of 11)	L1MB8|LINE|L1	1048	NM_182476	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
216488	chr8	20184721	20185080	+	0	NA	Intergenic	LTR88a|LTR|Gypsy?	-1694	NM_001142325	6570		NM_003053	ENSG00000036565	SLC18A1	CGAT|VAT1|VMAT1	solute carrier family 18 member A1	protein-coding
33178	chr10	113060401	113060600	+	0	NA	intron (NM_001363501, intron 5 of 13)	intron (NM_001363501, intron 5 of 13)	15145	NR_132769	106635520		NR_132769		SNORA87	-	small nucleolar RNA, H/ACA box 87	snoRNA
159608	chr3	15253201	15253800	+	0	NA	promoter-TSS (NR_046084)	promoter-TSS (NR_046084)	-684	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
165753	chr3	105746201	105746400	+	0	NA	intron (NM_001321811, intron 4 of 16)	intron (NM_001321811, intron 4 of 16)	121291	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
139036	chr2	218516621	218516910	+	0	NA	intron (NM_020935, intron 10 of 25)	L1MC4a|LINE|L1	51586	NM_020935	57695		NM_020935	ENSG00000135913	USP37	-	ubiquitin specific peptidase 37	protein-coding
21672	chr1	206702321	206702750	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	17630	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
92474	chr17	8742551	8743080	+	0	NA	intron (NM_144681, intron 3 of 6)	MER5A|DNA|hAT-Charlie	2021	NM_144681	146849		NM_144681	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
70629	chr14	102819221	102820250	+	0	NA	intron (NM_001199427, intron 1 of 7)	MER46C|DNA|TcMar-Tigger	42256	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
161547	chr3	42656521	42656950	+	0	NA	intron (NM_145166, intron 1 of 5)	intron (NM_145166, intron 1 of 5)	-2347	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
235515	chrX	47191401	47192250	+	0	NA	intron (NM_153280, intron 1 of 25)	intron (NM_153280, intron 1 of 25)	978	NM_153280	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
131790	chr2	98503651	98504230	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	57930	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
184639	chr5	107449471	107449630	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	221387	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
193485	chr6	30547001	30547430	+	0	NA	exon (NM_005275, exon 10 of 12)	exon (NM_005275, exon 10 of 12)	-9494	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
218822	chr8	59114751	59115050	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	4247	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
114407	chr19	12643471	12643830	+	0	NA	Intergenic	Intergenic	23092	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
193618	chr6	30745351	30745700	+	0	NA	promoter-TSS (NM_003897).2	promoter-TSS (NM_003897).2	-978	NM_003897	8870		NM_003897	ENSG00000137331	IER3	DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1	immediate early response 3	protein-coding
125473	chr2	12412901	12413700	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	214170	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
124075	chr19	55616051	55616500	+	0	NA	exon (NM_001195605, exon 2 of 2)	exon (NM_001195605, exon 2 of 2)	8291	NM_203374	147808		NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
208946	chr7	74176921	74177380	+	0	NA	intron (NM_022170, intron 1 of 6)	AluJb|SINE|Alu	2794	NM_022170	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
34443	chr10	132422951	132423580	+	0	NA	Intergenic	Intergenic	-21924	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
175057	chr4	53877551	53877650	+	0	NA	Intergenic	L1PA2|LINE|L1	109682	NR_027153	402176		NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo
143048	chr20	21324951	21325430	+	0	NA	intron (NM_001317960, intron 1 of 29)	intron (NM_001317960, intron 1 of 29)	21692	NM_001317960	22803		NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
166682	chr3	120347001	120347430	+	0	NA	intron (NM_001099678, intron 1 of 3)	L2a|LINE|L2	2139	NM_001099678	116064		NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
20175	chr1	193031421	193031680	+	0	NA	intron (NM_001350842, intron 3 of 11)	intron (NM_001350842, intron 3 of 11)	25865	NR_135615	107397392		NR_135615	ENSG00000238754	SCARNA18B	-	small Cajal body-specific RNA 18B	ncRNA
131461	chr2	96343651	96344550	+	0	NA	intron (NM_001281711, intron 5 of 17)	intron (NM_001281711, intron 5 of 17)	8334	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
190292	chr5	179590871	179591530	+	0	NA	intron (NM_001040452, intron 9 of 17).2	AluY|SINE|Alu	12541	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
50826	chr12	49101301	49101830	+	0	NA	intron (NM_001352161, intron 11 of 16)	intron (NM_001352161, intron 11 of 16)	-6764	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
27943	chr10	42076851	42077150	+	0	NA	Intergenic	Intergenic	291045	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
78531	chr15	92951351	92952030	+	0	NA	intron (NM_001271, intron 13 of 38)	intron (NM_001271, intron 13 of 38)	47291	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
13890	chr1	119323751	119323850	+	0	NA	Intergenic	Intergenic	-4452	NR_146623	105378934		NR_146623	ENSG00000232650	LINC01780	-	long intergenic non-protein coding RNA 1780	ncRNA
36185	chr11	3219271	3219430	+	0	NA	promoter-TSS (NM_001164377)	promoter-TSS (NM_001164377)	-537	NM_001164377	386746		NM_001164377	ENSG00000182170	MRGPRG	GPR169|MRGG	MAS related GPR family member G	protein-coding
163772	chr3	52380271	52380850	+	0	NA	intron (NM_015512, intron 48 of 77)	intron (NM_015512, intron 48 of 77)	29448	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
144500	chr20	35666451	35666650	+	0	NA	Intergenic	AluJr|SINE|Alu	-1650	NM_152927	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
138808	chr2	216170251	216170550	+	0	NA	intron (NM_021141, intron 16 of 20)	intron (NM_021141, intron 16 of 20)	-46489	NR_037701	150967		NM_001199924	ENSG00000260804	LINC01963	PKI55	long intergenic non-protein coding RNA 1963	ncRNA
19218	chr1	172534771	172534930	+	0	NA	intron (NM_001282751, intron 1 of 21)	intron (NM_001282751, intron 1 of 21)	1700	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
45852	chr11	119421971	119422150	+	0	NA	5' UTR (NM_001311160, exon 1 of 4)	5' UTR (NM_001311160, exon 1 of 4)	502	NM_001311160	7070		NM_006288	ENSG00000154096	THY1	CD90|CDw90	Thy-1 cell surface antigen	protein-coding
119535	chr19	40578301	40579250	+	0	NA	intron (NM_138392, intron 6 of 17)	intron (NM_138392, intron 6 of 17)	1902	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
132414	chr2	105808521	105809950	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	-42612	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
135883	chr2	171102871	171103230	+	0	NA	intron (NM_012290, intron 2 of 20)	intron (NM_012290, intron 2 of 20)	-36077	NM_001136555	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
176312	chr4	87423821	87424350	+	0	NA	intron (NM_024047, intron 1 of 7)	intron (NM_024047, intron 1 of 7)	1488	NM_198038	53343		NM_024047	ENSG00000170502	NUDT9	NUDT10	nudix hydrolase 9	protein-coding
108196	chr18	63107571	63107730	+	0	NA	Intergenic	Intergenic	212119	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
208690	chr7	73237401	73237930	+	0	NA	Intergenic	AluJr|SINE|Alu	17026	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
197025	chr6	53334001	53334330	+	0	NA	TTS (NR_046241)	TTS (NR_046241)	3452	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
54248	chr12	82725851	82725950	+	0	NA	intron (NM_001320321, intron 1 of 10)	MER4E1|LTR|ERV1	38745	NM_001320322	160335		NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane O-mannosyltransferase targeting cadherins 2	protein-coding
13865	chr1	117734001	117734500	+	0	NA	Intergenic	Intergenic	128202	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
14615	chr1	145418401	145418600	+	0	NA	Intergenic	L1MC2|LINE|L1	-12722	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
187505	chr5	142353801	142354530	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	28872	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
141069	chr2	238268051	238268350	+	0	NA	intron (NM_022817, intron 7 of 22)	intron (NM_022817, intron 7 of 22)	20410	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
198540	chr6	106549901	106550300	+	0	NA	intron (NM_001371242, intron 13 of 21)	L2b|LINE|L2	38245	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
205814	chr7	24571401	24571680	+	0	NA	Intergenic	Intergenic	-1912	NM_016447	51678		NM_016447	ENSG00000105926	PALS2	MPP6|VAM-1|VAM1|p55T	protein associated with LIN7 2, MAGUK p55 family member	protein-coding
202483	chr6	158257651	158257950	+	0	NA	Intergenic	Intergenic	-54665	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
113171	chr19	8394751	8395880	+	0	NA	intron (NM_004218, intron 1 of 4)	AluSz|SINE|Alu	-4624	NR_038237	100507567		NR_038237	ENSG00000269386	RAB11B-AS1	MIR4999HG	RAB11B antisense RNA 1	ncRNA
14774	chr1	146047251	146047750	+	0	NA	Intergenic	AluY|SINE|Alu	4744	NR_104085	101954276		NR_104085	ENSG00000201558	RNVU1-6	RNU1-99|vU1.6	RNA, variant U1 small nuclear 6	snRNA
21225	chr1	204149701	204150180	+	0	NA	exon (NM_018208, exon 2 of 8)	exon (NM_018208, exon 2 of 8)	2104	NM_001297760	55224		NM_018208	ENSG00000143845	ETNK2	EKI2|HMFT1716	ethanolamine kinase 2	protein-coding
84729	chr16	30927171	30927350	+	0	NA	intron (NM_001382781, intron 2 of 10)	intron (NM_001382781, intron 2 of 10)	2685	NM_001099784	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
133123	chr2	112656951	112657400	+	0	NA	exon (NM_005415, exon 6 of 11)	exon (NM_005415, exon 6 of 11)	11236	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
59645	chr13	28162721	28162980	+	0	NA	intron (NM_175854, intron 1 of 18)	FRAM|SINE|Alu	-23676	NR_029383	100288730		NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
154501	chr22	35692821	35693330	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-24797	NM_030642	80831		NM_030642	ENSG00000128313	APOL5	APOL-V|APOLV	apolipoprotein L5	protein-coding
236186	chrX	65656421	65657180	+	0	NA	Intergenic	Intergenic	-10854	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
229778	chr9	125230001	125230500	+	0	NA	intron (NM_001174153, intron 6 of 7)	AluJb|SINE|Alu	11093	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
50051	chr12	44551701	44551900	+	0	NA	intron (NM_001145108, intron 15 of 19)	intron (NM_001145108, intron 15 of 19)	323861	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
52699	chr12	56522501	56523000	+	0	NA	intron (NM_002898, intron 1 of 13)	intron (NM_002898, intron 1 of 13)	930	NM_002898	5939		NM_002898	ENSG00000076067	RBMS2	SCR3	RNA binding motif single stranded interacting protein 2	protein-coding
136680	chr2	181106171	181106330	+	0	NA	Intergenic	Intergenic	-17587	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
148180	chr20	63541801	63542230	+	0	NA	intron (NM_080823, intron 5 of 7)	intron (NM_080823, intron 5 of 7)	-4639	NM_005975	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
100093	chr17	58315371	58315830	+	0	NA	intron (NM_001261835, intron 16 of 31)	intron (NM_001261835, intron 16 of 31)	-9850	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
16716	chr1	155239501	155240100	+	0	NA	intron (NM_001171811, intron 2 of 9).2	intron (NM_001171811, intron 2 of 9).2	1449	NM_001171812	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
102395	chr17	75586171	75586330	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1808	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
187932	chr5	148887121	148887780	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	60839	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
58297	chr12	130821571	130821930	+	0	NA	exon (NM_001351049, exon 3 of 10)	exon (NM_001351049, exon 3 of 10)	17500	NM_001351051	2054		NM_001980	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
221743	chr8	127733701	127734650	+	0	NA	promoter-TSS (NR_117102)	promoter-TSS (NR_117102)	-208	NR_117101	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
67419	chr14	70254721	70255720	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7419	NR_003951	145241		NR_003951	ENSG00000293335	ADAM21P1	ADAM21P	ADAM metallopeptidase domain 21 pseudogene 1	pseudo
150509	chr21	42864121	42864580	+	0	NA	intron (NM_001260475, intron 3 of 10)	intron (NM_001260475, intron 3 of 10)	14925	NM_001260477	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
111191	chr19	3436651	3437280	+	0	NA	intron (NM_205843, intron 6 of 10)	intron (NM_205843, intron 6 of 10)	43560	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
123920	chr19	55359321	55360280	+	0	NA	exon (NM_001145402, exon 9 of 11)	exon (NM_001145402, exon 9 of 11)	3460	NM_001145402	284418		NM_001145402	ENSG00000180043	GARIN5B	C19orf16|FAM71E2	golgi associated RAB2 interactor family member 5B	protein-coding
151111	chr21	44871271	44871430	+	0	NA	intron (NM_004339, intron 1 of 5)	intron (NM_004339, intron 1 of 5)	2340	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
73138	chr15	41347451	41347950	+	0	NA	intron (NM_001301136, intron 2 of 10)	AluY|SINE|Alu	14819	NM_018454	51203		NM_016359	ENSG00000137804	NUSAP1	ANKT|BM037|LNP|NUSAP|PRO0310p1|Q0310|SAPL	nucleolar and spindle associated protein 1	protein-coding
119652	chr19	40818201	40818940	+	0	NA	Intergenic	Intergenic	-7470	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
14432	chr1	144375801	144376200	+	0	NA	Intergenic	Intergenic	-2341	NM_001144032	730262		NM_001144032	ENSG00000271567	PPIAL4E	COAS2|PPIAL4F	peptidylprolyl isomerase A like 4E	protein-coding
33003	chr10	110572871	110573050	+	0	NA	intron (NM_005445, intron 2 of 28)	L1MC4|LINE|L1	5265	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
56353	chr12	113082621	113082930	+	0	NA	intron (NM_004416, intron 3 of 9)	AluJr|SINE|Alu	26045	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
65962	chr14	56132271	56132430	+	0	NA	intron (NM_021255, intron 1 of 5)	intron (NM_021255, intron 1 of 5)	13939	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
8173	chr1	39556301	39556750	+	0	NA	intron (NR_144355, intron 2 of 11)	AluSx3|SINE|Alu	3173	NR_003929	728448		NR_003929	ENSG00000291129	PPIEL	PPIEP1	peptidylprolyl isomerase E like (pseudogene)	pseudo
141110	chr2	238706671	238706830	+	0	NA	Intergenic	L1MEg|LINE|L1	141157	NR_157851	100287387		NR_157851		LOC100287387	-	uncharacterized LOC100287387	ncRNA
31559	chr10	97234401	97234700	+	0	NA	intron (NM_001204300, intron 8 of 10)	intron (NM_001204300, intron 8 of 10)	36107	NM_001256423	84986		NM_032900	ENSG00000213390	ARHGAP19	-	Rho GTPase activating protein 19	protein-coding
14254	chr1	143252771	143253150	+	0	NA	Intergenic	Intergenic	169632	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
136569	chr2	177753801	177754300	+	0	NA	intron (NM_001077358, intron 9 of 18)	intron (NM_001077358, intron 9 of 18)	80728	NR_136171	105373764		NR_136171	ENSG00000229941	PDE11A-AS1	-	PDE11A antisense RNA 1	ncRNA
35551	chr11	1630971	1631330	+	0	NA	TTS (NM_001001480)	TTS (NM_001001480)	1347	NM_001001480	439915		NM_001001480	ENSG00000185940	KRTAP5-5	KRTAP5-11|KRTAP5.5	keratin associated protein 5-5	protein-coding
206567	chr7	35660021	35660300	+	0	NA	intron (NM_022373, intron 5 of 8)	L1PA5|LINE|L1	34975	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
23791	chr1	234114621	234114900	+	0	NA	intron (NM_173508, intron 2 of 7)	intron (NM_173508, intron 2 of 7)	-99451	NM_001300845	148641		NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
38620	chr11	46339351	46339650	+	0	NA	intron (NM_201532, intron 1 of 30)	intron (NM_201532, intron 1 of 30)	-5767	NM_201533	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
93986	chr17	21982201	21982400	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-220695	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
237818	chrX	129960951	129961880	+	0	NA	Intergenic	Intergenic	-19564	NM_001184772	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
46315	chr11	125110521	125110780	+	0	NA	5' UTR (NM_001258241, exon 2 of 6)	5' UTR (NM_001258241, exon 2 of 6)	976	NR_047590	219854		NM_001080546	ENSG00000150433	TMEM218	JBTS39	transmembrane protein 218	protein-coding
161792	chr3	45109921	45110650	+	0	NA	TTS (NM_178181)	TTS (NM_178181)	36093	NM_022842	64866		NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
158181	chr22	50223401	50223600	+	0	NA	intron (NM_020461, intron 13 of 24)	AluSx1|SINE|Alu	21523	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
29471	chr10	70559021	70559880	+	0	NA	intron (NM_014431, intron 18 of 19)	L2a|LINE|L2	43291	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
97264	chr17	43010951	43011250	+	0	NA	intron (NM_005533, intron 1 of 6)	intron (NM_005533, intron 1 of 6)	4316	NM_005533	3430		NM_005533	ENSG00000068079	IFI35	IFP35	interferon induced protein 35	protein-coding
73831	chr15	49169771	49171150	+	0	NA	intron (NR_147895, intron 1 of 10)	intron (NR_147895, intron 1 of 10)	213	NM_002044	2585		NM_002044	ENSG00000156958	GALK2	GK2	galactokinase 2	protein-coding
72351	chr15	31338671	31339480	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	12240	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
109885	chr19	1257271	1257430	+	0	NA	3' UTR (NM_177401, exon 8 of 8)	3' UTR (NM_177401, exon 8 of 8)	8797	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
182705	chr5	68232271	68232430	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	16594	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
119902	chr19	41563201	41565580	+	0	NA	intron (NM_001288773, intron 1 of 7)	LSU-rRNA_Hsa|rRNA|rRNA	-11776	NM_001290113	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
214296	chr7	149123901	149124300	+	0	NA	intron (NM_001001661, intron 1 of 3)	AluYm1|SINE|Alu	2224	NM_001001661	155054		NM_001001661	ENSG00000204947	ZNF425	-	zinc finger protein 425	protein-coding
54951	chr12	96241401	96244030	+	0	NA	intron (NM_005230, intron 2 of 4)	intron (NM_005230, intron 2 of 4)	-12783	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
188883	chr5	159515851	159516180	+	0	NA	Intergenic	Intergenic	-49739	NR_027110	285627		NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
18590	chr1	165443871	165444230	+	0	NA	intron (NR_033824, intron 1 of 1)	intron (NR_033824, intron 1 of 1)	1076	NR_033824	6258		NM_006917	ENSG00000143171	RXRG	NR2B3|RXR-gamma|RXRC|RXRgamma	retinoid X receptor gamma	protein-coding
185808	chr5	132435901	132436380	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	25211	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
221644	chr8	125931771	125932400	+	0	NA	intron (NR_038447, intron 3 of 3)	L2a|LINE|L2	19112	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
149093	chr21	15831501	15832000	+	0	NA	intron (NM_001352560, intron 16 of 23)	intron (NM_001352560, intron 16 of 23)	101768	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
139584	chr2	224968801	224969030	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	13512	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
152164	chr22	20063701	20063900	+	0	NA	intron (NM_001322141, intron 8 of 8)	intron (NM_001322141, intron 8 of 8)	-16432	NM_001190326	54487		NM_022720	ENSG00000128191	DGCR8	C22orf12|DGCRK6|Gy1|pasha	DGCR8 microprocessor complex subunit	protein-coding
23982	chr1	235211351	235211850	+	0	NA	intron (NM_031371, intron 16 of 22)	AluJr|SINE|Alu	-21484	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
180631	chr5	16690351	16690450	+	0	NA	intron (NM_012334, intron 27 of 40)	intron (NM_012334, intron 27 of 40)	-73342	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
18565	chr1	162822271	162822780	+	0	NA	Intergenic	CpG	31823	NM_001304512	51478		NM_016371	ENSG00000132196	HSD17B7	PRAP|SDR37C1	hydroxysteroid 17-beta dehydrogenase 7	protein-coding
238238	chrX	141426871	141427030	+	0	NA	Intergenic	L1HS|LINE|L1	-75899	NR_037183	619455		NR_037183	ENSG00000277215	SPANXA2-OT1	CXorf18	SPANXA2 overlapping transcript 1	ncRNA
181813	chr5	52743871	52744380	+	0	NA	Intergenic	L2b|LINE|L2	-43791	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
219009	chr8	63193121	63193380	+	0	NA	intron (NM_001277815, intron 5 of 5)	AluSz|SINE|Alu	24247	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
227675	chr9	92989471	92990380	+	0	NA	intron (NM_001369951, intron 3 of 17)	L1MA5A|LINE|L1	15456	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
211941	chr7	112471651	112471750	+	0	NA	intron (NR_120333, intron 8 of 11)	intron (NR_120333, intron 8 of 11)	-9153	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
209513	chr7	76986071	76986230	+	0	NA	intron (NR_023383, intron 1 of 10)	intron (NR_023383, intron 1 of 10)	5328	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
206710	chr7	36517771	36518130	+	0	NA	intron (NM_001177506, intron 20 of 21)	(AC)n|Simple_repeat|Simple_repeat	82170	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
112638	chr19	6797101	6797500	+	0	NA	intron (NM_005428, intron 1 of 26)	intron (NM_005428, intron 1 of 26)	24592	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
140885	chr2	237626001	237626250	+	0	NA	Intergenic	Intergenic	-1462	NM_001137550	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
133770	chr2	127648901	127650180	+	0	NA	intron (NM_001161416, intron 2 of 2)	intron (NM_001161416, intron 2 of 2)	-1287	NM_001256542	55679		NM_017980	ENSG00000072163	LIMS2	LGMD2W|MDRCMTT|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
11447	chr1	89845801	89846000	+	0	NA	intron (NM_001134479, intron 2 of 2)	AluSp|SINE|Alu	23961	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
63882	chr14	21796751	21797250	+	0	NA	Intergenic	Intergenic	-125983	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
95866	chr17	38847501	38847830	+	0	NA	TTS (NM_000978)	TTS (NM_000978)	3993	NR_145761	109617002		NR_145761	ENSG00000252699	SNORA21B	-	small nucleolar RNA, H/ACA box 21B	snoRNA
214268	chr7	148979501	148980650	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-3680	NR_004392	6085		NR_004392	ENSG00000202354	RNY3	HY3|Y3	RNA, Ro60-associated Y3	ncRNA
108072	chr18	59902001	59903230	+	0	NA	3' UTR (NM_001382623, exon 2 of 2)	3' UTR (NM_001382623, exon 2 of 2)	2619	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
122071	chr19	48718571	48718730	+	0	NA	intron (NM_001130915, intron 2 of 9)	intron (NM_001130915, intron 2 of 9)	1075	NM_001130915	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
149399	chr21	31162321	31162780	+	0	NA	intron (NM_001353694, intron 16 of 27)	intron (NM_001353694, intron 16 of 27)	-1610	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
196859	chr6	48176951	48177050	+	0	NA	Intergenic	Intergenic	-65803	NM_001384253	442213		NM_207499	ENSG00000244694	PTCHD4	C6orf138|PTCH53|dJ402H5.2	patched domain containing 4	protein-coding
99955	chr17	57439771	57440300	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	83562	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
186091	chr5	134111551	134112530	+	0	NA	Intergenic	MIR|SINE|MIR	-2641	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
3308	chr1	15384151	15384700	+	0	NA	intron (NM_052929, intron 30 of 30)	intron (NM_052929, intron 30 of 30)	-25463	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
104436	chr17	81082701	81082900	+	0	NA	promoter-TSS (NM_001385152)	promoter-TSS (NM_001385152)	-189	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
145487	chr20	43921421	43921680	+	0	NA	intron (NM_001098796, intron 1 of 8)	intron (NM_001098796, intron 1 of 8)	5420	NM_001098796	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
92732	chr17	14301901	14302900	+	0	NA	intron (NM_006041, intron 1 of 1)	CpG	1319	NM_006041	9953		NM_006041	ENSG00000125430	HS3ST3B1	3-OST-3B|3OST3B1|h3-OST-3B	heparan sulfate-glucosamine 3-sulfotransferase 3B1	protein-coding
205200	chr7	7760871	7761690	+	0	NA	intron (NM_001302350, intron 3 of 4)	AluJb|SINE|Alu	-42673	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
170374	chr3	184642351	184642650	+	0	NA	Intergenic	Intergenic	69564	NM_022149	64110		NM_022149	ENSG00000177383	MAGEF1	MAGE-F1	MAGE family member F1	protein-coding
56634	chr12	118358821	118359200	+	0	NA	intron (NM_001346487, intron 1 of 20)	intron (NM_001346487, intron 1 of 20)	695	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
106734	chr18	23525721	23526300	+	0	NA	intron (NM_001276342, intron 10 of 17)	MER105|DNA|hAT-Charlie	22499	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
43572	chr11	83067951	83068250	+	0	NA	intron (NM_014488, intron 1 of 5)	AluSz|SINE|Alu	3362	NM_001286061	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
219303	chr8	70070401	70070680	+	0	NA	intron (NM_024504, intron 1 of 7)	CpG	712	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
37193	chr11	14288051	14288550	+	0	NA	intron (NM_001102669, intron 4 of 5)	intron (NM_001102669, intron 4 of 5)	70185	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
94010	chr17	25569151	25569350	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1519991	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
71268	chr14	105217951	105218250	+	0	NA	intron (NM_145685, intron 10 of 13)	intron (NM_145685, intron 10 of 13)	29785	NM_145685	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
142889	chr20	17955351	17955650	+	0	NA	intron (NM_014426, intron 2 of 12)	intron (NM_014426, intron 2 of 12)	7446	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
128727	chr2	61869401	61869600	+	0	NA	exon (NM_001256721, exon 12 of 13)	exon (NM_001256721, exon 12 of 13)	-15440	NM_032180	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
82785	chr16	21453421	21453680	+	0	NA	intron (NR_027155, intron 23 of 28)	intron (NR_027155, intron 23 of 28)	-19095	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
115580	chr19	15844001	15845100	+	0	NA	Intergenic	Intergenic	15603	NR_015379	652995		NR_015379	ENSG00000214049	UCA1	CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36	urothelial cancer associated 1	ncRNA
25862	chr10	11244451	11244980	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	79685	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
205081	chr7	6642701	6642900	+	0	NA	intron (NM_001278559, intron 5 of 8)	intron (NM_001278559, intron 5 of 8)	5482	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
51030	chr12	49751601	49751800	+	0	NA	intron (NM_001098576, intron 1 of 9)	intron (NM_001098576, intron 1 of 9)	9891	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
38571	chr11	46101801	46102000	+	0	NA	intron (NR_147890, intron 1 of 18)	AluSc5|SINE|Alu	18919	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
72896	chr15	40335421	40336330	+	0	NA	intron (NM_207380, intron 9 of 10)	intron (NM_207380, intron 9 of 10)	5092	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
42597	chr11	72075251	72075350	+	0	NA	intron (NM_001286561, intron 1 of 26)	LTR50|LTR|ERVL	-2998	NR_036123	100422953		NR_036123	ENSG00000263742	MIR3165	mir-3165	microRNA 3165	ncRNA
64577	chr14	24692101	24692350	+	0	NA	Intergenic	AluJo|SINE|Alu	-58035	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
152505	chr22	20941101	20941300	+	0	NA	intron (NR_156180, intron 2 of 3)	L3|LINE|CR1	-15892	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
230397	chr9	128107971	128108130	+	0	NA	non-coding (NR_049766, exon 10 of 10)	non-coding (NR_049766, exon 10 of 10)	9568	NR_049766	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
22736	chr1	224333071	224334150	+	0	NA	Intergenic	Intergenic	-3421	NM_206840	4931		NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP like	protein-coding
100399	chr17	60355771	60355930	+	0	NA	intron (NM_032582, intron 1 of 33)	AluJb|SINE|Alu	36283	NM_032582	84669		NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding
131338	chr2	96149871	96150980	+	0	NA	Intergenic	Intergenic	-4985	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
178144	chr4	142303051	142303150	+	0	NA	intron (NR_169617, intron 7 of 22)	intron (NR_169617, intron 7 of 22)	2732	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
208979	chr7	74206201	74207200	+	0	NA	Intergenic	Intergenic	-3306	NM_032464	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
154386	chr22	35256471	35256630	+	0	NA	promoter-TSS (NM_001003681)	promoter-TSS (NM_001003681)	-943	NM_001362972	10042		NM_005487	ENSG00000100281	HMGXB4	HMG2L1|HMGBCG|P53N|THC211630	HMG-box containing 4	protein-coding
226248	chr9	67710771	67710950	+	0	NA	promoter-TSS (NR_121606).2	promoter-TSS (NR_121606).2	-817	NR_121606	102723709		NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
138977	chr2	218281901	218282530	+	0	NA	intron (NM_022152, intron 1 of 11)	intron (NM_022152, intron 1 of 11)	-2027	NR_106768	102465256		NR_106768	ENSG00000284173	MIR6513	hsa-mir-6513|mir-6513	microRNA 6513	ncRNA
115669	chr19	16149871	16150230	+	0	NA	intron (NR_163151, intron 2 of 5)	intron (NR_163151, intron 2 of 5)	6365	NR_163153	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
74586	chr15	60558271	60558780	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	34001	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
33669	chr10	119868821	119869080	+	0	NA	intron (NM_001256379, intron 1 of 15)	L2a|LINE|L2	3893	NM_001256378	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
34819	chr11	290901	291880	+	0	NA	intron (NM_025092, intron 4 of 13)	intron (NM_025092, intron 4 of 13)	2264	NM_025092	80162		NM_025092	ENSG00000142102	PGGHG	ATHL1	protein-glucosylgalactosylhydroxylysine glucosidase	protein-coding
44887	chr11	114402051	114402700	+	0	NA	intron (NM_001286046, intron 2 of 4)	intron (NM_001286046, intron 2 of 4)	1709	NM_016090	10179		NM_016090	ENSG00000076053	RBM7	-	RNA binding motif protein 7	protein-coding
218795	chr8	59021221	59021680	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	97697	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
99437	chr17	50123821	50124080	+	0	NA	intron (NM_174920, intron 2 of 10)	intron (NM_174920, intron 2 of 10)	6210	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
234899	chrX	30971821	30972230	+	0	NA	Intergenic	Intergenic	-82771	NM_152787	257397		NM_152787	ENSG00000157625	TAB3	MAP3K7IP3|NAP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 3	protein-coding
104897	chr17	81890051	81890150	+	0	NA	promoter-TSS (NM_001289414)	promoter-TSS (NM_001289414)	-690	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
121629	chr19	47443201	47443650	+	0	NA	intron (NM_015063, intron 4 of 9)	intron (NM_015063, intron 4 of 9)	-21192	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
57205	chr12	121495751	121496050	+	0	NA	intron (NM_001005366, intron 11 of 22)	MamRep137|DNA|TcMar-Tigger	-51548	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
1703	chr1	5172621	5172700	+	0	NA	Intergenic	Intergenic	518051	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
90910	chr17	2512971	2513130	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1162	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
106633	chr18	22407621	22408320	+	0	NA	Intergenic	Intergenic	9945	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
180709	chr5	23951801	23952350	+	0	NA	intron (NR_131245, intron 1 of 4)	LTR12C|LTR|ERV1	727	NR_131245	439936		NR_131245	ENSG00000248874	LINC02899	C5orf17	long intergenic non-protein coding RNA 2899	ncRNA
193992	chr6	31770821	31771380	+	0	NA	intron (NM_025258, intron 7 of 16).6	MIR|SINE|MIR	-5512	NR_126423	104413891		NR_126423		SAPCD1-AS1	C6orf26-AS1	SAPCD1 antisense RNA 1	ncRNA
225557	chr9	35903051	35903750	+	0	NA	Intergenic	Intergenic	-2802	NM_001039792	646962		NM_001039792	ENSG00000196196	HRCT1	LGLL338|PRO537|UNQ338	histidine rich carboxyl terminus 1	protein-coding
92536	chr17	8941001	8941970	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	24222	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
203461	chr7	451921	452380	+	0	NA	Intergenic	Intergenic	-20349	NR_165236	112267991		NR_165236		LOC112267991	-	uncharacterized LOC112267991	ncRNA
13375	chr1	113924601	113925000	+	0	NA	intron (NR_110726, intron 2 of 2)	FLAM_C|SINE|Alu	4458	NR_110725	101928846		NR_110725	ENSG00000235527	HIPK1-AS1	-	HIPK1 antisense RNA 1	ncRNA
91132	chr17	3721051	3721750	+	0	NA	intron (NM_002208, intron 28 of 30)	AluJo|SINE|Alu	-2503	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
85012	chr16	31522251	31522350	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-5600	NM_001318221	51327		NM_016633	ENSG00000169877	AHSP	EDRF|ERAF	alpha hemoglobin stabilizing protein	protein-coding
13423	chr1	114207401	114207800	+	0	NA	Intergenic	MIRb|SINE|MIR	-53731	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
149520	chr21	32914551	32914950	+	0	NA	Intergenic	Intergenic	-44138	NR_135522	102724502		NR_135522	ENSG00000228961	LINC01690	-	long intergenic non-protein coding RNA 1690	ncRNA
229495	chr9	122220751	122220850	+	0	NA	intron (NM_199160, intron 4 of 8)	intron (NM_199160, intron 4 of 8)	940	NM_001242335	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
185670	chr5	131629821	131630430	+	0	NA	intron (NM_016340, intron 1 of 27)	Tigger1|DNA|TcMar-Tigger	5104	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
146723	chr20	50596101	50596500	+	0	NA	intron (NM_080829, intron 14 of 21)	intron (NM_080829, intron 14 of 21)	10514	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
67884	chr14	74324821	74325100	+	0	NA	Intergenic	Intergenic	-22026	NM_001353595	5826		NM_005050	ENSG00000119688	ABCD4	ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L	ATP binding cassette subfamily D member 4	protein-coding
202158	chr6	155223971	155224730	+	0	NA	intron (NM_001010927, intron 1 of 12)	intron (NM_001010927, intron 1 of 12)	7384	NM_001010927	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
57929	chr12	123585771	123586030	+	0	NA	intron (NM_006815, intron 1 of 3)	intron (NM_006815, intron 1 of 3)	1348	NM_001321445	10959		NM_006815	ENSG00000086598	TMED2	P24A|RNP24|p24|p24b1|p24beta1	transmembrane p24 trafficking protein 2	protein-coding
96240	chr17	39812471	39812830	+	0	NA	intron (NM_001257408, intron 2 of 6)	intron (NM_001257408, intron 2 of 6)	-34425	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
159521	chr3	14422871	14423580	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	20619	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
6822	chr1	30976921	30977580	+	0	NA	intron (NM_014676, intron 9 of 21)	Tigger4b|DNA|TcMar-Tigger	-9013	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
49496	chr12	25282671	25283280	+	0	NA	Intergenic	Intergenic	-32046	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
81185	chr16	4475871	4477690	+	0	NA	promoter-TSS (NM_001351994).2	promoter-TSS (NM_001351994).2	382	NM_002134	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
168672	chr3	150553201	150553400	+	0	NA	intron (NM_001319043, intron 2 of 12)	AluSq2|SINE|Alu	6513	NM_032025	83939		NM_032025	ENSG00000144895	EIF2A	CDA02|EIF-2A|MST089|MSTP004|MSTP089	eukaryotic translation initiation factor 2A	protein-coding
203790	chr7	1245321	1246100	+	0	NA	Intergenic	Intergenic	12838	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
53907	chr12	71639451	71640200	+	0	NA	intron (NM_144982, intron 6 of 34)	intron (NM_144982, intron 6 of 34)	24023	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
74991	chr15	63925451	63925550	+	0	NA	intron (NM_014326, intron 8 of 11)	intron (NM_014326, intron 8 of 11)	-2774	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
47574	chr12	4506701	4507550	+	0	NA	intron (NR_144380, intron 6 of 10)	intron (NR_144380, intron 6 of 10)	31344	NM_020374	57102		NM_020374	ENSG00000047621	FERRY3	C12orf4|Fy-3|MRT66	FERRY endosomal RAB5 effector complex subunit 3	protein-coding
126408	chr2	27653701	27653900	+	0	NA	intron (NM_001282731, intron 5 of 5)	intron (NM_001282731, intron 5 of 5)	-9671	NM_018158	22950		NM_018158	ENSG00000163798	SLC4A1AP	HLC3	solute carrier family 4 member 1 adaptor protein	protein-coding
43776	chr11	86253621	86254050	+	0	NA	intron (NM_001330334, intron 3 of 9)	AluSq2|SINE|Alu	9082	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
163549	chr3	51684701	51685250	+	0	NA	intron (NM_015926, intron 3 of 4)	intron (NM_015926, intron 3 of 4)	13348	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
138124	chr2	202293951	202294380	+	0	NA	intron (NM_015934, intron 9 of 14)	AluSq2|SINE|Alu	1114	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
146624	chr20	50178071	50178430	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	5680	NR_109943	101927541		NR_109943	ENSG00000231742	LINC01273	-	long intergenic non-protein coding RNA 1273	ncRNA
52391	chr12	55726551	55727400	+	0	NA	intron (NM_001257390, intron 3 of 7)	intron (NM_001257390, intron 3 of 7)	813	NM_001257401	967		NM_001780	ENSG00000135404	CD63	AD1|HOP-26|ME491|MLA1|OMA81H|Pltgp40|TSPAN30	CD63 molecule	protein-coding
119427	chr19	40346701	40347050	+	0	NA	intron (NR_156465, intron 1 of 8)	MIR|SINE|MIR	1522	NM_001256441	126526		NM_178830	ENSG00000160392	C19orf47	-	chromosome 19 open reading frame 47	protein-coding
21136	chr1	203661071	203661800	+	0	NA	intron (NM_001365784, intron 1 of 20)	MIRb|SINE|MIR	33498	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
179166	chr4	169823571	169823980	+	0	NA	Intergenic	Intergenic	-65831	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
230073	chr9	127446971	127447330	+	0	NA	TTS (NM_000976)	TTS (NM_000976)	1487	NR_002449	26783		NR_002449	ENSG00000201302	SNORA65	RNU65|U65	small nucleolar RNA, H/ACA box 65	snoRNA
198718	chr6	108171371	108172300	+	0	NA	intron (NM_001286102, intron 2 of 8)	intron (NM_001286102, intron 2 of 8)	3812	NM_001286102	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
201123	chr6	142882621	142883080	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	62326	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
22532	chr1	222130021	222130280	+	0	NA	Intergenic	Intergenic	-151630	NR_149057	105372950		NR_149057	ENSG00000238042	LINC02257	-	long intergenic non-protein coding RNA 2257	ncRNA
87271	chr16	70009401	70009600	+	0	NA	intron (NR_003610, intron 16 of 25)	AluJo|SINE|Alu	-20846	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
143067	chr20	21515451	21516000	+	0	NA	Intergenic	Intergenic	-1661	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
226139	chr9	63433171	63433480	+	0	NA	Intergenic	L2c|LINE|L2	98787	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
232840	chr9	136763001	136764150	+	0	NA	intron (NM_203347, intron 3 of 6)	intron (NM_203347, intron 3 of 6)	943	NM_203347	389812		NM_203347	ENSG00000177984	LCN15	PRO6093|UNQ2541	lipocalin 15	protein-coding
166033	chr3	108575421	108575680	+	0	NA	intron (NM_020890, intron 8 of 20)	intron (NM_020890, intron 8 of 20)	13888	NM_020890	57650		NM_020890	ENSG00000163507	CIP2A	KIAA1524|NOCIVA|p90	cellular inhibitor of PP2A	protein-coding
137058	chr2	190894401	190895130	+	0	NA	intron (NM_014905, intron 1 of 17)	intron (NM_014905, intron 1 of 17)	13944	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
100520	chr17	62453621	62454230	+	0	NA	TTS (NM_181725)	TTS (NM_181725)	-23886	NM_001375271	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
232375	chr9	135906801	135908680	+	0	NA	promoter-TSS (NM_015447)	promoter-TSS (NM_015447)	-194	NM_015447	157922		NM_015447	ENSG00000130559	CAMSAP1	CDCBM12	calmodulin regulated spectrin associated protein 1	protein-coding
210021	chr7	93921821	93922100	+	0	NA	5' UTR (NM_004126, exon 1 of 2)	5' UTR (NM_004126, exon 1 of 2)	225	NM_004126	2791		NM_004126	ENSG00000127920	GNG11	GNGT11|HG3H1	G protein subunit gamma 11	protein-coding
171372	chr3	196080801	196083350	+	0	NA	promoter-TSS (NM_001128148)	promoter-TSS (NM_001128148)	15	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
68053	chr14	75248551	75248650	+	0	NA	Intergenic	L2b|LINE|L2	-30228	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
78257	chr15	90819351	90819450	+	0	NA	Intergenic	CpG	-49188	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
191788	chr6	14138321	14138600	+	0	NA	Intergenic	AluSx4|SINE|Alu	20688	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
19142	chr1	171548571	171549750	+	0	NA	intron (NM_015172, intron 17 of 33)	intron (NM_015172, intron 17 of 33)	63630	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
76393	chr15	74624201	74624480	+	0	NA	intron (NM_001130028, intron 5 of 12)	intron (NM_001130028, intron 5 of 12)	8504	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
70091	chr14	100191021	100191280	+	0	NA	Intergenic	AluSc8|SINE|Alu	-31505	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
155244	chr22	37948171	37948530	+	0	NA	intron (NM_001207062, intron 2 of 5)	AluSx1|SINE|Alu	5251	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
72659	chr15	38524751	38525280	+	0	NA	intron (NM_001128602, intron 3 of 15)	AluSz|SINE|Alu	39799	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
105440	chr17	82917601	82918000	+	0	NA	intron (NM_005993, intron 23 of 38)	intron (NM_005993, intron 23 of 38)	-77778	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
209132	chr7	75077221	75078080	+	0	NA	Intergenic	Intergenic	-3769	NM_001281441	81554		NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
117629	chr19	23389551	23389850	+	0	NA	intron (NM_003430, intron 1 of 3)	intron (NM_003430, intron 1 of 3)	5771	NM_003430	7644		NM_003430	ENSG00000167232	ZNF91	HPF7|HTF10	zinc finger protein 91	protein-coding
74782	chr15	63269301	63269500	+	0	NA	Intergenic	L2c|LINE|L2	-8150	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
161568	chr3	42800371	42800530	+	0	NA	intron (NM_001099669, intron 1 of 3)	intron (NM_001099669, intron 1 of 3)	3992	NM_001099668	25994		NM_014056	ENSG00000181061	HIGD1A	HIG1|RCF1a	HIG1 hypoxia inducible domain family member 1A	protein-coding
188259	chr5	151080221	151081510	+	0	NA	intron (NM_001252390, intron 1 of 17)	CpG	169	NM_001252386	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
54112	chr12	76158601	76159060	+	0	NA	Intergenic	Intergenic	-74145	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
157936	chr22	49789171	49790030	+	0	NA	intron (NR_146335, intron 8 of 13)	intron (NR_146335, intron 8 of 13)	34731	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
142253	chr20	3162351	3162650	+	0	NA	TTS (NM_001365618)	TTS (NM_001365618)	-2635	NM_001267584	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
193274	chr6	29974551	29974850	+	0	NA	promoter-TSS (NR_028032)	promoter-TSS (NR_028032)	-415	NR_028032	10255		NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9	ncRNA
217743	chr8	30729951	30730350	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-2151	NM_001195103	2936		NM_000637	ENSG00000104687	GSR	GR|GSRD|HEL-75|HEL-S-122m	glutathione-disulfide reductase	protein-coding
220642	chr8	100971351	100971450	+	0	NA	Intergenic	AluYa5|SINE|Alu	-18018	NM_003406	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
127191	chr2	38529871	38530230	+	0	NA	Intergenic	AluSz|SINE|Alu	-14310	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
166339	chr3	112967601	112968430	+	0	NA	intron (NM_138939, intron 1 of 3)	MIR|SINE|MIR	7088	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
75277	chr15	65053921	65054700	+	0	NA	TTS (NM_178859)	TTS (NM_178859)	8923	NM_178859	123264		NM_178859	ENSG00000186198	SLC51B	OSTB|OSTBETA|PBAM2|SLC51A1BP	SLC51 subunit beta	protein-coding
179198	chr4	173365651	173366050	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-5104	NM_003864	8819		NM_003864	ENSG00000164105	SAP30	-	Sin3A associated protein 30	protein-coding
65073	chr14	39421801	39422450	+	0	NA	intron (NM_203301, intron 1 of 3)	AluSx|SINE|Alu	10375	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
216153	chr8	11562971	11563330	+	0	NA	intron (NM_001715, intron 12 of 12)	intron (NM_001715, intron 12 of 12)	-13385	NR_040035	83655		NM_054029	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
208997	chr7	74256371	74256530	+	0	NA	Intergenic	Intergenic	-1992	NM_002914	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
138999	chr2	218326051	218326550	+	0	NA	TTS (NR_125777)	TTS (NR_125777)	3121	NM_022572	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
94147	chr17	28341271	28341680	+	0	NA	intron (NM_021137, intron 5 of 6)	intron (NM_021137, intron 5 of 6)	5714	NM_021137	7126		NM_021137	ENSG00000109079	TNFAIP1	B12|B61|BTBD34|EDP1|hBACURD2	TNF alpha induced protein 1	protein-coding
176737	chr4	101346801	101349380	+	0	NA	promoter-TSS (NM_000944)	promoter-TSS (NM_000944)	313	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
99089	chr17	49003871	49004580	+	0	NA	intron (NM_001160423, intron 2 of 12)	intron (NM_001160423, intron 2 of 12)	6840	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
16512	chr1	154925771	154926680	+	0	NA	intron (NM_006556, intron 4 of 4)	intron (NM_006556, intron 4 of 4)	10494	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
230379	chr9	128081421	128081950	+	0	NA	intron (NM_001006641, intron 1 of 9)	AluJr|SINE|Alu	-9779	NM_001006642	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
100377	chr17	60133651	60133950	+	0	NA	Intergenic	AluSx3|SINE|Alu	-16173	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
175281	chr4	67539771	67540980	+	0	NA	intron (NR_155754, intron 3 of 18)	intron (NR_155754, intron 3 of 18)	5128	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
65286	chr14	50042401	50042900	+	0	NA	intron (NR_131171, intron 4 of 8)	AluY|SINE|Alu	-35130	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
33361	chr10	117216571	117217000	+	0	NA	Intergenic	CpG	19296	NM_181840	338567		NM_181840	ENSG00000186795	KCNK18	K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK	potassium two pore domain channel subfamily K member 18	protein-coding
234877	chrX	29334621	29334880	+	0	NA	intron (NM_014271, intron 3 of 10)	SVA_D|Retroposon|SVA	-239528	NR_049877	100847047		NR_049877	ENSG00000264090	MIR4666B	-	microRNA 4666b	ncRNA
79173	chr16	296471	296830	+	0	NA	intron (NM_181050, intron 7 of 9)	intron (NM_181050, intron 7 of 9)	13486	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
104879	chr17	81873121	81873380	+	0	NA	Intergenic	Intergenic	-1913	NM_001301240	396		NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
160693	chr3	32313621	32314280	+	0	NA	intron (NM_001320308, intron 1 of 2)	AluJb|SINE|Alu	75270	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
163988	chr3	53129651	53131330	+	0	NA	promoter-TSS (NM_052859)	promoter-TSS (NM_052859)	-55	NM_052859	91869		NM_052859	ENSG00000163933	RFT1	CDG1N	RFT1 homolog	protein-coding
196283	chr6	42982171	42982480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2245	NM_180977	5528		NM_006245	ENSG00000112640	PPP2R5D	B56D|B56delta|HJS1|MRD35	protein phosphatase 2 regulatory subunit B'delta	protein-coding
93262	chr17	18025201	18027000	+	0	NA	intron (NM_145691, intron 4 of 7)	intron (NM_145691, intron 4 of 7)	13068	NM_145691	91647		NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|LP3663|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
16388	chr1	154406851	154406950	+	0	NA	promoter-TSS (NR_147855)	promoter-TSS (NR_147855)	-336	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
144557	chr20	35737601	35738630	+	0	NA	intron (NR_136587, intron 4 of 4)	AluSc8|SINE|Alu	4145	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
161596	chr3	43071221	43071600	+	0	NA	Intergenic	Intergenic	34669	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
169260	chr3	157173471	157173630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-13403	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
184382	chr5	98826971	98827500	+	0	NA	Intergenic	Charlie2b|DNA|hAT-Charlie	53572	NM_001366508	285704		NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule BMP co-receptor b	protein-coding
8213	chr1	39676321	39676580	+	0	NA	Intergenic	AluSp|SINE|Alu	-4412	NM_032526	84618		NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
7677	chr1	35779451	35780300	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-9897	NM_001330490	63967		NM_022111	ENSG00000092853	CLSPN	-	claspin	protein-coding
196912	chr6	52376071	52376600	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	14184	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
154628	chr22	36317601	36318130	+	0	NA	intron (NM_002473, intron 11 of 40)	intron (NM_002473, intron 11 of 40)	-30958	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
53336	chr12	64633601	64634250	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJb|SINE|Alu	-11320	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52856	chr12	57109901	57110800	+	0	NA	promoter-TSS (NM_001178079)	promoter-TSS (NM_001178079)	-61	NM_001178079	6778		NM_003153	ENSG00000166888	STAT6	D12S1644|HIES6|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6	protein-coding
175000	chr4	51841351	51841450	+	0	NA	Intergenic	Intergenic	-1600	NM_015115	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
238092	chrX	136546301	136546730	+	0	NA	intron (NM_016267, intron 2 of 4)	intron (NM_016267, intron 2 of 4)	-4363	NR_030631	100126324		NR_030631	ENSG00000216060	MIR934	MIRN934|hsa-mir-934|mir-934	microRNA 934	ncRNA
39880	chr11	62487101	62487500	+	0	NA	intron (NM_024060, intron 5 of 5)	MIR|SINE|MIR	58364	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
38737	chr11	46915621	46915880	+	0	NA	intron (NM_002334, intron 1 of 37)	AluSz6|SINE|Alu	2800	NM_002334	4038		NM_002334	ENSG00000134569	LRP4	CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2	LDL receptor related protein 4	protein-coding
64731	chr14	34527951	34528250	+	0	NA	intron (NM_001318916, intron 3 of 4)	AluSz6|SINE|Alu	11601	NM_018453	55837		NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding
224487	chr9	16867901	16868100	+	0	NA	intron (NM_001317940, intron 1 of 5)	intron (NM_001317940, intron 1 of 5)	2670	NM_001317940	54796		NM_017637	ENSG00000173068	BNC2	BSN2|LUTO|bn2	basonuclin zinc finger protein 2	protein-coding
189721	chr5	176534751	176534850	+	0	NA	intron (NM_014901, intron 1 of 10)	MIR|SINE|MIR	2602	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
48362	chr12	9422571	9422950	+	0	NA	intron (NR_033399, intron 18 of 26)	L1MC5a|LINE|L1	-15346	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
141228	chr2	239477021	239477280	+	0	NA	Intergenic	Intergenic	75402	NR_135577	101928111		NR_135575	ENSG00000222020	HDAC4-AS1	-	HDAC4 antisense RNA 1	ncRNA
90635	chr17	1657151	1657250	+	0	NA	intron (NM_006445, intron 34 of 42)	intron (NM_006445, intron 34 of 42)	-7334	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
174894	chr4	48941951	48942250	+	0	NA	Intergenic	LTR16|LTR|ERVL	-35272	NM_152398	132299		NM_152398	ENSG00000145247	OCIAD2	-	OCIA domain containing 2	protein-coding
1932	chr1	6489101	6489300	+	0	NA	intron (NM_198681, intron 2 of 21)	intron (NM_198681, intron 2 of 21)	1380	NM_001265594	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
183011	chr5	72847721	72849680	+	0	NA	intron (NM_002270, intron 2 of 24)	CpG-22173	561	NM_001364293	3842		NM_002270	ENSG00000083312	TNPO1	IPO2|KPNB2|MIP|MIP1|TRN	transportin 1	protein-coding
217644	chr8	30070771	30070930	+	0	NA	intron (NM_001284239, intron 1 of 4)	intron (NM_001284239, intron 1 of 4)	12214	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
149377	chr21	30839371	30839530	+	0	NA	Intergenic	Intergenic	-9691	NM_181606	337878		NM_181606	ENSG00000274749	KRTAP7-1	KAP7.1	keratin associated protein 7-1	protein-coding
88394	chr16	84621001	84621400	+	0	NA	Intergenic	AluJb|SINE|Alu	-3122	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
238149	chrX	136767001	136768040	+	0	NA	5' UTR (NM_001306177, exon 1 of 21)	5' UTR (NM_001306177, exon 1 of 21)	295	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
23266	chr1	227891871	227892030	+	0	NA	Intergenic	Intergenic	49733	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
108147	chr18	62552851	62553150	+	0	NA	intron (NM_017742, intron 5 of 13)	intron (NM_017742, intron 5 of 13)	29975	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
9966	chr1	54804371	54805580	+	0	NA	Intergenic	Intergenic	-1088	NM_152607	163747		NM_152607	ENSG00000162398	CIMAP2	C1orf177|LEM|LEXM	ciliary microtubule associated protein 2	protein-coding
34484	chr10	132518651	132518750	+	0	NA	non-coding (NR_158224, exon 2 of 4)	non-coding (NR_158224, exon 2 of 4)	18223	NR_158224	107984282		NR_158224		LOC107984282	-	uncharacterized LOC107984282	ncRNA
11826	chr1	92854151	92854600	+	0	NA	intron (NM_001252269, intron 1 of 3)	MIR|SINE|MIR	13656	NR_002444	26782		NR_002444	ENSG00000207523	SNORA66	RNU66|U66	small nucleolar RNA, H/ACA box 66	snoRNA
114450	chr19	12706521	12706980	+	0	NA	promoter-TSS (NR_002751)	promoter-TSS (NR_002751)	-232	NR_002751	26810		NR_002751	ENSG00000209702	SNORD41	RNU41|U41	small nucleolar RNA, C/D box 41	snoRNA
160794	chr3	32968121	32968650	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	16741	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
80682	chr16	3036151	3037230	+	0	NA	non-coding (NR_047572, exon 4 of 8)	non-coding (NR_047572, exon 4 of 8)	254	NM_001369667	146439		NM_001103175	ENSG00000162069	BICDL2	BICDR-2|BICDR2|CCDC64B	BICD family like cargo adaptor 2	protein-coding
93591	chr17	19126871	19127980	+	0	NA	promoter-TSS (NM_001353418)	promoter-TSS (NM_001353418)	-164	NM_001353418	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
211675	chr7	106345471	106345930	+	0	NA	Intergenic	Charlie6|DNA|hAT-Charlie	-60717	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
27984	chr10	42987151	42987450	+	0	NA	Intergenic	Intergenic	-5793	NR_126352	104266963		NR_126352	ENSG00000229630	LINC01264	-	long intergenic non-protein coding RNA 1264	ncRNA
218478	chr8	51873701	51873900	+	0	NA	intron (NM_052937, intron 1 of 5)	MSTA|LTR|ERVL-MaLR	25236	NM_001363193	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
227941	chr9	94409321	94409630	+	0	NA	intron (NM_032558, intron 1 of 11)	L1MB3|LINE|L1	34906	NM_032558	84641		NM_032558	ENSG00000148110	MFSD14B	HIATL1	major facilitator superfamily domain containing 14B	protein-coding
139262	chr2	219444821	219445280	+	0	NA	exon (NM_005876, exon 3 of 41)	exon (NM_005876, exon 3 of 41)	10207	NM_005876	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
213695	chr7	140178751	140178850	+	0	NA	non-coding (NR_024451, exon 1 of 1)	non-coding (NR_024451, exon 1 of 1)	1539	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
82461	chr16	16984651	16984950	+	0	NA	Intergenic	Intergenic	-149704	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
52021	chr12	53988121	53988550	+	0	NA	intron (NM_017409, intron 1 of 1)	intron (NM_017409, intron 1 of 1)	-2816	NR_047506	100874365		NR_047506	ENSG00000251151	HOXC-AS3	-	HOXC cluster antisense RNA 3	ncRNA
149871	chr21	35499121	35499480	+	0	NA	intron (NR_073512, intron 1 of 2)	L1PA2|LINE|L1	81464	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
106082	chr18	9130721	9131380	+	0	NA	intron (NM_021074, intron 7 of 7)	Tigger2a|DNA|TcMar-Tigger	5670	NR_110771	101927275		NR_110771	ENSG00000266053	NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
114044	chr19	10962201	10962430	+	0	NA	intron (NM_001374457, intron 1 of 33)	intron (NM_001374457, intron 1 of 33)	1285	NM_001128849	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
77385	chr15	82952171	82952900	+	0	NA	exon (NM_199330, exon 1 of 9)	exon (NM_199330, exon 1 of 9)	185	NM_004839	9455		NM_004839	ENSG00000103942	HOMER2	ACPD|CPD|DFNA68|HOMER-2|VESL-2	homer scaffold protein 2	protein-coding
190038	chr5	177514401	177515150	+	0	NA	exon (NM_001321830, exon 9 of 17)	exon (NM_001321830, exon 9 of 17)	2186	NM_001321732	51428		NM_016222	ENSG00000183258	DDX41	ABS|MPLPF	DEAD-box helicase 41	protein-coding
185999	chr5	133825721	133826500	+	0	NA	Intergenic	Intergenic	-87567	NR_131252	105664404		NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
6572	chr1	28746301	28746500	+	0	NA	intron (NM_016258, intron 4 of 4)	intron (NM_016258, intron 4 of 4)	9460	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
226267	chr9	68241171	68242230	+	0	NA	promoter-TSS (NM_201453)	promoter-TSS (NM_201453)	-189	NM_001286836	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
66227	chr14	61329951	61330130	+	0	NA	intron (NM_006255, intron 1 of 13)	L2b|LINE|L2	8597	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
76023	chr15	72101321	72101580	+	0	NA	intron (NM_006901, intron 1 of 41)	SVA_D|Retroposon|SVA	-12808	NM_001166340	123228		NM_145204	ENSG00000166192	SENP8	DEN1|NEDP1|PRSC2	SUMO peptidase family member, NEDD8 specific	protein-coding
25372	chr10	6458721	6458980	+	0	NA	intron (NM_001282644, intron 14 of 17)	intron (NM_001282644, intron 14 of 17)	108534	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
82800	chr16	21466401	21466600	+	0	NA	intron (NR_027155, intron 11 of 28)	AluJb|SINE|Alu	-32045	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
90412	chr17	1332521	1332900	+	0	NA	Intergenic	Intergenic	53048	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
196666	chr6	44385451	44386000	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-1981	NM_001253	988		NM_001253	ENSG00000096401	CDC5L	CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1	cell division cycle 5 like	protein-coding
37016	chr11	12062171	12062330	+	0	NA	TTS (NR_135109)	TTS (NR_135109)	31375	NR_135109	105376554		NR_135109	ENSG00000254486	LINC02547	-	long intergenic non-protein coding RNA 2547	ncRNA
159870	chr3	16803171	16803330	+	0	NA	Intergenic	MIRb|SINE|MIR	-81705	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
129089	chr2	65116821	65117080	+	0	NA	intron (NM_004161, intron 1 of 5)	intron (NM_004161, intron 1 of 5)	13156	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
159345	chr3	13142071	13142300	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	-68756	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
209964	chr7	92689671	92690030	+	0	NA	intron (NM_001145306, intron 4 of 7)	L1PA12|LINE|L1	-99460	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
70321	chr14	101831551	101831880	+	0	NA	5' UTR (NM_001352916, exon 2 of 14)	5' UTR (NM_001352916, exon 2 of 14)	21852	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
25901	chr10	11283601	11284930	+	0	NA	intron (NM_001326330, intron 8 of 12)	(GATGGAT)n|Simple_repeat|Simple_repeat	60409	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
21909	chr1	207824851	207825030	+	0	NA	Intergenic	Intergenic	-2237	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
206989	chr7	38334551	38334930	+	0	NA	Intergenic	Intergenic	-6837	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
136987	chr2	190527601	190527800	+	0	NA	intron (NR_136298, intron 1 of 8)	MER1B|DNA|hAT-Charlie	7022	NM_001142645	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
126064	chr2	25711801	25712000	+	0	NA	Intergenic	MER66D|LTR|ERV1	-38226	NM_001256304	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
194463	chr6	33191671	33192800	+	0	NA	exon (NM_001163771, exon 1 of 5).3	exon (NM_001163771, exon 1 of 5).3	232	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
11051	chr1	85001171	85001530	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-4237	NM_153259	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
15059	chr1	148443751	148444050	+	0	NA	intron (NR_027468, intron 1 of 4)	MER94B|DNA|hAT-Blackjack	16020	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
163576	chr3	51948021	51948280	+	0	NA	intron (NM_001003931, intron 10 of 10)	L2c|LINE|L2	5787	NM_001370240	10039		NM_005485	ENSG00000041880	PARP3	ADPRT3|ADPRTL2|ADPRTL3|ARTD3|IRT1|PADPRT-3	poly(ADP-ribose) polymerase family member 3	protein-coding
195065	chr6	35508051	35508750	+	0	NA	intron (NM_001289395, intron 7 of 13)	MamRep605|LTR?|LTR?	4496	NM_003322	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
56018	chr12	110371821	110372280	+	0	NA	TTS (NM_001385208)	TTS (NM_001385208)	29899	NM_001385210	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
100871	chr17	64321071	64321730	+	0	NA	3' UTR (NM_000442, exon 16 of 16)	3' UTR (NM_000442, exon 16 of 16)	-58140	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
182936	chr5	70902271	70902830	+	0	NA	intron (NM_022978, intron 2 of 2).3	AluSx|SINE|Alu	1881	NM_022978	728492		NM_022978	ENSG00000205572	SERF1B	FAM2B|H4F5C|h4F5	small EDRK-rich factor 1B	protein-coding
75757	chr15	68396121	68396380	+	0	NA	intron (NM_001004439, intron 2 of 29)	(ATCA)n|Simple_repeat|Simple_repeat	35913	NM_001004439	22801		NM_012211	ENSG00000137809	ITGA11	HsT18964	integrin subunit alpha 11	protein-coding
123627	chr19	54601901	54602100	+	0	NA	non-coding (NR_103501, exon 9 of 9).4	non-coding (NR_103501, exon 9 of 9).4	7803	NM_001278319	11024		NM_006863	ENSG00000104974	LILRA1	CD85I|LIR-6|LIR6	leukocyte immunoglobulin like receptor A1	protein-coding
49285	chr12	19757401	19757600	+	0	NA	Intergenic	Intergenic	-257185	NR_040098	100506393		NR_040098	ENSG00000256287	LINC02398	-	long intergenic non-protein coding RNA 2398	ncRNA
212543	chr7	128857671	128857830	+	0	NA	intron (NM_001458, intron 46 of 47)	intron (NM_001458, intron 46 of 47)	4876	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
115856	chr19	16543901	16544100	+	0	NA	Intergenic	AluSx|SINE|Alu	-1563	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
98198	chr17	46125051	46125580	+	0	NA	intron (NM_015443, intron 2 of 14).2	Tigger1|DNA|TcMar-Tigger	67467	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
203338	chr6	170248401	170248600	+	0	NA	Intergenic	Intergenic	14069	NR_002787	154449		NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
95376	chr17	35879721	35881380	+	0	NA	promoter-TSS (NM_001278736)	promoter-TSS (NM_001278736)	-190	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
20416	chr1	198198871	198199350	+	0	NA	intron (NM_133494, intron 1 of 9)	LTR16|LTR|ERVL	42112	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
94349	chr17	28896821	28899080	+	0	NA	promoter-TSS (NM_001330170)	promoter-TSS (NM_001330170)	-217	NM_001330170	2319		NM_004475	ENSG00000132589	FLOT2	ECS-1|ECS1|ESA|ESA1|M17S1	flotillin 2	protein-coding
229982	chr9	126807321	126807580	+	0	NA	intron (NM_001135776, intron 1 of 1)	Kanga1a|DNA|TcMar-Tc2	2410	NM_014007	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
173143	chr4	6663601	6663800	+	0	NA	Intergenic	LTR16A|LTR|ERVL	10181	NR_134665	105374366		NR_134664	ENSG00000251580	LINC02482	-	long intergenic non-protein coding RNA 2482	ncRNA
7625	chr1	35555571	35555730	+	0	NA	intron (NM_024874, intron 1 of 20)	intron (NM_024874, intron 1 of 20)	1753	NM_024874	79932		NM_024874	ENSG00000142687	KIAA0319L	AAVR|AAVRL	KIAA0319 like	protein-coding
214323	chr7	149281271	149281430	+	0	NA	intron (NR_144367, intron 6 of 6)	intron (NR_144367, intron 6 of 6)	-3931	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
98405	chr17	46588051	46588350	+	0	NA	Intergenic	Intergenic	-2469	NR_040116	4905		NM_006178	ENSG00000073969	NSF	DEE96|SEC18|SKD2	N-ethylmaleimide sensitive factor, vesicle fusing ATPase	protein-coding
98891	chr17	48580251	48580900	+	0	NA	promoter-TSS (NR_029608)	promoter-TSS (NR_029608)	-628	NR_029608	406902		NR_029608	ENSG00000284038	MIR10A	MIRN10A|hsa-mir-10a|miRNA10A|mir-10a	microRNA 10a	ncRNA
191294	chr6	6612021	6613050	+	0	NA	intron (NM_004271, intron 1 of 4)	LTR12C|LTR|ERV1	10291	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
234371	chrX	15757951	15758630	+	0	NA	intron (NR_160544, intron 5 of 11)	MLT1A0|LTR|ERVL-MaLR	20020	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
214247	chr7	148882801	148883700	+	0	NA	5' UTR (NM_001203249, exon 1 of 19)	5' UTR (NM_001203249, exon 1 of 19)	235	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
62642	chr13	101520721	101521180	+	0	NA	intron (NM_001271756, intron 1 of 9)	intron (NM_001271756, intron 1 of 9)	30998	NM_001271756	9358		NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
229213	chr9	114893521	114893980	+	0	NA	3' UTR (NM_001252290, exon 5 of 5)	3' UTR (NM_001252290, exon 5 of 5)	36841	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
44688	chr11	111417171	111417330	+	0	NA	non-coding (NR_046085, exon 1 of 4)	non-coding (NR_046085, exon 1 of 4)	936	NR_046085	100132078		NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
9791	chr1	53581951	53583050	+	0	NA	intron (NM_147193, intron 3 of 9)	MIR3|SINE|MIR	123101	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
10030	chr1	56877901	56878100	+	0	NA	intron (NM_000562, intron 4 of 10)	MLT1B|LTR|ERVL-MaLR	23203	NM_000562	731		NM_000562	ENSG00000157131	C8A	-	complement C8 alpha chain	protein-coding
212270	chr7	123532421	123533200	+	0	NA	non-coding (NR_104244, exon 1 of 14)	non-coding (NR_104244, exon 1 of 14)	138	NM_001321293	154865		NM_178827	ENSG00000164675	IQUB	TRS4	IQ motif and ubiquitin domain containing	protein-coding
98356	chr17	46345221	46345480	+	0	NA	intron (NM_001039083, intron 3 of 3).5	AluJb|SINE|Alu	16416	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
97497	chr17	43902101	43902700	+	0	NA	promoter-TSS (NM_001278375)	promoter-TSS (NM_001278375)	-838	NM_001278375	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
64120	chr14	22836701	22836900	+	0	NA	5' UTR (NM_004995, exon 1 of 10)	5' UTR (NM_004995, exon 1 of 10)	215	NM_004995	4323		NM_004995	ENSG00000157227	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14	protein-coding
225500	chr9	35660871	35661230	+	0	NA	exon (NM_001195200, exon 6 of 6)	exon (NM_001195200, exon 6 of 6)	2758	NM_174923	203260		NM_174923	ENSG00000159884	CCDC107	PSEC0222	coiled-coil domain containing 107	protein-coding
173392	chr4	7971321	7971580	+	0	NA	intron (NM_001286688, intron 14 of 14)	intron (NM_001286688, intron 14 of 14)	-31524	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
138670	chr2	212979821	212980100	+	0	NA	Intergenic	Intergenic	-53624	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
105054	chr17	82074921	82075880	+	0	NA	Intergenic	AluJo|SINE|Alu	-9596	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
146170	chr20	48736421	48736980	+	0	NA	intron (NM_020820, intron 3 of 39)	intron (NM_020820, intron 3 of 39)	91299	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
68786	chr14	91207151	91207450	+	0	NA	intron (NM_001358311, intron 12 of 13)	L1MCa|LINE|L1	37404	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
87751	chr16	75239071	75239230	+	0	NA	promoter-TSS (NM_001170721)	promoter-TSS (NM_001170721)	-490	NM_001170721	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
1909	chr1	6462171	6462780	+	0	NA	intron (NM_148966, intron 7 of 8)	intron (NM_148966, intron 7 of 8)	3698	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
238176	chrX	136873171	136873700	+	0	NA	TTS (NR_028477)	TTS (NR_028477)	5836	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
234658	chrX	20137671	20138380	+	0	NA	intron (NM_001412, intron 2 of 6)	AluSg|SINE|Alu	-1612	NR_023358	100158262		NR_023358		SCARNA9L	-	small Cajal body-specific RNA 9 like	ncRNA
120118	chr19	42189101	42189700	+	0	NA	Intergenic	Intergenic	28277	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
156171	chr22	40217571	40218500	+	0	NA	intron (NM_015088, intron 1 of 20)	MARNA|DNA|TcMar-Mariner	40110	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
58464	chr12	132134671	132135500	+	0	NA	Intergenic	CpG	9234	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
18079	chr1	160664521	160666630	+	0	NA	Intergenic	Intergenic	-18264	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
88024	chr16	81076501	81077900	+	0	NA	promoter-TSS (NM_001100873)	promoter-TSS (NM_001100873)	38	NM_152337	123775		NM_152337	ENSG00000166455	C16orf46	-	chromosome 16 open reading frame 46	protein-coding
214029	chr7	143287671	143289150	+	0	NA	promoter-TSS (NM_032983)	promoter-TSS (NM_032983)	59	NM_032983	835		NM_001224	ENSG00000106144	CASP2	CASP-2|ICH1|MRT80|NEDD-2|NEDD2|PPP1R57	caspase 2	protein-coding
23480	chr1	228627821	228628490	+	0	NA	TTS (NR_023371)	TTS (NR_023371)	111	NR_023371	100169760		NR_023371	ENSG00000201321	RNA5S9	RN5S9	RNA, 5S ribosomal 9	rRNA
234908	chrX	32448321	32448580	+	0	NA	intron (NM_000109, intron 27 of 78)	intron (NM_000109, intron 27 of 78)	-36222	NM_004011	1756		NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85	dystrophin	protein-coding
78777	chr15	99343901	99344250	+	0	NA	intron (NM_144598, intron 6 of 9)	intron (NM_144598, intron 6 of 9)	86550	NR_073383	7190		NR_073383	ENSG00000259706	HSP90B2P	GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1	heat shock protein 90 beta family member 2, pseudogene	pseudo
50447	chr12	47716321	47716580	+	0	NA	exon (NM_001172439, exon 6 of 10)	exon (NM_001172439, exon 6 of 10)	9040	NM_006025	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
14930	chr1	147579451	147579750	+	0	NA	intron (NM_004326, intron 1 of 9)	intron (NM_004326, intron 1 of 9)	38099	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
201770	chr6	149953901	149955130	+	0	NA	Intergenic	CpG	-9428	NM_001317089	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
28352	chr10	47024751	47025080	+	0	NA	Intergenic	Intergenic	113193	NM_001042358	26095		NM_015605	ENSG00000204179	PTPN20	CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1	protein tyrosine phosphatase non-receptor type 20	protein-coding
86559	chr16	67199301	67200000	+	0	NA	TTS (NM_001950)	TTS (NM_001950)	519	NM_024712	79767		NM_024712	ENSG00000102890	ELMO3	CED-12|CED12|ELMO-3	engulfment and cell motility 3	protein-coding
185124	chr5	119289171	119289680	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	20666	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
3673	chr1	16486221	16486480	+	0	NA	intron (NR_023386, intron 6 of 14)	intron (NR_023386, intron 6 of 14)	6351	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
122893	chr19	50537701	50538050	+	0	NA	intron (NM_001348568, intron 2 of 2)	intron (NM_001348568, intron 2 of 2)	13167	NM_001348568	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
190974	chr6	2970071	2970300	+	0	NA	intron (NM_001195291, intron 1 of 7)	intron (NM_001195291, intron 1 of 7)	538	NM_001374516	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
206548	chr7	35625601	35625800	+	0	NA	Intergenic	Intergenic	69435	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
186873	chr5	139512771	139513030	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-30142	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
79008	chr16	20651	20950	+	0	NA	Intergenic	L1P1|LINE|L1	-2116	NR_130735	100132169		NR_130735	ENSG00000231439	WASIR2	NCRNA00286A	WASH and IL9R antisense RNA 2	ncRNA
45918	chr11	120835821	120836080	+	0	NA	intron (NM_001282473, intron 7 of 17)	Chap1_Mam|DNA|hAT-Charlie	-16835	NR_133008	105369532		NR_133008		LOC105369532	-	uncharacterized LOC105369532	ncRNA
65495	chr14	51879571	51880200	+	0	NA	intron (NM_053064, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	19273	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
39133	chr11	48341451	48341900	+	0	NA	Intergenic	MER66D|LTR|ERV1	16755	NM_001004702	256144		NM_001004702	ENSG00000176547	OR4C3	OR11-98	olfactory receptor family 4 subfamily C member 3	protein-coding
61809	chr13	75631601	75631800	+	0	NA	intron (NM_005358, intron 2 of 29)	LTR16A|LTR|ERVL	4294	NR_120411	101927155		NR_120410	ENSG00000261105	LMO7-AS1	UCHL3-AS1	LMO7 antisense RNA 1	ncRNA
104846	chr17	81839621	81840680	+	0	NA	Intergenic	AluJr|SINE|Alu	-5100	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
65801	chr14	54737271	54737630	+	0	NA	intron (NM_015589, intron 4 of 12)	intron (NM_015589, intron 4 of 12)	-17383	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
230346	chr9	128023521	128024000	+	0	NA	Intergenic	AluSx|SINE|Alu	-42771	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
114922	chr19	13959621	13960430	+	0	NA	exon (NM_138353, exon 10 of 13)	exon (NM_138353, exon 10 of 13)	-6633	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
129383	chr2	68805471	68805830	+	0	NA	intron (NM_001364819, intron 4 of 10)	intron (NM_001364819, intron 4 of 10)	30740	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
196698	chr6	44925051	44925830	+	0	NA	intron (NM_001350324, intron 10 of 11)	intron (NM_001350324, intron 10 of 11)	272330	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
160288	chr3	27345371	27345830	+	0	NA	intron (NM_199347, intron 5 of 24)	intron (NM_199347, intron 5 of 24)	23783	NM_199347	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
43256	chr11	75536701	75538100	+	0	NA	Intergenic	L2c|LINE|L2	-11459	NM_030792	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
35237	chr11	839201	839480	+	0	NA	TTS (NM_004357)	TTS (NM_004357)	3189	NM_021128	5441		NM_021128	ENSG00000177700	POLR2L	RBP10|RPABC5|RPB10|RPB10beta|RPB7.6|hRPB7.6	RNA polymerase II, I and III subunit L	protein-coding
65108	chr14	43343921	43344000	+	0	NA	Intergenic	AluYa5|SINE|Alu	1163323	NM_032135	84075		NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
183884	chr5	87297471	87298450	+	0	NA	intron (NM_022650, intron 1 of 24)	L1MC1|LINE|L1	25668	NR_130929	644285		NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
135259	chr2	159734821	159735280	+	0	NA	intron (NM_001282807, intron 1 of 8)	intron (NM_001282807, intron 1 of 8)	1086	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
205257	chr7	8130371	8130930	+	0	NA	intron (NR_146926, intron 12 of 13)	intron (NR_146926, intron 12 of 13)	131517	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
65460	chr14	51773971	51774780	+	0	NA	Intergenic	SATR1|Satellite|Satellite	57092	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
29300	chr10	69320621	69320980	+	0	NA	intron (NM_000188, intron 1 of 17)	intron (NM_000188, intron 1 of 17)	1953	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
11763	chr1	92357701	92358130	+	0	NA	intron (NM_024813, intron 11 of 12)	intron (NM_024813, intron 11 of 12)	58856	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
235628	chrX	48427271	48427580	+	0	NA	Intergenic	AluSz|SINE|Alu	-15515	NM_001040612	548313		NM_001034832	ENSG00000269791	SSX4B	CT5.4	SSX family member 4B	protein-coding
189858	chr5	177132321	177135880	+	0	NA	promoter-TSS (NM_001365684)	promoter-TSS (NM_001365684)	-129	NM_001365684	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
18995	chr1	169460171	169460780	+	0	NA	5' UTR (NM_001300968, exon 1 of 7)	5' UTR (NM_001300968, exon 1 of 7)	194	NM_001300968	57821		NM_021179	ENSG00000117477	CCDC181	C1orf114	coiled-coil domain containing 181	protein-coding
104024	chr17	80122671	80122830	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	21169	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
65261	chr14	49946541	49947400	+	0	NA	Intergenic	Intergenic	-19429	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
201558	chr6	149271421	149272280	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	-14299	NR_149096	105378049		NR_149096	ENSG00000225924	TAB2-AS1	-	TAB2 antisense RNA 1	ncRNA
191439	chr6	10587621	10587880	+	0	NA	intron (NM_145655, intron 1 of 2)	intron (NM_145655, intron 1 of 2)	1990	NM_145655	2651		NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein-coding
61269	chr13	50084021	50084280	+	0	NA	intron (NR_109974, intron 2 of 6)	AluSg|SINE|Alu	1981	NR_109974	10301		NM_005887	ENSG00000176124	DLEU1	BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6	deleted in lymphocytic leukemia 1	ncRNA
207170	chr7	43603221	43603850	+	0	NA	intron (NM_004760, intron 2 of 6)	Tigger4b|DNA|TcMar-Tigger	20427	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
33386	chr10	117547471	117547950	+	0	NA	intron (NM_004098, intron 2 of 2)	intron (NM_004098, intron 2 of 2)	-2642	NR_002791	196047		NR_002791	ENSG00000229847	EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
183005	chr5	72366321	72366580	+	0	NA	3' UTR (NM_024754, exon 10 of 10)	3' UTR (NM_024754, exon 10 of 10)	46077	NM_024754	79810		NM_024754	ENSG00000049883	PTCD2	-	pentatricopeptide repeat domain 2	protein-coding
107676	chr18	49325901	49326100	+	0	NA	intron (NM_001374444, intron 3 of 10)	intron (NM_001374444, intron 3 of 10)	134645	NM_001374429	54808		NM_017653	ENSG00000141627	DYM	DMC|SMC	dymeclin	protein-coding
155877	chr22	39501751	39503050	+	0	NA	non-coding (NR_130790, exon 1 of 7)	non-coding (NR_130790, exon 1 of 7)	170	NR_130789	54471		NM_013298	ENSG00000100335	MIEF1	AltMIEF1|D3A|HSU79252|L0R8F8|MID51|MIEF1-MP|OPA14|SMCR7L|dJ1104E15.3	mitochondrial elongation factor 1	protein-coding
193525	chr6	30589651	30589750	+	0	NA	exon (NM_001025091, exon 21 of 25).2	exon (NM_001025091, exon 21 of 25).2	5368	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
239476	chrY	56735471	56735880	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-218580	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
40833	chr11	64996801	64997280	+	0	NA	promoter-TSS (NM_138456)	promoter-TSS (NM_138456)	-69	NM_138456	116071		NM_138456	ENSG00000168062	BATF2	SARI	basic leucine zipper ATF-like transcription factor 2	protein-coding
179834	chr5	476121	476380	+	0	NA	exon (NM_004174, exon 13 of 17)	exon (NM_004174, exon 13 of 17)	3014	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
215059	chr7	152758651	152758750	+	0	NA	Intergenic	Intergenic	-1049	NM_001350946	57180		NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	actin related protein 3B	protein-coding
22612	chr1	223393121	223393850	+	0	NA	promoter-TSS (NM_152610)	promoter-TSS (NM_152610)	70	NM_152610	164127		NM_152610	ENSG00000178395	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
18960	chr1	168557571	168558050	+	0	NA	Intergenic	Intergenic	-13813	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
87609	chr16	74365021	74365280	+	0	NA	intron (NR_026950, intron 1 of 14)	AluSx|SINE|Alu	3105	NR_026950	283922		NR_026950	ENSG00000290890	PDPR2P	-	pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene	pseudo
91414	chr17	4706301	4706950	+	0	NA	Intergenic	L2a|LINE|L2	2395	NR_103482	101559451		NR_103482	ENSG00000244184	PELP1-DT	-	PELP1 divergent transcript	ncRNA
225339	chr9	34635801	34636050	+	0	NA	intron (NM_001282209, intron 2 of 2)	intron (NM_001282209, intron 2 of 2)	1862	NM_001282205	10280		NM_005866	ENSG00000147955	SIGMAR1	ALS16|DSMA2|HMNR2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding
9784	chr1	53555701	53556300	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	96601	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
60446	chr13	41011171	41011830	+	0	NA	intron (NM_001370329, intron 1 of 9)	AluJb|SINE|Alu	7816	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
152479	chr22	20803971	20804200	+	0	NA	intron (NM_001362863, intron 11 of 53)	intron (NM_001362863, intron 11 of 53)	29972	NM_000185	3053		NM_000185	ENSG00000099937	SERPIND1	D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10	serpin family D member 1	protein-coding
83627	chr16	28266021	28266550	+	0	NA	Intergenic	AluJr|SINE|Alu	-26240	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
73015	chr15	40756851	40757450	+	0	NA	Intergenic	Intergenic	-1814	NM_001323897	55177		NM_018145	ENSG00000137824	RMDN3	FAM82A2|FAM82C|RMD-3|RMD3|ptpip51	regulator of microtubule dynamics 3	protein-coding
47735	chr12	6486171	6486330	+	0	NA	Intergenic	AluSx1|SINE|Alu	7012	NM_016497	51258		NM_016497	ENSG00000111639	MRPL51	CDA09|HSPC241|MRP64|bMRP64|mL51	mitochondrial ribosomal protein L51	protein-coding
180762	chr5	32154351	32155050	+	0	NA	intron (NM_022130, intron 1 of 3)	L1MC5a|LINE|L1	19619	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
202523	chr6	158572921	158573280	+	0	NA	intron (NR_164859, intron 1 of 16)	intron (NR_164859, intron 1 of 16)	13009	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
65592	chr14	52131701	52132100	+	0	NA	Intergenic	Intergenic	-62841	NM_007361	22795		NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
54434	chr12	91634951	91635280	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-452298	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
41149	chr11	65595201	65596130	+	0	NA	exon (NM_005714, exon 1 of 2)	exon (NM_005714, exon 1 of 2)	135	NM_033347	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
45141	chr11	117196971	117197330	+	0	NA	3' UTR (NM_001040455, exon 26 of 26)	3' UTR (NM_001040455, exon 26 of 26)	-2144	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
130843	chr2	87217801	87218430	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	23329	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
172290	chr4	1566101	1567350	+	0	NA	Intergenic	Intergenic	117266	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
229886	chr9	126507771	126507930	+	0	NA	TTS (NM_033446)	TTS (NM_033446)	-97346	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
147548	chr20	59938521	59939130	+	0	NA	3' UTR (NM_006242, exon 1 of 1)	3' UTR (NM_006242, exon 1 of 1)	1480	NM_006242	5509		NM_006242	ENSG00000132825	PPP1R3D	PPP1R6	protein phosphatase 1 regulatory subunit 3D	protein-coding
232918	chr9	136878071	136878330	+	0	NA	Intergenic	AluY|SINE|Alu	-8316	NM_021138	7186		NM_021138	ENSG00000127191	TRAF2	MGC:45012|RNF117|TRAP|TRAP3	TNF receptor associated factor 2	protein-coding
184154	chr5	95633821	95634230	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-12752	NM_001375394	317671		NM_173362	ENSG00000175449	RFESD	-	Rieske Fe-S domain containing	protein-coding
39406	chr11	60838771	60839330	+	0	NA	Intergenic	MIR|SINE|MIR	-3063	NM_024098	79080		NM_024098	ENSG00000110104	CCDC86	Cgr1	coiled-coil domain containing 86	protein-coding
23281	chr1	227999251	227999630	+	0	NA	Intergenic	Intergenic	-7558	NM_033131	89780		NM_033131	ENSG00000154342	WNT3A	-	Wnt family member 3A	protein-coding
213372	chr7	135932971	135933650	+	0	NA	intron (NM_001128619, intron 3 of 3)	HAL1|LINE|L1	44049	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
115602	chr19	16051421	16052100	+	0	NA	Intergenic	MER51E|LTR|ERV1	-13927	NR_146442	105372292		NR_146442	ENSG00000267517	LINC01855	-	long intergenic non-protein coding RNA 1855	ncRNA
132070	chr2	101269151	101269500	+	0	NA	exon (NM_017546, exon 7 of 7)	exon (NM_017546, exon 7 of 7)	3724	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
163451	chr3	50604501	50604700	+	0	NA	Intergenic	Intergenic	7174	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
92616	chr17	10059651	10059950	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-23143	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
45848	chr11	119386401	119386800	+	0	NA	intron (NR_034160, intron 1 of 3)	AluY|SINE|Alu	4822	NR_034160	100499227		NR_034160		USP2-AS1	THY1-AS1|gLINC	USP2 antisense RNA 1	ncRNA
222396	chr8	134044421	134044680	+	0	NA	Intergenic	Intergenic	158054	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
78117	chr15	90315201	90315430	+	0	NA	Intergenic	AluSx3|SINE|Alu	34132	NR_028287	23766		NM_032568		GABARAPL3	ATG8D	GABA type A receptor associated protein like 3 (pseudogene)	pseudo
59830	chr13	30441351	30441450	+	0	NA	Intergenic	Intergenic	18907	NM_001355247	171222		NM_001355247	ENSG00000236444	UBE2L5	UBCH7N2|UBE2L5P	ubiquitin conjugating enzyme E2 L5	protein-coding
204227	chr7	2535201	2536180	+	0	NA	Intergenic	AluSx1|SINE|Alu	8616	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
182832	chr5	69220851	69221150	+	0	NA	intron (NM_033281, intron 1 of 3)	SVA_A|Retroposon|SVA	3240	NM_033281	92259		NM_033281	ENSG00000134056	KGD4	DC47|MRP-S36|MRPS36	alpha-ketoglutarate dehydrogenase subunit 4	protein-coding
58787	chr12	132758601	132759200	+	0	NA	intron (NM_015114, intron 1 of 12)	intron (NM_015114, intron 1 of 12)	2932	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
134229	chr2	134897971	134898200	+	0	NA	intron (NR_036549, intron 1 of 4)	intron (NR_036549, intron 1 of 4)	20521	NR_036549	100129961		NR_036549		CCNT2-AS1	-	CCNT2 antisense RNA 1	ncRNA
187446	chr5	142112401	142113050	+	0	NA	intron (NM_030571, intron 1 of 7)	AluSc8|SINE|Alu	3946	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
54252	chr12	84874501	84874700	+	0	NA	intron (NM_001146335, intron 5 of 10)	intron (NM_001146335, intron 5 of 10)	38199	NM_001146335	55117		NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding
5089	chr1	24730121	24730980	+	0	NA	Intergenic	Intergenic	-14897	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
162168	chr3	46984971	46985730	+	0	NA	intron (NM_015175, intron 1 of 53)	intron (NM_015175, intron 1 of 53)	-2640	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
10541	chr1	66977971	66978300	+	0	NA	intron (NM_001077702, intron 13 of 15)	AluSx4|SINE|Alu	47879	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
204343	chr7	2856771	2857130	+	0	NA	Intergenic	Intergenic	-12642	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
174138	chr4	36229621	36230080	+	0	NA	intron (NR_146894, intron 1 of 32)	LTR37B|LTR|ERV1	14089	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
115952	chr19	16778671	16779080	+	0	NA	intron (NM_001290355, intron 12 of 20)	intron (NM_001290355, intron 12 of 20)	47683	NM_001347994	284434		NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
17336	chr1	156479051	156479580	+	0	NA	exon (NM_005920, exon 6 of 12)	exon (NM_005920, exon 6 of 12)	11372	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
119969	chr19	41895771	41897130	+	0	NA	exon (NM_199002, exon 13 of 29)	exon (NM_199002, exon 13 of 29)	12007	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
204192	chr7	2496301	2496500	+	0	NA	Intergenic	Intergenic	-16129	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
136502	chr2	177237101	177237300	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	18810	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
28506	chr10	50275771	50275930	+	0	NA	Intergenic	Intergenic	-24334	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
37228	chr11	14463421	14463950	+	0	NA	intron (NM_001144061, intron 18 of 21)	L2b|LINE|L2	36126	NM_001144061	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
134047	chr2	131151271	131152030	+	0	NA	Intergenic	Intergenic	46803	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
80338	chr16	2467201	2468020	+	0	NA	non-coding (NR_135198, exon 1 of 1)	non-coding (NR_135198, exon 1 of 1)	603	NR_135198	729652		NR_135198	ENSG00000259895	TEDC2-AS1	-	TEDC2 antisense RNA 1	ncRNA
123771	chr19	55098101	55098300	+	0	NA	intron (NM_017607, intron 6 of 21)	MIR|SINE|MIR	17808	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
204049	chr7	1948621	1949200	+	0	NA	intron (NM_001304524, intron 14 of 16)	intron (NM_001304524, intron 14 of 16)	-8339	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
150562	chr21	43102271	43102880	+	0	NA	intron (NM_001025204, intron 2 of 8).2	intron (NM_001025204, intron 2 of 8).2	4995	NM_006758	7307		NM_006758	ENSG00000160201	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
222368	chr8	133577121	133577380	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-5363	NM_173344	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
42967	chr11	73759451	73760090	+	0	NA	intron (NM_198896, intron 1 of 7)	intron (NM_198896, intron 1 of 7)	323	NM_001243719	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
25523	chr10	7315351	7315650	+	0	NA	intron (NM_001029880, intron 4 of 20)	MLT2B4|LTR|ERVL	93841	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
39355	chr11	59556171	59556630	+	0	NA	Intergenic	Intergenic	38758	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
176785	chr4	102507271	102507630	+	0	NA	intron (NM_001382625, intron 1 of 24)	(T)n|Simple_repeat|Simple_repeat	-4964	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
63139	chr13	113496001	113496230	+	0	NA	intron (NM_001349745, intron 2 of 10)	intron (NM_001349745, intron 2 of 10)	5094	NR_146221	55002		NM_017905	ENSG00000150403	TMCO3	C13orf11	transmembrane and coiled-coil domains 3	protein-coding
90515	chr17	1467751	1469050	+	0	NA	intron (NM_001080779, intron 26 of 31)	intron (NM_001080779, intron 26 of 31)	-12168	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
229507	chr9	122332251	122332350	+	0	NA	TTS (NM_001346347)	TTS (NM_001346347)	-38233	NM_001271368	5742		NM_000962	ENSG00000095303	PTGS1	COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS	prostaglandin-endoperoxide synthase 1	protein-coding
77418	chr15	83447001	83447850	+	0	NA	promoter-TSS (NM_003027)	promoter-TSS (NM_003027)	84	NM_003027	6457		NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3 domain containing GRB2 like 3, endophilin A3	protein-coding
162196	chr3	47005221	47005630	+	0	NA	intron (NM_001365116, intron 39 of 52)	intron (NM_001365116, intron 39 of 52)	-6117	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
147989	chr20	63011651	63012430	+	0	NA	intron (NR_033370, intron 1 of 4)	PRIMA41-int|LTR|ERV1	2657	NR_033370	63930		NR_033370	ENSG00000272259	LINC01749	-	long intergenic non-protein coding RNA 1749	ncRNA
173675	chr4	14926221	14926800	+	0	NA	intron (NR_038857, intron 7 of 7)	L2a|LINE|L2	-38341	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
114826	chr19	13820521	13820780	+	0	NA	intron (NM_023072, intron 9 of 12)	intron (NM_023072, intron 9 of 12)	15709	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
82295	chr16	15599551	15599850	+	0	NA	intron (NM_001184998, intron 25 of 26).2	intron (NM_001184998, intron 25 of 26).2	11395	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
30310	chr10	75395271	75395630	+	0	NA	intron (NR_120651, intron 1 of 3)	CpG	-6078	NR_024421	100131213		NR_024421	ENSG00000237149	ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	ncRNA
57375	chr12	121799051	121800300	+	0	NA	intron (NR_152738, intron 4 of 4)	intron (NR_152738, intron 4 of 4)	3271	NR_152738	338799		NM_178538	ENSG00000212694	LINC01089	LIMT	long intergenic non-protein coding RNA 1089	ncRNA
234244	chrX	13085471	13086230	+	0	NA	Intergenic	Intergenic	-41230	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
216528	chr8	20866221	20866480	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-87283	NR_130774	102467222		NR_130773	ENSG00000253147	LINC03023	-	long intergenic non-protein coding RNA 3023	ncRNA
133921	chr2	130355321	130356700	+	0	NA	promoter-TSS (NM_001142370)	promoter-TSS (NM_001142370)	-46	NM_001142370	26469		NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase non-receptor type 18	protein-coding
87063	chr16	68356121	68357580	+	0	NA	intron (NR_165372, intron 19 of 19)	intron (NR_165372, intron 19 of 19)	45736	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
99550	chr17	50379301	50379880	+	0	NA	intron (NM_152463, intron 7 of 8)	intron (NM_152463, intron 7 of 8)	6361	NM_152463	146956		NM_152463	ENSG00000154920	EME1	MMS4L|SLX2A	essential meiotic structure-specific endonuclease 1	protein-coding
219062	chr8	65806501	65807150	+	0	NA	intron (NM_001242318, intron 1 of 12)	L1M4|LINE|L1	-17768	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
113973	chr19	10812171	10812400	+	0	NA	exon (NM_001190716, exon 15 of 21)	exon (NM_001190716, exon 15 of 21)	5211	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
57423	chr12	121871571	121871730	+	0	NA	intron (NM_001171993, intron 1 of 15)	intron (NM_001171993, intron 1 of 15)	-12791	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
56226	chr12	111757601	111758000	+	0	NA	TTS (NM_001136538)	TTS (NM_001136538)	-9133	NM_000690	217		NM_000690	ENSG00000111275	ALDH2	ALDH-E2|ALDHI|ALDM	aldehyde dehydrogenase 2 family member	protein-coding
209250	chr7	75884701	75885300	+	0	NA	intron (NM_001346186, intron 5 of 5)	AluSx1|SINE|Alu	5966	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
126681	chr2	29923251	29923350	+	0	NA	Intergenic	Intergenic	-1714	NM_004304	238		NM_004304	ENSG00000171094	ALK	ALK1|CD246|NBLST3	ALK receptor tyrosine kinase	protein-coding
13929	chr1	120145871	120146130	+	0	NA	Intergenic	Intergenic	30520	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
82260	chr16	15140501	15141700	+	0	NA	Intergenic	Intergenic	-4141	NR_123721	105369154		NR_123721	ENSG00000270580	PKD1P6-NPIPP1	-	PKD1P6-NPIPP1 readthrough	pseudo
83974	chr16	29265321	29265580	+	0	NA	Intergenic	Intergenic	-36837	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
742	chr1	1484871	1485480	+	0	NA	intron (NM_031921, intron 8 of 15)	CpG-107	7326	NM_001317238	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
71607	chr14	106655471	106655630	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	173111	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
98502	chr17	47423521	47424080	+	0	NA	intron (NM_152347, intron 23 of 24)	CpG	68820	NR_033934	653479		NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
225033	chr9	33150051	33150350	+	0	NA	intron (NM_001378495, intron 1 of 5)	(AT)n|Simple_repeat|Simple_repeat	-16748	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
85343	chr16	50164401	50164700	+	0	NA	intron (NM_001040284, intron 2 of 12)	AluSg7|SINE|Alu	11244	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
193847	chr6	31534871	31536280	+	0	NA	TTS (NR_003140)	TTS (NR_003140)	874	NR_003140	692233		NR_003140	ENSG00000201785	SNORD117	U83	small nucleolar RNA, C/D box 117	snoRNA
224435	chr9	15305171	15305530	+	0	NA	intron (NM_152574, intron 1 of 19)	intron (NM_152574, intron 1 of 19)	2010	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
165139	chr3	71779171	71779400	+	0	NA	intron (NM_001126128, intron 2 of 3)	intron (NM_001126128, intron 2 of 3)	5863	NM_001126128	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
17907	chr1	160192621	160193800	+	0	NA	intron (NM_001231, intron 2 of 10)	intron (NM_001231, intron 2 of 10)	2635	NM_001231	844		NM_001231	ENSG00000143318	CASQ1	CASQ|CSQ1|PDIB1|VMCQA	calsequestrin 1	protein-coding
16632	chr1	155101251	155101430	+	0	NA	Intergenic	AluYc|SINE|Alu	22503	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
215353	chr7	157380521	157381200	+	0	NA	intron (NM_001363676, intron 5 of 6)	intron (NM_001363676, intron 5 of 6)	43856	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
104942	chr17	81936551	81937650	+	0	NA	5' UTR (NM_006907, exon 1 of 7)	5' UTR (NM_006907, exon 1 of 7)	200	NM_153824	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
150475	chr21	42616401	42616950	+	0	NA	Intergenic	L1M5|LINE|L1	-1580	NR_131192	101928233		NR_131192	ENSG00000225431	LINC01671	-	long intergenic non-protein coding RNA 1671	ncRNA
116984	chr19	18881801	18882100	+	0	NA	intron (NM_021267, intron 3 of 7)	AluSx1|SINE|Alu	14208	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
15580	chr1	150571701	150572700	+	0	NA	intron (NR_104133, intron 2 of 3)	AluSx3|SINE|Alu	2352	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
155908	chr22	39556671	39556830	+	0	NA	Intergenic	MIRb|SINE|MIR	-14003	NM_021096	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
187479	chr5	142149371	142149530	+	0	NA	intron (NM_030571, intron 7 of 7)	(T)n|Simple_repeat|Simple_repeat	40671	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
7282	chr1	32379571	32379730	+	0	NA	intron (NM_018045, intron 5 of 10)	AluJo|SINE|Alu	14791	NM_018045	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
16415	chr1	154493201	154493730	+	0	NA	intron (NR_135169, intron 2 of 5)	intron (NR_135169, intron 2 of 5)	-8754	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
158983	chr3	10265521	10265850	+	0	NA	intron (NM_014760, intron 3 of 7)	AluY|SINE|Alu	-14666	NR_162141	113219470		NR_162141		MIR12127	-	microRNA 12127	ncRNA
232692	chr9	136532271	136533600	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	13113	NM_017617	4851		NM_017617	ENSG00000148400	NOTCH1	AOS5|AOVD1|TAN1|hN1	notch receptor 1	protein-coding
90134	chr17	62951	63250	+	0	NA	Intergenic	Intergenic	-74469	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
214874	chr7	151397501	151398100	+	0	NA	intron (NM_001284261, intron 2 of 4)	intron (NM_001284261, intron 2 of 4)	-11361	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
158212	chr22	50262471	50263000	+	0	NA	promoter-TSS (NM_001303252)	promoter-TSS (NM_001303252)	-925	NM_001303252	6300		NM_002969	ENSG00000188130	MAPK12	ERK-6|ERK3|ERK6|MAPK 12|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
118292	chr19	35346471	35348280	+	0	NA	TTS (NM_001185100)	TTS (NM_001185100)	1862	NR_049828	100847070		NR_049828	ENSG00000284034	MIR5196	mir-5196	microRNA 5196	ncRNA
140447	chr2	233154401	233154600	+	0	NA	intron (NM_001017915, intron 9 of 26).2	PABL_A|LTR|ERV1	94158	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
59728	chr13	29846501	29846900	+	0	NA	intron (NM_007106, intron 1 of 4)	intron (NM_007106, intron 1 of 4)	3917	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
44332	chr11	102411271	102411430	+	0	NA	intron (NM_052932, intron 2 of 4)	MER21C|LTR|ERVL	41415	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
151913	chr22	18971551	18971650	+	0	NA	intron (NR_045121, intron 1 of 2)	intron (NR_045121, intron 1 of 2)	1102	NR_110533	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
111993	chr19	4918551	4918650	+	0	NA	intron (NM_013282, intron 1 of 15)	AluSx4|SINE|Alu	8233	NM_013282	29128		NM_013282	ENSG00000276043	UHRF1	ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95	ubiquitin like with PHD and ring finger domains 1	protein-coding
155658	chr22	39016421	39017050	+	0	NA	intron (NM_014508, intron 2 of 3)	intron (NM_014508, intron 2 of 3)	2478	NM_014508	27350		NM_014508	ENSG00000244509	APOBEC3C	A3C|APOBEC1L|ARDC2|ARDC4|ARP5|PBI|bK150C2.3	apolipoprotein B mRNA editing enzyme catalytic subunit 3C	protein-coding
68761	chr14	91058721	91058980	+	0	NA	intron (NM_001322235, intron 1 of 17)	intron (NM_001322235, intron 1 of 17)	1274	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
166500	chr3	114315521	114316300	+	0	NA	TTS (NR_030293)	TTS (NR_030293)	659	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
23806	chr1	234371621	234371880	+	0	NA	Intergenic	L1ME3B|LINE|L1	1653	NR_125962	101927765		NR_125961	ENSG00000231663	COA6-AS1	-	COA6 antisense RNA 1	ncRNA
34767	chr11	201801	202650	+	0	NA	TTS (NM_001098787)	TTS (NM_001098787)	5197	NM_001098787	51272		NM_016465	ENSG00000177951	BET1L	BET1L1|GOLIM3|GS15|HSPC197	Bet1 golgi vesicular membrane trafficking protein like	protein-coding
169703	chr3	172101121	172101430	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	60744	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
189677	chr5	176396501	176396780	+	0	NA	intron (NM_007097, intron 4 of 5)	intron (NM_007097, intron 4 of 5)	-7713	NM_001256539	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
171695	chr3	197788301	197789100	+	0	NA	Intergenic	AluJr|SINE|Alu	-2526	NM_001363887	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
151282	chr21	45488101	45488300	+	0	NA	intron (NM_001379500, intron 17 of 41)	intron (NM_001379500, intron 17 of 41)	9934	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
178498	chr4	150619101	150619300	+	0	NA	intron (NM_001367550, intron 37 of 56)	intron (NM_001367550, intron 37 of 56)	37049	NM_006439	10586		NM_006439	ENSG00000181541	MAB21L2	MCOPS14|MCSKS14	mab-21 like 2	protein-coding
145527	chr20	44092851	44093250	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	94138	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
89249	chr16	88648951	88649050	+	0	NA	intron (NM_000101, intron 1 of 5)	AluSc8|SINE|Alu	2053	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
193341	chr6	30208771	30209130	+	0	NA	intron (NM_003449, intron 1 of 9).3	(TG)n|Simple_repeat|Simple_repeat	4456	NM_003449	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
40180	chr11	62895371	62895950	+	0	NA	Intergenic	Intergenic	13961	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
219178	chr8	66540321	66540850	+	0	NA	Intergenic	Intergenic	47019	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
110540	chr19	2091521	2091780	+	0	NA	intron (NM_130807, intron 1 of 4)	AluSx1|SINE|Alu	4676	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
200041	chr6	129720101	129720300	+	0	NA	Intergenic	Intergenic	-10023	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
62857	chr13	110455821	110456200	+	0	NA	TTS (NM_001267044)	TTS (NM_001267044)	7277	NM_001267044	100129836		NM_001267044	ENSG00000224821	COL4A2-AS2	-	COL4A2 antisense RNA 2	ncRNA
63337	chr13	114019471	114020630	+	0	NA	intron (NM_001320822, intron 9 of 23).2	intron (NM_001320822, intron 9 of 23).2	-45974	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
152446	chr22	20603621	20603880	+	0	NA	Intergenic	AluSg|SINE|Alu	-85805	NR_024592	266697		NR_024592		POM121L4P	POM121L1|POM121L1P	POM121 transmembrane nucleoporin like 4, pseudogene	pseudo
36643	chr11	7673821	7674400	+	0	NA	promoter-TSS (NR_126508)	promoter-TSS (NR_126508)	157	NM_001302826	51700		NM_016229	ENSG00000166394	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
2148	chr1	8394951	8396050	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	28332	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
169954	chr3	179145271	179145630	+	0	NA	intron (NR_125401, intron 1 of 2)	AluSx4|SINE|Alu	2523	NR_125401	101928739		NR_125401	ENSG00000229102	PIK3CA-DT	-	PIK3CA divergent transcript	ncRNA
141002	chr2	238127221	238127850	+	0	NA	intron (NM_001308370, intron 1 of 3)	intron (NM_001308370, intron 1 of 3)	145	NM_001308370	339768		NM_194312	ENSG00000144488	ESPNL	-	espin like	protein-coding
211143	chr7	102546601	102546900	+	0	NA	intron (NM_001097615, intron 4 of 8)	AluSx|SINE|Alu	-1962	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
239449	chrY	56713371	56713530	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-240805	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
109447	chr19	740401	740600	+	0	NA	intron (NM_002579, intron 8 of 8)	CpG-12921	-10612	NM_173481	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
55287	chr12	103326271	103326430	+	0	NA	intron (NM_001099336, intron 4 of 5)	L2a|LINE|L2	169618	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
157832	chr22	47213201	47214130	+	0	NA	Intergenic	Intergenic	-131906	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
144682	chr20	36437201	36437400	+	0	NA	intron (NM_001365621, intron 4 of 12)	intron (NM_001365621, intron 4 of 12)	-24168	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
121791	chr19	47854571	47854730	+	0	NA	Intergenic	MER90a|LTR|ERV1	31665	NM_003167	6822		NM_003167	ENSG00000105398	SULT2A1	DHEA-ST|DHEA-ST8|DHEAS|HST|ST2|ST2A1|ST2A3|STD|SULT2A3|hSTa	sulfotransferase family 2A member 1	protein-coding
237647	chrX	124238071	124238650	+	0	NA	Intergenic	Intergenic	-94300	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
107649	chr18	48977701	48978430	+	0	NA	Intergenic	Intergenic	-27354	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
93802	chr17	20517171	20517610	+	0	NA	Intergenic	Intergenic	-12892	NR_029393	644945		NR_029393	ENSG00000291196	KRT16P3	KERSMCR	keratin 16 pseudogene 3	pseudo
7611	chr1	35442701	35443300	+	0	NA	exon (NM_024874, exon 18 of 21)	exon (NM_024874, exon 18 of 21)	-76923	NR_046659	100861513		NR_046659	ENSG00000227409	ZMYM4-AS1	-	ZMYM4 antisense RNA 1	ncRNA
121460	chr19	47047301	47049800	+	0	NA	promoter-TSS (NM_017854)	promoter-TSS (NM_017854)	74	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
5678	chr1	26344701	26344900	+	0	NA	exon (NM_001039775, exon 2 of 20)	exon (NM_001039775, exon 2 of 20)	9330	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
136935	chr2	190119101	190119570	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-18442	NM_001042521	84281		NM_032321	ENSG00000187699	C2orf88	smAKAP	chromosome 2 open reading frame 88	protein-coding
115420	chr19	15301521	15301780	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluY|SINE|Alu	-21199	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
79713	chr16	1313501	1314100	+	0	NA	intron (NM_194259, intron 2 of 7)	intron (NM_194259, intron 2 of 7)	4164	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
169604	chr3	171187701	171188000	+	0	NA	intron (NM_001161560, intron 7 of 31)	intron (NM_001161560, intron 7 of 31)	-81091	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
59183	chr13	22059751	22060130	+	0	NA	Intergenic	L2a|LINE|L2	-150345	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
77850	chr15	88659151	88659780	+	0	NA	Intergenic	Intergenic	20449	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
168395	chr3	142134951	142135450	+	0	NA	intron (NM_001178139, intron 1 of 12)	AluJr|SINE|Alu	14344	NM_001375773	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
130221	chr2	84719521	84719980	+	0	NA	intron (NM_001370, intron 59 of 76)	AluJr|SINE|Alu	161334	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
86080	chr16	57627351	57627650	+	0	NA	intron (NM_001370439, intron 1 of 13)	intron (NM_001370439, intron 1 of 13)	-1130	NM_001370429	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
142748	chr20	10445001	10445200	+	0	NA	intron (NM_001009608, intron 1 of 7)	LTR84b|LTR|ERVL	9795	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
196531	chr6	43891301	43891700	+	0	NA	intron (NR_024478, intron 1 of 1)	intron (NR_024478, intron 1 of 1)	472	NR_024478	100132354		NR_024478	ENSG00000289313	LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
217258	chr8	27313201	27313400	+	0	NA	intron (NM_173174, intron 3 of 35)	THE1D|LTR|ERVL-MaLR	1822	NM_173174	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
110273	chr19	1815571	1816000	+	0	NA	TTS (NR_031730)	TTS (NR_031730)	453	NR_031730	100302210		NR_031730	ENSG00000284216	MIR1909	MIRN1909|hsa-mir-1909|mir-1909	microRNA 1909	ncRNA
207723	chr7	47978801	47980050	+	0	NA	non-coding (NR_037917, exon 1 of 9)	non-coding (NR_037917, exon 1 of 9)	190	NM_001363683	3364		NM_004507	ENSG00000136273	HUS1	hHUS1	HUS1 checkpoint clamp component	protein-coding
7954	chr1	37595471	37596500	+	0	NA	promoter-TSS (NM_001323623)	promoter-TSS (NM_001323623)	0	NM_001323623	29889		NM_013285	ENSG00000134697	GNL2	HUMAUANTIG|NGP1|Ngp-1|Nog2|Nug2	G protein nucleolar 2	protein-coding
165267	chr3	75431851	75432450	+	0	NA	intron (NR_024241, intron 2 of 7)	Charlie4z|DNA|hAT-Charlie	2965	NR_024241	692099		NR_024241	ENSG00000291223	FAM86DP	FAM86D	family with sequence similarity 86 member D, pseudogene	pseudo
78319	chr15	90953001	90953480	+	0	NA	exon (NM_001323620, exon 19 of 20)	exon (NM_001323620, exon 19 of 20)	-1636	NM_001017919	91433		NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
196816	chr6	46128451	46128800	+	0	NA	intron (NM_001370650, intron 1 of 6)	MIRb|SINE|MIR	1194	NM_001370650	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
87470	chr16	71610971	71611430	+	0	NA	Intergenic	Intergenic	-14984	NM_001271329	91862		NM_052858	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
228195	chr9	97703801	97704430	+	0	NA	intron (NR_147055, intron 10 of 10)	intron (NR_147055, intron 10 of 10)	-6706	NR_149094	7507		NM_000380	ENSG00000136936	XPA	XP1|XPAC	XPA, DNA damage recognition and repair factor	protein-coding
22957	chr1	226034301	226034900	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-27231	NM_001379043	3020		NM_002107	ENSG00000163041	H3-3A	BRYLIB1|H3-3B|H3.3A|H3F3|H3F3A	H3.3 histone A	protein-coding
54772	chr12	94147701	94150070	+	0	NA	5' UTR (NM_005761, exon 1 of 31)	5' UTR (NM_005761, exon 1 of 31)	308	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
211392	chr7	105024371	105024530	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	10245	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
186324	chr5	134629501	134629700	+	0	NA	intron (NM_016103, intron 1 of 6)	AluSg|SINE|Alu	3228	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
197188	chr6	63578421	63578680	+	0	NA	intron (NM_001385268, intron 3 of 5)	intron (NM_001385268, intron 3 of 5)	6070	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
82486	chr16	17346751	17347900	+	0	NA	intron (NM_022166, intron 2 of 11)	intron (NM_022166, intron 2 of 11)	123635	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
41347	chr11	65931971	65932730	+	0	NA	Intergenic	LTR78|LTR|ERV1	12924	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
175533	chr4	74456171	74456330	+	0	NA	Intergenic	L2c|LINE|L2	11114	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
222431	chr8	134719321	134719580	+	0	NA	Intergenic	MIR3|SINE|MIR	-6419	NM_001289394	57623		NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
208432	chr7	66825571	66825800	+	0	NA	intron (NR_003934, intron 7 of 10)	intron (NR_003934, intron 7 of 10)	19141	NR_003934	729156		NR_003934	ENSG00000291206	GTF2IRD1P1	-	GTF2I repeat domain containing 1 pseudogene 1	pseudo
207624	chr7	45002621	45003000	+	0	NA	intron (NM_001167934, intron 1 of 8)	L2a|LINE|L2	2609	NM_001363459	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
21403	chr1	205287951	205288950	+	0	NA	Intergenic	Intergenic	31253	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
63906	chr14	21913821	21914150	+	0	NA	Intergenic	Intergenic	-242968	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
72701	chr15	38610421	38611800	+	0	NA	Intergenic	Intergenic	-46296	NM_005739	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
96441	chr17	40194251	40194750	+	0	NA	TTS (NR_106927)	TTS (NR_106927)	903	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
155371	chr22	38294971	38295850	+	0	NA	intron (NM_152221, intron 7 of 10)	intron (NM_152221, intron 7 of 10)	22023	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
60628	chr13	42334071	42334430	+	0	NA	Intergenic	Intergenic	62098	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
220890	chr8	104665371	104666100	+	0	NA	Intergenic	Intergenic	-76711	NM_013437	29967		NM_013437	ENSG00000147650	LRP12	ALS28|MIG13A|ST7	LDL receptor related protein 12	protein-coding
204076	chr7	2066221	2066880	+	0	NA	intron (NM_001304524, intron 10 of 16)	intron (NM_001304524, intron 10 of 16)	22502	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
128945	chr2	64606421	64607750	+	0	NA	promoter-TSS (NR_034023)	promoter-TSS (NR_034023)	-227	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
22435	chr1	220271071	220271230	+	0	NA	intron (NM_012414, intron 1 of 34)	L2c|LINE|L2	1303	NM_012414	25782		NM_012414	ENSG00000118873	RAB3GAP2	MARTS1|RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating non-catalytic protein subunit 2	protein-coding
43116	chr11	75204851	75205270	+	0	NA	3' UTR (NM_001145212, exon 11 of 11)	3' UTR (NM_001145212, exon 11 of 11)	-35714	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
162072	chr3	46874001	46874750	+	0	NA	Intergenic	Intergenic	-3346	NM_000316	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
56703	chr12	120090151	120090530	+	0	NA	intron (NR_147894, intron 8 of 8)	intron (NR_147894, intron 8 of 8)	26413	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
179007	chr4	163666471	163666830	+	0	NA	intron (NM_001166373, intron 4 of 7)	intron (NM_001166373, intron 4 of 7)	-53116	NM_017923	55016		NM_017923	ENSG00000145416	MARCHF1	MARCH-I|MARCH1|RNF171	membrane associated ring-CH-type finger 1	protein-coding
81684	chr16	11213221	11213480	+	0	NA	Intergenic	Intergenic	42832	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
145370	chr20	41162671	41162980	+	0	NA	intron (NM_182811, intron 6 of 31)	intron (NM_182811, intron 6 of 31)	-6198	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
5910	chr1	26832471	26832630	+	0	NA	exon (NM_032283, exon 2 of 8)	exon (NM_032283, exon 2 of 8)	5862	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
178466	chr4	148359721	148360180	+	0	NA	intron (NR_148974, intron 2 of 6)	intron (NR_148974, intron 2 of 6)	82464	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
145845	chr20	45882701	45882900	+	0	NA	exon (NM_080603, exon 2 of 2)	exon (NM_080603, exon 2 of 2)	1573	NM_080603	90204		NM_080603	ENSG00000168612	ZSWIM1	C20orf162	zinc finger SWIM-type containing 1	protein-coding
143106	chr20	23359351	23359450	+	0	NA	Intergenic	MER49|LTR|ERV1	-1273	NR_109884	100505683		NR_109884	ENSG00000232645	LINC01431	-	long intergenic non-protein coding RNA 1431	ncRNA
139424	chr2	222797321	222797580	+	0	NA	Intergenic	Intergenic	-63586	NM_203372	2181		NM_004457	ENSG00000123983	ACSL3	ACS3|FACL3|LACS 3|LACS3|PRO2194	acyl-CoA synthetase long chain family member 3	protein-coding
118127	chr19	34838371	34839030	+	0	NA	Intergenic	Intergenic	-5831	NR_033982	400685		NR_033982	ENSG00000267767	LINC01801	-	long intergenic non-protein coding RNA 1801	ncRNA
205763	chr7	23519971	23520130	+	0	NA	intron (NM_013293, intron 2 of 7)	AluSx|SINE|Alu	11931	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
9805	chr1	53765721	53766350	+	0	NA	non-coding (NR_033142, exon 17 of 17)	non-coding (NR_033142, exon 17 of 17)	-26871	NM_001367484	148979		NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
57890	chr12	123438151	123438650	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1667	NM_145058	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
167227	chr3	128469521	128469780	+	0	NA	intron (NR_037890, intron 2 of 2)	intron (NR_037890, intron 2 of 2)	-2402	NM_153330	165721		NM_153330	ENSG00000179407	DNAJB8	CT156|DJ6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding
49760	chr12	31763071	31763350	+	0	NA	Intergenic	AluSx1|SINE|Alu	29088	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
225682	chr9	36479821	36480230	+	0	NA	Intergenic	AluSz|SINE|Alu	-78827	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
25202	chr10	5692321	5693980	+	0	NA	intron (NM_017782, intron 1 of 20)	intron (NM_017782, intron 1 of 20)	8312	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
130433	chr2	85405301	85406400	+	0	NA	intron (NM_001256139, intron 1 of 9)	intron (NM_001256139, intron 1 of 9)	3982	NM_001320732	822		NM_001747	ENSG00000042493	CAPG	AFCP|HEL-S-66|MCP	capping actin protein, gelsolin like	protein-coding
193868	chr6	31570551	31571180	+	0	NA	intron (NR_149045, intron 1 of 1)	L1ME3|LINE|L1	-1234	NM_001159740	4049		NM_000595	ENSG00000226979	LTA	LT|TNFB|TNFSF1|TNLG1E	lymphotoxin alpha	protein-coding
19396	chr1	174148471	174148730	+	0	NA	intron (NR_121197, intron 3 of 3)	AluY|SINE|Alu	10687	NR_121197	102724601		NR_121197	ENSG00000227373	RABGAP1L-DT	-	RABGAP1L divergent transcript	ncRNA
216739	chr8	22453751	22454250	+	0	NA	intron (NM_005605, intron 1 of 13)	Tigger3b|DNA|TcMar-Tigger	12922	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
119806	chr19	41338001	41338530	+	0	NA	intron (NM_000660, intron 5 of 6)	AluSq2|SINE|Alu	15657	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
170241	chr3	184225571	184226130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4503	NM_138345	90113		NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
221258	chr8	122780801	122781900	+	0	NA	promoter-TSS (NM_001362797)	promoter-TSS (NM_001362797)	-305	NM_001362797	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
30049	chr10	73814971	73815530	+	0	NA	TTS (NM_001367535)	TTS (NM_001367535)	-3430	NR_160744	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
167343	chr3	128755321	128755580	+	0	NA	intron (NM_004637, intron 1 of 5)	L1M4c|LINE|L1	29267	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
57865	chr12	123364101	123366000	+	0	NA	promoter-TSS (NM_001167856)	promoter-TSS (NM_001167856)	102	NR_157806	112268105		NR_157805	ENSG00000256092	SBNO1-AS1	-	SBNO1 antisense RNA 1	ncRNA
187511	chr5	142359371	142360330	+	0	NA	intron (NR_120664, intron 3 of 3)	Tigger3a|DNA|TcMar-Tigger	34557	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
49795	chr12	31957021	31957330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2240	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
182442	chr5	62307001	62308850	+	0	NA	intron (NM_004520, intron 1 of 19)	intron (NM_004520, intron 1 of 19)	1719	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
43323	chr11	76378251	76378880	+	0	NA	intron (NM_004705, intron 1 of 4)	L1MB5|LINE|L1	2400	NR_130898	5612		NM_004705	ENSG00000137492	THAP12	DAP4|P52rIPK|PRKRIR|THAP0	THAP domain containing 12	protein-coding
178775	chr4	153437921	153438530	+	0	NA	Intergenic	AluSp|SINE|Alu	-28121	NM_015196	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
54576	chr12	92396721	92397150	+	0	NA	Intergenic	Intergenic	-24596	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
55549	chr12	105737871	105738430	+	0	NA	intron (NR_110110, intron 2 of 2)	Tigger19a|DNA|TcMar-Tigger	31376	NR_110110	101929110		NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility 18	ncRNA
51541	chr12	52359621	52360250	+	0	NA	TTS (NM_001300810)	TTS (NM_001300810)	4687	NM_001300810	3891		NM_002283	ENSG00000135443	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
1189	chr1	2238471	2239030	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	10431	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
187836	chr5	146894751	146895180	+	0	NA	intron (NM_001271900, intron 2 of 10)	L2c|LINE|L2	-16038	NR_073527	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
43475	chr11	78192371	78192530	+	0	NA	intron (NM_020798, intron 1 of 10)	intron (NM_020798, intron 1 of 10)	3531	NM_020798	57558		NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
227392	chr9	89521121	89521400	+	0	NA	Intergenic	AluY|SINE|Alu	-23147	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
154515	chr22	35921701	35921980	+	0	NA	intron (NM_001349999, intron 2 of 13)	intron (NM_001349999, intron 2 of 13)	39790	NM_001349996	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
114595	chr19	12947421	12947680	+	0	NA	intron (NR_072976, intron 1 of 7)	L2a|LINE|L2	1688	NM_005053	5886		NM_005053	ENSG00000179262	RAD23A	HHR23A|HR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding
50763	chr12	49025401	49025630	+	0	NA	intron (NM_003482, intron 49 of 54)	Tigger3a|DNA|TcMar-Tigger	-6739	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
128671	chr2	61467351	61468630	+	0	NA	intron (NM_014709, intron 1 of 79)	intron (NM_014709, intron 1 of 79)	3097	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
102672	chr17	76091601	76092400	+	0	NA	intron (NM_001145297, intron 6 of 19)	intron (NM_001145297, intron 6 of 19)	6076	NR_106928	102466753		NR_106928	ENSG00000275360	MIR6868	hsa-mir-6868	microRNA 6868	ncRNA
235501	chrX	47143301	47143530	+	0	NA	intron (NM_001135998, intron 1 of 2)	L2a|LINE|L2	1287	NM_001135998	54539		NM_019056	ENSG00000147123	NDUFB11	CI-ESSS|ESSS|MC1DN30|NP17.3|Np15|P17.3	NADH:ubiquinone oxidoreductase subunit B11	protein-coding
187497	chr5	142323401	142323880	+	0	NA	intron (NM_030964, intron 1 of 2)	intron (NM_030964, intron 1 of 2)	607	NM_001293289	81848		NM_030964	ENSG00000187678	SPRY4	HH17	sprouty RTK signaling antagonist 4	protein-coding
95206	chr17	35240671	35240930	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2272	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
222223	chr8	133075971	133076880	+	0	NA	intron (NM_001045556, intron 1 of 8)	intron (NM_001045556, intron 1 of 8)	-16071	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
98223	chr17	46148521	46149180	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSx1|SINE|Alu	43932	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
27449	chr10	31925571	31925730	+	0	NA	intron (NM_018287, intron 1 of 19)	MER5A|DNA|hAT-Charlie	3181	NM_001270698	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
90840	chr17	2341571	2342150	+	0	NA	intron (NM_001346700, intron 1 of 22)	L1ME3A|LINE|L1	4359	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
222347	chr8	133548971	133549130	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	22837	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
191849	chr6	15250771	15250930	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	1995	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
134068	chr2	131504271	131504830	+	0	NA	intron (NR_026922, intron 8 of 17)	L1MC4|LINE|L1	11737	NR_026922	150776		NR_026922	ENSG00000293311	SMPD4BP	-	sphingomyelin phosphodiesterase 4B, pseudogene	pseudo
89587	chr16	89276071	89276580	+	0	NA	intron (NM_013275, intron 9 of 12)	intron (NM_013275, intron 9 of 12)	-19803	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
71101	chr14	104884371	104884730	+	0	NA	intron (NM_001112726, intron 9 of 18)	CpG	19236	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
75109	chr15	64492101	64492500	+	0	NA	intron (NM_015042, intron 1 of 9)	intron (NM_015042, intron 1 of 9)	31722	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
35976	chr11	2856351	2856650	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	5069	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
205664	chr7	22885771	22886200	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	29372	NR_003075	692210		NR_003075	ENSG00000221740	SNORD93	HBII-336	small nucleolar RNA, C/D box 93	snoRNA
181286	chr5	39463071	39463230	+	0	NA	Intergenic	X7B_LINE|LINE|CR1	-37917	NM_001244871	1601		NM_001343	ENSG00000153071	DAB2	DOC-2|DOC2	DAB adaptor protein 2	protein-coding
34949	chr11	453501	454480	+	0	NA	intron (NR_138046, intron 1 of 12)	intron (NR_138046, intron 1 of 12)	3711	NM_001329545	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
118974	chr19	38871651	38871750	+	0	NA	exon (NM_198445, exon 6 of 12).2	exon (NM_198445, exon 6 of 12).2	6575	NM_198445	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
179444	chr4	184411201	184411900	+	0	NA	intron (NM_002199, intron 5 of 8)	intron (NM_002199, intron 5 of 8)	-29244	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
224527	chr9	19181151	19182280	+	0	NA	Intergenic	MER41B|LTR|ERV1	-48978	NM_001330640	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
210394	chr7	99918821	99920030	+	0	NA	5' UTR (NM_033091, exon 1 of 6)	5' UTR (NM_033091, exon 1 of 6)	105	NM_033091	89122		NM_033017	ENSG00000146833	TRIM4	RNF87	tripartite motif containing 4	protein-coding
56135	chr12	111068121	111068580	+	0	NA	intron (NM_015267, intron 1 of 21)	intron (NM_015267, intron 1 of 21)	-31654	NM_001370598	23316		NM_015267	ENSG00000111249	CUX2	CDP2|CUTL2|DEE67|EIEE67	cut like homeobox 2	protein-coding
69009	chr14	91499621	91500580	+	0	NA	intron (NR_158976, intron 2 of 16)	intron (NR_158976, intron 2 of 16)	10210	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
188216	chr5	150734901	150735300	+	0	NA	intron (NM_001135643, intron 4 of 13)	L1PB1|LINE|L1	23420	NM_001135644	51164		NM_016221	ENSG00000132912	DCTN4	DYN4|P62	dynactin subunit 4	protein-coding
201921	chr6	151392951	151393400	+	0	NA	Intergenic	Intergenic	-1616	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
71808	chr15	21761671	21761830	+	0	NA	Intergenic	MIRb|SINE|MIR	-25751	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
164170	chr3	56788801	56789250	+	0	NA	intron (NM_001289698, intron 2 of 10)	(TGC)n|Simple_repeat|Simple_repeat	12924	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
189699	chr5	176451201	176451780	+	0	NA	intron (NM_014613, intron 1 of 10)	AluJr|SINE|Alu	3105	NM_014613	23197		NM_014613	ENSG00000113194	FAF2	ETEA|UBXD8|UBXN3B	Fas associated factor family member 2	protein-coding
14535	chr1	144860301	144860700	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	142329	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
216601	chr8	22050071	22050230	+	0	NA	intron (NM_001323382, intron 1 of 15)	intron (NM_001323382, intron 1 of 15)	1219	NM_001323382	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
140331	chr2	232538971	232539330	+	0	NA	promoter-TSS (NM_005199)	promoter-TSS (NM_005199)	-542	NM_005199	1146		NM_005199	ENSG00000196811	CHRNG	ACHRG	cholinergic receptor nicotinic gamma subunit	protein-coding
159481	chr3	14149971	14150230	+	0	NA	intron (NR_148951, intron 9 of 13)	intron (NR_148951, intron 9 of 13)	25048	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
226654	chr9	74887171	74887900	+	0	NA	promoter-TSS (NM_001177311)	promoter-TSS (NM_001177311)	185	NM_001177310	140803		NM_017662	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	transient receptor potential cation channel subfamily M member 6	protein-coding
162147	chr3	46963501	46963700	+	0	NA	intron (NM_144716, intron 2 of 7)	SVA_D|Retroposon|SVA	12901	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
174276	chr4	38183051	38183350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	63246	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
83121	chr16	22524701	22525100	+	0	NA	intron (NM_001135865, intron 2 of 6)	intron (NM_001135865, intron 2 of 6)	11377	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
69663	chr14	98008601	98009000	+	0	NA	Intergenic	Intergenic	-30676	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
46488	chr11	128328921	128330000	+	0	NA	Intergenic	Intergenic	120694	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
140004	chr2	230972351	230972650	+	0	NA	Intergenic	AluJb|SINE|Alu	23532	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
134096	chr2	131801471	131803280	+	0	NA	promoter-TSS (NR_161366).2	promoter-TSS (NR_161366).2	-714	NR_161366	408029		NR_161366	ENSG00000290618	CDRT15P3	C2orf27B	CDRT15 pseudogene 3	ncRNA
224370	chr9	7844271	7844530	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-44622	NM_001318059	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
83828	chr16	28851701	28852050	+	0	NA	intron (NM_001308293, intron 1 of 10)	AluSx3|SINE|Alu	5275	NM_001308293	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
24397	chr1	243102901	243103780	+	0	NA	Intergenic	Intergenic	-1596	NR_029401	731275		NR_029401	ENSG00000291217	LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
193437	chr6	30482011	30482880	+	0	NA	Intergenic	Intergenic	-7064	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
226904	chr9	79471701	79472230	+	0	NA	Intergenic	Intergenic	-99808	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
224845	chr9	27575401	27575600	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-1634	NM_001256054	203228		NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1	C9orf72-SMCR8 complex subunit	protein-coding
216951	chr8	22990421	22990830	+	0	NA	intron (NM_001160036, intron 1 of 11)	intron (NM_001160036, intron 1 of 11)	3374	NM_001160036	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
85384	chr16	50284321	50285480	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	-7716	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
133558	chr2	121084971	121085130	+	0	NA	Intergenic	Intergenic	200152	NM_014553	29842		NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
128358	chr2	54967821	54968080	+	0	NA	intron (NM_001039753, intron 38 of 40)	MER1B|DNA|hAT-Charlie	42322	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
147567	chr20	60271571	60271930	+	0	NA	intron (NR_046099, intron 3 of 4)	intron (NR_046099, intron 3 of 4)	-36724	NR_030376	693231		NR_030376	ENSG00000207802	MIR646	MIRN646|hsa-mir-646	microRNA 646	ncRNA
139209	chr2	219280871	219281030	+	0	NA	intron (NM_001039550, intron 3 of 9)	MIRb|SINE|MIR	1584	NM_006736	3300		NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HMNR5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
127993	chr2	46943701	46944700	+	0	NA	intron (NM_020458, intron 1 of 19)	intron (NM_020458, intron 1 of 19)	-2345	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
47078	chr12	575871	576730	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	10186	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
209207	chr7	75432201	75432400	+	0	NA	intron (NM_001099415, intron 7 of 14)	L1ME3A|LINE|L1	21978	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
118038	chr19	34231521	34232150	+	0	NA	Intergenic	AluSx|SINE|Alu	-22719	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
175112	chr4	54658501	54659000	+	0	NA	intron (NM_001385292, intron 1 of 20)	CpG	793	NM_001093772	3815		NM_000222	ENSG00000157404	KIT	C-Kit|CD117|MASTC|PBT|SCFR	KIT proto-oncogene, receptor tyrosine kinase	protein-coding
38956	chr11	47533571	47534050	+	0	NA	intron (NM_001376409, intron 1 of 15)	AluSx1|SINE|Alu	-9106	NM_001376369	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
150330	chr21	42069101	42069600	+	0	NA	intron (NM_001199527, intron 1 of 21)	intron (NM_001199527, intron 1 of 21)	-1967	NM_173568	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
149480	chr21	31942951	31943050	+	0	NA	intron (NM_014586, intron 3 of 10)	intron (NM_014586, intron 3 of 10)	69980	NM_014586	30811		NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
3731	chr1	16629901	16630550	+	0	NA	intron (NR_026752, intron 1 of 6)	intron (NR_026752, intron 1 of 6)	681	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
167049	chr3	126748951	126749250	+	0	NA	intron (NM_032343, intron 4 of 7)	L2b|LINE|L2	44860	NM_032343	84303		NM_032343	ENSG00000159685	CHCHD6	CHCM1|MICOS25|Mic25|PPP1R23	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding
227143	chr9	86285371	86285750	+	0	NA	Intergenic	MIRc|SINE|MIR	-3022	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
19158	chr1	171592501	171592900	+	0	NA	3' UTR (NM_015172, exon 34 of 34)	3' UTR (NM_015172, exon 34 of 34)	-27063	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
109331	chr19	597521	598600	+	0	NA	intron (NM_001194, intron 1 of 7)	intron (NM_001194, intron 1 of 7)	8179	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
117791	chr19	29839251	29839550	+	0	NA	Intergenic	Intergenic	27409	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
157711	chr22	46421221	46421630	+	0	NA	intron (NM_001378328, intron 5 of 34)	intron (NM_001378328, intron 5 of 34)	85711	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
109004	chr18	79704951	79705050	+	0	NA	intron (NM_001318511, intron 5 of 11)	intron (NM_001318511, intron 5 of 11)	23570	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
229550	chr9	122912601	122914480	+	0	NA	promoter-TSS (NM_006626)	promoter-TSS (NM_006626)	-217	NM_006626	10773		NM_006626	ENSG00000186130	ZBTB6	ZID|ZNF482	zinc finger and BTB domain containing 6	protein-coding
184715	chr5	109403471	109403900	+	0	NA	intron (NM_014819, intron 1 of 9)	L1ME1|LINE|L1	6289	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
226753	chr9	76392421	76392780	+	0	NA	intron (NM_018339, intron 1 of 3)	intron (NM_018339, intron 1 of 3)	1826	NM_018339	55312		NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
193896	chr6	31615401	31616580	+	0	NA	promoter-TSS (NM_032955).2	promoter-TSS (NM_032955).2	-1	NM_032955	199		NM_001623	ENSG00000204472	AIF1	AIF-1|IBA1|IRT-1|IRT1	allograft inflammatory factor 1	protein-coding
78611	chr15	93861321	93861580	+	0	NA	intron (NR_120321, intron 1 of 3)	intron (NR_120321, intron 1 of 3)	4890	NR_120321	101927153		NR_120321	ENSG00000258476	LINC02207	-	long intergenic non-protein coding RNA 2207	ncRNA
29270	chr10	69178121	69178380	+	0	NA	Intergenic	AluJb|SINE|Alu	-1984	NM_003171	6832		NM_003171	ENSG00000156502	SUPV3L1	SUV3	Suv3 like RNA helicase	protein-coding
16176	chr1	153789451	153790380	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-4032	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
167192	chr3	128226771	128227230	+	0	NA	intron (NM_021937, intron 1 of 6)	intron (NM_021937, intron 1 of 6)	-73086	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
19851	chr1	182962551	182962830	+	0	NA	Intergenic	Intergenic	-9524	NM_030933	81626		NM_030933	ENSG00000157060	SHCBP1L	C1orf14|GE36	SHC binding and spindle associated 1 like	protein-coding
4942	chr1	23963351	23964450	+	0	NA	TTS (NM_054016)	TTS (NM_054016)	4072	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
68296	chr14	77182271	77182430	+	0	NA	intron (NM_020431, intron 1 of 23)	intron (NM_020431, intron 1 of 23)	552	NM_020431	57156		NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|SPG87|hsCSC1	transmembrane protein 63C	protein-coding
119587	chr19	40713371	40713730	+	0	NA	intron (NM_001142555, intron 4 of 13)	AluSg|SINE|Alu	1569	NM_001142555	79934		NM_024876	ENSG00000123815	COQ8B	ADCK4|NPHS9	coenzyme Q8B	protein-coding
9507	chr1	51298471	51298630	+	0	NA	promoter-TSS (NM_001297667)	promoter-TSS (NM_001297667)	-589	NM_001297667	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
147710	chr20	62362601	62362800	+	0	NA	intron (NM_005560, intron 1 of 79)	intron (NM_005560, intron 1 of 79)	4612	NM_005560	3911		NM_005560	ENSG00000130702	LAMA5	BBDS2|NPHS26	laminin subunit alpha 5	protein-coding
100480	chr17	61461001	61461400	+	0	NA	intron (NM_001321120, intron 3 of 8)	intron (NM_001321120, intron 3 of 8)	4712	NM_018488	9496		NM_018488	ENSG00000121075	TBX4	ICPPS|PAPPAS|SPS	T-box transcription factor 4	protein-coding
18462	chr1	161562271	161562630	+	0	NA	Intergenic	Intergenic	-11713	NM_001329120	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
117460	chr19	19691121	19691780	+	0	NA	Intergenic	AluSz|SINE|Alu	22611	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
150284	chr21	41899371	41900250	+	0	NA	intron (NM_015500, intron 12 of 13)	intron (NM_015500, intron 12 of 13)	-20466	NM_001282934	63977		NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
97804	chr17	44778151	44778250	+	0	NA	exon (NM_002390, exon 25 of 27)	exon (NM_002390, exon 25 of 27)	19212	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
45647	chr11	119001671	119002030	+	0	NA	intron (NR_104051, intron 4 of 10)	FLAM_A|SINE|Alu	1743	NR_003040	649946		NR_003040		RPL23AP64	RPL23A_25_1182	ribosomal protein L23a pseudogene 64	pseudo
216865	chr8	22622621	22623530	+	0	NA	intron (NR_156436, intron 8 of 9)	intron (NR_156436, intron 8 of 9)	18033	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
152836	chr22	21962071	21962430	+	0	NA	intron (NM_001349845, intron 14 of 18)	intron (NM_001349845, intron 14 of 18)	-9402	NM_014634	9647		NM_014634	ENSG00000100034	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent 1F	protein-coding
7085	chr1	32049871	32050030	+	0	NA	intron (NR_073499, intron 10 of 10)	AluSc8|SINE|Alu	-22081	NM_001319677	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
36684	chr11	8682051	8683500	+	0	NA	promoter-TSS (NM_000990)	promoter-TSS (NM_000990)	-17	NM_000990	6157		NM_000990	ENSG00000166441	RPL27A	L27A|uL15	ribosomal protein L27a	protein-coding
29750	chr10	72208721	72208980	+	0	NA	intron (NM_001198799, intron 3 of 12)	intron (NM_001198799, intron 3 of 12)	7106	NM_001369106	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
27813	chr10	37975741	37977080	+	0	NA	promoter-TSS (NR_138069)	promoter-TSS (NR_138069)	237	NR_138067	219749		NM_145011	ENSG00000175395	ZNF25	KOX19|Zfp9	zinc finger protein 25	protein-coding
74292	chr15	57777121	57777380	+	0	NA	Intergenic	Intergenic	70536	NM_015532	81488		NM_015532	ENSG00000255529	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	RNA polymerase II subunit M	protein-coding
96057	chr17	39481371	39482300	+	0	NA	intron (NM_016507, intron 2 of 13)	AluSx3|SINE|Alu	20349	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
180598	chr5	15912101	15912300	+	0	NA	intron (NM_012304, intron 2 of 3)	L1HS|LINE|L1	-22982	NR_030616	100126347		NR_030616	ENSG00000216077	MIR887	MIRN887|hsa-mir-887	microRNA 887	ncRNA
136706	chr2	181145821	181147050	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	22598	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
95188	chr17	35210771	35211150	+	0	NA	Intergenic	L1ME3A|LINE|L1	-16567	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
202090	chr6	154359151	154359450	+	0	NA	Intergenic	Intergenic	-2534	NM_015553	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
152511	chr22	20954721	20954980	+	0	NA	Intergenic	AluSx|SINE|Alu	-2242	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
112591	chr19	6693851	6694350	+	0	NA	intron (NM_000064, intron 24 of 40)	intron (NM_000064, intron 24 of 40)	-23512	NM_003807	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
157442	chr22	45238351	45238750	+	0	NA	intron (NM_001009880, intron 1 of 9)	L2c|LINE|L2	2344	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
109837	chr19	1197251	1197630	+	0	NA	Intergenic	Intergenic	-8338	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
134404	chr2	138689621	138690080	+	0	NA	intron (NM_007226, intron 1 of 1)	intron (NM_007226, intron 1 of 1)	90540	NM_007226	11249		NM_007226	ENSG00000144227	NXPH2	NPH2	neurexophilin 2	protein-coding
75936	chr15	70248201	70248400	+	0	NA	Intergenic	Intergenic	-150383	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
14114	chr1	120932551	120933150	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-9750	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
142510	chr20	4813601	4815700	+	0	NA	intron (NM_014737, intron 2 of 11)	intron (NM_014737, intron 2 of 11)	473	NM_170774	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
88528	chr16	85393521	85394180	+	0	NA	Intergenic	Intergenic	-87525	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
237940	chrX	132480051	132481500	+	0	NA	intron (NM_001170704, intron 1 of 8)	Eulor5A|DNA?|DNA?	9260	NM_001170704	55796		NM_018388	ENSG00000076770	MBNL3	CHCR|MBLX|MBLX39|MBXL	muscleblind like splicing regulator 3	protein-coding
140496	chr2	233196721	233196980	+	0	NA	intron (NM_001017915, intron 24 of 26).2	intron (NM_001017915, intron 24 of 26).2	-54721	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
13205	chr1	112636721	112637630	+	0	NA	intron (NM_006135, intron 1 of 9)	MIRc|SINE|MIR	17343	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
150766	chr21	43799101	43799300	+	0	NA	intron (NM_003683, intron 8 of 12)	intron (NM_003683, intron 8 of 12)	9623	NM_003683	8568		NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
191876	chr6	15312471	15312830	+	0	NA	intron (NM_001267040, intron 1 of 17)	L1ME2|LINE|L1	63795	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
5303	chr1	25214921	25216030	+	0	NA	Intergenic	Intergenic	17027	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
59144	chr13	21460601	21461350	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-1605	NM_001286638	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
174027	chr4	26812201	26812630	+	0	NA	Intergenic	Intergenic	47829	NR_134675	105374546		NR_134673		STIM2-AS1	-	STIM2 antisense RNA 1	ncRNA
91889	chr17	7280271	7281100	+	0	NA	Intergenic	Intergenic	-1033	NM_001042	6517		NM_001042	ENSG00000181856	SLC2A4	GLUT4	solute carrier family 2 member 4	protein-coding
95881	chr17	38874921	38875400	+	0	NA	intron (NM_006148, intron 1 of 6)	G-rich|Low_complexity|Low_complexity	5102	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
28702	chr10	61284221	61284550	+	0	NA	Intergenic	Intergenic	-168254	NR_120643	101928781		NR_120643		TMEM26-AS1	-	TMEM26 antisense RNA 1	ncRNA
166557	chr3	115658291	115659800	+	0	NA	intron (NM_002045, intron 1 of 2)	intron (NM_002045, intron 1 of 2)	35535	NM_001130064	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
197453	chr6	75206871	75207230	+	0	NA	promoter-TSS (NM_004370)	promoter-TSS (NM_004370)	-997	NM_080645	1303		NM_004370	ENSG00000111799	COL12A1	BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2	collagen type XII alpha 1 chain	protein-coding
4718	chr1	23218251	23218350	+	0	NA	promoter-TSS (NM_000864)	promoter-TSS (NM_000864)	-798	NM_000864	3352		NM_000864	ENSG00000179546	HTR1D	5-HT1D|HT1DA|HTR1DA|HTRL|RDC4	5-hydroxytryptamine receptor 1D	protein-coding
60827	chr13	45395621	45397150	+	0	NA	intron (NM_001286806, intron 8 of 8)	intron (NM_001286806, intron 8 of 8)	-21777	NR_047031	100874259		NR_047031	ENSG00000251015	SLC25A30-AS1	-	SLC25A30 antisense RNA 1	ncRNA
78040	chr15	90033301	90033500	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	26645	NR_036135	100422841		NR_036135	ENSG00000265871	MIR3174	-	microRNA 3174	ncRNA
155899	chr22	39536421	39536680	+	0	NA	Intergenic	Intergenic	-3802	NM_194326	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
74561	chr15	60529921	60531130	+	0	NA	TTS (NR_120340)	TTS (NR_120340)	51347	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
24199	chr1	236058401	236058600	+	0	NA	intron (NM_002508, intron 1 of 19)	intron (NM_002508, intron 1 of 19)	6590	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
115819	chr19	16469201	16469400	+	0	NA	intron (NM_021235, intron 1 of 22)	intron (NM_021235, intron 1 of 22)	2670	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
237696	chrX	124369501	124370030	+	0	NA	intron (NM_002351, intron 2 of 3)	intron (NM_002351, intron 2 of 3)	23202	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
173941	chr4	25843771	25844000	+	0	NA	intron (NM_001297592, intron 2 of 23)	intron (NM_001297592, intron 2 of 23)	19103	NM_015187	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
140837	chr2	236967001	236967300	+	0	NA	Intergenic	MER41A|LTR|ERV1	89017	NR_135202	93463		NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA
19026	chr1	169676051	169676730	+	0	NA	Intergenic	Intergenic	32467	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
137190	chr2	191143301	191144030	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	7329	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
79504	chr16	791771	792650	+	0	NA	intron (NM_022092, intron 9 of 21)	CpG	3590	NM_022092	63922		NM_022092	ENSG00000127586	CHTF18	C16orf41|C321D2.2|C321D2.3|C321D2.4|CHL12|Ctf18|RUVBL	chromosome transmission fidelity factor 18	protein-coding
165248	chr3	73040321	73040600	+	0	NA	intron (NM_001318025, intron 2 of 7)	intron (NM_001318025, intron 2 of 7)	-21199	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
144339	chr20	34992601	34993630	+	0	NA	exon (NM_020884, exon 25 of 45)	exon (NM_020884, exon 25 of 45)	-2643	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
235386	chrX	45040571	45040730	+	0	NA	intron (NM_001291416, intron 8 of 28)	SVA_E|Retroposon|SVA	160226	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
43093	chr11	74820751	74821050	+	0	NA	intron (NM_001098638, intron 4 of 5)	MIRb|SINE|MIR	72051	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
20715	chr1	200849671	200849830	+	0	NA	exon (NM_001297707, exon 12 of 18)	exon (NM_001297707, exon 12 of 18)	-23231	NM_005298	2848		NM_005298	ENSG00000170128	GPR25	-	G protein-coupled receptor 25	protein-coding
28348	chr10	46786171	46787680	+	0	NA	promoter-TSS (NR_111968)	promoter-TSS (NR_111968)	-155	NR_111968	414212		NR_048574	ENSG00000290875	GLUD1P2	GLUD1P7|GLUDP2|GLUDP7	glutamate dehydrogenase 1 pseudogene 2	pseudo
87301	chr16	70117421	70117880	+	0	NA	intron (NM_017990, intron 2 of 18)	L2c|LINE|L2	3318	NM_017990	55066		NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
151564	chr21	46561021	46561850	+	0	NA	intron (NM_001353942, intron 33 of 37)	intron (NM_001353942, intron 33 of 37)	43647	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
31080	chr10	89201301	89201700	+	0	NA	Intergenic	L1ME1|LINE|L1	5817	NM_003956	9023		NM_003956	ENSG00000138135	CH25H	C25H	cholesterol 25-hydroxylase	protein-coding
109496	chr19	824671	825380	+	0	NA	Intergenic	Intergenic	-2812	NM_001700	566		NM_001700	ENSG00000172232	AZU1	AZAMP|AZU|CAP37|HBP|HUMAZUR|NAZC|hHBP	azurocidin 1	protein-coding
98706	chr17	47944571	47944730	+	0	NA	exon (NM_018129, exon 3 of 7)	exon (NM_018129, exon 3 of 7)	3079	NM_018129	55163		NM_018129	ENSG00000108439	PNPO	HEL-S-302|PDXPO	pyridoxamine 5'-phosphate oxidase	protein-coding
112417	chr19	6218171	6219380	+	0	NA	intron (NM_005934, intron 6 of 11)	intron (NM_005934, intron 6 of 11)	61200	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
152497	chr22	20926921	20927400	+	0	NA	intron (NR_156180, intron 1 of 3)	intron (NR_156180, intron 1 of 3)	9753	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
20674	chr1	200409251	200410750	+	0	NA	promoter-TSS (NM_001281294)	promoter-TSS (NM_001281294)	36	NM_001281294	23528		NM_012482	ENSG00000162702	ZNF281	GZP1|ZBP-99|ZBP99|ZNP-99	zinc finger protein 281	protein-coding
142767	chr20	10608321	10608700	+	0	NA	intron (NM_001009608, intron 6 of 7)	AluY|SINE|Alu	41185	NR_106930	102465525		NR_106930	ENSG00000273745	MIR6870	hsa-mir-6870	microRNA 6870	ncRNA
189970	chr5	177441301	177441730	+	0	NA	TTS (NM_001004105)	TTS (NM_001004105)	-4480	NM_001375593	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
95723	chr17	38571171	38571330	+	0	NA	intron (NM_025248, intron 2 of 18)	intron (NM_025248, intron 2 of 18)	34702	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
87972	chr16	80547021	80547280	+	0	NA	intron (NM_001305017, intron 2 of 3)	L1ME4b|LINE|L1	6157	NR_130943	83657		NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein light chain roadblock-type 2	protein-coding
208842	chr7	73698401	73699280	+	0	NA	TTS (NR_037776)	TTS (NR_037776)	-12477	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
222841	chr8	142612521	142612950	+	0	NA	3' UTR (NM_015193, exon 1 of 3)	3' UTR (NM_015193, exon 1 of 3)	1744	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
179050	chr4	165294521	165295250	+	0	NA	intron (NM_001161522, intron 5 of 13)	intron (NM_001161522, intron 5 of 13)	-14862	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
181764	chr5	50726771	50727600	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	59771	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
156973	chr22	42442771	42442930	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-4864	NM_001371362	150372		NM_145912	ENSG00000235568	NFAM1	CNAIP	NFAT activating protein with ITAM motif 1	protein-coding
12163	chr1	100348971	100349130	+	0	NA	intron (NM_001319211, intron 1 of 14)	AluSz|SINE|Alu	-3417	NM_033313	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
68485	chr14	88008371	88008550	+	0	NA	intron (NM_003608, intron 1 of 1)	L1ME3A|LINE|L1	3325	NM_003608	8477		NM_003608	ENSG00000140030	GPR65	TDAG8|hTDAG8	G protein-coupled receptor 65	protein-coding
93961	chr17	21463151	21463950	+	0	NA	Intergenic	Intergenic	87193	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
237668	chrX	124335921	124336180	+	0	NA	3' UTR (NM_001355534, exon 1 of 1)	3' UTR (NM_001355534, exon 1 of 1)	3390	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
109468	chr19	802401	802730	+	0	NA	intron (NM_031991, intron 2 of 13)	intron (NM_031991, intron 2 of 13)	-2375	NR_039900	100616459		NR_039900	ENSG00000284361	MIR4745	mir-4745	microRNA 4745	ncRNA
655	chr1	1357551	1357650	+	0	NA	intron (NM_001282583, intron 1 of 9)	AluSx1|SINE|Alu	947	NM_001282585	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
81643	chr16	10939501	10939700	+	0	NA	intron (NM_014015, intron 1 of 1)	L2b|LINE|L2	2868	NM_014015	28955		NM_014015	ENSG00000182108	DEXI	MYLE	Dexi homolog	protein-coding
164624	chr3	66391871	66392030	+	0	NA	intron (NM_001377344, intron 11 of 17)	L1MB8|LINE|L1	13817	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
75307	chr15	65286051	65287700	+	0	NA	promoter-TSS (NM_001316944)	promoter-TSS (NM_001316944)	8	NM_001316944	54956		NM_017851	ENSG00000138617	PARP16	ARTD15|C15orf30|pART15	poly(ADP-ribose) polymerase family member 16	protein-coding
20927	chr1	202196201	202196400	+	0	NA	intron (NM_001017403, intron 1 of 17)	intron (NM_001017403, intron 1 of 17)	2310	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
32507	chr10	102752971	102753350	+	0	NA	intron (NM_001083913, intron 1 of 3)	intron (NM_001083913, intron 1 of 3)	9212	NM_001083913	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
33718	chr10	121925751	121926200	+	0	NA	intron (NR_110006, intron 1 of 9)	AluSq|SINE|Alu	2056	NM_007041	11101		NM_007041	ENSG00000107669	ATE1	-	arginyltransferase 1	protein-coding
219236	chr8	66922921	66923180	+	0	NA	promoter-TSS (NR_002598)	promoter-TSS (NR_002598)	-501	NR_002598	641648		NR_002598	ENSG00000254341	SNORD87	HBII-276|U87	small nucleolar RNA, C/D box 87	snoRNA
144033	chr20	33536201	33536400	+	0	NA	intron (NM_001032999, intron 1 of 10)	SVA_D|Retroposon|SVA	-26065	NM_005093	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
153984	chr22	30384651	30384750	+	0	NA	intron (NM_001017981, intron 4 of 8)	intron (NM_001017981, intron 4 of 8)	2711	NM_001017981	200312		NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
167076	chr3	126995301	126995500	+	0	NA	intron (NM_032242, intron 2 of 30)	intron (NM_032242, intron 2 of 30)	6806	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
218926	chr8	60868071	60869030	+	0	NA	TTS (NM_017780)	TTS (NM_017780)	42248	NR_168431	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
145435	chr20	43469471	43469630	+	0	NA	Intergenic	L1MC5|LINE|L1	11654	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
180566	chr5	14704101	14704500	+	0	NA	TTS (NM_054027)	TTS (NM_054027)	-8394	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
134172	chr2	134257751	134257850	+	0	NA	intron (NM_001371457, intron 2 of 16)	intron (NM_001371457, intron 2 of 16)	3728	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
56514	chr12	116533021	116535000	+	0	NA	non-coding (NR_027345, exon 2 of 2)	non-coding (NR_027345, exon 2 of 2)	575	NR_027346	100287569		NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
47103	chr12	662171	663850	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	435	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
170823	chr3	189715201	189715600	+	0	NA	intron (NM_001329144, intron 1 of 11)	intron (NM_001329144, intron 1 of 11)	-74259	NM_001329146	8626		NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
83730	chr16	28592321	28592580	+	0	NA	TTS (NM_138414)	TTS (NM_138414)	4030	NM_177528	6799		NM_001054	ENSG00000197165	SULT1A2	HAST4|P-PST|P-PST 2|ST1A2|STP2|TSPST2	sulfotransferase family 1A member 2	protein-coding
8047	chr1	38570021	38570280	+	0	NA	Intergenic	Intergenic	94954	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
181663	chr5	50428051	50429130	+	0	NA	intron (NM_198449, intron 1 of 8)	intron (NM_198449, intron 1 of 8)	12698	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
42749	chr11	72717271	72717430	+	0	NA	intron (NM_001040118, intron 3 of 34)	intron (NM_001040118, intron 3 of 34)	4990	NR_161388	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
62658	chr13	102401171	102401700	+	0	NA	intron (NM_001321942, intron 1 of 5)	intron (NM_001321942, intron 1 of 5)	597	NM_001321937	2259		NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|NYS4|SCA27|SCA27A|SCA27B	fibroblast growth factor 14	protein-coding
65796	chr14	54691571	54691800	+	0	NA	intron (NM_015589, intron 2 of 12)	intron (NM_015589, intron 2 of 12)	-63148	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
151105	chr21	44862951	44863580	+	0	NA	intron (NM_004339, intron 2 of 5)	intron (NM_004339, intron 2 of 5)	10425	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
140468	chr2	233174751	233175150	+	0	NA	intron (NM_001017915, intron 17 of 26).2	AluSx1|SINE|Alu	-76621	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
110718	chr19	2312401	2312780	+	0	NA	Intergenic	Intergenic	-4436	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
67913	chr14	74615771	74615930	+	0	NA	Intergenic	Intergenic	-3613	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
150798	chr21	43915251	43915730	+	0	NA	intron (NM_020132, intron 2 of 9)	AluSz|SINE|Alu	-1298	NM_001369880	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
24027	chr1	235273951	235274250	+	0	NA	intron (NM_016374, intron 2 of 23)	AluSx|SINE|Alu	-53116	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
164723	chr3	68127501	68128100	+	0	NA	intron (NM_213609, intron 2 of 4)	(TGG)n|Simple_repeat|Simple_repeat	123553	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
174249	chr4	37976751	37978700	+	0	NA	intron (NM_015173, intron 2 of 19)	CpG	17327	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
182711	chr5	68241501	68242000	+	0	NA	intron (NM_181523, intron 2 of 15)	MIRb|SINE|MIR	25994	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
135216	chr2	159178071	159178230	+	0	NA	intron (NM_001350064, intron 13 of 26)	intron (NM_001350064, intron 13 of 26)	-8685	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
388	chr1	1048271	1048630	+	0	NA	intron (NM_198576, intron 23 of 35)	intron (NM_198576, intron 23 of 35)	-11284	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
2064	chr1	7920701	7920900	+	0	NA	3' UTR (NM_001561, exon 8 of 8)	3' UTR (NM_001561, exon 8 of 8)	20039	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
41050	chr11	65473401	65473800	+	0	NA	Intergenic	AluJr4|SINE|Alu	18314	NR_160547	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
126813	chr2	30461371	30461730	+	0	NA	intron (NM_182551, intron 2 of 6)	FLAM_A|SINE|Alu	14304	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
87168	chr16	69328271	69328630	+	0	NA	3' UTR (NM_001379264, exon 6 of 6)	3' UTR (NM_001379264, exon 6 of 6)	2138	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
54702	chr12	93435021	93435350	+	0	NA	intron (NM_003348, intron 1 of 3)	intron (NM_003348, intron 1 of 3)	6762	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
192485	chr6	24953451	24953780	+	0	NA	intron (NM_001286446, intron 1 of 13)	MER39|LTR|ERV1	-17655	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
188348	chr5	151612601	151613600	+	0	NA	Intergenic	Intergenic	-21769	NM_001447	2196		NM_001447	ENSG00000086570	FAT2	CDHF8|CDHR9|HFAT2|MEGF1|SCA45	FAT atypical cadherin 2	protein-coding
210677	chr7	100545201	100546170	+	0	NA	intron (NM_006076, intron 1 of 11)	intron (NM_006076, intron 1 of 11)	6482	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
87400	chr16	70526801	70527000	+	0	NA	intron (NM_012426, intron 2 of 25)	intron (NM_012426, intron 2 of 25)	-2599	NR_037420	100113402		NR_037420		SNORD111B	MIR3647	small nucleolar RNA, C/D box 111B	snoRNA
207023	chr7	38413751	38414050	+	0	NA	intron (NM_139316, intron 16 of 19)	intron (NM_139316, intron 16 of 19)	72323	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
3715	chr1	16612721	16614330	+	0	NA	promoter-TSS (NM_017940)	promoter-TSS (NM_017940)	39	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
81545	chr16	9110251	9110350	+	0	NA	intron (NM_014117, intron 3 of 3)	intron (NM_014117, intron 3 of 3)	18656	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
31637	chr10	97390851	97391330	+	0	NA	intron (NM_015179, intron 4 of 33)	intron (NM_015179, intron 4 of 33)	10250	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
72948	chr15	40449671	40449830	+	0	NA	intron (NR_125372, intron 1 of 4)	AluJr4|SINE|Alu	8797	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
142048	chr20	1764401	1764830	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	15131	NR_037142	100289473		NR_037142	ENSG00000293374	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
192618	chr6	26086001	26086690	+	0	NA	TTS (NR_144383)	TTS (NR_144383)	-1084	NM_139010	3077		NM_000410	ENSG00000010704	HFE	HFE1|HH|HLA-H|MVCD7|TFQTL2	homeostatic iron regulator	protein-coding
137570	chr2	197256801	197257300	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	45469	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
36810	chr11	9663521	9665130	+	0	NA	intron (NM_001297714, intron 1 of 10)	CpG	248	NM_015055	23075		NM_015055	ENSG00000133789	SWAP70	HSPC321|SWAP-70	switching B cell complex subunit SWAP70	protein-coding
87861	chr16	77195701	77195900	+	0	NA	intron (NM_014940, intron 5 of 5)	intron (NM_014940, intron 5 of 5)	-3608	NM_001348924	100130958		NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
146455	chr20	49697151	49697450	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	16578	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
131158	chr2	91524401	91525050	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	135224	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
54348	chr12	89693421	89693680	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	15288	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
129867	chr2	73073671	73073830	+	0	NA	3' UTR (NM_015470, exon 5 of 5)	3' UTR (NM_015470, exon 5 of 5)	-2038	NM_001371740	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
169309	chr3	158727551	158728280	+	0	NA	intron (NM_206963, intron 1 of 5)	intron (NM_206963, intron 1 of 5)	4542	NM_206963	5918		NM_002888	ENSG00000118849	RARRES1	LXNL|PERG-1|TIG1	retinoic acid receptor responder 1	protein-coding
5917	chr1	26839851	26840150	+	0	NA	intron (NM_032283, intron 2 of 7)	intron (NM_032283, intron 2 of 7)	13312	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
179707	chr4	190179221	190179940	+	0	NA	intron (NR_137167, intron 2 of 5).2	BSR/Beta|Satellite|Satellite	5806	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
19318	chr1	173406901	173407380	+	0	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	54222	NR_125960	101928673		NR_125960	ENSG00000203739	PRDX6-AS1	-	PRDX6 antisense RNA 1	ncRNA
32120	chr10	101226251	101226350	+	0	NA	TTS (NM_006562)	TTS (NM_006562)	2660	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
133414	chr2	118855171	118856280	+	0	NA	Intergenic	CpG	-8077	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
226585	chr9	73081951	73082380	+	0	NA	Intergenic	Intergenic	-69700	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
206474	chr7	33039451	33039950	+	0	NA	intron (NM_001374336, intron 1 of 10)	intron (NM_001374336, intron 1 of 10)	1206	NM_001356996	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
162772	chr3	49082751	49083200	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluSp|SINE|Alu	10657	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
107344	chr18	45837271	45838530	+	0	NA	intron (NM_213602, intron 3 of 5)	CpG-12500	12225	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
56773	chr12	120167951	120168250	+	0	NA	intron (NM_006836, intron 16 of 57)	intron (NM_006836, intron 16 of 57)	-12601	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
73987	chr15	52018901	52020390	+	0	NA	promoter-TSS (NR_156732)	promoter-TSS (NR_156732)	426	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
86838	chr16	67917701	67918100	+	0	NA	intron (NM_006742, intron 2 of 2)	intron (NM_006742, intron 2 of 2)	13962	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
236862	chrX	79450121	79450600	+	0	NA	Intergenic	Intergenic	-82808	NM_001171581	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
46654	chr11	128701701	128702000	+	0	NA	intron (NM_001271010, intron 1 of 9)	Eulor9B|DNA|DNA	-5827	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
21325	chr1	204523151	204523450	+	0	NA	intron (NM_001204172, intron 1 of 2)	AluY|SINE|Alu	6894	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
96019	chr17	39237651	39237750	+	0	NA	promoter-TSS (NR_164152)	promoter-TSS (NR_164152)	-70	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
19582	chr1	179296001	179296200	+	0	NA	intron (NR_045530, intron 1 of 13)	AluSp|SINE|Alu	2303	NM_003101	6646		NM_003101	ENSG00000057252	SOAT1	ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT	sterol O-acyltransferase 1	protein-coding
180178	chr5	1472321	1472780	+	0	NA	intron (NM_024830, intron 11 of 13)	intron (NM_024830, intron 11 of 13)	-27110	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
132123	chr2	101692021	101692880	+	0	NA	Intergenic	Intergenic	-5253	NM_145686	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
204776	chr7	5610571	5610730	+	0	NA	Intergenic	Intergenic	17834	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
195928	chr6	41836101	41836300	+	0	NA	intron (NM_001286554, intron 3 of 7)	intron (NM_001286554, intron 3 of 7)	48506	NM_001382294	100188893		NM_001134493	ENSG00000214736	TOMM6	OBTP|TOM6	translocase of outer mitochondrial membrane 6	protein-coding
86131	chr16	57684071	57684430	+	0	NA	intron (NM_170776, intron 9 of 11)	intron (NM_170776, intron 9 of 11)	-10556	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
63976	chr14	22218801	22219080	+	0	NA	Intergenic	Intergenic	213813	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
21473	chr1	205626321	205626580	+	0	NA	intron (NM_021795, intron 1 of 2)	intron (NM_021795, intron 1 of 2)	5561	NM_001973	2005		NM_001973	ENSG00000158711	ELK4	SAP1	ETS transcription factor ELK4	protein-coding
72771	chr15	39786301	39786900	+	0	NA	TTS (NR_135665)	TTS (NR_135665)	3694	NR_135665	105370941		NR_135665	ENSG00000261136	LOC105370941	-	uncharacterized LOC105370941	ncRNA
203483	chr7	569871	570050	+	0	NA	intron (NM_001164759, intron 9 of 10)	intron (NM_001164759, intron 9 of 10)	8002	NR_132384	101927000		NR_132384	ENSG00000229380	PRKAR1B-AS2	-	PRKAR1B antisense RNA 2	ncRNA
112171	chr19	5656371	5656930	+	0	NA	intron (NM_001320571, intron 11 of 18)	AluSz|SINE|Alu	23588	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
101840	chr17	73835571	73835930	+	0	NA	Intergenic	Tigger19a|DNA|TcMar-Tigger	-7213	NR_027146	283982		NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
101375	chr17	67260421	67260680	+	0	NA	intron (NR_136398, intron 3 of 3)	intron (NR_136398, intron 3 of 3)	-15354	NM_001330447	9931		NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
58199	chr12	126761521	126761780	+	0	NA	intron (NR_033878, intron 1 of 4)	intron (NR_033878, intron 1 of 4)	10612	NR_033878	387895		NR_033878		LINC00944	DMDRMR	long intergenic non-protein coding RNA 944	ncRNA
5639	chr1	26233701	26235280	+	0	NA	intron (NM_001319944, intron 1 of 13)	CpG	290	NM_022778	64793		NM_022778	ENSG00000130695	CEP85	CCDC21	centrosomal protein 85	protein-coding
44931	chr11	116276421	116276850	+	0	NA	Intergenic	Intergenic	-362787	NR_135069	101929011		NR_135069	ENSG00000237937	LINC02702	LASER	long intergenic non-protein coding RNA 2702	ncRNA
233430	chr9	137611421	137612680	+	0	NA	intron (NM_001317968, intron 1 of 6)	intron (NM_001317968, intron 1 of 6)	6364	NM_152285	92714		NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
169003	chr3	152432701	152433150	+	0	NA	intron (NM_207296, intron 4 of 8)	intron (NM_207296, intron 4 of 8)	-91935	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
53125	chr12	57834451	57834850	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	-9958	NR_029847	407016		NR_029847	ENSG00000207789	MIR26A2	MIRN26A2|mir-26a-2	microRNA 26a-2	ncRNA
186629	chr5	138546171	138546330	+	0	NA	Intergenic	Intergenic	-3014	NM_001364160	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
94587	chr17	29709201	29709400	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	52132	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
229109	chr9	114392751	114393600	+	0	NA	intron (NM_030767, intron 1 of 21)	MIRb|SINE|MIR	1230	NM_001317952	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
79436	chr16	706721	707100	+	0	NA	Intergenic	Intergenic	-1109	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
108451	chr18	70204471	70204630	+	0	NA	intron (NM_173630, intron 2 of 48)	intron (NM_173630, intron 2 of 48)	1137	NM_001318520	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
122452	chr19	49500201	49502030	+	0	NA	promoter-TSS (NR_029703)	promoter-TSS (NR_029703)	-247	NR_029703	406942		NR_029703	ENSG00000207782	MIR150	MIRN150|miRNA150|mir-150	microRNA 150	ncRNA
23876	chr1	234848951	234849250	+	0	NA	Intergenic	Intergenic	-89044	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
134592	chr2	144281471	144282030	+	0	NA	intron (NM_001376309, intron 1 of 12)	MLT1B|LTR|ERVL-MaLR	12725	NM_001376328	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
80444	chr16	2659801	2660250	+	0	NA	non-coding (NR_040023, exon 3 of 3)	non-coding (NR_040023, exon 3 of 3)	13414	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
148254	chr20	63654701	63654900	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-1190	NR_075070	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
68218	chr14	76920871	76921400	+	0	NA	Intergenic	Intergenic	-38503	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
34642	chr10	133320951	133321800	+	0	NA	Intergenic	LTR12|LTR|ERV1	-9038	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
92897	chr17	16445621	16446330	+	0	NA	intron (NM_207387, intron 2 of 2)	AluSx|SINE|Alu	4749	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
153932	chr22	30333171	30334030	+	0	NA	3' UTR (NM_005877, exon 16 of 16)	3' UTR (NM_005877, exon 16 of 16)	-6659	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
206102	chr7	27204521	27205450	+	0	NA	non-coding (NR_037843, exon 3 of 3)	non-coding (NR_037843, exon 3 of 3)	4564	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
165537	chr3	100708771	100710200	+	0	NA	promoter-TSS (NM_001195478)	promoter-TSS (NM_001195478)	-9	NM_006070	10342		NM_006070	ENSG00000114354	TFG	HMSNP|SPG57|TF6|TRKT3	trafficking from ER to golgi regulator	protein-coding
88467	chr16	85034971	85035130	+	0	NA	intron (NM_001286566, intron 1 of 11)	intron (NM_001286566, intron 1 of 11)	7299	NM_001297766	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
58027	chr12	124432401	124432980	+	0	NA	intron (NM_001077261, intron 10 of 47)	intron (NM_001077261, intron 10 of 47)	-95448	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
10166	chr1	61077801	61078780	+	0	NA	intron (NM_001145511, intron 1 of 10)	intron (NM_001145511, intron 1 of 10)	1063	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
208275	chr7	65835271	65835430	+	0	NA	Intergenic	Intergenic	-37724	NM_173517	154807		NM_173517	ENSG00000196715	VKORC1L1	-	vitamin K epoxide reductase complex subunit 1 like 1	protein-coding
40031	chr11	62677451	62677750	+	0	NA	exon (NM_001286078, exon 5 of 7)	exon (NM_001286078, exon 5 of 7)	1473	NM_001286077	51035		NM_015853	ENSG00000162191	UBXN1	2B28|SAKS1|UBXD10	UBX domain protein 1	protein-coding
190489	chr5	180344571	180344730	+	0	NA	intron (NM_005110, intron 1 of 18)	intron (NM_005110, intron 1 of 18)	8686	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
46333	chr11	125495701	125496580	+	0	NA	5' UTR (NM_022549, exon 1 of 2)	5' UTR (NM_022549, exon 1 of 2)	125	NM_005103	9638		NM_005103	ENSG00000149557	FEZ1	UNC-76	fasciculation and elongation protein zeta 1	protein-coding
196261	chr6	42926171	42926330	+	0	NA	TTS (NM_001243170)	TTS (NM_001243170)	-1752	NR_134881	10695		NM_006586	ENSG00000137161	CNPY3	CAG4A|DEE60|EIEE60|ERDA5|PRAT4A|TNRC5	canopy FGF signaling regulator 3	protein-coding
93872	chr17	21036371	21036730	+	0	NA	intron (NM_015276, intron 1 of 12)	L1MC3|LINE|L1	6461	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
137243	chr2	191691871	191692030	+	0	NA	intron (NR_131917, intron 1 of 2)	intron (NR_131917, intron 1 of 2)	1769	NR_131917	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
175263	chr4	67484201	67484400	+	0	NA	intron (NR_155754, intron 17 of 18)	Tigger3b|DNA|TcMar-Tigger	61203	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
121091	chr19	45901151	45902000	+	0	NA	exon (NM_001012643, exon 2 of 3)	exon (NM_001012643, exon 2 of 3)	1038	NM_001012643	339344		NM_001012643	ENSG00000176182	MYPOP	P42pop	Myb related transcription factor, partner of profilin	protein-coding
141702	chr2	241835701	241835900	+	0	NA	Intergenic	LTR12F|LTR|ERV1	23094	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
129438	chr2	69477571	69477930	+	0	NA	intron (NM_014911, intron 20 of 21)	intron (NM_014911, intron 20 of 21)	-38183	NM_001374284	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
177431	chr4	112520221	112520480	+	0	NA	intron (NR_161159, intron 1 of 3)	intron (NR_161159, intron 1 of 3)	-4170	NM_024019	63973		NM_024019	ENSG00000178403	NEUROG2	Atoh4|Math4A|NGN2|bHLHa8|ngn-2	neurogenin 2	protein-coding
45566	chr11	118808251	118808780	+	0	NA	Intergenic	L1MC4|LINE|L1	-17351	NM_004397	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
207329	chr7	44050571	44051280	+	0	NA	promoter-TSS (NR_106896)	promoter-TSS (NR_106896)	-841	NR_106896	102466985		NR_106896	ENSG00000284067	MIR6837	hsa-mir-6837	microRNA 6837	ncRNA
200741	chr6	137763651	137763950	+	0	NA	Intergenic	Intergenic	-24763	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
75867	chr15	69711471	69711830	+	0	NA	Intergenic	Intergenic	119450	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
137327	chr2	196088351	196088450	+	0	NA	Intergenic	AluJo|SINE|Alu	-19563	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
97928	chr17	45154801	45155550	+	0	NA	Intergenic	Intergenic	-4999	NM_001303437	124790		NM_144608	ENSG00000168517	HEXIM2	L3	HEXIM P-TEFb complex subunit 2	protein-coding
55832	chr12	108939651	108939830	+	0	NA	intron (NM_018711, intron 8 of 15)	MLT1J2|LTR|ERVL-MaLR	59648	NM_001917	1610		NM_001917	ENSG00000110887	DAO	DAAO|DAMOX|OXDA	D-amino acid oxidase	protein-coding
14633	chr1	145467751	145468580	+	0	NA	Intergenic	LTR56|LTR|ERV1	-62387	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
21060	chr1	203289171	203290000	+	0	NA	TTS (NR_117097)	TTS (NR_117097)	1885	NR_117098	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
165316	chr3	87333351	87333650	+	0	NA	Intergenic	MER57F|LTR|ERV1	-56916	NM_000306	5449		NM_000306	ENSG00000064835	POU1F1	CPHD1|GHF-1|PIT1|POU1F1a|Pit-1	POU class 1 homeobox 1	protein-coding
225634	chr9	36330801	36331200	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-54022	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
197947	chr6	89929771	89930130	+	0	NA	3' UTR (NM_001170794, exon 7 of 7)	3' UTR (NM_001170794, exon 7 of 7)	35481	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
32731	chr10	104300071	104300430	+	0	NA	TTS (NM_001191013)	TTS (NM_001191013)	-23114	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
176085	chr4	82893121	82893600	+	0	NA	TTS (NR_034076)	TTS (NR_034076)	-2080	NM_001300744	22872		NM_014933	ENSG00000138674	SEC31A	ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1	SEC31 homolog A, COPII coat complex component	protein-coding
69565	chr14	96812201	96812800	+	0	NA	intron (NM_003384, intron 1 of 12)	L1MB7|LINE|L1	15118	NM_003384	7443		NM_003384	ENSG00000100749	VRK1	HMNR10|PCH1|PCH1A	VRK serine/threonine kinase 1	protein-coding
123071	chr19	51374571	51374730	+	0	NA	Intergenic	Intergenic	-1996	NM_005601	4818		NM_005601	ENSG00000105374	NKG7	GIG1|GMP-17|p15-TIA-1	natural killer cell granule protein 7	protein-coding
52766	chr12	56675721	56676230	+	0	NA	intron (NM_001282601, intron 1 of 6)	AluSp|SINE|Alu	12309	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
204749	chr7	5585871	5586500	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6631	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
134747	chr2	144889621	144889880	+	0	NA	intron (NR_033870, intron 2 of 4)	MER20|DNA|hAT-Charlie	221783	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
164590	chr3	66186801	66187400	+	0	NA	intron (NM_173471, intron 1 of 10)	intron (NM_173471, intron 1 of 10)	-33642	NM_001350993	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
145129	chr20	38814171	38814800	+	0	NA	intron (NM_001172735, intron 1 of 9)	MIRb|SINE|MIR	8788	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
28576	chr10	50992071	50992430	+	0	NA	intron (NM_001098512, intron 1 of 17)	intron (NM_001098512, intron 1 of 17)	1362	NM_001098512	5592		NM_006258	ENSG00000185532	PRKG1	AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha	protein kinase cGMP-dependent 1	protein-coding
143889	chr20	32574501	32575530	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	10318	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
71368	chr14	105493251	105493650	+	0	NA	intron (NM_001134876, intron 4 of 6)	intron (NM_001134876, intron 4 of 6)	2201	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
210858	chr7	101121471	101122030	+	0	NA	Intergenic	AluSg|SINE|Alu	-5354	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
21095	chr1	203338371	203338950	+	0	NA	Intergenic	Intergenic	12462	NR_103757	2331		NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding
215931	chr8	8301121	8301380	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	72680	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
62484	chr13	99389451	99389750	+	0	NA	Intergenic	Intergenic	33469	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
137821	chr2	200406571	200406730	+	0	NA	intron (NM_001282744, intron 3 of 12)	intron (NM_001282744, intron 3 of 12)	97700	NM_001282744	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
200412	chr6	134631771	134632400	+	0	NA	Intergenic	Intergenic	-92080	NR_125856	101928304		NR_125855	ENSG00000232310	LINC03002	-	long intergenic non-protein coding RNA 3002	ncRNA
86720	chr16	67561721	67564380	+	0	NA	promoter-TSS (NR_158165)	promoter-TSS (NR_158165)	524	NM_006565	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
69590	chr14	97290151	97290250	+	0	NA	Intergenic	MIRb|SINE|MIR	135343	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
6053	chr1	27133821	27134280	+	0	NA	intron (NM_003047, intron 1 of 11)	AluSg7|SINE|Alu	21075	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
117873	chr19	32586021	32586700	+	0	NA	intron (NM_004708, intron 4 of 5)	intron (NM_004708, intron 4 of 5)	5170	NM_004708	9141		NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
194481	chr6	33227671	33228080	+	0	NA	Intergenic	Intergenic	19375	NM_002931	6015		NM_002931	ENSG00000204227	RING1	RING1A|RNF1	ring finger protein 1	protein-coding
153505	chr22	26493401	26494300	+	0	NA	3' UTR (NM_001013694, exon 7 of 7)	3' UTR (NM_001013694, exon 7 of 7)	9973	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
17977	chr1	160470801	160471510	+	0	NA	Intergenic	Intergenic	52100	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
177396	chr4	112234971	112235350	+	0	NA	intron (NM_018569, intron 1 of 9)	intron (NM_018569, intron 1 of 9)	3373	NM_001128426	55435		NM_018569	ENSG00000138660	AP1AR	2C18|C4orf16|GBAR|PRO0971|gamma-BAR	adaptor related protein complex 1 associated regulatory protein	protein-coding
98572	chr17	47715601	47716430	+	0	NA	Intergenic	Intergenic	-17221	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
71677	chr15	19995481	19996000	+	0	NA	Intergenic	L1MEg|LINE|L1	-287004	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
225733	chr9	37028971	37029780	+	0	NA	intron (NR_103999, intron 1 of 8)	intron (NR_103999, intron 1 of 8)	4893	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
83904	chr16	28990301	28991230	+	0	NA	TTS (NM_001014989)	TTS (NM_001014989)	5713	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
114175	chr19	11379351	11379980	+	0	NA	intron (NM_000121, intron 6 of 7)	L2b|LINE|L2	4649	NM_000121	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
4592	chr1	22077671	22078250	+	0	NA	intron (NM_001039802, intron 2 of 6)	intron (NM_001039802, intron 2 of 6)	25251	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
111456	chr19	3857671	3857830	+	0	NA	intron (NR_027149, intron 1 of 2)	intron (NR_027149, intron 1 of 2)	11288	NM_001145640	23217		NM_015174	ENSG00000105278	ZFR2	KIAA1086	zinc finger RNA binding protein 2	protein-coding
175686	chr4	77045751	77046250	+	0	NA	Intergenic	AluSg|SINE|Alu	28910	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
192992	chr6	28132521	28132980	+	0	NA	intron (NR_103455, intron 1 of 2)	intron (NR_103455, intron 1 of 2)	4566	NR_103456	100129195		NR_103455	ENSG00000269293	ZSCAN16-AS1	-	ZSCAN16 antisense RNA 1	ncRNA
139911	chr2	230736801	230737000	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	23352	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
26664	chr10	22607421	22607830	+	0	NA	intron (NM_001330062, intron 3 of 9)	intron (NM_001330062, intron 3 of 9)	106483	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
219762	chr8	81091951	81092430	+	0	NA	intron (NM_018440, intron 1 of 8)	AluJb|SINE|Alu	19878	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
57305	chr12	121662121	121662930	+	0	NA	intron (NM_173855, intron 1 of 5)	AluSg|SINE|Alu	7129	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
218544	chr8	54013871	54014430	+	0	NA	intron (NM_006756, intron 1 of 9)	MIR3|SINE|MIR	8298	NM_006756	6917		NM_006756	ENSG00000187735	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A1	protein-coding
227290	chr9	89404051	89404730	+	0	NA	intron (NM_001371200, intron 5 of 20)	intron (NM_001371200, intron 5 of 20)	75500	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
61686	chr13	74030751	74031050	+	0	NA	intron (NM_007249, intron 1 of 7)	MIRc|SINE|MIR	103029	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
106426	chr18	13562451	13563230	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-48274	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
122920	chr19	50657921	50658600	+	0	NA	TTS (NM_016148)	TTS (NM_016148)	8815	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
56253	chr12	111999501	111999900	+	0	NA	intron (NM_138341, intron 2 of 9)	intron (NM_138341, intron 2 of 9)	13465	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
167572	chr3	129439221	129441250	+	0	NA	promoter-TSS (NM_052990)	promoter-TSS (NM_052990)	11	NM_052989	55764		NM_018262	ENSG00000163913	IFT122	CED|CED1|CFAP80|FAP80|SPG|WDR10|WDR10p|WDR140	intraflagellar transport 122	protein-coding
57456	chr12	121920201	121920930	+	0	NA	intron (NM_001178003, intron 1 of 17)	AluY|SINE|Alu	1973	NM_001178003	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
335	chr1	997151	997250	+	0	NA	Intergenic	Intergenic	2897	NM_021170	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
199515	chr6	118708101	118708500	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	1775	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
58397	chr12	131902171	131902330	+	0	NA	intron (NM_003565, intron 3 of 27)	intron (NM_003565, intron 3 of 27)	7628	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
103395	chr17	78169711	78170600	+	0	NA	intron (NM_004710, intron 1 of 3)	intron (NM_004710, intron 1 of 3)	1574	NM_004710	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
71924	chr15	22798401	22798950	+	0	NA	intron (NM_144599, intron 1 of 4)	AluY|SINE|Alu	12031	NM_144599	123606		NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
95044	chr17	32517171	32517930	+	0	NA	intron (NM_015194, intron 21 of 21)	MER5B|DNA|hAT-Charlie	30557	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
87679	chr16	74608101	74608300	+	0	NA	Intergenic	Intergenic	-1086	NM_001145666	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
17624	chr1	157044121	157044380	+	0	NA	intron (NM_001377418, intron 1 of 40)	intron (NM_001377418, intron 1 of 40)	1492	NM_001377419	9826		NM_014784	ENSG00000132694	ARHGEF11	GTRAP48|PDZ-RHOGEF	Rho guanine nucleotide exchange factor 11	protein-coding
215759	chr8	2000971	2002500	+	0	NA	exon (NM_014867, exon 2 of 2)	exon (NM_014867, exon 2 of 2)	28058	NM_014867	9920		NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
129361	chr2	68776971	68777580	+	0	NA	intron (NM_001364820, intron 2 of 9)	intron (NM_001364820, intron 2 of 9)	2365	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
65718	chr14	52924251	52924350	+	0	NA	intron (NM_001134999, intron 2 of 15)	L2a|LINE|L2	26750	NM_006832	10979		NM_006832	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	FERM domain containing kindlin 2	protein-coding
135348	chr2	160399971	160400200	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	7797	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
177368	chr4	110518821	110519180	+	0	NA	intron (NR_166844, intron 7 of 19)	intron (NR_166844, intron 7 of 19)	42845	NM_001379613	2028		NM_001977	ENSG00000138792	ENPEP	APA|CD249|gp160	glutamyl aminopeptidase	protein-coding
183705	chr5	80972851	80973350	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-12193	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
46215	chr11	123680971	123681530	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-26626	NM_001040151	55800		NM_018400	ENSG00000166257	SCN3B	ATFB16|BRGDA7|HSA243396|SCNB3	sodium voltage-gated channel beta subunit 3	protein-coding
97364	chr17	43309571	43310600	+	0	NA	Intergenic	AluJr4|SINE|Alu	-9854	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
72251	chr15	30552171	30552530	+	0	NA	intron (NM_001355476, intron 1 of 18)	intron (NM_001355476, intron 1 of 18)	272	NM_001355476	727909		NM_001355476	ENSG00000178115	GOLGA8Q	-	golgin A8 family member Q	protein-coding
104724	chr17	81635351	81635700	+	0	NA	intron (NM_001369698, intron 1 of 16)	intron (NM_001369698, intron 1 of 16)	1587	NM_017921	55666		NM_017921	ENSG00000182446	NPLOC4	NPL4	NPL4 homolog, ubiquitin recognition factor	protein-coding
14354	chr1	144012201	144012880	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-39021	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
59088	chr13	21071721	21072130	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-10339	NM_014572	26524		NM_014572	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
95552	chr17	36725901	36726780	+	0	NA	Intergenic	Intergenic	124757	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
8646	chr1	41783251	41783550	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	135522	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
145994	chr20	46400821	46401930	+	0	NA	intron (NM_001318253, intron 1 of 21)	intron (NM_001318253, intron 1 of 21)	5240	NM_001318253	63916		NM_022086	ENSG00000062598	ELMO2	CED-12|CED12|Ced-12A|ELMO-2|VMPI	engulfment and cell motility 2	protein-coding
5602	chr1	26041751	26042050	+	0	NA	intron (NM_032513, intron 4 of 6)	intron (NM_032513, intron 4 of 6)	4218	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
167465	chr3	129110471	129110830	+	0	NA	intron (NM_001204890, intron 11 of 12)	AluY|SINE|Alu	11154	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
118529	chr19	36015721	36016180	+	0	NA	3' UTR (NM_015526, exon 14 of 14)	3' UTR (NM_015526, exon 14 of 14)	1448	NM_001347907	101927572		NM_001290056		LOC101927572	-	uncharacterized LOC101927572	ncRNA
125610	chr2	18546621	18547030	+	0	NA	Intergenic	Intergenic	13828	NM_020905	57665		NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14	protein-coding
48986	chr12	13104351	13104480	+	0	NA	promoter-TSS (NM_001080555)	promoter-TSS (NM_001080555)	-748	NM_001367362	83445		NM_031289	ENSG00000111305	GSG1	-	germ cell associated 1	protein-coding
225116	chr9	33460971	33461130	+	0	NA	TTS (NM_022917)	TTS (NM_022917)	6885	NR_106910	102465512		NR_106910	ENSG00000275651	MIR6851	hsa-mir-6851	microRNA 6851	ncRNA
113638	chr19	10332801	10334030	+	0	NA	TTS (NM_001320608)	TTS (NM_001320608)	114	NM_133452	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
128894	chr2	64137951	64138780	+	0	NA	intron (NM_020651, intron 1 of 6)	L2a|LINE|L2	6055	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
132770	chr2	109810321	109811180	+	0	NA	intron (NM_032260, intron 7 of 19)	intron (NM_032260, intron 7 of 19)	16141	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
224272	chr9	6106521	6107150	+	0	NA	Intergenic	LTR50|LTR|ERVL	-91211	NM_001243203	26953		NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
104623	chr17	81431251	81431350	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	19888	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
39476	chr11	60998201	60998400	+	0	NA	intron (NM_006725, intron 1 of 12)	MIR|SINE|MIR	26620	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
25556	chr10	7484401	7486000	+	0	NA	Intergenic	Intergenic	-73714	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
36458	chr11	5701571	5701730	+	0	NA	intron (NM_006074, intron 4 of 7)	MLT1C|LTR|ERVL-MaLR	11860	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
150232	chr21	41321101	41321500	+	0	NA	intron (NM_206964, intron 1 of 6)	intron (NM_206964, intron 1 of 6)	4499	NM_058186	54097		NM_058186	ENSG00000183844	FAM3B	2-21|C21orf11|C21orf76|ORF9|PANDER|PRED44	FAM3 metabolism regulating signaling molecule B	protein-coding
33796	chr10	123143051	123143980	+	0	NA	Intergenic	Intergenic	-4607	NM_005519	3167		NM_005519	ENSG00000188816	HMX2	H6L|Nkx5-2	H6 family homeobox 2	protein-coding
37594	chr11	19660201	19660430	+	0	NA	intron (NM_001111018, intron 2 of 38)	intron (NM_001111018, intron 2 of 38)	-52522	NM_001244963	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
180062	chr5	1090571	1090930	+	0	NA	intron (NM_006598, intron 3 of 23).2	intron (NM_006598, intron 3 of 23).2	21313	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
153164	chr22	23790001	23790200	+	0	NA	intron (NM_003073, intron 1 of 8).2	intron (NM_003073, intron 1 of 8).2	3134	NM_001007468	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
48591	chr12	10313321	10313580	+	0	NA	non-coding (NR_147040, exon 4 of 5)	non-coding (NR_147040, exon 4 of 5)	5580	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
19053	chr1	169711171	169712300	+	0	NA	promoter-TSS (NM_000655)	promoter-TSS (NM_000655)	-115	NM_000655	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
175328	chr4	68345751	68346330	+	0	NA	intron (NM_001031732, intron 1 of 16)	(TG)n|Simple_repeat|Simple_repeat	4050	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
144733	chr20	36581101	36581600	+	0	NA	intron (NM_001199535, intron 2 of 4)	intron (NM_001199535, intron 2 of 4)	6796	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
167776	chr3	133412971	133413130	+	0	NA	intron (NM_003571, intron 1 of 6)	intron (NM_003571, intron 1 of 6)	12994	NM_003571	8419		NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding
185295	chr5	126596071	126596430	+	0	NA	Intergenic	AluSg|SINE|Alu	-1031	NM_001201377	501		NM_001182	ENSG00000164904	ALDH7A1	ATQ1|EPD|EPEO4|PDE	aldehyde dehydrogenase 7 family member A1	protein-coding
195551	chr6	37481001	37481200	+	0	NA	3' UTR (NM_015050, exon 24 of 24)	3' UTR (NM_015050, exon 24 of 24)	18793	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
68142	chr14	75540101	75540930	+	0	NA	intron (NM_006399, intron 2 of 2)	intron (NM_006399, intron 2 of 2)	18046	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
116505	chr19	18148171	18148330	+	0	NA	intron (NM_015016, intron 26 of 26)	AluSp|SINE|Alu	-4913	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
32577	chr10	103454101	103454300	+	0	NA	3' UTR (NM_001001412, exon 2 of 2)	3' UTR (NM_001001412, exon 2 of 2)	-1830	NM_015916	51063		NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator family member 2	protein-coding
13622	chr1	116406751	116407050	+	0	NA	intron (NR_024124, intron 1 of 1)	intron (NR_024124, intron 1 of 1)	11659	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
75377	chr15	65641671	65642080	+	0	NA	intron (NM_004727, intron 4 of 9)	intron (NM_004727, intron 4 of 9)	-1004	NM_001254740	9187		NM_004727	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 member 1	protein-coding
84550	chr16	30565101	30565300	+	0	NA	Intergenic	L1MB3|LINE|L1	-6826	NM_001172679	92595		NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
143253	chr20	25060071	25060230	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-1968	NM_001252675	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
192274	chr6	20406351	20406680	+	0	NA	intron (NM_001243076, intron 1 of 6)	intron (NM_001243076, intron 1 of 6)	2836	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
16939	chr1	155913171	155913530	+	0	NA	3' UTR (NM_014949, exon 14 of 14)	3' UTR (NM_014949, exon 14 of 14)	-2001	NM_001256820	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
95756	chr17	38609401	38609600	+	0	NA	Intergenic	Intergenic	-3548	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
219598	chr8	80023671	80024330	+	0	NA	intron (NM_014018, intron 1 of 2)	AluJb|SINE|Alu	6259	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
92698	chr17	14068721	14069870	+	0	NA	promoter-TSS (NM_001303)	promoter-TSS (NM_001303)	163	NR_049718	100874058		NR_049718	ENSG00000236088	COX10-DT	COX10-AS|COX10-AS1|COX10AS	COX10 divergent transcript	ncRNA
53236	chr12	62435321	62436130	+	0	NA	Intergenic	L1M2|LINE|L1	-31101	NM_001278472	23041		NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
62819	chr13	109761801	109762130	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	24618	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
101430	chr17	67420501	67420700	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSz6|SINE|Alu	43319	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
162988	chr3	49716521	49716980	+	0	NA	TTS (NM_198722)	TTS (NM_198722)	2934	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
151234	chr21	45280451	45280950	+	0	NA	intron (NM_133635, intron 4 of 8)	intron (NM_133635, intron 4 of 8)	7195	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
16288	chr1	154163271	154163630	+	0	NA	3' UTR (NM_152263, exon 10 of 10)	3' UTR (NM_152263, exon 10 of 10)	-8334	NM_001159484	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
93362	chr17	18237151	18238230	+	0	NA	exon (NM_004140, exon 14 of 23)	exon (NM_004140, exon 14 of 23)	12055	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
65386	chr14	50741701	50742250	+	0	NA	intron (NM_020921, intron 24 of 30)	intron (NM_020921, intron 24 of 30)	-73669	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
179750	chr5	243521	244180	+	0	NA	intron (NM_001330758, intron 11 of 12)	HERVK9-int|LTR|ERVK	25530	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
181064	chr5	36305851	36305950	+	0	NA	Intergenic	Intergenic	-3998	NM_001323274	202151		NM_145000	ENSG00000164188	RANBP3L	-	RAN binding protein 3 like	protein-coding
39115	chr11	48084321	48084650	+	0	NA	intron (NM_002843, intron 1 of 24)	MER101|LTR|ERV1	-12297	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
176553	chr4	98515371	98515530	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	143161	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
44045	chr11	95158751	95159230	+	0	NA	non-coding (NR_110303, exon 3 of 3)	non-coding (NR_110303, exon 3 of 3)	8451	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
33261	chr10	114511401	114511600	+	0	NA	intron (NM_001322883, intron 6 of 20)	AluSz|SINE|Alu	15413	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
182011	chr5	55327321	55327580	+	0	NA	intron (NM_015360, intron 3 of 26)	intron (NM_015360, intron 3 of 26)	19461	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
239065	chrY	7297371	7297530	+	0	NA	intron (NR_028062, intron 1 of 7)	AluJr|SINE|Alu	23478	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
165425	chr3	98513371	98513530	+	0	NA	Intergenic	AluSz|SINE|Alu	9452	NM_001040181	56650		NM_019895	ENSG00000080822	CLDND1	C3orf4|GENX-3745|Z38	claudin domain containing 1	protein-coding
141381	chr2	240731671	240732230	+	0	NA	intron (NM_001379639, intron 36 of 47)	intron (NM_001379639, intron 36 of 47)	40084	NM_198998	375318		NM_198998	ENSG00000184945	AQP12A	AQP-12|AQP12|AQPX2	aquaporin 12A	protein-coding
224129	chr9	4713801	4714140	+	0	NA	intron (NM_001199856, intron 4 of 4)	intron (NM_001199856, intron 4 of 4)	12257	NM_001199856	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
1922	chr1	6472471	6472830	+	0	NA	intron (NM_001042665, intron 9 of 20)	intron (NM_001042665, intron 9 of 20)	-6455	NM_148966	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
164023	chr3	53224471	53224630	+	0	NA	TTS (NM_001135055)	TTS (NM_001135055)	31472	NM_001064	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
66129	chr14	60161401	60161830	+	0	NA	intron (NM_001322280, intron 1 of 6)	Plat_L3|LINE|CR1	3783	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
210970	chr7	101741901	101742100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-74007	NM_181500	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
206285	chr7	29988551	29990100	+	0	NA	intron (NM_001145514, intron 1 of 7)	CpG	476	NM_014766	9805		NM_014766	ENSG00000136193	SCRN1	SES1	secernin 1	protein-coding
48262	chr12	8624971	8625130	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-12191	NM_001330343	57379		NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HEL-S-284|HIGM2	activation induced cytidine deaminase	protein-coding
158310	chr22	50420771	50421130	+	0	NA	intron (NM_001351641, intron 8 of 23)	MamRep605|LTR?|LTR?	13508	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
118390	chr19	35732221	35732550	+	0	NA	exon (NM_014727, exon 28 of 37)	exon (NM_014727, exon 28 of 37)	10067	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
110018	chr19	1442851	1443280	+	0	NA	Intergenic	Intergenic	4669	NM_001308226	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
150098	chr21	37436321	37437330	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	16526	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
144634	chr20	35946171	35946330	+	0	NA	intron (NM_016436, intron 17 of 17)	AluSx|SINE|Alu	8252	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
30150	chr10	74149321	74149650	+	0	NA	intron (NM_207012, intron 1 of 9)	AluSg|SINE|Alu	1343	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
157884	chr22	49728301	49728500	+	0	NA	Intergenic	Intergenic	-70881	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
160545	chr3	30673051	30673150	+	0	NA	intron (NM_001024847, intron 5 of 7)	intron (NM_001024847, intron 5 of 7)	66499	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
148311	chr20	63737101	63738580	+	0	NA	exon (NM_001305654, exon 3 of 6)	exon (NM_001305654, exon 3 of 6)	1176	NM_017806	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
75668	chr15	67783071	67783780	+	0	NA	intron (NM_145160, intron 21 of 21)	L2c|LINE|L2	-42084	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
33592	chr10	119515051	119515350	+	0	NA	intron (NM_002925, intron 4 of 4)	Tigger15a|DNA|TcMar-Tigger	21333	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
8040	chr1	38527271	38527700	+	0	NA	Intergenic	MIRb|SINE|MIR	52289	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
25752	chr10	9305051	9305280	+	0	NA	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-9572	NR_120635	101928272		NR_120635		LOC101928272	-	uncharacterized LOC101928272	ncRNA
105101	chr17	82153801	82154750	+	0	NA	3' UTR (NM_001316321, exon 15 of 15)	3' UTR (NM_001316321, exon 15 of 15)	-56039	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
47173	chr12	785471	785980	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	32802	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
151380	chr21	45909721	45909980	+	0	NA	intron (NM_020528, intron 7 of 14)	intron (NM_020528, intron 7 of 14)	61700	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
40945	chr11	65315501	65316630	+	0	NA	intron (NM_006779, intron 1 of 1)	MIR3|SINE|MIR	1199	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
88294	chr16	84084921	84085450	+	0	NA	intron (NM_003791, intron 9 of 22)	intron (NM_003791, intron 9 of 22)	31757	NM_003791	8720		NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SEDKF|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
27640	chr10	32957221	32959330	+	0	NA	promoter-TSS (NM_002211)	promoter-TSS (NM_002211)	-45	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
23366	chr1	228160151	228161550	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	3998	NR_103539	574432		NR_103539	ENSG00000203684	IBA57-DT	C1orf148|IBA57-AS1	IBA57 divergent transcript	ncRNA
147169	chr20	56453401	56453600	+	0	NA	intron (NM_001164114, intron 5 of 5)	intron (NM_001164114, intron 5 of 5)	-15085	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
203158	chr6	167043201	167043400	+	0	NA	TTS (NM_001278690)	TTS (NM_001278690)	43903	NM_194429	11116		NM_007045	ENSG00000213066	CEP43	FGFR1OP|FOP	centrosomal protein 43	protein-coding
51166	chr12	50210021	50210280	+	0	NA	intron (NM_001113547, intron 1 of 7)	AluSz|SINE|Alu	-8617	NM_001243775	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
28772	chr10	62047601	62048450	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-1332	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
174727	chr4	42675001	42675550	+	0	NA	Intergenic	MER57A1|LTR|ERV1	-18170	NM_001105529	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
144116	chr20	33990301	33990850	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-3336	NM_007367	22913		NM_007367	ENSG00000125970	RALY	HNRPCL2|P542	RALY heterogeneous nuclear ribonucleoprotein	protein-coding
52562	chr12	56155371	56155900	+	0	NA	intron (NM_001199629, intron 5 of 7)	intron (NM_001199629, intron 5 of 7)	-2724	NM_021019	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
150066	chr21	37394621	37394880	+	0	NA	intron (NM_001347723, intron 1 of 10)	MER1B|DNA|hAT-Charlie	-24155	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
228462	chr9	99847371	99847530	+	0	NA	exon (NM_006981, exon 7 of 8)	exon (NM_006981, exon 7 of 8)	25565	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
13275	chr1	112840401	112840830	+	0	NA	intron (NR_103746, intron 2 of 6)	AluJr|SINE|Alu	10028	NR_103746	100996702		NR_103746	ENSG00000215866	LINC01356	LIMp27	long intergenic non-protein coding RNA 1356	ncRNA
202461	chr6	158167301	158168870	+	0	NA	promoter-TSS (NM_207118)	promoter-TSS (NM_207118)	177	NM_032861	84947		NM_032861	ENSG00000122335	SERAC1	-	serine active site containing 1	protein-coding
164329	chr3	57814671	57815350	+	0	NA	intron (NR_165328, intron 2 of 22)	intron (NR_165328, intron 2 of 22)	57754	NM_001304421	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
224994	chr9	33111571	33112350	+	0	NA	3' UTR (NM_001497, exon 6 of 6)	3' UTR (NM_001497, exon 6 of 6)	3268	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
35139	chr11	718651	719050	+	0	NA	intron (NM_022772, intron 4 of 20)	AluY|SINE|Alu	-11767	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
31131	chr10	89419471	89419880	+	0	NA	3' UTR (NM_012420, exon 2 of 2)	3' UTR (NM_012420, exon 2 of 2)	5107	NM_012420	24138		NM_012420	ENSG00000152778	IFIT5	ISG58|P58|RI58	interferon induced protein with tetratricopeptide repeats 5	protein-coding
180236	chr5	1593801	1594800	+	0	NA	intron (NR_003263, intron 1 of 6)	CpG	231	NR_003263	728609		NR_003263	ENSG00000291055	SDHAP3	SDHACL|SDHAL	SDHA pseudogene 3	pseudo
121873	chr19	48319801	48320740	+	0	NA	promoter-TSS (NM_144577)	promoter-TSS (NM_144577)	-771	NM_144577	93233		NM_144577	ENSG00000105479	ODAD1	CCDC114|CILD20	outer dynein arm docking complex subunit 1	protein-coding
156638	chr22	41620261	41622300	+	0	NA	promoter-TSS (NM_001469)	promoter-TSS (NM_001469)	-15	NM_001288976	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
162549	chr3	48643101	48643500	+	0	NA	TTS (NR_039956)	TTS (NR_039956)	980	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
202790	chr6	159103721	159104500	+	0	NA	Intergenic	Intergenic	-58958	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
136006	chr2	172426901	172428850	+	0	NA	exon (NM_001365529, exon 1 of 25)	exon (NM_001365529, exon 1 of 25)	289	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
160827	chr3	33056251	33056550	+	0	NA	intron (NM_001135602, intron 3 of 12)	intron (NM_001135602, intron 3 of 12)	40432	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
31838	chr10	99630471	99630700	+	0	NA	Intergenic	Intergenic	-10146	NM_031212	81894		NM_031212	ENSG00000155287	SLC25A28	MFRN2|MRS3/4|MRS4L|NPD016	solute carrier family 25 member 28	protein-coding
177841	chr4	127880421	127881950	+	0	NA	promoter-TSS (NM_001190801)	promoter-TSS (NM_001190801)	-59	NM_001190801	10733		NM_014264	ENSG00000142731	PLK4	MCCRP2|SAK|STK18	polo like kinase 4	protein-coding
135861	chr2	170930101	170931000	+	0	NA	intron (NM_015530, intron 1 of 9)	intron (NM_015530, intron 1 of 9)	1297	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
12994	chr1	110982251	110982830	+	0	NA	Intergenic	Intergenic	-18596	NM_001006945	55791		NM_018372	ENSG00000121931	LRIF1	C1orf103|FSHD3|HBiX1|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
6832	chr1	31019171	31019930	+	0	NA	intron (NM_014676, intron 3 of 21)	intron (NM_014676, intron 3 of 21)	46167	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
191125	chr6	4055421	4055730	+	0	NA	intron (NR_146785, intron 11 of 20)	intron (NR_146785, intron 11 of 20)	23562	NM_173563	222826		NM_173563	ENSG00000145975	FAM217A	C6orf146	family with sequence similarity 217 member A	protein-coding
145272	chr20	40968671	40969530	+	0	NA	Intergenic	Intergenic	-11613	NR_145524	100128988		NR_145524		LOC100128988	-	uncharacterized LOC100128988	ncRNA
129848	chr2	72916001	72916500	+	0	NA	Intergenic	CpG	-1269	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
214691	chr7	150978901	150979580	+	0	NA	promoter-TSS (NM_000238)	promoter-TSS (NM_000238)	-919	NM_000238	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
96340	chr17	40056551	40056850	+	0	NA	Intergenic	Intergenic	-2292	NR_052017	9862		NM_014815	ENSG00000008838	MED24	ARC100|CRSP100|CRSP4|DRIP100|MED5|THRAP4|TRAP100	mediator complex subunit 24	protein-coding
116164	chr19	17400671	17401250	+	0	NA	Intergenic	AluSz|SINE|Alu	4670	NM_004335	684		NM_004335	ENSG00000130303	BST2	CD317|HM1.24|TETHERIN	bone marrow stromal cell antigen 2	protein-coding
87902	chr16	78894751	78895480	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	705622	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
208484	chr7	67219951	67220250	+	0	NA	intron (NM_018264, intron 15 of 15)	L1M4c|LINE|L1	-58192	NM_001382715	442572		NM_001382715	ENSG00000230358	SPDYE21	SPDYE21P	speedy/RINGO cell cycle regulator family member E21	protein-coding
119189	chr19	39429021	39429850	+	0	NA	Intergenic	AluSz|SINE|Alu	6514	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
86637	chr16	67441121	67441380	+	0	NA	intron (NM_004691, intron 4 of 7)	intron (NM_004691, intron 4 of 7)	10129	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
135605	chr2	168088421	168088680	+	0	NA	intron (NM_013233, intron 10 of 17)	intron (NM_013233, intron 10 of 17)	-147406	NR_131227	105616981		NR_131227	ENSG00000235335	B3GALT1-AS1	-	B3GALT1 antisense RNA 1	ncRNA
22919	chr1	225920121	225920580	+	0	NA	3' UTR (NM_013328, exon 7 of 7)	3' UTR (NM_013328, exon 7 of 7)	1792	NR_106799	102466270		NR_106799	ENSG00000284519	MIR6741	hsa-mir-6741	microRNA 6741	ncRNA
228575	chr9	104093201	104094750	+	0	NA	promoter-TSS (NM_001042550)	promoter-TSS (NM_001042550)	-285	NM_001265602	10592		NM_006444	ENSG00000136824	SMC2	CAP-E|CAPE|SMC-2|SMC2L1	structural maintenance of chromosomes 2	protein-coding
233375	chr9	137513871	137514030	+	0	NA	intron (NM_001098537, intron 12 of 34)	intron (NM_001098537, intron 12 of 34)	36452	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
36545	chr11	6606911	6607930	+	0	NA	3' UTR (NM_006284, exon 5 of 5)	3' UTR (NM_006284, exon 5 of 5)	3646	NM_001014795	3611		NM_004517	ENSG00000166333	ILK	HEL-S-28|ILK-1|ILK-2|P59|p59ILK	integrin linked kinase	protein-coding
142067	chr20	2172521	2172800	+	0	NA	Intergenic	Intergenic	-34268	NR_161305	388780		NR_161305		LINC03086	-	long intergenic non-protein coding RNA 3086	ncRNA
20604	chr1	198919301	198920500	+	0	NA	intron (NR_040073, intron 1 of 2)	intron (NR_040073, intron 1 of 2)	17529	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
127456	chr2	42200121	42200580	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-30119	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
131483	chr2	96504401	96504600	+	0	NA	intron (NR_104346, intron 1 of 3)	intron (NR_104346, intron 1 of 3)	857	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
233840	chrX	1502221	1503830	+	0	NA	intron (NM_178129, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	34160	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
98776	chr17	48132601	48132800	+	0	NA	TTS (NM_003726)	TTS (NM_003726)	23811	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
106315	chr18	12893751	12894230	+	0	NA	Intergenic	L2|LINE|L2	-9655	NM_080422	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
81810	chr16	11549451	11549830	+	0	NA	exon (NM_001136472, exon 4 of 4)	exon (NM_001136472, exon 4 of 4)	-22393	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
87371	chr16	70429201	70429400	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	9800	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
52291	chr12	54589421	54589680	+	0	NA	promoter-TSS (NM_006741)	promoter-TSS (NM_006741)	-891	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
138413	chr2	205075971	205076330	+	0	NA	intron (NM_205863, intron 4 of 21)	intron (NM_205863, intron 4 of 21)	530675	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
79574	chr16	995371	995730	+	0	NA	Intergenic	Intergenic	13780	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
135955	chr2	172081021	172082080	+	0	NA	non-coding (NR_136276, exon 9 of 9)	non-coding (NR_136276, exon 9 of 9)	-3957	NM_001038493	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
188367	chr5	151778521	151778980	+	0	NA	intron (NM_198395, intron 1 of 11)	L1ME1|LINE|L1	-6574	NR_132345	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
219566	chr8	78762451	78762550	+	0	NA	intron (NM_000880, intron 2 of 5)	intron (NM_000880, intron 2 of 5)	-38126	NR_077236	101241902		NR_077236		C4orf46P3	-	C4orf46 pseudogene 3	pseudo
211290	chr7	103155371	103156380	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-6776	NM_198990	222236		NM_198990	ENSG00000161048	NAPEPLD	C7orf18|FMP30|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding
201414	chr6	146568251	146568450	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	24517	NM_006834	10981		NM_006834	ENSG00000118508	RAB32	-	RAB32, member RAS oncogene family	protein-coding
80483	chr16	2706301	2706980	+	0	NA	intron (NM_018992, intron 5 of 5)	intron (NM_018992, intron 5 of 5)	13584	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
124144	chr19	55697351	55697650	+	0	NA	3' UTR (NM_001130072, exon 11 of 11)	3' UTR (NM_001130072, exon 11 of 11)	20875	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
76293	chr15	74245201	74245640	+	0	NA	intron (NM_025055, intron 2 of 18)	intron (NM_025055, intron 2 of 18)	9094	NM_025055	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
66097	chr14	59504721	59505050	+	0	NA	TTS (NM_001164399)	TTS (NM_001164399)	20368	NM_016475	51528		NM_016475	ENSG00000050130	JKAMP	C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP	JNK1/MAPK8 associated membrane protein	protein-coding
77496	chr15	84633201	84634580	+	0	NA	non-coding (NR_004859, exon 2 of 5)	non-coding (NR_004859, exon 2 of 5)	2430	NR_003654	54581		NM_022050		SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
78357	chr15	91311671	91312430	+	0	NA	Intergenic	L1M4b|LINE|L1	-151289	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
237403	chrX	119602571	119602730	+	0	NA	intron (NM_017544, intron 2 of 3)	MER5A|DNA|hAT-Charlie	3774	NM_017544	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
118738	chr19	38312751	38313050	+	0	NA	intron (NM_001145463, intron 1 of 8)	intron (NM_001145463, intron 1 of 8)	2880	NM_001145461	90522		NM_033557	ENSG00000167645	YIF1B	FinGER8|KABAMAS	Yip1 interacting factor homolog B, membrane trafficking protein	protein-coding
78159	chr15	90418051	90418630	+	0	NA	intron (NM_003870, intron 2 of 37)	AluJr|SINE|Alu	30098	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
47008	chr12	258901	259300	+	0	NA	3' UTR (NM_001243392, exon 2 of 2)	3' UTR (NM_001243392, exon 2 of 2)	-1801	NR_120482	102723544		NR_120482	ENSG00000255746	LOC102723544	-	uncharacterized LOC102723544	ncRNA
172392	chr4	1769971	1770130	+	0	NA	Intergenic	Intergenic	-23243	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
109953	chr19	1377201	1377400	+	0	NA	TTS (NM_001382410)	TTS (NM_001382410)	-6607	NM_024407	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
136494	chr2	177230971	177231900	+	0	NA	exon (NM_001145412, exon 5 of 5)	exon (NM_001145412, exon 5 of 5)	18641	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
98256	chr17	46180421	46180850	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluSc8|SINE|Alu	12147	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
213270	chr7	134648221	134648600	+	0	NA	intron (NM_001293085, intron 2 of 3)	AluSq2|SINE|Alu	1557	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
81458	chr16	8888951	8890030	+	0	NA	Intergenic	Intergenic	-20478	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
134796	chr2	147904271	147904430	+	0	NA	intron (NM_001278580, intron 4 of 10)	intron (NM_001278580, intron 4 of 10)	59321	NM_001616	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
3146	chr1	12510471	12511630	+	0	NA	3' UTR (NM_015378, exon 70 of 70)	3' UTR (NM_015378, exon 70 of 70)	3804	NR_003025	677885		NR_003025	ENSG00000239149	SNORA59A	ACA59	small nucleolar RNA, H/ACA box 59A	snoRNA
179882	chr5	633371	634050	+	0	NA	intron (NR_164122, intron 4 of 15)	intron (NR_164122, intron 4 of 15)	21370	NM_018140	55722		NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72	protein-coding
140704	chr2	234313601	234314130	+	0	NA	Intergenic	Intergenic	140730	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
25625	chr10	8082001	8082400	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	27512	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
231395	chr9	130834501	130836150	+	0	NA	promoter-TSS (NM_005157)	promoter-TSS (NM_005157)	71	NM_005157	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
109603	chr19	932301	933750	+	0	NA	intron (NM_005224, intron 3 of 8)	intron (NM_005224, intron 3 of 8)	6990	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
90613	chr17	1636671	1637400	+	0	NA	exon (NM_003693, exon 9 of 11).2	exon (NM_003693, exon 9 of 11).2	-8201	NM_152346	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
188861	chr5	159277401	159277600	+	0	NA	intron (NM_145049, intron 8 of 10)	intron (NM_145049, intron 8 of 10)	14210	NM_145049	134510		NM_145049	ENSG00000164332	UBLCP1	CPUB1	ubiquitin like domain containing CTD phosphatase 1	protein-coding
197996	chr6	90076621	90077080	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	182381	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
189394	chr5	172751501	172752150	+	0	NA	Intergenic	Intergenic	-3678	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
197640	chr6	83859321	83860850	+	0	NA	intron (NM_016230, intron 1 of 15)	intron (NM_016230, intron 1 of 15)	396	NM_016230	51167		NM_016230	ENSG00000065615	CYB5R4	NCB5OR|cb5/cb5R|dJ676J13.1	cytochrome b5 reductase 4	protein-coding
24787	chr1	248908271	248908730	+	0	NA	intron (NM_170725, intron 1 of 2)	intron (NM_170725, intron 1 of 2)	2257	NM_001017434	267002		NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
97874	chr17	45049601	45049800	+	0	NA	intron (NM_001288654, intron 1 of 4)	intron (NM_001288654, intron 1 of 4)	1932	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
67530	chr14	71005151	71005450	+	0	NA	intron (NM_014982, intron 8 of 35)	AluJr|SINE|Alu	97841	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
158163	chr22	50205721	50206200	+	0	NA	intron (NM_031454, intron 1 of 8)	intron (NM_031454, intron 1 of 8)	4949	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
13755	chr1	117001001	117002180	+	0	NA	promoter-TSS (NM_004258)	promoter-TSS (NM_004258)	-160	NM_001256111	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
85794	chr16	56954471	56955230	+	0	NA	Intergenic	AluSz|SINE|Alu	-7100	NM_001286085	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
188605	chr5	157189321	157189780	+	0	NA	intron (NM_005546, intron 1 of 16)	AluSx|SINE|Alu	8710	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
147010	chr20	53578351	53579180	+	0	NA	intron (NM_006526, intron 2 of 5)	intron (NM_006526, intron 2 of 5)	15074	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
181408	chr5	40695671	40696750	+	0	NA	Intergenic	Intergenic	16295	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
9500	chr1	51264101	51264600	+	0	NA	intron (NM_014372, intron 1 of 2)	intron (NM_014372, intron 1 of 2)	28077	NM_014372	26994		NM_014372	ENSG00000123091	RNF11	CGI-123|SID1669	ring finger protein 11	protein-coding
12068	chr1	98854151	98854480	+	0	NA	Intergenic	Intergenic	-149961	NR_033940	100129620		NR_033940	ENSG00000232825	PLPPR5-AS1	-	PLPPR5 antisense RNA 1	ncRNA
140953	chr2	237774701	237775280	+	0	NA	intron (NM_001137550, intron 23 of 23)	intron (NM_001137550, intron 23 of 23)	-23789	NM_001080504	375316		NM_198852	ENSG00000177483	RBM44	-	RNA binding motif protein 44	protein-coding
123893	chr19	55327621	55328380	+	0	NA	Intergenic	Intergenic	-2659	NM_001282011	284417		NM_001085488	ENSG00000180061	TMEM150B	DRAM3|TMEM224|TTN2	transmembrane protein 150B	protein-coding
210699	chr7	100577071	100577630	+	0	NA	exon (NM_002319, exon 11 of 18)	exon (NM_002319, exon 11 of 18)	-2131	NM_001289933								
28252	chr10	45593951	45595400	+	0	NA	5' UTR (NM_145021, exon 1 of 7)	5' UTR (NM_145021, exon 1 of 7)	231	NM_145021	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
6	chr1	16171	17000	+	0	NA	TTS (NR_106918)	TTS (NR_106918)	851	NR_106918	102466751		NR_106918	ENSG00000278267	MIR6859-1	hsa-mir-6859-1	microRNA 6859-1	ncRNA
177347	chr4	110076021	110076280	+	0	NA	intron (NM_024090, intron 2 of 3)	intron (NM_024090, intron 2 of 3)	122465	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
135367	chr2	160429251	160429900	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	-21693	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
205369	chr7	13982971	13983200	+	0	NA	intron (NM_001370556, intron 3 of 11)	intron (NM_001370556, intron 3 of 11)	3429	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
45762	chr11	119239971	119240330	+	0	NA	intron (NM_005188, intron 2 of 15)	AluSz|SINE|Alu	33811	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
29200	chr10	68980151	68980630	+	0	NA	intron (NM_004728, intron 13 of 14)	intron (NM_004728, intron 13 of 14)	-8413	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
16106	chr1	153631271	153631430	+	0	NA	intron (NM_001024210, intron 2 of 4)	MIRb|SINE|MIR	-2632	NM_001244664	26097		NM_015607	ENSG00000160679	CHTOP	C10orf77|C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704	chromatin target of PRMT1	protein-coding
182884	chr5	70027901	70028100	+	0	NA	intron (NM_022978, intron 2 of 2).5	AluSx3|SINE|Alu	2749	NM_021967	8293		NM_021967	ENSG00000172058	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A	protein-coding
185413	chr5	129852851	129852950	+	0	NA	Intergenic	Intergenic	-51565	NM_175856	337876		NM_175856	ENSG00000198108	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
226053	chr9	61185901	61186100	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-4036	NM_001113541	727905		NM_001113541	ENSG00000276581	SPATA31A5	FAM75A5	SPATA31 subfamily A member 5	protein-coding
28434	chr10	48363571	48363830	+	0	NA	intron (NM_001323302, intron 3 of 13)	intron (NM_001323302, intron 3 of 13)	-37912	NM_001278548	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
35337	chr11	1113051	1113780	+	0	NA	Intergenic	Intergenic	38540	NM_002457	4583		NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
184015	chr5	91269121	91269630	+	0	NA	Intergenic	MER21A|LTR|ERVL	45027	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
62443	chr13	99335651	99335950	+	0	NA	intron (NR_026644, intron 6 of 8)	L1ME3Cz|LINE|L1	-15620	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
166159	chr3	111596251	111596730	+	0	NA	intron (NR_134917, intron 5 of 14)	intron (NR_134917, intron 5 of 14)	-1144	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
188955	chr5	160505351	160505450	+	0	NA	Intergenic	Intergenic	20048	NR_029701	406938		NR_029701	ENSG00000283733	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
109704	chr19	1059501	1059700	+	0	NA	intron (NM_019112, intron 40 of 46)	AluY|SINE|Alu	-6359	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
141506	chr2	241150101	241151680	+	0	NA	promoter-TSS (NM_001252120)	promoter-TSS (NM_001252120)	423	NM_002712	5510		NM_002712	ENSG00000115685	PPP1R7	SDS22	protein phosphatase 1 regulatory subunit 7	protein-coding
117091	chr19	19143101	19143300	+	0	NA	Intergenic	AluJb|SINE|Alu	-4722	NM_001256766	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
157011	chr22	42524771	42524930	+	0	NA	Intergenic	Intergenic	-5054	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
207590	chr7	44960651	44960950	+	0	NA	Intergenic	Intergenic	18215	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
43356	chr11	76733901	76734200	+	0	NA	Intergenic	Intergenic	-12261	NR_024042	390226		NR_024042		GUCY2EP	GC-E|GCD|GUCY2E	guanylate cyclase 2E, pseudogene	pseudo
42836	chr11	73047971	73048330	+	0	NA	intron (NM_014824, intron 3 of 19)	intron (NM_014824, intron 3 of 19)	94168	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
216333	chr8	13192321	13192580	+	0	NA	intron (NM_182643, intron 5 of 17)	Arthur1C|DNA|hAT-Tip100	-59161	NM_006094	10395		NM_006094	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
72537	chr15	34330201	34330600	+	0	NA	intron (NM_133647, intron 1 of 24)	AluJb|SINE|Alu	6444	NM_133647	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
140603	chr2	233401871	233402230	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	13896	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
177223	chr4	108527551	108528050	+	0	NA	Intergenic	Intergenic	-29433	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
167749	chr3	132343021	132343280	+	0	NA	intron (NM_001099, intron 6 of 9)	intron (NM_001099, intron 6 of 9)	25743	NM_001134194	55		NM_001099	ENSG00000014257	ACP3	5'-NT|ACP-3|ACPP|TM-PAP	acid phosphatase 3	protein-coding
160321	chr3	27625871	27626030	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	96373	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
138295	chr2	203717271	203717450	+	0	NA	intron (NM_001243078, intron 1 of 2)	LTR33|LTR|ERVL	10721	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
77285	chr15	82261951	82263200	+	0	NA	promoter-TSS (NM_001008226)	promoter-TSS (NM_001008226)	-47	NM_001322845	79631		NM_024580	ENSG00000140598	EFL1	EFTUD1|FAM42A|HsT19294|RIA1|SDS2	elongation factor like GTPase 1	protein-coding
43405	chr11	77151871	77152830	+	0	NA	intron (NM_001369365, intron 5 of 49)	intron (NM_001369365, intron 5 of 49)	24104	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
43891	chr11	88363421	88363880	+	0	NA	Intergenic	MIRb|SINE|MIR	-25914	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
54506	chr12	92097651	92098130	+	0	NA	intron (NR_132341, intron 1 of 4)	AluSz|SINE|Alu	43823	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
178075	chr4	140100001	140100300	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-27865	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
212695	chr7	129771051	129772100	+	0	NA	Intergenic	Intergenic	-1083	NR_029614	406958		NR_029614	ENSG00000207990	MIR182	MIRN182|miRNA182|mir-182	microRNA 182	ncRNA
141887	chr20	818271	818430	+	0	NA	Intergenic	Intergenic	-15365	NM_001042353	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
39534	chr11	61101521	61102900	+	0	NA	promoter-TSS (NM_014207)	promoter-TSS (NM_014207)	-279	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
8394	chr1	40391151	40391250	+	0	NA	intron (NM_001198978, intron 1 of 9)	intron (NM_001198978, intron 1 of 9)	-2145	NM_001198979	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
209352	chr7	76268851	76269380	+	0	NA	intron (NM_001291831, intron 11 of 15)	intron (NM_001291831, intron 11 of 15)	-33558	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
125917	chr2	24974251	24974680	+	0	NA	intron (NR_034113, intron 1 of 2)	AluJb|SINE|Alu	2353	NR_034113	729723		NR_034113	ENSG00000224165	DNAJC27-AS1	-	DNAJC27 antisense RNA 1	ncRNA
220121	chr8	94641951	94642730	+	0	NA	intron (NM_001034915, intron 2 of 15)	CpG-27435	1166	NM_017697	54845		NM_017697	ENSG00000104413	ESRP1	DFNB109|RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding
43198	chr11	75417421	75418130	+	0	NA	intron (NM_001256802, intron 6 of 6)	intron (NM_001256802, intron 6 of 6)	12854	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
70221	chr14	100641751	100641850	+	0	NA	Intergenic	Intergenic	-15468	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
216039	chr8	9623021	9623300	+	0	NA	intron (NM_003747, intron 3 of 26)	MER44A|DNA|TcMar-Tigger	67248	NM_003747	8658		NM_003747	ENSG00000173273	TNKS	ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5	tankyrase	protein-coding
25272	chr10	6134671	6135580	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-9796	NR_136554	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
226359	chr9	69919451	69919830	+	0	NA	Intergenic	Intergenic	98823	NR_131756	138255		NM_001010940	ENSG00000204711	CFAP95	C9orf135	cilia and flagella associated protein 95	protein-coding
148817	chr21	8376051	8376450	+	0	NA	intron (NR_003287, intron 2 of 2)	intron (NR_003287, intron 2 of 2)	-4415	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
66327	chr14	61425971	61426430	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	104757	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
204465	chr7	4686771	4687250	+	0	NA	intron (NM_001037165, intron 1 of 8)	AluY|SINE|Alu	4715	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
205063	chr7	6607821	6608250	+	0	NA	exon (NM_024067, exon 6 of 6)	exon (NM_024067, exon 6 of 6)	-7575	NM_017560	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
30411	chr10	78972021	78972730	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	95073	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
213543	chr7	139097501	139098230	+	0	NA	intron (NM_020119, intron 1 of 12)	L1ME1|LINE|L1	11855	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
31720	chr10	97681751	97682300	+	0	NA	intron (NM_021732, intron 1 of 2)	MER2|DNA|TcMar-Tigger	5216	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
122627	chr19	49815801	49816380	+	0	NA	Intergenic	AluY|SINE|Alu	-2199	NM_001378355	81857		NM_030973	ENSG00000104973	MED25	ACID1|ARC92|BVSYS|CMT2B2|P78|PTOV2|TCBAP0758	mediator complex subunit 25	protein-coding
71878	chr15	22458671	22459300	+	0	NA	Intergenic	Intergenic	-20959	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
8863	chr1	43448271	43448430	+	0	NA	promoter-TSS (NR_106793)	promoter-TSS (NR_106793)	-189	NR_106793	102465440		NR_106793	ENSG00000274975	MIR6735	hsa-mir-6735	microRNA 6735	ncRNA
69079	chr14	92037421	92037700	+	0	NA	intron (NM_004239, intron 1 of 20)	intron (NM_004239, intron 1 of 20)	2499	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
49385	chr12	22424221	22424850	+	0	NA	Intergenic	L1MEc|LINE|L1	-89821	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
183936	chr5	87409651	87410100	+	0	NA	intron (NM_001239, intron 2 of 8)	intron (NM_001239, intron 2 of 8)	3029	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
95083	chr17	33964401	33964600	+	0	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	192306	NM_001094	40		NM_001094	ENSG00000108684	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid sensing ion channel subunit 2	protein-coding
162576	chr3	48672351	48672650	+	0	NA	Intergenic	Intergenic	8732	NR_111921	102724368		NR_111921	ENSG00000228350	LINC02585	CELSR3-AS1	long intergenic non-protein coding RNA 2585	ncRNA
38892	chr11	47398471	47399130	+	0	NA	Intergenic	Intergenic	-2170	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
74146	chr15	55261621	55261880	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	8536	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
71171	chr14	105043571	105043730	+	0	NA	Intergenic	LTR40a|LTR|ERVL	21780	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
35906	chr11	2417801	2418000	+	0	NA	intron (NM_014555, intron 6 of 23)	intron (NM_014555, intron 6 of 23)	5145	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
75179	chr15	64717771	64718130	+	0	NA	Intergenic	Intergenic	-14669	NM_002537	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
134768	chr2	147298901	147299100	+	0	NA	Intergenic	Intergenic	-545517	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
27011	chr10	26829921	26830580	+	0	NA	intron (NR_145410, intron 1 of 11)	L1ME1|LINE|L1	30708	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
38923	chr11	47448371	47448730	+	0	NA	intron (NM_005055, intron 1 of 7)	intron (NM_005055, intron 1 of 7)	586	NM_005055	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
204572	chr7	5231851	5233500	+	0	NA	3' UTR (NM_001033518, exon 13 of 13)	3' UTR (NM_001033518, exon 13 of 13)	18406	NM_001033520	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
147237	chr20	57410971	57411330	+	0	NA	Intergenic	Intergenic	-18094	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
19786	chr1	182389551	182389880	+	0	NA	intron (NM_001033044, intron 1 of 6)	intron (NM_001033044, intron 1 of 6)	1689	NM_001033056	2752		NM_002065	ENSG00000135821	GLUL	DEE116|GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
197968	chr6	89992721	89992980	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	98381	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
7635	chr1	35565871	35566030	+	0	NA	3' UTR (NM_001014839, exon 8 of 8)	3' UTR (NM_001014839, exon 8 of 8)	-7364	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
172143	chr4	1196351	1196650	+	0	NA	non-coding (NR_024569, exon 4 of 4)	non-coding (NR_024569, exon 4 of 4)	12462	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
116932	chr19	18838501	18840250	+	0	NA	intron (NM_001297549, intron 1 of 23)	AluSx|SINE|Alu	7416	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
95276	chr17	35511751	35511850	+	0	NA	intron (NM_001363830, intron 2 of 4)	intron (NM_001363830, intron 2 of 4)	-24061	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
202338	chr6	157537251	157537550	+	0	NA	intron (NM_024630, intron 1 of 8)	intron (NM_024630, intron 1 of 8)	8268	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
94249	chr17	28684001	28685030	+	0	NA	intron (NM_003170, intron 17 of 36)	intron (NM_003170, intron 17 of 36)	22310	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
6809	chr1	30911021	30912080	+	0	NA	Intergenic	Intergenic	-2792	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
135611	chr2	168137751	168137850	+	0	NA	intron (NM_013233, intron 8 of 17)	(ATTTC)n|Simple_repeat|Simple_repeat	109795	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
179986	chr5	881551	883500	+	0	NA	intron (NM_001375861, intron 8 of 16)	intron (NM_001375861, intron 8 of 16)	9997	NR_134296								
128027	chr2	47179421	47179880	+	0	NA	Intergenic	AluJr|SINE|Alu	-2714	NM_001305625	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
529	chr1	1225621	1226250	+	0	NA	intron (NM_016547, intron 2 of 6)	intron (NM_016547, intron 2 of 6)	6066	NM_016176	51150		NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
106301	chr18	12863221	12863500	+	0	NA	intron (NM_080422, intron 1 of 9)	AluJr|SINE|Alu	20877	NM_002828	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
43502	chr11	78573401	78573600	+	0	NA	intron (NM_001243251, intron 1 of 13)	AluJo|SINE|Alu	1364	NM_024678	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
106034	chr18	8654471	8654930	+	0	NA	Intergenic	Intergenic	45255	NM_001025300	201475		NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding
51888	chr12	53508351	53509380	+	0	NA	intron (NR_159377, intron 12 of 14)	intron (NR_159377, intron 12 of 14)	-1381	NM_003717	8620		NM_003717	ENSG00000139574	NPFF	FMRFAL	neuropeptide FF-amide peptide precursor	protein-coding
80989	chr16	4016671	4017030	+	0	NA	intron (NM_001116, intron 2 of 10)	L1MB7|LINE|L1	-66406	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
197892	chr6	89344401	89344600	+	0	NA	intron (NM_016021, intron 1 of 7)	L2c|LINE|L2	8222	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
186460	chr5	137753801	137755380	+	0	NA	promoter-TSS (NM_006805)	promoter-TSS (NM_006805)	-227	NM_006805	10949		NM_006805	ENSG00000177733	HNRNPA0	HNRPA0	heterogeneous nuclear ribonucleoprotein A0	protein-coding
34658	chr10	133336501	133337950	+	0	NA	promoter-TSS (NM_001321617)	promoter-TSS (NM_001321617)	-329	NM_001321617	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
163196	chr3	50221971	50222130	+	0	NA	TTS (NM_006841)	TTS (NM_006841)	-5018	NM_001282620	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
15017	chr1	148279851	148282280	+	0	NA	Intergenic	Intergenic	-33994	NR_120331	101927468		NR_120331	ENSG00000227733	LOC101927468	-	uncharacterized LOC101927468	ncRNA
8466	chr1	40782151	40782450	+	0	NA	Intergenic	Intergenic	-1487	NM_004700	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
8381	chr1	40379101	40379300	+	0	NA	intron (NM_001198978, intron 1 of 9)	AluSq2|SINE|Alu	4567	NM_001198978	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
186791	chr5	139366001	139366600	+	0	NA	TTS (NM_005847)	TTS (NM_005847)	16997	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
108772	chr18	77140271	77141180	+	0	NA	Intergenic	L1MB3|LINE|L1	-7942	NM_001025101	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
122771	chr19	50155571	50155730	+	0	NA	intron (NM_001321449, intron 5 of 7)	L2a|LINE|L2	7631	NM_152358	126123		NM_152358	ENSG00000161652	IZUMO2	C19orf41|PLAL6978|PRO21961|SCRL	IZUMO family member 2	protein-coding
71711	chr15	20343621	20344380	+	0	NA	Intergenic	(AGCCAGCCA)n|Simple_repeat|Simple_repeat	61256	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
75719	chr15	68134801	68135000	+	0	NA	intron (NM_001320687, intron 3 of 14)	SVA_F|Retroposon|SVA	70432	NM_033429	91860		NM_033429	ENSG00000129007	CALML4	NY-BR-20	calmodulin like 4	protein-coding
80238	chr16	2197701	2198100	+	0	NA	Intergenic	Intergenic	-1295	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
22413	chr1	220043671	220043980	+	0	NA	intron (NM_004446, intron 1 of 31)	L1MC4|LINE|L1	2680	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
39255	chr11	57717171	57717330	+	0	NA	intron (NR_144933, intron 1 of 6)	SVA_D|Retroposon|SVA	4657	NM_015959	51075		NM_015959	ENSG00000213593	TMX2	CGI-31|NEDMCMS|PDIA12|PIG26|TXNDC14	thioredoxin related transmembrane protein 2	protein-coding
55189	chr12	101277551	101277850	+	0	NA	Intergenic	MIR|SINE|MIR	-2405	NM_014503	27340		NM_014503	ENSG00000120800	UTP20	1A6/DRIM|DRIM	UTP20 small subunit processome component	protein-coding
51181	chr12	50223451	50223830	+	0	NA	promoter-TSS (NM_001113547)	promoter-TSS (NM_001113547)	-982	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
238568	chrX	153820301	153820880	+	0	NA	intron (NM_032512, intron 1 of 7)	L1MC4|LINE|L1	9369	NM_001303516	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
223368	chr8	143877521	143877780	+	0	NA	intron (NM_031308, intron 1 of 1)	intron (NM_031308, intron 1 of 1)	817	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
37328	chr11	14823601	14823800	+	0	NA	intron (NM_001363569, intron 7 of 15)	L1PA13|LINE|L1	67971	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
56326	chr12	112848601	112849450	+	0	NA	intron (NM_001347955, intron 4 of 20)	intron (NM_001347955, intron 4 of 20)	57277	NM_001347954	22895		NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding
180009	chr5	1004451	1005230	+	0	NA	Intergenic	CpG	-3962	NM_033120	85409		NM_033120	ENSG00000145506	NKD2	Naked2	NKD inhibitor of WNT signaling pathway 2	protein-coding
69960	chr14	99718651	99718750	+	0	NA	intron (NM_006668, intron 10 of 14)	intron (NM_006668, intron 10 of 14)	-19022	NM_001375411	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
70420	chr14	102023321	102023980	+	0	NA	intron (NM_001376, intron 43 of 77)	AluSz|SINE|Alu	59077	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
112973	chr19	7863971	7864500	+	0	NA	3' UTR (NM_001159944, exon 20 of 20)	3' UTR (NM_001159944, exon 20 of 20)	10155	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
139360	chr2	220687301	220687580	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-780875	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
219631	chr8	80143401	80143600	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	27621	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
57275	chr12	121631151	121631250	+	0	NA	intron (NM_032790, intron 2 of 2)	intron (NM_032790, intron 2 of 2)	4650	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
30210	chr10	74847921	74848180	+	0	NA	intron (NM_012330, intron 3 of 17).2	AluSq2|SINE|Alu	21450	NM_001370137	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
195449	chr6	36979201	36980630	+	0	NA	intron (NM_001271641, intron 2 of 11)	intron (NM_001271641, intron 2 of 11)	6281	NM_001271641	23787		NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
132921	chr2	111423971	111425330	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	70511	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
89147	chr16	88521051	88521550	+	0	NA	intron (NM_153813, intron 4 of 9)	intron (NM_153813, intron 4 of 9)	9753	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
15834	chr1	151343971	151344130	+	0	NA	intron (NM_001379412, intron 8 of 10)	intron (NM_001379412, intron 8 of 10)	2806	NM_001379416	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
82395	chr16	16150151	16150250	+	0	NA	exon (NM_001171, exon 31 of 31)	exon (NM_001171, exon 31 of 31)	73271	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
218095	chr8	38964951	38965600	+	0	NA	intron (NM_021623, intron 10 of 11)	intron (NM_021623, intron 10 of 11)	-8953	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
84089	chr16	29613201	29615530	+	0	NA	promoter-TSS (NR_135317)	promoter-TSS (NR_135317)	-648	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
172675	chr4	2737371	2737730	+	0	NA	Intergenic	AluYm1|SINE|Alu	18786	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
176128	chr4	83103721	83103980	+	0	NA	intron (NM_016619, intron 3 of 4)	AluSx1|SINE|Alu	6039	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
231672	chr9	131678401	131679430	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-27512	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
228224	chr9	97903951	97904050	+	0	NA	TTS (NM_016481)	TTS (NM_016481)	18181	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
69995	chr14	100056871	100057550	+	0	NA	intron (NM_001330221, intron 1 of 13)	intron (NM_001330221, intron 1 of 13)	-8212	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
229934	chr9	126642021	126642480	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	28322	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
49418	chr12	22686871	22687030	+	0	NA	3' UTR (NM_018638, exon 8 of 8)	3' UTR (NM_018638, exon 8 of 8)	61779	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
221349	chr8	123239771	123239930	+	0	NA	intron (NM_001204180, intron 2 of 5)	AluSp|SINE|Alu	1527	NM_032847	84933		NM_032847	ENSG00000189376	C8orf76	-	chromosome 8 open reading frame 76	protein-coding
206237	chr7	29106351	29106650	+	0	NA	intron (NM_001371268, intron 3 of 9)	LTR41B|LTR|ERVL	-18533	NR_120523	1124		NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
192847	chr6	27158971	27159230	+	0	NA	Intergenic	AluSx|SINE|Alu	11474	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
64507	chr14	24365601	24366080	+	0	NA	Intergenic	Intergenic	-1071	NM_001320043	4776		NM_004554	ENSG00000100968	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T cells 4	protein-coding
136239	chr2	174605401	174605980	+	0	NA	intron (NM_001077269, intron 1 of 7)	L1MC5|LINE|L1	-7459	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
85243	chr16	48352601	48352880	+	0	NA	3' UTR (NM_001300948, exon 14 of 14)	3' UTR (NM_001300948, exon 14 of 14)	13147	NM_001006610	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
38501	chr11	45879771	45880130	+	0	NA	intron (NM_021117, intron 11 of 11)	MLT1B|LTR|ERVL-MaLR	-5701	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
190529	chr5	180647501	180647700	+	0	NA	intron (NM_001354989, intron 1 of 29)	intron (NM_001354989, intron 1 of 29)	2000	NM_001354989	2324		NM_002020	ENSG00000037280	FLT4	CHTD7|FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3	fms related receptor tyrosine kinase 4	protein-coding
205781	chr7	23570551	23571100	+	0	NA	Intergenic	L1M1|LINE|L1	15702	NR_002711	1197		NR_002711		CLK2P1	CLK2P	CDC like kinase 2, pseudogene 1	pseudo
743	chr1	1485501	1485700	+	0	NA	intron (NM_031921, intron 8 of 15)	intron (NM_031921, intron 8 of 15)	7751	NM_001317238	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
82360	chr16	15985151	15985450	+	0	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	35684	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
182005	chr5	55309621	55309880	+	0	NA	intron (NM_015360, intron 1 of 26)	intron (NM_015360, intron 1 of 26)	1761	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
24464	chr1	243947071	243947380	+	0	NA	intron (NR_033883, intron 1 of 11)	intron (NR_033883, intron 1 of 11)	29823	NR_033883	339529		NR_033883	ENSG00000226828	LINC02774	-	long intergenic non-protein coding RNA 2774	ncRNA
194870	chr6	34576221	34576480	+	0	NA	Intergenic	Intergenic	-20017	NM_001252294	25803		NM_012391	ENSG00000124664	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding
29895	chr10	73109021	73109650	+	0	NA	Intergenic	LTR12|LTR|ERV1	-1040	NM_001283017	25961		NM_015901	ENSG00000166321	NUDT13	-	nudix hydrolase 13	protein-coding
29401	chr10	70149401	70150100	+	0	NA	3' UTR (NM_020150, exon 7 of 7)	3' UTR (NM_020150, exon 7 of 7)	-3050	NM_001040273	219743		NM_173555	ENSG00000156521	TYSND1	NET41	trypsin like peroxisomal matrix peptidase 1	protein-coding
61369	chr13	51420921	51421630	+	0	NA	5' UTR (NM_001306091, exon 6 of 20)	5' UTR (NM_001306091, exon 6 of 20)	31761	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
65361	chr14	50524201	50524980	+	0	NA	intron (NM_198794, intron 2 of 31)	L2c|LINE|L2	7979	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
161092	chr3	38141401	38141600	+	0	NA	non-coding (NR_164663, exon 5 of 5)	non-coding (NR_164663, exon 5 of 5)	1749	NR_164663	4615		NM_002468	ENSG00000172936	MYD88	IMD68|MYD88D|WM1	MYD88 innate immune signal transduction adaptor	protein-coding
33286	chr10	114547301	114547900	+	0	NA	intron (NM_001322883, intron 5 of 20)	intron (NM_001322883, intron 5 of 20)	-20687	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
194345	chr6	32873671	32873830	+	0	NA	Intergenic	L1MD1|LINE|L1	19558	NM_002800	5698		NM_002800	ENSG00000240065	PSMB9	LMP2|PRAAS3|PRAAS6|PSMB6i|RING12|beta1i	proteasome 20S subunit beta 9	protein-coding
79735	chr16	1332671	1332830	+	0	NA	promoter-TSS (NM_001286464)	promoter-TSS (NM_001286464)	-895	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
37964	chr11	34651571	34651730	+	0	NA	intron (NM_001378054, intron 5 of 7)	intron (NM_001378054, intron 5 of 7)	9278	NM_001378046	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
180303	chr5	5421071	5421500	+	0	NA	Intergenic	Intergenic	-1392	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
170679	chr3	187743601	187744280	+	0	NA	intron (NM_001706, intron 1 of 9)	CpG	1528	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
72952	chr15	40453701	40455000	+	0	NA	intron (NR_125372, intron 1 of 4)	intron (NR_125372, intron 1 of 4)	13397	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
33073	chr10	110887851	110887950	+	0	NA	intron (NM_145341, intron 7 of 12)	intron (NM_145341, intron 7 of 12)	-10190	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
148305	chr20	63732851	63732950	+	0	NA	intron (NM_181485, intron 2 of 6)	(GT)n|Simple_repeat|Simple_repeat	-2801	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
153479	chr22	25772921	25773330	+	0	NA	intron (NM_001318245, intron 7 of 43)	intron (NM_001318245, intron 7 of 43)	30937	NM_001318245	84700		NM_032608	ENSG00000133454	MYO18B	KFS4	myosin XVIIIB	protein-coding
86517	chr16	67149871	67151330	+	0	NA	5' UTR (NM_033309, exon 2 of 2)	5' UTR (NM_033309, exon 2 of 2)	398	NM_033309	84752		NM_033309	ENSG00000237172	B3GNT9	-	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding
7076	chr1	32021521	32021980	+	0	NA	intron (NR_073498, intron 1 of 8)	AluSx|SINE|Alu	7882	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
161149	chr3	39048971	39049130	+	0	NA	intron (NR_164473, intron 1 of 2)	MLT1G1|LTR|ERVL-MaLR	2894	NR_164473	11280		NM_014139	ENSG00000168356	SCN11A	FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2	sodium voltage-gated channel alpha subunit 11	protein-coding
105115	chr17	82213401	82214300	+	0	NA	Intergenic	L2a|LINE|L2	-1008	NM_001367828	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
29860	chr10	72363301	72363500	+	0	NA	Intergenic	L2c|LINE|L2	-8481	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
221043	chr8	116750471	116750630	+	0	NA	intron (NM_003756, intron 1 of 7)	AluY|SINE|Alu	5273	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
116497	chr19	18131751	18132200	+	0	NA	exon (NM_015016, exon 14 of 27)	exon (NM_015016, exon 14 of 27)	-21188	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
149694	chr21	33949501	33950650	+	0	NA	intron (NR_038883, intron 2 of 2)	intron (NR_038883, intron 2 of 2)	18861	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
237291	chrX	114836151	114836430	+	0	NA	intron (NM_001256760, intron 5 of 6)	L1PA2|LINE|L1	12836	NR_029955	554212		NR_029955	ENSG00000199001	MIR448	MIRN448|hsa-mir-448|miRNA448	microRNA 448	ncRNA
156417	chr22	41200501	41200700	+	0	NA	Intergenic	AluSg7|SINE|Alu	-3099	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
129910	chr2	73257821	73258430	+	0	NA	3' UTR (NM_001080410, exon 17 of 17)	3' UTR (NM_001080410, exon 17 of 17)	23817	NM_006429	10574		NM_006429	ENSG00000135624	CCT7	CCTETA|CCTH|NIP7-1|TCP1ETA	chaperonin containing TCP1 subunit 7	protein-coding
100793	chr17	64024151	64024450	+	0	NA	Intergenic	Intergenic	-3666	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
67041	chr14	67642251	67642880	+	0	NA	intron (NM_001172, intron 3 of 7)	intron (NM_001172, intron 3 of 7)	22645	NM_001172	384		NM_001172	ENSG00000081181	ARG2	-	arginase 2	protein-coding
229078	chr9	114358021	114358600	+	0	NA	intron (NM_001317952, intron 10 of 20)	MIRb|SINE|MIR	28441	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
192525	chr6	25040001	25040280	+	0	NA	intron (NM_001286446, intron 1 of 13)	AluSq2|SINE|Alu	2148	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
128249	chr2	54559931	54561130	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	2136	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
133070	chr2	112426621	112426980	+	0	NA	intron (NM_005054, intron 1 of 22).3	intron (NM_005054, intron 1 of 22).3	6814	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
106978	chr18	32017551	32019200	+	0	NA	promoter-TSS (NM_017831)	promoter-TSS (NM_017831)	-450	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
212372	chr7	127792551	127792930	+	0	NA	intron (NM_014390, intron 10 of 23)	LTR50|LTR|ERVL	140546	NM_014390	27044		NM_014390	ENSG00000197157	SND1	TDRD11|TSN|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
10687	chr1	74196621	74196980	+	0	NA	intron (NM_001105659, intron 1 of 7)	L2|LINE|L2	1376	NM_001322315	127255		NM_145258	ENSG00000162620	LRRIQ3	LRRC44	leucine rich repeats and IQ motif containing 3	protein-coding
156591	chr22	41532921	41533800	+	0	NA	intron (NM_138338, intron 3 of 6)	intron (NM_138338, intron 3 of 6)	11110	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
116511	chr19	18156551	18156650	+	0	NA	intron (NR_162071, intron 2 of 14)	intron (NR_162071, intron 2 of 14)	3437	NR_162071	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
233918	chrX	1680221	1680680	+	0	NA	Intergenic	MER68|LTR|ERVL	65317	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
206010	chr7	26285051	26285350	+	0	NA	Intergenic	Intergenic	-6662	NM_013322	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
23381	chr1	228176801	228177480	+	0	NA	3' UTR (NM_001010867, exon 3 of 3)	3' UTR (NM_001010867, exon 3 of 3)	2570	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
57622	chr12	122502821	122503080	+	0	NA	TTS (NM_023012)	TTS (NM_023012)	-2018	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
173290	chr4	7067301	7068930	+	0	NA	promoter-TSS (NM_025196)	promoter-TSS (NM_025196)	-51	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
219709	chr8	80998251	80998700	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	113593	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
121324	chr19	46773851	46773950	+	0	NA	TTS (NM_001145145)	TTS (NM_001145145)	10914	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
214538	chr7	150518951	150519330	+	0	NA	intron (NM_153236, intron 1 of 1)	L1MC5|LINE|L1	4268	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
203523	chr7	768071	768430	+	0	NA	intron (NR_075098, intron 8 of 12)	CpG	-40574	NM_001164758	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
116836	chr19	18577751	18577850	+	0	NA	TTS (NM_001033930)	TTS (NM_001033930)	4960	NM_001321021	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
115364	chr19	15229401	15229600	+	0	NA	intron (NM_024794, intron 4 of 6)	AluSz|SINE|Alu	2948	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
17236	chr1	156296551	156297080	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1126	NM_001256605	112770		NM_144580	ENSG00000198715	GLMP	C1orf85|NCU-G1|lnc-UCID	glycosylated lysosomal membrane protein	protein-coding
54352	chr12	89696701	89696900	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	12038	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
100694	chr17	63829971	63830130	+	0	NA	intron (NM_001199163, intron 4 of 11)	intron (NM_001199163, intron 4 of 11)	2366	NM_001199163	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
25124	chr10	4034851	4035600	+	0	NA	Intergenic	Intergenic	-16501	NR_120632								
16433	chr1	154569871	154570230	+	0	NA	intron (NM_000748, intron 3 of 5)	MIRb|SINE|MIR	2272	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
163168	chr3	50171671	50172230	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	12931	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
149793	chr21	34937351	34937650	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-48801	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
159463	chr3	14132951	14133050	+	0	NA	intron (NM_024334, intron 6 of 11)	MIRb|SINE|MIR	7948	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
226425	chr9	70602421	70602700	+	0	NA	intron (NM_206947, intron 19 of 24)	intron (NM_206947, intron 19 of 24)	-187903	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
146590	chr20	50111401	50111900	+	0	NA	intron (NM_001282576, intron 1 of 4)	intron (NM_001282576, intron 1 of 4)	1500	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
183832	chr5	86616671	86616830	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-1191	NM_001867	1350		NM_001867	ENSG00000127184	COX7C	-	cytochrome c oxidase subunit 7C	protein-coding
162451	chr3	48469851	48470730	+	0	NA	intron (NM_016479, intron 3 of 5)	L2b|LINE|L2	2868	NM_001272082	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
223396	chr8	143920421	143921130	+	0	NA	exon (NM_000445, exon 33 of 33)	exon (NM_000445, exon 33 of 33)	18822	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
238596	chrX	153908101	153908980	+	0	NA	intron (NM_001164741, intron 22 of 22)	intron (NM_001164741, intron 22 of 22)	3826	NM_001146151	554		NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|NDI1|V2R	arginine vasopressin receptor 2	protein-coding
127820	chr2	44937621	44938250	+	0	NA	intron (NR_147194, intron 1 of 2)	CpG	953	NR_147194	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
78219	chr15	90644351	90644650	+	0	NA	3' UTR (NM_022769, exon 15 of 15)	3' UTR (NM_022769, exon 15 of 15)	-15734	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
136167	chr2	174392001	174392300	+	0	NA	intron (NM_004882, intron 1 of 9)	AluSx1|SINE|Alu	3562	NM_004882	9541		NM_004882	ENSG00000138433	CIR1	CIR	corepressor interacting with RBPJ, CIR1	protein-coding
206169	chr7	28062171	28062480	+	0	NA	intron (NM_175061, intron 1 of 4)	LTR41B|LTR|ERVL	-118132	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
148667	chr21	6126501	6126730	+	0	NA	Intergenic	Intergenic	15484	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
221376	chr8	123389401	123389800	+	0	NA	intron (NM_014109, intron 1 of 27)	AluY|SINE|Alu	6847	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
165359	chr3	89785551	89785750	+	0	NA	Intergenic	AluYa5|SINE|Alu	678029	NM_005233	2042		NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
199628	chr6	119856121	119856550	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-158844	NR_036098	100422951		NR_036098	ENSG00000265725	MIR3144	mir-3144	microRNA 3144	ncRNA
20105	chr1	189223721	189223800	+	0	NA	Intergenic	L1M3|LINE|L1	1252250	NM_001317188	339479		NM_199051	ENSG00000162670	BRINP3	DBCCR1L|DBCCR1L1|FAM5C	BMP/retinoic acid inducible neural specific 3	protein-coding
56096	chr12	110699251	110699350	+	0	NA	Intergenic	Intergenic	-9523	NM_001256413	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
82025	chr16	12027251	12027350	+	0	NA	intron (NM_032167, intron 3 of 20)	intron (NM_032167, intron 3 of 20)	50566	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
215133	chr7	155381971	155382630	+	0	NA	non-coding (NR_147174, exon 1 of 3)	non-coding (NR_147174, exon 1 of 3)	224	NR_147174	100286906		NR_147174		LINC03010	-	long intergenic non-protein coding RNA 3010	ncRNA
143748	chr20	32367171	32367330	+	0	NA	intron (NM_001164603, intron 2 of 3)	AluSz|SINE|Alu	8185	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
72617	chr15	37558021	37558100	+	0	NA	Intergenic	L1PA13|LINE|L1	-376547	NM_152453	145942		NM_152453	ENSG00000166069	TMCO5A	TMCO5	transmembrane and coiled-coil domains 5A	protein-coding
95548	chr17	36703821	36704380	+	0	NA	Intergenic	CpG	102517	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
52465	chr12	55955221	55955550	+	0	NA	intron (NM_001200054, intron 9 of 10)	intron (NM_001200054, intron 9 of 10)	10657	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
175757	chr4	77760671	77760850	+	0	NA	intron (NM_144571, intron 4 of 11)	AluY|SINE|Alu	58304	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
98116	chr17	45775251	45775350	+	0	NA	intron (NM_001303016, intron 3 of 12)	intron (NM_001303016, intron 3 of 12)	-8980	NM_001303020	1394		NM_004382	ENSG00000120088	CRHR1	CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRHR|CRHR1L	corticotropin releasing hormone receptor 1	protein-coding
130388	chr2	85313401	85313930	+	0	NA	Intergenic	Intergenic	14324	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
124775	chr2	7403071	7403630	+	0	NA	Intergenic	Intergenic	-17911	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
38429	chr11	45102571	45103390	+	0	NA	intron (NM_001359633, intron 2 of 7)	intron (NM_001359633, intron 2 of 7)	8821	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
20498	chr1	198651821	198653030	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	13385	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
67610	chr14	72715151	72716050	+	0	NA	intron (NM_001280544, intron 5 of 9)	intron (NM_001280544, intron 5 of 9)	177049	NM_001280544	8110		NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4|SMARCG3	double PHD fingers 3	protein-coding
204888	chr7	6056151	6057150	+	0	NA	intron (NM_014413, intron 1 of 14)	intron (NM_014413, intron 1 of 14)	2525	NM_014413	27102		NM_014413	ENSG00000086232	EIF2AK1	HCR|HRI|LEMSPAD|hHRI	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
171270	chr3	195872121	195872380	+	0	NA	intron (NM_005781, intron 10 of 14)	CpG	10145	NR_106887	102465977		NR_106887	ENSG00000276489	MIR6829	hsa-mir-6829	microRNA 6829	ncRNA
41247	chr11	65791671	65792650	+	0	NA	intron (NM_004561, intron 1 of 3)	intron (NM_004561, intron 1 of 3)	-1292	NR_108085	101927828		NR_108085	ENSG00000255120	OVOL1-AS1	-	OVOL1 antisense RNA 1	ncRNA
229162	chr9	114500521	114501350	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	2280	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
106586	chr18	22170411	22171450	+	0	NA	intron (NM_005257, intron 1 of 6)	CpG-12421	1341	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
195476	chr6	37071671	37072080	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	66220	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
3372	chr1	15681871	15682430	+	0	NA	Intergenic	AluJo|SINE|Alu	-2170	NM_015164	23207		NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology and RUN domain containing M2	protein-coding
59584	chr13	27472771	27473330	+	0	NA	Intergenic	Intergenic	-22448	NM_001166263	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
131090	chr2	89328951	89329050	+	0	NA	Intergenic	Intergenic	256665	NR_160761	107985911		NR_160761	ENSG00000290846	LOC107985911	-	lymphocyte specific protein 1 pseudogene	pseudo
52490	chr12	56004771	56005330	+	0	NA	3' UTR (NM_000456, exon 6 of 6)	3' UTR (NM_000456, exon 6 of 6)	-2454	NM_001351091	64375		NM_022465	ENSG00000123411	IKZF4	EOS|ZNFN1A4	IKAROS family zinc finger 4	protein-coding
150107	chr21	37451921	37452580	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	31951	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
88743	chr16	86464201	86464400	+	0	NA	Intergenic	(GTGATG)n|Simple_repeat|Simple_repeat	44560	NR_033925	400550		NR_033925	ENSG00000268388	FENDRR	FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21	FOXF1 adjacent non-coding developmental regulatory RNA	ncRNA
19761	chr1	182031371	182031530	+	0	NA	Intergenic	Intergenic	30262	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
4754	chr1	23498371	23498530	+	0	NA	Intergenic	Intergenic	-14271	NM_017707	55616		NM_017707	ENSG00000088280	ASAP3	ACAP4|CENTB6|DDEFL1|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding
14704	chr1	145926871	145929130	+	0	NA	promoter-TSS (NM_005105)	promoter-TSS (NM_005105)	-516	NM_005105	9939		NM_005105	ENSG00000265241	RBM8A	BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1	RNA binding motif protein 8A	protein-coding
151499	chr21	46359421	46359680	+	0	NA	intron (NM_006031, intron 13 of 46)	AluSg|SINE|Alu	34883	NM_001315529	5116		NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
90533	chr17	1483751	1484050	+	0	NA	intron (NM_001080779, intron 2 of 31)	AluSp|SINE|Alu	1501	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
111419	chr19	3780301	3780550	+	0	NA	intron (NM_139355, intron 8 of 13)	AluY|SINE|Alu	5956	NM_139355	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
28112	chr10	43401771	43401930	+	0	NA	intron (NM_001098204, intron 1 of 3)	intron (NM_001098204, intron 1 of 3)	-4504	NM_001098207	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
141769	chr2	242029971	242030450	+	0	NA	intron (NR_110220, intron 3 of 3)	intron (NR_110220, intron 3 of 3)	29001	NR_149023	285097		NM_178530	ENSG00000280119	LOC285097	-	uncharacterized FLJ38379	ncRNA
139113	chr2	218960501	218961080	+	0	NA	exon (NM_003936, exon 1 of 1)	exon (NM_003936, exon 1 of 1)	1124	NM_003936	8941		NM_003936	ENSG00000171450	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin dependent kinase 5 regulatory subunit 2	protein-coding
223431	chr8	143957571	143957730	+	0	NA	intron (NM_000445, intron 2 of 32)	(CCCAGG)n|Simple_repeat|Simple_repeat	-3816	NM_201379	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
36442	chr11	5596251	5596750	+	0	NA	promoter-TSS (NM_001003818)	promoter-TSS (NM_001003818)	-137	NM_001198644	117854		NM_058166	ENSG00000121236	TRIM6	RNF89	tripartite motif containing 6	protein-coding
142106	chr20	2655551	2655650	+	0	NA	promoter-TSS (NR_004399)	promoter-TSS (NR_004399)	-497	NR_004399	692201		NR_004399	ENSG00000212498	SNORD86	U86	small nucleolar RNA, C/D box 86	snoRNA
197725	chr6	87079071	87079330	+	0	NA	Intergenic	Charlie17b|DNA|hAT-Charlie	15906	NM_001252383	1081		NM_000735	ENSG00000135346	CGA	CG-ALPHA|FSHA|GPA1|GPHA1|GPHa|HCG|LHA|TSHA	glycoprotein hormones, alpha polypeptide	protein-coding
81940	chr16	11793471	11794150	+	0	NA	intron (NM_014153, intron 1 of 22)	intron (NM_014153, intron 1 of 22)	3448	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
216206	chr8	11870671	11871050	+	0	NA	Intergenic	L2a|LINE|L2	-2773	NM_001384723	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
174671	chr4	41865401	41865600	+	0	NA	Intergenic	CpG	17111	NR_104143	101927074		NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA
37098	chr11	13275271	13275950	+	0	NA	Intergenic	CR1-3_Croc|LINE|CR1	-1042	NM_001351804	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
163072	chr3	49955571	49956130	+	0	NA	intron (NR_146071, intron 1 of 15)	(CT)n|Simple_repeat|Simple_repeat	15700	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
22849	chr1	225463571	225463930	+	0	NA	Intergenic	L2b|LINE|L2	-34895	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
209184	chr7	75398901	75399900	+	0	NA	intron (NM_001317815, intron 2 of 4).2	intron (NM_001317815, intron 2 of 4).2	1258	NM_001317815	378108		NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
118489	chr19	35931291	35932230	+	0	NA	Intergenic	CpG	-4614	NM_024509	79414		NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
134925	chr2	151287771	151288700	+	0	NA	intron (NM_004688, intron 1 of 7)	MLT1D|LTR|ERVL-MaLR	1433	NM_004688	9111		NM_004688	ENSG00000123609	NMI	-	N-myc and STAT interactor	protein-coding
61167	chr13	49099201	49099400	+	0	NA	intron (NM_001079673, intron 3 of 25)	BLACKJACK|DNA|hAT-Blackjack	-11017	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
230218	chr9	127853521	127854030	+	0	NA	intron (NM_001114753, intron 1 of 14)	MIR3|SINE|MIR	883	NM_001114753	2022		NM_000118	ENSG00000106991	ENG	END|HHT1|ORW1	endoglin	protein-coding
188611	chr5	157195771	157196400	+	0	NA	intron (NM_005546, intron 1 of 16)	MER20|DNA|hAT-Charlie	15245	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
57755	chr12	122973821	122976230	+	0	NA	promoter-TSS (NM_001304833)	promoter-TSS (NM_001304833)	-178	NM_001304833	79676		NM_024623	ENSG00000111325	OGFOD2	-	2-oxoglutarate and iron dependent oxygenase domain containing 2	protein-coding
44454	chr11	104934321	104934900	+	0	NA	Intergenic	L1PA11|LINE|L1	-16435	NR_034078	643733		NR_034078	ENSG00000291173	CASP4LP	CASP17P	caspase 4 like, pseudogene	pseudo
194521	chr6	33300871	33301230	+	0	NA	3' UTR (NM_003190, exon 8 of 8).3	3' UTR (NM_003190, exon 8 of 8).3	-1662	NM_001243738	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
233692	chrX	1184151	1184850	+	0	NA	Intergenic	AluSx1|SINE|Alu	28149	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
119265	chr19	39516271	39516650	+	0	NA	intron (NR_146916, intron 1 of 3)	(TC)n|Simple_repeat|Simple_repeat	1037	NR_146916	348303		NM_182704	ENSG00000186838	SELENOV	SELV	selenoprotein V	protein-coding
91606	chr17	5328521	5328780	+	0	NA	intron (NM_001083585, intron 2 of 16)	AluJb|SINE|Alu	46366	NM_001083585	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
215716	chr8	1670221	1670900	+	0	NA	intron (NM_001346810, intron 10 of 14)	L2a|LINE|L2	-48896	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
48802	chr12	11998501	11999450	+	0	NA	Intergenic	Intergenic	-50886	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
62949	chr13	112065771	112065930	+	0	NA	intron (NR_120392, intron 1 of 3)	intron (NR_120392, intron 1 of 3)	-1299	NM_005986	6656		NM_005986	ENSG00000182968	SOX1	-	SRY-box transcription factor 1	protein-coding
170990	chr3	194640801	194641430	+	0	NA	3' UTR (NM_018385, exon 14 of 14)	3' UTR (NM_018385, exon 14 of 14)	-7696	NM_138399	93109		NM_138399	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
45996	chr11	121515551	121515650	+	0	NA	intron (NM_003105, intron 8 of 47)	L2a|LINE|L2	-33811	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
174358	chr4	38804171	38805050	+	0	NA	intron (NM_003263, intron 1 of 3)	intron (NM_003263, intron 1 of 3)	181	NM_003263	7096		NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll like receptor 1	protein-coding
49850	chr12	32896551	32897080	+	0	NA	promoter-TSS (NM_001005242)	promoter-TSS (NM_001005242)	-38	NM_001005242	5318		NM_004572	ENSG00000057294	PKP2	ARVD9	plakophilin 2	protein-coding
181681	chr5	50489351	50489750	+	0	NA	Intergenic	L1PA3|LINE|L1	-48262	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
192341	chr6	24356351	24356680	+	0	NA	promoter-TSS (NM_181337)	promoter-TSS (NM_181337)	-388	NM_181337	353219		NM_181337	ENSG00000146049	KAAG1	RU2AS	kidney associated DCDC2 antisense RNA 1	ncRNA
47713	chr12	6451251	6452600	+	0	NA	promoter-TSS (NM_018009)	promoter-TSS (NM_018009)	-117	NR_147128	55080		NM_018009	ENSG00000139192	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein like	protein-coding
184001	chr5	90569251	90569350	+	0	NA	intron (NR_003149, intron 1 of 89)	MSTD|LTR|ERVL-MaLR	10503	NM_032119	84059		NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
89349	chr16	88761701	88762300	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	19233	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
8851	chr1	43365601	43365800	+	0	NA	promoter-TSS (NR_106792)	promoter-TSS (NR_106792)	-985	NR_106792	102466723		NR_106792	ENSG00000283836	MIR6734	hsa-mir-6734	microRNA 6734	ncRNA
184334	chr5	96946051	96946350	+	0	NA	intron (NM_005575, intron 1 of 17)	intron (NM_005575, intron 1 of 17)	10120	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
157005	chr22	42517551	42518030	+	0	NA	intron (NM_015703, intron 2 of 6)	AluSx|SINE|Alu	2006	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
128276	chr2	54587401	54587900	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	29256	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
44232	chr11	96393751	96394100	+	0	NA	TTS (NM_003772)	TTS (NM_003772)	3912	NM_001261833	8690		NM_003772	ENSG00000183340	JRKL	HHMJG	JRK like	protein-coding
141835	chr20	431321	432180	+	0	NA	non-coding (NR_136659, exon 12 of 12)	non-coding (NR_136659, exon 12 of 12)	23451	NR_136659	10616		NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RANBP2-type and C3HC4-type zinc finger containing 1	protein-coding
55387	chr12	104427271	104428000	+	0	NA	Intergenic	L1ME5|LINE|L1	-29313	NM_018413	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
40815	chr11	64922101	64922550	+	0	NA	Intergenic	AluJb|SINE|Alu	-2364	NM_006244	5526		NM_006244	ENSG00000068971	PPP2R5B	B56B|B56beta|PR61B	protein phosphatase 2 regulatory subunit B'beta	protein-coding
76744	chr15	76337401	76338930	+	0	NA	intron (NM_145805, intron 2 of 5)	CpG-8458	1392	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
92404	chr17	8373351	8373650	+	0	NA	intron (NM_001304947, intron 1 of 1)	SVA_B|Retroposon|SVA	-1960	NM_213597	124751		NM_213597	ENSG00000184619	KRBA2	-	KRAB-A domain containing 2	protein-coding
164455	chr3	59512151	59512250	+	0	NA	Intergenic	Intergenic	146297	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
33460	chr10	119052201	119052600	+	0	NA	intron (NM_003750, intron 14 of 21)	AluJb|SINE|Alu	7738	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
225159	chr9	33814871	33815100	+	0	NA	Intergenic	L1MC3|LINE|L1	-2175	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
161176	chr3	39124601	39124800	+	0	NA	intron (NR_159496, intron 9 of 28)	L1ME4b|LINE|L1	-13506	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
21602	chr1	206556491	206557530	+	0	NA	promoter-TSS (NM_182665)	promoter-TSS (NM_182665)	-154	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
139736	chr2	229834601	229835080	+	0	NA	3' UTR (NM_001348334, exon 7 of 7)	3' UTR (NM_001348334, exon 7 of 7)	86839	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
165053	chr3	71446301	71446700	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	95589	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
147285	chr20	57603501	57603700	+	0	NA	TTS (NR_136660)	TTS (NR_136660)	16826	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
73033	chr15	40806871	40808430	+	0	NA	promoter-TSS (NM_018163)	promoter-TSS (NM_018163)	-177	NM_018163	55192		NM_018163	ENSG00000104129	DNAJC17	-	DnaJ heat shock protein family (Hsp40) member C17	protein-coding
236809	chrX	79162801	79163300	+	0	NA	intron (NM_032553, intron 2 of 2)	intron (NM_032553, intron 2 of 2)	18362	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
106807	chr18	23968471	23968630	+	0	NA	Intergenic	Intergenic	-24337	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
153446	chr22	25110901	25111800	+	0	NA	intron (NR_038941, intron 2 of 4)	intron (NR_038941, intron 2 of 4)	1342	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
63237	chr13	113930601	113931550	+	0	NA	Intergenic	Intergenic	-2084	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
33108	chr10	111076051	111076600	+	0	NA	promoter-TSS (NM_000681)	promoter-TSS (NM_000681)	-704	NM_000681	150		NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|FPLD8|ZNF32	adrenoceptor alpha 2A	protein-coding
170646	chr3	187066501	187067300	+	0	NA	intron (NM_173216, intron 5 of 7)	intron (NM_173216, intron 5 of 7)	28182	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
127571	chr2	42575421	42575680	+	0	NA	intron (NM_001282755, intron 3 of 17)	L2a|LINE|L2	6918	NM_001330443	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
50853	chr12	49131201	49132700	+	0	NA	promoter-TSS (NM_006082)	promoter-TSS (NM_006082)	-555	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
39775	chr11	61917121	61918230	+	0	NA	promoter-TSS (NM_013401)	promoter-TSS (NM_013401)	-109	NM_013401	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
179578	chr4	185254351	185254850	+	0	NA	intron (NM_001378032, intron 2 of 19)	L2|LINE|L2	45043	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
29529	chr10	70871071	70871430	+	0	NA	intron (NM_003901, intron 10 of 14)	intron (NM_003901, intron 10 of 14)	16631	NM_001289797	5092		NM_000281	ENSG00000166228	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase 1	protein-coding
33801	chr10	123148821	123149080	+	0	NA	intron (NM_005519, intron 1 of 1)	CpG	828	NM_005519	3167		NM_005519	ENSG00000188816	HMX2	H6L|Nkx5-2	H6 family homeobox 2	protein-coding
33495	chr10	119120201	119120800	+	0	NA	intron (NM_207009, intron 5 of 8)	intron (NM_207009, intron 5 of 8)	16387	NM_001303111	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
169362	chr3	160413401	160414050	+	0	NA	intron (NM_005496, intron 7 of 22)	intron (NM_005496, intron 7 of 22)	8980	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
184280	chr5	96788451	96788750	+	0	NA	exon (NM_001040458, exon 11 of 19)	exon (NM_001040458, exon 11 of 19)	19345	NM_001040458	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
171543	chr3	196758051	196758900	+	0	NA	intron (NM_002577, intron 1 of 14)	intron (NM_002577, intron 1 of 14)	18618	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
39614	chr11	61394351	61394650	+	0	NA	intron (NM_016499, intron 3 of 4)	AluSc|SINE|Alu	1913	NM_001173990	51259		NM_016499	ENSG00000187049	TMEM216	HSPC244	transmembrane protein 216	protein-coding
78707	chr15	98169521	98169900	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-80957	NR_120325	101927332		NR_120325	ENSG00000259611	LINC01582	-	long intergenic non-protein coding RNA 1582	ncRNA
67935	chr14	74765421	74766580	+	0	NA	intron (NM_019589, intron 1 of 20)	intron (NM_019589, intron 1 of 20)	2684	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
238825	chrX	154435851	154435950	+	0	NA	3' UTR (NM_001183, exon 10 of 10)	3' UTR (NM_001183, exon 10 of 10)	-1254	NM_001493	2664		NM_001493	ENSG00000203879	GDI1	1A|GDIL|MRX41|MRX48|OPHN2|RABGD1A|RABGDIA|XAP-4|XLID41	GDP dissociation inhibitor 1	protein-coding
124498	chr19	58576901	58577280	+	0	NA	intron (NR_026052, intron 1 of 1)	AluSg|SINE|Alu	1691	NR_026052	65996		NM_023939	ENSG00000293115	CENPBD2P	CENPBD1P1	CENPB DNA-binding domains containing 2, pseudogene	pseudo
214729	chr7	151029521	151029780	+	0	NA	intron (NM_001282293, intron 1 of 14)	AluSx|SINE|Alu	1200	NM_007188	11194		NM_007188	ENSG00000197150	ABCB8	EST328128|M-ABC1|MABC1|MITOSUR	ATP binding cassette subfamily B member 8	protein-coding
163147	chr3	50147321	50148400	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-7198	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
195839	chr6	41374651	41374950	+	0	NA	Intergenic	CpG	39192	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
187984	chr5	149518621	149519000	+	0	NA	intron (NM_001025105, intron 4 of 10)	intron (NM_001025105, intron 4 of 10)	31555	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
18009	chr1	160557721	160558180	+	0	NA	intron (NM_001184882, intron 1 of 5)	L1PA11|LINE|L1	21546	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
215512	chr7	158704051	158705630	+	0	NA	promoter-TSS (NM_001281933)	promoter-TSS (NM_001281933)	-36	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
151477	chr21	46250321	46251150	+	0	NA	non-coding (NR_002776, exon 3 of 3)	non-coding (NR_002776, exon 3 of 3)	21504	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
95455	chr17	36173571	36173730	+	0	NA	intron (NM_001001417, intron 3 of 13).3	intron (NM_001001417, intron 3 of 13).3	2928	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
3721	chr1	16618721	16619180	+	0	NA	non-coding (NR_026752, exon 7 of 7)	non-coding (NR_026752, exon 7 of 7)	-5386	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
105754	chr18	2758671	2759350	+	0	NA	intron (NM_015295, intron 34 of 47)	L1ME3B|LINE|L1	-87996	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
132558	chr2	106314471	106314900	+	0	NA	Intergenic	Intergenic	-55060	NR_157576	402096		NR_157576		ANAPC1P6	-	ANAPC1 pseudogene 6	pseudo
85284	chr16	48604871	48605350	+	0	NA	intron (NM_153029, intron 1 of 6)	AluSp|SINE|Alu	5070	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
192437	chr6	24893071	24893850	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-16095	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
99729	chr17	50913371	50914230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-45822	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
7742	chr1	36151901	36152530	+	0	NA	intron (NM_001270895, intron 1 of 4)	intron (NM_001270895, intron 1 of 4)	-2701	NM_001270897	27095		NM_014408	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex subunit 3	protein-coding
24297	chr1	236545601	236546200	+	0	NA	intron (NM_201544, intron 9 of 9)	intron (NM_201544, intron 9 of 9)	-21392	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
29370	chr10	69801771	69801930	+	0	NA	promoter-TSS (NM_080802)	promoter-TSS (NM_080802)	-56	NM_080800	1305		NM_005203	ENSG00000197467	COL13A1	CMS19|COLXIIIA1	collagen type XIII alpha 1 chain	protein-coding
192896	chr6	27514721	27515280	+	0	NA	Intergenic	Intergenic	-41882	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
72450	chr15	32312971	32313650	+	0	NA	intron (NR_038253, intron 2 of 7)	CpG	29367	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
41589	chr11	66349421	66349880	+	0	NA	intron (NR_135761, intron 1 of 1)	AluSq2|SINE|Alu	1659	NR_135761	102724064		NR_135761	ENSG00000255468	B4GAT1-DT	-	B4GAT1 divergent transcript	ncRNA
31517	chr10	96748201	96748400	+	0	NA	Intergenic	Intergenic	-1966	NR_026712	728658		NR_026712	ENSG00000236552	RPL13AP5	RPL13A_8_1086|bA196N24.2	ribosomal protein L13a pseudogene 5	pseudo
45581	chr11	118879471	118880030	+	0	NA	Intergenic	Intergenic	-4142	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
65178	chr14	49604021	49604280	+	0	NA	intron (NR_037792, intron 3 of 5)	AluJb|SINE|Alu	5210	NM_152329	122769		NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
95937	chr17	38948001	38948630	+	0	NA	intron (NM_001008777, intron 6 of 10)	AluSx1|SINE|Alu	19088	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
17125	chr1	156170551	156170930	+	0	NA	intron (NM_001370567, intron 9 of 13)	AluY|SINE|Alu	16192	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
105903	chr18	3380521	3380980	+	0	NA	Intergenic	Intergenic	-30191	NR_146506	105371964		NR_146506	ENSG00000259256	LINC01895	-	long intergenic non-protein coding RNA 1895	ncRNA
139532	chr2	224581701	224582280	+	0	NA	intron (NM_003590, intron 1 of 15)	AluSq2|SINE|Alu	3373	NM_003590	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
10888	chr1	78623671	78624350	+	0	NA	intron (NM_001375650, intron 2 of 8)	AluSz|SINE|Alu	3562	NM_006820	10964		NM_006820	ENSG00000137959	IFI44L	C1orf29|GS3686|TLDC5B	interferon induced protein 44 like	protein-coding
108988	chr18	79690751	79691050	+	0	NA	intron (NM_001202504, intron 1 of 12)	intron (NM_001202504, intron 1 of 12)	9470	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
61879	chr13	77290971	77291530	+	0	NA	intron (NM_015057, intron 2 of 82)	L1ME2|LINE|L1	35844	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
65871	chr14	55074551	55076050	+	0	NA	Intergenic	Intergenic	23653	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
131523	chr2	96559701	96559900	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	21921	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
79078	chr16	170051	170380	+	0	NA	Intergenic	Intergenic	-2661	NM_000517	3040		NM_000517	ENSG00000188536	HBA2	ECYT7|HBA-T2|HBH	hemoglobin subunit alpha 2	protein-coding
199386	chr6	116278021	116278430	+	0	NA	3' UTR (NM_003309, exon 1 of 1)	3' UTR (NM_003309, exon 1 of 1)	1705	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
28951	chr10	63225051	63226380	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSq2|SINE|Alu	43508	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
208524	chr7	70336601	70336800	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	738225	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
68396	chr14	80946271	80946430	+	0	NA	Intergenic	(TGATGCCTCA)n|Simple_repeat|Simple_repeat	-4612	NM_152446	145508		NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding
101918	chr17	74459901	74460100	+	0	NA	Intergenic	Intergenic	-6373	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
67457	chr14	70820001	70820200	+	0	NA	Intergenic	Intergenic	-10587	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
230120	chr9	127712371	127712780	+	0	NA	intron (NM_001012502, intron 6 of 8)	intron (NM_001012502, intron 6 of 8)	3088	NM_001002913	138428		NM_001002913	ENSG00000187024	PTRH1	C9orf115|PTH1	peptidyl-tRNA hydrolase 1 homolog	protein-coding
105653	chr18	2569371	2570000	+	0	NA	intron (NM_022840, intron 1 of 8)	intron (NM_022840, intron 1 of 8)	1820	NM_022840	64863		NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase 4, N6-adenosine	protein-coding
10181	chr1	61452871	61453600	+	0	NA	intron (NM_001145512, intron 11 of 11)	intron (NM_001145512, intron 11 of 11)	-199717	NR_104180	645030		NR_104180	ENSG00000237853	NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
111571	chr19	4059201	4060850	+	0	NA	intron (NM_015898, intron 1 of 2)	CpG	5504	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
201070	chr6	142692801	142693300	+	0	NA	Intergenic	Intergenic	-55161	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
130626	chr2	86035471	86036900	+	0	NA	intron (NM_015425, intron 27 of 33)	intron (NM_015425, intron 27 of 33)	69701	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
76056	chr15	72317301	72317630	+	0	NA	intron (NM_052840, intron 1 of 12)	MIR3|SINE|MIR	2481	NM_001172684	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
226537	chr9	72292151	72292450	+	0	NA	Intergenic	Intergenic	-13136	NR_110952	100507540		NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
20733	chr1	200899671	200900030	+	0	NA	intron (NM_018265, intron 3 of 9)	intron (NM_018265, intron 3 of 9)	4950	NM_001367290	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
144159	chr20	34061451	34061550	+	0	NA	intron (NM_016732, intron 2 of 9)	MER5C1|DNA|hAT-Charlie	12381	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
25971	chr10	11710571	11711730	+	0	NA	Intergenic	AluSx|SINE|Alu	-31232	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
21979	chr1	209650771	209651450	+	0	NA	5' UTR (NM_001017402, exon 1 of 22)	5' UTR (NM_001017402, exon 1 of 22)	224	NM_001017402	3914		NM_000228	ENSG00000196878	LAMB3	AI1A|BM600-125KDA|JEB1A|JEB1B|LAM5|LAMNB1	laminin subunit beta 3	protein-coding
34857	chr11	330551	331980	+	0	NA	Intergenic	Intergenic	-10405	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
51687	chr12	53099291	53100580	+	0	NA	intron (NM_002178, intron 1 of 3)	AluSx1|SINE|Alu	2268	NM_002178	3489		NM_002178	ENSG00000167779	IGFBP6	IBP6	insulin like growth factor binding protein 6	protein-coding
129789	chr2	71282451	71282780	+	0	NA	Intergenic	Intergenic	-49140	NM_001014972	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
192868	chr6	27312201	27312880	+	0	NA	promoter-TSS (NM_033482)	promoter-TSS (NM_033482)	-308	NM_033482	94026		NM_033482	ENSG00000158553	POM121L2	POM121-L|POM121L	POM121 transmembrane nucleoporin like 2	protein-coding
26190	chr10	14544851	14545150	+	0	NA	intron (NM_031453, intron 2 of 4)	MER5A|DNA|hAT-Charlie	3637	NM_001320739	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
87886	chr16	78705801	78706200	+	0	NA	intron (NM_016373, intron 8 of 8)	L2a|LINE|L2	606346	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
68851	chr14	91295471	91296980	+	0	NA	intron (NM_001080414, intron 22 of 29)	intron (NM_001080414, intron 22 of 29)	-42345	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
19296	chr1	172883151	172883250	+	0	NA	Intergenic	L2a|LINE|L2	167741	NM_005092	8995		NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	TNF superfamily member 18	protein-coding
82870	chr16	21534451	21534850	+	0	NA	Intergenic	Intergenic	-14206	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
70922	chr14	104224371	104224730	+	0	NA	intron (NR_146612, intron 1 of 2)	intron (NR_146612, intron 1 of 2)	966	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
25302	chr10	6205671	6206150	+	0	NA	intron (NM_001314063, intron 1 of 15)	FRAM|SINE|Alu	2978	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
69462	chr14	94945321	94946000	+	0	NA	Intergenic	AluSz|SINE|Alu	175018	NR_144432	108868751		NR_144432		GSC-DT	DIGIT	GSC divergent transcript	ncRNA
217376	chr8	28081821	28082680	+	0	NA	intron (NM_001010906, intron 1 of 18)	intron (NM_001010906, intron 1 of 18)	1686	NM_001010906	389643		NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC|SLIPGC	nuclear GTPase, germinal center associated	protein-coding
116446	chr19	18050921	18051200	+	0	NA	Intergenic	AluJr|SINE|Alu	35874	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
70893	chr14	103905851	103906150	+	0	NA	Intergenic	Intergenic	15529	NM_001127393	9556		NM_004894	ENSG00000156411	ATP5MJ	6.8PL|ATP5MPL|C14orf2|MLQ|MP68|PLPM	ATP synthase membrane subunit j	protein-coding
126663	chr2	29014301	29015420	+	0	NA	intron (NM_001321539, intron 8 of 15)	intron (NM_001321539, intron 8 of 15)	33562	NM_001321538	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
68158	chr14	75656171	75656330	+	0	NA	intron (NM_007176, intron 2 of 4)	intron (NM_007176, intron 2 of 4)	4626	NM_007176	11161		NM_007176	ENSG00000133935	ERG28	C14orf1|NET51	ergosterol biosynthesis 28 homolog	protein-coding
190738	chr6	371521	372200	+	0	NA	Intergenic	(AGCAGC)n|Simple_repeat|Simple_repeat	-19892	NR_046000	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
114744	chr19	13240951	13241780	+	0	NA	intron (NM_023035, intron 31 of 46)	intron (NM_023035, intron 31 of 46)	90954	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
26165	chr10	14390321	14390600	+	0	NA	Intergenic	Intergenic	-7183	NR_036181	100422843		NR_036181	ENSG00000266321	MIR4293	-	microRNA 4293	ncRNA
106782	chr18	23862351	23862650	+	0	NA	intron (NM_198129, intron 35 of 74)	intron (NM_198129, intron 35 of 74)	-10520	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
183442	chr5	78983601	78983800	+	0	NA	intron (NM_000046, intron 1 of 7)	intron (NM_000046, intron 1 of 7)	1610	NM_000046	411		NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
43223	chr11	75439451	75440530	+	0	NA	intron (NM_030792, intron 14 of 16)	intron (NM_030792, intron 14 of 16)	-9361	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
127419	chr2	42125701	42126380	+	0	NA	Intergenic	Intergenic	-43313	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
25748	chr10	9229601	9230000	+	0	NA	intron (NR_120635, intron 4 of 4)	intron (NR_120635, intron 4 of 4)	-45813	NR_108039	100507163		NR_108039		LINC00709	-	long intergenic non-protein coding RNA 709	ncRNA
238547	chrX	153767921	153768750	+	0	NA	exon (NM_005393, exon 4 of 36)	exon (NM_005393, exon 4 of 36)	4086	NM_005393	5365		NM_005393	ENSG00000198753	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
223347	chr8	143844051	143844780	+	0	NA	Intergenic	LTR13|LTR|ERVK	-3442	NM_178564	340371		NM_178564	ENSG00000185189	NRBP2	TRG16|pp9320	nuclear receptor binding protein 2	protein-coding
108549	chr18	74595321	74595780	+	0	NA	intron (NR_024484, intron 1 of 1)	intron (NR_024484, intron 1 of 1)	2285	NR_024484	400657		NM_001008234	ENSG00000264247	ZNF407-AS1	LINC00909	ZNF407 antisense RNA 1	ncRNA
124466	chr19	58537071	58537700	+	0	NA	intron (NM_001316980, intron 1 of 2)	intron (NM_001316980, intron 1 of 2)	1526	NM_001316982	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
98475	chr17	47190401	47190600	+	0	NA	Intergenic	Intergenic	-1205	NM_001353049	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
236612	chrX	74383621	74383880	+	0	NA	Intergenic	L1M4|LINE|L1	-37743	NM_006517	6567		NM_006517	ENSG00000147100	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16 member 2	protein-coding
98323	chr17	46258471	46258630	+	0	NA	Intergenic	L1PB1|LINE|L1	-33183	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
74022	chr15	52179001	52181100	+	0	NA	promoter-TSS (NR_102751)	promoter-TSS (NR_102751)	24	NR_102751	100129973		NR_102751		CERNA1	-	competing endogenous lncRNA 1 for miR-4707-5p and miR-4767	ncRNA
223223	chr8	143602221	143602900	+	0	NA	TTS (NR_138144).2	TTS (NR_138144).2	4729	NM_032862	84948		NM_032862	ENSG00000179886	TIGD5	-	tigger transposable element derived 5	protein-coding
103672	chr17	78791321	78791730	+	0	NA	intron (NM_001385179, intron 20 of 20)	intron (NM_001385179, intron 20 of 20)	-9183	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
205302	chr7	11343721	11344000	+	0	NA	Intergenic	Intergenic	369988	NR_033436	9678		NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
95306	chr17	35555621	35556030	+	0	NA	TTS (NR_138031)	TTS (NR_138031)	2620	NR_138032	107985033		NR_138031		LOC107985033	-	uncharacterized LOC107985033	ncRNA
77760	chr15	85765671	85765830	+	0	NA	intron (NM_022480, intron 2 of 2)	AluSz6|SINE|Alu	4828	NR_031682	100302121		NR_031682	ENSG00000221634	MIR1276	MIRN1276|hsa-mir-1276|mir-1276	microRNA 1276	ncRNA
27835	chr10	38390701	38391130	+	0	NA	intron (NR_027269, intron 2 of 3)	LTR84b|LTR|ERVL	12012	NR_027269	285961		NR_027269	ENSG00000291056	SEPTIN7P9	CDC10L|SEPT7L|SEPT7P9|bA291L22.2	septin 7 pseudogene 9	pseudo
165585	chr3	101588601	101589000	+	0	NA	intron (NR_135228, intron 3 of 3)	L1MC4|LINE|L1	14620	NM_020357	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
176804	chr4	102527651	102528400	+	0	NA	intron (NM_001382625, intron 3 of 24)	intron (NM_001382625, intron 3 of 24)	-25539	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
174945	chr4	49138021	49138450	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	151593	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
89641	chr16	89334701	89336730	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	15263	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
18663	chr1	167090351	167090930	+	0	NA	promoter-TSS (NM_005814)	promoter-TSS (NM_005814)	-263	NM_005814	10223		NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
62767	chr13	108225151	108226500	+	0	NA	intron (NM_032859, intron 1 of 1)	intron (NM_032859, intron 1 of 1)	7433	NM_032859	84945		NM_032859	ENSG00000139826	ABHD13	BEM46L1|C13orf6|bA153I24.2	abhydrolase domain containing 13	protein-coding
160406	chr3	28240851	28242050	+	0	NA	promoter-TSS (NM_001331185)	promoter-TSS (NM_001331185)	-169	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
114643	chr19	13011871	13012250	+	0	NA	intron (NM_001365902, intron 1 of 10)	CpG	-11912	NM_001271044	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
195765	chr6	40438551	40438850	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	60363	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
129617	chr2	70115651	70116280	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	9351	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
4305	chr1	20195121	20195400	+	0	NA	3' UTR (NM_152376, exon 2 of 2)	3' UTR (NM_152376, exon 2 of 2)	-8742	NM_001316722	391013		NM_001105572	ENSG00000187980	PLA2G2C	UBXN10-AS1	phospholipase A2 group IIC	protein-coding
126764	chr2	30245901	30246100	+	0	NA	intron (NM_030915, intron 2 of 2)	AluSz6|SINE|Alu	14466	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
77795	chr15	87681101	87681300	+	0	NA	Intergenic	Intergenic	104271	NR_026869	145978		NM_152454	ENSG00000259527	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
15140	chr1	148793451	148794000	+	0	NA	Intergenic	MER41B|LTR|ERV1	-1756	NR_158170	100996517		NR_158170		SEC22B3P	SEC22B3	SEC22 homolog B3, pseudogene	pseudo
63551	chr14	20332671	20333730	+	0	NA	promoter-TSS (NM_021178)	promoter-TSS (NM_021178)	79	NM_021178	57820		NM_021178	ENSG00000100814	CCNB1IP1	C14orf18|HEI10	cyclin B1 interacting protein 1	protein-coding
88784	chr16	87324451	87325530	+	0	NA	Intergenic	Intergenic	7481	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
7670	chr1	35765871	35766030	+	0	NA	intron (NM_022111, intron 1 of 24)	L1MC5|LINE|L1	4028	NM_022111	63967		NM_022111	ENSG00000092853	CLSPN	-	claspin	protein-coding
9244	chr1	46134551	46135000	+	0	NA	intron (NR_125987, intron 2 of 2)	intron (NR_125987, intron 2 of 2)	1404	NR_125987	101929626		NR_125987	ENSG00000227857	LOC101929626	-	uncharacterized LOC101929626	ncRNA
33962	chr10	124643401	124644000	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-60328	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
120322	chr19	43524701	43525880	+	0	NA	intron (NM_001320869, intron 1 of 4)	intron (NM_001320869, intron 1 of 4)	1911	NM_001320867	23474		NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1 persulfide dioxygenase	protein-coding
223841	chr8	145078051	145078380	+	0	NA	Intergenic	L1P1|LINE|L1	25748	NM_023080	65265		NM_023080	ENSG00000182307	C8orf33	-	chromosome 8 open reading frame 33	protein-coding
80055	chr16	1973521	1974100	+	0	NA	intron (NM_006453, intron 1 of 21)	intron (NM_006453, intron 1 of 21)	1757	NM_006453	10607		NM_006453	ENSG00000183751	TBL3	SAZD|UTP13	transducin beta like 3	protein-coding
79103	chr16	190751	191350	+	0	NA	intron (NM_018032, intron 7 of 8)	intron (NM_018032, intron 7 of 8)	10591	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
39038	chr11	47797601	47798000	+	0	NA	exon (NM_015231, exon 27 of 36)	exon (NM_015231, exon 27 of 36)	-30459	NM_001318339	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
152984	chr22	23143621	23144000	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1514	NM_001349878	9609		NM_004914	ENSG00000100228	RAB36	-	RAB36, member RAS oncogene family	protein-coding
126286	chr2	27203621	27203980	+	0	NA	exon (NM_021095, exon 10 of 17)	exon (NM_021095, exon 10 of 17)	8468	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
161238	chr3	39224051	39224550	+	0	NA	Intergenic	L2a|LINE|L2	-31705	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
158855	chr3	9827121	9827780	+	0	NA	intron (NM_001366051, intron 9 of 12)	AluJb|SINE|Alu	16558	NM_001351736	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
228409	chr9	99196571	99196730	+	0	NA	Intergenic	MER4A1|LTR|ERV1	25292	NM_033087	85365		NM_033087	ENSG00000119523	ALG2	CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2	ALG2 alpha-1,3/1,6-mannosyltransferase	protein-coding
109151	chr18	80261901	80263200	+	0	NA	Intergenic	TAR1|Satellite|telo	-15036	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
176037	chr4	82369271	82369430	+	0	NA	intron (NM_001003810, intron 1 of 6)	intron (NM_001003810, intron 1 of 6)	4641	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
84437	chr16	30396701	30397250	+	0	NA	intron (NM_001214906, intron 2 of 2)	AluJb|SINE|Alu	1555	NM_001324494	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
101692	chr17	68441051	68441480	+	0	NA	3' UTR (NM_001352909, exon 11 of 11)	3' UTR (NM_001352909, exon 11 of 11)	16231	NM_017983	55062		NM_017983	ENSG00000070540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
65003	chr14	38197151	38197480	+	0	NA	Intergenic	Intergenic	-10589	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
75207	chr15	64834471	64834830	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-7233	NM_001195059	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
147102	chr20	53879171	53879530	+	0	NA	Intergenic	Intergenic	-3641	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
217043	chr8	23263221	23264450	+	0	NA	Intergenic	Intergenic	17194	NM_001317899	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
40540	chr11	64308871	64309250	+	0	NA	intron (NM_004451, intron 2 of 6)	AluSq2|SINE|Alu	2833	NM_001282450	2101		NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen related receptor alpha	protein-coding
68026	chr14	75155021	75155680	+	0	NA	intron (NM_006827, intron 1 of 4)	L2c|LINE|L2	21262	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
117324	chr19	19514201	19514980	+	0	NA	3' UTR (NM_032037, exon 1 of 1)	3' UTR (NM_032037, exon 1 of 1)	958	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
236966	chrX	101390551	101392600	+	0	NA	promoter-TSS (NM_001287344)	promoter-TSS (NM_001287344)	564	NM_021029	6173		NM_021029	ENSG00000241343	RPL36A	L36A|L44L|MIG6|RPL44|eL42	ribosomal protein L36a	protein-coding
13456	chr1	114507251	114507850	+	0	NA	intron (NM_033020, intron 1 of 18)	MIRc|SINE|MIR	3653	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
16798	chr1	155551521	155551780	+	0	NA	intron (NM_018489, intron 1 of 27)	AluYa5|SINE|Alu	-10392	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
160094	chr3	18847571	18847830	+	0	NA	Intergenic	Intergenic	-300810	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
148960	chr21	13370401	13370600	+	0	NA	Intergenic	L1MDb|LINE|L1	35960	NR_036164	100423018		NR_036164	ENSG00000266211	MIR3156-3	mir-3156-3	microRNA 3156-3	ncRNA
128138	chr2	48347351	48348000	+	0	NA	intron (NR_164691, intron 2 of 4)	L1MEg|LINE|L1	32993	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
199501	chr6	118679451	118680080	+	0	NA	intron (NM_001178035, intron 1 of 13)	MER102c|DNA|hAT-Charlie	-28174	NM_001042475	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
167888	chr3	136139371	136139530	+	0	NA	intron (NM_002718, intron 13 of 13)	AluSc5|SINE|Alu	55018	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
150150	chr21	38768421	38768980	+	0	NA	intron (NR_027065, intron 1 of 6)	intron (NR_027065, intron 1 of 6)	274	NR_027066	400866		NM_001001789	ENSG00000223806	LINC00114	C21orf24|NCRNA00114	long intergenic non-protein coding RNA 114	ncRNA
53624	chr12	68154751	68155150	+	0	NA	3' UTR (NM_000619, exon 4 of 4)	3' UTR (NM_000619, exon 4 of 4)	4790	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
6061	chr1	27141551	27141930	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	13385	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
84955	chr16	31366801	31367000	+	0	NA	intron (NM_000887, intron 14 of 29)	Tigger1|DNA|TcMar-Tigger	11724	NM_000887	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
14513	chr1	144643401	144643880	+	0	NA	intron (NR_104189, intron 2 of 3).2	(GCG)n|Simple_repeat|Simple_repeat	2271	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
166116	chr3	111210371	111210630	+	0	NA	Intergenic	L2a|LINE|L2	138684	NM_001243288	25945		NM_015480	ENSG00000177707	NECTIN3	CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3	nectin cell adhesion molecule 3	protein-coding
183711	chr5	80987751	80988050	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-26993	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
125860	chr2	24507571	24507930	+	0	NA	intron (NM_001362954, intron 1 of 23)	L4_A_Mam|LINE|RTE-X	15873	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
48961	chr12	12879251	12879350	+	0	NA	Intergenic	AluSg|SINE|Alu	3823	NR_003932	387841		NR_003932	ENSG00000234498	RPL13AP20	HANR|RPL13A_9_1211	ribosomal protein L13a pseudogene 20	pseudo
140151	chr2	231604251	231606080	+	0	NA	Intergenic	Intergenic	12301	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
111820	chr19	4505451	4505980	+	0	NA	intron (NM_001367868, intron 6 of 7)	intron (NM_001367868, intron 6 of 7)	12771	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
158961	chr3	10224801	10225500	+	0	NA	intron (NM_001570, intron 9 of 12)	intron (NM_001570, intron 9 of 12)	-23309	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
59543	chr13	27263321	27263580	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-7380	NM_206827	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
189021	chr5	168814251	168814350	+	0	NA	intron (NM_003062, intron 8 of 35)	AluSq2|SINE|Alu	-46045	NR_029632	407001		NR_029632	ENSG00000207739	MIR218-2	MIRN218-2|mir-218-2	microRNA 218-2	ncRNA
146329	chr20	49229671	49231750	+	0	NA	intron (NM_017895, intron 9 of 20)	intron (NM_017895, intron 9 of 20)	11294	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
89010	chr16	88013301	88013600	+	0	NA	intron (NM_001173542, intron 6 of 12)	intron (NM_001173542, intron 6 of 12)	36297	NM_001384940	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
238792	chrX	154381501	154382180	+	0	NA	TTS (NM_000117)	TTS (NM_000117)	2545	NM_000117	2010		NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
175700	chr4	77075801	77077750	+	0	NA	promoter-TSS (NM_001348139)	promoter-TSS (NM_001348139)	-786	NM_006835	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
36940	chr11	10920171	10920330	+	0	NA	Intergenic	Intergenic	62033	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
139655	chr2	226802451	226802980	+	0	NA	intron (NM_001349069, intron 1 of 8)	intron (NM_001349069, intron 1 of 8)	2556	NM_001349069	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
47504	chr12	4051671	4051830	+	0	NA	Intergenic	(GTG)n|Simple_repeat|Simple_repeat	-178302	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
23689	chr1	231464921	231465180	+	0	NA	Intergenic	L1MB2|LINE|L1	11475	NR_033826	645339		NR_033826		SNRPD2P2	-	small nuclear ribonucleoprotein D2 pseudogene 2	pseudo
43706	chr11	86022451	86022750	+	0	NA	intron (NM_007166, intron 3 of 19)	intron (NM_007166, intron 3 of 19)	46484	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
56113	chr12	110742201	110744080	+	0	NA	promoter-TSS (NM_001244974)	promoter-TSS (NM_001244974)	-249	NM_002710	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
76783	chr15	77010851	77011680	+	0	NA	intron (NM_001321136, intron 2 of 15)	MIRb|SINE|MIR	16139	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
236998	chrX	101659901	101660100	+	0	NA	promoter-TSS (NM_014782)	promoter-TSS (NM_014782)	-150	NM_014782	9823		NM_014782	ENSG00000184867	ARMCX2	ALEX2|GASP9	armadillo repeat containing X-linked 2	protein-coding
113591	chr19	10278001	10278430	+	0	NA	intron (NM_000201, intron 2 of 6)	intron (NM_000201, intron 2 of 6)	7095	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
153511	chr22	26500621	26500880	+	0	NA	intron (NM_001346862, intron 6 of 12)	MER5A|DNA|hAT-Charlie	11723	NM_012143	24144		NM_012143	ENSG00000100109	TFIP11	NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6	tuftelin interacting protein 11	protein-coding
72818	chr15	40107471	40107630	+	0	NA	promoter-TSS (NM_033503)	promoter-TSS (NM_033503)	-922	NM_033503	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
203090	chr6	166381401	166382300	+	0	NA	intron (NR_073093, intron 1 of 4)	intron (NR_073093, intron 1 of 4)	1090	NR_164830	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
53977	chr12	74547571	74547730	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	9815	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
1474	chr1	2692901	2693300	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-60084	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
176210	chr4	84481201	84481400	+	0	NA	Intergenic	Intergenic	17992	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
5971	chr1	26923901	26924250	+	0	NA	intron (NM_006600, intron 1 of 8)	intron (NM_006600, intron 1 of 8)	2332	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
153836	chr22	29998601	29998800	+	0	NA	intron (NM_153051, intron 7 of 18)	intron (NM_153051, intron 7 of 18)	-8349	NR_106876	102466742		NR_106876	ENSG00000275818	MIR6818	hsa-mir-6818	microRNA 6818	ncRNA
98093	chr17	45591651	45591830	+	0	NA	Intergenic	AluSx3|SINE|Alu	10122	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
74392	chr15	58920871	58921030	+	0	NA	intron (NR_135043, intron 1 of 18)	AluSx1|SINE|Alu	12729	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
7918	chr1	37486351	37486480	+	0	NA	Intergenic	Intergenic	6185	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
220923	chr8	107779951	107780050	+	0	NA	Intergenic	Intergenic	-282082	NM_001146	284		NM_001146	ENSG00000154188	ANGPT1	AGP1|AGPT|AGPT-1|ANG1|HAE5	angiopoietin 1	protein-coding
146023	chr20	46994321	46994700	+	0	NA	intron (NM_172110, intron 2 of 13)	intron (NM_172110, intron 2 of 13)	99667	NM_005244	2139		NM_005244	ENSG00000064655	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding
139905	chr2	230721521	230722150	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	8287	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
72111	chr15	28944721	28944980	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	10846	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
52781	chr12	56692351	56692650	+	0	NA	Intergenic	AluY|SINE|Alu	-4092	NM_001282604	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
46155	chr11	123060201	123060850	+	0	NA	intron (NM_006597, intron 3 of 8)	intron (NM_006597, intron 3 of 8)	-1103	NR_001453	85389		NR_001453	ENSG00000202252	SNORD14C	-	small nucleolar RNA, C/D box 14C	snoRNA
230674	chr9	128716351	128717630	+	0	NA	intron (NM_001317926, intron 16 of 21)	intron (NM_001317926, intron 16 of 21)	7137	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
35882	chr11	2396701	2397600	+	0	NA	3' UTR (NM_001297649, exon 8 of 8)	3' UTR (NM_001297649, exon 8 of 8)	-3600	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
11853	chr1	92977671	92978830	+	0	NA	Intergenic	AluY|SINE|Alu	-16728	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
81442	chr16	8867921	8869900	+	0	NA	promoter-TSS (NM_014316)	promoter-TSS (NM_014316)	96	NM_014316	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
108576	chr18	75037171	75037540	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	168158	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
143510	chr20	31521351	31521650	+	0	NA	intron (NM_178580, intron 1 of 12)	AluSc8|SINE|Alu	7058	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
106850	chr18	24050451	24050750	+	0	NA	intron (NM_001135993, intron 1 of 13)	AluSq2|SINE|Alu	-35140	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
166634	chr3	119628521	119629080	+	0	NA	exon (NM_001293225, exon 10 of 11)	exon (NM_001293225, exon 10 of 11)	28529	NM_001293225	51365		NM_015900	ENSG00000144837	PLA1A	PS-PLA1|PSPLA1	phospholipase A1 member A	protein-coding
13305	chr1	113391001	113392480	+	0	NA	intron (NM_152900, intron 1 of 20)	intron (NM_152900, intron 1 of 20)	1225	NM_152900	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
6508	chr1	28515121	28515600	+	0	NA	intron (NM_001048199, intron 3 of 11)	AluSx3|SINE|Alu	-2866	NM_001048195	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
226316	chr9	68998871	68999130	+	0	NA	intron (NM_001376039, intron 14 of 14)	MLT1C|LTR|ERVL-MaLR	15113	NM_002732	5568		NM_002732	ENSG00000165059	PRKACG	BDPLT19|KAPG|PKACg	protein kinase cAMP-activated catalytic subunit gamma	protein-coding
207455	chr7	44580221	44580730	+	0	NA	3' UTR (NM_001303060, exon 3 of 3)	3' UTR (NM_001303060, exon 3 of 3)	1756	NM_001303062	222068		NM_182547	ENSG00000158604	TMED4	ERS25|GMP25iso|HNLF|p24a3|p24alpha3	transmembrane p24 trafficking protein 4	protein-coding
76821	chr15	77155951	77156330	+	0	NA	intron (NM_024776, intron 6 of 7)	L1PA4|LINE|L1	69264	NR_026813	81698		NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	ncRNA
172941	chr4	3520851	3520950	+	0	NA	intron (NR_110005, intron 2 of 7)	intron (NR_110005, intron 2 of 7)	11249	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
65669	chr14	52532351	52534000	+	0	NA	intron (NM_020784, intron 6 of 20)	intron (NM_020784, intron 6 of 20)	19330	NM_020784	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
61661	chr13	73945371	73945550	+	0	NA	intron (NM_007249, intron 2 of 7)	AluSq2|SINE|Alu	188469	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
170697	chr3	187889801	187890000	+	0	NA	Intergenic	Intergenic	86507	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
12564	chr1	108702201	108702630	+	0	NA	3' UTR (NM_001349768, exon 7 of 7)	3' UTR (NM_001349768, exon 7 of 7)	10105	NM_001349759	55119		NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
194608	chr6	33525771	33525930	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	54426	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
147474	chr20	59121771	59124130	+	0	NA	promoter-TSS (NM_001384354)	promoter-TSS (NM_001384354)	-438	NM_001384354	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
191088	chr6	3746421	3746680	+	0	NA	intron (NM_183373, intron 1 of 4)	intron (NM_183373, intron 1 of 4)	5163	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
210721	chr7	100607951	100608050	+	0	NA	exon (NM_002593, exon 9 of 9)	exon (NM_002593, exon 9 of 9)	-3962	NR_038910	100129845		NR_038910	ENSG00000224729	PCOLCE-AS1	-	PCOLCE antisense RNA 1	ncRNA
217349	chr8	27773401	27773600	+	0	NA	promoter-TSS (NM_001304529)	promoter-TSS (NM_001304529)	-860	NM_001304529	55246		NM_018246	ENSG00000147419	CCDC25	-	coiled-coil domain containing 25	protein-coding
116479	chr19	18106251	18106680	+	0	NA	intron (NM_015016, intron 1 of 26)	AluSc|SINE|Alu	-7649	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
107271	chr18	43279471	43279650	+	0	NA	Intergenic	Intergenic	-2070	NM_020783	6860		NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin 4	protein-coding
52823	chr12	57012471	57012630	+	0	NA	intron (NR_135166, intron 4 of 6)	intron (NR_135166, intron 4 of 6)	3979	NM_001178054	6866		NM_013251	ENSG00000166863	TAC3	HH10|LncZBTB39|NK3|NKB|NKNB|PRO1155|ZNEUROK1	tachykinin precursor 3	protein-coding
76128	chr15	72528871	72529700	+	0	NA	intron (NM_005744, intron 2 of 13)	AluJr|SINE|Alu	54955	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
153497	chr22	26483301	26484600	+	0	NA	promoter-TSS (NR_146314)	promoter-TSS (NR_146314)	73	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
52992	chr12	57503201	57503400	+	0	NA	intron (NM_004990, intron 10 of 20)	AluSq2|SINE|Alu	-9388	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
166733	chr3	121739971	121740200	+	0	NA	intron (NM_001366282, intron 1 of 21)	L1MD2|LINE|L1	9656	NM_001366284	2804		NM_004487	ENSG00000173230	GOLGB1	GCP|GCP372|GOLIM1	golgin B1	protein-coding
137758	chr2	198054301	198054530	+	0	NA	intron (NM_006226, intron 1 of 5)	L1M2|LINE|L1	249822	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
113417	chr19	9673871	9674030	+	0	NA	intron (NM_001300885, intron 1 of 5)	LTR10F|LTR|ERV1	1150	NM_001130031	54811		NM_017656	ENSG00000171466	ZNF562	-	zinc finger protein 562	protein-coding
143767	chr20	32405321	32405980	+	0	NA	intron (NM_015338, intron 3 of 11)	L1MC4|LINE|L1	46585	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
169530	chr3	170158471	170158630	+	0	NA	intron (NM_001308116, intron 4 of 14)	AluSx3|SINE|Alu	23183	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
87201	chr16	69434671	69435280	+	0	NA	intron (NM_030579, intron 1 of 4)	L1ME2|LINE|L1	10356	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
2306	chr1	9004751	9005530	+	0	NA	intron (NM_207420, intron 10 of 11)	intron (NM_207420, intron 10 of 11)	21205	NM_207420	155184		NM_207420	ENSG00000197241	SLC2A7	GLUT-7|GLUT7|hGLUT7	solute carrier family 2 member 7	protein-coding
28248	chr10	45582471	45582630	+	0	NA	intron (NM_145021, intron 1 of 6)	MIR3|SINE|MIR	12356	NM_145021	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
19485	chr1	175022851	175024350	+	0	NA	promoter-TSS (NM_022100)	promoter-TSS (NM_022100)	-145	NR_037606	63931		NM_022100	ENSG00000120333	MRPS14	COXPD38|DJ262D12.2|HSMRPS14|MRP-S14|S14mt|uS14m	mitochondrial ribosomal protein S14	protein-coding
198018	chr6	90125921	90126380	+	0	NA	intron (NM_021813, intron 4 of 8)	X7A_LINE|LINE|CR1	170693	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
194958	chr6	35299601	35300150	+	0	NA	intron (NM_022047, intron 1 of 10)	intron (NM_022047, intron 1 of 10)	2057	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
190390	chr5	179793521	179794350	+	0	NA	promoter-TSS (NM_145867)	promoter-TSS (NM_145867)	-51	NM_145867	4056		NM_000897	ENSG00000213316	LTC4S	-	leukotriene C4 synthase	protein-coding
148648	chr21	6096221	6096480	+	0	NA	Intergenic	Intergenic	-4685	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
136148	chr2	174328451	174329450	+	0	NA	intron (NR_038897, intron 2 of 2)	CpG	2923	NR_038897	285084		NR_038897	ENSG00000231453	LINC01305	-	long intergenic non-protein coding RNA 1305	ncRNA
141445	chr2	241033771	241034180	+	0	NA	intron (NM_001080437, intron 3 of 31)	intron (NM_001080437, intron 3 of 31)	35357	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
230773	chr9	128912871	128913030	+	0	NA	intron (NM_019594, intron 3 of 3)	intron (NM_019594, intron 3 of 3)	-8032	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
214514	chr7	150480151	150480250	+	0	NA	TTS (NM_175571)	TTS (NM_175571)	29570	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
57394	chr12	121820571	121821130	+	0	NA	intron (NM_001353345, intron 11 of 16)	intron (NM_001353345, intron 11 of 16)	16841	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
175025	chr4	52658841	52660250	+	0	NA	promoter-TSS (NM_001286768)	promoter-TSS (NM_001286768)	139	NR_125363	643783		NR_125363	ENSG00000248866	USP46-DT	USP46-AS1	USP46 divergent transcript	ncRNA
12229	chr1	100414451	100415550	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	62494	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
83960	chr16	29153451	29153750	+	0	NA	Intergenic	Intergenic	78758	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
212289	chr7	123755401	123755600	+	0	NA	Intergenic	Intergenic	-6497	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
82274	chr16	15157351	15157450	+	0	NA	Intergenic	Intergenic	1121	NR_037442	100500910		NR_037442	ENSG00000263918	MIR3670-1	MIR3670|hsa-mir-3670-1	microRNA 3670-1	ncRNA
174423	chr4	39454801	39455000	+	0	NA	exon (NM_001024921, exon 6 of 8)	exon (NM_001024921, exon 6 of 8)	4022	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
62723	chr13	104984351	104984800	+	0	NA	Intergenic	Intergenic	-481292	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
63147	chr13	113587671	113588180	+	0	NA	intron (NR_026580, intron 2 of 10)	AluSq2|SINE|Alu	3172	NM_007111	7027		NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
208687	chr7	73234501	73236250	+	0	NA	intron (NR_003186, intron 7 of 7)	CpG-25995	14736	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
146189	chr20	48763171	48763480	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	64674	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
233934	chrX	2325151	2325650	+	0	NA	intron (NM_145177, intron 3 of 6)	LTR9|LTR|ERV1	175139	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
138689	chr2	213085671	213086030	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	64587	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
18627	chr1	166164971	166165550	+	0	NA	intron (NR_163271, intron 1 of 2)	CpG	1495	NR_163271	149297		NM_001017961	ENSG00000188859	FAM78B	-	family with sequence similarity 78 member B	protein-coding
100164	chr17	58620321	58620580	+	0	NA	intron (NM_198393, intron 5 of 32)	AluSx3|SINE|Alu	71595	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
64262	chr14	23264921	23265380	+	0	NA	intron (NM_001370218, intron 12 of 15)	intron (NM_001370218, intron 12 of 15)	20982	NM_020834	57594		NM_020834	ENSG00000290292	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding
117184	chr19	19359671	19360050	+	0	NA	Intergenic	AluSz|SINE|Alu	-25983	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
163698	chr3	52267851	52268380	+	0	NA	TTS (NR_029660)	TTS (NR_029660)	246	NR_029660	406890		NR_029660	ENSG00000199150	MIRLET7G	LET7G|MIRNLET7G|hsa-let-7g|let-7g	microRNA let-7g	ncRNA
160983	chr3	37225171	37225730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17821	NM_002078	2803		NM_002078	ENSG00000144674	GOLGA4	CRPF46|GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
98367	chr17	46372351	46372950	+	0	NA	promoter-TSS (NR_033799)	promoter-TSS (NR_033799)	-163	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
15954	chr1	151838001	151839090	+	0	NA	non-coding (NR_024237, exon 1 of 5)	non-coding (NR_024237, exon 1 of 5)	268	NR_152846	100132111		NR_024237		C2CD4D-AS1	-	C2CD4D and THEM5 antisense RNA 1	ncRNA
103232	chr17	77496821	77497630	+	0	NA	intron (NM_001293697, intron 8 of 9)	intron (NM_001293697, intron 8 of 9)	21590	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
83995	chr16	29448351	29448450	+	0	NA	promoter-TSS (NR_002454)	promoter-TSS (NR_002454)	-945	NR_002454	606724		NR_002454		LOC606724	-	coronin 1A pseudogene	pseudo
201617	chr6	149391501	149391700	+	0	NA	intron (NM_001369506, intron 4 of 7)	AluJb|SINE|Alu	-8662	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
131619	chr2	96949771	96950330	+	0	NA	intron (NM_001122646, intron 7 of 16)	intron (NM_001122646, intron 7 of 16)	30944	NR_110209	101927053		NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
104752	chr17	81688401	81688600	+	0	NA	intron (NM_004712, intron 4 of 21)	intron (NM_004712, intron 4 of 21)	4489	NM_004712	9146		NM_004712	ENSG00000185359	HGS	HRS	hepatocyte growth factor-regulated tyrosine kinase substrate	protein-coding
192159	chr6	17584051	17584830	+	0	NA	Intergenic	Intergenic	-15862	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
160212	chr3	23919871	23920900	+	0	NA	3' UTR (NM_001253383, exon 4 of 4)	3' UTR (NM_001253383, exon 4 of 4)	3253	NM_001253383	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
14496	chr1	144553871	144554480	+	0	NA	Intergenic	Intergenic	-2232	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
144868	chr20	36908171	36908530	+	0	NA	intron (NM_001363733, intron 11 of 15)	AluJb|SINE|Alu	32212	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
123360	chr19	53886771	53886950	+	0	NA	intron (NM_001316329, intron 3 of 18)	MIR|SINE|MIR	4663	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
138560	chr2	207629921	207630180	+	0	NA	Intergenic	Intergenic	-3997	NM_001330133	151194		NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase 21A, HSPA lysine	protein-coding
26600	chr10	22246171	22247350	+	0	NA	Intergenic	L2b|LINE|L2	-5312	NR_038921	100130992		NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
55251	chr12	102043571	102044400	+	0	NA	intron (NM_016053, intron 4 of 6)	intron (NM_016053, intron 4 of 6)	18006	NM_016053	51019		NM_016053	ENSG00000120860	WASHC3	CCDC53|CGI-116	WASH complex subunit 3	protein-coding
61316	chr13	50361151	50361750	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	165999	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
51259	chr12	51047501	51048800	+	0	NA	promoter-TSS (NM_001351324)	promoter-TSS (NM_001351324)	-70	NR_147098	25875		NM_015416	ENSG00000050426	LETMD1	1110019O13Rik|HCCR|HCCR-1|HCCR-2|HCCR1|HCCR2|HCRR-2|SLC55A3	LETM1 domain containing 1	protein-coding
225341	chr9	34639471	34639630	+	0	NA	Intergenic	AluJb|SINE|Alu	-1724	NM_001282207	10280		NM_005866	ENSG00000147955	SIGMAR1	ALS16|DSMA2|HMNR2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding
239368	chrY	20746751	20747180	+	0	NA	Intergenic	Intergenic	-9143	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
43267	chr11	75585101	75585500	+	0	NA	intron (NR_145823, intron 1 of 1)	intron (NR_145823, intron 1 of 1)	2104	NR_145823	105369391		NR_145823	ENSG00000255326	LOC105369391	-	uncharacterized LOC105369391	ncRNA
93731	chr17	19647671	19649580	+	0	NA	promoter-TSS (NM_001369136)	promoter-TSS (NM_001369136)	-126	NM_001369139	224		NM_000382	ENSG00000072210	ALDH3A2	ALDH10|FALDH|SLS	aldehyde dehydrogenase 3 family member A2	protein-coding
68045	chr14	75229901	75231200	+	0	NA	Intergenic	MIRb|SINE|MIR	-48278	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
112013	chr19	5030621	5030880	+	0	NA	intron (NM_001370093, intron 2 of 11)	intron (NM_001370093, intron 2 of 11)	61637	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
131787	chr2	98502601	98502800	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	56690	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
152093	chr22	19780371	19780630	+	0	NA	TTS (NM_080646)	TTS (NM_080646)	19722	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
90344	chr17	1189171	1189330	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	-1978	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
201789	chr6	149981921	149982480	+	0	NA	Intergenic	L1PA16|LINE|L1	18257	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
98678	chr17	47853471	47854380	+	0	NA	intron (NM_199262, intron 1 of 1)	intron (NM_199262, intron 1 of 1)	1772	NM_199262	80320		NM_199262	ENSG00000189120	SP6	AI1K|EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
232507	chr9	136277821	136278080	+	0	NA	intron (NM_001378188, intron 10 of 25)	intron (NM_001378188, intron 10 of 25)	26144	NM_001378188	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
21004	chr1	202810451	202811780	+	0	NA	non-coding (NR_046326, exon 1 of 2)	non-coding (NR_046326, exon 1 of 2)	169	NR_046326	100506696		NR_046325	ENSG00000228288	PCAT6	KDM5B-AS1|KDM5BAS1|PCAN-R1|ncRNA-a2|onco-lncRNA-96	prostate cancer associated transcript 6	ncRNA
102509	chr17	75780821	75781550	+	0	NA	Intergenic	AluY|SINE|Alu	-1406	NM_005324	3021		NM_005324	ENSG00000132475	H3-3B	BRYLIB2|H3-3A|H3.3B|H3F3B	H3.3 histone B	protein-coding
150395	chr21	42301121	42301630	+	0	NA	Intergenic	Intergenic	14034	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
110315	chr19	1847821	1849090	+	0	NA	promoter-TSS (NM_020695)	promoter-TSS (NM_020695)	28	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
62881	chr13	110676571	110676730	+	0	NA	intron (NM_001352252, intron 8 of 15)	intron (NM_001352252, intron 8 of 15)	29466	NR_147942	79587		NM_024537	ENSG00000134905	CARS2	COXPD27|cysRS	cysteinyl-tRNA synthetase 2, mitochondrial	protein-coding
138717	chr2	213139621	213139880	+	0	NA	intron (NM_001371277, intron 3 of 6)	MamRep605|LTR?|LTR?	10687	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
176626	chr4	99811571	99812180	+	0	NA	Intergenic	Intergenic	-4952	NM_001306151	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
6981	chr1	31798571	31798930	+	0	NA	intron (NM_144569, intron 7 of 15)	MIRb|SINE|MIR	17301	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
208719	chr7	73325301	73325500	+	0	NA	intron (NM_001281450, intron 1 of 6)	intron (NM_001281450, intron 1 of 6)	175	NM_001281451	135892		NM_178125	ENSG00000146755	TRIM50	TRIM50A	tripartite motif containing 50	protein-coding
191441	chr6	10659651	10660550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	34509	NM_001145020	347744		NM_001145020	ENSG00000137434	C6orf52	-	chromosome 6 open reading frame 52	protein-coding
149164	chr21	17813521	17813980	+	0	NA	intron (NM_017447, intron 2 of 4)	Tigger4a|DNA|TcMar-Tigger	5606	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
62188	chr13	97581651	97581750	+	0	NA	Intergenic	AluSg7|SINE|Alu	147531	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
120182	chr19	42266351	42266650	+	0	NA	Intergenic	AluJr|SINE|Alu	-2030	NM_001304815	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
64591	chr14	25150971	25151200	+	0	NA	Intergenic	Intergenic	-100788	NM_001351940	29091		NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding
42571	chr11	71962201	71962600	+	0	NA	intron (NR_024148, intron 3 of 8)	Charlie15a|DNA|hAT-Charlie	33354	NM_018320	55298		NM_018320	ENSG00000137522	RNF121	-	ring finger protein 121	protein-coding
38597	chr11	46295021	46296180	+	0	NA	intron (NM_052854, intron 1 of 11)	CpG	17938	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
44142	chr11	96148871	96149230	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-192388	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
533	chr1	1228871	1229430	+	0	NA	intron (NM_016547, intron 1 of 6)	intron (NM_016547, intron 1 of 6)	2851	NM_016176	51150		NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
197057	chr6	53546201	53546650	+	0	NA	Intergenic	Intergenic	-1324	NM_001498	2729		NM_001498	ENSG00000001084	GCLC	GCL|GCS|GLCL|GLCLC	glutamate-cysteine ligase catalytic subunit	protein-coding
39012	chr11	47739901	47740300	+	0	NA	intron (NM_015308, intron 8 of 16)	intron (NM_015308, intron 8 of 16)	-24731	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
234203	chrX	12953221	12953980	+	0	NA	Intergenic	Intergenic	-10300	NR_030727	349408		NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
2991	chr1	12018821	12020850	+	0	NA	intron (NM_021933, intron 1 of 9)	CpG	337	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
211	chr1	818771	819200	+	0	NA	non-coding (NR_103536, exon 2 of 2)	non-coding (NR_103536, exon 2 of 2)	1614	NR_103536	400728		NM_207464	ENSG00000177757	FAM87B	-	family with sequence similarity 87 member B	ncRNA
86942	chr16	68109971	68110130	+	0	NA	intron (NM_173165, intron 1 of 9)	AluSx1|SINE|Alu	24680	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
198850	chr6	109370771	109371250	+	0	NA	intron (NM_001142401, intron 3 of 4)	MER58A|DNA|hAT-Charlie	10729	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
105486	chr17	83076851	83077500	+	0	NA	Intergenic	Intergenic	-2434	NM_001004431	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
196576	chr6	44150571	44150950	+	0	NA	intron (NM_001318792, intron 18 of 23)	intron (NM_001318792, intron 18 of 23)	-8060	NM_007058	11131		NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding
144437	chr20	35481401	35482000	+	0	NA	intron (NM_007186, intron 20 of 34)	AluJb|SINE|Alu	21717	NM_001318219	11190		NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1|CRDHL2	centrosomal protein 250	protein-coding
37505	chr11	18420651	18420950	+	0	NA	intron (NM_017448, intron 3 of 7)	L1ME3B|LINE|L1	8482	NM_017448	3948		NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
29497	chr10	70596151	70596850	+	0	NA	TTS (NM_001083116)	TTS (NM_001083116)	6241	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
239396	chrY	21987371	21987530	+	0	NA	Intergenic	L1PA10|LINE|L1	-69383	NM_001006121	378948		NM_001006121	ENSG00000242875	RBMY1B	RBMY1D	RNA binding motif protein Y-linked family 1 member B	protein-coding
112319	chr19	5897221	5897950	+	0	NA	intron (NM_175614, intron 1 of 3)	intron (NM_175614, intron 1 of 3)	6205	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
152399	chr22	20550691	20551700	+	0	NA	intron (NM_001003891, intron 2 of 17)	intron (NM_001003891, intron 2 of 17)	43148	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
78480	chr15	92907401	92907590	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	3096	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
100505	chr17	62042421	62043930	+	0	NA	intron (NM_005121, intron 3 of 29)	AluSz6|SINE|Alu	22103	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
23777	chr1	233294911	233296300	+	0	NA	5' UTR (NM_001328607, exon 1 of 2)	5' UTR (NM_001328607, exon 1 of 2)	120	NM_001328607	80003		NM_014801	ENSG00000135749	PCNX2	PCNXL2	pecanex 2	protein-coding
165141	chr3	71784171	71784430	+	0	NA	intron (NM_001126128, intron 1 of 3)	intron (NM_001126128, intron 1 of 3)	848	NM_001126128	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
42620	chr11	72221651	72221830	+	0	NA	exon (NM_001113536, exon 5 of 5)	exon (NM_001113536, exon 5 of 5)	-3027	NM_001567	3636		NM_001567	ENSG00000165458	INPPL1	OPSMD|SHIP2	inositol polyphosphate phosphatase like 1	protein-coding
232886	chr9	136838421	136839480	+	0	NA	exon (NM_001173988, exon 11 of 15)	exon (NM_001173988, exon 11 of 15)	-3528	NM_001080482	389813		NM_001080482	ENSG00000232434	AJM1	C9orf172|ajm-1	apical junction component 1 homolog	protein-coding
85880	chr16	57051301	57051500	+	0	NA	intron (NM_001384955, intron 23 of 47)	intron (NM_001384955, intron 23 of 47)	-41183	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
36154	chr11	3143001	3143400	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	22110	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
58271	chr12	128844171	128844530	+	0	NA	Intergenic	FLAM_C|SINE|Alu	8745	NR_148996	100128276		NR_148996		LOC100128276	-	uncharacterized LOC100128276	ncRNA
115742	chr19	16284801	16285000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39926	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
129070	chr2	65080451	65080550	+	0	NA	intron (NM_015147, intron 5 of 6)	intron (NM_015147, intron 5 of 6)	24084	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
31440	chr10	95831821	95832980	+	0	NA	intron (NM_001164183, intron 2 of 7)	intron (NM_001164183, intron 2 of 7)	-75575	NM_001349008	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
92796	chr17	15966551	15967050	+	0	NA	intron (NM_000676, intron 1 of 1)	intron (NM_000676, intron 1 of 1)	21883	NM_000676	136		NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
229918	chr9	126619671	126620030	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	5922	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
159889	chr3	16890201	16890400	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	5345	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
95658	chr17	38252121	38253200	+	0	NA	intron (NR_036750, intron 1 of 11)	AluY|SINE|Alu	4589	NR_036750	440434		NR_036750	ENSG00000291088	NPEPPSP1	NPEPPSL1	NPEPPS pseudogene 1	pseudo
22981	chr1	226085821	226086400	+	0	NA	intron (NR_146920, intron 1 of 3)	ERVL-E-int|LTR|ERVL	2535	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
133910	chr2	130327801	130328000	+	0	NA	Intergenic	LTR12D|LTR|ERV1	14264	NM_032357	84317		NM_032357	ENSG00000136710	CCDC115	CDG2O|ccp1	coiled-coil domain containing 115	protein-coding
155336	chr22	38224651	38224750	+	0	NA	promoter-TSS (NR_132774)	promoter-TSS (NR_132774)	20	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
156864	chr22	42076471	42076630	+	0	NA	intron (NM_001002034, intron 2 of 2)	AluSq2|SINE|Alu	2302	NM_001002034	150368		NM_001002034	ENSG00000177096	PHETA2	FAM109B|IPIP27B|Ses2	PH domain containing endocytic trafficking adaptor 2	protein-coding
88929	chr16	87828801	87829000	+	0	NA	Intergenic	Intergenic	5760	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
204304	chr7	2688221	2689380	+	0	NA	intron (NM_001321766, intron 1 of 6)	intron (NM_001321766, intron 1 of 6)	598	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
106018	chr18	8052121	8052580	+	0	NA	intron (NM_001378146, intron 3 of 29)	Tigger3a|DNA|TcMar-Tigger	105475	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
925	chr1	1711071	1711480	+	0	NA	intron (NR_132739, intron 6 of 19)	L1M4c|LINE|L1	11336	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
18974	chr1	169091001	169091200	+	0	NA	Intergenic	Intergenic	-4095	NR_104091	101978719		NR_104091	ENSG00000203601	LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
4432	chr1	21281371	21281730	+	0	NA	intron (NM_001397, intron 2 of 18)	intron (NM_001397, intron 2 of 18)	-1935	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
233078	chr9	137098571	137098730	+	0	NA	intron (NM_016219, intron 5 of 12)	intron (NM_016219, intron 5 of 12)	11665	NR_045721	11253		NM_016219	ENSG00000177239	MAN1B1	ERMAN1|ERManI|MANA-ER|MRT15	mannosidase alpha class 1B member 1	protein-coding
222476	chr8	140256571	140256730	+	0	NA	intron (NR_164662, intron 14 of 22)	intron (NR_164662, intron 14 of 22)	-156115	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
210285	chr7	99423051	99423350	+	0	NA	intron (NM_015545, intron 7 of 7)	(CTGCC)n|Simple_repeat|Simple_repeat	14028	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
206970	chr7	38306871	38307430	+	0	NA	Intergenic	(GCTGAG)n|Simple_repeat|Simple_repeat	-33503	NM_001003806	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
207265	chr7	43931201	43931700	+	0	NA	intron (NM_015983, intron 1 of 6)	AluJb|SINE|Alu	5014	NM_015983	51619		NM_015983	ENSG00000078967	UBE2D4	HBUCE1	ubiquitin conjugating enzyme E2 D4 (putative)	protein-coding
149505	chr21	32615051	32615580	+	0	NA	Intergenic	L1MA4A|LINE|L1	-2444	NM_001350335	56683		NM_017835	ENSG00000159079	CFAP298	C21orf48|C21orf59|CILD26|DNAAF16|FBB18|Kur	cilia and flagella associated protein 298	protein-coding
114530	chr19	12835301	12835800	+	0	NA	promoter-TSS (NM_001270440)	promoter-TSS (NM_001270440)	-122	NM_031429	83546		NM_031429	ENSG00000132026	RTBDN	-	retbindin	protein-coding
204031	chr7	1929601	1929850	+	0	NA	intron (NM_001304524, intron 15 of 16)	CpG	10846	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
4765	chr1	23529551	23530020	+	0	NA	intron (NM_004091, intron 1 of 6)	MIR3|SINE|MIR	1448	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
41137	chr11	65582821	65583080	+	0	NA	exon (NM_001099409, exon 9 of 19)	exon (NM_001099409, exon 9 of 19)	6897	NM_001099409	254102		NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1 like 1	protein-coding
161857	chr3	45806171	45806350	+	0	NA	Intergenic	Intergenic	-9724	NM_020208	54716		NM_020208	ENSG00000163817	SLC6A20	IMINO|SIT1|XT3|Xtrp3	solute carrier family 6 member 20	protein-coding
72832	chr15	40130071	40130230	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-21271	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
163666	chr3	52223901	52224300	+	0	NA	exon (NM_017442, exon 2 of 2)	exon (NM_017442, exon 2 of 2)	2063	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
73352	chr15	42206521	42206780	+	0	NA	intron (NM_001301138, intron 1 of 25)	intron (NM_001301138, intron 1 of 25)	1654	NM_001301138	23339		NM_015289	ENSG00000166887	VPS39	TLP|VAM6|hVam6p	VPS39 subunit of HOPS complex	protein-coding
190155	chr5	178120501	178122000	+	0	NA	exon (NM_015111, exon 4 of 5)	exon (NM_015111, exon 4 of 5)	7718	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
22792	chr1	224436201	224436700	+	0	NA	intron (NM_001322303, intron 1 of 5)	intron (NM_001322303, intron 1 of 5)	1601	NR_136293	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
144896	chr20	36937771	36938200	+	0	NA	intron (NM_001363733, intron 3 of 15)	AluJb|SINE|Alu	13723	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
227828	chr9	93452901	93454400	+	0	NA	promoter-TSS (NR_136231)	promoter-TSS (NR_136231)	-49	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
213492	chr7	139053371	139053530	+	0	NA	intron (NM_020119, intron 12 of 12)	intron (NM_020119, intron 12 of 12)	-9293	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
75766	chr15	68578271	68579000	+	0	NA	promoter-TSS (NM_006091)	promoter-TSS (NM_006091)	-358	NM_006091	10391		NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
97300	chr17	43216751	43217050	+	0	NA	intron (NM_001291586, intron 7 of 8)	intron (NM_001291586, intron 7 of 8)	5025	NM_001291586	113277		NM_145041	ENSG00000184988	TMEM106A	-	transmembrane protein 106A	protein-coding
130804	chr2	86952051	86952150	+	0	NA	intron (NM_001382344, intron 2 of 22)	AluJo|SINE|Alu	9982	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
211472	chr7	105104501	105105580	+	0	NA	intron (NM_182931, intron 17 of 26)	AluJr|SINE|Alu	90835	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
186207	chr5	134368071	134368230	+	0	NA	promoter-TSS (NM_001113575)	promoter-TSS (NM_001113575)	-979	NM_001113575	51265		NM_016508	ENSG00000006837	CDKL3	NKIAMRE	cyclin dependent kinase like 3	protein-coding
115597	chr19	16033671	16033930	+	0	NA	promoter-TSS (NR_024335)	promoter-TSS (NR_024335)	87	NR_024335	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
155517	chr22	38689801	38690000	+	0	NA	intron (NM_014876, intron 2 of 4)	intron (NM_014876, intron 2 of 4)	7943	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
199126	chr6	111703071	111703230	+	0	NA	intron (NM_001370529, intron 5 of 11)	(CA)n|Simple_repeat|Simple_repeat	55981	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
141923	chr20	1150001	1150400	+	0	NA	intron (NM_178578, intron 5 of 7)	Charlie1a|DNA|hAT-Charlie	31598	NM_001323410	9491		NM_006814	ENSG00000125818	PSMF1	PI31	proteasome inhibitor subunit 1	protein-coding
41339	chr11	65922501	65922700	+	0	NA	Intergenic	FRAM|SINE|Alu	3174	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
230380	chr9	128082571	128082730	+	0	NA	intron (NM_001006641, intron 1 of 9)	AluSx|SINE|Alu	-8814	NM_001006642	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
45331	chr11	118216101	118216400	+	0	NA	intron (NM_001098526, intron 1 of 9)	AluY|SINE|Alu	-3304	NM_153206	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
122424	chr19	49462551	49462650	+	0	NA	exon (NM_153329, exon 8 of 17)	exon (NM_153329, exon 8 of 17)	9375	NM_001145396	126133		NM_153329	ENSG00000161618	ALDH16A1	-	aldehyde dehydrogenase 16 family member A1	protein-coding
107631	chr18	48945571	48945730	+	0	NA	intron (NM_005904, intron 2 of 3)	intron (NM_005904, intron 2 of 3)	-2843	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
52867	chr12	57158771	57158930	+	0	NA	intron (NM_002332, intron 11 of 88)	intron (NM_002332, intron 11 of 88)	-11231	NR_131939	105751187		NR_131938	ENSG00000259125	LRP1-AS	-	LRP1 antisense RNA	ncRNA
1662	chr1	3889671	3890360	+	0	NA	exon (NM_207356, exon 4 of 4)	exon (NM_207356, exon 4 of 4)	10257	NM_207356	339448		NM_207356	ENSG00000198912	C1orf174	-	chromosome 1 open reading frame 174	protein-coding
128755	chr2	62198801	62199100	+	0	NA	intron (NM_006577, intron 1 of 1)	AluSx1|SINE|Alu	2835	NM_006577	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
93120	chr17	17698151	17698650	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	16942	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
62206	chr13	98447751	98448250	+	0	NA	3' UTR (NM_001032296, exon 11 of 11)	3' UTR (NM_001032296, exon 11 of 11)	74125	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
149932	chr21	36288501	36290030	+	0	NA	intron (NM_001320714, intron 35 of 36)	intron (NM_001320714, intron 35 of 36)	-30924	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
17146	chr1	156192351	156192850	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1504	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
239431	chrY	56690921	56691330	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-263130	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
104880	chr17	81873951	81874430	+	0	NA	Intergenic	AluSp|SINE|Alu	-2853	NM_001301240	396		NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
9636	chr1	52550471	52550830	+	0	NA	intron (NM_015269, intron 1 of 29)	AluJo|SINE|Alu	2440	NM_015269	23318		NM_015269	ENSG00000134744	TUT4	PAPD3|TENT3A|ZCCHC11	terminal uridylyl transferase 4	protein-coding
123113	chr19	51689851	51689950	+	0	NA	intron (NM_001316994, intron 1 of 8)	intron (NM_001316994, intron 1 of 8)	518	NM_001316994	147650		NM_207324	ENSG00000182310	SPACA6	LET7EH|LINC00085|NCRNA00085|SPACA6P	sperm acrosome associated 6	protein-coding
148222	chr20	63589771	63589930	+	0	NA	3' UTR (NM_012384, exon 10 of 10)	3' UTR (NM_012384, exon 10 of 10)	-15611	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
130037	chr2	74418351	74418650	+	0	NA	promoter-TSS (NM_001145054)	promoter-TSS (NM_001145054)	-783	NM_001145054	388963		NM_001145054	ENSG00000284308	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
118863	chr19	38652651	38653580	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	5466	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
200039	chr6	129711151	129711250	+	0	NA	Intergenic	Intergenic	-1023	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
161351	chr3	40386821	40387300	+	0	NA	promoter-TSS (NM_001291960)	promoter-TSS (NM_001291960)	-124	NM_001248	956		NM_001248	ENSG00000168032	ENTPD3	CD39L3|HB6|NTPDase-3	ectonucleoside triphosphate diphosphohydrolase 3	protein-coding
231098	chr9	129801271	129801930	+	0	NA	Intergenic	L2b|LINE|L2	-1543	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
166274	chr3	112482421	112483230	+	0	NA	intron (NM_001085357, intron 1 of 3)	intron (NM_001085357, intron 1 of 3)	16647	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
142958	chr20	19543071	19543430	+	0	NA	intron (NM_020689, intron 3 of 16)	intron (NM_020689, intron 3 of 16)	-215008	NM_001378238	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
14285	chr1	143777851	143778680	+	0	NA	Intergenic	MER66C|LTR|ERV1	-14230	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
87464	chr16	71485971	71486130	+	0	NA	intron (NM_006961, intron 1 of 5)	MLT1D|LTR|ERVL-MaLR	3274	NM_006961	7567		NM_006961	ENSG00000157429	ZNF19	KOX12	zinc finger protein 19	protein-coding
193339	chr6	30207051	30207650	+	0	NA	intron (NM_003449, intron 1 of 9).3	L2a|LINE|L2	6056	NM_003449	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
23257	chr1	227869871	227870380	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	54408	NM_183062	339501		NM_183062	ENSG00000185888	PRSS38	MPN2	serine protease 38	protein-coding
46048	chr11	122697521	122698500	+	0	NA	intron (NM_032873, intron 1 of 13)	MIRb|SINE|MIR	42288	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
57024	chr12	120677721	120678050	+	0	NA	Intergenic	Intergenic	-9264	NM_014730	9761		NM_014730	ENSG00000110917	MLEC	KIAA0152	malectin	protein-coding
230234	chr9	127875071	127875430	+	0	NA	intron (NM_001318121, intron 1 of 6)	intron (NM_001318121, intron 1 of 6)	-1770	NM_001318122	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
178901	chr4	158254321	158254580	+	0	NA	3' UTR (NM_018342, exon 13 of 13)	3' UTR (NM_018342, exon 13 of 13)	43964	NM_018342	55314		NM_018342	ENSG00000164124	TMEM144	SLC35G7	transmembrane protein 144	protein-coding
211565	chr7	105652321	105652660	+	0	NA	intron (NM_001318229, intron 3 of 9)	intron (NM_001318229, intron 3 of 9)	26665	NM_001318229	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
155760	chr22	39224451	39224950	+	0	NA	3' UTR (NM_002608, exon 7 of 7)	3' UTR (NM_002608, exon 7 of 7)	16209	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
225525	chr9	35737701	35737900	+	0	NA	TTS (NM_006368)	TTS (NM_006368)	4878	NR_106912	102466201		NR_106912	ENSG00000273945	MIR6853	hsa-mir-6853	microRNA 6853	ncRNA
145490	chr20	43926451	43926700	+	0	NA	intron (NM_001098796, intron 1 of 8)	intron (NM_001098796, intron 1 of 8)	10445	NM_001098796	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
233162	chr9	137178201	137178400	+	0	NA	intron (NM_013366, intron 10 of 12)	intron (NM_013366, intron 10 of 12)	-6244	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
142608	chr20	5592721	5594230	+	0	NA	intron (NM_019593, intron 3 of 19)	intron (NM_019593, intron 3 of 19)	17531	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
184318	chr5	96920871	96921030	+	0	NA	Intergenic	Intergenic	-15130	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
100932	chr17	64475551	64476500	+	0	NA	Intergenic	AluSx1|SINE|Alu	21029	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
155491	chr22	38531851	38532430	+	0	NA	intron (NM_007068, intron 12 of 13)	intron (NM_007068, intron 12 of 13)	-25829	NM_001098504	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
115411	chr19	15292751	15293600	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-12724	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
145761	chr20	45313101	45313530	+	0	NA	intron (NM_014276, intron 6 of 11)	(CTAACC)n|Simple_repeat|Simple_repeat	-4786	NM_003833	8785		NM_003833	ENSG00000124159	MATN4	-	matrilin 4	protein-coding
47492	chr12	3974101	3975430	+	0	NA	Intergenic	AluSg7|SINE|Alu	-101317	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
196988	chr6	53284621	53285280	+	0	NA	intron (NM_001242830, intron 3 of 6)	Tigger1|DNA|TcMar-Tigger	7957	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
163283	chr3	50318721	50319700	+	0	NA	intron (NM_003773, intron 2 of 3)	intron (NM_003773, intron 2 of 3)	3535	NM_003773	8692		NM_003773	ENSG00000068001	HYAL2	LUCA2	hyaluronidase 2	protein-coding
19688	chr1	181024921	181025780	+	0	NA	Intergenic	Intergenic	-2229	NM_001286210	10228		NM_005819	ENSG00000135823	STX6	-	syntaxin 6	protein-coding
3659	chr1	16407951	16409080	+	0	NA	intron (NM_001353349, intron 5 of 10)	intron (NM_001353349, intron 5 of 10)	28909	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
220445	chr8	100315971	100316900	+	0	NA	intron (NM_001280539, intron 1 of 10)	LTR12C|LTR|ERV1	-6482	NM_183419	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
178651	chr4	152447101	152447500	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	42116	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
58751	chr12	132614771	132615700	+	0	NA	Intergenic	Intergenic	-3541	NM_174873	22953		NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	purinergic receptor P2X 2	protein-coding
163912	chr3	52538021	52538480	+	0	NA	intron (NM_001124767, intron 1 of 1)	intron (NM_001124767, intron 1 of 1)	1645	NM_001124767	440957		NM_001124767	ENSG00000168273	UQCC5	C3orf78|SMIM4	ubiquinol-cytochrome c reductase complex assembly factor 5	protein-coding
187093	chr5	140293201	140293400	+	0	NA	intron (NM_002622, intron 2 of 3)	intron (NM_002622, intron 2 of 3)	9801	NM_002622	5201		NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
203802	chr7	1273951	1274400	+	0	NA	Intergenic	Intergenic	41303	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
213985	chr7	142812521	142813080	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	41830	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
168562	chr3	148947101	148947530	+	0	NA	Intergenic	Intergenic	-44093	NM_001184721	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
237707	chrX	124395201	124396030	+	0	NA	intron (NM_001163279, intron 27 of 31)	intron (NM_001163279, intron 27 of 31)	49052	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
107709	chr18	49690351	49690650	+	0	NA	Intergenic	L1MC4a|LINE|L1	123033	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
6207	chr1	27472171	27472330	+	0	NA	intron (NM_006990, intron 1 of 8)	AluSg|SINE|Alu	17917	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
4409	chr1	21180501	21181050	+	0	NA	Intergenic	AluJb|SINE|Alu	-3878	NM_001198802	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
130210	chr2	84651321	84651780	+	0	NA	intron (NM_001370, intron 33 of 76)	L1MDa|LINE|L1	135052	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
27089	chr10	27319671	27320100	+	0	NA	intron (NR_138082, intron 4 of 4)	CpG	61123	NR_138082	101060171		NR_138082		ODAD2P1	ARMC4P1	outer dynein arm docking complex subunit 2 pseudogene 1	pseudo
225847	chr9	38068611	38069900	+	0	NA	promoter-TSS (NM_003028)	promoter-TSS (NM_003028)	-28	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
185689	chr5	131810901	131811130	+	0	NA	intron (NM_001303622, intron 12 of 12)	intron (NM_001303622, intron 12 of 12)	-13998	NM_001346114	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
32872	chr10	110085571	110086800	+	0	NA	intron (NM_016824, intron 1 of 14)	AluSc|SINE|Alu	65795	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
193033	chr6	28462501	28462730	+	0	NA	Intergenic	LTR79|LTR|ERVL	-19124	NM_001012455	222696		NM_001012455	ENSG00000187987	ZSCAN23	ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1	zinc finger and SCAN domain containing 23	protein-coding
51779	chr12	53343651	53344310	+	0	NA	intron (NM_001300837, intron 1 of 2)	AluSz6|SINE|Alu	813	NM_001300837	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
55771	chr12	108571521	108571780	+	0	NA	Intergenic	Intergenic	9054	NM_213595	23479		NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
89237	chr16	88638951	88639200	+	0	NA	exon (NM_013278, exon 2 of 3)	exon (NM_013278, exon 2 of 3)	503	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
198782	chr6	108874171	108875350	+	0	NA	intron (NM_001286609, intron 3 of 16)	MIRb|SINE|MIR	26338	NM_032131	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
171937	chr4	880821	881200	+	0	NA	intron (NM_001318134, intron 12 of 24)	intron (NM_001318134, intron 12 of 24)	51306	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
169744	chr3	172516601	172517330	+	0	NA	TTS (NM_001190943)	TTS (NM_001190943)	6465	NM_001190943	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
50933	chr12	49347521	49348100	+	0	NA	5' UTR (NM_001304944, exon 2 of 4)	5' UTR (NM_001304944, exon 2 of 4)	922	NM_001304944	79962		NM_024902	ENSG00000178401	DNAJC22	wus	DnaJ heat shock protein family (Hsp40) member C22	protein-coding
178378	chr4	146521581	146523250	+	0	NA	promoter-TSS (NM_001029998)	promoter-TSS (NM_001029998)	-444	NM_032128	84068		NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7|SSASKS	solute carrier family 10 member 7	protein-coding
123736	chr19	55060971	55061330	+	0	NA	intron (NM_138412, intron 2 of 7).5	AluSx3|SINE|Alu	1998	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
187399	chr5	141913471	141913630	+	0	NA	Intergenic	Intergenic	-10321	NM_001142603	9812		NM_014773	ENSG00000081791	DELE1	DELE|DELE1(L)|KIAA0141	DAP3 binding cell death enhancer 1	protein-coding
79693	chr16	1288851	1289850	+	0	NA	Intergenic	Intergenic	-19802	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
91013	chr17	2795751	2797380	+	0	NA	exon (NM_015085, exon 1 of 25)	exon (NM_015085, exon 1 of 25)	127	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
222449	chr8	138727271	138727630	+	0	NA	intron (NM_152888, intron 23 of 64)	L2b|LINE|L2	186591	NM_152888	169044		NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
26479	chr10	17671051	17671350	+	0	NA	intron (NM_001324287, intron 2 of 11)	intron (NM_001324287, intron 2 of 11)	27049	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
34548	chr10	133041921	133042380	+	0	NA	Intergenic	Intergenic	44547	NR_111905	100128127		NR_111905		ADGRA1-AS1	GPR123-AS1	ADGRA1 antisense RNA 1	ncRNA
85133	chr16	36072351	36072450	+	0	NA	Intergenic	L1PA2|LINE|L1	325848	NR_033985	400533		NR_033985	ENSG00000261122	LINC02167	-	long intergenic non-protein coding RNA 2167	ncRNA
185560	chr5	131372651	131372750	+	0	NA	intron (NM_001038702, intron 2 of 4)	AluSc8|SINE|Alu	108647	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
191712	chr6	13677951	13678530	+	0	NA	intron (NM_005493, intron 2 of 13)	intron (NM_005493, intron 2 of 13)	33595	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
124256	chr19	57632871	57634230	+	0	NA	intron (NM_198855, intron 1 of 2)	CpG	382	NM_001265599	10520		NM_006385	ENSG00000121417	ZNF211	C2H2-25|CH2H2-25|ZNF-25	zinc finger protein 211	protein-coding
137135	chr2	191038201	191039130	+	0	NA	intron (NM_003151, intron 16 of 23)	intron (NM_003151, intron 16 of 23)	17139	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
30489	chr10	79266101	79267350	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-80744	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
40417	chr11	64163471	64164200	+	0	NA	intron (NM_014067, intron 1 of 10)	intron (NM_014067, intron 1 of 10)	2278	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
169643	chr3	171428271	171428730	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	31905	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
148197	chr20	63557701	63558150	+	0	NA	TTS (NM_001037335)	TTS (NM_001037335)	3766	NM_001319152	79025		NM_024059	ENSG00000125531	FNDC11	C20orf195	fibronectin type III domain containing 11	protein-coding
206699	chr7	36510971	36511400	+	0	NA	Intergenic	AluJb|SINE|Alu	88935	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
78266	chr15	90851051	90851700	+	0	NA	Intergenic	Intergenic	-17213	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
4099	chr1	19220321	19220580	+	0	NA	intron (NM_001271428, intron 21 of 22)	L2a|LINE|L2	10064	NR_135115	101927895		NR_135114	ENSG00000230424	EMC1-AS1	-	EMC1 antisense RNA 1	ncRNA
136697	chr2	181132621	181132980	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	8963	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
161678	chr3	43363671	43364030	+	0	NA	Intergenic	Intergenic	-11888	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
49930	chr12	39687971	39688130	+	0	NA	intron (NR_135051, intron 10 of 18)	L2c|LINE|L2	61867	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
134833	chr2	148642571	148642730	+	0	NA	Intergenic	MIRb|SINE|MIR	-2101	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
98169	chr17	46084401	46084600	+	0	NA	intron (NM_015443, intron 3 of 14).2	AluSq2|SINE|Alu	85250	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
168475	chr3	143167851	143168150	+	0	NA	Intergenic	Intergenic	48229	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
82754	chr16	21417821	21418580	+	0	NA	intron (NM_130464, intron 2 of 12)	AluYa5|SINE|Alu	7178	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
55948	chr12	109995501	109997080	+	0	NA	promoter-TSS (NM_001330153)	promoter-TSS (NM_001330153)	78	NM_014776	9815		NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
54033	chr12	75655301	75655700	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-143891	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
80841	chr16	3494401	3494880	+	0	NA	exon (NM_001353385, exon 2 of 3)	exon (NM_001353385, exon 2 of 3)	849	NM_001080524	646174		NM_001080524	ENSG00000215131	C16orf90	-	chromosome 16 open reading frame 90	protein-coding
211104	chr7	102506771	102506950	+	0	NA	intron (NM_001367767, intron 4 of 20)	intron (NM_001367767, intron 4 of 20)	10917	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
170148	chr3	183490651	183490950	+	0	NA	3' UTR (NM_130446, exon 7 of 7)	3' UTR (NM_130446, exon 7 of 7)	36986	NR_145763	109617007		NR_145763	ENSG00000199363	SNORA63E	-	small nucleolar RNA, H/ACA box 63E	snoRNA
221151	chr8	119768921	119769200	+	0	NA	intron (NM_003184, intron 18 of 25)	L1PA15-16|LINE|L1	63781	NM_003184	6873		NM_003184	ENSG00000064313	TAF2	CIF150|MRT40|TAF2B|TAFII150	TATA-box binding protein associated factor 2	protein-coding
229692	chr9	124656771	124657130	+	0	NA	intron (NM_033334, intron 2 of 9)	L1MB3|LINE|L1	-1486	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
185717	chr5	132054551	132055200	+	0	NA	Intergenic	Intergenic	-5780	NM_000588	3562		NM_000588	ENSG00000164399	IL3	IL-3|MCGF|MULTI-CSF	interleukin 3	protein-coding
63349	chr13	114029301	114030950	+	0	NA	intron (NM_001320822, intron 4 of 23).2	intron (NM_001320822, intron 4 of 23).2	47830	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
2766	chr1	10697151	10697650	+	0	NA	intron (NM_017766, intron 3 of 15)	intron (NM_017766, intron 3 of 15)	99246	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
200333	chr6	133923951	133924330	+	0	NA	Intergenic	Intergenic	-28030	NM_001253676	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
33897	chr10	124474701	124474900	+	0	NA	intron (NM_001167880, intron 1 of 5)	intron (NM_001167880, intron 1 of 5)	12977	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
80148	chr16	2089901	2090100	+	0	NA	TTS (NM_000548)	TTS (NM_000548)	284	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
202035	chr6	152999351	153000050	+	0	NA	intron (NM_001301872, intron 1 of 1)	THE1B|LTR|ERVL-MaLR	3009	NM_001301047	54516		NM_019041	ENSG00000112031	MTRF1L	HMRF1L|MRF1L|mtRF1a	mitochondrial translation release factor 1 like	protein-coding
231066	chr9	129643601	129644000	+	0	NA	Intergenic	Intergenic	-1631	NM_001202403	140459		NM_017873	ENSG00000148331	ASB6	-	ankyrin repeat and SOCS box containing 6	protein-coding
99984	chr17	57662921	57663250	+	0	NA	intron (NM_138962, intron 11 of 13)	intron (NM_138962, intron 11 of 13)	-54673	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
196549	chr6	44066051	44066150	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	8552	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
78791	chr15	99442101	99442700	+	0	NA	Intergenic	Intergenic	-123017	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
10259	chr1	64469551	64470610	+	0	NA	promoter-TSS (NM_020925)	promoter-TSS (NM_020925)	-49	NM_020925	57685		NM_020925	ENSG00000158966	CACHD1	-	cache domain containing 1	protein-coding
168766	chr3	151268621	151269480	+	0	NA	intron (NM_014879, intron 1 of 2)	intron (NM_014879, intron 1 of 2)	9492	NM_014879	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
52179	chr12	54305401	54305830	+	0	NA	Intergenic	AluJb|SINE|Alu	-4578	NM_001261461	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
90383	chr17	1269651	1269830	+	0	NA	promoter-TSS (NM_001164405)	promoter-TSS (NM_001164405)	-704	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
152871	chr22	22464021	22464300	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	44582	NR_130643	140883		NM_080764	ENSG00000275004	ZNF280B	5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632	zinc finger protein 280B	protein-coding
224490	chr9	16871601	16872000	+	0	NA	Intergenic	CpG-28117	-1130	NM_017637	54796		NM_017637	ENSG00000173068	BNC2	BSN2|LUTO|bn2	basonuclin zinc finger protein 2	protein-coding
144525	chr20	35708421	35708750	+	0	NA	intron (NM_184234, intron 13 of 16)	intron (NM_184234, intron 13 of 16)	9180	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
60753	chr13	44868471	44868630	+	0	NA	Intergenic	Intergenic	-58920	NR_038433	144817		NR_038433	ENSG00000235097	LINC00330	NCRNA00330	long intergenic non-protein coding RNA 330	ncRNA
96081	chr17	39606701	39607550	+	0	NA	intron (NM_006160, intron 1 of 1)	CpG	795	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
197000	chr6	53307001	53308050	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	30092	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
198586	chr6	107657771	107658730	+	0	NA	3' UTR (NM_018013, exon 7 of 7)	3' UTR (NM_018013, exon 7 of 7)	73900	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
188045	chr5	149830051	149830150	+	0	NA	intron (NM_001172699, intron 3 of 10)	intron (NM_001172699, intron 3 of 10)	58160	NM_001172699	133522		NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
209324	chr7	76166401	76167650	+	0	NA	Intergenic	CpG	-34871	NM_001291831	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
226943	chr9	79630901	79631980	+	0	NA	intron (NM_001351547, intron 5 of 18)	intron (NM_001351547, intron 5 of 18)	58263	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
28831	chr10	62376371	62376530	+	0	NA	exon (NM_014951, exon 2 of 5)	exon (NM_014951, exon 2 of 5)	-1323	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
140043	chr2	231245701	231246030	+	0	NA	intron (NR_148040, intron 9 of 21)	L4_A_Mam|LINE|RTE-X	47234	NM_001352755	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
95857	chr17	38839771	38840450	+	0	NA	intron (NM_001080465, intron 1 of 2)	intron (NM_001080465, intron 1 of 2)	1328	NM_001080465	388381		NM_001080465	ENSG00000275489	SPMAP1	C17orf98	sperm microtubule associated protein 1	protein-coding
191831	chr6	14858871	14859230	+	0	NA	Intergenic	MIR|SINE|MIR	-387019	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
138332	chr2	203811301	203812130	+	0	NA	Intergenic	L2|LINE|L2	-56056	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
123532	chr19	54325261	54325930	+	0	NA	Intergenic	Intergenic	-12429	NM_181985	353514		NM_021250	ENSG00000187116	LILRA5	CD85|CD85F|ILT-11|ILT11|LILRB7|LIR-9|LIR9	leukocyte immunoglobulin like receptor A5	protein-coding
210102	chr7	97845651	97845830	+	0	NA	Intergenic	Intergenic	26425	NM_001178077	440		NM_001673	ENSG00000070669	ASNS	ASNSD|TS11	asparagine synthetase (glutamine-hydrolyzing)	protein-coding
187520	chr5	142432071	142433380	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	107432	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
190613	chr5	181181821	181182380	+	0	NA	Intergenic	Intergenic	9808	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
97471	chr17	43769171	43769530	+	0	NA	3' UTR (NM_004090, exon 3 of 3)	3' UTR (NM_004090, exon 3 of 3)	9627	NM_004090	1845		NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
28138	chr10	43440171	43440330	+	0	NA	intron (NM_001355444, intron 1 of 3)	AluSq|SINE|Alu	3139	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
142870	chr20	17678471	17678630	+	0	NA	intron (NM_004587, intron 1 of 24)	MADE2|DNA|TcMar-Mariner	3692	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
29264	chr10	69129851	69130150	+	0	NA	intron (NM_001318946, intron 1 of 7)	intron (NM_001318946, intron 1 of 7)	5822	NM_001318944	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
191516	chr6	11343051	11343550	+	0	NA	intron (NR_073131, intron 1 of 9)	AluSx3|SINE|Alu	39048	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
224761	chr9	21970271	21970430	+	0	NA	intron (NM_001195132, intron 2 of 3)	intron (NM_001195132, intron 2 of 3)	3211	NR_024274	51198		NM_016349		CDKN2A-AS1	C9orf53|CDKN2A-DT|bA149I2.3	CDKN2A antisense RNA 1	ncRNA
85705	chr16	56604671	56605250	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-3624	NM_005953	4502		NM_005953	ENSG00000125148	MT2A	MT-2|MT-II|MT2	metallothionein 2A	protein-coding
232550	chr9	136349471	136350030	+	0	NA	exon (NM_001145638, exon 11 of 14)	exon (NM_001145638, exon 11 of 14)	-3307	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
142345	chr20	3747051	3747350	+	0	NA	intron (NM_001197327, intron 7 of 12)	intron (NM_001197327, intron 7 of 12)	14515	NM_001197327	116835		NM_052970	ENSG00000132622	HSPA12B	C20orf60	heat shock protein family A (Hsp70) member 12B	protein-coding
166992	chr3	125919151	125919450	+	0	NA	intron (NR_024251, intron 2 of 4)	intron (NR_024251, intron 2 of 4)	2699	NR_024250	100125556		NR_024250	ENSG00000291071	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
24201	chr1	236063751	236063850	+	0	NA	intron (NM_002508, intron 1 of 19)	FRAM|SINE|Alu	1290	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
81154	chr16	4415511	4417680	+	0	NA	promoter-TSS (NM_001201472).2	promoter-TSS (NM_001201472).2	1	NM_001201479	100529144		NM_001201479	ENSG00000103426	CORO7-PAM16	CORO7|Coronin-7|Crn7	CORO7-PAM16 readthrough	protein-coding
214963	chr7	151873471	151873930	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-3342	NR_038926	100505483		NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	ncRNA
197281	chr6	70717121	70717710	+	0	NA	intron (NM_001281440, intron 1 of 10)	L1M3de|LINE|L1	48885	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
115579	chr19	15843101	15843630	+	0	NA	Intergenic	L1MA8|LINE|L1	14418	NR_015379	652995		NR_015379	ENSG00000214049	UCA1	CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36	urothelial cancer associated 1	ncRNA
78982	chr15	101651721	101653180	+	0	NA	promoter-TSS (NM_078474)	promoter-TSS (NM_078474)	-59	NM_001307960	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
163859	chr3	52489921	52490650	+	0	NA	intron (NM_007184, intron 18 of 20)	intron (NM_007184, intron 18 of 20)	-5053	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
208980	chr7	74207701	74208300	+	0	NA	Intergenic	Intergenic	-2006	NM_032464	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
45639	chr11	118979471	118979700	+	0	NA	exon (NM_181721, exon 4 of 6)	exon (NM_181721, exon 4 of 6)	7824	NM_181721	283150		NM_181721	ENSG00000176302	FOXR1	DLNB13|FOXN5	forkhead box R1	protein-coding
41631	chr11	66473251	66473550	+	0	NA	TTS (NR_120586)	TTS (NR_120586)	6495	NM_145065	246330		NM_145065	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
122209	chr19	48964801	48966680	+	0	NA	intron (NM_000146, intron 1 of 3)	CpG	431	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
86440	chr16	66918771	66919330	+	0	NA	promoter-TSS (NM_004062)	promoter-TSS (NM_004062)	-165	NM_001204746	1014		NM_004062	ENSG00000166589	CDH16	-	cadherin 16	protein-coding
216741	chr8	22454651	22454750	+	0	NA	intron (NM_005605, intron 1 of 13)	Tigger3b|DNA|TcMar-Tigger	13622	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
82046	chr16	12532821	12533400	+	0	NA	intron (NM_032167, intron 20 of 20)	intron (NM_032167, intron 20 of 20)	-187211	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
109043	chr18	79751001	79751230	+	0	NA	intron (NM_004715, intron 12 of 12)	intron (NM_004715, intron 12 of 12)	69685	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
59334	chr13	24539571	24539930	+	0	NA	non-coding (NR_158455, exon 2 of 2)	non-coding (NR_158455, exon 2 of 2)	1970	NR_158455	105370295		NR_158453	ENSG00000287376	LOC105370295	-	uncharacterized LOC105370295	ncRNA
126193	chr2	26770901	26771450	+	0	NA	intron (NM_017877, intron 1 of 5)	intron (NM_017877, intron 1 of 5)	6891	NM_017877	54978		NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
170239	chr3	184197701	184197900	+	0	NA	Intergenic	MIR|SINE|MIR	11725	NM_001351299	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
31942	chr10	100653121	100653380	+	0	NA	Intergenic	Intergenic	-82146	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
190714	chr6	284971	285230	+	0	NA	Intergenic	Intergenic	-6957	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
227104	chr9	85744921	85745180	+	0	NA	Intergenic	Intergenic	-3021	NM_015239	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
67855	chr14	74144751	74145080	+	0	NA	intron (NM_001024674, intron 5 of 5)	intron (NM_001024674, intron 5 of 5)	59959	NM_001372005	91750		NM_001024674	ENSG00000205659	LIN52	C14orf46|c14_5549	lin-52 DREAM MuvB core complex component	protein-coding
217151	chr8	26047771	26047930	+	0	NA	Intergenic	CpG-27103	-2437	NM_022659	64641		NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	EBF transcription factor 2	protein-coding
101078	chr17	64916621	64917430	+	0	NA	intron (NM_199340, intron 2 of 14)	AluY|SINE|Alu	2466	NM_199340	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
130128	chr2	74653671	74654800	+	0	NA	promoter-TSS (NM_004263)	promoter-TSS (NM_004263)	7	NM_001271662	10505		NM_004263	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	ssemaphorin 4F	protein-coding
201910	chr6	151378251	151378800	+	0	NA	intron (NM_020861, intron 1 of 2)	intron (NM_020861, intron 1 of 2)	13034	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
34306	chr10	132000801	132001000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18887	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
182173	chr5	56687871	56688430	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-81894	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
34455	chr10	132436001	132436680	+	0	NA	Intergenic	Intergenic	-8849	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
148179	chr20	63541521	63541780	+	0	NA	intron (NM_080823, intron 5 of 7)	intron (NM_080823, intron 5 of 7)	-4274	NM_005975	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
206677	chr7	36388451	36388940	+	0	NA	intron (NM_001100425, intron 1 of 6)	intron (NM_001100425, intron 1 of 6)	-1167	NM_001284301	54443		NM_018685	ENSG00000011426	ANLN	FSGS8|Scraps|scra	anillin, actin binding protein	protein-coding
136679	chr2	181105501	181105700	+	0	NA	Intergenic	Intergenic	-18237	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
161800	chr3	45329851	45330150	+	0	NA	Intergenic	Intergenic	-58576	NM_001368263	23395		NM_015340	ENSG00000011376	LARS2	HLASA|LEURS|PRLTS4|mtLeuRS	leucyl-tRNA synthetase 2, mitochondrial	protein-coding
18828	chr1	167670071	167670230	+	0	NA	intron (NM_001322923, intron 1 of 5)	MamTip2|DNA|hAT-Tip100	39918	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
474	chr1	1155451	1155550	+	0	NA	Intergenic	L1MEg|LINE|L1	-11604	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
203619	chr7	952621	952880	+	0	NA	intron (NM_001284308, intron 1 of 10)	intron (NM_001284308, intron 1 of 10)	1930	NM_006869	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
133617	chr2	126659261	126660500	+	0	NA	intron (NM_016815, intron 1 of 2)	AluSx4|SINE|Alu	3722	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
9030	chr1	44778201	44778400	+	0	NA	promoter-TSS (NR_001457)	promoter-TSS (NR_001457)	-90	NR_001457	94163		NR_001457	ENSG00000281859	SNORD38B	RNU38B|U38B	small nucleolar RNA, C/D box 38B	snoRNA
2104	chr1	8023271	8023800	+	0	NA	intron (NM_018948, intron 1 of 3)	AluJb|SINE|Alu	2774	NM_018948	54206		NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
27955	chr10	42092551	42092650	+	0	NA	Intergenic	Intergenic	275445	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
227472	chr9	91130851	91130980	+	0	NA	intron (NR_135306, intron 2 of 2)	L1MD3|LINE|L1	11853	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
126342	chr2	27378301	27379000	+	0	NA	exon (NM_001201459, exon 2 of 3)	exon (NM_001201459, exon 2 of 3)	1794	NM_001201459	130557		NM_144631	ENSG00000163795	ZNF513	HMFT0656|RP58|Zfp513	zinc finger protein 513	protein-coding
231232	chr9	129971501	129971700	+	0	NA	intron (NM_001363755, intron 4 of 15)	AluSx|SINE|Alu	71589	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
40650	chr11	64732951	64734250	+	0	NA	intron (NM_001098670, intron 12 of 16)	L1MEd|LINE|L1	-10403	NM_001376267	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
55537	chr12	105333201	105333400	+	0	NA	intron (NM_001145199, intron 1 of 5)	intron (NM_001145199, intron 1 of 5)	2609	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
120205	chr19	42289771	42290250	+	0	NA	intron (NM_001379484, intron 9 of 19)	intron (NM_001379484, intron 9 of 19)	5541	NM_015125	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
239223	chrY	12938071	12938730	+	0	NA	Intergenic	Intergenic	32695	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
164265	chr3	57563771	57564130	+	0	NA	TTS (NM_001322177)	TTS (NM_001322177)	7676	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
101934	chr17	74478571	74479680	+	0	NA	intron (NM_007261, intron 4 of 6)	L1ME4a|LINE|L1	12491	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
167304	chr3	128682951	128683050	+	0	NA	Intergenic	AluSq2|SINE|Alu	-32182	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
238933	chrX	154749701	154749900	+	0	NA	intron (NR_104114, intron 1 of 8)	intron (NR_104114, intron 1 of 8)	1277	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
172235	chr4	1338271	1338630	+	0	NA	exon (NM_001297432, exon 8 of 9)	exon (NM_001297432, exon 8 of 9)	-8758	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
63641	chr14	20873421	20874000	+	0	NA	Intergenic	Intergenic	-17693	NM_002935	6037		NM_002935	ENSG00000169397	RNASE3	ECP|RAF1|RNS3	ribonuclease A family member 3	protein-coding
18121	chr1	160724571	160725150	+	0	NA	Intergenic	Intergenic	-13009	NM_001256030	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
30037	chr10	73802571	73803630	+	0	NA	intron (NR_160744, intron 12 of 14)	intron (NR_160744, intron 12 of 14)	-1701	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
167031	chr3	126474931	126476980	+	0	NA	promoter-TSS (NM_001040653)	promoter-TSS (NM_001040653)	-36	NM_001040653	79364		NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
109349	chr19	617351	618050	+	0	NA	TTS (NM_001194)	TTS (NM_001194)	15837	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
219271	chr8	67405751	67406050	+	0	NA	intron (NR_136224, intron 1 of 4)	intron (NR_136224, intron 1 of 4)	62066	NR_136224	102724708		NR_136223		ARFGEF1-DT	-	ARFGEF1 divergent transcript	ncRNA
239347	chrY	19432951	19433450	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	69953	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
37673	chr11	27362021	27362280	+	0	NA	intron (NM_080654, intron 1 of 2)	L2b|LINE|L2	1065	NM_030771	91057		NM_030771	ENSG00000109881	CCDC34	L15|NY-REN-41|RAMA3|SPGF76	coiled-coil domain containing 34	protein-coding
144847	chr20	36888571	36888900	+	0	NA	intron (NM_080628, intron 5 of 6)	intron (NM_080628, intron 5 of 6)	12597	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
15230	chr1	149559851	149561030	+	0	NA	Intergenic	L1MEc|LINE|L1	-23383	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
157720	chr22	46499151	46499480	+	0	NA	intron (NM_001378328, intron 1 of 34)	L1ME3G|LINE|L1	38305	NM_014246	9620		NM_014246	ENSG00000075275	CELSR1	ADGRC1|CDHF9|FMI2|HFMI2|LMPHM9|ME2	cadherin EGF LAG seven-pass G-type receptor 1	protein-coding
210474	chr7	100153271	100153580	+	0	NA	TTS (NM_018275)	TTS (NM_018275)	3244	NR_039802	100616439		NR_039802	ENSG00000284518	MIR4658	-	microRNA 4658	ncRNA
227565	chr9	92139971	92140700	+	0	NA	Intergenic	Intergenic	-1132	NR_027341	158314		NR_027341		LINC00475	C9orf44	long intergenic non-protein coding RNA 475	ncRNA
114362	chr19	12363421	12363880	+	0	NA	5' UTR (NM_030824, exon 3 of 6)	5' UTR (NM_030824, exon 3 of 6)	2033	NM_001363774	79973		NM_030824	ENSG00000198342	ZNF442	-	zinc finger protein 442	protein-coding
30814	chr10	85603101	85603500	+	0	NA	intron (NM_017551, intron 15 of 15)	intron (NM_017551, intron 15 of 15)	25569	NR_038986	100507470		NR_038986	ENSG00000234942	GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
98877	chr17	48546651	48547450	+	0	NA	intron (NR_102279, intron 3 of 6)	intron (NR_102279, intron 3 of 6)	-2019	NM_002145	3212		NM_002145	ENSG00000173917	HOXB2	HOX2|HOX2H|Hox-2.8|K8	homeobox B2	protein-coding
168798	chr3	152196851	152197150	+	0	NA	intron (NR_136178, intron 1 of 2)	intron (NR_136178, intron 1 of 2)	8429	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
179403	chr4	183832351	183832450	+	0	NA	intron (NR_132761, intron 1 of 2)	intron (NR_132761, intron 1 of 2)	34378	NR_132761	56977		NM_020225	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
83462	chr16	27355401	27356080	+	0	NA	intron (NM_001257997, intron 6 of 9)	intron (NM_001257997, intron 6 of 9)	41766	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
53022	chr12	57552301	57552500	+	0	NA	intron (NM_001354705, intron 1 of 25)	intron (NM_001354705, intron 1 of 25)	2356	NM_004984	3798		NM_004984	ENSG00000155980	KIF5A	ALS25|D12S1889|MY050|NEIMY|NKHC|SPG10	kinesin family member 5A	protein-coding
44218	chr11	96330071	96330430	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-11188	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
59653	chr13	28423001	28423250	+	0	NA	intron (NM_002019, intron 10 of 29)	intron (NM_002019, intron 10 of 29)	72003	NM_002019	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
119455	chr19	40415971	40416530	+	0	NA	Intergenic	Intergenic	-2872	NM_181882	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
49774	chr12	31866471	31866830	+	0	NA	Intergenic	AluJo|SINE|Alu	20553	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
27437	chr10	31757121	31758500	+	0	NA	Intergenic	Intergenic	151116	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
187377	chr5	141861871	141862030	+	0	NA	TTS (NM_001278615)	TTS (NM_001278615)	4252	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
198807	chr6	109020001	109020500	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	-10695	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
34937	chr11	440001	440580	+	0	NA	intron (NM_001347882, intron 1 of 21)	L2c|LINE|L2	1721	NM_001347882	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
49615	chr12	27806701	27807480	+	0	NA	Intergenic	Intergenic	-26854	NM_001146221	100287284		NM_001146221	ENSG00000205693	MANSC4	-	MANSC domain containing 4	protein-coding
133789	chr2	127776071	127776430	+	0	NA	intron (NM_001006623, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	34921	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
203787	chr7	1242551	1243100	+	0	NA	Intergenic	CpG-25321	9953	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
140349	chr2	232633171	232634600	+	0	NA	exon (NM_025202, exon 1 of 4)	exon (NM_025202, exon 1 of 4)	281	NM_025202	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
147721	chr20	62381601	62382080	+	0	NA	Intergenic	Intergenic	-5263	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
68931	chr14	91380401	91381330	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	36955	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
43494	chr11	78419871	78420850	+	0	NA	Intergenic	Intergenic	-2540	NM_080491	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
237882	chrX	131128651	131128750	+	0	NA	Intergenic	L1PA3|LINE|L1	46265	NM_001330651	158763		NM_144967	ENSG00000147256	ARHGAP36	-	Rho GTPase activating protein 36	protein-coding
176388	chr4	88672851	88673250	+	0	NA	intron (NM_001375479, intron 17 of 25)	intron (NM_001375479, intron 17 of 25)	24779	NM_153757	266812		NM_153757	ENSG00000177432	NAP1L5	DRLM	nucleosome assembly protein 1 like 5	protein-coding
65616	chr14	52270351	52270950	+	0	NA	intron (NM_001281469, intron 2 of 2)	MER58D|DNA|hAT-Charlie	2952	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
196772	chr6	45494621	45495150	+	0	NA	intron (NM_001278478, intron 4 of 5)	intron (NM_001278478, intron 4 of 5)	72610	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
94882	chr17	31531621	31532080	+	0	NA	3' UTR (NM_001346747, exon 12 of 12)	3' UTR (NM_001346747, exon 12 of 12)	-3033	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
13528	chr1	114854921	114855430	+	0	NA	intron (NM_003176, intron 1 of 31)	CpG	312	NM_003176	6847		NM_003176	ENSG00000198765	SYCP1	CT8|HOM-TES-14|SCP-1|SCP1	synaptonemal complex protein 1	protein-coding
88205	chr16	81810921	81811680	+	0	NA	intron (NM_002661, intron 2 of 32)	MIRb|SINE|MIR	32009	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
49432	chr12	24729471	24729830	+	0	NA	Intergenic	Intergenic	-145482	NR_029451	144360		NM_144667	ENSG00000197503	LINC00477	C12orf67|FAM191B	long intergenic non-protein coding RNA 477	ncRNA
144341	chr20	34994151	34994780	+	0	NA	intron (NM_020884, intron 27 of 44)	intron (NM_020884, intron 27 of 44)	-3993	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
227	chr1	857921	859230	+	0	NA	non-coding (NR_047525, exon 5 of 5)	non-coding (NR_047525, exon 5 of 5)	18227	NR_027055	284593		NR_027055	ENSG00000230368	FAM41C	-	family with sequence similarity 41 member C	ncRNA
110426	chr19	1969001	1969400	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	-14651	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
152520	chr22	20963451	20963750	+	0	NA	intron (NR_110537, intron 1 of 1)	intron (NR_110537, intron 1 of 1)	-1572	NM_001018060	150209		NM_144704	ENSG00000183773	AIFM3	AIFL	apoptosis inducing factor mitochondria associated 3	protein-coding
170167	chr3	183608021	183608280	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-27473	NM_001349420	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
222765	chr8	141540651	141541050	+	0	NA	Intergenic	Intergenic	-33620	NR_102363	389690		NM_207414	ENSG00000226807	MROH5	-	maestro heat like repeat family member 5 (gene/pseudogene)	protein-coding
198034	chr6	90167951	90168250	+	0	NA	intron (NM_021813, intron 4 of 8)	AluJb|SINE|Alu	128743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
173939	chr4	25830671	25830830	+	0	NA	intron (NM_001297592, intron 5 of 23)	intron (NM_001297592, intron 5 of 23)	32238	NM_015187	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
92592	chr17	9464501	9464750	+	0	NA	intron (NM_004853, intron 6 of 7)	intron (NM_004853, intron 6 of 7)	111195	NM_004853	9482		NM_004853	ENSG00000170310	STX8	CARB	syntaxin 8	protein-coding
142521	chr20	4949771	4950330	+	0	NA	intron (NM_203327, intron 2 of 16)	intron (NM_203327, intron 2 of 16)	51460	NM_005116	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
154875	chr22	37138871	37139300	+	0	NA	intron (NM_000878, intron 5 of 9)	intron (NM_000878, intron 5 of 9)	10831	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
91196	chr17	3895151	3895730	+	0	NA	Intergenic	Intergenic	-2387	NM_032294	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
154340	chr22	32266121	32266450	+	0	NA	intron (NR_149072, intron 2 of 3)	intron (NR_149072, intron 2 of 3)	-10938	NM_014227	6527		NM_014227	ENSG00000100191	SLC5A4	DJ90G24.4|SAAT1|SGLT3	solute carrier family 5 member 4	protein-coding
84835	chr16	31115351	31116030	+	0	NA	Intergenic	AluJr|SINE|Alu	-1974	NM_182958	84148		NM_032188	ENSG00000103510	KAT8	LIGOWS|MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
220835	chr8	102861651	102862100	+	0	NA	intron (NM_148174, intron 1 of 11)	AluSx1|SINE|Alu	2288	NM_001301668	51582		NM_015878	ENSG00000155096	AZIN1	AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
115546	chr19	15479601	15480000	+	0	NA	promoter-TSS (NM_052890)	promoter-TSS (NM_052890)	-299	NM_001363546	114770		NM_052890	ENSG00000161031	PGLYRP2	HMFT0141|PGLYRPL|PGRP-L|PGRPL|TAGL-like|tagL|tagL-alpha|tagl-beta	peptidoglycan recognition protein 2	protein-coding
75291	chr15	65170521	65170900	+	0	NA	intron (NM_006660, intron 3 of 13)	AluSx1|SINE|Alu	14632	NR_133680	10845		NM_006660	ENSG00000166855	CLPX	EPP2	caseinolytic mitochondrial matrix peptidase chaperone subunit X	protein-coding
71299	chr14	105303221	105303480	+	0	NA	intron (NM_001243127, intron 1 of 23)	AluY|SINE|Alu	-2349	NM_001519	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
212853	chr7	130844771	130845530	+	0	NA	Intergenic	AluJr|SINE|Alu	31660	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
56345	chr12	112988201	112988700	+	0	NA	3' UTR (NM_001032731, exon 2 of 2)	3' UTR (NM_001032731, exon 2 of 2)	9931	NM_002535	4939		NM_002535	ENSG00000111335	OAS2	-	2'-5'-oligoadenylate synthetase 2	protein-coding
63010	chr13	112640651	112641060	+	0	NA	Intergenic	Intergenic	-6189	NR_164109	400165		NM_207440	ENSG00000197595	ATP11AUN	C13orf35|SMABLO1	ATP11A upstream neighbor lncRNA	ncRNA
131802	chr2	98556651	98556950	+	0	NA	intron (NM_001134224, intron 17 of 25)	intron (NM_001134224, intron 17 of 25)	51712	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
187871	chr5	148386071	148386230	+	0	NA	intron (NM_205836, intron 1 of 21)	intron (NM_205836, intron 1 of 21)	2192	NM_030793	81545		NM_030793	ENSG00000145868	FBXO38	Fbx38|HMN2D|HMND6|MOKA|SP329	F-box protein 38	protein-coding
49254	chr12	19452951	19453090	+	0	NA	intron (NM_001267043, intron 1 of 8)	AluY|SINE|Alu	12421	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
198301	chr6	100460771	100460930	+	0	NA	intron (NM_005068, intron 2 of 11)	intron (NM_005068, intron 2 of 11)	3606	NM_001374769	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
24886	chr10	990551	991180	+	0	NA	intron (NM_012341, intron 1 of 16)	L2c|LINE|L2	2431	NM_012341	23560		NM_012341	ENSG00000107937	GTPBP4	CRFG|NGB|NOG1	GTP binding protein 4	protein-coding
89551	chr16	89224451	89224950	+	0	NA	intron (NM_182531, intron 4 of 5)	intron (NM_182531, intron 4 of 5)	6997	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
93577	chr17	19108171	19108400	+	0	NA	Intergenic	Intergenic	4351	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
228130	chr9	96666571	96667330	+	0	NA	Intergenic	Intergenic	-11633	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
157173	chr22	43001221	43001930	+	0	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	13574	NM_001184970	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
128636	chr2	61400201	61400400	+	0	NA	intron (NM_014709, intron 3 of 79)	AluY|SINE|Alu	17077	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
103066	chr17	77277271	77278000	+	0	NA	intron (NR_136503, intron 1 of 2).2	AluY|SINE|Alu	-3864	NM_001293695	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
166485	chr3	114296551	114297430	+	0	NA	intron (NM_173799, intron 2 of 3)	AluSp|SINE|Alu	2962	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
74624	chr15	60695571	60696330	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	14381	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
80212	chr16	2161801	2162550	+	0	NA	intron (NM_032271, intron 1 of 20)	intron (NM_032271, intron 1 of 20)	6393	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
205225	chr7	7975421	7975700	+	0	NA	intron (NM_138426, intron 1 of 7)	intron (NM_138426, intron 1 of 7)	6764	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
166618	chr3	119458371	119458730	+	0	NA	intron (NR_073506, intron 2 of 9)	L2|LINE|L2	5065	NR_073506	55254		NM_018266	ENSG00000176142	TMEM39A	SUSR2	transmembrane protein 39A	protein-coding
75562	chr15	67035321	67035930	+	0	NA	intron (NR_135686, intron 2 of 5)	intron (NR_135686, intron 2 of 5)	28557	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
21192	chr1	203822571	203822730	+	0	NA	intron (NM_001376350, intron 4 of 17)	intron (NM_001376350, intron 4 of 17)	25127	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
211828	chr7	108455901	108457630	+	0	NA	promoter-TSS (NM_005010)	promoter-TSS (NM_005010)	-45	NM_001371122	4897		NM_005010	ENSG00000091129	NRCAM	NEDNMS	neuronal cell adhesion molecule	protein-coding
22596	chr1	223189371	223190600	+	0	NA	Intergenic	Intergenic	-46737	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
186250	chr5	134467721	134468180	+	0	NA	Intergenic	Intergenic	-32903	NR_105044	102546229		NR_105044		LINC02999	-	long intergenic non-protein coding RNA 2999	ncRNA
33698	chr10	120850971	120852250	+	0	NA	promoter-TSS (NR_033850)	promoter-TSS (NR_033850)	248	NM_018117	55717		NM_018117	ENSG00000120008	WDR11	BRWD2|DR11|HH14|SRI1|WDR15	WD repeat domain 11	protein-coding
225868	chr9	38432901	38433250	+	0	NA	Intergenic	Intergenic	-8621	NM_001007563	347252		NM_001007563	ENSG00000137142	IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin like growth factor binding protein like 1	protein-coding
193682	chr6	31086601	31086950	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	25800	NM_014070	29113		NM_014070	ENSG00000204542	C6orf15	STG	chromosome 6 open reading frame 15	protein-coding
92261	chr17	8013451	8013750	+	0	NA	intron (NM_000180, intron 11 of 19)	intron (NM_000180, intron 11 of 19)	10985	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
77354	chr15	82663151	82663530	+	0	NA	promoter-TSS (NM_001348441)	promoter-TSS (NM_001348441)	-665	NM_001348441	8120		NM_004644	ENSG00000103723	AP3B2	DEE48|EIEE48|NAPTB	adaptor related protein complex 3 subunit beta 2	protein-coding
42737	chr11	72699121	72699580	+	0	NA	intron (NR_161388, intron 14 of 29)	MIR1_Amn|SINE|MIR	-1124	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
32362	chr10	102390971	102391550	+	0	NA	Intergenic	Intergenic	-2850	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
174231	chr4	37826101	37827480	+	0	NA	exon (NM_018290, exon 1 of 14)	exon (NM_018290, exon 1 of 14)	104	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
159253	chr3	12931371	12932280	+	0	NA	intron (NM_014869, intron 3 of 13)	intron (NM_014869, intron 3 of 13)	35905	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
140376	chr2	233055051	233055150	+	0	NA	Intergenic	Intergenic	-5242	NM_005541	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
113864	chr19	10656951	10657150	+	0	NA	intron (NM_153464, intron 1 of 17)	AluSp|SINE|Alu	2704	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
136990	chr2	190532201	190532830	+	0	NA	intron (NR_136298, intron 1 of 8)	intron (NR_136298, intron 1 of 8)	2207	NM_001142645	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
103098	chr17	77340721	77341300	+	0	NA	intron (NM_006640, intron 1 of 10)	Tigger1|DNA|TcMar-Tigger	21495	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
74977	chr15	63859951	63860830	+	0	NA	Intergenic	Intergenic	10629	NR_029944	494334		NR_029944	ENSG00000199156	MIR422A	MIRN422A	microRNA 422a	ncRNA
61123	chr13	48503901	48504300	+	0	NA	intron (NM_001286832, intron 5 of 9)	L2|LINE|L2	28980	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
52668	chr12	56338351	56340450	+	0	NA	intron (NM_016584, intron 1 of 3)	intron (NM_016584, intron 1 of 3)	516	NM_016584	51561		NM_016584	ENSG00000110944	IL23A	IL-23|IL-23A|IL23P19|P19|SGRF	interleukin 23 subunit alpha	protein-coding
162261	chr3	47291921	47292380	+	0	NA	intron (NM_025010, intron 1 of 9)	intron (NM_025010, intron 1 of 9)	9206	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
177065	chr4	108038621	108038880	+	0	NA	Intergenic	MIRb|SINE|MIR	34086	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
135045	chr2	156335401	156336080	+	0	NA	TTS (NR_147695)	TTS (NR_147695)	-3019	NM_173173	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
23531	chr1	229148171	229148480	+	0	NA	Intergenic	Intergenic	26476	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
134443	chr2	143152101	143153000	+	0	NA	intron (NM_018460, intron 1 of 13)	L2a|LINE|L2	23131	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
128114	chr2	48228021	48228480	+	0	NA	Intergenic	MIRb|SINE|MIR	-86049	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
53392	chr12	64694471	64694630	+	0	NA	intron (NR_040718, intron 3 of 3)	L2c|LINE|L2	64856	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
47965	chr12	6871911	6872800	+	0	NA	exon (NM_001319670, exon 1 of 2)	exon (NM_001319670, exon 1 of 2)	948	NM_001146316	84727		NM_032641	ENSG00000111671	SPSB2	GRCC9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding
168330	chr3	141762521	141762780	+	0	NA	promoter-TSS (NM_139209)	promoter-TSS (NM_139209)	-758	NM_139209	131890		NM_139209	ENSG00000114124	GRK7	GPRK7	G protein-coupled receptor kinase 7	protein-coding
20660	chr1	200154171	200154680	+	0	NA	intron (NM_205860, intron 7 of 7)	intron (NM_205860, intron 7 of 7)	111600	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
173751	chr4	16224321	16225430	+	0	NA	intron (NM_153365, intron 1 of 13)	intron (NM_153365, intron 1 of 13)	1596	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
8159	chr1	39489021	39490080	+	0	NA	Intergenic	Intergenic	-2086	NM_181809	353500		NM_181809	ENSG00000183682	BMP8A	OP-2|Op2	bone morphogenetic protein 8a	protein-coding
64986	chr14	38065061	38066100	+	0	NA	Intergenic	MER66D|LTR|ERV1	-142324	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
225896	chr9	39793901	39794100	+	0	NA	Intergenic	L2|LINE|L2	16159	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
185332	chr5	126808421	126809180	+	0	NA	intron (NR_134488, intron 3 of 11)	intron (NR_134488, intron 3 of 11)	31664	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
104556	chr17	81330751	81331050	+	0	NA	promoter-TSS (NR_165247)	promoter-TSS (NR_165247)	-226	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
216412	chr8	18755701	18755930	+	0	NA	intron (NM_015310, intron 9 of 15)	intron (NM_015310, intron 9 of 15)	53052	NM_206909	23362		NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
121184	chr19	46493151	46494730	+	0	NA	exon (NM_020709, exon 1 of 1)	exon (NM_020709, exon 1 of 1)	1927	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
47990	chr12	6911301	6911530	+	0	NA	intron (NM_006992, intron 6 of 6)	intron (NM_006992, intron 6 of 6)	-3165	NM_001975	2026		NM_001975	ENSG00000111674	ENO2	HEL-S-279|NSE	enolase 2	protein-coding
206858	chr7	37442021	37442350	+	0	NA	intron (NM_001206480, intron 1 of 21)	MER20|DNA|hAT-Charlie	6767	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
99943	chr17	57281921	57282580	+	0	NA	intron (NM_170721, intron 4 of 9)	intron (NM_170721, intron 4 of 9)	25231	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
20695	chr1	200620321	200621400	+	0	NA	promoter-TSS (NM_014875)	promoter-TSS (NM_014875)	-109	NM_014875	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
109376	chr19	648101	648680	+	0	NA	exon (NM_001366018, exon 8 of 9)	exon (NM_001366018, exon 8 of 9)	8495	NM_001300812	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
77633	chr15	85453601	85454400	+	0	NA	intron (NM_007200, intron 1 of 36)	L1PA14|LINE|L1	73397	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
9687	chr1	52927001	52928300	+	0	NA	intron (NM_001193617, intron 1 of 14)	CpG	374	NM_001193617	6342		NM_002979	ENSG00000116171	SCP2	NLTP|NSL-TP|SCOX|SCP-2|SCP-CHI|SCP-X|SCPX	sterol carrier protein 2	protein-coding
12905	chr1	110460051	110460630	+	0	NA	Intergenic	Intergenic	9191	NM_032414	84432		NM_032414	ENSG00000143125	PROK1	EGVEGF|PK1|PRK1	prokineticin 1	protein-coding
60273	chr13	40614671	40615030	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	51791	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
70077	chr14	100156101	100156500	+	0	NA	intron (NM_206918, intron 1 of 2)	MIR3|SINE|MIR	3345	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
171630	chr3	197519801	197520280	+	0	NA	intron (NM_203315, intron 5 of 6)	intron (NM_203315, intron 5 of 6)	-10379	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
123905	chr19	55344001	55344950	+	0	NA	intron (NM_032701, intron 6 of 8)	intron (NM_032701, intron 6 of 8)	4599	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
194106	chr6	31948371	31948730	+	0	NA	intron (NM_001710, intron 7 of 17).3	intron (NM_001710, intron 7 of 17).3	2455	NM_001710	629		NM_001710	ENSG00000243649	CFB	AHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2	complement factor B	protein-coding
225437	chr9	35084821	35085350	+	0	NA	Intergenic	AluJo|SINE|Alu	-5143	NM_004629	2189		NM_004629	ENSG00000221829	FANCG	FAG|XRCC9	FA complementation group G	protein-coding
220769	chr8	102409101	102409750	+	0	NA	intron (NM_001282873, intron 1 of 58)	intron (NM_001282873, intron 1 of 58)	-2914	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
11933	chr1	93715701	93716100	+	0	NA	intron (NM_001261408, intron 2 of 13)	intron (NM_001261408, intron 2 of 13)	-34063	NM_003567	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
10779	chr1	77413321	77413980	+	0	NA	intron (NM_174858, intron 7 of 13)	MIR|SINE|MIR	130563	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
199242	chr6	111830051	111830350	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	42871	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
168284	chr3	141494801	141495000	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	7873	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
152377	chr22	20514751	20515250	+	0	NA	intron (NM_001293237, intron 1 of 16)	L2b|LINE|L2	6953	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
80724	chr16	3101201	3102300	+	0	NA	Intergenic	AluSp|SINE|Alu	-2456	NM_001365273	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
237750	chrX	129642051	129642150	+	0	NA	Intergenic	MIRb|SINE|MIR	12856	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
61788	chr13	75320901	75321380	+	0	NA	intron (NM_014832, intron 11 of 20)	intron (NM_014832, intron 11 of 20)	80552	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
101162	chr17	65102821	65103080	+	0	NA	intron (NR_110801, intron 2 of 2)	AluJb|SINE|Alu	2138	NR_110801	100507002		NR_110801		LOC100507002	-	uncharacterized LOC100507002	ncRNA
60086	chr13	35476201	35476730	+	0	NA	promoter-TSS (NM_001204197)	promoter-TSS (NM_001204197)	224	NM_005584	4081		NM_005584	ENSG00000180660	MAB21L1	CAGR1|COFG|Nbla00126	mab-21 like 1	protein-coding
19887	chr1	183638751	183639050	+	0	NA	intron (NM_015149, intron 1 of 18)	intron (NM_015149, intron 1 of 18)	2791	NM_001297670	23179		NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
87297	chr16	70111721	70111980	+	0	NA	Intergenic	AluJb|SINE|Alu	-1776	NM_001322117	55066		NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
161214	chr3	39175921	39176430	+	0	NA	Intergenic	L2a|LINE|L2	16420	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
123655	chr19	54803371	54803780	+	0	NA	promoter-TSS (NM_001080772).25	promoter-TSS (NM_001080772).25	-35	NM_002255	3805		NM_002255	ENSG00000189013	KIR2DL4	CD158D|G9P|KIR-103AS|KIR-2DL4|KIR103|KIR103AS	killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 4	protein-coding
236140	chrX	63350701	63351590	+	0	NA	5' UTR (NM_001012968, exon 1 of 1)	5' UTR (NM_001012968, exon 1 of 1)	187	NM_001012968	139886		NM_001012968	ENSG00000186767	SPIN4	LJBS|TDRD28	spindlin family member 4	protein-coding
191337	chr6	7112521	7113180	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	4889	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
182720	chr5	68253671	68254030	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-34669	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
198978	chr6	110896401	110896700	+	0	NA	TTS (NM_001287214)	TTS (NM_001287214)	21766	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
222839	chr8	142610521	142610980	+	0	NA	TTS (NM_015193)	TTS (NM_015193)	3729	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
18730	chr1	167468271	167468850	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	49969	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
148146	chr20	63497321	63497580	+	0	NA	intron (NM_001958, intron 2 of 7)	intron (NM_001958, intron 2 of 7)	1633	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
91358	chr17	4532651	4533100	+	0	NA	intron (NM_001124758, intron 6 of 12)	intron (NM_001124758, intron 6 of 12)	22509	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
136646	chr2	179985371	179985730	+	0	NA	intron (NM_001376029, intron 4 of 19)	intron (NM_001376029, intron 4 of 19)	14356	NM_001376030	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
52377	chr12	55712871	55713200	+	0	NA	promoter-TSS (NM_001144997)	promoter-TSS (NM_001144997)	-627	NM_001367993	3679		NM_002206	ENSG00000135424	ITGA7	-	integrin subunit alpha 7	protein-coding
100446	chr17	61393751	61394280	+	0	NA	intron (NR_125751, intron 1 of 1)	intron (NR_125751, intron 1 of 1)	5591	NR_125749	103689912		NR_125749	ENSG00000267280	TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
99813	chr17	51764451	51764730	+	0	NA	intron (NM_020178, intron 3 of 8)	intron (NM_020178, intron 3 of 8)	329163	NR_146897	105371828		NR_146897	ENSG00000267452	LINC02073	-	long intergenic non-protein coding RNA 2073	ncRNA
44396	chr11	103090871	103092600	+	0	NA	5' UTR (NM_001318739, exon 1 of 8)	5' UTR (NM_001318739, exon 1 of 8)	425	NM_032299	84259		NM_032299	ENSG00000137692	DCUN1D5	DCNL5|SCCRO5	defective in cullin neddylation 1 domain containing 5	protein-coding
97750	chr17	44400271	44400600	+	0	NA	exon (NM_001002909, exon 8 of 8)	exon (NM_001002909, exon 8 of 8)	-10786	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
62376	chr13	99240521	99241250	+	0	NA	intron (NM_177967, intron 2 of 6)	MamRTE1|LINE|RTE-BovB	17543	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
10119	chr1	59150971	59151650	+	0	NA	Intergenic	Intergenic	-4503	NR_027120	729467		NR_027120	ENSG00000224609	HSD52	-	uncharacterized LOC729467	ncRNA
125393	chr2	11467351	11467450	+	0	NA	Intergenic	L2b|LINE|L2	-1223	NM_001278278	1876		NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
95642	chr17	37833321	37833600	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	51283	NR_024178	284100		NM_001129906	ENSG00000290810	YWHAEP7	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7	pseudo
73702	chr15	45115601	45116180	+	0	NA	intron (NM_207581, intron 2 of 5)	intron (NM_207581, intron 2 of 5)	1564	NM_207581	405753		NM_207581	ENSG00000140274	DUOXA2	SIMNIPHOM|TDH5	dual oxidase maturation factor 2	protein-coding
17022	chr1	156056451	156057150	+	0	NA	intron (NM_001145264, intron 2 of 2)	intron (NM_001145264, intron 2 of 2)	2018	NM_001145264	28956		NM_014017	ENSG00000116586	LAMTOR2	ENDAP|HSPC003|MAPBPIP|MAPKSP1AP|ROBLD3|Ragulator2|p14	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding
3696	chr1	16539121	16539380	+	0	NA	Intergenic	Intergenic	-3598	NR_135764	100132147		NR_135764	ENSG00000233421	LINC01783	-	long intergenic non-protein coding RNA 1783	ncRNA
14760	chr1	146020371	146020530	+	0	NA	intron (NM_001379352, intron 1 of 3)	intron (NM_001379352, intron 1 of 3)	1285	NM_213652	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
50087	chr12	44837021	44838080	+	0	NA	intron (NM_001145108, intron 2 of 19)	MIRb|SINE|MIR	38111	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
67380	chr14	69772221	69773200	+	0	NA	TTS (NM_006925)	TTS (NM_006925)	-4997	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
131906	chr2	98773271	98773430	+	0	NA	Intergenic	Intergenic	-1452	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
160181	chr3	23709951	23710250	+	0	NA	Intergenic	L2a|LINE|L2	-95855	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
129414	chr2	69304421	69304680	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	82677	NM_002056	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
130553	chr2	85699651	85699750	+	0	NA	TTS (NM_012483)	TTS (NM_012483)	5342	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
105526	chr17	83117951	83118450	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	37054	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
86958	chr16	68126471	68126630	+	0	NA	exon (NM_004555, exon 3 of 11)	exon (NM_004555, exon 3 of 11)	41180	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
72387	chr15	31376251	31376350	+	0	NA	3' UTR (NM_015995, exon 2 of 2)	3' UTR (NM_015995, exon 2 of 2)	49465	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
89976	chr16	89829701	89830250	+	0	NA	intron (NM_032451, intron 1 of 14)	intron (NM_032451, intron 1 of 14)	1500	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
45519	chr11	118706271	118706680	+	0	NA	Intergenic	Intergenic	-26825	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
107762	chr18	50559621	50560150	+	0	NA	promoter-TSS (NM_001292040)	promoter-TSS (NM_001292040)	-202	NM_002747	5596		NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding
41511	chr11	66259651	66259830	+	0	NA	intron (NM_001134774, intron 2 of 14)	L2c|LINE|L2	2037	NM_001134774	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
35587	chr11	1733501	1733700	+	0	NA	3' UTR (NM_001170820, exon 3 of 3)	3' UTR (NM_001170820, exon 3 of 3)	16995	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
110782	chr19	2431301	2431700	+	0	NA	intron (NM_032737, intron 11 of 11)	intron (NM_032737, intron 11 of 11)	3500	NR_106958	102466806		NR_106958	ENSG00000283728	MIR7108	hsa-mir-7108	microRNA 7108	ncRNA
237578	chrX	123728001	123728200	+	0	NA	intron (NM_001081550, intron 1 of 38)	intron (NM_001081550, intron 1 of 38)	4952	NM_001081550	57187		NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|XLID12|dJ506G2.1|hTREX120	THO complex subunit 2	protein-coding
231150	chr9	129871201	129871580	+	0	NA	intron (NM_001110303, intron 15 of 25)	L1MB3|LINE|L1	1785	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
203869	chr7	1470051	1470730	+	0	NA	3' UTR (NM_001080453, exon 48 of 48)	3' UTR (NM_001080453, exon 48 of 48)	-10920	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
192116	chr6	16735671	16735830	+	0	NA	non-coding (NR_152114, exon 4 of 4)	non-coding (NR_152114, exon 4 of 4)	24434	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
133867	chr2	128382001	128382600	+	0	NA	Intergenic	Intergenic	-63432	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
14795	chr1	146138251	146139130	+	0	NA	intron (NM_001302371, intron 5 of 89)	intron (NM_001302371, intron 5 of 89)	6114	NM_001302371	100132406		NM_001039703	ENSG00000271425	NBPF10	AB6|AG1|NBPF9	NBPF member 10	protein-coding
131656	chr2	97655351	97655830	+	0	NA	TTS (NM_005735)	TTS (NM_005735)	8454	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
147858	chr20	62812751	62813500	+	0	NA	exon (NM_007346, exon 7 of 7)	exon (NM_007346, exon 7 of 7)	-3925	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
127683	chr2	43198321	43198950	+	0	NA	Intergenic	MIR3|SINE|MIR	27971	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
168509	chr3	143832051	143832150	+	0	NA	exon (NM_173653, exon 2 of 16)	exon (NM_173653, exon 2 of 16)	16368	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
73348	chr15	42133901	42134150	+	0	NA	Intergenic	Intergenic	22611	NM_213600	255189		NM_213600	ENSG00000168907	PLA2G4F	PLA2G4FZ	phospholipase A2 group IVF	protein-coding
145632	chr20	44780201	44780450	+	0	NA	intron (NM_001205317, intron 1 of 5)	intron (NM_001205317, intron 1 of 5)	30221	NM_001205317	140730		NM_182970	ENSG00000101098	RIMS4	C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma	regulating synaptic membrane exocytosis 4	protein-coding
149446	chr21	31558411	31560250	+	0	NA	promoter-TSS (NM_001321023)	promoter-TSS (NM_001321023)	97	NM_001321023	150051		NM_001321023	ENSG00000237594	TIAM1-AS1	-	TIAM1 antisense RNA 1	ncRNA
81214	chr16	4509251	4510250	+	0	NA	TTS (NM_013399)	TTS (NM_013399)	13892	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
215245	chr7	156924201	156924500	+	0	NA	Intergenic	LTR59|LTR|ERV1	-25362	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
156278	chr22	40454221	40454480	+	0	NA	intron (NM_001282661, intron 4 of 13)	AluJo|SINE|Alu	9090	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
54987	chr12	96343251	96344150	+	0	NA	intron (NM_002595, intron 1 of 16)	L1MB4|LINE|L1	56739	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
25646	chr10	8245001	8246250	+	0	NA	Intergenic	Intergenic	22680	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
120211	chr19	42295751	42297480	+	0	NA	TTS (NM_001304815)	TTS (NM_001304815)	-5517	NM_199285	284338		NM_199285	ENSG00000188368	PRR19	-	proline rich 19	protein-coding
24679	chr1	247168721	247168980	+	0	NA	intron (NM_003431, intron 1 of 3)	L1PB2|LINE|L1	3167	NM_001297567	7678		NM_003431	ENSG00000196418	ZNF124	HZF-16|HZF16|ZK7	zinc finger protein 124	protein-coding
127784	chr2	44191501	44192350	+	0	NA	intron (NM_177969, intron 1 of 4)	intron (NM_177969, intron 1 of 4)	23050	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
189548	chr5	174118051	174118150	+	0	NA	Intergenic	(CCTT)n|Simple_repeat|Simple_repeat	72394	NM_015980	51617		NM_015980	ENSG00000170091	NSG2	CALY3|HMP19	neuronal vesicle trafficking associated 2	protein-coding
23040	chr1	226547571	226548050	+	0	NA	promoter-TSS (NM_001003665)	promoter-TSS (NM_001003665)	-954	NM_001003665	375057		NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
209873	chr7	90595801	90596630	+	0	NA	promoter-TSS (NM_001287135)	promoter-TSS (NM_001287135)	-106	NM_001287135	5218		NM_012395	ENSG00000058091	CDK14	PFTAIRE1|PFTK1	cyclin dependent kinase 14	protein-coding
180676	chr5	18764251	18764600	+	0	NA	Intergenic	Intergenic	957151	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
208756	chr7	73534401	73534800	+	0	NA	Intergenic	AluYc|SINE|Alu	-12307	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
181573	chr5	43191571	43192930	+	0	NA	promoter-TSS (NM_153361)	promoter-TSS (NM_153361)	25	NM_153361	167359		NM_153361	ENSG00000177453	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
9272	chr1	46337901	46338100	+	0	NA	Intergenic	AluSx|SINE|Alu	-2177	NR_045789	387338		NM_199044	ENSG00000117481	NSUN4	SHTAP	NOP2/Sun RNA methyltransferase 4	protein-coding
20194	chr1	193104601	193105680	+	0	NA	intron (NM_001243399, intron 1 of 3)	CpG	274	NM_197962	51022		NM_016066	ENSG00000023572	GLRX2	CGI-133|GRX2	glutaredoxin 2	protein-coding
194067	chr6	31867201	31867600	+	0	NA	intron (NM_001178045, intron 13 of 20).5	intron (NM_001178045, intron 13 of 20).5	-4579	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
201848	chr6	150204851	150205150	+	0	NA	intron (NM_030949, intron 1 of 3)	intron (NM_030949, intron 1 of 3)	61956	NM_030949	81706		NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1 regulatory inhibitor subunit 14C	protein-coding
193557	chr6	30620971	30621130	+	0	NA	intron (NM_014046, intron 4 of 6).5	intron (NM_014046, intron 4 of 6).5	3210	NM_014046	28973		NM_014046	ENSG00000204568	MRPS18B	C6orf14|HSPC183|HumanS18a|MRP-S18-2|MRPS18-2|PTD017|S18amt|mS40	mitochondrial ribosomal protein S18B	protein-coding
225992	chr9	41275451	41275550	+	0	NA	Intergenic	L1PBa|LINE|L1	-41665	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
133438	chr2	119365021	119365280	+	0	NA	intron (NM_001322329, intron 1 of 6)	intron (NM_001322329, intron 1 of 6)	1592	NM_001017927	130355		NM_001017927	ENSG00000186132	C2orf76	AIM29	chromosome 2 open reading frame 76	protein-coding
122036	chr19	48632671	48633430	+	0	NA	intron (NM_001352, intron 3 of 3)	AluJb|SINE|Alu	4329	NM_001352	1628		NM_001352	ENSG00000105516	DBP	DABP|taxREB302	D-box binding PAR bZIP transcription factor	protein-coding
33404	chr10	118349221	118349480	+	0	NA	Intergenic	AluJr|SINE|Alu	-7026	NM_022063	63877		NM_022063	ENSG00000165669	FAM204A	C10orf84|bA319I23.1	family with sequence similarity 204 member A	protein-coding
186964	chr5	139666721	139667280	+	0	NA	intron (NM_001317203, intron 2 of 3)	intron (NM_001317203, intron 2 of 3)	7445	NM_001317206	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
159748	chr3	16249321	16249580	+	0	NA	Intergenic	MIRb|SINE|MIR	15493	NM_001047434	285381		NM_206831	ENSG00000154813	DPH3	DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2	diphthamide biosynthesis 3	protein-coding
172287	chr4	1562771	1562930	+	0	NA	Intergenic	Intergenic	121141	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
104471	chr17	81118951	81120010	+	0	NA	exon (NM_004920, exon 12 of 13)	exon (NM_004920, exon 12 of 13)	5893	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
49535	chr12	26124451	26125180	+	0	NA	5' UTR (NM_030762, exon 1 of 5)	5' UTR (NM_030762, exon 1 of 5)	222	NM_030762	79365		NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|FNSS1|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding
92108	chr17	7581301	7581700	+	0	NA	TTS (NR_136402)	TTS (NR_136402)	1862	NM_001251	968		NM_001251	ENSG00000129226	CD68	GP110|LAMP4|SCARD1	CD68 molecule	protein-coding
74125	chr15	55218971	55219130	+	0	NA	intron (NM_183236, intron 6 of 6)	Charlie25|DNA|hAT-Charlie	-22109	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
1516	chr1	2894401	2895000	+	0	NA	Intergenic	Intergenic	-93832	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
92460	chr17	8485851	8486150	+	0	NA	intron (NM_005964, intron 34 of 40)	L1MB8|LINE|L1	50116	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
112356	chr19	5959651	5960400	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	18115	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
190863	chr6	2081501	2081850	+	0	NA	intron (NM_001253846, intron 4 of 10)	intron (NM_001253846, intron 4 of 10)	94316	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
151773	chr22	18024221	18024930	+	0	NA	promoter-TSS (NM_015241)	promoter-TSS (NM_015241)	-14	NM_015241	57553		NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
165943	chr3	107598801	107600030	+	0	NA	intron (NM_020235, intron 2 of 16)	intron (NM_020235, intron 2 of 16)	76453	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
96066	chr17	39595151	39596250	+	0	NA	Intergenic	Intergenic	12220	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
174583	chr4	40244571	40245100	+	0	NA	TTS (NM_001278369)	TTS (NM_001278369)	47804	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
4056	chr1	19057521	19057780	+	0	NA	Intergenic	Intergenic	-100974	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
181240	chr5	39197651	39198680	+	0	NA	intron (NM_199335, intron 2 of 17)	MIRb|SINE|MIR	21398	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
144274	chr20	34571021	34571350	+	0	NA	intron (NM_080476, intron 11 of 11)	intron (NM_080476, intron 11 of 11)	12467	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
192733	chr6	26371521	26371780	+	0	NA	intron (NM_001197249, intron 4 of 9)	L1ME4b|LINE|L1	3472	NM_001197246	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
170006	chr3	180679021	180680300	+	0	NA	promoter-TSS (NM_181426)	promoter-TSS (NM_181426)	-171	NM_181426	339829		NM_181426	ENSG00000284862	CCDC39	CFAP59|CILD14|FAP59	coiled-coil domain 39 molecular ruler complex subunit	protein-coding
92495	chr17	8879121	8879850	+	0	NA	3' UTR (NM_014308, exon 19 of 19)	3' UTR (NM_014308, exon 19 of 19)	-11808	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
92801	chr17	16004151	16004450	+	0	NA	intron (NM_017775, intron 6 of 9)	intron (NM_017775, intron 6 of 9)	4476	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
151674	chr22	17103601	17104150	+	0	NA	intron (NM_014339, intron 8 of 12)	intron (NM_014339, intron 8 of 12)	17485	NM_031890	27439		NM_031890	ENSG00000183307	TMEM121B	CECR6	transmembrane protein 121B	protein-coding
88865	chr16	87690821	87691080	+	0	NA	intron (NM_020655, intron 4 of 4)	G-rich|Low_complexity|Low_complexity	75036	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
39384	chr11	59857851	59858350	+	0	NA	intron (NM_001062, intron 5 of 8)	MER44B|DNA|TcMar-Tigger	8387	NM_001062	6947		NM_001062	ENSG00000134827	TCN1	HC|TC-1|TC1|TCI	transcobalamin 1	protein-coding
220381	chr8	100157721	100159080	+	0	NA	promoter-TSS (NM_003114)	promoter-TSS (NM_003114)	-187	NM_003114	6674		NM_003114	ENSG00000104450	SPAG1	CILD28|CT140|DNAAF13|HEL-S-268|HSD-3.8|SP75|TPIS	sperm associated antigen 1	protein-coding
81722	chr16	11265901	11266100	+	0	NA	Intergenic	AluY|SINE|Alu	3325	NM_005425	7142		NM_005425	ENSG00000178279	TNP2	TP2	transition protein 2	protein-coding
204255	chr7	2622751	2623250	+	0	NA	Intergenic	Intergenic	-8986	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
203735	chr7	1145951	1146400	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-7918	NM_001134395	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
125099	chr2	9735921	9736450	+	0	NA	Intergenic	LTR48|LTR|ERV1	-105188	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
44158	chr11	96204421	96205600	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-136428	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
21508	chr1	205751371	205751780	+	0	NA	Intergenic	Intergenic	-1393	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
75490	chr15	66353771	66354130	+	0	NA	intron (NM_001289986, intron 1 of 6)	AluSx3|SINE|Alu	2735	NM_017858	54962		NM_017858	ENSG00000075131	TIPIN	-	TIMELESS interacting protein	protein-coding
157645	chr22	46120571	46120930	+	0	NA	Intergenic	AluSx1|SINE|Alu	7064	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
88890	chr16	87738751	87739200	+	0	NA	intron (NM_001351937, intron 5 of 11)	intron (NM_001351937, intron 5 of 11)	27011	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
103107	chr17	77356021	77358150	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	-16252	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
233109	chr9	137127071	137127900	+	0	NA	Intergenic	Intergenic	-11669	NM_007327	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
26062	chr10	12710951	12711450	+	0	NA	intron (NM_153498, intron 3 of 10)	intron (NM_153498, intron 3 of 10)	14153	NR_031752	100313841		NR_031752	ENSG00000221331	MIR548Q	-	microRNA 548q	ncRNA
192634	chr6	26133851	26134150	+	0	NA	Intergenic	L2a|LINE|L2	9828	NM_003512	8334		NM_003512	ENSG00000180573	H2AC6	H2A/l|H2AFL|HIST1H2AC|dJ221C16.4	H2A clustered histone 6	protein-coding
189989	chr5	177458771	177459400	+	0	NA	intron (NM_004395, intron 11 of 13)	intron (NM_004395, intron 11 of 13)	3341	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
125142	chr2	9965171	9965530	+	0	NA	exon (NM_198182, exon 8 of 16)	exon (NM_198182, exon 8 of 16)	13657	NM_198182	29841		NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
229430	chr9	121361001	121361950	+	0	NA	intron (NM_001270526, intron 1 of 6)	AluY|SINE|Alu	8775	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
1442	chr1	2639921	2640550	+	0	NA	Intergenic	Intergenic	-7219	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
44851	chr11	114147801	114148580	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	84979	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
75465	chr15	65872671	65872830	+	0	NA	intron (NM_004663, intron 1 of 4)	intron (NM_004663, intron 1 of 4)	3259	NM_001206836	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
184641	chr5	107464451	107464950	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	206237	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
55617	chr12	106984321	106984980	+	0	NA	intron (NM_025198, intron 2 of 2)	THE1B|LTR|ERVL-MaLR	2496	NM_001033050	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
147677	chr20	62306651	62306950	+	0	NA	intron (NM_175573, intron 5 of 9)	intron (NM_175573, intron 5 of 9)	3803	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
219344	chr8	70238051	70238350	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	165190	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
170494	chr3	186113521	186113880	+	0	NA	Intergenic	Intergenic	-4611	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
40926	chr11	65225271	65226050	+	0	NA	intron (NR_033396, intron 6 of 9)	intron (NR_033396, intron 6 of 9)	11820	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
64961	chr14	36272301	36272980	+	0	NA	Intergenic	Intergenic	47997	NM_001308110	51562		NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
180649	chr5	17520751	17521580	+	0	NA	Intergenic	Intergenic	-29089	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
123911	chr19	55349221	55349680	+	0	NA	TTS (NM_001369799)	TTS (NM_001369799)	5269	NM_144613	125965		NM_144613	ENSG00000160471	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit 6B2	protein-coding
151120	chr21	44886701	44886900	+	0	NA	exon (NM_001303238, exon 15 of 16)	exon (NM_001303238, exon 15 of 16)	-12897	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
220887	chr8	104548871	104549230	+	0	NA	intron (NM_013437, intron 1 of 6)	intron (NM_013437, intron 1 of 6)	39974	NM_001135703	29967		NM_013437	ENSG00000147650	LRP12	ALS28|MIG13A|ST7	LDL receptor related protein 12	protein-coding
43608	chr11	83175221	83175980	+	0	NA	intron (NM_015885, intron 9 of 15)	AluYj4|SINE|Alu	11884	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
166896	chr3	124651801	124652200	+	0	NA	intron (NM_001322999, intron 4 of 14)	intron (NM_001322999, intron 4 of 14)	67341	NM_001322997	8997		NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|KALNC2|TRAD	kalirin RhoGEF kinase	protein-coding
34552	chr10	133111751	133111850	+	0	NA	intron (NM_001291085, intron 2 of 3)	intron (NM_001291085, intron 2 of 3)	9554	NM_001291085	84435		NM_032422	ENSG00000197177	ADGRA1	GPR123	adhesion G protein-coupled receptor A1	protein-coding
211939	chr7	112470421	112470680	+	0	NA	intron (NR_120333, intron 8 of 11)	intron (NR_120333, intron 8 of 11)	-10303	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
38967	chr11	47547921	47548180	+	0	NA	intron (NM_001376458, intron 1 of 13)	AluSg4|SINE|Alu	5082	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
69904	chr14	99491601	99492000	+	0	NA	intron (NM_001099402, intron 1 of 10)	intron (NM_001099402, intron 1 of 10)	10391	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
82304	chr16	15642421	15644280	+	0	NA	promoter-TSS (NM_014647)	promoter-TSS (NM_014647)	-32	NM_001143979	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
141121	chr2	238944051	238944150	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-17831	NR_034162	401039		NM_001001698	ENSG00000227744	LINC01940	-	long intergenic non-protein coding RNA 1940	ncRNA
110850	chr19	2588851	2588950	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-41815	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
224389	chr9	10836471	10836630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	223344	NR_110696	101929428		NR_110696	ENSG00000226717	PTPRD-DT	PTPRD-AS2	PTPRD divergent transcript	ncRNA
11439	chr1	89819271	89819630	+	0	NA	Intergenic	AluSg|SINE|Alu	-1582	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
15431	chr1	150282001	150282930	+	0	NA	promoter-TSS (NM_144697)	promoter-TSS (NM_144697)	-89	NM_001300840	148523		NM_144697	ENSG00000159208	CIART	C1orf51|CHRONO|GM129	circadian associated repressor of transcription	protein-coding
34044	chr10	124735821	124736080	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	8428	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
49114	chr12	14773401	14774900	+	0	NA	promoter-TSS (NR_027716)	promoter-TSS (NR_027716)	-186	NR_027716	55766		NM_018267	ENSG00000246705	H2AJ	H2AFJ	H2A.J histone	protein-coding
113614	chr19	10305501	10305700	+	0	NA	intron (NM_001103167, intron 2 of 3)	intron (NM_001103167, intron 2 of 3)	3957	NM_001103167	100125288		NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	zinc finger GATA like protein 1	protein-coding
153694	chr22	29264771	29264930	+	0	NA	intron (NM_012265, intron 3 of 6)	AluY|SINE|Alu	3131	NR_138044	25807		NM_012265	ENSG00000100263	RHBDD3	C22orf3|HS984G1A|PTAG	rhomboid domain containing 3	protein-coding
149479	chr21	31933701	31933900	+	0	NA	intron (NM_014586, intron 2 of 10)	AluSx|SINE|Alu	60780	NM_014586	30811		NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
111032	chr19	3075701	3076680	+	0	NA	Intergenic	Intergenic	-11476	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
99449	chr17	50137101	50137300	+	0	NA	intron (NM_032595, intron 7 of 9)	L2b|LINE|L2	-7040	NM_174920	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
44026	chr11	95070651	95070750	+	0	NA	non-coding (NR_103726, exon 2 of 2)	non-coding (NR_103726, exon 2 of 2)	3823	NR_103726	10929		NM_032102	ENSG00000263465	SRSF8	DSM-1|SFRS2B|SRP46	serine and arginine rich splicing factor 8	protein-coding
7774	chr1	36187271	36187430	+	0	NA	Intergenic	AluJb|SINE|Alu	31190	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
83565	chr16	28110201	28110650	+	0	NA	intron (NM_001270940, intron 18 of 24)	MLT1I|LTR|ERVL-MaLR	-46711	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
66363	chr14	61468001	61468200	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	102094	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
60061	chr13	33285501	33285900	+	0	NA	promoter-TSS (NM_178006)	promoter-TSS (NM_178006)	55	NM_178006	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
121352	chr19	46824321	46824580	+	0	NA	Intergenic	Intergenic	6254	NR_024258	100170220		NR_024258		SNAR-E	-	small NF90 (ILF3) associated RNA E	snRNA
17392	chr1	156618371	156618730	+	0	NA	promoter-TSS (NM_021817)	promoter-TSS (NM_021817)	-865	NM_021817	60484		NM_021817	ENSG00000132702	HAPLN2	BRAL1	hyaluronan and proteoglycan link protein 2	protein-coding
80152	chr16	2093701	2093900	+	0	NA	intron (NM_001009944, intron 36 of 45)	intron (NM_001009944, intron 36 of 45)	2364	NR_135175	105371049		NR_135175	ENSG00000259933	PKD1-AS1	-	PKD1 antisense RNA 1	ncRNA
173828	chr4	18593521	18593930	+	0	NA	Intergenic	Intergenic	-571850	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
118155	chr19	35017171	35017730	+	0	NA	intron (NM_001320034, intron 11 of 18)	intron (NM_001320034, intron 11 of 18)	-13020	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
65536	chr14	51920071	51920230	+	0	NA	intron (NM_053064, intron 2 of 3)	MER8|DNA|TcMar-Tigger	-1579	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
175188	chr4	56465821	56466760	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1327	NM_001267722	6731		NM_006947	ENSG00000174780	SRP72	BMFF|BMFS1|HEL103	signal recognition particle 72	protein-coding
139071	chr2	218860851	218861480	+	0	NA	intron (NM_006522, intron 1 of 3)	intron (NM_006522, intron 1 of 3)	1360	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
153793	chr22	29602751	29604150	+	0	NA	promoter-TSS (NM_000268)	promoter-TSS (NM_000268)	-106	NM_016418	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
166437	chr3	113840721	113840980	+	0	NA	intron (NM_017577, intron 1 of 17)	LTR53-int|LTR|ERVL	2062	NM_017577	54762		NM_017577	ENSG00000178075	GRAMD1C	-	GRAM domain containing 1C	protein-coding
113713	chr19	10450851	10451200	+	0	NA	intron (NM_001111307, intron 6 of 14)	intron (NM_001111307, intron 6 of 14)	-1907	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
83590	chr16	28166851	28167650	+	0	NA	intron (NM_001270940, intron 6 of 24)	intron (NM_001270940, intron 6 of 24)	44715	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
197533	chr6	77650171	77650530	+	0	NA	promoter-TSS (NM_001282136)	promoter-TSS (NM_001282136)	76	NM_001282136	101928601		NM_001282136	ENSG00000269964	MEI4	-	meiotic double-stranded break formation protein 4	protein-coding
143463	chr20	30846051	30846150	+	0	NA	Intergenic	L1MC4|LINE|L1	-411564	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
178103	chr4	140609921	140610240	+	0	NA	Intergenic	Intergenic	33000	NR_077215	644962		NR_077215		TNRC18P1	-	trinucleotide repeat containing 18 pseudogene 1	pseudo
127298	chr2	38752851	38752950	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1406	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
55952	chr12	110005321	110006080	+	0	NA	intron (NM_033121, intron 1 of 14)	L1MB7|LINE|L1	6270	NM_033121	88455		NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
30944	chr10	87533671	87533980	+	0	NA	intron (NM_004897, intron 4 of 4)	intron (NM_004897, intron 4 of 4)	25992	NM_001178118	9562		NM_004897	ENSG00000107789	MINPP1	HIPER1|MINPP2|MIPP|PCH16	multiple inositol-polyphosphate phosphatase 1	protein-coding
179291	chr4	177315071	177315230	+	0	NA	intron (NM_018248, intron 1 of 9)	intron (NM_018248, intron 1 of 9)	5276	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
100479	chr17	61458521	61458780	+	0	NA	intron (NM_001321120, intron 3 of 8)	MIR|SINE|MIR	2162	NM_018488	9496		NM_018488	ENSG00000121075	TBX4	ICPPS|PAPPAS|SPS	T-box transcription factor 4	protein-coding
206721	chr7	36537471	36537830	+	0	NA	intron (NM_001177506, intron 16 of 21)	AluSq2|SINE|Alu	62470	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
230477	chr9	128219971	128220130	+	0	NA	exon (NM_001005336, exon 5 of 23)	exon (NM_001005336, exon 5 of 23)	-15828	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
119023	chr19	38913821	38914280	+	0	NA	Intergenic	L2a|LINE|L2	-1892	NM_001243212	643669		NM_001243212	ENSG00000262484	CCER2	-	coiled-coil glutamate rich protein 2	protein-coding
81655	chr16	10963571	10964500	+	0	NA	intron (NM_001243403, intron 3 of 20)	intron (NM_001243403, intron 3 of 20)	19471	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
183593	chr5	80190821	80191400	+	0	NA	intron (NM_001174072, intron 2 of 11)	LTR54|LTR|ERV1	64938	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
222928	chr8	143008101	143008300	+	0	NA	intron (NR_026913, intron 1 of 1)	L1PA13|LINE|L1	10190	NR_026913	100133669		NR_026913		LY6E-DT	-	LY6E divergent transcript	ncRNA
58301	chr12	130868051	130869580	+	0	NA	Intergenic	Intergenic	-3179	NM_001300796	5901		NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
22282	chr1	212754201	212754800	+	0	NA	intron (NM_015471, intron 4 of 5)	AluSq2|SINE|Alu	37277	NM_001297739	25936		NM_015471	ENSG00000117697	NSL1	C1orf48|DC8|MIS14	NSL1 component of MIS12 kinetochore complex	protein-coding
145555	chr20	44214971	44215630	+	0	NA	intron (NR_038337, intron 2 of 2)	L2|LINE|L2	4214	NR_038337	100505783		NR_038337	ENSG00000223891	OSER1-DT	OSER1-AS1	OSER1 divergent transcript	ncRNA
235340	chrX	44040951	44041050	+	0	NA	Intergenic	Intergenic	-67610	NM_000266	4693		NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	norrin cystine knot growth factor NDP	protein-coding
58972	chr13	19858701	19859480	+	0	NA	intron (NM_001039649, intron 2 of 4)	AluSq|SINE|Alu	4546	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
235875	chrX	51618401	51618600	+	0	NA	exon (NM_001355276, exon 1 of 1)	exon (NM_001355276, exon 1 of 1)	412	NM_001355276	347549		NM_001355276	ENSG00000224109	CENPVL3	CENPVP3	centromere protein V like 3	protein-coding
119329	chr19	39943271	39943430	+	0	NA	Intergenic	Intergenic	-8724	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
2055	chr1	7899721	7900180	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	40889	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
211751	chr7	107192871	107193550	+	0	NA	intron (NM_001244262, intron 8 of 10).2	intron (NM_001244262, intron 8 of 10).2	24207	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
77513	chr15	84669251	84669550	+	0	NA	TTS (NR_073518)	TTS (NR_073518)	-11201	NM_021077	4828		NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
221704	chr8	127178551	127178850	+	0	NA	Intergenic	Intergenic	18927	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
25428	chr10	6574671	6575430	+	0	NA	intron (NM_001323265, intron 1 of 17)	L2a|LINE|L2	5226	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
36526	chr11	6480971	6482330	+	0	NA	promoter-TSS (NM_001370409)	promoter-TSS (NM_001370409)	149	NM_012192	26515		NM_012192	ENSG00000132286	TIMM10B	FXC1|TIM10B|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding
86241	chr16	58199701	58199900	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-1694	NM_001896	1459		NM_001896	ENSG00000070770	CSNK2A2	CK2A2|CK2alpha'|CSNK2A1	casein kinase 2 alpha 2	protein-coding
124219	chr19	57239021	57239280	+	0	NA	Intergenic	AluJb|SINE|Alu	-1482	NM_001023563	390980		NM_001023563	ENSG00000204524	ZNF805	-	zinc finger protein 805	protein-coding
127266	chr2	38708901	38710630	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	41596	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
122584	chr19	49689101	49689300	+	0	NA	TTS (NM_198318)	TTS (NM_198318)	515	NM_001101340	199800		NM_001101340	ENSG00000224420	ADM5	AM5|C19orf76	adrenomedullin 5 (putative)	protein-coding
102475	chr17	75732051	75732580	+	0	NA	intron (NM_001005619, intron 11 of 38)	intron (NM_001005619, intron 11 of 38)	7619	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
37900	chr11	34065801	34066580	+	0	NA	intron (NM_203364, intron 2 of 17)	AluJb|SINE|Alu	14459	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
92286	chr17	8078851	8080800	+	0	NA	exon (NM_001139, exon 7 of 15)	exon (NM_001139, exon 7 of 15)	7891	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
186132	chr5	134154371	134154930	+	0	NA	3' UTR (NM_170679, exon 6 of 6)	3' UTR (NM_170679, exon 6 of 6)	22300	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
46544	chr11	128474671	128474900	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	47525	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
57528	chr12	122138671	122138830	+	0	NA	intron (NM_014938, intron 14 of 16)	intron (NM_014938, intron 14 of 16)	-28969	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
6101	chr1	27323901	27324300	+	0	NA	non-coding (NR_033926, exon 1 of 1)	non-coding (NR_033926, exon 1 of 1)	226	NR_033926	644961		NR_033926		ACTG1P20	-	actin gamma 1 pseudogene 20	pseudo
24400	chr1	243106251	243106350	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-4556	NR_029401	731275		NR_029401	ENSG00000291217	LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
31812	chr10	98664321	98664660	+	0	NA	intron (NM_001166244, intron 5 of 10)	L1PA16|LINE|L1	-217527	NM_001322477	3257		NM_000195	ENSG00000107521	HPS1	BLOC3S1|HPS	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding
166868	chr3	123563571	123563730	+	0	NA	intron (NM_001329784, intron 3 of 8)	(AC)n|Simple_repeat|Simple_repeat	20967	NM_001329787	201562		NM_198402	ENSG00000206527	HACD2	PTPLB	3-hydroxyacyl-CoA dehydratase 2	protein-coding
16696	chr1	155210251	155210350	+	0	NA	intron (NM_198883, intron 1 of 6)	intron (NM_198883, intron 1 of 6)	1601	NM_002455	4580		NM_002455	ENSG00000173171	MTX1	MTX|MTXN	metaxin 1	protein-coding
191385	chr6	7591821	7592230	+	0	NA	intron (NM_152551, intron 1 of 8)	L2c|LINE|L2	1827	NM_152551	154007		NM_152551	ENSG00000168566	SNRNP48	C6orf151|dJ336K20B.1|dJ512B11.2	small nuclear ribonucleoprotein U11/U12 subunit 48	protein-coding
182645	chr5	67162501	67163380	+	0	NA	intron (NM_015183, intron 27 of 27)	intron (NM_015183, intron 27 of 27)	33859	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
221953	chr8	129941651	129942000	+	0	NA	intron (NM_001353279, intron 2 of 13)	L3|LINE|CR1	-2014	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
72189	chr15	29949401	29950060	+	0	NA	intron (NM_001355012, intron 2 of 28).3	intron (NM_001355012, intron 2 of 28).3	19319	NM_001301025	7082		NM_003257	ENSG00000104067	TJP1	ZO-1	tight junction protein 1	protein-coding
237986	chrX	134459821	134461150	+	0	NA	intron (NM_000194, intron 1 of 8)	CpG	320	NM_000194	3251		NM_000194	ENSG00000165704	HPRT1	HGPRT|HPRT	hypoxanthine phosphoribosyltransferase 1	protein-coding
225618	chr9	36209701	36209900	+	0	NA	intron (NM_001076677, intron 5 of 5)	intron (NM_001076677, intron 5 of 5)	18879	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
24168	chr1	235873951	235874050	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	-7094	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
97270	chr17	43020171	43020530	+	0	NA	intron (NM_006373, intron 1 of 5)	intron (NM_006373, intron 1 of 5)	2035	NM_006373	10493		NM_006373	ENSG00000108828	VAT1	VATI	vesicle amine transport 1	protein-coding
52719	chr12	56597171	56599450	+	0	NA	3' UTR (NM_013449, exon 29 of 29)	3' UTR (NM_013449, exon 29 of 29)	32016	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
46052	chr11	122717071	122718030	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	61828	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
113136	chr19	8326521	8326880	+	0	NA	intron (NM_198471, intron 7 of 10)	AluY|SINE|Alu	5204	NM_001031	6234		NM_001031	ENSG00000233927	RPS28	DBA15|S28|eS28	ribosomal protein S28	protein-coding
220506	chr8	100649171	100649800	+	0	NA	exon (NM_152628, exon 1 of 14)	exon (NM_152628, exon 1 of 14)	180	NM_152628	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
759	chr1	1506951	1507250	+	0	NA	Intergenic	L1M3|LINE|L1	-5062	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
228252	chr9	97990201	97991000	+	0	NA	intron (NM_006401, intron 1 of 6)	intron (NM_006401, intron 1 of 6)	7259	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
202251	chr6	156931921	156932380	+	0	NA	intron (NM_001371656, intron 5 of 20)	intron (NM_001371656, intron 5 of 20)	-104277	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
213630	chr7	139634471	139634830	+	0	NA	intron (NM_022740, intron 2 of 14)	intron (NM_022740, intron 2 of 14)	110965	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
92073	chr17	7521721	7521980	+	0	NA	Intergenic	L1MB8|LINE|L1	-27208	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
102562	chr17	75852121	75852730	+	0	NA	intron (NM_012478, intron 1 of 7)	intron (NM_012478, intron 1 of 7)	2910	NM_012478	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
128561	chr2	60890071	60890530	+	0	NA	intron (NM_001291746, intron 1 of 9)	MIR|SINE|MIR	8726	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133361	chr2	117759051	117759150	+	0	NA	Intergenic	Intergenic	-55591	NM_006773	8886		NM_006773	ENSG00000088205	DDX18	Has1|MrDb	DEAD-box helicase 18	protein-coding
232778	chr9	136690101	136690750	+	0	NA	Intergenic	MIRb|SINE|MIR	-2968	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
24861	chr10	629471	629700	+	0	NA	intron (NR_147612, intron 1 of 1)	intron (NR_147612, intron 1 of 1)	1021	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
23611	chr1	230150121	230150380	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	83012	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
225485	chr9	35636101	35636500	+	0	NA	Intergenic	Intergenic	-9970	NR_135130	101926948		NR_135130		LOC101926948	-	uncharacterized LOC101926948	ncRNA
164189	chr3	56817051	56817150	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-15151	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
205574	chr7	21355271	21356530	+	0	NA	Intergenic	MIRb|SINE|MIR	-72183	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
224083	chr9	4325101	4325700	+	0	NA	Intergenic	Intergenic	-25332	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
10317	chr1	64886421	64887080	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	79799	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
198315	chr6	100737571	100737950	+	0	NA	intron (NM_001284271, intron 10 of 12)	L1PA11|LINE|L1	143569	NM_006828	10973		NM_006828	ENSG00000112249	ASCC3	ASC1p200|HELIC1|MRT81|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
221603	chr8	125526571	125526930	+	0	NA	Intergenic	LTR16|LTR|ERVL	94541	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
29804	chr10	72297901	72298730	+	0	NA	Intergenic	Intergenic	24391	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
78806	chr15	99501151	99501250	+	0	NA	Intergenic	Intergenic	-64217	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
149836	chr21	35035051	35035150	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	4326	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
48507	chr12	9869191	9870380	+	0	NA	promoter-TSS (NM_005127)	promoter-TSS (NM_005127)	74	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
75992	chr15	70561021	70561280	+	0	NA	Intergenic	Intergenic	25456	NR_135691	101929151		NR_135691	ENSG00000280639	LINC02204	-	long intergenic non-protein coding RNA 2204	ncRNA
22966	chr1	226068671	226069180	+	0	NA	intron (NR_002315, intron 3 of 3)	intron (NR_002315, intron 3 of 3)	6198	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
75823	chr15	69413521	69415150	+	0	NA	promoter-TSS (NM_138555)	promoter-TSS (NM_138555)	-14	NR_160295	9493		NM_004856	ENSG00000137807	KIF23	CDA3|CDAIII|CDAN3|CDAN3A|CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
149511	chr21	32708101	32708400	+	0	NA	intron (NM_203446, intron 2 of 32)	intron (NM_203446, intron 2 of 32)	19671	NM_001160306	8867		NM_003895	ENSG00000159082	SYNJ1	DEE53|EIEE53|INPP5G|PARK20	synaptojanin 1	protein-coding
74236	chr15	56740271	56740500	+	0	NA	Intergenic	LTR50|LTR|ERVL	-6299	NM_001002843	54816		NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
125226	chr2	10355351	10355850	+	0	NA	intron (NM_001258357, intron 1 of 4)	intron (NM_001258357, intron 1 of 4)	-13078	NM_001258358	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
84011	chr16	29461701	29461980	+	0	NA	intron (NM_001017390, intron 3 of 7).2	intron (NM_001017390, intron 3 of 7).2	1927	NM_001017390	445329		NM_001017389	ENSG00000213648	SULT1A4	HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|STM|TL-PST	sulfotransferase family 1A member 4	protein-coding
226141	chr9	63441621	63441880	+	0	NA	Intergenic	Intergenic	107212	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
36722	chr11	9165821	9166280	+	0	NA	intron (NM_001243254, intron 10 of 22)	intron (NM_001243254, intron 10 of 22)	71687	NR_027713	283102		NM_198473	ENSG00000213538	KRT8P41	-	keratin 8 pseudogene 41	pseudo
209091	chr7	74865951	74866900	+	0	NA	Intergenic	Intergenic	-14849	NM_173537	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
119590	chr19	40720251	40721030	+	0	NA	intron (NM_025194, intron 1 of 6)	intron (NM_025194, intron 1 of 6)	3528	NM_025194	80271		NM_025194	ENSG00000086544	ITPKC	IP3-3KC|IP3KC	inositol-trisphosphate 3-kinase C	protein-coding
88375	chr16	84599321	84600300	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	18268	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
159510	chr3	14404171	14404580	+	0	NA	intron (NR_103507, intron 1 of 13)	intron (NR_103507, intron 1 of 13)	1769	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
111266	chr19	3539171	3540680	+	0	NA	intron (NM_001135580, intron 1 of 3)	L1P3|LINE|L1	768	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
116793	chr19	18521401	18523350	+	0	NA	promoter-TSS (NM_006532)	promoter-TSS (NM_006532)	-305	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
156713	chr22	41780871	41781830	+	0	NA	exon (NM_152513, exon 23 of 31)	exon (NM_152513, exon 23 of 31)	-19329	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
58063	chr12	124538751	124539050	+	0	NA	intron (NM_001077261, intron 1 of 47)	MIRb|SINE|MIR	28712	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
100497	chr17	61940121	61940380	+	0	NA	Intergenic	AluSx|SINE|Alu	-12268	NM_001351695	57508		NM_020748	ENSG00000108506	INTS2	INT2|KIAA1287	integrator complex subunit 2	protein-coding
227751	chr9	93094201	93094550	+	0	NA	Intergenic	Intergenic	-1842	NM_032310	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
230499	chr9	128252321	128253550	+	0	NA	intron (NM_004408, intron 21 of 21)	intron (NM_004408, intron 21 of 21)	-7905	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
88423	chr16	84725951	84726900	+	0	NA	intron (NM_001272075, intron 2 of 14)	intron (NM_001272075, intron 2 of 14)	26425	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
217704	chr8	30135651	30136250	+	0	NA	intron (NM_001100916, intron 2 of 2)	intron (NM_001100916, intron 2 of 2)	8715	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
85406	chr16	50309021	50309600	+	0	NA	intron (NM_001114, intron 17 of 25)	intron (NM_001114, intron 17 of 25)	16694	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
201438	chr6	147227751	147228050	+	0	NA	intron (NM_139244, intron 2 of 25)	intron (NM_139244, intron 2 of 25)	-23286	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
191559	chr6	11723201	11723600	+	0	NA	exon (NM_001143948, exon 6 of 7)	exon (NM_001143948, exon 6 of 7)	55403	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
223065	chr8	143389001	143390180	+	0	NA	Intergenic	Intergenic	20714	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
208635	chr7	72991901	72992100	+	0	NA	Intergenic	Intergenic	13943	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
94139	chr17	28320671	28321030	+	0	NA	intron (NM_014573, intron 1 of 2)	MLT1D|LTR|ERVL-MaLR	1650	NM_014573	27346		NM_014573	ENSG00000109084	TMEM97	MAC30|S2R|sigma2R	transmembrane protein 97	protein-coding
92962	chr17	17072951	17073250	+	0	NA	intron (NM_015134, intron 1 of 22)	L1MB8|LINE|L1	30643	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
3344	chr1	15439971	15440430	+	0	NA	intron (NM_007272, intron 1 of 7)	MIRb|SINE|MIR	1757	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
100836	chr17	64118621	64118980	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	11344	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
182971	chr5	71469201	71469400	+	0	NA	intron (NM_018429, intron 6 of 38).3	AluSz|SINE|Alu	13649	NM_018429	55814		NM_018429	ENSG00000145734	BDP1	DFNB112|HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
147699	chr20	62327101	62327300	+	0	NA	intron (NM_005560, intron 38 of 79)	intron (NM_005560, intron 38 of 79)	5357	NR_039915	100616340		NR_039915	ENSG00000284074	MIR4758	-	microRNA 4758	ncRNA
75781	chr15	68793251	68793930	+	0	NA	intron (NM_006305, intron 1 of 6)	intron (NM_006305, intron 1 of 6)	8335	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
163531	chr3	51541171	51541330	+	0	NA	promoter-TSS (NM_001322257)	promoter-TSS (NM_001322257)	-339	NM_001322257	23132		NM_015106	ENSG00000164080	RAD54L2	ARIP4|HSPC325|SRISNF2L	RAD54 like 2	protein-coding
217953	chr8	38182871	38183230	+	0	NA	intron (NM_001204878, intron 1 of 3)	AluY|SINE|Alu	6195	NM_004874	9530		NM_004874	ENSG00000156735	BAG4	BAG-4|SODD	BAG cochaperone 4	protein-coding
71789	chr15	21712451	21714030	+	0	NA	Intergenic	HERVL32-int|LTR|ERVL	5067	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
51119	chr12	50087071	50087550	+	0	NA	intron (NM_139071, intron 4 of 11)	intron (NM_139071, intron 4 of 11)	1968	NM_003076	6602		NM_003076	ENSG00000066117	SMARCD1	BAF60A|CRACD1|CSS11|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding
55111	chr12	98519601	98521900	+	0	NA	intron (NM_001307975, intron 1 of 7)	AluY|SINE|Alu	-4524	NR_027157	100128191		NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
218398	chr8	47237971	47238130	+	0	NA	Intergenic	AluSg|SINE|Alu	-22828	NM_001352957	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
100511	chr17	62063801	62064400	+	0	NA	intron (NM_005121, intron 1 of 29)	intron (NM_005121, intron 1 of 29)	1178	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
126991	chr2	36780071	36780800	+	0	NA	intron (NM_001177970, intron 9 of 13)	intron (NM_001177970, intron 9 of 13)	83728	NM_053276	5212		NM_053276	ENSG00000205221	VIT	VIT1	vitrin	protein-coding
210010	chr7	93147251	93147780	+	0	NA	intron (NM_001350084, intron 1 of 5)	intron (NM_001350084, intron 1 of 5)	870	NM_152703	219285		NM_152703	ENSG00000177409	SAMD9L	ATXPC|C7DELq|C7orf6|DEL7q|DRIF2|M7MLS1|MLSM7|SCA49|UEF1	sterile alpha motif domain containing 9 like	protein-coding
110978	chr19	2975351	2975850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1964	NM_001143986	79816		NM_024760	ENSG00000104953	TLE6	GRG6|OZEMA15|PREMBL	TLE family member 6, subcortical maternal complex member	protein-coding
101109	chr17	65006701	65006900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-31215	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
11087	chr1	85281301	85281700	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-4868	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
231107	chr9	129809971	129810350	+	0	NA	non-coding (NR_133948, exon 5 of 5)	non-coding (NR_133948, exon 5 of 5)	6976	NM_001317894	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
163816	chr3	52440171	52440530	+	0	NA	intron (NM_020163, intron 10 of 15)	intron (NM_020163, intron 10 of 15)	4753	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
197112	chr6	57216051	57216580	+	0	NA	intron (NR_103822, intron 1 of 3)	L1ME1|LINE|L1	5146	NM_183227	51715		NM_016277	ENSG00000112210	RAB23	HSPC137	RAB23, member RAS oncogene family	protein-coding
220702	chr8	101701501	101701700	+	0	NA	intron (NM_032041, intron 2 of 3)	intron (NM_032041, intron 2 of 3)	89369	NM_032041	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
55818	chr12	108839821	108840080	+	0	NA	intron (NM_001161330, intron 2 of 13)	intron (NM_001161330, intron 2 of 13)	-2944	NR_030350	693204		NR_030350	ENSG00000207622	MIR619	MIRN619|hsa-mir-619	microRNA 619	ncRNA
80911	chr16	3748471	3748830	+	0	NA	intron (NM_004380, intron 21 of 30)	intron (NM_004380, intron 21 of 30)	-31126	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
102766	chr17	76286971	76287930	+	0	NA	intron (NM_032134, intron 6 of 18)	intron (NM_032134, intron 6 of 18)	20230	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
131735	chr2	98415951	98416250	+	0	NA	Intergenic	AluSz|SINE|Alu	-28487	NM_001351424	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
217603	chr8	29713201	29713430	+	0	NA	Intergenic	L1MD|LINE|L1	34794	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
38749	chr11	47038201	47038400	+	0	NA	intron (NR_103472, intron 2 of 7)	SVA_D|Retroposon|SVA	101539	NR_103472	79096		NM_024113	ENSG00000149179	CSTPP1	C11orf49	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	protein-coding
6038	chr1	27117971	27118330	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	36975	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
169175	chr3	156684421	156684850	+	0	NA	intron (NM_001184718, intron 2 of 5)	AluSp|SINE|Alu	7971	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
16859	chr1	155744101	155744450	+	0	NA	Intergenic	AluJb|SINE|Alu	-1493	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
156614	chr22	41571601	41572100	+	0	NA	5' UTR (NM_014460, exon 2 of 4)	5' UTR (NM_014460, exon 2 of 4)	10840	NM_014460	27254		NM_014460	ENSG00000172346	CSDC2	PIPPIN|dJ347H13.2	cold shock domain containing C2	protein-coding
116694	chr19	18428001	18430630	+	0	NA	intron (NM_032627, intron 4 of 17)	CpG	7994	NM_001253389	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
149497	chr21	32538151	32539130	+	0	NA	Intergenic	L1MA5|LINE|L1	46883	NM_144659	140290		NM_018277	ENSG00000242220	TCP10L	C21orf77|LINC00846|PRED77|TCP10A-1|TCP10A-2	t-complex 10 like	protein-coding
9075	chr1	44839251	44839550	+	0	NA	intron (NM_001166292, intron 2 of 22)	intron (NM_001166292, intron 2 of 22)	3544	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
214161	chr7	144777101	144777300	+	0	NA	intron (NR_146934, intron 1 of 6)	intron (NR_146934, intron 1 of 6)	-38302	NM_001350884	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
159767	chr3	16297951	16298450	+	0	NA	intron (NM_001352980, intron 7 of 9)	intron (NM_001352980, intron 7 of 9)	32988	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
234336	chrX	14872651	14873980	+	0	NA	promoter-TSS (NM_152633)	promoter-TSS (NM_152633)	-106	NM_152581	158747		NM_152581	ENSG00000130150	MOSPD2	-	motile sperm domain containing 2	protein-coding
145389	chr20	41329501	41330250	+	0	NA	Intergenic	Intergenic	-10946	NR_126051	64900		NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ620E11.2	lipin 3	protein-coding
34756	chr11	188501	188700	+	0	NA	Intergenic	L1M2|LINE|L1	-4478	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
201867	chr6	150632701	150634200	+	0	NA	intron (NR_138140, intron 1 of 2)	intron (NR_138140, intron 1 of 2)	486	NR_138140	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
194048	chr6	31848571	31849300	+	0	NA	Intergenic	AluSx1|SINE|Alu	11859	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
187480	chr5	142150071	142150430	+	0	NA	intron (NM_030571, intron 7 of 7)	intron (NM_030571, intron 7 of 7)	41471	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
131869	chr2	98710571	98711130	+	0	NA	intron (NM_012214, intron 2 of 15)	intron (NM_012214, intron 2 of 15)	20282	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
12500	chr1	108050371	108050530	+	0	NA	Intergenic	Intergenic	-85270	NM_006113	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
203656	chr7	988571	989130	+	0	NA	3' UTR (NM_017781, exon 9 of 9)	3' UTR (NM_017781, exon 9 of 9)	5669	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
39343	chr11	59283921	59284860	+	0	NA	Intergenic	Intergenic	-71463	NM_001039396	219972		NM_001039396	ENSG00000197629	MPEG1	IMD77|MPG1|MPS1|Mpg-1|P-2	macrophage expressed 1	protein-coding
227939	chr9	94376101	94376330	+	0	NA	intron (NM_032558, intron 1 of 11)	intron (NM_032558, intron 1 of 11)	1646	NM_032558	84641		NM_032558	ENSG00000148110	MFSD14B	HIATL1	major facilitator superfamily domain containing 14B	protein-coding
87787	chr16	75436371	75436730	+	0	NA	Intergenic	AluSg|SINE|Alu	-3047	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
103150	chr17	77413201	77413400	+	0	NA	intron (NM_001293696, intron 1 of 9)	L1MD|LINE|L1	8223	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
110034	chr19	1459151	1460000	+	0	NA	intron (NM_005883, intron 10 of 14)	intron (NM_005883, intron 10 of 14)	6591	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
144618	chr20	35849871	35850030	+	0	NA	intron (NM_016436, intron 4 of 17)	intron (NM_016436, intron 4 of 17)	77935	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
182308	chr5	58582771	58583230	+	0	NA	promoter-TSS (NM_138453)	promoter-TSS (NM_138453)	-75	NM_138453	115827		NM_138453	ENSG00000152932	RAB3C	-	RAB3C, member RAS oncogene family	protein-coding
120354	chr19	43592021	43592530	+	0	NA	exon (NM_001007561, exon 3 of 3)	exon (NM_001007561, exon 3 of 3)	3860	NM_001007561	126298		NM_001007561	ENSG00000167378	IRGQ	FKSG27|IRGQ1	immunity related GTPase Q	protein-coding
238131	chrX	136691971	136692280	+	0	NA	intron (NM_004840, intron 9 of 21)	Chap1_Mam|DNA|hAT-Charlie	43967	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
110301	chr19	1837171	1838230	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	10783	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
218366	chr8	43140081	43141930	+	0	NA	intron (NM_001363228, intron 1 of 15)	CpG	541	NM_001363228	138050		NM_025070	ENSG00000165102	HGSNAT	HGNAT|MPS3C|RP73|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
189567	chr5	175476151	175476650	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-2160	NM_001322978	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
61298	chr13	50234151	50234450	+	0	NA	intron (NR_109974, intron 2 of 6)	THE1A-int|LTR|ERVL-MaLR	62282	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
144485	chr20	35643371	35643730	+	0	NA	intron (NM_152926, intron 1 of 15)	AluSx|SINE|Alu	10359	NM_003915	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
102798	chr17	76389121	76390000	+	0	NA	3' UTR (NM_022066, exon 18 of 18)	3' UTR (NM_022066, exon 18 of 18)	4282	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
145083	chr20	38673871	38675080	+	0	NA	Intergenic	CpG	-50011	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
36214	chr11	3511651	3512750	+	0	NA	intron (NR_126335, intron 2 of 2)	HERVS71-int|LTR|ERV1	-35127	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
156136	chr22	40120771	40120930	+	0	NA	intron (NM_001024843, intron 2 of 23)	LTR79|LTR|ERVL	-57075	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
203906	chr7	1499551	1499650	+	0	NA	exon (NM_001080453, exon 6 of 48)	exon (NM_001080453, exon 6 of 48)	4789	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
167255	chr3	128584321	128584700	+	0	NA	Intergenic	Intergenic	-8424	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
148008	chr20	63048651	63050100	+	0	NA	intron (NR_033369, intron 2 of 5)	LTR16E1|LTR|ERVL	11364	NR_033369	100144597		NR_033369	ENSG00000237119	LINC01056	-	long intergenic non-protein coding RNA 1056	ncRNA
229375	chr9	121077521	121077780	+	0	NA	intron (NM_001369894, intron 1 of 29)	intron (NM_001369894, intron 1 of 29)	2695	NM_001369896	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
198426	chr6	106091071	106091430	+	0	NA	intron (NM_001198, intron 2 of 6)	intron (NM_001198, intron 2 of 6)	4914	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
23319	chr1	228091571	228091800	+	0	NA	intron (NM_001024227, intron 1 of 4)	Tigger8|DNA|TcMar-Tigger	-5578	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
172051	chr4	1016321	1016580	+	0	NA	intron (NM_001370296, intron 2 of 6)	intron (NM_001370296, intron 2 of 6)	3986	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
135594	chr2	166803421	166803750	+	0	NA	Intergenic	Intergenic	-84895	NM_152381	129446		NM_152381	ENSG00000163092	XIRP2	CMYA3	xin actin binding repeat containing 2	protein-coding
173	chr1	629111	631500	+	0	NA	Intergenic	Intergenic	-1296	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
76424	chr15	74787281	74788400	+	0	NA	promoter-TSS (NM_001354988)	promoter-TSS (NM_001354988)	-704	NM_001354988	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
229840	chr9	125828821	125829080	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	80767	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
13394	chr1	113947071	113947700	+	0	NA	intron (NM_198268, intron 2 of 15)	intron (NM_198268, intron 2 of 15)	-3760	NM_198269	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
31958	chr10	100724001	100724400	+	0	NA	Intergenic	CpG	-11196	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
186513	chr5	138347801	138348300	+	0	NA	3' UTR (NM_001350195, exon 5 of 5)	3' UTR (NM_001350195, exon 5 of 5)	-4635	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
85355	chr16	50244751	50244850	+	0	NA	Intergenic	Intergenic	-21751	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
133848	chr2	128276751	128277250	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	41868	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
189710	chr5	176523401	176524150	+	0	NA	Intergenic	AluJo|SINE|Alu	13627	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
155203	chr22	37841471	37841830	+	0	NA	intron (NM_001349853, intron 1 of 7)	AluSg|SINE|Alu	2198	NM_001363839	129138		NM_138797	ENSG00000100124	ANKRD54	LIAR	ankyrin repeat domain 54	protein-coding
224555	chr9	19404671	19405030	+	0	NA	Intergenic	Intergenic	-4159	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
117352	chr19	19541101	19542230	+	0	NA	intron (NM_153221, intron 4 of 7)	intron (NM_153221, intron 4 of 7)	3400	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
158288	chr22	50356921	50357650	+	0	NA	intron (NM_001351641, intron 1 of 23)	L1MEg|LINE|L1	13958	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
58609	chr12	132484021	132484430	+	0	NA	Intergenic	Intergenic	-5926	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171492	chr3	196577701	196577900	+	0	NA	exon (NM_001105573, exon 2 of 3)	exon (NM_001105573, exon 2 of 3)	-9126	NM_001345913	348793		NM_182627	ENSG00000185798	WDR53	-	WD repeat domain 53	protein-coding
105895	chr18	3280501	3280700	+	0	NA	Intergenic	AluSz6|SINE|Alu	17881	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
183020	chr5	73119501	73119700	+	0	NA	promoter-TSS (NM_001161342)	promoter-TSS (NM_001161342)	-975	NM_173490	134285		NM_173490	ENSG00000157111	TMEM171	PRP2	transmembrane protein 171	protein-coding
127032	chr2	37152501	37152700	+	0	NA	intron (NM_002759, intron 1 of 16)	L2|LINE|L2	4380	NM_001135651	5610		NM_002759	ENSG00000055332	EIF2AK2	DYT33|EIF2AK1|LEUDEN|PKR|PPP1R83|PRKR	eukaryotic translation initiation factor 2 alpha kinase 2	protein-coding
52207	chr12	54372951	54373250	+	0	NA	intron (NM_001290002, intron 5 of 8)	intron (NM_001290002, intron 5 of 8)	-8614	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
47560	chr12	4302321	4302580	+	0	NA	3' UTR (NM_001759, exon 5 of 5)	3' UTR (NM_001759, exon 5 of 5)	-18763	NM_020375	57103		NM_020375	ENSG00000078237	TIGAR	C12orf5|FR2BP	TP53 induced glycolysis regulatory phosphatase	protein-coding
111298	chr19	3585251	3585580	+	0	NA	promoter-TSS (NM_133261)	promoter-TSS (NM_133261)	-63	NM_133261	126326		NM_133261	ENSG00000179855	GIPC3	C19orf64|DFNB15|DFNB72|DFNB95	GIPC PDZ domain containing family member 3	protein-coding
151218	chr21	45227961	45228880	+	0	NA	Intergenic	MER63C|DNA|hAT-Blackjack	-5920	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
193500	chr6	30567301	30567500	+	0	NA	Intergenic	AluJr4|SINE|Alu	-4042	NM_001090	23		NM_001090	ENSG00000204574	ABCF1	ABC27|ABC50	ATP binding cassette subfamily F member 1	protein-coding
60303	chr13	40643251	40643800	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	23116	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
62866	chr13	110560871	110561030	+	0	NA	intron (NM_017817, intron 1 of 1)	MIR|SINE|MIR	772	NM_017817	55647		NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
210237	chr7	99375201	99375700	+	0	NA	intron (NM_005720, intron 1 of 9)	CpG	720	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
232495	chr9	136258871	136259030	+	0	NA	exon (NM_001378188, exon 22 of 26)	exon (NM_001378188, exon 22 of 26)	-13138	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
66001	chr14	58238351	58239020	+	0	NA	Intergenic	MER90a|LTR|ERV1	-6120	NR_038123	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
8196	chr1	39574601	39576200	+	0	NA	intron (NM_003819, intron 1 of 15)	intron (NM_003819, intron 1 of 15)	1390	NM_001135654	8761		NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
65732	chr14	53127771	53128450	+	0	NA	intron (NM_030637, intron 1 of 11)	THE1C|LTR|ERVL-MaLR	25213	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
47595	chr12	4856601	4856900	+	0	NA	Intergenic	Intergenic	47574	NM_002235	3742		NM_002235	ENSG00000151079	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel subfamily A member 6	protein-coding
166341	chr3	112969621	112970350	+	0	NA	intron (NM_138939, intron 1 of 3)	AluJb|SINE|Alu	5118	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
90006	chr16	89882521	89883080	+	0	NA	intron (NM_014972, intron 1 of 17)	AluSx1|SINE|Alu	9208	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
218730	chr8	58786521	58787030	+	0	NA	Intergenic	Intergenic	-126922	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
91708	chr17	6457221	6457850	+	0	NA	intron (NM_001165966, intron 18 of 18)	intron (NM_001165966, intron 18 of 18)	13080	NM_001195228	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
42956	chr11	73648821	73649280	+	0	NA	exon (NM_021200, exon 2 of 8)	exon (NM_021200, exon 2 of 8)	137	NM_001130036	58473		NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding
150672	chr21	43447421	43447830	+	0	NA	intron (NR_152722, intron 1 of 4).2	intron (NR_152722, intron 1 of 4).2	1024	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
4650	chr1	22139701	22140180	+	0	NA	intron (NM_030761, intron 1 of 4)	intron (NM_030761, intron 1 of 4)	3157	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
132383	chr2	105773751	105774400	+	0	NA	intron (NM_001004722, intron 1 of 3)	AluSz|SINE|Alu	29012	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
24902	chr10	1045671	1045830	+	0	NA	intron (NM_001317955, intron 2 of 5)	AluSx|SINE|Alu	3136	NM_001317957	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
224632	chr9	20579771	20580330	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	41888	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
113278	chr19	8529451	8529750	+	0	NA	intron (NM_012335, intron 21 of 27)	intron (NM_012335, intron 21 of 27)	-15433	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
28015	chr10	43199601	43199830	+	0	NA	exon (NM_145313, exon 7 of 13)	exon (NM_145313, exon 7 of 13)	30024	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
130085	chr2	74501271	74501850	+	0	NA	intron (NM_001009812, intron 1 of 1)	intron (NM_001009812, intron 1 of 1)	-1033	NR_152616	151534		NM_138482	ENSG00000257702	LBX2-AS1	-	LBX2 antisense RNA 1	ncRNA
65474	chr14	51859271	51859430	+	0	NA	Intergenic	Intergenic	-1262	NM_001243773	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
24371	chr1	241637621	241637880	+	0	NA	intron (NM_001381856, intron 1 of 1)	MIR3|SINE|MIR	-1556	NM_001821	1122		NM_001821	ENSG00000203668	CHML	REP2	CHM like Rab escort protein	protein-coding
37402	chr11	17209271	17209430	+	0	NA	Intergenic	Intergenic	-1364	NM_001321380	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
21346	chr1	204684371	204684730	+	0	NA	intron (NM_006338, intron 1 of 2)	intron (NM_006338, intron 1 of 2)	1188	NM_006338	10446		NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
139893	chr2	230710401	230710600	+	0	NA	Intergenic	AluJr|SINE|Alu	-2342	NM_016289	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
202314	chr6	157276971	157277130	+	0	NA	Intergenic	Intergenic	46469	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
166847	chr3	123200371	123200530	+	0	NA	Intergenic	L1ME3A|LINE|L1	-1493	NM_012430	26984		NM_012430	ENSG00000121542	SEC22A	SEC22L2	SEC22 homolog A, vesicle trafficking protein	protein-coding
188594	chr5	157172071	157173030	+	0	NA	Intergenic	Intergenic	-6286	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
30983	chr10	88064521	88065700	+	0	NA	Intergenic	Intergenic	201485	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
19332	chr1	173616751	173617250	+	0	NA	intron (NR_158771, intron 4 of 4)	L1PA11|LINE|L1	-13928	NM_178527	284525		NM_178527	ENSG00000162753	SLC9C2	NHE11|SLC9A11	solute carrier family 9 member C2 (putative)	protein-coding
173472	chr4	8963521	8963780	+	0	NA	Intergenic	CpG	-91811	NM_001306142	3166		NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
2984	chr1	12009171	12010000	+	0	NA	intron (NM_014874, intron 17 of 18)	intron (NM_014874, intron 17 of 18)	-9913	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
70740	chr14	103382251	103383130	+	0	NA	Intergenic	Intergenic	-2674	NM_001128919	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
86812	chr16	67848521	67848780	+	0	NA	promoter-TSS (NM_025082)	promoter-TSS (NM_025082)	-957	NM_025082	80152		NM_025082	ENSG00000102901	CENPT	C16orf56|CENP-T|SSMGA	centromere protein T	protein-coding
58470	chr12	132140901	132141100	+	0	NA	exon (NM_175066, exon 9 of 15)	exon (NM_175066, exon 9 of 15)	3319	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
23117	chr1	226687121	226687880	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-12432	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
110807	chr19	2467951	2468250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5915	NR_134931	101928602		NR_134931	ENSG00000267201	LINC01775	-	long intergenic non-protein coding RNA 1775	ncRNA
94906	chr17	31825921	31826180	+	0	NA	Intergenic	Intergenic	32912	NM_001330176	55352		NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
26973	chr10	26725951	26726680	+	0	NA	intron (NM_001321978, intron 8 of 9)	intron (NM_001321978, intron 8 of 9)	28614	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
146265	chr20	49005651	49005750	+	0	NA	intron (NM_006420, intron 26 of 38)	AluY|SINE|Alu	40356	NR_110625	102723483		NR_110624	ENSG00000227431	CSE1L-DT	CSE1L-AS1	CSE1L divergent transcript	ncRNA
20002	chr1	185284671	185285230	+	0	NA	intron (NM_017673, intron 18 of 18)	MER76|LTR|ERVL	32293	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
147970	chr20	62981751	62981850	+	0	NA	Intergenic	Intergenic	25164	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
201361	chr6	144673421	144673680	+	0	NA	intron (NM_001375323, intron 1 of 24)	L1PB1|LINE|L1	90402	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
91342	chr17	4483651	4484350	+	0	NA	intron (NM_001320449, intron 8 of 10)	intron (NM_001320449, intron 8 of 10)	-14881	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
82122	chr16	14712571	14713050	+	0	NA	intron (NM_001277324, intron 1 of 7)	AluJb|SINE|Alu	1121	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
212165	chr7	116871271	116871630	+	0	NA	intron (NM_006136, intron 1 of 9)	MIRb|SINE|MIR	8863	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
34276	chr10	131904551	131905380	+	0	NA	intron (NR_033191, intron 2 of 9)	intron (NR_033191, intron 2 of 9)	3957	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
31241	chr10	91908121	91909570	+	0	NA	exon (NM_152429, exon 2 of 2)	exon (NM_152429, exon 2 of 2)	641	NM_152429	143282		NM_152429	ENSG00000174721	FGFBP3	C10orf13|FGF-BP3	fibroblast growth factor binding protein 3	protein-coding
81526	chr16	9089921	9092100	+	0	NA	promoter-TSS (NM_014117)	promoter-TSS (NM_014117)	-634	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
35249	chr11	853551	853800	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	9229	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
50439	chr12	47704071	47704630	+	0	NA	intron (NM_001146075, intron 1 of 15)	intron (NM_001146075, intron 1 of 15)	1680	NM_024604	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
184975	chr5	113512071	113512580	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-1369	NM_022828	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
173565	chr4	10102021	10102280	+	0	NA	intron (NM_017491, intron 3 of 14)	intron (NM_017491, intron 3 of 14)	14649	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
36655	chr11	8017101	8017730	+	0	NA	promoter-TSS (NR_125366)	promoter-TSS (NR_125366)	-906	NR_125366	103581031		NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility 23	ncRNA
157971	chr22	49820321	49821050	+	0	NA	intron (NM_001349940, intron 1 of 12)	intron (NM_001349940, intron 1 of 12)	3646	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
34083	chr10	125146771	125147330	+	0	NA	intron (NM_001290214, intron 1 of 10)	intron (NM_001290214, intron 1 of 10)	11727	NM_001321013	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
107598	chr18	48913071	48914130	+	0	NA	Intergenic	Intergenic	29207	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
114309	chr19	11924201	11926130	+	0	NA	promoter-TSS (NM_001271848)	promoter-TSS (NM_001271848)	58	NM_144566	90592		NM_144566	ENSG00000196757	ZNF700	-	zinc finger protein 700	protein-coding
78281	chr15	90879201	90880900	+	0	NA	intron (NR_168464, intron 12 of 15)	intron (NR_168464, intron 12 of 15)	-4454	NM_002005	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
158693	chr3	5220201	5220400	+	0	NA	TTS (NM_014674)	TTS (NM_014674)	29955	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
232982	chr9	136980051	136980780	+	0	NA	intron (NM_000954, intron 5 of 6)	intron (NM_000954, intron 5 of 6)	-2578	NM_207510	401562		NM_207510	ENSG00000214402	LCNL1	-	lipocalin like 1	protein-coding
118613	chr19	36837221	36839000	+	0	NA	promoter-TSS (NM_001242802)	promoter-TSS (NM_001242802)	-83	NM_001242802	388536		NM_206894	ENSG00000197863	ZNF790	-	zinc finger protein 790	protein-coding
73506	chr15	43768551	43769130	+	0	NA	intron (NM_005313, intron 9 of 12)	AluSq2|SINE|Alu	8126	NM_025165	80237		NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
77704	chr15	85686101	85686300	+	0	NA	intron (NM_007200, intron 16 of 36)	intron (NM_007200, intron 16 of 36)	66250	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
43807	chr11	86511021	86511280	+	0	NA	intron (NR_147828, intron 4 of 14)	L2c|LINE|L2	136263	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
83079	chr16	22372901	22375300	+	0	NA	promoter-TSS (NR_148970)	promoter-TSS (NR_148970)	519	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
142481	chr20	4613851	4614300	+	0	NA	Intergenic	Intergenic	-72381	NM_000311	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
46583	chr11	128511671	128511900	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	10525	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
13024	chr1	111205371	111205530	+	0	NA	promoter-TSS (NM_001271833)	promoter-TSS (NM_001271833)	-912	NM_001271833	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
178915	chr4	158768021	158769980	+	0	NA	promoter-TSS (NM_001346043)	promoter-TSS (NM_001346043)	-26	NM_020840	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
232213	chr9	134365321	134365580	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-13845	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
174055	chr4	26890621	26891180	+	0	NA	intron (NM_020860, intron 1 of 11)	ERVL-B4-int|LTR|ERVL	30059	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
175453	chr4	71275551	71275950	+	0	NA	intron (NM_001134742, intron 3 of 24)	MIR3|SINE|MIR	-63270	NM_003759	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
207189	chr7	43624051	43624350	+	0	NA	intron (NM_004760, intron 6 of 6)	intron (NM_004760, intron 6 of 6)	41092	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
47829	chr12	6596601	6597000	+	0	NA	intron (NM_001273, intron 12 of 39)	AluSx1|SINE|Alu	9651	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
137187	chr2	191140551	191140850	+	0	NA	intron (NM_003151, intron 3 of 23)	L1PB2|LINE|L1	10294	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
125077	chr2	9663271	9663830	+	0	NA	Intergenic	Intergenic	-32553	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
210169	chr7	98365221	98365300	+	0	NA	intron (NM_018842, intron 1 of 13)	HAL1|LINE|L1	35830	NM_018842	55971		NM_018842	ENSG00000006453	BAIAP2L1	IRTKS	BAR/IMD domain containing adaptor protein 2 like 1	protein-coding
196451	chr6	43506371	43507600	+	0	NA	TTS (NR_027394)	TTS (NR_027394)	3358	NM_001012974	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
114003	chr19	10860801	10861880	+	0	NA	intron (NM_001136482, intron 5 of 6)	intron (NM_001136482, intron 5 of 6)	-10213	NM_199141	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
213937	chr7	142646021	142646480	+	0	NA	intron (NM_001363538, intron 10 of 11)	intron (NM_001363538, intron 10 of 11)	-20049	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
66873	chr14	65080101	65080500	+	0	NA	intron (NM_145113, intron 3 of 5)	intron (NM_145113, intron 3 of 5)	-9618	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
115405	chr19	15286851	15288050	+	0	NA	intron (NM_001379291, intron 1 of 19)	FLAM_C|SINE|Alu	-6999	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
9027	chr1	44773951	44774250	+	0	NA	Intergenic	L1MA1|LINE|L1	-1440	NM_001012	6202		NM_001012	ENSG00000142937	RPS8	S8|eS8	ribosomal protein S8	protein-coding
105722	chr18	2712951	2713250	+	0	NA	intron (NM_015295, intron 17 of 47)	MER58B|DNA|hAT-Charlie	57374	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
2252	chr1	8905651	8905950	+	0	NA	Intergenic	Intergenic	26965	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
55450	chr12	104599021	104599280	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	7517	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
111683	chr19	4266001	4266580	+	0	NA	intron (NM_018074, intron 6 of 7)	intron (NM_018074, intron 6 of 7)	-12779	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
102284	chr17	75317101	75317930	+	0	NA	TTS (NM_002086)	TTS (NM_002086)	-28066	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
107566	chr18	48820001	48820200	+	0	NA	intron (NM_014772, intron 10 of 11)	MIRc|SINE|MIR	122707	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
84640	chr16	30715321	30716350	+	0	NA	intron (NM_006662, intron 16 of 33)	L2c|LINE|L2	5298	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
152480	chr22	20810321	20811380	+	0	NA	intron (NM_001362863, intron 8 of 53)	intron (NM_001362863, intron 8 of 53)	36737	NM_000185	3053		NM_000185	ENSG00000099937	SERPIND1	D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10	serpin family D member 1	protein-coding
3090	chr1	12196971	12197130	+	0	NA	intron (NM_001066, intron 8 of 9)	AluSz6|SINE|Alu	5337	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
110586	chr19	2161801	2162150	+	0	NA	Intergenic	Intergenic	-1958	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
157308	chr22	44494351	44495200	+	0	NA	3' UTR (NM_032287, exon 2 of 2)	3' UTR (NM_032287, exon 2 of 2)	3458	NM_032287	84247		NM_032287	ENSG00000188636	RTL6	LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2	retrotransposon Gag like 6	protein-coding
51317	chr12	51322171	51322620	+	0	NA	intron (NM_001290007, intron 1 of 12)	AluJb|SINE|Alu	1779	NM_001290009	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
104519	chr17	81237071	81237230	+	0	NA	intron (NM_144679, intron 2 of 11)	intron (NM_144679, intron 2 of 11)	1905	NM_144679	146705		NM_144679	ENSG00000167302	TEPSIN	C17orf56|ENTHD2	TEPSIN adaptor related protein complex 4 accessory protein	protein-coding
171985	chr4	930001	930530	+	0	NA	intron (NM_005255, intron 1 of 27)	intron (NM_005255, intron 1 of 27)	2051	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
234517	chrX	19549651	19549750	+	0	NA	intron (NM_001353893, intron 14 of 17)	intron (NM_001353893, intron 14 of 17)	-34439	NM_001001671	389840		NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
94337	chr17	28850171	28850330	+	0	NA	Intergenic	Intergenic	-4766	NM_001317985	26284		NM_005702	ENSG00000132591	ERAL1	CEGA|ERA|ERA-W|ERAL1A|ERAL1B|H-ERA|HERA-A|HERA-B|PRLTS6	Era like 12S mitochondrial rRNA chaperone 1	protein-coding
68232	chr14	76948271	76948780	+	0	NA	Intergenic	LTR33|LTR|ERVL	-11113	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
132089	chr2	101307801	101309080	+	0	NA	exon (NM_173647, exon 1 of 7)	exon (NM_173647, exon 1 of 7)	261	NM_173647	284996		NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
144992	chr20	37411251	37411750	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	65360	NM_198291	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
202087	chr6	154302171	154302480	+	0	NA	intron (NM_001130700, intron 1 of 11)	intron (NM_001130700, intron 1 of 11)	27756	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
27550	chr10	32339251	32339800	+	0	NA	intron (NR_168508, intron 1 of 12)	AluSz6|SINE|Alu	7633	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
173104	chr4	6338171	6338750	+	0	NA	intron (NM_001206995, intron 7 of 9)	intron (NM_001206995, intron 7 of 9)	43408	NM_181876	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
148464	chr20	64034771	64036000	+	0	NA	5' UTR (NM_001348090, exon 3 of 7)	5' UTR (NM_001348090, exon 3 of 7)	1658	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
234491	chrX	18885351	18887280	+	0	NA	Intergenic	Intergenic	-3981	NR_029379	100132163		NR_029379		PHKA2-AS1	-	PHKA2 antisense RNA 1	ncRNA
118714	chr19	38227251	38227430	+	0	NA	intron (NM_001363579, intron 1 of 11)	AluJb|SINE|Alu	2355	NM_001363579	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
158794	chr3	9650971	9651430	+	0	NA	intron (NM_022485, intron 1 of 16)	AluJo|SINE|Alu	1695	NM_022485	64419		NM_022485	ENSG00000163719	MTMR14	C3orf29	myotubularin related protein 14	protein-coding
6994	chr1	31829571	31829930	+	0	NA	Intergenic	Intergenic	-13699	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
234760	chrX	23742731	23743730	+	0	NA	promoter-TSS (NM_001037171)	promoter-TSS (NM_001037171)	46	NM_001330259	23597		NM_012332	ENSG00000123130	ACOT9	ACATE2|CGI-16|MT-ACT48|MTACT48	acyl-CoA thioesterase 9	protein-coding
166525	chr3	114454021	114454350	+	0	NA	intron (NR_121661, intron 1 of 2)	GA-rich|Low_complexity|Low_complexity	592	NR_121661	101929754		NR_121661	ENSG00000242290	ZBTB20-AS5	-	ZBTB20 antisense RNA 5	ncRNA
108261	chr18	63236921	63237380	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	82619	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
122262	chr19	49053271	49053430	+	0	NA	TTS (NM_001385261)	TTS (NM_001385261)	-4239	NM_033183	94115		NM_033183	ENSG00000213030	CGB8	-	chorionic gonadotropin subunit beta 8	protein-coding
53146	chr12	57887971	57888780	+	0	NA	intron (NR_148947, intron 1 of 3)	intron (NR_148947, intron 1 of 3)	8107	NR_148947	283387		NR_148947	ENSG00000245651	LOC283387	-	uncharacterized LOC283387	ncRNA
200206	chr6	131206101	131206850	+	0	NA	intron (NR_164834, intron 8 of 9)	(TGA)n|Simple_repeat|Simple_repeat	-43929	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
8234	chr1	39696121	39696930	+	0	NA	Intergenic	Intergenic	-5040	NM_001282397	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
9112	chr1	45326651	45328400	+	0	NA	exon (NM_032756, exon 1 of 1)	exon (NM_032756, exon 1 of 1)	630	NM_032756	84842		NM_032756	ENSG00000186603	HPDL	4-HPPD-L|GLOXD1|NEDSWMA|SPG83	4-hydroxyphenylpyruvate dioxygenase like	protein-coding
64802	chr14	34929971	34930800	+	0	NA	intron (NR_151701, intron 2 of 4)	intron (NR_151701, intron 2 of 4)	-9537	NR_002937	280655		NR_002937		IGBP1P1	C14orf19	IGBP1 pseudogene 1	pseudo
222551	chr8	140603901	140604100	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	31633	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
208552	chr7	70779401	70779600	+	0	NA	intron (NM_015570, intron 14 of 18)	intron (NM_015570, intron 14 of 18)	-352644	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
212504	chr7	128657551	128657950	+	0	NA	non-coding (NR_024368, exon 5 of 5)	non-coding (NR_024368, exon 5 of 5)	-14516	NM_001128926	346653		NM_001012454	ENSG00000205085	GARIN1A	FAM137B|FAM71F2|GARI	golgi associated RAB2 interactor 1A	protein-coding
3400	chr1	15741171	15741800	+	0	NA	TTS (NM_207348)	TTS (NM_207348)	-1014	NM_001013641	388595		NM_001013641	ENSG00000162460	TMEM82	-	transmembrane protein 82	protein-coding
102330	chr17	75403701	75404600	+	0	NA	intron (NM_203506, intron 1 of 4)	intron (NM_203506, intron 1 of 4)	1528	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
111784	chr19	4442121	4442680	+	0	NA	intron (NM_005483, intron 14 of 14)	intron (NM_005483, intron 14 of 14)	-3578	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
68454	chr14	83834321	83834400	+	0	NA	Intergenic	MLT2D|LTR|ERVL	1191728	NR_146650	101928599		NR_146650	ENSG00000258743	LINC02301	-	long intergenic non-protein coding RNA 2301	ncRNA
225274	chr9	34437421	34438350	+	0	NA	intron (NM_001184942, intron 1 of 5)	LTR12C|LTR|ERV1	20685	NM_001184942	203259		NM_147202	ENSG00000164970	FAM219A	C9orf25	family with sequence similarity 219 member A	protein-coding
136241	chr2	174607571	174607730	+	0	NA	intron (NM_001077269, intron 1 of 7)	L2a|LINE|L2	-9419	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
116377	chr19	17937251	17937550	+	0	NA	intron (NM_138442, intron 2 of 4)	intron (NM_138442, intron 2 of 4)	2304	NM_138442	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
217447	chr8	28621051	28621350	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	80264	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
235126	chrX	40781151	40781250	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	45510	NR_169211	100873985		NM_001289773		MED14OS	MED14-AS1	MED14 opposite strand	ncRNA
221331	chr8	123098521	123099250	+	0	NA	intron (NM_145647, intron 6 of 21)	intron (NM_145647, intron 6 of 21)	25636	NM_001363149	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
1881	chr1	6430851	6431180	+	0	NA	intron (NM_031475, intron 2 of 12)	intron (NM_031475, intron 2 of 12)	-1119	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
200153	chr6	130381271	130382280	+	0	NA	intron (NM_001258276, intron 1 of 1)	intron (NM_001258276, intron 1 of 1)	15494	NM_001258276	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
153399	chr22	24802021	24802300	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	-4051	NM_001098497	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
113319	chr19	8584651	8585250	+	0	NA	exon (NM_001282352, exon 12 of 13)	exon (NM_001282352, exon 12 of 13)	7246	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
135620	chr2	168182921	168183180	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	64545	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
46685	chr11	128751401	128751600	+	0	NA	intron (NM_001167681, intron 2 of 9)	AluJb|SINE|Alu	-55477	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
168107	chr3	138593671	138595030	+	0	NA	promoter-TSS (NM_001288964)	promoter-TSS (NM_001288964)	33	NM_001288966	80321		NM_024491	ENSG00000114107	CEP70	BITE	centrosomal protein 70	protein-coding
224684	chr9	21252951	21253430	+	0	NA	Intergenic	Intergenic	-13185	NM_002172	3448		NM_002172	ENSG00000228083	IFNA14	IFN-alphaH|LEIF2H	interferon alpha 14	protein-coding
176433	chr4	89272501	89272700	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	35200	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
44053	chr11	95226071	95226650	+	0	NA	intron (NM_001271594, intron 1 of 8)	intron (NM_001271594, intron 1 of 8)	-3826	NR_110295	100129203		NR_110295	ENSG00000245552	LOC100129203	-	uncharacterized LOC100129203	ncRNA
59950	chr13	31228021	31228280	+	0	NA	intron (NM_194318, intron 3 of 14)	intron (NM_194318, intron 3 of 14)	28175	NM_194318	145173		NM_194318	ENSG00000187676	B3GLCT	B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	beta 3-glucosyltransferase	protein-coding
221004	chr8	115667901	115669730	+	0	NA	promoter-TSS (NM_001282902)	promoter-TSS (NM_001282902)	160	NM_014112	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
101550	chr17	68010851	68011580	+	0	NA	Intergenic	Intergenic	-14746	NM_001382359	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
211051	chr7	102458521	102458780	+	0	NA	intron (NM_017621, intron 2 of 2)	AluJb|SINE|Alu	6213	NM_017621	54784		NM_017621	ENSG00000160993	ALKBH4	ABH4	alkB homolog 4, lysine demethylase	protein-coding
107178	chr18	35577171	35577730	+	0	NA	Intergenic	Intergenic	-3472	NM_001384438	2589		NM_020474	ENSG00000141429	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
58902	chr13	19639051	19639150	+	0	NA	intron (NM_017520, intron 1 of 13)	LTR38A1|LTR|ERV1	5441	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
195431	chr6	36958371	36958730	+	0	NA	intron (NM_153370, intron 1 of 6)	intron (NM_153370, intron 1 of 6)	3812	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
23159	chr1	226731801	226732480	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	7035	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
55896	chr12	109723351	109723800	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	9750	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
19045	chr1	169699551	169700630	+	0	NA	intron (NM_000655, intron 7 of 8)	intron (NM_000655, intron 7 of 8)	8767	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
180344	chr5	6717351	6717450	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	3968	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
214981	chr7	152128571	152128730	+	0	NA	Intergenic	AluSx3|SINE|Alu	53613	NM_001371474	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
58371	chr12	131755321	131755650	+	0	NA	intron (NM_001261411, intron 10 of 18)	intron (NM_001261411, intron 10 of 18)	44395	NM_001261411	6433		NM_004592	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor SWAP	protein-coding
197263	chr6	70566271	70567580	+	0	NA	promoter-TSS (NM_145267)	promoter-TSS (NM_145267)	-5	NM_145267	135154		NM_145267	ENSG00000154079	SDHAF4	C6orf57|Sdh8	succinate dehydrogenase complex assembly factor 4	protein-coding
7965	chr1	37755271	37755630	+	0	NA	intron (NM_001099439, intron 3 of 16)	intron (NM_001099439, intron 3 of 16)	9670	NM_001099439	284656		NM_173641	ENSG00000183317	EPHA10	DFNA88	EPH receptor A10	protein-coding
54015	chr12	75484271	75484800	+	0	NA	intron (NM_006851, intron 2 of 5)	LTR7|LTR|ERV1	3780	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
219649	chr8	80376171	80376630	+	0	NA	Intergenic	L1ME2|LINE|L1	-109193	NM_001277145	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
233886	chrX	1586721	1586980	+	0	NA	Intergenic	MLT1E|LTR|ERVL-MaLR	-4754	NR_027383	8227		NM_005088	ENSG00000197976	AKAP17A	721P|AKAP-17A|CCDC133|CXYorf3|DXYS155E|PRKA17A|SFRS17A|XE7|XE7Y	A-kinase anchoring protein 17A	protein-coding
73434	chr15	43142901	43143300	+	0	NA	intron (NM_001347034, intron 3 of 10)	AluSz6|SINE|Alu	9514	NM_024956	80021		NM_024956	ENSG00000137842	TMEM62	-	transmembrane protein 62	protein-coding
29874	chr10	72676351	72676850	+	0	NA	Intergenic	Intergenic	-15531	NM_138357	90550		NM_138357	ENSG00000156026	MCU	C10orf42|CCDC109A|HsMCU	mitochondrial calcium uniporter	protein-coding
204662	chr7	5451721	5452130	+	0	NA	Intergenic	Intergenic	-22998	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
224783	chr9	22052501	22053130	+	0	NA	intron (NR_120536, intron 3 of 3)	intron (NR_120536, intron 3 of 3)	-43502	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
91035	chr17	2847901	2848200	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	51612	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
85115	chr16	34160111	34160550	+	0	NA	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-3248	NR_162093	113218496		NR_162093		MIR9901	-	microRNA 9901	ncRNA
188174	chr5	150482721	150483180	+	0	NA	intron (NR_105061, intron 2 of 2)	intron (NR_105061, intron 2 of 2)	3042	NR_105061	102546298		NR_105061	ENSG00000254333	NDST1-AS1	-	NDST1 antisense RNA 1	ncRNA
40953	chr11	65332351	65332800	+	0	NA	Intergenic	AluY|SINE|Alu	-1277	NM_006268	5977		NM_006268	ENSG00000133884	DPF2	CSS7|REQ|SMARCG2|UBID4|ubi-d4	double PHD fingers 2	protein-coding
232078	chr9	133534371	133535400	+	0	NA	5' UTR (NM_014694, exon 1 of 19)	5' UTR (NM_014694, exon 1 of 19)	181	NM_014694	9719		NM_014694	ENSG00000197859	ADAMTSL2	ADAMTSL-2|GPHYSD1	ADAMTS like 2	protein-coding
223476	chr8	144051901	144053250	+	0	NA	exon (NM_017570, exon 23 of 27)	exon (NM_017570, exon 23 of 27)	3177	NR_158554	392275		NR_158554		SMPD5	MA-nSMase	sphingomyelin phosphodiesterase 5 (pseudogene)	pseudo
92003	chr17	7448301	7449800	+	0	NA	intron (NM_000747, intron 7 of 10)	intron (NM_000747, intron 7 of 10)	3989	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
137355	chr2	196154221	196154880	+	0	NA	intron (NM_004226, intron 3 of 7)	L1MC4|LINE|L1	17028	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
132910	chr2	111414921	111415180	+	0	NA	intron (NR_136161, intron 1 of 5)	MER58A|DNA|hAT-Charlie	80111	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
4422	chr1	21258051	21258780	+	0	NA	intron (NM_001397, intron 6 of 18)	intron (NM_001397, intron 6 of 18)	21200	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
97200	chr17	42693451	42693550	+	0	NA	exon (NM_003632, exon 18 of 24)	exon (NM_003632, exon 18 of 24)	10969	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
32986	chr10	110512401	110513330	+	0	NA	Intergenic	Intergenic	14958	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
6544	chr1	28602571	28603050	+	0	NA	TTS (NM_001135218)	TTS (NM_001135218)	10545	NM_001385188	115273		NM_152304	ENSG00000188060	RAB42	-	RAB42, member RAS oncogene family	protein-coding
212492	chr7	128559371	128559730	+	0	NA	Intergenic	Intergenic	-81691	NR_024368	402483		NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
24470	chr1	244051001	244051430	+	0	NA	promoter-TSS (NM_205768)	promoter-TSS (NM_205768)	-68	NM_205768	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
81082	chr16	4344101	4345780	+	0	NA	intron (NM_001201479, intron 27 of 30)	L2c|LINE|L2	6381	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
73252	chr15	41810571	41810830	+	0	NA	intron (NM_014994, intron 3 of 30)	AluJb|SINE|Alu	-17385	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
162666	chr3	48919701	48920680	+	0	NA	promoter-TSS (NR_161301)	promoter-TSS (NR_161301)	-805	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
174636	chr4	40325171	40325850	+	0	NA	intron (NR_121640, intron 1 of 2)	intron (NR_121640, intron 1 of 2)	9026	NR_121640	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
69627	chr14	97704271	97704780	+	0	NA	Intergenic	L3|LINE|CR1	-17867	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
121207	chr19	46607451	46607750	+	0	NA	intron (NM_001329926, intron 2 of 5)	intron (NM_001329926, intron 2 of 5)	5528	NM_001329922	808		NM_005184	ENSG00000160014	CALM3	CALM|CAM1|CAM2|CAMB|CPVT6|CaM|CaMIII|HEL-S-72|LQT16|PHKD|PHKD3	calmodulin 3	protein-coding
191100	chr6	3915221	3915900	+	0	NA	Intergenic	MER54A|LTR|ERVL	66187	NM_012135	26240		NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
37970	chr11	34727471	34727830	+	0	NA	Intergenic	Intergenic	85278	NM_001378046	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
50915	chr12	49320471	49321030	+	0	NA	intron (NR_120449, intron 2 of 7)	AluSx1|SINE|Alu	-2505	NM_001278324	10024		NM_005480	ENSG00000135451	TROAP	TASTIN	trophinin associated protein	protein-coding
165400	chr3	97764021	97765150	+	0	NA	promoter-TSS (NM_032146)	promoter-TSS (NM_032146)	64	NM_177976	84100		NM_032146	ENSG00000113966	ARL6	BBS3|RP55	ADP ribosylation factor like GTPase 6	protein-coding
151346	chr21	45641271	45641700	+	0	NA	Intergenic	Intergenic	-2240	NM_001382287	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
232934	chr9	136905301	136905500	+	0	NA	intron (NM_021138, intron 4 of 10)	L1MB3|LINE|L1	18667	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
12329	chr1	101006701	101006900	+	0	NA	intron (NM_015958, intron 4 of 7)	intron (NM_015958, intron 4 of 7)	18984	NM_001077395	51611		NM_015958	ENSG00000117543	DPH5	AD-018|CGI-30|HSPC143|NEDSFF|NPD015	diphthamide biosynthesis 5	protein-coding
213289	chr7	134985071	134985530	+	0	NA	Intergenic	MIR3|SINE|MIR	-1208	NM_001367817	340351		NM_178563	ENSG00000146856	AGBL3	CCP3	AGBL carboxypeptidase 3	protein-coding
82374	chr16	16023901	16024100	+	0	NA	intron (NM_004996, intron 5 of 30)	AluSx|SINE|Alu	74384	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
140258	chr2	232286121	232286780	+	0	NA	intron (NR_046477, intron 12 of 18)	intron (NR_046477, intron 12 of 18)	-92301	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
57294	chr12	121649321	121650550	+	0	NA	3' UTR (NM_001363685, exon 7 of 7)	3' UTR (NM_001363685, exon 7 of 7)	19719	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
146427	chr20	49595821	49596580	+	0	NA	Intergenic	Intergenic	-28063	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
119624	chr19	40789201	40789500	+	0	NA	intron (NR_037791, intron 7 of 11)	AluSp|SINE|Alu	-9841	NM_080732	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
69974	chr14	99853351	99853450	+	0	NA	intron (NM_001375411, intron 2 of 21)	intron (NM_001375411, intron 2 of 21)	59987	NM_001375412	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
122360	chr19	49340271	49341500	+	0	NA	TTS (NM_001040031)	TTS (NM_001040031)	5479	NM_001040031	951		NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
43678	chr11	85805351	85805550	+	0	NA	intron (NM_032943, intron 1 of 18)	MamSINE1|SINE|tRNA-RTE	5691	NM_001365827	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
92669	chr17	10844901	10845340	+	0	NA	Intergenic	Intergenic	-7033	NM_001101387	644139		NM_001101387	ENSG00000233670	PIRT	-	phosphoinositide interacting regulator of transient receptor potential channels	protein-coding
193159	chr6	29652771	29652930	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-4242	NM_206814	4340		NM_002433	ENSG00000204655	MOG	BTN6|BTNL11|MOGIG2|NRCLP7	myelin oligodendrocyte glycoprotein	protein-coding
174114	chr4	36198971	36199130	+	0	NA	intron (NR_146894, intron 6 of 32)	MER52A|LTR|ERV1	44889	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
188402	chr5	153974321	153974880	+	0	NA	Intergenic	Intergenic	64310	NM_001317993	10827		NM_018691	ENSG00000055147	FAM114A2	133K02|C5orf3	family with sequence similarity 114 member A2	protein-coding
102232	chr17	75240251	75241150	+	0	NA	intron (NM_001172703, intron 11 of 16)	intron (NM_001172703, intron 11 of 16)	20906	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
128231	chr2	54329371	54329600	+	0	NA	Intergenic	MIR|SINE|MIR	-1399	NM_001369401	129852		NM_173486	ENSG00000177994	C2orf73	-	chromosome 2 open reading frame 73	protein-coding
50727	chr12	48973901	48974700	+	0	NA	Intergenic	Intergenic	-2565	NM_003394	7480		NM_003394	ENSG00000169884	WNT10B	SHFM6|STHAG8|WNT-12	Wnt family member 10B	protein-coding
177928	chr4	132124051	132124350	+	0	NA	Intergenic	LTR12F|LTR|ERV1	359362	NR_125884	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
64362	chr14	24116571	24116730	+	0	NA	intron (NR_028100, intron 1 of 13)	intron (NR_028100, intron 1 of 13)	1365	NM_181357	80344		NM_025230	ENSG00000100897	DCAF11	GL014|PRO2389|WDR23	DDB1 and CUL4 associated factor 11	protein-coding
98267	chr17	46190701	46190930	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	1967	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
17782	chr1	159188451	159188630	+	0	NA	intron (NM_001346510, intron 1 of 8)	CpG	13882	NR_037870	100131825		NR_037870		CADM3-AS1	-	CADM3 antisense RNA 1	ncRNA
162698	chr3	48985721	48986480	+	0	NA	non-coding (NR_146085, exon 16 of 16)	non-coding (NR_146085, exon 16 of 16)	-3808	NM_177938	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
129921	chr2	73294701	73295100	+	0	NA	Intergenic	Intergenic	-1352	NM_001965	1961		NM_001965	ENSG00000135625	EGR4	AT133|NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
48731	chr12	10711201	10711400	+	0	NA	intron (NM_003651, intron 5 of 9)	intron (NM_003651, intron 5 of 9)	12023	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
119723	chr19	41219321	41219580	+	0	NA	exon (NM_001699, exon 1 of 19)	exon (NM_001699, exon 1 of 19)	227	NM_021913	558		NM_001699	ENSG00000167601	AXL	ARK|AXL3|JTK11|Tyro7|UFO	AXL receptor tyrosine kinase	protein-coding
116520	chr19	18170001	18170200	+	0	NA	non-coding (NR_073517, exon 16 of 16)	non-coding (NR_073517, exon 16 of 16)	-3713	NM_006332	10437		NM_006332	ENSG00000216490	IFI30	GILT|IFI-30|IP-30|IP30	IFI30 lysosomal thiol reductase	protein-coding
206021	chr7	26375951	26376250	+	0	NA	non-coding (NR_136271, exon 1 of 2)	non-coding (NR_136271, exon 1 of 2)	169	NR_136271	105375304		NR_136270	ENSG00000225792	SNX10-AS1	-	SNX10 antisense RNA 1	ncRNA
103509	chr17	78432501	78432900	+	0	NA	intron (NM_173628, intron 75 of 80)	intron (NM_173628, intron 75 of 80)	-52210	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
233507	chr9	138238101	138238600	+	0	NA	intron (NR_146178, intron 5 of 14)	L2c|LINE|L2	21494	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
228307	chr9	98120321	98120630	+	0	NA	TTS (NM_003389)	TTS (NM_003389)	-1253	NM_033219	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
9208	chr1	45621271	45622800	+	0	NA	intron (NM_001114938, intron 7 of 12)	intron (NM_001114938, intron 7 of 12)	2019	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
109258	chr19	528071	528750	+	0	NA	Intergenic	AluSz|SINE|Alu	-3350	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
33732	chr10	122373701	122376250	+	0	NA	intron (NM_001377244, intron 1 of 13)	CpG	267	NM_001377257	59338		NM_021622	ENSG00000107679	PLEKHA1	TAPP1	pleckstrin homology domain containing A1	protein-coding
90244	chr17	754571	754730	+	0	NA	non-coding (NR_024120, exon 1 of 1)	non-coding (NR_024120, exon 1 of 1)	2317	NR_024120	100131454		NR_024120	ENSG00000293440	DBIL5P	ELP2P	diazepam binding inhibitor-like 5, pseudogene	pseudo
153093	chr22	23456771	23457130	+	0	NA	Intergenic	Intergenic	23386	NR_110538	101929374		NR_110538	ENSG00000234928	LINC01659	-	long intergenic non-protein coding RNA 1659	ncRNA
113013	chr19	7917401	7918380	+	0	NA	intron (NM_001195259, intron 4 of 5)	CpG-13580	-2448	NM_003083	6618		NM_003083	ENSG00000104976	SNAPC2	PTFDELTA|SNAP45	small nuclear RNA activating complex polypeptide 2	protein-coding
139771	chr2	230209501	230209700	+	0	NA	intron (NM_080424, intron 7 of 18)	L2|LINE|L2	10384	NM_001378443	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
51359	chr12	51780351	51780850	+	0	NA	intron (NM_001369788, intron 20 of 25)	(T)n|Simple_repeat|Simple_repeat	51317	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
55351	chr12	104108751	104109500	+	0	NA	Intergenic	Intergenic	29085	NM_006166	4801		NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	nuclear transcription factor Y subunit beta	protein-coding
61216	chr13	49539351	49539650	+	0	NA	TTS (NM_001352504)	TTS (NM_001352504)	42444	NM_001040444	51131		NM_001040443	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
161131	chr3	38479371	38480050	+	0	NA	exon (NM_001106, exon 7 of 11)	exon (NM_001106, exon 7 of 11)	-16562	NR_153328	9941		NM_005107	ENSG00000157036	EXOG	ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB	exo/endonuclease G	protein-coding
43367	chr11	76862951	76863250	+	0	NA	intron (NM_001300953, intron 1 of 9)	AluJr|SINE|Alu	2182	NM_001300955	55331		NM_018367	ENSG00000078124	ACER3	APHC|PHCA|PLDECO	alkaline ceramidase 3	protein-coding
532	chr1	1227971	1228400	+	0	NA	intron (NM_016547, intron 2 of 6)	intron (NM_016547, intron 2 of 6)	3816	NM_016176	51150		NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
127536	chr2	42326801	42327200	+	0	NA	intron (NM_019063, intron 21 of 22)	L1MB8|LINE|L1	33038	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
75699	chr15	67884501	67884990	+	0	NA	Intergenic	Intergenic	-44700	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
71691	chr15	20147821	20148430	+	0	NA	Intergenic	TAR1|Satellite|telo	-134619	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
36553	chr11	6617201	6617600	+	0	NA	exon (NM_000391, exon 5 of 13)	exon (NM_000391, exon 5 of 13)	2022	NM_000391	1200		NM_000391	ENSG00000166340	TPP1	CLN2|GIG1|LPIC|SCAR7|TPP-1	tripeptidyl peptidase 1	protein-coding
99011	chr17	48818151	48818250	+	0	NA	promoter-TSS (NM_001130918)	promoter-TSS (NM_001130918)	-971	NM_001130918	284076		NM_173623	ENSG00000170703	TTLL6	TTL.6	tubulin tyrosine ligase like 6	protein-coding
17991	chr1	160518171	160518330	+	0	NA	intron (NM_001184714, intron 1 of 7)	L1PA10|LINE|L1	5005	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
127811	chr2	44753471	44753830	+	0	NA	intron (NM_024766, intron 8 of 10)	LFSINE_Vert|SINE|tRNA	185238	NR_147194	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
179818	chr5	454001	454550	+	0	NA	intron (NM_007277, intron 4 of 12)	intron (NM_007277, intron 4 of 12)	11099	NM_007277	11336		NM_007277	ENSG00000180104	EXOC3	SEC6|SEC6L1|Sec6p	exocyst complex component 3	protein-coding
82	chr1	296971	297600	+	0	NA	Intergenic	Intergenic	-90688	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
111732	chr19	4354021	4354330	+	0	NA	intron (NM_032868, intron 5 of 11)	intron (NM_032868, intron 5 of 11)	10613	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
89139	chr16	88515101	88515700	+	0	NA	intron (NM_153813, intron 4 of 9)	MIRc|SINE|MIR	15653	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
89337	chr16	88751151	88751450	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	8533	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
92871	chr17	16414621	16416000	+	0	NA	promoter-TSS (NM_016113)	promoter-TSS (NM_016113)	-261	NM_016113	51393		NM_016113	ENSG00000187688	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel subfamily V member 2	protein-coding
77930	chr15	89321421	89322200	+	0	NA	exon (NM_001126131, exon 16 of 23)	exon (NM_001126131, exon 16 of 23)	5000	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
68688	chr14	90397601	90398980	+	0	NA	promoter-TSS (NM_001363670)	promoter-TSS (NM_001363670)	40	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
170706	chr3	187951701	187952100	+	0	NA	Intergenic	Intergenic	24507	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
192033	chr6	16470071	16470430	+	0	NA	intron (NM_000332, intron 7 of 8)	L1MB3|LINE|L1	231663	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
16817	chr1	155606271	155606830	+	0	NA	Intergenic	AluSx|SINE|Alu	-3620	NM_001350782	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
169595	chr3	170961671	170961900	+	0	NA	Intergenic	Intergenic	-53148	NM_020390	56648		NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
120866	chr19	45533101	45533500	+	0	NA	intron (NM_001017989, intron 1 of 1)	AluY|SINE|Alu	25821	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
190335	chr5	179631251	179631550	+	0	NA	intron (NM_001364226, intron 1 of 13)	AluJr|SINE|Alu	3384	NM_001364233	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
218854	chr8	60233201	60233580	+	0	NA	intron (NR_135821, intron 3 of 9)	intron (NR_135821, intron 3 of 9)	48010	NM_001321837	767		NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
202802	chr6	159149351	159149850	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-19800	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
228801	chr9	111896381	111898180	+	0	NA	exon (NM_003358, exon 1 of 9)	exon (NM_003358, exon 1 of 9)	466	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
11630	chr1	91743121	91743580	+	0	NA	intron (NR_036634, intron 5 of 17)	intron (NR_036634, intron 5 of 17)	142801	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
212985	chr7	130984851	130985500	+	0	NA	intron (NR_109855, intron 2 of 4)	AluJr|SINE|Alu	71711	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
24063	chr1	235310521	235311300	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJb|SINE|Alu	-16306	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
127317	chr2	38863321	38863580	+	0	NA	exon (NM_198963, exon 3 of 24)	exon (NM_198963, exon 3 of 24)	12484	NM_198963	90957		NM_144995	ENSG00000163214	DHX57	DDX57	DExH-box helicase 57	protein-coding
151073	chr21	44800751	44802880	+	0	NA	promoter-TSS (NM_001202489)	promoter-TSS (NM_001202489)	5	NM_182688	7327		NM_003343	ENSG00000184787	UBE2G2	UBC7	ubiquitin conjugating enzyme E2 G2	protein-coding
155156	chr22	37674621	37675690	+	0	NA	promoter-TSS (NM_002305)	promoter-TSS (NM_002305)	-481	NM_002305	3956		NM_002305	ENSG00000100097	LGALS1	GAL1|GBP	galectin 1	protein-coding
39794	chr11	61957871	61958550	+	0	NA	exon (NM_004183, exon 7 of 11)	exon (NM_004183, exon 7 of 11)	2975	NM_001363591	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
92178	chr17	7715801	7716000	+	0	NA	Intergenic	Intergenic	-1844	NM_020877	146754		NM_020877	ENSG00000183914	DNAH2	DNAHC2|DNHD3|SPGF45	dynein axonemal heavy chain 2	protein-coding
5763	chr1	26485221	26486130	+	0	NA	Intergenic	AluY|SINE|Alu	13235	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
223449	chr8	143979901	143980380	+	0	NA	intron (NR_134234, intron 9 of 10)	AluY|SINE|Alu	-3395	NM_000445	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
164806	chr3	70550671	70551030	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-238212	NM_001364677	107986096		NM_001364676	ENSG00000242120	MDFIC2	-	MyoD family inhibitor domain containing 2	protein-coding
43169	chr11	75351351	75353150	+	0	NA	promoter-TSS (NM_004041)	promoter-TSS (NM_004041)	-589	NM_020251	408		NM_004041	ENSG00000137486	ARRB1	ARB1|ARR1	arrestin beta 1	protein-coding
51157	chr12	50165301	50165500	+	0	NA	intron (NM_001281731, intron 1 of 10)	AluY|SINE|Alu	1969	NM_001331070	91012		NM_147190	ENSG00000139624	CERS5	LASS5|Trh4	ceramide synthase 5	protein-coding
159048	chr3	11561471	11561630	+	0	NA	intron (NM_001284391, intron 3 of 4)	intron (NM_001284391, intron 3 of 4)	7248	NM_001128221	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
62937	chr13	111222751	111222850	+	0	NA	intron (NM_001354053, intron 3 of 18)	intron (NM_001354053, intron 3 of 18)	-18374	NM_001354061	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
33474	chr10	119071721	119072080	+	0	NA	intron (NM_003750, intron 4 of 21)	AluY|SINE|Alu	8917	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
135402	chr2	160766951	160767050	+	0	NA	Intergenic	L1PA4|LINE|L1	-273193	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
122736	chr19	50052121	50052530	+	0	NA	intron (NR_138096, intron 1 of 4)	intron (NR_138096, intron 1 of 4)	1736	NR_138096	400710		NR_027257	ENSG00000204666	ZNF473CR	-	ZNF473 cis regulating lncRNA	ncRNA
219676	chr8	80512201	80512600	+	0	NA	intron (NM_023929, intron 2 of 6)	L2|LINE|L2	26174	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
62455	chr13	99353851	99354900	+	0	NA	intron (NR_026644, intron 7 of 8)	intron (NR_026644, intron 7 of 8)	-1756	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
195368	chr6	36683621	36683880	+	0	NA	intron (NM_001220778, intron 1 of 2)	intron (NM_001220778, intron 1 of 2)	5036	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
119170	chr19	39408401	39410800	+	0	NA	promoter-TSS (NR_039755)	promoter-TSS (NR_039755)	78	NR_039755	100616163		NR_039755	ENSG00000266559	MIR4530	-	microRNA 4530	ncRNA
171504	chr3	196629301	196630280	+	0	NA	Intergenic	AluSx|SINE|Alu	2797	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
210548	chr7	100323371	100323730	+	0	NA	intron (NR_003613, intron 6 of 6)	FRAM|SINE|Alu	-12515	NR_036569	101752399		NR_036569	ENSG00000272752	STAG3L5P-PVRIG2P-PILRB	FDFACT|LOC101735302-LOC101752334-PILRB|PILRB	STAG3L5P-PVRIG2P-PILRB readthrough	ncRNA
78366	chr15	91426351	91426780	+	0	NA	Intergenic	Intergenic	-36774	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
20963	chr1	202343671	202344280	+	0	NA	Intergenic	Intergenic	-2009	NM_001310326	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
13743	chr1	116881721	116882050	+	0	NA	Intergenic	MER96|DNA|hAT-Tip100	-28031	NM_020440	5738		NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
12127	chr1	100063501	100063700	+	0	NA	intron (NM_033055, intron 5 of 11)	AluJb|SINE|Alu	25505	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
215428	chr7	157682601	157683000	+	0	NA	exon (NM_001308267, exon 12 of 22)	exon (NM_001308267, exon 12 of 22)	-108378	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
21578	chr1	206475521	206475780	+	0	NA	TTS (NR_106919)	TTS (NR_106919)	847	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
125799	chr2	23988301	23988630	+	0	NA	intron (NM_181713, intron 6 of 6)	L1MC4|LINE|L1	-21620	NM_001346880	388931		NM_001080473	ENSG00000205639	MFSD2B	SLC59A2	MFSD2 lysolipid transporter B, sphingolipid	protein-coding
221468	chr8	124471271	124471950	+	0	NA	intron (NR_108047, intron 1 of 1)	intron (NR_108047, intron 1 of 1)	2744	NR_108048	101927612		NR_108047	ENSG00000245149	RNF139-DT	RNF139-AS1	RNF139 divergent transcript	ncRNA
228665	chr9	107288501	107289500	+	0	NA	intron (NM_001244713, intron 1 of 9)	intron (NM_001244713, intron 1 of 9)	4231	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
203035	chr6	164039921	164040300	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	-368626	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
63249	chr13	113942251	113942350	+	0	NA	Intergenic	L1MC4a|LINE|L1	-13309	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
16034	chr1	152220921	152221500	+	0	NA	exon (NM_001009931, exon 3 of 3)	exon (NM_001009931, exon 3 of 3)	2983	NM_001009931	388697		NM_001009931	ENSG00000197915	HRNR	FLG3|S100A16|S100a18	hornerin	protein-coding
99640	chr17	50622801	50623000	+	0	NA	intron (NM_198377, intron 34 of 36)	intron (NM_198377, intron 34 of 36)	-11981	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
47693	chr12	6383701	6384750	+	0	NA	promoter-TSS (NM_002342)	promoter-TSS (NM_002342)	63	NM_002342	4055		NM_002342	ENSG00000111321	LTBR	D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	lymphotoxin beta receptor	protein-coding
195396	chr6	36769451	36770430	+	0	NA	intron (NM_001376889, intron 11 of 21)	intron (NM_001376889, intron 11 of 21)	-4145	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
117250	chr19	19441501	19441700	+	0	NA	intron (NM_001384516, intron 2 of 12)	AluY|SINE|Alu	6537	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
188620	chr5	157205871	157206480	+	0	NA	intron (NM_005546, intron 1 of 16)	AluJb|SINE|Alu	25335	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
45231	chr11	117951101	117951960	+	0	NA	Intergenic	Intergenic	-22077	NM_001206790	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
41239	chr11	65780701	65781980	+	0	NA	promoter-TSS (NM_138368)	promoter-TSS (NM_138368)	-364	NM_138368	91056		NM_138368	ENSG00000254470	AP5B1	AP-5|PP1030	adaptor related protein complex 5 subunit beta 1	protein-coding
110082	chr19	1512821	1513500	+	0	NA	promoter-TSS (NM_213604)	promoter-TSS (NM_213604)	-141	NM_213604	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
95767	chr17	38669771	38670130	+	0	NA	Intergenic	Intergenic	5007	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
107062	chr18	32714521	32714800	+	0	NA	intron (NM_020805, intron 3 of 8)	intron (NM_020805, intron 3 of 8)	58363	NM_020805	57565		NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding
1351	chr1	2494871	2495030	+	0	NA	intron (NM_001303013, intron 12 of 21)	intron (NM_001303013, intron 12 of 21)	18635	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
123424	chr19	54100621	54101200	+	0	NA	5' UTR (NM_133168, exon 2 of 5).2	5' UTR (NM_133168, exon 2 of 5).2	1776	NM_001282350	126014		NM_130771	ENSG00000170909	OSCAR	PIGR3|PIgR-3	osteoclast associated Ig-like receptor	protein-coding
89906	chr16	89698071	89698830	+	0	NA	intron (NM_152339, intron 2 of 2)	intron (NM_152339, intron 2 of 2)	3255	NM_152339	124044		NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
194510	chr6	33288421	33290380	+	0	NA	promoter-TSS (NM_001265595).2	promoter-TSS (NM_001265595).2	-161	NM_001164267	9277		NM_005452	ENSG00000227057	WDR46	BING4|C6orf11|FP221|UTP7	WD repeat domain 46	protein-coding
41988	chr11	67382351	67383630	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-8813	NM_001166212	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
221496	chr8	124541721	124542180	+	0	NA	intron (NM_001278645, intron 1 of 3)	AluSq10|SINE|Alu	2827	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
22014	chr1	209884671	209884950	+	0	NA	Intergenic	Intergenic	-53364	NM_001256006	255928		NM_153262	ENSG00000143469	SYT14	SCAR11|sytXIV	synaptotagmin 14	protein-coding
73772	chr15	45610321	45610980	+	0	NA	TTS (NM_012388)	TTS (NM_012388)	-20498	NM_001271213	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
197686	chr6	85631071	85631480	+	0	NA	intron (NM_001253771, intron 5 of 10)	AluSz6|SINE|Alu	10176	NM_001159675	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
428	chr1	1090651	1090950	+	0	NA	intron (NM_017891, intron 3 of 9)	intron (NM_017891, intron 3 of 9)	-16494	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
79492	chr16	778401	779280	+	0	NA	Intergenic	Intergenic	8657	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
165622	chr3	101694751	101695050	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-8182	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
9626	chr1	52419101	52419700	+	0	NA	3' UTR (NM_032864, exon 10 of 10)	3' UTR (NM_032864, exon 10 of 10)	14798	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
122113	chr19	48798471	48798830	+	0	NA	intron (NM_001190, intron 6 of 10)	AluY|SINE|Alu	12379	NM_001284325	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
60863	chr13	45807551	45807650	+	0	NA	intron (NM_198849, intron 1 of 1)	intron (NM_198849, intron 1 of 1)	44153	NM_198849	283514		NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
62306	chr13	99015721	99016580	+	0	NA	promoter-TSS (NM_001366678)	promoter-TSS (NM_001366678)	-365	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
227287	chr9	89391471	89391830	+	0	NA	intron (NM_001371200, intron 10 of 20)	intron (NM_001371200, intron 10 of 20)	72799	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
194767	chr6	34071121	34071800	+	0	NA	intron (NM_001282847, intron 2 of 9)	(CA)n|Simple_repeat|Simple_repeat	34507	NM_001256813	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
232162	chr9	134134271	134134430	+	0	NA	promoter-TSS (NM_001384414)	promoter-TSS (NM_001384414)	-849	NM_001384414	11091		NM_017588	ENSG00000196363	WDR5	BIG-3|BIG3|CFAP89|SWD3	WD repeat domain 5	protein-coding
136823	chr2	182652251	182652750	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-63757	NR_073366	54431		NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
72797	chr15	40048401	40049250	+	0	NA	intron (NR_040060, intron 2 of 2)	intron (NR_040060, intron 2 of 2)	9514	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
192339	chr6	24283051	24283400	+	0	NA	intron (NM_001195610, intron 7 of 10)	intron (NM_001195610, intron 7 of 10)	-73678	NM_181337	353219		NM_181337	ENSG00000146049	KAAG1	RU2AS	kidney associated DCDC2 antisense RNA 1	ncRNA
208056	chr7	56066021	56066800	+	0	NA	intron (NM_001146333, intron 1 of 7)	MIR3|SINE|MIR	2124	NM_001366649	25870		NM_015411	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
116871	chr19	18652321	18652830	+	0	NA	intron (NM_001345983, intron 1 of 2)	AluSx1|SINE|Alu	7937	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
204916	chr7	6161801	6162000	+	0	NA	TTS (NM_032172)	TTS (NM_032172)	10237	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
221837	chr8	128222001	128222430	+	0	NA	Intergenic	Intergenic	72099	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
22837	chr1	225441601	225442350	+	0	NA	Intergenic	Intergenic	-13120	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
23357	chr1	228150701	228150900	+	0	NA	intron (NM_020435, intron 1 of 1)	intron (NM_020435, intron 1 of 1)	870	NM_020435	57165		NM_020435	ENSG00000198835	GJC2	CX46.6|Cx47|GJA12|HLD2|LMPH1C|LMPHM3|PMLDAR|SPG44	gap junction protein gamma 2	protein-coding
210989	chr7	102235251	102235350	+	0	NA	intron (NM_181552, intron 22 of 23)	intron (NM_181552, intron 22 of 23)	-49841	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
120898	chr19	45593301	45593500	+	0	NA	intron (NM_005282, intron 1 of 1)	AluSq4|SINE|Alu	-8598	NM_001017989	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
67765	chr14	73726501	73726900	+	0	NA	exon (NM_194278, exon 7 of 12)	exon (NM_194278, exon 7 of 12)	-12316	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
143958	chr20	32826201	32826500	+	0	NA	intron (NM_012325, intron 2 of 6)	AluY|SINE|Alu	6396	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
135174	chr2	157878851	157879350	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-2770	NM_001111067	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
127084	chr2	37585701	37587030	+	0	NA	Intergenic	Intergenic	85277	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
137967	chr2	201185851	201186500	+	0	NA	intron (NM_001230, intron 2 of 7)	intron (NM_001230, intron 2 of 7)	3034	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
14385	chr1	144179021	144179300	+	0	NA	Intergenic	CpG	69045	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
12099	chr1	100027221	100027650	+	0	NA	3' UTR (NM_012243, exon 8 of 8)	3' UTR (NM_012243, exon 8 of 8)	-10660	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
175947	chr4	80688121	80688250	+	0	NA	intron (NM_001206997, intron 4 of 6)	L1PA3|LINE|L1	-342523	NM_001201	651		NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
10651	chr1	70352001	70352430	+	0	NA	intron (NM_030816, intron 1 of 12)	AluYm1|SINE|Alu	2507	NM_030816	81573		NM_030816	ENSG00000118454	ANKRD13C	dJ677H15.3	ankyrin repeat domain 13C	protein-coding
164587	chr3	66183001	66183600	+	0	NA	intron (NM_173471, intron 1 of 10)	intron (NM_173471, intron 1 of 10)	-37442	NM_001350993	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
207969	chr7	55279671	55280480	+	0	NA	Intergenic	Intergenic	-24440	NR_110426	102725541		NR_110426		ELDR	Fabl|LINC01156	EGFR long non-coding downstream RNA	ncRNA
44786	chr11	112880551	112880650	+	0	NA	Intergenic	Intergenic	-80820	NM_001076682	4684		NM_000615	ENSG00000149294	NCAM1	CD56|MSK39|NCAM	neural cell adhesion molecule 1	protein-coding
24609	chr1	246506621	246507900	+	0	NA	promoter-TSS (NM_001375962)	promoter-TSS (NM_001375962)	19	NM_001375962	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
162912	chr3	49410201	49410890	+	0	NA	intron (NM_001313941, intron 1 of 5)	intron (NM_001313941, intron 1 of 5)	1431	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
48120	chr12	7876671	7876830	+	0	NA	intron (NM_001286237, intron 1 of 9)	intron (NM_001286237, intron 1 of 9)	-3835	NM_001286234	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
162283	chr3	47382771	47383400	+	0	NA	intron (NM_001304482, intron 1 of 23)	intron (NM_001304482, intron 1 of 23)	2064	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
85534	chr16	53068301	53068980	+	0	NA	intron (NR_168111, intron 2 of 4)	intron (NR_168111, intron 2 of 4)	13649	NR_168120	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
171165	chr3	195634531	195636150	+	0	NA	Intergenic	CpG	16819	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
67790	chr14	73758101	73759600	+	0	NA	TTS (NR_039727)	TTS (NR_039727)	103	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
143608	chr20	31715671	31716080	+	0	NA	intron (NR_134257, intron 1 of 2)	AluJb|SINE|Alu	-5632	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
151379	chr21	45893971	45894130	+	0	NA	intron (NM_001382276, intron 6 of 18)	intron (NM_001382276, intron 6 of 18)	45900	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
81553	chr16	9117421	9118180	+	0	NA	3' UTR (NM_014117, exon 4 of 4)	3' UTR (NM_014117, exon 4 of 4)	26156	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
218217	chr8	42028601	42029480	+	0	NA	intron (NM_001305878, intron 2 of 13)	L1MA4A|LINE|L1	-22710	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
29928	chr10	73364601	73364800	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-5836	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
98494	chr17	47301071	47301430	+	0	NA	intron (NM_000212, intron 12 of 14)	intron (NM_000212, intron 12 of 14)	22363	NR_110881	102724508		NR_110880	ENSG00000263293	EFCAB13-DT	THCAT158	EFCAB13 divergent transcript	ncRNA
3097	chr1	12203001	12203530	+	0	NA	intron (NM_001066, intron 9 of 9)	MIRb|SINE|MIR	11552	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
160855	chr3	33116301	33116500	+	0	NA	intron (NM_006371, intron 1 of 6)	AluSz|SINE|Alu	2386	NM_006371	10491		NM_006371	ENSG00000170275	CRTAP	CASP|LEPREL3|OI7|P3H5	cartilage associated protein	protein-coding
132617	chr2	108612251	108613030	+	0	NA	intron (NM_001193482, intron 1 of 9)	intron (NM_001193482, intron 1 of 9)	5493	NM_001193482	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
121250	chr19	46673571	46673930	+	0	NA	TTS (NM_016457)	TTS (NM_016457)	12272	NR_040041	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
202619	chr6	158741301	158741700	+	0	NA	intron (NM_001318745, intron 8 of 14)	HSMAR1|DNA|TcMar-Mariner	23253	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
191157	chr6	4781451	4781750	+	0	NA	intron (NM_001368127, intron 1 of 5)	intron (NM_001368127, intron 1 of 5)	5196	NM_001368126	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
9020	chr1	44737721	44738580	+	0	NA	Intergenic	SVA_B|Retroposon|SVA	-1687	NM_001297655	11004		NM_006845	ENSG00000142945	KIF2C	CT139|KNSL6|MCAK	kinesin family member 2C	protein-coding
146535	chr20	49948201	49948400	+	0	NA	intron (NM_018683, intron 4 of 5)	intron (NM_018683, intron 4 of 5)	11903	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
105022	chr17	82047521	82047950	+	0	NA	TTS (NM_002917)	TTS (NM_002917)	4076	NM_002917	5986		NM_002917	ENSG00000169733	RFNG	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
66803	chr14	64723971	64724730	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	19926	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
114703	chr19	13146951	13147250	+	0	NA	intron (NM_003765, intron 4 of 7)	(AC)n|Simple_repeat|Simple_repeat	3275	NM_003765	8677		NM_003765	ENSG00000104915	STX10	SYN10|hsyn10	syntaxin 10	protein-coding
63587	chr14	20475051	20475150	+	0	NA	exon (NM_000270, exon 5 of 6)	exon (NM_000270, exon 5 of 6)	5694	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
125777	chr2	23685501	23685900	+	0	NA	intron (NM_052920, intron 6 of 13)	intron (NM_052920, intron 6 of 13)	241423	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
57467	chr12	122021201	122024430	+	0	NA	intron (NM_020993, intron 1 of 5)	CpG	931	NM_001024808	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
77615	chr15	85382301	85382900	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	1997	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
87027	chr16	68269101	68270280	+	0	NA	intron (NM_003983, intron 2 of 10)	AluSx3|SINE|Alu	5164	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
174755	chr4	47032501	47032950	+	0	NA	intron (NM_000812, intron 3 of 8)	CpG-21171	1158	NM_000812	2560		NM_000812	ENSG00000163288	GABRB1	DEE45|EIEE45	gamma-aminobutyric acid type A receptor subunit beta1	protein-coding
211287	chr7	103148451	103149750	+	0	NA	promoter-TSS (NM_001122838)	promoter-TSS (NM_001122838)	-1	NM_198990	222236		NM_198990	ENSG00000161048	NAPEPLD	C7orf18|FMP30|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding
167662	chr3	129891701	129892100	+	0	NA	intron (NM_001349271, intron 1 of 4)	intron (NM_001349271, intron 1 of 4)	1676	NM_001128224	23023		NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
173235	chr4	6924521	6924780	+	0	NA	intron (NM_020773, intron 2 of 13)	intron (NM_020773, intron 2 of 13)	14824	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
43877	chr11	88337201	88338100	+	0	NA	promoter-TSS (NM_001114173)	promoter-TSS (NM_001114173)	86	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
83009	chr16	22204421	22205100	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-1518	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
73576	chr15	44468921	44469230	+	0	NA	intron (NM_016396, intron 2 of 12)	MER44B|DNA|TcMar-Tigger	41446	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
77774	chr15	85854051	85854600	+	0	NA	Intergenic	Intergenic	28690	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
217496	chr8	29054021	29054880	+	0	NA	Intergenic	Intergenic	163136	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
11915	chr1	93358351	93358450	+	0	NA	intron (NM_001938, intron 2 of 2)	LTR50|LTR|ERVL	12493	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
44318	chr11	102390451	102391550	+	0	NA	Intergenic	Intergenic	43626	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
114604	chr19	12956301	12957980	+	0	NA	promoter-TSS (NM_052850)	promoter-TSS (NM_052850)	83	NM_052850	90480		NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1|mL64	GADD45G interacting protein 1	protein-coding
124651	chr2	2646471	2647300	+	0	NA	Intergenic	Intergenic	-315610	NM_001303052	23040		NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding
217837	chr8	37699351	37699680	+	0	NA	3' UTR (NM_025069, exon 2 of 2)	3' UTR (NM_025069, exon 2 of 2)	3733	NM_025069	80139		NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
205929	chr7	25891671	25892050	+	0	NA	Intergenic	Intergenic	58126	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
135927	chr2	171864471	171864630	+	0	NA	intron (NM_003705, intron 3 of 17)	intron (NM_003705, intron 3 of 17)	29694	NM_003705	8604		NM_003705	ENSG00000115840	SLC25A12	AGC1|ARALAR|DEE39|EIEE39	solute carrier family 25 member 12	protein-coding
185152	chr5	119325451	119325850	+	0	NA	intron (NM_001286815, intron 2 of 2)	AluY|SINE|Alu	-7525	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
111084	chr19	3179701	3181580	+	0	NA	TTS (NM_003775)	TTS (NM_003775)	1871	NM_003775	8698		NM_003775	ENSG00000125910	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
3407	chr1	15757971	15758130	+	0	NA	promoter-TSS (NM_017556)	promoter-TSS (NM_017556)	-745	NM_017556	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
794	chr1	1543401	1544130	+	0	NA	intron (NM_014188, intron 4 of 4)	intron (NM_014188, intron 4 of 4)	-3141	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
176843	chr4	102584821	102585080	+	0	NA	intron (NM_001382625, intron 12 of 24)	AluJr|SINE|Alu	-82464	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
42892	chr11	73365371	73365530	+	0	NA	exon (NM_014786, exon 19 of 21)	exon (NM_014786, exon 19 of 21)	-10949	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
64872	chr14	35314971	35315350	+	0	NA	intron (NR_104110, intron 5 of 5)	intron (NR_104110, intron 5 of 5)	22778	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
42923	chr11	73396421	73396900	+	0	NA	3' UTR (NM_032871, exon 11 of 11)	3' UTR (NM_032871, exon 11 of 11)	19992	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
160961	chr3	36989601	36989950	+	0	NA	3' UTR (NM_014805, exon 1 of 1)	3' UTR (NM_014805, exon 1 of 1)	3356	NM_014805	9852		NM_014805	ENSG00000178567	EPM2AIP1	-	EPM2A interacting protein 1	protein-coding
15330	chr1	149900901	149901100	+	0	NA	TTS (NM_001321026)	TTS (NM_001321026)	1432	NM_001321026	51027		NM_016074	ENSG00000178096	BOLA1	CGI-143	bolA family member 1	protein-coding
71197	chr14	105064111	105064500	+	0	NA	intron (NM_001278694, intron 1 of 4)	intron (NM_001278694, intron 1 of 4)	1125	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
25567	chr10	7678951	7679050	+	0	NA	Intergenic	L1MD2|LINE|L1	-12002	NM_001001851	80760		NM_030569	ENSG00000123243	ITIH5	ITI-HC5|PP14776	inter-alpha-trypsin inhibitor heavy chain 5	protein-coding
234060	chrX	7132601	7133030	+	0	NA	intron (NM_001135565, intron 1 of 4)	intron (NM_001135565, intron 1 of 4)	-14475	NM_001320750	412		NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase	protein-coding
124901	chr2	8474651	8474750	+	0	NA	Intergenic	AluSz|SINE|Alu	109092	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
118014	chr19	34175271	34175430	+	0	NA	intron (NM_001384434, intron 1 of 9).2	AluSz|SINE|Alu	2846	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
158094	chr22	49997701	49998830	+	0	NA	exon (NM_001001694, exon 10 of 15)	exon (NM_001001694, exon 10 of 15)	14500	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
114954	chr19	13991051	13991350	+	0	NA	intron (NM_002918, intron 2 of 20)	L2a|LINE|L2	15120	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
195841	chr6	41415921	41416500	+	0	NA	Intergenic	Intergenic	80602	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
202787	chr6	159098371	159099750	+	0	NA	Intergenic	Intergenic	-53908	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
132789	chr2	110115821	110116280	+	0	NA	promoter-TSS (NM_005434)	promoter-TSS (NM_005434)	-228	NM_005434	7851		NM_005434	ENSG00000144063	MALL	BENE	mal, T cell differentiation protein like	protein-coding
101507	chr17	67719251	67719350	+	0	NA	intron (NM_001303272, intron 1 of 16)	AluSz|SINE|Alu	1364	NM_015462	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
62548	chr13	99656801	99657400	+	0	NA	intron (NM_206808, intron 1 of 8)	intron (NM_206808, intron 1 of 8)	14041	NR_036191	100422861		NR_036191	ENSG00000263615	MIR4306	mir-4306	microRNA 4306	ncRNA
231509	chr9	131406071	131406720	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	12309	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
168150	chr3	139113071	139113430	+	0	NA	intron (NR_026783, intron 2 of 2)	intron (NR_026783, intron 2 of 2)	9065	NR_026783	60467		NM_021812	ENSG00000232416	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis candidate 1	ncRNA
44582	chr11	108247051	108247550	+	0	NA	intron (NM_000051, intron 8 of 62)	intron (NM_000051, intron 8 of 62)	23771	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
82864	chr16	21527871	21528230	+	0	NA	Intergenic	Intergenic	-7606	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
230111	chr9	127613001	127613900	+	0	NA	intron (NM_001374306, intron 1 of 18)	CpG	1173	NM_001374308	6812		NM_003165	ENSG00000136854	STXBP1	DEE4|MUNC18-1|N-Sec1|NSEC1|P67|RBSEC1|UNC18|unc-18A|unc18-1	syntaxin binding protein 1	protein-coding
2698	chr1	10638201	10639550	+	0	NA	3' UTR (NM_001079843, exon 21 of 21)	3' UTR (NM_001079843, exon 21 of 21)	157771	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
36082	chr11	2995171	2995530	+	0	NA	Intergenic	Intergenic	-3021	NM_001369375	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
101886	chr17	74351801	74352400	+	0	NA	exon (NM_153209, exon 13 of 20)	exon (NM_153209, exon 13 of 20)	9768	NM_001080466	388419		NM_001080466	ENSG00000204347	BTBD17	BTBD17A|LGALS3BPL|TANGO10A	BTB domain containing 17	protein-coding
170502	chr3	186235571	186235730	+	0	NA	intron (NM_001346, intron 20 of 24)	intron (NM_001346, intron 20 of 24)	-126561	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
178256	chr4	143537651	143537950	+	0	NA	intron (NM_003601, intron 11 of 23)	AluSx|SINE|Alu	-21672	NR_003675	441046		NM_001011539	ENSG00000251600	GUSBP5	GYPELOC441046	GUSB pseudogene 5	pseudo
90283	chr17	1008521	1008780	+	0	NA	intron (NM_001282149, intron 16 of 17).3	intron (NM_001282149, intron 16 of 17).3	11521	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
205194	chr7	7696571	7696730	+	0	NA	intron (NM_002947, intron 2 of 7)	L4_A_Mam|LINE|RTE-X	21957	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
153871	chr22	30257271	30257430	+	0	NA	Intergenic	Intergenic	8890	NM_001319108	5008		NM_020530	ENSG00000099985	OSM	-	oncostatin M	protein-coding
10359	chr1	64939971	64940380	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	26374	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
19931	chr1	184506551	184506650	+	0	NA	intron (NM_030806, intron 2 of 5)	intron (NM_030806, intron 2 of 5)	119571	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
6688	chr1	29165071	29165630	+	0	NA	intron (NM_005626, intron 1 of 5)	intron (NM_005626, intron 1 of 5)	16550	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
87199	chr16	69428971	69429630	+	0	NA	intron (NM_030579, intron 1 of 4)	LTR12B|LTR|ERV1	4681	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
118387	chr19	35730321	35730800	+	0	NA	exon (NM_014727, exon 25 of 37)	exon (NM_014727, exon 25 of 37)	11892	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
143345	chr20	25855521	25855780	+	0	NA	Intergenic	Intergenic	-1629	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
233550	chrX	259251	260180	+	0	NA	Intergenic	Intergenic	-16641	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228350	chr9	99026801	99027200	+	0	NA	intron (NM_001855, intron 16 of 41)	intron (NM_001855, intron 16 of 41)	-78113	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
37472	chr11	18332221	18333600	+	0	NA	intron (NM_001142307, intron 2 of 15)	intron (NM_001142307, intron 2 of 15)	10343	NM_005316	2965		NM_005316	ENSG00000110768	GTF2H1	BTF2|P62|TFB1|TFIIH	general transcription factor IIH subunit 1	protein-coding
24301	chr1	236603901	236605130	+	0	NA	promoter-TSS (NM_018072)	promoter-TSS (NM_018072)	1	NM_018072	55127		NM_018072	ENSG00000119285	HEATR1	BAP28|UTP10	HEAT repeat containing 1	protein-coding
108816	chr18	78654321	78654580	+	0	NA	Intergenic	Intergenic	-325825	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
143870	chr20	32552971	32553530	+	0	NA	intron (NM_001256798, intron 1 of 10)	L2a|LINE|L2	32083	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
124378	chr19	58383221	58383950	+	0	NA	Intergenic	Intergenic	-2555	NM_138466	116412		NM_138466	ENSG00000152475	ZNF837	-	zinc finger protein 837	protein-coding
29364	chr10	69639251	69639850	+	0	NA	Intergenic	Intergenic	9303	NM_145306	219738		NM_145306	ENSG00000171224	FAM241B	C10orf35	family with sequence similarity 241 member B	protein-coding
65404	chr14	50813171	50813800	+	0	NA	intron (NM_020921, intron 3 of 30)	intron (NM_020921, intron 3 of 30)	-8312	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
130785	chr2	86849971	86850130	+	0	NA	intron (NM_172213, intron 3 of 5)	intron (NM_172213, intron 3 of 5)	-11775	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
24972	chr10	3060321	3060850	+	0	NA	intron (NR_160681, intron 1 of 3)	intron (NR_160681, intron 1 of 3)	6348	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
151397	chr21	45983701	45983900	+	0	NA	intron (NM_001848, intron 2 of 34)	MIR|SINE|MIR	2030	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
111317	chr19	3618371	3619030	+	0	NA	intron (NM_021231, intron 6 of 10)	intron (NM_021231, intron 6 of 10)	8090	NM_001080543	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
4657	chr1	22254151	22254250	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-12039	NR_039613	100616433		NR_039613	ENSG00000266564	MIR4418	-	microRNA 4418	ncRNA
189169	chr5	171401021	171401730	+	0	NA	intron (NM_002520, intron 8 of 10)	intron (NM_002520, intron 8 of 10)	13526	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
91778	chr17	7004781	7006250	+	0	NA	intron (NM_000697, intron 9 of 13)	AluSx1|SINE|Alu	6819	NR_040089	100506713		NR_040089	ENSG00000215067	ALOX12-AS1	-	ALOX12 antisense RNA 1	ncRNA
218030	chr8	38769301	38770950	+	0	NA	intron (NM_001352804, intron 1 of 10)	intron (NM_001352804, intron 1 of 10)	12850	NM_001352790	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
108531	chr18	74389121	74389580	+	0	NA	Intergenic	Intergenic	-20098	NR_131977	101927606		NR_131977	ENSG00000259779	LINC01922	-	long intergenic non-protein coding RNA 1922	ncRNA
52757	chr12	56659251	56659550	+	0	NA	Intergenic	AluSp|SINE|Alu	-13416	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
122532	chr19	49631101	49631700	+	0	NA	Intergenic	Intergenic	8743	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
90076	chr16	90012901	90013700	+	0	NA	intron (NM_001288708, intron 1 of 4)	MIR|SINE|MIR	-3179	NM_024043	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
123209	chr19	52734201	52735600	+	0	NA	intron (NM_001161499, intron 1 of 5)	CpG	144	NM_001161499	81856		NM_030972	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
38836	chr11	47318371	47319230	+	0	NA	intron (NR_164842, intron 29 of 33)	AluSz|SINE|Alu	33902	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
59452	chr13	25954021	25954350	+	0	NA	intron (NM_016529, intron 33 of 36)	L1PA7|LINE|L1	97831	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
162859	chr3	49352671	49353200	+	0	NA	Intergenic	Intergenic	5418	NM_001329502	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
84813	chr16	31076971	31077530	+	0	NA	exon (NM_014699, exon 2 of 3)	exon (NM_014699, exon 2 of 3)	2828	NM_014699	9726		NM_014699	ENSG00000167395	ZNF646	-	zinc finger protein 646	protein-coding
69121	chr14	92527671	92528600	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	14354	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
83663	chr16	28351651	28352200	+	0	NA	intron (NM_001282524, intron 2 of 6)	intron (NM_001282524, intron 2 of 6)	10935	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
186184	chr5	134210751	134211530	+	0	NA	intron (NM_002715, intron 1 of 6)	AluJb|SINE|Alu	14414	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
197328	chr6	73326421	73327030	+	0	NA	Intergenic	Intergenic	-16360	NR_027005	387097		NR_027005		C6orf147	-	chromosome 6 open reading frame 147	ncRNA
235242	chrX	41449601	41449800	+	0	NA	intron (NM_001378477, intron 2 of 2)	intron (NM_001378477, intron 2 of 2)	2240	NM_022567	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
200615	chr6	136767471	136768050	+	0	NA	intron (NM_005923, intron 1 of 29)	L1MB7|LINE|L1	-16287	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
129558	chr2	69893401	69894700	+	0	NA	promoter-TSS (NR_037862)	promoter-TSS (NR_037862)	94	NM_006857	11017		NM_006857	ENSG00000124380	SNRNP27	27K|RY1	small nuclear ribonucleoprotein U4/U6.U5 subunit 27	protein-coding
177551	chr4	119139151	119140080	+	0	NA	intron (NM_016599, intron 2 of 5)	intron (NM_016599, intron 2 of 5)	3783	NM_016599	51778		NM_016599	ENSG00000172399	MYOZ2	C4orf5|CMH16|CS-1|FATZ-2	myozenin 2	protein-coding
58861	chr12	133129751	133131200	+	0	NA	promoter-TSS (NM_001277291)	promoter-TSS (NM_001277291)	-2	NM_001277291	101060200		NM_001277291	ENSG00000214029	ZNF891	-	zinc finger protein 891	protein-coding
71029	chr14	104775601	104776630	+	0	NA	intron (NM_001382433, intron 6 of 15)	intron (NM_001382433, intron 6 of 15)	17486	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
75021	chr15	64067501	64068400	+	0	NA	Intergenic	AluJo|SINE|Alu	-21465	NM_001384998	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
105944	chr18	3605891	3606730	+	0	NA	intron (NR_119377, intron 1 of 2)	intron (NR_119377, intron 1 of 2)	2573	NR_119377	84777		NM_032691		DLGAP1-AS2	DLPAP1-AS2	DLGAP1 antisense RNA 2	ncRNA
183173	chr5	75339321	75339580	+	0	NA	intron (NM_001130996, intron 1 of 18)	AluYa5|SINE|Alu	2230	NM_000859	3156		NM_000859	ENSG00000113161	HMGCR	LDLCQ3|LGMDR28|MYPLG	3-hydroxy-3-methylglutaryl-CoA reductase	protein-coding
34206	chr10	129104771	129105130	+	0	NA	Intergenic	AluSx|SINE|Alu	192117	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
69828	chr14	99227101	99227650	+	0	NA	intron (NM_022898, intron 2 of 2)	MIR|SINE|MIR	44822	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
165457	chr3	98594871	98595100	+	0	NA	Intergenic	Intergenic	-1374	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
107236	chr18	37270151	37270330	+	0	NA	intron (NR_148519, intron 8 of 12)	intron (NR_148519, intron 8 of 12)	-4220	NR_134588	105372068		NR_134588	ENSG00000267202	LOC105372068	-	uncharacterized LOC105372068	ncRNA
58168	chr12	124961671	124962030	+	0	NA	intron (NM_032656, intron 15 of 26)	L1MB7|LINE|L1	27281	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
59234	chr13	23743251	23743700	+	0	NA	intron (NM_005932, intron 18 of 18)	intron (NM_005932, intron 18 of 18)	-145393	NM_001014442								
20072	chr1	186212671	186212830	+	0	NA	Intergenic	Intergenic	-83523	NM_001127709	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
11727	chr1	91885401	91887280	+	0	NA	promoter-TSS (NM_001195683)	promoter-TSS (NM_001195683)	-189	NM_003243	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
26903	chr10	26446051	26446150	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	7759	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
94976	chr17	32265351	32266100	+	0	NA	promoter-TSS (NM_001363836)	promoter-TSS (NM_001363836)	-107	NM_001330181	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
200488	chr6	135439001	135439580	+	0	NA	intron (NM_017651, intron 13 of 27)	MER44C|DNA|TcMar-Tigger	58450	NM_001134831	54806		NM_017651	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
217468	chr8	28781851	28782370	+	0	NA	intron (NR_026826, intron 9 of 14)	intron (NR_026826, intron 9 of 14)	80609	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
91941	chr17	7342921	7343380	+	0	NA	intron (NM_014716, intron 5 of 21)	intron (NM_014716, intron 5 of 21)	6621	NM_014716	9744		NM_014716	ENSG00000072818	ACAP1	CENTB1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding
58400	chr12	131903401	131904200	+	0	NA	intron (NM_003565, intron 3 of 27)	intron (NM_003565, intron 3 of 27)	9178	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
95949	chr17	39004071	39004230	+	0	NA	Intergenic	L2|LINE|L2	22960	NR_135645	105371766		NR_135645	ENSG00000266013	LINC02079	-	long intergenic non-protein coding RNA 2079	ncRNA
53292	chr12	64446171	64446730	+	0	NA	intron (NM_007235, intron 24 of 24)	intron (NM_007235, intron 24 of 24)	-5670	NM_013254	29110		NM_013254	ENSG00000183735	TBK1	FTDALS4|IIAE8|NAK|T2K	TANK binding kinase 1	protein-coding
215872	chr8	7615421	7615680	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-41152	NR_046343								
172751	chr4	2847171	2847330	+	0	NA	intron (NM_001286645, intron 1 of 17)	AluSq2|SINE|Alu	3100	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
96914	chr17	42144571	42144730	+	0	NA	intron (NM_201434, intron 1 of 6)	AluY|SINE|Alu	10339	NM_201434	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
148708	chr21	6482721	6483080	+	0	NA	Intergenic	Intergenic	-14279	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
181193	chr5	39147401	39148230	+	0	NA	intron (NM_199335, intron 3 of 17)	AluY|SINE|Alu	71748	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
163261	chr3	50294401	50294950	+	0	NA	intron (NM_001200031, intron 2 of 3)	intron (NM_001200031, intron 2 of 3)	-2246	NM_006764	7866		NM_006764	ENSG00000214706	IFRD2	IFNRP|SKMc15|SM15	interferon related developmental regulator 2	protein-coding
49633	chr12	28221771	28222450	+	0	NA	intron (NM_001352080, intron 2 of 13)	L1ME1|LINE|L1	-31372	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
145783	chr20	45372021	45372280	+	0	NA	TTS (NM_014477)	TTS (NM_014477)	6175	NM_014477	27296		NM_014477	ENSG00000124251	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
102098	chr17	74984201	74985080	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2992	NM_014603	30850		NM_014603	ENSG00000109089	CDR2L	HUMPPA	cerebellar degeneration related protein 2 like	protein-coding
112864	chr19	7597501	7597700	+	0	NA	intron (NM_020902, intron 1 of 16)	intron (NM_020902, intron 1 of 16)	1737	NM_001080429	57662		NM_020902	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA|PPP1R80	calmodulin regulated spectrin associated protein family member 3	protein-coding
175968	chr4	81468771	81469230	+	0	NA	intron (NM_001300736, intron 1 of 12)	intron (NM_001300736, intron 1 of 12)	2907	NM_152545	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
137948	chr2	201129671	201130000	+	0	NA	non-coding (NR_147253, exon 2 of 11)	non-coding (NR_147253, exon 2 of 11)	506	NM_001351592	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
13784	chr1	117351671	117352030	+	0	NA	Intergenic	L1MEi|LINE|L1	-15599	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
17586	chr1	156852151	156852880	+	0	NA	intron (NM_014215, intron 2 of 21)	intron (NM_014215, intron 2 of 21)	6602	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
110734	chr19	2323221	2323830	+	0	NA	intron (NM_016199, intron 3 of 3)	AluSz|SINE|Alu	5061	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
7403	chr1	32937471	32937630	+	0	NA	intron (NM_001127361, intron 8 of 8)	AluJr|SINE|Alu	27259	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
128423	chr2	55292271	55292750	+	0	NA	intron (NM_018084, intron 30 of 31)	intron (NM_018084, intron 30 of 31)	10191	NR_027258	344405		NM_001080459	ENSG00000293422	PRORSD1P	NCRNA00117|PRDXDD1P|Prdxdd1|ProX|ProXp-ala|Ybakd1	prolyl-tRNA synthetase associated domain containing 1, pseudogene	pseudo
194748	chr6	33894951	33896100	+	0	NA	intron (NR_038989, intron 1 of 2)	intron (NR_038989, intron 1 of 2)	1382	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
12570	chr1	108739551	108740050	+	0	NA	intron (NM_001144937, intron 11 of 12)	intron (NM_001144937, intron 11 of 12)	-6874	NM_007269	6814		NM_007269	ENSG00000116266	STXBP3	MUNC18-3|MUNC18C|PSP|UNC-18C	syntaxin binding protein 3	protein-coding
207806	chr7	50300221	50301200	+	0	NA	Intergenic	Intergenic	-3354	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
5969	chr1	26921051	26922950	+	0	NA	intron (NM_006600, intron 1 of 8)	CpG	257	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
145684	chr20	45002471	45003050	+	0	NA	intron (NM_006282, intron 9 of 10)	intron (NM_006282, intron 9 of 10)	36248	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
153377	chr22	24544021	24544580	+	0	NA	intron (NM_031444, intron 4 of 5)	intron (NM_031444, intron 4 of 5)	10838	NM_001284257	83606		NM_031444	ENSG00000138867	GUCD1	C22orf13|LLN4	guanylyl cyclase domain containing 1	protein-coding
122905	chr19	50567301	50568050	+	0	NA	intron (NM_001080457, intron 1 of 2)	intron (NM_001080457, intron 1 of 2)	760	NM_001080457	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
66071	chr14	58598171	58598730	+	0	NA	Intergenic	Intergenic	-35611	NR_046093	51339		NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding
22638	chr1	223716121	223717200	+	0	NA	intron (NM_001748, intron 1 of 20)	intron (NM_001748, intron 1 of 20)	4121	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
118881	chr19	38676551	38676930	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	29091	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
116399	chr19	17965651	17966100	+	0	NA	intron (NM_002248, intron 2 of 10)	intron (NM_002248, intron 2 of 10)	14573	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
37734	chr11	31799971	31800530	+	0	NA	intron (NM_001368908, intron 5 of 10)	intron (NM_001368908, intron 5 of 10)	411	NM_001368930	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
60425	chr13	40987871	40988650	+	0	NA	intron (NM_001370329, intron 1 of 9)	MIR3|SINE|MIR	-5361	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
156319	chr22	40647421	40648050	+	0	NA	Intergenic	Intergenic	-11016	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
33536	chr10	119266701	119267830	+	0	NA	intron (NM_005308, intron 1 of 15)	AluJo|SINE|Alu	59694	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
79965	chr16	1778171	1778430	+	0	NA	exon (NM_001324081, exon 4 of 7)	exon (NM_001324081, exon 4 of 7)	3522	NM_001324081	90864		NM_080861	ENSG00000162032	SPSB3	C16orf31|SSB3	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding
75856	chr15	69623851	69624150	+	0	NA	intron (NR_126437, intron 2 of 5)	intron (NR_126437, intron 2 of 5)	31800	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
60373	chr13	40933501	40934850	+	0	NA	intron (NM_001370329, intron 9 of 9)	intron (NM_001370329, intron 9 of 9)	-12401	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
45557	chr11	118784501	118784850	+	0	NA	intron (NM_004397, intron 2 of 13)	AluSg|SINE|Alu	6273	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
237198	chrX	107894071	107894380	+	0	NA	TTS (NR_110395)	TTS (NR_110395)	41755	NR_110395	101928335		NR_110395	ENSG00000236064	LOC101928335	-	uncharacterized LOC101928335	ncRNA
53561	chr12	67627151	67627330	+	0	NA	Intergenic	Intergenic	-21505	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
190470	chr5	180091301	180091500	+	0	NA	Intergenic	L1M4b|LINE|L1	-19641	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
50630	chr12	48708721	48709300	+	0	NA	intron (NM_001240, intron 2 of 8)	AluJo|SINE|Alu	7697	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
141890	chr20	833151	834450	+	0	NA	promoter-TSS (NM_001289146)	promoter-TSS (NM_001289146)	85	NM_001289145	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
91258	chr17	3972121	3973050	+	0	NA	Intergenic	Intergenic	-4518	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
151891	chr22	18892481	18892930	+	0	NA	intron (NR_136571, intron 1 of 11)	HSATI|Satellite|Satellite	1726	NR_136571	100996432		NR_136571		FAM230F	LINC01663	family with sequence similarity 230 member F	ncRNA
111811	chr19	4473271	4473450	+	0	NA	promoter-TSS (NM_001348169)	promoter-TSS (NM_001348169)	-594	NM_001348169	84717		NM_032631	ENSG00000167674	HDGFL2	HDGF-2|HDGF2|HDGFRP2|HRP-2|HRP2	HDGF like 2	protein-coding
127732	chr2	43559471	43560100	+	0	NA	intron (NR_144316, intron 16 of 36)	intron (NR_144316, intron 16 of 36)	36189	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
52277	chr12	54550251	54550430	+	0	NA	intron (NM_001288769, intron 1 of 14)	intron (NM_001288769, intron 1 of 14)	260	NM_001288769	5153		NM_000924	ENSG00000123360	PDE1B	HEL-S-79p|PDE1B1|PDES1B	phosphodiesterase 1B	protein-coding
67481	chr14	70913101	70913300	+	0	NA	intron (NM_014982, intron 1 of 35)	L2a|LINE|L2	5741	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
88456	chr16	84995551	84996180	+	0	NA	intron (NM_017740, intron 2 of 7)	intron (NM_017740, intron 2 of 7)	15670	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
122655	chr19	49859351	49859880	+	0	NA	promoter-TSS (NR_110730)	promoter-TSS (NR_110730)	-326	NR_110730	101928378		NR_110730		PTOV1-AS2	-	PTOV1 antisense RNA 2	ncRNA
87397	chr16	70521701	70521950	+	0	NA	intron (NR_158212, intron 1 of 18)	AluY|SINE|Alu	1729	NM_001195139	25839		NM_015386	ENSG00000103051	COG4	CDG2J|COD1|SWILS	component of oligomeric golgi complex 4	protein-coding
79990	chr16	1822101	1822300	+	0	NA	intron (NM_001040427, intron 4 of 9)	intron (NM_001040427, intron 4 of 9)	4625	NM_005326	3029		NM_005326	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
223839	chr8	145074801	145075000	+	0	NA	Intergenic	L1PA6|LINE|L1	22433	NM_023080	65265		NM_023080	ENSG00000182307	C8orf33	-	chromosome 8 open reading frame 33	protein-coding
110633	chr19	2225771	2225930	+	0	NA	intron (NM_032482, intron 26 of 27)	intron (NM_032482, intron 26 of 27)	8299	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
10157	chr1	61052171	61052980	+	0	NA	Intergenic	Intergenic	-24652	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
183720	chr5	81003801	81004400	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-43193	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
58679	chr12	132543351	132544250	+	0	NA	TTS (NM_001382743)	TTS (NM_001382743)	-38197	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
7093	chr1	32072121	32074350	+	0	NA	intron (NM_018056, intron 1 of 8)	CpG	296	NM_001319678	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
111536	chr19	4027271	4027700	+	0	NA	intron (NM_015897, intron 3 of 10)	L1MB7|LINE|L1	19749	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
28987	chr10	63263571	63264080	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSz|SINE|Alu	5398	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
147394	chr20	58694471	58694630	+	0	NA	exon (NM_024663, exon 3 of 12)	exon (NM_024663, exon 3 of 12)	1750	NM_024663	79716		NM_024663	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase like 1	protein-coding
189010	chr5	168576071	168576430	+	0	NA	intron (NM_024594, intron 1 of 6)	intron (NM_024594, intron 1 of 6)	3118	NM_024594	79646		NM_024594	ENSG00000120137	PANK3	-	pantothenate kinase 3	protein-coding
170935	chr3	194314471	194314630	+	0	NA	Intergenic	Intergenic	-1746	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
153520	chr22	26550371	26550530	+	0	NA	intron (NM_001362923, intron 1 of 7)	intron (NM_001362923, intron 1 of 7)	4873	NR_031615	100313914		NR_031615	ENSG00000221760	MIR548J	MIRN548J|hsa-mir-548j	microRNA 548j	ncRNA
84449	chr16	30421651	30421950	+	0	NA	Intergenic	AluY|SINE|Alu	-2041	NR_145731	109616959		NR_145731	ENSG00000199787	SNORA80C	-	small nucleolar RNA, H/ACA box 80C	snoRNA
223765	chr8	144528321	144529280	+	0	NA	TTS (NM_001308208)	TTS (NM_001308208)	311	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
85476	chr16	50692801	50694180	+	0	NA	promoter-TSS (NM_001370466)	promoter-TSS (NM_001370466)	-116	NR_163434	64127		NM_022162	ENSG00000167207	NOD2	ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS	nucleotide binding oligomerization domain containing 2	protein-coding
217004	chr8	23163211	23164830	+	0	NA	promoter-TSS (NM_003840)	promoter-TSS (NM_003840)	7	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
227051	chr9	83974801	83975000	+	0	NA	intron (NM_031263, intron 6 of 16)	intron (NM_031263, intron 6 of 16)	-5043	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
6079	chr1	27231721	27232250	+	0	NA	Intergenic	AluY|SINE|Alu	-2647	NM_001276252	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
120909	chr19	45607071	45608100	+	0	NA	Intergenic	Intergenic	-5373	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
104117	chr17	80312371	80312530	+	0	NA	intron (NM_020954, intron 14 of 16)	intron (NM_020954, intron 14 of 16)	51598	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
234119	chrX	9642401	9643000	+	0	NA	intron (NM_001139467, intron 3 of 16)	MER58B|DNA|hAT-Charlie	123147	NM_000273	4935		NM_000273	ENSG00000101850	GPR143	NYS6|OA1	G protein-coupled receptor 143	protein-coding
116093	chr19	17268321	17268830	+	0	NA	intron (NM_014173, intron 1 of 8)	AluSp|SINE|Alu	1132	NM_014173	29086		NM_014173	ENSG00000105393	BABAM1	C19orf62|HSPC142|MERIT40|NBA1	BRISC and BRCA1 A complex member 1	protein-coding
221447	chr8	124251771	124252030	+	0	NA	Intergenic	Intergenic	-4502	NR_125420	101927588		NR_125420	ENSG00000214803	LOC101927588	-	uncharacterized LOC101927588	ncRNA
156013	chr22	39943401	39943930	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	-3152	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
69730	chr14	98408851	98408950	+	0	NA	Intergenic	L2c|LINE|L2	-302713	NR_161367	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
16618	chr1	155079601	155080200	+	0	NA	intron (NM_004952, intron 1 of 4)	CpG	1063	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
88305	chr16	84141051	84141420	+	0	NA	intron (NM_001146051, intron 1 of 6)	L1ME3D|LINE|L1	3942	NM_031463	83693		NM_031463	ENSG00000103160	HSDL1	SDR12C3	hydroxysteroid dehydrogenase like 1	protein-coding
217331	chr8	27515851	27516250	+	0	NA	intron (NM_001256484, intron 7 of 18)	MER91B|DNA|hAT-Tip100	24907	NM_001256482	2053		NM_001979	ENSG00000120915	EPHX2	ABHD20|CEH|SEH	epoxide hydrolase 2	protein-coding
68887	chr14	91331821	91332900	+	0	NA	intron (NM_001080414, intron 10 of 29)	intron (NM_001080414, intron 10 of 29)	-78480	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
137660	chr2	197431601	197432150	+	0	NA	intron (NM_001005526, intron 1 of 4)	AluJr4|SINE|Alu	3153	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
209791	chr7	87624771	87625630	+	0	NA	intron (NM_001348945, intron 2 of 31)	AluY|SINE|Alu	-3198	NM_138290	154661		NM_138290	ENSG00000105784	RUNDC3B	RPIB9|RPIP9	RUN domain containing 3B	protein-coding
175640	chr4	76354371	76354800	+	0	NA	intron (NM_001042784, intron 14 of 23)	Tigger9b|DNA|TcMar-Tigger	48559	NM_003943	8987		NM_003943	ENSG00000118804	STBD1	GENEX3414|GENX-3414	starch binding domain 1	protein-coding
34881	chr11	367851	368550	+	0	NA	Intergenic	Intergenic	-1299	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
176221	chr4	84503951	84504130	+	0	NA	Intergenic	Intergenic	-4748	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
55659	chr12	107334721	107335180	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	14362	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
237166	chrX	107659571	107660130	+	0	NA	Intergenic	Intergenic	31340	NM_002764	5631		NM_002764	ENSG00000147224	PRPS1	ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI	phosphoribosyl pyrophosphate synthetase 1	protein-coding
51651	chr12	53041501	53041700	+	0	NA	3' UTR (NM_001417, exon 15 of 15)	3' UTR (NM_001417, exon 15 of 15)	-5391	NM_198316	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
49354	chr12	22321151	22321950	+	0	NA	intron (NM_001304450, intron 1 of 3)	intron (NM_001304450, intron 1 of 3)	13164	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
56245	chr12	111991721	111992530	+	0	NA	intron (NM_138341, intron 2 of 9)	intron (NM_138341, intron 2 of 9)	21040	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
209460	chr7	76468571	76468730	+	0	NA	intron (NM_001102594, intron 2 of 10)	AluSx1|SINE|Alu	6350	NR_003262	619190		NR_003262		FDPSP2	FDPSL2|FDPSL2A|FPSL2	farnesyl diphosphate synthase pseudogene 2	pseudo
213853	chr7	142152151	142152250	+	0	NA	intron (NM_001293626, intron 15 of 47)	intron (NM_001293626, intron 15 of 47)	40482	NM_001293626	93432		NM_001008748	ENSG00000257743	MGAM2	-	maltase-glucoamylase 2 (putative)	protein-coding
120659	chr19	45086421	45086680	+	0	NA	intron (NR_134887, intron 1 of 1)	MIR|SINE|MIR	3841	NR_134887	105372419		NR_134887	ENSG00000267348	GEMIN7-AS1	-	GEMIN7 antisense RNA 1	ncRNA
71399	chr14	105525451	105525550	+	0	NA	Intergenic	L1MD2|LINE|L1	-1083	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
195223	chr6	36140871	36142050	+	0	NA	non-coding (NR_072996, exon 10 of 10)	non-coding (NR_072996, exon 10 of 10)	10947	NM_002754	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
75391	chr15	65752121	65752500	+	0	NA	intron (NM_001376919, intron 4 of 31)	(A)n|Simple_repeat|Simple_repeat	-32978	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
32591	chr10	103501901	103502100	+	0	NA	intron (NR_120675, intron 2 of 3)	FLAM_A|SINE|Alu	8295	NM_004210	9148		NM_004210	ENSG00000107954	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding
210567	chr7	100351751	100352900	+	0	NA	promoter-TSS (NR_103728)	promoter-TSS (NR_103728)	7	NR_103728	101752334		NR_103728		PVRIG2P	-	PVR related immunoglobulin domain containing 2, pseudogene	pseudo
34188	chr10	128180671	128181400	+	0	NA	Intergenic	L1ME1|LINE|L1	-54612	NM_001145966	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
207587	chr7	44957921	44958380	+	0	NA	Intergenic	AluY|SINE|Alu	20865	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
195347	chr6	36630221	36630880	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-8038	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
164969	chr3	71281101	71281500	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-8458	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
137589	chr2	197276771	197277150	+	0	NA	intron (NR_046837, intron 5 of 5)	AluY|SINE|Alu	25559	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
167916	chr3	136168721	136169650	+	0	NA	intron (NM_018133, intron 1 of 1)	intron (NM_018133, intron 1 of 1)	25283	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
172939	chr4	3519271	3520100	+	0	NA	intron (NR_110005, intron 3 of 7)	intron (NR_110005, intron 3 of 7)	12464	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
48577	chr12	10293151	10294250	+	0	NA	intron (NM_001351060, intron 2 of 8)	Tigger1|DNA|TcMar-Tigger	-10746	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
143521	chr20	31546921	31548030	+	0	NA	intron (NM_178580, intron 4 of 12)	CpG	25788	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
78876	chr15	100595001	100595430	+	0	NA	intron (NR_148017, intron 1 of 6)	L1MD|LINE|L1	6969	NR_148018	55180		NM_018148	ENSG00000140471	LINS1	LINS|MRT27|WINS1	lines homolog 1	protein-coding
146652	chr20	50387471	50387630	+	0	NA	Intergenic	L2a|LINE|L2	-66208	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
138152	chr2	202373871	202374230	+	0	NA	Intergenic	AluSp|SINE|Alu	-2277	NM_001204	659		NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding
189237	chr5	171962321	171962830	+	0	NA	intron (NM_012300, intron 1 of 12)	intron (NM_012300, intron 1 of 12)	44063	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
80312	chr16	2296001	2296200	+	0	NA	intron (NM_001089, intron 17 of 32)	intron (NM_001089, intron 17 of 32)	21480	NR_039868	100616241		NR_039868	ENSG00000264004	MIR4717	-	microRNA 4717	ncRNA
159067	chr3	11720201	11721050	+	0	NA	promoter-TSS (NM_001284390)	promoter-TSS (NM_001284390)	-86	NM_014667	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
61524	chr13	59680471	59680780	+	0	NA	intron (NM_001042517, intron 27 of 27)	intron (NM_001042517, intron 27 of 27)	-332093	NR_109838	100874195		NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
188927	chr5	160425221	160425880	+	0	NA	intron (NM_001282382, intron 3 of 4)	L1M5|LINE|L1	3640	NM_001282382	9232		NM_004219	ENSG00000164611	PTTG1	EAP1|ECRAR|HPTTG|PTTG|TUTR1	PTTG1 regulator of sister chromatid separation, securin	protein-coding
131035	chr2	88180851	88181730	+	0	NA	intron (NM_001384382, intron 4 of 6)	intron (NM_001384382, intron 4 of 6)	10944	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
12621	chr1	109104421	109104680	+	0	NA	Intergenic	Intergenic	4357	NR_003023	677766		NR_003023	ENSG00000278249	SCARNA2	HBII-382|mgU2-25/61	small Cajal body-specific RNA 2	ncRNA
102066	chr17	74920501	74921250	+	0	NA	intron (NM_173477, intron 1 of 2)	intron (NM_173477, intron 1 of 2)	2380	NM_173477	124590		NM_173477	ENSG00000182040	USH1G	ANKS4A|SANS	USH1 protein network component sans	protein-coding
77432	chr15	84171101	84171600	+	0	NA	promoter-TSS (NR_033787)	promoter-TSS (NR_033787)	-366	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
34723	chr10	133637301	133637950	+	0	NA	Intergenic	CpG	-10830	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
220002	chr8	90003471	90004080	+	0	NA	intron (NM_001359, intron 1 of 9)	AluSc|SINE|Alu	2298	NM_001359	1666		NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	2,4-dienoyl-CoA reductase 1	protein-coding
158406	chr22	50523721	50524300	+	0	NA	exon (NM_005138, exon 2 of 2)	exon (NM_005138, exon 2 of 2)	1588	NM_005138	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
146902	chr20	51539271	51539430	+	0	NA	intron (NM_001258292, intron 1 of 9)	intron (NM_001258292, intron 1 of 9)	3369	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
32262	chr10	102052801	102053130	+	0	NA	intron (NM_024541, intron 1 of 25)	intron (NM_024541, intron 1 of 25)	3208	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
175996	chr4	81796901	81797250	+	0	NA	Intergenic	L1MA8|LINE|L1	-325168	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
181342	chr5	40416471	40416630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-263365	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
117207	chr19	19394501	19395330	+	0	NA	intron (NM_001384535, intron 1 of 10)	intron (NM_001384535, intron 1 of 10)	9072	NM_001384518	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
236401	chrX	71147151	71147250	+	0	NA	intron (NM_001321276, intron 1 of 6)	intron (NM_001321276, intron 1 of 6)	2359	NM_001321276	54413		NM_018977	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
192682	chr6	26251201	26252480	+	0	NA	exon (NM_003524, exon 1 of 1)	exon (NM_003524, exon 1 of 1)	226	NM_003524	8345		NM_003524	ENSG00000275713	H2BC9	H2B/j|H2BFJ|HIST1H2BH	H2B clustered histone 9	protein-coding
210710	chr7	100588301	100589050	+	0	NA	promoter-TSS (NM_001163499)	promoter-TSS (NM_001163499)	-938	NM_001163499	26261		NM_012172	ENSG00000106336	FBXO24	FBX24	F-box protein 24	protein-coding
92361	chr17	8194621	8195150	+	0	NA	Intergenic	AluSx|SINE|Alu	-4705	NM_017622	54785		NM_017622	ENSG00000196544	BORCS6	C17orf59|PRO2472	BLOC-1 related complex subunit 6	protein-coding
77254	chr15	81311471	81311630	+	0	NA	non-coding (NR_135013, exon 5 of 5)	non-coding (NR_135013, exon 5 of 5)	12591	NR_135013	80765		NM_030574	ENSG00000172345	STARD5	-	StAR related lipid transfer domain containing 5	protein-coding
80588	chr16	2903671	2904800	+	0	NA	Intergenic	CpG	-7696	NM_001308068	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
169826	chr3	177140301	177141000	+	0	NA	intron (NM_001374329, intron 1 of 15)	HAL1ME|LINE|L1	55828	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
141642	chr2	241726351	241726730	+	0	NA	3' UTR (NM_032329, exon 8 of 8)	3' UTR (NM_032329, exon 8 of 8)	-8090	NM_001287249	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
113356	chr19	8684051	8684150	+	0	NA	Intergenic	Intergenic	14695	NM_178525	284382		NM_178525	ENSG00000181786	ACTL9	HSD21|SPGF53	actin like 9	protein-coding
95443	chr17	36137871	36138030	+	0	NA	Intergenic	Intergenic	34123	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
211235	chr7	102645471	102645630	+	0	NA	intron (NM_032959, intron 4 of 8)	intron (NM_032959, intron 4 of 8)	-2759	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
191012	chr6	3077501	3077900	+	0	NA	intron (NM_001354931, intron 2 of 9)	intron (NM_001354931, intron 2 of 9)	9206	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
230564	chr9	128494351	128494650	+	0	NA	intron (NM_001351578, intron 16 of 20)	intron (NM_001351578, intron 16 of 20)	-10192	NM_001499	2733		NM_001499	ENSG00000119392	GLE1	CAAHC|CAAHD|GLE1L|LCCS|LCCS1|hGLE1	GLE1 RNA export mediator	protein-coding
214183	chr7	146115921	146116400	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-658111	NM_014141	26047		NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein 2	protein-coding
26409	chr10	17053521	17053780	+	0	NA	intron (NM_001081, intron 22 of 66)	L1ME2|LINE|L1	76161	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
200601	chr6	136720201	136720600	+	0	NA	intron (NM_005923, intron 2 of 29)	intron (NM_005923, intron 2 of 29)	-63647	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
208160	chr7	64625101	64625300	+	0	NA	Intergenic	Intergenic	-40883	NM_001282360	51427		NM_016220	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
173287	chr4	7064751	7065100	+	0	NA	intron (NM_025196, intron 1 of 3)	FRAM|SINE|Alu	3139	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
123036	chr19	51166771	51167500	+	0	NA	promoter-TSS (NR_047529)	promoter-TSS (NR_047529)	-193	NR_047530	284367		NR_002804	ENSG00000291114	SIGLEC17P	HSPC078|SIGLECP2|SIGLECP3	sialic acid binding Ig like lectin 17, pseudogene	pseudo
132438	chr2	105840021	105840280	+	0	NA	intron (NM_001004722, intron 2 of 3)	L2a|LINE|L2	-11697	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
108666	chr18	76821301	76822500	+	0	NA	promoter-TSS (NM_001306089)	promoter-TSS (NM_001306089)	395	NR_040024	100131655		NR_040024	ENSG00000264278	ZNF236-DT	-	ZNF236 divergent transcript	ncRNA
192557	chr6	25370351	25370450	+	0	NA	intron (NM_001173977, intron 2 of 36)	intron (NM_001173977, intron 2 of 36)	91026	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
198082	chr6	90265571	90265730	+	0	NA	intron (NM_021813, intron 2 of 8)	intron (NM_021813, intron 2 of 8)	31193	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
169044	chr3	153155701	153155900	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6426	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
215976	chr8	8811871	8812450	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	81470	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
51709	chr12	53198501	53199600	+	0	NA	intron (NR_104181, intron 2 of 11)	intron (NR_104181, intron 2 of 11)	8201	NR_104181	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
55701	chr12	107763221	107763850	+	0	NA	Intergenic	L1ME1|LINE|L1	-2398	NM_012406	11108		NM_012406	ENSG00000110851	PRDM4	PFM1	PR/SET domain 4	protein-coding
56032	chr12	110433401	110434180	+	0	NA	Intergenic	AluY|SINE|Alu	16547	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
193733	chr6	31252471	31253400	+	0	NA	Intergenic	LTR39|LTR|ERV1	19157	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
32802	chr10	109890551	109891000	+	0	NA	intron (NM_001324134, intron 3 of 18)	intron (NM_001324134, intron 3 of 18)	32471	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
157593	chr22	46005371	46005630	+	0	NA	Intergenic	Intergenic	-1116	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
117513	chr19	20077671	20079300	+	0	NA	intron (NM_007138, intron 1 of 3)	intron (NM_007138, intron 1 of 3)	485	NM_007138	7643		NM_007138	ENSG00000213988	ZNF90	HTF9	zinc finger protein 90	protein-coding
186352	chr5	134845471	134847200	+	0	NA	intron (NM_001135586, intron 1 of 1)	CpG	367	NM_001300894	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
146587	chr20	50107871	50108230	+	0	NA	intron (NM_001257399, intron 1 of 4)	L2a|LINE|L2	5100	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
200951	chr6	139177371	139177900	+	0	NA	3' UTR (NM_016217, exon 4 of 4)	3' UTR (NM_016217, exon 4 of 4)	42555	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
107009	chr18	32070151	32070650	+	0	NA	3' UTR (NM_017831, exon 6 of 6)	3' UTR (NM_017831, exon 6 of 6)	-21474	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
194253	chr6	32547321	32547580	+	0	NA	Intergenic	LTR12C|LTR|ERV1	12552	NR_001298	3128		NR_001298	ENSG00000290878	HLA-DRB6	-	major histocompatibility complex, class II, DR beta 6 (pseudogene)	pseudo
6200	chr1	27457701	27458100	+	0	NA	intron (NM_006990, intron 1 of 8)	AluJr4|SINE|Alu	32267	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
237007	chrX	102154951	102156280	+	0	NA	5' UTR (NM_001159560, exon 1 of 3)	5' UTR (NM_001159560, exon 1 of 3)	175	NM_001159560	340542		NM_001012978	ENSG00000184515	BEX5	NGFRAP1L1	brain expressed X-linked 5	protein-coding
205838	chr7	24895971	24896430	+	0	NA	intron (NM_015550, intron 1 of 22)	LTR82B|LTR|ERVL	-3579	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
20593	chr1	198759571	198760780	+	0	NA	Intergenic	L1PA13|LINE|L1	98807	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
77535	chr15	84724451	84725430	+	0	NA	Intergenic	Intergenic	-8480	NM_001271920	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
207652	chr7	45078251	45078800	+	0	NA	Intergenic	Intergenic	10444	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
231766	chr9	132237621	132238980	+	0	NA	intron (NM_032536, intron 5 of 7)	intron (NM_032536, intron 5 of 7)	76242	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
202735	chr6	158993151	158994000	+	0	NA	intron (NR_144434, intron 2 of 8)	L1MB3|LINE|L1	6612	NR_144434	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
90438	chr17	1360471	1360630	+	0	NA	intron (NR_024058, intron 5 of 6)	AluSx1|SINE|Alu	39672	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
236293	chrX	66731471	66731650	+	0	NA	Intergenic	Intergenic	-92262	NM_001199687	60401		NM_021783	ENSG00000131080	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
137204	chr2	191192771	191193100	+	0	NA	Intergenic	AluY|SINE|Alu	-41339	NM_001243835	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
226457	chr9	71719401	71719900	+	0	NA	intron (NM_001135820, intron 11 of 22)	intron (NM_001135820, intron 11 of 22)	48863	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
185017	chr5	115333201	115333400	+	0	NA	Intergenic	L1MDa|LINE|L1	-36646	NM_001375899	153733		NM_152549	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
134365	chr2	136214301	136214500	+	0	NA	Intergenic	Intergenic	-96251	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
39284	chr11	58531901	58532100	+	0	NA	intron (NM_004811, intron 7 of 8)	LTR12C|LTR|ERV1	-23700	NM_001005218	219968		NM_001005218	ENSG00000198283	OR5B21	-	olfactory receptor family 5 subfamily B member 21	protein-coding
220228	chr8	96327751	96328330	+	0	NA	intron (NM_014754, intron 10 of 12)	intron (NM_014754, intron 10 of 12)	58608	NR_125829	102724804		NR_125828		LOC102724804	-	uncharacterized LOC102724804	ncRNA
159106	chr3	12578351	12579580	+	0	NA	intron (NM_014160, intron 6 of 7)	intron (NM_014160, intron 6 of 7)	-17966	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
217885	chr8	37872551	37873050	+	0	NA	exon (NM_001002814, exon 4 of 6)	exon (NM_001002814, exon 4 of 6)	-22939	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
200865	chr6	138691971	138692790	+	0	NA	intron (NR_033896, intron 1 of 3)	CpG	712	NR_033896	441172		NR_033896		NHSL1-AS1	-	NHSL1 antisense RNA 1	ncRNA
207902	chr7	50449751	50450850	+	0	NA	promoter-TSS (NM_001287496)	promoter-TSS (NM_001287496)	50	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
154242	chr22	31598051	31598600	+	0	NA	intron (NM_001007467, intron 15 of 32)	L1ME2|LINE|L1	23206	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
116480	chr19	18106771	18106930	+	0	NA	intron (NM_015016, intron 1 of 26)	AluSq2|SINE|Alu	-8034	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
58886	chr13	18643951	18644050	+	0	NA	Intergenic	Intergenic	96099	NR_047508	100874164		NR_047508		LINC00417	-	long intergenic non-protein coding RNA 417	ncRNA
193634	chr6	30811571	30811830	+	0	NA	Intergenic	AluJr4|SINE|Alu	18959	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
232109	chr9	133709001	133710000	+	0	NA	intron (NM_001134707, intron 10 of 20)	intron (NM_001134707, intron 10 of 20)	28852	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
102107	chr17	75004421	75004880	+	0	NA	3' UTR (NM_014603, exon 5 of 5)	3' UTR (NM_014603, exon 5 of 5)	-8020	NM_001303265	3396		NM_001545	ENSG00000167862	MRPL58	DS-1|DS1|ICT1|MRP-L58|mL62	mitochondrial ribosomal protein L58	protein-coding
139452	chr2	223859071	223859430	+	0	NA	Intergenic	AluJb|SINE|Alu	-21668	NR_110905	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
205467	chr7	17300671	17300830	+	0	NA	intron (NM_001621, intron 1 of 10)	intron (NM_001621, intron 1 of 10)	2098	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
177449	chr4	113394721	113395080	+	0	NA	Intergenic	Intergenic	102061	NM_001354279	287		NM_001148	ENSG00000145362	ANK2	ANK-2|CFAP87|FAP87|LQT4|brank-2	ankyrin 2	protein-coding
31649	chr10	97400801	97402150	+	0	NA	promoter-TSS (NM_001284337)	promoter-TSS (NM_001284337)	-105	NM_001145114	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
135469	chr2	161309551	161310150	+	0	NA	intron (NM_005805, intron 1 of 11)	intron (NM_005805, intron 1 of 11)	1425	NM_005805	10213		NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	proteasome 26S subunit, non-ATPase 14	protein-coding
231798	chr9	132358221	132358700	+	0	NA	Intergenic	AluSg|SINE|Alu	-3474	NM_015046	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
35641	chr11	1841401	1841800	+	0	NA	TTS (NM_001145829)	TTS (NM_001145829)	1393	NM_001145841	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
129123	chr2	65235301	65235500	+	0	NA	intron (NM_005722, intron 1 of 8)	intron (NM_005722, intron 1 of 8)	7569	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
67280	chr14	69260871	69261750	+	0	NA	intron (NM_020692, intron 1 of 15)	CpG	1152	NM_020692	57452		NM_020692	ENSG00000100626	GALNT16	GALNACT16|GALNTL1|GalNAc-T16	polypeptide N-acetylgalactosaminyltransferase 16	protein-coding
200739	chr6	137743471	137743830	+	0	NA	Intergenic	AluJb|SINE|Alu	-4613	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
130737	chr2	86786001	86787300	+	0	NA	intron (NR_168479, intron 2 of 2)	intron (NR_168479, intron 2 of 2)	4263	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
199875	chr6	127812801	127813000	+	0	NA	exon (NM_001164685, exon 4 of 7)	exon (NM_001164685, exon 4 of 7)	42288	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
199340	chr6	113980971	113981200	+	0	NA	intron (NR_125845, intron 1 of 9)	MamGypLTR3|LTR|Gypsy	-9937	NR_033441	3066		NM_001527	ENSG00000196591	HDAC2	HD2|KDAC2|RPD3|YAF1	histone deacetylase 2	protein-coding
187694	chr5	143353951	143354850	+	0	NA	intron (NR_157096, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	48883	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
44296	chr11	102322451	102322980	+	0	NA	5' UTR (NM_001165, exon 2 of 9)	5' UTR (NM_001165, exon 2 of 9)	5231	NM_001165	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
62276	chr13	98581771	98582330	+	0	NA	Intergenic	Intergenic	4795	NR_046542	100874069		NR_046542		STK24-AS1	-	STK24 antisense RNA 1	ncRNA
167812	chr3	133581071	133581430	+	0	NA	intron (NM_001282764, intron 2 of 4)	AluJr|SINE|Alu	6816	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
132867	chr2	111114621	111114880	+	0	NA	intron (NR_122074, intron 1 of 3)	intron (NR_122074, intron 1 of 3)	838	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
193116	chr6	28950621	28951400	+	0	NA	Intergenic	Intergenic	7226	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
78689	chr15	95879451	95879980	+	0	NA	Intergenic	LFSINE_Vert|SINE|tRNA	248126	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
202869	chr6	159863151	159863700	+	0	NA	Intergenic	Intergenic	-27563	NM_002377	4142		NM_002377	ENSG00000130368	MAS1	MAS|MGRA	MAS1 proto-oncogene, G protein-coupled receptor	protein-coding
124915	chr2	8514121	8514380	+	0	NA	Intergenic	Intergenic	69542	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
128055	chr2	47785971	47786680	+	0	NA	intron (NM_001281494, intron 1 of 9)	intron (NM_001281494, intron 1 of 9)	2370	NM_001281494	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
185384	chr5	127909151	127909350	+	0	NA	intron (NM_001317938, intron 6 of 6)	intron (NM_001317938, intron 6 of 6)	173925	NR_152805	644873		NR_015360	ENSG00000245937	SLC12A2-DT	LINC01184	SLC12A2 divergent transcript	ncRNA
42429	chr11	69122851	69123750	+	0	NA	Intergenic	Intergenic	-32635	NR_161183	107984345		NM_001369201	ENSG00000284713	SMIM38	-	small integral membrane protein 38	protein-coding
121132	chr19	46077001	46077750	+	0	NA	non-coding (NR_125344, exon 1 of 2)	non-coding (NR_125344, exon 1 of 2)	254	NR_125344	444882		NM_001002923	ENSG00000204869	IGFL4	-	IGF like family member 4	protein-coding
62083	chr13	94535951	94536250	+	0	NA	intron (NM_001322186, intron 1 of 9)	intron (NM_001322186, intron 1 of 9)	13306	NM_001322186	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
72287	chr15	30968401	30968600	+	0	NA	intron (NM_017762, intron 5 of 15).2	intron (NM_017762, intron 5 of 15).2	23128	NM_017762	54893		NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
118335	chr19	35608271	35608580	+	0	NA	Intergenic	Intergenic	-4310	NM_015302	23354		NM_015302	ENSG00000249115	HAUS5	KIAA0841|dgt5	HAUS augmin like complex subunit 5	protein-coding
45932	chr11	121079601	121079800	+	0	NA	intron (NM_001378761, intron 7 of 29)	intron (NM_001378761, intron 7 of 29)	-21543	NM_005422	7007		NM_005422	ENSG00000109927	TECTA	DFNA12|DFNA8|DFNB21	tectorin alpha	protein-coding
96844	chr17	41979021	41979480	+	0	NA	intron (NM_003315, intron 12 of 13)	AluSx1|SINE|Alu	11453	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
230105	chr9	127586101	127586850	+	0	NA	Intergenic	Intergenic	-7444	NM_001035534	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
179647	chr4	189202371	189202530	+	0	NA	Intergenic	Intergenic	425793	NR_149102	105377610		NR_149102	ENSG00000251619	LINC02508	-	long intergenic non-protein coding RNA 2508	ncRNA
187793	chr5	146210571	146211130	+	0	NA	intron (NM_018989, intron 1 of 20)	AluY|SINE|Alu	7245	NM_018989	54439		NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18|ZC3H20	RNA binding motif protein 27	protein-coding
146806	chr20	50987671	50988230	+	0	NA	Intergenic	Intergenic	29132	NM_014484	27304		NM_014484	ENSG00000124217	MOCS3	UBA4	molybdenum cofactor synthesis 3	protein-coding
238800	chrX	154392101	154392430	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5800	NM_001303625	6134		NM_006013	ENSG00000147403	RPL10	AUTSX5|DXS648|DXS648E|L10|MRXS35|NOV|QM|uL16	ribosomal protein L10	protein-coding
175892	chr4	80074451	80074630	+	0	NA	Intergenic	L2a|LINE|L2	-1068	NM_001286780	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
101495	chr17	67649751	67649850	+	0	NA	intron (NM_181671, intron 6 of 9)	MER21C|LTR|ERVL	-68033	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
81314	chr16	4700271	4701230	+	0	NA	intron (NM_133450, intron 11 of 17)	intron (NM_133450, intron 11 of 17)	7032	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
169922	chr3	177995551	177995650	+	0	NA	Intergenic	Intergenic	178735	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
108698	chr18	77059621	77059930	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-42720	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
60522	chr13	41401571	41402030	+	0	NA	Intergenic	Charlie2b|DNA|hAT-Charlie	-40764	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
145061	chr20	38461201	38461730	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-11378	NM_020336	57148		NM_020336	ENSG00000170471	RALGAPB	KIAA1219|RalGAPbeta	Ral GTPase activating protein non-catalytic subunit beta	protein-coding
168232	chr3	141313401	141313650	+	0	NA	Intergenic	MER66B|LTR|ERV1	-10661	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
7806	chr1	36275021	36275280	+	0	NA	intron (NM_001321471, intron 3 of 12)	AluY|SINE|Alu	-31218	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
73248	chr15	41790801	41791550	+	0	NA	intron (NR_049762, intron 2 of 28)	intron (NR_049762, intron 2 of 28)	16691	NR_049762	23005		NM_014994	ENSG00000137802	MAPKBP1	JNKBP-1|JNKBP1|NPHP20	mitogen-activated protein kinase binding protein 1	protein-coding
13467	chr1	114570371	114570530	+	0	NA	intron (NM_005872, intron 5 of 6)	intron (NM_005872, intron 5 of 6)	11165	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
161933	chr3	46097471	46098900	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-12341	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
5582	chr1	25993801	25994300	+	0	NA	intron (NM_000437, intron 1 of 10)	intron (NM_000437, intron 1 of 10)	4013	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
155060	chr22	37518101	37518330	+	0	NA	intron (NM_014550, intron 1 of 19)	intron (NM_014550, intron 1 of 19)	1200	NM_014550	29775		NM_014550	ENSG00000100065	CARD10	BIMP1|CARMA3|IMD89	caspase recruitment domain family member 10	protein-coding
107303	chr18	44805571	44805940	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	104880	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
185230	chr5	122847271	122848250	+	0	NA	intron (NR_146145, intron 1 of 7)	AluJb|SINE|Alu	2147	NM_014035	28966		NM_014035	ENSG00000064652	SNX24	PRO1284|SBBI31	sorting nexin 24	protein-coding
206394	chr7	30800701	30800950	+	0	NA	intron (NR_037598, intron 7 of 19)	intron (NR_037598, intron 7 of 19)	29408	NM_032222	84182		NM_032222	ENSG00000106125	MINDY4	AQP-1|AQP1|C7orf67|CHIP28|FAM188B	MINDY lysine 48 deubiquitinase 4	protein-coding
236688	chrX	77740251	77740930	+	0	NA	intron (NM_138270, intron 1 of 33)	L1MCb|LINE|L1	45626	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
208313	chr7	66118751	66118850	+	0	NA	intron (NM_001040648, intron 1 of 2)	MER21A|LTR|ERVL	3953	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
188469	chr5	154752821	154753280	+	0	NA	intron (NM_015315, intron 1 of 18)	intron (NM_015315, intron 1 of 18)	-2327	NM_001367718	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
126573	chr2	28749371	28749780	+	0	NA	Intergenic	Intergenic	-2173	NM_206876	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
129770	chr2	71070001	71070980	+	0	NA	intron (NM_001365466, intron 1 of 9)	intron (NM_001365466, intron 1 of 9)	1842	NM_001365466	55577		NM_017567	ENSG00000124357	NAGK	GNK|HSA242910	N-acetylglucosamine kinase	protein-coding
131314	chr2	96121921	96122480	+	0	NA	Intergenic	Intergenic	-5629	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
115042	chr19	14119721	14120650	+	0	NA	3' UTR (NM_018154, exon 4 of 4)	3' UTR (NM_018154, exon 4 of 4)	-2423	NM_002730	5566		NM_002730	ENSG00000072062	PRKACA	CAFD1|PKACA|PPNAD4	protein kinase cAMP-activated catalytic subunit alpha	protein-coding
58201	chr12	126763301	126763900	+	0	NA	intron (NR_033878, intron 1 of 4)	intron (NR_033878, intron 1 of 4)	8662	NR_033878	387895		NR_033878		LINC00944	DMDRMR	long intergenic non-protein coding RNA 944	ncRNA
223928	chr9	537021	537280	+	0	NA	intron (NM_001354332, intron 1 of 11)	intron (NM_001354332, intron 1 of 11)	32455	NM_015158	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
22382	chr1	218346821	218347450	+	0	NA	intron (NM_003238, intron 1 of 6)	CpG	-1457	NR_046268	728463		NR_046268		TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
35010	chr11	541771	543150	+	0	NA	intron (NM_198075, intron 5 of 13)	AluJb|SINE|Alu	4933	NM_198075	115399		NM_198075	ENSG00000161328	LRRC56	CILD39|DNAAF12|oda8	leucine rich repeat containing 56	protein-coding
54138	chr12	76542051	76542150	+	0	NA	intron (NM_001319652, intron 1 of 25)	AluSp|SINE|Alu	17671	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
182593	chr5	66011421	66011800	+	0	NA	intron (NM_001253697, intron 4 of 25)	AluSx1|SINE|Alu	-66037	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
123584	chr19	54462021	54462400	+	0	NA	TTS (NM_052925)	TTS (NM_052925)	1568	NM_198988	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
138384	chr2	204051421	204051680	+	0	NA	Intergenic	Intergenic	114787	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
103475	chr17	78348271	78348830	+	0	NA	Intergenic	MIRc|SINE|MIR	11117	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
137810	chr2	200175201	200175400	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-130579	NM_015535	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
86341	chr16	66478471	66480130	+	0	NA	intron (NM_001197225, intron 3 of 4)	intron (NM_001197225, intron 3 of 4)	-2898	NR_109960	101927726		NR_109960	ENSG00000261656	BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
34866	chr11	351801	352300	+	0	NA	Intergenic	AluYe6|SINE|Alu	-17449	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
115199	chr19	14469821	14471530	+	0	NA	exon (NM_213560, exon 20 of 22)	exon (NM_213560, exon 20 of 22)	4679	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
23707	chr1	231641351	231641650	+	0	NA	intron (NM_001164556, intron 1 of 4)	LTR12C|LTR|ERV1	14685	NM_001164555	27185		NM_018662	ENSG00000162946	DISC1	C1orf136|SCZD9	DISC1 scaffold protein	protein-coding
33616	chr10	119594121	119594530	+	0	NA	intron (NR_136663, intron 1 of 11)	intron (NR_136663, intron 1 of 11)	2704	NM_001323965	7073		NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
155119	chr22	37627121	37628200	+	0	NA	intron (NM_001172688, intron 12 of 17)	intron (NM_001172688, intron 12 of 17)	-12009	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
201383	chr6	145028351	145028450	+	0	NA	Intergenic	Intergenic	445252	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
236415	chrX	71253071	71253550	+	0	NA	intron (NM_001171163, intron 1 of 6)	intron (NM_001171163, intron 1 of 6)	830	NM_201599	9203		NM_005096	ENSG00000147130	ZMYM3	DXS6673E|MYM|XFIM|XLID112|ZNF198L2|ZNF261	zinc finger MYM-type containing 3	protein-coding
22518	chr1	221826901	221827330	+	0	NA	TTS (NR_125989)	TTS (NR_125989)	13551	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
54831	chr12	94941121	94942180	+	0	NA	Intergenic	Intergenic	62047	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
80043	chr16	1958851	1960290	+	0	NA	promoter-TSS (NM_004548)	promoter-TSS (NM_004548)	32	NM_004548	4716		NM_004548	ENSG00000140990	NDUFB10	MC1DN35|PDSW	NADH:ubiquinone oxidoreductase subunit B10	protein-coding
184297	chr5	96868621	96869480	+	0	NA	Intergenic	Intergenic	-6889	NM_001329229	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
50510	chr12	47819401	47821130	+	0	NA	promoter-TSS (NM_001308090)	promoter-TSS (NM_001308090)	-362	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
37575	chr11	19135451	19135630	+	0	NA	intron (NM_001001483, intron 1 of 15)	L1PA3|LINE|L1	18372	NM_019028	54503		NM_019028	ENSG00000177054	ZDHHC13	HIP14L|HIP3RP	zinc finger DHHC-type palmitoyltransferase 13	protein-coding
27729	chr10	35046021	35046280	+	0	NA	intron (NM_001324375, intron 4 of 18)	intron (NM_001324375, intron 4 of 18)	28133	NM_001198778	8453		NM_003591	ENSG00000108094	CUL2	-	cullin 2	protein-coding
95819	chr17	38750501	38751200	+	0	NA	non-coding (NR_149004, exon 1 of 1)	non-coding (NR_149004, exon 1 of 1)	1816	NR_149004	100287808		NR_149004	ENSG00000277182	LOC100287808	-	uncharacterized LOC100287808	ncRNA
91811	chr17	7046501	7048330	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-3323	NM_001370549	162515		NM_153357	ENSG00000174326	SLC16A11	MCT 11|MCT11	solute carrier family 16 member 11	protein-coding
65698	chr14	52740951	52742160	+	0	NA	intron (NM_001130701, intron 2 of 11)	AluSz|SINE|Alu	11389	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
73951	chr15	51733601	51733800	+	0	NA	intron (NM_001143917, intron 1 of 2)	MER45A|DNA|hAT-Tip100	3362	NM_001363969	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
62756	chr13	107422501	107422700	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	-101637	NR_145739	109616978		NR_145739	ENSG00000201847	SNORD31B	-	small nucleolar RNA, C/D box 31B	snoRNA
97370	chr17	43313871	43314030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13719	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
183645	chr5	80249451	80249980	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluSq2|SINE|Alu	6333	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
170987	chr3	194635051	194635350	+	0	NA	Intergenic	L1MB7|LINE|L1	-1781	NM_138399	93109		NM_138399	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
215949	chr8	8349371	8349730	+	0	NA	intron (NM_001369759, intron 3 of 5)	AluYf1|SINE|Alu	36694	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
59555	chr13	27330051	27330150	+	0	NA	Intergenic	Intergenic	58923	NM_001331126	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
92386	chr17	8251371	8251730	+	0	NA	intron (NM_012393, intron 1 of 27)	AluJo|SINE|Alu	2261	NM_012393	5198		NM_012393	ENSG00000178921	PFAS	FGAMS|FGAR-AT|FGARAT|GATD8|PURL	phosphoribosylformylglycinamidine synthase	protein-coding
204731	chr7	5560771	5560930	+	0	NA	Intergenic	Intergenic	-30249	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
138230	chr2	202768051	202768350	+	0	NA	3' UTR (NM_173511, exon 8 of 8)	3' UTR (NM_173511, exon 8 of 8)	61034	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
10217	chr1	62440101	62440580	+	0	NA	intron (NM_001017416, intron 2 of 8)	intron (NM_001017416, intron 2 of 8)	3291	NM_003368	7398		NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
139920	chr2	230762221	230762580	+	0	NA	intron (NM_016289, intron 2 of 8)	intron (NM_016289, intron 2 of 8)	48852	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
26521	chr10	21489251	21489350	+	0	NA	Intergenic	AluJb|SINE|Alu	7341	NR_031736	100302129		NR_031736	ENSG00000222071	MIR1915	MIRN1915|hsa-mir-1915	microRNA 1915	ncRNA
91118	chr17	3684971	3685130	+	0	NA	intron (NM_002561, intron 9 of 11)	AluSp|SINE|Alu	11105	NM_001204519	5026		NM_002561	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X 5	protein-coding
132361	chr2	105755751	105756600	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	11112	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
164427	chr3	59049371	59050630	+	0	NA	promoter-TSS (NM_001351530)	promoter-TSS (NM_001351530)	25	NR_147234	200844		NM_198463	ENSG00000163689	CFAP20DC	C3orf67	CFAP20 domain containing	protein-coding
103562	chr17	78675601	78676100	+	0	NA	3' UTR (NM_001365037, exon 14 of 14)	3' UTR (NM_001365037, exon 14 of 14)	41182	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
212630	chr7	129373571	129373730	+	0	NA	intron (NM_001130723, intron 1 of 16)	intron (NM_001130723, intron 1 of 16)	-2188	NM_001130722	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
49513	chr12	25376951	25378100	+	0	NA	Intergenic	Intergenic	-126596	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
84943	chr16	31352021	31352280	+	0	NA	Intergenic	Intergenic	-3026	NM_001286375	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
85038	chr16	31716121	31716580	+	0	NA	intron (NM_001130913, intron 1 of 4)	intron (NM_001130913, intron 1 of 4)	3121	NM_001130913	124411		NM_001004300	ENSG00000197302	KRBOX5	ZNF720	KRAB box domain containing 5	protein-coding
233778	chrX	1429951	1430630	+	0	NA	intron (NM_001173473, intron 6 of 12).2	AluSx1|SINE|Alu	22619	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
112136	chr19	5609251	5609350	+	0	NA	intron (NM_014649, intron 9 of 20)	AluSx|SINE|Alu	13476	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
18904	chr1	168347921	168348800	+	0	NA	Intergenic	L1PA16|LINE|L1	-27164	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
203251	chr6	169253721	169253980	+	0	NA	promoter-TSS (NM_001381939)	promoter-TSS (NM_001381939)	-4	NR_167745	7058		NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding
106718	chr18	23483471	23483630	+	0	NA	TTS (NM_003831)	TTS (NM_003831)	-19920	NM_001276342	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
26670	chr10	22615701	22616500	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	98008	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
11845	chr1	92961001	92962000	+	0	NA	promoter-TSS (NM_001252273)	promoter-TSS (NM_001252273)	22	NM_001252269	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
114260	chr19	11554151	11554450	+	0	NA	exon (NM_001363675, exon 4 of 6)	exon (NM_001363675, exon 4 of 6)	1167	NM_001363673	84337		NM_032377	ENSG00000130165	ELOF1	ELF1	elongation factor 1	protein-coding
94551	chr17	29594121	29595150	+	0	NA	intron (NM_152345, intron 1 of 14)	intron (NM_152345, intron 1 of 14)	1503	NM_152345	124930		NM_152345	ENSG00000198720	ANKRD13B	-	ankyrin repeat domain 13B	protein-coding
104052	chr17	80143851	80144260	+	0	NA	intron (NM_014740, intron 2 of 11)	intron (NM_014740, intron 2 of 11)	3073	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
46143	chr11	123046601	123046800	+	0	NA	Intergenic	L2c|LINE|L2	11456	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
122911	chr19	50608071	50608780	+	0	NA	Intergenic	Intergenic	3462	NR_004384	100126781		NR_004384		SNAR-F	-	small NF90 (ILF3) associated RNA F	snRNA
108912	chr18	79435821	79436380	+	0	NA	intron (NM_172389, intron 3 of 9)	intron (NM_172389, intron 3 of 9)	35801	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
231284	chr9	130027971	130028800	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	14804	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
207535	chr7	44820771	44821980	+	0	NA	Intergenic	Intergenic	24694	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
105208	chr17	82324971	82325950	+	0	NA	intron (NM_003004, intron 2 of 4)	MLT2F|LTR|ERVL	-7852	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
17561	chr1	156810771	156811650	+	0	NA	intron (NM_001161444, intron 5 of 7)	L2|LINE|L2	-4540	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
171853	chr4	715071	715800	+	0	NA	intron (NM_001317836, intron 1 of 11)	intron (NM_001317836, intron 1 of 11)	9603	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
108283	chr18	63309171	63310300	+	0	NA	intron (NM_000633, intron 2 of 2)	MER2B|DNA|TcMar-Tigger	10034	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
4974	chr1	24187131	24188150	+	0	NA	promoter-TSS (NM_173064)	promoter-TSS (NM_173064)	-351	NM_170743	163702		NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	interferon lambda receptor 1	protein-coding
101982	chr17	74754021	74754430	+	0	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	5597	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
111805	chr19	4459271	4459600	+	0	NA	Intergenic	AluJr|SINE|Alu	-1641	NM_025241	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
152694	chr22	21627671	21627830	+	0	NA	TTS (NM_001017964)	TTS (NM_001017964)	2272	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
112614	chr19	6745271	6745430	+	0	NA	intron (NM_001288963, intron 9 of 13)	intron (NM_001288963, intron 9 of 13)	5670	NM_001288963	9322		NM_004240	ENSG00000125733	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
101213	chr17	65560601	65562350	+	0	NA	5' UTR (NM_001363813, exon 1 of 10)	5' UTR (NM_001363813, exon 1 of 10)	173	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
82204	chr16	14985371	14985680	+	0	NA	intron (NM_001285448, intron 2 of 21)	AluY|SINE|Alu	10499	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
175725	chr4	77593901	77594530	+	0	NA	intron (NM_006419, intron 1 of 4)	intron (NM_006419, intron 1 of 4)	-11605	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
238214	chrX	139795201	139795480	+	0	NA	intron (NM_173694, intron 12 of 29)	intron (NM_173694, intron 12 of 29)	36901	NM_001010986	286410		NM_173694	ENSG00000101974	ATP11C	ATPIG|ATPIQ|HACXL	ATPase phospholipid transporting 11C	protein-coding
89882	chr16	89651621	89652080	+	0	NA	intron (NM_001083314, intron 1 of 5)	intron (NM_001083314, intron 1 of 5)	5858	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
17292	chr1	156438851	156439430	+	0	NA	Intergenic	Intergenic	-9592	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
218503	chr8	52760421	52760750	+	0	NA	Intergenic	LTR57-int|LTR|ERVL	-46119	NM_001083617	9821		NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
197757	chr6	87210901	87211100	+	0	NA	intron (NM_015021, intron 1 of 7)	Charlie8|DNA|hAT-Charlie	55435	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
172828	chr4	3121971	3122330	+	0	NA	intron (NM_002111, intron 9 of 66)	intron (NM_002111, intron 9 of 66)	47469	NM_002111	3064		NM_002111	ENSG00000197386	HTT	HD|IT15|LOMARS	huntingtin	protein-coding
16769	chr1	155421501	155421700	+	0	NA	intron (NM_018489, intron 5 of 27)	AluY|SINE|Alu	-11580	NR_034180	645682		NR_034180	ENSG00000237872	POU5F1P4	OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1	POU class 5 homeobox 1 pseudogene 4	pseudo
169450	chr3	167691001	167691770	+	0	NA	intron (NM_007217, intron 6 of 8)	intron (NM_007217, intron 6 of 8)	-33462	NM_001348951	151790		NM_178824	ENSG00000174776	WDR49	-	WD repeat domain 49	protein-coding
215588	chr7	158858771	158859130	+	0	NA	intron (NM_001350917, intron 1 of 25)	(TCCCC)n|Simple_repeat|Simple_repeat	2392	NM_001350917	55112		NM_018051	ENSG00000126870	DYNC2I1	CFAP163|DIC6|FAP163|SRPS6|SRTD8|WDR60	dynein 2 intermediate chain 1	protein-coding
42501	chr11	70262151	70262530	+	0	NA	Intergenic	AluYe5|SINE|Alu	-8350	NM_001378006	8500		NM_003626	ENSG00000131626	PPFIA1	LIP.1|LIP1|LIPRIN	PTPRF interacting protein alpha 1	protein-coding
76067	chr15	72373851	72374330	+	0	NA	intron (NM_001318825, intron 1 of 13)	intron (NM_001318825, intron 1 of 13)	1924	NR_134869	3073		NM_000520	ENSG00000213614	HEXA	TSD	hexosaminidase subunit alpha	protein-coding
231330	chr9	130166971	130167280	+	0	NA	Intergenic	L2|LINE|L2	-5279	NM_014286	23413		NM_014286	ENSG00000107130	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
196147	chr6	42445251	42445850	+	0	NA	intron (NM_033502, intron 2 of 17)	L2a|LINE|L2	6501	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
184122	chr5	94577671	94578750	+	0	NA	intron (NM_001385723, intron 1 of 4)	MIR|SINE|MIR	39915	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
111661	chr19	4233121	4233730	+	0	NA	intron (NM_005755, intron 3 of 4)	L2a|LINE|L2	3902	NM_005755	10148		NM_005755	ENSG00000105246	EBI3	IL-27B|IL27B|IL35B	Epstein-Barr virus induced 3	protein-coding
66263	chr14	61363201	61363700	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	42007	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
126240	chr2	27070201	27070400	+	0	NA	TTS (NM_001134693)	TTS (NM_001134693)	1354	NM_001134693	100128731		NM_001134693	ENSG00000228474	OST4	-	oligosaccharyltransferase complex subunit 4, non-catalytic	protein-coding
67466	chr14	70884451	70884950	+	0	NA	Intergenic	Intergenic	-22759	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
125621	chr2	19351031	19351250	+	0	NA	TTS (NM_145260)	TTS (NM_145260)	2711	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
9086	chr1	45002871	45003030	+	0	NA	3' UTR (NM_024602, exon 21 of 21)	3' UTR (NM_024602, exon 21 of 21)	8374	NM_024602	79654		NM_024602	ENSG00000126107	HECTD3	-	HECT domain E3 ubiquitin protein ligase 3	protein-coding
134957	chr2	151830001	151830400	+	0	NA	Intergenic	L1MEc|LINE|L1	-1779	NM_001037174	26225		NM_012097	ENSG00000162980	ARL5A	ARFLP5|ARL5	ADP ribosylation factor like GTPase 5A	protein-coding
208019	chr7	55571421	55571800	+	0	NA	intron (NM_001321244, intron 1 of 5)	CpG	258	NM_001321250	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
138017	chr2	201273351	201274200	+	0	NA	intron (NM_033358, intron 6 of 7)	AluJo|SINE|Alu	13239	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
204959	chr7	6367001	6367200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7427	NM_006908	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
148599	chr21	5119401	5119980	+	0	NA	TTS (NM_001320384)	TTS (NM_001320384)	8679	NM_001363761	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
44485	chr11	105054701	105055030	+	0	NA	Intergenic	Intergenic	-9530	NM_001017534	114769		NM_052889	ENSG00000204397	CARD16	COP|COP1|LLID-114769|PSEUDO-ICE	caspase recruitment domain family member 16	protein-coding
77114	chr15	78939201	78940180	+	0	NA	intron (NM_001319137, intron 1 of 12)	AluSx|SINE|Alu	5356	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
189285	chr5	172107951	172108050	+	0	NA	intron (NM_005990, intron 4 of 18)	L1M5|LINE|L1	80224	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
99835	chr17	55265721	55266980	+	0	NA	intron (NM_001330375, intron 1 of 3)	intron (NM_001330375, intron 1 of 3)	128	NM_001330375	3131		NM_002126	ENSG00000108924	HLF	-	HLF transcription factor, PAR bZIP family member	protein-coding
57784	chr12	123063351	123063980	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-17719	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
53586	chr12	67804021	67804480	+	0	NA	Intergenic	Intergenic	-74775	NR_110063	101927901		NR_110063	ENSG00000255970	LINC02421	-	long intergenic non-protein coding RNA 2421	ncRNA
21074	chr1	203307301	203308000	+	0	NA	3' UTR (NM_006763, exon 2 of 2)	3' UTR (NM_006763, exon 2 of 2)	2131	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
98608	chr17	47752451	47752750	+	0	NA	Intergenic	AluJo|SINE|Alu	19364	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
201089	chr6	142818451	142818550	+	0	NA	intron (NM_006734, intron 2 of 9)	AluSz|SINE|Alu	126676	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
112713	chr19	7188651	7189250	+	0	NA	intron (NM_001079817, intron 2 of 20)	intron (NM_001079817, intron 2 of 20)	105464	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
152793	chr22	21823951	21825330	+	0	NA	intron (NM_138957, intron 1 of 7)	L1ME1|LINE|L1	43005	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
131087	chr2	89048451	89048550	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	236130	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
121964	chr19	48482351	48482850	+	0	NA	TTS (NM_004228)	TTS (NM_004228)	13231	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
30680	chr10	80505171	80505900	+	0	NA	intron (NM_001351269, intron 3 of 8)	intron (NM_001351269, intron 3 of 8)	30407	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
142463	chr20	4082421	4083480	+	0	NA	Intergenic	L1MB5|LINE|L1	-65829	NM_001270691	54498		NM_019025	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
16538	chr1	154951961	154953070	+	0	NA	intron (NM_020524, intron 2 of 10)	intron (NM_020524, intron 2 of 10)	3584	NM_020524	57326		NM_020524	ENSG00000163346	PBXIP1	HPIP	PBX homeobox interacting protein 1	protein-coding
115924	chr19	16619051	16619150	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	9104	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
237834	chrX	130081721	130083030	+	0	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	28122	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
177476	chr4	113781501	113782000	+	0	NA	Intergenic	Intergenic	-19823	NM_172114	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
204609	chr7	5357121	5357380	+	0	NA	exon (NM_001080495, exon 16 of 30)	exon (NM_001080495, exon 16 of 30)	66296	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
134607	chr2	144380801	144381200	+	0	NA	Intergenic	L2a|LINE|L2	-47931	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
61398	chr13	51614021	51614860	+	0	NA	intron (NM_052950, intron 1 of 11)	MLT1J|LTR|ERVL-MaLR	29978	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
79560	chr16	976171	976900	+	0	NA	non-coding (NR_036442, exon 4 of 4)	non-coding (NR_036442, exon 4 of 4)	5078	NR_164339	115804232		NR_036442	ENSG00000260807	CEROX1	-	cytoplasmic endogenous regulator of oxidative phosphorylation 1	ncRNA
164902	chr3	71120221	71120480	+	0	NA	intron (NM_001244810, intron 6 of 20)	LFSINE_Vert|SINE|tRNA	10236	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
183308	chr5	76624871	76625030	+	0	NA	intron (NM_001285462, intron 2 of 23)	AluSx1|SINE|Alu	-1547	NM_004101	2151		NM_004101	ENSG00000164220	F2RL2	PAR-3|PAR3	coagulation factor II thrombin receptor like 2	protein-coding
102150	chr17	75108051	75108350	+	0	NA	Intergenic	Intergenic	-1769	NM_001304272	79637		NM_024585	ENSG00000125449	ARMC7	-	armadillo repeat containing 7	protein-coding
39243	chr11	57670551	57671000	+	0	NA	intron (NM_015457, intron 1 of 11)	intron (NM_015457, intron 1 of 11)	2661	NM_015457	25921		NM_015457	ENSG00000156599	ZDHHC5	DHHC5|ZNF375	zinc finger DHHC-type palmitoyltransferase 5	protein-coding
202656	chr6	158776721	158777180	+	0	NA	intron (NM_003379, intron 6 of 12)	intron (NM_003379, intron 6 of 12)	-12197	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
172	chr1	627821	628450	+	0	NA	non-coding (NR_125957, exon 2 of 3)	non-coding (NR_125957, exon 2 of 3)	874	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
149984	chr21	36708001	36708400	+	0	NA	intron (NM_005069, intron 1 of 10)	CpG	9085	NM_009586	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
173051	chr4	5708021	5708550	+	0	NA	intron (NM_001166136, intron 1 of 21)	CpG	274	NM_147127	132884		NM_147127	ENSG00000173040	EVC2	LBN|WAD	EvC ciliary complex subunit 2	protein-coding
79595	chr16	1046501	1046700	+	0	NA	Intergenic	Intergenic	-26156	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
23219	chr1	227729451	227729800	+	0	NA	intron (NR_136654, intron 1 of 3)	intron (NR_136654, intron 1 of 3)	1107	NR_136654	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
177765	chr4	122701151	122701630	+	0	NA	Intergenic	Intergenic	31068	NR_024041	729338		NR_024041		CETN4P	-	centrin 4, pseudogene	pseudo
135745	chr2	169560901	169561450	+	0	NA	intron (NM_001322048, intron 3 of 13)	AluSz|SINE|Alu	12690	NM_024622	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
164652	chr3	66498621	66498980	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	1254	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
88622	chr16	85619471	85619630	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	6228	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
53991	chr12	75334271	75334850	+	0	NA	promoter-TSS (NM_152779)	promoter-TSS (NM_152779)	-110	NM_001304964	256710		NM_152779	ENSG00000173401	GLIPR1L1	ALKN2972|PRO7434	GLIPR1 like 1	protein-coding
35147	chr11	729071	729230	+	0	NA	Intergenic	Intergenic	-18314	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
120962	chr19	45705371	45705930	+	0	NA	Intergenic	AluSc8|SINE|Alu	9628	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
127805	chr2	44431971	44432130	+	0	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	70103	NM_024766	79823		NM_024766	ENSG00000143919	CAMKMT	C2orf34|CLNMT|CaM KMT|Cam|KMT	calmodulin-lysine N-methyltransferase	protein-coding
74907	chr15	63612801	63613200	+	0	NA	intron (NM_003922, intron 76 of 77)	intron (NM_003922, intron 76 of 77)	-12173	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
103798	chr17	79074521	79076400	+	0	NA	intron (NM_001042573, intron 1 of 13)	intron (NM_001042573, intron 1 of 13)	636	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
202906	chr6	160028351	160028750	+	0	NA	intron (NM_000876, intron 6 of 47)	intron (NM_000876, intron 6 of 47)	-20886	NR_047514	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
36314	chr11	3859171	3859950	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	3498	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
226400	chr9	70409201	70409400	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	5357	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
52307	chr12	54759771	54759930	+	0	NA	Intergenic	L1MA4|LINE|L1	-94666	NM_058173	118430		NM_058173	ENSG00000172551	MUCL1	SBEM	mucin like 1	protein-coding
127661	chr2	43167101	43167300	+	0	NA	Intergenic	AluJb|SINE|Alu	59406	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
179668	chr4	190014751	190015650	+	0	NA	Intergenic	CpG	12056	NM_001005217	448831		NM_001005217	ENSG00000205097	FRG2	FRG2A	FSHD region gene 2	protein-coding
230913	chr9	129291151	129291450	+	0	NA	Intergenic	Intergenic	8884	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
182020	chr5	55411971	55412130	+	0	NA	intron (NM_015360, intron 23 of 26)	intron (NM_015360, intron 23 of 26)	96876	NR_049869	100847019		NR_049869	ENSG00000265135	MIR5687	-	microRNA 5687	ncRNA
95484	chr17	36211721	36212280	+	0	NA	3' UTR (NM_001291470, exon 2 of 2).2	3' UTR (NM_001291470, exon 2 of 2).2	937	NR_111970	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
158321	chr22	50435421	50435950	+	0	NA	intron (NM_001351641, intron 13 of 23)	intron (NM_001351641, intron 13 of 23)	28243	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
200528	chr6	136246051	136246450	+	0	NA	intron (NM_138419, intron 2 of 7)	intron (NM_138419, intron 2 of 7)	4061	NM_001318738	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
230282	chr9	127934301	127934930	+	0	NA	TTS (NM_003863)	TTS (NM_003863)	3239	NR_165632	8818		NM_003863	ENSG00000136908	DPM2	CDG1U	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein-coding
24751	chr1	248807001	248807430	+	0	NA	Intergenic	Intergenic	18151	NM_001322463	80851		NM_030645	ENSG00000175137	SH3BP5L	-	SH3 binding domain protein 5 like	protein-coding
13294	chr1	113072601	113074080	+	0	NA	promoter-TSS (NR_103777)	promoter-TSS (NR_103777)	142	NM_014813	9860		NM_014813	ENSG00000198799	LRIG2	LIG-2|LIG2|UFS2	leucine rich repeats and immunoglobulin like domains 2	protein-coding
124103	chr19	55652371	55652730	+	0	NA	exon (NM_001370471, exon 4 of 4)	exon (NM_001370471, exon 4 of 4)	-2485	NM_007279	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
146969	chr20	52539971	52540230	+	0	NA	Intergenic	Intergenic	-80738	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
237050	chrX	103282921	103283050	+	0	NA	Intergenic	L1PA4|LINE|L1	-6235	NM_001012979	340543		NM_001012979	ENSG00000204065	TCEAL5	WEX4	transcription elongation factor A like 5	protein-coding
132848	chr2	110852051	110853040	+	0	NA	intron (NM_001371254, intron 10 of 18)	intron (NM_001371254, intron 10 of 18)	119972	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
85255	chr16	48471571	48471730	+	0	NA	Intergenic	Intergenic	-86237	NM_003031	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
236326	chrX	69158471	69158780	+	0	NA	Intergenic	Intergenic	6828	NM_145119	64219		NM_022368	ENSG00000181191	PJA1	PRAJA1|RNF70	praja ring finger ubiquitin ligase 1	protein-coding
117964	chr19	33298701	33298900	+	0	NA	Intergenic	Intergenic	3734	NM_004364	1050		NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	CCAAT enhancer binding protein alpha	protein-coding
160163	chr3	21988601	21988800	+	0	NA	Intergenic	L1PA2|LINE|L1	31561	NR_046876	100874221		NR_046876	ENSG00000223351	ZNF385D-AS2	-	ZNF385D antisense RNA 2	ncRNA
10709	chr1	75722471	75722630	+	0	NA	Intergenic	LTR3B_|LTR|ERVK	-1797	NM_001286043	34		NM_000016	ENSG00000117054	ACADM	ACAD1|MCAD|MCADH	acyl-CoA dehydrogenase medium chain	protein-coding
100984	chr17	64599221	64600100	+	0	NA	intron (NM_022739, intron 2 of 18)	MER1B|DNA|hAT-Charlie	62647	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
45430	chr11	118403321	118403600	+	0	NA	intron (NM_006476, intron 1 of 2)	AluSz|SINE|Alu	1854	NM_006476	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
220069	chr8	93922901	93923630	+	0	NA	exon (NM_018444, exon 2 of 2)	exon (NM_018444, exon 2 of 2)	6318	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
115177	chr19	14430801	14431000	+	0	NA	Intergenic	L2|LINE|L2	-2406	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
59448	chr13	25900871	25901030	+	0	NA	intron (NM_016529, intron 33 of 36)	intron (NM_016529, intron 33 of 36)	151066	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
233495	chr9	138147671	138148180	+	0	NA	Intergenic	CpG	-2188	NR_027156	643224		NR_027156		TUBBP5	-	tubulin beta pseudogene 5	pseudo
148320	chr20	63747701	63747900	+	0	NA	intron (NM_025224, intron 4 of 4)	intron (NM_025224, intron 4 of 4)	8024	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
86649	chr16	67455221	67455750	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	24364	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
70007	chr14	100072621	100073080	+	0	NA	intron (NM_016337, intron 1 of 13)	intron (NM_016337, intron 1 of 13)	7428	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
192500	chr6	24996501	24996780	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	45648	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
60203	chr13	40438221	40438480	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	42656	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
12975	chr1	110895801	110896750	+	0	NA	intron (NM_001040033, intron 6 of 8)	L1MC5a|LINE|L1	23127	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
73112	chr15	41132171	41132430	+	0	NA	Intergenic	Intergenic	-16020	NM_017553	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
9680	chr1	52870301	52870450	+	0	NA	intron (NM_001307931, intron 7 of 12)	SVA_D|Retroposon|SVA	27615	NM_001004339	440590		NM_001004339	ENSG00000203995	ZYG11A	ZYG11	zyg-11 family member A, cell cycle regulator	protein-coding
14418	chr1	144323651	144324300	+	0	NA	Intergenic	CpG	-10037	NR_160535	105371215		NR_160535		LOC105371215	-	uncharacterized LOC105371215	ncRNA
53782	chr12	68821571	68821930	+	0	NA	intron (NM_001145339, intron 5 of 8)	intron (NM_001145339, intron 5 of 8)	12726	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
184279	chr5	96781721	96781980	+	0	NA	exon (NM_001040458, exon 16 of 19)	exon (NM_001040458, exon 16 of 19)	26095	NM_001040458	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
205448	chr7	17118421	17118780	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-180052	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
178219	chr4	142698501	142699300	+	0	NA	intron (NM_001385336, intron 2 of 26)	MER76|LTR|ERVL	-138145	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
179696	chr4	190115051	190115550	+	0	NA	Intergenic	MER92-int|LTR|ERV1	50071	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
198734	chr6	108492171	108492430	+	0	NA	intron (NM_001323005, intron 10 of 11)	intron (NM_001323005, intron 10 of 11)	-67525	NM_201559	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
222065	chr8	130318271	130319200	+	0	NA	intron (NM_001362924, intron 3 of 30)	MIRb|SINE|MIR	-22202	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
108859	chr18	79368401	79368930	+	0	NA	intron (NM_198531, intron 26 of 29)	intron (NM_198531, intron 26 of 29)	-27265	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
40459	chr11	64219221	64219750	+	0	NA	intron (NM_001382363, intron 6 of 13)	intron (NM_001382363, intron 6 of 13)	6384	NM_001160393	83707		NM_031472	ENSG00000149743	TRPT1	-	tRNA phosphotransferase 1	protein-coding
238857	chrX	154485621	154487280	+	0	NA	TTS (NM_001142391)	TTS (NM_001142391)	165	NM_014235	8266		NM_014235	ENSG00000102178	UBL4A	DX254E|DXS254E|G6PD|GDX|GET5|MDY2|TMA24|UBL4	ubiquitin like 4A	protein-coding
148577	chr21	5042551	5042950	+	0	NA	Intergenic	AluSx1|SINE|Alu	20196	NM_001283050	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
171289	chr3	195907701	195908700	+	0	NA	non-coding (NR_145450, exon 1 of 2)	non-coding (NR_145450, exon 1 of 2)	124	NR_145450	100128262		NR_145450		TNK2-AS1	-	TNK2 antisense RNA 1	ncRNA
88275	chr16	83500451	83500550	+	0	NA	intron (NM_001220490, intron 6 of 12)	(CTC)n|Simple_repeat|Simple_repeat	-7846	NR_036147	100422853		NR_036147	ENSG00000263785	MIR3182	mir-3182	microRNA 3182	ncRNA
16947	chr1	155925001	155925400	+	0	NA	TTS (NR_003005)	TTS (NR_003005)	886	NR_003005	677771		NR_003005	ENSG00000281394	SCARNA4	ACA26	small Cajal body-specific RNA 4	ncRNA
196072	chr6	42236471	42236830	+	0	NA	intron (NM_033502, intron 15 of 17)	intron (NM_033502, intron 15 of 17)	-18789	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
220363	chr8	99838001	99838250	+	0	NA	intron (NM_152564, intron 54 of 61)	intron (NM_152564, intron 54 of 61)	55582	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
96721	chr17	41650771	41651200	+	0	NA	Intergenic	Intergenic	-10786	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
74336	chr15	58518651	58518950	+	0	NA	intron (NM_000236, intron 1 of 8)	L1ME3|LINE|L1	-20065	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
154126	chr22	31159601	31160880	+	0	NA	promoter-TSS (NM_152267)	promoter-TSS (NM_152267)	58	NM_152267	91445		NM_152267	ENSG00000138942	RNF185	-	ring finger protein 185	protein-coding
198633	chr6	107788601	107789400	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	35313	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
162816	chr3	49132151	49132850	+	0	NA	exon (NM_002292, exon 2 of 32)	exon (NM_002292, exon 2 of 32)	550	NM_002292	3913		NM_002292	ENSG00000172037	LAMB2	LAMS|NPHS5|PIERS	laminin subunit beta 2	protein-coding
177839	chr4	127782401	127782800	+	0	NA	promoter-TSS (NM_001317382)	promoter-TSS (NM_001317382)	278	NM_001317383	22824		NM_014278	ENSG00000164070	HSPA4L	APG-1|APG1|HSPH3|Osp94	heat shock protein family A (Hsp70) member 4 like	protein-coding
130312	chr2	84958001	84958400	+	0	NA	Intergenic	Intergenic	-12961	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
52936	chr12	57432221	57432630	+	0	NA	Intergenic	Intergenic	-1382	NM_001351207	22864		NM_014925	ENSG00000179912	R3HDM2	CAG6|PR01365	R3H domain containing 2	protein-coding
162531	chr3	48609021	48610480	+	0	NA	promoter-TSS (NM_003365)	promoter-TSS (NM_003365)	-104	NM_003365	7384		NM_003365	ENSG00000010256	UQCRC1	D3S3191|PKNPY|QCR1|UQCR1	ubiquinol-cytochrome c reductase core protein 1	protein-coding
61156	chr13	48858051	48858550	+	0	NA	Intergenic	Intergenic	-117612	NM_001079673	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
32961	chr10	110455301	110456080	+	0	NA	Intergenic	Intergenic	-42217	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
183971	chr5	88684721	88685600	+	0	NA	promoter-TSS (NR_015436)	promoter-TSS (NR_015436)	-335	NR_152234	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
62552	chr13	99861671	99861830	+	0	NA	intron (NM_206808, intron 3 of 8)	intron (NM_206808, intron 3 of 8)	95415	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
174561	chr4	40221251	40222030	+	0	NA	intron (NM_001278360, intron 2 of 3)	Tigger1|DNA|TcMar-Tigger	24609	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
190881	chr6	2448871	2449130	+	0	NA	Intergenic	Intergenic	-185500	NR_149119	105374885		NR_149118		LINC02521	-	long intergenic non-protein coding RNA 2521	ncRNA
97529	chr17	44005711	44006100	+	0	NA	exon (NM_153006, exon 2 of 7)	exon (NM_153006, exon 2 of 7)	1283	NM_153006	162417		NM_153006	ENSG00000161653	NAGS	AGAS|ARGA	N-acetylglutamate synthase	protein-coding
6028	chr1	27108801	27109400	+	0	NA	intron (NR_046474, intron 2 of 10)	intron (NR_046474, intron 2 of 10)	46025	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
28033	chr10	43228401	43230120	+	0	NA	intron (NM_145313, intron 1 of 12)	CpG	479	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
179940	chr5	772251	772980	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	12114	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
103766	chr17	78981101	78981300	+	0	NA	Intergenic	Intergenic	-1277	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
204812	chr7	5677801	5678680	+	0	NA	intron (NR_046834, intron 1 of 2)	intron (NR_046834, intron 1 of 2)	2221	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
62044	chr13	91312401	91312600	+	0	NA	Intergenic	Intergenic	-35320	NR_027349	407975		NM_213723	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA
118470	chr19	35893401	35893600	+	0	NA	intron (NM_001365706, intron 9 of 9)	L1MC5|LINE|L1	6237	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
93507	chr17	19000901	19001300	+	0	NA	intron (NM_001039999, intron 2 of 5)	MIRc|SINE|MIR	3664	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
214458	chr7	150325301	150325750	+	0	NA	intron (NM_023942, intron 1 of 1)	AluJb|SINE|Alu	-1856	NM_001164458	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
96883	chr17	42105521	42105980	+	0	NA	exon (NM_024119, exon 9 of 14)	exon (NM_024119, exon 9 of 14)	6964	NM_024119	79132		NM_024119	ENSG00000108771	DHX58	D11LGP2|D11lgp2e|LGP2|RLR-3	DExH-box helicase 58	protein-coding
92718	chr17	14203451	14204930	+	0	NA	intron (NM_001303, intron 6 of 6)	intron (NM_001303, intron 6 of 6)	32672	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
106273	chr18	12419701	12420980	+	0	NA	exon (NM_001142405, exon 2 of 7)	exon (NM_001142405, exon 2 of 7)	151	NM_001142406	10650		NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
37603	chr11	19951521	19951850	+	0	NA	intron (NM_145117, intron 10 of 37)	intron (NM_145117, intron 10 of 37)	-70871	NM_001111019	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
184246	chr5	96671471	96671830	+	0	NA	intron (NM_001375317, intron 1 of 30)	MIRb|SINE|MIR	8625	NM_001330629	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
226622	chr9	73175771	73175930	+	0	NA	Intergenic	AluSq|SINE|Alu	23985	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
233213	chr9	137229151	137229680	+	0	NA	3' UTR (NM_001190228, exon 3 of 3)	3' UTR (NM_001190228, exon 3 of 3)	-1342	NM_001177317	142680		NM_080877	ENSG00000198569	SLC34A3	HHRH|NPT2C|NPTIIc	solute carrier family 34 member 3	protein-coding
167731	chr3	131174671	131175080	+	0	NA	3' UTR (NM_145910, exon 15 of 15)	3' UTR (NM_145910, exon 15 of 15)	147147	NM_001321223	79858		NM_024800	ENSG00000114670	NEK11	-	NIMA related kinase 11	protein-coding
194889	chr6	34676021	34676800	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-19744	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
189102	chr5	170313401	170314450	+	0	NA	Intergenic	L1ME4a|LINE|L1	-1209	NR_147701	100128059		NR_147701	ENSG00000250274	LOC100128059	-	uncharacterized LOC100128059	ncRNA
143481	chr20	31063951	31064250	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-193564	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
170680	chr3	187744511	187745970	+	0	NA	intron (NM_001706, intron 1 of 9)	intron (NM_001706, intron 1 of 9)	228	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
137429	chr2	196639001	196640230	+	0	NA	promoter-TSS (NM_001080539)	promoter-TSS (NM_001080539)	-100	NM_001353339	284992		NM_173466	ENSG00000144395	CCDC150	-	coiled-coil domain containing 150	protein-coding
233982	chrX	2709951	2711430	+	0	NA	intron (NR_135623, intron 1 of 10)	intron (NR_135623, intron 1 of 10)	19395	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
207427	chr7	44489621	44491180	+	0	NA	intron (NM_015332, intron 1 of 5)	CpG	258	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
139627	chr2	225463901	225464100	+	0	NA	intron (NM_001371273, intron 3 of 7)	intron (NM_001371273, intron 3 of 7)	63114	NM_020864	57624		NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding
51217	chr12	50620171	50620930	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	115565	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
117132	chr19	19272771	19273730	+	0	NA	promoter-TSS (NM_001001524)	promoter-TSS (NM_001001524)	51	NM_001001524	53345		NM_203510	ENSG00000213996	TM6SF2	-	transmembrane 6 superfamily member 2	protein-coding
209629	chr7	77727471	77727630	+	0	NA	intron (NM_198467, intron 1 of 7)	AluSz6|SINE|Alu	-30205	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
181991	chr5	55224821	55225080	+	0	NA	intron (NM_001190787, intron 3 of 6)	AluJb|SINE|Alu	2365	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
103284	chr17	77809951	77810130	+	0	NA	Intergenic	(TGATGA)n|Simple_repeat|Simple_repeat	74047	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
196168	chr6	42563551	42564890	+	0	NA	5' UTR (NM_001184801, exon 1 of 12)	5' UTR (NM_001184801, exon 1 of 12)	191	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
153480	chr22	26294351	26294850	+	0	NA	intron (NM_001184775, intron 3 of 15)	intron (NM_001184775, intron 3 of 15)	125126	NM_001184775	23544		NM_021115	ENSG00000100095	SEZ6L	SEZ6L1	seizure related 6 homolog like	protein-coding
190387	chr5	179791271	179791430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2636	NM_145867	4056		NM_000897	ENSG00000213316	LTC4S	-	leukotriene C4 synthase	protein-coding
84984	chr16	31456721	31457300	+	0	NA	Intergenic	Intergenic	-1294	NM_001288767	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
170569	chr3	186805771	186808080	+	0	NA	promoter-TSS (NM_181573)	promoter-TSS (NM_181573)	-230	NM_181573	5984		NM_002916	ENSG00000163918	RFC4	A1|RFC37	replication factor C subunit 4	protein-coding
9037	chr1	44786051	44788750	+	0	NA	exon (NM_153274, exon 2 of 9)	exon (NM_153274, exon 2 of 9)	770	NM_153274	266675		NM_153274	ENSG00000142959	BEST4	VMD2L2	bestrophin 4	protein-coding
2541	chr1	9726571	9726930	+	0	NA	intron (NM_001350234, intron 23 of 23)	intron (NM_001350234, intron 23 of 23)	35283	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
212937	chr7	130933021	130933580	+	0	NA	Intergenic	L2b|LINE|L2	19836	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
25997	chr10	12067171	12067680	+	0	NA	Intergenic	L2c|LINE|L2	-1529	NM_018706	55526		NM_018706	ENSG00000181192	DHTKD1	AAKAD|AMOXAD|CMT2Q|E1a|OADC-E1|OADH-E1	dehydrogenase E1 and transketolase domain containing 1	protein-coding
147021	chr20	53591321	53592090	+	0	NA	intron (NM_006526, intron 1 of 5)	intron (NM_006526, intron 1 of 5)	2134	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
156356	chr22	40949601	40949830	+	0	NA	Intergenic	AluSx|SINE|Alu	-1663	NM_014248	9978		NM_014248	ENSG00000100387	RBX1	BA554C12.1|RNF75|ROC1	ring-box 1	protein-coding
172104	chr4	1072921	1073450	+	0	NA	non-coding (NR_159502, exon 7 of 7)	non-coding (NR_159502, exon 7 of 7)	40379	NR_159498	285498		NM_194439	ENSG00000178222	RNF212	SPGF62|ZHP3	ring finger protein 212	protein-coding
203087	chr6	166342301	166343350	+	0	NA	promoter-TSS (NR_130112)	promoter-TSS (NR_130112)	194	NR_040022	100289495		NR_040022	ENSG00000286760	LOC100289495	-	uncharacterized LOC100289495	ncRNA
61028	chr13	48184821	48185080	+	0	NA	Intergenic	Intergenic	-48256	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
158545	chr3	4271871	4272030	+	0	NA	Intergenic	Intergenic	-31354	NM_001276325	6419		NM_006515	ENSG00000170364	SETMAR	METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
133089	chr2	112541621	112543430	+	0	NA	promoter-TSS (NM_001137604)	promoter-TSS (NM_001137604)	60	NM_001371970	84172		NM_019014	ENSG00000125630	POLR1B	A135|RPA135|RPA2|Rpo1-2|TCS4	RNA polymerase I subunit B	protein-coding
5751	chr1	26477751	26478150	+	0	NA	Intergenic	Intergenic	5510	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
60726	chr13	44272001	44272480	+	0	NA	Intergenic	Intergenic	-76040	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
79829	chr16	1434971	1435130	+	0	NA	TTS (NM_001365310)	TTS (NM_001365310)	3972	NM_001365310	105371045		NM_001365310	ENSG00000284395	PERCC1	DIAR11|ICR|gs104	proline and glutamate rich with coiled coil 1	protein-coding
44761	chr11	112115601	112115800	+	0	NA	Intergenic	Intergenic	28827	NM_001276503	6392		NM_003002	ENSG00000204370	SDHD	CBT1|CII-4|CWS3|MC2DN3|PGL|PGL1|PPGL1|QPs3|SDH4|cybS	succinate dehydrogenase complex subunit D	protein-coding
94237	chr17	28665301	28665700	+	0	NA	intron (NM_003170, intron 1 of 36)	AluSx1|SINE|Alu	3295	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
68332	chr14	77594571	77594730	+	0	NA	intron (NM_004863, intron 2 of 11)	intron (NM_004863, intron 2 of 11)	21987	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
49704	chr12	31073271	31074920	+	0	NA	promoter-TSS (NR_038927)	promoter-TSS (NR_038927)	235	NM_001257145	1663		NM_004399	ENSG00000013573	DDX11	CHL1|CHLR1|KRG2|WABS	DEAD/H-box helicase 11	protein-coding
88755	chr16	86566571	86567630	+	0	NA	5' UTR (NM_005251, exon 1 of 1)	5' UTR (NM_005251, exon 1 of 1)	271	NM_005251	2303		NM_005251	ENSG00000176692	FOXC2	FKHL14|LD|MFH-1|MFH1	forkhead box C2	protein-coding
103330	chr17	77984301	77984700	+	0	NA	Intergenic	AluJo|SINE|Alu	-19737	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
168098	chr3	138410701	138410900	+	0	NA	Intergenic	Intergenic	-23773	NR_136409	83850		NM_031913	ENSG00000158220	ESYT3	CHR3SYT|E-Syt3|FAM62C	extended synaptotagmin 3	protein-coding
160310	chr3	27481151	27481250	+	0	NA	intron (NR_135544, intron 1 of 24)	intron (NR_135544, intron 1 of 24)	3184	NR_135543	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
8224	chr1	39685771	39685930	+	0	NA	intron (NM_016257, intron 1 of 3)	AluY|SINE|Alu	5583	NM_016257	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
98807	chr17	48296701	48297200	+	0	NA	intron (NR_131239, intron 2 of 2)	intron (NR_131239, intron 2 of 2)	2603	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
213504	chr7	139062151	139062730	+	0	NA	intron (NM_020119, intron 8 of 12)	intron (NM_020119, intron 8 of 12)	-18283	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
80084	chr16	1998951	1999580	+	0	NA	intron (NM_178167, intron 11 of 13)	intron (NM_178167, intron 11 of 13)	9295	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
238351	chrX	149630101	149630430	+	0	NA	intron (NM_032508, intron 1 of 6)	intron (NM_032508, intron 1 of 6)	1527	NM_001282302	84548		NM_032508	ENSG00000269556	TMEM185A	CXorf13|FAM11A|FRAXF|ee3	transmembrane protein 185A	protein-coding
223551	chr8	144218071	144218230	+	0	NA	intron (NM_032450, intron 12 of 43)	intron (NM_032450, intron 12 of 43)	44587	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
120134	chr19	42206501	42207050	+	0	NA	intron (NR_073046, intron 3 of 4)	intron (NR_073046, intron 3 of 4)	10902	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
123262	chr19	53394671	53396100	+	0	NA	intron (NM_001350496, intron 1 of 12)	CpG	236	NM_001350496	110116772		NM_001350496		ZNF765-ZNF761	-	ZNF765-ZNF761 readthrough	protein-coding
11510	chr1	90945421	90945680	+	0	NA	intron (NM_201269, intron 2 of 5)	intron (NM_201269, intron 2 of 5)	75958	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
157020	chr22	42547071	42547300	+	0	NA	Intergenic	AluSp|SINE|Alu	-6771	NR_104301	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
24271	chr1	236417201	236418250	+	0	NA	intron (NM_080738, intron 3 of 5)	intron (NM_080738, intron 3 of 5)	22312	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
59626	chr13	27984301	27984580	+	0	NA	intron (NM_001105577, intron 1 of 1)	intron (NM_001105577, intron 1 of 1)	4253	NM_001105577	646625		NM_001105577	ENSG00000183463	URAD	PRHOXNB	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase	protein-coding
3768	chr1	16685771	16686230	+	0	NA	Intergenic	Intergenic	4745	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
158827	chr3	9768351	9768650	+	0	NA	intron (NM_003656, intron 1 of 11)	intron (NM_003656, intron 1 of 11)	1447	NM_003656	8536		NM_003656	ENSG00000134072	CAMK1	CAMKI	calcium/calmodulin dependent protein kinase I	protein-coding
21246	chr1	204361321	204361830	+	0	NA	Intergenic	Intergenic	-1646	NM_014935	22874		NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
85775	chr16	56935551	56936000	+	0	NA	intron (NM_014685, intron 3 of 7)	intron (NM_014685, intron 3 of 7)	3633	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
109644	chr19	1002571	1002730	+	0	NA	intron (NM_138690, intron 1 of 8)	intron (NM_138690, intron 1 of 8)	2231	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
224061	chr9	3530571	3530730	+	0	NA	Intergenic	AluJr|SINE|Alu	-4649	NM_134428	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
97895	chr17	45114121	45114380	+	0	NA	TTS (NR_106842)	TTS (NR_106842)	183	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
112278	chr19	5810921	5811180	+	0	NA	intron (NM_004558, intron 1 of 2)	AluSz|SINE|Alu	5983	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
97401	chr17	43386301	43386700	+	0	NA	intron (NR_027413, intron 1 of 3)	MIR|SINE|MIR	2398	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
180271	chr5	1791501	1791700	+	0	NA	Intergenic	AluJb|SINE|Alu	8237	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
85614	chr16	53891801	53892430	+	0	NA	intron (NM_001363903, intron 7 of 7)	intron (NM_001363903, intron 7 of 7)	-147278	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
134650	chr2	144445321	144445580	+	0	NA	intron (NM_014795, intron 2 of 9)	(TCTCTC)n|Simple_repeat|Simple_repeat	-74164	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
133383	chr2	118094351	118094650	+	0	NA	intron (NM_001321331, intron 2 of 5)	intron (NM_001321331, intron 2 of 5)	5950	NM_001321329	51141		NM_016133	ENSG00000125629	INSIG2	INSIG-2	insulin induced gene 2	protein-coding
167609	chr3	129573551	129573900	+	0	NA	exon (NM_015103, exon 13 of 36)	exon (NM_015103, exon 13 of 36)	25340	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
128583	chr2	60911801	60912150	+	0	NA	intron (NM_001291746, intron 4 of 9)	AluSc|SINE|Alu	30401	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
227235	chr9	89279001	89279680	+	0	NA	Intergenic	Intergenic	-31855	NM_001827	1164		NM_001827	ENSG00000123975	CKS2	CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding
19454	chr1	174866051	174866150	+	0	NA	intron (NM_001366447, intron 19 of 20)	GA-rich|Low_complexity|Low_complexity	-8286	NM_001243763	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
238678	chrX	154041051	154041350	+	0	NA	intron (NM_001369393, intron 1 of 3)	Tigger9a|DNA|TcMar-Tigger	-21211	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
125508	chr2	12717501	12718300	+	0	NA	5' UTR (NM_021643, exon 1 of 3)	5' UTR (NM_021643, exon 1 of 3)	964	NR_027303	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
234156	chrX	10516551	10516650	+	0	NA	intron (NM_001193278, intron 2 of 6)	(TG)n|Simple_repeat|Simple_repeat	51003	NM_001193280	4281		NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding
140743	chr2	234479471	234479830	+	0	NA	Intergenic	Intergenic	17399	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
231475	chr9	131349871	131350550	+	0	NA	Intergenic	L2b|LINE|L2	-23441	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
172472	chr4	2056921	2057380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2177	NM_178557	339983		NM_178557	ENSG00000185818	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8 like	protein-coding
57743	chr12	122944651	122945150	+	0	NA	intron (NM_203444, intron 6 of 11)	intron (NM_203444, intron 6 of 11)	21563	NM_001243014	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
120616	chr19	45037101	45037850	+	0	NA	exon (NM_006509, exon 11 of 11)	exon (NM_006509, exon 11 of 11)	-1570	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
188745	chr5	157549871	157550630	+	0	NA	intron (NM_033274, intron 3 of 22)	MLT1C|LTR|ERVL-MaLR	25525	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
19232	chr1	172609451	172609800	+	0	NA	intron (NM_001282751, intron 21 of 21)	intron (NM_001282751, intron 21 of 21)	-49383	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
197700	chr6	85671171	85671330	+	0	NA	Intergenic	Charlie13a|DNA|hAT-Charlie	6118	NR_002743	26799		NR_002743		SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
220110	chr8	94555271	94555530	+	0	NA	Intergenic	Intergenic	-1882	NM_183009	25962		NM_015496	ENSG00000164944	VIRMA	KIAA1429|MSTP054|fSAP121	vir like m6A methyltransferase associated	protein-coding
20469	chr1	198611971	198612500	+	0	NA	Intergenic	L1PA2|LINE|L1	-26733	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
169407	chr3	160801471	160802300	+	0	NA	intron (NM_139245, intron 1 of 3)	intron (NM_139245, intron 1 of 3)	-40264	NM_001317911	151742		NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
97860	chr17	44986121	44986380	+	0	NA	Intergenic	Intergenic	-17947	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
14850	chr1	146378821	146379530	+	0	NA	Intergenic	Intergenic	2368	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
167959	chr3	136660651	136660750	+	0	NA	intron (NM_005862, intron 1 of 33)	AluJb|SINE|Alu	91678	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
134900	chr2	149330421	149330750	+	0	NA	promoter-TSS (NM_194317)	promoter-TSS (NM_194317)	-2	NM_194317	130574		NM_194317	ENSG00000187123	LYPD6	-	LY6/PLAUR domain containing 6	protein-coding
203314	chr6	170150101	170150500	+	0	NA	Intergenic	Intergenic	-10342	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
52109	chr12	54190051	54190530	+	0	NA	Intergenic	Intergenic	-1296	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
168066	chr3	137807321	137807400	+	0	NA	Intergenic	Intergenic	35449	NR_109987	100507274		NR_109987	ENSG00000239513	LINC01210	-	long intergenic non-protein coding RNA 1210	ncRNA
121513	chr19	47190021	47190880	+	0	NA	intron (NM_001145713, intron 6 of 6)	intron (NM_001145713, intron 6 of 6)	-36492	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
1894	chr1	6446151	6446530	+	0	NA	intron (NM_031475, intron 7 of 12)	intron (NM_031475, intron 7 of 12)	-16444	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
136374	chr2	176106571	176107130	+	0	NA	promoter-TSS (NM_021192)	promoter-TSS (NM_021192)	-430	NM_021192	3237		NM_021192	ENSG00000128713	HOXD11	HOX4|HOX4F	homeobox D11	protein-coding
237444	chrX	119685271	119685750	+	0	NA	intron (NM_145799, intron 1 of 10)	MIR3|SINE|MIR	7658	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
50845	chr12	49123651	49124300	+	0	NA	Intergenic	AluY|SINE|Alu	7420	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
34376	chr10	132298421	132298750	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	8637	NM_001318879	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
213165	chr7	131859251	131859450	+	0	NA	Intergenic	Intergenic	-50870	NR_110836	101928782		NR_110836	ENSG00000224865	LOC101928782	-	uncharacterized LOC101928782	ncRNA
140644	chr2	233480501	233480900	+	0	NA	non-coding (NR_168055, exon 7 of 8)	non-coding (NR_168055, exon 7 of 8)	9198	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
35349	chr11	1202971	1203900	+	0	NA	Intergenic	Intergenic	-19631	NM_002458	727897		NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
31341	chr10	93073671	93074300	+	0	NA	promoter-TSS (NM_000783)	promoter-TSS (NM_000783)	92	NM_000783	1592		NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	cytochrome P450 family 26 subfamily A member 1	protein-coding
131251	chr2	96020001	96020400	+	0	NA	intron (NR_003698, intron 1 of 3)	intron (NR_003698, intron 1 of 3)	9649	NR_003698	729234		NR_003698		FAHD2CP	-	fumarylacetoacetate hydrolase domain containing 2C, pseudogene	pseudo
231562	chr9	131491251	131491350	+	0	NA	TTS (NR_002914).2	TTS (NR_002914).2	814	NR_002914	26786		NR_002914	ENSG00000235284	SNORD62A	RNU62|U62|U62A	small nucleolar RNA, C/D box 62A	snoRNA
46184	chr11	123303471	123304380	+	0	NA	Intergenic	Intergenic	-54497	NM_001367419	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
101778	chr17	73166621	73167150	+	0	NA	intron (NM_001050, intron 1 of 1)	intron (NM_001050, intron 1 of 1)	1875	NM_001050	6752		NM_001050	ENSG00000180616	SSTR2	SST2	somatostatin receptor 2	protein-coding
190014	chr5	177482321	177482600	+	0	NA	TTS (NM_005451)	TTS (NM_005451)	-8826	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
91242	chr17	3946951	3947250	+	0	NA	intron (NM_174953, intron 8 of 22)	intron (NM_174953, intron 8 of 22)	17337	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
72549	chr15	34366001	34369430	+	0	NA	promoter-TSS (NM_153613)	promoter-TSS (NM_153613)	-519	NM_153613	254531		NM_153613	ENSG00000176454	LPCAT4	AGPAT7|AYTL3|LPAAT-eta|LPEAT2|LPLAT10	lysophosphatidylcholine acyltransferase 4	protein-coding
109743	chr19	1107871	1108130	+	0	NA	3' UTR (NM_014963, exon 32 of 32)	3' UTR (NM_014963, exon 32 of 32)	3350	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
106540	chr18	21594901	21595130	+	0	NA	intron (NM_052911, intron 1 of 11)	AluJo|SINE|Alu	5689	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
65897	chr14	55245701	55246030	+	0	NA	Intergenic	Intergenic	-25556	NM_017943	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
228815	chr9	111983571	111983930	+	0	NA	Intergenic	Intergenic	51650	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
216041	chr8	9655221	9655480	+	0	NA	intron (NM_003747, intron 3 of 26)	L1P1|LINE|L1	-86322	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
96130	chr17	39657101	39657300	+	0	NA	intron (NM_001165938, intron 3 of 13)	intron (NM_001165938, intron 3 of 13)	-8149	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
78381	chr15	91849671	91851000	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-3373	NM_013272	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
196196	chr6	42741221	42741680	+	0	NA	Intergenic	AluJo|SINE|Alu	4653	NM_003192	6903		NM_003192	ENSG00000124659	TBCC	CFC	tubulin folding cofactor C	protein-coding
1363	chr1	2505551	2505800	+	0	NA	TTS (NM_001303012)	TTS (NM_001303012)	20921	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
90793	chr17	2138321	2138750	+	0	NA	intron (NM_001256827, intron 6 of 11)	intron (NM_001256827, intron 6 of 11)	-49774	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
189474	chr5	173071171	173071330	+	0	NA	intron (NM_001168393, intron 1 of 3)	AluSq|SINE|Alu	14898	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
221885	chr8	128553101	128553630	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	11314	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
172565	chr4	2420821	2421080	+	0	NA	intron (NM_001193282, intron 1 of 15)	MLT1J|LTR|ERVL-MaLR	1995	NM_001193282	402160		NM_001193282	ENSG00000206113	CFAP99	-	cilia and flagella associated protein 99	protein-coding
164535	chr3	63941151	63941250	+	0	NA	intron (NM_001177387, intron 3 of 12)	intron (NM_001177387, intron 3 of 12)	-26594	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
37069	chr11	12412271	12412550	+	0	NA	intron (NM_018222, intron 1 of 12)	intron (NM_018222, intron 1 of 12)	34839	NM_018222	55742		NM_018222	ENSG00000197702	PARVA	CH-ILKBP|MXRA2	parvin alpha	protein-coding
93537	chr17	19046621	19047500	+	0	NA	promoter-TSS (NM_006613)	promoter-TSS (NM_006613)	-103	NM_001330148	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
25026	chr10	3669871	3670030	+	0	NA	intron (NR_131187, intron 1 of 1)	L2a|LINE|L2	115259	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
126411	chr2	27663071	27664480	+	0	NA	promoter-TSS (NM_001282732)	promoter-TSS (NM_001282732)	65	NM_001282731	9913		NM_014860	ENSG00000119760	SUPT7L	SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H	SPT7 like, STAGA complex subunit gamma	protein-coding
155532	chr22	38702701	38703650	+	0	NA	Intergenic	AluY|SINE|Alu	-1772	NM_001360235	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
28003	chr10	43145221	43145800	+	0	NA	intron (NR_135077, intron 1 of 8)	AluJr|SINE|Alu	7065	NM_018590	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
150478	chr21	42631021	42631480	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-16155	NR_131192	101928233		NR_131192	ENSG00000225431	LINC01671	-	long intergenic non-protein coding RNA 1671	ncRNA
43981	chr11	94130121	94130830	+	0	NA	intron (NM_015368, intron 1 of 4)	intron (NM_015368, intron 1 of 4)	1634	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
224438	chr9	15310321	15310980	+	0	NA	Intergenic	L2a|LINE|L2	-3290	NM_152574	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
149917	chr21	36155951	36157520	+	0	NA	promoter-TSS (NR_038894)	promoter-TSS (NR_038894)	-47	NM_001320714	9980		NM_005128	ENSG00000142197	DOP1B	21orf5|C21orf5|DOPEY2	DOP1 leucine zipper like protein B	protein-coding
130012	chr2	74175821	74176180	+	0	NA	intron (NM_001317112, intron 1 of 4)	AluSz|SINE|Alu	2314	NM_001317111	55233		NM_018221	ENSG00000114978	MOB1A	C2orf6|MABKL1B|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B	MOB kinase activator 1A	protein-coding
64797	chr14	34871371	34871780	+	0	NA	intron (NM_013448, intron 2 of 26)	intron (NM_013448, intron 2 of 26)	-2616	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
173678	chr4	15006121	15006760	+	0	NA	intron (NR_125911, intron 5 of 5)	intron (NR_125911, intron 5 of 5)	3959	NM_182646	132864		NM_182485	ENSG00000137449	CPEB2	CPE-BP2|CPEB-2|hCPEB-2	cytoplasmic polyadenylation element binding protein 2	protein-coding
42777	chr11	72754751	72755250	+	0	NA	exon (NM_006645, exon 7 of 7)	exon (NM_006645, exon 7 of 7)	-2611	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
162504	chr3	48580251	48580550	+	0	NA	intron (NM_000094, intron 55 of 118)	intron (NM_000094, intron 55 of 118)	-1423	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
52906	chr12	57224501	57226100	+	0	NA	exon (NM_007224, exon 2 of 2)	exon (NM_007224, exon 2 of 2)	-4411	NM_001166356	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
23620	chr1	230212221	230212750	+	0	NA	intron (NM_001291866, intron 3 of 15)	intron (NM_001291866, intron 3 of 15)	145247	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
5655	chr1	26288301	26289100	+	0	NA	intron (NM_001077262, intron 4 of 10)	MIRc|SINE|MIR	8614	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
216525	chr8	20542971	20543230	+	0	NA	Intergenic	Intergenic	71826	NR_145737	109616983		NR_145737		SNORD3F	RNU3P2|SNORD3P2|U3|U3.2	small nucleolar RNA, C/D box 3F	snoRNA
38791	chr11	47239951	47240250	+	0	NA	TTS (NM_001300734)	TTS (NM_001300734)	-8200	NM_001251935	10062		NM_005693	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	nuclear receptor subfamily 1 group H member 3	protein-coding
74306	chr15	58249801	58250200	+	0	NA	Intergenic	Intergenic	111619	NM_001320635	366		NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
220063	chr8	93908201	93908400	+	0	NA	Intergenic	MER11B|LTR|ERVK	7819	NR_039602	100616169		NR_039602	ENSG00000284288	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
196372	chr6	43246821	43248300	+	0	NA	intron (NM_032538, intron 2 of 14)	intron (NM_032538, intron 2 of 14)	4079	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
176788	chr4	102509321	102510550	+	0	NA	intron (NM_001382625, intron 1 of 24)	intron (NM_001382625, intron 1 of 24)	-7449	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
160169	chr3	23202701	23203900	+	0	NA	promoter-TSS (NM_152653)	promoter-TSS (NM_152653)	-27	NM_152653	7325		NM_152653	ENSG00000182247	UBE2E2	UBCH8	ubiquitin conjugating enzyme E2 E2	protein-coding
17642	chr1	157137791	157139850	+	0	NA	promoter-TSS (NM_001145312)	promoter-TSS (NM_001145312)	-229	NM_005240	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
49472	chr12	25193151	25193450	+	0	NA	intron (NM_001352063, intron 1 of 13)	MLT1C|LTR|ERVL-MaLR	1860	NR_147909	55259		NM_018272	ENSG00000118307	DNAI7	CASC1|CFAP94|LAS1|PPP1R54	dynein axonemal intermediate chain 7	protein-coding
95022	chr17	32446121	32446450	+	0	NA	intron (NM_001270482, intron 1 of 12)	intron (NM_001270482, intron 1 of 12)	1775	NM_001270482	5717		NM_002815	ENSG00000108671	PSMD11	Rpn6|S9|p44.5	proteasome 26S subunit, non-ATPase 11	protein-coding
71942	chr15	23042851	23043530	+	0	NA	Intergenic	Intergenic	-3517	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
144741	chr20	36590001	36591280	+	0	NA	intron (NM_001199535, intron 2 of 4)	AluJo|SINE|Alu	-15139	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
43792	chr11	86291571	86292180	+	0	NA	Intergenic	Intergenic	-10365	NM_016401	51501		NM_016401	ENSG00000149196	HIKESHI	C11orf73|HLD13|HSPC138|HSPC179|L7RN6|OPI10	heat shock protein nuclear import factor hikeshi	protein-coding
184273	chr5	96744901	96745300	+	0	NA	intron (NR_104285, intron 1 of 17)	intron (NR_104285, intron 1 of 17)	1498	NR_104285	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
205121	chr7	6930421	6931050	+	0	NA	Intergenic	Intergenic	-104460	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
222365	chr8	133574051	133574650	+	0	NA	Intergenic	Intergenic	-2463	NM_173344	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
15750	chr1	151143271	151143430	+	0	NA	intron (NM_001178061, intron 2 of 19)	intron (NM_001178061, intron 2 of 19)	3281	NM_030913	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
106246	chr18	11995371	11996130	+	0	NA	intron (NM_014214, intron 1 of 7)	intron (NM_014214, intron 1 of 7)	14243	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
126597	chr2	28774271	28774700	+	0	NA	intron (NM_206876, intron 2 of 8)	AluSq2|SINE|Alu	22655	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
100917	chr17	64464901	64465100	+	0	NA	intron (NM_001085423, intron 5 of 9)	AluSx|SINE|Alu	15885	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
230919	chr9	129326351	129326650	+	0	NA	Intergenic	Intergenic	5484	NR_149714	414318		NR_149714		LINC02913	C9orf106	long intergenic non-protein coding RNA 2913	ncRNA
203881	chr7	1478071	1479000	+	0	NA	intron (NM_001080453, intron 32 of 47)	intron (NM_001080453, intron 32 of 47)	-19065	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
147827	chr20	62736301	62736830	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	27729	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
84875	chr16	31176971	31177950	+	0	NA	Intergenic	MIR|SINE|MIR	-2650	NM_001170634	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
154740	chr22	36476301	36476700	+	0	NA	intron (NM_012473, intron 3 of 3)	AluSx3|SINE|Alu	5140	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
38982	chr11	47587071	47587330	+	0	NA	intron (NM_001367967, intron 1 of 1)	intron (NM_001367967, intron 1 of 1)	522	NM_001164379	399888		NM_001164379	ENSG00000196666	FAM180B	-	family with sequence similarity 180 member B	protein-coding
182577	chr5	65960471	65960830	+	0	NA	intron (NM_001253697, intron 1 of 25)	MER20B|DNA|hAT-Charlie	-15077	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
198701	chr6	108121071	108121230	+	0	NA	Intergenic	Intergenic	-2483	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
163937	chr3	52709101	52709550	+	0	NA	3' UTR (NM_001193533, exon 15 of 15)	3' UTR (NM_001193533, exon 15 of 15)	3219	NM_014041	28972		NM_014041	ENSG00000114902	SPCS1	HSPC033|SPC1|SPC12|YJR010C-A	signal peptidase complex subunit 1	protein-coding
87566	chr16	72092171	72092330	+	0	NA	intron (NM_001142318, intron 1 of 3)	AluSq|SINE|Alu	1370	NM_017853	54957		NM_017853	ENSG00000140830	TXNL4B	DLP|Dim2	thioredoxin like 4B	protein-coding
83764	chr16	28714471	28714830	+	0	NA	exon (NM_001099661, exon 6 of 21).2	exon (NM_001099661, exon 6 of 21).2	3186	NM_003752	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
146963	chr20	52423651	52424930	+	0	NA	Intergenic	Intergenic	-196548	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
124109	chr19	55659101	55659500	+	0	NA	exon (NM_001012478, exon 2 of 12)	exon (NM_001012478, exon 2 of 12)	4265	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
9683	chr1	52913751	52913850	+	0	NA	intron (NM_001319958, intron 2 of 9)	L1MC1|LINE|L1	7940	NM_018281	55268		NM_018281	ENSG00000121310	ECHDC2	-	enoyl-CoA hydratase domain containing 2	protein-coding
162165	chr3	46981821	46982480	+	0	NA	promoter-TSS (NM_144716)	promoter-TSS (NM_144716)	-140	NM_144716	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
108853	chr18	79309351	79309450	+	0	NA	intron (NM_198531, intron 15 of 29)	intron (NM_198531, intron 15 of 29)	-86530	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
109776	chr19	1136271	1136800	+	0	NA	intron (NM_014963, intron 4 of 31)	intron (NM_014963, intron 4 of 31)	-4314	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
184540	chr5	102562171	102562330	+	0	NA	Intergenic	L1MA4|LINE|L1	-19118	NR_047462	100861468		NR_047462	ENSG00000250958	LINC00492	-	long intergenic non-protein coding RNA 492	ncRNA
141574	chr2	241572101	241572300	+	0	NA	intron (NM_032515, intron 4 of 4)	intron (NM_032515, intron 4 of 4)	-13057	NR_033346	100379249		NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	ncRNA
77673	chr15	85594801	85595200	+	0	NA	intron (NM_007200, intron 8 of 36)	intron (NM_007200, intron 8 of 36)	-24950	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
171283	chr3	195895701	195897600	+	0	NA	promoter-TSS (NM_001382274)	promoter-TSS (NM_001382274)	-708	NM_001382274	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
70037	chr14	100107321	100107650	+	0	NA	intron (NM_016337, intron 3 of 13)	MIR3|SINE|MIR	2029	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
60233	chr13	40561101	40561300	+	0	NA	intron (NM_002015, intron 1 of 2)	AluY|SINE|Alu	-80194	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
2808	chr1	11010201	11010400	+	0	NA	Intergenic	AluJr|SINE|Alu	-2354	NM_007375	23435		NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding
174135	chr4	36227371	36227530	+	0	NA	intron (NR_146894, intron 2 of 32)	L2a|LINE|L2	16489	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
231854	chr9	132850801	132851000	+	0	NA	intron (NM_001371771, intron 5 of 12)	intron (NM_001371771, intron 5 of 12)	27384	NM_001317958	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
148020	chr20	63106751	63107180	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-4646	NR_003245	768097		NR_003245	ENSG00000231133	HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B	ncRNA
45168	chr11	117219501	117219900	+	0	NA	exon (NM_004716, exon 10 of 17)	exon (NM_004716, exon 10 of 17)	12373	NM_004716	9159		NM_004716	ENSG00000160613	PCSK7	LPC|PC7|PC8|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding
152777	chr22	21810551	21810880	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	56930	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
171912	chr4	833621	833880	+	0	NA	Intergenic	Intergenic	-7621	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
236026	chrX	55135351	55135450	+	0	NA	Intergenic	Intergenic	25702	NM_001166703	90736		NM_138362	ENSG00000182518	VCF2	CXorf44|FAM104B	VCP nuclear cofactor family member 2	protein-coding
11973	chr1	94247171	94247780	+	0	NA	intron (NM_001328664, intron 1 of 22)	CpG	271	NM_001328664	9411		NM_004815	ENSG00000137962	ARHGAP29	PARG1	Rho GTPase activating protein 29	protein-coding
45400	chr11	118338171	118340880	+	0	NA	intron (NM_001040651, intron 2 of 3)	intron (NM_001040651, intron 2 of 3)	3180	NM_000732	915		NM_000732	ENSG00000167286	CD3D	CD3-DELTA|CD3DELTA|IMD19|T3D	CD3 delta subunit of T-cell receptor complex	protein-coding
220369	chr8	99882951	99883250	+	0	NA	intron (NM_004374, intron 3 of 3)	L1MB2|LINE|L1	10607	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
10739	chr1	76260301	76260600	+	0	NA	intron (NM_001349108, intron 1 of 3)	MIR|SINE|MIR	185704	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
224867	chr9	31294221	31294680	+	0	NA	Intergenic	L1PA2|LINE|L1	87040	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
232915	chr9	136865301	136867000	+	0	NA	intron (NM_001281297, intron 1 of 4)	(CCCGG)n|Simple_repeat|Simple_repeat	158	NM_001281297	8721		NM_003792	ENSG00000107223	EDF1	CFAP280|EDF-1|MBF1	endothelial differentiation related factor 1	protein-coding
237350	chrX	118601101	118601930	+	0	NA	intron (NM_144658, intron 23 of 52)	intron (NM_144658, intron 23 of 52)	105606	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
178213	chr4	142568101	142568650	+	0	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	-7620	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
147545	chr20	59598771	59598930	+	0	NA	intron (NM_001199505, intron 1 of 12)	intron (NM_001199505, intron 1 of 12)	-5690	NM_080672	116154		NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
189961	chr5	177430721	177433050	+	0	NA	intron (NM_001004105, intron 2 of 15)	intron (NM_001004105, intron 2 of 15)	5199	NM_002082	2870		NM_002082	ENSG00000198055	GRK6	GPRK6	G protein-coupled receptor kinase 6	protein-coding
10568	chr1	67261651	67262000	+	0	NA	Intergenic	Intergenic	-45539	NR_047584	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
158021	chr22	49914671	49915030	+	0	NA	intron (NM_024105, intron 1 of 9)	AluJr|SINE|Alu	3588	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
182320	chr5	59008851	59009350	+	0	NA	intron (NM_001364603, intron 7 of 15)	L1ME1|LINE|L1	-9202	NM_001197223	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
18770	chr1	167509101	167509700	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	9129	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
191737	chr6	13741371	13741550	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-29625	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
178982	chr4	163166501	163167630	+	0	NA	promoter-TSS (NM_001128931)	promoter-TSS (NM_001128931)	-175	NM_138386	92345		NM_138386	ENSG00000145414	NAF1	PFBMFT7	nuclear assembly factor 1 ribonucleoprotein	protein-coding
52337	chr12	54988271	54988800	+	0	NA	Intergenic	Intergenic	-3773	NM_001136030	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
53857	chr12	69879151	69879580	+	0	NA	exon (NM_182530, exon 4 of 25)	exon (NM_182530, exon 4 of 25)	54138	NM_182530	196446		NM_182530	ENSG00000166268	MYRFL	C12orf15|C12orf28|bcm1377	myelin regulatory factor like	protein-coding
45861	chr11	119642251	119642350	+	0	NA	intron (NM_203285, intron 5 of 7)	intron (NM_203285, intron 5 of 7)	86900	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
74455	chr15	59656951	59658330	+	0	NA	promoter-TSS (NM_001320930)	promoter-TSS (NM_001320930)	-125	NM_001320930	2958		NM_004492	ENSG00000140307	GTF2A2	HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS	general transcription factor IIA subunit 2	protein-coding
41869	chr11	67224271	67224630	+	0	NA	intron (NM_012308, intron 10 of 20)	AluJb|SINE|Alu	-15564	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
140776	chr2	235494871	235495530	+	0	NA	intron (NM_001037131, intron 1 of 17)	CpG	1157	NM_001244888	116987		NM_014914	ENSG00000157985	AGAP1	AGAP-1|CENTG2|GGAP1|cnt-g2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
16346	chr1	154277571	154277730	+	0	NA	Intergenic	Intergenic	5021	NM_006118	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
65248	chr14	49898071	49898580	+	0	NA	Intergenic	Intergenic	5243	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
74937	chr15	63752101	63752700	+	0	NA	intron (NM_003922, intron 8 of 77)	intron (NM_003922, intron 8 of 77)	81548	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
9716	chr1	53129371	53129530	+	0	NA	intron (NM_001287595, intron 2 of 10)	intron (NM_001287595, intron 2 of 10)	13188	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
1415	chr1	2566251	2566980	+	0	NA	promoter-TSS (NR_121638)	promoter-TSS (NR_121638)	80	NR_121638	100996583		NR_121638	ENSG00000228037	LOC100996583	-	uncharacterized LOC100996583	ncRNA
23571	chr1	229441021	229441430	+	0	NA	3' UTR (NM_018230, exon 26 of 26)	3' UTR (NM_018230, exon 26 of 26)	-7131	NM_001100	58		NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|CMYP2A|CMYP2B|CMYP2C|MPFD|NEM1|NEM2|NEM3|SHPM	actin alpha 1, skeletal muscle	protein-coding
193528	chr6	30591901	30592300	+	0	NA	TTS (NM_001025091).2	TTS (NM_001025091).2	7768	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
173351	chr4	7803901	7804580	+	0	NA	intron (NM_001371091, intron 10 of 17)	intron (NM_001371091, intron 10 of 17)	50150	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
168730	chr3	150760191	150761000	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	2574	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
177833	chr4	127380721	127381180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-252007	NM_015693	27152		NM_015693	ENSG00000164066	INTU	CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20	inturned planar cell polarity protein	protein-coding
22267	chr1	212682571	212683530	+	0	NA	Intergenic	Intergenic	16790	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
198639	chr6	107794651	107795130	+	0	NA	intron (NM_198081, intron 1 of 7)	MLT1C|LTR|ERVL-MaLR	29423	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
201555	chr6	149248751	149249380	+	0	NA	intron (NR_149096, intron 1 of 2)	intron (NR_149096, intron 1 of 2)	8486	NR_149096	105378049		NR_149096	ENSG00000225924	TAB2-AS1	-	TAB2 antisense RNA 1	ncRNA
185732	chr5	132074521	132074800	+	0	NA	intron (NM_000758, intron 2 of 3)	intron (NM_000758, intron 2 of 3)	871	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
183008	chr5	72816101	72817600	+	0	NA	5' UTR (NM_001364292, exon 1 of 25)	5' UTR (NM_001364292, exon 1 of 25)	189	NM_001364292	3842		NM_002270	ENSG00000083312	TNPO1	IPO2|KPNB2|MIP|MIP1|TRN	transportin 1	protein-coding
235625	chrX	48127301	48127580	+	0	NA	intron (NM_205856, intron 1 of 4).2	intron (NM_205856, intron 1 of 4).2	219	NM_205856	389852		NM_205856	ENSG00000171489	SPACA5	LYC5|LYZL5|PNPK6288|SLLP-X|SLLP2|UNQ6288	sperm acrosome associated 5	protein-coding
216847	chr8	22604351	22605750	+	0	NA	promoter-TSS (NM_001363068)	promoter-TSS (NM_001363068)	8	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
70814	chr14	103550821	103551480	+	0	NA	Intergenic	Intergenic	11170	NM_001015049	9529		NM_004873	ENSG00000166170	BAG5	BAG-5|CMD2F	BAG cochaperone 5	protein-coding
28669	chr10	60535151	60535250	+	0	NA	intron (NM_001204403, intron 2 of 43)	intron (NM_001204403, intron 2 of 43)	37756	NM_001204404	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
46745	chr11	129230051	129230150	+	0	NA	intron (NM_001378025, intron 1 of 21)	AluJb|SINE|Alu	-37775	NM_001378024	9743		NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
189855	chr5	177129801	177130000	+	0	NA	Intergenic	Intergenic	-3179	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
44428	chr11	104556771	104556930	+	0	NA	Intergenic	L1M4b|LINE|L1	52452	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
95392	chr17	35903701	35903900	+	0	NA	TTS (NR_126038)	TTS (NR_126038)	7223	NR_126038	100533789		NR_126038		LRRC37A8P	-	leucine rich repeat containing 37 member A8, pseudogene	pseudo
209623	chr7	77714721	77715580	+	0	NA	intron (NM_198467, intron 1 of 7)	AluSx|SINE|Alu	-17805	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
180826	chr5	32511851	32511980	+	0	NA	Intergenic	Intergenic	-67175	NR_144318	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
173857	chr4	22672421	22673080	+	0	NA	Intergenic	Intergenic	-20164	NM_020973	57733		NM_020973	ENSG00000249948	GBA3	CBG|CBGL1|GLUC|KLRP	glucosylceramidase beta 3 (gene/pseudogene)	protein-coding
35291	chr11	975101	975500	+	0	NA	intron (NR_144509, intron 4 of 20)	CpG	49430	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
31299	chr10	92595071	92595430	+	0	NA	intron (NM_004523, intron 1 of 21)	AluSx|SINE|Alu	2120	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
14594	chr1	145222171	145222600	+	0	NA	Intergenic	MER31-int|LTR|ERV1	-6333	NR_111955	103091866		NR_111954		LINC01145	-	long intergenic non-protein coding RNA 1145	ncRNA
145848	chr20	45884871	45885500	+	0	NA	TTS (NM_080603)	TTS (NM_080603)	2437	NM_080608	128497		NM_080608	ENSG00000149634	SPATA25	C20orf165|TSG23|dJ337O18.8	spermatogenesis associated 25	protein-coding
129272	chr2	68404721	68405280	+	0	NA	Intergenic	L1PA7|LINE|L1	39718	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
171666	chr3	197682851	197682950	+	0	NA	intron (NM_014687, intron 13 of 19)	intron (NM_014687, intron 13 of 19)	-8324	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
1360	chr1	2502871	2503380	+	0	NA	intron (NM_001303012, intron 21 of 21)	intron (NM_001303012, intron 21 of 21)	23471	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
41671	chr11	66603451	66603750	+	0	NA	intron (NM_005125, intron 5 of 7)	AluY|SINE|Alu	10415	NM_005125	9973		NM_005125	ENSG00000173992	CCS	-	copper chaperone for superoxide dismutase	protein-coding
45679	chr11	119042121	119042380	+	0	NA	Intergenic	L1MC1|LINE|L1	-11344	NM_001164277	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
96468	chr17	40244801	40245200	+	0	NA	intron (NM_133264, intron 1 of 7)	intron (NM_133264, intron 1 of 7)	25696	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
170563	chr3	186796471	186796830	+	0	NA	intron (NM_002916, intron 4 of 10)	AluSx|SINE|Alu	9037	NR_002588	619568		NR_002588	ENSG00000263776	SNORA4	ACA4	small nucleolar RNA, H/ACA box 4	snoRNA
44646	chr11	110299321	110299880	+	0	NA	Intergenic	MER41B|LTR|ERV1	-2888	NM_001260493	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
96100	chr17	39624901	39625100	+	0	NA	Intergenic	Intergenic	-1952	NM_032192	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
12884	chr1	110262721	110263030	+	0	NA	Intergenic	Intergenic	52561	NM_001377331	3749		NM_004978	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	potassium voltage-gated channel subfamily C member 4	protein-coding
216341	chr8	15540351	15540650	+	0	NA	exon (NM_006765, exon 1 of 11)	exon (NM_006765, exon 1 of 11)	237	NM_001356429	7991		NM_006765	ENSG00000104723	TUSC3	D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2	tumor suppressor candidate 3	protein-coding
128948	chr2	64610651	64610950	+	0	NA	intron (NR_034023, intron 1 of 3)	intron (NR_034023, intron 1 of 3)	3488	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
117471	chr19	19746101	19746600	+	0	NA	Intergenic	Intergenic	-13238	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
236277	chrX	66037851	66037950	+	0	NA	intron (NM_001184830, intron 1 of 6)	intron (NM_001184830, intron 1 of 6)	2180	NM_007268	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
106279	chr18	12659521	12660400	+	0	NA	intron (NM_147163, intron 1 of 6)	intron (NM_147163, intron 1 of 6)	1221	NM_147163	56984		NM_020232	ENSG00000128789	PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|PRAAS4|TNFSF5IP1	proteasome assembly chaperone 2	protein-coding
194883	chr6	34669251	34669750	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-26654	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
233219	chr9	137231951	137232580	+	0	NA	intron (NM_080877, intron 3 of 12)	intron (NM_080877, intron 3 of 12)	1332	NM_080877	142680		NM_080877	ENSG00000198569	SLC34A3	HHRH|NPT2C|NPTIIc	solute carrier family 34 member 3	protein-coding
59374	chr13	24720051	24720150	+	0	NA	Intergenic	Intergenic	39689	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
103217	chr17	77483871	77484430	+	0	NA	intron (NM_001293697, intron 2 of 9)	intron (NM_001293697, intron 2 of 9)	8515	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
201632	chr6	149454371	149454530	+	0	NA	intron (NM_207360, intron 4 of 5)	intron (NM_207360, intron 4 of 5)	30564	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
58557	chr12	132329051	132329950	+	0	NA	promoter-TSS (NM_001122636)	promoter-TSS (NM_001122636)	89	NM_001122636	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
54962	chr12	96257501	96257700	+	0	NA	intron (NM_001303511, intron 1 of 2)	intron (NM_001303511, intron 1 of 2)	2102	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
190314	chr5	179608931	179609790	+	0	NA	intron (NM_001040452, intron 17 of 17).2	intron (NM_001040452, intron 17 of 17).2	-5619	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
160237	chr3	23962551	23962850	+	0	NA	intron (NM_005126, intron 5 of 7)	intron (NM_005126, intron 5 of 7)	-16138	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
137423	chr2	196415401	196415650	+	0	NA	intron (NM_001348768, intron 2 of 28)	MER63A|DNA|hAT-Blackjack	-53348	NM_001304840	57520		NM_020760	ENSG00000138411	HECW2	NDHSAL|NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
157577	chr22	45976721	45977650	+	0	NA	promoter-TSS (NM_058238)	promoter-TSS (NM_058238)	-23	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
72362	chr15	31350451	31350750	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	23765	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
168366	chr3	141898621	141898880	+	0	NA	intron (NM_001679, intron 1 of 6)	L1MB8|LINE|L1	22107	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
136074	chr2	173134521	173134800	+	0	NA	intron (NM_133646, intron 2 of 11)	L3|LINE|CR1	58814	NM_016653	51776		NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
197185	chr6	63576221	63576880	+	0	NA	non-coding (NR_169593, exon 2 of 6)	non-coding (NR_169593, exon 2 of 6)	4070	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
37354	chr11	14971851	14972350	+	0	NA	intron (NM_001378949, intron 1 of 4)	CpG-4024	251	NM_001741	796		NM_001741	ENSG00000110680	CALCA	CALC1|CGRP|CGRP-I|CGRP-alpha|CGRP1|CT|KC|PCT	calcitonin related polypeptide alpha	protein-coding
25396	chr10	6515101	6515500	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	64976	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
52139	chr12	54214401	54215350	+	0	NA	Intergenic	Intergenic	16601	NR_039851	100616400		NR_039851	ENSG00000283803	MIR3198-2	mir-3198-2	microRNA 3198-2	ncRNA
59	chr1	272101	272600	+	0	NA	Intergenic	Intergenic	-65753	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
203014	chr6	163432101	163432500	+	0	NA	intron (NM_206854, intron 1 of 6)	intron (NM_206854, intron 1 of 6)	17582	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
73698	chr15	45110321	45110780	+	0	NA	intron (NM_001363711, intron 8 of 33)	intron (NM_001363711, intron 8 of 33)	3611	NM_014080	50506		NM_014080	ENSG00000140279	DUOX2	LNOX2|NOXEF2|P138-TOX|TDH6|THOX2	dual oxidase 2	protein-coding
228198	chr9	97710471	97711800	+	0	NA	intron (NR_147055, intron 9 of 10)	MIR3|SINE|MIR	-13726	NR_149094	7507		NM_000380	ENSG00000136936	XPA	XP1|XPAC	XPA, DNA damage recognition and repair factor	protein-coding
19202	chr1	172426971	172427630	+	0	NA	intron (NM_139240, intron 1 of 6)	L2a|LINE|L2	6615	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
61959	chr13	79393671	79394800	+	0	NA	intron (NM_022118, intron 1 of 20)	MER50-int|LTR|ERV1	11986	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
65951	chr14	55762771	55762930	+	0	NA	Intergenic	Intergenic	-3395	NR_004844	645683		NR_004844	ENSG00000293056	RPL13AP3	RPL13A_11_1370	ribosomal protein L13a pseudogene 3	pseudo
176294	chr4	87237551	87237850	+	0	NA	Intergenic	AluJb|SINE|Alu	-17082	NM_001292006	57563		NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
209724	chr7	87058921	87060120	+	0	NA	5' UTR (NM_001142749, exon 1 of 22)	5' UTR (NM_001142749, exon 1 of 22)	134	NM_001142749	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
28871	chr10	62694271	62695030	+	0	NA	Intergenic	Intergenic	-110070	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
35562	chr11	1661301	1661500	+	0	NA	Intergenic	Intergenic	-4197	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
138732	chr2	213240151	213240450	+	0	NA	Intergenic	Intergenic	43909	NR_161186	100130451		NR_144752		SPAG16-DT	-	SPAG16 divergent transcript	ncRNA
18250	chr1	161057951	161058830	+	0	NA	intron (NM_001025598, intron 2 of 11)	AluSz|SINE|Alu	11501	NM_181720	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
133083	chr2	112437621	112437880	+	0	NA	Intergenic	Intergenic	-4105	NM_001164463	727851		NM_001164463	ENSG00000169629	RGPD8	RANBP2L1|RGP8|RanBP2alpha	RANBP2 like and GRIP domain containing 8	protein-coding
34624	chr10	133289201	133289600	+	0	NA	intron (NM_001256618, intron 8 of 16)	intron (NM_001256618, intron 8 of 16)	-12532	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
143594	chr20	31693351	31694000	+	0	NA	intron (NR_134257, intron 1 of 2)	AluJr|SINE|Alu	-27832	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
224361	chr9	7536471	7536630	+	0	NA	Intergenic	Intergenic	263228	NM_033428	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
50062	chr12	44752821	44753280	+	0	NA	intron (NM_001145108, intron 9 of 19)	L2a|LINE|L2	122611	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
97431	chr17	43530201	43530600	+	0	NA	promoter-TSS (NM_001261439)	promoter-TSS (NM_001261439)	35	NM_001261439	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
80422	chr16	2628971	2629130	+	0	NA	non-coding (NR_015441, exon 4 of 4)	non-coding (NR_015441, exon 4 of 4)	-9932	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
28178	chr10	43846321	43846830	+	0	NA	intron (NR_033923, intron 2 of 2)	intron (NR_033923, intron 2 of 2)	1269	NR_033923	414260		NR_033923	ENSG00000226808	LINC00619	C10orf136|bA168P8.1	long intergenic non-protein coding RNA 619	ncRNA
217255	chr8	27309771	27310600	+	0	NA	intron (NM_171982, intron 1 of 5)	intron (NM_171982, intron 1 of 5)	1087	NM_001362813	23087		NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
142745	chr20	10432871	10434600	+	0	NA	intron (NM_170784, intron 1 of 5)	CpG	487	NR_072977	8195		NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	MKKS centrosomal shuttling protein	protein-coding
24519	chr1	244815671	244815900	+	0	NA	Intergenic	MER41A|LTR|ERV1	-19521	NM_001312871	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
114762	chr19	13672521	13672780	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-59102	NM_001320566	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
26087	chr10	13160201	13160400	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1258	NM_182751	55388		NM_018518	ENSG00000065328	MCM10	CNA43|DNA43|IMD80|PRO2249	minichromosome maintenance 10 replication initiation factor	protein-coding
15270	chr1	149692771	149693480	+	0	NA	Intergenic	Intergenic	-7979	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
213816	chr7	141072401	141072700	+	0	NA	Intergenic	Intergenic	-1514	NM_001195278	100507421		NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding
157320	chr22	44617751	44617850	+	0	NA	intron (NR_044991, intron 3 of 4)	(CA)n|Simple_repeat|Simple_repeat	7619	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
144412	chr20	35294971	35295330	+	0	NA	Intergenic	AluJr|SINE|Alu	-2725	NM_178468	128876		NM_178468	ENSG00000125998	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83 member C	protein-coding
98837	chr17	48427601	48428300	+	0	NA	intron (NM_001075099, intron 1 of 12)	intron (NM_001075099, intron 1 of 12)	2264	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
160010	chr3	18392471	18392630	+	0	NA	intron (NM_001322873, intron 7 of 10)	(TA)n|Simple_repeat|Simple_repeat	32789	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
168398	chr3	142152421	142152850	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-3091	NM_001375775	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
238051	chrX	135484701	135484900	+	0	NA	Intergenic	Intergenic	-35860	NM_001351601	203522		NM_182540	ENSG00000165359	INTS6L	DDX26B	integrator complex subunit 6 like	protein-coding
234911	chrX	34253301	34253500	+	0	NA	Intergenic	L1PA2|LINE|L1	-121070	NM_203408	158724		NM_203408	ENSG00000185448	FAM47A	-	family with sequence similarity 47 member A	protein-coding
99780	chr17	51146101	51146300	+	0	NA	Intergenic	AluSz|SINE|Alu	-7359	NM_001018136	654364		NM_001018136	ENSG00000011052	NME1-NME2	NM23-LV|NMELV	NME1-NME2 readthrough	protein-coding
103030	chr17	77088251	77089480	+	0	NA	promoter-TSS (NR_003013)	promoter-TSS (NR_003013)	180	NM_001204410	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
120101	chr19	42134721	42135400	+	0	NA	intron (NR_038332, intron 2 of 2)	intron (NR_038332, intron 2 of 2)	-1547	NR_036208	100422980		NR_036208	ENSG00000266226	MIR4323	-	microRNA 4323	ncRNA
128660	chr2	61451171	61451530	+	0	NA	intron (NM_014709, intron 1 of 79)	intron (NM_014709, intron 1 of 79)	19737	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
136938	chr2	190149171	190149330	+	0	NA	promoter-TSS (NM_001042520)	promoter-TSS (NM_001042520)	-996	NM_001042520	84281		NM_032321	ENSG00000187699	C2orf88	smAKAP	chromosome 2 open reading frame 88	protein-coding
213531	chr7	139085151	139085900	+	0	NA	intron (NM_020119, intron 2 of 12)	intron (NM_020119, intron 2 of 12)	24195	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
167953	chr3	136545771	136546130	+	0	NA	intron (NM_005862, intron 5 of 33)	intron (NM_005862, intron 5 of 33)	206428	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
110154	chr19	1628871	1629530	+	0	NA	intron (NM_003200, intron 5 of 18)	intron (NM_003200, intron 5 of 18)	23415	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
69350	chr14	93972571	93973130	+	0	NA	intron (NM_001202429, intron 1 of 9)	intron (NM_001202429, intron 1 of 9)	3720	NM_001202429	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
13683	chr1	116608971	116609130	+	0	NA	intron (NM_001007237, intron 4 of 10)	intron (NM_001007237, intron 4 of 10)	-37957	NM_001144822	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
25158	chr10	5094401	5094830	+	0	NA	intron (NM_001253909, intron 1 of 2)	intron (NM_001253909, intron 1 of 2)	201	NM_001253909	8644		NM_003739	ENSG00000196139	AKR1C3	DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS	aldo-keto reductase family 1 member C3	protein-coding
228166	chr9	97012321	97013000	+	0	NA	intron (NM_001355229, intron 1 of 4)	intron (NM_001355229, intron 1 of 4)	945	NM_001355229	84278		NM_001355228	ENSG00000290770	MFSD14CP	HIATL2|MFSD14C	major facilitator superfamily domain containing 14C, pseudogene	pseudo
183464	chr5	79243701	79244880	+	0	NA	intron (NM_152405, intron 1 of 10)	AluSx|SINE|Alu	8159	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
121519	chr19	47220801	47221250	+	0	NA	3' UTR (NM_001127242, exon 2 of 2)	3' UTR (NM_001127242, exon 2 of 2)	-5917	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
82950	chr16	21875321	21875580	+	0	NA	Intergenic	L2a|LINE|L2	-8715	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
172131	chr4	1187071	1187850	+	0	NA	intron (NM_001199021, intron 1 of 7)	L1MB3|LINE|L1	-14249	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
916	chr1	1701271	1701630	+	0	NA	TTS (NM_024011)	TTS (NM_024011)	1511	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
27477	chr10	32049651	32049950	+	0	NA	intron (NM_004521, intron 1 of 25)	L2a|LINE|L2	6625	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
49734	chr12	31590771	31591530	+	0	NA	promoter-TSS (NM_001308339)	promoter-TSS (NM_001308339)	-14	NM_001366891	160518		NM_144973	ENSG00000170456	DENND5B	-	DENN domain containing 5B	protein-coding
164161	chr3	56777701	56778450	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-2358	NM_001377413	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
94207	chr17	28600871	28601030	+	0	NA	intron (NR_040012, intron 2 of 2)	AluJo|SINE|Alu	1817	NR_040012	100506436		NR_040012		SPAG5-AS1	-	SPAG5 antisense RNA 1	ncRNA
151824	chr22	18409071	18410350	+	0	NA	Intergenic	AluJr|SINE|Alu	-11674	NR_165629	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
68302	chr14	77269571	77270050	+	0	NA	intron (NM_021257, intron 1 of 3)	(C)n|Simple_repeat|Simple_repeat	1502	NM_021257	58157		NM_021257	ENSG00000165553	NGB	-	neuroglobin	protein-coding
187777	chr5	146039601	146039800	+	0	NA	intron (NM_152550, intron 5 of 9)	L1ME3D|LINE|L1	65877	NM_001029869	153770		NM_001029869	ENSG00000173261	PLAC8L1	-	PLAC8 like 1	protein-coding
128589	chr2	60926271	60926630	+	0	NA	3' UTR (NM_002908, exon 11 of 11)	3' UTR (NM_002908, exon 11 of 11)	44876	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
167603	chr3	129571101	129571500	+	0	NA	exon (NM_015103, exon 18 of 36)	exon (NM_015103, exon 18 of 36)	22915	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
133389	chr2	118196601	118196800	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	-10314	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
203387	chr6	170555471	170555630	+	0	NA	intron (NM_001172085, intron 1 of 6)	intron (NM_001172085, intron 1 of 6)	1181	NM_003194	6908		NM_003194	ENSG00000112592	TBP	GTF2D|GTF2D1|HDL4|SCA17|TBP1|TFIID	TATA-box binding protein	protein-coding
25851	chr10	11234351	11235280	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	69785	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
219175	chr8	66534821	66536780	+	0	NA	Intergenic	Intergenic	42234	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
21859	chr1	207499371	207499800	+	0	NA	intron (NM_000651, intron 1 of 46)	L1MCa|LINE|L1	3428	NM_000651	1378		NM_000573	ENSG00000203710	CR1	C3BR|C4BR|CD35|KN	complement C3b/C4b receptor 1 (Knops blood group)	protein-coding
34977	chr11	504151	504930	+	0	NA	intron (NM_203389, intron 1 of 9).2	CpG	2228	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
156056	chr22	39987171	39987600	+	0	NA	Intergenic	Intergenic	-7569	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
68971	chr14	91447651	91447950	+	0	NA	Intergenic	AluJb|SINE|Alu	-29980	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
147321	chr20	57719821	57720280	+	0	NA	Intergenic	Intergenic	-8514	NM_199171	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
140749	chr2	234486101	234486800	+	0	NA	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	10599	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
178495	chr4	150403071	150403230	+	0	NA	intron (NM_001367550, intron 47 of 56)	intron (NM_001367550, intron 47 of 56)	-175939	NR_149035	729558		NR_149035	ENSG00000249690	LOC729558	-	uncharacterized LOC729558	ncRNA
127152	chr2	37855471	37855630	+	0	NA	intron (NR_110012, intron 2 of 3)	intron (NR_110012, intron 2 of 3)	20313	NR_110012	101929559		NR_110011	ENSG00000237803	PIRAT1	LINC00211|NCRNA00211|PIRAT	PU.1 (SPI1) induced regulator of S100A8 and S100A9 alarmin transcription 1	ncRNA
171698	chr3	197793201	197794480	+	0	NA	intron (NM_001365715, intron 1 of 20)	intron (NM_001365715, intron 1 of 20)	2586	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
190087	chr5	177804401	177804600	+	0	NA	intron (NR_157842, intron 1 of 3)	AluY|SINE|Alu	5007	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
155655	chr22	39011351	39011450	+	0	NA	Intergenic	Intergenic	-2857	NM_014508	27350		NM_014508	ENSG00000244509	APOBEC3C	A3C|APOBEC1L|ARDC2|ARDC4|ARP5|PBI|bK150C2.3	apolipoprotein B mRNA editing enzyme catalytic subunit 3C	protein-coding
126742	chr2	30222051	30222650	+	0	NA	Intergenic	Intergenic	-9184	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
222957	chr8	143174021	143174630	+	0	NA	Intergenic	MER51E|LTR|ERV1	-13671	NM_001130478	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
8792	chr1	42927171	42927730	+	0	NA	intron (NM_006516, intron 9 of 9)	intron (NM_006516, intron 9 of 9)	31418	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
55577	chr12	106301401	106303000	+	0	NA	promoter-TSS (NM_001286262)	promoter-TSS (NM_001286262)	-533	NM_001286262	255394		NM_152772	ENSG00000166046	TCP11L2	-	t-complex 11 like 2	protein-coding
112980	chr19	7867751	7867850	+	0	NA	TTS (NM_001190467)	TTS (NM_001190467)	6590	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
56194	chr12	111444401	111445630	+	0	NA	intron (NM_001291424, intron 1 of 6)	intron (NM_001291424, intron 1 of 6)	10153	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
42257	chr11	68140871	68141250	+	0	NA	Intergenic	MIR|SINE|MIR	-19672	NM_001376220	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
167704	chr3	130757771	130757950	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-11031	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
192206	chr6	17729071	17729230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	22107	NR_134618	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
30077	chr10	73880851	73881450	+	0	NA	Intergenic	Intergenic	-6559	NM_172171	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
60315	chr13	40655271	40655530	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	11241	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
155905	chr22	39547071	39547230	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-14402	NM_194326	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
98014	chr17	45385151	45385860	+	0	NA	Intergenic	Intergenic	24881	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
41520	chr11	66265901	66266130	+	0	NA	intron (NM_001134774, intron 12 of 14)	intron (NM_001134774, intron 12 of 14)	-2624	NM_030981	81876		NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
109749	chr19	1111771	1111930	+	0	NA	intron (NM_001100122, intron 20 of 28).2	intron (NM_001100122, intron 20 of 28).2	7200	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
48659	chr12	10437601	10437930	+	0	NA	Intergenic	Intergenic	-1772	NM_002260	3822		NM_002260	ENSG00000205809	KLRC2	CD159c|NKG2-C|NKG2C	killer cell lectin like receptor C2	protein-coding
37633	chr11	20443701	20443900	+	0	NA	intron (NM_001145166, intron 8 of 13)	intron (NM_001145166, intron 8 of 13)	56084	NM_005788	10196		NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
222607	chr8	141034221	141034950	+	0	NA	Intergenic	Intergenic	-32506	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
68748	chr14	91038421	91038680	+	0	NA	intron (NM_001322228, intron 1 of 15)	MLT2F|LTR|ERVL	21574	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
114566	chr19	12898301	12898500	+	0	NA	TTS (NM_001105578)	TTS (NM_001105578)	7240	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
229144	chr9	114484821	114485880	+	0	NA	intron (NM_015404, intron 1 of 11)	MIRb|SINE|MIR	17865	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
206094	chr7	27198371	27198850	+	0	NA	intron (NM_000522, intron 1 of 1)	intron (NM_000522, intron 1 of 1)	1481	NM_000522	3209		NM_000522	ENSG00000106031	HOXA13	HOX1|HOX1J	homeobox A13	protein-coding
216868	chr8	22624871	22625430	+	0	NA	intron (NR_156436, intron 6 of 9)	intron (NR_156436, intron 6 of 9)	17059	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
117519	chr19	20168471	20168630	+	0	NA	intron (NM_052852, intron 1 of 3)	AluSp|SINE|Alu	1336	NM_052852	90649		NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
157599	chr22	46010501	46011430	+	0	NA	TTS (NR_027240)	TTS (NR_027240)	4349	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
193739	chr6	31261171	31262200	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	10407	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
21696	chr1	206730351	206730650	+	0	NA	intron (NM_032960, intron 5 of 9)	intron (NM_032960, intron 5 of 9)	40103	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
173214	chr4	6891671	6892830	+	0	NA	Intergenic	Intergenic	-17194	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
194259	chr6	32580471	32581030	+	0	NA	exon (NM_001243965, exon 6 of 8)	exon (NM_001243965, exon 6 of 8)	9086	NM_002124	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
107003	chr18	32056121	32056380	+	0	NA	intron (NM_017831, intron 4 of 5)	intron (NM_017831, intron 4 of 5)	-35624	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
155360	chr22	38285371	38285530	+	0	NA	Intergenic	Intergenic	-12440	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
88153	chr16	81667701	81668030	+	0	NA	TTS (NR_045112)	TTS (NR_045112)	2511	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
200116	chr6	130209621	130209880	+	0	NA	intron (NM_001258275, intron 6 of 13)	intron (NM_001258275, intron 6 of 13)	6135	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
145361	chr20	41152751	41153430	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-15090	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
184718	chr5	109406251	109406550	+	0	NA	intron (NM_014819, intron 1 of 9)	L1ME1|LINE|L1	3574	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
53658	chr12	68367171	68367330	+	0	NA	Intergenic	Intergenic	-34836	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
214189	chr7	148339351	148339680	+	0	NA	intron (NM_014141, intron 20 of 22)	CpG	-251251	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
100610	chr17	63522801	63523550	+	0	NA	promoter-TSS (NM_001278920)	promoter-TSS (NM_001278920)	-183	NM_001278919	81033		NM_030779	ENSG00000173826	KCNH6	ERG-2|ERG2|HERG2|Kv11.2|hERG-2	potassium voltage-gated channel subfamily H member 6	protein-coding
176972	chr4	104494621	104495350	+	0	NA	promoter-TSS (NR_132741)	promoter-TSS (NR_132741)	-91	NM_025212	80319		NM_025212	ENSG00000168772	CXXC4	IDAX	CXXC finger protein 4	protein-coding
12419	chr1	101363851	101364150	+	0	NA	intron (NR_126402, intron 4 of 4)	MIRc|SINE|MIR	40163	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
163630	chr3	52056101	52056800	+	0	NA	5' UTR (NM_001947, exon 1 of 3)	5' UTR (NM_001947, exon 1 of 3)	121	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
103854	chr17	79728071	79729980	+	0	NA	Intergenic	Intergenic	-1918	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
146514	chr20	49912601	49912800	+	0	NA	intron (NM_006038, intron 1 of 2)	intron (NM_006038, intron 1 of 2)	1039	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
118035	chr19	34226251	34226750	+	0	NA	intron (NM_001384431, intron 11 of 11).2	intron (NM_001384431, intron 11 of 11).2	-28054	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
45902	chr11	120339471	120340200	+	0	NA	intron (NM_015313, intron 1 of 40)	intron (NM_015313, intron 1 of 40)	3422	NM_015313	23365		NM_015313	ENSG00000196914	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor 12	protein-coding
79012	chr16	37601	38000	+	0	NA	Intergenic	AluSg|SINE|Alu	14884	NR_130735	100132169		NR_130735	ENSG00000231439	WASIR2	NCRNA00286A	WASH and IL9R antisense RNA 2	ncRNA
78597	chr15	93072751	93073780	+	0	NA	promoter-TSS (NM_001166286)	promoter-TSS (NM_001166286)	-109	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
91692	chr17	6413071	6413450	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	21861	NM_001033054	23746		NM_014336	ENSG00000129221	AIPL1	AIPL2|LCA4	aryl hydrocarbon receptor interacting protein like 1	protein-coding
48896	chr12	12542371	12542530	+	0	NA	intron (NM_030640, intron 1 of 6)	L1MB7|LINE|L1	20413	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
119691	chr19	41103051	41103350	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-11232	NR_135528	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
159611	chr3	15260871	15262330	+	0	NA	intron (NR_046084, intron 2 of 2)	intron (NR_046084, intron 2 of 2)	7416	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
185084	chr5	118990101	118990600	+	0	NA	Intergenic	Intergenic	-1803	NM_173666	285605		NM_173666	ENSG00000169570	DTWD2	-	DTW domain containing 2	protein-coding
111152	chr19	3298171	3298330	+	0	NA	Intergenic	AluSz6|SINE|Alu	-61380	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
126546	chr2	28594271	28595030	+	0	NA	intron (NM_153021, intron 33 of 57)	intron (NM_153021, intron 33 of 57)	28293	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
45371	chr11	118295271	118295430	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-9380	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
230780	chr9	128920751	128921050	+	0	NA	promoter-TSS (NM_001100876)	promoter-TSS (NM_001100876)	-82	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
61085	chr13	48403101	48404280	+	0	NA	intron (NM_000321, intron 17 of 26)	MER5A|DNA|hAT-Charlie	9423	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
41379	chr11	65995401	65995600	+	0	NA	Intergenic	Intergenic	-6579	NM_001143985	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
22494	chr1	221734951	221735050	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	1900	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
232103	chr9	133686771	133686930	+	0	NA	intron (NM_001134707, intron 16 of 20)	intron (NM_001134707, intron 16 of 20)	-29442	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
133555	chr2	121075121	121075550	+	0	NA	Intergenic	Intergenic	209867	NM_014553	29842		NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
128355	chr2	54960301	54960700	+	0	NA	intron (NM_001039753, intron 34 of 40)	intron (NM_001039753, intron 34 of 40)	49772	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
29580	chr10	71712571	71714750	+	0	NA	3' UTR (NM_001168390, exon 2 of 2)	3' UTR (NM_001168390, exon 2 of 2)	6118	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
224848	chr9	27690951	27691050	+	0	NA	Intergenic	L1PA2|LINE|L1	-117134	NM_001256054	203228		NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1	C9orf72-SMCR8 complex subunit	protein-coding
199040	chr6	111462851	111463280	+	0	NA	intron (NM_001286431, intron 3 of 34)	LTR87|LTR|ERVL?	20153	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
236299	chrX	68284601	68284800	+	0	NA	intron (NM_002547, intron 3 of 24)	L1MB7|LINE|L1	148795	NM_002547	4983		NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|MRXSBL|OPN1	oligophrenin 1	protein-coding
65112	chr14	44803451	44803550	+	0	NA	Intergenic	Intergenic	-4374	NR_146457	101927351		NR_146457		LINC02302	-	long intergenic non-protein coding RNA 2302	ncRNA
150822	chr21	44010101	44010930	+	0	NA	Intergenic	LTR24B|LTR|ERV1	-1794	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
106297	chr18	12843371	12843900	+	0	NA	intron (NM_080422, intron 2 of 9)	intron (NM_080422, intron 2 of 9)	-2673	NM_001308287	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
149610	chr21	33362001	33363230	+	0	NA	Intergenic	LTR9D|LTR|ERV1	37645	NM_001384503	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
129994	chr2	74037151	74038100	+	0	NA	intron (NM_001366022, intron 2 of 10)	intron (NM_001366022, intron 2 of 10)	34933	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
161751	chr3	44624451	44625550	+	0	NA	promoter-TSS (NM_001323296)	promoter-TSS (NM_001323296)	-36	NM_001323293	10168		NM_006991	ENSG00000186448	ZNF197	D3S1363E|P18|VHLaK|ZKSCAN9|ZNF166|ZNF20|ZSCAN41	zinc finger protein 197	protein-coding
84365	chr16	30235701	30235900	+	0	NA	intron (NM_001321892, intron 3 of 8)	intron (NM_001321892, intron 3 of 8)	10055	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
202863	chr6	159821271	159821430	+	0	NA	TTS (NM_001271862)	TTS (NM_001271862)	21074	NM_001271862	154197		NM_173516	ENSG00000146453	PNLDC1	HsPNLDC1|SPGF57|Trimmer	PARN like ribonuclease domain containing exonuclease 1	protein-coding
106122	chr18	9210371	9210730	+	0	NA	intron (NM_001204056, intron 4 of 11)	AluSz|SINE|Alu	72987	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
71440	chr14	105681751	105681850	+	0	NA	Intergenic	Intergenic	-8993	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
193601	chr6	30725651	30726030	+	0	NA	TTS (NM_001293216).8	TTS (NM_001293216).8	4202	NM_001293215	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
49970	chr12	42095301	42095500	+	0	NA	intron (NM_173601, intron 7 of 7)	L1MC4a|LINE|L1	49474	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
76154	chr15	72684351	72684650	+	0	NA	intron (NM_001350932, intron 1 of 2)	AluSq2|SINE|Alu	-1679	NR_045565	585		NM_033028	ENSG00000140463	BBS4	-	Bardet-Biedl syndrome 4	protein-coding
90195	chr17	412121	412900	+	0	NA	intron (NM_001013672, intron 1 of 1).2	intron (NM_001013672, intron 1 of 1).2	1513	NR_136407	105371430		NR_136407	ENSG00000241525	LOC105371430	-	uncharacterized LOC105371430	ncRNA
54073	chr12	76042271	76042430	+	0	NA	3' UTR (NM_004537, exon 15 of 15)	3' UTR (NM_004537, exon 15 of 15)	-10574	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
134065	chr2	131501601	131502180	+	0	NA	intron (NR_026922, intron 8 of 17)	intron (NR_026922, intron 8 of 17)	9077	NR_026922	150776		NR_026922	ENSG00000293311	SMPD4BP	-	sphingomyelin phosphodiesterase 4B, pseudogene	pseudo
84390	chr16	30318521	30318980	+	0	NA	intron (NR_002453, intron 1 of 12)	intron (NR_002453, intron 1 of 12)	16624	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
129129	chr2	65284351	65284450	+	0	NA	Intergenic	Intergenic	56569	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
135463	chr2	161278471	161278880	+	0	NA	Intergenic	L1MB8|LINE|L1	-24032	NR_110593	101929512		NR_110593		PSMD14-DT	-	PSMD14 divergent transcript	ncRNA
177443	chr4	112765601	112765830	+	0	NA	intron (NM_001354269, intron 1 of 43)	intron (NM_001354269, intron 1 of 43)	-52282	NM_001127493	287		NM_001148	ENSG00000145362	ANK2	ANK-2|CFAP87|FAP87|LQT4|brank-2	ankyrin 2	protein-coding
200733	chr6	137715451	137716450	+	0	NA	Intergenic	Intergenic	23087	NR_121618	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
185317	chr5	126783671	126784030	+	0	NA	intron (NR_134488, intron 1 of 11)	intron (NR_134488, intron 1 of 11)	6714	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
38480	chr11	45844471	45845530	+	0	NA	Intergenic	Intergenic	-2118	NM_001127457	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
94719	chr17	30716871	30717500	+	0	NA	intron (NR_144394, intron 1 of 8)	intron (NR_144394, intron 1 of 8)	7577	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
193951	chr6	31679271	31679700	+	0	NA	intron (NM_025262, intron 1 of 2).5	intron (NM_025262, intron 1 of 2).5	888	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
137231	chr2	191637621	191638450	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-40037	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
216437	chr8	19463521	19463980	+	0	NA	intron (NR_148900, intron 3 of 9)	intron (NR_148900, intron 3 of 9)	138795	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
54286	chr12	89244471	89245900	+	0	NA	Intergenic	Intergenic	107316	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
121471	chr19	47100221	47100580	+	0	NA	intron (NM_015168, intron 2 of 14)	intron (NM_015168, intron 2 of 14)	13376	NM_015168	23211		NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
90408	chr17	1328501	1328700	+	0	NA	Intergenic	Intergenic	48938	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
48351	chr12	9364401	9365280	+	0	NA	Intergenic	MER101B|LTR|ERV1	-2624	NR_120479	101930452		NR_120479	ENSG00000260423	LINC02367	-	long intergenic non-protein coding RNA 2367	ncRNA
90160	chr17	213351	213450	+	0	NA	3' UTR (NM_001190411, exon 9 of 9)	3' UTR (NM_001190411, exon 9 of 9)	-26149	NR_104420	100506371		NR_104420		LINC02091	-	long intergenic non-protein coding RNA 2091	ncRNA
77505	chr15	84650951	84651680	+	0	NA	intron (NR_130946, intron 3 of 7)	AluJb|SINE|Alu	2931	NR_130944	84942		NM_032856	ENSG00000177082	WDR73	GAMOS|GAMOS1|HSPC264	WD repeat domain 73	protein-coding
216896	chr8	22683871	22684030	+	0	NA	Intergenic	Intergenic	8414	NM_001199880	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
161939	chr3	46109001	46109950	+	0	NA	Intergenic	Intergenic	-23631	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
35766	chr11	2156101	2156900	+	0	NA	intron (NM_001042376, intron 2 of 4)	intron (NM_001042376, intron 2 of 4)	4709	NM_001185097	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
154518	chr22	36027451	36027880	+	0	NA	intron (NM_001349999, intron 1 of 13)	intron (NM_001349999, intron 1 of 13)	1159	NM_001082578	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
114598	chr19	12951201	12951680	+	0	NA	intron (NM_001270363, intron 7 of 7)	AluSp|SINE|Alu	5578	NM_005053	5886		NM_005053	ENSG00000179262	RAD23A	HHR23A|HR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding
237307	chrX	115892971	115893150	+	0	NA	intron (NR_147172, intron 2 of 2)	intron (NR_147172, intron 2 of 2)	52096	NR_147172	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
6203	chr1	27461021	27461500	+	0	NA	intron (NM_006990, intron 1 of 8)	L1MC4|LINE|L1	28907	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
107309	chr18	44887151	44887650	+	0	NA	intron (NM_001379141, intron 3 of 5)	intron (NM_001379141, intron 3 of 5)	82766	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
33352	chr10	117163171	117163980	+	0	NA	intron (NR_121650, intron 1 of 1)	CpG	4199	NR_037436	100500893		NR_037436	ENSG00000266782	MIR3663	-	microRNA 3663	ncRNA
32832	chr10	110013551	110014600	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-5694	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
56002	chr12	110304401	110304600	+	0	NA	intron (NM_170665, intron 5 of 19)	L1MB7|LINE|L1	23253	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
225412	chr9	35058001	35058200	+	0	NA	intron (NM_001354927, intron 15 of 16)	intron (NM_001354927, intron 15 of 16)	14208	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
57145	chr12	121238601	121238950	+	0	NA	3' UTR (NM_001270486, exon 16 of 16)	3' UTR (NM_001270486, exon 16 of 16)	28646	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
186052	chr5	134068471	134068630	+	0	NA	Intergenic	L1MEd|LINE|L1	-46131	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
131881	chr2	98726001	98726650	+	0	NA	exon (NM_012214, exon 2 of 16)	exon (NM_012214, exon 2 of 16)	4807	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
178778	chr4	153450071	153450880	+	0	NA	Intergenic	Intergenic	-15871	NM_015196	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
93251	chr17	17955801	17956800	+	0	NA	intron (NM_001082968, intron 1 of 14)	LTR12C|LTR|ERV1	16100	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
55731	chr12	108313501	108314700	+	0	NA	intron (NM_001142344, intron 1 of 2)	intron (NM_001142344, intron 1 of 2)	6562	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
89277	chr16	88685901	88687100	+	0	NA	promoter-TSS (NM_178310)	promoter-TSS (NM_178310)	7	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
51739	chr12	53230151	53230980	+	0	NA	intron (NM_000966, intron 2 of 9)	intron (NM_000966, intron 2 of 9)	1644	NM_000966	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
50973	chr12	49555971	49556350	+	0	NA	intron (NM_001314030, intron 12 of 14)	intron (NM_001314030, intron 12 of 14)	10279	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
198382	chr6	105560651	105560950	+	0	NA	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	-157718	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
169344	chr3	160225271	160226480	+	0	NA	exon (NM_001168214, exon 1 of 1)	exon (NM_001168214, exon 1 of 1)	453	NM_001168214	401097		NM_001168214	ENSG00000180044	C3orf80	-	chromosome 3 open reading frame 80	protein-coding
953	chr1	1749651	1750030	+	0	NA	Intergenic	Intergenic	-3841	NM_001199787	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
123336	chr19	53772901	53773230	+	0	NA	Intergenic	LTR84b|LTR|ERVL	10721	NR_030222	574500		NR_030222	ENSG00000284362	MIR519A2	MIRN519A-2|MIRN519A2|mir-519a-2	microRNA 519a-2	ncRNA
187799	chr5	146297551	146297660	+	0	NA	Intergenic	AluY|SINE|Alu	-41234	NM_002700	5459		NM_002700	ENSG00000091010	POU4F3	BRN3C|DFNA15|DFNA42|DFNA52	POU class 4 homeobox 3	protein-coding
138536	chr2	207524371	207524850	+	0	NA	Intergenic	Intergenic	-5352	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
193865	chr6	31568421	31569500	+	0	NA	intron (NR_149045, intron 1 of 1)	intron (NR_149045, intron 1 of 1)	-3139	NM_001159740	4049		NM_000595	ENSG00000226979	LTA	LT|TNFB|TNFSF1|TNLG1E	lymphotoxin alpha	protein-coding
51568	chr12	52604751	52605500	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-3662	NM_080747	140807		NM_080747	ENSG00000170486	KRT72	CK-72|K6IRS2|K6irs|K72|KRT6|KRT6IRS2	keratin 72	protein-coding
221255	chr8	122777021	122777280	+	0	NA	Intergenic	AluSz|SINE|Alu	-4505	NM_001362797	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
191312	chr6	6742171	6742330	+	0	NA	Intergenic	AluSq|SINE|Alu	-119424	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
85173	chr16	46815821	46816100	+	0	NA	intron (NM_001001436, intron 2 of 3)	L1MB3|LINE|L1	15088	NR_145837	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
26439	chr10	17249701	17250230	+	0	NA	Intergenic	Intergenic	-19980	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
138811	chr2	216187501	216187900	+	0	NA	intron (NM_021141, intron 16 of 20)	intron (NM_021141, intron 16 of 20)	-29189	NR_037701	150967		NM_001199924	ENSG00000260804	LINC01963	PKI55	long intergenic non-protein coding RNA 1963	ncRNA
200634	chr6	136920251	136920850	+	0	NA	Intergenic	Intergenic	-1751	NM_001008783	340146		NM_001008783	ENSG00000182747	SLC35D3	FRCL1	solute carrier family 35 member D3	protein-coding
8269	chr1	39882921	39883980	+	0	NA	promoter-TSS (NR_132401)	promoter-TSS (NR_132401)	54	NM_017646	54802		NM_017646	ENSG00000043514	TRIT1	COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
113056	chr19	8154901	8155100	+	0	NA	Intergenic	Intergenic	-5408	NM_032447	84467		NM_032447	ENSG00000142449	FBN3	-	fibrillin 3	protein-coding
93771	chr17	20155221	20156680	+	0	NA	promoter-TSS (NM_001243438)	promoter-TSS (NM_001243438)	-122	NM_001033555	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
89757	chr16	89451151	89451650	+	0	NA	intron (NR_110932, intron 2 of 2)	L1MB8|LINE|L1	20482	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109572	chr19	897421	898000	+	0	NA	intron (NM_138774, intron 7 of 7)	intron (NM_138774, intron 7 of 7)	4226	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
225741	chr9	37036751	37038180	+	0	NA	Intergenic	CpG	-3197	NM_001280556	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
131387	chr2	96254851	96255350	+	0	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	10897	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
5472	chr1	25655971	25656130	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	39259	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
201389	chr6	145733671	145734030	+	0	NA	intron (NM_001360071, intron 1 of 4)	intron (NM_001360071, intron 1 of 4)	-1019	NR_038246	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
155113	chr22	37619201	37619400	+	0	NA	intron (NM_001172688, intron 5 of 17)	AluSx3|SINE|Alu	10260	NM_001172688	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
16508	chr1	154906571	154906950	+	0	NA	Intergenic	Intergenic	29959	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
115193	chr19	14458051	14458350	+	0	NA	intron (NM_002741, intron 8 of 21)	intron (NM_002741, intron 8 of 21)	17154	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
110715	chr19	2310621	2311180	+	0	NA	Intergenic	AluY|SINE|Alu	-2746	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
150795	chr21	43893551	43894330	+	0	NA	intron (NM_001369878, intron 1 of 8)	Tigger1|DNA|TcMar-Tigger	-22848	NM_001369880	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
98638	chr17	47813821	47814080	+	0	NA	intron (NM_145798, intron 14 of 22)	intron (NM_145798, intron 14 of 22)	7844	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
140465	chr2	233171851	233172230	+	0	NA	intron (NM_001017915, intron 17 of 26).2	intron (NM_001017915, intron 17 of 26).2	-79531	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
237801	chrX	129928821	129929080	+	0	NA	intron (NM_001166221, intron 13 of 13)	intron (NM_001166221, intron 13 of 13)	22786	NM_006649	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
99491	chr17	50189771	50190630	+	0	NA	intron (NM_000088, intron 35 of 50)	intron (NM_000088, intron 35 of 50)	11431	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
99805	chr17	51427371	51428280	+	0	NA	Intergenic	L2c|LINE|L2	-7602	NR_146897	105371828		NR_146897	ENSG00000267452	LINC02073	-	long intergenic non-protein coding RNA 2073	ncRNA
138317	chr2	203748171	203748330	+	0	NA	Intergenic	Intergenic	41611	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123517	chr19	54220101	54220500	+	0	NA	intron (NR_135496, intron 7 of 13).4	intron (NR_135496, intron 7 of 13).4	2707	NR_135494	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
208319	chr7	66125861	66126530	+	0	NA	intron (NM_001040648, intron 1 of 2)	intron (NM_001040648, intron 1 of 2)	11348	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
92987	chr17	17153451	17153750	+	0	NA	intron (NM_015134, intron 12 of 22)	intron (NM_015134, intron 12 of 22)	52733	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
231030	chr9	129605551	129605850	+	0	NA	Intergenic	AluSz|SINE|Alu	-3184	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
151108	chr21	44868021	44868980	+	0	NA	intron (NM_004339, intron 1 of 5)	L1MC4|LINE|L1	5190	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
188463	chr5	154645401	154645600	+	0	NA	Intergenic	AluSq|SINE|Alu	-37479	NM_001367715	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
126579	chr2	28757421	28757750	+	0	NA	intron (NM_206876, intron 2 of 8)	intron (NM_206876, intron 2 of 8)	5755	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
42531	chr11	71446921	71447200	+	0	NA	intron (NM_001360, intron 2 of 8)	intron (NM_001360, intron 2 of 8)	1333	NM_001163817	1717		NM_001360	ENSG00000172893	DHCR7	SLOS	7-dehydrocholesterol reductase	protein-coding
11062	chr1	85088101	85088300	+	0	NA	intron (NM_001288563, intron 7 of 21)	intron (NM_001288563, intron 7 of 21)	25873	NM_145172	126820		NM_145172	ENSG00000162643	DNAI3	DIC3|NYD-SP29|WDR63	dynein axonemal intermediate chain 3	protein-coding
182599	chr5	66017651	66017950	+	0	NA	intron (NM_001253697, intron 7 of 25)	L1MA4|LINE|L1	-72227	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
123491	chr19	54195471	54195630	+	0	NA	Intergenic	Intergenic	4242	NM_001077446	79042		NM_024075	ENSG00000170892	TSEN34	LENG5|PCH2C|SEN34|SEN34L	tRNA splicing endonuclease subunit 34	protein-coding
140572	chr2	233331201	233332580	+	0	NA	intron (NM_000541, intron 10 of 15)	intron (NM_000541, intron 10 of 15)	-22604	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
93948	chr17	21376901	21377300	+	0	NA	intron (NM_021012, intron 1 of 2)	CpG	743	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
230852	chr9	129110321	129112330	+	0	NA	promoter-TSS (NM_178003)	promoter-TSS (NM_178003)	11	NM_178001	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
82234	chr16	15034351	15034650	+	0	NA	exon (NM_001285444, exon 20 of 22)	exon (NM_001285444, exon 20 of 22)	21574	NM_173474	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
145438	chr20	43470801	43471000	+	0	NA	Intergenic	AluSx1|SINE|Alu	13004	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
7659	chr1	35661071	35661230	+	0	NA	Intergenic	Intergenic	-19624	NM_002794	5690		NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome 20S subunit beta 2	protein-coding
109465	chr19	798601	799810	+	0	NA	intron (NM_031991, intron 1 of 13)	intron (NM_031991, intron 1 of 13)	1753	NM_031990	5725		NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
170914	chr3	194135971	194136480	+	0	NA	promoter-TSS (NM_005524)	promoter-TSS (NM_005524)	77	NM_005524	3280		NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
173800	chr4	17657871	17658230	+	0	NA	intron (NM_015688, intron 10 of 17)	intron (NM_015688, intron 10 of 17)	43409	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
12843	chr1	110063601	110064830	+	0	NA	intron (NM_006492, intron 2 of 3)	MIRc|SINE|MIR	6457	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
237665	chrX	124301451	124301900	+	0	NA	Intergenic	AluSx|SINE|Alu	-30985	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
185536	chr5	131348771	131348930	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA5|LINE|L1	84797	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
104352	chr17	80988071	80988300	+	0	NA	Intergenic	Intergenic	-3656	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
123760	chr19	55086821	55087630	+	0	NA	intron (NM_133180, intron 18 of 19)	CpG-15149	6833	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
215943	chr8	8343151	8343450	+	0	NA	intron (NM_001369759, intron 3 of 5)	L1ME3Cz|LINE|L1	42944	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
185811	chr5	132439651	132440050	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	28921	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
82452	chr16	16364871	16365530	+	0	NA	intron (NR_146336, intron 20 of 34)	CpG	-3676	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
199454	chr6	117605221	117605500	+	0	NA	Intergenic	Intergenic	-2849	NM_020399	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
18934	chr1	168477201	168477600	+	0	NA	intron (NR_125956, intron 4 of 4)	MER66A|LTR|ERV1	18244	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
155736	chr22	39147201	39147930	+	0	NA	intron (NM_001346743, intron 2 of 5)	intron (NM_001346743, intron 2 of 5)	5115	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
55120	chr12	98591221	98591950	+	0	NA	Intergenic	Intergenic	-2040	NM_005888	5250		NM_002635	ENSG00000075415	SLC25A3	OK/SW-cl.48|PHC|PTP|PiC	solute carrier family 25 member 3	protein-coding
204704	chr7	5525801	5527400	+	0	NA	TTS (NM_001101)	TTS (NM_001101)	4001	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
74548	chr15	60518401	60518830	+	0	NA	intron (NM_134260, intron 4 of 11)	MER74A|LTR|ERVL	39437	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
133632	chr2	126776221	126776900	+	0	NA	Intergenic	Intergenic	120402	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
132061	chr2	101240701	101241000	+	0	NA	Intergenic	HERVK11D-int|LTR|ERVK	-12036	NM_017546	55571		NM_017546	ENSG00000158435	CNOT11	C2orf29|C40	CCR4-NOT transcription complex subunit 11	protein-coding
85008	chr16	31492971	31493130	+	0	NA	intron (NM_022744, intron 9 of 12)	intron (NM_022744, intron 9 of 12)	9927	NR_130783	6524		NM_003041	ENSG00000140675	SLC5A2	SGLT2	solute carrier family 5 member 2	protein-coding
165245	chr3	73037151	73037530	+	0	NA	intron (NM_001318025, intron 2 of 7)	intron (NM_001318025, intron 2 of 7)	-24319	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
231217	chr9	129959501	129959700	+	0	NA	intron (NM_001363755, intron 4 of 15)	AluSx|SINE|Alu	83589	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
222650	chr8	141163001	141163200	+	0	NA	intron (NM_014957, intron 9 of 22)	intron (NM_014957, intron 9 of 22)	34511	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
101219	chr17	65588271	65588430	+	0	NA	Intergenic	Intergenic	-26702	NM_004655	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
39693	chr11	61736101	61736300	+	0	NA	intron (NM_006133, intron 12 of 19)	MIRc|SINE|MIR	-16436	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
122156	chr19	48882901	48883600	+	0	NA	intron (NM_003323, intron 11 of 12)	MER41B|LTR|ERV1	10858	NM_014330	23645		NM_014330	ENSG00000087074	PPP1R15A	GADD34	protein phosphatase 1 regulatory subunit 15A	protein-coding
41177	chr11	65624821	65625230	+	0	NA	intron (NM_032223, intron 16 of 34)	intron (NM_032223, intron 16 of 34)	8713	NM_032223	399909		NM_032223	ENSG00000197136	PCNX3	PCNXL3	pecanex 3	protein-coding
80920	chr16	3794071	3794430	+	0	NA	intron (NM_004380, intron 3 of 30)	AluY|SINE|Alu	-76726	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
112687	chr19	7054901	7055480	+	0	NA	Intergenic	Intergenic	3444	NM_001164425	653657		NM_001164425	ENSG00000182315	MBD3L3	-	methyl-CpG binding domain protein 3 like 3	protein-coding
197202	chr6	63596421	63596980	+	0	NA	Intergenic	AluJb|SINE|Alu	24220	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
72872	chr15	40281921	40283650	+	0	NA	promoter-TSS (NM_001190479)	promoter-TSS (NM_001190479)	-199	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
171859	chr4	739371	739530	+	0	NA	intron (NM_001317836, intron 7 of 11)	AluJb|SINE|Alu	33618	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
28361	chr10	47178621	47178880	+	0	NA	Intergenic	MIRb|SINE|MIR	-121447	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
437	chr1	1112301	1112700	+	0	NA	intron (NM_017891, intron 1 of 9)	intron (NM_017891, intron 1 of 9)	3589	NM_017891	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
222900	chr8	142800601	142800800	+	0	NA	Intergenic	Intergenic	-14161	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
206406	chr7	32082311	32082450	+	0	NA	intron (NM_001322058, intron 3 of 17)	L1PA3|LINE|L1	-10944	NM_001191059	5137		NM_005020	ENSG00000154678	PDE1C	DFNA74|Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding
238287	chrX	149479951	149480450	+	0	NA	3' UTR (NM_000202, exon 9 of 9)	3' UTR (NM_000202, exon 9 of 9)	25106	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
108289	chr18	63314221	63314730	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	5294	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
9145	chr1	45510001	45510400	+	0	NA	TTS (NM_181697)	TTS (NM_181697)	9900	NM_001330540	25974		NM_015506	ENSG00000132763	MMACHC	cblC	metabolism of cobalamin associated C	protein-coding
207161	chr7	43594021	43594280	+	0	NA	intron (NM_004760, intron 1 of 6)	AluJr|SINE|Alu	11042	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
210181	chr7	98745771	98746050	+	0	NA	Intergenic	Intergenic	124104	NM_152913	222865		NM_152913	ENSG00000166448	TMEM130	-	transmembrane protein 130	protein-coding
148593	chr21	5106301	5107200	+	0	NA	Intergenic	Intergenic	4690	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
59864	chr13	30616861	30618580	+	0	NA	promoter-TSS (NM_001321532)	promoter-TSS (NM_001321532)	-123	NM_001313893	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
54495	chr12	92084621	92085330	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	56738	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
54801	chr12	94459471	94461100	+	0	NA	promoter-TSS (NM_001042399)	promoter-TSS (NM_001042399)	169	NM_001368040	51134		NM_016122	ENSG00000173588	CEP83	CCDC41|NPHP18|NY-REN-58	centrosomal protein 83	protein-coding
73897	chr15	50678151	50678500	+	0	NA	intron (NR_149152, intron 1 of 38)	intron (NR_149152, intron 1 of 38)	8472	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
47794	chr12	6573721	6574100	+	0	NA	intron (NM_001273, intron 37 of 39)	AluSz|SINE|Alu	-5619	NM_001258308	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
43596	chr11	83162071	83163430	+	0	NA	intron (NM_015885, intron 2 of 15)	intron (NM_015885, intron 2 of 15)	5619	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
142469	chr20	4154921	4155200	+	0	NA	intron (NM_175840, intron 1 of 7)	intron (NM_175840, intron 1 of 7)	6232	NM_175839	54498		NM_019025	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
23737	chr1	232568351	232568450	+	0	NA	intron (NM_001377488, intron 2 of 21)	MER21B|LTR|ERVL	61733	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
13644	chr1	116508271	116509500	+	0	NA	Intergenic	MIRb|SINE|MIR	-30059	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
68124	chr14	75513801	75514700	+	0	NA	Intergenic	Intergenic	-8219	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
152799	chr22	21839001	21839830	+	0	NA	intron (NM_138957, intron 1 of 7)	AluJo|SINE|Alu	28230	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
112719	chr19	7196801	7197500	+	0	NA	intron (NM_001079817, intron 2 of 20)	CpG	97264	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
201083	chr6	142803671	142803830	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	141426	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
204603	chr7	5330821	5331780	+	0	NA	intron (NM_001080495, intron 19 of 29)	L4_B_Mam|LINE|RTE-X	48357	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
128967	chr2	64649371	64650230	+	0	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	4113	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
138084	chr2	202171201	202171600	+	0	NA	intron (NM_001367720, intron 15 of 23)	CpG	-54342	NR_135243	729224		NR_135243	ENSG00000222035	KIAA2012-AS1	-	KIAA2012 antisense RNA 1	ncRNA
87762	chr16	75262871	75263530	+	0	NA	intron (NM_001170720, intron 1 of 7)	intron (NM_001170720, intron 1 of 7)	2807	NM_001170714	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
40227	chr11	63555551	63555850	+	0	NA	intron (NM_017878, intron 3 of 3)	AluJb|SINE|Alu	7679	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
218509	chr8	52884851	52884950	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-54282	NM_005285	2831		NM_005285	ENSG00000288611	NPBWR1	GPR7	neuropeptides B and W receptor 1	protein-coding
86299	chr16	58631471	58631780	+	0	NA	Intergenic	Intergenic	-1799	NR_049763	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
54108	chr12	76126001	76126200	+	0	NA	Intergenic	Intergenic	-41415	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
54460	chr12	91947571	91947730	+	0	NA	Intergenic	Intergenic	194063	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
58231	chr12	128638901	128639100	+	0	NA	intron (NM_001136103, intron 4 of 8)	(GATGAT)n|Simple_repeat|Simple_repeat	184958	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
84020	chr16	29469321	29470100	+	0	NA	Intergenic	Intergenic	-2132	NR_002556	388242		NR_002556	ENSG00000290678	LOC388242	-	SAGA complex associated factor 29 pseudogene	pseudo
19523	chr1	176136801	176137000	+	0	NA	intron (NM_022457, intron 6 of 19)	intron (NM_022457, intron 6 of 19)	70344	NM_001001740	64326		NM_022457	ENSG00000143207	COP1	CFAP78|FAP78|RFWD2|RNF200	COP1 E3 ubiquitin ligase	protein-coding
38266	chr11	39365821	39366080	+	0	NA	Intergenic	L2c|LINE|L2	717092	NR_120553	101928536		NR_120553	ENSG00000254562	LINC01493	-	long intergenic non-protein coding RNA 1493	ncRNA
145867	chr20	45932901	45936380	+	0	NA	promoter-TSS (NM_022104)	promoter-TSS (NM_022104)	-43	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
115342	chr19	15179801	15180200	+	0	NA	promoter-TSS (NR_106853)	promoter-TSS (NR_106853)	-650	NR_106853	102465476		NR_106853	ENSG00000275711	MIR6795	hsa-mir-6795	microRNA 6795	ncRNA
131014	chr2	87925601	87925800	+	0	NA	intron (NM_001024457, intron 1 of 22).2	L1PA8A|LINE|L1	60090	NM_001024457	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
204953	chr7	6350451	6351030	+	0	NA	Intergenic	AluJr|SINE|Alu	-1773	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
70489	chr14	102089451	102089630	+	0	NA	intron (NM_001017963, intron 2 of 11)	intron (NM_001017963, intron 2 of 11)	-2496	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
208013	chr7	55563851	55564480	+	0	NA	intron (NM_001321244, intron 1 of 5)	intron (NM_001321244, intron 1 of 5)	7703	NM_001321250	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
180595	chr5	15105801	15106030	+	0	NA	Intergenic	Intergenic	160645	NR_109944	101929454		NR_109944		LINC02149	-	long intergenic non-protein coding RNA 2149	ncRNA
190251	chr5	178630371	178630800	+	0	NA	Intergenic	Intergenic	-3535	NM_020666	57396		NM_020666	ENSG00000113240	CLK4	-	CDC like kinase 4	protein-coding
153226	chr22	23963051	23963350	+	0	NA	intron (NM_001355, intron 1 of 2)	intron (NM_001355, intron 1 of 2)	1699	NM_001355	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
26933	chr10	26483071	26483330	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	44859	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
54261	chr12	87995671	87995900	+	0	NA	intron (NM_152589, intron 6 of 12)	intron (NM_152589, intron 6 of 12)	33616	NM_152589	160419		NM_152589	ENSG00000165805	C12orf50	-	chromosome 12 open reading frame 50	protein-coding
58430	chr12	131930001	131931200	+	0	NA	intron (NM_025215, intron 2 of 5)	intron (NM_025215, intron 2 of 5)	1324	NM_001002020	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
218284	chr8	42306721	42306980	+	0	NA	intron (NM_001190720, intron 6 of 20)	intron (NM_001190720, intron 6 of 20)	-31644	NM_002690	5423		NM_002690	ENSG00000070501	POLB	-	DNA polymerase beta	protein-coding
59204	chr13	22575151	22575350	+	0	NA	Intergenic	L1PA3|LINE|L1	322931	NR_033774	646201		NR_033774		BASP1P1	-	BASP1 pseudogene 1	pseudo
88213	chr16	81834171	81835080	+	0	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	55334	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
187508	chr5	142356471	142358600	+	0	NA	intron (NR_120664, intron 3 of 3)	MIRb|SINE|MIR	32242	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
13145	chr1	111687251	111687800	+	0	NA	intron (NM_001370217, intron 1 of 7)	L1ME1|LINE|L1	22731	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
132684	chr2	108855351	108855530	+	0	NA	intron (NM_001351549, intron 12 of 13)	intron (NM_001351549, intron 12 of 13)	68669	NR_147236	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
201761	chr6	149943471	149944150	+	0	NA	intron (NM_025217, intron 1 of 4)	intron (NM_025217, intron 1 of 4)	1796	NM_025217	80328		NM_025217	ENSG00000131015	ULBP2	ALCAN-alpha|N2DL2|NKG2DL2|RAET1H|RAET1L	UL16 binding protein 2	protein-coding
76722	chr15	76065271	76065630	+	0	NA	intron (NM_152335, intron 1 of 10)	L2|LINE|L2	5465	NM_152335	123591		NM_152335	ENSG00000169758	TMEM266	C15orf27|HVRP1|HsHVRP1|hTMEM266	transmembrane protein 266	protein-coding
68625	chr14	89701271	89702350	+	0	NA	Intergenic	CpG	-82645	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
29059	chr10	67879451	67880200	+	0	NA	Intergenic	AluSg|SINE|Alu	-4831	NM_012238	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
34236	chr10	130136001	130137430	+	0	NA	intron (NM_001199868, intron 1 of 11)	CpG	306	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
50479	chr12	47777801	47778430	+	0	NA	intron (NM_017842, intron 1 of 2)	intron (NM_017842, intron 1 of 2)	4877	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
197028	chr6	53337071	53337680	+	0	NA	non-coding (NR_046241, exon 1 of 1)	non-coding (NR_046241, exon 1 of 1)	242	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
10064	chr1	58751071	58751230	+	0	NA	Intergenic	Intergenic	32897	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
211214	chr7	102627951	102628350	+	0	NA	Intergenic	AluSz|SINE|Alu	-11392	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
201490	chr6	148972051	148972750	+	0	NA	intron (NM_005715, intron 5 of 7)	intron (NM_005715, intron 5 of 7)	-7716	NR_038408	100128176		NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA
138805	chr2	216147071	216147230	+	0	NA	intron (NM_021141, intron 13 of 20)	L2a|LINE|L2	37802	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
80656	chr16	3007971	3009000	+	0	NA	Intergenic	Intergenic	-4438	NM_020982	9080		NM_020982	ENSG00000213937	CLDN9	DFNB116	claudin 9	protein-coding
147406	chr20	58850551	58851450	+	0	NA	promoter-TSS (NR_002785)	promoter-TSS (NR_002785)	-97	NR_002785	149775		NR_002785	ENSG00000235590	GNAS-AS1	GNAS-AS|GNAS1AS|GNASAS|NCRNA00075|NESP-AS|NESPAS|SANG	GNAS antisense RNA 1	ncRNA
35823	chr11	2265501	2266900	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	4388	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
202613	chr6	158734301	158735100	+	0	NA	intron (NM_001318745, intron 8 of 14)	L2a|LINE|L2	30053	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
35992	chr11	2883901	2884750	+	0	NA	intron (NM_001362475, intron 2 of 3)	CpG-3915	1440	NM_000076	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
114709	chr19	13154401	13155600	+	0	NA	TTS (NM_004907)	TTS (NM_004907)	4589	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
119538	chr19	40588271	40588430	+	0	NA	intron (NM_138392, intron 13 of 17)	L2a|LINE|L2	-4816	NM_003573	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
198154	chr6	90610671	90611630	+	0	NA	Intergenic	CpG	-24078	NM_145332	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
38806	chr11	47287021	47287700	+	0	NA	intron (NM_001376662, intron 15 of 30)	intron (NM_001376662, intron 15 of 30)	-15250	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
18047	chr1	160620601	160621000	+	0	NA	intron (NM_003037, intron 4 of 6)	MER3|DNA|hAT-Charlie	26244	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
138661	chr2	212911101	212911300	+	0	NA	Intergenic	Intergenic	-15057	NR_039935	100616267		NR_039935	ENSG00000266354	MIR4776-1	mir-4776-1	microRNA 4776-1	ncRNA
130100	chr2	74517271	74517700	+	0	NA	TTS (NM_016170)	TTS (NM_016170)	3035	NM_016170	3196		NM_001534	ENSG00000115297	TLX2	HOX11L1|NCX	T cell leukemia homeobox 2	protein-coding
218330	chr8	42799551	42799850	+	0	NA	Intergenic	L1MEd|LINE|L1	-30914	NM_001199279	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
146161	chr20	48724051	48724350	+	0	NA	intron (NM_020820, intron 5 of 39)	MIR|SINE|MIR	103799	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
111017	chr19	3056001	3056300	+	0	NA	intron (NM_198969, intron 4 of 6)	intron (NM_198969, intron 4 of 6)	6345	NM_001130	166		NM_001130	ENSG00000104964	TLE5	AES|AES-1|AES-2|ESP1|GRG|GRG5|Grg-5	TLE family member 5, transcriptional modulator	protein-coding
151097	chr21	44847871	44848380	+	0	NA	Intergenic	AluSx|SINE|Alu	25565	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
132783	chr2	109922071	109922230	+	0	NA	intron (NR_038099, intron 8 of 8)	intron (NR_038099, intron 8 of 8)	23459	NM_001371340	100288695		NM_001205288	ENSG00000256671	LIMS4	LIMS3L	LIM zinc finger domain containing 4	protein-coding
230606	chr9	128606421	128606950	+	0	NA	intron (NM_001375310, intron 31 of 57)	AluSp|SINE|Alu	50165	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
65434	chr14	51242571	51243230	+	0	NA	intron (NM_030755, intron 1 of 7)	intron (NM_030755, intron 1 of 7)	2653	NM_030755	81542		NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
54592	chr12	92463251	92463350	+	0	NA	Intergenic	MIRc|SINE|MIR	-3379	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
124078	chr19	55621451	55621900	+	0	NA	3' UTR (NM_203374, exon 2 of 2)	3' UTR (NM_203374, exon 2 of 2)	2891	NM_203374	147808		NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
231503	chr9	131400001	131400230	+	0	NA	intron (NM_013318, intron 1 of 31)	AluJb|SINE|Alu	6029	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
212261	chr7	122143201	122143400	+	0	NA	intron (NM_005763, intron 1 of 23)	intron (NM_005763, intron 1 of 23)	949	NM_005763	10157		NM_005763	ENSG00000008311	AASS	LKR/SDH|LKRSDH|LORSDH	aminoadipate-semialdehyde synthase	protein-coding
78749	chr15	98881621	98881900	+	0	NA	intron (NM_000875, intron 2 of 20)	MIRb|SINE|MIR	97334	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
193615	chr6	30740071	30740630	+	0	NA	intron (NM_001318875, intron 6 of 11).2	intron (NM_001318875, intron 6 of 11).2	2337	NM_005803	10211		NM_005803	ENSG00000137312	FLOT1	-	flotillin 1	protein-coding
108504	chr18	74113771	74113930	+	0	NA	intron (NM_001142958, intron 8 of 9)	intron (NM_001142958, intron 8 of 9)	33984	NM_152676	201456		NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
228050	chr9	96023701	96024080	+	0	NA	intron (NM_001375291, intron 18 of 18)	intron (NM_001375291, intron 18 of 18)	-2079	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
224910	chr9	32553321	32553580	+	0	NA	promoter-TSS (NM_001195622)	promoter-TSS (NM_001195622)	-822	NM_001195622	10210		NM_005802	ENSG00000197579	TOPORS	LUN|P53BP3|RP31|TP53BPL	TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase	protein-coding
112552	chr19	6543601	6544100	+	0	NA	Intergenic	Intergenic	12824	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
143045	chr20	21314971	21315330	+	0	NA	intron (NM_001317960, intron 1 of 29)	MER70A|LTR|ERVL	11652	NM_001317960	22803		NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
24331	chr1	239308851	239308950	+	0	NA	Intergenic	Intergenic	-77668	NM_001375980	1131		NM_000740	ENSG00000133019	CHRM3	EGBRS|HM3|PBS|m3AChR	cholinergic receptor muscarinic 3	protein-coding
205923	chr7	25854671	25855050	+	0	NA	Intergenic	Intergenic	-64741	NR_157808	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
19901	chr1	183957771	183958130	+	0	NA	intron (NM_015101, intron 6 of 11)	intron (NM_015101, intron 6 of 11)	79778	NM_015101	23127		NM_015101	ENSG00000198756	COLGALT2	C1orf17|ColGalT 2|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
118087	chr19	34366701	34367780	+	0	NA	intron (NM_001184722, intron 4 of 17)	intron (NM_001184722, intron 4 of 17)	2044	NM_000175	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
65252	chr14	49902501	49903130	+	0	NA	Intergenic	AluSx1|SINE|Alu	9733	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
166412	chr3	113703721	113704180	+	0	NA	Intergenic	AluSc8|SINE|Alu	-7308	NM_001009899	205717		NM_001009899	ENSG00000176542	USF3	KIAA2018	upstream transcription factor family member 3	protein-coding
202714	chr6	158849621	158851500	+	0	NA	intron (NR_028496, intron 2 of 2)	intron (NR_028496, intron 2 of 2)	7072	NR_028496	202459		NM_145303	ENSG00000293101	OSTCP1	DC2L|OSTCL	oligosaccharyltransferase complex subunit pseudogene 1	pseudo
14964	chr1	147931971	147932900	+	0	NA	intron (NM_016334, intron 1 of 13)	intron (NM_016334, intron 1 of 13)	4015	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
230956	chr9	129428121	129428600	+	0	NA	Intergenic	Intergenic	-60300	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
97954	chr17	45232701	45233250	+	0	NA	intron (NM_005892, intron 3 of 26)	intron (NM_005892, intron 3 of 26)	11090	NM_005892	752		NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin like 1	protein-coding
235518	chrX	47196221	47196830	+	0	NA	intron (NM_003334, intron 1 of 25)	intron (NM_003334, intron 1 of 25)	2696	NM_003334	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
41717	chr11	66654071	66654230	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluJr|SINE|Alu	15447	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
35781	chr11	2167951	2168050	+	0	NA	intron (NM_000360, intron 4 of 12)	intron (NM_000360, intron 4 of 12)	3815	NM_199293	7054		NM_000360	ENSG00000180176	TH	DYT14|DYT5b|TYH	tyrosine hydroxylase	protein-coding
176849	chr4	102594051	102594500	+	0	NA	intron (NM_001382625, intron 13 of 24)	intron (NM_001382625, intron 13 of 24)	-91789	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
31789	chr10	98269751	98269850	+	0	NA	Intergenic	Intergenic	-1606	NM_032211	84171		NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
19372	chr1	173952971	173953330	+	0	NA	intron (NM_172071, intron 13 of 19)	intron (NM_172071, intron 13 of 19)	-35823	NM_001365052	462		NM_000488	ENSG00000117601	SERPINC1	AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7	serpin family C member 1	protein-coding
193488	chr6	30549101	30550300	+	0	NA	intron (NM_005275, intron 8 of 11)	L2a|LINE|L2	-7009	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
156160	chr22	40208221	40208680	+	0	NA	intron (NM_015088, intron 1 of 20)	L1ME3E|LINE|L1	30525	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
52882	chr12	57195951	57196250	+	0	NA	exon (NM_002332, exon 55 of 89)	exon (NM_002332, exon 55 of 89)	1596	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
7344	chr1	32755451	32756080	+	0	NA	intron (NM_001369553, intron 1 of 6)	intron (NM_001369553, intron 1 of 6)	1766	NM_001369553	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
36424	chr11	4185671	4185830	+	0	NA	Intergenic	Intergenic	-1402	NR_047550	100506082		NR_047550	ENSG00000254480	LINC02749	-	long intergenic non-protein coding RNA 2749	ncRNA
124934	chr2	8574201	8574730	+	0	NA	intron (NR_110257, intron 4 of 5)	intron (NR_110257, intron 4 of 5)	9327	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
68272	chr14	77052771	77054030	+	0	NA	intron (NR_110554, intron 1 of 3)	intron (NR_110554, intron 1 of 3)	12351	NR_110554	283575		NR_110554	ENSG00000246548	LINC02288	-	long intergenic non-protein coding RNA 2288	ncRNA
94377	chr17	28929421	28930480	+	0	NA	intron (NM_020889, intron 2 of 8)	intron (NM_020889, intron 2 of 8)	3675	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
189163	chr5	171395371	171396250	+	0	NA	intron (NM_002520, intron 6 of 10)	intron (NM_002520, intron 6 of 10)	7961	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
216485	chr8	20099021	20099280	+	0	NA	Intergenic	AluSc8|SINE|Alu	83986	NM_001142324	6570		NM_003053	ENSG00000036565	SLC18A1	CGAT|VAT1|VMAT1	solute carrier family 18 member A1	protein-coding
159605	chr3	15217121	15217600	+	0	NA	intron (NR_164767, intron 3 of 20)	intron (NR_164767, intron 3 of 20)	11114	NM_001376089	23473		NM_014296	ENSG00000131375	CAPN7	CALPAIN7|PALBH	calpain 7	protein-coding
76214	chr15	73911171	73911400	+	0	NA	Intergenic	L1M6|LINE|L1	-15177	NM_005576	4016		NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase like 1	protein-coding
158394	chr22	50514721	50514980	+	0	NA	intron (NM_014551, intron 1 of 8)	intron (NM_014551, intron 1 of 8)	6626	NM_001185011	29781		NM_014551	ENSG00000025770	NCAPH2	CAPH2	non-SMC condensin II complex subunit H2	protein-coding
100860	chr17	64240051	64240350	+	0	NA	intron (NM_001288732, intron 1 of 11)	intron (NM_001288732, intron 1 of 11)	-9466	NM_001288733	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
118314	chr19	35509021	35509700	+	0	NA	intron (NM_001126057, intron 7 of 10)	intron (NM_001126057, intron 7 of 10)	1110	NR_147958	93099		NM_033317	ENSG00000161249	DMKN	UNQ729|ZD52F10	dermokine	protein-coding
117880	chr19	32673071	32673430	+	0	NA	intron (NM_032139, intron 1 of 28)	intron (NM_032139, intron 1 of 28)	1930	NM_032139	84079		NM_032139	ENSG00000105186	ANKRD27	PP12899|VARP	ankyrin repeat domain 27	protein-coding
227857	chr9	93578321	93579350	+	0	NA	intron (NM_005392, intron 1 of 21)	intron (NM_005392, intron 1 of 21)	2251	NM_005392	5253		NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding
15300	chr1	149847571	149848050	+	0	NA	Intergenic	AluSq|SINE|Alu	2963	NR_036461	337873		NR_036461	ENSG00000261716	H2BC20P	H2B/t|HIST2H2BC|HIST2H2BD|LETN	H2B clustered histone 20, pseudogene	pseudo
234360	chrX	15703821	15704100	+	0	NA	TTS (NR_026551)	TTS (NR_026551)	28502	NR_160544	114004397		NR_160544		CA5BP1-CA5B	-	CA5BP1-CA5B readthrough	ncRNA
114631	chr19	12989171	12989600	+	0	NA	Intergenic	Intergenic	-6090	NM_002501	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
67163	chr14	68785701	68786520	+	0	NA	Intergenic	Intergenic	6957	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
102730	chr17	76207771	76208530	+	0	NA	intron (NM_052916, intron 2 of 18)	AluJr|SINE|Alu	32343	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
159955	chr3	17234451	17234550	+	0	NA	intron (NM_001349084, intron 17 of 22)	intron (NM_001349084, intron 17 of 22)	301304	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
111384	chr19	3723801	3724630	+	0	NA	intron (NM_001267561, intron 1 of 20)	AluY|SINE|Alu	2478	NM_001267561	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
16192	chr1	153805051	153806380	+	0	NA	3' UTR (NM_020699, exon 11 of 11)	3' UTR (NM_020699, exon 11 of 11)	11768	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
216618	chr8	22092571	22093130	+	0	NA	intron (NR_148728, intron 2 of 19)	L2a|LINE|L2	3696	NR_148727	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
79343	chr16	586271	586430	+	0	NA	Intergenic	Intergenic	-3007	NM_001172663	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
161828	chr3	45655801	45656000	+	0	NA	intron (NM_014240, intron 2 of 7)	intron (NM_014240, intron 2 of 7)	32982	NR_033947	644714		NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
41925	chr11	67291051	67291830	+	0	NA	intron (NM_207354, intron 3 of 14)	intron (NM_207354, intron 3 of 14)	2137	NM_001347901	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
74756	chr15	63226571	63228680	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	38019	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
183179	chr5	75513751	75514050	+	0	NA	intron (NM_001345921, intron 1 of 13)	intron (NM_001345921, intron 1 of 13)	-1919	NM_001130105	10087		NM_005713	ENSG00000113163	CERT1	CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11	ceramide transporter 1	protein-coding
42040	chr11	67446121	67447000	+	0	NA	Intergenic	LTR8|LTR|ERV1	-2739	NM_001018070	57175		NM_020441	ENSG00000172725	CORO1B	CORONIN-2	coronin 1B	protein-coding
14328	chr1	143902521	143902930	+	0	NA	3' UTR (NM_001355409, exon 2 of 2)	3' UTR (NM_001355409, exon 2 of 2)	1925	NR_160913	338391		NR_160913		H2BP2	HIST2H2BB	H2B histone pseudogene 2	pseudo
2509	chr1	9698751	9699050	+	0	NA	intron (NM_001350234, intron 2 of 23)	intron (NM_001350234, intron 2 of 23)	7433	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
186117	chr5	134140251	134141900	+	0	NA	intron (NM_001346425, intron 6 of 10)	intron (NM_001346425, intron 6 of 10)	17457	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
83039	chr16	22315971	22316130	+	0	NA	intron (NM_018119, intron 9 of 20).2	intron (NM_018119, intron 9 of 20).2	18641	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
99265	chr17	49737601	49738000	+	0	NA	intron (NM_030802, intron 1 of 7)	MIR1_Amn|SINE|MIR	26331	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
93111	chr17	17686771	17687300	+	0	NA	intron (NM_030665, intron 1 of 5)	AluSg7|SINE|Alu	5577	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
12913	chr1	110630571	110632450	+	0	NA	promoter-TSS (NM_001204269)	promoter-TSS (NM_001204269)	-70	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
149860	chr21	35226851	35227730	+	0	NA	Intergenic	Intergenic	-177988	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
159861	chr3	16665471	16665630	+	0	NA	Intergenic	LTR72|LTR|ERV1	-60127	NM_001351	1618		NM_001351	ENSG00000092345	DAZL	DAZH|DAZL1|DAZLA|SPGYLA	deleted in azoospermia like	protein-coding
66833	chr14	64812471	64812700	+	0	NA	intron (NM_001355436, intron 2 of 35)	intron (NM_001355436, intron 2 of 35)	10795	NM_001024858	6710		NM_000347	ENSG00000070182	SPTB	EL3|HS2|HSPTB1|SPH2	spectrin beta, erythrocytic	protein-coding
123203	chr19	52713201	52713400	+	0	NA	intron (NM_001161501, intron 4 of 4)	intron (NM_001161501, intron 4 of 4)	16582	NM_030972	81856		NM_030972	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
17658	chr1	157505671	157505850	+	0	NA	Intergenic	Intergenic	46755	NM_031281	83416		NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
82555	chr16	18561601	18562700	+	0	NA	promoter-TSS (NM_001004060)	promoter-TSS (NM_001004060)	-38	NM_001004060	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
105322	chr17	82586221	82586880	+	0	NA	intron (NM_004514, intron 7 of 8)	intron (NM_004514, intron 7 of 8)	61894	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
9023	chr1	44746271	44746630	+	0	NA	promoter-TSS (NM_001297656)	promoter-TSS (NM_001297656)	56	NM_001297656	11004		NM_006845	ENSG00000142945	KIF2C	CT139|KNSL6|MCAK	kinesin family member 2C	protein-coding
108165	chr18	62844921	62845750	+	0	NA	intron (NM_194449, intron 3 of 16)	intron (NM_194449, intron 3 of 16)	129794	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
162853	chr3	49337651	49338280	+	0	NA	intron (NM_199443, intron 1 of 20)	AluSc|SINE|Alu	2088	NM_003363	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
99290	chr17	49786521	49786900	+	0	NA	Intergenic	AluSp|SINE|Alu	-1971	NM_001199158	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
47243	chr12	1117901	1118300	+	0	NA	intron (NM_178039, intron 6 of 17)	L1MA1|LINE|L1	90352	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
111230	chr19	3510851	3511230	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	4729	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
93818	chr17	20701551	20701850	+	0	NA	Intergenic	Intergenic	-10746	NR_073509	100287072		NR_073509		LOC100287072	-	ribosomal protein S6 kinase B1 pseudogene	pseudo
46446	chr11	128086151	128086250	+	0	NA	Intergenic	L1PA14|LINE|L1	-122566	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
63699	chr14	21099551	21099650	+	0	NA	promoter-TSS (NM_016423)	promoter-TSS (NM_016423)	663	NM_001146683	643382		NM_001146683	ENSG00000232070	TMEM253	C14orf176|C14orf95|NCRNA00220	transmembrane protein 253	protein-coding
94668	chr17	30362301	30362800	+	0	NA	Intergenic	Intergenic	-16377	NM_001304	1362		NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
157708	chr22	46399271	46399450	+	0	NA	intron (NM_001378328, intron 10 of 34)	intron (NM_001378328, intron 10 of 34)	63646	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
71958	chr15	23574771	23574930	+	0	NA	Intergenic	MSTB1-int|LTR|ERVL-MaLR	9176	NM_005664	7681		NM_005664	ENSG00000179455	MKRN3	CPPB2|D15S9|RNF63|ZFP127|ZNF127	makorin ring finger protein 3	protein-coding
28386	chr10	47383451	47383550	+	0	NA	intron (NM_001346935, intron 1 of 2)	intron (NM_001346935, intron 1 of 2)	793	NM_153034	118738		NM_153034	ENSG00000265763	ZNF488	-	zinc finger protein 488	protein-coding
30740	chr10	84177201	84178300	+	0	NA	intron (NM_207373, intron 2 of 2)	intron (NM_207373, intron 2 of 2)	3949	NM_207373	387695		NM_207373	ENSG00000188373	GPR15LG	AP-57|AP57|C10orf99|CSBF|GPR15L|UNQ1833	G protein-coupled receptor 15 ligand	protein-coding
176876	chr4	102630571	102631140	+	0	NA	TTS (NM_005908)	TTS (NM_005908)	-128369	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
178550	chr4	151103551	151104350	+	0	NA	TTS (NR_000007)	TTS (NR_000007)	123	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
236434	chrX	71514101	71514800	+	0	NA	intron (NR_104396, intron 1 of 2)	intron (NR_104396, intron 1 of 2)	-18654	NM_181673	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
70983	chr14	104709901	104710530	+	0	NA	intron (NM_022489, intron 13 of 22)	intron (NM_022489, intron 13 of 22)	-14014	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
46628	chr11	128628501	128629550	+	0	NA	Intergenic	Intergenic	-41467	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
181042	chr5	35924071	35924250	+	0	NA	intron (NM_144647, intron 1 of 4)	MIR|SINE|MIR	14462	NM_001042625	133690		NM_144647	ENSG00000152611	CAPSL	-	calcyphosine like	protein-coding
57644	chr12	122519421	122520030	+	0	NA	intron (NR_036436, intron 3 of 9)	intron (NR_036436, intron 3 of 9)	7211	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
49069	chr12	14415651	14416000	+	0	NA	intron (NM_181352, intron 1 of 14)	MER2|DNA|TcMar-Tigger	30544	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
218798	chr8	59025671	59026230	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	93197	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
142927	chr20	18466771	18467970	+	0	NA	promoter-TSS (NM_018152)	promoter-TSS (NM_018152)	-20	NR_104209	10621		NM_006466	ENSG00000132664	POLR3F	C34|IMD101|RPC39|RPC6	RNA polymerase III subunit F	protein-coding
87996	chr16	80727221	80727730	+	0	NA	intron (NM_152342, intron 1 of 6)	L1HS|LINE|L1	77123	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
128429	chr2	55415301	55416700	+	0	NA	intron (NM_018084, intron 2 of 31)	L1MEc|LINE|L1	3856	NM_018084	55704		NM_018084	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL	coiled-coil domain containing 88A	protein-coding
160474	chr3	30563451	30563550	+	0	NA	Intergenic	AluY|SINE|Alu	-43002	NM_001024847	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
233256	chr9	137276501	137276700	+	0	NA	Intergenic	Intergenic	-1126	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
77402	chr15	83108451	83108950	+	0	NA	intron (NM_001353883, intron 1 of 7)	intron (NM_001353883, intron 1 of 7)	1055	NM_001353884	53346		NM_023003	ENSG00000136404	TM6SF1	-	transmembrane 6 superfamily member 1	protein-coding
220302	chr8	98165571	98165930	+	0	NA	Intergenic	AluJb|SINE|Alu	47910	NM_015029	10940		NM_015029	ENSG00000104356	POP1	ANXD2	POP1 homolog, ribonuclease P/MRP subunit	protein-coding
152508	chr22	20949651	20949950	+	0	NA	exon (NM_005207, exon 3 of 3)	exon (NM_005207, exon 3 of 3)	-7292	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
85713	chr16	56617051	56617900	+	0	NA	promoter-TSS (NR_001447)	promoter-TSS (NR_001447)	14	NR_001447	4500		NR_001447	ENSG00000291105	MT1L	MT1|MT1R|MTF	metallothionein 1L (pseudogene)	pseudo
226245	chr9	66805271	66805430	+	0	NA	Intergenic	AluSq|SINE|Alu	-95375	NM_033160	26149		NM_033160	ENSG00000274349	ZNF658	-	zinc finger protein 658	protein-coding
43282	chr11	75820621	75820880	+	0	NA	intron (NM_003369, intron 1 of 14)	L1MC3|LINE|L1	5540	NM_003369	7405		NM_003369	ENSG00000198382	UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
102366	chr17	75521571	75521730	+	0	NA	intron (NM_207346, intron 7 of 10)	intron (NM_207346, intron 7 of 10)	-4047	NM_001031803	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
131335	chr2	96144601	96145900	+	0	NA	exon (NM_004418, exon 1 of 4)	exon (NM_004418, exon 1 of 4)	190	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
159367	chr3	13333051	13333350	+	0	NA	intron (NM_024923, intron 28 of 39)	intron (NM_024923, intron 28 of 39)	-49943	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
93450	chr17	18679471	18679630	+	0	NA	intron (NM_001368134, intron 3 of 3)	AluSx|SINE|Alu	2764	NM_001368135	2310		NM_001368134	ENSG00000240445	FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B	protein-coding
181199	chr5	39152871	39153450	+	0	NA	intron (NM_199335, intron 3 of 17)	intron (NM_199335, intron 3 of 17)	66403	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
25142	chr10	4234521	4235400	+	0	NA	intron (NR_108040, intron 2 of 2)	Tigger2|DNA|TcMar-Tigger	8952	NR_108040	100652988		NR_108040		LINC00702	-	long intergenic non-protein coding RNA 702	ncRNA
145789	chr20	45380121	45380780	+	0	NA	intron (NR_003189, intron 3 of 5)	intron (NR_003189, intron 3 of 5)	-2125	NM_014477	27296		NM_014477	ENSG00000124251	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
234736	chrX	21959651	21959950	+	0	NA	intron (NM_004595, intron 1 of 10)	intron (NM_004595, intron 1 of 10)	19091	NM_004595	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
145617	chr20	44654251	44654350	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-2542	NM_001322051	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
38281	chr11	43308951	43309760	+	0	NA	Intergenic	LTR78|LTR|ERV1	-2641	NM_001142930	8539		NM_006595	ENSG00000166181	API5	AAC-11|AAC11	apoptosis inhibitor 5	protein-coding
1604	chr1	3654171	3654330	+	0	NA	intron (NM_001204185, intron 1 of 12)	intron (NM_001204185, intron 1 of 12)	1685	NM_001204187	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
110639	chr19	2229271	2229730	+	0	NA	TTS (NM_001300836)	TTS (NM_001300836)	4649	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
223833	chr8	145001101	145001500	+	0	NA	intron (NR_023392, intron 1 of 4)	L2a|LINE|L2	-1511	NR_026974	286103		NM_178535	ENSG00000255559	ZNF252P-AS1	C8orf77	ZNF252P antisense RNA 1	ncRNA
74083	chr15	52681521	52681930	+	0	NA	intron (NM_001385021, intron 1 of 10)	intron (NM_001385021, intron 1 of 10)	-2337	NR_169540	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
98382	chr17	46500121	46500580	+	0	NA	Intergenic	Intergenic	-12360	NM_001006607	474170		NM_001006607	ENSG00000238083	LRRC37A2	LRRC37	leucine rich repeat containing 37 member A2	protein-coding
150926	chr21	44243401	44245080	+	0	NA	Intergenic	Intergenic	-3274	NM_001363770	102723996		NM_001363770	ENSG00000277117	LOC102723996	-	ICOS ligand	protein-coding
64287	chr14	23479771	23479930	+	0	NA	Intergenic	AluJr|SINE|Alu	10147	NM_001042635	25983		NM_015514	ENSG00000129460	NGDN	C14orf120|CANu1|LCP5|NGD|lpd-2	neuroguidin	protein-coding
195047	chr6	35491401	35492250	+	0	NA	intron (NM_003214, intron 1 of 12)	intron (NM_003214, intron 1 of 12)	5254	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
68752	chr14	91052571	91053130	+	0	NA	intron (NM_001322235, intron 1 of 17)	AluYm1|SINE|Alu	7274	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
76655	chr15	75648921	75649180	+	0	NA	promoter-TSS (NM_001318146)	promoter-TSS (NM_001318146)	43	NM_001318146	257364		NM_153271	ENSG00000173548	SNX33	SH3PX3|SH3PXD3C|SNX30	sorting nexin 33	protein-coding
42611	chr11	72111951	72113450	+	0	NA	promoter-TSS (NM_001330321)	promoter-TSS (NM_001330321)	-5	NM_001278487	25906		NM_014042	ENSG00000110200	ANAPC15	APC15|C11orf51|HSPC020	anaphase promoting complex subunit 15	protein-coding
211800	chr7	107874521	107875100	+	0	NA	Intergenic	Intergenic	-16297	NM_001289751	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
180407	chr5	10352651	10354600	+	0	NA	promoter-TSS (NM_005885)	promoter-TSS (NM_005885)	-70	NM_005885	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
90694	chr17	1740121	1741230	+	0	NA	Intergenic	Intergenic	-2196	NM_000934	5345		NM_000934	ENSG00000167711	SERPINF2	A2AP|AAP|ALPHA-2-PI|API|PLI|alpha2AP	serpin family F member 2	protein-coding
169271	chr3	157618051	157618500	+	0	NA	Intergenic	Intergenic	74963	NR_166164	152078		NM_001099777	ENSG00000293490	SLC66A1LP	C3orf55|PQLC2L|SLC66A1L|SLC66A2L	solute carrier family 66 member 1 like, pseudogene	pseudo
71241	chr14	105185101	105185300	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-3877	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
75249	chr15	64901001	64901300	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-10752	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
74276	chr15	57559721	57560180	+	0	NA	Intergenic	Intergenic	-31954	NM_001018091	145781		NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GCOM1, MYZAP-POLR2M combined locus	protein-coding
156313	chr22	40634171	40634530	+	0	NA	intron (NM_001282661, intron 1 of 13)	AluJr|SINE|Alu	2369	NM_020831	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
69700	chr14	98182351	98183080	+	0	NA	Intergenic	Intergenic	-204591	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
116393	chr19	17955801	17956000	+	0	NA	intron (NM_002248, intron 2 of 10)	intron (NM_002248, intron 2 of 10)	4598	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
4968	chr1	24153251	24153550	+	0	NA	TTS (NM_173064)	TTS (NM_173064)	-10260	NM_021258	58985		NM_021258	ENSG00000142677	IL22RA1	CRF2-9|IL22R|IL22R1	interleukin 22 receptor subunit alpha 1	protein-coding
107530	chr18	48445421	48445880	+	0	NA	Intergenic	Intergenic	-33065	NM_001371287	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
88335	chr16	84518171	84519750	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-14301	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
217031	chr8	23243201	23244200	+	0	NA	promoter-TSS (NM_152272)	promoter-TSS (NM_152272)	63	NM_152272	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
227351	chr9	89472851	89473150	+	0	NA	intron (NM_001371194, intron 1 of 15)	AluJo|SINE|Alu	6890	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
98518	chr17	47536721	47536980	+	0	NA	intron (NM_006310, intron 1 of 22)	AluSq2|SINE|Alu	5742	NM_006310	9520		NM_006310	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
217304	chr8	27387501	27387780	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	-45730	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
94179	chr17	28540401	28540990	+	0	NA	Intergenic	Intergenic	11929	NM_001330166	9094		NM_005148	ENSG00000109103	UNC119	CORD24|HRG4|IMD13|POC7|POC7A	unc-119 lipid binding chaperone	protein-coding
214265	chr7	148966581	148967450	+	0	NA	Intergenic	Intergenic	3700	NR_004393	6086		NR_004393	ENSG00000252316	RNY4	HY4|Y4	RNA, Ro60-associated Y4	ncRNA
95146	chr17	35073051	35073650	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	-9643	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
189310	chr5	172141271	172142100	+	0	NA	intron (NM_005990, intron 2 of 18)	intron (NM_005990, intron 2 of 18)	46539	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
117752	chr19	29668971	29670100	+	0	NA	intron (NM_024310, intron 1 of 1)	intron (NM_024310, intron 1 of 1)	4074	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
195229	chr6	36197001	36198200	+	0	NA	intron (NM_015695, intron 1 of 12)	intron (NM_015695, intron 1 of 12)	856	NM_015695	27154		NM_015695	ENSG00000096070	BRPF3	-	bromodomain and PHD finger containing 3	protein-coding
7090	chr1	32066321	32067030	+	0	NA	Intergenic	Intergenic	-5356	NM_001319677	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
140888	chr2	237655401	237655600	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	27913	NM_001137550	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
2532	chr1	9720871	9721030	+	0	NA	intron (NM_001350234, intron 13 of 23)	intron (NM_001350234, intron 13 of 23)	29483	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
120653	chr19	45081321	45081580	+	0	NA	intron (NM_001007270, intron 2 of 2)	AluSx3|SINE|Alu	2190	NM_001007269	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
213859	chr7	142303551	142303900	+	0	NA	Intergenic	Intergenic	-31476	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
147094	chr20	53856371	53856530	+	0	NA	Intergenic	LTR8|LTR|ERV1	19259	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
14098	chr1	120913401	120915750	+	0	NA	promoter-TSS (NR_160510)	promoter-TSS (NR_160510)	-461	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
112635	chr19	6790071	6790830	+	0	NA	intron (NM_005428, intron 1 of 26)	MLT1C|LTR|ERVL-MaLR	17742	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
137583	chr2	197271051	197271350	+	0	NA	intron (NR_046837, intron 5 of 5)	MLT1A0|LTR|ERVL-MaLR	31319	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
121556	chr19	47256021	47257900	+	0	NA	intron (NM_015603, intron 1 of 11)	CpG	435	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
116142	chr19	17377201	17377700	+	0	NA	promoter-TSS (NM_031310)	promoter-TSS (NM_031310)	-108	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
164963	chr3	71272451	71272550	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-17258	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
104184	chr17	80426051	80426150	+	0	NA	intron (NR_148043, intron 5 of 5)	intron (NR_148043, intron 5 of 5)	6682	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
227678	chr9	92991571	92992100	+	0	NA	intron (NM_001369951, intron 3 of 17)	L1MA5A|LINE|L1	17366	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
172933	chr4	3514271	3514630	+	0	NA	intron (NR_110005, intron 7 of 7)	intron (NR_110005, intron 7 of 7)	17699	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
238235	chrX	140918271	140918830	+	0	NA	Intergenic	Intergenic	7681	NR_031725	100302169		NR_031725		MIR320D2	MIR320D-2|MIRN320D2|hsa-mir-320d-2|mir-320d-2	microRNA 320d-2	ncRNA
50600	chr12	48666021	48666280	+	0	NA	intron (NM_017822, intron 7 of 9)	AluJb|SINE|Alu	1443	NR_002951	677794		NR_002951	ENSG00000207313	SNORA2B	ACA2b	small nucleolar RNA, H/ACA box 2B	snoRNA
167151	chr3	128055171	128055350	+	0	NA	intron (NM_013336, intron 2 of 11)	intron (NM_013336, intron 2 of 11)	2823	NM_013336	29927		NM_013336	ENSG00000058262	SEC61A1	ADTKD5|CVID15|HNFJ4|HSEC61|SEC61|SEC61A	SEC61 translocon subunit alpha 1	protein-coding
120903	chr19	45597221	45597850	+	0	NA	intron (NM_005282, intron 1 of 1)	L2a|LINE|L2	4677	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
22608	chr1	223331351	223331650	+	0	NA	intron (NM_001037175, intron 2 of 5)	intron (NM_001037175, intron 2 of 5)	32676	NM_001037175	55061		NM_017982	ENSG00000143502	SUSD4	PRO222	sushi domain containing 4	protein-coding
207514	chr7	44800671	44801350	+	0	NA	intron (NM_021130, intron 4 of 4)	AluY|SINE|Alu	4329	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
156019	chr22	39949271	39949430	+	0	NA	intron (NM_001291826, intron 2 of 6)	MIRb|SINE|MIR	2533	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
33506	chr10	119142651	119142950	+	0	NA	intron (NR_110305, intron 12 of 13)	AluY|SINE|Alu	22892	NR_110305	119559		NM_178867	ENSG00000183605	SFXN4	BCRM1|COXPD18|SLC56A4	sideroflexin 4	protein-coding
234113	chrX	9525971	9526130	+	0	NA	intron (NM_001139467, intron 2 of 16)	intron (NM_001139467, intron 2 of 16)	60992	NM_005647	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
37704	chr11	30196671	30196850	+	0	NA	Intergenic	Intergenic	-34254	NM_001382289	2488		NM_000510	ENSG00000131808	FSHB	HH24	follicle stimulating hormone subunit beta	protein-coding
116099	chr19	17288351	17288850	+	0	NA	TTS (NR_103530)	TTS (NR_103530)	6699	NM_001278444	126549		NM_152363	ENSG00000160117	ANKLE1	ANKRD41|LEM3|LEMD6	ankyrin repeat and LEM domain containing 1	protein-coding
185805	chr5	132431671	132432350	+	0	NA	intron (NR_161242, intron 2 of 3)	MLT1J|LTR|ERVL-MaLR	21081	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
183146	chr5	75047801	75048000	+	0	NA	5' UTR (NM_001366737, exon 3 of 4)	5' UTR (NM_001366737, exon 3 of 4)	4658	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
228444	chr9	99833621	99834100	+	0	NA	3' UTR (NM_173199, exon 5 of 5)	3' UTR (NM_173199, exon 5 of 5)	11975	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
166741	chr3	121840601	121841000	+	0	NA	intron (NM_001320041, intron 1 of 4)	AluY|SINE|Alu	5591	NM_018456	55840		NM_018456	ENSG00000145088	EAF2	BM040|TRAITS|U19	ELL associated factor 2	protein-coding
153077	chr22	23315371	23316300	+	0	NA	3' UTR (NM_004327, exon 23 of 23)	3' UTR (NM_004327, exon 23 of 23)	-10781	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
65772	chr14	54440721	54441850	+	0	NA	promoter-TSS (NM_005776)	promoter-TSS (NM_005776)	89	NM_005776	10175		NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family member 1	protein-coding
124162	chr19	56109301	56109500	+	0	NA	intron (NM_001351682, intron 1 of 1)	MER34|LTR|ERV1	11895	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
10998	chr1	84573821	84574980	+	0	NA	promoter-TSS (NM_004388)	promoter-TSS (NM_004388)	40	NM_004388	1486		NM_004388	ENSG00000117151	CTBS	CTB	chitobiase	protein-coding
182708	chr5	68236371	68236730	+	0	NA	intron (NM_181523, intron 2 of 15)	MIRb|SINE|MIR	20794	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
8554	chr1	41282401	41282980	+	0	NA	Intergenic	MIRc|SINE|MIR	-40384	NM_012236	22955		NM_012236	ENSG00000010803	SCMH1	Scml3	Scm polycomb group protein homolog 1	protein-coding
109888	chr19	1260101	1263600	+	0	NA	Intergenic	Intergenic	-7418	NM_001280	1153		NM_001280	ENSG00000099622	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
7400	chr1	32935101	32935300	+	0	NA	Intergenic	AluSx|SINE|Alu	29609	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
185661	chr5	131594221	131594600	+	0	NA	intron (NM_016340, intron 3 of 27)	MSTA-int|LTR|ERVL-MaLR	40819	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
136410	chr2	176158801	176159000	+	0	NA	intron (NM_006898, intron 1 of 3)	intron (NM_006898, intron 1 of 3)	1593	NM_006898	3232		NM_006898	ENSG00000128652	HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding
120754	chr19	45408201	45409100	+	0	NA	exon (NM_012099, exon 3 of 3)	exon (NM_012099, exon 3 of 3)	2006	NM_012099	10849		NM_012099	ENSG00000117877	POLR1G	ASE-1|ASE1|CAST|CD3EAP|PAF49|RPA34	RNA polymerase I subunit G	protein-coding
110701	chr19	2295921	2296540	+	0	NA	intron (NM_001101391, intron 1 of 1)	intron (NM_001101391, intron 1 of 1)	11924	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
237815	chrX	129958651	129958750	+	0	NA	Intergenic	L2c|LINE|L2	-22279	NM_001184772	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
203470	chr7	497801	498300	+	0	NA	3' UTR (NM_002607, exon 7 of 7)	3' UTR (NM_002607, exon 7 of 7)	21794	NM_002607	5154		NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
218766	chr8	58967551	58967650	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	151547	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
102398	chr17	75590371	75591580	+	0	NA	exon (NM_001309242, exon 3 of 63)	exon (NM_001309242, exon 3 of 63)	2917	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
216992	chr8	23105971	23106200	+	0	NA	intron (NM_003841, intron 1 of 4)	intron (NM_003841, intron 1 of 4)	3164	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
181924	chr5	54866221	54866480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	119243	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
49603	chr12	27460521	27460780	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-6160	NM_001145010	341346		NM_001145010	ENSG00000165935	SMCO2	C12orf70	single-pass membrane protein with coiled-coil domains 2	protein-coding
229775	chr9	125227521	125227980	+	0	NA	intron (NM_001174153, intron 5 of 7)	L3|LINE|CR1	13593	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
160102	chr3	19103571	19103750	+	0	NA	Intergenic	L1PA7|LINE|L1	-44850	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
66180	chr14	60655251	60655550	+	0	NA	Intergenic	Intergenic	-5923	NM_005982	6495		NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
117556	chr19	21048671	21048980	+	0	NA	intron (NM_025189, intron 4 of 4)	SVA_C|Retroposon|SVA	28168	NM_025189	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
56660	chr12	119876721	119877980	+	0	NA	promoter-TSS (NM_001206999)	promoter-TSS (NM_001206999)	-30	NM_007174	11113		NM_007174	ENSG00000122966	CIT	CITK|CRIK|MCPH17|STK21	citron rho-interacting serine/threonine kinase	protein-coding
218475	chr8	51850571	51851150	+	0	NA	intron (NM_001286783, intron 1 of 5)	intron (NM_001286783, intron 1 of 5)	-41415	NM_144651	137902		NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin like	protein-coding
211678	chr7	106367021	106367280	+	0	NA	Intergenic	Intergenic	-82167	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
89109	chr16	88493671	88493830	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	24832	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
45886	chr11	120168971	120169680	+	0	NA	intron (NR_159965, intron 1 of 1)	CpG	348	NR_159965	107984399		NR_159965	ENSG00000176984	LOC107984399	-	uncharacterized LOC107984399	ncRNA
75587	chr15	67088871	67089030	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	23348	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
42319	chr11	68475321	68475800	+	0	NA	intron (NM_001352362, intron 2 of 24)	SVA_C|Retroposon|SVA	14808	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
224617	chr9	20512301	20512500	+	0	NA	intron (NM_001286691, intron 2 of 10)	MER5A|DNA|hAT-Charlie	-10058	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
32387	chr10	102418051	102418780	+	0	NA	intron (NM_001270965, intron 2 of 17)	(CACATA)n|Simple_repeat|Simple_repeat	370	NM_002779	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
197269	chr6	70667371	70669180	+	0	NA	promoter-TSS (NM_001281440)	promoter-TSS (NM_001281440)	-255	NM_001281440	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
121752	chr19	47750421	47751330	+	0	NA	intron (NM_015710, intron 3 of 12)	intron (NM_015710, intron 3 of 12)	-4978	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
219643	chr8	80249601	80249880	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	8351	NR_049894	100847056		NR_049894	ENSG00000265588	MIR5708	-	microRNA 5708	ncRNA
194216	chr6	32191621	32192100	+	0	NA	exon (NM_001276501, exon 3 of 4).4	exon (NM_001276501, exon 3 of 4).4	783	NM_001276501	63940		NM_022107	ENSG00000213654	GPSM3	AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1	G protein signaling modulator 3	protein-coding
180922	chr5	34486201	34486630	+	0	NA	Intergenic	Intergenic	-169913	NM_001145522	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
64549	chr14	24605321	24606200	+	0	NA	TTS (NM_001270781)	TTS (NM_001270781)	3925	NM_001270781	2999		NM_033423	ENSG00000100450	GZMH	CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2	granzyme H	protein-coding
229466	chr9	121783701	121784100	+	0	NA	3' UTR (NM_032552, exon 17 of 17)	3' UTR (NM_032552, exon 17 of 17)	41115	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
141225	chr2	239412401	239413280	+	0	NA	Intergenic	MER34|LTR|ERV1	11092	NR_135577	101928111		NR_135575	ENSG00000222020	HDAC4-AS1	-	HDAC4 antisense RNA 1	ncRNA
65576	chr14	51992871	51993500	+	0	NA	intron (NM_016039, intron 2 of 7)	intron (NM_016039, intron 2 of 7)	3639	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
195172	chr6	35918101	35918300	+	0	NA	intron (NR_034069, intron 2 of 15)	A-rich|Low_complexity|Low_complexity	2898	NM_003137	6732		NM_003137	ENSG00000096063	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
56695	chr12	120074671	120075330	+	0	NA	intron (NR_147892, intron 8 of 11)	intron (NR_147892, intron 8 of 11)	41753	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
7696	chr1	35940851	35941350	+	0	NA	intron (NM_177422, intron 1 of 16)	L2|LINE|L2	9995	NM_177422	192669		NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
113313	chr19	8578571	8579380	+	0	NA	Intergenic	Intergenic	-1533	NM_012335	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
130157	chr2	75404001	75404230	+	0	NA	Intergenic	Intergenic	-119953	NR_110281	101927884		NR_110281	ENSG00000231172	EVA1A-AS	EVA1A-AS1	EVA1A antisense RNA	ncRNA
153393	chr22	24628821	24629630	+	0	NA	TTS (NM_001288833)	TTS (NM_001288833)	-3690	NR_024494	644165		NR_024494		BCRP3	BCR3|BCRL3|BCRL6	BCR pseudogene 3	pseudo
200159	chr6	130515801	130516050	+	0	NA	Intergenic	AluSz|SINE|Alu	78808	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
33702	chr10	120949031	120949930	+	0	NA	Intergenic	Intergenic	98118	NM_018117	55717		NM_018117	ENSG00000120008	WDR11	BRWD2|DR11|HH14|SRI1|WDR15	WD repeat domain 11	protein-coding
228007	chr9	95570721	95570980	+	0	NA	Intergenic	Intergenic	-53879	NM_001083602	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
176439	chr4	89283511	89284590	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	23750	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
82626	chr16	18946001	18946780	+	0	NA	Intergenic	Intergenic	-19982	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
161104	chr3	38172801	38173000	+	0	NA	intron (NM_005109, intron 1 of 17)	MLT1J|LTR|ERVL-MaLR	7363	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
206321	chr7	30289851	30289950	+	0	NA	promoter-TSS (NR_037513)	promoter-TSS (NR_037513)	-10	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
219744	chr8	81073821	81074080	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	38118	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
232651	chr9	136479421	136480030	+	0	NA	intron (NM_014866, intron 1 of 31)	intron (NM_014866, intron 1 of 31)	-3285	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
48701	chr12	10611271	10611430	+	0	NA	intron (NM_001319985, intron 1 of 4)	intron (NM_001319985, intron 1 of 4)	1628	NM_001300739	55110		NM_018048	ENSG00000111196	MAGOHB	MGN2|mago|magoh	mago homolog B, exon junction complex subunit	protein-coding
154625	chr22	36313701	36315200	+	0	NA	intron (NM_002473, intron 12 of 40)	intron (NM_002473, intron 12 of 40)	-27543	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
118251	chr19	35247651	35249450	+	0	NA	promoter-TSS (NM_001260489)	promoter-TSS (NM_001260489)	-452	NM_015925	51599		NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding
60488	chr13	41266871	41267430	+	0	NA	intron (NM_001354073, intron 1 of 14)	L1MC5|LINE|L1	-3574	NM_004294	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
128204	chr2	53968051	53968630	+	0	NA	intron (NM_014614, intron 1 of 46)	MIR3|SINE|MIR	2653	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
187621	chr5	142979571	142979730	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-110740	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
218562	chr8	54454601	54455030	+	0	NA	Intergenic	CpG	-3120	NM_022454	64321		NM_022454	ENSG00000164736	SOX17	VUR3	SRY-box transcription factor 17	protein-coding
163985	chr3	53110351	53110450	+	0	NA	intron (NM_052859, intron 7 of 12)	L2c|LINE|L2	20035	NM_052859	91869		NM_052859	ENSG00000163933	RFT1	CDG1N	RFT1 homolog	protein-coding
122060	chr19	48675051	48675800	+	0	NA	intron (NR_004401, intron 4 of 4)	intron (NR_004401, intron 4 of 4)	-2408	NM_145807	126147		NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
232901	chr9	136854271	136855100	+	0	NA	intron (NM_206920, intron 8 of 26)	intron (NM_206920, intron 8 of 26)	2339	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
93617	chr17	19155521	19155880	+	0	NA	non-coding (NR_160285, exon 4 of 4).2	non-coding (NR_160285, exon 4 of 4).2	6924	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
94867	chr17	31516221	31516480	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	-18533	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
51064	chr12	49840601	49840950	+	0	NA	non-coding (NR_027499, exon 3 of 3)	non-coding (NR_027499, exon 3 of 3)	2331	NM_181708	144233		NM_181708	ENSG00000186666	BCDIN3D	-	BCDIN3 domain containing RNA methyltransferase	protein-coding
142402	chr20	3850771	3850930	+	0	NA	intron (NM_001385663, intron 1 of 7)	AluY|SINE|Alu	4016	NM_020746	57506		NM_020746	ENSG00000088888	MAVS	CARDIF|IPS-1|IPS1|VISA	mitochondrial antiviral signaling protein	protein-coding
15471	chr1	150357871	150358230	+	0	NA	Intergenic	AluSp|SINE|Alu	-6061	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
11479	chr1	90714501	90714700	+	0	NA	exon (NM_020063, exon 2 of 3)	exon (NM_020063, exon 2 of 3)	2702	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
224789	chr9	22103301	22103500	+	0	NA	intron (NR_047532, intron 9 of 13)	intron (NR_047532, intron 9 of 13)	-94087	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
81424	chr16	8816751	8817400	+	0	NA	intron (NM_000303, intron 7 of 7)	FLAM_A|SINE|Alu	19236	NM_000303	5373		NM_000303	ENSG00000140650	PMM2	CDG1|CDG1a|CDGS|PMI|PMI1|PMM 2	phosphomannomutase 2	protein-coding
179195	chr4	173332021	173332680	+	0	NA	intron (NM_001130689, intron 3 of 3)	intron (NM_001130689, intron 3 of 3)	1419	NM_001130689	3148		NM_002129	ENSG00000164104	HMGB2	HMG2	high mobility group box 2	protein-coding
181177	chr5	39077021	39077500	+	0	NA	Intergenic	Intergenic	-2861	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
17857	chr1	159928801	159929130	+	0	NA	exon (NM_020789, exon 19 of 21)	exon (NM_020789, exon 19 of 21)	-3458	NM_003564	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
33348	chr10	117136471	117136630	+	0	NA	exon (NM_199131, exon 2 of 4)	exon (NM_199131, exon 2 of 4)	1720	NM_199131	11023		NM_199131	ENSG00000148704	VAX1	MCOPS11	ventral anterior homeobox 1	protein-coding
151046	chr21	44654021	44655280	+	0	NA	promoter-TSS (NM_198698)	promoter-TSS (NM_198698)	9	NM_198698	386684		NM_198698	ENSG00000212933	KRTAP12-4	KRTAP12.4	keratin associated protein 12-4	protein-coding
18451	chr1	161538251	161538550	+	0	NA	Intergenic	AluYe5|SINE|Alu	11418	NM_000569	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
4882	chr1	23784101	23784700	+	0	NA	intron (NM_020362, intron 3 of 5)	AluY|SINE|Alu	5982	NM_020362	57095		NM_020362	ENSG00000057757	PITHD1	C1orf128|HT014|TXNL1CL	PITH domain containing 1	protein-coding
142174	chr20	2864171	2864530	+	0	NA	intron (NM_022575, intron 17 of 23)	intron (NM_022575, intron 17 of 23)	155	NM_002836	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
193153	chr6	29641671	29642430	+	0	NA	Intergenic	L2b|LINE|L2	-8867	NM_001470	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
53642	chr12	68234201	68234750	+	0	NA	Intergenic	Intergenic	-8665	NM_018402	55801		NM_018402	ENSG00000111536	IL26	AK155|IL-26	interleukin 26	protein-coding
161565	chr3	42772471	42773550	+	0	NA	intron (NR_122070, intron 1 of 1)	MIRc|SINE|MIR	243	NM_144719	152206		NM_144719	ENSG00000244607	CCDC13	-	coiled-coil domain containing 13	protein-coding
191785	chr6	14133251	14133550	+	0	NA	intron (NM_001040280, intron 3 of 4)	MIRc|SINE|MIR	15628	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
133490	chr2	119936021	119936280	+	0	NA	intron (NM_002830, intron 15 of 26)	AluYk3|SINE|Alu	-76927	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
86789	chr16	67808671	67809030	+	0	NA	intron (NM_018430, intron 1 of 15)	intron (NM_018430, intron 1 of 15)	1961	NM_001351158	55815		NM_018430	ENSG00000102904	TSNAXIP1	TXI1	translin associated factor X interacting protein 1	protein-coding
216274	chr8	12497421	12498280	+	0	NA	intron (NR_040091, intron 5 of 6)	MER5A1|DNA|hAT-Charlie	60837	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
97230	chr17	42823751	42824900	+	0	NA	promoter-TSS (NM_003766)	promoter-TSS (NM_003766)	-9	NM_001314000	8678		NM_003766	ENSG00000126581	BECN1	ATG6|VPS30|beclin1	beclin 1	protein-coding
19862	chr1	183416771	183417950	+	0	NA	intron (NM_015039, intron 1 of 10)	CpG	1020	NM_015039	23057		NM_015039	ENSG00000157064	NMNAT2	C1orf15|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
28718	chr10	61883501	61883700	+	0	NA	Intergenic	Intergenic	-18099	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
137055	chr2	190889401	190890800	+	0	NA	intron (NM_014905, intron 1 of 17)	MIRb|SINE|MIR	9279	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
213912	chr7	142516051	142516430	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	41713	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
232378	chr9	135939271	135941200	+	0	NA	intron (NM_016172, intron 7 of 9)	Tigger18a|DNA|TcMar-Tigger	21138	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
174187	chr4	36334251	36334350	+	0	NA	intron (NR_165630, intron 9 of 10)	MER5A|DNA|hAT-Charlie	52684	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
43966	chr11	93743221	93743750	+	0	NA	5' UTR (NM_001351985, exon 2 of 10)	5' UTR (NM_001351985, exon 2 of 10)	1813	NM_001286067	28970		NM_014039	ENSG00000182919	C11orf54	MEEP|PTD012|PTOD012	chromosome 11 open reading frame 54	protein-coding
34125	chr10	127991171	127991780	+	0	NA	intron (NM_001316677, intron 1 of 20)	intron (NM_001316677, intron 1 of 20)	4195	NM_001316677	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
133761	chr2	127636701	127637230	+	0	NA	intron (NM_001080527, intron 46 of 46)	intron (NM_001080527, intron 46 of 46)	-8899	NM_001161415	2840		NM_005291	ENSG00000144230	GPR17	-	G protein-coupled receptor 17	protein-coding
92033	chr17	7482601	7483600	+	0	NA	TTS (NM_001102614)	TTS (NM_001102614)	1149	NM_020899	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
20345	chr1	197885051	197885190	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-17510	NM_001024594	388722		NM_001024594	ENSG00000203724	C1orf53	-	chromosome 1 open reading frame 53	protein-coding
91005	chr17	2778621	2778880	+	0	NA	intron (NM_001330058, intron 1 of 24)	LTR16E2|LTR|ERVL	1992	NM_001330058	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
213283	chr7	134856001	134856200	+	0	NA	intron (NM_033138, intron 2 of 14)	intron (NM_033138, intron 2 of 14)	-35300	NM_033139	800		NM_004342	ENSG00000122786	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22|h-CD	caldesmon 1	protein-coding
47284	chr12	1634551	1634950	+	0	NA	intron (NM_030775, intron 3 of 4)	intron (NM_030775, intron 3 of 4)	5519	NM_032642	81029		NM_030775	ENSG00000111186	WNT5B	-	Wnt family member 5B	protein-coding
73404	chr15	42734501	42734980	+	0	NA	intron (NM_138477, intron 6 of 27)	AluJb|SINE|Alu	2388	NM_138477	146059		NM_138477	ENSG00000140326	CDAN1	CDA1|CDAI|CDAN1A|DLT|PRO1295	codanin 1	protein-coding
198715	chr6	108167551	108167800	+	0	NA	promoter-TSS (NM_001286102)	promoter-TSS (NM_001286102)	-348	NM_001286102	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
234532	chrX	19643271	19643430	+	0	NA	intron (NM_001353892, intron 8 of 17)	AluJb|SINE|Alu	27649	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
126405	chr2	27644921	27645380	+	0	NA	intron (NR_026735, intron 10 of 11)	AluJr4|SINE|Alu	16100	NM_007266	11321		NM_007266	ENSG00000198522	GPN1	ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1	GPN-loop GTPase 1	protein-coding
195404	chr6	36781801	36782130	+	0	NA	intron (NM_001376889, intron 9 of 21)	MIR3|SINE|MIR	-16170	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
35465	chr11	1468071	1469050	+	0	NA	TTS (NM_001172223)	TTS (NM_001172223)	12326	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
5924	chr1	26854001	26854200	+	0	NA	3' UTR (NM_032283, exon 8 of 8)	3' UTR (NM_032283, exon 8 of 8)	-9049	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
227800	chr9	93154321	93154650	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-20234	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
87581	chr16	72931721	72932180	+	0	NA	intron (NM_006885, intron 3 of 9)	intron (NM_006885, intron 3 of 9)	116178	NM_006885	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
68556	chr14	89366551	89366650	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	50633	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
2162	chr1	8425671	8425830	+	0	NA	intron (NR_125999, intron 1 of 3)	intron (NR_125999, intron 1 of 3)	1105	NR_125999	102724552		NR_125999		RERE-AS1	-	RERE antisense RNA 1	ncRNA
235740	chrX	48939601	48940900	+	0	NA	intron (NM_001136157, intron 2 of 8)	intron (NM_001136157, intron 2 of 8)	17357	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
153142	chr22	23765801	23766000	+	0	NA	TTS (NM_001301339)	TTS (NM_001301339)	2072	NR_125756	400916		NM_213720	ENSG00000250479	CHCHD10	C22orf16|FTDALS2|IMMD|MIX17A|N27C7-4|SMAJ	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding
180044	chr5	1071351	1071900	+	0	NA	intron (NM_006598, intron 17 of 23).2	intron (NM_006598, intron 17 of 23).2	-8651	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
161472	chr3	42300071	42300230	+	0	NA	Intergenic	Intergenic	-33965	NM_000729	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
58932	chr13	19763721	19764000	+	0	NA	intron (NM_001354909, intron 2 of 8)	AluSz6|SINE|Alu	19085	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
1421	chr1	2577901	2579330	+	0	NA	intron (NR_121638, intron 1 of 3)	intron (NR_121638, intron 1 of 3)	-7908	NR_036637	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
211351	chr7	104952771	104953480	+	0	NA	Intergenic	AluJb|SINE|Alu	-26480	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
221304	chr8	123026121	123026380	+	0	NA	promoter-TSS (NM_001363963)	promoter-TSS (NM_001363963)	-478	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
119729	chr19	41223821	41224350	+	0	NA	intron (NM_021913, intron 4 of 19)	intron (NM_021913, intron 4 of 19)	-2670	NM_001278599	558		NM_001699	ENSG00000167601	AXL	ARK|AXL3|JTK11|Tyro7|UFO	AXL receptor tyrosine kinase	protein-coding
35490	chr11	1516471	1516980	+	0	NA	Intergenic	Intergenic	-29946	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
202155	chr6	155189001	155189630	+	0	NA	intron (NM_001384547, intron 13 of 25)	intron (NM_001384547, intron 13 of 25)	-27651	NM_001010927	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
80525	chr16	2763171	2763550	+	0	NA	exon (NM_016333, exon 11 of 15)	exon (NM_016333, exon 11 of 15)	10722	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
229498	chr9	122226151	122226450	+	0	NA	intron (NM_199160, intron 4 of 8)	CpG	1241	NM_001242334	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
103503	chr17	78414151	78414250	+	0	NA	intron (NR_110601, intron 6 of 8)	intron (NR_110601, intron 6 of 8)	35551	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
113019	chr19	7924851	7925700	+	0	NA	3' UTR (NM_206833, exon 2 of 2)	3' UTR (NM_206833, exon 2 of 2)	860	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
153099	chr22	23520671	23520830	+	0	NA	Intergenic	Intergenic	-17352	NR_109832	101978785		NR_109832		PCAT14	-	prostate cancer associated transcript 14	ncRNA
63021	chr13	112766271	112766430	+	0	NA	intron (NM_032189, intron 1 of 28)	MER107|DNA|hAT-Charlie	-11619	NR_046661	100874205		NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
116077	chr19	17241251	17241950	+	0	NA	intron (NM_005234, intron 1 of 3)	intron (NM_005234, intron 1 of 3)	3742	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
79384	chr16	656021	656480	+	0	NA	intron (NM_145294, intron 17 of 40)	intron (NM_145294, intron 17 of 40)	6885	NM_145294	197335		NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19|POC16	WD repeat domain 90	protein-coding
221031	chr8	116704801	116705400	+	0	NA	intron (NM_003756, intron 2 of 7)	intron (NM_003756, intron 2 of 7)	50723	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
151079	chr21	44817171	44819080	+	0	NA	promoter-TSS (NM_006936)	promoter-TSS (NM_006936)	4	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
145910	chr20	45970801	45973200	+	0	NA	intron (NM_022095, intron 1 of 27)	CpG-17795	203	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
85504	chr16	50762101	50762500	+	0	NA	intron (NM_015247, intron 7 of 19)	L1MC|LINE|L1	19885	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
74044	chr15	52465921	52466730	+	0	NA	intron (NM_000259, intron 1 of 40)	L1M2|LINE|L1	62555	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
223443	chr8	143971871	143972450	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	1369	NM_201378	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
121880	chr19	48331501	48331700	+	0	NA	TTS (NR_130317)	TTS (NR_130317)	5601	NM_001313905	2014		NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3 (MAM blood group)	protein-coding
4352	chr1	20659751	20659850	+	0	NA	intron (NM_005216, intron 2 of 10)	AluJb|SINE|Alu	1569	NM_005216	1650		NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein-coding
160285	chr3	27134221	27134500	+	0	NA	intron (NM_001304384, intron 12 of 16)	intron (NM_001304384, intron 12 of 16)	82163	NM_001304384	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
196695	chr6	44921751	44922500	+	0	NA	intron (NM_001350324, intron 10 of 11)	intron (NM_001350324, intron 10 of 11)	275645	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
125694	chr2	20344001	20344250	+	0	NA	intron (NM_001352925, intron 1 of 19)	AluJb|SINE|Alu	6719	NM_001352927	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
24639	chr1	246782551	246783050	+	0	NA	Intergenic	Intergenic	-6817	NR_015422	149134		NM_207326		LINC01341	-	long intergenic non-protein coding RNA 1341	ncRNA
29985	chr10	73743051	73743150	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1272	NM_004922	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
128810	chr2	62704951	62706680	+	0	NA	promoter-TSS (NM_001354216)	promoter-TSS (NM_001354216)	102	NM_001142616	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
78967	chr15	101451371	101451530	+	0	NA	intron (NM_138319, intron 1 of 20)	intron (NM_138319, intron 1 of 20)	38257	NM_138322	5046		NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
206545	chr7	35535601	35536230	+	0	NA	Intergenic	Intergenic	159220	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
74552	chr15	60522201	60522400	+	0	NA	intron (NR_120339, intron 4 of 5)	MER63D|DNA|hAT-Blackjack	43122	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
127384	chr2	40823651	40823750	+	0	NA	Intergenic	Intergenic	-311265	NM_001372263	6546		NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
208356	chr7	66578471	66578630	+	0	NA	intron (NR_111976, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	13857	NR_111978	493754		NR_002933	ENSG00000291136	RABGEF1P1	GS1-124K5.11	RABGEF1 pseudogene 1	pseudo
192039	chr6	16477951	16478250	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	239513	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
22807	chr1	224619251	224619350	+	0	NA	intron (NM_152495, intron 1 of 5)	intron (NM_152495, intron 1 of 5)	2983	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
163492	chr3	51082451	51082550	+	0	NA	intron (NM_004947, intron 7 of 52)	L1MA4|LINE|L1	-302791	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
211857	chr7	111005571	111005730	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-85356	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
213666	chr7	139875871	139876030	+	0	NA	intron (NM_001314028, intron 3 of 12)	intron (NM_001314028, intron 3 of 12)	46686	NM_001366538	6916		NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding
180450	chr5	10621901	10622100	+	0	NA	intron (NM_001164440, intron 2 of 3)	MLT1A|LTR|ERVL-MaLR	57930	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
115991	chr19	17089901	17090100	+	0	NA	intron (NM_004145, intron 1 of 39)	L1MB5|LINE|L1	-2235	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
155911	chr22	39558651	39559150	+	0	NA	Intergenic	Intergenic	-11853	NM_021096	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
113160	chr19	8363071	8363230	+	0	NA	Intergenic	Intergenic	-1005	NR_104213	51129		NM_016109	ENSG00000167772	ANGPTL4	ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158	angiopoietin like 4	protein-coding
215141	chr7	155456001	155456480	+	0	NA	Intergenic	Intergenic	-1889	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
62336	chr13	99083051	99083350	+	0	NA	intron (NM_001318849, intron 1 of 54)	AluSx|SINE|Alu	3494	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
63856	chr14	21536351	21537150	+	0	NA	intron (NR_111966, intron 1 of 2)	intron (NR_111966, intron 1 of 2)	371	NM_001291446	6297		NM_005407	ENSG00000165821	SALL2	COLB|HSAL2|Sal-2|ZNF795|p150(Sal2)	spalt like transcription factor 2	protein-coding
116226	chr19	17521801	17522130	+	0	NA	TTS (NM_012088)	TTS (NM_012088)	-1336	NM_001098524	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
70944	chr14	104659951	104660350	+	0	NA	TTS (NR_135293)	TTS (NR_135293)	5408	NR_135293	101929634		NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
234905	chrX	31132721	31132980	+	0	NA	intron (NM_000109, intron 77 of 78)	intron (NM_000109, intron 77 of 78)	-60809	NM_031894	53940		NM_031894	ENSG00000132446	FTHL17	CT38	ferritin heavy chain like 17	protein-coding
236844	chrX	79263421	79264280	+	0	NA	Intergenic	Intergenic	103484	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
125793	chr2	23926701	23928130	+	0	NA	promoter-TSS (NR_125717)	promoter-TSS (NR_125717)	-292	NM_001354107	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
120115	chr19	42186601	42187000	+	0	NA	Intergenic	L2c|LINE|L2	30877	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
57683	chr12	122840871	122841230	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	5593	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
161	chr1	598171	598380	+	0	NA	Intergenic	CpG	30734	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
142620	chr20	5606321	5606780	+	0	NA	intron (NM_019593, intron 1 of 19)	intron (NM_019593, intron 1 of 19)	4456	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
152621	chr22	21426201	21426500	+	0	NA	intron (NM_015094, intron 1 of 2)	AluJb|SINE|Alu	8979	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
197137	chr6	59520071	59520230	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1558704	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
131470	chr2	96409621	96410230	+	0	NA	Intergenic	LTR35A|LTR|ERV1	74159	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
178507	chr4	150825501	150825700	+	0	NA	intron (NM_001367550, intron 30 of 56)	AluSq2|SINE|Alu	189667	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
18110	chr1	160705721	160706280	+	0	NA	intron (NM_001256030, intron 1 of 2)	L3|LINE|CR1	5822	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
127230	chr2	38652201	38652880	+	0	NA	Intergenic	LTR54|LTR|ERV1	-13574	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
234655	chrX	20135001	20135580	+	0	NA	TTS (NR_023358)	TTS (NR_023358)	1123	NR_023358	100158262		NR_023358		SCARNA9L	-	small Cajal body-specific RNA 9 like	ncRNA
183222	chr5	76324471	76324830	+	0	NA	intron (NM_001297716, intron 12 of 12)	AluJo|SINE|Alu	-78635	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
110382	chr19	1921971	1922600	+	0	NA	intron (NM_079834, intron 5 of 6)	AluSz|SINE|Alu	16886	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
41209	chr11	65658501	65659150	+	0	NA	intron (NM_001243984, intron 6 of 10)	intron (NM_001243984, intron 6 of 10)	4091	NM_021975	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
45201	chr11	117809051	117809900	+	0	NA	intron (NM_001367905, intron 1 of 6)	intron (NM_001367905, intron 1 of 6)	8039	NM_001367905	57453		NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
3774	chr1	16691921	16692200	+	0	NA	intron (NR_026567, intron 10 of 10)	intron (NR_026567, intron 10 of 10)	10805	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
89936	chr16	89735601	89736100	+	0	NA	intron (NR_110126, intron 9 of 10)	AluSx1|SINE|Alu	14313	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
107362	chr18	45959151	45959650	+	0	NA	intron (NM_020964, intron 1 of 43)	AluSc8|SINE|Alu	7929	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
195096	chr6	35596701	35596900	+	0	NA	intron (NM_001145775, intron 7 of 11)	intron (NM_001145775, intron 7 of 11)	67989	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
220781	chr8	102567771	102568330	+	0	NA	Intergenic	Intergenic	16461	NM_024410	4956		NM_024410	ENSG00000155087	ODF1	CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF	outer dense fiber of sperm tails 1	protein-coding
16004	chr1	152003001	152003500	+	0	NA	Intergenic	Intergenic	-9391	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
80899	chr16	3726021	3726830	+	0	NA	3' UTR (NM_001079846, exon 30 of 30)	3' UTR (NM_001079846, exon 30 of 30)	-8901	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
51998	chr12	53967421	53967950	+	0	NA	intron (NR_003716, intron 1 of 5)	intron (NR_003716, intron 1 of 5)	1071	NR_003716	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
46827	chr11	130915701	130916780	+	0	NA	non-coding (NR_144939, exon 1 of 12)	non-coding (NR_144939, exon 1 of 12)	239	NM_001347919	399979		NM_014758	ENSG00000120451	SNX19	CHET8	sorting nexin 19	protein-coding
183197	chr5	76040751	76041050	+	0	NA	Intergenic	Intergenic	-42483	NM_001297716	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
76526	chr15	75077701	75077900	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	34514	NM_001301105	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
178886	chr4	155809871	155810050	+	0	NA	Intergenic	Intergenic	50939	NM_001291952	2983		NM_000857	ENSG00000061918	GUCY1B1	GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B3	guanylate cyclase 1 soluble subunit beta 1	protein-coding
122119	chr19	48810521	48811590	+	0	NA	promoter-TSS (NM_001164773)	promoter-TSS (NM_001164773)	-26	NM_001190	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
203335	chr6	170222651	170223280	+	0	NA	Intergenic	Intergenic	39604	NR_002787	154449		NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
25218	chr10	5805021	5805680	+	0	NA	intron (NM_001115156, intron 1 of 9)	MER5A|DNA|hAT-Charlie	8084	NM_001494	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
101256	chr17	66310651	66311050	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	8237	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
37513	chr11	18528621	18529230	+	0	NA	TTS (NM_001040697)	TTS (NM_001040697)	-1983	NM_006292	7251		NM_006292	ENSG00000074319	TSG101	TSG10|VPS23	tumor susceptibility 101	protein-coding
23956	chr1	235139951	235141450	+	0	NA	intron (NR_144490, intron 5 of 9)	LTR12C|LTR|ERV1	-11863	NM_014765	9804		NM_014765	ENSG00000173726	TOMM20	MAS20|MOM19|TOM20	translocase of outer mitochondrial membrane 20	protein-coding
61453	chr13	52010151	52010680	+	0	NA	intron (NM_001330579, intron 1 of 18)	L1ME3G|LINE|L1	1035	NM_000053	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
171531	chr3	196711701	196713230	+	0	NA	promoter-TSS (NM_001379469)	promoter-TSS (NM_001379469)	88	NM_017861	54965		NM_017861	ENSG00000163964	PIGX	PIG-X	phosphatidylinositol glycan anchor biosynthesis class X	protein-coding
195068	chr6	35515071	35515830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2554	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
545	chr1	1240421	1240680	+	0	NA	Intergenic	Intergenic	6172	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
227214	chr9	88532501	88532900	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2401	NM_001161625	158046		NM_145283	ENSG00000130045	NXNL2	C9orf121|RDCVF2|RdCVF2L	nucleoredoxin like 2	protein-coding
63391	chr13	114065131	114066910	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	11935	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171816	chr4	665451	666650	+	0	NA	intron (NM_001350155, intron 15 of 17)	intron (NM_001350155, intron 15 of 17)	8226	NM_007100	521		NM_007100	ENSG00000169020	ATP5ME	ATP5I|ATP5K	ATP synthase membrane subunit e	protein-coding
83487	chr16	27409571	27409800	+	0	NA	intron (NM_181079, intron 2 of 9)	L1MEg|LINE|L1	7511	NM_181078	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
204151	chr7	2384401	2384930	+	0	NA	Intergenic	Intergenic	-18946	NM_001243795	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
54796	chr12	94353801	94354000	+	0	NA	intron (NR_160431, intron 7 of 12)	L1MA5|LINE|L1	91281	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
62907	chr13	110914001	110914500	+	0	NA	intron (NR_104586, intron 1 of 4)	CpG	819	NM_017664	55608		NM_017664	ENSG00000088448	ANKRD10	-	ankyrin repeat domain 10	protein-coding
159348	chr3	13189621	13189880	+	0	NA	intron (NM_001376938, intron 1 of 15)	L2a|LINE|L2	93507	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
49575	chr12	26953071	26953230	+	0	NA	intron (NM_001171888, intron 1 of 4)	AluY|SINE|Alu	14680	NM_015633	26127		NM_015633	ENSG00000111790	FGFR1OP2	HSPC123-like|WIT3.0	FGFR1 oncogene partner 2	protein-coding
5760	chr1	26483001	26483200	+	0	NA	Intergenic	Intergenic	10660	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
82448	chr16	16362301	16363130	+	0	NA	intron (NR_146336, intron 20 of 34)	intron (NR_146336, intron 20 of 34)	-6161	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
162289	chr3	47406171	47406330	+	0	NA	intron (NM_001304482, intron 5 of 23)	intron (NM_001304482, intron 5 of 23)	25229	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
151373	chr21	45887651	45887950	+	0	NA	intron (NM_001382276, intron 6 of 18)	L1M5|LINE|L1	39650	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
359	chr1	1018471	1018630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1570	NM_001305275	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
127017	chr2	36960901	36961300	+	0	NA	intron (NM_003162, intron 1 of 17)	AluJb|SINE|Alu	5436	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
112756	chr19	7394721	7395730	+	0	NA	promoter-TSS (NM_015318)	promoter-TSS (NM_015318)	80	NM_015318	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
164514	chr3	63343771	63343930	+	0	NA	intron (NM_001130003, intron 2 of 5)	intron (NM_001130003, intron 2 of 5)	65542	NM_001130003	132204		NM_144642	ENSG00000163630	SYNPR	SPO	synaptoporin	protein-coding
32189	chr10	101692621	101693150	+	0	NA	intron (NM_001323541, intron 1 of 8)	intron (NM_001323541, intron 1 of 8)	2285	NM_022039	6468		NM_022039	ENSG00000107829	FBXW4	DAC|FBW4|FBWD4|SHFM3|SHSF3	F-box and WD repeat domain containing 4	protein-coding
42117	chr11	67609251	67609930	+	0	NA	exon (NM_007103, exon 4 of 10)	exon (NM_007103, exon 4 of 10)	2654	NM_001166102	4723		NM_007103	ENSG00000167792	NDUFV1	CI-51K|CI51KD|MC1DN4|UQOR1	NADH:ubiquinone oxidoreductase core subunit V1	protein-coding
11600	chr1	91647071	91647430	+	0	NA	Intergenic	HAL1ME|LINE|L1	146142	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
93952	chr17	21417571	21417930	+	0	NA	3' UTR (NM_021012, exon 3 of 3)	3' UTR (NM_021012, exon 3 of 3)	41393	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
190035	chr5	177511451	177511750	+	0	NA	promoter-TSS (NM_001375799)	promoter-TSS (NM_001375799)	-500	NM_001375799	79930		NM_024872	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
210212	chr7	99144001	99145380	+	0	NA	promoter-TSS (NM_001199847)	promoter-TSS (NM_001199847)	-582	NM_020429	57154		NM_020429	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
71812	chr15	21776221	21776650	+	0	NA	Intergenic	AluYm1|SINE|Alu	-40436	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
206827	chr7	37309921	37310800	+	0	NA	intron (NM_014800, intron 4 of 21)	intron (NM_014800, intron 4 of 21)	43308	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
136829	chr2	182763371	182763530	+	0	NA	intron (NR_073367, intron 21 of 22)	intron (NR_073367, intron 21 of 22)	47193	NM_001271581	54431		NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
192333	chr6	23620051	23620150	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-506115	NM_080723	140767		NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
69885	chr14	99347401	99348100	+	0	NA	Intergenic	Intergenic	-75553	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
207963	chr7	55167351	55167450	+	0	NA	intron (NM_001346941, intron 9 of 21)	intron (NM_001346941, intron 9 of 21)	21549	NR_047551	100507500		NR_047551	ENSG00000224057	EGFR-AS1	-	EGFR antisense RNA 1	ncRNA
89307	chr16	88718051	88718750	+	0	NA	intron (NM_001142864, intron 44 of 50)	L1MB7|LINE|L1	-2063	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
228834	chr9	112121771	112121950	+	0	NA	intron (NM_022486, intron 6 of 16)	intron (NM_022486, intron 6 of 16)	53437	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
77900	chr15	89143601	89144080	+	0	NA	intron (NM_152924, intron 3 of 10)	L1MB5|LINE|L1	55384	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
210983	chr7	101880851	101881150	+	0	NA	intron (NM_181552, intron 1 of 23)	intron (NM_181552, intron 1 of 23)	63374	NM_181552	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
213698	chr7	140189001	140189200	+	0	NA	Intergenic	AluY|SINE|Alu	11839	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
226428	chr9	70640301	70640500	+	0	NA	intron (NM_206947, intron 11 of 24)	intron (NM_206947, intron 11 of 24)	169684	NR_029621	406987		NR_029621	ENSG00000207935	MIR204	MIRN204|RDICC|miRNA204|mir-204	microRNA 204	ncRNA
65702	chr14	52745071	52745230	+	0	NA	intron (NM_001130701, intron 3 of 11)	AluSp|SINE|Alu	14984	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
153777	chr22	29582801	29583200	+	0	NA	Intergenic	Intergenic	-1887	NM_003634	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
166041	chr3	108601171	108601530	+	0	NA	intron (NM_014648, intron 1 of 32)	MER20|DNA|hAT-Charlie	11628	NM_014648	9666		NM_014648	ENSG00000198919	DZIP3	PPP1R66|UURF2|hRUL138	DAZ interacting zinc finger protein 3	protein-coding
190656	chr5	181241301	181241950	+	0	NA	TTS (NR_002592)	TTS (NR_002592)	264	NR_002592	619571		NR_002592	ENSG00000272296	SNORD96A	U96A	small nucleolar RNA, C/D box 96A	snoRNA
220257	chr8	97647201	97648080	+	0	NA	intron (NM_178812, intron 1 of 11)	intron (NM_178812, intron 1 of 11)	3456	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
156719	chr22	41786671	41787230	+	0	NA	intron (NM_152513, intron 26 of 30)	intron (NM_152513, intron 26 of 30)	-13729	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
33576	chr10	119493071	119493800	+	0	NA	Intergenic	L2b|LINE|L2	43098	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
37774	chr11	32176151	32176480	+	0	NA	Intergenic	Intergenic	-32403	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
116799	chr19	18529371	18529530	+	0	NA	Intergenic	AluJo|SINE|Alu	-7380	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
22678	chr1	223831671	223833180	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	13522	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
66031	chr14	58278171	58278330	+	0	NA	intron (NR_029435, intron 2 of 3)	intron (NR_029435, intron 2 of 3)	-9783	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
230493	chr9	128244651	128245280	+	0	NA	promoter-TSS (NR_029619)	promoter-TSS (NR_029619)	65	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
60333	chr13	40682951	40683550	+	0	NA	Intergenic	Intergenic	-16609	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
37615	chr11	20158451	20158950	+	0	NA	intron (NM_001029865, intron 2 of 3)	intron (NM_001029865, intron 2 of 3)	1775	NM_001029865	120237		NM_001029865	ENSG00000109851	DBX1	HLX1	developing brain homeobox 1	protein-coding
50670	chr12	48828871	48829230	+	0	NA	TTS (NM_001206917)	TTS (NM_001206917)	10554	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
163165	chr3	50168801	50169200	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	9981	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
191553	chr6	11700251	11700430	+	0	NA	Intergenic	Intergenic	78463	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
52237	chr12	54400351	54400450	+	0	NA	intron (NM_002205, intron 25 of 29)	L2a|LINE|L2	-9102	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
214535	chr7	150516701	150516900	+	0	NA	intron (NM_153236, intron 1 of 1)	L1MC5|LINE|L1	1928	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
127332	chr2	39099871	39101000	+	0	NA	intron (NM_001382394, intron 1 of 22)	L1MA9|LINE|L1	20616	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
190906	chr6	2790901	2792380	+	0	NA	Intergenic	L1ME4a|LINE|L1	-21264	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
183320	chr5	76713251	76713500	+	0	NA	TTS (NR_028375)	TTS (NR_028375)	972	NR_028375	100302746		NR_028375		NCRUPAR	NCRNA00193|ncR-uPAR	non-protein coding RNA, upstream of F2R/PAR1	ncRNA
147794	chr20	62628101	62628500	+	0	NA	Intergenic	Intergenic	-14203	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
107260	chr18	42023921	42024330	+	0	NA	intron (NM_002647, intron 13 of 24)	intron (NM_002647, intron 13 of 24)	68891	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
106975	chr18	31977221	31977530	+	0	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-34247	NM_014939	22878		NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex subunit 8	protein-coding
58639	chr12	132509121	132509380	+	0	NA	non-coding (NR_168498, exon 4 of 4)	non-coding (NR_168498, exon 4 of 4)	3844	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
110280	chr19	1820501	1820700	+	0	NA	intron (NM_020695, intron 5 of 15)	L1MC2|LINE|L1	-1489	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
157464	chr22	45271671	45271830	+	0	NA	Intergenic	Intergenic	-13199	NM_006953	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
7097	chr1	32077001	32077200	+	0	NA	intron (NM_018056, intron 4 of 8)	intron (NM_018056, intron 4 of 8)	4161	NM_001319678	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
86691	chr16	67524871	67525880	+	0	NA	intron (NR_104656, intron 1 of 1)	L2b|LINE|L2	3370	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
117052	chr19	18946951	18947250	+	0	NA	TTS (NR_134912)	TTS (NR_134912)	-5883	NM_004838	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
233915	chrX	1661141	1662350	+	0	NA	Intergenic	Intergenic	46612	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
151542	chr21	46526351	46526650	+	0	NA	intron (NM_206891, intron 8 of 19)	AluSq|SINE|Alu	64029	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
172351	chr4	1718001	1718900	+	0	NA	exon (NM_001127266, exon 2 of 4)	exon (NM_001127266, exon 2 of 4)	2873	NM_001127266	92305		NM_138385	ENSG00000168936	TMEM129	D4S2561E	transmembrane protein 129, E3 ubiquitin ligase	protein-coding
87852	chr16	75789201	75789550	+	0	NA	Intergenic	Intergenic	-62885	NM_001355613	105371346		NM_001355613	ENSG00000283755	CPHXL	CPHXL1	cytoplasmic polyadenylated homeobox like	protein-coding
229075	chr9	114356471	114356830	+	0	NA	intron (NM_001317952, intron 12 of 20)	MIR|SINE|MIR	26781	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
217609	chr8	29804401	29804600	+	0	NA	Intergenic	Intergenic	24004	NR_125817	101929470		NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
192528	chr6	25049921	25051130	+	0	NA	Intergenic	Intergenic	-8237	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
49673	chr12	29428001	29428280	+	0	NA	intron (NR_073172, intron 1 of 1)	MER90|LTR|ERV1	38846	NR_073170	101055625		NR_073170	ENSG00000257599	OVCH1-AS1	-	OVCH1 antisense RNA 1	ncRNA
17443	chr1	156681821	156682280	+	0	NA	Intergenic	Intergenic	-4643	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
65348	chr14	50335171	50335530	+	0	NA	intron (NM_001282236, intron 7 of 8)	intron (NM_001282236, intron 7 of 8)	23026	NM_015684	27109		NM_015684	ENSG00000125375	DMAC2L	ATP5S|ATPW|FB|HSU79253	distal membrane arm assembly component 2 like	protein-coding
148308	chr20	63734071	63734850	+	0	NA	intron (NM_181485, intron 4 of 6)	intron (NM_181485, intron 4 of 6)	-1241	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
105118	chr17	82215351	82216000	+	0	NA	Intergenic	Intergenic	-2833	NM_001367828	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
29140	chr10	68576951	68577050	+	0	NA	intron (NM_030625, intron 2 of 11)	AluY|SINE|Alu	16663	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
16246	chr1	153956971	153957130	+	0	NA	intron (NM_181715, intron 1 of 13)	intron (NM_181715, intron 1 of 13)	1562	NM_181715	200186		NM_181715	ENSG00000160741	CRTC2	TORC-2|TORC2	CREB regulated transcription coactivator 2	protein-coding
145383	chr20	41232201	41233100	+	0	NA	intron (NM_001384324, intron 2 of 4)	AluYe6|SINE|Alu	39606	NM_001384324	23051		NM_015035	ENSG00000174306	ZHX3	TIX1	zinc fingers and homeoboxes 3	protein-coding
218066	chr8	38915271	38915850	+	0	NA	intron (NM_021623, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	14214	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
53949	chr12	71844271	71844600	+	0	NA	intron (NR_027449, intron 1 of 15)	L2c|LINE|L2	4676	NM_022771	64786		NM_022771	ENSG00000121749	TBC1D15	RAB7-GAP	TBC1 domain family member 15	protein-coding
31197	chr10	91222651	91222750	+	0	NA	non-coding (NR_046310, exon 2 of 3)	non-coding (NR_046310, exon 2 of 3)	2037	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
110001	chr19	1425201	1425930	+	0	NA	intron (NM_001352035, intron 6 of 10)	intron (NM_001352035, intron 6 of 10)	-12831	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
120054	chr19	42049021	42049300	+	0	NA	intron (NM_001301030, intron 10 of 18)	L1ME3A|LINE|L1	16645	NM_002088	2901		NM_002088	ENSG00000105737	GRIK5	EAA2|GRIK2|GluK5|KA2	glutamate ionotropic receptor kainate type subunit 5	protein-coding
200500	chr6	135535901	135536390	+	0	NA	intron (NR_152845, intron 2 of 4)	intron (NR_152845, intron 2 of 4)	38344	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
217959	chr8	38268071	38269680	+	0	NA	TTS (NM_023034)	TTS (NM_023034)	345	NM_032483	84513		NM_032483	ENSG00000147535	PLPP5	DPPL1|HTPAP|PPAPDC1B	phospholipid phosphatase 5	protein-coding
394	chr1	1052371	1052730	+	0	NA	intron (NM_001305275, intron 35 of 38)	intron (NM_001305275, intron 35 of 38)	-7184	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
147693	chr20	62320171	62320680	+	0	NA	intron (NM_005560, intron 50 of 79)	intron (NM_005560, intron 50 of 79)	12132	NR_039915	100616340		NR_039915	ENSG00000284074	MIR4758	-	microRNA 4758	ncRNA
59754	chr13	30108371	30108530	+	0	NA	intron (NR_046998, intron 1 of 1)	intron (NR_046998, intron 1 of 1)	425	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
67068	chr14	67875251	67875750	+	0	NA	intron (NM_133509, intron 5 of 10)	Tigger3a|DNA|TcMar-Tigger	51908	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
7407	chr1	32942121	32942380	+	0	NA	intron (NM_001127361, intron 7 of 8)	intron (NM_001127361, intron 7 of 8)	22559	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
219407	chr8	70614851	70615630	+	0	NA	intron (NR_038881, intron 1 of 3)	L2|LINE|L2	6663	NR_038881	286190		NR_038881	ENSG00000246366	LACTB2-AS1	-	LACTB2 antisense RNA 1	ncRNA
182008	chr5	55324171	55324330	+	0	NA	intron (NM_015360, intron 3 of 26)	intron (NM_015360, intron 3 of 26)	16261	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
156687	chr22	41669951	41670250	+	0	NA	Intergenic	AluY|SINE|Alu	18767	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
110334	chr19	1870471	1870630	+	0	NA	Intergenic	AluJr|SINE|Alu	-6971	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
238104	chrX	136618921	136619180	+	0	NA	Intergenic	Intergenic	-20493	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
12530	chr1	108559171	108560600	+	0	NA	promoter-TSS (NM_001010883)	promoter-TSS (NM_001010883)	-215	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
194348	chr6	32894021	32895530	+	0	NA	non-coding (NR_037177, exon 1 of 2)	non-coding (NR_037177, exon 1 of 2)	599	NR_037178	100294145		NR_037177	ENSG00000289047	LOC100294145	-	uncharacterized LOC100294145	ncRNA
22367	chr1	217629351	217629700	+	0	NA	intron (NM_001297754, intron 1 of 5)	intron (NM_001297754, intron 1 of 5)	1565	NM_001297754	55105		NM_018040	ENSG00000092978	GPATCH2	CT110|GPATC2|PPP1R30|Pfa1	G-patch domain containing 2	protein-coding
101103	chr17	64984571	64985500	+	0	NA	Intergenic	Tigger16a|DNA|TcMar-Tigger	-9450	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
234036	chrX	3872301	3872700	+	0	NA	intron (NR_146581, intron 1 of 3)	intron (NR_146581, intron 1 of 3)	9813	NR_146578	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
145089	chr20	38680421	38680780	+	0	NA	Intergenic	Intergenic	-43886	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
42159	chr11	67791771	67792780	+	0	NA	non-coding (NR_024249, exon 4 of 4)	non-coding (NR_024249, exon 4 of 4)	13061	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
91820	chr17	7131001	7131400	+	0	NA	Intergenic	Intergenic	-16389	NM_001181	433		NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
238472	chrX	153343201	153343600	+	0	NA	intron (NM_001080485, intron 2 of 4)	intron (NM_001080485, intron 2 of 4)	7938	NR_162143	113219460		NR_162143		MIR12129	-	microRNA 12129	ncRNA
176125	chr4	83102021	83102480	+	0	NA	intron (NM_016619, intron 3 of 4)	AluSz|SINE|Alu	7639	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
285	chr1	941301	942100	+	0	NA	intron (NM_001385641, intron 8 of 13)	CpG-21	15969	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
148971	chr21	13893671	13894030	+	0	NA	Intergenic	THE1-int|LTR|ERVL-MaLR	40029	NR_146644	110091776		NR_146644		LOC110091776	-	ankyrin repeat domain 18B pseudogene	pseudo
77472	chr15	84503101	84503430	+	0	NA	non-coding (NR_033787, exon 1 of 1).2	non-coding (NR_033787, exon 1 of 1).2	690	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
26510	chr10	18662871	18663230	+	0	NA	intron (NM_178815, intron 1 of 5)	AluSx1|SINE|Alu	3619	NM_178815	221079		NM_178815	ENSG00000165997	ARL5B	ARL8	ADP ribosylation factor like GTPase 5B	protein-coding
60654	chr13	42577521	42577980	+	0	NA	intron (NM_003701, intron 1 of 4)	intron (NM_003701, intron 1 of 4)	3598	NM_003701	8600		NM_003701	ENSG00000120659	TNFSF11	CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf	TNF superfamily member 11	protein-coding
158970	chr3	10251301	10251580	+	0	NA	intron (NM_014760, intron 2 of 7)	AluSz|SINE|Alu	2981	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
131863	chr2	98703221	98704250	+	0	NA	intron (NM_012214, intron 2 of 15)	L2a|LINE|L2	27397	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
210310	chr7	99469521	99470500	+	0	NA	Intergenic	Intergenic	-2880	NM_001013258	285989		NM_213603	ENSG00000198556	ZNF789	-	zinc finger protein 789	protein-coding
172678	chr4	2740951	2741330	+	0	NA	TTS (NM_024309)	TTS (NM_024309)	15196	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
208864	chr7	73724701	73724930	+	0	NA	Intergenic	AluJo|SINE|Alu	-5146	NM_001165903	6804		NM_004603	ENSG00000106089	STX1A	HPC-1|P35-1|STX1|SYN1A	syntaxin 1A	protein-coding
218098	chr8	38974001	38974880	+	0	NA	TTS (NM_021623)	TTS (NM_021623)	212	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
98792	chr17	48215671	48215830	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-59239	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
89867	chr16	89636671	89637550	+	0	NA	intron (NM_004413, intron 6 of 10)	intron (NM_004413, intron 6 of 10)	16513	NM_004413	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
227933	chr9	94334671	94334930	+	0	NA	intron (NR_033937, intron 1 of 2)	intron (NR_033937, intron 1 of 2)	2324	NR_033937	100132077		NR_033937		LOC100132077	-	uncharacterized LOC100132077	ncRNA
25485	chr10	6990971	6991200	+	0	NA	Intergenic	L2b|LINE|L2	195699	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
181742	chr5	50705251	50706050	+	0	NA	intron (NM_024615, intron 2 of 25)	AluSz6|SINE|Alu	38236	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
163504	chr3	51386871	51387030	+	0	NA	intron (NM_006010, intron 2 of 3)	intron (NM_006010, intron 2 of 3)	1659	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
125871	chr2	24543201	24543600	+	0	NA	intron (NM_001362954, intron 1 of 23)	MSTB2|LTR|ERVL-MaLR	-41077	NM_147233	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
76082	chr15	72483951	72484050	+	0	NA	intron (NM_005744, intron 1 of 13)	AluSq2|SINE|Alu	9670	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
223365	chr8	143875801	143876400	+	0	NA	intron (NM_031308, intron 1 of 1)	ERV3-16A3_I-int|LTR|ERVL	2367	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238565	chrX	153815801	153816000	+	0	NA	intron (NM_032512, intron 1 of 7)	intron (NM_032512, intron 1 of 7)	14059	NM_001303516	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
85436	chr16	50395871	50396350	+	0	NA	promoter-TSS (NR_146572)	promoter-TSS (NR_146572)	-977	NR_146572	105371248		NR_146572	ENSG00000261092	LINC02178	-	long intergenic non-protein coding RNA 2178	ncRNA
94109	chr17	27879901	27880300	+	0	NA	intron (NM_001076680, intron 3 of 3)	intron (NM_001076680, intron 3 of 3)	13265	NM_001076680	201229		NM_001076680	ENSG00000232859	LYRM9	C17orf108|HSD24	LYR motif containing 9	protein-coding
63490	chr13	114177671	114177830	+	0	NA	Intergenic	Intergenic	-45127	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
217731	chr8	30653821	30654080	+	0	NA	intron (NM_002095, intron 1 of 7)	AluJb|SINE|Alu	3668	NM_001348353	2961		NM_002095	ENSG00000197265	GTF2E2	FE|TF2E2|TFIIE-B|TTD6	general transcription factor IIE subunit 2	protein-coding
209391	chr7	76317121	76319600	+	0	NA	Intergenic	CpG	15687	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
57585	chr12	122363071	122363230	+	0	NA	intron (NM_001247997, intron 4 of 25)	intron (NM_001247997, intron 4 of 25)	-32392	NR_045382	100507066		NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
221812	chr8	127996421	127997280	+	0	NA	intron (NR_003367, intron 5 of 8)	MIRc|SINE|MIR	-12048	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
69770	chr14	99169871	99170280	+	0	NA	3' UTR (NM_138576, exon 4 of 4)	3' UTR (NM_138576, exon 4 of 4)	102122	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
135481	chr2	161421421	161422230	+	0	NA	intron (NM_006593, intron 5 of 5)	intron (NM_006593, intron 5 of 5)	5528	NM_006593	10716		NM_006593	ENSG00000136535	TBR1	AUTS5|IDDAS|TBR-1|TES-56	T-box brain transcription factor 1	protein-coding
74206	chr15	56110251	56110350	+	0	NA	intron (NM_001370554, intron 4 of 9)	SVA_D|Retroposon|SVA	79632	NM_001370554	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
31029	chr10	88865401	88865730	+	0	NA	Intergenic	Intergenic	-13721	NM_144590	118932		NM_144590	ENSG00000152766	ANKRD22	-	ankyrin repeat domain 22	protein-coding
35021	chr11	554351	555700	+	0	NA	TTS (NM_198075)	TTS (NM_198075)	-4237	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
98981	chr17	48732951	48733650	+	0	NA	Intergenic	CpG	-4550	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
155209	chr22	37847171	37848080	+	0	NA	TTS (NR_030396)	TTS (NR_030396)	149	NR_030396	724029		NR_030396	ENSG00000207696	MIR659	MIRN659|hsa-mir-659|mir-659	microRNA 659	ncRNA
162937	chr3	49473171	49473630	+	0	NA	intron (NM_001177634, intron 2 of 5)	AluYk4|SINE|Alu	3133	NM_004393	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
186519	chr5	138354771	138355500	+	0	NA	intron (NM_016604, intron 1 of 23)	intron (NM_016604, intron 1 of 23)	2450	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
28796	chr10	62108621	62109080	+	0	NA	Intergenic	Intergenic	59493	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
63465	chr13	114138971	114139280	+	0	NA	Intergenic	Intergenic	-6502	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
183577	chr5	80165571	80165930	+	0	NA	intron (NM_001174072, intron 7 of 11)	intron (NM_001174072, intron 7 of 11)	-82085	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
174967	chr4	49514071	49514230	+	0	NA	Intergenic	Intergenic	527508	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
195747	chr6	39926421	39927080	+	0	NA	intron (NM_001358533, intron 1 of 9)	intron (NM_001358533, intron 1 of 9)	966	NM_005943	4337		NM_005942	ENSG00000124615	MOCS1	MIG11|MOCOD|MOCS1A|MOCS1B	molybdenum cofactor synthesis 1	protein-coding
50521	chr12	47832721	47833800	+	0	NA	Intergenic	Intergenic	-13357	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
202881	chr6	159973701	159974650	+	0	NA	intron (NM_000876, intron 1 of 47)	L1M5|LINE|L1	5093	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
48537	chr12	10213301	10214730	+	0	NA	intron (NM_031412, intron 1 of 3)	intron (NM_031412, intron 1 of 3)	1138	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
228882	chr9	112682401	112682600	+	0	NA	Intergenic	L2c|LINE|L2	35617	NR_138056	58493		NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
78836	chr15	99797071	99797650	+	0	NA	intron (NR_003260, intron 4 of 4)	intron (NR_003260, intron 4 of 4)	9567	NR_003260	196968		NM_194295	ENSG00000290767	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	dynamin 1 pseudogene 46	pseudo
139899	chr2	230715351	230716000	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	2127	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
182464	chr5	62333151	62333250	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	26994	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
209897	chr7	91946401	91946850	+	0	NA	intron (NM_147185, intron 1 of 49)	AluJb|SINE|Alu	5763	NM_005751	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
93659	chr17	19198201	19198600	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-8155	NR_006881	780853		NR_006881		SNORD3C	RNU3-3|U3-3	small nucleolar RNA, C/D box 3C	snoRNA
212531	chr7	128839701	128839900	+	0	NA	intron (NM_001458, intron 8 of 47)	intron (NM_001458, intron 8 of 47)	9394	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
102030	chr17	74857151	74857250	+	0	NA	intron (NM_001278553, intron 1 of 11)	MamTip2|DNA|hAT-Tip100	2684	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
3403	chr1	15755471	15755830	+	0	NA	promoter-TSS (NM_001350151)	promoter-TSS (NM_001350151)	-988	NM_001350151	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
43014	chr11	73989121	73989430	+	0	NA	Intergenic	Intergenic	-6073	NM_001381944	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
69250	chr14	92923251	92924150	+	0	NA	intron (NM_001301690, intron 1 of 6).2	intron (NM_001301690, intron 1 of 6).2	550	NM_001301690	1113		NM_001275	ENSG00000100604	CHGA	CGA|PHE5|PHES	chromogranin A	protein-coding
238	chr1	902071	902230	+	0	NA	Intergenic	Intergenic	17542	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
64832	chr14	35120001	35120500	+	0	NA	intron (NM_017917, intron 1 of 12)	L2|LINE|L2	2292	NM_001305155	55012		NM_017917	ENSG00000092020	PPP2R3C	C14orf10|G4-1|G5pr|GDRM|MEGD|SPGF36	protein phosphatase 2 regulatory subunit B''gamma	protein-coding
17819	chr1	159869151	159869450	+	0	NA	Intergenic	Intergenic	-6643	NM_001013661	391123		NM_001013661	ENSG00000243284	VSIG8	-	V-set and immunoglobulin domain containing 8	protein-coding
181597	chr5	43483351	43485830	+	0	NA	promoter-TSS (NM_001377400)	promoter-TSS (NM_001377400)	-203	NM_001377396	64417		NM_022483	ENSG00000151881	TMEM267	C5orf28	transmembrane protein 267	protein-coding
179575	chr4	185250331	185250530	+	0	NA	intron (NM_001378032, intron 2 of 19)	L1ME2|LINE|L1	40873	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
212816	chr7	130419621	130420080	+	0	NA	3' UTR (NM_001257160, exon 3 of 3)	3' UTR (NM_001257160, exon 3 of 3)	21166	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
15370	chr1	150112721	150113180	+	0	NA	intron (NR_103998, intron 13 of 13)	MER21C|LTR|ERVL	-36484	NM_001304722	51177		NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding
147288	chr20	57610271	57610630	+	0	NA	intron (NM_030776, intron 6 of 7)	intron (NM_030776, intron 6 of 7)	9976	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
164458	chr3	59542471	59542830	+	0	NA	Intergenic	Intergenic	115847	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
202387	chr6	157832401	157832950	+	0	NA	intron (NM_016224, intron 1 of 17)	THE1C|LTR|ERVL-MaLR	9429	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
132389	chr2	105780271	105780430	+	0	NA	intron (NM_001004722, intron 1 of 3)	(AC)n|Simple_repeat|Simple_repeat	35287	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
94307	chr17	28747101	28747950	+	0	NA	intron (NM_004295, intron 2 of 6)	intron (NM_004295, intron 2 of 6)	3514	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
68202	chr14	76862571	76863000	+	0	NA	intron (NR_169573, intron 10 of 12)	L2a|LINE|L2	36377	NR_169572	145497		NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
173131	chr4	6621071	6621780	+	0	NA	3' UTR (NM_001292038, exon 19 of 19)	3' UTR (NM_001292038, exon 19 of 19)	-18666	NM_033296	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
157008	chr22	42521271	42521980	+	0	NA	Intergenic	AluSc|SINE|Alu	-1829	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
237130	chrX	106619871	106620100	+	0	NA	intron (NM_018015, intron 1 of 13)	Charlie1b|DNA|hAT-Charlie	8007	NM_018015	55086		NM_018015	ENSG00000147231	RADX	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein-coding
223957	chr9	1171471	1171830	+	0	NA	Intergenic	Intergenic	120163	NM_001370532	10655		NM_006557	ENSG00000173253	DMRT2	DSXL-2	doublesex and mab-3 related transcription factor 2	protein-coding
195592	chr6	37547151	37548050	+	0	NA	Intergenic	Intergenic	7822	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
137636	chr2	197386501	197386900	+	0	NA	Intergenic	FLAM_C|SINE|Alu	48328	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
141838	chr20	438221	439250	+	0	NA	exon (NM_144628, exon 8 of 8)	exon (NM_144628, exon 8 of 8)	23798	NR_111901	128637		NM_144628	ENSG00000125875	TBC1D20	C20orf140|WARBM4	TBC1 domain family member 20	protein-coding
179462	chr4	184453301	184454050	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	20875	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
14193	chr1	122818251	122818350	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1299188	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
3093	chr1	12198101	12198500	+	0	NA	intron (NM_001066, intron 8 of 9)	MIRb|SINE|MIR	6587	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
39990	chr11	62621451	62623020	+	0	NA	promoter-TSS (NM_012200)	promoter-TSS (NM_012200)	-249	NM_001288723	26229		NM_012200	ENSG00000149541	B3GAT3	GLCATI|JDSCD|glcUAT-I	beta-1,3-glucuronyltransferase 3	protein-coding
188481	chr5	154767421	154768130	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	10621	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
114303	chr19	11813571	11814800	+	0	NA	promoter-TSS (NM_152357)	promoter-TSS (NM_152357)	-88	NM_152357	126070		NM_152357	ENSG00000171295	ZNF440	-	zinc finger protein 440	protein-coding
119268	chr19	39528321	39528780	+	0	NA	Intergenic	L1MC4a|LINE|L1	4302	NM_152361	126272		NM_152361	ENSG00000176401	EID2B	EID-2B|EID-3	EP300 interacting inhibitor of differentiation 2B	protein-coding
223607	chr8	144311801	144312230	+	0	NA	exon (NM_005526, exon 9 of 13)	exon (NM_005526, exon 9 of 13)	5300	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
125377	chr2	11156621	11157350	+	0	NA	intron (NM_001282710, intron 1 of 5)	intron (NM_001282710, intron 1 of 5)	1518	NM_152391	130814		NM_152391	ENSG00000162976	SLC66A3	C2orf22|PQLC3	solute carrier family 66 member 3	protein-coding
174355	chr4	38759501	38759850	+	0	NA	Intergenic	Intergenic	23315	NM_030956	81793		NM_030956	ENSG00000174123	TLR10	CD290	toll like receptor 10	protein-coding
21947	chr1	207886221	207886480	+	0	NA	TTS (NM_001773)	TTS (NM_001773)	24775	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
60215	chr13	40490001	40490500	+	0	NA	Intergenic	MIR|SINE|MIR	-9244	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
193206	chr6	29780101	29780300	+	0	NA	Intergenic	L1PA6|LINE|L1	-11706	NR_132323	352962		NM_001207043	ENSG00000290710	HLA-V	HLA-75|dJ377H14.4	major histocompatibility complex, class I, V (pseudogene)	pseudo
35856	chr11	2370021	2370450	+	0	NA	intron (NR_108080, intron 1 of 2)	MER89|LTR|ERV1	-5942	NM_001297649	975		NM_004356	ENSG00000110651	CD81	CVID6|S5.7|TAPA1|TSPAN28	CD81 molecule	protein-coding
27894	chr10	41880451	41881380	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	487130	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
80623	chr16	2974921	2976200	+	0	NA	exon (NM_001258451, exon 4 of 9)	exon (NM_001258451, exon 4 of 9)	4886	NM_004203	9088		NM_004203	ENSG00000127564	PKMYT1	MYT1|PPP1R126	protein kinase, membrane associated tyrosine/threonine 1	protein-coding
230215	chr9	127851471	127852250	+	0	NA	intron (NM_001114753, intron 1 of 14)	AluSg|SINE|Alu	2798	NM_001114753	2022		NM_000118	ENSG00000106991	ENG	END|HHT1|ORW1	endoglin	protein-coding
209436	chr7	76391051	76391450	+	0	NA	intron (NM_080744, intron 10 of 10)	AluSz|SINE|Alu	-6272	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
42357	chr11	68550121	68550650	+	0	NA	intron (NR_147970, intron 4 of 23)	intron (NR_147970, intron 4 of 23)	89633	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
43837	chr11	87030651	87030980	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-7119	NR_033149	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
77734	chr15	85723921	85725000	+	0	NA	intron (NM_007200, intron 26 of 36)	intron (NM_007200, intron 26 of 36)	34265	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
39965	chr11	62572621	62576230	+	0	NA	promoter-TSS (NM_001404)	promoter-TSS (NM_001404)	-534	NM_001404	1937		NM_001404	ENSG00000254772	EEF1G	EF1G|GIG35	eukaryotic translation elongation factor 1 gamma	protein-coding
73536	chr15	43826421	43827490	+	0	NA	promoter-TSS (NM_001167941)	promoter-TSS (NM_001167941)	-47	NM_024908	79968		NM_024908	ENSG00000092470	WDR76	CDW14|CMR1	WD repeat domain 76	protein-coding
205642	chr7	22699051	22699150	+	0	NA	Intergenic	L2b|LINE|L2	-28100	NM_001318095	3569		NM_000600	ENSG00000136244	IL6	BSF-2|BSF2|CDF|HGF|HSF|IFN-beta-2|IFNB2|IL-6	interleukin 6	protein-coding
113980	chr19	10821321	10822330	+	0	NA	intron (NM_001005362, intron 15 of 19)	AluSp|SINE|Alu	-4329	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
181411	chr5	40716221	40716480	+	0	NA	exon (NM_012382, exon 5 of 5)	exon (NM_012382, exon 5 of 5)	36435	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
38876	chr11	47373821	47374950	+	0	NA	intron (NM_003120, intron 2 of 4)	intron (NM_003120, intron 2 of 4)	4162	NM_003120	6688		NM_003120	ENSG00000066336	SPI1	AGM10|OF|PU.1|SFPI1|SPI-1|SPI-A	Spi-1 proto-oncogene	protein-coding
114009	chr19	10867871	10868530	+	0	NA	intron (NM_001136482, intron 6 of 6)	intron (NM_001136482, intron 6 of 6)	-3353	NM_199141	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
74188	chr15	55648351	55648650	+	0	NA	intron (NM_173814, intron 11 of 19)	intron (NM_173814, intron 11 of 19)	-59529	NM_015617	26108		NM_015617	ENSG00000171016	PYGO1	-	pygopus family PHD finger 1	protein-coding
111689	chr19	4272171	4272530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6719	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
120440	chr19	44259801	44260080	+	0	NA	promoter-TSS (NM_001207005)	promoter-TSS (NM_001207005)	26	NM_181756	353355		NM_181756	ENSG00000159915	ZNF233	-	zinc finger protein 233	protein-coding
61847	chr13	76894601	76894950	+	0	NA	Intergenic	L2a|LINE|L2	-8370	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
134928	chr2	151296551	151296650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6932	NM_004688	9111		NM_004688	ENSG00000123609	NMI	-	N-myc and STAT interactor	protein-coding
22169	chr1	212253701	212253900	+	0	NA	intron (NR_125984, intron 1 of 3)	AluJb|SINE|Alu	-19064	NR_125982	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
67994	chr14	74945201	74945680	+	0	NA	intron (NM_001207012, intron 5 of 5)	intron (NM_001207012, intron 5 of 5)	10324	NM_001293643	5228		NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
72591	chr15	34994071	34994230	+	0	NA	Intergenic	Intergenic	-5863	NM_014106	54989		NM_014106	ENSG00000198146	ZNF770	PRO1914	zinc finger protein 770	protein-coding
13482	chr1	114671421	114671900	+	0	NA	Intergenic	Intergenic	-1611	NM_001256404	163259		NM_198459	ENSG00000175984	DENND2C	dJ1156J9.1	DENN domain containing 2C	protein-coding
54718	chr12	93521321	93521580	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-48519	NM_003877	8835		NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
31399	chr10	95284951	95285280	+	0	NA	intron (NM_020992, intron 1 of 6)	intron (NM_020992, intron 1 of 6)	5888	NM_020992	9124		NM_020992	ENSG00000107438	PDLIM1	CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1	PDZ and LIM domain 1	protein-coding
172857	chr4	3295571	3295730	+	0	NA	Intergenic	AluSq2|SINE|Alu	-18497	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
35391	chr11	1343501	1344500	+	0	NA	Intergenic	L1M5|LINE|L1	34292	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
197728	chr6	87129371	87129530	+	0	NA	Intergenic	Tigger20a|DNA|TcMar-Tigger	-26115	NM_015021	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
50409	chr12	47360571	47361780	+	0	NA	Intergenic	Intergenic	3094	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
104513	chr17	81232951	81234500	+	0	NA	intron (NM_144679, intron 5 of 11)	intron (NM_144679, intron 5 of 11)	5018	NR_135654	105371925		NR_135654		LOC105371925	-	uncharacterized LOC105371925	ncRNA
19748	chr1	181324951	181325300	+	0	NA	Intergenic	Intergenic	88737	NR_046249	100287948		NR_046249	ENSG00000179452	LINC01699	GM140	long intergenic non-protein coding RNA 1699	ncRNA
95292	chr17	35528921	35529180	+	0	NA	intron (NM_001363830, intron 1 of 4)	L1PA7|LINE|L1	8811	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
137114	chr2	190996301	190996900	+	0	NA	intron (NM_139266, intron 9 of 22)	intron (NM_139266, intron 9 of 22)	17571	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
125520	chr2	12737051	12737350	+	0	NA	promoter-TSS (NR_036072)	promoter-TSS (NR_036072)	-167	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
118619	chr19	36915501	36916830	+	0	NA	promoter-TSS (NM_001204837)	promoter-TSS (NM_001204837)	-126	NM_001171979	374899		NM_001037232	ENSG00000185869	ZNF829	-	zinc finger protein 829	protein-coding
56593	chr12	118016151	118017300	+	0	NA	promoter-TSS (NM_007370)	promoter-TSS (NM_007370)	22	NM_007370	5985		NM_007370	ENSG00000111445	RFC5	RFC36	replication factor C subunit 5	protein-coding
158699	chr3	6272551	6272650	+	0	NA	Intergenic	L1PA3|LINE|L1	532849	NR_110123	101927347		NR_110123	ENSG00000226258	GRM7-AS3	-	GRM7 antisense RNA 3	ncRNA
74881	chr15	63582971	63584330	+	0	NA	intron (NR_046342, intron 12 of 15)	L1MB4|LINE|L1	-13737	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
159216	chr3	12898721	12899580	+	0	NA	3' UTR (NM_001134382, exon 14 of 14)	3' UTR (NM_001134382, exon 14 of 14)	-13939	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
111560	chr19	4051001	4051400	+	0	NA	intron (NM_015898, intron 2 of 2)	intron (NM_015898, intron 2 of 2)	14329	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
119296	chr19	39826751	39826850	+	0	NA	exon (NM_006483, exon 9 of 11).2	exon (NM_006483, exon 9 of 11).2	3002	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
201061	chr6	142545251	142545350	+	0	NA	intron (NR_027312, intron 1 of 2)	LTR33|LTR|ERVL	92536	NR_027311	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
175459	chr4	72112651	72112750	+	0	NA	intron (NM_001144756, intron 2 of 4)	intron (NM_001144756, intron 2 of 4)	73568	NM_053036	10886		NM_004885	ENSG00000056291	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
20032	chr1	185314121	185314880	+	0	NA	intron (NM_006469, intron 1 of 14)	intron (NM_006469, intron 1 of 14)	2743	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
102217	chr17	75229751	75230050	+	0	NA	intron (NM_024844, intron 11 of 18)	intron (NM_024844, intron 11 of 18)	24221	NM_024844	79902		NM_024844	ENSG00000125450	NUP85	FROUNT|NPHS17|Nup75	nucleoporin 85	protein-coding
232219	chr9	134370251	134370700	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-8820	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
59274	chr13	24223821	24224600	+	0	NA	exon (NM_001286792, exon 4 of 15)	exon (NM_001286792, exon 4 of 15)	30229	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
210163	chr7	98284171	98284930	+	0	NA	intron (NM_001159491, intron 2 of 2)	intron (NM_001159491, intron 2 of 2)	2864	NM_015379	25798		NM_015379	ENSG00000164713	BRI3	I3	brain protein I3	protein-coding
234584	chrX	19772201	19773100	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	27123	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
94936	chr17	32016071	32016600	+	0	NA	intron (NM_001321350, intron 1 of 14)	intron (NM_001321350, intron 1 of 14)	-4773	NM_052888	114659		NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
207183	chr7	43617571	43617730	+	0	NA	intron (NR_135582, intron 6 of 6)	L2b|LINE|L2	34542	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
19302	chr1	172946951	172947320	+	0	NA	Intergenic	Intergenic	103806	NM_005092	8995		NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	TNF superfamily member 18	protein-coding
95561	chr17	36931921	36932350	+	0	NA	TTS (NR_135668)	TTS (NR_135668)	4526	NR_135670	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
51916	chr12	53682801	53683000	+	0	NA	Intergenic	AluY|SINE|Alu	-6570	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
91569	chr17	5122801	5123800	+	0	NA	promoter-TSS (NM_001320953)	promoter-TSS (NM_001320953)	-184	NM_014519	7775		NM_014519	ENSG00000167840	ZNF232	ZSCAN11	zinc finger protein 232	protein-coding
25296	chr10	6188571	6188930	+	0	NA	intron (NM_001282630, intron 1 of 14)	L1MB2|LINE|L1	-14182	NM_001363545	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
37254	chr11	14640501	14640700	+	0	NA	intron (NM_148976, intron 1 of 10)	intron (NM_148976, intron 1 of 10)	3034	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
204885	chr7	6025921	6027100	+	0	NA	intron (NM_014413, intron 14 of 14)	intron (NM_014413, intron 14 of 14)	-4866	NM_001271700	100310846		NM_001271700	ENSG00000157999	ANKRD61	-	ankyrin repeat domain 61	protein-coding
202014	chr6	152636901	152637730	+	0	NA	promoter-TSS (NM_182961)	promoter-TSS (NM_182961)	47	NM_182961	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
214902	chr7	151443051	151443150	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-2287	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
72262	chr15	30623251	30623600	+	0	NA	intron (NR_157594, intron 1 of 4)	AluSz|SINE|Alu	2353	NR_157596	102725021		NR_157593		ARHGAP11B-DT	-	ARHGAP11B divergent transcript	ncRNA
118787	chr19	38399021	38399480	+	0	NA	non-coding (NR_073032, exon 6 of 6)	non-coding (NR_073032, exon 6 of 6)	-3885	NM_174905	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
19971	chr1	184965871	184966530	+	0	NA	intron (NM_052966, intron 1 of 13)	MLT1H|LTR|ERVL-MaLR	8308	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
74723	chr15	63185451	63185950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3906	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
143745	chr20	32364221	32364930	+	0	NA	intron (NM_001363734, intron 1 of 10)	FAM|SINE|Alu	5510	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
37432	chr11	17386251	17387250	+	0	NA	3' UTR (NM_001166290, exon 2 of 2)	3' UTR (NM_001166290, exon 2 of 2)	1909	NM_000525	3767		NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|PNDM2|TNDM3	potassium inwardly rectifying channel subfamily J member 11	protein-coding
228750	chr9	110126351	110126650	+	0	NA	intron (NM_001136562, intron 1 of 3)	intron (NM_001136562, intron 1 of 3)	999	NM_001136562	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
142594	chr20	5568871	5569680	+	0	NA	intron (NM_019593, intron 12 of 19)	intron (NM_019593, intron 12 of 19)	41731	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
130385	chr2	85310871	85311100	+	0	NA	TTS (NM_031283)	TTS (NM_031283)	17004	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
124778	chr2	7428921	7429250	+	0	NA	intron (NR_038432, intron 3 of 5)	intron (NR_038432, intron 3 of 5)	7824	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
18350	chr1	161217401	161218050	+	0	NA	intron (NM_004106, intron 1 of 4)	intron (NM_004106, intron 1 of 4)	2430	NM_004106	2207		NM_004106	ENSG00000158869	FCER1G	FCRG	Fc epsilon receptor Ig	protein-coding
4653	chr1	22142731	22143880	+	0	NA	promoter-TSS (NM_030761)	promoter-TSS (NM_030761)	-208	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
141467	chr2	241068801	241069000	+	0	NA	intron (NM_001080437, intron 22 of 31)	intron (NM_001080437, intron 22 of 31)	33387	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
214652	chr7	150800151	150801630	+	0	NA	promoter-TSS (NM_001362692)	promoter-TSS (NM_001362692)	121	NM_018487	55365		NM_018487	ENSG00000002933	TMEM176A	GS188|HCA112|MS4B1	transmembrane protein 176A	protein-coding
24932	chr10	1149701	1150230	+	0	NA	Intergenic	Intergenic	-9803	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
111717	chr19	4329501	4330780	+	0	NA	intron (NM_001013841, intron 4 of 12)	intron (NM_001013841, intron 4 of 12)	8687	NM_001013841	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
639	chr1	1342051	1342730	+	0	NA	exon (NM_001330311, exon 3 of 15)	exon (NM_001330311, exon 3 of 15)	-2682	NR_106866	102466740		NR_106866	ENSG00000284372	MIR6808	hsa-mir-6808	microRNA 6808	ncRNA
151797	chr22	18197571	18197730	+	0	NA	intron (NR_136570, intron 3 of 11)	intron (NR_136570, intron 3 of 11)	8259	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
132083	chr2	101299751	101300280	+	0	NA	intron (NM_173647, intron 1 of 6)	MIRb|SINE|MIR	8686	NM_173647	284996		NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
90036	chr16	89905401	89905900	+	0	NA	intron (NM_014972, intron 14 of 17)	intron (NM_014972, intron 14 of 17)	-13212	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
199625	chr6	119490251	119490350	+	0	NA	intron (NR_046100, intron 1 of 5)	L1PB1|LINE|L1	1002	NR_046100	285762		NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
91738	chr17	6701721	6702000	+	0	NA	intron (NM_001284510, intron 4 of 10)	intron (NM_001284510, intron 4 of 10)	11509	NM_001284510	284111		NM_177550	ENSG00000141485	SLC13A5	DEE25|EIEE25|INDY|NACT|mIndy	solute carrier family 13 member 5	protein-coding
146981	chr20	53022151	53022250	+	0	NA	intron (NM_173485, intron 1 of 2)	L4_C_Mam|LINE|RTE-X	49842	NM_173485	128553		NM_173485	ENSG00000182463	TSHZ2	C20orf17|OVC10-2|TSH2|ZABC2|ZNF218	teashirt zinc finger homeobox 2	protein-coding
130559	chr2	85706871	85707730	+	0	NA	Intergenic	Intergenic	12942	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
200557	chr6	136272371	136272730	+	0	NA	intron (NM_001301038, intron 7 of 12)	MIRb|SINE|MIR	17296	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
192601	chr6	26018701	26018900	+	0	NA	Intergenic	Intergenic	-1013	NM_005325	3024		NM_005325	ENSG00000124610	H1-1	H1.1|H1A|H1F1|HIST1|HIST1H1A	H1.1 linker histone, cluster member	protein-coding
236482	chrX	71638051	71638780	+	0	NA	Intergenic	Intergenic	-19904	NM_001504	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
3965	chr1	18655551	18655850	+	0	NA	intron (NM_001135254, intron 4 of 8)	intron (NM_001135254, intron 4 of 8)	24854	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
195768	chr6	40444851	40444950	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	66563	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
174948	chr4	49141751	49142400	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	155433	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
165588	chr3	101590851	101591550	+	0	NA	intron (NM_020357, intron 4 of 4)	intron (NM_020357, intron 4 of 4)	17020	NM_020357	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
17484	chr1	156719601	156719800	+	0	NA	Intergenic	Intergenic	8739	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
63992	chr14	22383521	22383980	+	0	NA	intron (NR_148361, intron 2 of 4)	intron (NR_148361, intron 2 of 4)	49003	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
168503	chr3	143763601	143763800	+	0	NA	intron (NM_173653, intron 4 of 15)	intron (NM_173653, intron 4 of 15)	84768	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
127689	chr2	43207371	43208130	+	0	NA	Intergenic	Intergenic	18856	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
84265	chr16	30041951	30042280	+	0	NA	Intergenic	MER106A|DNA|hAT-Charlie	-5585	NM_001352173	83723		NM_031478	ENSG00000149926	TLCD3B	CORD22|FAM57B|FP1188	TLC domain containing 3B	protein-coding
63823	chr14	21455201	21456930	+	0	NA	promoter-TSS (NM_001170629)	promoter-TSS (NM_001170629)	58	NM_001170629	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
25761	chr10	11017701	11018580	+	0	NA	promoter-TSS (NM_001326344)	promoter-TSS (NM_001326344)	210	NM_006561	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
219450	chr8	73011401	73011800	+	0	NA	intron (NM_003218, intron 1 of 8)	Tigger1|DNA|TcMar-Tigger	2736	NM_017489	7013		NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding
21769	chr1	206918871	206919030	+	0	NA	intron (NM_001193338, intron 1 of 6)	MER115|DNA|hAT-Tip100	2991	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
203863	chr7	1464301	1464500	+	0	NA	Intergenic	Intergenic	-4930	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
129487	chr2	69605551	69605850	+	0	NA	intron (NM_001371577, intron 2 of 14)	L1MD2|LINE|L1	38038	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
48251	chr12	8444551	8445250	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-11062	NM_001317999	93978		NM_001007033	ENSG00000205846	CLEC6A	CLEC4N|CLECSF10|dectin-2|hDECTIN-2	C-type lectin domain containing 6A	protein-coding
125399	chr2	11582621	11583080	+	0	NA	intron (NM_148903, intron 7 of 9)	intron (NM_148903, intron 7 of 9)	40164	NM_033090	9687		NM_014668	ENSG00000196208	GREB1	-	growth regulating estrogen receptor binding 1	protein-coding
192951	chr6	27819621	27819980	+	0	NA	Intergenic	MER34A1|LTR|ERV1	-4292	NM_021968	8363		NM_021968	ENSG00000197238	H4C11	H4-16|H4/e|H4C1|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2iv|H4FE|HIST1H4J|TEBIVANED2|TEVANED2|dJ160A22.2	H4 clustered histone 11	protein-coding
21538	chr1	205977371	205977800	+	0	NA	non-coding (NR_110984, exon 4 of 4)	non-coding (NR_110984, exon 4 of 4)	16854	NM_177403	338382		NM_177403	ENSG00000276600	RAB7B	RAB7	RAB7B, member RAS oncogene family	protein-coding
54386	chr12	89878451	89878550	+	0	NA	Intergenic	AluSx3|SINE|Alu	-69193	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
89668	chr16	89368621	89369550	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	48633	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
86029	chr16	57532471	57533100	+	0	NA	intron (NM_033212, intron 1 of 8)	intron (NM_033212, intron 1 of 8)	3786	NM_033212	92922		NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
56469	chr12	116115151	116115250	+	0	NA	intron (NM_015335, intron 2 of 30)	L1ME1|LINE|L1	33454	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
40097	chr11	62797801	62798100	+	0	NA	intron (NM_006362, intron 11 of 20)	AluSz|SINE|Alu	-5179	NR_106769	102465257		NR_106769	ENSG00000274066	MIR6514	hsa-mir-6514|mir-6514	microRNA 6514	ncRNA
16074	chr1	153493551	153494050	+	0	NA	Intergenic	Intergenic	-33149	NM_002963	6278		NM_002963	ENSG00000143556	S100A7	PSOR1|S100A7c	S100 calcium binding protein A7	protein-coding
84290	chr16	30080801	30081450	+	0	NA	intron (NM_001303507, intron 2 of 7)	intron (NM_001303507, intron 2 of 7)	5131	NM_001303507	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
127560	chr2	42360701	42362500	+	0	NA	promoter-TSS (NR_134947)	promoter-TSS (NR_134947)	-357	NM_001319040	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
220081	chr8	94009151	94009950	+	0	NA	Intergenic	L1PA4|LINE|L1	92603	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
156980	chr22	42496671	42496830	+	0	NA	Intergenic	AluJo|SINE|Alu	-3829	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
77970	chr15	89397551	89398250	+	0	NA	non-coding (NR_133001, exon 7 of 7)	non-coding (NR_133001, exon 7 of 7)	-2271	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
93351	chr17	18225121	18226650	+	0	NA	intron (NM_004140, intron 1 of 22)	G-rich|Low_complexity|Low_complexity	250	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
92831	chr17	16203371	16203530	+	0	NA	intron (NM_006311, intron 1 of 45)	L2a|LINE|L2	-8811	NM_001190438	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
89377	chr16	88794801	88795700	+	0	NA	Intergenic	AluSx|SINE|Alu	-8539	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
33252	chr10	114494251	114494550	+	0	NA	intron (NM_001322883, intron 6 of 20)	AluJb|SINE|Alu	32513	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
139877	chr2	230660501	230661100	+	0	NA	Intergenic	Intergenic	39729	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
170306	chr3	184339821	184340300	+	0	NA	intron (NM_001366133, intron 1 of 4)	AluSx1|SINE|Alu	1227	NM_001366133	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
209879	chr7	91173751	91173930	+	0	NA	intron (NM_012395, intron 13 of 13)	L1HS|LINE|L1	-90593	NM_003505	8321		NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
190735	chr6	341671	342430	+	0	NA	intron (NR_104474, intron 3 of 5)	intron (NR_104474, intron 3 of 5)	-49702	NR_046000	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
181579	chr5	43303371	43303530	+	0	NA	intron (NM_002130, intron 1 of 9)	MLT1A|LTR|ERVL-MaLR	9731	NM_001330663	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
26845	chr10	24816971	24817130	+	0	NA	Intergenic	MIRb|SINE|MIR	-93163	NM_001367447	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
88554	chr16	85518051	85518350	+	0	NA	Intergenic	Intergenic	-93209	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
72986	chr15	40595751	40596050	+	0	NA	intron (NM_144508, intron 1 of 25)	intron (NM_144508, intron 1 of 25)	1651	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
11670	chr1	91820851	91820950	+	0	NA	intron (NR_036634, intron 2 of 17)	L1ME3G|LINE|L1	65251	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
63781	chr14	21265301	21266340	+	0	NA	intron (NM_004500, intron 1 of 8)	intron (NM_004500, intron 1 of 8)	3622	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
91493	chr17	4905151	4905530	+	0	NA	Intergenic	AluJo|SINE|Alu	-2242	NM_000080	1145		NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1A1|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|FIM1|FIMG|FIMG1|MGI|SCCMS	cholinergic receptor nicotinic epsilon subunit	protein-coding
220200	chr8	96144451	96144900	+	0	NA	exon (NM_001001557, exon 2 of 2)	exon (NM_001001557, exon 2 of 2)	16131	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
226872	chr9	78118751	78119450	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-87289	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
127717	chr2	43424571	43425600	+	0	NA	intron (NR_144316, intron 28 of 36)	intron (NR_144316, intron 28 of 36)	170889	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
112056	chr19	5147501	5147700	+	0	NA	intron (NM_015015, intron 21 of 22)	AluJb|SINE|Alu	178487	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
92138	chr17	7627051	7628380	+	0	NA	promoter-TSS (NM_001289115)	promoter-TSS (NM_001289115)	106	NM_133491	112483		NM_133491	ENSG00000141504	SAT2	SSAT-2|SSAT2	spermidine/spermine N1-acetyltransferase family member 2	protein-coding
49505	chr12	25333751	25334280	+	0	NA	Intergenic	Intergenic	-83086	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
5767	chr1	26493721	26494180	+	0	NA	Intergenic	HAL1|LINE|L1	21510	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
62977	chr13	112297251	112297350	+	0	NA	Intergenic	Intergenic	-16167	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
88042	chr16	81440721	81441930	+	0	NA	Intergenic	Intergenic	-3845	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
44997	chr11	116986521	116987200	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	111568	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
122336	chr19	49158901	49159280	+	0	NA	intron (NM_001321285, intron 2 of 19)	AluY|SINE|Alu	1298	NM_001321283	54795		NM_017636	ENSG00000130529	TRPM4	EKVP6|LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
952	chr1	1748821	1749250	+	0	NA	Intergenic	Intergenic	-3036	NM_001199787	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
4441	chr1	21301571	21302250	+	0	NA	intron (NM_001113348, intron 1 of 18)	MIRb|SINE|MIR	8620	NR_038404	100506801		NR_038404	ENSG00000231105	ECE1-AS1	-	ECE1 antisense RNA 1	ncRNA
192865	chr6	27249671	27250230	+	0	NA	intron (NM_005865, intron 4 of 11)	intron (NM_005865, intron 4 of 11)	2249	NM_005865	10279		NM_005865	ENSG00000112812	PRSS16	TSSP	serine protease 16	protein-coding
33434	chr10	118987371	118987530	+	0	NA	Intergenic	L1M4c|LINE|L1	-42264	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
174589	chr4	40249501	40250680	+	0	NA	Intergenic	AluSx|SINE|Alu	53059	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
101915	chr17	74457221	74458550	+	0	NA	Intergenic	Intergenic	-8488	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
165949	chr3	107651801	107652030	+	0	NA	intron (NM_020235, intron 3 of 16)	MER107|DNA|hAT-Charlie	128953	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
194367	chr6	32973001	32973600	+	0	NA	intron (NM_001199456, intron 1 of 11).2	intron (NM_001199456, intron 1 of 11).2	216	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
86197	chr16	57993201	57994180	+	0	NA	TTS (NM_001384367)	TTS (NM_001384367)	-5913	NM_001330568	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
172214	chr4	1303951	1304380	+	0	NA	intron (NR_123716, intron 1 of 6)	MER33|DNA|hAT-Charlie	-5278	NM_001297432	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
235454	chrX	46544201	46544400	+	0	NA	intron (NM_001190417, intron 2 of 5)	intron (NM_001190417, intron 2 of 5)	1121	NM_001039891	641339		NM_001039891	ENSG00000251192	ZNF674	MRX92|ZNF673B	zinc finger protein 674	protein-coding
40129	chr11	62828671	62829000	+	0	NA	intron (NM_001244666, intron 2 of 10)	AluSc|SINE|Alu	3216	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
104132	chr17	80365821	80366080	+	0	NA	intron (NM_001256071, intron 42 of 67)	MLT1J-int|LTR|ERVL-MaLR	-49217	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
22877	chr1	225782171	225782330	+	0	NA	intron (NM_001130440, intron 1 of 3)	AluY|SINE|Alu	4424	NM_003133	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
192739	chr6	26381551	26381650	+	0	NA	Intergenic	Intergenic	-1508	NM_181531	10385		NM_006995	ENSG00000124508	BTN2A2	BT2.2|BTF2|BTN2.2	butyrophilin subfamily 2 member A2	protein-coding
47012	chr12	301371	301530	+	0	NA	intron (NM_001042603, intron 24 of 27)	L1PA7|LINE|L1	-38577	NM_001190997	6540		NM_016615	ENSG00000010379	SLC6A13	GAT-2|GAT2|GAT3	solute carrier family 6 member 13	protein-coding
174660	chr4	40924501	40924800	+	0	NA	intron (NM_173075, intron 9 of 16)	MLT1G1|LTR|ERVL-MaLR	-67458	NM_001166054	323		NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
162630	chr3	48788651	48789330	+	0	NA	intron (NM_001321989, intron 3 of 9)	intron (NM_001321989, intron 3 of 9)	58884	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
108985	chr18	79687221	79688430	+	0	NA	intron (NM_001202504, intron 1 of 12)	intron (NM_001202504, intron 1 of 12)	6395	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
214427	chr7	149861451	149861930	+	0	NA	exon (NM_001099220, exon 7 of 8)	exon (NM_001099220, exon 7 of 8)	-11274	NM_001367792	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
62624	chr13	100658171	100658580	+	0	NA	intron (NM_001286453, intron 2 of 15)	intron (NM_001286453, intron 2 of 15)	16420	NM_001350577	84899		NM_032813	ENSG00000125247	TMTC4	DFNB122	transmembrane O-mannosyltransferase targeting cadherins 4	protein-coding
118802	chr19	38455171	38455330	+	0	NA	exon (NM_001042723, exon 14 of 105)	exon (NM_001042723, exon 14 of 105)	21559	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
102854	chr17	76489701	76489980	+	0	NA	intron (NR_164786, intron 1 of 19)	MIRb|SINE|MIR	11583	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
11521	chr1	90972901	90973300	+	0	NA	intron (NM_201269, intron 2 of 5)	L1MB3|LINE|L1	48408	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
15529	chr1	150517371	150517800	+	0	NA	intron (NR_051960, intron 1 of 1)	MLT1A0|LTR|ERVL-MaLR	1828	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
85574	chr16	53474071	53474630	+	0	NA	intron (NM_001323609, intron 17 of 20)	AluSp|SINE|Alu	28859	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
151779	chr22	18090271	18090730	+	0	NA	3' UTR (NM_001127649, exon 5 of 5)	3' UTR (NM_001127649, exon 5 of 5)	12510	NM_001127649	55670		NM_017929	ENSG00000215193	PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
66945	chr14	65637421	65638180	+	0	NA	intron (NM_001371536, intron 7 of 11)	LTR77|LTR|ERV1	166698	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
190869	chr6	2157851	2158150	+	0	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	17991	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
93896	chr17	21244401	21244600	+	0	NA	intron (NM_152914, intron 1 of 2)	intron (NM_152914, intron 1 of 2)	8910	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
233103	chr9	137120851	137120950	+	0	NA	Intergenic	AluSg7|SINE|Alu	-6167	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
189212	chr5	171437951	171438650	+	0	NA	intron (NM_003862, intron 3 of 4)	AluSx1|SINE|Alu	18653	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
195796	chr6	41033121	41033380	+	0	NA	intron (NM_173561, intron 3 of 8)	intron (NM_173561, intron 3 of 8)	5971	NM_173561	222643		NM_173561	ENSG00000124602	UNC5CL	MUXA|ZUD	unc-5 family C-terminal like	protein-coding
132555	chr2	106248521	106248850	+	0	NA	Intergenic	Intergenic	-54384	NM_001377504	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
41279	chr11	65852221	65852550	+	0	NA	intron (NM_152760, intron 9 of 12)	intron (NM_152760, intron 9 of 12)	5795	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
45271	chr11	118009371	118009530	+	0	NA	Intergenic	Intergenic	23056	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
76553	chr15	75210021	75210530	+	0	NA	intron (NM_015492, intron 2 of 2)	intron (NM_015492, intron 2 of 2)	8393	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
35699	chr11	1922621	1923250	+	0	NA	intron (NM_001367851, intron 2 of 10)	intron (NM_001367851, intron 2 of 10)	104	NM_001367843	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
31691	chr10	97553501	97553850	+	0	NA	intron (NM_024954, intron 1 of 2)	intron (NM_024954, intron 1 of 2)	-18766	NM_001291218	26287		NM_020349	ENSG00000165887	ANKRD2	ARPP	ankyrin repeat domain 2	protein-coding
189983	chr5	177452421	177452980	+	0	NA	intron (NM_001174102, intron 1 of 2)	MIR|SINE|MIR	4375	NM_001174102	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
158677	chr3	5169351	5169450	+	0	NA	intron (NM_018184, intron 1 of 6)	L1MB3|LINE|L1	-18307	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
73732	chr15	45186251	45186750	+	0	NA	intron (NM_138356, intron 2 of 7)	intron (NM_138356, intron 2 of 7)	1466	NM_001301169	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
238828	chrX	154439151	154439680	+	0	NA	intron (NM_001493, intron 4 of 10)	AluSx3|SINE|Alu	2261	NM_001493	2664		NM_001493	ENSG00000203879	GDI1	1A|GDIL|MRX41|MRX48|OPHN2|RABGD1A|RABGDIA|XAP-4|XLID41	GDP dissociation inhibitor 1	protein-coding
124495	chr19	58570601	58571530	+	0	NA	exon (NM_001267033, exon 2 of 6)	exon (NM_001267033, exon 2 of 6)	2270	NM_001267033	7593		NM_003422	ENSG00000099326	MZF1	MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6	myeloid zinc finger 1	protein-coding
171261	chr3	195864601	195864800	+	0	NA	intron (NM_005781, intron 14 of 14)	intron (NM_005781, intron 14 of 14)	-4296	NR_134939	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
125093	chr2	9710051	9710150	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-79103	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
23892	chr1	234961701	234962320	+	0	NA	intron (NR_125945, intron 1 of 3)	intron (NR_125945, intron 1 of 3)	1989	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
52551	chr12	56142251	56142650	+	0	NA	intron (NM_015292, intron 25 of 30)	intron (NM_015292, intron 25 of 30)	-10137	NM_001199629	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
61426	chr13	51820401	51820930	+	0	NA	intron (NM_001351006, intron 2 of 2)	intron (NM_001351006, intron 2 of 2)	-16502	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
23923	chr1	235076171	235076330	+	0	NA	Intergenic	L2a|LINE|L2	-6432	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
194955	chr6	35295351	35295980	+	0	NA	3' UTR (NM_001292032, exon 13 of 13)	3' UTR (NM_001292032, exon 13 of 13)	-2153	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
218232	chr8	42048301	42048500	+	0	NA	exon (NM_006766, exon 2 of 17)	exon (NM_006766, exon 2 of 17)	-3350	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
198015	chr6	90110971	90111950	+	0	NA	intron (NM_021813, intron 4 of 8)	L2a|LINE|L2	185383	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
73474	chr15	43518251	43519200	+	0	NA	intron (NM_002373, intron 1 of 5)	intron (NM_002373, intron 1 of 5)	1117	NM_002373	4130		NM_002373	ENSG00000166963	MAP1A	MAP1L|MTAP1A	microtubule associated protein 1A	protein-coding
123156	chr19	52195351	52195650	+	0	NA	intron (NR_033500, intron 1 of 13)	MER21B|LTR|ERVL	5448	NM_014225	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
29834	chr10	72329551	72329650	+	0	NA	Intergenic	Intergenic	25319	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
219922	chr8	86356501	86356950	+	0	NA	intron (NM_007013, intron 1 of 24)	intron (NM_007013, intron 1 of 24)	14178	NM_007013	11059		NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
141448	chr2	241038121	241038580	+	0	NA	intron (NM_001080437, intron 6 of 31)	Charlie2b|DNA|hAT-Charlie	39732	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
224383	chr9	8431171	8431330	+	0	NA	intron (NM_130391, intron 21 of 31)	intron (NM_130391, intron 21 of 31)	302696	NM_130393	5789		NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|R-PTP-delta|RPTPDELTA	protein tyrosine phosphatase receptor type D	protein-coding
136145	chr2	174252821	174253480	+	0	NA	Intergenic	Intergenic	-4618	NM_013341	29789		NM_013341	ENSG00000138430	OLA1	DOC45|GBP45|GTBP9|GTPBP9|PTD004	Obg like ATPase 1	protein-coding
223650	chr8	144355321	144355830	+	0	NA	promoter-TSS (NM_001252404)	promoter-TSS (NM_001252404)	34	NM_001280561	340393		NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
91075	chr17	3039471	3040030	+	0	NA	Intergenic	MIRc|SINE|MIR	23857	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
148645	chr21	6090401	6090600	+	0	NA	intron (NR_152722, intron 1 of 4)	MLT1C|LTR|ERVL-MaLR	1165	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
133061	chr2	112277521	112278200	+	0	NA	intron (NM_198581, intron 1 of 11)	intron (NM_198581, intron 1 of 11)	2263	NM_198581	376940		NM_198581	ENSG00000188177	ZC3H6	ZC3HDC6	zinc finger CCCH-type containing 6	protein-coding
132632	chr2	108628021	108628280	+	0	NA	intron (NM_001371500, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	6899	NM_001371500	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
53767	chr12	68685101	68685500	+	0	NA	intron (NR_038930, intron 2 of 2)	AluSx1|SINE|Alu	1559	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
220814	chr8	102794251	102794550	+	0	NA	Intergenic	Intergenic	-12422	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
45751	chr11	119195201	119195900	+	0	NA	intron (NM_001145018, intron 1 of 6)	intron (NM_001145018, intron 1 of 6)	291	NM_001145018	283152		NM_001033658	ENSG00000248712	DRC12	CCDC153	dynein regulatory complex subunit 12 homolog	protein-coding
41759	chr11	66692121	66692580	+	0	NA	intron (NM_006946, intron 26 of 37)	AluJr|SINE|Alu	-14463	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
61648	chr13	73912671	73913230	+	0	NA	intron (NM_007249, intron 3 of 7)	L2b|LINE|L2	220979	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
149473	chr21	31784821	31785430	+	0	NA	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	-53007	NM_001145444	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
79794	chr16	1391851	1392150	+	0	NA	intron (NM_001372107, intron 8 of 14)	intron (NM_001372107, intron 8 of 14)	-12348	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
137755	chr2	197954201	197954650	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	149832	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
194605	chr6	33511971	33512650	+	0	NA	Intergenic	Intergenic	57734	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
24430	chr1	243542971	243543130	+	0	NA	intron (NM_005465, intron 12 of 13)	intron (NM_005465, intron 12 of 13)	196874	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
28261	chr10	45678351	45678650	+	0	NA	promoter-TSS (NR_160521)	promoter-TSS (NR_160521)	-16	NR_160521	653234		NR_160521		AGAP10P	AGAP10|CTGLF10P|CTGLF7|bA144G6.2|bA358L16.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 10, pseudogene	pseudo
181546	chr5	43104201	43104630	+	0	NA	Intergenic	Intergenic	-16499	NM_001330704	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
223900	chr9	335371	335730	+	0	NA	intron (NM_203447, intron 11 of 47)	intron (NM_203447, intron 11 of 47)	62502	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
191085	chr6	3743871	3744030	+	0	NA	intron (NM_183373, intron 1 of 4)	intron (NM_183373, intron 1 of 4)	7763	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
113687	chr19	10403151	10405100	+	0	NA	promoter-TSS (NR_031592)	promoter-TSS (NR_031592)	-583	NM_007065	11140		NM_007065	ENSG00000105401	CDC37	P50CDC37	cell division cycle 37, HSP90 cochaperone	protein-coding
180643	chr5	17216851	17216950	+	0	NA	promoter-TSS (NM_001271606)	promoter-TSS (NM_001271606)	77	NM_001271606	10409		NM_006317	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant membrane attached signal protein 1	protein-coding
98596	chr17	47743871	47744230	+	0	NA	intron (NM_013351, intron 3 of 5)	intron (NM_013351, intron 3 of 5)	10814	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
209846	chr7	90153921	90154700	+	0	NA	promoter-TSS (NM_012449)	promoter-TSS (NM_012449)	-159	NM_012449	26872		NM_012449	ENSG00000164647	STEAP1	PRSS24|STEAP	STEAP family member 1	protein-coding
37930	chr11	34243921	34244550	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	113775	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
211933	chr7	112464401	112465000	+	0	NA	intron (NR_120333, intron 7 of 11)	intron (NR_120333, intron 7 of 11)	12642	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
221731	chr8	127625151	127625450	+	0	NA	Intergenic	Intergenic	108667	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
217812	chr8	33681571	33681730	+	0	NA	Intergenic	Intergenic	-81544	NM_001305115	78986		NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding
116777	chr19	18506121	18506800	+	0	NA	intron (NM_006532, intron 1 of 11)	AluJr|SINE|Alu	15610	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
178109	chr4	140825951	140826050	+	0	NA	Intergenic	L1PA5|LINE|L1	-69615	NM_015130	23158		NM_015130	ENSG00000109436	TBC1D9	GRAMD9|MDR1	TBC1 domain family member 9	protein-coding
143469	chr20	31055821	31056300	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-201604	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
197539	chr6	79040251	79040430	+	0	NA	intron (NM_017934, intron 7 of 39)	intron (NM_017934, intron 7 of 39)	37914	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
207458	chr7	44604921	44605330	+	0	NA	Intergenic	L1MB4|LINE|L1	-1502	NM_002541	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
987	chr1	1830271	1830430	+	0	NA	intron (NM_001282539, intron 1 of 10)	AluYc3|SINE|Alu	-50319	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
113719	chr19	10458171	10458630	+	0	NA	intron (NM_001111307, intron 8 of 14)	LTR16A1|LTR|ERVL	5468	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
153799	chr22	29628951	29629250	+	0	NA	intron (NR_156186, intron 2 of 16)	intron (NR_156186, intron 2 of 16)	25467	NM_181829	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
13980	chr1	120588951	120589250	+	0	NA	intron (NR_144516, intron 5 of 43)	intron (NR_144516, intron 5 of 43)	30415	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
139908	chr2	230724601	230725050	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	11277	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
194861	chr6	34526751	34527550	+	0	NA	intron (NM_001199583, intron 2 of 9)	ORSL-2b|DNA|hAT-Tip100	12278	NM_001199583	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
119029	chr19	38928151	38929080	+	0	NA	intron (NM_001145901, intron 1 of 16).2	intron (NM_001145901, intron 1 of 16).2	2148	NM_017827	54938		NM_017827	ENSG00000104835	SARS2	SARS|SARSM|SERS|SYS|SerRS|SerRSmt|mtSerRS	seryl-tRNA synthetase 2, mitochondrial	protein-coding
87918	chr16	79261501	79261800	+	0	NA	Intergenic	Intergenic	339087	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
100473	chr17	61454251	61454930	+	0	NA	intron (NM_001321120, intron 1 of 8)	CpG	-1898	NM_018488	9496		NM_018488	ENSG00000121075	TBX4	ICPPS|PAPPAS|SPS	T-box transcription factor 4	protein-coding
82653	chr16	19383551	19383650	+	0	NA	Intergenic	MIRc|SINE|MIR	-26939	NM_001308161	79838		NM_024780	ENSG00000103534	TMC5	-	transmembrane channel like 5	protein-coding
180744	chr5	32002601	32002800	+	0	NA	intron (NM_178140, intron 5 of 24)	(AC)n|Simple_repeat|Simple_repeat	-66541	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
38366	chr11	44613471	44613830	+	0	NA	intron (NM_002231, intron 6 of 9)	AluSz|SINE|Alu	47987	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
170581	chr3	186829821	186831300	+	0	NA	Intergenic	Intergenic	-5039	NR_125409	102724699		NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA
235040	chrX	40089451	40089630	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	8418	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
96710	chr17	41567051	41567880	+	0	NA	exon (NM_000226, exon 7 of 8)	exon (NM_000226, exon 7 of 8)	4594	NM_000226	3857		NM_000226	ENSG00000171403	KRT9	CK-9|EPPK|EPPK1|K9	keratin 9	protein-coding
58331	chr12	131440521	131440900	+	0	NA	Intergenic	Intergenic	93240	NR_103736	338797		NM_001025466		LINC02370	-	long intergenic non-protein coding RNA 2370	ncRNA
139658	chr2	226835221	226836950	+	0	NA	promoter-TSS (NM_001349071)	promoter-TSS (NM_001349071)	31	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
236995	chrX	101626721	101627050	+	0	NA	3' UTR (NM_016607, exon 5 of 5)	3' UTR (NM_016607, exon 5 of 5)	3524	NM_177948	51566		NM_016607	ENSG00000102401	ARMCX3	ALEX3|GASP6|dJ545K15.2	armadillo repeat containing X-linked 3	protein-coding
29017	chr10	63628671	63628830	+	0	NA	Intergenic	Intergenic	-106860	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
40327	chr11	63913821	63914330	+	0	NA	exon (NM_001363648, exon 8 of 11)	exon (NM_001363648, exon 8 of 11)	3089	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
28592	chr10	52780251	52780350	+	0	NA	Intergenic	Intergenic	-7516	NM_001378373	4153		NM_000242	ENSG00000165471	MBL2	COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD	mannose binding lectin 2	protein-coding
86399	chr16	66728001	66729250	+	0	NA	intron (NM_006141, intron 9 of 12)	intron (NM_006141, intron 9 of 12)	22984	NM_006141	1783		NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding
8819	chr1	42951271	42951830	+	0	NA	intron (NM_006516, intron 1 of 9)	intron (NM_006516, intron 1 of 9)	7318	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
124982	chr2	9144071	9144230	+	0	NA	Intergenic	Intergenic	-62615	NM_001135191	8853		NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
119323	chr19	39915171	39915750	+	0	NA	exon (NM_003890, exon 5 of 29)	exon (NM_003890, exon 5 of 29)	19166	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
150544	chr21	43074501	43075700	+	0	NA	intron (NM_001178009, intron 1 of 17).2	CpG	419	NM_001354012	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
10916	chr1	83997421	83997900	+	0	NA	intron (NM_001350214, intron 1 of 21)	MIRc|SINE|MIR	1472	NM_001350214	79739		NM_024686	ENSG00000137941	TTLL7	-	tubulin tyrosine ligase like 7	protein-coding
228707	chr9	109015521	109015780	+	0	NA	3' UTR (NM_032012, exon 18 of 18)	3' UTR (NM_032012, exon 18 of 18)	-2151	NM_003798	8727		NM_003798	ENSG00000119326	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin alpha like 1	protein-coding
39492	chr11	61019001	61019700	+	0	NA	non-coding (NR_045638, exon 12 of 12)	non-coding (NR_045638, exon 12 of 12)	47670	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
33772	chr10	122879021	122880550	+	0	NA	promoter-TSS (NR_037915)	promoter-TSS (NR_037915)	-144	NM_001204364	196792		NM_152644	ENSG00000213185	FAM24B	-	family with sequence similarity 24 member B	protein-coding
124213	chr19	56839621	56839900	+	0	NA	intron (NR_161476, intron 1 of 3)	intron (NR_161476, intron 1 of 3)	966	NM_001369771	23619		NM_015363	ENSG00000269699	ZIM2	ZNF656	zinc finger imprinted 2	protein-coding
68523	chr14	88825671	88825830	+	0	NA	intron (NR_159362, intron 1 of 14)	intron (NR_159362, intron 1 of 14)	1099	NM_001366535	123016		NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
65506	chr14	51891321	51891850	+	0	NA	intron (NM_053064, intron 2 of 3)	L1ME3D|LINE|L1	26986	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
139371	chr2	221549271	221549430	+	0	NA	intron (NM_004438, intron 3 of 17)	intron (NM_004438, intron 3 of 17)	22954	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
119247	chr19	39492201	39492600	+	0	NA	3' UTR (NM_001001563, exon 11 of 11)	3' UTR (NM_001001563, exon 11 of 11)	-6547	NM_016941	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
183599	chr5	80198571	80199330	+	0	NA	intron (NM_001174072, intron 2 of 11)	intron (NM_001174072, intron 2 of 11)	57098	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
106641	chr18	22563151	22563480	+	0	NA	Intergenic	Intergenic	-145400	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
105220	chr17	82339921	82340400	+	0	NA	Intergenic	Intergenic	-6394	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
155424	chr22	38449201	38449730	+	0	NA	intron (NM_152868, intron 1 of 1)	intron (NM_152868, intron 1 of 1)	-5437	NM_004981	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
121052	chr19	45828821	45829080	+	0	NA	intron (NM_004819, intron 14 of 26)	intron (NM_004819, intron 14 of 26)	-13642	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
89179	chr16	88555801	88556000	+	0	NA	Intergenic	L2c|LINE|L2	6083	NR_146877	400555		NM_001001682		ZC3H18-AS1	C16orf85|LINC00859	ZC3H18 antisense RNA 1 (head to head)	ncRNA
111332	chr19	3634701	3634900	+	0	NA	intron (NM_012398, intron 16 of 17)	intron (NM_012398, intron 16 of 17)	-7985	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
19124	chr1	171512171	171512330	+	0	NA	intron (NM_015172, intron 2 of 33)	intron (NM_015172, intron 2 of 33)	26720	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
167885	chr3	136075201	136075460	+	0	NA	intron (NM_002718, intron 6 of 13)	Charlie25|DNA|hAT-Charlie	52588	NM_181897	5523		NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
128135	chr2	48343671	48344930	+	0	NA	intron (NM_001375445, intron 3 of 7)	intron (NM_001375445, intron 3 of 7)	29618	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
48948	chr12	12733101	12733700	+	0	NA	intron (NM_001130415, intron 1 of 1)	L1ME4a|LINE|L1	7483	NM_001130415	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
122517	chr19	49614251	49615030	+	0	NA	exon (NM_020719, exon 7 of 14)	exon (NM_020719, exon 7 of 14)	23458	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
151746	chr22	17787251	17787550	+	0	NA	TTS (NM_015241)	TTS (NM_015241)	10110	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
14016	chr1	120725651	120725930	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	1851	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
186471	chr5	138029371	138030180	+	0	NA	intron (NM_016603, intron 1 of 22)	intron (NM_016603, intron 1 of 22)	-2999	NR_037900	100130172		NR_037900		FAM13B-AS1	-	FAM13B antisense RNA 1	ncRNA
120830	chr19	45501321	45501980	+	0	NA	intron (NM_001080401, intron 4 of 4)	MLT1K|LTR|ERVL-MaLR	3177	NM_001080401	147699		NM_178494	ENSG00000213889	PPM1N	-	protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)	protein-coding
224089	chr9	4375401	4375700	+	0	NA	Intergenic	Intergenic	-75482	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
161235	chr3	39216171	39216730	+	0	NA	Intergenic	L2|LINE|L2	-23855	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
158858	chr3	9838751	9838850	+	0	NA	intron (NM_001351736, intron 7 of 7)	MIR3|SINE|MIR	5208	NM_001351736	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
104964	chr17	81966071	81966450	+	0	NA	Intergenic	Intergenic	-5073	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
83854	chr16	28879301	28880800	+	0	NA	promoter-TSS (NR_046287)	promoter-TSS (NR_046287)	7	NM_001286075	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
82334	chr16	15874871	15875100	+	0	NA	intron (NR_130757, intron 1 of 2)	MLT1F|LTR|ERVL-MaLR	13618	NM_144600	123811		NM_144600	ENSG00000133393	CEP20	C16orf63|FOPNL|FOR20|PHSECRG2	centrosomal protein 20	protein-coding
15401	chr1	150235601	150237130	+	0	NA	promoter-TSS (NM_001136478)	promoter-TSS (NM_001136478)	-253	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
164183	chr3	56801311	56803730	+	0	NA	promoter-TSS (NM_001377415)	promoter-TSS (NM_001377415)	-571	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
11409	chr1	89701851	89702400	+	0	NA	intron (NM_032270, intron 2 of 2)	L1MEi|LINE|L1	69005	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
15895	chr1	151543571	151543730	+	0	NA	intron (NM_001126337, intron 1 of 11)	intron (NM_001126337, intron 1 of 11)	-2146	NR_030280	693139		NR_030280	ENSG00000207606	MIR554	MIRN554|hsa-mir-554	microRNA 554	ncRNA
108492	chr18	72544371	72544550	+	0	NA	promoter-TSS (NM_182511)	promoter-TSS (NM_182511)	-118	NM_182511	147381		NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
122491	chr19	49566201	49566600	+	0	NA	intron (NM_001270960, intron 1 of 8)	AluJo|SINE|Alu	14156	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
221609	chr8	125592001	125592200	+	0	NA	Intergenic	L2b|LINE|L2	159891	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
59046	chr13	20546571	20546800	+	0	NA	Intergenic	Intergenic	-20472	NM_001353572	8100		NM_006531	ENSG00000032742	IFT88	D13S1056E|DAF19|TG737|TTC10|hTg737	intraflagellar transport 88	protein-coding
122760	chr19	50128371	50128850	+	0	NA	promoter-TSS (NR_024214).10	promoter-TSS (NR_024214).10	-88	NR_024228	100169958		NR_024228		SNAR-A8	-	small NF90 (ILF3) associated RNA A8	snRNA
234262	chrX	13167621	13168330	+	0	NA	Intergenic	Intergenic	-123355	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
69934	chr14	99596151	99596250	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	8007	NM_001144995	317762		NM_022747	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
43638	chr11	84721521	84721780	+	0	NA	promoter-TSS (NM_001351276)	promoter-TSS (NM_001351276)	-708	NM_001351276	1740		NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
134551	chr2	143903001	143903500	+	0	NA	Intergenic	Intergenic	-33817	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
15860	chr1	151438601	151438830	+	0	NA	intron (NM_207171, intron 1 of 16)	AluJb|SINE|Alu	3490	NM_207171	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
32797	chr10	108729851	108729950	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-660607	NR_125760	103695365		NR_125760	ENSG00000229981	LINC01435	TCONS_00018040	long intergenic non-protein coding RNA 1435	ncRNA
48771	chr12	11581221	11581480	+	0	NA	Intergenic	Intergenic	33320	NR_033890	338817		NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
172800	chr4	2959321	2960390	+	0	NA	intron (NM_001291978, intron 1 of 17)	intron (NM_001291978, intron 1 of 17)	3551	NM_001291978	8602		NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
219044	chr8	65755571	65755730	+	0	NA	intron (NM_001242318, intron 3 of 12)	L1M4|LINE|L1	33407	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
221959	chr8	129960401	129960630	+	0	NA	intron (NM_001353279, intron 2 of 13)	AluSx1|SINE|Alu	-20704	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
165976	chr3	108071251	108072150	+	0	NA	intron (NM_198793, intron 2 of 8)	intron (NM_198793, intron 2 of 8)	19331	NM_198793	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
48818	chr12	12111371	12111880	+	0	NA	promoter-TSS (NR_036262).2	promoter-TSS (NR_036262).2	-327	NR_036263	100422872		NR_036263	ENSG00000283429	MIR1244-3	-	microRNA 1244-3	ncRNA
76314	chr15	74382271	74382900	+	0	NA	intron (NR_146881, intron 2 of 3)	intron (NR_146881, intron 2 of 3)	3503	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
156756	chr22	41837551	41838180	+	0	NA	intron (NR_103834, intron 1 of 21)	AluSp|SINE|Alu	-3200	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
129435	chr2	69463501	69463700	+	0	NA	3' UTR (NM_014911, exon 22 of 22)	3' UTR (NM_014911, exon 22 of 22)	-24033	NM_001374284	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
68901	chr14	91348171	91348550	+	0	NA	intron (NM_001080414, intron 4 of 29)	AluJb|SINE|Alu	69460	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
140049	chr2	231363171	231363330	+	0	NA	TTS (NR_039937)	TTS (NR_039937)	542	NR_039937	100616317		NR_039937	ENSG00000263641	MIR4777	-	microRNA 4777	ncRNA
23429	chr1	228404121	228404700	+	0	NA	intron (NM_145214, intron 1 of 5)	intron (NM_145214, intron 1 of 5)	2425	NM_145214	81559		NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
190619	chr5	181186451	181187900	+	0	NA	Intergenic	AluJb|SINE|Alu	4733	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
34907	chr11	397171	397580	+	0	NA	exon (NM_001303029, exon 4 of 14)	exon (NM_001303029, exon 4 of 14)	3166	NM_007183	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
75147	chr15	64614721	64615180	+	0	NA	intron (NM_015042, intron 2 of 9)	AluSg|SINE|Alu	88331	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
187077	chr5	140174751	140176000	+	0	NA	intron (NM_032412, intron 1 of 2)	CpG	187	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
209942	chr7	92609901	92610350	+	0	NA	3' UTR (NM_001259, exon 8 of 8)	3' UTR (NM_001259, exon 8 of 8)	-19735	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
68372	chr14	77759121	77759550	+	0	NA	intron (NM_001318844, intron 1 of 12)	AluJb|SINE|Alu	-1433	NR_161324	283579		NM_174943	ENSG00000197734	C14orf178	-	chromosome 14 open reading frame 178	ncRNA
174810	chr4	48128771	48128930	+	0	NA	intron (NM_003328, intron 1 of 14)	AluY|SINE|Alu	5400	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
157146	chr22	42854051	42854550	+	0	NA	intron (NM_001142293, intron 1 of 14)	intron (NM_001142293, intron 1 of 14)	2973	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
39595	chr11	61298501	61299300	+	0	NA	TTS (NM_001923)	TTS (NM_001923)	-3584	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
94277	chr17	28709351	28709650	+	0	NA	intron (NM_001304949, intron 1 of 4)	AluY|SINE|Alu	604	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
27407	chr10	31352621	31353030	+	0	NA	intron (NM_001323675, intron 1 of 6)	MLT1G1|LTR|ERVL-MaLR	31165	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
79243	chr16	394121	394380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2479	NM_001286436	4833		NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
64189	chr14	23005901	23006100	+	0	NA	intron (NM_001130706, intron 1 of 7)	intron (NM_001130706, intron 1 of 7)	4143	NM_001130708	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
139244	chr2	219381321	219381600	+	0	NA	intron (NR_134970, intron 10 of 12)	intron (NR_134970, intron 10 of 12)	5902	NM_001319118	23549		NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
140192	chr2	231676201	231676750	+	0	NA	Intergenic	Intergenic	-32050	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
2872	chr1	11383751	11384280	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-95140	NM_020780	57540		NM_020780	ENSG00000204624	DISP3	PTCHD2	dispatched RND transporter family member 3	protein-coding
69047	chr14	91864821	91865400	+	0	NA	intron (NM_001128596, intron 1 of 11)	intron (NM_001128596, intron 1 of 11)	2426	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
48111	chr12	7819621	7820080	+	0	NA	intron (NM_153449, intron 9 of 11)	MER21A|LTR|ERVL	30448	NM_001297698	79923		NM_024865	ENSG00000111704	NANOG	-	Nanog homeobox	protein-coding
103730	chr17	78846221	78846680	+	0	NA	Intergenic	AluSz|SINE|Alu	-5011	NM_001385176	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
219826	chr8	81685751	81687050	+	0	NA	promoter-TSS (NM_005536)	promoter-TSS (NM_005536)	-46	NM_001144879	3612		NM_005536	ENSG00000133731	IMPA1	IMP|IMPA|MRT59	inositol monophosphatase 1	protein-coding
104250	chr17	80742921	80743650	+	0	NA	intron (NM_020761, intron 5 of 33)	intron (NM_020761, intron 5 of 33)	62347	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
238751	chrX	154339171	154339330	+	0	NA	Intergenic	AluJb|SINE|Alu	34080	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
10846	chr1	77958471	77959030	+	0	NA	intron (NR_146539, intron 16 of 22)	intron (NR_146539, intron 16 of 22)	20322	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
39560	chr11	61126601	61127430	+	0	NA	3' UTR (NM_014207, exon 11 of 11)	3' UTR (NM_014207, exon 11 of 11)	24526	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
154454	chr22	35401371	35401830	+	0	NA	intron (NM_006739, intron 2 of 16)	intron (NM_006739, intron 2 of 16)	1460	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
160710	chr3	32403901	32404100	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	12147	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
208278	chr7	65872501	65874700	+	0	NA	intron (NM_001284342, intron 1 of 1)	CpG	526	NM_001284342	154807		NM_173517	ENSG00000196715	VKORC1L1	-	vitamin K epoxide reductase complex subunit 1 like 1	protein-coding
15200	chr1	149244751	149244850	+	0	NA	Intergenic	L2a|LINE|L2	-43654	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
226949	chr9	79671601	79671800	+	0	NA	intron (NR_104239, intron 9 of 20)	intron (NR_104239, intron 9 of 20)	98523	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
114062	chr19	11085951	11086050	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3463	NM_001195799	3949		NM_000527	ENSG00000130164	LDLR	FH|FHC|FHCL1|LDLCQ2	low density lipoprotein receptor	protein-coding
239047	chrY	7263821	7264300	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-9912	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
101901	chr17	74383351	74383450	+	0	NA	Intergenic	Intergenic	15894	NM_001331077	350383		NM_181790	ENSG00000257008	GPR142	GPRg1b|PGR2	G protein-coupled receptor 142	protein-coding
109049	chr18	79797571	79798200	+	0	NA	Intergenic	CpG	-65783	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
33112	chr10	111077821	111078080	+	0	NA	5' UTR (NM_000681, exon 1 of 1)	5' UTR (NM_000681, exon 1 of 1)	921	NM_000681	150		NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|FPLD8|ZNF32	adrenoceptor alpha 2A	protein-coding
21618	chr1	206574871	206576030	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	18286	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
99365	chr17	49908671	49909430	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-60140	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
170233	chr3	184187951	184188330	+	0	NA	intron (NM_001351298, intron 6 of 20)	intron (NM_001351298, intron 6 of 20)	2065	NM_001351299	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
126199	chr2	26781351	26781650	+	0	NA	TTS (NM_017877)	TTS (NM_017877)	-4515	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
167331	chr3	128743801	128744000	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSx1|SINE|Alu	17717	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
30007	chr10	73769971	73770130	+	0	NA	intron (NM_198597, intron 20 of 22)	intron (NM_198597, intron 20 of 22)	-2226	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
124507	chr19	58607201	58607400	+	0	NA	Intergenic	TAR1|Satellite|telo	31901	NR_026052	65996		NM_023939	ENSG00000293115	CENPBD2P	CENPBD1P1	CENPB DNA-binding domains containing 2, pseudogene	pseudo
45063	chr11	117058171	117058330	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSg|SINE|Alu	40178	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
167004	chr3	125972051	125973050	+	0	NA	intron (NM_001308313, intron 3 of 6)	intron (NM_001308313, intron 3 of 6)	3372	NM_001308313	152015		NM_001012337	ENSG00000114547	ROPN1B	-	rhophilin associated tail protein 1B	protein-coding
14228	chr1	143217671	143218400	+	0	NA	Intergenic	Intergenic	204557	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
182179	chr5	56698621	56699280	+	0	NA	Intergenic	Intergenic	73921	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
130441	chr2	85416801	85417300	+	0	NA	Intergenic	Intergenic	-1881	NM_201594								
55507	chr12	104999151	104999250	+	0	NA	3' UTR (NM_152318, exon 4 of 4)	3' UTR (NM_152318, exon 4 of 4)	12884	NM_152318	121053		NM_152318	ENSG00000151131	NOPCHAP1	C12orf45|DDSR1	NOP protein chaperone 1	protein-coding
217916	chr8	37924501	37924850	+	0	NA	Intergenic	L1M4|LINE|L1	15449	NM_152413	137362		NM_152413	ENSG00000169154	GOT1L1	-	glutamic-oxaloacetic transaminase 1 like 1	protein-coding
101651	chr17	68258571	68260200	+	0	NA	5' UTR (NM_001352904, exon 1 of 13)	5' UTR (NM_001352904, exon 1 of 13)	203	NM_001352904	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
89719	chr16	89415171	89415330	+	0	NA	intron (NR_045839, intron 2 of 9)	AluJo|SINE|Alu	-15668	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109192	chr19	384771	384950	+	0	NA	Intergenic	Intergenic	-8834	NM_016585	51298		NM_016585	ENSG00000105549	SPMAP2	CT56|THEG|THEG1	sperm microtubule associated protein 2	protein-coding
126042	chr2	25374051	25374430	+	0	NA	Intergenic	Intergenic	-31650	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
99390	chr17	49987671	49988300	+	0	NA	Intergenic	Intergenic	7239	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
160567	chr3	30693001	30693950	+	0	NA	3' UTR (NM_003242, exon 7 of 7)	3' UTR (NM_003242, exon 7 of 7)	86874	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
115573	chr19	15834921	15835180	+	0	NA	non-coding (NR_015379, exon 3 of 3)	non-coding (NR_015379, exon 3 of 3)	6103	NR_015379	652995		NR_015379	ENSG00000214049	UCA1	CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36	urothelial cancer associated 1	ncRNA
47343	chr12	1841801	1842000	+	0	NA	intron (NM_172364, intron 25 of 37)	intron (NM_172364, intron 25 of 37)	21335	NM_001039029	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
214969	chr7	151992321	151992650	+	0	NA	intron (NR_033169, intron 6 of 9)	MLT1C|LTR|ERVL-MaLR	-33189	NM_001371458	63917		NM_022087	ENSG00000178234	GALNT11	GALNAC-T11|GALNACT11	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding
19625	chr1	180100601	180101000	+	0	NA	intron (NM_014810, intron 37 of 37)	THE1A|LTR|ERVL-MaLR	-54033	NM_001004128	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
163853	chr3	52486121	52486450	+	0	NA	intron (NM_007184, intron 15 of 20)	AluSx3|SINE|Alu	-9053	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
190787	chr6	684951	685630	+	0	NA	intron (NR_073064, intron 2 of 29)	intron (NR_073064, intron 2 of 29)	7849	NM_018303	55770		NM_018303	ENSG00000112685	EXOC2	NEDFACH|SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
9033	chr1	44780821	44781580	+	0	NA	Intergenic	AluJr|SINE|Alu	2810	NR_001457	94163		NR_001457	ENSG00000281859	SNORD38B	RNU38B|U38B	small nucleolar RNA, C/D box 38B	snoRNA
135521	chr2	162072371	162072750	+	0	NA	intron (NR_166824, intron 2 of 25)	intron (NR_166824, intron 2 of 25)	1655	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
122203	chr19	48958201	48958830	+	0	NA	intron (NM_001291428, intron 4 of 5)	intron (NM_001291428, intron 4 of 5)	3640	NM_138761	581		NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
109227	chr19	493051	493150	+	0	NA	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	-1476	NM_001385598	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
34336	chr10	132180471	132180630	+	0	NA	intron (NM_001105521, intron 24 of 24)	(TG)n|Simple_repeat|Simple_repeat	-6398	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
239229	chrY	12943501	12944430	+	0	NA	Intergenic	L1MDa|LINE|L1	38260	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
101378	chr17	67291221	67291500	+	0	NA	Intergenic	AluYe5|SINE|Alu	-46164	NM_001330447	9931		NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
88313	chr16	84193471	84193830	+	0	NA	non-coding (NR_147175, exon 5 of 5)	non-coding (NR_147175, exon 5 of 5)	2493	NM_139174	161931		NM_139174	ENSG00000140955	ADAD2	TENRL	adenosine deaminase domain containing 2	protein-coding
238939	chrX	154803371	154803730	+	0	NA	intron (NM_001166462, intron 1 of 12)	intron (NM_001166462, intron 1 of 12)	1935	NM_002436	4354		NM_002436	ENSG00000130830	MPP1	AAG12|DXS552E|EMP55|MRG1|PEMP	MAGUK p55 scaffold protein 1	protein-coding
108937	chr18	79483021	79483680	+	0	NA	intron (NM_001278670, intron 8 of 8)	intron (NM_001278670, intron 8 of 8)	83051	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
133684	chr2	127087121	127088400	+	0	NA	intron (NM_139345, intron 1 of 15)	intron (NM_139345, intron 1 of 15)	-3210	NM_001320642	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
59304	chr13	24274251	24275380	+	0	NA	intron (NM_001286795, intron 1 of 9)	intron (NM_001286795, intron 1 of 9)	4065	NM_001286793	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
227131	chr9	86260301	86260900	+	0	NA	promoter-TSS (NM_001276366)	promoter-TSS (NM_001276366)	-943	NM_001276367	389766		NM_001010907	ENSG00000187753	C9orf153	bA507D14.1	chromosome 9 open reading frame 153	protein-coding
152226	chr22	20148171	20148330	+	0	NA	TTS (NM_013373)	TTS (NM_013373)	2805	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
195925	chr6	41786051	41786900	+	0	NA	intron (NM_013397, intron 7 of 7)	CpG	-1219	NM_001134493	100188893		NM_001134493	ENSG00000214736	TOMM6	OBTP|TOM6	translocase of outer mitochondrial membrane 6	protein-coding
180175	chr5	1469271	1469430	+	0	NA	intron (NM_024830, intron 12 of 13)	intron (NM_024830, intron 12 of 13)	-23910	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
126924	chr2	32916271	32916600	+	0	NA	intron (NR_027099, intron 10 of 10)	(G)n|Simple_repeat|Simple_repeat	-10692	NR_027097	100271832		NR_027097	ENSG00000236854	LOC100271832	-	uncharacterized LOC100271832	ncRNA
54361	chr12	89705901	89706300	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	2738	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
109343	chr19	612971	613150	+	0	NA	intron (NM_001194, intron 5 of 7)	CpG	20477	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
136673	chr2	180990401	180990600	+	0	NA	intron (NM_001278554, intron 3 of 5)	intron (NM_001278554, intron 3 of 5)	9376	NM_001278554	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
124886	chr2	8357421	8357880	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-29231	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
96170	chr17	39709351	39710450	+	0	NA	intron (NM_001382802, intron 5 of 24)	intron (NM_001382802, intron 5 of 24)	9836	NM_004448	2064		NM_004448	ENSG00000141736	ERBB2	CD340|HER-2|HER-2/neu|HER2|MLN 19|MLN-19|NEU|NGL|TKR1|VSCN2|c-ERB-2|c-ERB2|p185(erbB2)	erb-b2 receptor tyrosine kinase 2	protein-coding
148173	chr20	63535261	63535880	+	0	NA	intron (NM_005975, intron 1 of 7)	intron (NM_005975, intron 1 of 7)	1800	NM_001256358	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
95991	chr17	39195451	39196070	+	0	NA	intron (NM_199247, intron 1 of 12)	intron (NM_199247, intron 1 of 12)	1909	NM_199248	782		NM_000723	ENSG00000067191	CACNB1	CAB1|CACNLB1|CCHLB1	calcium voltage-gated channel auxiliary subunit beta 1	protein-coding
91999	chr17	7444551	7445180	+	0	NA	promoter-TSS (NM_000747)	promoter-TSS (NM_000747)	-196	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
41601	chr11	66373451	66373550	+	0	NA	Intergenic	L2c|LINE|L2	-1024	NM_001300868	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
45609	chr11	118904401	118904800	+	0	NA	intron (NM_001378214, intron 4 of 8)	intron (NM_001378214, intron 4 of 8)	5942	NM_182557	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
25786	chr10	11165801	11166850	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	1295	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
203613	chr7	947271	947430	+	0	NA	intron (NM_001284308, intron 1 of 10)	AluJb|SINE|Alu	-1534	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
226588	chr9	73113751	73114400	+	0	NA	Intergenic	Intergenic	-37790	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
1367	chr1	2509971	2510700	+	0	NA	intron (NM_018216, intron 16 of 18).2	intron (NM_018216, intron 16 of 18).2	16261	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
115240	chr19	14516201	14516500	+	0	NA	intron (NM_001300914, intron 2 of 2)	intron (NM_001300914, intron 2 of 2)	1512	NM_001300914	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
116621	chr19	18289601	18289790	+	0	NA	Intergenic	AluSz6|SINE|Alu	7618	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
142045	chr20	1731371	1732130	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-9458	NR_164369	105369219		NR_164369		SIRPB3P	-	signal regulatory protein beta 3, pseudogene	pseudo
140227	chr2	231726251	231726550	+	0	NA	Intergenic	Intergenic	13086	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
113552	chr19	10235921	10237400	+	0	NA	Intergenic	Intergenic	-5329	NM_004230	9294		NM_004230	ENSG00000267534	S1PR2	AGR16|DFNB68|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding
56963	chr12	120531851	120532250	+	0	NA	Intergenic	Intergenic	-2306	NM_014868	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
85735	chr16	56669321	56670130	+	0	NA	promoter-TSS (NM_005951)	promoter-TSS (NM_005951)	-89	NM_005951	4496		NM_005951	ENSG00000205358	MT1H	MT-0|MT-1H|MT-IH|MT1	metallothionein 1H	protein-coding
24231	chr1	236149721	236149980	+	0	NA	intron (NM_003272, intron 1 of 6)	(GTGTGT)n|Simple_repeat|Simple_repeat	7311	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
191804	chr6	14449371	14449750	+	0	NA	Intergenic	MamRep1879|DNA|hAT-Tip100?	-164106	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
28460	chr10	49253401	49253830	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	45278	NR_108038	100506769		NR_108038		C10orf71-AS1	-	C10orf71 antisense RNA 1	ncRNA
134476	chr2	143253351	143253450	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	123981	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
131155	chr2	91522021	91522630	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	137624	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
146458	chr20	49700851	49701850	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	12528	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
28108	chr10	43395521	43397600	+	0	NA	5' UTR (NM_004966, exon 2 of 4)	5' UTR (NM_004966, exon 2 of 4)	271	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
87141	chr16	69150221	69150780	+	0	NA	intron (NM_032830, intron 6 of 16)	intron (NM_032830, intron 6 of 16)	17851	NM_032830	84916		NM_032830	ENSG00000141076	UTP4	CIRH1A|CIRHIN|NAIC|TEX292	UTP4 small subunit processome component	protein-coding
177607	chr4	121070651	121071510	+	0	NA	intron (NM_024574, intron 1 of 3)	CpG	1455	NM_024574	79625		NM_024574	ENSG00000173376	NDNF	C4orf31|HH25|NORD	neuron derived neurotrophic factor	protein-coding
213261	chr7	134606251	134606750	+	0	NA	Intergenic	Intergenic	-40279	NM_001293085	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
192615	chr6	26056101	26057000	+	0	NA	promoter-TSS (NM_005319)	promoter-TSS (NM_005319)	-80	NM_005319	3006		NM_005319	ENSG00000187837	H1-2	H1.2|H1C|H1F2|H1s-1|HIST1H1C	H1.2 linker histone, cluster member	protein-coding
133783	chr2	127702001	127703130	+	0	NA	3' UTR (NM_018383, exon 22 of 22)	3' UTR (NM_018383, exon 22 of 22)	1068	NM_032740	84826		NM_032740	ENSG00000173349	SFT2D3	-	SFT2 domain containing 3	protein-coding
53484	chr12	66188871	66189530	+	0	NA	promoter-TSS (NM_007199)	promoter-TSS (NM_007199)	-14	NM_007199	11213		NM_007199	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin 1 receptor associated kinase 3	protein-coding
165872	chr3	106073601	106074200	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-204499	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
140343	chr2	232607501	232607730	+	0	NA	intron (NM_001243252, intron 1 of 3)	AluJr|SINE|Alu	1558	NM_001243252	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
138032	chr2	201288071	201288600	+	0	NA	TTS (NR_110620)	TTS (NR_110620)	27799	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
188345	chr5	151523371	151523700	+	0	NA	intron (NM_001447, intron 18 of 23)	MIRb|SINE|MIR	-1387	NR_106752	102465246		NR_106752	ENSG00000276622	MIR6499	hsa-mir-6499|mir-6499	microRNA 6499	ncRNA
192488	chr6	24955071	24955400	+	0	NA	intron (NM_001286446, intron 1 of 13)	L1ME4a|LINE|L1	-19275	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
28801	chr10	62183271	62184780	+	0	NA	Intergenic	Intergenic	84819	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
28495	chr10	50067371	50068850	+	0	NA	promoter-TSS (NR_038275)	promoter-TSS (NR_038275)	156	NM_001005751	387680		NM_018232	ENSG00000099290	WASHC2A	FAM21A|FAM21B|bA56A21.1|bA98I6.1	WASH complex subunit 2A	protein-coding
87848	chr16	75658371	75658750	+	0	NA	Intergenic	Intergenic	10787	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
95782	chr17	38702101	38703220	+	0	NA	promoter-TSS (NR_039887)	promoter-TSS (NR_039887)	-329	NR_039887	100616203		NR_039887	ENSG00000275238	MIR4734	mir-4734	microRNA 4734	ncRNA
209024	chr7	74451071	74451430	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2656	NM_001199207	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
186556	chr5	138463421	138464400	+	0	NA	Intergenic	Intergenic	-1569	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
188870	chr5	159341801	159342430	+	0	NA	intron (NR_037889, intron 2 of 4)	intron (NR_037889, intron 2 of 4)	10597	NR_037889	285626		NR_037889	ENSG00000249738	LOC285626	-	uncharacterized LOC285626	ncRNA
63766	chr14	21249201	21250450	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	19617	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
67564	chr14	71356051	71356150	+	0	NA	intron (NM_001354287, intron 2 of 23)	intron (NM_001354287, intron 2 of 23)	35624	NM_015556	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
72961	chr15	40474901	40475100	+	0	NA	Intergenic	MIR|SINE|MIR	4016	NM_130468	113189		NM_130468	ENSG00000169105	CHST14	ATCS|D4ST1|EDSMC1|HNK1ST	carbohydrate sulfotransferase 14	protein-coding
19272	chr1	172717771	172717930	+	0	NA	Intergenic	Intergenic	58747	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
197300	chr6	71886571	71886950	+	0	NA	promoter-TSS (NM_014989)	promoter-TSS (NM_014989)	57	NM_001350411	22999		NM_014989	ENSG00000079841	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
177957	chr4	139017551	139018330	+	0	NA	intron (NM_012118, intron 1 of 2)	FLAM_A|SINE|Alu	2159	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
203714	chr7	1059301	1060350	+	0	NA	TTS (NM_001303474)	TTS (NM_001303474)	4455	NM_001303474	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
179409	chr4	184208651	184208830	+	0	NA	intron (NM_153343, intron 1 of 7)	L1PA3|LINE|L1	9133	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
136774	chr2	181459101	181459930	+	0	NA	intron (NM_000885, intron 2 of 27)	intron (NM_000885, intron 2 of 27)	2129	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
65352	chr14	50362251	50363300	+	0	NA	intron (NM_001282236, intron 2 of 8)	LTR12C|LTR|ERV1	34106	NM_001367065	8814		NM_004196	ENSG00000100490	CDKL1	KKIALRE|P42	cyclin dependent kinase like 1	protein-coding
81067	chr16	4333201	4334100	+	0	NA	intron (NM_001318918, intron 4 of 7).2	MLT1C|LTR|ERVL-MaLR	-5310	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
51427	chr12	52021771	52022080	+	0	NA	promoter-TSS (NM_001202233)	promoter-TSS (NM_001202233)	-907	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
173933	chr4	25638051	25638550	+	0	NA	Intergenic	Intergenic	-17551	NM_001177998	10568		NM_006424	ENSG00000157765	SLC34A2	NAPI-3B|NAPI-IIb|NPTIIb|NaPi2b|PULAM	solute carrier family 34 member 2	protein-coding
66815	chr14	64746371	64746750	+	0	NA	3' UTR (NM_001024858, exon 35 of 35)	3' UTR (NM_001024858, exon 35 of 35)	39126	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
191037	chr6	3176671	3177300	+	0	NA	Intergenic	Intergenic	18782	NR_038296	100507194		NR_038295	ENSG00000230269	LINC02525	TP53LC14|lncNB1	long intergenic non-protein coding RNA 2525	ncRNA
125480	chr2	12443851	12444000	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	244795	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
18700	chr1	167436471	167437430	+	0	NA	intron (NM_198053, intron 4 of 7)	L1MA7|LINE|L1	81579	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
158721	chr3	8492801	8493000	+	0	NA	intron (NR_033378, intron 3 of 3)	intron (NR_033378, intron 3 of 3)	8758	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
212859	chr7	130853051	130853550	+	0	NA	Intergenic	Intergenic	23510	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
2522	chr1	9709551	9710680	+	0	NA	intron (NM_001350234, intron 2 of 23)	intron (NM_001350234, intron 2 of 23)	18648	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
234424	chrX	16823901	16824300	+	0	NA	intron (NM_018360, intron 3 of 9)	AluJr|SINE|Alu	37634	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
113635	chr19	10330271	10330830	+	0	NA	intron (NM_133452, intron 1 of 12)	intron (NM_133452, intron 1 of 12)	2979	NM_133452	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
11903	chr1	93344221	93344480	+	0	NA	intron (NR_034089, intron 1 of 8)	intron (NR_034089, intron 1 of 8)	1461	NR_034089	100131564		NR_034089		CCDC18-AS1	-	CCDC18 antisense RNA 1	ncRNA
182146	chr5	56326201	56326400	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-92970	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
45470	chr11	118571301	118572900	+	0	NA	promoter-TSS (NM_001655)	promoter-TSS (NM_001655)	-287	NM_001142281	372		NM_001655	ENSG00000095139	ARCN1	COPD|SRMMD|SSMG	archain 1	protein-coding
236726	chrX	78107251	78107580	+	0	NA	intron (NM_000291, intron 1 of 10)	L1MD2|LINE|L1	3167	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
167468	chr3	129114421	129114680	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	7254	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
152077	chr22	19754021	19754480	+	0	NA	Intergenic	Intergenic	-2453	NM_005992	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
99020	chr17	48836671	48836830	+	0	NA	intron (NM_001261395, intron 1 of 11)	intron (NM_001261395, intron 1 of 11)	5715	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
26727	chr10	22678471	22678630	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	35558	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
148720	chr21	6831701	6832000	+	0	NA	Intergenic	CpG	-26600	NR_146656	110091777		NR_146655		LOC110091777	-	uncharacterized LOC110091777	ncRNA
215457	chr7	157930451	157930550	+	0	NA	intron (NM_130842, intron 10 of 21)	intron (NM_130842, intron 10 of 21)	75915	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
19752	chr1	181424821	181425680	+	0	NA	Intergenic	Intergenic	-58267	NM_001205293	777		NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|DEE69|EIEE69|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
77603	chr15	85312371	85312930	+	0	NA	Intergenic	L1MCc|LINE|L1	-67946	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
109076	chr18	79921171	79921330	+	0	NA	intron (NM_001146345, intron 3 of 4)	intron (NM_001146345, intron 3 of 4)	30403	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
12935	chr1	110674001	110675350	+	0	NA	exon (NM_002232, exon 1 of 1)	exon (NM_002232, exon 1 of 1)	265	NM_002232	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
202470	chr6	158230271	158230430	+	0	NA	Intergenic	Intergenic	62000	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
226976	chr9	81709671	81709830	+	0	NA	intron (NR_109772, intron 1 of 3)	SVA_F|Retroposon|SVA	20037	NR_109772	101927502		NR_109772	ENSG00000233926	TLE1-DT	-	TLE1 divergent transcript	ncRNA
12457	chr1	107821251	107821830	+	0	NA	intron (NM_006113, intron 2 of 26)	L2a|LINE|L2	-75683	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
183708	chr5	80981401	80981600	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-20593	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
185032	chr5	115604601	115605130	+	0	NA	intron (NR_109875, intron 2 of 2)	ERVL-E-int|LTR|ERVL	-2386	NM_021649	353376		NM_021649	ENSG00000243414	TICAM2	MyD88-4|TICAM-2|TIRAP3|TIRP|TRAM	TIR domain containing adaptor molecule 2	protein-coding
155262	chr22	37998751	37999050	+	0	NA	intron (NM_001301130, intron 5 of 5)	intron (NM_001301130, intron 5 of 5)	10106	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
25053	chr10	3779901	3780700	+	0	NA	intron (NR_027653, intron 2 of 3)	intron (NR_027653, intron 2 of 3)	4909	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
135870	chr2	170967901	170968480	+	0	NA	Intergenic	Intergenic	38937	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
174204	chr4	37585271	37585450	+	0	NA	intron (NM_018302, intron 1 of 2)	intron (NM_018302, intron 1 of 2)	1127	NM_018302	55286		NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
168030	chr3	136899701	136900300	+	0	NA	intron (NM_001291999, intron 1 of 3)	intron (NM_001291999, intron 1 of 3)	-30502	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
135345	chr2	160395321	160395950	+	0	NA	intron (NM_016836, intron 1 of 13)	AluY|SINE|Alu	12247	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
177365	chr4	110514971	110515350	+	0	NA	intron (NR_166844, intron 6 of 19)	intron (NR_166844, intron 6 of 19)	39005	NM_001379613	2028		NM_001977	ENSG00000138792	ENPEP	APA|CD249|gp160	glutamyl aminopeptidase	protein-coding
157179	chr22	43016551	43017330	+	0	NA	Intergenic	AluY|SINE|Alu	-1764	NM_001349969	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
23501	chr1	228736101	228736930	+	0	NA	intron (NM_021205, intron 1 of 2)	CpG	1036	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
62125	chr13	95661001	95661240	+	0	NA	Intergenic	Intergenic	15805	NR_132117	100289274		NR_132117	ENSG00000247400	DNAJC3-DT	DNAJC3-AS1	DNAJC3 divergent transcript	ncRNA
39829	chr11	62104971	62105630	+	0	NA	Intergenic	MER41B|LTR|ERV1	-18711	NM_020238	3619		NM_020238	ENSG00000149503	INCENP	-	inner centromere protein	protein-coding
199518	chr6	118711401	118711800	+	0	NA	Intergenic	L1M5|LINE|L1	-1525	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
103398	chr17	78171651	78171950	+	0	NA	exon (NM_001363778, exon 3 of 3)	exon (NM_001363778, exon 3 of 3)	3219	NM_004710	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
140076	chr2	231441901	231442100	+	0	NA	Intergenic	AluSz|SINE|Alu	13936	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
210961	chr7	101507521	101507980	+	0	NA	intron (NM_133457, intron 3 of 12)	intron (NM_133457, intron 3 of 12)	61256	NR_103749	100506527		NR_103747	ENSG00000233123	LINC01007	-	long intergenic non-protein coding RNA 1007	ncRNA
207981	chr7	55414901	55415530	+	0	NA	intron (NM_018697, intron 6 of 8)	intron (NM_018697, intron 6 of 8)	49878	NM_018697	55915		NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like glutathione S-transferase 2	protein-coding
43518	chr11	81869321	81870780	+	0	NA	Intergenic	LTR43B|LTR|ERV1	20786	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
52976	chr12	57481371	57481850	+	0	NA	intron (NM_001319850, intron 2 of 20)	L2b|LINE|L2	-1744	NM_032496	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
118906	chr19	38719901	38720200	+	0	NA	intron (NM_004924, intron 11 of 20)	intron (NM_004924, intron 11 of 20)	24424	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
42707	chr11	72672351	72672650	+	0	NA	intron (NM_002599, intron 1 of 30)	L2|LINE|L2	1922	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
143927	chr20	32735601	32736350	+	0	NA	intron (NM_053041, intron 1 of 8)	intron (NM_053041, intron 1 of 8)	7492	NM_001099339	149951		NM_053041	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
130712	chr2	86730101	86730730	+	0	NA	intron (NM_022780, intron 1 of 8)	AluSz|SINE|Alu	-9293	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
57980	chr12	124007851	124008350	+	0	NA	intron (NM_001204298, intron 3 of 4)	L1MC5a|LINE|L1	34885	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
28286	chr10	46031651	46031750	+	0	NA	promoter-TSS (NM_001145260)	promoter-TSS (NM_001145260)	-986	NM_001145261	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
198280	chr6	99614571	99615080	+	0	NA	3' UTR (NM_021620, exon 4 of 4)	3' UTR (NM_021620, exon 4 of 4)	7992	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
128187	chr2	53861821	53862080	+	0	NA	Intergenic	L1ME4c|LINE|L1	-1917	NM_001164165	100302652		NM_001164165	ENSG00000115239	GPR75-ASB3	ASB-3|ASB3	GPR75-ASB3 readthrough	protein-coding
167837	chr3	133881321	133881580	+	0	NA	intron (NM_016577, intron 1 of 7)	intron (NM_016577, intron 1 of 7)	14397	NM_001363953	51560		NM_016577	ENSG00000154917	RAB6B	-	RAB6B, member RAS oncogene family	protein-coding
218150	chr8	41834471	41835150	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	-37188	NM_020477	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
220664	chr8	101135321	101136050	+	0	NA	Intergenic	AluSx3|SINE|Alu	34554	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
159259	chr3	12943121	12943580	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	24380	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
1198	chr1	2248871	2249730	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	20981	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
118656	chr19	37315671	37316150	+	0	NA	intron (NR_138103, intron 1 of 8)	PABL_B|LTR|ERV1	-1972	NR_138104	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
114178	chr19	11383111	11384830	+	0	NA	intron (NM_000121, intron 1 of 7)	intron (NM_000121, intron 1 of 7)	344	NM_000121	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
187226	chr5	141135171	141135330	+	0	NA	promoter-TSS (NM_015669)	promoter-TSS (NM_015669)	44	NM_015669	26167		NM_015669	ENSG00000113209	PCDHB5	PCDH-BETA5	protocadherin beta 5	protein-coding
134449	chr2	143160471	143161380	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	31506	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
121117	chr19	45975521	45975780	+	0	NA	Intergenic	Intergenic	-1785	NM_002516	4858		NM_002516	ENSG00000104967	NOVA2	ANOVA|NEDASB|NOVA-2|NOVA3	NOVA alternative splicing regulator 2	protein-coding
43382	chr11	77063101	77063930	+	0	NA	Intergenic	Intergenic	-3456	NM_004055	726		NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
204447	chr7	3722501	3722760	+	0	NA	intron (NM_152744, intron 4 of 44)	intron (NM_152744, intron 4 of 44)	-407055	NM_001079653	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
28073	chr10	43322571	43323350	+	0	NA	Intergenic	CpG	-48676	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
191210	chr6	5521351	5522030	+	0	NA	intron (NM_001374875, intron 4 of 6)	intron (NM_001374875, intron 4 of 6)	-63615	NR_125848	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
103366	chr17	78120851	78123400	+	0	NA	intron (NM_001375353, intron 10 of 19)	intron (NM_001375353, intron 10 of 19)	6630	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
232256	chr9	134405451	134406050	+	0	NA	promoter-TSS (NM_001291921)	promoter-TSS (NM_001291921)	-810	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
175416	chr4	70936421	70936680	+	0	NA	intron (NM_173468, intron 1 of 5)	HAL1|LINE|L1	34181	NM_173468	92597		NM_173468	ENSG00000173542	MOB1B	MATS2|MOB4A|MOBKL1A	MOB kinase activator 1B	protein-coding
7768	chr1	36181001	36181850	+	0	NA	TTS (NM_018067)	TTS (NM_018067)	25265	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
153508	chr22	26495971	26496530	+	0	NA	exon (NM_001346857, exon 13 of 16)	exon (NM_001346857, exon 13 of 16)	12373	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
198001	chr6	90082571	90083180	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	188406	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
77069	chr15	78888371	78888530	+	0	NA	intron (NM_206839, intron 6 of 12)	AluJo|SINE|Alu	15461	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
48450	chr12	9737021	9737750	+	0	NA	Intergenic	Intergenic	-4086	NM_001253750	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
94757	chr17	30816451	30816830	+	0	NA	intron (NM_015986, intron 1 of 7)	AluJr|SINE|Alu	8052	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
98282	chr17	46216851	46217280	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluJr|SINE|Alu	8302	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
222833	chr8	142520101	142520300	+	0	NA	intron (NM_001702, intron 19 of 30)	(TGGTGG)n|Simple_repeat|Simple_repeat	70551	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
17767	chr1	159046501	159047100	+	0	NA	intron (NM_001376587, intron 8 of 11)	intron (NM_001376587, intron 8 of 11)	29966	NM_004833	9447		NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding
64387	chr14	24151021	24151480	+	0	NA	exon (NM_017999, exon 9 of 21)	exon (NM_017999, exon 9 of 21)	3752	NM_017999	55072		NM_017999	ENSG00000092098	RNF31	HOIP|IMD115|Paul|ZIBRA	ring finger protein 31	protein-coding
210855	chr7	101094751	101095300	+	0	NA	3' UTR (NM_030961, exon 3 of 3)	3' UTR (NM_030961, exon 3 of 3)	9544	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
154040	chr22	30542521	30542780	+	0	NA	promoter-TSS (NM_001353443)	promoter-TSS (NM_001353443)	4	NM_001353441	730005		NM_001193336	ENSG00000214491	SEC14L6	-	SEC14 like lipid binding 6	protein-coding
84805	chr16	31069701	31070100	+	0	NA	intron (NM_024706, intron 1 of 2)	AluY|SINE|Alu	3602	NM_001172668	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
84491	chr16	30489321	30489580	+	0	NA	intron (NM_002209, intron 11 of 30)	intron (NM_002209, intron 11 of 30)	-14469	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
38381	chr11	44725151	44725600	+	0	NA	Intergenic	Intergenic	-1587	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
168217	chr3	141268151	141268750	+	0	NA	intron (NM_001282728, intron 3 of 6)	LTR101_Mam|LTR|ERVL	36625	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
198334	chr6	104525621	104525980	+	0	NA	Intergenic	Intergenic	333746	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
32549	chr10	103277501	103278200	+	0	NA	exon (NM_032727, exon 1 of 3)	exon (NM_032727, exon 1 of 3)	712	NM_032727	9118		NM_032727	ENSG00000148798	INA	NEF5|NF-66|NF66|TXBP-1	internexin neuronal intermediate filament protein alpha	protein-coding
26915	chr10	26464571	26465330	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	26609	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
194611	chr6	33535221	33535830	+	0	NA	Intergenic	AluJb|SINE|Alu	44751	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
144041	chr20	33591821	33592200	+	0	NA	intron (NM_005093, intron 2 of 11)	intron (NM_005093, intron 2 of 11)	29645	NM_001039709	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
167496	chr3	129179571	129180200	+	0	NA	intron (NM_001127196, intron 1 of 4)	AluSc8|SINE|Alu	4011	NM_001127196	7555		NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding
119874	chr19	41466971	41467330	+	0	NA	intron (NR_040109, intron 3 of 3)	SATR1|Satellite|Satellite	23994	NM_001130514	100170765		NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
200682	chr6	137230401	137230800	+	0	NA	Intergenic	Intergenic	-11215	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
161287	chr3	39322601	39323000	+	0	NA	Intergenic	L1MD1|LINE|L1	-6909	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
217662	chr8	30089421	30089680	+	0	NA	Intergenic	AluJb|SINE|Alu	-5858	NM_001128208	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
49402	chr12	22542351	22542650	+	0	NA	intron (NR_169598, intron 2 of 24)	L2c|LINE|L2	1697	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
88235	chr16	82172351	82172450	+	0	NA	Intergenic	Intergenic	-2176	NM_005792	10200		NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
75349	chr15	65512601	65513500	+	0	NA	intron (NR_135485, intron 1 of 20)	intron (NR_135485, intron 1 of 20)	4224	NR_135486	54878		NM_017743	ENSG00000074603	DPP8	DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141	dipeptidyl peptidase 8	protein-coding
176088	chr4	82897571	82897730	+	0	NA	TTS (NR_132760)	TTS (NR_132760)	575	NR_132760	106633809		NR_132760		SNORD144	SNORA97|ZL6	small nucleolar RNA, C/D box 144	snoRNA
71341	chr14	105427921	105428400	+	0	NA	intron (NM_001203258, intron 1 of 20)	L1ME1|LINE|L1	8333	NM_001203258	9112		NM_004689	ENSG00000182979	MTA1	-	metastasis associated 1	protein-coding
74376	chr15	58774371	58774930	+	0	NA	intron (NM_001040450, intron 1 of 8)	L2c|LINE|L2	3348	NM_001040450	54629		NM_019092	ENSG00000128923	MINDY2	FAM63B	MINDY lysine 48 deubiquitinase 2	protein-coding
188521	chr5	155765771	155766350	+	0	NA	Intergenic	Intergenic	-561104	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
220763	chr8	102403601	102404430	+	0	NA	intron (NM_001282873, intron 1 of 58)	L1ME1|LINE|L1	-8324	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
97330	chr17	43264321	43264650	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	2338	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
160989	chr3	37247051	37247750	+	0	NA	intron (NM_001172713, intron 1 of 22)	intron (NM_001172713, intron 1 of 22)	-3205	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
214587	chr7	150634451	150634750	+	0	NA	Intergenic	Intergenic	-1952	NM_001244072	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
130516	chr2	85606771	85606930	+	0	NA	3' UTR (NM_001013649, exon 4 of 4)	3' UTR (NM_001013649, exon 4 of 4)	3989	NR_046347	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
132490	chr2	105977751	105978250	+	0	NA	Intergenic	MLT1F1-int|LTR|ERVL-MaLR	-87688	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
192153	chr6	17086321	17086630	+	0	NA	Intergenic	Intergenic	-15575	NM_001190766	401236		NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
143174	chr20	24148001	24149000	+	0	NA	Intergenic	Intergenic	-51267	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
135958	chr2	172084301	172084500	+	0	NA	Intergenic	Intergenic	-1107	NM_001038493	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
13585	chr1	116243301	116243500	+	0	NA	Intergenic	Intergenic	-129844	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
72802	chr15	40055651	40056180	+	0	NA	intron (NR_040060, intron 2 of 2)	intron (NR_040060, intron 2 of 2)	16604	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
131613	chr2	96912301	96912530	+	0	NA	intron (NM_001122646, intron 12 of 16)	intron (NM_001122646, intron 12 of 16)	-6691	NR_110209	101927053		NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
208614	chr7	72959271	72959430	+	0	NA	TTS (NM_198853)	TTS (NM_198853)	-4587	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
28962	chr10	63240001	63240200	+	0	NA	intron (NM_001322252, intron 2 of 24)	L2a|LINE|L2	29123	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
130831	chr2	87073851	87074450	+	0	NA	intron (NR_026846, intron 1 of 10)	intron (NR_026846, intron 1 of 10)	2263	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
41107	chr11	65543271	65543830	+	0	NA	intron (NM_001130144, intron 16 of 27)	intron (NM_001130144, intron 16 of 27)	14678	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
12610	chr1	109088551	109088650	+	0	NA	Intergenic	AluSp|SINE|Alu	-2164	NM_020141	56900		NM_020141	ENSG00000215717	TMEM167B	AD-020|C1orf119	transmembrane protein 167B	protein-coding
24557	chr1	244868671	244868830	+	0	NA	Intergenic	AluSq|SINE|Alu	-4207	NM_031844	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
117117	chr19	19207851	19208630	+	0	NA	Intergenic	Intergenic	-3718	NM_004386	1463		NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
157197	chr22	43126871	43127030	+	0	NA	intron (NM_001197, intron 2 of 4)	G-rich|Low_complexity|Low_complexity	16200	NM_001197	638		NM_001197	ENSG00000100290	BIK	BIP1|BP4|NBK	BCL2 interacting killer	protein-coding
204331	chr7	2724621	2725280	+	0	NA	3' UTR (NM_001384742, exon 6 of 6)	3' UTR (NM_001384742, exon 6 of 6)	36748	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
47384	chr12	2720701	2720900	+	0	NA	Intergenic	Intergenic	-29643	NR_045725	100652846		NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	ncRNA
174429	chr4	39525251	39525550	+	0	NA	intron (NM_001184700, intron 1 of 10)	AluSx1|SINE|Alu	2039	NM_001184700	7358		NM_003359	ENSG00000109814	UGDH	DEE84|EIEE84|GDH|UDP-GlcDH|UDPGDH|UGD	UDP-glucose 6-dehydrogenase	protein-coding
212283	chr7	123743421	123743680	+	0	NA	intron (NM_003941, intron 1 of 10)	intron (NM_003941, intron 1 of 10)	5453	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
205890	chr7	25113571	25113730	+	0	NA	Intergenic	Intergenic	11610	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
85078	chr16	32902271	32902450	+	0	NA	Intergenic	Intergenic	-17218	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
135608	chr2	168119571	168119800	+	0	NA	intron (NM_013233, intron 10 of 17)	intron (NM_013233, intron 10 of 17)	127910	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
233378	chr9	137515371	137515600	+	0	NA	exon (NM_152286, exon 11 of 34)	exon (NM_152286, exon 11 of 34)	34917	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
228578	chr9	104743421	104743750	+	0	NA	Intergenic	Intergenic	-4098	NM_015469	25934		NM_015469	ENSG00000136783	NIPSNAP3A	HSPC299|NIPSNAP4|TASSC	nipsnap homolog 3A	protein-coding
185266	chr5	123761251	123761350	+	0	NA	Intergenic	Intergenic	215883	NM_001044723	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
201684	chr6	149544671	149545500	+	0	NA	intron (NM_139126, intron 1 of 12)	L2|LINE|L2	958	NM_139126	85313		NM_139126	ENSG00000131013	PPIL4	HDCME13P	peptidylprolyl isomerase like 4	protein-coding
20245	chr1	193448901	193449380	+	0	NA	Intergenic	Intergenic	144395	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
132761	chr2	109796151	109796900	+	0	NA	intron (NM_001384364, intron 1 of 22).2	intron (NM_001384364, intron 1 of 22).2	1916	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
61917	chr13	77740121	77740380	+	0	NA	promoter-TSS (NM_001242870)	promoter-TSS (NM_001242870)	-910	NM_001242871	122060		NM_144595	ENSG00000139737	SLAIN1	C13orf32	SLAIN motif family member 1	protein-coding
138683	chr2	213068651	213068950	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	81637	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
204004	chr7	1870171	1870530	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	-26097	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
106318	chr18	12903971	12904700	+	0	NA	Intergenic	MER41B|LTR|ERV1	-20000	NM_080422	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
124550	chr2	419071	419230	+	0	NA	Intergenic	L1PA13|LINE|L1	73505	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
212912	chr7	130904821	130905080	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	8360	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
155036	chr22	37482121	37482780	+	0	NA	intron (NM_002405, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	3934	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
146183	chr20	48756171	48756330	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	71749	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
6149	chr1	27393871	27394480	+	0	NA	exon (NM_005281, exon 2 of 2)	exon (NM_005281, exon 2 of 2)	1553	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
129845	chr2	72895571	72896030	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	8392	NM_003124	6697		NM_003124	ENSG00000116096	SPR	SDR38C1	sepiapterin reductase	protein-coding
191128	chr6	4060851	4060950	+	0	NA	3' UTR (NM_003913, exon 15 of 15)	3' UTR (NM_003913, exon 15 of 15)	18237	NM_173563	222826		NM_173563	ENSG00000145975	FAM217A	C6orf146	family with sequence similarity 217 member A	protein-coding
208713	chr7	73306421	73307080	+	0	NA	intron (NM_018044, intron 4 of 8)	AluSx1|SINE|Alu	2076	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
1431	chr1	2589621	2590280	+	0	NA	TTS (NM_033467)	TTS (NM_033467)	3173	NM_001195741	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
131714	chr2	97834571	97834730	+	0	NA	exon (NM_015348, exon 10 of 41)	exon (NM_015348, exon 10 of 41)	101350	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
129370	chr2	68788971	68789130	+	0	NA	intron (NM_001364819, intron 4 of 10)	AluY|SINE|Alu	14140	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
152142	chr22	19981021	19981280	+	0	NA	intron (NM_001670, intron 5 of 19)	intron (NM_001670, intron 5 of 19)	17397	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
98966	chr17	48678001	48678880	+	0	NA	Intergenic	CpG	44078	NM_032391	84366		NM_032391	ENSG00000159182	PRAC1	C17orf92|PRAC	PRAC1 small nuclear protein	protein-coding
58519	chr12	132191021	132191530	+	0	NA	Intergenic	Intergenic	-1580	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
156635	chr22	41617601	41617800	+	0	NA	intron (NM_015704, intron 1 of 5)	intron (NM_015704, intron 1 of 5)	3343	NM_015704	27351		NM_015704	ENSG00000100418	DESI1	D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|POST|PPPDE2	desumoylating isopeptidase 1	protein-coding
5934	chr1	26868071	26868430	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	5101	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
234209	chrX	12966601	12967500	+	0	NA	Intergenic	Intergenic	-8060	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
54178	chr12	77062921	77063350	+	0	NA	intron (NM_203394, intron 2 of 12)	MER44C|DNA|TcMar-Tigger	2434	NM_203394	144455		NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
104207	chr17	80481471	80481830	+	0	NA	Intergenic	Intergenic	-5043	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
138784	chr2	216059451	216059880	+	0	NA	intron (NM_018441, intron 3 of 7)	L1MB7|LINE|L1	22144	NM_018441	55825		NM_018441	ENSG00000115425	PECR	DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding
221662	chr8	125962721	125962980	+	0	NA	Intergenic	Intergenic	-11653	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
79284	chr16	536271	536430	+	0	NA	TTS (NR_049852)	TTS (NR_049852)	1034	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	ncRNA
201783	chr6	149970271	149970430	+	0	NA	intron (NM_001317089, intron 2 of 2)	intron (NM_001317089, intron 2 of 2)	6407	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
152099	chr22	19856871	19857130	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-2126	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
112019	chr19	5042951	5043050	+	0	NA	intron (NM_001370093, intron 5 of 11)	Tigger4b|DNA|TcMar-Tigger	73887	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
215622	chr7	159235521	159235600	+	0	NA	Intergenic	L2c|LINE|L2	-90603	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
51846	chr12	53465671	53466130	+	0	NA	TTS (NR_109828)	TTS (NR_109828)	1432	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
203155	chr6	167020371	167020530	+	0	NA	intron (NM_007045, intron 7 of 12)	intron (NM_007045, intron 7 of 12)	21053	NM_194429	11116		NM_007045	ENSG00000213066	CEP43	FGFR1OP|FOP	centrosomal protein 43	protein-coding
186880	chr5	139517571	139518730	+	0	NA	Intergenic	CpG	-35392	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
239096	chrY	10795971	10796500	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	885437	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
102503	chr17	75767911	75768750	+	0	NA	Intergenic	Intergenic	-3138	NM_000154	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
54871	chr12	95571301	95571500	+	0	NA	Intergenic	AluJr|SINE|Alu	-19924	NM_032147	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
87647	chr16	74568251	74568350	+	0	NA	intron (NM_001145667, intron 1 of 25)	MLT1K|LTR|ERVL-MaLR	38814	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
37535	chr11	18650901	18651380	+	0	NA	Intergenic	LTR41|LTR|ERVL	-16798	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
9382	chr1	47313321	47315080	+	0	NA	promoter-TSS (NM_001048166)	promoter-TSS (NM_001048166)	-53	NM_001282939	6491		NM_003035	ENSG00000123473	STIL	MCPH7|SIL	STIL centriolar assembly protein	protein-coding
197357	chr6	73456771	73457130	+	0	NA	Intergenic	Intergenic	-4653	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
177900	chr4	129023871	129024030	+	0	NA	intron (NM_144643, intron 5 of 20)	L1PA4|LINE|L1	69589	NM_144643	132320		NM_144643	ENSG00000151466	SCLT1	CAP-1A|CAP1A	sodium channel and clathrin linker 1	protein-coding
32287	chr10	102122771	102123000	+	0	NA	Intergenic	MIR|SINE|MIR	-2517	NM_001321612	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
42219	chr11	68038621	68039870	+	0	NA	intron (NM_001351059, intron 1 of 18)	intron (NM_001351059, intron 1 of 18)	220	NM_001351059	10312		NM_006019	ENSG00000110719	TCIRG1	ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3	T cell immune regulator 1, ATPase H+ transporting V0 subunit a3	protein-coding
129527	chr2	69693121	69694850	+	0	NA	intron (NM_001320698, intron 2 of 14)	intron (NM_001320698, intron 2 of 14)	-48149	NM_001320702	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
53443	chr12	65183421	65183680	+	0	NA	intron (NM_001167614, intron 1 of 12)	MIRb|SINE|MIR	13967	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
231730	chr9	131837351	131837650	+	0	NA	Intergenic	Intergenic	-97424	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
160548	chr3	30678351	30678650	+	0	NA	intron (NM_001024847, intron 6 of 7)	AluY|SINE|Alu	71899	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
169676	chr3	171827601	171828000	+	0	NA	Intergenic	Intergenic	-15549	NM_001164436	389177		NM_001164436	ENSG00000186329	TMEM212	-	transmembrane protein 212	protein-coding
48617	chr12	10369771	10370850	+	0	NA	intron (NR_120430, intron 1 of 3)	HERVIP10F-int|LTR|ERV1	6541	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
159883	chr3	16866371	16866980	+	0	NA	Intergenic	Intergenic	-18280	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
38689	chr11	46563801	46564000	+	0	NA	intron (NM_001367471, intron 1 of 18)	AluSp|SINE|Alu	23544	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
99875	chr17	56602451	56603150	+	0	NA	Intergenic	MIR|SINE|MIR	9101	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
206288	chr7	30025001	30025300	+	0	NA	intron (NR_046478, intron 1 of 4)	intron (NR_046478, intron 1 of 4)	1552	NM_017946	55033		NM_017946	ENSG00000106080	FKBP14	EDSKMH|EDSKSCL2|FKBP22|IPBP12	FKBP prolyl isomerase 14	protein-coding
17949	chr1	160397621	160398080	+	0	NA	Intergenic	Intergenic	-2714	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
177650	chr4	121227421	121228180	+	0	NA	promoter-TSS (NM_001244764)	promoter-TSS (NM_001244764)	-317	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
236522	chrX	72100701	72101450	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	30840	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
21034	chr1	203024351	203025030	+	0	NA	non-coding (NR_136531, exon 8 of 8)	non-coding (NR_136531, exon 8 of 8)	-1801	NM_001304331	8497		NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding
110015	chr19	1437851	1439330	+	0	NA	intron (NM_001308226, intron 1 of 3)	CpG	194	NM_001308226	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
150095	chr21	37430251	37430800	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	10226	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
19556	chr1	179034301	179035330	+	0	NA	intron (NM_001324311, intron 1 of 7)	intron (NM_001324311, intron 1 of 7)	8691	NM_001324311	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
16578	chr1	155010151	155011000	+	0	NA	intron (NM_001377454, intron 3 of 4)	intron (NM_001377454, intron 3 of 4)	7773	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
152393	chr22	20543601	20544550	+	0	NA	intron (NM_001003891, intron 2 of 17)	MLT1D-int|LTR|ERVL-MaLR	36028	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
112313	chr19	5893651	5893950	+	0	NA	TTS (NR_034166)	TTS (NR_034166)	9990	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
225041	chr9	33157771	33157930	+	0	NA	intron (NM_001378495, intron 1 of 5)	MIR|SINE|MIR	-9098	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
165428	chr3	98518871	98519030	+	0	NA	exon (NM_001040181, exon 3 of 5)	exon (NM_001040181, exon 3 of 5)	3952	NM_001040181	56650		NM_019895	ENSG00000080822	CLDND1	C3orf4|GENX-3745|Z38	claudin domain containing 1	protein-coding
93701	chr17	19386321	19386730	+	0	NA	intron (NM_002404, intron 2 of 5)	intron (NM_002404, intron 2 of 5)	665	NM_001198695	4239		NM_002404	ENSG00000166482	MFAP4	-	microfibril associated protein 4	protein-coding
71649	chr14	106802651	106802750	+	0	NA	Intergenic	Intergenic	48299	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
239068	chrY	7301451	7301750	+	0	NA	intron (NR_028062, intron 1 of 7)	L1MA9|LINE|L1	27628	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
75641	chr15	67241011	67242000	+	0	NA	intron (NM_001271885, intron 1 of 9)	intron (NM_001271885, intron 1 of 9)	13156	NM_024666	79719		NM_024666	ENSG00000103591	AAGAB	KPPP1|PPKP1|PPKP1A|p34	alpha and gamma adaptin binding protein	protein-coding
157222	chr22	43205551	43207500	+	0	NA	intron (NM_173050, intron 21 of 21)	intron (NM_173050, intron 21 of 21)	-6149	NR_134632	105373051		NR_134632	ENSG00000236272	SCUBE1-AS2	-	SCUBE1 antisense RNA 2	ncRNA
168854	chr3	152278651	152279150	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-9274	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
26630	chr10	22454901	22455180	+	0	NA	Intergenic	Intergenic	-17111	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
108630	chr18	76449001	76449200	+	0	NA	intron (NM_014643, intron 2 of 6)	intron (NM_014643, intron 2 of 6)	-42552	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
162985	chr3	49714101	49714300	+	0	NA	intron (NR_135218, intron 31 of 38)	intron (NR_135218, intron 31 of 38)	5484	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
123060	chr19	51345701	51346100	+	0	NA	intron (NM_001014763, intron 4 of 4)	intron (NM_001014763, intron 4 of 4)	-3776	NM_001163922	147645		NM_001163922	ENSG00000186806	VSIG10L	-	V-set and immunoglobulin domain containing 10 like	protein-coding
208136	chr7	63892971	63893150	+	0	NA	Intergenic	Intergenic	-105746	NR_145488								
21817	chr1	207323751	207324580	+	0	NA	intron (NM_001300904, intron 2 of 10)	intron (NM_001300904, intron 2 of 10)	2487	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
219595	chr8	80004031	80004150	+	0	NA	intron (NM_014018, intron 1 of 2)	L1PA5|LINE|L1	26169	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
233651	chrX	916651	916950	+	0	NA	Intergenic	Intergenic	292456	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
88058	chr16	81458321	81458650	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	13315	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
69451	chr14	94392651	94392750	+	0	NA	Intergenic	Intergenic	-2065	NM_001127704	5265		NM_000295	ENSG00000197249	SERPINA1	A1A|A1AT|AAT|PI|PI1|PRO2275|alpha1AT|nNIF	serpin family A member 1	protein-coding
3806	chr1	16740201	16741120	+	0	NA	TTS (NR_004400).3	TTS (NR_004400).3	144	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
33248	chr10	114459071	114459230	+	0	NA	intron (NM_001322889, intron 8 of 16)	intron (NM_001322889, intron 8 of 16)	-54372	NM_032550	84632		NM_032550	ENSG00000169129	AFAP1L2	CTB-1144G6.4|KIAA1914|XB130	actin filament associated protein 1 like 2	protein-coding
189181	chr5	171412951	171413050	+	0	NA	Intergenic	L1MC5a|LINE|L1	-6647	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
59122	chr13	21344451	21345350	+	0	NA	promoter-TSS (NR_103840)	promoter-TSS (NR_103840)	-41	NR_103841	100652865		NR_103840	ENSG00000224429	LINC00539	LINC00422	long intergenic non-protein coding RNA 539	ncRNA
214806	chr7	151200251	151200550	+	0	NA	exon (NM_001304419, exon 5 of 19)	exon (NM_001304419, exon 5 of 19)	5096	NM_001304419	392843		NM_001304419	ENSG00000278685	IQCA1L	IQCA1P1	IQ motif containing with AAA domain 1 like	protein-coding
178162	chr4	142360171	142360800	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	42648	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
143402	chr20	29408371	29408730	+	0	NA	Intergenic	Intergenic	8411	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
175325	chr4	68343001	68343630	+	0	NA	intron (NM_001031732, intron 1 of 16)	AluSx1|SINE|Alu	6775	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
68862	chr14	91307451	91307550	+	0	NA	intron (NM_001080414, intron 17 of 29)	intron (NM_001080414, intron 17 of 29)	-53620	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
116508	chr19	18152171	18154430	+	0	NA	intron (NR_162071, intron 1 of 14)	CpG	137	NR_162071	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
233901	chrX	1603201	1603600	+	0	NA	TTS (NR_027383)	TTS (NR_027383)	7945	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
96527	chr17	40347701	40348380	+	0	NA	intron (NM_001024809, intron 1 of 7)	intron (NM_001024809, intron 1 of 7)	-4904	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
61725	chr13	74123201	74123400	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	10629	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
185298	chr5	126602271	126602450	+	0	NA	intron (NM_032177, intron 1 of 4)	MIR|SINE|MIR	1413	NM_032177	51808		NM_032177	ENSG00000164902	PHAX	RNUXA	phosphorylated adaptor for RNA export	protein-coding
69110	chr14	92507121	92507630	+	0	NA	Intergenic	Intergenic	-6406	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
197965	chr6	89980201	89980600	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	85931	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
126177	chr2	26562351	26562930	+	0	NA	promoter-TSS (NM_001105519)	promoter-TSS (NM_001105519)	53	NM_001322426	339778		NM_001105519	ENSG00000173557	CIMIP2C	C2orf70|FAM166C	ciliary microtubule inner protein 2C	protein-coding
155584	chr22	38749451	38749550	+	0	NA	intron (NM_001199580, intron 7 of 18)	intron (NM_001199580, intron 7 of 18)	5966	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
190802	chr6	1378701	1378930	+	0	NA	Intergenic	CpG	-10761	NM_001452	2295		NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
77575	chr15	84990771	84991530	+	0	NA	intron (NM_173454, intron 1 of 20)	L1ME3Cz|LINE|L1	9176	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
196270	chr6	42941371	42941530	+	0	NA	intron (NR_134890, intron 2 of 4)	AluSx1|SINE|Alu	11970	NR_134891	107080644		NM_001318856		CNPY3-GNMT	-	CNPY3-GNMT readthrough	protein-coding
211131	chr7	102535271	102535780	+	0	NA	Intergenic	AluJr|SINE|Alu	9263	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
90478	chr17	1393201	1393950	+	0	NA	intron (NR_024058, intron 1 of 6)	AluSx|SINE|Alu	6647	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
123119	chr19	51702151	51702650	+	0	NA	intron (NR_024330, intron 2 of 7)	intron (NR_024330, intron 2 of 7)	-8944	NR_108100	102238594		NR_108100	ENSG00000269959	SPACA6-AS1	LINC01129|SPACA6P-AS	SPACA6 antisense RNA 1	ncRNA
231366	chr9	130663121	130664100	+	0	NA	promoter-TSS (NM_021619)	promoter-TSS (NM_021619)	-984	NM_021619	59335		NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding
25318	chr10	6221271	6221830	+	0	NA	intron (NR_136554, intron 9 of 11)	intron (NR_136554, intron 9 of 11)	18618	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
202335	chr6	157510621	157511180	+	0	NA	intron (NM_024630, intron 1 of 8)	intron (NM_024630, intron 1 of 8)	-18232	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
48952	chr12	12788371	12789200	+	0	NA	3' UTR (NM_030817, exon 2 of 2)	3' UTR (NM_030817, exon 2 of 2)	3126	NM_030817	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
74866	chr15	63556321	63556680	+	0	NA	intron (NR_046342, intron 5 of 15)	intron (NR_046342, intron 5 of 15)	-40887	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
200033	chr6	129691671	129691830	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	18427	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
118869	chr19	38659151	38660250	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	12051	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
44567	chr11	108226201	108227230	+	0	NA	intron (NM_001351834, intron 2 of 63)	AluSc|SINE|Alu	3186	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
182197	chr5	56824271	56824830	+	0	NA	intron (NM_005921, intron 1 of 19)	Tigger15a|DNA|TcMar-Tigger	9001	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
73616	chr15	44569651	44569950	+	0	NA	intron (NM_025137, intron 34 of 39)	AluSx|SINE|Alu	32653	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
134765	chr2	147288201	147288600	+	0	NA	Intergenic	L2b|LINE|L2	-556117	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
54003	chr12	75456971	75457980	+	0	NA	Intergenic	Intergenic	-23280	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
63291	chr13	113976001	113976900	+	0	NA	Intergenic	Intergenic	-2374	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
239172	chrY	12395851	12395950	+	0	NA	Intergenic	MER41A|LTR|ERV1	25690	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
75010	chr15	64010621	64011700	+	0	NA	intron (NM_001385000, intron 2 of 11)	MIRb|SINE|MIR	35325	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
49900	chr12	39441401	39441600	+	0	NA	intron (NM_001378440, intron 1 of 36)	intron (NM_001378440, intron 1 of 36)	1620	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
141929	chr20	1216951	1217530	+	0	NA	Intergenic	L1PA5|LINE|L1	-8804	NM_001384357	642636		NM_001136566	ENSG00000244588	RAD21L1	RAD21L|dJ545L17.2	RAD21 cohesin complex component like 1	protein-coding
25582	chr10	8036651	8037480	+	0	NA	Intergenic	Intergenic	15426	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
113756	chr19	10507101	10507700	+	0	NA	Intergenic	AluSq|SINE|Alu	-4044	NM_203500	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
88126	chr16	81610721	81610980	+	0	NA	promoter-TSS (NR_106759)	promoter-TSS (NR_106759)	-498	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
84780	chr16	31007171	31007530	+	0	NA	intron (NM_052874, intron 1 of 9)	intron (NM_052874, intron 1 of 9)	3288	NM_052874	112755		NM_052874	ENSG00000099365	STX1B	GEFSP9|STX1B1|STX1B2	syntaxin 1B	protein-coding
10427	chr1	65830451	65830550	+	0	NA	intron (NM_002600, intron 1 of 16)	L1MC3|LINE|L1	37605	NM_002600	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
92015	chr17	7465801	7466330	+	0	NA	exon (NM_001128833, exon 3 of 4).2	exon (NM_001128833, exon 3 of 4).2	13566	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
163289	chr3	50326901	50327100	+	0	NA	intron (NM_007275, intron 1 of 2)	intron (NM_007275, intron 1 of 2)	1238	NM_007275	11334		NM_007275	ENSG00000114383	TUSC2	C3orf11|FUS1|PAP|PDAP2	tumor suppressor 2, mitochondrial calcium regulator	protein-coding
204468	chr7	4713021	4713600	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	31015	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
85103	chr16	33839151	33839450	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	69923	NR_130772	104644205		NR_130771		ENPP7P13	DUNQU1	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13	pseudo
57482	chr12	122078171	122080050	+	0	NA	exon (NM_014938, exon 1 of 17)	exon (NM_014938, exon 1 of 17)	354	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
197851	chr6	88964701	88965280	+	0	NA	Intergenic	Intergenic	-1372	NM_001286428	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
215400	chr7	157500751	157501230	+	0	NA	Intergenic	CpG	34759	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
187099	chr5	140346101	140347180	+	0	NA	promoter-TSS (NM_001945)	promoter-TSS (NM_001945)	-37	NM_001945	1839		NM_001945	ENSG00000113070	HBEGF	DTR|DTS|DTSF|HEGFL	heparin binding EGF like growth factor	protein-coding
114236	chr19	11497501	11498280	+	0	NA	intron (NM_138783, intron 2 of 8)	intron (NM_138783, intron 2 of 8)	-2268	NR_107014	102465856		NR_107014	ENSG00000274713	MIR7974	hsa-mir-7974	microRNA 7974	ncRNA
50903	chr12	49288321	49289450	+	0	NA	Intergenic	Intergenic	-6262	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
89207	chr16	88613951	88614430	+	0	NA	intron (NM_144604, intron 8 of 17)	intron (NM_144604, intron 8 of 17)	-24382	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
212698	chr7	129773301	129773700	+	0	NA	Intergenic	Intergenic	1269	NR_029512	407053		NR_029512	ENSG00000199158	MIR96	DFNA50|MIRN96|hsa-mir-96|miR-96|miRNA96	microRNA 96	ncRNA
60155	chr13	39998221	39998550	+	0	NA	Intergenic	L2a|LINE|L2	-183424	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
178078	chr4	140122801	140123200	+	0	NA	intron (NM_018717, intron 1 of 4)	(TCTCTAC)n|Simple_repeat|Simple_repeat	-5015	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
186752	chr5	139313701	139314100	+	0	NA	intron (NM_199189, intron 5 of 17)	(TTATAGT)n|Simple_repeat|Simple_repeat	20150	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
193333	chr6	30187821	30188380	+	0	NA	intron (NM_001242783, intron 8 of 8).7	AluYe5|SINE|Alu	24554	NM_033229	89870		NM_033229	ENSG00000204610	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
56072	chr12	110592471	110592630	+	0	NA	Intergenic	AluSg|SINE|Alu	-9232	NM_139283	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
63562	chr14	20409601	20410800	+	0	NA	intron (NM_007110, intron 1 of 54)	L2c|LINE|L2	3301	NM_007110	7011		NM_007110	ENSG00000129566	TEP1	TLP1|TP1|TROVE1|VAULT2|p240	telomerase associated protein 1	protein-coding
138298	chr2	203720911	203721850	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	14741	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
33951	chr10	124629971	124630350	+	0	NA	intron (NM_014661, intron 4 of 4)	AluJb|SINE|Alu	-73868	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
187142	chr5	140544671	140545100	+	0	NA	intron (NM_020690, intron 34 of 35)	intron (NM_020690, intron 34 of 35)	-2777	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
95586	chr17	37134101	37134300	+	0	NA	intron (NM_198836, intron 45 of 55).2	intron (NM_198836, intron 45 of 55).2	100455	NR_036056	100422969		NR_036056	ENSG00000276326	MIR2909	-	microRNA 2909	ncRNA
187393	chr5	141884351	141884750	+	0	NA	Intergenic	AluSz|SINE|Alu	-6140	NM_002587	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
156552	chr22	41438521	41439100	+	0	NA	intron (NM_016272, intron 1 of 1)	intron (NM_016272, intron 1 of 1)	7991	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
204496	chr7	4768651	4769050	+	0	NA	3' UTR (NM_001037165, exon 9 of 9)	3' UTR (NM_001037165, exon 9 of 9)	-6773	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
12041	chr1	97986571	97986930	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-45010	NR_146275	109729128		NR_146275		LINC01930	-	long intergenic non-protein coding RNA 1930	ncRNA
4661	chr1	22398621	22399600	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-52741	NM_014870	9923		NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
222443	chr8	135465871	135466100	+	0	NA	intron (NM_006558, intron 1 of 8)	intron (NM_006558, intron 1 of 8)	8529	NM_006558	10656		NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH RNA binding domain containing, signal transduction associated 3	protein-coding
188958	chr5	160787351	160787450	+	0	NA	intron (NM_001366652, intron 1 of 24)	intron (NM_001366652, intron 1 of 24)	64811	NM_001366653	23120		NM_025153	ENSG00000118322	ATP10B	ATPVB	ATPase phospholipid transporting 10B (putative)	protein-coding
184018	chr5	91282771	91283500	+	0	NA	Intergenic	Intergenic	31267	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
18885	chr1	168181051	168181430	+	0	NA	intron (NM_001031800, intron 1 of 4)	AluSx|SINE|Alu	2278	NM_001031800	261726		NM_152902	ENSG00000143155	TIPRL	TIP|TIP41|TIPRL1	TOR signaling pathway regulator	protein-coding
5408	chr1	25523471	25524100	+	0	NA	Intergenic	Intergenic	-19821	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
112160	chr19	5637121	5637580	+	0	NA	intron (NM_001320571, intron 2 of 18)	AluY|SINE|Alu	14267	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
107703	chr18	49560571	49561030	+	0	NA	Intergenic	CpG	-1257	NM_001308006	9388		NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding
212666	chr7	129582851	129583030	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-28780	NM_001293163	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
193039	chr6	28523021	28523530	+	0	NA	Intergenic	Intergenic	-2606	NM_001509	2880		NM_001509	ENSG00000224586	GPX5	EGLP|GPx-5|GSHPx-5|HEL-S-75p	glutathione peroxidase 5	protein-coding
185683	chr5	131793101	131793300	+	0	NA	intron (NM_133372, intron 1 of 17)	AluJb|SINE|Alu	3817	NM_001008738	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
178934	chr4	158896301	158897280	+	0	NA	intron (NM_001366843, intron 17 of 17)	(TTTGTT)n|Simple_repeat|Simple_repeat	90951	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
230201	chr9	127811271	127811580	+	0	NA	intron (NR_110170, intron 14 of 14)	AluY|SINE|Alu	-4641	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
162492	chr3	48568301	48568500	+	0	NA	intron (NM_000094, intron 105 of 118)	intron (NM_000094, intron 105 of 118)	-4619	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
206794	chr7	36787651	36788560	+	0	NA	Intergenic	Intergenic	-63556	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
181405	chr5	40693321	40693680	+	0	NA	3' UTR (NM_000958, exon 3 of 3)	3' UTR (NM_000958, exon 3 of 3)	13585	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
179224	chr4	173530021	173530330	+	0	NA	promoter-TSS (NR_003679)	promoter-TSS (NR_003679)	54	NM_021973	9464		NM_021973	ENSG00000164107	HAND2	DHAND2|Hed|Thing2|bHLHa26|dHand	heart and neural crest derivatives expressed 2	protein-coding
61652	chr13	73929471	73929830	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	204279	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
188608	chr5	157192871	157193030	+	0	NA	intron (NM_005546, intron 1 of 16)	AluJr|SINE|Alu	12110	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
138266	chr2	203484201	203484700	+	0	NA	intron (NM_001329728, intron 4 of 15)	MER20|DNA|hAT-Charlie	50851	NM_203365	65059		NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
161051	chr3	38019701	38020100	+	0	NA	intron (NM_006225, intron 2 of 14)	intron (NM_006225, intron 2 of 14)	4620	NM_001130964	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
143620	chr20	31737821	31738080	+	0	NA	Intergenic	L1M5|LINE|L1	-1340	NM_012112	22974		NM_012112	ENSG00000088325	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2 microtubule nucleation factor	protein-coding
231398	chr9	130910871	130911030	+	0	NA	intron (NM_032843, intron 5 of 6)	LTR12C|LTR|ERV1	-14138	NM_198180	347148		NM_198180	ENSG00000188710	QRFP	26RFa|P518	pyroglutamylated RFamide peptide	protein-coding
170421	chr3	185590571	185591380	+	0	NA	intron (NM_021627, intron 2 of 16)	AluY|SINE|Alu	4680	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
70680	chr14	103092671	103093030	+	0	NA	Intergenic	Intergenic	-7294	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
200339	chr6	133960001	133960200	+	0	NA	intron (NM_004865, intron 1 of 6)	MamRTE1|LINE|RTE-BovB	6876	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
218107	chr8	41429871	41430630	+	0	NA	Intergenic	L1ME3G|LINE|L1	3595	NR_145746	109616980		NR_145746	ENSG00000238936	SNORD65B	-	small nucleolar RNA, C/D box 65B	snoRNA
239404	chrY	23695951	23696250	+	0	NA	Intergenic	L1PA6|LINE|L1	245522	NR_002176	474148		NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis expressed transcript, Y-linked 3B	ncRNA
8518	chr1	40985901	40986300	+	0	NA	intron (NR_125440, intron 3 of 17)	L2a|LINE|L2	-2419	NM_001301237	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
130337	chr2	84994171	84994530	+	0	NA	intron (NM_020122, intron 1 of 6)	L1MC5a|LINE|L1	23189	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
107954	chr18	58300671	58301030	+	0	NA	intron (NM_001243960, intron 5 of 28)	intron (NM_001243960, intron 5 of 28)	79279	NM_001144966	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
53819	chr12	69290771	69291280	+	0	NA	Intergenic	L1MB2|LINE|L1	-17807	NR_031692	100302182		NR_031692	ENSG00000283476	MIR1279	MIRN1279|hsa-mir-1279	microRNA 1279	ncRNA
167447	chr3	129086901	129087480	+	0	NA	TTS (NM_001204883)	TTS (NM_001204883)	26411	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
62236	chr13	98527551	98528050	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-5675	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
196543	chr6	44058551	44059180	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	15787	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
54669	chr12	93383901	93384100	+	0	NA	intron (NM_001301023, intron 1 of 4)	intron (NM_001301023, intron 1 of 4)	5422	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
37114	chr11	13297601	13298250	+	0	NA	intron (NR_147787, intron 1 of 19)	L2a|LINE|L2	20135	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
199740	chr6	125779921	125781850	+	0	NA	promoter-TSS (NM_001199619)	promoter-TSS (NM_001199619)	-230	NM_001199619	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
228986	chr9	113565821	113566080	+	0	NA	intron (NM_001351526, intron 2 of 8)	intron (NM_001351526, intron 2 of 8)	893	NM_001351526	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
169649	chr3	171455971	171456480	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	4180	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
237252	chrX	110229571	110230380	+	0	NA	intron (NM_001025580, intron 1 of 4)	L1PA6|LINE|L1	-4915	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
141194	chr2	239316571	239316730	+	0	NA	intron (NM_006037, intron 2 of 26)	L1MC4|LINE|L1	11188	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
5098	chr1	24832901	24833330	+	0	NA	intron (NM_013943, intron 4 of 5)	SVA_E|Retroposon|SVA	86301	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
45301	chr11	118148201	118148750	+	0	NA	intron (NM_174934, intron 1 of 4)	intron (NM_174934, intron 1 of 4)	-3042	NM_001142349	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
230080	chr9	127460671	127460830	+	0	NA	intron (NR_168892, intron 7 of 25)	MIRc|SINE|MIR	8495	NM_001005374	90678		NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
41309	chr11	65882321	65882850	+	0	NA	intron (NM_001335, intron 5 of 9)	intron (NM_001335, intron 5 of 9)	2748	NM_001335	1521		NM_001335	ENSG00000172543	CTSW	LYPN	cathepsin W	protein-coding
206693	chr7	36506221	36506480	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	93770	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
137561	chr2	197244301	197244880	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	46599	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
185784	chr5	132408271	132408780	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	-2404	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
36067	chr11	2975601	2976380	+	0	NA	intron (NM_001369382, intron 5 of 15).2	intron (NM_001369382, intron 5 of 15).2	-12097	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
175541	chr4	74671101	74671430	+	0	NA	Intergenic	Intergenic	123258	NM_001316963	685		NM_001729	ENSG00000174808	BTC	-	betacellulin	protein-coding
164981	chr3	71308621	71309080	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-4079	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
107604	chr18	48917001	48917800	+	0	NA	Intergenic	Intergenic	25407	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
221916	chr8	129496301	129496500	+	0	NA	intron (NR_130917, intron 1 of 3)	intron (NR_130917, intron 1 of 3)	-12258	NR_037457	100500839		NR_037457	ENSG00000263763	MIR3686	-	microRNA 3686	ncRNA
9852	chr1	54272951	54273250	+	0	NA	intron (NM_145716, intron 5 of 17)	intron (NM_145716, intron 5 of 17)	36657	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
182222	chr5	56854671	56855280	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	39426	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
204837	chr7	5766271	5766630	+	0	NA	intron (NM_207111, intron 1 of 16)	MLT1A|LTR|ERVL-MaLR	15213	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
134839	chr2	148648501	148648700	+	0	NA	intron (NM_015630, intron 1 of 13)	intron (NM_015630, intron 1 of 13)	3849	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
153621	chr22	28600501	28600780	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	79225	NM_001145418	23331		NM_015281	ENSG00000100154	TTC28	TPRBK	tetratricopeptide repeat domain 28	protein-coding
45972	chr11	121460571	121460730	+	0	NA	intron (NM_003105, intron 1 of 47)	AluSx4|SINE|Alu	8336	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
118735	chr19	38300721	38300980	+	0	NA	Intergenic	L2a|LINE|L2	-3401	NM_001317801	64073		NM_022125	ENSG00000167644	C19orf33	H2RSP|IMUP|IMUP-1|IMUP-2	chromosome 19 open reading frame 33	protein-coding
66540	chr14	61778351	61778650	+	0	NA	intron (NM_003082, intron 6 of 9)	intron (NM_003082, intron 6 of 9)	16080	NM_003082	6617		NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
47697	chr12	6425621	6426100	+	0	NA	Intergenic	Intergenic	-19095	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
73049	chr15	40890721	40890980	+	0	NA	Intergenic	Intergenic	-3600	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
205786	chr7	23636101	23636300	+	0	NA	intron (NM_138771, intron 3 of 3)	SVA_E|Retroposon|SVA	38818	NM_138771	90693		NM_138771	ENSG00000169193	CCDC126	-	coiled-coil domain containing 126	protein-coding
203075	chr6	166308221	166308780	+	0	NA	promoter-TSS (NM_175922)	promoter-TSS (NM_175922)	-108	NM_175922	285800		NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
210522	chr7	100225121	100225750	+	0	NA	intron (NR_166147, intron 2 of 4)	intron (NR_166147, intron 2 of 4)	6187	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
93921	chr17	21293071	21293480	+	0	NA	intron (NM_002756, intron 1 of 11)	intron (NM_002756, intron 1 of 11)	5239	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
198145	chr6	90502901	90503300	+	0	NA	Intergenic	Intergenic	83972	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
237268	chrX	110450071	110450350	+	0	NA	intron (NM_001385449, intron 2 of 3)	intron (NM_001385449, intron 2 of 3)	-9977	NM_001171689	9949		NM_015365	ENSG00000101935	AMMECR1	AMMERC1|MFHIEN	AMMECR nuclear protein 1	protein-coding
187100	chr5	140351551	140352130	+	0	NA	Intergenic	Intergenic	-5237	NM_001945	1839		NM_001945	ENSG00000113070	HBEGF	DTR|DTS|DTSF|HEGFL	heparin binding EGF like growth factor	protein-coding
136015	chr2	172436201	172436400	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	8714	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
12123	chr1	100051971	100052800	+	0	NA	intron (NM_033055, intron 2 of 11)	intron (NM_033055, intron 2 of 11)	14290	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
23634	chr1	230310521	230310800	+	0	NA	Intergenic	L2a|LINE|L2	115672	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
5497	chr1	25730521	25731050	+	0	NA	intron (NM_001385185, intron 1 of 10)	intron (NM_001385185, intron 1 of 10)	34630	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
13747	chr1	116933271	116934250	+	0	NA	intron (NM_020440, intron 1 of 8)	L1MEg|LINE|L1	23844	NM_020440	5738		NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
164224	chr3	56926851	56927150	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	-10564	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
20967	chr1	202483701	202484100	+	0	NA	intron (NM_032103, intron 1 of 11)	L1MA6|LINE|L1	21186	NM_032104	4660		NM_002481	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1 regulatory subunit 12B	protein-coding
132926	chr2	111431221	111431730	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	63686	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
74670	chr15	61896751	61896850	+	0	NA	intron (NM_017684, intron 64 of 82)	L1PA3|LINE|L1	163647	NM_017684	54832		NM_017684	ENSG00000129003	VPS13C	BLTP5C|PARK23	vacuolar protein sorting 13 homolog C	protein-coding
119130	chr19	39367571	39368230	+	0	NA	intron (NM_001384588, intron 4 of 13)	intron (NM_001384588, intron 4 of 13)	23206	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
215442	chr7	157715071	157715230	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	-139435	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
144105	chr20	33842521	33842980	+	0	NA	intron (NM_176812, intron 1 of 4)	intron (NM_176812, intron 1 of 4)	31402	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
219636	chr8	80165271	80165830	+	0	NA	intron (NR_105035, intron 1 of 6)	MER34|LTR|ERV1	5571	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
122776	chr19	50205401	50205880	+	0	NA	intron (NM_024729, intron 1 of 40)	MSR1|Satellite|Satellite	2012	NM_024729	79784		NM_024729	ENSG00000105357	MYH14	DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin	myosin heavy chain 14	protein-coding
45082	chr11	117075101	117076530	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluY|SINE|Alu	22613	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
227524	chr9	91420801	91421600	+	0	NA	intron (NM_001290000, intron 1 of 1)	CpG	2632	NM_005384	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
62933	chr13	111188871	111189900	+	0	NA	intron (NM_001113513, intron 1 of 19)	LTR12|LTR|ERV1	2591	NM_001113513	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
28944	chr10	63218471	63218830	+	0	NA	intron (NR_134512, intron 1 of 21)	intron (NR_134512, intron 1 of 21)	50573	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
130508	chr2	85599071	85599230	+	0	NA	exon (NM_001031738, exon 8 of 8)	exon (NM_001031738, exon 8 of 8)	3244	NM_001369917	129303		NM_153342	ENSG00000168890	TMEM150A	TM6P1|TMEM150|TTN1	transmembrane protein 150A	protein-coding
181263	chr5	39238701	39239400	+	0	NA	intron (NM_001243093, intron 1 of 18)	L1PA15|LINE|L1	-19487	NM_001349333	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
51153	chr12	50157871	50158030	+	0	NA	intron (NM_001281731, intron 1 of 10)	AluJb|SINE|Alu	9419	NM_001331070	91012		NM_147190	ENSG00000139624	CERS5	LASS5|Trh4	ceramide synthase 5	protein-coding
163191	chr3	50210601	50211000	+	0	NA	intron (NM_006841, intron 1 of 15)	intron (NM_006841, intron 1 of 15)	5529	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
61905	chr13	77345221	77346230	+	0	NA	Intergenic	Intergenic	-18631	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
186796	chr5	139372471	139372830	+	0	NA	intron (NM_152685, intron 13 of 14)	AluSg|SINE|Alu	10647	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
147803	chr20	62648201	62648680	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	5937	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
5007	chr1	24416711	24417730	+	0	NA	intron (NM_001322855, intron 2 of 12)	intron (NM_001322855, intron 2 of 12)	1195	NM_001322857	57185		NM_020448	ENSG00000001461	NIPAL3	DJ462O23.2|NPAL3|SLC57A5	NIPA like domain containing 3	protein-coding
165960	chr3	107810151	107810630	+	0	NA	3' UTR (NM_001276286, exon 17 of 17)	3' UTR (NM_001276286, exon 17 of 17)	67678	NR_024276	151658		NR_015414	ENSG00000241469	LINC00635	-	long intergenic non-protein coding RNA 635	ncRNA
151033	chr21	44580301	44580500	+	0	NA	exon (NM_198694, exon 1 of 1)	exon (NM_198694, exon 1 of 1)	204	NM_198694	386680		NM_198694	ENSG00000241123	KRTAP10-5	KAP10.5|KAP18-5|KAP18.5|KRTAP10.5|KRTAP18-5|KRTAP18.1|KRTAP18.5	keratin associated protein 10-5	protein-coding
190840	chr6	1607151	1607330	+	0	NA	non-coding (NR_125804, exon 2 of 2)	non-coding (NR_125804, exon 2 of 2)	1709	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
24067	chr1	235314151	235314580	+	0	NA	intron (NM_016374, intron 2 of 23)	MIRb|SINE|MIR	-12851	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
184494	chr5	100860221	100860700	+	0	NA	intron (NM_005668, intron 3 of 4)	intron (NM_005668, intron 3 of 4)	42822	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
7237	chr1	32339221	32339700	+	0	NA	Intergenic	L2b|LINE|L2	-3227	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
190375	chr5	179751751	179752650	+	0	NA	intron (NM_014757, intron 1 of 4)	AluSc|SINE|Alu	19378	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
2945	chr1	11896021	11896350	+	0	NA	Intergenic	AluSx|SINE|Alu	-11969	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
159022	chr3	10738821	10739200	+	0	NA	Intergenic	Intergenic	25199	NR_152730	285370		NR_027102	ENSG00000226567	LINC00606	-	long intergenic non-protein coding RNA 606	ncRNA
188962	chr5	162036471	162036630	+	0	NA	Intergenic	L1PA2|LINE|L1	-30915	NM_001375347	2566		NM_000816	ENSG00000113327	GABRG2	CAE2|DEE74|ECA2|EIEE74|FEB8|GEFSP3	gamma-aminobutyric acid type A receptor subunit gamma2	protein-coding
12788	chr1	109772871	109773030	+	0	NA	Intergenic	Intergenic	-9027	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
192073	chr6	16655971	16656130	+	0	NA	intron (NM_000332, intron 4 of 8)	AluSc|SINE|Alu	104134	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
143054	chr20	21413871	21414300	+	0	NA	Intergenic	L1PA7|LINE|L1	-16559	NM_033176	644524		NM_033176	ENSG00000125816	NKX2-4	NKX2.4|NKX2D	NK2 homeobox 4	protein-coding
135616	chr2	168176551	168176850	+	0	NA	intron (NM_013233, intron 2 of 17)	intron (NM_013233, intron 2 of 17)	70895	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
179981	chr5	877901	878100	+	0	NA	intron (NM_001375861, intron 12 of 16)	MLT1B|LTR|ERVL-MaLR	14522	NR_134296								
16813	chr1	155578151	155578450	+	0	NA	Intergenic	Intergenic	-15497	NM_001366177	55870		NM_018489	ENSG00000116539	ASH1L	ASH1|ASH1L1|KMT2H|MRD52	ASH1 like histone lysine methyltransferase	protein-coding
156568	chr22	41458701	41458900	+	0	NA	TTS (NM_032758)	TTS (NM_032758)	9892	NM_032758	84844		NM_032758	ENSG00000100410	PHF5A	INI|Rds3|SAP14b|SF3B7|SF3b14b|bK223H9.2	PHD finger protein 5A	protein-coding
127988	chr2	46937321	46937980	+	0	NA	intron (NM_001288953, intron 2 of 20)	AluJr|SINE|Alu	-3574	NM_001288955	57217		NM_020458	ENSG00000068724	TTC7A	GIDID|MINAT|TTC7	tetratricopeptide repeat domain 7A	protein-coding
217899	chr8	37888671	37889030	+	0	NA	intron (NM_025151, intron 1 of 4)	AluYk4|SINE|Alu	10647	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
3557	chr1	16154271	16155390	+	0	NA	intron (NM_004431, intron 1 of 16)	intron (NM_004431, intron 1 of 16)	1239	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
235110	chrX	40589721	40590200	+	0	NA	intron (NM_005765, intron 2 of 8)	intron (NM_005765, intron 2 of 8)	8990	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
106306	chr18	12878551	12879050	+	0	NA	intron (NM_080422, intron 1 of 9)	FRAM|SINE|Alu	5437	NM_002828	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
174649	chr4	40718851	40719150	+	0	NA	Intergenic	Intergenic	-30955	NM_001330648	79730		NM_024677	ENSG00000179299	NSUN7	-	NOP2/Sun RNA methyltransferase family member 7	protein-coding
41115	chr11	65554401	65555000	+	0	NA	intron (NM_001164266, intron 1 of 26)	MIRb|SINE|MIR	3528	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
89333	chr16	88747021	88747280	+	0	NA	intron (NM_001142864, intron 2 of 50)	FRAM|SINE|Alu	4383	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
113792	chr19	10561121	10561380	+	0	NA	exon (NM_023008, exon 7 of 19)	exon (NM_023008, exon 7 of 19)	4760	NM_023008	65095		NM_023008	ENSG00000129347	KRI1	-	KRI1 homolog	protein-coding
153712	chr22	29283501	29283900	+	0	NA	intron (NM_001163287, intron 6 of 8)	AluSq2|SINE|Alu	15432	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
151339	chr21	45632971	45633530	+	0	NA	Intergenic	CpG	-10475	NM_001382287	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
90549	chr17	1499771	1499930	+	0	NA	intron (NM_016532, intron 7 of 11)	(ATCA)n|Simple_repeat|Simple_repeat	-7164	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
162456	chr3	48475351	48475450	+	0	NA	intron (NM_016479, intron 3 of 5)	intron (NM_016479, intron 3 of 5)	-2242	NM_001272083	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
238591	chrX	153902351	153902780	+	0	NA	promoter-TSS (NR_027419)	promoter-TSS (NR_027419)	-60	NR_027419	554		NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|NDI1|V2R	arginine vasopressin receptor 2	protein-coding
223391	chr8	143917651	143918030	+	0	NA	exon (NM_000445, exon 33 of 33)	exon (NM_000445, exon 33 of 33)	21757	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
144564	chr20	35757121	35757480	+	0	NA	Intergenic	LTR50|LTR|ERVL	-14715	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
183512	chr5	79556221	79556780	+	0	NA	Intergenic	MIR3|SINE|MIR	-42366	NM_004272	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
88739	chr16	86321251	86321750	+	0	NA	Intergenic	MIR|SINE|MIR	24179	NR_024406	732275		NR_024406	ENSG00000168367	LINC00917	-	long intergenic non-protein coding RNA 917	ncRNA
3855	chr1	16948351	16949130	+	0	NA	intron (NM_014675, intron 18 of 36)	intron (NM_014675, intron 18 of 36)	26809	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
159944	chr3	17155871	17156030	+	0	NA	Intergenic	LTR16C|LTR|ERVL	222754	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
186768	chr5	139335051	139335480	+	0	NA	Intergenic	Intergenic	-6567	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
56791	chr12	120198221	120199200	+	0	NA	exon (NM_001002, exon 6 of 8)	exon (NM_001002, exon 6 of 8)	2401	NM_001002	6175		NM_001002	ENSG00000089157	RPLP0	L10E|LP0|P0|PRLP0|RPP0|uL10	ribosomal protein lateral stalk subunit P0	protein-coding
209365	chr7	76289771	76290130	+	0	NA	Intergenic	AluSq4|SINE|Alu	-12723	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
40612	chr11	64652771	64653800	+	0	NA	intron (NM_138732, intron 10 of 19)	intron (NM_138732, intron 10 of 19)	-9740	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
88568	chr16	85554001	85554600	+	0	NA	Intergenic	CpG	-57109	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
135134	chr2	157434271	157435180	+	0	NA	exon (NM_004288, exon 2 of 8)	exon (NM_004288, exon 2 of 8)	9364	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
221877	chr8	128514801	128515000	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	49779	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
22833	chr1	225424951	225425800	+	0	NA	intron (NM_194442, intron 1 of 13)	intron (NM_194442, intron 1 of 13)	2663	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
23353	chr1	228146771	228147650	+	0	NA	intron (NM_001242840, intron 4 of 6)	intron (NM_001242840, intron 4 of 6)	2514	NM_001159391	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
192379	chr6	24714651	24715030	+	0	NA	intron (NM_030939, intron 2 of 4)	AluSx|SINE|Alu	4314	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
68844	chr14	91289801	91290000	+	0	NA	intron (NM_001080414, intron 24 of 29)	intron (NM_001080414, intron 24 of 29)	-36020	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
116831	chr19	18571271	18574280	+	0	NA	promoter-TSS (NM_001321021)	promoter-TSS (NM_001321021)	-65	NM_001321021	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
214818	chr7	151233101	151234080	+	0	NA	5' UTR (NM_019015, exon 1 of 4)	5' UTR (NM_019015, exon 1 of 4)	1101	NM_019015	54480		NM_019015	ENSG00000033100	CHPF2	CSGLCA-T|CSGlcAT|ChSy-3|chPF-2	chondroitin polymerizing factor 2	protein-coding
21805	chr1	207181871	207182030	+	0	NA	Intergenic	Intergenic	77717	NM_000715	722		NM_000715	ENSG00000123838	C4BPA	C4BP|PRP	complement component 4 binding protein alpha	protein-coding
72793	chr15	40038351	40040280	+	0	NA	promoter-TSS (NM_003134)	promoter-TSS (NM_003134)	4	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
25499	chr10	7071471	7071630	+	0	NA	Intergenic	Intergenic	115234	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
21491	chr1	205715571	205715830	+	0	NA	3' UTR (NM_022731, exon 7 of 7)	3' UTR (NM_022731, exon 7 of 7)	34482	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
156596	chr22	41536601	41536800	+	0	NA	intron (NM_138338, intron 3 of 6)	AluSx1|SINE|Alu	7770	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
116516	chr19	18163021	18163280	+	0	NA	intron (NR_162071, intron 9 of 14)	intron (NR_162071, intron 9 of 14)	9987	NR_162071	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
204452	chr7	4479551	4479650	+	0	NA	Intergenic	LTR55|LTR|ERVL?	-202695	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
199702	chr6	125153621	125154100	+	0	NA	promoter-TSS (NM_001318903)	promoter-TSS (NM_001318903)	87	NM_001318903	7164		NM_003287	ENSG00000111907	TPD52L1	D53|TPD53	TPD52 like 1	protein-coding
8343	chr1	40197571	40197980	+	0	NA	intron (NM_012421, intron 4 of 7)	Charlie26a|DNA|hAT-Charlie	36388	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
80770	chr16	3180771	3181150	+	0	NA	Intergenic	Intergenic	-7244	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
15414	chr1	150248171	150248330	+	0	NA	Intergenic	AluYm1|SINE|Alu	-9524	NM_012113	23632		NM_012113	ENSG00000118298	CA14	CAXiV	carbonic anhydrase 14	protein-coding
231487	chr9	131383401	131383850	+	0	NA	intron (NM_001384822, intron 1 of 30)	AluSc8|SINE|Alu	9974	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
60867	chr13	45850421	45850950	+	0	NA	intron (NM_198849, intron 1 of 1)	intron (NM_198849, intron 1 of 1)	1068	NM_198849	283514		NM_198849	ENSG00000215475	SIAH3	-	siah E3 ubiquitin protein ligase family member 3	protein-coding
101489	chr17	67602721	67603330	+	0	NA	intron (NM_181671, intron 5 of 9)	AluJb|SINE|Alu	-114808	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
89654	chr16	89352051	89353050	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	32098	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
57599	chr12	122455171	122456530	+	0	NA	Intergenic	AluY|SINE|Alu	-33181	NM_198240	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
19066	chr1	169908571	169909330	+	0	NA	Intergenic	Intergenic	-14991	NM_181093	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
56982	chr12	120552501	120553650	+	0	NA	intron (NM_001330474, intron 3 of 16)	(T)n|Simple_repeat|Simple_repeat	18719	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
74521	chr15	60400321	60401300	+	0	NA	Intergenic	Intergenic	-2824	NM_001136015	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
49131	chr12	14914301	14914500	+	0	NA	3' UTR (NM_152321, exon 7 of 7)	3' UTR (NM_152321, exon 7 of 7)	14725	NM_001300784	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
237296	chrX	115729801	115730150	+	0	NA	Intergenic	CpG	-110989	NR_147173	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
127549	chr2	42342101	42342530	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	17723	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
238417	chrX	150625851	150626150	+	0	NA	intron (NM_001376907, intron 5 of 13)	intron (NM_001376907, intron 5 of 13)	57379	NM_000252	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
108419	chr18	69945301	69945500	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	2473	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
219114	chr8	65953351	65953750	+	0	NA	Intergenic	Intergenic	-61428	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
165648	chr3	101824821	101825430	+	0	NA	non-coding (NR_145993, exon 7 of 7)	non-coding (NR_145993, exon 7 of 7)	-2865	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
50206	chr12	46197001	46197450	+	0	NA	intron (NM_001278390, intron 16 of 16)	AluY|SINE|Alu	69291	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
94488	chr17	29283251	29283850	+	0	NA	intron (NM_020772, intron 2 of 3)	AluJb|SINE|Alu	10598	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
49838	chr12	32399051	32399980	+	0	NA	promoter-TSS (NM_001384126)	promoter-TSS (NM_001384126)	-43	NM_001384126	121512		NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
95763	chr17	38666321	38666780	+	0	NA	Intergenic	Intergenic	8407	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
55840	chr12	109053701	109054530	+	0	NA	promoter-TSS (NR_038996)	promoter-TSS (NR_038996)	-150	NR_038996	100131733		NR_038996		USP30-AS1	-	USP30 antisense RNA 1	ncRNA
48605	chr12	10331701	10331980	+	0	NA	Intergenic	L1MC4|LINE|L1	6452	NR_159946	113523642		NR_159946	ENSG00000256288	LINC02617	-	long intergenic non-protein coding RNA 2617	ncRNA
137407	chr2	196262751	196263800	+	0	NA	non-coding (NR_110225, exon 3 of 3)	non-coding (NR_110225, exon 3 of 3)	3251	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
216201	chr8	11862301	11862880	+	0	NA	intron (NM_001384723, intron 2 of 11)	intron (NM_001384723, intron 2 of 11)	5497	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
89215	chr16	88619441	88621230	+	0	NA	intron (NM_144604, intron 8 of 17)	AluJr|SINE|Alu	-18237	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
226254	chr9	67719471	67720150	+	0	NA	promoter-TSS (NR_103833)	promoter-TSS (NR_103833)	-631	NR_103833	100131997		NR_103833	ENSG00000274026	FAM27E3	-	family with sequence similarity 27 member E3	ncRNA
207409	chr7	44309251	44310080	+	0	NA	intron (NM_172080, intron 1 of 19)	CpG	15929	NM_001293170	816		NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB|CaMKIIbeta|MRD54	calcium/calmodulin dependent protein kinase II beta	protein-coding
174676	chr4	41880171	41880680	+	0	NA	non-coding (NR_104143, exon 2 of 2)	non-coding (NR_104143, exon 2 of 2)	2186	NR_104143	101927074		NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA
113825	chr19	10612951	10613450	+	0	NA	intron (NM_001145056, intron 1 of 21)	AluJb|SINE|Alu	10745	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
178158	chr4	142354141	142354350	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	-48301	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
69623	chr14	97655371	97655730	+	0	NA	intron (NR_033943, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	31108	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
83161	chr16	23463701	23464150	+	0	NA	3' UTR (NM_015044, exon 17 of 17)	3' UTR (NM_015044, exon 17 of 17)	-10736	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
63052	chr13	113109521	113109800	+	0	NA	intron (NM_000131, intron 2 of 8)	CpG	3869	NM_019616	2155		NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
7553	chr1	35031051	35032280	+	0	NA	intron (NM_007167, intron 1 of 15)	CpG	280	NM_007167	9204		NM_007167	ENSG00000163867	ZMYM6	Buster2|MYM|ZBED7|ZNF198L4|ZNF258	zinc finger MYM-type containing 6	protein-coding
142101	chr20	2649971	2650430	+	0	NA	Intergenic	Intergenic	-2432	NR_027700	10528		NM_006392	ENSG00000101361	NOP56	NOL5A|SCA36	NOP56 ribonucleoprotein	protein-coding
177024	chr4	107034301	107034700	+	0	NA	intron (NM_014421, intron 1 of 3)	intron (NM_014421, intron 1 of 3)	1813	NM_014421	27123		NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
3385	chr1	15729271	15730280	+	0	NA	intron (NM_015164, intron 13 of 19)	intron (NM_015164, intron 13 of 19)	-6483	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
3233	chr1	13783471	13783630	+	0	NA	intron (NM_012231, intron 8 of 9)	MIR1_Amn|SINE|MIR	34135	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
125312	chr2	10686371	10686530	+	0	NA	intron (NM_024894, intron 1 of 20)	L2a|LINE|L2	3525	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
209957	chr7	92671671	92672030	+	0	NA	intron (NM_001145306, intron 4 of 7)	intron (NM_001145306, intron 4 of 7)	-81460	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
139959	chr2	230870951	230871050	+	0	NA	intron (NM_001012514, intron 1 of 4)	intron (NM_001012514, intron 1 of 4)	6050	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
150783	chr21	43842771	43843100	+	0	NA	Intergenic	L1M4|LINE|L1	-22288	NM_020132	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
67746	chr14	73696501	73696700	+	0	NA	3' UTR (NM_001201366, exon 9 of 9)	3' UTR (NM_001201366, exon 9 of 9)	17784	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
63544	chr14	19974771	19975150	+	0	NA	promoter-TSS (NM_001005486)	promoter-TSS (NM_001005486)	-559	NM_001005486	81127		NM_001005486	ENSG00000169488	OR4K15	OR14-20|OR4K15Q	olfactory receptor family 4 subfamily K member 15	protein-coding
92007	chr17	7453051	7453150	+	0	NA	intron (NM_000747, intron 7 of 10)	L2|LINE|L2	8039	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
84618	chr16	30700671	30701930	+	0	NA	intron (NM_006662, intron 3 of 33)	intron (NM_006662, intron 3 of 33)	2129	NM_006662	10847		NM_006662	ENSG00000080603	SRCAP	DEHMBA|DOMO1|EAF1|FLHS|SWR1	Snf2 related CREBBP activator protein	protein-coding
83868	chr16	28914521	28914780	+	0	NA	intron (NM_024816, intron 4 of 12)	intron (NM_024816, intron 4 of 12)	10588	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
188134	chr5	150398731	150399830	+	0	NA	TTS (NM_001364084)	TTS (NM_001364084)	13476	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
40957	chr11	65337421	65338100	+	0	NA	intron (NM_001330308, intron 1 of 11)	AluJo|SINE|Alu	3908	NM_001330308	5977		NM_006268	ENSG00000133884	DPF2	CSS7|REQ|SMARCG2|UBID4|ubi-d4	double PHD fingers 2	protein-coding
232038	chr9	133416251	133416550	+	0	NA	intron (NM_001279351, intron 1 of 7)	FLAM_C|SINE|Alu	1610	NM_020385	57109		NM_020385	ENSG00000148300	REXO4	REX4|XPMC2|XPMC2H	REX4 homolog, 3'-5' exonuclease	protein-coding
223436	chr8	143964201	143964800	+	0	NA	intron (NM_000445, intron 2 of 32)	MLT1D|LTR|ERVL-MaLR	9029	NM_201378	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
152100	chr22	19872771	19873130	+	0	NA	Intergenic	Intergenic	-18076	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
122749	chr19	50104001	50104550	+	0	NA	promoter-TSS (NR_024214).5	promoter-TSS (NR_024214).5	-200	NR_024224	100169953		NR_024224		SNAR-A7	-	small NF90 (ILF3) associated RNA A7	snRNA
16449	chr1	154580371	154580530	+	0	NA	TTS (NM_000748)	TTS (NM_000748)	12672	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
139609	chr2	225029851	225031150	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	11968	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
209607	chr7	77651321	77651800	+	0	NA	Intergenic	Intergenic	44705	NR_134254	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
115185	chr19	14439871	14442400	+	0	NA	intron (NM_213560, intron 1 of 21)	intron (NM_213560, intron 1 of 21)	858	NM_213560	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
173484	chr4	9155621	9155880	+	0	NA	Intergenic	Intergenic	-17423	NM_001358418	100287045		NM_001358418	ENSG00000229924	FAM90A26	FAM90A26P	family with sequence similarity 90 member A26	protein-coding
38194	chr11	36379951	36380350	+	0	NA	intron (NM_024841, intron 2 of 9)	intron (NM_024841, intron 2 of 9)	4165	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
239052	chrY	7278171	7279050	+	0	NA	intron (NR_028062, intron 1 of 7)	L1MC4a|LINE|L1	4638	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
34630	chr10	133307371	133308400	+	0	NA	intron (NR_046330, intron 1 of 17)	Tigger3c|DNA|TcMar-Tigger	987	NM_006659	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
223897	chr9	306721	307380	+	0	NA	intron (NM_203447, intron 5 of 47)	LTR50|LTR|ERVL	34002	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
216080	chr8	10838771	10839300	+	0	NA	promoter-TSS (NR_125432)	promoter-TSS (NR_125432)	840	NM_017884	54984		NM_017884	ENSG00000254093	PINX1	Gno1|LPTL|LPTS|Pxr1	PIN2 (TERF1) interacting telomerase inhibitor 1	protein-coding
195471	chr6	37051201	37052680	+	0	NA	Intergenic	MIRc|SINE|MIR	46285	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
106581	chr18	22164921	22165180	+	0	NA	Intergenic	CpG	3918	NR_102763	100128893		NR_102763	ENSG00000266010	GATA6-AS1	BM742401|locus5689	GATA6 antisense RNA 1 (head to head)	ncRNA
40435	chr11	64191221	64191800	+	0	NA	intron (NM_001282653, intron 1 of 13)	AluSg|SINE|Alu	5339	NM_006819	10963		NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
126057	chr2	25590951	25591350	+	0	NA	intron (NM_001320935, intron 4 of 17)	MER52A|LTR|ERV1	59072	NM_001256308	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
4946	chr1	23967921	23968250	+	0	NA	3' UTR (NM_054016, exon 6 of 6)	3' UTR (NM_054016, exon 6 of 6)	8257	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
80250	chr16	2210571	2211530	+	0	NA	promoter-TSS (NM_182563)	promoter-TSS (NM_182563)	18	NM_182563	283870		NM_182563	ENSG00000182685	BRICD5	C16orf79	BRICHOS domain containing 5	protein-coding
107138	chr18	35124121	35124530	+	0	NA	intron (NR_046177, intron 4 of 6)	THE1C|LTR|ERVL-MaLR	82912	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
235363	chrX	44878801	44879000	+	0	NA	intron (NM_001291416, intron 2 of 28)	AluSx1|SINE|Alu	5712	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
176473	chr4	89438151	89438600	+	0	NA	Intergenic	Intergenic	-130575	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
44057	chr11	95232201	95233550	+	0	NA	promoter-TSS (NM_001271594)	promoter-TSS (NM_001271594)	-400	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
221371	chr8	123385671	123386380	+	0	NA	intron (NM_014109, intron 1 of 27)	L1MB3|LINE|L1	10422	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
18422	chr1	161454121	161454800	+	0	NA	Intergenic	CpG	-50997	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
150684	chr21	43658821	43660090	+	0	NA	promoter-TSS (NM_015056)	promoter-TSS (NM_015056)	33	NM_007031	11077		NM_007031	ENSG00000160207	HSF2BP	MEILB2|POF19	heat shock transcription factor 2 binding protein	protein-coding
116337	chr19	17845571	17846800	+	0	NA	intron (NM_000215, intron 1 of 23)	intron (NM_000215, intron 1 of 23)	1797	NM_000215	3718		NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
49720	chr12	31315201	31315800	+	0	NA	intron (NM_021238, intron 1 of 6)	intron (NM_021238, intron 1 of 6)	-8816	NR_026806	79857		NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
225282	chr9	34459651	34460680	+	0	NA	intron (NM_012144, intron 1 of 19)	intron (NM_012144, intron 1 of 19)	1360	NM_012144	27019		NM_012144	ENSG00000122735	DNAI1	CILD1|DIC1|ICS1|PCD|oda6	dynein axonemal intermediate chain 1	protein-coding
172997	chr4	4267971	4268330	+	0	NA	intron (NM_017816, intron 9 of 9)	intron (NM_017816, intron 9 of 9)	-19908	NM_032927	85013		NM_032927	ENSG00000132406	TMEM128	-	transmembrane protein 128	protein-coding
31385	chr10	94444351	94444650	+	0	NA	intron (NM_015188, intron 2 of 12)	intron (NM_015188, intron 2 of 12)	41959	NM_015188	23232		NM_015188	ENSG00000108239	TBC1D12	-	TBC1 domain family member 12	protein-coding
111772	chr19	4401451	4401550	+	0	NA	promoter-TSS (NM_003025)	promoter-TSS (NM_003025)	-953	NM_001199944	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
85988	chr16	57445621	57445880	+	0	NA	intron (NM_001308358, intron 1 of 7)	L2c|LINE|L2	1635	NM_020313	57019		NM_020313	ENSG00000005194	CIAPIN1	Anamorsin|CIAE2|DRE2|PRO0915	cytokine induced apoptosis inhibitor 1	protein-coding
167627	chr3	129592151	129592480	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	14361	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
50881	chr12	49201001	49201480	+	0	NA	Intergenic	Intergenic	-11916	NM_001270400	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
170641	chr3	187043071	187043450	+	0	NA	exon (NM_001353916, exon 2 of 6)	exon (NM_001353916, exon 2 of 6)	4542	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
228455	chr9	99840451	99840550	+	0	NA	intron (NM_173200, intron 6 of 8)	intron (NM_173200, intron 6 of 8)	18615	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
36557	chr11	6622601	6622980	+	0	NA	exon (NM_003737, exon 21 of 21)	exon (NM_003737, exon 21 of 21)	-3368	NM_000391	1200		NM_000391	ENSG00000166340	TPP1	CLN2|GIG1|LPIC|SCAR7|TPP-1	tripeptidyl peptidase 1	protein-coding
221658	chr8	125950401	125950680	+	0	NA	intron (NR_038446, intron 1 of 1)	intron (NR_038446, intron 1 of 1)	657	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
143440	chr20	30288801	30290000	+	0	NA	Intergenic	Intergenic	-2863	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
225913	chr9	40130821	40131680	+	0	NA	Intergenic	Intergenic	-192321	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
127576	chr2	42651971	42652530	+	0	NA	intron (NM_001282755, intron 7 of 17)	LTR49|LTR|ERV1	83618	NM_001330443	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
222724	chr8	141367221	141367480	+	0	NA	promoter-TSS (NM_005293).2	promoter-TSS (NM_005293).2	-64	NM_005293	2843		NM_005293	ENSG00000204882	GPR20	-	G protein-coupled receptor 20	protein-coding
158809	chr3	9715771	9716130	+	0	NA	intron (NM_153635, intron 12 of 19)	intron (NM_153635, intron 12 of 19)	12117	NM_153635	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
161171	chr3	39106801	39109130	+	0	NA	promoter-TSS (NM_001278790)	promoter-TSS (NM_001278790)	285	NM_001366899	199223		NM_145755	ENSG00000168026	TTC21A	IFT139A|SPGF37|STI2|Thm2	tetratricopeptide repeat domain 21A	protein-coding
43363	chr11	76805371	76805930	+	0	NA	Intergenic	L2b|LINE|L2	13898	NM_001318477	25987		NM_015516	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
71016	chr14	104757851	104758330	+	0	NA	intron (NM_006427, intron 3 of 3)	intron (NM_006427, intron 3 of 3)	4943	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
50188	chr12	46176121	46176580	+	0	NA	Intergenic	AluJr|SINE|Alu	90166	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
70718	chr14	103340721	103342200	+	0	NA	3' UTR (NM_183004, exon 11 of 11)	3' UTR (NM_183004, exon 11 of 11)	3611	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
85239	chr16	48282571	48282930	+	0	NA	intron (NM_031490, intron 8 of 14)	Tigger1|DNA|TcMar-Tigger	-35211	NM_001370497	85320		NM_032583	ENSG00000121270	ABCC11	EWWD|MRP8|WW	ATP binding cassette subfamily C member 11	protein-coding
139731	chr2	229801101	229801700	+	0	NA	intron (NM_001348327, intron 21 of 41)	intron (NM_001348327, intron 21 of 41)	-86845	NM_139072	92737		NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch like EGF repeat containing	protein-coding
99696	chr17	50837201	50837400	+	0	NA	intron (NM_175575, intron 1 of 1)	intron (NM_175575, intron 1 of 1)	1714	NM_175575	124857		NM_175575	ENSG00000173714	WFIKKN2	GASP-1|WFDC20B|WFIKKNRP|hGASP-1	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding
81231	chr16	4548571	4549450	+	0	NA	Intergenic	Intergenic	-7480	NM_001145011	342346		NM_001145011	ENSG00000205832	C16orf96	-	chromosome 16 open reading frame 96	protein-coding
57825	chr12	123229871	123230030	+	0	NA	intron (NR_103517, intron 2 of 23)	AluSx|SINE|Alu	3191	NM_022782	10198		NM_022782	ENSG00000051825	MPHOSPH9	MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding
78345	chr15	91055921	91056200	+	0	NA	Intergenic	Intergenic	33438	NR_110104	101926911		NR_110104	ENSG00000214432	VPS33B-DT	-	VPS33B divergent transcript	ncRNA
153441	chr22	25077401	25077750	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	35117	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
2329	chr1	9183001	9183380	+	0	NA	promoter-TSS (NR_132742)	promoter-TSS (NR_132742)	-852	NR_132742	106614088		NR_132742	ENSG00000228526	MIR34AHG	lnc34a	MIR34A host gene	ncRNA
27176	chr10	28545051	28545500	+	0	NA	intron (NM_100486, intron 3 of 12)	AluSp|SINE|Alu	12157	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
204920	chr7	6165171	6165330	+	0	NA	intron (NM_004227, intron 12 of 12)	intron (NM_004227, intron 12 of 12)	6887	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
221908	chr8	128684901	128685430	+	0	NA	Intergenic	Intergenic	-120486	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
235069	chrX	40167301	40167500	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	9877	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
22180	chr1	212290701	212290930	+	0	NA	intron (NM_006243, intron 1 of 12)	intron (NM_006243, intron 1 of 12)	5405	NM_006243	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
105067	chr17	82088401	82090980	+	0	NA	TTS (NR_132755)	TTS (NR_132755)	450	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
169429	chr3	161348801	161349000	+	0	NA	intron (NM_001320679, intron 2 of 3)	intron (NM_001320679, intron 2 of 3)	23183	NM_001040100	165679		NM_145035	ENSG00000196542	SPTSSB	ADMP|C3orf57|SSSPTB	serine palmitoyltransferase small subunit B	protein-coding
74409	chr15	58980321	58981050	+	0	NA	Intergenic	Intergenic	-6978	NM_001270528	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
98263	chr17	46186771	46187400	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	5697	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
222623	chr8	141086221	141086650	+	0	NA	Intergenic	Intergenic	-42154	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
113547	chr19	10228651	10229380	+	0	NA	intron (NM_004230, intron 1 of 1)	L2a|LINE|L2	-1398	NR_036206	100422925		NR_036206	ENSG00000264266	MIR4322	-	microRNA 4322	ncRNA
102272	chr17	75294171	75294330	+	0	NA	Intergenic	L1MD|LINE|L1	-4801	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
128271	chr2	54583371	54583930	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	25256	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
50723	chr12	48969621	48970450	+	0	NA	intron (NM_003394, intron 3 of 4)	CpG	1700	NM_003394	7480		NM_003394	ENSG00000169884	WNT10B	SHFM6|STHAG8|WNT-12	Wnt family member 10B	protein-coding
180583	chr5	14869751	14870810	+	0	NA	intron (NM_054027, intron 1 of 11)	intron (NM_054027, intron 1 of 11)	1498	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
205264	chr7	8149121	8149680	+	0	NA	intron (NM_001350838, intron 6 of 11)	intron (NM_001350838, intron 6 of 11)	112767	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
181686	chr5	50563971	50564900	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-101496	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
192346	chr6	24486151	24486250	+	0	NA	intron (NM_001503, intron 1 of 24)	intron (NM_001503, intron 1 of 24)	3378	NM_001503	2822		NM_001503	ENSG00000112293	GPLD1	GPIPLD|GPIPLDM|PIGPLD|PIGPLD1|PLD	glycosylphosphatidylinositol specific phospholipase D1	protein-coding
184006	chr5	90872921	90873480	+	0	NA	intron (NR_003149, intron 83 of 89)	intron (NR_003149, intron 83 of 89)	314403	NM_032119	84059		NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding
141515	chr2	241209771	241209930	+	0	NA	intron (NM_001370694, intron 13 of 24)	intron (NM_001370694, intron 13 of 24)	21173	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
41534	chr11	66281151	66281250	+	0	NA	intron (NM_182553, intron 1 of 5)	L2b|LINE|L2	3025	NR_073079	254263		NM_182553	ENSG00000174871	CNIH2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding
194526	chr6	33303271	33303430	+	0	NA	TTS (NM_172208).4	TTS (NM_172208).4	-3962	NM_001243738	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
97172	chr17	42666101	42666500	+	0	NA	intron (NM_001320509, intron 10 of 11)	intron (NM_001320509, intron 10 of 11)	7016	NM_016437	27175		NM_016437	ENSG00000037042	TUBG2	-	tubulin gamma 2	protein-coding
135962	chr2	172087971	172089230	+	0	NA	3' UTR (NM_001038493, exon 2 of 2)	3' UTR (NM_001038493, exon 2 of 2)	3093	NM_178120	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
201095	chr6	142838971	142839950	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	105716	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
177942	chr4	138241971	138242650	+	0	NA	promoter-TSS (NM_014331)	promoter-TSS (NM_014331)	39	NM_014331	23657		NM_014331	ENSG00000151012	SLC7A11	CCBR1|xCT	solute carrier family 7 member 11	protein-coding
215711	chr8	1482921	1483380	+	0	NA	intron (NM_001346810, intron 3 of 14)	CpG	138514	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
29692	chr10	72054271	72055550	+	0	NA	Intergenic	AluJb|SINE|Alu	33641	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
189299	chr5	172120121	172120900	+	0	NA	intron (NM_005990, intron 3 of 18)	intron (NM_005990, intron 3 of 18)	67714	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
91580	chr17	5219501	5219930	+	0	NA	intron (NR_152840, intron 4 of 5)	MER77|LTR|ERVL	15145	NM_001319190	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
148585	chr21	5088751	5089080	+	0	NA	Intergenic	Intergenic	-13145	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
188616	chr5	157201121	157201380	+	0	NA	intron (NM_005546, intron 1 of 16)	L1M4|LINE|L1	20410	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
66608	chr14	63652001	63652200	+	0	NA	Intergenic	AluSz|SINE|Alu	-10229	NM_001382426	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
232974	chr9	136972671	136972830	+	0	NA	non-coding (NR_157392, exon 5 of 5)	non-coding (NR_157392, exon 5 of 5)	3338	NR_157392	101928638		NM_001101674		LINC02692	C9orf141|PRR31	long intergenic non-protein coding RNA 2692	ncRNA
120745	chr19	45398051	45398980	+	0	NA	intron (NM_001142502, intron 1 of 12)	intron (NM_001142502, intron 1 of 12)	6554	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
55515	chr12	105105751	105106300	+	0	NA	intron (NR_121211, intron 1 of 1)	intron (NR_121211, intron 1 of 1)	1617	NR_121211	414300		NR_121211		LOC414300	-	uncharacterized LOC414300	ncRNA
170975	chr3	194556351	194556980	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-27603	NR_047573	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
217658	chr8	30085971	30086430	+	0	NA	Intergenic	AluY|SINE|Alu	-2992	NM_001284239	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
70386	chr14	101944751	101945400	+	0	NA	Intergenic	Intergenic	-19498	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
111576	chr19	4064371	4064900	+	0	NA	intron (NM_015898, intron 1 of 2)	CpG	894	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
28983	chr10	63259801	63260250	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSq2|SINE|Alu	9198	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
130621	chr2	86023321	86023580	+	0	NA	3' UTR (NM_015425, exon 34 of 34)	3' UTR (NM_015425, exon 34 of 34)	82436	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
56480	chr12	116187771	116187930	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	-39196	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
296	chr1	957621	957880	+	0	NA	intron (NM_015658, intron 2 of 18)	L2a|LINE|L2	1506	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
223879	chr9	268401	268830	+	0	NA	intron (NM_203447, intron 1 of 47)	intron (NM_203447, intron 1 of 47)	-4431	NM_001190458	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
10153	chr1	61018121	61018380	+	0	NA	Intergenic	AluSp|SINE|Alu	-47474	NR_110618	100996570		NR_110617	ENSG00000237928	NFIA-AS2	-	NFIA antisense RNA 2	ncRNA
110673	chr19	2261471	2262580	+	0	NA	Intergenic	Intergenic	-5608	NM_144616	126306		NM_144616	ENSG00000167476	JSRP1	JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding
165667	chr3	101858451	101858900	+	0	NA	intron (NM_031419, intron 11 of 11)	Tigger15a|DNA|TcMar-Tigger	9161	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
87393	chr16	70479721	70480180	+	0	NA	TTS (NM_001365426)	TTS (NM_001365426)	25355	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
43001	chr11	73972121	73972480	+	0	NA	Intergenic	MIRb|SINE|MIR	10543	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
226817	chr9	77456921	77457350	+	0	NA	intron (NR_121184, intron 2 of 4)	intron (NR_121184, intron 2 of 4)	9486	NR_121184	101927422		NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
127772	chr2	44171351	44171730	+	0	NA	intron (NM_177969, intron 1 of 4)	intron (NM_177969, intron 1 of 4)	2665	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
199381	chr6	116273221	116273480	+	0	NA	intron (NM_001322937, intron 2 of 6)	intron (NM_001322937, intron 2 of 6)	6580	NM_003309	7259		NM_003309	ENSG00000189241	TSPYL1	TSPYL	TSPY like 1	protein-coding
148359	chr20	63850571	63851130	+	0	NA	Intergenic	Intergenic	-10648	NM_080622	140701		NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
1107	chr1	2047801	2048580	+	0	NA	Intergenic	Intergenic	1880	NR_135509	105378591		NR_135509	ENSG00000226969	PRKCZ-DT	-	PRKCZ divergent transcript	ncRNA
52273	chr12	54546471	54547030	+	0	NA	3' UTR (NM_005337, exon 31 of 31)	3' UTR (NM_005337, exon 31 of 31)	-2643	NM_001288768	5153		NM_000924	ENSG00000123360	PDE1B	HEL-S-79p|PDE1B1|PDES1B	phosphodiesterase 1B	protein-coding
99859	chr17	55750651	55751580	+	0	NA	promoter-TSS (NM_001102402)	promoter-TSS (NM_001102402)	10	NM_001102402	58488		NM_021213	ENSG00000141179	PCTP	PC-TP|STARD2	phosphatidylcholine transfer protein	protein-coding
217908	chr8	37897621	37898100	+	0	NA	intron (NM_025151, intron 1 of 4)	intron (NM_025151, intron 1 of 4)	1637	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
190430	chr5	179836401	179837650	+	0	NA	TTS (NM_001017987).2	TTS (NM_001017987).2	16120	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
21780	chr1	206929301	206929730	+	0	NA	3' UTR (NM_002644, exon 11 of 11)	3' UTR (NM_002644, exon 11 of 11)	-7574	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
107027	chr18	32099251	32099780	+	0	NA	intron (NM_198128, intron 1 of 4)	AluSz|SINE|Alu	6909	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
30015	chr10	73778971	73779730	+	0	NA	Intergenic	AluSp|SINE|Alu	-2698	NM_203298	118487		NM_203298	ENSG00000172586	CHCHD1	C10orf34|C2360|MRP-S37|mS37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding
237029	chrX	102745801	102746480	+	0	NA	5' UTR (NM_001142530, exon 1 of 2)	5' UTR (NM_001142530, exon 1 of 2)	161	NM_001142529	80823		NM_030639	ENSG00000198908	GPRASP3	BHLHB9|GASP3|p60TRP	G protein-coupled receptor associated sorting protein family member 3	protein-coding
60377	chr13	40938471	40938630	+	0	NA	intron (NM_001370329, intron 9 of 9)	MIR|SINE|MIR	-16776	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
57070	chr12	121014921	121015330	+	0	NA	intron (NM_001286198, intron 1 of 6)	MIR|SINE|MIR	1362	NM_001286191	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
45553	chr11	118781071	118781230	+	0	NA	exon (NM_001257191, exon 3 of 14)	exon (NM_001257191, exon 3 of 14)	9798	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
139812	chr2	230343771	230343930	+	0	NA	intron (NM_138402, intron 2 of 18)	L1PA10|LINE|L1	16657	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
192891	chr6	27502471	27503300	+	0	NA	Intergenic	Intergenic	-29767	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
76271	chr15	74090251	74090550	+	0	NA	Intergenic	Intergenic	-7850	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
52086	chr12	54059701	54059900	+	0	NA	intron (NR_026655, intron 1 of 1)	intron (NR_026655, intron 1 of 1)	1546	NR_026655	440101		NR_026655	ENSG00000248265	FLJ12825	-	uncharacterized LOC440101	ncRNA
182059	chr5	55937321	55937580	+	0	NA	non-coding (NR_120480, exon 18 of 18)	non-coding (NR_120480, exon 18 of 18)	57513	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
153337	chr22	24400751	24401200	+	0	NA	intron (NM_001254732, intron 13 of 14)	L1MC5a|LINE|L1	-22622	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
229863	chr9	126423351	126423850	+	0	NA	intron (NM_033446, intron 7 of 9)	intron (NM_033446, intron 7 of 9)	-13096	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
156825	chr22	41937571	41938200	+	0	NA	TTS (NM_001304370)	TTS (NM_001304370)	2334	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
39050	chr11	47899821	47900100	+	0	NA	Intergenic	Intergenic	-51416	NM_015231	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
110774	chr19	2424021	2424430	+	0	NA	exon (NM_182973, exon 15 of 18)	exon (NM_182973, exon 15 of 18)	3361	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
207224	chr7	43669121	43670180	+	0	NA	intron (NM_001321199, intron 1 of 6)	LTR9B|LTR|ERV1	59873	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
6423	chr1	28090921	28091750	+	0	NA	Intergenic	Intergenic	-2698	NM_001282562	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
60668	chr13	43045271	43045680	+	0	NA	intron (NM_013238, intron 1 of 5)	LTR2B|LTR|ERV1	21889	NM_013238	29103		NM_013238	ENSG00000120675	DNAJC15	DNAJD1|HSD18|MCJ	DnaJ heat shock protein family (Hsp40) member C15	protein-coding
186747	chr5	139308901	139309480	+	0	NA	intron (NM_199189, intron 5 of 17)	intron (NM_199189, intron 5 of 17)	15440	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
194722	chr6	33790101	33790830	+	0	NA	Intergenic	Intergenic	-1335	NM_001348710	221496		NM_181336	ENSG00000161904	LEMD2	CTRCT42|LEM2|MARUPS|NET25|dJ482C21.1	LEM domain nuclear envelope protein 2	protein-coding
232127	chr9	133991451	133991750	+	0	NA	intron (NM_001134398, intron 1 of 29)	CpG	724	NM_001134398	7410		NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
102129	chr17	75059971	75060330	+	0	NA	intron (NM_015353, intron 4 of 5)	intron (NM_015353, intron 4 of 5)	12925	NM_015353	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
34915	chr11	406221	408490	+	0	NA	intron (NM_021805, intron 6 of 9)	CpG-3736	7644	NM_001135054	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
219755	chr8	81083551	81084250	+	0	NA	intron (NM_018440, intron 1 of 8)	AluSz|SINE|Alu	28168	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
49637	chr12	28234901	28235230	+	0	NA	intron (NM_001352086, intron 3 of 15)	MLT1G|LTR|ERVL-MaLR	-44327	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
32478	chr10	102660721	102661880	+	0	NA	Intergenic	Intergenic	16805	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
6880	chr1	31335001	31335280	+	0	NA	intron (NM_001282571, intron 3 of 6)	intron (NM_001282571, intron 3 of 6)	37936	NM_004102	2170		NM_004102	ENSG00000121769	FABP3	FABP11|H-FABP|M-FABP|MDGI|O-FABP	fatty acid binding protein 3	protein-coding
187157	chr5	140558621	140558880	+	0	NA	promoter-TSS (NR_045586)	promoter-TSS (NR_045586)	-657	NR_045586	10011		NM_001035235	ENSG00000213523	SRA1	SRA|SRAP|STRAA1|pp7684	steroid receptor RNA activator 1	protein-coding
38002	chr11	35066101	35066330	+	0	NA	Intergenic	Intergenic	71817	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
195519	chr6	37221921	37223180	+	0	NA	intron (NM_145316, intron 1 of 3)	MER52C|LTR|ERV1	35049	NM_001371555	221468		NM_145316	ENSG00000172738	TMEM217	C6orf128|dJ355M6.2	transmembrane protein 217	protein-coding
27415	chr10	31384471	31384830	+	0	NA	intron (NM_001323638, intron 4 of 12)	intron (NM_001323638, intron 4 of 12)	15105	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
137922	chr2	200966621	200967250	+	0	NA	Intergenic	Intergenic	-3275	NM_006190	4999		NM_006190	ENSG00000115942	ORC2	ORC2L	origin recognition complex subunit 2	protein-coding
233489	chr9	137883921	137884180	+	0	NA	intron (NR_121583, intron 1 of 3)	intron (NR_121583, intron 1 of 3)	6268	NM_000718	774		NM_000718	ENSG00000148408	CACNA1B	BIII|CACNL1A5|CACNN|Cav2.2|DYT23|NEDNEH	calcium voltage-gated channel subunit alpha1 B	protein-coding
215832	chr8	6718121	6718600	+	0	NA	intron (NM_018361, intron 1 of 7)	intron (NM_018361, intron 1 of 7)	9718	NM_018361	55326		NM_018361	ENSG00000155189	AGPAT5	1AGPAT5|LPAATE|LPLAT5	1-acylglycerol-3-phosphate O-acyltransferase 5	protein-coding
93174	chr17	17796621	17797780	+	0	NA	exon (NM_030665, exon 3 of 6)	exon (NM_030665, exon 3 of 6)	16345	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
103487	chr17	78362471	78363850	+	0	NA	intron (NR_110847, intron 2 of 4)	MIR|SINE|MIR	2158	NR_110846	101928674		NR_110845	ENSG00000266970	SOCS3-DT	-	SOCS3 divergent transcript	ncRNA
7286	chr1	32389501	32389700	+	0	NA	intron (NM_018045, intron 2 of 10)	intron (NM_018045, intron 2 of 10)	4841	NM_018045	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
160401	chr3	28207021	28207480	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-34369	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
232292	chr9	134453171	134453730	+	0	NA	Intergenic	Intergenic	46890	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
124790	chr2	7443171	7443330	+	0	NA	intron (NR_038432, intron 4 of 5)	intron (NR_038432, intron 4 of 5)	21989	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
137044	chr2	190879321	190879660	+	0	NA	Intergenic	AluJb|SINE|Alu	-1331	NM_001256310	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
175064	chr4	54042001	54042200	+	0	NA	intron (NM_012110, intron 3 of 5)	intron (NM_012110, intron 3 of 5)	22505	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
156547	chr22	41434201	41435130	+	0	NA	3' UTR (NM_016272, exon 2 of 2)	3' UTR (NM_016272, exon 2 of 2)	12136	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
2890	chr1	11652421	11653280	+	0	NA	intron (NM_012168, intron 1 of 5)	intron (NM_012168, intron 1 of 5)	-1557	NM_183412	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
118692	chr19	38115301	38115730	+	0	NA	intron (NM_015073, intron 8 of 21)	intron (NM_015073, intron 8 of 21)	-47581	NR_145800	109623473		NR_145800		SNORD152	-	small nucleolar RNA, C/D box 152	snoRNA
158612	chr3	4848301	4848780	+	0	NA	Intergenic	Intergenic	57961	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
67054	chr14	67694151	67695200	+	0	NA	intron (NM_016026, intron 1 of 6)	intron (NM_016026, intron 1 of 6)	1089	NM_001252650	51109		NM_016026	ENSG00000072042	RDH11	ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1	retinol dehydrogenase 11	protein-coding
59768	chr13	30146401	30146950	+	0	NA	Intergenic	AluJo|SINE|Alu	6399	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
47898	chr12	6747671	6747900	+	0	NA	TTS (NM_005439)	TTS (NM_005439)	5131	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
100125	chr17	58351701	58353900	+	0	NA	promoter-TSS (NM_003168)	promoter-TSS (NM_003168)	-599	NR_073470	6827		NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H|Supt4a	SPT4 homolog, DSIF elongation factor subunit	protein-coding
34727	chr10	133666721	133667000	+	0	NA	Intergenic	CpG	-40065	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
59539	chr13	27260621	27260930	+	0	NA	Intergenic	Intergenic	5374	NR_002575	619499		NR_002575	ENSG00000207051	SNORA27	ACA27	small nucleolar RNA, H/ACA box 27	snoRNA
131075	chr2	88751751	88752250	+	0	NA	Intergenic	Intergenic	-13902	NR_015424	645784		NR_015424	ENSG00000291127	ANKRD36BP2	-	ankyrin repeat domain 36B pseudogene 2	pseudo
68721	chr14	90801171	90801530	+	0	NA	intron (NM_001010854, intron 1 of 19)	MLT1D|LTR|ERVL-MaLR	15067	NM_001320421	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
155258	chr22	37993851	37994580	+	0	NA	intron (NM_001301130, intron 5 of 5)	intron (NM_001301130, intron 5 of 5)	5421	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
47191	chr12	807001	808550	+	0	NA	intron (NM_018979, intron 1 of 27)	AluY|SINE|Alu	54852	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
11206	chr1	88856101	88856500	+	0	NA	intron (NM_001514, intron 6 of 6)	intron (NM_001514, intron 6 of 6)	35267	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
102994	chr17	76749671	76750100	+	0	NA	intron (NR_148239, intron 7 of 12)	AluSc5|SINE|Alu	12207	NM_001242532	79157		NM_024311	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
154002	chr22	30404271	30404430	+	0	NA	intron (NM_033382, intron 2 of 10)	intron (NM_033382, intron 2 of 10)	7332	NM_001291932	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
181328	chr5	40387971	40388650	+	0	NA	Intergenic	Intergenic	-291605	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
151682	chr22	17122221	17122680	+	0	NA	intron (NR_103793, intron 1 of 3)	intron (NR_103793, intron 1 of 3)	855	NR_103793	100996342		NR_103793	ENSG00000235478	LINC01664	-	long intergenic non-protein coding RNA 1664	ncRNA
189277	chr5	172078521	172079280	+	0	NA	intron (NM_005990, intron 12 of 18)	intron (NM_005990, intron 12 of 18)	-72262	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
171295	chr3	195916401	195916600	+	0	NA	Intergenic	Intergenic	-7949	NM_001382273	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
67542	chr14	71142071	71142800	+	0	NA	Intergenic	Intergenic	-178041	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
124461	chr19	58519021	58520340	+	0	NA	promoter-TSS (NM_001316978)	promoter-TSS (NM_001316978)	-78	NM_032792	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
48573	chr12	10288871	10289450	+	0	NA	intron (NM_001351060, intron 2 of 8)	intron (NM_001351060, intron 2 of 8)	-15286	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
202144	chr6	155152351	155152650	+	0	NA	intron (NM_001384547, intron 6 of 25)	intron (NM_001384547, intron 6 of 25)	45513	NM_001384547	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
9589	chr1	52054001	52055600	+	0	NA	intron (NR_046406, intron 1 of 2)	intron (NR_046406, intron 1 of 2)	391	NM_015913	51060		NM_015913	ENSG00000117862	TXNDC12	AG1|AGR1|ERP16|ERP18|ERP19|PDIA16|TLP19|hAG-1|hTLP19	thioredoxin domain containing 12	protein-coding
172979	chr4	4106821	4107800	+	0	NA	Intergenic	CpG	119619	NM_177998	133060		NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
144913	chr20	36962271	36962450	+	0	NA	Intergenic	MER9a3|LTR|ERVK	-10652	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
148053	chr20	63239701	63240100	+	0	NA	TTS (NM_001363718)	TTS (NM_001363718)	1121	NR_036163	100423014		NR_036163	ENSG00000266463	MIR3196	mir-3196	microRNA 3196	ncRNA
8777	chr1	42784951	42786130	+	0	NA	promoter-TSS (NR_133055)	promoter-TSS (NR_133055)	508	NM_001354602	100129924		NM_001242750	ENSG00000274386	TMEM269	-	transmembrane protein 269	protein-coding
35685	chr11	1890851	1891150	+	0	NA	intron (NM_001289005, intron 10 of 10)	intron (NM_001289005, intron 10 of 10)	-5759	NR_120534	101927624		NR_120534		LINC01150	2G7|TCONS_00019134	long intergenic non-protein coding RNA 1150	ncRNA
167452	chr3	129091351	129091650	+	0	NA	intron (NM_001204885, intron 3 of 3)	intron (NM_001204885, intron 3 of 3)	30304	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
108820	chr18	78979151	78979680	+	0	NA	promoter-TSS (NM_171999)	promoter-TSS (NM_171999)	-860	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
144282	chr20	34676271	34677830	+	0	NA	promoter-TSS (NM_080476)	promoter-TSS (NM_080476)	42	NM_080476	128869		NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1|GPIBD21|NEDBSS|PIG-U	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
73310	chr15	41892321	41893250	+	0	NA	promoter-TSS (NR_135681)	promoter-TSS (NR_135681)	8	NR_135681	105370792		NR_135681	ENSG00000174171	LOC105370792	-	uncharacterized LOC105370792	ncRNA
149125	chr21	17644451	17644950	+	0	NA	Intergenic	Intergenic	-31799	NM_001130914	10950		NM_006806	ENSG00000154640	BTG3	ANA|ANA/BTG3|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding
182353	chr5	59562921	59563180	+	0	NA	intron (NM_001349242, intron 1 of 16)	intron (NM_001349242, intron 1 of 16)	23448	NM_001349242	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
116441	chr19	18030371	18030730	+	0	NA	Intergenic	Intergenic	22380	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
217371	chr8	28062401	28062800	+	0	NA	intron (NM_001010906, intron 7 of 18)	AluJb|SINE|Alu	21336	NM_001010906	389643		NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC|SLIPGC	nuclear GTPase, germinal center associated	protein-coding
237247	chrX	110156201	110156400	+	0	NA	intron (NM_001353849, intron 5 of 7)	L2c|LINE|L2	68760	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
68883	chr14	91328601	91329350	+	0	NA	intron (NM_001080414, intron 10 of 29)	intron (NM_001080414, intron 10 of 29)	-75095	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
107249	chr18	39566051	39566230	+	0	NA	intron (NR_024391, intron 2 of 3)	L1PA2|LINE|L1	56035	NR_030628	100126323		NR_030628	ENSG00000283615	MIR924	MIRN924|hsa-mir-924	microRNA 924	ncRNA
237323	chrX	118486351	118486530	+	0	NA	Intergenic	Intergenic	-9469	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
169204	chr3	156824121	156824380	+	0	NA	Intergenic	AluJr|SINE|Alu	-2057	NM_001004316	389170		NM_001004316	ENSG00000197980	LEKR1	-	leucine, glutamate and lysine rich 1	protein-coding
23018	chr1	226307451	226307800	+	0	NA	intron (NM_001270410, intron 1 of 14)	AluSp|SINE|Alu	1539	NM_001366245	286826		NM_173083	ENSG00000183814	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 DREAM MuvB core complex component	protein-coding
180055	chr5	1080001	1080400	+	0	NA	intron (NM_006598, intron 9 of 23).2	CpG	-17226	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
158966	chr3	10241251	10241350	+	0	NA	intron (NM_001570, intron 12 of 12)	AluSc8|SINE|Alu	-7159	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
189026	chr5	169218221	169218630	+	0	NA	intron (NM_003062, intron 3 of 35)	MER5A1|DNA|hAT-Charlie	45269	NR_030311	693170		NR_030311	ENSG00000207619	MIR585	MIRN585|hsa-mir-585|mir-585	microRNA 585	ncRNA
206554	chr7	35647401	35648250	+	0	NA	intron (NM_022373, intron 5 of 8)	MIRb|SINE|MIR	47310	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
26336	chr10	15171821	15172530	+	0	NA	Intergenic	AluY|SINE|Alu	-3482	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
126000	chr2	25308101	25308630	+	0	NA	intron (NR_135490, intron 2 of 23)	intron (NR_135490, intron 2 of 23)	20356	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
157059	chr22	42587571	42587730	+	0	NA	intron (NM_001278657, intron 7 of 8)	intron (NM_001278657, intron 7 of 8)	-5639	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
8725	chr1	42660151	42660450	+	0	NA	intron (NM_006347, intron 4 of 9)	intron (NM_006347, intron 4 of 9)	1877	NM_001330510	10465		NM_006347	ENSG00000171960	PPIH	CYP-20|CYPH|SnuCyp-20|USA-CYP	peptidylprolyl isomerase H	protein-coding
166111	chr3	111068971	111069530	+	0	NA	intron (NR_045114, intron 2 of 3)	intron (NR_045114, intron 2 of 3)	709	NR_045114	100506555		NR_045114		NECTIN3-AS1	PVRL3-AS1	NECTIN3 antisense RNA 1	ncRNA
183716	chr5	80997121	80997380	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-36343	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
72438	chr15	31636871	31637230	+	0	NA	non-coding (NR_038253, exon 6 of 8)	non-coding (NR_038253, exon 6 of 8)	233623	NM_001382637	161725		NM_130901	ENSG00000169918	OTUD7A	C15orf16|C16ORF15|CEZANNE2|NEDHS|OTUD7	OTU deubiquitinase 7A	protein-coding
194895	chr6	34689101	34689300	+	0	NA	intron (NM_022758, intron 1 of 3)	FAM|SINE|Alu	-6954	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
140156	chr2	231610071	231610430	+	0	NA	Intergenic	AluSq|SINE|Alu	17386	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
234743	chrX	22081571	22081750	+	0	NA	intron (NM_001282754, intron 5 of 20)	intron (NM_001282754, intron 5 of 20)	49335	NM_000444	5251		NM_000444	ENSG00000102174	PHEX	HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH	phosphate regulating endopeptidase X-linked	protein-coding
42927	chr11	73399351	73399850	+	0	NA	TTS (NM_001286051)	TTS (NM_001286051)	22932	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
71193	chr14	105058901	105060100	+	0	NA	intron (NM_001278694, intron 1 of 4)	MER4A1|LTR|ERV1	5930	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
25563	chr10	7539121	7539380	+	0	NA	Intergenic	Intergenic	80423	NM_032817	80760		NM_030569	ENSG00000123243	ITIH5	ITI-HC5|PP14776	inter-alpha-trypsin inhibitor heavy chain 5	protein-coding
37268	chr11	14670021	14670330	+	0	NA	intron (NM_001363569, intron 1 of 15)	MIR|SINE|MIR	26371	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
113568	chr19	10256701	10257680	+	0	NA	intron (NM_146387, intron 6 of 9)	intron (NM_146387, intron 6 of 9)	4976	NM_015956	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
236961	chrX	101287421	101287680	+	0	NA	intron (NM_024885, intron 1 of 12)	intron (NM_024885, intron 1 of 12)	3784	NM_001168474	54457		NM_024885	ENSG00000102387	TAF7L	CT40|TAF2Q	TATA-box binding protein associated factor 7 like	protein-coding
217877	chr8	37856401	37856600	+	0	NA	Intergenic	Intergenic	-6639	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
156792	chr22	41912101	41912300	+	0	NA	intron (NM_001207020, intron 1 of 3)	MIR3|SINE|MIR	2874	NM_001353438	440829		NM_001207020	ENSG00000234965	SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
116712	chr19	18446051	18446430	+	0	NA	intron (NM_006532, intron 10 of 11)	CpG	-8107	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
199506	chr6	118684301	118684930	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	25460	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
146462	chr20	49705521	49706050	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	8093	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
96332	chr17	40035101	40035300	+	0	NA	exon (NM_001267797, exon 5 of 25)	exon (NM_001267797, exon 5 of 25)	-7555	NR_102369	101340251		NR_102369	ENSG00000238793	SNORD124	-	small nucleolar RNA, C/D box 124	snoRNA
234644	chrX	20117301	20117780	+	0	NA	promoter-TSS (NM_001168467)	promoter-TSS (NM_001168467)	-633	NM_001168466	256714		NM_152780	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
152157	chr22	20020521	20022330	+	0	NA	intron (NM_001322172, intron 1 of 7)	CpG	315	NM_152906	128989		NM_152906	ENSG00000183597	TANGO2	C22orf25|MECRCN	transport and golgi organization 2 homolog	protein-coding
105048	chr17	82064751	82064850	+	0	NA	intron (NM_022156, intron 2 of 13)	CpG	1004	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
43873	chr11	88332201	88332400	+	0	NA	intron (NM_148170, intron 2 of 3)	intron (NM_148170, intron 2 of 3)	5436	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
36231	chr11	3641801	3643250	+	0	NA	promoter-TSS (NR_123732)	promoter-TSS (NR_123732)	-209	NM_001079536	116969		NM_053017	ENSG00000167311	ART5	ARTC5	ADP-ribosyltransferase 5	protein-coding
173275	chr4	7054321	7054580	+	0	NA	exon (NM_152293, exon 2 of 2)	exon (NM_152293, exon 2 of 2)	-8219	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
120469	chr19	44728201	44728400	+	0	NA	Intergenic	L1ME4b|LINE|L1	-20408	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
209650	chr7	77804371	77804730	+	0	NA	intron (NM_001366086, intron 1 of 17)	AluSq|SINE|Alu	5579	NM_001366087	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
56266	chr12	112014101	112015380	+	0	NA	intron (NM_001034025, intron 1 of 1)	intron (NM_001034025, intron 1 of 1)	1314	NM_006817	10961		NM_006817	ENSG00000089248	ERP29	C12orf8|ERp28|ERp31|HEL-S-107|PDI-DB|PDIA9	endoplasmic reticulum protein 29	protein-coding
20749	chr1	200980751	200981580	+	0	NA	intron (NM_017596, intron 27 of 33)	intron (NM_017596, intron 27 of 33)	42549	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
126281	chr2	27198821	27199730	+	0	NA	TTS (NM_021095)	TTS (NM_021095)	12993	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
87023	chr16	68266251	68267050	+	0	NA	5' UTR (NM_003983, exon 2 of 11)	5' UTR (NM_003983, exon 2 of 11)	2124	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
109156	chr19	198451	199330	+	0	NA	non-coding (NR_028324, exon 3 of 3)	non-coding (NR_028324, exon 3 of 3)	3319	NR_028324	399844		NM_001004321		LINC01002	-	long intergenic non-protein coding RNA 1002	ncRNA
125737	chr2	20664551	20664650	+	0	NA	Intergenic	Intergenic	-2544	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
133095	chr2	112599951	112600580	+	0	NA	Intergenic	Intergenic	15411	NM_001304354	84269		NM_032309	ENSG00000125611	CHCHD5	C2orf9|CHTM1|MIC14|MIX14	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding
57463	chr12	122004251	122004900	+	0	NA	TTS (NM_144668)	TTS (NM_144668)	-17309	NM_020993	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
63583	chr14	20471951	20472980	+	0	NA	exon (NM_000270, exon 2 of 6)	exon (NM_000270, exon 2 of 6)	3059	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
236855	chrX	79365321	79365930	+	0	NA	intron (NM_004867, intron 1 of 5)	intron (NM_004867, intron 1 of 5)	1709	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
86385	chr16	66604501	66605850	+	0	NA	intron (NM_144601, intron 2 of 5)	CpG	444	NR_037619	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
66807	chr14	64729501	64730030	+	0	NA	intron (NM_001308147, intron 3 of 16)	intron (NM_001308147, intron 3 of 16)	25341	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
223846	chr9	21421	21680	+	0	NA	intron (NM_001378090, intron 2 of 10)	intron (NM_001378090, intron 2 of 10)	7906	NM_001378090	100287171		NM_182905	ENSG00000181404	WASHC1	FAM39E|WASH|WASH1	WASH complex subunit 1	protein-coding
164409	chr3	58490821	58491080	+	0	NA	Intergenic	Intergenic	-1146	NM_001128214	200845		NM_153331	ENSG00000168301	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
225105	chr9	33445221	33446000	+	0	NA	intron (NM_004925, intron 1 of 5)	intron (NM_004925, intron 1 of 5)	1983	NM_004925	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
137450	chr2	196984071	196984630	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-57643	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
13969	chr1	120448871	120449430	+	0	NA	intron (NR_102405, intron 8 of 21)	intron (NR_102405, intron 8 of 21)	-15041	NR_003242	767846		NR_003242	ENSG00000293296	PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo
146575	chr20	50085321	50086300	+	0	NA	intron (NM_001257394, intron 1 of 2)	L2|LINE|L2	27340	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
82220	chr16	15020821	15021400	+	0	NA	intron (NM_001324019, intron 12 of 22)	AluJb|SINE|Alu	-10713	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
209900	chr7	91949351	91949650	+	0	NA	intron (NM_147185, intron 1 of 49)	MamSINE1|SINE|tRNA-RTE	8638	NM_005751	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
111549	chr19	4040171	4040730	+	0	NA	Intergenic	L1MB8|LINE|L1	25079	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
197193	chr6	63585521	63585780	+	0	NA	Intergenic	L1PA10|LINE|L1	13170	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
81557	chr16	9121651	9121750	+	0	NA	TTS (NM_014117)	TTS (NM_014117)	30056	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
26907	chr10	26450871	26451030	+	0	NA	intron (NM_019043, intron 2 of 14)	AluSx|SINE|Alu	12609	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
27632	chr10	32948251	32949700	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	8919	NM_133376	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
169810	chr3	177060501	177060730	+	0	NA	intron (NM_001374330, intron 2 of 14)	intron (NM_001374330, intron 2 of 14)	135863	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
11723	chr1	91881121	91881380	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	4901	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
235228	chrX	41376271	41376830	+	0	NA	Intergenic	Intergenic	42384	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
80934	chr16	3819721	3820630	+	0	NA	intron (NM_004380, intron 2 of 30)	intron (NM_004380, intron 2 of 30)	59945	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
205582	chr7	21408601	21408800	+	0	NA	Intergenic	Intergenic	-19383	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
197342	chr6	73438421	73438680	+	0	NA	intron (NM_138441, intron 3 of 4)	AluSc|SINE|Alu	13747	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
210726	chr7	100611721	100613780	+	0	NA	5' UTR (NM_001040099, exon 1 of 5)	5' UTR (NM_001040099, exon 1 of 5)	210	NM_001040099	64598		NM_023948	ENSG00000106330	MOSPD3	CDS3|NET30	motile sperm domain containing 3	protein-coding
107276	chr18	44362471	44362830	+	0	NA	intron (NR_110792, intron 2 of 4)	L1PA7|LINE|L1	169047	NR_110792	101927921		NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA
122465	chr19	49529451	49530180	+	0	NA	intron (NM_020650, intron 2 of 6)	AluSx1|SINE|Alu	1812	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
61229	chr13	49669721	49670000	+	0	NA	intron (NM_032565, intron 1 of 3)	intron (NM_032565, intron 1 of 3)	21626	NM_032565	84650		NM_032565	ENSG00000123179	EBPL	EBRP	EBP like	protein-coding
65221	chr14	49805201	49805600	+	0	NA	intron (NM_001301732, intron 18 of 31)	AluSz|SINE|Alu	37247	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
183133	chr5	74902801	74903700	+	0	NA	Intergenic	MER74A|LTR|ERVL	-36284	NM_015566	26049		NM_015566	ENSG00000198780	FAM169A	SLAP|SLAP75	family with sequence similarity 169 member A	protein-coding
55134	chr12	98605301	98605900	+	0	NA	3' UTR (NM_002635, exon 8 of 8)	3' UTR (NM_002635, exon 8 of 8)	5965	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
18920	chr1	168421321	168422200	+	0	NA	intron (NR_037851, intron 2 of 3)	intron (NR_037851, intron 2 of 3)	896	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
41476	chr11	66157271	66157850	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	87288	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
44441	chr11	104794571	104794730	+	0	NA	Intergenic	L1MC5|LINE|L1	104020	NR_034065	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
79946	chr16	1763451	1763550	+	0	NA	intron (NM_001318852, intron 16 of 31)	intron (NM_001318852, intron 16 of 31)	8209	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
165305	chr3	85504451	85504980	+	0	NA	promoter-TSS (NM_001256505)	promoter-TSS (NM_001256505)	99	NM_001256505	253559		NM_153184	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|SynCAM-2|synCAM2	cell adhesion molecule 2	protein-coding
84817	chr16	31082601	31083000	+	0	NA	TTS (NM_001039503)	TTS (NM_001039503)	6009	NM_001039503	339105		NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	serine protease 53	protein-coding
83667	chr16	28362551	28362850	+	0	NA	intron (NM_001282524, intron 1 of 6)	intron (NM_001282524, intron 1 of 6)	160	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
77559	chr15	84818171	84818530	+	0	NA	intron (NM_020778, intron 1 of 13)	intron (NM_020778, intron 1 of 13)	994	NM_020778	57538		NM_020778	ENSG00000136383	ALPK3	CMH27|MAK|MIDORI	alpha kinase 3	protein-coding
172946	chr4	3524051	3524750	+	0	NA	intron (NR_110005, intron 2 of 7)	intron (NR_110005, intron 2 of 7)	7749	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
83378	chr16	25838701	25839000	+	0	NA	intron (NM_006040, intron 1 of 1)	intron (NM_006040, intron 1 of 1)	146891	NM_006040	9951		NM_006040	ENSG00000182601	HS3ST4	3-OST-4|30ST4|3OST4|h3-OST-4	heparan sulfate-glucosamine 3-sulfotransferase 4	protein-coding
218070	chr8	38922451	38922550	+	0	NA	intron (NM_021623, intron 2 of 11)	intron (NM_021623, intron 2 of 11)	21154	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
172690	chr4	2758571	2759130	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-2514	NM_024309	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
108571	chr18	75014351	75014700	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	190988	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
52753	chr12	56651051	56651930	+	0	NA	Intergenic	AluY|SINE|Alu	-5506	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
122572	chr19	49675701	49678850	+	0	NA	promoter-TSS (NM_198318)	promoter-TSS (NM_198318)	4	NM_001207042	3276		NM_001536	ENSG00000126457	PRMT1	ANM1|HCP1|HRMT1L2|IR1B4	protein arginine methyltransferase 1	protein-coding
167920	chr3	136174621	136175080	+	0	NA	intron (NM_018133, intron 1 of 1)	intron (NM_018133, intron 1 of 1)	19618	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
158998	chr3	10334451	10334750	+	0	NA	intron (NM_001330611, intron 20 of 21)	intron (NM_001330611, intron 20 of 21)	4371	NR_036084	100422933		NR_036084	ENSG00000264534	MIR378B	-	microRNA 378b	ncRNA
84034	chr16	29516671	29516930	+	0	NA	Intergenic	Intergenic	-10926	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
226311	chr9	68931801	68932030	+	0	NA	intron (NM_001278253, intron 11 of 13)	intron (NM_001278253, intron 11 of 13)	43926	NR_110647	101927069		NR_110647		LOC101927069	-	uncharacterized LOC101927069	ncRNA
118918	chr19	38730671	38731500	+	0	NA	3' UTR (NM_001322033, exon 21 of 21)	3' UTR (NM_001322033, exon 21 of 21)	13389	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
199887	chr6	127824171	127824780	+	0	NA	intron (NM_001010923, intron 3 of 5).2	intron (NM_001010923, intron 3 of 5).2	30713	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
114058	chr19	11050421	11050930	+	0	NA	intron (NR_164683, intron 31 of 35)	intron (NR_164683, intron 31 of 35)	-38788	NM_001195799	3949		NM_000527	ENSG00000130164	LDLR	FH|FHC|FHCL1|LDLCQ2	low density lipoprotein receptor	protein-coding
97636	chr17	44190571	44191150	+	0	NA	TTS (NM_001382312)	TTS (NM_001382312)	3657	NM_001353175	79089		NM_024107	ENSG00000168591	TMUB2	FP2653	transmembrane and ubiquitin like domain containing 2	protein-coding
11881	chr1	93155101	93155650	+	0	NA	intron (NR_030761, intron 4 of 4)	intron (NR_030761, intron 4 of 4)	25038	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
15889	chr1	151537271	151537430	+	0	NA	3' UTR (NM_020770, exon 21 of 21)	3' UTR (NM_020770, exon 21 of 21)	-2959	NM_001126337	7286		NM_020127	ENSG00000143367	TUFT1	WHSF	tuftelin 1	protein-coding
12316	chr1	100941501	100941700	+	0	NA	intron (NM_133496, intron 8 of 10)	intron (NM_133496, intron 8 of 10)	45510	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
115202	chr19	14474201	14474650	+	0	NA	intron (NM_000955, intron 1 of 2)	intron (NM_000955, intron 1 of 2)	929	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
157353	chr22	44683021	44683800	+	0	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	6325	NM_001198721	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
211524	chr7	105335701	105336100	+	0	NA	intron (NM_001350742, intron 2 of 16)	AluSp|SINE|Alu	-37121	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
143830	chr20	32505601	32506000	+	0	NA	intron (NM_001256798, intron 4 of 10)	L1MB4|LINE|L1	-4159	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
186592	chr5	138506951	138507400	+	0	NA	non-coding (NR_157090, exon 10 of 10)	non-coding (NR_157090, exon 10 of 10)	34536	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
124338	chr19	58304721	58306180	+	0	NA	promoter-TSS (NR_144445)	promoter-TSS (NR_144445)	76	NR_144445	105372481		NM_001396080	ENSG00000142396	ERVK3-1	-	endogenous retrovirus group K3 member 1	protein-coding
171413	chr3	196212701	196213480	+	0	NA	Intergenic	L1MB5|LINE|L1	-1690	NR_135618	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
60179	chr13	40219971	40220530	+	0	NA	intron (NR_033877, intron 1 of 5)	L2c|LINE|L2	252	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
225564	chr9	35916651	35916950	+	0	NA	Intergenic	AluSq|SINE|Alu	7310	NM_001348107	158376		NM_001348107	ENSG00000235387	SPAAR	LINC00961|SPAR	small regulatory polypeptide of amino acid response	protein-coding
192397	chr6	24779321	24779780	+	0	NA	intron (NM_015895, intron 2 of 6)	intron (NM_015895, intron 2 of 6)	4137	NM_001251991	51053		NM_015895	ENSG00000112312	GMNN	Gem|MGORS6	geminin DNA replication inhibitor	protein-coding
11188	chr1	87449101	87449920	+	0	NA	Intergenic	Intergenic	-77855	NR_038324	100505768		NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
221899	chr8	128626851	128626950	+	0	NA	Intergenic	Intergenic	-62221	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
111988	chr19	4913021	4913280	+	0	NA	intron (NM_013282, intron 1 of 15)	intron (NM_013282, intron 1 of 15)	2783	NM_013282	29128		NM_013282	ENSG00000276043	UHRF1	ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95	ubiquitin like with PHD and ring finger domains 1	protein-coding
204627	chr7	5388571	5389130	+	0	NA	exon (NM_001080495, exon 5 of 30)	exon (NM_001080495, exon 5 of 30)	34696	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
134629	chr2	144419521	144419780	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-86581	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
6350	chr1	27771601	27772090	+	0	NA	Intergenic	AluJb|SINE|Alu	-1374	NM_177424	23673		NM_177424	ENSG00000117758	STX12	STX13|STX14	syntaxin 12	protein-coding
76751	chr15	76553601	76553800	+	0	NA	intron (NR_148227, intron 23 of 32)	L1PA15|LINE|L1	-32947	NR_037464	100500855		NR_037464	ENSG00000266449	MIR3713	-	microRNA 3713	ncRNA
153831	chr22	29881851	29881950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1269	NM_153050	8897		NM_021090	ENSG00000100330	MTMR3	FYVE-DSP1|ZFYVE10	myotubularin related protein 3	protein-coding
42715	chr11	72679821	72681100	+	0	NA	Intergenic	Intergenic	-6038	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
90287	chr17	1025221	1026230	+	0	NA	intron (NM_001282149, intron 11 of 17).3	L2a|LINE|L2	-3166	NR_036148	100422835		NR_036148	ENSG00000264429	MIR3183	mir-3183	microRNA 3183	ncRNA
178483	chr4	148447501	148448200	+	0	NA	Intergenic	Intergenic	-3152	NM_001354819	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
68130	chr14	75521871	75523030	+	0	NA	promoter-TSS (NM_006399)	promoter-TSS (NM_006399)	-19	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
113596	chr19	10284121	10284780	+	0	NA	exon (NM_000201, exon 5 of 7)	exon (NM_000201, exon 5 of 7)	-2505	NM_001039132	3386		NM_001544	ENSG00000105371	ICAM4	CD242|LW	intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	protein-coding
153516	chr22	26516601	26516800	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	4168	NR_144529	100507599		NR_144529	ENSG00000261188	TFIP11-DT	-	TFIP11 divergent transcript	ncRNA
175408	chr4	70863421	70863680	+	0	NA	Intergenic	Intergenic	-23660	NM_002092	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
42674	chr11	72591721	72592530	+	0	NA	intron (NM_001243784, intron 6 of 30)	intron (NM_001243784, intron 6 of 30)	21469	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
64694	chr14	32938171	32939130	+	0	NA	promoter-TSS (NM_001164749)	promoter-TSS (NM_001164749)	-229	NM_173159	64067		NM_022123	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
112176	chr19	5659751	5660450	+	0	NA	intron (NM_001320571, intron 12 of 18)	intron (NM_001320571, intron 12 of 18)	20138	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
48092	chr12	7346651	7346750	+	0	NA	Intergenic	LTR33B|LTR|ERVL	42368	NM_001080454	341392		NM_001080454	ENSG00000215009	ACSM4	-	acyl-CoA synthetase medium chain family member 4	protein-coding
84947	chr16	31356671	31357230	+	0	NA	intron (NM_000887, intron 3 of 29)	intron (NM_000887, intron 3 of 29)	1774	NM_000887	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
233738	chrX	1378851	1378950	+	0	NA	intron (NM_001267713, intron 8 of 9).2	AluSx1|SINE|Alu	13213	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
79816	chr16	1416921	1417830	+	0	NA	Intergenic	AluY|SINE|Alu	-2671	NM_001037125	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
235002	chrX	39854371	39856330	+	0	NA	Intergenic	MIRb|SINE|MIR	17789	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
178090	chr4	140231471	140231630	+	0	NA	Intergenic	Intergenic	-25758	NM_032547	60592		NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding
60719	chr13	44195371	44195730	+	0	NA	TTS (NR_107046)	TTS (NR_107046)	650	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
212670	chr7	129607421	129608600	+	0	NA	Intergenic	Intergenic	-3710	NM_001293163	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
170318	chr3	184356571	184356730	+	0	NA	intron (NM_004366, intron 10 of 23)	AluSp|SINE|Alu	4955	NM_001171089	1181		NM_004366	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|FHA2|FHII|HALD2|LKPAT|clC-2	chloride voltage-gated channel 2	protein-coding
39589	chr11	61292571	61292730	+	0	NA	intron (NM_152718, intron 1 of 19)	intron (NM_152718, intron 1 of 19)	2666	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
49517	chr12	25383871	25384030	+	0	NA	Intergenic	AluJb|SINE|Alu	-133021	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
64408	chr14	24174851	24174950	+	0	NA	intron (NM_001048205, intron 5 of 18).2	L2c|LINE|L2	2820	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
234258	chrX	13131601	13132200	+	0	NA	Intergenic	Intergenic	-87280	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
64160	chr14	22914771	22915350	+	0	NA	intron (NM_001352764, intron 1 of 14)	intron (NM_001352764, intron 1 of 14)	4089	NM_001352765	55147		NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding
138270	chr2	203535001	203536000	+	0	NA	promoter-TSS (NM_213589)	promoter-TSS (NM_213589)	-199	NM_213589	65059		NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
204771	chr7	5606951	5607250	+	0	NA	TTS (NM_003088)	TTS (NM_003088)	14284	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
153385	chr22	24560751	24561050	+	0	NA	intron (NR_103819, intron 2 of 2)	AluSx|SINE|Alu	4901	NM_004175	6634		NM_004175	ENSG00000100028	SNRPD3	SMD3|Sm-D3	small nuclear ribonucleoprotein D3 polypeptide	protein-coding
123049	chr19	51325421	51326080	+	0	NA	intron (NM_001101372, intron 4 of 7)	intron (NM_001101372, intron 4 of 7)	13902	NM_001101372	402665		NM_001101372	ENSG00000142549	IGLON5	-	IgLON family member 5	protein-coding
10213	chr1	62434021	62434280	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-2154	NM_001017415	7398		NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
58424	chr12	131924051	131924150	+	0	NA	TTS (NM_003565)	TTS (NM_003565)	-5176	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
158862	chr3	9843271	9844980	+	0	NA	promoter-TSS (NM_001351738)	promoter-TSS (NM_001351738)	-66	NM_001351737	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
88064	chr16	81465501	81466130	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	20645	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
9293	chr1	46442151	46443180	+	0	NA	intron (NR_045483, intron 7 of 8)	MIRb|SINE|MIR	7039	NR_121680	101929651		NR_121680	ENSG00000224863	LINC01398	-	long intergenic non-protein coding RNA 1398	ncRNA
7131	chr1	32197851	32197950	+	0	NA	3' UTR (NM_001376857, exon 10 of 10)	3' UTR (NM_001376857, exon 10 of 10)	-2695	NM_001301011	79140		NM_024296	ENSG00000160050	CCDC28B	-	coiled-coil domain containing 28B	protein-coding
123192	chr19	52539001	52539580	+	0	NA	intron (NM_001039886, intron 2 of 4)	AluSg7|SINE|Alu	11581	NM_001321424	388558		NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
64195	chr14	23011951	23012750	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2207	NM_001282968	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
42175	chr11	67884221	67885580	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-79564	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
18656	chr1	166989051	166989230	+	0	NA	promoter-TSS (NM_032858)	promoter-TSS (NM_032858)	51	NM_001286377	84944		NM_032858	ENSG00000143194	MAEL	CT128|SPATA35	maelstrom spermatogenic transposon silencer	protein-coding
44240	chr11	96560921	96561480	+	0	NA	Intergenic	L1PA3|LINE|L1	52775	NR_135097	105369443		NR_135097	ENSG00000256684	LINC02737	-	long intergenic non-protein coding RNA 2737	ncRNA
160415	chr3	28264451	28264550	+	0	NA	intron (NM_001331189, intron 3 of 4)	intron (NM_001331189, intron 3 of 4)	22881	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
179183	chr4	173257801	173258030	+	0	NA	intron (NM_001375601, intron 2 of 8)	intron (NM_001375601, intron 2 of 8)	-10245	NR_036093	100422849		NR_036093	ENSG00000221296	MIR548T	-	microRNA 548t	ncRNA
80047	chr16	1964031	1966230	+	0	NA	promoter-TSS (NR_003020)	promoter-TSS (NR_003020)	-54	NR_003020	677844		NR_003020	ENSG00000273587	SNORA78	ACA64	small nucleolar RNA, H/ACA box 78	snoRNA
223942	chr9	893901	894250	+	0	NA	exon (NM_021951, exon 3 of 5)	exon (NM_021951, exon 3 of 5)	50786	NM_001363767	1761		NM_021951	ENSG00000137090	DMRT1	CT154|DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
115028	chr19	14090171	14092530	+	0	NA	promoter-TSS (NM_138352)	promoter-TSS (NM_138352)	-599	NM_138352	90378		NM_138352	ENSG00000141858	SAMD1	-	sterile alpha motif domain containing 1	protein-coding
76609	chr15	75406551	75406650	+	0	NA	intron (NM_001145358, intron 9 of 20)	AluYe5|SINE|Alu	-37973	NM_001256496	4123		NM_006715	ENSG00000140400	MAN2C1	CDDG2|MAN6A8|MANA|MANA1	mannosidase alpha class 2C member 1	protein-coding
23703	chr1	231625801	231627000	+	0	NA	promoter-TSS (NM_001164554)	promoter-TSS (NM_001164554)	-390	NM_001164542	27185		NM_018662	ENSG00000162946	DISC1	C1orf136|SCZD9	DISC1 scaffold protein	protein-coding
103435	chr17	78259951	78260550	+	0	NA	Intergenic	AluJo|SINE|Alu	11934	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
121068	chr19	45869251	45869430	+	0	NA	intron (NM_004497, intron 1 of 1)	MIR|SINE|MIR	5014	NM_004497	3171		NM_004497	ENSG00000170608	FOXA3	FKHH3|HNF3G|TCF3G	forkhead box A3	protein-coding
205907	chr7	25216671	25217030	+	0	NA	Intergenic	Intergenic	11636	NM_022150	64111		NM_022150	ENSG00000105954	NPVF	C7orf9|RFRP	neuropeptide VF precursor	protein-coding
135909	chr2	171432001	171432650	+	0	NA	intron (NM_001321157, intron 1 of 10)	intron (NM_001321157, intron 1 of 10)	1665	NM_001321155	79828		NM_024770	ENSG00000123600	METTL8	TIP	methyltransferase 8, tRNA N3-cytidine	protein-coding
33091	chr10	110908651	110909680	+	0	NA	intron (NM_001195304, intron 2 of 4)	intron (NM_001195304, intron 2 of 4)	9771	NM_001195306	92482		NM_001195304	ENSG00000214413	BBIP1	BBIP10|BBS18|NCRNA00081|bA348N5.3	BBSome interacting protein 1	protein-coding
55635	chr12	107091721	107092500	+	0	NA	intron (NM_004075, intron 1 of 12)	intron (NM_004075, intron 1 of 12)	1439	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
101529	chr17	67856451	67857250	+	0	NA	intron (NM_182641, intron 2 of 27)	HAL1|LINE|L1	31347	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
231527	chr9	131428571	131428730	+	0	NA	intron (NM_013318, intron 1 of 31)	AluSx|SINE|Alu	34564	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
196298	chr6	43015371	43015930	+	0	NA	intron (NM_057161, intron 1 of 10)	AluSq10|SINE|Alu	1236	NM_001318943	4201		NM_014623	ENSG00000124733	MEA1	HYS|MEA	male-enhanced antigen 1	protein-coding
187012	chr5	139757151	139757600	+	0	NA	Intergenic	Intergenic	-11152	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
163993	chr3	53156251	53157430	+	0	NA	Intergenic	Intergenic	-4369	NM_006254	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
160688	chr3	32297501	32297950	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	59045	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
129730	chr2	70905851	70906630	+	0	NA	intron (NM_012476, intron 1 of 2)	intron (NM_012476, intron 1 of 2)	5664	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
126533	chr2	28564101	28564300	+	0	NA	intron (NM_153021, intron 18 of 57)	AluJr|SINE|Alu	-2157	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
65420	chr14	50854571	50854730	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-17403	NM_001206673	145447		NM_181533	ENSG00000131969	ABHD12B	BEM46L3|C14orf29|c14_5314	abhydrolase domain containing 12B	protein-coding
135659	chr2	168450361	168451150	+	0	NA	Intergenic	AluSg|SINE|Alu	-5517	NM_203463	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
205657	chr7	22852401	22852600	+	0	NA	Intergenic	Intergenic	-1740	NR_146320	109729180		NR_146320	ENSG00000228649	SNHG26	-	small nucleolar RNA host gene 26	ncRNA
139662	chr2	226839071	226839530	+	0	NA	intron (NM_001349072, intron 2 of 7)	(TATATG)n|Simple_repeat|Simple_repeat	3246	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
213295	chr7	134995071	134996230	+	0	NA	TTS (NM_001367818)	TTS (NM_001367818)	9142	NM_001345851	340351		NM_178563	ENSG00000146856	AGBL3	CCP3	AGBL carboxypeptidase 3	protein-coding
82421	chr16	16297301	16298000	+	0	NA	Intergenic	Intergenic	-2509	NR_036145	100423006		NR_036145	ENSG00000266454	MIR3179-3	-	microRNA 3179-3	ncRNA
52061	chr12	54028921	54029200	+	0	NA	intron (NM_153693, intron 2 of 2)	intron (NM_153693, intron 2 of 2)	620	NM_004503	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
162419	chr3	48302901	48303100	+	0	NA	Intergenic	Intergenic	-1315	NM_001308435	10201		NM_005793	ENSG00000172113	NME6	IPIA-ALPHA|NDK 6|NM23-H6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding
237874	chrX	130539771	130539950	+	0	NA	Intergenic	Intergenic	44919	NR_027141	55855		NM_018472		DENND10P1	FAM45B|FAM45BP|HT011	DENND10 pseudogene 1	pseudo
177436	chr4	112604571	112604930	+	0	NA	intron (NM_018392, intron 9 of 27)	intron (NM_018392, intron 9 of 27)	32159	NM_018392	55345		NM_018392	ENSG00000138658	ZGRF1	C4orf21	zinc finger GRF-type containing 1	protein-coding
200746	chr6	137792721	137793180	+	0	NA	Intergenic	Intergenic	-53913	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
147554	chr20	60011701	60012100	+	0	NA	intron (NM_177980, intron 17 of 17)	intron (NM_177980, intron 17 of 17)	15526	NM_021810	60437		NM_021810	ENSG00000124215	CDH26	VR20	cadherin 26	protein-coding
184148	chr5	95556301	95556500	+	0	NA	intron (NM_198150, intron 1 of 7)	LTR16A|LTR|ERVL	1299	NM_198150	153642		NM_198150	ENSG00000164291	ARSK	MPS10|TSULF	arylsulfatase family member K	protein-coding
121096	chr19	45913851	45914150	+	0	NA	3' UTR (NM_001029861, exon 1 of 1)	3' UTR (NM_001029861, exon 1 of 1)	778	NM_001029861	339345		NM_001029861	ENSG00000188425	NANOS2	NOS2|ZC2HC12B	nanos C2HC-type zinc finger 2	protein-coding
81932	chr16	11784951	11785550	+	0	NA	intron (NM_014153, intron 1 of 22)	AluJr|SINE|Alu	12008	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
6576	chr1	28749821	28750400	+	0	NA	intron (NM_016258, intron 4 of 4)	AluSq2|SINE|Alu	13170	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
172842	chr4	3227271	3227730	+	0	NA	intron (NM_002111, intron 57 of 66)	intron (NM_002111, intron 57 of 66)	-16869	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
56806	chr12	120212551	120212650	+	0	NA	non-coding (NR_038924, exon 4 of 4)	non-coding (NR_038924, exon 4 of 4)	11309	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
32036	chr10	101030571	101031700	+	0	NA	promoter-TSS (NM_001195263)	promoter-TSS (NM_001195263)	-6	NM_001195263	79955		NM_024895	ENSG00000186862	PDZD7	DFNB57|PDZK7	PDZ domain containing 7	protein-coding
191793	chr6	14144571	14145080	+	0	NA	Intergenic	Intergenic	27053	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
36430	chr11	4606701	4607030	+	0	NA	intron (NM_018073, intron 1 of 6)	intron (NM_018073, intron 1 of 6)	1366	NM_001304496	55128		NM_018073	ENSG00000167333	TRIM68	GC109|RNF137|SS-56|SS56	tripartite motif containing 68	protein-coding
231845	chr9	132768851	132769600	+	0	NA	intron (NM_001371771, intron 11 of 12)	MIR3|SINE|MIR	98761	NM_012204	9329		NM_012204	ENSG00000125484	GTF3C4	KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA	general transcription factor IIIC subunit 4	protein-coding
165817	chr3	105824301	105824880	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	43001	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
196266	chr6	42933101	42933450	+	0	NA	intron (NR_134881, intron 2 of 7)	L2c|LINE|L2	3795	NR_134891	107080644		NM_001318856		CNPY3-GNMT	-	CNPY3-GNMT readthrough	protein-coding
226667	chr9	75021671	75022030	+	0	NA	intron (NM_152420, intron 1 of 7)	AluJr|SINE|Alu	5301	NM_001320497	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
66267	chr14	61367001	61367830	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	45972	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
231370	chr9	130666551	130667400	+	0	NA	intron (NM_021619, intron 2 of 4)	CpG-28907	2381	NM_021619	59335		NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding
76063	chr15	72358801	72359300	+	0	NA	intron (NM_001318825, intron 1 of 13)	intron (NM_001318825, intron 1 of 13)	16964	NR_134869	3073		NM_000520	ENSG00000213614	HEXA	TSD	hexosaminidase subunit alpha	protein-coding
229714	chr9	124851801	124852230	+	0	NA	Intergenic	Intergenic	-1402	NM_001276374	401551		NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
91985	chr17	7427701	7428130	+	0	NA	promoter-TSS (NM_001364672)	promoter-TSS (NM_001364672)	-942	NM_001364672	107983988		NM_001364672	ENSG00000283439	SPEM3	-	SPEM family member 3	protein-coding
70361	chr14	101879951	101880050	+	0	NA	intron (NM_178587, intron 2 of 11)	intron (NM_178587, intron 2 of 11)	70137	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
116559	chr19	18227501	18228150	+	0	NA	intron (NM_001330172, intron 2 of 15)	intron (NM_001330172, intron 2 of 15)	-1387	NM_001369701	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
223024	chr8	143316671	143317030	+	0	NA	intron (NM_052963, intron 10 of 13)	intron (NM_052963, intron 10 of 13)	18030	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
207462	chr7	44609971	44610130	+	0	NA	intron (NM_001363523, intron 1 of 23)	AluJo|SINE|Alu	3423	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
210482	chr7	100160301	100160500	+	0	NA	exon (NM_024637, exon 4 of 4)	exon (NM_024637, exon 4 of 4)	-1677	NM_018275	55262		NM_018275	ENSG00000146826	TRAPPC14	C7orf43|MAP11|MCPH25	trafficking protein particle complex subunit 14	protein-coding
138543	chr2	207533851	207534980	+	0	NA	intron (NR_163946, intron 1 of 8)	AluSg|SINE|Alu	4453	NM_134442	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123343	chr19	53863301	53863700	+	0	NA	Intergenic	Intergenic	-2128	NM_001290193	91663		NM_138373	ENSG00000179820	MYADM	SB135	myeloid associated differentiation marker	protein-coding
59619	chr13	27953621	27954530	+	0	NA	non-coding (NR_135254, exon 1 of 1)	non-coding (NR_135254, exon 1 of 1)	549	NR_135254	100132234		NR_135254	ENSG00000260704	LINC00543	-	long intergenic non-protein coding RNA 543	ncRNA
86418	chr16	66867551	66868650	+	0	NA	Intergenic	Intergenic	-12415	NM_001329931	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
37101	chr11	13280971	13281480	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	3435	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
201544	chr6	149210421	149210680	+	0	NA	Intergenic	Intergenic	-7374	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
2378	chr1	9416421	9416880	+	0	NA	Intergenic	Intergenic	12266	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
15676	chr1	150953151	150953450	+	0	NA	intron (NM_012432, intron 14 of 21)	AluSq2|SINE|Alu	21535	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
189844	chr5	177109951	177110050	+	0	NA	Intergenic	L2b|LINE|L2	20450	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
14649	chr1	145607621	145608800	+	0	NA	promoter-TSS (NR_104217)	promoter-TSS (NR_104217)	222	NM_001097612	653519		NM_001097612	ENSG00000117262	GPR89A	GPHR|GPR89|GPR89B|SH120|UNQ192	G protein-coupled receptor 89A	protein-coding
123227	chr19	52896571	52898080	+	0	NA	intron (NM_001351775, intron 1 of 5)	CpG	310	NM_001351774	162967		NM_207333	ENSG00000182986	ZNF320	ZFPL	zinc finger protein 320	protein-coding
193120	chr6	28977171	28977780	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-7274	NR_135289	414761		NR_135289		HCG15	HCG16	HLA complex group 15	ncRNA
37808	chr11	32960301	32960800	+	0	NA	intron (NM_001076786, intron 8 of 12)	AluSq2|SINE|Alu	-55328	NM_001077242	91614		NM_139160	ENSG00000121690	DEPDC7	TR2|dJ85M6.4	DEP domain containing 7	protein-coding
108456	chr18	70454701	70455000	+	0	NA	Intergenic	Intergenic	-70259	NR_110764	101060542		NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA
195880	chr6	41638071	41639100	+	0	NA	5' UTR (NM_005586, exon 1 of 5)	5' UTR (NM_005586, exon 1 of 5)	117	NM_005586	4188		NM_005586	ENSG00000112559	MDFI	I-MF|I-mfa	MyoD family inhibitor	protein-coding
227484	chr9	91162701	91163500	+	0	NA	intron (NR_135306, intron 2 of 2)	intron (NR_135306, intron 2 of 2)	44038	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
207575	chr7	44948771	44948930	+	0	NA	Intergenic	(TCTAAT)n|Simple_repeat|Simple_repeat	30165	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
13070	chr1	111501051	111501550	+	0	NA	intron (NM_001302678, intron 1 of 1)	intron (NM_001302678, intron 1 of 1)	2333	NM_001302679	140		NM_000677	ENSG00000282608	ADORA3	A3AR	adenosine A3 receptor	protein-coding
229613	chr9	123931601	123931900	+	0	NA	Intergenic	Intergenic	-1612	NM_001352965	57706		NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
46147	chr11	123050751	123051130	+	0	NA	Intergenic	AluSz6|SINE|Alu	7216	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
177897	chr4	128919021	128919480	+	0	NA	intron (NM_144643, intron 18 of 20)	L1PA15|LINE|L1	107406	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
45314	chr11	118158371	118158530	+	0	NA	Intergenic	MIRb|SINE|MIR	-5627	NM_174934	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
214647	chr7	150753801	150754530	+	0	NA	Intergenic	(AAGG)n|Simple_repeat|Simple_repeat	16817	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
191694	chr6	13617201	13617600	+	0	NA	intron (NM_016167, intron 3 of 7)	intron (NM_016167, intron 3 of 7)	2065	NM_016167	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
28489	chr10	49941251	49942450	+	0	NA	promoter-TSS (NM_001290117)	promoter-TSS (NM_001290117)	177	NR_136754	8505		NM_003631	ENSG00000227345	PARG	PARG99	poly(ADP-ribose) glycohydrolase	protein-coding
220242	chr8	97259151	97259830	+	0	NA	intron (NR_125390, intron 2 of 2)	intron (NR_125390, intron 2 of 2)	18438	NM_033512	85453		NM_033512	ENSG00000180543	TSPYL5	-	TSPY like 5	protein-coding
46349	chr11	125863321	125863800	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-20054	NM_145014	219844		NM_145014	ENSG00000198331	HYLS1	HLS	HYLS1 centriolar and ciliogenesis associated	protein-coding
199769	chr6	125918501	125919320	+	0	NA	promoter-TSS (NM_001199622)	promoter-TSS (NM_001199622)	-345	NM_001199622	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
193674	chr6	31020271	31020430	+	0	NA	intron (NM_001322469, intron 2 of 5)	L1MEc|LINE|L1	14398	NM_001198815	100507679		NM_001198815	ENSG00000261272	MUC22	PBMUCL1	mucin 22	protein-coding
142653	chr20	5825851	5826150	+	0	NA	intron (NM_001303478, intron 3 of 3)	intron (NM_001303478, intron 3 of 3)	75599	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
35184	chr11	787451	788400	+	0	NA	3' UTR (NM_016564, exon 2 of 2)	3' UTR (NM_016564, exon 2 of 2)	2165	NM_016564	51286		NM_016564	ENSG00000184524	CEND1	BM88	cell cycle exit and neuronal differentiation 1	protein-coding
122888	chr19	50516051	50516150	+	0	NA	TTS (NM_001080457)	TTS (NM_001080457)	-1416	NM_001024656	554235		NM_001024656	ENSG00000204653	ASPDH	-	aspartate dehydrogenase domain containing	protein-coding
212999	chr7	131000101	131000500	+	0	NA	intron (NR_109855, intron 2 of 4)	LTR54|LTR|ERV1	86836	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
86850	chr16	67931101	67931700	+	0	NA	intron (NM_001907, intron 1 of 6)	intron (NM_001907, intron 1 of 6)	462	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
12298	chr1	100895501	100896400	+	0	NA	promoter-TSS (NM_001261442)	promoter-TSS (NM_001261442)	-140	NM_133496	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
226305	chr9	68705871	68706030	+	0	NA	promoter-TSS (NM_001376041)	promoter-TSS (NM_001376041)	-30	NM_001376039	8395		NM_003558	ENSG00000107242	PIP5K1B	MSS4|STM7	phosphatidylinositol-4-phosphate 5-kinase type 1 beta	protein-coding
61500	chr13	52652121	52653580	+	0	NA	promoter-TSS (NM_001320831)	promoter-TSS (NM_001320831)	14	NM_001130912	10910		NM_006704	ENSG00000165416	SUGT1	SGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein-coding
175681	chr4	77014301	77014700	+	0	NA	intron (NM_018243, intron 4 of 9)	intron (NM_018243, intron 4 of 9)	60410	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
139916	chr2	230748201	230748400	+	0	NA	intron (NM_001130849, intron 1 of 8)	L1MC5a|LINE|L1	34752	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
169589	chr3	170884071	170884230	+	0	NA	Intergenic	L1PA2|LINE|L1	-13955	NM_001320451	200916		NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22 like 1	protein-coding
29005	chr10	63436351	63436450	+	0	NA	intron (NM_001322258, intron 1 of 24)	intron (NM_001322258, intron 1 of 24)	5825	NR_134312	105378330		NR_134312		JMJD1C-AS2	-	JMJD1C antisense RNA 2	ncRNA
96688	chr17	41325021	41325400	+	0	NA	Intergenic	Intergenic	-9500	NM_031964	83902		NM_031964	ENSG00000186860	KRTAP17-1	KAP17.1|KRTAP16.1|KRTAP17.1	keratin associated protein 17-1	protein-coding
8711	chr1	42334351	42335850	+	0	NA	promoter-TSS (NM_001198851)	promoter-TSS (NM_001198851)	115	NM_001198852	22887		NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
160293	chr3	27364271	27364430	+	0	NA	intron (NM_199347, intron 2 of 24)	(TG)n|Simple_repeat|Simple_repeat	5033	NM_199347	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
196683	chr6	44701271	44701430	+	0	NA	Intergenic	Intergenic	-149469	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
129398	chr2	68831871	68832680	+	0	NA	Intergenic	Intergenic	39122	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
177391	chr4	112222751	112223500	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8662	NM_018569	55435		NM_018569	ENSG00000138660	AP1AR	2C18|C4orf16|GBAR|PRO0971|gamma-BAR	adaptor related protein complex 1 associated regulatory protein	protein-coding
93222	chr17	17833221	17833480	+	0	NA	intron (NM_001005291, intron 1 of 19)	AluY|SINE|Alu	3636	NM_001005291	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
67445	chr14	70666121	70666380	+	0	NA	intron (NM_015351, intron 1 of 2)	intron (NM_015351, intron 1 of 2)	24334	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
142903	chr20	17970921	17971180	+	0	NA	intron (NM_001310339, intron 2 of 2)	intron (NM_001310339, intron 2 of 2)	2032	NM_001310339	92667		NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
111451	chr19	3821401	3822750	+	0	NA	intron (NM_015174, intron 9 of 18)	CpG	-20276	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
33321	chr10	115031351	115031450	+	0	NA	Intergenic	AluSq10|SINE|Alu	36743	NR_120677	102724589		NR_120677	ENSG00000236799	LINC02626	-	long intergenic non-protein coding RNA 2626	ncRNA
121404	chr19	46958101	46958500	+	0	NA	intron (NM_004491, intron 3 of 6)	AluYm1|SINE|Alu	-61537	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
117047	chr19	18939351	18939450	+	0	NA	promoter-TSS (NR_134912)	promoter-TSS (NR_134912)	235	NR_027297	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
154228	chr22	31536921	31537880	+	0	NA	intron (NM_001007467, intron 4 of 32)	intron (NM_001007467, intron 4 of 32)	40864	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
202775	chr6	159063721	159064030	+	0	NA	Intergenic	Intergenic	-18723	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
169660	chr3	171494301	171495350	+	0	NA	Intergenic	Intergenic	-34417	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
20597	chr1	198763171	198763750	+	0	NA	Intergenic	Intergenic	95522	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
205878	chr7	25098121	25099030	+	0	NA	Intergenic	Intergenic	26685	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
48322	chr12	9024671	9026130	+	0	NA	Intergenic	AluSz|SINE|Alu	35775	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
185543	chr5	131354951	131355500	+	0	NA	intron (NM_001375633, intron 2 of 5)	MIRc|SINE|MIR	91172	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
151557	chr21	46554771	46555400	+	0	NA	intron (NM_001353942, intron 28 of 37)	intron (NM_001353942, intron 28 of 37)	49997	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
7220	chr1	32311801	32312380	+	0	NA	intron (NM_004964, intron 2 of 13)	FLAM_A|SINE|Alu	20007	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
194486	chr6	33249001	33250280	+	0	NA	TTS (NM_022553)	TTS (NM_022553)	104	NR_044997	414765		NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25	ncRNA
142754	chr20	10475301	10475500	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	40095	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
193773	chr6	31362601	31363230	+	0	NA	Intergenic	AluJr|SINE|Alu	-5736	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
217244	chr8	27274381	27275080	+	0	NA	Intergenic	Intergenic	-16326	NM_001283053	81551		NM_030795	ENSG00000015592	STMN4	RB3	stathmin 4	protein-coding
148425	chr20	63961521	63961930	+	0	NA	intron (NM_020713, intron 15 of 16)	intron (NM_020713, intron 15 of 16)	-5309	NM_001353477	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
41038	chr11	65451501	65452230	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3421	NR_160548	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
215936	chr8	8330451	8331580	+	0	NA	intron (NR_163138, intron 5 of 6)	intron (NR_163138, intron 5 of 6)	55229	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
233390	chr9	137545701	137546500	+	0	NA	intron (NM_001098537, intron 4 of 34)	LTR13|LTR|ERVK	4302	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
228590	chr9	104967971	104969230	+	0	NA	Intergenic	Intergenic	-40445	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
152012	chr22	19421051	19421730	+	0	NA	intron (NM_003325, intron 1 of 24)	intron (NM_003325, intron 1 of 24)	10343	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
112092	chr19	5562201	5562600	+	0	NA	intron (NR_027064, intron 1 of 2)	intron (NR_027064, intron 1 of 2)	5634	NR_027064								
141628	chr2	241690201	241690400	+	0	NA	5' UTR (NM_001330161, exon 2 of 8)	5' UTR (NM_001330161, exon 2 of 8)	3280	NM_001330161	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
137826	chr2	200463071	200463580	+	0	NA	intron (NM_001282743, intron 8 of 11)	L2a|LINE|L2	46743	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
1936	chr1	6493051	6493750	+	0	NA	intron (NM_198681, intron 2 of 21)	intron (NM_198681, intron 2 of 21)	-1733	NM_020631	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
40736	chr11	64823171	64823330	+	0	NA	3' UTR (NM_017525, exon 37 of 37)	3' UTR (NM_017525, exon 37 of 37)	-11956	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
180423	chr5	10423951	10424500	+	0	NA	intron (NM_001270660, intron 22 of 24)	MER34B|LTR|ERV1	17626	NR_102746	100505845		NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
166564	chr3	115699171	115699580	+	0	NA	intron (NM_002045, intron 2 of 2)	intron (NM_002045, intron 2 of 2)	75865	NM_001130064	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
10335	chr1	64912171	64912530	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	54199	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
132478	chr2	105917501	105917900	+	0	NA	Intergenic	LTR78|LTR|ERV1	65853	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
123076	chr19	51380721	51381230	+	0	NA	intron (NM_001161748, intron 3 of 4)	MER21C|LTR|ERVL	6999	NM_030657	3982		NM_030657	ENSG00000105370	LIM2	CTRCT19|MP17|MP19	lens intrinsic membrane protein 2	protein-coding
9962	chr1	54799051	54799780	+	0	NA	intron (NM_017904, intron 1 of 5)	MIR3|SINE|MIR	1908	NM_017904	55001		NM_017904	ENSG00000006555	TTC22	-	tetratricopeptide repeat domain 22	protein-coding
23226	chr1	227739601	227740130	+	0	NA	intron (NM_001323931, intron 2 of 5)	intron (NM_001323931, intron 2 of 5)	4170	NM_001323934	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
95447	chr17	36142971	36143130	+	0	NA	Intergenic	Intergenic	33528	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
165311	chr3	87228621	87228880	+	0	NA	intron (NM_001244644, intron 1 of 4)	intron (NM_001244644, intron 1 of 4)	1441	NM_001244644	25978		NM_014043	ENSG00000083937	CHMP2B	ALS17|CHMP2.5|DMT1|FTDALS7|VPS2-2|VPS2B	charged multivesicular body protein 2B	protein-coding
211275	chr7	102745451	102745750	+	0	NA	intron (NR_146066, intron 1 of 11)	intron (NR_146066, intron 1 of 11)	3094	NR_146066	100133005		NR_146066		RASA4DP	-	RAS p21 protein activator 4D, pseudogene	pseudo
125785	chr2	23891501	23892380	+	0	NA	intron (NM_001354107, intron 2 of 28)	intron (NM_001354107, intron 2 of 28)	35183	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
11866	chr1	93072451	93072750	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-6635	NM_001164393	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
112149	chr19	5619901	5620100	+	0	NA	intron (NM_014649, intron 2 of 20)	intron (NM_014649, intron 2 of 20)	2776	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
196784	chr6	45663351	45664150	+	0	NA	Intergenic	CpG	241475	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
16984	chr1	155972121	155973250	+	0	NA	intron (NM_001350112, intron 1 of 21)	intron (NM_001350112, intron 1 of 21)	5490	NM_001350111	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
169948	chr3	179074471	179074860	+	0	NA	Intergenic	Intergenic	-2152	NM_001375827	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
120927	chr19	45660801	45661000	+	0	NA	Intergenic	Intergenic	-7321	NM_001308418	2696		NM_000164	ENSG00000010310	GIPR	PGQTL2	gastric inhibitory polypeptide receptor	protein-coding
185270	chr5	124651701	124652180	+	0	NA	intron (NM_001385621, intron 2 of 8)	CpG	94699	NM_001385620	57507		NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
161973	chr3	46297351	46298080	+	0	NA	Intergenic	LTR16A|LTR|ERVL	55255	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
55412	chr12	104480851	104481150	+	0	NA	intron (NM_018413, intron 1 of 2)	MIRc|SINE|MIR	24052	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
13463	chr1	114558571	114558930	+	0	NA	Intergenic	Intergenic	22865	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
6826	chr1	31009771	31010880	+	0	NA	intron (NM_014676, intron 3 of 21)	MLT1F2|LTR|ERVL-MaLR	-42088	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
63048	chr13	113106151	113106650	+	0	NA	intron (NM_001267554, intron 1 of 5)	G-rich|Low_complexity|Low_complexity	609	NM_019616	2155		NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
168272	chr3	141476021	141477100	+	0	NA	Intergenic	LTR81C|LTR|Gypsy	-10467	NM_001303246	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
155743	chr22	39170701	39171450	+	0	NA	Intergenic	Intergenic	-18395	NM_175709	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
181757	chr5	50720151	50720780	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	53051	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
97516	chr17	43952701	43953480	+	0	NA	intron (NM_004160, intron 6 of 6)	CpG	-10614	NM_002722	5539		NM_002722	ENSG00000108849	PPY	PH|PNP|PP	pancreatic polypeptide	protein-coding
93714	chr17	19506251	19506550	+	0	NA	Intergenic	AluSz|SINE|Alu	-27454	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
57969	chr12	123931221	123932140	+	0	NA	exon (NM_001372106, exon 75 of 79)	exon (NM_001372106, exon 75 of 79)	40379	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
225111	chr9	33455801	33456400	+	0	NA	Intergenic	Intergenic	-8507	NM_001318144	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
110145	chr19	1614021	1614480	+	0	NA	intron (NM_001136139, intron 17 of 19)	intron (NM_001136139, intron 17 of 19)	-8788	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
93675	chr17	19239651	19239750	+	0	NA	intron (NM_001102664, intron 1 of 7)	intron (NM_001102664, intron 1 of 7)	2323	NM_001102664	22905		NM_014964	ENSG00000072134	EPN2	EHB21	epsin 2	protein-coding
118375	chr19	35720621	35720930	+	0	NA	exon (NM_014727, exon 3 of 37)	exon (NM_014727, exon 3 of 37)	2772	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
88998	chr16	87954601	87955000	+	0	NA	intron (NM_001384920, intron 2 of 13)	intron (NM_001384920, intron 2 of 13)	3366	NM_001384935	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
146224	chr20	48799421	48800400	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	28089	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
72283	chr15	30882901	30883100	+	0	NA	Intergenic	Intergenic	-20852	NM_001146095	22909		NM_014967	ENSG00000198690	FAN1	KIAA1018|KMIN|MTMR15|hFAN1	FANCD2 and FANCI associated nuclease 1	protein-coding
121172	chr19	46427701	46427980	+	0	NA	Intergenic	Intergenic	-14276	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
118840	chr19	38620571	38620730	+	0	NA	intron (NM_013234, intron 2 of 7).2	AluSp|SINE|Alu	1462	NM_013234	27335		NM_013234	ENSG00000178982	EIF3K	ARG134|EIF3-p28|EIF3S12|HSPC029|M9|MSTP001|PLAC-24|PLAC24|PRO1474|PTD001	eukaryotic translation initiation factor 3 subunit K	protein-coding
210995	chr7	102281901	102282800	+	0	NA	intron (NM_001913, intron 21 of 22)	intron (NM_001913, intron 21 of 22)	-2791	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
62087	chr13	94551471	94551830	+	0	NA	Intergenic	Intergenic	-2244	NM_001322184	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
166105	chr3	110888951	110889400	+	0	NA	Intergenic	L1HS|LINE|L1	180784	NR_045114	100506555		NR_045114		NECTIN3-AS1	PVRL3-AS1	NECTIN3 antisense RNA 1	ncRNA
50376	chr12	47221701	47222180	+	0	NA	intron (NM_138371, intron 3 of 3)	AluJr|SINE|Alu	-5497	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
188909	chr5	160188301	160188630	+	0	NA	intron (NM_001130958, intron 1 of 6)	intron (NM_001130958, intron 1 of 6)	1084	NM_001130958	2172		NM_001445	ENSG00000170231	FABP6	I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP	fatty acid binding protein 6	protein-coding
34845	chr11	316861	317430	+	0	NA	Intergenic	MER4E1|LTR|ERV1	3105	NM_003641	8519		NM_003641	ENSG00000185885	IFITM1	9-27|CD225|DSPA2a|IFI17|LEU13	interferon induced transmembrane protein 1	protein-coding
27388	chr10	31135251	31136000	+	0	NA	Intergenic	AluJr|SINE|Alu	-52258	NR_134478	101929352		NR_134478		LINC02664	-	long intergenic non-protein coding RNA 2664	ncRNA
212124	chr7	116231601	116232530	+	0	NA	intron (NM_152829, intron 1 of 6)	intron (NM_152829, intron 1 of 6)	9112	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
76470	chr15	74861671	74862430	+	0	NA	intron (NM_001320778, intron 1 of 9)	AluSz|SINE|Alu	11315	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
213413	chr7	137937071	137937230	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	-4162	NM_001318246	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
56281	chr12	112128171	112128330	+	0	NA	intron (NM_001143906, intron 1 of 11)	AluSx1|SINE|Alu	2690	NM_006700	10906		NM_006700	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
27512	chr10	32297301	32297730	+	0	NA	intron (NR_168511, intron 2 of 13)	AluSq2|SINE|Alu	49643	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
72076	chr15	28901101	28901500	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	15326	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
82509	chr16	17463351	17463650	+	0	NA	intron (NM_022166, intron 1 of 11)	L1MA4|LINE|L1	7460	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
129366	chr2	68783951	68784350	+	0	NA	intron (NM_001166277, intron 3 of 9)	(TC)n|Simple_repeat|Simple_repeat	9240	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
199835	chr6	127747651	127747750	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	107488	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
173524	chr4	9760751	9761050	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-20734	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
200779	chr6	137874201	137875350	+	0	NA	intron (NM_006290, intron 2 of 8)	intron (NM_006290, intron 2 of 8)	-6542	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
106421	chr18	13538951	13539650	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-71814	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
130777	chr2	86841451	86841780	+	0	NA	3' UTR (NM_004931, exon 6 of 6)	3' UTR (NM_004931, exon 6 of 6)	-20210	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
117229	chr19	19419951	19420050	+	0	NA	intron (NM_001384527, intron 1 of 11)	MIRb|SINE|MIR	14325	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
188659	chr5	157247151	157247900	+	0	NA	intron (NM_005546, intron 15 of 16)	intron (NM_005546, intron 15 of 16)	-18598	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
4814	chr1	23603601	23603800	+	0	NA	Intergenic	AluSx|SINE|Alu	-23634	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
195752	chr6	40308721	40308980	+	0	NA	Intergenic	Intergenic	47156	NR_038887	401260		NM_001001705	ENSG00000226070	LINC00951	-	long intergenic non-protein coding RNA 951	ncRNA
155644	chr22	38981251	38981550	+	0	NA	promoter-TSS (NM_001270411)	promoter-TSS (NM_001270411)	-947	NM_004900	9582		NM_004900	ENSG00000179750	APOBEC3B	A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2	apolipoprotein B mRNA editing enzyme catalytic subunit 3B	protein-coding
77080	chr15	78905421	78906250	+	0	NA	Intergenic	AluSc8|SINE|Alu	32846	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
95826	chr17	38761671	38761980	+	0	NA	intron (NR_104195, intron 4 of 5).2	intron (NR_104195, intron 4 of 5).2	9084	NR_104195	5691		NM_002795	ENSG00000277791	PSMB3	HC10-II	proteasome 20S subunit beta 3	protein-coding
214668	chr7	150947251	150947350	+	0	NA	intron (NM_172057, intron 9 of 10)	intron (NM_172057, intron 9 of 10)	8504	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
186925	chr5	139612001	139612850	+	0	NA	intron (NM_003339, intron 2 of 6)	intron (NM_003339, intron 2 of 6)	-34874	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
135898	chr2	171247951	171248650	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-17007	NM_001136554	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
168129	chr3	138914921	138916650	+	0	NA	Intergenic	CpG	28235	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
120174	chr19	42253101	42254600	+	0	NA	promoter-TSS (NM_001308402)	promoter-TSS (NM_001308402)	49	NM_001308402	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
228023	chr9	95874621	95877250	+	0	NA	promoter-TSS (NR_023390)	promoter-TSS (NR_023390)	42	NR_023390	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
13599	chr1	116371301	116371780	+	0	NA	Intergenic	AluSc5|SINE|Alu	-1704	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
98803	chr17	48264301	48265000	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-29697	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
66494	chr14	61672451	61672950	+	0	NA	Intergenic	AluJb|SINE|Alu	-22813	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
67558	chr14	71324671	71325380	+	0	NA	intron (NM_001354287, intron 2 of 23)	intron (NM_001354287, intron 2 of 23)	4549	NM_015556	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
205600	chr7	21941801	21942000	+	0	NA	intron (NM_001127370, intron 1 of 10)	intron (NM_001127370, intron 1 of 10)	3999	NM_018719	55536		NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
148316	chr20	63745071	63745430	+	0	NA	3' UTR (NM_001369741, exon 5 of 5)	3' UTR (NM_001369741, exon 5 of 5)	5474	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
103370	chr17	78127001	78128100	+	0	NA	intron (NM_001375353, intron 1 of 19)	intron (NM_001375353, intron 1 of 19)	1205	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
236310	chrX	68652921	68653400	+	0	NA	intron (NM_001142503, intron 1 of 14)	(AC)n|Simple_repeat|Simple_repeat	5491	NM_014725	9754		NM_014725	ENSG00000130052	STARD8	ARHGAP38|DLC3|STARTGAP3	StAR related lipid transfer domain containing 8	protein-coding
105106	chr17	82199951	82200050	+	0	NA	intron (NM_001367828, intron 2 of 16)	LTR87|LTR|ERVL?	12842	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
103845	chr17	79702221	79702580	+	0	NA	Intergenic	Intergenic	4849	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	mir-4739	microRNA 4739	ncRNA
31418	chr10	95691201	95691800	+	0	NA	intron (NM_015631, intron 3 of 13)	intron (NM_015631, intron 3 of 13)	2427	NM_015631	26123		NM_015631	ENSG00000119977	TCTN3	C10orf61|JBTS18|OFD4|TECT3	tectonic family member 3	protein-coding
202498	chr6	158358771	158358930	+	0	NA	intron (NM_001007466, intron 1 of 12)	intron (NM_001007466, intron 1 of 12)	35868	NR_145798	109623462		NR_145798		SNORA116	-	small nucleolar RNA, H/ACA box 116	snoRNA
229155	chr9	114494951	114495400	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	8040	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
94233	chr17	28661371	28662600	+	0	NA	promoter-TSS (NM_001320755)	promoter-TSS (NM_001320755)	-79	NM_006923	6388		NM_006923	ENSG00000132581	SDF2	-	stromal cell derived factor 2	protein-coding
71228	chr14	105170921	105171780	+	0	NA	Intergenic	Intergenic	-2574	NM_145159	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
97712	chr17	44347051	44347550	+	0	NA	intron (NM_002087, intron 1 of 12)	AluSg|SINE|Alu	1998	NM_002087	2896		NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin precursor	protein-coding
205950	chr7	26112221	26112550	+	0	NA	Intergenic	Intergenic	-39813	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
182016	chr5	55356821	55357280	+	0	NA	intron (NM_015360, intron 14 of 26)	intron (NM_015360, intron 14 of 26)	49061	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
141386	chr2	240817821	240818080	+	0	NA	intron (NM_001379653, intron 1 of 46)	intron (NM_001379653, intron 1 of 46)	1327	NM_001379651	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
25993	chr10	12024651	12025030	+	0	NA	intron (NM_080599, intron 3 of 21)	AluJr|SINE|Alu	17969	NM_015542	26019		NM_015542	ENSG00000151461	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense mediated mRNA decay	protein-coding
46641	chr11	128688901	128689200	+	0	NA	intron (NM_001271012, intron 1 of 6)	MIR|SINE|MIR	-2128	NR_135072	101929538		NR_135072	ENSG00000245008	LOC101929538	-	uncharacterized LOC101929538	ncRNA
212977	chr7	130975801	130976400	+	0	NA	intron (NR_109851, intron 4 of 5)	L1M3|LINE|L1	62636	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
25822	chr10	11205301	11205900	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	40570	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
81430	chr16	8855101	8855730	+	0	NA	intron (NM_001278263, intron 3 of 3)	intron (NM_001278263, intron 3 of 3)	5946	NR_147908	100130283		NR_147908	ENSG00000140650	LOC100130283	-	uncharacterized LOC100130283	ncRNA
226648	chr9	74570971	74571130	+	0	NA	intron (NM_006914, intron 1 of 9)	intron (NM_006914, intron 1 of 9)	-44484	NM_001365023	6096		NM_006914	ENSG00000198963	RORB	EIG15|NR1F2|ROR-BETA|RORbeta|RZR-BETA|RZRB|bA133M9.1	RAR related orphan receptor B	protein-coding
51213	chr12	50589701	50590100	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	84915	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
1201	chr1	2250651	2251000	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	22506	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
117172	chr19	19348571	19348930	+	0	NA	intron (NM_015329, intron 13 of 18)	intron (NM_015329, intron 13 of 18)	27921	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
70871	chr14	103806901	103807100	+	0	NA	intron (NM_015316, intron 1 of 16)	L2a|LINE|L2	40575	NM_015316	23368		NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
121229	chr19	46636071	46637000	+	0	NA	Intergenic	Intergenic	-1853	NM_033258	94235		NM_033258	ENSG00000167414	GNG8	HG3E	G protein subunit gamma 8	protein-coding
19081	chr1	170545651	170545750	+	0	NA	TTS (NM_001146039)	TTS (NM_001146039)	-13091	NR_125958	101928650		NR_125958		GORAB-AS1	-	GORAB antisense RNA 1	ncRNA
190918	chr6	2851601	2852000	+	0	NA	Intergenic	MER21C|LTR|ERVL	2307	NR_039788	100616285		NR_039788	ENSG00000266750	MIR4645	mir-4645	microRNA 4645	ncRNA
33629	chr10	119655221	119656130	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	4295	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
115269	chr19	14547501	14547900	+	0	NA	intron (NM_001321170, intron 2 of 13)	AluJo|SINE|Alu	18106	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
184167	chr5	95760261	95761530	+	0	NA	intron (NM_014899, intron 6 of 11)	intron (NM_014899, intron 6 of 11)	-28793	NM_001349303	83890		NM_031952	ENSG00000145757	SPATA9	NYD-SP16	spermatogenesis associated 9	protein-coding
70178	chr14	100371371	100371530	+	0	NA	intron (NM_173701, intron 1 of 10)	AluSx|SINE|Alu	3897	NM_213646	7453		NM_004184	ENSG00000140105	WARS1	GAMMA-2|HMN9|HMND9|IFI53|IFP53|NEDMSBA|WARS	tryptophanyl-tRNA synthetase 1	protein-coding
41255	chr11	65830901	65831180	+	0	NA	Intergenic	Intergenic	-2923	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
128344	chr2	54838401	54838800	+	0	NA	intron (NM_001039753, intron 6 of 40)	intron (NM_001039753, intron 6 of 40)	113588	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133544	chr2	120321071	120321350	+	0	NA	Intergenic	Intergenic	-24926	NM_002193	3625		NM_002193	ENSG00000163083	INHBB	-	inhibin subunit beta B	protein-coding
167771	chr3	132881951	132882150	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-156238	NM_001136469	66000		NM_023943	ENSG00000144868	TMEM108	CT124|RTLN	transmembrane protein 108	protein-coding
27716	chr10	33476121	33476250	+	0	NA	Intergenic	AluY|SINE|Alu	-141280	NR_045259	8829		NM_003873	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
132795	chr2	110211871	110213030	+	0	NA	promoter-TSS (NM_001384134)	promoter-TSS (NM_001384134)	97	NM_001384134	205251		NM_174925	ENSG00000175701	MTLN	LEMP|LINC00116|MOXI|MPM|NCRNA00116|SMIM37|TILR	mitoregulin	protein-coding
23514	chr1	228831051	228831350	+	0	NA	Intergenic	Intergenic	95721	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
37607	chr11	20088951	20089050	+	0	NA	intron (NM_145117, intron 26 of 37)	intron (NM_145117, intron 26 of 37)	-39697	NR_046672	100874014		NR_046672	ENSG00000254453	NAV2-AS2	-	NAV2 antisense RNA 2	ncRNA
195556	chr6	37486371	37486530	+	0	NA	intron (NM_138493, intron 1 of 3)	intron (NM_138493, intron 1 of 3)	13443	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
36932	chr11	10860471	10861250	+	0	NA	intron (NR_034137, intron 1 of 2)	AluJr|SINE|Alu	2643	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
106233	chr18	11936601	11936900	+	0	NA	Intergenic	Intergenic	-28433	NR_040242	65258		NM_023075	ENSG00000154889	MPPE1	Cdc1|PGAP5	metallophosphoesterase 1	protein-coding
136280	chr2	174708821	174709730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-10525	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
164575	chr3	64021451	64022050	+	0	NA	intron (NM_014814, intron 2 of 7)	AluSq2|SINE|Alu	1722	NM_001271781	9861		NM_014814	ENSG00000163636	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	proteasome 26S subunit, non-ATPase 6	protein-coding
2603	chr1	9937021	9937280	+	0	NA	intron (NM_001316974, intron 2 of 7)	AluY|SINE|Alu	-5773	NM_001297778	64802		NM_022787	ENSG00000173614	NMNAT1	LCA9|NMNAT|PNAT1|SHILCA	nicotinamide nucleotide adenylyltransferase 1	protein-coding
38695	chr11	46595351	46596430	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-1867	NM_001300731	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
146409	chr20	49385321	49385750	+	0	NA	intron (NM_004975, intron 1 of 1)	MLT1J|LTR|ERVL-MaLR	97133	NM_004975	3745		NM_004975	ENSG00000158445	KCNB1	DEE26|DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
80451	chr16	2675151	2675450	+	0	NA	Intergenic	MIR|SINE|MIR	-1861	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
9888	chr1	54355821	54356080	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	50444	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
90797	chr17	2192301	2193150	+	0	NA	intron (NM_001256827, intron 3 of 11)	intron (NM_001256827, intron 3 of 11)	-39953	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
189434	chr5	172918321	172920080	+	0	NA	intron (NM_001031711, intron 5 of 9)	L2a|LINE|L2	4117	NR_162113	113218510		NR_162113		MIR10523	-	microRNA 10523	ncRNA
119252	chr19	39501651	39502100	+	0	NA	intron (NM_016941, intron 3 of 7)	MamRTE1|LINE|RTE-BovB	2928	NM_203486	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
219561	chr8	78615301	78615500	+	0	NA	Intergenic	Intergenic	-50689	NR_156423	51101		NM_016010	ENSG00000104427	ZC2HC1A	C8orf70|CGI-62|FAM164A	zinc finger C2HC-type containing 1A	protein-coding
109060	chr18	79900151	79900450	+	0	NA	TTS (NM_012283)	TTS (NM_012283)	36632	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
65893	chr14	55193221	55193480	+	0	NA	Intergenic	AluJr|SINE|Alu	-1765	NM_014750	9787		NM_014750	ENSG00000126787	DLGAP5	DLG7|HURP	DLG associated protein 5	protein-coding
121047	chr19	45822621	45823080	+	0	NA	intron (NM_004819, intron 20 of 26)	intron (NM_004819, intron 20 of 26)	-7542	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
216493	chr8	20223571	20224280	+	0	NA	Intergenic	Intergenic	26544	NM_001693	526		NM_001693	ENSG00000147416	ATP6V1B2	ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2	ATPase H+ transporting V1 subunit B2	protein-coding
38660	chr11	46383971	46384700	+	0	NA	TTS (NM_001270551)	TTS (NM_001270551)	2624	NM_001012333	4192		NM_002391	ENSG00000110492	MDK	ARAP|MK|NEGF2	midkine	protein-coding
65922	chr14	55328671	55328830	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	56596	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
101738	chr17	69414421	69415830	+	0	NA	intron (NM_002758, intron 1 of 11)	intron (NM_002758, intron 1 of 11)	428	NM_002758	5608		NM_002758	ENSG00000108984	MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
214940	chr7	151742651	151743150	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	-6586	NM_001304527	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
162820	chr3	49159521	49159780	+	0	NA	Intergenic	AluY|SINE|Alu	-5249	NR_004405	22973		NR_004405		LAMB2P1	LAMB2L	laminin subunit beta 2 pseudogene 1	pseudo
179458	chr4	184448651	184449450	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	25500	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
200797	chr6	137894371	137894530	+	0	NA	Intergenic	AluSz6|SINE|Alu	-26217	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
127451	chr2	42192701	42193230	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-22734	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
117404	chr19	19619871	19620100	+	0	NA	Intergenic	Intergenic	-1298	NR_038198	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
97224	chr17	42788021	42788280	+	0	NA	exon (NM_001321299, exon 8 of 18)	exon (NM_001321299, exon 8 of 18)	7540	NM_032387	65266		NM_032387	ENSG00000126562	WNK4	PHA2B|PRKWNK4	WNK lysine deficient protein kinase 4	protein-coding
62439	chr13	99324271	99324450	+	0	NA	intron (NR_026644, intron 6 of 8)	MLT1I|LTR|ERVL-MaLR	-16961	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
130799	chr2	86930521	86930880	+	0	NA	intron (NM_001024457, intron 1 of 22)	CpG	-11418	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
114190	chr19	11405321	11405580	+	0	NA	intron (NM_001161616, intron 7 of 18)	intron (NM_001161616, intron 7 of 18)	13864	NM_001161616	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
177846	chr4	127963021	127964300	+	0	NA	intron (NM_001371590, intron 1 of 11)	LTR12C|LTR|ERV1	1513	NM_001371594	256471		NM_152778	ENSG00000164073	MFSD8	CCMD|CLN7	major facilitator superfamily domain containing 8	protein-coding
154110	chr22	31091271	31091430	+	0	NA	exon (NM_006932, exon 10 of 20)	exon (NM_006932, exon 10 of 20)	6354	NM_001207018	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
136334	chr2	175187471	175187780	+	0	NA	Intergenic	LTR41C|LTR|ERVL	-5915	NM_001002258	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
135866	chr2	170963801	170964000	+	0	NA	intron (NM_015530, intron 9 of 9)	AluJb|SINE|Alu	34647	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
40532	chr11	64298021	64298500	+	0	NA	intron (NR_133660, intron 5 of 5)	intron (NR_133660, intron 5 of 5)	-2098	NM_001039496	25858		NM_001039496	ENSG00000219435	CATSPERZ	C11orf20|TEX40	catsper channel auxiliary subunit zeta	protein-coding
221244	chr8	122537901	122538100	+	0	NA	intron (NR_131202, intron 2 of 3)	intron (NR_131202, intron 2 of 3)	30644	NR_131202	105375734		NR_131202		SMILR	-	smooth muscle induced lncRNA, enhancer of proliferation	ncRNA
214696	chr7	150985971	150986900	+	0	NA	Intergenic	Intergenic	-4582	NM_000603	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
103527	chr17	78535271	78535830	+	0	NA	intron (NM_173628, intron 19 of 80)	(ACGCAC)n|Simple_repeat|Simple_repeat	41846	NM_173628	8632		NM_003727	ENSG00000187775	DNAH17	DNAHL1|DNEL2|SPGF39	dynein axonemal heavy chain 17	protein-coding
164462	chr3	59772501	59773330	+	0	NA	intron (NM_001354590, intron 7 of 8)	intron (NM_001354590, intron 7 of 8)	-114418	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
233529	chrX	94911	96580	+	0	NA	Intergenic	Intergenic	-180611	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228329	chr9	98708521	98708780	+	0	NA	exon (NM_005458, exon 1 of 19)	exon (NM_005458, exon 1 of 19)	285	NM_005458	9568		NM_005458	ENSG00000136928	GABBR2	DEE59|EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS	gamma-aminobutyric acid type B receptor subunit 2	protein-coding
168994	chr3	152419521	152420180	+	0	NA	intron (NM_207295, intron 3 of 8)	L1PA7|LINE|L1	-78860	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
136001	chr2	172340501	172340700	+	0	NA	Intergenic	HAL1|LINE|L1	-86736	NM_001316306	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
172432	chr4	1865621	1865880	+	0	NA	Intergenic	Intergenic	-5643	NM_001042424	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
57747	chr12	122950571	122951130	+	0	NA	intron (NM_203444, intron 2 of 11)	AluJo|SINE|Alu	15613	NM_001243014	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
140060	chr2	231400351	231400650	+	0	NA	3' UTR (NM_145236, exon 2 of 2)	3' UTR (NM_145236, exon 2 of 2)	4790	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
238638	chrX	153968671	153969400	+	0	NA	non-coding (NR_046608, exon 1 of 3)	non-coding (NR_046608, exon 1 of 3)	270	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
150061	chr21	37390401	37391650	+	0	NA	intron (NM_001347723, intron 1 of 10)	L1MC4|LINE|L1	23468	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
202466	chr6	158214071	158214530	+	0	NA	Intergenic	Intergenic	45950	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
18525	chr1	161905251	161905550	+	0	NA	intron (NM_007348, intron 14 of 15)	intron (NM_007348, intron 14 of 15)	119065	NM_001347700	25903		NM_015441	ENSG00000162745	OLFML2B	-	olfactomedin like 2B	protein-coding
226960	chr9	79883051	79883950	+	0	NA	intron (NR_121213, intron 1 of 2)	intron (NR_121213, intron 1 of 2)	58970	NR_121213	101927477		NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
231435	chr9	131251671	131251830	+	0	NA	Intergenic	AluJo|SINE|Alu	24760	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
227275	chr9	89379601	89380000	+	0	NA	intron (NM_001371194, intron 15 of 15)	intron (NM_001371194, intron 15 of 15)	60949	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
83208	chr16	23594621	23594880	+	0	NA	intron (NM_005003, intron 1 of 4)	AluJb|SINE|Alu	1566	NM_005003	4706		NM_005003	ENSG00000004779	NDUFAB1	ACP|ACP1|FASN2A|SDAP	NADH:ubiquinone oxidoreductase subunit AB1	protein-coding
120402	chr19	43764971	43765930	+	0	NA	Intergenic	Intergenic	-10488	NM_019108	56006		NM_019108	ENSG00000105771	SMG9	C19orf61|F17127_1|HBMS|NEDITPO	SMG9 nonsense mediated mRNA decay factor	protein-coding
180231	chr5	1570221	1571050	+	0	NA	Intergenic	Intergenic	23896	NR_003263	728609		NR_003263	ENSG00000291055	SDHAP3	SDHACL|SDHAL	SDHA pseudogene 3	pseudo
112238	chr19	5718321	5718800	+	0	NA	intron (NM_001276480, intron 1 of 17)	intron (NM_001276480, intron 1 of 17)	1586	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
169355	chr3	160403921	160404300	+	0	NA	promoter-TSS (NR_029525)	promoter-TSS (NR_029525)	-478	NR_029663	406949		NR_029663	ENSG00000207779	MIR15B	MIRN15B|hsa-mir-15b|miR-15b	microRNA 15b	ncRNA
15132	chr1	148748501	148748900	+	0	NA	promoter-TSS (NM_001355407).2	promoter-TSS (NM_001355407).2	-74	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
144111	chr20	33862571	33863180	+	0	NA	Intergenic	CpG	51527	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
117096	chr19	19171401	19171600	+	0	NA	intron (NR_027308, intron 5 of 11)	AluJo|SINE|Alu	-1237	NM_001367282	100271849		NM_001145785	ENSG00000213999	MEF2B	RSRFR2	myocyte enhancer factor 2B	protein-coding
132822	chr2	110570801	110571350	+	0	NA	intron (NM_001384363, intron 1 of 22).2	AluSz6|SINE|Alu	5825	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
9358	chr1	47180951	47181530	+	0	NA	TTS (NR_047498)	TTS (NR_047498)	1990	NR_047498	100874253		NR_047498	ENSG00000224805	LINC00853	PDZK1IP1-AS1|ncRNA-a4	long intergenic non-protein coding RNA 853	ncRNA
157016	chr22	42532751	42534050	+	0	NA	Intergenic	LTR13|LTR|ERVK	-13604	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
76972	chr15	78180871	78181030	+	0	NA	intron (NM_001199377, intron 8 of 13)	intron (NM_001199377, intron 8 of 13)	31588	NM_005530	3419		NM_005530	ENSG00000166411	IDH3A	RP90	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein-coding
184239	chr5	96656771	96657900	+	0	NA	Intergenic	Intergenic	-4702	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
200542	chr6	136258921	136259600	+	0	NA	3' UTR (NM_001077440, exon 12 of 12)	3' UTR (NM_001077440, exon 12 of 12)	-8949	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
60207	chr13	40480471	40481300	+	0	NA	intron (NR_024505, intron 1 of 6)	intron (NR_024505, intron 1 of 6)	121	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
30138	chr10	74079901	74080500	+	0	NA	intron (NM_014000, intron 6 of 21)	intron (NM_014000, intron 6 of 21)	70628	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
236163	chrX	64842501	64842700	+	0	NA	Intergenic	LTR21C|LTR|ERVL	133850	NM_018684	55906		NM_018684	ENSG00000126970	ZC4H2	HCA127|KIAA1166|MCS|MRXS4|WRWF|WRWFFR|WWS	zinc finger C4H2-type containing	protein-coding
89155	chr16	88528571	88528730	+	0	NA	intron (NM_153813, intron 6 of 9)	MER20|DNA|hAT-Charlie	2403	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
154069	chr22	30705851	30706500	+	0	NA	intron (NM_030758, intron 1 of 13)	intron (NM_030758, intron 1 of 13)	11301	NM_001282739	23762		NM_030758	ENSG00000184792	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
160326	chr3	27640551	27640650	+	0	NA	Intergenic	AluJo|SINE|Alu	81723	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
70003	chr14	100067071	100067300	+	0	NA	intron (NM_016337, intron 1 of 13)	intron (NM_016337, intron 1 of 13)	1763	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
140119	chr2	231523701	231524980	+	0	NA	3' UTR (NM_006056, exon 3 of 3)	3' UTR (NM_006056, exon 3 of 3)	6105	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
68914	chr14	91361501	91361700	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	56220	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
76301	chr15	74319871	74320230	+	0	NA	intron (NM_182791, intron 1 of 8)	intron (NM_182791, intron 1 of 8)	1491	NM_182791	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
115137	chr19	14386221	14387280	+	0	NA	intron (NM_001025160, intron 1 of 18)	AluSx1|SINE|Alu	5306	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
141501	chr2	241125351	241126050	+	0	NA	intron (NM_001252124, intron 10 of 13)	intron (NM_001252124, intron 10 of 13)	-23368	NR_028049	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
183759	chr5	81719371	81719730	+	0	NA	intron (NM_001256733, intron 1 of 15)	intron (NM_001256733, intron 1 of 15)	31703	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
205422	chr7	16652251	16652800	+	0	NA	intron (NM_001159767, intron 1 of 11)	AluSq2|SINE|Alu	6344	NM_014038	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
151500	chr21	46368271	46369330	+	0	NA	intron (NM_006031, intron 15 of 46)	intron (NM_006031, intron 15 of 46)	44133	NM_001315529	5116		NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
51335	chr12	51370571	51370730	+	0	NA	intron (NM_007210, intron 4 of 11)	L1MB3|LINE|L1	-20667	NM_001267615	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
30831	chr10	86400701	86401930	+	0	NA	Intergenic	CpG	-34520	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
193218	chr6	29830271	29830800	+	0	NA	intron (NM_001384290, intron 6 of 6)	intron (NM_001384290, intron 6 of 6)	2710	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
166913	chr3	125008651	125008950	+	0	NA	intron (NM_020733, intron 8 of 16)	AluSz6|SINE|Alu	47197	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
215705	chr8	1466551	1467050	+	0	NA	intron (NM_001346810, intron 3 of 14)	intron (NM_001346810, intron 3 of 14)	154864	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
34510	chr10	132578971	132579630	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	41513	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
48104	chr12	7642951	7643200	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	22833	NM_001644	339		NM_001644	ENSG00000111701	APOBEC1	APO1|APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme catalytic subunit 1	protein-coding
166282	chr3	112495251	112495580	+	0	NA	intron (NM_001085357, intron 1 of 3)	intron (NM_001085357, intron 1 of 3)	4057	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
190692	chr6	168901	169130	+	0	NA	Intergenic	Intergenic	-20856	NR_109817	107105278		NR_109817		SEPTIN14P6	C6orf88|LINC00266-3|NCRNA00266-3|NCRNA00266C|SEPT14P6|dJ24O22.2	septin 14 pseudogene 6	pseudo
52303	chr12	54740551	54741330	+	0	NA	Intergenic	L1PB1|LINE|L1	-92575	NM_001300854	117159		NM_053283	ENSG00000161634	DCD	AIDD|DCD-1|DSEP|HCAP|PIF	dermcidin	protein-coding
50866	chr12	49179621	49179880	+	0	NA	Intergenic	Intergenic	9330	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
55910	chr12	109734801	109735130	+	0	NA	intron (NR_026662, intron 2 of 2)	intron (NR_026662, intron 2 of 2)	21140	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
188866	chr5	159336601	159336800	+	0	NA	intron (NR_037889, intron 2 of 4)	LTR1E|LTR|ERV1	5182	NR_037889	285626		NR_037889	ENSG00000249738	LOC285626	-	uncharacterized LOC285626	ncRNA
74903	chr15	63607721	63608500	+	0	NA	TTS (NM_003922)	TTS (NM_003922)	-7283	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
197991	chr6	90066621	90066880	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	172281	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
84538	chr16	30533821	30535400	+	0	NA	exon (NM_001305018, exon 1 of 3)	exon (NM_001305018, exon 1 of 3)	360	NM_001305019	65988		NM_023931	ENSG00000169955	ZNF747	-	zinc finger protein 747	protein-coding
35143	chr11	723121	723950	+	0	NA	intron (NM_022772, intron 15 of 20)	intron (NM_022772, intron 15 of 20)	-16452	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
134791	chr2	147846371	147847030	+	0	NA	intron (NM_001278579, intron 2 of 11)	intron (NM_001278579, intron 2 of 11)	1671	NM_001616	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
208290	chr7	66043851	66044550	+	0	NA	Intergenic	CpG	-31619	NM_001024943	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
94315	chr17	28756201	28756400	+	0	NA	3' UTR (NM_001288634, exon 3 of 3)	3' UTR (NM_001288634, exon 3 of 3)	12289	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
239117	chrY	11297601	11298600	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	1123490	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
109119	chr18	80125501	80126000	+	0	NA	intron (NM_014913, intron 2 of 3)	AluJr|SINE|Alu	16488	NM_014913	22850		NM_014913	ENSG00000101544	ADNP2	ZNF508	ADNP homeobox 2	protein-coding
218414	chr8	47596901	47597400	+	0	NA	intron (NR_104581, intron 7 of 16)	Tigger3b|DNA|TcMar-Tigger	-56938	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
116385	chr19	17945571	17945730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5652	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
21290	chr1	204451721	204451980	+	0	NA	intron (NM_001377335, intron 14 of 35)	intron (NM_001377335, intron 14 of 35)	-40033	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
178523	chr4	150960921	150961450	+	0	NA	intron (NM_001367550, intron 2 of 56)	intron (NM_001367550, intron 2 of 56)	54082	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
212808	chr7	130369101	130369730	+	0	NA	TTS (NM_001127441)	TTS (NM_001127441)	-2288	NR_133928	105375504		NR_133928		LOC105375504	-	uncharacterized LOC105375504	ncRNA
98071	chr17	45490271	45491850	+	0	NA	promoter-TSS (NR_027782)	promoter-TSS (NR_027782)	-339	NR_027782	9842		NM_014798	ENSG00000225190	PLEKHM1	AP162|B2|OPTA3|OPTB6	pleckstrin homology and RUN domain containing M1	protein-coding
39247	chr11	57699821	57700080	+	0	NA	exon (NM_015457, exon 12 of 12)	exon (NM_015457, exon 12 of 12)	12265	NR_157587	219541		NM_153450	ENSG00000156603	MED19	DT2P1G7|LCMR1|MED19AS	mediator complex subunit 19	protein-coding
13825	chr1	117623771	117624280	+	0	NA	exon (NM_017709, exon 2 of 2)	exon (NM_017709, exon 2 of 2)	17977	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
134460	chr2	143203801	143204380	+	0	NA	intron (NM_018460, intron 3 of 13)	L2a|LINE|L2	74671	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
80110	chr16	2025571	2025980	+	0	NA	Intergenic	Intergenic	-1127	NM_004785	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
7561	chr1	35139471	35139630	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	53595	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
169967	chr3	179259951	179260350	+	0	NA	promoter-TSS (NR_028135)	promoter-TSS (NR_028135)	-259	NR_028135	27094		NM_014407	ENSG00000171121	KCNMB3	BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3	potassium calcium-activated channel subfamily M regulatory beta subunit 3	protein-coding
211484	chr7	105131151	105131750	+	0	NA	intron (NM_182691, intron 12 of 14)	intron (NM_182691, intron 12 of 14)	117245	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
21265	chr1	204391801	204392000	+	0	NA	Intergenic	L1ME1|LINE|L1	19917	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
126112	chr2	25990471	25990930	+	0	NA	Intergenic	Intergenic	-8203	NM_002254	3797		NM_002254	ENSG00000084731	KIF3C	-	kinesin family member 3C	protein-coding
84769	chr16	30984901	30985900	+	0	NA	TTS (NM_014712)	TTS (NM_014712)	193	NM_001142778	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
96887	chr17	42110251	42110830	+	0	NA	intron (NM_024119, intron 5 of 13)	L2b|LINE|L2	2174	NM_024119	79132		NM_024119	ENSG00000108771	DHX58	D11LGP2|D11lgp2e|LGP2|RLR-3	DExH-box helicase 58	protein-coding
188898	chr5	160020321	160020980	+	0	NA	intron (NM_001282500, intron 2 of 7)	MER1A|DNA|hAT-Charlie	11511	NM_003314	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
18899	chr1	168340671	168341700	+	0	NA	Intergenic	MER57E1|LTR|ERV1	-34339	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
93503	chr17	18991821	18992080	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	12814	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
59311	chr13	24282471	24282630	+	0	NA	intron (NM_001286794, intron 2 of 10)	intron (NM_001286794, intron 2 of 10)	11800	NM_001286793	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
149088	chr21	15795451	15795950	+	0	NA	intron (NM_001352560, intron 5 of 23)	intron (NM_001352560, intron 5 of 23)	65718	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
7008	chr1	31903251	31903350	+	0	NA	Intergenic	AluSx|SINE|Alu	34518	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
118430	chr19	35803671	35804030	+	0	NA	intron (NM_021232, intron 7 of 9)	L1MC4a|LINE|L1	-5941	NR_104176	644050		NR_104176	ENSG00000293484	LINC01529	-	long intergenic non-protein coding RNA 1529	ncRNA
72244	chr15	30472121	30472530	+	0	NA	intron (NR_146104, intron 1 of 7)	intron (NR_146104, intron 1 of 7)	856	NR_146104	100288203		NR_146103		WHAMMP4	-	WHAMM pseudogene 4	pseudo
28037	chr10	43234301	43234700	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	-4761	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
14341	chr1	143974271	143975480	+	0	NA	non-coding (NR_120535, exon 2 of 8)	non-coding (NR_120535, exon 2 of 8)	-1356	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
11376	chr1	89652071	89652400	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	19115	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
183931	chr5	87404401	87404700	+	0	NA	intron (NR_157069, intron 4 of 8)	intron (NR_157069, intron 4 of 8)	8354	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
137595	chr2	197282051	197282880	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	20054	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
41775	chr11	66841151	66841750	+	0	NA	intron (NM_024650, intron 15 of 16)	intron (NM_024650, intron 15 of 16)	-1991	NM_005133	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
199445	chr6	117547501	117548400	+	0	NA	exon (NM_001366458, exon 15 of 15)	exon (NM_001366458, exon 15 of 15)	54561	NM_001017408	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
162571	chr3	48662601	48663300	+	0	NA	promoter-TSS (NR_111921)	promoter-TSS (NR_111921)	-64	NM_001407	1951		NM_001407	ENSG00000008300	CELSR3	ADGRC3|CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1	cadherin EGF LAG seven-pass G-type receptor 3	protein-coding
91059	chr17	3002451	3003100	+	0	NA	intron (NM_001100398, intron 13 of 23)	MIR3|SINE|MIR	-36880	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
95051	chr17	32551151	32551450	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	64307	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
1987	chr1	6624851	6626150	+	0	NA	intron (NM_138350, intron 1 of 4)	CpG	350	NM_001195752	90326		NM_138350	ENSG00000041988	THAP3	-	THAP domain containing 3	protein-coding
83186	chr16	23487101	23487300	+	0	NA	intron (NM_015044, intron 6 of 16)	AluSc|SINE|Alu	23294	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
41614	chr11	66418101	66418350	+	0	NA	Intergenic	Intergenic	-2779	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
5238	chr1	25007351	25007800	+	0	NA	Intergenic	AluJb|SINE|Alu	-15928	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
177879	chr4	128809151	128810600	+	0	NA	promoter-TSS (NM_001287440)	promoter-TSS (NM_001287440)	-103	NM_001287439	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
165254	chr3	73086071	73086650	+	0	NA	Intergenic	Intergenic	24701	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
198673	chr6	107943621	107943900	+	0	NA	intron (NM_007214, intron 1 of 20)	L2a|LINE|L2	14448	NM_007214	11231		NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L	SEC63 homolog, protein translocation regulator	protein-coding
216215	chr8	11943551	11943900	+	0	NA	Intergenic	Intergenic	30874	NM_001033018	613210		NM_001033018	ENSG00000205884	DEFB136	DEFB137	defensin beta 136	protein-coding
196032	chr6	42036371	42036530	+	0	NA	intron (NM_001287434, intron 1 of 4)	AluJb|SINE|Alu	12444	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
107894	chr18	56709401	56709900	+	0	NA	intron (NM_052834, intron 12 of 26)	MIR|SINE|MIR	57953	NM_001382485	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
117068	chr19	19039601	19040650	+	0	NA	intron (NM_001199196, intron 2 of 8)	L1MB7|LINE|L1	-6281	NM_001352071	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
7498	chr1	33302151	33302680	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	18683	NM_001080438	127550		NM_001080438	ENSG00000184389	A3GALT2	A3GALT2P|IGB3S|IGBS3S	alpha 1,3-galactosyltransferase 2	protein-coding
100088	chr17	58311101	58311300	+	0	NA	exon (NM_024418, exon 18 of 31)	exon (NM_024418, exon 18 of 31)	-14250	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
181700	chr5	50634551	50635550	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-30881	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
16943	chr1	155920171	155920680	+	0	NA	promoter-TSS (NR_002974)	promoter-TSS (NR_002974)	-383	NR_002974	677823		NR_002974	ENSG00000207475	SNORA80E	ACA42|SNORA42	small nucleolar RNA, H/ACA box 80E	snoRNA
148537	chr20	64131251	64131630	+	0	NA	Intergenic	Intergenic	-23875	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
154363	chr22	33523371	33523930	+	0	NA	intron (NM_133642, intron 6 of 14)	intron (NM_133642, intron 6 of 14)	48612	NM_001378631	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
206803	chr7	36866471	36866830	+	0	NA	intron (NM_014800, intron 20 of 21)	intron (NM_014800, intron 20 of 21)	52782	NR_031604	100302113		NR_031604	ENSG00000221325	MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA
142115	chr20	2665701	2665900	+	0	NA	Intergenic	Intergenic	-1577	NM_001258384	3420		NM_006899	ENSG00000101365	IDH3B	RP46	isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta	protein-coding
46010	chr11	121590121	121590380	+	0	NA	intron (NM_003105, intron 30 of 47)	intron (NM_003105, intron 30 of 47)	-108461	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
220126	chr8	94721621	94721880	+	0	NA	intron (NM_181787, intron 1 of 18)	intron (NM_181787, intron 1 of 18)	1850	NM_181787	286148		NM_181787	ENSG00000156162	DPY19L4	-	dpy-19 like 4	protein-coding
23135	chr1	226704671	226705780	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-30157	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
120620	chr19	45042371	45042530	+	0	NA	intron (NM_001278439, intron 2 of 19)	AluSx|SINE|Alu	3405	NR_103529	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
198774	chr6	108840371	108840530	+	0	NA	Intergenic	AluY|SINE|Alu	-7966	NM_001286609	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
101390	chr17	67361851	67361950	+	0	NA	intron (NM_001316341, intron 2 of 12)	(A)n|Simple_repeat|Simple_repeat	4677	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
54680	chr12	93404401	93404980	+	0	NA	TTS (NM_003348)	TTS (NM_003348)	26112	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
31850	chr10	99828471	99828830	+	0	NA	intron (NM_000392, intron 19 of 31)	L1M4|LINE|L1	46010	NM_000392	1244		NM_000392	ENSG00000023839	ABCC2	ABC30|CMOAT|DJS|MRP2|cMRP	ATP binding cassette subfamily C member 2	protein-coding
480	chr1	1162321	1162580	+	0	NA	Intergenic	Intergenic	-4654	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
159208	chr3	12890771	12891130	+	0	NA	Intergenic	Intergenic	-5739	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
42416	chr11	69067071	69067500	+	0	NA	intron (NM_139075, intron 7 of 24)	intron (NM_139075, intron 7 of 24)	-15891	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
70669	chr14	103075301	103076700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8210	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
28814	chr10	62242671	62242830	+	0	NA	intron (NM_001282941, intron 3 of 4)	AluSz|SINE|Alu	26094	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
153559	chr22	26642621	26644350	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-13997	NR_033321	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
187441	chr5	142104251	142105330	+	0	NA	Intergenic	MER65A|LTR|ERV1	-3989	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
93605	chr17	19140701	19140900	+	0	NA	intron (NM_001353418, intron 3 of 3)	intron (NM_001353418, intron 3 of 3)	13211	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
75745	chr15	68292171	68292880	+	0	NA	3' UTR (NM_015322, exon 2 of 2)	3' UTR (NM_015322, exon 2 of 2)	14780	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
139255	chr2	219430901	219431100	+	0	NA	Intergenic	Intergenic	-3843	NM_005876	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
182512	chr5	65099851	65100150	+	0	NA	Intergenic	AluYm1|SINE|Alu	331070	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
77131	chr15	79340151	79340250	+	0	NA	intron (NM_001330376, intron 2 of 2)	intron (NM_001330376, intron 2 of 2)	29088	NM_007364	23423		NM_007364	ENSG00000166557	TMED3	C15orf22|P24B|p24g4|p24gamma4|p26	transmembrane p24 trafficking protein 3	protein-coding
163456	chr3	50608621	50608880	+	0	NA	intron (NM_145071, intron 1 of 2)	intron (NM_145071, intron 1 of 2)	3024	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
51554	chr12	52555651	52556500	+	0	NA	Intergenic	Intergenic	-2930	NM_033448	112802		NM_033448	ENSG00000139648	KRT71	HYPT13|K6IRS1|KRT6IRS|KRT6IRS1	keratin 71	protein-coding
208392	chr7	66687101	66687300	+	0	NA	intron (NM_001367745, intron 1 of 7)	AluSx|SINE|Alu	5034	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
222391	chr8	133904251	133904550	+	0	NA	Intergenic	Intergenic	17904	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
155043	chr22	37489371	37490280	+	0	NA	TTS (NM_014550)	TTS (NM_014550)	-3438	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
181057	chr5	36238871	36239230	+	0	NA	intron (NM_001287341, intron 1 of 12)	intron (NM_001287341, intron 1 of 12)	2341	NM_001287340	133686		NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
176610	chr4	99055821	99056480	+	0	NA	intron (NM_015143, intron 9 of 10)	intron (NM_015143, intron 9 of 10)	32638	NM_000671	128		NM_000671	ENSG00000197894	ADH5	ADH-3|ADHX|AMEDS|BMFS7|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding
154445	chr22	35380551	35381550	+	0	NA	promoter-TSS (NM_002133)	promoter-TSS (NM_002133)	-46	NM_002133	3162		NM_002133	ENSG00000100292	HMOX1	HMOX1D|HO-1|HSP32|bK286B10	heme oxygenase 1	protein-coding
100972	chr17	64518871	64519030	+	0	NA	intron (NR_133644, intron 5 of 19)	AluSq|SINE|Alu	11973	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
77838	chr15	88647301	88648030	+	0	NA	intron (NM_001303237, intron 2 of 3)	intron (NM_001303237, intron 2 of 3)	8649	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
230274	chr9	127921421	127922480	+	0	NA	exon (NM_001135219, exon 10 of 10)	exon (NM_001135219, exon 10 of 10)	-4909	NM_175039	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
23253	chr1	227827621	227828180	+	0	NA	intron (NM_001374657, intron 3 of 3)	L1PA11|LINE|L1	12183	NM_183062	339501		NM_183062	ENSG00000185888	PRSS38	MPN2	serine protease 38	protein-coding
184987	chr5	113606521	113606780	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	92956	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
193379	chr6	30344551	30345850	+	0	NA	promoter-TSS (NM_024839)	promoter-TSS (NM_024839)	44	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
32694	chr10	103982751	103982850	+	0	NA	intron (NM_014720, intron 1 of 18)	Tigger17c|DNA|TcMar-Tigger	15660	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
229881	chr9	126500101	126500300	+	0	NA	intron (NM_033446, intron 9 of 9)	intron (NM_033446, intron 9 of 9)	-89696	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
166234	chr3	112130221	112130830	+	0	NA	intron (NM_001190259, intron 1 of 5)	intron (NM_001190259, intron 1 of 5)	2723	NM_152785	257144		NM_152785	ENSG00000174500	GCSAM	GCAT2|GCET2|HGAL	germinal center associated signaling and motility	protein-coding
51042	chr12	49767901	49768700	+	0	NA	Intergenic	AluSg|SINE|Alu	26491	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
196317	chr6	43075551	43075650	+	0	NA	promoter-TSS (NM_152882)	promoter-TSS (NM_152882)	-714	NM_152881	5754		NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
27798	chr10	35607671	35608250	+	0	NA	exon (NM_153368, exon 2 of 2)	exon (NM_153368, exon 2 of 2)	2619	NM_153368	219770		NM_153368	ENSG00000177291	GJD4	CX40.1	gap junction protein delta 4	protein-coding
76861	chr15	77908171	77908800	+	0	NA	Intergenic	Intergenic	18361	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
101127	chr17	65031771	65032830	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	23474	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
61621	chr13	73717301	73718150	+	0	NA	intron (NM_007249, intron 6 of 7)	intron (NM_007249, intron 6 of 7)	153481	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
231129	chr9	129838551	129839230	+	0	NA	intron (NM_001008563, intron 1 of 25)	intron (NM_001008563, intron 1 of 25)	3432	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
65629	chr14	52300721	52301350	+	0	NA	Intergenic	Intergenic	-13277	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
195052	chr6	35495351	35495800	+	0	NA	intron (NM_003214, intron 1 of 12)	intron (NM_003214, intron 1 of 12)	1504	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
179514	chr4	184763451	184763650	+	0	NA	intron (NR_167706, intron 16 of 21)	intron (NR_167706, intron 16 of 21)	-29454	NR_104593	79682		NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
219423	chr8	71827101	71827330	+	0	NA	Intergenic	Intergenic	-15908	NR_033652	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
130077	chr2	74493751	74494050	+	0	NA	non-coding (NR_027749, exon 12 of 12)	non-coding (NR_027749, exon 12 of 12)	4888	NM_001376140	64427		NM_022492	ENSG00000115282	TTC31	-	tetratricopeptide repeat domain 31	protein-coding
200079	chr6	130138121	130139280	+	0	NA	intron (NM_001007102, intron 21 of 21)	intron (NM_001007102, intron 21 of 21)	77185	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
239471	chrY	56730651	56731180	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-223340	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
82579	chr16	18785871	18786430	+	0	NA	intron (NM_001019, intron 3 of 4)	AluSx|SINE|Alu	4184	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
149972	chr21	36630771	36630930	+	0	NA	Intergenic	Intergenic	-54281	NM_001146077	23562		NM_012130	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
72006	chr15	25902901	25903500	+	0	NA	intron (NR_040082, intron 1 of 4)	intron (NR_040082, intron 1 of 4)	840	NR_040082	100128714		NR_040082	ENSG00000206187	LINC02346	-	long intergenic non-protein coding RNA 2346	ncRNA
194208	chr6	32182821	32183430	+	0	NA	exon (NM_001206936, exon 5 of 10)	exon (NM_001206936, exon 5 of 10)	1128	NR_038190	177		NM_001136	ENSG00000204305	AGER	RAGE|SCARJ1|sRAGE	advanced glycosylation end-product specific receptor	protein-coding
12524	chr1	108505601	108506100	+	0	NA	Intergenic	Intergenic	-54250	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
170297	chr3	184329851	184330900	+	0	NA	intron (NM_198244, intron 25 of 29)	AluSx3|SINE|Alu	4679	NR_003055	692107		NR_003055	ENSG00000212158	SNORD66	HBII-142	small nucleolar RNA, C/D box 66	snoRNA
76400	chr15	74629571	74631250	+	0	NA	TTS (NM_003992)	TTS (NM_003992)	14574	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
92740	chr17	14312071	14312630	+	0	NA	intron (NM_006041, intron 1 of 1)	intron (NM_006041, intron 1 of 1)	8610	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
199363	chr6	116136601	116137280	+	0	NA	intron (NM_152729, intron 6 of 11)	intron (NM_152729, intron 6 of 11)	-10808	NM_000493	1300		NM_000493	ENSG00000123500	COL10A1	-	collagen type X alpha 1 chain	protein-coding
107671	chr18	49168771	49169630	+	0	NA	intron (NM_017653, intron 13 of 16)	L2c|LINE|L2	-119432	NR_039898	100616420		NR_039898	ENSG00000263849	MIR4744	-	microRNA 4744	ncRNA
52863	chr12	57131001	57131630	+	0	NA	intron (NM_002332, intron 1 of 88)	intron (NM_002332, intron 1 of 88)	2832	NM_002332	4035		NM_002332	ENSG00000123384	LRP1	A2MR|APOER|APR|CD91|DDH3|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5	LDL receptor related protein 1	protein-coding
50306	chr12	46455921	46456180	+	0	NA	intron (NR_125378, intron 3 of 3)	intron (NR_125378, intron 3 of 3)	71943	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
31496	chr10	96656051	96656750	+	0	NA	intron (NM_152309, intron 3 of 16)	intron (NM_152309, intron 3 of 16)	64114	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
76168	chr15	72927401	72927600	+	0	NA	Intergenic	L1PB4|LINE|L1	-124963	NM_002499	4756		NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
148248	chr20	63646201	63646400	+	0	NA	intron (NR_075070, intron 1 of 4)	intron (NR_075070, intron 1 of 4)	6466	NM_001276310	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
2302	chr1	8986551	8987150	+	0	NA	Intergenic	Intergenic	39495	NM_207420	155184		NM_207420	ENSG00000197241	SLC2A7	GLUT-7|GLUT7|hGLUT7	solute carrier family 2 member 7	protein-coding
166380	chr3	113288001	113288400	+	0	NA	TTS (NM_001378074)	TTS (NM_001378074)	76084	NM_001301861	91653		NM_033254	ENSG00000144857	BOC	Boi|CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
211432	chr7	105063751	105064430	+	0	NA	intron (NM_182931, intron 5 of 26)	intron (NM_182931, intron 5 of 26)	49885	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
107358	chr18	45924801	45925050	+	0	NA	intron (NM_020964, intron 14 of 43)	MIR|SINE|MIR	42404	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
41880	chr11	67244171	67244330	+	0	NA	intron (NM_012308, intron 13 of 20)	intron (NM_012308, intron 13 of 20)	4236	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
33922	chr10	124603701	124603900	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-100228	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
202075	chr6	154245451	154246100	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	84306	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
117747	chr19	29662721	29663230	+	0	NA	Intergenic	Intergenic	-2486	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
33893	chr10	124470351	124470450	+	0	NA	intron (NM_001167880, intron 1 of 5)	intron (NM_001167880, intron 1 of 5)	8577	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
200373	chr6	134196571	134197030	+	0	NA	intron (NM_001143676, intron 3 of 13)	intron (NM_001143676, intron 3 of 13)	-18939	NM_001143677	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
231994	chr9	133345521	133345780	+	0	NA	intron (NM_133640, intron 2 of 4).2	intron (NM_133640, intron 2 of 4).2	2481	NM_133640	6837		NM_006752	ENSG00000148297	MED22	MED24|SRB6|SURF5|surf-5	mediator complex subunit 22	protein-coding
36639	chr11	7663651	7663750	+	0	NA	Intergenic	L1PA2|LINE|L1	9191	NM_001302827	51700		NM_016229	ENSG00000166394	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
50455	chr12	47739121	47739600	+	0	NA	intron (NM_001098532, intron 22 of 26)	intron (NM_001098532, intron 22 of 26)	-13870	NM_001172439	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
108993	chr18	79693671	79693830	+	0	NA	intron (NM_001202504, intron 1 of 12)	intron (NM_001202504, intron 1 of 12)	12320	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
116157	chr19	17390201	17390500	+	0	NA	Intergenic	Intergenic	-13008	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
54037	chr12	75722401	75723180	+	0	NA	Intergenic	Intergenic	-211181	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
29075	chr10	67898601	67899350	+	0	NA	intron (NM_001142498, intron 3 of 7)	intron (NM_001142498, intron 3 of 7)	7573	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
226180	chr9	64772121	64772530	+	0	NA	Intergenic	Intergenic	-26959	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
101292	chr17	66414401	66414900	+	0	NA	intron (NR_110822, intron 2 of 3)	intron (NR_110822, intron 2 of 3)	2204	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
161638	chr3	43300421	43300680	+	0	NA	intron (NM_017719, intron 2 of 6)	intron (NM_017719, intron 2 of 6)	14010	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
91834	chr17	7192671	7193150	+	0	NA	intron (NM_001365, intron 19 of 21)	intron (NM_001365, intron 19 of 21)	12277	NM_001321077	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
134873	chr2	148733471	148733650	+	0	NA	intron (NM_015630, intron 2 of 13)	AluJo|SINE|Alu	88809	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
61570	chr13	71290931	71292330	+	0	NA	Intergenic	Intergenic	276489	NR_047699	100885781		NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA
126686	chr2	30138671	30139500	+	0	NA	Intergenic	L1MB2|LINE|L1	-7922	NM_001127401	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
168435	chr3	142577571	142578100	+	0	NA	intron (NM_001184, intron 1 of 46)	intron (NM_001184, intron 1 of 46)	898	NM_001354579	545		NM_001184	ENSG00000175054	ATR	FCTCS|FRP1|MEC1|SCKL|SCKL1	ATR serine/threonine kinase	protein-coding
68066	chr14	75261671	75263100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-16443	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
114821	chr19	13814421	13815080	+	0	NA	exon (NM_001367834, exon 7 of 14)	exon (NM_001367834, exon 7 of 14)	19307	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
40413	chr11	64148521	64149780	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	16963	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
199069	chr6	111643801	111644000	+	0	NA	Intergenic	AluJr|SINE|Alu	-37626	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
133926	chr2	130376771	130377480	+	0	NA	Intergenic	Intergenic	21069	NM_014369	26469		NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase non-receptor type 18	protein-coding
67182	chr14	68822121	68823000	+	0	NA	Intergenic	Intergenic	-26317	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
170122	chr3	183253701	183255050	+	0	NA	intron (NM_032047, intron 1 of 1)	CpG	1122	NM_032047	84002		NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
137175	chr2	191124671	191125030	+	0	NA	intron (NM_003151, intron 3 of 23)	L2|LINE|L2	26144	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
124483	chr19	58557601	58560090	+	0	NA	promoter-TSS (NM_003969)	promoter-TSS (NM_003969)	-234	NM_003969	9040		NM_003969	ENSG00000130725	UBE2M	UBC-RS2|UBC12|hUbc12	ubiquitin conjugating enzyme E2 M	protein-coding
196084	chr6	42295821	42296650	+	0	NA	intron (NM_033502, intron 4 of 17)	intron (NM_033502, intron 4 of 17)	-78374	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
155349	chr22	38265821	38266280	+	0	NA	intron (NM_001195072, intron 1 of 9)	intron (NM_001195072, intron 1 of 9)	6614	NM_001195071	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
125085	chr2	9699251	9699930	+	0	NA	Intergenic	Intergenic	-68593	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
188354	chr5	151745151	151745730	+	0	NA	intron (NM_004045, intron 3 of 3)	intron (NM_004045, intron 3 of 3)	13191	NM_004045	475		NM_004045	ENSG00000177556	ATOX1	ATX1|HAH1	antioxidant 1 copper chaperone	protein-coding
85137	chr16	37767971	37768130	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2021498	NR_033985	400533		NR_033985	ENSG00000261122	LINC02167	-	long intergenic non-protein coding RNA 2167	ncRNA
19844	chr1	182887971	182888850	+	0	NA	TTS (NR_033302)	TTS (NR_033302)	-48819	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
28680	chr10	60714021	60714580	+	0	NA	intron (NM_001204403, intron 1 of 43)	L1MCa|LINE|L1	19228	NM_001204403	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
162191	chr3	47002171	47002330	+	0	NA	exon (NM_015175, exon 31 of 54)	exon (NM_015175, exon 31 of 54)	-9292	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
91017	chr17	2799551	2799880	+	0	NA	intron (NM_001100398, intron 1 of 23)	intron (NM_001100398, intron 1 of 23)	3277	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
79697	chr16	1292371	1292530	+	0	NA	Intergenic	(CTCTCCC)n|Simple_repeat|Simple_repeat	-16702	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
123776	chr19	55109501	55109850	+	0	NA	intron (NM_017607, intron 3 of 21)	intron (NM_017607, intron 3 of 21)	7962	NM_017607	54776		NM_017607	ENSG00000125503	PPP1R12C	AAVS1|LENG3|MBS85|p84|p85	protein phosphatase 1 regulatory subunit 12C	protein-coding
53664	chr12	68387251	68387550	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-54986	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
54814	chr12	94677621	94678100	+	0	NA	Intergenic	Intergenic	-27303	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
178338	chr4	145828771	145829150	+	0	NA	intron (NM_178835, intron 7 of 14)	intron (NM_178835, intron 7 of 14)	109863	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
131144	chr2	91508851	91509180	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	150934	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
152712	chr22	21645171	21645650	+	0	NA	Intergenic	AluSx|SINE|Alu	3108	NM_022044	23753		NM_022044	ENSG00000128228	SDF2L1	-	stromal cell derived factor 2 like 1	protein-coding
112792	chr19	7482651	7484750	+	0	NA	intron (NM_080662, intron 2 of 4)	intron (NM_080662, intron 2 of 4)	5335	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
89233	chr16	88634601	88635680	+	0	NA	Intergenic	CpG	-3432	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
171977	chr4	922021	922350	+	0	NA	intron (NM_005255, intron 1 of 27)	MLT1B|LTR|ERVL-MaLR	10131	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
189995	chr5	177465171	177465730	+	0	NA	intron (NM_004395, intron 8 of 13)	L1MB3|LINE|L1	-3024	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
14440	chr1	144397351	144397850	+	0	NA	Intergenic	Intergenic	-14976	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
50937	chr12	49357871	49358030	+	0	NA	Intergenic	AluSg|SINE|Alu	-9512	NM_023071	65244		NM_023071	ENSG00000123352	SPATS2	Nbla00526|P59SCR|SCR59|SPATA10	spermatogenesis associated serine rich 2	protein-coding
142054	chr20	1850801	1851000	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-43267	NM_001040022	140885		NM_080792	ENSG00000198053	SIRPA	BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP	signal regulatory protein alpha	protein-coding
193073	chr6	28719651	28719750	+	0	NA	Intergenic	Intergenic	-65225	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
48921	chr12	12631271	12631630	+	0	NA	intron (NM_001310, intron 1 of 3)	intron (NM_001310, intron 1 of 3)	19574	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
208143	chr7	64306051	64306150	+	0	NA	Intergenic	Intergenic	-7773	NM_001294255	728927		NM_001170905	ENSG00000234444	ZNF736	-	zinc finger protein 736	protein-coding
59410	chr13	25285371	25285830	+	0	NA	intron (NR_169592, intron 1 of 13)	AluSx1|SINE|Alu	1888	NM_001385233	9107		NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
7227	chr1	32324271	32324980	+	0	NA	intron (NM_004964, intron 4 of 13)	intron (NM_004964, intron 4 of 13)	11608	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
38593	chr11	46278471	46279200	+	0	NA	intron (NM_052854, intron 1 of 11)	intron (NM_052854, intron 1 of 11)	1173	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
223724	chr8	144466801	144467300	+	0	NA	exon (NM_001369769, exon 3 of 18)	exon (NM_001369769, exon 3 of 18)	713	NM_001369769	90990		NM_145754	ENSG00000167702	KIFC2	-	kinesin family member C2	protein-coding
142440	chr20	3930201	3931230	+	0	NA	TTS (NR_136715)	TTS (NR_136715)	-13152	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
31285	chr10	92544351	92544600	+	0	NA	intron (NR_136399, intron 1 of 25)	MIR3|SINE|MIR	29031	NM_001322796	3416		NM_004969	ENSG00000119912	IDE	INSULYSIN	insulin degrading enzyme	protein-coding
229014	chr9	113695321	113696000	+	0	NA	Intergenic	Intergenic	101531	NM_001276262	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
173997	chr4	26317821	26318300	+	0	NA	intron (NM_001374401, intron 1 of 11)	intron (NM_001374401, intron 1 of 11)	-1686	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
59151	chr13	21567871	21568050	+	0	NA	intron (NM_152726, intron 1 of 11)	intron (NM_152726, intron 1 of 11)	36210	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
69422	chr14	94072351	94072980	+	0	NA	intron (NM_020414, intron 2 of 8).2	AluSz|SINE|Alu	8537	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
191093	chr6	3751601	3752800	+	0	NA	promoter-TSS (NM_183373)	promoter-TSS (NM_183373)	-487	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
70962	chr14	104692001	104692430	+	0	NA	intron (NM_032714, intron 1 of 4)	intron (NM_032714, intron 1 of 4)	2597	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
56876	chr12	120294501	120295250	+	0	NA	intron (NM_001385735, intron 1 of 3)	AluSz|SINE|Alu	-1638	NR_003925	26835		NR_003925	ENSG00000200795	RNU4-1	RNU4A|RNU4B2|U4|U4BL	RNA, U4 small nuclear 1	snRNA
26125	chr10	13659601	13660430	+	0	NA	intron (NM_018027, intron 20 of 24)	intron (NM_018027, intron 20 of 24)	47552	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
126263	chr2	27131751	27132800	+	0	NA	non-coding (NR_138479, exon 6 of 9)	non-coding (NR_138479, exon 6 of 9)	2361	NM_013388	10113		NM_013388	ENSG00000138073	PREB	SEC12	prolactin regulatory element binding	protein-coding
7275	chr1	32373571	32374000	+	0	NA	intron (NR_125352, intron 9 of 11)	AluJb|SINE|Alu	11246	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
121796	chr19	47906301	47906780	+	0	NA	Intergenic	AluSp|SINE|Alu	-1138	NR_004437	100126800		NR_004437		SNAR-A12	SNAR-A53102747	small NF90 (ILF3) associated RNA A12	snRNA
78245	chr15	90735971	90736150	+	0	NA	intron (NM_001287246, intron 2 of 22)	L1MC4a|LINE|L1	18714	NM_001287248	641		NM_000057	ENSG00000197299	BLM	BS|MGRISCE1|RECQ2|RECQL2|RECQL3	BLM RecQ like helicase	protein-coding
169187	chr3	156705821	156706080	+	0	NA	3' UTR (NM_015508, exon 6 of 6)	3' UTR (NM_015508, exon 6 of 6)	29286	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
200046	chr6	129751001	129751200	+	0	NA	Intergenic	AluJo|SINE|Alu	-40923	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
2339	chr1	9230971	9231130	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-3724	NM_004285	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
152441	chr22	20594471	20594830	+	0	NA	Intergenic	AluSx|SINE|Alu	86603	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
43263	chr11	75565051	75565450	+	0	NA	intron (NM_001207014, intron 2 of 5)	intron (NM_001207014, intron 2 of 5)	2997	NM_001235	871		NM_001235	ENSG00000149257	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46	serpin family H member 1	protein-coding
117592	chr19	21765251	21765500	+	0	NA	intron (NM_173531, intron 2 of 4)	intron (NM_173531, intron 2 of 4)	2204	NM_001351669	163227		NM_173531	ENSG00000197020	ZNF100	-	zinc finger protein 100	protein-coding
157512	chr22	45336901	45337580	+	0	NA	intron (NR_146323, intron 11 of 11)	intron (NR_146323, intron 11 of 11)	18797	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
224395	chr9	14313001	14313450	+	0	NA	intron (NM_001369468, intron 1 of 8)	CpG	821	NM_005596	4781		NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
81331	chr16	4746001	4746200	+	0	NA	intron (NM_139170, intron 6 of 9)	MER3|DNA|hAT-Charlie	11563	NM_139170	146562		NM_139170	ENSG00000166246	DNAAF8	C16orf71|Daap1	dynein axonemal assembly factor 8	protein-coding
59858	chr13	30581501	30581700	+	0	NA	intron (NM_001370340, intron 1 of 4)	L4_B_Mam|LINE|RTE-X	35987	NM_001370340	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
85339	chr16	50158721	50159630	+	0	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	5869	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
135354	chr2	160407601	160408500	+	0	NA	promoter-TSS (NR_039946)	promoter-TSS (NR_039946)	-168	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
236983	chrX	101410471	101410980	+	0	NA	intron (NM_019597, intron 1 of 1)	L2|LINE|L2	2503	NM_019597	3188		NM_019597	ENSG00000126945	HNRNPH2	FTP3|HNRPH'|HNRPH2|MRXSB|NRPH2|hnRNPH'	heterogeneous nuclear ribonucleoprotein H2	protein-coding
22815	chr1	224644471	224645250	+	0	NA	intron (NM_152495, intron 1 of 5)	intron (NM_152495, intron 1 of 5)	28543	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
193346	chr6	30215451	30216180	+	0	NA	Intergenic	L1PA4|LINE|L1	-2409	NM_001242783	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
13000	chr1	111139271	111140730	+	0	NA	promoter-TSS (NM_006090)	promoter-TSS (NM_006090)	93	NM_001349884	128338		NM_178454	ENSG00000156171	DRAM2	CORD21|PRO180|TMEM77|WWFQ154	DNA damage regulated autophagy modulator 2	protein-coding
112547	chr19	6538021	6538950	+	0	NA	Intergenic	AluY|SINE|Alu	7459	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
103272	chr17	77771271	77771630	+	0	NA	Intergenic	MIRb|SINE|MIR	-42891	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
77720	chr15	85699871	85700030	+	0	NA	intron (NM_007200, intron 17 of 36)	intron (NM_007200, intron 17 of 36)	58775	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
236212	chrX	65692201	65692600	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	24746	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
223623	chr8	144322501	144323100	+	0	NA	intron (NM_012079, intron 1 of 16)	(CAGCCC)n|Simple_repeat|Simple_repeat	4052	NM_012079	8694		NM_012079	ENSG00000185000	DGAT1	ARAT|ARGP1|DGAT|DIAR7	diacylglycerol O-acyltransferase 1	protein-coding
37878	chr11	33895101	33895300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3124	NM_005574	4005		NM_005574	ENSG00000135363	LMO2	LMO-2|RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
110829	chr19	2490871	2491800	+	0	NA	Intergenic	Intergenic	15208	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
98363	chr17	46363151	46363250	+	0	NA	Intergenic	AluSx|SINE|Alu	-1403	NM_001330244	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
74062	chr15	52562021	52562630	+	0	NA	intron (NM_006628, intron 1 of 2)	L1MEd|LINE|L1	6507	NM_001330309	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
63143	chr13	113562401	113562800	+	0	NA	Intergenic	Intergenic	-22088	NR_026580	7027		NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
233974	chrX	2700151	2700450	+	0	NA	intron (NR_135623, intron 1 of 10)	intron (NR_135623, intron 1 of 10)	9005	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
18623	chr1	165928101	165928650	+	0	NA	Intergenic	MIRb|SINE|MIR	20454	NR_037431	100500832		NR_037431	ENSG00000283936	MIR3658	-	microRNA 3658	ncRNA
151159	chr21	44930101	44931590	+	0	NA	Intergenic	Intergenic	-2030	NM_001127491	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
114327	chr19	12063521	12063780	+	0	NA	Intergenic	AluY|SINE|Alu	-1081	NR_134326	284391		NM_001136501	ENSG00000223547	ZNF844	-	zinc finger protein 844	protein-coding
62727	chr13	105343471	105343630	+	0	NA	Intergenic	Intergenic	-122317	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
120594	chr19	45014251	45014650	+	0	NA	intron (NM_006509, intron 3 of 10)	AluJb|SINE|Alu	12986	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
106914	chr18	26103371	26103850	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-12393	NM_001308201	6760		NM_005637	ENSG00000141380	SS18	SMARCL1|SSXT|SYT	SS18 subunit of BAF chromatin remodeling complex	protein-coding
15606	chr1	150608021	150608700	+	0	NA	Intergenic	AluY|SINE|Alu	20773	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
129217	chr2	68231901	68232100	+	0	NA	intron (NM_000945, intron 1 of 5)	AluSx|SINE|Alu	20532	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
37171	chr11	13955571	13956330	+	0	NA	Intergenic	Intergenic	-6773	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
199110	chr6	111682321	111682680	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	-76226	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
114243	chr19	11504521	11506830	+	0	NA	TTS (NM_001142465)	TTS (NM_001142465)	164	NM_138783	115950		NM_138783	ENSG00000161914	ZNF653	E430039K05Rik|ZIP67	zinc finger protein 653	protein-coding
42105	chr11	67586471	67586630	+	0	NA	exon (NM_000852, exon 7 of 7)	exon (NM_000852, exon 7 of 7)	2738	NM_000852	2950		NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
99538	chr17	50359871	50360450	+	0	NA	non-coding (NR_110010, exon 10 of 10)	non-coding (NR_110010, exon 10 of 10)	13024	NM_016504	51264		NM_016504	ENSG00000108826	MRPL27	L27mt|bL27m	mitochondrial ribosomal protein L27	protein-coding
167893	chr3	136143651	136143950	+	0	NA	intron (NM_002718, intron 13 of 13)	AluSz|SINE|Alu	50668	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
178461	chr4	148171651	148171750	+	0	NA	intron (NM_000901, intron 4 of 8)	intron (NM_000901, intron 4 of 8)	270714	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
3223	chr1	13771201	13771600	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	21985	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
143101	chr20	23353851	23354350	+	0	NA	exon (NM_013248, exon 2 of 2)	exon (NM_013248, exon 2 of 2)	3309	NM_013248	29107		NM_013248	ENSG00000132661	NXT1	MTR2|P15	nuclear transport factor 2 like export factor 1	protein-coding
16835	chr1	155663051	155663600	+	0	NA	intron (NM_139119, intron 9 of 10)	AluSc5|SINE|Alu	15930	NR_132762	106633810		NR_132762		SCARNA26A	-	small Cajal body-specific RNA 26A	ncRNA
189482	chr5	173093801	173094000	+	0	NA	intron (NM_153607, intron 4 of 8)	L1MA9|LINE|L1	37548	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
89315	chr16	88725551	88725850	+	0	NA	intron (NM_001142864, intron 27 of 50)	intron (NM_001142864, intron 27 of 50)	-5480	NR_103774	100289580		NM_207451		HSALR1	-	HSP90AB1 associated lncRNA 1	ncRNA
41133	chr11	65578671	65579350	+	0	NA	intron (NM_001099409, intron 1 of 18)	intron (NM_001099409, intron 1 of 18)	2957	NM_001099409	254102		NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1 like 1	protein-coding
112825	chr19	7520721	7521200	+	0	NA	TTS (NM_018083)	TTS (NM_018083)	-1664	NM_020533	57192		NM_020533	ENSG00000090674	MCOLN1	LECD|MG-2|ML1|ML4|MLIV|MST080|MSTP080|TRP-ML1|TRPM-L1|TRPML1	mucolipin TRP cation channel 1	protein-coding
114570	chr19	12902301	12902500	+	0	NA	intron (NM_001105578, intron 3 of 5)	AluJo|SINE|Alu	11240	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
204071	chr7	2040821	2041480	+	0	NA	intron (NM_001304524, intron 10 of 16)	MER67B|LTR|ERV1	47902	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
123749	chr19	55075551	55077000	+	0	NA	intron (NM_133180, intron 1 of 19)	MSR1|Satellite|Satellite	406	NM_133180	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
227842	chr9	93468671	93469280	+	0	NA	intron (NM_001286723, intron 1 of 9)	intron (NM_001286723, intron 1 of 9)	-15374	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
218558	chr8	54138951	54139330	+	0	NA	intron (NM_014175, intron 3 of 4)	AluSx|SINE|Alu	3899	NM_014175	29088		NM_014175	ENSG00000137547	MRPL15	HSPC145|L15mt|MRP-L15|MRP-L7|RPML7|uL15m	mitochondrial ribosomal protein L15	protein-coding
42498	chr11	70207001	70207200	+	0	NA	3' UTR (NM_003824, exon 2 of 2)	3' UTR (NM_003824, exon 2 of 2)	3804	NM_003824	8772		NM_003824	ENSG00000168040	FADD	GIG3|IMD90|MORT1	Fas associated via death domain	protein-coding
64478	chr14	24295801	24296000	+	0	NA	intron (NM_138452, intron 4 of 8)	intron (NM_138452, intron 4 of 8)	3560	NM_138452	115817		NM_138452	ENSG00000157379	DHRS1	SDR19C1	dehydrogenase/reductase 1	protein-coding
62915	chr13	111046871	111047030	+	0	NA	Intergenic	Intergenic	-48888	NR_120415	101927802		NR_120415		LINC00368	-	long intergenic non-protein coding RNA 368	ncRNA
235702	chrX	48834221	48835200	+	0	NA	intron (NM_013271, intron 1 of 2)	intron (NM_013271, intron 1 of 2)	900	NM_013271	27344		NM_013271	ENSG00000102109	PCSK1N	BigLEN|PEN|PROSAAS|SAAS|SCG8|SgVIII	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
178790	chr4	153485101	153485500	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	18940	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
153100	chr22	23521421	23523030	+	0	NA	Intergenic	Intergenic	-15877	NR_109832	101978785		NR_109832		PCAT14	-	prostate cancer associated transcript 14	ncRNA
233038	chr9	137043851	137044150	+	0	NA	intron (NM_015392, intron 1 of 8)	intron (NM_015392, intron 1 of 8)	2177	NM_015392	56654		NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
222436	chr8	134843671	134844030	+	0	NA	Intergenic	Intergenic	5781	NR_126028	552853		NR_126028	ENSG00000253433	NCRNA00250	C8orf24	non-protein coding RNA 250	ncRNA
99769	chr17	51097851	51098350	+	0	NA	intron (NM_001130527, intron 1 of 29)	AluJb|SINE|Alu	22768	NM_001130527	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
7746	chr1	36156711	36158880	+	0	NA	intron (NM_001286365, intron 1 of 15)	intron (NM_001286365, intron 1 of 15)	1635	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
206930	chr7	38229471	38229900	+	0	NA	intron (NM_032016, intron 8 of 8)	intron (NM_032016, intron 8 of 8)	43962	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
155376	chr22	38300071	38300680	+	0	NA	intron (NM_152221, intron 5 of 10)	MIRb|SINE|MIR	17058	NM_152221	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
191399	chr6	8075451	8076150	+	0	NA	intron (NM_001135650, intron 3 of 3)	Tigger1|DNA|TcMar-Tigger	10733	NR_003703	100124533		NR_003703		SCARNA27	-	small Cajal body-specific RNA 27	ncRNA
136382	chr2	176118901	176119130	+	0	NA	exon (NM_002148, exon 2 of 2)	exon (NM_002148, exon 2 of 2)	2237	NM_002148	3236		NM_002148	ENSG00000128710	HOXD10	HOX4|HOX4D|HOX4E|Hox-4.4	homeobox D10	protein-coding
94155	chr17	28358671	28358830	+	0	NA	intron (NM_152464, intron 1 of 5)	intron (NM_152464, intron 1 of 5)	1103	NM_152464	147007		NM_152464	ENSG00000244045	TMEM199	C17orf32|CDG2P|VMA12|VPH2	transmembrane protein 199	protein-coding
222897	chr8	142788621	142788880	+	0	NA	Intergenic	Intergenic	-2211	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
129030	chr2	64985301	64985780	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-2939	NM_001193493	6509		NM_003038	ENSG00000115902	SLC1A4	ASCT1|SATT|SPATCCM	solute carrier family 1 member 4	protein-coding
5119	chr1	24878201	24878600	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	41016	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
119350	chr19	39980621	39981300	+	0	NA	intron (NM_006503, intron 10 of 10)	AluJb|SINE|Alu	9795	NM_006503	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
187712	chr5	143384801	143385200	+	0	NA	intron (NR_157096, intron 1 of 7)	MSTA-int|LTR|ERVL-MaLR	18283	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
17165	chr1	156211221	156211480	+	0	NA	non-coding (NR_104408, exon 4 of 4)	non-coding (NR_104408, exon 4 of 4)	-1638	NM_001199663	100527963		NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF-1|PMF1	PMF1-BGLAP readthrough	protein-coding
172484	chr4	2219751	2220480	+	0	NA	intron (NM_181808, intron 3 of 25)	LTR41C|LTR|ERVL	22006	NM_001303143	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
175813	chr4	77852751	77853590	+	0	NA	Intergenic	Intergenic	-9660	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
11548	chr1	91018851	91019150	+	0	NA	intron (NM_032186, intron 1 of 3)	intron (NM_032186, intron 1 of 3)	2508	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
121768	chr19	47763971	47764750	+	0	NA	intron (NR_132382, intron 2 of 2)	LTR67B|LTR|ERVL	4480	NR_132382	106144593		NR_132382	ENSG00000269656	NOP53-AS1	GLTSCR2-AS1	NOP53 antisense RNA 1	ncRNA
225499	chr9	35660601	35660800	+	0	NA	3' UTR (NM_032818, exon 9 of 9)	3' UTR (NM_032818, exon 9 of 9)	2408	NM_174923	203260		NM_174923	ENSG00000159884	CCDC107	PSEC0222	coiled-coil domain containing 107	protein-coding
164195	chr3	56827101	56827900	+	0	NA	intron (NM_001289698, intron 2 of 10)	MIR|SINE|MIR	-25551	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
23773	chr1	233251351	233251450	+	0	NA	intron (NM_014801, intron 7 of 33)	intron (NM_014801, intron 7 of 33)	44325	NM_001328607	80003		NM_014801	ENSG00000135749	PCNX2	PCNXL2	pecanex 2	protein-coding
76679	chr15	75723521	75724150	+	0	NA	promoter-TSS (NM_175881)	promoter-TSS (NM_175881)	-206	NM_175881	161753		NM_175881	ENSG00000182950	CIMAP1C	ODF3L1	ciliary microtubule associated protein 1C	protein-coding
229387	chr9	121155971	121156750	+	0	NA	intron (NM_007018, intron 27 of 43)	intron (NM_007018, intron 27 of 43)	34590	NM_001330762	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
115728	chr19	16253971	16254500	+	0	NA	Intergenic	AluSz|SINE|Alu	56324	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
196811	chr6	46090171	46090430	+	0	NA	intron (NM_001370650, intron 1 of 6)	intron (NM_001370650, intron 1 of 6)	-9952	NM_001114086	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
130226	chr2	84800471	84800630	+	0	NA	intron (NM_001370, intron 70 of 76)	L1P4d|LINE|L1	80534	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
40849	chr11	65047351	65048100	+	0	NA	exon (NM_005468, exon 12 of 18)	exon (NM_005468, exon 12 of 18)	6515	NM_013299	29901		NM_013299	ENSG00000168061	SAC3D1	HSU79266|SHD1	SAC3 domain containing 1	protein-coding
29493	chr10	70592451	70592550	+	0	NA	Intergenic	LTR16C|LTR|ERVL	10241	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
196536	chr6	44000271	44000700	+	0	NA	promoter-TSS (NR_160954)	promoter-TSS (NR_160954)	-100	NR_160955	221416		NM_153246	ENSG00000181577	LINC03040	C6orf223	long intergenic non-protein coding RNA 3040	ncRNA
144477	chr20	35613951	35614630	+	0	NA	Intergenic	L2a|LINE|L2	-1539	NM_003116	6676		NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
17190	chr1	156240501	156240900	+	0	NA	TTS (NM_007221)	TTS (NM_007221)	-1484	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
80350	chr16	2500871	2502230	+	0	NA	3' UTR (NM_020705, exon 7 of 7)	3' UTR (NM_020705, exon 7 of 7)	-12176	NM_001198569	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
171808	chr4	604201	604450	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-21248	NM_000283	5158		NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|GMP-PDEbeta|PDEB|RP40|rd1	phosphodiesterase 6B	protein-coding
210844	chr7	101019971	101020130	+	0	NA	promoter-TSS (NM_001040105)	promoter-TSS (NM_001040105)	-31	NR_133665	140453		NM_001004430	ENSG00000169876	MUC17	MUC-17|MUC-3|MUC3	mucin 17, cell surface associated	protein-coding
105253	chr17	82432021	82432680	+	0	NA	intron (NM_001369487, intron 5 of 14)	L1M4a1|LINE|L1	-13764	NM_024648	79701		NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron dependent oxygenase domain containing 3	protein-coding
188211	chr5	150704621	150704880	+	0	NA	Intergenic	MER39B|LTR|ERV1	-3688	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
201926	chr6	151399701	151400280	+	0	NA	Intergenic	Intergenic	-8431	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
42733	chr11	72695971	72696330	+	0	NA	intron (NM_001369489, intron 21 of 31)	MER1B|DNA|hAT-Charlie	-4324	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
1980	chr1	6604901	6605100	+	0	NA	Intergenic	AluJr|SINE|Alu	-2131	NM_014851	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
179963	chr5	839271	839830	+	0	NA	intron (NM_024786, intron 5 of 12)	intron (NM_024786, intron 5 of 12)	11436	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
230618	chr9	128629321	128629730	+	0	NA	intron (NM_001375318, intron 53 of 58)	intron (NM_001375318, intron 53 of 58)	27325	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
41705	chr11	66646151	66646480	+	0	NA	3' UTR (NM_001198845, exon 3 of 3)	3' UTR (NM_001198845, exon 3 of 3)	7612	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
119665	chr19	40832001	40832200	+	0	NA	Intergenic	Intergenic	18347	NM_000762	1548		NM_000762	ENSG00000255974	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450 family 2 subfamily A member 6	protein-coding
233292	chr9	137318101	137318580	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-16069	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
230485	chr9	128225571	128225930	+	0	NA	intron (NM_001374269, intron 10 of 21)	intron (NM_001374269, intron 10 of 21)	19080	NR_029619	406978		NR_029619	ENSG00000207581	MIR199B	MIRN199B|mir-199b	microRNA 199b	ncRNA
168527	chr3	143975421	143975880	+	0	NA	intron (NM_001134470, intron 1 of 2)	intron (NM_001134470, intron 1 of 2)	2569	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
11306	chr1	89285451	89286400	+	0	NA	Intergenic	MSTA1|LTR|ERVL-MaLR	4437	NR_077244	729930		NR_077244		LOC729930	-	intraflagellar transport associated protein pseudogene	pseudo
59912	chr13	30843571	30843730	+	0	NA	Intergenic	Intergenic	-38912	NR_103813	440132		NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA
181281	chr5	39375971	39376550	+	0	NA	intron (NM_001343, intron 12 of 14)	intron (NM_001343, intron 12 of 14)	-11765	NM_001737	735		NM_001737	ENSG00000113600	C9	ARMD15|C9D	complement C9	protein-coding
103994	chr17	80040201	80040600	+	0	NA	intron (NM_001330508, intron 3 of 10)	AluSx|SINE|Alu	3758	NM_017950	55036		NM_017950	ENSG00000141519	CCDC40	CFAP172|CILD15|FAP172	coiled-coil domain 40 molecular ruler complex subunit	protein-coding
128676	chr2	61474251	61476100	+	0	NA	Intergenic	AluSp|SINE|Alu	-4088	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
235506	chrX	47181921	47182180	+	0	NA	intron (NM_005676, intron 16 of 23)	intron (NM_005676, intron 16 of 23)	-8797	NM_153280	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
124158	chr19	56104321	56104730	+	0	NA	intron (NM_001351682, intron 1 of 1)	CpG	16770	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
149788	chr21	34931571	34931730	+	0	NA	intron (NM_001754, intron 2 of 8)	MER117|DNA|hAT-Charlie	-42951	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
157133	chr22	42792201	42792430	+	0	NA	Intergenic	Intergenic	64958	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
14942	chr1	147641921	147642480	+	0	NA	TTS (NM_016361)	TTS (NM_016361)	28324	NR_136634	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
228170	chr9	97199951	97200050	+	0	NA	intron (NR_136286, intron 3 of 17)	CpG	-38426	NR_036526	100499484		NR_036526	ENSG00000254876	SUGT1P4-STRA6LP	-	SUGT1P4-STRA6LP readthrough	pseudo
93573	chr17	19104601	19105350	+	0	NA	Intergenic	AluJb|SINE|Alu	7661	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
211842	chr7	108568001	108568330	+	0	NA	intron (NM_001130475, intron 1 of 2)	intron (NM_001130475, intron 1 of 2)	1288	NM_182529	168451		NM_182529	ENSG00000177683	THAP5	-	THAP domain containing 5	protein-coding
73210	chr15	41562721	41563130	+	0	NA	intron (NM_006293, intron 4 of 18)	intron (NM_006293, intron 4 of 18)	2953	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
220340	chr8	99002201	99003000	+	0	NA	Intergenic	Intergenic	-10674	NM_017890	157680		NM_015243	ENSG00000132549	VPS13B	BLTP5B|CHS1|COH1	vacuolar protein sorting 13 homolog B	protein-coding
187831	chr5	146878231	146879150	+	0	NA	promoter-TSS (NM_181675)	promoter-TSS (NM_181675)	67	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
191520	chr6	11362521	11362780	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	19698	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
79898	chr16	1608721	1608980	+	0	NA	intron (NM_014714, intron 2 of 30)	AluJo|SINE|Alu	3222	NM_014714	9742		NM_014714	ENSG00000187535	IFT140	MZSDS|RP80|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114	intraflagellar transport 140	protein-coding
65091	chr14	39628101	39628380	+	0	NA	Intergenic	Intergenic	-195740	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
61099	chr13	48429271	48429430	+	0	NA	intron (NM_005767, intron 1 of 6)	7SLRNA|srpRNA|srpRNA	-2442	NM_001377317	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
220875	chr8	103419051	103419150	+	0	NA	intron (NM_015420, intron 1 of 10)	AluSc8|SINE|Alu	3714	NM_015420	25879		NM_015420	ENSG00000164934	DCAF13	GM83|HSPC064|Sof1|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
187516	chr5	142420751	142421050	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	95607	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
10554	chr1	67142701	67143400	+	0	NA	Intergenic	MIRb|SINE|MIR	-8080	NR_075077	400757		NM_001013674	ENSG00000203963	C1orf141	-	chromosome 1 open reading frame 141	protein-coding
176917	chr4	102810921	102811680	+	0	NA	intron (NM_181893, intron 1 of 6)	AluJo|SINE|Alu	14560	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
29738	chr10	72110971	72111130	+	0	NA	intron (NM_001369102, intron 10 of 11)	intron (NM_001369102, intron 10 of 11)	-22018	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
33420	chr10	118720871	118721350	+	0	NA	intron (NM_153810, intron 3 of 8)	intron (NM_153810, intron 3 of 8)	33860	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
203144	chr6	166955701	166957980	+	0	NA	promoter-TSS (NM_003730)	promoter-TSS (NM_003730)	-290	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
154835	chr22	37070001	37070200	+	0	NA	intron (NM_153609, intron 15 of 17)	intron (NM_153609, intron 15 of 17)	18364	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
198074	chr6	90238651	90238980	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	58028	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
184569	chr5	102799871	102800030	+	0	NA	intron (NM_001364588, intron 1 of 24)	intron (NM_001364588, intron 1 of 24)	-8248	NM_001364582	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
173979	chr4	26132671	26132830	+	0	NA	Intergenic	Intergenic	-30708	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
147685	chr20	62311101	62311700	+	0	NA	intron (NM_005560, intron 72 of 79)	intron (NM_005560, intron 72 of 79)	8403	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
5279	chr1	25096901	25097330	+	0	NA	Intergenic	L1MEf|LINE|L1	73612	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
29569	chr10	71688451	71689300	+	0	NA	intron (NM_001171931, intron 18 of 24)	intron (NM_001171931, intron 18 of 24)	30903	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
79191	chr16	324651	325780	+	0	NA	intron (NM_181050, intron 2 of 9)	CpG	27508	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
45154	chr11	117202871	117203600	+	0	NA	intron (NM_003186, intron 2 of 4)	intron (NM_003186, intron 2 of 4)	-1321	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
119801	chr19	41333001	41333600	+	0	NA	intron (NM_000660, intron 5 of 6)	AluSx3|SINE|Alu	20622	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
170246	chr3	184232371	184232530	+	0	NA	promoter-TSS (NM_001320373)	promoter-TSS (NM_001320373)	-966	NM_001320373	90113		NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding
129854	chr2	72921651	72922080	+	0	NA	intron (NM_004097, intron 1 of 2)	intron (NM_004097, intron 1 of 2)	4346	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
145395	chr20	41409151	41409250	+	0	NA	intron (NM_032221, intron 36 of 36)	intron (NM_032221, intron 36 of 36)	-42382	NM_052846	90187		NM_052846	ENSG00000183798	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
147418	chr20	58888151	58889780	+	0	NA	promoter-TSS (NR_126334)	promoter-TSS (NR_126334)	-155	NR_126334	101927932		NR_126334		LOC101927932	-	uncharacterized LOC101927932	ncRNA
181000	chr5	35824971	35825530	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-31641	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
100788	chr17	64018171	64018900	+	0	NA	intron (NM_001099788, intron 1 of 5)	L1M5|LINE|L1	2098	NM_001099789	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
117768	chr19	29695771	29696130	+	0	NA	Intergenic	Intergenic	19106	NM_001282929	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
85631	chr16	54936321	54937030	+	0	NA	Intergenic	CpG	5476	NM_001252197	10265		NM_005853	ENSG00000176842	IRX5	HMMS|IRX-2a|IRXB2	iroquois homeobox 5	protein-coding
196732	chr6	45311721	45311980	+	0	NA	intron (NM_001350329, intron 2 of 10)	L1PB1|LINE|L1	-16467	NM_001015051	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
81639	chr16	10918471	10919030	+	0	NA	intron (NM_001379334, intron 16 of 19)	MIRc|SINE|MIR	23718	NM_014015	28955		NM_014015	ENSG00000182108	DEXI	MYLE	Dexi homolog	protein-coding
184680	chr5	108380411	108381700	+	0	NA	exon (NM_001163315, exon 1 of 9)	exon (NM_001163315, exon 1 of 9)	1043	NM_001163315	64839		NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
10042	chr1	58541101	58541530	+	0	NA	intron (NM_145243, intron 1 of 8)	AluSz|SINE|Alu	5411	NM_001379461	1600		NM_021080	ENSG00000173406	DAB1	SCA37	DAB adaptor protein 1	protein-coding
183353	chr5	77031871	77032430	+	0	NA	intron (NM_018046, intron 1 of 13)	intron (NM_018046, intron 1 of 13)	1746	NM_018046	55109		NM_013303	ENSG00000164252	AGGF1	GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q	angiogenic factor with G-patch and FHA domains 1	protein-coding
52373	chr12	55687771	55688130	+	0	NA	intron (NM_001367993, intron 25 of 25)	intron (NM_001367993, intron 25 of 25)	6214	NM_152637	196410		NM_152637	ENSG00000170439	TMT1B	ALDI|METTL7B	thiol methyltransferase 1B	protein-coding
86496	chr16	67031571	67031930	+	0	NA	intron (NM_001368707, intron 2 of 4)	AluSz|SINE|Alu	2601	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
83758	chr16	28708871	28709230	+	0	NA	intron (NM_001199142, intron 1 of 20)	(AT)n|Simple_repeat|Simple_repeat	-2367	NM_001037808	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
90189	chr17	384951	386580	+	0	NA	Intergenic	CpG	-24560	NM_001013672	400566		NM_001013672	ENSG00000187624	LIAT1	C17orf97|CK20	ligand of ATE1	protein-coding
199228	chr6	111815671	111815980	+	0	NA	intron (NM_002037, intron 2 of 13)	AluJo|SINE|Alu	-55908	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
48174	chr12	7972211	7973000	+	0	NA	Intergenic	Intergenic	-36418	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
198938	chr6	110476071	110476230	+	0	NA	intron (NM_033125, intron 1 of 7)	CpG	463	NM_033125	85413		NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
222879	chr8	142772121	142772380	+	0	NA	3' UTR (NM_001356370, exon 4 of 4)	3' UTR (NM_001356370, exon 4 of 4)	-2422	NM_001356372	432355		NM_177458	ENSG00000283992	SLURP2	SLURP-2	secreted LY6/PLAUR domain containing 2	protein-coding
87293	chr16	70064301	70065300	+	0	NA	intron (NR_003610, intron 1 of 25)	intron (NR_003610, intron 1 of 25)	1148	NR_003610	283970		NM_199134	ENSG00000196696	PDXDC2P-NPIPB14P	-	PDXDC2P-NPIPB14P readthrough, transcribed pseudogene	pseudo
19883	chr1	183633681	183634350	+	0	NA	intron (NM_001270439, intron 1 of 3)	intron (NM_001270439, intron 1 of 3)	1768	NM_005717	10092		NM_005717	ENSG00000162704	ARPC5	ARC16|IMD113|dJ127C7.3|p16-Arc	actin related protein 2/3 complex subunit 5	protein-coding
62630	chr13	100721921	100722230	+	0	NA	intron (NR_047687, intron 1 of 7)	intron (NR_047687, intron 1 of 7)	13750	NR_047687	100885778		NR_047687	ENSG00000233009	NALCN-AS1	-	NALCN antisense RNA 1	ncRNA
148267	chr20	63685251	63685900	+	0	NA	exon (NM_001283010, exon 14 of 34)	exon (NM_001283010, exon 14 of 34)	-11077	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
191377	chr6	7387771	7388550	+	0	NA	intron (NM_001170692, intron 1 of 13)	intron (NM_001170692, intron 1 of 13)	1582	NM_205864	285782		NM_175745	ENSG00000164304	CAGE1	CT3|CT95|CTAG3|bA69L16.7	cancer antigen 1	protein-coding
215005	chr7	152375451	152375550	+	0	NA	intron (NM_170606, intron 1 of 58)	AluSx1|SINE|Alu	60503	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
38469	chr11	45798851	45799350	+	0	NA	Intergenic	Intergenic	-4972	NM_001145266	55343		NM_018389	ENSG00000181830	SLC35C1	CDG2C|FUCT1	solute carrier family 35 member C1	protein-coding
214403	chr7	149798401	149798800	+	0	NA	intron (NR_163594, intron 46 of 102)	intron (NR_163594, intron 46 of 102)	22558	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
82065	chr16	13923721	13924230	+	0	NA	intron (NM_005236, intron 2 of 10)	intron (NM_005236, intron 2 of 10)	3821	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
52425	chr12	55817051	55818930	+	0	NA	promoter-TSS (NR_026722)	promoter-TSS (NR_026722)	-51	NM_014182	29095		NM_014182	ENSG00000123353	ORMDL2	HSPC160|MST095|MSTP095|adoplin-2	ORMDL sphingolipid biosynthesis regulator 2	protein-coding
160140	chr3	20062601	20062800	+	0	NA	intron (NM_003884, intron 1 of 17)	AluSx|SINE|Alu	22254	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
70286	chr14	101759971	101761100	+	0	NA	promoter-TSS (NM_001352914)	promoter-TSS (NM_001352914)	-38	NM_001352914	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
152337	chr22	20423721	20424250	+	0	NA	TTS (NM_153334)	TTS (NM_153334)	13840	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
183059	chr5	73497021	73497280	+	0	NA	Intergenic	Intergenic	-1275	NM_001037637	689		NM_001207	ENSG00000145741	BTF3	BETA-NAC|BTF3a|BTF3b|NACB	basic transcription factor 3	protein-coding
11937	chr1	93758571	93759330	+	0	NA	intron (NR_148965, intron 1 of 1)	intron (NR_148965, intron 1 of 1)	16433	NR_148965	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
76371	chr15	74600701	74600900	+	0	NA	Intergenic	Intergenic	-7572	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
225477	chr9	35609571	35610280	+	0	NA	TTS (NM_001782)	TTS (NM_001782)	1831	NR_039813	100616214		NR_039813	ENSG00000263892	MIR4667	mir-4667	microRNA 4667	ncRNA
193891	chr6	31598221	31599130	+	0	NA	Intergenic	Intergenic	-5669	NM_001145466	259197		NM_147130	ENSG00000204475	NCR3	1C7|CD337|LY117|MALS|NKp30	natural cytotoxicity triggering receptor 3	protein-coding
171670	chr3	197712021	197714150	+	0	NA	intron (NM_014687, intron 2 of 19)	AluSq2|SINE|Alu	23819	NM_014687	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
121592	chr19	47348771	47350480	+	0	NA	intron (NM_014681, intron 1 of 16)	CpG	310	NM_014681	9704		NM_014681	ENSG00000134815	DHX34	DDX34|HRH1	DExH-box helicase 34	protein-coding
70073	chr14	100151701	100152200	+	0	NA	intron (NM_206918, intron 1 of 2)	intron (NM_206918, intron 1 of 2)	7695	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
154769	chr22	36522721	36522980	+	0	NA	intron (NR_156418, intron 6 of 14)	MSTB2|LTR|ERVL-MaLR	6316	NM_003753	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
60277	chr13	40617971	40618500	+	0	NA	intron (NM_002015, intron 1 of 2)	AluJb|SINE|Alu	48406	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
144499	chr20	35664501	35666330	+	0	NA	promoter-TSS (NM_001198863)	promoter-TSS (NM_001198863)	-515	NM_152927	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
82090	chr16	14308271	14308430	+	0	NA	promoter-TSS (NR_029854)	promoter-TSS (NR_029854)	-935	NR_029854	100126355		NR_029854	ENSG00000199130	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a|mir-365a	microRNA 365a	ncRNA
3376	chr1	15683871	15685530	+	0	NA	intron (NM_015164, intron 1 of 19)	CpG	380	NM_015164	23207		NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology and RUN domain containing M2	protein-coding
7115	chr1	32155471	32155830	+	0	NA	intron (NM_012316, intron 2 of 13)	intron (NM_012316, intron 2 of 13)	-24025	NM_175852	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
76902	chr15	78000021	78000650	+	0	NA	intron (NM_144572, intron 12 of 12)	intron (NM_144572, intron 12 of 12)	-6110	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
109336	chr19	603821	604800	+	0	NA	intron (NM_001194, intron 2 of 7)	intron (NM_001194, intron 2 of 7)	14429	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
77637	chr15	85480401	85480600	+	0	NA	intron (NM_007200, intron 1 of 36)	MIRb|SINE|MIR	99897	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
117796	chr19	29846671	29846830	+	0	NA	Intergenic	AluSx|SINE|Alu	34759	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
157716	chr22	46434121	46434380	+	0	NA	intron (NM_001378328, intron 4 of 34)	intron (NM_001378328, intron 4 of 34)	98536	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
99947	chr17	57354701	57355300	+	0	NA	intron (NM_170721, intron 4 of 9)	MLT1K|LTR|ERVL-MaLR	97981	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
235887	chrX	52184621	52185250	+	0	NA	promoter-TSS (NM_001272063)	promoter-TSS (NM_001272063)	47	NM_001272063	728239		NM_001098800	ENSG00000154545	MAGED4	MAGE-D4|MAGE-E1|MAGE1|MAGEE1	MAGE family member D4	protein-coding
105889	chr18	3268171	3268830	+	0	NA	intron (NM_001144945, intron 1 of 3)	intron (NM_001144945, intron 1 of 3)	5781	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
19721	chr1	181101951	181102400	+	0	NA	Intergenic	Intergenic	13475	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
185372	chr5	127595771	127595930	+	0	NA	Intergenic	Intergenic	-53171	NM_001048252	613212		NM_001048252	ENSG00000205279	CTXN3	KABE	cortexin 3	protein-coding
6433	chr1	28201471	28202030	+	0	NA	intron (NR_159454, intron 9 of 9)	AluSq|SINE|Alu	-7814	NM_001164721	5724		NM_000952	ENSG00000169403	PTAFR	PAFR	platelet activating factor receptor	protein-coding
11455	chr1	89864271	89864430	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	42411	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
216956	chr8	22997871	22998030	+	0	NA	intron (NM_001374791, intron 1 of 9)	intron (NM_001374791, intron 1 of 9)	1178	NM_001374791	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
168370	chr3	141901971	141902330	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	25507	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
98001	chr17	45305451	45305750	+	0	NA	intron (NM_003954, intron 1 of 15)	AluSz6|SINE|Alu	11420	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
102487	chr17	75747601	75748750	+	0	NA	intron (NM_001005619, intron 25 of 38)	AluJr|SINE|Alu	17017	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
232489	chr9	136254351	136254750	+	0	NA	exon (NM_001378188, exon 26 of 26)	exon (NM_001378188, exon 26 of 26)	-8738	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
168845	chr3	152270901	152271200	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-1424	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
134091	chr2	131671721	131671980	+	0	NA	Intergenic	Intergenic	-10649	NR_149016	29798		NM_013310	ENSG00000287151	LINC03124	C2orf27|C2orf27A|C2orf27B	long intergenic non-protein coding RNA 3124	ncRNA
116100	chr19	17289521	17290630	+	0	NA	Intergenic	AluSx1|SINE|Alu	8174	NM_001278444	126549		NM_152363	ENSG00000160117	ANKLE1	ANKRD41|LEM3|LEMD6	ankyrin repeat and LEM domain containing 1	protein-coding
74973	chr15	63841821	63842930	+	0	NA	Intergenic	Intergenic	-8427	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
61127	chr13	48528771	48529130	+	0	NA	intron (NM_001268, intron 1 of 14)	intron (NM_001268, intron 1 of 14)	4130	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
216606	chr8	22056051	22056150	+	0	NA	promoter-TSS (NM_001323401)	promoter-TSS (NM_001323401)	-714	NM_001323395	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
140336	chr2	232544621	232545080	+	0	NA	exon (NM_005199, exon 11 of 12)	exon (NM_005199, exon 11 of 12)	5158	NM_005199	1146		NM_005199	ENSG00000196811	CHRNG	ACHRG	cholinergic receptor nicotinic gamma subunit	protein-coding
159486	chr3	14174521	14174780	+	0	NA	intron (NM_001354729, intron 1 of 15)	L1ME4c|LINE|L1	3951	NR_148951	7508		NM_004628	ENSG00000154767	XPC	RAD4|XP3|XPCC|p125	XPC complex subunit, DNA damage recognition and repair factor	protein-coding
103129	chr17	77387621	77387880	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	9304	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
174271	chr4	38160551	38161530	+	0	NA	Intergenic	L2c|LINE|L2	41086	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
233127	chr9	137145901	137146700	+	0	NA	intron (NM_007327, intron 3 of 19)	intron (NM_007327, intron 3 of 19)	7146	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
182133	chr5	56153751	56154250	+	0	NA	intron (NM_024669, intron 6 of 11)	AluY|SINE|Alu	79330	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
130099	chr2	74515901	74516700	+	0	NA	3' UTR (NM_016170, exon 3 of 3)	3' UTR (NM_016170, exon 3 of 3)	1850	NM_016170	3196		NM_001534	ENSG00000115297	TLX2	HOX11L1|NCX	T cell leukemia homeobox 2	protein-coding
65321	chr14	50110721	50110980	+	0	NA	intron (NM_001040662, intron 4 of 4)	L1MB2|LINE|L1	5722	NM_001040662	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
200097	chr6	130190821	130191300	+	0	NA	intron (NM_001258275, intron 7 of 13)	intron (NM_001258275, intron 7 of 13)	24825	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
61329	chr13	50526901	50527400	+	0	NA	intron (NR_125753, intron 1 of 2)	intron (NR_125753, intron 1 of 2)	299	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
123465	chr19	54156771	54157400	+	0	NA	intron (NM_024316, intron 2 of 3).2	intron (NM_024316, intron 2 of 3).2	2636	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
24424	chr1	243507171	243507630	+	0	NA	intron (NM_005465, intron 13 of 13)	intron (NM_005465, intron 13 of 13)	161224	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
101038	chr17	64796071	64796230	+	0	NA	intron (NR_024386, intron 7 of 10)	intron (NR_024386, intron 7 of 10)	-14151	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
170279	chr3	184308651	184309680	+	0	NA	TTS (NM_001278708)	TTS (NM_001278708)	-5330	NM_001194947	1981		NM_004953	ENSG00000114867	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma 1	protein-coding
235381	chrX	44997351	44997650	+	0	NA	intron (NM_001291416, intron 4 of 28)	LTR1A2|LTR|ERV1	124312	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
121747	chr19	47746951	47747050	+	0	NA	exon (NM_015710, exon 2 of 13)	exon (NM_015710, exon 2 of 13)	1454	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
37924	chr11	34174051	34175030	+	0	NA	intron (NM_145804, intron 3 of 16)	CpG	68911	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
109491	chr19	821871	822030	+	0	NA	promoter-TSS (NM_024888)	promoter-TSS (NM_024888)	2	NM_024888	79948		NM_024888	ENSG00000129951	PLPPR3	LPPR3|LPR3|PRG-2|PRG2	phospholipid phosphatase related 3	protein-coding
7072	chr1	32017771	32018030	+	0	NA	intron (NR_073498, intron 1 of 8)	AluSp|SINE|Alu	4032	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
29820	chr10	72315171	72315530	+	0	NA	Intergenic	Intergenic	39569	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
106563	chr18	21699451	21699780	+	0	NA	intron (NM_138340, intron 3 of 8)	MLT1H|LTR|ERVL-MaLR	5159	NM_001308256	171586		NM_138340	ENSG00000158201	ABHD3	LABH3	abhydrolase domain containing 3, phospholipase	protein-coding
237691	chrX	124366701	124367300	+	0	NA	intron (NM_002351, intron 2 of 3)	intron (NM_002351, intron 2 of 3)	20437	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
109760	chr19	1120901	1121100	+	0	NA	intron (NM_001100122, intron 8 of 28).2	AluSg|SINE|Alu	11221	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
149294	chr21	28793071	28793250	+	0	NA	Intergenic	Intergenic	92207	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
130142	chr2	74845271	74845730	+	0	NA	intron (NM_001371525, intron 1 of 17)	intron (NM_001371525, intron 1 of 17)	10330	NM_001371525	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
63184	chr13	113733071	113733230	+	0	NA	intron (NM_002929, intron 6 of 6)	intron (NM_002929, intron 6 of 6)	17939	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
173946	chr4	25860871	25861200	+	0	NA	intron (NM_001297592, intron 1 of 23)	intron (NM_001297592, intron 1 of 23)	1953	NM_015187	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
115539	chr19	15463621	15465200	+	0	NA	intron (NM_022904, intron 1 of 17)	intron (NM_022904, intron 1 of 17)	134	NM_022904	64926		NM_022904	ENSG00000105122	RASAL3	-	RAS protein activator like 3	protein-coding
140517	chr2	233213701	233214180	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-37631	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
57662	chr12	122731771	122732530	+	0	NA	Intergenic	AluSz|SINE|Alu	-1306	NM_032554	27198		NM_032554	ENSG00000196917	HCAR1	FKSG80|GPR104|GPR81|HCA1|LACR1|TA-GPCR|TAGPCR	hydroxycarboxylic acid receptor 1	protein-coding
128649	chr2	61429201	61430330	+	0	NA	intron (NM_014709, intron 1 of 79)	L1ME1|LINE|L1	-12388	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
12216	chr1	100402451	100402880	+	0	NA	intron (NM_001319210, intron 4 of 16)	MIR3|SINE|MIR	50159	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
142830	chr20	17508551	17509050	+	0	NA	intron (NM_001195, intron 5 of 7)	intron (NM_001195, intron 5 of 7)	22579	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
230992	chr9	129496601	129497930	+	0	NA	intron (NR_038955, intron 2 of 4)	intron (NR_038955, intron 2 of 4)	8605	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
138372	chr2	203993451	203993980	+	0	NA	Intergenic	MIR|SINE|MIR	56952	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123572	chr19	54452051	54453050	+	0	NA	intron (NM_001375640, intron 3 of 14).3	intron (NM_001375640, intron 3 of 14).3	2893	NM_001375640	114823		NM_052925	ENSG00000167615	LENG8	pp13842	leukocyte receptor cluster member 8	protein-coding
173690	chr4	15457371	15457780	+	0	NA	Intergenic	Intergenic	-12290	NM_020785	57545		NM_020785	ENSG00000048342	CC2D2A	COACH2|JBTS9|MKS6|RP93	coiled-coil and C2 domain containing 2A	protein-coding
140491	chr2	233192871	233193230	+	0	NA	intron (NM_001017915, intron 22 of 26).2	AluSz|SINE|Alu	-58521	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
83278	chr16	24030771	24031330	+	0	NA	intron (NM_212535, intron 3 of 16)	AluJo|SINE|Alu	-172066	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
150761	chr21	43787171	43787530	+	0	NA	Intergenic	Intergenic	-2227	NM_003683	8568		NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
95853	chr17	38826971	38827930	+	0	NA	Intergenic	AluSp|SINE|Alu	1612	NR_039880	100616416		NR_039880	ENSG00000274054	MIR4727	mir-4727	microRNA 4727	ncRNA
191871	chr6	15299201	15299930	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	50710	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
25164	chr10	5317721	5318130	+	0	NA	Intergenic	Intergenic	-46689	NR_149060	110806285		NR_149060	ENSG00000224034	LINC02561	-	long intergenic non-protein coding RNA 2561	ncRNA
71594	chr14	106537301	106538080	+	0	NA	Intergenic	Intergenic	55251	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
140760	chr2	234500271	234500800	+	0	NA	Intergenic	Intergenic	-3454	NM_001282431	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
100294	chr17	59753271	59753900	+	0	NA	intron (NM_001329397, intron 5 of 10)	intron (NM_001329397, intron 5 of 10)	45931	NM_001329401	81671		NM_030938	ENSG00000062716	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding
136701	chr2	181140051	181141480	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	16928	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
110410	chr19	1955851	1955950	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	-1351	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
47946	chr12	6837201	6838180	+	0	NA	intron (NM_014262, intron 11 of 14)	intron (NM_014262, intron 11 of 14)	-3235	NM_001297571	2784		NM_002075	ENSG00000111664	GNB3	CSNB1H|HG2D	G protein subunit beta 3	protein-coding
150490	chr21	42683571	42685380	+	0	NA	intron (NM_001001580, intron 1 of 13)	intron (NM_001001580, intron 1 of 13)	30723	NM_001001580	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
152516	chr22	20960321	20960900	+	0	NA	intron (NR_110537, intron 1 of 1)	FRAM|SINE|Alu	3518	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
112596	chr19	6716821	6718030	+	0	NA	intron (NM_000064, intron 4 of 40)	(TG)n|Simple_repeat|Simple_repeat	3225	NM_000064	718		NM_000064	ENSG00000125730	C3	AHUS5|ARMD9|ASP|C3a|C3b|CPAMD1|HEL-S-62p	complement C3	protein-coding
60757	chr13	44915851	44916380	+	0	NA	Intergenic	AluJr|SINE|Alu	73356	NM_012345	26747		NM_012345	ENSG00000083635	NUFIP1	NUFIP|Rsa1|bA540M5.1	nuclear FMR1 interacting protein 1	protein-coding
49559	chr12	26845101	26845530	+	0	NA	Intergenic	Intergenic	-12121	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
152831	chr22	21956271	21956430	+	0	NA	TTS (NM_001349852)	TTS (NM_001349852)	-3502	NM_014634	9647		NM_014634	ENSG00000100034	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent 1F	protein-coding
90387	chr17	1275621	1276460	+	0	NA	Intergenic	Intergenic	-3622	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
239519	chrY	56836621	56837450	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-117220	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
171124	chr3	195534351	195535500	+	0	NA	intron (NM_006241, intron 1 of 5)	Tigger2|DNA|TcMar-Tigger	8400	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
193397	chr6	30414021	30414550	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	69129	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
109517	chr19	843171	843630	+	0	NA	intron (NM_002777, intron 1 of 4)	intron (NM_002777, intron 1 of 4)	2401	NM_002777	5657		NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
88916	chr16	87817201	87817400	+	0	NA	Intergenic	MER41A|LTR|ERV1	17360	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
182716	chr5	68247521	68247780	+	0	NA	intron (NM_181523, intron 2 of 15)	AluJb|SINE|Alu	31894	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
135211	chr2	159133951	159134130	+	0	NA	intron (NM_001350063, intron 4 of 24)	intron (NM_001350063, intron 4 of 24)	-52795	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
8735	chr1	42689951	42690050	+	0	NA	intron (NM_004559, intron 2 of 7)	MIR3|SINE|MIR	6864	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
35048	chr11	589421	590280	+	0	NA	intron (NM_001286582, intron 4 of 17)	CpG	13380	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
34933	chr11	437121	437880	+	0	NA	intron (NM_001347882, intron 1 of 21)	intron (NM_001347882, intron 1 of 21)	4511	NM_001347882	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
1019	chr1	1862971	1863650	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	27777	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
207195	chr7	43630671	43630900	+	0	NA	TTS (NR_047701)	TTS (NR_047701)	47677	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
19130	chr1	171527071	171527480	+	0	NA	intron (NM_015172, intron 10 of 33)	AluSx1|SINE|Alu	41745	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
26236	chr10	14595171	14596230	+	0	NA	intron (NM_001282695, intron 2 of 5)	MIR|SINE|MIR	8701	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
187337	chr5	141655451	141655750	+	0	NA	intron (NM_022481, intron 31 of 32)	intron (NM_022481, intron 31 of 32)	-4182	NM_033449	89848		NM_033449	ENSG00000197948	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
27433	chr10	31754101	31754500	+	0	NA	Intergenic	Intergenic	154626	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
50548	chr12	47989721	47991000	+	0	NA	intron (NM_033150, intron 15 of 52)	intron (NM_033150, intron 15 of 52)	14116	NM_001844	1280		NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
59657	chr13	28495001	28495600	+	0	NA	promoter-TSS (NM_001159920)	promoter-TSS (NM_001159920)	-172	NM_001160030	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
171999	chr4	955151	955530	+	0	NA	intron (NM_032326, intron 8 of 10)	intron (NM_032326, intron 8 of 10)	18229	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
112568	chr19	6602651	6603200	+	0	NA	Intergenic	LTR9|LTR|ERV1	-11775	NM_001252	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
8462	chr1	40711471	40712050	+	0	NA	intron (NM_001308115, intron 1 of 9)	intron (NM_001308115, intron 1 of 9)	2394	NM_001308115	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
180561	chr5	14685501	14686130	+	0	NA	intron (NM_138348, intron 4 of 6)	intron (NM_138348, intron 4 of 6)	21097	NM_138348	90268		NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM|IMD107	OTU deubiquitinase with linear linkage specificity	protein-coding
228723	chr9	109117621	109118230	+	0	NA	intron (NM_032012, intron 1 of 17)	intron (NM_032012, intron 1 of 17)	2022	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
37368	chr11	16613421	16614130	+	0	NA	intron (NM_001367872, intron 2 of 16)	CpG	124702	NM_001367872	55553		NM_017508	ENSG00000110693	SOX6	HSSOX6|SOXD|TOLCAS	SRY-box transcription factor 6	protein-coding
98873	chr17	48540021	48540450	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-4116	NR_102279	100874362		NR_102279	ENSG00000230148	HOXB-AS1	HOXB3OS	HOXB cluster antisense RNA 1	ncRNA
4559	chr1	22048251	22048750	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-4209	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
22540	chr1	222443701	222443900	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	104304	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
119307	chr19	39843701	39844480	+	0	NA	intron (NM_001436, intron 1 of 8)	intron (NM_001436, intron 1 of 8)	2289	NM_001436	2091		NM_001436	ENSG00000105202	FBL	FIB|FLRN|Nop1|RNU3IP1	fibrillarin	protein-coding
210434	chr7	100093871	100094430	+	0	NA	promoter-TSS (NR_029510)	promoter-TSS (NR_029510)	-76	NR_029831	406900		NR_029831	ENSG00000208036	MIR106B	MIRN106B|mir-106b	microRNA 106b	ncRNA
70460	chr14	102060101	102060700	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	26644	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
69920	chr14	99519851	99520400	+	0	NA	intron (NM_001144995, intron 3 of 5)	intron (NM_001144995, intron 3 of 5)	38716	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
132095	chr2	101327601	101328770	+	0	NA	Intergenic	Intergenic	18735	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
219231	chr8	66917451	66918230	+	0	NA	intron (NM_173518, intron 14 of 14)	L1MB3|LINE|L1	4709	NR_002598	641648		NR_002598	ENSG00000254341	SNORD87	HBII-276|U87	small nucleolar RNA, C/D box 87	snoRNA
37677	chr11	27474601	27474800	+	0	NA	intron (NR_131169, intron 4 of 4)	AluSx1|SINE|Alu	-1910	NM_018490	55366		NM_018490	ENSG00000205213	LGR4	BNMD17|DPSL|GPR48	leucine rich repeat containing G protein-coupled receptor 4	protein-coding
30033	chr10	73799001	73799600	+	0	NA	non-coding (NR_160292, exon 22 of 27)	non-coding (NR_160292, exon 22 of 27)	2099	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
56366	chr12	113149271	113149950	+	0	NA	promoter-TSS (NM_001144872)	promoter-TSS (NM_001144872)	-248	NM_001144872	387885		NM_001144872	ENSG00000186710	CFAP73	CCDC42B|MIA2	cilia and flagella associated protein 73	protein-coding
167071	chr3	126991001	126991300	+	0	NA	intron (NM_032242, intron 1 of 30)	intron (NM_032242, intron 1 of 30)	2556	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
70108	chr14	100236951	100237050	+	0	NA	Intergenic	Intergenic	-2144	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
218921	chr8	60815521	60815780	+	0	NA	intron (NM_017780, intron 7 of 37)	intron (NM_017780, intron 7 of 37)	74391	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
126328	chr2	27360971	27361130	+	0	NA	Intergenic	AluSx|SINE|Alu	-4016	NM_001035521	2976		NM_001521	ENSG00000115207	GTF3C2	TF3C-beta|TFIIIC-BETA|TFIIIC110	general transcription factor IIIC subunit 2	protein-coding
36331	chr11	3878001	3878200	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	22038	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
54489	chr12	92058771	92059500	+	0	NA	intron (NR_132341, intron 1 of 4)	AluSz|SINE|Alu	82578	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
238973	chrX	155383771	155383930	+	0	NA	promoter-TSS (NR_036049).2	promoter-TSS (NR_036049).2	-652	NR_036259	100422985		NR_036259	ENSG00000221190	MIR1184-2	-	microRNA 1184-2	ncRNA
172275	chr4	1512901	1513730	+	0	NA	Intergenic	CpG	-106873	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
96232	chr17	39794371	39795380	+	0	NA	intron (NM_001257408, intron 2 of 6)	intron (NM_001257408, intron 2 of 6)	-16650	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
101974	chr17	74743251	74743650	+	0	NA	intron (NM_175738, intron 5 of 8)	intron (NM_175738, intron 5 of 8)	-5163	NR_037409	100500847		NR_037409	ENSG00000284186	MIR3615	mir-3615	microRNA 3615	ncRNA
153157	chr22	23780951	23781300	+	0	NA	intron (NR_133013, intron 5 of 7).2	intron (NR_133013, intron 5 of 7).2	-5841	NM_003073	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
130393	chr2	85317701	85317930	+	0	NA	TTS (NM_001206841)	TTS (NM_001206841)	10174	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
70801	chr14	103541021	103541800	+	0	NA	Intergenic	Intergenic	12214	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
204893	chr7	6080651	6082650	+	0	NA	Intergenic	CpG	-22421	NM_001134335	27102		NM_014413	ENSG00000086232	EIF2AK1	HCR|HRI|LEMSPAD|hHRI	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
70495	chr14	102097451	102097550	+	0	NA	intron (NM_001017963, intron 2 of 11)	intron (NM_001017963, intron 2 of 11)	-10456	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
55533	chr12	105328271	105328850	+	0	NA	Intergenic	MER90a|LTR|ERV1	-1543	NR_131986	105369954		NR_131986	ENSG00000257642	C12orf75-AS1	KCCAT198	C12orf75 antisense RNA 1	ncRNA
231272	chr9	130015221	130015750	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	27704	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
96454	chr17	40220951	40221050	+	0	NA	intron (NM_133264, intron 1 of 7)	AluY|SINE|Alu	1696	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
228624	chr9	105692671	105693080	+	0	NA	Intergenic	AluSc5|SINE|Alu	-1666	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
227432	chr9	89999371	90000280	+	0	NA	Intergenic	Intergenic	23710	NR_036253	100422963		NR_036253	ENSG00000263967	MIR4290	-	microRNA 4290	ncRNA
97598	chr17	44115421	44116300	+	0	NA	promoter-TSS (NR_136415)	promoter-TSS (NR_136415)	-52	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
222846	chr8	142618201	142618400	+	0	NA	Intergenic	Intergenic	-3821	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
125553	chr2	15593651	15593950	+	0	NA	intron (NM_004939, intron 1 of 25)	AluSc8|SINE|Alu	1932	NM_004939	1653		NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding
91140	chr17	3750001	3750200	+	0	NA	intron (NM_002208, intron 16 of 30)	MIR|SINE|MIR	26197	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
82320	chr16	15702671	15702830	+	0	NA	TTS (NM_001040113)	TTS (NM_001040113)	52505	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
107945	chr18	58124421	58124680	+	0	NA	intron (NM_001144964, intron 1 of 30)	L2b|LINE|L2	-24770	NM_001144968	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
86285	chr16	58607551	58608530	+	0	NA	intron (NM_206999, intron 1 of 30)	AluSz6|SINE|Alu	21786	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
206637	chr7	36120251	36120550	+	0	NA	Intergenic	L1PA6|LINE|L1	25090	NR_108089	101928618		NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
148139	chr20	63486671	63487430	+	0	NA	TTS (NM_001958)	TTS (NM_001958)	12033	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
136639	chr2	179253301	179253500	+	0	NA	intron (NM_178123, intron 1 of 17)	L1MD3|LINE|L1	11432	NM_178123	91404		NM_178123	ENSG00000187231	SESTD1	SOLO	SEC14 and spectrin domain containing 1	protein-coding
173842	chr4	21465321	21465400	+	0	NA	promoter-TSS (NR_107018)	promoter-TSS (NR_107018)	-602	NR_107018	102465859		NR_107018	ENSG00000283281	MIR7978	hsa-mir-7978	microRNA 7978	ncRNA
74479	chr15	59919171	59919800	+	0	NA	Intergenic	Intergenic	-84826	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
100439	chr17	61139201	61139980	+	0	NA	intron (NM_001353144, intron 24 of 25)	intron (NM_001353144, intron 24 of 25)	228114	NR_136397	101927855		NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
75446	chr15	65820501	65820800	+	0	NA	Intergenic	Intergenic	-28357	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
139304	chr2	219526151	219526500	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	11843	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
230437	chr9	128156871	128157700	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-2980	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
105767	chr18	2787921	2788180	+	0	NA	intron (NM_015295, intron 45 of 47)	intron (NM_015295, intron 45 of 47)	-58956	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
138695	chr2	213099171	213099730	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	50987	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
131498	chr2	96534301	96534530	+	0	NA	Intergenic	L1ME3G|LINE|L1	-2109	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
235769	chrX	49053071	49054630	+	0	NA	5' UTR (NM_001271836, exon 1 of 10)	5' UTR (NM_001271836, exon 1 of 10)	278	NM_001271836	90060		NM_033626	ENSG00000147144	CCDC120	JM11	coiled-coil domain containing 120	protein-coding
146195	chr20	48770821	48771530	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	56824	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
27106	chr10	27542501	27543100	+	0	NA	TTS (NM_021252)	TTS (NM_021252)	38496	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
166477	chr3	114270151	114270650	+	0	NA	Intergenic	L1PB1|LINE|L1	-23628	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
197573	chr6	79777751	79778830	+	0	NA	Intergenic	Intergenic	33956	NR_131786	89758		NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
212295	chr7	123824471	123824650	+	0	NA	Intergenic	Intergenic	10421	NR_002731	26062		NR_002731		HYAL6P	HYAL6|HYALP1	hyaluronidase 6, pseudogene	pseudo
139031	chr2	218412851	218413180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6108	NM_007127	7429		NM_007127	ENSG00000127831	VIL1	D2S1471|VIL	villin 1	protein-coding
163419	chr3	50555571	50555730	+	0	NA	Intergenic	Intergenic	12097	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
85511	chr16	50771471	50771630	+	0	NA	intron (NM_015247, intron 7 of 19)	L1MB7|LINE|L1	29135	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
81519	chr16	9050501	9050700	+	0	NA	Intergenic	Intergenic	-41044	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
222024	chr8	130096871	130097430	+	0	NA	intron (NM_001362924, intron 25 of 30)	AluSz|SINE|Alu	-12382	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
70261	chr14	101714951	101716000	+	0	NA	Intergenic	Intergenic	-14962	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
66367	chr14	61470301	61470650	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	99719	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
111072	chr19	3163271	3164130	+	0	NA	TTS (NM_002068)	TTS (NM_002068)	-8525	NR_110670	100996351		NR_110670	ENSG00000267551	GNA15-DT	-	GNA15 divergent transcript	ncRNA
88846	chr16	87560451	87560880	+	0	NA	Intergenic	Intergenic	-41170	NR_073379	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
149439	chr21	31446201	31447000	+	0	NA	intron (NM_001353690, intron 1 of 27)	(GATGAA)n|Simple_repeat|Simple_repeat	-102246	NM_001353687	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
150389	chr21	42294401	42294800	+	0	NA	exon (NM_207174, exon 14 of 15)	exon (NM_207174, exon 14 of 15)	20809	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
120045	chr19	41991421	41991680	+	0	NA	intron (NM_001256214, intron 1 of 22)	intron (NM_001256214, intron 1 of 22)	1917	NM_001256213	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
122227	chr19	48988171	48988330	+	0	NA	intron (NR_027763, intron 1 of 14)	intron (NR_027763, intron 1 of 14)	5059	NR_027763	2997		NM_002103	ENSG00000104812	GYS1	GSY|GYS	glycogen synthase 1	protein-coding
22031	chr1	210340401	210341200	+	0	NA	intron (NM_001170580, intron 1 of 11).2	intron (NM_001170580, intron 1 of 11).2	11434	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
66678	chr14	63938321	63939280	+	0	NA	intron (NM_015180, intron 2 of 114)	L2a|LINE|L2	85796	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
192120	chr6	16742371	16742830	+	0	NA	intron (NR_152112, intron 1 of 1)	intron (NR_152112, intron 1 of 1)	17584	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
104396	chr17	81043401	81043800	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	8449	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
31760	chr10	97882601	97883000	+	0	NA	exon (NM_018058, exon 13 of 15)	exon (NM_018058, exon 13 of 15)	-6903	NR_162124	113839520		NR_162124		MIR3085	-	microRNA 3085	ncRNA
73150	chr15	41416321	41417950	+	0	NA	promoter-TSS (NM_015138)	promoter-TSS (NM_015138)	31	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
215011	chr7	152385571	152385930	+	0	NA	intron (NM_170606, intron 1 of 58)	L1MC5|LINE|L1	50253	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
186404	chr5	135397821	135399930	+	0	NA	intron (NM_004893, intron 1 of 8)	CpG	356	NM_138610	9555		NM_004893	ENSG00000113648	MACROH2A1	H2A.y|H2A/y|H2AF12M|H2AFY|MACROH2A1.1|mH2A1|macroH2A1.2	macroH2A.1 histone	protein-coding
105510	chr17	83106221	83106580	+	0	NA	Intergenic	MER66A|LTR|ERV1	25254	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
201795	chr6	149986421	149987630	+	0	NA	Intergenic	Intergenic	18119	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
69656	chr14	97975121	97975600	+	0	NA	intron (NR_152748, intron 1 of 2)	intron (NR_152748, intron 1 of 2)	2764	NR_015430	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
97102	chr17	42479671	42479830	+	0	NA	intron (NM_001378552, intron 8 of 20)	intron (NM_001378552, intron 8 of 20)	-15023	NR_049845	100847030		NR_049845	ENSG00000264314	MIR548AT	-	microRNA 548at	ncRNA
122343	chr19	49224921	49225350	+	0	NA	Intergenic	AluJo|SINE|Alu	67343	NM_001321283	54795		NM_017636	ENSG00000130529	TRPM4	EKVP6|LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
96045	chr17	39459551	39459850	+	0	NA	Intergenic	AluJr|SINE|Alu	-1786	NM_016507	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
200108	chr6	130198501	130199500	+	0	NA	intron (NM_001258275, intron 7 of 13)	intron (NM_001258275, intron 7 of 13)	16885	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
38963	chr11	47543051	47543730	+	0	NA	intron (NM_001376458, intron 1 of 13)	AluJr|SINE|Alu	9742	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
184706	chr5	109347251	109347750	+	0	NA	intron (NM_014819, intron 7 of 9)	LTR41|LTR|ERVL	-21131	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
45214	chr11	117843501	117844400	+	0	NA	intron (NM_001164831, intron 1 of 7)	intron (NM_001164831, intron 1 of 7)	-15861	NM_021603	486		NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
211979	chr7	112970951	112971050	+	0	NA	intron (NR_110162, intron 4 of 5)	intron (NR_110162, intron 4 of 5)	24643	NR_110162	101928036		NR_110162	ENSG00000234520	HRAT17	-	heart tissue-associated transcript 17	ncRNA
124523	chr2	191301	191780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	64800	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
31795	chr10	98341051	98341150	+	0	NA	Intergenic	L3|LINE|CR1	54207	NR_031619	100302133		NR_031619	ENSG00000284415	MIR1287	MIRN1287|hsa-mir-1287|mir-1287	microRNA 1287	ncRNA
230896	chr9	129231171	129231530	+	0	NA	Intergenic	Intergenic	-51066	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
147637	chr20	62159801	62160600	+	0	NA	intron (NM_001301778, intron 4 of 11)	intron (NM_001301778, intron 4 of 11)	16431	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
70592	chr14	102772121	102772900	+	0	NA	Intergenic	AluSz|SINE|Alu	-4939	NM_003300	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
154887	chr22	37149251	37151100	+	0	NA	promoter-TSS (NM_000878)	promoter-TSS (NM_000878)	-259	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
104368	chr17	81003521	81005250	+	0	NA	Intergenic	CpG	12544	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
4264	chr1	19652171	19652330	+	0	NA	intron (NM_001278166, intron 1 of 3)	intron (NM_001278166, intron 1 of 3)	4640	NM_001278166	4681		NM_005380	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	NBL1, DAN family BMP antagonist	protein-coding
10313	chr1	64878951	64879250	+	0	NA	exon (NM_001321853, exon 6 of 27)	exon (NM_001321853, exon 6 of 27)	87449	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
122049	chr19	48650401	48650800	+	0	NA	intron (NR_004401, intron 1 of 4)	AluJb|SINE|Alu	-4413	NR_136241	770		NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
25690	chr10	8830851	8831160	+	0	NA	Intergenic	Intergenic	-66984	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
152385	chr22	20523451	20523750	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	15553	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
154506	chr22	35699771	35700650	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-17662	NM_030642	80831		NM_030642	ENSG00000128313	APOL5	APOL-V|APOLV	apolipoprotein L5	protein-coding
205534	chr7	19705001	19705200	+	0	NA	TTS (NR_036101)	TTS (NR_036101)	336	NR_036101	100422967		NR_036101	ENSG00000265932	MIR3146	mir-3146	microRNA 3146	ncRNA
51058	chr12	49824801	49825000	+	0	NA	intron (NM_001368048, intron 1 of 13)	intron (NM_001368048, intron 1 of 13)	3513	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
232738	chr9	136644171	136645250	+	0	NA	Intergenic	Intergenic	-14146	NR_046367	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
115300	chr19	14668121	14668450	+	0	NA	intron (NM_001289158, intron 2 of 14)	MLT1C|LTR|ERVL-MaLR	6559	NM_001289159	84658		NM_032571	ENSG00000131355	ADGRE3	EMR3	adhesion G protein-coupled receptor E3	protein-coding
213670	chr7	140002301	140002600	+	0	NA	intron (NM_030984, intron 9 of 11)	intron (NM_030984, intron 9 of 11)	60501	NM_022750	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
92077	chr17	7524801	7525550	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-23883	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
50756	chr12	49020041	49020730	+	0	NA	3' UTR (NM_003482, exon 55 of 55)	3' UTR (NM_003482, exon 55 of 55)	-1609	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
16011	chr1	152037871	152038030	+	0	NA	promoter-TSS (NM_005620)	promoter-TSS (NM_005620)	-946	NM_005620	6282		NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
150083	chr21	37407721	37409550	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	-10270	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
113176	chr19	8399021	8399280	+	0	NA	intron (NM_004218, intron 1 of 4)	AluY|SINE|Alu	-8459	NR_038237	100507567		NR_038237	ENSG00000269386	RAB11B-AS1	MIR4999HG	RAB11B antisense RNA 1	ncRNA
122192	chr19	48936501	48936700	+	0	NA	intron (NM_014475, intron 3 of 6)	AluY|SINE|Alu	2901	NM_014475	27294		NM_014475	ENSG00000104808	DHDH	2DD|HUM2DD	dihydrodiol dehydrogenase	protein-coding
108191	chr18	63099901	63100380	+	0	NA	Intergenic	Intergenic	219629	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
25665	chr10	8365821	8366780	+	0	NA	Intergenic	Intergenic	-97995	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
119815	chr19	41345771	41347130	+	0	NA	intron (NM_000660, intron 2 of 6)	intron (NM_000660, intron 2 of 6)	7472	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
3142	chr1	12478401	12479700	+	0	NA	intron (NM_018156, intron 66 of 68)	intron (NM_018156, intron 66 of 68)	-28196	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
159895	chr3	16897121	16897930	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	12570	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
177724	chr4	122224351	122224650	+	0	NA	exon (NM_015312, exon 21 of 84)	exon (NM_015312, exon 21 of 84)	53897	NM_015312	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
7121	chr1	32175251	32176250	+	0	NA	3' UTR (NM_012316, exon 14 of 14)	3' UTR (NM_012316, exon 14 of 14)	-3925	NM_175852	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
186172	chr5	134194471	134195180	+	0	NA	3' UTR (NM_002715, exon 7 of 7)	3' UTR (NM_002715, exon 7 of 7)	-17792	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
109203	chr19	456121	456380	+	0	NA	intron (NM_012435, intron 1 of 12)	intron (NM_012435, intron 1 of 12)	4746	NM_012435	25759		NM_012435	ENSG00000129946	SHC2	SCK|SHCB|SLI	SHC adaptor protein 2	protein-coding
23096	chr1	226666901	226667700	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	7768	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
227997	chr9	95506501	95507200	+	0	NA	intron (NM_001083603, intron 1 of 23)	CpG-28534	349	NM_001083607	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
230868	chr9	129172801	129173300	+	0	NA	Intergenic	Intergenic	5211	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
131466	chr2	96390921	96391700	+	0	NA	Intergenic	MER54B|LTR|ERVL	55544	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
102435	chr17	75674721	75675630	+	0	NA	intron (NR_126036, intron 3 of 9)	AluSq4|SINE|Alu	7837	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
188205	chr5	150692471	150692630	+	0	NA	intron (NM_018047, intron 10 of 10)	Charlie10a|DNA|hAT-Charlie	8512	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
197240	chr6	69794821	69795080	+	0	NA	intron (NM_018368, intron 1 of 15)	Charlie1a|DNA|hAT-Charlie	1516	NM_001363722	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
127147	chr2	37713251	37713600	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-40476	NM_001371569	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
222942	chr8	143028351	143028780	+	0	NA	Intergenic	Intergenic	10036	NM_002346	4061		NM_002346	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	lymphocyte antigen 6 family member E	protein-coding
208941	chr7	74138471	74138830	+	0	NA	Intergenic	LTR28|LTR|ERV1	-35706	NM_031992	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
84859	chr16	31143671	31144030	+	0	NA	intron (NM_173502, intron 6 of 14)	intron (NM_173502, intron 6 of 14)	6216	NM_173502	146547		NM_173502	ENSG00000178226	PRSS36	-	serine protease 36	protein-coding
47816	chr12	6587271	6587430	+	0	NA	intron (NM_001273, intron 25 of 39)	intron (NM_001273, intron 25 of 39)	-5741	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
12028	chr1	97525671	97525930	+	0	NA	intron (NM_000110, intron 12 of 22)	intron (NM_000110, intron 12 of 22)	-271121	NR_046591	100873933		NR_046591	ENSG00000235777	DPYD-AS2	-	DPYD antisense RNA 2	ncRNA
77517	chr15	84683971	84684530	+	0	NA	intron (NM_001271921, intron 2 of 4)	THE1B|LTR|ERVL-MaLR	-26051	NM_021077	4828		NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
44340	chr11	102419801	102420630	+	0	NA	intron (NM_052932, intron 2 of 4)	LTR33|LTR|ERVL	32550	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
210299	chr7	99456621	99456880	+	0	NA	3' UTR (NM_001318162, exon 8 of 8)	3' UTR (NM_001318162, exon 8 of 8)	9417	NM_001198879	100526740		NM_001198879	ENSG00000248919	ATP5MF-PTCD1	ATP5J2-PTCD1	ATP5MF-PTCD1 readthrough	protein-coding
126757	chr2	30240521	30241000	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	9226	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
117925	chr19	33080571	33081900	+	0	NA	promoter-TSS (NM_018025)	promoter-TSS (NM_018025)	54	NM_018025	55094		NM_018025	ENSG00000076650	GPATCH1	ECGP|GPATC1	G-patch domain containing 1	protein-coding
63685	chr14	21085221	21085480	+	0	NA	intron (NM_001278530, intron 18 of 22)	intron (NM_001278530, intron 18 of 22)	13305	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
216780	chr8	22508851	22509150	+	0	NA	intron (NM_005605, intron 4 of 13)	intron (NM_005605, intron 4 of 13)	-42927	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
235835	chrX	49754221	49754500	+	0	NA	Intergenic	Intergenic	-58376	NM_003785	8712		NM_003785	ENSG00000068985	PAGE1	AL5|CT16.3|GAGE-9|GAGEB1|PAGE-1	PAGE family member 1	protein-coding
219583	chr8	79770151	79770530	+	0	NA	non-coding (NR_110954, exon 6 of 6)	non-coding (NR_110954, exon 6 of 6)	2198	NR_125410	101927067		NR_125410	ENSG00000272138	LINC01607	-	long intergenic non-protein coding RNA 1607	ncRNA
62510	chr13	99465371	99465530	+	0	NA	Intergenic	Intergenic	33856	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
45722	chr11	119096951	119097250	+	0	NA	intron (NM_001382, intron 8 of 8)	intron (NM_001382, intron 8 of 8)	-1635	NM_002105	3014		NM_002105	ENSG00000188486	H2AX	H2A.X|H2A/X|H2AFX	H2A.X variant histone	protein-coding
93092	chr17	17661171	17661330	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	16438	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
177623	chr4	121179701	121180050	+	0	NA	intron (NM_001128843, intron 3 of 12)	intron (NM_001128843, intron 3 of 12)	-15554	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
162993	chr3	49722521	49722780	+	0	NA	exon (NM_013334, exon 5 of 8)	exon (NM_013334, exon 5 of 8)	1301	NM_021971	29925		NM_013334	ENSG00000173540	GMPPB	LGMDR19|MDDGA14|MDDGB14|MDDGC14	GDP-mannose pyrophosphorylase B	protein-coding
198829	chr6	109092451	109092850	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	2196	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
140203	chr2	231693751	231694050	+	0	NA	Intergenic	Intergenic	-14625	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
9314	chr1	46527901	46528630	+	0	NA	Intergenic	Intergenic	7250	NM_001357063	105378696		NM_001357063	ENSG00000282881	TMEM275	-	transmembrane protein 275	protein-coding
80700	chr16	3062571	3062930	+	0	NA	Intergenic	AluSz|SINE|Alu	-2653	NM_001369591	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
99034	chr17	48870621	48871380	+	0	NA	Intergenic	Intergenic	-21787	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
199002	chr6	110960051	110960600	+	0	NA	intron (NM_138408, intron 2 of 5)	intron (NM_138408, intron 2 of 5)	1619	NM_138408	112495		NM_138408	ENSG00000155115	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC subunit 6	protein-coding
52522	chr12	56085151	56085580	+	0	NA	3' UTR (NM_001005915, exon 3 of 3)	3' UTR (NM_001005915, exon 3 of 3)	5200	NM_001982	2065		NM_001982	ENSG00000065361	ERBB3	ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|VSCN1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3	erb-b2 receptor tyrosine kinase 3	protein-coding
16640	chr1	155130401	155130850	+	0	NA	intron (NM_182685, intron 1 of 3)	intron (NM_182685, intron 1 of 3)	2749	NM_004428	1942		NM_004428	ENSG00000169242	EFNA1	B61|ECKLG|EFL1|EPLG1|GMAN|LERK-1|LERK1|TNFAIP4	ephrin A1	protein-coding
21875	chr1	207738201	207738640	+	0	NA	Intergenic	Intergenic	-13618	NM_002389	4179		NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding
51126	chr12	50105271	50105630	+	0	NA	intron (NM_001257199, intron 2 of 7)	intron (NM_001257199, intron 2 of 7)	1442	NM_005276	2819		NM_005276	ENSG00000167588	GPD1	GPD-C|GPDH-C|HTGTI	glycerol-3-phosphate dehydrogenase 1	protein-coding
181533	chr5	43068271	43068430	+	0	NA	promoter-TSS (NR_104651)	promoter-TSS (NR_104651)	-911	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
209833	chr7	89003771	89003930	+	0	NA	intron (NM_181646, intron 1 of 3)	intron (NM_181646, intron 1 of 3)	-208113	NM_152706	219557		NM_152706	ENSG00000164645	TEX47	C7orf62|DYBLUF	testis expressed 47	protein-coding
180636	chr5	16934271	16934430	+	0	NA	intron (NM_012334, intron 1 of 40)	Charlie24|DNA|hAT-Charlie	1938	NM_012334	4651		NM_012334	ENSG00000145555	MYO10	MyoX	myosin X	protein-coding
211946	chr7	112475901	112476850	+	0	NA	non-coding (NR_120333, exon 12 of 12)	non-coding (NR_120333, exon 12 of 12)	-4478	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
201822	chr6	150024821	150026730	+	0	NA	promoter-TSS (NM_130900)	promoter-TSS (NM_130900)	-243	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
186068	chr5	134086371	134087550	+	0	NA	Intergenic	Intergenic	-27721	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
54983	chr12	96330551	96330650	+	0	NA	intron (NM_002595, intron 2 of 16)	L1MB5|LINE|L1	69839	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
49080	chr12	14431401	14431600	+	0	NA	intron (NM_001286515, intron 2 of 12)	AluSc8|SINE|Alu	46219	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
156238	chr22	40389701	40389900	+	0	NA	intron (NM_001350047, intron 1 of 20)	AluSp|SINE|Alu	19206	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
214291	chr7	149076551	149076680	+	0	NA	intron (NM_152411, intron 2 of 3)	AluSx4|SINE|Alu	14103	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
6836	chr1	31026171	31026330	+	0	NA	intron (NM_014676, intron 3 of 21)	AluSx|SINE|Alu	39467	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
189522	chr5	173629721	173629980	+	0	NA	Intergenic	Intergenic	-13200	NM_138369	91272		NM_138369	ENSG00000145919	BOD1	FAM44B	biorientation of chromosomes in cell division 1	protein-coding
145672	chr20	44981901	44982480	+	0	NA	intron (NM_006282, intron 4 of 10)	AluJr|SINE|Alu	15678	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
213124	chr7	131332651	131333850	+	0	NA	intron (NM_001321316, intron 1 of 17)	AluJb|SINE|Alu	5374	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
174344	chr4	38693851	38693950	+	0	NA	intron (NM_016531, intron 4 of 5)	intron (NM_016531, intron 4 of 5)	-29272	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
27288	chr10	30384721	30385000	+	0	NA	Intergenic	LTR18B|LTR|ERVL	-12953	NR_120609	729668		NR_003524		GOLGA2P6	-	GOLGA2 pseudogene 6	pseudo
48675	chr12	10556851	10557580	+	0	NA	intron (NR_146456, intron 1 of 2)	intron (NR_146456, intron 1 of 2)	3836	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
12156	chr1	100267351	100267450	+	0	NA	intron (NM_003729, intron 2 of 10)	intron (NM_003729, intron 2 of 10)	1184	NM_003729	8634		NM_003729	ENSG00000137996	RTCA	RPC|RTC1|RTCD1	RNA 3'-terminal phosphate cyclase	protein-coding
158186	chr22	50230871	50231230	+	0	NA	intron (NM_020461, intron 3 of 24)	AluSz|SINE|Alu	13973	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
237538	chrX	120428371	120428530	+	0	NA	3' UTR (NM_001122606, exon 9 of 9)	3' UTR (NM_001122606, exon 9 of 9)	40846	NM_002294	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
135205	chr2	159092971	159093130	+	0	NA	intron (NM_001350064, intron 3 of 26)	intron (NM_001350064, intron 3 of 26)	-93785	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
50276	chr12	46358921	46359400	+	0	NA	3' UTR (NM_018976, exon 16 of 16)	3' UTR (NM_018976, exon 16 of 16)	13613	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
35583	chr11	1705871	1706450	+	0	NA	Intergenic	LTR8B|LTR|ERV1	8965	NM_001012416	440023		NM_001012416	ENSG00000205864	KRTAP5-6	KRTAP5.6	keratin associated protein 5-6	protein-coding
11552	chr1	91026651	91026950	+	0	NA	Intergenic	Intergenic	-4545	NM_032186	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
48714	chr12	10695221	10695600	+	0	NA	Intergenic	AluSc|SINE|Alu	-21358	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
72383	chr15	31372621	31373100	+	0	NA	3' UTR (NM_015995, exon 2 of 2)	3' UTR (NM_015995, exon 2 of 2)	46025	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
50083	chr12	44833221	44833480	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	42311	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
211690	chr7	106664971	106665230	+	0	NA	Intergenic	L1MDa|LINE|L1	-3942	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
11044	chr1	84991371	84991950	+	0	NA	intron (NM_001330647, intron 1 of 14)	intron (NM_001330647, intron 1 of 14)	5453	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
111196	chr19	3458671	3459030	+	0	NA	intron (NM_205843, intron 10 of 10)	intron (NM_205843, intron 10 of 10)	21675	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
151116	chr21	44880821	44882180	+	0	NA	Intergenic	Intergenic	-7597	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
27939	chr10	42073371	42073600	+	0	NA	Intergenic	Intergenic	294560	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
236181	chrX	65601201	65602030	+	0	NA	Intergenic	Intergenic	-49194	NR_033742	83957		NM_032033	ENSG00000227942	FRMD8P1	-	FERM domain containing 8 pseudogene 1	pseudo
172524	chr4	2289221	2289680	+	0	NA	intron (NM_020972, intron 8 of 12)	intron (NM_020972, intron 8 of 12)	-27341	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
56381	chr12	113174251	113175400	+	0	NA	intron (NM_024072, intron 9 of 19)	intron (NM_024072, intron 9 of 19)	10653	NM_024072	79039		NM_024072	ENSG00000123064	DDX54	DP97	DEAD-box helicase 54	protein-coding
215884	chr8	7886901	7887200	+	0	NA	Intergenic	Intergenic	5658	NM_001081551	414325		NM_001081551	ENSG00000176797	DEFB103A	BD-3|DEFB-3|DEFB103|DEFB3|HBD3|HBP-3|HBP3	defensin beta 103A	protein-coding
212413	chr7	128168251	128168350	+	0	NA	Intergenic	CpG	-39572	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
34439	chr10	132419301	132420100	+	0	NA	Intergenic	Intergenic	22500	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
99817	chr17	52409371	52409530	+	0	NA	intron (NR_146898, intron 1 of 3)	L1PA2|LINE|L1	18928	NR_146898	105371830		NR_146898	ENSG00000263317	LINC01982	-	long intergenic non-protein coding RNA 1982	ncRNA
185695	chr5	131996671	131997030	+	0	NA	intron (NM_001205250, intron 1 of 20)	L2b|LINE|L2	14808	NM_001205247	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
55613	chr12	106954451	106956590	+	0	NA	promoter-TSS (NM_152261)	promoter-TSS (NM_152261)	-202	NM_001319666	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
229470	chr9	121992601	121992900	+	0	NA	intron (NM_194252, intron 3 of 3)	intron (NM_194252, intron 3 of 3)	100558	NM_001139442	158135		NM_194252	ENSG00000175764	TTLL11	C9orf148|C9orf20|TTLL11-IT1|bA244O19.1	tubulin tyrosine ligase like 11	protein-coding
14812	chr1	146281221	146281680	+	0	NA	Intergenic	Intergenic	-16323	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
13662	chr1	116557871	116558230	+	0	NA	intron (NR_026665, intron 1 of 5)	intron (NR_026665, intron 1 of 5)	2061	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
67839	chr14	73942371	73942930	+	0	NA	exon (NM_152445, exon 4 of 9)	exon (NM_152445, exon 4 of 9)	-7284	NM_182480	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
74600	chr15	60575851	60576880	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	16161	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
59842	chr13	30460651	30461050	+	0	NA	3' UTR (NM_002128, exon 5 of 5)	3' UTR (NM_002128, exon 5 of 5)	3477	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
144380	chr20	35153071	35153330	+	0	NA	intron (NM_001355008, intron 5 of 14)	SVA_F|Retroposon|SVA	-5864	NR_026728	55741		NM_018217	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	ER degradation enhancing alpha-mannosidase like protein 2	protein-coding
213999	chr7	142880851	142881250	+	0	NA	intron (NM_018646, intron 1 of 14)	intron (NM_018646, intron 1 of 14)	4695	NM_018646	55503		NM_014274	ENSG00000165125	TRPV6	ABP/ZF|CAT1|CATL|ECAC2|HRPTTN|HSA277909|LP6728|ZFAB	transient receptor potential cation channel subfamily V member 6	protein-coding
123888	chr19	55319821	55320230	+	0	NA	intron (NR_104066, intron 5 of 6)	intron (NR_104066, intron 5 of 6)	5316	NM_001085488	284417		NM_001085488	ENSG00000180061	TMEM150B	DRAM3|TMEM224|TTN2	transmembrane protein 150B	protein-coding
143653	chr20	31872171	31872330	+	0	NA	intron (NR_148013, intron 2 of 16)	L2a|LINE|L2	-1506	NM_080611	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
192674	chr6	26231971	26232200	+	0	NA	Intergenic	Intergenic	2902	NM_005320	3007		NM_005320	ENSG00000124575	H1-3	H1.3|H1D|H1F3|H1s-2|HIST1H1D	H1.3 linker histone, cluster member	protein-coding
12398	chr1	101295021	101295520	+	0	NA	Intergenic	Intergenic	-28567	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
46249	chr11	124740501	124741250	+	0	NA	intron (NM_006176, intron 1 of 3)	intron (NM_006176, intron 1 of 3)	933	NM_001126181	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
5490	chr1	25697701	25698300	+	0	NA	intron (NM_001385185, intron 1 of 10)	intron (NM_001385185, intron 1 of 10)	1845	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
111168	chr19	3345121	3345580	+	0	NA	Intergenic	L2a|LINE|L2	-14280	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
136715	chr2	181170201	181170480	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	46503	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
125128	chr2	9838671	9839030	+	0	NA	Intergenic	L2a|LINE|L2	-4592	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
154381	chr22	35156371	35156530	+	0	NA	intron (NR_126356, intron 4 of 5)	(CT)n|Simple_repeat|Simple_repeat	74606	NR_126356	104310353		NR_126356	ENSG00000293220	LINC01399	-	long intergenic non-protein coding RNA 1399	ncRNA
203775	chr7	1231321	1231980	+	0	NA	Intergenic	CpG	-1222	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
45655	chr11	119013201	119013700	+	0	NA	intron (NR_104050, intron 8 of 10).2	AluSc|SINE|Alu	4893	NM_001028	6230		NM_001028	ENSG00000118181	RPS25	S25|eS25	ribosomal protein S25	protein-coding
73411	chr15	42926601	42927130	+	0	NA	Intergenic	Intergenic	-6087	NM_173500	146057		NM_173500	ENSG00000128881	TTBK2	SCA11|TTBK	tau tubulin kinase 2	protein-coding
187385	chr5	141875571	141876590	+	0	NA	intron (NM_032420, intron 1 of 4)	CpG	2330	NM_032420	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
143903	chr20	32583701	32584500	+	0	NA	intron (NM_001256798, intron 1 of 10)	CpG	1233	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
205086	chr7	6653801	6654000	+	0	NA	exon (NM_001278559, exon 9 of 9)	exon (NM_001278559, exon 9 of 9)	16582	NM_001278559	100131017		NM_001278559	ENSG00000205903	ZNF316	MZF-3	zinc finger protein 316	protein-coding
33221	chr10	114082751	114083600	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	39309	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
83546	chr16	28030371	28031450	+	0	NA	intron (NM_001109763, intron 1 of 6)	G-rich|Low_complexity|Low_complexity	32804	NM_001109763	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
87744	chr16	75223671	75224030	+	0	NA	intron (NM_001329190, intron 5 of 5)	intron (NM_001329190, intron 5 of 5)	-2533	NR_109777	100506281		NR_109777	ENSG00000290455	LOC100506281	-	uncharacterized LOC100506281	ncRNA
151634	chr22	16560121	16560700	+	0	NA	Intergenic	(CAAGCCAGC)n|Simple_repeat|Simple_repeat	32400	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
93322	chr17	18185851	18186450	+	0	NA	intron (NM_017758, intron 1 of 3)	intron (NM_017758, intron 1 of 3)	2322	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
113092	chr19	8275301	8275700	+	0	NA	Intergenic	AluSq|SINE|Alu	32858	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
153012	chr22	23215521	23215980	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	35241	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
180114	chr5	1276671	1276830	+	0	NA	intron (NM_001193376, intron 6 of 14)	L1M5|LINE|L1	18318	NM_198253	7015		NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
232390	chr9	135973401	135973800	+	0	NA	Intergenic	Intergenic	-12227	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
1926	chr1	6483671	6484080	+	0	NA	intron (NM_198681, intron 2 of 21)	intron (NM_198681, intron 2 of 21)	1594	NM_001265593	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
66169	chr14	60642051	60642950	+	0	NA	TTS (NM_005982)	TTS (NM_005982)	3284	NR_126480	104548971		NR_126480		SALRNA1	SAL-RNA1|XLOC_023166	senescence associated long non-coding RNA 1	ncRNA
3550	chr1	16150171	16150330	+	0	NA	intron (NM_001329090, intron 1 of 15)	MIR1_Amn|SINE|MIR	5819	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
192773	chr6	26520351	26522380	+	0	NA	promoter-TSS (NR_026790)	promoter-TSS (NR_026790)	-341	NR_026790	493812		NR_026790	ENSG00000228223	HCG11	CTA-14H9.3|bK14H9.3	HLA complex group 11	ncRNA
143754	chr20	32375401	32376000	+	0	NA	intron (NM_015338, intron 3 of 11)	AluSz6|SINE|Alu	16635	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
144234	chr20	34404301	34404500	+	0	NA	intron (NM_001257138, intron 3 of 23)	MIRb|SINE|MIR	41127	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
159722	chr3	15759601	15760000	+	0	NA	intron (NM_001349277, intron 3 of 27)	intron (NM_001349277, intron 3 of 27)	-3253	NM_001195099	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
7230	chr1	32329901	32331100	+	0	NA	intron (NM_004964, intron 7 of 13)	intron (NM_004964, intron 7 of 13)	5733	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
206685	chr7	36487801	36488280	+	0	NA	Intergenic	Intergenic	-97683	NM_001100425	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
48222	chr12	8184301	8184500	+	0	NA	intron (NR_026788, intron 1 of 7)	SVA_D|Retroposon|SVA	4191	NR_026788	440078		NR_026788	ENSG00000226711	FAM66C	-	family with sequence similarity 66 member C	ncRNA
151733	chr22	17772421	17772680	+	0	NA	intron (NM_001244567, intron 1 of 5)	intron (NM_001244567, intron 1 of 5)	1492	NM_197966	637		NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
113149	chr19	8340171	8341230	+	0	NA	intron (NM_198471, intron 1 of 10)	intron (NM_198471, intron 1 of 10)	2562	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
5000	chr1	24390151	24390680	+	0	NA	intron (NM_178122, intron 2 of 7)	intron (NM_178122, intron 2 of 7)	-23072	NM_001322854	57185		NM_020448	ENSG00000001461	NIPAL3	DJ462O23.2|NPAL3|SLC57A5	NIPA like domain containing 3	protein-coding
61975	chr13	79479751	79480130	+	0	NA	intron (NR_046685, intron 1 of 2)	intron (NR_046685, intron 1 of 2)	-1184	NM_001161407	54602		NM_019080	ENSG00000102471	NDFIP2	N4WBP5A	Nedd4 family interacting protein 2	protein-coding
186096	chr5	134117721	134118100	+	0	NA	intron (NR_033449, intron 1 of 7)	intron (NR_033449, intron 1 of 7)	2297	NM_001134851	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
104431	chr17	81078401	81079200	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	-4189	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
75628	chr15	67149701	67150730	+	0	NA	intron (NM_001145103, intron 1 of 8)	intron (NM_001145103, intron 1 of 8)	12194	NM_001145103	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
23326	chr1	228096801	228097000	+	0	NA	promoter-TSS (NR_037415)	promoter-TSS (NR_037415)	-363	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
206418	chr7	32515901	32516300	+	0	NA	intron (NM_015060, intron 1 of 15)	MER4-int|LTR|ERV1	20611	NM_015060	23080		NM_015060	ENSG00000105778	AVL9	KIAA0241	AVL9 cell migration associated	protein-coding
10235	chr1	63327551	63328130	+	0	NA	promoter-TSS (NR_106716)	promoter-TSS (NR_106716)	-856	NR_106716	102464823		NR_106716	ENSG00000275836	MIR6068	hsa-mir-6068	microRNA 6068	ncRNA
216852	chr8	22610451	22610830	+	0	NA	intron (NM_021174, intron 7 of 20)	intron (NM_021174, intron 7 of 20)	5598	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
122076	chr19	48722921	48723180	+	0	NA	intron (NM_017805, intron 10 of 11)	AluJr|SINE|Alu	-3325	NM_001130915	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
133478	chr2	119869051	119869350	+	0	NA	intron (NM_002830, intron 3 of 26)	L1ME2|LINE|L1	109278	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
94654	chr17	30235171	30236300	+	0	NA	promoter-TSS (NM_001045)	promoter-TSS (NM_001045)	-38	NM_001045	6532		NM_001045	ENSG00000108576	SLC6A4	5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT	solute carrier family 6 member 4	protein-coding
181112	chr5	37197501	37198280	+	0	NA	intron (NM_001384732, intron 20 of 52)	L1MB7|LINE|L1	-51156	NR_134263	105374727		NR_134263	ENSG00000286193	CPLANE1-AS1	-	CPLANE1 antisense RNA 1	ncRNA
71964	chr15	24916621	24916950	+	0	NA	intron (NM_001349462, intron 3 of 12)	LTR12F|LTR|ERV1	-38108	NM_005678	8926		NM_005678	ENSG00000273173	SNURF	-	SNRPN upstream open reading frame	protein-coding
149849	chr21	35048221	35049630	+	0	NA	5' UTR (NM_001754, exon 2 of 9)	5' UTR (NM_001754, exon 2 of 9)	377	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
87056	chr16	68328421	68329030	+	0	NA	intron (NR_165371, intron 5 of 17)	intron (NR_165371, intron 5 of 17)	17611	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
68081	chr14	75274521	75275650	+	0	NA	Intergenic	Intergenic	-3743	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
44019	chr11	94964971	94965200	+	0	NA	intron (NM_001363371, intron 6 of 6)	intron (NM_001363371, intron 6 of 6)	8471	NM_016403	51503		NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
34087	chr10	125151451	125152150	+	0	NA	intron (NM_001290214, intron 1 of 10)	CpG	6977	NM_001321013	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
157931	chr22	49784671	49784830	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	39581	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
39149	chr11	54947451	54947550	+	0	NA	Intergenic	L1PA2|LINE|L1	240668	NM_001005272	81318		NM_001005272	ENSG00000221840	OR4A5	OR11-111	olfactory receptor family 4 subfamily A member 5	protein-coding
184935	chr5	112979771	112980000	+	0	NA	intron (NR_038352, intron 1 of 8)	intron (NR_038352, intron 1 of 8)	3087	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
62845	chr13	109795051	109795350	+	0	NA	Intergenic	L1ME4b|LINE|L1	-8617	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
41406	chr11	66022171	66023250	+	0	NA	intron (NM_053054, intron 2 of 11)	MIRb|SINE|MIR	3769	NM_053054	117144		NM_053054	ENSG00000175294	CATSPER1	CATSPER|SPGF7	cation channel sperm associated 1	protein-coding
165180	chr3	72438371	72438730	+	0	NA	intron (NM_012234, intron 1 of 3)	L2a|LINE|L2	8073	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
17664	chr1	157628721	157629100	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-30825	NM_031282	83417		NM_031282	ENSG00000163518	FCRL4	CD307d|FCRH4|IGFP2|IRTA1	Fc receptor like 4	protein-coding
163820	chr3	52443751	52444230	+	0	NA	intron (NM_020163, intron 1 of 15)	intron (NM_020163, intron 1 of 15)	1113	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
97324	chr17	43254501	43255390	+	0	NA	Intergenic	AluSx|SINE|Alu	-2926	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
188182	chr5	150523651	150523980	+	0	NA	intron (NM_001543, intron 2 of 14)	intron (NM_001543, intron 2 of 14)	15684	NM_001543	3340		NM_001543	ENSG00000070614	NDST1	HSST|MRT46|NST1	N-deacetylase and N-sulfotransferase 1	protein-coding
83742	chr16	28639721	28640080	+	0	NA	intron (NM_001310136, intron 1 of 6)	intron (NM_001310136, intron 1 of 6)	1539	NM_001310136	728734		NM_001310136	ENSG00000255524	NPIPB8	-	nuclear pore complex interacting protein family member B8	protein-coding
210026	chr7	94007671	94008030	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-3495	NM_001317739	10282		NM_005868	ENSG00000105829	BET1	HBET1|MDRP	Bet1 golgi vesicular membrane trafficking protein	protein-coding
127168	chr2	38260651	38260950	+	0	NA	Intergenic	Intergenic	115730	NM_001330460	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
147930	chr20	62921151	62921650	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	5105	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
179161	chr4	169761271	169761630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-3506	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
89488	chr16	89121521	89121780	+	0	NA	intron (NR_147928, intron 8 of 11)	intron (NR_147928, intron 8 of 11)	-14898	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
26977	chr10	26740821	26741080	+	0	NA	intron (NM_001321979, intron 10 of 11)	intron (NM_001321979, intron 10 of 11)	43249	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
56689	chr12	120025051	120025250	+	0	NA	intron (NR_147894, intron 3 of 8)	AluYe5|SINE|Alu	35306	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
23113	chr1	226682701	226683600	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-8082	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
230847	chr9	129105521	129106100	+	0	NA	intron (NM_001346549, intron 2 of 13)	intron (NM_001346549, intron 2 of 13)	4983	NM_001346547	1384		NM_000755	ENSG00000095321	CRAT	CAT|CAT1|NBIA8	carnitine O-acetyltransferase	protein-coding
42604	chr11	72100251	72101000	+	0	NA	intron (NM_017907, intron 1 of 4)	intron (NM_017907, intron 1 of 4)	2672	NM_017907	55004		NM_017907	ENSG00000149357	LAMTOR1	C11orf59|PDRO|Ragulator1|p18|p27RF-Rho	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding
100849	chr17	64133301	64134100	+	0	NA	Intergenic	Intergenic	-3556	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
8642	chr1	41740671	41741400	+	0	NA	intron (NM_024503, intron 1 of 8)	MIRb|SINE|MIR	177887	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
5606	chr1	26047301	26047500	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-1282	NM_032513	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
173432	chr4	8218071	8219230	+	0	NA	intron (NM_001318480, intron 8 of 17)	intron (NM_001318480, intron 8 of 17)	19360	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
232529	chr9	136333201	136333600	+	0	NA	intron (NM_015597, intron 1 of 8)	intron (NM_015597, intron 1 of 8)	5861	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
102527	chr17	75817671	75818000	+	0	NA	intron (NM_001080419, intron 9 of 15)	intron (NM_001080419, intron 9 of 15)	26569	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
40919	chr11	65212071	65212950	+	0	NA	TTS (NM_005186)	TTS (NM_005186)	-1330	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
30987	chr10	88082801	88083000	+	0	NA	Intergenic	Intergenic	219275	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
159526	chr3	14428471	14428880	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	26069	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
6357	chr1	27804721	27805030	+	0	NA	intron (NM_177424, intron 4 of 8)	THE1D|LTR|ERVL-MaLR	-25907	NM_014110	5511		NM_002713	ENSG00000117751	PPP1R8	ARD-1|ARD1|NIPP-1|NIPP1|PRO2047	protein phosphatase 1 regulatory subunit 8	protein-coding
195117	chr6	35662921	35663230	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	1714	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
125210	chr2	10305151	10306350	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	2050	NM_134421	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
187559	chr5	142784501	142784880	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	13463	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
104223	chr17	80649551	80650150	+	0	NA	intron (NM_020761, intron 3 of 33)	intron (NM_020761, intron 3 of 33)	105012	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
60109	chr13	37058871	37060180	+	0	NA	promoter-TSS (NM_001278482)	promoter-TSS (NM_001278482)	-38	NM_001278482	55578		NM_017569	ENSG00000102710	SUPT20H	C13|C13orf19|FAM48A|FP757|P38IP|SPT20	SPT20 homolog, SAGA complex component	protein-coding
113238	chr19	8489201	8490330	+	0	NA	TTS (NM_001297418)	TTS (NM_001297418)	12875	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
224672	chr9	21100701	21100900	+	0	NA	Intergenic	L1MB2|LINE|L1	-22858	NM_002176	3456		NM_002176	ENSG00000171855	IFNB1	IFB|IFF|IFN-beta|IFNB	interferon beta 1	protein-coding
4388	chr1	20787101	20788400	+	0	NA	promoter-TSS (NM_001376797)	promoter-TSS (NM_001376797)	-443	NM_001372052	50809		NM_016287	ENSG00000127483	HP1BP3	HP1-BP74|HP1BP74	heterochromatin protein 1 binding protein 3	protein-coding
114758	chr19	13589221	13589550	+	0	NA	Intergenic	Intergenic	-82906	NM_023035	773		NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|DEE42|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6	calcium voltage-gated channel subunit alpha1 A	protein-coding
203466	chr7	472351	472680	+	0	NA	Intergenic	Intergenic	-40714	NR_165236	112267991		NR_165236		LOC112267991	-	uncharacterized LOC112267991	ncRNA
150632	chr21	43394101	43394500	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-31951	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
234349	chrX	15334371	15334900	+	0	NA	intron (NR_033835, intron 1 of 5)	intron (NR_033835, intron 1 of 5)	888	NM_002641	5277		NM_002641	ENSG00000165195	PIGA	GPI3|MCAHS2|NEDEPH|PIG-A|PNH1	phosphatidylinositol glycan anchor biosynthesis class A	protein-coding
83308	chr16	24541571	24542000	+	0	NA	intron (NM_032626, intron 1 of 2)	intron (NM_032626, intron 1 of 2)	2198	NM_032626	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
104347	chr17	80980871	80982150	+	0	NA	Intergenic	(GCTGCC)n|Simple_repeat|Simple_repeat	-10297	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
218770	chr8	58972401	58972600	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	146647	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
225234	chr9	34208651	34208950	+	0	NA	intron (NM_001171203, intron 2 of 7)	AluSx1|SINE|Alu	29757	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
86795	chr16	67817851	67817950	+	0	NA	intron (NM_001288994, intron 2 of 10)	AluSx|SINE|Alu	11011	NM_001351158	55815		NM_018430	ENSG00000102904	TSNAXIP1	TXI1	translin associated factor X interacting protein 1	protein-coding
156092	chr22	40060301	40060700	+	0	NA	intron (NM_001024843, intron 1 of 23)	L1MEc|LINE|L1	15683	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
102845	chr17	76476201	76476400	+	0	NA	intron (NR_164787, intron 9 of 18)	intron (NR_164787, intron 9 of 18)	8697	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
69525	chr14	96364851	96364950	+	0	NA	5' UTR (NM_001271904, exon 1 of 4)	5' UTR (NM_001271904, exon 1 of 4)	164	NM_001271904	51527		NM_016472	ENSG00000100744	GSKIP	C14orf129|HSPC210	GSK3B interacting protein	protein-coding
116012	chr19	17124201	17124400	+	0	NA	intron (NM_004145, intron 2 of 39)	FLAM_A|SINE|Alu	32065	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
168487	chr3	143236771	143236930	+	0	NA	Intergenic	Intergenic	-105396	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
97968	chr17	45245601	45246030	+	0	NA	intron (NM_005892, intron 23 of 26)	intron (NM_005892, intron 23 of 26)	-2110	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
21020	chr1	202955171	202955330	+	0	NA	intron (NM_001290629, intron 1 of 8)	AluJr|SINE|Alu	2734	NM_001290553	51094		NM_015999	ENSG00000159346	ADIPOR1	ACDCR1|CGI-45|CGI45|PAQR1|TESBP1A	adiponectin receptor 1	protein-coding
102370	chr17	75524871	75526730	+	0	NA	promoter-TSS (NM_001015002)	promoter-TSS (NM_001015002)	98	NM_001015002	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
230525	chr9	128341301	128342200	+	0	NA	intron (NM_005094, intron 1 of 12)	AluSg|SINE|Alu	1223	NM_005094	10999		NM_005094	ENSG00000167114	SLC27A4	ACSVL4|FATP4|IPS	solute carrier family 27 member 4	protein-coding
227946	chr9	94638951	94639850	+	0	NA	5' UTR (NM_000507, exon 1 of 7)	5' UTR (NM_000507, exon 1 of 7)	118	NM_000507	2203		NM_000507	ENSG00000165140	FBP1	FBP	fructose-bisphosphatase 1	protein-coding
14958	chr1	147926651	147926750	+	0	NA	Intergenic	Intergenic	-1674	NM_001350182	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
52726	chr12	56605171	56605330	+	0	NA	exon (NM_013449, exon 14 of 29)	exon (NM_013449, exon 14 of 29)	25076	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
156149	chr22	40180251	40180780	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	2590	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
37711	chr11	30333501	30333930	+	0	NA	intron (NM_152316, intron 3 of 3)	Tigger1|DNA|TcMar-Tigger	10611	NM_152316	120534		NM_152316	ENSG00000152219	ARL14EP	ARF7EP|C11orf46|dJ299F11.1	ADP ribosylation factor like GTPase 14 effector protein	protein-coding
234043	chrX	3918301	3918850	+	0	NA	intron (NR_146578, intron 1 of 5).2	THE1A|LTR|ERVL-MaLR	2167	NR_146579	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
86760	chr16	67659101	67660600	+	0	NA	intron (NM_001082486, intron 2 of 11)	CpG-9845	410	NM_001082486	65057		NM_022914	ENSG00000102977	ACD	PIP1|PTOP|TINT1|TPP1	ACD shelterin complex subunit and telomerase recruitment factor	protein-coding
235445	chrX	46327001	46327400	+	0	NA	intron (NR_110388, intron 1 of 1)	LTR37A|LTR|ERV1	474	NR_110388	101927574		NR_110388		LINC01186	ZNF674-1	long intergenic non-protein coding RNA 1186	ncRNA
161417	chr3	41245501	41245700	+	0	NA	TTS (NM_001322501)	TTS (NM_001322501)	46095	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
71328	chr14	105413401	105413900	+	0	NA	3' UTR (NM_001195082, exon 4 of 4)	3' UTR (NM_001195082, exon 4 of 4)	6089	NR_125384	100507437		NR_125384	ENSG00000251602	MTA1-DT	-	MTA1 divergent transcript	ncRNA
176860	chr4	102611071	102612050	+	0	NA	intron (NM_001382625, intron 21 of 24)	UCON132b|DNA|hAT-Tip100	-109074	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
183016	chr5	72954251	72954630	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-1601	NM_138782	115548		NM_138782	ENSG00000157107	FCHO2	-	FCH and mu domain containing endocytic adaptor 2	protein-coding
129503	chr2	69630921	69631580	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	12488	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
203498	chr7	603441	606000	+	0	NA	intron (NR_110055, intron 1 of 1)	CpG	1322	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
157759	chr22	46684771	46685150	+	0	NA	3' UTR (NM_022766, exon 13 of 13)	3' UTR (NM_022766, exon 13 of 13)	53292	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
78032	chr15	90003471	90004000	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	2411	NM_198526	374655		NM_198526	ENSG00000140548	ZNF710	-	zinc finger protein 710	protein-coding
94333	chr17	28842151	28843450	+	0	NA	promoter-TSS (NM_001288631)	promoter-TSS (NM_001288631)	-10	NM_001288633	55731		NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding
126700	chr2	30157901	30158100	+	0	NA	intron (NM_001127401, intron 4 of 4)	MER58A|DNA|hAT-Charlie	10993	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
189726	chr5	176539551	176540200	+	0	NA	Intergenic	Intergenic	-2473	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
161591	chr3	43035901	43036100	+	0	NA	intron (NM_001129908, intron 2 of 4)	intron (NM_001129908, intron 2 of 4)	56689	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
225380	chr9	34994171	34994530	+	0	NA	intron (NM_001349725, intron 3 of 4)	intron (NM_001349725, intron 3 of 4)	4060	NM_001135005	25822		NM_012266	ENSG00000137094	DNAJB5	Hsc40	DnaJ heat shock protein family (Hsp40) member B5	protein-coding
51313	chr12	51317771	51318280	+	0	NA	intron (NM_001290007, intron 1 of 12)	intron (NM_001290007, intron 1 of 12)	6149	NM_001290009	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
198410	chr6	105989671	105989830	+	0	NA	Intergenic	Intergenic	-96586	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
10058	chr1	58717901	58718900	+	0	NA	Intergenic	Intergenic	-18338	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
11756	chr1	92315321	92316380	+	0	NA	intron (NM_024813, intron 6 of 12)	intron (NM_024813, intron 6 of 12)	16791	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
4596	chr1	22081351	22081650	+	0	NA	intron (NM_044472, intron 2 of 5)	intron (NM_044472, intron 2 of 5)	28791	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
216919	chr8	22714671	22714830	+	0	NA	intron (NM_001363233, intron 6 of 6)	intron (NM_001363233, intron 6 of 6)	-21270	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
66877	chr14	65089701	65090350	+	0	NA	intron (NR_045122, intron 1 of 2)	intron (NR_045122, intron 1 of 2)	107	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
134324	chr2	136067421	136067680	+	0	NA	Intergenic	Intergenic	48685	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
213977	chr7	142802451	142802780	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	31645	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
26624	chr10	22370371	22370730	+	0	NA	intron (NM_172242, intron 4 of 9)	intron (NM_172242, intron 4 of 9)	25054	NM_012443	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
125037	chr2	9602351	9602650	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	28497	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
133795	chr2	127788151	127789380	+	0	NA	intron (NM_001006623, intron 1 of 7)	SVA_F|Retroposon|SVA	22406	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
191480	chr6	11202001	11202200	+	0	NA	intron (NM_182966, intron 2 of 2)	intron (NM_182966, intron 2 of 2)	30568	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
200824	chr6	137970301	137970700	+	0	NA	Intergenic	Intergenic	-24700	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
96931	chr17	42161471	42161830	+	0	NA	intron (NM_012285, intron 15 of 16)	intron (NM_012285, intron 15 of 16)	-6661	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
41355	chr11	65965001	65966250	+	0	NA	intron (NM_005146, intron 5 of 19)	intron (NM_005146, intron 5 of 19)	3891	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
175286	chr4	67549221	67549630	+	0	NA	Intergenic	Intergenic	-3922	NM_001362481	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
132544	chr2	106187851	106188350	+	0	NA	intron (NR_165308, intron 1 of 14)	intron (NR_165308, intron 1 of 14)	6201	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
36519	chr11	6472521	6472780	+	0	NA	intron (NM_001248006, intron 1 of 11)	L2b|LINE|L2	1291	NM_033278	10612		NM_006458	ENSG00000110171	TRIM3	BERP|HAC1|RNF22|RNF97	tripartite motif containing 3	protein-coding
46587	chr11	128515751	128517250	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	5810	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
227690	chr9	93010551	93011550	+	0	NA	intron (NR_121565, intron 2 of 2)	intron (NR_121565, intron 2 of 2)	3894	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
22945	chr1	225989151	225989450	+	0	NA	intron (NM_152608, intron 5 of 6)	AluSg4|SINE|Alu	10043	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
76886	chr15	77985251	77985550	+	0	NA	Intergenic	Intergenic	8825	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
105748	chr18	2749401	2749600	+	0	NA	intron (NM_015295, intron 30 of 47)	intron (NM_015295, intron 30 of 47)	93774	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
43803	chr11	86486401	86487010	+	0	NA	intron (NR_147828, intron 7 of 14)	intron (NR_147828, intron 7 of 14)	111818	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
127196	chr2	38542501	38543700	+	0	NA	Intergenic	MER4C|LTR|ERV1	-27360	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
115357	chr19	15224671	15225080	+	0	NA	Intergenic	Intergenic	7573	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
29999	chr10	73762271	73762430	+	0	NA	intron (NM_198597, intron 6 of 22)	intron (NM_198597, intron 6 of 22)	-9926	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
234376	chrX	15789971	15791480	+	0	NA	intron (NM_005089, intron 1 of 10)	intron (NM_005089, intron 1 of 10)	241	NM_005089	8233		NM_005089	ENSG00000169249	ZRSR2	U2AF1-RS2|U2AF1L2|U2AF1RS2|URP|ZC3H22	zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2	protein-coding
148904	chr21	8758751	8759150	+	0	NA	Intergenic	Intergenic	-228049	NR_037421	100500862		NR_037421	ENSG00000275708	MIR3648-1	MIR3648|hsa-mir-3648-1	microRNA 3648-1	ncRNA
35544	chr11	1598851	1599350	+	0	NA	promoter-TSS (NM_001004325)	promoter-TSS (NM_001004325)	-806	NM_001004325	440021		NM_001004325	ENSG00000205867	KRTAP5-2	KRTAP5-8|KRTAP5.2	keratin associated protein 5-2	protein-coding
14241	chr1	143236451	143236600	+	0	NA	Intergenic	Intergenic	186067	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
154702	chr22	36404971	36406700	+	0	NA	Intergenic	Intergenic	-17868	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
11276	chr1	89123701	89123900	+	0	NA	intron (NM_004120, intron 1 of 10)	L1MC4a|LINE|L1	2314	NM_004120	2634		NM_004120	ENSG00000162645	GBP2	-	guanylate binding protein 2	protein-coding
50552	chr12	48002501	48002930	+	0	NA	intron (NM_001844, intron 1 of 53)	intron (NM_001844, intron 1 of 53)	1761	NM_001844	1280		NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
930	chr1	1718571	1718730	+	0	NA	intron (NM_033529, intron 4 of 19)	AluYm1|SINE|Alu	5707	NR_132739	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
169135	chr3	155919951	155920050	+	0	NA	intron (NM_003875, intron 10 of 15)	intron (NM_003875, intron 10 of 15)	49350	NM_003875	8833		NM_003875	ENSG00000163655	GMPS	GATD7	guanine monophosphate synthase	protein-coding
131775	chr2	98481801	98482000	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	35890	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
72344	chr15	31332371	31333650	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	6175	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
53165	chr12	57944571	57944730	+	0	NA	intron (NM_001320408, intron 1 of 5).2	L3|LINE|CR1	3083	NM_033276	91419		NM_033276	ENSG00000166896	ATP23	KUB3|XRCC6BP1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding
186229	chr5	134396971	134397130	+	0	NA	Intergenic	AluSq|SINE|Alu	14831	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
60936	chr13	46313451	46314030	+	0	NA	Intergenic	Intergenic	-15896	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
59211	chr13	23342451	23342550	+	0	NA	intron (NM_014363, intron 9 of 9)	Tigger4a|DNA|TcMar-Tigger	33008	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
5228	chr1	24994771	24995580	+	0	NA	Intergenic	Intergenic	-28328	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
35052	chr11	594321	594580	+	0	NA	intron (NM_001286582, intron 6 of 17)	AluSz|SINE|Alu	17980	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
11083	chr1	85258671	85260280	+	0	NA	exon (NM_198077, exon 1 of 3)	exon (NM_198077, exon 1 of 3)	187	NR_024113	148423		NM_198077	ENSG00000162642	C1orf52	gm117	chromosome 1 open reading frame 52	protein-coding
148654	chr21	6110521	6112250	+	0	NA	intron (NM_173354, intron 1 of 13).2	CpG	254	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
136154	chr2	174335751	174336050	+	0	NA	intron (NM_001145250, intron 1 of 1)	CpG	946	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
110938	chr19	2822571	2822930	+	0	NA	intron (NM_001102651, intron 1 of 4)	AluJo|SINE|Alu	2882	NM_001102651	115196		NM_152303	ENSG00000172006	ZNF554	-	zinc finger protein 554	protein-coding
50044	chr12	44317601	44317800	+	0	NA	intron (NM_001286211, intron 6 of 6)	L1PA16|LINE|L1	481619	NM_032256	84216		NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
211997	chr7	114083321	114083580	+	0	NA	Intergenic	Intergenic	-2877	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
196805	chr6	46012721	46012980	+	0	NA	intron (NM_001370649, intron 1 of 5)	intron (NM_001370649, intron 1 of 5)	3010	NM_016929	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
194944	chr6	35258671	35261700	+	0	NA	intron (NM_003427, intron 1 of 13)	intron (NM_003427, intron 1 of 13)	450	NM_001292032	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
115851	chr19	16536001	16536630	+	0	NA	intron (NM_006387, intron 2 of 16)	intron (NM_006387, intron 2 of 16)	6122	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
125804	chr2	24048571	24048930	+	0	NA	promoter-TSS (NM_001322963)	promoter-TSS (NM_001322963)	-991	NM_054033	2281		NM_004116	ENSG00000119782	FKBP1B	FKBP12.6|FKBP1L|OTK4|PKBP1L|PPIase	FKBP prolyl isomerase 1B	protein-coding
2897	chr1	11666071	11666330	+	0	NA	intron (NM_018438, intron 1 of 5)	AluJr|SINE|Alu	2000	NM_018438	26270		NM_018438	ENSG00000116663	FBXO6	FBG2|FBS2|FBX6|Fbx6b	F-box protein 6	protein-coding
137744	chr2	197851651	197851750	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	47107	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
163571	chr3	51940251	51940550	+	0	NA	intron (NM_004704, intron 2 of 14)	intron (NM_004704, intron 2 of 14)	1504	NM_004704	9136		NM_004704	ENSG00000114767	RRP9	RNU3IP2|U3-55K	ribosomal RNA processing 9, U3 small nucleolar RNA binding protein	protein-coding
175764	chr4	77776951	77777700	+	0	NA	intron (NM_001365006, intron 1 of 11)	Tigger3c|DNA|TcMar-Tigger	41739	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
124090	chr19	55638821	55639460	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-1862	NM_207115	51157		NM_016202	ENSG00000213015	ZNF580	-	zinc finger protein 580	protein-coding
100876	chr17	64343951	64344650	+	0	NA	intron (NM_000442, intron 13 of 15)	intron (NM_000442, intron 13 of 15)	46560	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
182931	chr5	70777301	70777700	+	0	NA	promoter-TSS (NR_160659).3	promoter-TSS (NR_160659).3	-864	NR_160659	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
53190	chr12	61941851	61941950	+	0	NA	intron (NM_178539, intron 1 of 4)	L1PA2|LINE|L1	250939	NM_178539	338811		NM_178539	ENSG00000198673	TAFA2	FAM19A2|TAFA-2	TAFA chemokine like family member 2	protein-coding
6585	chr1	28759371	28759980	+	0	NA	intron (NM_016258, intron 4 of 4)	AluSz6|SINE|Alu	22735	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
180755	chr5	32138821	32139230	+	0	NA	intron (NM_022130, intron 2 of 3)	intron (NM_022130, intron 2 of 3)	35294	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
201478	chr6	148780921	148781700	+	0	NA	intron (NM_005715, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	34280	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
208675	chr7	73221071	73221230	+	0	NA	intron (NR_003186, intron 1 of 7)	intron (NR_003186, intron 1 of 7)	511	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
88427	chr16	84737971	84738880	+	0	NA	intron (NR_073577, intron 2 of 11)	intron (NR_073577, intron 2 of 11)	38425	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
58067	chr12	124542151	124542650	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	25212	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
143115	chr20	23415701	23416480	+	0	NA	intron (NR_104266, intron 1 of 10)	intron (NR_104266, intron 1 of 10)	5398	NR_104266	63908		NM_022080	ENSG00000125814	NAPB	DEE107|SNAP-BETA|SNAPB	NSF attachment protein beta	protein-coding
10126	chr1	59317851	59317950	+	0	NA	intron (NR_103473, intron 2 of 16)	intron (NR_103473, intron 2 of 16)	7868	NM_001350792	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
209443	chr7	76399851	76400800	+	0	NA	exon (NM_080744, exon 4 of 11)	exon (NM_080744, exon 4 of 11)	2803	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
166499	chr3	114314301	114314850	+	0	NA	TTS (NM_001348805)	TTS (NM_001348805)	1994	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
64036	chr14	22525401	22526930	+	0	NA	Intergenic	Intergenic	30897	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
111147	chr19	3288621	3288930	+	0	NA	intron (NR_033342, intron 10 of 12)	AluJr|SINE|Alu	63497	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
196661	chr6	44342301	44342800	+	0	NA	promoter-TSS (NM_145026)	promoter-TSS (NM_145026)	-100	NM_001372081	221409		NM_145026	ENSG00000249481	SPATS1	DDIP|SPATA8|SRSP1	spermatogenesis associated serine rich 1	protein-coding
54944	chr12	96233901	96234430	+	0	NA	intron (NM_005230, intron 2 of 4)	intron (NM_005230, intron 2 of 4)	-21333	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
175663	chr4	76948421	76949200	+	0	NA	promoter-TSS (NM_001306147)	promoter-TSS (NM_001306147)	-942	NM_018243	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
137643	chr2	197392821	197393650	+	0	NA	intron (NM_012433, intron 23 of 24)	intron (NM_012433, intron 23 of 24)	41793	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
152559	chr22	21020751	21021250	+	0	NA	intron (NM_001349875, intron 3 of 10)	intron (NM_001349875, intron 3 of 10)	5840	NM_001349874	9127		NM_005446	ENSG00000099957	P2RX6	P2RXL1|P2X6|P2XM	purinergic receptor P2X 6	protein-coding
97094	chr17	42422121	42423750	+	0	NA	exon (NM_012232, exon 1 of 2)	exon (NM_012232, exon 1 of 2)	321	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
84696	chr16	30786521	30787650	+	0	NA	5' UTR (NM_001345970, exon 1 of 3)	5' UTR (NM_001345970, exon 1 of 3)	120	NM_001080417	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
121925	chr19	48443121	48444550	+	0	NA	exon (NM_000836, exon 14 of 14)	exon (NM_000836, exon 14 of 14)	-2148	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
45526	chr11	118742751	118743050	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	48048	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
75827	chr15	69451021	69451280	+	0	NA	Intergenic	Intergenic	-1668	NM_001003	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
19914	chr1	184223401	184223600	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-163529	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
8770	chr1	42765101	42765300	+	0	NA	intron (NM_001146289, intron 1 of 14)	L2c|LINE|L2	1828	NM_022356	64175		NM_022356	ENSG00000117385	P3H1	GROS1|LEPRE1|OI8	prolyl 3-hydroxylase 1	protein-coding
148753	chr21	7787551	7788080	+	0	NA	TTS (NM_001367348)	TTS (NM_001367348)	6124	NM_001367348	388820		NM_001367348	ENSG00000243627	SMIM34	SMIM34A	small integral membrane protein 34	protein-coding
115965	chr19	16894571	16895200	+	0	NA	intron (NR_147452, intron 2 of 2)	AluJo|SINE|Alu	2062	NR_147452	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
149876	chr21	35530171	35530330	+	0	NA	intron (NR_073512, intron 1 of 2)	intron (NR_073512, intron 1 of 2)	50514	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
48503	chr12	9864871	9865730	+	0	NA	intron (NM_005127, intron 1 of 4)	L1M3f|LINE|L1	4559	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
182759	chr5	68291121	68291400	+	0	NA	intron (NM_181504, intron 1 of 9)	intron (NM_181504, intron 1 of 9)	596	NM_181504	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
76201	chr15	73677071	73677530	+	0	NA	Intergenic	Intergenic	-6981	NM_025240	80381		NM_025240	ENSG00000103855	CD276	4Ig-B7-H3|B7-H3|B7H3|B7RP-2	CD276 molecule	protein-coding
237729	chrX	126460451	126460550	+	0	NA	Intergenic	L1PA4|LINE|L1	92314	NM_178470	139170		NM_178470	ENSG00000198889	DCAF12L1	KIAA1892L|WDR40B	DDB1 and CUL4 associated factor 12 like 1	protein-coding
60307	chr13	40647671	40648230	+	0	NA	intron (NM_002015, intron 1 of 2)	MER34-int|LTR|ERV1	18691	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
230341	chr9	128010971	128011330	+	0	NA	Intergenic	Intergenic	-30161	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
80885	chr16	3656921	3657180	+	0	NA	TTS (NM_001272049)	TTS (NM_001272049)	2346	NM_001351825	1773		NM_005223	ENSG00000213918	DNASE1	DNL1|DRNI	deoxyribonuclease 1	protein-coding
210277	chr7	99416301	99417200	+	0	NA	TTS (NM_001198879)	TTS (NM_001198879)	7578	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
57000	chr12	120575271	120575430	+	0	NA	intron (NM_001330474, intron 14 of 16)	intron (NM_001330474, intron 14 of 16)	6048	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
107727	chr18	49949971	49950330	+	0	NA	intron (NM_001080467, intron 14 of 39)	intron (NM_001080467, intron 14 of 39)	136127	NR_117096	103091864		NR_117096	ENSG00000267322	SNHG22	SCARNA17|SCARNA17HG	small nucleolar RNA host gene 22	ncRNA
705	chr1	1421071	1421830	+	0	NA	promoter-TSS (NM_001145210)	promoter-TSS (NM_001145210)	-6	NM_001145210	441869		NM_001145210	ENSG00000235098	ANKRD65	-	ankyrin repeat domain 65	protein-coding
87128	chr16	69088921	69089480	+	0	NA	Intergenic	Intergenic	-16453	NM_001199280	3038		NM_005329	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
133822	chr2	127857251	127858630	+	0	NA	intron (NM_004805, intron 1 of 3)	CpG	215	NM_004805	5433		NM_004805	ENSG00000144231	POLR2D	HSRBP4|HSRPB4|RBP4|RPB16|RPB4	RNA polymerase II subunit D	protein-coding
135182	chr2	158010351	158010750	+	0	NA	intron (NM_001135098, intron 1 of 8)	intron (NM_001135098, intron 1 of 8)	15371	NM_001135098	151531		NM_173355	ENSG00000007001	UPP2	UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
127072	chr2	37460321	37460780	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	115920	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
1100	chr1	2041371	2041530	+	0	NA	Intergenic	Intergenic	8620	NR_135509	105378591		NR_135509	ENSG00000226969	PRKCZ-DT	-	PRKCZ divergent transcript	ncRNA
52203	chr12	54368321	54369380	+	0	NA	TTS (NM_001130967)	TTS (NM_001130967)	-4364	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
43071	chr11	74592431	74593600	+	0	NA	non-coding (NR_046410, exon 1 of 12)	non-coding (NR_046410, exon 1 of 12)	433	NR_046410	10714		NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
150555	chr21	43090251	43090350	+	0	NA	Intergenic	Intergenic	-13357	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
104841	chr17	81835471	81835830	+	0	NA	promoter-TSS (NM_001007533)	promoter-TSS (NM_001007533)	-600	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
192218	chr6	18214951	18215250	+	0	NA	exon (NM_001364614, exon 20 of 22)	exon (NM_001364614, exon 20 of 22)	49430	NM_003472	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
90832	chr17	2303071	2304730	+	0	NA	promoter-TSS (NM_001304803)	promoter-TSS (NM_001304803)	-43	NM_001304803	63826		NM_021947	ENSG00000167720	SRR	ILV1|ISO1	serine racemase	protein-coding
87821	chr16	75618651	75619050	+	0	NA	intron (NM_001324450, intron 4 of 8)	MER20|DNA|hAT-Charlie	4431	NM_001324452	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
51235	chr12	50868851	50869150	+	0	NA	intron (NM_182559, intron 3 of 4)	L1PB1|LINE|L1	26074	NM_182559	283471		NM_182559	ENSG00000186452	TMPRSS12	CT151	transmembrane serine protease 12	protein-coding
93104	chr17	17675801	17676930	+	0	NA	non-coding (NR_131243, exon 2 of 4)	non-coding (NR_131243, exon 2 of 4)	1323	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
21390	chr1	205257071	205257230	+	0	NA	promoter-TSS (NM_001331034)	promoter-TSS (NM_001331034)	-47	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
213808	chr7	141014321	141015500	+	0	NA	promoter-TSS (NM_016071)	promoter-TSS (NM_016071)	42	NM_053035	51650		NM_016071	ENSG00000090263	MRPS33	CGI-139|MRP-S33|PTD003|S33mt|mS33	mitochondrial ribosomal protein S33	protein-coding
94215	chr17	28613121	28614000	+	0	NA	TTS (NM_001363827)	TTS (NM_001363827)	625	NM_001174103	124923		NM_144610	ENSG00000167524	RSKR	SGK494	ribosomal protein S6 kinase related	protein-coding
229335	chr9	120903821	120904560	+	0	NA	3' UTR (NM_001190947, exon 6 of 6)	3' UTR (NM_001190947, exon 6 of 6)	-9294	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
38072	chr11	35189901	35190430	+	0	NA	intron (NM_001202556, intron 5 of 7)	intron (NM_001202556, intron 5 of 7)	27215	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
6887	chr1	31422621	31423400	+	0	NA	intron (NM_001199039, intron 2 of 10)	intron (NM_001199039, intron 2 of 10)	9197	NM_018565	347735		NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
32408	chr10	102442471	102442630	+	0	NA	Intergenic	AluJo|SINE|Alu	6038	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B|mir-146b	microRNA 146b	ncRNA
219055	chr8	65795121	65795750	+	0	NA	intron (NM_001242318, intron 1 of 12)	L1ME2|LINE|L1	-6378	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
156176	chr22	40224471	40225030	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	46825	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
186047	chr5	134052321	134052780	+	0	NA	Intergenic	AluJb|SINE|Alu	-47575	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
32160	chr10	101442071	101442430	+	0	NA	intron (NM_001256856, intron 2 of 13)	intron (NM_001256856, intron 2 of 13)	88085	NM_003939	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
194022	chr6	31823771	31823930	+	0	NA	Intergenic	AluSx|SINE|Alu	-3888	NM_005346	3304		NM_005346	ENSG00000204388	HSPA1B	HSP70-1|HSP70-1B|HSP70-2|HSP70.1|HSP70.2|HSP72|HSPA1|HSX70	heat shock protein family A (Hsp70) member 1B	protein-coding
2595	chr1	9881171	9881330	+	0	NA	intron (NM_001012329, intron 1 of 4)	AluJr|SINE|Alu	29019	NM_020248	56998		NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
21365	chr1	205078171	205078330	+	0	NA	TTS (NM_005076)	TTS (NM_005076)	6210	NM_203376	388730		NM_203376	ENSG00000174529	TMEM81	HC3107|KVLA2788|UNQ2788	transmembrane protein 81	protein-coding
99618	chr17	50556421	50557550	+	0	NA	non-coding (NR_038439, exon 2 of 2)	non-coding (NR_038439, exon 2 of 2)	-3730	NM_198377	8913		NM_018896	ENSG00000006283	CACNA1G	Ca(V)T.1|Cav3.1|NBR13|SCA42|SCA42ND	calcium voltage-gated channel subunit alpha1 G	protein-coding
69899	chr14	99441751	99442050	+	0	NA	intron (NM_032233, intron 6 of 12)	intron (NM_032233, intron 6 of 12)	38959	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
70796	chr14	103534171	103534800	+	0	NA	intron (NM_152307, intron 3 of 3)	intron (NM_152307, intron 3 of 3)	5289	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
71098	chr14	104879401	104879600	+	0	NA	intron (NM_001112726, intron 5 of 18)	intron (NM_001112726, intron 5 of 18)	14186	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
184502	chr5	100888871	100889680	+	0	NA	intron (NM_175052, intron 2 of 2)	intron (NM_175052, intron 2 of 2)	14007	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
238171	chrX	136866271	136867400	+	0	NA	Intergenic	AluJr|SINE|Alu	12436	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
87783	chr16	75430871	75431950	+	0	NA	intron (NM_006324, intron 1 of 6)	AluSx1|SINE|Alu	2093	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
110074	chr19	1502971	1504180	+	0	NA	Intergenic	CpG	9444	NM_001367197	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
227979	chr9	95318671	95319030	+	0	NA	Intergenic	AluSx|SINE|Alu	-1141	NM_000136	2176		NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	FA complementation group C	protein-coding
218123	chr8	41544621	41545400	+	0	NA	TTS (NM_032336)	TTS (NM_032336)	15749	NM_032336	84296		NM_032336	ENSG00000147536	GINS4	SLD5	GINS complex subunit 4	protein-coding
4858	chr1	23739271	23739500	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3981	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
39347	chr11	59537201	59538380	+	0	NA	Intergenic	Intergenic	22877	NM_001004711	390199		NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
32195	chr10	101766401	101766600	+	0	NA	Intergenic	L2a|LINE|L2	9614	NM_033164	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
20836	chr1	201538621	201539430	+	0	NA	Intergenic	CpG	19121	NR_026667	376693		NR_026667		RPS10P7	RPS10_2_147|lnc-MCEI	ribosomal protein S10 pseudogene 7	pseudo
115057	chr19	14164451	14164950	+	0	NA	intron (NM_014921, intron 4 of 22)	intron (NM_014921, intron 4 of 22)	27548	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
96372	chr17	40102501	40102700	+	0	NA	Intergenic	AluSp|SINE|Alu	-2011	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
58154	chr12	124927101	124928730	+	0	NA	Intergenic	tRNA-Phe-TTY|tRNA|tRNA	12368	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
209476	chr7	76566751	76566950	+	0	NA	intron (NR_029411, intron 2 of 2)	L1PA4|LINE|L1	17509	NR_029411	100133091		NR_029411	ENSG00000290873	LINC03009	-	long intergenic non-protein coding RNA 3009	ncRNA
43833	chr11	86938801	86939330	+	0	NA	non-coding (NR_120591, exon 3 of 5)	non-coding (NR_120591, exon 3 of 5)	16330	NM_012193	8322		NM_012193	ENSG00000174804	FZD4	CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4	frizzled class receptor 4	protein-coding
42353	chr11	68540151	68540250	+	0	NA	intron (NR_147971, intron 4 of 24)	MER11C|LTR|ERVK	79448	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
36271	chr11	3793121	3793650	+	0	NA	intron (NR_157590, intron 1 of 31)	AluSx4|SINE|Alu	4161	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
70015	chr14	100083651	100084200	+	0	NA	intron (NM_016337, intron 1 of 13)	MIRb|SINE|MIR	18503	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
96901	chr17	42125821	42126650	+	0	NA	intron (NM_004583, intron 5 of 5)	intron (NM_004583, intron 5 of 5)	3431	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
80627	chr16	2981921	2982180	+	0	NA	Intergenic	Intergenic	-1604	NM_001258451	9088		NM_004203	ENSG00000127564	PKMYT1	MYT1|PPP1R126	protein kinase, membrane associated tyrosine/threonine 1	protein-coding
46699	chr11	128783421	128784100	+	0	NA	intron (NM_001167681, intron 6 of 9)	intron (NM_001167681, intron 6 of 9)	58709	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
63446	chr13	114115481	114116130	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	16818	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
21943	chr1	207872801	207873830	+	0	NA	Intergenic	Intergenic	37810	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
125337	chr2	10814401	10814600	+	0	NA	intron (NM_001282706, intron 2 of 13)	intron (NM_001282706, intron 2 of 13)	-1661	NM_001282707	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
166215	chr3	112072121	112073180	+	0	NA	intron (NM_001366279, intron 11 of 15)	L1PA6|LINE|L1	-13685	NM_001171747	79669		NM_024616	ENSG00000114529	C3orf52	HYPT15|TTMP	chromosome 3 open reading frame 52	protein-coding
149843	chr21	35042021	35042400	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-2784	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
134024	chr2	131044501	131044700	+	0	NA	intron (NM_001375902, intron 9 of 10)	intron (NM_001375902, intron 9 of 10)	48562	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
52315	chr12	54950121	54950480	+	0	NA	non-coding (NR_147062, exon 13 of 13)	non-coding (NR_147062, exon 13 of 13)	23432	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
205628	chr7	22528751	22528850	+	0	NA	Intergenic	L1PA3|LINE|L1	-28518	NM_207342	256227		NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
190498	chr5	180363951	180364250	+	0	NA	Intergenic	Intergenic	-10764	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
14197	chr1	124377251	124377350	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2858188	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
174407	chr4	39356871	39357630	+	0	NA	intron (NM_001204747, intron 1 of 24)	intron (NM_001204747, intron 1 of 24)	9112	NM_002913	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
141878	chr20	754851	756100	+	0	NA	Intergenic	AluSp|SINE|Alu	13025	NM_033409	113278		NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
137676	chr2	197463251	197463350	+	0	NA	intron (NM_001320818, intron 2 of 3)	AluSg|SINE|Alu	9536	NM_001320819	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
30386	chr10	78045221	78045500	+	0	NA	intron (NM_001142285, intron 4 of 4)	MIR3|SINE|MIR	11497	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
225080	chr9	33296521	33296780	+	0	NA	intron (NM_147134, intron 2 of 15)	AluJo|SINE|Alu	6134	NM_147134	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
28740	chr10	61965651	61966330	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	64291	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
231558	chr9	131487321	131488150	+	0	NA	intron (NM_013318, intron 27 of 31)	MER5A|DNA|hAT-Charlie	2070	NR_002914	26786		NR_002914	ENSG00000235284	SNORD62A	RNU62|U62|U62A	small nucleolar RNA, C/D box 62A	snoRNA
237170	chrX	107675801	107676200	+	0	NA	Intergenic	L1MB7|LINE|L1	40508	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
234227	chrX	13004101	13005050	+	0	NA	Intergenic	Intergenic	29465	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
104229	chr17	80673551	80674080	+	0	NA	intron (NM_020761, intron 3 of 33)	HSMAR2|DNA|TcMar-Mariner	128977	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
173171	chr4	6701371	6702280	+	0	NA	Intergenic	AluSx1|SINE|Alu	7947	NM_005980	6286		NM_005980	ENSG00000163993	S100P	MIG9	S100 calcium binding protein P	protein-coding
26376	chr10	16779371	16780080	+	0	NA	intron (NM_012425, intron 3 of 8)	intron (NM_012425, intron 3 of 8)	37699	NM_012425	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
94303	chr17	28741221	28741930	+	0	NA	intron (NM_178170, intron 14 of 14)	intron (NM_178170, intron 14 of 14)	-2436	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
78002	chr15	89655101	89655630	+	0	NA	intron (NM_198525, intron 1 of 18)	CpG	102	NM_198525	374654		NM_198525	ENSG00000166813	KIF7	ACLS|AGBK|HLS2|JBTS12|MMEDF|UNQ340	kinesin family member 7	protein-coding
29358	chr10	69574471	69575180	+	0	NA	Intergenic	Intergenic	-1403	NM_020999	50674		NM_020999	ENSG00000122859	NEUROG3	Atoh5|Math4B|NGN-3|bHLHa7|ngn3	neurogenin 3	protein-coding
72478	chr15	32581801	32582000	+	0	NA	Intergenic	Intergenic	-11556	NM_001282494	643699		NM_001282494	ENSG00000232653	GOLGA8N	GOLGA8R	golgin A8 family member N	protein-coding
74915	chr15	63670151	63670450	+	0	NA	intron (NM_003922, intron 39 of 77)	intron (NM_003922, intron 39 of 77)	-69473	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
183316	chr5	76691851	76691950	+	0	NA	intron (NM_001285462, intron 18 of 23)	intron (NM_001285462, intron 18 of 23)	-20503	NR_028375	100302746		NR_028375		NCRUPAR	NCRNA00193|ncR-uPAR	non-protein coding RNA, upstream of F2R/PAR1	ncRNA
5389	chr1	25467201	25467950	+	0	NA	intron (NM_018202, intron 6 of 10)	intron (NM_018202, intron 6 of 10)	36678	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
126185	chr2	26728221	26728580	+	0	NA	exon (NM_002246, exon 2 of 2)	exon (NM_002246, exon 2 of 2)	35678	NM_002246	3777		NM_002246	ENSG00000171303	KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TASK1|TBAK1	potassium two pore domain channel subfamily K member 3	protein-coding
234343	chrX	15158501	15159200	+	0	NA	Intergenic	Intergenic	111233	NM_024087	140462		NM_024087	ENSG00000102048	ASB9	-	ankyrin repeat and SOCS box containing 9	protein-coding
13541	chr1	115086351	115086880	+	0	NA	intron (NM_001308315, intron 1 of 6)	intron (NM_001308315, intron 1 of 6)	2885	NM_001308315	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
27225	chr10	28991801	28992000	+	0	NA	Intergenic	Intergenic	145492	NR_164114	283080		NM_173577	ENSG00000232624	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	ncRNA
65150	chr14	45201601	45202250	+	0	NA	Intergenic	Intergenic	51277	NM_018353	55320		NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
195184	chr6	36031571	36031730	+	0	NA	intron (NM_139014, intron 1 of 10)	AluSx|SINE|Alu	3842	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
100843	chr17	64124671	64124830	+	0	NA	intron (NM_001433, intron 1 of 21)	L1MB8|LINE|L1	5394	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
193824	chr6	31477421	31477930	+	0	NA	Intergenic	Intergenic	6446	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
179535	chr4	184966001	184967200	+	0	NA	Intergenic	Intergenic	-28160	NR_039660	100616111		NR_039660	ENSG00000263458	MIR4455	-	microRNA 4455	ncRNA
215254	chr7	156942321	156943030	+	0	NA	Intergenic	CpG	-7037	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
225201	chr9	34075151	34075330	+	0	NA	Intergenic	AluY|SINE|Alu	-26041	NM_001370059	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
232523	chr9	136325951	136326300	+	0	NA	non-coding (NR_026964, exon 1 of 1)	non-coding (NR_026964, exon 1 of 1)	1198	NR_026964	26102		NR_026964	ENSG00000262075	DKFZP434A062	-	uncharacterized LOC26102	ncRNA
189140	chr5	171312401	171312980	+	0	NA	TTS (NM_021025)	TTS (NM_021025)	3442	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
212571	chr7	128904451	128905150	+	0	NA	intron (NM_199349, intron 5 of 20)	MER91B|DNA|hAT-Tip100	5909	NM_001366122	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
79050	chr16	96621	97930	+	0	NA	intron (NM_001243249, intron 7 of 11)	AluJb|SINE|Alu	19050	NM_001015052	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
102070	chr17	74935851	74936750	+	0	NA	intron (NM_001272005, intron 1 of 6)	CpG	402	NM_001272005	347741		NM_178233	ENSG00000182938	OTOP3	-	otopetrin 3	protein-coding
20281	chr1	196608471	196609230	+	0	NA	promoter-TSS (NM_198503)	promoter-TSS (NM_198503)	-410	NR_146057	343450		NM_198503	ENSG00000162687	KCNT2	DEE57|EIEE57|KCa4.2|SLICK|SLO2.1	potassium sodium-activated channel subfamily T member 2	protein-coding
187553	chr5	142780151	142780450	+	0	NA	intron (NM_001349547, intron 1 of 21)	L1ME4b|LINE|L1	9073	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
116312	chr19	17791271	17792280	+	0	NA	Intergenic	L1MB5|LINE|L1	-3363	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
156392	chr22	41107971	41108680	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluJo|SINE|Alu	15733	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
202918	chr6	160101451	160101830	+	0	NA	intron (NM_000876, intron 45 of 47)	intron (NM_000876, intron 45 of 47)	8558	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
29196	chr10	68977871	68978230	+	0	NA	intron (NM_004728, intron 12 of 14)	AluJo|SINE|Alu	-10753	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
16290	chr1	154165071	154165780	+	0	NA	3' UTR (NM_152263, exon 10 of 10)	3' UTR (NM_152263, exon 10 of 10)	-10309	NM_001159484	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
104047	chr17	80140221	80141000	+	0	NA	intron (NM_014740, intron 4 of 11)	AluY|SINE|Alu	6518	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
83338	chr16	25011551	25012280	+	0	NA	intron (NM_018054, intron 1 of 18)	L2c|LINE|L2	3454	NM_001006634	55114		NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
82858	chr16	21523251	21523550	+	0	NA	Intergenic	MIRc|SINE|MIR	-2956	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
162808	chr3	49120151	49121750	+	0	NA	promoter-TSS (NM_001199161)	promoter-TSS (NM_001199161)	-12	NM_001351105	10869		NM_006677	ENSG00000172046	USP19	ZMYND9	ubiquitin specific peptidase 19	protein-coding
234049	chrX	5480601	5480800	+	0	NA	Intergenic	L1PA2|LINE|L1	-745658	NR_136577	105373156		NR_136577		LOC105373156	-	uncharacterized LOC105373156	ncRNA
156143	chr22	40165501	40165830	+	0	NA	intron (NM_001024843, intron 4 of 23)	THE1C|LTR|ERVL-MaLR	-12260	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
14029	chr1	120741171	120741330	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	17311	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
97676	chr17	44248171	44248330	+	0	NA	TTS (NM_000342)	TTS (NM_000342)	19885	NM_000342	6521		NM_000342	ENSG00000004939	SLC4A1	AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR	solute carrier family 4 member 1 (Diego blood group)	protein-coding
226711	chr9	75139351	75139600	+	0	NA	intron (NM_012383, intron 8 of 9)	AluSz|SINE|Alu	50961	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
84074	chr16	29599971	29601140	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	-1290	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
168414	chr3	142279701	142280700	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	-54615	NM_001039547	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
123258	chr19	53364271	53364430	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-1355	NR_145447	170958		NM_001348156	ENSG00000203326	ZNF525	-	zinc finger protein 525	protein-coding
124738	chr2	6872601	6872800	+	0	NA	Intergenic	MER101-int|LTR|ERV1	-5077	NM_080657	91543		NM_080657	ENSG00000134321	RSAD2	SAND|cig33|cig5|vig1	radical S-adenosyl methionine domain containing 2	protein-coding
92680	chr17	12982071	12982630	+	0	NA	intron (NM_014859, intron 19 of 20)	intron (NM_014859, intron 19 of 20)	35677	NM_018127	60528		NM_018127	ENSG00000006744	ELAC2	COXPD17|ELC2|HPC2	elaC ribonuclease Z 2	protein-coding
157753	chr22	46673821	46675150	+	0	NA	intron (NM_001366660, intron 15 of 17)	intron (NM_001366660, intron 15 of 17)	54099	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
129509	chr2	69639351	69640230	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	3948	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
93515	chr17	19016621	19016950	+	0	NA	intron (NM_152351, intron 11 of 14)	intron (NM_152351, intron 11 of 14)	-12021	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
74727	chr15	63190401	63191030	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	1109	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
60139	chr13	39684201	39684740	+	0	NA	intron (NM_001145079, intron 8 of 18)	AluYe5|SINE|Alu	-20335	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
161484	chr3	42504171	42504330	+	0	NA	intron (NM_001251883, intron 1 of 9)	intron (NM_001251883, intron 1 of 9)	1607	NM_004624	7433		NM_004624	ENSG00000114812	VIPR1	HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R	vasoactive intestinal peptide receptor 1	protein-coding
16265	chr1	153989321	153989580	+	0	NA	Intergenic	AluY|SINE|Alu	-1305	NM_001349946	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
234192	chrX	12814471	12814730	+	0	NA	intron (NM_002765, intron 4 of 6)	intron (NM_002765, intron 4 of 6)	23188	NM_002765	5634		NM_002765	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
62062	chr13	92297321	92297580	+	0	NA	intron (NM_004466, intron 7 of 7)	LTR12C|LTR|ERV1	54757	NR_120382	100873970		NR_120382		GPC5-AS2	-	GPC5 antisense RNA 2	ncRNA
192797	chr6	26574951	26575250	+	0	NA	TTS (NR_134611)	TTS (NR_134611)	5776	NR_134611	105374988		NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
219967	chr8	89754401	89755000	+	0	NA	intron (NR_125822, intron 1 of 4)	L1ME3A|LINE|L1	3011	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
82151	chr16	14830721	14831050	+	0	NA	Intergenic	AluJr|SINE|Alu	-2829	NM_001004067	408050		NM_001004067	ENSG00000103226	NOMO3	Nomo	NODAL modulator 3	protein-coding
68170	chr14	75980201	75980500	+	0	NA	intron (NM_001329939, intron 2 of 7)	intron (NM_001329939, intron 2 of 7)	1645	NM_003239	7043		NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
42634	chr11	72242621	72243200	+	0	NA	intron (NM_005169, intron 1 of 2)	AluSz|SINE|Alu	1266	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
106502	chr18	18711151	18711250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2400613	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
3286	chr1	15290421	15290680	+	0	NA	intron (NM_052929, intron 4 of 30)	intron (NM_052929, intron 4 of 30)	43325	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
27672	chr10	33102021	33102480	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	14557	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
80974	chr16	3938151	3938450	+	0	NA	Intergenic	MER53|DNA|hAT	12144	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
99192	chr17	49496251	49496930	+	0	NA	intron (NM_002507, intron 1 of 5)	CpG	1297	NM_002507	4804		NM_002507	ENSG00000064300	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
9438	chr1	48775771	48775930	+	0	NA	intron (NM_001349795, intron 2 of 7)	intron (NM_001349795, intron 2 of 7)	1041	NM_024603	79656		NM_024603	ENSG00000162373	BEND5	C1orf165	BEN domain containing 5	protein-coding
157654	chr22	46146521	46147380	+	0	NA	Intergenic	Intergenic	-3576	NM_005036	5465		NM_005036	ENSG00000186951	PPARA	NR1C1|PPAR|PPAR-alpha|PPARalpha|hPPAR	peroxisome proliferator activated receptor alpha	protein-coding
197742	chr6	87161471	87161830	+	0	NA	intron (NM_015021, intron 1 of 7)	AluJo|SINE|Alu	6085	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
10929	chr1	84143871	84144500	+	0	NA	promoter-TSS (NM_001300916)	promoter-TSS (NM_001300916)	-86	NM_182948	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
6475	chr1	28331671	28332030	+	0	NA	intron (NM_017638, intron 2 of 2).2	AluSx|SINE|Alu	2810	NM_017638	54797		NM_017638	ENSG00000130772	MED18	SRB5|p28b	mediator complex subunit 18	protein-coding
210326	chr7	99493771	99494630	+	0	NA	exon (NM_032164, exon 3 of 3)	exon (NM_032164, exon 3 of 3)	6081	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
134942	chr2	151601901	151602100	+	0	NA	exon (NM_001164507, exon 88 of 182)	exon (NM_001164507, exon 88 of 182)	132476	NM_001271208	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
196152	chr6	42450451	42450900	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	1376	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
56597	chr12	118054871	118055730	+	0	NA	intron (NM_001278557, intron 1 of 8)	MER20|DNA|hAT-Charlie	5879	NM_018639	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
103921	chr17	79824201	79824400	+	0	NA	intron (NR_146504, intron 2 of 2)	AluSx|SINE|Alu	848	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
216282	chr8	12525521	12526450	+	0	NA	intron (NR_040091, intron 5 of 6)	HERVS71-int|LTR|ERV1	88972	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
55174	chr12	100204301	100204500	+	0	NA	intron (NR_135073, intron 10 of 10)	AluSz|SINE|Alu	3585	NR_048569	64431		NM_022496	ENSG00000075089	ACTR6	ARP6|CDA12|HSPC281|MSTP136|hARP6|hARPX	actin related protein 6	protein-coding
204244	chr7	2554021	2554480	+	0	NA	intron (NM_001350627, intron 2 of 12)	intron (NM_001350627, intron 2 of 12)	1274	NR_146879	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
33310	chr10	114829171	114829530	+	0	NA	intron (NM_001135051, intron 1 of 16)	MER41B|LTR|ERV1	7570	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
157904	chr22	49763421	49764830	+	0	NA	Intergenic	Intergenic	60206	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
41436	chr11	66074651	66075500	+	0	NA	intron (NM_018026, intron 1 of 23)	AluY|SINE|Alu	4803	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
216913	chr8	22702551	22703050	+	0	NA	Intergenic	L2a|LINE|L2	-9320	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
75685	chr15	67830471	67831100	+	0	NA	intron (NM_001365915, intron 4 of 8)	intron (NM_001365915, intron 4 of 8)	5276	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
142182	chr20	2876021	2876580	+	0	NA	intron (NM_001385311, intron 1 of 20)	L1ME4b|LINE|L1	2819	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
165705	chr3	102163021	102163280	+	0	NA	promoter-TSS (NR_135549)	promoter-TSS (NR_135549)	-555	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
61843	chr13	76879351	76880000	+	0	NA	TTS (NM_138444)	TTS (NM_138444)	6730	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
186841	chr5	139447501	139447700	+	0	NA	TTS (NR_121659)	TTS (NR_121659)	-8075	NM_152686	202052		NM_152686	ENSG00000170464	DNAJC18	-	DnaJ heat shock protein family (Hsp40) member C18	protein-coding
239250	chrY	13361701	13361980	+	0	NA	intron (NR_047646, intron 9 of 26)	intron (NR_047646, intron 9 of 26)	-117337	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
190466	chr5	180087971	180089000	+	0	NA	Intergenic	MER21B|LTR|ERVL	-16726	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
218994	chr8	63162571	63162930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	5692	NR_102684	101410533		NR_102684	ENSG00000270673	YTHDF3-DT	YTHDF3-AS1	YTHDF3 divergent transcript	ncRNA
20806	chr1	201191801	201192000	+	0	NA	intron (NM_001367841, intron 1 of 24)	intron (NM_001367841, intron 1 of 24)	1076	NM_001367841	91156		NM_178275	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin like and fibronectin type III domain containing 1	protein-coding
22363	chr1	217482471	217482630	+	0	NA	intron (NM_018040, intron 8 of 9)	L2a|LINE|L2	148540	NM_001297754	55105		NM_018040	ENSG00000092978	GPATCH2	CT110|GPATC2|PPP1R30|Pfa1	G-patch domain containing 2	protein-coding
143866	chr20	32544121	32544580	+	0	NA	intron (NM_001256798, intron 1 of 10)	L2|LINE|L2	34391	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
110374	chr19	1914401	1914800	+	0	NA	intron (NM_001329539, intron 1 of 5)	intron (NM_001329539, intron 1 of 5)	9201	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
4229	chr1	19476501	19478680	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	6705	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
6427	chr1	28170501	28170700	+	0	NA	intron (NM_001164722, intron 1 of 1)	AluJr4|SINE|Alu	6090	NM_000952	5724		NM_000952	ENSG00000169403	PTAFR	PAFR	platelet activating factor receptor	protein-coding
214462	chr7	150351751	150351850	+	0	NA	Intergenic	AluJr|SINE|Alu	-10171	NM_002889	5919		NM_002889	ENSG00000106538	RARRES2	HP10433|TIG2	retinoic acid receptor responder 2	protein-coding
141657	chr2	241765151	241765730	+	0	NA	intron (NM_001352824, intron 9 of 9)	intron (NM_001352824, intron 9 of 9)	-11382	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
25240	chr10	6036771	6037600	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	25182	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
164696	chr3	67657721	67658450	+	0	NA	intron (NR_109992, intron 1 of 6)	intron (NR_109992, intron 1 of 6)	3388	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
192542	chr6	25137701	25138930	+	0	NA	promoter-TSS (NR_002174)	promoter-TSS (NR_002174)	77	NR_027626	8418		NM_003570	ENSG00000293489	CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
98815	chr17	48351801	48352350	+	0	NA	intron (NM_001075099, intron 3 of 12)	A-rich|Low_complexity|Low_complexity	57728	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
43180	chr11	75398151	75398450	+	0	NA	Intergenic	AluJr|SINE|Alu	-1191	NM_001260507	6188		NM_001005	ENSG00000149273	RPS3	S3|uS3	ribosomal protein S3	protein-coding
77268	chr15	81409401	81409680	+	0	NA	intron (NR_120365, intron 6 of 6)	LTR12|LTR|ERV1	-35327	NM_001080532	342125		NM_181841	ENSG00000188869	TMC3	-	transmembrane channel like 3	protein-coding
197411	chr6	73520801	73522200	+	0	NA	promoter-TSS (NM_001402)	promoter-TSS (NM_001402)	-468	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
31193	chr10	91217921	91218300	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-2041	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
151528	chr21	46461901	46462700	+	0	NA	promoter-TSS (NR_046400)	promoter-TSS (NR_046400)	-171	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
202692	chr6	158805171	158805500	+	0	NA	intron (NM_003379, intron 1 of 12)	AluSc5|SINE|Alu	-12644	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
228691	chr9	107777151	107777650	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-287631	NM_001314052	9314		NM_004235	ENSG00000136826	KLF4	EZF|GKLF	KLF transcription factor 4	protein-coding
194322	chr6	32837921	32839330	+	0	NA	intron (NM_000544, intron 1 of 11)	CpG	114	NM_001290043	6891		NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
186347	chr5	134762501	134762700	+	0	NA	intron (NR_125341, intron 1 of 22)	AluSq2|SINE|Alu	3821	NM_001300860	9879		NM_014829	ENSG00000145833	DDX46	PRPF5|Prp5	DEAD-box helicase 46	protein-coding
32438	chr10	102582871	102583030	+	0	NA	intron (NM_001178133, intron 3 of 10)	intron (NM_001178133, intron 3 of 10)	-61529	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
17447	chr1	156684851	156684950	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-7493	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
219355	chr8	70334801	70335000	+	0	NA	intron (NM_001321703, intron 1 of 22)	AluSx|SINE|Alu	68490	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
49677	chr12	30157621	30157950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-373026	NM_175861	83857		NM_031920	ENSG00000133687	TMTC1	ARG99|OLF|TMTC1A	transmembrane O-mannosyltransferase targeting cadherins 1	protein-coding
141907	chr20	911901	912100	+	0	NA	intron (NM_001322809, intron 1 of 7)	intron (NM_001322809, intron 1 of 7)	4334	NM_001322809	51378		NM_015985	ENSG00000101280	ANGPT4	ANG3|ANG4	angiopoietin 4	protein-coding
229035	chr9	114324371	114324530	+	0	NA	intron (NM_000607, intron 3 of 5)	intron (NM_000607, intron 3 of 5)	1352	NM_000607	5004		NM_000607	ENSG00000229314	ORM1	A1AG1|AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
9904	chr1	54381551	54381850	+	0	NA	intron (NM_145716, intron 4 of 17)	MIRc|SINE|MIR	24694	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
93134	chr17	17729421	17730580	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	36302	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
186223	chr5	134387601	134388080	+	0	NA	intron (NM_003337, intron 4 of 5)	AluSz|SINE|Alu	16271	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
51205	chr12	50520321	50521130	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	15740	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
169561	chr3	170278651	170278750	+	0	NA	intron (NM_002740, intron 8 of 17)	MSTB|LTR|ERVL-MaLR	56276	NM_002740	5584		NM_002740	ENSG00000163558	PRKCI	DXS1179E|PKCI|nPKC-iota	protein kinase C iota	protein-coding
106935	chr18	26547651	26548100	+	0	NA	exon (NM_001142730, exon 1 of 5)	exon (NM_001142730, exon 1 of 5)	678	NM_001142730	284252		NM_198991	ENSG00000134504	KCTD1	C18orf5	potassium channel tetramerization domain containing 1	protein-coding
82410	chr16	16229721	16230250	+	0	NA	Intergenic	Intergenic	-2543	NM_001004067	408050		NM_001004067	ENSG00000103226	NOMO3	Nomo	NODAL modulator 3	protein-coding
152553	chr22	21004351	21004830	+	0	NA	intron (NR_027051, intron 1 of 1)	AluSx1|SINE|Alu	-2472	NM_030573	80764		NM_030573	ENSG00000184436	THAP7	-	THAP domain containing 7	protein-coding
207647	chr7	45060801	45061200	+	0	NA	intron (NM_001363458, intron 2 of 10)	L1MCa|LINE|L1	27969	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
90802	chr17	2215221	2216240	+	0	NA	intron (NM_001256827, intron 3 of 11)	GA-rich|Low_complexity|Low_complexity	-16948	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
137649	chr2	197423271	197423630	+	0	NA	intron (NM_001005526, intron 2 of 4)	Helitron3Na_Mam|RC|Helitron	11578	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
175669	chr4	76964771	76965130	+	0	NA	intron (NM_018243, intron 1 of 9)	intron (NM_018243, intron 1 of 9)	15198	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
49368	chr12	22391901	22392450	+	0	NA	Intergenic	Intergenic	-57461	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
1103	chr1	2043621	2043980	+	0	NA	Intergenic	Intergenic	6270	NR_135509	105378591		NR_135509	ENSG00000226969	PRKCZ-DT	-	PRKCZ divergent transcript	ncRNA
214575	chr7	150620201	150620880	+	0	NA	Intergenic	Intergenic	11845	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
199781	chr6	125988471	125989580	+	0	NA	intron (NM_001350583, intron 1 of 12)	intron (NM_001350583, intron 1 of 12)	2485	NM_001031712	60487		NM_021820	ENSG00000066651	TRMT11	C6orf75|MDS024|TRM11|TRMT11-1	tRNA methyltransferase 11 homolog	protein-coding
148759	chr21	8106901	8108830	+	0	NA	Intergenic	Intergenic	-89755	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
52233	chr12	54396351	54396650	+	0	NA	intron (NM_002205, intron 29 of 29)	intron (NM_002205, intron 29 of 29)	-5202	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
127372	chr2	39377571	39377730	+	0	NA	intron (NM_003618, intron 2 of 33)	MIRc|SINE|MIR	59635	NM_003618	8491		NM_003618	ENSG00000011566	MAP4K3	GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding
226442	chr9	71684571	71684800	+	0	NA	3' UTR (NM_001349784, exon 24 of 24)	3' UTR (NM_001349784, exon 24 of 24)	83828	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
154257	chr22	31618771	31619280	+	0	NA	TTS (NM_014775)	TTS (NM_014775)	2506	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
212820	chr7	130429071	130429230	+	0	NA	intron (NM_001257160, intron 1 of 2)	L3|LINE|CR1	11866	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
57030	chr12	120688851	120689630	+	0	NA	intron (NM_001303627, intron 1 of 4)	intron (NM_001303627, intron 1 of 4)	930	NM_001303627	9761		NM_014730	ENSG00000110917	MLEC	KIAA0152	malectin	protein-coding
60337	chr13	40734821	40735590	+	0	NA	intron (NM_005830, intron 6 of 6)	L1PA2|LINE|L1	-7318	NR_031723	100313896		NR_031723		MIR320D1	MIR320D-1|MIRN320D1|mir-320d-1	microRNA 320d-1	ncRNA
230041	chr9	127387821	127388980	+	0	NA	intron (NM_001286779, intron 26 of 28)	intron (NM_001286779, intron 26 of 28)	-8738	NM_001271711	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
164940	chr3	71226221	71227640	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	18147	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
175580	chr4	75661171	75661530	+	0	NA	intron (NM_203505, intron 2 of 11)	AluSx1|SINE|Alu	11809	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
86016	chr16	57481371	57481930	+	0	NA	intron (NM_001369618, intron 1 of 7)	intron (NM_001369618, intron 1 of 7)	-1273	NM_001369619	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
118144	chr19	34999471	35000600	+	0	NA	promoter-TSS (NM_001320035)	promoter-TSS (NM_001320035)	-288	NM_001320035	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
209449	chr7	76441801	76442850	+	0	NA	TTS (NM_001110354)	TTS (NM_001110354)	17375	NM_001110354	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
76231	chr15	73946401	73946600	+	0	NA	exon (NM_005576, exon 3 of 7)	exon (NM_005576, exon 3 of 7)	-18252	NR_040068	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
139447	chr2	223837071	223838200	+	0	NA	promoter-TSS (NR_110906)	promoter-TSS (NR_110906)	-53	NR_110905	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
197597	chr6	80338221	80338500	+	0	NA	intron (NM_000056, intron 9 of 10)	intron (NM_000056, intron 9 of 10)	231689	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
153737	chr22	29310121	29310430	+	0	NA	intron (NM_006478, intron 2 of 5)	intron (NM_006478, intron 2 of 5)	3252	NM_006478	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
166493	chr3	114306021	114306480	+	0	NA	intron (NM_173799, intron 3 of 3)	MLT2B3|LTR|ERVL	10319	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
48533	chr12	10209051	10209350	+	0	NA	Intergenic	L1MC5a|LINE|L1	-3677	NM_001363598	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
37559	chr11	18726501	18726780	+	0	NA	promoter-TSS (NM_173588)	promoter-TSS (NM_173588)	-452	NR_160413	283284		NM_173588	ENSG00000179057	IGSF22	IGFN2	immunoglobulin superfamily member 22	protein-coding
8773	chr1	42768951	42769500	+	0	NA	intron (NM_024097, intron 2 of 4)	AluSz|SINE|Alu	1976	NR_040733	79078		NM_024097	ENSG00000164008	C1orf50	-	chromosome 1 open reading frame 50	protein-coding
39946	chr11	62551401	62552550	+	0	NA	Intergenic	Intergenic	-5169	NM_001620	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
179902	chr5	679121	679880	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	13852	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
183537	chr5	80035051	80035530	+	0	NA	promoter-TSS (NM_001306214)	promoter-TSS (NM_001306214)	-58	NM_003248	7060		NM_003248	ENSG00000113296	THBS4	TSP-4|TSP4	thrombospondin 4	protein-coding
140424	chr2	233112651	233113280	+	0	NA	intron (NM_001017915, intron 2 of 26).2	L1MC4|LINE|L1	52623	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
91264	chr17	4004521	4005900	+	0	NA	3' UTR (NM_015113, exon 55 of 55)	3' UTR (NM_015113, exon 55 of 55)	28107	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
162977	chr3	49703351	49704650	+	0	NA	intron (NR_135218, intron 21 of 38)	intron (NR_135218, intron 21 of 38)	14443	NM_022064	63891		NM_022064	ENSG00000164068	RNF123	FP1477|KPC1	ring finger protein 123	protein-coding
64006	chr14	22494701	22495250	+	0	NA	Intergenic	Intergenic	-12016	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
182753	chr5	68284151	68284700	+	0	NA	intron (NM_181523, intron 7 of 15)	intron (NM_181523, intron 7 of 15)	-4094	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
217771	chr8	33317521	33318050	+	0	NA	Intergenic	Intergenic	155361	NM_032664	84750		NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding
100221	chr17	59219471	59219630	+	0	NA	promoter-TSS (NM_182569)	promoter-TSS (NM_182569)	-961	NM_001165993	284161		NM_182569	ENSG00000153982	GDPD1	GDE4	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding
24314	chr1	236862821	236863280	+	0	NA	intron (NM_000254, intron 21 of 32)	intron (NM_000254, intron 21 of 32)	67758	NM_000254	4548		NM_000254	ENSG00000116984	MTR	HMAG|MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
179652	chr4	189465321	189465900	+	0	NA	Intergenic	Intergenic	-193996	NR_121679	101928971		NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
237723	chrX	125295371	125295530	+	0	NA	Intergenic	Intergenic	-24421	NM_001195272	100129520		NM_001195272	ENSG00000282815	TEX13C	-	TEX13 family member C	protein-coding
171191	chr3	195690371	195690530	+	0	NA	intron (NR_122105, intron 2 of 4)	L1MC5a|LINE|L1	1952	NR_122105	440993		NM_001013714		MIR570HG	LINC00969	MIR570 host gene	ncRNA
61419	chr13	51814551	51815730	+	0	NA	3' UTR (NM_001351005, exon 4 of 4)	3' UTR (NM_001351005, exon 4 of 4)	-10977	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
65411	chr14	50823301	50824900	+	0	NA	TTS (NR_135258)	TTS (NR_135258)	2303	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
145544	chr20	44197171	44197330	+	0	NA	exon (NM_016470, exon 4 of 4)	exon (NM_016470, exon 4 of 4)	-10062	NM_175913	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
143898	chr20	32579921	32580180	+	0	NA	intron (NM_001256798, intron 1 of 10)	UCON132b|DNA|hAT-Tip100	5283	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
124390	chr19	58394871	58396000	+	0	NA	promoter-TSS (NM_001195135)	promoter-TSS (NM_001195135)	-655	NM_001195135	646862		NM_001195135	ENSG00000269855	RNF225	-	ring finger protein 225	protein-coding
120958	chr19	45701901	45702100	+	0	NA	intron (NM_017659, intron 6 of 6)	intron (NM_017659, intron 6 of 6)	9334	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
66282	chr14	61379421	61380300	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	58417	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
12085	chr1	99766351	99767250	+	0	NA	promoter-TSS (NM_001361041)	promoter-TSS (NM_001361041)	-165	NM_001361041	391059		NM_001013660	ENSG00000156869	FRRS1	SDFR2|SDR2	ferric chelate reductase 1	protein-coding
14399	chr1	144248521	144249000	+	0	NA	promoter-TSS (NR_027354).2	promoter-TSS (NR_027354).2	-555	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
125831	chr2	24357221	24357550	+	0	NA	intron (NM_147152, intron 1 of 29)	L1PA8A|LINE|L1	3151	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
40116	chr11	62820251	62820780	+	0	NA	intron (NM_001244666, intron 10 of 10)	AluY|SINE|Alu	11536	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
109424	chr19	701971	702130	+	0	NA	Intergenic	Intergenic	-6598	NM_214710	400668		NM_214710	ENSG00000185198	PRSS57	NSP4|PRSSL1|UNQ782	serine protease 57	protein-coding
218129	chr8	41579451	41579630	+	0	NA	intron (NM_001363197, intron 1 of 12)	intron (NM_001363197, intron 1 of 12)	1024	NM_001363197	137964		NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
5859	chr1	26733771	26734580	+	0	NA	intron (NM_139135, intron 4 of 19)	intron (NM_139135, intron 4 of 19)	38160	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
89863	chr16	89633901	89634730	+	0	NA	intron (NM_004413, intron 2 of 10)	AluY|SINE|Alu	13718	NM_004413	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
227973	chr9	95170771	95171130	+	0	NA	intron (NM_001243743, intron 6 of 14)	intron (NM_001243743, intron 6 of 14)	-84856	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA
18841	chr1	167708601	167708800	+	0	NA	TTS (NM_052862)	TTS (NM_052862)	-13282	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
159220	chr3	12903821	12904300	+	0	NA	intron (NM_014869, intron 12 of 13)	intron (NM_014869, intron 12 of 13)	-18849	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
172638	chr4	2540171	2540930	+	0	NA	intron (NM_001366318, intron 1 of 20)	AluY|SINE|Alu	3903	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
36751	chr11	9318351	9318750	+	0	NA	Intergenic	MER50|LTR|ERV1	-3957	NM_001165030	440026		NM_015012	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
164668	chr3	66997601	66999100	+	0	NA	promoter-TSS (NM_032505)	promoter-TSS (NM_032505)	43	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
182904	chr5	70332301	70332500	+	0	NA	intron (NR_027386, intron 3 of 5).2	intron (NR_027386, intron 3 of 5).2	22099	NR_134268	102724392		NR_134268		LINC02197	-	long intergenic non-protein coding RNA 2197	ncRNA
158930	chr3	10027701	10027900	+	0	NA	intron (NM_001374255, intron 1 of 9)	AluY|SINE|Alu	1363	NM_001319984	2177		NM_033084	ENSG00000144554	FANCD2	FA-D2|FA4|FACD|FAD|FAD2|FANCD	FA complementation group D2	protein-coding
125516	chr2	12727771	12729630	+	0	NA	intron (NM_021643, intron 2 of 2)	intron (NM_021643, intron 2 of 2)	-8667	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
120608	chr19	45028851	45028950	+	0	NA	exon (NM_006509, exon 7 of 11)	exon (NM_006509, exon 7 of 11)	-10145	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
148931	chr21	9812371	9812530	+	0	NA	intron (NR_038377, intron 1 of 5)	SST1|Satellite|centr	8611	NR_038377	441058		NM_001004347		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA
59579	chr13	27448871	27449030	+	0	NA	intron (NM_001166263, intron 1 of 5)	AluSz|SINE|Alu	1239	NM_001166262	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
60906	chr13	46168301	46169100	+	0	NA	intron (NM_002298, intron 1 of 15)	Plat_L3|LINE|CR1	13477	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
238432	chrX	150900471	150900630	+	0	NA	Intergenic	Intergenic	-1734	NM_001242614	83692		NM_031462	ENSG00000102181	CD99L2	CD99B|MIC2L1	CD99 molecule like 2	protein-coding
237624	chrX	124013601	124014180	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	52184	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
149221	chr21	25491351	25491450	+	0	NA	Intergenic	L3|LINE|CR1	-59699	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
181728	chr5	50686951	50687050	+	0	NA	intron (NM_024615, intron 2 of 25)	THE1B-int|LTR|ERVL-MaLR	19586	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
15516	chr1	150501221	150501580	+	0	NA	intron (NM_001271896, intron 9 of 13)	AluY|SINE|Alu	-6709	NM_022664	1893		NM_004425	ENSG00000143369	ECM1	URBWD	extracellular matrix protein 1	protein-coding
49924	chr12	39669471	39670050	+	0	NA	intron (NR_135051, intron 6 of 18)	L1PA4|LINE|L1	43577	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
63628	chr14	20665301	20665580	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-18737	NM_001145	283		NM_001145	ENSG00000214274	ANG	ALS9|HEL168|RAA1|RNASE4|RNASE5	angiogenin	protein-coding
18148	chr1	160753951	160754600	+	0	NA	3' UTR (NM_001282595, exon 6 of 6)	3' UTR (NM_001282595, exon 6 of 6)	15028	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
182654	chr5	67202021	67202280	+	0	NA	Intergenic	Intergenic	-5351	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
234076	chrX	8815471	8815650	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-14177	NM_174951	171482		NM_174951	ENSG00000183304	FAM9A	TEX39A	family with sequence similarity 9 member A	protein-coding
162124	chr3	46935701	46935900	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	40701	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
29013	chr10	63528401	63528600	+	0	NA	intron (NM_001001330, intron 1 of 7)	L2a|LINE|L2	-6610	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
40323	chr11	63909601	63910730	+	0	NA	3' UTR (NM_017490, exon 18 of 18)	3' UTR (NM_017490, exon 18 of 18)	6999	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
34670	chr10	133350751	133350850	+	0	NA	intron (NM_145202, intron 2 of 4)	intron (NM_145202, intron 2 of 4)	3427	NM_145202	118471		NM_145202	ENSG00000165828	PRAP1	PRO1195|UPA	proline rich acidic protein 1	protein-coding
216105	chr8	11163551	11164050	+	0	NA	intron (NR_138153, intron 1 of 2)	MIR|SINE|MIR	37566	NR_138152	286046		NM_173683	ENSG00000171044	XKR6	C8orf21|C8orf5|C8orf7|XRG6	XK related 6	protein-coding
88259	chr16	82655271	82656550	+	0	NA	intron (NM_001220488, intron 2 of 14)	L2b|LINE|L2	28941	NM_001220492	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
160995	chr3	37256471	37256980	+	0	NA	intron (NM_002078, intron 2 of 23)	intron (NM_002078, intron 2 of 23)	-12530	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
82657	chr16	19517371	19517850	+	0	NA	intron (NM_016641, intron 1 of 5)	intron (NM_016641, intron 1 of 5)	4488	NM_016641	51573		NM_016641	ENSG00000006007	GDE1	363E6.2|MIR16	glycerophosphodiester phosphodiesterase 1	protein-coding
40475	chr11	64236001	64236400	+	0	NA	intron (NM_003377, intron 3 of 6)	intron (NM_003377, intron 3 of 6)	1616	NM_003377	7423		NM_003377	ENSG00000173511	VEGFB	VEGFL|VRF	vascular endothelial growth factor B	protein-coding
142205	chr20	3041371	3042200	+	0	NA	Intergenic	Intergenic	-1837	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
46021	chr11	122628921	122629330	+	0	NA	Intergenic	Intergenic	-26597	NM_001363365	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
159118	chr3	12589671	12590030	+	0	NA	intron (NR_148942, intron 12 of 16)	AluSg4|SINE|Alu	-28851	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
119198	chr19	39437251	39437900	+	0	NA	Intergenic	AluSz|SINE|Alu	-1626	NM_001363860	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
100433	chr17	60863721	60865000	+	0	NA	intron (NM_001353144, intron 7 of 25)	LTR73|LTR|ERV1	186509	NM_001330414	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
235763	chrX	49030001	49030550	+	0	NA	exon (NM_006521, exon 10 of 10)	exon (NM_006521, exon 10 of 10)	13082	NM_006521	7030		NM_006521	ENSG00000068323	TFE3	MRXSPF|RCCP2|RCCX1|TFEA|bHLHe33	transcription factor binding to IGHM enhancer 3	protein-coding
197579	chr6	79913471	79913700	+	0	NA	Intergenic	Intergenic	33968	NM_022726	6785		NM_022726	ENSG00000118402	ELOVL4	ADMD|CT118|ISQMR|SCA34|STGD2|STGD3	ELOVL fatty acid elongase 4	protein-coding
115281	chr19	14561651	14562600	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	9941	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
33049	chr10	110859371	110859630	+	0	NA	Intergenic	Intergenic	11404	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
116737	chr19	18468071	18468250	+	0	NA	intron (NM_006532, intron 2 of 11)	(CA)n|Simple_repeat|Simple_repeat	-30027	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
163413	chr3	50549921	50550680	+	0	NA	Intergenic	Intergenic	17447	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
221771	chr8	127917601	127918250	+	0	NA	intron (NR_003367, intron 2 of 8)	intron (NR_003367, intron 2 of 8)	30798	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
211973	chr7	112800251	112801080	+	0	NA	Intergenic	LTR32|LTR|ERVL	-10272	NM_001287497	64418		NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
66966	chr14	65949821	65950280	+	0	NA	Intergenic	Intergenic	478948	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
124529	chr2	235551	236000	+	0	NA	intron (NR_104225, intron 4 of 9)	intron (NR_104225, intron 4 of 9)	20565	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
7557	chr1	35080601	35080950	+	0	NA	intron (NM_001319955, intron 1 of 8)	intron (NM_001319955, intron 1 of 8)	1390	NM_024772	79830		NM_024772	ENSG00000197056	ZMYM1	MYM	zinc finger MYM-type containing 1	protein-coding
59320	chr13	24307601	24308400	+	0	NA	TTS (NM_001286793)	TTS (NM_001286793)	834	NM_001303138	338872		NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and TNF related 9	protein-coding
21984	chr1	209692701	209693300	+	0	NA	intron (NM_181755, intron 1 of 6)	intron (NM_181755, intron 1 of 6)	6820	NM_181755	3290		NM_005525	ENSG00000117594	HSD11B1	11-DH|11-beta-HSD1|CORTRD2|HDL|HSD11|HSD11B|HSD11L|SDR26C1	hydroxysteroid 11-beta dehydrogenase 1	protein-coding
141422	chr2	240984551	240985080	+	0	NA	intron (NM_001351305, intron 28 of 31)	(CACA)n|Simple_repeat|Simple_repeat	-13803	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
3237	chr1	13789671	13790330	+	0	NA	intron (NM_012231, intron 8 of 9)	intron (NM_012231, intron 8 of 9)	40585	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
219948	chr8	89241301	89241900	+	0	NA	Intergenic	Intergenic	516111	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
174450	chr4	39706071	39706230	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluY|SINE|Alu	8014	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
231921	chr9	133106401	133106600	+	0	NA	intron (NM_001271775, intron 8 of 17)	intron (NM_001271775, intron 8 of 17)	14740	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
42018	chr11	67418271	67418430	+	0	NA	intron (NM_001166222, intron 3 of 9)	intron (NM_001166222, intron 3 of 9)	2672	NM_001166222	57571		NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
17826	chr1	159892821	159893330	+	0	NA	intron (NM_012337, intron 2 of 11)	intron (NM_012337, intron 2 of 11)	7004	NR_130464	100422852		NR_130464	ENSG00000266458	MIR4259	-	microRNA 4259	ncRNA
125712	chr2	20447811	20448930	+	0	NA	3' UTR (NM_004040, exon 1 of 1)	3' UTR (NM_004040, exon 1 of 1)	1296	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
93840	chr17	20992601	20993580	+	0	NA	Intergenic	Intergenic	49921	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
150383	chr21	42284071	42284430	+	0	NA	intron (NM_207628, intron 8 of 16)	intron (NM_207628, intron 8 of 16)	31159	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
149433	chr21	31394421	31395080	+	0	NA	intron (NM_001353690, intron 1 of 27)	(CA)n|Simple_repeat|Simple_repeat	-50396	NM_001353687	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
15712	chr1	151012121	151012630	+	0	NA	intron (NR_130130, intron 1 of 3)	MER94|DNA|hAT-Blackjack	3926	NR_130135	58497		NM_021222	ENSG00000143363	PRUNE1	DRES-17|DRES17|H-PRUNE|HTCD37|NMIHBA|PRUNE	prune exopolyphosphatase 1	protein-coding
205501	chr7	17949651	17950500	+	0	NA	Intergenic	MIRb|SINE|MIR	-9567	NM_001350868	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
132672	chr2	108778801	108779350	+	0	NA	intron (NM_006267, intron 25 of 28)	intron (NM_006267, intron 25 of 28)	-7675	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
53763	chr12	68673471	68674230	+	0	NA	TTS (NR_038930)	TTS (NR_038930)	13009	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
115000	chr19	14054671	14055630	+	0	NA	exon (NM_001367327, exon 5 of 5)	exon (NM_001367327, exon 5 of 5)	2488	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
235664	chrX	48550301	48550500	+	0	NA	intron (NR_145499, intron 4 of 6)	L1M5|LINE|L1	10686	NM_002536	4943		NM_002536	ENSG00000068354	TBC1D25	MG81|OATL1	TBC1 domain family member 25	protein-coding
154814	chr22	37020971	37021530	+	0	NA	intron (NM_021126, intron 1 of 2)	intron (NM_021126, intron 1 of 2)	-1067	NM_001270483	7263		NM_003312	ENSG00000128311	TST	RDS	thiosulfate sulfurtransferase	protein-coding
114894	chr19	13911601	13911800	+	0	NA	intron (NM_017721, intron 2 of 28)	AluSz|SINE|Alu	5499	NM_017721	54862		NM_017721	ENSG00000132024	CC2D1A	Aki-1|FREUD-1|Freud-1/Aki1|Lgd2|MRT3|TAPE	coiled-coil and C2 domain containing 1A	protein-coding
104068	chr17	80216921	80217180	+	0	NA	exon (NM_000199, exon 2 of 8)	exon (NM_000199, exon 2 of 8)	3283	NM_001352921	6448		NM_000199	ENSG00000181523	SGSH	HSS|MPS3A|SFMD	N-sulfoglucosamine sulfohydrolase	protein-coding
152085	chr22	19762221	19762980	+	0	NA	intron (NM_080646, intron 3 of 8)	intron (NM_080646, intron 3 of 8)	1822	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
122349	chr19	49306771	49306930	+	0	NA	intron (NM_014037, intron 7 of 11)	L1ME3B|LINE|L1	2018	NR_036209	100422979		NR_036209	ENSG00000265407	MIR4324	mir-4324	microRNA 4324	ncRNA
218272	chr8	42266071	42267100	+	0	NA	intron (NR_125823, intron 1 of 2)	MER41A|LTR|ERV1	4376	NR_125823	101929897		NR_125823	ENSG00000253408	IKBKB-DT	ALAL-1|IKBKBAS	IKBKB divergent transcript	ncRNA
14691	chr1	145881971	145882330	+	0	NA	intron (NM_144698, intron 1 of 13)	AluY|SINE|Alu	3716	NM_144698	148741		NM_144698	ENSG00000198483	ANKRD35	-	ankyrin repeat domain 35	protein-coding
165936	chr3	107540801	107541000	+	0	NA	intron (NM_020235, intron 2 of 16)	intron (NM_020235, intron 2 of 16)	17938	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
87185	chr16	69382951	69383050	+	0	NA	intron (NM_005652, intron 3 of 9)	intron (NM_005652, intron 3 of 9)	3007	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
103558	chr17	78672851	78673150	+	0	NA	Intergenic	MSTC-int|LTR|ERVL-MaLR	-40943	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
146818	chr20	51386571	51387430	+	0	NA	TTS (NM_001258296)	TTS (NM_001258296)	65977	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
32793	chr10	106850151	106850330	+	0	NA	intron (NM_001206572, intron 2 of 26)	L1PA2|LINE|L1	314466	NM_001013031	114815		NM_052918	ENSG00000108018	SORCS1	hSorCS	sortilin related VPS10 domain containing receptor 1	protein-coding
167244	chr3	128492501	128493800	+	0	NA	promoter-TSS (NM_032638)	promoter-TSS (NM_032638)	51	NM_032638	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
55921	chr12	109845101	109845900	+	0	NA	Intergenic	(GGCGCA)n|Simple_repeat|Simple_repeat	-12102	NM_021625	59341		NM_021625	ENSG00000111199	TRPV4	BCYM3|CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC	transient receptor potential cation channel subfamily V member 4	protein-coding
80828	chr16	3483101	3483300	+	0	NA	intron (NM_001317097, intron 4 of 5)	intron (NM_001317097, intron 4 of 5)	2269	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
51929	chr12	53709521	53709780	+	0	NA	non-coding (NR_026554, exon 14 of 14)	non-coding (NR_026554, exon 14 of 14)	17802	NR_026554	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
192746	chr6	26403921	26404200	+	0	NA	intron (NM_194441, intron 1 of 9)	intron (NM_194441, intron 1 of 9)	1785	NM_001145009	11119		NM_007048	ENSG00000026950	BTN3A1	BT3.1|BTF5|BTN3.1|CD277	butyrophilin subfamily 3 member A1	protein-coding
41574	chr11	66333871	66334030	+	0	NA	exon (NM_001363559, exon 7 of 10)	exon (NM_001363559, exon 7 of 10)	2484	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
109209	chr19	461801	462650	+	0	NA	Intergenic	CpG	-1229	NM_012435	25759		NM_012435	ENSG00000129946	SHC2	SCK|SHCB|SLI	SHC adaptor protein 2	protein-coding
239207	chrY	12922201	12922400	+	0	NA	Intergenic	Intergenic	16595	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
122043	chr19	48643371	48643530	+	0	NA	intron (NR_136241, intron 3 of 8)	AluSg|SINE|Alu	2737	NM_001217	770		NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
97132	chr17	42543851	42544350	+	0	NA	exon (NM_000263, exon 6 of 6)	exon (NM_000263, exon 6 of 6)	7859	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
80121	chr16	2035601	2036130	+	0	NA	intron (NM_001252076, intron 1 of 5)	intron (NM_001252076, intron 1 of 5)	2571	NM_001252075	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
7855	chr1	36372801	36373000	+	0	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	13024	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
26866	chr10	24928201	24928600	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	24206	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
147186	chr20	56535421	56535680	+	0	NA	intron (NM_001013646, intron 1 of 1)	AluSx1|SINE|Alu	2304	NM_001013646	388799		NM_001013646	ENSG00000213714	FAM209B	C20orf107|dJ1153D9.4	family with sequence similarity 209 member B	protein-coding
215311	chr7	157340021	157341030	+	0	NA	intron (NM_001363676, intron 1 of 6)	intron (NM_001363676, intron 1 of 6)	3521	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
161275	chr3	39281421	39281680	+	0	NA	promoter-TSS (NM_001171171)	promoter-TSS (NM_001171171)	185	NM_001171174	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
186431	chr5	135977501	135977780	+	0	NA	Intergenic	Intergenic	-22657	NM_002302	3950		NM_002302	ENSG00000145826	LECT2	chm-II|chm2	leukocyte cell derived chemotaxin 2	protein-coding
104096	chr17	80267501	80268230	+	0	NA	intron (NM_020954, intron 2 of 16)	AluSz|SINE|Alu	7013	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
61884	chr13	77307071	77307230	+	0	NA	intron (NM_015057, intron 1 of 82)	intron (NM_015057, intron 1 of 82)	19944	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
120870	chr19	45537901	45538300	+	0	NA	intron (NM_001017989, intron 1 of 1)	AluSx3|SINE|Alu	30621	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
126202	chr2	26782701	26782930	+	0	NA	Intergenic	AluJo|SINE|Alu	-3200	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
216564	chr8	21909271	21910030	+	0	NA	exon (NM_003974, exon 5 of 5)	exon (NM_003974, exon 5 of 5)	4040	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
120345	chr19	43577071	43578080	+	0	NA	intron (NM_001193621, intron 2 of 5)	intron (NM_001193621, intron 2 of 5)	775	NM_001193621	390940		NM_001193621	ENSG00000234465	PINLYP	-	phospholipase A2 inhibitor and LY6/PLAUR domain containing	protein-coding
150089	chr21	37415001	37416550	+	0	NA	intron (NM_101395, intron 2 of 12)	intron (NM_101395, intron 2 of 12)	-3130	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
22001	chr1	209771721	209773000	+	0	NA	intron (NM_001287754, intron 1 of 6)	MLT1B|LTR|ERVL-MaLR	3795	NM_001287754	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
219589	chr8	79880101	79880500	+	0	NA	Intergenic	Intergenic	-8563	NR_110954	101927040		NR_110954	ENSG00000249328	LOC101927040	-	uncharacterized LOC101927040	ncRNA
12959	chr1	110880701	110882000	+	0	NA	intron (NM_001040033, intron 2 of 8)	L1ME1|LINE|L1	8202	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
128175	chr2	53767401	53768550	+	0	NA	exon (NM_001008708, exon 1 of 3)	exon (NM_001008708, exon 1 of 3)	171	NM_001008708	494143		NM_001008708	ENSG00000143942	CHAC2	GCG1	ChaC glutathione specific gamma-glutamylcyclotransferase 2	protein-coding
111372	chr19	3699911	3701430	+	0	NA	promoter-TSS (NM_012398)	promoter-TSS (NM_012398)	-202	NM_012398	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
162999	chr3	49729771	49730130	+	0	NA	intron (NM_153273, intron 4 of 5)	AluSx1|SINE|Alu	-5976	NM_013334	29925		NM_013334	ENSG00000173540	GMPPB	LGMDR19|MDDGA14|MDDGB14|MDDGC14	GDP-mannose pyrophosphorylase B	protein-coding
198823	chr6	109081601	109081800	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	13146	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
177629	chr4	121187371	121187530	+	0	NA	intron (NM_001128843, intron 2 of 12)	intron (NM_001128843, intron 2 of 12)	-23129	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
222324	chr8	133516621	133517380	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	54887	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
140209	chr2	231707901	231708900	+	0	NA	promoter-TSS (NM_001099285)	promoter-TSS (NM_001099285)	-125	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
130480	chr2	85557501	85557700	+	0	NA	TTS (NM_001311312)	TTS (NM_001311312)	3893	NM_001311312	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
139331	chr2	219557551	219558550	+	0	NA	exon (NM_001173431, exon 11 of 14)	exon (NM_001173431, exon 11 of 14)	-8903	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
81271	chr16	4640571	4641350	+	0	NA	intron (NM_001142291, intron 1 of 15)	intron (NM_001142291, intron 1 of 15)	16134	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
85279	chr16	48597471	48598450	+	0	NA	intron (NM_153029, intron 1 of 6)	MER21-int|LTR|ERVL	12220	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
219660	chr8	80492651	80493300	+	0	NA	intron (NM_023929, intron 1 of 6)	AluSx1|SINE|Alu	6749	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
193108	chr6	28938801	28939000	+	0	NA	Intergenic	HAL1|LINE|L1	-4884	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
15224	chr1	149493871	149494030	+	0	NA	intron (NM_001351365, intron 16 of 92)	intron (NM_001351365, intron 16 of 92)	18052	NM_001351365	101060226		NM_001351365	ENSG00000271383	NBPF19	-	NBPF member 19	protein-coding
34521	chr10	132684371	132685130	+	0	NA	intron (NM_001321042, intron 1 of 12)	intron (NM_001321042, intron 1 of 12)	3475	NM_001321042	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
84246	chr16	30003651	30004150	+	0	NA	intron (NR_134855, intron 9 of 10)	intron (NR_134855, intron 9 of 10)	7127	NM_003586	8448		NM_003586	ENSG00000149927	DOC2A	Doc2	double C2 domain alpha	protein-coding
68527	chr14	89028701	89028900	+	0	NA	Intergenic	Intergenic	204149	NM_001366535	123016		NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
119166	chr19	39400921	39403100	+	0	NA	Intergenic	AluJb|SINE|Alu	-4837	NM_003407	7538		NM_003407	ENSG00000128016	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding
27136	chr10	28294251	28294550	+	0	NA	intron (NM_001318170, intron 1 of 16)	intron (NM_001318170, intron 1 of 16)	-5050	NR_107053	102465880		NR_107053	ENSG00000275036	MIR8086	hsa-mir-8086	microRNA 8086	ncRNA
179427	chr4	184288071	184289180	+	0	NA	Intergenic	Intergenic	65352	NR_040108	728175		NR_040108	ENSG00000180712	LINC02363	-	long intergenic non-protein coding RNA 2363	ncRNA
224544	chr9	19367301	19368100	+	0	NA	intron (NM_001330640, intron 30 of 32)	AluSz|SINE|Alu	12536	NM_001010	6194		NM_001010	ENSG00000137154	RPS6	S6|eS6	ribosomal protein S6	protein-coding
96862	chr17	42039671	42040480	+	0	NA	exon (NM_001358661, exon 3 of 3)	exon (NM_001358661, exon 3 of 3)	10526	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
210293	chr7	99436701	99437350	+	0	NA	intron (NM_001198879, intron 2 of 8)	AluJr4|SINE|Alu	1773	NM_015545	26024		NM_015545	ENSG00000106246	PTCD1	-	pentatricopeptide repeat domain 1	protein-coding
139004	chr2	218365221	218365680	+	0	NA	intron (NM_001320865, intron 7 of 9)	intron (NM_001320865, intron 7 of 9)	2452	NR_110573	101928513		NR_110573	ENSG00000225062	CATIP-AS1	-	CATIP antisense RNA 1	ncRNA
10205	chr1	62135821	62136080	+	0	NA	intron (NM_176877, intron 41 of 42)	intron (NM_176877, intron 41 of 42)	-57094	NR_036059	100422946		NR_036059	ENSG00000283690	MIR3116-2	-	microRNA 3116-2	ncRNA
59090	chr13	21074651	21075350	+	0	NA	Intergenic	Intergenic	-13414	NM_014572	26524		NM_014572	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
122376	chr19	49387751	49388600	+	0	NA	promoter-TSS (NR_110729)	promoter-TSS (NR_110729)	-74	NM_144688	147872		NM_144688	ENSG00000161609	KASH5	CCDC155|POF22|SPGF88	KASH domain containing 5	protein-coding
44822	chr11	113896221	113896650	+	0	NA	Intergenic	Intergenic	-8361	NM_006028	9177		NM_006028	ENSG00000149305	HTR3B	5-HT3B	5-hydroxytryptamine receptor 3B	protein-coding
207940	chr7	51123601	51123880	+	0	NA	intron (NM_001346441, intron 6 of 12)	intron (NM_001346441, intron 6 of 12)	193069	NM_001346441	23242		NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
154200	chr22	31402501	31402780	+	0	NA	intron (NM_004147, intron 2 of 8)	AluJb|SINE|Alu	3036	NM_004147	4733		NM_004147	ENSG00000185721	DRG1	NEDD3|TANALS	developmentally regulated GTP binding protein 1	protein-coding
44993	chr11	116955301	116956050	+	0	NA	intron (NM_001281748, intron 2 of 24)	intron (NM_001281748, intron 2 of 24)	-117725	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
62973	chr13	112293701	112293900	+	0	NA	Intergenic	Intergenic	-19667	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
104404	chr17	81049051	81050850	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	-7784	NM_001385147	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
186396	chr5	135325171	135325930	+	0	NA	intron (NR_161235, intron 3 of 5)	intron (NR_161235, intron 3 of 5)	73681	NM_138610	9555		NM_004893	ENSG00000113648	MACROH2A1	H2A.y|H2A/y|H2AF12M|H2AFY|MACROH2A1.1|mH2A1|macroH2A1.2	macroH2A.1 histone	protein-coding
226832	chr9	77819351	77820050	+	0	NA	intron (NM_002072, intron 2 of 6)	intron (NM_002072, intron 2 of 6)	-171378	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
198241	chr6	99392521	99392930	+	0	NA	intron (NM_017421, intron 1 of 6)	AluSx1|SINE|Alu	1470	NM_017421	51805		NM_017421	ENSG00000132423	COQ3	DHHBMT|DHHBMTASE|UG0215E05|bA9819.1	coenzyme Q3, methyltransferase	protein-coding
183425	chr5	78358671	78359180	+	0	NA	non-coding (NR_105014, exon 2 of 2)	non-coding (NR_105014, exon 2 of 2)	1616	NR_105014	728769		NR_105014	ENSG00000245556	SCAMP1-AS1	-	SCAMP1 antisense RNA 1	ncRNA
5003	chr1	24393871	24394030	+	0	NA	intron (NM_001199014, intron 2 of 9)	L1ME3A|LINE|L1	-19537	NM_001322854	57185		NM_020448	ENSG00000001461	NIPAL3	DJ462O23.2|NPAL3|SLC57A5	NIPA like domain containing 3	protein-coding
91497	chr17	4908151	4908450	+	0	NA	Intergenic	Intergenic	-5202	NM_000080	1145		NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1A1|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|FIM1|FIMG|FIMG1|MGI|SCCMS	cholinergic receptor nicotinic epsilon subunit	protein-coding
59065	chr13	20772551	20774380	+	0	NA	intron (NM_001318939, intron 1 of 4)	CpG	493	NR_134934	221143		NM_174928	ENSG00000150456	EEF1AKMT1	ESP13|N6AMT2|eEF1A-KMT	EEF1A lysine methyltransferase 1	protein-coding
164647	chr3	66490121	66490600	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	9694	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
89425	chr16	88925171	88925400	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	-13986	NR_168285	100129697		NM_001290330		LOC100129697	-	uncharacterized LOC100129697	ncRNA
181539	chr5	43072451	43072550	+	0	NA	intron (NR_102752, intron 2 of 2)	AluSp|SINE|Alu	-5061	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
991	chr1	1838451	1838550	+	0	NA	intron (NM_001282539, intron 1 of 10)	AluY|SINE|Alu	52587	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
9191	chr1	45607471	45608600	+	0	NA	exon (NM_002482, exon 6 of 15)	exon (NM_002482, exon 6 of 15)	16019	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
7233	chr1	32333171	32334290	+	0	NA	TTS (NM_004964)	TTS (NM_004964)	2503	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
7385	chr1	32894801	32895430	+	0	NA	TTS (NM_002143)	TTS (NM_002143)	6274	NM_001329722	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
190775	chr6	509671	510130	+	0	NA	intron (NM_018303, intron 23 of 27)	intron (NM_018303, intron 23 of 27)	118148	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
151865	chr22	18610101	18610930	+	0	NA	exon (NM_015672, exon 1 of 1)	exon (NM_015672, exon 1 of 1)	1404	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
139837	chr2	230434371	230435300	+	0	NA	intron (NM_001080391, intron 2 of 28)	L2a|LINE|L2	18079	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
3553	chr1	16152421	16152680	+	0	NA	intron (NM_004431, intron 1 of 16)	intron (NM_004431, intron 1 of 16)	3519	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
209839	chr7	89607601	89608070	+	0	NA	Intergenic	Intergenic	-511565	NR_003551	442523		NR_003551	ENSG00000291119	DPY19L2P4	-	DPY19L2 pseudogene 4	pseudo
144201	chr20	34305671	34305830	+	0	NA	intron (NM_001161766, intron 1 of 9)	Charlie7|DNA|hAT-Charlie	-2395	NM_000687	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
85759	chr16	56861351	56861780	+	0	NA	Intergenic	Intergenic	3047	NR_029680	406930		NR_029680	ENSG00000207649	MIR138-2	MIRN138-2|mir-138-2	microRNA 138-2	ncRNA
81751	chr16	11395871	11396800	+	0	NA	intron (NM_001370704, intron 54 of 66)	intron (NM_001370704, intron 54 of 66)	50876	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
232090	chr9	133619751	133620350	+	0	NA	Intergenic	Intergenic	-10661	NM_001080515	642968		NM_001080515	ENSG00000196990	FAM163B	C9orf166	family with sequence similarity 163 member B	protein-coding
153312	chr22	24231001	24231750	+	0	NA	intron (NM_001302464, intron 5 of 11)	G-rich|Low_complexity|Low_complexity	13767	NM_001302465	2687		NM_004121	ENSG00000099998	GGT5	GGL|GGT 5|GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
113392	chr19	9151221	9151880	+	0	NA	intron (NM_001190791, intron 1 of 5)	intron (NM_001190791, intron 1 of 5)	11153	NR_102435	57693		NM_020933	ENSG00000130803	ZNF317	-	zinc finger protein 317	protein-coding
89373	chr16	88789471	88789950	+	0	NA	Intergenic	AluJo|SINE|Alu	-4490	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
106706	chr18	23450921	23451750	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1952	NM_003831	8780		NM_003831	ENSG00000101782	RIOK3	SUDD	RIO kinase 3	protein-coding
139496	chr2	224529151	224529800	+	0	NA	intron (NM_003590, intron 3 of 15)	AluY|SINE|Alu	40480	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
141950	chr20	1281721	1281980	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	15556	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
40093	chr11	62795051	62795500	+	0	NA	intron (NM_006362, intron 17 of 20)	AluSc|SINE|Alu	-2504	NR_106769	102465257		NR_106769	ENSG00000274066	MIR6514	hsa-mir-6514|mir-6514	microRNA 6514	ncRNA
197546	chr6	79074621	79074930	+	0	NA	intron (NM_017934, intron 4 of 39)	intron (NM_017934, intron 4 of 39)	3479	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
205386	chr7	15547471	15547700	+	0	NA	intron (NM_001004320, intron 2 of 12)	L1PA2|LINE|L1	14430	NM_001004320	392636		NM_001004320	ENSG00000187546	AGMO	TMEM195	alkylglycerol monooxygenase	protein-coding
23715	chr1	231866721	231867000	+	0	NA	TTS (NM_001012959)	TTS (NM_001012959)	-48343	NR_002227	27184		NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2	ncRNA
187085	chr5	140182871	140183230	+	0	NA	intron (NM_032412, intron 1 of 2)	intron (NM_032412, intron 1 of 2)	7862	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
174922	chr4	49114371	49114750	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	127918	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
46391	chr11	126304851	126305280	+	0	NA	intron (NM_001350236, intron 1 of 5)	intron (NM_001350236, intron 1 of 5)	1005	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
154081	chr22	30890471	30891150	+	0	NA	exon (NM_001282742, exon 6 of 12)	exon (NM_001282742, exon 6 of 12)	9129	NM_001282742	23762		NM_030758	ENSG00000184792	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
5493	chr1	25710801	25711000	+	0	NA	intron (NM_001385185, intron 1 of 10)	MIR3|SINE|MIR	14745	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
23674	chr1	231356751	231357050	+	0	NA	Intergenic	AluSx|SINE|Alu	18607	NM_032018	83932		NM_032018	ENSG00000010072	SPRTN	C1orf124|DVC1|PRO4323|spartan	SprT-like N-terminal domain	protein-coding
163295	chr3	50334771	50334930	+	0	NA	intron (NM_001206957, intron 1 of 4)	intron (NM_001206957, intron 1 of 4)	2600	NM_170713	11186		NM_007182	ENSG00000068028	RASSF1	123F2|NORE2A|RASSF1A|RDA32|REH3P21	Ras association domain family member 1	protein-coding
151601	chr22	11701501	11701780	+	0	NA	Intergenic	ACRO1|Satellite|acro	-195766	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
212419	chr7	128211101	128211500	+	0	NA	Intergenic	Intergenic	3428	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
18212	chr1	160991421	160991800	+	0	NA	Intergenic	AluY|SINE|Alu	29542	NM_001348091	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
63827	chr14	21476471	21478230	+	0	NA	promoter-TSS (NM_001163380)	promoter-TSS (NM_001163380)	155	NM_001303523	9878		NM_014828	ENSG00000092203	TOX4	C14orf92|KIAA0737|LCP1|MIG7	TOX high mobility group box family member 4	protein-coding
141600	chr2	241639221	241639900	+	0	NA	intron (NM_013325, intron 1 of 12)	LTR28C|LTR|ERV1	1867	NM_013325	23192		NM_013325	ENSG00000168397	ATG4B	APG4B|AUTL1|HsAPG4B	autophagy related 4B cysteine peptidase	protein-coding
160482	chr3	30610801	30611200	+	0	NA	intron (NM_003242, intron 1 of 6)	L2c|LINE|L2	4399	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
144080	chr20	33717671	33717830	+	0	NA	intron (NM_183397, intron 1 of 2)	intron (NM_183397, intron 1 of 2)	2560	NM_007238	11264		NM_007238	ENSG00000101417	PXMP4	PMP24	peroxisomal membrane protein 4	protein-coding
107190	chr18	35624021	35624280	+	0	NA	intron (NM_001384444, intron 1 of 11)	L1ME3Cz|LINE|L1	32413	NR_039771	100616257		NR_039771	ENSG00000283514	MIR3975	-	microRNA 3975	ncRNA
67809	chr14	73776571	73776930	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	10458	NM_001043318	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
74630	chr15	60730101	60730300	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	48631	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
207696	chr7	45810201	45810780	+	0	NA	Intergenic	Intergenic	5261	NR_146388	730234		NR_146388		LOC730234	-	uncharacterized LOC730234	ncRNA
151951	chr22	19124371	19124530	+	0	NA	Intergenic	Intergenic	-1996	NM_001173533	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
215817	chr8	6334851	6334950	+	0	NA	Intergenic	Intergenic	71648	NR_040040	100287015		NR_040040	ENSG00000246089	MCPH1-DT	-	MCPH1 divergent transcript	ncRNA
78194	chr15	90569551	90569880	+	0	NA	intron (NM_001042574, intron 2 of 14)	AluJr|SINE|Alu	39792	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
34409	chr10	132395701	132398080	+	0	NA	promoter-TSS (NM_001098637)	promoter-TSS (NM_001098637)	-310	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
23927	chr1	235083301	235084380	+	0	NA	Intergenic	Intergenic	-14022	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
139468	chr2	223958671	223959030	+	0	NA	intron (NM_022915, intron 1 of 3)	Tigger1a_Art|DNA|TcMar-Tigger	1387	NM_022915	65080		NM_022915	ENSG00000135900	MRPL44	COXPD16|L44MT|MRP-L44|mL44	mitochondrial ribosomal protein L44	protein-coding
125441	chr2	12017701	12017900	+	0	NA	intron (NR_110196, intron 2 of 5)	intron (NR_110196, intron 2 of 5)	10684	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
27909	chr10	41895021	41895480	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	472795	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
158637	chr3	4985271	4985700	+	0	NA	TTS (NM_003670)	TTS (NM_003670)	-5524	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
38345	chr11	44568621	44571030	+	0	NA	intron (NM_002231, intron 1 of 9)	MIR|SINE|MIR	4162	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
82912	chr16	21663721	21664400	+	0	NA	promoter-TSS (NM_144672).3	promoter-TSS (NM_144672).3	92	NM_144672	146183		NM_144672	ENSG00000155719	OTOA	CT108|DFNB22	otoancorin	protein-coding
143909	chr20	32590221	32590680	+	0	NA	intron (NR_034152, intron 1 of 2)	AluJo|SINE|Alu	2971	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
30718	chr10	81874021	81874480	+	0	NA	promoter-TSS (NM_001010848)	promoter-TSS (NM_001010848)	-944	NM_001370082	10718		NM_001010848	ENSG00000185737	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding
210415	chr7	100044751	100045000	+	0	NA	exon (NM_001346579, exon 6 of 6)	exon (NM_001346579, exon 6 of 6)	-4899	NM_001362781	7589		NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
69588	chr14	97251601	97251800	+	0	NA	Intergenic	Intergenic	96843	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
49171	chr12	15050671	15051280	+	0	NA	Intergenic	Intergenic	49142	NR_120466	101928340		NR_120466		LINC01489	-	long intergenic non-protein coding RNA 1489	ncRNA
31016	chr10	88800801	88801000	+	0	NA	Intergenic	Intergenic	-1830	NM_001128215	340654		NM_001128215	ENSG00000173239	LIPM	LIPL3|bA304I5.1	lipase family member M	protein-coding
69312	chr14	93179901	93180300	+	0	NA	Intergenic	Intergenic	4797	NM_022151	64112		NM_022151	ENSG00000165943	MOAP1	MAP-1|PNMA4	modulator of apoptosis 1	protein-coding
120521	chr19	44849521	44849980	+	0	NA	intron (NM_002856, intron 1 of 5)	intron (NM_002856, intron 1 of 5)	3453	NM_002856	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
76557	chr15	75213171	75213330	+	0	NA	Intergenic	Intergenic	11368	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
238842	chrX	154466871	154467030	+	0	NA	intron (NM_017514, intron 17 of 32)	intron (NM_017514, intron 17 of 32)	8669	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
46856	chr11	133920771	133921130	+	0	NA	exon (NM_001277285, exon 18 of 20)	exon (NM_001277285, exon 18 of 20)	-22369	NR_039846	100616119		NR_039846	ENSG00000284020	MIR4697	-	microRNA 4697	ncRNA
90961	chr17	2686551	2687300	+	0	NA	Intergenic	Intergenic	5994	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
207668	chr7	45098251	45098550	+	0	NA	Intergenic	AluJb|SINE|Alu	6082	NR_002919	654319		NR_002919	ENSG00000206838	SNORA5A	ACA5|ACA5A/B/C	small nucleolar RNA, H/ACA box 5A	snoRNA
49878	chr12	38903451	38903950	+	0	NA	intron (NM_153634, intron 1 of 19)	intron (NM_153634, intron 1 of 19)	1891	NM_153634	144402		NM_153634	ENSG00000139117	CPNE8	-	copine 8	protein-coding
143659	chr20	31908101	31908300	+	0	NA	intron (NM_001367620, intron 4 of 11)	intron (NM_001367620, intron 4 of 11)	28383	NR_160277	164395		NM_001008409	ENSG00000131044	TTLL9	C20orf125	tubulin tyrosine ligase like 9	protein-coding
210688	chr7	100566771	100566930	+	0	NA	3' UTR (NM_006076, exon 12 of 12)	3' UTR (NM_006076, exon 12 of 12)	7050	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
213993	chr7	142855851	142856300	+	0	NA	intron (NM_004445, intron 1 of 19).2	intron (NM_004445, intron 1 of 19).2	999	NM_004445	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
71385	chr14	105509821	105510530	+	0	NA	Intergenic	AluJb|SINE|Alu	-16408	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
174044	chr4	26876601	26876800	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	15859	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
113143	chr19	8333321	8333980	+	0	NA	intron (NM_198471, intron 6 of 10)	CpG	9612	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
151739	chr22	17778521	17778850	+	0	NA	non-coding (NR_103718, exon 1 of 1)	non-coding (NR_103718, exon 1 of 1)	1395	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
180187	chr5	1485551	1485650	+	0	NA	intron (NM_024830, intron 5 of 13)	intron (NM_024830, intron 5 of 13)	25256	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
223791	chr8	144700371	144700730	+	0	NA	Intergenic	CpG	-14704	NM_001308208	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
18724	chr1	167463071	167463250	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	55369	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
162670	chr3	48924371	48924530	+	0	NA	intron (NM_001349212, intron 2 of 14)	AluJr|SINE|Alu	-5065	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
105216	chr17	82334201	82334400	+	0	NA	promoter-TSS (NM_003004)	promoter-TSS (NM_003004)	-534	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
88779	chr16	87297901	87298200	+	0	NA	Intergenic	Intergenic	-5598	NR_104667	101928682		NR_104667	ENSG00000261697	LOC101928682	-	uncharacterized LOC101928682	ncRNA
186368	chr5	134901971	134902800	+	0	NA	TTS (NM_001350735)	TTS (NM_001350735)	-2746	NM_032151	84105		NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
209765	chr7	87218021	87218350	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	1547	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
6652	chr1	28983571	28983950	+	0	NA	intron (NM_001376013, intron 1 of 20)	LTR1D|LTR|ERV1	69184	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
8979	chr1	44637651	44637950	+	0	NA	intron (NM_001319957, intron 7 of 13)	intron (NM_001319957, intron 7 of 13)	5832	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
192779	chr6	26532751	26533650	+	0	NA	Intergenic	Intergenic	-5166	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
98540	chr17	47659851	47661080	+	0	NA	intron (NM_002265, intron 5 of 21)	L1MB2|LINE|L1	9400	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
17051	chr1	156090501	156091230	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	8292	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
104172	chr17	80416651	80417630	+	0	NA	intron (NR_148042, intron 2 of 7)	intron (NR_148042, intron 2 of 7)	-1972	NR_029376	100294362		NR_029376	ENSG00000263069	RNF213-AS1	-	RNF213 antisense RNA 1	ncRNA
22873	chr1	225779151	225779550	+	0	NA	intron (NM_001130440, intron 1 of 3)	AluSg4|SINE|Alu	1524	NM_003133	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
175856	chr4	78951851	78952430	+	0	NA	Intergenic	Intergenic	-12702	NM_001350106	152559		NM_177453	ENSG00000163291	PAQR3	RKTG	progestin and adipoQ receptor family member 3	protein-coding
223460	chr8	143995421	143995880	+	0	NA	Intergenic	MER90a|LTR|ERV1	5592	NM_000837	2907		NM_000837	ENSG00000178719	GRINA	HNRGW|LFG1|NMDARA1|TMBIM3	glutamate ionotropic receptor NMDA type subunit associated protein 1	protein-coding
86193	chr16	57986901	57987980	+	0	NA	3' UTR (NM_199046, exon 8 of 8)	3' UTR (NM_199046, exon 8 of 8)	10896	NM_199046	374739		NM_199046	ENSG00000159648	SPMIP8	TEPP	sperm microtubule inner protein 8	protein-coding
94061	chr17	27453001	27453280	+	0	NA	Intergenic	L2a|LINE|L2	-3308	NM_001367810	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
199302	chr6	112035351	112035700	+	0	NA	Intergenic	Intergenic	-18579	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
99004	chr17	48754771	48755250	+	0	NA	Intergenic	CpG	-26260	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
80730	chr16	3115671	3116030	+	0	NA	promoter-TSS (NR_024167)	promoter-TSS (NR_024167)	-252	NR_024166	81854		NM_030970		ZNF205-AS1	-	ZNF205 antisense RNA 1	ncRNA
8347	chr1	40217271	40217430	+	0	NA	intron (NM_012421, intron 5 of 7)	AluJr|SINE|Alu	-30587	NM_001008740	127391		NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
88119	chr16	81576501	81577470	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-34363	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
140036	chr2	231189871	231190430	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-8481	NM_001352759	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
84578	chr16	30633801	30634900	+	0	NA	Intergenic	Intergenic	-16428	NM_001320464	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
31228	chr10	91801571	91801930	+	0	NA	intron (NM_025235, intron 1 of 26)	AluSg|SINE|Alu	3324	NM_025235	80351		NM_025235	ENSG00000107854	TNKS2	ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6	tankyrase 2	protein-coding
161524	chr3	42603001	42603580	+	0	NA	intron (NM_001349126, intron 2 of 18)	AluJo|SINE|Alu	-2212	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
157139	chr22	42825701	42826300	+	0	NA	intron (NM_001142293, intron 6 of 14)	intron (NM_001142293, intron 6 of 14)	31273	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
71418	chr14	105567371	105567950	+	0	NA	Intergenic	Intergenic	35805	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
63745	chr14	21228051	21228530	+	0	NA	intron (NM_001077443, intron 4 of 7)	MER85|DNA|PiggyBac	-21390	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
26881	chr10	25875751	25875850	+	0	NA	Intergenic	Intergenic	57910	NR_120650	101929073		NR_120650	ENSG00000226304	LOC101929073	-	uncharacterized LOC101929073	ncRNA
134391	chr2	136384271	136385030	+	0	NA	Intergenic	Intergenic	-266501	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
98031	chr17	45411421	45412150	+	0	NA	intron (NR_169601, intron 4 of 20)	intron (NR_169601, intron 4 of 20)	-1399	NM_001385399	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
168070	chr3	138068371	138068800	+	0	NA	TTS (NM_001170538)	TTS (NM_001170538)	44895	NM_001170538	199221		NM_173543	ENSG00000158163	DZIP1L	DZIP2|PKD5	DAZ interacting zinc finger protein 1 like	protein-coding
135830	chr2	170649671	170649830	+	0	NA	intron (NR_045683, intron 33 of 35)	AluSz|SINE|Alu	64817	NR_027433	440925		NM_001013712	ENSG00000222033	LINC01124	-	long intergenic non-protein coding RNA 1124	ncRNA
116785	chr19	18514301	18514500	+	0	NA	intron (NM_006532, intron 1 of 11)	AluY|SINE|Alu	7670	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
217920	chr8	38029671	38031650	+	0	NA	exon (NM_004095, exon 1 of 3)	exon (NM_004095, exon 1 of 3)	126	NM_004095	1978		NM_004095	ENSG00000187840	EIF4EBP1	4E-BP1|4EBP1|BP-1|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding
25057	chr10	3787851	3788850	+	0	NA	Intergenic	Intergenic	-3069	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
200891	chr6	138989501	138989780	+	0	NA	Intergenic	Intergenic	-1379	NM_001128617	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
179969	chr5	847971	848530	+	0	NA	intron (NM_024786, intron 2 of 12)	intron (NM_024786, intron 2 of 12)	2736	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
185072	chr5	116359051	116359350	+	0	NA	Intergenic	MIRb|SINE|MIR	15370	NR_104675	101927190		NR_104675		LOC101927190	-	uncharacterized LOC101927190	ncRNA
82842	chr16	21508671	21508900	+	0	NA	Intergenic	Intergenic	-2650	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
6430	chr1	28172551	28173850	+	0	NA	intron (NM_001164723, intron 1 of 2)	AluJr|SINE|Alu	3490	NM_000952	5724		NM_000952	ENSG00000169403	PTAFR	PAFR	platelet activating factor receptor	protein-coding
12453	chr1	107795551	107795650	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-101623	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
138168	chr2	202635601	202636650	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	1156	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
146668	chr20	50503901	50504400	+	0	NA	Intergenic	L2a|LINE|L2	-6171	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
26188	chr10	14542101	14542400	+	0	NA	intron (NM_031453, intron 2 of 4)	AluSz|SINE|Alu	-3708	NM_001320740	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
202430	chr6	157962571	157962930	+	0	NA	Intergenic	Intergenic	-19113	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
226936	chr9	79613221	79613480	+	0	NA	intron (NM_001351563, intron 5 of 17)	intron (NM_001351563, intron 5 of 17)	40173	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
2912	chr1	11690421	11690680	+	0	NA	intron (NM_001127325, intron 1 of 8)	MIRb|SINE|MIR	1071	NM_001127325	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
77607	chr15	85328701	85328900	+	0	NA	Intergenic	Intergenic	-51796	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
109036	chr18	79737521	79737780	+	0	NA	intron (NM_004715, intron 12 of 12)	intron (NM_004715, intron 12 of 12)	56220	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
76932	chr15	78063951	78064330	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	13512	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
49711	chr12	31163471	31163630	+	0	NA	intron (NR_153414, intron 14 of 44)	L1PA3|LINE|L1	37685	NR_153414	144203		NM_173498	ENSG00000177359	OVOS2	-	alpha-2-macroglobulin like 1 pseudogene	pseudo
160726	chr3	32437771	32438330	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	46197	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
30178	chr10	74234521	74234830	+	0	NA	intron (NM_001369123, intron 3 of 9)	intron (NM_001369123, intron 3 of 9)	57912	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
26723	chr10	22674721	22675100	+	0	NA	intron (NM_005028, intron 1 of 9)	AluJo|SINE|Alu	39198	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
176984	chr4	105060701	105060900	+	0	NA	Intergenic	Intergenic	-85075	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
219810	chr8	81504071	81504230	+	0	NA	Intergenic	Intergenic	-20917	NM_001442	2167		NM_001442	ENSG00000170323	FABP4	A-FABP|AFABP|ALBP|HEL-S-104|aP2	fatty acid binding protein 4	protein-coding
73629	chr15	44636701	44636900	+	0	NA	intron (NM_025137, intron 7 of 39)	AluSz|SINE|Alu	26862	NM_001160227	80208		NM_025137	ENSG00000104133	SPG11	ALS5|CMT2X|KIAA1840	SPG11 vesicle trafficking associated, spatacsin	protein-coding
182267	chr5	57202551	57202650	+	0	NA	intron (NM_001331037, intron 2 of 12)	intron (NM_001331037, intron 2 of 12)	-11474	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
183359	chr5	77088151	77088250	+	0	NA	promoter-TSS (NM_001329564)	promoter-TSS (NM_001329564)	-915	NM_032367	84327		NM_032367	ENSG00000132846	ZBED3	-	zinc finger BED-type containing 3	protein-coding
152037	chr22	19478371	19480400	+	0	NA	promoter-TSS (NM_003504)	promoter-TSS (NM_003504)	-81	NM_001369291	8318		NM_003504	ENSG00000093009	CDC45	CDC45L|CDC45L2|MGORS7|PORC-PI-1	cell division cycle 45	protein-coding
11907	chr1	93349321	93350230	+	0	NA	intron (NM_001938, intron 1 of 2)	MER5C|DNA|hAT-Charlie	3868	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
30871	chr10	86754501	86755030	+	0	NA	Intergenic	AluY|SINE|Alu	-1854	NM_004329	657		NM_004329	ENSG00000107779	BMPR1A	10q23del|ACVRLK3|ALK-3|ALK3|BMPR-1A|CD292|SKR5	bone morphogenetic protein receptor type 1A	protein-coding
51375	chr12	51849301	51849500	+	0	NA	promoter-TSS (NM_001384995)	promoter-TSS (NM_001384995)	-682	NM_001384995	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
174826	chr4	48269231	48271150	+	0	NA	promoter-TSS (NM_003215)	promoter-TSS (NM_003215)	-352	NM_003215	7006		NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
113675	chr19	10394171	10394330	+	0	NA	intron (NM_007065, intron 5 of 7)	AluSz6|SINE|Alu	9288	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
215305	chr7	157319871	157320230	+	0	NA	Intergenic	Intergenic	-16954	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
191077	chr6	3511471	3511630	+	0	NA	Intergenic	Intergenic	-54500	NM_001382317	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
62600	chr13	100235301	100235750	+	0	NA	intron (NM_001352611, intron 7 of 21)	intron (NM_001352611, intron 7 of 21)	146432	NR_148027	5095		NM_000282	ENSG00000175198	PCCA	-	propionyl-CoA carboxylase subunit alpha	protein-coding
4278	chr1	19687821	19689080	+	0	NA	intron (NM_001349112, intron 14 of 14)	intron (NM_001349112, intron 14 of 14)	23575	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
51423	chr12	52018371	52018530	+	0	NA	Intergenic	L2a|LINE|L2	-4382	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
173973	chr4	26088471	26088830	+	0	NA	Intergenic	Intergenic	-74808	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
184563	chr5	102772251	102772580	+	0	NA	intron (NM_001364588, intron 1 of 24)	intron (NM_001364588, intron 1 of 24)	17110	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
81063	chr16	4329401	4329630	+	0	NA	intron (NM_001318918, intron 2 of 7).2	intron (NM_001318918, intron 2 of 7).2	-1175	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
81609	chr16	10619551	10619650	+	0	NA	Intergenic	Intergenic	-39002	NM_001424	2013		NM_001424	ENSG00000213853	EMP2	XMP	epithelial membrane protein 2	protein-coding
85601	chr16	53535971	53536130	+	0	NA	Intergenic	AluJb|SINE|Alu	-32746	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
146940	chr20	52047801	52048230	+	0	NA	Intergenic	Intergenic	57469	NM_001319146	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
183053	chr5	73446771	73448170	+	0	NA	exon (NM_004472, exon 1 of 1)	exon (NM_004472, exon 1 of 1)	1307	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
238946	chrX	154888271	154888430	+	0	NA	promoter-TSS (NR_036049)	promoter-TSS (NR_036049)	-892	NR_036259	100422985		NR_036259	ENSG00000221190	MIR1184-2	-	microRNA 1184-2	ncRNA
181300	chr5	40205001	40205800	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	153109	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
119834	chr19	41363431	41364830	+	0	NA	promoter-TSS (NM_030578)	promoter-TSS (NM_030578)	19	NM_030578	80776		NM_030578	ENSG00000123810	B9D2	ICIS-1|JBTS34|MKS10|MKSR-2|MKSR2	B9 domain containing 2	protein-coding
144493	chr20	35658351	35658450	+	0	NA	intron (NM_001198840, intron 1 of 1)	intron (NM_001198840, intron 1 of 1)	-4491	NM_003915	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
154763	chr22	36514351	36514650	+	0	NA	intron (NR_156418, intron 12 of 14)	MLT1E2|LTR|ERVL-MaLR	-7460	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
145095	chr20	38724201	38724700	+	0	NA	promoter-TSS (NM_080552)	promoter-TSS (NM_080552)	-36	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
9184	chr1	45601151	45601250	+	0	NA	intron (NM_001195193, intron 2 of 12)	L1ME1|LINE|L1	17159	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
78660	chr15	94324021	94324530	+	0	NA	intron (NM_001385002, intron 5 of 23)	intron (NM_001385002, intron 5 of 23)	-31655	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
97414	chr17	43400321	43400580	+	0	NA	3' UTR (NM_001661, exon 2 of 2)	3' UTR (NM_001661, exon 2 of 2)	1457	NM_001661	379		NM_001661	ENSG00000175906	ARL4D	ARF4L	ADP ribosylation factor like GTPase 4D	protein-coding
53826	chr12	69333871	69334550	+	0	NA	Intergenic	L1MC3|LINE|L1	-14171	NM_000239	4069		NM_000239	ENSG00000090382	LYZ	LYZF1|LZM	lysozyme	protein-coding
101461	chr17	67461401	67461600	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-9989	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
23175	chr1	226798251	226799600	+	0	NA	Intergenic	Intergenic	-59750	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
187804	chr5	146446861	146448080	+	0	NA	intron (NM_001382548, intron 1 of 22)	CpG	137	NM_006706	10915		NM_006706	ENSG00000113649	TCERG1	CA150|TAF2S|Urn1	transcription elongation regulator 1	protein-coding
198374	chr6	105461271	105461950	+	0	NA	Intergenic	MIRb|SINE|MIR	-58528	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
141264	chr2	239945071	239945950	+	0	NA	intron (NR_136158, intron 7 of 10)	intron (NR_136158, intron 7 of 10)	-2416	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
101790	chr17	73210021	73210850	+	0	NA	intron (NM_001289410, intron 1 of 1)	intron (NM_001289410, intron 1 of 1)	17282	NM_001289412	84923		NM_032837	ENSG00000133193	VCF1	FAM104A	VCP nuclear cofactor family member 1	protein-coding
64383	chr14	24147101	24148450	+	0	NA	exon (NM_017999, exon 1 of 21)	exon (NM_017999, exon 1 of 21)	277	NM_017999	55072		NM_017999	ENSG00000092098	RNF31	HOIP|IMD115|Paul|ZIBRA	ring finger protein 31	protein-coding
205515	chr7	18296001	18296200	+	0	NA	intron (NM_001321896, intron 1 of 12)	intron (NM_001321896, intron 1 of 12)	6008	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
17763	chr1	159028171	159028330	+	0	NA	intron (NM_001376587, intron 6 of 11)	L1PBa|LINE|L1	18343	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
222873	chr8	142750171	142750530	+	0	NA	exon (NM_205545, exon 3 of 3)	exon (NM_205545, exon 3 of 3)	2182	NM_205545	137797		NM_205545	ENSG00000197353	LYPD2	LYPDC2|UNQ430	LY6/PLAUR domain containing 2	protein-coding
29708	chr10	72070021	72070850	+	0	NA	intron (NM_014767, intron 5 of 11)	intron (NM_014767, intron 5 of 11)	18116	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
214409	chr7	149816521	149816780	+	0	NA	intron (NR_163594, intron 74 of 102)	intron (NR_163594, intron 74 of 102)	-21725	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
94753	chr17	30812451	30813580	+	0	NA	intron (NM_015986, intron 1 of 7)	MLT1H2|LTR|ERVL-MaLR	11677	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
99346	chr17	49860751	49861800	+	0	NA	Intergenic	Intergenic	-13258	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
5896	chr1	26804451	26804550	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	16312	NM_001374482	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
66792	chr14	64708401	64709450	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	4501	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
78695	chr15	96356801	96357580	+	0	NA	Intergenic	CpG	23425	NM_001145157	7026		NM_021005	ENSG00000185551	NR2F2	ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SRXX5|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding
156941	chr22	42323651	42324250	+	0	NA	Intergenic	Intergenic	-40023	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
89522	chr16	89177451	89178000	+	0	NA	intron (NM_004933, intron 1 of 13)	intron (NM_004933, intron 1 of 13)	5977	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
67269	chr14	69150901	69152200	+	0	NA	intron (NM_001284208, intron 1 of 6)	intron (NM_001284208, intron 1 of 6)	1049	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
220040	chr8	91816951	91817050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	200680	NM_175636	862		NM_004349	ENSG00000079102	RUNX1T1	AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	RUNX1 partner transcriptional co-repressor 1	protein-coding
232483	chr9	136247351	136248230	+	0	NA	Intergenic	Intergenic	-1978	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
235814	chrX	49237001	49237480	+	0	NA	exon (NM_014008, exon 2 of 17)	exon (NM_014008, exon 2 of 17)	1770	NM_014008	28952		NM_014008	ENSG00000101997	CCDC22	CXorf37|JM1|RTSC2	coiled-coil domain containing 22	protein-coding
28077	chr10	43350821	43351280	+	0	NA	Intergenic	CpG	-20586	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
154664	chr22	36352351	36352450	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	35567	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
216111	chr8	11246951	11247130	+	0	NA	Intergenic	Intergenic	-37776	NM_015458	66036		NM_015458	ENSG00000104643	MTMR9	C8orf9|LIP-STYX|MTMR8	myotubularin related protein 9	protein-coding
10865	chr1	77981171	77981350	+	0	NA	intron (NM_001317099, intron 1 of 3)	AluSx|SINE|Alu	1076	NM_001317099	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
11336	chr1	89539101	89539300	+	0	NA	intron (NM_001369819, intron 2 of 6)	intron (NM_001369819, intron 2 of 6)	14371	NM_001369819	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
175952	chr4	80989901	80990200	+	0	NA	Intergenic	Intergenic	-40658	NM_001201	651		NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
114138	chr19	11227251	11227680	+	0	NA	exon (NM_001367830, exon 25 of 49)	exon (NM_001367830, exon 25 of 49)	-12154	NM_018687	55908		NM_018687	ENSG00000130173	ANGPTL8	C19orf80|PRO1185|PVPA599|RIFL|TD26	angiopoietin like 8	protein-coding
142211	chr20	3047751	3048050	+	0	NA	3' UTR (NM_030811, exon 4 of 4)	3' UTR (NM_030811, exon 4 of 4)	1848	NM_030811	64949		NM_030811	ENSG00000125901	MRPS26	C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3|mS26	mitochondrial ribosomal protein S26	protein-coding
190144	chr5	178109951	178110250	+	0	NA	Intergenic	AluY|SINE|Alu	-3432	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
103123	chr17	77382271	77383600	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	6852	NM_001113494	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
105883	chr18	3258751	3259050	+	0	NA	intron (NR_130144, intron 1 of 2)	MIRb|SINE|MIR	2918	NR_130143	104968399		NR_130143	ENSG00000264235	MYL12-AS1	-	MYL12A and MYL12B antisense RNA 1	ncRNA
102414	chr17	75624851	75625150	+	0	NA	intron (NM_001309242, intron 58 of 62)	intron (NM_001309242, intron 58 of 62)	-8434	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
167877	chr3	135030651	135030750	+	0	NA	intron (NM_004441, intron 3 of 15)	L1PA3|LINE|L1	235440	NM_004441	2047		NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
112290	chr19	5832971	5833330	+	0	NA	intron (NM_001369502, intron 2 of 3)	L2b|LINE|L2	5642	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
152210	chr22	20128121	20128430	+	0	NA	TTS (NM_001278641)	TTS (NM_001278641)	1873	NR_145765	109617010		NR_145765	ENSG00000264346	SNORA77B	-	small nucleolar RNA, H/ACA box 77B	snoRNA
47149	chr12	760801	761350	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSx1|SINE|Alu	8152	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
108808	chr18	78619871	78620100	+	0	NA	Intergenic	Intergenic	-360290	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
41735	chr11	66670271	66670430	+	0	NA	intron (NM_031492, intron 2 of 3)	intron (NM_031492, intron 2 of 3)	7537	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
10890	chr1	78649501	78650330	+	0	NA	promoter-TSS (NM_006417)	promoter-TSS (NM_006417)	84	NM_006417	10561		NM_006417	ENSG00000137965	IFI44	MTAP44|TLDC5|p44	interferon induced protein 44	protein-coding
1983	chr1	6611301	6611830	+	0	NA	Intergenic	AluSc|SINE|Alu	-2166	NM_153812	148479		NM_153812	ENSG00000116273	PHF13	PHF5|SPOC1	PHD finger protein 13	protein-coding
42703	chr11	72670051	72670430	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	-1176	NM_001146209	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
66981	chr14	66508901	66509980	+	0	NA	intron (NM_020806, intron 1 of 22)	CpG	1293	NM_001377516	10243		NM_020806	ENSG00000171723	GPHN	GEPH|GPH|GPHRYN|HKPX1|MOCODC	gephyrin	protein-coding
238690	chrX	154064221	154064880	+	0	NA	intron (NM_001316337, intron 2 of 4)	intron (NM_001316337, intron 2 of 4)	32419	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
175602	chr4	75726401	75726700	+	0	NA	intron (NM_003715, intron 1 of 23)	FLAM_A|SINE|Alu	1973	NM_003715	8615		NM_003715	ENSG00000138768	USO1	P115|TAP|VDP	USO1 vesicle transport factor	protein-coding
8631	chr1	41685501	41685900	+	0	NA	intron (NM_001127714, intron 1 of 7)	L4_A_Mam|LINE|RTE-X	-201017	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
146696	chr20	50545451	50545550	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	35117	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138196	chr2	202667551	202667850	+	0	NA	intron (NM_173511, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	32731	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
29342	chr10	69428271	69428430	+	0	NA	Intergenic	Intergenic	-11432	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
90986	chr17	2710711	2712750	+	0	NA	promoter-TSS (NR_136412)	promoter-TSS (NR_136412)	34	NM_001366661	23277		NM_015229	ENSG00000132361	CLUH	CLU1	clustered mitochondria homolog	protein-coding
207818	chr7	50314871	50315580	+	0	NA	intron (NM_001291837, intron 1 of 6)	intron (NM_001291837, intron 1 of 6)	-3823	NM_001220768	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
106569	chr18	21735521	21735980	+	0	NA	Intergenic	L1P2|LINE|L1	-5042	NM_020774	57534		NM_020774	ENSG00000101752	MIB1	DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6	MIB E3 ubiquitin protein ligase 1	protein-coding
20791	chr1	201111951	201112250	+	0	NA	intron (NM_000069, intron 1 of 43)	intron (NM_000069, intron 1 of 43)	326	NM_000069	779		NM_000069	ENSG00000081248	CACNA1S	CACNL1A3|CCHL1A3|CMYP18|Cav1.1|DHPRM|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP	calcium voltage-gated channel subunit alpha1 S	protein-coding
236567	chrX	72306301	72306500	+	0	NA	promoter-TSS (NM_001144887)	promoter-TSS (NM_001144887)	470	NM_004143	4435		NM_004143	ENSG00000125931	CITED1	MSG1	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1	protein-coding
217452	chr8	28627071	28627230	+	0	NA	Intergenic	AluY|SINE|Alu	74314	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
81470	chr16	8904051	8904350	+	0	NA	intron (NR_135826, intron 15 of 30)	intron (NR_135826, intron 15 of 30)	32439	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
24082	chr1	235325471	235325930	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-1516	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
115533	chr19	15453321	15453730	+	0	NA	intron (NM_022904, intron 14 of 17)	intron (NM_022904, intron 14 of 17)	-3569	NM_021241	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
47347	chr12	1924901	1925100	+	0	NA	Intergenic	Intergenic	-6348	NM_172364	93589		NM_172364	ENSG00000151062	CACNA2D4	RCD4	calcium voltage-gated channel auxiliary subunit alpha2delta 4	protein-coding
58526	chr12	132211771	132212500	+	0	NA	intron (NM_001122636, intron 6 of 10)	CpG	-6107	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
74510	chr15	60366671	60367080	+	0	NA	intron (NM_001002857, intron 4 of 13)	SVA_E|Retroposon|SVA	31111	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
139885	chr2	230667371	230667530	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	33079	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
70831	chr14	103633371	103633850	+	0	NA	intron (NM_001130107, intron 1 of 15)	L2a|LINE|L2	4422	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
55503	chr12	104956851	104956950	+	0	NA	intron (NM_001352169, intron 1 of 11)	L1MB7|LINE|L1	1390	NM_001352170	84102		NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
219204	chr8	66656421	66656880	+	0	NA	intron (NM_025054, intron 1 of 2)	AluSx|SINE|Alu	10581	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
229251	chr9	116634451	116634550	+	0	NA	intron (NM_001184734, intron 2 of 8)	AluY|SINE|Alu	52715	NM_198186	23245		NM_014010	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding
96202	chr17	39759301	39759780	+	0	NA	3' UTR (NM_001257414, exon 5 of 5)	3' UTR (NM_001257414, exon 5 of 5)	18685	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
106680	chr18	23230771	23232350	+	0	NA	intron (NR_023359, intron 4 of 6)	intron (NR_023359, intron 4 of 6)	75735	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
130093	chr2	74510701	74511600	+	0	NA	Intergenic	AluY|SINE|Alu	-3300	NM_016170	3196		NM_001534	ENSG00000115297	TLX2	HOX11L1|NCX	T cell leukemia homeobox 2	protein-coding
182139	chr5	56226621	56226880	+	0	NA	intron (NM_024669, intron 2 of 11)	L1PA5|LINE|L1	6580	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
36301	chr11	3835301	3835850	+	0	NA	intron (NM_001665, intron 1 of 1)	intron (NM_001665, intron 1 of 1)	5384	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
53051	chr12	57625471	57625830	+	0	NA	non-coding (NR_166678, exon 14 of 14)	non-coding (NR_166678, exon 14 of 14)	-3747	NR_120450	101927583		NR_120450		LOC101927583	-	uncharacterized LOC101927583	ncRNA
206186	chr7	28154821	28155880	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-25107	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
45067	chr11	117060751	117061480	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJr|SINE|Alu	37313	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
129562	chr2	69911771	69912500	+	0	NA	Intergenic	Intergenic	-2906	NM_001202514	4084		NM_002357	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
167371	chr3	128787001	128787520	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	-59548	NR_162138	113219457		NR_162138		MIR12124	-	microRNA 12124	ncRNA
128744	chr2	61993401	61993650	+	0	NA	intron (NM_152516, intron 1 of 2)	MER5B|DNA|hAT-Charlie	87883	NM_152516	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
30003	chr10	73766171	73766780	+	0	NA	exon (NM_004922, exon 13 of 24)	exon (NM_004922, exon 13 of 24)	-5801	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
170273	chr3	184298471	184300230	+	0	NA	exon (NM_002808, exon 1 of 21)	exon (NM_002808, exon 1 of 21)	109	NM_002808	5708		NM_002808	ENSG00000175166	PSMD2	P97|RPN1|S2|TRAP2	proteasome 26S subunit ubiquitin receptor, non-ATPase 2	protein-coding
70138	chr14	100279601	100279800	+	0	NA	3' UTR (NM_003403, exon 5 of 5)	3' UTR (NM_003403, exon 5 of 5)	2343	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
126028	chr2	25344671	25345030	+	0	NA	Intergenic	Intergenic	-2260	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
140584	chr2	233362501	233362940	+	0	NA	intron (NM_152879, intron 1 of 29)	L1MEg|LINE|L1	8226	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
132395	chr2	105785071	105785800	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	40372	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
36972	chr11	11798801	11799230	+	0	NA	Intergenic	Intergenic	-15793	NR_107037	102465870		NR_107037	ENSG00000278529	MIR8070	hsa-mir-8070	microRNA 8070	ncRNA
87684	chr16	74650801	74651250	+	0	NA	intron (NM_001370539, intron 2 of 11)	L1MC5a|LINE|L1	15852	NM_018124	55159		NM_018124	ENSG00000168411	RFWD3	FANCW|RNF201	ring finger and WD repeat domain 3	protein-coding
119007	chr19	38896551	38897050	+	0	NA	intron (NM_001193286, intron 1 of 12)	intron (NM_001193286, intron 1 of 12)	-2645	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
208238	chr7	65430751	65430850	+	0	NA	Intergenic	Intergenic	56945	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
94086	chr17	27595351	27595850	+	0	NA	intron (NM_001367810, intron 8 of 18)	intron (NM_001367810, intron 8 of 18)	-35588	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
20982	chr1	202628921	202629880	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	14053	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
209928	chr7	92559151	92559530	+	0	NA	Intergenic	AluJo|SINE|Alu	30545	NM_001363366	84060		NM_032120	ENSG00000127993	RBM48	C7orf64|HSPC304	RNA binding motif protein 48	protein-coding
18152	chr1	160766821	160767800	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	28063	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
178127	chr4	142038901	142039100	+	0	NA	intron (NM_001385459, intron 18 of 18)	intron (NM_001385459, intron 18 of 18)	266832	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
148716	chr21	6569341	6570980	+	0	NA	Intergenic	Intergenic	8240	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
103770	chr17	78990521	78991180	+	0	NA	TTS (NM_138793)	TTS (NM_138793)	-10927	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
118466	chr19	35887251	35887550	+	0	NA	TTS (NM_001321831)	TTS (NM_001321831)	12337	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
3561	chr1	16157671	16158600	+	0	NA	Intergenic	MIRb|SINE|MIR	-2066	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
69043	chr14	91862101	91862900	+	0	NA	intron (NM_001128596, intron 1 of 11)	intron (NM_001128596, intron 1 of 11)	5036	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
236710	chrX	77900371	77900800	+	0	NA	intron (NM_001866, intron 1 of 2)	intron (NM_001866, intron 1 of 2)	1117	NM_001866	1349		NM_001866	ENSG00000131174	COX7B	APLCC|LSDMCA2	cytochrome c oxidase subunit 7B	protein-coding
79247	chr16	398571	398730	+	0	NA	intron (NM_001286439, intron 2 of 5)	intron (NM_001286439, intron 2 of 5)	908	NM_001286440	4833		NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
220454	chr8	100385921	100386780	+	0	NA	Intergenic	L1PREC2|LINE|L1	3587	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
210401	chr7	99990601	99991270	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-6140	NR_159960	105375423		NR_159959	ENSG00000286923	LOC105375423	-	uncharacterized LOC105375423	ncRNA
239513	chrY	56830871	56831250	+	0	NA	Intergenic	Intergenic	-123195	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
157267	chr22	43992871	43994450	+	0	NA	intron (NM_015380, intron 14 of 14)	intron (NM_015380, intron 14 of 14)	-5551	NM_001003828	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
27403	chr10	31345351	31346050	+	0	NA	intron (NM_001323675, intron 1 of 6)	intron (NM_001323675, intron 1 of 6)	24040	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
19468	chr1	174968071	174968400	+	0	NA	intron (NM_001243764, intron 1 of 6)	intron (NM_001243764, intron 1 of 6)	3457	NM_001243764	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
26206	chr10	14562201	14563000	+	0	NA	intron (NM_001320736, intron 1 of 4)	intron (NM_001320736, intron 1 of 4)	-6420	NM_001320738	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
19100	chr1	171485901	171487280	+	0	NA	intron (NM_015172, intron 1 of 33)	intron (NM_015172, intron 1 of 33)	1060	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
94273	chr17	28704901	28706100	+	0	NA	intron (NM_152465, intron 1 of 3)	intron (NM_152465, intron 1 of 3)	4604	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
187037	chr5	139808371	139808850	+	0	NA	intron (NM_032289, intron 1 of 14)	intron (NM_032289, intron 1 of 14)	12802	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
128643	chr2	61421321	61422000	+	0	NA	intron (NM_014709, intron 1 of 79)	Tigger9a|DNA|TcMar-Tigger	-4283	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
75143	chr15	64600251	64600730	+	0	NA	intron (NM_015042, intron 2 of 9)	AluSx3|SINE|Alu	102791	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
185196	chr5	119389321	119389930	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	33606	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
34903	chr11	393501	394030	+	0	NA	promoter-TSS (NM_007183)	promoter-TSS (NM_007183)	-444	NM_007183	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
129475	chr2	69586321	69586580	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	57288	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
109584	chr19	908721	910750	+	0	NA	intron (NM_138774, intron 1 of 7)	AluSx|SINE|Alu	3484	NM_138774	91300		NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
141786	chr20	62321	62580	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-25222	NM_153325	245938		NM_153325	ENSG00000178591	DEFB125	DEFB-25	defensin beta 125	protein-coding
40572	chr11	64354971	64355780	+	0	NA	exon (NM_032251, exon 25 of 27)	exon (NM_032251, exon 25 of 27)	-3787	NM_001300802	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
193097	chr6	28896101	28896800	+	0	NA	promoter-TSS (NR_104117)	promoter-TSS (NR_104117)	-80	NR_104117	414760		NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14	ncRNA
136734	chr2	181241171	181241530	+	0	NA	intron (NR_130784, intron 2 of 4)	intron (NR_130784, intron 2 of 4)	64302	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
171993	chr4	950251	951000	+	0	NA	intron (NM_032326, intron 4 of 10)	intron (NM_032326, intron 4 of 10)	18165	NM_032326	84286		NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
188830	chr5	159099801	159101030	+	0	NA	promoter-TSS (NM_001324109)	promoter-TSS (NM_001324109)	-68	NR_109890	101927740		NR_109890	ENSG00000245812	LINC02202	-	long intergenic non-protein coding RNA 2202	ncRNA
152804	chr22	21846871	21847030	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	20695	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
228729	chr9	109181221	109181580	+	0	NA	intron (NM_019114, intron 24 of 25)	intron (NM_019114, intron 24 of 25)	-14151	NM_014334	23732		NM_014334	ENSG00000260230	FRRS1L	C9orf4|CG-6|CG6|DEE37|EIEE37	ferric chelate reductase 1 like	protein-coding
5558	chr1	25894951	25896600	+	0	NA	intron (NM_001145454, intron 4 of 4)	MER102b|DNA|hAT-Charlie	10378	NM_203401	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
118498	chr19	35945401	35945600	+	0	NA	3' UTR (NM_024509, exon 3 of 3)	3' UTR (NM_024509, exon 3 of 3)	-1615	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
158418	chr22	50540851	50541180	+	0	NA	Intergenic	Intergenic	-4884	NM_138433	113730		NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
151615	chr22	12175171	12175330	+	0	NA	Intergenic	Intergenic	277844	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
111695	chr19	4276751	4277250	+	0	NA	Intergenic	AluJr|SINE|Alu	-2069	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
138072	chr2	201860551	201860900	+	0	NA	intron (NM_001366386, intron 10 of 13)	intron (NM_001366386, intron 10 of 13)	54146	NM_001261435	65061		NM_139158	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin dependent kinase 15	protein-coding
165832	chr3	105838851	105839300	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	28516	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
60882	chr13	46125401	46125850	+	0	NA	TTS (NM_002298)	TTS (NM_002298)	-20549	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
151488	chr21	46296301	46296730	+	0	NA	intron (NM_001314024, intron 3 of 3)	intron (NM_001314024, intron 3 of 3)	10173	NM_001314022	54059		NM_058181	ENSG00000182362	YBEY	C21orf57	ybeY metalloendoribonuclease	protein-coding
169755	chr3	172538371	172538530	+	0	NA	Intergenic	LTR8|LTR|ERV1	-15020	NM_003810	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
32244	chr10	101839251	101840300	+	0	NA	promoter-TSS (NM_173194)	promoter-TSS (NM_173194)	96	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
235200	chrX	41346401	41346600	+	0	NA	intron (NM_001193417, intron 12 of 15)	intron (NM_001193417, intron 12 of 15)	12334	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
178292	chr4	145115071	145115430	+	0	NA	intron (NM_002940, intron 9 of 17)	intron (NM_002940, intron 9 of 17)	-16709	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
158685	chr3	5191371	5191530	+	0	NA	intron (NM_014674, intron 1 of 11)	AluJr|SINE|Alu	3743	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
134436	chr2	143140951	143141580	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	11846	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
3008	chr1	12065821	12066650	+	0	NA	intron (NM_001281430, intron 1 of 13)	intron (NM_001281430, intron 1 of 13)	2858	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
185168	chr5	119346371	119347080	+	0	NA	intron (NM_001286814, intron 1 of 1)	MER119|DNA|hAT-Charlie	-8048	NM_001286813	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
15172	chr1	149075651	149076250	+	0	NA	intron (NM_001277444, intron 6 of 24)	intron (NM_001277444, intron 6 of 24)	6361	NM_001277444	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
56967	chr12	120536151	120537180	+	0	NA	intron (NM_001330474, intron 1 of 16)	intron (NM_001330474, intron 1 of 16)	2309	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
175420	chr4	70994801	70995300	+	0	NA	intron (NM_000788, intron 1 of 6)	intron (NM_000788, intron 1 of 6)	1401	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
2607	chr1	9996651	9998300	+	0	NA	intron (NM_052960, intron 1 of 3)	CpG	247	NR_138250	116362		NM_052960	ENSG00000162444	RBP7	CRABP4|CRBP4|CRBPIV	retinol binding protein 7	protein-coding
204899	chr7	6101871	6102030	+	0	NA	Intergenic	AluSz|SINE|Alu	-2999	NM_032172	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
221627	chr8	125729961	125730650	+	0	NA	Intergenic	Intergenic	220892	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
134897	chr2	149160801	149161480	+	0	NA	intron (NM_001317002, intron 4 of 7)	intron (NM_001317002, intron 4 of 7)	42966	NM_001317002	130576		NM_177964	ENSG00000150556	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
42226	chr11	68046951	68047750	+	0	NA	intron (NM_001351059, intron 9 of 18)	intron (NM_001351059, intron 9 of 18)	2556	NR_106811	102465451		NR_106811	ENSG00000275022	MIR6753	hsa-mir-6753	microRNA 6753	ncRNA
191226	chr6	5724101	5724500	+	0	NA	intron (NM_001374875, intron 6 of 6)	intron (NM_001374875, intron 6 of 6)	-29028	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
30669	chr10	80493401	80494480	+	0	NA	intron (NM_001128309, intron 2 of 5)	intron (NM_001128309, intron 2 of 5)	25699	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
215667	chr8	666521	666850	+	0	NA	intron (NM_207332, intron 5 of 5)	intron (NM_207332, intron 5 of 5)	64539	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
187210	chr5	140690771	140691800	+	0	NA	promoter-TSS (NM_001278732)	promoter-TSS (NM_001278732)	85	NM_002109	3035		NM_002109	ENSG00000170445	HARS1	CMT2W|HARS|HRS|USH3B	histidyl-tRNA synthetase 1	protein-coding
125559	chr2	15939851	15940700	+	0	NA	promoter-TSS (NM_001293233)	promoter-TSS (NM_001293233)	-275	NM_001293228	4613		NM_005378	ENSG00000134323	MYCN	FGLDS1|MODED|MPAPA|MYCNsORF|MYCNsPEP|N-myc|NMYC|ODED|bHLHe37	MYCN proto-oncogene, bHLH transcription factor	protein-coding
167658	chr3	129824901	129825200	+	0	NA	intron (NM_001349271, intron 2 of 4)	intron (NM_001349271, intron 2 of 4)	-30438	NM_001349273	23023		NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
136633	chr2	179107771	179108230	+	0	NA	3' UTR (NM_178123, exon 18 of 18)	3' UTR (NM_178123, exon 18 of 18)	-57863	NM_173648	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
71850	chr15	22239071	22239630	+	0	NA	Intergenic	Intergenic	-14021	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
148133	chr20	63473251	63473580	+	0	NA	promoter-TSS (NM_004518)	promoter-TSS (NM_004518)	-760	NM_172108	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
93910	chr17	21277851	21278950	+	0	NA	Intergenic	Intergenic	-6311	NM_145109	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
180135	chr5	1328751	1329050	+	0	NA	intron (NM_030782, intron 9 of 16)	intron (NM_030782, intron 9 of 16)	16199	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
2748	chr1	10677571	10677730	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	118996	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
227171	chr9	87271871	87272280	+	0	NA	Intergenic	Intergenic	123431	NR_161226	401535		NR_161226	ENSG00000204446	LINC02872	C9orf170	long intergenic non-protein coding RNA 2872	ncRNA
170540	chr3	186772221	186773250	+	0	NA	Intergenic	Intergenic	-10842	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
235081	chrX	40179051	40179350	+	0	NA	Intergenic	Intergenic	-1871	NM_001123383	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
144215	chr20	34362301	34363950	+	0	NA	promoter-TSS (NM_001257138)	promoter-TSS (NM_001257138)	-148	NM_001257138	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
3498	chr1	16032451	16033450	+	0	NA	intron (NM_004070, intron 18 of 19)	intron (NM_004070, intron 18 of 19)	-10832	NM_000085	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
238979	chrX	155568271	155568450	+	0	NA	intron (NM_018196, intron 1 of 7)	L1PA3|LINE|L1	-44205	NM_001304990	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
108977	chr18	79643851	79644350	+	0	NA	intron (NR_136643, intron 2 of 4)	intron (NR_136643, intron 2 of 4)	35645	NR_136643	284241		NM_182570	ENSG00000178412	CTDP1-DT	-	CTDP1 divergent transcript	ncRNA
101338	chr17	66807501	66807700	+	0	NA	3' UTR (NM_002737, exon 17 of 17)	3' UTR (NM_002737, exon 17 of 17)	20528	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
88317	chr16	84266451	84266700	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-26825	NM_172347	93107		NM_133490	ENSG00000168418	KCNG4	KV6.3|KV6.4	potassium voltage-gated channel modifier subfamily G member 4	protein-coding
200397	chr6	134373551	134373650	+	0	NA	Intergenic	Intergenic	-55542	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
130399	chr2	85322771	85322930	+	0	NA	intron (NM_001206840, intron 3 of 3)	intron (NM_001206840, intron 3 of 3)	5139	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
167908	chr3	136161671	136161930	+	0	NA	intron (NM_018133, intron 1 of 1)	intron (NM_018133, intron 1 of 1)	32668	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
62479	chr13	99386001	99386550	+	0	NA	non-coding (NR_026644, exon 9 of 9)	non-coding (NR_026644, exon 9 of 9)	30144	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
44499	chr11	106023851	106024400	+	0	NA	Intergenic	Intergenic	-1838	NM_001318749	84437		NM_032424	ENSG00000170903	MSANTD4	KIAA1826	Myb/SANT DNA binding domain containing 4 with coiled-coils	protein-coding
16780	chr1	155513351	155514150	+	0	NA	intron (NM_018489, intron 2 of 27)	L1M3|LINE|L1	-48292	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
58214	chr12	127162801	127163500	+	0	NA	Intergenic	Intergenic	-102753	NR_104646	101927592		NR_104646	ENSG00000249345	LINC02405	-	long intergenic non-protein coding RNA 2405	ncRNA
127695	chr2	43215751	43216130	+	0	NA	Intergenic	MIRb|SINE|MIR	10666	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
142354	chr20	3764171	3764330	+	0	NA	intron (NR_047675, intron 1 of 5)	intron (NR_047675, intron 1 of 5)	3503	NM_001258430	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
193373	chr6	30333801	30334230	+	0	NA	intron (NM_001369523, intron 5 of 8).5	intron (NM_001369523, intron 5 of 8).5	4704	NM_001199119	202658		NM_001199119	ENSG00000248167	TRIM39-RPP21	TRIM39R	TRIM39-RPP21 readthrough	protein-coding
3131	chr1	12438301	12439350	+	0	NA	intron (NM_018156, intron 64 of 68)	intron (NM_018156, intron 64 of 68)	-68421	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
115112	chr19	14351801	14352000	+	0	NA	intron (NR_134908, intron 1 of 3)	AluY|SINE|Alu	12090	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
40776	chr11	64872851	64876700	+	0	NA	intron (NM_001282444, intron 3 of 6)	intron (NM_001282444, intron 3 of 6)	3834	NR_162101	113218486		NR_162101		MIR10392	-	microRNA 10392	ncRNA
178038	chr4	139559371	139559980	+	0	NA	Intergenic	Intergenic	-2906	NM_001306199	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
155192	chr22	37809021	37809480	+	0	NA	intron (NM_014291, intron 1 of 8)	MIR3|SINE|MIR	1316	NM_014291	23464		NM_014291	ENSG00000100116	GCAT	KBL	glycine C-acetyltransferase	protein-coding
233790	chrX	1442751	1443200	+	0	NA	intron (NM_001173473, intron 1 of 12).2	LTR19A|LTR|ERV1	9934	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
50907	chr12	49292801	49293430	+	0	NA	non-coding (NR_120449, exon 8 of 8)	non-coding (NR_120449, exon 8 of 8)	-2032	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
41078	chr11	65511971	65512580	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4843	NR_145459	109136579		NR_145459	ENSG00000289740	TALAM1	-	TALAM1 transcript, MALAT1 antisense RNA	ncRNA
89203	chr16	88605201	88605600	+	0	NA	intron (NM_144604, intron 6 of 17)	intron (NM_144604, intron 6 of 17)	-33172	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
114276	chr19	11581301	11582050	+	0	NA	Intergenic	AluSz|SINE|Alu	-2700	NM_001111035	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
10375	chr1	64960201	64961380	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	5759	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
187128	chr5	140427151	140427750	+	0	NA	intron (NM_020690, intron 1 of 35)	SVA_D|Retroposon|SVA	25617	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
233461	chr9	137671751	137672050	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	52895	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
143962	chr20	32830371	32830930	+	0	NA	intron (NM_012325, intron 2 of 6)	intron (NM_012325, intron 2 of 6)	10696	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
165711	chr3	102224201	102224400	+	0	NA	Intergenic	Intergenic	60595	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
85107	chr16	33965611	33966030	+	0	NA	Intergenic	Intergenic	196443	NR_130772	104644205		NR_130771		ENPP7P13	DUNQU1	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13	pseudo
188054	chr5	149990671	149991530	+	0	NA	Intergenic	Intergenic	9554	NM_001243253	81789		NM_030953	ENSG00000164296	TIGD6	-	tigger transposable element derived 6	protein-coding
39816	chr11	62027021	62027480	+	0	NA	Intergenic	MER51E|LTR|ERV1	-59616	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
79589	chr16	1025271	1025640	+	0	NA	Intergenic	Intergenic	43685	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
232158	chr9	134115721	134115980	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-19349	NM_001384414	11091		NM_017588	ENSG00000196363	WDR5	BIG-3|BIG3|CFAP89|SWD3	WD repeat domain 5	protein-coding
184914	chr5	112915951	112916550	+	0	NA	intron (NM_005669, intron 2 of 4)	intron (NM_005669, intron 2 of 4)	5977	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
196384	chr6	43268271	43268630	+	0	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	24969	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
10423	chr1	65432371	65432530	+	0	NA	3' UTR (NM_017526, exon 4 of 4)	3' UTR (NM_017526, exon 4 of 4)	11734	NM_001198681	54741		NM_017526	ENSG00000213625	LEPROT	LEPR|OB-RGRP|OBRGRP|VPS55	leptin receptor overlapping transcript	protein-coding
125385	chr2	11342621	11342900	+	0	NA	intron (NM_001321643, intron 1 of 32)	intron (NM_001321643, intron 1 of 32)	1876	NM_004850	9475		NM_004850	ENSG00000134318	ROCK2	ROCK-II	Rho associated coiled-coil containing protein kinase 2	protein-coding
155049	chr22	37495571	37495930	+	0	NA	intron (NM_014550, intron 14 of 19)	intron (NM_014550, intron 14 of 19)	-9363	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
199369	chr6	116252121	116252730	+	0	NA	3' UTR (NM_021648, exon 1 of 1)	3' UTR (NM_021648, exon 1 of 1)	1650	NM_021648	23270		NM_021648	ENSG00000187189	TSPYL4	dJ486I3.2	TSPY like 4	protein-coding
179587	chr4	185345051	185345350	+	0	NA	intron (NM_001378032, intron 13 of 19)	intron (NM_001378032, intron 13 of 19)	33798	NM_018409	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
226705	chr9	75121871	75122430	+	0	NA	intron (NM_012383, intron 2 of 9)	intron (NM_012383, intron 2 of 9)	33636	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
65210	chr14	49766621	49769400	+	0	NA	promoter-TSS (NM_014315)	promoter-TSS (NM_014315)	-143	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
217627	chr8	30054071	30054430	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	28814	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
239132	chrY	11312051	11312750	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1109190	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
91804	chr17	7037521	7039100	+	0	NA	exon (NM_201566, exon 3 of 4)	exon (NM_201566, exon 3 of 4)	2295	NM_201566	201232		NM_201566	ENSG00000174327	SLC16A13	MCT13	solute carrier family 16 member 13	protein-coding
54007	chr12	75460201	75460400	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-20455	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
177460	chr4	113676471	113676630	+	0	NA	intron (NM_172129, intron 2 of 17)	intron (NM_172129, intron 2 of 17)	85188	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
135440	chr2	161182501	161182900	+	0	NA	intron (NM_133484, intron 2 of 3)	MER21A|LTR|ERVL	22272	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
73091	chr15	40939421	40940100	+	0	NA	TTS (NM_019074)	TTS (NM_019074)	10420	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
177791	chr4	123300251	123300550	+	0	NA	intron (NM_001345856, intron 15 of 15)	intron (NM_001345856, intron 15 of 15)	-96395	NM_001258038	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
231123	chr9	129831651	129831950	+	0	NA	intron (NM_016520, intron 5 of 8)	intron (NM_016520, intron 5 of 8)	3475	NM_016520	51759		NM_016520	ENSG00000136819	C9orf78	CSU2|HCA59|HSPC220|TLS1|bA409K20.3	chromosome 9 open reading frame 78	protein-coding
129798	chr2	71348321	71348630	+	0	NA	5' UTR (NM_001252612, exon 2 of 28)	5' UTR (NM_001252612, exon 2 of 28)	16693	NM_014497	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
200073	chr6	130116371	130116530	+	0	NA	intron (NM_001007102, intron 18 of 21)	MIRb|SINE|MIR	96806	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
44563	chr11	108220001	108220380	+	0	NA	intron (NM_001321307, intron 1 of 17)	intron (NM_001321307, intron 1 of 17)	2448	NM_001321307	4863		NM_002519	ENSG00000149308	NPAT	E14|E14/NPAT|p220	nuclear protein, coactivator of histone transcription	protein-coding
108124	chr18	62329471	62330550	+	0	NA	intron (NM_001270950, intron 1 of 7)	intron (NM_001270950, intron 1 of 7)	4700	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
219429	chr8	71841601	71842550	+	0	NA	3' UTR (NM_005098, exon 2 of 2)	3' UTR (NM_005098, exon 2 of 2)	-1048	NR_033652	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
18911	chr1	168392051	168392600	+	0	NA	Intergenic	L2b|LINE|L2	16801	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
36609	chr11	6746331	6747550	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	22017	NM_001004490	338755		NM_001004490	ENSG00000188124	OR2AG2	OR11-76|OR2AG2P	olfactory receptor family 2 subfamily AG member 2	protein-coding
130520	chr2	85608551	85609050	+	0	NA	3' UTR (NM_001013649, exon 4 of 4)	3' UTR (NM_001013649, exon 4 of 4)	3266	NM_001013649	388969		NM_001013649	ENSG00000168887	C2orf68	HCRCN81	chromosome 2 open reading frame 68	protein-coding
202375	chr6	157818501	157818700	+	0	NA	Intergenic	Intergenic	-4646	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
107058	chr18	32470421	32471680	+	0	NA	promoter-TSS (NM_001242409)	promoter-TSS (NM_001242409)	-168	NM_022751	64762		NM_022751	ENSG00000141441	GAREM1	C18orf11|FAM59A|GAREM|Gm944	GRB2 associated regulator of MAPK1 subtype 1	protein-coding
196230	chr6	42819551	42820150	+	0	NA	intron (NM_001318819, intron 3 of 13)	intron (NM_001318819, intron 3 of 13)	-1206	NM_015349	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
211171	chr7	102586371	102586900	+	0	NA	intron (NM_001079877, intron 17 of 19)	intron (NM_001079877, intron 17 of 19)	-14014	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
202840	chr6	159751721	159751980	+	0	NA	intron (NM_001322817, intron 1 of 7)	AluJb|SINE|Alu	-10195	NM_005891	39		NM_005891	ENSG00000120437	ACAT2	-	acetyl-CoA acetyltransferase 2	protein-coding
126137	chr2	26171301	26171930	+	0	NA	Intergenic	Intergenic	-1473	NM_001168241	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
118775	chr19	38385671	38386350	+	0	NA	exon (NM_152657, exon 3 of 4)	exon (NM_152657, exon 3 of 4)	2024	NM_152657	199720		NM_152657	ENSG00000179168	GGN	-	gametogenetin	protein-coding
90262	chr17	973271	973630	+	0	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	6326	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
166080	chr3	108902221	108902530	+	0	NA	Intergenic	Intergenic	51471	NM_001363884	9626		NM_005459	ENSG00000138472	GUCA1C	GCAP3	guanylate cyclase activator 1C	protein-coding
58722	chr12	132583351	132583880	+	0	NA	exon (NM_001142641, exon 17 of 17)	exon (NM_001142641, exon 17 of 17)	1618	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
30361	chr10	77873421	77874250	+	0	NA	intron (NM_004747, intron 1 of 31).2	intron (NM_004747, intron 1 of 31).2	52920	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
204877	chr7	5971321	5971580	+	0	NA	promoter-TSS (NM_001099697)	promoter-TSS (NM_001099697)	-767	NM_173565	222967		NM_173565	ENSG00000155026	RSPH10B	-	radial spoke head 10 homolog B	protein-coding
134879	chr2	148870251	148870750	+	0	NA	Intergenic	Intergenic	-4727	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
51865	chr12	53482881	53484380	+	0	NA	exon (NM_001193511, exon 9 of 14)	exon (NM_001193511, exon 9 of 14)	15828	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
50336	chr12	47082101	47082650	+	0	NA	intron (NM_138371, intron 1 of 3)	intron (NM_138371, intron 1 of 3)	-2416	NM_001370299	347902		NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
36063	chr11	2953801	2954000	+	0	NA	intron (NM_001369382, intron 13 of 15).2	intron (NM_001369382, intron 13 of 15).2	9993	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
174595	chr4	40256701	40257480	+	0	NA	Intergenic	Intergenic	-50095	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
76430	chr15	74794701	74795430	+	0	NA	intron (NM_001354988, intron 3 of 14)	L2b|LINE|L2	-6308	NR_039738	100616183		NR_039738	ENSG00000264386	MIR4513	-	microRNA 4513	ncRNA
1789	chr1	6108821	6109230	+	0	NA	intron (NM_015557, intron 38 of 41)	intron (NM_015557, intron 38 of 41)	63137	NM_001199863	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
8928	chr1	44012421	44012680	+	0	NA	intron (NM_201649, intron 1 of 13)	L2a|LINE|L2	4613	NM_201649	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
57541	chr12	122160801	122161000	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-6819	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
221452	chr8	124369671	124370030	+	0	NA	intron (NM_194291, intron 1 of 6)	intron (NM_194291, intron 1 of 6)	2849	NM_194291	157378		NM_194291	ENSG00000164983	TMEM65	-	transmembrane protein 65	protein-coding
199063	chr6	111586601	111586900	+	0	NA	intron (NM_147686, intron 2 of 8)	intron (NM_147686, intron 2 of 8)	19128	NM_147686	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
72036	chr15	28531351	28531450	+	0	NA	intron (NM_001350920, intron 1 of 18).5	intron (NM_001350920, intron 1 of 18).5	1571	NM_001350920	100132565		NM_001012452	ENSG00000153684	GOLGA8F	-	golgin A8 family member F	protein-coding
225215	chr9	34171571	34172080	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-7180	NM_001171201	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
82211	chr16	15011701	15012100	+	0	NA	intron (NM_001324019, intron 8 of 22)	AluSx|SINE|Alu	-1503	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
182248	chr5	57179221	57180150	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluSq2|SINE|Alu	4237	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
51890	chr12	53543501	53544150	+	0	NA	intron (NM_001366561, intron 2 of 10)	intron (NM_001366561, intron 2 of 10)	29841	NR_046221	100652999		NR_046221	ENSG00000257550	LOC100652999	-	uncharacterized LOC100652999	ncRNA
129766	chr2	71046771	71047130	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-21346	NM_001330426	55577		NM_017567	ENSG00000124357	NAGK	GNK|HSA242910	N-acetylglucosamine kinase	protein-coding
98945	chr17	48635571	48635900	+	0	NA	Intergenic	Intergenic	-3176	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
200379	chr6	134246551	134246650	+	0	NA	intron (NM_001143676, intron 2 of 13)	AluSx1|SINE|Alu	-68739	NM_001143677	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
110241	chr19	1779751	1780050	+	0	NA	3' UTR (NM_001080488, exon 2 of 2)	3' UTR (NM_001080488, exon 2 of 2)	26394	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
130377	chr2	85301821	85302280	+	0	NA	intron (NM_031283, intron 4 of 11)	AluSx1|SINE|Alu	25939	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
179806	chr5	399851	400150	+	0	NA	intron (NR_165159, intron 6 of 13)	intron (NR_165159, intron 6 of 13)	43160	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
195352	chr6	36636421	36636880	+	0	NA	Intergenic	Intergenic	-14138	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
238997	chrX	156001451	156001950	+	0	NA	intron (NM_176786, intron 2 of 8)	intron (NM_176786, intron 2 of 8)	4004	NM_002186	3581		NM_002186	ENSG00000124334	IL9R	CD129|IL-9R	interleukin 9 receptor	protein-coding
108999	chr18	79698051	79698730	+	0	NA	intron (NM_001318511, intron 4 of 11)	intron (NM_001318511, intron 4 of 11)	16960	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
196017	chr6	42020051	42020750	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	28494	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
119444	chr19	40403901	40404780	+	0	NA	intron (NM_020956, intron 4 of 5)	CpG	9024	NM_020956	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
208149	chr7	64561901	64563550	+	0	NA	intron (NM_178558, intron 1 of 3)	intron (NM_178558, intron 1 of 3)	346	NM_178558	340252		NM_178558	ENSG00000173041	ZNF680	-	zinc finger protein 680	protein-coding
146647	chr20	50376851	50377150	+	0	NA	Intergenic	Intergenic	-55658	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
138147	chr2	202315921	202316380	+	0	NA	Intergenic	Intergenic	23099	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
56749	chr12	120144371	120144530	+	0	NA	intron (NM_006836, intron 41 of 57)	intron (NM_006836, intron 41 of 57)	11049	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
20266	chr1	194055071	194055230	+	0	NA	Intergenic	L1MB7|LINE|L1	750405	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
193079	chr6	28802871	28803030	+	0	NA	Intergenic	Intergenic	60727	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
178974	chr4	162497571	162497930	+	0	NA	Intergenic	Intergenic	-333716	NM_001128428	56884		NM_020116	ENSG00000168843	FSTL5	-	follistatin like 5	protein-coding
148512	chr20	64087371	64087530	+	0	NA	intron (NM_001200019, intron 2 of 5)	CpG	2451	NM_001200019	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
90591	chr17	1576351	1576730	+	0	NA	intron (NM_152346, intron 13 of 13).2	intron (NM_152346, intron 13 of 13).2	-13748	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
77808	chr15	88552251	88552550	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-5697	NR_135740	55070		NM_017996	ENSG00000140543	DET1	-	DET1 partner of COP1 E3 ubiquitin ligase	protein-coding
166201	chr3	111858651	111860000	+	0	NA	promoter-TSS (NM_001134438)	promoter-TSS (NM_001134438)	60	NM_001134438	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
83682	chr16	28405371	28405600	+	0	NA	intron (NM_001199142, intron 1 of 21)	AluSq2|SINE|Alu	-1597	NM_001267574	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
42514	chr11	70371351	70371550	+	0	NA	intron (NM_001378006, intron 25 of 31)	intron (NM_001378006, intron 25 of 31)	-27056	NM_138565	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
181357	chr5	40490571	40490730	+	0	NA	Intergenic	Intergenic	-189265	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
21449	chr1	205483221	205483630	+	0	NA	Intergenic	Intergenic	-21244	NM_002596	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
86228	chr16	58117071	58117430	+	0	NA	intron (NR_136632, intron 1 of 5)	MIRb|SINE|MIR	12131	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
155343	chr22	38229901	38230600	+	0	NA	intron (NM_001195071, intron 5 of 8)	intron (NM_001195071, intron 5 of 8)	-5530	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
25441	chr10	6586171	6586750	+	0	NA	Intergenic	Intergenic	-5814	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
124489	chr19	58565401	58565780	+	0	NA	intron (NM_198055, intron 5 of 5)	AluY|SINE|Alu	6404	NR_027334	100131691		NR_027334	ENSG00000267858	MZF1-AS1	-	MZF1 antisense RNA 1	ncRNA
222091	chr8	130437521	130438250	+	0	NA	intron (NM_001362924, intron 1 of 30)	intron (NM_001362924, intron 1 of 30)	5775	NM_001362924	50807		NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding
208092	chr7	56104701	56104900	+	0	NA	intron (NM_001320327, intron 1 of 3)	AluSq2|SINE|Alu	1676	NM_016139	51142		NM_016139	ENSG00000106153	CHCHD2	C7orf17|MIX17B|MNRR1|NS2TP|PARK22	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding
64344	chr14	24051601	24054150	+	0	NA	intron (NM_138360, intron 1 of 39).2	intron (NM_138360, intron 1 of 39).2	866	NM_138360	90668		NM_138360	ENSG00000186648	CARMIL3	C14orf121|LRRC16B|crml-1	capping protein regulator and myosin 1 linker 3	protein-coding
77101	chr15	78926171	78926550	+	0	NA	intron (NM_001319137, intron 10 of 12)	intron (NM_001319137, intron 10 of 12)	18686	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
155227	chr22	37909651	37910100	+	0	NA	intron (NM_033386, intron 1 of 15)	intron (NM_033386, intron 1 of 15)	3578	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
141582	chr2	241608701	241609130	+	0	NA	intron (NM_015963, intron 2 of 5)	L2a|LINE|L2	8586	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
93635	chr17	19172571	19172930	+	0	NA	Intergenic	MIR|SINE|MIR	-10126	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
93412	chr17	18380951	18382330	+	0	NA	exon (NM_001145127, exon 4 of 11).2	exon (NM_001145127, exon 4 of 11).2	3862	NM_001145127	645027		NM_001145127	ENSG00000214860	EVPLL	-	envoplakin like	protein-coding
87643	chr16	74563801	74564150	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluJr|SINE|Alu	43139	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
120481	chr19	44748101	44749250	+	0	NA	promoter-TSS (NM_005178)	promoter-TSS (NM_005178)	-33	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
126269	chr2	27137901	27138500	+	0	NA	exon (NM_178553, exon 3 of 3)	exon (NM_178553, exon 3 of 3)	1210	NM_178553	339779		NM_178553	ENSG00000186143	PRR30	C2orf53	proline rich 30	protein-coding
152128	chr22	19959471	19959630	+	0	NA	intron (NM_001135162, intron 1 of 5)	(AGCGG)n|Simple_repeat|Simple_repeat	-3003	NM_007310	1312		NM_000754	ENSG00000093010	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
73321	chr15	41926451	41926950	+	0	NA	intron (NR_120332, intron 2 of 3)	L2c|LINE|L2	5283	NR_120332	101928363		NR_120332	ENSG00000259883	EHD4-AS1	-	EHD4 antisense RNA 1	ncRNA
229087	chr9	114367701	114368530	+	0	NA	intron (NM_001317952, intron 4 of 20)	MIRb|SINE|MIR	19867	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
191142	chr6	4139201	4139650	+	0	NA	intron (NR_103764, intron 2 of 3)	intron (NR_103764, intron 2 of 3)	3353	NR_103764	100507506		NR_103764	ENSG00000234817	ECI2-DT	-	ECI2 divergent transcript	ncRNA
69084	chr14	92103521	92103780	+	0	NA	intron (NR_028457, intron 1 of 11)	L2a|LINE|L2	2932	NM_001127696	4287		NM_004993	ENSG00000066427	ATXN3	AT3|ATX3|JOS|MJD|MJD1|SCA3	ataxin 3	protein-coding
55675	chr12	107401051	107401350	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	80612	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
66596	chr14	63542571	63544900	+	0	NA	promoter-TSS (NM_001282180)	promoter-TSS (NM_001282180)	-340	NM_001354926	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
109262	chr19	532501	533480	+	0	NA	intron (NM_004359, intron 1 of 4)	intron (NM_004359, intron 1 of 4)	1230	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
89726	chr16	89424821	89425680	+	0	NA	intron (NR_045839, intron 1 of 9)	MIR|SINE|MIR	-5668	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
209551	chr7	77293051	77293350	+	0	NA	exon (NM_020879, exon 18 of 19)	exon (NM_020879, exon 18 of 19)	-93381	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
119050	chr19	39073271	39074480	+	0	NA	Intergenic	Intergenic	-10493	NM_001363687	390928		NM_001004318	ENSG00000183760	ACP7	PAPL|PAPL1	acid phosphatase 7, tartrate resistant (putative)	protein-coding
156675	chr22	41656701	41657180	+	0	NA	exon (NM_001469, exon 10 of 13)	exon (NM_001469, exon 10 of 13)	31927	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
169114	chr3	155811451	155811750	+	0	NA	Intergenic	L1M4|LINE|L1	-5313	NM_173657	285315		NM_173657	ENSG00000174928	C3orf33	AC3-33	chromosome 3 open reading frame 33	protein-coding
215648	chr8	317071	318030	+	0	NA	Intergenic	Intergenic	65624	NR_103537	157693		NR_103537	ENSG00000182366	FAM87A	-	family with sequence similarity 87 member A	ncRNA
181851	chr5	53095771	53096480	+	0	NA	3' UTR (NM_004531, exon 7 of 7)	3' UTR (NM_004531, exon 7 of 7)	13632	NM_004531	4338		NM_004531	ENSG00000164172	MOCS2	MCBPE|MOCO1|MOCODB|MPTS	molybdenum cofactor synthesis 2	protein-coding
55714	chr12	108214571	108214730	+	0	NA	intron (NM_001304447, intron 5 of 9)	intron (NM_001304447, intron 5 of 9)	82864	NM_001304447	9671		NM_014653	ENSG00000075035	WSCD2	-	WSC domain containing 2	protein-coding
75184	chr15	64767371	64767950	+	0	NA	intron (NM_194272, intron 1 of 7)	intron (NM_194272, intron 1 of 7)	-5145	NR_031674	100302184		NR_031674	ENSG00000221033	MIR1272	MIRN1272|hsa-mir-1272|mir-1272	microRNA 1272	ncRNA
129330	chr2	68741251	68742150	+	0	NA	intron (NM_001364821, intron 1 of 10)	SVA_A|Retroposon|SVA	6323	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
191099	chr6	3869801	3870200	+	0	NA	Intergenic	Intergenic	20627	NM_012135	26240		NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
136082	chr2	173264401	173265080	+	0	NA	intron (NM_016653, intron 19 of 19)	intron (NM_016653, intron 19 of 19)	17296	NR_033882	339751		NR_033882	ENSG00000238133	MAP3K20-AS1	MLK7-AS1	MAP3K20 antisense RNA 1	ncRNA
151153	chr21	44920301	44922430	+	0	NA	promoter-TSS (NM_001303238)	promoter-TSS (NM_001303238)	330	NR_038315	100505746		NR_038311	ENSG00000227039	ITGB2-AS1	-	ITGB2 antisense RNA 1	ncRNA
185147	chr5	119320551	119321030	+	0	NA	intron (NM_001286815, intron 2 of 2)	L2a|LINE|L2	-12385	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
155076	chr22	37557471	37557630	+	0	NA	Intergenic	MIRb|SINE|MIR	-2930	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
61913	chr13	77695051	77696480	+	0	NA	Intergenic	Intergenic	-1922	NM_001242868	122060		NM_144595	ENSG00000139737	SLAIN1	C13orf32	SLAIN motif family member 1	protein-coding
170718	chr3	187995451	187995550	+	0	NA	Intergenic	Intergenic	-19093	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
23416	chr1	228288851	228289800	+	0	NA	intron (NM_052843, intron 38 of 80)	intron (NM_052843, intron 38 of 80)	-75661	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
228538	chr9	101387871	101388380	+	0	NA	3' UTR (NM_019051, exon 2 of 2)	3' UTR (NM_019051, exon 2 of 2)	-3119	NM_001701	570		NM_001701	ENSG00000136881	BAAT	BACAT|BACD1|BAT|HCHO	bile acid-CoA:amino acid N-acyltransferase	protein-coding
233338	chr9	137443801	137444000	+	0	NA	Intergenic	AluSx|SINE|Alu	-2543	NM_001033113	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
212456	chr7	128427021	128427730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17393	NM_183243	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
153785	chr22	29589621	29590830	+	0	NA	Intergenic	Intergenic	-9112	NM_003634	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
204371	chr7	2961651	2961950	+	0	NA	intron (NM_032415, intron 1 of 24)	HAL1|LINE|L1	82067	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
667	chr1	1369251	1369350	+	0	NA	Intergenic	AluY|SINE|Alu	-5759	NM_001282582	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
114249	chr19	11533851	11534400	+	0	NA	Intergenic	AluJr|SINE|Alu	-4726	NM_001308342	1264		NM_001299	ENSG00000130176	CNN1	HEL-S-14|SMCC|Sm-Calp	calponin 1	protein-coding
41103	chr11	65538021	65538300	+	0	NA	TTS (NM_001164266)	TTS (NM_001164266)	13077	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
140262	chr2	232300821	232301280	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-77701	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
24553	chr1	244862241	244863900	+	0	NA	intron (NM_004501, intron 1 of 13)	CpG	1455	NM_004501	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
181965	chr5	55101321	55102100	+	0	NA	promoter-TSS (NM_006144)	promoter-TSS (NM_006144)	-936	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
68710	chr14	90661121	90661380	+	0	NA	intron (NM_001010854, intron 9 of 19)	MLT1J|LTR|ERVL-MaLR	18621	NR_110134	101928909		NR_110134	ENSG00000259163	TTC7B-AS1	-	TTC7B antisense RNA 1	ncRNA
130871	chr2	87406421	87407630	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-48402	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
164818	chr3	70979101	70979300	+	0	NA	intron (NM_001244810, intron 14 of 20)	AluSz|SINE|Alu	85724	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
236989	chrX	101616551	101616650	+	0	NA	exon (NM_001009584, exon 2 of 2)	exon (NM_001009584, exon 2 of 2)	1400	NR_033669	54470		NM_019007	ENSG00000198960	ARMCX6	GASP10	armadillo repeat containing X-linked 6	protein-coding
143134	chr20	23799271	23799430	+	0	NA	Intergenic	Intergenic	27379	NM_001322	1470		NM_001322	ENSG00000170369	CST2	-	cystatin SA	protein-coding
16491	chr1	154760371	154761030	+	0	NA	intron (NM_001204087, intron 3 of 8)	CpG	99176	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
9297	chr1	46449621	46450450	+	0	NA	promoter-TSS (NR_121680)	promoter-TSS (NR_121680)	-331	NR_121680	101929651		NR_121680	ENSG00000224863	LINC01398	-	long intergenic non-protein coding RNA 1398	ncRNA
16805	chr1	155560521	155561080	+	0	NA	intron (NM_018489, intron 1 of 27)	intron (NM_018489, intron 1 of 27)	-1242	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
106987	chr18	32030651	32031230	+	0	NA	intron (NM_017831, intron 1 of 5)	FLAM_A|SINE|Alu	12115	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
3220	chr1	13768771	13769200	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	19570	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
129284	chr2	68440701	68442130	+	0	NA	Intergenic	Intergenic	25879	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
99508	chr17	50205951	50206550	+	0	NA	Intergenic	Intergenic	-4619	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
223629	chr8	144328521	144329530	+	0	NA	Intergenic	Intergenic	-2173	NM_012079	8694		NM_012079	ENSG00000185000	DGAT1	ARAT|ARGP1|DGAT|DIAR7	diacylglycerol O-acyltransferase 1	protein-coding
110823	chr19	2484821	2485500	+	0	NA	Intergenic	AluSx1|SINE|Alu	9033	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
42135	chr11	67634301	67634700	+	0	NA	intron (NM_005995, intron 3 of 7)	intron (NM_005995, intron 3 of 7)	-4563	NM_001243750	254552		NM_181843	ENSG00000167799	NUDT8	-	nudix hydrolase 8	protein-coding
96523	chr17	40340921	40342380	+	0	NA	promoter-TSS (NM_001024809)	promoter-TSS (NM_001024809)	-516	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
52488	chr12	55999421	56000550	+	0	NA	intron (NM_000456, intron 3 of 5)	LTR12C|LTR|ERV1	2709	NM_000456	6821		NM_000456	ENSG00000139531	SUOX	-	sulfite oxidase	protein-coding
123743	chr19	55067301	55067730	+	0	NA	intron (NM_138412, intron 1 of 7).5	L2|LINE|L2	2005	NM_138412	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
215960	chr8	8548401	8548800	+	0	NA	Intergenic	Intergenic	-153337	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
213191	chr7	132489801	132490180	+	0	NA	intron (NM_181775, intron 3 of 4)	intron (NM_181775, intron 3 of 4)	86480	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
221920	chr8	129582071	129582230	+	0	NA	intron (NR_130917, intron 1 of 3)	intron (NR_130917, intron 1 of 3)	-7132	NR_130918	137196		NR_130917	ENSG00000229140	CCDC26	GLM7|RAM	CCDC26 long non-coding RNA	ncRNA
204908	chr7	6153951	6154980	+	0	NA	exon (NM_032172, exon 15 of 18)	exon (NM_032172, exon 15 of 18)	17672	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
20480	chr1	198630951	198631650	+	0	NA	Intergenic	Intergenic	-7668	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
15636	chr1	150683571	150684450	+	0	NA	intron (NM_018178, intron 2 of 4)	MLT1B|LTR|ERVL-MaLR	13144	NM_018178	55204		NM_018178	ENSG00000143457	GOLPH3L	GPP34R	golgi phosphoprotein 3 like	protein-coding
97889	chr17	45109171	45109530	+	0	NA	TTS (NM_021079)	TTS (NM_021079)	5083	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
114027	chr19	10922571	10922800	+	0	NA	3' UTR (NM_001321440, exon 9 of 9)	3' UTR (NM_001321440, exon 9 of 9)	5954	NM_024029	78992		NM_024029	ENSG00000130733	YIPF2	FinGER2|YIPFbeta3B|Yip5C	Yip1 domain family member 2	protein-coding
157248	chr22	43381571	43382130	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-18481	NR_146918	105373054		NR_146918	ENSG00000236117	LINC01639	-	long intergenic non-protein coding RNA 1639	ncRNA
21813	chr1	207308821	207309180	+	0	NA	Intergenic	Intergenic	-12678	NM_001300903	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
13030	chr1	111217151	111217250	+	0	NA	Intergenic	Intergenic	-10459	NM_001025197	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
167899	chr3	136153051	136153930	+	0	NA	intron (NM_018133, intron 1 of 1)	intron (NM_018133, intron 1 of 1)	40978	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
208176	chr7	64699651	64699950	+	0	NA	intron (NM_016220, intron 6 of 6)	AluY|SINE|Alu	20736	NR_106898	102465505		NR_106898	ENSG00000275667	MIR6839	hsa-mir-6839	microRNA 6839	ncRNA
204658	chr7	5430601	5431030	+	0	NA	Intergenic	Intergenic	-1888	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
193046	chr6	28586971	28588050	+	0	NA	promoter-TSS (NM_052923)	promoter-TSS (NM_052923)	-212	NM_052923	114821		NM_052923	ENSG00000232040	SCAND3	Buster4|FAM200D|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
183585	chr5	80183101	80184430	+	0	NA	intron (NM_001174072, intron 2 of 11)	LTR7Y|LTR|ERV1	72283	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
143616	chr20	31722301	31723000	+	0	NA	promoter-TSS (NR_134257)	promoter-TSS (NR_134257)	-150	NM_001322242	598		NM_001191	ENSG00000171552	BCL2L1	BCL-XL/S|BCL2L|BCLX|Bcl-X|PPP1R52	BCL2 like 1	protein-coding
172591	chr4	2479721	2480300	+	0	NA	intron (NM_001185009, intron 2 of 8)	AluJb|SINE|Alu	10557	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
108670	chr18	76826471	76826900	+	0	NA	intron (NM_007345, intron 1 of 30)	AluSx1|SINE|Alu	2925	NM_007345	7776		NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
135054	chr2	156393471	156393830	+	0	NA	Intergenic	MIRb|SINE|MIR	-41902	NM_001083112	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
55222	chr12	101820751	101820850	+	0	NA	intron (NM_024312, intron 1 of 20)	AluSx|SINE|Alu	10159	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
37080	chr11	12716971	12717130	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	42629	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
225493	chr9	35650451	35651530	+	0	NA	promoter-TSS (NM_014450)	promoter-TSS (NM_014450)	-59	NM_014450	27240		NM_014450	ENSG00000137078	SIT1	SIT|SIT-R	signaling threshold regulating transmembrane adaptor 1	protein-coding
40256	chr11	63686471	63686830	+	0	NA	intron (NR_049750, intron 1 of 5)	AluJb|SINE|Alu	5150	NM_201430	10313		NM_006054	ENSG00000133318	RTN3	ASYIP|HAP|NSPL2|NSPLII|RTN3-A1	reticulon 3	protein-coding
85309	chr16	49464851	49465350	+	0	NA	Intergenic	CpG	53485	NR_144553	1596		NR_144553	ENSG00000260089	ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
81301	chr16	4686521	4687100	+	0	NA	3' UTR (NM_001142290, exon 17 of 17)	3' UTR (NM_001142290, exon 17 of 17)	-6883	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
224095	chr9	4491251	4491550	+	0	NA	intron (NM_004170, intron 1 of 11)	CpG	932	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
160522	chr3	30647801	30648830	+	0	NA	intron (NM_001024847, intron 3 of 7)	intron (NM_001024847, intron 3 of 7)	41714	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
200346	chr6	133969451	133970280	+	0	NA	intron (NM_004865, intron 1 of 6)	intron (NM_004865, intron 1 of 6)	16641	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
58655	chr12	132523621	132524480	+	0	NA	intron (NM_001382740, intron 2 of 11)	intron (NM_001382740, intron 2 of 11)	18644	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
81972	chr16	11874601	11874800	+	0	NA	intron (NM_001130007, intron 14 of 14)	intron (NM_001130007, intron 14 of 14)	-23158	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
188440	chr5	154467471	154468150	+	0	NA	Intergenic	Intergenic	10417	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
105259	chr17	82441121	82441650	+	0	NA	intron (NM_001369487, intron 13 of 14)	intron (NM_001369487, intron 13 of 14)	8341	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
32076	chr10	101118271	101118630	+	0	NA	intron (NR_130724, intron 2 of 2)	AluSz6|SINE|Alu	12696	NR_130723	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
123644	chr19	54684471	54684680	+	0	NA	Intergenic	Intergenic	21756	NM_001278428	11006		NM_006847	ENSG00000186818	LILRB4	B4|CD85K|ILT-3|ILT3|LIR-5|LIR5	leukocyte immunoglobulin like receptor B4	protein-coding
235257	chrX	41695471	41695830	+	0	NA	exon (NM_001097579, exon 3 of 3)	exon (NM_001097579, exon 3 of 3)	6677	NM_001097579	2857		NM_005300	ENSG00000171659	GPR34	LPS1|LYPSR1	G protein-coupled receptor 34	protein-coding
197405	chr6	73515201	73516480	+	0	NA	TTS (NM_001402)	TTS (NM_001402)	2598	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
172417	chr4	1829051	1829350	+	0	NA	intron (NM_012318, intron 6 of 13)	SVA_F|Retroposon|SVA	26956	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
48613	chr12	10366101	10366400	+	0	NA	intron (NR_120430, intron 1 of 3)	HERV15-int|LTR|ERV1	2481	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
36470	chr11	6200551	6201300	+	0	NA	TTS (NM_001005178)	TTS (NM_001005178)	1701	NM_001005178	120787		NM_001005178	ENSG00000175485	OR52W1	OR11-71|OR52W1P	olfactory receptor family 52 subfamily W member 1	protein-coding
165442	chr3	98548571	98548730	+	0	NA	Intergenic	Intergenic	16672	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
191393	chr6	7912721	7913050	+	0	NA	intron (NR_037616, intron 4 of 12)	L2a|LINE|L2	-2097	NM_030810	81567		NM_022085	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5	protein-coding
169636	chr3	171313571	171313730	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	146755	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
4118	chr1	19320501	19321180	+	0	NA	intron (NR_109848, intron 3 of 9)	AluSx1|SINE|Alu	8514	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
229314	chr9	120878301	120879950	+	0	NA	intron (NM_001286840, intron 1 of 14)	MIR|SINE|MIR	-1937	NM_015651	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
231770	chr9	132243871	132244630	+	0	NA	3' UTR (NM_032536, exon 8 of 8)	3' UTR (NM_032536, exon 8 of 8)	82192	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
74845	chr15	63514451	63514980	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	10122	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
53447	chr12	65193101	65193630	+	0	NA	intron (NM_001167614, intron 1 of 12)	MER50|LTR|ERV1	23782	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
134846	chr2	148657351	148657700	+	0	NA	intron (NM_015630, intron 1 of 13)	MER5A|DNA|hAT-Charlie	12774	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
32283	chr10	102116571	102116800	+	0	NA	intron (NM_001321612, intron 1 of 10)	intron (NM_001321612, intron 1 of 10)	-1683	NM_003893	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
236548	chrX	72237621	72237880	+	0	NA	intron (NM_017669, intron 1 of 1)	AluJo|SINE|Alu	1277	NM_001009954	54821		NM_017669	ENSG00000186871	ERCC6L	PICH|RAD26L	ERCC excision repair 6 like, spindle assembly checkpoint helicase	protein-coding
113941	chr19	10750771	10751530	+	0	NA	intron (NM_001005362, intron 1 of 19)	intron (NM_001005362, intron 1 of 19)	-29104	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
175819	chr4	77862601	77864030	+	0	NA	intron (NM_020236, intron 1 of 8)	intron (NM_020236, intron 1 of 8)	485	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
214224	chr7	148843071	148843430	+	0	NA	intron (NM_001203248, intron 3 of 19)	AluJb|SINE|Alu	40235	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
15102	chr1	148573951	148575100	+	0	NA	intron (NM_015383, intron 17 of 65)	intron (NM_015383, intron 17 of 65)	21192	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
96625	chr17	40568351	40569050	+	0	NA	Intergenic	L1PA12|LINE|L1	-3228	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
46766	chr11	129851301	129851500	+	0	NA	intron (NM_001331211, intron 2 of 6)	AluSx1|SINE|Alu	35552	NM_138788	120224		NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
180204	chr5	1504801	1505200	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	5856	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
8081	chr1	39029871	39030450	+	0	NA	intron (NM_004552, intron 2 of 2)	AluSx1|SINE|Alu	3810	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
169055	chr3	153220551	153220850	+	0	NA	Intergenic	L2c|LINE|L2	58474	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
92944	chr17	16997521	16998080	+	0	NA	Intergenic	Intergenic	9471	NR_146886	105371562		NR_146886	ENSG00000230969	LINC02090	-	long intergenic non-protein coding RNA 2090	ncRNA
122258	chr19	49036651	49037350	+	0	NA	promoter-TSS (NR_004383)	promoter-TSS (NR_004383)	-20	NR_004383	100126780		NR_004383		SNAR-G1	-	small NF90 (ILF3) associated RNA G1	snRNA
16390	chr1	154409371	154409730	+	0	NA	intron (NM_001206866, intron 1 of 6)	MIRb|SINE|MIR	-2986	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
208568	chr7	72829001	72831200	+	0	NA	intron (NR_024111, intron 1 of 3)	intron (NR_024111, intron 1 of 3)	727	NR_024110	155370		NR_001588	ENSG00000291152	SBDSP1	SBDSP	SBDS pseudogene 1	pseudo
150361	chr21	42199271	42200080	+	0	NA	promoter-TSS (NM_207627)	promoter-TSS (NM_207627)	-14	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
163808	chr3	52416721	52416800	+	0	NA	intron (NM_016483, intron 4 of 10)	AluY|SINE|Alu	6100	NM_001278221	51533		NM_016483	ENSG00000010318	PHF7	HSPC045|HSPC226|NYD-SP6	PHD finger protein 7	protein-coding
138772	chr2	216008871	216009030	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	4601	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
83238	chr16	23858501	23858700	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	22617	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
140360	chr2	232721701	232722350	+	0	NA	intron (NR_103495, intron 3 of 4)	L2c|LINE|L2	-12392	NR_103492	26058		NM_015575	ENSG00000204120	GIGYF2	GYF2|PARK11|PERQ2|PERQ3|TNRC15	GRB10 interacting GYF protein 2	protein-coding
136301	chr2	174782101	174782500	+	0	NA	Intergenic	Intergenic	-17828	NM_000079	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
228029	chr9	95886851	95887230	+	0	NA	intron (NM_001375291, intron 2 of 18)	MLT2A1|LTR|ERVL	-11063	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
105611	chr18	714351	714930	+	0	NA	Intergenic	L1ME2|LINE|L1	-1976	NR_148711	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
168123	chr3	138833051	138833800	+	0	NA	intron (NM_006219, intron 1 of 23)	intron (NM_006219, intron 1 of 23)	1503	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
83989	chr16	29414551	29414850	+	0	NA	Intergenic	Intergenic	-10155	NM_001310137	728888		NM_001310137	ENSG00000254206	NPIPB11	NPIP	nuclear pore complex interacting protein family member B11	protein-coding
136034	chr2	172472401	172473000	+	0	NA	intron (NM_001365530, intron 5 of 25)	intron (NM_001365530, intron 5 of 25)	-6678	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
16365	chr1	154341801	154342240	+	0	NA	intron (NM_001367934, intron 12 of 26)	intron (NM_001367934, intron 12 of 26)	13222	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
157537	chr22	45422571	45422930	+	0	NA	intron (NM_015653, intron 4 of 6)	intron (NM_015653, intron 4 of 6)	9057	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
40502	chr11	64266871	64267030	+	0	NA	intron (NM_001316314, intron 29 of 31)	AluSx1|SINE|Alu	-3581	NM_001378076	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
193797	chr6	31425701	31425900	+	0	NA	Intergenic	L1PA6|LINE|L1	-15867	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
62409	chr13	99290771	99291550	+	0	NA	intron (NR_026644, intron 4 of 8)	MIR|SINE|MIR	16239	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
121223	chr19	46626171	46626600	+	0	NA	Intergenic	Intergenic	-1296	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
160277	chr3	25841051	25841150	+	0	NA	Intergenic	L1MA9|LINE|L1	32595	NR_034055	285326		NR_034055	ENSG00000230891	LINC00692	-	long intergenic non-protein coding RNA 692	ncRNA
58553	chr12	132291321	132291580	+	0	NA	intron (NM_001122636, intron 1 of 10)	intron (NM_001122636, intron 1 of 10)	16059	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
201672	chr6	149509671	149510030	+	0	NA	intron (NM_139126, intron 12 of 12)	MIRb|SINE|MIR	-24836	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
115263	chr19	14539251	14539950	+	0	NA	intron (NM_138501, intron 1 of 12)	L2a|LINE|L2	10006	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
235781	chrX	49099971	49102300	+	0	NA	promoter-TSS (NM_007075)	promoter-TSS (NM_007075)	-14	NM_007075	11152		NM_007075	ENSG00000196998	WDR45	JM5|NBIA4|NBIA5|WDRX1|WIPI-4|WIPI4	WD repeat domain 45	protein-coding
9428	chr1	48383251	48383350	+	0	NA	intron (NM_001286238, intron 9 of 12)	SVA_E|Retroposon|SVA	88904	NM_001286238	54558		NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
145822	chr20	45770951	45771580	+	0	NA	Intergenic	Intergenic	20618	NM_080614	140686		NM_080614	ENSG00000124116	WFDC3	WAP14|dJ447F3.3	WAP four-disulfide core domain 3	protein-coding
117431	chr19	19645201	19646180	+	0	NA	exon (NM_020410, exon 25 of 26)	exon (NM_020410, exon 25 of 26)	-2033	NM_001288999	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
236237	chrX	65725301	65725500	+	0	NA	intron (NM_002444, intron 2 of 12)	(TC)n|Simple_repeat|Simple_repeat	57746	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
106239	chr18	11972771	11972930	+	0	NA	Intergenic	Intergenic	-8657	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
39191	chr11	57466301	57466700	+	0	NA	intron (NM_178570, intron 1 of 2)	intron (NM_178570, intron 1 of 2)	5972	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
121347	chr19	46793121	46793380	+	0	NA	Intergenic	Intergenic	-4656	NM_005628	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
109360	chr19	630321	630900	+	0	NA	intron (NM_005035, intron 2 of 20)	intron (NM_005035, intron 2 of 20)	2927	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
48515	chr12	9943021	9943620	+	0	NA	non-coding (NR_104634, exon 1 of 5)	non-coding (NR_104634, exon 1 of 5)	175	NR_104634	100506159		NR_104634	ENSG00000225231	LINC02470	-	long intergenic non-protein coding RNA 2470	ncRNA
73420	chr15	43101171	43102150	+	0	NA	intron (NM_174916, intron 1 of 46)	AluSz|SINE|Alu	4378	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
143182	chr20	24389671	24390230	+	0	NA	Intergenic	Intergenic	-79249	NM_001323606	79953		NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
129232	chr2	68252101	68254130	+	0	NA	promoter-TSS (NM_000945)	promoter-TSS (NM_000945)	-583	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
39898	chr11	62506171	62506330	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	39414	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
189401	chr5	172759501	172760150	+	0	NA	intron (NR_161233, intron 3 of 3)	L1MEg|LINE|L1	4322	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
102921	chr17	76574121	76574700	+	0	NA	exon (NM_006456, exon 3 of 9)	exon (NM_006456, exon 3 of 9)	11450	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
128922	chr2	64338921	64339300	+	0	NA	Intergenic	Intergenic	-1649	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
33210	chr10	113983171	113983800	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-60381	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
2600	chr1	9909521	9911730	+	0	NA	promoter-TSS (NM_001012329)	promoter-TSS (NM_001012329)	-356	NM_001012329	56998		NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
207291	chr7	43998171	43998530	+	0	NA	intron (NM_001378423, intron 1 of 8)	AluSq2|SINE|Alu	482	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
36902	chr11	10786401	10787030	+	0	NA	Intergenic	AluSx|SINE|Alu	14893	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
216499	chr8	20247351	20247650	+	0	NA	3' UTR (NM_001362884, exon 4 of 4)	3' UTR (NM_001362884, exon 4 of 4)	26035	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
37637	chr11	20609951	20610340	+	0	NA	intron (NM_004211, intron 5 of 15)	intron (NM_004211, intron 5 of 15)	10537	NM_001318369	9152		NM_004211	ENSG00000165970	SLC6A5	GLYT-2|GLYT2|HKPX3|NET1	solute carrier family 6 member 5	protein-coding
87545	chr16	71912171	71912630	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluY|SINE|Alu	16869	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
7376	chr1	32881071	32881230	+	0	NA	Intergenic	Intergenic	-5341	NM_002143	3208		NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
135115	chr2	157411901	157412450	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	-31666	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
12648	chr1	109249171	109250550	+	0	NA	5' UTR (NM_001408, exon 1 of 34)	5' UTR (NM_001408, exon 1 of 34)	321	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
3115	chr1	12314371	12314730	+	0	NA	intron (NM_018156, intron 30 of 68)	intron (NM_018156, intron 30 of 68)	84520	NM_018156	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
126728	chr2	30190751	30190850	+	0	NA	Intergenic	LTR9B|LTR|ERV1	3366	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
30073	chr10	73876371	73877280	+	0	NA	Intergenic	Intergenic	-2234	NM_172171	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
128044	chr2	47520701	47521800	+	0	NA	exon (NM_022055, exon 2 of 2)	exon (NM_022055, exon 2 of 2)	-6287	NR_120602	644093		NR_120602	ENSG00000235760	MSH2-OT1	HCG2040054	MSH2 overlapping transcript 1	ncRNA
85869	chr16	57038921	57039780	+	0	NA	intron (NM_001384955, intron 15 of 47)	intron (NM_001384955, intron 15 of 47)	49793	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
81861	chr16	11639901	11640100	+	0	NA	Intergenic	AluJb|SINE|Alu	-28455	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
36371	chr11	3953651	3953950	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluJb|SINE|Alu	97738	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
42253	chr11	68124721	68125180	+	0	NA	Intergenic	Intergenic	-3562	NM_001376220	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
130793	chr2	86858601	86858800	+	0	NA	intron (NM_172213, intron 1 of 5)	intron (NM_172213, intron 1 of 5)	-3125	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
96272	chr17	39863621	39865430	+	0	NA	promoter-TSS (NM_001257414)	promoter-TSS (NM_001257414)	-213	NM_012481	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
198990	chr6	110904601	110904800	+	0	NA	Intergenic	L1PA5|LINE|L1	29916	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
146403	chr20	49320151	49320730	+	0	NA	Intergenic	(AAAT)n|Simple_repeat|Simple_repeat	39757	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
55573	chr12	106251101	106251930	+	0	NA	Intergenic	Intergenic	-3495	NM_006825	10970		NM_006825	ENSG00000136026	CKAP4	CLIMP-63|CLIMP63|ERGIC-63|p63	cytoskeleton associated protein 4	protein-coding
47050	chr12	542601	542800	+	0	NA	intron (NM_173593, intron 3 of 19)	intron (NM_173593, intron 3 of 19)	43786	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
30286	chr10	75216501	75216700	+	0	NA	intron (NM_003375, intron 5 of 10)	intron (NM_003375, intron 5 of 10)	6446	NM_001184783	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
151206	chr21	45138271	45139200	+	0	NA	intron (NR_027673, intron 3 of 12)	intron (NR_027673, intron 3 of 12)	-13795	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
78469	chr15	92892371	92892630	+	0	NA	intron (NR_037600, intron 4 of 4)	MER58A|DNA|hAT-Charlie	-7824	NM_001271	1106		NM_001271	ENSG00000173575	CHD2	DEE94|EEOC	chromodomain helicase DNA binding protein 2	protein-coding
81400	chr16	6549351	6549530	+	0	NA	intron (NM_001142333, intron 2 of 14)	GA-rich|Low_complexity|Low_complexity	-224369	NM_001142334	54715		NM_018723	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding fox-1 homolog 1	protein-coding
52215	chr12	54381021	54381800	+	0	NA	intron (NM_001290002, intron 3 of 8)	intron (NM_001290002, intron 3 of 8)	3323	NM_001290001	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
81168	chr16	4428651	4429500	+	0	NA	intron (NM_001286516, intron 1 of 8)	AluY|SINE|Alu	3207	NM_005147	9093		NM_005147	ENSG00000103423	DNAJA3	HCA57|TID1|Tid1-L|Tid1-S|hTID-1	DnaJ heat shock protein family (Hsp40) member A3	protein-coding
141086	chr2	238319821	238322050	+	0	NA	intron (NM_001139490, intron 1 of 14)	G-rich|Low_complexity|Low_complexity	391	NM_001139490	26146		NM_015650	ENSG00000204104	TRAF3IP1	CFAP116|FAP116|IFT54|MIP-T3|MIPT3|SLSN9	TRAF3 interacting protein 1	protein-coding
130694	chr2	86555071	86555630	+	0	NA	intron (NM_001198954, intron 3 of 7)	intron (NM_001198954, intron 3 of 7)	8093	NM_001193517	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
27325	chr10	30527301	30527500	+	0	NA	Intergenic	AluSc|SINE|Alu	92754	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
219135	chr8	66112621	66113600	+	0	NA	Intergenic	CpG	-14019	NM_184086	84675		NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
34973	chr11	500701	501030	+	0	NA	intron (NM_203389, intron 2 of 9).2	AluSp|SINE|Alu	5903	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
29258	chr10	69122471	69122630	+	0	NA	Intergenic	AluSz|SINE|Alu	-1603	NM_001035260	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
144606	chr20	35820471	35821030	+	0	NA	intron (NM_016436, intron 2 of 17)	L2a|LINE|L2	48735	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
182316	chr5	58937251	58937430	+	0	NA	Intergenic	L1M2|LINE|L1	62558	NM_001197223	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
208596	chr7	72944671	72944900	+	0	NA	intron (NM_172020, intron 12 of 13)	L2a|LINE|L2	9978	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
187737	chr5	143448351	143448850	+	0	NA	Intergenic	Intergenic	-13088	NM_001018077	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
94203	chr17	28596171	28596530	+	0	NA	intron (NM_006461, intron 2 of 23)	intron (NM_006461, intron 2 of 23)	2675	NM_006461	10615		NM_006461	ENSG00000076382	SPAG5	DEEPEST|MAP126|hMAP126	sperm associated antigen 5	protein-coding
26276	chr10	14843201	14843600	+	0	NA	exon (NM_001378785, exon 5 of 5)	exon (NM_001378785, exon 5 of 5)	5094	NM_001378785	100421372		NM_001378785	ENSG00000284024	MSANTD7	-	Myb/SANT DNA binding domain containing 7	protein-coding
19170	chr1	171793971	171794380	+	0	NA	intron (NM_014955, intron 6 of 7)	intron (NM_014955, intron 6 of 7)	12515	NM_014955	51603		NM_014955	ENSG00000010165	METTL13	5630401D24Rik|CGI-01|DFNB26|DFNB26M|DFNM1|EEF1AKNMT|KIAA0859|feat	methyltransferase 13, eEF1A N-terminus and K55	protein-coding
172171	chr4	1227221	1227830	+	0	NA	intron (NM_001377193, intron 4 of 9)	intron (NM_001377193, intron 4 of 9)	17405	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
27473	chr10	32042551	32042850	+	0	NA	intron (NM_004521, intron 2 of 25)	intron (NM_004521, intron 2 of 25)	13725	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
4202	chr1	19447571	19448030	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	36495	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
24655	chr1	246929701	246930350	+	0	NA	intron (NR_136586, intron 1 of 36)	AluSg|SINE|Alu	1333	NM_015446	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
198646	chr6	107809971	107810330	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	14163	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
20381	chr1	198154771	198155230	+	0	NA	Intergenic	L2a|LINE|L2	-1998	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
203918	chr7	1512651	1513630	+	0	NA	Intergenic	Intergenic	-8751	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
236010	chrX	54815651	54815950	+	0	NA	intron (NM_201222, intron 12 of 12)	intron (NM_201222, intron 12 of 12)	1430	NR_002953	677799		NR_002953	ENSG00000221716	SNORA11	SNORA11A|U107	small nucleolar RNA, H/ACA box 11	snoRNA
13687	chr1	116666771	116667980	+	0	NA	intron (NM_001007237, intron 1 of 10)	CpG	358	NM_001007237	3321		NM_001542	ENSG00000143061	IGSF3	EWI-3|LCDD|V8	immunoglobulin superfamily member 3	protein-coding
103070	chr17	77282801	77284550	+	0	NA	intron (NM_001293695, intron 1 of 10)	intron (NM_001293695, intron 1 of 10)	-1778	NR_136503	105371907		NR_136503	ENSG00000263718	SEPTIN9-DT	-	SEPTIN9 divergent transcript	ncRNA
148016	chr20	63100101	63100300	+	0	NA	intron (NR_152601, intron 1 of 2)	intron (NR_152601, intron 1 of 2)	-1092	NR_003244	768096		NR_003244		HAR1A	HAR1F|LINC00064|NCRNA00064	highly accelerated region 1A	ncRNA
144956	chr20	37136771	37137130	+	0	NA	intron (NM_213631, intron 13 of 13)	L1MC4|LINE|L1	-40953	NM_002895	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
228247	chr9	97982701	97984000	+	0	NA	promoter-TSS (NM_006401)	promoter-TSS (NM_006401)	9	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
213571	chr7	139339051	139339400	+	0	NA	Intergenic	Intergenic	-1134	NM_001244585	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
136978	chr2	190443701	190444100	+	0	NA	intron (NM_001375987, intron 2 of 6)	AluJb|SINE|Alu	-25593	NM_001375994	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
161997	chr3	46373701	46373900	+	0	NA	exon (NM_000579, exon 3 of 3)	exon (NM_000579, exon 3 of 3)	3658	NM_001100168	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
98833	chr17	48423951	48424480	+	0	NA	intron (NM_001075099, intron 1 of 12)	MLT1A0|LTR|ERVL-MaLR	5999	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
233523	chrX	12971	13130	+	0	NA	Intergenic	AluJr|SINE|Alu	-263306	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228323	chr9	98256821	98257580	+	0	NA	Intergenic	Arthur1C|DNA|hAT-Tip100	-1551	NM_001267571	55357		NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
26083	chr10	13116031	13117000	+	0	NA	intron (NM_001008212, intron 6 of 14)	intron (NM_001008212, intron 6 of 14)	16352	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
119707	chr19	41133101	41133550	+	0	NA	Intergenic	Intergenic	18893	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
192824	chr6	27098771	27098930	+	0	NA	Intergenic	LTR43|LTR|ERV1	33945	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
220740	chr8	102133071	102133430	+	0	NA	Intergenic	L1PA3|LINE|L1	7818	NR_049859	100847001		NR_049859	ENSG00000266756	MIR5680	-	microRNA 5680	ncRNA
136586	chr2	178193951	178195050	+	0	NA	promoter-TSS (NM_032523)	promoter-TSS (NM_032523)	-12	NM_001201481	114880		NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
91364	chr17	4539171	4539530	+	0	NA	TTS (NM_001124758)	TTS (NM_001124758)	16034	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
163977	chr3	53049071	53049680	+	0	NA	Intergenic	MIR|SINE|MIR	-3302	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
234888	chrX	30652771	30654080	+	0	NA	promoter-TSS (NM_001128127)	promoter-TSS (NM_001128127)	2	NM_000167	2710		NM_000167	ENSG00000198814	GK	GK1|GKD	glycerol kinase	protein-coding
182537	chr5	65676201	65676400	+	0	NA	intron (NM_019072, intron 8 of 10)	AluSz6|SINE|Alu	45809	NM_019072	54557		NM_019072	ENSG00000197860	SGTB	SGT2	small glutamine rich tetratricopeptide repeat co-chaperone beta	protein-coding
23498	chr1	228691971	228692330	+	0	NA	intron (NR_037962, intron 1 of 2)	intron (NR_037962, intron 1 of 2)	-43329	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
166919	chr3	125035051	125035450	+	0	NA	intron (NM_020733, intron 1 of 16)	L1ME4a|LINE|L1	20747	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
188115	chr5	150383771	150384130	+	0	NA	3' UTR (NM_001008657, exon 18 of 18)	3' UTR (NM_001008657, exon 18 of 18)	26253	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
26756	chr10	22708221	22709280	+	0	NA	intron (NM_005028, intron 1 of 9)	MER5A1|DNA|hAT-Charlie	5358	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
29778	chr10	72270071	72270230	+	0	NA	Intergenic	AluSc|SINE|Alu	-3774	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
101090	chr17	64938651	64939230	+	0	NA	Intergenic	Intergenic	-19449	NM_001303255	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
211591	chr7	105804121	105804380	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	72335	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
3072	chr1	12181671	12181830	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	-9963	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
62521	chr13	99516271	99516630	+	0	NA	intron (NM_004800, intron 1 of 16)	intron (NM_004800, intron 1 of 16)	14978	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
77924	chr15	89315751	89316050	+	0	NA	TTS (NM_001126131)	TTS (NM_001126131)	10910	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
181185	chr5	39106301	39106580	+	0	NA	3' UTR (NM_018594, exon 19 of 19)	3' UTR (NM_018594, exon 19 of 19)	-32041	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
23105	chr1	226674151	226674250	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	868	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
184233	chr5	96614871	96615030	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-47087	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
51456	chr12	52050271	52053430	+	0	NA	intron (NM_173157, intron 1 of 6)	intron (NM_173157, intron 1 of 6)	408	NM_173157	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
106167	chr18	9960321	9960580	+	0	NA	TTS (NM_003574)	TTS (NM_003574)	46434	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
154063	chr22	30635201	30636950	+	0	NA	5' UTR (NM_001318370, exon 1 of 3)	5' UTR (NM_001318370, exon 1 of 3)	260	NM_001318370	339665		NM_001001479	ENSG00000100036	SLC35E4	-	solute carrier family 35 member E4	protein-coding
24214	chr1	236109271	236109700	+	0	NA	Intergenic	Intergenic	-33054	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
145795	chr20	45407861	45409080	+	0	NA	non-coding (NR_003189, exon 4 of 6)	non-coding (NR_003189, exon 4 of 6)	181	NM_001048225	55861		NM_018478	ENSG00000244274	DBNDD2	C20orf35|CK1BP|HSMNP1	dysbindin domain containing 2	protein-coding
236169	chrX	65163351	65163450	+	0	NA	Intergenic	L1PA3|LINE|L1	-128659	NM_001178032	55906		NM_018684	ENSG00000126970	ZC4H2	HCA127|KIAA1166|MCS|MRXS4|WRWF|WRWFFR|WWS	zinc finger C4H2-type containing	protein-coding
155465	chr22	38484621	38484950	+	0	NA	3' UTR (NM_001098504, exon 13 of 13)	3' UTR (NM_001098504, exon 13 of 13)	16689	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
117368	chr19	19562551	19562650	+	0	NA	intron (NM_025245, intron 7 of 7)	intron (NM_025245, intron 7 of 7)	24335	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
140113	chr2	231490071	231490250	+	0	NA	Intergenic	LTR13|LTR|ERVK	24179	NR_024079	151477		NM_173513	ENSG00000181798	LINC00471	C2orf52	long intergenic non-protein coding RNA 471	ncRNA
100388	chr17	60148101	60148700	+	0	NA	Intergenic	Intergenic	-1573	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
183753	chr5	81514021	81514280	+	0	NA	intron (NM_001256733, intron 4 of 15)	intron (NM_001256733, intron 4 of 15)	-120016	NM_130767	134526		NM_130767	ENSG00000172497	ACOT12	CACH-1|Cach|STARD15|THEAL	acyl-CoA thioesterase 12	protein-coding
11624	chr1	91730851	91731100	+	0	NA	intron (NR_036634, intron 6 of 17)	intron (NR_036634, intron 6 of 17)	155176	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
196332	chr6	43165271	43165850	+	0	NA	Intergenic	AluY|SINE|Alu	-5709	NM_003131	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
81679	chr16	11128621	11129380	+	0	NA	intron (NM_015226, intron 21 of 22)	L2|LINE|L2	127182	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
85671	chr16	56352751	56353050	+	0	NA	intron (NM_020988, intron 7 of 8)	intron (NM_020988, intron 7 of 8)	72089	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
96752	chr17	41701471	41702050	+	0	NA	Intergenic	AluSx|SINE|Alu	-10571	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
183904	chr5	87382701	87383180	+	0	NA	intron (NM_022650, intron 20 of 24)	AluJr4|SINE|Alu	29964	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
173638	chr4	13527351	13528100	+	0	NA	non-coding (NR_034054, exon 4 of 4)	non-coding (NR_034054, exon 4 of 4)	3692	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
64793	chr14	34862971	34863450	+	0	NA	intron (NM_013448, intron 2 of 26)	AluSp|SINE|Alu	-10981	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
42773	chr11	72748721	72749550	+	0	NA	intron (NM_001040118, intron 1 of 34)	intron (NM_001040118, intron 1 of 34)	3254	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
104925	chr17	81920221	81921780	+	0	NA	3' UTR (NM_002359, exon 3 of 3)	3' UTR (NM_002359, exon 3 of 3)	2466	NM_032711	4097		NM_002359	ENSG00000197063	MAFG	hMAF	MAF bZIP transcription factor G	protein-coding
239184	chrY	12593451	12594000	+	0	NA	Intergenic	LTR21B|LTR|ERV1	-68642	NR_001545	64595		NR_001545	ENSG00000114374	TTTY15	NCRNA00138	testis expressed transcript, Y-linked 15	ncRNA
218487	chr8	51939901	51940100	+	0	NA	Intergenic	LTR8|LTR|ERV1	-40814	NM_001286782	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
29941	chr10	73417051	73417350	+	0	NA	Intergenic	AluY|SINE|Alu	-3142	NM_004034	310		NM_001156	ENSG00000138279	ANXA7	ANX7|SNX|SYNEXIN	annexin A7	protein-coding
16020	chr1	152110251	152110580	+	0	NA	exon (NM_007113, exon 3 of 3)	exon (NM_007113, exon 3 of 3)	5039	NM_007113	7062		NM_007113	ENSG00000159450	TCHH	THH|THL|TRHY|UHS3	trichohyalin	protein-coding
142898	chr20	17964471	17964630	+	0	NA	intron (NM_001282454, intron 1 of 12)	intron (NM_001282454, intron 1 of 12)	-1604	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
31594	chr10	97356521	97357250	+	0	NA	3' UTR (NM_001284337, exon 31 of 31)	3' UTR (NM_001284337, exon 31 of 31)	-22156	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
14299	chr1	143795371	143795730	+	0	NA	intron (NR_145442, intron 1 of 1)	intron (NR_145442, intron 1 of 1)	1950	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
66382	chr14	61488221	61488700	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	81734	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
224478	chr9	16183851	16184150	+	0	NA	Intergenic	Intergenic	92313	NM_001364979	100129385		NM_001271829	ENSG00000205549	LINC03041	C9orf92|Em:AL513424.1	long intergenic non-protein coding RNA 3041	ncRNA
183654	chr5	80259051	80259150	+	0	NA	Intergenic	MER34C2|LTR|ERV1	-3052	NR_126060	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
66518	chr14	61728171	61728330	+	0	NA	intron (NM_181054, intron 6 of 13)	intron (NM_181054, intron 6 of 13)	20839	NR_045406	100750247		NR_045406		HIF1A-AS2	3'aHIF-1A|aHIF	HIF1A antisense RNA 2	ncRNA
128450	chr2	55610571	55611430	+	0	NA	intron (NM_020463, intron 2 of 14)	AluJr|SINE|Alu	6622	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
12426	chr1	101520271	101520530	+	0	NA	Intergenic	L1MA4|LINE|L1	196563	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
109113	chr18	80103571	80104280	+	0	NA	Intergenic	MER89-int|LTR|ERV1	-5337	NM_014913	22850		NM_014913	ENSG00000101544	ADNP2	ZNF508	ADNP homeobox 2	protein-coding
52654	chr12	56296351	56296950	+	0	NA	intron (NM_004077, intron 1 of 10)	intron (NM_004077, intron 1 of 10)	3680	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
149388	chr21	31108971	31109130	+	0	NA	Intergenic	MER34A1|LTR|ERV1	51890	NM_001353684	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
150438	chr21	42438521	42438780	+	0	NA	intron (NM_001243467, intron 10 of 11)	L2|LINE|L2	34748	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
28007	chr10	43162371	43162800	+	0	NA	intron (NR_135077, intron 5 of 8)	intron (NR_135077, intron 5 of 8)	7688	NM_001319656	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
155572	chr22	38738151	38739330	+	0	NA	exon (NM_015374, exon 16 of 18)	exon (NM_015374, exon 16 of 18)	16726	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
180810	chr5	32415351	32415650	+	0	NA	intron (NR_144318, intron 4 of 18)	(GT)n|Simple_repeat|Simple_repeat	-21025	NR_030305	693164		NR_030305	ENSG00000207956	MIR579	MIRN579|hsa-mir-579	microRNA 579	ncRNA
178529	chr4	150998101	150998360	+	0	NA	intron (NM_001367550, intron 2 of 56)	AluSp|SINE|Alu	17037	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
93533	chr17	19041821	19042080	+	0	NA	intron (NM_001330148, intron 1 of 3)	intron (NM_001330148, intron 1 of 3)	5007	NM_006613	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
211417	chr7	105049101	105050180	+	0	NA	intron (NM_182931, intron 3 of 26)	AluSq2|SINE|Alu	35435	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
193542	chr6	30605721	30606450	+	0	NA	intron (NM_001376195, intron 9 of 19).6	intron (NM_001376195, intron 9 of 19).6	11158	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
27095	chr10	27464751	27465550	+	0	NA	Intergenic	Intergenic	-39154	NR_046172	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
77368	chr15	82822401	82822850	+	0	NA	intron (NM_001080435, intron 5 of 9)	AluSx|SINE|Alu	12997	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
121841	chr19	48170301	48171500	+	0	NA	promoter-TSS (NM_001289064)	promoter-TSS (NM_001289064)	220	NM_199341	374920		NM_199341	ENSG00000185453	ZSWIM9	C19orf68	zinc finger SWIM-type containing 9	protein-coding
6437	chr1	28232551	28233830	+	0	NA	promoter-TSS (NM_014280)	promoter-TSS (NM_014280)	-161	NR_159454	22826		NM_014280	ENSG00000126698	DNAJC8	HSPC331|SPF31	DnaJ heat shock protein family (Hsp40) member C8	protein-coding
4239	chr1	19557951	19558250	+	0	NA	Intergenic	AluJb|SINE|Alu	38732	NR_135054	105378614		NR_135054	ENSG00000235185	MICOS10-DT	-	MICOS10 divergent transcript	ncRNA
142866	chr20	17665801	17666600	+	0	NA	intron (NM_004587, intron 1 of 24)	L1MEd|LINE|L1	16042	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
185772	chr5	132385021	132385850	+	0	NA	exon (NM_001308122, exon 5 of 11)	exon (NM_001308122, exon 5 of 11)	-15519	NR_110997	553103		NR_110997	ENSG00000233006	MIR3936HG	SLC22A5-AS1	MIR3936 host gene	ncRNA
25340	chr10	6268851	6269150	+	0	NA	Intergenic	AluJb|SINE|Alu	-57544	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
198679	chr6	107957801	107959480	+	0	NA	promoter-TSS (NM_007214)	promoter-TSS (NM_007214)	-432	NM_007214	11231		NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L	SEC63 homolog, protein translocation regulator	protein-coding
69148	chr14	92558571	92558930	+	0	NA	intron (NM_024832, intron 2 of 9)	LTR16C|LTR|ERVL	-17484	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
22263	chr1	212667201	212668000	+	0	NA	Intergenic	Intergenic	32240	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
177873	chr4	128663451	128663550	+	0	NA	Intergenic	Intergenic	-146200	NM_199320	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
116085	chr19	17258251	17258550	+	0	NA	intron (NM_031941, intron 7 of 12)	intron (NM_031941, intron 7 of 12)	6345	NM_001297703	83878		NM_031941	ENSG00000130307	USHBP1	AIEBP|MCC2	USH1 protein network component harmonin binding protein 1	protein-coding
168770	chr3	151274951	151275450	+	0	NA	intron (NM_014879, intron 1 of 2)	intron (NM_014879, intron 1 of 2)	3342	NM_014879	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
24722	chr1	247448021	247448350	+	0	NA	intron (NM_183395, intron 7 of 7)	intron (NM_183395, intron 7 of 7)	3797	NM_001004492	127623		NM_001004492	ENSG00000177535	OR2B11	-	olfactory receptor family 2 subfamily B member 11	protein-coding
200218	chr6	131443501	131443980	+	0	NA	Intergenic	L2a|LINE|L2	-129486	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
27060	chr10	27146671	27146930	+	0	NA	intron (NM_001253866, intron 2 of 17)	intron (NM_001253866, intron 2 of 17)	7584	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
91928	chr17	7326171	7326480	+	0	NA	exon (NM_001005408, exon 6 of 29)	exon (NM_001005408, exon 6 of 29)	3010	NM_032442	84461		NM_032442	ENSG00000215041	NEURL4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding
75048	chr15	64158321	64158580	+	0	NA	TTS (NM_024798)	TTS (NM_024798)	4572	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
74933	chr15	63741101	63741300	+	0	NA	intron (NM_003922, intron 12 of 77)	AluSg|SINE|Alu	92748	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
69841	chr14	99242321	99242600	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	29737	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
84508	chr16	30507201	30507530	+	0	NA	intron (NM_002209, intron 21 of 30)	AluYe5|SINE|Alu	3446	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
203692	chr7	1031421	1031950	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	-3253	NR_146965	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
140736	chr2	234455671	234456030	+	0	NA	Intergenic	Intergenic	-1255	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
49268	chr12	19484701	19485250	+	0	NA	intron (NM_153207, intron 3 of 7)	intron (NM_153207, intron 3 of 7)	44376	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
215180	chr7	155686501	155686700	+	0	NA	intron (NM_053043, intron 5 of 17)	L1PA5|LINE|L1	41939	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
48134	chr12	7903871	7904030	+	0	NA	Intergenic	Intergenic	-12754	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
52333	chr12	54982751	54983050	+	0	NA	promoter-TSS (NM_001098815)	promoter-TSS (NM_001098815)	-969	NM_001098815	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
53853	chr12	69736971	69737550	+	0	NA	intron (NR_110072, intron 1 of 3)	L2c|LINE|L2	1290	NR_159971	101928002		NR_110072	ENSG00000247131	LOC101928002	-	uncharacterized LOC101928002	ncRNA
191777	chr6	14124401	14124600	+	0	NA	intron (NM_001040280, intron 2 of 4)	intron (NM_001040280, intron 2 of 4)	6728	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
62670	chr13	102599351	102600250	+	0	NA	intron (NR_160411, intron 1 of 28)	intron (NR_160411, intron 1 of 28)	2814	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
150867	chr21	44098651	44099350	+	0	NA	intron (NM_003274, intron 21 of 22)	Charlie1a|DNA|hAT-Charlie	-8399	NM_005049	5822		NM_005049	ENSG00000241945	PWP2	EHOC-17|PWP2H|UTP1	PWP2 small subunit processome component	protein-coding
115686	chr19	16193351	16193850	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-4311	NM_032493	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
44690	chr11	111428951	111429250	+	0	NA	Intergenic	L1MB4|LINE|L1	-10914	NR_046085	100132078		NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
67686	chr14	73184151	73184750	+	0	NA	intron (NM_007318, intron 5 of 11)	SVA_F|Retroposon|SVA	47943	NM_007318	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
88651	chr16	85647071	85647430	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	33928	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
85520	chr16	50782621	50783080	+	0	NA	intron (NR_166071, intron 9 of 16)	intron (NR_166071, intron 9 of 16)	-23822	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
153553	chr22	26610071	26611080	+	0	NA	intron (NM_001887, intron 3 of 5)	intron (NM_001887, intron 3 of 5)	7452	NM_001887	1414		NM_001887	ENSG00000100122	CRYBB1	CATCN3|CTRCT17	crystallin beta B1	protein-coding
51305	chr12	51266471	51266630	+	0	NA	intron (NM_001031628, intron 2 of 3)	MER44D|DNA|TcMar-Tigger	3660	NM_001033873	57228		NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
30801	chr10	84429671	84430330	+	0	NA	intron (NM_001284240, intron 5 of 9)	L1M4|LINE|L1	4831	NM_001284242	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
30495	chr10	79289071	79289850	+	0	NA	intron (NM_020338, intron 8 of 24)	intron (NM_020338, intron 8 of 24)	-58009	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
229802	chr9	125407721	125408680	+	0	NA	Intergenic	CpG	146374	NM_001354295	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
11977	chr1	94417771	94419100	+	0	NA	promoter-TSS (NM_002858)	promoter-TSS (NM_002858)	46	NM_002858	5825		NM_002858	ENSG00000117528	ABCD3	ABC43|CBAS5|PMP70|PXMP1|ZWS2	ATP binding cassette subfamily D member 3	protein-coding
152737	chr22	21691601	21691800	+	0	NA	intron (NM_148175, intron 15 of 20)	AluY|SINE|Alu	25688	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
44665	chr11	110435151	110435800	+	0	NA	intron (NM_004109, intron 1 of 3)	intron (NM_004109, intron 1 of 3)	5527	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
98180	chr17	46101621	46101880	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSx3|SINE|Alu	91032	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
43815	chr11	86632801	86633000	+	0	NA	intron (NR_147828, intron 2 of 14)	intron (NR_147828, intron 2 of 14)	39298	NR_147831	10873		NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
94726	chr17	30729321	30729980	+	0	NA	intron (NR_144394, intron 1 of 8)	intron (NR_144394, intron 1 of 8)	20042	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
76331	chr15	74405601	74405950	+	0	NA	Intergenic	Intergenic	5657	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
60237	chr13	40565471	40565630	+	0	NA	intron (NM_002015, intron 1 of 2)	L2a|LINE|L2	-84544	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
30108	chr10	73983751	73984050	+	0	NA	Intergenic	L1MEc|LINE|L1	-14216	NM_014000	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
171456	chr3	196335871	196336230	+	0	NA	intron (NM_138461, intron 1 of 4)	intron (NM_138461, intron 1 of 4)	2338	NM_138461	116211		NM_138461	ENSG00000145107	TM4SF19	OCTM4	transmembrane 4 L six family member 19	protein-coding
174175	chr4	36291301	36291700	+	0	NA	intron (NR_165630, intron 3 of 10)	intron (NR_165630, intron 3 of 10)	9884	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
70033	chr14	100102971	100103130	+	0	NA	intron (NM_016337, intron 3 of 13)	AluSc|SINE|Alu	6464	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
206809	chr7	36970271	36970430	+	0	NA	intron (NM_014800, intron 16 of 21)	intron (NM_014800, intron 16 of 21)	14762	NM_001039459	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
160026	chr3	18418121	18419700	+	0	NA	intron (NM_001322876, intron 1 of 9)	intron (NM_001322876, intron 1 of 9)	6429	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
154369	chr22	33579501	33579700	+	0	NA	intron (NM_133642, intron 5 of 14)	intron (NM_133642, intron 5 of 14)	-7338	NM_001378630	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
136807	chr2	181683721	181684780	+	0	NA	Intergenic	CpG	-3585	NR_146175	4760		NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|T2D|bHLHa3	neuronal differentiation 1	protein-coding
195250	chr6	36384351	36384450	+	0	NA	intron (NM_001207040, intron 1 of 6)	L3|LINE|CR1	3269	NM_001207038	51513		NM_016135	ENSG00000010030	ETV7	TEL-2|TEL2|TELB	ETS variant transcription factor 7	protein-coding
109736	chr19	1099521	1100230	+	0	NA	Intergenic	AluSx|SINE|Alu	-4119	NM_002085	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
141534	chr2	241305201	241305630	+	0	NA	intron (NM_005336, intron 1 of 27)	AluSx|SINE|Alu	-9772	NM_006155	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
213820	chr7	141336821	141337190	+	0	NA	intron (NM_001195278, intron 2 of 3)	(ACC)n|Simple_repeat|Simple_repeat	-214405	NM_018238	55750		NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
157316	chr22	44595821	44596230	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	26685	NR_028411	388910		NM_001012986	ENSG00000187012	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA
77677	chr15	85615771	85616450	+	0	NA	intron (NM_007200, intron 8 of 36)	intron (NM_007200, intron 8 of 36)	-3840	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
117396	chr19	19610501	19610700	+	0	NA	intron (NM_025245, intron 1 of 7)	AluSz|SINE|Alu	8087	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
30460	chr10	79116171	79116680	+	0	NA	intron (NM_020338, intron 1 of 24)	L2c|LINE|L2	47459	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
125157	chr2	10028821	10030130	+	0	NA	Intergenic	Intergenic	13926	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
135754	chr2	169575951	169576050	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-2079	NM_001322049	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
72694	chr15	38566171	38566330	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-1436	NM_005739	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
193746	chr6	31269001	31270400	+	0	NA	intron (NM_001243042, intron 5 of 7).3	intron (NM_001243042, intron 5 of 7).3	2392	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
228268	chr9	98056281	98057980	+	0	NA	intron (NM_018946, intron 1 of 5)	L2b|LINE|L2	398	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
149626	chr21	33402851	33404750	+	0	NA	intron (NM_005534, intron 1 of 6)	CpG	387	NM_005534	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
176164	chr4	83260451	83260980	+	0	NA	Intergenic	MER66B|LTR|ERV1	24083	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
185576	chr5	131387821	131388130	+	0	NA	intron (NM_001038702, intron 3 of 4)	intron (NM_001038702, intron 3 of 4)	123922	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
12847	chr1	110067951	110068380	+	0	NA	intron (NM_006492, intron 1 of 3)	CpG	2507	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
102558	chr17	75849671	75849850	+	0	NA	intron (NM_012478, intron 2 of 7)	intron (NM_012478, intron 2 of 7)	-5356	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
117841	chr19	31351651	31352200	+	0	NA	Intergenic	CpG-14211	-2489	NR_138035	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
37838	chr11	33324651	33324750	+	0	NA	intron (NM_001048200, intron 2 of 15)	LTR16B1|LTR|ERVL	-51408	NM_012194	25758		NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549 like	protein-coding
58082	chr12	124566901	124569100	+	0	NA	promoter-TSS (NM_006312)	promoter-TSS (NM_006312)	-388	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
114727	chr19	13181551	13182480	+	0	NA	Intergenic	Intergenic	31604	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
166852	chr3	123258801	123259100	+	0	NA	intron (NM_012430, intron 5 of 6)	intron (NM_012430, intron 5 of 6)	57007	NM_012430	26984		NM_012430	ENSG00000121542	SEC22A	SEC22L2	SEC22 homolog A, vesicle trafficking protein	protein-coding
57166	chr12	121391551	121392600	+	0	NA	Intergenic	Intergenic	-8008	NM_025126	80196		NM_025126	ENSG00000170633	RNF34	CARP-1|CARP1|RFI|RIF|RIFF|hRFI	ring finger protein 34	protein-coding
208825	chr7	73669371	73672050	+	0	NA	intron (NM_001077621, intron 3 of 3)	AluSx|SINE|Alu	2879	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
37131	chr11	13340901	13341100	+	0	NA	intron (NM_001351821, intron 3 of 19)	MIRb|SINE|MIR	63210	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
145478	chr20	43814921	43815000	+	0	NA	Intergenic	L1PA2|LINE|L1	-79758	NR_134577	105372626		NR_134577	ENSG00000233277	LINC01728	-	long intergenic non-protein coding RNA 1728	ncRNA
35745	chr11	2135251	2135550	+	0	NA	exon (NM_001127598, exon 3 of 5)	exon (NM_001127598, exon 3 of 5)	-1191	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
123043	chr19	51272351	51272900	+	0	NA	intron (NR_136526, intron 1 of 2)	MIR|SINE|MIR	1359	NR_136526	105372444		NR_136526	ENSG00000268318	LINC01872	-	long intergenic non-protein coding RNA 1872	ncRNA
24526	chr1	244837171	244837950	+	0	NA	intron (NM_001312872, intron 2 of 4)	intron (NM_001312872, intron 2 of 4)	1902	NM_198076	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
140532	chr2	233241801	233242150	+	0	NA	Intergenic	Intergenic	-9596	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
238524	chrX	153691101	153691500	+	0	NA	intron (NM_005629, intron 2 of 12)	intron (NM_005629, intron 2 of 12)	1789	NM_001142806	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
223324	chr8	143821001	143821980	+	0	NA	intron (NM_001362895, intron 5 of 12)	intron (NM_001362895, intron 5 of 12)	-5717	NM_015356	23513		NM_015356	ENSG00000180900	SCRIB	CRIB1|SCRB1|SCRIB1|Vartul|oSCRIB	scribble planar cell polarity protein	protein-coding
95664	chr17	38260021	38260280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2901	NR_036750	440434		NR_036750	ENSG00000291088	NPEPPSP1	NPEPPSL1	NPEPPS pseudogene 1	pseudo
163999	chr3	53162901	53164350	+	0	NA	intron (NM_001316327, intron 1 of 18)	MIRb|SINE|MIR	2118	NM_001316327	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
101523	chr17	67843401	67843600	+	0	NA	intron (NM_182641, intron 1 of 27)	intron (NM_182641, intron 1 of 27)	17997	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
126539	chr2	28566201	28567430	+	0	NA	non-coding (NR_138141, exon 1 of 36)	non-coding (NR_138141, exon 1 of 36)	458	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
71496	chr14	106000921	106002180	+	0	NA	Intergenic	Intergenic	-29281	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
36168	chr11	3161621	3161880	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	3560	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
92983	chr17	17141771	17142400	+	0	NA	intron (NM_001364716, intron 7 of 23)	intron (NM_001364716, intron 7 of 23)	64248	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
100626	chr17	63600401	63601800	+	0	NA	exon (NM_016360, exon 1 of 5)	exon (NM_016360, exon 1 of 5)	205	NM_016360	51204		NM_016360	ENSG00000136463	TACO1	CCDC44|MC4DN8	translational activator of cytochrome c oxidase I	protein-coding
231070	chr9	129664271	129664430	+	0	NA	Intergenic	Intergenic	-1297	NM_016307	51450		NM_016307	ENSG00000167157	PRRX2	PMX2|PRX2	paired related homeobox 2	protein-coding
13181	chr1	112501721	112503130	+	0	NA	intron (NM_004185, intron 2 of 5)	intron (NM_004185, intron 2 of 5)	-6540	NM_024494	7482		NM_004185	ENSG00000134245	WNT2B	WNT13	Wnt family member 2B	protein-coding
135653	chr2	168402651	168402750	+	0	NA	Intergenic	Intergenic	-53572	NM_203463	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
200120	chr6	130213101	130213330	+	0	NA	intron (NM_001258275, intron 6 of 13)	AluJr|SINE|Alu	2670	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
36400	chr11	4069771	4070330	+	0	NA	non-coding (NR_168437, exon 6 of 11)	non-coding (NR_168437, exon 6 of 11)	-24635	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
131918	chr2	98835551	98836600	+	0	NA	intron (NM_207362, intron 3 of 9)	L1MC5a|LINE|L1	-64177	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
32006	chr10	100992101	100992500	+	0	NA	intron (NR_160742, intron 4 of 4)	AluSc8|SINE|Alu	4757	NM_001163813	56652		NM_021830	ENSG00000107815	TWNK	ATXN8|C10orf2|IOSCA|MTDPS7|PEO|PEO1|PEOA3|PRLTS5|SANDO|SCA8|TWINL	twinkle mtDNA helicase	protein-coding
56836	chr12	120235671	120236480	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	14088	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
8615	chr1	41663471	41663630	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-178867	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
121396	chr19	46937771	46938130	+	0	NA	intron (NM_004491, intron 3 of 6)	intron (NM_004491, intron 3 of 6)	76953	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
179189	chr4	173317001	173317430	+	0	NA	intron (NM_001375600, intron 9 of 10)	intron (NM_001375600, intron 9 of 10)	16554	NM_001130689	3148		NM_002129	ENSG00000164104	HMGB2	HMG2	high mobility group box 2	protein-coding
81902	chr16	11727401	11727600	+	0	NA	intron (NR_136674, intron 3 of 8)	intron (NR_136674, intron 3 of 8)	15357	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
138988	chr2	218295001	218295200	+	0	NA	intron (NM_015488, intron 2 of 9)	intron (NM_015488, intron 2 of 9)	-2523	NM_001321438	64114		NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
94522	chr17	29557701	29558080	+	0	NA	Intergenic	Intergenic	9147	NM_198147	116236		NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding
13888	chr1	119298671	119298830	+	0	NA	Intergenic	MamRep1527|LTR|LTR	-29502	NR_146623	105378934		NR_146623	ENSG00000232650	LINC01780	-	long intergenic non-protein coding RNA 1780	ncRNA
192108	chr6	16715971	16716580	+	0	NA	intron (NM_000332, intron 3 of 8)	L2c|LINE|L2	43909	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
224795	chr9	22225721	22225980	+	0	NA	Intergenic	L1PA4|LINE|L1	-216537	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
135903	chr2	171326001	171326850	+	0	NA	intron (NR_135568, intron 4 of 6)	intron (NR_135568, intron 4 of 6)	-95132	NM_001136554	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
89753	chr16	89446501	89447730	+	0	NA	intron (NR_110931, intron 2 of 2)	intron (NR_110931, intron 2 of 2)	16197	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
85379	chr16	50280521	50280780	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	-11966	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
109532	chr19	856821	857850	+	0	NA	Intergenic	AluY|SINE|Alu	-2329	NM_001928	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
81371	chr16	4949821	4950080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8380	NM_014692	9717		NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14 like lipid binding 5	protein-coding
87810	chr16	75564601	75565500	+	0	NA	Intergenic	Intergenic	-1329	NM_007285	11345		NM_007285	ENSG00000034713	GABARAPL2	ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2	GABA type A receptor associated protein like 2	protein-coding
84346	chr16	30203001	30203530	+	0	NA	intron (NM_177552, intron 6 of 7).2	intron (NM_177552, intron 6 of 7).2	3662	NR_002556	388242		NR_002556	ENSG00000290678	LOC388242	-	SAGA complex associated factor 29 pseudogene	pseudo
36861	chr11	10441871	10442400	+	0	NA	Intergenic	Intergenic	-8186	NM_001172431	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
15324	chr1	149887501	149889330	+	0	NA	promoter-TSS (NM_175065)	promoter-TSS (NM_175065)	-450	NM_175065	317772		NM_175065	ENSG00000184270	H2AC21	H2AB|HIST2H2AB	H2A clustered histone 21	protein-coding
136782	chr2	181465771	181466230	+	0	NA	intron (NM_000885, intron 2 of 27)	MIR|SINE|MIR	8614	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
143205	chr20	24955051	24956030	+	0	NA	intron (NM_003650, intron 1 of 3)	AluY|SINE|Alu	6271	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
191799	chr6	14275421	14275880	+	0	NA	Intergenic	Intergenic	9804	NR_108097	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
227591	chr9	92634751	92635150	+	0	NA	intron (NM_022755, intron 10 of 12)	intron (NM_022755, intron 10 of 12)	16900	NR_036505	100128361		NR_036505		LOC100128361	-	uncharacterized LOC100128361	ncRNA
19527	chr1	176196751	176197200	+	0	NA	intron (NM_022457, intron 1 of 19)	intron (NM_022457, intron 1 of 19)	10269	NM_001001740	64326		NM_022457	ENSG00000143207	COP1	CFAP78|FAP78|RFWD2|RNF200	COP1 E3 ubiquitin ligase	protein-coding
4495	chr1	21656851	21657150	+	0	NA	intron (NM_002885, intron 1 of 24)	L2a|LINE|L2	-5102	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
116553	chr19	18222121	18223100	+	0	NA	intron (NM_001330172, intron 2 of 15)	intron (NM_001330172, intron 2 of 15)	1883	NM_001098819	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
119750	chr19	41281171	41281330	+	0	NA	exon (NM_007040, exon 7 of 15)	exon (NM_007040, exon 7 of 15)	16169	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
88359	chr16	84576971	84577530	+	0	NA	intron (NM_021149, intron 3 of 3)	(TTGGTT)n|Simple_repeat|Simple_repeat	40828	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
26552	chr10	21607001	21607200	+	0	NA	intron (NR_136736, intron 6 of 25)	Tigger1|DNA|TcMar-Tigger	72868	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
187312	chr5	141614001	141614200	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	4900	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
48840	chr12	12365151	12366950	+	0	NA	intron (NM_058169, intron 2 of 3)	intron (NM_058169, intron 2 of 3)	8972	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
163124	chr3	50128201	50129900	+	0	NA	intron (NR_135301, intron 2 of 3)	AluSx|SINE|Alu	-26008	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
40223	chr11	63550551	63551600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	12304	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
55605	chr12	106903101	106903830	+	0	NA	Intergenic	Intergenic	-52257	NM_001319666	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
165884	chr3	106186051	106186300	+	0	NA	Intergenic	Intergenic	-316774	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
121368	chr19	46853551	46854100	+	0	NA	Intergenic	AluSx|SINE|Alu	-2979	NM_001301078	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
162413	chr3	48268171	48269700	+	0	NA	3' UTR (NM_016089, exon 4 of 4)	3' UTR (NM_016089, exon 4 of 4)	22743	NR_134638	101060195		NR_134638		FCF1P2	-	FCF1 pseudogene 2	pseudo
176505	chr4	94338901	94339100	+	0	NA	intron (NM_014485, intron 1 of 5)	intron (NM_014485, intron 1 of 5)	3836	NM_014485	27306		NM_014485	ENSG00000163106	HPGDS	GSTS|GSTS1|GSTS1-1|PGD2|PGDS	hematopoietic prostaglandin D synthase	protein-coding
229787	chr9	125238921	125239180	+	0	NA	exon (NM_005347, exon 5 of 8)	exon (NM_005347, exon 5 of 8)	2293	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
184421	chr5	98926771	98927700	+	0	NA	intron (NM_001376194, intron 1 of 35)	intron (NM_001376194, intron 1 of 35)	-1327	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
76639	chr15	75608571	75608730	+	0	NA	intron (NM_001042588, intron 5 of 8)	intron (NM_001042588, intron 5 of 8)	17075	NM_005701	10073		NM_005701	ENSG00000169371	SNUPN	KPNBL|RNUT1|Snurportin1	snurportin 1	protein-coding
115328	chr19	15113401	15113600	+	0	NA	intron (NM_033025, intron 7 of 7)	intron (NM_033025, intron 7 of 7)	6099	NM_001300910	85360		NM_033025	ENSG00000105137	SYDE1	7h3|SYD1	synapse defective Rho GTPase homolog 1	protein-coding
23733	chr1	232467371	232467600	+	0	NA	intron (NM_001377488, intron 8 of 21)	intron (NM_001377488, intron 8 of 21)	162648	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
73893	chr15	50675451	50676430	+	0	NA	intron (NR_149152, intron 1 of 38)	MIR|SINE|MIR	10857	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
157425	chr22	45163171	45164900	+	0	NA	promoter-TSS (NR_038956)	promoter-TSS (NR_038956)	110	NM_007172	10762		NM_007172	ENSG00000093000	NUP50	NPAP60|NPAP60L	nucleoporin 50	protein-coding
161690	chr3	43457201	43457600	+	0	NA	intron (NM_001346467, intron 12 of 13)	THE1D|LTR|ERVL-MaLR	-105438	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
73922	chr15	50882401	50883000	+	0	NA	Intergenic	AluSp|SINE|Alu	-25983	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
26044	chr10	12446071	12446430	+	0	NA	intron (NM_001351032, intron 3 of 11)	MER41A|LTR|ERV1	57268	NM_001351032	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
99578	chr17	50483451	50483750	+	0	NA	intron (NR_130911, intron 3 of 4)	intron (NR_130911, intron 3 of 4)	4740	NM_018346	55316		NM_018346	ENSG00000136444	RSAD1	HemW	radical S-adenosyl methionine domain containing 1	protein-coding
161946	chr3	46206801	46207000	+	0	NA	intron (NM_001295, intron 1 of 1)	intron (NM_001295, intron 1 of 1)	1413	NM_001295	1230		NM_001295	ENSG00000163823	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	C-C motif chemokine receptor 1	protein-coding
3227	chr1	13777221	13777950	+	0	NA	intron (NM_015866, intron 7 of 8)	L2a|LINE|L2	28170	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
16875	chr1	155833451	155834130	+	0	NA	intron (NM_001282861, intron 2 of 20)	GA-rich|Low_complexity|Low_complexity	23424	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
21640	chr1	206630951	206631350	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-4386	NM_003582	8444		NM_003582	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual specificity tyrosine phosphorylation regulated kinase 3	protein-coding
15968	chr1	151896121	151896380	+	0	NA	intron (NM_053055, intron 1 of 5)	AluSx|SINE|Alu	13261	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
9290	chr1	46424201	46424400	+	0	NA	Intergenic	L2c|LINE|L2	-9527	NR_045483	729041		NR_045483		FAAHP1	FAAH-OUT|FAAHOUT|LINC00505	fatty acid amide hydrolase pseudogene 1	pseudo
4005	chr1	18923271	18924030	+	0	NA	intron (NM_001136265, intron 1 of 8)	MIRb|SINE|MIR	-20851	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
198697	chr6	108117051	108118100	+	0	NA	Intergenic	Intergenic	-6058	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
59220	chr13	23383951	23384250	+	0	NA	intron (NM_014363, intron 2 of 9)	intron (NM_014363, intron 2 of 9)	-8592	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
229619	chr9	124012601	124013230	+	0	NA	intron (NM_004789, intron 1 of 4)	CpG	1147	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
228296	chr9	98103171	98103330	+	0	NA	intron (NM_014788, intron 2 of 5)	L1ME3G|LINE|L1	15972	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
41173	chr11	65620251	65620750	+	0	NA	intron (NM_032223, intron 9 of 34)	intron (NM_032223, intron 9 of 34)	4188	NM_032223	399909		NM_032223	ENSG00000197136	PCNX3	PCNXL3	pecanex 3	protein-coding
96556	chr17	40419371	40420230	+	0	NA	Intergenic	Intergenic	-1904	NM_001067	7153		NM_001067	ENSG00000131747	TOP2A	TOP2|TOP2alpha|TOPIIA|TP2A	DNA topoisomerase II alpha	protein-coding
208547	chr7	70698221	70698540	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-433764	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
123349	chr19	53872701	53874400	+	0	NA	exon (NM_001020821, exon 3 of 3)	exon (NM_001020821, exon 3 of 3)	4159	NM_001020818	91663		NM_138373	ENSG00000179820	MYADM	SB135	myeloid associated differentiation marker	protein-coding
138549	chr2	207541051	207541150	+	0	NA	intron (NR_163946, intron 1 of 8)	AluSq2|SINE|Alu	11138	NM_134442	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
153085	chr22	23400721	23401180	+	0	NA	intron (NR_003950, intron 2 of 5)	intron (NR_003950, intron 2 of 5)	1662	NR_003950	150244		NM_152509	ENSG00000290920	ZDHHC8BP	ZDHHC8P|ZDHHC8P1	ZDHHC8B, pseudogene	pseudo
39697	chr11	61738601	61739200	+	0	NA	intron (NM_006133, intron 16 of 19)	intron (NM_006133, intron 16 of 19)	-13736	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
164291	chr3	57596221	57596700	+	0	NA	intron (NM_001660, intron 1 of 5)	intron (NM_001660, intron 1 of 5)	884	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
227417	chr9	89604101	89607930	+	0	NA	exon (NM_006705, exon 4 of 4)	exon (NM_006705, exon 4 of 4)	1003	NM_006705	10912		NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
64438	chr14	24204851	24205150	+	0	NA	promoter-TSS (NM_001308067)	promoter-TSS (NM_001308067)	-696	NM_174944	283629		NM_174944	ENSG00000139908	TSSK4	C14orf20|STK22E|TSK-4|TSK4|TSSK5	testis specific serine kinase 4	protein-coding
170018	chr3	180931571	180931730	+	0	NA	intron (NM_001013439, intron 2 of 17)	intron (NM_001013439, intron 2 of 17)	18979	NM_001363882	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
235302	chrX	42531371	42531950	+	0	NA	Intergenic	Intergenic	246503	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
178390	chr4	147057221	147057630	+	0	NA	Intergenic	Intergenic	-111539	NM_031956	83894		NM_031956	ENSG00000137473	TTC29	NYD-SP14|SPGF42|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
133672	chr2	127073701	127073900	+	0	NA	intron (NM_139345, intron 2 of 15)	intron (NM_139345, intron 2 of 15)	8265	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
155776	chr22	39241501	39242570	+	0	NA	intron (NM_002608, intron 1 of 6)	intron (NM_002608, intron 1 of 6)	-1126	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
206612	chr7	35835501	35835700	+	0	NA	intron (NM_001788, intron 2 of 12)	intron (NM_001788, intron 2 of 12)	34381	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
224822	chr9	26943751	26944050	+	0	NA	intron (NM_001321546, intron 1 of 12)	AluJr|SINE|Alu	-3090	NM_001099223	80173		NM_025103	ENSG00000096872	IFT74	BBS22|CCDC2|CMG-1|CMG1|JBTS40|SPGF58	intraflagellar transport 74	protein-coding
131692	chr2	97734471	97736080	+	0	NA	exon (NM_001378594, exon 9 of 13)	exon (NM_001378594, exon 9 of 13)	1975	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
196689	chr6	44838251	44838350	+	0	NA	intron (NM_001350327, intron 9 of 9)	intron (NM_001350327, intron 9 of 9)	-286419	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
160299	chr3	27454671	27455580	+	0	NA	intron (NR_135544, intron 1 of 24)	L1ME3G|LINE|L1	1653	NM_003615	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
139151	chr2	219109201	219109800	+	0	NA	intron (NR_165304, intron 5 of 8)	intron (NR_165304, intron 5 of 8)	-48579	NM_002181	3549		NM_002181	ENSG00000163501	IHH	BDA1|HHG2	Indian hedgehog signaling molecule	protein-coding
128407	chr2	55227721	55228400	+	0	NA	non-coding (NR_148540, exon 2 of 10)	non-coding (NR_148540, exon 2 of 10)	-3843	NM_001135592	6233		NM_002954	ENSG00000143947	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80|eS31	ribosomal protein S27a	protein-coding
142909	chr20	17995771	17996830	+	0	NA	Intergenic	Intergenic	27282	NM_001310339	92667		NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
38245	chr11	36487871	36488430	+	0	NA	3' UTR (NM_145803, exon 8 of 8)	3' UTR (NM_145803, exon 8 of 8)	22122	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
43540	chr11	82895471	82895830	+	0	NA	intron (NM_199418, intron 1 of 9)	intron (NM_199418, intron 1 of 9)	4780	NM_005040	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
129066	chr2	65075921	65077630	+	0	NA	intron (NR_134966, intron 4 of 5)	intron (NR_134966, intron 4 of 5)	20359	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
3275	chr1	15246771	15247830	+	0	NA	promoter-TSS (NM_052929)	promoter-TSS (NM_052929)	75	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
82539	chr16	18384871	18385030	+	0	NA	non-coding (NR_146331, exon 15 of 38)	non-coding (NR_146331, exon 15 of 38)	-5540	NR_106828	102465461		NR_106828	ENSG00000278265	MIR6770-1	hsa-mir-6770-1	microRNA 6770-1	ncRNA
199763	chr6	125834371	125834880	+	0	NA	intron (NM_001199621, intron 2 of 14)	intron (NM_001199621, intron 2 of 14)	-15767	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
30962	chr10	87829971	87830430	+	0	NA	intron (NR_028492, intron 2 of 3)	Tigger11a|DNA|TcMar-Tigger	11887	NR_028492	142913		NM_152427	ENSG00000290782	CFL1P1	CFLP1	cofilin 1 pseudogene 1	pseudo
196560	chr6	44096451	44097230	+	0	NA	Intergenic	Intergenic	-22188	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
60551	chr13	41476401	41476800	+	0	NA	Intergenic	L1PA7|LINE|L1	19050	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
82768	chr16	21431971	21432330	+	0	NA	non-coding (NR_024456, exon 1 of 1).2	non-coding (NR_024456, exon 1 of 1).2	2305	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
71285	chr14	105277201	105277580	+	0	NA	intron (NM_001242788, intron 1 of 16)	intron (NM_001242788, intron 1 of 16)	-23384	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
212993	chr7	130993351	130993450	+	0	NA	intron (NR_109855, intron 2 of 4)	intron (NR_109855, intron 2 of 4)	79936	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
142659	chr20	5844251	5844830	+	0	NA	intron (NM_001303478, intron 3 of 3)	intron (NM_001303478, intron 3 of 3)	-66970	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
15094	chr1	148526501	148527630	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-43763	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
83055	chr16	22330551	22331430	+	0	NA	intron (NM_001258036, intron 19 of 19).2	AluSx|SINE|Alu	33581	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
150848	chr21	44063221	44064000	+	0	NA	exon (NM_003274, exon 7 of 23)	exon (NM_003274, exon 7 of 23)	-10714	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
166780	chr3	122482971	122483350	+	0	NA	intron (NM_002264, intron 2 of 13)	intron (NM_002264, intron 2 of 13)	31779	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
78593	chr15	93048821	93049280	+	0	NA	intron (NM_001166283, intron 3 of 3)	intron (NM_001166283, intron 3 of 3)	24106	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
69212	chr14	92690221	92691100	+	0	NA	Intergenic	Intergenic	57967	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
169583	chr3	170864551	170864650	+	0	NA	TTS (NM_001099645)	TTS (NM_001099645)	5595	NR_135259	200916		NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22 like 1	protein-coding
118075	chr19	34357151	34357450	+	0	NA	Intergenic	Intergenic	-7440	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
180429	chr5	10439671	10440030	+	0	NA	TTS (NR_102746)	TTS (NR_102746)	2001	NR_102746	100505845		NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
21011	chr1	202884871	202885030	+	0	NA	intron (NM_002871, intron 1 of 1)	AluSx1|SINE|Alu	4199	NM_002871	5877		NM_002871	ENSG00000183155	RABIF	MSS4|RASGFR3|RASGRF3	RAB interacting factor	protein-coding
25019	chr10	3554201	3554550	+	0	NA	intron (NR_131187, intron 1 of 1)	intron (NR_131187, intron 1 of 1)	-51537	NR_155744	101927880		NR_155743	ENSG00000233321	LINC02669	-	long intergenic non-protein coding RNA 2669	ncRNA
77171	chr15	80064471	80064830	+	0	NA	intron (NM_001242914, intron 1 of 6)	intron (NM_001242914, intron 1 of 6)	4490	NM_001242914	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
163670	chr3	52228051	52228530	+	0	NA	TTS (NM_007284)	TTS (NM_007284)	-2127	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
222791	chr8	142198151	142198650	+	0	NA	promoter-TSS (NR_024378)	promoter-TSS (NR_024378)	44	NR_024378	619434		NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA
208792	chr7	73592451	73592750	+	0	NA	TTS (NM_032954)	TTS (NM_032954)	-14021	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
176932	chr4	102829171	102829730	+	0	NA	non-coding (NR_131185, exon 1 of 3)	non-coding (NR_131185, exon 1 of 3)	136	NR_131185	105377348		NR_131185		UBE2D3-AS1	-	UBE2D3 antisense RNA 1	ncRNA
112143	chr19	5615301	5615630	+	0	NA	intron (NM_014649, intron 4 of 20)	AluJo|SINE|Alu	7311	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
88157	chr16	81686371	81687030	+	0	NA	intron (NM_030629, intron 10 of 20)	intron (NM_030629, intron 10 of 20)	21346	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
158554	chr3	4409301	4409700	+	0	NA	intron (NM_182760, intron 7 of 8)	intron (NM_182760, intron 7 of 8)	57769	NM_182760	285362		NM_182760	ENSG00000144455	SUMF1	AAPA3037|FGE|UNQ3037	sulfatase modifying factor 1	protein-coding
10456	chr1	66291051	66291550	+	0	NA	intron (NM_001037340, intron 5 of 14)	MIR|SINE|MIR	-40808	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
77878	chr15	88921001	88921200	+	0	NA	Intergenic	AluSc5|SINE|Alu	-7721	NM_001310320	4240		NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule EGF and factor V/VIII domain containing	protein-coding
34062	chr10	124801251	124802480	+	0	NA	promoter-TSS (NM_032182)	promoter-TSS (NM_032182)	46	NM_032182	23172		NM_032182	ENSG00000165660	ABRAXAS2	ABRO1|FAM175B|KIAA0157	abraxas 2, BRISC complex subunit	protein-coding
222460	chr8	139702901	139703450	+	0	NA	promoter-TSS (NM_001282534)	promoter-TSS (NM_001282534)	-52	NM_001282534	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
206966	chr7	38303701	38304150	+	0	NA	Intergenic	MIRb|SINE|MIR	-30278	NM_001003806	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
37720	chr11	31240371	31240530	+	0	NA	intron (NM_001367979, intron 9 of 38)	intron (NM_001367979, intron 9 of 38)	129289	NM_001367979	341019		NM_020869	ENSG00000170959	DCDC1	DCDC5	doublecortin domain containing 1	protein-coding
185549	chr5	131361551	131362050	+	0	NA	intron (NM_001038702, intron 2 of 4)	LTR1A2|LTR|ERV1	97747	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
193779	chr6	31368401	31368830	+	0	NA	Intergenic	L1ME3A|LINE|L1	-11436	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
6361	chr1	27843871	27845000	+	0	NA	intron (NM_138558, intron 5 of 6)	AluSx1|SINE|Alu	10034	NR_002997	677774		NR_002997	ENSG00000252947	SCARNA1	ACA35	small Cajal body-specific RNA 1	ncRNA
50624	chr12	48701201	48701750	+	0	NA	intron (NM_001240, intron 3 of 8)	intron (NM_001240, intron 3 of 8)	15232	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
196717	chr6	45054501	45054800	+	0	NA	intron (NM_001350327, intron 2 of 9)	L1M4a2|LINE|L1	143120	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
6486	chr1	28369301	28370930	+	0	NA	intron (NM_001350158, intron 1 of 14)	CpG	375	NM_001350158	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
199664	chr6	122458151	122458450	+	0	NA	intron (NM_020755, intron 2 of 9)	intron (NM_020755, intron 2 of 9)	13507	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
155749	chr22	39178371	39178880	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-25945	NM_175709	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
182425	chr5	61423401	61423600	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	91242	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
119882	chr19	41533571	41534200	+	0	NA	Intergenic	LTR76|LTR|ERV1	-1613	NR_110724	101927931		NR_110724	ENSG00000270164	LINC01480	-	long intergenic non-protein coding RNA 1480	ncRNA
3746	chr1	16642801	16643300	+	0	NA	Intergenic	Intergenic	-2524	NR_027504	11209		NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
200674	chr6	137217651	137218080	+	0	NA	intron (NM_001363526, intron 1 of 7)	intron (NM_001363526, intron 1 of 7)	1331	NM_001363526	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
89086	chr16	88475121	88475580	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	6432	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
165011	chr3	71386051	71386350	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-81429	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
188754	chr5	157573251	157573550	+	0	NA	intron (NM_033274, intron 1 of 22)	LTR37B|LTR|ERV1	2375	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
109905	chr19	1284201	1284980	+	0	NA	Intergenic	Intergenic	-1283	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
85177	chr16	46827921	46828580	+	0	NA	intron (NM_001001436, intron 1 of 3)	intron (NM_001001436, intron 1 of 3)	2798	NR_145837	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
195207	chr6	36119571	36119730	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-10863	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
125100	chr2	9737121	9738230	+	0	NA	Intergenic	Intergenic	-105767	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
237455	chrX	119727051	119727650	+	0	NA	Intergenic	Intergenic	-31238	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
10305	chr1	64860751	64861150	+	0	NA	intron (NM_001321857, intron 8 of 24)	(GT)n|Simple_repeat|Simple_repeat	105599	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
2496	chr1	9685551	9686250	+	0	NA	intron (NR_126368, intron 1 of 1)	intron (NR_126368, intron 1 of 1)	1674	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
46562	chr11	128491601	128491950	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	30535	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
225606	chr9	36166021	36167100	+	0	NA	Intergenic	CpG	-2828	NM_005893	881		NM_005893	ENSG00000185972	CCIN	BTBD20|KBTBD14	calicin	protein-coding
136850	chr2	186484101	186484500	+	0	NA	Intergenic	Intergenic	-1960	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
138576	chr2	207737701	207737900	+	0	NA	intron (NM_001142300, intron 4 of 7)	MER20|DNA|hAT-Charlie	-17007	NR_039934	100616361		NR_039934	ENSG00000284079	MIR4775	-	microRNA 4775	ncRNA
123376	chr19	53902801	53903580	+	0	NA	intron (NM_001316329, intron 15 of 18)	intron (NM_001316329, intron 15 of 18)	-6088	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
89273	chr16	88680721	88681400	+	0	NA	intron (NM_178310, intron 2 of 2)	intron (NM_178310, intron 2 of 2)	5447	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
112392	chr19	6100301	6100700	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	10000	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
152312	chr22	20346351	20346750	+	0	NA	intron (NR_136572, intron 4 of 6)	intron (NR_136572, intron 4 of 6)	7637	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
220518	chr8	100677271	100677850	+	0	NA	Intergenic	MIRb|SINE|MIR	25464	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
206998	chr7	38345551	38346400	+	0	NA	intron (NR_040085, intron 1 of 3)	intron (NR_040085, intron 1 of 3)	4398	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
233090	chr9	137107301	137107800	+	0	NA	non-coding (NR_045720, exon 12 of 13)	non-coding (NR_045720, exon 12 of 13)	7183	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
50977	chr12	49557501	49558300	+	0	NA	TTS (NM_001278341)	TTS (NM_001278341)	8539	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
41008	chr11	65421121	65421800	+	0	NA	Intergenic	Intergenic	-1338	NR_028272	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
40706	chr11	64789751	64790050	+	0	NA	exon (NM_001307990, exon 30 of 32)	exon (NM_001307990, exon 30 of 32)	-11358	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
20689	chr1	200556151	200556250	+	0	NA	intron (NM_001305792, intron 25 of 27)	intron (NM_001305792, intron 25 of 27)	62638	NM_001305792	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
178738	chr4	153090721	153090980	+	0	NA	Intergenic	Intergenic	-61313	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
109655	chr19	1009871	1010030	+	0	NA	TTS (NM_138690)	TTS (NM_138690)	9531	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
87458	chr16	71422001	71422230	+	0	NA	intron (NR_146574, intron 1 of 2)	MIR3|SINE|MIR	4349	NR_146574	105371333		NR_146574		LINC02136	-	long intergenic non-protein coding RNA 2136	ncRNA
86594	chr16	67274301	67275000	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-3512	NM_001129727	25894		NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
7223	chr1	32319321	32320600	+	0	NA	intron (NM_004964, intron 3 of 13)	AluY|SINE|Alu	16273	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
69724	chr14	98225151	98225680	+	0	NA	Intergenic	Intergenic	-247291	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
225956	chr9	41106521	41107030	+	0	NA	intron (NR_147036, intron 3 of 6)	SATR1|Satellite|Satellite	1037	NR_015361	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
161979	chr3	46336671	46336930	+	0	NA	Intergenic	AluYf1|SINE|Alu	-16944	NM_001123041	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
162295	chr3	47410851	47411350	+	0	NA	exon (NM_015466, exon 20 of 25)	exon (NM_015466, exon 20 of 25)	30079	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
18312	chr1	161170171	161170780	+	0	NA	TTS (NM_001199873)	TTS (NM_001199873)	3829	NM_001365398	5498		NM_000309	ENSG00000143224	PPOX	PPO|V290M|VP|VPCO	protoporphyrinogen oxidase	protein-coding
107758	chr18	50376251	50376350	+	0	NA	intron (NM_001039535, intron 2 of 6).2	Tigger3b|DNA|TcMar-Tigger	1254	NM_001039535	220134		NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
213419	chr7	137999251	137999550	+	0	NA	intron (NM_001253775, intron 1 of 3)	(AC)n|Simple_repeat|Simple_repeat	2686	NM_194071	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
121431	chr19	47025671	47025830	+	0	NA	intron (NM_002517, intron 3 of 11)	AluJb|SINE|Alu	5913	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
147862	chr20	62817871	62818230	+	0	NA	intron (NM_001853, intron 2 of 31)	intron (NM_001853, intron 2 of 31)	1000	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
46291	chr11	124871071	124871230	+	0	NA	intron (NM_022370, intron 7 of 27)	intron (NM_022370, intron 7 of 27)	-5032	NR_163409	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
140905	chr2	237693301	237694700	+	0	NA	intron (NM_001137551, intron 1 of 11)	MER46C|DNA|TcMar-Tigger	1795	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
137271	chr2	195171751	195171850	+	0	NA	Intergenic	Intergenic	441205	NR_110223	101927431		NR_110223	ENSG00000230173	LINC01790	-	long intergenic non-protein coding RNA 1790	ncRNA
181202	chr5	39156071	39156730	+	0	NA	intron (NM_199335, intron 2 of 17)	MLT1K|LTR|ERVL-MaLR	63163	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
216477	chr8	19757701	19758180	+	0	NA	promoter-TSS (NM_001354475)	promoter-TSS (NM_001354475)	89	NM_001354480	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
117347	chr19	19535721	19536450	+	0	NA	intron (NM_198537, intron 6 of 6)	intron (NM_198537, intron 6 of 6)	-2180	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
36679	chr11	8593701	8594380	+	0	NA	promoter-TSS (NM_001289061)	promoter-TSS (NM_001289061)	-64	NM_030906	65975		NM_030906	ENSG00000130413	STK33	-	serine/threonine kinase 33	protein-coding
188653	chr5	157241871	157242230	+	0	NA	intron (NM_005546, intron 11 of 16)	intron (NM_005546, intron 11 of 16)	-24073	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
117223	chr19	19415421	19415850	+	0	NA	intron (NM_001384527, intron 1 of 11)	AluSc|SINE|Alu	9960	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
200773	chr6	137866271	137868500	+	0	NA	5' UTR (NM_001270508, exon 1 of 9)	5' UTR (NM_001270508, exon 1 of 9)	126	NM_001270507	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
106148	chr18	9619501	9620080	+	0	NA	TTS (NR_110773)	TTS (NR_110773)	4526	NR_110774	101927323		NR_110773	ENSG00000263627	PPP4R1-AS1	-	PPP4R1 antisense RNA 1	ncRNA
129098	chr2	65122551	65123980	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSc8|SINE|Alu	6841	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
2006	chr1	6745951	6746050	+	0	NA	Intergenic	AluJo|SINE|Alu	18473	NR_104621	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
177091	chr4	108067551	108067850	+	0	NA	intron (NM_016269, intron 9 of 11)	AluSq2|SINE|Alu	63036	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
29035	chr10	67521001	67521230	+	0	NA	intron (NM_001291133, intron 6 of 8)	intron (NM_001291133, intron 6 of 8)	-117705	NR_106973	102466814		NR_106973	ENSG00000276866	MIR7151	hsa-mir-7151	microRNA 7151	ncRNA
54077	chr12	76046771	76046930	+	0	NA	3' UTR (NM_004537, exon 15 of 15)	3' UTR (NM_004537, exon 15 of 15)	-15074	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
140655	chr2	233855571	233855930	+	0	NA	Intergenic	Intergenic	-1184	NM_001282963	55355		NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
61530	chr13	60152951	60153050	+	0	NA	intron (NR_046540, intron 2 of 2)	Charlie29a|DNA|hAT-Charlie	8302	NR_046540	100874196		NR_046540		DIAPH3-AS2	DIPAH3-AS2	DIAPH3 antisense RNA 2	ncRNA
91874	chr17	7249851	7250180	+	0	NA	intron (NM_015343, intron 2 of 8)	intron (NM_015343, intron 2 of 8)	1719	NM_001143775	23399		NM_015343	ENSG00000175826	CTDNEP1	DULLARD|HSA011916|NET56	CTD nuclear envelope phosphatase 1	protein-coding
188903	chr5	160105771	160105930	+	0	NA	intron (NM_001349734, intron 2 of 4)	intron (NM_001349734, intron 2 of 4)	13600	NR_146216	114825		NM_052927	ENSG00000170234	PWWP2A	MST101	PWWP domain containing 2A	protein-coding
226005	chr9	41356001	41357300	+	0	NA	Intergenic	TAR1|Satellite|telo	-2212	NR_148348	107984035		NR_148348		LOC107984035	-	uncharacterized LOC107984035	ncRNA
185988	chr5	133467021	133467930	+	0	NA	intron (NM_015082, intron 3 of 15)	L2b|LINE|L2	-39769	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
18588	chr1	165403751	165404130	+	0	NA	intron (NM_006917, intron 9 of 9)	intron (NM_006917, intron 9 of 9)	21044	NM_001256571	6258		NM_006917	ENSG00000143171	RXRG	NR2B3|RXR-gamma|RXRC|RXRgamma	retinoid X receptor gamma	protein-coding
176497	chr4	94170601	94171000	+	0	NA	intron (NR_125922, intron 1 of 8)	LTR12C|LTR|ERV1	36756	NR_125922	101929210		NR_125922	ENSG00000246541	SMARCAD1-DT	-	SMARCAD1 divergent transcript	ncRNA
180355	chr5	6745321	6745950	+	0	NA	intron (NM_001171805, intron 6 of 12)	intron (NM_001171805, intron 6 of 12)	32203	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
46465	chr11	128290021	128291000	+	0	NA	Intergenic	Intergenic	81744	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
237023	chrX	102658751	102659050	+	0	NA	3' UTR (NM_001099410, exon 4 of 4)	3' UTR (NM_001099410, exon 4 of 4)	-1083	NR_146585	100528062		NM_001199818	ENSG00000286237	ARMCX5-GPRASP2	ARMCX5-GPRASP2-BHLHB9-LINC00630|GPRASP3|bHLHb9|p60TRP	ARMCX5-GPRASP2 readthrough	protein-coding
107570	chr18	48831971	48832330	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	110657	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
101158	chr17	65062251	65062550	+	0	NA	Intergenic	MARNA|DNA|TcMar-Mariner	-5660	NM_006572	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
217071	chr8	23474121	23474980	+	0	NA	Intergenic	L2|LINE|L2	-16819	NM_001128930	9583		NM_004901	ENSG00000197217	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
168921	chr3	152349171	152349530	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-8360	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
61041	chr13	48232321	48234330	+	0	NA	5' UTR (NM_021999, exon 1 of 6)	5' UTR (NM_021999, exon 1 of 6)	119	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
65049	chr14	39231471	39232080	+	0	NA	Intergenic	Intergenic	-2140	NM_001329214	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
169231	chr3	157137101	157138350	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-14723	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
226884	chr9	78235401	78236800	+	0	NA	promoter-TSS (NM_001330693)	promoter-TSS (NM_001330693)	25	NM_001330693	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
182053	chr5	55929501	55929900	+	0	NA	Intergenic	Intergenic	65263	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
42096	chr11	67514371	67514530	+	0	NA	Intergenic	L1MC3|LINE|L1	-6288	NM_001271849	10263		NM_005851	ENSG00000167797	CDK2AP2	DOC-1R|DOC1R|p14	cyclin dependent kinase 2 associated protein 2	protein-coding
64076	chr14	22569451	22569550	+	0	NA	intron (NM_001344, intron 2 of 2)	L2b|LINE|L2	-12438	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
14789	chr1	146112801	146113030	+	0	NA	exon (NM_001039703, exon 31 of 86)	exon (NM_001039703, exon 31 of 86)	31889	NM_001302371	100132406		NM_001039703	ENSG00000271425	NBPF10	AB6|AG1|NBPF9	NBPF member 10	protein-coding
46490	chr11	128339701	128340400	+	0	NA	Intergenic	L1MA9|LINE|L1	131284	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
147998	chr20	63028921	63029300	+	0	NA	intron (NR_033370, intron 1 of 4)	CpG	7918	NR_028295	100144596		NM_022099		LINC00029	C20orf51|NCRNA00029	long intergenic non-protein coding RNA 29	ncRNA
67369	chr14	69746121	69746650	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	-20757	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
2364	chr1	9295071	9295730	+	0	NA	intron (NM_025106, intron 1 of 2)	intron (NM_025106, intron 1 of 2)	2506	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
224926	chr9	32906371	32906530	+	0	NA	Intergenic	LTR12D|LTR|ERV1	95126	NM_001195249	54840		NM_017692	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
12652	chr1	109261871	109262450	+	0	NA	intron (NM_001408, intron 5 of 33)	(GT)n|Simple_repeat|Simple_repeat	12621	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
99246	chr17	49703851	49704200	+	0	NA	intron (NM_005827, intron 6 of 8)	intron (NM_005827, intron 6 of 8)	3939	NM_001278784	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
79149	chr16	267021	267480	+	0	NA	intron (NR_104317, intron 12 of 13)	intron (NR_104317, intron 12 of 13)	8694	NM_183337	8786		NM_003834	ENSG00000076344	RGS11	RS11	regulator of G protein signaling 11	protein-coding
64283	chr14	23467651	23467950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1903	NM_015514	25983		NM_015514	ENSG00000129460	NGDN	C14orf120|CANu1|LCP5|NGD|lpd-2	neuroguidin	protein-coding
110679	chr19	2268901	2270200	+	0	NA	promoter-TSS (NM_001301020)	promoter-TSS (NM_001301020)	64	NM_004152	4946		NM_004152	ENSG00000104904	OAZ1	AZ1|AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
223873	chr9	221871	222530	+	0	NA	intron (NM_203447, intron 1 of 47)	AluJo|SINE|Alu	-6450	NR_160804	157983		NM_152569	ENSG00000183784	DOCK8-AS1	C9orf66	DOCK8 antisense RNA 1	ncRNA
74087	chr15	52730051	52730680	+	0	NA	Intergenic	Intergenic	-20550	NM_001385019	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
31964	chr10	100735271	100735850	+	0	NA	5' UTR (NM_001304569, exon 1 of 11)	5' UTR (NM_001304569, exon 1 of 11)	164	NM_001304569	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
148353	chr20	63837621	63838250	+	0	NA	Intergenic	L1MD3|LINE|L1	-6671	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
234776	chrX	23906471	23906630	+	0	NA	intron (NM_024122, intron 1 of 8)	intron (NM_024122, intron 1 of 8)	1388	NM_024122	79135		NM_024122	ENSG00000184831	APOO	FAM121B|MIC26|MICOS26|Mic23|My025	apolipoprotein O	protein-coding
102123	chr17	75044101	75044700	+	0	NA	intron (NM_001003785, intron 1 of 4)	AluYb8|SINE|Alu	2569	NM_006356	10476		NM_006356	ENSG00000167863	ATP5PD	APT5H|ATP5H|ATPQ	ATP synthase peripheral stalk subunit d	protein-coding
143211	chr20	24960201	24962430	+	0	NA	Intergenic	Intergenic	12046	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
11236	chr1	88892641	88893650	+	0	NA	Intergenic	AluY|SINE|Alu	-1578	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
206862	chr7	37446251	37446650	+	0	NA	intron (NM_001206480, intron 1 of 21)	L2a|LINE|L2	2502	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
181028	chr5	35877801	35878330	+	0	NA	non-coding (NR_120485, exon 6 of 6)	non-coding (NR_120485, exon 6 of 6)	21174	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
154302	chr22	31943701	31946280	+	0	NA	intron (NM_003405, intron 1 of 1)	CpG	372	NR_126507	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
195513	chr6	37205051	37205350	+	0	NA	Intergenic	Intergenic	35048	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
131375	chr2	96240701	96241230	+	0	NA	intron (NR_046322, intron 3 of 3)	intron (NR_046322, intron 3 of 3)	25032	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
60976	chr13	46655371	46656130	+	0	NA	intron (NM_015116, intron 2 of 18)	intron (NM_015116, intron 2 of 18)	102580	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
85717	chr16	56628671	56628980	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	3044	NM_175617	4493		NM_175617	ENSG00000169715	MT1E	MT-1E|MT-IE|MT1|MTD	metallothionein 1E	protein-coding
131840	chr2	98666601	98667300	+	0	NA	intron (NM_012214, intron 4 of 15)	THE1B|LTR|ERVL-MaLR	-3477	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
233483	chr9	137818551	137819000	+	0	NA	intron (NM_024757, intron 25 of 26)	CpG	-19644	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	ncRNA
59509	chr13	26972021	26972680	+	0	NA	Intergenic	Intergenic	-153183	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
51622	chr12	52928421	52928500	+	0	NA	intron (NM_001256293, intron 1 of 8)	L2|LINE|L2	-1991	NM_001256282	3856		NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
160434	chr3	28326321	28327280	+	0	NA	intron (NM_022461, intron 7 of 7)	intron (NM_022461, intron 7 of 7)	-21921	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
29242	chr10	69099301	69099780	+	0	NA	intron (NM_002727, intron 2 of 2)	AluJo|SINE|Alu	11437	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
176511	chr4	94583951	94584330	+	0	NA	intron (NM_001011516, intron 6 of 9)	intron (NM_001011516, intron 6 of 9)	132198	NR_046186	10611		NM_006457	ENSG00000163110	PDLIM5	ENH|ENH1|L9|LIM	PDZ and LIM domain 5	protein-coding
229869	chr9	126483771	126484100	+	0	NA	intron (NM_033446, intron 8 of 9)	intron (NM_033446, intron 8 of 9)	-73431	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
8621	chr1	41672121	41672630	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-187692	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
176836	chr4	102573871	102574980	+	0	NA	intron (NM_001382625, intron 7 of 24)	L1MEc|LINE|L1	-71939	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
175364	chr4	70613301	70613500	+	0	NA	Intergenic	Intergenic	-15344	NM_031889	10117		NM_031889	ENSG00000132464	ENAM	ADAI|AI1C|AIH2	enamelin	protein-coding
137344	chr2	196144001	196144940	+	0	NA	intron (NM_004226, intron 4 of 7)	AluY|SINE|Alu	27108	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
236474	chrX	71615371	71616130	+	0	NA	TTS (NM_001142797)	TTS (NM_001142797)	2761	NM_001142797	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
70987	chr14	104713801	104714000	+	0	NA	intron (NM_022489, intron 20 of 22)	intron (NM_022489, intron 20 of 22)	-10329	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
2893	chr1	11655901	11656100	+	0	NA	non-coding (NR_130909, exon 2 of 5)	non-coding (NR_130909, exon 2 of 5)	1123	NM_033182	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
191508	chr6	11277371	11278730	+	0	NA	intron (NM_001142393, intron 2 of 7)	LTR33|LTR|ERVL	-45368	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
103414	chr17	78213991	78215280	+	0	NA	intron (NM_001168, intron 1 of 3)	intron (NM_001168, intron 1 of 3)	382	NM_001168	332		NM_001168	ENSG00000089685	BIRC5	API4|EPR-1	baculoviral IAP repeat containing 5	protein-coding
153210	chr22	23894901	23896280	+	0	NA	TTS (NM_002415)	TTS (NM_002415)	1207	NM_002415	4282		NM_002415	ENSG00000240972	MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor	protein-coding
113290	chr19	8552951	8553250	+	0	NA	intron (NM_012335, intron 6 of 27)	intron (NM_012335, intron 6 of 27)	24342	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
83444	chr16	27315181	27316380	+	0	NA	intron (NM_001257997, intron 1 of 9)	intron (NM_001257997, intron 1 of 9)	1806	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
38032	chr11	35146821	35147550	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	8014	NM_001001391	960		NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECM-III|ECMR-III|H-CAM|HCELL|HUTCH-1|HUTCH-I|Hermes-1|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (IN blood group)	protein-coding
104592	chr17	81399021	81399330	+	0	NA	intron (NM_001377448, intron 1 of 27)	CpG-11870	1603	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
229735	chr9	124882501	124883180	+	0	NA	intron (NM_002077, intron 19 of 22)	intron (NM_002077, intron 19 of 22)	20710	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
49607	chr12	27534151	27534830	+	0	NA	intron (NM_177444, intron 1 of 28)	intron (NM_177444, intron 1 of 28)	10284	NM_177444	8496		NM_003622	ENSG00000110841	PPFIBP1	L2|NEDSMBA|SGT2|hSGT2|hSgt2p	PPFIA binding protein 1	protein-coding
85925	chr16	57097571	57098250	+	0	NA	intron (NM_152727, intron 1 of 15)	intron (NM_152727, intron 1 of 15)	5327	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
236102	chrX	56812471	56814300	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-75801	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
6883	chr1	31396801	31397000	+	0	NA	Intergenic	MIR|SINE|MIR	-12877	NM_001199038	347735		NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
31328	chr10	92847321	92847600	+	0	NA	promoter-TSS (NM_001319200)	promoter-TSS (NM_001319200)	-995	NM_001319200	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
57181	chr12	121439621	121439880	+	0	NA	intron (NM_001005366, intron 21 of 22)	intron (NM_001005366, intron 21 of 22)	4602	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
225852	chr9	38123571	38123730	+	0	NA	Intergenic	L1MB7|LINE|L1	-54423	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
77711	chr15	85692501	85693800	+	0	NA	intron (NM_007200, intron 16 of 36)	intron (NM_007200, intron 16 of 36)	65575	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
92489	chr17	8869471	8869830	+	0	NA	Intergenic	Intergenic	-1973	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
203430	chr7	346421	347180	+	0	NA	Intergenic	CpG	-32625	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
119986	chr19	41908971	41909880	+	0	NA	exon (NM_001365103, exon 4 of 6)	exon (NM_001365103, exon 4 of 6)	19024	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
6420	chr1	28086221	28086730	+	0	NA	intron (NR_104214, intron 1 of 16)	AluJr4|SINE|Alu	2135	NM_001282560	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
57888	chr12	123434871	123435480	+	0	NA	intron (NM_145058, intron 1 of 3)	AluSz|SINE|Alu	1558	NR_130703	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
129107	chr2	65128501	65128700	+	0	NA	intron (NM_004161, intron 1 of 5)	intron (NM_004161, intron 1 of 5)	1506	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
20876	chr1	202134851	202136000	+	0	NA	intron (NM_001256129, intron 4 of 5)	intron (NM_001256129, intron 4 of 5)	9312	NM_138795	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
138451	chr2	206165151	206165250	+	0	NA	Intergenic	L1ME4b|LINE|L1	2972	NR_002590	619569		NR_002590	ENSG00000207406	SNORA41	ACA41|SNORA41A	small nucleolar RNA, H/ACA box 41	snoRNA
50125	chr12	45214951	45217280	+	0	NA	promoter-TSS (NM_001025356)	promoter-TSS (NM_001025356)	20	NM_001204803	196527		NM_001025356	ENSG00000177119	ANO6	BDPLT7|SCTS|TMEM16F	anoctamin 6	protein-coding
199200	chr6	111784471	111785250	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-24943	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
153037	chr22	23257021	23257480	+	0	NA	intron (NM_021574, intron 2 of 21)	intron (NM_021574, intron 2 of 21)	-5517	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
182359	chr5	59893971	59894150	+	0	NA	promoter-TSS (NM_001104631)	promoter-TSS (NM_001104631)	-334	NM_001104631	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
76519	chr15	75029171	75029930	+	0	NA	intron (NM_001301103, intron 2 of 3)	intron (NM_001301103, intron 2 of 3)	5960	NM_001301103	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
107243	chr18	37783951	37784050	+	0	NA	Intergenic	Intergenic	126865	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
116128	chr19	17329871	17330030	+	0	NA	intron (NM_020959, intron 11 of 17)	intron (NM_020959, intron 11 of 17)	4905	NM_020959	57719		NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
183267	chr5	76451971	76452280	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	48840	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
36886	chr11	10743701	10744580	+	0	NA	Intergenic	Intergenic	-7106	NM_001346279	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
237329	chrX	118499751	118500050	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	3991	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
230741	chr9	128877971	128878130	+	0	NA	intron (NM_001352995, intron 1 of 14)	MIR3|SINE|MIR	3900	NM_004059	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
107327	chr18	45665971	45666150	+	0	NA	intron (NM_001242692, intron 12 of 20)	intron (NM_001242692, intron 12 of 20)	50584	NM_007163	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
199081	chr6	111659101	111659300	+	0	NA	Intergenic	Intergenic	-52926	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
148059	chr20	63254821	63255450	+	0	NA	promoter-TSS (NM_152864)	promoter-TSS (NM_152864)	-672	NM_152864	128414		NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	sodium/potassium transporting ATPase interacting 4	protein-coding
172973	chr4	3954371	3957150	+	0	NA	promoter-TSS (NR_130740)	promoter-TSS (NR_130740)	-332	NR_130740	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
144919	chr20	36972351	36973030	+	0	NA	Intergenic	AluSz6|SINE|Alu	-20982	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
238275	chrX	149467351	149467680	+	0	NA	Intergenic	Intergenic	37791	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
43031	chr11	74009871	74010030	+	0	NA	promoter-TSS (NM_003356)	promoter-TSS (NM_003356)	-713	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
227638	chr9	92948571	92948730	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	1127	NM_001083536	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
13166	chr1	111768701	111768900	+	0	NA	TTS (NM_007204)	TTS (NM_007204)	12899	NM_007204	11218		NM_007204	ENSG00000064703	DDX20	DP103|GEMIN3	DEAD-box helicase 20	protein-coding
147966	chr20	62976571	62976730	+	0	NA	Intergenic	AluJo|SINE|Alu	23941	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
90872	chr17	2377421	2378330	+	0	NA	exon (NM_001098509, exon 21 of 23)	exon (NM_001098509, exon 21 of 23)	23185	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
112675	chr19	7019271	7019430	+	0	NA	exon (NM_001364674, exon 2 of 2)	exon (NM_001364674, exon 2 of 2)	2081	NM_001364674	729458		NM_001364674	ENSG00000196589	MBD3L2B	-	methyl-CpG binding domain protein 3 like 2B	protein-coding
51275	chr12	51174621	51174930	+	0	NA	Intergenic	Intergenic	-1640	NM_001173452	7024		NM_005653	ENSG00000135457	TFCP2	LBP1C|LSF|LSF1D|SEF|TFCP2C	transcription factor CP2	protein-coding
68468	chr14	87805271	87805430	+	0	NA	Intergenic	MER90a|LTR|ERV1	-150056	NR_146551	105370611		NR_146551	ENSG00000258770	LINC02330	-	long intergenic non-protein coding RNA 2330	ncRNA
166956	chr3	125350651	125351100	+	0	NA	intron (NM_001348427, intron 1 of 9)	L1MB1|LINE|L1	6405	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
107821	chr18	54129471	54129700	+	0	NA	Intergenic	LTR56|LTR|ERV1	92827	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
230412	chr9	128119801	128120700	+	0	NA	TTS (NM_198938)	TTS (NM_198938)	-1516	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
41713	chr11	66651151	66651950	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluY|SINE|Alu	12847	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
68100	chr14	75300501	75300900	+	0	NA	Intergenic	AluSx3|SINE|Alu	6296	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
153804	chr22	29689821	29690100	+	0	NA	intron (NM_181832, intron 16 of 16)	intron (NM_181832, intron 16 of 16)	-30043	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
140911	chr2	237703951	237704930	+	0	NA	intron (NM_001137551, intron 1 of 11)	AluSx1|SINE|Alu	12235	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
26455	chr10	17506021	17506480	+	0	NA	Intergenic	AluSz6|SINE|Alu	-51655	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
192097	chr6	16697721	16698400	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	62124	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
469	chr1	1149671	1149830	+	0	NA	Intergenic	Intergenic	12733	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
6353	chr1	27775471	27775900	+	0	NA	intron (NM_177424, intron 1 of 8)	L2c|LINE|L2	2466	NM_177424	23673		NM_177424	ENSG00000117758	STX12	STX13|STX14	syntaxin 12	protein-coding
75052	chr15	64160451	64160750	+	0	NA	intron (NM_000942, intron 2 of 4)	intron (NM_000942, intron 2 of 4)	2422	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
166606	chr3	119293521	119295680	+	0	NA	5' UTR (NM_020754, exon 1 of 12)	5' UTR (NM_020754, exon 1 of 12)	217	NM_020754	57514		NM_020754	ENSG00000031081	ARHGAP31	AOS|AOS1|CDGAP	Rho GTPase activating protein 31	protein-coding
51755	chr12	53286471	53286830	+	0	NA	exon (NM_012291, exon 18 of 31)	exon (NM_012291, exon 18 of 31)	-8801	NM_145897	5204		NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
48910	chr12	12582551	12583050	+	0	NA	Intergenic	Intergenic	-19937	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
32344	chr10	102268971	102269130	+	0	NA	intron (NR_165087, intron 3 of 38)	intron (NR_165087, intron 3 of 38)	23518	NR_165088	8729		NM_004193	ENSG00000107862	GBF1	ARF1GEF|CMT2GG|CMTDI2|CMTDIA	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
157053	chr22	42583371	42583530	+	0	NA	TTS (NM_178136)	TTS (NM_178136)	-1439	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
9479	chr1	50976671	50978500	+	0	NA	Intergenic	Intergenic	7340	NM_078626	1031		NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	cyclin dependent kinase inhibitor 2C	protein-coding
124038	chr19	55500671	55501030	+	0	NA	intron (NM_001144950, intron 11 of 13)	intron (NM_001144950, intron 11 of 13)	12414	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
114358	chr19	12332341	12332800	+	0	NA	intron (NM_001363608, intron 1 of 4)	AluSx|SINE|Alu	1063	NM_001363608	147837		NM_145276	ENSG00000188868	ZNF563	-	zinc finger protein 563	protein-coding
150910	chr21	44208071	44208530	+	0	NA	Intergenic	Intergenic	32643	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
110990	chr19	3031971	3032130	+	0	NA	intron (NM_001144761, intron 2 of 19)	AluSx1|SINE|Alu	-2436	NM_001144762	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
226011	chr9	41645621	41646330	+	0	NA	Intergenic	SST1|Satellite|centr	-1699	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
218845	chr8	59737751	59737850	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	543600	NM_001321837	767		NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
84004	chr16	29454701	29455530	+	0	NA	promoter-TSS (NM_001320622)	promoter-TSS (NM_001320622)	24	NR_037609	100526831		NR_037609	ENSG00000260280	SLX1B-SULT1A4	-	SLX1B-SULT1A4 readthrough (NMD candidate)	ncRNA
185451	chr5	131261601	131261880	+	0	NA	Intergenic	AluJb|SINE|Alu	-2313	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
75544	chr15	66751501	66751900	+	0	NA	intron (NR_027654, intron 4 of 4)	intron (NR_027654, intron 4 of 4)	49464	NR_027654	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
69152	chr14	92568351	92570530	+	0	NA	intron (NM_024832, intron 2 of 9)	MIRc|SINE|MIR	-6794	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
97606	chr17	44121921	44122300	+	0	NA	intron (NM_005474, intron 1 of 26)	intron (NM_005474, intron 1 of 26)	1531	NM_001015053	10014		NM_005474	ENSG00000108840	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
59421	chr13	25305271	25305630	+	0	NA	intron (NM_001008564, intron 1 of 14)	AluJb|SINE|Alu	3825	NM_001008564	9818		NM_014089	ENSG00000139496	NUP58	NUP45|NUPL1|PRO2463	nucleoporin 58	protein-coding
234749	chrX	23075621	23075700	+	0	NA	intron (NR_073010, intron 2 of 11)	intron (NR_073010, intron 2 of 11)	75700	NM_182699	168400		NM_182699	ENSG00000184735	DDX53	CAGE|CT26	DEAD-box helicase 53	protein-coding
218370	chr8	43166971	43167500	+	0	NA	intron (NM_001363228, intron 5 of 15)	Tigger1|DNA|TcMar-Tigger	26771	NM_001363228	138050		NM_025070	ENSG00000165102	HGSNAT	HGNAT|MPS3C|RP73|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
104747	chr17	81681351	81681850	+	0	NA	non-coding (NR_138059, exon 3 of 3)	non-coding (NR_138059, exon 3 of 3)	2113	NM_001329609	339231		NM_001040025	ENSG00000214087	ARL16	-	ADP ribosylation factor like GTPase 16	protein-coding
179265	chr4	176195051	176196180	+	0	NA	promoter-TSS (NM_144644)	promoter-TSS (NM_144644)	-30	NM_144644	132851		NM_144644	ENSG00000150628	SPATA4	CFAP178|FAP178|SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
18043	chr1	160615801	160616200	+	0	NA	intron (NR_104400, intron 3 of 4)	MLT1C|LTR|ERVL-MaLR	31044	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
89061	chr16	88450051	88450150	+	0	NA	Intergenic	Intergenic	-3180	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
119578	chr19	40674401	40674880	+	0	NA	intron (NM_004756, intron 7 of 9)	intron (NM_004756, intron 7 of 9)	15524	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
210140	chr7	98224521	98224780	+	0	NA	intron (NM_015395, intron 19 of 25)	intron (NM_015395, intron 19 of 25)	13211	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
165005	chr3	71372371	71373530	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-68179	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
109911	chr19	1288951	1290030	+	0	NA	intron (NM_001405, intron 1 of 3)	intron (NM_001405, intron 1 of 3)	3617	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
110646	chr19	2235571	2237750	+	0	NA	promoter-TSS (NR_106847)	promoter-TSS (NR_106847)	-164	NM_007165	8175		NM_007165	ENSG00000104897	SF3A2	PRP11|PRPF11|SAP62|SF3a66	splicing factor 3a subunit 2	protein-coding
164403	chr3	58470901	58471780	+	0	NA	Intergenic	Intergenic	-20756	NM_001128214	200845		NM_153331	ENSG00000168301	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
35827	chr11	2268771	2269600	+	0	NA	intron (NM_005170, intron 1 of 1)	CpG	1403	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
197199	chr6	63590901	63591300	+	0	NA	Intergenic	AluSx|SINE|Alu	18620	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
42326	chr11	68481971	68482130	+	0	NA	intron (NM_001352362, intron 2 of 24)	MIRb|SINE|MIR	21298	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
111543	chr19	4035471	4036030	+	0	NA	intron (NM_015897, intron 9 of 10)	intron (NM_015897, intron 9 of 10)	28014	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
55104	chr12	98502911	98505050	+	0	NA	promoter-TSS (NR_038383)	promoter-TSS (NR_038383)	-125	NR_038383	643770		NR_038383	ENSG00000245017	LINC02453	-	long intergenic non-protein coding RNA 2453	ncRNA
88217	chr16	81842751	81843150	+	0	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	63659	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
12725	chr1	109533921	109534180	+	0	NA	Intergenic	AluJb|SINE|Alu	-5822	NM_031936	83873		NM_031936	ENSG00000156097	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
197042	chr6	53358401	53360000	+	0	NA	Intergenic	CpG	-10021	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
80904	chr16	3731071	3731750	+	0	NA	exon (NM_001079846, exon 29 of 30)	exon (NM_001079846, exon 29 of 30)	-13886	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
120463	chr19	44689241	44690000	+	0	NA	Intergenic	L2b|LINE|L2	-9531	NM_001039213	388551		NM_001039213	ENSG00000213892	CEACAM16	CEAL2|DFNA4B|DFNB113	CEA cell adhesion molecule 16, tectorial membrane component	protein-coding
147612	chr20	62129671	62130330	+	0	NA	intron (NM_144703, intron 4 of 8)	intron (NM_144703, intron 4 of 8)	7525	NM_144703	149986		NM_014054	ENSG00000149657	LSM14B	C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3	LSM family member 14B	protein-coding
82619	chr16	18922671	18923380	+	0	NA	intron (NM_015092, intron 1 of 62)	AluJb|SINE|Alu	3383	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
27602	chr10	32887471	32887830	+	0	NA	Intergenic	Intergenic	13822	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
26937	chr10	26485901	26486300	+	0	NA	intron (NM_019043, intron 2 of 14)	A-rich|Low_complexity|Low_complexity	47759	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
180967	chr5	35759151	35759250	+	0	NA	intron (NM_024867, intron 24 of 36)	intron (NM_024867, intron 24 of 36)	-97691	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
95165	chr17	35143451	35143700	+	0	NA	Intergenic	L2|LINE|L2	-1272	NM_018096	54475		NM_018096	ENSG00000073536	NLE1	NLE|Rsa4	notchless homolog 1	protein-coding
197924	chr6	89596171	89596530	+	0	NA	intron (NM_014942, intron 3 of 15)	intron (NM_014942, intron 3 of 15)	29512	NM_001242814	22881		NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
225780	chr9	37456821	37457130	+	0	NA	intron (NM_014872, intron 1 of 1)	Tigger15a|DNA|TcMar-Tigger	8475	NM_014872	9925		NM_014872	ENSG00000168795	ZBTB5	-	zinc finger and BTB domain containing 5	protein-coding
47247	chr12	1130321	1130780	+	0	NA	intron (NM_178039, intron 6 of 17)	intron (NM_178039, intron 6 of 17)	102802	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
111270	chr19	3542901	3544100	+	0	NA	TTS (NM_001287529)	TTS (NM_001287529)	4343	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
550	chr1	1243371	1244100	+	0	NA	intron (NM_001014980, intron 4 of 7)	intron (NM_001014980, intron 4 of 7)	2987	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
61610	chr13	73602401	73602600	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	38256	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
194118	chr6	31960771	31960930	+	0	NA	intron (NM_006929, intron 6 of 27).3	MER91B|DNA|hAT-Tip100	1675	NM_006929	6499		NM_006929	ENSG00000204351	SKIC2	170A|DDX13|HLP|SKI2|SKI2W|SKIV2|SKIV2L|SKIV2L1|THES2	SKI2 subunit of superkiller complex	protein-coding
66837	chr14	64894871	64895430	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-15243	NM_001355437	6710		NM_000347	ENSG00000070182	SPTB	EL3|HS2|HSPTB1|SPH2	spectrin beta, erythrocytic	protein-coding
134724	chr2	144523001	144523420	+	0	NA	TTS (NR_136320)	TTS (NR_136320)	1234	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
95190	chr17	35212501	35213280	+	0	NA	Intergenic	Intergenic	-18497	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
305	chr1	968201	968600	+	0	NA	intron (NM_001160184, intron 2 of 14)	intron (NM_001160184, intron 2 of 14)	1918	NM_001160184	84069		NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
133395	chr2	118225131	118225680	+	0	NA	Intergenic	Intergenic	-39019	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
128595	chr2	60948921	60949380	+	0	NA	intron (NM_001322127, intron 14 of 16)	intron (NM_001322127, intron 14 of 16)	67576	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
12917	chr1	110637501	110638330	+	0	NA	Intergenic	Intergenic	-6475	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
136426	chr2	176473101	176473530	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	127737	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
96971	chr17	42251521	42252330	+	0	NA	intron (NM_012448, intron 1 of 18)	AluSx3|SINE|Alu	24466	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
1249	chr1	2293951	2294250	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	58561	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
36201	chr11	3420551	3420980	+	0	NA	Intergenic	L2a|LINE|L2	-28850	NR_044999	10821		NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
105348	chr17	82634671	82635430	+	0	NA	intron (NM_019613, intron 2 of 9)	L1MB2|LINE|L1	13394	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
115757	chr19	16323521	16325700	+	0	NA	promoter-TSS (NM_016270)	promoter-TSS (NM_016270)	-216	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
96302	chr17	39955521	39956180	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-7154	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
183139	chr5	74977601	74977800	+	0	NA	Intergenic	L1ME1|LINE|L1	74858	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
87940	chr16	79412021	79412480	+	0	NA	Intergenic	Intergenic	188487	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
134623	chr2	144411671	144412030	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-78781	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
72195	chr15	30103421	30104380	+	0	NA	non-coding (NR_026859, exon 1 of 5)	non-coding (NR_026859, exon 1 of 5)	168	NR_026859	89837		NR_026859	ENSG00000290997	ULK4P3	D-X|FAM7A3	ULK4 pseudogene 3	pseudo
221893	chr8	128575351	128575450	+	0	NA	Intergenic	Intergenic	-10721	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
79347	chr16	592001	592530	+	0	NA	intron (NM_001172664, intron 2 of 6)	intron (NM_001172664, intron 2 of 6)	2188	NM_001172665	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
102770	chr17	76289301	76289900	+	0	NA	intron (NM_032134, intron 5 of 18)	MIRc|SINE|MIR	18080	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
199814	chr6	127515401	127516920	+	0	NA	exon (NM_001012279, exon 2 of 12)	exon (NM_001012279, exon 2 of 12)	2864	NM_001012279	387104		NM_001012279	ENSG00000214338	MTCL3	C6orf174|SOGA3|dJ403A15.3	MTCL family member 3	protein-coding
67167	chr14	68792001	68793900	+	0	NA	exon (NM_001244701, exon 2 of 3)	exon (NM_001244701, exon 2 of 3)	117	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
178489	chr4	150078221	150078700	+	0	NA	promoter-TSS (NM_001040260)	promoter-TSS (NM_001040260)	15	NR_036614	166614		NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
31098	chr10	89256071	89256230	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-4111	NM_001288979	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
114671	chr19	13087701	13088100	+	0	NA	intron (NM_001271044, intron 8 of 9)	CpG	14958	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
30796	chr10	84374421	84375250	+	0	NA	TTS (NM_001284241)	TTS (NM_001284241)	46246	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
72160	chr15	29112801	29113000	+	0	NA	intron (NM_001353793, intron 11 of 12).2	L1MB3|LINE|L1	42242	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
66014	chr14	58260071	58260430	+	0	NA	intron (NM_152132, intron 5 of 10)	MER2|DNA|TcMar-Tigger	15407	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
841	chr1	1597201	1598050	+	0	NA	TTS (NM_001242659)	TTS (NM_001242659)	-1808	NR_147951	105378586		NR_147951		LOC105378586	-	uncharacterized LOC105378586	ncRNA
161842	chr3	45693051	45693350	+	0	NA	intron (NM_001319073, intron 2 of 20)	Tigger3a|DNA|TcMar-Tigger	3804	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
4154	chr1	19360221	19360680	+	0	NA	intron (NM_001206540, intron 4 of 9)	intron (NM_001206540, intron 4 of 9)	48124	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
96748	chr17	41697151	41697800	+	0	NA	Intergenic	Intergenic	8590	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
72408	chr15	31405171	31405830	+	0	NA	intron (NM_001302461, intron 1 of 1).3	MLT1A0|LTR|ERVL-MaLR	78665	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
94425	chr17	29132001	29132200	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	8289	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
94373	chr17	28924701	28924900	+	0	NA	intron (NM_020889, intron 3 of 8)	AluSx|SINE|Alu	-1475	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
78072	chr15	90199901	90200200	+	0	NA	intron (NM_001324031, intron 1 of 14)	L3|LINE|CR1	-1280	NM_198925	10509		NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
126300	chr2	27250021	27250630	+	0	NA	Intergenic	Intergenic	12722	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
26306	chr10	14996001	14996400	+	0	NA	Intergenic	SATR1|Satellite|Satellite	36812	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
157359	chr22	44694551	44694850	+	0	NA	intron (NM_001198721, intron 2 of 9)	MIR|SINE|MIR	-7498	NM_181334	553158		NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
124974	chr2	8838501	8838700	+	0	NA	promoter-TSS (NM_001348736)	promoter-TSS (NM_001348736)	-987	NM_001348738	57498		NM_020738	ENSG00000134313	KIDINS220	ARMS|SINO|VENARG	kinase D interacting substrate 220	protein-coding
189326	chr5	172161551	172163230	+	0	NA	intron (NM_005990, intron 1 of 18)	intron (NM_005990, intron 1 of 18)	25834	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
218527	chr8	53844451	53845050	+	0	NA	Intergenic	Intergenic	-1439	NM_213619	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
171419	chr3	196220971	196221330	+	0	NA	intron (NM_152672, intron 2 of 8)	intron (NM_152672, intron 2 of 8)	4616	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
8938	chr1	44036451	44037100	+	0	NA	Intergenic	Intergenic	-5313	NM_001328630	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
84192	chr16	29849721	29850480	+	0	NA	Intergenic	AluSg|SINE|Alu	13126	NM_006319	10423		NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
184581	chr5	102857151	102857650	+	0	NA	intron (NM_001364582, intron 1 of 24)	MER102c|DNA|hAT-Charlie	-8423	NM_138821	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
48635	chr12	10391771	10392000	+	0	NA	5' UTR (NM_001199805, exon 6 of 13)	5' UTR (NM_001199805, exon 6 of 13)	-1844	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
174744	chr4	44760121	44760480	+	0	NA	Intergenic	Intergenic	-33666	NR_073095	132789		NM_138335	ENSG00000163281	GNPDA2	GNP2|SB52	glucosamine-6-phosphate deaminase 2	protein-coding
69911	chr14	99510121	99511030	+	0	NA	exon (NM_001099402, exon 11 of 11)	exon (NM_001099402, exon 11 of 11)	29166	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
50236	chr12	46238371	46238780	+	0	NA	intron (NM_001278387, intron 4 of 17)	intron (NM_001278387, intron 4 of 17)	27941	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
49808	chr12	31970471	31970630	+	0	NA	intron (NM_018169, intron 3 of 5)	LTR44|LTR|ERV1	11135	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
30261	chr10	75122871	75123450	+	0	NA	intron (NM_144660, intron 1 of 4)	(CCCAC)n|Simple_repeat|Simple_repeat	11504	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
195964	chr6	41951601	41952000	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx1|SINE|Alu	-9952	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
90362	chr17	1232401	1232800	+	0	NA	Intergenic	AluJb|SINE|Alu	-2878	NM_001322841	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
127270	chr2	38714351	38714650	+	0	NA	intron (NM_138801, intron 4 of 6)	AluSz|SINE|Alu	36861	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
157585	chr22	45994721	45995750	+	0	NA	Intergenic	Intergenic	-11381	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
131430	chr2	96291051	96291550	+	0	NA	intron (NM_014014, intron 18 of 44)	intron (NM_014014, intron 18 of 44)	14246	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
197177	chr6	63441621	63441900	+	0	NA	Intergenic	Intergenic	-74680	NM_001385255	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
126965	chr2	36241851	36241950	+	0	NA	Intergenic	Intergenic	113670	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
49101	chr12	14664321	14664850	+	0	NA	intron (NM_004963, intron 10 of 26)	intron (NM_004963, intron 10 of 26)	32014	NM_004963	2984		NM_004963	ENSG00000070019	GUCY2C	DIAR6|GC-C|GCC|GUC2C|HSER|MECIL|MUCIL|STAR	guanylate cyclase 2C	protein-coding
81886	chr16	11683471	11683630	+	0	NA	intron (NR_136674, intron 8 of 8)	AluJo|SINE|Alu	15095	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
10622	chr1	68501601	68501800	+	0	NA	intron (NR_110671, intron 1 of 2)	L1PB1|LINE|L1	-4618	NM_001114120	55635		NM_017779	ENSG00000024526	DEPDC1	DEP.8|DEPDC1-V2|DEPDC1A|SDP35	DEP domain containing 1	protein-coding
160844	chr3	33088071	33088780	+	0	NA	intron (NM_001317040, intron 1 of 16)	L1MB2|LINE|L1	8407	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
57687	chr12	122843251	122843350	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	7843	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
27979	chr10	42781951	42783350	+	0	NA	promoter-TSS (NM_014753)	promoter-TSS (NM_014753)	-145	NM_014753	9790		NM_014753	ENSG00000165733	BMS1	ACC|BMS1L	BMS1 ribosome biogenesis factor	protein-coding
44164	chr11	96214371	96214530	+	0	NA	intron (NM_032427, intron 1 of 4)	MIRb|SINE|MIR	-126988	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
183248	chr5	76406771	76407350	+	0	NA	intron (NM_006633, intron 1 of 35)	AluJb|SINE|Alu	3775	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
191621	chr6	12232471	12232850	+	0	NA	Intergenic	Intergenic	-57701	NM_001955	1906		NM_001955	ENSG00000078401	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
6298	chr1	27619651	27619750	+	0	NA	intron (NM_001042747, intron 5 of 12)	intron (NM_001042747, intron 5 of 12)	6540	NM_001042747	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
176446	chr4	89289751	89290150	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	17850	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
35446	chr11	1451901	1452300	+	0	NA	intron (NM_001256630, intron 15 of 19)	intron (NM_001256630, intron 15 of 19)	28786	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
26548	chr10	21581351	21581650	+	0	NA	intron (NR_136736, intron 4 of 25)	Tigger3c|DNA|TcMar-Tigger	47268	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
82311	chr16	15659071	15660150	+	0	NA	intron (NM_017668, intron 1 of 8)	AluSx|SINE|Alu	9365	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
34479	chr10	132511271	132511430	+	0	NA	intron (NR_158224, intron 3 of 3)	MSTA|LTR|ERVL-MaLR	25573	NR_158224	107984282		NR_158224		LOC107984282	-	uncharacterized LOC107984282	ncRNA
214195	chr7	148535301	148535530	+	0	NA	Intergenic	Intergenic	-55351	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
135101	chr2	157387201	157387600	+	0	NA	Intergenic	L1M1|LINE|L1	-6891	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
45424	chr11	118394801	118395000	+	0	NA	intron (NM_004788, intron 19 of 19)	AluJr4|SINE|Alu	-6489	NR_033759	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
8340	chr1	40185351	40186080	+	0	NA	intron (NM_012421, intron 1 of 7)	AluY|SINE|Alu	24328	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
30592	chr10	80149871	80150630	+	0	NA	TTS (NM_001157)	TTS (NM_001157)	17520	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
99074	chr17	48949451	48949900	+	0	NA	Intergenic	AluSp|SINE|Alu	-4833	NM_001317192	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
116804	chr19	18532271	18533030	+	0	NA	intron (NM_012181, intron 8 of 8)	intron (NM_012181, intron 8 of 8)	-10580	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
114945	chr19	13981851	13982580	+	0	NA	exon (NM_002918, exon 5 of 21)	exon (NM_002918, exon 5 of 21)	24105	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
126851	chr2	31812021	31812450	+	0	NA	Intergenic	Intergenic	-8255	NR_146994	105374449		NR_146994	ENSG00000223647	LINC01946	-	long intergenic non-protein coding RNA 1946	ncRNA
21835	chr1	207344601	207345330	+	0	NA	intron (NM_001114752, intron 10 of 10)	AluSx|SINE|Alu	23287	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
20366	chr1	197924521	197924780	+	0	NA	intron (NM_020204, intron 3 of 4)	intron (NM_020204, intron 3 of 4)	7278	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
22803	chr1	224615601	224617050	+	0	NA	promoter-TSS (NM_001322305)	promoter-TSS (NM_001322305)	8	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
217893	chr8	37880621	37881100	+	0	NA	intron (NM_025151, intron 1 of 4)	intron (NM_025151, intron 1 of 4)	18637	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
71795	chr15	21722751	21723050	+	0	NA	Intergenic	MER70B|LTR|ERVL	-4593	NR_135695	102724760		NR_135695		LOC102724760	-	immunoglobulin heavy variable 1/OR15-1 pseudogene	pseudo
43945	chr11	93612901	93613400	+	0	NA	Intergenic	Intergenic	-48532	NM_033395	85459		NM_033395	ENSG00000166004	CEP295	KIAA1731|SCKL11	centrosomal protein 295	protein-coding
192079	chr6	16660951	16661450	+	0	NA	intron (NM_000332, intron 3 of 8)	L1P1|LINE|L1	98984	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
174643	chr4	40550971	40551330	+	0	NA	intron (NM_001371114, intron 1 of 5)	intron (NM_001371114, intron 1 of 5)	-35165	NM_019027	54502		NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
78963	chr15	101392371	101392530	+	0	NA	intron (NM_138319, intron 8 of 20)	intron (NM_138319, intron 8 of 20)	58013	NR_132373	105371027		NR_132373	ENSG00000259764	PCSK6-AS1	-	PCSK6 antisense RNA 1	ncRNA
194220	chr6	32200321	32200580	+	0	NA	intron (NR_134950, intron 22 of 28).2	AluY|SINE|Alu	-4927	NM_022107	63940		NM_022107	ENSG00000213654	GPSM3	AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1	G protein signaling modulator 3	protein-coding
209065	chr7	74780471	74780630	+	0	NA	intron (NM_000265, intron 4 of 10)	intron (NM_000265, intron 4 of 10)	6588	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
124127	chr19	55673601	55673800	+	0	NA	intron (NM_007279, intron 11 of 11)	intron (NM_007279, intron 11 of 11)	-1495	NM_001321263	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
88709	chr16	85902301	85903550	+	0	NA	promoter-TSS (NM_001363908)	promoter-TSS (NM_001363908)	-90	NM_001363908	3394		NM_002163	ENSG00000140968	IRF8	H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8	interferon regulatory factor 8	protein-coding
55092	chr12	98048951	98049050	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-53552	NR_036189	100422924		NR_036189	ENSG00000263890	MIR4303	-	microRNA 4303	ncRNA
147809	chr20	62651981	62652980	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	9977	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
168558	chr3	147317251	147317350	+	0	NA	Intergenic	L1P2|LINE|L1	75130	NR_040762	84107		NM_032153	ENSG00000174963	ZIC4	-	Zic family member 4	protein-coding
71760	chr15	21107971	21109150	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	105283	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
33150	chr10	112429851	112429950	+	0	NA	TTS (NM_001351085)	TTS (NM_001351085)	17014	NM_022494	64429		NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|DHHC6|ZNF376	zinc finger DHHC-type palmitoyltransferase 6	protein-coding
64244	chr14	23118051	23118700	+	0	NA	intron (NM_001805, intron 1 of 1)	intron (NM_001805, intron 1 of 1)	880	NM_001805	1053		NM_001805	ENSG00000092067	CEBPE	C/EBP-epsilon|CRP1|IMD108|SGD1|c/EBP epsilon	CCAAT enhancer binding protein epsilon	protein-coding
181269	chr5	39266371	39266730	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	4099	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
223091	chr8	143422921	143423780	+	0	NA	Intergenic	Intergenic	5671	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
151039	chr21	44628651	44629150	+	0	NA	TTS (NM_198690)	TTS (NM_198690)	1807	NM_198690	386676		NM_198690	ENSG00000221837	KRTAP10-9	KAP10.9|KAP18.9|KRTAP18-9	keratin associated protein 10-9	protein-coding
86328	chr16	66357501	66357730	+	0	NA	Intergenic	Intergenic	-9076	NM_001795	1003		NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
236285	chrX	66110151	66110430	+	0	NA	Intergenic	Intergenic	-52381	NM_138737	9843		NM_014799	ENSG00000089472	HEPH	CPL	hephaestin	protein-coding
228874	chr9	112386871	112387350	+	0	NA	intron (NR_036651, intron 1 of 9)	L1MC5a|LINE|L1	7002	NM_032303	84263		NM_032303	ENSG00000119471	HSDL2	C9orf99|SDR13C1	hydroxysteroid dehydrogenase like 2	protein-coding
106006	chr18	7950501	7951100	+	0	NA	intron (NM_001378146, intron 2 of 29)	intron (NM_001378146, intron 2 of 29)	3925	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
89303	chr16	88715001	88715200	+	0	NA	TTS (NM_001142864)	TTS (NM_001142864)	1237	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
124292	chr19	57851601	57852630	+	0	NA	intron (NM_001204817, intron 1 of 2)	intron (NM_001204817, intron 1 of 2)	2256	NM_001204817	84914		NM_017961	ENSG00000198466	ZNF587	ZF6	zinc finger protein 587	protein-coding
232790	chr9	136700801	136702150	+	0	NA	Intergenic	CpG	-11097	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
3121	chr1	12384621	12385380	+	0	NA	intron (NM_018156, intron 57 of 68)	intron (NM_018156, intron 57 of 68)	-122246	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
143354	chr20	25865501	25866700	+	0	NA	Intergenic	SST1|Satellite|centr	-12079	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
192373	chr6	24708351	24708700	+	0	NA	intron (NM_030939, intron 4 of 4)	AluJr|SINE|Alu	10629	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
159322	chr3	13018871	13019030	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-31849	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
190075	chr5	177674421	177674830	+	0	NA	Intergenic	AluJr|SINE|Alu	-2348	NR_026921	202181		NR_026921		SIMC1P1	-	SIMC1 pseudogene 1	pseudo
7142	chr1	32210171	32210430	+	0	NA	intron (NM_001099434, intron 1 of 8)	AluSp|SINE|Alu	1206	NM_001099434	149069		NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
42113	chr11	67605201	67605600	+	0	NA	intron (NR_130935, intron 2 of 2)	intron (NR_130935, intron 2 of 2)	1306	NR_130935	100505621		NM_173578	ENSG00000184224	NDUFV1-DT	C11orf72	NDUFV1 divergent transcript	ncRNA
105861	chr18	3066221	3066730	+	0	NA	TTS (NM_003803)	TTS (NM_003803)	-53331	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
189688	chr5	176413371	176413750	+	0	NA	intron (NM_007097, intron 1 of 5)	intron (NM_007097, intron 1 of 5)	-2737	NM_001364126	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
58314	chr12	131046201	131046850	+	0	NA	intron (NM_001330497, intron 14 of 25)	intron (NM_001330497, intron 14 of 25)	-52549	NR_131950	105755954		NR_131950		ADGRD1-AS1	LACAT8	ADGRD1 antisense RNA 1	ncRNA
151333	chr21	45613921	45614300	+	0	NA	Intergenic	Intergenic	20456	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
233158	chr9	137175501	137176000	+	0	NA	exon (NM_013366, exon 11 of 13)	exon (NM_013366, exon 11 of 13)	-3694	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
61935	chr13	78603101	78604230	+	0	NA	promoter-TSS (NM_006237)	promoter-TSS (NM_006237)	-113	NM_006237	5457		NM_006237	ENSG00000152192	POU4F1	ATITHS|BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
62903	chr13	110874471	110875300	+	0	NA	Intergenic	Intergenic	-4577	NR_027701	283487		NM_178514	ENSG00000255874	PRECSIT	C13orf29|LINC00346|NCRNA00346	p53 regulated carcinoma associated Stat3 activating long intergenic non-protein coding transcript	ncRNA
189415	chr5	172805721	172806130	+	0	NA	Intergenic	Intergenic	-28326	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
142962	chr20	19757821	19758480	+	0	NA	promoter-TSS (NM_018993)	promoter-TSS (NM_018993)	-108	NM_001378238	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
46781	chr11	130000401	130000600	+	0	NA	intron (NM_199437, intron 1 of 20)	intron (NM_199437, intron 1 of 20)	-2124	NR_024233	440072		NM_001007543		PRDM10-DT	C11orf37|LINC00167|NCRNA00167	PRDM10 divergent transcript	ncRNA
52155	chr12	54277051	54278400	+	0	NA	intron (NR_157844, intron 1 of 1)	intron (NR_157844, intron 1 of 1)	2397	NM_012117	23468		NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A|HP1alpha	chromobox 5	protein-coding
232461	chr9	136194701	136194900	+	0	NA	Intergenic	Intergenic	6874	NM_001363746	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
10275	chr1	64747771	64748630	+	0	NA	intron (NM_001366165, intron 1 of 11)	intron (NM_001366165, intron 1 of 11)	3125	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
231414	chr9	131122651	131122950	+	0	NA	non-coding (NR_033701, exon 6 of 6)	non-coding (NR_033701, exon 6 of 6)	-2786	NM_005085	8021		NM_005085	ENSG00000126883	NUP214	CAIN|CAN|IIAE9	nucleoporin 214	protein-coding
83483	chr16	27404451	27405080	+	0	NA	intron (NM_181079, intron 2 of 9)	MIRb|SINE|MIR	2591	NM_181078	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
29118	chr10	68348251	68348830	+	0	NA	intron (NM_001330103, intron 16 of 17)	MIR3|SINE|MIR	-15612	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
127543	chr2	42337421	42337980	+	0	NA	intron (NM_001319038, intron 2 of 2)	L1MD2|LINE|L1	22338	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
65310	chr14	50091201	50092000	+	0	NA	intron (NR_131171, intron 1 of 8)	intron (NR_131171, intron 1 of 8)	13443	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
105955	chr18	3995501	3995730	+	0	NA	non-coding (NR_102696, exon 4 of 5)	non-coding (NR_102696, exon 4 of 5)	33262	NR_102696	101410534		NR_102696		DLGAP1-AS4	-	DLGAP1 antisense RNA 4	ncRNA
108413	chr18	69937771	69938130	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	9923	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
67879	chr14	74299851	74299950	+	0	NA	intron (NR_148473, intron 1 of 16)	AluSq|SINE|Alu	3034	NM_020324	5826		NM_005050	ENSG00000119688	ABCD4	ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L	ATP binding cassette subfamily D member 4	protein-coding
129150	chr2	65566871	65567030	+	0	NA	Intergenic	Intergenic	-134351	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
199257	chr6	111849001	111849700	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	23721	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
86964	chr16	68136251	68136880	+	0	NA	intron (NM_173165, intron 3 of 9)	AluJb|SINE|Alu	51195	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
171571	chr3	196968251	196969500	+	0	NA	promoter-TSS (NM_025163)	promoter-TSS (NM_025163)	-42	NM_025163	80235		NM_025163	ENSG00000119227	PIGZ	GPI-MT-IV|PIG-Z|SMP3	phosphatidylinositol glycan anchor biosynthesis class Z	protein-coding
2288	chr1	8957851	8958150	+	0	NA	intron (NM_001215, intron 3 of 7)	intron (NM_001215, intron 3 of 7)	12132	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
144780	chr20	36631501	36631700	+	0	NA	intron (NM_175077, intron 5 of 7)	intron (NM_175077, intron 5 of 7)	14596	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
229656	chr9	124342201	124342400	+	0	NA	intron (NM_001166169, intron 8 of 9)	intron (NM_001166169, intron 8 of 9)	-11173	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
61457	chr13	52127601	52128130	+	0	NA	intron (NM_001365552, intron 1 of 23)	intron (NM_001365552, intron 1 of 23)	-1030	NR_110306	101929657		NR_110306	ENSG00000273523	LOC101929657	-	uncharacterized LOC101929657	ncRNA
203840	chr7	1445821	1446450	+	0	NA	intron (NM_182924, intron 5 of 16)	intron (NM_182924, intron 5 of 16)	13335	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
101483	chr17	67531371	67531530	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-59865	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
136315	chr2	175007601	175007880	+	0	NA	Intergenic	Intergenic	-2359	NM_001371513	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
37517	chr11	18589871	18590230	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-1316	NM_001261382	55293		NM_018314	ENSG00000151116	UEVLD	ATTP|UEV3	UEV and lactate/malate dehyrogenase domains	protein-coding
23604	chr1	230120621	230121180	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	53662	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
47589	chr12	4816251	4816350	+	0	NA	intron (NM_002235, intron 1 of 1)	(GT)n|Simple_repeat|Simple_repeat	7124	NM_002235	3742		NM_002235	ENSG00000151079	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel subfamily A member 6	protein-coding
154781	chr22	36644351	36644450	+	0	NA	intron (NR_166440, intron 1 of 4)	intron (NR_166440, intron 1 of 4)	59352	NR_166440	10369		NM_006078	ENSG00000166862	CACNG2	MRD10	calcium voltage-gated channel auxiliary subunit gamma 2	protein-coding
203375	chr6	170462221	170463050	+	0	NA	Intergenic	Intergenic	90672	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
29811	chr10	72303571	72304250	+	0	NA	Intergenic	Intergenic	29986	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
105605	chr18	702921	703180	+	0	NA	intron (NM_001354067, intron 2 of 15)	intron (NM_001354067, intron 2 of 15)	9580	NM_202758	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
238484	chrX	153474171	153475480	+	0	NA	intron (NR_169631, intron 1 of 10)	(CGCGGCA)n|Simple_repeat|Simple_repeat	-4194	NM_017518	55559		NM_017518	ENSG00000213397	HAUS7	UCHL5IP|UIP1	HAUS augmin like complex subunit 7	protein-coding
219187	chr8	66588951	66590400	+	0	NA	intron (NM_001144755, intron 8 of 14)	AluJb|SINE|Alu	23543	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
46823	chr11	130766451	130766630	+	0	NA	Intergenic	Intergenic	93584	NR_164144	283171		NM_001271983	ENSG00000175728	LINC02873	C11orf44	long intergenic non-protein coding RNA 2873	ncRNA
187785	chr5	146187471	146188280	+	0	NA	Intergenic	L2a|LINE|L2	-5088	NM_016460	51520		NM_016460	ENSG00000133706	LARS1	HSPC192|ILFS1|LARS|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|cLRS|hr025Cl	leucyl-tRNA synthetase 1	protein-coding
229906	chr9	126609001	126609530	+	0	NA	Intergenic	MIR|SINE|MIR	-4663	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
46992	chr12	75651	75750	+	0	NA	intron (NM_001170738, intron 1 of 13)	intron (NM_001170738, intron 1 of 13)	-1676	NM_015232	440073		NM_015232	ENSG00000120645	IQSEC3	-	IQ motif and Sec7 domain ArfGEF 3	protein-coding
11125	chr1	86473951	86474400	+	0	NA	intron (NM_001285, intron 3 of 13)	intron (NM_001285, intron 3 of 13)	5248	NM_001285	1179		NM_001285	ENSG00000016490	CLCA1	CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1	chloride channel accessory 1	protein-coding
2459	chr1	9644701	9645250	+	0	NA	Intergenic	Intergenic	-6756	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
66638	chr14	63859071	63859300	+	0	NA	intron (NM_015180, intron 1 of 114)	MER20|DNA|hAT-Charlie	6181	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
22071	chr1	211337301	211337500	+	0	NA	intron (NM_001319207, intron 1 of 10)	L2a|LINE|L2	-8964	NM_145759	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
19710	chr1	181092371	181092780	+	0	NA	3' UTR (NM_016545, exon 1 of 1)	3' UTR (NM_016545, exon 1 of 1)	3875	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
146291	chr20	49133771	49133930	+	0	NA	intron (NM_001322927, intron 4 of 11)	intron (NM_001322927, intron 4 of 11)	54484	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
181137	chr5	38265651	38265850	+	0	NA	intron (NM_001205301, intron 1 of 22)	intron (NM_001205301, intron 1 of 22)	7191	NM_001205301	133584		NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
150789	chr21	43866601	43867780	+	0	NA	intron (NM_001369878, intron 1 of 8)	intron (NM_001369878, intron 1 of 8)	1967	NM_001369878	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
17853	chr1	159925101	159926400	+	0	NA	promoter-TSS (NM_003564)	promoter-TSS (NM_003564)	-243	NM_003564	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
104796	chr17	81732801	81733230	+	0	NA	Intergenic	Intergenic	20731	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
54740	chr12	93767001	93767800	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	-29577	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
212191	chr7	117072801	117073000	+	0	NA	non-coding (NR_109980, exon 4 of 5)	non-coding (NR_109980, exon 4 of 5)	17881	NR_109980	93654		NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA
93613	chr17	19150601	19151630	+	0	NA	intron (NM_001353418, intron 3 of 3)	AluSx|SINE|Alu	11509	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
94863	chr17	31513671	31513830	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	-21133	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
201395	chr6	145817051	145817150	+	0	NA	intron (NR_038244, intron 1 of 3)	MLT2A1|LTR|ERVL	2224	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
139603	chr2	225013521	225014050	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	-3245	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
87442	chr16	70746501	70746700	+	0	NA	intron (NM_001351157, intron 11 of 17)	intron (NM_001351157, intron 11 of 17)	-8495	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
122743	chr19	50095721	50096400	+	0	NA	Intergenic	Intergenic	1886	NR_024223	100169952		NR_024223		SNAR-A5	-	small NF90 (ILF3) associated RNA A5	snRNA
220625	chr8	100935601	100935880	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	14831	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
184306	chr5	96880951	96881050	+	0	NA	intron (NM_001130140, intron 2 of 18)	L2a|LINE|L2	4500	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
173591	chr4	10456621	10458250	+	0	NA	promoter-TSS (NM_001375817)	promoter-TSS (NM_001375817)	-9	NM_001375817	85460		NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
142616	chr20	5600801	5601930	+	0	NA	intron (NM_019593, intron 2 of 19)	AluSx|SINE|Alu	9641	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
55322	chr12	103932851	103933580	+	0	NA	intron (NM_003299, intron 4 of 17)	MER58A|DNA|hAT-Charlie	2790	NR_037425	100500842		NR_037425	ENSG00000284503	MIR3652	-	microRNA 3652	ncRNA
207403	chr7	44244121	44244600	+	0	NA	intron (NM_172080, intron 6 of 19)	intron (NM_172080, intron 6 of 19)	43382	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
24154	chr1	235858251	235858350	+	0	NA	intron (NM_001301365, intron 1 of 52)	MIRb|SINE|MIR	-5240	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
41504	chr11	66253521	66253980	+	0	NA	Intergenic	Intergenic	-3544	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
182585	chr5	65977201	65977600	+	0	NA	intron (NM_001253697, intron 1 of 25)	SVA_D|Retroposon|SVA	-31827	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
192046	chr6	16490971	16491130	+	0	NA	intron (NM_000332, intron 6 of 8)	MLT1K|LTR|ERVL-MaLR	252463	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
86098	chr16	57648101	57648330	+	0	NA	intron (NM_001370454, intron 2 of 13)	intron (NM_001370454, intron 2 of 13)	8723	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
116210	chr19	17499201	17499400	+	0	NA	intron (NM_198580, intron 7 of 11)	LTR13|LTR|ERVK	-12349	NM_012088	25796		NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
156290	chr22	40486721	40487150	+	0	NA	intron (NM_001282661, intron 3 of 13)	AluJb|SINE|Alu	-23495	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
139953	chr2	230864251	230865360	+	0	NA	promoter-TSS (NM_001012516)	promoter-TSS (NM_001012516)	-137	NM_030926	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
106494	chr18	14689721	14689980	+	0	NA	Intergenic	L1PA3|LINE|L1	-58322	NM_001367607	374860		NM_001145029	ENSG00000180777	ANKRD30B	NY-BR-1.1	ankyrin repeat domain 30B	protein-coding
122644	chr19	49847971	49848930	+	0	NA	intron (NR_040037, intron 1 of 3)	Tigger13a|DNA|TcMar-Tigger	-2255	NM_001364749	53635		NM_017432	ENSG00000104960	PTOV1	ACID2|PTOV-1	PTOV1 extended AT-hook containing adaptor protein	protein-coding
139704	chr2	227482821	227483350	+	0	NA	intron (NM_001135189, intron 1 of 11)	intron (NM_001135189, intron 1 of 11)	10929	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
173417	chr4	8176621	8177080	+	0	NA	Intergenic	Intergenic	-18037	NM_001130084	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
74439	chr15	59384151	59384750	+	0	NA	Intergenic	Intergenic	-11579	NM_004998	4643		NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
105367	chr17	82651851	82652150	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-3556	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
176479	chr4	89709071	89709230	+	0	NA	Intergenic	Intergenic	62584	NM_001375290	6622		NM_000345	ENSG00000145335	SNCA	NACP|PARK1|PARK4|PD1	synuclein alpha	protein-coding
235369	chrX	44893801	44894400	+	0	NA	intron (NM_001291416, intron 2 of 28)	L1MD1|LINE|L1	20912	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
40356	chr11	63973221	63973600	+	0	NA	Intergenic	Intergenic	-1210	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
195132	chr6	35677571	35678130	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluJb|SINE|Alu	11065	NM_001145776	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
128826	chr2	63053971	63054530	+	0	NA	intron (NR_130153, intron 4 of 4)	intron (NR_130153, intron 4 of 4)	3420	NM_014562	5013		NM_014562	ENSG00000115507	OTX1	-	orthodenticle homeobox 1	protein-coding
81201	chr16	4492701	4493300	+	0	NA	intron (NM_001286269, intron 2 of 6)	intron (NM_001286269, intron 2 of 6)	-2819	NM_001286270	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
237590	chrX	123861851	123862150	+	0	NA	intron (NM_001378590, intron 1 of 6)	U6|snRNA|snRNA	1550	NM_001378590	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
85209	chr16	47136271	47136630	+	0	NA	intron (NM_001201477, intron 1 of 8)	AluSz6|SINE|Alu	7495	NM_018092	81831		NM_018092	ENSG00000171208	NETO2	BTCL2|NEOT2	neuropilin and tolloid like 2	protein-coding
67661	chr14	73110921	73111180	+	0	NA	exon (NM_021239, exon 15 of 19)	exon (NM_021239, exon 15 of 19)	-25457	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
112941	chr19	7704551	7704850	+	0	NA	Intergenic	Intergenic	-2554	NM_002002	2208		NM_002002	ENSG00000104921	FCER2	BLAST-2|CD23|CD23A|CLEC4J|FCE2|FCErII|IGEBF	Fc epsilon receptor II	protein-coding
10755	chr1	76830551	76830650	+	0	NA	Intergenic	Intergenic	-36880	NM_001320273	81849		NM_030965	ENSG00000117069	ST6GALNAC5	SIAT7-E|SIAT7E|ST6GalNAcV	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
32383	chr10	102413021	102414300	+	0	NA	intron (NM_001270965, intron 6 of 17)	intron (NM_001270965, intron 6 of 17)	-4383	NR_073110	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
75583	chr15	67084901	67086630	+	0	NA	intron (NM_005902, intron 1 of 8)	MER5B|DNA|hAT-Charlie	20163	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
145926	chr20	46013521	46014730	+	0	NA	exon (NM_004994, exon 11 of 13)	exon (NM_004994, exon 11 of 13)	5217	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
218435	chr8	47899751	47900050	+	0	NA	intron (NM_006904, intron 28 of 85)	intron (NM_006904, intron 28 of 85)	60236	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
211638	chr7	106116221	106116480	+	0	NA	Intergenic	MER83|LTR|ERV1	-3774	NM_001381918	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
18084	chr1	160677351	160677730	+	0	NA	Intergenic	Intergenic	-30229	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
150617	chr21	43377201	43377400	+	0	NA	Intergenic	AluSc|SINE|Alu	-14951	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
110697	chr19	2289301	2291780	+	0	NA	exon (NM_001101391, exon 2 of 2)	exon (NM_001101391, exon 2 of 2)	-8365	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
180948	chr5	35003301	35003630	+	0	NA	intron (NM_001306173, intron 11 of 12)	intron (NM_001306173, intron 11 of 12)	44484	NM_031900	64902		NM_031900	ENSG00000113492	AGXT2	AGT2|BAIBA|DAIBAT	alanine--glyoxylate aminotransferase 2	protein-coding
221071	chr8	116879101	116879700	+	0	NA	Intergenic	Intergenic	-4600	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
116037	chr19	17193151	17193450	+	0	NA	intron (NM_004145, intron 21 of 39)	intron (NM_004145, intron 21 of 39)	-22057	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
153128	chr22	23718601	23719080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1417	NR_024448	91316		NR_024448	ENSG00000228315	GUSBP11	-	GUSB pseudogene 11	pseudo
73221	chr15	41618521	41618980	+	0	NA	Intergenic	Intergenic	-41662	NM_001164273	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
40198	chr11	62929901	62930300	+	0	NA	Intergenic	Intergenic	-8737	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
169423	chr3	161263151	161263250	+	0	NA	Intergenic	Intergenic	41889	NM_015938	51068		NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
33411	chr10	118621351	118621850	+	0	NA	Intergenic	Intergenic	-25952	NM_004248	2834		NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
235063	chrX	40156571	40156830	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	20577	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
234465	chrX	17744921	17745200	+	0	NA	intron (NM_006746, intron 2 of 6)	intron (NM_006746, intron 2 of 6)	7567	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
126357	chr2	27431451	27432150	+	0	NA	intron (NM_013392, intron 1 of 17)	intron (NM_013392, intron 1 of 17)	3169	NM_001321362	29959		NM_013392	ENSG00000115216	NRBP1	BCON3|MADM|MUDPNP|NRBP	nuclear receptor binding protein 1	protein-coding
5514	chr1	25778421	25778680	+	0	NA	intron (NM_001385185, intron 8 of 10)	MIRc|SINE|MIR	-21643	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
40405	chr11	64062071	64062230	+	0	NA	intron (NM_001384466, intron 1 of 2)	L2b|LINE|L2	25468	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
161432	chr3	42010721	42011180	+	0	NA	Intergenic	Intergenic	-48847	NR_136342	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
40891	chr11	65125371	65126200	+	0	NA	non-coding (NR_037568, exon 3 of 3)	non-coding (NR_037568, exon 3 of 3)	3464	NR_037568	740		NM_004927	ENSG00000149792	MRPL49	C11orf4|L49mt|MRP-L49|NOF|NOF1|mL49	mitochondrial ribosomal protein L49	protein-coding
216380	chr8	17907651	17907950	+	0	NA	Intergenic	Intergenic	-12262	NM_201552	2267		NM_004467	ENSG00000104760	FGL1	HFREP1|HP-041|HPS|LFIRE-1|LFIRE1	fibrinogen like 1	protein-coding
108295	chr18	63321701	63321930	+	0	NA	Intergenic	AluSg|SINE|Alu	-2046	NM_000657	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
92814	chr17	16020771	16020930	+	0	NA	intron (NM_017775, intron 7 of 9)	AluJr|SINE|Alu	21026	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
155888	chr22	39522251	39524030	+	0	NA	TTS (NM_001675)	TTS (NM_001675)	2576	NM_182810	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
34600	chr10	133265971	133266330	+	0	NA	intron (NM_001109, intron 21 of 22)	L1MC4a|LINE|L1	10718	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
225919	chr9	40326071	40326430	+	0	NA	intron (NR_136310, intron 4 of 4)	intron (NR_136310, intron 4 of 4)	2679	NR_026759	100133036		NR_026759	ENSG00000290718	FAM95B1	-	family with sequence similarity 95 member B1	ncRNA
239352	chrY	19502071	19502600	+	0	NA	intron (NR_033732, intron 1 of 10)	intron (NR_033732, intron 1 of 10)	818	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
15598	chr1	150595321	150595900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-15872	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
8094	chr1	39092271	39093030	+	0	NA	intron (NM_012090, intron 1 of 92)	L1MC5|LINE|L1	8483	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
158803	chr3	9702971	9703130	+	0	NA	promoter-TSS (NM_001308388)	promoter-TSS (NM_001308388)	-783	NM_001308388	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
171820	chr4	669101	669880	+	0	NA	intron (NM_001145291, intron 21 of 21)	intron (NM_001145291, intron 21 of 21)	4786	NM_007100	521		NM_007100	ENSG00000169020	ATP5ME	ATP5I|ATP5K	ATP synthase membrane subunit e	protein-coding
152785	chr22	21814701	21815450	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	52570	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
234572	chrX	19751951	19752850	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	47373	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
104768	chr17	81702431	81704530	+	0	NA	5' UTR (NM_002949, exon 1 of 5)	5' UTR (NM_002949, exon 1 of 5)	113	NM_002949	6182		NM_002949	ENSG00000262814	MRPL12	5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12|bL12m	mitochondrial ribosomal protein L12	protein-coding
96124	chr17	39651171	39651530	+	0	NA	intron (NM_001165938, intron 1 of 13)	intron (NM_001165938, intron 1 of 13)	-13999	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
144852	chr20	36892021	36892480	+	0	NA	TTS (NM_001363733)	TTS (NM_001363733)	16112	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
180660	chr5	17529921	17530180	+	0	NA	Intergenic	AluSx|SINE|Alu	-37974	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
188101	chr5	150361151	150361450	+	0	NA	intron (NM_001371623, intron 2 of 26)	intron (NM_001371623, intron 2 of 26)	3603	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
213456	chr7	138882271	138882430	+	0	NA	intron (NM_001164665, intron 10 of 19)	intron (NM_001164665, intron 10 of 19)	-84154	NM_020632	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
115700	chr19	16206071	16206230	+	0	NA	intron (NM_001130524, intron 2 of 12)	intron (NM_001130524, intron 2 of 12)	8239	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
35628	chr11	1829871	1830030	+	0	NA	Intergenic	Intergenic	-4477	NM_138567	90019		NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
92037	chr17	7489351	7490030	+	0	NA	intron (NM_000937, intron 1 of 29)	MER119|DNA|hAT-Charlie	5324	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
189293	chr5	172113801	172114280	+	0	NA	intron (NM_005990, intron 4 of 18)	MIRb|SINE|MIR	74184	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
232338	chr9	135477221	135477680	+	0	NA	Intergenic	AluJb|SINE|Alu	-2332	NM_014811	9858		NM_014811	ENSG00000196422	PPP1R26	KIAA0649|NRBE3	protein phosphatase 1 regulatory subunit 26	protein-coding
125012	chr2	9553951	9554130	+	0	NA	intron (NM_001382778, intron 1 of 18)	AluSg|SINE|Alu	1790	NM_003183	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
222629	chr8	141104651	141105230	+	0	NA	Intergenic	Intergenic	-23649	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
216234	chr8	12191421	12191680	+	0	NA	intron (NR_003494, intron 2 of 5)	intron (NR_003494, intron 2 of 5)	2579	NR_003494	85002		NM_001083537	ENSG00000186523	FAM86B1	-	family with sequence similarity 86 member B1	protein-coding
177324	chr4	109731371	109731530	+	0	NA	intron (NM_001375281, intron 12 of 12)	intron (NM_001375281, intron 12 of 12)	-1380	NM_030821	81579		NM_030821	ENSG00000123739	PLA2G12A	GXII|PLA2G12|ROSSY	phospholipase A2 group XIIA	protein-coding
3230	chr1	13779921	13780180	+	0	NA	exon (NM_012231, exon 8 of 10)	exon (NM_012231, exon 8 of 10)	30635	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
180589	chr5	14984051	14984430	+	0	NA	Intergenic	Intergenic	-112462	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
8404	chr1	40401551	40401650	+	0	NA	intron (NM_001198980, intron 1 of 9)	intron (NM_001198980, intron 1 of 9)	4800	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
7550	chr1	34986371	34986530	+	0	NA	3' UTR (NM_007167, exon 16 of 16)	3' UTR (NM_007167, exon 16 of 16)	-1103	NM_001195156	100506144		NM_001195156	ENSG00000243749	TMEM35B	ZMYM6NB	transmembrane protein 35B	protein-coding
142134	chr20	2742871	2743480	+	0	NA	intron (NR_138537, intron 7 of 17)	intron (NR_138537, intron 7 of 17)	50297	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
48412	chr12	9667201	9667800	+	0	NA	Intergenic	Intergenic	-2213	NM_001197318	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
103638	chr17	78755121	78755680	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSz|SINE|Alu	-18498	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
128068	chr2	47861651	47862150	+	0	NA	intron (NM_001190274, intron 1 of 22)	MLT1L|LTR|ERVL-MaLR	26819	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
163292	chr3	50331201	50332100	+	0	NA	exon (NM_001206957, exon 3 of 5)	exon (NM_001206957, exon 3 of 5)	-3412	NM_007275	11334		NM_007275	ENSG00000114383	TUSC2	C3orf11|FUS1|PAP|PDAP2	tumor suppressor 2, mitochondrial calcium regulator	protein-coding
114623	chr19	12981321	12981780	+	0	NA	Intergenic	AluY|SINE|Alu	11932	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
180250	chr5	1649051	1649350	+	0	NA	Intergenic	L1MA4A|LINE|L1	-15195	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
134671	chr2	144470551	144470650	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-49014	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
33098	chr10	110917721	110921280	+	0	NA	promoter-TSS (NM_001195306)	promoter-TSS (NM_001195306)	-43	NM_001269039	8036		NM_007373	ENSG00000108061	SHOC2	NSLH1|SIAA0862|SOC2|SUR8	SHOC2 leucine rich repeat scaffold protein	protein-coding
187082	chr5	140180151	140180450	+	0	NA	intron (NM_032412, intron 1 of 2)	intron (NM_032412, intron 1 of 2)	5112	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
160618	chr3	31508101	31508300	+	0	NA	Intergenic	Intergenic	-24725	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
174925	chr4	49116721	49117000	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	130218	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
165506	chr3	100262421	100262750	+	0	NA	intron (NM_001199198, intron 1 of 18)	AluSz|SINE|Alu	1593	NM_001199198	55773		NM_018309	ENSG00000036054	TBC1D23	NS4ATP1|PCH11	TBC1 domain family member 23	protein-coding
4354	chr1	20663501	20663850	+	0	NA	TTS (NM_001287212)	TTS (NM_001287212)	-2306	NM_005216	1650		NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein-coding
223243	chr8	143622801	143623200	+	0	NA	Intergenic	L1ME3G|LINE|L1	-5451	NM_001317783	7264		NM_003313	ENSG00000104522	GFUS	FX|P35B|SDR4E1|TSTA3	GDP-L-fucose synthase	protein-coding
74024	chr15	52183371	52183930	+	0	NA	intron (NR_102751, intron 2 of 2)	intron (NR_102751, intron 2 of 2)	3624	NR_102751	100129973		NR_102751		CERNA1	-	competing endogenous lncRNA 1 for miR-4707-5p and miR-4767	ncRNA
32750	chr10	104318401	104318680	+	0	NA	intron (NM_001272013, intron 1 of 1)	intron (NM_001272013, intron 1 of 1)	-4824	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
14506	chr1	144568971	144569500	+	0	NA	Intergenic	L1MEc|LINE|L1	-17292	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
108529	chr18	74377751	74378650	+	0	NA	Intergenic	Intergenic	-31248	NR_131977	101927606		NR_131977	ENSG00000259779	LINC01922	-	long intergenic non-protein coding RNA 1922	ncRNA
223327	chr8	143823001	143823450	+	0	NA	intron (NM_001271099, intron 1 of 10)	intron (NM_001271099, intron 1 of 10)	5816	NM_001362896	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
238527	chrX	153692501	153692700	+	0	NA	intron (NM_005629, intron 4 of 12)	intron (NM_005629, intron 4 of 12)	3089	NM_001142806	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
160485	chr3	30613401	30614000	+	0	NA	intron (NM_003242, intron 1 of 6)	MER115|DNA|hAT-Tip100	7099	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
84777	chr16	30998601	30999830	+	0	NA	intron (NM_052874, intron 4 of 9)	intron (NM_052874, intron 4 of 9)	11423	NM_052874	112755		NM_052874	ENSG00000099365	STX1B	GEFSP9|STX1B1|STX1B2	syntaxin 1B	protein-coding
179113	chr4	168831571	168833230	+	0	NA	intron (NM_001367568, intron 1 of 11)	CpG	305	NM_001367570	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
64860	chr14	35290801	35291000	+	0	NA	intron (NM_001282234, intron 1 of 6)	intron (NM_001282234, intron 1 of 6)	-1417	NR_104110	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
127430	chr2	42137471	42137630	+	0	NA	Intergenic	Intergenic	-31803	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
63610	chr14	20611421	20611750	+	0	NA	Intergenic	L2a|LINE|L2	-20762	NM_001024822	493901		NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
131270	chr2	96066371	96066730	+	0	NA	Intergenic	Intergenic	-30576	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
99219	chr17	49575171	49576120	+	0	NA	promoter-TSS (NM_007225)	promoter-TSS (NM_007225)	-226	NM_007225	11248		NM_007225	ENSG00000182575	NXPH3	NPH3	neurexophilin 3	protein-coding
226835	chr9	77830401	77830850	+	0	NA	intron (NM_002072, intron 2 of 6)	Charlie7|DNA|hAT-Charlie	-182303	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
62585	chr13	99990651	99991600	+	0	NA	Intergenic	Intergenic	6784	NR_047483	100861542		NR_047483	ENSG00000260738	LINC00554	lncZic2	long intergenic non-protein coding RNA 554	ncRNA
183422	chr5	78300271	78300880	+	0	NA	Intergenic	THE1D-int|LTR|ERVL-MaLR	-5877	NM_001271769	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
3772	chr1	16691351	16691450	+	0	NA	intron (NR_026567, intron 10 of 10)	intron (NR_026567, intron 10 of 10)	10145	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
114724	chr19	13173651	13174350	+	0	NA	Intergenic	AluSq2|SINE|Alu	23589	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
59786	chr13	30259521	30260050	+	0	NA	intron (NM_032116, intron 3 of 10)	L1PA3|LINE|L1	47226	NM_001014380	84056		NM_032116	ENSG00000102781	KATNAL1	-	katanin catalytic subunit A1 like 1	protein-coding
171090	chr3	195492371	195493030	+	0	NA	Intergenic	Intergenic	-49680	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
79116	chr16	207121	207930	+	0	NA	intron (NM_018032, intron 4 of 8)	intron (NM_018032, intron 4 of 8)	21924	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
64401	chr14	24168451	24169850	+	0	NA	Intergenic	AluJo|SINE|Alu	-2930	NM_005132	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
42875	chr11	73313371	73314130	+	0	NA	intron (NM_014786, intron 1 of 20)	MIRc|SINE|MIR	-4389	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
116426	chr19	18014181	18015330	+	0	NA	TTS (NM_015683)	TTS (NM_015683)	6585	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
64895	chr14	35392951	35393250	+	0	NA	Intergenic	Intergenic	11649	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
176167	chr4	83267701	83267900	+	0	NA	intron (NM_015697, intron 5 of 6)	L1MB7|LINE|L1	16998	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
153315	chr22	24245151	24245800	+	0	NA	promoter-TSS (NM_001099782)	promoter-TSS (NM_001099782)	-333	NM_001099782	2687		NM_004121	ENSG00000099998	GGT5	GGL|GGT 5|GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
113395	chr19	9308271	9308430	+	0	NA	intron (NM_198535, intron 1 of 5)	intron (NM_198535, intron 1 of 5)	1488	NM_198535	374879		NM_198535	ENSG00000196110	ZNF699	DEGCAGS|hang	zinc finger protein 699	protein-coding
69464	chr14	94950571	94950930	+	0	NA	Intergenic	(GTTTT)n|Simple_repeat|Simple_repeat	180108	NR_144432	108868751		NR_144432		GSC-DT	DIGIT	GSC divergent transcript	ncRNA
70924	chr14	104251271	104251430	+	0	NA	intron (NR_146612, intron 1 of 2)	CpG	27766	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
38407	chr11	44952421	44952880	+	0	NA	Intergenic	Intergenic	-1344	NM_001318386	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
25304	chr10	6207521	6208180	+	0	NA	intron (NM_001314063, intron 1 of 15)	intron (NM_001314063, intron 1 of 15)	4918	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
205759	chr7	23517051	23517480	+	0	NA	intron (NM_013293, intron 2 of 7)	AluY|SINE|Alu	14716	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
135757	chr2	169582971	169583430	+	0	NA	Intergenic	L1PA13|LINE|L1	-1151	NM_004792	9360		NM_004792	ENSG00000138398	PPIG	CARS-Cyp|CYP|SCAF10|SRCyp	peptidylprolyl isomerase G	protein-coding
170388	chr3	184808151	184808330	+	0	NA	Intergenic	Intergenic	-3903	NM_001349297	23355		NM_015303	ENSG00000156931	VPS8	KIAA0804	VPS8 subunit of CORVET complex	protein-coding
190772	chr6	501811	503050	+	0	NA	intron (NM_018303, intron 23 of 27)	intron (NM_018303, intron 23 of 27)	110678	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
151862	chr22	18595021	18595550	+	0	NA	Intergenic	Intergenic	16634	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
65016	chr14	39038651	39038750	+	0	NA	intron (NM_006364, intron 19 of 19)	intron (NM_006364, intron 19 of 19)	-64440	NR_146545	105370458		NR_146545	ENSG00000258651	SEC23A-AS1	-	SEC23A antisense RNA 1	ncRNA
24995	chr10	3170851	3171350	+	0	NA	intron (NR_144641, intron 1 of 26)	L1M5|LINE|L1	1616	NM_001347729	10531		NM_014889	ENSG00000107959	PITRM1	MP1|PreP|SCAR30	pitrilysin metallopeptidase 1	protein-coding
130646	chr2	86170221	86170680	+	0	NA	intron (NM_001100169, intron 6 of 14)	intron (NM_001100169, intron 6 of 14)	22658	NR_039939	100616159		NR_039939	ENSG00000265420	MIR4779	-	microRNA 4779	ncRNA
229683	chr9	124619551	124619650	+	0	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	-38836	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
209762	chr7	87214971	87215280	+	0	NA	intron (NR_138030, intron 1 of 3)	MER33|DNA|hAT-Charlie	4607	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
230140	chr9	127736771	127736930	+	0	NA	Intergenic	AluSc|SINE|Alu	-1556	NM_001134430	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
72230	chr15	30392771	30393850	+	0	NA	5' UTR (NM_148911, exon 1 of 9)	5' UTR (NM_148911, exon 1 of 9)	230	NM_139320	89832		NM_139320	ENSG00000166664	CHRFAM7A	CHRNA7|CHRNA7-DR1|D-10|NACHRA7	CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion	protein-coding
139578	chr2	224951651	224952200	+	0	NA	intron (NM_014689, intron 1 of 55)	MLT1E2|LTR|ERVL-MaLR	-4876	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
37801	chr11	32809271	32809430	+	0	NA	Intergenic	Intergenic	-14692	NM_001008391	493860		NM_001008391	ENSG00000186714	CCDC73	NY-SAR-79	coiled-coil domain containing 73	protein-coding
37495	chr11	18403601	18403980	+	0	NA	exon (NM_001165414, exon 6 of 8)	exon (NM_001165414, exon 6 of 8)	7524	NM_001165414	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
195810	chr6	41190871	41191030	+	0	NA	3' UTR (NM_024807, exon 5 of 5)	3' UTR (NM_024807, exon 5 of 5)	10199	NM_024807	79865		NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
208544	chr7	70695351	70695450	+	0	NA	intron (NM_015570, intron 5 of 18)	CpG	-436744	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
131543	chr2	96739501	96741080	+	0	NA	promoter-TSS (NM_001322356)	promoter-TSS (NM_001322356)	-198	NM_001322352	81562		NM_030805	ENSG00000114988	LMAN2L	MRD69|MRT52|VIPL	lectin, mannose binding 2 like	protein-coding
60686	chr13	43786801	43787550	+	0	NA	promoter-TSS (NM_001347966)	promoter-TSS (NM_001347966)	-203	NM_001347965	55068		NM_017993	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
29507	chr10	70610001	70611520	+	0	NA	Intergenic	Intergenic	-7972	NM_005041	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
227414	chr9	89593421	89594150	+	0	NA	Intergenic	Intergenic	-11227	NM_006705	10912		NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
24960	chr10	2315001	2315200	+	0	NA	promoter-TSS (NR_038884)	promoter-TSS (NR_038884)	-26	NR_038884	399708		NR_038884		LINC00701	-	long intergenic non-protein coding RNA 701	ncRNA
226769	chr9	76458951	76460230	+	0	NA	intron (NM_001097633, intron 1 of 2)	CpG	408	NM_001490	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
198694	chr6	108114871	108115480	+	0	NA	Intergenic	CpG	-8458	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
46847	chr11	133832751	133834050	+	0	NA	Intergenic	CpG	12113	NM_174927	219938		NM_174927	ENSG00000166118	SPATA19	CT132|SPAS1|spergen1	spermatogenesis associated 19	protein-coding
76546	chr15	75203901	75204200	+	0	NA	intron (NM_015492, intron 1 of 2)	intron (NM_015492, intron 1 of 2)	2168	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
199305	chr6	112042201	112042400	+	0	NA	Intergenic	Intergenic	-11804	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
37460	chr11	18266551	18266850	+	0	NA	intron (NM_001178006, intron 2 of 4)	intron (NM_001178006, intron 2 of 4)	436	NM_199161	6288		NM_000331	ENSG00000173432	SAA1	PIG4|SAA|SAA2|TP53I4	serum amyloid A1	protein-coding
86411	chr16	66829221	66829780	+	0	NA	intron (NM_001018159, intron 1 of 20)	MIRc|SINE|MIR	1476	NM_001286500	8883		NM_003905	ENSG00000159593	NAE1	A-116A10.1|APPBP1|HPP1|NEDFIH|ula-1	NEDD8 activating enzyme E1 subunit 1	protein-coding
179736	chr5	219981	221230	+	0	NA	intron (NM_001330758, intron 1 of 12)	intron (NM_001330758, intron 1 of 12)	2285	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
70677	chr14	103087621	103089180	+	0	NA	intron (NM_001330236, intron 3 of 3)	intron (NM_001330236, intron 3 of 3)	4190	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
77033	chr15	78750771	78751530	+	0	NA	promoter-TSS (NR_036495)	promoter-TSS (NR_036495)	-887	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
37108	chr11	13288221	13288680	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	10660	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
67237	chr14	68965251	68965750	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	13802	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
104175	chr17	80419821	80420400	+	0	NA	TTS (NR_039883)	TTS (NR_039883)	692	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
101456	chr17	67453971	67454330	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSx1|SINE|Alu	-17339	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
200858	chr6	138546971	138547130	+	0	NA	intron (NM_020464, intron 1 of 6)	MamRTE1|LINE|RTE-BovB	25519	NM_020464	57224		NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
70368	chr14	101888251	101888350	+	0	NA	intron (NM_178587, intron 5 of 11)	intron (NM_178587, intron 5 of 11)	-76273	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
20095	chr1	186621021	186621280	+	0	NA	Intergenic	MLT2F|LTR|ERVL	59273	NM_000963	5743		NM_000963	ENSG00000073756	PTGS2	COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2	prostaglandin-endoperoxide synthase 2	protein-coding
56106	chr12	110735571	110735830	+	0	NA	intron (NM_002710, intron 1 of 6)	AluSq|SINE|Alu	7191	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
43713	chr11	86040221	86040550	+	0	NA	intron (NM_001206947, intron 1 of 18)	FLAM_C|SINE|Alu	28699	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
128096	chr2	47904021	47905800	+	0	NA	intron (NM_001190274, intron 1 of 22)	intron (NM_001190274, intron 1 of 22)	428	NM_001374325	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
210412	chr7	100025971	100026480	+	0	NA	intron (NR_144477, intron 3 of 6)	AluSp|SINE|Alu	10629	NR_144477	7586		NM_003439	ENSG00000106261	ZKSCAN1	KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
85282	chr16	48599601	48600030	+	0	NA	intron (NM_153029, intron 1 of 6)	MLT1J|LTR|ERVL-MaLR	10365	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
205931	chr7	25894201	25894630	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	55571	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
165887	chr3	106205821	106207050	+	0	NA	Intergenic	Intergenic	-337034	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
107873	chr18	55489421	55489880	+	0	NA	intron (NM_001369569, intron 3 of 19)	intron (NM_001369569, intron 3 of 19)	10429	NR_039754	100616290		NR_039754	ENSG00000264571	MIR4529	-	microRNA 4529	ncRNA
6153	chr1	27398371	27398850	+	0	NA	Intergenic	Intergenic	5988	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
229784	chr9	125236041	125237230	+	0	NA	exon (NM_005347, exon 8 of 8)	exon (NM_005347, exon 8 of 8)	4708	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
20060	chr1	185594451	185594950	+	0	NA	intron (NR_110793, intron 2 of 3)	L2c|LINE|L2	33788	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
53755	chr12	68664971	68665730	+	0	NA	3' UTR (NM_015646, exon 8 of 8)	3' UTR (NM_015646, exon 8 of 8)	21509	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
163127	chr3	50131351	50132530	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-23118	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
95235	chr17	35341501	35342180	+	0	NA	Intergenic	MER11D|LTR|ERVK	31781	NM_001376010	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
52068	chr12	54036851	54037430	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	3190	NR_030753	693200		NR_030753	ENSG00000207571	MIR615	MIRN615|hsa-mir-615|mir-615	microRNA 615	ncRNA
162489	chr3	48566051	48566500	+	0	NA	exon (NM_000094, exon 114 of 119)	exon (NM_000094, exon 114 of 119)	-2494	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
238370	chrX	149930651	149931180	+	0	NA	exon (NM_001351114, exon 2 of 2)	exon (NM_001351114, exon 2 of 2)	1342	NM_001351114	101927685		NM_001351114	ENSG00000283463	HSFX4	-	heat shock transcription factor family, X-linked member 4	protein-coding
223570	chr8	144266021	144267280	+	0	NA	exon (NM_001080514, exon 1 of 2)	exon (NM_001080514, exon 1 of 2)	197	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
82428	chr16	16312101	16312700	+	0	NA	Intergenic	Intergenic	2521	NR_036142	100422956		NR_036142	ENSG00000265373	MIR3180-2	mir-3180-2	microRNA 3180-2	ncRNA
214749	chr7	151057121	151059000	+	0	NA	promoter-TSS (NM_001164410)	promoter-TSS (NM_001164410)	-140	NM_001199692	6522		NM_003040	ENSG00000164889	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3|OPTB9	solute carrier family 4 member 2	protein-coding
198793	chr6	108923851	108924350	+	0	NA	promoter-TSS (NR_104137)	promoter-TSS (NR_104137)	3	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
238845	chrX	154469921	154470180	+	0	NA	exon (NM_017514, exon 29 of 33)	exon (NM_017514, exon 29 of 33)	9207	NM_006014	8270		NM_006014	ENSG00000196976	LAGE3	CVG5|DXS9879E|DXS9951E|ESO3|GAMOS2|ITBA2|Pcc1	L antigen family member 3	protein-coding
130990	chr2	87743571	87744130	+	0	NA	Intergenic	Intergenic	-4237	NM_002665	5342		NM_002665	ENSG00000125551	PLGLB2	PLGLA|PLGLA1|PLGP1|PLGP2|PRGA	plasminogen like B2	protein-coding
146376	chr20	49280071	49280730	+	0	NA	promoter-TSS (NR_003695)	promoter-TSS (NR_003695)	87	NR_003695	100113393		NR_003695	ENSG00000222365	SNORD12B	-	small nucleolar RNA, C/D box 12B	snoRNA
134358	chr2	136141721	136142180	+	0	NA	Intergenic	Intergenic	-23801	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
221590	chr8	125429151	125430800	+	0	NA	promoter-TSS (NM_025195)	promoter-TSS (NM_025195)	-383	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
165381	chr3	94015101	94015300	+	0	NA	exon (NM_001001850, exon 2 of 2)	exon (NM_001001850, exon 2 of 2)	13397	NM_001001850	415117		NM_001001850	ENSG00000178750	STX19	-	syntaxin 19	protein-coding
229266	chr9	119169551	119169650	+	0	NA	intron (NM_014618, intron 7 of 7)	L1PA2|LINE|L1	199835	NM_014618	1620		NM_014618	ENSG00000078725	BRINP1	DBC1|DBCCR1|FAM5A	BMP/retinoic acid inducible neural specific 1	protein-coding
136128	chr2	173959321	173960280	+	0	NA	intron (NM_001172712, intron 3 of 6)	intron (NM_001172712, intron 3 of 6)	4080	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
141425	chr2	240989751	240990200	+	0	NA	intron (NM_001351305, intron 30 of 31)	intron (NM_001351305, intron 30 of 31)	-8643	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
148628	chr21	5708971	5709150	+	0	NA	Intergenic	Intergenic	139856	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
64529	chr14	24434351	24434680	+	0	NA	intron (NM_015299, intron 5 of 7)	AluSc|SINE|Alu	4561	NM_015299	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
196714	chr6	45000921	45001180	+	0	NA	intron (NM_001350327, intron 5 of 9)	L4_A_Mam|LINE|RTE-X	196720	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
199667	chr6	122460671	122460830	+	0	NA	intron (NM_020755, intron 1 of 9)	L1ME1|LINE|L1	11057	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
125715	chr2	20451551	20451850	+	0	NA	Intergenic	Intergenic	4626	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
158557	chr3	4474821	4475080	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-7668	NM_001164675	285362		NM_182760	ENSG00000144455	SUMF1	AAPA3037|FGE|UNQ3037	sulfatase modifying factor 1	protein-coding
120193	chr19	42277171	42277330	+	0	NA	intron (NM_001379480, intron 2 of 20)	AluSx|SINE|Alu	-7219	NM_001379484	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
52994	chr12	57505451	57505950	+	0	NA	intron (NM_004990, intron 11 of 20)	AluJr4|SINE|Alu	-6988	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
176239	chr4	86595401	86595800	+	0	NA	intron (NM_080683, intron 1 of 47)	intron (NM_080683, intron 1 of 47)	1285	NM_080684	5783		NM_006264	ENSG00000163629	PTPN13	FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E	protein tyrosine phosphatase non-receptor type 13	protein-coding
210741	chr7	100635051	100635350	+	0	NA	intron (NM_003227, intron 3 of 17)	AluSx1|SINE|Alu	-1550	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
217329	chr8	27490621	27492280	+	0	NA	intron (NM_001256483, intron 1 of 17)	intron (NM_001256483, intron 1 of 17)	307	NM_001256482	2053		NM_001979	ENSG00000120915	EPHX2	ABHD20|CEH|SEH	epoxide hydrolase 2	protein-coding
82646	chr16	19126871	19127630	+	0	NA	Intergenic	Intergenic	13286	NM_001034841	162073		NM_001034841	ENSG00000205730	ITPRIPL2	D1C	ITPRIP like 2	protein-coding
11166	chr1	87049971	87050580	+	0	NA	intron (NM_001134492, intron 1 of 4)	intron (NM_001134492, intron 1 of 4)	-79490	NR_026988	339524		NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
218275	chr8	42272871	42273180	+	0	NA	intron (NM_001242778, intron 2 of 20)	AluJr|SINE|Alu	1723	NM_001242778	3551		NM_001556	ENSG00000104365	IKBKB	IKK-2|IKK-beta|IKK2|IKKB|IMD15|IMD15A|IMD15B|NFKBIKB	inhibitor of nuclear factor kappa B kinase subunit beta	protein-coding
41031	chr11	65445771	65446180	+	0	NA	TTS (NR_131012)	TTS (NR_131012)	1517	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
45039	chr11	117037471	117039100	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	60143	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
179360	chr4	183405271	183405630	+	0	NA	Intergenic	Intergenic	-39186	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
152082	chr22	19758901	19759100	+	0	NA	intron (NM_080646, intron 1 of 8)	CpG	-1778	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
12562	chr1	108699601	108700650	+	0	NA	3' UTR (NM_001349768, exon 7 of 7)	3' UTR (NM_001349768, exon 7 of 7)	7815	NM_001349759	55119		NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
53275	chr12	63843371	63844630	+	0	NA	promoter-TSS (NM_020762)	promoter-TSS (NM_020762)	-700	NM_001346201	57522		NM_020762	ENSG00000196935	SRGAP1	ARHGAP13|NMTC2	SLIT-ROBO Rho GTPase activating protein 1	protein-coding
143539	chr20	31576901	31577130	+	0	NA	Intergenic	Intergenic	-3752	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
167691	chr3	130517071	130517230	+	0	NA	Intergenic	CpG	-43184	NM_001102608	131873		NM_001102608	ENSG00000206384	COL6A6	-	collagen type VI alpha 6 chain	protein-coding
172921	chr4	3503921	3504330	+	0	NA	non-coding (NR_110005, exon 8 of 8)	non-coding (NR_110005, exon 8 of 8)	19581	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
197469	chr6	75282751	75282850	+	0	NA	intron (NM_018247, intron 1 of 6)	MIRb|SINE|MIR	1992	NM_018247	55754		NM_018247	ENSG00000112697	TMEM30A	C6orf67|CDC50A	transmembrane protein 30A	protein-coding
194416	chr6	33072621	33072880	+	0	NA	intron (NM_001242525, intron 2 of 5).8	intron (NM_001242525, intron 2 of 5).8	927	NM_033554	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
132675	chr2	108780271	108780900	+	0	NA	intron (NM_006267, intron 25 of 28)	AluSx|SINE|Alu	-6165	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
160992	chr3	37248871	37249030	+	0	NA	intron (NM_001172713, intron 1 of 22)	MamRep605|LTR?|LTR?	-4755	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
8781	chr1	42818551	42818650	+	0	NA	intron (NM_001017922, intron 1 of 11)	AluJo|SINE|Alu	-1203	NM_199342	374969		NM_199342	ENSG00000177868	SVBP	CCDC23|NEDAHM	small vasohibin binding protein	protein-coding
81444	chr16	8872371	8872730	+	0	NA	Intergenic	AluSx|SINE|Alu	-3538	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
142202	chr20	3039671	3039900	+	0	NA	Intergenic	L2b|LINE|L2	-3837	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
35884	chr11	2398101	2398300	+	0	NA	TTS (NM_001297649)	TTS (NM_001297649)	-2550	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
86150	chr16	57749921	57750380	+	0	NA	intron (NM_005886, intron 4 of 19)	intron (NM_005886, intron 4 of 19)	14380	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
196613	chr6	44250551	44251200	+	0	NA	intron (NM_001371238, intron 6 of 11)	intron (NM_001371238, intron 6 of 11)	2932	NM_001371238	3326		NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
33328	chr10	116609501	116609930	+	0	NA	TTS (NM_006229)	TTS (NM_006229)	-11238	NR_103727	5408		NM_005396	ENSG00000266200	PNLIPRP2	PLRP2	pancreatic lipase related protein 2 (gene/pseudogene)	protein-coding
146043	chr20	47352451	47352750	+	0	NA	promoter-TSS (NM_001363741)	promoter-TSS (NM_001363741)	39	NR_134501	101927377		NR_134501	ENSG00000231119	LOC101927377	-	uncharacterized LOC101927377	ncRNA
216102	chr8	11100751	11101050	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	-33811	NR_134308	101929269		NR_134308	ENSG00000254839	LOC101929269	-	uncharacterized LOC101929269	ncRNA
183950	chr5	88145221	88146130	+	0	NA	Intergenic	Intergenic	123170	NM_153354	153396		NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
175611	chr4	75940801	75941780	+	0	NA	promoter-TSS (NM_001042402)	promoter-TSS (NM_001042402)	-277	NM_001042402	27163		NM_014435	ENSG00000138744	NAAA	ASAHL|PLT	N-acylethanolamine acid amidase	protein-coding
139986	chr2	230923021	230923550	+	0	NA	intron (NM_005683, intron 1 of 1)	intron (NM_005683, intron 1 of 1)	1957	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
3640	chr1	16389221	16389700	+	0	NA	intron (NR_073501, intron 2 of 4)	AluY|SINE|Alu	22218	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
220943	chr8	108787321	108787700	+	0	NA	promoter-TSS (NM_153015)	promoter-TSS (NM_153015)	84	NR_136411	157753		NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
74394	chr15	58922171	58922330	+	0	NA	intron (NR_135043, intron 1 of 18)	AluSz|SINE|Alu	11429	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
96681	chr17	41125821	41126280	+	0	NA	intron (NM_001277332, intron 3 of 5)	AluSz|SINE|Alu	-1868	NM_031854	83755		NM_031854	ENSG00000213416	KRTAP4-12	KAP4.12|KRTAP4.12	keratin associated protein 4-12	protein-coding
169519	chr3	170044701	170045100	+	0	NA	intron (NM_014373, intron 2 of 3)	intron (NM_014373, intron 2 of 3)	6905	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
47502	chr12	4030971	4032080	+	0	NA	Intergenic	Intergenic	-158077	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
118451	chr19	35866871	35867030	+	0	NA	3' UTR (NM_199180, exon 15 of 15)	3' UTR (NM_199180, exon 15 of 15)	-1495	NM_005166	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
128404	chr2	55225001	55225480	+	0	NA	intron (NM_001353787, intron 1 of 9)	intron (NM_001353787, intron 1 of 9)	-6663	NM_001135592	6233		NM_002954	ENSG00000143947	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80|eS31	ribosomal protein S27a	protein-coding
12291	chr1	100721451	100721780	+	0	NA	intron (NM_080682, intron 2 of 7)	intron (NM_080682, intron 2 of 7)	1873	NM_001078	7412		NM_001078	ENSG00000162692	VCAM1	CD106|INCAM-100	vascular cell adhesion molecule 1	protein-coding
122818	chr19	50391001	50391200	+	0	NA	intron (NR_046402, intron 1 of 25)	SVA_F|Retroposon|SVA	6753	NR_046402	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
183600	chr5	80200751	80201050	+	0	NA	intron (NM_001174072, intron 2 of 11)	AluSz|SINE|Alu	55148	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
13236	chr1	112680371	112680930	+	0	NA	intron (NM_001369507, intron 1 of 19)	AluY|SINE|Alu	5912	NM_001369507	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
146349	chr20	49248121	49249450	+	0	NA	exon (NM_021035, exon 14 of 14)	exon (NM_021035, exon 14 of 14)	29272	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
49015	chr12	14255821	14256980	+	0	NA	Intergenic	Intergenic	-109232	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
75905	chr15	70046871	70047030	+	0	NA	TTS (NM_005078)	TTS (NM_005078)	32518	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
20325	chr1	197659271	197659580	+	0	NA	intron (NR_125340, intron 5 of 19)	L1ME4c|LINE|L1	116055	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
189041	chr5	169655021	169655600	+	0	NA	intron (NR_156756, intron 2 of 52)	LTR79|LTR|ERVL	18035	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
34145	chr10	128054301	128054700	+	0	NA	intron (NM_001323357, intron 3 of 16)	intron (NM_001323357, intron 3 of 16)	6888	NM_001323357	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
214776	chr7	151108301	151108700	+	0	NA	intron (NM_001350103, intron 1 of 18)	intron (NM_001350103, intron 1 of 18)	-6138	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
181909	chr5	54673751	54674130	+	0	NA	intron (NR_104658, intron 1 of 2)	intron (NR_104658, intron 1 of 2)	29384	NR_104659	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
95313	chr17	35583201	35583750	+	0	NA	Intergenic	Intergenic	-3847	NM_001282	163		NM_001282	ENSG00000006125	AP2B1	ADTB2|AP105B|AP2-BETA|CLAPB1	adaptor related protein complex 2 subunit beta 1	protein-coding
102171	chr17	75137401	75137800	+	0	NA	intron (NM_001002032, intron 3 of 3)	AluJo|SINE|Alu	-5805	NM_001252377	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
213483	chr7	139045201	139046030	+	0	NA	3' UTR (NM_001363491, exon 13 of 13)	3' UTR (NM_001363491, exon 13 of 13)	-1458	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
111840	chr19	4558201	4558730	+	0	NA	5' UTR (NM_032108, exon 2 of 17)	5' UTR (NM_032108, exon 2 of 17)	1219	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
128172	chr2	50492451	50492700	+	0	NA	intron (NM_001135659, intron 16 of 23)	intron (NM_001135659, intron 16 of 23)	-144819	NM_138735	9378		NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
56288	chr12	112267151	112267280	+	0	NA	intron (NM_001109662, intron 13 of 75)	7SK|RNA|RNA	-103894	NR_106921	102465519		NR_106921	ENSG00000283793	MIR6861	hsa-mir-6861	microRNA 6861	ncRNA
20473	chr1	198619251	198619950	+	0	NA	Intergenic	Intergenic	-19368	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
111375	chr19	3707951	3708450	+	0	NA	promoter-TSS (NM_001267560)	promoter-TSS (NM_001267560)	-184	NM_001267560	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
4884	chr1	23787471	23787900	+	0	NA	3' UTR (NM_020362, exon 6 of 6)	3' UTR (NM_020362, exon 6 of 6)	-3460	NM_007260	11313		NM_007260	ENSG00000011009	LYPLA2	APT-2|APT2|DJ886K2.4	lysophospholipase 2	protein-coding
173070	chr4	6179151	6179800	+	0	NA	intron (NM_144720, intron 1 of 12)	intron (NM_144720, intron 1 of 12)	15144	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
59053	chr13	20706371	20707150	+	0	NA	intron (NM_001385224, intron 1 of 1)	intron (NM_001385224, intron 1 of 1)	3061	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
44950	chr11	116789121	116789380	+	0	NA	TTS (NM_001371904)	TTS (NM_001371904)	-1227	NM_001317086	8882		NM_003904	ENSG00000109917	ZPR1	GKAF|ZNF259	ZPR1 zinc finger	protein-coding
27381	chr10	31004701	31005280	+	0	NA	intron (NM_001143768, intron 1 of 6)	L1MA9|LINE|L1	-5473	NM_001143769	220929		NM_182755	ENSG00000183621	ZNF438	bA330O11.1	zinc finger protein 438	protein-coding
181659	chr5	50419171	50419530	+	0	NA	intron (NM_198449, intron 2 of 8)	intron (NM_198449, intron 2 of 8)	21938	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
53622	chr12	68152971	68153430	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	6540	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
133290	chr2	113583671	113584930	+	0	NA	intron (NR_024077, intron 1 of 10)	CpG	647	NR_024077	375260		NM_198943	ENSG00000291134	WASH2P	FAM39B	WASP family homolog 2, pseudogene	pseudo
88991	chr16	87946351	87946450	+	0	NA	Intergenic	Intergenic	-2838	NM_001384918	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
56939	chr12	120467451	120467730	+	0	NA	intron (NM_003769, intron 1 of 3)	MIRb|SINE|MIR	2158	NM_003769	8683		NM_003769	ENSG00000111786	SRSF9	SFRS9|SRp30c	serine and arginine rich splicing factor 9	protein-coding
216474	chr8	19719601	19719800	+	0	NA	intron (NM_001354475, intron 1 of 9)	intron (NM_001354475, intron 1 of 9)	-36939	NR_024040	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
117344	chr19	19532221	19533630	+	0	NA	intron (NM_198537, intron 3 of 6)	intron (NM_198537, intron 3 of 6)	4014	NM_198537	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
37073	chr11	12640471	12641150	+	0	NA	Intergenic	Intergenic	-33611	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
168973	chr3	152395821	152396080	+	0	NA	intron (NM_001376837, intron 2 of 9)	MER1A|DNA|hAT-Charlie	-54960	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
217023	chr8	23222701	23223300	+	0	NA	intron (NM_003844, intron 1 of 9)	MSTB1|LTR|ERVL-MaLR	2102	NM_003844	8797		NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
80545	chr16	2783321	2783980	+	0	NA	TTS (NM_001385462)	TTS (NM_001385462)	3910	NM_001385462	260429		NM_152891	ENSG00000103355	PRSS33	EOS	serine protease 33	protein-coding
229298	chr9	120845001	120845600	+	0	NA	intron (NR_152406, intron 2 of 3)	intron (NR_152406, intron 2 of 3)	-1382	NR_152407	253039		NR_024408	ENSG00000293514	CUTALP	PSMD5-AS1	cutA divalent cation tolerance like, pseudogene	pseudo
30637	chr10	80450421	80450980	+	0	NA	Intergenic	Intergenic	-3610	NM_001351267	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
63041	chr13	112985151	112985450	+	0	NA	intron (NM_001320816, intron 1 of 29)	intron (NM_001320816, intron 1 of 29)	5934	NM_001320816	23263		NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding
98735	chr17	48027651	48028130	+	0	NA	intron (NM_016429, intron 8 of 8)	intron (NM_016429, intron 8 of 8)	-4992	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
225181	chr9	33925051	33925500	+	0	NA	intron (NR_163243, intron 18 of 24)	intron (NR_163243, intron 18 of 24)	9089	NM_001282530	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
237071	chrX	103674601	103675230	+	0	NA	TTS (NM_012286)	TTS (NM_012286)	11784	NM_012286	9643		NM_012286	ENSG00000123562	MORF4L2	MORFL2|MRGX	mortality factor 4 like 2	protein-coding
195204	chr6	36117121	36117380	+	0	NA	Intergenic	Intergenic	-13263	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
84257	chr16	30027151	30027550	+	0	NA	intron (NM_001353379, intron 4 of 4)	MIR|SINE|MIR	2734	NM_001318504	83723		NM_031478	ENSG00000149926	TLCD3B	CORD22|FAM57B|FP1188	TLC domain containing 3B	protein-coding
36483	chr11	6258651	6260530	+	0	NA	promoter-TSS (NM_001318029)	promoter-TSS (NM_001318029)	-248	NM_001318029	887		NM_176875	ENSG00000110148	CCKBR	CCK-2R|CCK-B|CCK2R|GASR	cholecystokinin B receptor	protein-coding
223821	chr8	144852251	144853900	+	0	NA	promoter-TSS (NM_014066)	promoter-TSS (NM_014066)	-8	NM_001287237	28991		NM_014066	ENSG00000170619	COMMD5	HCARG|HT002	COMM domain containing 5	protein-coding
126205	chr2	26784121	26784580	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1665	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
120342	chr19	43570021	43570600	+	0	NA	intron (NM_006297, intron 2 of 16)	intron (NM_006297, intron 2 of 16)	5217	NM_006297	7515		NM_006297	ENSG00000073050	XRCC1	RCC|SCAR26	X-ray repair cross complementing 1	protein-coding
92900	chr17	16449001	16449650	+	0	NA	intron (NM_001113567, intron 2 of 3)	MIR|SINE|MIR	8099	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
2164	chr1	8427251	8428450	+	0	NA	intron (NR_125999, intron 1 of 3)	intron (NR_125999, intron 1 of 3)	3205	NR_125999	102724552		NR_125999		RERE-AS1	-	RERE antisense RNA 1	ncRNA
5922	chr1	26851971	26852330	+	0	NA	intron (NM_032283, intron 6 of 7)	MER103C|DNA|hAT-Charlie	-10999	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
37286	chr11	14711621	14712280	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	68146	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
40050	chr11	62714601	62715680	+	0	NA	3' UTR (NM_001079559, exon 14 of 14)	3' UTR (NM_001079559, exon 14 of 14)	-5521	NR_037949								
32270	chr10	102069371	102069880	+	0	NA	Intergenic	Intergenic	4276	NM_024747	79803		NM_024747	ENSG00000166189	HPS6	BLOC2S3	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding
33964	chr10	124644871	124645900	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-58643	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
130679	chr2	86445371	86445730	+	0	NA	intron (NM_001146688, intron 2 of 25)	intron (NM_001146688, intron 2 of 25)	4089	NM_001146688	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
200677	chr6	137223851	137224230	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-4655	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
88782	chr16	87319871	87320430	+	0	NA	Intergenic	Intergenic	2641	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
161272	chr3	39276601	39277000	+	0	NA	intron (NM_001171174, intron 1 of 1)	L1ME3B|LINE|L1	3236	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
188757	chr5	157577271	157577630	+	0	NA	Intergenic	MER4A1_|LTR|ERV1	-1675	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
233456	chr9	137649601	137649800	+	0	NA	intron (NM_001354612, intron 1 of 8)	MLT1C|LTR|ERVL-MaLR	30695	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
222058	chr8	130304501	130304980	+	0	NA	intron (NM_001362924, intron 3 of 30)	L2a|LINE|L2	-8207	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
127840	chr2	45014021	45014330	+	0	NA	Intergenic	CpG	-4723	NM_016932	10736		NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
70171	chr14	100324671	100325030	+	0	NA	intron (NM_001350877, intron 1 of 5)	L2c|LINE|L2	1511	NM_001350877	283600		NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDCMP|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
28535	chr10	50511121	50512230	+	0	NA	intron (NM_147156, intron 3 of 10)	MamTip2|DNA|hAT-Tip100	112281	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
214572	chr7	150608271	150608630	+	0	NA	Intergenic	L1P1|LINE|L1	23935	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
127375	chr2	39432021	39432350	+	0	NA	intron (NM_003618, intron 1 of 33)	intron (NM_003618, intron 1 of 33)	5100	NM_003618	8491		NM_003618	ENSG00000011566	MAP4K3	GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding
226445	chr9	71694171	71694530	+	0	NA	intron (NM_001135820, intron 20 of 22)	AluY|SINE|Alu	74163	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
25122	chr10	4020721	4020980	+	0	NA	Intergenic	Intergenic	29690	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
190988	chr6	3026801	3027550	+	0	NA	non-coding (NR_152848, exon 3 of 3)	non-coding (NR_152848, exon 3 of 3)	3112	NR_152848	101927759		NR_132750		LOC101927759	-	uncharacterized LOC101927759	ncRNA
193693	chr6	31118221	31118680	+	0	NA	intron (NM_001264, intron 1 of 1)	intron (NM_001264, intron 1 of 1)	1996	NM_001264	1041		NM_001264	ENSG00000204539	CDSN	HTSS|HTSS1|HYPT2|PSS|PSS1	corneodesmosin	protein-coding
54354	chr12	89697951	89698250	+	0	NA	intron (NM_001366520, intron 1 of 21)	AluSz|SINE|Alu	10738	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
19088	chr1	171188671	171188870	+	0	NA	intron (NM_001460, intron 2 of 8)	intron (NM_001460, intron 2 of 8)	3470	NM_001301347	2327		NM_001460	ENSG00000094963	FMO2	FMO1B1	flavin containing dimethylaniline monoxygenase 2	protein-coding
106932	chr18	26307271	26307430	+	0	NA	intron (NR_121653, intron 10 of 15)	intron (NR_121653, intron 10 of 15)	80905	NM_005640	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
212338	chr7	127417171	127417630	+	0	NA	Intergenic	Intergenic	-24692	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
135700	chr2	168920601	168920980	+	0	NA	TTS (NM_003742).2	TTS (NM_003742).2	19499	NM_001081686	57818		NM_021176	ENSG00000152254	G6PC2	IGRP	glucose-6-phosphatase catalytic subunit 2	protein-coding
203543	chr7	879651	879750	+	0	NA	intron (NM_015949, intron 1 of 8)	intron (NM_015949, intron 1 of 8)	3146	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
16253	chr1	153967081	153968430	+	0	NA	promoter-TSS (NM_130898)	promoter-TSS (NM_130898)	-30	NM_014437	27173		NM_014437	ENSG00000143570	SLC39A1	ZIP1|ZIRTL	solute carrier family 39 member 1	protein-coding
30720	chr10	81876201	81876400	+	0	NA	intron (NM_001370081, intron 1 of 8)	intron (NM_001370081, intron 1 of 8)	986	NM_001165972	10718		NM_001010848	ENSG00000185737	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding
236234	chrX	65722021	65723010	+	0	NA	intron (NM_002444, intron 2 of 12)	AluJb|SINE|Alu	54861	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
17456	chr1	156699851	156700400	+	0	NA	intron (NM_001878, intron 3 of 3)	intron (NM_001878, intron 3 of 3)	5458	NM_001878	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
18397	chr1	161407921	161408180	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-40174	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
70878	chr14	103844371	103844980	+	0	NA	intron (NM_015316, intron 1 of 16)	AluSx1|SINE|Alu	2900	NM_015316	23368		NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
96389	chr17	40125571	40125730	+	0	NA	intron (NM_001365920, intron 1 of 7)	AluSq4|SINE|Alu	3679	NM_001365919	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
121344	chr19	46790721	46790980	+	0	NA	Intergenic	AluY|SINE|Alu	-2256	NM_005628	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
183878	chr5	87278321	87278580	+	0	NA	intron (NM_022650, intron 1 of 24)	AluY|SINE|Alu	9513	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
129939	chr2	73827021	73827600	+	0	NA	Intergenic	Intergenic	-1601	NM_001353969	10617		NM_006463	ENSG00000124356	STAMBP	AMSH|MICCAP	STAM binding protein	protein-coding
57624	chr12	122503871	122504030	+	0	NA	non-coding (NR_036435, exon 11 of 11)	non-coding (NR_036435, exon 11 of 11)	-3018	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
46648	chr11	128693611	128695300	+	0	NA	intron (NM_001271010, intron 1 of 9)	CpG	383	NM_002017	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
94466	chr17	29262921	29263330	+	0	NA	3' UTR (NM_020772, exon 4 of 4)	3' UTR (NM_020772, exon 4 of 4)	16266	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
66759	chr14	64521651	64521950	+	0	NA	exon (NM_014950, exon 2 of 3)	exon (NM_014950, exon 2 of 3)	-16587	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
160274	chr3	25788571	25789050	+	0	NA	intron (NM_001145294, intron 1 of 11)	intron (NM_001145294, intron 1 of 11)	1229	NM_001145294	55768		NM_018297	ENSG00000151092	NGLY1	CDDG|CDG1V|PNG-1|PNG1|PNGase	N-glycanase 1	protein-coding
128229	chr2	54116751	54116950	+	0	NA	intron (NM_138448, intron 1 of 3)	LTR10A|LTR|ERV1	1235	NM_001320589	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
192545	chr6	25265621	25265950	+	0	NA	Intergenic	Intergenic	-4378	NR_110862	101928663		NR_110862		LOC101928663	-	uncharacterized LOC101928663	ncRNA
182086	chr5	55993021	55993280	+	0	NA	intron (NR_157112, intron 1 of 17)	intron (NR_157112, intron 1 of 17)	1813	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
75229	chr15	64857951	64858500	+	0	NA	intron (NM_001195059, intron 2 of 4)	intron (NM_001195059, intron 2 of 4)	16310	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
71221	chr14	105163421	105164000	+	0	NA	intron (NM_002226, intron 2 of 25)	intron (NM_002226, intron 2 of 25)	5066	NM_002226	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
169471	chr3	169149251	169149750	+	0	NA	intron (NM_001205194, intron 1 of 15)	CpG	-2029	NM_001366469	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
206039	chr7	27097801	27098200	+	0	NA	intron (NR_038367, intron 1 of 1)	intron (NR_038367, intron 1 of 1)	1906	NR_038367	100506311		NR_038366	ENSG00000233429	HOTAIRM1	HOXA-AS1|HOXA1-AS1|NCRNA00179	HOXA transcript antisense RNA, myeloid-specific 1	ncRNA
136037	chr2	172482371	172482530	+	0	NA	intron (NM_001316306, intron 11 of 25)	intron (NM_001316306, intron 11 of 25)	-16428	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
157534	chr22	45419851	45420350	+	0	NA	intron (NM_015653, intron 3 of 6)	L2a|LINE|L2	6407	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
193794	chr6	31423151	31423880	+	0	NA	Intergenic	LTR9D|LTR|ERV1	-18152	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
141316	chr2	240455301	240456750	+	0	NA	promoter-TSS (NR_029702)	promoter-TSS (NR_029702)	24	NR_029702	406941		NR_029702	ENSG00000207611	MIR149	MIRN149|mir-149	microRNA 149	ncRNA
161129	chr3	38453021	38454830	+	0	NA	promoter-TSS (NM_001106)	promoter-TSS (NM_001106)	35	NM_001106	93		NM_001106	ENSG00000114739	ACVR2B	ACTRIIB|ActR-IIB|HTX4	activin A receptor type 2B	protein-coding
98103	chr17	45609551	45609850	+	0	NA	Intergenic	AluJb|SINE|Alu	-7838	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
221023	chr8	116678251	116678950	+	0	NA	intron (NM_003756, intron 2 of 7)	SVA_D|Retroposon|SVA	26500	NR_136278	105375713		NR_136278	ENSG00000289382	LOC105375713	-	uncharacterized LOC105375713	ncRNA
95126	chr17	35008471	35008630	+	0	NA	TTS (NR_037714)	TTS (NR_037714)	28038	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
214465	chr7	150358301	150358650	+	0	NA	Intergenic	Intergenic	-9621	NM_001362746	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
35419	chr11	1418171	1418950	+	0	NA	intron (NM_001256630, intron 1 of 19)	intron (NM_001256630, intron 1 of 19)	7408	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
215063	chr7	152823021	152823630	+	0	NA	intron (NM_001350942, intron 7 of 11)	intron (NM_001350942, intron 7 of 11)	63573	NM_020445	57180		NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	actin related protein 3B	protein-coding
45487	chr11	118609401	118610300	+	0	NA	intron (NM_001144759, intron 1 of 20)	CpG	2235	NM_001144759	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
31411	chr10	95560471	95561830	+	0	NA	intron (NM_001384456, intron 1 of 27)	CpG	221	NM_001384465	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
229032	chr9	114321271	114321600	+	0	NA	Intergenic	AluJr|SINE|Alu	-1663	NM_000607	5004		NM_000607	ENSG00000229314	ORM1	A1AG1|AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
148386	chr20	63902571	63903580	+	0	NA	intron (NM_025219, intron 1 of 4)	AluJo|SINE|Alu	7949	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
72954	chr15	40456801	40457430	+	0	NA	intron (NR_125372, intron 1 of 4)	intron (NR_125372, intron 1 of 4)	-13869	NM_130468	113189		NM_130468	ENSG00000169105	CHST14	ATCS|D4ST1|EDSMC1|HNK1ST	carbohydrate sulfotransferase 14	protein-coding
88586	chr16	85576621	85576880	+	0	NA	Intergenic	Intergenic	-34659	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
67551	chr14	71254871	71255050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-65516	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
236380	chrX	71097121	71097580	+	0	NA	intron (NM_005938, intron 1 of 2)	intron (NM_005938, intron 1 of 2)	1499	NM_001170931	4303		NM_005938	ENSG00000184481	FOXO4	AFX|AFX1|MLLT7	forkhead box O4	protein-coding
1602	chr1	3651051	3651750	+	0	NA	Intergenic	CpG-291	-1116	NM_001204184	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
37962	chr11	34648721	34649650	+	0	NA	intron (NR_165390, intron 4 of 8)	intron (NR_165390, intron 4 of 8)	6813	NM_001378046	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
202695	chr6	158807551	158808050	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-10179	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
194325	chr6	32842701	32842900	+	0	NA	intron (NM_148919, intron 2 of 5).4	intron (NM_148919, intron 2 of 5).4	1247	NM_148919	5696		NM_004159	ENSG00000204264	PSMB8	ALDD|D6S216|D6S216E|JMP|LMP7|NKJO|PRAAS1|PSMB5i|RING10	proteasome 20S subunit beta 8	protein-coding
180207	chr5	1507251	1507750	+	0	NA	intron (NM_024830, intron 1 of 13)	L1MC5a|LINE|L1	3356	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
24462	chr1	243865321	243865800	+	0	NA	Intergenic	AluSc|SINE|Alu	-14481	NM_001370074	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
219352	chr8	70328951	70329050	+	0	NA	intron (NM_001321703, intron 1 of 22)	AluJr4|SINE|Alu	74390	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
215369	chr7	157400901	157401100	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	63996	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
161994	chr3	46370871	46371300	+	0	NA	intron (NM_001100168, intron 2 of 2)	intron (NM_001100168, intron 2 of 2)	943	NM_001100168	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
190549	chr5	180790021	180790500	+	0	NA	TTS (NM_001114620)	TTS (NM_001114620)	12546	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
42365	chr11	68690601	68691530	+	0	NA	3' UTR (NM_015973, exon 6 of 6)	3' UTR (NM_015973, exon 6 of 6)	6521	NM_015973	51083		NM_015973	ENSG00000069482	GAL	ETL8|GAL-GMAP|GALN|GLNN|GMAP	galanin and GMAP prepropeptide	protein-coding
177758	chr4	122663771	122664330	+	0	NA	intron (NR_104126, intron 10 of 10)	intron (NR_104126, intron 10 of 10)	-42984	NM_021803	59067		NM_021803	ENSG00000138684	IL21	CVID11|IL-21|Za11	interleukin 21	protein-coding
144181	chr20	34108651	34109250	+	0	NA	intron (NM_003908, intron 1 of 8)	AluJo|SINE|Alu	3293	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
39957	chr11	62567001	62567680	+	0	NA	promoter-TSS (NR_106805)	promoter-TSS (NR_106805)	-269	NR_106805	102465447		NR_106805	ENSG00000276102	MIR6747	hsa-mir-6747	microRNA 6747	ncRNA
221329	chr8	123085501	123086680	+	0	NA	intron (NM_145647, intron 4 of 21)	MIRb|SINE|MIR	12841	NM_001363149	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
119704	chr19	41126471	41127380	+	0	NA	intron (NR_135528, intron 9 of 9)	intron (NR_135528, intron 9 of 9)	12493	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
129751	chr2	70984601	70985600	+	0	NA	TTS (NM_144582)	TTS (NM_144582)	6470	NM_024933	79998		NM_024933	ENSG00000144031	ANKRD53	-	ankyrin repeat domain 53	protein-coding
192827	chr6	27120771	27121230	+	0	NA	Intergenic	L1M5|LINE|L1	11795	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
83201	chr16	23514601	23515730	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-4671	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
217590	chr8	29540821	29541080	+	0	NA	Intergenic	Intergenic	-190266	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
2706	chr1	10646851	10646950	+	0	NA	TTS (NM_017766)	TTS (NM_017766)	149746	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
107091	chr18	35042201	35043880	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	1627	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
206333	chr7	30317221	30317950	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-27695	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
176148	chr4	83185171	83185330	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-70521	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
228244	chr9	97979871	97980230	+	0	NA	Intergenic	Intergenic	-3291	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
15832	chr1	151343371	151343530	+	0	NA	intron (NM_001379412, intron 9 of 10)	intron (NM_001379412, intron 9 of 10)	3406	NM_001379416	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
187734	chr5	143433321	143433930	+	0	NA	intron (NM_001018075, intron 1 of 8)	L2a|LINE|L2	1184	NM_001364183	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
54633	chr12	92827901	92828150	+	0	NA	exon (NM_003566, exon 12 of 29)	exon (NM_003566, exon 12 of 29)	101270	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
42390	chr11	68892271	68892580	+	0	NA	intron (NM_181514, intron 6 of 6)	CpG	11407	NM_181514	219927		NM_181512	ENSG00000197345	MRPL21	L21mt|MRP-L21|bL21m	mitochondrial ribosomal protein L21	protein-coding
64370	chr14	24131401	24131600	+	0	NA	promoter-TSS (NM_203402)	promoter-TSS (NM_203402)	34	NM_203402	161247		NM_203402	ENSG00000139914	FITM1	FIT1	fat storage inducing transmembrane protein 1	protein-coding
132941	chr2	111449551	111449930	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	45421	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
2534	chr1	9722901	9723100	+	0	NA	intron (NM_001350234, intron 19 of 23)	intron (NM_001350234, intron 19 of 23)	31533	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
195429	chr6	36955551	36956480	+	0	NA	intron (NM_153370, intron 1 of 6)	MIRc|SINE|MIR	1277	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
130697	chr2	86562651	86563950	+	0	NA	intron (NM_001198954, intron 3 of 7)	CpG	143	NM_001193517	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
154180	chr22	31330451	31330550	+	0	NA	intron (NM_014323, intron 3 of 4)	AluY|SINE|Alu	-4849	NR_110542	101929760		NR_110542	ENSG00000228839	PIK3IP1-DT	PIK3IP1-AS1	PIK3IP1 divergent transcript	ncRNA
12766	chr1	109636701	109637150	+	0	NA	Intergenic	Intergenic	12937	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
200699	chr6	137363351	137364050	+	0	NA	Intergenic	Intergenic	130694	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
231638	chr9	131595921	131596380	+	0	NA	intron (NM_001377935, intron 17 of 26)	intron (NM_001377935, intron 17 of 26)	50627	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
238435	chrX	151082301	151082700	+	0	NA	Intergenic	CpG	-85722	NR_036256	100422930		NR_036256	ENSG00000265789	MIR4330	-	microRNA 4330	ncRNA
179905	chr5	682451	683130	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	10562	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
3046	chr1	12154321	12154580	+	0	NA	Intergenic	AluY|SINE|Alu	-12493	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
79093	chr16	183671	183930	+	0	NA	Intergenic	L1MB3|LINE|L1	3341	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
119603	chr19	40754521	40755700	+	0	NA	intron (NM_004596, intron 1 of 5)	AluSx1|SINE|Alu	3907	NM_004596	6626		NM_004596	ENSG00000077312	SNRPA	Mud1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding
9818	chr1	53916321	53916780	+	0	NA	TTS (NM_001382261)	TTS (NM_001382261)	22363	NM_213593	1733		NM_000792	ENSG00000211452	DIO1	5DI|THMA2|TXDI1	iodothyronine deiodinase 1	protein-coding
69297	chr14	93104871	93105030	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	10975	NM_001142594	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
17305	chr1	156449901	156450280	+	0	NA	Intergenic	AluJb|SINE|Alu	-20542	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
91613	chr17	5381721	5382180	+	0	NA	intron (NM_001083585, intron 16 of 16)	L2c|LINE|L2	-37691	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
232191	chr9	134301601	134302430	+	0	NA	Intergenic	Intergenic	-6618	NR_146518	105376310		NR_146518	ENSG00000223729	LINC02247	-	long intergenic non-protein coding RNA 2247	ncRNA
179655	chr4	189491401	189491800	+	0	NA	Intergenic	Intergenic	-168006	NR_121679	101928971		NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
108738	chr18	77101251	77103150	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	30583	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
43504	chr11	78586501	78586730	+	0	NA	Intergenic	Intergenic	-11751	NM_001243251	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
27689	chr10	33128451	33128750	+	0	NA	Intergenic	AluY|SINE|Alu	-11793	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
47706	chr12	6446201	6446400	+	0	NA	intron (NM_001242, intron 2 of 5)	intron (NM_001242, intron 2 of 5)	1345	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
8552	chr1	41268201	41268630	+	0	NA	Intergenic	Intergenic	-26109	NM_012236	22955		NM_012236	ENSG00000010803	SCMH1	Scml3	Scm polycomb group protein homolog 1	protein-coding
57977	chr12	123994951	123995250	+	0	NA	intron (NM_001204298, intron 3 of 4)	MIRb|SINE|MIR	21885	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
4469	chr1	21368251	21368900	+	0	NA	Intergenic	(CCTT)n|Simple_repeat|Simple_repeat	-23071	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
6267	chr1	27579101	27579700	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	24094	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
119953	chr19	41878851	41879480	+	0	NA	exon (NM_001783, exon 2 of 5)	exon (NM_001783, exon 2 of 5)	1886	NM_001783	973		NM_001783	ENSG00000105369	CD79A	IGA|IGAlpha|MB-1|MB1	CD79a molecule	protein-coding
136210	chr2	174576051	174576150	+	0	NA	intron (NM_001375837, intron 3 of 4)	AluJo|SINE|Alu	-18028	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
65193	chr14	49632501	49633100	+	0	NA	intron (NM_018139, intron 1 of 2)	intron (NM_018139, intron 1 of 2)	1186	NM_001378453	55172		NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
39435	chr11	60913691	60915000	+	0	NA	intron (NM_024092, intron 1 of 3)	CpG	187	NM_024092	79073		NM_024092	ENSG00000110108	TMEM109	SND3|hSND3	transmembrane protein 109	protein-coding
128047	chr2	47571001	47571600	+	0	NA	promoter-TSS (NM_022055)	promoter-TSS (NM_022055)	-315	NM_022055	56660		NM_022055	ENSG00000184261	KCNK12	K2p12.1|THIK-2|THIK2	potassium two pore domain channel subfamily K member 12	protein-coding
80458	chr16	2683851	2684150	+	0	NA	intron (NM_018992, intron 1 of 5)	intron (NM_018992, intron 1 of 5)	1477	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
203270	chr6	169704971	169705130	+	0	NA	3' UTR (NM_001029863, exon 1 of 1)	3' UTR (NM_001029863, exon 1 of 1)	2924	NM_001317342	387263		NM_001029863	ENSG00000185127	C6orf120	-	chromosome 6 open reading frame 120	protein-coding
187633	chr5	143000901	143001100	+	0	NA	intron (NR_146198, intron 11 of 22)	L1PA8|LINE|L1	-132090	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
171523	chr3	196670351	196670650	+	0	NA	Intergenic	Intergenic	30806	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
39612	chr11	61391021	61391500	+	0	NA	Intergenic	(G)n|Simple_repeat|Simple_repeat	-1100	NM_001330285	51259		NM_016499	ENSG00000187049	TMEM216	HSPC244	transmembrane protein 216	protein-coding
126182	chr2	26609901	26610300	+	0	NA	intron (NM_001029881, intron 3 of 6)	intron (NM_001029881, intron 3 of 6)	31266	NM_001029881	130106		NM_001029881	ENSG00000157884	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
209566	chr7	77352971	77353530	+	0	NA	intron (NR_146937, intron 17 of 31)	intron (NR_146937, intron 17 of 31)	-61948	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
201290	chr6	144327871	144328030	+	0	NA	intron (NM_007124, intron 1 of 73)	(ACAAA)n|Simple_repeat|Simple_repeat	36213	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
81483	chr16	8937371	8937680	+	0	NA	promoter-TSS (NM_001286458)	promoter-TSS (NM_001286458)	-886	NM_001286457	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
211414	chr7	105047051	105047430	+	0	NA	intron (NM_182931, intron 3 of 26)	MER68|LTR|ERVL	33035	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
181866	chr5	54229271	54229700	+	0	NA	intron (NM_019087, intron 1 of 4)	intron (NM_019087, intron 1 of 4)	81088	NM_019087	54622		NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
63457	chr13	114127501	114127700	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	5023	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
183657	chr5	80271551	80272050	+	0	NA	Intergenic	Intergenic	-15752	NR_126060	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
35843	chr11	2309451	2310000	+	0	NA	intron (NM_139022, intron 4 of 9)	intron (NM_139022, intron 4 of 9)	-6585	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
147206	chr20	57378621	57379150	+	0	NA	TTS (NM_001015885)	TTS (NM_001015885)	-12511	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
170626	chr3	187023201	187023400	+	0	NA	intron (NM_003032, intron 1 of 6)	L2a|LINE|L2	1445	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
239187	chrY	12627351	12627450	+	0	NA	Intergenic	L1PA6|LINE|L1	-34967	NR_001545	64595		NR_001545	ENSG00000114374	TTTY15	NCRNA00138	testis expressed transcript, Y-linked 15	ncRNA
109189	chr19	381831	382200	+	0	NA	Intergenic	Intergenic	-5989	NM_016585	51298		NM_016585	ENSG00000105549	SPMAP2	CT56|THEG|THEG1	sperm microtubule associated protein 2	protein-coding
218484	chr8	51901151	51901530	+	0	NA	Intergenic	AluSz|SINE|Alu	-2154	NM_001286782	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
1639	chr1	3778821	3779080	+	0	NA	3' UTR (NM_020710, exon 7 of 7)	3' UTR (NM_020710, exon 7 of 7)	6201	NM_001163724	388588		NM_001163724	ENSG00000235169	SMIM1	Vel	small integral membrane protein 1 (Vel blood group)	protein-coding
153426	chr22	25054721	25055580	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	27176	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
21604	chr1	206559071	206559980	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	2361	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
98078	chr17	45574771	45575530	+	0	NA	Intergenic	Intergenic	26712	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
116315	chr19	17794471	17795680	+	0	NA	promoter-TSS (NM_014256)	promoter-TSS (NM_014256)	-63	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
156395	chr22	41110971	41111130	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluSz|SINE|Alu	18458	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
76742	chr15	76335851	76336050	+	0	NA	promoter-TSS (NM_145805)	promoter-TSS (NM_145805)	-823	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
80810	chr16	3454601	3455150	+	0	NA	intron (NM_001317093, intron 2 of 6)	intron (NM_001317093, intron 2 of 6)	-3170	NM_001317094	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
13125	chr1	111642221	111642900	+	0	NA	intron (NM_001010935, intron 2 of 8)	AluY|SINE|Alu	-22162	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
68645	chr14	89946051	89946150	+	0	NA	intron (NM_145231, intron 3 of 5)	AluSz6|SINE|Alu	8436	NM_001284268	90141		NM_145231	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
183907	chr5	87384951	87385330	+	0	NA	intron (NM_022650, intron 21 of 24)	intron (NM_022650, intron 21 of 24)	27764	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
179532	chr4	184961451	184962180	+	0	NA	Intergenic	Intergenic	-23375	NR_039660	100616111		NR_039660	ENSG00000263458	MIR4455	-	microRNA 4455	ncRNA
92402	chr17	8339171	8339330	+	0	NA	promoter-TSS (NM_153007)	promoter-TSS (NM_153007)	-590	NM_001319953	146852		NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
84531	chr16	30523851	30524250	+	0	NA	TTS (NM_001114380)	TTS (NM_001114380)	2516	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
44234	chr11	96426601	96427200	+	0	NA	Intergenic	Intergenic	36887	NM_001261833	8690		NM_003772	ENSG00000183340	JRKL	HHMJG	JRK like	protein-coding
199960	chr6	127938351	127939150	+	0	NA	Intergenic	Intergenic	-20119	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
26000	chr10	12112621	12113180	+	0	NA	exon (NM_018706, exon 13 of 17)	exon (NM_018706, exon 13 of 17)	-16741	NM_001142628	55176		NM_018144	ENSG00000065665	SEC61A2	-	SEC61 translocon subunit alpha 2	protein-coding
148501	chr20	64073521	64074380	+	0	NA	exon (NM_005873, exon 6 of 6)	exon (NM_005873, exon 6 of 6)	3060	NR_106871	102466741		NR_106871	ENSG00000274034	MIR6813	hsa-mir-6813	microRNA 6813	ncRNA
3321	chr1	15415421	15416500	+	0	NA	intron (NM_024329, intron 1 of 3)	intron (NM_024329, intron 1 of 3)	6072	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
212790	chr7	130142871	130143230	+	0	NA	TTS (NR_149033)	TTS (NR_149033)	1319	NR_149034	100128325		NR_149033	ENSG00000229196	LINC03008	-	long intergenic non-protein coding RNA 3008	ncRNA
85966	chr16	57294951	57295050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10328	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
166212	chr3	112013201	112013900	+	0	NA	exon (NM_013259, exon 5 of 5)	exon (NM_013259, exon 5 of 5)	14390	NM_001008273	29114		NM_013259	ENSG00000144834	TAGLN3	NP22|NP24|NP25	transgelin 3	protein-coding
99707	chr17	50862901	50863670	+	0	NA	exon (NM_001243877, exon 3 of 3)	exon (NM_001243877, exon 3 of 3)	3069	NM_001243885	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
172558	chr4	2410571	2411100	+	0	NA	intron (NM_020972, intron 1 of 12)	L1MB5|LINE|L1	7810	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
30838	chr10	86418971	86419380	+	0	NA	Intergenic	L1MC1|LINE|L1	-52380	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
89855	chr16	89603901	89604780	+	0	NA	Intergenic	Intergenic	-8968	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
106164	chr18	9927371	9928030	+	0	NA	intron (NM_194434, intron 1 of 5)	intron (NM_194434, intron 1 of 5)	13684	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
204691	chr7	5508771	5509330	+	0	NA	intron (NM_024963, intron 1 of 4)	AluSx|SINE|Alu	4759	NM_001363441	80028		NM_024963	ENSG00000155034	FBXL18	Fbl18	F-box and leucine rich repeat protein 18	protein-coding
193288	chr6	30064021	30064280	+	0	NA	intron (NM_170783, intron 3 of 3)	intron (NM_170783, intron 3 of 3)	2885	NR_103864	30834		NM_014596	ENSG00000066379	POLR1H	A12.2|HTEX-6|HTEX6|Rpa12|TCTEX6|TEX6|ZNRD1|ZR14|hZR14|tctex-6	RNA polymerase I subunit H	protein-coding
192321	chr6	21926071	21926230	+	0	NA	intron (NR_015410, intron 5 of 11)	intron (NR_015410, intron 5 of 11)	221043	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
166983	chr3	125762621	125763150	+	0	NA	Intergenic	Intergenic	-11829	NR_153417	105374312		NR_153417	ENSG00000272840	LOC105374312	-	uncharacterized LOC105374312	ncRNA
7342	chr1	32743121	32743530	+	0	NA	intron (NM_020888, intron 1 of 6)	intron (NM_020888, intron 1 of 6)	1495	NM_020888	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
48804	chr12	12005921	12006180	+	0	NA	Intergenic	AluYc|SINE|Alu	-43811	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
63935	chr14	22047051	22047800	+	0	NA	Intergenic	Intergenic	-376408	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
76308	chr15	74375171	74375800	+	0	NA	Intergenic	Intergenic	-3597	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
18027	chr1	160576471	160577430	+	0	NA	intron (NM_003874, intron 1 of 6)	intron (NM_003874, intron 1 of 6)	2546	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
213158	chr7	131555001	131555200	+	0	NA	intron (NM_005397, intron 1 of 7)	intron (NM_005397, intron 1 of 7)	1528	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
50166	chr12	45974901	45975300	+	0	NA	intron (NM_004719, intron 1 of 14)	Tigger1|DNA|TcMar-Tigger	15474	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
140189	chr2	231672451	231673500	+	0	NA	Intergenic	Intergenic	-35550	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
94280	chr17	28713871	28714030	+	0	NA	TTS (NM_001256276)	TTS (NM_001256276)	-2062	NM_152465	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
194541	chr6	33316981	33319330	+	0	NA	promoter-TSS (NM_001145338)	promoter-TSS (NM_001145338)	-213	NM_001145338	9278		NM_005453	ENSG00000236104	ZBTB22	BING1|ZBTB22A|ZNF297|ZNF297A|fru|fruitless	zinc finger and BTB domain containing 22	protein-coding
212461	chr7	128458051	128458150	+	0	NA	3' UTR (NM_001098786, exon 2 of 2)	3' UTR (NM_001098786, exon 2 of 2)	2222	NM_013332	29923		NM_013332	ENSG00000135245	HILPDA	C7orf68|HIG-2|HIG2	hypoxia inducible lipid droplet associated	protein-coding
78729	chr15	98699171	98699330	+	0	NA	intron (NM_000875, intron 1 of 20)	intron (NM_000875, intron 1 of 20)	-48029	NR_126453	104472848		NR_126453		IRAIN	IGF1R-AS|IGF1RAS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
163974	chr3	53044151	53045800	+	0	NA	intron (NM_016329, intron 1 of 20)	CpG	1098	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
44452	chr11	104916221	104916880	+	0	NA	intron (NR_034078, intron 1 of 4)	intron (NR_034078, intron 1 of 4)	1625	NR_034079	643733		NR_034078	ENSG00000291173	CASP4LP	CASP17P	caspase 4 like, pseudogene	pseudo
157086	chr22	42620351	42620780	+	0	NA	intron (NM_001129819, intron 8 of 8)	intron (NM_001129819, intron 8 of 8)	5320	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
158500	chr3	3028051	3028550	+	0	NA	intron (NM_001206956, intron 6 of 15)	intron (NM_001206956, intron 6 of 15)	32845	NR_046554	100873975		NR_046554		CNTN4-AS1	-	CNTN4 antisense RNA 1	ncRNA
182534	chr5	65633251	65633450	+	0	NA	intron (NM_001365343, intron 1 of 10)	AluYc3|SINE|Alu	8323	NM_024941	80006		NM_024941	ENSG00000113597	TRAPPC13	C5orf44|SHLD3	trafficking protein particle complex subunit 13	protein-coding
22406	chr1	219991101	219991300	+	0	NA	intron (NM_004446, intron 18 of 31)	intron (NM_004446, intron 18 of 31)	-32102	NM_001376929	55532		NM_018713	ENSG00000196660	SLC30A10	HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10	solute carrier family 30 member 10	protein-coding
30131	chr10	74051901	74052300	+	0	NA	intron (NM_014000, intron 2 of 21)	MER66B|LTR|ERV1	53984	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
22355	chr1	214637721	214638000	+	0	NA	intron (NM_016343, intron 10 of 19)	intron (NM_016343, intron 10 of 19)	34665	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
23835	chr1	234604751	234605280	+	0	NA	3' UTR (NM_001077397, exon 2 of 2)	3' UTR (NM_001077397, exon 2 of 2)	4510	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
79475	chr16	745851	745950	+	0	NA	Intergenic	Intergenic	-4903	NM_001304799	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
134945	chr2	151636901	151637700	+	0	NA	intron (NM_001164508, intron 63 of 181)	L2b|LINE|L2	97176	NM_001271208	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
136804	chr2	181681701	181681900	+	0	NA	Intergenic	Intergenic	-1135	NR_146175	4760		NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|T2D|bHLHa3	neuronal differentiation 1	protein-coding
141537	chr2	241309451	241310430	+	0	NA	intron (NM_005336, intron 1 of 27)	HAL1|LINE|L1	-5247	NM_006155	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
196155	chr6	42455171	42455780	+	0	NA	Intergenic	AluJo|SINE|Alu	-3251	NM_033502	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
8140	chr1	39326771	39327330	+	0	NA	intron (NM_012090, intron 34 of 92)	intron (NM_012090, intron 34 of 92)	-82023	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
115101	chr19	14288401	14289630	+	0	NA	Intergenic	Intergenic	-44728	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
125154	chr2	10015201	10016050	+	0	NA	Intergenic	CpG	27776	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
152734	chr22	21687801	21688000	+	0	NA	intron (NM_148175, intron 13 of 20)	intron (NM_148175, intron 13 of 20)	21888	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
188700	chr5	157301821	157302080	+	0	NA	intron (NM_014376, intron 6 of 30)	intron (NM_014376, intron 6 of 30)	32626	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
4705	chr1	23148051	23148450	+	0	NA	intron (NM_033631, intron 1 of 4)	intron (NM_033631, intron 1 of 4)	20606	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
197745	chr6	87164671	87164980	+	0	NA	intron (NM_015021, intron 1 of 7)	AluSx3|SINE|Alu	9260	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
41945	chr11	67309571	67309730	+	0	NA	intron (NM_017857, intron 11 of 13)	intron (NM_017857, intron 11 of 13)	6120	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
237893	chrX	131729451	131729550	+	0	NA	intron (NR_152876, intron 8 of 9)	intron (NR_152876, intron 8 of 9)	101143	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
73795	chr15	48190971	48191130	+	0	NA	promoter-TSS (NM_001145668)	promoter-TSS (NM_001145668)	-615	NM_001145668	399697		NM_001145668	ENSG00000233932	CTXN2	-	cortexin 2	protein-coding
79323	chr16	566651	567650	+	0	NA	intron (NM_176677, intron 1 of 1)	intron (NM_176677, intron 1 of 1)	145	NM_176677	283948		NM_176677	ENSG00000257108	NHLRC4	-	NHL repeat containing 4	protein-coding
142185	chr20	2885171	2885330	+	0	NA	intron (NM_001385311, intron 1 of 20)	L1M4|LINE|L1	11769	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
163038	chr3	49858751	49859730	+	0	NA	3' UTR (NM_024046, exon 11 of 11)	3' UTR (NM_024046, exon 11 of 11)	-2676	NM_005879	10293		NM_005879	ENSG00000183763	TRAIP	RNF206|SCKL9|TRIP	TRAF interacting protein	protein-coding
36444	chr11	5624451	5625800	+	0	NA	intron (NM_021616, intron 1 of 7)	intron (NM_021616, intron 1 of 7)	124	NM_021616	53840		NM_021616	ENSG00000258659	TRIM34	IFP1|RNF21	tripartite motif containing 34	protein-coding
165702	chr3	102093121	102093380	+	0	NA	Intergenic	Intergenic	-70455	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
28114	chr10	43402951	43403330	+	0	NA	intron (NM_001098204, intron 1 of 3)	AluSz|SINE|Alu	4711	NM_001098206	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
200970	chr6	139291601	139293230	+	0	NA	promoter-TSS (NM_153235)	promoter-TSS (NM_153235)	-417	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
216285	chr8	12543071	12543650	+	0	NA	intron (NR_047662, intron 8 of 8)	intron (NR_047662, intron 8 of 8)	106347	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
14702	chr1	145925271	145925900	+	0	NA	TTS (NR_002328)	TTS (NR_002328)	-1246	NR_147182	105371260		NR_147182	ENSG00000234222	LIX1L-AS1	-	LIX1L antisense RNA 1	ncRNA
100018	chr17	57952521	57953080	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	2612	NM_001271875	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
150864	chr21	44091451	44091550	+	0	NA	intron (NM_003274, intron 18 of 22)	AluSc|SINE|Alu	-15899	NM_005049	5822		NM_005049	ENSG00000241945	PWP2	EHOC-17|PWP2H|UTP1	PWP2 small subunit processome component	protein-coding
191774	chr6	14123171	14123650	+	0	NA	intron (NM_001040280, intron 2 of 4)	intron (NM_001040280, intron 2 of 4)	5638	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
108390	chr18	69876571	69876930	+	0	NA	intron (NM_006566, intron 4 of 6)	MER21A|LTR|ERVL	71123	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
31150	chr10	90787971	90788130	+	0	NA	intron (NM_000872, intron 1 of 2)	intron (NM_000872, intron 1 of 2)	69989	NM_019859	3363		NM_000872	ENSG00000148680	HTR7	5-HT7	5-hydroxytryptamine receptor 7	protein-coding
73760	chr15	45458721	45459550	+	0	NA	Intergenic	L1ME4c|LINE|L1	26085	NR_030599	100126311		NR_030599	ENSG00000284386	MIR147B	MIRN147B|mir-147b	microRNA 147b	ncRNA
209598	chr7	77549621	77549880	+	0	NA	intron (NM_001131008, intron 1 of 17)	AluJr|SINE|Alu	11707	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
123403	chr19	53977151	53979030	+	0	NA	intron (NM_031895, intron 1 of 3)	intron (NM_031895, intron 1 of 3)	-4217	NR_030632	100126325		NR_030632	ENSG00000284583	MIR935	MIRN935|hsa-mir-935|mir-935	microRNA 935	ncRNA
95058	chr17	32659301	32659650	+	0	NA	intron (NM_015194, intron 16 of 21)	intron (NM_015194, intron 16 of 21)	172482	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
59582	chr13	27455151	27455830	+	0	NA	Intergenic	Intergenic	-4888	NM_001166263	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
152633	chr22	21467371	21469180	+	0	NA	intron (NM_001207052, intron 3 of 8)	CpG-18822	1105	NM_001207052	645426		NM_001207052	ENSG00000206140	TMEM191C	-	transmembrane protein 191C	protein-coding
47223	chr12	944851	944950	+	0	NA	intron (NR_123713, intron 1 of 13)	intron (NR_123713, intron 1 of 13)	4794	NM_001297422	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
111430	chr19	3799421	3800550	+	0	NA	intron (NM_002378, intron 1 of 13)	AluY|SINE|Alu	1814	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
96187	chr17	39738351	39739180	+	0	NA	promoter-TSS (NM_001242442)	promoter-TSS (NM_001242442)	-6	NM_001242442	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
181898	chr5	54579971	54580130	+	0	NA	Intergenic	Intergenic	62291	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
46426	chr11	126990371	126990600	+	0	NA	intron (NM_001161707, intron 1 of 13)	intron (NM_001161707, intron 1 of 13)	-1943	NR_036126	100422918		NR_036126	ENSG00000266215	MIR3167	-	microRNA 3167	ncRNA
18199	chr1	160861551	160861650	+	0	NA	intron (NM_001166664, intron 1 of 7)	AluSx|SINE|Alu	1287	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
42020	chr11	67420051	67422200	+	0	NA	exon (NM_020811, exon 8 of 9)	exon (NM_020811, exon 8 of 9)	5447	NM_001166222	57571		NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
191673	chr6	13456771	13457530	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	14913	NR_038459	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
14348	chr1	143988101	143988300	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-14681	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
143728	chr20	32320921	32321600	+	0	NA	intron (NM_004798, intron 5 of 8)	AluSx|SINE|Alu	-37071	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
1917	chr1	6468201	6468800	+	0	NA	exon (NM_001042664, exon 20 of 21)	exon (NM_001042664, exon 20 of 21)	-2305	NM_148966	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
66279	chr14	61377721	61378080	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	56457	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
83886	chr16	28950271	28952230	+	0	NA	exon (NM_032815, exon 1 of 8)	exon (NM_032815, exon 1 of 8)	253	NM_032815	84901		NM_032815	ENSG00000176953	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T cells 2 interacting protein	protein-coding
106505	chr18	20971271	20971430	+	0	NA	intron (NM_005406, intron 22 of 32)	(AC)n|Simple_repeat|Simple_repeat	140463	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
234195	chrX	12894071	12894330	+	0	NA	Intergenic	Intergenic	-12420	NM_138636	51311		NM_016610	ENSG00000101916	TLR8	CD288|IMD98|TLR-8|hTLR8	toll like receptor 8	protein-coding
199648	chr6	122397751	122398400	+	0	NA	Intergenic	Intergenic	-1476	NM_001135564	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
59318	chr13	24303801	24304000	+	0	NA	3' UTR (NM_001286793, exon 9 of 9)	3' UTR (NM_001286793, exon 9 of 9)	-3266	NM_001303138	338872		NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and TNF related 9	protein-coding
149018	chr21	14545701	14546900	+	0	NA	promoter-TSS (NM_022136)	promoter-TSS (NM_022136)	15	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
16773	chr1	155489271	155489730	+	0	NA	intron (NM_018489, intron 2 of 27)	AluYc|SINE|Alu	56320	NR_034180	645682		NR_034180	ENSG00000237872	POU5F1P4	OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1	POU class 5 homeobox 1 pseudogene 4	pseudo
190576	chr5	180873421	180873930	+	0	NA	Intergenic	Intergenic	-12399	NM_001172638	643836		NM_152283	ENSG00000196670	ZFP62	ZET|ZNF755	ZFP62 zinc finger protein	protein-coding
127918	chr2	46350251	46350650	+	0	NA	intron (NM_001430, intron 2 of 15)	intron (NM_001430, intron 2 of 15)	43717	NR_146999	105374582		NR_146999	ENSG00000228100	LINC01820	-	long intergenic non-protein coding RNA 1820	ncRNA
135686	chr2	168749551	168750050	+	0	NA	intron (NM_203463, intron 8 of 9)	MER66B|LTR|ERV1	36629	NR_045786	100861402		NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
12781	chr1	109711921	109712380	+	0	NA	promoter-TSS (NM_000851)	promoter-TSS (NM_000851)	-101	NM_000851	2949		NM_000851	ENSG00000134201	GSTM5	GSTM5-5|GTM5	glutathione S-transferase mu 5	protein-coding
158033	chr22	49925321	49927130	+	0	NA	intron (NM_001135101, intron 10 of 10)	MLT1B|LTR|ERVL-MaLR	7591	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
179911	chr5	689471	690530	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	3352	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
188263	chr5	151085101	151086110	+	0	NA	intron (NM_001252390, intron 1 of 17)	intron (NM_001252390, intron 1 of 17)	1561	NM_001252391	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
227070	chr9	84315251	84315550	+	0	NA	intron (NM_001199633, intron 1 of 17)	intron (NM_001199633, intron 1 of 17)	25358	NR_037638	64078		NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
51853	chr12	53471921	53472430	+	0	NA	intron (NM_031989, intron 14 of 14)	intron (NM_031989, intron 14 of 14)	7707	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
153782	chr22	29585721	29585980	+	0	NA	Intergenic	AluY|SINE|Alu	-4737	NM_003634	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
235180	chrX	41277321	41277580	+	0	NA	TTS (NR_135616)	TTS (NR_135616)	1711	NR_135616	105373185		NR_135616	ENSG00000223714	LINC02601	-	long intergenic non-protein coding RNA 2601	ncRNA
34683	chr10	133370671	133371180	+	0	NA	TTS (NR_037509)	TTS (NR_037509)	738	NR_037509	100500911		NR_037509	ENSG00000265395	MIR3944	-	microRNA 3944	ncRNA
36055	chr11	2945451	2946400	+	0	NA	intron (NM_001369382, intron 15 of 15).2	intron (NM_001369382, intron 15 of 15).2	-16505	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
124124	chr19	55670251	55670800	+	0	NA	intron (NM_007279, intron 11 of 11)	intron (NM_007279, intron 11 of 11)	-4670	NM_001321263	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
53305	chr12	64549521	64549880	+	0	NA	Intergenic	Intergenic	-60795	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
79572	chr16	992001	992400	+	0	NA	Intergenic	Intergenic	10430	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
41815	chr11	67021501	67022280	+	0	NA	promoter-TSS (NM_001177880)	promoter-TSS (NM_001177880)	-903	NM_001177880	91683		NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
16113	chr1	153638521	153639180	+	0	NA	intron (NM_001244664, intron 3 of 3)	intron (NM_001244664, intron 3 of 3)	-4489	NM_001024210	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
13977	chr1	120557351	120557800	+	0	NA	intron (NR_144516, intron 8 of 43)	intron (NR_144516, intron 8 of 43)	-1110	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
5474	chr1	25657171	25657530	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	-38805	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
20602	chr1	198790071	198790430	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	68732	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
140265	chr2	232309941	232311030	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-68266	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
137396	chr2	196233321	196234130	+	0	NA	intron (NM_001348768, intron 21 of 28)	intron (NM_001348768, intron 21 of 28)	-26299	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
233820	chrX	1477771	1478930	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-24588	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
181962	chr5	55094471	55094630	+	0	NA	Intergenic	L2|LINE|L2	-8096	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
116807	chr19	18537401	18537700	+	0	NA	intron (NM_012181, intron 6 of 8)	intron (NM_012181, intron 6 of 8)	6023	NM_012181	23770		NM_012181	ENSG00000105701	FKBP8	FKBP38|FKBPr38	FKBP prolyl isomerase 8	protein-coding
1971	chr1	6594471	6595150	+	0	NA	intron (NM_001324309, intron 3 of 3)	AluJr|SINE|Alu	8059	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
87904	chr16	78897171	78897330	+	0	NA	intron (NM_016373, intron 8 of 8)	AluSz|SINE|Alu	703487	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
12823	chr1	110004751	110004850	+	0	NA	intron (NM_001242675, intron 1 of 16)	intron (NM_001242675, intron 1 of 16)	852	NM_001242675	10768		NM_006621	ENSG00000168710	AHCYL1	DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA	adenosylhomocysteinase like 1	protein-coding
12992	chr1	110962051	110962350	+	0	NA	intron (NM_018372, intron 1 of 3)	intron (NM_018372, intron 1 of 3)	1722	NM_018372	55791		NM_018372	ENSG00000121931	LRIF1	C1orf103|FSHD3|HBiX1|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
177821	chr4	123607151	123607450	+	0	NA	Intergenic	Intergenic	-42691	NR_027105	285419		NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
129828	chr2	72422871	72423030	+	0	NA	intron (NR_135773, intron 18 of 21)	LTR12C|LTR|ERV1	-275088	NM_019885	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
191145	chr6	4210621	4210900	+	0	NA	Intergenic	Intergenic	-20731	NR_125874	102724096		NR_125874		LOC102724096	-	uncharacterized LOC102724096	ncRNA
59485	chr13	26476351	26476650	+	0	NA	Intergenic	Intergenic	-81183	NM_006646	10810		NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	WASP family member 3	protein-coding
160847	chr3	33092301	33092500	+	0	NA	3' UTR (NM_001039770, exon 2 of 2)	3' UTR (NM_001039770, exon 2 of 2)	4432	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
162529	chr3	48606651	48607180	+	0	NA	intron (NM_003365, intron 2 of 12)	AluSc|SINE|Alu	-1765	NR_132776	106635528		NR_132776		SNORA94	-	small nucleolar RNA, H/ACA box 94	snoRNA
93928	chr17	21299121	21299380	+	0	NA	intron (NM_145109, intron 3 of 11)	intron (NM_145109, intron 3 of 11)	11214	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
123291	chr19	53552271	53552630	+	0	NA	intron (NM_001317113, intron 2 of 4)	AluJo|SINE|Alu	-2049	NM_001253801	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
195967	chr6	41956121	41956380	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSg|SINE|Alu	-14402	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
164349	chr3	58032071	58032900	+	0	NA	intron (NM_001164319, intron 1 of 44)	intron (NM_001164319, intron 1 of 44)	24063	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
136085	chr2	173356501	173356700	+	0	NA	intron (NM_031942, intron 1 of 9)	AluJb|SINE|Alu	1728	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
28615	chr10	58270721	58271080	+	0	NA	intron (NM_018464, intron 1 of 2)	AluJr|SINE|Alu	1738	NM_018464	55847		NM_018464	ENSG00000122873	CISD1	C10orf70|MDS029|ZCD1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding
197174	chr6	62213751	62213850	+	0	NA	intron (NR_146870, intron 1 of 15)	AluY|SINE|Alu	72425	NM_152688	202559		NM_152688	ENSG00000112232	KHDRBS2	KHDRBS2-OT|KHDRBS2-OT1|SLM-1|SLM1	KH RNA binding domain containing, signal transduction associated 2	protein-coding
145238	chr20	38929401	38929600	+	0	NA	intron (NM_030919, intron 1 of 3)	intron (NM_030919, intron 1 of 3)	3083	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
52564	chr12	56156571	56156730	+	0	NA	intron (NM_001199629, intron 5 of 7)	FLAM_C|SINE|Alu	-1709	NM_021019	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
109265	chr19	535071	535230	+	0	NA	intron (NM_004359, intron 1 of 4)	intron (NM_004359, intron 1 of 4)	3390	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
174747	chr4	46839021	46839480	+	0	NA	intron (NM_130902, intron 2 of 2)	intron (NM_130902, intron 2 of 2)	69995	NM_130902	170712		NM_130902	ENSG00000170516	COX7B2	-	cytochrome c oxidase subunit 7B2	protein-coding
205716	chr7	23467321	23467800	+	0	NA	intron (NM_006547, intron 2 of 14)	intron (NM_006547, intron 2 of 14)	2931	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
90606	chr17	1629901	1630950	+	0	NA	Intergenic	Intergenic	-1591	NM_152346	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
156672	chr22	41652521	41653030	+	0	NA	intron (NM_001288976, intron 8 of 12)	AluSx4|SINE|Alu	31480	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
28774	chr10	62050001	62050300	+	0	NA	intron (NM_001244638, intron 1 of 6)	intron (NM_001244638, intron 1 of 6)	793	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
88292	chr16	84062671	84063080	+	0	NA	intron (NM_003791, intron 19 of 22)	intron (NM_003791, intron 19 of 22)	-20080	NM_001080442	146167		NM_001080442	ENSG00000166558	SLC38A8	FHASD|FVH2|SNAT8	solute carrier family 38 member 8	protein-coding
49831	chr12	32272621	32273300	+	0	NA	intron (NR_148725, intron 2 of 9)	intron (NR_148725, intron 2 of 9)	-126598	NM_001384126	121512		NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
172770	chr4	2926101	2926930	+	0	NA	intron (NM_001354755, intron 14 of 14)	CpG	7722	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
94481	chr17	29276101	29276730	+	0	NA	intron (NM_020772, intron 2 of 3)	AluSz|SINE|Alu	17733	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
3460	chr1	15944451	15944750	+	0	NA	exon (NM_001324137, exon 8 of 15)	exon (NM_001324137, exon 8 of 15)	31501	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
80940	chr16	3826021	3826280	+	0	NA	intron (NM_004380, intron 2 of 30)	AluJb|SINE|Alu	53970	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
197402	chr6	73511301	73512160	+	0	NA	Intergenic	AluSz|SINE|Alu	6708	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
25754	chr10	9342971	9343130	+	0	NA	Intergenic	Intergenic	-47457	NR_120635	101928272		NR_120635		LOC101928272	-	uncharacterized LOC101928272	ncRNA
37796	chr11	32584501	32585950	+	0	NA	intron (NM_001307929, intron 1 of 7)	intron (NM_001307929, intron 1 of 7)	1394	NM_006360	10480		NM_006360	ENSG00000149100	EIF3M	B5|GA17|PCID1|TANGO7|hfl-B5	eukaryotic translation initiation factor 3 subunit M	protein-coding
206206	chr7	28296971	28297200	+	0	NA	Intergenic	L2c|LINE|L2	-2236	NM_182899	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
33594	chr10	119517601	119519100	+	0	NA	intron (NM_002925, intron 3 of 4)	intron (NM_002925, intron 3 of 4)	18183	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
224092	chr9	4422251	4422800	+	0	NA	Intergenic	Intergenic	-67943	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
160525	chr3	30651071	30651430	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	44649	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
238487	chrX	153495021	153495350	+	0	NA	intron (NM_001711, intron 1 of 7)	intron (NM_001711, intron 1 of 7)	205	NM_001711	633		NM_001711	ENSG00000182492	BGN	DSPG1|MRLS|PG-S1|PGI|SEMDX|SLRR1A	biglycan	protein-coding
60167	chr13	40172121	40172380	+	0	NA	Intergenic	CpG	-9559	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
108489	chr18	72086551	72086650	+	0	NA	Intergenic	L2c|LINE|L2	-304374	NR_126324	102724913		NR_126324	ENSG00000265352	LINC01899	-	long intergenic non-protein coding RNA 1899	ncRNA
219184	chr8	66582271	66582630	+	0	NA	intron (NM_001144755, intron 8 of 14)	AluJb|SINE|Alu	30768	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
55140	chr12	98610051	98610600	+	0	NA	Intergenic	AluSq2|SINE|Alu	10690	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
199254	chr6	111844771	111845630	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	27871	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
35913	chr11	2422271	2423180	+	0	NA	intron (NM_014555, intron 1 of 23)	intron (NM_014555, intron 1 of 23)	320	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
74528	chr15	60481671	60482230	+	0	NA	intron (NR_120341, intron 1 of 4)	MIR3|SINE|MIR	2772	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
92505	chr17	8887401	8887800	+	0	NA	exon (NM_014308, exon 11 of 19)	exon (NM_014308, exon 11 of 19)	-19923	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
48264	chr12	8642401	8642600	+	0	NA	Intergenic	AluJr4|SINE|Alu	20326	NM_003480	8076		NM_003480	ENSG00000197614	MFAP5	AAT9|MAGP-2|MAGP2|MFAP-5|MP25	microfibril associated protein 5	protein-coding
49138	chr12	14937451	14938350	+	0	NA	intron (NM_152321, intron 2 of 6)	intron (NM_152321, intron 2 of 6)	637	NM_152321	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
231417	chr9	131124821	131126430	+	0	NA	promoter-TSS (NM_005085)	promoter-TSS (NM_005085)	39	NM_001318324	8021		NM_005085	ENSG00000126883	NUP214	CAIN|CAN|IIAE9	nucleoporin 214	protein-coding
224149	chr9	4850601	4851000	+	0	NA	TTS (NR_029836)	TTS (NR_029836)	503	NR_029836	406894		NR_029836	ENSG00000199065	MIR101-2	MIRN101-2|mir-101-2	microRNA 101-2	ncRNA
165445	chr3	98555451	98556800	+	0	NA	Intergenic	Intergenic	24147	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
91533	chr17	4989751	4990250	+	0	NA	intron (NM_001167985, intron 4 of 7)	intron (NM_001167985, intron 4 of 7)	-2325	NM_001171166	23125		NM_015099	ENSG00000108509	CAMTA2	-	calmodulin binding transcription activator 2	protein-coding
101419	chr17	67395151	67395600	+	0	NA	intron (NM_181671, intron 1 of 9)	AluJr4|SINE|Alu	18094	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
164043	chr3	53347001	53348800	+	0	NA	promoter-TSS (NM_018403)	promoter-TSS (NM_018403)	-357	NM_001290204	55802		NM_018403	ENSG00000272886	DCP1A	HSA275986|Nbla00360|SMAD4IP1|SMIF	decapping mRNA 1A	protein-coding
54513	chr12	92106671	92107300	+	0	NA	intron (NR_132341, intron 1 of 4)	MER58B|DNA|hAT-Charlie	34728	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
21498	chr1	205739171	205739330	+	0	NA	intron (NM_022731, intron 1 of 6)	intron (NM_022731, intron 1 of 6)	10932	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
40247	chr11	63652501	63652900	+	0	NA	intron (NM_015459, intron 3 of 12)	intron (NM_015459, intron 3 of 12)	18676	NM_015459	25923		NM_015459	ENSG00000184743	ATL3	HSN1F	atlastin GTPase 3	protein-coding
214888	chr7	151412421	151412680	+	0	NA	intron (NR_109857, intron 4 of 5)	intron (NR_109857, intron 4 of 5)	-1838	NM_001284261	349136		NM_198285	ENSG00000187260	WDR86	-	WD repeat domain 86	protein-coding
124999	chr2	9476401	9476600	+	0	NA	intron (NM_001320863, intron 2 of 5)	LTR7C|LTR|ERV1	1445	NM_001320858	285148		NM_001039613	ENSG00000134330	IAH1	-	isoamyl acetate hydrolyzing esterase 1 (putative)	protein-coding
84040	chr16	29570501	29570700	+	0	NA	intron (NR_135305, intron 1 of 13)	AluJo|SINE|Alu	24492	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
93364	chr17	18238751	18239050	+	0	NA	intron (NM_004140, intron 16 of 22)	AluSx1|SINE|Alu	13265	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
116586	chr19	18253571	18254180	+	0	NA	intron (NR_036575, intron 1 of 3)	intron (NR_036575, intron 1 of 3)	1544	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
75500	chr15	66392951	66393250	+	0	NA	intron (NM_002755, intron 1 of 10)	L1ME3Cz|LINE|L1	6188	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
32300	chr10	102144301	102144500	+	0	NA	intron (NM_001288727, intron 7 of 11)	intron (NM_001288727, intron 7 of 11)	-7776	NM_001284388	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
231591	chr9	131540501	131540950	+	0	NA	Intergenic	L1MEd|LINE|L1	-4798	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
19543	chr1	178768401	178768750	+	0	NA	intron (NM_001286247, intron 1 of 18)	L1PA15-16|LINE|L1	43331	NM_152663	55103		NM_018037	ENSG00000116191	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
88561	chr16	85548321	85548580	+	0	NA	Intergenic	L1MA4|LINE|L1	-62959	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
158339	chr22	50451751	50452150	+	0	NA	intron (NM_002972, intron 36 of 40)	AluSx1|SINE|Alu	23085	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
190451	chr5	179908851	179908950	+	0	NA	Intergenic	Intergenic	-1003	NM_015043	23061		NM_015043	ENSG00000197226	TBC1D9B	GRAMD9B	TBC1 domain family member 9B	protein-coding
216169	chr8	11762371	11762530	+	0	NA	3' UTR (NM_001031839, exon 1 of 1)	3' UTR (NM_001031839, exon 1 of 1)	1194	NM_001031839	606553		NM_001031839		LINC02905	C8orf49|G4DM	long intergenic non-protein coding RNA 2905	ncRNA
183582	chr5	80177951	80178330	+	0	NA	intron (NM_001174072, intron 2 of 11)	intron (NM_001174072, intron 2 of 11)	77908	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
375	chr1	1035621	1036250	+	0	NA	intron (NM_198576, intron 3 of 35)	intron (NM_198576, intron 3 of 35)	1942	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
53456	chr12	65740671	65740830	+	0	NA	Intergenic	Intergenic	-83710	NM_001300918	8091		NM_003483	ENSG00000149948	HMGA2	BABL|HMGI-C|HMGIC|LIPO|SRS5|STQTL9	high mobility group AT-hook 2	protein-coding
56798	chr12	120206121	120206730	+	0	NA	intron (NR_038924, intron 1 of 3)	MER1B|DNA|hAT-Charlie	5134	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
21105	chr1	203504601	203505180	+	0	NA	intron (NM_014359, intron 7 of 7)	intron (NM_014359, intron 7 of 7)	10737	NM_014359	26254		NM_014359	ENSG00000188770	OPTC	OPT	opticin	protein-coding
44555	chr11	108196821	108197180	+	0	NA	intron (NM_001321307, intron 2 of 17)	MamRTE1|LINE|RTE-BovB	25638	NM_001321307	4863		NM_002519	ENSG00000149308	NPAT	E14|E14/NPAT|p220	nuclear protein, coactivator of histone transcription	protein-coding
205133	chr7	7105171	7105530	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-8564	NR_034022	100131257		NR_034022		LOC100131257	-	zinc finger protein 655 pseudogene	pseudo
228877	chr9	112486001	112488180	+	0	NA	5' UTR (NM_001350649, exon 1 of 5)	5' UTR (NM_001350649, exon 1 of 5)	122	NM_001287036	158405		NM_133465	ENSG00000165185	KIAA1958	-	KIAA1958	protein-coding
83679	chr16	28396571	28396930	+	0	NA	intron (NM_001286478, intron 8 of 21)	intron (NM_001286478, intron 8 of 21)	-5699	NR_107058	102465907		NR_107058	ENSG00000278340	MIR6862-2	hsa-mir-6862-2	microRNA 6862-2	ncRNA
22133	chr1	211890701	211890930	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	59854	NR_135820	102723727		NR_135818	ENSG00000229258	LPGAT1-AS1	-	LPGAT1 antisense RNA 1	ncRNA
13624	chr1	116409001	116409400	+	0	NA	intron (NR_024125, intron 1 of 2)	intron (NR_024125, intron 1 of 2)	9359	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
142269	chr20	3176151	3176450	+	0	NA	Intergenic	AluSz|SINE|Alu	-2751	NM_001367609	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
68144	chr14	75541651	75542190	+	0	NA	intron (NM_006399, intron 2 of 2)	AluSz|SINE|Alu	19451	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
143357	chr20	25983051	25983950	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-26299	NR_004846	100134868		NR_004846		LOC100134868	-	uncharacterized LOC100134868	ncRNA
175348	chr4	68901221	68901300	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	50544	NM_024743	79799		NM_024743	ENSG00000135220	UGT2A3	-	UDP glucuronosyltransferase family 2 member A3	protein-coding
137368	chr2	196170001	196172280	+	0	NA	intron (NM_004226, intron 1 of 7)	CpG	438	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
239135	chrY	11314771	11315400	+	0	NA	Intergenic	CpG	1106505	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
110694	chr19	2286821	2286950	+	0	NA	Intergenic	Intergenic	-4710	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
150614	chr21	43374071	43374580	+	0	NA	Intergenic	Intergenic	-11976	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
172123	chr4	1175101	1175730	+	0	NA	intron (NM_001199021, intron 2 of 7)	intron (NM_001199021, intron 2 of 7)	-2204	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
62980	chr13	112298121	112298730	+	0	NA	Intergenic	Intergenic	-15042	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
147333	chr20	58196371	58196850	+	0	NA	Intergenic	Intergenic	32043	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
164376	chr3	58218121	58218380	+	0	NA	Intergenic	AluSx|SINE|Alu	-7247	NM_001256560	1776		NM_004944	ENSG00000163687	DNASE1L3	D3|DHP2|DNAS1L3|LSD|SLEB16	deoxyribonuclease 1L3	protein-coding
67976	chr14	74904021	74904280	+	0	NA	TTS (NR_045209)	TTS (NR_045209)	18292	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
153850	chr22	30184901	30185300	+	0	NA	Intergenic	Intergenic	-54094	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
226702	chr9	75111851	75111950	+	0	NA	intron (NM_012383, intron 1 of 9)	AluSx3|SINE|Alu	23386	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
38894	chr11	47401571	47401730	+	0	NA	TTS (NR_039707)	TTS (NR_039707)	680	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
233571	chrX	296001	296330	+	0	NA	intron (NR_163416, intron 6 of 7)	AluSx3|SINE|Alu	12687	NM_001370373	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
116978	chr19	18876871	18877030	+	0	NA	TTS (NM_001290265)	TTS (NM_001290265)	19208	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
228371	chr9	99104121	99106000	+	0	NA	promoter-TSS (NM_001306210)	promoter-TSS (NM_001306210)	-53	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
202372	chr6	157814571	157815530	+	0	NA	Intergenic	Intergenic	-8196	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
11687	chr1	91843721	91843980	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	42301	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
216010	chr8	9001401	9001830	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1282	NM_153332	90459		NM_153332	ENSG00000104626	ERI1	3'HEXO|HEXO|HXAL|SEMDGC|SEMDGS|THEX1	exoribonuclease 1	protein-coding
143851	chr20	32530471	32530630	+	0	NA	intron (NM_001256798, intron 1 of 10)	AluY|SINE|Alu	20591	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
120991	chr19	45763721	45764730	+	0	NA	TTS (NM_175875)	TTS (NM_175875)	-3571	NR_147193	109729182		NR_147193	ENSG00000267395	DM1-AS	-	DM1 locus antisense RNA	ncRNA
106511	chr18	21052951	21053400	+	0	NA	intron (NM_005406, intron 2 of 32)	Cheshire|DNA|hAT-Charlie	58638	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
59296	chr13	24263271	24263900	+	0	NA	intron (NM_153023, intron 3 of 11)	MER2|DNA|TcMar-Tigger	-7102	NM_001286794	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
209709	chr7	86340571	86340750	+	0	NA	Intergenic	L1PA2|LINE|L1	-303249	NM_001363522	2913		NM_000840	ENSG00000198822	GRM3	GLUR3|GPRC1C|MGLUR3|mGlu3	glutamate metabotropic receptor 3	protein-coding
139707	chr2	227507951	227508450	+	0	NA	intron (NM_001135189, intron 2 of 11)	MamSINE1|SINE|tRNA-RTE	36044	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
122647	chr19	49850051	49852600	+	0	NA	5' UTR (NM_001305105, exon 1 of 13)	5' UTR (NM_001305105, exon 1 of 13)	166	NM_017432	53635		NM_017432	ENSG00000104960	PTOV1	ACID2|PTOV-1	PTOV1 extended AT-hook containing adaptor protein	protein-coding
204538	chr7	4883001	4884200	+	0	NA	5' UTR (NM_018059, exon 1 of 15)	5' UTR (NM_018059, exon 1 of 15)	116	NM_018059	55698		NM_018059	ENSG00000157927	RADIL	RASIP2	Rap associating with DIL domain	protein-coding
194459	chr6	33179521	33179980	+	0	NA	exon (NM_080679, exon 10 of 63).6	exon (NM_080679, exon 10 of 63).6	12717	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
173414	chr4	8160371	8160850	+	0	NA	Intergenic	MIR3|SINE|MIR	-1797	NM_001130084	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
89380	chr16	88798771	88798930	+	0	NA	Intergenic	L3|LINE|CR1	-4939	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
213523	chr7	139079801	139080380	+	0	NA	exon (NM_024625, exon 4 of 9)	exon (NM_024625, exon 4 of 9)	29630	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
106836	chr18	24021071	24021500	+	0	NA	TTS (NM_001243425)	TTS (NM_001243425)	-5825	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
105364	chr17	82647631	82649900	+	0	NA	promoter-TSS (NM_019613)	promoter-TSS (NM_019613)	-321	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
77987	chr15	89419251	89419650	+	0	NA	intron (NR_160724, intron 2 of 2)	intron (NR_160724, intron 2 of 2)	19279	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
25274	chr10	6139051	6139350	+	0	NA	Intergenic	L1MC4|LINE|L1	-5721	NR_136554	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
115115	chr19	14353101	14353750	+	0	NA	intron (NR_134908, intron 1 of 3)	AluSx1|SINE|Alu	10565	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
3315	chr1	15407401	15408180	+	0	NA	Intergenic	Intergenic	-2098	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
155195	chr22	37817371	37818050	+	0	NA	TTS (NM_014291)	TTS (NM_014291)	-5672	NM_003614	8484		NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
58663	chr12	132529671	132529850	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	24354	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
7176	chr1	32260201	32260930	+	0	NA	intron (NM_005356, intron 1 of 12)	U3|snRNA|snRNA	9300	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
236499	chrX	71766671	71767250	+	0	NA	intron (NR_165034, intron 4 of 4).2	intron (NR_165034, intron 4 of 4).2	1743	NR_165034	100132994		NM_001145139	ENSG00000215113	CXorf49B	CXorf49	chromosome X open reading frame 49B	protein-coding
106497	chr18	14870921	14871180	+	0	NA	Intergenic	Intergenic	40884	NR_036153	100422907		NR_036153	ENSG00000265499	MIR3156-2	mir-3156-2	microRNA 3156-2	ncRNA
150713	chr21	43728321	43729450	+	0	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	9756	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
110793	chr19	2452401	2453630	+	0	NA	intron (NM_032737, intron 1 of 11)	intron (NM_032737, intron 1 of 11)	3944	NM_032737	84823		NM_032737	ENSG00000176619	LMNB2	EPM9|LAMB2|LMN2|MCPH27	lamin B2	protein-coding
127692	chr2	43210351	43211330	+	0	NA	Intergenic	Intergenic	15766	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
220141	chr8	94894321	94894700	+	0	NA	intron (NM_057749, intron 1 of 11)	intron (NM_057749, intron 1 of 11)	744	NM_057749	9134		NM_004702	ENSG00000175305	CCNE2	CYCE2	cyclin E2	protein-coding
177570	chr4	119374421	119374900	+	0	NA	Intergenic	Intergenic	36000	NR_037596	401149		NR_037596		LINC01061	KIKAT	long intergenic non-protein coding RNA 1061	ncRNA
84611	chr16	30692121	30692780	+	0	NA	Intergenic	Intergenic	6021	NM_001256932	730183		NM_001256932	ENSG00000261840	LOC730183	-	uncharacterized LOC730183	ncRNA
83861	chr16	28904101	28904300	+	0	NA	TTS (NM_024816)	TTS (NM_024816)	21038	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
171158	chr3	195624621	195625600	+	0	NA	Intergenic	Intergenic	27049	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
169556	chr3	170221001	170221200	+	0	NA	Intergenic	Intergenic	-1324	NM_002740	5584		NM_002740	ENSG00000163558	PRKCI	DXS1179E|PKCI|nPKC-iota	protein kinase C iota	protein-coding
39532	chr11	61099721	61099980	+	0	NA	intron (NM_001346456, intron 1 of 10)	intron (NM_001346456, intron 1 of 10)	-2639	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
60369	chr13	40928021	40928480	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6476	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
125382	chr2	11330521	11331000	+	0	NA	intron (NM_001321643, intron 1 of 32)	GA-rich|Low_complexity|Low_complexity	13876	NM_004850	9475		NM_004850	ENSG00000134318	ROCK2	ROCK-II	Rho associated coiled-coil containing protein kinase 2	protein-coding
83168	chr16	23468071	23468230	+	0	NA	intron (NM_015044, intron 16 of 16)	(CTTT)n|Simple_repeat|Simple_repeat	-14961	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
181134	chr5	38174951	38175050	+	0	NA	intron (NR_147009, intron 2 of 2)	L1PA3|LINE|L1	26520	NR_134272	101929745		NR_134272	ENSG00000248461	LINC02119	-	long intergenic non-protein coding RNA 2119	ncRNA
143965	chr20	32837001	32837400	+	0	NA	intron (NM_012325, intron 4 of 6)	intron (NM_012325, intron 4 of 6)	17246	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
83400	chr16	27175221	27175550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-28141	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
177243	chr4	108627101	108627300	+	0	NA	intron (NM_033625, intron 5 of 5)	AluSc8|SINE|Alu	6571	NM_001319234	6164		NM_000995	ENSG00000109475	RPL34	L34|eL34	ribosomal protein L34	protein-coding
135263	chr2	159740971	159741330	+	0	NA	intron (NM_001282807, intron 1 of 8)	AluJr|SINE|Alu	7186	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
148515	chr20	64089651	64089750	+	0	NA	intron (NM_001200019, intron 2 of 5)	intron (NM_001200019, intron 2 of 5)	-2988	NM_001318855	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
167729	chr3	131033421	131033730	+	0	NA	intron (NM_001353039, intron 3 of 16)	intron (NM_001353039, intron 3 of 16)	5847	NM_001321223	79858		NM_024800	ENSG00000114670	NEK11	-	NIMA related kinase 11	protein-coding
160341	chr3	27717751	27718050	+	0	NA	intron (NM_001278182, intron 5 of 5)	intron (NM_001278182, intron 5 of 5)	4423	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
142137	chr20	2746021	2746280	+	0	NA	intron (NR_138537, intron 7 of 17)	intron (NR_138537, intron 7 of 17)	53272	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
188686	chr5	157279771	157280130	+	0	NA	intron (NM_014376, intron 1 of 30)	intron (NM_014376, intron 1 of 30)	10626	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
66601	chr14	63633771	63633930	+	0	NA	intron (NM_001382425, intron 1 of 3)	intron (NM_001382425, intron 1 of 3)	8021	NM_001382427	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
121271	chr19	46706051	46706150	+	0	NA	intron (NM_001079881, intron 4 of 18)	AluJo|SINE|Alu	3254	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
28432	chr10	48330401	48330800	+	0	NA	intron (NM_001323302, intron 3 of 13)	LTR71A|LTR|ERV1	23923	NM_001323320	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
216237	chr8	12196071	12196400	+	0	NA	non-coding (NR_146925, exon 2 of 4)	non-coding (NR_146925, exon 2 of 4)	-2102	NR_148876	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
137431	chr2	196750751	196751360	+	0	NA	Intergenic	Intergenic	37517	NM_001353340	284992		NM_173466	ENSG00000144395	CCDC150	-	coiled-coil domain containing 150	protein-coding
45764	chr11	119248771	119249230	+	0	NA	intron (NM_005188, intron 2 of 15)	L1MB5|LINE|L1	42661	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
177327	chr4	109752401	109752700	+	0	NA	intron (NM_001375280, intron 6 of 12)	intron (NM_001375280, intron 6 of 12)	-22480	NM_030821	81579		NM_030821	ENSG00000123739	PLA2G12A	GXII|PLA2G12|ROSSY	phospholipase A2 group XIIA	protein-coding
215781	chr8	2143051	2143750	+	0	NA	intron (NM_003970, intron 35 of 36).2	intron (NM_003970, intron 35 of 36).2	66811	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
181616	chr5	44389651	44389750	+	0	NA	promoter-TSS (NM_004465)	promoter-TSS (NM_004465)	-280	NM_004465	2255		NM_004465	ENSG00000070193	FGF10	LADD3	fibroblast growth factor 10	protein-coding
28254	chr10	45600601	45601380	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6084	NM_145021	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
71420	chr14	105577451	105577750	+	0	NA	Intergenic	Intergenic	-43516	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
209631	chr7	77729521	77729780	+	0	NA	intron (NM_198467, intron 1 of 7)	intron (NM_198467, intron 1 of 7)	-32305	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
141585	chr2	241612401	241612930	+	0	NA	intron (NM_015963, intron 2 of 5)	L1MB7|LINE|L1	4836	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
102973	chr17	76718371	76718830	+	0	NA	3' UTR (NM_015167, exon 6 of 6)	3' UTR (NM_015167, exon 6 of 6)	-7441	NM_001378349	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
31210	chr10	91251421	91251690	+	0	NA	intron (NM_032373, intron 6 of 9)	intron (NM_032373, intron 6 of 9)	30892	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
58009	chr12	124379501	124379900	+	0	NA	intron (NM_001077261, intron 19 of 47)	MLT1C|LTR|ERVL-MaLR	-42458	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
85792	chr16	56951071	56951850	+	0	NA	Intergenic	Intergenic	-10490	NM_001286085	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
197620	chr6	83055351	83055700	+	0	NA	intron (NR_146809, intron 2 of 9)	intron (NR_146809, intron 2 of 9)	10316	NM_001350602	90025		NM_198920	ENSG00000118420	UBE3D	C6orf157|H10BH|UBE2CBP|YJR141W	ubiquitin protein ligase E3D	protein-coding
180513	chr5	14385051	14385350	+	0	NA	intron (NR_134469, intron 21 of 56)	L1ME4b|LINE|L1	-78783	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
97872	chr17	45048301	45048500	+	0	NA	intron (NM_001288654, intron 1 of 4)	AluSx4|SINE|Alu	3232	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
208095	chr7	56116051	56116630	+	0	NA	promoter-TSS (NM_001145712)	promoter-TSS (NM_001145712)	77	NM_001145712	389493		NM_001145712	ENSG00000185290	NUPR2	NUPR1L|P8	nuclear protein 2, transcriptional regulator	protein-coding
174592	chr4	40253021	40254080	+	0	NA	Intergenic	MIR|SINE|MIR	-53635	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
124670	chr2	3242171	3243100	+	0	NA	intron (NM_001330531, intron 3 of 7)	intron (NM_001330531, intron 3 of 7)	-116609	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
151809	chr22	18216121	18216630	+	0	NA	Intergenic	L1M3c|LINE|L1	-10466	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
24590	chr1	245888901	245889100	+	0	NA	intron (NM_001375962, intron 7 of 10)	intron (NM_001375962, intron 7 of 10)	99551	NM_001375965	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
221455	chr8	124425201	124425600	+	0	NA	Intergenic	Intergenic	-25420	NM_017956	55039		NM_017956	ENSG00000183665	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog	protein-coding
224176	chr9	5321171	5321750	+	0	NA	Intergenic	L2c|LINE|L2	-16744	NM_134441	6019		NM_005059	ENSG00000107014	RLN2	H2|H2-RLX|RLXH2|bA12D24.1.1|bA12D24.1.2	relaxin 2	protein-coding
228658	chr9	107280921	107281180	+	0	NA	Intergenic	L2a|LINE|L2	-2229	NM_002874	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
147039	chr20	53623201	53624400	+	0	NA	intron (NR_134576, intron 2 of 2)	intron (NR_134576, intron 2 of 2)	15446	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
70711	chr14	103331921	103332380	+	0	NA	TTS (NR_158216)	TTS (NR_158216)	-2087	NM_001969	1983		NM_001969	ENSG00000100664	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
81238	chr16	4599051	4599350	+	0	NA	intron (NM_001145011, intron 14 of 15)	intron (NM_001145011, intron 14 of 15)	15688	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
118772	chr19	38383671	38384630	+	0	NA	TTS (NM_152657)	TTS (NM_152657)	3884	NM_152657	199720		NM_152657	ENSG00000179168	GGN	-	gametogenetin	protein-coding
50181	chr12	45994821	45995130	+	0	NA	Intergenic	MLT2B2|LTR|ERVL	-4401	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
98436	chr17	46835771	46836300	+	0	NA	Intergenic	Intergenic	-15548	NM_001320458	7484		NM_003396	ENSG00000158955	WNT9B	WNT14B|WNT15	Wnt family member 9B	protein-coding
150136	chr21	37712271	37712430	+	0	NA	intron (NM_002240, intron 3 of 3)	intron (NM_002240, intron 3 of 3)	204107	NM_002240	3763		NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2	potassium inwardly rectifying channel subfamily J member 6	protein-coding
225983	chr9	41236351	41236680	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-2680	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
24565	chr1	244963221	244963480	+	0	NA	Intergenic	Intergenic	-6519	NM_032328	84288		NM_032328	ENSG00000203666	EFCAB2	CFAP200|DRC8	EF-hand calcium binding domain 2	protein-coding
228908	chr9	113060021	113060800	+	0	NA	Intergenic	CpG	-3686	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
116301	chr19	17776621	17777080	+	0	NA	intron (NR_169233, intron 18 of 26)	AluSx1|SINE|Alu	-18288	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
126354	chr2	27426651	27427180	+	0	NA	promoter-TSS (NM_001321357)	promoter-TSS (NM_001321357)	-875	NM_001321357	29959		NM_013392	ENSG00000115216	NRBP1	BCON3|MADM|MUDPNP|NRBP	nuclear receptor binding protein 1	protein-coding
22880	chr1	225784701	225785100	+	0	NA	intron (NM_003133, intron 2 of 2)	intron (NM_003133, intron 2 of 2)	7074	NM_003133	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
195355	chr6	36638371	36638730	+	0	NA	Intergenic	AluJb|SINE|Alu	-16038	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
225212	chr9	34139601	34139830	+	0	NA	Intergenic	AluJb|SINE|Alu	-13017	NM_015397	25853		NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
57125	chr12	121209601	121211630	+	0	NA	intron (NR_046373, intron 1 of 10)	AluJr|SINE|Alu	486	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
6531	chr1	28574501	28574700	+	0	NA	intron (NM_017846, intron 8 of 8)	AluJb|SINE|Alu	4222	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	small nucleolar RNA, C/D box 99	snoRNA
116034	chr19	17183801	17185430	+	0	NA	intron (NM_004145, intron 16 of 39)	intron (NM_004145, intron 16 of 39)	-30742	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
27876	chr10	41862771	41863430	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	504945	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
168171	chr3	139935351	139935450	+	0	NA	exon (NM_022131, exon 1 of 17)	exon (NM_022131, exon 1 of 17)	215	NM_022131	64084		NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
50888	chr12	49262371	49263200	+	0	NA	intron (NM_001303115, intron 3 of 5)	AluSx|SINE|Alu	-2297	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
85981	chr16	57415201	57415730	+	0	NA	intron (NM_002987, intron 3 of 3)	intron (NM_002987, intron 3 of 3)	10698	NM_002987	6361		NM_002987	ENSG00000102970	CCL17	A-152E5.3|ABCD-2|SCYA17|TARC	C-C motif chemokine ligand 17	protein-coding
81989	chr16	11899201	11899630	+	0	NA	intron (NM_001130007, intron 1 of 14)	intron (NM_001130007, intron 1 of 14)	16541	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
137347	chr2	196147251	196148080	+	0	NA	intron (NM_004226, intron 3 of 7)	intron (NM_004226, intron 3 of 7)	23913	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
236477	chrX	71619131	71620530	+	0	NA	Intergenic	L1ME3C|LINE|L1	-1319	NM_001504	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
117271	chr19	19463671	19464180	+	0	NA	intron (NM_001384522, intron 3 of 13)	intron (NM_001384522, intron 3 of 13)	28862	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
175367	chr4	70617401	70618350	+	0	NA	Intergenic	Intergenic	-10869	NM_031889	10117		NM_031889	ENSG00000132464	ENAM	ADAI|AI1C|AIH2	enamelin	protein-coding
200721	chr6	137639071	137639480	+	0	NA	Intergenic	Intergenic	-26371	NR_125867	102723649		NR_125867	ENSG00000230533	LINC03004	-	long intergenic non-protein coding RNA 3004	ncRNA
207349	chr7	44075421	44075680	+	0	NA	intron (NM_001284330, intron 5 of 8)	intron (NM_001284330, intron 5 of 8)	-2117	NR_106897	102465504		NR_106897	ENSG00000283969	MIR6838	hsa-mir-6838	microRNA 6838	ncRNA
106479	chr18	14393401	14393600	+	0	NA	Intergenic	CpG	56077	NR_026756	284233		NR_026756	ENSG00000290462	CYP4F35P	-	cytochrome P450 family 4 subfamily F member 35, pseudogene	pseudo
195589	chr6	37538051	37538550	+	0	NA	Intergenic	Intergenic	17122	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
233419	chr9	137596871	137597580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6713	NM_138462	116225		NM_138462	ENSG00000165724	ZMYND19	MIZIP	zinc finger MYND-type containing 19	protein-coding
103417	chr17	78230521	78231080	+	0	NA	promoter-TSS (NM_001204211)	promoter-TSS (NM_001204211)	-493	NM_001204212	283999		NM_001145529	ENSG00000204278	TMEM235	ARGM1	transmembrane protein 235	protein-coding
160437	chr3	28335221	28335500	+	0	NA	intron (NM_022461, intron 5 of 7)	intron (NM_022461, intron 5 of 7)	-13361	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
47356	chr12	2052401	2053280	+	0	NA	promoter-TSS (NM_001129833)	promoter-TSS (NM_001129833)	-147	NM_001129840	775		NM_000719	ENSG00000151067	CACNA1C	CACH2|CACN2|CACNA1C-IT2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|NEDHLSS|TS|TS. LQT8	calcium voltage-gated channel subunit alpha1 C	protein-coding
94790	chr17	31068371	31068600	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-9376	NR_146737	646030		NR_146737		LOC646030	LRRC37	leucine rich repeat containing 37B pseudogene	pseudo
48497	chr12	9852401	9853000	+	0	NA	3' UTR (NM_005127, exon 5 of 5)	3' UTR (NM_005127, exon 5 of 5)	17159	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
84319	chr16	30130301	30131100	+	0	NA	Intergenic	AluJo|SINE|Alu	-7391	NM_001109891	5595		NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
32471	chr10	102654821	102655080	+	0	NA	intron (NR_144321, intron 2 of 5)	intron (NR_144321, intron 2 of 5)	10455	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
137223	chr2	191571121	191571530	+	0	NA	Intergenic	Intergenic	-106747	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
4891	chr1	23796651	23796750	+	0	NA	exon (NM_001008216, exon 9 of 12)	exon (NM_001008216, exon 9 of 12)	2847	NM_001127621	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
165769	chr3	105764551	105765730	+	0	NA	intron (NR_135806, intron 4 of 20)	Tigger1|DNA|TcMar-Tigger	102451	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
195660	chr6	37985351	37985700	+	0	NA	intron (NM_021943, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	165798	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
93874	chr17	21039521	21040480	+	0	NA	intron (NM_015276, intron 1 of 12)	AluJo|SINE|Alu	3011	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
63530	chr13	114351101	114351300	+	0	NA	Intergenic	L1MC|LINE|L1	-17252	NR_126391	104355150		NR_126391		LINC01054	-	long intergenic non-protein coding RNA 1054	ncRNA
129472	chr2	69582021	69582280	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	61588	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
17755	chr1	159014171	159014680	+	0	NA	intron (NM_001376587, intron 1 of 11)	intron (NM_001376587, intron 1 of 11)	4518	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
85596	chr16	53516221	53516550	+	0	NA	Intergenic	Intergenic	-13081	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
60661	chr13	42990401	42991080	+	0	NA	intron (NM_033255, intron 1 of 10)	intron (NM_033255, intron 1 of 10)	1501	NM_033255	94240		NM_033255	ENSG00000133106	EPSTI1	BRESI1	epithelial stromal interaction 1	protein-coding
44626	chr11	108887471	108887880	+	0	NA	intron (NM_004398, intron 16 of 17)	AluSx1|SINE|Alu	222606	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
94765	chr17	30822901	30823520	+	0	NA	intron (NM_015986, intron 1 of 7)	AluSg|SINE|Alu	1482	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
6810	chr1	30914471	30915030	+	0	NA	Intergenic	MIR3|SINE|MIR	-5992	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
141359	chr2	240626751	240627630	+	0	NA	intron (NM_005301, intron 1 of 1)	intron (NM_005301, intron 1 of 1)	1945	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
174796	chr4	48058571	48059130	+	0	NA	Intergenic	Intergenic	42078	NM_207330	152519		NM_207330	ENSG00000163293	NIPAL1	NIPA3|NPAL1|SLC57A3	NIPA like domain containing 1	protein-coding
139882	chr2	230666421	230666680	+	0	NA	Intergenic	Intergenic	33979	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
99159	chr17	49364801	49365130	+	0	NA	intron (NR_110883, intron 2 of 4)	intron (NR_110883, intron 2 of 4)	-2492	NM_014897	22834		NM_014897	ENSG00000198740	ZNF652	-	zinc finger protein 652	protein-coding
76278	chr15	74109071	74109500	+	0	NA	Intergenic	Intergenic	-9079	NR_160652	732265		NR_160652		COMMD4P2	-	COMM domain containing 4 pseudogene 2	pseudo
10853	chr1	77969751	77971250	+	0	NA	intron (NR_146539, intron 1 of 22)	MER33|DNA|hAT-Charlie	8572	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
34644	chr10	133322671	133323400	+	0	NA	Intergenic	AluJr|SINE|Alu	-10698	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
118576	chr19	36274471	36274630	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-28622	NM_001366188	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
116850	chr19	18603071	18604350	+	0	NA	intron (NM_004750, intron 1 of 8)	intron (NM_004750, intron 1 of 8)	3089	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
80442	chr16	2657701	2658980	+	0	NA	TTS (NR_040023)	TTS (NR_040023)	15099	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
857	chr1	1617921	1618830	+	0	NA	intron (NM_001170687, intron 2 of 19)	intron (NM_001170687, intron 2 of 19)	2520	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
217455	chr8	28699671	28700200	+	0	NA	non-coding (NR_126027, exon 2 of 3)	non-coding (NR_126027, exon 2 of 3)	1529	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
79256	chr16	428121	428380	+	0	NA	intron (NM_001370401, intron 1 of 14)	intron (NM_001370401, intron 1 of 14)	2601	NM_014700	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
15387	chr1	150165851	150166230	+	0	NA	intron (NR_135098, intron 2 of 3)	ERV3-16A3_I-int|LTR|ERVL	5312	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
160896	chr3	33800771	33801330	+	0	NA	intron (NM_001256192, intron 1 of 5)	intron (NM_001256192, intron 1 of 5)	2420	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
153978	chr22	30374951	30375050	+	0	NA	non-coding (NR_046312, exon 2 of 2)	non-coding (NR_046312, exon 2 of 2)	2905	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
186649	chr5	138567301	138567980	+	0	NA	intron (NM_004134, intron 6 of 16)	intron (NM_004134, intron 6 of 16)	-6530	NR_002913	26785		NR_002913	ENSG00000206989	SNORD63	RNU63|SNORD63A|U63	small nucleolar RNA, C/D box 63	snoRNA
43008	chr11	73979571	73980850	+	0	NA	intron (NM_001381947, intron 2 of 8)	intron (NM_001381947, intron 2 of 8)	2633	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
226887	chr9	78240471	78240830	+	0	NA	intron (NM_001349839, intron 3 of 16)	intron (NM_001349839, intron 3 of 16)	4575	NM_001330693	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
213090	chr7	131107801	131108400	+	0	NA	non-coding (NR_109851, exon 2 of 6)	non-coding (NR_109851, exon 2 of 6)	-1070	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
103591	chr17	78710521	78711200	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	6172	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
132392	chr2	105782901	105783600	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	38187	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
199311	chr6	112144321	112144630	+	0	NA	intron (NM_002290, intron 19 of 38)	intron (NM_002290, intron 19 of 38)	56884	NM_001033564	619208		NM_001033564	ENSG00000203778	FAM229B	C6orf225	family with sequence similarity 229 member B	protein-coding
176494	chr4	91978501	91978790	+	0	NA	Intergenic	L1HS|LINE|L1	298657	NR_125920	101929194		NR_125920		LNCPRESS2	-	lncRNA p53 regulated and ESC associated 2	ncRNA
129565	chr2	69916471	69916630	+	0	NA	intron (NM_001202514, intron 2 of 4)	intron (NM_001202514, intron 2 of 4)	1441	NM_001202513	4084		NM_002357	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
162738	chr3	49038271	49038630	+	0	NA	intron (NM_001320580, intron 7 of 10)	AluSg|SINE|Alu	-9052	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
174768	chr4	47564301	47564780	+	0	NA	intron (NM_020453, intron 15 of 22)	intron (NM_020453, intron 15 of 22)	79265	NM_020453	57205		NM_020453	ENSG00000145246	ATP10D	ATPVD	ATPase phospholipid transporting 10D (putative)	protein-coding
23011	chr1	226185271	226185650	+	0	NA	intron (NM_022735, intron 1 of 7)	intron (NM_022735, intron 1 of 7)	1281	NM_022735	64746		NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding
101820	chr17	73588501	73588700	+	0	NA	intron (NM_001144952, intron 1 of 44)	MER20|DNA|hAT-Charlie	55845	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
92673	chr17	12019151	12019450	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1577	NM_001281435	6416		NM_003010	ENSG00000065559	MAP2K4	JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1	mitogen-activated protein kinase kinase 4	protein-coding
19584	chr1	179296701	179297100	+	0	NA	intron (NR_045530, intron 1 of 13)	intron (NR_045530, intron 1 of 13)	3103	NM_003101	6646		NM_003101	ENSG00000057252	SOAT1	ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT	sterol O-acyltransferase 1	protein-coding
143300	chr20	25299801	25300750	+	0	NA	TTS (NM_001042472)	TTS (NM_001042472)	52190	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
124808	chr2	7539151	7539880	+	0	NA	Intergenic	L1PB1|LINE|L1	118254	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
12490	chr1	107951971	107952330	+	0	NA	intron (NM_006113, intron 1 of 26)	L1PA13|LINE|L1	-12293	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
195948	chr6	41932421	41932750	+	0	NA	exon (NM_004053, exon 7 of 7)	exon (NM_004053, exon 7 of 7)	9223	NM_001760	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
132143	chr2	101725551	101726050	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	27535	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
226506	chr9	71793921	71794180	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-25537	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
9519	chr1	51430701	51431230	+	0	NA	intron (NM_001981, intron 12 of 24)	intron (NM_001981, intron 12 of 24)	-8870	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
145176	chr20	38864721	38865730	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	59528	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
46652	chr11	128699571	128700480	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-4002	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
141053	chr2	238251121	238251380	+	0	NA	intron (NM_022817, intron 20 of 22)	intron (NM_022817, intron 20 of 22)	-11212	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
144212	chr20	34360471	34360630	+	0	NA	Intergenic	AluSx|SINE|Alu	-2723	NM_001257138	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
107324	chr18	45621001	45621380	+	0	NA	intron (NM_007163, intron 1 of 19)	intron (NM_007163, intron 1 of 19)	5714	NM_007163	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
160868	chr3	33433421	33434000	+	0	NA	intron (NM_014517, intron 1 of 15)	intron (NM_014517, intron 1 of 15)	6668	NM_001128160	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
153301	chr22	24181221	24181830	+	0	NA	promoter-TSS (NM_019601)	promoter-TSS (NM_019601)	38	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
16096	chr1	153568321	153569050	+	0	NA	Intergenic	Intergenic	-2841	NM_001366407	6273		NM_005978	ENSG00000196754	S100A2	CAN19|S100L	S100 calcium binding protein A2	protein-coding
68183	chr14	76151051	76152930	+	0	NA	promoter-TSS (NM_017926)	promoter-TSS (NM_017926)	68	NM_001322030	55668		NM_017926	ENSG00000089916	GPATCH2L	C14orf118	G-patch domain containing 2 like	protein-coding
153034	chr22	23250151	23250930	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-12227	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
144983	chr20	37343801	37344150	+	0	NA	promoter-TSS (NM_005417)	promoter-TSS (NM_005417)	-710	NM_005417	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
180132	chr5	1323171	1323330	+	0	NA	intron (NM_030782, intron 12 of 16)	intron (NM_030782, intron 12 of 16)	-13873	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
12465	chr1	107843821	107845130	+	0	NA	intron (NM_006113, intron 2 of 26)	L1PA7|LINE|L1	-52748	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
6161	chr1	27405871	27406230	+	0	NA	3' UTR (NM_001201404, exon 8 of 8)	3' UTR (NM_001201404, exon 8 of 8)	13428	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
183264	chr5	76435521	76435780	+	0	NA	intron (NM_006633, intron 1 of 35)	L1PB3|LINE|L1	32365	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
47198	chr12	815051	815150	+	0	NA	intron (NM_018979, intron 2 of 27)	MER1A|DNA|hAT-Charlie	62177	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
119151	chr19	39385951	39386430	+	0	NA	exon (NM_001256826, exon 13 of 13)	exon (NM_001256826, exon 13 of 13)	4916	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
66309	chr14	61408571	61408730	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	87207	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
129104	chr2	65126901	65127100	+	0	NA	intron (NM_004161, intron 1 of 5)	intron (NM_004161, intron 1 of 5)	3106	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
151612	chr22	12097901	12098170	+	0	NA	Intergenic	CpG	200629	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
111692	chr19	4273521	4273780	+	0	NA	Intergenic	Intergenic	-5419	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
142028	chr20	1666521	1667080	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-9021	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
192406	chr6	24843371	24843730	+	0	NA	exon (NM_001346032, exon 13 of 22)	exon (NM_001346032, exon 13 of 22)	33720	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
68728	chr14	90827001	90827330	+	0	NA	Intergenic	Intergenic	-10735	NM_001010854	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
7216	chr1	32308521	32309180	+	0	NA	intron (NM_004964, intron 2 of 13)	AluJb|SINE|Alu	16767	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
41540	chr11	66286471	66286630	+	0	NA	intron (NM_001300861, intron 4 of 6)	AluJb|SINE|Alu	2593	NM_001300861	10897		NM_020470	ENSG00000174851	YIF1A	54TM|FinGER7|YIF1|YIF1P	Yip1 interacting factor homolog A, membrane trafficking protein	protein-coding
207043	chr7	39566101	39567150	+	0	NA	intron (NM_001282446, intron 1 of 2)	CpG	221	NM_001282446	57002		NM_020192	ENSG00000241127	YAE1	C7orf36|CIAB2|GK003|YAE1D1	YAE1 maturation factor of ABCE1	protein-coding
178295	chr4	145125701	145126800	+	0	NA	intron (NM_002940, intron 17 of 17)	intron (NM_002940, intron 17 of 17)	-27709	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
232993	chr9	136993951	136994580	+	0	NA	TTS (NM_001329678)	TTS (NM_001329678)	1843	NM_001329678	286257		NM_183241	ENSG00000148362	PAXX	C9orf142|XLS	PAXX non-homologous end joining factor	protein-coding
73285	chr15	41862501	41863200	+	0	NA	exon (NM_016642, exon 42 of 68)	exon (NM_016642, exon 42 of 68)	3701	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
158682	chr3	5186911	5189980	+	0	NA	intron (NM_014674, intron 1 of 11)	CpG	738	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
59761	chr13	30120571	30120930	+	0	NA	Intergenic	L1M5|LINE|L1	-11875	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
169752	chr3	172530001	172530870	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-7005	NM_003810	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
47405	chr12	2879071	2879650	+	0	NA	intron (NR_027365, intron 1 of 1)	AluJb|SINE|Alu	2137	NM_001257098	83695		NM_001252499	ENSG00000171792	RHNO1	C12orf32|HKMT1188|RHINO	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding
47891	chr12	6735701	6735930	+	0	NA	Intergenic	L1MD2|LINE|L1	11528	NM_001164093	50813		NM_016319	ENSG00000111652	COPS7A	CSN7|CSN7A|SGN7a	COP9 signalosome subunit 7A	protein-coding
188328	chr5	151223701	151225200	+	0	NA	promoter-TSS (NM_015621)	promoter-TSS (NM_015621)	-358	NM_015621	26112		NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
54704	chr12	93435921	93437050	+	0	NA	intron (NM_003348, intron 1 of 3)	intron (NM_003348, intron 1 of 3)	5462	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
138075	chr2	201882301	201882700	+	0	NA	intron (NM_001261435, intron 12 of 13)	intron (NM_001261435, intron 12 of 13)	75921	NM_001261435	65061		NM_139158	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin dependent kinase 15	protein-coding
165835	chr3	105841671	105841830	+	0	NA	intron (NR_135807, intron 3 of 20)	AluY|SINE|Alu	25841	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
39736	chr11	61798921	61799180	+	0	NA	TTS (NM_013402)	TTS (NM_013402)	6139	NM_004111	2237		NM_004111	ENSG00000168496	FEN1	FEN-1|MF1|RAD2	flap structure-specific endonuclease 1	protein-coding
8794	chr1	42928551	42928650	+	0	NA	intron (NM_006516, intron 8 of 9)	intron (NM_006516, intron 8 of 9)	30268	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
81055	chr16	4321151	4321250	+	0	NA	intron (NM_032575, intron 1 of 6).2	intron (NM_032575, intron 1 of 6).2	5133	NM_032575	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
122696	chr19	49899151	49899530	+	0	NA	intron (NR_047577, intron 4 of 10)	intron (NR_047577, intron 4 of 10)	-2453	NM_152899	259307		NM_152899	ENSG00000104951	IL4I1	FIG1|LAAO|LAO|hIL4I1	interleukin 4 induced 1	protein-coding
37592	chr11	19557701	19558280	+	0	NA	intron (NM_001111018, intron 2 of 38)	intron (NM_001111018, intron 2 of 38)	-17320	NR_039706	100616118		NR_039706	ENSG00000265210	MIR4486	-	microRNA 4486	ncRNA
222190	chr8	133039901	133040130	+	0	NA	exon (NM_006748, exon 6 of 7)	exon (NM_006748, exon 6 of 7)	6566	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
186676	chr5	138651221	138652000	+	0	NA	Intergenic	Intergenic	-76209	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
43173	chr11	75384301	75384930	+	0	NA	Intergenic	Intergenic	-14876	NM_001260507	6188		NM_001005	ENSG00000149273	RPS3	S3|uS3	ribosomal protein S3	protein-coding
36989	chr11	11867971	11868130	+	0	NA	intron (NM_001372101, intron 1 of 26)	intron (NM_001372101, intron 1 of 26)	26078	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
46917	chr11	134248771	134249130	+	0	NA	exon (NM_014174, exon 6 of 7)	exon (NM_014174, exon 6 of 7)	4402	NM_014174	29087		NM_014174	ENSG00000151500	THYN1	HSPC144|MDS012|MY105|THY28|THY28KD	thymocyte nuclear protein 1	protein-coding
104643	chr17	81453721	81454630	+	0	NA	intron (NM_001377448, intron 14 of 27)	intron (NM_001377448, intron 14 of 27)	-2987	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
27366	chr10	30750801	30751250	+	0	NA	Intergenic	Intergenic	27806	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
23640	chr1	230641071	230641300	+	0	NA	Intergenic	Intergenic	-1296	NM_007357	22796		NM_007357	ENSG00000135775	COG2	CDG2Q|LDLC	component of oligomeric golgi complex 2	protein-coding
4649	chr1	22138371	22139250	+	0	NA	intron (NM_030761, intron 1 of 4)	intron (NM_030761, intron 1 of 4)	4287	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
126211	chr2	26838501	26838800	+	0	NA	Intergenic	Intergenic	-9482	NM_020134	56896		NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|CV2|RTSC4|Ulip6	dihydropyrimidinase like 5	protein-coding
25046	chr10	3770501	3771380	+	0	NA	Intergenic	Intergenic	14269	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
223758	chr8	144519451	144519930	+	0	NA	5' UTR (NM_001272036, exon 3 of 5)	5' UTR (NM_001272036, exon 3 of 5)	1698	NM_014665	9684		NM_014665	ENSG00000160959	LRRC14	LRRC14A	leucine rich repeat containing 14	protein-coding
24079	chr1	235322721	235323400	+	0	NA	intron (NM_016374, intron 2 of 23)	AluSz|SINE|Alu	-4156	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
118549	chr19	36126201	36126530	+	0	NA	TTS (NM_001300971)	TTS (NM_001300971)	10595	NM_001300971	1155		NM_001281	ENSG00000105254	TBCB	CG22|CKAP1|CKAPI	tubulin folding cofactor B	protein-coding
150278	chr21	41844401	41845380	+	0	NA	intron (NR_104258, intron 6 of 23)	intron (NR_104258, intron 6 of 23)	18412	NR_104260	63977		NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
113672	chr19	10392451	10392550	+	0	NA	intron (NM_007065, intron 7 of 7)	intron (NM_007065, intron 7 of 7)	11038	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
215302	chr7	157306251	157306950	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-30404	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
224238	chr9	5841351	5842380	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-8748	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
36238	chr11	3729401	3730000	+	0	NA	intron (NR_157590, intron 14 of 31)	AluJo|SINE|Alu	-58316	NM_001303034	57053		NM_020402	ENSG00000129749	CHRNA10	-	cholinergic receptor nicotinic alpha 10 subunit	protein-coding
66107	chr14	59919931	59920680	+	0	NA	intron (NR_075071, intron 1 of 32)	intron (NR_075071, intron 1 of 32)	592	NM_001355272	341883		NM_198499	ENSG00000131951	LRRC9	-	leucine rich repeat containing 9	protein-coding
95554	chr17	36727921	36728930	+	0	NA	Intergenic	Intergenic	126842	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
57236	chr12	121552571	121553400	+	0	NA	intron (NM_001005366, intron 4 of 22)	AluYh3|SINE|Alu	27261	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
14352	chr1	144008001	144008480	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-34721	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
104744	chr17	81675671	81676850	+	0	NA	Intergenic	LTR13|LTR|ERVK	7453	NM_001329609	339231		NM_001040025	ENSG00000214087	ARL16	-	ADP ribosylation factor like GTPase 16	protein-coding
56433	chr12	113363321	113363580	+	0	NA	intron (NM_173542, intron 1 of 11)	AluJr|SINE|Alu	4863	NM_173542	196463		NM_173542	ENSG00000151176	PLBD2	P76	phospholipase B domain containing 2	protein-coding
28930	chr10	63195021	63195280	+	0	NA	intron (NM_001322258, intron 12 of 24)	AluSz|SINE|Alu	61822	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
116782	chr19	18511321	18511980	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	10420	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
125639	chr2	19366351	19367400	+	0	NA	Intergenic	Intergenic	-8252	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
97362	chr17	43303701	43303900	+	0	NA	Intergenic	Intergenic	-3569	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
151966	chr22	19136671	19136830	+	0	NA	intron (NR_134304, intron 8 of 9)	intron (NR_134304, intron 8 of 9)	5442	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
139750	chr2	229909321	229909930	+	0	NA	intron (NM_001348325, intron 1 of 42)	AluJr|SINE|Alu	12054	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
86210	chr16	58024571	58025100	+	0	NA	promoter-TSS (NM_002428)	promoter-TSS (NM_002428)	-919	NM_002428	4324		NM_002428	ENSG00000102996	MMP15	MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15	protein-coding
167538	chr3	129314401	129315700	+	0	NA	3' UTR (NM_006026, exon 1 of 1)	3' UTR (NM_006026, exon 1 of 1)	-1221	NR_026991	339942		NM_001025468		H1-10-AS1	C3orf47|H1FX-AS1	H1-10 antisense RNA 1	ncRNA
136553	chr2	177398951	177399450	+	0	NA	intron (NM_003659, intron 1 of 19)	MIRc|SINE|MIR	6427	NM_003659	8540		NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3	alkylglycerone phosphate synthase	protein-coding
37261	chr11	14653721	14654180	+	0	NA	intron (NM_001363569, intron 1 of 15)	AluJb|SINE|Alu	10146	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
882	chr1	1644851	1645330	+	0	NA	intron (NM_033490, intron 5 of 18)	CpG	12310	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
20979	chr1	202625101	202626550	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	17628	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
21733	chr1	206797971	206798800	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-25891	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
72431	chr15	31486521	31487250	+	0	NA	intron (NM_130901, intron 13 of 13)	intron (NM_130901, intron 13 of 13)	160050	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
166181	chr3	111687921	111688250	+	0	NA	intron (NM_153268, intron 1 of 3)	MIR|SINE|MIR	-10652	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
135328	chr2	160369171	160369330	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	38632	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
183786	chr5	81975371	81975530	+	0	NA	intron (NM_031482, intron 1 of 7)	AluJb|SINE|Alu	3427	NM_031482	83734		NM_031482	ENSG00000152348	ATG10	APG10|APG10L|pp12616	autophagy related 10	protein-coding
50687	chr12	48863801	48864500	+	0	NA	intron (NM_014470, intron 2 of 4)	intron (NM_014470, intron 2 of 4)	1720	NM_014470	27289		NM_014470	ENSG00000172602	RND1	ARHS|RHO6|RHOS	Rho family GTPase 1	protein-coding
192094	chr6	16691101	16691980	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	68644	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
95042	chr17	32507421	32507880	+	0	NA	intron (NM_015194, intron 21 of 21)	MLT1A|LTR|ERVL-MaLR	20657	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
17622	chr1	156970071	156970330	+	0	NA	intron (NM_014784, intron 7 of 39)	intron (NM_014784, intron 7 of 39)	-33956	NR_030527	768220		NR_030527	ENSG00000211581	MIR765	MIRN765|hsa-mir-765|mir-765	microRNA 765	ncRNA
71922	chr15	22795521	22795980	+	0	NA	intron (NM_144599, intron 1 of 4)	intron (NM_144599, intron 1 of 4)	9106	NM_144599	123606		NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
185075	chr5	116574471	116574900	+	0	NA	5' UTR (NM_020796, exon 1 of 19)	5' UTR (NM_020796, exon 1 of 19)	138	NM_001300780	57556		NM_020681	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	semaphorin 6A	protein-coding
122940	chr19	50713591	50714300	+	0	NA	exon (NM_016148, exon 6 of 24)	exon (NM_016148, exon 6 of 24)	5857	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
207376	chr7	44113321	44113780	+	0	NA	intron (NM_001129, intron 20 of 20)	intron (NM_001129, intron 20 of 20)	2701	NR_039792	100616346		NR_039792	ENSG00000284412	MIR4649	mir-4649	microRNA 4649	ncRNA
106446	chr18	13673071	13673230	+	0	NA	intron (NM_001098801, intron 3 of 4)	intron (NM_001098801, intron 3 of 4)	31392	NM_001276251	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
153807	chr22	29712801	29713200	+	0	NA	Intergenic	MIR3|SINE|MIR	-7003	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
184473	chr5	100817171	100817530	+	0	NA	promoter-TSS (NR_031686)	promoter-TSS (NR_031686)	-785	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
22705	chr1	224050821	224051100	+	0	NA	Intergenic	Intergenic	58230	NR_136593	100287497		NR_136590		SEPTIN7P13	-	septin 7 pseudogene 13	pseudo
71893	chr15	22494371	22495530	+	0	NA	promoter-TSS (NM_004667)	promoter-TSS (NM_004667)	99	NM_004667	8924		NM_004667	ENSG00000128731	HERC2	D15F37S1|MRT38|SHEP1|jdf2|p528	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding
178413	chr4	147729071	147729680	+	0	NA	Intergenic	Intergenic	-2713	NM_024605	79658		NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
60879	chr13	46121921	46122380	+	0	NA	Intergenic	Intergenic	-17074	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
79776	chr16	1374101	1374530	+	0	NA	intron (NM_001372107, intron 10 of 14)	intron (NM_001372107, intron 10 of 14)	5337	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
55017	chr12	96376351	96376880	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	23824	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
175955	chr4	81040001	81040350	+	0	NA	intron (NM_001201, intron 1 of 2)	intron (NM_001201, intron 1 of 2)	9467	NM_001201	651		NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
153586	chr22	26711051	26711550	+	0	NA	intron (NR_110543, intron 1 of 5)	LTR16C|LTR|ERVL	38457	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
124977	chr2	8840771	8840930	+	0	NA	Intergenic	Intergenic	-3237	NM_001348738	57498		NM_020738	ENSG00000134313	KIDINS220	ARMS|SINO|VENARG	kinase D interacting substrate 220	protein-coding
218524	chr8	53808621	53809050	+	0	NA	intron (NM_213619, intron 6 of 12)	intron (NM_213619, intron 6 of 12)	34207	NM_213620	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
64200	chr14	23023021	23023280	+	0	NA	Intergenic	Intergenic	11750	NM_002797	5693		NM_002797	ENSG00000100804	PSMB5	LMPX|MB1	proteasome 20S subunit beta 5	protein-coding
111918	chr19	4720601	4721080	+	0	NA	promoter-TSS (NM_001384611)	promoter-TSS (NM_001384611)	-447	NM_001384614	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
151998	chr22	19181971	19182550	+	0	NA	intron (NM_001835, intron 29 of 31)	(CACACAC)n|Simple_repeat|Simple_repeat	-3397	NR_046298	6576		NM_005984	ENSG00000100075	SLC25A1	CIC|CMS23|CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
26662	chr10	22604651	22605430	+	0	NA	intron (NM_001330062, intron 3 of 9)	intron (NM_001330062, intron 3 of 9)	109068	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
15189	chr1	149173821	149174180	+	0	NA	Intergenic	L1PA3|LINE|L1	27146	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
115653	chr19	16127321	16127780	+	0	NA	intron (NM_005370, intron 5 of 7)	intron (NM_005370, intron 5 of 7)	-6478	NR_111904	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
11181	chr1	87333551	87334280	+	0	NA	intron (NM_001369491, intron 2 of 4)	intron (NM_001369491, intron 2 of 4)	2171	NM_001369491	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
211070	chr7	102473551	102473950	+	0	NA	TTS (NM_152892)	TTS (NM_152892)	2281	NR_039677	100616367		NR_039677	ENSG00000284596	MIR4467	-	microRNA 4467	ncRNA
101571	chr17	68046601	68047500	+	0	NA	TTS (NM_001320611)	TTS (NM_001320611)	11090	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
73496	chr15	43754651	43755200	+	0	NA	intron (NM_005313, intron 2 of 12)	AluJb|SINE|Alu	8487	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
76758	chr15	76931151	76932350	+	0	NA	promoter-TSS (NM_001271837)	promoter-TSS (NM_001271837)	1	NM_001271837	5955		NM_002902	ENSG00000117906	RCN2	E6BP|ERC-55|ERC55|TCBP49	reticulocalbin 2	protein-coding
83902	chr16	28988971	28989480	+	0	NA	intron (NM_014387, intron 7 of 10)	intron (NM_014387, intron 7 of 10)	4173	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
175605	chr4	75779351	75779650	+	0	NA	intron (NM_003715, intron 8 of 23)	Tigger1|DNA|TcMar-Tigger	54923	NM_003715	8615		NM_003715	ENSG00000138768	USO1	P115|TAP|VDP	USO1 vesicle transport factor	protein-coding
129	chr1	506101	506930	+	0	NA	Intergenic	AluJb|SINE|Alu	-11070	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
69787	chr14	99185251	99185800	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	86672	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
40589	chr11	64444801	64445000	+	0	NA	Intergenic	AluJb|SINE|Alu	-4157	NR_073177	100996455		NR_073177	ENSG00000181908	LINC02724	-	long intergenic non-protein coding RNA 2724	ncRNA
30517	chr10	79345871	79346230	+	0	NA	Intergenic	Intergenic	-1419	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
171483	chr3	196519071	196520050	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-4214	NM_001077657	255798		NM_001077657	ENSG00000214097	SMCO1	C3orf43	single-pass membrane protein with coiled-coil domains 1	protein-coding
68830	chr14	91274171	91274330	+	0	NA	intron (NM_001080414, intron 29 of 29)	intron (NM_001080414, intron 29 of 29)	-20370	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
98574	chr17	47718101	47719000	+	0	NA	Intergenic	Intergenic	-14686	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
99357	chr17	49891101	49891300	+	0	NA	Intergenic	MIRb|SINE|MIR	-43183	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
83371	chr16	25233501	25234040	+	0	NA	Intergenic	AluSx|SINE|Alu	16823	NM_001169	343		NM_001169	ENSG00000103375	AQP8	AQP-8	aquaporin 8	protein-coding
115903	chr19	16594021	16595530	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-22360	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
11888	chr1	93170851	93171950	+	0	NA	intron (NR_030761, intron 1 of 4)	LTR12C|LTR|ERV1	9013	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
228899	chr9	112819951	112820050	+	0	NA	intron (NM_001012994, intron 3 of 8)	intron (NM_001012994, intron 3 of 8)	69240	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
118988	chr19	38882751	38883050	+	0	NA	intron (NR_034146, intron 7 of 13)	LTR82A|LTR|ERVL	-4625	NM_001195833	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
226381	chr9	70340701	70341000	+	0	NA	intron (NM_015110, intron 17 of 24)	intron (NM_015110, intron 17 of 24)	73807	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
199817	chr6	127539021	127539700	+	0	NA	Intergenic	Intergenic	-20336	NM_001012279	387104		NM_001012279	ENSG00000214338	MTCL3	C6orf174|SOGA3|dJ403A15.3	MTCL family member 3	protein-coding
145092	chr20	38720601	38721000	+	0	NA	Intergenic	Intergenic	-3686	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
115754	chr19	16320551	16321300	+	0	NA	Intergenic	AluSx|SINE|Alu	-3901	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
125701	chr2	20379151	20379250	+	0	NA	Intergenic	Intergenic	-26947	NM_001352920	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
122668	chr19	49873721	49873980	+	0	NA	intron (NM_001278160, intron 1 of 4)	MER33|DNA|hAT-Charlie	2399	NM_001278159	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
176006	chr4	82218371	82218530	+	0	NA	Intergenic	Intergenic	155541	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
137841	chr2	200585771	200586330	+	0	NA	promoter-TSS (NM_001159)	promoter-TSS (NM_001159)	36	NM_001159	316		NM_001159	ENSG00000138356	AOX1	AO|AOH1	aldehyde oxidase 1	protein-coding
62482	chr13	99388521	99388780	+	0	NA	Intergenic	Intergenic	32519	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
175861	chr4	79906451	79906550	+	0	NA	3' UTR (NM_058172, exon 17 of 17)	3' UTR (NM_058172, exon 17 of 17)	79029	NR_026555	118425		NM_058168	ENSG00000251321	PCAT4	GDEP|PCA4|PCAN1	prostate cancer associated transcript 4	ncRNA
162390	chr3	48151521	48151980	+	0	NA	Intergenic	Intergenic	36667	NM_001789	993		NM_001789	ENSG00000164045	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
96666	chr17	40779501	40779930	+	0	NA	exon (NM_181537, exon 4 of 8)	exon (NM_181537, exon 4 of 8)	2835	NM_181537	342574		NM_181537	ENSG00000171446	KRT27	K25IRS3|KRT25C	keratin 27	protein-coding
44448	chr11	104897771	104898700	+	0	NA	intron (NR_034070, intron 1 of 8)	intron (NR_034070, intron 1 of 8)	435	NR_034065	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
46725	chr11	128890401	128891950	+	0	NA	promoter-TSS (NM_000890)	promoter-TSS (NM_000890)	-181	NM_001354169	3762		NM_000890	ENSG00000120457	KCNJ5	CIR|GIRK4|KATP1|KIR3.4|LQT13	potassium inwardly rectifying channel subfamily J member 5	protein-coding
16326	chr1	154223051	154223580	+	0	NA	intron (NM_001375619, intron 1 of 26)	intron (NM_001375619, intron 1 of 26)	2011	NM_001375631	9898		NM_014847	ENSG00000143569	UBAP2L	NEDLBF|NICE-4|NICE4	ubiquitin associated protein 2 like	protein-coding
145149	chr20	38832751	38833490	+	0	NA	intron (NM_001172735, intron 1 of 9)	L1MD1|LINE|L1	27423	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
196863	chr6	49453251	49453430	+	0	NA	intron (NM_000255, intron 5 of 12)	intron (NM_000255, intron 5 of 12)	9913	NM_000255	4594		NM_000255	ENSG00000146085	MMUT	MCM|MUT	methylmalonyl-CoA mutase	protein-coding
84117	chr16	29669851	29670280	+	0	NA	3' UTR (NM_001030288, exon 2 of 2)	3' UTR (NM_001030288, exon 2 of 2)	6818	NM_003123	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
134727	chr2	144548451	144549130	+	0	NA	intron (NR_110570, intron 1 of 2)	MIR1_Amn|SINE|MIR	-24346	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
65228	chr14	49853701	49854450	+	0	NA	promoter-TSS (NR_145670)	promoter-TSS (NR_145670)	-161	NR_145670	378707		NR_145670	ENSG00000278771	RN7SL3	7L30.2|RN7SL631P|RNSRP3	RNA component of signal recognition particle 7SL3	scRNA
204729	chr7	5557801	5558310	+	0	NA	Intergenic	Intergenic	-27454	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
17275	chr1	156421271	156422580	+	0	NA	promoter-TSS (NR_168072)	promoter-TSS (NR_168072)	-156	NR_135268	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
180964	chr5	35708451	35708550	+	0	NA	intron (NM_024867, intron 18 of 36)	intron (NM_024867, intron 18 of 36)	90637	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
197927	chr6	89640621	89641130	+	0	NA	intron (NR_111915, intron 1 of 3)	AluSq2|SINE|Alu	-2128	NM_020466	57226		NM_020466	ENSG00000083099	LYRM2	DJ122O8.2	LYR motif containing 2	protein-coding
55834	chr12	108982571	108983330	+	0	NA	intron (NM_018711, intron 2 of 15)	intron (NM_018711, intron 2 of 15)	38118	NM_018711	55530		NM_018711	ENSG00000166111	SVOP	SLC22B4	SV2 related protein	protein-coding
205512	chr7	18289951	18290530	+	0	NA	5' UTR (NM_001321896, exon 1 of 13)	5' UTR (NM_001321896, exon 1 of 13)	148	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
169880	chr3	177394101	177394650	+	0	NA	Intergenic	L1PA2|LINE|L1	-47546	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
235667	chrX	48575801	48576350	+	0	NA	intron (NM_006743, intron 3 of 6)	intron (NM_006743, intron 3 of 6)	1591	NM_006743	5935		NM_006743	ENSG00000102317	RBM3	IS1-RNPL|RNPL	RNA binding motif protein 3	protein-coding
208795	chr7	73596551	73596880	+	0	NA	exon (NM_032954, exon 11 of 17)	exon (NM_032954, exon 11 of 17)	-18136	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
105669	chr18	2609671	2609830	+	0	NA	intron (NM_006101, intron 15 of 16)	Tigger9b|DNA|TcMar-Tigger	38193	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
97802	chr17	44777301	44777500	+	0	NA	intron (NM_001318933, intron 21 of 26)	intron (NM_001318933, intron 21 of 26)	18412	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
176935	chr4	102865551	102865850	+	0	NA	intron (NM_181890, intron 1 of 7)	L2|LINE|L2	3193	NM_181893	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
114897	chr19	13919051	13919350	+	0	NA	exon (NM_017721, exon 11 of 29)	exon (NM_017721, exon 11 of 29)	12999	NM_017721	54862		NM_017721	ENSG00000132024	CC2D1A	Aki-1|FREUD-1|Freud-1/Aki1|Lgd2|MRT3|TAPE	coiled-coil and C2 domain containing 1A	protein-coding
35530	chr11	1568171	1570030	+	0	NA	intron (NM_004420, intron 1 of 6)	intron (NM_004420, intron 1 of 6)	3171	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
18464	chr1	161578851	161579150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2339	NM_201563	9103		NM_201563		FCGR2C	CD32|CD32C|CDW32|FCG2|FCRIIC|FcgammaRIIc|IGFR2	Fc gamma receptor IIc (gene/pseudogene)	protein-coding
154817	chr22	37045021	37045350	+	0	NA	Intergenic	Intergenic	-6551	NM_001282684	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
58079	chr12	124564371	124564800	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	3027	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
91910	chr17	7310971	7311380	+	0	NA	intron (NM_001143762, intron 3 of 5)	intron (NM_001143762, intron 3 of 5)	2800	NM_001143762	1984		NM_001970	ENSG00000132507	EIF5A	EIF-5A|EIF5A1|FABAS|eIF-4D|eIF5AI	eukaryotic translation initiation factor 5A	protein-coding
73850	chr15	50046401	50046800	+	0	NA	intron (NM_024837, intron 4 of 27)	intron (NM_024837, intron 4 of 27)	66779	NR_073598	79895		NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
116633	chr19	18302871	18304000	+	0	NA	Intergenic	Intergenic	19641	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
72330	chr15	31271201	31271600	+	0	NA	Intergenic	Intergenic	-40538	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
215081	chr7	154952951	154953350	+	0	NA	intron (NM_007349, intron 16 of 20)	intron (NM_007349, intron 16 of 20)	24633	NR_024477	100132707		NR_024476		PAXIP1-AS2	PAXIP1OS	PAXIP1 antisense RNA 2	ncRNA
105580	chr18	158051	159430	+	0	NA	intron (NM_005151, intron 1 of 15)	CpG	183	NM_005151	9097		NM_005151	ENSG00000101557	USP14	TGT|Ubp6	ubiquitin specific peptidase 14	protein-coding
196470	chr6	43539151	43539450	+	0	NA	intron (NR_144392, intron 21 of 32)	intron (NR_144392, intron 21 of 32)	22211	NM_203290	9533		NM_004875	ENSG00000171453	POLR1C	AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3	RNA polymerase I and III subunit C	protein-coding
67337	chr14	69651001	69651400	+	0	NA	intron (NM_014734, intron 1 of 5)	MIR3|SINE|MIR	39604	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
50030	chr12	43761451	43762150	+	0	NA	intron (NM_001145256, intron 2 of 11)	intron (NM_001145256, intron 2 of 11)	2849	NM_016123	51135		NM_016123	ENSG00000198001	IRAK4	IMD67|IPD1|IRAK-4|NY-REN-64|REN64	interleukin 1 receptor associated kinase 4	protein-coding
22038	chr1	210394121	210394670	+	0	NA	intron (NM_001170564, intron 4 of 9).2	intron (NM_001170564, intron 4 of 9).2	65029	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
66671	chr14	63908571	63909000	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	55781	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
150319	chr21	42012921	42013330	+	0	NA	intron (NR_119384, intron 1 of 1)	intron (NR_119384, intron 1 of 1)	-2765	NM_001320729	49854		NM_020727	ENSG00000173276	ZBTB21	ZNF295	zinc finger and BTB domain containing 21	protein-coding
110399	chr19	1947001	1947600	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	6128	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
5909	chr1	26832351	26832450	+	0	NA	intron (NM_032283, intron 1 of 7)	intron (NM_032283, intron 1 of 7)	5712	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
167029	chr3	126473151	126473330	+	0	NA	intron (NR_104249, intron 1 of 8)	intron (NR_104249, intron 1 of 8)	2651	NM_025112	79364		NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
218979	chr8	61712901	61713100	+	0	NA	intron (NM_032466, intron 1 of 13)	intron (NM_032466, intron 1 of 13)	1592	NM_004318	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
98713	chr17	47970551	47973000	+	0	NA	intron (NM_176096, intron 2 of 13)	AluSp|SINE|Alu	662	NM_001278198	80279		NM_025197	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding
227123	chr9	86099151	86100080	+	0	NA	promoter-TSS (NM_016548)	promoter-TSS (NM_016548)	-57	NM_016548	51280		NM_016548	ENSG00000135052	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
27806	chr10	37306451	37306550	+	0	NA	Intergenic	Intergenic	-2686	NR_104061	101929520		NR_104061	ENSG00000290801	LINC00993	-	long intergenic non-protein coding RNA 993	ncRNA
116734	chr19	18464971	18465730	+	0	NA	intron (NM_006532, intron 4 of 11)	intron (NM_006532, intron 4 of 11)	-27217	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
7463	chr1	33094921	33095900	+	0	NA	intron (NM_001376724, intron 6 of 9)	L1ME4a|LINE|L1	13232	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
131695	chr2	97737671	97737830	+	0	NA	intron (NM_207519, intron 3 of 5)	intron (NM_207519, intron 3 of 5)	4450	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
85382	chr16	50283201	50283400	+	0	NA	intron (NM_001114, intron 1 of 25)	MLT1K|LTR|ERVL-MaLR	-9316	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
224825	chr9	26945621	26945880	+	0	NA	intron (NM_001321546, intron 1 of 12)	intron (NM_001321546, intron 1 of 12)	-1240	NM_001099223	80173		NM_025103	ENSG00000096872	IFT74	BBS22|CCDC2|CMG-1|CMG1|JBTS40|SPGF58	intraflagellar transport 74	protein-coding
209303	chr7	76007251	76007550	+	0	NA	intron (NM_001317787, intron 3 of 6)	AluSx|SINE|Alu	-12805	NM_031925	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
138498	chr2	207151001	207151200	+	0	NA	intron (NM_001270943, intron 1 of 3)	MER113|DNA|hAT-Charlie	14848	NM_003709	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
70268	chr14	101721251	101723650	+	0	NA	Intergenic	LTR16|LTR|ERVL	-7987	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
54930	chr12	96205601	96206430	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	11640	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
10447	chr1	66274471	66275500	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-57123	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
88146	chr16	81630551	81631400	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	19627	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
204268	chr7	2637571	2638630	+	0	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	6114	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
163489	chr3	50978551	50978650	+	0	NA	intron (NM_004947, intron 5 of 52)	L1PA3|LINE|L1	303520	NR_039950	100616138		NR_039950	ENSG00000272543	MIR4787	mir-4787	microRNA 4787	ncRNA
85518	chr16	50779671	50780030	+	0	NA	exon (NM_001378753, exon 8 of 18)	exon (NM_001378753, exon 8 of 18)	-26822	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
118072	chr19	34349771	34350810	+	0	NA	intron (NM_014686, intron 12 of 13)	L2a|LINE|L2	-14450	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
49033	chr12	14375901	14376300	+	0	NA	intron (NM_001286515, intron 1 of 12)	intron (NM_001286515, intron 1 of 12)	-9181	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
222570	chr8	140623201	140624400	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	11833	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
162127	chr3	46939601	46939800	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	36801	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
147739	chr20	62401301	62401700	+	0	NA	intron (NM_031215, intron 1 of 9)	intron (NM_031215, intron 1 of 9)	5783	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
46959	chr11	134592401	134592650	+	0	NA	Intergenic	LTR53B|LTR|ERVL	-143420	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
95335	chr17	35748551	35749100	+	0	NA	intron (NM_139285, intron 3 of 5)	intron (NM_139285, intron 3 of 5)	4414	NM_139285	246176		NM_139285	ENSG00000270765	GAS2L2	CILD41|GAR17	growth arrest specific 2 like 2	protein-coding
114436	chr19	12693501	12694050	+	0	NA	intron (NM_032301, intron 3 of 9)	AluSx1|SINE|Alu	2856	NM_032301	84261		NM_032301	ENSG00000132004	FBXW9	Fbw9|MEC-15	F-box and WD repeat domain containing 9	protein-coding
215200	chr7	155803001	155803200	+	0	NA	exon (NM_000193, exon 3 of 3)	exon (NM_000193, exon 3 of 3)	6063	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
47116	chr12	678421	678880	+	0	NA	Intergenic	Intergenic	-15205	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
201941	chr6	151493771	151494600	+	0	NA	exon (NM_025059, exon 1 of 11)	exon (NM_025059, exon 1 of 11)	168	NM_025059	80129		NM_025059	ENSG00000120262	CCDC170	C6orf97|bA282P11.1	coiled-coil domain containing 170	protein-coding
139007	chr2	218368611	218369080	+	0	NA	promoter-TSS (NR_110573)	promoter-TSS (NR_110573)	-943	NR_110573	101928513		NR_110573	ENSG00000225062	CATIP-AS1	-	CATIP antisense RNA 1	ncRNA
84159	chr16	29785021	29785750	+	0	NA	Intergenic	CpG	-5366	NM_001256269	3835		NM_007317	ENSG00000079616	KIF22	A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2	kinesin family member 22	protein-coding
209009	chr7	74288001	74288550	+	0	NA	Intergenic	Intergenic	-1132	NM_032421	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
219513	chr8	74048651	74049050	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	57458	NM_015364	23643		NM_015364	ENSG00000154589	LY96	ESOP-1|MD-2|MD2|ly-96	lymphocyte antigen 96	protein-coding
230401	chr9	128110821	128111280	+	0	NA	TTS (NR_033374)	TTS (NR_033374)	7684	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
162292	chr3	47408551	47409350	+	0	NA	exon (NM_015466, exon 16 of 25)	exon (NM_015466, exon 16 of 25)	27929	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
216710	chr8	22245901	22247100	+	0	NA	intron (NM_001722, intron 2 of 8)	AluSg4|SINE|Alu	1367	NM_001722	661		NM_001722	ENSG00000168495	POLR3D	BN51T|C53|RPC4|RPC53|TSBN51	RNA polymerase III subunit D	protein-coding
138466	chr2	206543121	206543380	+	0	NA	intron (NM_003812, intron 5 of 25)	intron (NM_003812, intron 5 of 25)	-99237	NM_001102659	200726		NM_001102659	ENSG00000235118	FAM237A	-	family with sequence similarity 237 member A	protein-coding
140902	chr2	237687071	237688480	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-4389	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
102638	chr17	76026921	76027180	+	0	NA	intron (NM_001320747, intron 1 of 21)	intron (NM_001320747, intron 1 of 21)	256	NM_001320747	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
147865	chr20	62820351	62820830	+	0	NA	intron (NM_001853, intron 5 of 31)	intron (NM_001853, intron 5 of 31)	3540	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
224547	chr9	19374701	19375630	+	0	NA	TTS (NM_017925)	TTS (NM_017925)	5071	NM_001010	6194		NM_001010	ENSG00000137154	RPS6	S6|eS6	ribosomal protein S6	protein-coding
181205	chr5	39159271	39159630	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	60113	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
179424	chr4	184282101	184283430	+	0	NA	Intergenic	MER94|DNA|hAT-Blackjack	-64892	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
204296	chr7	2670271	2670430	+	0	NA	Intergenic	Intergenic	-9172	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
226002	chr9	41352551	41353280	+	0	NA	Intergenic	GSATII|Satellite|centr	-5947	NR_148348	107984035		NR_148348		LOC107984035	-	uncharacterized LOC107984035	ncRNA
222327	chr8	133519851	133521230	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	51347	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
67906	chr14	74583901	74584300	+	0	NA	intron (NM_000428, intron 3 of 35)	intron (NM_000428, intron 3 of 35)	28137	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
12021	chr1	96739551	96739850	+	0	NA	intron (NM_001300990, intron 2 of 12)	AluYm1|SINE|Alu	17062	NR_125356	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
191829	chr6	14820021	14820280	+	0	NA	Intergenic	Intergenic	-425919	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
222243	chr8	133171151	133171250	+	0	NA	Intergenic	Intergenic	-19839	NM_001204869	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
184860	chr5	112162401	112162600	+	0	NA	TTS (NR_144931)	TTS (NR_144931)	1015	NR_002922	654322		NR_002922	ENSG00000238363	SNORA13	ACA13	small nucleolar RNA, H/ACA box 13	snoRNA
140652	chr2	233801451	233801550	+	0	NA	intron (NM_001367507, intron 14 of 41)	MLT2C1|LTR|ERVL	25776	NM_001367507	339766		NM_001287395	ENSG00000185038	MROH2A	HEATR7B1	maestro heat like repeat family member 2A	protein-coding
83470	chr16	27371701	27372080	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-30284	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
8073	chr1	38996451	38997750	+	0	NA	intron (NM_001136275, intron 1 of 3)	intron (NM_001136275, intron 1 of 3)	5824	NM_024595	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
237452	chrX	119692901	119694280	+	0	NA	promoter-TSS (NM_145800)	promoter-TSS (NM_145800)	-422	NM_145800	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
216567	chr8	21913111	21914360	+	0	NA	promoter-TSS (NM_003974)	promoter-TSS (NM_003974)	-45	NM_001317800	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
30559	chr10	79712221	79712630	+	0	NA	exon (NM_001278495, exon 7 of 7)	exon (NM_001278495, exon 7 of 7)	9198	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
147951	chr20	62959271	62960350	+	0	NA	intron (NM_022082, intron 3 of 12)	CpG	7101	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
182422	chr5	61408371	61409330	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	76592	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
9854	chr1	54277321	54277780	+	0	NA	intron (NM_145716, intron 5 of 17)	MIR1_Amn|SINE|MIR	41107	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
157600	chr22	46011871	46012350	+	0	NA	Intergenic	Intergenic	5494	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
99319	chr17	49833471	49833630	+	0	NA	3' UTR (NM_007067, exon 15 of 15)	3' UTR (NM_007067, exon 15 of 15)	-12336	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
126659	chr2	29004521	29004880	+	0	NA	intron (NM_199280, intron 6 of 19)	(GT)n|Simple_repeat|Simple_repeat	23402	NM_001321538	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
119885	chr19	41541921	41542880	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	6902	NR_110724	101927931		NR_110724	ENSG00000270164	LINC01480	-	long intergenic non-protein coding RNA 1480	ncRNA
66520	chr14	61734071	61734230	+	0	NA	exon (NM_001243084, exon 8 of 15)	exon (NM_001243084, exon 8 of 15)	14939	NR_045406	100750247		NR_045406		HIF1A-AS2	3'aHIF-1A|aHIF	HIF1A antisense RNA 2	ncRNA
109902	chr19	1281651	1281750	+	0	NA	Intergenic	Intergenic	-4173	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
89790	chr16	89487471	89488410	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	2621	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
135533	chr2	162313921	162314630	+	0	NA	intron (NM_022168, intron 1 of 15)	intron (NM_022168, intron 1 of 15)	4409	NM_022168	64135		NM_022168	ENSG00000115267	IFIH1	AGS7|Hlcd|IDDM19|IMD95|MDA-5|MDA5|RLR-2|SGMRT1	interferon induced with helicase C domain 1	protein-coding
170221	chr3	184172601	184173000	+	0	NA	3' UTR (NM_004423, exon 15 of 15)	3' UTR (NM_004423, exon 15 of 15)	-2046	NM_001025205	1173		NM_004068	ENSG00000161203	AP2M1	AP50|CLAPM1|MRD60|mu2	adaptor related protein complex 2 subunit mu 1	protein-coding
51051	chr12	49794551	49794850	+	0	NA	intron (NM_001037806, intron 8 of 12)	intron (NM_001037806, intron 8 of 12)	33713	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
55059	chr12	96472321	96472580	+	0	NA	Intergenic	Intergenic	-17127	NM_001306084	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
167323	chr3	128736101	128736700	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	10217	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
16018	chr1	152107551	152107850	+	0	NA	exon (NM_007113, exon 3 of 3)	exon (NM_007113, exon 3 of 3)	7754	NM_007113	7062		NM_007113	ENSG00000159450	TCHH	THH|THL|TRHY|UHS3	trichohyalin	protein-coding
150013	chr21	37136321	37136650	+	0	NA	intron (NM_001001894, intron 18 of 45)	Tigger1|DNA|TcMar-Tigger	53538	NM_003316	7267		NM_003316	ENSG00000182670	TTC3	DCRR1|RNF105|TPRDIII	tetratricopeptide repeat domain 3	protein-coding
110093	chr19	1525771	1526300	+	0	NA	intron (NM_001243079, intron 3 of 13)	intron (NM_001243079, intron 3 of 13)	1958	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
147601	chr20	62063371	62064500	+	0	NA	promoter-TSS (NR_130463)	promoter-TSS (NR_130463)	-867	NR_130463	100422838		NR_130463	ENSG00000265306	MIR3195	-	microRNA 3195	ncRNA
239204	chrY	12918401	12919730	+	0	NA	non-coding (NR_136724, exon 15 of 15)	non-coding (NR_136724, exon 15 of 15)	13360	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
112395	chr19	6107251	6107830	+	0	NA	intron (NM_000635, intron 1 of 17)	AluSz|SINE|Alu	2960	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
157950	chr22	49801501	49801900	+	0	NA	intron (NR_146335, intron 4 of 13)	intron (NR_146335, intron 4 of 13)	22631	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
152315	chr22	20358071	20358230	+	0	NA	Intergenic	CpG	19237	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
144163	chr20	34067801	34068000	+	0	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	18781	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
25204	chr10	5698171	5698330	+	0	NA	intron (NM_017782, intron 1 of 20)	MLT1H|LTR|ERVL-MaLR	13412	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
126909	chr2	32553601	32554060	+	0	NA	intron (NM_016252, intron 65 of 73)	intron (NM_016252, intron 65 of 73)	20988	NR_125793	103752586		NR_125793	ENSG00000290864	BIRC6-AS2	linc-birc6|megamind	BIRC6 antisense RNA 2	ncRNA
101191	chr17	65345321	65345780	+	0	NA	Intergenic	Intergenic	-111991	NR_131984	105827617		NR_131984	ENSG00000263520	LINC02563	CRAT40	long intergenic non-protein coding RNA 2563	ncRNA
167247	chr3	128495301	128496030	+	0	NA	intron (NR_125398, intron 2 of 2)	intron (NR_125398, intron 2 of 2)	-2464	NM_032638	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
89765	chr16	89459801	89460030	+	0	NA	intron (NM_001256182, intron 1 of 13)	AluJr|SINE|Alu	28997	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109652	chr19	1008151	1008250	+	0	NA	exon (NM_138690, exon 6 of 9)	exon (NM_138690, exon 6 of 9)	7781	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
236111	chrX	57285151	57285450	+	0	NA	Intergenic	Intergenic	-1377	NM_174912	158584		NM_174912	ENSG00000165591	FAAH2	AMDD	fatty acid amide hydrolase 2	protein-coding
95213	chr17	35248151	35248250	+	0	NA	intron (NM_144975, intron 1 of 4)	MER89-int|LTR|ERV1	5128	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
164743	chr3	69037321	69037830	+	0	NA	intron (NM_001363879, intron 8 of 16)	AluSq2|SINE|Alu	11460	NR_036087	100422859		NR_036087	ENSG00000265355	MIR3136	mir-3136	microRNA 3136	ncRNA
56388	chr12	113184121	113186730	+	0	NA	promoter-TSS (NM_001111322)	promoter-TSS (NM_001111322)	53	NM_024072	79039		NM_024072	ENSG00000123064	DDX54	DP97	DEAD-box helicase 54	protein-coding
215814	chr8	2814421	2814680	+	0	NA	intron (NR_168445, intron 2 of 10)	intron (NR_168445, intron 2 of 10)	-86099	NR_125425	101927815		NR_125423	ENSG00000254319	LINC03021	-	long intergenic non-protein coding RNA 3021	ncRNA
174229	chr4	37824401	37824680	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2146	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
212483	chr7	128535621	128536530	+	0	NA	Intergenic	AluSz|SINE|Alu	59327	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
103171	chr17	77436151	77436450	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-14449	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
20225	chr1	193166121	193166780	+	0	NA	intron (NM_024529, intron 10 of 16)	intron (NM_024529, intron 10 of 16)	20163	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
185466	chr5	131280451	131280550	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	16447	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
92575	chr17	9227871	9228230	+	0	NA	intron (NM_004822, intron 6 of 6)	L2b|LINE|L2	-48932	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
134138	chr2	134177021	134177480	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	50125	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
12856	chr1	110081721	110082080	+	0	NA	promoter-TSS (NR_126382)	promoter-TSS (NR_126382)	-788	NR_126382	104355139		NR_126382	ENSG00000258673	LINC01397	-	long intergenic non-protein coding RNA 1397	ncRNA
151186	chr21	45080021	45080430	+	0	NA	intron (NM_001346688, intron 1 of 11)	L2a|LINE|L2	5174	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
13336	chr1	113802851	113803150	+	0	NA	intron (NM_018364, intron 1 of 6)	L1MC1|LINE|L1	9476	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
43735	chr11	86061571	86063150	+	0	NA	intron (NM_001206947, intron 1 of 18)	AluSq|SINE|Alu	6724	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
166961	chr3	125356801	125357800	+	0	NA	promoter-TSS (NM_001348433)	promoter-TSS (NM_001348433)	-20	NM_001348433	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
99117	chr17	49216901	49217300	+	0	NA	intron (NM_016428, intron 2 of 7)	intron (NM_016428, intron 2 of 7)	6393	NM_016428	51225		NM_016428	ENSG00000108798	ABI3	NESH|SSH3BP3	ABI family member 3	protein-coding
109535	chr19	860401	861130	+	0	NA	exon (NM_001317335, exon 2 of 5)	exon (NM_001317335, exon 2 of 5)	1101	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
170843	chr3	190514701	190515880	+	0	NA	intron (NR_157353, intron 1 of 9)	MIRb|SINE|MIR	1205	NM_134470	3556		NM_002182	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
224792	chr9	22148071	22148520	+	0	NA	Intergenic	Intergenic	-138982	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
132290	chr2	105071201	105071700	+	0	NA	intron (NM_182640, intron 3 of 10)	intron (NM_182640, intron 3 of 10)	31494	NR_110227	101927492		NR_110227	ENSG00000231851	MRPS9-AS1	UTAT33	MRPS9 antisense RNA 1	ncRNA
145568	chr20	44388521	44389050	+	0	NA	intron (NR_109949, intron 2 of 3)	intron (NR_109949, intron 2 of 3)	6921	NR_109949	101927219		NR_109949	ENSG00000229005	HNF4A-AS1	uc002xlx	HNF4A antisense RNA 1	ncRNA
158116	chr22	50044701	50045250	+	0	NA	intron (NM_001350317, intron 8 of 13)	CpG	13252	NM_001350317	164714		NM_001080447	ENSG00000138892	TTLL8	-	tubulin tyrosine ligase like 8	protein-coding
118196	chr19	35134751	35134850	+	0	NA	5' UTR (NM_139284, exon 1 of 9)	5' UTR (NM_139284, exon 1 of 9)	259	NM_139284	163175		NM_139284	ENSG00000153902	LGI4	AMC1|AMCNMY|LGIL3	leucine rich repeat LGI family member 4	protein-coding
3467	chr1	15949301	15950700	+	0	NA	intron (NM_001324138, intron 2 of 14)	intron (NM_001324138, intron 2 of 14)	26101	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
27281	chr10	30346601	30347000	+	0	NA	intron (NM_018109, intron 1 of 8)	intron (NM_018109, intron 1 of 8)	2478	NM_018109	55149		NM_018109	ENSG00000107951	MTPAP	PAPD1|SPAX4|TENT6	mitochondrial poly(A) polymerase	protein-coding
56512	chr12	116480471	116480630	+	0	NA	Intergenic	Intergenic	-52232	NR_039683	100616309		NR_039683	ENSG00000264037	MIR4472-2	-	microRNA 4472-2	ncRNA
218690	chr8	58532851	58533230	+	0	NA	Intergenic	L1M1|LINE|L1	-19884	NM_001348341	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
172070	chr4	1029801	1030400	+	0	NA	Intergenic	Intergenic	17636	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
139834	chr2	230426651	230426950	+	0	NA	intron (NM_001080391, intron 2 of 28)	L1ME3G|LINE|L1	10044	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
218946	chr8	60948571	60948730	+	0	NA	Intergenic	Intergenic	19098	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
83609	chr16	28195601	28196100	+	0	NA	intron (NM_015171, intron 1 of 23)	intron (NM_015171, intron 1 of 23)	16115	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
21175	chr1	203777801	203778200	+	0	NA	Intergenic	AluJb|SINE|Alu	8362	NM_001282878	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
51826	chr12	53448601	53449350	+	0	NA	Intergenic	AluSc|SINE|Alu	-3127	NM_001128914	5094		NM_005016	ENSG00000197111	PCBP2	HNRNPE2|HNRPE2|hnRNP-E2	poly(rC) binding protein 2	protein-coding
188533	chr5	156067421	156067730	+	0	NA	Intergenic	L1HS|LINE|L1	-259589	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
164644	chr3	66483221	66483980	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	16454	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
9384	chr1	47318651	47318750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3804	NM_001377417	6491		NM_003035	ENSG00000123473	STIL	MCPH7|SIL	STIL centriolar assembly protein	protein-coding
87627	chr16	74406771	74406930	+	0	NA	intron (NR_135170, intron 1 of 1)	CpG	369	NR_135170	105376772		NR_135170		LOC105376772	-	uncharacterized LOC105376772	ncRNA
77015	chr15	78539771	78542480	+	0	NA	intron (NM_001330676, intron 1 of 8)	L2c|LINE|L2	439	NM_001330676	5685		NM_002789	ENSG00000041357	PSMA4	HC9|HsT17706|PSC9	proteasome 20S subunit alpha 4	protein-coding
140535	chr2	233245671	233246030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5721	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
32370	chr10	102398901	102400250	+	0	NA	intron (NM_001288724, intron 13 of 22)	CpG	3870	NM_001261403	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
75570	chr15	67063901	67064400	+	0	NA	promoter-TSS (NR_135686)	promoter-TSS (NR_135686)	32	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
166855	chr3	123328751	123329150	+	0	NA	intron (NM_183357, intron 5 of 20)	intron (NM_183357, intron 5 of 20)	87392	NM_001199642	111		NM_183357	ENSG00000173175	ADCY5	AC5|DSKOD|FDFM	adenylate cyclase 5	protein-coding
37386	chr11	17050271	17050430	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-1536	NR_045002	10819		NR_045002	ENSG00000184669	OR7E14P	OR11-5|OR7E151P	olfactory receptor family 7 subfamily E member 14 pseudogene	pseudo
5932	chr1	26864101	26866400	+	0	NA	TTS (NM_006142)	TTS (NM_006142)	2101	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
222821	chr8	142476971	142477200	+	0	NA	intron (NM_001702, intron 4 of 30)	intron (NM_001702, intron 4 of 30)	27436	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
84357	chr16	30219071	30219230	+	0	NA	Intergenic	Intergenic	-12223	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
208822	chr7	73666121	73666550	+	0	NA	Intergenic	Intergenic	-1496	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
26969	chr10	26697101	26698680	+	0	NA	intron (NM_001321978, intron 1 of 9)	CpG	189	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
234409	chrX	16785721	16787600	+	0	NA	intron (NM_001168683, intron 1 of 7)	CpG	194	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
104407	chr17	81052921	81053180	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	-4684	NM_001385147	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
17929	chr1	160290201	160290400	+	0	NA	intron (NM_001098398, intron 32 of 32)	intron (NM_001098398, intron 32 of 32)	-5149	NR_036492	5824		NM_002857	ENSG00000162735	PEX19	D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1	peroxisomal biogenesis factor 19	protein-coding
206488	chr7	33059901	33060100	+	0	NA	intron (NM_001374336, intron 1 of 10)	AluJb|SINE|Alu	2776	NM_001002010	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
87974	chr16	80568521	80568780	+	0	NA	intron (NR_104666, intron 1 of 2)	intron (NR_104666, intron 1 of 2)	960	NR_104665	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
20672	chr1	200353301	200353700	+	0	NA	intron (NR_040064, intron 4 of 4)	intron (NR_040064, intron 4 of 4)	20292	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
13907	chr1	119886221	119886500	+	0	NA	Intergenic	Intergenic	10155	NM_021794	11085		NM_021794	ENSG00000134249	ADAM30	svph4	ADAM metallopeptidase domain 30	protein-coding
165228	chr3	73001071	73001800	+	0	NA	intron (NM_001318025, intron 2 of 7)	AluJb|SINE|Alu	4624	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
75621	chr15	67137171	67137950	+	0	NA	promoter-TSS (NM_001145103)	promoter-TSS (NM_001145103)	-461	NM_001145103	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
71629	chr14	106721471	106721630	+	0	NA	Intergenic	L1M4b|LINE|L1	129449	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
66869	chr14	65076521	65077050	+	0	NA	intron (NM_145112, intron 3 of 3)	intron (NM_145112, intron 3 of 3)	-13133	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
78550	chr15	92981401	92982000	+	0	NA	intron (NM_001271, intron 24 of 38)	intron (NM_001271, intron 24 of 38)	77301	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
235305	chrX	42586201	42586600	+	0	NA	Intergenic	L1MD2|LINE|L1	191763	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
133675	chr2	127075901	127076350	+	0	NA	intron (NM_139345, intron 2 of 15)	intron (NM_139345, intron 2 of 15)	5940	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
79502	chr16	790271	790430	+	0	NA	exon (NM_022092, exon 6 of 22)	exon (NM_022092, exon 6 of 22)	1730	NM_022092	63922		NM_022092	ENSG00000127586	CHTF18	C16orf41|C321D2.2|C321D2.3|C321D2.4|CHL12|Ctf18|RUVBL	chromosome transmission fidelity factor 18	protein-coding
53375	chr12	64676901	64677550	+	0	NA	intron (NR_040718, intron 1 of 3)	MER3|DNA|hAT-Charlie	-54620	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
142539	chr20	5100751	5101450	+	0	NA	intron (NM_001009923, intron 4 of 4)	intron (NM_001009923, intron 4 of 4)	11976	NM_001009923	29058		NM_014145	ENSG00000089063	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
173921	chr4	25311471	25311630	+	0	NA	Intergenic	AluY|SINE|Alu	-1224	NM_001318148	29063		NM_014150	ENSG00000168228	ZCCHC4	HSPC052|ZGRF4	zinc finger CCHC-type containing 4	protein-coding
206615	chr7	35841201	35841400	+	0	NA	intron (NM_001788, intron 2 of 12)	intron (NM_001788, intron 2 of 12)	40081	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
83063	chr16	22341651	22342100	+	0	NA	Intergenic	AluSz|SINE|Alu	32744	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
153082	chr22	23380701	23381100	+	0	NA	intron (NR_037839, intron 1 of 6)	intron (NR_037839, intron 1 of 6)	1226	NR_037839	649264		NR_037839		CES5AP1	-	carboxylesterase 5A pseudogene 1	pseudo
180184	chr5	1483171	1483330	+	0	NA	intron (NM_024830, intron 6 of 13)	intron (NM_024830, intron 6 of 13)	27606	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
227770	chr9	93117621	93117880	+	0	NA	Intergenic	AluSz6|SINE|Alu	16501	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
53423	chr12	64802251	64802650	+	0	NA	intron (NM_001330187, intron 3 of 13)	intron (NM_001330187, intron 3 of 13)	21695	NM_001330188	23329		NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding
158733	chr3	8938021	8938280	+	0	NA	intron (NM_020165, intron 6 of 12)	intron (NM_020165, intron 6 of 12)	25322	NM_020165	56852		NM_020165	ENSG00000070950	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
28704	chr10	61342971	61343130	+	0	NA	Intergenic	LTR33|LTR|ERVL	-109589	NR_120643	101928781		NR_120643		TMEM26-AS1	-	TMEM26 antisense RNA 1	ncRNA
33228	chr10	114099921	114100380	+	0	NA	Intergenic	Intergenic	56284	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
187315	chr5	141616521	141617130	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	2175	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
90676	chr17	1715801	1718380	+	0	NA	promoter-TSS (NR_028504)	promoter-TSS (NR_028504)	567	NM_001163673	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
182950	chr5	71218651	71218980	+	0	NA	intron (NR_146391, intron 3 of 9)	MLT1A|LTR|ERVL-MaLR	-10684	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
205016	chr7	6486701	6486900	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-2648	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
174047	chr4	26879871	26880480	+	0	NA	intron (NM_020860, intron 1 of 11)	L2a|LINE|L2	19334	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
59142	chr13	21456751	21457250	+	0	NA	intron (NM_153251, intron 1 of 11)	intron (NM_153251, intron 1 of 11)	2303	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
237920	chrX	132017301	132017580	+	0	NA	Intergenic	Intergenic	-5862	NM_001042453	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
136785	chr2	181467951	181468050	+	0	NA	intron (NM_000885, intron 2 of 27)	intron (NM_000885, intron 2 of 27)	10614	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
115830	chr19	16494921	16495180	+	0	NA	intron (NM_145046, intron 2 of 8)	AluSz|SINE|Alu	1117	NM_145046	125972		NM_145046	ENSG00000269058	CALR3	CMH19|CRT2|CT93	calreticulin 3	protein-coding
67139	chr14	68684571	68684730	+	0	NA	Intergenic	Intergenic	-55863	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
143202	chr20	24951101	24951830	+	0	NA	intron (NM_003650, intron 1 of 3)	intron (NM_003650, intron 1 of 3)	2196	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
96547	chr17	40365671	40366030	+	0	NA	Intergenic	AluSp|SINE|Alu	-1113	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
114391	chr19	12609021	12609280	+	0	NA	intron (NM_020714, intron 2 of 4)	intron (NM_020714, intron 2 of 4)	1663	NM_020714	57474		NM_020714	ENSG00000188033	ZNF490	-	zinc finger protein 490	protein-coding
154311	chr22	31955251	31955350	+	0	NA	intron (NM_003405, intron 1 of 1)	intron (NM_003405, intron 1 of 1)	-9938	NM_015372	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
73418	chr15	43093271	43093630	+	0	NA	intron (NM_174916, intron 1 of 46)	intron (NM_174916, intron 1 of 46)	12588	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
185498	chr5	131314151	131314680	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluJr4|SINE|Alu	50362	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
61745	chr13	74230521	74231880	+	0	NA	promoter-TSS (NR_144451)	promoter-TSS (NR_144451)	-244	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
14112	chr1	120930271	120930430	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-12250	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
12391	chr1	101282501	101282900	+	0	NA	Intergenic	L2|LINE|L2	-41137	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
158634	chr3	4980101	4980780	+	0	NA	promoter-TSS (NR_037903)	promoter-TSS (NR_037903)	-479	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
182600	chr5	66064921	66065180	+	0	NA	intron (NM_001006600, intron 21 of 23)	intron (NM_001006600, intron 21 of 23)	-79250	NM_001077199	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
123818	chr19	55177771	55178200	+	0	NA	intron (NM_001297774, intron 1 of 6)	L2c|LINE|L2	1363	NM_001297774	6861		NM_003180	ENSG00000129990	SYT5	-	synaptotagmin 5	protein-coding
144310	chr20	34822121	34822200	+	0	NA	promoter-TSS (NM_001318240)	promoter-TSS (NM_001318240)	-521	NM_001318240	23054		NM_014071	ENSG00000198646	NCOA6	AIB3|ASC2|NRC|PRIP|RAP250|TRBP	nuclear receptor coactivator 6	protein-coding
157422	chr22	45159701	45160230	+	0	NA	intron (NR_038956, intron 1 of 2)	intron (NR_038956, intron 1 of 2)	3816	NR_038956	100506714		NR_038956	ENSG00000226328	NUP50-DT	NUP50-AS1	NUP50 divergent transcript	ncRNA
176502	chr4	94214621	94215550	+	0	NA	intron (NR_164732, intron 4 of 24)	intron (NR_164732, intron 4 of 24)	7001	NR_045644	56916		NM_020159	ENSG00000163104	SMARCAD1	ADERM|BASNS|ETL1|HEL1|HRZ|TYS	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding
118168	chr19	35029821	35031430	+	0	NA	promoter-TSS (NM_001321605)	promoter-TSS (NM_001321605)	155	NM_001037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
145596	chr20	44576421	44577000	+	0	NA	intron (NM_007066, intron 1 of 3)	intron (NM_007066, intron 1 of 3)	-5869	NM_001281445	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
36682	chr11	8680551	8680650	+	0	NA	Intergenic	Intergenic	-2192	NM_000990	6157		NM_000990	ENSG00000166441	RPL27A	L27A|uL15	ribosomal protein L27a	protein-coding
74294	chr15	57866221	57866630	+	0	NA	Intergenic	MER5C|DNA|hAT-Charlie	147598	NM_170697	8854		NM_003888	ENSG00000128918	ALDH1A2	DIH4|RALDH(II)|RALDH2|RALDH2-T	aldehyde dehydrogenase 1 family member A2	protein-coding
104922	chr17	81916351	81916650	+	0	NA	intron (NM_016538, intron 3 of 9)	AluSq4|SINE|Alu	1676	NM_016538	51547		NM_016538	ENSG00000187531	SIRT7	SIR2L7	sirtuin 7	protein-coding
99040	chr17	48882451	48882750	+	0	NA	intron (NR_135674, intron 2 of 3)	intron (NR_135674, intron 2 of 3)	-10187	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
167268	chr3	128612751	128613450	+	0	NA	Intergenic	Intergenic	-37014	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
47093	chr12	639001	640150	+	0	NA	intron (NR_122124, intron 3 of 4)	intron (NR_122124, intron 3 of 4)	4061	NM_001294346	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
26747	chr10	22699151	22699630	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	14718	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
16634	chr1	155112521	155112780	+	0	NA	Intergenic	AluY|SINE|Alu	-15226	NM_182685	1942		NM_004428	ENSG00000169242	EFNA1	B61|ECKLG|EFL1|EPLG1|GMAN|LERK-1|LERK1|TNFAIP4	ephrin A1	protein-coding
83301	chr16	24363801	24364000	+	0	NA	Intergenic	Intergenic	107565	NM_006539	10368		NM_006539	ENSG00000006116	CACNG3	-	calcium voltage-gated channel auxiliary subunit gamma 3	protein-coding
98504	chr17	47487101	47487300	+	0	NA	intron (NR_033934, intron 3 of 5)	AluSx|SINE|Alu	5420	NR_033934	653479		NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
42265	chr11	68210651	68211100	+	0	NA	intron (NR_161378, intron 1 of 9)	intron (NR_161378, intron 1 of 9)	2421	NM_001369426	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
215257	chr7	156948921	156950530	+	0	NA	promoter-TSS (NM_001353366)	promoter-TSS (NM_001353366)	13	NM_001353366	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
193827	chr6	31486121	31487330	+	0	NA	intron (NR_149132, intron 1 of 1)	MER5A|DNA|hAT-Charlie	8069	NR_149132	102725068		NR_149132	ENSG00000286940	MICB-DT	TCONS_00012692	MICB divergent transcript	ncRNA
83972	chr16	29248101	29248850	+	0	NA	Intergenic	Intergenic	-53812	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
51447	chr12	52043601	52043800	+	0	NA	intron (NM_001202233, intron 2 of 7)	intron (NM_001202233, intron 2 of 7)	5985	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
211770	chr7	107486001	107486250	+	0	NA	intron (NM_001379511, intron 6 of 20)	intron (NM_001379511, intron 6 of 20)	16068	NM_005295	2845		NM_005295	ENSG00000172209	GPR22	-	G protein-coupled receptor 22	protein-coding
125280	chr2	10478001	10478400	+	0	NA	Intergenic	Intergenic	28472	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
155575	chr22	38741451	38741950	+	0	NA	intron (NM_001199580, intron 10 of 18)	MIRb|SINE|MIR	13766	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
4318	chr1	20440651	20441000	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-12031	NR_033887	339505		NR_033887		LINC01141	-	long intergenic non-protein coding RNA 1141	ncRNA
195187	chr6	36038001	36038630	+	0	NA	intron (NM_139014, intron 1 of 10)	L2a|LINE|L2	10507	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
234224	chrX	12999351	12999880	+	0	NA	Intergenic	Intergenic	24505	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
42290	chr11	68339151	68339450	+	0	NA	intron (NM_002335, intron 1 of 22)	AluSx1|SINE|Alu	26709	NM_002335	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
64270	chr14	23308501	23309000	+	0	NA	intron (NM_001199864, intron 3 of 8)	intron (NM_001199864, intron 3 of 8)	1890	NM_001199839	599		NM_004050	ENSG00000129473	BCL2L2	BCL-W|BCL2-L-2|BCLW|PPP1R51	BCL2 like 2	protein-coding
2524	chr1	9711371	9712230	+	0	NA	intron (NM_001350234, intron 3 of 23)	intron (NM_001350234, intron 3 of 23)	20333	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
133941	chr2	130554221	130554880	+	0	NA	Intergenic	AluSx|SINE|Alu	-4635	NR_033930	646743		NR_033930	ENSG00000290610	PRSS40B	-	serine protease 40B (pseudogene)	pseudo
216548	chr8	21858051	21858830	+	0	NA	Intergenic	Intergenic	55250	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
177190	chr4	108172501	108173930	+	0	NA	intron (NR_029373, intron 1 of 2)	CpG	1095	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
114846	chr19	13841201	13841800	+	0	NA	non-coding (NR_036515, exon 1 of 1)	non-coding (NR_036515, exon 1 of 1)	1418	NR_036515	284454		NR_036515		MIR23AHG	Smyca	miR-23a/27a/24-2 cluster host gene	ncRNA
60809	chr13	45337501	45338830	+	0	NA	promoter-TSS (NR_002967)	promoter-TSS (NR_002967)	-556	NR_002967	677814		NR_002967	ENSG00000199477	SNORA31	ACA31|IIAE10|SNORA31A	small nucleolar RNA, H/ACA box 31	snoRNA
79706	chr16	1305821	1306550	+	0	NA	Intergenic	Intergenic	-2967	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
233191	chr9	137204051	137204350	+	0	NA	3' UTR (NM_053045, exon 1 of 1)	3' UTR (NM_053045, exon 1 of 1)	1448	NM_053045	94107		NM_053045	ENSG00000187713	TMEM203	HBEBP1	transmembrane protein 203	protein-coding
174404	chr4	39353221	39354430	+	0	NA	intron (NM_001204747, intron 1 of 24)	intron (NM_001204747, intron 1 of 24)	12537	NM_002913	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
235960	chrX	53435871	53436430	+	0	NA	Intergenic	L2a|LINE|L2	-1774	NM_001037811	3028		NM_004493	ENSG00000072506	HSD17B10	17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1	hydroxysteroid 17-beta dehydrogenase 10	protein-coding
62145	chr13	95834001	95834450	+	0	NA	intron (NM_020121, intron 37 of 38)	(TG)n|Simple_repeat|Simple_repeat	157086	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
89481	chr16	89114621	89116280	+	0	NA	intron (NM_174917, intron 6 of 10)	intron (NM_174917, intron 6 of 10)	-21098	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
17205	chr1	156258501	156259230	+	0	NA	intron (NM_001323614, intron 15 of 20)	intron (NM_001323614, intron 15 of 20)	-10748	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
69397	chr14	94045701	94046380	+	0	NA	3' UTR (NM_023112, exon 6 of 6)	3' UTR (NM_023112, exon 6 of 6)	19700	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
204029	chr7	1927901	1928100	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	12571	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
5703	chr1	26375151	26375880	+	0	NA	Intergenic	HERV4_I-int|LTR|ERV1	-2721	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
134027	chr2	131046071	131046850	+	0	NA	3' UTR (NM_001375901, exon 16 of 16)	3' UTR (NM_001375901, exon 16 of 16)	46702	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
39849	chr11	62374151	62374450	+	0	NA	intron (NM_001083926, intron 4 of 6)	intron (NM_001083926, intron 4 of 6)	36852	NM_001083926	80150		NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase and isoaspartyl peptidase 1	protein-coding
188112	chr5	150379151	150379650	+	0	NA	exon (NM_001135245, exon 15 of 26)	exon (NM_001135245, exon 15 of 26)	21703	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
224568	chr9	19473801	19474000	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	64891	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
24663	chr1	247079501	247080000	+	0	NA	promoter-TSS (NM_033213)	promoter-TSS (NM_033213)	-937	NR_037894	100533111		NR_037894	ENSG00000135747	ZNF670-ZNF695	-	ZNF670-ZNF695 readthrough (NMD candidate)	ncRNA
11030	chr1	84944731	84946180	+	0	NA	intron (NM_153259, intron 7 of 13)	intron (NM_153259, intron 7 of 13)	51658	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
202270	chr6	157034451	157034930	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-1737	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
23813	chr1	234400571	234401180	+	0	NA	intron (NM_005646, intron 25 of 29)	intron (NM_005646, intron 25 of 29)	27174	NM_001301733	388753		NM_001012985	ENSG00000168275	COA6	C1orf31|CEMCOX4|MC4DN13	cytochrome c oxidase assembly factor 6	protein-coding
126866	chr2	31998821	31999150	+	0	NA	intron (NR_163995, intron 1 of 7)	L2a|LINE|L2	11779	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
125334	chr2	10810051	10810980	+	0	NA	intron (NM_001282707, intron 1 of 13)	intron (NM_001282707, intron 1 of 13)	2270	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
196335	chr6	43169371	43169780	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1694	NM_003131	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
165110	chr3	71583301	71584880	+	0	NA	promoter-TSS (NM_032682)	promoter-TSS (NM_032682)	-112	NM_001244810	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
181182	chr5	39101751	39102250	+	0	NA	Intergenic	Intergenic	-27601	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
176706	chr4	101104551	101104850	+	0	NA	intron (NM_001130692, intron 3 of 11)	intron (NM_001130692, intron 3 of 11)	136172	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
8241	chr1	39760501	39760850	+	0	NA	intron (NM_001720, intron 6 of 6)	intron (NM_001720, intron 6 of 6)	10673	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
68088	chr14	75286151	75287080	+	0	NA	Intergenic	L2a|LINE|L2	7787	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
125001	chr2	9477901	9478330	+	0	NA	intron (NM_001320863, intron 2 of 5)	intron (NM_001320863, intron 2 of 5)	3060	NM_001320858	285148		NM_001039613	ENSG00000134330	IAH1	-	isoamyl acetate hydrolyzing esterase 1 (putative)	protein-coding
115054	chr19	14152071	14152230	+	0	NA	exon (NM_014921, exon 22 of 23)	exon (NM_014921, exon 22 of 23)	14998	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
82997	chr16	22183971	22184580	+	0	NA	intron (NM_001365288, intron 10 of 11)	intron (NM_001365288, intron 10 of 11)	21744	NM_001365288	100288072		NM_001365288	ENSG00000183921	SDR42E2	-	short chain dehydrogenase/reductase family 42E, member 2	protein-coding
145792	chr20	45394921	45395180	+	0	NA	intron (NR_003189, intron 3 of 5)	LTR2752|LTR|ERV1	-10943	NM_001197139	55861		NM_018478	ENSG00000244274	DBNDD2	C20orf35|CK1BP|HSMNP1	dysbindin domain containing 2	protein-coding
155462	chr22	38481351	38482400	+	0	NA	TTS (NM_016657)	TTS (NM_016657)	13779	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
66177	chr14	60652021	60652630	+	0	NA	Intergenic	Intergenic	-2848	NM_005982	6495		NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
213338	chr7	135474021	135474280	+	0	NA	intron (NM_013316, intron 1 of 10)	AluSg4|SINE|Alu	35952	NM_001190849	4850		NM_013316	ENSG00000080802	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex subunit 4	protein-coding
159459	chr3	14127821	14128680	+	0	NA	intron (NM_024334, intron 1 of 11)	intron (NM_024334, intron 1 of 11)	3198	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
63913	chr14	21940901	21941600	+	0	NA	Intergenic	Intergenic	-270233	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
21416	chr1	205300171	205300530	+	0	NA	Intergenic	AluSx3|SINE|Alu	21395	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
192693	chr6	26286301	26287350	+	0	NA	Intergenic	Intergenic	-1291	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
54254	chr12	84994421	84994680	+	0	NA	Intergenic	Tigger12|DNA|TcMar-Tigger	41727	NM_001100917	144448		NM_001100917	ENSG00000231738	TSPAN19	-	tetraspanin 19	protein-coding
187426	chr5	142015901	142017230	+	0	NA	Intergenic	Intergenic	-3538	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
204323	chr7	2714471	2714830	+	0	NA	3' UTR (NM_133463, exon 7 of 7)	3' UTR (NM_133463, exon 7 of 7)	26448	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
229805	chr9	125513651	125514150	+	0	NA	intron (NM_001006617, intron 7 of 11)	intron (NM_001006617, intron 7 of 11)	193308	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
191410	chr6	8983101	8983430	+	0	NA	Intergenic	Intergenic	331056	NR_004855	728655		NR_004855		HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA
134249	chr2	135112301	135112740	+	0	NA	intron (NM_001172435, intron 5 of 24)	intron (NM_001172435, intron 5 of 24)	-24108	NR_145723	109616967		NR_145723	ENSG00000208308	SNORA40B	-	small nucleolar RNA, H/ACA box 40B	snoRNA
204247	chr7	2558201	2559980	+	0	NA	5' UTR (NM_001287502, exon 1 of 19)	5' UTR (NM_001287502, exon 1 of 19)	111	NM_001287500	23288		NM_152558	ENSG00000106012	IQCE	1700028P05Rik|PAPA7	IQ motif containing E	protein-coding
168591	chr3	149097371	149098180	+	0	NA	intron (NR_046648, intron 1 of 2)	LTR12C|LTR|ERV1	-11221	NM_001318934	6596		NM_003071	ENSG00000071794	HLTF	HIP116|HIP116A|HLTF1|RNF80|SMARCA3|SNF2L3|ZBU1	helicase like transcription factor	protein-coding
175216	chr4	56817851	56819080	+	0	NA	intron (NM_001271721, intron 1 of 2)	AluSx3|SINE|Alu	3008	NR_073419	6691		NM_021114	ENSG00000128040	SPINK2	HUSI-II|SPGF29	serine peptidase inhibitor Kazal type 2	protein-coding
24009	chr1	235255821	235256700	+	0	NA	intron (NM_016374, intron 4 of 23)	Charlie1a|DNA|hAT-Charlie	-66144	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
157907	chr22	49767171	49767880	+	0	NA	Intergenic	L1M3f|LINE|L1	56806	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
96938	chr17	42174821	42175080	+	0	NA	intron (NM_012285, intron 6 of 16)	L2c|LINE|L2	6192	NM_012285	23415		NM_012285	ENSG00000089558	KCNH4	BEC2|ELK1|Kv12.3	potassium voltage-gated channel subfamily H member 4	protein-coding
232456	chr9	136150851	136151900	+	0	NA	Intergenic	Intergenic	32355	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
223058	chr8	143383271	143384200	+	0	NA	3' UTR (NM_052924, exon 15 of 15)	3' UTR (NM_052924, exon 15 of 15)	14859	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
174172	chr4	36284571	36284980	+	0	NA	intron (NR_165630, intron 2 of 10)	MLT1A0|LTR|ERVL-MaLR	3159	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
126898	chr2	32367071	32367430	+	0	NA	intron (NM_016252, intron 1 of 73)	AluSp|SINE|Alu	10034	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
216989	chr8	23103411	23104300	+	0	NA	TTS (NR_046173)	TTS (NR_046173)	934	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
10051	chr1	58649651	58649950	+	0	NA	Intergenic	Intergenic	50262	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
12699	chr1	109488771	109489350	+	0	NA	exon (NM_153340, exon 7 of 11)	exon (NM_153340, exon 7 of 11)	-4976	NM_001134402	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
224596	chr9	20361171	20361330	+	0	NA	intron (NM_001286691, intron 7 of 10)	intron (NM_001286691, intron 7 of 10)	49988	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
110871	chr19	2626551	2626880	+	0	NA	intron (NM_052847, intron 2 of 4)	MER20|DNA|hAT-Charlie	-4000	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
76186	chr15	73284101	73284300	+	0	NA	intron (NM_001172623, intron 23 of 27)	intron (NM_001172623, intron 23 of 27)	-15710	NR_162148	113219462		NR_162148		MIR12135	-	microRNA 12135	ncRNA
147528	chr20	59273921	59274180	+	0	NA	Intergenic	Intergenic	-26561	NM_207032	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
56716	chr12	120102601	120102800	+	0	NA	intron (NM_006861, intron 3 of 5)	intron (NM_006861, intron 3 of 5)	14053	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
43103	chr11	74960651	74960750	+	0	NA	intron (NM_014752, intron 1 of 4)	MIRb|SINE|MIR	11434	NM_014752	9789		NM_014752	ENSG00000118363	SPCS2	-	signal peptidase complex subunit 2	protein-coding
18297	chr1	161151701	161152100	+	0	NA	Intergenic	AluSx|SINE|Alu	-2078	NM_016406	51506		NM_016406	ENSG00000143222	UFC1	HSPC155|NEDSG	ubiquitin-fold modifier conjugating enzyme 1	protein-coding
130823	chr2	87065971	87066500	+	0	NA	intron (NR_026846, intron 1 of 10)	AluSz|SINE|Alu	10178	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
182878	chr5	69913171	69913650	+	0	NA	intron (NR_029426, intron 4 of 9).2	intron (NR_029426, intron 4 of 9).2	-9390	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
225310	chr9	34588271	34588530	+	0	NA	intron (NM_001207011, intron 1 of 9)	intron (NM_001207011, intron 1 of 9)	1324	NM_147164	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
96289	chr17	39930151	39930730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2839	NM_001320802	94103		NM_016471	ENSG00000172057	ORMDL3	-	ORMDL sphingolipid biosynthesis regulator 3	protein-coding
87730	chr16	75113221	75113480	+	0	NA	intron (NM_153486, intron 8 of 10)	intron (NM_153486, intron 8 of 10)	3422	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
202543	chr6	158638721	158639450	+	0	NA	intron (NM_001291602, intron 1 of 3)	intron (NM_001291602, intron 1 of 3)	5658	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
157657	chr22	46149151	46151930	+	0	NA	promoter-TSS (NM_001362873)	promoter-TSS (NM_001362873)	6	NM_001001928	5465		NM_005036	ENSG00000186951	PPARA	NR1C1|PPAR|PPAR-alpha|PPARalpha|hPPAR	peroxisome proliferator activated receptor alpha	protein-coding
65594	chr14	52147471	52147980	+	0	NA	Intergenic	L1PA11|LINE|L1	-78666	NM_007361	22795		NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
54432	chr12	91578971	91579200	+	0	NA	Intergenic	Intergenic	-396268	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
198480	chr6	106223251	106223730	+	0	NA	intron (NR_104402, intron 4 of 5)	intron (NR_104402, intron 4 of 5)	92776	NR_104402	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
105856	chr18	3057421	3057700	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-44416	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
16353	chr1	154328191	154329200	+	0	NA	promoter-TSS (NM_001367934)	promoter-TSS (NM_001367934)	-103	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
32529	chr10	102936471	102936630	+	0	NA	intron (NM_017649, intron 1 of 7)	intron (NM_017649, intron 1 of 7)	-18215	NR_160733	107984265		NR_160733	ENSG00000286575	LOC107984265	-	uncharacterized LOC107984265	ncRNA
22775	chr1	224414801	224415080	+	0	NA	intron (NM_001115113, intron 6 of 13)	AluJr|SINE|Alu	-16629	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
185775	chr5	132389751	132390250	+	0	NA	intron (NM_003060, intron 6 of 9)	intron (NM_003060, intron 6 of 9)	-20084	NR_110997	553103		NR_110997	ENSG00000233006	MIR3936HG	SLC22A5-AS1	MIR3936 host gene	ncRNA
167296	chr3	128670521	128671400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-20142	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
58565	chr12	132416101	132416300	+	0	NA	Intergenic	Intergenic	-73951	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
91412	chr17	4703621	4705030	+	0	NA	promoter-TSS (NR_103482)	promoter-TSS (NR_103482)	95	NR_103482	101559451		NR_103482	ENSG00000244184	PELP1-DT	-	PELP1 divergent transcript	ncRNA
22614	chr1	223405501	223405730	+	0	NA	Intergenic	L1MD|LINE|L1	12200	NM_152610	164127		NM_152610	ENSG00000178395	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
161487	chr3	42506501	42506830	+	0	NA	intron (NM_001251883, intron 1 of 9)	AluSx1|SINE|Alu	4022	NM_004624	7433		NM_004624	ENSG00000114812	VIPR1	HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R	vasoactive intestinal peptide receptor 1	protein-coding
192794	chr6	26570371	26570830	+	0	NA	intron (NR_134611, intron 1 of 1)	intron (NR_134611, intron 1 of 1)	1276	NR_134611	105374988		NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
37718	chr11	31037471	31037630	+	0	NA	intron (NM_001367979, intron 20 of 38)	AluY|SINE|Alu	-44864	NM_020869	341019		NM_020869	ENSG00000170959	DCDC1	DCDC5	doublecortin domain containing 1	protein-coding
183086	chr5	74055901	74056300	+	0	NA	Intergenic	Intergenic	242554	NM_001244364	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
219964	chr8	89737071	89737430	+	0	NA	intron (NR_125822, intron 1 of 4)	L1PB1|LINE|L1	20461	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
193545	chr6	30610001	30610680	+	0	NA	intron (NM_001376195, intron 2 of 19).6	intron (NM_001376195, intron 2 of 19).6	6903	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
71321	chr14	105396051	105396480	+	0	NA	3' UTR (NM_015197, exon 24 of 24)	3' UTR (NM_015197, exon 24 of 24)	-2273	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
20909	chr1	202171471	202172290	+	0	NA	intron (NR_002930, intron 6 of 21)	intron (NR_002930, intron 6 of 21)	3829	NR_002930	148713		NR_002930	ENSG00000293457	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase receptor type V, pseudogene	pseudo
75329	chr15	65323121	65323380	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	18573	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
14951	chr1	147688351	147689050	+	0	NA	Intergenic	(AAAACAA)n|Simple_repeat|Simple_repeat	-18176	NR_136635	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
139050	chr2	218687501	218687780	+	0	NA	intron (NM_015690, intron 11 of 26)	MIRb|SINE|MIR	15322	NM_001369423	27148		NM_015690	ENSG00000163482	STK36	CILD46|FU	serine/threonine kinase 36	protein-coding
58590	chr12	132462821	132463080	+	0	NA	Intergenic	Intergenic	-27201	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
203695	chr7	1033351	1034250	+	0	NA	intron (NM_032350, intron 2 of 4)	L1MC1|LINE|L1	-5368	NR_146965	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
116082	chr19	17245301	17247080	+	0	NA	promoter-TSS (NM_005234)	promoter-TSS (NM_005234)	-848	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
104044	chr17	80136921	80137800	+	0	NA	intron (NM_014740, intron 9 of 11)	intron (NM_014740, intron 9 of 11)	9768	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
229661	chr9	124346251	124346350	+	0	NA	intron (NM_001166169, intron 8 of 9)	intron (NM_001166169, intron 8 of 9)	-7173	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
168417	chr3	142435551	142435950	+	0	NA	intron (NM_019001, intron 1 of 41)	AluSz|SINE|Alu	12287	NM_019001	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
97961	chr17	45239071	45239800	+	0	NA	intron (NM_005892, intron 11 of 26)	intron (NM_005892, intron 11 of 26)	-8490	NR_024434	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
235648	chrX	48523471	48524050	+	0	NA	5' UTR (NM_006579, exon 2 of 5)	5' UTR (NM_006579, exon 2 of 5)	1952	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
145825	chr20	45790071	45790230	+	0	NA	intron (NM_080614, intron 1 of 6)	intron (NM_080614, intron 1 of 6)	1733	NM_080614	140686		NM_080614	ENSG00000124116	WFDC3	WAP14|dJ447F3.3	WAP four-disulfide core domain 3	protein-coding
69027	chr14	91793721	91793980	+	0	NA	intron (NM_001128595, intron 8 of 11).2	Tigger1|DNA|TcMar-Tigger	42605	NM_152332	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
2874	chr1	11456851	11457150	+	0	NA	Intergenic	L2c|LINE|L2	-22155	NM_020780	57540		NM_020780	ENSG00000204624	DISP3	PTCHD2	dispatched RND transporter family member 3	protein-coding
79223	chr16	367601	368380	+	0	NA	intron (NM_006428, intron 5 of 5)	intron (NM_006428, intron 5 of 5)	2548	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
118147	chr19	35002901	35003800	+	0	NA	intron (NM_001320034, intron 1 of 18)	intron (NM_001320034, intron 1 of 18)	3027	NM_001136199	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
139444	chr2	223779921	223780400	+	0	NA	intron (NM_001039569, intron 1 of 4)	intron (NM_001039569, intron 1 of 4)	57422	NM_001039569	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
197594	chr6	80165171	80165330	+	0	NA	intron (NM_000056, intron 3 of 10)	Charlie13a|DNA|hAT-Charlie	58579	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
153734	chr22	29306801	29307700	+	0	NA	intron (NM_152236, intron 1 of 5)	CpG	227	NM_006478	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
154254	chr22	31616171	31617250	+	0	NA	intron (NM_001007467, intron 29 of 32)	intron (NM_001007467, intron 29 of 32)	4821	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
81682	chr16	11202751	11202850	+	0	NA	Intergenic	Intergenic	53382	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
10826	chr1	77941201	77941600	+	0	NA	intron (NM_144573, intron 11 of 12)	intron (NM_144573, intron 11 of 12)	37672	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
104450	chr17	81097301	81098300	+	0	NA	intron (NM_001385159, intron 1 of 8)	intron (NM_001385159, intron 1 of 8)	189	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
22255	chr1	212626251	212626750	+	0	NA	exon (NM_153606, exon 1 of 1)	exon (NM_153606, exon 1 of 1)	2026	NM_153606	149647		NM_153606	ENSG00000162771	GARIN4	FAM71A|GARI-L4|GARIL4	golgi associated RAB2 interactor family member 4	protein-coding
39413	chr11	60854121	60854580	+	0	NA	intron (NM_004778, intron 1 of 1)	intron (NM_004778, intron 1 of 1)	1600	NM_004778	11251		NM_004778	ENSG00000183134	PTGDR2	CD294|CRTH2|DL1R|DP2|GPR44	prostaglandin D2 receptor 2	protein-coding
208478	chr7	67105151	67105450	+	0	NA	intron (NM_018264, intron 12 of 15)	L4_A_Mam|LINE|RTE-X	9097	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	ncRNA
201675	chr6	149514051	149514150	+	0	NA	intron (NM_139126, intron 11 of 12)	intron (NM_139126, intron 11 of 12)	-29086	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
141753	chr2	241924021	241924350	+	0	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	-21600	NM_001382369	285095		NM_001382368	ENSG00000216921	FAM240C	-	family with sequence similarity 240 member C	protein-coding
129235	chr2	68292201	68292400	+	0	NA	TTS (NM_015463)	TTS (NM_015463)	27649	NM_001371604	25927		NM_015463	ENSG00000119865	CNRIP1	C2orf32|CRIP-1|CRIP1	cannabinoid receptor interacting protein 1	protein-coding
128925	chr2	64487651	64488700	+	0	NA	intron (NR_147011, intron 1 of 2)	intron (NR_147011, intron 1 of 2)	1822	NR_147011	105374774		NR_147011	ENSG00000223863	LINC01805	-	long intergenic non-protein coding RNA 1805	ncRNA
75127	chr15	64568771	64569350	+	0	NA	intron (NM_015042, intron 2 of 9)	L2a|LINE|L2	108482	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
23449	chr1	228457021	228459650	+	0	NA	promoter-TSS (NM_033445).2	promoter-TSS (NM_033445).2	232	NM_175055	128312		NM_175055	ENSG00000196890	H2BC26	H2BU1|H2Bb|HIST3H2BB	H2B clustered histone 26	protein-coding
92603	chr17	9576481	9577380	+	0	NA	promoter-TSS (NR_033656)	promoter-TSS (NR_033656)	288	NM_001080556	146845		NM_145054	ENSG00000166596	CFAP52	HTX10|WDR16|WDRPUH	cilia and flagella associated protein 52	protein-coding
91635	chr17	5421651	5421950	+	0	NA	intron (NR_027685, intron 2 of 4)	AluSz|SINE|Alu	-2061	NM_001320653	4927		NM_002532	ENSG00000108559	NUP88	FADS4	nucleoporin 88	protein-coding
174068	chr4	26936321	26937100	+	0	NA	intron (NM_020860, intron 2 of 11)	intron (NM_020860, intron 2 of 11)	75869	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
162038	chr3	46697101	46697630	+	0	NA	intron (NM_001370524, intron 1 of 3)	MER21A|LTR|ERVL	3587	NM_001370524	259236		NM_147196	ENSG00000181585	TMIE	DFNB6	transmembrane inner ear	protein-coding
143185	chr20	24529851	24529950	+	0	NA	intron (NM_001323606, intron 2 of 4)	(GTG)n|Simple_repeat|Simple_repeat	59939	NR_147606	79953		NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
207644	chr7	45050921	45051230	+	0	NA	intron (NM_001363458, intron 2 of 10)	intron (NM_001363458, intron 2 of 10)	23441	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
53865	chr12	70241721	70242000	+	0	NA	TTS (NR_120459)	TTS (NR_120459)	-1170	NM_001199302	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
54615	chr12	92574321	92574780	+	0	NA	Intergenic	Intergenic	107871	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
74467	chr15	59788121	59788490	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-98985	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
114879	chr19	13881101	13881600	+	0	NA	TTS (NM_001345848)	TTS (NM_001345848)	4101	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
47323	chr12	1790271	1790430	+	0	NA	Intergenic	Intergenic	-29917	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
7905	chr1	37454671	37455230	+	0	NA	TTS (NR_038842)	TTS (NR_038842)	19493	NR_038842	728431		NR_038842	ENSG00000233621	LITATS1	LINC01137|ZC3H12A-DT	lncRNA induced by TGF-beta and antagonizes TGF-beta signaling 1	ncRNA
138775	chr2	216015751	216016700	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	-2674	NM_018000	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
54774	chr12	94152221	94152480	+	0	NA	intron (NM_005761, intron 1 of 30)	L2a|LINE|L2	3773	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
153633	chr22	28769101	28769500	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-3374	NM_001284263	150275		NM_173510	ENSG00000159873	CCDC117	dJ366L4.1	coiled-coil domain containing 117	protein-coding
186344	chr5	134755921	134756180	+	0	NA	Intergenic	AluSx|SINE|Alu	-2729	NR_125341	9879		NM_014829	ENSG00000145833	DDX46	PRPF5|Prp5	DEAD-box helicase 46	protein-coding
47475	chr12	3904801	3905280	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-31592	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
19645	chr1	180230651	180231230	+	0	NA	intron (NM_033343, intron 1 of 5)	CpG-2007	676	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
122403	chr19	49437271	49437630	+	0	NA	intron (NM_020309, intron 1 of 11)	intron (NM_020309, intron 1 of 11)	4077	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
169052	chr3	153173051	153173430	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	11014	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
141904	chr20	881401	881600	+	0	NA	intron (NM_001322809, intron 4 of 7)	L2b|LINE|L2	34834	NM_001322809	51378		NM_015985	ENSG00000101280	ANGPT4	ANG3|ANG4	angiopoietin 4	protein-coding
207743	chr7	48095221	48095530	+	0	NA	intron (NM_001287429, intron 3 of 5)	intron (NM_001287429, intron 3 of 5)	6110	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
53890	chr12	70609821	70610180	+	0	NA	promoter-TSS (NM_001206971)	promoter-TSS (NM_001206971)	24	NM_002837	5787		NM_002837	ENSG00000127329	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase receptor type B	protein-coding
6515	chr1	28531151	28531450	+	0	NA	intron (NM_001048194, intron 3 of 10)	AluSz|SINE|Alu	13074	NM_001048194	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
59218	chr13	23378001	23378700	+	0	NA	intron (NM_014363, intron 2 of 9)	intron (NM_014363, intron 2 of 9)	-2842	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
44653	chr11	110329721	110330180	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	-25164	NR_135100	105369486		NR_135100		LINC02732	-	long intergenic non-protein coding RNA 2732	ncRNA
170433	chr3	185898851	185899150	+	0	NA	Intergenic	L1MEc|LINE|L1	39014	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
206153	chr7	27899501	27900230	+	0	NA	intron (NM_175061, intron 2 of 4)	MIR3|SINE|MIR	159770	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
218997	chr8	63167651	63169650	+	0	NA	promoter-TSS (NM_001277818)	promoter-TSS (NM_001277818)	23	NM_001277817	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
142728	chr20	10036671	10036830	+	0	NA	intron (NM_022096, intron 2 of 10)	AluSx1|SINE|Alu	1763	NM_198798	63926		NM_022096	ENSG00000132623	ANKEF1	ANKRD5	ankyrin repeat and EF-hand domain containing 1	protein-coding
46085	chr11	122835971	122836200	+	0	NA	Intergenic	Intergenic	-2415	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
66379	chr14	61486051	61486500	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	83919	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
110377	chr19	1917671	1918300	+	0	NA	intron (NM_079834, intron 3 of 6)	intron (NM_079834, intron 3 of 6)	12586	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
130241	chr2	84838771	84839130	+	0	NA	intron (NM_001307978, intron 4 of 4)	intron (NM_001307978, intron 4 of 4)	42134	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
165363	chr3	91700751	91700850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2273096	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
141654	chr2	241760161	241761150	+	0	NA	intron (NM_001352824, intron 9 of 9)	MLT2D|LTR|ERVL	-16167	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
14248	chr1	143245371	143245780	+	0	NA	Intergenic	Intergenic	177017	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
157878	chr22	49704601	49705100	+	0	NA	Intergenic	Intergenic	-47331	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
32860	chr10	110072401	110073200	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-64419	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
15797	chr1	151279721	151280100	+	0	NA	TTS (NR_135595)	TTS (NR_135595)	-1612	NM_001304764	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
6817	chr1	30948421	30948680	+	0	NA	TTS (NR_004054).2	TTS (NR_004054).2	655	NR_004054	692234		NR_004054		SNORD103A	U103	small nucleolar RNA, C/D box 103A	snoRNA
34585	chr10	133247021	133247480	+	0	NA	TTS (NR_030170)	TTS (NR_030170)	370	NR_030170	574448		NR_030170	ENSG00000284219	MIR202	MIRN202|hsa-mir-202|mir-202	microRNA 202	ncRNA
182657	chr5	67204901	67205300	+	0	NA	Intergenic	Intergenic	-8301	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
71091	chr14	104871901	104873400	+	0	NA	intron (NM_001112726, intron 2 of 18)	intron (NM_001112726, intron 2 of 18)	7336	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
75099	chr15	64455821	64456280	+	0	NA	TTS (NM_001321924)	TTS (NM_001321924)	-4528	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
115440	chr19	15321301	15322330	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	10724	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
99611	chr17	50550101	50551130	+	0	NA	intron (NM_022827, intron 10 of 16)	intron (NM_022827, intron 10 of 16)	3441	NM_022827	64847		NM_022827	ENSG00000006282	SPATA20	HEL-S-98|SSP411|Tisp78	spermatogenesis associated 20	protein-coding
93804	chr17	20531621	20532800	+	0	NA	Intergenic	Intergenic	-27712	NR_029393	644945		NR_029393	ENSG00000291196	KRT16P3	KERSMCR	keratin 16 pseudogene 3	pseudo
107629	chr18	48943001	48943400	+	0	NA	promoter-TSS (NM_001190823)	promoter-TSS (NM_001190823)	-393	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
219132	chr8	66064171	66064330	+	0	NA	intron (NR_146171, intron 4 of 6)	intron (NR_146171, intron 4 of 6)	42697	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
237627	chrX	124015851	124016150	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	54294	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
109427	chr19	703451	704850	+	0	NA	Intergenic	CpG	-4785	NM_001040134	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
165069	chr3	71458951	71459450	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	82889	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
239429	chrY	56688571	56689230	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-265355	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
32401	chr10	102437921	102438180	+	0	NA	Intergenic	MIR|SINE|MIR	1538	NR_030169	574447		NR_030169	ENSG00000202569	MIR146B	MIRN146B|miRNA146B|mir-146b	microRNA 146b	ncRNA
225163	chr9	33819651	33819750	+	0	NA	intron (NM_017811, intron 1 of 4)	AluSx4|SINE|Alu	2540	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
32895	chr10	110162851	110163180	+	0	NA	Intergenic	Intergenic	-11035	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
20136	chr1	192557921	192558180	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-17723	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
9268	chr1	46301521	46302500	+	0	NA	intron (NM_006369, intron 1 of 9)	CpG	1606	NM_006369	10489		NM_006369	ENSG00000132128	LRRC41	MUF1|PP7759	leucine rich repeat containing 41	protein-coding
182907	chr5	70413701	70414100	+	0	NA	intron (NR_027386, intron 3 of 5).2	intron (NR_027386, intron 3 of 5).2	-1405	NM_001364570	2966		NM_001515	ENSG00000145736	GTF2H2	BTF2|BTF2 p44|BTF2P44|T-BTF2P44|TFIIH|p44	general transcription factor IIH subunit 2	protein-coding
211123	chr7	102526551	102527650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9323	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
231171	chr9	129895351	129895950	+	0	NA	3' UTR (NM_001363755, exon 16 of 16)	3' UTR (NM_001363755, exon 16 of 16)	26045	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
1629	chr1	3745621	3746280	+	0	NA	non-coding (NR_033708, exon 1 of 5)	non-coding (NR_033708, exon 1 of 5)	821	NR_033712	57212		NM_207306	ENSG00000293478	GFOD3P	KIAA0495|PDAM|TP73-AS1	Gfo/Idh/MocA-like oxidoreductase domain containing 3, pseudogene	pseudo
69199	chr14	92672301	92672500	+	0	NA	intron (NM_024832, intron 7 of 9)	AluSz|SINE|Alu	76227	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
152426	chr22	20580171	20580680	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	72378	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
200021	chr6	129626151	129626450	+	0	NA	intron (NM_033515, intron 5 of 14)	L1MC5|LINE|L1	83877	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
110520	chr19	2072101	2072300	+	0	NA	3' UTR (NM_130807, exon 5 of 5)	3' UTR (NM_130807, exon 5 of 5)	-20956	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
87828	chr16	75627051	75627350	+	0	NA	TTS (NM_005548)	TTS (NM_005548)	-3919	NM_001324448	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
193321	chr6	30141221	30141680	+	0	NA	intron (NM_138700, intron 1 of 4).8	L2b|LINE|L2	4717	NM_138700	135644		NM_138700	ENSG00000204614	TRIM40	RNF35	tripartite motif containing 40	protein-coding
192288	chr6	20532951	20533250	+	0	NA	Intergenic	(TCAT)n|Simple_repeat|Simple_repeat	-1357	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
80185	chr16	2127021	2128980	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-5119	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
173558	chr4	10092121	10092380	+	0	NA	intron (NM_005112, intron 2 of 11)	intron (NM_005112, intron 2 of 11)	-13558	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
145547	chr20	44199901	44200350	+	0	NA	intron (NM_016470, intron 3 of 3)	intron (NM_016470, intron 3 of 3)	10646	NM_016470	51526		NM_016470	ENSG00000132823	OSER1	C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1	oxidative stress responsive serine rich 1	protein-coding
179209	chr4	173485251	173485530	+	0	NA	intron (NM_001329597, intron 1 of 3)	MLT1H|LTR|ERVL-MaLR	33754	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
92069	chr17	7517421	7517800	+	0	NA	Intergenic	AluY|SINE|Alu	-31448	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
43078	chr11	74730951	74731730	+	0	NA	promoter-TSS (NM_015424)	promoter-TSS (NM_015424)	86	NM_001278473	25884		NM_015424	ENSG00000054938	CHRDL2	BNF1|CHL2	chordin like 2	protein-coding
213790	chr7	140881971	140882130	+	0	NA	intron (NM_001374244, intron 1 of 18)	Tigger1|DNA|TcMar-Tigger	42218	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
135112	chr2	157410001	157410400	+	0	NA	Intergenic	L1MEd|LINE|L1	-29691	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
44334	chr11	102412051	102412550	+	0	NA	intron (NM_052932, intron 2 of 4)	AluSx|SINE|Alu	40465	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
3331	chr1	15425701	15426730	+	0	NA	intron (NM_024329, intron 2 of 3)	intron (NM_024329, intron 2 of 3)	-12228	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
183534	chr5	79982051	79982350	+	0	NA	3' UTR (NM_001167741, exon 8 of 8)	3' UTR (NM_001167741, exon 8 of 8)	9062	NM_001363818	345778		NM_001010891	ENSG00000177034	MTX3	-	metaxin 3	protein-coding
140427	chr2	233115621	233116130	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	55533	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
55985	chr12	110280511	110282390	+	0	NA	5' UTR (NM_001681, exon 1 of 21)	5' UTR (NM_001681, exon 1 of 21)	203	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
64750	chr14	34553871	34555100	+	0	NA	Intergenic	L2a|LINE|L2	1904	NR_004421	6060		NR_004421	ENSG00000207389	RNU1-4	HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F	RNA, U1 small nuclear 4	snRNA
213461	chr7	138899271	138899430	+	0	NA	intron (NM_001164665, intron 8 of 19)	intron (NM_001164665, intron 8 of 19)	82039	NM_001164665	57670		NM_020910	ENSG00000122778	KIAA1549	RP86	KIAA1549	protein-coding
90132	chr16	90170951	90171250	+	0	NA	intron (NR_126161, intron 3 of 3)	intron (NR_126161, intron 3 of 3)	68836	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
146258	chr20	48923671	48923830	+	0	NA	intron (NM_006420, intron 1 of 38)	intron (NM_006420, intron 1 of 38)	2039	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
134276	chr2	135785101	135785530	+	0	NA	TTS (NM_014607)	TTS (NM_014607)	-34876	NR_045486	100507600		NR_045486	ENSG00000226806	LCT-AS1	-	LCT antisense RNA 1	ncRNA
28513	chr10	50336071	50336550	+	0	NA	intron (NM_147156, intron 7 of 10)	intron (NM_147156, intron 7 of 10)	-84794	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
87121	chr16	68776671	68777300	+	0	NA	intron (NM_004360, intron 2 of 15)	MIRb|SINE|MIR	39693	NM_001317185	999		NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
162974	chr3	49700201	49700400	+	0	NA	exon (NM_022064, exon 13 of 39)	exon (NM_022064, exon 13 of 39)	10743	NM_022064	63891		NM_022064	ENSG00000164068	RNF123	FP1477|KPC1	ring finger protein 123	protein-coding
94380	chr17	28938371	28938730	+	0	NA	intron (NM_020889, intron 2 of 8)	intron (NM_020889, intron 2 of 8)	12275	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
76208	chr15	73731851	73731950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	20470	NM_001303254	388135		NM_001039614	ENSG00000205363	INSYN1	C15orf59	inhibitory synaptic factor 1	protein-coding
174096	chr4	34382521	34382600	+	0	NA	Intergenic	(GGGTGG)n|Simple_repeat|Simple_repeat	-112813	NR_147184	105374394		NR_147183		LINC02484	-	long intergenic non-protein coding RNA 2484	ncRNA
212158	chr7	116859301	116859780	+	0	NA	Intergenic	Intergenic	-3047	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
227921	chr9	94182751	94182850	+	0	NA	intron (NR_160773, intron 2 of 2)	MamGypLTR2c|LTR|Gypsy	3966	NR_029481	406886		NR_029481	ENSG00000199133	MIRLET7D	LET7D|MIRNLET7D|hsa-let-7d|let-7d	microRNA let-7d	ncRNA
27982	chr10	42933601	42934650	+	0	NA	Intergenic	Intergenic	47382	NR_126352	104266963		NR_126352	ENSG00000229630	LINC01264	-	long intergenic non-protein coding RNA 1264	ncRNA
195135	chr6	35683001	35683980	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluSx3|SINE|Alu	5425	NM_001145776	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
166310	chr3	112670901	112671530	+	0	NA	Intergenic	Intergenic	-30072	NM_199511	151887		NM_178274	ENSG00000091986	CCDC80	CL2|DRO1|LINC01279|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
126134	chr2	26130801	26131050	+	0	NA	intron (NM_016131, intron 5 of 5)	intron (NM_016131, intron 5 of 5)	-42163	NM_001168241	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
80684	chr16	3038321	3039050	+	0	NA	non-coding (NR_047572, exon 8 of 8)	non-coding (NR_047572, exon 8 of 8)	-1741	NM_001369667	146439		NM_001103175	ENSG00000162069	BICDL2	BICDR-2|BICDR2|CCDC64B	BICD family like cargo adaptor 2	protein-coding
34482	chr10	132516701	132516900	+	0	NA	intron (NR_158224, intron 2 of 3)	intron (NR_158224, intron 2 of 3)	20123	NR_158224	107984282		NR_158224		LOC107984282	-	uncharacterized LOC107984282	ncRNA
26599	chr10	22244121	22244380	+	0	NA	Intergenic	Intergenic	-7822	NR_038921	100130992		NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
88392	chr16	84620121	84620380	+	0	NA	Intergenic	L1ME4b|LINE|L1	-2172	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
76161	chr15	72785421	72786080	+	0	NA	intron (NR_040107, intron 1 of 2)	intron (NR_040107, intron 1 of 2)	-1992	NM_001365225	83440		NM_031284	ENSG00000159322	ADPGK	2610017G09Rik|ADP-GK	ADP dependent glucokinase	protein-coding
108127	chr18	62346171	62346530	+	0	NA	intron (NM_001270950, intron 1 of 7)	intron (NM_001270950, intron 1 of 7)	21040	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
173770	chr4	17347471	17347700	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-26703	NR_145770	109616994		NR_145770	ENSG00000206780	SNORA75B	-	small nucleolar RNA, H/ACA box 75B	snoRNA
238129	chrX	136689171	136690100	+	0	NA	intron (NM_004840, intron 10 of 21)	intron (NM_004840, intron 10 of 21)	41477	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
217624	chr8	30046371	30046930	+	0	NA	Intergenic	Intergenic	36414	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
218432	chr8	47763651	47764300	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-25811	NM_005195	1052		NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT enhancer binding protein delta	protein-coding
20403	chr1	198184101	198184450	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	27277	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
141248	chr2	239721071	239721430	+	0	NA	Intergenic	Intergenic	-41610	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
214076	chr7	143406001	143406200	+	0	NA	intron (NM_005232, intron 2 of 17)	MER21B|LTR|ERVL	-1713	NR_033897	285965		NR_033897	ENSG00000229153	EPHA1-AS1	-	EPHA1 antisense RNA 1	ncRNA
61628	chr13	73759901	73760120	+	0	NA	intron (NM_007249, intron 6 of 7)	intron (NM_007249, intron 6 of 7)	195766	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
189741	chr5	176573751	176574550	+	0	NA	exon (NM_001171976, exon 7 of 32)	exon (NM_001171976, exon 7 of 32)	24808	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
52163	chr12	54288551	54289080	+	0	NA	Intergenic	AluSx3|SINE|Alu	6964	NM_006163	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
179584	chr4	185341021	185341480	+	0	NA	intron (NM_001378032, intron 12 of 19)	intron (NM_001378032, intron 12 of 19)	37748	NM_018409	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
75975	chr15	70507751	70508500	+	0	NA	Intergenic	MIRb|SINE|MIR	-2197	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
48364	chr12	9429401	9429600	+	0	NA	intron (NR_033399, intron 11 of 26)	intron (NR_033399, intron 11 of 26)	18672	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
76868	chr15	77944101	77944780	+	0	NA	non-coding (NR_157580, exon 1 of 5)	non-coding (NR_157580, exon 1 of 5)	121	NR_157580	440292		NR_157580		COMMD4P1	-	COMM domain containing 4 pseudogene 1	pseudo
150356	chr21	42187871	42189030	+	0	NA	Intergenic	Intergenic	-11239	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
149273	chr21	26816071	26816230	+	0	NA	Intergenic	Intergenic	29259	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
188057	chr5	149999701	150001200	+	0	NA	promoter-TSS (NM_014983)	promoter-TSS (NM_014983)	204	NM_001243253	81789		NM_030953	ENSG00000164296	TIGD6	-	tigger transposable element derived 6	protein-coding
184917	chr5	112919471	112920230	+	0	NA	intron (NM_005669, intron 2 of 4)	intron (NM_005669, intron 2 of 4)	2377	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
154648	chr22	36335751	36336750	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-49343	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
176569	chr4	98653821	98654080	+	0	NA	intron (NM_005723, intron 1 of 7)	MLT1G3|LTR|ERVL-MaLR	4661	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
229811	chr9	125629551	125629650	+	0	NA	intron (NM_024117, intron 4 of 10)	L1MB2|LINE|L1	77608	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
32200	chr10	101771371	101771630	+	0	NA	exon (NM_033163, exon 5 of 6)	exon (NM_033163, exon 5 of 6)	4614	NM_033164	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
27791	chr10	35463871	35464130	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	127126	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
196387	chr6	43271721	43272400	+	0	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	-26200	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
97986	chr17	45269801	45270300	+	0	NA	intron (NM_003954, intron 11 of 15)	MER21B|LTR|ERVL	-7956	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
201392	chr6	145809351	145809680	+	0	NA	intron (NM_001348092, intron 1 of 2)	intron (NM_001348092, intron 1 of 2)	5280	NM_032145	84085		NM_032145	ENSG00000118496	FBXO30	Fbx30	F-box protein 30	protein-coding
190168	chr5	178149751	178150480	+	0	NA	3' UTR (NM_022762, exon 11 of 11)	3' UTR (NM_022762, exon 11 of 11)	3770	NM_017838	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
92970	chr17	17113401	17114050	+	0	NA	intron (NM_015134, intron 3 of 22)	L1MB3|LINE|L1	71268	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
77831	chr15	88639801	88640850	+	0	NA	intron (NM_001303237, intron 2 of 3)	intron (NM_001303237, intron 2 of 3)	1309	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
93264	chr17	18033071	18033900	+	0	NA	intron (NM_145691, intron 1 of 7)	intron (NM_145691, intron 1 of 7)	5683	NM_145691	91647		NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|LP3663|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
229536	chr9	122848071	122848230	+	0	NA	3' UTR (NM_001354482, exon 20 of 20)	3' UTR (NM_001354482, exon 20 of 20)	-19562	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
6871	chr1	31183621	31184200	+	0	NA	exon (NM_024522, exon 4 of 7)	exon (NM_024522, exon 4 of 7)	55977	NM_024522	79570		NM_024522	ENSG00000084628	NKAIN1	FAM77C	sodium/potassium transporting ATPase interacting 1	protein-coding
40347	chr11	63950751	63951360	+	0	NA	intron (NM_024771, intron 3 of 7)	intron (NM_024771, intron 3 of 7)	11724	NM_001300800	79829		NM_024771	ENSG00000110583	NAA40	NAT11|NatD|PATT1|hNatD	N-alpha-acetyltransferase 40, NatD catalytic subunit	protein-coding
142357	chr20	3765701	3766480	+	0	NA	intron (NR_047675, intron 1 of 5)	intron (NR_047675, intron 1 of 5)	1663	NM_001258430	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
237771	chrX	129768451	129768850	+	0	NA	3' UTR (NM_003399, exon 21 of 21)	3' UTR (NM_003399, exon 21 of 21)	-11299	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
207258	chr7	43892171	43892730	+	0	NA	intron (NM_001077664, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	14146	NM_001204871	100534592		NM_001204871	ENSG00000270617	URGCP-MRPS24	-	URGCP-MRPS24 readthrough	protein-coding
176680	chr4	100566471	100566700	+	0	NA	Intergenic	L3|LINE|CR1	-48563	NM_016242	51705		NM_016242	ENSG00000164035	EMCN	EMCN2|MUC14	endomucin	protein-coding
16514	chr1	154928151	154928700	+	0	NA	intron (NM_006556, intron 3 of 4)	L2b|LINE|L2	8294	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
143269	chr20	25193751	25194130	+	0	NA	intron (NR_109994, intron 1 of 5)	L2a|LINE|L2	-1730	NM_001322394	955		NM_001247	ENSG00000197586	ENTPD6	CD39L2|IL-6SAG|IL6ST2|NTPDase-6|dJ738P15.3	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding
220622	chr8	100932051	100932430	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	18331	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
63419	chr13	114089851	114089950	+	0	NA	intron (NM_001320821, intron 1 of 25).2	L1MB5|LINE|L1	-11945	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
217723	chr8	30423201	30423550	+	0	NA	intron (NM_006867, intron 1 of 9)	intron (NM_006867, intron 1 of 9)	-37974	NR_046205	100128750		NR_046205	ENSG00000254109	RBPMS-AS1	TP53LC06	RBPMS antisense RNA 1	ncRNA
77138	chr15	79750551	79750650	+	0	NA	Intergenic	L1PA3|LINE|L1	146397	NR_037654	10588		NM_006441	ENSG00000136371	MTHFS	HsT19268|NEDMEHM	methenyltetrahydrofolate synthetase	protein-coding
100273	chr17	59621921	59622200	+	0	NA	intron (NM_004859, intron 1 of 31)	intron (NM_004859, intron 1 of 31)	2165	NM_004859	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
37003	chr11	11991371	11991880	+	0	NA	intron (NM_001018057, intron 3 of 6)	MSTB1|LTR|ERVL-MaLR	17014	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
182582	chr5	65967371	65967950	+	0	NA	intron (NM_001253697, intron 1 of 25)	Tigger3b|DNA|TcMar-Tigger	-22087	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
74784	chr15	63271301	63271500	+	0	NA	Intergenic	L2c|LINE|L2	-6150	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
117649	chr19	23800201	23801400	+	0	NA	intron (NR_149351, intron 2 of 4)	AluSp|SINE|Alu	37796	NR_149351	388524		NM_001005472	ENSG00000288920	RPSA2	37LRP|67LR|LBP/p40|LRP/LR|LamR|RPSAP58|RPSA_30_1642	ribosomal protein SA 2	protein-coding
37669	chr11	26284471	26285000	+	0	NA	TTS (NR_132968)	TTS (NR_132968)	3272	NR_132968	105376599		NR_132968		ANO3-AS1	-	ANO3 antisense RNA 1	ncRNA
54114	chr12	76347801	76349280	+	0	NA	promoter-TSS (NM_024685)	promoter-TSS (NM_024685)	-125	NM_024685	79738		NM_024685	ENSG00000179941	BBS10	C12orf58	Bardet-Biedl syndrome 10	protein-coding
155224	chr22	37904501	37904700	+	0	NA	Intergenic	Intergenic	-1697	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
105420	chr17	82861151	82861450	+	0	NA	intron (NM_005993, intron 13 of 38)	CpG	-21278	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
53205	chr12	62266871	62267030	+	0	NA	intron (NM_001351164, intron 1 of 21)	intron (NM_001351164, intron 1 of 21)	6546	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
152782	chr22	21813201	21813600	+	0	NA	intron (NM_138957, intron 1 of 7)	FLAM_A|SINE|Alu	54245	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
1303	chr1	2388621	2389430	+	0	NA	intron (NR_125361, intron 1 of 6)	AluSq2|SINE|Alu	2529	NR_125361	79906		NM_024848	ENSG00000116151	MORN1	-	MORN repeat containing 1	protein-coding
234575	chrX	19755621	19756480	+	0	NA	intron (NM_001353892, intron 2 of 17)	LTR2B|LTR|ERV1	43723	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
19144	chr1	171550551	171551050	+	0	NA	intron (NM_015172, intron 18 of 33)	L1PA6|LINE|L1	65270	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
181354	chr5	40484501	40484930	+	0	NA	Intergenic	Intergenic	-195200	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
85837	chr16	57006551	57006650	+	0	NA	intron (NR_169520, intron 1 of 47)	L1ME4b|LINE|L1	17043	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
48928	chr12	12704351	12705030	+	0	NA	Intergenic	Intergenic	-8507	NM_006143	2842		NM_006143	ENSG00000183150	GPR19	-	G protein-coupled receptor 19	protein-coding
144855	chr20	36894901	36895430	+	0	NA	TTS (NM_001304783)	TTS (NM_001304783)	19027	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
190196	chr5	178210771	178210930	+	0	NA	3' UTR (NM_004499, exon 7 of 7)	3' UTR (NM_004499, exon 7 of 7)	6317	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
209178	chr7	75374451	75374750	+	0	NA	Intergenic	Intergenic	15400	NR_040583	54441		NM_018991	ENSG00000290951	STAG3L1	STAG3L1P|STAG3L2|STAG3L3	STAG3 cohesin complex component like 1 (pseudogene)	pseudo
210041	chr7	94511871	94512030	+	0	NA	intron (NM_022900, intron 1 of 17)	intron (NM_022900, intron 1 of 17)	2141	NM_001363427	64921		NM_022900	ENSG00000127995	CASD1	C7orf12|Cas1|NBLA04196|SOAT	CAS1 domain containing 1	protein-coding
100540	chr17	62510251	62510600	+	0	NA	intron (NM_001375273, intron 3 of 21)	MIR|SINE|MIR	29312	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
78437	chr15	92810971	92811130	+	0	NA	Intergenic	Intergenic	15566	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
232820	chr9	136724201	136724430	+	0	NA	TTS (NR_003672)	TTS (NR_003672)	1922	NR_002975	677824		NR_002975	ENSG00000280496	SNORA17B	ACA43|SNORA43	small nucleolar RNA, H/ACA box 17B	snoRNA
2048	chr1	7808051	7808450	+	0	NA	intron (NM_001289863, intron 10 of 22)	AluSz|SINE|Alu	23821	NM_001289862	8863		NM_016831	ENSG00000049246	PER3	FASPS3|GIG13	period circadian regulator 3	protein-coding
68543	chr14	89305051	89305600	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	111908	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
125015	chr2	9557671	9558350	+	0	NA	Intergenic	AluSc|SINE|Alu	-2180	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
22534	chr1	222171051	222171150	+	0	NA	Intergenic	L1PA16|LINE|L1	-192580	NR_149057	105372950		NR_149057	ENSG00000238042	LINC02257	-	long intergenic non-protein coding RNA 2257	ncRNA
124413	chr19	58443721	58443980	+	0	NA	Intergenic	Intergenic	-3697	NM_003433	7691		NM_003433	ENSG00000131849	ZNF132	pHZ-12	zinc finger protein 132	protein-coding
196014	chr6	42016871	42017750	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	31584	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
201143	chr6	142906801	142908080	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	37736	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
119447	chr19	40407951	40408930	+	0	NA	intron (NM_020956, intron 1 of 5)	intron (NM_020956, intron 1 of 5)	4924	NM_020956	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
146644	chr20	50340101	50340300	+	0	NA	Intergenic	AluJb|SINE|Alu	-18858	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
187850	chr5	147712401	147713000	+	0	NA	intron (NM_014790, intron 1 of 20)	intron (NM_014790, intron 1 of 20)	70028	NM_001282282	9832		NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
171338	chr3	196041471	196041830	+	0	NA	Intergenic	L1MB7|LINE|L1	40440	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
138144	chr2	202313001	202313200	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	20049	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
178977	chr4	163153501	163153880	+	0	NA	intron (NM_138386, intron 2 of 7)	LTR12C|LTR|ERV1	13200	NM_001128931	92345		NM_138386	ENSG00000145414	NAF1	PFBMFT7	nuclear assembly factor 1 ribonucleoprotein	protein-coding
101993	chr17	74764001	74764880	+	0	NA	intron (NM_004252, intron 3 of 5)	intron (NM_004252, intron 3 of 5)	11905	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
234462	chrX	17739601	17740100	+	0	NA	intron (NM_001037536, intron 1 of 5)	AluSz|SINE|Alu	2357	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
130374	chr2	85298471	85299130	+	0	NA	intron (NM_031283, intron 4 of 11)	intron (NM_031283, intron 4 of 11)	29189	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
163529	chr3	51539431	51540250	+	0	NA	intron (NM_001322256, intron 1 of 21)	intron (NM_001322256, intron 1 of 21)	1121	NM_001322256	23132		NM_015106	ENSG00000164080	RAD54L2	ARIP4|HSPC325|SRISNF2L	RAD54 like 2	protein-coding
47572	chr12	4421551	4421730	+	0	NA	Intergenic	Intergenic	23974	NM_020996	2251		NM_020996	ENSG00000111241	FGF6	HBGF-6|HST2	fibroblast growth factor 6	protein-coding
238994	chrX	155997301	155998100	+	0	NA	promoter-TSS (NM_002186)	promoter-TSS (NM_002186)	4	NM_002186	3581		NM_002186	ENSG00000124334	IL9R	CD129|IL-9R	interleukin 9 receptor	protein-coding
144961	chr20	37184801	37185200	+	0	NA	intron (NM_001324306, intron 2 of 15)	intron (NM_001324306, intron 2 of 15)	-5452	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
226110	chr9	62869201	62869400	+	0	NA	non-coding (NR_122077, exon 2 of 3)	non-coding (NR_122077, exon 2 of 3)	-28076	NR_126047	728673		NR_126047	ENSG00000170161	FAM88B	-	family with sequence similarity 88 member B	ncRNA
33193	chr10	113666801	113667000	+	0	NA	Intergenic	Intergenic	-2830	NM_001261463	4892		NM_006175	ENSG00000197893	NRAP	N-RAP	nebulin related anchoring protein	protein-coding
126616	chr2	28796151	28796450	+	0	NA	intron (NM_206876, intron 8 of 8)	L1PA16|LINE|L1	-14534	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
3647	chr1	16397551	16398380	+	0	NA	TTS (NM_198546)	TTS (NM_198546)	30723	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
78955	chr15	101296321	101296580	+	0	NA	Intergenic	L1ME3|LINE|L1	-1202	NR_135508	6627		NM_003090	ENSG00000131876	SNRPA1	Lea1|U2A'	small nuclear ribonucleoprotein polypeptide A'	protein-coding
159541	chr3	14549421	14549780	+	0	NA	Intergenic	Intergenic	-9258	NM_001080423	80852		NM_001080423	ENSG00000144596	GRIP2	-	glutamate receptor interacting protein 2	protein-coding
41180	chr11	65627451	65628100	+	0	NA	intron (NM_032223, intron 22 of 34)	MIRb|SINE|MIR	-8535	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
239355	chrY	19566751	19568350	+	0	NA	intron (NR_045128, intron 1 of 9)	CpG	192	NR_045129	246126		NM_001005852	ENSG00000291033	TXLNGY	CYorf15A|CYorf15B|TXLNG2P	taxilin gamma Y-linked (pseudogene)	pseudo
149540	chr21	33027071	33028130	+	0	NA	exon (NM_005806, exon 2 of 2)	exon (NM_005806, exon 2 of 2)	1665	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
67882	chr14	74301751	74302500	+	0	NA	intron (NR_148466, intron 1 of 16)	L1ME5|LINE|L1	809	NM_020324	5826		NM_005050	ENSG00000119688	ABCD4	ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L	ATP binding cassette subfamily D member 4	protein-coding
146743	chr20	50801771	50801930	+	0	NA	intron (NM_198799, intron 1 of 4)	intron (NM_198799, intron 1 of 4)	6789	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
186271	chr5	134535451	134535800	+	0	NA	intron (NM_015288, intron 1 of 10)	intron (NM_015288, intron 1 of 10)	9517	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
85014	chr16	31535771	31535930	+	0	NA	Intergenic	L2|LINE|L2	7873	NM_001318222	51327		NM_016633	ENSG00000169877	AHSP	EDRF|ERAF	alpha hemoglobin stabilizing protein	protein-coding
154960	chr22	37265171	37265330	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-17258	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
168638	chr3	149969471	149970400	+	0	NA	intron (NM_053024, intron 1 of 2)	intron (NM_053024, intron 1 of 2)	960	NM_053024	5217		NM_002628	ENSG00000070087	PFN2	D3S1319E|PFL	profilin 2	protein-coding
91134	chr17	3723201	3724800	+	0	NA	promoter-TSS (NM_031965)	promoter-TSS (NM_031965)	97	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
161435	chr3	42013301	42014700	+	0	NA	Intergenic	CpG	-51897	NR_136342	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
147153	chr20	56415971	56416130	+	0	NA	intron (NM_001164114, intron 1 of 5)	intron (NM_001164114, intron 1 of 5)	3790	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
204874	chr7	5897221	5897800	+	0	NA	Intergenic	MER51E|LTR|ERV1	-1223	NM_015622	51622		NM_015622	ENSG00000122674	CCZ1	C7orf28A|CCZ1A|CGI-43|H_DJ1163J12.2	CCZ1 homolog, vacuolar protein trafficking and biogenesis associated	protein-coding
3708	chr1	16585301	16585850	+	0	NA	exon (NM_017940, exon 12 of 29)	exon (NM_017940, exon 12 of 29)	27989	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
59026	chr13	20301551	20301850	+	0	NA	Intergenic	CpG	-69305	NM_001110220	10804		NM_006783	ENSG00000121742	GJB6	CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2	gap junction protein beta 6	protein-coding
89466	chr16	89073901	89074280	+	0	NA	Intergenic	Intergenic	-19762	NR_147928	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
122291	chr19	49096801	49097150	+	0	NA	intron (NM_003089, intron 4 of 9)	AluSx|SINE|Alu	11524	NM_001301069	6625		NM_003089	ENSG00000104852	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein U1 subunit 70	protein-coding
108292	chr18	63316801	63317300	+	0	NA	TTS (NM_000657)	TTS (NM_000657)	2719	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
199180	chr6	111762051	111763130	+	0	NA	intron (NM_002037, intron 3 of 13)	MER4D0|LTR|ERV1	-2673	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
37178	chr11	14054871	14055030	+	0	NA	intron (NM_006108, intron 3 of 15)	intron (NM_006108, intron 3 of 15)	92227	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
129287	chr2	68447151	68447450	+	0	NA	Intergenic	Intergenic	19994	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
70607	chr14	102793501	102794100	+	0	NA	intron (NM_001199427, intron 1 of 7)	MLT1H1|LTR|ERVL-MaLR	16321	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
179036	chr4	165214521	165214780	+	0	NA	intron (NM_001161522, intron 1 of 13)	intron (NM_001161522, intron 1 of 13)	4631	NM_001161522	11275		NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
22115	chr1	211690051	211690380	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	14453	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
205353	chr7	13274171	13274350	+	0	NA	Intergenic	L1PA4|LINE|L1	586627	NM_005738	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
86049	chr16	57570501	57571100	+	0	NA	intron (NM_153837, intron 10 of 11)	intron (NM_153837, intron 10 of 11)	28157	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
166163	chr3	111608151	111608950	+	0	NA	intron (NR_134917, intron 8 of 14)	MIRc|SINE|MIR	-13204	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
230326	chr9	127976351	127977020	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	4304	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
114942	chr19	13979971	13980130	+	0	NA	intron (NM_002918, intron 6 of 20)	intron (NM_002918, intron 6 of 20)	26270	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
143137	chr20	23890701	23890900	+	0	NA	Intergenic	(CACCAT)n|Simple_repeat|Simple_repeat	-11052	NM_001900	1473		NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
226069	chr9	61866321	61866580	+	0	NA	TTS (NR_121606)	TTS (NR_121606)	2688	NR_121606	102723709		NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
106984	chr18	32026421	32027230	+	0	NA	intron (NM_017831, intron 1 of 5)	intron (NM_017831, intron 1 of 5)	8000	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
29577	chr10	71709151	71709250	+	0	NA	exon (NM_022124, exon 26 of 68)	exon (NM_022124, exon 26 of 68)	10578	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
140969	chr2	237943471	237943830	+	0	NA	Intergenic	MER52A|LTR|ERV1	-23295	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
43436	chr11	77705451	77706180	+	0	NA	intron (NM_016578, intron 5 of 15)	AluJr|SINE|Alu	-68009	NM_001311199	1207		NM_001293	ENSG00000074201	CLNS1A	CLCI|CLNS1B|ICln	chloride nucleotide-sensitive channel 1A	protein-coding
104826	chr17	81814971	81815130	+	0	NA	Intergenic	Intergenic	10900	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
54535	chr12	92130951	92131550	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	10463	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
31310	chr10	92674451	92675000	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-15230	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
236282	chrX	66046721	66047200	+	0	NA	Intergenic	Intergenic	-6835	NM_001184830	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
37871	chr11	33857901	33858180	+	0	NA	TTS (NM_001142316)	TTS (NM_001142316)	11838	NM_001142315	4005		NM_005574	ENSG00000135363	LMO2	LMO-2|RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
206528	chr7	34991821	34992600	+	0	NA	intron (NM_015283, intron 6 of 21)	intron (NM_015283, intron 6 of 21)	45275	NM_001366673	23333		NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like C-mannosyltransferase 1	protein-coding
185144	chr5	119315621	119316480	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	-17125	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
103973	chr17	79993071	79993230	+	0	NA	intron (NM_019020, intron 3 of 11)	MIR|SINE|MIR	-42297	NM_001271845	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
209062	chr7	74773751	74774880	+	0	NA	intron (NM_000265, intron 1 of 10)	intron (NM_000265, intron 1 of 10)	353	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
219250	chr8	67067771	67067930	+	0	NA	intron (NM_001382391, intron 1 of 30)	AluSx|SINE|Alu	3458	NM_001364869	79848		NM_024790	ENSG00000104218	CSPP1	CSPP|CSPP-L|JBTS21	centrosome and spindle pole associated protein 1	protein-coding
63843	chr14	21514401	21514830	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-3275	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
158159	chr22	50198001	50199080	+	0	NA	non-coding (NR_135275, exon 10 of 10)	non-coding (NR_135275, exon 10 of 10)	-2471	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
28354	chr10	47048471	47048730	+	0	NA	Intergenic	Intergenic	136878	NM_001042358	26095		NM_015605	ENSG00000204179	PTPN20	CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1	protein tyrosine phosphatase non-receptor type 20	protein-coding
35457	chr11	1461301	1461500	+	0	NA	non-coding (NR_046331, exon 21 of 21)	non-coding (NR_046331, exon 21 of 21)	19486	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
236913	chrX	87900351	87900850	+	0	NA	Intergenic	Intergenic	382798	NM_019117	56062		NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch like family member 4	protein-coding
169117	chr3	155838851	155839380	+	0	NA	intron (NM_001363883, intron 1 of 3)	AluSp|SINE|Alu	15291	NM_001363883	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
220400	chr8	100254171	100254330	+	0	NA	Intergenic	AluSq|SINE|Alu	47943	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
198093	chr6	90282701	90282900	+	0	NA	intron (NM_021813, intron 1 of 8)	L1PA13|LINE|L1	14043	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
157582	chr22	45984251	45984550	+	0	NA	Intergenic	L2a|LINE|L2	-7238	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
214049	chr7	143373951	143374350	+	0	NA	intron (NM_001371250, intron 1 of 6)	L2b|LINE|L2	6875	NR_161353	100507507		NR_161353		FAM131B-AS2	-	FAM131B antisense RNA 2	ncRNA
59851	chr13	30475371	30475530	+	0	NA	intron (NM_001370340, intron 1 of 4)	AluJb|SINE|Alu	-9473	NM_001363661	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
81338	chr16	4768321	4770280	+	0	NA	Intergenic	Intergenic	-2138	NM_001303450	26048		NM_021646	ENSG00000103199	ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
35935	chr11	2463321	2464000	+	0	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	2206	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
126962	chr2	36235751	36236250	+	0	NA	Intergenic	L1MA10|LINE|L1	119570	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
58462	chr12	132124801	132125250	+	0	NA	intron (NR_003290, intron 8 of 9)	intron (NR_003290, intron 8 of 9)	19294	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
91515	chr17	4953271	4953430	+	0	NA	intron (NM_053013, intron 5 of 11)	intron (NM_053013, intron 5 of 11)	2231	NM_001976	2027		NM_001976	ENSG00000108515	ENO3	GSD13|MSE	enolase 3	protein-coding
88022	chr16	81066771	81067330	+	0	NA	intron (NM_152337, intron 1 of 3)	intron (NM_152337, intron 1 of 3)	10188	NM_152337	123775		NM_152337	ENSG00000166455	C16orf46	-	chromosome 16 open reading frame 46	protein-coding
66717	chr14	64438421	64438800	+	0	NA	intron (NM_001364837, intron 16 of 26)	intron (NM_001364837, intron 16 of 26)	-26889	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
109969	chr19	1392971	1393530	+	0	NA	exon (NM_024407, exon 7 of 8)	exon (NM_024407, exon 7 of 8)	8292	NM_138924	2593		NM_000156	ENSG00000130005	GAMT	CCDS2|HEL-S-20|PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
59158	chr13	21580971	21581380	+	0	NA	intron (NM_152726, intron 1 of 11)	intron (NM_152726, intron 1 of 11)	22995	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
229084	chr9	114363221	114364880	+	0	NA	intron (NM_001317952, intron 6 of 20)	intron (NM_001317952, intron 6 of 20)	23932	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
6521	chr1	28554521	28554780	+	0	NA	intron (NM_017846, intron 2 of 8)	AluY|SINE|Alu	1565	NM_017846	54952		NM_017846	ENSG00000180098	TRNAU1AP	PRO1902|SECP43|TRSPAP1	tRNA selenocysteine 1 associated protein 1	protein-coding
214192	chr7	148507171	148507330	+	0	NA	Intergenic	L1M5|LINE|L1	-83516	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
128796	chr2	62312601	62312830	+	0	NA	Intergenic	AluJb|SINE|Alu	97194	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
56176	chr12	111424551	111425550	+	0	NA	intron (NM_005475, intron 2 of 7)	intron (NM_005475, intron 2 of 7)	-9812	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
26825	chr10	24519871	24520300	+	0	NA	intron (NM_019590, intron 10 of 20)	intron (NM_019590, intron 10 of 20)	53554	NM_001282770	56243		NM_019590	ENSG00000120549	KIAA1217	ETL4|SKT	KIAA1217	protein-coding
17865	chr1	159938121	159938780	+	0	NA	intron (NM_001135050, intron 3 of 20)	intron (NM_001135050, intron 3 of 20)	7163	NM_001135050	57549		NM_020789	ENSG00000085552	IGSF9	FP18798|IGSF9A|Nrt1	immunoglobulin superfamily member 9	protein-coding
84707	chr16	30844551	30845400	+	0	NA	intron (NM_001286526, intron 5 of 5)	LTR41B|LTR|ERVL	30348	NR_039744	100616231		NR_039744	ENSG00000265991	MIR4519	-	microRNA 4519	ncRNA
28633	chr10	59362971	59363130	+	0	NA	promoter-TSS (NM_001001971)	promoter-TSS (NM_001001971)	131	NM_001347842	220965		NM_198215	ENSG00000148541	FAM13C	FAM13C1	family with sequence similarity 13 member C	protein-coding
152850	chr22	22201071	22201450	+	0	NA	Intergenic	Intergenic	-43526	NM_001303509	7441		NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	V-set pre-B cell surrogate light chain 1	protein-coding
214227	chr7	148855651	148855750	+	0	NA	intron (NM_001203248, intron 1 of 19)	AluSg|SINE|Alu	27785	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
62644	chr13	101618501	101619100	+	0	NA	intron (NM_004791, intron 7 of 10)	intron (NM_004791, intron 7 of 10)	128848	NM_001271756	9358		NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
14576	chr1	145168651	145169380	+	0	NA	non-coding (NR_111954, exon 4 of 5)	non-coding (NR_111954, exon 4 of 5)	-1408	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
15549	chr1	150541801	150542580	+	0	NA	Intergenic	AluSq|SINE|Alu	-7218	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
214343	chr7	149475471	149475880	+	0	NA	intron (NM_001163474, intron 6 of 6)	intron (NM_001163474, intron 6 of 6)	-14613	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
11541	chr1	91011671	91012080	+	0	NA	intron (NM_032186, intron 1 of 3)	intron (NM_032186, intron 1 of 3)	9633	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
5189	chr1	24950421	24951080	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	14260	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
173123	chr4	6577001	6577400	+	0	NA	intron (NM_015274, intron 2 of 18)	intron (NM_015274, intron 2 of 18)	2011	NM_001292038	23324		NM_015274	ENSG00000013288	MAN2B2	EpMAN	mannosidase alpha class 2B member 2	protein-coding
105952	chr18	3771301	3771730	+	0	NA	intron (NM_001242763, intron 2 of 10)	CpG	73843	NM_001242765	9229		NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding
229317	chr9	120886901	120887300	+	0	NA	intron (NM_001286840, intron 1 of 14)	MLT2C1|LTR|ERVL	7796	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
196881	chr6	52180901	52181130	+	0	NA	Intergenic	Intergenic	-5360	NM_002190	3605		NM_002190	ENSG00000112115	IL17A	CTLA-8|CTLA8|IL-17|IL-17A|IL17|ILA17	interleukin 17A	protein-coding
198399	chr6	105793171	105793350	+	0	NA	Intergenic	Intergenic	-293076	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
94855	chr17	31504821	31505250	+	0	NA	intron (NM_001346748, intron 1 of 12)	L1MC5a|LINE|L1	16927	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
66925	chr14	65424101	65424300	+	0	NA	intron (NM_001371533, intron 1 of 10)	Tigger2|DNA|TcMar-Tigger	11470	NM_001371533	2530		NM_004480	ENSG00000033170	FUT8	CDGF|CDGF1	fucosyltransferase 8	protein-coding
212523	chr7	128830051	128832330	+	0	NA	intron (NM_001458, intron 1 of 47)	intron (NM_001458, intron 1 of 47)	784	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
89280	chr16	88688121	88688930	+	0	NA	Intergenic	Intergenic	-2018	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
17890	chr1	160085551	160086500	+	0	NA	intron (NM_004983, intron 2 of 2)	intron (NM_004983, intron 2 of 2)	4487	NM_004983	3765		NM_004983	ENSG00000162728	KCNJ9	GIRK3|KIR3.3	potassium inwardly rectifying channel subfamily J member 9	protein-coding
7643	chr1	35579071	35579630	+	0	NA	intron (NM_178548, intron 3 of 6)	AluSq2|SINE|Alu	6036	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
178808	chr4	153507851	153508150	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	41640	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
187782	chr5	146184651	146185580	+	0	NA	Intergenic	Intergenic	-2328	NM_016460	51520		NM_016460	ENSG00000133706	LARS1	HSPC192|ILFS1|LARS|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|cLRS|hr025Cl	leucyl-tRNA synthetase 1	protein-coding
123647	chr19	54708041	54708350	+	0	NA	non-coding (NR_003061, exon 1 of 7)	non-coding (NR_003061, exon 1 of 7)	279	NR_003061	79166		NM_024317	ENSG00000293273	LILRP2	CD85m|ILT10|LILRA5	leukocyte immunoglobulin-like receptor pseudogene 2	pseudo
235254	chrX	41688801	41689030	+	0	NA	promoter-TSS (NM_001097579)	promoter-TSS (NM_001097579)	-58	NM_005300	2857		NM_005300	ENSG00000171659	GPR34	LPS1|LYPSR1	G protein-coupled receptor 34	protein-coding
40149	chr11	62853201	62853980	+	0	NA	promoter-TSS (NR_000008)	promoter-TSS (NR_000008)	142	NR_002561	9299		NR_002561	ENSG00000277846	SNORD30	RNU30|U30	small nucleolar RNA, C/D box 30	snoRNA
172414	chr4	1807251	1807550	+	0	NA	non-coding (NR_148971, exon 19 of 19)	non-coding (NR_148971, exon 19 of 19)	14088	NM_001163213	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
175883	chr4	80062451	80062950	+	0	NA	intron (NM_001145794, intron 3 of 15)	intron (NM_001145794, intron 3 of 15)	10529	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
142851	chr20	17613551	17614380	+	0	NA	3' UTR (NM_001365613, exon 25 of 25)	3' UTR (NM_001365613, exon 25 of 25)	43890	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
136312	chr2	174969251	174969550	+	0	NA	intron (NR_038133, intron 1 of 11)	MER5A1|DNA|hAT-Charlie	35680	NM_001371514	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
25	chr1	40151	40650	+	0	NA	Intergenic	L2a|LINE|L2	-4319	NR_026818	645520		NR_026818	ENSG00000237613	FAM138A	F379|FAM138F	family with sequence similarity 138 member A	ncRNA
59396	chr13	25046951	25047330	+	0	NA	Intergenic	CpG	-48996	NM_030979	5042		NM_030979	ENSG00000151846	PABPC3	PABP3|PABPL3|tPABP	poly(A) binding protein cytoplasmic 3	protein-coding
203372	chr6	170457271	170457930	+	0	NA	Intergenic	Intergenic	95707	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
105602	chr18	659651	659950	+	0	NA	intron (NM_001354867, intron 2 of 5)	AluSx|SINE|Alu	-1509	NM_001012716	494514		NM_001012716		TYMSOS	C18orf56	TYMS opposite strand RNA	ncRNA
232571	chr9	136369701	136370150	+	0	NA	intron (NM_052813, intron 6 of 12)	intron (NM_052813, intron 6 of 12)	3744	NM_052814	64170		NM_022352	ENSG00000187796	CARD9	CANDF2|IMD103|hCARD9	caspase recruitment domain family member 9	protein-coding
128768	chr2	62211771	62211930	+	0	NA	intron (NM_006577, intron 1 of 1)	intron (NM_006577, intron 1 of 1)	-3671	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
226363	chr9	70043901	70044100	+	0	NA	non-coding (NR_125850, exon 1 of 14)	non-coding (NR_125850, exon 1 of 14)	152	NM_153267	256691		NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
190072	chr5	177669801	177670280	+	0	NA	intron (NR_026921, intron 1 of 5)	intron (NR_026921, intron 1 of 5)	2237	NR_026921	202181		NR_026921		SIMC1P1	-	SIMC1 pseudogene 1	pseudo
41833	chr11	67082421	67082780	+	0	NA	Intergenic	AluJr|SINE|Alu	25753	NM_014578	29984		NM_014578	ENSG00000173156	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
159325	chr3	13040221	13041080	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	32779	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
135057	chr2	156405751	156405850	+	0	NA	Intergenic	Intergenic	-29752	NM_001083112	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
205059	chr7	6601171	6601330	+	0	NA	intron (NM_001303039, intron 5 of 6)	intron (NM_001303039, intron 5 of 6)	11229	NM_001303039	79034		NM_024067	ENSG00000146576	INTS15	C7orf26	integrator complex subunit 15	protein-coding
16135	chr1	153663101	153663830	+	0	NA	intron (NM_004515, intron 10 of 13)	AluJr4|SINE|Alu	4762	NM_012437	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
171461	chr3	196351451	196351950	+	0	NA	3' UTR (NM_015562, exon 11 of 11)	3' UTR (NM_015562, exon 11 of 11)	-13280	NR_037950	100534611		NR_037950		TM4SF19-DYNLT2B	TM4SF19-TCTEX1D2	TM4SF19-DYNLT2B readthrough (NMD candidate)	ncRNA
25374	chr10	6472601	6472830	+	0	NA	intron (NM_001282644, intron 12 of 17)	AluSx1|SINE|Alu	107561	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
38477	chr11	45840801	45841250	+	0	NA	Intergenic	AluY|SINE|Alu	-6093	NM_001127457	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
124295	chr19	57855871	57856030	+	0	NA	intron (NM_001204817, intron 1 of 2)	intron (NM_001204817, intron 1 of 2)	6091	NM_001204817	84914		NM_017961	ENSG00000198466	ZNF587	ZF6	zinc finger protein 587	protein-coding
90414	chr17	1340121	1340380	+	0	NA	Intergenic	L1ME3|LINE|L1	59972	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
61446	chr13	51950701	51950980	+	0	NA	intron (NM_001330579, intron 7 of 18)	L2a|LINE|L2	60610	NM_000053	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
23943	chr1	235116851	235117350	+	0	NA	intron (NM_014765, intron 3 of 4)	AluYm1|SINE|Alu	10837	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
42805	chr11	72811401	72811600	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2911	NM_033388	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
64471	chr14	24267671	24268100	+	0	NA	exon (NM_004581, exon 12 of 16).2	exon (NM_004581, exon 12 of 16).2	3742	NM_004581	5875		NM_004581	ENSG00000100949	RABGGTA	PTAR3	Rab geranylgeranyltransferase subunit alpha	protein-coding
42491	chr11	70191421	70191900	+	0	NA	Intergenic	Intergenic	-11636	NM_003824	8772		NM_003824	ENSG00000168040	FADD	GIG3|IMD90|MORT1	Fas associated via death domain	protein-coding
10763	chr1	77217101	77217500	+	0	NA	intron (NM_005482, intron 1 of 10)	L2b|LINE|L2	2130	NM_005482	10026		NM_005482	ENSG00000142892	PIGK	GPI8|NEDHCAS	phosphatidylinositol glycan anchor biosynthesis class K	protein-coding
189412	chr5	172779171	172779330	+	0	NA	Intergenic	AluJr|SINE|Alu	-8055	NM_004417	1843		NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
142965	chr20	19903121	19903380	+	0	NA	intron (NM_001242581, intron 2 of 11)	MER90|LTR|ERV1	16729	NM_001242581	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
171790	chr4	472201	472400	+	0	NA	intron (NM_133474, intron 2 of 2)	AluSq2|SINE|Alu	1909	NR_002451	79963		NM_024903	ENSG00000293360	ABCA11P	ABCA11|EST1133530	ATP binding cassette subfamily A member 11, pseudogene	pseudo
39919	chr11	62523101	62523700	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	22264	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
49987	chr12	42208671	42208830	+	0	NA	intron (NM_001320080, intron 2 of 4)	intron (NM_001320080, intron 2 of 4)	29498	NM_005748	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
114024	chr19	10920451	10921150	+	0	NA	intron (NM_001370089, intron 12 of 14)	intron (NM_001370089, intron 12 of 14)	7839	NM_024029	78992		NM_024029	ENSG00000130733	YIPF2	FinGER2|YIPFbeta3B|Yip5C	Yip1 domain family member 2	protein-coding
217170	chr8	26299721	26299980	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	6634	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
211558	chr7	105538171	105538530	+	0	NA	intron (NR_144478, intron 3 of 13)	intron (NR_144478, intron 3 of 13)	6149	NM_021930	60561		NM_021930	ENSG00000135249	RINT1	ILFS3|RINT-1	RAD50 interactor 1	protein-coding
99531	chr17	50353271	50353430	+	0	NA	intron (NM_022167, intron 1 of 10)	intron (NM_022167, intron 1 of 10)	7224	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
60269	chr13	40607501	40607700	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	59041	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
117676	chr19	24090201	24090830	+	0	NA	intron (NM_001278678, intron 1 of 1)	AluSz|SINE|Alu	3328	NM_203282	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
164258	chr3	57463921	57464000	+	0	NA	intron (NM_001366028, intron 17 of 73)	L1M3f|LINE|L1	80384	NM_001366028	201625		NM_178504	ENSG00000174844	DNAH12	DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19	dynein axonemal heavy chain 12	protein-coding
147488	chr20	59153651	59154150	+	0	NA	intron (NM_001384354, intron 2 of 7)	L2c|LINE|L2	-9921	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
191074	chr6	3454771	3455830	+	0	NA	promoter-TSS (NR_147844)	promoter-TSS (NR_147844)	-403	NR_147844	643327		NR_147844		LOC643327	-	uncharacterized LOC643327	ncRNA
100718	chr17	63874171	63874600	+	0	NA	promoter-TSS (NM_020991)	promoter-TSS (NM_020991)	-656	NM_022644	1443		NM_020991	ENSG00000213218	CSH2	CS-2|CSB|GHB1|PL|hCS-B	chorionic somatomammotropin hormone 2	protein-coding
142300	chr20	3316621	3316980	+	0	NA	intron (NM_001009984, intron 17 of 36)	intron (NM_001009984, intron 17 of 36)	-77610	NR_135000	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
184610	chr5	103391851	103391950	+	0	NA	Intergenic	Intergenic	128006	NM_001377288	90355		NM_033211	ENSG00000181751	MACIR	C5orf30	macrophage immunometabolism regulator	protein-coding
14772	chr1	146041301	146042450	+	0	NA	Intergenic	AluYm1|SINE|Alu	10369	NR_104085	101954276		NR_104085	ENSG00000201558	RNVU1-6	RNU1-99|vU1.6	RNA, variant U1 small nuclear 6	snRNA
133143	chr2	112675101	112675500	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	29361	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
85638	chr16	55703171	55703530	+	0	NA	3' UTR (NM_001172502, exon 12 of 12)	3' UTR (NM_001172502, exon 12 of 12)	-21575	NR_033740	390732		NR_033740		CES1P2	-	carboxylesterase 1 pseudogene 2	pseudo
198520	chr6	106524921	106526280	+	0	NA	intron (NM_001371242, intron 6 of 21)	intron (NM_001371242, intron 6 of 21)	13745	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
79198	chr16	337621	338480	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	14673	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
165002	chr3	71364651	71365150	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-60129	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
163738	chr3	52334971	52335170	+	0	NA	intron (NM_015512, intron 8 of 77)	AluY|SINE|Alu	18751	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
176987	chr4	105140871	105141430	+	0	NA	Intergenic	Intergenic	-4725	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
29731	chr10	72101801	72102200	+	0	NA	intron (NM_001369110, intron 8 of 8)	L1PA14|LINE|L1	-12968	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
182264	chr5	57199351	57199450	+	0	NA	intron (NM_001331037, intron 2 of 12)	intron (NM_001331037, intron 2 of 12)	-14674	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
187586	chr5	142826621	142827430	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	41885	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
197045	chr6	53362771	53362930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-13671	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
7451	chr1	33051051	33051150	+	0	NA	Intergenic	CpG	-14189	NM_001319143	204		NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
188000	chr5	149538151	149538250	+	0	NA	intron (NM_001892, intron 2 of 9)	AluSp|SINE|Alu	12165	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
147615	chr20	62133621	62134830	+	0	NA	3' UTR (NM_144703, exon 9 of 9)	3' UTR (NM_144703, exon 9 of 9)	9169	NM_002792	5688		NM_002792	ENSG00000101182	PSMA7	C6|HEL-S-276|HSPC|RC6-1|XAPC7	proteasome 20S subunit alpha 7	protein-coding
152034	chr22	19473721	19473980	+	0	NA	intron (NM_005659, intron 3 of 11)	intron (NM_005659, intron 3 of 11)	5343	NM_005659	7353		NM_005659	ENSG00000070010	UFD1	UFD1L	ubiquitin recognition factor in ER associated degradation 1	protein-coding
45854	chr11	119440571	119441530	+	0	NA	intron (NR_034160, intron 2 of 3)	L1MB4|LINE|L1	-16065	NM_001311162	7070		NM_006288	ENSG00000154096	THY1	CD90|CDw90	Thy-1 cell surface antigen	protein-coding
8147	chr1	39395701	39396100	+	0	NA	intron (NM_012090, intron 52 of 92)	intron (NM_012090, intron 52 of 92)	-13173	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
152301	chr22	20322571	20323350	+	0	NA	Intergenic	LTR75|LTR|ERVL	-2900	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
65098	chr14	41605221	41605680	+	0	NA	Intergenic	Intergenic	-1406	NM_001346173	145581		NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
79405	chr16	672971	673130	+	0	NA	exon (NM_001352281, exon 18 of 19)	exon (NM_001352281, exon 18 of 19)	-2621	NM_001278721	9028		NM_003961	ENSG00000103269	RHBDL1	RHBDL|RRP	rhomboid like 1	protein-coding
79891	chr16	1556151	1556450	+	0	NA	TTS (NM_001256541)	TTS (NM_001256541)	22634	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
149718	chr21	34091551	34091980	+	0	NA	intron (NM_032476, intron 1 of 2)	intron (NM_032476, intron 1 of 2)	18187	NM_006933	6526		NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
16703	chr1	155226101	155227000	+	0	NA	intron (NR_002188, intron 1 of 12)	L2|LINE|L2	984	NR_002188	2630		NR_002188	ENSG00000291137	GBA1LP	Beta-GC|GBA|GBAP|GBAP1|GC|GLUC	glucosylceramidase beta 1 like, pseudogene	pseudo
119468	chr19	40435221	40435580	+	0	NA	Intergenic	L2a|LINE|L2	7198	NM_013368	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
80643	chr16	2994621	2994880	+	0	NA	TTS (NR_033861)	TTS (NR_033861)	-4205	NR_110948	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
21927	chr1	207852921	207853480	+	0	NA	Intergenic	Intergenic	-30497	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
193406	chr6	30439951	30440600	+	0	NA	Intergenic	L2|LINE|L2	-49234	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
66209	chr14	61295971	61296330	+	0	NA	Intergenic	Intergenic	-14812	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
33016	chr10	110672051	110672780	+	0	NA	intron (NM_001134363, intron 1 of 13)	CpG	28079	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
1910	chr1	6463051	6463150	+	0	NA	exon (NM_148965, exon 6 of 10)	exon (NM_148965, exon 6 of 10)	3073	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
230415	chr9	128123271	128123430	+	0	NA	intron (NM_001256335, intron 5 of 7)	AluSx|SINE|Alu	4379	NM_025072	80142		NM_025072	ENSG00000148334	PTGES2	C9orf15|GBF-1|GBF1|PGES2|mPGES-2	prostaglandin E synthase 2	protein-coding
209236	chr7	75762351	75762880	+	0	NA	Intergenic	Intergenic	9596	NM_001371938	10344		NM_006072	ENSG00000006606	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	C-C motif chemokine ligand 26	protein-coding
143028	chr20	21103901	21104100	+	0	NA	intron (NR_147212, intron 1 of 2)	intron (NR_147212, intron 1 of 2)	2358	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
181211	chr5	39164801	39165550	+	0	NA	intron (NM_199335, intron 2 of 17)	L1PB4|LINE|L1	54388	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
208926	chr7	74067601	74069400	+	0	NA	intron (NM_001278918, intron 27 of 27)	intron (NM_001278918, intron 27 of 27)	-15304	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
218842	chr8	59654801	59655000	+	0	NA	Intergenic	Tigger12|DNA|TcMar-Tigger	535690	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
221170	chr8	120123451	120124030	+	0	NA	Intergenic	CpG	-1362	NM_001384947	7373		NM_021110	ENSG00000187955	COL14A1	UND	collagen type XIV alpha 1 chain	protein-coding
227558	chr9	92132221	92133290	+	0	NA	promoter-TSS (NR_015444)	promoter-TSS (NR_015444)	-79	NR_015444	100128076		NR_015444		LOC100128076	-	protein tyrosine phosphatase receptor type H pseudogene	pseudo
121676	chr19	47505651	47506180	+	0	NA	intron (NR_038456, intron 1 of 11)	intron (NR_038456, intron 1 of 11)	9148	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
179262	chr4	176065551	176066230	+	0	NA	promoter-TSS (NM_001378103)	promoter-TSS (NM_001378103)	49	NM_001350727	116966		NM_170710	ENSG00000150627	WDR17	-	WD repeat domain 17	protein-coding
35610	chr11	1765651	1766600	+	0	NA	Intergenic	Intergenic	-2198	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
120573	chr19	44995401	44995680	+	0	NA	Intergenic	AluJr4|SINE|Alu	-5924	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
188281	chr5	151127471	151127630	+	0	NA	intron (NM_001193544, intron 12 of 24)	L2b|LINE|L2	14134	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
233993	chrX	2897721	2898380	+	0	NA	Intergenic	Intergenic	-6854	NR_144459	100506356		NR_144459	ENSG00000229851	ARSD-AS1	-	ARSD antisense RNA 1	ncRNA
230688	chr9	128728371	128728530	+	0	NA	intron (NR_046240, intron 1 of 1)	intron (NR_046240, intron 1 of 1)	3988	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
73385	chr15	42558101	42558900	+	0	NA	intron (NM_001323632, intron 2 of 4)	AluY|SINE|Alu	9662	NM_001130447	55142		NM_018097	ENSG00000137814	HAUS2	C15orf25|CEP27|HsT17025	HAUS augmin like complex subunit 2	protein-coding
161527	chr3	42606871	42607430	+	0	NA	intron (NM_001349126, intron 2 of 18)	MLT1J|LTR|ERVL-MaLR	-6072	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
84219	chr16	29960101	29960300	+	0	NA	Intergenic	AluSq|SINE|Alu	-1879	NR_161465	124446		NM_194280	ENSG00000149932	TMEM219	IGFBP-3R|IGFBP3R	transmembrane protein 219	protein-coding
46453	chr11	128180571	128180930	+	0	NA	Intergenic	Intergenic	-28016	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
21715	chr1	206757651	206758650	+	0	NA	Intergenic	L2b|LINE|L2	12453	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
92472	chr17	8740411	8741350	+	0	NA	intron (NM_144681, intron 4 of 6)	MIRb|SINE|MIR	3956	NM_144681	146849		NM_144681	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
119496	chr19	40468221	40468550	+	0	NA	intron (NM_020971, intron 1 of 35)	AluSz6|SINE|Alu	1384	NM_020971	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
159416	chr3	13496121	13496730	+	0	NA	intron (NM_001330636, intron 3 of 6)	intron (NM_001330636, intron 3 of 6)	16119	NM_001136041	79885		NM_024827	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
47256	chr12	1344351	1344450	+	0	NA	intron (NM_178039, intron 14 of 17)	intron (NM_178039, intron 14 of 17)	-156091	NR_028415	100292680		NR_028415	ENSG00000249628	LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
30080	chr10	73884921	73885450	+	0	NA	Intergenic	AluSc|SINE|Alu	-10594	NM_172171	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
102417	chr17	75629371	75629930	+	0	NA	intron (NM_004259, intron 15 of 19)	intron (NM_004259, intron 15 of 19)	-3784	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
167874	chr3	134755271	134755430	+	0	NA	Intergenic	Intergenic	-39910	NM_004441	2047		NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
232419	chr9	136089701	136090580	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	5149	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
98008	chr17	45316001	45318780	+	0	NA	promoter-TSS (NM_003954)	promoter-TSS (NM_003954)	-370	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
175259	chr4	66711951	66712150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	435226	NR_031673	100302177		NR_031673	ENSG00000221563	MIR1269A	MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a	microRNA 1269a	ncRNA
21674	chr1	206703501	206705450	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	19570	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
55580	chr12	106306371	106306530	+	0	NA	intron (NM_152772, intron 1 of 9)	L1MC4|LINE|L1	3717	NM_152772	255394		NM_152772	ENSG00000166046	TCP11L2	-	t-complex 11 like 2	protein-coding
190147	chr5	178111871	178112230	+	0	NA	Intergenic	L1MB5|LINE|L1	-1482	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
76667	chr15	75694251	75694850	+	0	NA	intron (NM_001897, intron 1 of 9)	intron (NM_001897, intron 1 of 9)	18298	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
120240	chr19	42389201	42390000	+	0	NA	intron (NM_032488, intron 1 of 3)	intron (NM_032488, intron 1 of 3)	697	NM_032488	84518		NM_032488	ENSG00000105427	CNFN	PLAC8L2	cornifelin	protein-coding
56415	chr12	113298151	113298450	+	0	NA	TTS (NM_024959)	TTS (NM_024959)	6777	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
61827	chr13	75766501	75766960	+	0	NA	intron (NM_001330583, intron 2 of 28)	intron (NM_001330583, intron 2 of 28)	6069	NM_015842	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
235817	chrX	49258021	49258580	+	0	NA	exon (NM_014009, exon 2 of 12)	exon (NM_014009, exon 2 of 12)	6410	NM_014009	50943		NM_014009	ENSG00000049768	FOXP3	AIID|DIETER|IPEX|JM2|PIDX|XPID	forkhead box P3	protein-coding
161845	chr3	45695821	45696550	+	0	NA	intron (NM_001319073, intron 2 of 20)	AluSc8|SINE|Alu	6789	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
105819	chr18	2965601	2966480	+	0	NA	intron (NM_001375808, intron 1 of 19)	AluJb|SINE|Alu	-19417	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
154667	chr22	36354721	36354980	+	0	NA	intron (NM_002473, intron 1 of 40)	L1ME4c|LINE|L1	33117	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
161370	chr3	40524321	40525380	+	0	NA	promoter-TSS (NM_198484)	promoter-TSS (NM_198484)	-28	NM_001287245	285268		NM_198484	ENSG00000172888	ZNF621	-	zinc finger protein 621	protein-coding
19728	chr1	181109751	181109850	+	0	NA	Intergenic	Intergenic	21100	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
79356	chr16	626151	626850	+	0	NA	intron (NM_001172664, intron 6 of 6)	intron (NM_001172664, intron 6 of 6)	-4485	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
22476	chr1	221715421	221716280	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	21050	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
1678	chr1	3930271	3930780	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-10087	NR_040065	728716		NR_040065		LINC01346	-	long intergenic non-protein coding RNA 1346	ncRNA
74743	chr15	63207001	63207600	+	0	NA	intron (NM_016530, intron 1 of 7)	L2a|LINE|L2	17694	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
157786	chr22	46765371	46765680	+	0	NA	intron (NR_104292, intron 1 of 13)	AluSx1|SINE|Alu	1783	NR_104292	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
34980	chr11	510071	510730	+	0	NA	Intergenic	AluSz|SINE|Alu	-3158	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
187807	chr5	146466701	146466900	+	0	NA	intron (NM_001040006, intron 5 of 20)	intron (NM_001040006, intron 5 of 20)	19467	NM_006706	10915		NM_006706	ENSG00000113649	TCERG1	CA150|TAF2S|Urn1	transcription elongation regulator 1	protein-coding
191938	chr6	15872801	15873000	+	0	NA	Intergenic	Intergenic	-209842	NM_001271669	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
19183	chr1	172118801	172119000	+	0	NA	intron (NR_146559, intron 14 of 20)	MamRep38|DNA|hAT	-19908	NR_036066	100422882		NR_036066	ENSG00000283152	MIR3120	mir-3120	microRNA 3120	ncRNA
198377	chr6	105482121	105482930	+	0	NA	Intergenic	Intergenic	-79443	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
141267	chr2	239952651	239953150	+	0	NA	intron (NR_136158, intron 7 of 10)	intron (NR_136158, intron 7 of 10)	-9806	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
27480	chr10	32052171	32052600	+	0	NA	intron (NM_004521, intron 1 of 25)	intron (NM_004521, intron 1 of 25)	4040	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
90889	chr17	2395371	2396000	+	0	NA	intron (NM_020310, intron 1 of 5)	intron (NM_020310, intron 1 of 5)	5375	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
76378	chr15	74608501	74609300	+	0	NA	intron (NM_003992, intron 1 of 12)	intron (NM_003992, intron 1 of 12)	528	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
48874	chr12	12467401	12468080	+	0	NA	3' UTR (NM_001300742, exon 4 of 4).2	3' UTR (NM_001300742, exon 4 of 4).2	95123	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
7185	chr1	32266501	32267950	+	0	NA	intron (NM_005356, intron 1 of 12)	intron (NM_005356, intron 1 of 12)	-6886	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
9391	chr1	47431521	47431780	+	0	NA	TTS (NR_026878)	TTS (NR_026878)	2991	NR_026878	84793		NM_032707	ENSG00000237424	FOXD2-AS1	-	FOXD2 adjacent opposite strand RNA 1	ncRNA
93497	chr17	18968321	18968580	+	0	NA	TTS (NM_001039999)	TTS (NM_001039999)	16285	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
99777	chr17	51119521	51121440	+	0	NA	exon (NM_003971, exon 1 of 29)	exon (NM_003971, exon 1 of 29)	388	NM_001130527	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
133392	chr2	118221671	118222300	+	0	NA	Intergenic	Intergenic	-35599	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
128592	chr2	60934301	60934700	+	0	NA	Intergenic	L1MA8|LINE|L1	52926	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
178670	chr4	152508401	152508980	+	0	NA	intron (NM_001349798, intron 2 of 13)	L1MC4a|LINE|L1	-19274	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
102591	chr17	75897901	75898300	+	0	NA	TTS (NM_032478)	TTS (NM_032478)	-1149	NM_173547	201292		NM_173547	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
83751	chr16	28690451	28690830	+	0	NA	intron (NM_001199142, intron 1 of 20)	AluSq2|SINE|Alu	2082	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
212090	chr7	115476771	115476950	+	0	NA	Intergenic	Intergenic	104581	NR_145801	109623459		NR_145801	ENSG00000202377	SNORA25B	-	small nucleolar RNA, H/ACA box 25B	snoRNA
68584	chr14	89444051	89444750	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	27046	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
26070	chr10	13074871	13075100	+	0	NA	intron (NM_001282658, intron 3 of 6)	intron (NM_001282658, intron 3 of 6)	25004	NM_001282658	83643		NM_031455	ENSG00000151468	CCDC3	-	coiled-coil domain containing 3	protein-coding
15287	chr1	149813201	149813900	+	0	NA	exon (NM_001123375, exon 1 of 1)	exon (NM_001123375, exon 1 of 1)	143	NM_001123375	653604		NM_001123375	ENSG00000183598	H3C13	H3C14|H3C15|HIST2H3D	H3 clustered histone 13	protein-coding
152978	chr22	23134871	23135400	+	0	NA	intron (NM_014433, intron 3 of 6)	AluJr|SINE|Alu	6855	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
119837	chr19	41368021	41368280	+	0	NA	intron (NM_001098825, intron 1 of 3)	AluJr|SINE|Alu	-4001	NM_030578	80776		NM_030578	ENSG00000123810	B9D2	ICIS-1|JBTS34|MKS10|MKSR-2|MKSR2	B9 domain containing 2	protein-coding
187301	chr5	141604021	141604700	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	14640	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
131372	chr2	96207201	96209550	+	0	NA	promoter-TSS (NR_046322)	promoter-TSS (NR_046322)	-41	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
198871	chr6	109447121	109447550	+	0	NA	intron (NM_022765, intron 16 of 24)	(CCCTG)n|Simple_repeat|Simple_repeat	-6164	NM_001111298	285755		NM_173672	ENSG00000185250	PPIL6	PPIase|RSPH12|bA425D10.6|dJ919F19.1	peptidylprolyl isomerase like 6	protein-coding
95153	chr17	35085271	35085800	+	0	NA	intron (NR_037713, intron 1 of 6)	AluSq|SINE|Alu	3691	NR_037713	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
109587	chr19	911671	914150	+	0	NA	intron (NM_138774, intron 1 of 7)	CpG	309	NM_138774	91300		NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
110480	chr19	2028601	2029200	+	0	NA	Intergenic	Intergenic	-13186	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
121649	chr19	47483351	47484650	+	0	NA	promoter-TSS (NR_038452)	promoter-TSS (NR_038452)	219	NR_111923	11133		NM_007059	ENSG00000118162	KPTN	2E4|KICS4|MRT41	kaptin, actin binding protein	protein-coding
152586	chr22	21166101	21166650	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-1490	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
157264	chr22	43923271	43924580	+	0	NA	exon (NM_025225, exon 1 of 9)	exon (NM_025225, exon 1 of 9)	120	NM_025225	80339		NM_025225	ENSG00000100344	PNPLA3	ADPN|C22orf20|iPLA(2)epsilon	patatin like phospholipase domain containing 3	protein-coding
64300	chr14	23559451	23560600	+	0	NA	TTS (NM_001126339)	TTS (NM_001126339)	-1072	NR_110555	102724814		NR_110555	ENSG00000258727	AP1G2-AS1	-	AP1G2 antisense RNA 1	ncRNA
107460	chr18	46658151	46658580	+	0	NA	Intergenic	Intergenic	-1145	NM_144612	125336		NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology PLAT domains 1	protein-coding
187034	chr5	139797001	139797200	+	0	NA	intron (NM_032289, intron 1 of 14)	intron (NM_032289, intron 1 of 14)	1292	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
154305	chr22	31949301	31949880	+	0	NA	intron (NM_003405, intron 1 of 1)	AluYa5|SINE|Alu	-4228	NM_015372	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
82567	chr16	18762721	18762980	+	0	NA	Intergenic	Intergenic	27484	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
206865	chr7	37453601	37453800	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-4374	NM_001206480	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
178124	chr4	141705901	141706200	+	0	NA	intron (NM_172175, intron 3 of 9)	L1MA6|LINE|L1	69467	NR_037840	3600		NM_000585	ENSG00000164136	IL15	IL-15	interleukin 15	protein-coding
226228	chr9	66154051	66154450	+	0	NA	Intergenic	CpG	10656	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
139166	chr2	219179771	219180650	+	0	NA	exon (NM_024293, exon 4 of 9)	exon (NM_024293, exon 4 of 9)	1501	NM_001321110	79137		NM_024293	ENSG00000144567	RETREG2	C2orf17|FAM134A|MAG-2	reticulophagy regulator family member 2	protein-coding
99257	chr17	49719471	49719830	+	0	NA	intron (NM_030802, intron 5 of 7)	intron (NM_030802, intron 5 of 7)	-11686	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
107791	chr18	51151171	51151800	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	46196	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
220457	chr8	100411171	100412030	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	28837	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
83271	chr16	24009201	24009650	+	0	NA	intron (NM_212535, intron 3 of 16)	L1M3|LINE|L1	173442	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
119331	chr19	39949401	39949600	+	0	NA	Intergenic	PRIMA41-int|LTR|ERV1	-14874	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
129051	chr2	65063321	65063800	+	0	NA	intron (NM_015147, intron 1 of 6)	intron (NM_015147, intron 1 of 6)	7144	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
119004	chr19	38894501	38894900	+	0	NA	promoter-TSS (NR_034146)	promoter-TSS (NR_034146)	-545	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
230293	chr9	127945251	127945430	+	0	NA	intron (NM_203305, intron 5 of 7)	intron (NM_203305, intron 5 of 7)	5374	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
177058	chr4	108031351	108031650	+	0	NA	intron (NM_001331027, intron 6 of 7)	L2c|LINE|L2	26836	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
25864	chr10	11246151	11246630	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	81360	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
53929	chr12	71751971	71752330	+	0	NA	Intergenic	AluJr|SINE|Alu	-2713	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
128747	chr2	62054051	62054350	+	0	NA	intron (NM_001371765, intron 2 of 2)	L1PB4|LINE|L1	-141915	NM_006577	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
206951	chr7	38249721	38249980	+	0	NA	Intergenic	Intergenic	23797	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
140587	chr2	233370871	233371030	+	0	NA	intron (NM_152879, intron 1 of 29)	AluJo|SINE|Alu	16456	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
163390	chr3	50501021	50501680	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	2284	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
42780	chr11	72759121	72759530	+	0	NA	exon (NM_006645, exon 3 of 7)	exon (NM_006645, exon 3 of 7)	-6936	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
6260	chr1	27571321	27572150	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	31759	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
57907	chr12	123461301	123461780	+	0	NA	intron (NM_180699, intron 1 of 1)	intron (NM_180699, intron 1 of 1)	1836	NM_180699	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
219207	chr8	66662651	66663150	+	0	NA	intron (NM_025054, intron 1 of 2)	AluSc|SINE|Alu	4331	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
56632	chr12	118355871	118356030	+	0	NA	intron (NM_001346487, intron 1 of 20)	intron (NM_001346487, intron 1 of 20)	3755	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
180352	chr5	6729321	6730200	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	16328	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
108038	chr18	59139171	59140450	+	0	NA	promoter-TSS (NM_001307941)	promoter-TSS (NM_001307941)	-74	NM_001307941	90701		NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
43574	chr11	83068871	83069230	+	0	NA	intron (NM_014488, intron 1 of 5)	intron (NM_014488, intron 1 of 5)	2412	NM_001286061	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
47776	chr12	6557101	6557300	+	0	NA	exon (NM_001033714, exon 16 of 16)	exon (NM_001033714, exon 16 of 16)	-1158	NM_001330324	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
123668	chr19	54905751	54906300	+	0	NA	promoter-TSS (NM_001145458)	promoter-TSS (NM_001145458)	-123	NM_001242357	9437		NM_004829	ENSG00000189430	NCR1	CD335|LY94|NK-p46|NKP46	natural cytotoxicity triggering receptor 1	protein-coding
235311	chrX	42869801	42870000	+	0	NA	Intergenic	Intergenic	-91737	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
92734	chr17	14304851	14305450	+	0	NA	non-coding (NR_026880, exon 1 of 1)	non-coding (NR_026880, exon 1 of 1)	1410	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
206601	chr7	35804871	35805200	+	0	NA	intron (NM_001788, intron 1 of 12)	AluSq2|SINE|Alu	3816	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
17375	chr1	156581401	156582220	+	0	NA	exon (NM_001105669, exon 2 of 11)	exon (NM_001105669, exon 2 of 11)	2087	NM_001105669	164118		NM_001105669	ENSG00000187862	TTC24	-	tetratricopeptide repeat domain 24	protein-coding
65328	chr14	50118051	50118880	+	0	NA	exon (NM_006939, exon 23 of 23)	exon (NM_006939, exon 23 of 23)	-1893	NR_049739	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
236564	chrX	72298001	72298250	+	0	NA	Intergenic	L2b|LINE|L2	7789	NM_001144887	4435		NM_004143	ENSG00000125931	CITED1	MSG1	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1	protein-coding
17423	chr1	156656021	156656330	+	0	NA	intron (NM_021948, intron 8 of 13)	intron (NM_021948, intron 8 of 13)	14058	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
16226	chr1	153932201	153934030	+	0	NA	intron (NM_014856, intron 21 of 27)	(GCCCCT)n|Simple_repeat|Simple_repeat	-10143	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
29120	chr10	68350651	68350950	+	0	NA	intron (NM_001330103, intron 16 of 17)	AluSp|SINE|Alu	-17872	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
63884	chr14	21826071	21826430	+	0	NA	Intergenic	Intergenic	-155233	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
108974	chr18	79619471	79620030	+	0	NA	Intergenic	Intergenic	40468	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
27266	chr10	29998251	29998670	+	0	NA	Intergenic	Intergenic	61126	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
200394	chr6	134333621	134333880	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-15692	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
26463	chr10	17513151	17513250	+	0	NA	Intergenic	Intergenic	-58605	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
58960	chr13	19836521	19836780	+	0	NA	TTS (NM_001039650)	TTS (NM_001039650)	26986	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
231973	chr9	133179921	133180350	+	0	NA	Intergenic	Intergenic	-16221	NM_021996	26301		NM_021996	ENSG00000148288	GBGT1	A3GALNT|FS|UNQ2513	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)	protein-coding
223190	chr8	143566871	143567550	+	0	NA	3' UTR (NM_001100878, exon 14 of 14).2	3' UTR (NM_001100878, exon 14 of 14).2	5562	NM_001100878	642475		NM_001100878	ENSG00000204839	MROH6	C8orf73	maestro heat like repeat family member 6	protein-coding
211921	chr7	112454871	112455030	+	0	NA	intron (NM_001197079, intron 1 of 11)	AluSz|SINE|Alu	2892	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
70808	chr14	103546521	103547480	+	0	NA	Intergenic	Intergenic	15320	NM_001015049	9529		NM_004873	ENSG00000166170	BAG5	BAG-5|CMD2F	BAG cochaperone 5	protein-coding
97591	chr17	44108901	44109380	+	0	NA	intron (NM_001382393, intron 3 of 26)	intron (NM_001382393, intron 3 of 26)	-6772	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
123696	chr19	55018971	55019330	+	0	NA	intron (NM_001256017, intron 4 of 6).2	AluSc8|SINE|Alu	19114	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
23984	chr1	235215451	235215830	+	0	NA	intron (NM_016374, intron 16 of 23)	AluJo|SINE|Alu	-25524	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
225961	chr9	41113421	41114080	+	0	NA	intron (NR_147036, intron 2 of 6)	SATR1|Satellite|Satellite	-4820	NR_147037	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
135000	chr2	152742771	152743250	+	0	NA	intron (NM_001371972, intron 3 of 3)	intron (NM_001371972, intron 3 of 3)	24061	NM_001350068	151188		NM_152522	ENSG00000177917	ARL6IP6	AIP-6|AIP6|PFAAP1	ADP ribosylation factor like GTPase 6 interacting protein 6	protein-coding
51763	chr12	53299101	53300550	+	0	NA	TTS (NM_002624)	TTS (NM_002624)	130	NM_021640	60314		NM_021640	ENSG00000139637	MYG1	C12orf10|Gamm1|MST024|MSTP024|MYG	MYG1 exonuclease	protein-coding
7866	chr1	36383521	36383850	+	0	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	2239	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
112672	chr19	7010721	7010980	+	0	NA	Intergenic	Intergenic	-4435	NR_024372	497049		NM_001011541		MARK2P21	-	MARK2 pseudogene 21	pseudo
141139	chr2	239212621	239213080	+	0	NA	intron (NM_006037, intron 3 of 26)	intron (NM_006037, intron 3 of 26)	-17393	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
36338	chr11	3894021	3894580	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	38238	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
91840	chr17	7203651	7203750	+	0	NA	exon (NM_001321077, exon 4 of 19)	exon (NM_001321077, exon 4 of 19)	1487	NM_001321077	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
58995	chr13	20064251	20064350	+	0	NA	intron (NM_001353161, intron 20 of 26)	intron (NM_001353161, intron 20 of 26)	-38401	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
238272	chrX	149436251	149436350	+	0	NA	Intergenic	L1PA3|LINE|L1	69006	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
221624	chr8	125702221	125702880	+	0	NA	Intergenic	Intergenic	248647	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
134894	chr2	149040501	149040700	+	0	NA	intron (NM_001317006, intron 1 of 4)	intron (NM_001317006, intron 1 of 4)	1901	NM_177964	130576		NM_177964	ENSG00000150556	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
70101	chr14	100221251	100222550	+	0	NA	Intergenic	L2c|LINE|L2	-17244	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
222758	chr8	141431201	141432480	+	0	NA	3' UTR (NM_007079, exon 4 of 4)	3' UTR (NM_007079, exon 4 of 4)	10452	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
140806	chr2	236359421	236359780	+	0	NA	intron (NM_001270585, intron 15 of 18)	intron (NM_001270585, intron 15 of 18)	-95255	NM_212556	401036		NM_212556	ENSG00000182177	ASB18	ASB-18	ankyrin repeat and SOCS box containing 18	protein-coding
215664	chr8	663471	664070	+	0	NA	TTS (NR_156467)	TTS (NR_156467)	67454	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
236105	chrX	56994421	56994680	+	0	NA	exon (NM_001010862, exon 2 of 2)	exon (NM_001010862, exon 2 of 2)	991	NM_001010862	169981		NM_001010862	ENSG00000204271	SPIN3	SPIN-3|TDRD27|bA445O16.1	spindlin family member 3	protein-coding
37361	chr11	15113371	15113650	+	0	NA	intron (NM_001031853, intron 1 of 12)	intron (NM_001031853, intron 1 of 12)	1086	NM_001031853	387755		NM_001031853	ENSG00000188487	INSC	-	INSC spindle orientation adaptor protein	protein-coding
155409	chr22	38393251	38393350	+	0	NA	intron (NR_002821, intron 1 of 4)	intron (NR_002821, intron 1 of 4)	5615	NM_001289912	102800317		NM_001289912	ENSG00000283900	TPTEP2-CSNK1E	LOC400927-CSNK1E	TPTEP2-CSNK1E readthrough	protein-coding
86310	chr16	58814451	58814700	+	0	NA	Intergenic	Intergenic	-80259	NM_002080	2806		NM_002080	ENSG00000125166	GOT2	DEE82|KAT4|KATIV|KYAT4|mitAAT	glutamic-oxaloacetic transaminase 2	protein-coding
187978	chr5	149489521	149489780	+	0	NA	Intergenic	Intergenic	59004	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
225855	chr9	38226351	38227650	+	0	NA	Intergenic	Intergenic	-157773	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
62683	chr13	102657751	102658080	+	0	NA	intron (NR_160411, intron 24 of 28)	intron (NR_160411, intron 24 of 28)	36606	NM_001010977	196541		NM_001010977	ENSG00000139780	METTL21C	C13orf39	methyltransferase 21C, AARS1 lysine	protein-coding
96799	chr17	41870021	41870680	+	0	NA	intron (NM_001096, intron 25 of 28)	intron (NM_001096, intron 25 of 28)	-4927	NM_018143	55175		NM_018143	ENSG00000178502	KLHL11	-	kelch like family member 11	protein-coding
19830	chr1	182844651	182845030	+	0	NA	intron (NM_001357, intron 3 of 27)	AluSz|SINE|Alu	-5249	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
97262	chr17	43006471	43007600	+	0	NA	intron (NM_005533, intron 1 of 6)	intron (NM_005533, intron 1 of 6)	251	NM_005533	3430		NM_005533	ENSG00000068079	IFI35	IFP35	interferon induced protein 35	protein-coding
18787	chr1	167551321	167551830	+	0	NA	intron (NM_003851, intron 1 of 3)	MIRc|SINE|MIR	2187	NM_003851	8804		NM_003851	ENSG00000143162	CREG1	CREG	cellular repressor of E1A stimulated genes 1	protein-coding
14252	chr1	143250451	143250550	+	0	NA	Intergenic	Intergenic	172092	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
1089	chr1	1959871	1960330	+	0	NA	intron (NM_001304360, intron 14 of 38)	intron (NM_001304360, intron 14 of 38)	-40821	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
50541	chr12	47941051	47941700	+	0	NA	Intergenic	Intergenic	-22172	NM_024056	79022		NM_024056	ENSG00000134291	TMEM106C	-	transmembrane protein 106C	protein-coding
78089	chr15	90235521	90236250	+	0	NA	intron (NM_001013657, intron 2 of 3)	intron (NM_001013657, intron 2 of 3)	1676	NM_001322811	390637		NM_001013657	ENSG00000183208	GDPGP1	C15orf58|VTC2	GDP-D-glucose phosphorylase 1	protein-coding
65964	chr14	56150851	56151250	+	0	NA	intron (NM_021255, intron 1 of 5)	intron (NM_021255, intron 1 of 5)	32639	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
57336	chr12	121709651	121710380	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2737	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
229732	chr9	124880351	124880780	+	0	NA	exon (NM_002077, exon 23 of 23)	exon (NM_002077, exon 23 of 23)	18435	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
104595	chr17	81402951	81403250	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-2322	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
215763	chr8	2045651	2045750	+	0	NA	intron (NM_003970, intron 1 of 36).2	intron (NM_003970, intron 1 of 36).2	654	NM_003970	9172		NM_003970	ENSG00000036448	MYOM2	TTNAP	myomesin 2	protein-coding
123940	chr19	55378101	55378700	+	0	NA	TTS (NM_139172)	TTS (NM_139172)	1574	NM_139172	147744		NM_139172	ENSG00000160472	TMEM190	MDAC1	transmembrane protein 190	protein-coding
152807	chr22	21849571	21850050	+	0	NA	intron (NM_138957, intron 1 of 7)	AluJb|SINE|Alu	17835	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
14434	chr1	144381021	144381630	+	0	NA	Intergenic	L1MEd|LINE|L1	-7666	NM_001144032	730262		NM_001144032	ENSG00000271567	PPIAL4E	COAS2|PPIAL4F	peptidylprolyl isomerase A like 4E	protein-coding
98173	chr17	46096121	46096780	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSp|SINE|Alu	96332	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
221723	chr8	127399721	127400030	+	0	NA	promoter-TSS (NR_109834)	promoter-TSS (NR_109834)	-524	NR_109834	101805488		NR_109834	ENSG00000280997	CCAT2	LINC00873|NCCP1	colon cancer associated transcript 2	ncRNA
139198	chr2	219251401	219251680	+	0	NA	intron (NM_001278552, intron 3 of 3)	intron (NM_001278552, intron 3 of 3)	-1703	NM_001355221	80086		NM_001355221	ENSG00000243910	TUBA4B	TUBA4	tubulin alpha 4b	protein-coding
193094	chr6	28882751	28883050	+	0	NA	Intergenic	AluSc8|SINE|Alu	-13630	NR_104117	414760		NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14	ncRNA
178999	chr4	163549471	163549630	+	0	NA	intron (NM_001166373, intron 6 of 7)	intron (NM_001166373, intron 6 of 7)	54860	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
136737	chr2	181253521	181253780	+	0	NA	intron (NR_130784, intron 2 of 4)	MIR|SINE|MIR	52002	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
206739	chr7	36645171	36645580	+	0	NA	intron (NM_001177506, intron 4 of 21)	MLT1A0|LTR|ERVL-MaLR	-45255	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
35041	chr11	579971	580450	+	0	NA	intron (NM_001286582, intron 1 of 17)	intron (NM_001286582, intron 1 of 17)	3740	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
31049	chr10	88961121	88961600	+	0	NA	intron (NM_001320855, intron 1 of 8)	L3|LINE|CR1	-8587	NM_001613	59		NM_001613	ENSG00000107796	ACTA2	ACTSA|SMDYS	actin alpha 2, smooth muscle	protein-coding
109806	chr19	1158201	1158400	+	0	NA	intron (NM_014963, intron 1 of 31)	CpG	15968	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
883	chr1	1645771	1645950	+	0	NA	intron (NM_033486, intron 5 of 19)	AluSx|SINE|Alu	13080	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
182786	chr5	68441301	68441700	+	0	NA	Intergenic	Intergenic	148923	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
135281	chr2	159906421	159906700	+	0	NA	Intergenic	Intergenic	-1804	NM_001198760	100526664		NM_001198759	ENSG00000248672	LY75-CD302	CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6	LY75-CD302 readthrough	protein-coding
44274	chr11	102287921	102288400	+	0	NA	Intergenic	Intergenic	-29324	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
62294	chr13	98988871	98989030	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-10886	NM_001130050	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
212390	chr7	128100371	128100530	+	0	NA	Intergenic	Intergenic	18589	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
133092	chr2	112581901	112582850	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	-2072	NR_163920	84269		NM_032309	ENSG00000125611	CHCHD5	C2orf9|CHTM1|MIC14|MIX14	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding
30878	chr10	86938001	86938400	+	0	NA	intron (NM_024756, intron 6 of 6)	AluJo|SINE|Alu	-17559	NM_001330120	6623		NM_003087	ENSG00000173267	SNCG	BCSG1|SR	synuclein gamma	protein-coding
2982	chr1	12007071	12007230	+	0	NA	exon (NM_001127660, exon 16 of 18)	exon (NM_001127660, exon 16 of 18)	-12348	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
70720	chr14	103342951	103343050	+	0	NA	3' UTR (NM_183004, exon 11 of 11)	3' UTR (NM_183004, exon 11 of 11)	5151	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
129857	chr2	72924121	72924680	+	0	NA	exon (NM_004097, exon 2 of 3)	exon (NM_004097, exon 2 of 3)	6881	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
192721	chr6	26357401	26357600	+	0	NA	Intergenic	AluJb|SINE|Alu	-7659	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
173272	chr4	7052051	7052530	+	0	NA	intron (NM_152293, intron 1 of 1)	intron (NM_152293, intron 1 of 1)	-6059	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
219880	chr8	85502151	85502450	+	0	NA	Intergenic	Intergenic	-37385	NR_121630	100996348		NR_121630		CA3-AS1	-	CA3 antisense RNA 1	ncRNA
63975	chr14	22202451	22202550	+	0	NA	Intergenic	Intergenic	230253	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
176914	chr4	102809121	102809700	+	0	NA	intron (NM_003340, intron 4 of 7)	intron (NM_003340, intron 4 of 7)	16450	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
203147	chr6	166969571	166970200	+	0	NA	Intergenic	LTR10B1|LTR|ERV1	-13335	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
133149	chr2	112683501	112684300	+	0	NA	Intergenic	Intergenic	-37586	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
198077	chr6	90249051	90249950	+	0	NA	intron (NM_001170794, intron 1 of 6)	AluJb|SINE|Alu	47343	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
113478	chr19	9970151	9970750	+	0	NA	intron (NM_015719, intron 54 of 66)	intron (NM_015719, intron 54 of 66)	-33935	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
236852	chrX	79337221	79337700	+	0	NA	Intergenic	L1M3c|LINE|L1	29874	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
146572	chr20	50078471	50079100	+	0	NA	Intergenic	Intergenic	34365	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
30171	chr10	74207021	74207280	+	0	NA	intron (NM_001202449, intron 2 of 9)	MER52A|LTR|ERV1	30387	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
21326	chr1	204523521	204524250	+	0	NA	intron (NM_001204172, intron 1 of 2)	LTR10A|LTR|ERV1	7479	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
225102	chr9	33443851	33444350	+	0	NA	intron (NM_004925, intron 1 of 5)	intron (NM_004925, intron 1 of 5)	3493	NM_004925	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
49718	chr12	31297651	31297950	+	0	NA	intron (NM_021238, intron 3 of 6)	intron (NM_021238, intron 3 of 6)	-26516	NR_026806	79857		NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
161070	chr3	38082521	38082880	+	0	NA	intron (NM_001321153, intron 6 of 36)	HERVH-int|LTR|ERV1	43492	NM_007335	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
11662	chr1	91812921	91813180	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	73101	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
194892	chr6	34680571	34681580	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-15079	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
26181	chr10	14535471	14536100	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	2757	NM_001320740	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
77962	chr15	89368851	89369430	+	0	NA	intron (NR_133003, intron 1 of 6)	intron (NR_133003, intron 1 of 6)	1041	NR_133003	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
120579	chr19	44999451	45000150	+	0	NA	Intergenic	AluJo|SINE|Alu	-1664	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
168524	chr3	143970001	143970230	+	0	NA	Intergenic	Intergenic	-1683	NM_001363944	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
88819	chr16	87410671	87411230	+	0	NA	intron (NM_015144, intron 12 of 12)	MIR3|SINE|MIR	18614	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
32954	chr10	110420471	110421500	+	0	NA	Intergenic	(CATC)n|Simple_repeat|Simple_repeat	-76922	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
233999	chrX	3143101	3143500	+	0	NA	Intergenic	Intergenic	76501	NM_004042	416		NM_004042	ENSG00000062096	ARSF	ASF	arylsulfatase F	protein-coding
103997	chr17	80082521	80083130	+	0	NA	intron (NM_017950, intron 12 of 19)	intron (NM_017950, intron 12 of 19)	-16003	NR_039607	100616121		NR_039607	ENSG00000265561	MIR1268B	-	microRNA 1268b	ncRNA
75419	chr15	65778301	65778900	+	0	NA	intron (NM_001376919, intron 1 of 31)	Tigger1|DNA|TcMar-Tigger	13693	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
22713	chr1	224152651	224153000	+	0	NA	intron (NM_001136115, intron 3 of 3)	AluSq|SINE|Alu	-30415	NM_001321541	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
71411	chr14	105557171	105557700	+	0	NA	Intergenic	AluSx1|SINE|Alu	25580	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
26888	chr10	26391871	26392380	+	0	NA	Intergenic	CpG	-46216	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
156795	chr22	41913221	41913580	+	0	NA	intron (NM_001207020, intron 1 of 3)	intron (NM_001207020, intron 1 of 3)	1674	NM_001353438	440829		NM_001207020	ENSG00000234965	SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
116715	chr19	18447671	18448650	+	0	NA	intron (NM_006532, intron 8 of 11)	AluJo|SINE|Alu	-10027	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
131168	chr2	91809771	91810130	+	0	NA	Intergenic	CpG	34608	NR_003503	645367		NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
146465	chr20	49708871	49709700	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	4593	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
98038	chr17	45429221	45429530	+	0	NA	TTS (NM_174919)	TTS (NM_174919)	3495	NM_174919	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
91322	chr17	4368701	4368900	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2126	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
82142	chr16	14767201	14767430	+	0	NA	Intergenic	L2b|LINE|L2	16502	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
35229	chr11	831801	832000	+	0	NA	TTS (NM_001286606)	TTS (NM_001286606)	-1052	NM_139030	977		NM_004357	ENSG00000177697	CD151	EBS7|GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24	CD151 molecule (Raph blood group)	protein-coding
81546	chr16	9110621	9111380	+	0	NA	intron (NM_014117, intron 3 of 3)	AluSp|SINE|Alu	19356	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
31221	chr10	91635121	91635680	+	0	NA	Intergenic	L1ME4a|LINE|L1	-2329	NM_005398	5507		NM_005398	ENSG00000119938	PPP1R3C	PPP1R5|PTG	protein phosphatase 1 regulatory subunit 3C	protein-coding
84571	chr16	30615051	30615700	+	0	NA	Intergenic	Intergenic	-4600	NR_073481	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
13552	chr1	115469751	115469850	+	0	NA	Intergenic	Intergenic	-131551	NM_002506	4803		NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor	protein-coding
66988	chr14	66746451	66746630	+	0	NA	intron (NM_020806, intron 2 of 22)	L1MD2|LINE|L1	238393	NM_001377516	10243		NM_020806	ENSG00000171723	GPHN	GEPH|GPH|GPHRYN|HKPX1|MOCODC	gephyrin	protein-coding
115205	chr19	14476401	14477450	+	0	NA	TTS (NM_005716)	TTS (NM_005716)	-1571	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
196251	chr6	42901351	42902030	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-10869	NM_001008739	441150		NM_001008739	ENSG00000221821	C6orf226	-	chromosome 6 open reading frame 226	protein-coding
186595	chr5	138508571	138509050	+	0	NA	non-coding (NR_157090, exon 9 of 10)	non-coding (NR_157090, exon 9 of 10)	32901	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
217538	chr8	29289251	29289920	+	0	NA	Intergenic	Intergenic	-26515	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
45590	chr11	118888951	118890530	+	0	NA	intron (NM_001716, intron 1 of 1)	intron (NM_001716, intron 1 of 1)	-3652	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
2254	chr1	8908351	8908650	+	0	NA	Intergenic	HERVK9-int|LTR|ERVK	29665	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
233124	chr9	137142001	137142200	+	0	NA	exon (NM_021569, exon 2 of 19)	exon (NM_021569, exon 2 of 19)	2946	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
122575	chr19	49680351	49681130	+	0	NA	intron (NM_001536, intron 3 of 10)	CpG	-1377	NR_049811	100847074		NR_049811	ENSG00000274306	MIR5088	mir-5088	microRNA 5088	ncRNA
152280	chr22	20298461	20300350	+	0	NA	Intergenic	CpG	20655	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
105813	chr18	2957801	2958280	+	0	NA	intron (NM_001375809, intron 2 of 19)	AluSx|SINE|Alu	-11417	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
102484	chr17	75741871	75742630	+	0	NA	intron (NM_001005619, intron 22 of 38)	MIRb|SINE|MIR	17554	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
10165	chr1	61076301	61077500	+	0	NA	promoter-TSS (NM_001145511)	promoter-TSS (NM_001145511)	-327	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
84620	chr16	30703051	30703150	+	0	NA	intron (NM_006662, intron 3 of 33)	intron (NM_006662, intron 3 of 33)	3929	NM_006662	10847		NM_006662	ENSG00000080603	SRCAP	DEHMBA|DOMO1|EAF1|FLHS|SWR1	Snf2 related CREBBP activator protein	protein-coding
131196	chr2	95030621	95030880	+	0	NA	intron (NM_022440, intron 1 of 1)	intron (NM_022440, intron 1 of 1)	5042	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
1913	chr1	6465251	6466900	+	0	NA	promoter-TSS (NM_003790)	promoter-TSS (NM_003790)	98	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
13044	chr1	111270601	111271380	+	0	NA	Intergenic	CpG	-9534	NR_003928	149620		NM_001013621	ENSG00000290764	CHIAP2	-	chitinase, acidic pseudogene 2	pseudo
45565	chr11	118794921	118795950	+	0	NA	Intergenic	AluSx|SINE|Alu	-4271	NM_004397	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
66239	chr14	61340521	61340780	+	0	NA	intron (NM_006255, intron 1 of 13)	MIRc|SINE|MIR	19207	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
143328	chr20	25623371	25624680	+	0	NA	promoter-TSS (NM_152667)	promoter-TSS (NM_152667)	-11	NM_152667	140838		NM_152667	ENSG00000170191	NANP	C20orf147|HDHD4|dJ694B14.3	N-acetylneuraminic acid phosphatase	protein-coding
124820	chr2	7672001	7672880	+	0	NA	Intergenic	Intergenic	227215	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
142281	chr20	3209001	3210550	+	0	NA	intron (NM_001267623, intron 1 of 5)	CpG	277	NM_181493	3704		NM_033453	ENSG00000125877	ITPA	C20orf37|DEE35|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3	inosine triphosphatase	protein-coding
231690	chr9	131711301	131711750	+	0	NA	intron (NM_001377935, intron 1 of 26)	AluSz6|SINE|Alu	-1683	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
87350	chr16	70350701	70351900	+	0	NA	intron (NM_018332, intron 2 of 11)	AluSx1|SINE|Alu	4397	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
175253	chr4	64862651	64862760	+	0	NA	Intergenic	L1PA2|LINE|L1	141795	NR_033976	401134		NR_033976	ENSG00000250125	LINC02232	-	long intergenic non-protein coding RNA 2232	ncRNA
101808	chr17	73315501	73315900	+	0	NA	Intergenic	Intergenic	-3699	NM_012121	23580		NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein 4	protein-coding
232413	chr9	136078971	136079130	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	16239	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
235884	chrX	52068951	52069280	+	0	NA	promoter-TSS (NM_001272063).2	promoter-TSS (NM_001272063).2	92	NM_001272062	728239		NM_001098800	ENSG00000154545	MAGED4	MAGE-D4|MAGE-E1|MAGE1|MAGEE1	MAGE family member D4	protein-coding
10190	chr1	61743751	61744150	+	0	NA	intron (NM_176877, intron 1 of 42)	MER65D|LTR|ERV1	1470	NM_176877	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
79957	chr16	1770551	1772100	+	0	NA	TTS (NM_001300900)	TTS (NM_001300900)	384	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
16733	chr1	155257471	155258450	+	0	NA	intron (NM_052837, intron 4 of 7).2	AluYh3|SINE|Alu	-2477	NM_006589	10712		NM_006589	ENSG00000160767	ENTREP3	C1orf2|COTE1|FAM189B	endosomal transmembrane epsin interactor 3	protein-coding
47849	chr12	6616751	6617080	+	0	NA	Intergenic	Intergenic	-9536	NM_001273	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
216181	chr8	11805451	11805550	+	0	NA	intron (NM_001287745, intron 2 of 8)	intron (NM_001287745, intron 2 of 8)	2411	NM_001287748	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
53126	chr12	57835101	57835750	+	0	NA	intron (NM_005730, intron 1 of 7)	AluJo|SINE|Alu	-10733	NR_029847	407016		NR_029847	ENSG00000207789	MIR26A2	MIRN26A2|mir-26a-2	microRNA 26a-2	ncRNA
122462	chr19	49525701	49526280	+	0	NA	intron (NM_001136019, intron 6 of 6)	(CT)n|Simple_repeat|Simple_repeat	-2013	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
23875	chr1	234845241	234846150	+	0	NA	Intergenic	L1MEd|LINE|L1	-85639	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
108461	chr18	70553271	70554200	+	0	NA	Intergenic	Intergenic	97219	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
79435	chr16	705401	706430	+	0	NA	promoter-TSS (NM_153350)	promoter-TSS (NM_153350)	-114	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
152001	chr22	19195721	19196080	+	0	NA	intron (NM_001835, intron 26 of 31)	intron (NM_001835, intron 26 of 31)	-17037	NR_046298	6576		NM_005984	ENSG00000100075	SLC25A1	CIC|CMS23|CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
8232	chr1	39693801	39694600	+	0	NA	Intergenic	Intergenic	-2715	NM_001282397	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
200406	chr6	134519151	134519780	+	0	NA	Intergenic	Intergenic	20540	NR_125855	101928304		NR_125855	ENSG00000232310	LINC03002	-	long intergenic non-protein coding RNA 3002	ncRNA
9114	chr1	45331721	45332180	+	0	NA	intron (NR_146883, intron 10 of 15)	intron (NR_146883, intron 10 of 15)	5055	NM_032756	84842		NM_032756	ENSG00000186603	HPDL	4-HPPD-L|GLOXD1|NEDSWMA|SPG83	4-hydroxyphenylpyruvate dioxygenase like	protein-coding
231946	chr9	133133071	133134800	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	-2778	NM_001271774	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
152334	chr22	20421721	20422000	+	0	NA	Intergenic	AluSx1|SINE|Alu	15965	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
188300	chr5	151155001	151156280	+	0	NA	intron (NM_001363114, intron 1 of 24)	intron (NM_001363114, intron 1 of 24)	2139	NM_001155	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
24764	chr1	248841701	248842380	+	0	NA	intron (NM_024836, intron 1 of 3)	intron (NM_024836, intron 1 of 3)	3816	NM_024836	79894		NM_024836	ENSG00000171161	ZNF672	-	zinc finger protein 672	protein-coding
197870	chr6	89088071	89088480	+	0	NA	Intergenic	Intergenic	7524	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
225474	chr9	35608871	35609030	+	0	NA	TTS (NR_039813)	TTS (NR_039813)	856	NR_039813	100616214		NR_039813	ENSG00000263892	MIR4667	mir-4667	microRNA 4667	ncRNA
29701	chr10	72063851	72064650	+	0	NA	intron (NM_014767, intron 9 of 11)	intron (NM_014767, intron 9 of 11)	24301	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
197345	chr6	73442451	73442950	+	0	NA	intron (NM_138441, intron 2 of 4)	AluSg7|SINE|Alu	9597	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
205585	chr7	21427801	21429150	+	0	NA	intron (NM_001326542, intron 1 of 5)	intron (NM_001326542, intron 1 of 5)	392	NM_001326543	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
165302	chr3	84919771	84919930	+	0	NA	Intergenic	AluSx1|SINE|Alu	37760	NR_147147	105377192		NR_147147	ENSG00000242339	LINC02025	-	long intergenic non-protein coding RNA 2025	ncRNA
39093	chr11	48015371	48015530	+	0	NA	intron (NM_002843, intron 1 of 24)	L4_A_Mam|LINE|RTE-X	34891	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
142000	chr20	1440971	1441430	+	0	NA	TTS (NM_001206736)	TTS (NM_001206736)	26492	NM_018839	55968		NM_016143	ENSG00000088833	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 cofactor	protein-coding
85608	chr16	53715221	53715480	+	0	NA	intron (NM_001363897, intron 1 of 7)	intron (NM_001363897, intron 1 of 7)	11194	NM_001080432	79068		NM_001080432	ENSG00000140718	FTO	ALKBH9|BMIQ14|GDFD|IFEX9	FTO alpha-ketoglutarate dependent dioxygenase	protein-coding
6992	chr1	31826721	31827780	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-11199	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
7046	chr1	31946451	31946750	+	0	NA	Intergenic	Intergenic	-8232	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
148264	chr20	63680471	63681030	+	0	NA	intron (NM_032957, intron 14 of 34)	intron (NM_032957, intron 14 of 34)	-15902	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
234291	chrX	13679301	13679500	+	0	NA	Intergenic	L1PA5|LINE|L1	-9721	NM_001195328	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
191374	chr6	7339171	7339330	+	0	NA	intron (NM_001170692, intron 11 of 13)	intron (NM_001170692, intron 11 of 13)	-26051	NM_001292008	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
108790	chr18	77365921	77366380	+	0	NA	Intergenic	Intergenic	116302	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
125426	chr2	11778071	11778530	+	0	NA	intron (NM_001349204, intron 7 of 21)	intron (NM_001349204, intron 7 of 21)	10856	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
171127	chr3	195536971	195537480	+	0	NA	intron (NM_006241, intron 1 of 5)	intron (NM_006241, intron 1 of 5)	6100	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
18852	chr1	167719501	167720300	+	0	NA	Intergenic	AluSx|SINE|Alu	-2082	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
109514	chr19	841451	842450	+	0	NA	intron (NM_002777, intron 1 of 4)	AluY|SINE|Alu	951	NM_002777	5657		NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
141716	chr2	241851501	241851700	+	0	NA	intron (NM_005018, intron 4 of 4)	intron (NM_005018, intron 4 of 4)	7294	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
193394	chr6	30397751	30398030	+	0	NA	Intergenic	Intergenic	52734	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
36742	chr11	9273451	9273750	+	0	NA	Intergenic	Intergenic	-8250	NM_015213	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
111466	chr19	3935821	3936080	+	0	NA	intron (NM_170678, intron 2 of 7)	AluSx|SINE|Alu	2479	NM_001375469	27231		NM_014446	ENSG00000077009	NMRK2	ITGB1BP3|MIBP|NRK2	nicotinamide riboside kinase 2	protein-coding
100297	chr17	59762421	59762680	+	0	NA	intron (NM_001329397, intron 5 of 10)	intron (NM_001329397, intron 5 of 10)	54896	NM_001329401	81671		NM_030938	ENSG00000062716	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding
156822	chr22	41936121	41936400	+	0	NA	Intergenic	MIRb|SINE|MIR	3959	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
19461	chr1	174938301	174938780	+	0	NA	intron (NR_121196, intron 3 of 5)	intron (NR_121196, intron 3 of 5)	15721	NR_121196	101928696		NR_121196	ENSG00000229531	RABGAP1L-AS1	-	RABGAP1L antisense RNA 1	ncRNA
88443	chr16	84843171	84843530	+	0	NA	intron (NM_031476, intron 2 of 14)	intron (NM_031476, intron 2 of 14)	23365	NM_031476	83716		NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2|LGL1	cysteine rich secretory protein LCCL domain containing 2	protein-coding
230299	chr9	127947901	127948100	+	0	NA	intron (NM_203305, intron 3 of 7)	intron (NM_203305, intron 3 of 7)	2714	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
14404	chr1	144275071	144275580	+	0	NA	non-coding (NR_111000, exon 1 of 1)	non-coding (NR_111000, exon 1 of 1)	1437	NR_111000	101060524		NR_111000		LOC101060524	-	D(1B) dopamine receptor-like	pseudo
201238	chr6	143842651	143843950	+	0	NA	promoter-TSS (NM_032860)	promoter-TSS (NM_032860)	27	NM_001329953	84946		NM_032860	ENSG00000135521	LTV1	C6orf93|IPHAK|dJ468K18.4	LTV1 ribosome biogenesis factor	protein-coding
129678	chr2	70303421	70304330	+	0	NA	Intergenic	Intergenic	-1808	NM_001329753	84908		NM_032822	ENSG00000035141	FAM136A	-	family with sequence similarity 136 member A	protein-coding
148786	chr21	8221501	8222100	+	0	NA	intron (NR_003287, intron 1 of 2)	(AC)n|Simple_repeat|Simple_repeat	7912	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
57306	chr12	121663451	121664350	+	0	NA	intron (NM_173855, intron 1 of 5)	intron (NM_173855, intron 1 of 5)	5754	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
177671	chr4	121711621	121712180	+	0	NA	Intergenic	Intergenic	-14920	NM_001154	308		NM_001154	ENSG00000164111	ANXA5	ANX5|CPB-I|ENX2|HEL-S-7|PP4|RPRGL3|VAC-alph	annexin A5	protein-coding
75843	chr15	69475751	69476400	+	0	NA	Intergenic	Intergenic	23257	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
215835	chr8	6779321	6779900	+	0	NA	Intergenic	Intergenic	-34370	NR_039807	100616372		NR_039807	ENSG00000283386	MIR4659B	-	microRNA 4659b	ncRNA
61685	chr13	74030301	74030500	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	103529	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
236780	chrX	79090001	79090650	+	0	NA	Intergenic	Intergenic	-54363	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
137925	chr2	201033171	201033530	+	0	NA	intron (NM_001321618, intron 1 of 10)	AluJb|SINE|Alu	38321	NM_001321619	285172		NM_173822	ENSG00000155744	HYCC2	FAM126B	hyccin PI4KA lipid kinase complex subunit 2	protein-coding
120546	chr19	44926571	44927530	+	0	NA	intron (NR_028414, intron 2 of 3)	intron (NR_028414, intron 2 of 3)	247	NR_028413	342		NR_028412	ENSG00000291128	APOC1P1	-	apolipoprotein C1 pseudogene 1	pseudo
19800	chr1	182600321	182600580	+	0	NA	exon (NM_002928, exon 5 of 5)	exon (NM_002928, exon 5 of 5)	3939	NM_002928	6004		NM_002928	ENSG00000143333	RGS16	A28-RGS14|A28-RGS14P|RGS-R	regulator of G protein signaling 16	protein-coding
194725	chr6	33812451	33812980	+	0	NA	Intergenic	Intergenic	-8712	NM_001040109	4295		NM_002418	ENSG00000096395	MLN	-	motilin	protein-coding
121643	chr19	47479451	47479550	+	0	NA	intron (NM_007059, intron 8 of 11)	intron (NM_007059, intron 8 of 11)	4719	NR_111923	11133		NM_007059	ENSG00000118162	KPTN	2E4|KICS4|MRT41	kaptin, actin binding protein	protein-coding
219752	chr8	81081301	81081830	+	0	NA	intron (NM_018440, intron 1 of 8)	L1MD1|LINE|L1	30503	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
79612	chr16	1093071	1094730	+	0	NA	exon (NM_207419, exon 4 of 5)	exon (NM_207419, exon 4 of 5)	2344	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
91092	chr17	3634621	3635000	+	0	NA	intron (NM_013276, intron 1 of 6)	intron (NM_013276, intron 1 of 6)	1440	NM_013276	23729		NM_013276	ENSG00000197417	SHPK	CARKL|SHK	sedoheptulokinase	protein-coding
70131	chr14	100263101	100263300	+	0	NA	intron (NM_003403, intron 2 of 4)	AluSz|SINE|Alu	-14157	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
52765	chr12	56674471	56675130	+	0	NA	intron (NM_001282601, intron 1 of 6)	AluY|SINE|Alu	13484	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
127775	chr2	44174921	44175380	+	0	NA	intron (NM_177969, intron 1 of 4)	AluSx|SINE|Alu	6275	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
28575	chr10	50991071	50992050	+	0	NA	exon (NM_001098512, exon 1 of 18)	exon (NM_001098512, exon 1 of 18)	672	NM_001098512	5592		NM_006258	ENSG00000185532	PRKG1	AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha	protein kinase cGMP-dependent 1	protein-coding
140514	chr2	233212171	233212530	+	0	NA	Intergenic	MIR|SINE|MIR	-39221	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
38729	chr11	46808771	46809030	+	0	NA	intron (NM_014756, intron 7 of 42)	MER20|DNA|hAT-Charlie	37380	NM_001008938	9793		NM_014756	ENSG00000175216	CKAP5	CHTOG|MSPS|TOG|TOGp|ch-TOG	cytoskeleton associated protein 5	protein-coding
170972	chr3	194537401	194537600	+	0	NA	Intergenic	Intergenic	-46768	NR_047573	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
106610	chr18	22302171	22302330	+	0	NA	Intergenic	Intergenic	115665	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
133176	chr2	112821201	112821430	+	0	NA	Intergenic	Intergenic	15464	NM_000576	3553		NM_000576	ENSG00000125538	IL1B	IL-1|IL1-BETA|IL1F2|IL1beta	interleukin 1 beta	protein-coding
149297	chr21	28831871	28833180	+	0	NA	Intergenic	Intergenic	52842	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
206116	chr7	27241171	27241550	+	0	NA	TTS (NR_120507)	TTS (NR_120507)	-1442	NM_001989	2128		NM_001989	ENSG00000106038	EVX1	EVX-1	even-skipped homeobox 1	protein-coding
233670	chrX	1143671	1144280	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	68674	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
135300	chr2	160270951	160271280	+	0	NA	intron (NR_103775, intron 1 of 1)	intron (NR_103775, intron 1 of 1)	780	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
36308	chr11	3852171	3852330	+	0	NA	Intergenic	AluY|SINE|Alu	-2354	NM_001382581	6786		NM_003156	ENSG00000167323	STIM1	D11S4896E|GOK|IMD10|STRMK|TAM|TAM1	stromal interaction molecule 1	protein-coding
212738	chr7	129906201	129908200	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	45760	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
69566	chr14	96816271	96816580	+	0	NA	intron (NM_003384, intron 1 of 12)	MER90|LTR|ERV1	19043	NM_003384	7443		NM_003384	ENSG00000100749	VRK1	HMNR10|PCH1|PCH1A	VRK serine/threonine kinase 1	protein-coding
53058	chr12	57631751	57632550	+	0	NA	intron (NM_001478, intron 1 of 10)	CpG-5728	529	NM_001276468	2583		NM_001478	ENSG00000135454	B4GALNT1	GALGT|GALNACT|GalNAc-T|SPG26	beta-1,4-N-acetyl-galactosaminyltransferase 1	protein-coding
139815	chr2	230347521	230348280	+	0	NA	intron (NM_138402, intron 2 of 18)	L1M2|LINE|L1	20707	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
3342	chr1	15438101	15438900	+	0	NA	promoter-TSS (NM_007272)	promoter-TSS (NM_007272)	57	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
52790	chr12	56711501	56711930	+	0	NA	TTS (NM_001113203)	TTS (NM_001113203)	13584	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
121744	chr19	47742551	47742650	+	0	NA	3' UTR (NM_014601, exon 6 of 6)	3' UTR (NM_014601, exon 6 of 6)	-2946	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
70838	chr14	103663621	103664080	+	0	NA	intron (NM_001130107, intron 5 of 15)	(AGG)n|Simple_repeat|Simple_repeat	34662	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
210868	chr7	101139551	101139850	+	0	NA	TTS (NM_000602)	TTS (NM_000602)	12596	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
20798	chr1	201149501	201149850	+	0	NA	intron (NM_016456, intron 3 of 5)	intron (NM_016456, intron 3 of 5)	4799	NM_001288565	252839		NM_016456	ENSG00000116857	TMEM9	DERM4|TMEM9A	transmembrane protein 9	protein-coding
200094	chr6	130186821	130188180	+	0	NA	intron (NM_001258275, intron 7 of 13)	intron (NM_001258275, intron 7 of 13)	28385	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
21096	chr1	203339751	203340850	+	0	NA	TTS (NM_002023)	TTS (NM_002023)	10822	NR_103757	2331		NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding
207888	chr7	50400971	50401130	+	0	NA	3' UTR (NM_001291842, exon 5 of 5)	3' UTR (NM_001291842, exon 5 of 5)	49300	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
7321	chr1	32650151	32652150	+	0	NA	promoter-TSS (NR_158775)	promoter-TSS (NR_158775)	-58	NM_005610	5928		NM_005610	ENSG00000162521	RBBP4	NURF55|RBAP48|lin-53	RB binding protein 4, chromatin remodeling factor	protein-coding
71150	chr14	105011971	105012780	+	0	NA	intron (NM_017955, intron 1 of 1)	intron (NM_017955, intron 1 of 1)	8708	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
33760	chr10	122513051	122513350	+	0	NA	intron (NM_002775, intron 8 of 8)	intron (NM_002775, intron 8 of 8)	-47554	NM_001320644	1755		NM_004406	ENSG00000187908	DMBT1	GP340|SAG|SALSA|muclin	deleted in malignant brain tumors 1	protein-coding
167455	chr3	129096071	129096430	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	25554	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
8209	chr1	39657851	39658430	+	0	NA	TTS (NM_032526)	TTS (NM_032526)	13898	NM_032526	84618		NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
141133	chr2	239150071	239151300	+	0	NA	intron (NM_006037, intron 7 of 26)	intron (NM_006037, intron 7 of 26)	44772	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
144285	chr20	34695651	34696300	+	0	NA	Intergenic	Intergenic	-8369	NM_021202	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
48985	chr12	13103421	13104100	+	0	NA	promoter-TSS (NM_001080555)	promoter-TSS (NM_001080555)	-93	NM_001367362	83445		NM_031289	ENSG00000111305	GSG1	-	germ cell associated 1	protein-coding
206634	chr7	36037301	36037500	+	0	NA	Intergenic	Intergenic	-57910	NR_108089	101928618		NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
198226	chr6	98843571	98844230	+	0	NA	Intergenic	CpG	9326	NM_005604	5454		NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
76444	chr15	74806251	74806980	+	0	NA	Intergenic	L2c|LINE|L2	-6220	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
199936	chr6	127902101	127903300	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-1619	NM_001164685	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
235011	chrX	39900771	39900930	+	0	NA	Intergenic	Intergenic	63289	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
228627	chr9	105708471	105708630	+	0	NA	intron (NM_018112, intron 2 of 5)	L2a|LINE|L2	14009	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
92704	chr17	14156721	14156980	+	0	NA	intron (NM_001303, intron 4 of 6)	L2c|LINE|L2	80012	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
33795	chr10	123142301	123142900	+	0	NA	Intergenic	CpG	-5522	NM_005519	3167		NM_005519	ENSG00000188816	HMX2	H6L|Nkx5-2	H6 family homeobox 2	protein-coding
39323	chr11	59107971	59108580	+	0	NA	intron (NM_001142704, intron 1 of 1)	intron (NM_001142704, intron 1 of 1)	1038	NM_198947	374393		NM_198947	ENSG00000189057	FAM111B	CANP|POIKTMP	FAM111 trypsin like peptidase B	protein-coding
25555	chr10	7483651	7484100	+	0	NA	Intergenic	Intergenic	-72389	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
187280	chr5	141557601	141558830	+	0	NA	promoter-TSS (NR_038333)	promoter-TSS (NR_038333)	-96	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
231979	chr9	133239071	133239500	+	0	NA	Intergenic	Intergenic	-30035	NR_110242	29989		NM_014581	ENSG00000171102	OBP2B	LCN14|OBPIIb	odorant binding protein 2B	protein-coding
56602	chr12	118058501	118059730	+	0	NA	intron (NM_001278557, intron 1 of 8)	MER33|DNA|hAT-Charlie	2064	NM_018639	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
57937	chr12	123633171	123635200	+	0	NA	promoter-TSS (NM_001414)	promoter-TSS (NM_001414)	356	NM_001271867	2967		NM_001516	ENSG00000111358	GTF2H3	BTF2|P34|TFB4|TFIIH	general transcription factor IIH subunit 3	protein-coding
101977	chr17	74746671	74747250	+	0	NA	3' UTR (NM_001006638, exon 9 of 9)	3' UTR (NM_001006638, exon 9 of 9)	-1653	NR_037409	100500847		NR_037409	ENSG00000284186	MIR3615	mir-3615	microRNA 3615	ncRNA
153154	chr22	23777601	23777800	+	0	NA	intron (NR_133013, intron 1 of 7).2	AluSg7|SINE|Alu	4851	NR_133013	4320		NM_005940	ENSG00000099953	MMP11	SL-3|ST3|STMY3	matrix metallopeptidase 11	protein-coding
108338	chr18	67104701	67104930	+	0	NA	Intergenic	Intergenic	23231	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
180052	chr5	1077001	1077400	+	0	NA	intron (NM_006598, intron 12 of 23).2	intron (NM_006598, intron 12 of 23).2	-14226	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
6263	chr1	27574251	27574650	+	0	NA	intron (NM_001029882, intron 1 of 6)	MIRb|SINE|MIR	29044	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
163090	chr3	50098971	50099550	+	0	NA	TTS (NR_045388)	TTS (NR_045388)	1728	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
149122	chr21	17614401	17615200	+	0	NA	TTS (NR_149073)	TTS (NR_149073)	-1899	NM_001130914	10950		NM_006806	ENSG00000154640	BTG3	ANA|ANA/BTG3|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding
124571	chr2	667401	667680	+	0	NA	3' UTR (NM_152834, exon 5 of 5)	3' UTR (NM_152834, exon 5 of 5)	9164	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
210896	chr7	101176271	101176430	+	0	NA	intron (NM_198571, intron 1 of 3)	AluSx1|SINE|Alu	2886	NM_001369695	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
39475	chr11	60994171	60995280	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	23045	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
197521	chr6	75855151	75855250	+	0	NA	exon (NM_001300899, exon 12 of 33)	exon (NM_001300899, exon 12 of 33)	105961	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
151418	chr21	46094871	46095030	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-3162	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
215769	chr8	2101621	2102480	+	0	NA	intron (NM_003970, intron 20 of 36).2	intron (NM_003970, intron 20 of 36).2	25461	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
111498	chr19	3974271	3974760	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3416	NM_001375658	1613		NM_001348	ENSG00000167657	DAPK3	DLK|ZIP|ZIPK	death associated protein kinase 3	protein-coding
118695	chr19	38196171	38196330	+	0	NA	intron (NM_015073, intron 18 of 21)	intron (NM_015073, intron 18 of 21)	27972	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
158615	chr3	4866701	4867210	+	0	NA	Intergenic	Intergenic	39546	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
210437	chr7	100097151	100098100	+	0	NA	exon (NM_005916, exon 9 of 15)	exon (NM_005916, exon 9 of 15)	3155	NM_182776	4176		NM_005916	ENSG00000166508	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146|PPP1R104	minichromosome maintenance complex component 7	protein-coding
119304	chr19	39833101	39835150	+	0	NA	promoter-TSS (NM_006483).2	promoter-TSS (NM_006483).2	37	NM_006483	9149		NM_004714	ENSG00000105204	DYRK1B	AOMS3|MIRK	dual specificity tyrosine phosphorylation regulated kinase 1B	protein-coding
129351	chr2	68762421	68763350	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	-12025	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
181830	chr5	52895871	52896030	+	0	NA	intron (NM_181501, intron 9 of 28)	intron (NM_181501, intron 9 of 28)	-93402	NR_073107	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
177358	chr4	110210451	110210550	+	0	NA	Intergenic	AluSp|SINE|Alu	-11885	NM_024090	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
221729	chr8	127574401	127574800	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-92461	NR_117100	727677		NR_024393	ENSG00000246228	CASC8	CARLO1|CARLo-1|LINC00860	cancer susceptibility 8	ncRNA
83519	chr16	27456901	27457580	+	0	NA	Intergenic	Intergenic	-3847	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
206733	chr7	36638351	36639030	+	0	NA	intron (NM_001177506, intron 4 of 21)	intron (NM_001177506, intron 4 of 21)	-38570	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
119031	chr19	38932451	38933250	+	0	NA	3' UTR (NM_021107, exon 2 of 2)	3' UTR (NM_021107, exon 2 of 2)	1896	NM_033363	6183		NM_021107	ENSG00000128626	MRPS12	MPR-S12|MT-RPS12|RPMS12|RPS12|RPSM12|uS12m	mitochondrial ribosomal protein S12	protein-coding
232295	chr9	134455151	134455250	+	0	NA	Intergenic	MER77|LTR|ERVL	48640	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
178993	chr4	163497171	163497330	+	0	NA	intron (NM_018352, intron 1 of 6)	intron (NM_018352, intron 1 of 6)	2560	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
209530	chr7	77125351	77125880	+	0	NA	intron (NM_020879, intron 1 of 18)	intron (NM_020879, intron 1 of 18)	3000	NM_020879	57639		NM_020879	ENSG00000135205	CCDC146	MBO2	coiled-coil domain containing 146	protein-coding
57455	chr12	121919471	121919880	+	0	NA	intron (NM_001178003, intron 1 of 17)	MIRb|SINE|MIR	1083	NM_001178003	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
44754	chr11	112072571	112073050	+	0	NA	intron (NM_001082619, intron 2 of 5)	AluSx|SINE|Alu	1361	NM_001082619	120379		NM_138789	ENSG00000150773	PIH1D2	DNAAF15	PIH1 domain containing 2	protein-coding
54673	chr12	93391451	93392250	+	0	NA	intron (NM_001301023, intron 1 of 4)	intron (NM_001301023, intron 1 of 4)	13272	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
155403	chr22	38350921	38351180	+	0	NA	intron (NR_002821, intron 4 of 4)	intron (NR_002821, intron 4 of 4)	-32966	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
154005	chr22	30412721	30412980	+	0	NA	intron (NM_033382, intron 8 of 10)	AluJo|SINE|Alu	-12918	NM_001003704	51537		NM_016498	ENSG00000242114	MTFP1	HSPC242|MTP18	mitochondrial fission process 1	protein-coding
187334	chr5	141648871	141650000	+	0	NA	exon (NM_033449, exon 5 of 20)	exon (NM_033449, exon 5 of 20)	1983	NM_033449	89848		NM_033449	ENSG00000197948	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
15872	chr1	151460551	151460850	+	0	NA	Intergenic	Intergenic	-1206	NM_001194938	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
158488	chr3	12671	12830	+	0	NA	intron (NR_110824, intron 1 of 3)	intron (NR_110824, intron 1 of 3)	999	NR_110824	102723448		NR_110824	ENSG00000223587	LINC01986	-	long intergenic non-protein coding RNA 1986	ncRNA
151685	chr22	17156121	17156380	+	0	NA	intron (NM_017829, intron 1 of 7)	Tigger3|DNA|TcMar-Tigger	3027	NM_033070	27440		NM_017829	ENSG00000069998	HDHD5	CECR5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding
171292	chr3	195912701	195913430	+	0	NA	non-coding (NR_145450, exon 2 of 2)	non-coding (NR_145450, exon 2 of 2)	-4514	NM_001382273	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
64330	chr14	23910601	23910830	+	0	NA	Intergenic	Intergenic	-43055	NM_001282987	10901		NM_021004	ENSG00000157326	DHRS4	CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2	dehydrogenase/reductase 4	protein-coding
60182	chr13	40251551	40251850	+	0	NA	Intergenic	L3|LINE|CR1	-31198	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
100122	chr17	58346501	58347050	+	0	NA	intron (NR_038414, intron 2 of 3)	intron (NR_038414, intron 2 of 3)	5426	NM_003168	6827		NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H|Supt4a	SPT4 homolog, DSIF elongation factor subunit	protein-coding
47413	chr12	2892101	2892380	+	0	NA	intron (NM_001160408, intron 1 of 11)	intron (NM_001160408, intron 1 of 11)	1349	NM_003324	7289		NM_003324	ENSG00000078246	TULP3	HRCDF|TUBL3	TUB like protein 3	protein-coding
46216	chr11	123707601	123707800	+	0	NA	Intergenic	Intergenic	23285	NM_001301819	7753		NM_003455	ENSG00000166261	ZNF202	ZKSCAN10|ZSCAN42	zinc finger protein 202	protein-coding
131072	chr2	88697321	88697780	+	0	NA	intron (NM_144563, intron 1 of 8)	intron (NM_144563, intron 1 of 8)	5877	NM_144563	22934		NM_144563	ENSG00000153574	RPIA	RPI|RPIAD	ribose 5-phosphate isomerase A	protein-coding
187001	chr5	139744921	139745400	+	0	NA	intron (NR_105053, intron 2 of 2)	intron (NR_105053, intron 2 of 2)	1063	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
233808	chrX	1464021	1465530	+	0	NA	3' UTR (NM_178129, exon 2 of 2)	3' UTR (NM_178129, exon 2 of 2)	-11013	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
50662	chr12	48822901	48823100	+	0	NA	intron (NM_001206915, intron 1 of 11)	intron (NM_001206915, intron 1 of 11)	4504	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
23390	chr1	228206821	228207580	+	0	NA	promoter-TSS (NM_001098623)	promoter-TSS (NM_001098623)	-844	NM_052843	84033		NM_052843	ENSG00000154358	OBSCN	ARHGEF30|RHABDO1|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding
91104	chr17	3663401	3663800	+	0	NA	TTS (NM_001374493)	TTS (NM_001374493)	4978	NM_014604	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
72750	chr15	39608951	39609250	+	0	NA	intron (NM_001324338, intron 11 of 11)	L1MA7|LINE|L1	28021	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
103690	chr17	78808971	78809130	+	0	NA	intron (NR_169585, intron 13 of 19)	intron (NR_169585, intron 13 of 19)	-26708	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
34024	chr10	124712351	124713080	+	0	NA	intron (NR_120630, intron 2 of 2)	intron (NR_120630, intron 2 of 2)	8687	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
149279	chr21	26844971	26845130	+	0	NA	5' UTR (NM_006988, exon 1 of 9)	5' UTR (NM_006988, exon 1 of 9)	359	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
18918	chr1	168413651	168413750	+	0	NA	intron (NR_037851, intron 2 of 3)	AluSq10|SINE|Alu	8956	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
239055	chrY	7281901	7282330	+	0	NA	intron (NR_028062, intron 1 of 7)	AluJb|SINE|Alu	8143	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
203196	chr6	167423701	167423900	+	0	NA	Intergenic	Intergenic	-39290	NR_163194	6953		NM_004610	ENSG00000290751	TCP10L3	TCP10|TCP10A	t-complex 10 like 3 (pseudogene)	pseudo
67757	chr14	73718771	73719330	+	0	NA	3' UTR (NM_194278, exon 12 of 12)	3' UTR (NM_194278, exon 12 of 12)	-4666	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
218171	chr8	41961821	41962080	+	0	NA	intron (NM_001305878, intron 8 of 13)	L2a|LINE|L2	-65209	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
40946	chr11	65316801	65317700	+	0	NA	intron (NM_006779, intron 1 of 1)	intron (NM_006779, intron 1 of 1)	2384	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
73098	chr15	40956421	40956680	+	0	NA	TTS (NM_024111)	TTS (NM_024111)	3079	NM_024111	79094		NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
170294	chr3	184327121	184327380	+	0	NA	exon (NM_001194946, exon 25 of 34)	exon (NM_001194946, exon 25 of 34)	1554	NR_003055	692107		NR_003055	ENSG00000212158	SNORD66	HBII-142	small nucleolar RNA, C/D box 66	snoRNA
23365	chr1	228158621	228159680	+	0	NA	3' UTR (NM_020435, exon 2 of 2)	3' UTR (NM_020435, exon 2 of 2)	5698	NR_103539	574432		NR_103539	ENSG00000203684	IBA57-DT	C1orf148|IBA57-AS1	IBA57 divergent transcript	ncRNA
101124	chr17	65028151	65028850	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	27274	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
179517	chr4	184805501	184805830	+	0	NA	promoter-TSS (NM_001286710)	promoter-TSS (NM_001286710)	-112	NM_001381882	2180		NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long chain family member 1	protein-coding
238123	chrX	136659801	136660000	+	0	NA	3' UTR (NM_000074, exon 5 of 5)	3' UTR (NM_000074, exon 5 of 5)	11742	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
97387	chr17	43360121	43362200	+	0	NA	Intergenic	CpG	27738	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
130074	chr2	74484551	74484850	+	0	NA	intron (NR_164770, intron 2 of 11)	AluSc|SINE|Alu	1619	NR_164771	64427		NM_022492	ENSG00000115282	TTC31	-	tetratricopeptide repeat domain 31	protein-coding
171038	chr3	195185571	195185900	+	0	NA	intron (NM_001308069, intron 2 of 3)	intron (NM_001308069, intron 2 of 3)	37864	NR_102711	101410543		NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
165781	chr3	105786951	105787050	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	80591	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
184984	chr5	113522871	113523580	+	0	NA	intron (NM_001345976, intron 2 of 27)	intron (NM_001345976, intron 2 of 27)	9531	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
143263	chr20	25084601	25085300	+	0	NA	Intergenic	Intergenic	-2809	NM_001256271	30813		NM_014588	ENSG00000100987	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
125315	chr2	10688201	10688400	+	0	NA	intron (NM_024894, intron 1 of 20)	L2a|LINE|L2	1675	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
166237	chr3	112134451	112135880	+	0	NA	non-coding (NR_157393, exon 1 of 1)	non-coding (NR_157393, exon 1 of 1)	1742	NR_157393	112806053		NR_157393	ENSG00000261488	TBILA	-	TGF-beta induced lncRNA	ncRNA
196314	chr6	43069801	43070290	+	0	NA	intron (NM_201522, intron 7 of 16)	intron (NM_201522, intron 7 of 16)	-6269	NM_152881	5754		NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
22504	chr1	221754301	221754900	+	0	NA	Intergenic	AluYf1|SINE|Alu	-12424	NR_111940	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
78407	chr15	92069451	92069900	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	215371	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
30924	chr10	87204871	87205200	+	0	NA	Intergenic	LTR78|LTR|ERV1	-20413	NM_001099338	728118		NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
179491	chr4	184602271	184602430	+	0	NA	intron (NR_131967, intron 1 of 1)	L1PA7|LINE|L1	22522	NR_131965	105377586		NR_131965	ENSG00000254233	LINC02365	LVCAT8	long intergenic non-protein coding RNA 2365	ncRNA
127498	chr2	42271101	42271300	+	0	NA	intron (NM_019063, intron 6 of 22)	intron (NM_019063, intron 6 of 22)	88838	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
113822	chr19	10608721	10609130	+	0	NA	intron (NM_001145056, intron 1 of 21)	AluJb|SINE|Alu	6470	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
195561	chr6	37491171	37491330	+	0	NA	intron (NM_138493, intron 1 of 3)	intron (NM_138493, intron 1 of 3)	8643	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
100279	chr17	59643171	59643630	+	0	NA	intron (NM_004859, intron 1 of 31)	intron (NM_004859, intron 1 of 31)	23505	NM_004859	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
230277	chr9	127924521	127925250	+	0	NA	intron (NM_173492, intron 4 of 4)	(AC)n|Simple_repeat|Simple_repeat	2606	NM_173492	138429		NM_173492	ENSG00000167103	PIP5KL1	PIPKH	phosphatidylinositol-4-phosphate 5-kinase like 1	protein-coding
210341	chr7	99508271	99508880	+	0	NA	intron (NM_145102, intron 2 of 6)	AluSc|SINE|Alu	2570	NM_001318084	23660		NM_014569	ENSG00000196652	ZKSCAN5	ZFP-95|ZFP95|ZNF914|ZSCAN37	zinc finger with KRAB and SCAN domains 5	protein-coding
217729	chr8	30650951	30651580	+	0	NA	intron (NM_001348353, intron 2 of 6)	L1MB8|LINE|L1	6353	NM_001348353	2961		NM_002095	ENSG00000197265	GTF2E2	FE|TF2E2|TFIIE-B|TTD6	general transcription factor IIE subunit 2	protein-coding
181054	chr5	36177151	36177650	+	0	NA	intron (NM_032637, intron 9 of 9)	intron (NM_032637, intron 9 of 9)	25289	NM_032637	6502		NM_005983	ENSG00000145604	SKP2	FBL1|FBXL1|FLB1|p45	S-phase kinase associated protein 2	protein-coding
179760	chr5	261071	261600	+	0	NA	Intergenic	CpG	10189	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
39116	chr11	48090471	48090830	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-6132	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
45079	chr11	117071221	117071900	+	0	NA	intron (NM_001281748, intron 1 of 24)	GA-rich|Low_complexity|Low_complexity	26868	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
85807	chr16	56975701	56976300	+	0	NA	intron (NM_000078, intron 10 of 15)	L2|LINE|L2	-13557	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
65385	chr14	50740901	50741100	+	0	NA	intron (NM_020921, intron 25 of 30)	intron (NM_020921, intron 25 of 30)	-72694	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
41071	chr11	65503861	65504550	+	0	NA	non-coding (NR_002819, exon 1 of 1)	non-coding (NR_002819, exon 1 of 1)	-1912	NR_144569	109136578		NR_144569	ENSG00000274072	MASCRNA	-	MALAT1-associated small cytoplasmic RNA	scRNA
1300	chr1	2344401	2344800	+	0	NA	intron (NM_024848, intron 10 of 13)	intron (NM_024848, intron 10 of 13)	8061	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
103946	chr17	79850501	79850980	+	0	NA	Intergenic	Intergenic	-11300	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
7772	chr1	36185221	36185680	+	0	NA	Intergenic	AluJb|SINE|Alu	29290	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
99429	chr17	50113501	50113700	+	0	NA	intron (NM_174920, intron 10 of 10)	intron (NM_174920, intron 10 of 10)	16560	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
44046	chr11	95161071	95161630	+	0	NA	Intergenic	Intergenic	10811	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
176563	chr4	98626401	98626600	+	0	NA	intron (NM_005723, intron 1 of 7)	L2a|LINE|L2	32111	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
115182	chr19	14436951	14437380	+	0	NA	intron (NM_002741, intron 1 of 21)	MER20|DNA|hAT-Charlie	-3112	NM_213560	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
129800	chr2	71388221	71388480	+	0	NA	intron (NM_014497, intron 10 of 27)	LTR22E|LTR|ERVK	56568	NM_014497	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
95755	chr17	38605721	38607800	+	0	NA	promoter-TSS (NM_025248)	promoter-TSS (NM_025248)	-808	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
53235	chr12	62434251	62434800	+	0	NA	Intergenic	Charlie16a|DNA|hAT-Charlie	-32301	NM_001278472	23041		NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
186826	chr5	139401101	139401700	+	0	NA	intron (NM_194296, intron 4 of 5)	intron (NM_194296, intron 4 of 5)	2689	NM_194296	202051		NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
77108	chr15	78931051	78932430	+	0	NA	5' UTR (NM_001319137, exon 8 of 13)	5' UTR (NM_001319137, exon 8 of 13)	13306	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
37033	chr11	12141371	12141530	+	0	NA	intron (NR_144417, intron 2 of 26)	intron (NR_144417, intron 2 of 26)	3060	NM_001282665	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
48059	chr12	7082901	7083500	+	0	NA	intron (NM_001733, intron 9 of 10)	intron (NM_001733, intron 9 of 10)	8693	NM_001354346	715		NM_001733	ENSG00000159403	C1R	EDS8|EDSPD1	complement C1r	protein-coding
141512	chr2	241205821	241206750	+	0	NA	intron (NM_001370694, intron 10 of 24)	intron (NM_001370694, intron 10 of 24)	17608	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
30677	chr10	80502621	80503550	+	0	NA	intron (NM_001128309, intron 2 of 5)	L2a|LINE|L2	32857	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
77460	chr15	84423321	84423730	+	0	NA	intron (NR_120378, intron 2 of 2).2	intron (NR_120378, intron 2 of 2).2	907	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
98614	chr17	47762051	47762150	+	0	NA	Intergenic	AluSz|SINE|Alu	28864	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
201149	chr6	142915251	142915930	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	29586	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
131147	chr2	91515321	91515580	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	144499	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
124419	chr19	58454321	58454750	+	0	NA	intron (NM_207395, intron 3 of 3)	intron (NM_207395, intron 3 of 3)	2913	NM_207395	388569		NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
86221	chr16	58110601	58110800	+	0	NA	Intergenic	Intergenic	18681	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
36546	chr11	6608301	6609180	+	0	NA	exon (NM_001014794, exon 5 of 13)	exon (NM_001014794, exon 5 of 13)	3476	NM_006284	6881		NM_006284	ENSG00000166337	TAF10	TAF2A|TAF2H|TAFII30	TATA-box binding protein associated factor 10	protein-coding
25448	chr10	6593251	6593750	+	0	NA	Intergenic	Intergenic	-12854	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
171974	chr4	919071	919430	+	0	NA	intron (NM_005255, intron 1 of 27)	intron (NM_005255, intron 1 of 27)	13066	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
102275	chr17	75297321	75298300	+	0	NA	Intergenic	AluSx|SINE|Alu	-8361	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
142057	chr20	1965321	1965880	+	0	NA	intron (NR_134520, intron 2 of 3)	intron (NR_134520, intron 2 of 3)	18390	NR_134520	727993		NR_134520	ENSG00000233896	PDYN-AS1	-	PDYN antisense RNA 1	ncRNA
98775	chr17	48131001	48131800	+	0	NA	Intergenic	Intergenic	23634	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
127466	chr2	42219321	42219780	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-49319	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
90598	chr17	1617451	1617950	+	0	NA	intron (NM_152346, intron 2 of 13).2	intron (NM_152346, intron 2 of 13).2	10716	NM_001321365	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
148582	chr21	5056021	5056280	+	0	NA	Intergenic	Intergenic	33596	NM_001283050	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
117643	chr19	23758121	23759380	+	0	NA	5' UTR (NM_138286, exon 1 of 4)	5' UTR (NM_138286, exon 1 of 4)	141	NM_138286	148213		NM_138286	ENSG00000196172	ZNF681	-	zinc finger protein 681	protein-coding
77801	chr15	88255751	88255850	+	0	NA	intron (NR_038229, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	369	NM_001320134	4916		NM_002530	ENSG00000140538	NTRK3	GP145-TrkC|TRKC|gp145(trkC)	neurotrophic receptor tyrosine kinase 3	protein-coding
120742	chr19	45395171	45395630	+	0	NA	intron (NM_001142502, intron 7 of 12)	intron (NM_001142502, intron 7 of 12)	9669	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
77495	chr15	84630771	84632130	+	0	NA	promoter-TSS (NR_003654)	promoter-TSS (NR_003654)	-10	NR_004859	54581		NM_022050		SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
196087	chr6	42313051	42313350	+	0	NA	intron (NM_033502, intron 3 of 17)	intron (NM_033502, intron 3 of 17)	-95339	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
32230	chr10	101826671	101826830	+	0	NA	TTS (NM_173197)	TTS (NM_173197)	7682	NR_045118	100289509		NR_045118		KCNIP2-AS1	-	KCNIP2 antisense RNA 1	ncRNA
135965	chr2	172091871	172092530	+	0	NA	Intergenic	Intergenic	6693	NM_178120	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
201092	chr6	142821701	142821900	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	123376	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
177945	chr4	138681001	138681200	+	0	NA	Intergenic	Intergenic	331546	NR_133945	105377448		NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
219556	chr8	78520421	78520680	+	0	NA	intron (NM_181839, intron 1 of 2)	intron (NM_181839, intron 1 of 2)	4210	NM_181839	5569		NM_006823	ENSG00000171033	PKIA	PRKACN1	cAMP-dependent protein kinase inhibitor alpha	protein-coding
188357	chr5	151750621	151751280	+	0	NA	intron (NM_004045, intron 2 of 3)	AluJb|SINE|Alu	7681	NM_004045	475		NM_004045	ENSG00000177556	ATOX1	ATX1|HAH1	antioxidant 1 copper chaperone	protein-coding
62467	chr13	99366821	99367550	+	0	NA	intron (NR_026644, intron 7 of 8)	intron (NR_026644, intron 7 of 8)	11054	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
1719	chr1	5666771	5667600	+	0	NA	Intergenic	LTR41B|LTR|ERVL	195556	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
202451	chr6	158046201	158047750	+	0	NA	intron (NM_003898, intron 5 of 26)	intron (NM_003898, intron 5 of 26)	29882	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
146749	chr20	50814221	50814480	+	0	NA	intron (NM_198799, intron 1 of 4)	AluJb|SINE|Alu	19289	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
228452	chr9	99839151	99839450	+	0	NA	intron (NM_173200, intron 6 of 8)	intron (NM_173200, intron 6 of 8)	17415	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
150056	chr21	37386501	37387380	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	19383	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
13276	chr1	112849671	112850050	+	0	NA	non-coding (NR_103746, exon 1 of 7)	non-coding (NR_103746, exon 1 of 7)	783	NR_103746	100996702		NR_103746	ENSG00000215866	LINC01356	LIMp27	long intergenic non-protein coding RNA 1356	ncRNA
69762	chr14	99159951	99160600	+	0	NA	Intergenic	Intergenic	111922	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
8035	chr1	38072051	38072150	+	0	NA	intron (NR_168386, intron 1 of 4)	intron (NR_168386, intron 1 of 4)	-17131	NR_037432	100500801		NR_037432	ENSG00000265596	MIR3659	mir-3659	microRNA 3659	ncRNA
214376	chr7	149720621	149721150	+	0	NA	exon (NM_001290187, exon 4 of 17)	exon (NM_001290187, exon 4 of 17)	5874	NM_032534	84626		NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
147159	chr20	56422151	56423180	+	0	NA	intron (NM_001164114, intron 1 of 5)	intron (NM_001164114, intron 1 of 5)	10405	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
82218	chr16	15019721	15020300	+	0	NA	intron (NM_001324019, intron 12 of 22)	AluY|SINE|Alu	-9613	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
20433	chr1	198359071	198359330	+	0	NA	Intergenic	Intergenic	181480	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
225285	chr9	34462471	34462630	+	0	NA	intron (NM_012144, intron 1 of 19)	L2b|LINE|L2	3745	NM_012144	27019		NM_012144	ENSG00000122735	DNAI1	CILD1|DIC1|ICS1|PCD|oda6	dynein axonemal intermediate chain 1	protein-coding
51165	chr12	50190951	50191450	+	0	NA	intron (NM_001113547, intron 6 of 7)	MamRep605|LTR?|LTR?	10333	NM_001243775	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
203168	chr6	167093371	167094380	+	0	NA	Intergenic	Intergenic	-17932	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
111775	chr19	4405351	4405650	+	0	NA	intron (NM_005483, intron 1 of 14)	AluSg|SINE|Alu	2860	NM_005483	10036		NM_005483	ENSG00000167670	CHAF1A	CAF-1|CAF1|CAF1B|CAF1P150|P150	chromatin assembly factor 1 subunit A	protein-coding
910	chr1	1692371	1693530	+	0	NA	promoter-TSS (NM_001290264)	promoter-TSS (NM_001290264)	-155	NM_001110781	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
163523	chr3	51499051	51499500	+	0	NA	intron (NM_014703, intron 1 of 25)	intron (NM_014703, intron 1 of 25)	727	NM_001171904	9730		NM_014703	ENSG00000145041	DCAF1	RIP|VPRBP	DDB1 and CUL4 associated factor 1	protein-coding
135851	chr2	170819951	170821580	+	0	NA	intron (NM_000817, intron 2 of 16)	MIRc|SINE|MIR	3878	NM_000817	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
231997	chr9	133349471	133349630	+	0	NA	promoter-TSS (NR_000017)	promoter-TSS (NR_000017)	154	NR_002447	26820		NR_002447	ENSG00000206611	SNORD24	RNU24|U24	small nucleolar RNA, C/D box 24	snoRNA
101999	chr17	74769321	74769580	+	0	NA	TTS (NM_004252)	TTS (NM_004252)	6895	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
130938	chr2	87498821	87499180	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	29050	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
116154	chr19	17387751	17388200	+	0	NA	Intergenic	AluY|SINE|Alu	-10633	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
126101	chr2	25878101	25879380	+	0	NA	promoter-TSS (NM_018263)	promoter-TSS (NM_018263)	-253	NM_018263	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
13083	chr1	111556351	111556530	+	0	NA	intron (NM_001370216, intron 1 of 7)	L1MB3|LINE|L1	7563	NM_001081976	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
57548	chr12	122189551	122190280	+	0	NA	intron (NM_152759, intron 4 of 11)	intron (NM_152759, intron 4 of 11)	6792	NM_001098519	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
46524	chr11	128455701	128456100	+	0	NA	Intergenic	Intergenic	66410	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
166010	chr3	108216671	108216830	+	0	NA	intron (NM_018010, intron 3 of 10)	L1MA6|LINE|L1	5674	NM_018010	55081		NM_018010	ENSG00000114446	IFT57	ESRRBL1|HIPPI|MHS4R2|OFD18	intraflagellar transport 57	protein-coding
51190	chr12	50353021	50353650	+	0	NA	exon (NM_001145475, exon 4 of 8)	exon (NM_001145475, exon 4 of 8)	43274	NM_001145475	121006		NM_001145475	ENSG00000185958	FAM186A	-	family with sequence similarity 186 member A	protein-coding
56979	chr12	120550871	120551030	+	0	NA	intron (NM_001330474, intron 2 of 16)	intron (NM_001330474, intron 2 of 16)	16594	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
117744	chr19	29655701	29655900	+	0	NA	Intergenic	LTR16B|LTR|ERVL	-9661	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
30368	chr10	77971001	77971400	+	0	NA	Intergenic	Intergenic	44388	NR_024585	100128292		NR_024585		DLG5-AS1	-	DLG5 antisense RNA 1	ncRNA
26687	chr10	22631851	22632450	+	0	NA	intron (NM_005028, intron 1 of 9)	L1MC4a|LINE|L1	81958	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
129214	chr2	68229021	68229280	+	0	NA	intron (NM_000945, intron 1 of 5)	AluJr|SINE|Alu	23382	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
94564	chr17	29620321	29620580	+	0	NA	intron (NM_032854, intron 1 of 9)	intron (NM_032854, intron 1 of 9)	973	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
140963	chr2	237920651	237920750	+	0	NA	Intergenic	AluJr|SINE|Alu	-46245	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
53313	chr12	64597621	64597880	+	0	NA	Intergenic	AluSx|SINE|Alu	-12745	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
99501	chr17	50197901	50198580	+	0	NA	intron (NM_000088, intron 6 of 50)	intron (NM_000088, intron 6 of 50)	3391	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
15362	chr1	150075971	150076330	+	0	NA	intron (NR_103998, intron 3 of 13)	intron (NR_103998, intron 3 of 13)	8374	NR_103998	11311		NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
233977	chrX	2703171	2704500	+	0	NA	intron (NR_135623, intron 1 of 10)	intron (NR_135623, intron 1 of 10)	12540	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
103979	chr17	80005671	80006350	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	29862	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
114324	chr19	12056401	12056750	+	0	NA	Intergenic	Intergenic	-3614	NM_001080404	729747		NM_001080404	ENSG00000257446	ZNF878	-	zinc finger protein 878	protein-coding
221538	chr8	124713951	124714450	+	0	NA	intron (NM_001363300, intron 1 of 12)	intron (NM_001363300, intron 1 of 12)	14273	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
236919	chrX	89207171	89207330	+	0	NA	Intergenic	Intergenic	460025	NM_001184771	53336		NM_033048	ENSG00000147183	CPXCR1	CT77	CPX chromosome region candidate 1	protein-coding
16498	chr1	154820351	154820600	+	0	NA	intron (NM_170782, intron 2 of 7)	intron (NM_170782, intron 2 of 7)	39401	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
13756	chr1	117002301	117002500	+	0	NA	intron (NM_001256106, intron 1 of 9)	intron (NM_001256106, intron 1 of 9)	650	NM_004258	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
158153	chr22	50192641	50193480	+	0	NA	non-coding (NR_135275, exon 2 of 10)	non-coding (NR_135275, exon 2 of 10)	2473	NM_001320487	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
120597	chr19	45018121	45019330	+	0	NA	intron (NM_006509, intron 3 of 10)	AluSp|SINE|Alu	17261	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
106917	chr18	26167501	26167750	+	0	NA	intron (NM_144662, intron 4 of 6)	MLT1B|LTR|ERVL-MaLR	33756	NM_001308188	143471		NM_144662	ENSG00000154611	PSMA8	PSMA7L	proteasome 20S subunit alpha 8	protein-coding
17554	chr1	156804021	156804280	+	0	NA	Intergenic	MIRc|SINE|MIR	-11600	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
164888	chr3	71094301	71094700	+	0	NA	intron (NM_001244810, intron 7 of 20)	MER58B|DNA|hAT-Charlie	-29576	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
112544	chr19	6534101	6535000	+	0	NA	intron (NM_003811, intron 2 of 2)	intron (NM_003811, intron 2 of 2)	3524	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
100246	chr17	59365351	59366150	+	0	NA	promoter-TSS (NR_039882)	promoter-TSS (NR_039882)	-333	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
42835	chr11	73034371	73035030	+	0	NA	intron (NM_014824, intron 3 of 19)	intron (NM_014824, intron 3 of 19)	107618	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
43355	chr11	76721751	76722250	+	0	NA	promoter-TSS (NR_024042)	promoter-TSS (NR_024042)	-211	NR_024042	390226		NR_024042		GUCY2EP	GC-E|GCD|GUCY2E	guanylate cyclase 2E, pseudogene	pseudo
113795	chr19	10563571	10563980	+	0	NA	intron (NM_023008, intron 3 of 18)	AluJr|SINE|Alu	2235	NM_023008	65095		NM_023008	ENSG00000129347	KRI1	-	KRI1 homolog	protein-coding
153715	chr22	29288901	29289300	+	0	NA	intron (NM_001163285, intron 8 of 16)	intron (NM_001163285, intron 8 of 16)	-17923	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
205359	chr7	13801051	13801350	+	0	NA	Intergenic	Intergenic	185314	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
17042	chr1	156080271	156081000	+	0	NA	intron (NM_001093725, intron 1 of 1)	intron (NM_001093725, intron 1 of 1)	1830	NM_001093725	92312		NM_001093725	ENSG00000254726	MEX3A	MEX-3A|RKHD4|RNF162	mex-3 RNA binding family member A	protein-coding
135357	chr2	160410071	160410380	+	0	NA	intron (NM_016836, intron 1 of 13)	AluY|SINE|Alu	-2343	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
95622	chr17	37642701	37643750	+	0	NA	intron (NM_001291476, intron 1 of 15).2	CpG	221	NM_001291476	11056		NM_007010	ENSG00000278053	DDX52	HUSSY19|ROK1	DExD-box helicase 52	protein-coding
16105	chr1	153629901	153630850	+	0	NA	intron (NM_006271, intron 1 of 2)	intron (NM_006271, intron 1 of 2)	1941	NM_006271	6271		NM_006271	ENSG00000160678	S100A1	S100|S100-alpha|S100A	S100 calcium binding protein A1	protein-coding
190372	chr5	179747901	179748100	+	0	NA	intron (NM_014757, intron 1 of 4)	L1MB2|LINE|L1	15178	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
41803	chr11	66870071	66870230	+	0	NA	intron (NM_022172, intron 7 of 20)	intron (NM_022172, intron 7 of 20)	13086	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
159025	chr3	10758571	10758800	+	0	NA	TTS (NR_027102)	TTS (NR_027102)	5524	NR_152730	285370		NR_027102	ENSG00000226567	LINC00606	-	long intergenic non-protein coding RNA 606	ncRNA
226063	chr9	61860821	61861500	+	0	NA	TTS (NR_144466)	TTS (NR_144466)	1455	NR_144466	105379807		NR_144466		LOC105379807	-	uncharacterized LOC105379807	ncRNA
188965	chr5	163436821	163438230	+	0	NA	promoter-TSS (NR_157056)	promoter-TSS (NR_157056)	-46	NM_001364022	900		NM_004060	ENSG00000113328	CCNG1	CCNG	cyclin G1	protein-coding
166169	chr3	111665951	111666750	+	0	NA	TTS (NR_134917)	TTS (NR_134917)	-8326	NM_153268	257068		NM_153268	ENSG00000240891	PLCXD2	-	phosphatidylinositol specific phospholipase C X domain containing 2	protein-coding
170788	chr3	188974501	188975370	+	0	NA	Intergenic	Intergenic	-27296	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
203072	chr6	166289351	166290180	+	0	NA	Intergenic	L2a|LINE|L2	18627	NM_175922	285800		NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
210525	chr7	100227871	100228550	+	0	NA	intron (NR_166147, intron 2 of 4)	AluJb|SINE|Alu	8962	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
109963	chr19	1387601	1388280	+	0	NA	intron (NM_001363602, intron 2 of 7)	intron (NM_001363602, intron 2 of 7)	4033	NM_001363602	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
23020	chr1	226310571	226311130	+	0	NA	Intergenic	Intergenic	-1083	NM_001270410	286826		NM_173083	ENSG00000183814	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 DREAM MuvB core complex component	protein-coding
98255	chr17	46179051	46179950	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	13282	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
198142	chr6	90476301	90477230	+	0	NA	Intergenic	Intergenic	110307	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
169184	chr3	156697821	156698080	+	0	NA	intron (NM_001184718, intron 4 of 5)	Tigger1|DNA|TcMar-Tigger	21286	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
136012	chr2	172433171	172433330	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	5664	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
88484	chr16	85104151	85104250	+	0	NA	intron (NM_001366920, intron 5 of 7)	intron (NM_001366920, intron 5 of 7)	8272	NM_198491	339145		NM_198491	ENSG00000153789	CIBAR2	FAM92B	CBY1 interacting BAR domain containing 2	protein-coding
7640	chr1	35574701	35575330	+	0	NA	intron (NM_178548, intron 3 of 6)	intron (NM_178548, intron 3 of 6)	1701	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
34394	chr10	132363971	132364630	+	0	NA	intron (NM_030626, intron 9 of 10)	(CACTCA)n|Simple_repeat|Simple_repeat	26960	NM_001309474	80313		NM_030626	ENSG00000148814	LRRC27	-	leucine rich repeat containing 27	protein-coding
9274	chr1	46339271	46339430	+	0	NA	promoter-TSS (NR_045789)	promoter-TSS (NR_045789)	-827	NR_045789	387338		NM_199044	ENSG00000117481	NSUN4	SHTAP	NOP2/Sun RNA methyltransferase 4	protein-coding
149246	chr21	25732421	25732880	+	0	NA	intron (NM_001003697, intron 1 of 3)	AluJb|SINE|Alu	-2322	NM_002040	2551		NM_002040	ENSG00000154727	GABPA	E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07	GA binding protein transcription factor subunit alpha	protein-coding
198099	chr6	90289171	90289580	+	0	NA	intron (NM_021813, intron 1 of 8)	MIR|SINE|MIR	7468	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
173994	chr4	26315401	26316050	+	0	NA	intron (NM_001374401, intron 1 of 11)	MER11A|LTR|ERVK	-4021	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
229017	chr9	113738721	113739450	+	0	NA	Intergenic	Intergenic	-137197	NM_001318040	114991		NM_133374	ENSG00000157657	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
73328	chr15	41963901	41964100	+	0	NA	intron (NM_139265, intron 1 of 5)	AluY|SINE|Alu	8557	NM_139265	30844		NM_139265	ENSG00000103966	EHD4	PAST4	EH domain containing 4	protein-coding
144102	chr20	33819001	33819250	+	0	NA	intron (NM_176812, intron 1 of 4)	AluSz|SINE|Alu	7777	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
215445	chr7	157827071	157827230	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	-27435	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
188851	chr5	159208901	159210550	+	0	NA	promoter-TSS (NM_001199383)	promoter-TSS (NM_001199383)	-172	NM_001199383	153830		NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding
75884	chr15	69749921	69750580	+	0	NA	Intergenic	Intergenic	-84984	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
214043	chr7	143360601	143360800	+	0	NA	intron (NM_001371250, intron 1 of 6)	intron (NM_001371250, intron 1 of 6)	1380	NM_014690	9715		NM_014690	ENSG00000159784	FAM131B	-	family with sequence similarity 131 member B	protein-coding
28603	chr10	56359901	56360350	+	0	NA	exon (NM_007057, exon 3 of 9)	exon (NM_007057, exon 3 of 9)	1134	NM_007057	11130		NM_007057	ENSG00000122952	ZWINT	HZwint-1|KNTC2AP|SIP30|ZWINT1	ZW10 interacting kinetochore protein	protein-coding
156478	chr22	41265621	41266280	+	0	NA	intron (NM_001278651, intron 5 of 16)	AluY|SINE|Alu	-12900	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
223727	chr8	144470751	144471130	+	0	NA	intron (NM_145754, intron 12 of 16)	intron (NM_145754, intron 12 of 16)	4603	NM_001369769	90990		NM_145754	ENSG00000167702	KIFC2	-	kinesin family member C2	protein-coding
120411	chr19	43785251	43785700	+	0	NA	Intergenic	Intergenic	-4502	NM_002250	3783		NM_002250	ENSG00000104783	KCNN4	DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium calcium-activated channel subfamily N member 4	protein-coding
84737	chr16	30943301	30943850	+	0	NA	intron (NM_001382781, intron 9 of 10)	AluY|SINE|Alu	-5493	NM_152288	93129		NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
25626	chr10	8083301	8084100	+	0	NA	Intergenic	Intergenic	29012	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
197608	chr6	81753301	81754480	+	0	NA	Intergenic	CpG-23786	-1209	NM_017633	55603		NM_017633	ENSG00000112773	TENT5A	C6orf37|FAM46A|OI18|XTP11	terminal nucleotidyltransferase 5A	protein-coding
212529	chr7	128838251	128838550	+	0	NA	exon (NM_001127487, exon 7 of 47)	exon (NM_001127487, exon 7 of 47)	7994	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
175889	chr4	80070821	80071200	+	0	NA	intron (NM_001145794, intron 2 of 15)	intron (NM_001145794, intron 2 of 15)	2219	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
181440	chr5	40837121	40837680	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2178	NM_000997	6167		NM_000997	ENSG00000145592	RPL37	L37|eL37	ribosomal protein L37	protein-coding
144474	chr20	35610721	35611480	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-3538	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
28069	chr10	43304201	43305180	+	0	NA	Intergenic	Intergenic	-37625	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
210847	chr7	101077351	101078100	+	0	NA	Intergenic	Intergenic	-7756	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
6157	chr1	27401051	27401850	+	0	NA	Intergenic	Intergenic	8828	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
49386	chr12	22425521	22425980	+	0	NA	Intergenic	LTR79|LTR|ERVL	-91036	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
229384	chr9	121124301	121125100	+	0	NA	intron (NM_007018, intron 13 of 43)	AluJb|SINE|Alu	2930	NM_001330762	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
19785	chr1	182388901	182389130	+	0	NA	intron (NM_001033044, intron 1 of 6)	intron (NM_001033044, intron 1 of 6)	2389	NM_001033056	2752		NM_002065	ENSG00000135821	GLUL	DEE116|GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
197958	chr6	89956101	89956300	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	61731	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
133238	chr2	113234101	113234600	+	0	NA	intron (NM_013953, intron 7 of 9)	intron (NM_013953, intron 7 of 9)	-1177	NR_047570	654433		NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
172487	chr4	2240621	2241300	+	0	NA	5' UTR (NM_001303143, exon 3 of 6)	5' UTR (NM_001303143, exon 3 of 6)	1161	NM_001303143	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
95275	chr17	35509051	35509150	+	0	NA	intron (NM_001363830, intron 2 of 4)	intron (NM_001363830, intron 2 of 4)	-21361	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
238770	chrX	154358221	154359000	+	0	NA	intron (NM_001110556, intron 26 of 47)	intron (NM_001110556, intron 26 of 47)	16024	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
173129	chr4	6619121	6619700	+	0	NA	intron (NM_015274, intron 17 of 18)	intron (NM_015274, intron 17 of 18)	-20681	NM_033296	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
104271	chr17	80789321	80789580	+	0	NA	intron (NM_020761, intron 6 of 33)	intron (NM_020761, intron 6 of 33)	16182	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
92513	chr17	8896051	8896630	+	0	NA	intron (NM_001142633, intron 5 of 18)	intron (NM_001142633, intron 5 of 18)	16177	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
81308	chr16	4692701	4694750	+	0	NA	promoter-TSS (NM_032349)	promoter-TSS (NM_032349)	7	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
214349	chr7	149495571	149495730	+	0	NA	intron (NM_152557, intron 1 of 6)	L3|LINE|CR1	2157	NM_001163474	155061		NM_152557	ENSG00000181220	ZNF746	PARIS	zinc finger protein 746	protein-coding
74145	chr15	55257601	55258450	+	0	NA	intron (NM_183234, intron 1 of 6)	AluSz6|SINE|Alu	12261	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
222894	chr8	142786501	142786980	+	0	NA	promoter-TSS (NM_003695)	promoter-TSS (NM_003695)	-201	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
35905	chr11	2417451	2417780	+	0	NA	intron (NM_014555, intron 7 of 23)	intron (NM_014555, intron 7 of 23)	5430	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
134758	chr2	145715151	145715250	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-871857	NR_026904	728773		NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
146776	chr20	50911201	50911400	+	0	NA	intron (NM_001347511, intron 1 of 4)	L1M2|LINE|L1	-1509	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
198393	chr6	105651971	105652300	+	0	NA	Intergenic	Intergenic	-249053	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
4188	chr1	19435371	19435930	+	0	NA	intron (NM_001313932, intron 1 of 4)	MIRb|SINE|MIR	48645	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
80293	chr16	2257101	2257500	+	0	NA	intron (NM_080594, intron 6 of 7)	intron (NM_080594, intron 6 of 7)	-5713	NM_001919	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
183515	chr5	79613801	79614650	+	0	NA	intron (NM_173797, intron 2 of 15)	AluSq2|SINE|Alu	1784	NM_001349554	167153		NM_173797	ENSG00000164329	TENT2	APD4|GLD2|PAPD4|TUT2	terminal nucleotidyltransferase 2	protein-coding
59997	chr13	32425201	32425400	+	0	NA	3' UTR (NM_001353637, exon 2 of 2)	3' UTR (NM_001353637, exon 2 of 2)	2830	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
72270	chr15	30696501	30696800	+	0	NA	intron (NR_038255, intron 1 of 3)	intron (NR_038255, intron 1 of 3)	37933	NR_038254	100288637		NR_038253	ENSG00000187951	LOC100288637	-	OTU deubiquitinase 7A pseudogene	pseudo
73964	chr15	51836821	51837080	+	0	NA	intron (NM_014547, intron 1 of 9)	intron (NM_014547, intron 1 of 9)	7297	NM_014547	29766		NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
5941	chr1	26883501	26884100	+	0	NA	intron (NM_018066, intron 4 of 4)	AluSq2|SINE|Alu	6483	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
143686	chr20	32113001	32113200	+	0	NA	intron (NM_001363731, intron 1 of 17)	intron (NM_001363731, intron 1 of 17)	3372	NM_001363731	9777		NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
209362	chr7	76282471	76283200	+	0	NA	exon (NM_001110199, exon 13 of 15)	exon (NM_001110199, exon 13 of 15)	-19838	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
97189	chr17	42683651	42684330	+	0	NA	intron (NM_003632, intron 2 of 23)	CpG-11171	1459	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
77286	chr15	82268571	82268730	+	0	NA	intron (NM_001348706, intron 2 of 2)	intron (NM_001348706, intron 2 of 2)	5832	NM_001348699	283726		NM_001008226	ENSG00000188659	SAXO2	FAM154B	stabilizer of axonemal microtubules 2	protein-coding
228920	chr9	113114351	113114650	+	0	NA	non-coding (NR_024366, exon 3 of 3)	non-coding (NR_024366, exon 3 of 3)	1604	NR_024366	286333		NR_024366	ENSG00000231528	FAM225A	C9orf109|LINC00256A|NCRNA00256A	family with sequence similarity 225 member A	ncRNA
43406	chr11	77153821	77154080	+	0	NA	intron (NM_001369365, intron 5 of 49)	intron (NM_001369365, intron 5 of 49)	25704	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
229230	chr9	114925271	114925430	+	0	NA	intron (NM_001244, intron 1 of 3)	LTR32|LTR|ERVL	5241	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
1444	chr1	2642471	2644180	+	0	NA	intron (NM_001242672, intron 7 of 7)	CpG	-10309	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
54505	chr12	92096651	92097150	+	0	NA	intron (NR_132341, intron 1 of 4)	MLT1K|LTR|ERVL-MaLR	44813	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
76483	chr15	74889351	74890850	+	0	NA	promoter-TSS (NM_001289156)	promoter-TSS (NM_001289156)	58	NM_001289157	4351		NM_002435	ENSG00000178802	MPI	CDG1B|PMI|PMI1	mannose phosphate isomerase	protein-coding
230026	chr9	127219601	127219800	+	0	NA	3' UTR (NM_001322324, exon 18 of 18)	3' UTR (NM_001322324, exon 18 of 18)	-43962	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
101670	chr17	68333801	68334000	+	0	NA	intron (NM_001352901, intron 2 of 11)	intron (NM_001352901, intron 2 of 11)	41765	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
81742	chr16	11359471	11359830	+	0	NA	Intergenic	Intergenic	14191	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
226369	chr9	70256901	70257100	+	0	NA	intron (NR_039990, intron 2 of 3)	AluSz|SINE|Alu	1874	NR_039990	100507299		NR_039990		SMC5-DT	MAMDC2-AS2|SMC5-AS1	SMC5 divergent transcript	ncRNA
204455	chr7	4625921	4626380	+	0	NA	Intergenic	L2c|LINE|L2	-56145	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
201176	chr6	142953501	142954000	+	0	NA	Intergenic	Intergenic	-8574	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
205053	chr7	6589601	6591000	+	0	NA	TTS (NM_001134389)	TTS (NM_001134389)	279	NM_001303039	79034		NM_024067	ENSG00000146576	INTS15	C7orf26	integrator complex subunit 15	protein-coding
199705	chr6	125264571	125264730	+	0	NA	TTS (NM_001318903)	TTS (NM_001318903)	37317	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
179336	chr4	182915071	182915230	+	0	NA	intron (NM_001012732, intron 2 of 5)	intron (NM_001012732, intron 2 of 5)	2103	NM_001351747	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
21113	chr1	203609901	203610300	+	0	NA	Intergenic	Intergenic	-16687	NM_001001396	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
70637	chr14	102913751	102914250	+	0	NA	Intergenic	Intergenic	-8663	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
2868	chr1	11352921	11353180	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	79852	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
52481	chr12	55975471	55975830	+	0	NA	intron (NM_002868, intron 1 of 5)	intron (NM_002868, intron 1 of 5)	1572	NM_002868	5869		NM_002868	ENSG00000111540	RAB5B	-	RAB5B, member RAS oncogene family	protein-coding
67277	chr14	69242601	69242800	+	0	NA	non-coding (NR_034165, exon 11 of 11)	non-coding (NR_034165, exon 11 of 11)	-17458	NM_001168368	57452		NM_020692	ENSG00000100626	GALNT16	GALNACT16|GALNTL1|GalNAc-T16	polypeptide N-acetylgalactosaminyltransferase 16	protein-coding
77073	chr15	78899021	78899930	+	0	NA	Intergenic	AluJb|SINE|Alu	26486	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
5319	chr1	25235151	25235630	+	0	NA	Intergenic	AluSx|SINE|Alu	-2888	NM_207170	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
57276	chr12	121631271	121631580	+	0	NA	intron (NM_032790, intron 2 of 2)	intron (NM_032790, intron 2 of 2)	4875	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
65850	chr14	55028471	55028830	+	0	NA	intron (NM_080867, intron 1 of 1)	intron (NM_080867, intron 1 of 1)	1414	NM_080867	122809		NM_080867	ENSG00000180008	SOCS4	SOCS7	suppressor of cytokine signaling 4	protein-coding
28970	chr10	63246571	63246730	+	0	NA	intron (NM_001322252, intron 2 of 24)	L1MA4|LINE|L1	22573	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
116382	chr19	17943801	17944450	+	0	NA	TTS (NM_001136203)	TTS (NM_001136203)	-7177	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
202988	chr6	162436821	162436900	+	0	NA	intron (NM_013987, intron 2 of 10)	AluSx1|SINE|Alu	-290272	NM_152410	135138		NM_152410	ENSG00000112530	PACRG	BUG21|GLUP|HAK005771|PACRG2.1|PARK2CRG|pf12	parkin coregulated	protein-coding
20288	chr1	197124371	197124530	+	0	NA	intron (NM_018136, intron 12 of 27)	intron (NM_018136, intron 12 of 27)	22219	NM_018136	259266		NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	assembly factor for spindle microtubules	protein-coding
56473	chr12	116136371	116136600	+	0	NA	intron (NM_015335, intron 2 of 30)	Charlie29a|DNA|hAT-Charlie	12169	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
82396	chr16	16150401	16150600	+	0	NA	intron (NR_147784, intron 28 of 28)	intron (NR_147784, intron 28 of 28)	72971	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
104344	chr17	80978871	80979030	+	0	NA	Intergenic	Intergenic	-7737	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
56325	chr12	112847851	112847950	+	0	NA	intron (NM_001347955, intron 4 of 20)	intron (NM_001347955, intron 4 of 20)	56152	NM_001347954	22895		NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding
52280	chr12	54577601	54578000	+	0	NA	intron (NM_001315534, intron 14 of 14)	intron (NM_001315534, intron 14 of 14)	10859	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
139350	chr2	219637071	219637500	+	0	NA	intron (NR_048551, intron 16 of 22)	(GT)n|Simple_repeat|Simple_repeat	9655	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
135728	chr2	169366301	169366500	+	0	NA	Intergenic	AluJo|SINE|Alu	-3866	NM_004525	4036		NM_004525	ENSG00000081479	LRP2	DBS|GP330|LRP-2	LDL receptor related protein 2	protein-coding
183386	chr5	77640321	77640880	+	0	NA	Intergenic	CpG	-1887	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
20939	chr1	202214201	202214830	+	0	NA	intron (NM_001017404, intron 1 of 15)	CpG	360	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
29351	chr10	69515551	69516200	+	0	NA	Intergenic	Intergenic	57547	NM_020999	50674		NM_020999	ENSG00000122859	NEUROG3	Atoh5|Math4B|NGN-3|bHLHa7|ngn3	neurogenin 3	protein-coding
72471	chr15	32469071	32469430	+	0	NA	Intergenic	AluJo|SINE|Alu	-13616	NM_001277308	728047		NM_001277308	ENSG00000206127	GOLGA8O	-	golgin A8 family member O	protein-coding
21773	chr1	206922921	206923670	+	0	NA	Intergenic	Intergenic	-1354	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
195114	chr6	35647301	35647830	+	0	NA	intron (NM_001145775, intron 2 of 11)	HAL1ME|LINE|L1	17224	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
57083	chr12	121024971	121025380	+	0	NA	intron (NM_198213, intron 3 of 4)	AluSg7|SINE|Alu	-8688	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
126115	chr2	26032971	26034930	+	0	NA	promoter-TSS (NM_016131)	promoter-TSS (NM_016131)	-134	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
13548	chr1	115112671	115113650	+	0	NA	Intergenic	Intergenic	-23657	NM_005725	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
230844	chr9	129102371	129102530	+	0	NA	exon (NM_001346546, exon 6 of 15)	exon (NM_001346546, exon 6 of 15)	8343	NM_001346547	1384		NM_000755	ENSG00000095321	CRAT	CAT|CAT1|NBIA8	carnitine O-acetyltransferase	protein-coding
69996	chr14	100058421	100059500	+	0	NA	intron (NM_001330221, intron 1 of 13)	intron (NM_001330221, intron 1 of 13)	-6462	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
102524	chr17	75816201	75816400	+	0	NA	intron (NM_001080419, intron 7 of 15)	intron (NM_001080419, intron 7 of 15)	28104	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
110226	chr19	1762451	1762750	+	0	NA	intron (NM_001080488, intron 1 of 1)	CpG	9094	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
207776	chr7	50205021	50205820	+	0	NA	Intergenic	Intergenic	-98644	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
12587	chr1	108961971	108962130	+	0	NA	intron (NM_001377462, intron 1 of 11)	MIR|SINE|MIR	1434	NM_001377458	23155		NM_015127	ENSG00000121940	CLCC1	MCLC|RP32	chloride channel CLIC like 1	protein-coding
125978	chr2	25278171	25278330	+	0	NA	intron (NR_135490, intron 4 of 23)	intron (NR_135490, intron 4 of 23)	-25935	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
54402	chr12	89962771	89963000	+	0	NA	Intergenic	Intergenic	15192	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
87700	chr16	74774501	74775130	+	0	NA	promoter-TSS (NM_024306)	promoter-TSS (NM_024306)	5	NM_024306	79152		NM_024306	ENSG00000103089	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
186450	chr5	137629521	137629950	+	0	NA	intron (NM_017415, intron 12 of 14)	intron (NM_017415, intron 12 of 14)	17914	NR_030588	100126343		NR_030588	ENSG00000216009	MIR874	MIRN874|hsa-mir-874|mir-874	microRNA 874	ncRNA
225010	chr9	33127871	33128030	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	19258	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
58854	chr12	132976871	132977130	+	0	NA	Intergenic	LTR13|LTR|ERVK	-9367	NM_019591	7574		NM_019591	ENSG00000198393	ZNF26	HEL-179|KOX20	zinc finger protein 26	protein-coding
132825	chr2	110573621	110574130	+	0	NA	intron (NM_001384363, intron 1 of 22).2	AluSx3|SINE|Alu	3025	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
43133	chr11	75272671	75273300	+	0	NA	intron (NM_020251, intron 11 of 14)	intron (NM_020251, intron 11 of 14)	32211	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
200545	chr6	136262151	136262450	+	0	NA	intron (NM_001363659, intron 10 of 11)	intron (NM_001363659, intron 10 of 11)	-11989	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
24039	chr1	235284821	235285280	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJr|SINE|Alu	-42166	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
238558	chrX	153797601	153797800	+	0	NA	intron (NR_037927, intron 5 of 7)	intron (NR_037927, intron 5 of 7)	3032	NM_006280	6748		NM_006280	ENSG00000180879	SSR4	CDG1Y|TRAPD	signal sequence receptor subunit 4	protein-coding
223358	chr8	143869501	143869700	+	0	NA	exon (NM_031308, exon 2 of 2)	exon (NM_031308, exon 2 of 2)	8867	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
39256	chr11	57717571	57718300	+	0	NA	intron (NR_144933, intron 1 of 6)	intron (NR_144933, intron 1 of 6)	5342	NM_015959	51075		NM_015959	ENSG00000213593	TMX2	CGI-31|NEDMCMS|PDIA12|PIG26|TXNDC14	thioredoxin related transmembrane protein 2	protein-coding
96908	chr17	42130321	42130580	+	0	NA	exon (NM_001252039, exon 3 of 7)	exon (NM_001252039, exon 3 of 7)	7646	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
190695	chr6	190201	190900	+	0	NA	intron (NR_126020, intron 2 of 7)	MLT1B|LTR|ERVL-MaLR	14934	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
166285	chr3	112497671	112498500	+	0	NA	intron (NM_001085357, intron 1 of 3)	MamSINE1|SINE|tRNA-RTE	1387	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
14897	chr1	147046521	147047180	+	0	NA	Intergenic	Intergenic	-3811	NR_024442	728989		NR_024442		LOC728989	-	phosphodiesterase 4D interacting protein pseudogene	pseudo
134570	chr2	144227551	144227650	+	0	NA	intron (NM_001164629, intron 2 of 11)	L2b|LINE|L2	9739	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
148878	chr21	8448751	8450130	+	0	NA	Intergenic	Intergenic	8294	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
205425	chr7	16656401	16656600	+	0	NA	intron (NM_001159767, intron 1 of 11)	L1MC4|LINE|L1	-4714	NM_001362717	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
204023	chr7	1919921	1921050	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	20086	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
74644	chr15	60843251	60843350	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	161731	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
213038	chr7	131042201	131042850	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	64505	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
36278	chr11	3800701	3800900	+	0	NA	intron (NR_027017, intron 1 of 7)	AluSc8|SINE|Alu	2902	NM_001346401	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
215702	chr8	1374001	1374200	+	0	NA	intron (NM_001346810, intron 3 of 14)	intron (NM_001346810, intron 3 of 14)	-71493	NR_111948	286083		NR_033895	ENSG00000275427	LOC286083	-	uncharacterized LOC286083	ncRNA
216983	chr8	23083701	23084700	+	0	NA	promoter-TSS (NR_046173)	promoter-TSS (NR_046173)	-155	NR_046173	254896		NR_046173	ENSG00000284948	LOC254896	-	uncharacterized LOC254896	ncRNA
142112	chr20	2662221	2662680	+	0	NA	intron (NR_136344, intron 4 of 12)	intron (NR_136344, intron 4 of 12)	1766	NM_174855	3420		NM_006899	ENSG00000101365	IDH3B	RP46	isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta	protein-coding
115354	chr19	15222021	15222280	+	0	NA	Intergenic	AluSg|SINE|Alu	10298	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
125301	chr2	10580001	10580200	+	0	NA	intron (NM_024894, intron 19 of 20)	intron (NM_024894, intron 19 of 20)	109875	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
223671	chr8	144395021	144395280	+	0	NA	promoter-TSS (NR_030635)	promoter-TSS (NR_030635)	-920	NR_030635	100126351		NR_030635	ENSG00000284310	MIR939	MIRN939|hsa-mir-939|mir-939	microRNA 939	ncRNA
88767	chr16	86987951	86988250	+	0	NA	Intergenic	Intergenic	-69684	NR_126008	440390		NR_126008	ENSG00000232190	LINC02181	-	long intergenic non-protein coding RNA 2181	ncRNA
99892	chr17	56792621	56793280	+	0	NA	intron (NM_001085430, intron 7 of 7)	(GTG)n|Simple_repeat|Simple_repeat	40970	NM_001085430	339210		NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
162790	chr3	49099071	49099230	+	0	NA	TTS (NR_106950)	TTS (NR_106950)	764	NR_106950	102465536		NR_106950	ENSG00000284488	MIR6890	hsa-mir-6890	microRNA 6890	ncRNA
125034	chr2	9596551	9597350	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	34047	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
130829	chr2	87072001	87072550	+	0	NA	intron (NR_026846, intron 1 of 10)	intron (NR_026846, intron 1 of 10)	4138	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
200827	chr6	137976501	137976850	+	0	NA	Intergenic	L2|LINE|L2	-30875	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
216212	chr8	11915901	11916100	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-47913	NM_001384723	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
196035	chr6	42037871	42038300	+	0	NA	intron (NM_001287434, intron 1 of 4)	Charlie1|DNA|hAT-Charlie	10809	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
99923	chr17	57010051	57010580	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	32184	NM_021626	59342		NM_021626	ENSG00000121064	SCPEP1	HSCP1|RISC	serine carboxypeptidase 1	protein-coding
132547	chr2	106190121	106190380	+	0	NA	intron (NR_165308, intron 1 of 14)	HAL1|LINE|L1	4051	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
11000	chr1	84611371	84612130	+	0	NA	intron (NR_125761, intron 2 of 2)	LTR19C|LTR|ERV1	9281	NR_125761	103695366		NR_125761		LINC01461	TCONS_00001552	long intergenic non-protein coding RNA 1461	ncRNA
202549	chr6	158647471	158647630	+	0	NA	Intergenic	Intergenic	-2464	NM_001009991	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
174431	chr4	39529171	39529530	+	0	NA	intron (NR_047679, intron 1 of 4)	AluSx1|SINE|Alu	1511	NR_047679	100885776		NR_047679	ENSG00000249348	UGDH-AS1	-	UGDH antisense RNA 1	ncRNA
159453	chr3	13894571	13896100	+	0	NA	Intergenic	CpG	-15264	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
134327	chr2	136087901	136088500	+	0	NA	Intergenic	LTR12C|LTR|ERV1	28035	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
162461	chr3	48500801	48501800	+	0	NA	intron (NM_001272066, intron 1 of 5)	intron (NM_001272066, intron 1 of 5)	2750	NM_001272068	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
5700	chr1	26372571	26372730	+	0	NA	promoter-TSS (NM_001114759)	promoter-TSS (NM_001114759)	100	NM_001114759	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
204329	chr7	2720071	2720300	+	0	NA	TTS (NM_133463)	TTS (NM_133463)	31983	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
213974	chr7	142798001	142799380	+	0	NA	intron (NM_001130026, intron 10 of 10)	MIRb|SINE|MIR	27720	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
61143	chr13	48655171	48655830	+	0	NA	intron (NM_001308471, intron 1 of 1)	intron (NM_001308471, intron 1 of 1)	1571	NM_001308476	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
192699	chr6	26304601	26306050	+	0	NA	Intergenic	Intergenic	-19791	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
134243	chr2	135047501	135047700	+	0	NA	Intergenic	Intergenic	-4692	NM_001172435	22930		NM_012233	ENSG00000115839	RAB3GAP1	MARTS2|P130|RAB3GAP|RAB3GAP130|WARBM1	RAB3 GTPase activating protein catalytic subunit 1	protein-coding
17235	chr1	156294921	156296380	+	0	NA	promoter-TSS (NM_001256605)	promoter-TSS (NM_001256605)	29	NM_144580	112770		NM_144580	ENSG00000198715	GLMP	C1orf85|NCU-G1|lnc-UCID	glycosylated lysosomal membrane protein	protein-coding
163158	chr3	50160801	50161350	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	2056	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
55874	chr12	109544051	109544150	+	0	NA	Intergenic	Intergenic	29404	NR_038118	326625		NM_052845	ENSG00000139428	MMAB	ATR|CFAP23|cblB|cob	metabolism of cobalamin associated B	protein-coding
48580	chr12	10301021	10301730	+	0	NA	intron (NM_001351060, intron 2 of 8)	LTR26|LTR|ERV1	-3071	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
60839	chr13	45427221	45427580	+	0	NA	Intergenic	LTR48B|LTR|ERV1	-8945	NM_001286806	253512		NM_001010875	ENSG00000174032	SLC25A30	KMCP1	solute carrier family 25 member 30	protein-coding
79736	chr16	1332901	1334000	+	0	NA	promoter-TSS (NM_001286464)	promoter-TSS (NM_001286464)	-195	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
161414	chr3	41243971	41244130	+	0	NA	Intergenic	MIRc|SINE|MIR	44545	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
29896	chr10	73110271	73111130	+	0	NA	intron (NM_001283015, intron 1 of 7)	intron (NM_001283015, intron 1 of 7)	245	NM_001283015	25961		NM_015901	ENSG00000166321	NUDT13	-	nudix hydrolase 13	protein-coding
82158	chr16	14903021	14903900	+	0	NA	Intergenic	L2a|LINE|L2	1952	NR_036140	100422960		NR_036140	ENSG00000284305	MIR3179-1	-	microRNA 3179-1	ncRNA
33285	chr10	114545871	114546430	+	0	NA	intron (NM_001322883, intron 5 of 20)	intron (NM_001322883, intron 5 of 20)	-19237	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
25950	chr10	11483551	11483650	+	0	NA	intron (NM_014688, intron 13 of 14)	intron (NM_014688, intron 13 of 14)	48680	NM_001080491	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
3216	chr1	13765001	13765630	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	15900	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
98534	chr17	47654921	47655180	+	0	NA	intron (NM_002265, intron 3 of 21)	intron (NM_002265, intron 3 of 21)	3985	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
68870	chr14	91312371	91313750	+	0	NA	intron (NM_001080414, intron 15 of 29)	intron (NM_001080414, intron 15 of 29)	-59180	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
225237	chr9	34217471	34217630	+	0	NA	intron (NR_033243, intron 2 of 7)	intron (NR_033243, intron 2 of 7)	38507	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
82851	chr16	21515551	21516530	+	0	NA	Intergenic	Intergenic	4404	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
83331	chr16	24858401	24858700	+	0	NA	intron (NR_147936, intron 2 of 15)	intron (NR_147936, intron 2 of 15)	12319	NM_052944								
16604	chr1	155066151	155067000	+	0	NA	intron (NM_182690, intron 1 of 3)	intron (NM_182690, intron 1 of 3)	-2584	NR_040773	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
137592	chr2	197279301	197279530	+	0	NA	intron (NR_046837, intron 5 of 5)	L2b|LINE|L2	23104	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
41263	chr11	65837551	65838280	+	0	NA	intron (NM_152760, intron 1 of 12)	AluSq2|SINE|Alu	3952	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
226781	chr9	76578901	76579100	+	0	NA	Intergenic	LTR16C|LTR|ERVL	78367	NM_001097636	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
2139	chr1	8358701	8358900	+	0	NA	exon (NM_001042681, exon 20 of 23)	exon (NM_001042681, exon 20 of 23)	40686	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
199442	chr6	117482241	117484380	+	0	NA	intron (NR_158983, intron 1 of 13)	CpG	636	NM_001366458	285761		NM_173674	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
168484	chr3	143192201	143192400	+	0	NA	Intergenic	L2a|LINE|L2	72529	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
80744	chr16	3145601	3146350	+	0	NA	non-coding (NR_132322, exon 5 of 10)	non-coding (NR_132322, exon 5 of 10)	1684	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
195636	chr6	37852701	37853100	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	33173	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
76238	chr15	73972901	73973550	+	0	NA	Intergenic	Intergenic	19070	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
174396	chr4	39180901	39181100	+	0	NA	Intergenic	L1MCa|LINE|L1	-1529	NM_001317924	57728		NM_025132	ENSG00000157796	WDR19	ATD5|CED4|CFAP66|DYF-2|FAP66|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SPGF72|SRTD5	WD repeat domain 19	protein-coding
183501	chr5	79506721	79507180	+	0	NA	intron (NM_001277077, intron 1 of 5)	AluSx4|SINE|Alu	6886	NM_001277077	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
141759	chr2	241966001	241966930	+	0	NA	intron (NR_110220, intron 3 of 3)	L1MEf|LINE|L1	-4218	NR_110592	102723927		NR_110592	ENSG00000237940	LINC01238	-	long intergenic non-protein coding RNA 1238	ncRNA
117175	chr19	19350651	19352700	+	0	NA	intron (NM_015329, intron 16 of 18)	AluJb|SINE|Alu	30846	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
51664	chr12	53058501	53058950	+	0	NA	exon (NM_015319, exon 17 of 29)	exon (NM_015319, exon 17 of 29)	1781	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
90102	chr16	90047501	90048900	+	0	NA	promoter-TSS (NR_027335)	promoter-TSS (NR_027335)	-417	NR_027336	100130015		NR_027335	ENSG00000290738	URAHP	URAH	urate (hydroxyiso-) hydrolase, pseudogene	pseudo
222138	chr8	132478651	132479080	+	0	NA	intron (NM_004519, intron 1 of 14)	intron (NM_004519, intron 1 of 14)	2230	NM_004519	3786		NM_004519	ENSG00000184156	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel subfamily Q member 3	protein-coding
175510	chr4	74157701	74158800	+	0	NA	exon (NM_001351331, exon 1 of 3)	exon (NM_001351331, exon 1 of 3)	132	NM_001004346	441024		NM_001004346	ENSG00000163738	MTHFD2L	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like	protein-coding
93017	chr17	17233301	17234430	+	0	NA	intron (NM_144606, intron 1 of 7)	AluSq2|SINE|Alu	3303	NM_001353231	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
44304	chr11	102349951	102350930	+	0	NA	exon (NM_001256163, exon 2 of 9)	exon (NM_001256163, exon 2 of 9)	3066	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
76989	chr15	78278351	78278650	+	0	NA	intron (NM_018602, intron 6 of 7)	Tigger3a|DNA|TcMar-Tigger	12282	NM_001130183	55466		NM_018602	ENSG00000140403	DNAJA4	MST104|MSTP104|PRO1472	DnaJ heat shock protein family (Hsp40) member A4	protein-coding
199711	chr6	125300901	125302130	+	0	NA	intron (NM_016063, intron 1 of 5)	intron (NM_016063, intron 1 of 5)	452	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
132792	chr2	110204251	110205600	+	0	NA	promoter-TSS (NM_207181)	promoter-TSS (NM_207181)	88	NM_001374256	4867		NM_000272	ENSG00000144061	NPHP1	JBTS4|NPH1|SLSN1	nephrocystin 1	protein-coding
224290	chr9	6427801	6428000	+	0	NA	intron (NR_046386, intron 2 of 16)	intron (NR_046386, intron 2 of 16)	14701	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
111144	chr19	3284071	3286450	+	0	NA	intron (NM_021938, intron 9 of 12)	intron (NM_021938, intron 9 of 12)	59982	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
49361	chr12	22329771	22330330	+	0	NA	intron (NM_001304450, intron 1 of 3)	L2a|LINE|L2	4664	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
77592	chr15	85244801	85245200	+	0	NA	exon (NM_001310153, exon 6 of 11)	exon (NM_001310153, exon 6 of 11)	4649	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
193021	chr6	28354251	28354550	+	0	NA	promoter-TSS (NM_145909)	promoter-TSS (NM_145909)	-196	NM_145909	64288		NM_030899	ENSG00000235109	ZSCAN31	ZNF20-Lp|ZNF310P|ZNF323	zinc finger and SCAN domain containing 31	protein-coding
82026	chr16	12058521	12058980	+	0	NA	intron (NM_032167, intron 8 of 20)	AluSx1|SINE|Alu	82016	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
31893	chr10	100303821	100304080	+	0	NA	intron (NM_016112, intron 2 of 15)	intron (NM_016112, intron 2 of 15)	-17238	NM_001282436	282991		NM_173809	ENSG00000196072	BLOC1S2	BLOS2|BORCS2|CEAP|CEAP11	biogenesis of lysosomal organelles complex 1 subunit 2	protein-coding
175767	chr4	77780701	77781300	+	0	NA	intron (NM_001365006, intron 1 of 11)	L1PA8|LINE|L1	38064	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
137747	chr2	197869501	197870650	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	65482	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
200321	chr6	133875051	133875150	+	0	NA	intron (NR_109982, intron 1 of 8)	AluYh3|SINE|Alu	13906	NR_109982	100507308		NR_109982	ENSG00000227954	TARID	EYA4-AS1	TCF21 antisense RNA inducing promoter demethylation	ncRNA
207749	chr7	48101951	48102450	+	0	NA	intron (NM_001287426, intron 6 of 9)	intron (NM_001287426, intron 6 of 9)	12935	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
52466	chr12	55955751	55956450	+	0	NA	intron (NM_001200054, intron 7 of 10)	intron (NM_001200054, intron 7 of 10)	9942	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
158528	chr3	3176421	3177130	+	0	NA	intron (NM_016302, intron 1 of 10)	intron (NM_016302, intron 1 of 10)	2916	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
31922	chr10	100524321	100524780	+	0	NA	intron (NM_001284367, intron 4 of 4)	intron (NM_001284367, intron 4 of 4)	-4689	NM_015490	25956		NM_015490	ENSG00000075826	SEC31B	SEC31B-1|SEC31L2	SEC31 homolog B, COPII coat complex component	protein-coding
170439	chr3	185902771	185902930	+	0	NA	Intergenic	Intergenic	35164	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
43880	chr11	88340721	88340980	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-3114	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
98115	chr17	45740421	45740750	+	0	NA	intron (NM_001303016, intron 3 of 12)	intron (NM_001303016, intron 3 of 12)	-43695	NM_001303020	1394		NM_004382	ENSG00000120088	CRHR1	CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRHR|CRHR1L	corticotropin releasing hormone receptor 1	protein-coding
167590	chr3	129559951	129560500	+	0	NA	intron (NM_015103, intron 31 of 35)	intron (NM_015103, intron 31 of 35)	11840	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
103842	chr17	79639221	79639300	+	0	NA	Intergenic	AluY|SINE|Alu	-28209	NM_001350451	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
206159	chr7	27972171	27972880	+	0	NA	intron (NM_175061, intron 2 of 4)	L2a|LINE|L2	-207932	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
148657	chr21	6114801	6115130	+	0	NA	intron (NM_173354, intron 3 of 13).2	AluSz|SINE|Alu	3834	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
136157	chr2	174340121	174340850	+	0	NA	Intergenic	CpG	5531	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
165369	chr3	93177021	93177280	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	796746	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
194947	chr6	35263371	35264530	+	0	NA	intron (NM_003427, intron 1 of 13)	AluSx1|SINE|Alu	4215	NM_001292032	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
186922	chr5	139609721	139609980	+	0	NA	intron (NM_003339, intron 2 of 6)	AluSx3|SINE|Alu	-37449	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
211994	chr7	114081851	114082330	+	0	NA	Intergenic	Intergenic	-4237	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
56095	chr12	110697971	110698930	+	0	NA	Intergenic	Intergenic	-8673	NM_001256413	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
20106	chr1	191242351	191242450	+	0	NA	Intergenic	AluYf1|SINE|Alu	-13902	NR_146892	105371660		NR_146892	ENSG00000233882	LINC01680	-	long intergenic non-protein coding RNA 1680	ncRNA
125807	chr2	24052151	24052450	+	0	NA	intron (NM_054033, intron 1 of 3)	L2a|LINE|L2	2559	NR_136536	2281		NM_004116	ENSG00000119782	FKBP1B	FKBP12.6|FKBP1L|OTK4|PKBP1L|PPIase	FKBP prolyl isomerase 1B	protein-coding
32431	chr10	102502701	102503200	+	0	NA	promoter-TSS (NM_005736)	promoter-TSS (NM_005736)	-238	NM_005736	10121		NM_005736	ENSG00000138107	ACTR1A	ARP1|Arp1A|CTRN1	actin related protein 1A	protein-coding
63570	chr14	20429651	20430330	+	0	NA	exon (NM_001109997, exon 2 of 4)	exon (NM_001109997, exon 2 of 4)	5840	NM_001109997	123103		NM_001109997	ENSG00000185271	KLHL33	-	kelch like family member 33	protein-coding
114873	chr19	13874951	13875250	+	0	NA	TTS (NR_029613)	TTS (NR_029613)	225	NR_030179	574457		NR_030179	ENSG00000207585	MIR181D	MIRN181D|mir-181d	microRNA 181d	ncRNA
93834	chr17	20944221	20944550	+	0	NA	intron (NR_160712, intron 1 of 3)	L1M1|LINE|L1	5819	NR_160722	339260		NR_123730	ENSG00000233098	LOC339260	-	uncharacterized LOC339260	ncRNA
92354	chr17	8184251	8184350	+	0	NA	Intergenic	Intergenic	-2645	NR_039746	100616406		NR_039746	ENSG00000283160	MIR4521	mir-4521	microRNA 4521	ncRNA
77261	chr15	81322751	81323100	+	0	NA	exon (NM_181900, exon 2 of 6)	exon (NM_181900, exon 2 of 6)	1216	NR_135013	80765		NM_030574	ENSG00000172345	STARD5	-	StAR related lipid transfer domain containing 5	protein-coding
197481	chr6	75598721	75599750	+	0	NA	Intergenic	AluJb|SINE|Alu	-2274	NM_001304792	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
113926	chr19	10719801	10720530	+	0	NA	intron (NM_001005362, intron 1 of 19)	MIRc|SINE|MIR	1761	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
153639	chr22	28780951	28781600	+	0	NA	intron (NM_173510, intron 3 of 4)	intron (NM_173510, intron 3 of 4)	8138	NM_001284265	150275		NM_173510	ENSG00000159873	CCDC117	dJ366L4.1	coiled-coil domain containing 117	protein-coding
148907	chr21	8810921	8811380	+	0	NA	Intergenic	ACRO1|Satellite|acro	-175849	NR_037421	100500862		NR_037421	ENSG00000275708	MIR3648-1	MIR3648|hsa-mir-3648-1	microRNA 3648-1	ncRNA
134821	chr2	148540001	148540650	+	0	NA	Intergenic	Intergenic	-104426	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
86420	chr16	66871071	66871430	+	0	NA	Intergenic	AluSc8|SINE|Alu	-9265	NM_001329931	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
62784	chr13	108818721	108818800	+	0	NA	intron (NM_015011, intron 7 of 34)	intron (NM_015011, intron 7 of 34)	189149	NM_001198950	23026		NM_015011	ENSG00000041515	MYO16	MYAP3|MYR8|Myo16b|NYAP3|PPP1R107	myosin XVI	protein-coding
221691	chr8	126566951	126567430	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-8712	NR_156466	157638		NM_174911	ENSG00000168672	LRATD2	BCMP101|FAM84B|NSE2	LRAT domain containing 2	protein-coding
122409	chr19	49442711	49444350	+	0	NA	Intergenic	CpG	-2003	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
229152	chr9	114493021	114493400	+	0	NA	intron (NM_015404, intron 1 of 11)	AluJo|SINE|Alu	10005	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
56060	chr12	110564751	110565050	+	0	NA	intron (NM_139283, intron 1 of 5)	AluSq2|SINE|Alu	18418	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
225169	chr9	33843551	33843650	+	0	NA	intron (NM_017811, intron 1 of 4)	AluSz|SINE|Alu	26440	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
164465	chr3	59809801	59810130	+	0	NA	intron (NM_001354590, intron 7 of 8)	intron (NM_001354590, intron 7 of 8)	-151468	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
110077	chr19	1506421	1507000	+	0	NA	intron (NM_001367197, intron 11 of 12)	intron (NM_001367197, intron 11 of 12)	6309	NM_001367197	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
239423	chrY	56682451	56682550	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-271755	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
165063	chr3	71454871	71455580	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	86864	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
151930	chr22	19036701	19037200	+	0	NA	non-coding (NR_033674, exon 9 of 9)	non-coding (NR_033674, exon 9 of 9)	11425	NR_024157	25786		NR_024157	ENSG00000273311	DGCR11	DGS-D	DiGeorge syndrome critical region gene 11	ncRNA
89163	chr16	88537021	88538080	+	0	NA	TTS (NM_153813)	TTS (NM_153813)	-6497	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
63621	chr14	20632401	20633650	+	0	NA	Intergenic	tRNA-Pro-CCA|tRNA|tRNA	8666	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
211129	chr7	102534171	102534330	+	0	NA	Intergenic	AluSz|SINE|Alu	10538	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
18141	chr1	160749551	160749650	+	0	NA	intron (NM_001282588, intron 2 of 3)	(TTA)n|Simple_repeat|Simple_repeat	10353	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
172435	chr4	1870021	1872000	+	0	NA	promoter-TSS (NM_001042424)	promoter-TSS (NM_001042424)	-383	NM_001042424	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
40816	chr11	64922921	64923180	+	0	NA	Intergenic	AluJr|SINE|Alu	-1639	NM_006244	5526		NM_006244	ENSG00000068971	PPP2R5B	B56B|B56beta|PR61B	protein phosphatase 2 regulatory subunit B'beta	protein-coding
70517	chr14	102313951	102315050	+	0	NA	Intergenic	L2a|LINE|L2	-3006	NM_001385074	55778		NM_018335	ENSG00000022976	ZNF839	C14orf131	zinc finger protein 839	protein-coding
8676	chr1	41902621	41903330	+	0	NA	intron (NR_038260, intron 1 of 2)	intron (NR_038260, intron 1 of 2)	15947	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
219471	chr8	73356321	73356650	+	0	NA	promoter-TSS (NR_125388)	promoter-TSS (NR_125388)	-24	NR_125388	101926926		NR_125388	ENSG00000250295	RDH10-AS1	-	RDH10 antisense RNA 1	ncRNA
33496	chr10	119123351	119123650	+	0	NA	exon (NM_001303111, exon 7 of 10)	exon (NM_001303111, exon 7 of 10)	19387	NM_001303111	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
36758	chr11	9383421	9383680	+	0	NA	Intergenic	AluY|SINE|Alu	-1102	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
169352	chr3	160400601	160401050	+	0	NA	5' UTR (NM_001288753, exon 2 of 24)	5' UTR (NM_001288753, exon 2 of 24)	266	NM_005496	10051		NM_005496	ENSG00000113810	SMC4	CAP-C|CAPC|SMC-4|SMC4L1	structural maintenance of chromosomes 4	protein-coding
85267	chr16	48555771	48556400	+	0	NA	intron (NM_153029, intron 2 of 6)	intron (NM_153029, intron 2 of 6)	54095	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
18848	chr1	167712971	167713700	+	0	NA	Intergenic	Intergenic	-8647	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
192970	chr6	27874751	27875050	+	0	NA	Intergenic	Intergenic	-1366	NM_003546	8368		NM_003546	ENSG00000275126	H4C13	H4-16|H4.k|H4/k|H4C1|H4C11|H4C12|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4FK|HIST1H4L	H4 clustered histone 13	protein-coding
188728	chr5	157431671	157432250	+	0	NA	intron (NR_136204, intron 1 of 3)	Tigger2|DNA|TcMar-Tigger	-28059	NM_001172292	348938		NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN|NIPA4|SLC57A6	NIPA like domain containing 4	protein-coding
125586	chr2	16656951	16657250	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	8734	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
186044	chr5	134046871	134047230	+	0	NA	Intergenic	Intergenic	-42075	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
231432	chr9	131241951	131242330	+	0	NA	Intergenic	AluJb|SINE|Alu	34370	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
227272	chr9	89376651	89377180	+	0	NA	TTS (NM_006378)	TTS (NM_006378)	58064	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
2102	chr1	8014821	8015430	+	0	NA	intron (NM_018948, intron 3 of 3)	intron (NM_018948, intron 3 of 3)	11184	NM_018948	54206		NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
141931	chr20	1222671	1222930	+	0	NA	Intergenic	L1PA5|LINE|L1	-3244	NM_001384357	642636		NM_001136566	ENSG00000244588	RAD21L1	RAD21L|dJ545L17.2	RAD21 cohesin complex component like 1	protein-coding
120405	chr19	43777151	43778800	+	0	NA	intron (NM_002250, intron 1 of 8)	intron (NM_002250, intron 1 of 8)	2998	NM_002250	3783		NM_002250	ENSG00000104783	KCNN4	DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium calcium-activated channel subfamily N member 4	protein-coding
39776	chr11	61918471	61918850	+	0	NA	intron (NM_001271686, intron 1 of 8)	intron (NM_001271686, intron 1 of 8)	-1094	NM_013401	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
107623	chr18	48936871	48938230	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	5257	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
162338	chr3	47780121	47782930	+	0	NA	intron (NM_003074, intron 1 of 27)	CpG	368	NM_003074	6599		NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|HYC5|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
119255	chr19	39504801	39505000	+	0	NA	intron (NM_016941, intron 5 of 7)	L2c|LINE|L2	5953	NM_203486	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
17313	chr1	156459051	156459150	+	0	NA	Intergenic	AluSx3|SINE|Alu	-29552	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
65418	chr14	50830301	50832230	+	0	NA	promoter-TSS (NM_182944)	promoter-TSS (NM_182944)	-103	NM_020921	51199		NM_016350	ENSG00000100503	NIN	SCKL7	ninein	protein-coding
91605	chr17	5308101	5308300	+	0	NA	intron (NM_001291581, intron 1 of 16)	intron (NM_001291581, intron 1 of 16)	25916	NM_001083585	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
174368	chr4	38865501	38865700	+	0	NA	Intergenic	Intergenic	-2206	NM_001330764	92689		NM_138389	ENSG00000197712	FAM114A1	Noxp20	family with sequence similarity 114 member A1	protein-coding
45995	chr11	121514271	121515230	+	0	NA	intron (NM_003105, intron 8 of 47)	intron (NM_003105, intron 8 of 47)	-32961	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
92633	chr17	10119151	10120090	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	78986	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
164572	chr3	64015321	64016130	+	0	NA	intron (NM_014814, intron 5 of 7)	intron (NM_014814, intron 5 of 7)	7747	NM_001271781	9861		NM_014814	ENSG00000163636	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	proteasome 26S subunit, non-ATPase 6	protein-coding
143700	chr20	32203001	32203200	+	0	NA	intron (NM_002657, intron 1 of 2)	intron (NM_002657, intron 1 of 2)	4643	NM_002657	5326		NM_002657	ENSG00000126003	PLAGL2	ZNF900	PLAG1 like zinc finger 2	protein-coding
57756	chr12	122976471	122977000	+	0	NA	exon (NM_001304833, exon 3 of 7)	exon (NM_001304833, exon 3 of 7)	1532	NM_001304833	79676		NM_024623	ENSG00000111325	OGFOD2	-	2-oxoglutarate and iron dependent oxygenase domain containing 2	protein-coding
53554	chr12	67545321	67545630	+	0	NA	intron (NR_103861, intron 1 of 2)	intron (NR_103861, intron 1 of 2)	25393	NR_103861	100507175		NR_103861	ENSG00000203585	LINC02408	-	long intergenic non-protein coding RNA 2408	ncRNA
210274	chr7	99414501	99414750	+	0	NA	intron (NM_001370410, intron 3 of 5)	AluSz|SINE|Alu	5453	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
107724	chr18	49821451	49821750	+	0	NA	intron (NR_117096, intron 1 of 3)	intron (NR_117096, intron 1 of 3)	7577	NR_117096	103091864		NR_117096	ENSG00000267322	SNHG22	SCARNA17|SCARNA17HG	small nucleolar RNA host gene 22	ncRNA
202576	chr6	158685801	158686000	+	0	NA	intron (NM_001318745, intron 3 of 14)	intron (NM_001318745, intron 3 of 14)	22497	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
153701	chr22	29271571	29271730	+	0	NA	intron (NM_001163286, intron 1 of 15)	intron (NM_001163286, intron 1 of 15)	3382	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
45960	chr11	121445421	121446030	+	0	NA	Intergenic	Intergenic	-6589	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
178191	chr4	142399001	142401050	+	0	NA	intron (NM_001385379, intron 2 of 21)	intron (NM_001385379, intron 2 of 21)	3108	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
53042	chr12	57616921	57617180	+	0	NA	non-coding (NR_046223, exon 16 of 16)	non-coding (NR_046223, exon 16 of 16)	-2477	NR_166678	65012		NM_133489	ENSG00000293429	SLC26A10P	SLC26A10	solute carrier family 26 member 10, pseudogene	pseudo
179203	chr4	173372851	173373380	+	0	NA	intron (NM_003864, intron 1 of 3)	intron (NM_003864, intron 1 of 3)	2161	NM_003864	8819		NM_003864	ENSG00000164105	SAP30	-	Sin3A associated protein 30	protein-coding
21253	chr1	204380201	204380400	+	0	NA	Intergenic	Intergenic	-10581	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
68360	chr14	77716771	77717900	+	0	NA	TTS (NM_012245)	TTS (NM_012245)	9232	NM_031210	81892		NM_031210	ENSG00000119705	SLIRP	C14orf156|DC50|PD04872	SRA stem-loop interacting RNA binding protein	protein-coding
17126	chr1	156171421	156171680	+	0	NA	intron (NM_001370567, intron 9 of 13)	L2b|LINE|L2	17002	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
238921	chrX	154733971	154734850	+	0	NA	intron (NR_104114, intron 1 of 8)	intron (NR_104114, intron 1 of 8)	16667	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
152015	chr22	19424151	19424530	+	0	NA	intron (NM_003325, intron 1 of 24)	intron (NM_003325, intron 1 of 24)	7393	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
147634	chr20	62155951	62156250	+	0	NA	intron (NM_001301778, intron 2 of 11)	intron (NM_001301778, intron 2 of 11)	12331	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
239231	chrY	12946701	12946980	+	0	NA	Intergenic	Intergenic	41135	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
112095	chr19	5565521	5566030	+	0	NA	intron (NR_027064, intron 1 of 2)	intron (NR_027064, intron 1 of 2)	2259	NR_027064								
148422	chr20	63959671	63959830	+	0	NA	3' UTR (NM_020713, exon 17 of 17)	3' UTR (NM_020713, exon 17 of 17)	-3334	NM_001353477	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
154884	chr22	37146001	37146400	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	3716	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
25234	chr10	5975451	5976600	+	0	NA	intron (NM_001256765, intron 1 of 7)	intron (NM_001256765, intron 1 of 7)	1518	NM_172200	3601		NM_002189	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor subunit alpha	protein-coding
4908	chr1	23836471	23836900	+	0	NA	Intergenic	L1MB4|LINE|L1	-11226	NM_001166059	3155		NM_000191	ENSG00000117305	HMGCL	HL|HMGCL1	3-hydroxy-3-methylglutaryl-CoA lyase	protein-coding
110393	chr19	1940011	1941600	+	0	NA	promoter-TSS (NM_001319)	promoter-TSS (NM_001319)	-367	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
150313	chr21	42005471	42005630	+	0	NA	intron (NM_001320731, intron 1 of 3)	intron (NM_001320731, intron 1 of 3)	-3644	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
227129	chr9	86258751	86259050	+	0	NA	intron (NM_001276367, intron 1 of 4)	L1MC2|LINE|L1	757	NM_001276366	389766		NM_001010907	ENSG00000187753	C9orf153	bA507D14.1	chromosome 9 open reading frame 153	protein-coding
218973	chr8	61706251	61706550	+	0	NA	intron (NM_032466, intron 1 of 13)	AluJb|SINE|Alu	8192	NM_004318	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
167023	chr3	126356271	126356730	+	0	NA	intron (NM_014079, intron 1 of 2)	CpG	908	NM_014079	28999		NM_014079	ENSG00000163884	KLF15	KKLF	KLF transcription factor 15	protein-coding
68395	chr14	80942401	80942780	+	0	NA	promoter-TSS (NM_152446)	promoter-TSS (NM_152446)	-852	NM_152446	145508		NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding
39572	chr11	61136021	61136280	+	0	NA	intron (NM_017966, intron 2 of 4)	L1MA4A|LINE|L1	25276	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
105663	chr18	2594151	2594450	+	0	NA	intron (NM_006101, intron 10 of 16)	intron (NM_006101, intron 10 of 16)	22743	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
90094	chr16	90034151	90034250	+	0	NA	intron (NM_001286208, intron 4 of 9)	intron (NM_001286208, intron 4 of 9)	-4299	NR_122031	750		NM_001214	ENSG00000221819	GAS8-AS1	C16orf3	GAS8 antisense RNA 1	ncRNA
186407	chr5	135426051	135426380	+	0	NA	Intergenic	Intergenic	21133	NM_130848	140947		NM_130848	ENSG00000251380	DCANP1	C5orf20|DCNP1	dendritic cell associated nuclear protein 1	protein-coding
211272	chr7	102713271	102713980	+	0	NA	intron (NR_146066, intron 1 of 11)	intron (NR_146066, intron 1 of 11)	35069	NR_146066	100133005		NR_146066		RASA4DP	-	RAS p21 protein activator 4D, pseudogene	pseudo
76055	chr15	72316871	72317230	+	0	NA	intron (NM_052840, intron 1 of 12)	L2b|LINE|L2	2896	NM_001172684	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
125782	chr2	23787951	23788780	+	0	NA	intron (NM_001354107, intron 21 of 28)	intron (NM_001354107, intron 21 of 28)	138758	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
42011	chr11	67408711	67410480	+	0	NA	exon (NM_198517, exon 10 of 10)	exon (NM_198517, exon 10 of 10)	5512	NM_001369496	374403		NM_198517	ENSG00000175463	TBC1D10C	CARABIN|EPI64C	TBC1 domain family member 10C	protein-coding
74683	chr15	62066401	62067160	+	0	NA	promoter-TSS (NM_207322)	promoter-TSS (NM_207322)	-197	NM_207322	145741		NM_207322	ENSG00000198535	C2CD4A	FAM148A|NLF1	C2 calcium dependent domain containing 4A	protein-coding
122224	chr19	48983321	48984080	+	0	NA	intron (NM_002103, intron 5 of 15)	intron (NM_002103, intron 5 of 15)	9609	NR_027763	2997		NM_002103	ENSG00000104812	GYS1	GSY|GYS	glycogen synthase 1	protein-coding
116639	chr19	18310901	18311330	+	0	NA	intron (NM_001252129, intron 2 of 3)	intron (NM_001252129, intron 2 of 3)	11961	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
1664	chr1	3892071	3892680	+	0	NA	intron (NM_207356, intron 2 of 3)	CpG	7897	NM_207356	339448		NM_207356	ENSG00000198912	C1orf174	-	chromosome 1 open reading frame 174	protein-coding
156926	chr22	42297721	42298280	+	0	NA	Intergenic	MIRc|SINE|MIR	-14073	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
25452	chr10	6600121	6600750	+	0	NA	Intergenic	Intergenic	-18281	NR_120634	101928150		NR_120634		LINC02648	-	long intergenic non-protein coding RNA 2648	ncRNA
93140	chr17	17739901	17740100	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	26302	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
8070	chr1	38994351	38995180	+	0	NA	intron (NM_001136275, intron 1 of 3)	AluSq|SINE|Alu	3489	NM_024595	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
57552	chr12	122203121	122204950	+	0	NA	TTS (NM_001098519)	TTS (NM_001098519)	326	NM_030765	79369		NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
115211	chr19	14482301	14482500	+	0	NA	intron (NM_202494, intron 1 of 5)	intron (NM_202494, intron 1 of 5)	-7046	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
155291	chr22	38111771	38111930	+	0	NA	3' UTR (NM_001349868, exon 16 of 16)	3' UTR (NM_001349868, exon 16 of 16)	-1166	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
163483	chr3	50674251	50675600	+	0	NA	promoter-TSS (NR_039950)	promoter-TSS (NR_039950)	-2	NM_004947	1795		NM_004947	ENSG00000088538	DOCK3	MOCA|NEDIDHA|PBP	dedicator of cytokinesis 3	protein-coding
67936	chr14	74766601	74767330	+	0	NA	intron (NM_019589, intron 1 of 20)	AluSg|SINE|Alu	3649	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
222027	chr8	130151301	130151700	+	0	NA	intron (NM_001362924, intron 14 of 30)	intron (NM_001362924, intron 14 of 30)	-66732	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
220245	chr8	97553501	97553830	+	0	NA	Intergenic	Intergenic	-90519	NM_178812	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
164776	chr3	69160521	69161080	+	0	NA	Intergenic	MER96B|DNA|hAT-Tip100	-38205	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
159188	chr3	12839201	12839600	+	0	NA	TTS (NR_002582)	TTS (NR_002582)	1050	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
147733	chr20	62394221	62394750	+	0	NA	intron (NM_031215, intron 4 of 9)	intron (NM_031215, intron 4 of 9)	7382	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
55364	chr12	104276321	104276580	+	0	NA	intron (NM_001093771, intron 3 of 16)	MER63A|DNA|hAT-Blackjack	-10582	NM_182729	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
226302	chr9	68584351	68585000	+	0	NA	Intergenic	Intergenic	-38073	NR_109769	101927015		NR_109769		LINC01506	-	long intergenic non-protein coding RNA 1506	ncRNA
94994	chr17	32354921	32355680	+	0	NA	intron (NM_001098507, intron 2 of 11)	AluJb|SINE|Alu	5143	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
132568	chr2	106488251	106488680	+	0	NA	intron (NM_001349727, intron 1 of 5)	intron (NM_001349727, intron 1 of 5)	1101	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
166474	chr3	114238451	114238550	+	0	NA	promoter-TSS (NM_007136)	promoter-TSS (NM_007136)	-922	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
202772	chr6	159060251	159060550	+	0	NA	Intergenic	Intergenic	-15248	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
228771	chr9	110255581	110257880	+	0	NA	promoter-TSS (NM_001244938)	promoter-TSS (NM_001244938)	-223	NM_001244938	7295		NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1|TXN1|Trx80	thioredoxin	protein-coding
49669	chr12	29389371	29389800	+	0	NA	non-coding (NR_073170, exon 1 of 3)	non-coding (NR_073170, exon 1 of 3)	291	NR_073170	101055625		NR_073170	ENSG00000257599	OVCH1-AS1	-	OVCH1 antisense RNA 1	ncRNA
57044	chr12	120830071	120830980	+	0	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	73833	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
46028	chr11	122659601	122660200	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	4178	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
95456	chr17	36174071	36174230	+	0	NA	intron (NM_001001417, intron 3 of 13).3	intron (NM_001001417, intron 3 of 13).3	2428	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
209309	chr7	76047301	76049200	+	0	NA	promoter-TSS (NM_001317786)	promoter-TSS (NM_001317786)	144	NM_001282403	4191		NM_005918	ENSG00000146701	MDH2	DEE51|EIEE51|M-MDH|MDH|MGC:3559|MOR1	malate dehydrogenase 2	protein-coding
230434	chr9	128154971	128155500	+	0	NA	Intergenic	LTR28C|LTR|ERV1	-5030	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
139307	chr2	219528351	219529000	+	0	NA	intron (NM_182847, intron 1 of 8)	AluSx1|SINE|Alu	14193	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
170876	chr3	192899811	192900250	+	0	NA	intron (NM_178496, intron 1 of 1)	AluY|SINE|Alu	17826	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
105764	chr18	2782471	2782630	+	0	NA	intron (NM_015295, intron 44 of 47)	AluJr|SINE|Alu	-64456	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
145290	chr20	41034051	41035230	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	5818	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
166102	chr3	110626421	110627230	+	0	NA	Intergenic	Intergenic	443134	NR_045114	100506555		NR_045114		NECTIN3-AS1	PVRL3-AS1	NECTIN3 antisense RNA 1	ncRNA
191823	chr6	14743971	14744230	+	0	NA	Intergenic	Intergenic	-458646	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
95305	chr17	35554851	35555230	+	0	NA	non-coding (NR_138031, exon 2 of 2)	non-coding (NR_138031, exon 2 of 2)	1835	NR_138032	107985033		NR_138031		LOC107985033	-	uncharacterized LOC107985033	ncRNA
34528	chr10	132787321	132787850	+	0	NA	Intergenic	CpG-3593	-1438	NM_177400	84504		NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B|SPAX8	NK6 homeobox 2	protein-coding
222249	chr8	133209251	133210080	+	0	NA	intron (NM_001204870, intron 1 of 1)	intron (NM_001204870, intron 1 of 1)	18626	NM_080838	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
81278	chr16	4651701	4652450	+	0	NA	intron (NM_001142291, intron 3 of 15)	intron (NM_001142291, intron 3 of 15)	-19243	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
75913	chr15	70088801	70089530	+	0	NA	intron (NM_001282982, intron 2 of 17)	L2c|LINE|L2	5624	NM_001282982	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
118372	chr19	35715701	35716400	+	0	NA	intron (NM_014383, intron 5 of 6)	intron (NM_014383, intron 5 of 6)	-1953	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
49003	chr12	14215921	14217180	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-149082	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
54900	chr12	96033601	96034050	+	0	NA	intron (NM_001256644, intron 1 of 17)	intron (NM_001256644, intron 1 of 17)	1762	NM_000895	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
210992	chr7	102279401	102280150	+	0	NA	intron (NM_001913, intron 18 of 22)	intron (NM_001913, intron 18 of 22)	-5366	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
98476	chr17	47190671	47191850	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-1965	NM_001353049	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
121175	chr19	46471221	46471680	+	0	NA	5' UTR (NM_018215, exon 1 of 3)	5' UTR (NM_018215, exon 1 of 3)	113	NM_001103149	55228		NM_018215	ENSG00000182013	PNMA8A	PNMAL1	PNMA family member 8A	protein-coding
124456	chr19	58516601	58516800	+	0	NA	exon (NM_001316978, exon 2 of 3)	exon (NM_001316978, exon 2 of 3)	2902	NM_001316978	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
59567	chr13	27423401	27423600	+	0	NA	Intergenic	Intergenic	-1119	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
132596	chr2	108447651	108447750	+	0	NA	Intergenic	Intergenic	-1506	NM_181453	9648		NM_181453	ENSG00000135968	GCC2	GCC185|RANBP2L4|REN53	GRIP and coiled-coil domain containing 2	protein-coding
209003	chr7	74271671	74272150	+	0	NA	Intergenic	FRAM|SINE|Alu	-17452	NM_002914	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
195755	chr6	40371371	40371730	+	0	NA	Intergenic	L1MA9|LINE|L1	-6787	NR_160960	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
130410	chr2	85338871	85339030	+	0	NA	Intergenic	Intergenic	-10961	NM_001368095	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
116701	chr19	18434921	18435980	+	0	NA	TTS (NM_001009998)	TTS (NM_001009998)	1859	NM_001253389	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
77796	chr15	87736801	87737400	+	0	NA	Intergenic	Intergenic	160171	NR_026869	145978		NM_152454	ENSG00000259527	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
73594	chr15	44542421	44542680	+	0	NA	intron (NM_001284336, intron 2 of 5)	intron (NM_001284336, intron 2 of 5)	5403	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
126754	chr2	30237471	30238030	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	6216	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
27836	chr10	38396671	38396830	+	0	NA	intron (NR_148868, intron 1 of 2)	intron (NR_148868, intron 1 of 2)	6177	NR_027269	285961		NR_027269	ENSG00000291056	SEPTIN7P9	CDC10L|SEPT7L|SEPT7P9|bA291L22.2	septin 7 pseudogene 9	pseudo
96162	chr17	39700051	39701130	+	0	NA	intron (NM_001382804, intron 1 of 20)	CpG	526	NM_004448	2064		NM_004448	ENSG00000141736	ERBB2	CD340|HER-2|HER-2/neu|HER2|MLN 19|MLN-19|NEU|NGL|TKR1|VSCN2|c-ERB-2|c-ERB2|p185(erbB2)	erb-b2 receptor tyrosine kinase 2	protein-coding
7460	chr1	33086051	33086880	+	0	NA	intron (NM_001376724, intron 3 of 9)	intron (NM_001376724, intron 3 of 9)	4287	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
219519	chr8	74344651	74344950	+	0	NA	Intergenic	Intergenic	-5583	NM_001362929	54332		NM_018972	ENSG00000104381	GDAP1	CMT4|CMT4A|CMTRIA	ganglioside induced differentiation associated protein 1	protein-coding
127144	chr2	37683171	37683330	+	0	NA	Intergenic	Intergenic	-10301	NM_001371569	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
80783	chr16	3213521	3214050	+	0	NA	Intergenic	Intergenic	-1777	NR_002169	26184		NR_002169	ENSG00000203581	OR1F2P	OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91	olfactory receptor family 1 subfamily F member 2 pseudogene	pseudo
199832	chr6	127743651	127743950	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	111388	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
160741	chr3	32471221	32471680	+	0	NA	Intergenic	Intergenic	31402	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
167329	chr3	128741671	128742430	+	0	NA	intron (NM_004637, intron 1 of 5)	LTR12C|LTR|ERV1	15867	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
227994	chr9	95503221	95503480	+	0	NA	intron (NM_001354919, intron 2 of 4)	intron (NM_001354919, intron 2 of 4)	3849	NM_001083607	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
22008	chr1	209815571	209816100	+	0	NA	Intergenic	MIRb|SINE|MIR	-9660	NM_001206696	3664		NM_006147	ENSG00000117595	IRF6	LPS|OFC6|PIT|PPS|PPS1|VWS|VWS1	interferon regulatory factor 6	protein-coding
63329	chr13	114014251	114014550	+	0	NA	intron (NM_001320822, intron 14 of 23).2	intron (NM_001320822, intron 14 of 23).2	-40324	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
110099	chr19	1543621	1544900	+	0	NA	Intergenic	AluSg|SINE|Alu	20183	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
150019	chr21	37225221	37226380	+	0	NA	intron (NM_006052, intron 7 of 7)	intron (NM_006052, intron 7 of 7)	17297	NR_026719	257203		NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9	ncRNA
126903	chr2	32377871	32378230	+	0	NA	intron (NM_016252, intron 2 of 73)	intron (NM_016252, intron 2 of 73)	20834	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
144169	chr20	34081521	34082650	+	0	NA	3' UTR (NM_007367, exon 9 of 9)	3' UTR (NM_007367, exon 9 of 9)	30158	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
775	chr1	1528201	1528600	+	0	NA	intron (NM_018188, intron 14 of 15)	intron (NM_018188, intron 14 of 15)	12224	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
28472	chr10	49442751	49443200	+	0	NA	3' UTR (NM_001346440, exon 21 of 21)	3' UTR (NM_001346440, exon 21 of 21)	-46886	NM_001276451	644168		NM_001080520	ENSG00000165606	DRGX	DRG11|PRRXL1	dorsal root ganglia homeobox	protein-coding
80128	chr16	2056171	2056530	+	0	NA	intron (NM_001370404, intron 7 of 40)	MIRb|SINE|MIR	8148	NM_001318832	7249		NM_000548	ENSG00000103197	TSC2	LAM|PPP1R160|TSC4	TSC complex subunit 2	protein-coding
192858	chr6	27205851	27206210	+	0	NA	Intergenic	Intergenic	-41671	NM_005865	10279		NM_005865	ENSG00000112812	PRSS16	TSSP	serine protease 16	protein-coding
215381	chr7	157430221	157430480	+	0	NA	Intergenic	(TCCA)n|Simple_repeat|Simple_repeat	-35881	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
50000	chr12	42241201	42241800	+	0	NA	Intergenic	Intergenic	-3132	NM_001320080	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
87885	chr16	78503551	78503750	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	403996	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19295	chr1	172874951	172875250	+	0	NA	Intergenic	Intergenic	175841	NM_005092	8995		NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	TNF superfamily member 18	protein-coding
147116	chr20	53939851	53940250	+	0	NA	Intergenic	Intergenic	-64341	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
67307	chr14	69603401	69604050	+	0	NA	Intergenic	Intergenic	-7871	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
177727	chr4	122309551	122309650	+	0	NA	intron (NM_001384125, intron 59 of 87)	intron (NM_001384125, intron 59 of 87)	-69411	NM_139243	132612		NM_139243	ENSG00000164113	ADAD1	Tenr	adenosine deaminase domain containing 1	protein-coding
174841	chr4	48483051	48483850	+	0	NA	5' UTR (NM_152679, exon 1 of 3)	5' UTR (NM_152679, exon 1 of 3)	107	NM_152679	201780		NM_152679	ENSG00000145248	SLC10A4	P4	solute carrier family 10 member 4	protein-coding
61184	chr13	49219901	49220950	+	0	NA	promoter-TSS (NM_001507)	promoter-TSS (NM_001507)	87	NM_001507	2862		NM_001507	ENSG00000102539	MLNR	GPR38|MTLR1	motilin receptor	protein-coding
110142	chr19	1612101	1612300	+	0	NA	intron (NM_003200, intron 18 of 18)	intron (NM_003200, intron 18 of 18)	-6738	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
217691	chr8	30120521	30121050	+	0	NA	intron (NM_001128208, intron 3 of 3)	AluJb|SINE|Alu	23880	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
72300	chr15	31131051	31131350	+	0	NA	intron (NM_001252020, intron 1 of 26).2	MER44C|DNA|TcMar-Tigger	-29475	NM_002420	4308		NM_002420	ENSG00000134160	TRPM1	CSNB1C|LTRPC1|MLSN1	transient receptor potential cation channel subfamily M member 1	protein-coding
126653	chr2	28958351	28959120	+	0	NA	Intergenic	Intergenic	-22563	NM_199280	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
146888	chr20	51517951	51518250	+	0	NA	intron (NM_173091, intron 2 of 9)	intron (NM_173091, intron 2 of 9)	24619	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
35500	chr11	1525821	1526080	+	0	NA	Intergenic	AluSq|SINE|Alu	-39171	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
168275	chr3	141485271	141486300	+	0	NA	Intergenic	Intergenic	-1242	NM_001303246	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
14698	chr1	145921751	145922300	+	0	NA	3' UTR (NM_005105, exon 6 of 6)	3' UTR (NM_005105, exon 6 of 6)	2681	NR_104033	114814		NM_057163	ENSG00000293505	GNRHR2	GNRHR2P|GnRH-II-R	gonadotropin releasing hormone receptor 2 (pseudogene)	pseudo
135539	chr2	162317901	162319210	+	0	NA	promoter-TSS (NM_001330268)	promoter-TSS (NM_001330268)	129	NM_022168	64135		NM_022168	ENSG00000115267	IFIH1	AGS7|Hlcd|IDDM19|IMD95|MDA-5|MDA5|RLR-2|SGMRT1	interferon induced with helicase C domain 1	protein-coding
97832	chr17	44913201	44913400	+	0	NA	exon (NM_002055, exon 4 of 9)	exon (NM_002055, exon 4 of 9)	2200	NM_001131019	2670		NM_002055	ENSG00000131095	GFAP	ALXDRD	glial fibrillary acidic protein	protein-coding
80821	chr16	3470101	3470300	+	0	NA	intron (NM_001317095, intron 1 of 5)	intron (NM_001317095, intron 1 of 5)	12155	NM_001317097	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
55928	chr12	109881901	109882500	+	0	NA	Intergenic	L2a|LINE|L2	-1659	NM_016433	51228		NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
205537	chr7	19707171	19707680	+	0	NA	intron (NM_001002926, intron 1 of 3)	intron (NM_001002926, intron 1 of 3)	1612	NM_001002926	221830		NM_001002926	ENSG00000105849	POLR1F	A43|RPA43|TWISTNB	RNA polymerase I subunit F	protein-coding
26166	chr10	14391971	14392130	+	0	NA	Intergenic	Intergenic	-8773	NR_036181	100422843		NR_036181	ENSG00000266321	MIR4293	-	microRNA 4293	ncRNA
19260	chr1	172697021	172697890	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	38352	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
37987	chr11	35031851	35032150	+	0	NA	Intergenic	Intergenic	90163	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
150160	chr21	38833051	38833350	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-24339	NR_109926	101928398		NR_109926	ENSG00000287082	LOC101928398	-	uncharacterized LOC101928398	ncRNA
158601	chr3	4828871	4829330	+	0	NA	intron (NM_002222, intron 56 of 57)	MIRc|SINE|MIR	77401	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
47919	chr12	6773521	6774200	+	0	NA	exon (NM_002286, exon 3 of 8)	exon (NM_002286, exon 3 of 8)	1340	NM_002286	3902		NM_002286	ENSG00000089692	LAG3	CD223	lymphocyte activating 3	protein-coding
172527	chr4	2295271	2296080	+	0	NA	intron (NM_020972, intron 8 of 12)	intron (NM_020972, intron 8 of 12)	-33566	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
103432	chr17	78257451	78257750	+	0	NA	Intergenic	Intergenic	9284	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
215887	chr8	8027601	8028330	+	0	NA	Intergenic	CpG	-30444	NM_001037380	641517		NM_001037380	ENSG00000206034	DEFB109B	DEF109P1B|DEFB109|DEFB109P1B|HBD9	defensin beta 109B	protein-coding
170849	chr3	190618201	190618600	+	0	NA	intron (NR_157352, intron 5 of 10)	intron (NR_157352, intron 5 of 10)	104315	NM_134470	3556		NM_002182	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
84956	chr16	31377271	31378030	+	0	NA	intron (NM_000887, intron 23 of 29)	intron (NM_000887, intron 23 of 29)	-15685	NM_005353	3681		NM_005353	ENSG00000156886	ITGAD	ADB2|CD11D	integrin subunit alpha D	protein-coding
24487	chr1	244319521	244320450	+	0	NA	Intergenic	Intergenic	-32650	NM_001276348	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
194640	chr6	33585471	33586780	+	0	NA	TTS (NR_027908)	TTS (NR_027908)	2426	NR_028361	449520		NM_001005478	ENSG00000293518	GGNBP1	-	gametogenetin binding protein 1 (pseudogene)	pseudo
160412	chr3	28250951	28251300	+	0	NA	intron (NM_001331187, intron 1 of 3)	MSTB2|LTR|ERVL-MaLR	9506	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
236956	chrX	101206501	101206780	+	0	NA	Intergenic	Intergenic	-13304	NM_001171184	1821		NM_001939	ENSG00000102385	DRP2	DRP-2	dystrophin related protein 2	protein-coding
13455	chr1	114505151	114505680	+	0	NA	intron (NM_033020, intron 1 of 18)	intron (NM_033020, intron 1 of 18)	5788	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
144010	chr20	33368201	33368400	+	0	NA	intron (NM_001278169, intron 11 of 13)	AluJb|SINE|Alu	33219	NM_016408	51654		NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
223945	chr9	976371	976530	+	0	NA	promoter-TSS (NM_021240)	promoter-TSS (NM_021240)	-205	NM_021240	58524		NM_021240	ENSG00000064218	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
85494	chr16	50747201	50748400	+	0	NA	intron (NM_001378745, intron 3 of 18)	intron (NM_001378745, intron 3 of 18)	5385	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
148950	chr21	10342571	10343200	+	0	NA	Intergenic	Intergenic	-70612	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
158951	chr3	10191001	10191400	+	0	NA	intron (NM_001570, intron 2 of 12)	AluYm1|SINE|Alu	26281	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
204590	chr7	5299121	5299780	+	0	NA	intron (NM_153247, intron 9 of 10)	intron (NM_153247, intron 9 of 10)	16507	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
154011	chr22	30430401	30430750	+	0	NA	Intergenic	L2a|LINE|L2	-2111	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
114091	chr19	11113651	11113750	+	0	NA	TTS (NR_106946)	TTS (NR_106946)	226	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
46398	chr11	126316071	126316230	+	0	NA	intron (NM_014026, intron 2 of 5)	intron (NM_014026, intron 2 of 5)	12090	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
78894	chr15	101008001	101008780	+	0	NA	intron (NM_024652, intron 6 of 33)	intron (NM_024652, intron 6 of 33)	89033	NM_024652	79705		NM_024652	ENSG00000154237	LRRK1	OSMD|RIPK6|Roco1	leucine rich repeat kinase 1	protein-coding
174223	chr4	37780321	37781380	+	0	NA	Intergenic	Intergenic	-45836	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
212489	chr7	128543151	128543730	+	0	NA	Intergenic	Intergenic	66692	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
67109	chr14	68376051	68376150	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	252687	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
164749	chr3	69063601	69064400	+	0	NA	intron (NM_003968, intron 7 of 17)	intron (NM_003968, intron 7 of 17)	-11667	NM_001363879	7110		NM_007114	ENSG00000144747	TMF1	ARA160|TMF	TATA element modulatory factor 1	protein-coding
12249	chr1	100438671	100439130	+	0	NA	intron (NM_001319210, intron 5 of 16)	intron (NM_001319210, intron 5 of 16)	86394	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
45462	chr11	118530501	118531950	+	0	NA	promoter-TSS (NM_001318757)	promoter-TSS (NM_001318757)	33	NR_134852	84866		NM_032780	ENSG00000149582	TMEM25	-	transmembrane protein 25	protein-coding
213127	chr7	131347121	131347380	+	0	NA	intron (NM_001321316, intron 1 of 17)	HAL1ME|LINE|L1	19374	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
174347	chr4	38702371	38702530	+	0	NA	TTS (NM_016531)	TTS (NM_016531)	-37822	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
236606	chrX	74291721	74292910	+	0	NA	intron (NR_028379, intron 1 of 6)	intron (NR_028379, intron 1 of 6)	1259	NR_028379	100302692		NR_028379	ENSG00000230590	FTX	LINC00182|MIR374AHG|NCRNA00182	FTX transcript, XIST regulator	ncRNA
125850	chr2	24461871	24462230	+	0	NA	Intergenic	Intergenic	-29204	NM_147223	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
63127	chr13	113418701	113418930	+	0	NA	Intergenic	Intergenic	-4422	NM_001304433	113622		NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
28734	chr10	61959871	61960230	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	58351	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
18647	chr1	166920701	166921100	+	0	NA	exon (NM_199351, exon 9 of 10)	exon (NM_199351, exon 9 of 10)	-44636	NM_053053	117143		NM_053053	ENSG00000152382	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
148600	chr21	5120071	5120230	+	0	NA	TTS (NM_001320384)	TTS (NM_001320384)	8219	NM_001363761	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
140161	chr2	231615751	231616130	+	0	NA	Intergenic	AluSx3|SINE|Alu	23076	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
205316	chr7	12248301	12248500	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	37106	NM_001134232	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
62743	chr13	106563071	106563580	+	0	NA	intron (NM_018011, intron 1 of 3)	MIRb|SINE|MIR	4812	NM_018011	55082		NM_018011	ENSG00000134884	ARGLU1	-	arginine and glutamate rich 1	protein-coding
136100	chr2	173913071	173913250	+	0	NA	exon (NM_003111, exon 6 of 7)	exon (NM_003111, exon 6 of 7)	50720	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
187015	chr5	139759171	139759330	+	0	NA	Intergenic	Intergenic	-13027	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
191241	chr6	5860901	5861100	+	0	NA	Intergenic	L1MA9|LINE|L1	143044	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
183628	chr5	80229301	80229900	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	26448	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
80056	chr16	1974571	1975400	+	0	NA	exon (NM_006453, exon 7 of 22)	exon (NM_006453, exon 7 of 22)	2932	NM_006453	10607		NM_006453	ENSG00000183751	TBL3	SAZD|UTP13	transducin beta like 3	protein-coding
81758	chr16	11494871	11495030	+	0	NA	intron (NM_001370704, intron 10 of 66)	AluSz6|SINE|Alu	29690	NR_110907	101927131		NR_110907	ENSG00000262999	LOC101927131	-	uncharacterized LOC101927131	ncRNA
153382	chr22	24552671	24553200	+	0	NA	intron (NM_001284251, intron 1 of 5)	AluJr|SINE|Alu	2203	NM_001284257	83606		NM_031444	ENSG00000138867	GUCD1	C22orf13|LLN4	guanylyl cyclase domain containing 1	protein-coding
10664	chr1	70675771	70675930	+	0	NA	Intergenic	LTR53|LTR|ERVL	-30603	NR_125938	101927244		NR_125938	ENSG00000229051	LINC01788	-	long intergenic non-protein coding RNA 1788	ncRNA
234403	chrX	16724901	16725100	+	0	NA	intron (NR_033181, intron 1 of 8)	MLT1L|LTR|ERVL-MaLR	5388	NR_033181	94056		NM_032796	ENSG00000169895	SYAP1	BSTA|PRO3113	synapse associated protein 1	protein-coding
79532	chr16	818621	818930	+	0	NA	Intergenic	(TGA)n|Simple_repeat|Simple_repeat	13332	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
235005	chrX	39859921	39860830	+	0	NA	Intergenic	MIR|SINE|MIR	22814	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
44122	chr11	96062071	96062850	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-138353	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
29659	chr10	71933521	71934180	+	0	NA	Intergenic	L1M8|LINE|L1	-30545	NM_004273	9469		NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate sulfotransferase 3	protein-coding
90324	chr17	1122851	1123800	+	0	NA	intron (NM_001322840, intron 2 of 22).2	intron (NM_001322840, intron 2 of 22).2	3247	NM_001322840	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
13937	chr1	120213471	120213750	+	0	NA	Intergenic	Intergenic	-37090	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
123195	chr19	52600821	52602230	+	0	NA	Intergenic	CpG	4841	NR_023311	7696		NM_003438		ZNF137P	ZNF137|pHZ-30	zinc finger protein 137, pseudogene	pseudo
68025	chr14	75147271	75147880	+	0	NA	intron (NM_006827, intron 3 of 4)	intron (NM_006827, intron 3 of 4)	-20527	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
194996	chr6	35393201	35393400	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	50742	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
998	chr1	1845621	1846350	+	0	NA	intron (NM_001282538, intron 1 of 9)	L1MC4|LINE|L1	45102	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
188539	chr5	156142001	156142200	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-185064	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
137796	chr2	199913971	199914130	+	0	NA	intron (NM_153689, intron 1 of 1)	MIR|SINE|MIR	2757	NM_153689	205327		NM_153689	ENSG00000178074	C2orf69	COXPD53	chromosome 2 open reading frame 69	protein-coding
7315	chr1	32623651	32624130	+	0	NA	intron (NM_001366266, intron 4 of 4)	THE1C|LTR|ERVL-MaLR	26660	NM_001366278	339487		NM_178547	ENSG00000176261	ZBTB8OS	ARCH|ARCH2	zinc finger and BTB domain containing 8 opposite strand	protein-coding
3176	chr1	13697921	13698180	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2138	NM_001135610	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
158865	chr3	9846151	9846700	+	0	NA	Intergenic	Intergenic	-2366	NM_001351737	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
109161	chr19	246951	247400	+	0	NA	Intergenic	TAR1|Satellite|telo	43964	NM_177543	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
94068	chr17	27468051	27468550	+	0	NA	intron (NM_001367810, intron 1 of 18)	AluSz|SINE|Alu	-3664	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
63099	chr13	113291651	113292780	+	0	NA	Intergenic	MER65C|LTR|ERV1	-5024	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
142533	chr20	5038751	5039730	+	0	NA	Intergenic	AluJb|SINE|Alu	-28927	NM_203327	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
71210	chr14	105088551	105088650	+	0	NA	Intergenic	Intergenic	-5547	NR_110546	102723354		NR_110546		LINC02298	-	long intergenic non-protein coding RNA 2298	ncRNA
31420	chr10	95692471	95692630	+	0	NA	intron (NM_015631, intron 3 of 13)	intron (NM_015631, intron 3 of 13)	1377	NM_015631	26123		NM_015631	ENSG00000119977	TCTN3	C10orf61|JBTS18|OFD4|TECT3	tectonic family member 3	protein-coding
17058	chr1	156100401	156101480	+	0	NA	intron (NM_001282625, intron 3 of 12)	L2b|LINE|L2	-13771	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
158739	chr3	8972271	8972850	+	0	NA	Intergenic	AluJr|SINE|Alu	-9088	NM_020165	56852		NM_020165	ENSG00000070950	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
19486	chr1	175024771	175025330	+	0	NA	Intergenic	L1MB3|LINE|L1	-1595	NR_037606	63931		NM_022100	ENSG00000120333	MRPS14	COXPD38|DJ262D12.2|HSMRPS14|MRP-S14|S14mt|uS14m	mitochondrial ribosomal protein S14	protein-coding
105286	chr17	82486121	82487080	+	0	NA	intron (NM_031968, intron 11 of 11)	intron (NM_031968, intron 11 of 11)	27859	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
144237	chr20	34449601	34450480	+	0	NA	intron (NM_031483, intron 12 of 24)	L1MD2|LINE|L1	-16285	NR_030374	693229		NR_030374	ENSG00000207997	MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	ncRNA
194968	chr6	35318401	35318600	+	0	NA	intron (NM_022047, intron 7 of 10)	CpG-23534	20682	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
139801	chr2	230321121	230322130	+	0	NA	Intergenic	Intergenic	-5546	NM_001308163	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
86922	chr16	68084421	68086190	+	0	NA	promoter-TSS (NM_004555)	promoter-TSS (NM_004555)	-65	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
86893	chr16	68004651	68005000	+	0	NA	Intergenic	Intergenic	-4206	NR_136706	64174		NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
180117	chr5	1294371	1295680	+	0	NA	promoter-TSS (NM_198253)	promoter-TSS (NM_198253)	43	NM_198253	7015		NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
83639	chr16	28297051	28297550	+	0	NA	intron (NM_001024401, intron 1 of 3)	AluSz|SINE|Alu	4775	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
22173	chr1	212260771	212261280	+	0	NA	intron (NR_125984, intron 1 of 3)	intron (NR_125984, intron 1 of 3)	23996	NR_125984	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
137768	chr2	198372021	198372350	+	0	NA	intron (NR_110267, intron 2 of 2)	intron (NR_110267, intron 2 of 2)	2912	NR_110267	101927619		NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
42640	chr11	72411421	72411980	+	0	NA	intron (NM_001258394, intron 2 of 17)	intron (NM_001258394, intron 2 of 17)	22831	NM_030813	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
175748	chr4	77740021	77740280	+	0	NA	intron (NM_144571, intron 8 of 11)	AluJo|SINE|Alu	78914	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
2569	chr1	9789151	9789450	+	0	NA	intron (NM_014944, intron 1 of 17)	L1MB3|LINE|L1	34665	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
207572	chr7	44943651	44944150	+	0	NA	Intergenic	L1M5|LINE|L1	35115	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
143757	chr20	32379671	32379830	+	0	NA	intron (NM_015338, intron 3 of 11)	AluSx1|SINE|Alu	20685	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
172370	chr4	1750401	1751450	+	0	NA	Intergenic	L2a|LINE|L2	29404	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
210618	chr7	100441471	100441630	+	0	NA	Intergenic	AluY|SINE|Alu	-5053	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
90968	chr17	2693501	2695000	+	0	NA	exon (NM_001366662, exon 18 of 26)	exon (NM_001366662, exon 18 of 26)	-1331	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
49871	chr12	38138151	38138850	+	0	NA	Intergenic	CpG	-178274	NM_001308340	144245		NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10 alpha-1,2-glucosyltransferase B	protein-coding
172845	chr4	3245051	3245350	+	0	NA	5' UTR (NM_001330620, exon 2 of 6)	5' UTR (NM_001330620, exon 2 of 6)	831	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
151637	chr22	16565251	16565850	+	0	NA	Intergenic	(CAAGCCAGC)n|Simple_repeat|Simple_repeat	27260	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
6251	chr1	27559971	27560130	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	43444	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
139665	chr2	226902071	226902230	+	0	NA	intron (NM_001349069, intron 5 of 8)	intron (NM_001349069, intron 5 of 8)	66096	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
213292	chr7	134990901	134991100	+	0	NA	intron (NM_001345852, intron 3 of 9)	L1MEf|LINE|L1	4492	NM_001345851	340351		NM_178563	ENSG00000146856	AGBL3	CCP3	AGBL carboxypeptidase 3	protein-coding
43705	chr11	86021251	86021900	+	0	NA	intron (NM_007166, intron 4 of 19)	L1MB7|LINE|L1	47509	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
106860	chr18	24063001	24063750	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-47915	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
4434	chr1	21291621	21292000	+	0	NA	intron (NM_001113348, intron 1 of 18)	AluSz|SINE|Alu	-1347	NM_001397	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
192677	chr6	26234601	26235430	+	0	NA	promoter-TSS (NM_005320)	promoter-TSS (NM_005320)	-28	NM_005320	3007		NM_005320	ENSG00000124575	H1-3	H1.3|H1D|H1F3|H1s-2|HIST1H1D	H1.3 linker histone, cluster member	protein-coding
88949	chr16	87843551	87844100	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-9165	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
13306	chr1	113392651	113392750	+	0	NA	intron (NM_152900, intron 1 of 20)	intron (NM_152900, intron 1 of 20)	2185	NM_152900	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
207465	chr7	44612071	44612230	+	0	NA	intron (NM_001363523, intron 1 of 23)	L1MD1|LINE|L1	5523	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
49178	chr12	15254321	15254400	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-32943	NM_032918	85004		NM_032918	ENSG00000134533	RERG	-	RAS like estrogen regulated growth inhibitor	protein-coding
30711	chr10	80699471	80699830	+	0	NA	Intergenic	Intergenic	49853	NR_155749	105378386		NR_155749	ENSG00000231082	LINC02655	-	long intergenic non-protein coding RNA 2655	ncRNA
222276	chr8	133295901	133298430	+	0	NA	promoter-TSS (NM_001135242)	promoter-TSS (NM_001135242)	-25	NM_001374845	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
210485	chr7	100162451	100162650	+	0	NA	intron (NM_024637, intron 3 of 3)	AluSg4|SINE|Alu	-3827	NM_018275	55262		NM_018275	ENSG00000146826	TRAPPC14	C7orf43|MAP11|MCPH25	trafficking protein particle complex subunit 14	protein-coding
69581	chr14	97177021	97177600	+	0	NA	Intergenic	Intergenic	22453	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
46156	chr11	123061351	123065280	+	0	NA	Intergenic	Intergenic	-1179	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
231842	chr9	132673251	132673830	+	0	NA	intron (NR_133925, intron 1 of 5)	intron (NR_133925, intron 1 of 5)	3076	NM_012204	9329		NM_012204	ENSG00000125484	GTF3C4	KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA	general transcription factor IIIC subunit 4	protein-coding
91573	chr17	5191471	5192500	+	0	NA	promoter-TSS (NM_032530)	promoter-TSS (NM_032530)	-22	NR_034082	100130950		NR_034082	ENSG00000261879	ZNF594-DT	-	ZNF594 divergent transcript	ncRNA
215506	chr7	158667071	158668360	+	0	NA	intron (NM_001281932, intron 14 of 28)	intron (NM_001281932, intron 14 of 28)	37089	NM_001281932	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
187154	chr5	140555371	140555600	+	0	NA	intron (NM_001035235, intron 2 of 4)	AluSx|SINE|Alu	1971	NR_045587	10011		NM_001035235	ENSG00000213523	SRA1	SRA|SRAP|STRAA1|pp7684	steroid receptor RNA activator 1	protein-coding
39706	chr11	61749501	61749700	+	0	NA	Intergenic	Intergenic	-3036	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
29617	chr10	71765721	71766050	+	0	NA	intron (NM_022153, intron 1 of 6)	intron (NM_022153, intron 1 of 6)	7635	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
230995	chr9	129499451	129499750	+	0	NA	intron (NR_038955, intron 2 of 4)	intron (NR_038955, intron 2 of 4)	10940	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
144548	chr20	35728601	35729030	+	0	NA	intron (NM_184234, intron 6 of 16)	AluSx|SINE|Alu	13445	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
138840	chr2	216501671	216502300	+	0	NA	3' UTR (NM_000998, exon 4 of 4)	3' UTR (NM_000998, exon 4 of 4)	3141	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
123575	chr19	54454371	54455080	+	0	NA	intron (NM_001375640, intron 6 of 14).3	intron (NM_001375640, intron 6 of 14).3	5068	NM_001375640	114823		NM_052925	ENSG00000167615	LENG8	pp13842	leukocyte receptor cluster member 8	protein-coding
153280	chr22	24160371	24160880	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-20862	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
138375	chr2	203999571	203999930	+	0	NA	Intergenic	L2|LINE|L2	62987	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
103484	chr17	78358601	78359500	+	0	NA	exon (NM_003955, exon 2 of 2)	exon (NM_003955, exon 2 of 2)	617	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
176581	chr4	98688721	98689980	+	0	NA	Intergenic	Intergenic	30448	NR_148380	105377342		NR_148380		TSPAN5-DT	-	TSPAN5 divergent transcript	ncRNA
47435	chr12	3299801	3301000	+	0	NA	non-coding (NR_148995, exon 10 of 12)	non-coding (NR_148995, exon 10 of 12)	65722	NR_148995	100128253		NR_148995		LOC100128253	-	uncharacterized LOC100128253	ncRNA
186744	chr5	139305301	139305650	+	0	NA	intron (NM_001194956, intron 1 of 13)	intron (NM_001194956, intron 1 of 13)	11725	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
159968	chr3	17739501	17739900	+	0	NA	5' UTR (NM_014744, exon 1 of 22)	5' UTR (NM_014744, exon 1 of 22)	1207	NM_014744	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
232124	chr9	133977951	133978050	+	0	NA	intron (NM_001134398, intron 1 of 29)	intron (NM_001134398, intron 1 of 29)	14324	NM_001134398	7410		NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
54734	chr12	93683801	93684000	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	5131	NM_001330126	8738		NM_003805	ENSG00000169372	CRADD	MRT34|RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding
15986	chr1	151948121	151948380	+	0	NA	Intergenic	AluSc8|SINE|Alu	-38739	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
188028	chr5	149648501	149649300	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	67402	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
82053	chr16	12750271	12750630	+	0	NA	intron (NM_018340, intron 2 of 3)	Tigger1|DNA|TcMar-Tigger	30129	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
184446	chr5	99258721	99259040	+	0	NA	Intergenic	Intergenic	-275110	NR_110562	102724855		NR_110562		LINC02113	CTD-2151A2.1	long intergenic non-protein coding RNA 2113	ncRNA
195583	chr6	37520551	37521580	+	0	NA	intron (NR_126057, intron 1 of 3)	intron (NR_126057, intron 1 of 3)	13717	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
207343	chr7	44067451	44067550	+	0	NA	3' UTR (NM_001284313, exon 11 of 11)	3' UTR (NM_001284313, exon 11 of 11)	-1933	NM_000290	5224		NM_000290	ENSG00000164708	PGAM2	GSD10|PGAM-M|PGAMM	phosphoglycerate mutase 2	protein-coding
106473	chr18	14173621	14174130	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-5222	NR_040113	440482		NM_001029999		ANKRD20A5P	ANKRD20A5	ankyrin repeat domain 20 family member A5, pseudogene	pseudo
177138	chr4	108117621	108117900	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	49037	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
87250	chr16	69765521	69765780	+	0	NA	intron (NM_001270455, intron 1 of 8)	AluSz|SINE|Alu	3318	NM_001270454	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
129131	chr2	65300151	65300250	+	0	NA	Intergenic	Intergenic	66578	NM_001128210	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
198508	chr6	106511521	106513250	+	0	NA	exon (NM_001624, exon 1 of 20)	exon (NM_001624, exon 1 of 20)	530	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
233413	chr9	137581501	137581700	+	0	NA	TTS (NM_138462)	TTS (NM_138462)	-2675	NM_138778	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
66339	chr14	61439001	61440230	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	118172	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
143281	chr20	25255451	25255950	+	0	NA	intron (NM_002862, intron 1 of 19)	intron (NM_002862, intron 1 of 19)	7615	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
142328	chr20	3674301	3674500	+	0	NA	intron (NM_025220, intron 6 of 21)	intron (NM_025220, intron 6 of 21)	7610	NM_001282447	80332		NM_025220	ENSG00000149451	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
165763	chr3	105758501	105759000	+	0	NA	intron (NR_135806, intron 4 of 20)	MER52A|LTR|ERV1	108841	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
137229	chr2	191628801	191629800	+	0	NA	Intergenic	L1MB1|LINE|L1	-48772	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
110777	chr19	2425971	2426150	+	0	NA	exon (NM_182973, exon 18 of 18)	exon (NM_182973, exon 18 of 18)	1526	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
58487	chr12	132156501	132157480	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	12533	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
207227	chr7	43678951	43679880	+	0	NA	intron (NM_001321199, intron 1 of 6)	intron (NM_001321199, intron 1 of 6)	50108	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
204170	chr7	2420351	2420650	+	0	NA	intron (NM_018641, intron 1 of 1)	L1MB3|LINE|L1	16889	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
104676	chr17	81498821	81500850	+	0	NA	Intergenic	Intergenic	12964	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
153334	chr22	24324951	24325300	+	0	NA	intron (NM_001254732, intron 5 of 14)	intron (NM_001254732, intron 5 of 14)	-16983	NM_001254733	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
108158	chr18	62713651	62714050	+	0	NA	Intergenic	Intergenic	-1691	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
186643	chr5	138562201	138562630	+	0	NA	intron (NM_004134, intron 9 of 16)	AluSc8|SINE|Alu	-1305	NR_002913	26785		NR_002913	ENSG00000206989	SNORD63	RNU63|SNORD63A|U63	small nucleolar RNA, C/D box 63	snoRNA
161921	chr3	46053371	46053530	+	0	NA	intron (NM_001381860, intron 3 of 3)	HERVK3-int|LTR|ERVK	-25967	NM_001024644	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
11463	chr1	89956921	89957400	+	0	NA	Intergenic	Intergenic	37806	NR_002830	492303		NR_002830		GEMIN8P4	-	gem nuclear organelle associated protein 8 pseudogene 4	pseudo
8222	chr1	39683801	39684880	+	0	NA	intron (NM_016257, intron 2 of 3)	CpG-938	7093	NM_016257	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
153001	chr22	23181771	23181930	+	0	NA	exon (NM_004327, exon 1 of 23)	exon (NM_004327, exon 1 of 23)	1341	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
107024	chr18	32096571	32097380	+	0	NA	intron (NM_198128, intron 1 of 4)	AluJr|SINE|Alu	4369	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
123462	chr19	54153601	54154280	+	0	NA	intron (NM_014516, intron 17 of 17).8	intron (NM_014516, intron 17 of 17).8	5781	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
47957	chr12	6857471	6857830	+	0	NA	non-coding (NR_168449, exon 7 of 20)	non-coding (NR_168449, exon 7 of 20)	5500	NR_168456	8078		NM_003481	ENSG00000111667	USP5	ISOT	ubiquitin specific peptidase 5	protein-coding
141353	chr2	240619871	240620400	+	0	NA	intron (NM_001195381, intron 5 of 5)	intron (NM_001195381, intron 5 of 5)	-5110	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
165664	chr3	101855871	101856500	+	0	NA	intron (NM_031419, intron 9 of 11)	AluSc8|SINE|Alu	6671	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
91714	chr17	6560121	6560600	+	0	NA	Intergenic	Intergenic	-3805	NM_001165966	83394		NM_031220	ENSG00000091622	PITPNM3	ACKR6|CORD5|NIR1|RDGBA3	PITPNM family member 3	protein-coding
226814	chr9	77433671	77434030	+	0	NA	intron (NM_004297, intron 3 of 6)	intron (NM_004297, intron 3 of 6)	-13799	NR_121184	101927422		NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
143000	chr20	20364501	20364700	+	0	NA	Intergenic	CpG	-3504	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
60746	chr13	44573971	44574580	+	0	NA	exon (NM_183422, exon 1 of 3)	exon (NM_183422, exon 1 of 3)	-1621	NR_038381	641467		NR_038381	ENSG00000278156	TSC22D1-AS1	-	TSC22D1 antisense RNA 1	ncRNA
79849	chr16	1459271	1459800	+	0	NA	intron (NM_001114331, intron 5 of 23)	intron (NM_001114331, intron 5 of 23)	-15046	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
61048	chr13	48241651	48242630	+	0	NA	intron (NM_021999, intron 1 of 5)	HAL1|LINE|L1	8934	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
91675	chr17	5563971	5564130	+	0	NA	intron (NM_014922, intron 3 of 15)	intron (NM_014922, intron 3 of 15)	20459	NM_001033053	22861		NM_014922	ENSG00000091592	NLRP1	AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|JRRP|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
130145	chr2	74876221	74876680	+	0	NA	intron (NM_001371525, intron 7 of 17)	intron (NM_001371525, intron 7 of 17)	-32681	NR_125792	102724515		NR_125792	ENSG00000204792	LINC01291	LINC01293	long intergenic non-protein coding RNA 1291	ncRNA
193721	chr6	31197701	31198600	+	0	NA	intron (NR_026791, intron 1 of 1)	intron (NR_026791, intron 1 of 1)	390	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
57723	chr12	122877451	122877750	+	0	NA	intron (NM_024667, intron 1 of 3)	L2c|LINE|L2	18524	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
172272	chr4	1435201	1435400	+	0	NA	Intergenic	Intergenic	-28858	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
49962	chr12	40325371	40325650	+	0	NA	intron (NM_198578, intron 38 of 50)	MER20|DNA|hAT-Charlie	-67884	NM_173600	283463		NM_173600	ENSG00000205592	MUC19	MUC-19	mucin 19, oligomeric	protein-coding
169207	chr3	156828001	156828200	+	0	NA	intron (NM_001193283, intron 1 of 4)	intron (NM_001193283, intron 1 of 4)	1747	NM_001193283	389170		NM_001004316	ENSG00000197980	LEKR1	-	leucine, glutamate and lysine rich 1	protein-coding
117826	chr19	30650151	30650250	+	0	NA	intron (NM_001352260, intron 5 of 5)	intron (NM_001352260, intron 5 of 5)	277816	NM_001352260	9745		NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
199011	chr6	111086921	111087900	+	0	NA	promoter-TSS (NM_018593)	promoter-TSS (NM_018593)	-93	NM_018593	117247		NM_018593	ENSG00000112394	SLC16A10	MCT10|PRO0813|TAT1	solute carrier family 16 member 10	protein-coding
132092	chr2	101312951	101313450	+	0	NA	Intergenic	Intergenic	3750	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
235936	chrX	53221801	53222200	+	0	NA	intron (NR_148672, intron 1 of 26)	MIRc|SINE|MIR	3207	NR_148673	8242		NM_004187	ENSG00000126012	KDM5C	DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169	lysine demethylase 5C	protein-coding
144989	chr20	37384171	37385150	+	0	NA	intron (NM_198291, intron 4 of 13)	CpG	38520	NM_198291	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
213390	chr7	135980021	135981600	+	0	NA	Intergenic	MER51A|LTR|ERV1	-3451	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
36186	chr11	3219871	3220030	+	0	NA	intron (NR_027138, intron 1 of 1)	intron (NR_027138, intron 1 of 1)	-1137	NM_001164377	386746		NM_001164377	ENSG00000182170	MRGPRG	GPR169|MRGG	MAS related GPR family member G	protein-coding
43038	chr11	74019571	74020400	+	0	NA	intron (NM_001286577, intron 32 of 32)	intron (NM_001286577, intron 32 of 32)	-10748	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
237244	chrX	110004671	110004830	+	0	NA	intron (NM_001353849, intron 2 of 7)	intron (NM_001353849, intron 2 of 7)	1636	NM_032227	84187		NM_017698	ENSG00000157600	TMEM164	bB360B22.3	transmembrane protein 164	protein-coding
149641	chr21	33542401	33543800	+	0	NA	promoter-TSS (NM_001136006)	promoter-TSS (NM_001136006)	62	NR_103797	6651		NM_003103	ENSG00000159140	SON	BASS1|C21orf50|DBP-5|NREBP|SON3|TOKIMS	SON DNA and RNA binding protein	protein-coding
44374	chr11	102546901	102547400	+	0	NA	Intergenic	Intergenic	-16403	NM_002423	4316		NM_002423	ENSG00000137673	MMP7	MMP-7|MPSL1|PUMP-1	matrix metallopeptidase 7	protein-coding
62394	chr13	99274651	99275700	+	0	NA	intron (NR_026644, intron 4 of 8)	MLT1F1|LTR|ERVL-MaLR	-16747	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
1892	chr1	6443971	6444350	+	0	NA	intron (NM_031475, intron 5 of 12)	intron (NM_031475, intron 5 of 12)	-14264	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
21226	chr1	204151321	204152800	+	0	NA	promoter-TSS (NM_001297761)	promoter-TSS (NM_001297761)	-16	NM_018208	55224		NM_018208	ENSG00000143845	ETNK2	EKI2|HMFT1716	ethanolamine kinase 2	protein-coding
59646	chr13	28166501	28166700	+	0	NA	intron (NM_175854, intron 1 of 18)	MLT1A1-int|LTR|ERVL-MaLR	-27426	NR_029383	100288730		NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
159640	chr3	15309151	15309650	+	0	NA	intron (NM_001018009, intron 2 of 8)	FAM|SINE|Alu	23186	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
90172	chr17	313751	315000	+	0	NA	intron (NM_006987, intron 5 of 9).2	intron (NM_006987, intron 5 of 9).2	-17144	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
89994	chr16	89870921	89871650	+	0	NA	TTS (NM_032451)	TTS (NM_032451)	-2307	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
107942	chr18	58045521	58046080	+	0	NA	intron (NM_001243960, intron 1 of 28)	intron (NM_001243960, intron 1 of 28)	-1426	NM_001144964	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
112478	chr19	6414151	6414730	+	0	NA	3' UTR (NM_001366299, exon 19 of 19)	3' UTR (NM_001366299, exon 19 of 19)	2071	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
132149	chr2	101736201	101736580	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	38125	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
14616	chr1	145423971	145424150	+	0	NA	Intergenic	AluJb|SINE|Alu	-18282	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
13866	chr1	117734901	117735580	+	0	NA	Intergenic	Intergenic	129192	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
202147	chr6	155155771	155156280	+	0	NA	intron (NM_001384547, intron 6 of 25)	L2c|LINE|L2	49038	NM_001384547	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
126830	chr2	30713901	30714900	+	0	NA	Intergenic	Intergenic	93046	NM_144575	92291		NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
180471	chr5	10987951	10988280	+	0	NA	exon (NM_001288715, exon 19 of 21)	exon (NM_001288715, exon 19 of 21)	-226881	NM_001291963	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
141059	chr2	238256301	238257280	+	0	NA	intron (NM_022817, intron 17 of 22)	intron (NM_022817, intron 17 of 22)	-16752	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
231275	chr9	130018451	130018750	+	0	NA	intron (NM_001363755, intron 1 of 15)	Alu|SINE|Alu	24589	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
227435	chr9	90092501	90092700	+	0	NA	Intergenic	Intergenic	-51101	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
57881	chr12	123425601	123426000	+	0	NA	intron (NR_130703, intron 1 of 2)	AluSx|SINE|Alu	10933	NR_130703	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
102997	chr17	76753001	76754500	+	0	NA	intron (NR_148239, intron 7 of 12)	intron (NR_148239, intron 7 of 12)	16072	NM_001242532	79157		NM_024311	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
232999	chr9	137002071	137002230	+	0	NA	Intergenic	L1MC4|LINE|L1	-5582	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
189274	chr5	172073021	172073280	+	0	NA	intron (NM_005990, intron 12 of 18)	AluSz|SINE|Alu	-66512	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
6813	chr1	30928871	30929900	+	0	NA	Intergenic	Intergenic	6391	NR_033295	692235		NR_033295		SNORD103B	U103B	small nucleolar RNA, C/D box 103B	snoRNA
159996	chr3	18355971	18356130	+	0	NA	intron (NM_001322873, intron 9 of 10)	intron (NM_001322873, intron 9 of 10)	69289	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
119916	chr19	41691351	41691650	+	0	NA	Intergenic	Intergenic	-3230	NM_001291485	1087		NM_006890	ENSG00000007306	CEACAM7	CGM2	CEA cell adhesion molecule 7	protein-coding
207192	chr7	43627371	43628650	+	0	NA	TTS (NM_004760)	TTS (NM_004760)	44902	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
63500	chr13	114222501	114222830	+	0	NA	Intergenic	Intergenic	-12180	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
100641	chr17	63687471	63687830	+	0	NA	intron (NM_002401, intron 8 of 15)	AluSx|SINE|Alu	12475	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
31321	chr10	92830901	92831380	+	0	NA	promoter-TSS (NM_001319194)	promoter-TSS (NM_001319194)	32	NM_001319194	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
131451	chr2	96333521	96334400	+	0	NA	Intergenic	Intergenic	-1806	NM_001281710	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
20176	chr1	193038351	193038450	+	0	NA	intron (NM_001350842, intron 3 of 11)	AluY|SINE|Alu	19015	NR_135615	107397392		NR_135615	ENSG00000238754	SCARNA18B	-	small Cajal body-specific RNA 18B	ncRNA
35329	chr11	1049571	1050130	+	0	NA	promoter-TSS (NR_160890)	promoter-TSS (NR_160890)	-30	NR_160890	101927503		NM_001323425	ENSG00000254872	LINC02688	-	long intergenic non-protein coding RNA 2688	ncRNA
50825	chr12	49100351	49100650	+	0	NA	intron (NM_001352161, intron 14 of 16)	intron (NM_001352161, intron 14 of 16)	-5699	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
77718	chr15	85698571	85698730	+	0	NA	intron (NM_007200, intron 17 of 36)	MER58A|DNA|hAT-Charlie	60075	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
91222	chr17	3928101	3928800	+	0	NA	intron (NM_174953, intron 20 of 22)	intron (NM_174953, intron 20 of 22)	-11985	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
57188	chr12	121445051	121445150	+	0	NA	promoter-TSS (NR_106957)	promoter-TSS (NR_106957)	-748	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
207049	chr7	39609221	39609980	+	0	NA	intron (NM_001282446, intron 2 of 2)	intron (NM_001282446, intron 2 of 2)	-13972	NM_005402	5898		NM_005402	ENSG00000006451	RALA	HINCONS|RAL	RAS like proto-oncogene A	protein-coding
175067	chr4	54056471	54057530	+	0	NA	intron (NM_012110, intron 1 of 5)	intron (NM_012110, intron 1 of 5)	7605	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
137047	chr2	190883821	190884380	+	0	NA	intron (NM_014905, intron 1 of 17)	intron (NM_014905, intron 1 of 17)	3279	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
156544	chr22	41432351	41432680	+	0	NA	TTS (NM_016272)	TTS (NM_016272)	14286	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
72529	chr15	34310251	34310730	+	0	NA	intron (NM_133647, intron 1 of 24)	(GT)n|Simple_repeat|Simple_repeat	8330	NM_005135	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
44	chr1	197651	197980	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	8782	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
55804	chr12	108724501	108725230	+	0	NA	intron (NM_014325, intron 1 of 10)	intron (NM_014325, intron 1 of 10)	5978	NM_001276471	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
154832	chr22	37066701	37067100	+	0	NA	exon (NM_001289000, exon 18 of 19)	exon (NM_001289000, exon 18 of 19)	15164	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
88642	chr16	85639021	85639400	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	25888	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
147682	chr20	62309821	62310500	+	0	NA	intron (NM_005560, intron 77 of 79)	intron (NM_005560, intron 77 of 79)	7163	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
118543	chr19	36118771	36119130	+	0	NA	intron (NR_155756, intron 2 of 5)	L2b|LINE|L2	3180	NM_001300971	1155		NM_001281	ENSG00000105254	TBCB	CG22|CKAP1|CKAPI	tubulin folding cofactor B	protein-coding
5707	chr1	26379521	26379830	+	0	NA	Intergenic	Intergenic	-6881	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
35127	chr11	702721	703630	+	0	NA	3' UTR (NM_001042463, exon 5 of 5)	3' UTR (NM_001042463, exon 5 of 5)	-3056	NM_022772	64787		NM_022772	ENSG00000177106	EPS8L2	DFNB106|EPS8R2	EPS8 signaling adaptor L2	protein-coding
226200	chr9	65283751	65284730	+	0	NA	exon (NM_001126334, exon 1 of 1)	exon (NM_001126334, exon 1 of 1)	969	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
2178	chr1	8516701	8517280	+	0	NA	intron (NM_012102, intron 8 of 23)	L1MD2|LINE|L1	-22077	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
220872	chr8	103417271	103417800	+	0	NA	intron (NM_015420, intron 1 of 10)	AluY|SINE|Alu	2149	NM_015420	25879		NM_015420	ENSG00000164934	DCAF13	GM83|HSPC064|Sof1|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
11070	chr1	85180971	85181280	+	0	NA	intron (NM_032184, intron 3 of 6)	intron (NM_032184, intron 3 of 6)	19891	NM_032184	84144		NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
79413	chr16	682121	682380	+	0	NA	exon (NM_005861, exon 6 of 7)	exon (NM_005861, exon 6 of 7)	1840	NM_001293197	10273		NM_005861	ENSG00000103266	STUB1	CHIP|HSPABP2|NY-CO-7|SCA48|SCAR16|SDCCAG7|UBOX1	STIP1 homology and U-box containing protein 1	protein-coding
196735	chr6	45322801	45323000	+	0	NA	exon (NM_001350326, exon 3 of 12)	exon (NM_001350326, exon 3 of 12)	-5417	NM_001015051	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
162090	chr3	46895001	46895780	+	0	NA	intron (NM_001184744, intron 3 of 14)	intron (NM_001184744, intron 3 of 14)	13141	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
125734	chr2	20662921	20663180	+	0	NA	Intergenic	AluJr4|SINE|Alu	-4094	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
104649	chr17	81460821	81461630	+	0	NA	exon (NM_001291324, exon 27 of 29)	exon (NM_001291324, exon 27 of 29)	-10037	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
234647	chrX	20122021	20122280	+	0	NA	Intergenic	AluSc|SINE|Alu	-5243	NM_001168466	256714		NM_152780	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
5648	chr1	26281321	26282950	+	0	NA	TTS (NM_031286)	TTS (NM_031286)	2049	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
176306	chr4	87389771	87390200	+	0	NA	intron (NM_016245, intron 1 of 6)	AluJb|SINE|Alu	1203	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
152154	chr22	20016171	20017750	+	0	NA	promoter-TSS (NM_001283179)	promoter-TSS (NM_001283179)	-40	NM_001322163	128989		NM_152906	ENSG00000183597	TANGO2	C22orf25|MECRCN	transport and golgi organization 2 homolog	protein-coding
39223	chr11	57643951	57644050	+	0	NA	Intergenic	L2c|LINE|L2	2802	NR_029673	406919		NR_029673	ENSG00000208009	MIR130A	MIRN130A|miRNA130A|mir-130a	microRNA 130a	ncRNA
18566	chr1	162823351	162823850	+	0	NA	Intergenic	MIR|SINE|MIR	32898	NM_001304512	51478		NM_016371	ENSG00000132196	HSD17B7	PRAP|SDR37C1	hydroxysteroid 17-beta dehydrogenase 7	protein-coding
145392	chr20	41366221	41366680	+	0	NA	intron (NM_052846, intron 1 of 3)	CpG	368	NM_052846	90187		NM_052846	ENSG00000183798	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
109981	chr19	1405801	1406000	+	0	NA	Intergenic	Intergenic	-1686	NM_170711	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
150980	chr21	44333971	44334880	+	0	NA	intron (NM_001271440, intron 3 of 6)	CpG	3913	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
226081	chr9	62662371	62662530	+	0	NA	Intergenic	L1P4b|LINE|L1	129888	NR_147619	103908604		NR_147619		FAM88F	-	family with sequence similarity 88 member F	ncRNA
86629	chr16	67433401	67433600	+	0	NA	intron (NM_000196, intron 1 of 4)	intron (NM_000196, intron 1 of 4)	2379	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
217874	chr8	37854001	37854200	+	0	NA	Intergenic	AluSx|SINE|Alu	-4239	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
89068	chr16	88458621	88459180	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	5620	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
59428	chr13	25375551	25375980	+	0	NA	intron (NM_016529, intron 1 of 36)	AluSc|SINE|Alu	3791	NM_016529	51761		NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
16674	chr1	155186801	155187000	+	0	NA	intron (NM_001371720, intron 11 of 11)	intron (NM_001371720, intron 11 of 11)	6009	NM_001204287	4582		NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|ADTKD2|CA 15-3|CD227|Ca15-3|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding
119662	chr19	40829121	40829850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-18385	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
233295	chr9	137320571	137321380	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-18704	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
40697	chr11	64778301	64781300	+	0	NA	Intergenic	Intergenic	-1258	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
68800	chr14	91241251	91242500	+	0	NA	intron (NM_001348437, intron 1 of 2)	L2a|LINE|L2	2829	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
205248	chr7	8114171	8114850	+	0	NA	intron (NR_146926, intron 13 of 13)	intron (NR_146926, intron 13 of 13)	145714	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
184479	chr5	100834651	100834750	+	0	NA	intron (NM_005668, intron 4 of 4)	MSTB|LTR|ERVL-MaLR	-18135	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
83932	chr16	29079171	29079780	+	0	NA	intron (NR_003369, intron 3 of 16)	AluY|SINE|Alu	4633	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
16715	chr1	155238151	155238850	+	0	NA	intron (NM_001171812, intron 4 of 9).3	intron (NM_001171812, intron 4 of 9).3	2749	NM_001171812	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
46316	chr11	125111151	125112530	+	0	NA	promoter-TSS (NM_001258241)	promoter-TSS (NM_001258241)	-214	NM_001258245	219854		NM_001080546	ENSG00000150433	TMEM218	JBTS39	transmembrane protein 218	protein-coding
211370	chr7	105000851	105001800	+	0	NA	Intergenic	Intergenic	-10160	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
27967	chr10	42554151	42554630	+	0	NA	Intergenic	AluSc|SINE|Alu	-1520	NR_026777	100129482		NR_026777	ENSG00000293313	ZNF37BP	KOX21|ZNF37B	zinc finger protein 37B, pseudogene	pseudo
211845	chr7	108573801	108574500	+	0	NA	3' UTR (NM_012328, exon 3 of 3)	3' UTR (NM_012328, exon 3 of 3)	4276	NM_012328	4189		NM_012328	ENSG00000128590	DNAJB9	ERdj4|MDG-1|MDG1|MST049|MSTP049	DnaJ heat shock protein family (Hsp40) member B9	protein-coding
69852	chr14	99257571	99258510	+	0	NA	intron (NM_022898, intron 1 of 2)	intron (NM_022898, intron 1 of 2)	14157	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
125633	chr2	19360551	19360650	+	0	NA	Intergenic	Intergenic	-1977	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
3905	chr1	17207901	17208500	+	0	NA	intron (NM_013358, intron 1 of 15).2	intron (NM_013358, intron 1 of 15).2	3072	NM_013358	29943		NM_013358	ENSG00000142623	PADI1	HPAD10|PAD1|PDI|PDI1	peptidyl arginine deiminase 1	protein-coding
230482	chr9	128223771	128223930	+	0	NA	intron (NM_001288739, intron 9 of 21)	AluY|SINE|Alu	-19628	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
64230	chr14	23076751	23077380	+	0	NA	intron (NM_014977, intron 8 of 18)	intron (NM_014977, intron 8 of 18)	-5496	NM_001164816	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
68461	chr14	85935871	85936030	+	0	NA	intron (NR_110155, intron 1 of 3)	AluJb|SINE|Alu	1272	NR_110155	101928767		NR_110155	ENSG00000258733	LINC02328	-	long intergenic non-protein coding RNA 2328	ncRNA
34467	chr10	132452001	132453780	+	0	NA	Intergenic	Intergenic	7701	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
206557	chr7	35650671	35650830	+	0	NA	intron (NM_022373, intron 5 of 8)	L1MA4A|LINE|L1	44385	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
136559	chr2	177552001	177553430	+	0	NA	promoter-TSS (NM_152517)	promoter-TSS (NM_152517)	81	NM_152517	150737		NM_152517	ENSG00000196659	IFT70B	IFT70|TTC30B|fleer	intraflagellar transport 70B	protein-coding
140981	chr2	237979671	237980230	+	0	NA	intron (NR_103500, intron 3 of 10)	intron (NR_103500, intron 3 of 10)	11157	NM_001278305	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
93985	chr17	21980321	21981480	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-222095	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
207076	chr7	39958221	39958850	+	0	NA	intron (NM_003718, intron 1 of 13)	L1ME4a|LINE|L1	8175	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
50599	chr12	48664121	48664650	+	0	NA	intron (NM_017822, intron 7 of 9)	AluY|SINE|Alu	3208	NR_002951	677794		NR_002951	ENSG00000207313	SNORA2B	ACA2b	small nucleolar RNA, H/ACA box 2B	snoRNA
185375	chr5	127746871	127747030	+	0	NA	intron (NM_001317938, intron 2 of 6)	intron (NM_001317938, intron 2 of 6)	43559	NM_001317938	728586		NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
22735	chr1	224332551	224332650	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2411	NM_206840	4931		NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP like	protein-coding
67867	chr14	74246171	74246330	+	0	NA	intron (NM_182894, intron 3 of 4)	intron (NM_182894, intron 3 of 4)	6801	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
171489	chr3	196566871	196567130	+	0	NA	5' UTR (NM_001345917, exon 2 of 3)	5' UTR (NM_001345917, exon 2 of 3)	1554	NM_001345917	348793		NM_182627	ENSG00000185798	WDR53	-	WD repeat domain 53	protein-coding
185840	chr5	132470971	132471130	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	19723	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
29952	chr10	73490971	73491130	+	0	NA	intron (NM_001289969, intron 1 of 12)	(T)n|Simple_repeat|Simple_repeat	-4702	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
115909	chr19	16603601	16604000	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	24404	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
192394	chr6	24774641	24776900	+	0	NA	intron (NM_001251991, intron 1 of 6)	intron (NM_001251991, intron 1 of 6)	357	NM_001251991	51053		NM_015895	ENSG00000112312	GMNN	Gem|MGORS6	geminin DNA replication inhibitor	protein-coding
204624	chr7	5383751	5384050	+	0	NA	intron (NM_001080495, intron 5 of 29)	AluJo|SINE|Alu	39646	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
16927	chr1	155902471	155902830	+	0	NA	intron (NM_001256821, intron 5 of 5)	AluSx1|SINE|Alu	8268	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
72401	chr15	31394521	31395180	+	0	NA	intron (NM_001302461, intron 1 of 1).3	L1MB8|LINE|L1	68015	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
21703	chr1	206735871	206736050	+	0	NA	Intergenic	Intergenic	34643	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
228893	chr9	112752571	112752730	+	0	NA	intron (NM_001012994, intron 1 of 8)	intron (NM_001012994, intron 1 of 8)	1890	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
72895	chr15	40335201	40335400	+	0	NA	exon (NM_207380, exon 11 of 11)	exon (NM_207380, exon 11 of 11)	5667	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
135028	chr2	156313871	156314030	+	0	NA	Intergenic	CR1-16_AMi|LINE|CR1	18771	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
96741	chr17	41685821	41686080	+	0	NA	Intergenic	MER11C|LTR|ERVK	-2935	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
211527	chr7	105350801	105351000	+	0	NA	intron (NM_001350742, intron 2 of 16)	MIRb|SINE|MIR	38021	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
178419	chr4	147760801	147761200	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	-21595	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
31091	chr10	89249271	89249630	+	0	NA	intron (NM_000235, intron 1 of 9)	L1ME1|LINE|L1	2325	NM_000235	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
35099	chr11	636001	636250	+	0	NA	Intergenic	Intergenic	-1144	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
225567	chr9	35938351	35939000	+	0	NA	Intergenic	Intergenic	19479	NM_019897	56656		NM_019897	ENSG00000278889	OR2S2	OR37A|OST715	olfactory receptor family 2 subfamily S member 2	protein-coding
56403	chr12	113223081	113223930	+	0	NA	intron (NM_017901, intron 1 of 27)	intron (NM_017901, intron 1 of 27)	2041	NM_017901	53373		NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
74585	chr15	60558151	60558250	+	0	NA	intron (NM_134260, intron 2 of 11)	intron (NM_134260, intron 2 of 11)	34326	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
115659	chr19	16133901	16134100	+	0	NA	promoter-TSS (NM_032855)	promoter-TSS (NM_032855)	-28	NR_111904	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
28900	chr10	63004151	63004250	+	0	NA	Intergenic	Intergenic	-129047	NM_001282405	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
72860	chr15	40270351	40270830	+	0	NA	intron (NM_001128628, intron 5 of 10)	MIRc|SINE|MIR	11996	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
199884	chr6	127819951	127820050	+	0	NA	intron (NM_001010923, intron 3 of 5).2	L1MCa|LINE|L1	35188	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
168842	chr3	152266471	152267530	+	0	NA	non-coding (NR_027038, exon 2 of 2)	non-coding (NR_027038, exon 2 of 2)	-1929	NM_001376823	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
848	chr1	1603951	1604480	+	0	NA	intron (NR_147951, intron 2 of 2)	intron (NR_147951, intron 2 of 2)	-4080	NM_001242659	643988		NM_001242659	ENSG00000228594	FNDC10	C1orf233	fibronectin type III domain containing 10	protein-coding
57206	chr12	121496571	121497600	+	0	NA	intron (NM_001005366, intron 11 of 22)	intron (NM_001005366, intron 11 of 22)	-52733	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
196869	chr6	49551271	49551600	+	0	NA	exon (NM_001145652, exon 1 of 1)	exon (NM_001145652, exon 1 of 1)	767	NM_001145652	135398		NM_153344	ENSG00000197261	C6orf141	-	chromosome 6 open reading frame 141	protein-coding
232670	chr9	136509771	136509930	+	0	NA	exon (NM_017617, exon 18 of 34)	exon (NM_017617, exon 18 of 34)	9776	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
215002	chr7	152366821	152367080	+	0	NA	intron (NM_170606, intron 1 of 58)	CpG	69053	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
145143	chr20	38827371	38827530	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	21753	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
213738	chr7	140395901	140396300	+	0	NA	intron (NM_032295, intron 1 of 11)	AluJr|SINE|Alu	2430	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
99956	chr17	57440521	57441580	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	82547	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
36208	chr11	3455751	3456030	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	21183	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
66137	chr14	60196301	60196530	+	0	NA	Intergenic	L1MD2|LINE|L1	-26551	NM_001322280	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
204723	chr7	5551371	5551530	+	0	NA	Intergenic	AluSc|SINE|Alu	-20849	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
132176	chr2	101797271	101798030	+	0	NA	intron (NM_001384572, intron 2 of 29)	intron (NM_001384572, intron 2 of 29)	99385	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
97549	chr17	44073451	44073950	+	0	NA	intron (NM_001384166, intron 2 of 6)	AluJb|SINE|Alu	2789	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
62024	chr13	87669451	87669550	+	0	NA	intron (NR_033829, intron 1 of 5)	intron (NR_033829, intron 1 of 5)	1463	NR_033829	642345		NR_033829	ENSG00000228824	MIR4500HG	-	MIR4500 host gene	ncRNA
118270	chr19	35269401	35270800	+	0	NA	intron (NM_003367, intron 4 of 9)	intron (NM_003367, intron 4 of 9)	1138	NM_207291	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
214258	chr7	148943221	148943700	+	0	NA	Intergenic	AluSz|SINE|Alu	1972	NR_001571	6090		NR_001571		RNY5	Y5|hY5	RNA, Ro60-associated Y5	ncRNA
96978	chr17	42263651	42264150	+	0	NA	intron (NM_012448, intron 1 of 18)	(CA)n|Simple_repeat|Simple_repeat	12491	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
95865	chr17	38847071	38847480	+	0	NA	TTS (NM_000978)	TTS (NM_000978)	4383	NR_145761	109617002		NR_145761	ENSG00000252699	SNORA21B	-	small nucleolar RNA, H/ACA box 21B	snoRNA
7331	chr1	32702751	32703800	+	0	NA	promoter-TSS (NM_001161708)	promoter-TSS (NM_001161708)	-505	NM_001161708	81493		NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
194188	chr6	32129101	32129500	+	0	NA	exon (NM_022110, exon 2 of 2).3	exon (NM_022110, exon 2 of 2).3	988	NM_022110	63943		NM_022110	ENSG00000204315	FKBPL	DIR1|NG7|WISP39	FKBP prolyl isomerase like	protein-coding
82786	chr16	21453771	21453930	+	0	NA	intron (NR_027155, intron 23 of 28)	intron (NR_027155, intron 23 of 28)	-19395	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
47612	chr12	6037901	6038380	+	0	NA	intron (NM_000552, intron 18 of 51)	intron (NM_000552, intron 18 of 51)	2043	NR_145989	109729112		NR_145989		SNORA120	-	small nucleolar RNA, H/ACA box 120	snoRNA
225710	chr9	36666051	36667100	+	0	NA	intron (NM_014791, intron 14 of 17)	intron (NM_014791, intron 14 of 17)	93680	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
87770	chr16	75305251	75305650	+	0	NA	intron (NM_006324, intron 5 of 6)	intron (NM_006324, intron 5 of 6)	-37443	NM_001170715	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
95890	chr17	38883551	38885030	+	0	NA	intron (NM_001271608, intron 2 of 5)	intron (NM_001271608, intron 2 of 5)	14232	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
54472	chr12	92021271	92021750	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	120203	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
121595	chr19	47381101	47381400	+	0	NA	exon (NM_014681, exon 16 of 17)	exon (NM_014681, exon 16 of 17)	31935	NM_014681	9704		NM_014681	ENSG00000134815	DHX34	DDX34|HRH1	DExH-box helicase 34	protein-coding
143057	chr20	21505991	21506930	+	0	NA	Intergenic	CpG	7604	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
103275	chr17	77776701	77776900	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-48241	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
137068	chr2	190903851	190904750	+	0	NA	intron (NM_014905, intron 5 of 17)	intron (NM_014905, intron 5 of 17)	23479	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
175048	chr4	53197271	53197450	+	0	NA	intron (NM_152540, intron 4 of 8)	intron (NM_152540, intron 4 of 8)	168701	NM_152540	152579		NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
22103	chr1	211642971	211643130	+	0	NA	intron (NR_131925, intron 2 of 2)	intron (NR_131925, intron 2 of 2)	3242	NR_131925	105748977		NR_131925	ENSG00000227764	NTRAS	LINC01693	non-coding transcript regulating alternative splicing	ncRNA
236215	chrX	65696121	65697250	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	29031	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
86321	chr16	65357101	65357350	+	0	NA	intron (NR_027755, intron 5 of 8)	L1PA3|LINE|L1	-180652	NR_110918	101927650		NR_110918	ENSG00000259847	LINC02126	-	long intergenic non-protein coding RNA 2126	ncRNA
50463	chr12	47751671	47751830	+	0	NA	exon (NM_001098531, exon 4 of 28)	exon (NM_001098531, exon 4 of 28)	6648	NM_001098532	10411		NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
80023	chr16	1940321	1940580	+	0	NA	intron (NM_001382265, intron 2 of 2)	MIRb|SINE|MIR	2749	NM_016332	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
179156	chr4	169756271	169756830	+	0	NA	intron (NM_017867, intron 1 of 7)	MIR|SINE|MIR	1394	NM_017867	54969		NM_017867	ENSG00000056050	HPF1	C4orf27	histone PARylation factor 1	protein-coding
21135	chr1	203660471	203660630	+	0	NA	intron (NM_001365784, intron 1 of 20)	AluSc|SINE|Alu	32613	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
184497	chr5	100872501	100872930	+	0	NA	intron (NM_005668, intron 3 of 4)	THE1C|LTR|ERVL-MaLR	30567	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
27749	chr10	35195401	35196900	+	0	NA	intron (NM_001352446, intron 1 of 2)	intron (NM_001352446, intron 1 of 2)	248	NM_182724	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
158039	chr22	49934001	49934700	+	0	NA	Intergenic	Intergenic	15716	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
161558	chr3	42700021	42700280	+	0	NA	intron (NM_020707, intron 2 of 11)	(TG)n|Simple_repeat|Simple_repeat	1371	NR_027753	57467		NM_020707	ENSG00000010282	HHATL	C3orf3|GUP1|MBOAT3|MSTP002|OACT3	hedgehog acyltransferase like	protein-coding
33850	chr10	124235251	124235350	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-141702	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
167170	chr3	128073321	128074000	+	0	NA	intron (NM_001319086, intron 9 of 9)	intron (NM_001319086, intron 9 of 9)	-2150	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
32330	chr10	102231601	102232750	+	0	NA	intron (NM_005029, intron 1 of 3)	intron (NM_005029, intron 1 of 3)	5876	NM_152310	83401		NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
188269	chr5	151095221	151095730	+	0	NA	Intergenic	Intergenic	-7790	NM_001252390	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
227527	chr9	91426171	91426680	+	0	NA	Intergenic	Intergenic	-1799	NM_001290000	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
75530	chr15	66603621	66603880	+	0	NA	intron (NR_110372, intron 1 of 4)	intron (NR_110372, intron 1 of 4)	21560	NR_110372	102723165		NR_110372	ENSG00000259471	LINC01169	-	long intergenic non-protein coding RNA 1169	ncRNA
138430	chr2	205885651	205885830	+	0	NA	Intergenic	Intergenic	200434	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
82318	chr16	15687871	15688430	+	0	NA	intron (NM_017668, intron 5 of 8)	AluJr|SINE|Alu	37905	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
91503	chr17	4939301	4941080	+	0	NA	promoter-TSS (NM_001320358)	promoter-TSS (NM_001320358)	-23	NM_001165417	8402		NM_003562	ENSG00000108528	SLC25A11	OGC|PGL6|PPGL6|SLC20A4	solute carrier family 25 member 11	protein-coding
202168	chr6	155327451	155327930	+	0	NA	Intergenic	Intergenic	-13206	NR_146725	51106		NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
26541	chr10	21525151	21526790	+	0	NA	promoter-TSS (NM_207371)	promoter-TSS (NM_207371)	-288	NM_207371	387640		NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
164343	chr3	58011701	58012100	+	0	NA	intron (NM_001164319, intron 1 of 44)	intron (NM_001164319, intron 1 of 44)	3478	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
84923	chr16	31232551	31232850	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-15565	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
164227	chr3	56930821	56931080	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	-9090	NR_046572	100874200		NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
49108	chr12	14766021	14766350	+	0	NA	Intergenic	LTR10C|LTR|ERV1	4946	NM_175054	121504		NM_175054	ENSG00000197837	H4C16	H4-16|H4/p|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST4H4	H4 histone 16	protein-coding
92535	chr17	8940121	8940330	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	25482	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
49460	chr12	25056451	25057500	+	0	NA	intron (NM_001204126, intron 1 of 19)	intron (NM_001204126, intron 1 of 19)	4269	NM_006152	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
13376	chr1	113925701	113926130	+	0	NA	intron (NR_110726, intron 2 of 2)	AluSx1|SINE|Alu	3343	NR_110725	101928846		NR_110725	ENSG00000235527	HIPK1-AS1	-	HIPK1 antisense RNA 1	ncRNA
203451	chr7	377951	378050	+	0	NA	Intergenic	MIRb|SINE|MIR	-1425	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
84892	chr16	31198601	31199180	+	0	NA	Intergenic	Intergenic	-2995	NR_102400	100652740		NR_102400	ENSG00000261359	PYCARD-AS1	C16orf98|PYCARDOS	PYCARD antisense RNA 1	ncRNA
8025	chr1	38042551	38042850	+	0	NA	Intergenic	Intergenic	4093	NM_002699	5453		NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
43775	chr11	86252901	86253250	+	0	NA	intron (NM_001330334, intron 3 of 9)	intron (NM_001330334, intron 3 of 9)	8322	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
184836	chr5	111497771	111497930	+	0	NA	non-coding (NR_131754, exon 5 of 5)	non-coding (NR_131754, exon 5 of 5)	-14376	NR_040093	100505678		NR_040093	ENSG00000246859	STARD4-AS1	-	STARD4 antisense RNA 1	ncRNA
30268	chr10	75144351	75144650	+	0	NA	intron (NM_144660, intron 1 of 4)	L1MB3|LINE|L1	32844	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
198621	chr6	107750101	107750500	+	0	NA	intron (NM_001286408, intron 1 of 6)	intron (NM_001286408, intron 1 of 6)	-18150	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
117595	chr19	21835351	21836530	+	0	NA	intron (NM_001256653, intron 1 of 3)	CpG	242	NM_001256654	7594		NM_003423	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
224392	chr9	13259521	13259600	+	0	NA	intron (NM_001375416, intron 1 of 45)	L2c|LINE|L2	20132	NM_001261406	8777		NM_003829	ENSG00000107186	MPDZ	HYC2|MUPP1	multiple PDZ domain crumbs cell polarity complex component	protein-coding
157515	chr22	45339751	45340050	+	0	NA	intron (NR_146323, intron 11 of 11)	intron (NR_146323, intron 11 of 11)	21457	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
3463	chr1	15946151	15946250	+	0	NA	exon (NM_001324137, exon 4 of 15)	exon (NM_001324137, exon 4 of 15)	29901	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
184511	chr5	100901701	100902700	+	0	NA	intron (NM_175052, intron 1 of 2)	intron (NM_175052, intron 1 of 2)	1082	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
82582	chr16	18788551	18788650	+	0	NA	intron (NM_001019, intron 2 of 4)	AluSx1|SINE|Alu	1734	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
44864	chr11	114180321	114181130	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	-77081	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
43614	chr11	83181721	83182050	+	0	NA	exon (NM_001346415, exon 13 of 16)	exon (NM_001346415, exon 13 of 16)	5599	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
81186	chr16	4478101	4479650	+	0	NA	intron (NM_001286268, intron 1 of 5).2	AluSq2|SINE|Alu	2477	NM_002134	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
49801	chr12	31964221	31964500	+	0	NA	intron (NM_018169, intron 2 of 5)	L1PA13|LINE|L1	4945	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
49495	chr12	25279671	25280330	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-29071	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
162523	chr3	48593171	48594330	+	0	NA	intron (NM_000094, intron 3 of 118)	intron (NM_000094, intron 3 of 118)	1579	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
93059	chr17	17478051	17478150	+	0	NA	intron (NM_018019, intron 1 of 1)	AluJb|SINE|Alu	1100	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
69918	chr14	99517121	99517680	+	0	NA	intron (NM_001144995, intron 3 of 5)	intron (NM_001144995, intron 3 of 5)	35991	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
187715	chr5	143388221	143388480	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	14933	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
90636	chr17	1657521	1658780	+	0	NA	intron (NM_006445, intron 34 of 42)	intron (NM_006445, intron 34 of 42)	-8284	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
202196	chr6	156422871	156423230	+	0	NA	Intergenic	LTR1F2|LTR|ERV1	44300	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
102690	chr17	76132321	76132580	+	0	NA	Intergenic	Intergenic	-8106	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
178571	chr4	151127101	151127400	+	0	NA	intron (NM_001378121, intron 20 of 20)	intron (NM_001378121, intron 20 of 20)	23423	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
2218	chr1	8825871	8826250	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-8420	NM_001042681	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
232808	chr9	136715501	136715900	+	0	NA	intron (NM_152421, intron 1 of 4)	AluSp|SINE|Alu	3128	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
164049	chr3	53495401	53495800	+	0	NA	intron (NM_001128839, intron 1 of 45)	CpG	989	NM_001128839	776		NM_000720	ENSG00000157388	CACNA1D	CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD	calcium voltage-gated channel subunit alpha1 D	protein-coding
101413	chr17	67389701	67389900	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSc8|SINE|Alu	12519	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
23290	chr1	228058801	228060600	+	0	NA	3' UTR (NM_033131, exon 4 of 4)	3' UTR (NM_033131, exon 4 of 4)	16850	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
67179	chr14	68819121	68819700	+	0	NA	Intergenic	Intergenic	-23167	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
136385	chr2	176124501	176125450	+	0	NA	TTS (NM_014213)	TTS (NM_014213)	2256	NM_014213	3235		NM_014213	ENSG00000128709	HOXD9	HOX4|HOX4C|Hox-4.3|Hox-5.2	homeobox D9	protein-coding
224143	chr9	4762451	4763250	+	0	NA	Intergenic	Intergenic	-20807	NM_001199853	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
238414	chrX	150581351	150581850	+	0	NA	intron (NM_001376908, intron 1 of 14)	intron (NM_001376908, intron 1 of 14)	12979	NM_000252	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
219117	chr8	65959551	65960330	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-55038	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
154711	chr22	36424401	36425000	+	0	NA	Intergenic	Intergenic	-36733	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
29818	chr10	72310821	72311080	+	0	NA	Intergenic	Intergenic	37026	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
114791	chr19	13779471	13779830	+	0	NA	TTS (NM_014047)	TTS (NM_014047)	5194	NM_014047	28974		NM_014047	ENSG00000104979	C19orf53	HSPC023|L10K|LYDG10	chromosome 19 open reading frame 53	protein-coding
97287	chr17	43128021	43128350	+	0	NA	intron (NR_003108, intron 1 of 4)	LTR12C|LTR|ERV1	2628	NR_138145	10230		NM_005821	ENSG00000198496	NBR2	NCRNA00192	neighbor of BRCA1 lncRNA 2	ncRNA
18762	chr1	167502551	167502650	+	0	NA	intron (NM_001378515, intron 1 of 8)	MLT1C|LTR|ERVL-MaLR	15929	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
144710	chr20	36501621	36501880	+	0	NA	intron (NM_001365621, intron 10 of 12)	intron (NM_001365621, intron 10 of 12)	-39769	NM_006097	10398		NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MMIHS4|MRLC1|MYRL2	myosin light chain 9	protein-coding
114460	chr19	12725151	12725450	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1368	NM_001382241	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
11825	chr1	92852421	92852680	+	0	NA	intron (NM_001252269, intron 1 of 3)	L1M7|LINE|L1	11831	NR_002444	26782		NR_002444	ENSG00000207523	SNORA66	RNU66|U66	small nucleolar RNA, H/ACA box 66	snoRNA
46123	chr11	122984021	122985280	+	0	NA	Intergenic	CpG	-2816	NM_001098169	390259		NM_001098169	ENSG00000188909	BSX	BSX1	brain specific homeobox	protein-coding
29111	chr10	68339951	68340600	+	0	NA	TTS (NR_103475)	TTS (NR_103475)	-7347	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
105408	chr17	82779971	82780130	+	0	NA	intron (NM_005993, intron 6 of 38)	intron (NM_005993, intron 6 of 38)	27985	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
231484	chr9	131371901	131372100	+	0	NA	Intergenic	Intergenic	-1651	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
23265	chr1	227891121	227891380	+	0	NA	Intergenic	Intergenic	50433	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
164192	chr3	56823771	56824330	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-22101	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
108483	chr18	70688321	70688580	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-37496	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
4972	chr1	24185451	24186200	+	0	NA	intron (NM_173065, intron 1 of 5)	MIRb|SINE|MIR	1464	NM_173064	163702		NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	interferon lambda receptor 1	protein-coding
42813	chr11	72821821	72823150	+	0	NA	exon (NM_001318766, exon 6 of 18)	exon (NM_001318766, exon 6 of 18)	8074	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
87934	chr16	79359101	79359330	+	0	NA	Intergenic	Intergenic	241522	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
46788	chr11	130090971	130091750	+	0	NA	intron (NM_001243299, intron 1 of 16)	SVA_F|Retroposon|SVA	20792	NM_001243299	334		NM_001642	ENSG00000084234	APLP2	APLP-2|APPH|APPL2|CDEBP	amyloid beta precursor like protein 2	protein-coding
216163	chr8	11704601	11704830	+	0	NA	promoter-TSS (NR_132779)	promoter-TSS (NR_132779)	513	NM_002052	2626		NM_002052	ENSG00000136574	GATA4	ASD2|TACHD|TOF|VSD1	GATA binding protein 4	protein-coding
189485	chr5	173099051	173099880	+	0	NA	intron (NM_153607, intron 4 of 8)	L1MA9|LINE|L1	43113	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
20632	chr1	199174371	199174530	+	0	NA	intron (NR_147896, intron 3 of 3)	intron (NR_147896, intron 3 of 3)	25852	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
9158	chr1	45548101	45548550	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2458	NM_001202413	10327		NM_006066	ENSG00000117448	AKR1A1	ALDR1|ALR|ARM|DD3|HEL-S-6	aldo-keto reductase family 1 member A1	protein-coding
137096	chr2	190947521	190948580	+	0	NA	intron (NM_014905, intron 14 of 17)	intron (NM_014905, intron 14 of 17)	66121	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
112822	chr19	7518771	7519250	+	0	NA	intron (NM_018083, intron 1 of 1)	AluSx1|SINE|Alu	2907	NM_018083	140467		NM_018083	ENSG00000198816	ZNF358	ZFEND	zinc finger protein 358	protein-coding
142263	chr20	3169651	3169750	+	0	NA	intron (NM_001282533, intron 1 of 5)	AluSz6|SINE|Alu	3849	NM_001365618	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
135137	chr2	157437171	157438600	+	0	NA	intron (NM_004288, intron 1 of 7)	L1MA5A|LINE|L1	6204	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
205139	chr7	7159071	7160100	+	0	NA	Intergenic	Intergenic	-22959	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
221874	chr8	128458651	128458950	+	0	NA	intron (NR_121672, intron 2 of 7)	L1HS|LINE|L1	105879	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
177276	chr4	109462151	109462450	+	0	NA	intron (NM_001300813, intron 2 of 24)	MLT1F2|LTR|ERVL-MaLR	-26398	NR_030302	693161		NR_030302	ENSG00000207988	MIR576	MIRN576|hsa-mir-576	microRNA 576	ncRNA
124993	chr2	9445001	9445400	+	0	NA	intron (NM_016207, intron 10 of 17)	L1MB5|LINE|L1	21546	NM_016207	51692		NM_016207	ENSG00000119203	CPSF3	CPSF-73|CPSF73|NEDMHS|NEDMHSN	cleavage and polyadenylation specific factor 3	protein-coding
235705	chrX	48854901	48855100	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-19390	NM_013271	27344		NM_013271	ENSG00000102109	PCSK1N	BigLEN|PEN|PROSAAS|SAAS|SCG8|SgVIII	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
169250	chr3	157155801	157156350	+	0	NA	intron (NM_001308185, intron 3 of 10)	intron (NM_001308185, intron 3 of 10)	4072	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
189618	chr5	176006101	176006500	+	0	NA	Intergenic	Intergenic	-37985	NM_032361	84321		NM_032361	ENSG00000051596	THOC3	THO3|hTREX45	THO complex subunit 3	protein-coding
159947	chr3	17179851	17180680	+	0	NA	intron (NM_001349090, intron 19 of 21)	intron (NM_001349090, intron 19 of 21)	247069	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
52855	chr12	57108751	57109250	+	0	NA	intron (NR_033659, intron 1 of 20)	AluY|SINE|Alu	1289	NM_001178079	6778		NM_003153	ENSG00000166888	STAT6	D12S1644|HIES6|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6	protein-coding
53335	chr12	64632501	64633300	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-10295	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
102946	chr17	76679471	76679630	+	0	NA	TTS (NM_198530)	TTS (NM_198530)	7622	NR_130916	105274304		NR_130916	ENSG00000261335	LOC105274304	-	uncharacterized LOC105274304	ncRNA
65285	chr14	50041521	50041780	+	0	NA	intron (NR_131171, intron 4 of 8)	intron (NR_131171, intron 4 of 8)	-34130	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
227370	chr9	89491851	89492450	+	0	NA	intron (NM_001371194, intron 1 of 15)	L2a|LINE|L2	3506	NM_001371198	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
126440	chr2	27988801	27989200	+	0	NA	intron (NM_199193, intron 5 of 13)	intron (NM_199193, intron 5 of 13)	-7367	NR_036230	100422965		NR_036230	ENSG00000265321	MIR4263	-	microRNA 4263	ncRNA
70559	chr14	102574871	102575030	+	0	NA	Intergenic	Intergenic	-17699	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
227845	chr9	93500501	93500700	+	0	NA	intron (NM_001286722, intron 5 of 17)	intron (NM_001286722, intron 5 of 17)	-46999	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
144567	chr20	35766271	35766630	+	0	NA	Intergenic	AluSq4|SINE|Alu	-5565	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
158333	chr22	50446571	50446730	+	0	NA	3' UTR (NM_001365819, exon 40 of 40)	3' UTR (NM_001365819, exon 40 of 40)	28385	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
121826	chr19	47954371	47954830	+	0	NA	Intergenic	AluSp|SINE|Alu	-1082	NR_024217	100170218		NR_024217		SNAR-C2	-	small NF90 (ILF3) associated RNA C2	snRNA
234696	chrX	20418271	20419350	+	0	NA	Intergenic	LTR50|LTR|ERVL	-151901	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
49286	chr12	19791951	19792290	+	0	NA	Intergenic	L1ME3A|LINE|L1	-222565	NR_040098	100506393		NR_040098	ENSG00000256287	LINC02398	-	long intergenic non-protein coding RNA 2398	ncRNA
7467	chr1	33098171	33098600	+	0	NA	intron (NM_001376724, intron 8 of 9)	L1ME4a|LINE|L1	16207	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
149975	chr21	36698651	36699080	+	0	NA	promoter-TSS (NM_009586)	promoter-TSS (NM_009586)	-250	NM_005069	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
150687	chr21	43663121	43663380	+	0	NA	intron (NM_015056, intron 1 of 15)	intron (NM_015056, intron 1 of 15)	3690	NM_015056	23076		NM_015056	ENSG00000160208	RRP1B	KIAA0179|NNP1L|Nnp1|PPP1R136|RRP1	ribosomal RNA processing 1B	protein-coding
116334	chr19	17843851	17844430	+	0	NA	intron (NM_000215, intron 2 of 23)	L2c|LINE|L2	3842	NM_000215	3718		NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
115866	chr19	16559351	16559650	+	0	NA	intron (NM_024881, intron 4 of 5)	(AC)n|Simple_repeat|Simple_repeat	12915	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
134190	chr2	134324801	134325200	+	0	NA	intron (NM_001371457, intron 5 of 16)	intron (NM_001371457, intron 5 of 16)	70928	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
206500	chr7	33190871	33191580	+	0	NA	intron (NR_145411, intron 5 of 23)	LTR55|LTR|ERVL?	61661	NM_198428	27241		NM_014451	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
194453	chr6	33174151	33174450	+	0	NA	intron (NM_080680, intron 31 of 65).6	MIR3|SINE|MIR	18167	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
126054	chr2	25587201	25587400	+	0	NA	intron (NM_001320935, intron 4 of 17)	intron (NM_001320935, intron 4 of 17)	62922	NM_001256308	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
116001	chr19	17112471	17112830	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	20415	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
67668	chr14	73122201	73122800	+	0	NA	3' UTR (NM_021239, exon 19 of 19)	3' UTR (NM_021239, exon 19 of 19)	-14007	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
195055	chr6	35499171	35499500	+	0	NA	intron (NM_001289395, intron 13 of 13)	MIR|SINE|MIR	-2256	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
209703	chr7	84093321	84093580	+	0	NA	intron (NM_006080, intron 4 of 16)	intron (NM_006080, intron 4 of 16)	101339	NM_006080	10371		NM_006080	ENSG00000075213	SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	semaphorin 3A	protein-coding
213529	chr7	139084301	139084680	+	0	NA	intron (NM_020119, intron 2 of 12)	intron (NM_020119, intron 2 of 12)	25230	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
98406	chr17	46588921	46589400	+	0	NA	Intergenic	Intergenic	-1509	NR_040116	4905		NM_006178	ENSG00000073969	NSF	DEE96|SEC18|SKD2	N-ethylmaleimide sensitive factor, vesicle fusing ATPase	protein-coding
54970	chr12	96307771	96307930	+	0	NA	intron (NM_002595, intron 5 of 16)	AluSz6|SINE|Alu	52352	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
49073	chr12	14420221	14420900	+	0	NA	intron (NM_181352, intron 1 of 14)	AluY|SINE|Alu	35279	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
81208	chr16	4501701	4502300	+	0	NA	intron (NM_001286267, intron 2 of 6)	intron (NM_001286267, intron 2 of 6)	6142	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
172129	chr4	1184201	1185230	+	0	NA	intron (NM_001199021, intron 1 of 7)	AluSx3|SINE|Alu	-11504	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
211435	chr7	105066651	105067150	+	0	NA	intron (NM_182931, intron 6 of 26)	intron (NM_182931, intron 6 of 26)	52695	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
95423	chr17	36101351	36101850	+	0	NA	Intergenic	L1PA15|LINE|L1	-2073	NR_111969	388372		NM_207007		CCL4L1	AT744.2|CCL4L|LAG-1|LAG1|MIP-1-beta|SCYA4L|SCYA4L1|SCYA4L2	C-C motif chemokine ligand 4 like 1	protein-coding
223894	chr9	296771	296930	+	0	NA	intron (NM_203447, intron 4 of 47)	intron (NM_203447, intron 4 of 47)	23802	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
218638	chr8	56929051	56929350	+	0	NA	Intergenic	Intergenic	64667	NM_017813	54928		NM_017813	ENSG00000104331	BPNT2	GPAPP|IMP 3|IMP-3|IMPA3|IMPAD1	3'(2'), 5'-bisphosphate nucleotidase 2	protein-coding
95375	chr17	35877871	35878820	+	0	NA	intron (NM_001278736, intron 2 of 3)	intron (NM_001278736, intron 2 of 3)	2015	NM_001278736	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
173487	chr4	9216371	9216530	+	0	NA	exon (NM_001256854, exon 1 of 1)	exon (NM_001256854, exon 1 of 1)	1045	NM_001256859	100287364		NM_001256859	ENSG00000250844	USP17L18	-	ubiquitin specific peptidase 17 like family member 18	protein-coding
20415	chr1	198198201	198198400	+	0	NA	intron (NM_133494, intron 1 of 9)	L1ME3|LINE|L1	41302	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
147339	chr20	58225771	58226130	+	0	NA	intron (NM_001304369, intron 1 of 3)	intron (NM_001304369, intron 1 of 3)	2703	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
132238	chr2	102368561	102369230	+	0	NA	intron (NM_001371421, intron 4 of 12)	intron (NM_001371421, intron 4 of 12)	12612	NM_001282399	8809		NM_003855	ENSG00000115604	IL18R1	CD218a|CDw218a|IL-18R-alpha|IL-18Ralpha|IL-1Rrp|IL18RA|IL18Ralpha2|IL1RRP	interleukin 18 receptor 1	protein-coding
94163	chr17	28370981	28372850	+	0	NA	5' UTR (NM_015077, exon 1 of 9)	5' UTR (NM_015077, exon 1 of 9)	221	NM_015077	23098		NM_015077	ENSG00000004139	SARM1	HsTIR|MyD88-5|SAMD2|SARM|hSARM1	sterile alpha and TIR motif containing 1	protein-coding
86091	chr16	57640601	57640800	+	0	NA	intron (NM_001290144, intron 1 of 13)	intron (NM_001290144, intron 1 of 13)	1208	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
208395	chr7	66690071	66690430	+	0	NA	intron (NM_001367745, intron 1 of 7)	AluSg7|SINE|Alu	8084	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
77386	chr15	82985551	82986630	+	0	NA	promoter-TSS (NM_031452)	promoter-TSS (NM_031452)	-120	NM_031452	83640		NM_031452	ENSG00000169612	RAMAC	C15orf18|FAM103A1|HsT19360|RAM|RAMMET	RNA guanine-7 methyltransferase activating subunit	protein-coding
209604	chr7	77625371	77625530	+	0	NA	intron (NM_001131008, intron 12 of 17)	AluJb|SINE|Alu	70815	NR_134254	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
35570	chr11	1685271	1685700	+	0	NA	non-coding (NR_026642, exon 1 of 3).5	non-coding (NR_026642, exon 1 of 3).5	144	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
58039	chr12	124456001	124456250	+	0	NA	intron (NM_001077261, intron 8 of 47)	AluJr|SINE|Alu	111487	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
116280	chr19	17725571	17726180	+	0	NA	exon (NM_018174, exon 5 of 7)	exon (NM_018174, exon 5 of 7)	5719	NM_001308363	55201		NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule associated protein 1S	protein-coding
154442	chr22	35370501	35370700	+	0	NA	Intergenic	MER50-int|LTR|ERV1	-10496	NM_002133	3162		NM_002133	ENSG00000100292	HMOX1	HMOX1D|HO-1|HSP32|bK286B10	heme oxygenase 1	protein-coding
100975	chr17	64536551	64537650	+	0	NA	exon (NM_001316990, exon 18 of 19)	exon (NM_001316990, exon 18 of 19)	30123	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
29450	chr10	70440801	70441930	+	0	NA	intron (NM_001329906, intron 1 of 2)	CpG	316	NM_018055	4838		NM_018055	ENSG00000156574	NODAL	HTX5	nodal growth differentiation factor	protein-coding
225548	chr9	35832621	35832880	+	0	NA	intron (NM_001363625, intron 1 of 4)	intron (NM_001363625, intron 1 of 4)	3522	NM_001042590	51754		NM_016446	ENSG00000137103	TMEM8B	C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6|NGX6a	transmembrane protein 8B	protein-coding
72370	chr15	31358271	31358430	+	0	NA	intron (NM_001302461, intron 1 of 1).3	L1MC|LINE|L1	31515	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
142686	chr20	7265821	7265900	+	0	NA	Intergenic	Intergenic	-11658	NR_110609	101929265		NR_110609	ENSG00000228888	LINC01428	-	long intergenic non-protein coding RNA 1428	ncRNA
182515	chr5	65104971	65105580	+	0	NA	Intergenic	L2c|LINE|L2	336345	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
139252	chr2	219396951	219397300	+	0	NA	intron (NM_001319116, intron 1 of 14)	MIR|SINE|MIR	2882	NM_001319116	23549		NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
80393	chr16	2556121	2556380	+	0	NA	intron (NM_031268, intron 1 of 10)	AluJb|SINE|Alu	18229	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
17153	chr1	156198651	156199700	+	0	NA	5' UTR (NM_001377390, exon 2 of 4)	5' UTR (NM_001377390, exon 2 of 4)	5071	NM_001286184	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
188137	chr5	150400721	150401350	+	0	NA	TTS (NM_001135245)	TTS (NM_001135245)	11721	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
196906	chr6	52350501	52350700	+	0	NA	Intergenic	Intergenic	-11551	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
177027	chr4	107035671	107035830	+	0	NA	5' UTR (NM_014421, exon 1 of 4)	5' UTR (NM_014421, exon 1 of 4)	563	NM_014421	27123		NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
50070	chr12	44815671	44816100	+	0	NA	intron (NM_001145108, intron 3 of 19)	intron (NM_001145108, intron 3 of 19)	59776	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
37015	chr11	12053371	12053530	+	0	NA	intron (NR_135109, intron 1 of 1)	intron (NR_135109, intron 1 of 1)	22575	NR_135109	105376554		NR_135109	ENSG00000254486	LINC02547	-	long intergenic non-protein coding RNA 2547	ncRNA
67377	chr14	69769651	69770100	+	0	NA	intron (NM_001039465, intron 5 of 7)	intron (NM_001039465, intron 5 of 7)	-2162	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
209954	chr7	92645521	92646180	+	0	NA	intron (NM_001145306, intron 5 of 7)	intron (NM_001145306, intron 5 of 7)	-55460	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
28402	chr10	47707401	47708050	+	0	NA	intron (NR_160661, intron 1 of 6)	L1PA16|LINE|L1	1664	NR_160660	439965		NR_027634		SHLD2P3	FAM35B2|FAM35DP	shieldin complex subunit 2 pseudogene 3	pseudo
236493	chrX	71702821	71703150	+	0	NA	non-coding (NR_034004, exon 3 of 3)	non-coding (NR_034004, exon 3 of 3)	5789	NR_034004	100132741		NR_034004		LOC100132741	-	uncharacterized LOC100132741	ncRNA
110799	chr19	2459151	2459250	+	0	NA	intron (NR_134931, intron 1 of 1)	LTR54B|LTR|ERV1	-2241	NM_032737	84823		NM_032737	ENSG00000176619	LMNB2	EPM9|LAMB2|LMN2|MCPH27	lamin B2	protein-coding
137404	chr2	196251101	196251500	+	0	NA	intron (NM_001348768, intron 19 of 28)	L2c|LINE|L2	-8724	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
150719	chr21	43736751	43737550	+	0	NA	intron (NM_003681, intron 2 of 10)	MER68B|LTR|ERVL	-4336	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
226257	chr9	67721351	67721680	+	0	NA	Intergenic	SST1|Satellite|centr	-2336	NR_103833	100131997		NR_103833	ENSG00000274026	FAM27E3	-	family with sequence similarity 27 member E3	ncRNA
66631	chr14	63840951	63841480	+	0	NA	Intergenic	Intergenic	-11789	NM_015180	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
22078	chr1	211379771	211380130	+	0	NA	Intergenic	L1MEd|LINE|L1	-2805	NR_026761	84791		NM_032705	ENSG00000153363	LINC00467	ASAP|C1orf97	long intergenic non-protein coding RNA 467	ncRNA
234940	chrX	38754071	38754380	+	0	NA	Intergenic	Intergenic	-47207	NM_001098791	58526		NM_021242	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
220428	chr8	100292051	100292500	+	0	NA	intron (NM_001280539, intron 2 of 10)	intron (NM_001280539, intron 2 of 10)	9918	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
24854	chr10	486651	486950	+	0	NA	intron (NM_014974, intron 1 of 36)	intron (NM_014974, intron 1 of 36)	-141764	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
196656	chr6	44307251	44307600	+	0	NA	intron (NM_020745, intron 5 of 21)	intron (NM_020745, intron 5 of 21)	5922	NM_020745	57505		NM_020745	ENSG00000124608	AARS2	AARSL|COXPD8|LKENP|MT-ALARS|MTALARS	alanyl-tRNA synthetase 2, mitochondrial	protein-coding
160041	chr3	18436401	18436800	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	2136	NM_001131010	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
83430	chr16	27267371	27267630	+	0	NA	promoter-TSS (NR_037184)	promoter-TSS (NR_037184)	-705	NR_037184	400512		NR_037184	ENSG00000245888	NSMCE1-DT	-	NSMCE1 divergent transcript	ncRNA
8077	chr1	39024451	39024750	+	0	NA	Intergenic	AluJo|SINE|Alu	-1695	NM_001184979	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
102979	chr17	76722971	76723730	+	0	NA	intron (NM_015167, intron 3 of 5)	intron (NM_015167, intron 3 of 5)	-2691	NM_001378349	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
42449	chr11	69322371	69322530	+	0	NA	Intergenic	(TGGTGG)n|Simple_repeat|Simple_repeat	28295	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
232977	chr9	136974851	136975280	+	0	NA	Intergenic	Intergenic	-2439	NM_000954	5730		NM_000954	ENSG00000107317	PTGDS	L-PGDS|LPGDS|PDS|PGD2|PGDS|PGDS2	prostaglandin D2 synthase	protein-coding
65496	chr14	51880821	51881600	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	20598	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
137172	chr2	191122101	191122500	+	0	NA	intron (NM_003151, intron 3 of 23)	L1ME3|LINE|L1	28694	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
53213	chr12	62277321	62277780	+	0	NA	intron (NM_001351164, intron 1 of 21)	Tigger3b|DNA|TcMar-Tigger	17146	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
181101	chr5	36938271	36938830	+	0	NA	intron (NM_133433, intron 1 of 46)	intron (NM_133433, intron 1 of 46)	61781	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
15262	chr1	149638671	149639750	+	0	NA	intron (NR_111950, intron 1 of 8)	intron (NR_111950, intron 1 of 8)	32198	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
125082	chr2	9692721	9693650	+	0	NA	Intergenic	Intergenic	-62188	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
178820	chr4	153534821	153535080	+	0	NA	intron (NM_015196, intron 3 of 34)	L2a|LINE|L2	68590	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
39502	chr11	61037801	61038200	+	0	NA	Intergenic	Charlie2b|DNA|hAT-Charlie	-55963	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
96824	chr17	41958921	41959180	+	0	NA	intron (NM_031421, intron 10 of 11)	MER3|DNA|hAT-Charlie	-7745	NM_033133	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
180519	chr5	14413251	14414880	+	0	NA	intron (NR_134469, intron 33 of 56)	intron (NR_134469, intron 33 of 56)	-49918	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
64954	chr14	35940301	35940530	+	0	NA	Intergenic	Intergenic	114077	NM_032352	84312		NM_032352	ENSG00000100916	BRMS1L	BRMS1|p40	BRMS1 like transcriptional repressor	protein-coding
167723	chr3	131020371	131020730	+	0	NA	intron (NM_001288950, intron 3 of 6)	MIR|SINE|MIR	6275	NM_014065	28990		NM_014065	ENSG00000034533	ASTE1	HT001	asteroid homolog 1	protein-coding
38550	chr11	45914821	45915080	+	0	NA	intron (NM_057174, intron 5 of 10)	intron (NM_057174, intron 5 of 10)	2927	NM_057174	9409		NM_004813	ENSG00000121680	PEX16	PBD8A|PBD8B	peroxisomal biogenesis factor 16	protein-coding
205267	chr7	8174871	8175350	+	0	NA	intron (NR_146926, intron 6 of 13)	intron (NR_146926, intron 6 of 13)	87057	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
35621	chr11	1781671	1781830	+	0	NA	Intergenic	Intergenic	-17823	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
135269	chr2	159774901	159775380	+	0	NA	intron (NM_014880, intron 5 of 5)	L2a|LINE|L2	23068	NM_014880	9936		NM_014880	ENSG00000241399	CD302	BIMLEC|CLEC13A|DCL-1|DCL1	CD302 molecule	protein-coding
31629	chr10	97385801	97386300	+	0	NA	intron (NM_015179, intron 8 of 33)	intron (NM_015179, intron 8 of 33)	15290	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
177249	chr4	108703001	108703200	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	52501	NM_001267818	58505		NM_021227	ENSG00000198856	OSTC	DC2	oligosaccharyltransferase complex non-catalytic subunit	protein-coding
189992	chr5	177462101	177463130	+	0	NA	promoter-TSS (NM_001364152)	promoter-TSS (NM_001364152)	-189	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
21514	chr1	205773501	205773700	+	0	NA	intron (NM_001135664, intron 1 of 4)	AluJb|SINE|Alu	1882	NM_001135663	8934		NM_003929	ENSG00000117280	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
152715	chr22	21650251	21650550	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-1781	NR_169730	107985532		NR_169729		LOC107985532	-	uncharacterized LOC107985532	pseudo
112795	chr19	7487271	7487580	+	0	NA	intron (NM_001300881, intron 1 of 4)	intron (NM_001300881, intron 1 of 4)	1610	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
113544	chr19	10198451	10199400	+	0	NA	Intergenic	L1MB2|LINE|L1	-3972	NM_001130823	1786		NM_001379	ENSG00000130816	DNMT1	ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI	DNA methyltransferase 1	protein-coding
43255	chr11	75534501	75535300	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-8959	NM_030792	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
11599	chr1	91596451	91596750	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	95492	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
34294	chr10	131964901	131965400	+	0	NA	Intergenic	Intergenic	16863	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
15591	chr1	150583751	150584230	+	0	NA	Intergenic	AluSx|SINE|Alu	-4252	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
5584	chr1	25999421	25999830	+	0	NA	Intergenic	Intergenic	-1562	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
155818	chr22	39331171	39331330	+	0	NA	Intergenic	Intergenic	-11627	NM_001033853	6122		NM_000967	ENSG00000100316	RPL3	ASC-1|L3|TARBP-B|uL3	ribosomal protein L3	protein-coding
115898	chr19	16588301	16589280	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-16375	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
225989	chr9	41271671	41272100	+	0	NA	Intergenic	L1M4|LINE|L1	-38050	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
68785	chr14	91202351	91202850	+	0	NA	intron (NM_001102369, intron 13 of 14)	intron (NM_001102369, intron 13 of 14)	42104	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
105064	chr17	82086571	82086880	+	0	NA	intron (NM_004104, intron 21 of 42)	intron (NM_004104, intron 21 of 42)	3415	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
76682	chr15	75731071	75732000	+	0	NA	intron (NR_024595, intron 4 of 4)	intron (NR_024595, intron 4 of 4)	7494	NM_175881	161753		NM_175881	ENSG00000182950	CIMAP1C	ODF3L1	ciliary microtubule associated protein 1C	protein-coding
185430	chr5	131163351	131163730	+	0	NA	intron (NR_024610, intron 1 of 3)	intron (NR_024610, intron 1 of 3)	1716	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
234668	chrX	20204251	20204600	+	0	NA	intron (NM_004586, intron 3 of 21)	intron (NM_004586, intron 3 of 21)	62484	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
40898	chr11	65133811	65136200	+	0	NA	promoter-TSS (NM_032431)	promoter-TSS (NM_032431)	-486	NM_032431	84447		NM_032431	ENSG00000162298	SYVN1	DER3|HRD1	synoviolin 1	protein-coding
216310	chr8	12674921	12675230	+	0	NA	Intergenic	Intergenic	-9464	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
202072	chr6	154241051	154241650	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	88731	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
60054	chr13	32941551	32941650	+	0	NA	Intergenic	L2c|LINE|L2	-29948	NR_047020	100874167		NR_047020		LINC00423	-	long intergenic non-protein coding RNA 423	ncRNA
228071	chr9	96219471	96220030	+	0	NA	Intergenic	CpG	-26713	NR_146524	105376162		NR_146524	ENSG00000232283	HSD17B3-AS1	-	HSD17B3 antisense RNA 1	ncRNA
98355	chr17	46344251	46344550	+	0	NA	intron (NM_001039083, intron 3 of 3).5	MER3|DNA|hAT-Charlie	17366	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
151803	chr22	18203121	18203480	+	0	NA	intron (NR_136570, intron 1 of 11)	HSATI|Satellite|Satellite	2609	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
33418	chr10	118701051	118701150	+	0	NA	intron (NM_153810, intron 5 of 8)	intron (NM_153810, intron 5 of 8)	53870	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
164076	chr3	53938701	53938930	+	0	NA	Intergenic	Intergenic	-46956	NM_021237	58515		NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
147033	chr20	53610901	53611100	+	0	NA	intron (NR_134576, intron 1 of 2)	AluY|SINE|Alu	2646	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
170125	chr3	183284851	183284950	+	0	NA	intron (NM_015078, intron 14 of 29)	intron (NM_015078, intron 14 of 29)	31647	NM_032047	84002		NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
222727	chr8	141386501	141387500	+	0	NA	Intergenic	Intergenic	-5021	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
60542	chr13	41462501	41464500	+	0	NA	intron (NM_014059, intron 2 of 4)	(TG)n|Simple_repeat|Simple_repeat	5950	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
101295	chr17	66421701	66421900	+	0	NA	intron (NM_002737, intron 2 of 16)	AluSx1|SINE|Alu	-4946	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
92114	chr17	7587801	7588000	+	0	NA	TTS (NM_006942)	TTS (NM_006942)	2194	NM_006942	6665		NM_006942	ENSG00000129194	SOX15	SOX20|SOX26|SOX27	SRY-box transcription factor 15	protein-coding
172994	chr4	4256871	4257030	+	0	NA	Intergenic	Intergenic	-8708	NM_032927	85013		NM_032927	ENSG00000132406	TMEM128	-	transmembrane protein 128	protein-coding
168432	chr3	142568571	142568930	+	0	NA	intron (NM_001184, intron 1 of 46)	MER52D|LTR|ERV1	9983	NM_001354579	545		NM_001184	ENSG00000175054	ATR	FCTCS|FRP1|MEC1|SCKL|SCKL1	ATR serine/threonine kinase	protein-coding
73228	chr15	41661511	41662550	+	0	NA	intron (NM_001164273, intron 1 of 23)	CpG	1618	NM_001080541	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
167624	chr3	129586071	129586230	+	0	NA	intron (NM_015103, intron 4 of 35)	intron (NM_015103, intron 4 of 35)	20526	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
40191	chr11	62922821	62923450	+	0	NA	Intergenic	Intergenic	-1772	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
184164	chr5	95731051	95732100	+	0	NA	5' UTR (NM_014899, exon 1 of 12)	5' UTR (NM_014899, exon 1 of 12)	239	NM_014899	22836		NM_014899	ENSG00000164292	RHOBTB3	-	Rho related BTB domain containing 3	protein-coding
39405	chr11	60837121	60837780	+	0	NA	Intergenic	L3|LINE|CR1	-4663	NM_024098	79080		NM_024098	ENSG00000110104	CCDC86	Cgr1	coiled-coil domain containing 86	protein-coding
39891	chr11	62501271	62502180	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	43939	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
203549	chr7	885301	886300	+	0	NA	intron (NM_015949, intron 1 of 8)	intron (NM_015949, intron 1 of 8)	9246	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
128347	chr2	54881801	54882000	+	0	NA	intron (NM_001039753, intron 16 of 40)	intron (NM_001039753, intron 16 of 40)	128372	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133547	chr2	120345921	120346330	+	0	NA	promoter-TSS (NM_002193)	promoter-TSS (NM_002193)	-11	NM_002193	3625		NM_002193	ENSG00000163083	INHBB	-	inhibin subunit beta B	protein-coding
163790	chr3	52397501	52397700	+	0	NA	intron (NM_015512, intron 73 of 77)	intron (NM_015512, intron 73 of 77)	12408	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
27597	chr10	32460721	32461180	+	0	NA	intron (NR_109826, intron 4 of 16)	intron (NR_109826, intron 4 of 16)	14810	NR_109827	79741		NM_024688	ENSG00000216937	CCDC7	BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68	coiled-coil domain containing 7	protein-coding
180752	chr5	32128971	32129430	+	0	NA	intron (NM_022130, intron 3 of 3)	intron (NM_022130, intron 3 of 3)	45119	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
47736	chr12	6492421	6493500	+	0	NA	exon (NM_016497, exon 2 of 3)	exon (NM_016497, exon 2 of 3)	302	NM_016497	51258		NM_016497	ENSG00000111639	MRPL51	CDA09|HSPC241|MRP64|bMRP64|mL51	mitochondrial ribosomal protein L51	protein-coding
43534	chr11	82775801	82776000	+	0	NA	Intergenic	L1M1|LINE|L1	-42036	NM_175885	220382		NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
3451	chr1	15934351	15935450	+	0	NA	exon (NM_015001, exon 11 of 15)	exon (NM_015001, exon 11 of 15)	41201	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
222671	chr8	141208601	141209030	+	0	NA	3' UTR (NM_001286646, exon 9 of 9)	3' UTR (NM_001286646, exon 9 of 9)	19759	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
208672	chr7	73213921	73214350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6504	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
129933	chr2	73739771	73739930	+	0	NA	Intergenic	MER70-int|LTR|ERVL	-2444	NM_001330387	51002		NM_016058	ENSG00000144034	TPRKB	CGI-121|CGI121|GAMOS5	TP53RK binding protein	protein-coding
56672	chr12	119998671	119999030	+	0	NA	intron (NR_147893, intron 2 of 10)	AluJr|SINE|Alu	9006	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
128223	chr2	54073971	54074230	+	0	NA	intron (NM_001320586, intron 4 of 6)	AluJr4|SINE|Alu	-41515	NM_001320590	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
143112	chr20	23398701	23398900	+	0	NA	intron (NM_001283018, intron 2 of 10)	AluSx1|SINE|Alu	22688	NR_104266	63908		NM_022080	ENSG00000125814	NAPB	DEE107|SNAP-BETA|SNAPB	NSF attachment protein beta	protein-coding
92774	chr17	15682571	15683360	+	0	NA	promoter-TSS (NM_006470)	promoter-TSS (NM_006470)	-14	NM_006470	10626		NM_006470	ENSG00000221926	TRIM16	EBBP	tripartite motif containing 16	protein-coding
121922	chr19	48441771	48441930	+	0	NA	exon (NM_000836, exon 12 of 14)	exon (NM_000836, exon 12 of 14)	-4133	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
235711	chrX	48900751	48900850	+	0	NA	intron (NM_144495, intron 2 of 5)	AluJr|SINE|Alu	2308	NM_001167992	10084		NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
162158	chr3	46973471	46973930	+	0	NA	intron (NM_144716, intron 2 of 7)	AluY|SINE|Alu	2801	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
115962	chr19	16892601	16893050	+	0	NA	TTS (NM_003950)	TTS (NM_003950)	3826	NM_003950	9002		NM_003950	ENSG00000127533	F2RL3	PAR4	F2R like thrombin or trypsin receptor 3	protein-coding
17335	chr1	156477951	156479030	+	0	NA	intron (NM_001271629, intron 6 of 10)	intron (NM_001271629, intron 6 of 10)	12197	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
39198	chr11	57481401	57482050	+	0	NA	Intergenic	Intergenic	21197	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
92615	chr17	10050701	10051180	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-14283	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
163461	chr3	50613401	50614680	+	0	NA	intron (NM_001243926, intron 3 of 12)	intron (NM_001243926, intron 3 of 12)	2178	NM_001243926	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
193699	chr6	31126501	31126700	+	0	NA	intron (NM_014068, intron 2 of 5).5	intron (NM_014068, intron 2 of 5).5	-6154	NM_001264	1041		NM_001264	ENSG00000204539	CDSN	HTSS|HTSS1|HYPT2|PSS|PSS1	corneodesmosin	protein-coding
212974	chr7	130973351	130973450	+	0	NA	intron (NR_109851, intron 4 of 5)	L1M3|LINE|L1	59936	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
93580	chr17	19111701	19112300	+	0	NA	TTS (NR_006882)	TTS (NR_006882)	636	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
169132	chr3	155886401	155886600	+	0	NA	intron (NM_003875, intron 1 of 15)	AluSx3|SINE|Alu	15850	NM_003875	8833		NM_003875	ENSG00000163655	GMPS	GATD7	guanine monophosphate synthase	protein-coding
201568	chr6	149323021	149323280	+	0	NA	intron (NM_015093, intron 1 of 8)	intron (NM_015093, intron 1 of 8)	4850	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
131772	chr2	98478771	98479250	+	0	NA	intron (NM_001351429, intron 1 of 23)	MER5A1|DNA|hAT-Charlie	33000	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
187701	chr5	143362221	143362680	+	0	NA	intron (NR_157096, intron 1 of 7)	AluY|SINE|Alu	40833	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
33385	chr10	117546001	117546200	+	0	NA	intron (NM_004098, intron 2 of 2)	intron (NM_004098, intron 2 of 2)	-1032	NR_002791	196047		NR_002791	ENSG00000229847	EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
75610	chr15	67119071	67119630	+	0	NA	intron (NM_005902, intron 1 of 8)	L2c|LINE|L2	-6366	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
8011	chr1	38010321	38010600	+	0	NA	Intergenic	Intergenic	-2274	NM_016037	51118		NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11 small subunit processome component	protein-coding
154705	chr22	36409671	36410630	+	0	NA	Intergenic	CpG	-22183	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
189868	chr5	177301521	177301980	+	0	NA	exon (NM_001031677, exon 8 of 8)	exon (NM_001031677, exon 8 of 8)	1969	NM_001031677	53917		NM_130781	ENSG00000169228	RAB24	-	RAB24, member RAS oncogene family	protein-coding
15802	chr1	151286221	151287100	+	0	NA	exon (NM_001304764, exon 2 of 9)	exon (NM_001304764, exon 2 of 9)	4361	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
105681	chr18	2653521	2653780	+	0	NA	intron (NR_033754, intron 1 of 1)	intron (NR_033754, intron 1 of 1)	1745	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
18996	chr1	169466271	169466600	+	0	NA	intron (NM_001319667, intron 4 of 4)	intron (NM_001319667, intron 4 of 4)	-5766	NM_001300968	57821		NM_021179	ENSG00000117477	CCDC181	C1orf114	coiled-coil domain containing 181	protein-coding
54603	chr12	92540071	92541600	+	0	NA	Intergenic	Intergenic	74156	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
2129	chr1	8316701	8317150	+	0	NA	Intergenic	L2a|LINE|L2	-1189	NM_001379614	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
107391	chr18	46093601	46094000	+	0	NA	intron (NM_004046, intron 2 of 11)	AluSx|SINE|Alu	4496	NM_004046	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
119731	chr19	41225401	41227100	+	0	NA	promoter-TSS (NM_001278599)	promoter-TSS (NM_001278599)	-505	NM_001278599	558		NM_001699	ENSG00000167601	AXL	ARK|AXL3|JTK11|Tyro7|UFO	AXL receptor tyrosine kinase	protein-coding
83231	chr16	23841571	23841730	+	0	NA	intron (NM_212535, intron 2 of 16)	AluSx|SINE|Alu	5667	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
60445	chr13	41010221	41011050	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	8681	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
73016	chr15	40763351	40764700	+	0	NA	promoter-TSS (NM_005258)	promoter-TSS (NM_005258)	-43	NM_005258	2644		NM_005258	ENSG00000137880	GCHFR	GFRP|HsT16933|P35	GTP cyclohydrolase I feedback regulator	protein-coding
41363	chr11	65972901	65973230	+	0	NA	intron (NM_005146, intron 12 of 19)	AluY|SINE|Alu	11331	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
206033	chr7	26866971	26867330	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2560	NM_003930	8935		NM_003930	ENSG00000005020	SKAP2	PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R	src kinase associated phosphoprotein 2	protein-coding
221029	chr8	116694621	116695530	+	0	NA	intron (NM_003756, intron 2 of 7)	AluSz6|SINE|Alu	42975	NR_136278	105375713		NR_136278	ENSG00000289382	LOC105375713	-	uncharacterized LOC105375713	ncRNA
161123	chr3	38375601	38375800	+	0	NA	intron (NR_146068, intron 9 of 16)	intron (NR_146068, intron 9 of 16)	28915	NM_001349178	9942		NM_005108	ENSG00000093217	XYLB	-	xylulokinase	protein-coding
55497	chr12	104763251	104763750	+	0	NA	Intergenic	Intergenic	171867	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
196802	chr6	45970471	45970630	+	0	NA	intron (NM_001370649, intron 1 of 5)	intron (NM_001370649, intron 1 of 5)	-32953	NR_045673	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
120177	chr19	42258671	42259080	+	0	NA	Intergenic	AluYk4|SINE|Alu	-3747	NM_001312656	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
215069	chr7	154039571	154040000	+	0	NA	intron (NR_157195, intron 1 of 24)	intron (NR_157195, intron 1 of 24)	-12613	NM_130797	1804		NM_001936	ENSG00000130226	DPP6	DPL1|DPPX|MRD33|VF2	dipeptidyl peptidase like 6	protein-coding
190270	chr5	179345121	179345580	+	0	NA	5' UTR (NM_021599, exon 1 of 11)	5' UTR (NM_021599, exon 1 of 11)	111	NM_014244	9509		NM_014244	ENSG00000087116	ADAMTS2	ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI	ADAM metallopeptidase with thrombospondin type 1 motif 2	protein-coding
5591	chr1	26032501	26033330	+	0	NA	intron (NM_004455, intron 7 of 10)	MIRb|SINE|MIR	11140	NM_004455	2134		NM_004455	ENSG00000158008	EXTL1	EXTL	exostosin like glycosyltransferase 1	protein-coding
52380	chr12	55715771	55717350	+	0	NA	non-coding (NR_037656, exon 1 of 4)	non-coding (NR_037656, exon 1 of 4)	268	NR_037657	2647		NM_001487	ENSG00000135441	BLOC1S1	BLOS1|BORCS1|GCN5L1|MICoA|RT14	biogenesis of lysosomal organelles complex 1 subunit 1	protein-coding
219052	chr8	65790901	65791100	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	-1943	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
201596	chr6	149353471	149353630	+	0	NA	intron (NM_001369506, intron 2 of 7)	intron (NM_001369506, intron 2 of 7)	35250	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
209260	chr7	75892621	75893280	+	0	NA	Intergenic	Intergenic	13916	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
56225	chr12	111723121	111723380	+	0	NA	intron (NM_025247, intron 8 of 20)	SVA_F|Retroposon|SVA	37197	NM_001136538	80724		NM_025247	ENSG00000111271	ACAD10	-	acyl-CoA dehydrogenase family member 10	protein-coding
195423	chr6	36914121	36914680	+	0	NA	exon (NM_001286637, exon 5 of 9)	exon (NM_001286637, exon 5 of 9)	28448	NM_152734	221477		NM_152734	ENSG00000198663	C6orf89	BRAP|PS1TP5TP1	chromosome 6 open reading frame 89	protein-coding
19870	chr1	183481301	183481500	+	0	NA	intron (NM_001174061, intron 1 of 21)	L2c|LINE|L2	8901	NM_001375585	9887		NM_014837	ENSG00000116698	SMG7	C1orf16|EST1C|SGA56M	SMG7 nonsense mediated mRNA decay factor	protein-coding
194025	chr6	31826171	31828600	+	0	NA	promoter-TSS (NM_005346).2	promoter-TSS (NM_005346).2	-353	NM_005346	3304		NM_005346	ENSG00000204388	HSPA1B	HSP70-1|HSP70-1B|HSP70-2|HSP70.1|HSP70.2|HSP72|HSPA1|HSX70	heat shock protein family A (Hsp70) member 1B	protein-coding
200693	chr6	137291501	137291730	+	0	NA	Intergenic	L2a|LINE|L2	-72230	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
203988	chr7	1741671	1742370	+	0	NA	intron (NR_120508, intron 1 of 1)	intron (NR_120508, intron 1 of 1)	290	NR_120509	101927125		NR_120508	ENSG00000236081	ELFN1-AS1	MYCLo-2	ELFN1 antisense RNA 1	ncRNA
236080	chrX	56765421	56766130	+	0	NA	intron (NM_001348129, intron 2 of 2)	(TCC)n|Simple_repeat|Simple_repeat	-28191	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
189896	chr5	177340851	177340950	+	0	NA	intron (NM_006816, intron 2 of 7)	AluY|SINE|Alu	10768	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
82296	chr16	15605751	15606050	+	0	NA	intron (NM_001184998, intron 21 of 26).2	intron (NM_001184998, intron 21 of 26).2	5195	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
147500	chr20	59170751	59171800	+	0	NA	intron (NM_178457, intron 1 of 5)	LTR41B|LTR|ERVL	7454	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
20388	chr1	198163471	198164900	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	7187	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
36667	chr11	8167951	8168050	+	0	NA	intron (NR_144485, intron 1 of 9)	L3|LINE|CR1	1025	NM_001206672	79608		NM_024557	ENSG00000166405	RIC3	AYST720|PRO1385|RIC-3	RIC3 acetylcholine receptor chaperone	protein-coding
229332	chr9	120901701	120902200	+	0	NA	TTS (NM_001190947)	TTS (NM_001190947)	-7054	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
148086	chr20	63296821	63298250	+	0	NA	intron (NM_020882, intron 2 of 35)	intron (NM_020882, intron 2 of 35)	4349	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
57376	chr12	121800591	121801400	+	0	NA	intron (NR_152738, intron 3 of 4)	CpG	1951	NR_152738	338799		NM_178538	ENSG00000212694	LINC01089	LIMT	long intergenic non-protein coding RNA 1089	ncRNA
190543	chr5	180718621	180719050	+	0	NA	Intergenic	Intergenic	21223	NM_001001657	134083		NM_001001657	ENSG00000174339	OR2Y1	OR5-2	olfactory receptor family 2 subfamily Y member 1	protein-coding
103524	chr17	78486271	78486430	+	0	NA	exon (NM_173628, exon 45 of 81)	exon (NM_173628, exon 45 of 81)	1440	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
54069	chr12	76034801	76035230	+	0	NA	Intergenic	Intergenic	-3239	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
14474	chr1	144491751	144492330	+	0	NA	Intergenic	Intergenic	-30371	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
84429	chr16	30382111	30383550	+	0	NA	promoter-TSS (NM_001365977)	promoter-TSS (NM_001365977)	-15	NM_052838	1731		NM_052838	ENSG00000180096	SEPTIN1	DIFF6|LARP|PNUTL3|SEP1|SEPT1|Septin-1	septin 1	protein-coding
215363	chr7	157392301	157392500	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	55396	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
168997	chr3	152426221	152426730	+	0	NA	intron (NM_207295, intron 3 of 8)	intron (NM_207295, intron 3 of 8)	-85485	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
157501	chr22	45329171	45329330	+	0	NA	intron (NR_146323, intron 7 of 11)	L1ME4c|LINE|L1	10807	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
221323	chr8	123065401	123066150	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-6932	NM_001363152	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
98133	chr17	45907201	45907450	+	0	NA	intron (NR_165166, intron 1 of 9)	intron (NR_165166, intron 1 of 9)	11542	NR_024560	100130148		NR_024560	ENSG00000279685	MAPT-IT1	-	MAPT intronic transcript 1	ncRNA
20512	chr1	198668951	198669880	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	30375	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
136337	chr2	175207651	175208350	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-26290	NM_001002258	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
206339	chr7	30322201	30323750	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-33085	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
70080	chr14	100158671	100158830	+	0	NA	intron (NM_206918, intron 1 of 2)	intron (NM_206918, intron 1 of 2)	895	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
141016	chr2	238165271	238165430	+	0	NA	intron (NM_001291832, intron 6 of 7)	intron (NM_001291832, intron 6 of 7)	6380	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
184505	chr5	100895401	100895800	+	0	NA	intron (NM_175052, intron 2 of 2)	intron (NM_175052, intron 2 of 2)	7682	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
221247	chr8	122638901	122639480	+	0	NA	Intergenic	Intergenic	54916	NR_126348	104266958		NR_126348		LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA
191646	chr6	13355101	13356680	+	0	NA	Intergenic	Intergenic	-27307	NM_001143964	51256		NM_016495	ENSG00000145979	TBC1D7	MGCPH|PIG51|TBC7	TBC1 domain family member 7	protein-coding
182386	chr5	61182521	61182780	+	0	NA	intron (NR_109908, intron 3 of 3)	intron (NR_109908, intron 3 of 3)	-20182	NM_001048249	643155		NM_001048249	ENSG00000188725	SMIM15	C5orf43	small integral membrane protein 15	protein-coding
176421	chr4	89257451	89257950	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	50100	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
29251	chr10	69106421	69107080	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-17403	NM_001035260	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
61052	chr13	48246871	48247230	+	0	NA	intron (NM_021999, intron 1 of 5)	AluSc5|SINE|Alu	13844	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
191990	chr6	16215371	16215830	+	0	NA	Intergenic	Intergenic	-22987	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
81161	chr16	4421771	4421930	+	0	NA	Intergenic	MIR|SINE|MIR	-3955	NM_001286516	9093		NM_005147	ENSG00000103423	DNAJA3	HCA57|TID1|Tid1-L|Tid1-S|hTID-1	DnaJ heat shock protein family (Hsp40) member A3	protein-coding
85169	chr16	46788271	46788680	+	0	NA	Intergenic	L1MA7|LINE|L1	-25229	NM_001308301	91807		NM_182493	ENSG00000140795	MYLK3	MLCK|MLCK2|caMLCK	myosin light chain kinase 3	protein-coding
133825	chr2	127864351	127864850	+	0	NA	3' UTR (NM_001199140, exon 8 of 8)	3' UTR (NM_001199140, exon 8 of 8)	-6445	NM_004805	5433		NM_004805	ENSG00000144231	POLR2D	HSRBP4|HSRPB4|RBP4|RPB16|RPB4	RNA polymerase II subunit D	protein-coding
200794	chr6	137891521	137892150	+	0	NA	Intergenic	L1PA7|LINE|L1	-23602	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
236201	chrX	65678521	65678800	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	11006	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
117407	chr19	19622351	19622730	+	0	NA	Intergenic	MIRb|SINE|MIR	-3853	NR_038198	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
121044	chr19	45819851	45821130	+	0	NA	intron (NM_004819, intron 22 of 26)	intron (NM_004819, intron 22 of 26)	-5182	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
119959	chr19	41883801	41884700	+	0	NA	promoter-TSS (NM_199002)	promoter-TSS (NM_199002)	-193	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
5468	chr1	25640901	25641500	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	24409	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
187639	chr5	143006471	143006830	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-137740	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
3185	chr1	13714701	13715200	+	0	NA	intron (NM_015866, intron 1 of 8)	intron (NM_015866, intron 1 of 8)	10095	NM_012231	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
36378	chr11	3972051	3972350	+	0	NA	intron (NM_001382568, intron 2 of 11)	intron (NM_001382568, intron 2 of 11)	116138	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
212038	chr7	114940701	114940900	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	18646	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
189437	chr5	172940951	172941250	+	0	NA	intron (NM_001031711, intron 9 of 9)	AluSz6|SINE|Alu	-17629	NM_001317981	51121		NM_016093	ENSG00000037241	RPL26L1	RPL26P1	ribosomal protein L26 like 1	protein-coding
50969	chr12	49552871	49553030	+	0	NA	intron (NM_001314030, intron 10 of 14)	L3b|LINE|CR1	13489	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
90516	chr17	1469321	1469680	+	0	NA	intron (NM_001080779, intron 25 of 31)	intron (NM_001080779, intron 25 of 31)	-13268	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
81868	chr16	11664471	11665600	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-3420	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
61544	chr13	60398871	60399480	+	0	NA	intron (NM_001146070, intron 1 of 13)	intron (NM_001146070, intron 1 of 13)	1955	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
4601	chr1	22086001	22086200	+	0	NA	intron (NM_044472, intron 3 of 5)	AluSx|SINE|Alu	33391	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
135185	chr2	158189751	158189850	+	0	NA	intron (NM_001301684, intron 9 of 11)	L2b|LINE|L2	23150	NR_038850	554201		NR_038850	ENSG00000227480	CCDC148-AS1	-	CCDC148 antisense RNA 1	ncRNA
28505	chr10	50262421	50262960	+	0	NA	Intergenic	L1PA4|LINE|L1	-11174	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
12641	chr1	109217821	109218700	+	0	NA	TTS (NR_034072)	TTS (NR_034072)	4342	NM_006513	6301		NM_006513	ENSG00000031698	SARS1	NEDMAS|SARS|SERRS|SERS	seryl-tRNA synthetase 1	protein-coding
119609	chr19	40763821	40764450	+	0	NA	intron (NM_004596, intron 5 of 5)	L1ME3B|LINE|L1	-11025	NM_001202553	8190		NM_006533	ENSG00000261857	MIA	CD-RAP|MIA1	MIA SH3 domain containing	protein-coding
127075	chr2	37546401	37546680	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	125102	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
74980	chr15	63891001	63891780	+	0	NA	Intergenic	Intergenic	-20371	NR_029944	494334		NR_029944	ENSG00000199156	MIR422A	MIRN422A	microRNA 422a	ncRNA
158206	chr22	50254971	50256930	+	0	NA	intron (NM_001303252, intron 6 of 10)	intron (NM_001303252, intron 6 of 10)	-4685	NM_001159286	83933		NM_032019	ENSG00000100429	HDAC10	HD10	histone deacetylase 10	protein-coding
34743	chr10	133781601	133782080	+	0	NA	Intergenic	MER92-int|LTR|ERV1	-155045	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
39356	chr11	59557031	59558230	+	0	NA	Intergenic	AluSq2|SINE|Alu	37528	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
222358	chr8	133564951	133565980	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	6422	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
150552	chr21	43087051	43087500	+	0	NA	Intergenic	Intergenic	-10332	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
87047	chr16	68291251	68292130	+	0	NA	intron (NM_001076785, intron 8 of 11)	intron (NM_001076785, intron 8 of 11)	19256	NM_032178	84138		NM_032178	ENSG00000103061	SLC7A6OS	EPM12|Iwr1	solute carrier family 7 member 6 opposite strand	protein-coding
169964	chr3	179195721	179196680	+	0	NA	intron (NM_006218, intron 1 of 20)	intron (NM_006218, intron 1 of 20)	47843	NM_006218	5290		NM_006218	ENSG00000121879	PIK3CA	CCM4|CLAPO|CLOVE|CWS5|HMH|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding
109183	chr19	360471	360630	+	0	NA	Intergenic	CpG	15476	NM_199202	51298		NM_016585	ENSG00000105549	SPMAP2	CT56|THEG|THEG1	sperm microtubule associated protein 2	protein-coding
149318	chr21	29026271	29026850	+	0	NA	intron (NM_001032410, intron 2 of 18)	FLAM_C|SINE|Alu	1892	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
211487	chr7	105149451	105149550	+	0	NA	intron (NM_182691, intron 6 of 14)	LTR5A|LTR|ERVK	119577	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
180880	chr5	33859021	33859480	+	0	NA	intron (NM_030955, intron 2 of 23)	L1PA7|LINE|L1	32740	NM_001324511	81792		NM_030955	ENSG00000151388	ADAMTS12	PRO4389	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein-coding
66511	chr14	61715721	61715980	+	0	NA	intron (NR_144368, intron 2 of 2)	AluJo|SINE|Alu	18228	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
217296	chr8	27374521	27375230	+	0	NA	intron (NM_173174, intron 6 of 35)	MIR3|SINE|MIR	49311	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
173435	chr4	8222971	8223750	+	0	NA	intron (NM_001318480, intron 10 of 17)	intron (NM_001318480, intron 10 of 17)	24070	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
29948	chr10	73481321	73481650	+	0	NA	intron (NM_001289969, intron 1 of 12)	(AT)n|Simple_repeat|Simple_repeat	-14267	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
171529	chr3	196698271	196698430	+	0	NA	Intergenic	AluSp|SINE|Alu	13900	NM_001379468	84984		NM_032898	ENSG00000174007	CEP19	C3orf34|MOSPGF	centrosomal protein 19	protein-coding
239114	chrY	11294921	11295180	+	0	NA	Intergenic	Intergenic	1126540	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
218417	chr8	47600521	47601180	+	0	NA	intron (NM_001352944, intron 7 of 13)	intron (NM_001352944, intron 7 of 13)	-53238	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
150635	chr21	43396171	43396400	+	0	NA	Intergenic	Intergenic	30846	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
193970	chr6	31711671	31711830	+	0	NA	TTS (NR_024541)	TTS (NR_024541)	2315	NR_003673	79136		NM_024123		LY6G6E	C6orf22|G6e	lymphocyte antigen 6 family member G6E (pseudogene)	pseudo
121450	chr19	47040151	47040450	+	0	NA	intron (NM_002517, intron 8 of 11)	AluSz|SINE|Alu	4983	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
85367	chr16	50270521	50270850	+	0	NA	intron (NM_001114, intron 1 of 25)	MIRb|SINE|MIR	4134	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
224675	chr9	21128201	21128580	+	0	NA	Intergenic	L1PA7|LINE|L1	13511	NM_002177	3467		NM_002177	ENSG00000177047	IFNW1	-	interferon omega 1	protein-coding
140183	chr2	231664971	231665550	+	0	NA	Intergenic	Intergenic	-43265	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
67719	chr14	73471801	73472530	+	0	NA	Intergenic	MIRb|SINE|MIR	-8523	NR_135251	101928143		NR_135251	ENSG00000284930	LOC101928143	-	uncharacterized LOC101928143	ncRNA
108090	chr18	61764371	61764730	+	0	NA	Intergenic	Intergenic	16374	NR_103449	100996669		NR_103449		LINC01544	-	long intergenic non-protein coding RNA 1544	ncRNA
218591	chr8	55879551	55880680	+	0	NA	intron (NM_002350, intron 1 of 12)	CpG	280	NM_001111097	4067		NM_002350	ENSG00000254087	LYN	JTK8|SAIDV|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
184932	chr5	112975901	112977370	+	0	NA	promoter-TSS (NM_001242377)	promoter-TSS (NM_001242377)	-163	NM_001242377	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
100318	chr17	59834551	59835450	+	0	NA	intron (NM_001329395, intron 11 of 12)	AluSx1|SINE|Alu	-6266	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
85678	chr16	56362771	56363130	+	0	NA	exon (NM_001323512, exon 15 of 15)	exon (NM_001323512, exon 15 of 15)	62039	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
142700	chr20	8152271	8152430	+	0	NA	intron (NM_015192, intron 2 of 31)	intron (NM_015192, intron 2 of 31)	20084	NM_182734	23236		NM_015192	ENSG00000182621	PLCB1	DEE12|EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B	phospholipase C beta 1	protein-coding
14732	chr1	145984321	145985080	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	11044	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
17213	chr1	156266721	156266980	+	0	NA	intron (NM_001323616, intron 11 of 22)	FLAM_C|SINE|Alu	15975	NM_015327	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
62528	chr13	99541821	99542230	+	0	NA	intron (NM_004800, intron 9 of 16)	AluSx1|SINE|Alu	-35087	NR_126390	104355149		NR_126390		LINC01039	-	long intergenic non-protein coding RNA 1039	ncRNA
181115	chr5	37242251	37242350	+	0	NA	intron (NM_001384732, intron 6 of 52)	AluSx3|SINE|Alu	-6746	NR_134263	105374727		NR_134263	ENSG00000286193	CPLANE1-AS1	-	CPLANE1 antisense RNA 1	ncRNA
163338	chr3	50416501	50416700	+	0	NA	intron (NM_006030, intron 3 of 37)	intron (NM_006030, intron 3 of 37)	51237	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
16416	chr1	154496801	154497400	+	0	NA	intron (NR_135169, intron 2 of 5)	intron (NR_135169, intron 2 of 5)	-5119	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
136831	chr2	182867101	182867300	+	0	NA	promoter-TSS (NM_001463)	promoter-TSS (NM_001463)	-563	NM_001463	2487		NM_001463	ENSG00000162998	FRZB	FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ	frizzled related protein	protein-coding
21353	chr1	204791801	204792080	+	0	NA	Intergenic	Intergenic	-36712	NM_001378329	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
29771	chr10	72260101	72262130	+	0	NA	Intergenic	CpG	-12809	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
12010	chr1	95297671	95297830	+	0	NA	Intergenic	L1PA3|LINE|L1	20513	NR_135588	100996630		NR_135588	ENSG00000228504	LINC01760	-	long intergenic non-protein coding RNA 1760	ncRNA
115134	chr19	14381901	14383300	+	0	NA	intron (NM_001025160, intron 1 of 18)	AluJo|SINE|Alu	1156	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
8143	chr1	39332151	39332450	+	0	NA	intron (NM_012090, intron 35 of 92)	intron (NM_012090, intron 35 of 92)	-76773	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
152701	chr22	21635121	21635580	+	0	NA	exon (NM_001331066, exon 4 of 4)	exon (NM_001331066, exon 4 of 4)	2553	NM_001331066	164592		NM_152612	ENSG00000161180	CCDC116	-	coiled-coil domain containing 116	protein-coding
155668	chr22	39027221	39027780	+	0	NA	intron (NM_152426, intron 4 of 6)	intron (NM_152426, intron 4 of 6)	6373	NM_152426	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
136516	chr2	177246971	177247130	+	0	NA	intron (NM_001313902, intron 1 of 3)	L1ME4b|LINE|L1	8960	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
23491	chr1	228642401	228642680	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-2107	NR_037962	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
166989	chr3	125913901	125914100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2601	NR_024251	100125556		NR_024250	ENSG00000291071	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
23805	chr1	234368321	234368930	+	0	NA	Intergenic	Intergenic	4778	NR_125962	101927765		NR_125961	ENSG00000231663	COA6-AS1	-	COA6 antisense RNA 1	ncRNA
188185	chr5	150560801	150561380	+	0	NA	Intergenic	Intergenic	-39986	NM_001166208	11346		NM_007286	ENSG00000171992	SYNPO	SYNPO1	synaptopodin	protein-coding
203576	chr7	913351	913450	+	0	NA	intron (NM_006869, intron 4 of 10)	AluY|SINE|Alu	7489	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
234818	chrX	24152171	24152680	+	0	NA	intron (NM_001330327, intron 2 of 10)	AluSx1|SINE|Alu	2696	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
42943	chr11	73538321	73538830	+	0	NA	intron (NM_015159, intron 1 of 7)	intron (NM_015159, intron 1 of 7)	59537	NM_001286050	23201		NM_015159	ENSG00000054965	FAM168A	KIAA0280|TCRP1	family with sequence similarity 168 member A	protein-coding
110508	chr19	2059521	2059980	+	0	NA	Intergenic	Intergenic	-8506	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
223138	chr8	143500101	143500630	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	5883	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
30101	chr10	73960721	73961280	+	0	NA	Intergenic	AluY|SINE|Alu	-37116	NM_014000	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
22436	chr1	220271701	220272840	+	0	NA	exon (NM_012414, exon 1 of 35)	exon (NM_012414, exon 1 of 35)	183	NM_012414	25782		NM_012414	ENSG00000118873	RAB3GAP2	MARTS1|RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating non-catalytic protein subunit 2	protein-coding
157386	chr22	44730971	44731330	+	0	NA	intron (NM_181334, intron 4 of 14)	intron (NM_181334, intron 4 of 14)	-21408	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
198777	chr6	108847921	108849030	+	0	NA	promoter-TSS (NM_032131)	promoter-TSS (NM_032131)	53	NM_032131	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
76338	chr15	74425571	74425730	+	0	NA	intron (NM_001146029, intron 1 of 12)	MER54A|LTR|ERVL	8054	NM_001146030	8482		NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|PFIC11|SEMAK1|SEMAL	semaphorin 7A (JohnMiltonHagen blood group)	protein-coding
63905	chr14	21912401	21912600	+	0	NA	Intergenic	MER83|LTR|ERV1	-241483	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
48834	chr12	12356421	12358800	+	0	NA	promoter-TSS (NR_024061)	promoter-TSS (NR_024061)	532	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
182501	chr5	64767121	64767380	+	0	NA	intron (NM_173829, intron 1 of 4)	L2b|LINE|L2	1441	NM_173829	285672		NM_173829	ENSG00000153006	SREK1IP1	P18SRP|SFRS12IP1	SREK1 interacting protein 1	protein-coding
53153	chr12	57901151	57901450	+	0	NA	Intergenic	AluY|SINE|Alu	-4818	NR_148947	283387		NR_148947	ENSG00000245651	LOC283387	-	uncharacterized LOC283387	ncRNA
3866	chr1	16975151	16975650	+	0	NA	intron (NM_001135248, intron 7 of 8)	intron (NM_001135248, intron 7 of 8)	5220	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
148534	chr20	64118401	64119130	+	0	NA	Intergenic	(GGCGG)n|Simple_repeat|Simple_repeat	-11200	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
192021	chr6	16424271	16424430	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	185763	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
88658	chr16	85651771	85652130	+	0	NA	intron (NM_001278184, intron 2 of 14)	intron (NM_001278184, intron 2 of 14)	37004	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
30808	chr10	84540251	84541380	+	0	NA	Intergenic	CpG	115646	NM_001284242	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
178456	chr4	148060551	148061580	+	0	NA	intron (NM_024605, intron 20 of 22)	intron (NM_024605, intron 20 of 22)	278470	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
133792	chr2	127782301	127782500	+	0	NA	intron (NM_001006623, intron 1 of 7)	intron (NM_001006623, intron 1 of 7)	28771	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
43115	chr11	75174701	75175000	+	0	NA	intron (NM_007256, intron 7 of 13)	intron (NM_007256, intron 7 of 13)	15018	NM_001145211	11309		NM_007256	ENSG00000137491	SLCO2B1	OATP-B|OATP2B1|OATPB|SLC21A9	solute carrier organic anion transporter family member 2B1	protein-coding
98880	chr17	48555321	48556200	+	0	NA	intron (NM_001384750, intron 1 of 3)	intron (NM_001384750, intron 1 of 3)	-10729	NM_002145	3212		NM_002145	ENSG00000173917	HOXB2	HOX2|HOX2H|Hox-2.8|K8	homeobox B2	protein-coding
99737	chr17	50919201	50920830	+	0	NA	Intergenic	Intergenic	-52037	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
49261	chr12	19478051	19478350	+	0	NA	intron (NM_153207, intron 3 of 7)	L1PB2|LINE|L1	37601	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
215110	chr7	155318171	155318330	+	0	NA	Intergenic	(TCATCA)n|Simple_repeat|Simple_repeat	20372	NM_005542	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
107897	chr18	56869171	56869450	+	0	NA	intron (NM_052834, intron 19 of 26)	intron (NM_052834, intron 19 of 26)	202809	NR_048536	100885779		NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR|lincRNA-ST8SIA3	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
237899	chrX	131752471	131752700	+	0	NA	intron (NR_152876, intron 7 of 9)	intron (NR_152876, intron 7 of 9)	78058	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
44204	chr11	96293471	96294000	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-47703	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
155696	chr22	39084721	39085380	+	0	NA	intron (NM_001349436, intron 5 of 7)	intron (NM_001349436, intron 5 of 7)	7775	NM_001349438	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
26030	chr10	12351501	12352600	+	0	NA	intron (NM_153498, intron 1 of 10)	MIR|SINE|MIR	2503	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
115616	chr19	16078201	16079800	+	0	NA	intron (NM_001367838, intron 1 of 8)	intron (NM_001367838, intron 1 of 8)	1984	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
155940	chr22	39678451	39678750	+	0	NA	intron (NM_001003406, intron 30 of 35)	intron (NM_001003406, intron 30 of 35)	107847	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
191679	chr6	13483401	13483600	+	0	NA	intron (NM_001242629, intron 1 of 1)	intron (NM_001242629, intron 1 of 1)	2683	NM_001242628	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
69848	chr14	99252621	99254430	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	18672	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
84501	chr16	30497901	30498250	+	0	NA	intron (NM_002209, intron 15 of 30)	intron (NM_002209, intron 15 of 30)	-5844	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
75041	chr15	64153421	64154480	+	0	NA	exon (NM_024798, exon 6 of 7)	exon (NM_024798, exon 6 of 7)	2219	NM_024798	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
71049	chr14	104793701	104794600	+	0	NA	promoter-TSS (NM_005163)	promoter-TSS (NM_005163)	-549	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
107436	chr18	46221021	46221280	+	0	NA	intron (NM_001008239, intron 2 of 3)	AluJb|SINE|Alu	47116	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
92432	chr17	8440571	8440930	+	0	NA	intron (NM_001025579, intron 1 of 9)	CR1_Mam|LINE|CR1	4866	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
165257	chr3	73152601	73153000	+	0	NA	Intergenic	LTR12|LTR|ERV1	91141	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
89564	chr16	89253951	89254450	+	0	NA	Intergenic	L1MCa|LINE|L1	36497	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
21634	chr1	206608051	206608830	+	0	NA	intron (NM_001201478, intron 3 of 12)	intron (NM_001201478, intron 3 of 12)	4025	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
11747	chr1	92030971	92031130	+	0	NA	intron (NM_173567, intron 1 of 6)	intron (NM_173567, intron 1 of 6)	1065	NM_173567	253152		NM_173567	ENSG00000172031	EPHX4	ABHD7|EH4|EPHXRP	epoxide hydrolase 4	protein-coding
156095	chr22	40067701	40067900	+	0	NA	intron (NM_001024843, intron 1 of 23)	MLT2B3|LTR|ERVL	22983	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
102842	chr17	76474251	76474350	+	0	NA	intron (NR_164787, intron 12 of 18)	intron (NR_164787, intron 12 of 18)	6697	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
128841	chr2	63839921	63841200	+	0	NA	promoter-TSS (NM_001377526)	promoter-TSS (NM_001377526)	-409	NM_001377528	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
116015	chr19	17127571	17127930	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	35515	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
217268	chr8	27333071	27333700	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	7821	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
95929	chr17	38922651	38923300	+	0	NA	Intergenic	Intergenic	-2193	NR_038847	100505576		NM_001414697	ENSG00000263874	LASP1NB	LINC00672	LASP1 neighbor	protein-coding
91921	chr17	7319771	7320330	+	0	NA	intron (NM_032442, intron 21 of 28)	AluY|SINE|Alu	-4690	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
230522	chr9	128338051	128338500	+	0	NA	Intergenic	Intergenic	-2252	NM_005094	10999		NM_005094	ENSG00000167114	SLC27A4	ACSVL4|FATP4|IPS	solute carrier family 27 member 4	protein-coding
200288	chr6	132797721	132799750	+	0	NA	promoter-TSS (NM_052831)	promoter-TSS (NM_052831)	-98	NM_052831	116843		NM_052831	ENSG00000146409	SLC18B1	C6orf192|VPAT|dJ55C23.6	solute carrier family 18 member B1	protein-coding
49592	chr12	27179771	27179930	+	0	NA	Intergenic	Intergenic	-64436	NM_015000	23012		NM_015000	ENSG00000211455	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
38089	chr11	35205671	35205830	+	0	NA	intron (NM_001001389, intron 9 of 16)	intron (NM_001001389, intron 9 of 16)	42800	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
123409	chr19	53991171	53991330	+	0	NA	promoter-TSS (NM_031897)	promoter-TSS (NM_031897)	101	NR_102308	59285		NM_031897	ENSG00000130433	CACNG6	-	calcium voltage-gated channel auxiliary subunit gamma 6	protein-coding
48017	chr12	6936351	6937100	+	0	NA	exon (NM_001940, exon 5 of 10)	exon (NM_001940, exon 5 of 10)	-6713	NM_001301836	113246		NM_138425	ENSG00000111678	C12orf57	C10|GRCC10	chromosome 12 open reading frame 57	protein-coding
112926	chr19	7676301	7676900	+	0	NA	promoter-TSS (NM_174918)	promoter-TSS (NM_174918)	-457	NM_174918	199675		NM_174918	ENSG00000183019	MCEMP1	C19orf59	mast cell expressed membrane protein 1	protein-coding
82485	chr16	17345871	17346230	+	0	NA	intron (NM_022166, intron 2 of 11)	AluSx|SINE|Alu	124910	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
166548	chr3	115165301	115165930	+	0	NA	Intergenic	Intergenic	-18327	NM_001348803	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
152639	chr22	21516151	21516530	+	0	NA	intron (NR_003700, intron 1 of 16)	intron (NR_003700, intron 1 of 16)	1151	NR_003700	375133		NR_003700	ENSG00000293427	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
69141	chr14	92548471	92548630	+	0	NA	intron (NM_024832, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	-27684	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
235442	chrX	46279321	46279780	+	0	NA	Intergenic	Intergenic	48124	NR_110388	101927574		NR_110388		LINC01186	ZNF674-1	long intergenic non-protein coding RNA 1186	ncRNA
139130	chr2	218995021	218995300	+	0	NA	Intergenic	MIRb|SINE|MIR	-1738	NM_057094	1412		NM_057093	ENSG00000163499	CRYBA2	CTRCT42	crystallin beta A2	protein-coding
92254	chr17	7988321	7989060	+	0	NA	Intergenic	Intergenic	-13925	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
77361	chr15	82808951	82810650	+	0	NA	exon (NM_001080435, exon 1 of 10)	exon (NM_001080435, exon 1 of 10)	172	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
161770	chr3	44969901	44970200	+	0	NA	intron (NM_001135179, intron 1 of 6)	intron (NM_001135179, intron 1 of 6)	6124	NR_146162	51304		NM_016598	ENSG00000163812	ZDHHC3	DHHC-3|DHHC3|GODZ|ZNF373	zinc finger DHHC-type palmitoyltransferase 3	protein-coding
145941	chr20	46032051	46032150	+	0	NA	intron (NM_020708, intron 1 of 25)	intron (NM_020708, intron 1 of 25)	2885	NM_020708	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
495	chr1	1178721	1178980	+	0	NA	promoter-TSS (NM_153254)	promoter-TSS (NM_153254)	-831	NM_153254	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
13881	chr1	119008421	119008800	+	0	NA	Intergenic	CpG	-7205	NR_135035	105378933		NR_135034	ENSG00000226172	LOC105378933	-	uncharacterized LOC105378933	ncRNA
134058	chr2	131460751	131460930	+	0	NA	Intergenic	CpG	-15279	NM_080386	113457		NM_080386	ENSG00000075886	TUBA3D	H2-ALPHA|KTCN9|TUBA2	tubulin alpha 3d	protein-coding
146076	chr20	47508271	47508630	+	0	NA	intron (NM_181659, intron 1 of 22)	intron (NM_181659, intron 1 of 22)	6563	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
138918	chr2	218167921	218168180	+	0	NA	Intergenic	L2c|LINE|L2	-1088	NM_000634	3577		NM_000634	ENSG00000163464	CXCR1	C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA	C-X-C motif chemokine receptor 1	protein-coding
35975	chr11	2855601	2855800	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	5869	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
36868	chr11	10455651	10456880	+	0	NA	5' UTR (NM_001025390, exon 1 of 15)	5' UTR (NM_001025390, exon 1 of 15)	209	NM_001025390	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
238070	chrX	136056851	136057230	+	0	NA	Intergenic	Intergenic	71605	NM_006359	10479		NM_006359	ENSG00000198689	SLC9A6	MRSA|MRXSCH|NHE6	solute carrier family 9 member A6	protein-coding
205654	chr7	22826701	22827100	+	0	NA	Intergenic	MER66B|LTR|ERV1	-4051	NR_168014	54543		NM_019059	ENSG00000196683	TOMM7	GMPGS|TOM7	translocase of outer mitochondrial membrane 7	protein-coding
223249	chr8	143637471	143637630	+	0	NA	intron (NM_001082480, intron 1 of 1)	(TATT)n|Simple_repeat|Simple_repeat	1388	NM_001082480	9831		NM_014789	ENSG00000183309	ZNF623	-	zinc finger protein 623	protein-coding
81378	chr16	5033101	5034430	+	0	NA	promoter-TSS (NR_038913)	promoter-TSS (NR_038913)	63	NR_038913	100507589		NR_038913		NAGPA-AS1	-	NAGPA antisense RNA 1	ncRNA
95205	chr17	35239771	35240500	+	0	NA	Intergenic	Intergenic	-2937	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
108523	chr18	74356901	74357130	+	0	NA	3' UTR (NM_001174123, exon 14 of 14)	3' UTR (NM_001174123, exon 14 of 14)	41176	NM_001174123	644041		NM_001174123	ENSG00000206043	C18orf63	DKFZP781G0119	chromosome 18 open reading frame 63	protein-coding
179119	chr4	168879551	168879850	+	0	NA	intron (NM_001166110, intron 2 of 11)	intron (NM_001166110, intron 2 of 11)	47605	NM_001367570	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
231524	chr9	131426651	131426950	+	0	NA	intron (NM_013318, intron 1 of 31)	MER20B|DNA|hAT-Charlie	32714	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
135202	chr2	159036101	159036300	+	0	NA	intron (NM_001350064, intron 2 of 26)	intron (NM_001350064, intron 2 of 26)	67560	NR_146421	85461		NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
25653	chr10	8330971	8333530	+	0	NA	Intergenic	Intergenic	-63945	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
87110	chr16	68629571	68629730	+	0	NA	Intergenic	Intergenic	-15660	NM_001317196	1001		NM_001793	ENSG00000062038	CDH3	CDHP|HJMD|PCAD	cadherin 3	protein-coding
36161	chr11	3148871	3149230	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	16260	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
74482	chr15	59994921	59995380	+	0	NA	Intergenic	(GGTCCT)n|Simple_repeat|Simple_repeat	-9161	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
6150	chr1	27395021	27396730	+	0	NA	TTS (NM_005281)	TTS (NM_005281)	3253	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
114629	chr19	12987251	12988180	+	0	NA	Intergenic	Intergenic	-7760	NM_002501	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
131988	chr2	100381201	100381580	+	0	NA	Intergenic	Intergenic	36278	NM_004854	9486		NM_004854	ENSG00000115526	CHST10	HNK-1ST|HNK1ST	carbohydrate sulfotransferase 10	protein-coding
205904	chr7	25179671	25180900	+	0	NA	promoter-TSS (NM_138811)	promoter-TSS (NM_138811)	69	NM_001371351	136895		NM_138811	ENSG00000153790	SPMIP4	C7orf31	sperm microtubule inner protein 4	protein-coding
13188	chr1	112617501	112618500	+	0	NA	intron (NM_138729, intron 1 of 13)	intron (NM_138729, intron 1 of 13)	1141	NM_138727	54879		NM_017744	ENSG00000007341	ST7L	FAM4B|ST7R|STLR	suppression of tumorigenicity 7 like	protein-coding
154936	chr22	37225201	37226030	+	0	NA	3' UTR (NM_002872, exon 7 of 7)	3' UTR (NM_002872, exon 7 of 7)	-13138	NM_001051	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
8685	chr1	41981221	41981630	+	0	NA	intron (NR_038261, intron 1 of 3)	intron (NR_038261, intron 1 of 3)	54509	NR_038261	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
133596	chr2	121736161	121737580	+	0	NA	promoter-TSS (NM_032390)	promoter-TSS (NM_032390)	5	NM_032390	84365		NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
128396	chr2	55063301	55063800	+	0	NA	intron (NM_001321904, intron 2 of 9)	L2a|LINE|L2	-12278	NM_001321859	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
220976	chr8	115420851	115420950	+	0	NA	intron (NM_001282903, intron 5 of 6)	MIR|SINE|MIR	247113	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
56136	chr12	111073351	111073650	+	0	NA	intron (NM_015267, intron 1 of 21)	L1ME3A|LINE|L1	-26504	NM_001370598	23316		NM_015267	ENSG00000111249	CUX2	CDP2|CUTL2|DEE67|EIEE67	cut like homeobox 2	protein-coding
193858	chr6	31552421	31552750	+	0	NA	intron (NM_001144962, intron 2 of 3).3	AluSc8|SINE|Alu	4977	NM_005007	4795		NM_005007	ENSG00000204498	NFKBIL1	IKBL|NFKBIL	NFKB inhibitor like 1	protein-coding
77003	chr15	78441971	78442400	+	0	NA	intron (NM_001320942, intron 2 of 21)	AluSz6|SINE|Alu	3764	NM_001320942	3658		NM_004136	ENSG00000136381	IREB2	ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA	iron responsive element binding protein 2	protein-coding
12147	chr1	100134351	100134450	+	0	NA	intron (NM_019083, intron 1 of 10)	intron (NM_019083, intron 1 of 10)	1250	NR_135078	54482		NM_019083	ENSG00000122435	TRMT13	CCDC76	tRNA methyltransferase 13 homolog	protein-coding
215228	chr7	156827671	156827830	+	0	NA	intron (NR_146958, intron 3 of 14)	intron (NR_146958, intron 3 of 14)	65433	NM_001363412	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
13723	chr1	116798951	116799900	+	0	NA	Intergenic	Intergenic	44995	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
37138	chr11	13384851	13385450	+	0	NA	intron (NR_147787, intron 18 of 19)	intron (NR_147787, intron 18 of 19)	55129	NM_001297742	84280		NM_032320	ENSG00000148925	BTBD10	GMRP-1|GMRP1	BTB domain containing 10	protein-coding
67207	chr14	68932571	68932930	+	0	NA	intron (NM_001130004, intron 1 of 21)	MER20|DNA|hAT-Charlie	46552	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
19395	chr1	174144001	174144430	+	0	NA	intron (NR_121197, intron 3 of 3)	L1PA7|LINE|L1	15072	NR_121197	102724601		NR_121197	ENSG00000227373	RABGAP1L-DT	-	RABGAP1L divergent transcript	ncRNA
221268	chr8	122793451	122793550	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	11845	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
199005	chr6	110979801	110980630	+	0	NA	Intergenic	L1MB7|LINE|L1	-1802	NM_001289111	84154		NM_032194	ENSG00000197498	RPF2	BXDC1|bA397G5.4	ribosome production factor 2 homolog	protein-coding
205753	chr7	23511551	23511650	+	0	NA	intron (NM_001362759, intron 3 of 6)	intron (NM_001362759, intron 3 of 6)	20381	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
63229	chr13	113908151	113908450	+	0	NA	intron (NR_164112, intron 3 of 7)	intron (NR_164112, intron 3 of 7)	13197	NR_164112	643365		NM_001039767	ENSG00000229373	LINC00452	LINC00453	long intergenic non-protein coding RNA 452	ncRNA
99620	chr17	50558651	50559580	+	0	NA	intron (NR_038439, intron 1 of 1)	CpG	-1600	NM_198377	8913		NM_018896	ENSG00000006283	CACNA1G	Ca(V)T.1|Cav3.1|NBR13|SCA42|SCA42ND	calcium voltage-gated channel subunit alpha1 G	protein-coding
230726	chr9	128818111	128819300	+	0	NA	TTS (NM_016390)	TTS (NM_016390)	205	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
54575	chr12	92394671	92395080	+	0	NA	Intergenic	Intergenic	-26656	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
43476	chr11	78192971	78193200	+	0	NA	intron (NM_020798, intron 1 of 10)	intron (NM_020798, intron 1 of 10)	4166	NM_020798	57558		NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
19360	chr1	173859271	173860430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3398	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
29537	chr10	70981351	70981650	+	0	NA	Intergenic	Intergenic	42447	NR_134314	105378349		NR_134313	ENSG00000259267	LINC02622	-	long intergenic non-protein coding RNA 2622	ncRNA
189525	chr5	173770751	173770850	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	20142	NR_108028	101928154		NR_108028	ENSG00000254211	LINC01485	-	long intergenic non-protein coding RNA 1485	ncRNA
37831	chr11	33234171	33234330	+	0	NA	Intergenic	AluYd8|SINE|Alu	-22422	NM_001278163	10114		NM_005734	ENSG00000110422	HIPK3	DYRK6|FIST3|PKY|YAK1	homeodomain interacting protein kinase 3	protein-coding
145675	chr20	44984121	44984530	+	0	NA	intron (NM_006282, intron 4 of 10)	AluY|SINE|Alu	17813	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
201825	chr6	150036251	150036550	+	0	NA	Intergenic	Intergenic	-10868	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
57866	chr12	123366951	123367430	+	0	NA	Intergenic	AluSq2|SINE|Alu	2242	NR_157806	112268105		NR_157805	ENSG00000256092	SBNO1-AS1	-	SBNO1 antisense RNA 1	ncRNA
72200	chr15	30137201	30137400	+	0	NA	intron (NM_001355469, intron 2 of 18).8	AluY|SINE|Alu	2249	NM_001355469	653075		NM_001355469	ENSG00000261247	GOLGA8T	-	golgin A8 family member T	protein-coding
81667	chr16	11053801	11054200	+	0	NA	intron (NM_001243403, intron 17 of 20)	intron (NM_001243403, intron 17 of 20)	109436	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
49796	chr12	31957751	31957850	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-1615	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
170088	chr3	182989871	182990050	+	0	NA	Intergenic	AluY|SINE|Alu	-4042	NM_001308101	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
229560	chr9	122991301	122991900	+	0	NA	intron (NM_012197, intron 6 of 25)	intron (NM_012197, intron 6 of 25)	-42067	NM_005294	2844		NM_005294	ENSG00000188394	GPR21	-	G protein-coupled receptor 21	protein-coding
221296	chr8	123011101	123011580	+	0	NA	Intergenic	Intergenic	14432	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
226763	chr9	76444451	76444750	+	0	NA	intron (NM_001097634, intron 1 of 2)	L2a|LINE|L2	2934	NM_001097634	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
177894	chr4	128863421	128864050	+	0	NA	3' UTR (NM_024900, exon 9 of 9)	3' UTR (NM_024900, exon 9 of 9)	51891	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
41873	chr11	67236371	67236530	+	0	NA	intron (NM_012308, intron 12 of 20)	intron (NM_012308, intron 12 of 20)	-3564	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
159725	chr3	15794021	15794880	+	0	NA	intron (NM_001349285, intron 2 of 2)	intron (NM_001349285, intron 2 of 2)	3529	NM_001349284	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
206682	chr7	36440821	36441100	+	0	NA	intron (NM_018685, intron 21 of 23)	intron (NM_018685, intron 21 of 23)	-50603	NM_001100425	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
16175	chr1	153788521	153788780	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5297	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
191697	chr6	13624801	13625150	+	0	NA	intron (NM_005493, intron 13 of 13)	intron (NM_005493, intron 13 of 13)	9640	NM_016167	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
214644	chr7	150750271	150750700	+	0	NA	Intergenic	L1PA10|LINE|L1	13137	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
113095	chr19	8278601	8279000	+	0	NA	Intergenic	AluJb|SINE|Alu	29558	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
153015	chr22	23219651	23220930	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	39781	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
25334	chr10	6237971	6238330	+	0	NA	intron (NM_001363545, intron 14 of 14)	intron (NM_001363545, intron 14 of 14)	35218	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
38437	chr11	45158121	45158380	+	0	NA	intron (NM_001256695, intron 1 of 7)	intron (NM_001256695, intron 1 of 7)	10907	NM_001256696	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
227487	chr9	91174621	91175280	+	0	NA	intron (NR_135306, intron 2 of 2)	L1M5|LINE|L1	55888	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
68260	chr14	77031701	77031950	+	0	NA	non-coding (NR_169510, exon 2 of 2)	non-coding (NR_169510, exon 2 of 2)	2381	NR_169510	105370579		NR_169510		LOC105370579	-	uncharacterized LOC105370579	ncRNA
64431	chr14	24193401	24193600	+	0	NA	intron (NM_001289006, intron 2 of 5).2	AluSx1|SINE|Alu	1941	NM_006405	10548		NM_006405	ENSG00000100926	TM9SF1	HMP70|MP70	transmembrane 9 superfamily member 1	protein-coding
168946	chr3	152370871	152371030	+	0	NA	intron (NM_001376837, intron 2 of 9)	L1PA7|LINE|L1	-29960	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
229689	chr9	124632171	124632330	+	0	NA	intron (NM_033334, intron 2 of 9)	L1PA12|LINE|L1	-26186	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
11969	chr1	94061351	94061700	+	0	NA	intron (NM_000350, intron 13 of 49)	intron (NM_000350, intron 13 of 49)	59623	NM_000350	24		NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
117450	chr19	19672601	19673380	+	0	NA	intron (NM_033204, intron 1 of 3)	AluSx|SINE|Alu	4151	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
189847	chr5	177112771	177112930	+	0	NA	Intergenic	Intergenic	-20229	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
15961	chr1	151848271	151848430	+	0	NA	intron (NM_182578, intron 3 of 5)	intron (NM_182578, intron 3 of 5)	5362	NM_182578	284486		NM_182578	ENSG00000196407	THEM5	ACOT15	thioesterase superfamily member 5	protein-coding
123224	chr19	52855851	52856100	+	0	NA	intron (NR_102300, intron 1 of 5)	intron (NR_102300, intron 1 of 5)	1644	NR_102299	90333		NM_199132	ENSG00000204604	ZNF468	-	zinc finger protein 468	protein-coding
224941	chr9	33032221	33032580	+	0	NA	intron (NM_001314039, intron 4 of 7)	MER6B|DNA|TcMar-Tigger	7127	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
216855	chr8	22614551	22615400	+	0	NA	non-coding (NR_033902, exon 11 of 21)	non-coding (NR_033902, exon 11 of 21)	9933	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
171390	chr3	196179371	196180550	+	0	NA	Intergenic	Intergenic	31440	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
61583	chr13	72757121	72757380	+	0	NA	3' UTR (NM_001322349, exon 22 of 22)	3' UTR (NM_001322349, exon 22 of 22)	24650	NM_001322349	22894		NM_014953	ENSG00000083520	DIS3	2810028N01Rik|EXOSC11|KIAA1008|RRP44|dis3p	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding
83557	chr16	28091801	28092200	+	0	NA	Intergenic	Intergenic	-28286	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
99571	chr17	50470921	50471380	+	0	NA	intron (NR_110232, intron 2 of 5)	intron (NR_110232, intron 2 of 5)	-2270	NM_001267	1101		NM_001267	ENSG00000136457	CHAD	SLRR4A	chondroadherin	protein-coding
68295	chr14	77181121	77182230	+	0	NA	promoter-TSS (NM_020431)	promoter-TSS (NM_020431)	-123	NM_020431	57156		NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|SPG87|hsCSC1	transmembrane protein 63C	protein-coding
201547	chr6	149212751	149214200	+	0	NA	Intergenic	Intergenic	-4449	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
34784	chr11	215521	216380	+	0	NA	TTS (NM_021932)	TTS (NM_021932)	6614	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
77669	chr15	85583871	85584450	+	0	NA	intron (NM_007200, intron 7 of 36)	intron (NM_007200, intron 7 of 36)	-35790	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
131549	chr2	96763751	96764800	+	0	NA	intron (NM_020184, intron 1 of 6)	intron (NM_020184, intron 1 of 6)	3373	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
48140	chr12	7909921	7911200	+	0	NA	Intergenic	AluSz|SINE|Alu	-19364	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
7708	chr1	36087771	36087930	+	0	NA	intron (NM_014466, intron 9 of 9)	intron (NM_014466, intron 9 of 9)	-1042	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
223027	chr8	143332651	143333150	+	0	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	1980	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
55264	chr12	102478551	102479280	+	0	NA	promoter-TSS (NM_001111284)	promoter-TSS (NM_001111284)	-365	NM_001111284	3479		NM_000618	ENSG00000017427	IGF1	IGF|IGF-I|IGFI|MGF	insulin like growth factor 1	protein-coding
28673	chr10	60648801	60649000	+	0	NA	intron (NM_001204403, intron 1 of 43)	intron (NM_001204403, intron 1 of 43)	-75944	NM_001204404	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
214743	chr7	151053651	151054280	+	0	NA	3' UTR (NM_001164410, exon 11 of 11)	3' UTR (NM_001164410, exon 11 of 11)	3932	NM_001164410	1020		NM_004935	ENSG00000164885	CDK5	LIS7|PSSALRE	cyclin dependent kinase 5	protein-coding
185692	chr5	131973301	131973880	+	0	NA	intron (NM_001205250, intron 11 of 20)	intron (NM_001205250, intron 11 of 20)	-27927	NM_001303622	728637		NM_001278059	ENSG00000239642	MEIKIN	SPO13	meiotic kinetochore factor	protein-coding
165814	chr3	105822651	105822950	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	44791	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
162483	chr3	48560771	48561730	+	0	NA	promoter-TSS (NM_001317136)	promoter-TSS (NM_001317136)	-121	NM_001317136	5210		NM_004567	ENSG00000114268	PFKFB4	-	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding
14536	chr1	144861151	144861530	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	143169	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
226664	chr9	75013771	75014200	+	0	NA	intron (NM_152420, intron 3 of 7)	AluJr|SINE|Alu	13166	NM_001320497	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
124191	chr19	56253701	56253930	+	0	NA	intron (NM_001322061, intron 2 of 6)	Zaphod2|DNA|hAT-Tip100	-18933	NM_001354658	100506374		NM_001354658	ENSG00000267710	EDDM13	-	epididymal protein 13	protein-coding
229717	chr9	124856051	124857230	+	0	NA	intron (NM_001045476, intron 6 of 8)	intron (NM_001045476, intron 6 of 8)	3180	NM_001276375	401551		NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
198799	chr6	109005621	109006300	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	3028	NM_001199934	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
187382	chr5	141872321	141873300	+	0	NA	intron (NM_032420, intron 1 of 4)	intron (NM_032420, intron 1 of 4)	-3183	NM_001278613	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
168690	chr3	150610821	150611150	+	0	NA	intron (NM_016275, intron 1 of 5)	MIRc|SINE|MIR	7664	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
38955	chr11	47532851	47533150	+	0	NA	intron (NM_001376409, intron 1 of 15)	intron (NM_001376409, intron 1 of 15)	-8296	NM_001376369	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
7647	chr1	35591151	35591450	+	0	NA	intron (NM_178548, intron 6 of 6)	intron (NM_178548, intron 6 of 6)	17986	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
73193	chr15	41508721	41509100	+	0	NA	intron (NM_206961, intron 7 of 18)	intron (NM_206961, intron 7 of 18)	4917	NM_002344	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
157628	chr22	46074421	46074800	+	0	NA	Intergenic	Intergenic	-3589	NR_148973	642648		NR_148973		LINC02939	-	long intergenic non-protein coding RNA 2939	ncRNA
136712	chr2	181165151	181166280	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	41878	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
107879	chr18	55780851	55780950	+	0	NA	promoter-TSS (NR_145453)	promoter-TSS (NR_145453)	-150	NR_145454	100132501		NR_145452		LINC01415	TCONS_00026208	long intergenic non-protein coding RNA 1415	ncRNA
237877	chrX	130902451	130903690	+	0	NA	5' UTR (NM_006375, exon 1 of 15)	5' UTR (NM_006375, exon 1 of 15)	139	NM_001382518	10495		NM_006375	ENSG00000165675	ENOX2	APK1|COVA1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding
133568	chr2	121500921	121501180	+	0	NA	intron (NM_001142274, intron 8 of 37)	intron (NM_001142274, intron 8 of 37)	-29830	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
216961	chr8	23004321	23004880	+	0	NA	exon (NM_001374791, exon 2 of 10)	exon (NM_001374791, exon 2 of 10)	5052	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
128368	chr2	55011051	55011530	+	0	NA	intron (NM_153828, intron 1 of 6)	AluJo|SINE|Alu	-1018	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
147557	chr20	60058341	60058950	+	0	NA	TTS (NR_126504)	TTS (NR_126504)	2720	NR_126504	284756		NR_126504	ENSG00000176659	LINC02910	C20orf197	long intergenic non-protein coding RNA 2910	ncRNA
203772	chr7	1226551	1227280	+	0	NA	Intergenic	Intergenic	-5957	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
75457	chr15	65856001	65856280	+	0	NA	Intergenic	AluSp|SINE|Alu	-13351	NM_004663	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
195231	chr6	36202771	36202930	+	0	NA	intron (NM_015695, intron 2 of 12)	intron (NM_015695, intron 2 of 12)	6106	NM_015695	27154		NM_015695	ENSG00000096070	BRPF3	-	bromodomain and PHD finger containing 3	protein-coding
19025	chr1	169670521	169670780	+	0	NA	Intergenic	L1PA7|LINE|L1	38207	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
201792	chr6	149983951	149984500	+	0	NA	Intergenic	Intergenic	20282	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
196787	chr6	45676371	45676730	+	0	NA	Intergenic	Intergenic	254275	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
197463	chr6	75267571	75267730	+	0	NA	exon (NM_018247, exon 2 of 7)	exon (NM_018247, exon 2 of 7)	17142	NM_018247	55754		NM_018247	ENSG00000112697	TMEM30A	C6orf67|CDC50A	transmembrane protein 30A	protein-coding
77871	chr15	88907501	88907700	+	0	NA	intron (NM_001310319, intron 1 of 6)	intron (NM_001310319, intron 1 of 6)	5568	NM_001310321	4240		NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule EGF and factor V/VIII domain containing	protein-coding
166567	chr3	115783721	115785350	+	0	NA	Intergenic	CpG	120591	NR_145779	109623450		NR_145779		SNORD155	-	small nucleolar RNA, C/D box 155	snoRNA
92930	chr17	16745601	16746080	+	0	NA	intron (NR_130142, intron 11 of 15)	intron (NR_130142, intron 11 of 15)	-41052	NR_003190	162632		NR_003190	ENSG00000290976	USP32P1	-	ubiquitin specific peptidase 32 pseudogene 1	pseudo
120042	chr19	41985951	41986250	+	0	NA	intron (NM_001256213, intron 5 of 22)	intron (NM_001256213, intron 5 of 22)	7367	NM_001256213	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
71310	chr14	105351901	105352980	+	0	NA	exon (NM_015197, exon 3 of 24)	exon (NM_015197, exon 3 of 24)	-36863	NM_001242787	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
143533	chr20	31570771	31571330	+	0	NA	intron (NR_046853, intron 2 of 2)	intron (NR_046853, intron 2 of 2)	2213	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
6416	chr1	28059071	28059630	+	0	NA	intron (NR_104214, intron 1 of 16)	intron (NR_104214, intron 1 of 16)	29260	NM_001282560	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
98705	chr17	47944251	47944550	+	0	NA	intron (NM_018129, intron 2 of 6)	MLT1B|LTR|ERVL-MaLR	2829	NM_018129	55163		NM_018129	ENSG00000108439	PNPO	HEL-S-302|PDXPO	pyridoxamine 5'-phosphate oxidase	protein-coding
142757	chr20	10495251	10495550	+	0	NA	intron (NM_001009608, intron 2 of 7)	L1ME3Cz|LINE|L1	60095	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
217247	chr8	27287651	27288130	+	0	NA	exon (NM_171982, exon 6 of 6)	exon (NM_171982, exon 6 of 6)	23382	NM_001362813	23087		NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
136441	chr2	176815971	176816330	+	0	NA	Intergenic	AluJo|SINE|Alu	178396	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
237371	chrX	119008171	119008330	+	0	NA	intron (NM_001031855, intron 6 of 10)	intron (NM_001031855, intron 6 of 10)	31918	NM_001289109	79836		NM_024778	ENSG00000175556	LONRF3	RNF127	LON peptidase N-terminal domain and ring finger 3	protein-coding
45663	chr11	119021551	119021650	+	0	NA	intron (NM_001318488, intron 3 of 4)	MIRc|SINE|MIR	2834	NM_001318489	51399		NM_016146	ENSG00000196655	TRAPPC4	CGI-104|HSPC172|NEDESBA|PTD009|SBDN|SYNBINDIN|TRS23	trafficking protein particle complex subunit 4	protein-coding
176233	chr4	86496171	86496400	+	0	NA	Intergenic	Intergenic	-43090	NM_002753	5602		NM_002753	ENSG00000109339	MAPK10	JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
21018	chr1	202928621	202928880	+	0	NA	promoter-TSS (NM_001303051)	promoter-TSS (NM_001303051)	-151	NM_001303051	59349		NM_021633	ENSG00000117153	KLHL12	C3IP1|DKIR	kelch like family member 12	protein-coding
30607	chr10	80190721	80191200	+	0	NA	intron (NM_001278408, intron 1 of 16)	AluSq2|SINE|Alu	13531	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
20716	chr1	200862221	200863600	+	0	NA	Intergenic	Intergenic	-10071	NM_005298	2848		NM_005298	ENSG00000170128	GPR25	-	G protein-coupled receptor 25	protein-coding
120199	chr19	42286751	42287750	+	0	NA	intron (NM_001379484, intron 3 of 19)	intron (NM_001379484, intron 3 of 19)	2781	NM_015125	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
151554	chr21	46552411	46553080	+	0	NA	intron (NM_001353942, intron 25 of 37)	L2a|LINE|L2	52337	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
88857	chr16	87681221	87681580	+	0	NA	intron (NM_020655, intron 2 of 4)	CpG	78892	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
42984	chr11	73875871	73877300	+	0	NA	promoter-TSS (NM_001267806)	promoter-TSS (NM_001267806)	-114	NM_001267806	80227		NM_025155	ENSG00000175575	PAAF1	PAAF|Rpn14|WDR71	proteasomal ATPase associated factor 1	protein-coding
217323	chr8	27459971	27460330	+	0	NA	TTS (NM_004103)	TTS (NM_004103)	19111	NM_000742	1135		NM_000742	ENSG00000120903	CHRNA2	-	cholinergic receptor nicotinic alpha 2 subunit	protein-coding
77178	chr15	80151051	80151430	+	0	NA	Intergenic	Intergenic	-1549	NM_001374380	2184		NM_000137	ENSG00000103876	FAH	-	fumarylacetoacetate hydrolase	protein-coding
220949	chr8	109332271	109332630	+	0	NA	intron (NM_032869, intron 1 of 9)	MLT1H|LTR|ERVL-MaLR	1637	NM_032869	84955		NM_032869	ENSG00000120526	NUDCD1	CML66|OVA66	NudC domain containing 1	protein-coding
117044	chr19	18938401	18938700	+	0	NA	intron (NM_001145721, intron 3 of 9)	intron (NM_001145721, intron 3 of 9)	499	NM_001145724	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
56909	chr12	120370371	120370730	+	0	NA	Intergenic	Intergenic	-1386	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
212292	chr7	123763921	123764180	+	0	NA	Intergenic	AluJo|SINE|Alu	-15047	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
169513	chr3	170027451	170027950	+	0	NA	Intergenic	MER41B|LTR|ERV1	-10295	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
166710	chr3	120752401	120752600	+	0	NA	intron (NM_005513, intron 2 of 4)	intron (NM_005513, intron 2 of 4)	9756	NM_005513	2960		NM_005513	ENSG00000153767	GTF2E1	FE|TF2E1|TFIIE-A	general transcription factor IIE subunit 1	protein-coding
6542	chr1	28585301	28585700	+	0	NA	Intergenic	L2a|LINE|L2	-2517	NR_146382	85028		NR_024127	ENSG00000197989	SNHG12	ASLNC04080|C1orf79|LINC00100|NCRNA00100|PNAS-123	small nucleolar RNA host gene 12	ncRNA
173845	chr4	21795201	21795400	+	0	NA	intron (NM_147182, intron 1 of 8)	MLT1B|LTR|ERVL-MaLR	57888	NR_002813	359822		NR_002813	ENSG00000280650	KCNIP4-IT1	NCRNA00099|UM9(5)|UM9-5	KCNIP4 intronic transcript 1	ncRNA
175106	chr4	54319051	54319150	+	0	NA	Intergenic	Intergenic	-13792	NR_147160	105377656		NR_147160		LINC02283	-	long intergenic non-protein coding RNA 2283	ncRNA
146192	chr20	48766351	48766850	+	0	NA	intron (NM_020820, intron 1 of 39)	L2b|LINE|L2	61399	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
82761	chr16	21425671	21426130	+	0	NA	promoter-TSS (NM_130464)	promoter-TSS (NM_130464)	-522	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
173370	chr4	7868621	7869530	+	0	NA	intron (NM_001371091, intron 3 of 17)	GA-rich|Low_complexity|Low_complexity	3233	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
138692	chr2	213088071	213088430	+	0	NA	intron (NM_001371277, intron 3 of 6)	L1PA5|LINE|L1	62187	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
121407	chr19	46963001	46963280	+	0	NA	intron (NM_004491, intron 3 of 6)	intron (NM_004491, intron 3 of 6)	-56697	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
60558	chr13	41489171	41489330	+	0	NA	Intergenic	AluY|SINE|Alu	31700	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
69647	chr14	97846121	97846530	+	0	NA	Intergenic	(GGT)n|Simple_repeat|Simple_repeat	-83494	NR_146447	100132612		NR_146447	ENSG00000258869	LINC02312	-	long intergenic non-protein coding RNA 2312	ncRNA
111075	chr19	3166671	3166830	+	0	NA	Intergenic	L1MC5a|LINE|L1	-11575	NR_110670	100996351		NR_110670	ENSG00000267551	GNA15-DT	-	GNA15 divergent transcript	ncRNA
75935	chr15	70247421	70247680	+	0	NA	Intergenic	Intergenic	-149633	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
196619	chr6	44256801	44259300	+	0	NA	promoter-TSS (NM_001286510)	promoter-TSS (NM_001286510)	-160	NM_001286511	347734		NM_178148	ENSG00000157593	SLC35B2	HLD26|PAPST1|SLL|UGTrel4	solute carrier family 35 member B2	protein-coding
223276	chr8	143727621	143728950	+	0	NA	exon (NM_198488, exon 5 of 5)	exon (NM_198488, exon 5 of 5)	4868	NR_039810	100616318		NR_039810	ENSG00000265660	MIR4664	-	microRNA 4664	ncRNA
189341	chr5	172180901	172181580	+	0	NA	intron (NM_005990, intron 1 of 18)	Tigger9b|DNA|TcMar-Tigger	6984	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
193677	chr6	31058271	31058580	+	0	NA	intron (NR_145427, intron 3 of 3)	Charlie13b|DNA|hAT-Charlie	4975	NR_003948	285834		NM_001348249	ENSG00000228789	HCG22	PBMUCL2	HLA complex group 22 (non-protein coding)	ncRNA
4424	chr1	21260401	21261000	+	0	NA	intron (NM_001397, intron 4 of 18)	intron (NM_001397, intron 4 of 18)	18915	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
146049	chr20	47358951	47359450	+	0	NA	Intergenic	Intergenic	-2311	NM_001281769	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
150756	chr21	43783221	43783680	+	0	NA	Intergenic	Intergenic	-6127	NM_003683	8568		NM_003683	ENSG00000160214	RRP1	D21S2056E|NNP-1|NOP52|RRP1A	ribosomal RNA processing 1	protein-coding
13206	chr1	112638151	112638250	+	0	NA	intron (NM_006135, intron 1 of 9)	L2a|LINE|L2	18368	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
90712	chr17	1834001	1834950	+	0	NA	intron (NM_001355120, intron 1 of 16)	intron (NM_001355120, intron 1 of 16)	4470	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
130774	chr2	86839421	86839950	+	0	NA	3' UTR (NM_004931, exon 6 of 6)	3' UTR (NM_004931, exon 6 of 6)	-22140	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
222945	chr8	143039051	143039830	+	0	NA	promoter-TSS (NR_031636).2	promoter-TSS (NR_031636).2	231	NR_126399	286122		NR_126398	ENSG00000177335	LY6S-AS1	C8orf31|LINC02904	LY6S antisense RNA 1	ncRNA
47532	chr12	4268521	4270200	+	0	NA	intron (NR_149145, intron 1 of 3)	CpG	-4402	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
18581	chr1	164660051	164660830	+	0	NA	intron (NM_001353131, intron 2 of 7)	intron (NM_001353131, intron 2 of 7)	100718	NM_001353130	5087		NM_002585	ENSG00000185630	PBX1	CAKUHED	PBX homeobox 1	protein-coding
155647	chr22	38984621	38985680	+	0	NA	intron (NM_004900, intron 2 of 7)	AluSx1|SINE|Alu	2803	NM_001270411	9582		NM_004900	ENSG00000179750	APOBEC3B	A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2	apolipoprotein B mRNA editing enzyme catalytic subunit 3B	protein-coding
181653	chr5	50409751	50409850	+	0	NA	intron (NM_198449, intron 4 of 8)	intron (NM_198449, intron 4 of 8)	31488	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
107846	chr18	54343601	54343800	+	0	NA	intron (NM_139171, intron 4 of 7)	SVA_F|Retroposon|SVA	10873	NR_138549	147323		NM_139171	ENSG00000174448	STARD6	-	StAR related lipid transfer domain containing 6	protein-coding
65795	chr14	54669671	54670430	+	0	NA	intron (NM_015589, intron 2 of 12)	intron (NM_015589, intron 2 of 12)	-84783	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
185918	chr5	132829801	132830950	+	0	NA	intron (NM_001172700, intron 1 of 9)	CpG	272	NM_001172700	134549		NM_133456	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
50747	chr12	48996651	48997880	+	0	NA	exon (NM_015086, exon 2 of 2)	exon (NM_015086, exon 2 of 2)	-1082	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
128431	chr2	55417271	55417780	+	0	NA	intron (NM_018084, intron 2 of 31)	intron (NM_018084, intron 2 of 31)	2331	NM_018084	55704		NM_018084	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL	coiled-coil domain containing 88A	protein-coding
102432	chr17	75672401	75672800	+	0	NA	intron (NR_126036, intron 3 of 9)	intron (NR_126036, intron 3 of 9)	5262	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
180556	chr5	14669871	14670450	+	0	NA	intron (NM_138348, intron 1 of 6)	intron (NM_138348, intron 1 of 6)	5442	NM_138348	90268		NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM|IMD107	OTU deubiquitinase with linear linkage specificity	protein-coding
188202	chr5	150690121	150690700	+	0	NA	TTS (NM_018047)	TTS (NM_018047)	10652	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
173527	chr4	9870401	9870600	+	0	NA	intron (NM_020041, intron 10 of 11)	intron (NM_020041, intron 10 of 11)	88866	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
3643	chr1	16391301	16391780	+	0	NA	intron (NM_001271869, intron 2 of 3)	intron (NM_001271869, intron 2 of 3)	24298	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
146343	chr20	49242951	49243530	+	0	NA	intron (NM_017895, intron 19 of 20)	intron (NM_017895, intron 19 of 20)	23824	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
165200	chr3	72748471	72749030	+	0	NA	TTS (NM_018130)	TTS (NM_018130)	-84501	NR_135531	105377162		NR_135531		LOC105377162	-	uncharacterized LOC105377162	ncRNA
181903	chr5	54637901	54638650	+	0	NA	Intergenic	Intergenic	65049	NR_104659	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
212127	chr7	116234701	116235180	+	0	NA	intron (NM_015641, intron 2 of 6)	intron (NM_015641, intron 2 of 6)	11987	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
65760	chr14	54366801	54367100	+	0	NA	Intergenic	Intergenic	-29918	NM_001330173	1033		NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
91174	chr17	3804571	3804930	+	0	NA	3' UTR (NM_001114118, exon 13 of 13)	3' UTR (NM_001114118, exon 13 of 13)	-3562	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
235832	chrX	49309601	49310050	+	0	NA	intron (NM_001098413, intron 3 of 4)	HERV15-int|LTR|ERV1	6179	NM_001098413	102724473		NM_001098413	ENSG00000215274	GAGE10	GAGE-10	G antigen 10	protein-coding
140458	chr2	233165941	233166850	+	0	NA	intron (NM_001017915, intron 13 of 26).2	intron (NM_001017915, intron 13 of 26).2	-85176	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
213489	chr7	139051071	139051730	+	0	NA	intron (NM_020119, intron 12 of 12)	intron (NM_020119, intron 12 of 12)	-7243	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
117922	chr19	33064101	33065200	+	0	NA	intron (NM_033103, intron 1 of 14)	CpG	238	NM_033103	85415		NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	rhophilin Rho GTPase binding protein 2	protein-coding
12349	chr1	101215101	101215400	+	0	NA	Intergenic	AluY|SINE|Alu	21278	NR_104626	101928370		NR_104626		S1PR1-DT	LISPR1	S1PR1 divergent transcript	ncRNA
146227	chr20	48804601	48805000	+	0	NA	intron (NM_020820, intron 1 of 39)	L2a|LINE|L2	23199	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
46298	chr11	124877901	124878100	+	0	NA	exon (NM_022370, exon 21 of 28)	exon (NM_022370, exon 21 of 28)	1186	NM_001370357	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
110621	chr19	2207351	2207900	+	0	NA	exon (NM_032482, exon 11 of 28)	exon (NM_032482, exon 11 of 28)	26524	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
87451	chr16	71288721	71290050	+	0	NA	promoter-TSS (NM_001099642)	promoter-TSS (NM_001099642)	17	NM_001099642	55783		NM_018348	ENSG00000180917	CMTR2	AFT|FTSJD1|HMTr2|MTr2	cap methyltransferase 2	protein-coding
68486	chr14	88008601	88009050	+	0	NA	intron (NM_003608, intron 1 of 1)	L1ME3A|LINE|L1	3690	NM_003608	8477		NM_003608	ENSG00000140030	GPR65	TDAG8|hTDAG8	G protein-coupled receptor 65	protein-coding
131576	chr2	96826901	96827100	+	0	NA	intron (NM_199078, intron 2 of 6)	intron (NM_199078, intron 2 of 6)	10732	NM_017623	26505		NM_017623	ENSG00000168763	CNNM3	ACDP3	cyclin and CBS domain divalent metal cation transport mediator 3	protein-coding
237658	chrX	124271101	124271630	+	0	NA	Intergenic	Intergenic	-61295	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
1307	chr1	2394271	2394530	+	0	NA	intron (NM_007033, intron 1 of 6)	intron (NM_007033, intron 1 of 6)	2559	NM_007033	11079		NM_007033	ENSG00000157916	RER1	-	retention in endoplasmic reticulum sorting receptor 1	protein-coding
220588	chr8	100898801	100899330	+	0	NA	Intergenic	L2c|LINE|L2	51506	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
152382	chr22	20521371	20521530	+	0	NA	intron (NM_001293237, intron 1 of 16)	AluY|SINE|Alu	13403	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
181754	chr5	50717121	50717380	+	0	NA	intron (NM_024615, intron 2 of 25)	L2a|LINE|L2	49836	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
79919	chr16	1721221	1721530	+	0	NA	intron (NM_001318852, intron 1 of 31)	FLAM_C|SINE|Alu	-13610	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
179060	chr4	165493301	165493580	+	0	NA	intron (NM_001873, intron 7 of 8)	intron (NM_001873, intron 7 of 8)	107198	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
45009	chr11	117002751	117003950	+	0	NA	intron (NM_001281748, intron 1 of 24)	MIRc|SINE|MIR	95078	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
85877	chr16	57049271	57049430	+	0	NA	intron (NM_001384955, intron 23 of 47)	L2b|LINE|L2	-43233	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
41001	chr11	65414371	65414530	+	0	NA	TTS (NM_001300833)	TTS (NM_001300833)	-8348	NR_028272	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
182628	chr5	66830671	66830850	+	0	NA	intron (NM_015183, intron 1 of 27)	intron (NM_015183, intron 1 of 27)	1987	NM_015183	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
97797	chr17	44771401	44771900	+	0	NA	exon (NM_002390, exon 5 of 27)	exon (NM_002390, exon 5 of 27)	12662	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
130673	chr2	86372421	86372880	+	0	NA	Intergenic	Intergenic	-34567	NM_001164730	65055		NM_022912	ENSG00000068615	REEP1	C2orf23|DSMA6|HMN5B|HMND12|HMNR6|SPG31|Yip2a	receptor accessory protein 1	protein-coding
217029	chr8	23241851	23242150	+	0	NA	Intergenic	AluSc|SINE|Alu	-1637	NM_152272	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
168979	chr3	152401651	152401750	+	0	NA	intron (NM_001314057, intron 3 of 11)	intron (NM_001314057, intron 3 of 11)	-60710	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
120924	chr19	45648301	45648500	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-2771	NM_001352052	24139		NM_012155	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	EMAP like 2	protein-coding
186175	chr5	134197571	134197930	+	0	NA	non-coding (NR_149151, exon 7 of 7)	non-coding (NR_149151, exon 7 of 7)	-20717	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
23780	chr1	233325401	233326230	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-1909	NM_032435	84451		NM_032435	ENSG00000143674	MAP3K21	MLK4|dJ862P8.3	mitogen-activated protein kinase kinase kinase 21	protein-coding
237908	chrX	131812821	131813550	+	0	NA	intron (NR_026975, intron 2 of 12)	intron (NR_026975, intron 2 of 12)	17458	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
78477	chr15	92902621	92903400	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	-1389	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
122195	chr19	48951101	48951300	+	0	NA	Intergenic	Intergenic	-3660	NM_001291430	581		NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
22574	chr1	222710871	222711700	+	0	NA	intron (NM_022831, intron 1 of 9)	intron (NM_022831, intron 1 of 9)	1206	NM_022831	64853		NM_022831	ENSG00000186063	AIDA	C1orf80	axin interactor, dorsalization associated	protein-coding
90224	chr17	575851	576350	+	0	NA	intron (NM_018289, intron 12 of 17)	intron (NM_018289, intron 12 of 17)	-130160	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
109458	chr19	788951	789650	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-8152	NM_002819	5725		NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
165081	chr3	71481121	71481380	+	0	NA	intron (NM_001012505, intron 3 of 6)	MIR|SINE|MIR	60839	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
58764	chr12	132689971	132690130	+	0	NA	intron (NM_018663, intron 1 of 4)	L1MD1|LINE|L1	2463	NM_018663	5827		NM_018663	ENSG00000176894	PXMP2	MPV17L3|PMP22	peroxisomal membrane protein 2	protein-coding
171738	chr3	197961571	197962080	+	0	NA	intron (NM_001136049, intron 1 of 16)	intron (NM_001136049, intron 1 of 16)	1608	NR_026787	89782		NM_033029	ENSG00000185621	LMLN	GP63|INV|IX14|LMNL1|MSP	leishmanolysin like peptidase	protein-coding
119812	chr19	41343101	41343300	+	0	NA	intron (NM_000660, intron 3 of 6)	AluSp|SINE|Alu	10722	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
159892	chr3	16893751	16894050	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	8945	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
109462	chr19	793501	794300	+	0	NA	Intergenic	Intergenic	-3552	NM_002819	5725		NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
3793	chr1	16711801	16712330	+	0	NA	intron (NR_026567, intron 1 of 10)	MIRb|SINE|MIR	8092	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
89746	chr16	89441671	89441980	+	0	NA	intron (NR_110932, intron 1 of 2)	intron (NR_110932, intron 1 of 2)	10907	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
84353	chr16	30210251	30210860	+	0	NA	Intergenic	LTR13|LTR|ERVK	-3628	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
2443	chr1	9625371	9625530	+	0	NA	Intergenic	AluSx|SINE|Alu	-26281	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
140575	chr2	233349121	233349680	+	0	NA	Intergenic	Intergenic	-5094	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
127714	chr2	43386921	43387780	+	0	NA	intron (NM_022065, intron 29 of 37)	intron (NM_022065, intron 29 of 37)	160139	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
230855	chr9	129114671	129115230	+	0	NA	intron (NM_001193397, intron 1 of 9)	intron (NM_001193397, intron 1 of 9)	3262	NM_001193397	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
87623	chr16	74390571	74391350	+	0	NA	intron (NM_001306094, intron 6 of 6)	intron (NM_001306094, intron 6 of 6)	13008	NM_001306094	440348		NM_001018059	ENSG00000196436	NPIPB15	A-761H5.4|NPIPL2	nuclear pore complex interacting protein family member B15	protein-coding
20894	chr1	202153151	202153450	+	0	NA	intron (NR_037663, intron 7 of 9)	AluSz|SINE|Alu	6154	NM_001364878	5778		NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase non-receptor type 7	protein-coding
104355	chr17	80993251	80993800	+	0	NA	intron (NM_024591, intron 1 of 7)	intron (NM_024591, intron 1 of 7)	1684	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
208848	chr7	73703551	73704650	+	0	NA	intron (NM_001165903, intron 6 of 9)	intron (NM_001165903, intron 6 of 9)	-7217	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
67215	chr14	68941721	68941980	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	37452	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
188573	chr5	157131501	157132240	+	0	NA	Intergenic	AluY|SINE|Alu	10905	NM_001100816	9443		NM_004270	ENSG00000155868	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
126469	chr2	28363471	28363830	+	0	NA	Intergenic	Intergenic	-29208	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
120281	chr19	43438471	43438650	+	0	NA	Intergenic	Intergenic	23670	NM_001130011	83639		NM_031451	ENSG00000131126	TEX101	CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP	testis expressed 101	protein-coding
73341	chr15	42059701	42060330	+	0	NA	Intergenic	Intergenic	-9312	NM_001206670	123745		NM_198442	ENSG00000188089	PLA2G4E	-	phospholipase A2 group IVE	protein-coding
201756	chr6	149935671	149936230	+	0	NA	non-coding (NR_134598, exon 2 of 2)	non-coding (NR_134598, exon 2 of 2)	1437	NR_134598	105378052		NR_134598	ENSG00000293239	LOC105378052	-	uncharacterized LOC105378052	ncRNA
237662	chrX	124280471	124281130	+	0	NA	Intergenic	Intergenic	-51860	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
139874	chr2	230658151	230658250	+	0	NA	Intergenic	AluSx3|SINE|Alu	42329	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
70734	chr14	103357921	103358630	+	0	NA	Intergenic	AluSz|SINE|Alu	20426	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
110712	chr19	2307801	2308600	+	0	NA	promoter-TSS (NM_001101391)	promoter-TSS (NM_001101391)	-46	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
150792	chr21	43884101	43884900	+	0	NA	intron (NM_001369878, intron 1 of 8)	intron (NM_001369878, intron 1 of 8)	19277	NM_001369878	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
138906	chr2	218067301	218067500	+	0	NA	intron (NR_034176, intron 3 of 13)	intron (NR_034176, intron 3 of 13)	-1615	NM_198483	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
140462	chr2	233169771	233169930	+	0	NA	intron (NM_001017915, intron 14 of 26).2	intron (NM_001017915, intron 14 of 26).2	-81721	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
172030	chr4	995621	996300	+	0	NA	intron (NR_110313, intron 2 of 13)	intron (NR_110313, intron 2 of 13)	-2556	NM_022042	10861		NM_022042	ENSG00000145217	SLC26A1	CAON|CAON1|EDM4|HYSULF|SAT-1|SAT1	solute carrier family 26 member 1	protein-coding
41518	chr11	66264451	66264550	+	0	NA	intron (NM_001134774, intron 8 of 14)	intron (NM_001134774, intron 8 of 14)	-4139	NM_030981	81876		NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
164060	chr3	53880651	53881000	+	0	NA	intron (NM_022899, intron 1 of 12)	L2c|LINE|L2	1327	NM_022899	93973		NM_022899	ENSG00000113812	ACTR8	ARP8|INO80N|hArp8	actin related protein 8	protein-coding
127613	chr2	43032321	43032580	+	0	NA	intron (NR_110585, intron 3 of 5)	intron (NR_110585, intron 3 of 5)	7093	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
9671	chr1	52700151	52700250	+	0	NA	Intergenic	Charlie16a|DNA|hAT-Charlie	-1853	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
230961	chr9	129443901	129444100	+	0	NA	Intergenic	MLT1C-int|LTR|ERVL-MaLR	-44660	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
192186	chr6	17689171	17689330	+	0	NA	intron (NM_001278209, intron 1 of 22)	AluSp|SINE|Alu	-16880	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
129484	chr2	69603371	69603980	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	40063	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
109575	chr19	900171	902580	+	0	NA	intron (NM_138774, intron 3 of 7)	intron (NM_138774, intron 3 of 7)	7891	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
10819	chr1	77926601	77927200	+	0	NA	intron (NM_144573, intron 8 of 12)	intron (NM_144573, intron 8 of 12)	-37361	NR_103535	374987		NM_199343	ENSG00000235927	NEXN-AS1	C1orf118	NEXN antisense RNA 1	ncRNA
86951	chr16	68117721	68118330	+	0	NA	intron (NM_173165, intron 1 of 9)	L2b|LINE|L2	32655	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
99113	chr17	49213171	49213330	+	0	NA	intron (NM_001135186, intron 1 of 7)	intron (NM_001135186, intron 1 of 7)	2543	NM_016428	51225		NM_016428	ENSG00000108798	ABI3	NESH|SSH3BP3	ABI family member 3	protein-coding
146156	chr20	48720551	48721350	+	0	NA	intron (NM_020820, intron 5 of 39)	intron (NM_020820, intron 5 of 39)	107049	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
134178	chr2	134287171	134287730	+	0	NA	intron (NM_001371457, intron 3 of 16)	HAL1|LINE|L1	33378	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
161509	chr3	42578371	42578780	+	0	NA	intron (NM_001201572, intron 1 of 6)	L1MD2|LINE|L1	-3265	NM_016305	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
138656	chr2	212815451	212815750	+	0	NA	intron (NR_131941, intron 2 of 4)	intron (NR_131941, intron 2 of 4)	20269	NR_131941	102725079		NR_131941	ENSG00000234308	LINC01878	-	long intergenic non-protein coding RNA 1878	ncRNA
1398	chr1	2547801	2548200	+	0	NA	Intergenic	Intergenic	-8365	NM_001297605	8764		NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
160111	chr3	19945151	19945450	+	0	NA	intron (NM_001330688, intron 1 of 14)	intron (NM_001330688, intron 1 of 14)	1683	NM_001330688	151651		NM_144715	ENSG00000163576	EFHB	CFAP21	EF-hand domain family member B	protein-coding
238150	chrX	136768551	136768880	+	0	NA	promoter-TSS (NM_001306177)	promoter-TSS (NM_001306177)	-900	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
120000	chr19	41925501	41925700	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	2849	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
200554	chr6	136270321	136270580	+	0	NA	intron (NM_001301038, intron 8 of 12)	intron (NM_001301038, intron 8 of 12)	19396	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
103131	chr17	77389021	77389690	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	7699	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
212256	chr7	121544871	121545100	+	0	NA	Intergenic	MER92C|LTR|ERV1	-148617	NM_001040020	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
95217	chr17	35252071	35252380	+	0	NA	intron (NM_144975, intron 1 of 4)	AluJr4|SINE|Alu	9153	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
147746	chr20	62406821	62407950	+	0	NA	promoter-TSS (NM_031215)	promoter-TSS (NM_031215)	-102	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
41382	chr11	65997971	65998700	+	0	NA	3' UTR (NM_001242486, exon 6 of 6)	3' UTR (NM_001242486, exon 6 of 6)	-3744	NM_001143985	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
114449	chr19	12706071	12706430	+	0	NA	TTS (NR_002751)	TTS (NR_002751)	268	NR_002751	26810		NR_002751	ENSG00000209702	SNORD41	RNU41|U41	small nucleolar RNA, C/D box 41	snoRNA
189919	chr5	177368951	177369730	+	0	NA	intron (NM_006480, intron 9 of 14)	intron (NM_006480, intron 9 of 14)	11416	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
64094	chr14	22653021	22653300	+	0	NA	Intergenic	Intergenic	-18316	NM_001348233	79549		NM_001348233	ENSG00000255804	OR6J1	OR6J1P|OR6J2	olfactory receptor family 6 subfamily J member 1	protein-coding
42074	chr11	67492451	67492550	+	0	NA	intron (NM_001130848, intron 23 of 23)	MIR3|SINE|MIR	2255	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
44858	chr11	114165551	114166400	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	-91831	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
158674	chr3	5134801	5135000	+	0	NA	intron (NM_018184, intron 1 of 6)	AluSx|SINE|Alu	12608	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
88165	chr16	81702821	81703750	+	0	NA	intron (NM_030629, intron 17 of 20)	intron (NM_030629, intron 17 of 20)	37931	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
55242	chr12	101876451	101878650	+	0	NA	promoter-TSS (NM_018370)	promoter-TSS (NM_018370)	-30	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
30254	chr10	75115201	75115830	+	0	NA	intron (NM_144660, intron 1 of 4)	intron (NM_144660, intron 1 of 4)	3859	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
44151	chr11	96188321	96189180	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-152688	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
21501	chr1	205741851	205743200	+	0	NA	intron (NM_022731, intron 1 of 6)	intron (NM_022731, intron 1 of 6)	7657	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
25509	chr10	7243921	7244280	+	0	NA	intron (NM_001029880, intron 8 of 20)	intron (NM_001029880, intron 8 of 20)	-57316	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
96543	chr17	40360801	40361030	+	0	NA	3' UTR (NM_152219, exon 1 of 1)	3' UTR (NM_152219, exon 1 of 1)	3822	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
115345	chr19	15194071	15194430	+	0	NA	intron (NM_000435, intron 2 of 32)	AluJr|SINE|Alu	6745	NM_000435	4854		NM_000435	ENSG00000074181	NOTCH3	CADASIL|CADASIL1|CASIL|IMF2|LMNS	notch receptor 3	protein-coding
30432	chr10	79051151	79051450	+	0	NA	intron (NR_024429, intron 3 of 7)	intron (NR_024429, intron 3 of 7)	16148	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
180592	chr5	15003451	15003900	+	0	NA	Intergenic	Intergenic	-131897	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
115870	chr19	16560971	16561530	+	0	NA	intron (NM_024881, intron 4 of 5)	L1MD2|LINE|L1	11165	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
84634	chr16	30711601	30711800	+	0	NA	exon (NM_006662, exon 11 of 34)	exon (NM_006662, exon 11 of 34)	1163	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
220311	chr8	98471071	98471400	+	0	NA	intron (NM_001256312, intron 12 of 12)	intron (NM_001256312, intron 12 of 12)	44277	NM_020697	3788		NM_020697	ENSG00000156486	KCNS2	KV9.2	potassium voltage-gated channel modifier subfamily S member 2	protein-coding
163550	chr3	51686221	51687650	+	0	NA	intron (NM_015926, intron 3 of 4)	intron (NM_015926, intron 3 of 4)	15308	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
97036	chr17	42316871	42317030	+	0	NA	intron (NM_001369512, intron 22 of 23)	intron (NM_001369512, intron 22 of 23)	28894	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
157448	chr22	45245001	45245200	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-4206	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
88190	chr16	81740201	81740900	+	0	NA	Intergenic	AluSx|SINE|Alu	-38741	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
60994	chr13	46831601	46831830	+	0	NA	3' UTR (NM_001165947, exon 3 of 3)	3' UTR (NM_001165947, exon 3 of 3)	-20425	NR_046612	100874082		NR_046612	ENSG00000224517	HTR2A-AS1	-	HTR2A antisense RNA 1	ncRNA
159856	chr3	16545071	16545230	+	0	NA	Intergenic	Intergenic	8832	NR_103843	100996597		NR_103843	ENSG00000233570	LINC00690	-	long intergenic non-protein coding RNA 690	ncRNA
158773	chr3	9411601	9411800	+	0	NA	intron (NM_001349451, intron 1 of 25)	MIR|SINE|MIR	14085	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
165242	chr3	73028921	73029600	+	0	NA	intron (NM_001318025, intron 2 of 7)	L2a|LINE|L2	-32399	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
187829	chr5	146876351	146876700	+	0	NA	intron (NM_181678, intron 2 of 10)	intron (NM_181678, intron 2 of 10)	2232	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
53427	chr12	64890921	64891180	+	0	NA	intron (NR_033988, intron 1 of 2)	intron (NR_033988, intron 1 of 2)	7276	NR_033988	400046		NR_033988	ENSG00000255693	LINC02389	-	long intergenic non-protein coding RNA 2389	ncRNA
227730	chr9	93056051	93056500	+	0	NA	Intergenic	Intergenic	-2413	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
83067	chr16	22353101	22354300	+	0	NA	intron (NM_001802, intron 2 of 4)	MER34B|LTR|ERV1	20919	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
74825	chr15	63491151	63491450	+	0	NA	Intergenic	Intergenic	-13211	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
92808	chr17	16009901	16010830	+	0	NA	intron (NM_017775, intron 7 of 9)	AluSc|SINE|Alu	10541	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
1586	chr1	3610271	3610580	+	0	NA	intron (NM_001409, intron 1 of 36)	intron (NM_001409, intron 1 of 36)	1083	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
174513	chr4	40051501	40051700	+	0	NA	intron (NR_027277, intron 1 of 2)	intron (NR_027277, intron 1 of 2)	-5250	NM_018177	55728		NM_018177	ENSG00000078177	N4BP2	B3BP	NEDD4 binding protein 2	protein-coding
142579	chr20	5529601	5530580	+	0	NA	Intergenic	Intergenic	-20088	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
133635	chr2	126935851	126936150	+	0	NA	Intergenic	L1ME4b|LINE|L1	37110	NR_136239	101929926		NM_001322244	ENSG00000237524	TEX51	-	testis expressed 51	protein-coding
57409	chr12	121832471	121832630	+	0	NA	3' UTR (NM_001353345, exon 17 of 17)	3' UTR (NM_001353345, exon 17 of 17)	26309	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
214424	chr7	149854551	149855480	+	0	NA	intron (NM_001099220, intron 5 of 7)	MLT1E2|LTR|ERVL-MaLR	16640	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
232859	chr9	136795951	136797050	+	0	NA	intron (NM_001039374, intron 1 of 13)	intron (NM_001039374, intron 1 of 13)	162	NM_001039374	84960		NM_032874	ENSG00000213213	CCDC183	KIAA1984|PARF|bA216L13.7	coiled-coil domain containing 183	protein-coding
102857	chr17	76492531	76493450	+	0	NA	intron (NR_164786, intron 1 of 19)	intron (NR_164786, intron 1 of 19)	8433	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
92101	chr17	7572121	7573100	+	0	NA	promoter-TSS (NM_001416)	promoter-TSS (NM_001416)	-215	NM_001416	1973		NM_001416	ENSG00000161960	EIF4A1	DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I	eukaryotic translation initiation factor 4A1	protein-coding
225293	chr9	34520371	34520530	+	0	NA	TTS (NM_198573)	TTS (NM_198573)	2540	NM_198573	375704		NM_198573	ENSG00000168913	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
216726	chr8	22428071	22428230	+	0	NA	intron (NM_001135154, intron 8 of 8)	AluSp|SINE|Alu	-12820	NM_001243974	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
13903	chr1	119799021	119799400	+	0	NA	intron (NM_032044, intron 4 of 5)	intron (NM_032044, intron 4 of 5)	12250	NM_032044	83998		NM_032044	ENSG00000134193	REG4	GISP|REG-IV|RELP	regenerating family member 4	protein-coding
194364	chr6	32967701	32969800	+	0	NA	5' UTR (NM_005104, exon 1 of 13).3	5' UTR (NM_005104, exon 1 of 13).3	156	NM_005104	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
188240	chr5	151028071	151028230	+	0	NA	3' UTR (NM_002084, exon 5 of 5)	3' UTR (NM_002084, exon 5 of 5)	7559	NM_002084	2878		NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
172217	chr4	1309171	1310050	+	0	NA	promoter-TSS (NM_001297433)	promoter-TSS (NM_001297433)	167	NM_001297432	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
197205	chr6	63600151	63600650	+	0	NA	Intergenic	Intergenic	27920	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
105459	chr17	83045151	83045450	+	0	NA	intron (NR_135465, intron 3 of 13)	L1MB5|LINE|L1	6470	NR_135465	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
27032	chr10	26859701	26861650	+	0	NA	intron (NM_001178116, intron 1 of 11)	CpG	283	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
235457	chrX	46554921	46555250	+	0	NA	Intergenic	Intergenic	9595	NR_015378	401588		NR_015378	ENSG00000230844	ZNF674-AS1	-	ZNF674 antisense RNA 1 (head to head)	ncRNA
8429	chr1	40592251	40592550	+	0	NA	Intergenic	MER66C|LTR|ERV1	60763	NM_152373	127396		NM_152373	ENSG00000117010	ZNF684	-	zinc finger protein 684	protein-coding
233261	chr9	137280051	137280380	+	0	NA	3' UTR (NM_017723, exon 2 of 2)	3' UTR (NM_017723, exon 2 of 2)	2489	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
80852	chr16	3506121	3506380	+	0	NA	intron (NM_015041, intron 2 of 11)	intron (NM_015041, intron 2 of 11)	-3644	NM_024793	23059		NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
111155	chr19	3305901	3306200	+	0	NA	Intergenic	MIRb|SINE|MIR	-53580	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
114476	chr19	12745221	12745900	+	0	NA	intron (NM_001371488, intron 4 of 7)	intron (NM_001371488, intron 4 of 7)	-6231	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
38602	chr11	46308451	46309350	+	0	NA	intron (NM_052854, intron 3 of 11)	intron (NM_052854, intron 3 of 11)	-24026	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
102351	chr17	75506721	75507180	+	0	NA	intron (NM_001142643, intron 4 of 18)	intron (NM_001142643, intron 4 of 18)	2940	NM_001142643	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
147779	chr20	62561401	62561680	+	0	NA	intron (NM_178463, intron 2 of 3)	intron (NM_178463, intron 2 of 3)	-3372	NR_029676	406923		NR_029676	ENSG00000284508	MIR133A2	MIRN133A2|mir-133a-2	microRNA 133a-2	ncRNA
133552	chr2	120675421	120675700	+	0	NA	Intergenic	Intergenic	-60308	NM_001374353	2736		NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
128352	chr2	54942301	54943000	+	0	NA	intron (NM_001039753, intron 27 of 40)	intron (NM_001039753, intron 27 of 40)	67622	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
49037	chr12	14381021	14381280	+	0	NA	intron (NM_001286515, intron 1 of 12)	HAL1|LINE|L1	-4131	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
118032	chr19	34220271	34221000	+	0	NA	intron (NM_001384432, intron 9 of 10)	intron (NM_001384432, intron 9 of 10)	-33919	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
175118	chr4	54794921	54795000	+	0	NA	Intergenic	Intergenic	137003	NM_001093772	3815		NM_000222	ENSG00000157404	KIT	C-Kit|CD117|MASTC|PBT|SCFR	KIT proto-oncogene, receptor tyrosine kinase	protein-coding
222530	chr8	140577171	140578000	+	0	NA	intron (NM_012154, intron 2 of 18)	intron (NM_012154, intron 2 of 18)	58048	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
180747	chr5	32020221	32020880	+	0	NA	intron (NM_178140, intron 6 of 24)	intron (NM_178140, intron 6 of 24)	-84391	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
51484	chr12	52082571	52082730	+	0	NA	intron (NM_001369216, intron 1 of 2)	intron (NM_001369216, intron 1 of 2)	-2096	NR_120439	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
113783	chr19	10548901	10549100	+	0	NA	exon (NM_001281504, exon 6 of 10)	exon (NM_001281504, exon 6 of 10)	-3122	NR_031603	100302226		NR_031603	ENSG00000221410	MIR1238	MIRN1238|hsa-mir-1238	microRNA 1238	ncRNA
10443	chr1	66251471	66251630	+	0	NA	intron (NM_001037340, intron 2 of 14)	intron (NM_001037340, intron 2 of 14)	-80558	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
60068	chr13	33610491	33611350	+	0	NA	intron (NM_001243476, intron 3 of 17)	intron (NM_001243476, intron 3 of 17)	65874	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
61766	chr13	74287701	74289150	+	0	NA	Intergenic	Intergenic	56981	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
39650	chr11	61582951	61583800	+	0	NA	Intergenic	Intergenic	-2299	NM_001370211	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
26784	chr10	23094901	23096270	+	0	NA	promoter-TSS (NM_012228)	promoter-TSS (NM_012228)	6	NM_012228	22921		NM_012228	ENSG00000148450	MSRB2	CBS-1|CBS1|CGI-131|MSRB|PILB	methionine sulfoxide reductase B2	protein-coding
171103	chr3	195504251	195504950	+	0	NA	Intergenic	Intergenic	38725	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
116774	chr19	18504401	18504600	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	17570	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
150825	chr21	44014671	44015200	+	0	NA	intron (NM_003274, intron 1 of 22)	intron (NM_003274, intron 1 of 22)	2626	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
113684	chr19	10400471	10400730	+	0	NA	intron (NM_007065, intron 1 of 7)	AluJb|SINE|Alu	2938	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
167198	chr3	128301171	128301530	+	0	NA	intron (NM_021937, intron 4 of 6)	L2c|LINE|L2	-147436	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
44410	chr11	103739051	103739630	+	0	NA	Intergenic	L1PA3|LINE|L1	-110566	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
218939	chr8	60924121	60924950	+	0	NA	Intergenic	Intergenic	-13737	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
98717	chr17	47980651	47980750	+	0	NA	exon (NM_001278197, exon 12 of 14)	exon (NM_001278197, exon 12 of 14)	9587	NM_001278198	80279		NM_025197	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding
30774	chr10	84339171	84339330	+	0	NA	intron (NM_001284241, intron 1 of 2)	AluJr|SINE|Alu	10661	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
219229	chr8	66916001	66916200	+	0	NA	intron (NM_173518, intron 14 of 14)	L2c|LINE|L2	6449	NR_002598	641648		NR_002598	ENSG00000254341	SNORD87	HBII-276|U87	small nucleolar RNA, C/D box 87	snoRNA
158120	chr22	50058051	50058150	+	0	NA	intron (NM_001350317, intron 1 of 13)	CpG	127	NM_001350317	164714		NM_001080447	ENSG00000138892	TTLL8	-	tubulin tyrosine ligase like 8	protein-coding
52686	chr12	56470201	56470550	+	0	NA	TTS (NM_001280798)	TTS (NM_001280798)	1797	NM_207344	283377		NM_207344	ENSG00000176422	SPRYD4	-	SPRY domain containing 4	protein-coding
227366	chr9	89487771	89487930	+	0	NA	intron (NM_001371194, intron 1 of 15)	L1ME2|LINE|L1	7806	NM_001371198	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
57670	chr12	122773101	122773550	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1247	NR_027918	84660		NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|SPGF67|TSP-NY	coiled-coil domain containing 62	protein-coding
30615	chr10	80201501	80202330	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	2576	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
67333	chr14	69639521	69639800	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	28064	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
15438	chr1	150295101	150295300	+	0	NA	intron (NM_031901, intron 2 of 2)	AluYh3|SINE|Alu	1339	NM_031901	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
224319	chr9	6706371	6706530	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-14413	NM_001146696	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
196430	chr6	43451971	43452480	+	0	NA	intron (NM_001286656, intron 4 of 5)	intron (NM_001286656, intron 4 of 5)	3323	NM_023932	65989		NM_023932	ENSG00000171462	DLK2	DLK-2|EGFL9	delta like non-canonical Notch ligand 2	protein-coding
1167	chr1	2213971	2214550	+	0	NA	Intergenic	Intergenic	-1540	NM_001282670	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
123981	chr19	55436321	55436880	+	0	NA	intron (NM_001145176, intron 3 of 3)	AluSg|SINE|Alu	6263	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
220817	chr8	102805771	102807880	+	0	NA	promoter-TSS (NR_149020)	promoter-TSS (NR_149020)	3	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
43601	chr11	83168201	83168530	+	0	NA	intron (NM_001346414, intron 7 of 15)	intron (NM_001346414, intron 7 of 15)	11234	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
93999	chr17	22524371	22524630	+	0	NA	3' UTR (NM_001190452, exon 1 of 1)	3' UTR (NM_001190452, exon 1 of 1)	1389	NM_001190452	100462977		NM_001190452		MTRNR2L1	HN1	MT-RNR2 like 1 (pseudogene)	pseudo
64968	chr14	36582371	36582530	+	0	NA	5' UTR (NM_014360, exon 1 of 2)	5' UTR (NM_014360, exon 1 of 2)	164	NM_014360	26257		NM_014360	ENSG00000136327	NKX2-8	NKX2.8|NKX2H|Nkx2-9	NK2 homeobox 8	protein-coding
116673	chr19	18397201	18397850	+	0	NA	promoter-TSS (NM_145256)	promoter-TSS (NM_145256)	97	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
49814	chr12	31979771	31979930	+	0	NA	intron (NM_018169, intron 3 of 5)	AluJb|SINE|Alu	20435	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
136621	chr2	179021151	179021450	+	0	NA	intron (NM_173648, intron 2 of 23)	intron (NM_173648, intron 2 of 23)	28837	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
148121	chr20	63450551	63450650	+	0	NA	intron (NM_001382235, intron 1 of 16)	intron (NM_001382235, intron 1 of 16)	22055	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
290	chr1	946621	947200	+	0	NA	intron (NM_015658, intron 14 of 18)	AluSx1|SINE|Alu	12346	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
176975	chr4	104772901	104773130	+	0	NA	Intergenic	L1MEd|LINE|L1	-278121	NM_025212	80319		NM_025212	ENSG00000168772	CXXC4	IDAX	CXXC finger protein 4	protein-coding
7797	chr1	36247451	36247950	+	0	NA	intron (NM_001321471, intron 2 of 12)	L1MA8|LINE|L1	23257	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
135240	chr2	159515471	159515630	+	0	NA	intron (NM_001289975, intron 2 of 35)	intron (NM_001289975, intron 2 of 35)	-99744	NR_110588	643072		NR_110587	ENSG00000224152	BAZ2B-AS1	lnc-BAZ2B	BAZ2B antisense RNA 1	ncRNA
177260	chr4	109427571	109427750	+	0	NA	Intergenic	Intergenic	-6055	NM_001042734	10427		NM_006323	ENSG00000138802	SEC24B	SEC24	SEC24 homolog B, COPII coat complex component	protein-coding
228953	chr9	113407921	113408250	+	0	NA	non-coding (NR_027261, exon 4 of 4)	non-coding (NR_027261, exon 4 of 4)	2590	NR_027261	54107		NM_017443	ENSG00000148229	POLE3	CHARAC17|CHRAC17|CHRAC2|YBL1|p17	DNA polymerase epsilon 3, accessory subunit	protein-coding
72889	chr15	40322071	40322430	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-1442	NM_001301268	100505573		NM_001301268	ENSG00000259330	INAFM2	LINC00984|OGU1	InaF motif containing 2	protein-coding
32516	chr10	102782751	102783050	+	0	NA	intron (NM_017787, intron 1 of 3)	intron (NM_017787, intron 1 of 3)	6679	NM_017787	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
224013	chr9	2764371	2764880	+	0	NA	Intergenic	Intergenic	47115	NM_133497	169522		NM_133497	ENSG00000168263	KCNV2	KV11.1|Kv8.2|RCD3B	potassium voltage-gated channel modifier subfamily V member 2	protein-coding
24868	chr10	789151	789600	+	0	NA	Intergenic	Intergenic	-99707	NM_014974	22982		NM_014974	ENSG00000151240	DIP2C	KIAA0934	disco interacting protein 2 homolog C	protein-coding
23618	chr1	230210101	230210700	+	0	NA	intron (NM_001291866, intron 3 of 15)	intron (NM_001291866, intron 3 of 15)	143162	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
225415	chr9	35059951	35060380	+	0	NA	intron (NM_001354927, intron 13 of 16)	intron (NM_001354927, intron 13 of 16)	12143	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
186055	chr5	134070871	134072150	+	0	NA	Intergenic	Intergenic	-43171	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
164119	chr3	56694671	56695650	+	0	NA	Intergenic	Intergenic	-11895	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
31112	chr10	89330001	89330400	+	0	NA	intron (NM_001549, intron 1 of 1)	MIRb|SINE|MIR	2203	NM_001289758	3437		NM_001549	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41	interferon induced protein with tetratricopeptide repeats 3	protein-coding
98925	chr17	48616351	48617050	+	0	NA	Intergenic	Intergenic	-1408	NM_024016	3218		NM_024016	ENSG00000120068	HOXB8	HOX2|HOX2D|Hox-2.4	homeobox B8	protein-coding
167166	chr3	128070421	128071480	+	0	NA	3' UTR (NM_013336, exon 12 of 12)	3' UTR (NM_013336, exon 12 of 12)	-4860	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
198385	chr6	105599621	105600000	+	0	NA	Intergenic	Intergenic	-196728	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
219047	chr8	65785171	65785900	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	3522	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
182448	chr5	62313801	62314200	+	0	NA	intron (NM_001243952, intron 2 of 20)	AluJr|SINE|Alu	7794	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
110441	chr19	1982201	1982800	+	0	NA	Intergenic	AluJr|SINE|Alu	-27951	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
227398	chr9	89528301	89528900	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-30487	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
50585	chr12	48442551	48442650	+	0	NA	Intergenic	Intergenic	-29959	NM_012404	23519		NM_012404	ENSG00000139223	ANP32D	PP32R2	acidic nuclear phosphoprotein 32 family member D	protein-coding
144326	chr20	34953871	34954380	+	0	NA	intron (NM_001322494, intron 1 of 12)	intron (NM_001322494, intron 1 of 12)	1510	NM_001322495	2937		NM_000178	ENSG00000100983	GSS	GSHS|HEL-S-64p|HEL-S-88n	glutathione synthetase	protein-coding
75316	chr15	65301951	65302600	+	0	NA	Intergenic	CpG	-2402	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
191315	chr6	6759251	6759350	+	0	NA	Intergenic	Intergenic	-136474	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
234969	chrX	39311651	39312030	+	0	NA	intron (NR_038968, intron 2 of 3)	intron (NR_038968, intron 2 of 3)	15522	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
228603	chr9	105129101	105129300	+	0	NA	Intergenic	Intergenic	-115405	NM_001330731	23446		NM_022109	ENSG00000070214	SLC44A1	CD92|CDW92|CHTL1|CONATOC|CTL1	solute carrier family 44 member 1	protein-coding
104967	chr17	81969071	81969750	+	0	NA	Intergenic	Intergenic	-8219	NM_001330528	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
135573	chr2	165796821	165797170	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2748	NM_004482	2591		NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HFTC1|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
29104	chr10	68333871	68334380	+	0	NA	intron (NM_001322437, intron 1 of 9)	intron (NM_001322437, intron 1 of 9)	-1197	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
24161	chr1	235866081	235867600	+	0	NA	promoter-TSS (NM_000081)	promoter-TSS (NM_000081)	66	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
225688	chr9	36487001	36489050	+	0	NA	Intergenic	CpG	-84837	NR_046337	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
74599	chr15	60575051	60575480	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	17261	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
237916	chrX	131985751	131986350	+	0	NA	Intergenic	Intergenic	-37252	NM_001042453	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
58742	chr12	132603371	132603550	+	0	NA	intron (NM_001195520, intron 5 of 5)	CpG	7122	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
142546	chr20	5116051	5117580	+	0	NA	intron (NM_182649, intron 4 of 5)	AluSx|SINE|Alu	-2771	NR_028370	100302739		NR_028370		PCNA-AS1	PCNA-AS|PCNAAS	PCNA antisense RNA 1	ncRNA
121561	chr19	47261201	47261650	+	0	NA	intron (NM_015603, intron 5 of 11)	intron (NM_015603, intron 5 of 11)	4900	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
193862	chr6	31559891	31560780	+	0	NA	non-coding (NR_149045, exon 2 of 2)	non-coding (NR_149045, exon 2 of 2)	-11764	NM_001159740	4049		NM_000595	ENSG00000226979	LTA	LT|TNFB|TNFSF1|TNLG1E	lymphotoxin alpha	protein-coding
35085	chr11	623621	624450	+	0	NA	intron (NM_001171968, intron 3 of 14)	L2a|LINE|L2	920	NM_001171968	53841		NM_017717	ENSG00000099834	CDHR5	MLPCDH|MU-PCDH|MUCDHL|MUPCDH	cadherin related family member 5	protein-coding
115521	chr19	15432151	15433930	+	0	NA	promoter-TSS (NM_001330395)	promoter-TSS (NM_001330395)	-279	NM_001371603	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
205020	chr7	6500251	6500350	+	0	NA	intron (NM_001145118, intron 20 of 21)	AluSx3|SINE|Alu	-16148	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
221252	chr8	122734451	122734550	+	0	NA	Intergenic	Intergenic	-40394	NR_126348	104266958		NR_126348		LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA
57521	chr12	122130351	122130450	+	0	NA	intron (NM_014938, intron 6 of 16)	intron (NM_014938, intron 6 of 16)	-37319	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
124289	chr19	57847421	57847680	+	0	NA	Intergenic	MER41B|LTR|ERV1	-2309	NM_032828	84914		NM_017961	ENSG00000198466	ZNF587	ZF6	zinc finger protein 587	protein-coding
25421	chr10	6565171	6565330	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	15026	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
86248	chr16	58264821	58265650	+	0	NA	intron (NM_001142302, intron 5 of 7)	MLT1E3|LTR|ERVL-MaLR	15299	NM_001142302	29070		NM_014157	ENSG00000103021	CFAP263	CCDC113|HSPC065	cilia and flagella associated protein 263	protein-coding
21429	chr1	205339621	205340180	+	0	NA	intron (NM_001271863, intron 5 of 8)	intron (NM_001271863, intron 5 of 8)	17022	NM_018203	55220		NM_018203	ENSG00000162873	KLHDC8A	-	kelch domain containing 8A	protein-coding
64324	chr14	23654201	23654400	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	17936	NM_005794	10202		NM_005794	ENSG00000100867	DHRS2	HEP27|SDR25C1	dehydrogenase/reductase 2	protein-coding
185906	chr5	132780671	132780830	+	0	NA	Intergenic	HAL1b|LINE|L1	-2881	NM_001098813	23176		NM_015146	ENSG00000164402	SEPTIN8	SEP2|SEPT8|Septin-8	septin 8	protein-coding
122514	chr19	49597151	49597450	+	0	NA	exon (NM_020719, exon 4 of 14)	exon (NM_020719, exon 4 of 14)	6118	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
70472	chr14	102072451	102073250	+	0	NA	Intergenic	Intergenic	14194	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
106125	chr18	9226471	9226630	+	0	NA	intron (NM_001204056, intron 7 of 11)	intron (NM_001204056, intron 7 of 11)	88987	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
155427	chr22	38451401	38452250	+	0	NA	intron (NM_152868, intron 1 of 1)	MIR3|SINE|MIR	3374	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
102678	chr17	76105721	76105980	+	0	NA	Intergenic	AluSg|SINE|Alu	-2063	NM_001375976	23265		NM_015219	ENSG00000182473	EXOC7	2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|NEDSEBA|YJL085W	exocyst complex component 7	protein-coding
119244	chr19	39480271	39481830	+	0	NA	intron (NM_001329559, intron 1 of 9)	CpG	212	NM_001001563	92609		NM_001001563	ENSG00000105197	TIMM50	MGCA9|TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
67654	chr14	73080921	73081180	+	0	NA	intron (NM_021239, intron 4 of 18)	AluSx1|SINE|Alu	22516	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
56729	chr12	120121301	120122750	+	0	NA	Intergenic	AluJr|SINE|Alu	-5272	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
185656	chr5	131551871	131552930	+	0	NA	intron (NM_016340, intron 5 of 27)	intron (NM_016340, intron 5 of 27)	82829	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
134062	chr2	131491701	131493750	+	0	NA	promoter-TSS (NR_026922)	promoter-TSS (NR_026922)	-88	NR_026922	150776		NR_026922	ENSG00000293311	SMPD4BP	-	sphingomyelin phosphodiesterase 4B, pseudogene	pseudo
150547	chr21	43077451	43077750	+	0	NA	promoter-TSS (NM_001354006)	promoter-TSS (NM_001354006)	-657	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
218751	chr8	58891451	58891930	+	0	NA	intron (NM_014729, intron 3 of 8)	intron (NM_014729, intron 3 of 8)	227457	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
152829	chr22	21946571	21946930	+	0	NA	intron (NM_014634, intron 1 of 7)	intron (NM_014634, intron 1 of 7)	6098	NM_014634	9647		NM_014634	ENSG00000100034	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent 1F	protein-coding
166401	chr3	113560171	113560330	+	0	NA	intron (NM_001322297, intron 1 of 24)	intron (NM_001322297, intron 1 of 24)	27695	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
58308	chr12	130878101	130878800	+	0	NA	TTS (NM_006325)	TTS (NM_006325)	6384	NM_006325	5901		NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
228704	chr9	109011471	109011630	+	0	NA	intron (NM_001286974, intron 1 of 18)	intron (NM_001286974, intron 1 of 18)	1949	NM_001286974	8727		NM_003798	ENSG00000119326	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin alpha like 1	protein-coding
110337	chr19	1872151	1872750	+	0	NA	Intergenic	Intergenic	-8871	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
156684	chr22	41665571	41665830	+	0	NA	Intergenic	AluSx3|SINE|Alu	23167	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
108109	chr18	62189471	62189630	+	0	NA	intron (NR_144408, intron 1 of 32)	intron (NR_144408, intron 1 of 32)	2295	NR_144403	57614		NM_020854	ENSG00000134444	RELCH	HsT3308|HsT885|KIAA1468	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	protein-coding
219404	chr8	70607271	70607900	+	0	NA	promoter-TSS (NM_001317805)	promoter-TSS (NM_001317805)	84	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
238107	chrX	136626871	136627700	+	0	NA	Intergenic	Intergenic	-12258	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
229451	chr9	121559201	121559400	+	0	NA	Intergenic	Intergenic	-7802	NM_032552	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
211398	chr7	105028971	105029400	+	0	NA	intron (NM_182931, intron 1 of 26)	AluSz|SINE|Alu	14980	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
145319	chr20	41076601	41077050	+	0	NA	intron (NM_003286, intron 4 of 20)	L1ME4b|LINE|L1	48003	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
44657	chr11	110376771	110377280	+	0	NA	intron (NR_135100, intron 2 of 3)	MER57B2|LTR|ERV1	21911	NR_135100	105369486		NR_135100		LINC02732	-	long intergenic non-protein coding RNA 2732	ncRNA
165126	chr3	71719251	71719350	+	0	NA	intron (NM_173359, intron 2 of 7)	intron (NM_173359, intron 2 of 7)	6102	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
170473	chr3	185933101	185934380	+	0	NA	intron (NM_004593, intron 1 of 8)	intron (NM_004593, intron 1 of 8)	4274	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
197182	chr6	63571521	63572800	+	0	NA	promoter-TSS (NM_001385262)	promoter-TSS (NM_001385262)	-320	NM_001385267	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
55811	chr12	108736271	108736630	+	0	NA	Intergenic	Intergenic	-4932	NM_014325	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
80918	chr16	3790671	3791030	+	0	NA	intron (NM_001079846, intron 4 of 29)	intron (NM_001079846, intron 4 of 29)	-73326	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
51819	chr12	53443501	53443700	+	0	NA	exon (NM_018457, exon 3 of 4)	exon (NM_018457, exon 3 of 4)	1866	NM_018457	54458		NM_018457	ENSG00000205352	PRR13	TXR1	proline rich 13	protein-coding
32712	chr10	104209621	104209880	+	0	NA	intron (NM_025145, intron 5 of 37)	intron (NM_025145, intron 5 of 37)	9133	NR_030340	693194		NR_030340	ENSG00000208033	MIR609	MIRN609|hsa-mir-609	microRNA 609	ncRNA
120057	chr19	42066821	42067080	+	0	NA	Intergenic	Intergenic	-1135	NM_001301030	2901		NM_002088	ENSG00000105737	GRIK5	EAA2|GRIK2|GluK5|KA2	glutamate ionotropic receptor kainate type subunit 5	protein-coding
207060	chr7	39737071	39737380	+	0	NA	intron (NR_026999, intron 1 of 11)	intron (NR_026999, intron 1 of 11)	3657	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
117561	chr19	21140601	21141130	+	0	NA	Intergenic	Intergenic	-1175	NM_001319126	170959		NM_133473	ENSG00000196705	ZNF431	ZFP932	zinc finger protein 431	protein-coding
100581	chr17	63406571	63407180	+	0	NA	intron (NM_025185, intron 20 of 25)	intron (NM_025185, intron 20 of 25)	33392	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
1537	chr1	3372221	3372750	+	0	NA	intron (NM_199454, intron 3 of 16)	intron (NM_199454, intron 3 of 16)	-82180	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
43309	chr11	76214901	76215330	+	0	NA	Intergenic	Intergenic	-8613	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
210080	chr7	96836521	96836900	+	0	NA	Intergenic	Intergenic	-126819	NM_006304	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
163886	chr3	52513471	52513630	+	0	NA	intron (NM_015136, intron 30 of 68)	intron (NM_015136, intron 30 of 68)	18212	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
142742	chr20	10431451	10431750	+	0	NA	intron (NM_170784, intron 1 of 5)	intron (NM_170784, intron 1 of 5)	325	NM_018848	8195		NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	MKKS centrosomal shuttling protein	protein-coding
153673	chr22	29031271	29031630	+	0	NA	promoter-TSS (NR_046851)	promoter-TSS (NR_046851)	26	NR_046851	100874123		NR_046851	ENSG00000177993	ZNRF3-AS1	-	ZNRF3 antisense RNA 1	ncRNA
217252	chr8	27307271	27307630	+	0	NA	intron (NM_171982, intron 1 of 5)	intron (NM_171982, intron 1 of 5)	3822	NM_001362813	23087		NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
34030	chr10	124719101	124720530	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	15787	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
138735	chr2	213246621	213246990	+	0	NA	Intergenic	Intergenic	37404	NR_161186	100130451		NR_144752		SPAG16-DT	-	SPAG16 divergent transcript	ncRNA
6925	chr1	31662571	31662930	+	0	NA	intron (NM_001856, intron 56 of 70)	intron (NM_001856, intron 56 of 70)	-17874	NM_012392	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
16159	chr1	153730401	153730750	+	0	NA	intron (NM_001324475, intron 2 of 30).2	intron (NM_001324475, intron 2 of 30).2	2525	NM_023015	65123		NM_023015	ENSG00000143624	INTS3	C1orf193|C1orf60|INT3|SOSS-A|SOSSA	integrator complex subunit 3	protein-coding
47327	chr12	1798601	1799680	+	0	NA	intron (NM_172364, intron 34 of 37)	intron (NM_172364, intron 34 of 37)	-21127	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
58546	chr12	132244771	132245130	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-30441	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
74463	chr15	59741451	59741550	+	0	NA	Intergenic	Intergenic	-52180	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
114839	chr19	13829921	13831880	+	0	NA	exon (NM_001367834, exon 14 of 14)	exon (NM_001367834, exon 14 of 14)	5459	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
55118	chr12	98566971	98567680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26300	NM_005888	5250		NM_002635	ENSG00000075415	SLC25A3	OK/SW-cl.48|PHC|PTP|PiC	solute carrier family 25 member 3	protein-coding
75788	chr15	68814571	68814730	+	0	NA	intron (NM_006305, intron 1 of 6)	intron (NM_006305, intron 1 of 6)	6245	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
147797	chr20	62644171	62644530	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	1847	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
98209	chr17	46135671	46136430	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	56732	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
162078	chr3	46879621	46880030	+	0	NA	intron (NM_000316, intron 1 of 15)	AluSz6|SINE|Alu	2104	NM_000316	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
157467	chr22	45284601	45285830	+	0	NA	intron (NM_001167574, intron 1 of 3)	intron (NM_001167574, intron 1 of 3)	266	NM_001167574	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
84018	chr16	29467031	29467550	+	0	NA	non-coding (NR_002556, exon 1 of 5)	non-coding (NR_002556, exon 1 of 5)	288	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
92607	chr17	9905921	9906180	+	0	NA	promoter-TSS (NM_002903)	promoter-TSS (NM_002903)	-779	NM_002903	5957		NM_002903	ENSG00000109047	RCVRN	RCV1	recoverin	protein-coding
75123	chr15	64536101	64536430	+	0	NA	intron (NM_015042, intron 2 of 9)	AluJr|SINE|Alu	75687	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
78106	chr15	90275001	90275200	+	0	NA	Intergenic	CpG	-9341	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
38979	chr11	47577301	47577750	+	0	NA	exon (NM_001318722, exon 2 of 4)	exon (NM_001318722, exon 2 of 4)	1246	NM_001318725	55709		NM_016506	ENSG00000123444	KBTBD4	BKLHD4|HSPC252	kelch repeat and BTB domain containing 4	protein-coding
156783	chr22	41902121	41902600	+	0	NA	intron (NR_103834, intron 19 of 21)	MIRb|SINE|MIR	1416	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
159580	chr3	15057051	15057150	+	0	NA	intron (NR_135246, intron 2 of 4)	ERV3-16A3_LTR|LTR|ERVL	8215	NR_135247	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
129275	chr2	68413571	68413930	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	48468	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
149581	chr21	33256101	33256500	+	0	NA	intron (NM_001289128, intron 7 of 7)	Charlie29a|DNA|hAT-Charlie	9960	NR_038974	100288432		NR_038974		IL10RB-DT	IFNAR2-AS1|IL10RB-AS1	IL10RB divergent transcript	ncRNA
232666	chr9	136505521	136506100	+	0	NA	exon (NM_017617, exon 25 of 34)	exon (NM_017617, exon 25 of 34)	13816	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
198559	chr6	106973371	106973850	+	0	NA	intron (NR_117089, intron 1 of 1)	CpG	429	NM_001291739	100133941		NM_013230	ENSG00000272398	CD24	CD24A	CD24 molecule	protein-coding
49489	chr12	25247321	25247830	+	0	NA	intron (NM_001369786, intron 1 of 5)	intron (NM_001369786, intron 1 of 5)	3354	NM_033360	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
208438	chr7	66847651	66848130	+	0	NA	intron (NR_135738, intron 1 of 6)	AluSx1|SINE|Alu	440	NR_135738	101929580		NR_135738		GTF2IP23	-	general transcription factor IIi pseudogene 23	pseudo
39417	chr11	60859921	60860180	+	0	NA	Intergenic	Intergenic	-4100	NM_004778	11251		NM_004778	ENSG00000183134	PTGDR2	CD294|CRTH2|DL1R|DP2|GPR44	prostaglandin D2 receptor 2	protein-coding
201635	chr6	149457951	149458250	+	0	NA	intron (NM_207360, intron 3 of 5)	AluJb|SINE|Alu	26914	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
94839	chr17	31486571	31486930	+	0	NA	intron (NM_032932, intron 3 of 14)	intron (NM_032932, intron 3 of 14)	-1358	NM_001303542	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
132160	chr2	101756171	101756950	+	0	NA	intron (NM_001384572, intron 1 of 29)	AluJb|SINE|Alu	58295	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
3999	chr1	18919621	18919950	+	0	NA	intron (NM_001136265, intron 2 of 8)	intron (NM_001136265, intron 2 of 8)	-16986	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
118266	chr19	35264401	35264880	+	0	NA	intron (NM_205834, intron 5 of 9)	intron (NM_205834, intron 5 of 9)	-4322	NM_001321150	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
153774	chr22	29577871	29578230	+	0	NA	intron (NM_001202502, intron 1 of 9)	AluSg|SINE|Alu	3046	NM_001202502	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
30930	chr10	87264671	87264830	+	0	NA	intron (NR_024397, intron 4 of 5)	L1PA16|LINE|L1	39302	NM_001099338	728118		NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
63652	chr14	20988301	20988500	+	0	NA	Intergenic	Intergenic	-1580	NM_001029991	64745		NM_022734	ENSG00000165792	METTL17	METT11D1	methyltransferase like 17	protein-coding
220254	chr8	97643321	97644900	+	0	NA	promoter-TSS (NM_001363139)	promoter-TSS (NM_001363139)	-74	NM_178812	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
79227	chr16	372521	373650	+	0	NA	intron (NM_021259, intron 11 of 12)	intron (NM_021259, intron 11 of 12)	-2547	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
210201	chr7	99032771	99033130	+	0	NA	non-coding (NR_110102, exon 5 of 6)	non-coding (NR_110102, exon 5 of 6)	19785	NR_110102	101927550		NR_110102		LOC101927550	-	uncharacterized LOC101927550	ncRNA
69023	chr14	91645551	91645850	+	0	NA	intron (NM_024764, intron 15 of 26).2	L1PA2|LINE|L1	86386	NM_024764	79820		NM_024764	ENSG00000133962	CATSPERB	C14orf161|CatSper(beta)	cation channel sperm associated auxiliary subunit beta	protein-coding
159669	chr3	15379201	15379430	+	0	NA	Intergenic	Intergenic	-37935	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
195744	chr6	39563721	39563800	+	0	NA	intron (NM_145027, intron 10 of 22)	intron (NM_145027, intron 10 of 22)	-132370	NM_001351566	221458		NM_145027	ENSG00000164627	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
66008	chr14	58247071	58247230	+	0	NA	intron (NR_038123, intron 1 of 9)	L2a|LINE|L2	2307	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
155652	chr22	39002921	39004080	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-5280	NR_104187	100874530		NR_104187	ENSG00000249310	APOBEC3B-AS1	-	APOBEC3B antisense RNA 1	ncRNA
126745	chr2	30224301	30224630	+	0	NA	Intergenic	Intergenic	-7069	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
72414	chr15	31437751	31438550	+	0	NA	Intergenic	Intergenic	111315	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
133756	chr2	127591221	127591700	+	0	NA	intron (NM_001080527, intron 16 of 46)	MIRb|SINE|MIR	-20498	NR_132317	105373609		NR_132317		LOC105373609	-	uncharacterized LOC105373609	ncRNA
134236	chr2	134949951	134950350	+	0	NA	intron (NR_135468, intron 8 of 9)	intron (NR_135468, intron 8 of 9)	31328	NM_001320749	905		NM_001241	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
28517	chr10	50396521	50397730	+	0	NA	intron (NM_147156, intron 6 of 10)	intron (NM_147156, intron 6 of 10)	-145609	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
162934	chr3	49468151	49468700	+	0	NA	promoter-TSS (NM_001177643)	promoter-TSS (NM_001177643)	-278	NM_001177643	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
29092	chr10	68074301	68076230	+	0	NA	promoter-TSS (NM_015601)	promoter-TSS (NM_015601)	18	NM_015601	26091		NM_015601	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
32224	chr10	101816671	101816930	+	0	NA	intron (NM_001142434, intron 1 of 14)	intron (NM_001142434, intron 1 of 14)	1644	NM_012215	10724		NM_012215	ENSG00000198408	OGA	MEA5|MGEA5|NCOAT	O-GlcNAcase	protein-coding
151288	chr21	45502001	45502630	+	0	NA	intron (NM_001379500, intron 32 of 41)	intron (NM_001379500, intron 32 of 41)	24049	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
235400	chrX	45187001	45187480	+	0	NA	intron (NM_024689, intron 2 of 2)	intron (NM_024689, intron 2 of 2)	13636	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
178492	chr4	150250901	150251780	+	0	NA	intron (NM_001040261, intron 16 of 16)	intron (NM_001040261, intron 16 of 16)	172895	NR_036614	166614		NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
127155	chr2	37890851	37891530	+	0	NA	Intergenic	Intergenic	-15327	NR_110012	101929559		NR_110011	ENSG00000237803	PIRAT1	LINC00211|NCRNA00211|PIRAT	PU.1 (SPI1) induced regulator of S100A8 and S100A9 alarmin transcription 1	ncRNA
183574	chr5	80156601	80156800	+	0	NA	intron (NM_001174072, intron 8 of 11)	intron (NM_001174072, intron 8 of 11)	-73035	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
174964	chr4	49334671	49335050	+	0	NA	Intergenic	TAR1|Satellite|telo	348218	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
155902	chr22	39544071	39544500	+	0	NA	Intergenic	AluSx|SINE|Alu	-11537	NM_194326	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
232698	chr9	136542451	136542550	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	3548	NM_017617	4851		NM_017617	ENSG00000148400	NOTCH1	AOS5|AOVD1|TAN1|hN1	notch receptor 1	protein-coding
189780	chr5	176674721	176674980	+	0	NA	Intergenic	L1MB7|LINE|L1	27366	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
62166	chr13	97261471	97262230	+	0	NA	intron (NM_001382682, intron 1 of 7)	intron (NM_001382682, intron 1 of 7)	39517	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
35959	chr11	2774971	2775330	+	0	NA	intron (NM_181798, intron 12 of 15)	intron (NM_181798, intron 12 of 15)	-75152	NR_002728	10984		NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1	ncRNA
186583	chr5	138499801	138500330	+	0	NA	Intergenic	FRAM|SINE|Alu	34586	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
31951	chr10	100669451	100670400	+	0	NA	Intergenic	Intergenic	-65471	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
102800	chr17	76390351	76390650	+	0	NA	3' UTR (NM_022066, exon 18 of 18)	3' UTR (NM_022066, exon 18 of 18)	5222	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
158218	chr22	50267401	50268250	+	0	NA	non-coding (NR_110887, exon 2 of 13)	non-coding (NR_110887, exon 2 of 13)	2555	NM_002751	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
118298	chr19	35358001	35358400	+	0	NA	promoter-TSS (NM_005304)	promoter-TSS (NM_005304)	-260	NM_005304	2865		NM_005304	ENSG00000185897	FFAR3	FFA3R|GPR41|GPR42	free fatty acid receptor 3	protein-coding
61562	chr13	66994301	66994500	+	0	NA	intron (NR_046637, intron 1 of 2)	LTR50|LTR|ERVL	3514	NR_046637	100874087		NR_046637	ENSG00000233840	PCDH9-AS4	-	PCDH9 antisense RNA 4	ncRNA
211366	chr7	104996451	104997200	+	0	NA	Intergenic	Intergenic	-5660	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
17916	chr1	160210971	160211530	+	0	NA	intron (NM_001297576, intron 3 of 5)	intron (NM_001297576, intron 3 of 5)	-2381	NR_123725	729867		NR_123725	ENSG00000227741	LOC729867	-	uncharacterized LOC729867	ncRNA
231131	chr9	129841001	129841200	+	0	NA	intron (NM_001008563, intron 1 of 25)	MLT1B|LTR|ERVL-MaLR	5642	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
225326	chr9	34618351	34618680	+	0	NA	intron (NM_024348, intron 2 of 6)	intron (NM_024348, intron 2 of 6)	1980	NM_007234	11258		NM_007234	ENSG00000137100	DCTN3	DCTN-22|DCTN22	dynactin subunit 3	protein-coding
1835	chr1	6254201	6254600	+	0	NA	intron (NM_207370, intron 2 of 5)	intron (NM_207370, intron 2 of 5)	6698	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
46530	chr11	128460201	128460400	+	0	NA	3' UTR (NM_001330451, exon 7 of 7)	3' UTR (NM_001330451, exon 7 of 7)	62010	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
145013	chr20	37745501	37745780	+	0	NA	intron (NM_030877, intron 3 of 15)	MIR|SINE|MIR	51610	NM_030877	56259		NM_030877	ENSG00000132792	CTNNBL1	C20orf33|IMD99|NAP|P14L|PP8304|dJ633O20.1	catenin beta like 1	protein-coding
114765	chr19	13721371	13721530	+	0	NA	Intergenic	L2|LINE|L2	-10302	NM_001320566	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
144415	chr20	35305771	35305930	+	0	NA	intron (NM_199487, intron 8 of 8)	intron (NM_199487, intron 8 of 8)	-13425	NM_178468	128876		NM_178468	ENSG00000125998	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83 member C	protein-coding
71616	chr14	106681601	106681850	+	0	NA	Intergenic	Intergenic	169274	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
208867	chr7	73729301	73729900	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5469	NR_026690	171022		NR_026690		ABHD11-AS1	LINC00035|NCRNA00035|WBSCR26	ABHD11 antisense RNA 1 (tail to tail)	ncRNA
138869	chr2	216850721	216850980	+	0	NA	Intergenic	Intergenic	9214	NM_003284	7141		NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1	protein-coding
54559	chr12	92186001	92186350	+	0	NA	TTS (NR_135036)	TTS (NR_135036)	40090	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
195643	chr6	37863601	37863800	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	43973	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
163507	chr3	51389251	51389800	+	0	NA	TTS (NM_006010)	TTS (NM_006010)	-1760	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
99096	chr17	49013451	49013550	+	0	NA	intron (NM_001160423, intron 2 of 12)	intron (NM_001160423, intron 2 of 12)	16115	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
96584	chr17	40513801	40514000	+	0	NA	Intergenic	Intergenic	-12277	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
175220	chr4	56871321	56871580	+	0	NA	Intergenic	Intergenic	-36450	NM_005612	5978		NM_005612	ENSG00000084093	REST	DFNA27|GINGF5|HGF5|NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
219172	chr8	66522871	66523430	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	29584	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
61291	chr13	50208721	50209030	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	36857	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
65299	chr14	50064871	50066030	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	39593	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
176641	chr4	99893971	99895250	+	0	NA	promoter-TSS (NR_024170)	promoter-TSS (NR_024170)	-64	NR_024170	8649		NM_021970	ENSG00000109270	LAMTOR3	MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding
42246	chr11	68118971	68119500	+	0	NA	intron (NM_212469, intron 1 of 10)	intron (NM_212469, intron 1 of 10)	2153	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
205593	chr7	21542971	21543130	+	0	NA	promoter-TSS (NM_001277115)	promoter-TSS (NM_001277115)	11	NM_001277115	8701		NM_001277115	ENSG00000105877	DNAH11	CILD7|DNAHBL|DNAHC11|DNHBL|DPL11	dynein axonemal heavy chain 11	protein-coding
191426	chr6	10424071	10424330	+	0	NA	Intergenic	Intergenic	-4140	NM_001042425	7020		NM_003220	ENSG00000137203	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha	protein-coding
187410	chr5	141958021	141958750	+	0	NA	promoter-TSS (NM_016580)	promoter-TSS (NM_016580)	-183	NM_016580	51294		NM_016580	ENSG00000113555	PCDH12	DMJDS1|VE-cadherin-2|VECAD2	protocadherin 12	protein-coding
141008	chr2	238159871	238160030	+	0	NA	intron (NM_001291832, intron 1 of 7)	intron (NM_001291832, intron 1 of 7)	980	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
15793	chr1	151254021	151256050	+	0	NA	intron (NM_002810, intron 1 of 9)	intron (NM_002810, intron 1 of 9)	301	NM_001330692	5710		NM_002810	ENSG00000159352	PSMD4	AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5	proteasome 26S subunit ubiquitin receptor, non-ATPase 4	protein-coding
124853	chr2	7847801	7848000	+	0	NA	Intergenic	Intergenic	51755	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
144688	chr20	36454371	36454730	+	0	NA	intron (NM_001365621, intron 7 of 12)	intron (NM_001365621, intron 7 of 12)	-6918	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
157838	chr22	48080521	48080980	+	0	NA	Intergenic	Intergenic	-193614	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	ncRNA
100306	chr17	59800701	59801130	+	0	NA	intron (NM_030938, intron 7 of 11)	AluSg|SINE|Alu	-40351	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
82993	chr16	22099001	22099580	+	0	NA	intron (NM_173615, intron 3 of 33).2	MER113|DNA|hAT-Charlie	6749	NM_173615	146177		NM_173615	ENSG00000175267	VWA3A	-	von Willebrand factor A domain containing 3A	protein-coding
222362	chr8	133568221	133569200	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	3177	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
150568	chr21	43110151	43110250	+	0	NA	Intergenic	ERV24_Prim-int|LTR|ERV1	-2594	NM_001320651	102724594		NM_001320646	ENSG00000275895	LOC102724594	U2AF1L5	U2 small nuclear RNA auxiliary factor 1 like 5	protein-coding
208361	chr7	66589801	66590100	+	0	NA	intron (NR_111977, intron 1 of 5)	AluJb|SINE|Alu	2457	NR_111978	493754		NR_002933	ENSG00000291136	RABGEF1P1	GS1-124K5.11	RABGEF1 pseudogene 1	pseudo
78288	chr15	90884251	90885380	+	0	NA	promoter-TSS (NM_001143784)	promoter-TSS (NM_001143784)	-231	NM_001143783	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
70970	chr14	104699971	104700380	+	0	NA	intron (NM_032714, intron 1 of 4)	intron (NM_032714, intron 1 of 4)	10557	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
82822	chr16	21490401	21490730	+	0	NA	intron (NR_027155, intron 1 of 28)	AluJb|SINE|Alu	-10961	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
196375	chr6	43250521	43250780	+	0	NA	intron (NM_032538, intron 2 of 14)	AluSq2|SINE|Alu	7169	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
125374	chr2	11152371	11152880	+	0	NA	Intergenic	Intergenic	-2747	NM_001282710	130814		NM_152391	ENSG00000162976	SLC66A3	C2orf22|PQLC3	solute carrier family 66 member 3	protein-coding
223604	chr8	144308721	144309480	+	0	NA	intron (NM_005526, intron 2 of 12)	intron (NM_005526, intron 2 of 12)	8215	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
213651	chr7	139771321	139771580	+	0	NA	intron (NM_022740, intron 1 of 14)	intron (NM_022740, intron 1 of 14)	6548	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
196840	chr6	47308771	47308930	+	0	NA	intron (NM_014452, intron 1 of 5)	CpG	1055	NM_014452	27242		NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
24667	chr1	247114171	247114500	+	0	NA	Intergenic	Intergenic	-1918	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
202230	chr6	156819901	156820100	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-40269	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
23817	chr1	234473221	234473500	+	0	NA	intron (NM_005646, intron 1 of 29)	HAL1|LINE|L1	5819	NM_005646	6894		NM_005646	ENSG00000059588	TARBP1	TRM3|TRMT3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
78939	chr15	101268371	101268530	+	0	NA	Intergenic	Intergenic	9035	NM_018445	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
5067	chr1	24666801	24667200	+	0	NA	intron (NR_159382, intron 14 of 17)	U13_|snRNA|snRNA	23421	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
31248	chr10	91932751	91933250	+	0	NA	intron (NR_165093, intron 2 of 40)	intron (NR_165093, intron 2 of 40)	9230	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
204198	chr7	2500851	2501150	+	0	NA	Intergenic	AluSq2|SINE|Alu	-11529	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
180796	chr5	32280501	32281180	+	0	NA	intron (NM_001294344, intron 1 of 13)	intron (NM_001294344, intron 1 of 13)	32099	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
63725	chr14	21209621	21210080	+	0	NA	3' UTR (NM_031314, exon 9 of 9)	3' UTR (NM_031314, exon 9 of 9)	-2950	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
69393	chr14	94043071	94043450	+	0	NA	intron (NM_023112, intron 3 of 5)	intron (NM_023112, intron 3 of 5)	16920	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
136508	chr2	177241271	177242330	+	0	NA	intron (NM_001313902, intron 1 of 3)	AluJr|SINE|Alu	14210	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
213901	chr7	142477951	142478050	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	3473	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
223954	chr9	1048871	1049030	+	0	NA	TTS (NR_110643)	TTS (NR_110643)	807	NR_110643	102800446		NR_110643		LINC01230	TCONS_00015639|linc-DMRT2|lnc-DRMT2	long intergenic non-protein coding RNA 1230	ncRNA
45682	chr11	119047071	119047430	+	0	NA	intron (NM_006389, intron 22 of 25)	AluSc|SINE|Alu	9955	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
234806	chrX	24024811	24026180	+	0	NA	intron (NM_030624, intron 1 of 3)	CpG-29535	1691	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
1253	chr1	2295801	2296380	+	0	NA	intron (NM_003036, intron 1 of 6)	L1MB7|LINE|L1	56571	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
149306	chr21	28991021	28991380	+	0	NA	intron (NM_001320766, intron 1 of 28)	AluJb|SINE|Alu	1677	NM_015565	26046		NM_015565	ENSG00000198862	LTN1	C21orf10|C21orf98|RNF160|ZNF294	listerin E3 ubiquitin protein ligase 1	protein-coding
223703	chr8	144439721	144439980	+	0	NA	TTS (NR_109770)	TTS (NR_109770)	-4231	NR_106953	102466271		NR_106953	ENSG00000276598	MIR6893	hsa-mir-6893	microRNA 6893	ncRNA
74070	chr15	52588901	52589130	+	0	NA	intron (NR_169538, intron 10 of 12)	intron (NR_169538, intron 10 of 12)	-19569	NM_001306191	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
185869	chr5	132629401	132629880	+	0	NA	TTS (NR_132124)	TTS (NR_132124)	12150	NR_132124	101927761		NR_132124	ENSG00000223442	TH2LCRR	TH2-LCR	T helper type 2 locus control region associated RNA	ncRNA
155535	chr22	38705151	38707100	+	0	NA	exon (NM_004286, exon 1 of 12)	exon (NM_004286, exon 1 of 12)	181	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
10484	chr1	66360271	66360630	+	0	NA	intron (NM_001037340, intron 7 of 14)	intron (NM_001037340, intron 7 of 14)	5915	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
202384	chr6	157826371	157826530	+	0	NA	intron (NM_016224, intron 1 of 17)	AluY|SINE|Alu	3204	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
211730	chr7	107103401	107103780	+	0	NA	intron (NM_002736, intron 2 of 10)	L1M4a2|LINE|L1	58885	NM_002736	5577		NM_002736	ENSG00000005249	PRKAR2B	PRKAR2|RII-BETA	protein kinase cAMP-dependent type II regulatory subunit beta	protein-coding
104948	chr17	81952051	81952780	+	0	NA	TTS (NM_178493)	TTS (NM_178493)	-5182	NM_001145113	255275		NM_001145113	ENSG00000185105	MYADML2	-	myeloid associated differentiation marker like 2	protein-coding
51443	chr12	52040471	52040930	+	0	NA	intron (NM_001202234, intron 1 of 7)	intron (NM_001202234, intron 1 of 7)	2985	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
130015	chr2	74180201	74180400	+	0	NA	Intergenic	AluJb|SINE|Alu	-1421	NM_001317110	55233		NM_018221	ENSG00000114978	MOB1A	C2orf6|MABKL1B|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B	MOB kinase activator 1A	protein-coding
2914	chr1	11692871	11693800	+	0	NA	intron (NM_198545, intron 1 of 6)	intron (NM_198545, intron 1 of 6)	1625	NM_198545	374946		NM_198545	ENSG00000162490	DRAXIN	AGPA3119|C1orf187|UNQ3119|neucrin	dorsal inhibitory axon guidance protein	protein-coding
23034	chr1	226443651	226443950	+	0	NA	Intergenic	Intergenic	-35707	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
86112	chr16	57660771	57661130	+	0	NA	intron (NM_001370440, intron 13 of 14)	intron (NM_001370440, intron 13 of 14)	-7356	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
216522	chr8	20503351	20503730	+	0	NA	Intergenic	MIR|SINE|MIR	111386	NR_145737	109616983		NR_145737		SNORD3F	RNU3P2|SNORD3P2|U3|U3.2	small nucleolar RNA, C/D box 3F	snoRNA
181594	chr5	43480151	43480700	+	0	NA	intron (NM_001377401, intron 1 of 3)	AluJr|SINE|Alu	3440	NM_001377401	64417		NM_022483	ENSG00000151881	TMEM267	C5orf28	transmembrane protein 267	protein-coding
24378	chr1	241676201	241676400	+	0	NA	intron (NM_001367482, intron 4 of 27)	MIRb|SINE|MIR	24019	NM_001367482	128025		NM_144625	ENSG00000162843	WDR64	-	WD repeat domain 64	protein-coding
219068	chr8	65817521	65817780	+	0	NA	intron (NM_001242318, intron 1 of 12)	L1MD3|LINE|L1	24414	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
182467	chr5	62335051	62335530	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	29084	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
73649	chr15	44706801	44707000	+	0	NA	Intergenic	L1MA3|LINE|L1	-4617	NM_004048	567		NM_004048	ENSG00000166710	B2M	IMD43	beta-2-microglobulin	protein-coding
91701	chr17	6445901	6446200	+	0	NA	intron (NM_019013, intron 2 of 5)	intron (NM_019013, intron 2 of 5)	1595	NM_001195228	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
209894	chr7	91942621	91943580	+	0	NA	intron (NM_147185, intron 1 of 49)	AluJr|SINE|Alu	2238	NM_005751	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
95709	chr17	38549401	38550080	+	0	NA	intron (NM_025248, intron 15 of 18)	intron (NM_025248, intron 15 of 18)	56212	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
26743	chr10	22695551	22696380	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	18143	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
132313	chr2	105327251	105327800	+	0	NA	intron (NM_001328646, intron 1 of 11)	AluJr|SINE|Alu	2131	NR_137328	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
47097	chr12	642421	643980	+	0	NA	intron (NM_001367996, intron 1 of 4)	CpG	436	NM_001294346	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
199141	chr6	111720401	111720830	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	38516	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
141464	chr2	241065621	241066080	+	0	NA	intron (NM_001080437, intron 21 of 31)	intron (NM_001080437, intron 21 of 31)	36437	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
151794	chr22	18188201	18188400	+	0	NA	intron (NR_136570, intron 7 of 11)	intron (NR_136570, intron 7 of 11)	17609	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
48005	chr12	6925301	6925500	+	0	NA	intron (NM_001007026, intron 1 of 9)	intron (NM_001007026, intron 1 of 9)	941	NM_001007026	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
122963	chr19	50782351	50782800	+	0	NA	Intergenic	Intergenic	3585	NM_001384597	105372440		NM_001384597	ENSG00000261341	SMIM47	-	small integral membrane protein 47	protein-coding
111714	chr19	4324901	4326200	+	0	NA	intron (NM_001013841, intron 9 of 12)	intron (NM_001013841, intron 9 of 12)	13277	NM_001013841	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
99326	chr17	49839551	49839850	+	0	NA	intron (NM_001077505, intron 2 of 2)	intron (NM_001077505, intron 2 of 2)	-6186	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
214209	chr7	148702771	148702930	+	0	NA	intron (NM_001370664, intron 1 of 21)	L2c|LINE|L2	3140	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
89542	chr16	89198151	89200080	+	0	NA	exon (NM_001366322, exon 4 of 9)	exon (NM_001366322, exon 4 of 9)	1422	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
142597	chr20	5576971	5577530	+	0	NA	intron (NM_019593, intron 8 of 19)	AluSg|SINE|Alu	33756	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
2651	chr1	10430001	10431500	+	0	NA	promoter-TSS (NR_037187)	promoter-TSS (NR_037187)	0	NR_037187	100526739		NM_198544	ENSG00000251503	CENPS-CORT	APITD1|APITD1-CORT|CENP-S|CENPS|FAAP16|MHF1	CENPS-CORT readthrough	protein-coding
44912	chr11	115256251	115257500	+	0	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	-76702	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
235622	chrX	48071151	48072080	+	0	NA	promoter-TSS (NM_001190255)	promoter-TSS (NM_001190255)	25	NM_001282201	57232		NM_001037735	ENSG00000221994	ZNF630	dJ54B20.2	zinc finger protein 630	protein-coding
132019	chr2	100653601	100654200	+	0	NA	Intergenic	Intergenic	50161	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
202017	chr6	152669971	152670130	+	0	NA	Intergenic	Intergenic	-27845	NM_025107	80177		NM_025107	ENSG00000120279	MYCT1	MTLC	MYC target 1	protein-coding
19666	chr1	180631321	180632880	+	0	NA	promoter-TSS (NM_004736)	promoter-TSS (NM_004736)	78	NR_137330	9213		NM_004736	ENSG00000143324	XPR1	IBGC6|SLC53A1|SYG1|X3	xenotropic and polytropic retrovirus receptor 1	protein-coding
118784	chr19	38397471	38397630	+	0	NA	non-coding (NR_073032, exon 6 of 6)	non-coding (NR_073032, exon 6 of 6)	-5585	NM_174905	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
189852	chr5	177118151	177118250	+	0	NA	Intergenic	MIRb|SINE|MIR	-14879	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
89054	chr16	88442651	88444150	+	0	NA	Intergenic	Intergenic	-9880	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
9182	chr1	45598101	45598800	+	0	NA	intron (NM_001195193, intron 2 of 12)	L2|LINE|L2	14409	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
201552	chr6	149232751	149233600	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	15249	NM_001292035	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
64102	chr14	22768151	22768630	+	0	NA	intron (NM_005015, intron 3 of 9)	intron (NM_005015, intron 3 of 9)	1702	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
144293	chr20	34706801	34707380	+	0	NA	intron (NM_001329429, intron 2 of 4)	intron (NM_001329429, intron 2 of 4)	2371	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
101261	chr17	66314801	66315000	+	0	NA	intron (NM_002737, intron 2 of 16)	(TG)n|Simple_repeat|Simple_repeat	12287	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
185735	chr5	132078171	132078530	+	0	NA	Intergenic	Intergenic	4561	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
219096	chr8	65878451	65878750	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-36536	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
53846	chr12	69595521	69595780	+	0	NA	intron (NM_006431, intron 10 of 15)	AluSx4|SINE|Alu	9761	NM_001198842	10576		NM_006431	ENSG00000166226	CCT2	99D8.1|CCT-beta|CCTB|HEL-S-100n|PRO1633|TCP-1-beta	chaperonin containing TCP1 subunit 2	protein-coding
152410	chr22	20562871	20564000	+	0	NA	intron (NM_001003891, intron 5 of 17)	L1MD1|LINE|L1	55388	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
112490	chr19	6427121	6427500	+	0	NA	intron (NM_173637, intron 5 of 6)	intron (NM_173637, intron 5 of 6)	-2499	NM_001366300	8570		NM_003685	ENSG00000088247	KHSRP	FBP2|FUBP2|KSRP|p75	KH-type splicing regulatory protein	protein-coding
110516	chr19	2068901	2069100	+	0	NA	Intergenic	AluSg|SINE|Alu	-17756	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
47129	chr12	723671	723830	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-28829	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
150596	chr21	43353571	43353930	+	0	NA	Intergenic	Intergenic	8599	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
16357	chr1	154334201	154334400	+	0	NA	intron (NM_001367934, intron 9 of 26)	intron (NM_001367934, intron 9 of 26)	5502	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
102214	chr17	75207371	75207600	+	0	NA	intron (NM_001303276, intron 1 of 17)	intron (NM_001303276, intron 1 of 17)	1806	NM_024844	79902		NM_024844	ENSG00000125450	NUP85	FROUNT|NPHS17|Nup75	nucleoporin 85	protein-coding
182838	chr5	69331321	69331880	+	0	NA	intron (NM_001297696, intron 1 of 10)	intron (NM_001297696, intron 1 of 10)	1193	NM_001297697	202243		NM_176816	ENSG00000183323	CCDC125	KENAE	coiled-coil domain containing 125	protein-coding
171915	chr4	848951	849250	+	0	NA	TTS (NM_005255)	TTS (NM_005255)	-22971	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
104589	chr17	81394871	81395530	+	0	NA	promoter-TSS (NM_001291324)	promoter-TSS (NM_001291324)	-257	NM_001377448	57597		NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
234587	chrX	19774651	19775650	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	24623	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
18293	chr1	161139451	161140330	+	0	NA	Intergenic	MIRb|SINE|MIR	4740	NR_156734	112543491		NR_156734		LOC112543491	-	linc-UFC1	ncRNA
162162	chr3	46978171	46978330	+	0	NA	intron (NM_144716, intron 1 of 7)	intron (NM_144716, intron 1 of 7)	-1416	NM_015175	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
43107	chr11	74990971	74991330	+	0	NA	TTS (NM_001367867)	TTS (NM_001367867)	2217	NM_001367866	10825		NM_006656	ENSG00000162139	NEU3	SIAL3	neuraminidase 3	protein-coding
110831	chr19	2492751	2493450	+	0	NA	Intergenic	Intergenic	16973	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
40012	chr11	62652801	62654330	+	0	NA	promoter-TSS (NM_030628)	promoter-TSS (NM_030628)	-263	NM_030628	80789		NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
111613	chr19	4110901	4111100	+	0	NA	intron (NM_030662, intron 2 of 10)	L1MB7|LINE|L1	13122	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
29322	chr10	69375301	69375900	+	0	NA	intron (NM_033498, intron 10 of 20)	intron (NM_033498, intron 10 of 20)	41318	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
151693	chr22	17220771	17221580	+	0	NA	intron (NM_001282227, intron 1 of 9)	intron (NM_001282227, intron 1 of 9)	673	NM_001282227	51816		NM_017424	ENSG00000093072	ADA2	ADGF|CECR1|IDGFL|PAN|SNEDS|VAIHS	adenosine deaminase 2	protein-coding
11585	chr1	91553971	91554400	+	0	NA	Intergenic	Intergenic	53077	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
174132	chr4	36225671	36226030	+	0	NA	intron (NR_146894, intron 2 of 32)	intron (NR_146894, intron 2 of 32)	18089	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
68799	chr14	91239021	91239680	+	0	NA	intron (NM_001348437, intron 1 of 2)	intron (NM_001348437, intron 1 of 2)	5354	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
115958	chr19	16875671	16876450	+	0	NA	exon (NM_015260, exon 16 of 20)	exon (NM_015260, exon 16 of 20)	12786	NM_001297597	23309		NM_015260	ENSG00000127511	SIN3B	-	SIN3 transcription regulator family member B	protein-coding
204166	chr7	2415171	2415530	+	0	NA	intron (NM_018641, intron 1 of 1)	AluSq2|SINE|Alu	11739	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
172854	chr4	3291351	3291450	+	0	NA	Intergenic	AluSx3|SINE|Alu	-22747	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
178985	chr4	163212371	163212530	+	0	NA	Intergenic	L1PA3|LINE|L1	-45560	NM_138386	92345		NM_138386	ENSG00000145414	NAF1	PFBMFT7	nuclear assembly factor 1 ribonucleoprotein	protein-coding
232283	chr9	134440501	134441080	+	0	NA	TTS (NM_002957)	TTS (NM_002957)	34230	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
180768	chr5	32162151	32162450	+	0	NA	intron (NM_022130, intron 1 of 3)	AluY|SINE|Alu	12019	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
104660	chr17	81483001	81483420	+	0	NA	Intergenic	Intergenic	29589	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
207119	chr7	42237721	42238030	+	0	NA	promoter-TSS (NM_000168)	promoter-TSS (NM_000168)	-666	NM_000168	2737		NM_000168	ENSG00000106571	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
6977	chr1	31791351	31791650	+	0	NA	intron (NM_144569, intron 15 of 15)	intron (NM_144569, intron 15 of 15)	24551	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
137117	chr2	191004001	191004200	+	0	NA	intron (NM_139266, intron 5 of 22)	intron (NM_139266, intron 5 of 22)	10071	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
6349	chr1	27730101	27730300	+	0	NA	intron (NM_001143914, intron 2 of 7)	AluSp|SINE|Alu	4239	NM_001143915	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
147542	chr20	59537221	59537480	+	0	NA	Intergenic	L1PA3|LINE|L1	-40159	NM_001199505	116154		NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
232912	chr9	136862601	136863250	+	0	NA	exon (NM_001281299, exon 4 of 5)	exon (NM_001281299, exon 4 of 5)	3383	NM_001281297	8721		NM_003792	ENSG00000107223	EDF1	CFAP280|EDF-1|MBF1	endothelial differentiation related factor 1	protein-coding
118683	chr19	37905601	37905800	+	0	NA	intron (NM_031951, intron 1 of 5)	AluJr|SINE|Alu	894	NM_001291088	83889		NM_031951	ENSG00000171804	WDR87	NYD-SP11	WD repeat domain 87	protein-coding
63917	chr14	21974651	21975150	+	0	NA	Intergenic	L1PA16|LINE|L1	-303883	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
112761	chr19	7408551	7409230	+	0	NA	intron (NM_015318, intron 1 of 20)	AluJo|SINE|Alu	13745	NM_015318	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
66173	chr14	60648071	60648700	+	0	NA	promoter-TSS (NR_162089)	promoter-TSS (NR_162089)	-263	NR_162089	113218481		NR_162089		MIR9718	-	microRNA 9718	ncRNA
213378	chr7	135952751	135952850	+	0	NA	intron (NM_001128619, intron 1 of 3)	AluJb|SINE|Alu	24559	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
115608	chr19	16068901	16069180	+	0	NA	intron (NM_001367836, intron 1 of 8)	intron (NM_001367836, intron 1 of 8)	1502	NM_001367836	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
142411	chr20	3887471	3887830	+	0	NA	Intergenic	Intergenic	-1131	NM_024960	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
42578	chr11	72001621	72002380	+	0	NA	TTS (NM_006185)	TTS (NM_006185)	2073	NM_001145055	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
64598	chr14	30270701	30270950	+	0	NA	Intergenic	Intergenic	-288298	NM_001308097	55632		NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
89445	chr16	88977171	88977730	+	0	NA	promoter-TSS (NM_005187)	promoter-TSS (NM_005187)	-243	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
93569	chr17	19093921	19094380	+	0	NA	intron (NR_164158, intron 3 of 3)	intron (NR_164158, intron 3 of 3)	4689	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
53916	chr12	71661221	71661800	+	0	NA	intron (NM_144982, intron 1 of 34)	AluSx1|SINE|Alu	2338	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
62181	chr13	97433901	97435360	+	0	NA	exon (NM_021033, exon 1 of 2)	exon (NM_021033, exon 1 of 2)	461	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
120112	chr19	42182921	42183380	+	0	NA	Intergenic	L2c|LINE|L2	34527	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
193809	chr6	31460101	31460300	+	0	NA	Intergenic	Intergenic	-2980	NR_040662	10866		NR_040662	ENSG00000206337	HCP5	6S2650E|D6S2650E|P5-1	HLA complex P5	ncRNA
4990	chr1	24320271	24320650	+	0	NA	intron (NM_001195010, intron 1 of 15)	intron (NM_001195010, intron 1 of 15)	1103	NM_001195010	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
7501	chr1	33346151	33346480	+	0	NA	intron (NM_198040, intron 9 of 14)	intron (NM_198040, intron 9 of 14)	3584	NM_004427	1912		NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2	protein-coding
144401	chr20	35273351	35273830	+	0	NA	intron (NM_001355008, intron 1 of 14)	intron (NM_001355008, intron 1 of 14)	4532	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
138787	chr2	216083771	216084000	+	0	NA	intron (NM_001142310, intron 2 of 3)	intron (NM_001142310, intron 2 of 3)	1966	NM_138390	92691		NM_138390	ENSG00000163449	TMEM169	-	transmembrane protein 169	protein-coding
208789	chr7	73587321	73588190	+	0	NA	Intergenic	Intergenic	-9176	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
234902	chrX	30995351	30995650	+	0	NA	Intergenic	Intergenic	76541	NM_031894	53940		NM_031894	ENSG00000132446	FTHL17	CT38	ferritin heavy chain like 17	protein-coding
110385	chr19	1924401	1924800	+	0	NA	3' UTR (NM_001329540, exon 6 of 6)	3' UTR (NM_001329540, exon 6 of 6)	-16572	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
44842	chr11	114082501	114083230	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	19654	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
98671	chr17	47844801	47845630	+	0	NA	3' UTR (NM_001258248, exon 2 of 2)	3' UTR (NM_001258248, exon 2 of 2)	-3942	NM_138355	90507		NM_138355	ENSG00000141295	SCRN2	Ses2	secernin 2	protein-coding
107365	chr18	45966571	45968100	+	0	NA	promoter-TSS (NM_020964)	promoter-TSS (NM_020964)	-6	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
62888	chr13	110714901	110716430	+	0	NA	exon (NM_005537, exon 1 of 2)	intron (NM_001267728, intron 1 of 1)	228	NM_001267728	3621		NM_005537	ENSG00000153487	ING1	p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a	inhibitor of growth family member 1	protein-coding
104204	chr17	80476241	80477600	+	0	NA	promoter-TSS (NM_002522)	promoter-TSS (NM_002522)	-313	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
66713	chr14	64387301	64388800	+	0	NA	promoter-TSS (NM_005956)	promoter-TSS (NM_005956)	-303	NM_001364837	4522		NM_005956	ENSG00000100714	MTHFD1	CIMAH|MTHFC|MTHFD	methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1	protein-coding
154400	chr22	35313101	35313950	+	0	NA	intron (NR_156428, intron 1 of 13)	intron (NR_156428, intron 1 of 13)	13631	NR_156428	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
173398	chr4	7983371	7983530	+	0	NA	intron (NM_001286688, intron 13 of 14)	intron (NM_001286688, intron 13 of 14)	21931	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
93738	chr17	19770551	19770850	+	0	NA	TTS (NM_001142610)	TTS (NM_001142610)	-22402	NM_001330150	218		NM_000691	ENSG00000108602	ALDH3A1	ALDH3|ALDHIII	aldehyde dehydrogenase 3 family member A1	protein-coding
55258	chr12	102121271	102121630	+	0	NA	intron (NM_001319994, intron 1 of 10)	MER58B|DNA|hAT-Charlie	1267	NM_001382723	55010		NM_017915	ENSG00000185480	PARPBP	AROM|C12orf48|PARI	PARP1 binding protein	protein-coding
619	chr1	1320401	1320600	+	0	NA	exon (NM_017871, exon 3 of 17)	exon (NM_017871, exon 3 of 17)	4160	NM_001256463	54973		NM_017871	ENSG00000127054	INTS11	CPSF3L|CPSF73L|INT11|NEDMLOB|PSF3L|RC-68|RC68	integrator complex subunit 11	protein-coding
112083	chr19	5339721	5340400	+	0	NA	intron (NM_130853, intron 1 of 28)	CpG	752	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
131717	chr2	97899571	97899730	+	0	NA	intron (NM_015348, intron 3 of 40)	L1MC4|LINE|L1	96298	NM_015348	23505		NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
16219	chr1	153920051	153920900	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	2497	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
201719	chr6	149747821	149748080	+	0	NA	Intergenic	Intergenic	-1421	NM_198887	348995		NM_024647	ENSG00000120253	NUP43	bA350J20.1|p42	nucleoporin 43	protein-coding
6911	chr1	31623471	31623930	+	0	NA	exon (NM_001525, exon 7 of 9)	exon (NM_001525, exon 7 of 9)	6011	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
234652	chrX	20130071	20130230	+	0	NA	intron (NM_001412, intron 6 of 6)	AluSx3|SINE|Alu	6263	NR_023358	100158262		NR_023358		SCARNA9L	-	small Cajal body-specific RNA 9 like	ncRNA
183225	chr5	76327971	76328130	+	0	NA	3' UTR (NM_014979, exon 13 of 13)	3' UTR (NM_014979, exon 13 of 13)	-75235	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
198441	chr6	106107321	106107780	+	0	NA	3' UTR (NM_001198, exon 7 of 7)	3' UTR (NM_001198, exon 7 of 7)	8609	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
11482	chr1	90719471	90720000	+	0	NA	Intergenic	CpG	-2433	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
196692	chr6	44871021	44871350	+	0	NA	intron (NM_001350327, intron 9 of 9)	L1PA2|LINE|L1	-319304	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
35453	chr11	1456871	1457730	+	0	NA	intron (NM_001256629, intron 19 of 19)	intron (NM_001256629, intron 19 of 19)	23586	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
160282	chr3	26403451	26403630	+	0	NA	Intergenic	L1HS|LINE|L1	-219266	NM_052953	116135		NM_052953	ENSG00000179796	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
114928	chr19	13964371	13964530	+	0	NA	intron (NM_002918, intron 16 of 20)	intron (NM_002918, intron 16 of 20)	-11058	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
201687	chr6	149548071	149548900	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-2442	NM_139126	85313		NM_139126	ENSG00000131013	PPIL4	HDCME13P	peptidylprolyl isomerase like 4	protein-coding
63847	chr14	21523601	21523800	+	0	NA	exon (NM_001364564, exon 2 of 2)	exon (NM_001364564, exon 2 of 2)	2646	NR_111967	6297		NM_005407	ENSG00000165821	SALL2	COLB|HSAL2|Sal-2|ZNF795|p150(Sal2)	spalt like transcription factor 2	protein-coding
131689	chr2	97731921	97732180	+	0	NA	intron (NM_001079, intron 4 of 13)	intron (NM_001079, intron 4 of 13)	-1250	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
103933	chr17	79834331	79834490	+	0	NA	exon (NM_003655, exon 5 of 5)	exon (NM_003655, exon 5 of 5)	5030	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
204007	chr7	1883471	1883630	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	-39297	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
134009	chr2	131009121	131009380	+	0	NA	intron (NM_001375902, intron 2 of 10)	L1MEf|LINE|L1	45595	NM_001375904	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
167050	chr3	126752271	126752500	+	0	NA	intron (NM_032343, intron 4 of 7)	intron (NM_032343, intron 4 of 7)	48145	NM_032343	84303		NM_032343	ENSG00000159685	CHCHD6	CHCM1|MICOS25|Mic25|PPP1R23	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding
26294	chr10	14957721	14957980	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1538	NR_147060	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
157194	chr22	43109751	43110180	+	0	NA	promoter-TSS (NM_001197)	promoter-TSS (NM_001197)	-785	NM_001197	638		NM_001197	ENSG00000100290	BIK	BIP1|BP4|NBK	BCL2 interacting killer	protein-coding
160913	chr3	35639371	35639730	+	0	NA	promoter-TSS (NM_001267616)	promoter-TSS (NM_001267616)	25	NM_001385517	10777		NM_016300	ENSG00000172995	ARPP21	ARPP-21|R3HDM3|RCS|TARPP	cAMP regulated phosphoprotein 21	protein-coding
117114	chr19	19204801	19205450	+	0	NA	Intergenic	L2b|LINE|L2	-1711	NM_001300945	126382		NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
229549	chr9	122911251	122911550	+	0	NA	exon (NM_006626, exon 2 of 2)	exon (NM_006626, exon 2 of 2)	1923	NM_006626	10773		NM_006626	ENSG00000186130	ZBTB6	ZID|ZNF482	zinc finger and BTB domain containing 6	protein-coding
29573	chr10	71697601	71697830	+	0	NA	intron (NM_001171931, intron 21 of 24)	intron (NM_001171931, intron 21 of 24)	22063	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
33399	chr10	118282751	118282930	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	59484	NM_001134672	63877		NM_022063	ENSG00000165669	FAM204A	C10orf84|bA319I23.1	family with sequence similarity 204 member A	protein-coding
143177	chr20	24160501	24160700	+	0	NA	Intergenic	Intergenic	-39167	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
139296	chr2	219518071	219519200	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	4153	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
131560	chr2	96789071	96789430	+	0	NA	intron (NM_020184, intron 1 of 6)	intron (NM_020184, intron 1 of 6)	-9028	NR_036074	100422928		NR_036074	ENSG00000264157	MIR3127	mir-3127	microRNA 3127	ncRNA
146119	chr20	48618821	48619380	+	0	NA	Intergenic	AluJo|SINE|Alu	208899	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
208617	chr7	72961051	72961350	+	0	NA	intron (NM_198924, intron 3 of 4)	intron (NM_198924, intron 3 of 4)	5753	NM_001317815	378108		NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
138619	chr2	209960901	209961230	+	0	NA	intron (NM_001371986, intron 51 of 64)	(TG)n|Simple_repeat|Simple_repeat	-41500	NM_006916	6120		NM_006916	ENSG00000197713	RPE	RPE2-1	ribulose-5-phosphate-3-epimerase	protein-coding
206542	chr7	35310371	35310600	+	0	NA	Intergenic	Intergenic	-3370	NR_038864	401324		NR_038864		LOC401324	-	uncharacterized LOC401324	ncRNA
214584	chr7	150631101	150631730	+	0	NA	intron (NM_024711, intron 1 of 2)	intron (NM_024711, intron 1 of 2)	970	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
70603	chr14	102788501	102788800	+	0	NA	intron (NM_001199427, intron 1 of 7)	AluSc|SINE|Alu	11171	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
166326	chr3	112807601	112808000	+	0	NA	intron (NR_149026, intron 2 of 4)	intron (NR_149026, intron 2 of 4)	5322	NR_149026	100129297		NR_149026		CD200R1L-AS1	-	CD200R1L antisense RNA 1	ncRNA
230163	chr9	127769601	127770190	+	0	NA	intron (NM_001252334, intron 1 of 11)	MIRb|SINE|MIR	1399	NM_005489	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
179076	chr4	167109801	167110000	+	0	NA	intron (NM_016950, intron 2 of 11)	L2|LINE|L2	124526	NM_001204353	50859		NM_016950	ENSG00000196104	SPOCK3	HSAJ1454|TES-3|TICN3	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	protein-coding
212219	chr7	120948521	120948780	+	0	NA	Intergenic	L1MEd|LINE|L1	-2127	NM_198267	54556		NM_019071	ENSG00000071243	ING3	Eaf4|ING2|MEAF4|p47ING3	inhibitor of growth family member 3	protein-coding
8478	chr1	40805471	40806600	+	0	NA	intron (NM_172163, intron 1 of 12)	AluY|SINE|Alu	22248	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
163495	chr3	51271201	51271550	+	0	NA	intron (NM_004947, intron 24 of 52)	MLT1A0|LTR|ERVL-MaLR	-113916	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
157929	chr22	49784001	49784200	+	0	NA	intron (NR_146335, intron 9 of 13)	CpG	40231	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
117636	chr19	23681051	23681830	+	0	NA	intron (NM_138330, intron 1 of 3)	intron (NM_138330, intron 1 of 3)	5772	NM_138330	171392		NM_138330	ENSG00000197372	ZNF675	TBZF|TIZ	zinc finger protein 675	protein-coding
189956	chr5	177424301	177424500	+	0	NA	Intergenic	L2c|LINE|L2	-2276	NM_001004106	2870		NM_002082	ENSG00000198055	GRK6	GPRK6	G protein-coupled receptor kinase 6	protein-coding
70069	chr14	100146521	100148380	+	0	NA	intron (NM_206918, intron 2 of 2)	intron (NM_206918, intron 2 of 2)	12195	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
217130	chr8	25323821	25324080	+	0	NA	exon (NM_024940, exon 17 of 52)	exon (NM_024940, exon 17 of 52)	-21452	NR_106936	102465527		NR_106936	ENSG00000274988	MIR6876	hsa-mir-6876	microRNA 6876	ncRNA
486	chr1	1168771	1169300	+	0	NA	promoter-TSS (NR_029957)	promoter-TSS (NR_029957)	30	NR_029957	554210		NR_029957	ENSG00000198976	MIR429	MIRN429|hsa-mir-429|mir-429	microRNA 429	ncRNA
134303	chr2	135975671	135975830	+	0	NA	intron (NM_001293312, intron 2 of 14)	AluSx|SINE|Alu	-9426	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
49983	chr12	42140571	42140980	+	0	NA	intron (NM_173601, intron 1 of 7)	intron (NM_173601, intron 1 of 7)	4099	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
54080	chr12	76048421	76048680	+	0	NA	TTS (NM_001307924)	TTS (NM_001307924)	-16774	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
10767	chr1	77279971	77280450	+	0	NA	Intergenic	Intergenic	-1809	NM_174858	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
126620	chr2	28800221	28800480	+	0	NA	3' UTR (NM_002709, exon 8 of 8)	3' UTR (NM_002709, exon 8 of 8)	-10484	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
23947	chr1	235124121	235124730	+	0	NA	intron (NM_014765, intron 1 of 4)	MIR|SINE|MIR	3512	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
200803	chr6	137900171	137900750	+	0	NA	Intergenic	L1MA4|LINE|L1	-32227	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
125241	chr2	10397501	10398030	+	0	NA	intron (NM_001258358, intron 2 of 4)	intron (NM_001258358, intron 2 of 4)	29001	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
189606	chr5	175872971	175873330	+	0	NA	intron (NM_001008220, intron 1 of 3)	intron (NM_001008220, intron 1 of 3)	1572	NM_001008220	10814		NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding
139268	chr2	219458051	219458680	+	0	NA	intron (NM_005876, intron 6 of 40)	MER5A|DNA|hAT-Charlie	-2447	NM_001173476	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
226126	chr9	63117601	63117800	+	0	NA	intron (NR_046175, intron 3 of 3)	intron (NR_046175, intron 3 of 3)	7519	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
46610	chr11	128575351	128575650	+	0	NA	intron (NM_001143820, intron 1 of 9)	L2b|LINE|L2	12058	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
38473	chr11	45807651	45808580	+	0	NA	intron (NM_018389, intron 1 of 1)	intron (NM_018389, intron 1 of 1)	2966	NM_018389	55343		NM_018389	ENSG00000181830	SLC35C1	CDG2C|FUCT1	solute carrier family 35 member C1	protein-coding
86772	chr16	67703151	67703900	+	0	NA	intron (NM_001243650, intron 1 of 1)	intron (NM_001243650, intron 1 of 1)	15791	NR_027398	81577		NM_030819	ENSG00000141098	GFOD2	-	Gfo/Idh/MocA-like oxidoreductase domain containing 2	protein-coding
168857	chr3	152281321	152282030	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-12049	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
38325	chr11	44226971	44227130	+	0	NA	intron (NM_000401, intron 10 of 13)	intron (NM_000401, intron 10 of 13)	83089	NM_021926	60529		NM_021926	ENSG00000052850	ALX4	CRS5|FND2	ALX homeobox 4	protein-coding
133980	chr2	130796071	130796650	+	0	NA	Intergenic	Intergenic	40016	NM_001105195	205147		NM_152698	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
106088	chr18	9139501	9140000	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	2187	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
72132	chr15	28987571	28987730	+	0	NA	intron (NM_001353793, intron 1 of 12).2	MLT1F1|LTR|ERVL-MaLR	-7877	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
52369	chr12	55667001	55667680	+	0	NA	Intergenic	MER66B|LTR|ERV1	-14396	NM_152637	196410		NM_152637	ENSG00000170439	TMT1B	ALDI|METTL7B	thiol methyltransferase 1B	protein-coding
71536	chr14	106210701	106211450	+	0	NA	Intergenic	Intergenic	-76599	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
210215	chr7	99218421	99218880	+	0	NA	Intergenic	Intergenic	-10535	NM_001145715	402569		NM_001145715	ENSG00000185467	KPNA7	IPOA8|OZEMA17	karyopherin subunit alpha 7	protein-coding
41837	chr11	67103701	67104580	+	0	NA	Intergenic	Intergenic	14208	NR_160735	107984341		NR_160735		LOC107984341	-	uncharacterized LOC107984341	ncRNA
190032	chr5	177508051	177508700	+	0	NA	exon (NM_001375794, exon 3 of 6)	exon (NM_001375794, exon 3 of 6)	1451	NM_001384137	79930		NM_024872	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
41014	chr11	65429201	65429500	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	6552	NR_131012	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
6654	chr1	29025971	29026130	+	0	NA	intron (NM_001376013, intron 7 of 20)	intron (NM_001376013, intron 7 of 20)	96451	NM_001171868	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
203332	chr6	170220621	170221100	+	0	NA	Intergenic	CpG	41709	NR_002787	154449		NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
232531	chr9	136334271	136334630	+	0	NA	exon (NM_001145638, exon 2 of 14)	exon (NM_001145638, exon 2 of 14)	6911	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
95651	chr17	38058921	38059180	+	0	NA	intron (NM_001369499, intron 12 of 12).5	intron (NM_001369499, intron 12 of 12).5	9544	NM_001291465	101060389		NM_001123390	ENSG00000274419	TBC1D3D	PRC17|TBC1D3|TBC1D3A|TBC1D3H	TBC1 domain family member 3D	protein-coding
22988	chr1	226100321	226101530	+	0	NA	Intergenic	Intergenic	17350	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
91659	chr17	5514851	5515480	+	0	NA	intron (NM_014922, intron 15 of 15)	intron (NM_014922, intron 15 of 15)	-14159	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
229988	chr9	126830751	126831050	+	0	NA	intron (NM_014007, intron 2 of 2)	intron (NM_014007, intron 2 of 2)	25860	NM_014007	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
119899	chr19	41557271	41557900	+	0	NA	intron (NM_001288773, intron 1 of 7)	intron (NM_001288773, intron 1 of 7)	8067	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
159819	chr3	16377001	16378150	+	0	NA	intron (NM_015150, intron 5 of 9)	intron (NM_015150, intron 5 of 9)	112363	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
98520	chr17	47560601	47561030	+	0	NA	intron (NM_006310, intron 2 of 22)	intron (NM_006310, intron 2 of 22)	29707	NM_006310	9520		NM_006310	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
74969	chr15	63831901	63832300	+	0	NA	intron (NM_003922, intron 1 of 77)	L3b|LINE|CR1	1848	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
232816	chr9	136721121	136721380	+	0	NA	intron (NM_152421, intron 2 of 4)	MER54B|LTR|ERVL	4987	NR_002975	677824		NR_002975	ENSG00000280496	SNORA17B	ACA43|SNORA43	small nucleolar RNA, H/ACA box 17B	snoRNA
223260	chr8	143706821	143707080	+	0	NA	exon (NM_001162914, exon 2 of 2)	exon (NM_001162914, exon 2 of 2)	-1101	NR_134306	101928160		NR_134306	ENSG00000181135	LOC101928160	-	uncharacterized LOC101928160	ncRNA
58278	chr12	129967451	129967550	+	0	NA	Intergenic	Intergenic	-63475	NM_133448	121256		NM_133448	ENSG00000151952	TMEM132D	MOLT|PPP1R153	transmembrane protein 132D	protein-coding
218	chr1	825271	826100	+	0	NA	TTS (NR_024321)	TTS (NR_024321)	1837	NR_024321	79854		NM_024796		LINC00115	NCRNA00115	long intergenic non-protein coding RNA 115	ncRNA
50980	chr12	49559851	49560380	+	0	NA	intron (NM_006337, intron 9 of 14)	intron (NM_006337, intron 9 of 14)	6324	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
191850	chr6	15251201	15252100	+	0	NA	intron (NM_001267040, intron 1 of 17)	Tigger13a|DNA|TcMar-Tigger	2795	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
22239	chr1	212610451	212610550	+	0	NA	intron (NM_001206488, intron 1 of 3)	intron (NM_001206488, intron 1 of 3)	1739	NM_001206484	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
112389	chr19	6086621	6087400	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	23490	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
105416	chr17	82848971	82849150	+	0	NA	intron (NM_005993, intron 13 of 38)	CpG	-9038	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
85180	chr16	46832901	46833300	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-1920	NR_145834	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
7068	chr1	32013121	32014500	+	0	NA	promoter-TSS (NM_001271878)	promoter-TSS (NM_001271878)	-58	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
36854	chr11	10322571	10323330	+	0	NA	intron (NR_103765, intron 1 of 3)	intron (NR_103765, intron 1 of 3)	14637	NR_103765	100130460		NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
18744	chr1	167484871	167485400	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	33394	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
28637	chr10	59708871	59709050	+	0	NA	intron (NM_001323978, intron 1 of 6)	CpG	931	NM_001323979	220963		NM_194298	ENSG00000165449	SLC16A9	C10orf36|MCT9	solute carrier family 16 member 9	protein-coding
197354	chr6	73453901	73454200	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1753	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
84703	chr16	30808271	30809030	+	0	NA	Intergenic	AluSq|SINE|Alu	-21445	NM_001345970	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
173366	chr4	7863251	7865040	+	0	NA	intron (NM_001371091, intron 4 of 17)	intron (NM_001371091, intron 4 of 17)	8163	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
129524	chr2	69690551	69690930	+	0	NA	intron (NM_001320698, intron 2 of 14)	intron (NM_001320698, intron 2 of 14)	46932	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
37007	chr11	11998271	11998880	+	0	NA	intron (NM_001018057, intron 3 of 6)	intron (NM_001018057, intron 3 of 6)	10064	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
58758	chr12	132644901	132645100	+	0	NA	intron (NM_006231, intron 32 of 48)	intron (NM_006231, intron 32 of 48)	26224	NM_170682	22953		NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	purinergic receptor P2X 2	protein-coding
100233	chr17	59332301	59333230	+	0	NA	intron (NM_001005404, intron 1 of 4)	CpG	1110	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
61490	chr13	52514001	52514280	+	0	NA	intron (NR_002793, intron 8 of 23)	Tigger1|DNA|TcMar-Tigger	25147	NR_002793	220115		NR_002793		TPTE2P3	TPTEps1	TPTE2 pseudogene 3	pseudo
163982	chr3	53074351	53074450	+	0	NA	Intergenic	Intergenic	-28327	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
171901	chr4	822521	822780	+	0	NA	intron (NM_006651, intron 2 of 3)	intron (NM_006651, intron 2 of 3)	3479	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
218565	chr8	54467071	54467230	+	0	NA	Intergenic	CpG	9215	NM_022454	64321		NM_022454	ENSG00000164736	SOX17	VUR3	SRY-box transcription factor 17	protein-coding
179049	chr4	165293901	165294100	+	0	NA	intron (NM_001161522, intron 4 of 13)	intron (NM_001161522, intron 4 of 13)	-13977	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
33029	chr10	110783071	110784030	+	0	NA	intron (NM_001134363, intron 3 of 13)	L2a|LINE|L2	87354	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
184388	chr5	98867751	98868080	+	0	NA	intron (NR_157078, intron 32 of 36)	AluSq2|SINE|Alu	-60647	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
115481	chr19	15367871	15368230	+	0	NA	intron (NM_005858, intron 9 of 13)	intron (NM_005858, intron 9 of 13)	11737	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
154622	chr22	36311671	36312180	+	0	NA	intron (NM_002473, intron 14 of 40)	intron (NM_002473, intron 14 of 40)	-25018	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
19681	chr1	181013771	181013930	+	0	NA	intron (NM_005819, intron 1 of 7)	MLT1G3|LTR|ERVL-MaLR	9020	NM_005819	10228		NM_005819	ENSG00000135823	STX6	-	syntaxin 6	protein-coding
196918	chr6	52388871	52390000	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	27284	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
237731	chrX	127056351	127056450	+	0	NA	Intergenic	L1PA6|LINE|L1	236671	NM_001122716	100130613		NM_001122716	ENSG00000183631	PRR32	CXorf64	proline rich 32	protein-coding
163213	chr3	50244471	50244950	+	0	NA	intron (NM_001282618, intron 1 of 7)	intron (NM_001282618, intron 1 of 7)	-2200	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
229576	chr9	123338101	123338300	+	0	NA	Intergenic	MIR|SINE|MIR	-17997	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
40343	chr11	63940371	63940530	+	0	NA	intron (NM_001300800, intron 1 of 7)	MIRb|SINE|MIR	1119	NM_001300800	79829		NM_024771	ENSG00000110583	NAA40	NAT11|NatD|PATT1|hNatD	N-alpha-acetyltransferase 40, NatD catalytic subunit	protein-coding
61465	chr13	52196601	52197130	+	0	NA	Intergenic	MIR|SINE|MIR	-2398	NR_002816	100887750		NR_002816	ENSG00000291010	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
1261	chr1	2304001	2304230	+	0	NA	intron (NM_003036, intron 4 of 6)	CpG	48546	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
179192	chr4	173328251	173328550	+	0	NA	Intergenic	L1ME4b|LINE|L1	5369	NM_001130689	3148		NM_002129	ENSG00000164104	HMGB2	HMG2	high mobility group box 2	protein-coding
220648	chr8	101082571	101082730	+	0	NA	Intergenic	HAL1|LINE|L1	30596	NR_033962	441374		NR_033962	ENSG00000248599	SLEAR	-	STAT1 regulated ILF2 complex interacting lncRNA	ncRNA
171651	chr3	197654101	197656200	+	0	NA	Intergenic	AluJb|SINE|Alu	19426	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
46041	chr11	122688171	122688600	+	0	NA	intron (NM_032873, intron 1 of 13)	AluSc8|SINE|Alu	32663	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
142405	chr20	3854001	3854200	+	0	NA	intron (NM_001385663, intron 1 of 7)	intron (NM_001385663, intron 1 of 7)	7266	NM_020746	57506		NM_020746	ENSG00000088888	MAVS	CARDIF|IPS-1|IPS1|VISA	mitochondrial antiviral signaling protein	protein-coding
9733	chr1	53198451	53198980	+	0	NA	intron (NM_000098, intron 1 of 4)	MIR3|SINE|MIR	1891	NM_000098	1376		NM_000098	ENSG00000157184	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
121755	chr19	47754301	47754900	+	0	NA	exon (NM_015710, exon 7 of 13)	exon (NM_015710, exon 7 of 13)	-1253	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
149233	chr21	25569201	25570180	+	0	NA	intron (NR_001458, intron 1 of 2)	intron (NR_001458, intron 1 of 2)	-4290	NR_030784	406947		NR_030784	ENSG00000283904	MIR155	MIRN155|miRNA155|mir-155	microRNA 155	ncRNA
93820	chr17	20737621	20737880	+	0	NA	non-coding (NR_073509, exon 12 of 12)	non-coding (NR_073509, exon 12 of 12)	25304	NR_073509	100287072		NR_073509		LOC100287072	-	ribosomal protein S6 kinase B1 pseudogene	pseudo
148923	chr21	9130771	9131300	+	0	NA	Intergenic	MER66A|LTR|ERV1	-1274	NR_038329	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
214036	chr7	143309321	143309930	+	0	NA	intron (NM_001363538, intron 8 of 11)	AluSq2|SINE|Alu	-6486	NR_046453	1180		NM_000083	ENSG00000188037	CLCN1	CLC1	chloride voltage-gated channel 1	protein-coding
52167	chr12	54292521	54293230	+	0	NA	exon (NM_001136023, exon 3 of 3)	exon (NM_001136023, exon 3 of 3)	2904	NM_006163	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
224356	chr9	7121901	7122100	+	0	NA	intron (NR_148677, intron 18 of 21)	intron (NR_148677, intron 18 of 21)	364027	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
20407	chr1	198187851	198188750	+	0	NA	intron (NM_133494, intron 1 of 9)	LTR40b|LTR|ERVL	31302	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
104810	chr17	81803251	81803350	+	0	NA	promoter-TSS (NM_000160)	promoter-TSS (NM_000160)	-850	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
123183	chr19	52369521	52370360	+	0	NA	promoter-TSS (NM_001145434)	promoter-TSS (NM_001145434)	17	NM_001145434	400713		NM_001145434	ENSG00000221923	ZNF880	-	zinc finger protein 880	protein-coding
218472	chr8	50350571	50350730	+	0	NA	intron (NM_001321778, intron 2 of 16)	LTR12C|LTR|ERV1	186519	NM_001321778	54212		NM_018967	ENSG00000147481	SNTG1	G1SYN|SYN4	syntrophin gamma 1	protein-coding
86434	chr16	66893321	66893780	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	13035	NM_020786	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
125823	chr2	24343121	24343650	+	0	NA	intron (NM_147152, intron 1 of 29)	intron (NM_147152, intron 1 of 29)	17151	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
168351	chr3	141884921	141885180	+	0	NA	intron (NM_001679, intron 1 of 6)	intron (NM_001679, intron 1 of 6)	8407	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
173730	chr4	15971051	15971750	+	0	NA	intron (NM_001371408, intron 23 of 24)	intron (NM_001371408, intron 23 of 24)	-8225	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
238098	chrX	136587651	136588850	+	0	NA	Intergenic	Intergenic	37372	NR_030631	100126324		NR_030631	ENSG00000216060	MIR934	MIRN934|hsa-mir-934|mir-934	microRNA 934	ncRNA
45338	chr11	118223671	118224300	+	0	NA	intron (NM_001098526, intron 1 of 9)	intron (NM_001098526, intron 1 of 9)	1026	NM_001098526	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
230310	chr9	127959271	127959730	+	0	NA	intron (NM_001035254, intron 1 of 10)	THE1D|LTR|ERVL-MaLR	-8786	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
182194	chr5	56820351	56820650	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	4951	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
59340	chr13	24580371	24581030	+	0	NA	non-coding (NR_002815, exon 1 of 9)	non-coding (NR_002815, exon 1 of 9)	492	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
86252	chr16	58336701	58337050	+	0	NA	Intergenic	Intergenic	-41828	NM_001080492	221191		NM_001080492	ENSG00000103023	PRSS54	CT67|KLKBL4	serine protease 54	protein-coding
111863	chr19	4635971	4636830	+	0	NA	Intergenic	CpG	-3116	NM_152362	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
126174	chr2	26477301	26477800	+	0	NA	intron (NM_194248, intron 19 of 46)	intron (NM_194248, intron 19 of 46)	574	NM_004802	9381		NM_004802	ENSG00000115155	OTOF	AUNB1|DFNB6|DFNB9|FER1L2|NSRD9	otoferlin	protein-coding
180925	chr5	34498821	34499330	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-157253	NM_001145522	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
155587	chr22	38753821	38754450	+	0	NA	intron (NM_001199579, intron 1 of 17)	intron (NM_001199579, intron 1 of 17)	1331	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
195175	chr6	35931951	35932450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11020	NR_034069	6732		NM_003137	ENSG00000096063	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
141222	chr2	239398401	239398800	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	2420	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
14310	chr1	143831701	143832350	+	0	NA	Intergenic	Intergenic	38425	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
17846	chr1	159918121	159918750	+	0	NA	3' UTR (NM_003564, exon 5 of 5)	3' UTR (NM_003564, exon 5 of 5)	5299	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
174250	chr4	37981851	37982250	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	21652	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
107607	chr18	48920451	48920980	+	0	NA	3' UTR (NM_001190823, exon 2 of 2)	3' UTR (NM_001190823, exon 2 of 2)	22092	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
237609	chrX	123976451	123977100	+	0	NA	intron (NM_001282418, intron 2 of 33)	MIRb|SINE|MIR	15069	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
204834	chr7	5731351	5731780	+	0	NA	intron (NM_207111, intron 5 of 16)	intron (NM_207111, intron 5 of 16)	-19655	NR_106934	102466203		NR_106934	ENSG00000283419	MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
80141	chr16	2085771	2086680	+	0	NA	exon (NM_021055, exon 36 of 41)	exon (NM_021055, exon 36 of 41)	4059	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
155806	chr22	39308201	39309480	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	5071	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
153145	chr22	23767561	23768630	+	0	NA	promoter-TSS (NM_001301339)	promoter-TSS (NM_001301339)	-123	NM_213720	400916		NM_213720	ENSG00000250479	CHCHD10	C22orf16|FTDALS2|IMMD|MIX17A|N27C7-4|SMAJ	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding
168678	chr3	150585921	150586180	+	0	NA	TTS (NM_032025)	TTS (NM_032025)	-17271	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
161475	chr3	42347871	42348230	+	0	NA	Intergenic	Intergenic	62560	NM_144634	131375		NM_144634	ENSG00000157093	LYZL4	LYC4|LYZA	lysozyme like 4	protein-coding
164156	chr3	56771351	56771530	+	0	NA	intron (NM_001289698, intron 3 of 10)	intron (NM_001289698, intron 3 of 10)	4277	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
98869	chr17	48514071	48514230	+	0	NA	Intergenic	Intergenic	16861	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
126402	chr2	27637921	27639300	+	0	NA	intron (NR_026735, intron 6 of 11)	intron (NR_026735, intron 6 of 11)	9560	NM_007266	11321		NM_007266	ENSG00000198522	GPN1	ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1	GPN-loop GTPase 1	protein-coding
141197	chr2	239321401	239323130	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	16803	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
186231	chr5	134398251	134398550	+	0	NA	Intergenic	AluJr|SINE|Alu	13481	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
220960	chr8	109644151	109645600	+	0	NA	promoter-TSS (NM_001099753)	promoter-TSS (NM_001099753)	-53	NM_001099755	55638		NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding
156061	chr22	39990601	39990800	+	0	NA	Intergenic	Intergenic	-4254	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
185787	chr5	132413451	132414330	+	0	NA	intron (NR_161242, intron 1 of 3)	L1MEd|LINE|L1	2961	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
237959	chrX	133382451	133382550	+	0	NA	intron (NM_001448, intron 1 of 8)	AluY|SINE|Alu	32989	NM_001448	2239		NM_001448	ENSG00000076716	GPC4	K-glypican|KPTS	glypican 4	protein-coding
107957	chr18	58309321	58309870	+	0	NA	intron (NM_001243960, intron 5 of 28)	intron (NM_001243960, intron 5 of 28)	88024	NM_001144966	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
146060	chr20	47473271	47473830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-28337	NM_181659	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
60564	chr13	41500401	41501300	+	0	NA	Intergenic	L2b|LINE|L2	43300	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
130001	chr2	74119701	74120670	+	0	NA	Intergenic	CpG	27727	NM_001035505	388962		NM_212552	ENSG00000163170	BOLA3	MMDS2	bolA family member 3	protein-coding
167444	chr3	129084301	129084930	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	23836	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
33197	chr10	113689021	113689500	+	0	NA	intron (NM_001227, intron 1 of 6)	L1PBb|LINE|L1	9348	NM_033339	840		NM_001227	ENSG00000165806	CASP7	CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3	caspase 7	protein-coding
51949	chr12	53746401	53747680	+	0	NA	Intergenic	Intergenic	4795	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
55941	chr12	109966201	109966600	+	0	NA	intron (NM_139201, intron 8 of 14)	AluSx3|SINE|Alu	29968	NM_014776	9815		NM_014776	ENSG00000139436	GIT2	CAT-2|CAT2|PKL	GIT ArfGAP 2	protein-coding
80848	chr16	3502101	3502300	+	0	NA	intron (NM_015041, intron 1 of 11)	AluSz|SINE|Alu	1196	NM_015041	23059		NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
238066	chrX	135984951	135986550	+	0	NA	exon (NM_006359, exon 1 of 16)	exon (NM_006359, exon 1 of 16)	315	NM_006359	10479		NM_006359	ENSG00000198689	SLC9A6	MRSA|MRXSCH|NHE6	solute carrier family 9 member A6	protein-coding
182929	chr5	70775751	70776050	+	0	NA	non-coding (NR_157804, exon 1 of 1).2	non-coding (NR_157804, exon 1 of 1).2	736	NR_160659	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
109409	chr19	679571	681470	+	0	NA	intron (NM_005860, intron 3 of 4)	CpG-12911	4128	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
218104	chr8	40872301	40872500	+	0	NA	intron (NM_001135731, intron 1 of 5)	intron (NM_001135731, intron 1 of 5)	25426	NM_001135731	79698		NM_024645	ENSG00000165061	ZMAT4	-	zinc finger matrin-type 4	protein-coding
228151	chr9	96922601	96922900	+	0	NA	Intergenic	AluY|SINE|Alu	-6093	NM_001170741	441457		NM_001024597	ENSG00000188152	NUTM2G	FAM22G|NUTMG	NUT family member 2G	protein-coding
130334	chr2	84991701	84992100	+	0	NA	intron (NM_020122, intron 1 of 6)	MIR3|SINE|MIR	20739	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
202152	chr6	155181601	155181800	+	0	NA	intron (NM_001384547, intron 11 of 25)	L1MB2|LINE|L1	-35266	NM_001010927	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
239407	chrY	24521751	24521850	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	36468	NR_001526	252949		NR_001526	ENSG00000228240	TTTY17A	NCRNA00140|TTTY17	testis expressed transcript, Y-linked 17A	ncRNA
34541	chr10	132961701	132962850	+	0	NA	promoter-TSS (NR_125763)	promoter-TSS (NR_125763)	-38	NR_125763	103695432		NR_125763	ENSG00000224758	LINC01167	TCONS_00018075	long intergenic non-protein coding RNA 1167	ncRNA
84226	chr16	29972301	29972700	+	0	NA	intron (NR_161465, intron 6 of 6)	intron (NR_161465, intron 6 of 6)	-1368	NM_004783	9344		NM_004783	ENSG00000149930	TAOK2	MAP3K17|PSK|PSK1|PSK1-BETA|TAO1|TAO2|Tao2beta	TAO kinase 2	protein-coding
15244	chr1	149607441	149609030	+	0	NA	intron (NR_111950, intron 1 of 8)	CpG	1223	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
178937	chr4	158927151	158927250	+	0	NA	intron (NM_152543, intron 3 of 4)	L1MB7|LINE|L1	108029	NM_152543	152940		NM_152543	ENSG00000164123	SPMIP2	C4orf45	sperm microtubule inner protein 2	protein-coding
191782	chr6	14130951	14131800	+	0	NA	intron (NM_001040280, intron 2 of 4)	intron (NM_001040280, intron 2 of 4)	13603	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
136799	chr2	181606351	181606490	+	0	NA	intron (NR_027690, intron 1 of 11)	GA-rich|Low_complexity|Low_complexity	50685	NM_201548	375298		NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding
171378	chr3	196115801	196116230	+	0	NA	Intergenic	Intergenic	-26621	NR_034088	401109		NM_001001699	ENSG00000224652	LINC00885	-	long intergenic non-protein coding RNA 885	ncRNA
31576	chr10	97333351	97335680	+	0	NA	exon (NM_012083, exon 1 of 1)	exon (NM_012083, exon 1 of 1)	214	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
206797	chr7	36795351	36795850	+	0	NA	Intergenic	Intergenic	-71051	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
179227	chr4	173538521	173539050	+	0	NA	non-coding (NR_136197, exon 4 of 4)	non-coding (NR_136197, exon 4 of 4)	8327	NR_003679	79804		NR_003679	ENSG00000237125	HAND2-AS1	DEIN|NBLA00301|UPH	HAND2 antisense RNA 1	ncRNA
68547	chr14	89349401	89349630	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	67718	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
32172	chr10	101568001	101568650	+	0	NA	Intergenic	L2b|LINE|L2	19932	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
179343	chr4	183093621	183094080	+	0	NA	Intergenic	Intergenic	5349	NR_024008	152641		NM_153008	ENSG00000251359	WWC2-AS2	C4orf38	WWC2 antisense RNA 2	ncRNA
78433	chr15	92803601	92804600	+	0	NA	Intergenic	Intergenic	8616	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
209138	chr7	75094401	75095880	+	0	NA	intron (NM_001368302, intron 1 of 15)	Tigger7|DNA|TcMar-Tigger	1108	NM_001368302	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
210493	chr7	100169141	100170150	+	0	NA	TTS (NM_152742)	TTS (NM_152742)	-1028	NM_024637	79690		NM_024637	ENSG00000197093	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
38060	chr11	35178871	35179530	+	0	NA	intron (NM_001001392, intron 2 of 3)	intron (NM_001001392, intron 2 of 3)	16250	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
161562	chr3	42755701	42755930	+	0	NA	intron (NM_144719, intron 3 of 15)	intron (NM_144719, intron 3 of 15)	-14797	NR_122070	729083		NR_122070	ENSG00000225611	CCDC13-AS2	LINC02158	CCDC13 antisense RNA 2	ncRNA
185619	chr5	131473771	131473930	+	0	NA	intron (NM_016340, intron 16 of 27)	intron (NM_016340, intron 16 of 27)	161379	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
55778	chr12	108612101	108612700	+	0	NA	Intergenic	Intergenic	-14316	NM_181724	338773		NM_181724	ENSG00000183160	TMEM119	OBIF	transmembrane protein 119	protein-coding
234535	chrX	19667221	19667480	+	0	NA	intron (NM_001353892, intron 7 of 17)	AluJr|SINE|Alu	3649	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
198712	chr6	108165301	108165500	+	0	NA	promoter-TSS (NM_003269)	promoter-TSS (NM_003269)	-622	NM_003269	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
85833	chr16	57003211	57004100	+	0	NA	intron (NR_169520, intron 1 of 47)	LTR16A1|LTR|ERVL	14098	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
213915	chr7	142528921	142529450	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	54658	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
137052	chr2	190886821	190887630	+	0	NA	intron (NM_014905, intron 1 of 17)	intron (NM_014905, intron 1 of 17)	6404	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
82499	chr16	17393051	17393380	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	77745	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
130280	chr2	84878321	84878980	+	0	NA	intron (NM_001307978, intron 1 of 4)	intron (NM_001307978, intron 1 of 4)	2434	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
140409	chr2	233098521	233099000	+	0	NA	intron (NM_001017915, intron 2 of 26).2	L3|LINE|CR1	38418	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
38095	chr11	35209871	35210230	+	0	NA	exon (NM_000610, exon 13 of 18)	exon (NM_000610, exon 13 of 18)	47100	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
2663	chr1	10496061	10496580	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	21370	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
145356	chr20	41148771	41148930	+	0	NA	intron (NM_182811, intron 1 of 31)	MIRb|SINE|MIR	-10850	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
50482	chr12	47780751	47780850	+	0	NA	3' UTR (NM_017842, exon 3 of 3)	3' UTR (NM_017842, exon 3 of 3)	7562	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
190784	chr6	617351	617850	+	0	NA	intron (NM_018303, intron 6 of 27)	intron (NM_018303, intron 6 of 27)	39364	NM_148959	135458		NM_148959	ENSG00000188996	HUS1B	-	HUS1 checkpoint clamp component B	protein-coding
66504	chr14	61707251	61707550	+	0	NA	intron (NM_001243084, intron 1 of 14)	L1PA4|LINE|L1	9778	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
17427	chr1	156659721	156660950	+	0	NA	TTS (NM_021948)	TTS (NM_021948)	17072	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
201980	chr6	152278721	152278980	+	0	NA	intron (NM_033071, intron 96 of 145)	AluJo|SINE|Alu	-93472	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
160564	chr3	30690401	30690600	+	0	NA	intron (NM_001024847, intron 7 of 7)	intron (NM_001024847, intron 7 of 7)	83899	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
4547	chr1	22028271	22028630	+	0	NA	intron (NR_109762, intron 2 of 2)	intron (NR_109762, intron 2 of 2)	-2402	NR_110692	101928043		NR_110692	ENSG00000228397	LINC01635	-	long intergenic non-protein coding RNA 1635	ncRNA
186423	chr5	135830171	135830330	+	0	NA	intron (NM_001349345, intron 4 of 9)	intron (NM_001349345, intron 4 of 9)	-4413	NR_146141	153328		NM_145282	ENSG00000145832	SLC25A48	-	solute carrier family 25 member 48	protein-coding
13409	chr1	113974871	113975030	+	0	NA	3' UTR (NM_001369807, exon 16 of 16)	3' UTR (NM_001369807, exon 16 of 16)	-4441	NM_001286353	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
81854	chr16	11620621	11621000	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	-33344	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
9902	chr1	54379521	54379780	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	26744	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
204050	chr7	1949651	1949750	+	0	NA	intron (NM_001304524, intron 14 of 16)	intron (NM_001304524, intron 14 of 16)	-9129	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
124504	chr19	58582851	58583800	+	0	NA	non-coding (NR_026052, exon 2 of 2)	non-coding (NR_026052, exon 2 of 2)	7926	NR_026052	65996		NM_023939	ENSG00000293115	CENPBD2P	CENPBD1P1	CENPB DNA-binding domains containing 2, pseudogene	pseudo
167007	chr3	126026071	126026630	+	0	NA	exon (NM_001008487, exon 4 of 10)	exon (NM_001008487, exon 4 of 10)	30775	NM_001008487	54946		NM_017836	ENSG00000114544	SLC41A3	SLC41A1-L2	solute carrier family 41 member 3	protein-coding
208910	chr7	74029221	74030030	+	0	NA	intron (NM_001278918, intron 1 of 27)	intron (NM_001278918, intron 1 of 27)	1452	NM_001278917	2006		NM_000501	ENSG00000049540	ELN	ADCL1|SVAS|WBS|WS	elastin	protein-coding
41638	chr11	66478801	66479350	+	0	NA	intron (NR_120586, intron 1 of 3)	intron (NR_120586, intron 1 of 3)	1174	NR_120586	101928069		NR_120586	ENSG00000255517	DPP3-DT	-	DPP3 divergent transcript	ncRNA
114551	chr19	12880971	12882550	+	0	NA	promoter-TSS (NM_001375)	promoter-TSS (NM_001375)	-311	NM_001375	1777		NM_001375	ENSG00000105612	DNASE2	AIPCS|DNASE2A|DNL|DNL2	deoxyribonuclease 2, lysosomal	protein-coding
25220	chr10	5809121	5809950	+	0	NA	intron (NM_001115156, intron 1 of 9)	intron (NM_001115156, intron 1 of 9)	3899	NM_001494	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
67155	chr14	68770921	68771180	+	0	NA	Intergenic	L2c|LINE|L2	22017	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
108078	chr18	59921321	59921830	+	0	NA	Intergenic	Intergenic	21579	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
57903	chr12	123456171	123456330	+	0	NA	Intergenic	AluSg|SINE|Alu	-1889	NR_104103	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
214262	chr7	148963901	148964100	+	0	NA	TTS (NR_004393)	TTS (NR_004393)	685	NR_004393	6086		NR_004393	ENSG00000252316	RNY4	HY4|Y4	RNA, Ro60-associated Y4	ncRNA
239044	chrY	7239951	7241230	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-33382	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
1870	chr1	6421751	6422330	+	0	NA	Intergenic	MIR|SINE|MIR	-2121	NM_019089	54626		NM_019089	ENSG00000069812	HES2	bHLHb40	hes family bHLH transcription factor 2	protein-coding
197211	chr6	63642221	63642480	+	0	NA	intron (NM_001290260, intron 1 of 3)	intron (NM_001290260, intron 1 of 3)	-4176	NM_015153	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
191586	chr6	12031321	12031930	+	0	NA	intron (NM_002114, intron 2 of 8)	L1M4a2|LINE|L1	19313	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
181045	chr5	35954221	35954500	+	0	NA	exon (NM_152404, exon 7 of 7)	exon (NM_152404, exon 7 of 7)	15559	NR_104630	100506406		NR_104630	ENSG00000249748	CAPSL-DT	lnc-IL7R-1	CAPSL divergent transcript	ncRNA
97478	chr17	43776871	43777050	+	0	NA	intron (NM_004090, intron 1 of 2)	intron (NM_004090, intron 1 of 2)	2017	NM_004090	1845		NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
28131	chr10	43433871	43434480	+	0	NA	Intergenic	MER90|LTR|ERV1	-2673	NM_001355446	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
154457	chr22	35430621	35431080	+	0	NA	Intergenic	Intergenic	30710	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
70575	chr14	102602701	102603100	+	0	NA	intron (NM_015156, intron 2 of 11)	AluJb|SINE|Alu	10251	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
139323	chr2	219549451	219549550	+	0	NA	promoter-TSS (NR_036082)	promoter-TSS (NR_036082)	-353	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
24208	chr1	236100721	236100980	+	0	NA	Intergenic	Intergenic	-35760	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
52879	chr12	57190451	57190780	+	0	NA	intron (NM_002332, intron 42 of 88)	intron (NM_002332, intron 42 of 88)	-3889	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
209249	chr7	75883151	75883850	+	0	NA	intron (NM_001346186, intron 4 of 5)	AluSx4|SINE|Alu	4466	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
139247	chr2	219383751	219384430	+	0	NA	intron (NR_134970, intron 7 of 12)	intron (NR_134970, intron 7 of 12)	3272	NM_001319118	23549		NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
119371	chr19	40157001	40157550	+	0	NA	Intergenic	AluJr|SINE|Alu	-34151	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
99253	chr17	49714201	49714400	+	0	NA	intron (NM_030802, intron 7 of 7)	intron (NM_030802, intron 7 of 7)	-6336	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
190683	chr5	181462951	181463130	+	0	NA	Intergenic	Intergenic	95753	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
193998	chr6	31778901	31779330	+	0	NA	exon (NM_006295, exon 29 of 30).4	exon (NM_006295, exon 29 of 30).4	-1787	NM_025258	80737		NM_025258	ENSG00000204396	VWA7	C6orf27|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding
166293	chr3	112554121	112554380	+	0	NA	intron (NM_022488, intron 2 of 11)	LTR7B|LTR|ERV1	-7070	NM_001348906	55032		NM_017945	ENSG00000138459	SLC35A5	-	solute carrier family 35 member A5	protein-coding
19389	chr1	174029651	174029950	+	0	NA	Intergenic	L1PA3|LINE|L1	-7443	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
161766	chr3	44864901	44866180	+	0	NA	3' UTR (NM_144638, exon 3 of 3)	3' UTR (NM_144638, exon 3 of 3)	3628	NM_144638	131616		NM_144638	ENSG00000169964	TMEM42	-	transmembrane protein 42	protein-coding
31772	chr10	98136651	98137150	+	0	NA	intron (NM_001351012, intron 1 of 8)	Tigger4b|DNA|TcMar-Tigger	2243	NM_001256619	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
29605	chr10	71751321	71751780	+	0	NA	intron (NM_022153, intron 6 of 6)	intron (NM_022153, intron 6 of 6)	-13700	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
187074	chr5	140170671	140170830	+	0	NA	Intergenic	AluJb|SINE|Alu	-4438	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
82563	chr16	18603701	18604180	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	32692	NR_003569	653190		NR_003569	ENSG00000291057	ABCC6P1	-	ATP binding cassette subfamily C member 6 pseudogene 1	pseudo
96088	chr17	39611951	39612330	+	0	NA	Intergenic	Intergenic	-4220	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
162109	chr3	46912101	46912300	+	0	NA	Intergenic	AluY|SINE|Alu	29951	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
28838	chr10	62414321	62414580	+	0	NA	intron (NM_199450, intron 3 of 4)	AluJo|SINE|Alu	-39323	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
198516	chr6	106520601	106521400	+	0	NA	exon (NM_001624, exon 2 of 20)	exon (NM_001624, exon 2 of 20)	9145	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
222003	chr8	130015901	130017930	+	0	NA	promoter-TSS (NM_001353289)	promoter-TSS (NM_001353289)	214	NM_001353270	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
184626	chr5	107295851	107296230	+	0	NA	Intergenic	Intergenic	-285026	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
220305	chr8	98293301	98293530	+	0	NA	intron (NM_024759, intron 1 of 11)	intron (NM_024759, intron 1 of 11)	820	NR_135746	79815		NM_024759	ENSG00000104361	NIPAL2	NPAL2|SLC57A4	NIPA like domain containing 2	protein-coding
78798	chr15	99474221	99474480	+	0	NA	Intergenic	Intergenic	-91067	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
226242	chr9	66700351	66700450	+	0	NA	Intergenic	AluY|SINE|Alu	-200325	NM_033160	26149		NM_033160	ENSG00000274349	ZNF658	-	zinc finger protein 658	protein-coding
95157	chr17	35088401	35090110	+	0	NA	promoter-TSS (NR_037713)	promoter-TSS (NR_037713)	-29	NR_037713	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
198831	chr6	109096401	109096600	+	0	NA	intron (NM_001350663, intron 1 of 9)	intron (NM_001350663, intron 1 of 9)	993	NM_001271852	285753		NM_173830	ENSG00000183137	CEP57L1	C6orf182|bA487F23.2|cep57R	centrosomal protein 57 like 1	protein-coding
131332	chr2	96140851	96141700	+	0	NA	Intergenic	Intergenic	-2839	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
133719	chr2	127376771	127376930	+	0	NA	intron (NM_001371911, intron 1 of 16)	AluJr|SINE|Alu	11125	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
203717	chr7	1066821	1067080	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	11580	NM_001303474	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
77680	chr15	85617971	85618130	+	0	NA	intron (NM_007200, intron 8 of 36)	intron (NM_007200, intron 8 of 36)	-1900	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
68938	chr14	91387101	91387600	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	30470	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
136777	chr2	181461801	181462480	+	0	NA	intron (NM_000885, intron 2 of 27)	intron (NM_000885, intron 2 of 27)	4754	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
237812	chrX	129955121	129955780	+	0	NA	Intergenic	Intergenic	-25529	NM_001184772	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
100421	chr17	60602001	60602430	+	0	NA	intron (NM_003620, intron 1 of 5)	intron (NM_003620, intron 1 of 5)	2022	NM_003620	8493		NM_003620	ENSG00000170836	PPM1D	IDDGIP|JDVS|PP2C-DELTA|WIP1	protein phosphatase, Mg2+/Mn2+ dependent 1D	protein-coding
206779	chr7	36723301	36723600	+	0	NA	intron (NM_001177506, intron 1 of 21)	intron (NM_001177506, intron 1 of 21)	1044	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
30114	chr10	74001521	74001780	+	0	NA	intron (NM_014000, intron 1 of 21)	intron (NM_014000, intron 1 of 21)	3534	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
193966	chr6	31701521	31702000	+	0	NA	promoter-TSS (NR_039789)	promoter-TSS (NR_039789)	-669	NR_039789	100616230		NR_039789	ENSG00000266776	MIR4646	mir-4646	microRNA 4646	ncRNA
98177	chr17	46100071	46100230	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	92632	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
139029	chr2	218404971	218407980	+	0	NA	TTS (NM_001206878)	TTS (NM_001206878)	3829	NR_029500	407017		NR_029500	ENSG00000199121	MIR26B	MIRN26B|hsa-mir-26b|miR-26b	microRNA 26b	ncRNA
209027	chr7	74455351	74456450	+	0	NA	intron (NM_001199207, intron 1 of 26)	intron (NM_001199207, intron 1 of 26)	1994	NM_005685	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
161798	chr3	45225121	45226700	+	0	NA	exon (NM_015444, exon 1 of 1)	exon (NM_015444, exon 1 of 1)	377	NM_015444	25907		NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158	protein-coding
124165	chr19	56112671	56112850	+	0	NA	intron (NM_001351682, intron 1 of 1)	intron (NM_001351682, intron 1 of 1)	8535	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
119908	chr19	41595051	41595950	+	0	NA	Intergenic	Intergenic	19334	NM_001098506	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
11980	chr1	94438701	94438900	+	0	NA	intron (NM_001122674, intron 1 of 8)	Tigger1|DNA|TcMar-Tigger	20411	NM_002858	5825		NM_002858	ENSG00000117528	ABCD3	ABC43|CBAS5|PMP70|PXMP1|ZWS2	ATP binding cassette subfamily D member 3	protein-coding
177954	chr4	139014021	139014480	+	0	NA	Intergenic	Intergenic	-1531	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
72676	chr15	38545521	38545780	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	19164	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
105541	chr17	83195351	83195880	+	0	NA	Intergenic	Intergenic	-31282	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
229772	chr9	125199951	125201450	+	0	NA	promoter-TSS (NR_135145)	promoter-TSS (NR_135145)	158	NM_001174153	10244		NM_005833	ENSG00000136933	RABEPK	RAB9P40|bA65N13.1|p40	Rab9 effector protein with kelch motifs	protein-coding
68289	chr14	77139651	77140330	+	0	NA	intron (NM_174976, intron 1 of 2)	CpG	754	NM_001364172	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
215040	chr7	152463301	152464950	+	0	NA	promoter-TSS (NR_027387)	promoter-TSS (NR_027387)	1	NR_027387	100128822		NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
39926	chr11	62530451	62530550	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	15164	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
5798	chr1	26554001	26554830	+	0	NA	promoter-TSS (NR_031740)	promoter-TSS (NR_031740)	-127	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
160105	chr3	19149221	19149580	+	0	NA	intron (NM_144633, intron 1 of 15)	intron (NM_144633, intron 1 of 15)	890	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
44211	chr11	96308901	96309100	+	0	NA	intron (NM_032427, intron 1 of 4)	(ATAAA)n|Simple_repeat|Simple_repeat	-32438	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
18783	chr1	167533621	167534150	+	0	NA	Intergenic	Intergenic	-15356	NM_198053	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
222309	chr8	133490301	133490900	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	81287	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
140224	chr2	231724401	231724600	+	0	NA	Intergenic	Intergenic	11186	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
187938	chr5	149036321	149036780	+	0	NA	intron (NM_024577, intron 8 of 16)	intron (NM_024577, intron 8 of 16)	25859	NR_030310	693169		NR_030310	ENSG00000207714	MIR584	MIRN584|hsa-mir-584	microRNA 584	ncRNA
191807	chr6	14453951	14454050	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-168546	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
216995	chr8	23117751	23117850	+	0	NA	TTS (NM_003841)	TTS (NM_003841)	14879	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
62687	chr13	102721751	102722130	+	0	NA	Intergenic	Intergenic	-27419	NM_001010977	196541		NM_001010977	ENSG00000139780	METTL21C	C13orf39	methyltransferase 21C, AARS1 lysine	protein-coding
119658	chr19	40825601	40825800	+	0	NA	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	-14600	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
177604	chr4	121041501	121042030	+	0	NA	intron (NM_024574, intron 2 of 3)	intron (NM_024574, intron 2 of 3)	30770	NM_024574	79625		NM_024574	ENSG00000173376	NDNF	C4orf31|HH25|NORD	neuron derived neurotrophic factor	protein-coding
93075	chr17	17586121	17586580	+	0	NA	intron (NM_001267551, intron 1 of 6)	intron (NM_001267551, intron 1 of 6)	-3904	NM_007169	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
116145	chr19	17379201	17379900	+	0	NA	Intergenic	Intergenic	-2208	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
71474	chr14	105931871	105932050	+	0	NA	non-coding (NR_026800, exon 6 of 6).2	non-coding (NR_026800, exon 6 of 6).2	13981	NR_026800	9834		NM_014151	ENSG00000226777	FAM30A	C14orf110|HSPC053|KIAA0125	family with sequence similarity 30 member A	ncRNA
238232	chrX	140764671	140765030	+	0	NA	intron (NR_104228, intron 3 of 3)	(GGCTCCC)n|Simple_repeat|Simple_repeat	19708	NM_004065	1038		NM_004065		CDR1	CDR|CDR34|CDR62A	cerebellar degeneration related 1	unknown
149421	chr21	31228771	31228930	+	0	NA	intron (NM_001353694, intron 6 of 27)	THE1C|LTR|ERVL-MaLR	-67910	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
49944	chr12	40015451	40015630	+	0	NA	intron (NM_052885, intron 3 of 9)	intron (NM_052885, intron 3 of 9)	90541	NM_052885	114134		NM_052885	ENSG00000151229	SLC2A13	HMIT	solute carrier family 2 member 13	protein-coding
117755	chr19	29671121	29672400	+	0	NA	intron (NM_024310, intron 1 of 1)	intron (NM_024310, intron 1 of 1)	6299	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
84514	chr16	30511571	30511730	+	0	NA	intron (NM_002209, intron 24 of 30)	intron (NM_002209, intron 24 of 30)	7731	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
63648	chr14	20971001	20972750	+	0	NA	Intergenic	Intergenic	16388	NM_002934	6036		NM_002934	ENSG00000169385	RNASE2	EDN|RAF3|RNS2	ribonuclease A family member 2	protein-coding
141179	chr2	239282951	239283500	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-22237	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
43759	chr11	86193201	86193880	+	0	NA	Intergenic	Intergenic	-50844	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
168800	chr3	152197801	152198400	+	0	NA	intron (NR_136178, intron 1 of 2)	LTR54|LTR|ERV1	7329	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
18128	chr1	160737571	160737730	+	0	NA	Intergenic	AluSx|SINE|Alu	-1407	NM_001282594	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
203560	chr7	896601	897200	+	0	NA	TTS (NM_015949)	TTS (NM_015949)	20346	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
51767	chr12	53320971	53322180	+	0	NA	promoter-TSS (NM_001173466)	promoter-TSS (NM_001173466)	35	NM_015665	8086		NM_015665	ENSG00000094914	AAAS	AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003	aladin WD repeat nucleoporin	protein-coding
113061	chr19	8192221	8192680	+	0	NA	Intergenic	L2c|LINE|L2	-16920	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
112632	chr19	6778471	6779200	+	0	NA	intron (NM_005428, intron 1 of 26)	AluJo|SINE|Alu	6127	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
177703	chr4	121953651	121954150	+	0	NA	Intergenic	Intergenic	-1840	NM_001130698	7222		NM_003305	ENSG00000138741	TRPC3	SCA41|TRP3	transient receptor potential cation channel subfamily C member 3	protein-coding
185802	chr5	132427201	132429400	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	17371	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
126927	chr2	33069821	33070080	+	0	NA	intron (NM_206943, intron 3 of 33)	intron (NM_206943, intron 3 of 33)	-64646	NM_001166266	4052		NM_000627	ENSG00000049323	LTBP1	ARCL2E	latent transforming growth factor beta binding protein 1	protein-coding
159420	chr3	13551801	13552000	+	0	NA	intron (NM_001004019, intron 1 of 17)	AluJr|SINE|Alu	2775	NM_001004019	2199		NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
231933	chr9	133117721	133118580	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	3090	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
109224	chr19	488301	489850	+	0	NA	intron (NM_001385599, intron 2 of 4)	CpG	2549	NM_001385599	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
18821	chr1	167654871	167655500	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	24953	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
4845	chr1	23688521	23689000	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3019	NM_001199802	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
26467	chr10	17607521	17608050	+	0	NA	intron (NM_014241, intron 1 of 6)	intron (NM_014241, intron 1 of 6)	9589	NM_014241	9200		NM_014241	ENSG00000165996	HACD1	CAP|CMYP11|MYONP|PTPLA	3-hydroxyacyl-CoA dehydratase 1	protein-coding
127863	chr2	45655621	45655880	+	0	NA	intron (NM_005400, intron 1 of 14)	AluJr|SINE|Alu	4075	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
203689	chr7	1027471	1029280	+	0	NA	promoter-TSS (NM_001350969)	promoter-TSS (NM_001350969)	-6	NR_146967	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
133687	chr2	127103121	127103580	+	0	NA	intron (NM_139345, intron 1 of 15)	intron (NM_139345, intron 1 of 15)	3804	NM_001320641	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
108934	chr18	79472601	79473000	+	0	NA	intron (NM_001278670, intron 8 of 8)	intron (NM_001278670, intron 8 of 8)	72501	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
92268	chr17	8057601	8058230	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	18856	NM_001039131	247		NM_001141	ENSG00000179593	ALOX15B	15-LOX-2	arachidonate 15-lipoxygenase type B	protein-coding
1520	chr1	2973501	2973700	+	0	NA	Intergenic	Intergenic	-47867	NM_080431	140625		NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin related protein T2	protein-coding
43279	chr11	75812721	75813280	+	0	NA	TTS (NR_144531)	TTS (NR_144531)	1797	NR_144531	100506113		NR_144531	ENSG00000255507	UVRAG-DT	-	UVRAG divergent transcript	ncRNA
193612	chr6	30736371	30738280	+	0	NA	intron (NM_001318875, intron 7 of 11).2	AluSz|SINE|Alu	5362	NM_005803	10211		NM_005803	ENSG00000137312	FLOT1	-	flotillin 1	protein-coding
112555	chr19	6551701	6552550	+	0	NA	Intergenic	Intergenic	21099	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
143042	chr20	21300821	21301080	+	0	NA	Intergenic	Intergenic	-2381	NM_012255	22803		NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
120533	chr19	44902601	44902800	+	0	NA	intron (NM_001128916, intron 9 of 9)	L2b|LINE|L2	-3096	NM_001302688	348		NM_000041	ENSG00000130203	APOE	AD2|APO-E|ApoE4|LDLCQ5|LPG	apolipoprotein E	protein-coding
3956	chr1	18639221	18639480	+	0	NA	intron (NM_001135254, intron 4 of 8)	intron (NM_001135254, intron 4 of 8)	8504	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
213103	chr7	131190051	131190550	+	0	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	80206	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
166688	chr3	120418671	120419250	+	0	NA	intron (NM_007085, intron 2 of 10)	intron (NM_007085, intron 2 of 10)	-23231	NR_029584	406975		NR_029584	ENSG00000284121	MIR198	MIRN198|miR-198	microRNA 198	ncRNA
121636	chr19	47457271	47457980	+	0	NA	intron (NM_015063, intron 2 of 9)	(GCGG)n|Simple_repeat|Simple_repeat	14268	NM_015063	6543		NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
174207	chr4	37666651	37667180	+	0	NA	intron (NM_001085400, intron 1 of 6)	intron (NM_001085400, intron 1 of 6)	19461	NM_001085399	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
190298	chr5	179596521	179597230	+	0	NA	non-coding (NR_110560, exon 8 of 9).2	non-coding (NR_110560, exon 8 of 9).2	6866	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
155969	chr22	39897371	39897530	+	0	NA	Intergenic	L2a|LINE|L2	-3634	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
33691	chr10	120685551	120685650	+	0	NA	Intergenic	Intergenic	87651	NR_103717	404216		NM_001012711	ENSG00000177234	LINC01561	C10orf85	long intergenic non-protein coding RNA 1561	ncRNA
24186	chr1	235917321	235917800	+	0	NA	Intergenic	Intergenic	-33847	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
221130	chr8	118279471	118279780	+	0	NA	intron (NM_001101676, intron 4 of 4)	intron (NM_001101676, intron 4 of 4)	-167799	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
55035	chr12	96390551	96390650	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSx|SINE|Alu	9839	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
28720	chr10	61898851	61899600	+	0	NA	Intergenic	Intergenic	-2474	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
71732	chr15	20505751	20506930	+	0	NA	promoter-TSS (NR_036432)	promoter-TSS (NR_036432)	-160	NR_036432	283755		NM_001024682	ENSG00000290376	HERC2P3	D15F37S4	HERC2 pseudogene 3	pseudo
209276	chr7	75919901	75920100	+	0	NA	intron (NM_001367562, intron 2 of 16)	intron (NM_001367562, intron 2 of 16)	4803	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
76009	chr15	71291771	71292000	+	0	NA	intron (NM_024817, intron 5 of 16)	HAL1|LINE|L1	-102826	NR_120351	101929196		NR_120348	ENSG00000259964	THSD4-AS1	-	THSD4 antisense RNA 1	ncRNA
86576	chr16	67232101	67232300	+	0	NA	intron (NM_001318202, intron 15 of 23)	intron (NM_001318202, intron 15 of 23)	5070	NM_014187	29100		NM_014187	ENSG00000168701	TMEM208	HSPC171|SND2|hSND2	transmembrane protein 208	protein-coding
143199	chr20	24947651	24947750	+	0	NA	Intergenic	L1PA7|LINE|L1	-1569	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
63426	chr13	114095871	114096600	+	0	NA	intron (NM_001320821, intron 1 of 25).2	CpG	-18280	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
21923	chr1	207847171	207847530	+	0	NA	Intergenic	L1ME3A|LINE|L1	-24647	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
30535	chr10	79444051	79447050	+	0	NA	promoter-TSS (NM_153367)	promoter-TSS (NM_153367)	74	NM_153367	219654		NM_153367	ENSG00000165424	ZCCHC24	C10orf56|Z3CXXC8	zinc finger CCHC-type containing 24	protein-coding
89558	chr16	89248771	89248930	+	0	NA	Intergenic	Intergenic	31147	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
80647	chr16	2997371	2998080	+	0	NA	Intergenic	Intergenic	-1230	NR_110948	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
172503	chr4	2257301	2257700	+	0	NA	intron (NM_006454, intron 3 of 5)	intron (NM_006454, intron 3 of 5)	4609	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
21892	chr1	207808471	207809000	+	0	NA	intron (NR_135299, intron 4 of 5)	intron (NR_135299, intron 4 of 5)	-6212	NR_029518	407025		NR_029518	ENSG00000284203	MIR29B2	MIRN29B2	microRNA 29b-2	ncRNA
166415	chr3	113726071	113726230	+	0	NA	intron (NM_025146, intron 1 of 4)	intron (NM_025146, intron 1 of 4)	20099	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
16707	chr1	155230971	155231430	+	0	NA	Intergenic	Intergenic	-3666	NR_002188	2630		NR_002188	ENSG00000291137	GBA1LP	Beta-GC|GBA|GBAP|GBAP1|GC|GLUC	glucosylceramidase beta 1 like, pseudogene	pseudo
218828	chr8	59121571	59121930	+	0	NA	non-coding (NR_149030, exon 2 of 2)	non-coding (NR_149030, exon 2 of 2)	2540	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
75298	chr15	65190271	65190830	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-5208	NM_006660	10845		NM_006660	ENSG00000166855	CLPX	EPP2	caseinolytic mitochondrial matrix peptidase chaperone subunit X	protein-coding
215454	chr7	157924551	157925250	+	0	NA	intron (NM_130842, intron 10 of 21)	intron (NM_130842, intron 10 of 21)	70315	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
225401	chr9	35048721	35049250	+	0	NA	Intergenic	AluSz|SINE|Alu	6745	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
18056	chr1	160631671	160631830	+	0	NA	intron (NR_104401, intron 3 of 5)	MLT1B|LTR|ERVL-MaLR	15294	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
90330	chr17	1174621	1175080	+	0	NA	intron (NM_001322841, intron 1 of 22)	MamTip3|DNA|hAT-Tip100	5131	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
9939	chr1	54491471	54491630	+	0	NA	Intergenic	Intergenic	-56678	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
94182	chr17	28547651	28548650	+	0	NA	intron (NM_054035, intron 2 of 3)	intron (NM_054035, intron 2 of 3)	4474	NM_001330166	9094		NM_005148	ENSG00000109103	UNC119	CORD24|HRG4|IMD13|POC7|POC7A	unc-119 lipid binding chaperone	protein-coding
152074	chr22	19730321	19731630	+	0	NA	Intergenic	CpG	7436	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
88664	chr16	85657071	85657430	+	0	NA	intron (NM_001278184, intron 6 of 14)	intron (NM_001278184, intron 6 of 14)	31704	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
98379	chr17	46491671	46492980	+	0	NA	Intergenic	L1ME1|LINE|L1	-20385	NM_001006607	474170		NM_001006607	ENSG00000238083	LRRC37A2	LRRC37	leucine rich repeat containing 37 member A2	protein-coding
163778	chr3	52385071	52385480	+	0	NA	intron (NM_015512, intron 53 of 77)	intron (NM_015512, intron 53 of 77)	24733	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
138802	chr2	216139871	216140230	+	0	NA	intron (NM_021141, intron 12 of 20)	intron (NM_021141, intron 12 of 20)	30702	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
234427	chrX	16831951	16832250	+	0	NA	intron (NM_018360, intron 5 of 9)	MIRb|SINE|MIR	37763	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
40384	chr11	64004001	64004650	+	0	NA	intron (NM_014067, intron 4 of 10)	intron (NM_014067, intron 4 of 10)	18472	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
191301	chr6	6676821	6677250	+	0	NA	Intergenic	Intergenic	-54209	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
104429	chr17	81074421	81074850	+	0	NA	intron (NM_001385147, intron 2 of 12)	CpG	-8354	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
91896	chr17	7290001	7290400	+	0	NA	intron (NM_015982, intron 5 of 8)	intron (NM_015982, intron 5 of 8)	4439	NM_015982	51087		NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y-box binding protein 2	protein-coding
48692	chr12	10596771	10596930	+	0	NA	intron (NR_028045, intron 3 of 6)	intron (NR_028045, intron 3 of 6)	2985	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
176318	chr4	87499871	87500030	+	0	NA	intron (NM_004684, intron 1 of 10)	intron (NM_004684, intron 1 of 10)	29553	NM_001291977	8404		NM_004684	ENSG00000152583	SPARCL1	MAST 9|MAST9|PIG33|SC1	SPARC like 1	protein-coding
84135	chr16	29721321	29722280	+	0	NA	Intergenic	LTR13|LTR|ERVK	24190	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
27245	chr10	29636121	29636800	+	0	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	-1489	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
191034	chr6	3159771	3161180	+	0	NA	Intergenic	Intergenic	-2931	NM_001069	7280		NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
13521	chr1	114764571	114765130	+	0	NA	Intergenic	THE1C-int|LTR|ERVL-MaLR	-6800	NM_001242891	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
119877	chr19	41515001	41515400	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-14551	NR_040109	100505495		NR_040109	ENSG00000267107	PCAT19	LINC01190	prostate cancer associated transcript 19	ncRNA
152938	chr22	22818671	22819530	+	0	NA	Intergenic	Intergenic	-3676	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
161284	chr3	39315501	39315700	+	0	NA	Intergenic	Intergenic	-14109	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
31252	chr10	91973751	91973850	+	0	NA	intron (NR_165098, intron 15 of 38)	AluYa5|SINE|Alu	50030	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
15283	chr1	149792521	149793380	+	0	NA	intron (NR_166122, intron 6 of 6)	CpG	10256	NR_166121	2209		NM_000566	ENSG00000150337	FCGR1A	CD64|CD64A|FCG1|FCGR1|FCRI|FcgammaRI|IGFR1	Fc gamma receptor Ia	protein-coding
178630	chr4	152183471	152183850	+	0	NA	Intergenic	LTR54B|LTR|ERV1	82842	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
99773	chr17	51115371	51115530	+	0	NA	intron (NM_001130527, intron 1 of 29)	intron (NM_001130527, intron 1 of 29)	5418	NM_001130527	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
91351	chr17	4504021	4505350	+	0	NA	intron (NM_001124758, intron 1 of 12)	intron (NM_001124758, intron 1 of 12)	5804	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
46935	chr11	134348971	134350330	+	0	NA	intron (NM_138342, intron 5 of 19)	L1MB3|LINE|L1	17662	NM_001370463	89944		NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	galactosidase beta 1 like 2	protein-coding
95359	chr17	35858621	35858880	+	0	NA	intron (NM_152781, intron 9 of 14).2	intron (NM_152781, intron 9 of 14).2	10141	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
93493	chr17	18962401	18962600	+	0	NA	intron (NM_152351, intron 5 of 14)	MER102c|DNA|hAT-Charlie	10335	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
13670	chr1	116564451	116564880	+	0	NA	intron (NR_026665, intron 1 of 5)	THE1B|LTR|ERVL-MaLR	-4554	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
61781	chr13	75294251	75294350	+	0	NA	intron (NM_014832, intron 18 of 20)	intron (NM_014832, intron 18 of 20)	53712	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
65789	chr14	54569001	54569600	+	0	NA	intron (NM_015589, intron 2 of 12)	intron (NM_015589, intron 2 of 12)	1688	NM_001161576	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
9617	chr1	52403451	52405180	+	0	NA	promoter-TSS (NM_032864)	promoter-TSS (NM_032864)	108	NM_004153	4998		NM_004153	ENSG00000085840	ORC1	HSORC1|ORC1L|PARC1	origin recognition complex subunit 1	protein-coding
141146	chr2	239230351	239231050	+	0	NA	intron (NM_006037, intron 3 of 26)	intron (NM_006037, intron 3 of 26)	-35243	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
132056	chr2	101154821	101155080	+	0	NA	non-coding (NR_135594, exon 2 of 2)	non-coding (NR_135594, exon 2 of 2)	3290	NR_135594	100506286		NR_135594	ENSG00000272902	TBC1D8-AS1	-	TBC1D8 antisense RNA 1	ncRNA
168214	chr3	141261351	141261750	+	0	NA	intron (NM_152282, intron 4 of 7)	intron (NM_152282, intron 4 of 7)	29725	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
15076	chr1	148461771	148461930	+	0	NA	Intergenic	L1PA3|LINE|L1	-1930	NR_027468	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
123458	chr19	54151271	54151930	+	0	NA	intron (NM_014516, intron 13 of 17).8	intron (NM_014516, intron 13 of 17).8	8121	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
19187	chr1	172180371	172182400	+	0	NA	intron (NM_001350204, intron 15 of 20)	(AC)n|Simple_repeat|Simple_repeat	-36550	NR_103486	100628315		NR_038397		DNM3OS	DNM3-AS1|MIR199A2HG	DNM3 opposite strand/antisense RNA	ncRNA
198337	chr6	104682971	104683500	+	0	NA	Intergenic	Intergenic	176311	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
191978	chr6	16155951	16156450	+	0	NA	Intergenic	LTR1D1|LTR|ERV1	14644	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
14049	chr1	120767021	120767600	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-38246	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
31434	chr10	95806951	95807250	+	0	NA	intron (NR_038444, intron 4 of 5)	L1MC5a|LINE|L1	50937	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
59019	chr13	20192501	20193390	+	0	NA	promoter-TSS (NM_004004)	promoter-TSS (NM_004004)	-7	NM_004004	2706		NM_004004	ENSG00000165474	GJB2	BAPS|CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein beta 2	protein-coding
199943	chr6	127910571	127910930	+	0	NA	intron (NM_001164687, intron 1 of 5).2	L1MC3|LINE|L1	7881	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
74747	chr15	63212001	63212630	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	22709	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
108162	chr18	62771451	62771750	+	0	NA	intron (NM_194449, intron 1 of 16)	Tigger4|DNA|TcMar-Tigger	56059	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
122161	chr19	48890771	48890930	+	0	NA	intron (NM_003323, intron 6 of 12)	intron (NM_003323, intron 6 of 12)	7894	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
105325	chr17	82588521	82589050	+	0	NA	intron (NM_004514, intron 8 of 8)	AluSx3|SINE|Alu	59659	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
121114	chr19	45973151	45973480	+	0	NA	exon (NM_002516, exon 1 of 4)	exon (NM_002516, exon 1 of 4)	550	NM_002516	4858		NM_002516	ENSG00000104967	NOVA2	ANOVA|NEDASB|NOVA-2|NOVA3	NOVA alternative splicing regulator 2	protein-coding
204444	chr7	3564901	3565100	+	0	NA	intron (NM_152744, intron 1 of 44)	LTR67B|LTR|ERVL	263748	NM_152744	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
161330	chr3	39502201	39502400	+	0	NA	intron (NM_182935, intron 3 of 3)	CpG	34620	NM_001278322	4336		NM_182935	ENSG00000168314	MOBP	-	myelin associated oligodendrocyte basic protein	protein-coding
216482	chr8	19815151	19815450	+	0	NA	Intergenic	AluSq4|SINE|Alu	-1849	NR_148457	55174		NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
159602	chr3	15204051	15204550	+	0	NA	intron (NR_027927, intron 1 of 4)	intron (NR_027927, intron 1 of 4)	1659	NR_027927	344875		NR_027927	ENSG00000291281	COL6A4P1	COL6A4|COL6A4P|DIVA|DVWA|FAME3|VWA6	collagen type VI alpha 4 pseudogene 1	pseudo
107900	chr18	57004251	57005000	+	0	NA	intron (NM_052834, intron 25 of 26)	intron (NM_052834, intron 25 of 26)	67494	NR_048536	100885779		NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR|lincRNA-ST8SIA3	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
110559	chr19	2110701	2111650	+	0	NA	intron (NM_001374799, intron 26 of 31)	intron (NM_001374799, intron 26 of 31)	14260	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
239450	chrY	56713951	56714050	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-240255	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
23769	chr1	232978121	232978380	+	0	NA	non-coding (NR_138027, exon 5 of 5)	non-coding (NR_138027, exon 5 of 5)	27408	NR_138027	84284		NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase|THEP1	nucleoside-triphosphatase, cancer-related	protein-coding
220667	chr8	101140071	101140230	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	30089	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
61823	chr13	75762371	75763100	+	0	NA	intron (NM_001330583, intron 2 of 28)	intron (NM_001330583, intron 2 of 28)	2074	NM_015842	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
76663	chr15	75687171	75687550	+	0	NA	exon (NM_001897, exon 3 of 10)	exon (NM_001897, exon 3 of 10)	25488	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
61992	chr13	80361871	80362100	+	0	NA	Intergenic	Intergenic	-20859	NM_005842	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
190266	chr5	179181851	179182150	+	0	NA	intron (NM_014244, intron 4 of 21)	intron (NM_014244, intron 4 of 21)	121627	NM_014594	30832		NM_014594	ENSG00000177932	ZNF354C	KID3	zinc finger protein 354C	protein-coding
207156	chr7	43589321	43590080	+	0	NA	intron (NM_004760, intron 1 of 6)	intron (NM_004760, intron 1 of 6)	6592	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
23538	chr1	229199501	229200500	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-25199	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
159952	chr3	17190671	17191030	+	0	NA	intron (NM_001349090, intron 18 of 21)	intron (NM_001349090, intron 18 of 21)	257654	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
32636	chr10	103691221	103691700	+	0	NA	intron (NM_014631, intron 6 of 13)	intron (NM_014631, intron 6 of 13)	-13245	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
10949	chr1	84165571	84166000	+	0	NA	intron (NM_001375580, intron 1 of 8)	intron (NM_001375580, intron 1 of 8)	1091	NM_001375577	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
107650	chr18	48978801	48979700	+	0	NA	Intergenic	Intergenic	-28539	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
128184	chr2	53789771	53789930	+	0	NA	intron (NM_015701, intron 1 of 13)	AluSz6|SINE|Alu	2806	NM_015701	27248		NM_015701	ENSG00000068912	ERLEC1	C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB	endoplasmic reticulum lectin 1	protein-coding
167834	chr3	133805301	133806390	+	0	NA	promoter-TSS (NM_001379313)	promoter-TSS (NM_001379313)	30	NM_001379313	58477		NM_021203	ENSG00000144867	SRPRB	APMCF1|SR-beta	SRP receptor subunit beta	protein-coding
206746	chr7	36669621	36670130	+	0	NA	intron (NM_001177506, intron 3 of 21)	intron (NM_001177506, intron 3 of 21)	54619	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
2846	chr1	11263921	11264600	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1709	NM_004958	2475		NM_004958	ENSG00000198793	MTOR	FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS	mechanistic target of rapamycin kinase	protein-coding
143924	chr20	32675571	32675930	+	0	NA	Intergenic	Intergenic	-1809	NM_182584	284805		NM_182584	ENSG00000198547	C20orf203	-	chromosome 20 open reading frame 203	protein-coding
46457	chr11	128200321	128200580	+	0	NA	Intergenic	Intergenic	-8316	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
52661	chr12	56318151	56318450	+	0	NA	exon (NM_001127460, exon 25 of 26)	exon (NM_001127460, exon 25 of 26)	-1952	NM_001190991	10330		NM_014255	ENSG00000257727	CNPY2	HP10390|MSAP|TMEM4|ZSIG9	canopy FGF signaling regulator 2	protein-coding
129997	chr2	74052921	74053650	+	0	NA	intron (NM_001366022, intron 3 of 10)	intron (NM_001366022, intron 3 of 10)	50593	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
55342	chr12	103963851	103964430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1664	NM_001363612	6996		NM_003211	ENSG00000139372	TDG	hTDG	thymine DNA glycosylase	protein-coding
207203	chr7	43641071	43641230	+	0	NA	intron (NR_146940, intron 3 of 6)	L1ME2z|LINE|L1	58042	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
30354	chr10	77837521	77838050	+	0	NA	intron (NM_004747, intron 7 of 31).2	intron (NM_004747, intron 7 of 31).2	88970	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
154943	chr22	37235571	37235730	+	0	NA	intron (NM_002872, intron 2 of 6)	intron (NM_002872, intron 2 of 6)	8619	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
238766	chrX	154354821	154355080	+	0	NA	exon (NM_001456, exon 30 of 47)	exon (NM_001456, exon 30 of 47)	19684	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
217815	chr8	36393971	36394200	+	0	NA	Intergenic	L1PA2|LINE|L1	-390289	NR_134267	157855		NM_001031836	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|SPGF79|Slo3	potassium calcium-activated channel subfamily U member 1	protein-coding
130701	chr2	86620951	86621830	+	0	NA	intron (NM_001198954, intron 2 of 7)	intron (NM_001198954, intron 2 of 7)	2475	NM_005667	7844		NM_005667	ENSG00000239305	RNF103	HKF-1|KF-1|KF1|ZFP-103|ZFP103	ring finger protein 103	protein-coding
146760	chr20	50848601	50848800	+	0	NA	intron (NM_198799, intron 4 of 4)	intron (NM_198799, intron 4 of 4)	53639	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
106294	chr18	12837951	12838600	+	0	NA	intron (NM_080422, intron 2 of 9)	intron (NM_080422, intron 2 of 9)	2687	NM_001308287	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
149563	chr21	33219771	33220200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9910	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
99514	chr17	50272121	50272480	+	0	NA	intron (NM_001168215, intron 1 of 5)	intron (NM_001168215, intron 1 of 5)	894	NM_001168215	162461		NM_153229	ENSG00000167105	TMEM92	-	transmembrane protein 92	protein-coding
156490	chr22	41280571	41280730	+	0	NA	intron (NM_001278651, intron 3 of 16)	intron (NM_001278651, intron 3 of 16)	5537	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
116410	chr19	17998721	17999050	+	0	NA	3' UTR (NM_002248, exon 11 of 11)	3' UTR (NM_002248, exon 11 of 11)	-2239	NM_001025604	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
146491	chr20	49883571	49883730	+	0	NA	intron (NR_048540, intron 9 of 11)	intron (NR_048540, intron 9 of 11)	19791	NR_162136	113219455		NR_162136		MIR12122	-	microRNA 12122	ncRNA
185087	chr5	119063651	119064350	+	0	NA	intron (NR_134250, intron 1 of 2)	intron (NR_134250, intron 1 of 2)	6890	NR_134250	105379143		NR_134249		DMXL1-DT	-	DMXL1 divergent transcript	ncRNA
156761	chr22	41843901	41844280	+	0	NA	intron (NR_103834, intron 1 of 21)	intron (NR_103834, intron 1 of 21)	-9425	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
236992	chrX	101622301	101622600	+	0	NA	promoter-TSS (NM_016607)	promoter-TSS (NM_016607)	-680	NM_016607	51566		NM_016607	ENSG00000102401	ARMCX3	ALEX3|GASP6|dJ545K15.2	armadillo repeat containing X-linked 3	protein-coding
162550	chr3	48644071	48645350	+	0	NA	promoter-TSS (NR_039956)	promoter-TSS (NR_039956)	-430	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
78716	chr15	98586121	98586380	+	0	NA	Intergenic	Intergenic	-62289	NM_001291858	3480		NM_000875	ENSG00000140443	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin like growth factor 1 receptor	protein-coding
54720	chr12	93568001	93568530	+	0	NA	intron (NR_038263, intron 1 of 3)	L2a|LINE|L2	-1704	NM_003877	8835		NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
58186	chr12	125049121	125050180	+	0	NA	Intergenic	CpG	-15785	NM_023928	65985		NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
90431	chr17	1354621	1355480	+	0	NA	intron (NR_024058, intron 5 of 6)	FLAM_C|SINE|Alu	45172	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
87422	chr16	70683051	70683630	+	0	NA	intron (NM_138383, intron 1 of 14)	MIRb|SINE|MIR	2713	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
57062	chr12	120909171	120909530	+	0	NA	Intergenic	AluSx1|SINE|Alu	4655	NR_131215	105500240		NR_131215		XLOC_009911	-	uncharacterized LOC105500240	ncRNA
101666	chr17	68310201	68310630	+	0	NA	intron (NM_001352901, intron 2 of 11)	intron (NM_001352901, intron 2 of 11)	18280	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
132635	chr2	108636201	108636730	+	0	NA	intron (NM_001371500, intron 1 of 2)	LTR41|LTR|ERVL	15214	NM_001371500	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
146517	chr20	49916601	49917530	+	0	NA	intron (NR_134564, intron 1 of 2)	AluYm1|SINE|Alu	1243	NR_134564	105372653		NR_134564		LOC105372653	-	uncharacterized LOC105372653	ncRNA
103857	chr17	79732951	79733930	+	0	NA	intron (NM_178543, intron 1 of 5)	intron (NM_178543, intron 1 of 5)	2497	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
233859	chrX	1523951	1524430	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	12995	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
201160	chr6	142935621	142936480	+	0	NA	intron (NM_006734, intron 1 of 9)	AluJb|SINE|Alu	9126	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
143579	chr20	31673271	31673430	+	0	NA	intron (NR_134257, intron 1 of 2)	AluSx1|SINE|Alu	35438	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
137752	chr2	197934221	197934480	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	129757	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
218235	chr8	42050621	42051400	+	0	NA	promoter-TSS (NR_136589)	promoter-TSS (NR_136589)	-740	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
198012	chr6	90105421	90105880	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	191193	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
194952	chr6	35291301	35291700	+	0	NA	intron (NM_003427, intron 8 of 13)	intron (NM_003427, intron 8 of 13)	-6318	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
55708	chr12	107929471	107929630	+	0	NA	Intergenic	MIRb|SINE|MIR	-25779	NR_037629	728739		NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
76565	chr15	75239671	75240070	+	0	NA	Intergenic	MER57E1|LTR|ERV1	-10180	NM_001321990	105376731		NM_001321990	ENSG00000293502	LOC105376731	-	taste receptor cell protein 1-like	pseudo
100563	chr17	62693171	62693330	+	0	NA	3' UTR (NM_006039, exon 30 of 30)	3' UTR (NM_006039, exon 30 of 30)	-12956	NR_147886	105371855		NR_147886	ENSG00000265702	LOC105371855	-	uncharacterized LOC105371855	ncRNA
219925	chr8	86371851	86372150	+	0	NA	intron (NM_007013, intron 2 of 24)	AluSx1|SINE|Alu	29453	NM_007013	11059		NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
148642	chr21	6070171	6070780	+	0	NA	intron (NR_026863, intron 3 of 3).2	(GTGTGTG)n|Simple_repeat|Simple_repeat	10135	NR_026863	114038		NM_153752	ENSG00000185186	LINC00313	C21orf84|CH507-42P11.5|NCRNA00313	long intergenic non-protein coding RNA 313	ncRNA
136142	chr2	174250901	174251400	+	0	NA	Intergenic	AluYc3|SINE|Alu	-2618	NM_013341	29789		NM_013341	ENSG00000138430	OLA1	DOC45|GBP45|GTBP9|GTPBP9|PTD004	Obg like ATPase 1	protein-coding
117583	chr19	21584501	21585250	+	0	NA	Intergenic	Intergenic	-64793	NR_144514	400682		NR_144514		LOC400682	-	zinc finger protein 100-like	pseudo
173217	chr4	6899101	6900480	+	0	NA	Intergenic	L1ME4a|LINE|L1	-9654	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
176279	chr4	87073301	87074200	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	66749	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
32102	chr10	101164221	101164480	+	0	NA	Intergenic	MER72|LTR|ERV1	-11972	NR_120620	101927396		NR_120620	ENSG00000237579	LINC01514	-	long intergenic non-protein coding RNA 1514	ncRNA
194602	chr6	33481271	33481430	+	0	NA	Intergenic	L1MA9|LINE|L1	26774	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
76590	chr15	75353321	75353930	+	0	NA	promoter-TSS (NR_030360)	promoter-TSS (NR_030360)	60	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
229147	chr9	114487401	114488580	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	15225	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
206097	chr7	27200951	27201850	+	0	NA	non-coding (NR_037843, exon 2 of 3)	non-coding (NR_037843, exon 2 of 3)	979	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
214113	chr7	144027251	144027350	+	0	NA	Intergenic	Intergenic	-21648	NM_012365	393046		NM_012365	ENSG00000221836	OR2A5	OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141	olfactory receptor family 2 subfamily A member 5	protein-coding
136099	chr2	173898751	173899630	+	0	NA	Intergenic	Intergenic	64690	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
31506	chr10	96694601	96694800	+	0	NA	intron (NM_152309, intron 2 of 16)	AluJo|SINE|Alu	25814	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
191082	chr6	3719621	3720480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	31663	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
161232	chr3	39192901	39193100	+	0	NA	promoter-TSS (NM_001351377)	promoter-TSS (NM_001351377)	-405	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
130639	chr2	86098371	86099130	+	0	NA	exon (NM_015425, exon 3 of 34)	exon (NM_015425, exon 3 of 34)	7136	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
200637	chr6	136923521	136924000	+	0	NA	intron (NM_001008783, intron 1 of 1)	CpG-24040	1459	NM_001008783	340146		NM_001008783	ENSG00000182747	SLC35D3	FRCL1	solute carrier family 35 member D3	protein-coding
108495	chr18	72972001	72972230	+	0	NA	Intergenic	L1HS|LINE|L1	103075	NR_134647	100505797		NR_134647	ENSG00000263958	NETO1-DT	-	NETO1 divergent transcript	ncRNA
101698	chr17	68462551	68463880	+	0	NA	intron (NM_001278433, intron 1 of 10)	intron (NM_001278433, intron 1 of 10)	-5691	NR_135470	55062		NM_017983	ENSG00000070540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
8092	chr1	39082971	39083130	+	0	NA	Intergenic	Intergenic	-1117	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
231800	chr9	132372701	132373330	+	0	NA	Intergenic	L2b|LINE|L2	-18029	NM_015046	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
84253	chr16	30012951	30013450	+	0	NA	promoter-TSS (NM_001282068)	promoter-TSS (NM_001282068)	396	NM_001282062	8448		NM_003586	ENSG00000149927	DOC2A	Doc2	double C2 domain alpha	protein-coding
46419	chr11	126440801	126441200	+	0	NA	intron (NM_001161707, intron 10 of 13)	intron (NM_001161707, intron 10 of 13)	34913	NM_001254759	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
36487	chr11	6319771	6320580	+	0	NA	exon (NM_145040, exon 1 of 2)	exon (NM_145040, exon 1 of 2)	326	NM_145040	112464		NM_145040	ENSG00000170955	CAVIN3	HSRBC|PRKCDBP|SRBC|cavin-3	caveolae associated protein 3	protein-coding
147108	chr20	53899271	53900250	+	0	NA	Intergenic	Intergenic	-24051	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
237031	chrX	102768551	102769600	+	0	NA	promoter-TSS (NR_038988)	promoter-TSS (NR_038988)	-78	NR_038988	100287765		NR_038988		LINC00630	-	long intergenic non-protein coding RNA 630	ncRNA
136393	chr2	176131101	176131300	+	0	NA	intron (NM_001199746, intron 1 of 1)	intron (NM_001199746, intron 1 of 1)	1495	NM_001199747	3234		NM_019558	ENSG00000175879	HOXD8	HOX4|HOX4E|HOX5.4	homeobox D8	protein-coding
169347	chr3	160368551	160369050	+	0	NA	intron (NR_148401, intron 3 of 18)	intron (NR_148401, intron 3 of 18)	14966	NM_001190242	57560		NM_020800	ENSG00000068885	IFT80	ATD2|CFAP167|FAP167|SRTD2|WDR56	intraflagellar transport 80	protein-coding
73241	chr15	41694801	41695200	+	0	NA	intron (NM_001164273, intron 2 of 23)	intron (NM_001164273, intron 2 of 23)	3415	NR_030356	693211		NR_030356	ENSG00000207766	MIR626	MIRN626|hsa-mir-626	microRNA 626	ncRNA
179749	chr5	242571	243100	+	0	NA	intron (NM_001330758, intron 11 of 12)	HERVK9-int|LTR|ERVK	24515	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
30633	chr10	80444571	80445600	+	0	NA	Intergenic	Intergenic	-9225	NM_001351267	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
234265	chrX	13254651	13254950	+	0	NA	Intergenic	MIR3|SINE|MIR	48652	NR_146309	109729169		NR_146309	ENSG00000235385	LINC02154	MALR	long intergenic non-protein coding RNA 2154	ncRNA
169223	chr3	157127471	157127630	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-4548	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
120328	chr19	43531351	43532080	+	0	NA	Intergenic	L1MC5|LINE|L1	-1473	NM_174945	284346		NM_174945	ENSG00000176472	ZNF575	-	zinc finger protein 575	protein-coding
67315	chr14	69619021	69619650	+	0	NA	intron (NM_014734, intron 1 of 5)	MER41A|LTR|ERV1	7739	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
37077	chr11	12693801	12694250	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	19604	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
237304	chrX	115877901	115878100	+	0	NA	intron (NR_147172, intron 2 of 2)	CpG	37036	NR_147172	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
5512	chr1	25776601	25776880	+	0	NA	intron (NM_001385185, intron 7 of 10)	intron (NM_001385185, intron 7 of 10)	-23453	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
168933	chr3	152361071	152361680	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-20385	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
216434	chr8	19459651	19460680	+	0	NA	intron (NR_148900, intron 3 of 9)	intron (NR_148900, intron 3 of 9)	142380	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
186561	chr5	138470971	138471130	+	0	NA	Intergenic	Intergenic	5571	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
124985	chr2	9215871	9216030	+	0	NA	intron (NM_001135191, intron 1 of 26)	intron (NM_001135191, intron 1 of 26)	9138	NM_003887	8853		NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
5446	chr1	25608071	25609100	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-8206	NM_020379	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
193186	chr6	29729801	29730030	+	0	NA	intron (NR_026972, intron 4 of 5).3	L1MB3|LINE|L1	6481	NM_001098478	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
8402	chr1	40399651	40399750	+	0	NA	intron (NM_001198980, intron 1 of 9)	AluJr|SINE|Alu	2900	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
59057	chr13	20710471	20710630	+	0	NA	intron (NM_001385224, intron 1 of 1)	AluSp|SINE|Alu	6851	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
238798	chrX	154388101	154389000	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	9255	NM_000117	2010		NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
185314	chr5	126777701	126779030	+	0	NA	intron (NR_134488, intron 1 of 11)	CpG	1229	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
173030	chr4	4852721	4853630	+	0	NA	Intergenic	CpG	-6490	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
111335	chr19	3638051	3639300	+	0	NA	intron (NM_001300849, intron 16 of 16)	intron (NM_001300849, intron 16 of 16)	-11860	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
96144	chr17	39671771	39672750	+	0	NA	3' UTR (NM_001291733, exon 4 of 4)	3' UTR (NM_001291733, exon 4 of 4)	3807	NM_002686	5409		NM_002686	ENSG00000141744	PNMT	PENT|PNMTase	phenylethanolamine N-methyltransferase	protein-coding
41282	chr11	65855051	65855350	+	0	NA	3' UTR (NM_005507, exon 4 of 4)	3' UTR (NM_005507, exon 4 of 4)	2980	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
102131	chr17	75067501	75068500	+	0	NA	Intergenic	Intergenic	-19765	NM_001271765	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
128132	chr2	48339101	48339750	+	0	NA	intron (NM_001375445, intron 3 of 7)	THE1C|LTR|ERVL-MaLR	24743	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
20477	chr1	198626551	198627000	+	0	NA	Intergenic	L2a|LINE|L2	-12193	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
167882	chr3	135964121	135964600	+	0	NA	Intergenic	MIRc|SINE|MIR	-1368	NM_002718	5523		NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
95317	chr17	35586551	35587930	+	0	NA	promoter-TSS (NM_001030006)	promoter-TSS (NM_001030006)	-82	NM_001282	163		NM_001282	ENSG00000006125	AP2B1	ADTB2|AP105B|AP2-BETA|CLAPB1	adaptor related protein complex 2 subunit beta 1	protein-coding
213256	chr7	134513201	134513630	+	0	NA	Intergenic	Intergenic	-14152	NM_020299	57016		NM_020299	ENSG00000198074	AKR1B10	AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI	aldo-keto reductase family 1 member B10	protein-coding
195826	chr6	41318521	41319450	+	0	NA	Intergenic	Intergenic	-16623	NM_004828	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
214736	chr7	151047021	151047280	+	0	NA	3' UTR (NM_001282292, exon 16 of 16)	3' UTR (NM_001282292, exon 16 of 16)	-1142	NM_020322	9311		NM_004769	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid sensing ion channel subunit 3	protein-coding
189493	chr5	173204221	173204500	+	0	NA	Intergenic	L1MB3|LINE|L1	30846	NM_001166176	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
35648	chr11	1850021	1851600	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2274	NM_002339	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
91450	chr17	4795521	4796630	+	0	NA	promoter-TSS (NM_002798)	promoter-TSS (NM_002798)	-69	NM_001270481	5694		NM_002798	ENSG00000142507	PSMB6	DELTA|LMPY	proteasome 20S subunit beta 6	protein-coding
121055	chr19	45859551	45859850	+	0	NA	intron (NM_004819, intron 1 of 26)	AluSg7|SINE|Alu	3447	NM_004819	8189		NM_004819	ENSG00000125755	SYMPK	Pta1|SPK|SYM	symplekin scaffold protein	protein-coding
190732	chr6	337871	338450	+	0	NA	intron (NR_104474, intron 3 of 5)	intron (NR_104474, intron 3 of 5)	46103	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
81039	chr16	4307201	4308480	+	0	NA	Intergenic	CpG	-6921	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
85031	chr16	31707851	31708830	+	0	NA	TTS (NR_024034)	TTS (NR_024034)	-4889	NM_001130913	124411		NM_001004300	ENSG00000197302	KRBOX5	ZNF720	KRAB box domain containing 5	protein-coding
75216	chr15	64847021	64847930	+	0	NA	intron (NM_001195059, intron 1 of 4)	intron (NM_001195059, intron 1 of 4)	5560	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
10642	chr1	70223271	70223730	+	0	NA	intron (NM_001350615, intron 1 of 11)	intron (NM_001350615, intron 1 of 11)	2120	NM_001350613	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
106788	chr18	23866371	23866530	+	0	NA	intron (NM_198129, intron 36 of 74)	intron (NM_198129, intron 36 of 74)	-6570	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
86702	chr16	67540871	67541030	+	0	NA	intron (NM_024519, intron 10 of 21)	intron (NM_024519, intron 10 of 21)	3488	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
38403	chr11	44946971	44947330	+	0	NA	intron (NM_001258323, intron 1 of 7)	intron (NM_001258323, intron 1 of 7)	3010	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
176246	chr4	86935701	86936830	+	0	NA	intron (NM_001166693, intron 1 of 20)	intron (NM_001166693, intron 1 of 20)	1263	NM_001166693	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
183448	chr5	79109971	79110150	+	0	NA	Intergenic	Intergenic	-1749	NM_001713	635		NM_001713	ENSG00000145692	BHMT	BHMT1|HEL-S-61p	betaine--homocysteine S-methyltransferase	protein-coding
91111	chr17	3679401	3679600	+	0	NA	intron (NM_002561, intron 11 of 11)	intron (NM_002561, intron 11 of 11)	10688	NM_031298	83460		NM_031298	ENSG00000127774	EMC6	RAB5IFL|TMEM93	ER membrane protein complex subunit 6	protein-coding
95119	chr17	35001851	35002350	+	0	NA	exon (NM_002311, exon 18 of 20)	exon (NM_002311, exon 18 of 20)	21588	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
26528	chr10	21500051	21501100	+	0	NA	Intergenic	CpG	-3315	NR_160800	399726		NM_001010911	ENSG00000204682	MIR1915HG	C10orf114|CASC10|bA418C1.3	MIR1915 host gene	ncRNA
35426	chr11	1432221	1433480	+	0	NA	intron (NM_001256630, intron 1 of 19)	intron (NM_001256630, intron 1 of 19)	21698	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
170917	chr3	194138951	194139950	+	0	NA	TTS (NM_005524)	TTS (NM_005524)	3302	NM_005524	3280		NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
192862	chr6	27235251	27235680	+	0	NA	Intergenic	Intergenic	-12236	NM_005865	10279		NM_005865	ENSG00000112812	PRSS16	TSSP	serine protease 16	protein-coding
73958	chr15	51767921	51768230	+	0	NA	intron (NM_014548, intron 2 of 9)	intron (NM_014548, intron 2 of 9)	16478	NM_014548	29767		NM_014548	ENSG00000128872	TMOD2	N-TMOD|NTMOD	tropomodulin 2	protein-coding
143546	chr20	31586521	31586780	+	0	NA	Intergenic	MIR3|SINE|MIR	-13387	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
61699	chr13	74061771	74064030	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	71029	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
226875	chr9	78158451	78158550	+	0	NA	Intergenic	L1ME1|LINE|L1	-77575	NM_001098802	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
65691	chr14	52734521	52734780	+	0	NA	intron (NM_001130701, intron 2 of 11)	intron (NM_001130701, intron 2 of 11)	4484	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
91818	chr17	7112021	7112480	+	0	NA	intron (NM_080913, intron 2 of 8)	L1MEc|LINE|L1	2060	NM_080914	433		NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
80566	chr16	2846251	2847140	+	0	NA	Intergenic	MER4B|LTR|ERV1	-3944	NR_026864	124221		NM_178453	ENSG00000291300	PRSS30P	Disp|TMPRSS8|TMPRSS8P	serine protease 30, pseudogene	pseudo
131230	chr2	95345521	95346880	+	0	NA	promoter-TSS (NM_001034914)	promoter-TSS (NM_001034914)	-458	NM_001034914	30818		NM_013434	ENSG00000115041	KCNIP3	CSEN|DREAM|KCHIP3	potassium voltage-gated channel interacting protein 3	protein-coding
127470	chr2	42222671	42223230	+	0	NA	intron (NM_019063, intron 1 of 22)	AluY|SINE|Alu	-52719	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226340	chr9	69475721	69476180	+	0	NA	intron (NM_001163, intron 3 of 12)	intron (NM_001163, intron 3 of 12)	146625	NM_004816	9413		NM_004816	ENSG00000135063	ENTREP1	C9orf61|ENTREP|FAM189A2|X123	endosomal transmembrane epsin interactor 1	protein-coding
54838	chr12	94990321	94990780	+	0	NA	intron (NM_001258338, intron 2 of 2)	AluJr|SINE|Alu	13147	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
84773	chr16	30992921	30993380	+	0	NA	exon (NM_052874, exon 9 of 10)	exon (NM_052874, exon 9 of 10)	7943	NM_001142778	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
194420	chr6	33079151	33079800	+	0	NA	intron (NM_002121, intron 1 of 5).5	intron (NM_002121, intron 1 of 5).5	1273	NM_001242524	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
64224	chr14	23071121	23072180	+	0	NA	promoter-TSS (NM_001164816)	promoter-TSS (NM_001164816)	-81	NM_001164816	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
181469	chr5	42423271	42424030	+	0	NA	promoter-TSS (NM_001242399)	promoter-TSS (NM_001242399)	211	NM_000163	2690		NM_000163	ENSG00000112964	GHR	GHBP|GHIP	growth hormone receptor	protein-coding
137880	chr2	200841751	200842650	+	0	NA	Intergenic	AluY|SINE|Alu	22361	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
123514	chr19	54217401	54217600	+	0	NA	intron (NM_001081450, intron 11 of 12).2	intron (NM_001081450, intron 11 of 12).2	5507	NR_135494	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
138314	chr2	203744651	203744950	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	38161	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
201313	chr6	144361371	144361780	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	-44080	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
236485	chrX	71652351	71653030	+	0	NA	Intergenic	Intergenic	14178	NR_136576	100129291		NR_136576	ENSG00000237265	LOC100129291	-	chromosome X open reading frame 49 pseudogene	pseudo
22511	chr1	221793401	221793900	+	0	NA	Intergenic	Intergenic	47016	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
86348	chr16	66515871	66516030	+	0	NA	intron (NM_001271935, intron 6 of 7)	intron (NM_001271935, intron 6 of 7)	34172	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
155189	chr22	37804621	37805700	+	0	NA	promoter-TSS (NM_005318)	promoter-TSS (NM_005318)	-69	NM_005318	3005		NM_005318	ENSG00000189060	H1-0	H1.0|H10|H1F0|H1FV	H1.0 linker histone	protein-coding
58208	chr12	126774321	126774580	+	0	NA	Intergenic	Intergenic	-2188	NR_033878	387895		NR_033878		LINC00944	DMDRMR	long intergenic non-protein coding RNA 944	ncRNA
2958	chr1	11913651	11914250	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	5796	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
153829	chr22	29879871	29880180	+	0	NA	Intergenic	Intergenic	-3144	NM_153050	8897		NM_021090	ENSG00000100330	MTMR3	FYVE-DSP1|ZFYVE10	myotubularin related protein 3	protein-coding
45444	chr11	118440601	118441050	+	0	NA	intron (NM_001197104, intron 1 of 35)	intron (NM_001197104, intron 1 of 35)	4333	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
54131	chr12	76522551	76522850	+	0	NA	intron (NM_001003712, intron 1 of 22)	MSTB2|LTR|ERVL-MaLR	37071	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
134631	chr2	144421371	144421530	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-88381	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
214360	chr7	149604151	149604450	+	0	NA	intron (NR_027788, intron 3 of 7)	MER4A1|LTR|ERV1	20490	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
34166	chr10	128078121	128078980	+	0	NA	intron (NM_001323354, intron 18 of 19)	intron (NM_001323354, intron 18 of 19)	-16125	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
43925	chr11	90251771	90251930	+	0	NA	intron (NR_104190, intron 1 of 6)	MER51E|LTR|ERV1	618	NR_104190	101929222		NR_104190	ENSG00000261645	DISC1FP1	Boymaw	DISC1 fusion partner 1	ncRNA
208383	chr7	66672851	66673750	+	0	NA	intron (NM_001367722, intron 1 of 7)	intron (NM_001367722, intron 1 of 7)	-8866	NM_001367740	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
236618	chrX	74492971	74493230	+	0	NA	intron (NM_006517, intron 1 of 5)	intron (NM_006517, intron 1 of 5)	71607	NM_006517	6567		NM_006517	ENSG00000147100	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16 member 2	protein-coding
131384	chr2	96253621	96253880	+	0	NA	3' UTR (NM_001193304, exon 4 of 4)	3' UTR (NM_001193304, exon 4 of 4)	12247	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
169841	chr3	177181071	177181430	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluSz|SINE|Alu	15228	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
103678	chr17	78796051	78796780	+	0	NA	non-coding (NR_169584, exon 22 of 23)	non-coding (NR_169584, exon 22 of 23)	-14073	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
205308	chr7	12146901	12147180	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-64254	NM_018374	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
9016	chr1	44728201	44728430	+	0	NA	Intergenic	AluSx1|SINE|Alu	2853	NR_002755	26830		NR_002755	ENSG00000200169	RNU5D-1	RNU5D|U5DL|U5DS	RNA, U5D small nuclear 1	snRNA
146336	chr20	49236471	49236830	+	0	NA	intron (NM_017895, intron 14 of 20)	MIR|SINE|MIR	17234	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
145864	chr20	45929801	45930680	+	0	NA	Intergenic	AluJb|SINE|Alu	-4443	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
16531	chr1	154945471	154945830	+	0	NA	exon (NM_020524, exon 10 of 11)	exon (NM_020524, exon 10 of 11)	-2992	NM_001323012	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
210606	chr7	100432551	100432650	+	0	NA	intron (NM_019606, intron 1 of 3)	intron (NM_019606, intron 1 of 3)	2769	NM_019606	56257		NM_019606	ENSG00000146834	MEPCE	BCDIN3	methylphosphate capping enzyme	protein-coding
201019	chr6	141467871	141468030	+	0	NA	Intergenic	LTR25-int|LTR|ERV1	-665209	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
112783	chr19	7475451	7475950	+	0	NA	Intergenic	Intergenic	13335	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
131017	chr2	88012521	88013350	+	0	NA	Intergenic	Intergenic	-27145	NM_001024457	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
223530	chr8	144115871	144116500	+	0	NA	exon (NM_001316309, exon 24 of 24)	exon (NM_001316309, exon 24 of 24)	8446	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
238330	chrX	149534501	149534700	+	0	NA	intron (NR_027455, intron 5 of 9)	HERV16-int|LTR|ERVL	5152	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
118661	chr19	37370401	37371880	+	0	NA	promoter-TSS (NM_032453)	promoter-TSS (NM_032453)	41	NM_032453	84503		NM_032453	ENSG00000189164	ZNF527	-	zinc finger protein 527	protein-coding
110100	chr19	1545071	1545230	+	0	NA	Intergenic	AluY|SINE|Alu	21073	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
132552	chr2	106193401	106195130	+	0	NA	promoter-TSS (NM_025076)	promoter-TSS (NM_025076)	36	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
103351	chr17	78106871	78107180	+	0	NA	TTS (NM_001127198)	TTS (NM_001127198)	21730	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
3848	chr1	16919701	16920300	+	0	NA	Intergenic	AluSz|SINE|Alu	-1931	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
189215	chr5	171442101	171442300	+	0	NA	intron (NM_003862, intron 3 of 4)	intron (NM_003862, intron 3 of 4)	22553	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
89182	chr16	88560421	88561130	+	0	NA	intron (NR_146877, intron 2 of 2)	intron (NR_146877, intron 2 of 2)	1208	NR_146877	400555		NM_001001682		ZC3H18-AS1	C16orf85|LINC00859	ZC3H18 antisense RNA 1 (head to head)	ncRNA
232261	chr9	134411351	134412180	+	0	NA	intron (NM_001291921, intron 3 of 8)	intron (NM_001291921, intron 3 of 8)	5205	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
8439	chr1	40662801	40663000	+	0	NA	intron (NM_014747, intron 1 of 7)	MIRb|SINE|MIR	2782	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
98601	chr17	47746951	47747050	+	0	NA	TTS (NM_013351)	TTS (NM_013351)	13764	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
211503	chr7	105261751	105262050	+	0	NA	intron (NM_001350741, intron 2 of 16)	L2|LINE|L2	7177	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
48999	chr12	13397071	13397330	+	0	NA	Intergenic	L1PA3|LINE|L1	-20455	NR_036555	283422		NM_182558	ENSG00000180861	LINC01559	C12orf36	long intergenic non-protein coding RNA 1559	ncRNA
210956	chr7	101386771	101387130	+	0	NA	intron (NM_133457, intron 1 of 12)	intron (NM_133457, intron 1 of 12)	24075	NM_001278563	136227		NM_133457	ENSG00000160963	COL26A1	EMI6|EMID2|EMU2|SH2B	collagen type XXVI alpha 1 chain	protein-coding
124492	chr19	58567571	58567930	+	0	NA	intron (NM_198055, intron 5 of 5)	HAL1|LINE|L1	5585	NM_001267033	7593		NM_003422	ENSG00000099326	MZF1	MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6	myeloid zinc finger 1	protein-coding
208089	chr7	56100171	56100330	+	0	NA	Intergenic	Intergenic	6226	NM_016139	51142		NM_016139	ENSG00000106153	CHCHD2	C7orf17|MIX17B|MNRR1|NS2TP|PARK22	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding
138087	chr2	202212021	202212330	+	0	NA	intron (NR_163943, intron 3 of 5)	AluSx1|SINE|Alu	26422	NM_003352	7341		NM_003352	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin like modifier 1	protein-coding
128964	chr2	64643621	64644000	+	0	NA	intron (NM_014755, intron 1 of 1)	AluY|SINE|Alu	10103	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
4997	chr1	24351121	24351680	+	0	NA	intron (NM_198174, intron 15 of 15)	intron (NM_198174, intron 15 of 15)	28360	NM_021180	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
107833	chr18	54224201	54225250	+	0	NA	promoter-TSS (NM_015832)	promoter-TSS (NM_015832)	-56	NM_003927	8932		NM_003927	ENSG00000134046	MBD2	DMTase|NY-CO-41	methyl-CpG binding domain protein 2	protein-coding
7144	chr1	32211571	32211730	+	0	NA	intron (NM_001099434, intron 2 of 8)	intron (NM_001099434, intron 2 of 8)	2556	NM_001099434	149069		NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
205971	chr7	26169071	26169730	+	0	NA	intron (NM_004289, intron 1 of 3)	LTR16A|LTR|ERVL	17202	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
77814	chr15	88620601	88621750	+	0	NA	promoter-TSS (NM_022767)	promoter-TSS (NM_022767)	-165	NM_022767	64782		NM_022767	ENSG00000181026	AEN	ISG20L1|pp12744	apoptosis enhancing nuclease	protein-coding
141599	chr2	241636371	241638280	+	0	NA	promoter-TSS (NM_015963)	promoter-TSS (NM_015963)	-167	NM_015963	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
33789	chr10	123138321	123138600	+	0	NA	3' UTR (NM_001105574, exon 2 of 2)	3' UTR (NM_001105574, exon 2 of 2)	2490	NM_001105574	340784		NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
43717	chr11	86044151	86044850	+	0	NA	intron (NM_001206947, intron 1 of 18)	LSU-rRNA_Hsa|rRNA|rRNA	24584	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
215518	chr7	158712221	158712700	+	0	NA	Intergenic	Intergenic	-7656	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
99135	chr17	49259801	49260980	+	0	NA	Intergenic	CpG	12147	NR_034161	124871		NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	ncRNA
42508	chr11	70271951	70272050	+	0	NA	intron (NM_177423, intron 1 of 25)	intron (NM_177423, intron 1 of 25)	1310	NM_003626	8500		NM_003626	ENSG00000131626	PPFIA1	LIP.1|LIP1|LIPRIN	PTPRF interacting protein alpha 1	protein-coding
67233	chr14	68960771	68960930	+	0	NA	intron (NM_001130004, intron 1 of 21)	AluJr|SINE|Alu	18452	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
104135	chr17	80374001	80374400	+	0	NA	intron (NM_001256071, intron 49 of 67)	intron (NM_001256071, intron 49 of 67)	-40967	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
82690	chr16	20675621	20676350	+	0	NA	intron (NR_134918, intron 3 of 10)	HERV15-int|LTR|ERV1	15271	NR_134918	116285		NM_052956	ENSG00000166743	ACSM1	BUCS1|MACS1	acyl-CoA synthetase medium chain family member 1	protein-coding
101283	chr17	66397471	66398180	+	0	NA	TTS (NR_110822)	TTS (NR_110822)	19029	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
77037	chr15	78759001	78759400	+	0	NA	TTS (NM_014272)	TTS (NM_014272)	7163	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
197659	chr6	85449931	85451080	+	0	NA	intron (NM_002526, intron 1 of 8)	CpG	422	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
179776	chr5	318801	319630	+	0	NA	intron (NR_165159, intron 3 of 13)	intron (NR_165159, intron 3 of 13)	-2499	NM_001377236	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
238284	chrX	149477371	149477600	+	0	NA	3' UTR (NM_000202, exon 9 of 9)	3' UTR (NM_000202, exon 9 of 9)	27821	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
70673	chr14	103083971	103084700	+	0	NA	5' UTR (NM_001330236, exon 1 of 4)	5' UTR (NM_001330236, exon 1 of 4)	125	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
66436	chr14	61531271	61531630	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	38744	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
178853	chr4	153950171	153950600	+	0	NA	Intergenic	Intergenic	-161302	NM_003013	6423		NM_003013	ENSG00000145423	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled related protein 2	protein-coding
17739	chr1	158975551	158975850	+	0	NA	intron (NM_152501, intron 8 of 8)	L2|LINE|L2	-24276	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
46843	chr11	133082601	133083100	+	0	NA	intron (NM_001012393, intron 1 of 7)	CpG	-139082	NM_001319105	4978		NM_002545	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule like	protein-coding
101912	chr17	74453621	74454980	+	0	NA	Intergenic	CpG	-12073	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
112684	chr19	7042401	7042930	+	0	NA	Intergenic	L1ME3A|LINE|L1	-2492	NM_001164419	653656		NM_001164419	ENSG00000205718	MBD3L4	-	methyl-CpG binding domain protein 3 like 4	protein-coding
11145	chr1	86753751	86753930	+	0	NA	Intergenic	Intergenic	49264	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
64712	chr14	34199621	34199880	+	0	NA	Intergenic	LFSINE_Vert|SINE|tRNA	-248676	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
82665	chr16	19557501	19557700	+	0	NA	intron (NR_158160, intron 1 of 28)	AluSz|SINE|Alu	1897	NM_001300743	57020		NM_020314	ENSG00000103544	VPS35L	C16orf62|EC97|RTSC3	VPS35 endosomal protein sorting factor like	protein-coding
17568	chr1	156819021	156819280	+	0	NA	intron (NM_001007792, intron 1 of 16)	AluSx|SINE|Alu	-2302	NM_001161441	9047		NM_003975	ENSG00000027869	SH2D2A	F2771|SCAP|TSAD|VRAP	SH2 domain containing 2A	protein-coding
29503	chr10	70601651	70602100	+	0	NA	intron (NM_001083116, intron 1 of 2)	intron (NM_001083116, intron 1 of 2)	866	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
231214	chr9	129956601	129957500	+	0	NA	intron (NM_001363755, intron 6 of 15)	AluSq|SINE|Alu	86139	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
166140	chr3	111546101	111546300	+	0	NA	intron (NR_134917, intron 2 of 14)	L2|LINE|L2	4003	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
108213	chr18	63157401	63158250	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	161944	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
197909	chr6	89373651	89373950	+	0	NA	intron (NM_021244, intron 5 of 6)	MIRb|SINE|MIR	-21078	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
199457	chr6	117618971	117619330	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-16639	NM_020399	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
139538	chr2	224638301	224638500	+	0	NA	Intergenic	Intergenic	-53003	NM_001257197	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
134709	chr2	144505451	144506530	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-13624	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
62030	chr13	87678551	87678650	+	0	NA	3' UTR (NM_015567, exon 2 of 2)	3' UTR (NM_015567, exon 2 of 2)	5376	NM_001384610	26050		NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	SLIT and NTRK like family member 5	protein-coding
167750	chr3	132352521	132352800	+	0	NA	intron (NM_001099, intron 8 of 9)	intron (NM_001099, intron 8 of 9)	35253	NM_001134194	55		NM_001099	ENSG00000014257	ACP3	5'-NT|ACP-3|ACPP|TM-PAP	acid phosphatase 3	protein-coding
204707	chr7	5530501	5532500	+	0	NA	promoter-TSS (NM_001101)	promoter-TSS (NM_001101)	-899	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
122981	chr19	50800401	50800800	+	0	NA	intron (NM_032712, intron 2 of 3)	AluY|SINE|Alu	-1065	NR_003067	692202		NR_003067	ENSG00000221241	SNORD88A	HBII-180A	small nucleolar RNA, C/D box 88A	snoRNA
108982	chr18	79682971	79683650	+	0	NA	intron (NM_001202504, intron 1 of 12)	intron (NM_001202504, intron 1 of 12)	1880	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
94558	chr17	29612451	29612550	+	0	NA	exon (NM_152345, exon 12 of 15)	exon (NM_152345, exon 12 of 15)	5617	NM_001351302	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
118805	chr19	38502671	38502850	+	0	NA	intron (NM_000540, intron 48 of 105)	(GGGGCA)n|Simple_repeat|Simple_repeat	69069	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
182574	chr5	65957501	65957900	+	0	NA	intron (NM_001253697, intron 1 of 25)	SVA_C|Retroposon|SVA	-12127	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
163934	chr3	52697271	52697630	+	0	NA	intron (NM_001278280, intron 5 of 10)	Charlie10a|DNA|hAT-Charlie	4714	NR_003057	692109		NR_003057	ENSG00000212452	SNORD69	HBII-210	small nucleolar RNA, C/D box 69	snoRNA
14411	chr1	144306221	144306680	+	0	NA	Intergenic	L2b|LINE|L2	-3909	NR_136328	101927429		NR_136328		KMT2CP1	-	lysine methyltransferase 2C pseudogene 1	pseudo
227503	chr9	91245321	91245780	+	0	NA	intron (NM_001351432, intron 7 of 10)	A-rich|Low_complexity|Low_complexity	116368	NM_001698	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
151321	chr21	45565971	45566130	+	0	NA	Intergenic	AluY|SINE|Alu	-3025	NM_001352511	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
32324	chr10	102224801	102225230	+	0	NA	Intergenic	Intergenic	-1284	NM_152310	83401		NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
126594	chr2	28770921	28771450	+	0	NA	intron (NM_206876, intron 2 of 8)	AluSq|SINE|Alu	19355	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
100914	chr17	64462421	64462680	+	0	NA	intron (NM_001085423, intron 5 of 9)	intron (NM_001085423, intron 5 of 9)	13435	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
75524	chr15	66502621	66503530	+	0	NA	promoter-TSS (NR_002442)	promoter-TSS (NR_002442)	-165	NR_002440	595097		NR_002440	ENSG00000199673	SNORD16	U16	small nucleolar RNA, C/D box 16	snoRNA
195595	chr6	37556871	37557230	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-1628	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
15006	chr1	148155001	148155200	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-2819	NM_001385471	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
132756	chr2	109791451	109792050	+	0	NA	intron (NM_001384362, intron 2 of 22).2	L1M4a2|LINE|L1	-1008	NM_032260	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
185251	chr5	123510651	123510950	+	0	NA	Intergenic	Intergenic	-1299	NM_001031812	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
18023	chr1	160572771	160572930	+	0	NA	intron (NM_003874, intron 1 of 6)	intron (NM_003874, intron 1 of 6)	6646	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
147824	chr20	62727221	62727480	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	18514	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
59441	chr13	25877621	25877880	+	0	NA	intron (NM_016529, intron 33 of 36)	intron (NM_016529, intron 33 of 36)	174266	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
179465	chr4	184460721	184461580	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	13400	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
74662	chr15	61753301	61753500	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	23482	NR_146448	100506530		NR_146448	ENSG00000259284	LINC02349	-	long intergenic non-protein coding RNA 2349	ncRNA
116829	chr19	18569321	18569600	+	0	NA	TTS (NM_024069)	TTS (NM_024069)	-2270	NM_001321017	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
230212	chr9	127832221	127832750	+	0	NA	intron (NM_001114753, intron 2 of 14)	MIR|SINE|MIR	14682	NM_001278138	2022		NM_000118	ENSG00000106991	ENG	END|HHT1|ORW1	endoglin	protein-coding
9610	chr1	52363321	52363580	+	0	NA	intron (NM_032449, intron 2 of 23)	L1MB3|LINE|L1	2755	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
73812	chr15	48862851	48863030	+	0	NA	intron (NM_203349, intron 6 of 11)	intron (NM_203349, intron 6 of 11)	-15194	NM_014335	23741		NM_014335	ENSG00000255302	EID1	C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21	EP300 interacting inhibitor of differentiation 1	protein-coding
91952	chr17	7355821	7356530	+	0	NA	exon (NM_198154, exon 5 of 7)	exon (NM_198154, exon 5 of 7)	1019	NM_001320436	339168		NM_198154	ENSG00000182896	TMEM95	UNQ9390	transmembrane protein 95	protein-coding
205645	chr7	22727401	22727800	+	0	NA	promoter-TSS (NR_131935)	promoter-TSS (NR_131935)	20	NR_131935	541472		NR_131935	ENSG00000179428	IL6-AS1	-	IL6 antisense RNA 1	ncRNA
13600	chr1	116372351	116374500	+	0	NA	promoter-TSS (NM_001160233)	promoter-TSS (NM_001160233)	181	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
103800	chr17	79079601	79079800	+	0	NA	intron (NM_001042573, intron 4 of 13)	intron (NM_001042573, intron 4 of 13)	4876	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
24758	chr1	248829751	248829930	+	0	NA	Intergenic	SVA_B|Retroposon|SVA	3463	NR_036070	100422879		NR_036070	ENSG00000264500	MIR3124	mir-3124	microRNA 3124	ncRNA
230983	chr9	129484071	129484750	+	0	NA	Intergenic	Intergenic	-4250	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
233698	chrX	1214401	1214600	+	0	NA	Intergenic	AluSx|SINE|Alu	-1777	NM_001012288	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
141320	chr2	240459501	240460150	+	0	NA	intron (NM_002081, intron 2 of 8)	intron (NM_002081, intron 2 of 8)	-3125	NR_161169	100130449		NR_024014	ENSG00000218416	GPC1-AS1	-	GPC1 antisense RNA 1	ncRNA
99703	chr17	50860201	50860530	+	0	NA	Intergenic	AluSx|SINE|Alu	5989	NM_001243885	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
129946	chr2	73896521	73897350	+	0	NA	intron (NM_001199893, intron 1 of 7)	intron (NM_001199893, intron 1 of 7)	3927	NM_001615	72		NM_001615	ENSG00000163017	ACTG2	ACT|ACTA3|ACTE|ACTL3|ACTSG|MMIHS5|VSCM|VSCM1	actin gamma 2, smooth muscle	protein-coding
174352	chr4	38752371	38752730	+	0	NA	Intergenic	Intergenic	30440	NM_030956	81793		NM_030956	ENSG00000174123	TLR10	CD290	toll like receptor 10	protein-coding
229196	chr9	114685751	114686250	+	0	NA	Intergenic	L1MD2|LINE|L1	-3808	NM_001371884	100505478		NM_001199233	ENSG00000230601	TEX48	-	testis expressed 48	protein-coding
53998	chr12	75390731	75391900	+	0	NA	promoter-TSS (NM_001355031)	promoter-TSS (NM_001355031)	226	NR_072995	144321		NM_152436	ENSG00000180481	GLIPR1L2	-	GLIPR1 like 2	protein-coding
162507	chr3	48582651	48583180	+	0	NA	intron (NM_000094, intron 44 of 118)	intron (NM_000094, intron 44 of 118)	-3938	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
64516	chr14	24398801	24399780	+	0	NA	exon (NM_025081, exon 2 of 9)	exon (NM_025081, exon 2 of 9)	287	NM_025081	57523		NM_025081	ENSG00000205978	NYNRIN	CGIN1|KIAA1305	NYN domain and retroviral integrase containing	protein-coding
129690	chr2	70551271	70551730	+	0	NA	intron (NM_001099691, intron 1 of 5)	intron (NM_001099691, intron 1 of 5)	1946	NM_001308159	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
12745	chr1	109601401	109601600	+	0	NA	Intergenic	AluSx|SINE|Alu	2607	NR_029583	406974		NR_029583	ENSG00000284443	MIR197	MIRN197|miR-197|miRNA197	microRNA 197	ncRNA
179572	chr4	185224721	185225080	+	0	NA	intron (NM_001378032, intron 1 of 19)	HAL1M8|LINE|L1	15343	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
206046	chr7	27146721	27147000	+	0	NA	promoter-TSS (NR_038831)	promoter-TSS (NR_038831)	-303	NR_038831	100133311		NR_038831	ENSG00000254369	HOXA-AS3	HOXA6as	HOXA cluster antisense RNA 3	ncRNA
169368	chr3	160429221	160429480	+	0	NA	intron (NM_005496, intron 17 of 22)	AluJb|SINE|Alu	20436	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
1825	chr1	6244801	6245680	+	0	NA	exon (NM_001024598, exon 4 of 4)	exon (NM_001024598, exon 4 of 4)	1061	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
120263	chr19	42563371	42563650	+	0	NA	intron (NR_073180, intron 2 of 2)	intron (NR_073180, intron 2 of 2)	31414	NM_001816	1088		NM_001816	ENSG00000124469	CEACAM8	CD66b|CD67|CGM6|NCA-95	CEA cell adhesion molecule 8	protein-coding
149914	chr21	36150001	36150800	+	0	NA	intron (NR_038892, intron 1 of 3)	intron (NR_038892, intron 1 of 3)	5908	NR_038893	100506428		NR_038892	ENSG00000236830	CBR3-AS1	PlncRNA-1|PlncRNA1	CBR3 antisense RNA 1	ncRNA
164203	chr3	56869251	56869630	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	46996	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
35847	chr11	2312751	2313050	+	0	NA	intron (NM_139022, intron 4 of 9)	L2c|LINE|L2	-9760	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
21956	chr1	208086351	208087100	+	0	NA	intron (NM_025179, intron 9 of 31)	(ACTTTC)n|Simple_repeat|Simple_repeat	127734	NR_167983	105372883		NR_167982		LINC02767	-	long intergenic non-protein coding RNA 2767	ncRNA
63453	chr13	114123471	114124030	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	8873	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
81487	chr16	8939801	8940400	+	0	NA	intron (NM_003470, intron 1 of 30)	AluSc8|SINE|Alu	-3461	NM_001286457	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
65399	chr14	50791921	50793100	+	0	NA	intron (NM_020921, intron 5 of 30)	intron (NM_020921, intron 5 of 30)	-29287	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
61391	chr13	51534271	51534730	+	0	NA	Intergenic	Intergenic	-18089	NR_039852	100616423		NR_039852	ENSG00000266611	MIR4703	-	microRNA 4703	ncRNA
42346	chr11	68509671	68509830	+	0	NA	intron (NR_147971, intron 2 of 24)	AluSq2|SINE|Alu	48998	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
204882	chr7	6007251	6007730	+	0	NA	intron (NR_136154, intron 1 of 14)	intron (NR_136154, intron 1 of 14)	1559	NM_001322012	5395		NM_000535	ENSG00000122512	PMS2	HNPCC4|LYNCH4|MLH4|MMRCS4|PMS-2|PMS2CL|PMSL2	PMS1 homolog 2, mismatch repair system component	protein-coding
16777	chr1	155504021	155504500	+	0	NA	intron (NM_018489, intron 2 of 27)	intron (NM_018489, intron 2 of 27)	-57782	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
190536	chr5	180669851	180670760	+	0	NA	Intergenic	(GTGTGT)n|Simple_repeat|Simple_repeat	-13791	NR_146728	105377765		NR_146728		LINC02222	-	long intergenic non-protein coding RNA 2222	ncRNA
40794	chr11	64897011	64897300	+	0	NA	intron (NM_015104, intron 37 of 40)	AluSx|SINE|Alu	1282	NR_106808	102466192		NR_106808	ENSG00000274986	MIR6750	hsa-mir-6750	microRNA 6750	ncRNA
214905	chr7	151447151	151447450	+	0	NA	Intergenic	Intergenic	-6487	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
216844	chr8	22601251	22601600	+	0	NA	intron (NM_001198827, intron 2 of 5)	intron (NM_001198827, intron 2 of 5)	1824	NM_001198827	541565		NM_173686	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
229168	chr9	114513351	114513450	+	0	NA	Intergenic	L2c|LINE|L2	-7927	NM_015404	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
136226	chr2	174591771	174592280	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	5779	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
92711	chr17	14194971	14195330	+	0	NA	intron (NM_001303, intron 6 of 6)	intron (NM_001303, intron 6 of 6)	41712	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
61856	chr13	76995101	76995300	+	0	NA	exon (NM_001366624, exon 2 of 5)	exon (NM_001366624, exon 2 of 5)	3119	NM_006493	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
235141	chrX	41094971	41095430	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	9755	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
86506	chr16	67062571	67062930	+	0	NA	intron (NM_001368708, intron 3 of 4)	AluSx|SINE|Alu	33601	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
190811	chr6	1390121	1390950	+	0	NA	promoter-TSS (NR_106778)	promoter-TSS (NR_106778)	-124	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
76079	chr15	72480671	72480930	+	0	NA	intron (NM_005744, intron 1 of 13)	AluSp|SINE|Alu	6470	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
8295	chr1	40045651	40046000	+	0	NA	intron (NM_001350484, intron 2 of 13)	AluSz|SINE|Alu	4799	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
191633	chr6	13229471	13230030	+	0	NA	intron (NM_030948, intron 9 of 14)	intron (NM_030948, intron 9 of 14)	53692	NR_134859	100130357		NM_001242698	ENSG00000215022	LOC100130357	-	uncharacterized LOC100130357	ncRNA
169396	chr3	160563121	160563480	+	0	NA	intron (NM_002268, intron 1 of 16)	L1MB8|LINE|L1	2271	NM_002268	3840		NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
32968	chr10	110495271	110495430	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2557	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
96183	chr17	39733021	39733280	+	0	NA	Intergenic	AluJb|SINE|Alu	-2587	NM_001330206	84299		NM_032339	ENSG00000141741	MIEN1	C17orf37|C35|ORB3|RDX12|XTP4	migration and invasion enhancer 1	protein-coding
214655	chr7	150875851	150876150	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	23483	NM_001091	26		NM_001091	ENSG00000002726	AOC1	ABP|ABP1|DAO|DAO1|KAO|KDAO	amine oxidase copper containing 1	protein-coding
47227	chr12	948401	950530	+	0	NA	intron (NR_123713, intron 1 of 13)	CpG	229	NM_001297422	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
80762	chr16	3167151	3167480	+	0	NA	Intergenic	Intergenic	-20889	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
199622	chr6	119463101	119463680	+	0	NA	intron (NR_046100, intron 3 of 5)	MIRc|SINE|MIR	27912	NR_046100	285762		NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
6935	chr1	31714301	31714800	+	0	NA	Intergenic	CpG	-10533	NM_001856	1307		NM_001856	ENSG00000084636	COL16A1	447AA|FP1572	collagen type XVI alpha 1 chain	protein-coding
111470	chr19	3946251	3946750	+	0	NA	Intergenic	MIR|SINE|MIR	13029	NM_001375469	27231		NM_014446	ENSG00000077009	NMRK2	ITGB1BP3|MIBP|NRK2	nicotinamide riboside kinase 2	protein-coding
162886	chr3	49383271	49383850	+	0	NA	intron (NM_001313943, intron 1 of 5)	intron (NM_001313943, intron 1 of 5)	-24960	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
152673	chr22	21593551	21593850	+	0	NA	intron (NM_003347, intron 2 of 3)	intron (NM_003347, intron 2 of 3)	25986	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
77489	chr15	84598221	84599200	+	0	NA	Intergenic	Intergenic	-2299	NM_001007072	54993		NM_017894	ENSG00000176371	ZSCAN2	ZFP29|ZNF854	zinc finger and SCAN domain containing 2	protein-coding
9978	chr1	54959401	54959600	+	0	NA	Intergenic	MER51-int|LTR|ERV1	-21128	NM_182532	199964		NM_182532	ENSG00000143001	TMEM61	-	transmembrane protein 61	protein-coding
143742	chr20	32361421	32362650	+	0	NA	intron (NM_001363734, intron 1 of 10)	AluSx|SINE|Alu	2970	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
43209	chr11	75427221	75427480	+	0	NA	intron (NM_001039548, intron 2 of 5)	intron (NM_001039548, intron 2 of 5)	3279	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
130382	chr2	85308151	85308480	+	0	NA	intron (NM_031283, intron 11 of 11)	intron (NM_031283, intron 11 of 11)	19674	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
1527	chr1	3070251	3070850	+	0	NA	intron (NM_199454, intron 1 of 16)	CpG	1347	NM_199454	63976		NM_022114	ENSG00000142611	PRDM16	CMD1LL|KMT8F|LVNC8|MEL1|PFM13	PR/SET domain 16	protein-coding
4152	chr1	19353271	19353830	+	0	NA	intron (NM_001206540, intron 6 of 9)	intron (NM_001206540, intron 6 of 9)	41224	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
191734	chr6	13710601	13712750	+	0	NA	5' UTR (NM_005493, exon 1 of 14)	5' UTR (NM_005493, exon 1 of 14)	160	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
94445	chr17	29204451	29204630	+	0	NA	Intergenic	Intergenic	-24142	NM_203318	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
200930	chr6	139154901	139156030	+	0	NA	intron (NM_016217, intron 1 of 3)	Tigger3c|DNA|TcMar-Tigger	20385	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
96728	chr17	41665321	41666700	+	0	NA	Intergenic	CpG	-22875	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
224864	chr9	31210951	31211250	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	170390	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
171219	chr3	195768651	195768750	+	0	NA	intron (NM_018406, intron 7 of 24)	MIR|SINE|MIR	43229	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
163078	chr3	50082251	50083150	+	0	NA	Intergenic	AluSg4|SINE|Alu	-6219	NR_036627	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
98309	chr17	46243721	46244280	+	0	NA	Intergenic	Intergenic	-18633	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
79327	chr16	572571	573300	+	0	NA	intron (NM_004204, intron 1 of 10)	intron (NM_004204, intron 1 of 10)	2967	NM_004204	9091		NM_004204	ENSG00000007541	PIGQ	DEE77|EIEE77|GPI1|GPIBD19|MCAHS4|c407A10.1	phosphatidylinositol glycan anchor biosynthesis class Q	protein-coding
87920	chr16	79267751	79268200	+	0	NA	Intergenic	Intergenic	332762	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
152774	chr22	21791001	21791200	+	0	NA	intron (NM_138957, intron 4 of 7)	AluSc8|SINE|Alu	-55306	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
133160	chr2	112725851	112725950	+	0	NA	intron (NM_001350494, intron 13 of 16)	intron (NM_001350494, intron 13 of 16)	4414	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
141577	chr2	241595621	241595880	+	0	NA	intron (NM_001164356, intron 4 of 4)	intron (NM_001164356, intron 4 of 4)	21751	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
178289	chr4	145099771	145100150	+	0	NA	intron (NM_001040876, intron 1 of 17)	intron (NM_001040876, intron 1 of 17)	-1419	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
135991	chr2	172223171	172223730	+	0	NA	Intergenic	Intergenic	120444	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
233666	chrX	1056531	1056650	+	0	NA	Intergenic	AluSx1|SINE|Alu	156059	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
101859	chr17	74207971	74208330	+	0	NA	intron (NM_000999, intron 3 of 4)	intron (NM_000999, intron 3 of 4)	4472	NM_001035258	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
231857	chr9	132877951	132879600	+	0	NA	promoter-TSS (NM_001316897)	promoter-TSS (NM_001316897)	-123	NM_018956	11092		NM_018956	ENSG00000165698	SPACA9	C9orf9|Mast	sperm acrosome associated 9	protein-coding
143597	chr20	31697801	31698000	+	0	NA	intron (NR_134257, intron 1 of 2)	AluSz|SINE|Alu	-23607	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
56550	chr12	116915801	116916000	+	0	NA	intron (NM_153348, intron 1 of 10)	AluSx4|SINE|Alu	4944	NM_012174	26259		NM_012174	ENSG00000174989	FBXW8	FBW6|FBW8|FBX29|FBXO29|FBXW6	F-box and WD repeat domain containing 8	protein-coding
2362	chr1	9292401	9294030	+	0	NA	intron (NM_025106, intron 1 of 2)	CpG	321	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
160380	chr3	27926551	27927250	+	0	NA	Intergenic	Intergenic	-92764	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
99226	chr17	49618321	49618780	+	0	NA	intron (NM_001370730, intron 6 of 10)	intron (NM_001370730, intron 6 of 10)	8039	NM_001370732	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
151545	chr21	46537171	46537730	+	0	NA	exon (NM_001146115, exon 14 of 20)	exon (NM_001146115, exon 14 of 20)	67632	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
44539	chr11	108008571	108010280	+	0	NA	intron (NM_003478, intron 1 of 18)	CpG	527	NM_003478	8065		NM_003478	ENSG00000166266	CUL5	CUL-5|VACM-1|VACM1	cullin 5	protein-coding
79129	chr16	223771	224030	+	0	NA	intron (NM_018032, intron 2 of 8)	AluSz|SINE|Alu	5549	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
123963	chr19	55405371	55406180	+	0	NA	intron (NM_014501, intron 2 of 3)	intron (NM_014501, intron 2 of 3)	2013	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
215740	chr8	1816251	1816350	+	0	NA	promoter-TSS (NR_030326)	promoter-TSS (NR_030326)	-931	NR_030326	693181		NR_030326	ENSG00000207826	MIR596	MIRN596|hsa-mir-596	microRNA 596	ncRNA
229072	chr9	114354371	114354530	+	0	NA	intron (NM_001317952, intron 13 of 20)	AluYk4|SINE|Alu	24581	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
72606	chr15	36883751	36883930	+	0	NA	intron (NR_024264, intron 1 of 6)	intron (NR_024264, intron 1 of 6)	2693	NR_024264	145845		NM_001101327		LOC145845	-	uncharacterized LOC145845	ncRNA
45483	chr11	118605901	118606500	+	0	NA	promoter-TSS (NM_015157)	promoter-TSS (NM_015157)	-236	NM_015157	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
44768	chr11	112254851	112254950	+	0	NA	intron (NM_001145024, intron 2 of 3)	(GT)n|Simple_repeat|Simple_repeat	-5365	NR_133566	100132686		NR_133566	ENSG00000268472	LOC100132686	-	uncharacterized LOC100132686	ncRNA
176297	chr4	87352571	87352950	+	0	NA	intron (NM_016245, intron 5 of 6)	L1HS|LINE|L1	-29878	NM_001136230	345275		NM_178135	ENSG00000170509	HSD17B13	FLDP|HMFN0376|NIIL497|SCDR9|SDR16C3	hydroxysteroid 17-beta dehydrogenase 13	protein-coding
209727	chr7	87151871	87153350	+	0	NA	promoter-TSS (NM_021145)	promoter-TSS (NM_021145)	56	NM_021145	9988		NM_021145	ENSG00000135164	DMTF1	DMP1|DMTF|MRUL|hDMP1	cyclin D binding myb like transcription factor 1	protein-coding
161098	chr3	38163071	38163680	+	0	NA	Intergenic	LTR39|LTR|ERV1	-2162	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
98107	chr17	45614171	45614330	+	0	NA	Intergenic	AluSz|SINE|Alu	-6079	NR_138259	147081		NM_152466	ENSG00000293460	LINC02210	C17orf69|CRHR1-IT1	long intergenic non-protein coding RNA 2210	ncRNA
139729	chr2	229782271	229782430	+	0	NA	intron (NM_001348327, intron 34 of 41)	intron (NM_001348327, intron 34 of 41)	-67795	NM_139072	92737		NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch like EGF repeat containing	protein-coding
231351	chr9	130368671	130368830	+	0	NA	intron (NM_001291815, intron 44 of 97)	THE1D|LTR|ERVL-MaLR	-75957	NM_000050	445		NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
157574	chr22	45975401	45975600	+	0	NA	intron (NM_058238, intron 1 of 3)	MIRc|SINE|MIR	1662	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
206079	chr7	27181721	27182550	+	0	NA	3' UTR (NM_005523, exon 2 of 2)	3' UTR (NM_005523, exon 2 of 2)	-1874	NR_037940	100534589		NR_037940		HOXA10-HOXA9	-	HOXA10-HOXA9 readthrough	ncRNA
136077	chr2	173146571	173146930	+	0	NA	intron (NM_133646, intron 2 of 11)	L1MB8|LINE|L1	70904	NM_016653	51776		NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
169431	chr3	161371701	161372680	+	0	NA	promoter-TSS (NM_001040100)	promoter-TSS (NM_001040100)	-107	NM_001040100	165679		NM_145035	ENSG00000196542	SPTSSB	ADMP|C3orf57|SSSPTB	serine palmitoyltransferase small subunit B	protein-coding
203017	chr6	163444001	163444300	+	0	NA	intron (NM_206854, intron 1 of 6)	intron (NM_206854, intron 1 of 6)	29432	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
65029	chr14	39169701	39171280	+	0	NA	promoter-TSS (NM_177452)	promoter-TSS (NM_177452)	-157	NM_177452	122553		NM_177452	ENSG00000182400	TRAPPC6B	NEDMEBA|TPC6	trafficking protein particle complex subunit 6B	protein-coding
61021	chr13	48152921	48153830	+	0	NA	Intergenic	HAL1|LINE|L1	-58234	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
133019	chr2	111745921	111746180	+	0	NA	Intergenic	Intergenic	25084	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
32094	chr10	101140771	101141350	+	0	NA	non-coding (NR_130724, exon 1 of 3)	non-coding (NR_130724, exon 1 of 3)	206	NR_130724	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
29222	chr10	69045441	69046500	+	0	NA	Intergenic	Intergenic	-41633	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
190317	chr5	179613401	179614180	+	0	NA	TTS (NM_001364236)	TTS (NM_001364236)	9611	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
51642	chr12	53009601	53009800	+	0	NA	intron (NM_001300821, intron 1 of 14)	intron (NM_001300821, intron 1 of 14)	3244	NM_001330654	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
160234	chr3	23958771	23959580	+	0	NA	intron (NR_110524, intron 3 of 8)	AluJb|SINE|Alu	-12613	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
163162	chr3	50164271	50164430	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	5331	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
129979	chr2	74000051	74000550	+	0	NA	intron (NM_001287491, intron 2 of 11)	intron (NM_001287491, intron 2 of 11)	-2392	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
183838	chr5	86880801	86881080	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	134122	NR_105017	100505878		NR_105017		LINC02059	-	long intergenic non-protein coding RNA 2059	ncRNA
236274	chrX	66035451	66035750	+	0	NA	intron (NM_001184830, intron 1 of 6)	intron (NM_001184830, intron 1 of 6)	4480	NM_007268	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
18393	chr1	161401401	161401880	+	0	NA	Intergenic	AluSx|SINE|Alu	-33764	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
16257	chr1	153971751	153973330	+	0	NA	intron (NR_045658, intron 3 of 8)	intron (NR_045658, intron 3 of 8)	4290	NM_001255981	148327		NM_130898	ENSG00000143578	CREB3L4	AIBZIP|ATCE1|CREB3|CREB4|JAL|hJAL	cAMP responsive element binding protein 3 like 4	protein-coding
113490	chr19	10081351	10081650	+	0	NA	Intergenic	AluY|SINE|Alu	-4817	NM_018381	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
153410	chr22	24844721	24845380	+	0	NA	intron (NM_133454, intron 3 of 24)	intron (NM_133454, intron 3 of 24)	38829	NM_133454	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
177003	chr4	105472821	105473500	+	0	NA	intron (NM_176866, intron 1 of 7)	intron (NM_176866, intron 1 of 7)	902	NM_176869	27068		NM_006903	ENSG00000138777	PPA2	HSPC124|SCFAI|SCFI|SID6-306	inorganic pyrophosphatase 2	protein-coding
103214	chr17	77481701	77481900	+	0	NA	intron (NM_001113495, intron 1 of 9)	intron (NM_001113495, intron 1 of 9)	6165	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
113761	chr19	10511371	10512050	+	0	NA	Intergenic	AluSg|SINE|Alu	5737	NM_030760	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
143411	chr20	29444821	29445750	+	0	NA	Intergenic	Intergenic	-3232	NR_134504	105379477		NR_134504		LOC105379477	-	uncharacterized LOC105379477	ncRNA
1575	chr1	3584921	3585180	+	0	NA	intron (NM_001409, intron 3 of 36)	intron (NM_001409, intron 3 of 36)	-24260	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
106972	chr18	31942401	31944280	+	0	NA	promoter-TSS (NM_014939)	promoter-TSS (NM_014939)	-212	NM_014939	22878		NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex subunit 8	protein-coding
41966	chr11	67354401	67355780	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-1494	NM_001256870	57804		NM_021173	ENSG00000175482	POLD4	POLDS|p12	DNA polymerase delta 4, accessory subunit	protein-coding
212378	chr7	127865251	127865630	+	0	NA	intron (NM_014390, intron 12 of 23)	intron (NM_014390, intron 12 of 23)	-132069	NR_027330	27099		NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
170610	chr3	186999121	186999380	+	0	NA	intron (NM_173216, intron 2 of 7)	MIRb|SINE|MIR	-22605	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
233912	chrX	1651801	1652680	+	0	NA	Intergenic	AluSx3|SINE|Alu	37107	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
117055	chr19	18961571	18962080	+	0	NA	Intergenic	Intergenic	-20608	NM_004838	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
188991	chr5	166978751	166979330	+	0	NA	Intergenic	(CG)n|Simple_repeat|Simple_repeat	-52670	NR_108020	102557615		NR_108020	ENSG00000254130	LINC01947	CTB-7E3.1	long intergenic non-protein coding RNA 1947	ncRNA
214532	chr7	150513801	150514000	+	0	NA	promoter-TSS (NM_153236)	promoter-TSS (NM_153236)	-972	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
127335	chr2	39105971	39106130	+	0	NA	intron (NM_001382394, intron 1 of 22)	AluJb|SINE|Alu	15001	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
197866	chr6	89084701	89085250	+	0	NA	3' UTR (NM_006813, exon 2 of 2)	3' UTR (NM_006813, exon 2 of 2)	4224	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
71404	chr14	105531851	105532250	+	0	NA	non-coding (NR_135205, exon 1 of 2)	non-coding (NR_135205, exon 1 of 2)	195	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
194819	chr6	34272571	34272880	+	0	NA	Intergenic	Intergenic	-23617	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
173854	chr4	22607371	22607730	+	0	NA	Intergenic	LTR84b|LTR|ERVL	-85364	NM_020973	57733		NM_020973	ENSG00000249948	GBA3	CBG|CBGL1|GLUC|KLRP	glucosylceramidase beta 3 (gene/pseudogene)	protein-coding
233283	chr9	137311451	137311950	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-9429	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
93005	chr17	17198371	17198530	+	0	NA	Intergenic	Intergenic	7883	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
177309	chr4	109652871	109653100	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	50460	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
203230	chr6	168851571	168851930	+	0	NA	Intergenic	Intergenic	112632	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
187673	chr5	143219751	143219850	+	0	NA	intron (NR_146198, intron 22 of 22)	MER5B|DNA|hAT-Charlie	27300	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
221815	chr8	128014521	128014850	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	5787	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
65197	chr14	49641001	49641200	+	0	NA	Intergenic	MIR|SINE|MIR	-5856	NM_018139	55172		NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
1877	chr1	6428451	6428550	+	0	NA	intron (NM_031475, intron 2 of 12)	intron (NM_031475, intron 2 of 12)	1396	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
212651	chr7	129504271	129504630	+	0	NA	intron (NM_001195243, intron 1 of 1)	L2b|LINE|L2	1919	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
222604	chr8	141029501	141030100	+	0	NA	Intergenic	Intergenic	-27721	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
78388	chr15	91865551	91865650	+	0	NA	intron (NR_135775, intron 1 of 10)	MLT1C|LTR|ERVL-MaLR	11296	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
57973	chr12	123971401	123972100	+	0	NA	intron (NM_001304958, intron 1 of 5)	intron (NM_001304958, intron 1 of 5)	309	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
238562	chrX	153802401	153802600	+	0	NA	3' UTR (NM_001303515, exon 8 of 8)	3' UTR (NM_001303515, exon 8 of 8)	7832	NM_006280	6748		NM_006280	ENSG00000180879	SSR4	CDG1Y|TRAPD	signal sequence receptor subunit 4	protein-coding
223362	chr8	143873001	143874280	+	0	NA	intron (NM_031308, intron 1 of 1)	intron (NM_031308, intron 1 of 1)	4827	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
46884	chr11	134032251	134033050	+	0	NA	non-coding (NR_027276, exon 1 of 3)	non-coding (NR_027276, exon 1 of 3)	378	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
108778	chr18	77207121	77207930	+	0	NA	Intergenic	Intergenic	-42323	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
199400	chr6	116461821	116462650	+	0	NA	exon (NM_001010919, exon 2 of 3)	exon (NM_001010919, exon 2 of 3)	860	NM_001010919	441168		NM_001010919	ENSG00000188820	CALHM6	C6orf187|FAM26F|INAM|dJ93H18.5	calcium homeostasis modulator family member 6	protein-coding
50145	chr12	45733071	45733530	+	0	NA	intron (NM_152641, intron 3 of 20)	intron (NM_152641, intron 3 of 20)	3591	NM_001347839	196528		NM_152641	ENSG00000189079	ARID2	BAF200|CSS6|SMARCF3|ZIPZAP|p200	AT-rich interaction domain 2	protein-coding
167707	chr3	130892771	130895250	+	0	NA	promoter-TSS (NM_001001485)	promoter-TSS (NM_001001485)	-5	NM_001001485	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
204750	chr7	5587751	5588050	+	0	NA	Intergenic	AluSx|SINE|Alu	-4916	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
138251	chr2	203238001	203240250	+	0	NA	promoter-TSS (NM_001371698)	promoter-TSS (NM_001371698)	107	NM_001371701	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
83424	chr16	27240201	27240400	+	0	NA	intron (NM_145080, intron 2 of 7)	intron (NM_145080, intron 2 of 7)	-27905	NR_037184	400512		NR_037184	ENSG00000245888	NSMCE1-DT	-	NSMCE1 divergent transcript	ncRNA
13479	chr1	114583051	114583150	+	0	NA	3' UTR (NM_198459, exon 18 of 18)	3' UTR (NM_198459, exon 18 of 18)	-1485	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
4540	chr1	21963701	21964530	+	0	NA	Intergenic	Intergenic	-12907	NM_007352	23436		NM_007352	ENSG00000219073	CELA3B	CBPP|ELA3B	chymotrypsin like elastase 3B	protein-coding
53064	chr12	57713801	57714200	+	0	NA	intron (NM_001261420, intron 5 of 13)	AluJr|SINE|Alu	-12240	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
69293	chr14	93087771	93088130	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	20498	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
91617	chr17	5389621	5390080	+	0	NA	intron (NM_002532, intron 10 of 16)	intron (NM_002532, intron 10 of 16)	-29791	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
78512	chr15	92937671	92937830	+	0	NA	intron (NM_001042572, intron 6 of 12)	intron (NM_001042572, intron 6 of 12)	33351	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
228885	chr9	112717151	112718640	+	0	NA	intron (NR_138055, intron 1 of 4)	CpG	222	NR_138056	58493		NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
79097	chr16	185821	186130	+	0	NA	Intergenic	Intergenic	5516	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
222954	chr8	143167501	143168450	+	0	NA	Intergenic	Intergenic	-7321	NM_001130478	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
212901	chr7	130892301	130892700	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-14961	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
31348	chr10	93289071	93289380	+	0	NA	Intergenic	Intergenic	193109	NM_133337	26509		NM_013451	ENSG00000138119	MYOF	FER1L3|HAE7	myoferlin	protein-coding
85945	chr16	57185021	57187000	+	0	NA	promoter-TSS (NM_001354090)	promoter-TSS (NM_001354090)	29	NM_001354097	80011		NM_024946	ENSG00000172775	PSME3IP1	C16orf94|CDA018|CDA10|FAM192A|NIP30|PIP30	proteasome activator subunit 3 interacting protein 1	protein-coding
28080	chr10	43361551	43364100	+	0	NA	Intergenic	Intergenic	-8811	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
190084	chr5	177782671	177783450	+	0	NA	promoter-TSS (NR_146227)	promoter-TSS (NR_146227)	-140	NR_146227	285596		NM_173663	ENSG00000170074	FAM153A	NY-REN-7	family with sequence similarity 153 member A	protein-coding
96830	chr17	41963771	41963930	+	0	NA	intron (NM_031421, intron 11 of 11)	AluSx|SINE|Alu	-2945	NM_033133	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
19799	chr1	182599251	182599830	+	0	NA	3' UTR (NM_002928, exon 5 of 5)	3' UTR (NM_002928, exon 5 of 5)	4849	NM_002928	6004		NM_002928	ENSG00000143333	RGS16	A28-RGS14|A28-RGS14P|RGS-R	regulator of G protein signaling 16	protein-coding
66574	chr14	63454971	63455350	+	0	NA	intron (NM_006246, intron 2 of 13)	intron (NM_006246, intron 2 of 13)	53078	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
197898	chr6	89349901	89351100	+	0	NA	intron (NM_016021, intron 1 of 7)	intron (NM_016021, intron 1 of 7)	2222	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
203384	chr6	170551521	170552180	+	0	NA	intron (NM_002793, intron 1 of 5)	intron (NM_002793, intron 1 of 5)	1457	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
176122	chr4	83087571	83087930	+	0	NA	Intergenic	AluY|SINE|Alu	22139	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
231678	chr9	131693371	131693530	+	0	NA	intron (NM_001377935, intron 1 of 26)	LTR54|LTR|ERV1	16392	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
238475	chrX	153390151	153390350	+	0	NA	Intergenic	Intergenic	10446	NM_001351294	649238		NM_001351293	ENSG00000214897	PNMA6E	-	PNMA family member 6E	protein-coding
29714	chr10	72075251	72075880	+	0	NA	intron (NM_014767, intron 2 of 11)	intron (NM_014767, intron 2 of 11)	12986	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
68666	chr14	90266001	90266200	+	0	NA	intron (NM_002802, intron 7 of 10)	AluSz|SINE|Alu	8161	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
121583	chr19	47288301	47288700	+	0	NA	Intergenic	LTR101_Mam|LTR|ERVL	13615	NM_178511	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
137556	chr2	197237451	197238680	+	0	NA	intron (NM_153697, intron 1 of 9)	L2b|LINE|L2	40074	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
222703	chr8	141301521	141301900	+	0	NA	intron (NM_001286646, intron 1 of 8)	AluJb|SINE|Alu	6578	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
97195	chr17	42688101	42688500	+	0	NA	intron (NM_003632, intron 8 of 23)	intron (NM_003632, intron 8 of 23)	5769	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
120686	chr19	45155521	45155980	+	0	NA	intron (NM_198478, intron 3 of 3)	intron (NM_198478, intron 3 of 3)	4400	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
54637	chr12	92907801	92908650	+	0	NA	intron (NM_003566, intron 1 of 28)	L1MB2|LINE|L1	21070	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
151827	chr22	18415901	18416500	+	0	NA	Intergenic	AluSp|SINE|Alu	-5184	NR_165629	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
220180	chr8	95211321	95211580	+	0	NA	intron (NR_046232, intron 1 of 2)	L4_C_Mam|LINE|RTE-X	4924	NR_046232	619344		NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
29675	chr10	72042571	72042930	+	0	NA	Intergenic	Intergenic	45801	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
187774	chr5	145941801	145942100	+	0	NA	intron (NM_152550, intron 2 of 9)	intron (NM_152550, intron 2 of 9)	5372	NM_152550	153769		NM_152550	ENSG00000156463	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
31702	chr10	97645201	97645400	+	0	NA	intron (NM_018425, intron 1 of 8)	intron (NM_018425, intron 1 of 8)	4614	NM_018425	55361		NM_018425	ENSG00000155252	PI4K2A	NEDMSB|PI4KII|PIK42A	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
110157	chr19	1644301	1644700	+	0	NA	intron (NM_003200, intron 3 of 18)	intron (NM_003200, intron 3 of 18)	8115	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
161066	chr3	38076271	38076430	+	0	NA	intron (NM_001321153, intron 6 of 36)	LTR7|LTR|ERV1	37142	NM_007335	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
133313	chr2	113877801	113878000	+	0	NA	intron (NR_110174, intron 1 of 4)	intron (NR_110174, intron 1 of 4)	-12034	NR_102318	10096		NM_005721	ENSG00000115091	ACTR3	ARP3	actin related protein 3	protein-coding
128513	chr2	60555121	60556250	+	0	NA	Intergenic	Intergenic	-2031	NM_022893	53335		NM_018014	ENSG00000119866	BCL11A	CTIP1|DILOS|EVI9|HBFQTL5|SMARCM1|ZNF856	BCL11 transcription factor A	protein-coding
206373	chr7	30626901	30627300	+	0	NA	intron (NM_002047, intron 13 of 16)	intron (NM_002047, intron 13 of 16)	32222	NM_002047	2617		NM_002047	ENSG00000106105	GARS1	CMT2D|DSMAV|GARS|GlyRS|HMN5|HMN5A|HMND5|SMAD1|SMAJI	glycyl-tRNA synthetase 1	protein-coding
107443	chr18	46264271	46264630	+	0	NA	3' UTR (NM_001008239, exon 4 of 4)	3' UTR (NM_001008239, exon 4 of 4)	-69568	NM_152470	494470		NM_152470	ENSG00000141622	ARK2C	ARKL2|RNF111L2|RNF165|lncAMPC	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C	protein-coding
14150	chr1	121117611	121117830	+	0	NA	promoter-TSS (NR_027337)	promoter-TSS (NR_027337)	-428	NR_027337	337875		NR_027337	ENSG00000291123	H2BP1	HIST2H2BA	H2B histone pseudogene 1	pseudo
183467	chr5	79246501	79247050	+	0	NA	intron (NM_152405, intron 1 of 10)	AluSx1|SINE|Alu	10644	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
52809	chr12	56783571	56783730	+	0	NA	intron (NM_003725, intron 3 of 4)	SVA_D|Retroposon|SVA	20326	NM_003725	8630		NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid 17-beta dehydrogenase 6	protein-coding
36039	chr11	2926001	2926680	+	0	NA	Intergenic	Intergenic	3080	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
24278	chr1	236491871	236492230	+	0	NA	Intergenic	Intergenic	-26164	NM_201545	3964		NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
70505	chr14	102200601	102202180	+	0	NA	intron (NM_001242415, intron 3 of 3)	intron (NM_001242415, intron 3 of 3)	34036	NM_001353832	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
97160	chr17	42579671	42580250	+	0	NA	non-coding (NR_026697, exon 8 of 8)	non-coding (NR_026697, exon 8 of 8)	-2129	NR_045670	29893		NM_013290	ENSG00000131470	PSMC3IP	GT198|HOP2|HUMGT198A|ODG3|TBPIP	PSMC3 interacting protein	protein-coding
39953	chr11	62562421	62562880	+	0	NA	intron (NM_001404, intron 7 of 9)	AluSg|SINE|Alu	-2344	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
97408	chr17	43392621	43393030	+	0	NA	Intergenic	Intergenic	-3927	NR_027413	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
181745	chr5	50708151	50708450	+	0	NA	intron (NM_024615, intron 2 of 25)	HAL1|LINE|L1	40886	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
205720	chr7	23473251	23473350	+	0	NA	Intergenic	Intergenic	-2809	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
144140	chr20	34022221	34023280	+	0	NA	intron (NM_016732, intron 1 of 9)	MIR3|SINE|MIR	-26369	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
181174	chr5	39064851	39065350	+	0	NA	intron (NM_001285439, intron 2 of 38)	MSTA|LTR|ERVL-MaLR	9299	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
85815	chr16	56984351	56984930	+	0	NA	TTS (NM_001286085)	TTS (NM_001286085)	-4917	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
97694	chr17	44314071	44314230	+	0	NA	intron (NM_001144825, intron 4 of 10)	intron (NM_001144825, intron 4 of 10)	5549	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
84096	chr16	29624771	29625330	+	0	NA	Intergenic	AluJo|SINE|Alu	-11333	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
29174	chr10	68900471	68902230	+	0	NA	promoter-TSS (NM_024045)	promoter-TSS (NM_024045)	35	NM_024045	79009		NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
177530	chr4	118669221	118669500	+	0	NA	intron (NR_125930, intron 6 of 6)	intron (NR_125930, intron 6 of 6)	15981	NR_125930	101929741		NR_125930	ENSG00000281731	METTL14-DT	-	METTL14 divergent transcript	ncRNA
52269	chr12	54504401	54504600	+	0	NA	intron (NM_001184976, intron 3 of 30)	intron (NM_001184976, intron 3 of 30)	5722	NM_001184976	3071		NM_005337	ENSG00000123338	NCKAP1L	HEM1|IMD72	NCK associated protein 1 like	protein-coding
128207	chr2	53973801	53974000	+	0	NA	intron (NM_001320587, intron 2 of 5)	(TG)n|Simple_repeat|Simple_repeat	2787	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
160499	chr3	30625351	30625450	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	18799	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
64636	chr14	31206891	31209050	+	0	NA	promoter-TSS (NM_015382)	promoter-TSS (NM_015382)	-177	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
198100	chr6	90289971	90290430	+	0	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	6643	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
190661	chr5	181248801	181249280	+	0	NA	intron (NR_109909, intron 2 of 2)	intron (NR_109909, intron 2 of 2)	2499	NR_109909	101928649		NR_109909	ENSG00000233937	CTC-338M12.4	-	uncharacterized LOC101928649	ncRNA
38225	chr11	36422351	36422650	+	0	NA	intron (NM_001160167, intron 4 of 8)	intron (NM_001160167, intron 4 of 8)	21503	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
187145	chr5	140547271	140548450	+	0	NA	intron (NM_003732, intron 1 of 2)	CpG	198	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
132980	chr2	111492201	111492440	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	2841	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
78415	chr15	92100901	92101180	+	0	NA	intron (NM_013272, intron 3 of 9)	MLT1I|LTR|ERVL-MaLR	246736	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
219747	chr8	81076371	81076550	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	35608	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
154141	chr22	31247771	31248800	+	0	NA	promoter-TSS (NM_016733)	promoter-TSS (NM_016733)	-99	NM_016733	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
58667	chr12	132532951	132533530	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	27834	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
43520	chr11	81874501	81875280	+	0	NA	Intergenic	Intergenic	15946	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
186755	chr5	139319151	139319450	+	0	NA	intron (NM_199189, intron 11 of 17)	intron (NM_199189, intron 11 of 17)	-22532	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
209358	chr7	76279301	76279500	+	0	NA	intron (NM_001291831, intron 11 of 15)	intron (NM_001291831, intron 11 of 15)	-23273	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
224713	chr9	21455171	21455630	+	0	NA	non-coding (NR_027054, exon 4 of 4)	non-coding (NR_027054, exon 4 of 4)	14961	NM_024013	3439		NM_024013	ENSG00000197919	IFNA1	IFL|IFN|IFN-ALPHA|IFN-alphaD|IFNA13|IFNA@|leIF D	interferon alpha 1	protein-coding
108550	chr18	74597021	74598880	+	0	NA	promoter-TSS (NM_017757)	promoter-TSS (NM_017757)	80	NM_017757	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
106876	chr18	24359651	24360000	+	0	NA	intron (NM_080597, intron 4 of 27)	intron (NM_080597, intron 4 of 27)	37999	NM_080597	114876		NM_018030	ENSG00000141447	OSBPL1A	ORP-1|ORP1|OSBPL1B	oxysterol binding protein like 1A	protein-coding
228004	chr9	95516731	95517250	+	0	NA	promoter-TSS (NM_001083602)	promoter-TSS (NM_001083602)	-19	NM_001083602	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
214911	chr7	151460971	151461330	+	0	NA	Intergenic	Intergenic	-20337	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
58378	chr12	131826501	131826700	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-1793	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
77983	chr15	89412871	89413430	+	0	NA	intron (NR_160724, intron 2 of 2)	intron (NR_160724, intron 2 of 2)	12979	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
218051	chr8	38830271	38831010	+	0	NA	intron (NR_148051, intron 3 of 10)	intron (NR_148051, intron 3 of 10)	25190	NM_001352802	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
184843	chr5	111511071	111511330	+	0	NA	intron (NR_131754, intron 1 of 4)	intron (NR_131754, intron 1 of 4)	-1026	NR_040093	100505678		NR_040093	ENSG00000246859	STARD4-AS1	-	STARD4 antisense RNA 1	ncRNA
233816	chrX	1473721	1474230	+	0	NA	intron (NM_178129, intron 1 of 1)	(GATG)n|Simple_repeat|Simple_repeat	-20213	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
204578	chr7	5284901	5285550	+	0	NA	intron (NM_153247, intron 1 of 10)	(AGCCC)n|Simple_repeat|Simple_repeat	2282	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
161107	chr3	38178821	38179080	+	0	NA	intron (NM_005109, intron 1 of 17)	AluJr|SINE|Alu	13413	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
222260	chr8	133279871	133280430	+	0	NA	intron (NM_001258432, intron 1 of 13)	intron (NM_001258432, intron 1 of 13)	16540	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
134762	chr2	147045021	147045330	+	0	NA	Intergenic	Intergenic	458118	NR_026904	728773		NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
37740	chr11	31811151	31811530	+	0	NA	promoter-TSS (NM_001368892)	promoter-TSS (NM_001368892)	-18	NM_001368922	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
190805	chr6	1381801	1382880	+	0	NA	Intergenic	CpG	-7236	NM_001452	2295		NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
80996	chr16	4064721	4065580	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	51292	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
197962	chr6	89972501	89972700	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	78131	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
11683	chr1	91836421	91836680	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	49601	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
35652	chr11	1854801	1856380	+	0	NA	intron (NM_002339, intron 1 of 10)	intron (NM_002339, intron 1 of 10)	2506	NM_002339	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
50644	chr12	48753521	48754150	+	0	NA	intron (NM_001351125, intron 2 of 4)	AluSz|SINE|Alu	18202	NR_039850	100616262		NR_039850	ENSG00000264201	MIR4701	-	microRNA 4701	ncRNA
233531	chrX	222381	223400	+	0	NA	Intergenic	Intergenic	-53466	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228331	chr9	98775901	98776350	+	0	NA	intron (NM_173551, intron 8 of 14)	MIR3|SINE|MIR	20430	NM_173551	203286		NM_173551	ENSG00000165138	ANKS6	ANKRD14|NPHP16|PKDR1|SAMD6	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding
130154	chr2	75199471	75199830	+	0	NA	promoter-TSS (NM_015727)	promoter-TSS (NM_015727)	-130	NM_015727	6869		NM_001058	ENSG00000115353	TACR1	NK1R|NKIR|SPR|TAC1R	tachykinin receptor 1	protein-coding
116938	chr19	18844851	18844950	+	0	NA	intron (NM_001297549, intron 1 of 23)	intron (NM_001297549, intron 1 of 23)	12941	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
202332	chr6	157460901	157461650	+	0	NA	intron (NM_024630, intron 1 of 8)	intron (NM_024630, intron 1 of 8)	-67857	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
1811	chr1	6211651	6211950	+	0	NA	intron (NM_207396, intron 12 of 17)	intron (NM_207396, intron 12 of 17)	5681	NM_207396	388591		NM_173795	ENSG00000158286	RNF207	C1orf188	ring finger protein 207	protein-coding
224614	chr9	20504651	20505750	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	-2858	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
172366	chr4	1745921	1746680	+	0	NA	Intergenic	Intergenic	24779	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
180229	chr5	1545721	1545980	+	0	NA	Intergenic	Intergenic	-21890	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
936	chr1	1727401	1727850	+	0	NA	3' UTR (NM_182838, exon 6 of 6)	3' UTR (NM_182838, exon 6 of 6)	-3268	NM_001313982	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
147373	chr20	58414221	58414680	+	0	NA	intron (NM_001195677, intron 1 of 2)	SVA_F|Retroposon|SVA	25221	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
70402	chr14	101970321	101971150	+	0	NA	intron (NM_001376, intron 1 of 77)	AluSx|SINE|Alu	6162	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
164336	chr3	57983621	57984280	+	0	NA	Intergenic	Intergenic	-24472	NM_001164317	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
23859	chr1	234776771	234777300	+	0	NA	Intergenic	Intergenic	-16979	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
22339	chr1	214332851	214333350	+	0	NA	intron (NM_020197, intron 10 of 11)	intron (NM_020197, intron 10 of 11)	51941	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
239175	chrY	12479321	12479600	+	0	NA	Intergenic	L1ME3C|LINE|L1	-57870	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
55196	chr12	101616071	101616430	+	0	NA	intron (NM_206821, intron 2 of 28)	intron (NM_206821, intron 2 of 28)	21279	NM_002465	4604		NM_002465	ENSG00000196091	MYBPC1	CMYP16|LCCS4|MYBPCC|MYBPCS|MYOTREM|ssMyBP-C	myosin binding protein C1	protein-coding
113389	chr19	9144901	9145100	+	0	NA	intron (NM_001190791, intron 1 of 5)	L1MEd|LINE|L1	4603	NR_102435	57693		NM_020933	ENSG00000130803	ZNF317	-	zinc finger protein 317	protein-coding
179888	chr5	664251	664650	+	0	NA	3' UTR (NM_007030, exon 4 of 4)	3' UTR (NM_007030, exon 4 of 4)	28902	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
168131	chr3	138934471	138935030	+	0	NA	TTS (NR_121649)	TTS (NR_121649)	9270	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
17998	chr1	160538751	160539180	+	0	NA	Intergenic	Intergenic	-15710	NM_001184714	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
127881	chr2	46010801	46011150	+	0	NA	intron (NM_005400, intron 10 of 14)	intron (NM_005400, intron 10 of 14)	-286432	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
116074	chr19	17239721	17239980	+	0	NA	intron (NM_005234, intron 2 of 3)	intron (NM_005234, intron 2 of 3)	5492	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
221307	chr8	123029171	123029730	+	0	NA	intron (NM_001330601, intron 1 of 6)	intron (NM_001330601, intron 1 of 6)	-3678	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
69744	chr14	98934601	98934800	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	223087	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
192809	chr6	26613671	26614430	+	0	NA	Intergenic	CpG	17097	NM_013375	29777		NM_013375	ENSG00000146109	ABT1	Esf2|hABT1	activator of basal transcription 1	protein-coding
63959	chr14	22118701	22119330	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	313738	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
99018	chr17	48834171	48834330	+	0	NA	intron (NM_001261395, intron 1 of 11)	intron (NM_001261395, intron 1 of 11)	3215	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
71698	chr15	20247921	20248380	+	0	NA	Intergenic	L2a|LINE|L2	-34594	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
16319	chr1	154199021	154199680	+	0	NA	3' UTR (NM_001010979, exon 4 of 4)	3' UTR (NM_001010979, exon 4 of 4)	-5607	NR_030600	100126346		NR_030600	ENSG00000215938	MIR190B	MIRN190B|mir-190b	microRNA 190b	ncRNA
150176	chr21	39197751	39197850	+	0	NA	intron (NM_033656, intron 40 of 40)	Tigger3c|DNA|TcMar-Tigger	-14286	NM_203433	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
113083	chr19	8262601	8262800	+	0	NA	TTS (NM_024552)	TTS (NM_024552)	45658	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
180047	chr5	1073801	1074530	+	0	NA	intron (NM_006598, intron 16 of 23).2	intron (NM_006598, intron 16 of 23).2	-11191	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
182225	chr5	56862971	56863130	+	0	NA	intron (NM_005921, intron 3 of 19)	MER57D|LTR|ERV1	-46210	NM_001323022	133383		NM_153706	ENSG00000155542	SETD9	C5orf35	SET domain containing 9	protein-coding
172398	chr4	1784671	1785030	+	0	NA	Intergenic	Intergenic	-8443	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
118732	chr19	38265471	38265930	+	0	NA	intron (NM_001166103, intron 1 of 5)	intron (NM_001166103, intron 1 of 5)	1127	NM_001166103	10653		NM_021102	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	serine peptidase inhibitor, Kunitz type 2	protein-coding
89839	chr16	89586761	89587440	+	0	NA	exon (NM_014427, exon 11 of 17)	exon (NM_014427, exon 11 of 17)	11342	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
55358	chr12	104201101	104201600	+	0	NA	Intergenic	L1MA4|LINE|L1	-14429	NM_001093771	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
147079	chr20	53828771	53829430	+	0	NA	Intergenic	Intergenic	46609	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
237255	chrX	110246451	110246850	+	0	NA	intron (NM_001025580, intron 1 of 4)	L2c|LINE|L2	-21590	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
195407	chr6	36827321	36827830	+	0	NA	intron (NR_164866, intron 1 of 7)	intron (NR_164866, intron 1 of 7)	11869	NM_020939	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
224136	chr9	4743151	4743250	+	0	NA	Intergenic	Intergenic	-1157	NM_001199853	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
38672	chr11	46394521	46394780	+	0	NA	Intergenic	Intergenic	-2874	NM_000741	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
124630	chr2	1564321	1564780	+	0	NA	Intergenic	Intergenic	12620	NR_168373	102723730		NR_168373		LOC102723730	-	uncharacterized LOC102723730	ncRNA
7790	chr1	36240251	36240550	+	0	NA	intron (NM_001321471, intron 2 of 12)	MLT2B3|LTR|ERVL	15957	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
33299	chr10	114808901	114809750	+	0	NA	Intergenic	Intergenic	-12455	NM_020940	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
48738	chr12	10716701	10717130	+	0	NA	intron (NM_003651, intron 3 of 9)	intron (NM_003651, intron 3 of 9)	6408	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
209671	chr7	79912231	79912550	+	0	NA	Intergenic	LTR108e_Mam|LTR|ERVL	-222441	NM_002069	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
102933	chr17	76614271	76615100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-28825	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
26394	chr10	16996001	16996450	+	0	NA	intron (NM_001081, intron 28 of 66)	intron (NM_001081, intron 28 of 66)	133586	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
156555	chr22	41441371	41441730	+	0	NA	intron (NM_016272, intron 1 of 1)	AluSz6|SINE|Alu	5251	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
174184	chr4	36322721	36324000	+	0	NA	intron (NR_165630, intron 9 of 10)	intron (NR_165630, intron 9 of 10)	41744	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
43671	chr11	85760471	85760830	+	0	NA	intron (NM_032943, intron 1 of 18)	intron (NM_032943, intron 1 of 18)	-2581	NM_001162953	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
1160	chr1	2206871	2207030	+	0	NA	intron (NM_001146310, intron 1 of 7)	intron (NM_001146310, intron 1 of 7)	783	NM_001146310	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
158346	chr22	50457771	50457930	+	0	NA	intron (NM_002972, intron 28 of 40)	intron (NM_002972, intron 28 of 40)	17185	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
213219	chr7	133268351	133268650	+	0	NA	intron (NM_021807, intron 1 of 17)	intron (NM_021807, intron 1 of 17)	15422	NM_021807	60412		NM_021807	ENSG00000131558	EXOC4	SEC8|SEC8L1|Sec8p	exocyst complex component 4	protein-coding
162495	chr3	48569701	48570200	+	0	NA	intron (NM_000094, intron 99 of 118)	intron (NM_000094, intron 99 of 118)	-6169	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
216277	chr8	12515071	12515830	+	0	NA	intron (NR_040091, intron 5 of 6)	intron (NR_040091, intron 5 of 6)	78437	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
181402	chr5	40690271	40690530	+	0	NA	intron (NM_000958, intron 2 of 2)	intron (NM_000958, intron 2 of 2)	10485	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
57600	chr12	122457051	122457150	+	0	NA	Intergenic	AluJb|SINE|Alu	-34431	NM_198240	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
137471	chr2	197071451	197072180	+	0	NA	intron (NR_160034, intron 16 of 28)	L1MD|LINE|L1	-126176	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
236341	chrX	70016501	70016900	+	0	NA	intron (NM_001399, intron 2 of 7)	L1PB3|LINE|L1	-6157	NR_037494	100500887		NR_037494	ENSG00000211991	MIR676	hsa-mir-676|mir-676	microRNA 676	ncRNA
121231	chr19	46638101	46640600	+	0	NA	Intergenic	CpG	-4668	NM_033258	94235		NM_033258	ENSG00000167414	GNG8	HG3E	G protein subunit gamma 8	protein-coding
117423	chr19	19636371	19636980	+	0	NA	intron (NM_016573, intron 13 of 20)	intron (NM_016573, intron 13 of 20)	6982	NM_001288998	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
30704	chr10	80539251	80539750	+	0	NA	intron (NM_207372, intron 1 of 6)	L2c|LINE|L2	-1319	NM_001145719	387694		NM_207372	ENSG00000178217	SH2D4B	-	SH2 domain containing 4B	protein-coding
48569	chr12	10285101	10285330	+	0	NA	intron (NM_001351060, intron 2 of 8)	intron (NM_001351060, intron 2 of 8)	-19231	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
142177	chr20	2869201	2869600	+	0	NA	intron (NM_002836, intron 5 of 27)	L1ME2z|LINE|L1	-4081	NM_001385307	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
156632	chr22	41605871	41606030	+	0	NA	intron (NM_015704, intron 3 of 5)	L2b|LINE|L2	15093	NM_015704	27351		NM_015704	ENSG00000100418	DESI1	D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|POST|PPPDE2	desumoylating isopeptidase 1	protein-coding
39459	chr11	60976471	60976630	+	0	NA	intron (NM_006725, intron 1 of 12)	MamRep1151|LTR?|LTR?	4870	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
76960	chr15	78129891	78130350	+	0	NA	intron (NM_001301224, intron 1 of 4)	intron (NM_001301224, intron 1 of 4)	1325	NM_006383	10518		NM_006383	ENSG00000136425	CIB2	DFNB48|KIP2|USH1J	calcium and integrin binding family member 2	protein-coding
197134	chr6	57959921	57960180	+	0	NA	intron (NR_132996, intron 1 of 3)	AluSz|SINE|Alu	1396	NR_125727	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
145278	chr20	41005901	41006330	+	0	NA	intron (NR_145525, intron 2 of 2)	MIRb|SINE|MIR	-22707	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
129842	chr2	72892521	72893100	+	0	NA	TTS (NM_003124)	TTS (NM_003124)	5402	NM_003124	6697		NM_003124	ENSG00000116096	SPR	SDR38C1	sepiapterin reductase	protein-coding
178504	chr4	150818401	150818850	+	0	NA	intron (NM_001367550, intron 30 of 56)	intron (NM_001367550, intron 30 of 56)	196642	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
24546	chr1	244857001	244857580	+	0	NA	intron (NM_031844, intron 8 of 13)	AluSx1|SINE|Alu	-3073	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
21571	chr1	206466921	206467680	+	0	NA	Intergenic	L2a|LINE|L2	-3176	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
152145	chr22	19988051	19988150	+	0	NA	intron (NM_001670, intron 3 of 19)	MIRb|SINE|MIR	24347	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
25579	chr10	8033951	8034250	+	0	NA	Intergenic	CpG	18391	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
35725	chr11	1991321	1991600	+	0	NA	intron (NR_126400, intron 1 of 2)	intron (NR_126400, intron 1 of 2)	364	NR_126400	104355220		NR_126400		LINC01219	-	long intergenic non-protein coding RNA 1219	ncRNA
203152	chr6	166998401	167000130	+	0	NA	promoter-TSS (NM_007045)	promoter-TSS (NM_007045)	-52	NM_001278690	11116		NM_007045	ENSG00000213066	CEP43	FGFR1OP|FOP	centrosomal protein 43	protein-coding
183929	chr5	87402801	87403000	+	0	NA	intron (NR_157069, intron 4 of 8)	intron (NR_157069, intron 4 of 8)	10004	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
76995	chr15	78308351	78308680	+	0	NA	Intergenic	Intergenic	-8906	NM_001303247	80349		NM_025234	ENSG00000140395	SKIC8	REC14|SKI8|WDR61	SKI8 subunit of superkiller complex	protein-coding
228468	chr9	99852901	99853100	+	0	NA	intron (NM_173200, intron 8 of 8)	MIRb|SINE|MIR	31115	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
221665	chr8	125970151	125970450	+	0	NA	Intergenic	AluSc5|SINE|Alu	-19103	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
106849	chr18	24050201	24050400	+	0	NA	intron (NM_001135993, intron 1 of 13)	AluJb|SINE|Alu	-34840	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
42004	chr11	67399651	67399750	+	0	NA	intron (NM_206873, intron 2 of 5)	intron (NM_206873, intron 2 of 5)	2158	NM_001008709	5499		NM_002708	ENSG00000172531	PPP1CA	PP-1A|PP1A|PP1alpha|PPP1A	protein phosphatase 1 catalytic subunit alpha	protein-coding
236847	chrX	79268871	79269030	+	0	NA	Intergenic	Intergenic	98384	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
215625	chr7	159253621	159253950	+	0	NA	Intergenic	Intergenic	-108828	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
90954	chr17	2661001	2661400	+	0	NA	intron (NM_000430, intron 2 of 10)	L1PA8|LINE|L1	31719	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
5666	chr1	26316501	26316900	+	0	NA	intron (NM_145345, intron 1 of 14)	MIRb|SINE|MIR	-1258	NM_001803	1043		NM_001803	ENSG00000169442	CD52	CDW52|EDDM5|HE5	CD52 molecule	protein-coding
12827	chr1	110032301	110032500	+	0	NA	intron (NM_001270768, intron 1 of 20)	intron (NM_001270768, intron 1 of 20)	823	NM_001270768	85369		NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
211854	chr7	110993121	110993380	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-97756	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
221801	chr8	127979851	127980900	+	0	NA	intron (NR_003367, intron 3 of 8)	L2c|LINE|L2	19742	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
56089	chr12	110677121	110678250	+	0	NA	intron (NM_001256413, intron 2 of 6)	intron (NM_001256413, intron 2 of 6)	11430	NM_032369	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
94542	chr17	29583521	29584180	+	0	NA	intron (NM_001085454, intron 1 of 20)	intron (NM_001085454, intron 1 of 20)	5798	NM_014030	28964		NM_014030	ENSG00000108262	GIT1	p95-APP1	GIT ArfGAP 1	protein-coding
13973	chr1	120544321	120544900	+	0	NA	intron (NR_144516, intron 13 of 43)	L2c|LINE|L2	-14075	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
216026	chr8	9149001	9149580	+	0	NA	intron (NM_001201329, intron 1 of 1).2	AluY|SINE|Alu	1368	NM_024607	79660		NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
127387	chr2	41747371	41747730	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-130005	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
16117	chr1	153643221	153643680	+	0	NA	intron (NM_015607, intron 5 of 5)	intron (NM_015607, intron 5 of 5)	-9089	NM_001024210	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
15344	chr1	149925771	149926630	+	0	NA	intron (NM_005850, intron 3 of 5)	intron (NM_005850, intron 3 of 5)	1603	NM_005850	10262		NM_005850	ENSG00000143368	SF3B4	AFD1|Hsh49|SAP49|SF3b49	splicing factor 3b subunit 4	protein-coding
84326	chr16	30177851	30178430	+	0	NA	Intergenic	AluY|SINE|Alu	-5270	NM_001193333	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
92171	chr17	7710371	7710730	+	0	NA	3' UTR (NM_001406, exon 5 of 5)	3' UTR (NM_001406, exon 5 of 5)	5348	NM_001406	1949		NM_001406	ENSG00000108947	EFNB3	EFL6|EPLG8|LERK8	ephrin B3	protein-coding
57479	chr12	122067671	122068630	+	0	NA	non-coding (NR_135044, exon 3 of 4)	non-coding (NR_135044, exon 3 of 4)	4860	NR_135044	100506691		NR_135044	ENSG00000256546	LINC02985	-	long intergenic non-protein coding RNA 2985	ncRNA
17064	chr1	156107971	156108530	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	-6461	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
125697	chr2	20348401	20349030	+	0	NA	intron (NM_001352925, intron 1 of 19)	AluJb|SINE|Alu	2129	NM_001352927	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
217350	chr8	27774131	27775330	+	0	NA	intron (NM_001017420, intron 1 of 10)	CpG	176	NM_001017420	157570		NM_001017420	ENSG00000171320	ESCO2	2410004I17Rik|EFO2|EFO2p|JHS|RBS|hEFO2	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding
212915	chr7	130906651	130907350	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	6310	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
34687	chr10	133377321	133377580	+	0	NA	Intergenic	Intergenic	-1812	NM_207127	196743		NM_152911	ENSG00000148832	PAOX	PAO	polyamine oxidase	protein-coding
92878	chr17	16427921	16428530	+	0	NA	intron (NM_016113, intron 8 of 14)	intron (NM_016113, intron 8 of 14)	-10762	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
44619	chr11	108697901	108698130	+	0	NA	intron (NM_004398, intron 9 of 17)	intron (NM_004398, intron 9 of 17)	32946	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
43869	chr11	88328701	88329100	+	0	NA	intron (NM_148170, intron 2 of 3)	intron (NM_148170, intron 2 of 3)	8836	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
227030	chr9	83959271	83959630	+	0	NA	Intergenic	AluJb|SINE|Alu	-2464	NM_001317997	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
51857	chr12	53475751	53476050	+	0	NA	intron (NM_031989, intron 14 of 14)	intron (NM_031989, intron 14 of 14)	11432	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
94054	chr17	27353451	27354580	+	0	NA	Intergenic	CpG	59901	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
158073	chr22	49963661	49964750	+	0	NA	TTS (NM_001001852)	TTS (NM_001001852)	1339	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
68681	chr14	90333071	90333230	+	0	NA	Intergenic	AluJb|SINE|Alu	-1209	NM_017970	55051		NM_017970	ENSG00000119720	NRDE2	C14orf102	NRDE-2, necessary for RNA interference, domain containing	protein-coding
87656	chr16	74584401	74584800	+	0	NA	intron (NM_001145667, intron 1 of 25)	L1PB1|LINE|L1	22514	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
162213	chr3	47031021	47032100	+	0	NA	intron (NR_146158, intron 19 of 21)	L1M4a1|LINE|L1	20018	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
219592	chr8	79900801	79901180	+	0	NA	Intergenic	MER65B|LTR|ERV1	-29253	NR_110954	101927040		NR_110954	ENSG00000249328	LOC101927040	-	uncharacterized LOC101927040	ncRNA
201056	chr6	142388301	142388500	+	0	NA	intron (NM_020455, intron 6 of 25)	intron (NM_020455, intron 6 of 25)	86393	NM_198569	57211		NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
228837	chr9	112174151	112175600	+	0	NA	intron (NM_022486, intron 1 of 16)	CpG	422	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
205173	chr7	7564621	7565080	+	0	NA	intron (NR_110084, intron 1 of 4)	L2a|LINE|L2	1215	NR_110084	101927391		NR_110084		MIOS-DT	-	MIOS divergent transcript	ncRNA
184221	chr5	96336201	96336650	+	0	NA	intron (NR_130776, intron 3 of 4)	intron (NR_130776, intron 3 of 4)	95734	NM_001177875	5122		NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC1/3|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
22137	chr1	211938521	211939230	+	0	NA	Intergenic	(AACTGA)n|Simple_repeat|Simple_repeat	-96678	NM_001286230	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
157225	chr22	43230771	43231750	+	0	NA	intron (NM_173050, intron 8 of 21)	L2c|LINE|L2	18586	NR_134632	105373051		NR_134632	ENSG00000236272	SCUBE1-AS2	-	SCUBE1 antisense RNA 2	ncRNA
162982	chr3	49711701	49711980	+	0	NA	intron (NR_135218, intron 26 of 38)	intron (NR_135218, intron 26 of 38)	7844	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
41792	chr11	66858921	66859630	+	0	NA	intron (NM_001363524, intron 2 of 2)	intron (NM_001363524, intron 2 of 2)	2211	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
26024	chr10	12344901	12345700	+	0	NA	Intergenic	AluSc8|SINE|Alu	-4247	NM_020397	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
206824	chr7	37284801	37285280	+	0	NA	intron (NM_014800, intron 4 of 21)	LTR41C|LTR|ERVL	68628	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
73942	chr15	51688971	51689150	+	0	NA	intron (NM_013243, intron 5 of 11)	intron (NM_013243, intron 5 of 11)	7557	NM_013243	29106		NM_013243	ENSG00000104112	SCG3	SGIII	secretogranin III	protein-coding
9723	chr1	53137821	53138080	+	0	NA	intron (NM_001287595, intron 1 of 10)	HAL1|LINE|L1	4688	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
143405	chr20	29410501	29410700	+	0	NA	Intergenic	CpG	6361	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
175322	chr4	68338721	68339580	+	0	NA	intron (NM_001031732, intron 1 of 16)	L1MC4|LINE|L1	10940	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
178165	chr4	142366721	142367200	+	0	NA	intron (NM_001385334, intron 6 of 24)	LTR33|LTR|ERVL	36173	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
158379	chr22	50485271	50486050	+	0	NA	3' UTR (NM_001253845, exon 3 of 3)	3' UTR (NM_001253845, exon 3 of 3)	-1199	NM_017584	55586		NM_017584	ENSG00000100253	MIOX	ALDRL6	myo-inositol oxygenase	protein-coding
204986	chr7	6411021	6411280	+	0	NA	intron (NM_139179, intron 13 of 14)	AluYc|SINE|Alu	36623	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
127014	chr2	36926801	36927550	+	0	NA	intron (NM_003162, intron 1 of 17)	intron (NM_003162, intron 1 of 17)	39361	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
19547	chr1	179004021	179004580	+	0	NA	Intergenic	Intergenic	-21504	NM_001324310	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
10658	chr1	70412321	70413350	+	0	NA	intron (NM_153742, intron 1 of 10)	MIRc|SINE|MIR	1567	NM_001902	1491		NM_001902	ENSG00000116761	CTH	CGL|CSE	cystathionine gamma-lyase	protein-coding
164517	chr3	63860051	63860800	+	0	NA	promoter-TSS (NR_104326)	promoter-TSS (NR_104326)	-220	NR_104326	100874039		NR_104326	ENSG00000240549	THOC7-AS1	-	THOC7 antisense RNA 1	ncRNA
210919	chr7	101220001	101220350	+	0	NA	intron (NM_006349, intron 1 of 4)	AluJo|SINE|Alu	2010	NM_006349	10467		NM_006349	ENSG00000106400	ZNHIT1	CG1I|ZNFN4A1|p18(Hamlet)	zinc finger HIT-type containing 1	protein-coding
81764	chr16	11500171	11500400	+	0	NA	intron (NM_001370704, intron 10 of 66)	AluSz|SINE|Alu	26962	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
40243	chr11	63615471	63615730	+	0	NA	Intergenic	MER34|LTR|ERV1	-1131	NM_001128203	11145		NM_007069	ENSG00000176485	PLAAT3	AdPLA|FPLD9|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3	phospholipase A and acyltransferase 3	protein-coding
54517	chr12	92110451	92110550	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	31213	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
48820	chr12	12210821	12211330	+	0	NA	intron (NM_002336, intron 2 of 22)	intron (NM_002336, intron 2 of 22)	55969	NM_002336	4040		NM_002336	ENSG00000070018	LRP6	ADCAD2|STHAG7	LDL receptor related protein 6	protein-coding
122183	chr19	48922421	48922880	+	0	NA	3' UTR (NM_006184, exon 13 of 13)	3' UTR (NM_006184, exon 13 of 13)	-3759	NR_046633	100874085		NR_046633	ENSG00000235191	NUCB1-AS1	-	NUCB1 antisense RNA 1	ncRNA
197616	chr6	82363301	82364230	+	0	NA	promoter-TSS (NM_001376922)	promoter-TSS (NM_001376922)	-52	NM_001376922	7162		NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
194669	chr6	33659701	33660350	+	0	NA	intron (NM_002224, intron 7 of 57)	intron (NM_002224, intron 7 of 57)	-26280	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
147046	chr20	53656021	53656530	+	0	NA	Intergenic	Intergenic	47921	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
227217	chr9	88578351	88578700	+	0	NA	Intergenic	Intergenic	43347	NM_145283	158046		NM_145283	ENSG00000130045	NXNL2	C9orf121|RDCVF2|RdCVF2L	nucleoredoxin like 2	protein-coding
66735	chr14	64500751	64502100	+	0	NA	promoter-TSS (NM_001354684)	promoter-TSS (NM_001354684)	-972	NM_001354684	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
120700	chr19	45170951	45171580	+	0	NA	intron (NM_001270891, intron 1 of 5)	AluSz6|SINE|Alu	6972	NM_024108	79090		NM_024108	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex subunit 6A	protein-coding
164491	chr3	60064701	60065850	+	0	NA	intron (NM_001320901, intron 2 of 6)	MIRb|SINE|MIR	15634	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
91537	chr17	4997021	4998880	+	0	NA	promoter-TSS (NM_006612)	promoter-TSS (NM_006612)	0	NM_006612	10749		NM_006612	ENSG00000129250	KIF1C	LTXS1|SATX2|SAX2|SPAX2|SPG58	kinesin family member 1C	protein-coding
78632	chr15	94247821	94248080	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	16389	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
170860	chr3	192444571	192444750	+	0	NA	intron (NM_001377293, intron 1 of 4)	intron (NM_001377293, intron 1 of 4)	-35063	NM_001377294	2257		NM_004113	ENSG00000114279	FGF12	DEE47|EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding
45989	chr11	121500401	121500800	+	0	NA	intron (NM_003105, intron 6 of 47)	MER58A|DNA|hAT-Charlie	-18811	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
41981	chr11	67375801	67376500	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	-1973	NM_001166212	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
35917	chr11	2425651	2426250	+	0	NA	Intergenic	Intergenic	-2905	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
150149	chr21	38766651	38767600	+	0	NA	intron (NR_027065, intron 1 of 6)	intron (NR_027065, intron 1 of 6)	1849	NR_027066	400866		NM_001001789	ENSG00000223806	LINC00114	C21orf24|NCRNA00114	long intergenic non-protein coding RNA 114	ncRNA
181620	chr5	44875671	44876050	+	0	NA	Intergenic	LTR78|LTR|ERV1	66913	NM_016640	10884		NM_016640	ENSG00000112996	MRPS30	MRP-S30|PAP|PDCD9|S30mt|mL65	mitochondrial ribosomal protein S30	protein-coding
3549	chr1	16145821	16146280	+	0	NA	intron (NM_004431, intron 3 of 16)	intron (NM_004431, intron 3 of 16)	10019	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
60163	chr13	40145101	40145400	+	0	NA	Intergenic	MIRb|SINE|MIR	-36559	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
14210	chr1	143191721	143192080	+	0	NA	Intergenic	Intergenic	230692	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
194580	chr6	33424901	33426400	+	0	NA	intron (NM_006772, intron 2 of 18).2	intron (NM_006772, intron 2 of 18).2	5585	NM_006772	8831		NM_006772	ENSG00000197283	SYNGAP1	MRD5|RASA1|RASA5|SYNGAP	synaptic Ras GTPase activating protein 1	protein-coding
421	chr1	1082921	1083180	+	0	NA	intron (NM_017891, intron 9 of 9)	intron (NM_017891, intron 9 of 9)	-8744	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
86352	chr16	66519751	66520050	+	0	NA	intron (NR_073520, intron 5 of 8)	intron (NR_073520, intron 5 of 8)	30222	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
59240	chr13	23890351	23890530	+	0	NA	TTS (NM_001007537)	TTS (NM_001007537)	835	NM_001348114								
28559	chr10	50621621	50625000	+	0	NA	intron (NM_147156, intron 1 of 10)	CpG	646	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
164760	chr3	69088151	69088900	+	0	NA	intron (NM_006407, intron 1 of 2)	intron (NM_006407, intron 1 of 2)	3588	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
236525	chrX	72103351	72103880	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	28300	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
21620	chr1	206577801	206578900	+	0	NA	intron (NM_182665, intron 1 of 4)	MIR|SINE|MIR	21186	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
172730	chr4	2819751	2821230	+	0	NA	intron (NM_003023, intron 1 of 12)	intron (NM_003023, intron 1 of 12)	1676	NM_003023	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
45238	chr11	117974451	117975180	+	0	NA	Intergenic	Intergenic	-11579	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
183194	chr5	75735271	75735450	+	0	NA	Intergenic	Intergenic	-17923	NM_001099271	134359		NM_152408	ENSG00000152359	POC5	C5orf37	POC5 centriolar protein	protein-coding
110012	chr19	1435551	1436030	+	0	NA	TTS (NM_001352034)	TTS (NM_001352034)	-2606	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
228496	chr9	100085671	100085830	+	0	NA	intron (NM_015051, intron 1 of 11)	AluSq2|SINE|Alu	13250	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
150092	chr21	37423271	37423430	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	3051	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
41596	chr11	66367771	66368150	+	0	NA	intron (NR_125343, intron 5 of 11)	intron (NR_125343, intron 5 of 11)	3800	NM_001532	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
184433	chr5	99020271	99020430	+	0	NA	Intergenic	Intergenic	91216	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
71897	chr15	22616071	22616630	+	0	NA	intron (NM_001282472, intron 1 of 18).4	intron (NM_001282472, intron 1 of 18).4	1504	NM_001282472	653073		NM_001282472	ENSG00000179938	GOLGA8J	-	golgin A8 family member J	protein-coding
185035	chr5	115622921	115623380	+	0	NA	intron (NM_181836, intron 1 of 2)	MER68C|LTR|ERVL	2886	NM_181836	51014		NM_181836	ENSG00000134970	TMED7	CGI-109|Tag|p24g3|p24gamma3|p27	transmembrane p24 trafficking protein 7	protein-coding
77944	chr15	89337001	89337430	+	0	NA	Intergenic	Intergenic	-2391	NM_002693	5428		NM_002693	ENSG00000140521	POLG	MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE	DNA polymerase gamma, catalytic subunit	protein-coding
219796	chr8	81234301	81234530	+	0	NA	Intergenic	Intergenic	-46121	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
62541	chr13	99608121	99609380	+	0	NA	intron (NM_206808, intron 1 of 8)	L1M4|LINE|L1	2060	NR_104592	171425		NM_206808	ENSG00000125246	CLYBL	CLB	citramalyl-CoA lyase	protein-coding
207336	chr7	44061721	44062400	+	0	NA	TTS (NM_000290)	TTS (NM_000290)	3507	NM_000290	5224		NM_000290	ENSG00000164708	PGAM2	GSD10|PGAM-M|PGAMM	phosphoglycerate mutase 2	protein-coding
192966	chr6	27867201	27868050	+	0	NA	promoter-TSS (NM_005322)	promoter-TSS (NM_005322)	-37	NM_005322	3009		NM_005322	ENSG00000184357	H1-5	H1|H1.5|H1B|H1F5|H1s-3|HIST1H1B	H1.5 linker histone, cluster member	protein-coding
155265	chr22	38006651	38006900	+	0	NA	intron (NM_001301130, intron 5 of 5)	MIRc|SINE|MIR	17981	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
230181	chr9	127791951	127792530	+	0	NA	Intergenic	AluSx|SINE|Alu	6206	NM_001261	1025		NM_001261	ENSG00000136807	CDK9	C-2k|CDC2L4|CTK1|PITALRE|TAK	cyclin dependent kinase 9	protein-coding
42192	chr11	67991651	67992280	+	0	NA	intron (NM_030930, intron 10 of 10)	CpG	12132	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
64172	chr14	22931451	22932200	+	0	NA	intron (NR_110002, intron 1 of 2)	L1MC3|LINE|L1	2216	NR_110002	101926933		NR_110002	ENSG00000257285	PRMT5-DT	-	PRMT5 divergent transcript	ncRNA
9345	chr1	46675401	46676180	+	0	NA	3' UTR (NM_014774, exon 11 of 11)	3' UTR (NM_014774, exon 11 of 11)	1754	NR_038827	100130197		NR_038827	ENSG00000228237	EFCAB14-AS1	KIAA0494-AS1	EFCAB14 antisense RNA 1	ncRNA
118084	chr19	34363271	34363630	+	0	NA	Intergenic	Intergenic	-1290	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
202717	chr6	158854251	158855180	+	0	NA	intron (NR_028496, intron 2 of 2)	MER4C|LTR|ERV1	2917	NR_028496	202459		NM_145303	ENSG00000293101	OSTCP1	DC2L|OSTCL	oligosaccharyltransferase complex subunit pseudogene 1	pseudo
132719	chr2	109127901	109128690	+	0	NA	promoter-TSS (NM_001099289)	promoter-TSS (NM_001099289)	-910	NM_001099289	344558		NM_001099289	ENSG00000172985	SH3RF3	POSH2|SH3MD4	SH3 domain containing ring finger 3	protein-coding
50683	chr12	48860151	48860750	+	0	NA	intron (NM_014470, intron 4 of 4)	AluJo|SINE|Alu	5420	NM_014470	27289		NM_014470	ENSG00000172602	RND1	ARHS|RHO6|RHOS	Rho family GTPase 1	protein-coding
11644	chr1	91780551	91780850	+	0	NA	intron (NR_036634, intron 4 of 17)	AluSq2|SINE|Alu	105451	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
21737	chr1	206801271	206801700	+	0	NA	intron (NM_153758, intron 2 of 6)	L2c|LINE|L2	-27392	NM_013371	29949		NM_013371	ENSG00000142224	IL19	IL-10C|MDA1|NG.1|ZMDA1	interleukin 19	protein-coding
167578	chr3	129551821	129552330	+	0	NA	TTS (NM_001308262)	TTS (NM_001308262)	3690	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
98759	chr17	48105371	48105780	+	0	NA	Intergenic	AluJr|SINE|Alu	-1958	NM_001330320	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
161150	chr3	39049971	39050450	+	0	NA	intron (NR_164473, intron 1 of 2)	L2a|LINE|L2	1734	NR_164473	11280		NM_014139	ENSG00000168356	SCN11A	FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2	sodium voltage-gated channel alpha subunit 11	protein-coding
82164	chr16	14913201	14915430	+	0	NA	intron (NR_146231, intron 1 of 38)	AluSp|SINE|Alu	2553	NR_146231	109951030		NR_146231		PKD1P3-NPIPA1	-	PKD1P3-NPIPA1 readthrough	pseudo
108507	chr18	74151471	74151830	+	0	NA	intron (NM_014177, intron 1 of 5)	ERV3-16A3_I-int|LTR|ERVL	3127	NM_014177	29090		NM_014177	ENSG00000075336	TIMM21	C18orf55|HSPC154|TIM21	translocase of inner mitochondrial membrane 21	protein-coding
238509	chrX	153651701	153652000	+	0	NA	TTS (NM_001395)	TTS (NM_001395)	4647	NM_001318503	1852		NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
223309	chr8	143809251	143809880	+	0	NA	exon (NM_015356, exon 14 of 36)	exon (NM_015356, exon 14 of 36)	3477	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
125679	chr2	20313671	20313830	+	0	NA	intron (NM_001282752, intron 2 of 19)	AluJb|SINE|Alu	13636	NM_001282791	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
44311	chr11	102359571	102359730	+	0	NA	intron (NM_001256166, intron 3 of 8)	L1MA9|LINE|L1	12276	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
56437	chr12	113462351	113463050	+	0	NA	3' UTR (NM_022363, exon 5 of 5)	3' UTR (NM_022363, exon 5 of 5)	9171	NM_022363	64211		NM_022363	ENSG00000089116	LHX5	-	LIM homeobox 5	protein-coding
151094	chr21	44844621	44844880	+	0	NA	Intergenic	MER41C|LTR|ERV1	-26621	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
3074	chr1	12182851	12183380	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	-8598	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
48075	chr12	7142001	7142480	+	0	NA	intron (NM_014718, intron 10 of 17)	intron (NM_014718, intron 10 of 17)	11869	NM_014718	9746		NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
111014	chr19	3053801	3054200	+	0	NA	exon (NM_001130, exon 7 of 7)	exon (NM_001130, exon 7 of 7)	-6365	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
68389	chr14	80714571	80714750	+	0	NA	intron (NR_157142, intron 19 of 24)	intron (NR_157142, intron 19 of 24)	227078	NR_157142	145508		NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding
135342	chr2	160390871	160391430	+	0	NA	intron (NM_016836, intron 1 of 13)	MLT1C|LTR|ERVL-MaLR	16732	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
177362	chr4	110315571	110315730	+	0	NA	Intergenic	Intergenic	-117035	NM_024090	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
224278	chr9	6412071	6414700	+	0	NA	non-coding (NR_046386, exon 1 of 17)	non-coding (NR_046386, exon 1 of 17)	186	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
66103	chr14	59630501	59630700	+	0	NA	5' UTR (NM_206852, exon 1 of 7)	5' UTR (NM_206852, exon 1 of 7)	214	NM_206852	6252		NM_021136	ENSG00000139970	RTN1	NSP	reticulon 1	protein-coding
112061	chr19	5151271	5151650	+	0	NA	exon (NM_015015, exon 23 of 23)	exon (NM_015015, exon 23 of 23)	182347	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
113632	chr19	10328521	10328980	+	0	NA	exon (NM_001366174, exon 3 of 14)	exon (NM_001366174, exon 3 of 14)	4779	NM_133452	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
202560	chr6	158664021	158664280	+	0	NA	intron (NM_001318745, intron 1 of 14)	intron (NM_001318745, intron 1 of 14)	747	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
56955	chr12	120500471	120500830	+	0	NA	Intergenic	Intergenic	4537	NM_003746	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
12446	chr1	107782221	107782700	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-93961	NM_001079874	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
128250	chr2	54561901	54563150	+	0	NA	intron (NM_178313, intron 1 of 30)	AluJb|SINE|Alu	4131	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
198157	chr6	91899251	91899350	+	0	NA	Intergenic	AluYh3|SINE|Alu	-208872	NR_104154	101929083		NR_104154		CASC6	-	cancer susceptibility 6	ncRNA
49680	chr12	30695321	30696630	+	0	NA	promoter-TSS (NM_006390)	promoter-TSS (NM_006390)	-106	NM_006390	10526		NM_006390	ENSG00000133704	IPO8	RANBP8|VISS	importin 8	protein-coding
6970	chr1	31783971	31784330	+	0	NA	Intergenic	Intergenic	-19810	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
150238	chr21	41363671	41363830	+	0	NA	intron (NM_002463, intron 1 of 13)	intron (NM_002463, intron 1 of 13)	1723	NM_002463	4600		NM_002463	ENSG00000183486	MX2	MXB	MX dynamin like GTPase 2	protein-coding
180068	chr5	1095721	1096180	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	16113	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
211217	chr7	102629971	102630330	+	0	NA	Intergenic	Intergenic	12641	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
132687	chr2	108938351	108938450	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	50820	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
202689	chr6	158801801	158802200	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-15979	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
46913	chr11	134231471	134232030	+	0	NA	intron (NM_052875, intron 1 of 5)	AluSg4|SINE|Alu	-6289	NM_001372070	23310		NM_015261	ENSG00000151503	NCAPD3	CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6	non-SMC condensin II complex subunit D3	protein-coding
186636	chr5	138553371	138553680	+	0	NA	TTS (NM_004134)	TTS (NM_004134)	5516	NR_145752	109617013		NR_145752	ENSG00000222937	SNORD63B	-	small nucleolar RNA, C/D box 63B	snoRNA
43177	chr11	75391101	75391300	+	0	NA	Intergenic	MIR|SINE|MIR	-8291	NM_001260507	6188		NM_001005	ENSG00000149273	RPS3	S3|uS3	ribosomal protein S3	protein-coding
29921	chr10	73263821	73264130	+	0	NA	intron (NM_001367801, intron 26 of 27)	L1MC4a|LINE|L1	11234	NR_134460	414245		NR_038373	ENSG00000236756	DNAJC9-AS1	C10orf103|bA537A6.3	DNAJC9 and MRPS16 antisense RNA 1	ncRNA
16040	chr1	152354671	152355350	+	0	NA	exon (NM_001014342, exon 3 of 3)	exon (NM_001014342, exon 3 of 3)	4996	NM_001014342	388698		NM_001014342	ENSG00000143520	FLG2	IFPS|PSS6	filaggrin 2	protein-coding
218287	chr8	42329551	42330250	+	0	NA	intron (NM_001190720, intron 20 of 20)	intron (NM_001190720, intron 20 of 20)	-8594	NM_002690	5423		NM_002690	ENSG00000070501	POLB	-	DNA polymerase beta	protein-coding
99634	chr17	50603251	50603830	+	0	NA	intron (NM_198376, intron 20 of 34)	intron (NM_198376, intron 20 of 34)	-31341	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
417	chr1	1079101	1080550	+	0	NA	Intergenic	Intergenic	-5519	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
24742	chr1	248612051	248612150	+	0	NA	Intergenic	L1PREC2|LINE|L1	15028	NM_001001964	127077		NM_001001964	ENSG00000279301	OR2T11	OR2T11Q	olfactory receptor family 2 subfamily T member 11	protein-coding
58161	chr12	124947571	124947730	+	0	NA	3' UTR (NM_032656, exon 27 of 27)	3' UTR (NM_032656, exon 27 of 27)	32103	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
210852	chr7	101088771	101089150	+	0	NA	exon (NM_030961, exon 3 of 3)	exon (NM_030961, exon 3 of 3)	3479	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
91948	chr17	7353271	7353700	+	0	NA	exon (NM_001002914, exon 1 of 1)	exon (NM_001002914, exon 1 of 1)	1323	NM_001363642	147040		NM_001002914	ENSG00000213859	KCTD11	C17orf36|KCASH1|REN|REN/KCTD11	potassium channel tetramerization domain containing 11	protein-coding
200418	chr6	134881951	134882700	+	0	NA	Intergenic	Intergenic	67776	NM_170771	64577		NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding
84113	chr16	29662521	29664900	+	0	NA	5' UTR (NM_001030288, exon 2 of 2)	5' UTR (NM_001030288, exon 2 of 2)	463	NM_003123	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
69821	chr14	99219401	99219850	+	0	NA	intron (NM_022898, intron 2 of 2)	MIRc|SINE|MIR	52572	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
180096	chr5	1154421	1154750	+	0	NA	Intergenic	Intergenic	24020	NR_109911	101928857		NR_109911	ENSG00000249201	TERLR1	CTD-3080P12.3	TERT regulating lncRNA 1	ncRNA
75028	chr15	64099501	64100230	+	0	NA	intron (NM_001242933, intron 1 of 14)	AluSz|SINE|Alu	3883	NM_003099	6642		NM_003099	ENSG00000028528	SNX1	HsT17379|VPS5	sorting nexin 1	protein-coding
5060	chr1	24640221	24640830	+	0	NA	Intergenic	AluJb|SINE|Alu	-2777	NM_001366568	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
38136	chr11	35305501	35306010	+	0	NA	intron (NM_004171, intron 5 of 10)	intron (NM_004171, intron 5 of 10)	113803	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
200685	chr6	137233571	137233930	+	0	NA	Intergenic	MIRc|SINE|MIR	-14365	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
217665	chr8	30092551	30094050	+	0	NA	Intergenic	LTR7|LTR|ERV1	-2108	NM_001128208	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
58868	chr12	133263921	133264300	+	0	NA	Intergenic	L1MC|LINE|L1	-28233	NM_001372060	647589		NM_001191054	ENSG00000227059	ANHX	-	anomalous homeobox	protein-coding
70900	chr14	103922951	103923250	+	0	NA	Intergenic	L1MEg|LINE|L1	-1571	NM_004894	9556		NM_004894	ENSG00000156411	ATP5MJ	6.8PL|ATP5MPL|C14orf2|MLQ|MP68|PLPM	ATP synthase membrane subunit j	protein-coding
25320	chr10	6221971	6222130	+	0	NA	intron (NM_001145443, intron 10 of 14)	intron (NM_001145443, intron 10 of 14)	19118	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
235943	chrX	53262901	53263580	+	0	NA	intron (NM_001111125, intron 2 of 14)	L3b|LINE|CR1	18344	NM_015075	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
186114	chr5	134137171	134137730	+	0	NA	intron (NM_001366502, intron 1 of 7)	AluSx1|SINE|Alu	13832	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
69128	chr14	92534101	92534300	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	20419	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
135193	chr2	158457401	158458480	+	0	NA	promoter-TSS (NM_001377223)	promoter-TSS (NM_001377223)	47	NM_001377218	8502		NM_003628	ENSG00000144283	PKP4	p0071	plakophilin 4	protein-coding
192998	chr6	28140951	28141050	+	0	NA	promoter-TSS (NM_006298)	promoter-TSS (NM_006298)	-883	NM_006298	7745		NM_006298	ENSG00000198315	ZKSCAN8	LD5-1|ZNF192|ZSCAN40	zinc finger with KRAB and SCAN domains 8	protein-coding
6618	chr1	28886401	28888530	+	0	NA	intron (NM_001376022, intron 1 of 20)	CpG	365	NM_001376023	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
87899	chr16	78800651	78800980	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	701161	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
111387	chr19	3739201	3739650	+	0	NA	intron (NM_001267560, intron 13 of 20)	AluSc|SINE|Alu	17688	NM_001267561	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
19289	chr1	172826121	172826650	+	0	NA	Intergenic	Intergenic	167282	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
94746	chr17	30806871	30807030	+	0	NA	intron (NM_015986, intron 1 of 7)	intron (NM_015986, intron 1 of 7)	17742	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
91771	chr17	6936421	6937030	+	0	NA	Intergenic	MER51A|LTR|ERV1	42948	NR_120453	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
95779	chr17	38698351	38698930	+	0	NA	Intergenic	AluSp|SINE|Alu	-2504	NR_158157	105371763		NR_158157		LOC105371763	-	uncharacterized LOC105371763	ncRNA
219768	chr8	81100351	81101030	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	11378	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
99353	chr17	49882671	49882830	+	0	NA	Intergenic	Intergenic	-34733	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
227854	chr9	93573571	93573930	+	0	NA	Intergenic	Intergenic	-2834	NM_005392	5253		NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding
24308	chr1	236793101	236793330	+	0	NA	Intergenic	AluSz|SINE|Alu	-2066	NM_001291939	4548		NM_000254	ENSG00000116984	MTR	HMAG|MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
217801	chr8	33564901	33565380	+	0	NA	intron (NM_024787, intron 1 of 5)	intron (NM_024787, intron 1 of 5)	1988	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
69783	chr14	99182601	99183200	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	89297	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
45055	chr11	117051721	117051980	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	46578	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
30513	chr10	79331301	79332070	+	0	NA	Intergenic	MIR3|SINE|MIR	-15784	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
171256	chr3	195856571	195856930	+	0	NA	intron (NR_134939, intron 1 of 1)	intron (NR_134939, intron 1 of 1)	-2522	NR_134940	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
108886	chr18	79404471	79404850	+	0	NA	intron (NM_001278673, intron 1 of 8)	intron (NM_001278673, intron 1 of 8)	4361	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
195450	chr6	36980821	36981830	+	0	NA	intron (NM_001271641, intron 2 of 11)	intron (NM_001271641, intron 2 of 11)	4871	NM_001271641	23787		NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
130715	chr2	86739951	86740250	+	0	NA	intron (NM_022780, intron 1 of 8)	MER1B|DNA|hAT-Charlie	-18978	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
211030	chr7	102419501	102419700	+	0	NA	intron (NR_038967, intron 8 of 8)	L1MC3|LINE|L1	-13745	NR_031669	100313829		NR_031669	ENSG00000221510	MIR548O	MIRN548O	microRNA 548o	ncRNA
101531	chr17	67858371	67858800	+	0	NA	intron (NM_182641, intron 2 of 27)	intron (NM_182641, intron 2 of 27)	33082	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
118317	chr19	35513051	35513350	+	0	NA	exon (NM_001190348, exon 1 of 13)	exon (NM_001190348, exon 1 of 13)	449	NM_033317	93099		NM_033317	ENSG00000161249	DMKN	UNQ729|ZD52F10	dermokine	protein-coding
158397	chr22	50517451	50518030	+	0	NA	intron (NM_014551, intron 4 of 8)	intron (NM_014551, intron 4 of 8)	7858	NM_005138	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
19938	chr1	184745651	184746580	+	0	NA	intron (NM_001319960, intron 2 of 20)	intron (NM_001319960, intron 2 of 20)	8743	NM_001319960	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
85540	chr16	53098701	53099950	+	0	NA	intron (NR_168108, intron 2 of 2)	intron (NR_168108, intron 2 of 2)	-31687	NM_001352127	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
101816	chr17	73547071	73547300	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	33502	NR_135635	101928251		NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA
163109	chr3	50118251	50118850	+	0	NA	non-coding (NR_036627, exon 24 of 24)	non-coding (NR_036627, exon 24 of 24)	-17562	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
223003	chr8	143273771	143274480	+	0	NA	intron (NM_138465, intron 2 of 3)	intron (NM_138465, intron 2 of 3)	6680	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
124937	chr2	8580471	8580630	+	0	NA	intron (NR_110257, intron 1 of 5)	intron (NR_110257, intron 1 of 5)	3242	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
74000	chr15	52066821	52067080	+	0	NA	3' UTR (NM_002748, exon 6 of 6)	3' UTR (NM_002748, exon 6 of 6)	45825	NM_020396	10017		NM_020396	ENSG00000137875	BCL2L10	BCL-B|Boo|Diva|bcl2-L-10	BCL2 like 10	protein-coding
55013	chr12	96372971	96374130	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSq2|SINE|Alu	26889	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
221350	chr8	123240471	123242230	+	0	NA	promoter-TSS (NM_032847)	promoter-TSS (NM_032847)	27	NM_032847	84933		NM_032847	ENSG00000189376	C8orf76	-	chromosome 8 open reading frame 76	protein-coding
13062	chr1	111469321	111469780	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-4434	NM_174896	128346		NM_174896	ENSG00000143110	C1orf162	-	chromosome 1 open reading frame 162	protein-coding
217307	chr8	27392621	27392880	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	-40620	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
134598	chr2	144324581	144325980	+	0	NA	intron (NM_001376310, intron 1 of 13)	intron (NM_001376310, intron 1 of 13)	6954	NM_001376318	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
148890	chr21	8459901	8460400	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	19004	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
75156	chr15	64626571	64627130	+	0	NA	intron (NM_015042, intron 3 of 9)	intron (NM_015042, intron 3 of 9)	76431	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
236896	chrX	85084771	85085050	+	0	NA	intron (NM_198450, intron 8 of 8)	intron (NM_198450, intron 8 of 8)	24058	NM_001012980	340562		NM_001012980	ENSG00000184788	SATL1	-	spermidine/spermine N1-acetyl transferase like 1	protein-coding
189080	chr5	170282701	170282900	+	0	NA	intron (NM_005565, intron 3 of 20)	MIR|SINE|MIR	14977	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
53739	chr12	68638501	68638930	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluSz|SINE|Alu	-11340	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
95259	chr17	35486051	35486350	+	0	NA	intron (NM_001363830, intron 2 of 4)	L1P4|LINE|L1	1539	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
91251	chr17	3961301	3962330	+	0	NA	intron (NM_174953, intron 1 of 22)	MIRb|SINE|MIR	2622	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
111881	chr19	4657251	4657750	+	0	NA	TTS (NM_019107)	TTS (NM_019107)	12842	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
153938	chr22	30337201	30337500	+	0	NA	intron (NM_005877, intron 12 of 15)	intron (NM_005877, intron 12 of 15)	-10409	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
206108	chr7	27212421	27212680	+	0	NA	Intergenic	Intergenic	12129	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
67488	chr14	70920701	70921030	+	0	NA	intron (NM_014982, intron 1 of 35)	intron (NM_014982, intron 1 of 35)	13406	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
15383	chr1	150161321	150161730	+	0	NA	intron (NR_135098, intron 1 of 3)	intron (NR_135098, intron 1 of 3)	797	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
31352	chr10	93379351	93380050	+	0	NA	intron (NM_133337, intron 20 of 52)	MLT1J|LTR|ERVL-MaLR	102634	NM_133337	26509		NM_013451	ENSG00000138119	MYOF	FER1L3|HAE7	myoferlin	protein-coding
53568	chr12	67647171	67650230	+	0	NA	promoter-TSS (NM_003583)	promoter-TSS (NM_003583)	-45	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
69056	chr14	91876821	91877080	+	0	NA	intron (NM_001384161, intron 11 of 12)	AluJb|SINE|Alu	-9414	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
123161	chr19	52199471	52199630	+	0	NA	intron (NR_033500, intron 1 of 13)	MER58A|DNA|hAT-Charlie	-1646	NM_001363656	5518		NM_014225	ENSG00000105568	PPP2R1A	HJS2|MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A	protein phosphatase 2 scaffold subunit Aalpha	protein-coding
96645	chr17	40609651	40609950	+	0	NA	Intergenic	AluJo|SINE|Alu	38018	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
118536	chr19	36056301	36056580	+	0	NA	intron (NM_173636, intron 1 of 31)	L2c|LINE|L2	1543	NM_173636	284403		NM_173636	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding
125990	chr2	25296771	25297400	+	0	NA	intron (NR_135490, intron 3 of 23)	intron (NR_135490, intron 3 of 23)	31636	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
180404	chr5	10350951	10351250	+	0	NA	Intergenic	AluJb|SINE|Alu	-2595	NM_005885	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
145614	chr20	44649551	44650250	+	0	NA	intron (NR_136160, intron 1 of 10)	AluYh3|SINE|Alu	1799	NM_000022	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
133056	chr2	112254351	112255600	+	0	NA	promoter-TSS (NM_032494)	promoter-TSS (NM_032494)	67	NM_032494	84524		NM_032494	ENSG00000144161	ZC3H8	Fliz1|ZC3HDC8	zinc finger CCCH-type containing 8	protein-coding
122458	chr19	49510601	49510800	+	0	NA	Intergenic	AluYc|SINE|Alu	-1961	NM_001136019	2217		NM_004107	ENSG00000104870	FCGRT	FCRN|FcgammaRn|alpha-chain	Fc gamma receptor and transporter	protein-coding
10857	chr1	77973301	77973880	+	0	NA	intron (NR_146539, intron 1 of 22)	intron (NR_146539, intron 1 of 22)	5482	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
109195	chr19	404671	405150	+	0	NA	TTS (NM_001136263)	TTS (NM_001136263)	4237	NM_001136263	126567		NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium dependent domain containing 4C	protein-coding
92924	chr17	16663051	16663380	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-9365	NM_020787	57547		NM_020787	ENSG00000197566	ZNF624	-	zinc finger protein 624	protein-coding
118811	chr19	38514271	38514430	+	0	NA	intron (NM_000540, intron 63 of 105)	AluSx1|SINE|Alu	80659	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
126045	chr2	25376451	25377900	+	0	NA	TTS (NM_001351387)	TTS (NM_001351387)	-34585	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
156389	chr22	41104201	41104400	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluSx1|SINE|Alu	11708	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
158891	chr3	9914801	9915980	+	0	NA	exon (NM_153481, exon 14 of 14)	exon (NM_153481, exon 14 of 14)	-1684	NM_001203264	84818		NM_032732	ENSG00000163702	IL17RC	CANDF9|IL17-RL|IL17RL	interleukin 17 receptor C	protein-coding
5843	chr1	26714221	26714680	+	0	NA	intron (NM_139135, intron 1 of 19)	AluSx4|SINE|Alu	18435	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
195044	chr6	35489221	35489480	+	0	NA	intron (NM_003214, intron 1 of 12)	MIR|SINE|MIR	7729	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
66078	chr14	59126821	59127380	+	0	NA	Intergenic	Intergenic	-61567	NM_001270520	23002		NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
22631	chr1	223699201	223699430	+	0	NA	Intergenic	AluJr|SINE|Alu	-2278	NM_001146068	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
73440	chr15	43218971	43219330	+	0	NA	intron (NM_001114134, intron 1 of 12)	MER63B|DNA|hAT-Blackjack	1868	NM_000119	2038		NM_000119	ENSG00000166947	EPB42	PA|SPH5	erythrocyte membrane protein band 4.2	protein-coding
159364	chr3	13314371	13314780	+	0	NA	Intergenic	Intergenic	-31318	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
209945	chr7	92626371	92626700	+	0	NA	intron (NM_001145306, intron 5 of 7)	MIRb|SINE|MIR	-36145	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
141708	chr2	241843751	241845050	+	0	NA	Intergenic	CpG	14494	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
188193	chr5	150655201	150655500	+	0	NA	intron (NM_007286, intron 2 of 2)	intron (NM_007286, intron 2 of 2)	-5491	NM_133371	91977		NM_133371	ENSG00000164591	MYOZ3	CS-3|CS3|FATZ-3|FRP3	myozenin 3	protein-coding
189201	chr5	171429251	171429550	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	9753	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
125646	chr2	19870051	19870380	+	0	NA	intron (NR_033875, intron 2 of 9)	intron (NR_033875, intron 2 of 9)	1361	NR_033875	400946		NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA
129432	chr2	69453501	69453700	+	0	NA	Intergenic	MER57B2|LTR|ERV1	-14033	NM_001374284	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
225140	chr9	33719421	33720650	+	0	NA	Intergenic	Intergenic	18381	NR_109755	101929688		NR_109755	ENSG00000235481	UBE2R2-AS1	LINC01251	UBE2R2 antisense RNA 1	ncRNA
36764	chr11	9389751	9390050	+	0	NA	intron (NM_006391, intron 1 of 24)	AluSq|SINE|Alu	5248	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
121423	chr19	47017321	47017580	+	0	NA	Intergenic	AluSx|SINE|Alu	-2387	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
142924	chr20	18465071	18465230	+	0	NA	intron (NM_001351684, intron 2 of 20)	intron (NM_001351684, intron 2 of 20)	1880	NM_001351684	55184		NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84	double zinc ribbon and ankyrin repeat domains 1	protein-coding
48493	chr12	9849551	9850130	+	0	NA	Intergenic	L1P3|LINE|L1	20019	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
115463	chr19	15351101	15352500	+	0	NA	Intergenic	AluSq2|SINE|Alu	-19261	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
160477	chr3	30604101	30605080	+	0	NA	Intergenic	L2c|LINE|L2	-1912	NM_001024847	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
114065	chr19	11087351	11088230	+	0	NA	Intergenic	AluY|SINE|Alu	-1673	NM_001195799	3949		NM_000527	ENSG00000130164	LDLR	FH|FHC|FHCL1|LDLCQ2	low density lipoprotein receptor	protein-coding
145713	chr20	45036001	45036480	+	0	NA	intron (NM_006282, intron 10 of 10)	MER44C|DNA|TcMar-Tigger	64887	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
140195	chr2	231680171	231680330	+	0	NA	Intergenic	Intergenic	-28275	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
194856	chr6	34514671	34514830	+	0	NA	promoter-TSS (NM_001199583)	promoter-TSS (NM_001199583)	-122	NM_001199583	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
236437	chrX	71532701	71533500	+	0	NA	promoter-TSS (NM_181673)	promoter-TSS (NM_181673)	-4	NM_181673	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
117231	chr19	19422351	19422650	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	-12563	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
106439	chr18	13611771	13613150	+	0	NA	5' UTR (NM_001003675, exon 1 of 3)	5' UTR (NM_001003675, exon 1 of 3)	696	NM_001276249	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
165340	chr3	88108801	88109000	+	0	NA	intron (NM_001350134, intron 2 of 8)	MER44C|DNA|TcMar-Tigger	40966	NM_001195308	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
146203	chr20	48779751	48780280	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	47984	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
80581	chr16	2874671	2876130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7795	NM_001142500	114984		NM_138439	ENSG00000162076	FLYWCH2	-	FLYWCH family member 2	protein-coding
151406	chr21	45991001	45991200	+	0	NA	intron (NM_001848, intron 15 of 34)	intron (NM_001848, intron 15 of 34)	9330	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
165875	chr3	106082471	106082830	+	0	NA	Intergenic	Intergenic	-213249	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
93692	chr17	19377301	19379080	+	0	NA	promoter-TSS (NM_139034)	promoter-TSS (NM_139034)	-277	NM_001368769	27077		NM_015681	ENSG00000108641	B9D1	B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1	B9 domain containing 1	protein-coding
138035	chr2	201290721	201290980	+	0	NA	intron (NR_110620, intron 11 of 13)	L1PA4|LINE|L1	30314	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
142042	chr20	1687851	1687950	+	0	NA	Intergenic	Intergenic	-30121	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
113555	chr19	10239201	10239600	+	0	NA	Intergenic	AluJo|SINE|Alu	-8069	NM_004230	9294		NM_004230	ENSG00000267534	S1PR2	AGR16|DFNB68|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding
212103	chr7	116180101	116180550	+	0	NA	Intergenic	Intergenic	-30214	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
181927	chr5	54882701	54883150	+	0	NA	Intergenic	Intergenic	102668	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
43379	chr11	77045971	77046430	+	0	NA	Intergenic	CpG	11802	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
63085	chr13	113207721	113210900	+	0	NA	promoter-TSS (NM_001354940)	promoter-TSS (NM_001354940)	-303	NM_001354943	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
210780	chr7	100724121	100724380	+	0	NA	TTS (NM_000799)	TTS (NM_000799)	3782	NM_000799	2056		NM_000799	ENSG00000130427	EPO	DBAL|ECYT5|EP|MVCD2	erythropoietin	protein-coding
92368	chr17	8210151	8211230	+	0	NA	promoter-TSS (NM_001313955)	promoter-TSS (NM_001313955)	-115	NM_004217	9212		NM_004217	ENSG00000178999	AURKB	AIK2|AIM-1|AIM1|ARK-2|ARK2|AurB|IPL1|PPP1R48|STK-1|STK12|STK5|aurkb-sv1|aurkb-sv2	aurora kinase B	protein-coding
1530	chr1	3160871	3161230	+	0	NA	intron (NM_199454, intron 1 of 16)	intron (NM_199454, intron 1 of 16)	33075	NR_036215	100422968		NR_036215	ENSG00000283572	MIR4251	-	microRNA 4251	ncRNA
131152	chr2	91520071	91520430	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	139699	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
207760	chr7	50119801	50120050	+	0	NA	intron (NM_001161834, intron 2 of 8)	intron (NM_001161834, intron 2 of 8)	24042	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
192612	chr6	26044911	26045980	+	0	NA	promoter-TSS (NM_003531)	promoter-TSS (NM_003531)	61	NM_003531	8352		NM_003531	ENSG00000287080	H3C3	H3.1|H3/c|H3C1|H3C10|H3C11|H3C12|H3C2|H3C4|H3C6|H3C7|H3C8|H3FC|HIST1H3C	H3 clustered histone 3	protein-coding
139691	chr2	227411201	227411600	+	0	NA	Intergenic	Intergenic	-32094	NM_024795	79853		NM_024795	ENSG00000168955	TM4SF20	PRO994|SLI5|TCCE518	transmembrane 4 L six family member 20	protein-coding
87525	chr16	71897651	71897750	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluSx|SINE|Alu	2169	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
12628	chr1	109116771	109116930	+	0	NA	intron (NM_001284352, intron 1 of 20)	AluSx|SINE|Alu	2735	NM_001267048	57535		NM_020775	ENSG00000116299	ELAPOR1	EIG121|KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein-coding
173503	chr4	9498421	9498830	+	0	NA	Intergenic	CpG	54091	NM_001040448	644414		NM_001040448	ENSG00000186146	DEFB131A	DEFB-31|DEFB131	defensin beta 131A	protein-coding
207491	chr7	44711851	44712350	+	0	NA	Intergenic	Intergenic	-36466	NM_001300959	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
120757	chr19	45415551	45416030	+	0	NA	intron (NM_001369409, intron 6 of 8)	MIR|SINE|MIR	7738	NM_001369416	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
216299	chr8	12602451	12602650	+	0	NA	intron (NR_047662, intron 4 of 8)	intron (NR_047662, intron 4 of 8)	63061	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
188342	chr5	151338651	151338950	+	0	NA	intron (NM_181776, intron 5 of 9)	intron (NM_181776, intron 5 of 9)	8759	NM_181776	153201		NM_181776	ENSG00000186335	SLC36A2	PAT2|TRAMD1	solute carrier family 36 member 2	protein-coding
142199	chr20	3018921	3019380	+	0	NA	intron (NM_001385321, intron 12 of 19)	SVA_D|Retroposon|SVA	-24472	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
207517	chr7	44803471	44804980	+	0	NA	Intergenic	AluSq2|SINE|Alu	7544	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
34181	chr10	128125601	128127350	+	0	NA	promoter-TSS (NM_002417)	promoter-TSS (NM_002417)	-52	NM_001145966	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
23696	chr1	231590451	231590900	+	0	NA	TTS (NR_034037)	TTS (NR_034037)	21415	NR_034037	100287814		NR_034037	ENSG00000229228	LINC00582	SMILO	long intergenic non-protein coding RNA 582	ncRNA
137519	chr2	197194801	197195000	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	-3091	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
236868	chrX	80809101	80810980	+	0	NA	promoter-TSS (NM_153252)	promoter-TSS (NM_153252)	-163	NM_153252	254065		NM_153252	ENSG00000165288	BRWD3	BRODL|MRX93|XLID93	bromodomain and WD repeat domain containing 3	protein-coding
32598	chr10	103564801	103565230	+	0	NA	intron (NM_004210, intron 1 of 5)	intron (NM_004210, intron 1 of 5)	-47573	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
195922	chr6	41783051	41783780	+	0	NA	intron (NM_013397, intron 2 of 7)	MIRb|SINE|MIR	2633	NM_013397	29964		NM_013397	ENSG00000278224	PRICKLE4	C6orf49|OBTP|OEBT|TOMM6	prickle planar cell polarity protein 4	protein-coding
9929	chr1	54478371	54478800	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-69643	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
228447	chr9	99836251	99836550	+	0	NA	intron (NM_173200, intron 6 of 8)	L3|LINE|CR1	14515	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
167986	chr3	136734071	136734980	+	0	NA	intron (NM_005862, intron 1 of 33)	LTR83|LTR|ERVL	17853	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
68187	chr14	76413901	76414100	+	0	NA	intron (NM_004452, intron 3 of 10)	CpG	37863	NM_001379180	2103		NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR beta-2|ERR2|ERRb|ERRbeta2|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
153074	chr22	23309071	23309230	+	0	NA	intron (NM_004327, intron 16 of 22)	intron (NM_004327, intron 16 of 22)	-17466	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
180172	chr5	1466721	1467200	+	0	NA	intron (NM_024830, intron 12 of 13)	intron (NM_024830, intron 12 of 13)	-21520	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
134566	chr2	144211971	144212130	+	0	NA	intron (NM_001164629, intron 2 of 11)	intron (NM_001164629, intron 2 of 11)	25289	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
76462	chr15	74845021	74845980	+	0	NA	exon (NM_005697, exon 8 of 9)	exon (NM_005697, exon 8 of 9)	-2344	NM_001284364	25989		NM_001099436	ENSG00000140474	ULK3	-	unc-51 like kinase 3	protein-coding
90230	chr17	582251	582750	+	0	NA	intron (NM_018289, intron 12 of 17)	intron (NM_018289, intron 12 of 17)	132339	NM_018289	55275		NM_018289	ENSG00000141252	VPS53	HCCS1|PCH2E|hVps53L|pp13624	VPS53 subunit of GARP complex	protein-coding
75398	chr15	65759251	65759550	+	0	NA	intron (NM_001376920, intron 1 of 30)	AluSx4|SINE|Alu	32893	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
25065	chr10	3806821	3807500	+	0	NA	Intergenic	Intergenic	-21879	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
27345	chr10	30682421	30683100	+	0	NA	Intergenic	Intergenic	-9514	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
104187	chr17	80429571	80429730	+	0	NA	intron (NM_001164638, intron 7 of 7)	intron (NM_001164638, intron 7 of 7)	10232	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
145136	chr20	38820571	38821280	+	0	NA	intron (NM_001172735, intron 1 of 9)	AluY|SINE|Alu	15228	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
234189	chrX	12771351	12771750	+	0	NA	Intergenic	Intergenic	-19805	NM_001039091	5634		NM_002765	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
38909	chr11	47418621	47419300	+	0	NA	intron (NM_002804, intron 11 of 11)	intron (NM_002804, intron 11 of 11)	7479	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
78176	chr15	90533971	90534130	+	0	NA	intron (NM_001042574, intron 1 of 14)	L2b|LINE|L2	4127	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
156083	chr22	40050121	40050700	+	0	NA	intron (NM_001024843, intron 1 of 23)	L2b|LINE|L2	5593	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
16611	chr1	155072351	155073030	+	0	NA	Intergenic	Intergenic	-6147	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
51658	chr12	53049021	53050530	+	0	NA	promoter-TSS (NM_170754)	promoter-TSS (NM_170754)	-290	NM_170754	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
92677	chr17	12023771	12023930	+	0	NA	intron (NM_003010, intron 1 of 10)	MIR|SINE|MIR	2973	NM_003010	6416		NM_003010	ENSG00000065559	MAP2K4	JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1	mitogen-activated protein kinase kinase 4	protein-coding
34888	chr11	375871	376300	+	0	NA	exon (NM_178537, exon 12 of 20)	exon (NM_178537, exon 12 of 20)	6586	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
162778	chr3	49087651	49088400	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluY|SINE|Alu	5607	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
98279	chr17	46212871	46214180	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluY|SINE|Alu	11842	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
4204	chr1	19449351	19450430	+	0	NA	intron (NM_001206541, intron 1 of 8)	AluJb|SINE|Alu	34405	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
25090	chr10	3875101	3876350	+	0	NA	Intergenic	MIRb|SINE|MIR	41775	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
147097	chr20	53867051	53868230	+	0	NA	Intergenic	Intergenic	8069	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
40284	chr11	63848301	63848700	+	0	NA	intron (NM_004954, intron 1 of 16)	AluSc8|SINE|Alu	9390	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
221050	chr8	116767871	116768430	+	0	NA	intron (NM_032334, intron 1 of 2)	intron (NM_032334, intron 1 of 2)	1626	NM_032334	84294		NM_032334	ENSG00000147679	UTP23	C8orf53	UTP23 small subunit processome component	protein-coding
35788	chr11	2173171	2173730	+	0	NA	TTS (NR_039834)	TTS (NR_039834)	387	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
149706	chr21	34023801	34024000	+	0	NA	Intergenic	MIRc|SINE|MIR	47518	NR_134561	101928126		NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
101504	chr17	67715071	67715430	+	0	NA	Intergenic	Intergenic	-2583	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
34463	chr10	132447301	132448180	+	0	NA	non-coding (NR_149317, exon 3 of 3)	non-coding (NR_149317, exon 3 of 3)	2551	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
205222	chr7	7967851	7971480	+	0	NA	promoter-TSS (NR_110018)	promoter-TSS (NR_110018)	869	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
1257	chr1	2299701	2302630	+	0	NA	intron (NM_003036, intron 1 of 6)	CpG	51496	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
235588	chrX	47572601	47572800	+	0	NA	TTS (NM_001654)	TTS (NM_001654)	-9736	NM_003254	7076		NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP|TIMP-1	TIMP metallopeptidase inhibitor 1	protein-coding
193418	chr6	30453651	30454380	+	0	NA	Intergenic	Intergenic	-35494	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
74030	chr15	52233551	52233850	+	0	NA	intron (NM_018728, intron 23 of 40)	intron (NM_018728, intron 23 of 40)	-42308	NM_016194	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
125673	chr2	20225201	20225680	+	0	NA	promoter-TSS (NM_002997)	promoter-TSS (NM_002997)	-7	NM_001006946	6382		NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
238503	chrX	153643251	153643550	+	0	NA	intron (NM_001395, intron 1 of 3)	CpG	959	NM_001395	1852		NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
223303	chr8	143803721	143803980	+	0	NA	exon (NM_015356, exon 23 of 36)	exon (NM_015356, exon 23 of 36)	9192	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
158097	chr22	50001551	50001850	+	0	NA	intron (NM_001371417, intron 2 of 14)	intron (NM_001371417, intron 2 of 14)	11065	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
118017	chr19	34179071	34179230	+	0	NA	intron (NM_001384434, intron 1 of 9).2	intron (NM_001384434, intron 1 of 9).2	6646	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
114957	chr19	13995301	13995580	+	0	NA	intron (NM_002918, intron 1 of 20)	intron (NM_002918, intron 1 of 20)	10880	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
19908	chr1	184051051	184052400	+	0	NA	promoter-TSS (NM_001127394)	promoter-TSS (NM_001127394)	-5	NM_001127394	116461		NM_052965	ENSG00000198860	TSEN15	C1orf19|PCH2F|sen15	tRNA splicing endonuclease subunit 15	protein-coding
27963	chr10	42242471	42242630	+	0	NA	Intergenic	CpG	125495	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
202784	chr6	159094251	159095050	+	0	NA	Intergenic	Intergenic	-49498	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
166482	chr3	114293601	114294310	+	0	NA	promoter-TSS (NM_173799)	promoter-TSS (NM_173799)	-73	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
131661	chr2	97660651	97660750	+	0	NA	intron (NM_005735, intron 2 of 10)	intron (NM_005735, intron 2 of 10)	3344	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
211330	chr7	104825171	104825530	+	0	NA	intron (NM_199000, intron 2 of 2)	intron (NM_199000, intron 2 of 2)	-21258	NR_034142	645591		NR_034141	ENSG00000226869	LHFPL3-AS1	-	LHFPL3 antisense RNA 1	ncRNA
193685	chr6	31097301	31098050	+	0	NA	Intergenic	MER50|LTR|ERV1	14900	NM_014070	29113		NM_014070	ENSG00000204542	C6orf15	STG	chromosome 6 open reading frame 15	protein-coding
23074	chr1	226643891	226644590	+	0	NA	intron (NM_002221, intron 4 of 7)	intron (NM_002221, intron 4 of 7)	30828	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
52182	chr12	54324351	54325750	+	0	NA	promoter-TSS (NR_073424)	promoter-TSS (NR_073424)	-81	NR_073424	22818		NM_016057	ENSG00000111481	COPZ1	CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP	COPI coat complex subunit zeta 1	protein-coding
72712	chr15	38658401	38658600	+	0	NA	Intergenic	Intergenic	-38098	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
184439	chr5	99034471	99034630	+	0	NA	Intergenic	Intergenic	105416	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
51586	chr12	52641621	52641880	+	0	NA	Intergenic	L2b|LINE|L2	10461	NM_000423	3849		NM_000423	ENSG00000172867	KRT2	CK-2e|K2e|KRT2A|KRT2E|KRTE	keratin 2	protein-coding
24338	chr1	239587101	239587500	+	0	NA	intron (NM_001375982, intron 3 of 6)	intron (NM_001375982, intron 3 of 6)	-41773	NM_000740	1131		NM_000740	ENSG00000133019	CHRM3	EGBRS|HM3|PBS|m3AChR	cholinergic receptor muscarinic 3	protein-coding
224980	chr9	33095851	33095950	+	0	NA	Intergenic	AluSx|SINE|Alu	-12792	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
114607	chr19	12960551	12961100	+	0	NA	Intergenic	AluJo|SINE|Alu	-3602	NM_052850	90480		NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1|mL64	GADD45G interacting protein 1	protein-coding
40693	chr11	64774671	64776000	+	0	NA	intron (NM_201995, intron 2 of 13)	intron (NM_201995, intron 2 of 13)	2426	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
217834	chr8	37694721	37696150	+	0	NA	promoter-TSS (NM_025069)	promoter-TSS (NM_025069)	-347	NM_025069	80139		NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
135924	chr2	171706171	171706430	+	0	NA	intron (NM_001320882, intron 3 of 16)	intron (NM_001320882, intron 3 of 16)	18545	NM_001320883	1781		NM_001378	ENSG00000077380	DYNC1I2	DIC74|DNCI2|IC2|NEDMIBA	dynein cytoplasmic 1 intermediate chain 2	protein-coding
111087	chr19	3183021	3183730	+	0	NA	Intergenic	AluSx|SINE|Alu	-2555	NM_001321463	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
132713	chr2	109046921	109047280	+	0	NA	Intergenic	Intergenic	-57880	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
202683	chr6	158796301	158796980	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-21339	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
100706	chr17	63839171	63840550	+	0	NA	intron (NM_001098426, intron 1 of 12)	AluSg7|SINE|Alu	-1132	NM_001330440	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
39227	chr11	57647921	57648630	+	0	NA	intron (NM_001363487, intron 1 of 5)	intron (NM_001363487, intron 1 of 5)	1637	NM_145008	219539		NM_145008	ENSG00000166793	YPEL4	-	yippee like 4	protein-coding
70930	chr14	104391671	104392430	+	0	NA	Intergenic	Intergenic	168466	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
134260	chr2	135546421	135546680	+	0	NA	intron (NM_001378107, intron 1 of 26)	intron (NM_001378107, intron 1 of 26)	15066	NM_001378107	23518		NM_015361	ENSG00000048991	R3HDM1	R3HDM	R3H domain containing 1	protein-coding
208761	chr7	73537421	73537680	+	0	NA	intron (NM_001707, intron 5 of 5)	intron (NM_001707, intron 5 of 5)	-15257	NM_032408	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
13845	chr1	117644351	117645180	+	0	NA	Intergenic	Intergenic	38717	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
222762	chr8	141507901	141508250	+	0	NA	promoter-TSS (NR_160399)	promoter-TSS (NR_160399)	-845	NR_102363	389690		NM_207414	ENSG00000226807	MROH5	-	maestro heat like repeat family member 5 (gene/pseudogene)	protein-coding
125774	chr2	23649871	23650030	+	0	NA	intron (NM_052920, intron 5 of 13)	intron (NM_052920, intron 5 of 13)	264771	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
196775	chr6	45583821	45584730	+	0	NA	Intergenic	Intergenic	162000	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
7999	chr1	37995771	37997250	+	0	NA	TTS (NM_004468)	TTS (NM_004468)	-6488	NM_006802	10946		NM_006802	ENSG00000183431	SF3A3	PRP9|PRPF9|SAP61|SF3a60	splicing factor 3a subunit 3	protein-coding
59665	chr13	28636771	28637350	+	0	NA	Intergenic	Intergenic	-22070	NM_015932	51371		NM_015932	ENSG00000132963	POMP	C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1	proteasome maturation protein	protein-coding
79417	chr16	687221	687600	+	0	NA	exon (NM_032259, exon 3 of 9)	exon (NM_032259, exon 3 of 9)	2988	NM_032259	84219		NM_032259	ENSG00000127580	WDR24	C16orf21|JFP7	WD repeat domain 24	protein-coding
211284	chr7	103073251	103073580	+	0	NA	intron (NM_001111038, intron 1 of 18)	AluJr|SINE|Alu	1153	NM_145032	222235		NM_145032	ENSG00000161040	FBXL13	CFAP169|DRC6|Fbl13	F-box and leucine rich repeat protein 13	protein-coding
132614	chr2	108609051	108609830	+	0	NA	intron (NM_001193482, intron 1 of 9)	intron (NM_001193482, intron 1 of 9)	2293	NM_001193482	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
220832	chr8	102859651	102859950	+	0	NA	intron (NM_148174, intron 1 of 11)	AluSz6|SINE|Alu	4363	NM_001301668	51582		NM_015878	ENSG00000155096	AZIN1	AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
38106	chr11	35223521	35223780	+	0	NA	TTS (NM_001202557)	TTS (NM_001202557)	60700	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
191154	chr6	4773971	4774150	+	0	NA	intron (NM_001368125, intron 3 of 8)	intron (NM_001368125, intron 3 of 8)	-2344	NM_001368127	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
78979	chr15	101646671	101646930	+	0	NA	exon (NM_078474, exon 4 of 6)	exon (NM_078474, exon 4 of 6)	5581	NM_078474	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
5063	chr1	24646201	24646550	+	0	NA	intron (NR_159382, intron 2 of 17)	AluY|SINE|Alu	2796	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
180396	chr5	10283971	10284350	+	0	NA	intron (NM_138809, intron 4 of 5)	intron (NM_138809, intron 4 of 5)	23742	NM_138809	134147		NM_138809	ENSG00000164237	CMBL	JS-1	carboxymethylenebutenolidase homolog	protein-coding
131805	chr2	98580621	98580900	+	0	NA	intron (NM_001134224, intron 25 of 25)	intron (NM_001134224, intron 25 of 25)	27752	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
35123	chr11	692671	693430	+	0	NA	intron (NM_001367390, intron 1 of 11)	intron (NM_001367390, intron 1 of 11)	2172	NM_021008	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
54268	chr12	88141571	88142870	+	0	NA	promoter-TSS (NM_001366574)	promoter-TSS (NM_001366574)	-87	NM_001366583	160418		NM_181783	ENSG00000139324	TMTC3	LIS8|SMILE	transmembrane O-mannosyltransferase targeting cadherins 3	protein-coding
218214	chr8	42021871	42022030	+	0	NA	intron (NM_001305878, intron 2 of 13)	(AAAAC)n|Simple_repeat|Simple_repeat	-29800	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
154872	chr22	37135451	37135950	+	0	NA	intron (NM_000878, intron 7 of 9)	intron (NM_000878, intron 7 of 9)	14216	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
208490	chr7	67300721	67301200	+	0	NA	intron (NR_022007, intron 1 of 4)	intron (NR_022007, intron 1 of 4)	1482	NR_046297	5382		NR_022007	ENSG00000291154	PMS2P4	PMS2L4|PMS6	PMS1 homolog 2, mismatch repair system component pseudogene 4	pseudo
59690	chr13	29531651	29531750	+	0	NA	intron (NM_003045, intron 4 of 12)	AluSz6|SINE|Alu	-43950	NR_046378	100874107		NR_046378		MTUS2-AS1	-	MTUS2 antisense RNA 1	ncRNA
99604	chr17	50541721	50543080	+	0	NA	3' UTR (NM_017957, exon 10 of 10)	3' UTR (NM_017957, exon 10 of 10)	-3646	NR_135675	105371824		NR_135675	ENSG00000250286	LOC105371824	-	uncharacterized LOC105371824	ncRNA
123902	chr19	55340801	55341850	+	0	NA	intron (NM_032701, intron 1 of 8)	intron (NM_032701, intron 1 of 8)	1449	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
75959	chr15	70477701	70478030	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	28063	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
71951	chr15	23074071	23074230	+	0	NA	Intergenic	Intergenic	-34477	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
93811	chr17	20646771	20646950	+	0	NA	Intergenic	Intergenic	-13609	NR_146887	105371582		NR_146887	ENSG00000227685	LINC02088	-	long intergenic non-protein coding RNA 2088	ncRNA
199245	chr6	111835751	111836050	+	0	NA	intron (NM_002037, intron 2 of 13)	LTR10D|LTR|ERV1	37171	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
94661	chr17	30320751	30320850	+	0	NA	intron (NM_206832, intron 4 of 6)	FAM|SINE|Alu	13257	NM_001319942	388364		NM_206832	ENSG00000182271	TMIGD1	TMIGD|UNQ9372	transmembrane and immunoglobulin domain containing 1	protein-coding
105947	chr18	3624201	3624400	+	0	NA	intron (NM_001242765, intron 4 of 8)	intron (NM_001242765, intron 4 of 8)	20563	NR_119377	84777		NM_032691		DLGAP1-AS2	DLPAP1-AS2	DLGAP1 antisense RNA 2	ncRNA
17651	chr1	157196971	157197230	+	0	NA	Intergenic	Intergenic	-58509	NM_005240	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
235949	chrX	53312971	53313350	+	0	NA	intron (NM_001111125, intron 1 of 14)	intron (NM_001111125, intron 1 of 14)	8190	NM_001111125	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
60765	chr13	45048871	45049230	+	0	NA	Intergenic	Intergenic	-57229	NR_120424	101929259		NR_120424		LOC101929259	-	uncharacterized LOC101929259	ncRNA
165454	chr3	98573271	98573780	+	0	NA	Intergenic	(TTTCTCC)n|Simple_repeat|Simple_repeat	20086	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
123652	chr19	54771121	54771380	+	0	NA	promoter-TSS (NR_110737)	promoter-TSS (NR_110737)	-186	NR_110737	101928804		NR_110737		LOC101928804	-	uncharacterized LOC101928804	ncRNA
93118	chr17	17694151	17695700	+	0	NA	intron (NM_030665, intron 1 of 5)	CpG	13467	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
180368	chr5	7279751	7279850	+	0	NA	Intergenic	AluY|SINE|Alu	-10446	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
119920	chr19	41746571	41746950	+	0	NA	Intergenic	Intergenic	-8770	NM_002483	4680		NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA|NCA-50/90	CEA cell adhesion molecule 6	protein-coding
6973	chr1	31786771	31787150	+	0	NA	Intergenic	Intergenic	-22620	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
72224	chr15	30194721	30195100	+	0	NA	Intergenic	Intergenic	-1126	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
118230	chr19	35204901	35205730	+	0	NA	Intergenic	L2b|LINE|L2	23410	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
32414	chr10	102460721	102463130	+	0	NA	intron (NM_024789, intron 1 of 9)	MER5B|DNA|hAT-Charlie	530	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
132136	chr2	101715971	101716700	+	0	NA	intron (NM_001384572, intron 1 of 29)	AluY|SINE|Alu	18070	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
101165	chr17	65115851	65116430	+	0	NA	Intergenic	Intergenic	15328	NR_110801	100507002		NR_110801		LOC100507002	-	uncharacterized LOC100507002	ncRNA
60790	chr13	45319771	45320130	+	0	NA	Intergenic	Intergenic	16497	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
14321	chr1	143884271	143885780	+	0	NA	intron (NR_160914, intron 1 of 2)	CpG	10282	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
66133	chr14	60165001	60165880	+	0	NA	promoter-TSS (NM_016029)	promoter-TSS (NM_016029)	-42	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
213778	chr7	140701501	140701850	+	0	NA	intron (NM_004546, intron 1 of 3)	AluSx|SINE|Alu	-4598	NR_024454	100134713		NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
186187	chr5	134213021	134213280	+	0	NA	intron (NM_002715, intron 1 of 6)	Tigger1|DNA|TcMar-Tigger	12404	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
232630	chr9	136452201	136453030	+	0	NA	intron (NM_014866, intron 22 of 31)	AluSz|SINE|Alu	-12770	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
112361	chr19	5964871	5965830	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	12790	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
177062	chr4	108034651	108034950	+	0	NA	3' UTR (NM_005327, exon 8 of 8)	3' UTR (NM_005327, exon 8 of 8)	30136	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
135042	chr2	156329901	156331280	+	0	NA	intron (NM_006186, intron 2 of 7)	intron (NM_006186, intron 2 of 7)	2131	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
111314	chr19	3615001	3615430	+	0	NA	intron (NM_021231, intron 6 of 10)	intron (NM_021231, intron 6 of 10)	7968	NR_038865	404665		NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	ncRNA
151394	chr21	45979951	45980250	+	0	NA	Intergenic	AluJb|SINE|Alu	-1670	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
56407	chr12	113261651	113262530	+	0	NA	intron (NM_001143819, intron 4 of 28)	intron (NM_001143819, intron 4 of 28)	17722	NM_001351347	53373		NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding
216688	chr8	22161271	22161630	+	0	NA	promoter-TSS (NM_003018)	promoter-TSS (NM_003018)	-348	NM_001317778	6440		NM_003018	ENSG00000168484	SFTPC	BRICD6|PSP-C|SFTP2|SMDP2|SP-C|SP5	surfactant protein C	protein-coding
159408	chr3	13482371	13482850	+	0	NA	intron (NM_024827, intron 2 of 9)	AluJr|SINE|Alu	2304	NM_001136041	79885		NM_024827	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
223009	chr8	143280971	143282450	+	0	NA	promoter-TSS (NR_120683)	promoter-TSS (NR_120683)	-10	NR_120682	100507316		NR_120682	ENSG00000253716	MINCR	LINC01604	MYC-induced long non-coding RNA	ncRNA
163103	chr3	50114071	50114430	+	0	NA	exon (NM_005778, exon 20 of 25)	exon (NM_005778, exon 20 of 25)	-13262	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
147891	chr20	62879971	62880130	+	0	NA	exon (NM_033081, exon 16 of 16)	exon (NM_033081, exon 16 of 16)	2853	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
126521	chr2	28452051	28452930	+	0	NA	Intergenic	Intergenic	-43570	NM_153021	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
216415	chr8	18957251	18957950	+	0	NA	intron (NM_015310, intron 1 of 15)	intron (NM_015310, intron 1 of 15)	56103	NM_015310	23362		NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
16892	chr1	155861721	155862300	+	0	NA	intron (NM_152280, intron 1 of 3)	intron (NM_152280, intron 1 of 3)	2443	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
31616	chr10	97374371	97374730	+	0	NA	intron (NM_015179, intron 15 of 33)	AluY|SINE|Alu	26790	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
135199	chr2	158901271	158901730	+	0	NA	Intergenic	Intergenic	-67134	NM_001350063	85461		NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
168828	chr3	152243121	152244700	+	0	NA	5' UTR (NM_001376845, exon 1 of 9)	5' UTR (NM_001376845, exon 1 of 9)	278	NM_001376819	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
21707	chr1	206741321	206741930	+	0	NA	Intergenic	Intergenic	28978	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
205197	chr7	7719321	7719950	+	0	NA	intron (NM_001302350, intron 3 of 4)	intron (NM_001302350, intron 3 of 4)	-1028	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
117810	chr19	29944801	29945650	+	0	NA	intron (NR_045557, intron 1 of 9)	MER105|DNA|hAT-Charlie	2986	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
157890	chr22	49751651	49752080	+	0	NA	Intergenic	Intergenic	72466	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
16923	chr1	155896871	155897030	+	0	NA	TTS (NM_006912)	TTS (NM_006912)	13968	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
118384	chr19	35727571	35728330	+	0	NA	exon (NM_014727, exon 18 of 37)	exon (NM_014727, exon 18 of 37)	9947	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
67863	chr14	74242071	74243250	+	0	NA	intron (NM_182894, intron 2 of 4)	intron (NM_182894, intron 2 of 4)	3211	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
207036	chr7	38932601	38932800	+	0	NA	Intergenic	UCON4|Unknown|Unknown	-23500	NM_080631	27072		NM_014396	ENSG00000006715	VPS41	HVPS41|HVSP41|SCAR29|hVps41p	VPS41 subunit of HOPS complex	protein-coding
185335	chr5	126816421	126817080	+	0	NA	intron (NR_134488, intron 6 of 11)	L1MC3|LINE|L1	39614	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
218800	chr8	59035701	59036050	+	0	NA	intron (NM_014729, intron 1 of 8)	MIR|SINE|MIR	83272	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
98511	chr17	47502201	47503000	+	0	NA	Intergenic	Intergenic	-9980	NR_033934	653479		NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
147397	chr20	58701221	58701480	+	0	NA	intron (NM_001204872, intron 7 of 12)	intron (NM_001204872, intron 7 of 12)	8550	NM_024663	79716		NM_024663	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase like 1	protein-coding
202298	chr6	157219051	157219930	+	0	NA	Intergenic	Intergenic	104029	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
71248	chr14	105195301	105195840	+	0	NA	Intergenic	Intergenic	-14247	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
156383	chr22	41099851	41100280	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluJr4|SINE|Alu	7473	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
38939	chr11	47509221	47509800	+	0	NA	intron (NM_001376409, intron 1 of 15)	AluJo|SINE|Alu	14321	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
83314	chr16	24575051	24575350	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-35005	NM_001351850	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
47953	chr12	6854001	6854400	+	0	NA	intron (NM_001382588, intron 1 of 18)	intron (NM_001382588, intron 1 of 18)	2050	NR_168456	8078		NM_003481	ENSG00000111667	USP5	ISOT	ubiquitin specific peptidase 5	protein-coding
94879	chr17	31529621	31530080	+	0	NA	intron (NM_001346748, intron 11 of 12)	intron (NM_001346748, intron 11 of 12)	-5033	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
42618	chr11	72218051	72218350	+	0	NA	intron (NM_001113535, intron 1 of 4)	intron (NM_001113535, intron 1 of 4)	1406	NM_000803	2350		NM_000803	ENSG00000165457	FOLR2	BETA-HFR|FBP|FBP/PL-1|FOLR1|FR-BETA|FR-P3|FRbeta	folate receptor beta	protein-coding
95846	chr17	38819021	38819280	+	0	NA	intron (NR_073428, intron 2 of 10)	AluJo|SINE|Alu	6171	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
11467	chr1	89992521	89992780	+	0	NA	TTS (NR_002830)	TTS (NR_002830)	2316	NR_002830	492303		NR_002830		GEMIN8P4	-	gem nuclear organelle associated protein 8 pseudogene 4	pseudo
90200	chr17	416351	417330	+	0	NA	Intergenic	Intergenic	-2817	NR_136407	105371430		NR_136407	ENSG00000241525	LOC105371430	-	uncharacterized LOC105371430	ncRNA
57915	chr12	123483401	123484350	+	0	NA	intron (NM_001319243, intron 6 of 7)	intron (NM_001319243, intron 6 of 7)	24171	NM_180699	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
30970	chr10	87868421	87868780	+	0	NA	intron (NM_001304717, intron 2 of 9)	intron (NM_001304717, intron 2 of 9)	4975	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
104636	chr17	81443401	81444080	+	0	NA	intron (NM_001377448, intron 5 of 27)	intron (NM_001377448, intron 5 of 27)	7448	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
153374	chr22	24523071	24523630	+	0	NA	intron (NM_016327, intron 8 of 9)	intron (NM_016327, intron 8 of 9)	28018	NM_016327	51733		NM_016327	ENSG00000100024	UPB1	BUP1	beta-ureidopropionase 1	protein-coding
145687	chr20	45005421	45005680	+	0	NA	intron (NM_006282, intron 9 of 10)	AluY|SINE|Alu	39038	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
38288	chr11	43351521	43352000	+	0	NA	Intergenic	L1PA2|LINE|L1	-7160	NM_001376527	55761		NM_018259	ENSG00000052841	TTC17	-	tetratricopeptide repeat domain 17	protein-coding
204130	chr7	2347921	2348800	+	0	NA	Intergenic	AluY|SINE|Alu	-5726	NM_001362792	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
110737	chr19	2326201	2326430	+	0	NA	intron (NM_016199, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	2271	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
58483	chr12	132152051	132152500	+	0	NA	intron (NM_024078, intron 14 of 14)	intron (NM_024078, intron 14 of 14)	7818	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
26980	chr10	26773121	26773580	+	0	NA	intron (NR_145410, intron 3 of 11)	AluSz|SINE|Alu	75649	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
121429	chr19	47023121	47024550	+	0	NA	intron (NM_002517, intron 3 of 11)	AluSx3|SINE|Alu	3998	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
188042	chr5	149733301	149733500	+	0	NA	TTS (NR_029870)	TTS (NR_029870)	575	NR_029870	494327		NR_029870	ENSG00000199047	MIR378A	MIR378|MIRN378|hsa-mir-378|hsa-mir-378a|miRNA378	microRNA 378a	ncRNA
145719	chr20	45040771	45040930	+	0	NA	intron (NM_006282, intron 10 of 10)	L1MC5|LINE|L1	60277	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
211798	chr7	107856871	107857630	+	0	NA	Intergenic	Intergenic	-33857	NM_001289751	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
115469	chr19	15356051	15356550	+	0	NA	intron (NM_005858, intron 13 of 13)	AluY|SINE|Alu	23487	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
33649	chr10	119721951	119722680	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-3732	NM_001243195	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
129171	chr2	68153921	68154180	+	0	NA	intron (NR_046234, intron 1 of 6)	AluSc5|SINE|Alu	3477	NM_001256476	116143		NM_138458	ENSG00000243667	DNAAF10	WDR92	dynein axonemal assembly factor 10	protein-coding
171550	chr3	196863001	196863250	+	0	NA	Intergenic	LTR12|LTR|ERV1	-4731	NM_001308045	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
177178	chr4	108158351	108158450	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	8397	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
106433	chr18	13597101	13597300	+	0	NA	intron (NM_001378099, intron 4 of 6)	L1M4b|LINE|L1	-13914	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
144522	chr20	35705571	35706180	+	0	NA	intron (NM_184234, intron 14 of 16)	intron (NM_184234, intron 14 of 16)	6470	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
1533	chr1	3284051	3284150	+	0	NA	intron (NM_199454, intron 3 of 16)	intron (NM_199454, intron 3 of 16)	156125	NR_036215	100422968		NR_036215	ENSG00000283572	MIR4251	-	microRNA 4251	ncRNA
82057	chr16	13385471	13385630	+	0	NA	Intergenic	L1MD2|LINE|L1	483952	NM_001145205	729993		NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
46621	chr11	128621201	128621400	+	0	NA	Intergenic	Intergenic	-33742	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
142342	chr20	3742951	3743450	+	0	NA	intron (NM_001197327, intron 4 of 12)	AluJr|SINE|Alu	10515	NM_001197327	116835		NM_052970	ENSG00000132622	HSPA12B	C20orf60	heat shock protein family A (Hsp70) member 12B	protein-coding
188199	chr5	150670301	150670680	+	0	NA	exon (NM_001122853, exon 3 of 7)	exon (NM_001122853, exon 3 of 7)	9239	NM_001122853	91977		NM_133371	ENSG00000164591	MYOZ3	CS-3|CS3|FATZ-3|FRP3	myozenin 3	protein-coding
25842	chr10	11224501	11224700	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	59570	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
112867	chr19	7599071	7599480	+	0	NA	intron (NM_020902, intron 1 of 16)	(CCAC)n|Simple_repeat|Simple_repeat	3412	NM_001080429	57662		NM_020902	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA|PPP1R80	calmodulin regulated spectrin associated protein family member 3	protein-coding
166995	chr3	125921451	125922250	+	0	NA	intron (NR_024251, intron 3 of 4)	intron (NR_024251, intron 3 of 4)	5249	NR_024250	100125556		NR_024250	ENSG00000291071	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
210105	chr7	97879771	97879930	+	0	NA	intron (NM_001352496, intron 1 of 13)	intron (NM_001352496, intron 1 of 13)	-7308	NM_183356	440		NM_001673	ENSG00000070669	ASNS	ASNSD|TS11	asparagine synthetase (glutamine-hydrolyzing)	protein-coding
34070	chr10	124947051	124947350	+	0	NA	intron (NM_017580, intron 1 of 8)	intron (NM_017580, intron 1 of 8)	5077	NM_017580	54764		NM_017580	ENSG00000019995	ZRANB1	TRABID	zinc finger RANBP2-type containing 1	protein-coding
123535	chr19	54352221	54352480	+	0	NA	non-coding (NR_110279, exon 10 of 10).2	non-coding (NR_110279, exon 10 of 10).2	12581	NR_110279	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
138335	chr2	203824021	203824280	+	0	NA	Intergenic	Intergenic	-43621	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
165040	chr3	71428801	71429850	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	112764	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
29613	chr10	71760401	71762630	+	0	NA	intron (NM_022153, intron 2 of 6)	intron (NM_022153, intron 2 of 6)	12005	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
216293	chr8	12592551	12592980	+	0	NA	intron (NR_047662, intron 6 of 8)	intron (NR_047662, intron 6 of 8)	72846	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
173509	chr4	9601651	9602050	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-45534	NR_031688	100302277		NR_031688	ENSG00000221275	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2	microRNA 548i-2	ncRNA
211766	chr7	107210151	107210450	+	0	NA	3' UTR (NM_001161520, exon 21 of 21)	3' UTR (NM_001161520, exon 21 of 21)	41297	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
225726	chr9	37013251	37013400	+	0	NA	intron (NM_001280555, intron 2 of 7)	MER102c|DNA|hAT-Charlie	20943	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
65942	chr14	55438251	55438350	+	0	NA	intron (NM_199047, intron 1 of 6)	intron (NM_199047, intron 1 of 6)	2245	NM_199047	387332		NM_199047	ENSG00000182521	TBPL2	TBP2|TRF3	TATA-box binding protein like 2	protein-coding
46570	chr11	128499751	128500200	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	22335	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
142193	chr20	2941251	2941750	+	0	NA	intron (NM_001385318, intron 2 of 18)	intron (NM_001385318, intron 2 of 18)	68019	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
227562	chr9	92136901	92137480	+	0	NA	intron (NR_015444, intron 10 of 12)	(GAGGAGT)n|Simple_repeat|Simple_repeat	-4277	NR_027341	158314		NR_027341		LINC00475	C9orf44	long intergenic non-protein coding RNA 475	ncRNA
114365	chr19	12400801	12401930	+	0	NA	promoter-TSS (NM_001080821)	promoter-TSS (NM_001080821)	-91	NM_001322498	90576		NM_203381	ENSG00000196466	ZNF799	HIT-40|HIT40|ZNF842	zinc finger protein 799	protein-coding
127251	chr2	38694471	38694630	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	28436	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
97244	chr17	42978801	42979180	+	0	NA	intron (NM_001142653, intron 3 of 5)	AluSp|SINE|Alu	1013	NM_025267	100885850		NM_025267	ENSG00000108825	PTGES3L-AARSD1	-	PTGES3L-AARSD1 readthrough	protein-coding
117204	chr19	19390621	19391330	+	0	NA	intron (NM_001384535, intron 1 of 10)	intron (NM_001384535, intron 1 of 10)	5132	NM_001384518	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
179258	chr4	175637411	175637550	+	0	NA	intron (NM_005277, intron 7 of 7)	(TA)n|Simple_repeat|Simple_repeat	150196	NM_001261448	2823		NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
146209	chr20	48786021	48786600	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	41689	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
136480	chr2	177219371	177219830	+	0	NA	non-coding (NR_138470, exon 11 of 12)	non-coding (NR_138470, exon 11 of 12)	6806	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
66880	chr14	65095621	65096230	+	0	NA	intron (NR_073137, intron 1 of 3)	intron (NR_073137, intron 1 of 3)	6007	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
237885	chrX	131633571	131633800	+	0	NA	Intergenic	Intergenic	89611	NM_001004486	347468		NM_001004486	ENSG00000171054	OR13H1	ORX1	olfactory receptor family 13 subfamily H member 1	protein-coding
119452	chr19	40412721	40414280	+	0	NA	promoter-TSS (NM_181882)	promoter-TSS (NM_181882)	-122	NM_181882	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
212109	chr7	116212321	116213030	+	0	NA	intron (NM_015641, intron 1 of 6)	intron (NM_015641, intron 1 of 6)	2136	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
189234	chr5	171957321	171958280	+	0	NA	intron (NM_012300, intron 1 of 12)	intron (NM_012300, intron 1 of 12)	48838	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
109818	chr19	1167521	1168580	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	6218	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
159064	chr3	11705271	11705430	+	0	NA	intron (NM_014667, intron 1 of 5)	CpG	15189	NM_001284390	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
10991	chr1	84502921	84503280	+	0	NA	intron (NM_005274, intron 2 of 3)	intron (NM_005274, intron 2 of 3)	-3286	NM_001310156	100505741		NM_022354	ENSG00000122432	SPATA1	SP-2|SPAP1	spermatogenesis associated 1	protein-coding
188924	chr5	160423051	160423800	+	0	NA	intron (NM_001282382, intron 2 of 4)	intron (NM_001282382, intron 2 of 4)	1515	NM_001282382	9232		NM_004219	ENSG00000164611	PTTG1	EAP1|ECRAR|HPTTG|PTTG|TUTR1	PTTG1 regulator of sister chromatid separation, securin	protein-coding
156089	chr22	40056871	40057580	+	0	NA	intron (NM_001024843, intron 1 of 23)	MamRep4096|DNA|hAT-Tip100	12408	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
234183	chrX	11791251	11791350	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-31139	NM_001368395	9758		NM_014728	ENSG00000169933	FRMPD4	MRX104|PDZD10|PDZK10|XLID104	FERM and PDZ domain containing 4	protein-coding
126345	chr2	27391151	27392330	+	0	NA	TTS (NR_002201)	TTS (NR_002201)	1836	NR_002201	2498		NR_002201		FTH1P3	FTHL3|FTHL3P	ferritin heavy chain 1 pseudogene 3	pseudo
227475	chr9	91147471	91148400	+	0	NA	intron (NR_135306, intron 2 of 2)	intron (NR_135306, intron 2 of 2)	28873	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
210564	chr7	100348321	100348900	+	0	NA	intron (NR_036569, intron 4 of 17)	AluY|SINE|Alu	-3708	NR_103728	101752334		NR_103728		PVRIG2P	-	PVR related immunoglobulin domain containing 2, pseudogene	pseudo
202266	chr6	157019771	157020080	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-16502	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
18545	chr1	162413821	162414080	+	0	NA	Intergenic	L1MC5a|LINE|L1	-1814	NM_053282	117157		NM_053282	ENSG00000198574	SH2D1B	EAT2	SH2 domain containing 1B	protein-coding
22601	chr1	223240951	223241280	+	0	NA	intron (NM_001037175, intron 5 of 5)	L1MC1|LINE|L1	-97867	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
5840	chr1	26707751	26707850	+	0	NA	intron (NM_139135, intron 1 of 19)	MIR|SINE|MIR	11785	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
207584	chr7	44955771	44956130	+	0	NA	Intergenic	Intergenic	23065	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
195344	chr6	36627601	36628300	+	0	NA	Intergenic	Intergenic	-5438	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
231235	chr9	129974201	129974400	+	0	NA	intron (NM_001363755, intron 4 of 15)	intron (NM_001363755, intron 4 of 15)	68889	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
128556	chr2	60886871	60887730	+	0	NA	intron (NM_001291746, intron 1 of 9)	intron (NM_001291746, intron 1 of 9)	5726	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133356	chr2	114684401	114684600	+	0	NA	intron (NM_001321908, intron 2 of 25)	intron (NM_001321908, intron 2 of 25)	149048	NR_132105	101927591		NR_132105	ENSG00000231538	DPP10-AS3	-	DPP10 antisense RNA 3	ncRNA
126870	chr2	32038651	32038750	+	0	NA	intron (NM_001321210, intron 3 of 5)	AluSx1|SINE|Alu	1105	NM_001321209	84661		NM_032574	ENSG00000162961	DPY30	Cps25|HDPY-30|Saf19	dpy-30 histone methyltransferase complex regulatory subunit	protein-coding
180431	chr5	10445221	10446050	+	0	NA	intron (NM_031916, intron 1 of 4)	intron (NM_031916, intron 1 of 4)	3756	NM_031916	83853		NM_031916	ENSG00000145491	ROPN1L	ASP|LINC01513|RSPH11|TCONS_00009352	rhophilin associated tail protein 1 like	protein-coding
120202	chr19	42288451	42288550	+	0	NA	intron (NM_001379484, intron 6 of 19)	intron (NM_001379484, intron 6 of 19)	4031	NM_015125	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
50294	chr12	46382851	46384330	+	0	NA	promoter-TSS (NR_125377)	promoter-TSS (NR_125377)	-86	NR_125380	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
112438	chr19	6363801	6364750	+	0	NA	intron (NM_006012, intron 3 of 5)	AluY|SINE|Alu	2744	NM_006012	8192		NM_006012	ENSG00000125656	CLPP	DFNB81|PRLTS3	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding
182890	chr5	70051751	70052230	+	0	NA	intron (NM_022874, intron 1 of 7)	AluSx1|SINE|Alu	2321	NM_000344	6606		NM_000344	ENSG00000172062	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
104114	chr17	80289871	80290230	+	0	NA	intron (NM_020954, intron 6 of 16)	intron (NM_020954, intron 6 of 16)	29198	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
221444	chr8	124196921	124197180	+	0	NA	intron (NR_125420, intron 2 of 2)	intron (NR_125420, intron 2 of 2)	-25528	NR_103547	157376		NM_182525	ENSG00000253868	FER1L6-AS2	C8orf78	FER1L6 antisense RNA 2	ncRNA
137513	chr2	197187371	197187730	+	0	NA	intron (NM_153697, intron 1 of 9)	MLT1B|LTR|ERVL-MaLR	-10441	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
53709	chr12	68587101	68588100	+	0	NA	Intergenic	Intergenic	-23299	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
235976	chrX	53716321	53717350	+	0	NA	Intergenic	Intergenic	-30116	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
10782	chr1	77435001	77435500	+	0	NA	intron (NM_174858, intron 8 of 13)	intron (NM_174858, intron 8 of 13)	152163	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
164262	chr3	57558871	57559430	+	0	NA	intron (NM_001322177, intron 1 of 1)	AluSc8|SINE|Alu	2876	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
189380	chr5	172714571	172715400	+	0	NA	Intergenic	Intergenic	-40518	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
107928	chr18	57633371	57633530	+	0	NA	intron (NR_164148, intron 1 of 2)	SVA_D|Retroposon|SVA	3119	NR_164148	100505549		NR_164148	ENSG00000267040	ATP8B1-AS1	-	ATP8B1 antisense RNA 1	ncRNA
217007	chr8	23171001	23171200	+	0	NA	Intergenic	AluY|SINE|Alu	-7073	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
57727	chr12	122882951	122883730	+	0	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	12784	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
172232	chr4	1335551	1336130	+	0	NA	intron (NR_123716, intron 4 of 6)	intron (NR_123716, intron 4 of 6)	-11368	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
14091	chr1	120890671	120890830	+	0	NA	TTS (NM_001143883)	TTS (NM_001143883)	1004	NM_001143883	653505		NM_001143883	ENSG00000263353	PPIAL4A	COAS-2|COAS2|PPIAL4|PPIAL4B	peptidylprolyl isomerase A like 4A	protein-coding
140818	chr2	236539751	236539850	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-30025	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
93242	chr17	17891101	17891680	+	0	NA	intron (NM_001033551, intron 3 of 13)	intron (NM_001033551, intron 3 of 13)	-54379	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
30734	chr10	84141451	84141550	+	0	NA	5' UTR (NM_014394, exon 2 of 9)	5' UTR (NM_014394, exon 2 of 9)	1991	NM_014394	27069		NM_014394	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
67425	chr14	70567871	70568030	+	0	NA	Intergenic	L1PA17|LINE|L1	32705	NM_005466	10001		NM_005466	ENSG00000133997	MED6	ARC33|NY-REN-28	mediator complex subunit 6	protein-coding
160493	chr3	30620001	30620950	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	13874	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
211562	chr7	105589271	105589700	+	0	NA	Intergenic	Intergenic	-7943	NM_001355527	100130771		NM_001355526	ENSG00000185055	EFCAB10	-	EF-hand calcium binding domain 10	protein-coding
33341	chr10	116796701	116797200	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	30618	NR_162126	113218494		NR_162126		MIR9851	-	microRNA 9851	ncRNA
111251	chr19	3526021	3526350	+	0	NA	intron (NM_001136198, intron 3 of 12)	intron (NM_001136198, intron 3 of 12)	3229	NM_001136198	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
121204	chr19	46604201	46604400	+	0	NA	intron (NM_001329923, intron 2 of 6)	intron (NM_001329923, intron 2 of 6)	2228	NM_001329922	808		NM_005184	ENSG00000160014	CALM3	CALM|CAM1|CAM2|CAMB|CPVT6|CaM|CaMIII|HEL-S-72|LQT16|PHKD|PHKD3	calmodulin 3	protein-coding
86616	chr16	67393151	67393830	+	0	NA	promoter-TSS (NM_015964)	promoter-TSS (NM_015964)	8	NM_015964	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
233165	chr9	137179401	137179600	+	0	NA	intron (NM_013366, intron 10 of 12)	intron (NM_013366, intron 10 of 12)	-7444	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
225522	chr9	35731621	35734180	+	0	NA	promoter-TSS (NM_006289)	promoter-TSS (NM_006289)	-22	NR_106912	102466201		NR_106912	ENSG00000273945	MIR6853	hsa-mir-6853	microRNA 6853	ncRNA
236041	chrX	55517051	55517350	+	0	NA	Intergenic	Intergenic	-28002	NM_201286	158880		NM_201286	ENSG00000247746	USP51	-	ubiquitin specific peptidase 51	protein-coding
154428	chr22	35345421	35345930	+	0	NA	intron (NR_156428, intron 11 of 13)	intron (NR_156428, intron 11 of 13)	-8876	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
57630	chr12	122507151	122507330	+	0	NA	intron (NR_036436, intron 8 of 9)	AluSx1|SINE|Alu	-6308	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
227766	chr9	93113371	93113750	+	0	NA	TTS (NM_001318010)	TTS (NM_001318010)	17343	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
224719	chr9	21527841	21528150	+	0	NA	intron (NR_152877, intron 1 of 3)	L1PA13|LINE|L1	-15810	NR_029505	407035		NR_029505	ENSG00000199177	MIR31	MIRN31|hsa-mir-31|miR-31	microRNA 31	ncRNA
15478	chr1	150366101	150366300	+	0	NA	intron (NM_015203, intron 1 of 10)	intron (NM_015203, intron 1 of 10)	2089	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
67373	chr14	69765001	69765500	+	0	NA	Intergenic	AluYa5|SINE|Alu	-1892	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
17157	chr1	156203651	156204150	+	0	NA	intron (NM_001377390, intron 3 of 3)	AluY|SINE|Alu	-9088	NM_001199663	100527963		NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF-1|PMF1	PMF1-BGLAP readthrough	protein-coding
46329	chr11	125489151	125489450	+	0	NA	3' UTR (NM_022549, exon 2 of 2)	3' UTR (NM_022549, exon 2 of 2)	-5914	NR_164146	403312		NM_203452	ENSG00000255537	LOC403312	-	putative uncharacterized protein MGC39545	ncRNA
188177	chr5	150484601	150484800	+	0	NA	intron (NR_105061, intron 2 of 2)	AluSg|SINE|Alu	1292	NR_105061	102546298		NR_105061	ENSG00000254333	NDST1-AS1	-	NDST1 antisense RNA 1	ncRNA
220442	chr8	100312421	100312680	+	0	NA	intron (NM_001280539, intron 2 of 10)	AluJb|SINE|Alu	-2597	NM_183419	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
158046	chr22	49939951	49940800	+	0	NA	Intergenic	AluSx|SINE|Alu	-20397	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
1163	chr1	2208751	2209130	+	0	NA	intron (NM_001282670, intron 2 of 7)	intron (NM_001282670, intron 2 of 7)	-1207	NM_001146310	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
60481	chr13	41222151	41222590	+	0	NA	intron (NM_004294, intron 9 of 9)	intron (NM_004294, intron 9 of 9)	-27801	NM_032138	84078		NM_032138	ENSG00000120696	KBTBD7	-	kelch repeat and BTB domain containing 7	protein-coding
80397	chr16	2572771	2573530	+	0	NA	intron (NM_002613, intron 6 of 13)	L1MB8|LINE|L1	-30234	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
163915	chr3	52571401	52571600	+	0	NA	intron (NM_181042, intron 24 of 29)	AluSx3|SINE|Alu	34895	NM_001124767	440957		NM_001124767	ENSG00000168273	UQCC5	C3orf78|SMIM4	ubiquinol-cytochrome c reductase complex assembly factor 5	protein-coding
48708	chr12	10668271	10669430	+	0	NA	intron (NM_018423, intron 1 of 10)	intron (NM_018423, intron 1 of 10)	5202	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
100935	chr17	64477951	64478280	+	0	NA	intron (NM_007215, intron 7 of 7)	intron (NM_007215, intron 7 of 7)	18939	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
7793	chr1	36244901	36245300	+	0	NA	intron (NM_001321471, intron 2 of 12)	intron (NM_001321471, intron 2 of 12)	20657	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
94167	chr17	28383471	28383630	+	0	NA	intron (NM_015077, intron 2 of 8)	intron (NM_015077, intron 2 of 8)	11856	NM_015077	23098		NM_015077	ENSG00000004139	SARM1	HsTIR|MyD88-5|SAMD2|SARM|hSARM1	sterile alpha and TIR motif containing 1	protein-coding
132278	chr2	104856051	104856480	+	0	NA	exon (NM_006236, exon 1 of 1)	exon (NM_006236, exon 1 of 1)	2150	NM_006236	5455		NM_006236	ENSG00000198914	POU3F3	BRN1|OTF8|SNIBFIS|brain-1|oct-8	POU class 3 homeobox 3	protein-coding
9964	chr1	54802771	54803130	+	0	NA	Intergenic	L1MB3|LINE|L1	-1627	NM_001114108	55001		NM_017904	ENSG00000006555	TTC22	-	tetratricopeptide repeat domain 22	protein-coding
180223	chr5	1526151	1526680	+	0	NA	Intergenic	Intergenic	-2455	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
128752	chr2	62193051	62193150	+	0	NA	Intergenic	L2b|LINE|L2	-3015	NM_006577	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
23246	chr1	227793321	227794130	+	0	NA	Intergenic	Intergenic	5205	NR_168384	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
147379	chr20	58591101	58591630	+	0	NA	intron (NR_034147, intron 6 of 6)	MIRc|SINE|MIR	-43407	NR_125359	79160		NM_024314	ENSG00000268941	LINC01711	-	long intergenic non-protein coding RNA 1711	ncRNA
102751	chr17	76268131	76268930	+	0	NA	intron (NM_182565, intron 2 of 2)	intron (NM_182565, intron 2 of 2)	3182	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
211475	chr7	105107321	105107580	+	0	NA	exon (NM_018682, exon 21 of 26)	exon (NM_018682, exon 21 of 26)	93245	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
172098	chr4	1053551	1054080	+	0	NA	Intergenic	Intergenic	41351	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
95427	chr17	36106571	36106730	+	0	NA	Intergenic	Intergenic	2823	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
214156	chr7	144513371	144513530	+	0	NA	intron (NR_146934, intron 6 of 6)	intron (NR_146934, intron 6 of 6)	-103223	NM_001080413	135935		NM_001080413	ENSG00000106410	NOBOX	OG-2|OG2|OG2X|POF5|TCAG_12042	NOBOX oogenesis homeobox	protein-coding
218678	chr8	58309601	58310200	+	0	NA	Intergenic	Intergenic	-37799	NR_105005	101929528		NR_105005	ENSG00000253281	LOC101929528	-	uncharacterized LOC101929528	ncRNA
45186	chr11	117325321	117325580	+	0	NA	intron (NM_001271933, intron 1 of 31)	AluSq2|SINE|Alu	-2404	NM_014956	22897		NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
89809	chr16	89548801	89550080	+	0	NA	intron (NM_003119, intron 12 of 16)	AluJr|SINE|Alu	-11217	NM_001243131	6137		NM_000977	ENSG00000167526	RPL13	BBC1|D16S444E|D16S44E|L13|SEMDIST|eL13	ribosomal protein L13	protein-coding
49077	chr12	14427851	14428180	+	0	NA	intron (NM_001286515, intron 2 of 12)	L2|LINE|L2	42734	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
113383	chr19	9079521	9080100	+	0	NA	Intergenic	Intergenic	-13435	NM_001004456	125963		NM_001004456	ENSG00000170929	OR1M1	OR19-5|OR19-6	olfactory receptor family 1 subfamily M member 1	protein-coding
114650	chr19	13030001	13030200	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	5321	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
180347	chr5	6719571	6719730	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	6218	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
184849	chr5	111703601	111703800	+	0	NA	intron (NR_040093, intron 2 of 6)	LTR82B|LTR|ERVL	52551	NM_001142483	9315		NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
168104	chr3	138577951	138578850	+	0	NA	intron (NM_001320598, intron 2 of 17)	HAL1M8|LINE|L1	13556	NM_001320600	80321		NM_024491	ENSG00000114107	CEP70	BITE	centrosomal protein 70	protein-coding
48342	chr12	9295821	9296280	+	0	NA	intron (NR_024374, intron 5 of 21)	L2c|LINE|L2	12393	NR_024374	642846		NR_024374		LOC642846	-	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like	ncRNA
224687	chr9	21326401	21327350	+	0	NA	Intergenic	Intergenic	8529	NM_018847	55958		NM_018847	ENSG00000198642	KLHL9	-	kelch like family member 9	protein-coding
221007	chr8	116022101	116022300	+	0	NA	intron (NR_046215, intron 7 of 13)	L2a|LINE|L2	302859	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
194286	chr6	32663421	32663680	+	0	NA	intron (NM_001243961, intron 2 of 5)	intron (NM_001243961, intron 2 of 5)	3107	NM_001243961	3119		NM_002123	ENSG00000179344	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
10586	chr1	67361501	67361900	+	0	NA	intron (NM_001374259, intron 10 of 16)	L1MCa|LINE|L1	53827	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
105968	chr18	5215021	5215280	+	0	NA	Intergenic	Intergenic	-17398	NM_001330553	642597		NM_001145194	ENSG00000231824	AKAIN1	C18orf42	A-kinase anchor inhibitor 1	protein-coding
217444	chr8	28618771	28619080	+	0	NA	Intergenic	AluSc8|SINE|Alu	82539	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
116374	chr19	17934401	17935100	+	0	NA	promoter-TSS (NM_138442)	promoter-TSS (NM_138442)	-346	NM_138442	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
149935	chr21	36309201	36309480	+	0	NA	Intergenic	AluY|SINE|Alu	-10849	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
114900	chr19	13921101	13921780	+	0	NA	intron (NM_017721, intron 14 of 28)	MLT1J|LTR|ERVL-MaLR	15239	NM_017721	54862		NM_017721	ENSG00000132024	CC2D1A	Aki-1|FREUD-1|Freud-1/Aki1|Lgd2|MRT3|TAPE	coiled-coil and C2 domain containing 1A	protein-coding
148225	chr20	63595371	63595880	+	0	NA	exon (NM_012384, exon 6 of 10)	exon (NM_012384, exon 6 of 10)	-21386	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
22309	chr1	213150951	213151350	+	0	NA	intron (NM_001287218, intron 7 of 14)	SVA_D|Retroposon|SVA	99909	NM_012424	26750		NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
168472	chr3	143152101	143152300	+	0	NA	Intergenic	Intergenic	32429	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
113089	chr19	8268471	8269950	+	0	NA	Intergenic	LTR13|LTR|ERVK	39148	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
87312	chr16	70186201	70186480	+	0	NA	intron (NM_173619, intron 12 of 12)	intron (NM_173619, intron 12 of 12)	-1982	NR_135173	105371328		NR_135173		LOC105371328	-	uncharacterized LOC105371328	ncRNA
63028	chr13	112895151	112896000	+	0	NA	Intergenic	Intergenic	73063	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
96260	chr17	39851101	39851700	+	0	NA	intron (NM_183231, intron 1 of 5)	L1ME3|LINE|L1	12788	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
164036	chr3	53271821	53272280	+	0	NA	Intergenic	AluJb|SINE|Alu	-15936	NM_001258028	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
147073	chr20	53752571	53752730	+	0	NA	Intergenic	Intergenic	123059	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
70432	chr14	102039201	102039730	+	0	NA	exon (NM_001376, exon 61 of 78)	exon (NM_001376, exon 61 of 78)	47579	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
126608	chr2	28789221	28789780	+	0	NA	intron (NM_206876, intron 7 of 8)	AluJr|SINE|Alu	-21334	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
172066	chr4	1027701	1028900	+	0	NA	Intergenic	Intergenic	15836	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
70254	chr14	101665571	101665730	+	0	NA	Intergenic	L1MEg|LINE|L1	-64787	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
105996	chr18	7877771	7877930	+	0	NA	intron (NM_002845, intron 2 of 30)	MIRb|SINE|MIR	-69025	NM_001378146	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
202032	chr6	152985371	152985730	+	0	NA	Intergenic	AluSz|SINE|Alu	-1971	NM_001142522	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
203661	chr7	992771	994030	+	0	NA	intron (NR_156697, intron 4 of 4)	intron (NR_156697, intron 4 of 4)	10219	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
228031	chr9	95889901	95890100	+	0	NA	intron (NM_001375291, intron 2 of 18)	intron (NM_001375291, intron 2 of 18)	-14023	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
96295	chr17	39947671	39948030	+	0	NA	Intergenic	LTR8|LTR|ERV1	6376	NM_001195545	100505591		NM_001195545	ENSG00000204913	LRRC3C	-	leucine rich repeat containing 3C	protein-coding
192803	chr6	26595451	26596120	+	0	NA	Intergenic	Intergenic	-1168	NM_013375	29777		NM_013375	ENSG00000146109	ABT1	Esf2|hABT1	activator of basal transcription 1	protein-coding
185470	chr5	131284401	131285030	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluJr4|SINE|Alu	20662	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
229695	chr9	124660251	124660630	+	0	NA	intron (NR_038975, intron 1 of 1)	intron (NR_038975, intron 1 of 1)	2004	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
13510	chr1	114748471	114749050	+	0	NA	intron (NM_001242891, intron 2 of 20)	intron (NM_001242891, intron 2 of 20)	9224	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
126958	chr2	35978151	35978480	+	0	NA	Intergenic	L1ME4b|LINE|L1	377255	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
218351	chr8	43033021	43033450	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-23064	NR_033698	2339		NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, subunit alpha	protein-coding
233504	chr9	138232821	138233080	+	0	NA	intron (NR_146178, intron 5 of 14)	intron (NR_146178, intron 5 of 14)	16094	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
228304	chr9	98116771	98116930	+	0	NA	intron (NM_014788, intron 1 of 5)	AluJb|SINE|Alu	2372	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
12685	chr1	109470651	109470750	+	0	NA	intron (NM_001040709, intron 2 of 5)	intron (NM_001040709, intron 2 of 5)	4154	NM_001040709	284612		NM_198280	ENSG00000143028	SYPL2	MG29	synaptophysin like 2	protein-coding
87588	chr16	73063121	73063580	+	0	NA	Intergenic	Intergenic	-4329	NM_001164766	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
6779	chr1	30758751	30759180	+	0	NA	Intergenic	Intergenic	-1191	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
209058	chr7	74765001	74765970	+	0	NA	Intergenic	Intergenic	-8477	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
19162	chr1	171739501	171740300	+	0	NA	intron (NM_001185127, intron 1 of 7)	intron (NM_001185127, intron 1 of 7)	2165	NM_003762	8674		NM_003762	ENSG00000117533	VAMP4	VAMP-4|VAMP24	vesicle associated membrane protein 4	protein-coding
213213	chr7	132985571	132985730	+	0	NA	intron (NM_017812, intron 3 of 7)	SVA_D|Retroposon|SVA	49265	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
198785	chr6	108895621	108896480	+	0	NA	intron (NM_001286609, intron 5 of 16)	intron (NM_001286609, intron 5 of 16)	28053	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
205146	chr7	7186771	7188430	+	0	NA	intron (NM_020156, intron 1 of 3)	MER20|DNA|hAT-Charlie	5056	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
203805	chr7	1289821	1290880	+	0	NA	Intergenic	CpG	57478	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
168565	chr3	148957651	148957750	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-33708	NM_001184721	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
106221	chr18	11849371	11850500	+	0	NA	intron (NM_182978, intron 5 of 11)	L2c|LINE|L2	-1478	NM_020412	57132		NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
28711	chr10	61761201	61761400	+	0	NA	intron (NM_173554, intron 6 of 6)	intron (NM_173554, intron 6 of 6)	98339	NM_173554	219621		NM_173554	ENSG00000183346	CABCOCO1	ARIEL|C10orf107	ciliary associated calcium binding coiled-coil 1	protein-coding
213982	chr7	142806871	142807030	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	35980	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
117429	chr19	19643001	19644450	+	0	NA	promoter-TSS (NM_001288999)	promoter-TSS (NM_001288999)	-68	NM_001288999	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
64606	chr14	30562451	30562750	+	0	NA	intron (NR_151720, intron 2 of 3)	LTR13|LTR|ERVK	3442	NM_017769	55632		NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
105640	chr18	907401	907950	+	0	NA	exon (NM_001099733, exon 3 of 5)	exon (NM_001099733, exon 3 of 5)	2309	NM_001117	116		NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
174117	chr4	36208851	36209450	+	0	NA	intron (NR_146894, intron 6 of 32)	intron (NR_146894, intron 6 of 32)	34789	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
4812	chr1	23600951	23601520	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26099	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
227798	chr9	93143671	93145180	+	0	NA	Intergenic	Intergenic	-10174	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
144726	chr20	36576321	36577030	+	0	NA	intron (NM_001199535, intron 1 of 4)	L1MB8|LINE|L1	2121	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
191715	chr6	13683301	13683500	+	0	NA	intron (NM_005493, intron 2 of 13)	intron (NM_005493, intron 2 of 13)	28435	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
137132	chr2	191028401	191028950	+	0	NA	TTS (NM_001243835)	TTS (NM_001243835)	7149	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
146424	chr20	49592521	49593150	+	0	NA	Intergenic	Intergenic	-24698	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
119627	chr19	40790521	40790780	+	0	NA	intron (NR_037791, intron 7 of 11)	AluY|SINE|Alu	-8541	NM_080732	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
53217	chr12	62281771	62282750	+	0	NA	intron (NM_001351164, intron 1 of 21)	AluJb|SINE|Alu	21856	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
18458	chr1	161548301	161548700	+	0	NA	exon (NM_001329120, exon 4 of 6)	exon (NM_001329120, exon 4 of 6)	1318	NM_000569	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
34825	chr11	295371	296280	+	0	NA	3' UTR (NM_025092, exon 14 of 14)	3' UTR (NM_025092, exon 14 of 14)	3701	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
102939	chr17	76659471	76660480	+	0	NA	Intergenic	Intergenic	-11953	NR_130916	105274304		NR_130916	ENSG00000261335	LOC105274304	-	uncharacterized LOC105274304	ncRNA
232937	chr9	136909021	136909480	+	0	NA	intron (NM_021138, intron 5 of 10)	intron (NM_021138, intron 5 of 10)	22517	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
168	chr1	610621	611250	+	0	NA	Intergenic	CpG	18074	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
150392	chr21	42297551	42297850	+	0	NA	TTS (NM_207174)	TTS (NM_207174)	17709	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
222598	chr8	141010371	141010530	+	0	NA	Intergenic	L1MB7|LINE|L1	-8371	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
110312	chr19	1845521	1846150	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	2648	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
58444	chr12	132063601	132064130	+	0	NA	intron (NM_015409, intron 47 of 52)	MER3|DNA|hAT-Charlie	-20418	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
45208	chr11	117825151	117825680	+	0	NA	promoter-TSS (NM_001680)	promoter-TSS (NM_001680)	-671	NM_001680	486		NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
183923	chr5	87398651	87398980	+	0	NA	intron (NM_001239, intron 7 of 8)	AluY|SINE|Alu	14089	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
79650	chr16	1192001	1192600	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	32968	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
184876	chr5	112549101	112549300	+	0	NA	Intergenic	LTR50|LTR|ERVL	-79236	NR_104672	102467214		NR_104672	ENSG00000250358	LINC02200	-	long intergenic non-protein coding RNA 2200	ncRNA
63156	chr13	113625171	113626180	+	0	NA	intron (NR_026580, intron 4 of 10)	CpG	32523	NM_000705	496		NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting subunit beta	protein-coding
106843	chr18	24031401	24031800	+	0	NA	intron (NM_001135993, intron 1 of 13)	L2a|LINE|L2	-16140	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
120185	chr19	42270211	42271630	+	0	NA	intron (NM_001379480, intron 1 of 20)	intron (NM_001379480, intron 1 of 20)	1668	NM_001379482	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
5995	chr1	26995371	26995630	+	0	NA	intron (NM_001013642, intron 1 of 1)	intron (NM_001013642, intron 1 of 1)	1808	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
84927	chr16	31260921	31261180	+	0	NA	intron (NM_000632, intron 1 of 29)	MER58D|DNA|hAT-Charlie	1075	NM_000632	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
147346	chr20	58251501	58251700	+	0	NA	intron (NR_003505, intron 5 of 16)	intron (NR_003505, intron 5 of 16)	-22947	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
234458	chrX	17697371	17697530	+	0	NA	intron (NM_001291868, intron 3 of 7)	L1MC4|LINE|L1	-39999	NM_001037535	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
91507	chr17	4945131	4946050	+	0	NA	TTS (NM_001320358)	TTS (NM_001320358)	2940	NM_001375991	5216		NM_005022	ENSG00000108518	PFN1	ALS18	profilin 1	protein-coding
78602	chr15	93152151	93152930	+	0	NA	Intergenic	Intergenic	-53526	NM_001365393								
66705	chr14	64238001	64238400	+	0	NA	intron (NM_001271877, intron 4 of 5)	intron (NM_001271877, intron 4 of 5)	22246	NM_182910	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
138470	chr2	206689171	206689330	+	0	NA	intron (NM_001093730, intron 9 of 11)	intron (NM_001093730, intron 9 of 11)	29146	NM_001093730	391475		NM_001093730	ENSG00000232125	DYTN	-	dystrotelin	protein-coding
18810	chr1	167641851	167642980	+	0	NA	non-coding (NR_136519, exon 3 of 3)	non-coding (NR_136519, exon 3 of 3)	12183	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
171507	chr3	196633721	196634330	+	0	NA	Intergenic	Intergenic	-1438	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
155981	chr22	39912401	39912850	+	0	NA	intron (NM_004810, intron 1 of 7)	MER20|DNA|hAT-Charlie	11541	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
3797	chr1	16716821	16717080	+	0	NA	intron (NR_026567, intron 1 of 10)	intron (NR_026567, intron 1 of 10)	3207	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
196498	chr6	43645021	43645710	+	0	NA	intron (NM_152732, intron 1 of 4)	CpG	329	NM_152732	221421		NM_152732	ENSG00000172426	RSPH9	C6orf206|CILD12|MRPS18AL1	radial spoke head component 9	protein-coding
65440	chr14	51563501	51563700	+	0	NA	intron (NR_047477, intron 2 of 3)	AluSz6|SINE|Alu	36352	NR_047477	100874185		NR_047477	ENSG00000258537	FRMD6-AS2	-	FRMD6 antisense RNA 2	ncRNA
127314	chr2	38777821	38779900	+	0	NA	intron (NM_024775, intron 1 of 2)	intron (NM_024775, intron 1 of 2)	650	NM_024775	79833		NM_024775	ENSG00000152147	GEMIN6	-	gem nuclear organelle associated protein 6	protein-coding
128880	chr2	64101171	64101930	+	0	NA	intron (NM_020651, intron 3 of 6)	intron (NM_020651, intron 3 of 6)	42870	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
2447	chr1	9629401	9632050	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-21006	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
167130	chr3	127685171	127685630	+	0	NA	Intergenic	Intergenic	12448	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
175022	chr4	52656301	52656500	+	0	NA	5' UTR (NM_001134223, exon 1 of 9)	5' UTR (NM_001134223, exon 1 of 9)	139	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
9720	chr1	53134221	53134480	+	0	NA	exon (NM_001287597, exon 2 of 10)	exon (NM_001287597, exon 2 of 10)	8288	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
158079	chr22	49970201	49973030	+	0	NA	Intergenic	CpG	8749	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
104755	chr17	81690151	81691230	+	0	NA	exon (NM_004712, exon 7 of 22)	exon (NM_004712, exon 7 of 22)	-3067	NR_106844	102465471		NR_106844	ENSG00000277784	MIR6786	hsa-mir-6786	microRNA 6786	ncRNA
160215	chr3	23922621	23922880	+	0	NA	3' UTR (NM_001253384, exon 5 of 5)	3' UTR (NM_001253384, exon 5 of 5)	5618	NM_001253383	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
44220	chr11	96331821	96332280	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-9388	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
80027	chr16	1944551	1944850	+	0	NA	3' UTR (NM_005061, exon 10 of 10)	3' UTR (NM_005061, exon 10 of 10)	-1501	NM_001382264	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
218857	chr8	60402771	60403170	+	0	NA	non-coding (NR_103854, exon 3 of 3)	non-coding (NR_103854, exon 3 of 3)	10848	NR_103854	100505532		NR_103854		LINC01301	-	long intergenic non-protein coding RNA 1301	ncRNA
70615	chr14	102800921	102801380	+	0	NA	intron (NM_001199427, intron 1 of 7)	AluYd8|SINE|Alu	23671	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
50467	chr12	47758671	47759600	+	0	NA	promoter-TSS (NM_001098531)	promoter-TSS (NM_001098531)	-255	NM_001098531	10411		NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
46099	chr11	122857901	122858300	+	0	NA	intron (NM_019604, intron 5 of 9)	AluJb|SINE|Alu	-4231	NM_001304782	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
201356	chr6	144658901	144659600	+	0	NA	intron (NM_001375323, intron 1 of 24)	intron (NM_001375323, intron 1 of 24)	76102	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
22107	chr1	211675221	211676530	+	0	NA	promoter-TSS (NM_002497)	promoter-TSS (NM_002497)	113	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
121810	chr19	47926001	47926200	+	0	NA	Intergenic	L1MC4|LINE|L1	2321	NR_024227	100169957		NR_024227		SNAR-A6	-	small NF90 (ILF3) associated RNA A6	snRNA
70774	chr14	103505251	103505750	+	0	NA	Intergenic	L2a|LINE|L2	17330	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
145980	chr20	46356621	46358050	+	0	NA	intron (NM_173179, intron 3 of 9)	intron (NM_173179, intron 3 of 9)	7090	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
103235	chr17	77499001	77500330	+	0	NA	3' UTR (NM_001113492, exon 12 of 12)	3' UTR (NM_001113492, exon 12 of 12)	24030	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
158373	chr22	50476901	50477380	+	0	NA	Intergenic	Intergenic	-2105	NM_001365819	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
149502	chr21	32610171	32610330	+	0	NA	intron (NM_021254, intron 1 of 6)	AluSz6|SINE|Alu	2127	NR_146639	110091775		NM_001350338	ENSG00000265590	CFAP298-TCP10L	C21orf59-TCP10L|C21orf77|LINC00846	CFAP298-TCP10L readthrough	protein-coding
196466	chr6	43521371	43521880	+	0	NA	TTS (NM_020750)	TTS (NM_020750)	4536	NM_203290	9533		NM_004875	ENSG00000171453	POLR1C	AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3	RNA polymerase I and III subunit C	protein-coding
75085	chr15	64389471	64389930	+	0	NA	intron (NM_001321924, intron 1 of 12)	Charlie15b|DNA|hAT-Charlie	1864	NM_016213	9325		NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5	thyroid hormone receptor interactor 4	protein-coding
210913	chr7	101213001	101213400	+	0	NA	exon (NM_001084, exon 7 of 19)	exon (NM_001084, exon 7 of 19)	4381	NM_001084	8985		NM_001084	ENSG00000106397	PLOD3	LH3	procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	protein-coding
180841	chr5	32571071	32571430	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-14307	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
227330	chr9	89449321	89449630	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	30415	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
112848	chr19	7541971	7542130	+	0	NA	exon (NM_001166113, exon 13 of 35)	exon (NM_001166113, exon 13 of 35)	6333	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
217050	chr8	23297301	23297780	+	0	NA	3' UTR (NM_002318, exon 14 of 14)	3' UTR (NM_002318, exon 14 of 14)	9432	NM_001136108	203069		NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
107551	chr18	48784971	48785600	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	114685	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
11294	chr1	89268371	89268730	+	0	NA	intron (NM_001134486, intron 3 of 10)	intron (NM_001134486, intron 3 of 10)	4310	NM_001134486	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
34599	chr10	133264451	133265680	+	0	NA	intron (NM_001109, intron 21 of 22)	intron (NM_001109, intron 21 of 22)	11803	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
210282	chr7	99421151	99421450	+	0	NA	intron (NM_015545, intron 7 of 7)	AluJb|SINE|Alu	12128	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
26482	chr10	17680551	17681050	+	0	NA	intron (NM_001324284, intron 3 of 14)	L1MB3|LINE|L1	36649	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
207262	chr7	43906091	43906940	+	0	NA	promoter-TSS (NM_001077663)	promoter-TSS (NM_001077663)	81	NM_001204871	100534592		NM_001204871	ENSG00000270617	URGCP-MRPS24	-	URGCP-MRPS24 readthrough	protein-coding
35316	chr11	1032671	1032830	+	0	NA	intron (NM_005961, intron 2 of 32)	(GT)n|Simple_repeat|Simple_repeat	3968	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
69185	chr14	92656371	92657000	+	0	NA	intron (NM_024832, intron 6 of 9)	L2b|LINE|L2	80451	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
177236	chr4	108619711	108621180	+	0	NA	promoter-TSS (NR_026968)	promoter-TSS (NR_026968)	12	NR_026968	285456		NM_182591	ENSG00000234492	RPL34-DT	RPL34-AS1	RPL34 divergent transcript	ncRNA
162219	chr3	47039571	47040080	+	0	NA	intron (NR_146158, intron 18 of 21)	AluSq|SINE|Alu	28283	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
190152	chr5	178118001	178118630	+	0	NA	intron (NM_015111, intron 1 of 4)	MIRb|SINE|MIR	4783	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
221834	chr8	128118951	128119050	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-31116	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
213495	chr7	139055051	139055350	+	0	NA	intron (NM_020119, intron 10 of 12)	intron (NM_020119, intron 10 of 12)	-11043	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
82441	chr16	16331451	16331750	+	0	NA	non-coding (NR_036447, exon 23 of 31)	non-coding (NR_036447, exon 23 of 31)	2295	NR_107060	102465908		NR_107060	ENSG00000277698	MIR6770-2	hsa-mir-6770-2	microRNA 6770-2	ncRNA
135177	chr2	157896971	157898100	+	0	NA	Intergenic	AluJb|SINE|Alu	-21205	NM_001111067	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
205179	chr7	7587801	7588030	+	0	NA	intron (NR_163250, intron 6 of 11)	intron (NR_163250, intron 6 of 11)	19889	NM_001370078	54468		NM_019005	ENSG00000164654	MIOS	MIO|Sea4|Yulink	meiosis regulator for oocyte development	protein-coding
175944	chr4	80507421	80507880	+	0	NA	intron (NM_001206997, intron 2 of 6)	L2|LINE|L2	171920	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
137964	chr2	201182421	201183950	+	0	NA	promoter-TSS (NM_032974)	promoter-TSS (NM_032974)	44	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
127087	chr2	37588501	37588780	+	0	NA	Intergenic	L2b|LINE|L2	83002	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
164584	chr3	65854921	65855180	+	0	NA	intron (NM_001033057, intron 1 of 22)	Charlie8|DNA|hAT-Charlie	-38766	NR_046575	100873983		NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
216326	chr8	13042371	13042530	+	0	NA	Intergenic	Intergenic	30186	NM_001099677	57604		NM_020844	ENSG00000250305	TRMT9B	C8orf79|KIAA1456|TRM9L|hTRM9L	tRNA methyltransferase 9B (putative)	protein-coding
194764	chr6	34069271	34069630	+	0	NA	intron (NM_001282847, intron 2 of 9)	intron (NM_001282847, intron 2 of 9)	36517	NM_001256813	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
51782	chr12	53348901	53349180	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4247	NM_001300837	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
71112	chr14	104924821	104925280	+	0	NA	intron (NM_138790, intron 1 of 10)	intron (NM_138790, intron 1 of 10)	171	NM_001308174	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
27072	chr10	27225701	27227200	+	0	NA	intron (NM_001301253, intron 3 of 11)	(AC)n|Simple_repeat|Simple_repeat	14036	NM_001301252	91452		NM_145698	ENSG00000107897	ACBD5	RDLKD	acyl-CoA binding domain containing 5	protein-coding
42817	chr11	72824951	72825450	+	0	NA	intron (NM_033388, intron 9 of 17)	intron (NM_033388, intron 9 of 17)	10789	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
32889	chr10	110154171	110154330	+	0	NA	Intergenic	L1MB7|LINE|L1	-2270	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
72516	chr15	34098071	34098450	+	0	NA	intron (NM_020154, intron 1 of 4)	LTR33|LTR|ERVL	3602	NM_020154	56851		NM_020154	ENSG00000134153	EMC7	C11orf3|C15orf24|HT022|ORF1-FL1	ER membrane protein complex subunit 7	protein-coding
42034	chr11	67435261	67435600	+	0	NA	TTS (NM_020441)	TTS (NM_020441)	2252	NM_005608	5790		NM_005608	ENSG00000213402	PTPRCAP	CD45-AP|LPAP	protein tyrosine phosphatase receptor type C associated protein	protein-coding
108256	chr18	63232601	63233080	+	0	NA	intron (NM_000633, intron 2 of 2)	L1ME3Cz|LINE|L1	86929	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
100502	chr17	62039371	62039730	+	0	NA	intron (NM_005121, intron 3 of 29)	AluSx1|SINE|Alu	25728	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
63398	chr13	114071651	114071750	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	6255	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171886	chr4	784451	785030	+	0	NA	TTS (NM_006651)	TTS (NM_006651)	-2892	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
94369	chr17	28919751	28920050	+	0	NA	intron (NM_020889, intron 5 of 8)	intron (NM_020889, intron 5 of 8)	-6375	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
227284	chr9	89387051	89387550	+	0	NA	intron (NM_001371200, intron 14 of 20)	intron (NM_001371200, intron 14 of 20)	68449	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
222566	chr8	140619171	140619980	+	0	NA	intron (NM_012154, intron 1 of 18)	L1MC4a|LINE|L1	16058	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
96486	chr17	40285171	40285330	+	0	NA	Intergenic	L2c|LINE|L2	-2629	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
80199	chr16	2146501	2147380	+	0	NA	Intergenic	Intergenic	-1204	NM_001308053	25837		NM_014353	ENSG00000167964	RAB26	V46133	RAB26, member RAS oncogene family	protein-coding
46127	chr11	123032251	123032550	+	0	NA	Intergenic	AluY|SINE|Alu	14834	NR_027288	341056		NR_027288		SAE1P1	-	SAE1 pseudogene 1	pseudo
17359	chr1	156506551	156506650	+	0	NA	Intergenic	Intergenic	-5825	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
62662	chr13	102556001	102556280	+	0	NA	Intergenic	Intergenic	-40846	NM_003291	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
97283	chr17	43122801	43123000	+	0	NA	intron (NM_007300, intron 2 of 23)	AluY|SINE|Alu	1215	NM_007298	672		NM_007294	ENSG00000012048	BRCA1	BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53	BRCA1 DNA repair associated	protein-coding
115745	chr19	16297851	16297950	+	0	NA	Intergenic	MLT1E|LTR|ERVL-MaLR	-26926	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
25211	chr10	5718401	5718800	+	0	NA	intron (NM_017782, intron 3 of 20)	AluSq|SINE|Alu	33762	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
21219	chr1	204123321	204123600	+	0	NA	intron (NM_005686, intron 11 of 13)	intron (NM_005686, intron 11 of 13)	-17948	NR_123739	101929441		NR_123739	ENSG00000230550	ERLNC1	ElncRNA1|TC0101441	estrogen receptor responsive lncRNA 1	ncRNA
84715	chr16	30884821	30885080	+	0	NA	intron (NR_110942, intron 2 of 2)	intron (NR_110942, intron 2 of 2)	-8953	NR_031576	100313837		NR_031576	ENSG00000211591	MIR762	hsa-mir-762	microRNA 762	ncRNA
178816	chr4	153527471	153528030	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	61390	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
122189	chr19	48934901	48935630	+	0	NA	intron (NM_014475, intron 2 of 6)	intron (NM_014475, intron 2 of 6)	1566	NM_014475	27294		NM_014475	ENSG00000104808	DHDH	2DD|HUM2DD	dihydrodiol dehydrogenase	protein-coding
92080	chr17	7527251	7527950	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-21458	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
30472	chr10	79196571	79197180	+	0	NA	intron (NM_020338, intron 4 of 24)	intron (NM_020338, intron 4 of 24)	127909	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
194663	chr6	33632251	33632960	+	0	NA	non-coding (NR_134628, exon 2 of 2)	non-coding (NR_134628, exon 2 of 2)	1140	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
97076	chr17	42386101	42386500	+	0	NA	intron (NM_001369516, intron 1 of 23)	AluSx4|SINE|Alu	2142	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
14629	chr1	145462371	145462730	+	0	NA	Intergenic	Intergenic	-56772	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
178531	chr4	151009071	151009950	+	0	NA	intron (NM_001367550, intron 2 of 56)	AluSz|SINE|Alu	5757	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
197101	chr6	57089601	57091600	+	0	NA	intron (NM_015555, intron 1 of 13)	CpG	412	NM_001257273	26036		NM_015555	ENSG00000112200	ZNF451	COASTER|ZATT|dJ417I1.1	zinc finger protein 451	protein-coding
220711	chr8	101891521	101892190	+	0	NA	intron (NM_001040626, intron 3 of 6)	L1PA2|LINE|L1	-92577	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
84674	chr16	30760201	30760700	+	0	NA	exon (NM_001195620, exon 4 of 4)	exon (NM_001195620, exon 4 of 4)	-1162	NM_001207034	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
150143	chr21	38356071	38356250	+	0	NA	Intergenic	Intergenic	-10084	NR_110545	102724678		NR_110545		LINC01423	-	long intergenic non-protein coding RNA 1423	ncRNA
55999	chr12	110299671	110300430	+	0	NA	intron (NM_170665, intron 5 of 19)	AluSp|SINE|Alu	18803	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
51991	chr12	53960751	53961650	+	0	NA	Intergenic	CpG	6297	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
123427	chr19	54109751	54110130	+	0	NA	intron (NM_001321792, intron 3 of 5).5	intron (NM_001321792, intron 3 of 5).5	5134	NM_001321792	29844		NM_013342	ENSG00000105619	TFPT	FB1|INO80F|amida	TCF3 fusion partner	protein-coding
42947	chr11	73597571	73599130	+	0	NA	promoter-TSS (NM_001286051)	promoter-TSS (NM_001286051)	-238	NM_015159	23201		NM_015159	ENSG00000054965	FAM168A	KIAA0280|TCRP1	family with sequence similarity 168 member A	protein-coding
203536	chr7	868371	868730	+	0	NA	intron (NR_160282, intron 20 of 22)	intron (NR_160282, intron 20 of 22)	-8004	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
26585	chr10	22010921	22011630	+	0	NA	Intergenic	Intergenic	-7545	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
116823	chr19	18564701	18564900	+	0	NA	intron (NM_001171948, intron 3 of 5)	intron (NM_001171948, intron 3 of 5)	6930	NM_024069	79036		NM_024069	ENSG00000105700	KXD1	BORCS4|C10orf50|C19orf50|KXDL|MST096|MSTP096	KxDL motif containing 1	protein-coding
90370	chr17	1253601	1254230	+	0	NA	Intergenic	Intergenic	-16529	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
212162	chr7	116864701	116865430	+	0	NA	intron (NM_006136, intron 1 of 9)	MIRb|SINE|MIR	2478	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
25410	chr10	6546051	6546480	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	34011	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
117967	chr19	33300801	33301200	+	0	NA	3' UTR (NM_004364, exon 1 of 1)	3' UTR (NM_004364, exon 1 of 1)	1534	NM_004364	1050		NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	CCAAT enhancer binding protein alpha	protein-coding
100987	chr17	64612601	64613000	+	0	NA	intron (NM_022739, intron 1 of 18)	intron (NM_022739, intron 1 of 18)	49507	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
115174	chr19	14428651	14429200	+	0	NA	Intergenic	AluJb|SINE|Alu	-4381	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
230989	chr9	129493501	129493800	+	0	NA	intron (NR_038955, intron 2 of 4)	intron (NR_038955, intron 2 of 4)	4990	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
203811	chr7	1357921	1358480	+	0	NA	Intergenic	Intergenic	101270	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
21357	chr1	204828321	204829150	+	0	NA	promoter-TSS (NM_001005389)	promoter-TSS (NM_001005389)	83	NR_165492	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
146262	chr20	48937871	48938230	+	0	NA	intron (NM_006420, intron 1 of 38)	intron (NM_006420, intron 1 of 38)	16339	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
136871	chr2	187990051	187990350	+	0	NA	Intergenic	Intergenic	297491	NR_126396	104355152		NR_126396	ENSG00000231689	LINC01090	-	long intergenic non-protein coding RNA 1090	ncRNA
191701	chr6	13663171	13663530	+	0	NA	intron (NM_005493, intron 2 of 13)	L1ME2z|LINE|L1	48015	NM_016167	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
98339	chr17	46282351	46282650	+	0	NA	intron (NM_001103154, intron 4 of 4)	AluJr|SINE|Alu	-12631	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
163378	chr3	50489601	50489800	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	13934	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
227509	chr9	91341171	91341550	+	0	NA	intron (NM_001351432, intron 4 of 10)	intron (NM_001351432, intron 4 of 10)	20558	NM_001698	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
17217	chr1	156272321	156272780	+	0	NA	intron (NM_001323616, intron 7 of 22)	intron (NM_001323616, intron 7 of 22)	10275	NM_015327	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
176718	chr4	101283521	101283780	+	0	NA	intron (NM_001130692, intron 1 of 11)	MLT1O|LTR|ERVL-MaLR	-42778	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
84175	chr16	29814601	29814880	+	0	NA	3' UTR (NM_001256443, exon 2 of 2)	3' UTR (NM_001256443, exon 2 of 2)	-1412	NM_024516	79447		NM_024516	ENSG00000280789	PAGR1	C16orf53|GAS|PA1	PAXIP1 associated glutamate rich protein 1	protein-coding
173562	chr4	10095501	10097700	+	0	NA	intron (NM_005112, intron 2 of 11)	intron (NM_005112, intron 2 of 11)	-17908	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
184972	chr5	113507521	113508180	+	0	NA	Intergenic	MIR3|SINE|MIR	-5844	NM_022828	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
85363	chr16	50266221	50266760	+	0	NA	promoter-TSS (NM_001286057)	promoter-TSS (NM_001286057)	-61	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
1151	chr1	2194021	2195850	+	0	NA	promoter-TSS (NM_001282673)	promoter-TSS (NM_001282673)	-160	NR_046427	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
224635	chr9	20604471	20604980	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	17213	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
130082	chr2	74497451	74498290	+	0	NA	3' UTR (NM_001282430, exon 2 of 2)	3' UTR (NM_001282430, exon 2 of 2)	1733	NM_001282430	85474		NM_001009812	ENSG00000179528	LBX2	LP3727	ladybird homeobox 2	protein-coding
43239	chr11	75505271	75505430	+	0	NA	intron (NM_030792, intron 1 of 16)	(GCCCCCA)n|Simple_repeat|Simple_repeat	20223	NM_001351168	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
82240	chr16	15052721	15053330	+	0	NA	intron (NM_173474, intron 1 of 9).2	MER3|DNA|hAT-Charlie	3049	NM_173474	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
38798	chr11	47268451	47270540	+	0	NA	promoter-TSS (NM_001376597)	promoter-TSS (NM_001376597)	120	NM_001376595	8567		NM_003682	ENSG00000110514	MADD	DEEAH|DENN|IG20|NEDDISH|RAB3GEP|RabGEF	MAP kinase activating death domain	protein-coding
137250	chr2	191882051	191882150	+	0	NA	Intergenic	CpG	-35012	NM_004657	8436		NM_004657	ENSG00000168497	CAVIN2	PS-p68|SDPR|SDR|cavin-2	caveolae associated protein 2	protein-coding
164209	chr3	56887001	56888050	+	0	NA	intron (NM_001377407, intron 3 of 12)	MIRb|SINE|MIR	28911	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
193930	chr6	31647701	31648100	+	0	NA	intron (NM_080702, intron 6 of 24).6	intron (NM_080702, intron 6 of 24).6	4490	NM_001098534	7917		NM_004639	ENSG00000204463	BAG6	BAG-6|BAT3|D6S52E|G3	BAG cochaperone 6	protein-coding
149987	chr21	36854551	36854650	+	0	NA	intron (NR_148020, intron 6 of 10)	intron (NR_148020, intron 6 of 10)	107758	NM_001352518	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
150675	chr21	43467351	43468130	+	0	NA	intron (NR_136540, intron 4 of 4).2	(CCACACA)n|Simple_repeat|Simple_repeat	10483	NR_026863	114038		NM_153752	ENSG00000185186	LINC00313	C21orf84|CH507-42P11.5|NCRNA00313	long intergenic non-protein coding RNA 313	ncRNA
55075	chr12	96578501	96578780	+	0	NA	intron (NM_001367885, intron 20 of 68)	intron (NM_001367885, intron 20 of 68)	89063	NM_001367885	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
169096	chr3	154323501	154325050	+	0	NA	exon (NM_001114397, exon 1 of 25)	exon (NM_001114397, exon 1 of 25)	212	NM_020865	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
71772	chr15	21262251	21262550	+	0	NA	Intergenic	REP522|Satellite|telo	35429	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
69684	chr14	98155721	98155980	+	0	NA	Intergenic	MIRb|SINE|MIR	-177726	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
173475	chr4	9000521	9001080	+	0	NA	Intergenic	CpG	-128961	NM_001306142	3166		NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
43988	chr11	94164501	94164700	+	0	NA	intron (NM_015368, intron 2 of 4)	L1M1|LINE|L1	35759	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
86536	chr16	67173401	67174880	+	0	NA	intron (NM_001276312, intron 3 of 5)	intron (NM_001276312, intron 3 of 5)	287	NM_001276311	8996		NM_003946	ENSG00000140939	NOL3	ARC|FCM|MYOCL1|MYP|NOP|NOP30	nucleolar protein 3	protein-coding
126481	chr2	28388721	28389300	+	0	NA	intron (NR_103831, intron 1 of 1)	AluSz|SINE|Alu	-3848	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
30575	chr10	80029351	80029450	+	0	NA	Intergenic	MER101B|LTR|ERV1	-49246	NM_001270372	80195		NM_025125	ENSG00000133678	TMEM254	C10orf57|bA369J21.6	transmembrane protein 254	protein-coding
120269	chr19	42663451	42663550	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-68576	NM_001816	1088		NM_001816	ENSG00000124469	CEACAM8	CD66b|CD67|CGM6|NCA-95	CEA cell adhesion molecule 8	protein-coding
57510	chr12	122107871	122108850	+	0	NA	intron (NM_014938, intron 1 of 16)	AluSc|SINE|Alu	29604	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
20729	chr1	200889501	200889980	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-1791	NM_018265	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
87043	chr16	68286151	68286750	+	0	NA	intron (NM_001076785, intron 4 of 11)	intron (NM_001076785, intron 4 of 11)	21924	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
161730	chr3	44198651	44199130	+	0	NA	Intergenic	Intergenic	-42996	NM_001145030	375337		NM_001145030	ENSG00000173769	TOPAZ1	C3orf77	testis and ovary specific TOPAZ 1	protein-coding
144995	chr20	37519771	37519930	+	0	NA	intron (NM_006698, intron 1 of 1)	intron (NM_006698, intron 1 of 1)	453	NM_001317075	10904		NM_006698	ENSG00000166619	BLCAP	BC10	BLCAP apoptosis inducing factor	protein-coding
18940	chr1	168509601	168511250	+	0	NA	Intergenic	Intergenic	-14781	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
230548	chr9	128411101	128411780	+	0	NA	intron (NR_031672, intron 2 of 2).4	intron (NR_031672, intron 2 of 2).4	-7720	NM_001286760	51148		NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
139170	chr2	219200521	219201800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-5622	NM_138802	130617		NM_138802	ENSG00000158552	ZFAND2B	AIRAPL	zinc finger AN1-type containing 2B	protein-coding
102828	chr17	76463951	76464350	+	0	NA	intron (NM_001166579, intron 3 of 6)	AluSx|SINE|Alu	-3453	NM_001088	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
44421	chr11	104163421	104164410	+	0	NA	exon (NM_033135, exon 1 of 7)	exon (NM_033135, exon 1 of 7)	232	NM_033135	80310		NM_025208	ENSG00000170962	PDGFD	IEGF|MSTP036|SCDGF-B|SCDGFB	platelet derived growth factor D	protein-coding
1485	chr1	2749971	2750130	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	50818	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
10292	chr1	64847771	64848050	+	0	NA	intron (NM_001321857, intron 12 of 24)	intron (NM_001321857, intron 12 of 24)	102835	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
152679	chr22	21610951	21611450	+	0	NA	intron (NM_003347, intron 3 of 3)	intron (NM_003347, intron 3 of 3)	18822	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
60466	chr13	41086051	41086550	+	0	NA	Intergenic	MER74B|LTR|ERVL	14800	NR_036127	100422878		NR_036127	ENSG00000264226	MIR3168	-	microRNA 3168	ncRNA
9786	chr1	53562001	53562630	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	102916	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
79926	chr16	1735901	1736600	+	0	NA	intron (NM_015133, intron 4 of 31)	intron (NM_015133, intron 4 of 31)	1265	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
48013	chr12	6932771	6933480	+	0	NA	intron (NM_001940, intron 1 of 9)	MIR|SINE|MIR	5166	NM_001940	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
187990	chr5	149522001	149522650	+	0	NA	intron (NM_001892, intron 3 of 9)	AluJb|SINE|Alu	28040	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
32676	chr10	103912501	103913130	+	0	NA	intron (NM_024928, intron 2 of 9)	intron (NM_024928, intron 2 of 9)	5369	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
23578	chr1	229529151	229529250	+	0	NA	intron (NM_012089, intron 8 of 12)	AluY|SINE|Alu	20770	NR_110630	101927478		NR_110630		NUP133-DT	-	NUP133 divergent transcript	ncRNA
235428	chrX	45803571	45803750	+	0	NA	Intergenic	Intergenic	47830	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
169068	chr3	153379351	153379450	+	0	NA	Intergenic	AluYm1|SINE|Alu	-105095	NR_160966	152118		NR_160966	ENSG00000237787	LINC02877	C3orf79	long intergenic non-protein coding RNA 2877	ncRNA
50784	chr12	49042721	49042980	+	0	NA	exon (NM_003482, exon 27 of 55)	exon (NM_003482, exon 27 of 55)	17944	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
70114	chr14	100243401	100244200	+	0	NA	intron (NM_003403, intron 1 of 4)	AluJb|SINE|Alu	4656	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
11743	chr1	91997671	91997980	+	0	NA	intron (NM_001726, intron 15 of 18)	intron (NM_001726, intron 15 of 18)	-32160	NM_173567	253152		NM_173567	ENSG00000172031	EPHX4	ABHD7|EH4|EPHXRP	epoxide hydrolase 4	protein-coding
166522	chr3	114388901	114389550	+	0	NA	TTS (NR_038993)	TTS (NR_038993)	-5583	NM_001164342	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
122265	chr19	49055271	49055430	+	0	NA	intron (NM_033142, intron 3 of 4)	intron (NM_033142, intron 3 of 4)	2399	NM_033142	94027		NM_033142	ENSG00000196337	CGB7	CG-beta-a|CGB6	chorionic gonadotropin subunit beta 7	protein-coding
58055	chr12	124493851	124495130	+	0	NA	intron (NM_001077261, intron 3 of 47)	intron (NM_001077261, intron 3 of 47)	73122	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
107476	chr18	47147721	47148250	+	0	NA	intron (NM_032124, intron 1 of 6)	AluJb|SINE|Alu	2515	NM_001318765	84064		NM_032124	ENSG00000167220	HDHD2	3110052N05Rik|HEL-S-301	haloacid dehalogenase like hydrolase domain containing 2	protein-coding
206346	chr7	30345871	30346030	+	0	NA	intron (NM_147128, intron 2 of 4)	L1MEj|LINE|L1	-24100	NR_002186	222161		NM_152747		DKFZP586I1420	-	uncharacterized protein DKFZp586I1420	pseudo
37680	chr11	27497301	27497500	+	0	NA	3' UTR (NM_018362, exon 5 of 5)	3' UTR (NM_018362, exon 5 of 5)	9369	NM_018362	55327		NM_018362	ENSG00000148943	LIN7C	LIN-7-C|LIN-7C|MALS-3|MALS3|VELI3	lin-7 homolog C, crumbs cell polarity complex component	protein-coding
65241	chr14	49886521	49886980	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6332	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
61249	chr13	49998771	49998930	+	0	NA	intron (NM_005798, intron 2 of 2)	AluSz|SINE|Alu	1808	NM_005798	10206		NM_005798	ENSG00000204977	TRIM13	CAR|DLEU5|LEU5|RFP2|RNF77	tripartite motif containing 13	protein-coding
191639	chr6	13303761	13304150	+	0	NA	TTS (NM_001143966)	TTS (NM_001143966)	-8369	NR_160971	100130357		NM_001242698	ENSG00000215022	LOC100130357	-	uncharacterized LOC100130357	ncRNA
208555	chr7	70845551	70845750	+	0	NA	Intergenic	(GGGGAGGGAG)n|Simple_repeat|Simple_repeat	-286494	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
174052	chr4	26886801	26887900	+	0	NA	intron (NM_020860, intron 1 of 11)	L3|LINE|CR1	26509	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
178912	chr4	158729851	158730300	+	0	NA	Intergenic	Intergenic	-6679	NM_005038	5481		NM_005038	ENSG00000171497	PPID	CYP-40|CYPD	peptidylprolyl isomerase D	protein-coding
45868	chr11	119692421	119692680	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	36650	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
141020	chr2	238167051	238167480	+	0	NA	3' UTR (NM_001291832, exon 8 of 8)	3' UTR (NM_001291832, exon 8 of 8)	8295	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
99733	chr17	50916771	50917350	+	0	NA	Intergenic	Intergenic	-49082	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
46975	chr11	135075601	135076280	+	0	NA	Intergenic	TAR1|Satellite|telo	90588	NR_135050	100507548		NR_135050		LOC100507548	-	uncharacterized LOC100507548	ncRNA
163651	chr3	52181901	52182630	+	0	NA	Intergenic	Intergenic	-15818	NM_199166	211		NM_000688	ENSG00000023330	ALAS1	ALAS|ALAS-H|ALAS3|ALASH|MIG4	5'-aminolevulinate synthase 1	protein-coding
232985	chr9	136982701	136983400	+	0	NA	promoter-TSS (NM_207510)	promoter-TSS (NM_207510)	57	NM_207510	401562		NM_207510	ENSG00000214402	LCNL1	-	lipocalin like 1	protein-coding
178283	chr4	145019201	145019830	+	0	NA	intron (NM_001256711, intron 5 of 6)	L1PB1|LINE|L1	77867	NM_001318367	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
13630	chr1	116420601	116421130	+	0	NA	Intergenic	Intergenic	-2243	NR_027646	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
238854	chrX	154484251	154484430	+	0	NA	3' UTR (NM_014235, exon 4 of 4)	3' UTR (NM_014235, exon 4 of 4)	2275	NM_014235	8266		NM_014235	ENSG00000102178	UBL4A	DX254E|DXS254E|G6PD|GDX|GET5|MDY2|TMA24|UBL4	ubiquitin like 4A	protein-coding
9613	chr1	52367701	52367900	+	0	NA	Intergenic	Intergenic	-1595	NM_032449	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
101853	chr17	74201571	74202280	+	0	NA	Intergenic	Intergenic	-1753	NM_000999	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
175208	chr4	56656131	56657080	+	0	NA	promoter-TSS (NM_001145459)	promoter-TSS (NM_001145459)	-83	NM_001145459	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
10561	chr1	67192871	67193230	+	0	NA	intron (NM_144701, intron 4 of 10)	L2a|LINE|L2	26596	NM_144701	149233		NM_144701	ENSG00000162594	IL23R	PSORS7	interleukin 23 receptor	protein-coding
187646	chr5	143029001	143029600	+	0	NA	intron (NR_146198, intron 12 of 22)	intron (NR_146198, intron 12 of 22)	-160390	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
148574	chr21	5021771	5023130	+	0	NA	promoter-TSS (NM_001363770)	promoter-TSS (NM_001363770)	-81	NM_001363770	102723996		NM_001363770	ENSG00000277117	LOC102723996	-	ICOS ligand	protein-coding
53157	chr12	57934871	57935030	+	0	NA	intron (NR_038269, intron 2 of 2)	intron (NR_038269, intron 2 of 2)	1214	NR_038269	100506844		NR_038269	ENSG00000257698	GIHCG	-	GIHCG inhibitor of miR-200b/200a/429 expression	ncRNA
41169	chr11	65618201	65618400	+	0	NA	exon (NM_032223, exon 6 of 35)	exon (NM_032223, exon 6 of 35)	1988	NM_032223	399909		NM_032223	ENSG00000197136	PCNX3	PCNXL3	pecanex 3	protein-coding
45161	chr11	117206651	117207280	+	0	NA	3' UTR (NM_001001522, exon 5 of 5)	3' UTR (NM_001001522, exon 5 of 5)	-5051	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
15036	chr1	148364621	148364880	+	0	NA	Intergenic	LTR56|LTR|ERV1	-2217	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
163901	chr3	52526071	52526230	+	0	NA	intron (NM_022908, intron 10 of 13)	intron (NM_022908, intron 10 of 13)	7707	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
171982	chr4	926921	928200	+	0	NA	intron (NM_005255, intron 1 of 27)	CpG	4756	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
198737	chr6	108526751	108527050	+	0	NA	TTS (NM_145315)	TTS (NM_145315)	-32925	NM_201559	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
115402	chr19	15283651	15284130	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-3439	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
151021	chr21	44487621	44488150	+	0	NA	intron (NR_155204, intron 1 of 1)	L1PA3|LINE|L1	2314	NR_155204	111216286		NR_155204		LINC02575	-	long intergenic non-protein coding RNA 2575	ncRNA
31474	chr10	96556071	96556450	+	0	NA	intron (NM_020123, intron 5 of 14)	intron (NM_020123, intron 5 of 14)	30752	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
105725	chr18	2716321	2717680	+	0	NA	intron (NM_015295, intron 17 of 47)	L1M2|LINE|L1	61274	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
171213	chr3	195753121	195753380	+	0	NA	intron (NM_018406, intron 19 of 24)	intron (NM_018406, intron 19 of 24)	32272	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
223178	chr8	143557151	143557250	+	0	NA	non-coding (NR_147504, exon 1 of 1)	non-coding (NR_147504, exon 1 of 1)	1071	NR_147504	100310756		NR_147504	ENSG00000289161	LOC100310756	-	uncharacterized LOC100310756	ncRNA
97438	chr17	43547851	43547950	+	0	NA	Intergenic	L2c|LINE|L2	-1560	NM_001261437	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
190230	chr5	178246901	178247100	+	0	NA	intron (NM_173465, intron 22 of 28)	intron (NM_173465, intron 22 of 28)	-14178	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
28171	chr10	43671551	43671950	+	0	NA	non-coding (NR_038867, exon 3 of 5)	non-coding (NR_038867, exon 3 of 5)	-22869	NM_006973	7580		NM_006973	ENSG00000169740	ZNF32	KOX30|ZNF637|Zfp637	zinc finger protein 32	protein-coding
213507	chr7	139064221	139065850	+	0	NA	intron (NM_020119, intron 7 of 12)	intron (NM_020119, intron 7 of 12)	-20878	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
120137	chr19	42209621	42210380	+	0	NA	intron (NM_001270615, intron 3 of 4)	L1MC4a|LINE|L1	7677	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
55493	chr12	104740501	104741100	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	149167	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
136520	chr2	177250371	177250930	+	0	NA	intron (NM_001313902, intron 1 of 3)	MIR|SINE|MIR	5360	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
221198	chr8	120749121	120750550	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-11418	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
139723	chr2	229180751	229180930	+	0	NA	intron (NM_001100818, intron 1 of 2)	LSU-rRNA_Hsa|rRNA|rRNA	51252	NM_001330156	55022		NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
70535	chr14	102506571	102506730	+	0	NA	3' UTR (NM_152326, exon 4 of 4)	3' UTR (NM_152326, exon 4 of 4)	3126	NM_152326	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
41367	chr11	65976871	65978080	+	0	NA	intron (NM_005146, intron 15 of 19)	intron (NM_005146, intron 15 of 19)	15741	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
206073	chr7	27175251	27175350	+	0	NA	promoter-TSS (NM_018951)	promoter-TSS (NM_018951)	-980	NM_018951	3206		NM_018951	ENSG00000253293	HOXA10	HOX1|HOX1.8|HOX1H|PL	homeobox A10	protein-coding
36009	chr11	2898351	2899250	+	0	NA	promoter-TSS (NM_183233)	promoter-TSS (NM_183233)	-891	NM_183233	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
63216	chr13	113841171	113842730	+	0	NA	intron (NM_000820, intron 4 of 14)	intron (NM_000820, intron 4 of 14)	22126	NM_000820	2621		NM_000820	ENSG00000183087	GAS6	AXLLG|AXSF	growth arrest specific 6	protein-coding
53359	chr12	64657651	64658450	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJb|SINE|Alu	-35445	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52839	chr12	57085671	57086190	+	0	NA	Intergenic	Intergenic	-3184	NM_001330305	4665		NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding
119771	chr19	41301871	41303580	+	0	NA	exon (NM_007040, exon 12 of 15)	exon (NM_007040, exon 12 of 15)	-7447	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
161366	chr3	40476721	40477650	+	0	NA	promoter-TSS (NM_173656)	promoter-TSS (NM_173656)	63	NM_001363277	285267		NM_173656	ENSG00000177873	ZNF619	-	zinc finger protein 619	protein-coding
133013	chr2	111702121	111702530	+	0	NA	Intergenic	Intergenic	68809	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
31732	chr10	97716471	97716630	+	0	NA	intron (NM_031484, intron 1 of 1)	intron (NM_031484, intron 1 of 1)	2820	NM_031484	83742		NM_031484	ENSG00000155254	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
54607	chr12	92553351	92554000	+	0	NA	Intergenic	Intergenic	86996	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
65958	chr14	56115851	56116780	+	0	NA	Intergenic	Intergenic	-2096	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
73691	chr15	44922671	44923030	+	0	NA	Intergenic	Intergenic	-33837	NM_152448	145645		NM_152448	ENSG00000167014	TERB2	C15orf43|SPGF59	telomere repeat binding bouquet formation protein 2	protein-coding
28878	chr10	62735771	62736300	+	0	NA	Intergenic	Intergenic	-68685	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
512	chr1	1205851	1205950	+	0	NA	intron (NM_148901, intron 1 of 3)	intron (NM_148901, intron 1 of 3)	692	NM_148902	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
7956	chr1	37603071	37603480	+	0	NA	Intergenic	Intergenic	-7290	NM_001323624	29889		NM_013285	ENSG00000134697	GNL2	HUMAUANTIG|NGP1|Ngp-1|Nog2|Nug2	G protein nucleolar 2	protein-coding
172107	chr4	1086651	1087750	+	0	NA	intron (NM_001131034, intron 4 of 9)	intron (NM_001131034, intron 4 of 9)	26364	NR_159498	285498		NM_194439	ENSG00000178222	RNF212	SPGF62|ZHP3	ring finger protein 212	protein-coding
197115	chr6	57223951	57224250	+	0	NA	Intergenic	L1MB3|LINE|L1	-1786	NM_001278667	51715		NM_016277	ENSG00000112210	RAB23	HSPC137	RAB23, member RAS oncogene family	protein-coding
220705	chr8	101803851	101803950	+	0	NA	intron (NM_001040628, intron 4 of 7)	Tigger1|DNA|TcMar-Tigger	-12931	NM_032041	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
131732	chr2	98348301	98348500	+	0	NA	intron (NM_001079878, intron 1 of 6)	intron (NM_001079878, intron 1 of 6)	1944	NM_001298	1261		NM_001298	ENSG00000144191	CNGA3	ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3	cyclic nucleotide gated channel subunit alpha 3	protein-coding
203084	chr6	166340051	166340150	+	0	NA	intron (NR_130113, intron 1 of 6)	L2a|LINE|L2	2445	NR_130113	113402		NM_145169	ENSG00000198818	SFT2D1	C6orf83|pRGR1	SFT2 domain containing 1	protein-coding
123969	chr19	55410701	55411300	+	0	NA	Intergenic	Intergenic	-3212	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
169172	chr3	156680751	156681450	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	4436	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
190384	chr5	179788871	179789030	+	0	NA	Intergenic	AluSq|SINE|Alu	-5036	NM_145867	4056		NM_000897	ENSG00000213316	LTC4S	-	leukotriene C4 synthase	protein-coding
96800	chr17	41875301	41875700	+	0	NA	intron (NM_001096, intron 22 of 28)	SVA_D|Retroposon|SVA	-10077	NM_018143	55175		NM_018143	ENSG00000178502	KLHL11	-	kelch like family member 11	protein-coding
145756	chr20	45290751	45291630	+	0	NA	Intergenic	Intergenic	-15650	NM_014276	11317		NM_014276	ENSG00000124232	RBPJL	RBPL|RBPSUHL|SUHL	recombination signal binding protein for immunoglobulin kappa J region like	protein-coding
212934	chr7	130930151	130931230	+	0	NA	Intergenic	Intergenic	17226	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
139624	chr2	225229151	225229680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-170295	NM_001371273	57624		NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding
178666	chr4	152499401	152499800	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	-10184	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
233289	chr9	137316401	137317200	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-14529	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
103287	chr17	77835701	77835900	+	0	NA	Intergenic	AluSx3|SINE|Alu	48287	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
4543	chr1	22022621	22023330	+	0	NA	Intergenic	L2b|LINE|L2	-2216	NR_023918	29092		NM_014179	ENSG00000218510	LINC00339	HSPC157|NCRNA00339	long intergenic non-protein coding RNA 339	ncRNA
194813	chr6	34247571	34247730	+	0	NA	intron (NM_001008704, intron 2 of 4)	intron (NM_001008704, intron 2 of 4)	1356	NM_001008703	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
96461	chr17	40226251	40226350	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSx3|SINE|Alu	6996	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
41678	chr11	66618521	66620080	+	0	NA	intron (NM_001198846, intron 1 of 1)	intron (NM_001198846, intron 1 of 1)	2670	NM_006328	10432		NM_006328	ENSG00000239306	RBM14	COAA|PSP2|SIP|SYTIP1|TMEM137	RNA binding motif protein 14	protein-coding
223062	chr8	143387821	143388080	+	0	NA	Intergenic	Intergenic	19074	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
222631	chr8	141107421	141108080	+	0	NA	Intergenic	Intergenic	-20839	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
208632	chr7	72989621	72989880	+	0	NA	Intergenic	Intergenic	16193	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
129973	chr2	73989121	73989530	+	0	NA	intron (NM_001287491, intron 2 of 11)	intron (NM_001287491, intron 2 of 11)	4415	NM_001287491	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
207424	chr7	44486671	44486830	+	0	NA	intron (NM_015332, intron 1 of 5)	intron (NM_015332, intron 1 of 5)	3908	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
27593	chr10	32433721	32434180	+	0	NA	TTS (NR_120660)	TTS (NR_120660)	12106	NR_120660	101929431		NR_120660		LOC101929431	-	uncharacterized LOC101929431	ncRNA
12184	chr1	100369751	100370250	+	0	NA	intron (NM_001319210, intron 2 of 16)	AluJo|SINE|Alu	17494	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
177009	chr4	105715721	105716300	+	0	NA	intron (NM_001031720, intron 1 of 11)	intron (NM_001031720, intron 1 of 11)	5197	NM_001031720	79807		NM_024751	ENSG00000138780	GSTCD	-	glutathione S-transferase C-terminal domain containing	protein-coding
35298	chr11	994871	995630	+	0	NA	intron (NR_144509, intron 14 of 20)	intron (NR_144509, intron 14 of 20)	41468	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
121948	chr19	48467751	48467850	+	0	NA	TTS (NM_013348)	TTS (NM_013348)	-1408	NM_017457	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
105892	chr18	3270771	3271200	+	0	NA	intron (NM_001144945, intron 1 of 3)	intron (NM_001144945, intron 1 of 3)	8266	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
93035	chr17	17285051	17285550	+	0	NA	Intergenic	AluYk4|SINE|Alu	-3997	NM_001316354	8533		NM_003653	ENSG00000141030	COPS3	CSN3|SGN3	COP9 signalosome subunit 3	protein-coding
34747	chr10	133785771	133787400	+	0	NA	Intergenic	TAR1|Satellite|telo	-159790	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
155458	chr22	38477821	38478950	+	0	NA	intron (NM_006855, intron 2 of 4)	AluSx|SINE|Alu	10289	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
127035	chr2	37156201	37157830	+	0	NA	promoter-TSS (NM_002759)	promoter-TSS (NM_002759)	32	NM_002759	5610		NM_002759	ENSG00000055332	EIF2AK2	DYT33|EIF2AK1|LEUDEN|PKR|PPP1R83|PRKR	eukaryotic translation initiation factor 2 alpha kinase 2	protein-coding
68741	chr14	91021301	91021500	+	0	NA	intron (NM_001322228, intron 1 of 15)	AluJo|SINE|Alu	38724	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
71434	chr14	105650951	105651250	+	0	NA	Intergenic	Intergenic	10932	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
224552	chr9	19378671	19378830	+	0	NA	exon (NM_001010, exon 3 of 6)	exon (NM_001010, exon 3 of 6)	1486	NM_001010	6194		NM_001010	ENSG00000137154	RPS6	S6|eS6	ribosomal protein S6	protein-coding
112910	chr19	7643371	7644650	+	0	NA	intron (NM_006949, intron 13 of 18)	intron (NM_006949, intron 13 of 18)	6900	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
117355	chr19	19544621	19545080	+	0	NA	exon (NM_153221, exon 8 of 8)	exon (NM_153221, exon 8 of 8)	6585	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
152990	chr22	23152501	23152700	+	0	NA	intron (NM_004914, intron 4 of 10)	intron (NM_004914, intron 4 of 10)	7123	NR_146295	9609		NM_004914	ENSG00000100228	RAB36	-	RAB36, member RAS oncogene family	protein-coding
67522	chr14	70992271	70992630	+	0	NA	intron (NM_014982, intron 7 of 35)	L2a|LINE|L2	84991	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
124261	chr19	57726051	57726150	+	0	NA	intron (NM_001321376, intron 1 of 4)	AluSx1|SINE|Alu	1524	NM_001321375	79891		NM_024833	ENSG00000083814	ZNF671	-	zinc finger protein 671	protein-coding
89269	chr16	88667201	88667650	+	0	NA	intron (NR_024399, intron 1 of 3)	AluJb|SINE|Alu	4052	NR_024399	197187		NM_144986	ENSG00000260630	SNAI3-AS1	-	SNAI3 antisense RNA 1	ncRNA
212078	chr7	115024171	115024530	+	0	NA	Intergenic	LTR33|LTR|ERVL	-54608	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
189477	chr5	173082671	173083080	+	0	NA	intron (NM_153607, intron 2 of 8)	AluSz|SINE|Alu	26523	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
171495	chr3	196604201	196604840	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	28067	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
178698	chr4	152553871	152555100	+	0	NA	Intergenic	Intergenic	18057	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
83082	chr16	22430501	22431180	+	0	NA	intron (NR_027460, intron 4 of 6).2	L1ME3C|LINE|L1	-6168	NR_027154	641298		NM_199284	ENSG00000237296	SMG1P1	-	SMG1 pseudogene 1	pseudo
160201	chr3	23830471	23831380	+	0	NA	intron (NM_003341, intron 3 of 5)	MIR|SINE|MIR	20471	NM_001202476	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
232492	chr9	136255671	136255830	+	0	NA	intron (NM_001378188, intron 24 of 25)	intron (NM_001378188, intron 24 of 25)	-9938	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
187679	chr5	143261801	143262000	+	0	NA	Intergenic	Intergenic	69400	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
177303	chr4	109641571	109641730	+	0	NA	intron (NM_017918, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	61795	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
142991	chr20	20237321	20237580	+	0	NA	intron (NM_015585, intron 18 of 26)	intron (NM_015585, intron 18 of 26)	-130654	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
92559	chr17	8985301	8985700	+	0	NA	Intergenic	L1M4|LINE|L1	-19788	NM_001251853	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
140647	chr2	233569551	233569850	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-2918	NM_001382299	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
71252	chr14	105199401	105199700	+	0	NA	Intergenic	Intergenic	-18227	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
56894	chr12	120324401	120324600	+	0	NA	intron (NM_000928, intron 3 of 3)	AluJr|SINE|Alu	3279	NM_000928	5319		NM_000928	ENSG00000170890	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2 group IB	protein-coding
190017	chr5	177491121	177492930	+	0	NA	intron (NR_103804, intron 4 of 12)	CpG-22871	5579	NR_103804	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
221166	chr8	119982021	119982800	+	0	NA	intron (NM_001283012, intron 2 of 6)	intron (NM_001283012, intron 2 of 6)	108688	NM_022783	64798		NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6|hDEPTOR	DEP domain containing MTOR interacting protein	protein-coding
25858	chr10	11240251	11241400	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	75795	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
115620	chr19	16083151	16083850	+	0	NA	intron (NM_001367837, intron 2 of 7)	intron (NM_001367837, intron 2 of 7)	6484	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
133319	chr2	113890701	113891600	+	0	NA	promoter-TSS (NR_110174)	promoter-TSS (NR_110174)	-158	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128519	chr2	60642321	60642600	+	0	NA	Intergenic	Intergenic	-88806	NM_022893	53335		NM_018014	ENSG00000119866	BCL11A	CTIP1|DILOS|EVI9|HBFQTL5|SMARCM1|ZNF856	BCL11 transcription factor A	protein-coding
203317	chr6	170154051	170154350	+	0	NA	Intergenic	Intergenic	-6442	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
121660	chr19	47493021	47494400	+	0	NA	intron (NR_038452, intron 2 of 3)	intron (NR_038452, intron 2 of 3)	9428	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
215126	chr7	155372171	155372800	+	0	NA	Intergenic	CpG	-4552	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
60280	chr13	40620551	40621150	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSx1|SINE|Alu	45791	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
136377	chr2	176111301	176111900	+	0	NA	Intergenic	Intergenic	4320	NM_021192	3237		NM_021192	ENSG00000128713	HOXD11	HOX4|HOX4F	homeobox D11	protein-coding
237447	chrX	119687821	119688330	+	0	NA	intron (NM_145799, intron 1 of 10)	L2b|LINE|L2	5093	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
116241	chr19	17546571	17547130	+	0	NA	intron (NM_173544, intron 14 of 15)	intron (NM_173544, intron 14 of 15)	-8799	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
68978	chr14	91458201	91458780	+	0	NA	non-coding (NR_169192, exon 16 of 16)	non-coding (NR_169192, exon 16 of 16)	-40670	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
206379	chr7	30681851	30683200	+	0	NA	promoter-TSS (NM_001883)	promoter-TSS (NM_001883)	0	NM_001202482	1395		NM_001883	ENSG00000106113	CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
107449	chr18	46338801	46339000	+	0	NA	intron (NM_001256758, intron 1 of 5)	intron (NM_001256758, intron 1 of 5)	4676	NM_001256758	494470		NM_152470	ENSG00000141622	ARK2C	ARKL2|RNF111L2|RNF165|lncAMPC	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C	protein-coding
98137	chr17	46017101	46017700	+	0	NA	intron (NR_165166, intron 8 of 9)	AluSx|SINE|Alu	18150	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
161398	chr3	41215101	41216500	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	16295	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
231051	chr9	129629951	129630250	+	0	NA	intron (NM_001286799, intron 1 of 3)	intron (NM_001286799, intron 1 of 3)	3656	NM_001286799	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
72636	chr15	38483451	38483930	+	0	NA	intron (NM_173611, intron 7 of 7)	(AT)n|Simple_repeat|Simple_repeat	29563	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
169404	chr3	160784751	160785250	+	0	NA	intron (NM_139245, intron 1 of 3)	intron (NM_139245, intron 1 of 3)	28769	NM_139245	151742		NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
229372	chr9	121076751	121076850	+	0	NA	intron (NM_001369894, intron 1 of 29)	intron (NM_001369894, intron 1 of 29)	1845	NM_001369896	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
121589	chr19	47315401	47315600	+	0	NA	intron (NM_001736, intron 1 of 1)	intron (NM_001736, intron 1 of 1)	5639	NM_001736	728		NM_001736	ENSG00000197405	C5AR1	C5A|C5AR|C5R1|CD88	complement C5a receptor 1	protein-coding
36663	chr11	8080951	8081680	+	0	NA	5' UTR (NM_177972, exon 1 of 12)	5' UTR (NM_177972, exon 1 of 12)	104	NM_177972	7275		NM_003320	ENSG00000166402	TUB	RDOB|rd5	TUB bipartite transcription factor	protein-coding
152646	chr22	21534571	21535250	+	0	NA	Intergenic	Intergenic	-14537	NM_001256355	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
21159	chr1	203701821	203702420	+	0	NA	intron (NM_001365783, intron 7 of 20)	intron (NM_001365783, intron 7 of 20)	-27461	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
25151	chr10	4815231	4816580	+	0	NA	Intergenic	Intergenic	-10272	NR_073127	83592		NM_031436	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|HTSP1|LoopADR|TAKR|hTSP|htAKR	aldo-keto reductase family 1 member E2	protein-coding
44509	chr11	107022451	107022550	+	0	NA	Intergenic	Intergenic	-4024	NM_001256424	2977		NM_000855	ENSG00000152402	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1 soluble subunit alpha 2	protein-coding
213886	chr7	142438251	142438650	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-36077	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
144482	chr20	35624301	35624700	+	0	NA	Intergenic	AluSx|SINE|Alu	8616	NM_001317931	6676		NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
167252	chr3	128559601	128559800	+	0	NA	Intergenic	L1MC3|LINE|L1	16386	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
222709	chr8	141307621	141309000	+	0	NA	promoter-TSS (NM_001286646)	promoter-TSS (NM_001286646)	-22	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
158824	chr3	9751621	9751880	+	0	NA	intron (NM_016820, intron 2 of 6)	intron (NM_016820, intron 2 of 6)	1806	NM_016820	4968		NM_002542	ENSG00000114026	OGG1	HMMH|HOGG1|MUTM|OGH1	8-oxoguanine DNA glycosylase	protein-coding
109647	chr19	1003971	1004730	+	0	NA	intron (NM_138690, intron 2 of 8)	CpG	3931	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
234981	chrX	39491521	39491930	+	0	NA	Intergenic	Intergenic	-99951	NR_110385	101927449		NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
160080	chr3	18772801	18773000	+	0	NA	Intergenic	Intergenic	-327308	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
63524	chr13	114320271	114320430	+	0	NA	intron (NM_001164145, intron 1 of 2)	intron (NM_001164145, intron 1 of 2)	5847	NM_001164144	283489		NM_032436	ENSG00000198824	CHAMP1	C13orf8|CAMP|CHAMP|MRD40|NEDHILD|ZNF828	chromosome alignment maintaining phosphoprotein 1	protein-coding
5051	chr1	24555621	24556700	+	0	NA	promoter-TSS (NR_109781)	promoter-TSS (NR_109781)	73	NM_001010980	400746		NM_001010980	ENSG00000184454	NCMAP	C1orf130|MP11	non-compact myelin associated protein	protein-coding
67726	chr14	73495621	73495880	+	0	NA	intron (NM_203309, intron 14 of 16)	intron (NM_203309, intron 14 of 16)	4817	NM_024644	79697		NM_024644	ENSG00000170468	RIOX1	C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66	ribosomal oxygenase 1	protein-coding
121355	chr19	46830021	46830300	+	0	NA	TTS (NR_024258)	TTS (NR_024258)	544	NR_024258	100170220		NR_024258		SNAR-E	-	small NF90 (ILF3) associated RNA E	snRNA
193637	chr6	30814121	30814850	+	0	NA	non-coding (NR_130726, exon 2 of 2)	non-coding (NR_130726, exon 2 of 2)	16174	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
223236	chr8	143613821	143614550	+	0	NA	exon (NM_001317783, exon 7 of 11)	exon (NM_001317783, exon 7 of 11)	3364	NM_003313	7264		NM_003313	ENSG00000104522	GFUS	FX|P35B|SDR4E1|TSTA3	GDP-L-fucose synthase	protein-coding
118152	chr19	35012031	35013410	+	0	NA	intron (NM_001320035, intron 7 of 17)	AluSg|SINE|Alu	12397	NM_001136199	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
102104	chr17	74991371	74991730	+	0	NA	intron (NM_014603, intron 1 of 4)	AluY|SINE|Alu	3918	NM_014603	30850		NM_014603	ENSG00000109089	CDR2L	HUMPPA	cerebellar degeneration related protein 2 like	protein-coding
224756	chr9	21965001	21966150	+	0	NA	Intergenic	CpG	-1564	NR_024274	51198		NM_016349		CDKN2A-AS1	C9orf53|CDKN2A-DT|bA149I2.3	CDKN2A antisense RNA 1	ncRNA
86474	chr16	66960871	66961380	+	0	NA	promoter-TSS (NM_024922)	promoter-TSS (NM_024922)	-141	NM_001185177	23491		NM_012122	ENSG00000172828	CES3	ES31	carboxylesterase 3	protein-coding
149680	chr21	33914301	33914650	+	0	NA	exon (NM_001697, exon 2 of 7)	exon (NM_001697, exon 2 of 7)	1329	NM_001697	539		NM_001697	ENSG00000241837	ATP5PO	ATP5O|ATPO|HMC08D05|MC5DN7|OSCP	ATP synthase peripheral stalk subunit OSCP	protein-coding
111035	chr19	3091021	3091750	+	0	NA	Intergenic	L2b|LINE|L2	-2977	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
16429	chr1	154560571	154560730	+	0	NA	Intergenic	MIR|SINE|MIR	-1988	NM_017582	55585		NM_017582	ENSG00000160714	UBE2Q1	GTAP|NICE-5|NICE5|PRO3094|UBE2Q	ubiquitin conjugating enzyme E2 Q1	protein-coding
48196	chr12	8038521	8039200	+	0	NA	intron (NM_018416, intron 1 of 10)	intron (NM_018416, intron 1 of 10)	6144	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
45378	chr11	118309601	118309800	+	0	NA	intron (NM_000733, intron 4 of 8)	MIR|SINE|MIR	4970	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
230710	chr9	128783601	128783800	+	0	NA	Intergenic	L1MB4|LINE|L1	-3507	NM_001286772	54662		NM_018201	ENSG00000107021	TBC1D13	-	TBC1 domain family member 13	protein-coding
69643	chr14	97788571	97789250	+	0	NA	Intergenic	MIR|SINE|MIR	-26079	NR_146447	100132612		NR_146447	ENSG00000258869	LINC02312	-	long intergenic non-protein coding RNA 2312	ncRNA
216401	chr8	17961371	17961530	+	0	NA	intron (NR_148032, intron 15 of 38)	AluYi6_4d|SINE|Alu	38462	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
159681	chr3	15468021	15468450	+	0	NA	intron (NM_080538, intron 11 of 16)	intron (NM_080538, intron 11 of 16)	28073	NR_036232	100422868		NR_036232	ENSG00000263573	MIR4270	-	microRNA 4270	ncRNA
137207	chr2	191202621	191203380	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-42404	NM_001330237	4430		NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
226454	chr9	71711521	71711780	+	0	NA	intron (NM_001135820, intron 15 of 22)	intron (NM_001135820, intron 15 of 22)	56863	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
173330	chr4	7649321	7651130	+	0	NA	intron (NM_020777, intron 4 of 26)	MIRb|SINE|MIR	-103865	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
207209	chr7	43646551	43647180	+	0	NA	3' UTR (NM_001321202, exon 4 of 4)	3' UTR (NM_001321202, exon 4 of 4)	63757	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
185014	chr5	115298651	115299080	+	0	NA	Intergenic	L2|LINE|L2	-2211	NM_001375899	153733		NM_152549	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
168751	chr3	151200971	151201680	+	0	NA	intron (NM_013308, intron 1 of 2)	intron (NM_013308, intron 1 of 2)	1891	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
154949	chr22	37242101	37243300	+	0	NA	intron (NM_002872, intron 1 of 6)	intron (NM_002872, intron 1 of 6)	1569	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
3501	chr1	16042351	16042650	+	0	NA	Intergenic	Intergenic	-1282	NM_000085	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
65812	chr14	54870201	54871030	+	0	NA	intron (NM_001024024, intron 1 of 6)	L1PA4|LINE|L1	7578	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
87084	chr16	68447951	68449280	+	0	NA	promoter-TSS (NM_018667)	promoter-TSS (NM_018667)	-107	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
149569	chr21	33235851	33235950	+	0	NA	intron (NM_001385055, intron 1 of 9)	AluY|SINE|Alu	5962	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
94686	chr17	30644421	30645150	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	20467	NR_033420	6459		NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2	pseudo
146584	chr20	50105801	50106000	+	0	NA	intron (NM_001257399, intron 1 of 4)	AluSg|SINE|Alu	7250	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
88853	chr16	87635021	87636000	+	0	NA	intron (NM_020655, intron 1 of 4)	intron (NM_020655, intron 1 of 4)	33002	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
237004	chrX	102125201	102126280	+	0	NA	promoter-TSS (NM_080390)	promoter-TSS (NM_080390)	61	NM_080390	140597		NM_080390	ENSG00000184905	TCEAL2	MY0876G05|WEX1|my048	transcription elongation factor A like 2	protein-coding
30603	chr10	80186271	80186880	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	17916	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
120028	chr19	41952671	41952900	+	0	NA	Intergenic	AluJb|SINE|Alu	6536	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
176273	chr4	87059651	87059950	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	52799	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
53651	chr12	68333721	68334350	+	0	NA	Intergenic	Intergenic	-1621	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
184788	chr5	111072671	111073700	+	0	NA	promoter-TSS (NM_138551)	promoter-TSS (NM_138551)	-189	NM_138551	85480		NM_033035	ENSG00000145777	TSLP	-	thymic stromal lymphopoietin	protein-coding
217166	chr8	26295721	26296450	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	2869	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
169047	chr3	153161901	153163450	+	0	NA	5' UTR (NM_002886, exon 1 of 1)	5' UTR (NM_002886, exon 1 of 1)	449	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
45667	chr11	119025051	119025450	+	0	NA	exon (NM_001467, exon 9 of 10)	exon (NM_001467, exon 9 of 10)	4230	NM_001164280	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
200186	chr6	130843521	130843900	+	0	NA	intron (NM_001350306, intron 17 of 17)	intron (NM_001350306, intron 17 of 17)	16304	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
117660	chr19	24030801	24031000	+	0	NA	Intergenic	Intergenic	-2505	NM_001278661	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
237331	chrX	118502871	118503730	+	0	NA	intron (NM_144658, intron 1 of 52)	AluSq2|SINE|Alu	7391	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
136093	chr2	173436151	173436250	+	0	NA	Intergenic	Intergenic	81328	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
214119	chr7	144192971	144193530	+	0	NA	intron (NM_001368318, intron 1 of 1)	intron (NM_001368318, intron 1 of 1)	-2071	NR_126022	101928605		NR_126022		ARHGEF35-AS1	-	ARHGEF35 antisense RNA 1	ncRNA
18442	chr1	161523001	161523200	+	0	NA	Intergenic	Intergenic	-1440	NM_002155	3310		NM_002155	ENSG00000173110	HSPA6	HSP70B'	heat shock protein family A (Hsp70) member 6	protein-coding
100680	chr17	63776151	63776250	+	0	NA	intron (NM_007372, intron 2 of 18)	intron (NM_007372, intron 2 of 18)	2011	NM_007372	11325		NM_007372	ENSG00000198231	DDX42	DDX42P|RHELP|RNAHP|SF3B8|SF3b125	DEAD-box helicase 42	protein-coding
73399	chr15	42650471	42650780	+	0	NA	intron (NM_020759, intron 7 of 32)	intron (NM_020759, intron 7 of 32)	75019	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
233853	chrX	1515621	1515880	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	21435	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
173284	chr4	7061601	7062430	+	0	NA	intron (NM_025196, intron 3 of 3)	MIRc|SINE|MIR	6049	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
143573	chr20	31666071	31667730	+	0	NA	intron (NM_001191, intron 2 of 2)	intron (NM_001191, intron 2 of 2)	28988	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
192554	chr6	25366521	25367750	+	0	NA	intron (NM_001173977, intron 2 of 36)	intron (NM_001173977, intron 2 of 36)	87761	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
24682	chr1	247171101	247172280	+	0	NA	intron (NM_003431, intron 1 of 3)	CpG	327	NM_001297567	7678		NM_003431	ENSG00000196418	ZNF124	HZF-16|HZF16|ZK7	zinc finger protein 124	protein-coding
117589	chr19	21677721	21678280	+	0	NA	Intergenic	CpG	28332	NR_144514	400682		NR_144514		LOC400682	-	zinc finger protein 100-like	pseudo
195271	chr6	36485871	36486030	+	0	NA	intron (NM_173562, intron 7 of 7)	AluJo|SINE|Alu	42950	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
230567	chr9	128502701	128503030	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluSx1|SINE|Alu	-1827	NM_001499	2733		NM_001499	ENSG00000119392	GLE1	CAAHC|CAAHD|GLE1L|LCCS|LCCS1|hGLE1	GLE1 RNA export mediator	protein-coding
75453	chr15	65832551	65833330	+	0	NA	Intergenic	Intergenic	-36551	NM_004663	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
22759	chr1	224385601	224385800	+	0	NA	3' UTR (NM_025160, exon 14 of 14)	3' UTR (NM_025160, exon 14 of 14)	12611	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
9737	chr1	53222701	53222900	+	0	NA	Intergenic	L1M1|LINE|L1	-2161	NM_001304759	54987		NM_017887	ENSG00000162384	CZIB	C1orf123	CXXC motif containing zinc binding protein	protein-coding
100569	chr17	62793351	62794650	+	0	NA	intron (NM_001288779, intron 2 of 11)	(CAC)n|Simple_repeat|Simple_repeat	12640	NM_001100875	162333		NM_152598	ENSG00000173838	MARCHF10	MARCH-X|MARCH10|RNF190	membrane associated ring-CH-type finger 10	protein-coding
31536	chr10	96891571	96892080	+	0	NA	intron (NM_032440, intron 2 of 7)	AluSx|SINE|Alu	58880	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
171778	chr4	208651	208950	+	0	NA	Intergenic	Intergenic	-3800	NR_027481	642280		NM_001039758	ENSG00000290382	ZNF876P	-	zinc finger protein 876, pseudogene	pseudo
136399	chr2	176135821	176136150	+	0	NA	promoter-TSS (NR_148241)	promoter-TSS (NR_148241)	-627	NR_148241	401021		NR_148241		LOC401021	-	uncharacterized LOC401021	ncRNA
138881	chr2	217433901	217434350	+	0	NA	intron (NR_026597, intron 3 of 12)	(AGA)n|Simple_repeat|Simple_repeat	151392	NR_133642	105373877		NR_133642		DIRC3-AS1	-	DIRC3 antisense RNA 1	ncRNA
206397	chr7	30974771	30975100	+	0	NA	intron (NM_000823, intron 8 of 12)	intron (NM_000823, intron 8 of 12)	10982	NM_000823	2692		NM_000823	ENSG00000106128	GHRHR	GHRFR|GRFR|IGHD1B|IGHD4	growth hormone releasing hormone receptor	protein-coding
191382	chr6	7542371	7542530	+	0	NA	intron (NM_001319034, intron 1 of 23)	CpG	779	NM_001319034	1832		NM_004415	ENSG00000096696	DSP	DCWHKTA|DP	desmoplakin	protein-coding
182642	chr5	67160001	67160530	+	0	NA	intron (NM_015183, intron 25 of 27)	intron (NM_015183, intron 25 of 27)	36534	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
153241	chr22	24009301	24009500	+	0	NA	Intergenic	LTR25|LTR|ERV1	-1904	NM_012295	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
32132	chr10	101237471	101237900	+	0	NA	intron (NR_029380, intron 2 of 2)	MIRc|SINE|MIR	8091	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
57845	chr12	123263451	123263750	+	0	NA	intron (NM_004642, intron 3 of 3)	intron (NM_004642, intron 3 of 3)	4654	NM_001270434	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
78325	chr15	90958871	90959430	+	0	NA	intron (NM_033544, intron 5 of 8)	MIR|SINE|MIR	4274	NM_033544	91433		NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
176540	chr4	98263501	98264080	+	0	NA	intron (NM_001100427, intron 1 of 14)	intron (NM_001100427, intron 1 of 14)	2406	NM_001100428	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
169229	chr3	157134271	157134430	+	0	NA	Intergenic	Intergenic	-11348	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
78473	chr15	92896401	92898180	+	0	NA	intron (NR_037600, intron 4 of 4)	intron (NR_037600, intron 4 of 4)	-3034	NM_001271	1106		NM_001271	ENSG00000173575	CHD2	DEE94|EEOC	chromodomain helicase DNA binding protein 2	protein-coding
179743	chr5	234871	235230	+	0	NA	intron (NM_001330758, intron 8 of 12)	intron (NM_001330758, intron 8 of 12)	16730	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
55569	chr12	106237301	106237500	+	0	NA	TTS (NM_006825)	TTS (NM_006825)	10620	NM_006825	10970		NM_006825	ENSG00000136026	CKAP4	CLIMP-63|CLIMP63|ERGIC-63|p63	cytoskeleton associated protein 4	protein-coding
168939	chr3	152364671	152364830	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-23760	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
95916	chr17	38909521	38910730	+	0	NA	intron (NM_006148, intron 4 of 6)	intron (NM_006148, intron 4 of 6)	-4854	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
51561	chr12	52569521	52569780	+	0	NA	intron (NM_175053, intron 6 of 8)	MIR3|SINE|MIR	4193	NM_175053	121391		NM_175053	ENSG00000170484	KRT74	ADWH|ECTD7|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4	keratin 74	protein-coding
217198	chr8	26325921	26326180	+	0	NA	intron (NM_002717, intron 2 of 9)	AluJb|SINE|Alu	32834	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
186135	chr5	134157251	134157550	+	0	NA	3' UTR (NM_006930, exon 5 of 5)	3' UTR (NM_006930, exon 5 of 5)	19550	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
225482	chr9	35618171	35618630	+	0	NA	promoter-TSS (NM_001782)	promoter-TSS (NM_001782)	13	NM_001782	971		NM_001782	ENSG00000137101	CD72	CD72b|LYB2	CD72 molecule	protein-coding
97793	chr17	44767551	44767850	+	0	NA	intron (NM_001318933, intron 2 of 26)	intron (NM_001318933, intron 2 of 26)	8712	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
130633	chr2	86078771	86079230	+	0	NA	intron (NM_015425, intron 9 of 33)	intron (NM_015425, intron 9 of 33)	26886	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
49740	chr12	31705601	31706000	+	0	NA	intron (NR_103523, intron 1 of 5)	MER83|LTR|ERV1	23221	NM_001113402	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
55738	chr12	108332501	108333460	+	0	NA	intron (NM_004072, intron 1 of 2)	AluJb|SINE|Alu	6331	NM_001142343	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
85873	chr16	57044921	57046250	+	0	NA	intron (NM_001384960, intron 20 of 45)	intron (NM_001384960, intron 20 of 45)	-46998	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
198312	chr6	100664321	100664950	+	0	NA	intron (NM_006828, intron 14 of 41)	intron (NM_006828, intron 14 of 41)	-199714	NM_005068	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
131811	chr2	98606821	98607080	+	0	NA	intron (NM_001008215, intron 1 of 2)	L2b|LINE|L2	1562	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
93258	chr17	17985451	17985800	+	0	NA	intron (NM_001130092, intron 4 of 12)	MER63A|DNA|hAT-Blackjack	12763	NM_001130091	83450		NM_031294	ENSG00000171962	DRC3	CFAP134|LRRC48	dynein regulatory complex subunit 3	protein-coding
228255	chr9	97992921	97993400	+	0	NA	intron (NM_006401, intron 1 of 6)	intron (NM_006401, intron 1 of 6)	9819	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
143240	chr20	25035921	25036480	+	0	NA	intron (NM_001252675, intron 2 of 13)	intron (NM_001252675, intron 2 of 13)	-3494	NM_001252676	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
30069	chr10	73870751	73871050	+	0	NA	intron (NR_160045, intron 1 of 17)	intron (NR_160045, intron 1 of 17)	3655	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
102565	chr17	75857351	75857750	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1114	NM_001348170	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
2667	chr1	10507351	10508030	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	32740	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
131536	chr2	96635671	96636080	+	0	NA	intron (NR_146099, intron 2 of 20)	AluSx|SINE|Alu	2116	NR_047658	55683		NM_017991	ENSG00000114982	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
154588	chr22	36277651	36278530	+	0	NA	Intergenic	Intergenic	8817	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
90895	chr17	2404301	2404700	+	0	NA	Intergenic	Intergenic	-3440	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
90401	chr17	1299671	1300000	+	0	NA	3' UTR (NM_172367, exon 3 of 3)	3' UTR (NM_172367, exon 3 of 3)	20173	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
145552	chr20	44207801	44208000	+	0	NA	intron (NM_016470, intron 1 of 3)	intron (NM_016470, intron 1 of 3)	2871	NM_016470	51526		NM_016470	ENSG00000132823	OSER1	C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1	oxidative stress responsive serine rich 1	protein-coding
179644	chr4	188563751	188563870	+	0	NA	intron (NR_033869, intron 4 of 4)	L1PA2|LINE|L1	108232	NR_033869	401164		NR_033869	ENSG00000249378	LINC01060	-	long intergenic non-protein coding RNA 1060	ncRNA
48358	chr12	9417221	9417500	+	0	NA	TTS (NR_033399)	TTS (NR_033399)	-9946	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
235872	chrX	51496101	51497300	+	0	NA	promoter-TSS (NM_018159)	promoter-TSS (NM_018159)	-108	NM_018159	55190		NM_018159	ENSG00000196368	NUDT11	APS1|ASP1|DIPP3b|DIPP3beta|hDIPP3beta	nudix hydrolase 11	protein-coding
51292	chr12	51241851	51242430	+	0	NA	intron (NM_001136269, intron 3 of 3)	intron (NM_001136269, intron 3 of 3)	3314	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
3068	chr1	12177321	12178700	+	0	NA	intron (NM_001066, intron 1 of 9)	MIRb|SINE|MIR	11019	NM_001066	7133		NM_001066	ENSG00000028137	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	TNF receptor superfamily member 1B	protein-coding
76854	chr15	77900051	77901250	+	0	NA	Intergenic	Intergenic	26196	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
132864	chr2	111055201	111055400	+	0	NA	intron (NM_001371254, intron 17 of 18)	intron (NM_001371254, intron 17 of 18)	60288	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
189499	chr5	173236121	173236580	+	0	NA	Intergenic	Intergenic	-1144	NM_004387	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
25912	chr10	11306901	11307300	+	0	NA	intron (NM_001326330, intron 9 of 12)	intron (NM_001326330, intron 9 of 12)	37574	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
185387	chr5	128084401	128085600	+	0	NA	intron (NR_046207, intron 1 of 26)	intron (NR_046207, intron 1 of 26)	1234	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
27469	chr10	32040671	32041080	+	0	NA	intron (NM_004521, intron 2 of 25)	AluSx3|SINE|Alu	15550	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
90860	chr17	2369251	2369550	+	0	NA	intron (NM_014853, intron 12 of 23)	intron (NM_014853, intron 12 of 23)	31660	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
187697	chr5	143359101	143359300	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	44083	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
11784	chr1	92486701	92487550	+	0	NA	promoter-TSS (NM_005263)	promoter-TSS (NM_005263)	-200	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
128471	chr2	57516771	57516930	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-390801	NM_001288838	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
117948	chr19	33238851	33238950	+	0	NA	Intergenic	Intergenic	-13050	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
50743	chr12	48991571	48992280	+	0	NA	Intergenic	AluSx3|SINE|Alu	-6422	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
102472	chr17	75729301	75729930	+	0	NA	intron (NM_001005619, intron 6 of 38)	intron (NM_001005619, intron 6 of 38)	4919	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
205464	chr7	17295521	17296280	+	0	NA	Intergenic	L2c|LINE|L2	-2752	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
34969	chr11	497701	498380	+	0	NA	exon (NM_203387, exon 9 of 11)	exon (NM_203387, exon 9 of 11)	8728	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
130734	chr2	86783271	86783430	+	0	NA	Intergenic	Intergenic	7563	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
164424	chr3	58897401	58897600	+	0	NA	intron (NR_147234, intron 5 of 10)	L1PA10|LINE|L1	73029	NR_110820	101929238		NR_110820	ENSG00000242428	CFAP20DC-AS1	C3orf67-AS1	CFAP20DC antisense RNA 1	ncRNA
81663	chr16	10988451	10988980	+	0	NA	intron (NM_001243403, intron 9 of 20)	intron (NM_001243403, intron 9 of 20)	44151	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
185881	chr5	132674901	132676330	+	0	NA	intron (NM_000589, intron 2 of 3)	AluJb|SINE|Alu	1626	NM_000589	3565		NM_000589	ENSG00000113520	IL4	BCGF-1|BCGF1|BSF-1|BSF1|IL-4	interleukin 4	protein-coding
109668	chr19	1020461	1022550	+	0	NA	promoter-TSS (NR_004394).7	promoter-TSS (NR_004394).7	-17	NR_004394	26827		NR_004394	ENSG00000206625	RNU6-1	RNU6|RNU6A|U6|U6-1	RNA, U6 small nuclear 1	snRNA
62000	chr13	80489701	80490130	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-148789	NM_005842	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
145635	chr20	44861871	44862230	+	0	NA	Intergenic	Intergenic	-23655	NM_139323	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
29533	chr10	70887471	70888900	+	0	NA	promoter-TSS (NM_001289797)	promoter-TSS (NM_001289797)	-304	NM_001289797	5092		NM_000281	ENSG00000166228	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase 1	protein-coding
215242	chr7	156921151	156921450	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-28092	NR_146959	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
170984	chr3	194631671	194632050	+	0	NA	intron (NM_138399, intron 1 of 10)	intron (NM_138399, intron 1 of 10)	1559	NM_001166306	93109		NM_138399	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
17709	chr1	158778371	158778730	+	0	NA	promoter-TSS (NM_001005278)	promoter-TSS (NM_001005278)	-915	NM_001005278	81442		NM_001005278	ENSG00000188340	OR6N2	OR1-23	olfactory receptor family 6 subfamily N member 2	protein-coding
73029	chr15	40788371	40788530	+	0	NA	intron (NM_018163, intron 1 of 10)	AluY|SINE|Alu	18470	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
166726	chr3	121654421	121655600	+	0	NA	intron (NM_005335, intron 3 of 13)	MIR1_Amn|SINE|MIR	5893	NM_005335	3059		NM_005335	ENSG00000180353	HCLS1	CTTNL|HS1|lckBP1|p75	hematopoietic cell-specific Lyn substrate 1	protein-coding
93941	chr17	21317771	21318200	+	0	NA	Intergenic	Intergenic	29949	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
183121	chr5	74766511	74767850	+	0	NA	promoter-TSS (NM_001364506)	promoter-TSS (NM_001364506)	-63	NM_032380	84340		NM_032380	ENSG00000164347	GFM2	EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2	GTP dependent ribosome recycling factor mitochondrial 2	protein-coding
237468	chrX	119778801	119779000	+	0	NA	Intergenic	Intergenic	8584	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
66406	chr14	61507801	61508650	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	61969	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
13727	chr1	116803251	116803850	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	49120	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
67203	chr14	68927051	68927150	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	52202	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
77007	chr15	78455201	78455400	+	0	NA	intron (NM_001320942, intron 2 of 21)	intron (NM_001320942, intron 2 of 21)	16879	NM_001320942	3658		NM_004136	ENSG00000136381	IREB2	ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA	iron responsive element binding protein 2	protein-coding
12143	chr1	100092601	100093000	+	0	NA	intron (NM_194292, intron 14 of 16)	AluSc8|SINE|Alu	40130	NM_194292	163786		NM_194292	ENSG00000156876	SASS6	MCPH14|SAS-6|SAS6	SAS-6 centriolar assembly protein	protein-coding
153823	chr22	29818351	29818450	+	0	NA	intron (NM_001369944, intron 2 of 16)	intron (NM_001369944, intron 2 of 16)	19874	NM_001369933	84164		NM_032204	ENSG00000100325	ASCC2	ASC1p100|p100	activating signal cointegrator 1 complex subunit 2	protein-coding
184294	chr5	96816301	96817700	+	0	NA	Intergenic	Intergenic	-2855	NM_001198541	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
220936	chr8	108445121	108445650	+	0	NA	intron (NM_014673, intron 1 of 10)	L2c|LINE|L2	1761	NM_014673	9694		NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
42538	chr11	71589201	71589450	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-6450	NM_001005405	440051		NM_001005405	ENSG00000204571	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
99105	chr17	49190601	49191200	+	0	NA	Intergenic	Intergenic	18481	NM_031498	2793		NM_031498	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG9|GNGT8|HG3I	G protein subunit gamma transducin 2	protein-coding
140668	chr2	234024071	234024230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-26552	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
123587	chr19	54466071	54467200	+	0	NA	intron (NM_145057, intron 2 of 2).4	MER2|DNA|TcMar-Tigger	-2857	NM_001301782	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
138387	chr2	204109901	204110700	+	0	NA	Intergenic	Intergenic	173537	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
208389	chr7	66683601	66683980	+	0	NA	intron (NM_001367745, intron 1 of 7)	AluJr|SINE|Alu	1624	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
206891	chr7	37691001	37691200	+	0	NA	intron (NM_001381946, intron 2 of 2)	L1MEj|LINE|L1	7334	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
154976	chr22	37286371	37287030	+	0	NA	intron (NM_013385, intron 1 of 12)	intron (NM_013385, intron 1 of 12)	4192	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
172150	chr4	1205921	1207550	+	0	NA	intron (NR_024569, intron 1 of 3)	intron (NR_024569, intron 1 of 3)	2227	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
25657	chr10	8336351	8337250	+	0	NA	Intergenic	Intergenic	-68495	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
98631	chr17	47806651	47807000	+	0	NA	TTS (NM_145798)	TTS (NM_145798)	14969	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
107765	chr18	50876321	50876780	+	0	NA	Intergenic	MER21C|LTR|ERVL	-2568	NM_002396	4200		NM_002396	ENSG00000082212	ME2	ODS1	malic enzyme 2	protein-coding
110785	chr19	2433971	2434830	+	0	NA	TTS (NR_106958)	TTS (NR_106958)	600	NR_106958	102466806		NR_106958	ENSG00000283728	MIR7108	hsa-mir-7108	microRNA 7108	ncRNA
99498	chr17	50194771	50195000	+	0	NA	intron (NM_000088, intron 20 of 50)	intron (NM_000088, intron 20 of 50)	6746	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
28924	chr10	63179171	63179730	+	0	NA	intron (NM_001322258, intron 21 of 24)	L1PB4|LINE|L1	46122	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
102	chr1	477851	478800	+	0	NA	Intergenic	Intergenic	17120	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
213550	chr7	139104251	139105550	+	0	NA	intron (NM_020119, intron 1 of 12)	AluSz6|SINE|Alu	4820	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
103051	chr17	77162221	77162300	+	0	NA	intron (NM_001039573, intron 3 of 17)	LSU-rRNA_Hsa|rRNA|rRNA	21291	NM_001143998	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
158108	chr22	50018451	50019350	+	0	NA	intron (NM_001350317, intron 13 of 13)	L1MEd|LINE|L1	-6135	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
238030	chrX	135114551	135114800	+	0	NA	Intergenic	Intergenic	5851	NM_001355519	100129515		NM_001355519	ENSG00000224107	ETDB	ETDA|LINC00633	embryonic testis differentiation homolog B	protein-coding
181463	chr5	41903851	41905080	+	0	NA	exon (NM_175921, exon 1 of 6)	exon (NM_175921, exon 1 of 6)	121	NM_175921	285636		NM_175921	ENSG00000205765	RIMOC1	C5orf51	RAB7A interacting MON1-CCZ1 complex subunit 1	protein-coding
42769	chr11	72745201	72745400	+	0	NA	intron (NM_001040118, intron 1 of 34)	AluY|SINE|Alu	7089	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
173798	chr4	17641801	17642200	+	0	NA	intron (NM_015688, intron 13 of 17)	intron (NM_015688, intron 13 of 17)	27359	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
93778	chr17	20262351	20263050	+	0	NA	intron (NM_001033555, intron 10 of 12)	intron (NM_001033555, intron 10 of 12)	-58474	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
16501	chr1	154866851	154867450	+	0	NA	intron (NM_001204087, intron 1 of 8)	intron (NM_001204087, intron 1 of 8)	920	NM_001365837	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
155183	chr22	37774871	37775030	+	0	NA	3' UTR (NM_007032, exon 14 of 14)	3' UTR (NM_007032, exon 14 of 14)	28716	NM_138632	11078		NM_007032	ENSG00000100106	TRIOBP	DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
146036	chr20	47320851	47320950	+	0	NA	TTS (NR_024594)	TTS (NR_024594)	2398	NR_024594	100131496		NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
131317	chr2	96124301	96125900	+	0	NA	intron (NM_001002036, intron 8 of 8)	intron (NM_001002036, intron 8 of 8)	-8529	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
201319	chr6	144379471	144379830	+	0	NA	intron (NM_007124, intron 1 of 73)	MLT1F1|LTR|ERVL-MaLR	-26005	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
131084	chr2	88903871	88904030	+	0	NA	Intergenic	Intergenic	91580	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
121967	chr19	48484701	48484900	+	0	NA	TTS (NM_001080434)	TTS (NM_001080434)	15431	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
203732	chr7	1140371	1140850	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-2353	NM_001134395	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
205008	chr7	6478121	6478380	+	0	NA	intron (NM_006854, intron 1 of 4)	AluJr|SINE|Alu	5902	NM_001100603	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
140696	chr2	234290191	234291440	+	0	NA	Intergenic	Intergenic	163780	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
107839	chr18	54263671	54264730	+	0	NA	Intergenic	Intergenic	-5279	NR_147257	11201		NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
115927	chr19	16621151	16622150	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	6554	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
237837	chrX	130085951	130086050	+	0	NA	intron (NM_001127197, intron 1 of 8)	MamSINE1|SINE|tRNA-RTE	24497	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
68824	chr14	91270371	91270530	+	0	NA	TTS (NM_001080414)	TTS (NM_001080414)	-16570	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
134604	chr2	144371071	144371230	+	0	NA	Intergenic	Intergenic	-38081	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
208083	chr7	56095621	56096180	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2904	NR_047689	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
214060	chr7	143388471	143389100	+	0	NA	exon (NM_001010972, exon 8 of 10)	exon (NM_001010972, exon 8 of 10)	6099	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
104561	chr17	81342751	81343750	+	0	NA	Intergenic	CpG	-12576	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
54101	chr12	76092451	76092550	+	0	NA	Intergenic	MER66A|LTR|ERV1	-7815	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
73197	chr15	41512951	41513400	+	0	NA	intron (NM_206961, intron 1 of 18)	CpG-8132	652	NM_002344	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
59164	chr13	21610871	21611030	+	0	NA	Intergenic	Intergenic	-6780	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
141593	chr2	241627801	241628400	+	0	NA	intron (NM_015963, intron 2 of 5)	intron (NM_015963, intron 2 of 5)	9058	NM_015963	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
204252	chr7	2577651	2577950	+	0	NA	intron (NM_152558, intron 6 of 21)	(GTGC)n|Simple_repeat|Simple_repeat	18821	NM_001287500	23288		NM_152558	ENSG00000106012	IQCE	1700028P05Rik|PAPA7	IQ motif containing E	protein-coding
58238	chr12	128737321	128737780	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	86408	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
196144	chr6	42438871	42439480	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	12876	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
112789	chr19	7480071	7480550	+	0	NA	intron (NM_080662, intron 3 of 4)	intron (NM_080662, intron 3 of 4)	8725	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
201013	chr6	141326451	141327330	+	0	NA	Intergenic	Intergenic	643076	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
22279	chr1	212743901	212744100	+	0	NA	intron (NM_015471, intron 4 of 5)	L1M4|LINE|L1	-44160	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
123806	chr19	55163671	55164730	+	0	NA	intron (NM_178837, intron 4 of 11)	AluSx|SINE|Alu	2413	NM_001256715	352909		NM_178837	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	dynein axonemal assembly factor 3	protein-coding
125145	chr2	10006471	10006950	+	0	NA	Intergenic	LTR12D|LTR|ERV1	36691	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
90529	chr17	1480471	1481030	+	0	NA	exon (NM_001080950, exon 6 of 32)	exon (NM_001080950, exon 6 of 32)	4651	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
134954	chr2	151825801	151826080	+	0	NA	intron (NM_177985, intron 1 of 5)	AluSc|SINE|Alu	2481	NM_012097	26225		NM_012097	ENSG00000162980	ARL5A	ARFLP5|ARL5	ADP ribosylation factor like GTPase 5A	protein-coding
162256	chr3	47288051	47288680	+	0	NA	intron (NM_025010, intron 1 of 9)	MIR3|SINE|MIR	5421	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
138014	chr2	201271721	201271980	+	0	NA	intron (NM_001228, intron 5 of 9)	intron (NM_001228, intron 5 of 9)	11314	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
210111	chr7	98011451	98011580	+	0	NA	Intergenic	MER84|LTR|ERV1	-21411	NM_006188	4951		NM_006188	ENSG00000135175	OCM2	OCM|OM	oncomodulin 2	protein-coding
157642	chr22	46116201	46117330	+	0	NA	Intergenic	Intergenic	3079	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
197754	chr6	87196121	87196700	+	0	NA	intron (NM_015021, intron 1 of 7)	Tigger6a|DNA|TcMar-Tigger	40845	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
28677	chr10	60703421	60703880	+	0	NA	intron (NM_001204403, intron 1 of 43)	intron (NM_001204403, intron 1 of 43)	29878	NM_001204403	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
58989	chr13	19986021	19986280	+	0	NA	intron (NM_001353162, intron 4 of 26)	AluJo|SINE|Alu	27126	NM_001353161	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
211509	chr7	105289251	105289350	+	0	NA	intron (NM_001350742, intron 2 of 16)	AluY|SINE|Alu	9479	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
109940	chr19	1327021	1327480	+	0	NA	Intergenic	Intergenic	-27709	NM_001369789	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
6728	chr1	30283221	30283480	+	0	NA	Intergenic	L1MCa|LINE|L1	-245738	NR_110790	101929406		NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
54808	chr12	94643151	94643530	+	0	NA	intron (NM_020698, intron 1 of 3)	intron (NM_020698, intron 1 of 3)	7217	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
173766	chr4	16943171	16943330	+	0	NA	Intergenic	L1HS|LINE|L1	-44441	NM_001304435	9079		NM_001290	ENSG00000169744	LDB2	CLIM1|LDB-2|LDB1	LIM domain binding 2	protein-coding
78095	chr15	90250401	90250600	+	0	NA	intron (NR_104604, intron 1 of 9)	intron (NR_104604, intron 1 of 9)	968	NR_104604								
109696	chr19	1052221	1053080	+	0	NA	intron (NM_019112, intron 23 of 46)	GA-rich|Low_complexity|Low_complexity	12543	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
28368	chr10	47255271	47255630	+	0	NA	Intergenic	Intergenic	-44747	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
226040	chr9	43068121	43068380	+	0	NA	Intergenic	Intergenic	-57916	NR_160669	102724904		NR_160669	ENSG00000291167	LOC102724904	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
150941	chr21	44290551	44290850	+	0	NA	intron (NM_000383, intron 7 of 13)	L2c|LINE|L2	4824	NM_000383	326		NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
209190	chr7	75413171	75413330	+	0	NA	intron (NR_104013, intron 4 of 7)	LTR5B|LTR|ERVK	2928	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
66355	chr14	61459001	61460130	+	0	NA	intron (NM_006255, intron 9 of 13)	L2|LINE|L2	110629	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
238217	chrX	139924221	139924550	+	0	NA	promoter-TSS (NR_030230)	promoter-TSS (NR_030230)	-154	NR_030230	574508		NR_030230	ENSG00000207633	MIR505	MIRN505|hsa-mir-505|mir-505	microRNA 505	ncRNA
197903	chr6	89359321	89359780	+	0	NA	Intergenic	Intergenic	-6828	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
83553	chr16	28086171	28086550	+	0	NA	Intergenic	Intergenic	-22646	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
108219	chr18	63171971	63172130	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	147719	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
96785	chr17	41800471	41800930	+	0	NA	Intergenic	Intergenic	11249	NM_006455	10609		NM_006455	ENSG00000141696	P3H4	LEPREL4|NO55|NOL55|SC65	prolyl 3-hydroxylase family member 4 (inactive)	protein-coding
134703	chr2	144499751	144500050	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-19714	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
225995	chr9	41280551	41280850	+	0	NA	Intergenic	Intergenic	-46865	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
61587	chr13	72780501	72780830	+	0	NA	intron (NM_001322348, intron 1 of 19)	MIR3|SINE|MIR	1235	NM_001322349	22894		NM_014953	ENSG00000083520	DIS3	2810028N01Rik|EXOSC11|KIAA1008|RRP44|dis3p	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding
55820	chr12	108841051	108841350	+	0	NA	intron (NM_001161330, intron 2 of 13)	intron (NM_001161330, intron 2 of 13)	-4194	NR_030350	693204		NR_030350	ENSG00000207622	MIR619	MIRN619|hsa-mir-619	microRNA 619	ncRNA
112617	chr19	6753171	6754380	+	0	NA	intron (NM_005490, intron 8 of 9)	intron (NM_005490, intron 8 of 9)	13660	NM_005490	10045		NM_005490	ENSG00000125731	SH2D3A	NSP1	SH2 domain containing 3A	protein-coding
152697	chr22	21629801	21630650	+	0	NA	promoter-TSS (NM_001017964)	promoter-TSS (NM_001017964)	-203	NR_163923	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
231287	chr9	130032201	130032600	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluJo|SINE|Alu	10789	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
101289	chr17	66404101	66405180	+	0	NA	intron (NR_110822, intron 3 of 3)	intron (NR_110822, intron 3 of 3)	12214	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
78060	chr15	90104001	90104200	+	0	NA	intron (NR_149130, intron 2 of 2)	intron (NR_149130, intron 2 of 2)	-1632	NM_002168	3418		NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDH-2|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2	protein-coding
84416	chr16	30359701	30360180	+	0	NA	intron (NM_015527, intron 4 of 8)	intron (NM_015527, intron 4 of 8)	-4632	NM_006110	10421		NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
178859	chr4	154416721	154417150	+	0	NA	intron (NM_001142552, intron 1 of 7).2	CpG	74864	NM_001142552	54798		NM_017639	ENSG00000197410	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
47459	chr12	3838721	3839230	+	0	NA	intron (NM_001286521, intron 1 of 6)	CpG	34424	NM_001286522	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
38433	chr11	45144821	45145380	+	0	NA	intron (NM_001359633, intron 2 of 7)	MIRb|SINE|MIR	-1539	NM_001384648	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
197653	chr6	85368721	85368980	+	0	NA	Intergenic	Intergenic	21336	NR_134634	101928820		NR_134633	ENSG00000234155	LINC02535	-	long intergenic non-protein coding RNA 2535	ncRNA
13915	chr1	120063971	120064330	+	0	NA	intron (NM_001200001, intron 1 of 21)	L3|LINE|CR1	5512	NM_024408	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
72172	chr15	29132951	29133050	+	0	NA	intron (NM_015307, intron 7 of 10)	intron (NM_015307, intron 7 of 10)	62342	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
86732	chr16	67603451	67603750	+	0	NA	intron (NM_001191022, intron 2 of 9)	AluY|SINE|Alu	32827	NM_001363916	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
237496	chrX	119948471	119948630	+	0	NA	Intergenic	Intergenic	-4799	NM_024528	79576		NM_024528	ENSG00000101882	NKAP	MRXSHD	NFKB activating protein	protein-coding
140940	chr2	237739121	237739780	+	0	NA	intron (NM_001137550, intron 11 of 23)	intron (NM_001137550, intron 11 of 23)	47245	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
71576	chr14	106459951	106460250	+	0	NA	Intergenic	Intergenic	-22339	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
85001	chr16	31484871	31485230	+	0	NA	intron (NR_130783, intron 3 of 11)	intron (NR_130783, intron 3 of 11)	1927	NR_130783	6524		NM_003041	ENSG00000140675	SLC5A2	SGLT2	solute carrier family 5 member 2	protein-coding
81009	chr16	4181771	4182330	+	0	NA	Intergenic	AluJo|SINE|Alu	60030	NM_001098814	6345		NM_001098814	ENSG00000185739	SRL	SAR	sarcalumenin	protein-coding
41877	chr11	67242701	67242900	+	0	NA	intron (NM_001256405, intron 1 of 9)	intron (NM_001256405, intron 1 of 9)	2786	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
74541	chr15	60511301	60512130	+	0	NA	intron (NM_134260, intron 5 of 11)	intron (NM_134260, intron 5 of 11)	32537	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
190717	chr6	287451	288000	+	0	NA	Intergenic	Intergenic	-4332	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
227107	chr9	85802201	85802630	+	0	NA	Intergenic	L2c|LINE|L2	-3587	NR_029410	389765		NR_029410		LOC389765	-	kinesin family member 27 pseudogene	pseudo
50024	chr12	43445141	43445250	+	0	NA	intron (NM_025003, intron 15 of 38)	intron (NM_025003, intron 15 of 38)	107008	NM_025003	80070		NM_025003	ENSG00000173157	ADAMTS20	ADAM-TS20|ADAMTS-20|GON-1	ADAM metallopeptidase with thrombospondin type 1 motif 20	protein-coding
6301	chr1	27622851	27623980	+	0	NA	intron (NM_001042747, intron 3 of 12)	intron (NM_001042747, intron 3 of 12)	2825	NM_001042747	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
80464	chr16	2692101	2692300	+	0	NA	intron (NM_018992, intron 1 of 5)	MER52C|LTR|ERV1	9677	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
200966	chr6	139251601	139251800	+	0	NA	intron (NM_153235, intron 7 of 9)	intron (NM_153235, intron 7 of 9)	40298	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
217986	chr8	38376371	38376900	+	0	NA	intron (NM_017778, intron 1 of 9)	AluSq2|SINE|Alu	5636	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
122902	chr19	50564871	50565230	+	0	NA	intron (NM_001080457, intron 1 of 2)	intron (NM_001080457, intron 1 of 2)	3385	NM_001080457	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
108901	chr18	79426071	79427000	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	26236	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
34662	chr10	133346021	133346280	+	0	NA	Intergenic	AluSz|SINE|Alu	-1223	NM_001145201	118471		NM_145202	ENSG00000165828	PRAP1	PRO1195|UPA	proline rich acidic protein 1	protein-coding
33812	chr10	123241121	123242150	+	0	NA	Intergenic	Intergenic	87233	NM_004725	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
212778	chr7	130055721	130057050	+	0	NA	Intergenic	L2|LINE|L2	-4934	NM_001282191	51530		NM_016478	ENSG00000091732	ZC3HC1	HSPC216|NIPA	zinc finger C3HC-type containing 1	protein-coding
113361	chr19	8705421	8705930	+	0	NA	Intergenic	LTR47B2|LTR|ERVL	-6880	NM_178525	284382		NM_178525	ENSG00000181786	ACTL9	HSD21|SPGF53	actin like 9	protein-coding
233630	chrX	568451	568550	+	0	NA	Intergenic	Intergenic	-55844	NM_006883	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
40492	chr11	64257471	64257630	+	0	NA	intron (NM_001316314, intron 10 of 31)	AluJb|SINE|Alu	6020	NM_001184883	5331		NM_000932	ENSG00000149782	PLCB3	SMDCD	phospholipase C beta 3	protein-coding
170932	chr3	194307251	194307730	+	0	NA	intron (NR_024480, intron 1 of 2)	MER5A|DNA|hAT-Charlie	5314	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
14221	chr1	143211901	143212100	+	0	NA	Intergenic	Intergenic	210592	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
35524	chr11	1562771	1563600	+	0	NA	intron (NM_004420, intron 3 of 6)	intron (NM_004420, intron 3 of 6)	9086	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
133136	chr2	112668051	112669130	+	0	NA	Intergenic	Intergenic	22651	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
72324	chr15	31262101	31262400	+	0	NA	Intergenic	Intergenic	-31388	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
127735	chr2	43566751	43567080	+	0	NA	intron (NR_144316, intron 14 of 36)	intron (NR_144316, intron 14 of 36)	29059	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
108651	chr18	76658451	76658830	+	0	NA	Intergenic	Intergenic	-19629	NR_110784	101927651		NR_110784		LINC01927	-	long intergenic non-protein coding RNA 1927	ncRNA
122652	chr19	49855471	49855630	+	0	NA	TTS (NR_039904)	TTS (NR_039904)	959	NR_039904	100616313		NR_039904	ENSG00000265954	MIR4749	mir-4749	microRNA 4749	ncRNA
25619	chr10	8075501	8075830	+	0	NA	TTS (NM_002051)	TTS (NM_002051)	20977	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
21611	chr1	206566051	206566800	+	0	NA	intron (NM_182665, intron 1 of 4)	L3b|LINE|CR1	9261	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
186429	chr5	135930121	135930700	+	0	NA	non-coding (NR_152420, exon 1 of 6)	non-coding (NR_152420, exon 1 of 6)	113	NR_152421	26223		NM_012159		FBXL21P	FBL3B|FBXL21|FBXL3B|FBXL3P|Fbl21	F-box and leucine rich repeat protein 21, pseudogene	pseudo
160780	chr3	32940301	32940800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11094	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
54924	chr12	96192871	96193030	+	0	NA	Intergenic	L2c|LINE|L2	-1425	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
15694	chr1	150982001	150982600	+	0	NA	promoter-TSS (NM_003568)	promoter-TSS (NM_003568)	8	NM_003568	8416		NM_003568	ENSG00000143412	ANXA9	ANX31	annexin A9	protein-coding
222009	chr8	130032871	130033500	+	0	NA	Intergenic	AluSp|SINE|Alu	-16056	NM_001353269	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
162103	chr3	46905121	46906050	+	0	NA	Intergenic	Intergenic	23336	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
83655	chr16	28316901	28317800	+	0	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	24825	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
156848	chr22	41976451	41977780	+	0	NA	intron (NM_145733, intron 1 of 10)	CpG	188	NM_019106	55964		NM_019106	ENSG00000100167	SEPTIN3	SEP3|SEPT3|bK250D10.3	septin 3	protein-coding
44579	chr11	108242601	108243380	+	0	NA	intron (NM_000051, intron 5 of 62)	AluJb|SINE|Alu	19461	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
215875	chr8	7678901	7679430	+	0	NA	Intergenic	Intergenic	-90419	NR_046351								
62599	chr13	100231001	100231200	+	0	NA	intron (NM_001352611, intron 7 of 21)	intron (NM_001352611, intron 7 of 21)	142007	NR_148027	5095		NM_000282	ENSG00000175198	PCCA	-	propionyl-CoA carboxylase subunit alpha	protein-coding
45546	chr11	118770671	118771830	+	0	NA	intron (NM_004397, intron 4 of 13)	intron (NM_004397, intron 4 of 13)	19698	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
75847	chr15	69498101	69498500	+	0	NA	Intergenic	Intergenic	45482	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
215340	chr7	157366871	157367230	+	0	NA	intron (NM_001363676, intron 4 of 6)	intron (NM_001363676, intron 4 of 6)	30046	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
48118	chr12	7875751	7876050	+	0	NA	intron (NM_001286237, intron 1 of 9)	AluSx|SINE|Alu	-2985	NM_001286234	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
177631	chr4	121191071	121191700	+	0	NA	intron (NM_001128843, intron 2 of 12)	intron (NM_001128843, intron 2 of 12)	25242	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
129638	chr2	70140171	70140330	+	0	NA	Intergenic	AluY|SINE|Alu	-14934	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
190560	chr5	180805471	180805630	+	0	NA	intron (NR_157150, intron 1 of 1)	AluSg|SINE|Alu	-1648	NM_001114620	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
174880	chr4	48767071	48767330	+	0	NA	intron (NM_015030, intron 1 of 63)	MSTA|LTR|ERVL-MaLR	13079	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
201278	chr6	144284721	144285800	+	0	NA	Intergenic	CpG	-6477	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
10146	chr1	59976801	59977030	+	0	NA	Intergenic	Intergenic	-50117	NR_134981	1573		NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding
231751	chr9	132162201	132163850	+	0	NA	intron (NM_032536, intron 1 of 7)	CpG	967	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
209327	chr7	76169901	76170100	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-31896	NM_001291831	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
139329	chr2	219556321	219556580	+	0	NA	intron (NM_015311, intron 13 of 20)	intron (NM_015311, intron 13 of 20)	-7303	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
88447	chr16	84930121	84930850	+	0	NA	Intergenic	(GTGTGG)n|Simple_repeat|Simple_repeat	81050	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
68908	chr14	91356211	91356950	+	0	NA	intron (NM_001080414, intron 4 of 29)	L1MB8|LINE|L1	61240	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
48811	chr12	12032001	12033000	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-17361	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
209243	chr7	75871801	75872200	+	0	NA	Intergenic	AluSz|SINE|Alu	-6992	NM_001346189	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
64889	chr14	35389471	35389630	+	0	NA	Intergenic	Intergenic	15199	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
166299	chr3	112560921	112563220	+	0	NA	promoter-TSS (NM_001348907)	promoter-TSS (NM_001348907)	25	NM_001348909	55032		NM_017945	ENSG00000138459	SLC35A5	-	solute carrier family 35 member A5	protein-coding
190689	chr6	148301	149000	+	0	NA	promoter-TSS (NR_109817)	promoter-TSS (NR_109817)	-491	NR_109817	107105278		NR_109817		SEPTIN14P6	C6orf88|LINC00266-3|NCRNA00266-3|NCRNA00266C|SEPT14P6|dJ24O22.2	septin 14 pseudogene 6	pseudo
4799	chr1	23579221	23579580	+	0	NA	Intergenic	Intergenic	-19899	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
81565	chr16	9129851	9130550	+	0	NA	Intergenic	MIR|SINE|MIR	38556	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
131032	chr2	88169951	88170780	+	0	NA	promoter-TSS (NM_001244678)	promoter-TSS (NM_001244678)	19	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
203784	chr7	1240171	1240880	+	0	NA	Intergenic	CpG-25321	7653	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
47417	chr12	2959001	2959750	+	0	NA	promoter-TSS (NM_201443)	promoter-TSS (NM_201443)	-22	NM_201441	7004		NM_003213	ENSG00000197905	TEAD4	EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B	TEA domain transcription factor 4	protein-coding
37489	chr11	18398501	18399100	+	0	NA	intron (NR_028500, intron 2 of 6)	AluY|SINE|Alu	2534	NM_001165414	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
220005	chr8	90082671	90082930	+	0	NA	promoter-TSS (NM_004929)	promoter-TSS (NM_004929)	79	NM_001366795	793		NM_004929	ENSG00000104327	CALB1	CALB|D-28K	calbindin 1	protein-coding
28808	chr10	62234071	62234830	+	0	NA	intron (NM_145307, intron 6 of 11)	AluJb|SINE|Alu	34394	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
138155	chr2	202380451	202380550	+	0	NA	intron (NM_001204, intron 1 of 12)	MER5A|DNA|hAT-Charlie	4173	NM_001204	659		NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding
87841	chr16	75652871	75653030	+	0	NA	intron (NR_144545, intron 1 of 2)	L1MB3|LINE|L1	5177	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
146655	chr20	50392071	50392830	+	0	NA	Intergenic	Intergenic	-71108	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
222303	chr8	133483321	133483830	+	0	NA	intron (NM_173344, intron 3 of 9)	MIRc|SINE|MIR	88312	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
192418	chr6	24865071	24865630	+	0	NA	exon (NM_001346032, exon 7 of 22)	exon (NM_001346032, exon 7 of 22)	11920	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
187374	chr5	141853951	141854880	+	0	NA	exon (NM_032420, exon 5 of 5)	exon (NM_032420, exon 5 of 5)	11787	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
29635	chr10	71822171	71822580	+	0	NA	intron (NM_001042466, intron 7 of 13)	intron (NM_001042466, intron 7 of 13)	10492	NM_001171935	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
24989	chr10	3119821	3120330	+	0	NA	intron (NM_001345944, intron 16 of 21)	intron (NM_001345944, intron 16 of 21)	-14029	NR_132758	106633806		NR_132758		SNORD142	SNORA85|SNORD174|ZL68	small nucleolar RNA, C/D box 142	snoRNA
198804	chr6	109011701	109012480	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	-2535	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
54677	chr12	93397971	93398330	+	0	NA	intron (NM_001301023, intron 3 of 4)	AluSg|SINE|Alu	19572	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
72968	chr15	40562921	40563500	+	0	NA	intron (NM_001382442, intron 1 of 3)	AluJb|SINE|Alu	1832	NM_001382436	90416		NM_052849	ENSG00000128891	CCDC32	C15orf57|CFNDS	coiled-coil domain containing 32	protein-coding
81590	chr16	10328421	10328680	+	0	NA	Intergenic	MER41C|LTR|ERV1	-57511	NM_024997	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
133713	chr2	127363721	127364180	+	0	NA	intron (NM_001371911, intron 1 of 16)	AluJr4|SINE|Alu	-20721	NM_006609	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
2066	chr1	7926901	7927450	+	0	NA	intron (NM_001561, intron 7 of 7)	LTR3A|LTR|ERVK	13664	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
119071	chr19	39145421	39145780	+	0	NA	intron (NM_001014834, intron 1 of 7)	intron (NM_001014834, intron 1 of 7)	19814	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
36079	chr11	2991621	2993180	+	0	NA	promoter-TSS (NM_001369378)	promoter-TSS (NM_001369378)	-71	NM_001369375	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
209570	chr7	77393371	77393600	+	0	NA	intron (NR_146937, intron 5 of 31)	L2a|LINE|L2	-21713	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
100148	chr17	58529001	58529480	+	0	NA	non-coding (NR_104196, exon 1 of 11)	non-coding (NR_104196, exon 1 of 11)	227	NM_004574	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
206773	chr7	36716451	36716750	+	0	NA	intron (NM_001177506, intron 1 of 21)	L1PA4|LINE|L1	7894	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
146905	chr20	51542101	51543980	+	0	NA	promoter-TSS (NM_001258296)	promoter-TSS (NM_001258296)	-321	NM_001258296	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
181870	chr5	54308601	54308800	+	0	NA	intron (NM_019087, intron 1 of 4)	intron (NM_019087, intron 1 of 4)	1873	NM_019087	54622		NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
144844	chr20	36885421	36885680	+	0	NA	intron (NM_080628, intron 4 of 6)	L3|LINE|CR1	9412	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
24238	chr1	236161201	236161750	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	18936	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
139023	chr2	218395751	218397500	+	0	NA	3' UTR (NM_000578, exon 15 of 15)	3' UTR (NM_000578, exon 15 of 15)	-1608	NM_001206878	58190		NM_021198	ENSG00000144579	CTDSP1	NIF3|NLI-IF|NLIIF|SCP1	CTD small phosphatase 1	protein-coding
210477	chr7	100155801	100156100	+	0	NA	TTS (NR_039802)	TTS (NR_039802)	719	NR_039802	100616439		NR_039802	ENSG00000284518	MIR4658	-	microRNA 4658	ncRNA
181345	chr5	40433901	40434100	+	0	NA	Intergenic	Intergenic	-245915	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
192685	chr6	26254121	26254380	+	0	NA	Intergenic	AluY|SINE|Alu	2636	NM_003524	8345		NM_003524	ENSG00000275713	H2BC9	H2B/j|H2BFJ|HIST1H2BH	H2B clustered histone 9	protein-coding
28101	chr10	43391671	43392050	+	0	NA	intron (NM_001098204, intron 3 of 3)	intron (NM_001098204, intron 3 of 3)	4971	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
87148	chr16	69190451	69190880	+	0	NA	intron (NM_006750, intron 1 of 6)	intron (NM_006750, intron 1 of 6)	3518	NM_006750	6645		NM_006750	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin beta 2	protein-coding
124531	chr2	238701	238900	+	0	NA	TTS (NR_104224)	TTS (NR_104224)	17540	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
177709	chr4	122117721	122118580	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-34181	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
239344	chrY	19395671	19395830	+	0	NA	Intergenic	L1PB1|LINE|L1	107403	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
1873	chr1	6424671	6425630	+	0	NA	exon (NM_001367473, exon 1 of 14)	exon (NM_001367473, exon 1 of 14)	374	NM_001367474	83715		NM_031475	ENSG00000187017	ESPN	DFNB36|LP2654|USH1M	espin	protein-coding
124816	chr2	7609801	7610400	+	0	NA	Intergenic	Intergenic	188839	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
108378	chr18	69400521	69401380	+	0	NA	promoter-TSS (NM_152721)	promoter-TSS (NM_152721)	62	NM_152721	220164		NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding
231939	chr9	133124271	133125050	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	-3420	NM_006266	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
223762	chr8	144524421	144525050	+	0	NA	TTS (NM_001001795)	TTS (NM_001001795)	2298	NM_001024678	441381		NM_001024678	ENSG00000254402	LRRC24	LRRC14OS	leucine rich repeat containing 24	protein-coding
57933	chr12	123617771	123617930	+	0	NA	exon (NM_020936, exon 11 of 14)	exon (NM_020936, exon 11 of 14)	1140	NR_145743	109616977		NR_145743	ENSG00000206897	SNORA9B	-	small nucleolar RNA, H/ACA box 9B	snoRNA
101937	chr17	74481401	74481600	+	0	NA	intron (NM_001330457, intron 4 of 4)	intron (NM_001330457, intron 4 of 4)	14866	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
41608	chr11	66408451	66409730	+	0	NA	Intergenic	CpG	-11914	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
167307	chr3	128685751	128686050	+	0	NA	Intergenic	AluSg7|SINE|Alu	-35082	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
226518	chr9	71886101	71887030	+	0	NA	intron (NM_016014, intron 1 of 4)	AluSc8|SINE|Alu	24628	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
200998	chr6	139580571	139580930	+	0	NA	Intergenic	Intergenic	-106154	NR_033919	645434		NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA
203683	chr7	1021671	1022030	+	0	NA	intron (NM_001350969, intron 1 of 4)	intron (NM_001350969, intron 1 of 4)	1176	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
204350	chr7	2886721	2887530	+	0	NA	Intergenic	Intergenic	-42817	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
127869	chr2	45778171	45778880	+	0	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	126850	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
39327	chr11	59146001	59146200	+	0	NA	intron (NM_001374848, intron 4 of 5)	AluSx1|SINE|Alu	1238	NM_001369457	63901		NM_022074	ENSG00000166801	FAM111A	GCLEB|KCS2	FAM111 trypsin like peptidase A	protein-coding
95998	chr17	39205921	39206300	+	0	NA	Intergenic	Intergenic	5787	NM_001330200	6143		NM_000981	ENSG00000108298	RPL19	L19|eL19	ribosomal protein L19	protein-coding
20089	chr1	186404501	186404930	+	0	NA	intron (NM_001164245, intron 10 of 12)	intron (NM_001164245, intron 10 of 12)	28877	NM_017847	54953		NM_017847	ENSG00000157181	ODR4	C1orf27|TTG1|odr-4	odr-4 GPCR localization factor homolog	protein-coding
13439	chr1	114345971	114347350	+	0	NA	Intergenic	Intergenic	164543	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
130850	chr2	87315351	87315750	+	0	NA	Intergenic	Intergenic	120764	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
199976	chr6	127980171	127980550	+	0	NA	intron (NM_001291981, intron 28 of 32).2	AluSx3|SINE|Alu	-47505	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
149148	chr21	17794701	17796730	+	0	NA	intron (NM_017447, intron 3 of 4)	AluJo|SINE|Alu	-3206	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
54368	chr12	89737101	89737300	+	0	NA	Intergenic	L1MA3|LINE|L1	-27834	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
206674	chr7	36386101	36386600	+	0	NA	intron (NM_001100425, intron 1 of 6)	L1ME3C|LINE|L1	-3512	NM_001284301	54443		NM_018685	ENSG00000011426	ANLN	FSGS8|Scraps|scra	anillin, actin binding protein	protein-coding
89686	chr16	89385551	89386030	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-45128	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
145056	chr20	38434701	38436130	+	0	NA	promoter-TSS (NR_027241)	promoter-TSS (NR_027241)	-38	NR_152754	388796		NR_015366	ENSG00000196756	SNHG17	-	small nucleolar RNA host gene 17	ncRNA
133614	chr2	126655401	126656700	+	0	NA	promoter-TSS (NM_002101)	promoter-TSS (NM_002101)	-108	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
66534	chr14	61763901	61764500	+	0	NA	intron (NM_003082, intron 1 of 9)	L2c|LINE|L2	1780	NM_003082	6617		NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
96870	chr17	42067071	42068180	+	0	NA	intron (NM_001378270, intron 1 of 8)	intron (NM_001378270, intron 1 of 8)	-17024	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
141173	chr2	239277771	239278350	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-27402	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
97344	chr17	43282521	43282850	+	0	NA	Intergenic	FRAM|SINE|Alu	1644	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
199588	chr6	119110371	119111030	+	0	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	-32036	NM_024581	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
83722	chr16	28534501	28535200	+	0	NA	3' UTR (NM_001042483, exon 3 of 3)	3' UTR (NM_001042483, exon 3 of 3)	4124	NM_012385	26471		NM_012385	ENSG00000176046	NUPR1	COM1|P8	nuclear protein 1, transcriptional regulator	protein-coding
167801	chr3	133498971	133499480	+	0	NA	Intergenic	L2a|LINE|L2	-8079	NR_135276	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
143193	chr20	24917951	24918630	+	0	NA	Intergenic	Intergenic	-30979	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
169768	chr3	172595821	172596430	+	0	NA	promoter-TSS (NR_146714)	promoter-TSS (NR_146714)	-518	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
23508	chr1	228790351	228790650	+	0	NA	Intergenic	Intergenic	55021	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
185155	chr5	119328201	119328400	+	0	NA	intron (NM_001286815, intron 2 of 2)	AluYk11|SINE|Alu	-4875	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
22717	chr1	224175671	224176030	+	0	NA	Intergenic	Intergenic	-7390	NM_001321541	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
32606	chr10	103590951	103591250	+	0	NA	3' UTR (NM_004210, exon 6 of 6)	3' UTR (NM_004210, exon 6 of 6)	-73658	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
172509	chr4	2260801	2263050	+	0	NA	exon (NM_006454, exon 1 of 6)	exon (NM_006454, exon 1 of 6)	184	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
206120	chr7	27245271	27245430	+	0	NA	intron (NM_001989, intron 2 of 2)	CpG-25681	1879	NR_120507	101410536		NR_120507	ENSG00000253405	EVX1-AS	EVX1-AS1|EVX1AS	EVX1 antisense RNA	ncRNA
213109	chr7	131230121	131230380	+	0	NA	intron (NM_001145354, intron 2 of 18)	MER4D|LTR|ERV1	97529	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
120539	chr19	44908571	44908930	+	0	NA	exon (NM_001302691, exon 4 of 4)	exon (NM_001302691, exon 4 of 4)	2349	NM_001302690	348		NM_000041	ENSG00000130203	APOE	AD2|APO-E|ApoE4|LDLCQ5|LPG	apolipoprotein E	protein-coding
39129	chr11	48190901	48191680	+	0	NA	Intergenic	L1PA3|LINE|L1	-25520	NM_001005470	119765		NM_001005470	ENSG00000175619	OR4B1	OR11-106|OST208	olfactory receptor family 4 subfamily B member 1	protein-coding
106626	chr18	22389721	22389980	+	0	NA	Intergenic	L1PA10|LINE|L1	28065	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
99416	chr17	50084421	50085630	+	0	NA	intron (NM_002204, intron 23 of 25)	AluSx1|SINE|Alu	-9712	NM_001199898	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
62825	chr13	109767001	109768300	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	18933	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
95064	chr17	32759521	32759780	+	0	NA	TTS (NM_001303280)	TTS (NM_001303280)	117474	NM_015194	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
161030	chr3	37992501	37992730	+	0	NA	intron (NM_001385038, intron 2 of 20)	L2a|LINE|L2	-1523	NM_001370264	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
155963	chr22	39832621	39832880	+	0	NA	intron (NM_152512, intron 4 of 6)	L1MEh|LINE|L1	61010	NM_152512	150350		NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
104423	chr17	81068221	81068880	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	10816	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
183890	chr5	87340221	87341080	+	0	NA	intron (NM_022650, intron 5 of 24)	intron (NM_022650, intron 5 of 24)	-17022	NR_130929	644285		NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
146532	chr20	49947201	49947400	+	0	NA	intron (NM_018683, intron 4 of 5)	intron (NM_018683, intron 4 of 5)	10903	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
105025	chr17	82049301	82049880	+	0	NA	intron (NM_002917, intron 6 of 7)	intron (NM_002917, intron 6 of 7)	2221	NM_002917	5986		NM_002917	ENSG00000169733	RFNG	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
151721	chr22	17742321	17742980	+	0	NA	intron (NM_001244570, intron 1 of 3)	intron (NM_001244570, intron 1 of 3)	21609	NR_036168	100423025		NR_036168	ENSG00000264757	MIR3198-1	MIR3198|mir-3198-1	microRNA 3198-1	ncRNA
31404	chr10	95430371	95430800	+	0	NA	intron (NM_001377203, intron 6 of 27)	intron (NM_001377203, intron 6 of 27)	10595	NM_001034954	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
50394	chr12	47278001	47278280	+	0	NA	Intergenic	Intergenic	29259	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
113438	chr19	9815901	9816100	+	0	NA	intron (NM_001316942, intron 2 of 3)	THE1A-int|LTR|ERVL-MaLR	3079	NM_001316938	54850		NM_017703	ENSG00000127452	FBXL12	Fbl12	F-box and leucine rich repeat protein 12	protein-coding
198037	chr6	90173501	90173900	+	0	NA	intron (NM_021813, intron 4 of 8)	L1ME1|LINE|L1	123143	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
132356	chr2	105749601	105750380	+	0	NA	intron (NM_001004722, intron 1 of 3)	AluSz6|SINE|Alu	4927	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
58682	chr12	132545771	132546130	+	0	NA	intron (NM_001382740, intron 4 of 11)	intron (NM_001382740, intron 4 of 11)	-36047	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
160852	chr3	33098521	33098930	+	0	NA	Intergenic	L1MC4|LINE|L1	-1495	NM_001135602	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
66115	chr14	60089921	60090380	+	0	NA	Intergenic	Intergenic	-1761	NM_022495	64430		NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex 4	protein-coding
203266	chr6	169699871	169700030	+	0	NA	intron (NR_146876, intron 1 of 15)	AluJb|SINE|Alu	2079	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
173232	chr4	6918271	6919030	+	0	NA	intron (NM_020773, intron 1 of 13)	MIRb|SINE|MIR	8824	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
29412	chr10	70171871	70172230	+	0	NA	Intergenic	Intergenic	-1536	NM_020150	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
8644	chr1	41751051	41752550	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	167122	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
170164	chr3	183578671	183579030	+	0	NA	Intergenic	Intergenic	-23144	NM_130446	89857		NM_130446	ENSG00000172578	KLHL6	-	kelch like family member 6	protein-coding
46905	chr11	134207301	134207830	+	0	NA	intron (NM_001372068, intron 7 of 34)	AluSc|SINE|Alu	16402	NM_001372065	23310		NM_015261	ENSG00000151503	NCAPD3	CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6	non-SMC condensin II complex subunit D3	protein-coding
141720	chr2	241854801	241855230	+	0	NA	intron (NM_005018, intron 1 of 4)	intron (NM_005018, intron 1 of 4)	3879	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
125410	chr2	11742951	11743250	+	0	NA	intron (NM_001261427, intron 2 of 20)	intron (NM_001261427, intron 2 of 20)	-3532	NM_001349206	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
167665	chr3	129936601	129937200	+	0	NA	Intergenic	MER51A|LTR|ERV1	-37820	NM_007117	7200		NM_007117	ENSG00000170893	TRH	Pro-TRH|TRF	thyrotropin releasing hormone	protein-coding
72094	chr15	28918851	28920150	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	-2137	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
174752	chr4	47010421	47011530	+	0	NA	Intergenic	Intergenic	-17394	NM_000809	2557		NM_000809	ENSG00000109158	GABRA4	-	gamma-aminobutyric acid type A receptor subunit alpha4	protein-coding
161217	chr3	39178821	39179080	+	0	NA	Intergenic	Intergenic	13645	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
235245	chrX	41512371	41512930	+	0	NA	Intergenic	Intergenic	65190	NM_022567	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
191334	chr6	7108401	7109880	+	0	NA	intron (NM_001003698, intron 1 of 11)	CpG	1179	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
83214	chr16	23679701	23680100	+	0	NA	intron (NM_005030, intron 1 of 9)	intron (NM_005030, intron 1 of 9)	1011	NM_005030	5347		NM_005030	ENSG00000166851	PLK1	PLK|STPK13	polo like kinase 1	protein-coding
200612	chr6	136763701	136763900	+	0	NA	intron (NM_005923, intron 1 of 29)	MSTC|LTR|ERVL-MaLR	-20247	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
84105	chr16	29640651	29641310	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21970	NM_001030288	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
176018	chr4	82303101	82303330	+	0	NA	Intergenic	L1PA5|LINE|L1	70776	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
71348	chr14	105465871	105466030	+	0	NA	intron (NM_001203258, intron 16 of 20)	intron (NM_001203258, intron 16 of 20)	-6995	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
39097	chr11	48020021	48020750	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	39826	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
194681	chr6	33679071	33679430	+	0	NA	intron (NM_002224, intron 30 of 57)	L2c|LINE|L2	-18878	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
203298	chr6	169990001	169990680	+	0	NA	Intergenic	Intergenic	27717	NR_027434	100131532		NR_027434		LOC100131532	-	uncharacterized LOC100131532	ncRNA
38512	chr11	45887851	45888750	+	0	NA	intron (NM_005456, intron 1 of 11)	MIR|SINE|MIR	2649	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
199949	chr6	127916451	127916780	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	2016	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
191001	chr6	3065221	3065900	+	0	NA	intron (NM_001354931, intron 1 of 9)	intron (NM_001354931, intron 1 of 9)	1593	NM_003804	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
69545	chr14	96508851	96509180	+	0	NA	intron (NM_001293628, intron 1 of 21)	intron (NM_001293628, intron 1 of 21)	6150	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
84498	chr16	30496101	30496700	+	0	NA	intron (NM_002209, intron 14 of 30)	intron (NM_002209, intron 14 of 30)	-7519	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
225434	chr9	35076851	35077150	+	0	NA	exon (NM_004629, exon 6 of 14)	exon (NM_004629, exon 6 of 14)	2942	NM_004629	2189		NM_004629	ENSG00000221829	FANCG	FAG|XRCC9	FA complementation group G	protein-coding
181521	chr5	43040001	43041600	+	0	NA	promoter-TSS (NM_001014279)	promoter-TSS (NM_001014279)	-481	NM_001014279	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
197830	chr6	87908951	87909250	+	0	NA	intron (NR_110869, intron 2 of 4)	intron (NR_110869, intron 2 of 4)	124240	NR_110869	101928911		NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA
21040	chr1	203038121	203038600	+	0	NA	intron (NM_001304332, intron 1 of 28)	intron (NM_001304332, intron 1 of 28)	11869	NM_001304332	8497		NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding
38388	chr11	44860051	44860780	+	0	NA	5' UTR (NM_130783, exon 3 of 10)	5' UTR (NM_130783, exon 3 of 10)	89745	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
168287	chr3	141498451	141499590	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	11993	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
152374	chr22	20511351	20511980	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	3618	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
4065	chr1	19063271	19063630	+	0	NA	Intergenic	Intergenic	-106774	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
90300	chr17	1058251	1058580	+	0	NA	intron (NM_001282149, intron 6 of 17).3	AluSq2|SINE|Alu	20578	NM_001282149	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
52746	chr12	56640901	56641280	+	0	NA	intron (NM_001686, intron 7 of 9)	AluSq2|SINE|Alu	2664	NR_003046	692090		NR_003046		SNORD59B	U59B	small nucleolar RNA, C/D box 59B	snoRNA
209821	chr7	88202301	88202500	+	0	NA	3' UTR (NM_001324418, exon 32 of 32)	3' UTR (NM_001324418, exon 32 of 32)	-14260	NR_120517	102723885		NR_120517		SRI-AS1	-	SRI antisense RNA 1	ncRNA
191280	chr6	6546121	6546380	+	0	NA	intron (NR_026970, intron 3 of 7)	CpG	-42470	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
16737	chr1	155261501	155263250	+	0	NA	promoter-TSS (NM_005698)	promoter-TSS (NM_005698)	-15	NM_005698	10067		NM_005698	ENSG00000116521	SCAMP3	C1orf3	secretory carrier membrane protein 3	protein-coding
26644	chr10	22550721	22551230	+	0	NA	intron (NM_001330062, intron 6 of 9)	intron (NM_001330062, intron 6 of 9)	-113046	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
121187	chr19	46513271	46513950	+	0	NA	intron (NM_001205281, intron 3 of 3)	CpG	-17743	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
175486	chr4	73222621	73223430	+	0	NA	promoter-TSS (NM_001286771)	promoter-TSS (NM_001286771)	32	NM_001286771	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
30505	chr10	79319901	79320350	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	-27344	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
79953	chr16	1767521	1768100	+	0	NA	exon (NM_001040439, exon 27 of 31)	exon (NM_001040439, exon 27 of 31)	3899	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
111906	chr19	4684801	4685000	+	0	NA	non-coding (NR_164163, exon 3 of 3)	non-coding (NR_164163, exon 3 of 3)	5618	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
76039	chr15	72226471	72227600	+	0	NA	intron (NM_001206798, intron 1 of 10)	intron (NM_001206798, intron 1 of 10)	2876	NM_001206799	5315		NM_002654	ENSG00000067225	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1|p58	pyruvate kinase M1/2	protein-coding
22925	chr1	225928201	225928500	+	0	NA	Intergenic	Intergenic	-4010	NM_001271681	29920		NM_013328	ENSG00000143811	PYCR2	HLD10|P5CR2	pyrroline-5-carboxylate reductase 2	protein-coding
170505	chr3	186254671	186255000	+	0	NA	intron (NM_001346, intron 17 of 24)	intron (NM_001346, intron 17 of 24)	107399	NM_001080745	1608		NM_001346	ENSG00000058866	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase gamma	protein-coding
71702	chr15	20302601	20302800	+	0	NA	Intergenic	Intergenic	19956	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
169796	chr3	174979321	174979400	+	0	NA	intron (NM_207015, intron 1 of 13)	AluY|SINE|Alu	120026	NM_207015	254827		NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase like 2	protein-coding
55005	chr12	96367001	96367380	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSx3|SINE|Alu	33249	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
128117	chr2	48313701	48315100	+	0	NA	promoter-TSS (NM_001375447)	promoter-TSS (NM_001375447)	101	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
110553	chr19	2103101	2103680	+	0	NA	intron (NM_001374799, intron 31 of 31)	intron (NM_001374799, intron 31 of 31)	6475	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
122535	chr19	49635401	49635600	+	0	NA	3' UTR (NM_006270, exon 6 of 6)	3' UTR (NM_006270, exon 6 of 6)	4643	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
198210	chr6	97394101	97394400	+	0	NA	intron (NR_110757, intron 1 of 4)	intron (NR_110757, intron 1 of 4)	88664	NR_110757	101927314		NR_110757	ENSG00000271860	LOC101927314	-	uncharacterized LOC101927314	ncRNA
207911	chr7	50610171	50611020	+	0	NA	intron (NM_001371008, intron 10 of 15)	MIR|SINE|MIR	-45190	NM_001082971	1644		NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
111656	chr19	4216871	4217430	+	0	NA	exon (NM_133475, exon 18 of 22)	exon (NM_133475, exon 18 of 22)	-12373	NM_005755	10148		NM_005755	ENSG00000105246	EBI3	IL-27B|IL27B|IL35B	Epstein-Barr virus induced 3	protein-coding
143342	chr20	25853321	25854300	+	0	NA	non-coding (NR_110001, exon 1 of 3)	non-coding (NR_110001, exon 1 of 3)	211	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
113867	chr19	10660371	10660880	+	0	NA	intron (NM_153464, intron 1 of 17)	intron (NM_153464, intron 1 of 17)	6279	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
211150	chr7	102565501	102565700	+	0	NA	intron (NM_001097615, intron 4 of 8)	intron (NM_001097615, intron 4 of 8)	7021	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
1523	chr1	3032651	3033550	+	0	NA	Intergenic	Intergenic	11633	NM_080431	140625		NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin related protein T2	protein-coding
217578	chr8	29497251	29498030	+	0	NA	Intergenic	Intergenic	-146956	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
130782	chr2	86846621	86847080	+	0	NA	intron (NM_172213, intron 3 of 5)	intron (NM_172213, intron 3 of 5)	-14975	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
43511	chr11	79100251	79100350	+	0	NA	intron (NM_001098816, intron 4 of 33)	intron (NM_001098816, intron 4 of 33)	301809	NR_030598	100126333		NR_030598	ENSG00000211997	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA
54878	chr12	95654151	95655730	+	0	NA	intron (NR_077225, intron 1 of 4)	intron (NR_077225, intron 1 of 4)	5685	NR_077225	100132594		NR_077225	ENSG00000293270	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
186810	chr5	139382821	139383450	+	0	NA	intron (NM_152685, intron 1 of 14)	intron (NM_152685, intron 1 of 14)	162	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
173066	chr4	6171101	6171700	+	0	NA	intron (NM_144720, intron 1 of 12)	(ACC)n|Simple_repeat|Simple_repeat	23219	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
84733	chr16	30931821	30932080	+	0	NA	intron (NM_001382781, intron 7 of 10)	AluSx1|SINE|Alu	7375	NM_001099784	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
156438	chr22	41236251	41236580	+	0	NA	intron (NM_138481, intron 4 of 5)	intron (NM_138481, intron 4 of 5)	4516	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
52054	chr12	54021371	54022050	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	4822	NM_014620	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
38716	chr11	46678071	46678600	+	0	NA	3' UTR (NM_004308, exon 13 of 13)	3' UTR (NM_004308, exon 13 of 13)	22284	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
197054	chr6	53492871	53493400	+	0	NA	Intergenic	Intergenic	51966	NM_001197115	2729		NM_001498	ENSG00000001084	GCLC	GCL|GCS|GLCL|GLCLC	glutamate-cysteine ligase catalytic subunit	protein-coding
28607	chr10	58143851	58144150	+	0	NA	Intergenic	LTR8B|LTR|ERV1	123894	NM_152230	253430		NM_152230	ENSG00000151151	IPMK	-	inositol polyphosphate multikinase	protein-coding
138714	chr2	213135501	213136130	+	0	NA	intron (NM_001371277, intron 3 of 6)	AluSx3|SINE|Alu	14622	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
214491	chr7	150420801	150421400	+	0	NA	Intergenic	Intergenic	-12554	NR_034033	285972		NR_034033	ENSG00000242258	LINC00996	-	long intergenic non-protein coding RNA 996	ncRNA
96360	chr17	40089471	40089830	+	0	NA	3' UTR (NM_199334, exon 9 of 9)	3' UTR (NM_199334, exon 9 of 9)	10939	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
149167	chr21	17815951	17816250	+	0	NA	intron (NM_017447, intron 2 of 4)	intron (NM_017447, intron 2 of 4)	3256	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
22209	chr1	212469421	212469680	+	0	NA	Intergenic	AluSc|SINE|Alu	36630	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
198128	chr6	90413671	90414550	+	0	NA	Intergenic	Intergenic	101368	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
201713	chr6	149720601	149721730	+	0	NA	Intergenic	AluJo|SINE|Alu	-2909	NM_001270519	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
87212	chr16	69453751	69454400	+	0	NA	intron (NM_030579, intron 3 of 4)	intron (NM_030579, intron 3 of 4)	29456	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
112089	chr19	5436671	5436830	+	0	NA	Intergenic	Intergenic	-18667	NM_181710	148066		NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
232504	chr9	136266821	136268280	+	0	NA	intron (NM_001378188, intron 15 of 25)	CpG-29085	-21738	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
52542	chr12	56131671	56132280	+	0	NA	intron (NM_015292, intron 7 of 30)	intron (NM_015292, intron 7 of 30)	3708	NM_015292	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
9312	chr1	46524101	46524500	+	0	NA	Intergenic	Intergenic	11215	NM_001357063	105378696		NM_001357063	ENSG00000282881	TMEM275	-	transmembrane protein 275	protein-coding
51146	chr12	50125421	50125880	+	0	NA	Intergenic	L1MEd|LINE|L1	13414	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
193803	chr6	31440551	31440850	+	0	NA	promoter-TSS (NR_144465)	promoter-TSS (NR_144465)	-967	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
54171	chr12	76878601	76879980	+	0	NA	promoter-TSS (NM_001300965)	promoter-TSS (NM_001300965)	-271	NM_001300965	1466		NM_001321	ENSG00000175183	CSRP2	CRP2|LMO5|SmLIM	cysteine and glycine rich protein 2	protein-coding
16620	chr1	155081651	155082300	+	0	NA	intron (NM_004952, intron 1 of 4)	CpG	3138	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
214760	chr7	151075271	151075430	+	0	NA	exon (NM_003040, exon 20 of 23)	exon (NM_003040, exon 20 of 23)	5459	NM_006712	10922		NM_006712	ENSG00000164896	FASTK	FAST	Fas activated serine/threonine kinase	protein-coding
208783	chr7	73580901	73581100	+	0	NA	Intergenic	AluJr|SINE|Alu	-2421	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
96395	chr17	40135751	40136330	+	0	NA	3' UTR (NM_001012241, exon 10 of 10)	3' UTR (NM_001012241, exon 10 of 10)	-4497	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
70354	chr14	101872201	101872750	+	0	NA	intron (NM_178587, intron 2 of 11)	AluJb|SINE|Alu	62612	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
205708	chr7	23356751	23357950	+	0	NA	intron (NM_006547, intron 5 of 14)	AluSq2|SINE|Alu	-39096	NR_145734	109616981		NR_145734	ENSG00000212264	SNORD65C	-	small nucleolar RNA, C/D box 65C	snoRNA
228662	chr9	107286171	107286830	+	0	NA	intron (NM_001244713, intron 1 of 9)	intron (NM_001244713, intron 1 of 9)	1731	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
131784	chr2	98490121	98490380	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	44240	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
202661	chr6	158779401	158780130	+	0	NA	intron (NM_003379, intron 6 of 12)	AluSz|SINE|Alu	-15012	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
203032	chr6	163782771	163782930	+	0	NA	Intergenic	Intergenic	-111366	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
11024	chr1	84876271	84877180	+	0	NA	intron (NM_012152, intron 1 of 2)	intron (NM_012152, intron 1 of 2)	16481	NM_012152	23566		NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
201614	chr6	149383571	149383730	+	0	NA	intron (NM_001369506, intron 4 of 7)	AluSx|SINE|Alu	-16612	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
127906	chr2	46300451	46301130	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	3383	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
85071	chr16	32253501	32254430	+	0	NA	non-coding (NR_158188, exon 2 of 4)	non-coding (NR_158188, exon 2 of 4)	641	NR_158188	729264		NM_001243722	ENSG00000205456	TP53TG3D	TP53TG3|TP53TG3B|TP53TG3C|TP53TG3E|TP53TG3F	TP53 target 3D	protein-coding
81079	chr16	4342071	4342230	+	0	NA	intron (NM_016069, intron 2 of 4)	AluSc|SINE|Alu	9171	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
190332	chr5	179627271	179627430	+	0	NA	intron (NM_001364226, intron 1 of 13)	AluJr|SINE|Alu	-2750	NM_001364237	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
41807	chr11	66955971	66956330	+	0	NA	intron (NM_001040716, intron 1 of 22)	intron (NM_001040716, intron 1 of 22)	2233	NM_000920	5091		NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
71506	chr14	106039321	106039630	+	0	NA	Intergenic	Intergenic	-67206	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
202805	chr6	159168921	159169980	+	0	NA	promoter-TSS (NM_032532)	promoter-TSS (NM_032532)	50	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
36590	chr11	6711701	6712180	+	0	NA	Intergenic	LTR13|LTR|ERVK	9939	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
138613	chr2	208812051	208812150	+	0	NA	intron (NR_136588, intron 3 of 5)	L1PA2|LINE|L1	269458	NR_136588	101927960		NR_136588		LOC101927960	-	uncharacterized LOC101927960	ncRNA
72102	chr15	28933701	28934480	+	0	NA	promoter-TSS (NM_001353791).3	promoter-TSS (NM_001353791).3	86	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
106388	chr18	13378371	13378730	+	0	NA	intron (NM_001378098, intron 1 of 5)	intron (NM_001378098, intron 1 of 5)	39947	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
212982	chr7	130979721	130980500	+	0	NA	intron (NR_109851, intron 4 of 5)	intron (NR_109851, intron 4 of 5)	66646	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
146113	chr20	48431251	48431550	+	0	NA	Intergenic	Intergenic	71489	NR_026958	284749		NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
230169	chr9	127775871	127777300	+	0	NA	intron (NM_170600, intron 1 of 11)	intron (NM_170600, intron 1 of 11)	2081	NM_170600	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
100167	chr17	58623821	58624280	+	0	NA	intron (NM_198393, intron 3 of 32)	AluY|SINE|Alu	67995	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
117187	chr19	19362121	19362750	+	0	NA	Intergenic	Intergenic	-23408	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
169592	chr3	170910701	170911250	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	-2338	NM_020390	56648		NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
212213	chr7	120798701	120799100	+	0	NA	intron (NM_012338, intron 7 of 7)	intron (NM_012338, intron 7 of 7)	59244	NM_012338	23554		NM_012338	ENSG00000106025	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
127656	chr2	43156771	43156930	+	0	NA	Intergenic	AluSx4|SINE|Alu	-54405	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
131683	chr2	97723621	97724080	+	0	NA	intron (NM_001079, intron 2 of 13)	intron (NM_001079, intron 2 of 13)	-9450	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
135405	chr2	160919051	160919230	+	0	NA	Intergenic	Intergenic	-217815	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
227150	chr9	86330001	86330200	+	0	NA	intron (NM_001185074, intron 6 of 19)	AluSx1|SINE|Alu	24310	NM_001185074	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
36565	chr11	6649071	6649230	+	0	NA	intron (NM_003737, intron 1 of 20)	MIRb|SINE|MIR	6659	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
221578	chr8	125230701	125230930	+	0	NA	intron (NR_146191, intron 6 of 8)	intron (NR_146191, intron 6 of 8)	138955	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
233937	chrX	2382551	2382950	+	0	NA	intron (NM_145177, intron 3 of 6)	(ATCATT)n|Simple_repeat|Simple_repeat	117789	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
208684	chr7	73232251	73232350	+	0	NA	intron (NR_003186, intron 5 of 7)	AluSq2|SINE|Alu	11661	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
134003	chr2	130874651	130874750	+	0	NA	intron (NM_001375900, intron 1 of 12)	L1MD1|LINE|L1	37786	NM_001375901	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
103939	chr17	79842661	79843800	+	0	NA	Intergenic	CpG	-3790	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
214517	chr7	150483571	150483730	+	0	NA	Intergenic	Intergenic	-31222	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
53317	chr12	64607671	64608030	+	0	NA	Intergenic	AluJr|SINE|Alu	-2645	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
160919	chr3	36764001	36764330	+	0	NA	Intergenic	CpG	-24304	NM_033403	85443		NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin like kinase 3	protein-coding
130586	chr2	85852351	85852500	+	0	NA	intron (NM_001354233, intron 3 of 7)	intron (NM_001354233, intron 3 of 7)	1746	NM_001354248	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
226740	chr9	76009501	76009700	+	0	NA	intron (NM_006200, intron 3 of 20)	AluSc|SINE|Alu	118927	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
229543	chr9	122898951	122900230	+	0	NA	intron (NM_018835, intron 1 of 17)	intron (NM_018835, intron 1 of 17)	5769	NM_001354486	54542		NM_018835	ENSG00000056586	RC3H2	MNAB|RNF164	ring finger and CCCH-type domains 2	protein-coding
77077	chr15	78903221	78903730	+	0	NA	Intergenic	AluSx4|SINE|Alu	30486	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
67273	chr14	69156101	69156800	+	0	NA	Intergenic	AluJb|SINE|Alu	-3253	NM_001284206	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
66476	chr14	61573921	61574180	+	0	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-3397	NR_110416	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
179376	chr4	183502251	183502550	+	0	NA	intron (NR_033995, intron 1 of 2)	intron (NR_033995, intron 1 of 2)	2115	NR_033995	389247		NR_033995		ING2-DT	-	ING2 divergent transcript	ncRNA
130807	chr2	86971071	86971230	+	0	NA	intron (NM_001382344, intron 8 of 22)	AluY|SINE|Alu	29032	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
21117	chr1	203626401	203627260	+	0	NA	promoter-TSS (NM_001684)	promoter-TSS (NM_001684)	-2	NM_001365783	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
166026	chr3	108394601	108394830	+	0	NA	intron (NM_014981, intron 36 of 41)	intron (NM_014981, intron 36 of 41)	82930	NM_001282557	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
70633	chr14	102826301	102826500	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	48921	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
200809	chr6	137908671	137909300	+	0	NA	Intergenic	Intergenic	36815	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
87724	chr16	75099651	75100700	+	0	NA	intron (NM_032268, intron 2 of 4)	intron (NM_032268, intron 2 of 4)	16597	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
44065	chr11	95410951	95411260	+	0	NA	Intergenic	L1PA6|LINE|L1	-178630	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
33241	chr10	114303851	114304270	+	0	NA	intron (NM_032550, intron 11 of 18)	intron (NM_032550, intron 11 of 18)	64446	NM_001320804	340706		NM_198496	ENSG00000165816	VWA2	AMACO|CCSP-2|CCSP2|NET42	von Willebrand factor A domain containing 2	protein-coding
83526	chr16	27464801	27465850	+	0	NA	exon (NM_001286242, exon 33 of 37)	exon (NM_001286242, exon 33 of 37)	-11932	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
201136	chr6	142899501	142899780	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	45536	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
69458	chr14	94769771	94770300	+	0	NA	promoter-TSS (NR_144432)	promoter-TSS (NR_144432)	78	NM_173849	145258		NM_173849	ENSG00000133937	GSC	GSC1|SAMS	goosecoid homeobox	protein-coding
232165	chr9	134159021	134159280	+	0	NA	3' UTR (NM_017588, exon 14 of 14)	3' UTR (NM_017588, exon 14 of 14)	5414	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
17779	chr1	159161001	159161400	+	0	NA	Intergenic	Intergenic	-10415	NM_001346510	57863		NM_021189	ENSG00000162706	CADM3	BIgR|CMT2FF|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3	cell adhesion molecule 3	protein-coding
189111	chr5	170337901	170338300	+	0	NA	Intergenic	MIR|SINE|MIR	6707	NR_108024	257358		NM_001025454	ENSG00000235172	LINC01366	-	long intergenic non-protein coding RNA 1366	ncRNA
161854	chr3	45772651	45772950	+	0	NA	intron (NM_001385683, intron 4 of 10)	intron (NM_001385683, intron 4 of 10)	23736	NM_001385683	54716		NM_020208	ENSG00000163817	SLC6A20	IMINO|SIT1|XT3|Xtrp3	solute carrier family 6 member 20	protein-coding
93342	chr17	18215201	18215400	+	0	NA	Intergenic	AluY|SINE|Alu	-10335	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
101630	chr17	68225121	68225780	+	0	NA	intron (NM_001346471, intron 1 of 6)	intron (NM_001346471, intron 1 of 6)	19321	NM_001346472	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
68162	chr14	75660301	75662400	+	0	NA	promoter-TSS (NM_007176)	promoter-TSS (NM_007176)	104	NM_015072	23093		NM_015072	ENSG00000119685	TTLL5	CORD19|KIAA0998|STAMP	tubulin tyrosine ligase like 5	protein-coding
229270	chr9	120393921	120394450	+	0	NA	intron (NM_018249, intron 36 of 37)	L2c|LINE|L2	-149135	NR_029604	406939		NR_029604	ENSG00000207814	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA
76487	chr15	74900421	74900930	+	0	NA	non-coding (NR_135853, exon 7 of 7)	non-coding (NR_135853, exon 7 of 7)	6176	NR_135852	57184		NM_020447	ENSG00000178761	FAM219B	C15orf17	family with sequence similarity 219 member B	protein-coding
157923	chr22	49780501	49780700	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	43731	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
171162	chr3	195631121	195631550	+	0	NA	Intergenic	Intergenic	20824	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
88051	chr16	81451801	81452600	+	0	NA	intron (NM_198390, intron 1 of 20)	MIRb|SINE|MIR	7030	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
67086	chr14	68248471	68248980	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	380062	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
156867	chr22	42079051	42081150	+	0	NA	TTS (NM_001002034)	TTS (NM_001002034)	151	NR_146717	91689		NM_033318	ENSG00000183172	SMDT1	C22orf32|DDDD|EMRE	single-pass membrane protein with aspartate rich tail 1	protein-coding
167350	chr3	128762051	128762150	+	0	NA	intron (NM_004637, intron 1 of 5)	L1MB4|LINE|L1	35917	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
62070	chr13	94323671	94324600	+	0	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	-136144	NR_046535	100873972		NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
44090	chr11	95705121	95705880	+	0	NA	Intergenic	Intergenic	84282	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
162915	chr3	49414301	49414700	+	0	NA	intron (NM_022171, intron 2 of 2)	AluSq2|SINE|Alu	2294	NM_022171	6988		NM_022171	ENSG00000145022	TCTA	-	T cell leukemia translocation altered	protein-coding
134309	chr2	135987171	135987530	+	0	NA	intron (NR_110199, intron 1 of 3)	ERV3-16A3_I-int|LTR|ERVL	-1666	NM_001293312	1615		NM_001349	ENSG00000115866	DARS1	DARS|HBSL|aspRS	aspartyl-tRNA synthetase 1	protein-coding
204307	chr7	2690971	2691130	+	0	NA	intron (NM_001321766, intron 1 of 6)	AluSz|SINE|Alu	2848	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
59822	chr13	30418701	30419100	+	0	NA	TTS (NR_125771)	TTS (NR_125771)	3344	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
46229	chr11	124586351	124586550	+	0	NA	Intergenic	Intergenic	16453	NM_001005194	390275		NM_001005194	ENSG00000196119	OR8A1	OR11-318|OST025	olfactory receptor family 8 subfamily A member 1	protein-coding
80297	chr16	2263001	2263830	+	0	NA	intron (NM_080594, intron 3 of 7)	intron (NM_080594, intron 3 of 7)	3922	NM_001286625	10921		NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
59993	chr13	32418421	32418680	+	0	NA	intron (NR_148480, intron 1 of 8)	THE1C-int|LTR|ERVL-MaLR	9580	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
112383	chr19	6064651	6064950	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	45700	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
16571	chr1	155000311	155001500	+	0	NA	Intergenic	CpG	-1744	NM_001377452	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
146736	chr20	50751001	50751350	+	0	NA	3' UTR (NM_032521, exon 3 of 3)	3' UTR (NM_032521, exon 3 of 3)	19595	NM_032521	84612		NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding
93708	chr17	19467071	19467230	+	0	NA	Intergenic	Intergenic	55918	NM_007148	7732		NM_007148	ENSG00000128482	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
75648	chr15	67456871	67457330	+	0	NA	intron (NR_040052, intron 3 of 5)	intron (NR_040052, intron 3 of 5)	63873	NR_040055	100506686		NR_040051	ENSG00000259673	IQCH-AS1	-	IQCH antisense RNA 1	ncRNA
173098	chr4	6327001	6328050	+	0	NA	intron (NM_001206995, intron 9 of 9)	intron (NM_001206995, intron 9 of 9)	54343	NM_181876	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
238730	chrX	154239401	154239600	+	0	NA	Intergenic	L1MB5|LINE|L1	-18038	NM_001048181	728458		NM_001048181	ENSG00000166160	OPN1MW2	GOP	opsin 1, medium wave sensitive 2	protein-coding
104231	chr17	80695071	80695300	+	0	NA	intron (NM_020761, intron 3 of 33)	MIR|SINE|MIR	110447	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
92517	chr17	8900421	8900880	+	0	NA	intron (NM_001142633, intron 5 of 18)	intron (NM_001142633, intron 5 of 18)	11867	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
103751	chr17	78921151	78921250	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	4187	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
23346	chr1	228142371	228143050	+	0	NA	intron (NM_000858, intron 2 of 8)	intron (NM_000858, intron 2 of 8)	-1986	NM_001159391	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
206218	chr7	28615251	28615350	+	0	NA	intron (NM_182899, intron 4 of 9)	intron (NM_182899, intron 4 of 9)	-70833	NM_001011666	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
27660	chr10	33030271	33030630	+	0	NA	Intergenic	AluJo|SINE|Alu	-72220	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
40965	chr11	65357801	65358680	+	0	NA	TTS (NM_145719)	TTS (NM_145719)	3489	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
110085	chr19	1515771	1516680	+	0	NA	Intergenic	Intergenic	-3206	NM_213604	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
133278	chr2	113510321	113510580	+	0	NA	Intergenic	SATR1|Satellite|Satellite	11366	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
107065	chr18	32771251	32772000	+	0	NA	intron (NM_020805, intron 1 of 8)	CpG	1398	NM_020805	57565		NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding
165625	chr3	101720751	101721550	+	0	NA	Intergenic	Intergenic	-3464	NM_024548	79598		NM_024548	ENSG00000182504	CEP97	2810403B08Rik|LRRIQ2	centrosomal protein 97	protein-coding
159813	chr3	16355951	16356450	+	0	NA	intron (NM_015150, intron 7 of 9)	intron (NM_015150, intron 7 of 9)	90988	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
119893	chr19	41550471	41551000	+	0	NA	intron (NM_001288773, intron 1 of 7)	AluSx|SINE|Alu	1217	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
4993	chr1	24324551	24325680	+	0	NA	intron (NM_021180, intron 1 of 15)	intron (NM_021180, intron 1 of 15)	2075	NM_021180	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
27695	chr10	33137921	33138330	+	0	NA	Intergenic	Intergenic	-21318	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
40990	chr11	65393621	65394280	+	0	NA	intron (NM_001300832, intron 3 of 9)	intron (NM_001300832, intron 3 of 9)	7313	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
144434	chr20	35454421	35455980	+	0	NA	promoter-TSS (NM_001319138)	promoter-TSS (NM_001319138)	-398	NM_007186	11190		NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1|CRDHL2	centrosomal protein 250	protein-coding
48242	chr12	8296901	8297200	+	0	NA	Intergenic	MER91C|DNA|hAT-Tip100	-54104	NR_024254	653113		NR_024254		FAM86FP	-	family with sequence similarity 86, member A pseudogene	pseudo
99175	chr17	49416971	49417130	+	0	NA	Intergenic	AluSp|SINE|Alu	-2145	NM_001281715	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
174556	chr4	40215201	40216100	+	0	NA	intron (NM_001278361, intron 2 of 3)	L1MEg|LINE|L1	18619	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
2660	chr1	10472021	10473180	+	0	NA	promoter-TSS (NM_213566)	promoter-TSS (NM_213566)	-71	NM_213566	1676		NM_004401	ENSG00000160049	DFFA	DFF-45|DFF1|ICAD	DNA fragmentation factor subunit alpha	protein-coding
137352	chr2	196152151	196152730	+	0	NA	intron (NM_004226, intron 3 of 7)	L1MC5a|LINE|L1	19138	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
113848	chr19	10638101	10638830	+	0	NA	intron (NM_001363611, intron 20 of 22)	AluSz6|SINE|Alu	12912	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
33958	chr10	124639201	124639750	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-64553	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
11394	chr1	89671851	89672600	+	0	NA	intron (NM_032270, intron 1 of 2)	L2c|LINE|L2	39105	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
85803	chr16	56971101	56971700	+	0	NA	intron (NM_000078, intron 7 of 15)	intron (NM_000078, intron 7 of 15)	9450	NM_000078	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
204665	chr7	5457821	5458080	+	0	NA	intron (NM_001363441, intron 4 of 4)	intron (NM_001363441, intron 4 of 4)	-29023	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
88826	chr16	87457821	87458080	+	0	NA	intron (NM_015144, intron 2 of 12)	intron (NM_015144, intron 2 of 12)	35074	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
100239	chr17	59357921	59358180	+	0	NA	intron (NM_001005404, intron 2 of 4)	MIR3|SINE|MIR	-8033	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
230237	chr9	127877251	127878280	+	0	NA	promoter-TSS (NM_000476)	promoter-TSS (NM_000476)	-90	NM_000476	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
75426	chr15	65786251	65786830	+	0	NA	intron (NM_001376919, intron 1 of 31)	FLAM_C|SINE|Alu	5753	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
179043	chr4	165256201	165256730	+	0	NA	intron (NM_001161522, intron 3 of 13)	intron (NM_001161522, intron 3 of 13)	23558	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
78403	chr15	92010901	92011300	+	0	NA	intron (NM_013272, intron 2 of 9)	L2a|LINE|L2	156796	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
131298	chr2	96108701	96108950	+	0	NA	Intergenic	Intergenic	7746	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
166277	chr3	112489021	112489280	+	0	NA	intron (NM_001085357, intron 1 of 3)	intron (NM_001085357, intron 1 of 3)	10322	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
8396	chr1	40393051	40393630	+	0	NA	promoter-TSS (NM_001198979)	promoter-TSS (NM_001198979)	-5	NM_001198979	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
163219	chr3	50250201	50250850	+	0	NA	intron (NM_001166425, intron 1 of 8)	L2c|LINE|L2	3615	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
35216	chr11	819901	821130	+	0	NA	intron (NM_020376, intron 2 of 9)	intron (NM_020376, intron 2 of 9)	1601	NM_020376	57104		NM_020376	ENSG00000177666	PNPLA2	1110001C14Rik|ATGL|FP17548|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin like phospholipase domain containing 2	protein-coding
60855	chr13	45621971	45622280	+	0	NA	Intergenic	L1PA7|LINE|L1	-6386	NM_182542	220081		NM_182542	ENSG00000165837	ERICH6B	FAM194B	glutamate rich 6B	protein-coding
171078	chr3	195468051	195468550	+	0	NA	Intergenic	MIRc|SINE|MIR	-25280	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
212495	chr7	128568351	128568650	+	0	NA	Intergenic	AluSq|SINE|Alu	-72741	NR_024368	402483		NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
130034	chr2	74414771	74415730	+	0	NA	exon (NM_001316766, exon 2 of 2)	exon (NM_001316766, exon 2 of 2)	2467	NM_001145054	388963		NM_001145054	ENSG00000284308	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
97383	chr17	43350851	43351550	+	0	NA	Intergenic	LTR13A|LTR|ERVK	37698	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
125829	chr2	24355171	24355930	+	0	NA	intron (NM_147152, intron 1 of 29)	L1PA8A|LINE|L1	4986	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
111869	chr19	4644101	4645230	+	0	NA	intron (NM_001167942, intron 1 of 1)	AluSx|SINE|Alu	4648	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
74166	chr15	55290401	55291230	+	0	NA	Intergenic	Intergenic	-1002	NM_183235	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
17259	chr1	156377371	156377530	+	0	NA	exon (NM_020407, exon 2 of 10)	exon (NM_020407, exon 2 of 10)	8239	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
94269	chr17	28701801	28702080	+	0	NA	3' UTR (NM_001320755, exon 38 of 38)	3' UTR (NM_001320755, exon 38 of 38)	8164	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
63298	chr13	113982051	113982150	+	0	NA	intron (NM_001320822, intron 22 of 23).2	intron (NM_001320822, intron 22 of 23).2	-8024	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
238366	chrX	149924251	149924550	+	0	NA	Intergenic	LTR21A|LTR|ERV1	-5173	NM_001351114	101927685		NM_001351114	ENSG00000283463	HSFX4	-	heat shock transcription factor family, X-linked member 4	protein-coding
223566	chr8	144263371	144263750	+	0	NA	promoter-TSS (NR_107057)	promoter-TSS (NR_107057)	-823	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
69810	chr14	99208751	99209050	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	63297	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
130301	chr2	84920771	84920930	+	0	NA	Intergenic	AluY|SINE|Alu	15194	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
67753	chr14	73716551	73716850	+	0	NA	3' UTR (NM_194278, exon 12 of 12)	3' UTR (NM_194278, exon 12 of 12)	-2316	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
218131	chr8	41581471	41582150	+	0	NA	intron (NM_001363197, intron 1 of 12)	AluY|SINE|Alu	3294	NM_001363197	137964		NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
146360	chr20	49265801	49266000	+	0	NA	intron (NM_021035, intron 4 of 13)	L2b|LINE|L2	12157	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
156361	chr22	40961151	40961450	+	0	NA	intron (NM_014248, intron 2 of 4)	AluJo|SINE|Alu	9922	NM_014248	9978		NM_014248	ENSG00000100387	RBX1	BA554C12.1|RNF75|ROC1	ring-box 1	protein-coding
204801	chr7	5641751	5642550	+	0	NA	intron (NM_207111, intron 14 of 16)	intron (NM_207111, intron 14 of 16)	38311	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
122427	chr19	49464701	49465200	+	0	NA	intron (NM_001145396, intron 11 of 15)	intron (NM_001145396, intron 11 of 15)	-9265	NM_001204502	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
149239	chr21	25578051	25578550	+	0	NA	Intergenic	Intergenic	4320	NR_030784	406947		NR_030784	ENSG00000283904	MIR155	MIRN155|miRNA155|mir-155	microRNA 155	ncRNA
148929	chr21	9328771	9329100	+	0	NA	Intergenic	MER57A1|LTR|ERV1	-199174	NR_038329	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
186204	chr5	134302901	134303530	+	0	NA	intron (NM_001300853, intron 10 of 12)	AluSx|SINE|Alu	63859	NM_016508	51265		NM_016508	ENSG00000006837	CDKL3	NKIAMRE	cyclin dependent kinase like 3	protein-coding
64414	chr14	24178871	24179030	+	0	NA	intron (NM_001048205, intron 14 of 18).2	intron (NM_001048205, intron 14 of 18).2	6870	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
155514	chr22	38687701	38687900	+	0	NA	3' UTR (NM_001360236, exon 5 of 5)	3' UTR (NM_001360236, exon 5 of 5)	5843	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
115594	chr19	16031851	16031950	+	0	NA	Intergenic	HSAT5|Satellite|Satellite	-1813	NR_024335	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
96025	chr17	39246621	39247080	+	0	NA	Intergenic	Intergenic	9080	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
21319	chr1	204518301	204518500	+	0	NA	intron (NM_001204172, intron 1 of 2)	(AATCTTT)n|Simple_repeat|Simple_repeat	1994	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
25311	chr10	6215101	6215500	+	0	NA	exon (NM_001282630, exon 3 of 15)	exon (NM_001282630, exon 3 of 15)	12368	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
90471	chr17	1388321	1388830	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	11647	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
123189	chr19	52527051	52528750	+	0	NA	5' UTR (NM_001321424, exon 1 of 5)	5' UTR (NM_001321424, exon 1 of 5)	191	NM_001321424	388558		NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
53119	chr12	57818821	57819080	+	0	NA	TTS (NM_005730)	TTS (NM_005730)	-2881	NM_006576	10677		NM_006576	ENSG00000135407	AVIL	ADVIL|DOC6|NPHS21|p92	advillin	protein-coding
26683	chr10	22627471	22627930	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	86408	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
37814	chr11	33021751	33022050	+	0	NA	intron (NM_139160, intron 1 of 8)	intron (NM_139160, intron 1 of 8)	5718	NM_139160	91614		NM_139160	ENSG00000121690	DEPDC7	TR2|dJ85M6.4	DEP domain containing 7	protein-coding
237953	chrX	132750651	132751050	+	0	NA	intron (NM_001077188, intron 3 of 5)	intron (NM_001077188, intron 3 of 5)	83208	NR_046691	100874102		NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
73789	chr15	46104951	46105050	+	0	NA	Intergenic	L1PA3|LINE|L1	399805	NR_135680	105370802		NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA
221986	chr8	129999301	129999500	+	0	NA	intron (NM_001353269, intron 1 of 10)	MIRb|SINE|MIR	9053	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
3144	chr1	12480801	12481380	+	0	NA	intron (NM_018156, intron 66 of 68)	intron (NM_018156, intron 66 of 68)	-26156	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
211107	chr7	102508971	102510630	+	0	NA	intron (NM_001367767, intron 3 of 20)	intron (NM_001367767, intron 3 of 20)	7977	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
13087	chr1	111592171	111593380	+	0	NA	intron (NM_001370216, intron 1 of 7)	intron (NM_001370216, intron 1 of 7)	15543	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
182923	chr5	70721101	70721300	+	0	NA	intron (NR_146391, intron 1 of 10).3	L1PA16|LINE|L1	1411	NR_146391	653080		NR_146391		GUSBP16	-	GUSB pseudogene 16	pseudo
8588	chr1	41394571	41394730	+	0	NA	Intergenic	Intergenic	-18981	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
130978	chr2	87604051	87604350	+	0	NA	Intergenic	Intergenic	-25555	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
185714	chr5	132024701	132025180	+	0	NA	Intergenic	L2a|LINE|L2	-12872	NM_001205250	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
168051	chr3	136933321	136933780	+	0	NA	intron (NM_001190796, intron 1 of 2)	intron (NM_001190796, intron 1 of 2)	3048	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
24055	chr1	235302521	235303230	+	0	NA	intron (NM_016374, intron 2 of 23)	MIR|SINE|MIR	-24341	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
164911	chr3	71135251	71135800	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	-3328	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
230010	chr9	126985821	126987280	+	0	NA	intron (NM_001190729, intron 4 of 17)	intron (NM_001190729, intron 4 of 17)	24325	NM_001366401	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
45308	chr11	118154071	118154230	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	-1327	NM_174934	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
238398	chrX	150478771	150479730	+	0	NA	intron (NM_001177466, intron 3 of 5)	intron (NM_001177466, intron 3 of 5)	33796	NM_001177466	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
223598	chr8	144304671	144304830	+	0	NA	intron (NM_005526, intron 1 of 12)	AluSz|SINE|Alu	12565	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
109403	chr19	674471	674930	+	0	NA	Intergenic	Intergenic	-1692	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
4262	chr1	19649601	19650130	+	0	NA	intron (NM_001278166, intron 1 of 3)	AluJr|SINE|Alu	2255	NM_001278166	4681		NM_005380	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	NBL1, DAN family BMP antagonist	protein-coding
237603	chrX	123967721	123968180	+	0	NA	intron (NM_001282418, intron 2 of 33)	AluSg|SINE|Alu	6244	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
111735	chr19	4356771	4356930	+	0	NA	intron (NM_032868, intron 8 of 11)	AluSz|SINE|Alu	13288	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
86404	chr16	66746771	66747330	+	0	NA	intron (NM_001323955, intron 2 of 11)	intron (NM_001323955, intron 2 of 11)	4559	NM_006141	1783		NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding
224056	chr9	3523371	3523830	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	2401	NM_002919	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
228916	chr9	113069421	113069680	+	0	NA	Intergenic	Intergenic	-12826	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
7848	chr1	36351821	36352080	+	0	NA	intron (NM_032017, intron 7 of 11)	intron (NM_032017, intron 7 of 11)	-27796	NM_018166	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
20437	chr1	198497471	198497830	+	0	NA	Intergenic	L2a|LINE|L2	43030	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
214336	chr7	149413401	149413680	+	0	NA	Intergenic	L1PA14|LINE|L1	47522	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
29910	chr10	73165251	73165830	+	0	NA	intron (NM_007265, intron 1 of 13)	AluSx4|SINE|Alu	2468	NM_007265	11319		NM_007265	ENSG00000122882	ECD	GCR2|HSGT1|SGT1	ecdysoneless cell cycle regulator	protein-coding
234161	chrX	11144151	11144500	+	0	NA	intron (NM_013427, intron 10 of 12)	intron (NM_013427, intron 10 of 12)	32993	NM_005333	3052		NM_005333	ENSG00000004961	HCCS	CCHL|LSDMCA1|MCOPS7|MLS	holocytochrome c synthase	protein-coding
148194	chr20	63552641	63554810	+	0	NA	promoter-TSS (NM_001319153)	promoter-TSS (NM_001319153)	-434	NM_001319153	79025		NM_024059	ENSG00000125531	FNDC11	C20orf195	fibronectin type III domain containing 11	protein-coding
136694	chr2	181129401	181130080	+	0	NA	intron (NR_130784, intron 1 of 4)	LTR27|LTR|ERV1	5903	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
9730	chr1	53192651	53193550	+	0	NA	Intergenic	Intergenic	-3724	NM_001330589	1376		NM_000098	ENSG00000157184	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
62463	chr13	99363371	99363980	+	0	NA	intron (NR_026644, intron 7 of 8)	MLT1J|LTR|ERVL-MaLR	7544	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
181958	chr5	55064171	55064530	+	0	NA	Intergenic	L1MCa|LINE|L1	-38296	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
18185	chr1	160830271	160831180	+	0	NA	3' UTR (NM_016382, exon 9 of 9)	3' UTR (NM_016382, exon 9 of 9)	32162	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
185613	chr5	131427871	131428030	+	0	NA	intron (NM_001164387, intron 28 of 28)	AluJb|SINE|Alu	163897	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
404	chr1	1061971	1062930	+	0	NA	intron (NR_148960, intron 2 of 3)	intron (NR_148960, intron 2 of 3)	2716	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
45742	chr11	119144901	119145480	+	0	NA	Intergenic	Intergenic	-3862	NM_001348192	64137		NM_022169	ENSG00000172350	ABCG4	WHITE2	ATP binding cassette subfamily G member 4	protein-coding
47650	chr12	6284901	6285480	+	0	NA	Intergenic	Intergenic	-25142	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
140403	chr2	233086671	233087830	+	0	NA	intron (NM_001017915, intron 2 of 26).2	L2a|LINE|L2	26908	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
20955	chr1	202312351	202312450	+	0	NA	intron (NM_021636, intron 16 of 17)	intron (NM_021636, intron 16 of 17)	29536	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
188405	chr5	154046501	154046730	+	0	NA	intron (NM_001242336, intron 1 of 2)	intron (NM_001242336, intron 1 of 2)	7648	NM_005927	4238		NM_005927	ENSG00000037749	MFAP3	-	microfibril associated protein 3	protein-coding
181608	chr5	43603801	43605530	+	0	NA	intron (NM_182977, intron 1 of 21)	MIRc|SINE|MIR	-1435	NR_073113	100652772		NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
136793	chr2	181490351	181490650	+	0	NA	intron (NM_000885, intron 10 of 27)	(GT)n|Simple_repeat|Simple_repeat	33114	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
225844	chr9	38065321	38066030	+	0	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	3552	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
131266	chr2	96060371	96060730	+	0	NA	Intergenic	Intergenic	-24576	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
139590	chr2	224982421	224984150	+	0	NA	promoter-TSS (NM_001363762)	promoter-TSS (NM_001363762)	-858	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
102235	chr17	75245471	75245630	+	0	NA	intron (NM_001172703, intron 3 of 16)	AluJb|SINE|Alu	16056	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
171934	chr4	876871	877300	+	0	NA	intron (NM_001318134, intron 14 of 24)	CpG	-50956	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
169747	chr3	172520451	172521080	+	0	NA	intron (NM_001190943, intron 1 of 1)	intron (NM_001190943, intron 1 of 1)	2665	NM_001190943	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
184088	chr5	93597871	93598030	+	0	NA	Intergenic	Intergenic	14728	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
197440	chr6	73713871	73714030	+	0	NA	intron (NM_001159588, intron 2 of 31)	intron (NM_001159588, intron 2 of 31)	17747	NM_133493	135228		NM_133493	ENSG00000156535	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
120728	chr19	45343121	45343380	+	0	NA	intron (NM_177417, intron 1 of 12)	intron (NM_177417, intron 1 of 12)	2500	NM_177417	147700		NM_145275	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
179349	chr4	183098501	183099830	+	0	NA	promoter-TSS (NM_024949)	promoter-TSS (NM_024949)	34	NR_024008	152641		NM_153008	ENSG00000251359	WWC2-AS2	C4orf38	WWC2 antisense RNA 2	ncRNA
30673	chr10	80498651	80499380	+	0	NA	intron (NM_001128309, intron 2 of 5)	intron (NM_001128309, intron 2 of 5)	30774	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
237704	chrX	124391021	124391280	+	0	NA	intron (NM_001163279, intron 28 of 31)	intron (NM_001163279, intron 28 of 31)	44587	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
210499	chr7	100174901	100175680	+	0	NA	intron (NM_152742, intron 3 of 9)	intron (NM_152742, intron 3 of 9)	2091	NM_152742	221914		NM_152742	ENSG00000213420	GPC2	-	glypican 2	protein-coding
37037	chr11	12157151	12157500	+	0	NA	intron (NR_144417, intron 2 of 26)	intron (NR_144417, intron 2 of 26)	-4754	NM_001282667	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
12048	chr1	98053351	98054500	+	0	NA	Intergenic	CpG	-4232	NR_046105	400765		NM_001001688	ENSG00000225206	MIR137HG	-	MIR137 host gene	ncRNA
44320	chr11	102393071	102394130	+	0	NA	Intergenic	Intergenic	46226	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
149494	chr21	32433051	32433350	+	0	NA	intron (NM_001320744, intron 1 of 5)	intron (NM_001320744, intron 1 of 5)	20494	NR_135467	59271		NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21	eva-1 homolog C	protein-coding
116697	chr19	18432301	18432500	+	0	NA	intron (NM_032627, intron 10 of 17)	intron (NM_032627, intron 10 of 17)	4909	NM_001253389	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
18684	chr1	167342871	167343130	+	0	NA	intron (NM_001365848, intron 4 of 17)	intron (NM_001365848, intron 4 of 17)	13930	NM_001198783	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
156617	chr22	41577771	41577930	+	0	NA	exon (NM_002676, exon 7 of 8)	exon (NM_002676, exon 7 of 8)	11990	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
159764	chr3	16294121	16294380	+	0	NA	intron (NM_001352980, intron 6 of 9)	AluSq|SINE|Alu	29038	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
186948	chr5	139652851	139653280	+	0	NA	intron (NM_001317205, intron 1 of 2)	intron (NM_001317205, intron 1 of 2)	2076	NM_001317205	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
7074	chr1	32019371	32019900	+	0	NA	intron (NR_073498, intron 1 of 8)	L1ME3F|LINE|L1	5767	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
29840	chr10	72339101	72339300	+	0	NA	intron (NR_157570, intron 5 of 8)	AluJb|SINE|Alu	15719	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
153679	chr22	29071201	29071900	+	0	NA	Intergenic	CpG	-1485	NM_001039570	83999		NM_032045	ENSG00000183762	KREMEN1	ECTD13|KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
141308	chr2	240443721	240443980	+	0	NA	intron (NM_002081, intron 1 of 8)	MIR3|SINE|MIR	8187	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
87152	chr16	69310851	69312330	+	0	NA	intron (NM_013245, intron 1 of 10)	CpG	240	NM_013245	27183		NM_013245	ENSG00000132612	VPS4A	CIMDAG|SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
103828	chr17	79294501	79294700	+	0	NA	intron (NM_001082575, intron 3 of 14)	intron (NM_001082575, intron 3 of 14)	219776	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
10392	chr1	65060951	65061530	+	0	NA	intron (NM_001321853, intron 2 of 26)	AluJb|SINE|Alu	-2732	NR_029516	406893		NR_029516	ENSG00000199135	MIR101-1	MIRN101-1|mir-101-1	microRNA 101-1	ncRNA
158542	chr3	4071671	4071830	+	0	NA	Intergenic	L1PA6|LINE|L1	-231554	NM_001276325	6419		NM_006515	ENSG00000170364	SETMAR	METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
67061	chr14	67819101	67821350	+	0	NA	intron (NM_133509, intron 1 of 10)	MIR|SINE|MIR	446	NM_001321809	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
114833	chr19	13825351	13826630	+	0	NA	intron (NM_023072, intron 11 of 12)	intron (NM_023072, intron 11 of 12)	10369	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
108103	chr18	61975471	61976310	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-82883	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
61349	chr13	50909321	50910680	+	0	NA	5' UTR (NM_024570, exon 1 of 11)	5' UTR (NM_024570, exon 1 of 11)	209	NM_024570	79621		NM_024570	ENSG00000136104	RNASEH2B	AGS2|DLEU8	ribonuclease H2 subunit B	protein-coding
65341	chr14	50233251	50234380	+	0	NA	Intergenic	AluSp|SINE|Alu	-2237	NM_006939	6655		NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
105188	chr17	82295821	82296080	+	0	NA	Intergenic	LTR22A|LTR|ERVK	-3136	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
123265	chr19	53423501	53423700	+	0	NA	intron (NM_001350496, intron 4 of 12)	intron (NM_001350496, intron 4 of 12)	-8374	NR_003148	147804		NM_001010856	ENSG00000293185	TPM3P9	-	tropomyosin 3 pseudogene 9	pseudo
145313	chr20	41065871	41066230	+	0	NA	intron (NM_003286, intron 3 of 20)	intron (NM_003286, intron 3 of 20)	37228	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
24444	chr1	243748721	243749600	+	0	NA	intron (NM_005465, intron 2 of 13)	intron (NM_005465, intron 2 of 13)	94122	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
231104	chr9	129807321	129807980	+	0	NA	intron (NM_001317893, intron 3 of 3)	AluY|SINE|Alu	4466	NM_001317894	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
46500	chr11	128367501	128367950	+	0	NA	Intergenic	AluSz6|SINE|Alu	154585	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
225026	chr9	33145201	33145430	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-21633	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
170479	chr3	185959721	185960380	+	0	NA	non-coding (NR_151491, exon 1 of 4)	non-coding (NR_151491, exon 1 of 4)	107	NR_151491	344887		NR_033752	ENSG00000290862	NMRAL2P	NMRAL1P1	NmrA like redox sensor 2, pseudogene	pseudo
211066	chr7	102470551	102470930	+	0	NA	promoter-TSS (NR_039677)	promoter-TSS (NR_039677)	-729	NR_039677	100616367		NR_039677	ENSG00000284596	MIR4467	-	microRNA 4467	ncRNA
37944	chr11	34356251	34357400	+	0	NA	exon (NM_145804, exon 1 of 17)	exon (NM_145804, exon 1 of 17)	1185	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
109291	chr19	553901	554250	+	0	NA	Intergenic	AluSq4|SINE|Alu	10022	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
31897	chr10	100342171	100342980	+	0	NA	Intergenic	Intergenic	-4658	NM_005063	6319		NM_005063	ENSG00000099194	SCD	FADS5|MSTP008|SCD1|SCDOS|hSCD1	stearoyl-CoA desaturase	protein-coding
150290	chr21	41929551	41929650	+	0	NA	intron (NM_015500, intron 2 of 13)	intron (NM_015500, intron 2 of 13)	-2897	NM_199050	25966		NM_015500	ENSG00000157617	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium dependent domain containing 2	protein-coding
47926	chr12	6786351	6787050	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-2828	NM_000616	920		NM_000616	ENSG00000010610	CD4	CD4mut|IMD79|Leu-3|OKT4D|T4	CD4 molecule	protein-coding
110210	chr19	1748221	1748930	+	0	NA	Intergenic	CpG	-4931	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
100494	chr17	61927021	61928630	+	0	NA	5' UTR (NM_001351695, exon 1 of 25)	5' UTR (NM_001351695, exon 1 of 25)	157	NM_020748	57508		NM_020748	ENSG00000108506	INTS2	INT2|KIAA1287	integrator complex subunit 2	protein-coding
217707	chr8	30138301	30138500	+	0	NA	TTS (NM_001128208)	TTS (NM_001128208)	6265	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
198553	chr6	106570321	106570580	+	0	NA	TTS (NM_001318746)	TTS (NM_001318746)	58595	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
59499	chr13	26721271	26721900	+	0	NA	Intergenic	Intergenic	39201	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
233985	chrX	2713201	2713600	+	0	NA	intron (NR_135623, intron 1 of 10)	(AC)n|Simple_repeat|Simple_repeat	22105	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
86698	chr16	67534951	67535050	+	0	NA	intron (NM_001193523, intron 1 of 21)	AluSz|SINE|Alu	-2462	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
162651	chr3	48846951	48848980	+	0	NA	promoter-TSS (NM_001321982)	promoter-TSS (NM_001321982)	28	NR_109996	100506637		NR_109996	ENSG00000224424	PRKAR2A-AS1	-	PRKAR2A antisense RNA 1	ncRNA
53779	chr12	68811671	68812200	+	0	NA	intron (NM_002392, intron 2 of 10)	AluSx|SINE|Alu	2911	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
159663	chr3	15361471	15362050	+	0	NA	Intergenic	Intergenic	-20380	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
226625	chr9	73178401	73178800	+	0	NA	Intergenic	Intergenic	26735	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
189105	chr5	170328871	170329350	+	0	NA	Intergenic	Intergenic	-2283	NR_026945	257358		NM_001025454	ENSG00000235172	LINC01366	-	long intergenic non-protein coding RNA 1366	ncRNA
93013	chr17	17211321	17211580	+	0	NA	TTS (NM_001353230)	TTS (NM_001353230)	-5117	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
222178	chr8	132985251	132985860	+	0	NA	intron (NM_003235, intron 35 of 47)	HAL1|LINE|L1	61026	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
117135	chr19	19296521	19296780	+	0	NA	intron (NM_172231, intron 8 of 13)	AluY|SINE|Alu	-23349	NM_001001524	53345		NM_203510	ENSG00000213996	TM6SF2	-	transmembrane 6 superfamily member 2	protein-coding
162901	chr3	49400121	49400850	+	0	NA	intron (NM_001313943, intron 1 of 5)	intron (NM_001313943, intron 1 of 5)	11491	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
66038	chr14	58294701	58294900	+	0	NA	intron (NR_029434, intron 1 of 4)	HSMAR1|DNA|TcMar-Mariner	3337	NR_029435	379025		NR_029434	ENSG00000257621	PSMA3-AS1	-	PSMA3 antisense RNA 1	ncRNA
22671	chr1	223818321	223818780	+	0	NA	intron (NM_005426, intron 2 of 18)	intron (NM_005426, intron 2 of 18)	27397	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
5847	chr1	26719451	26719550	+	0	NA	intron (NM_139135, intron 1 of 19)	MIRb|SINE|MIR	23485	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
156789	chr22	41907451	41907550	+	0	NA	TTS (NM_004599)	TTS (NM_004599)	6556	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
140291	chr2	232367571	232367930	+	0	NA	Intergenic	Intergenic	-11001	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
21257	chr1	204384601	204384800	+	0	NA	Intergenic	L2a|LINE|L2	-14981	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
50528	chr12	47882451	47882750	+	0	NA	intron (NM_001374662, intron 1 of 8)	intron (NM_001374662, intron 1 of 8)	22394	NM_001374661	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
8464	chr1	40763851	40764550	+	0	NA	intron (NM_014223, intron 7 of 9)	intron (NM_014223, intron 7 of 9)	6916	NR_029833	407031		NR_029833	ENSG00000207962	MIR30C1	MIRN30C1|mir-30c-1	microRNA 30c-1	ncRNA
202811	chr6	159676271	159676630	+	0	NA	3' UTR (NM_001322819, exon 5 of 5)	3' UTR (NM_001322819, exon 5 of 5)	16791	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
228812	chr9	111945171	111945370	+	0	NA	Intergenic	Intergenic	13170	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
30900	chr10	87043571	87043930	+	0	NA	Intergenic	AluJb|SINE|Alu	23456	NM_001146157	643161		NM_001146157	ENSG00000188100	FAM25A	bA96C23.5	family with sequence similarity 25 member A	protein-coding
186589	chr5	138506271	138506430	+	0	NA	non-coding (NR_157090, exon 10 of 10)	non-coding (NR_157090, exon 10 of 10)	35361	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
22520	chr1	221828451	221828550	+	0	NA	intron (NR_125989, intron 3 of 3)	MER4CL34|LTR|ERV1	12166	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
213162	chr7	131654551	131655030	+	0	NA	Intergenic	Intergenic	-98162	NM_005397	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
90270	chr17	982751	982850	+	0	NA	Intergenic	AluSx|SINE|Alu	-3024	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
98988	chr17	48739851	48739950	+	0	NA	Intergenic	AluJb|SINE|Alu	-11150	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
5545	chr1	25861401	25862750	+	0	NA	3' UTR (NM_178422, exon 3 of 3)	3' UTR (NM_178422, exon 3 of 3)	-2617	NM_001287490	79000		NM_024037	ENSG00000127423	AUNIP	AIBP|C1orf135	aurora kinase A and ninein interacting protein	protein-coding
231565	chr9	131493421	131493950	+	0	NA	intron (NM_001384823, intron 29 of 29)	MER103C|DNA|hAT-Charlie	3199	NR_002914	26786		NR_002914	ENSG00000235284	SNORD62A	RNU62|U62|U62A	small nucleolar RNA, C/D box 62A	snoRNA
202536	chr6	158630821	158631480	+	0	NA	intron (NR_164859, intron 15 of 16)	MIRc|SINE|MIR	13593	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
210234	chr7	99372321	99372580	+	0	NA	Intergenic	AluJr|SINE|Alu	-2280	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
94809	chr17	31308601	31309100	+	0	NA	intron (NM_006495, intron 1 of 1)	intron (NM_006495, intron 1 of 1)	5204	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
221882	chr8	128542121	128542680	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	22279	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
78136	chr15	90392051	90393700	+	0	NA	intron (NM_003870, intron 2 of 37)	AluSx1|SINE|Alu	4633	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
172562	chr4	2416271	2417700	+	0	NA	intron (NM_020972, intron 1 of 12)	CpG	1660	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
92637	chr17	10127171	10127330	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	71356	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
35028	chr11	562521	563650	+	0	NA	intron (NM_001143993, intron 3 of 3)	intron (NM_001143993, intron 3 of 3)	2115	NM_001143994	8045		NM_003475	ENSG00000099849	RASSF7	C11orf13|CFAP88|FAP88|HRAS1|HRC1	Ras association domain family member 7	protein-coding
164532	chr3	63937601	63938350	+	0	NA	intron (NM_001177387, intron 3 of 12)	intron (NM_001177387, intron 3 of 12)	25863	NM_001377406	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
135411	chr2	161078801	161079000	+	0	NA	Intergenic	Intergenic	-58055	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
186660	chr5	138579101	138579700	+	0	NA	Intergenic	Intergenic	-3999	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
17317	chr1	156463171	156463630	+	0	NA	TTS (NM_005920)	TTS (NM_005920)	27287	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
162378	chr3	48034221	48034680	+	0	NA	intron (NM_001384893, intron 1 of 15)	AluSz|SINE|Alu	-18034	NM_001385675	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
98239	chr17	46162471	46163130	+	0	NA	intron (NM_015443, intron 2 of 14).2	L2b|LINE|L2	29982	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
141971	chr20	1328201	1328600	+	0	NA	intron (NR_040047, intron 1 of 2)	L2b|LINE|L2	739	NM_080489	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
165740	chr3	105688901	105689300	+	0	NA	intron (NM_001321806, intron 12 of 17)	L2a|LINE|L2	178491	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
135597	chr2	167292701	167293680	+	0	NA	5' UTR (NM_020981, exon 1 of 5)	5' UTR (NM_020981, exon 1 of 5)	189	NM_020981	8708		NM_020981	ENSG00000172318	B3GALT1	beta3Gal-T1	beta-1,3-galactosyltransferase 1	protein-coding
227232	chr9	89254301	89254500	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-56795	NM_001827	1164		NM_001827	ENSG00000123975	CKS2	CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding
205599	chr7	21898001	21898700	+	0	NA	intron (NM_001277115, intron 79 of 81)	L1M7|LINE|L1	47549	NM_018719	55536		NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
34000	chr10	124685121	124686150	+	0	NA	intron (NM_014661, intron 3 of 4)	intron (NM_014661, intron 3 of 4)	-18393	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
231472	chr9	131335851	131336850	+	0	NA	Intergenic	Intergenic	-37301	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
91120	chr17	3686671	3688180	+	0	NA	intron (NM_002561, intron 9 of 11)	(GCCCCCC)n|Simple_repeat|Simple_repeat	8730	NM_001204519	5026		NM_002561	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X 5	protein-coding
82340	chr16	15948401	15951100	+	0	NA	5' UTR (NM_004996, exon 1 of 31)	5' UTR (NM_004996, exon 1 of 31)	134	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
192930	chr6	27746901	27747130	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-14729	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
85263	chr16	48537151	48537500	+	0	NA	Intergenic	Intergenic	72855	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
207360	chr7	44085221	44085880	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-3010	NM_001284331	27434		NM_013284	ENSG00000122678	POLM	Pol Mu|Tdt-N	DNA polymerase mu	protein-coding
210380	chr7	99693321	99693700	+	0	NA	intron (NM_001256497, intron 14 of 14)	L1P2|LINE|L1	-13514	NM_001190484	1577		NM_000777	ENSG00000106258	CYP3A5	CP35|CYPIIIA5|P450PCN3|PCN3	cytochrome P450 family 3 subfamily A member 5	protein-coding
42859	chr11	73264451	73264550	+	0	NA	promoter-TSS (NM_001277205)	promoter-TSS (NM_001277205)	-5	NM_001277205	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
124859	chr2	8107971	8108130	+	0	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	-131236	NR_015405	339788		NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
43339	chr11	76560071	76560630	+	0	NA	Intergenic	Intergenic	109588	NM_001370189	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
120357	chr19	43594071	43595500	+	0	NA	intron (NM_001007561, intron 2 of 2)	CpG	1350	NM_001007561	126298		NM_001007561	ENSG00000167378	IRGQ	FKSG27|IRGQ1	immunity related GTPase Q	protein-coding
219431	chr8	71845471	71845930	+	0	NA	intron (NR_033651, intron 1 of 2)	MIRb|SINE|MIR	-1288	NM_005098	9242		NM_005098	ENSG00000178860	MSC	ABF-1|ABF1|MYOR|bHLHa22	musculin	protein-coding
69940	chr14	99606671	99606830	+	0	NA	intron (NM_001329411, intron 1 of 8)	intron (NM_001329411, intron 1 of 8)	2212	NM_001329411	84439		NM_032425	ENSG00000182218	HHIPL1	KIAA1822|UNQ9245	HHIP like 1	protein-coding
189564	chr5	175460071	175460250	+	0	NA	Intergenic	Intergenic	-15978	NM_000794	1812		NM_000794	ENSG00000184845	DRD1	D1R|DADR|DRD1A	dopamine receptor D1	protein-coding
70513	chr14	102304471	102305550	+	0	NA	non-coding (NR_148556, exon 1 of 8)	non-coding (NR_148556, exon 1 of 8)	154	NM_014226	5891		NM_014226	ENSG00000080823	MOK	RAGE|RAGE-1|RAGE1|STK30	MOK protein kinase	protein-coding
2755	chr1	10685371	10685530	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	111196	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
201864	chr6	150599051	150600200	+	0	NA	promoter-TSS (NM_001029884)	promoter-TSS (NM_001029884)	-260	NM_001329804	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
172475	chr4	2061171	2062030	+	0	NA	intron (NM_178557, intron 2 of 2)	(GACCTT)n|Simple_repeat|Simple_repeat	2273	NM_178557	339983		NM_178557	ENSG00000185818	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8 like	protein-coding
211098	chr7	102500901	102501900	+	0	NA	intron (NM_001367767, intron 6 of 20)	MIR3|SINE|MIR	16377	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
89167	chr16	88540371	88540530	+	0	NA	Intergenic	Intergenic	-9397	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
188742	chr5	157544221	157545680	+	0	NA	intron (NM_033274, intron 3 of 22)	intron (NM_033274, intron 3 of 22)	30825	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
145019	chr20	37903771	37903930	+	0	NA	intron (NM_080607, intron 1 of 3)	intron (NM_080607, intron 1 of 3)	723	NM_080607	128434		NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
195649	chr6	37878201	37878400	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	58573	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
151970	chr22	19139271	19140180	+	0	NA	exon (NM_022719, exon 5 of 10)	exon (NM_022719, exon 5 of 10)	4926	NR_134304	8220		NM_022719	ENSG00000100056	ESS2	DGCR13|DGCR14|DGS-H|DGS-I|DGSH|DGSI|ES2|ESS-2|Es2el|bis1	ess-2 splicing factor homolog	protein-coding
138863	chr2	216694101	216695000	+	0	NA	exon (NM_000599, exon 1 of 4)	exon (NM_000599, exon 1 of 4)	999	NM_000599	3488		NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
110037	chr19	1461751	1462400	+	0	NA	exon (NM_001351273, exon 13 of 14)	exon (NM_001351273, exon 13 of 14)	9091	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
89369	chr16	88783801	88784840	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	900	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
155161	chr22	37682701	37683100	+	0	NA	Intergenic	AluSz|SINE|Alu	-3443	NM_024313	79159		NM_024313	ENSG00000273899	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
230285	chr9	127936251	127936550	+	0	NA	TTS (NM_001378436)	TTS (NM_001378436)	1454	NR_165632	8818		NM_003863	ENSG00000136908	DPM2	CDG1U	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein-coding
213078	chr7	131090401	131091100	+	0	NA	intron (NR_109852, intron 2 of 5)	L1MC4|LINE|L1	16280	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
181481	chr5	42944151	42944330	+	0	NA	Intergenic	CpG	49093	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
153990	chr22	30390271	30390500	+	0	NA	Intergenic	Intergenic	-2974	NM_001017981	200312		NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
113910	chr19	10695301	10696900	+	0	NA	Intergenic	Intergenic	-5339	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
55692	chr12	107675921	107676850	+	0	NA	Intergenic	AluSp|SINE|Alu	-9347	NM_001317963	11137		NM_007062	ENSG00000136045	PWP1	IEF-SSP-9502|NCLB	PWP1 homolog, endonuclein	protein-coding
134530	chr2	143655971	143656330	+	0	NA	intron (NM_018460, intron 12 of 13)	intron (NM_018460, intron 12 of 13)	-280917	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
148838	chr21	8400301	8402870	+	0	NA	non-coding (NR_003287, exon 3 of 3)	non-coding (NR_003287, exon 3 of 3)	4659	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
14893	chr1	146989701	146989900	+	0	NA	intron (NM_001278141, intron 31 of 36)	intron (NM_001278141, intron 31 of 36)	51255	NM_001278141	149013		NM_001278141	ENSG00000268043	NBPF12	COAS1|KIAA1245	NBPF member 12	protein-coding
14922	chr1	147528101	147528730	+	0	NA	Intergenic	Intergenic	-10540	NR_038423	100289211		NR_038423	ENSG00000278811	LINC00624	-	long intergenic non-protein coding RNA 624	ncRNA
71352	chr14	105469521	105470230	+	0	NA	exon (NM_004689, exon 20 of 21)	exon (NM_004689, exon 20 of 21)	-3070	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
188411	chr5	154075201	154076080	+	0	NA	Intergenic	AluSx|SINE|Alu	36673	NM_005927	4238		NM_005927	ENSG00000037749	MFAP3	-	microfibril associated protein 3	protein-coding
43137	chr11	75277951	75278250	+	0	NA	intron (NM_020251, intron 8 of 14)	intron (NM_020251, intron 8 of 14)	37326	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
99715	chr17	50881201	50881800	+	0	NA	Intergenic	AluJr|SINE|Alu	-13522	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
120851	chr19	45520951	45521450	+	0	NA	intron (NM_003370, intron 3 of 12)	intron (NM_003370, intron 3 of 12)	13721	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
143991	chr20	32970351	32971130	+	0	NA	Intergenic	Intergenic	33693	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
110804	chr19	2463171	2463330	+	0	NA	Intergenic	L1M3e|LINE|L1	-1065	NR_134931	101928602		NR_134931	ENSG00000267201	LINC01775	-	long intergenic non-protein coding RNA 1775	ncRNA
35156	chr11	748571	749130	+	0	NA	intron (NM_006755, intron 1 of 7)	intron (NM_006755, intron 1 of 7)	1386	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
62969	chr13	112290701	112290900	+	0	NA	Intergenic	Intergenic	-17800	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
27194	chr10	28565971	28566130	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	32932	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
233492	chr9	138126301	138127430	+	0	NA	Intergenic	TAR1|Satellite|telo	-23248	NR_027156	643224		NR_027156		TUBBP5	-	tubulin beta pseudogene 5	pseudo
125938	chr2	25170321	25170580	+	0	NA	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-1599	NM_001035256	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
145160	chr20	38843501	38843930	+	0	NA	intron (NM_001172735, intron 2 of 9)	MLT1F1|LTR|ERVL-MaLR	38018	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
99674	chr17	50733021	50733830	+	0	NA	intron (NM_001330330, intron 1 of 10)	AluY|SINE|Alu	13822	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
12583	chr1	108898051	108898380	+	0	NA	intron (NM_013296, intron 5 of 14)	intron (NM_013296, intron 5 of 14)	21230	NM_001321038	29899		NM_013296	ENSG00000121957	GPSM2	CMCS|DFNB82|LGN|PINS	G protein signaling modulator 2	protein-coding
219396	chr8	70577351	70577450	+	0	NA	intron (NM_001317804, intron 11 of 11)	MER52A|LTR|ERV1	30269	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
188597	chr5	157180171	157181090	+	0	NA	promoter-TSS (NM_005546)	promoter-TSS (NM_005546)	-210	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
17119	chr1	156163101	156164400	+	0	NA	intron (NM_001370567, intron 9 of 13)	intron (NM_001370567, intron 9 of 13)	9202	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
207736	chr7	48086621	48087930	+	0	NA	Intergenic	MER41B|LTR|ERV1	-1328	NM_001287426	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
90750	chr17	2040501	2040700	+	0	NA	non-coding (NR_144476, exon 9 of 13)	non-coding (NR_144476, exon 9 of 13)	-1422	NM_080822	124641		NM_080822	ENSG00000262664	OVCA2	-	OVCA2 serine hydrolase domain containing	protein-coding
170446	chr3	185908051	185908380	+	0	NA	Intergenic	L1MB8|LINE|L1	29799	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
231	chr1	875171	875330	+	0	NA	intron (NR_027055, intron 1 of 2)	intron (NR_027055, intron 1 of 2)	1552	NR_027055	284593		NR_027055	ENSG00000230368	FAM41C	-	family with sequence similarity 41 member C	ncRNA
64132	chr14	22860571	22861130	+	0	NA	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-10890	NM_014045	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
60380	chr13	40940701	40941150	+	0	NA	exon (NM_001145353, exon 7 of 8)	exon (NM_001145353, exon 7 of 8)	-19151	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
57087	chr12	121029551	121029650	+	0	NA	intron (NM_003733, intron 3 of 5)	AluY|SINE|Alu	9642	NM_003733	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
147218	chr20	57389911	57390700	+	0	NA	intron (NR_149006, intron 1 of 1)	CpG	-1091	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
10022	chr1	55338151	55338500	+	0	NA	Intergenic	LTR41C|LTR|ERVL	112684	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA
21777	chr1	206926501	206926950	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-4784	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
202317	chr6	157283151	157284030	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	39929	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
164905	chr3	71127301	71128200	+	0	NA	intron (NM_001244810, intron 6 of 20)	MIRc|SINE|MIR	2836	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
166844	chr3	123090771	123090930	+	0	NA	intron (NR_028444, intron 2 of 15)	intron (NR_028444, intron 2 of 15)	23825	NM_006810	10954		NM_006810	ENSG00000065485	PDIA5	PDIR	protein disulfide isomerase family A member 5	protein-coding
132319	chr2	105338971	105339130	+	0	NA	intron (NM_024093, intron 1 of 3)	intron (NM_024093, intron 1 of 3)	1510	NM_001286537	79074		NM_024093	ENSG00000135974	C2orf49	asw	chromosome 2 open reading frame 49	protein-coding
127802	chr2	44358621	44359400	+	0	NA	intron (NM_001171617, intron 1 of 13)	intron (NM_001171617, intron 1 of 13)	739	NM_001042385	9581		NM_006036	ENSG00000138078	PREPL	CMS22	prolyl endopeptidase like	protein-coding
120965	chr19	45709851	45710350	+	0	NA	TTS (NM_001080469)	TTS (NM_001080469)	5178	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
175526	chr4	74444501	74445600	+	0	NA	promoter-TSS (NM_001657)	promoter-TSS (NM_001657)	-86	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
76764	chr15	76988321	76989180	+	0	NA	Intergenic	Intergenic	-5930	NM_001321137	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
212886	chr7	130879471	130880250	+	0	NA	intron (NR_110473, intron 3 of 3)	AluSz|SINE|Alu	-2321	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
223709	chr8	144450321	144450780	+	0	NA	exon (NM_001330618, exon 4 of 4)	exon (NM_001330618, exon 4 of 4)	-6110	NM_013432	4796		NM_013432	ENSG00000160949	TONSL	IKBR|NFKBIL2|SEMDSP	tonsoku like, DNA repair protein	protein-coding
153646	chr22	28794871	28795030	+	0	NA	3' UTR (NM_001079539, exon 6 of 6)	3' UTR (NM_001079539, exon 6 of 6)	5622	NM_001079539	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
56477	chr12	116152351	116152550	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	-3796	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
185863	chr5	132528921	132529450	+	0	NA	Intergenic	Intergenic	14337	NM_000879	3567		NM_000879	ENSG00000113525	IL5	EDF|IL-5|TRF	interleukin 5	protein-coding
164655	chr3	66525001	66525230	+	0	NA	Intergenic	MER89|LTR|ERV1	-23994	NM_001377345	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
33440	chr10	119026851	119026950	+	0	NA	Intergenic	Intergenic	-2814	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
48035	chr12	6956201	6956790	+	0	NA	exon (NM_080549, exon 9 of 16)	exon (NM_080549, exon 9 of 16)	5139	NM_002831	5777		NM_002831	ENSG00000111679	PTPN6	HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1	protein tyrosine phosphatase non-receptor type 6	protein-coding
177762	chr4	122674021	122674480	+	0	NA	intron (NR_104126, intron 10 of 10)	LTR39|LTR|ERV1	-53184	NM_021803	59067		NM_021803	ENSG00000138684	IL21	CVID11|IL-21|Za11	interleukin 21	protein-coding
135742	chr2	169548671	169549130	+	0	NA	intron (NM_001322048, intron 6 of 13)	AluY|SINE|Alu	24965	NM_024622	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
111787	chr19	4444501	4444700	+	0	NA	TTS (NM_001171091)	TTS (NM_001171091)	-1378	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
195676	chr6	38169171	38169900	+	0	NA	3' UTR (NM_001099272, exon 11 of 11)	3' UTR (NM_001099272, exon 11 of 11)	-312061	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
132013	chr2	100640701	100641300	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	37261	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
95739	chr17	38590121	38590380	+	0	NA	intron (NM_025248, intron 1 of 18)	AluSx|SINE|Alu	15702	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
91731	chr17	6655721	6656380	+	0	NA	promoter-TSS (NR_039745)	promoter-TSS (NR_039745)	-541	NR_039745	100616401		NR_039745	ENSG00000264468	MIR4520-1	MIR4520A|hsa-mir-4520-1|mir-4520-1	microRNA 4520-1	ncRNA
41267	chr11	65840601	65841000	+	0	NA	intron (NM_152760, intron 1 of 12)	AluJo|SINE|Alu	6837	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
219368	chr8	70372401	70372700	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	30840	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
225277	chr9	34454901	34455300	+	0	NA	intron (NM_001184942, intron 1 of 5)	L2b|LINE|L2	3470	NM_001184942	203259		NM_147202	ENSG00000164970	FAM219A	C9orf25	family with sequence similarity 219 member A	protein-coding
53259	chr12	62813201	62813450	+	0	NA	intron (NM_020700, intron 2 of 9)	intron (NM_020700, intron 2 of 9)	121825	NM_020700	57460		NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent 1H	protein-coding
63316	chr13	114001101	114002150	+	0	NA	intron (NM_001320822, intron 18 of 23).2	CpG	-27549	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
144299	chr20	34713621	34714500	+	0	NA	TTS (NM_021202)	TTS (NM_021202)	9341	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
130315	chr2	84967671	84967830	+	0	NA	Intergenic	AluSq10|SINE|Alu	-3411	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
23004	chr1	226126671	226127050	+	0	NA	Intergenic	Intergenic	-21143	NR_146443	107985353		NR_146443	ENSG00000234478	ACBD3-AS1	-	ACBD3 antisense RNA 1	ncRNA
212507	chr7	128673001	128673580	+	0	NA	intron (NM_001128926, intron 1 of 4)	intron (NM_001128926, intron 1 of 4)	998	NM_001290255	346653		NM_001012454	ENSG00000205085	GARIN1A	FAM137B|FAM71F2|GARI	golgi associated RAB2 interactor 1A	protein-coding
122969	chr19	50790221	50790680	+	0	NA	promoter-TSS (NM_033068)	promoter-TSS (NM_033068)	35	NM_033068	93650		NM_033068	ENSG00000142513	ACP4	ACPT|AI1J	acid phosphatase 4	protein-coding
202084	chr6	154266771	154267000	+	0	NA	intron (NM_001130700, intron 2 of 11)	intron (NM_001130700, intron 2 of 11)	63196	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
204815	chr7	5684571	5684930	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-4289	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
199428	chr6	116876871	116877230	+	0	NA	promoter-TSS (NM_173560)	promoter-TSS (NM_173560)	-192	NM_173560	222546		NM_173560	ENSG00000185002	RFX6	MTCHRS|MTFS|RFXDC1|dJ955L16.1	regulatory factor X6	protein-coding
19978	chr1	184971671	184972630	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	2358	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
173107	chr4	6372851	6373150	+	0	NA	intron (NM_001206995, intron 5 of 9)	MLT1J2|LTR|ERVL-MaLR	8868	NM_181876	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
148467	chr20	64038201	64039700	+	0	NA	TTS (NM_001348090)	TTS (NM_001348090)	5223	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
158797	chr3	9697921	9698180	+	0	NA	intron (NM_001077525, intron 18 of 18)	intron (NM_001077525, intron 18 of 18)	-5783	NM_001308388	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
118717	chr19	38228551	38228650	+	0	NA	intron (NM_001363579, intron 1 of 11)	CpG	1095	NM_001363579	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
214203	chr7	148667671	148667830	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-30006	NM_001370660	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
16956	chr1	155932721	155933030	+	0	NA	intron (NM_014949, intron 2 of 13)	AluSc|SINE|Alu	1538	NM_014949	22889		NM_014949	ENSG00000132680	KHDC4	BLOM7|KIAA0907|SNORA80EHG	KH domain containing 4, pre-mRNA splicing factor	protein-coding
513	chr1	1206081	1207130	+	0	NA	promoter-TSS (NM_148902)	promoter-TSS (NM_148902)	-13	NM_148901	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
95568	chr17	36937271	36937430	+	0	NA	promoter-TSS (NR_135671)	promoter-TSS (NR_135671)	-125	NM_005568	3975		NM_005568	ENSG00000273706	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
1250	chr1	2294271	2295080	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	57986	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
52445	chr12	55927801	55928600	+	0	NA	promoter-TSS (NM_032345)	promoter-TSS (NM_032345)	-306	NM_032345	84305		NM_032345	ENSG00000170473	PYM1	PYM|WIBG	PYM homolog 1, exon junction complex associated factor	protein-coding
149006	chr21	14526101	14526450	+	0	NA	intron (NM_001286523, intron 1 of 8)	intron (NM_001286523, intron 1 of 8)	20040	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
221750	chr8	127741601	127742250	+	0	NA	3' UTR (NM_002467, exon 3 of 3)	3' UTR (NM_002467, exon 3 of 3)	5694	NM_002467	4609		NM_002467	ENSG00000136997	MYC	MRTL|MYCC|bHLHe39|c-Myc	MYC proto-oncogene, bHLH transcription factor	protein-coding
102287	chr17	75322971	75323780	+	0	NA	intron (NM_203506, intron 3 of 4)	intron (NM_203506, intron 3 of 4)	-33926	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
232289	chr9	134450671	134450830	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	44190	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
81960	chr16	11858471	11858830	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-7108	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
207113	chr7	41940671	41941080	+	0	NA	Intergenic	Intergenic	-237785	NM_002192	3624		NM_002192	ENSG00000122641	INHBA	EDF|FRP	inhibin subunit beta A	protein-coding
234514	chrX	19533371	19533530	+	0	NA	TTS (NM_001024666)	TTS (NM_001024666)	-18189	NM_001001671	389840		NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
118689	chr19	38056001	38056200	+	0	NA	intron (NM_015073, intron 2 of 21)	intron (NM_015073, intron 2 of 21)	-106996	NR_145800	109623473		NR_145800		SNORD152	-	small nucleolar RNA, C/D box 152	snoRNA
74888	chr15	63593171	63593350	+	0	NA	non-coding (NR_046341, exon 16 of 16)	non-coding (NR_046341, exon 16 of 16)	-4127	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
213934	chr7	142632421	142632800	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-33689	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
61147	chr13	48710271	48710630	+	0	NA	3' UTR (NM_001308476, exon 5 of 5)	3' UTR (NM_001308476, exon 5 of 5)	56521	NM_001308476	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
22869	chr1	225653951	225654050	+	0	NA	promoter-TSS (NM_018212)	promoter-TSS (NM_018212)	-877	NM_001377482	55740		NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	ENAH actin regulator	protein-coding
174471	chr4	39813601	39814600	+	0	NA	Intergenic	(TGTGTG)n|Simple_repeat|Simple_repeat	115964	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
38176	chr11	36352501	36353500	+	0	NA	intron (NM_001160167, intron 1 of 8)	AluJo|SINE|Alu	-22985	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
78909	chr15	101159451	101159550	+	0	NA	Intergenic	Intergenic	92548	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
159286	chr3	12973501	12974250	+	0	NA	intron (NM_001134382, intron 1 of 13)	MIR3|SINE|MIR	-6145	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
81995	chr16	11903971	11904550	+	0	NA	intron (NM_001130007, intron 1 of 14)	AluSc|SINE|Alu	11696	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
4756	chr1	23520851	23521200	+	0	NA	promoter-TSS (NR_110799)	promoter-TSS (NR_110799)	-905	NR_110799	101928163		NR_110799		LOC101928163	-	uncharacterized LOC101928163	ncRNA
99927	chr17	57082971	57083600	+	0	NA	Intergenic	AluSx|SINE|Alu	-1961	NM_003488	8165		NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding
35398	chr11	1384471	1384830	+	0	NA	Intergenic	L1ME1|LINE|L1	-5284	NR_046331	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
137184	chr2	191137151	191137650	+	0	NA	intron (NM_003151, intron 3 of 23)	L1PB2|LINE|L1	13594	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
196075	chr6	42269571	42270130	+	0	NA	intron (NM_033502, intron 4 of 17)	intron (NM_033502, intron 4 of 17)	-51989	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
88763	chr16	86703251	86703430	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	18619	NR_135181	101928614		NR_135181	ENSG00000260026	LINC02189	-	long intergenic non-protein coding RNA 2189	ncRNA
104583	chr17	81389921	81390250	+	0	NA	Intergenic	Intergenic	-4703	NR_164137	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
19741	chr1	181159051	181160300	+	0	NA	Intergenic	Intergenic	-14809	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
125074	chr2	9654351	9654700	+	0	NA	Intergenic	Intergenic	-23528	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
118560	chr19	36152371	36152730	+	0	NA	promoter-TSS (NM_001864)	promoter-TSS (NM_001864)	-103	NM_001864	1346		NM_001864	ENSG00000161281	COX7A1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit 7A1	protein-coding
208061	chr7	56078051	56078830	+	0	NA	exon (NM_015411, exon 8 of 9)	exon (NM_015411, exon 8 of 9)	14154	NM_001366649	25870		NM_015411	ENSG00000129103	SUMF2	pFGE	sulfatase modifying factor 2	protein-coding
36462	chr11	5712471	5712800	+	0	NA	Intergenic	Intergenic	22845	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
223631	chr8	144330021	144330530	+	0	NA	TTS (NM_031309)	TTS (NM_031309)	-3423	NM_012079	8694		NM_012079	ENSG00000185000	DGAT1	ARAT|ARGP1|DGAT|DIAR7	diacylglycerol O-acyltransferase 1	protein-coding
222062	chr8	130313571	130314380	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-17442	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
72598	chr15	35656221	35656480	+	0	NA	intron (NR_038251, intron 1 of 2)	SVA_F|Retroposon|SVA	110155	NR_038251	100507466		NR_038251		DPH6-DT	ATPBD4-AS1|DPH6-AS1	DPH6 divergent transcript	ncRNA
100006	chr17	57874171	57874980	+	0	NA	intron (NM_001292025, intron 3 of 10)	intron (NM_001292025, intron 3 of 10)	-24531	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
54711	chr12	93447601	93448280	+	0	NA	Intergenic	Intergenic	-5993	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
151699	chr22	17281421	17281750	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-14852	NR_038398	27442		NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3	ncRNA
74181	chr15	55439701	55440050	+	0	NA	intron (NM_001033560, intron 6 of 8)	MLT1A|LTR|ERVL-MaLR	-31365	NM_001204450	9236		NM_004748	ENSG00000260916	CCPG1	CPR8	cell cycle progression 1	protein-coding
111619	chr19	4117071	4117230	+	0	NA	intron (NM_030662, intron 2 of 10)	intron (NM_030662, intron 2 of 10)	6972	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
26145	chr10	13847251	13847700	+	0	NA	intron (NM_018027, intron 3 of 24)	intron (NM_018027, intron 3 of 24)	124421	NM_001318337	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
82019	chr16	11949671	11949830	+	0	NA	intron (NM_001355514, intron 3 of 8)	intron (NM_001355514, intron 3 of 8)	14688	NM_001355514	729978		NM_001355514	ENSG00000234719	NPIPB2	-	nuclear pore complex interacting protein family member B2	protein-coding
27002	chr10	26809871	26810130	+	0	NA	intron (NR_145410, intron 2 of 11)	MER21C|LTR|ERVL	50958	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
194064	chr6	31863711	31865080	+	0	NA	intron (NM_001178045, intron 20 of 20).5	intron (NM_001178045, intron 20 of 20).5	-1574	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
38415	chr11	45026051	45026400	+	0	NA	Intergenic	Intergenic	52323	NR_026681	221122		NR_026681	ENSG00000254654	LINC02685	-	long intergenic non-protein coding RNA 2685	ncRNA
188579	chr5	157152521	157153430	+	0	NA	Intergenic	AluJo|SINE|Alu	-10110	NM_004270	9443		NM_004270	ENSG00000155868	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
126463	chr2	28357851	28358350	+	0	NA	Intergenic	Intergenic	-34758	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
152241	chr22	20194171	20194530	+	0	NA	Intergenic	Intergenic	10568	NR_038460	284865		NR_038460	ENSG00000249923	LINC02891	lnc-RTN4R-1	long intergenic non-protein coding RNA 2891	ncRNA
127787	chr2	44216171	44216930	+	0	NA	intron (NM_002706, intron 3 of 5)	L2c|LINE|L2	47675	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
78225	chr15	90650051	90650750	+	0	NA	intron (NR_120372, intron 2 of 3)	HAL1b|LINE|L1	-9834	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
13933	chr1	120175971	120177130	+	0	NA	promoter-TSS (NM_004892)	promoter-TSS (NM_004892)	-30	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
92131	chr17	7621671	7622080	+	0	NA	intron (NM_001289114, intron 1 of 7)	AluSz|SINE|Alu	5946	NM_133491	112483		NM_133491	ENSG00000141504	SAT2	SSAT-2|SSAT2	spermidine/spermine N1-acetyltransferase family member 2	protein-coding
183642	chr5	80245771	80246500	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	9913	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
57439	chr12	121897301	121897800	+	0	NA	intron (NR_048555, intron 2 of 4)	AluSx1|SINE|Alu	8760	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
103565	chr17	78679251	78679680	+	0	NA	intron (NM_001365037, intron 12 of 13)	intron (NM_001365037, intron 12 of 13)	37567	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
142240	chr20	3121021	3121880	+	0	NA	exon (NM_014948, exon 3 of 5)	exon (NM_014948, exon 3 of 5)	14539	NR_038395	100134015		NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
217750	chr8	30801351	30801650	+	0	NA	intron (NM_001009552, intron 1 of 6)	AluY|SINE|Alu	11318	NM_001009552	5516		NM_004156	ENSG00000104695	PPP2CB	PP2Abeta|PP2CB	protein phosphatase 2 catalytic subunit beta	protein-coding
63788	chr14	21289071	21289250	+	0	NA	intron (NM_020366, intron 2 of 24)	AluY|SINE|Alu	9077	NM_020366	57096		NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	RPGR interacting protein 1	protein-coding
129591	chr2	70081971	70082530	+	0	NA	intron (NR_033872, intron 3 of 10)	intron (NR_033872, intron 3 of 10)	4765	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
116646	chr19	18320971	18321130	+	0	NA	intron (NM_012321, intron 1 of 4)	intron (NM_012321, intron 1 of 4)	2026	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
92838	chr17	16211921	16212180	+	0	NA	intron (NM_006311, intron 1 of 45)	AluSg|SINE|Alu	3484	NM_006311	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
93358	chr17	18233371	18233530	+	0	NA	intron (NM_004140, intron 4 of 22)	intron (NM_004140, intron 4 of 22)	7815	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
177598	chr4	120924051	120924150	+	0	NA	Intergenic	Intergenic	-1374	NM_001300823	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
69442	chr14	94163871	94164230	+	0	NA	Intergenic	Intergenic	-10262	NM_020958	57718		NM_020958	ENSG00000119698	PPP4R4	CFAP14|KIAA1622|PP4R4	protein phosphatase 4 regulatory subunit 4	protein-coding
216140	chr8	11467401	11468400	+	0	NA	Intergenic	Intergenic	-1147	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
161503	chr3	42547221	42547780	+	0	NA	TTS (NM_001201584)	TTS (NM_001201584)	-14894	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
62747	chr13	106566151	106566250	+	0	NA	intron (NM_018011, intron 1 of 3)	intron (NM_018011, intron 1 of 3)	1937	NM_018011	55082		NM_018011	ENSG00000134884	ARGLU1	-	arginine and glutamate rich 1	protein-coding
89661	chr16	89360771	89361580	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	40723	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
63123	chr13	113371251	113371750	+	0	NA	Intergenic	Intergenic	-7352	NM_001286733	79774		NM_024719	ENSG00000139835	GRTP1	TBC1D6	growth hormone regulated TBC protein 1	protein-coding
18643	chr1	166884021	166884550	+	0	NA	Intergenic	CpG	-8021	NM_053053	117143		NM_053053	ENSG00000152382	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
84604	chr16	30669621	30670080	+	0	NA	3' UTR (NM_001105079, exon 18 of 18)	3' UTR (NM_001105079, exon 18 of 18)	11419	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
220011	chr8	90501401	90501600	+	0	NA	Intergenic	Intergenic	104563	NR_104062	101937451		NR_104062	ENSG00000253799	LINC01030	-	long intergenic non-protein coding RNA 1030	ncRNA
133864	chr2	128371501	128371700	+	0	NA	Intergenic	Intergenic	-52732	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
116990	chr19	18890471	18890630	+	0	NA	intron (NM_021267, intron 2 of 7)	AluJr|SINE|Alu	5608	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
156910	chr22	42269221	42270000	+	0	NA	promoter-TSS (NR_036498)	promoter-TSS (NR_036498)	-143	NR_036498	388906		NR_036498		OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
97006	chr17	42293321	42293600	+	0	NA	intron (NM_003152, intron 5 of 19)	AluSx1|SINE|Alu	5404	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
30402	chr10	78541801	78542000	+	0	NA	Intergenic	Intergenic	274558	NR_073447	414243		NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
8359	chr1	40290301	40290500	+	0	NA	intron (NM_005857, intron 8 of 9)	intron (NM_005857, intron 8 of 9)	26886	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
51392	chr12	51949951	51950300	+	0	NA	Intergenic	Intergenic	-1574	NM_020328	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
129417	chr2	69305751	69306150	+	0	NA	Intergenic	Intergenic	81277	NM_002056	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
48258	chr12	8544151	8544630	+	0	NA	Intergenic	MER21-int|LTR|ERVL	-3485	NM_014358	26253		NM_014358	ENSG00000166523	CLEC4E	CLECSF9|MINCLE	C-type lectin domain family 4 member E	protein-coding
25539	chr10	7405521	7406250	+	0	NA	intron (NM_001029880, intron 1 of 20)	intron (NM_001029880, intron 1 of 20)	3456	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
160606	chr3	31361421	31361680	+	0	NA	Intergenic	Intergenic	-171375	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
114443	chr19	12698901	12699980	+	0	NA	non-coding (NR_167979, exon 25 of 25)	non-coding (NR_167979, exon 25 of 25)	-2809	NM_032301	84261		NM_032301	ENSG00000132004	FBXW9	Fbw9|MEC-15	F-box and WD repeat domain containing 9	protein-coding
21531	chr1	205814471	205814850	+	0	NA	Intergenic	Intergenic	-1462	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
115045	chr19	14134101	14134300	+	0	NA	intron (NM_018154, intron 1 of 3)	intron (NM_018154, intron 1 of 3)	2389	NM_018154	55723		NM_018154	ENSG00000105011	ASF1B	CIA-II	anti-silencing function 1B histone chaperone	protein-coding
124666	chr2	3221951	3222050	+	0	NA	intron (NM_001330531, intron 3 of 7)	intron (NM_001330531, intron 3 of 7)	-95974	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
75652	chr15	67539421	67539850	+	0	NA	Intergenic	L1MB2|LINE|L1	-3068	NM_002757	5607		NM_002757	ENSG00000137764	MAP2K5	HsT17454|MAPKK5|MEK5|PRKMK5	mitogen-activated protein kinase kinase 5	protein-coding
165518	chr3	100338801	100339000	+	0	NA	intron (NM_020202, intron 1 of 9)	MER20|DNA|hAT-Charlie	4143	NM_020202	56954		NM_020202	ENSG00000114021	NIT2	HEL-S-8a	nitrilase family member 2	protein-coding
25768	chr10	11139871	11140030	+	0	NA	intron (NM_001326345, intron 1 of 13)	intron (NM_001326345, intron 1 of 13)	-24931	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
224160	chr9	4970971	4971650	+	0	NA	Intergenic	L2|LINE|L2	-13776	NM_001322195	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
127619	chr2	43051351	43051650	+	0	NA	Intergenic	Intergenic	-11957	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
24483	chr1	244272921	244273650	+	0	NA	Intergenic	Intergenic	-79350	NM_001276348	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
77740	chr15	85742451	85742950	+	0	NA	intron (NM_007200, intron 35 of 36)	intron (NM_007200, intron 35 of 36)	16025	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
146911	chr20	51562151	51563030	+	0	NA	exon (NM_001136021, exon 1 of 11)	exon (NM_001136021, exon 1 of 11)	249	NM_001258294	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
103472	chr17	78345801	78346000	+	0	NA	Intergenic	MIRb|SINE|MIR	13767	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
160956	chr3	36957821	36958080	+	0	NA	Intergenic	Intergenic	-12896	NM_001329998	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
236412	chrX	71251651	71251950	+	0	NA	intron (NM_201599, intron 2 of 24)	intron (NM_201599, intron 2 of 24)	2340	NM_201599	9203		NM_005096	ENSG00000147130	ZMYM3	DXS6673E|MYM|XFIM|XLID112|ZNF198L2|ZNF261	zinc finger MYM-type containing 3	protein-coding
37983	chr11	35012151	35013150	+	0	NA	Intergenic	Intergenic	70813	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
184125	chr5	94610871	94611230	+	0	NA	intron (NM_001385719, intron 2 of 6)	intron (NM_001385719, intron 2 of 6)	7075	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
120300	chr19	43471951	43472580	+	0	NA	Intergenic	AluJr|SINE|Alu	-6657	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
66775	chr14	64552951	64553050	+	0	NA	intron (NM_172365, intron 3 of 11)	AluJb|SINE|Alu	3039	NM_172365	145376		NM_172365	ENSG00000165807	PPP1R36	C14orf50	protein phosphatase 1 regulatory subunit 36	protein-coding
78672	chr15	95292071	95292230	+	0	NA	intron (NR_034095, intron 1 of 3)	intron (NR_034095, intron 1 of 3)	34950	NR_034095	400456		NR_034095	ENSG00000248441	LETR1	LINC01197	lymphatic endothelial transcriptional regulator lncRNA 1	ncRNA
91577	chr17	5196551	5197580	+	0	NA	intron (NR_152840, intron 1 of 5)	AluSx|SINE|Alu	5058	NR_152840	100130950		NR_034082	ENSG00000261879	ZNF594-DT	-	ZNF594 divergent transcript	ncRNA
52558	chr12	56150451	56150750	+	0	NA	Intergenic	Intergenic	-1987	NM_001199629	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
222236	chr8	133123751	133124050	+	0	NA	intron (NM_003235, intron 45 of 47)	MIRb|SINE|MIR	-21298	NM_001045557	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
103104	chr17	77351171	77351530	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	-21987	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
20550	chr1	198708271	198708630	+	0	NA	intron (NM_002838, intron 10 of 32)	intron (NM_002838, intron 10 of 32)	69410	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
66614	chr14	63717421	63718130	+	0	NA	intron (NM_030791, intron 1 of 2)	L1MEc|LINE|L1	10290	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
157121	chr22	42650951	42651580	+	0	NA	Intergenic	Intergenic	-1873	NM_000398	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
192637	chr6	26141601	26141800	+	0	NA	Intergenic	LTR105_Mam|LTR|ERVL	-14629	NM_005321	3008		NM_005321	ENSG00000168298	H1-4	H1.4|H1E|H1F4|H1s-4|HIST1H1E|RMNS|dJ221C16.5	H1.4 linker histone, cluster member	protein-coding
147120	chr20	54062821	54063250	+	0	NA	intron (NM_001366296, intron 1 of 10)	intron (NM_001366296, intron 1 of 10)	-4015	NM_001323347	8537		NM_003657	ENSG00000064787	BCAS1	AIBC1|NABC1|PMES-2	brain enriched myelin associated protein 1	protein-coding
189913	chr5	177366001	177366500	+	0	NA	exon (NM_001366618, exon 3 of 14)	exon (NM_001366618, exon 3 of 14)	8326	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
31698	chr10	97638621	97639550	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1601	NM_018425	55361		NM_018425	ENSG00000155252	PI4K2A	NEDMSB|PI4KII|PIK42A	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
219841	chr8	81836971	81837330	+	0	NA	intron (NR_145472, intron 2 of 6)	L2a|LINE|L2	5035	NR_145473	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
231828	chr9	132581701	132582930	+	0	NA	promoter-TSS (NM_020064)	promoter-TSS (NM_020064)	-291	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
124698	chr2	3576971	3577750	+	0	NA	intron (NM_001011, intron 4 of 6)	intron (NM_001011, intron 4 of 6)	2100	NM_001011	6201		NM_001011	ENSG00000171863	RPS7	DBA8|S7|eS7	ribosomal protein S7	protein-coding
23192	chr1	226959901	226960380	+	0	NA	intron (NM_020247, intron 1 of 14)	(GTG)n|Simple_repeat|Simple_repeat	19846	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
178261	chr4	143557801	143558250	+	0	NA	TTS (NM_003601)	TTS (NM_003601)	-1447	NR_003675	441046		NM_001011539	ENSG00000251600	GUSBP5	GYPELOC441046	GUSB pseudogene 5	pseudo
189282	chr5	172105151	172105450	+	0	NA	intron (NM_005990, intron 7 of 18)	intron (NM_005990, intron 7 of 18)	82924	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
164360	chr3	58102251	58102550	+	0	NA	intron (NM_001164319, intron 9 of 44)	intron (NM_001164319, intron 9 of 44)	68235	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
151677	chr22	17106501	17107580	+	0	NA	intron (NM_014339, intron 11 of 12)	intron (NM_014339, intron 11 of 12)	14320	NM_031890	27439		NM_031890	ENSG00000183307	TMEM121B	CECR6	transmembrane protein 121B	protein-coding
45278	chr11	118029321	118029650	+	0	NA	intron (NM_001354434, intron 3 of 5)	LTR50|LTR|ERVL	43091	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
172330	chr4	1689101	1689980	+	0	NA	Intergenic	AluY|SINE|Alu	-5227	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
207532	chr7	44817671	44818080	+	0	NA	Intergenic	AluSp|SINE|Alu	21194	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
225299	chr9	34547871	34548250	+	0	NA	Intergenic	Intergenic	-19952	NR_024369	415056		NR_024369	ENSG00000237159	CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
11528	chr1	90990451	90991000	+	0	NA	intron (NM_032186, intron 1 of 3)	L1MEc|LINE|L1	30783	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
70704	chr14	103279021	103279880	+	0	NA	Intergenic	CpG	-37834	NR_135269	105378183		NR_135269		LOC105378183	-	uncharacterized LOC105378183	ncRNA
22177	chr1	212288101	212288900	+	0	NA	intron (NM_006243, intron 1 of 12)	intron (NM_006243, intron 1 of 12)	3090	NM_006243	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
86897	chr16	68031951	68032250	+	0	NA	intron (NM_001271763, intron 2 of 14)	intron (NM_001271763, intron 2 of 14)	8816	NM_017803	54920		NM_017803	ENSG00000167264	DUS2	DUS2L|SMM1|URLC8	dihydrouridine synthase 2	protein-coding
40829	chr11	64989151	64989450	+	0	NA	exon (NM_001300808, exon 2 of 2)	exon (NM_001300808, exon 2 of 2)	977	NM_001300807	116071		NM_138456	ENSG00000168062	BATF2	SARI	basic leucine zipper ATF-like transcription factor 2	protein-coding
130426	chr2	85351451	85352130	+	0	NA	exon (NM_017750, exon 2 of 11)	exon (NM_017750, exon 2 of 11)	2738	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
105453	chr17	83013001	83013200	+	0	NA	intron (NR_135465, intron 5 of 13)	intron (NR_135465, intron 5 of 13)	-6103	NM_001320743	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
108915	chr18	79440671	79441030	+	0	NA	intron (NM_172389, intron 3 of 9)	intron (NM_172389, intron 3 of 9)	40551	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
144277	chr20	34620671	34621430	+	0	NA	intron (NM_080476, intron 6 of 11)	intron (NM_080476, intron 6 of 11)	56042	NM_080476	128869		NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1|GPIBD21|NEDBSS|PIG-U	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
104055	chr17	80146001	80148130	+	0	NA	promoter-TSS (NM_014740)	promoter-TSS (NM_014740)	63	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
158779	chr3	9420851	9421550	+	0	NA	intron (NM_001349451, intron 1 of 25)	MIR3|SINE|MIR	23585	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
175722	chr4	77586671	77587380	+	0	NA	intron (NM_006419, intron 1 of 4)	intron (NM_006419, intron 1 of 4)	-18795	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
9727	chr1	53181901	53182600	+	0	NA	Intergenic	Intergenic	-14574	NM_001330589	1376		NM_000098	ENSG00000157184	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
93196	chr17	17813651	17814100	+	0	NA	promoter-TSS (NR_030361)	promoter-TSS (NR_030361)	56	NR_030361	693120		NR_030361	ENSG00000207839	MIR33B	MIRN33B|hsa-mir-33b|mir-33b	microRNA 33b	ncRNA
2440	chr1	9624271	9624430	+	0	NA	Intergenic	Intergenic	-27381	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
187823	chr5	146795471	146795630	+	0	NA	intron (NM_001271899, intron 2 of 9)	L1MA9|LINE|L1	83207	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
101985	chr17	74756701	74757100	+	0	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	8272	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
193554	chr6	30619551	30619650	+	0	NA	exon (NM_014046, exon 2 of 7).5	exon (NM_014046, exon 2 of 7).5	1760	NM_014046	28973		NM_014046	ENSG00000204568	MRPS18B	C6orf14|HSPC183|HumanS18a|MRP-S18-2|MRPS18-2|PTD017|S18amt|mS40	mitochondrial ribosomal protein S18B	protein-coding
174519	chr4	40057601	40058650	+	0	NA	promoter-TSS (NR_027277)	promoter-TSS (NR_027277)	-926	NR_027277	344967		NR_027277	ENSG00000293349	LOC344967	ACOT7L|BACHL	acyl-CoA thioesterase 7 pseudogene	pseudo
142573	chr20	5448471	5448730	+	0	NA	Intergenic	Intergenic	-2852	NR_038240	100507629		NR_038239	ENSG00000226995	LINC00658	-	long intergenic non-protein coding RNA 658	ncRNA
556	chr1	1248351	1248450	+	0	NA	Intergenic	Intergenic	-1678	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
111802	chr19	4455421	4455800	+	0	NA	promoter-TSS (NM_001171091)	promoter-TSS (NM_001171091)	-309	NM_001171091	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
61010	chr13	48091951	48092250	+	0	NA	intron (NM_001270629, intron 1 of 6)	L2a|LINE|L2	3004	NM_014166	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
3790	chr1	16706451	16706650	+	0	NA	intron (NR_026567, intron 4 of 10)	intron (NR_026567, intron 4 of 10)	13607	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
73299	chr15	41877521	41877780	+	0	NA	intron (NM_016642, intron 17 of 67)	MER91A|DNA|hAT-Tip100	-11099	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
232853	chr9	136789121	136789580	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-1994	NM_032928	85014		NM_032928	ENSG00000244187	TMEM141	-	transmembrane protein 141	protein-coding
186967	chr5	139671601	139671950	+	0	NA	intron (NM_001317203, intron 2 of 3)	intron (NM_001317203, intron 2 of 3)	-3668	NM_001317208	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
177566	chr4	119363321	119363980	+	0	NA	Intergenic	Intergenic	-41512	NM_000134	2169		NM_000134	ENSG00000145384	FABP2	FABPI|I-FABP	fatty acid binding protein 2	protein-coding
135546	chr2	162732101	162732900	+	0	NA	intron (NM_173162, intron 2 of 7)	intron (NM_173162, intron 2 of 7)	-36436	NR_110258	101929570		NR_110258	ENSG00000237750	KCNH7-AS1	-	KCNH7 antisense RNA 1	ncRNA
172284	chr4	1552251	1552550	+	0	NA	Intergenic	(GCCCAG)n|Simple_repeat|Simple_repeat	131591	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
29515	chr10	70715751	70716050	+	0	NA	intron (NM_139155, intron 4 of 21)	intron (NM_139155, intron 4 of 21)	43394	NM_080722	140766		NM_080722	ENSG00000138316	ADAMTS14	-	ADAM metallopeptidase with thrombospondin type 1 motif 14	protein-coding
58338	chr12	131530321	131530980	+	0	NA	Intergenic	MER90a|LTR|ERV1	117471	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
134362	chr2	136207121	136207680	+	0	NA	Intergenic	Intergenic	-89251	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
230474	chr9	128216471	128217500	+	0	NA	intron (NM_001374269, intron 1 of 21)	intron (NM_001374269, intron 1 of 21)	-12763	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
170836	chr3	190301621	190301940	+	0	NA	intron (NM_001378493, intron 1 of 7)	L2a|LINE|L2	11419	NM_001378492	10686		NM_006580	ENSG00000113946	CLDN16	HOMG3|PCLN1	claudin 16	protein-coding
36995	chr11	11895671	11895830	+	0	NA	intron (NM_001372100, intron 5 of 28)	intron (NM_001372100, intron 5 of 28)	53778	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
171109	chr3	195508401	195508800	+	0	NA	Intergenic	L2a|LINE|L2	34725	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
207655	chr7	45079371	45080350	+	0	NA	TTS (NM_001146334)	TTS (NM_001146334)	9109	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
166434	chr3	113837871	113838030	+	0	NA	promoter-TSS (NM_017577)	promoter-TSS (NM_017577)	-838	NM_017577	54762		NM_017577	ENSG00000178075	GRAMD1C	-	GRAM domain containing 1C	protein-coding
202732	chr6	158972301	158972880	+	0	NA	TTS (NM_001346418)	TTS (NM_001346418)	27597	NR_144434	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
228731	chr9	109319071	109319430	+	0	NA	intron (NM_019114, intron 1 of 25)	CpG	1714	NM_018424	54566		NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2|LULU2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
51022	chr12	49740651	49743500	+	0	NA	5' UTR (NM_001098576, exon 1 of 10)	5' UTR (NM_001098576, exon 1 of 10)	266	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
81462	chr16	8893071	8893230	+	0	NA	non-coding (NR_135826, exon 31 of 31)	non-coding (NR_135826, exon 31 of 31)	-24138	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
170511	chr3	186484721	186484800	+	0	NA	intron (NR_033844, intron 2 of 7)	L1MA2|LINE|L1	8901	NR_033844	253573		NR_033844	ENSG00000224406	LINC02052	-	long intergenic non-protein coding RNA 2052	ncRNA
75725	chr15	68196671	68197030	+	0	NA	intron (NR_104583, intron 1 of 1)	intron (NR_104583, intron 1 of 1)	8482	NM_033429	91860		NM_033429	ENSG00000129007	CALML4	NY-BR-20	calmodulin like 4	protein-coding
1476	chr1	2695651	2695950	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-62784	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
187241	chr5	141370021	141370450	+	0	NA	promoter-TSS (NM_018924)	promoter-TSS (NM_018924)	-7	NM_018924	56102		NM_018924	ENSG00000262209	PCDHGB3	PCDH-GAMMA-B3	protocadherin gamma subfamily B, 3	protein-coding
172766	chr4	2914621	2915100	+	0	NA	intron (NM_001354756, intron 13 of 15)	intron (NM_001354756, intron 13 of 15)	19377	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
6738	chr1	30712451	30712750	+	0	NA	3' UTR (NM_002379, exon 8 of 8)	3' UTR (NM_002379, exon 8 of 8)	-6172	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
164736	chr3	69014821	69015480	+	0	NA	Intergenic	MER41A|LTR|ERV1	-1466	NM_001278689	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
147773	chr20	62548421	62548880	+	0	NA	intron (NR_033263, intron 1 of 6)	intron (NR_033263, intron 1 of 6)	-1803	NM_178463	128826		NM_178463	ENSG00000174407	MIR1-1HG	C20orf166|MIR133A2HG	MIR1-1 host gene	ncRNA
36960	chr11	11235751	11235850	+	0	NA	Intergenic	AluYa5|SINE|Alu	117450	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
139455	chr2	223895751	223896050	+	0	NA	intron (NM_020830, intron 6 of 11)	AluSx1|SINE|Alu	49435	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
87911	chr16	79091121	79091380	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	509487	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
217882	chr8	37868171	37868530	+	0	NA	intron (NM_025151, intron 4 of 4)	AluSq2|SINE|Alu	-18489	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
41494	chr11	66246851	66246950	+	0	NA	Intergenic	L2b|LINE|L2	-10394	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
207905	chr7	50497151	50497250	+	0	NA	intron (NM_001082971, intron 8 of 14)	intron (NM_001082971, intron 8 of 14)	-34559	NR_033845	100129427		NR_033845	ENSG00000226122	DDC-AS1	-	DDC antisense RNA 1	ncRNA
163256	chr3	50289321	50289580	+	0	NA	exon (NM_006764, exon 7 of 12)	exon (NM_006764, exon 7 of 12)	2979	NM_006764	7866		NM_006764	ENSG00000214706	IFRD2	IFNRP|SKMc15|SM15	interferon related developmental regulator 2	protein-coding
200862	chr6	138592921	138593580	+	0	NA	Intergenic	Intergenic	-20681	NM_020464	57224		NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
154245	chr22	31610801	31611000	+	0	NA	intron (NM_001007467, intron 22 of 32)	L2b|LINE|L2	10631	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
113789	chr19	10556151	10556880	+	0	NA	intron (NM_023008, intron 16 of 18)	AluSz6|SINE|Alu	4393	NR_031603	100302226		NR_031603	ENSG00000221410	MIR1238	MIRN1238|hsa-mir-1238	microRNA 1238	ncRNA
79459	chr16	730221	730980	+	0	NA	TTS (NM_032304)	TTS (NM_032304)	3494	NM_032304	84264		NM_032304	ENSG00000103253	HAGHL	-	hydroxyacylglutathione hydrolase like	protein-coding
9775	chr1	53473671	53473830	+	0	NA	Intergenic	L1MD2|LINE|L1	14351	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
122806	chr19	50375071	50375300	+	0	NA	Intergenic	AluSp|SINE|Alu	-1272	NM_001256647	7376		NM_007121	ENSG00000131408	NR1H2	LXR-b|LXRB|NER|NER-I|RIP15|UNR	nuclear receptor subfamily 1 group H member 2	protein-coding
22379	chr1	218339301	218339550	+	0	NA	Intergenic	Intergenic	-5859	NR_138148	7042		NM_003238	ENSG00000092969	TGFB2	G-TSF|LDS4|TGF-beta2	transforming growth factor beta 2	protein-coding
205320	chr7	12322401	12322680	+	0	NA	Intergenic	Intergenic	81325	NM_001135924	221806		NM_174949	ENSG00000146530	VWDE	-	von Willebrand factor D and EGF domains	protein-coding
92720	chr17	14207501	14207900	+	0	NA	3' UTR (NM_001303, exon 7 of 7)	3' UTR (NM_001303, exon 7 of 7)	29162	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
153697	chr22	29266551	29266650	+	0	NA	intron (NR_138044, intron 2 of 6)	intron (NR_138044, intron 2 of 6)	1381	NR_138044	25807		NM_012265	ENSG00000100263	RHBDD3	C22orf3|HS984G1A|PTAG	rhomboid domain containing 3	protein-coding
113617	chr19	10315501	10316800	+	0	NA	promoter-TSS (NM_001031734)	promoter-TSS (NM_001031734)	-135	NM_001031734	112812		NM_080665	ENSG00000267673	FDX2	FDX1L|MEOAL	ferredoxin 2	protein-coding
74687	chr15	62122271	62122500	+	0	NA	Intergenic	Intergenic	42900	NM_001007595	388125		NM_001007595	ENSG00000205502	C2CD4B	FAM148B|NLF2	C2 calcium dependent domain containing 4B	protein-coding
116679	chr19	18407851	18408780	+	0	NA	Intergenic	Intergenic	-10693	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
66255	chr14	61358221	61358680	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	37007	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
12052	chr1	98323701	98324500	+	0	NA	Intergenic	MLT2F|LTR|ERVL	113389	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
148448	chr20	64001651	64002150	+	0	NA	intron (NM_012469, intron 9 of 20)	intron (NM_012469, intron 9 of 20)	20768	NM_012469	24148		NM_012469	ENSG00000101161	PRPF6	ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6	pre-mRNA processing factor 6	protein-coding
141645	chr2	241732071	241733100	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2045	NM_001287249	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
191015	chr6	3089971	3090330	+	0	NA	intron (NM_001354931, intron 6 of 9)	intron (NM_001354931, intron 6 of 9)	21656	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
211232	chr7	102641871	102642330	+	0	NA	intron (NM_032959, intron 4 of 8)	AluSg|SINE|Alu	691	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
2304	chr1	8993251	8993550	+	0	NA	Intergenic	Intergenic	32945	NM_207420	155184		NM_207420	ENSG00000197241	SLC2A7	GLUT-7|GLUT7|hGLUT7	solute carrier family 2 member 7	protein-coding
29134	chr10	68550601	68551230	+	0	NA	Intergenic	Intergenic	-9422	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
28268	chr10	45803071	45803230	+	0	NA	Intergenic	L2a|LINE|L2	14174	NM_001351234	643479		NM_001351234	ENSG00000290779	FAM25EP	FAM25D|FAM25E	family with sequence similarity 25 member E	pseudo
45758	chr11	119222321	119222830	+	0	NA	intron (NM_005188, intron 1 of 15)	intron (NM_005188, intron 1 of 15)	16236	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
144026	chr20	33489321	33490880	+	0	NA	promoter-TSS (NM_001032999)	promoter-TSS (NM_001032999)	4	NM_001032999	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
65649	chr14	52326321	52326730	+	0	NA	intron (NM_000956, intron 1 of 1)	MIR|SINE|MIR	12213	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
61641	chr13	73866071	73866300	+	0	NA	intron (NM_007249, intron 3 of 7)	AluSz6|SINE|Alu	267744	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
227098	chr9	85731201	85731600	+	0	NA	intron (NM_001330701, intron 1 of 25)	L1M4|LINE|L1	10554	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
218933	chr8	60910801	60911000	+	0	NA	promoter-TSS (NR_168430)	promoter-TSS (NR_168430)	-102	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
42696	chr11	72658101	72658300	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	10864	NM_001146209	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
64676	chr14	32078901	32079130	+	0	NA	intron (NM_001030055, intron 1 of 6)	intron (NM_001030055, intron 1 of 6)	1711	NM_001173	394		NM_001173	ENSG00000100852	ARHGAP5	GFI2|RhoGAP5|p190-B|p190BRhoGAP	Rho GTPase activating protein 5	protein-coding
220884	chr8	103512021	103512350	+	0	NA	intron (NM_001348496, intron 1 of 23)	LTR41C|LTR|ERVL	-10275	NR_145698	105375690		NR_145697		LOC105375690	-	uncharacterized LOC105375690	ncRNA
219223	chr8	66772521	66772980	+	0	NA	intron (NM_001033578, intron 1 of 16)	AluY|SINE|Alu	-2431	NM_013257	23678		NM_013257	ENSG00000104205	SGK3	CISK|SGK2|SGKL	serum/glucocorticoid regulated kinase family member 3	protein-coding
219347	chr8	70247701	70248100	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	155490	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
147674	chr20	62302501	62304080	+	0	NA	intron (NM_001281438, intron 1 of 8)	CpG	293	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
188546	chr5	156850551	156850650	+	0	NA	exon (NM_206858, exon 1 of 1)	exon (NM_206858, exon 1 of 1)	305	NM_206858	153743		NM_206858	ENSG00000231989	PPP1R2B	PPP1R2P3	PPP1R2 family member B	protein-coding
239271	chrY	13564751	13564850	+	0	NA	Intergenic	L1PA2|LINE|L1	-84130	NR_047601	7404		NM_007125	ENSG00000183878	UTY	KDM6AL|KDM6C|UTY1	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	protein-coding
198085	chr6	90271751	90272450	+	0	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	24743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
170497	chr3	186126501	186126900	+	0	NA	Intergenic	Intergenic	-17611	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
224313	chr9	6680701	6682450	+	0	NA	Intergenic	CpG	-35846	NM_000170	2731		NM_000170	ENSG00000178445	GLDC	GCE|GCE1|GCSP|HYGN1	glycine decarboxylase	protein-coding
12544	chr1	108643301	108643980	+	0	NA	Intergenic	Intergenic	17453	NM_001102592	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
194408	chr6	33028671	33028850	+	0	NA	Intergenic	Intergenic	-19169	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
186355	chr5	134848771	134849680	+	0	NA	intron (NM_001135586, intron 1 of 1)	AluSg|SINE|Alu	3257	NM_001300894	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
209758	chr7	87209721	87210300	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	9722	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
169925	chr3	178006021	178006280	+	0	NA	Intergenic	Intergenic	189285	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
101492	chr17	67646601	67646800	+	0	NA	intron (NM_181671, intron 6 of 9)	AluJb|SINE|Alu	-71133	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
135579	chr2	165950471	165950980	+	0	NA	intron (NM_024753, intron 1 of 28)	AluSz|SINE|Alu	3051	NM_024753	79809		NM_024753	ENSG00000123607	TTC21B	ATD4|CFAP60|FAP60|FLA17|IFT139|IFT139B|JBTS11|NPHP12|Nbla10696|SRTD4|THM1	tetratricopeptide repeat domain 21B	protein-coding
228609	chr9	105341821	105342130	+	0	NA	intron (NM_001330731, intron 4 of 15)	intron (NM_001330731, intron 4 of 15)	97324	NM_080546	23446		NM_022109	ENSG00000070214	SLC44A1	CD92|CDW92|CHTL1|CONATOC|CTL1	solute carrier family 44 member 1	protein-coding
234963	chrX	39195151	39195450	+	0	NA	Intergenic	Intergenic	132062	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
205577	chr7	21358621	21359280	+	0	NA	Intergenic	Intergenic	-69133	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
168235	chr3	141367951	141368250	+	0	NA	promoter-TSS (NM_001376114)	promoter-TSS (NM_001376114)	103	NM_001376112	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
151858	chr22	18581121	18581380	+	0	NA	Intergenic	AluSc8|SINE|Alu	30669	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
83154	chr16	23457871	23458030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4761	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
48778	chr12	11650801	11651980	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	1716	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
15195	chr1	149223921	149224580	+	0	NA	Intergenic	L1PB1|LINE|L1	-23104	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
40560	chr11	64338971	64341450	+	0	NA	promoter-TSS (NM_032251)	promoter-TSS (NM_032251)	6	NM_032251	283234		NM_032251	ENSG00000168071	CCDC88B	BRLZ|CCDC88|HKRP3|gipie	coiled-coil domain containing 88B	protein-coding
43631	chr11	83285171	83286730	+	0	NA	exon (NM_021825, exon 1 of 9)	exon (NM_021825, exon 1 of 9)	457	NM_001286120	60492		NM_021825	ENSG00000137500	CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
158746	chr3	9248021	9248600	+	0	NA	intron (NM_014850, intron 1 of 21)	intron (NM_014850, intron 1 of 21)	1336	NM_014850	9901		NM_014850	ENSG00000196220	SRGAP3	ARHGAP14|MEGAP|SRGAP2|WRP	SLIT-ROBO Rho GTPase activating protein 3	protein-coding
175895	chr4	80077701	80078130	+	0	NA	Intergenic	Intergenic	-4443	NM_001286780	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
164113	chr3	56682801	56684080	+	0	NA	promoter-TSS (NM_001365637)	promoter-TSS (NM_001365637)	-175	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
15408	chr1	150242051	150242430	+	0	NA	Intergenic	AluSg|SINE|Alu	-6128	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
9246	chr1	46179371	46180150	+	0	NA	intron (NM_005727, intron 1 of 8)	GA-rich|Low_complexity|Low_complexity	-3272	NM_001303427	110117499		NM_001303427	ENSG00000278139	P3R3URF-PIK3R3	LOC110117498-PIK3R3	P3R3URF-PIK3R3 readthrough	protein-coding
67303	chr14	69573671	69573830	+	0	NA	intron (NM_001271507, intron 1 of 1)	CpG	1121	NM_001271507	56936		NM_020181	ENSG00000267909	CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
33942	chr10	124620901	124621430	+	0	NA	3' UTR (NM_014661, exon 5 of 5)	3' UTR (NM_014661, exon 5 of 5)	-82863	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
224019	chr9	2857321	2857900	+	0	NA	Intergenic	Intergenic	-13515	NM_014878	9933		NM_014878	ENSG00000080608	PUM3	HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5	pumilio RNA binding family member 3	protein-coding
228959	chr9	113446271	113446750	+	0	NA	intron (NM_144488, intron 1 of 25)	intron (NM_144488, intron 1 of 25)	1780	NM_144488	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
227066	chr9	84271371	84271730	+	0	NA	Intergenic	Intergenic	69208	NR_037638	64078		NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
182121	chr5	56097951	56098450	+	0	NA	Intergenic	Intergenic	103033	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
15160	chr1	148956301	148957400	+	0	NA	intron (NM_001350520, intron 1 of 39)	intron (NM_001350520, intron 1 of 39)	4393	NM_001350520	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
236741	chrX	78143421	78143680	+	0	NA	Intergenic	AluJb|SINE|Alu	-3900	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
40595	chr11	64553271	64554100	+	0	NA	Intergenic	Intergenic	-2256	NM_018484	55867		NM_018484	ENSG00000168065	SLC22A11	OAT4|hOAT4	solute carrier family 22 member 11	protein-coding
110128	chr19	1594421	1594930	+	0	NA	Intergenic	AluSq|SINE|Alu	-1810	NM_001281453	53615		NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
237151	chrX	107429251	107429350	+	0	NA	Intergenic	Intergenic	-93150	NM_032428	84443		NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
173150	chr4	6676871	6677800	+	0	NA	Intergenic	Intergenic	3260	NR_015433								
80787	chr16	3236001	3236380	+	0	NA	Intergenic	Intergenic	-1032	NM_198087	7752		NM_003454	ENSG00000010539	ZNF200	-	zinc finger protein 200	protein-coding
199872	chr6	127810251	127810350	+	0	NA	intron (NM_001164685, intron 4 of 6)	intron (NM_001164685, intron 4 of 6)	44888	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
14420	chr1	144362071	144362430	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	11409	NM_001164261	645142		NM_001164261	ENSG00000289549	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding
48941	chr12	12723671	12724500	+	0	NA	Intergenic	CpG	-1832	NM_001130415	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
122587	chr19	49698951	49699430	+	0	NA	intron (NR_108072, intron 5 of 20)	intron (NR_108072, intron 5 of 20)	7694	NM_001378484	126129		NM_152359	ENSG00000169169	CPT1C	CATL1|CPT I-C|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73	carnitine palmitoyltransferase 1C	protein-coding
167815	chr3	133585721	133585980	+	0	NA	intron (NM_001282765, intron 3 of 4)	intron (NM_001282765, intron 3 of 4)	11416	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
221707	chr8	127188901	127189530	+	0	NA	intron (NR_120364, intron 1 of 2)	intron (NR_120364, intron 1 of 2)	8412	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
8889	chr1	43789851	43790280	+	0	NA	intron (NM_001270463, intron 2 of 7)	L4_A_Mam|LINE|RTE-X	-48557	NR_106727	102464830		NR_106727	ENSG00000283477	MIR6079	hsa-mir-6079	microRNA 6079	ncRNA
152823	chr22	21876451	21877080	+	0	NA	Intergenic	Intergenic	-9085	NM_138957	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
59563	chr13	27375571	27376350	+	0	NA	Intergenic	Intergenic	-48659	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
7549	chr1	34984571	34985730	+	0	NA	intron (NM_001195156, intron 1 of 2)	CpG	197	NM_001195156	100506144		NM_001195156	ENSG00000243749	TMEM35B	ZMYM6NB	transmembrane protein 35B	protein-coding
121135	chr19	46143721	46143800	+	0	NA	Intergenic	L2a|LINE|L2	-4022	NM_001002915	147920		NM_001002915	ENSG00000204866	IGFL2	UNQ645|VPRI645	IGF like family member 2	protein-coding
124283	chr19	57822171	57822330	+	0	NA	Intergenic	AluSp|SINE|Alu	5212	NR_024162	2282		NR_024162		FKBP1AP1	FKBP12|FKBP1P1	FKBP prolyl isomerase 1A pseudogene 1	pseudo
230102	chr9	127570971	127571130	+	0	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	-1977	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
75917	chr15	70092921	70093180	+	0	NA	intron (NM_001282982, intron 2 of 17)	intron (NM_001282982, intron 2 of 17)	1739	NM_001282982	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
118332	chr19	35585921	35586180	+	0	NA	Intergenic	Intergenic	-11845	NR_110750	102723617		NR_110750	ENSG00000224910	LINC01766	-	long intergenic non-protein coding RNA 1766	ncRNA
89879	chr16	89647971	89648650	+	0	NA	intron (NM_002768, intron 4 of 6)	CpG	9398	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
49007	chr12	14220251	14220350	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	-145332	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
19824	chr1	182795671	182795830	+	0	NA	intron (NM_001200056, intron 3 of 12)	intron (NM_001200056, intron 3 of 12)	5977	NM_001200056	80896		NM_030769	ENSG00000135838	NPL	C112|C1orf13|NAL|NPL1	N-acetylneuraminate pyruvate lyase	protein-coding
172798	chr4	2956651	2956950	+	0	NA	exon (NM_003703, exon 3 of 19)	exon (NM_003703, exon 3 of 19)	6606	NM_001291978	8602		NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
38632	chr11	46353851	46354880	+	0	NA	intron (NM_001199266, intron 1 of 30)	AluJr4|SINE|Alu	6902	NM_001199268	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
128052	chr2	47781271	47781680	+	0	NA	Intergenic	Intergenic	-1607	NM_001281493	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
102051	chr17	74871051	74871530	+	0	NA	intron (NM_001258012, intron 2 of 11)	MER81|DNA|hAT-Blackjack	1704	NR_047576	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
212550	chr7	128864551	128865600	+	0	NA	intron (NM_004231, intron 1 of 1)	intron (NM_004231, intron 1 of 1)	-1255	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
124912	chr2	8487871	8489830	+	0	NA	Intergenic	Intergenic	94942	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
103	chr1	478951	479050	+	0	NA	Intergenic	Intergenic	16445	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
46994	chr12	101971	102550	+	0	NA	intron (NM_015232, intron 2 of 12).2	intron (NM_015232, intron 2 of 12).2	24884	NM_015232	440073		NM_015232	ENSG00000120645	IQSEC3	-	IQ motif and Sec7 domain ArfGEF 3	protein-coding
10977	chr1	84365801	84366400	+	0	NA	intron (NR_003927, intron 5 of 6)	intron (NR_003927, intron 5 of 6)	18701	NR_003927	391051		NR_003927		UOX	UOXP|URICASE	urate oxidase (pseudogene)	pseudo
72005	chr15	25864171	25864850	+	0	NA	Intergenic	Intergenic	-1308	NM_024490	57194		NM_024490	ENSG00000206190	ATP10A	ATP10C|ATPVA|ATPVC	ATPase phospholipid transporting 10A (putative)	protein-coding
94028	chr17	27236651	27237020	+	0	NA	Intergenic	Intergenic	57161	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
61237	chr13	49791321	49793980	+	0	NA	promoter-TSS (NM_002267)	promoter-TSS (NM_002267)	32	NM_002267	3839		NM_002267	ENSG00000102753	KPNA3	IPOA4|SPG88|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
31108	chr10	89309801	89310400	+	0	NA	TTS (NM_001547)	TTS (NM_001547)	8054	NM_001547	3433		NM_001547	ENSG00000119922	IFIT2	G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54|ISG-54 K|ISG-54K|ISG54|P54|cig42	interferon induced protein with tetratricopeptide repeats 2	protein-coding
195062	chr6	35503571	35504130	+	0	NA	intron (NM_001289395, intron 10 of 13)	intron (NM_001289395, intron 10 of 13)	-6771	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
71033	chr14	104780051	104780150	+	0	NA	exon (NM_005163, exon 3 of 14)	exon (NM_005163, exon 3 of 14)	13501	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
216809	chr8	22560901	22561100	+	0	NA	intron (NM_005775, intron 5 of 20)	intron (NM_005775, intron 5 of 20)	-4729	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
107396	chr18	46097531	46098850	+	0	NA	exon (NM_001257334, exon 1 of 12)	exon (NM_001257334, exon 1 of 12)	106	NM_004046	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
119736	chr19	41266101	41266550	+	0	NA	intron (NM_001301016, intron 1 of 14)	AluSq2|SINE|Alu	1244	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
203820	chr7	1411021	1411280	+	0	NA	Intergenic	Intergenic	48320	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
23602	chr1	230104621	230105000	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	37572	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
31460	chr10	96299471	96300030	+	0	NA	Intergenic	Intergenic	-4684	NM_004088	1791		NM_004088	ENSG00000107447	DNTT	TDT	DNA nucleotidylexotransferase	protein-coding
205180	chr7	7595501	7595780	+	0	NA	intron (NR_163250, intron 9 of 11)	intron (NR_163250, intron 9 of 11)	27614	NM_001370078	54468		NM_019005	ENSG00000164654	MIOS	MIO|Sea4|Yulink	meiosis regulator for oocyte development	protein-coding
105686	chr18	2660901	2661380	+	0	NA	intron (NM_015295, intron 1 of 47)	L1PA8|LINE|L1	5414	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
144637	chr20	35949971	35950330	+	0	NA	3' UTR (NM_016436, exon 18 of 18)	3' UTR (NM_016436, exon 18 of 18)	4352	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
86962	chr16	68130001	68130480	+	0	NA	intron (NM_173165, intron 3 of 9)	L1MA4|LINE|L1	44870	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
157887	chr22	49748751	49749300	+	0	NA	Intergenic	Intergenic	75306	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
199353	chr6	115960251	115960550	+	0	NA	intron (NM_002031, intron 4 of 7)	L1PA2|LINE|L1	-78331	NR_027338	728402		NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
146893	chr20	51528201	51529130	+	0	NA	intron (NM_001258292, intron 1 of 9)	intron (NM_001258292, intron 1 of 9)	14054	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
187706	chr5	143380421	143380680	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	22733	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
50305	chr12	46455051	46455380	+	0	NA	intron (NR_125378, intron 3 of 3)	intron (NR_125378, intron 3 of 3)	71108	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
229985	chr9	126816851	126816950	+	0	NA	intron (NM_014007, intron 2 of 2)	intron (NM_014007, intron 2 of 2)	11860	NM_014007	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
31495	chr10	96655021	96655280	+	0	NA	intron (NM_152309, intron 3 of 16)	AluJb|SINE|Alu	65364	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
127523	chr2	42311971	42312130	+	0	NA	intron (NM_019063, intron 17 of 22)	intron (NM_019063, intron 17 of 22)	47988	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
35809	chr11	2211471	2211630	+	0	NA	Intergenic	Intergenic	38487	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
31801	chr10	98414571	98415830	+	0	NA	promoter-TSS (NM_032709)	promoter-TSS (NM_032709)	-18	NM_032709	84795		NM_032709	ENSG00000119943	PYROXD2	C10orf33|FP3420|YUEF	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding
106085	chr18	9134171	9134700	+	0	NA	TTS (NM_021074)	TTS (NM_021074)	2285	NR_110771	101927275		NR_110771	ENSG00000266053	NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
163466	chr3	50619951	50620050	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	2849	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
194573	chr6	33415701	33416230	+	0	NA	TTS (NM_001014837)	TTS (NM_001014837)	2142	NM_001014838	51596		NM_015921	ENSG00000112514	CUTA	ACHAP|C6orf82	cutA divalent cation tolerance homolog	protein-coding
151237	chr21	45283551	45283900	+	0	NA	intron (NM_133635, intron 2 of 8)	intron (NM_133635, intron 2 of 8)	4170	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
14077	chr1	120848221	120848500	+	0	NA	Intergenic	AluY|SINE|Alu	2625	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
210218	chr7	99314371	99314950	+	0	NA	Intergenic	Intergenic	-11213	NM_001190996	10552		NM_006409	ENSG00000241685	ARPC1A	Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L	actin related protein 2/3 complex subunit 1A	protein-coding
181067	chr5	36606571	36606950	+	0	NA	intron (NM_004172, intron 1 of 9)	intron (NM_004172, intron 1 of 9)	154	NM_004172	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
90928	chr17	2606071	2607550	+	0	NA	intron (NM_000430, intron 1 of 10)	L1ME3Cz|LINE|L1	13156	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
74779	chr15	63257901	63258100	+	0	NA	intron (NM_016530, intron 5 of 7)	AluSg|SINE|Alu	-19550	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
235716	chrX	48906821	48907080	+	0	NA	intron (NM_001282649, intron 1 of 2)	AluSg|SINE|Alu	4696	NM_005660	7355		NM_005660	ENSG00000102100	SLC35A2	CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL	solute carrier family 35 member A2	protein-coding
75746	chr15	68293051	68293150	+	0	NA	3' UTR (NM_015322, exon 2 of 2)	3' UTR (NM_015322, exon 2 of 2)	15355	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
93606	chr17	19141451	19142550	+	0	NA	intron (NM_001353418, intron 3 of 3)	intron (NM_001353418, intron 3 of 3)	14411	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
213692	chr7	140174271	140174430	+	0	NA	intron (NM_030647, intron 1 of 19)	intron (NM_030647, intron 1 of 19)	2633	NM_030647	80853		NM_030647	ENSG00000006459	KDM7A	JHDM1D	lysine demethylase 7A	protein-coding
139265	chr2	219452001	219452400	+	0	NA	intron (NM_005876, intron 6 of 40)	intron (NM_005876, intron 6 of 40)	-8612	NM_001173476	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
58588	chr12	132456351	132456650	+	0	NA	Intergenic	Intergenic	-33651	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
2920	chr1	11718671	11720100	+	0	NA	intron (NM_198545, intron 6 of 6)	L1MC2|LINE|L1	-16700	NM_001040194	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
222676	chr8	141240321	141240580	+	0	NA	intron (NM_001286646, intron 2 of 8)	intron (NM_001286646, intron 2 of 8)	-11876	NM_001080431	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
58312	chr12	131044501	131045130	+	0	NA	intron (NM_001330497, intron 14 of 25)	CpG	-50839	NR_131950	105755954		NR_131950		ADGRD1-AS1	LACAT8	ADGRD1 antisense RNA 1	ncRNA
192277	chr6	20408721	20408980	+	0	NA	intron (NM_001243076, intron 1 of 6)	intron (NM_001243076, intron 1 of 6)	5171	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
95000	chr17	32359751	32360280	+	0	NA	intron (NM_001098507, intron 3 of 11)	intron (NM_001098507, intron 3 of 11)	9858	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
159342	chr3	13091901	13092800	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	-18921	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
122170	chr19	48898171	48898600	+	0	NA	intron (NM_003323, intron 1 of 12)	intron (NM_003323, intron 1 of 12)	359	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
186190	chr5	134215871	134216030	+	0	NA	intron (NM_002715, intron 1 of 6)	intron (NM_002715, intron 1 of 6)	9604	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
6753	chr1	30729621	30729880	+	0	NA	Intergenic	L2b|LINE|L2	-6165	NM_002379	4146		NM_002379	ENSG00000162510	MATN1	CMP|CRTM	matrilin 1	protein-coding
42288	chr11	68336621	68336950	+	0	NA	intron (NM_002335, intron 1 of 22)	L1MB3|LINE|L1	24194	NM_002335	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
163498	chr3	51379351	51380050	+	0	NA	intron (NM_004947, intron 51 of 52)	intron (NM_004947, intron 51 of 52)	-5591	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
158201	chr22	50249221	50249530	+	0	NA	exon (NM_032019, exon 7 of 20)	exon (NM_032019, exon 7 of 20)	1890	NM_032019	83933		NM_032019	ENSG00000100429	HDAC10	HD10	histone deacetylase 10	protein-coding
98347	chr17	46290001	46290580	+	0	NA	intron (NM_001352769, intron 4 of 4)	AluJb|SINE|Alu	-4841	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
64242	chr14	23112621	23113350	+	0	NA	Intergenic	Intergenic	6270	NM_001805	1053		NM_001805	ENSG00000092067	CEBPE	C/EBP-epsilon|CRP1|IMD108|SGD1|c/EBP epsilon	CCAAT enhancer binding protein epsilon	protein-coding
55094	chr12	98397101	98398100	+	0	NA	Intergenic	Intergenic	59545	NR_033801	121456		NR_033801	ENSG00000293147	SLC9A7P1	-	solute carrier family 9 member 7 pseudogene 1	pseudo
119113	chr19	39339251	39339950	+	0	NA	Intergenic	AluJb|SINE|Alu	-2821	NM_001384587	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
38618	chr11	46336471	46337200	+	0	NA	intron (NM_201532, intron 1 of 30)	AluJo|SINE|Alu	3909	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
159193	chr3	12870621	12871550	+	0	NA	Intergenic	Intergenic	14126	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
194240	chr6	32440721	32440980	+	0	NA	intron (NM_019111, intron 1 of 4).6	intron (NM_019111, intron 1 of 4).6	963	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
188364	chr5	151774051	151774430	+	0	NA	intron (NM_198395, intron 1 of 11)	intron (NM_198395, intron 1 of 11)	-2064	NR_132345	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
201417	chr6	146770821	146771480	+	0	NA	intron (NM_024694, intron 29 of 35)	intron (NM_024694, intron 29 of 35)	32674	NR_003954	729176		NR_003954		KATNBL1P6	-	katanin regulatory subunit B1 like 1 pseudogene 6	pseudo
131419	chr2	96285551	96285650	+	0	NA	intron (NM_014014, intron 29 of 44)	intron (NM_014014, intron 29 of 44)	19375	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
124147	chr19	55704671	55704900	+	0	NA	3' UTR (NM_001130072, exon 11 of 11)	3' UTR (NM_001130072, exon 11 of 11)	28160	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
83940	chr16	29111721	29112580	+	0	NA	intron (NR_003369, intron 15 of 16)	intron (NR_003369, intron 15 of 16)	37308	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
174623	chr4	40304301	40304700	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-2685	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
42939	chr11	73415121	73415400	+	0	NA	intron (NM_015159, intron 4 of 7)	MIR3|SINE|MIR	38592	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
63167	chr13	113667301	113667900	+	0	NA	exon (NM_002929, exon 1 of 7)	exon (NM_002929, exon 1 of 7)	381	NM_002929	6011		NM_002929	ENSG00000185974	GRK1	GPRK1|RHOK|RK	G protein-coupled receptor kinase 1	protein-coding
208487	chr7	67281121	67281380	+	0	NA	intron (NM_001382715, intron 2 of 7)	intron (NM_001382715, intron 2 of 7)	2958	NM_001382715	442572		NM_001382715	ENSG00000230358	SPDYE21	SPDYE21P	speedy/RINGO cell cycle regulator family member E21	protein-coding
114925	chr19	13961971	13962630	+	0	NA	TTS (NM_138353)	TTS (NM_138353)	-8908	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
138489	chr2	207131901	207132500	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	1937	NM_001270944	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
148200	chr20	63560621	63561080	+	0	NA	exon (NM_001037335, exon 16 of 20)	exon (NM_001037335, exon 16 of 20)	6691	NM_001319152	79025		NM_024059	ENSG00000125531	FNDC11	C20orf195	fibronectin type III domain containing 11	protein-coding
142064	chr20	2104051	2104150	+	0	NA	intron (NM_080836, intron 2 of 3)	intron (NM_080836, intron 2 of 3)	2273	NM_080836	140901		NM_080836	ENSG00000125834	STK35	CLIK1|STK35L1	serine/threonine kinase 35	protein-coding
45422	chr11	118393151	118393750	+	0	NA	intron (NM_004788, intron 19 of 19)	AluJb|SINE|Alu	-7939	NR_033759	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
99072	chr17	48948851	48948950	+	0	NA	Intergenic	Intergenic	-4058	NM_001317192	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
30594	chr10	80151671	80152000	+	0	NA	3' UTR (NM_001157, exon 15 of 15)	3' UTR (NM_001157, exon 15 of 15)	19105	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
236206	chrX	65683021	65683950	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	15831	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
50456	chr12	47740351	47740780	+	0	NA	intron (NM_001098532, intron 20 of 26)	intron (NM_001098532, intron 20 of 26)	-15075	NM_001172439	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
141011	chr2	238161901	238162130	+	0	NA	intron (NM_001291832, intron 2 of 7)	intron (NM_001291832, intron 2 of 7)	3045	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
173395	chr4	7973321	7974200	+	0	NA	intron (NM_001286688, intron 14 of 14)	intron (NM_001286688, intron 14 of 14)	31621	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
68090	chr14	75288871	75289230	+	0	NA	Intergenic	MIR|SINE|MIR	-5354	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
191641	chr6	13327951	13329730	+	0	NA	promoter-TSS (NM_001318806)	promoter-TSS (NM_001318806)	-257	NM_001143964	51256		NM_016495	ENSG00000145979	TBC1D7	MGCPH|PIG51|TBC7	TBC1 domain family member 7	protein-coding
182381	chr5	61069171	61069330	+	0	NA	intron (NM_174889, intron 1 of 3)	intron (NM_174889, intron 1 of 3)	-93066	NR_109908	101928630		NR_109908		SMIM15-AS1	CTC-436P18.1	SMIM15 antisense RNA 1	ncRNA
116167	chr19	17402701	17404580	+	0	NA	intron (NM_004335, intron 4 of 4)	intron (NM_004335, intron 4 of 4)	1990	NM_004335	684		NM_004335	ENSG00000130303	BST2	CD317|HM1.24|TETHERIN	bone marrow stromal cell antigen 2	protein-coding
183228	chr5	76337751	76338350	+	0	NA	intron (NM_001297716, intron 12 of 12)	intron (NM_001297716, intron 12 of 12)	-65235	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
176426	chr4	89261021	89261280	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	46650	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
76350	chr15	74460221	74462030	+	0	NA	promoter-TSS (NM_001286739)	promoter-TSS (NM_001286739)	35	NM_032907	84993		NM_032907	ENSG00000138629	UBL7	BMSC-UbP|TCBA1	ubiquitin like 7	protein-coding
107368	chr18	45976651	45977150	+	0	NA	Intergenic	Intergenic	-9571	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
110388	chr19	1929351	1930450	+	0	NA	Intergenic	Intergenic	-11272	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
44162	chr11	96212471	96213150	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-128628	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
158080	chr22	49973321	49973800	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	10694	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
29283	chr10	69224171	69224330	+	0	NA	intron (NR_120648, intron 2 of 4)	intron (NR_120648, intron 2 of 4)	3918	NM_025130	80201		NM_025130	ENSG00000156510	HKDC1	RP92	hexokinase domain containing 1	protein-coding
10624	chr1	69568821	69569080	+	0	NA	promoter-TSS (NM_001366842)	promoter-TSS (NM_001366842)	196	NM_001350216	57554		NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
157506	chr22	45332801	45333000	+	0	NA	intron (NR_146323, intron 9 of 11)	AluSp|SINE|Alu	14457	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
80679	chr16	3032721	3033030	+	0	NA	intron (NR_047572, intron 2 of 7)	L2b|LINE|L2	394	NR_047572	100128770		NR_047572	ENSG00000205890	LOC100128770	-	uncharacterized LOC100128770	ncRNA
235133	chrX	41010001	41010550	+	0	NA	Intergenic	LTR33C|LTR|ERVL	-75170	NM_001039591	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
128879	chr2	64094901	64095100	+	0	NA	exon (NM_020651, exon 7 of 7)	exon (NM_020651, exon 7 of 7)	49420	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
160824	chr3	33052971	33053530	+	0	NA	intron (NM_000404, intron 7 of 15)	intron (NM_000404, intron 7 of 15)	43582	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
90364	chr17	1234051	1234350	+	0	NA	Intergenic	Intergenic	-4478	NM_001322841	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
189891	chr5	177333571	177333930	+	0	NA	intron (NM_006816, intron 7 of 7)	intron (NM_006816, intron 7 of 7)	17918	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
68065	chr14	75260801	75261280	+	0	NA	Intergenic	Intergenic	-17788	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
224997	chr9	33116201	33116650	+	0	NA	intron (NM_001378495, intron 3 of 5)	AluSc|SINE|Alu	7733	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
199059	chr6	111559351	111560050	+	0	NA	intron (NM_147686, intron 8 of 8)	intron (NM_147686, intron 8 of 8)	7579	NM_001164283	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
148081	chr20	63293351	63293450	+	0	NA	intron (NM_020882, intron 1 of 35)	intron (NM_020882, intron 1 of 35)	214	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
43247	chr11	75524521	75525290	+	0	NA	intron (NM_030792, intron 1 of 16)	intron (NM_030792, intron 1 of 16)	668	NM_001351168	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
26058	chr10	12605401	12606350	+	0	NA	intron (NM_153498, intron 2 of 10)	intron (NM_153498, intron 2 of 10)	27122	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
88630	chr16	85626301	85626580	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	13118	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
29076	chr10	67899601	67899800	+	0	NA	intron (NM_001142498, intron 3 of 7)	L1MC5|LINE|L1	8298	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
145979	chr20	46356121	46356380	+	0	NA	intron (NM_173179, intron 4 of 9)	intron (NM_173179, intron 4 of 9)	8175	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
25187	chr10	5577171	5577530	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	18768	NR_134491	105376382		NR_134491	ENSG00000242147	LASTR	LINC02657	lncRNA associated with SART3 regulation of splicing	ncRNA
201591	chr6	149343271	149343680	+	0	NA	intron (NM_001369506, intron 2 of 7)	AluSx3|SINE|Alu	25175	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
84194	chr16	29852621	29853280	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	10276	NM_006319	10423		NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
151010	chr21	44452121	44452380	+	0	NA	intron (NR_047476, intron 2 of 3)	AluJb|SINE|Alu	3034	NR_047476	100861510		NR_047476	ENSG00000229356	LRRC3-DT	LRRC3-AS1	LRRC3 divergent transcript	ncRNA
111090	chr19	3187671	3187830	+	0	NA	intron (NM_020170, intron 1 of 14)	MER20|DNA|hAT-Charlie	1820	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
174724	chr4	42670671	42670930	+	0	NA	Intergenic	Intergenic	-13695	NM_001105529	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
3172	chr1	13665601	13666400	+	0	NA	Intergenic	Intergenic	-34188	NM_001135610	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
152706	chr22	21638951	21639250	+	0	NA	Intergenic	AluYc|SINE|Alu	-3202	NM_022044	23753		NM_022044	ENSG00000128228	SDF2L1	-	stromal cell derived factor 2 like 1	protein-coding
25389	chr10	6498571	6499530	+	0	NA	intron (NM_001282645, intron 3 of 16)	intron (NM_001282645, intron 3 of 16)	81226	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
48414	chr12	9668621	9668980	+	0	NA	promoter-TSS (NM_001197319)	promoter-TSS (NM_001197319)	-913	NM_001197318	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
21381	chr1	205216871	205217030	+	0	NA	Intergenic	AluJb|SINE|Alu	-5248	NM_015375	25778		NM_015375	ENSG00000133059	DSTYK	CAKUT1|DustyPK|HDCMD38P|RHDNS1|RIP5|RIPK5|SPG23	dual serine/threonine and tyrosine protein kinase	protein-coding
136511	chr2	177243771	177243930	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	12160	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
213918	chr7	142556851	142557030	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	82413	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
232372	chr9	135904921	135905180	+	0	NA	intron (NM_015447, intron 1 of 16)	intron (NM_015447, intron 1 of 16)	2496	NM_015447	157922		NM_015447	ENSG00000130559	CAMSAP1	CDCBM12	calmodulin regulated spectrin associated protein 1	protein-coding
203571	chr7	906601	908100	+	0	NA	intron (NM_006869, intron 4 of 10)	intron (NM_006869, intron 4 of 10)	13539	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
113070	chr19	8219821	8220080	+	0	NA	intron (NM_024552, intron 2 of 11)	AluJr|SINE|Alu	10580	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
135364	chr2	160420971	160421130	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	-13168	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
136836	chr2	183037621	183038830	+	0	NA	5' UTR (NM_013436, exon 1 of 31)	5' UTR (NM_013436, exon 1 of 31)	232	NM_013436	10787		NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125|p125Nap1	NCK associated protein 1	protein-coding
177344	chr4	110058801	110059000	+	0	NA	intron (NM_024090, intron 3 of 3)	intron (NM_024090, intron 3 of 3)	139715	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
34568	chr10	133227521	133227780	+	0	NA	Intergenic	Intergenic	-2567	NM_003577	8433		NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
182887	chr5	70047971	70048200	+	0	NA	Intergenic	AluSz|SINE|Alu	-1438	NM_022874	6606		NM_000344	ENSG00000172062	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
234538	chrX	19678851	19679500	+	0	NA	intron (NM_001353892, intron 7 of 17)	L2c|LINE|L2	-8176	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
222649	chr8	141160721	141161230	+	0	NA	intron (NM_014957, intron 9 of 22)	intron (NM_014957, intron 9 of 22)	32386	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
109707	chr19	1061551	1061950	+	0	NA	intron (NM_019112, intron 40 of 46)	intron (NM_019112, intron 40 of 46)	-4209	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
22816	chr1	224735271	224735430	+	0	NA	intron (NM_152495, intron 5 of 5)	intron (NM_152495, intron 5 of 5)	119033	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
8455	chr1	40697951	40698330	+	0	NA	intron (NM_001142590, intron 2 of 14)	AluSx1|SINE|Alu	-5879	NR_024567	100130557		NR_024567		NFYC-AS1	0808y08y	NFYC antisense RNA 1	ncRNA
34739	chr10	133764621	133765330	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-138180	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
209135	chr7	75091221	75091480	+	0	NA	Intergenic	AluSg|SINE|Alu	-1206	NM_001368301	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
59527	chr13	27170321	27170880	+	0	NA	intron (NM_182488, intron 1 of 8)	intron (NM_182488, intron 1 of 8)	1211	NM_182488	219333		NM_182488	ENSG00000152484	USP12	UBH1|USP12L1	ubiquitin specific peptidase 12	protein-coding
225930	chr9	40643651	40643980	+	0	NA	Intergenic	Intergenic	143834	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
218596	chr8	55934701	55934900	+	0	NA	intron (NM_002350, intron 1 of 12)	intron (NM_002350, intron 1 of 12)	-31945	NR_145767	109617001		NR_145767	ENSG00000199405	SNORA1B	-	small nucleolar RNA, H/ACA box 1B	snoRNA
171375	chr3	196103551	196103650	+	0	NA	Intergenic	Intergenic	-21510	NM_001313966	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
189397	chr5	172757471	172757730	+	0	NA	intron (NR_161233, intron 1 of 3)	L2b|LINE|L2	2097	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
151169	chr21	44965271	44966000	+	0	NA	intron (NM_001316983, intron 3 of 5)	L1M5|LINE|L1	25606	NM_058190	85395		NM_058190	ENSG00000160256	SLX9	C21orf70|FAM207A|PRED56	SLX9 ribosome biogenesis factor	protein-coding
185489	chr5	131301551	131303430	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluSz|SINE|Alu	38437	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
171840	chr4	690201	690400	+	0	NA	Intergenic	Intergenic	-1149	NM_001294342	84179		NM_032219	ENSG00000169026	SLC49A3	LP2561|MFSD7	solute carrier family 49 member 3	protein-coding
96122	chr17	39646671	39646830	+	0	NA	intron (NM_001165938, intron 1 of 13)	intron (NM_001165938, intron 1 of 13)	9606	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
15605	chr1	150607771	150607930	+	0	NA	Intergenic	AluJb|SINE|Alu	21283	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
31286	chr10	92552471	92552630	+	0	NA	intron (NR_136399, intron 1 of 25)	L1MC4a|LINE|L1	20956	NM_001322796	3416		NM_004969	ENSG00000119912	IDE	INSULYSIN	insulin degrading enzyme	protein-coding
63369	chr13	114048451	114050180	+	0	NA	intron (NM_001320822, intron 3 of 23).2	intron (NM_001320822, intron 3 of 23).2	28640	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
2764	chr1	10693371	10696030	+	0	NA	intron (NM_017766, intron 3 of 15)	CpG-426	101946	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
94398	chr17	28975121	28975380	+	0	NA	intron (NM_178860, intron 3 of 16)	intron (NM_178860, intron 3 of 16)	-23732	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
229492	chr9	122218401	122218730	+	0	NA	intron (NM_199160, intron 4 of 8)	L2a|LINE|L2	3175	NM_001242335	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
80400	chr16	2588101	2588300	+	0	NA	intron (NM_001261816, intron 11 of 11)	intron (NM_001261816, intron 11 of 11)	-15184	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
92812	chr17	16017321	16017580	+	0	NA	intron (NM_017775, intron 7 of 9)	AluYh3|SINE|Alu	17626	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
140707	chr2	234368151	234369130	+	0	NA	Intergenic	Intergenic	85955	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
80168	chr16	2112671	2112830	+	0	NA	intron (NM_001009944, intron 13 of 45)	intron (NM_001009944, intron 13 of 45)	-5997	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
206499	chr7	33185771	33186000	+	0	NA	intron (NR_145411, intron 5 of 23)	intron (NR_145411, intron 5 of 23)	56321	NM_198428	27241		NM_014451	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
78246	chr15	90742201	90742400	+	0	NA	intron (NM_001287246, intron 2 of 22)	LTR84a|LTR|ERVL	24954	NM_001287248	641		NM_000057	ENSG00000197299	BLM	BS|MGRISCE1|RECQ2|RECQL2|RECQL3	BLM RecQ like helicase	protein-coding
217291	chr8	27369051	27369550	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	43736	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
136497	chr2	177233601	177234280	+	0	NA	intron (NM_001313903, intron 2 of 4)	MIRc|SINE|MIR	21146	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
3015	chr1	12081751	12082250	+	0	NA	intron (NM_001281430, intron 1 of 13)	intron (NM_001281430, intron 1 of 13)	18623	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
169443	chr3	165206851	165207030	+	0	NA	promoter-TSS (NR_125764)	promoter-TSS (NR_125764)	-20	NR_125764	103695433		NR_125764	ENSG00000244128	LINC01322	RUS	long intergenic non-protein coding RNA 1322	ncRNA
31073	chr10	89007021	89007280	+	0	NA	intron (NR_135315, intron 2 of 6)	MIRc|SINE|MIR	-14175	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
153148	chr22	23770671	23771600	+	0	NA	Intergenic	Intergenic	-1714	NM_005940	4320		NM_005940	ENSG00000099953	MMP11	SL-3|ST3|STMY3	matrix metallopeptidase 11	protein-coding
56875	chr12	120292801	120293850	+	0	NA	promoter-TSS (NR_003925)	promoter-TSS (NR_003925)	-88	NR_003925	26835		NR_003925	ENSG00000200795	RNU4-1	RNU4A|RNU4B2|U4|U4BL	RNA, U4 small nuclear 1	snRNA
80861	chr16	3567271	3567830	+	0	NA	intron (NR_075083, intron 1 of 20)	AluSx1|SINE|Alu	9853	NM_178844	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
55968	chr12	110079321	110080650	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-6346	NR_148515	400073		NM_207435	ENSG00000174456	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
19220	chr1	172536251	172536730	+	0	NA	intron (NM_001282751, intron 1 of 21)	intron (NM_001282751, intron 1 of 21)	3340	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
26126	chr10	13707321	13707780	+	0	NA	promoter-TSS (NM_001318338)	promoter-TSS (NM_001318338)	17	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
126253	chr2	27088221	27089130	+	0	NA	intron (NM_006488, intron 1 of 7)	AluSz|SINE|Alu	1903	NM_000221	3795		NM_000221	ENSG00000138030	KHK	FRUCTU	ketohexokinase	protein-coding
161478	chr3	42376551	42376650	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	34010	NM_144634	131375		NM_144634	ENSG00000157093	LYZL4	LYC4|LYZA	lysozyme like 4	protein-coding
98149	chr17	46026851	46027150	+	0	NA	non-coding (NR_165166, exon 10 of 10)	non-coding (NR_165166, exon 10 of 10)	27750	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
168675	chr3	150577301	150577700	+	0	NA	intron (NM_001319043, intron 10 of 12)	AluJb|SINE|Alu	-25821	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
147234	chr20	57408751	57409400	+	0	NA	3' UTR (NM_017495, exon 4 of 4)	3' UTR (NM_017495, exon 4 of 4)	-16019	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
18082	chr1	160674551	160674650	+	0	NA	Intergenic	Intergenic	-27289	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
132973	chr2	111484321	111484780	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	10611	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
195178	chr6	36027071	36028500	+	0	NA	promoter-TSS (NM_139013)	promoter-TSS (NM_139013)	-23	NM_139013	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
119360	chr19	40089271	40089700	+	0	NA	intron (NM_001142579, intron 2 of 8).2	MIR|SINE|MIR	1418	NM_001010880	284323		NM_001010880	ENSG00000197782	ZNF780A	ZNF780	zinc finger protein 780A	protein-coding
9634	chr1	52544851	52544950	+	0	NA	intron (NM_015269, intron 1 of 29)	AluJr|SINE|Alu	8190	NM_015269	23318		NM_015269	ENSG00000134744	TUT4	PAPD3|TENT3A|ZCCHC11	terminal uridylyl transferase 4	protein-coding
47031	chr12	413101	413330	+	0	NA	intron (NM_032358, intron 4 of 12)	AluY|SINE|Alu	11571	NM_032358	84318		NM_032358	ENSG00000120647	CCDC77	-	coiled-coil domain containing 77	protein-coding
180928	chr5	34655251	34655900	+	0	NA	promoter-TSS (NM_001145520)	promoter-TSS (NM_001145520)	-753	NM_001145522	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
74259	chr15	57036371	57036730	+	0	NA	intron (NM_001322164, intron 3 of 19)	L1M4|LINE|L1	117105	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
68320	chr14	77498421	77499730	+	0	NA	promoter-TSS (NM_182509)	promoter-TSS (NM_182509)	-259	NM_182509	145501		NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2	protein-coding
17166	chr1	156211571	156211830	+	0	NA	non-coding (NR_104408, exon 4 of 4)	non-coding (NR_104408, exon 4 of 4)	-1288	NM_001199663	100527963		NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF-1|PMF1	PMF1-BGLAP readthrough	protein-coding
145946	chr20	46087201	46087650	+	0	NA	intron (NM_020967, intron 1 of 7)	intron (NM_020967, intron 1 of 7)	2537	NM_001348148	57727		NM_020967	ENSG00000124160	NCOA5	CIA|bA465L10.6	nuclear receptor coactivator 5	protein-coding
238095	chrX	136584371	136584880	+	0	NA	Intergenic	Intergenic	33747	NR_030631	100126324		NR_030631	ENSG00000216060	MIR934	MIRN934|hsa-mir-934|mir-934	microRNA 934	ncRNA
94156	chr17	28364271	28364430	+	0	NA	TTS (NM_001080837)	TTS (NM_001080837)	801	NM_001080837	645832		NM_001080837	ENSG00000274529	SEBOX	OG-9|OG9|OG9X	SEBOX homeobox	protein-coding
112921	chr19	7658171	7658780	+	0	NA	Intergenic	Intergenic	-10574	NM_001385726	56729		NM_020415	ENSG00000104918	RETN	ADSF|FIZZ3|RENT|RETN1|RSTN|XCP1	resistin	protein-coding
128846	chr2	63849601	63849800	+	0	NA	intron (NM_001377529, intron 2 of 11)	intron (NM_001377529, intron 2 of 11)	7804	NM_001377524	7360		NM_006759	ENSG00000169764	UGP2	DEE83|EIEE83|SVUGP2|UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding
105263	chr17	82444801	82445080	+	0	NA	intron (NM_001193654, intron 5 of 6)	intron (NM_001193654, intron 5 of 6)	4786	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
211672	chr7	106282621	106283030	+	0	NA	intron (NM_005746, intron 1 of 10)	intron (NM_005746, intron 1 of 10)	2158	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
121758	chr19	47756171	47756330	+	0	NA	TTS (NR_003048)	TTS (NR_003048)	397	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
116239	chr19	17543921	17544700	+	0	NA	intron (NM_173544, intron 13 of 15)	intron (NM_173544, intron 13 of 15)	-11339	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
122624	chr19	49812571	49814150	+	0	NA	promoter-TSS (NM_001352262)	promoter-TSS (NM_001352262)	-68	NM_001352262	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
52847	chr12	57095501	57095880	+	0	NA	TTS (NM_001330305)	TTS (NM_001330305)	6576	NM_005967	4665		NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding
107431	chr18	46208821	46209080	+	0	NA	intron (NM_145055, intron 1 of 4)	intron (NM_145055, intron 1 of 4)	34916	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
147380	chr20	58621971	58622130	+	0	NA	Intergenic	Intergenic	-12722	NR_125359	79160		NM_024314	ENSG00000268941	LINC01711	-	long intergenic non-protein coding RNA 1711	ncRNA
148814	chr21	8258601	8260900	+	0	NA	non-coding (NR_003287, exon 2 of 3)	non-coding (NR_003287, exon 2 of 3)	2969	NR_146120	109864274		NR_146120		RNA5-8SN4	RN5-8S1|RNA5-8S5	RNA, 5.8S ribosomal N4	rRNA
16836	chr1	155664201	155664530	+	0	NA	intron (NM_139119, intron 9 of 10)	intron (NM_139119, intron 9 of 10)	14890	NR_132762	106633810		NR_132762		SCARNA26A	-	small Cajal body-specific RNA 26A	ncRNA
89316	chr16	88726201	88726600	+	0	NA	exon (NM_001142864, exon 27 of 51)	exon (NM_001142864, exon 27 of 51)	-4780	NR_103774	100289580		NM_207451		HSALR1	-	HSP90AB1 associated lncRNA 1	ncRNA
142408	chr20	3885851	3886150	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-2781	NM_024960	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
155691	chr22	39079201	39079580	+	0	NA	intron (NM_001349436, intron 2 of 7)	AluSq2|SINE|Alu	2115	NM_001349438	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
115611	chr19	16071851	16071950	+	0	NA	intron (NM_001367836, intron 1 of 8)	intron (NM_001367836, intron 1 of 8)	4362	NM_001367836	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
192026	chr6	16435701	16435900	+	0	NA	intron (NM_000332, intron 7 of 8)	MIRb|SINE|MIR	197213	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
53888	chr12	70577101	70577300	+	0	NA	intron (NM_001206972, intron 8 of 30)	intron (NM_001206972, intron 8 of 30)	32824	NM_002837	5787		NM_002837	ENSG00000127329	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase receptor type B	protein-coding
42106	chr11	67586901	67587580	+	0	NA	TTS (NM_000852)	TTS (NM_000852)	3428	NM_000852	2950		NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
220645	chr8	101067001	101067210	+	0	NA	intron (NR_033962, intron 2 of 2)	intron (NR_033962, intron 2 of 2)	15051	NR_033962	441374		NR_033962	ENSG00000248599	SLEAR	-	STAT1 regulated ILF2 complex interacting lncRNA	ncRNA
178451	chr4	148054201	148054900	+	0	NA	intron (NM_024605, intron 20 of 22)	intron (NM_024605, intron 20 of 22)	271955	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
41502	chr11	66251801	66252200	+	0	NA	Intergenic	Intergenic	-5294	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
24152	chr1	235857751	235857850	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	-4740	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
55324	chr12	103934901	103935450	+	0	NA	intron (NM_003299, intron 5 of 17)	intron (NM_003299, intron 5 of 17)	4750	NR_037425	100500842		NR_037425	ENSG00000284503	MIR3652	-	microRNA 3652	ncRNA
49629	chr12	28194601	28194800	+	0	NA	intron (NM_001352087, intron 1 of 10)	LTR12D|LTR|ERV1	-3962	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
46068	chr11	122747151	122747530	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	-91160	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
184385	chr5	98856001	98856800	+	0	NA	exon (NM_001376194, exon 36 of 36)	exon (NM_001376194, exon 36 of 36)	-72162	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
122723	chr19	50003071	50003510	+	0	NA	intron (NM_001308420, intron 5 of 12)	MLT1D|LTR|ERVL-MaLR	22082	NM_001308420	51231		NM_016440	ENSG00000105053	VRK3	-	VRK serine/threonine kinase 3	protein-coding
87444	chr16	70750601	70750800	+	0	NA	intron (NM_001351157, intron 11 of 17)	intron (NM_001351157, intron 11 of 17)	-4395	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
8181	chr1	39562351	39563150	+	0	NA	intron (NM_003819, intron 12 of 15)	intron (NM_003819, intron 12 of 15)	-2320	NR_125979	101929516		NR_125979		PABPC4-AS1	-	PABPC4 antisense RNA 1	ncRNA
196915	chr6	52381051	52381480	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	19114	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
141884	chr20	769771	770130	+	0	NA	intron (NM_001370085, intron 1 of 5)	MLT1J|LTR|ERVL-MaLR	-1450	NM_033409	113278		NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
182506	chr5	65021471	65022080	+	0	NA	Intergenic	Intergenic	252845	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
125914	chr2	24930801	24931180	+	0	NA	Intergenic	Intergenic	-10753	NM_001320613	109		NM_004036	ENSG00000138031	ADCY3	AC-III|AC3|BMIQ19	adenylate cyclase 3	protein-coding
145690	chr20	45010721	45011900	+	0	NA	intron (NM_006282, intron 9 of 10)	intron (NM_006282, intron 9 of 10)	44798	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
218568	chr8	54554321	54554580	+	0	NA	Intergenic	Intergenic	-4735	NM_001375654	6101		NM_006269	ENSG00000104237	RP1	DCDC4A|ORP1	RP1 axonemal microtubule associated	protein-coding
53181	chr12	59598901	59599100	+	0	NA	intron (NM_001270622, intron 1 of 5)	MIR|SINE|MIR	2971	NM_001270622	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
62916	chr13	111067171	111068130	+	0	NA	Intergenic	CpG	-28188	NR_120415	101927802		NR_120415		LINC00368	-	long intergenic non-protein coding RNA 368	ncRNA
73711	chr15	45129721	45130630	+	0	NA	promoter-TSS (NM_001276268)	promoter-TSS (NM_001276268)	181	NM_017434	53905		NM_017434	ENSG00000137857	DUOX1	LNOX1|NOXEF1|THOX1	dual oxidase 1	protein-coding
157381	chr22	44723971	44724130	+	0	NA	intron (NM_001017530, intron 2 of 7)	Tigger6a|DNA|TcMar-Tigger	21846	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
63661	chr14	21024511	21025950	+	0	NA	promoter-TSS (NM_001282213)	promoter-TSS (NM_001282213)	-125	NM_201540	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
89123	chr16	88502971	88503130	+	0	NA	intron (NM_153813, intron 3 of 9)	CpG	28003	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
64811	chr14	34984571	34984730	+	0	NA	intron (NM_001146282, intron 1 of 14)	AluSx1|SINE|Alu	1658	NM_003136	6729		NM_003136	ENSG00000100883	SRP54	SCN8	signal recognition particle 54	protein-coding
44908	chr11	115216401	115216600	+	0	NA	intron (NM_001301043, intron 6 of 11)	intron (NM_001301043, intron 6 of 11)	-117077	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
60530	chr13	41450801	41451400	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-6450	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
90874	chr17	2379401	2379700	+	0	NA	3' UTR (NM_001098509, exon 23 of 23)	3' UTR (NM_001098509, exon 23 of 23)	21510	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
48889	chr12	12502071	12502630	+	0	NA	intron (NM_030640, intron 3 of 6)	intron (NM_030640, intron 3 of 6)	60513	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
184559	chr5	102765471	102765850	+	0	NA	intron (NM_001364588, intron 1 of 24)	MLT1C|LTR|ERVL-MaLR	10355	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
38817	chr11	47295071	47295230	+	0	NA	non-coding (NR_164842, exon 22 of 34)	non-coding (NR_164842, exon 22 of 34)	-23040	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
8672	chr1	41899571	41899730	+	0	NA	intron (NR_038260, intron 1 of 2)	intron (NR_038260, intron 1 of 2)	19272	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
6959	chr1	31766451	31766950	+	0	NA	Intergenic	Intergenic	-2360	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
179704	chr4	190175071	190175450	+	0	NA	non-coding (NR_137167, exon 2 of 6).2	non-coding (NR_137167, exon 2 of 6).2	1486	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
203419	chr7	266321	266580	+	0	NA	Intergenic	Intergenic	-23720	NM_001374838	116033993		NM_001374838	ENSG00000248767	FOXL3	-	forkhead box L3	protein-coding
133417	chr2	118858701	118859050	+	0	NA	Intergenic	CpG	-11227	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
68579	chr14	89433151	89433450	+	0	NA	intron (NM_001085471, intron 1 of 6)	AluSx4|SINE|Alu	15946	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
117758	chr19	29675671	29676180	+	0	NA	TTS (NM_024310)	TTS (NM_024310)	10464	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
140882	chr2	237614021	237614480	+	0	NA	Intergenic	Intergenic	-13337	NM_001137550	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
206477	chr7	33042921	33043180	+	0	NA	intron (NM_001374336, intron 1 of 10)	MIR|SINE|MIR	-2144	NM_001166118	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
107347	chr18	45848951	45849250	+	0	NA	3' UTR (NM_020964, exon 44 of 44)	3' UTR (NM_020964, exon 44 of 44)	23425	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
237349	chrX	118552621	118552880	+	0	NA	intron (NM_144658, intron 6 of 52)	AluJo|SINE|Alu	56841	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
136479	chr2	177219001	177219200	+	0	NA	exon (NM_001330247, exon 9 of 11)	exon (NM_001330247, exon 9 of 11)	6306	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
230721	chr9	128811571	128812130	+	0	NA	Intergenic	AluJr|SINE|Alu	-6650	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
183363	chr5	77156571	77157230	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-23404	NM_001349752	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
64118	chr14	22835051	22835150	+	0	NA	TTS (NM_001318870)	TTS (NM_001318870)	-1485	NM_004995	4323		NM_004995	ENSG00000157227	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14	protein-coding
85227	chr16	47643551	47644050	+	0	NA	intron (NM_001031835, intron 17 of 31)	intron (NM_001031835, intron 17 of 31)	182469	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
210773	chr7	100699651	100699950	+	0	NA	Intergenic	L2b|LINE|L2	-5550	NM_001375763	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
116148	chr19	17381501	17381900	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4358	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
107223	chr18	36297371	36298100	+	0	NA	promoter-TSS (NM_001281740)	promoter-TSS (NM_001281740)	22	NM_025135	80206		NM_025135	ENSG00000134775	FHOD3	CMH28|FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
129864	chr2	73069901	73072650	+	0	NA	promoter-TSS (NM_001330404)	promoter-TSS (NM_001330404)	49	NM_001330403	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
2106	chr1	8025451	8027180	+	0	NA	promoter-TSS (NM_018948)	promoter-TSS (NM_018948)	-6	NM_018948	54206		NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
227672	chr9	92986001	92986600	+	0	NA	intron (NM_001369951, intron 3 of 17)	MER50-int|LTR|ERV1	11831	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
51977	chr12	53950351	53950850	+	0	NA	Intergenic	Intergenic	-4303	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
40008	chr11	62650171	62650330	+	0	NA	intron (NM_030628, intron 1 of 1)	AluY|SINE|Alu	3052	NM_030628	80789		NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
187935	chr5	148998151	148998530	+	0	NA	3' UTR (NM_024577, exon 17 of 17)	3' UTR (NM_024577, exon 17 of 17)	64069	NR_030310	693169		NR_030310	ENSG00000207714	MIR584	MIRN584|hsa-mir-584	microRNA 584	ncRNA
102392	chr17	75581021	75582280	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6408	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
216998	chr8	23129571	23130130	+	0	NA	Intergenic	Intergenic	26929	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
133591	chr2	121698801	121700270	+	0	NA	intron (NR_037857, intron 2 of 3)	L2|LINE|L2	37340	NM_032390	84365		NM_032390	ENSG00000155438	NIFK	MKI67IP|Nopp34	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
128391	chr2	55048971	55049800	+	0	NA	promoter-TSS (NM_001321862)	promoter-TSS (NM_001321862)	-229	NM_207521	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
126889	chr2	32280151	32280450	+	0	NA	intron (NM_032312, intron 1 of 5)	AluY|SINE|Alu	2396	NM_032312	84272		NM_032312	ENSG00000119820	YIPF4	FinGER4|Nbla11189|YIPFalpha2	Yip1 domain family member 4	protein-coding
21689	chr1	206723871	206724500	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	39280	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
92958	chr17	17052571	17053100	+	0	NA	intron (NM_015134, intron 1 of 22)	intron (NM_015134, intron 1 of 22)	10378	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
41706	chr11	66646621	66647280	+	0	NA	TTS (NM_001198845)	TTS (NM_001198845)	8247	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
25681	chr10	8430071	8430230	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-161845	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
220971	chr8	115241471	115241730	+	0	NA	Intergenic	MER74B|LTR|ERVL	426413	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
156070	chr22	40009351	40010530	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	14986	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
119655	chr19	40823471	40823650	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-12460	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
160108	chr3	19811851	19811950	+	0	NA	Intergenic	MER61D|LTR|ERV1	122317	NM_144715	151651		NM_144715	ENSG00000163576	EFHB	CFAP21	EF-hand domain family member B	protein-coding
179953	chr5	781851	782550	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	2529	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
154931	chr22	37218371	37219750	+	0	NA	Intergenic	L1M7|LINE|L1	-6583	NM_001051	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
144930	chr20	37000471	37001350	+	0	NA	intron (NM_001323281, intron 20 of 20)	SVA_D|Retroposon|SVA	-49202	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
161795	chr3	45166951	45167800	+	0	NA	Intergenic	Intergenic	-20953	NM_178181	64866		NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
124168	chr19	56114971	56115330	+	0	NA	intron (NM_001351682, intron 1 of 1)	intron (NM_001351682, intron 1 of 1)	6145	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
13853	chr1	117660821	117661950	+	0	NA	Intergenic	Intergenic	55337	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
12333	chr1	101043851	101043950	+	0	NA	intron (NR_109849, intron 1 of 4)	L2c|LINE|L2	18054	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
45920	chr11	120869501	120869700	+	0	NA	non-coding (NR_132790, exon 2 of 2)	non-coding (NR_132790, exon 2 of 2)	25197	NR_132790	101929227		NR_132790	ENSG00000250493	LOC101929227	-	uncharacterized LOC101929227	ncRNA
109882	chr19	1254971	1255130	+	0	NA	exon (NM_177401, exon 6 of 8)	exon (NM_177401, exon 6 of 8)	6497	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
210674	chr7	100542321	100543180	+	0	NA	intron (NM_006076, intron 1 of 11)	intron (NM_006076, intron 1 of 11)	3547	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
89788	chr16	89484991	89486630	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	4751	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
119905	chr19	41577221	41577680	+	0	NA	exon (NM_001098506, exon 2 of 7)	exon (NM_001098506, exon 2 of 7)	1284	NM_001098506	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
182702	chr5	68224601	68225080	+	0	NA	intron (NM_181523, intron 1 of 15)	intron (NM_181523, intron 1 of 15)	9084	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
38034	chr11	35149421	35150130	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	10604	NM_001001391	960		NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECM-III|ECMR-III|H-CAM|HCELL|HUTCH-1|HUTCH-I|Hermes-1|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (IN blood group)	protein-coding
146071	chr20	47502801	47504180	+	0	NA	intron (NM_181659, intron 1 of 22)	L1ME4b|LINE|L1	1603	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
97613	chr17	44136701	44136900	+	0	NA	Intergenic	AluSp|SINE|Alu	-5130	NM_001171251	78995		NM_024032	ENSG00000125319	HROB	C17orf53|MCM8IP	homologous recombination factor with OB-fold	protein-coding
11305	chr1	89284271	89284700	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	5877	NR_077244	729930		NR_077244		LOC729930	-	intraflagellar transport associated protein pseudogene	pseudo
179603	chr4	185440951	185441050	+	0	NA	intron (NM_001346007, intron 3 of 4)	AluSx|SINE|Alu	11666	NM_001346007	441054		NM_001114357	ENSG00000205129	CFAP96	C4orf47	cilia and flagella associated protein 96	protein-coding
189379	chr5	172712721	172713800	+	0	NA	Intergenic	Intergenic	-42243	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
83442	chr16	27312851	27312950	+	0	NA	Intergenic	L2a|LINE|L2	-1074	NM_001257406	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
220308	chr8	98364801	98365000	+	0	NA	Intergenic	LTR33|LTR|ERVL	28838	NR_162095	113218497		NR_162095		MIR9903	-	microRNA 9903	ncRNA
152502	chr22	20934901	20935100	+	0	NA	intron (NR_156180, intron 2 of 3)	AluY|SINE|Alu	17593	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
190413	chr5	179820301	179821200	+	0	NA	promoter-TSS (NM_003900).2	promoter-TSS (NM_003900).2	-155	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
11456	chr1	89870621	89871180	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	48961	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
216966	chr8	23019001	23020280	+	0	NA	TTS (NM_003842)	TTS (NM_003842)	20092	NM_015178	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
137324	chr2	196079801	196080000	+	0	NA	Intergenic	Intergenic	-11063	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
51624	chr12	52949851	52950100	+	0	NA	promoter-TSS (NM_001256293)	promoter-TSS (NM_001256293)	-115	NR_045962	3856		NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
29244	chr10	69100501	69101050	+	0	NA	intron (NM_002727, intron 2 of 2)	LTR33A_|LTR|ERVL	12672	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
131820	chr2	98631421	98631680	+	0	NA	intron (NM_001160154, intron 11 of 12)	LTR1|LTR|ERV1	22961	NM_001330353	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
189073	chr5	170275241	170276180	+	0	NA	intron (NM_005565, intron 4 of 20)	intron (NM_005565, intron 4 of 20)	22067	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
224690	chr9	21331401	21332250	+	0	NA	3' UTR (NM_018847, exon 1 of 1)	3' UTR (NM_018847, exon 1 of 1)	3579	NM_018847	55958		NM_018847	ENSG00000198642	KLHL9	-	kelch like family member 9	protein-coding
20011	chr1	185295271	185295830	+	0	NA	TTS (NM_006469)	TTS (NM_006469)	21693	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
49321	chr12	21659371	21660030	+	0	NA	Intergenic	L1M6|LINE|L1	-1845	NM_001315537	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
124196	chr19	56314001	56316100	+	0	NA	promoter-TSS (NM_001322076)	promoter-TSS (NM_001322076)	-211	NM_001322078	79149		NM_024303	ENSG00000131848	ZSCAN5A	ZNF495|ZSCAN5	zinc finger and SCAN domain containing 5A	protein-coding
193995	chr6	31775151	31775880	+	0	NA	intron (NM_025258, intron 3 of 16).6	intron (NM_025258, intron 3 of 16).6	1813	NM_025258	80737		NM_025258	ENSG00000204396	VWA7	C6orf27|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding
218792	chr8	59015121	59015580	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	103797	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
165534	chr3	100662321	100662590	+	0	NA	intron (NM_001308362, intron 8 of 9)	intron (NM_001308362, intron 8 of 9)	26917	NM_001308362	84873		NM_032787	ENSG00000144820	ADGRG7	GPR128	adhesion G protein-coupled receptor G7	protein-coding
181048	chr5	36079201	36079630	+	0	NA	Intergenic	L1PA17|LINE|L1	-12533	NR_031764	167127		NM_174914	ENSG00000168671	UGT3A2	-	UDP glycosyltransferase family 3 member A2	protein-coding
102143	chr17	75091171	75091330	+	0	NA	intron (NM_001369668, intron 1 of 5)	intron (NM_001369668, intron 1 of 5)	3296	NM_004695	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
26313	chr10	15090671	15090830	+	0	NA	Intergenic	Intergenic	-1974	NM_001039844	414149		NM_001039844	ENSG00000176244	ACBD7	bA455B2.2	acyl-CoA binding domain containing 7	protein-coding
31962	chr10	100733271	100733900	+	0	NA	Intergenic	Intergenic	-1811	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
82066	chr16	13931801	13932060	+	0	NA	intron (NM_005236, intron 5 of 10)	Charlie1a|DNA|hAT-Charlie	11776	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
65559	chr14	51936421	51936880	+	0	NA	intron (NM_053064, intron 2 of 3)	AluJr|SINE|Alu	-18079	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
61551	chr13	60435501	60435980	+	0	NA	intron (NM_001146070, intron 1 of 13)	L1PB2|LINE|L1	38520	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
70285	chr14	101759151	101759450	+	0	NA	Intergenic	L2c|LINE|L2	-1273	NM_001352914	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
202993	chr6	162825621	162825930	+	0	NA	intron (NM_001080378, intron 3 of 5)	intron (NM_001080378, intron 3 of 5)	97805	NM_001080379	135138		NM_152410	ENSG00000112530	PACRG	BUG21|GLUP|HAK005771|PACRG2.1|PARK2CRG|pf12	parkin coregulated	protein-coding
52426	chr12	55820321	55820980	+	0	NA	TTS (NM_032364)	TTS (NM_032364)	2609	NM_014182	29095		NM_014182	ENSG00000123353	ORMDL2	HSPC160|MST095|MSTP095|adoplin-2	ORMDL sphingolipid biosynthesis regulator 2	protein-coding
86801	chr16	67830221	67830480	+	0	NA	intron (NM_025082, intron 11 of 15)	intron (NM_025082, intron 11 of 15)	-11970	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
12654	chr1	109265071	109265230	+	0	NA	intron (NM_001408, intron 12 of 33)	intron (NM_001408, intron 12 of 33)	15611	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
86495	chr16	67028301	67030830	+	0	NA	intron (NM_022845, intron 1 of 5)	CpG	416	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
108075	chr18	59905951	59906600	+	0	NA	Intergenic	Intergenic	6279	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
224946	chr9	33038001	33038480	+	0	NA	intron (NM_001314039, intron 7 of 7)	AluSx1|SINE|Alu	12967	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
148257	chr20	63657051	63657150	+	0	NA	promoter-TSS (NM_001283010)	promoter-TSS (NM_001283010)	-710	NM_001283010	51750		NM_015647	ENSG00000258366	RTEL1	C20orf41|DKCA4|DKCB5|NHL|PFBMFT3|RTEL	regulator of telomere elongation helicase 1	protein-coding
154759	chr22	36510971	36512180	+	0	NA	exon (NM_003753, exon 14 of 15)	exon (NM_003753, exon 14 of 15)	-4535	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
24911	chr10	1058151	1058500	+	0	NA	intron (NM_014023, intron 1 of 13)	MIRb|SINE|MIR	-1621	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
77221	chr15	81106501	81106780	+	0	NA	Intergenic	Intergenic	-27630	NM_001353365	161502		NM_173528	ENSG00000156206	CFAP161	C15orf26	cilia and flagella associated protein 161	protein-coding
168941	chr3	152366051	152366600	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-25335	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
86460	chr16	66938271	66938500	+	0	NA	intron (NM_198061, intron 2 of 11)	MIRb|SINE|MIR	2869	NM_198061	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
37411	chr11	17274701	17274930	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-1899	NM_001352666	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
237043	chrX	103210951	103211500	+	0	NA	Intergenic	MER66C|LTR|ERV1	-3867	NM_001127688	56271		NM_001080425	ENSG00000102409	BEX4	BEXL1	brain expressed X-linked 4	protein-coding
183069	chr5	73564021	73564280	+	0	NA	intron (NM_023039, intron 1 of 8)	intron (NM_023039, intron 1 of 8)	1489	NM_023039	57763		NM_023039	ENSG00000164331	ANKRA2	ANKRA	ankyrin repeat family A member 2	protein-coding
221291	chr8	122944321	122944580	+	0	NA	intron (NM_001362797, intron 3 of 4)	intron (NM_001362797, intron 3 of 4)	81322	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
56020	chr12	110384121	110384930	+	0	NA	intron (NM_016238, intron 6 of 10)	AluSg7|SINE|Alu	17424	NM_001385210	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
153239	chr22	23979551	23980230	+	0	NA	promoter-TSS (NR_126445).2	promoter-TSS (NR_126445).2	-62	NM_001355	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
54299	chr12	89375801	89376630	+	0	NA	Intergenic	Intergenic	-23714	NM_001946	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
86108	chr16	57658001	57658200	+	0	NA	intron (NM_001370440, intron 11 of 14)	intron (NM_001370440, intron 11 of 14)	-10206	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
15573	chr1	150562801	150565050	+	0	NA	intron (NR_104133, intron 2 of 3)	intron (NR_104133, intron 2 of 3)	10627	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
3681	chr1	16501021	16501480	+	0	NA	Intergenic	Intergenic	-8549	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
223271	chr8	143720771	143721180	+	0	NA	intron (NM_139021, intron 9 of 13)	intron (NM_139021, intron 9 of 13)	4626	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
189346	chr5	172185701	172186200	+	0	NA	intron (NM_005990, intron 1 of 18)	intron (NM_005990, intron 1 of 18)	2274	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
218547	chr8	54020601	54020800	+	0	NA	intron (NM_006756, intron 1 of 9)	MIRc|SINE|MIR	1748	NM_006756	6917		NM_006756	ENSG00000187735	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A1	protein-coding
78074	chr15	90202871	90203100	+	0	NA	intron (NM_001324034, intron 1 of 13)	MIR|SINE|MIR	1655	NM_001324033								
150751	chr21	43775471	43777400	+	0	NA	promoter-TSS (NM_000100)	promoter-TSS (NM_000100)	-127	NM_000100	1476		NM_000100	ENSG00000160213	CSTB	CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD	cystatin B	protein-coding
99963	chr17	57463301	57463500	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	60197	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
37150	chr11	13551801	13552000	+	0	NA	Intergenic	Intergenic	-55725	NM_001316352	5741		NM_000315	ENSG00000152266	PTH	FIH1|PTH1	parathyroid hormone	protein-coding
196103	chr6	42366101	42366500	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	85751	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
161822	chr3	45596221	45598230	+	0	NA	intron (NM_014240, intron 1 of 7)	MER5A|DNA|hAT-Charlie	2474	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
12215	chr1	100401801	100402150	+	0	NA	intron (NM_001319210, intron 4 of 16)	AluSp|SINE|Alu	49469	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
88727	chr16	86016321	86016600	+	0	NA	Intergenic	Intergenic	98113	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
66012	chr14	58258051	58258630	+	0	NA	intron (NM_152132, intron 5 of 10)	AluJr|SINE|Alu	13497	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
216612	chr8	22065971	22067430	+	0	NA	5' UTR (NM_001323381, exon 1 of 15)	5' UTR (NM_001323381, exon 1 of 15)	184	NM_001323400	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
175101	chr4	54230751	54231200	+	0	NA	intron (NM_006206, intron 1 of 22)	CpG	1682	NM_006206	5156		NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
8740	chr1	42694671	42695280	+	0	NA	intron (NR_132737, intron 2 of 6)	Tigger19b|DNA|TcMar-Tigger	11839	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
192299	chr6	20837151	20837900	+	0	NA	intron (NM_017774, intron 8 of 15)	intron (NM_017774, intron 8 of 15)	303068	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
52648	chr12	56292771	56292930	+	0	NA	intron (NM_004077, intron 1 of 10)	AluY|SINE|Alu	7480	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
169833	chr3	177156951	177157280	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluJb|SINE|Alu	39363	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
20640	chr1	199941551	199942150	+	0	NA	Intergenic	UCON37|Unknown|Unknown	-85860	NM_003822	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
140750	chr2	234486851	234487150	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	10049	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
4105	chr1	19260351	19260650	+	0	NA	TTS (NM_016183)	TTS (NM_016183)	8695	NM_016183	51154		NM_016183	ENSG00000053372	MRTO4	C1orf33|MRT4|dJ657E11.4	MRT4 homolog, ribosome maturation factor	protein-coding
47945	chr12	6835571	6836700	+	0	NA	intron (NM_014262, intron 9 of 14)	AluJb|SINE|Alu	-4790	NM_001297571	2784		NM_002075	ENSG00000111664	GNB3	CSNB1H|HG2D	G protein subunit beta 3	protein-coding
134643	chr2	144437071	144437230	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-82464	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
40173	chr11	62890421	62890700	+	0	NA	Intergenic	AluY|SINE|Alu	8861	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
183110	chr5	74639651	74640100	+	0	NA	promoter-TSS (NM_001292004)	promoter-TSS (NM_001292004)	-148	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
96304	chr17	39958101	39958300	+	0	NA	Intergenic	Intergenic	-4804	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
105328	chr17	82591601	82592200	+	0	NA	intron (NM_004514, intron 8 of 8)	intron (NM_004514, intron 8 of 8)	56544	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
53687	chr12	68462621	68463280	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	-11466	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
23979	chr1	235208501	235208700	+	0	NA	intron (NM_031371, intron 16 of 22)	AluSp|SINE|Alu	-18484	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
237376	chrX	119273401	119274050	+	0	NA	Intergenic	Intergenic	-17804	NR_110396	101928336		NR_110396	ENSG00000230392	LINC03098	-	long intergenic non-protein coding RNA 3098	ncRNA
136446	chr2	176830351	176830680	+	0	NA	Intergenic	(TTGAGCT)n|Simple_repeat|Simple_repeat	192761	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
157702	chr22	46373071	46373590	+	0	NA	intron (NM_001378328, intron 24 of 34)	intron (NM_001378328, intron 24 of 34)	37616	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
191975	chr6	16153701	16154400	+	0	NA	Intergenic	Intergenic	12494	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
123455	chr19	54148201	54149250	+	0	NA	exon (NM_014516, exon 12 of 18).8	exon (NM_014516, exon 12 of 18).8	10963	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
134744	chr2	144636721	144637380	+	0	NA	Intergenic	L1PA7|LINE|L1	-30917	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
127090	chr2	37599551	37600950	+	0	NA	Intergenic	L1PA6|LINE|L1	71392	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
3212	chr1	13761671	13762130	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	12485	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
106553	chr18	21616051	21616350	+	0	NA	intron (NM_001291916, intron 1 of 3)	AluY|SINE|Alu	3886	NM_006938	6632		NM_006938	ENSG00000167088	SNRPD1	HsT2456|SMD1|SNRPD|Sm-D1	small nuclear ribonucleoprotein D1 polypeptide	protein-coding
143813	chr20	32474951	32475450	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	8290	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
152935	chr22	22816571	22817050	+	0	NA	Intergenic	Intergenic	-5966	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
109750	chr19	1112251	1112550	+	0	NA	intron (NM_001100122, intron 18 of 28).2	CpG	7750	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
195236	chr6	36285301	36285500	+	0	NA	intron (NM_001374623, intron 1 of 8)	intron (NM_001374623, intron 1 of 8)	14940	NM_001145717	285848		NM_173676	ENSG00000180316	PNPLA1	ARCI10|dJ50J22.1	patatin like phospholipase domain containing 1	protein-coding
59170	chr13	21675001	21676050	+	0	NA	intron (NM_002010, intron 1 of 2)	CpG	4452	NM_002010	2254		NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
197944	chr6	89925521	89925980	+	0	NA	TTS (NM_001170794)	TTS (NM_001170794)	31281	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
225637	chr9	36334201	36334680	+	0	NA	Intergenic	AluSx|SINE|Alu	-57462	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
171430	chr3	196259851	196259950	+	0	NA	intron (NM_005017, intron 3 of 9)	intron (NM_005017, intron 3 of 9)	27826	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
41223	chr11	65709901	65710100	+	0	NA	Intergenic	MER41A|LTR|ERV1	-2252	NM_182710	10524		NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|NEDFASB|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
86073	chr16	57609471	57610450	+	0	NA	Intergenic	Intergenic	-9778	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
32708	chr10	104121501	104122700	+	0	NA	promoter-TSS (NM_145247)	promoter-TSS (NM_145247)	-8	NM_145247	119392		NM_145247	ENSG00000156384	SFR1	C10orf78|MEI5|MEIR5|bA373N18.1	SWI5 dependent homologous recombination repair protein 1	protein-coding
176315	chr4	87425871	87426030	+	0	NA	intron (NM_024047, intron 1 of 7)	AluJr|SINE|Alu	3353	NM_198038	53343		NM_024047	ENSG00000170502	NUDT9	NUDT10	nudix hydrolase 9	protein-coding
27604	chr10	32889821	32890380	+	0	NA	Intergenic	Intergenic	11372	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
33517	chr10	119199321	119199730	+	0	NA	Intergenic	Intergenic	-8046	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
43589	chr11	83119301	83119500	+	0	NA	Intergenic	MIRb|SINE|MIR	-37731	NM_001346414	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
165086	chr3	71485651	71486100	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	56214	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
80902	chr16	3729371	3729530	+	0	NA	exon (NM_001079846, exon 30 of 30)	exon (NM_001079846, exon 30 of 30)	-11926	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
197022	chr6	53331951	53332250	+	0	NA	intron (NM_001242830, intron 1 of 6)	MSTB1|LTR|ERVL-MaLR	5517	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
153167	chr22	23798951	23799250	+	0	NA	intron (NM_003073, intron 3 of 8).2	intron (NM_003073, intron 3 of 8).2	12134	NM_001007468	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
128897	chr2	64140601	64141100	+	0	NA	intron (NM_020651, intron 1 of 6)	intron (NM_020651, intron 1 of 6)	3570	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
163775	chr3	52382451	52382550	+	0	NA	intron (NM_015512, intron 50 of 77)	intron (NM_015512, intron 50 of 77)	27508	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
119532	chr19	40574921	40575200	+	0	NA	intron (NM_020971, intron 35 of 35)	MIR|SINE|MIR	-1813	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
80371	chr16	2527971	2528380	+	0	NA	intron (NM_001330449, intron 6 of 10)	CpG-9108	3233	NM_001048212	752014		NM_001048212	ENSG00000205923	CEMP1	CP-23|CP23	cementum protein 1	protein-coding
56365	chr12	113135521	113136450	+	0	NA	promoter-TSS (NM_001193521)	promoter-TSS (NM_001193521)	-231	NM_001193521	8437		NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
55102	chr12	98500951	98501450	+	0	NA	intron (NR_038383, intron 2 of 3)	AluSq2|SINE|Alu	2655	NR_038383	643770		NR_038383	ENSG00000245017	LINC02453	-	long intergenic non-protein coding RNA 2453	ncRNA
87483	chr16	71786521	71786980	+	0	NA	intron (NM_001128, intron 2 of 22)	AluSc|SINE|Alu	22084	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
224979	chr9	33086001	33086200	+	0	NA	Intergenic	L1PA5|LINE|L1	-9426	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
125563	chr2	15943971	15944130	+	0	NA	intron (NM_005378, intron 2 of 2)	intron (NM_005378, intron 2 of 2)	-1617	NR_161163	10408		NR_110230	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	ncRNA
111523	chr19	4012721	4013450	+	0	NA	exon (NM_015897, exon 2 of 11)	exon (NM_015897, exon 2 of 11)	5349	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
86286	chr16	58609251	58609550	+	0	NA	intron (NM_206999, intron 1 of 30)	AluSg|SINE|Alu	20426	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
63879	chr14	21768151	21768930	+	0	NA	Intergenic	Intergenic	-97523	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
70496	chr14	102098171	102098330	+	0	NA	intron (NM_001017963, intron 2 of 11)	AluSx4|SINE|Alu	-11206	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
150939	chr21	44288751	44289050	+	0	NA	intron (NM_000383, intron 5 of 13)	intron (NM_000383, intron 5 of 13)	3024	NM_000383	326		NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
110626	chr19	2216471	2217180	+	0	NA	intron (NM_032482, intron 20 of 27)	intron (NM_032482, intron 20 of 27)	17324	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
131571	chr2	96818571	96818880	+	0	NA	intron (NM_199078, intron 1 of 6)	OldhAT1|DNA|hAT-Ac	2457	NM_017623	26505		NM_017623	ENSG00000168763	CNNM3	ACDP3	cyclin and CBS domain divalent metal cation transport mediator 3	protein-coding
187502	chr5	142350321	142351000	+	0	NA	intron (NR_120664, intron 2 of 3)	AluY|SINE|Alu	25367	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
56390	chr12	113187451	113188300	+	0	NA	intron (NM_001286215, intron 2 of 2)	(TTAGA)n|Simple_repeat|Simple_repeat	2154	NM_032848	84934		NM_032848	ENSG00000139405	RITA1	C12orf52|RITA	RBPJ interacting and tubulin associated 1	protein-coding
145997	chr20	46404071	46404630	+	0	NA	intron (NM_001318253, intron 1 of 21)	intron (NM_001318253, intron 1 of 21)	2265	NM_001318253	63916		NM_022086	ENSG00000062598	ELMO2	CED-12|CED12|Ced-12A|ELMO-2|VMPI	engulfment and cell motility 2	protein-coding
210120	chr7	98134051	98134150	+	0	NA	intron (NM_014916, intron 1 of 13)	MIRb|SINE|MIR	27238	NM_014916	22853		NM_014916	ENSG00000164715	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK	lemur tyrosine kinase 2	protein-coding
104727	chr17	81642321	81642580	+	0	NA	intron (NM_031945, intron 2 of 3)	intron (NM_031945, intron 2 of 3)	145	NR_110866	83882		NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
26235	chr10	14594151	14595050	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	9801	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
234729	chrX	21940151	21942100	+	0	NA	intron (NM_004595, intron 1 of 10)	CpG	416	NM_004595	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
84002	chr16	29453371	29453530	+	0	NA	TTS (NM_001039182)	TTS (NM_001039182)	755	NR_135304	552900		NM_001031827	ENSG00000183336	BOLA2	BOLA2A|BOLA2B|My016	bolA family member 2	protein-coding
218825	chr8	59117301	59118400	+	0	NA	intron (NM_014729, intron 1 of 8)	CpG	1297	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
166418	chr3	113731671	113731830	+	0	NA	intron (NM_025146, intron 1 of 4)	L1MB7|LINE|L1	14499	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
69154	chr14	92575701	92576100	+	0	NA	promoter-TSS (NM_001319987)	promoter-TSS (NM_001319987)	-334	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
75542	chr15	66705001	66705350	+	0	NA	intron (NM_005585, intron 1 of 3)	intron (NM_005585, intron 1 of 3)	2939	NR_027654	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
32342	chr10	102267371	102267730	+	0	NA	intron (NR_165087, intron 3 of 38)	intron (NR_165087, intron 3 of 38)	22018	NR_165088	8729		NM_004193	ENSG00000107862	GBF1	ARF1GEF|CMT2GG|CMTDI2|CMTDIA	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
88915	chr16	87816421	87816680	+	0	NA	Intergenic	Intergenic	18110	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
235512	chrX	47189301	47189650	+	0	NA	Intergenic	AluSx|SINE|Alu	-1372	NM_153280	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
92241	chr17	7912001	7912200	+	0	NA	3' UTR (NM_001005273, exon 40 of 40)	3' UTR (NM_001005273, exon 40 of 40)	4189	NM_001358699	284023		NM_001358699	ENSG00000179859	RNF227	LINC02581	ring finger protein 227	protein-coding
193482	chr6	30543821	30544200	+	0	NA	3' UTR (NM_005275, exon 12 of 12)	3' UTR (NM_005275, exon 12 of 12)	-12699	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
128436	chr2	55517321	55517730	+	0	NA	Intergenic	Intergenic	-2070	NM_001282761	112942		NM_080667	ENSG00000163001	CFAP36	BARTL1|CCDC104	cilia and flagella associated protein 36	protein-coding
190295	chr5	179594101	179594300	+	0	NA	intron (NM_001040452, intron 11 of 17).2	AluSg|SINE|Alu	9541	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
166685	chr3	120351551	120351650	+	0	NA	Intergenic	L2a|LINE|L2	-2246	NM_001099678	116064		NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
180551	chr5	14665721	14666600	+	0	NA	intron (NM_138348, intron 1 of 6)	intron (NM_138348, intron 1 of 6)	1442	NM_138348	90268		NM_138348	ENSG00000154124	OTULIN	AIPDS|FAM105B|GUM|IMD107	OTU deubiquitinase with linear linkage specificity	protein-coding
75054	chr15	64161301	64161700	+	0	NA	intron (NM_000942, intron 2 of 4)	AluSq2|SINE|Alu	1522	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
49091	chr12	14460571	14460950	+	0	NA	exon (NM_001286514, exon 9 of 15)	exon (NM_001286514, exon 9 of 15)	75479	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
18553	chr1	162566101	162566300	+	0	NA	exon (NM_001324113, exon 3 of 11)	exon (NM_001324113, exon 3 of 11)	4301	NM_001324114	6675		NM_003115	ENSG00000117143	UAP1	AGX|AGX1|AGX2|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
124072	chr19	55614001	55614200	+	0	NA	exon (NM_001195605, exon 2 of 2)	exon (NM_001195605, exon 2 of 2)	8453	NM_001195605	100507290		NM_001195605	ENSG00000261221	ZNF865	-	zinc finger protein 865	protein-coding
107841	chr18	54265501	54266030	+	0	NA	Intergenic	Intergenic	-3714	NR_147257	11201		NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
112558	chr19	6577371	6577930	+	0	NA	Intergenic	Intergenic	13500	NM_001330332	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
4054	chr1	19045121	19045800	+	0	NA	Intergenic	Intergenic	-88784	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
28029	chr10	43220951	43221850	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	8339	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
69655	chr14	97974171	97974730	+	0	NA	intron (NR_152748, intron 1 of 2)	intron (NR_152748, intron 1 of 2)	3674	NR_015430	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
226534	chr9	72235001	72235200	+	0	NA	intron (NR_147240, intron 10 of 15)	L1M6|LINE|L1	-70336	NR_110952	100507540		NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
96046	chr17	39460701	39462530	+	0	NA	5' UTR (NM_015083, exon 1 of 14)	5' UTR (NM_015083, exon 1 of 14)	129	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
197208	chr6	63637901	63638350	+	0	NA	intron (NM_001290260, intron 1 of 3)	intron (NM_001290260, intron 1 of 3)	1644	NM_001290260	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
55598	chr12	106759821	106760500	+	0	NA	intron (NM_213594, intron 17 of 17)	intron (NM_213594, intron 17 of 17)	-14522	NM_001351363	55188		NM_018157	ENSG00000111785	RIC8B	RIC8|hSyn	RIC8 guanine nucleotide exchange factor B	protein-coding
123329	chr19	53587601	53588080	+	0	NA	Intergenic	AluSx1|SINE|Alu	15657	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
138529	chr2	207481701	207481900	+	0	NA	Intergenic	Intergenic	-48162	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
97533	chr17	44014201	44015280	+	0	NA	intron (NM_001304813, intron 2 of 4)	intron (NM_001304813, intron 2 of 4)	223	NM_032376	84336		NM_032376	ENSG00000091947	TMEM101	-	transmembrane protein 101	protein-coding
208527	chr7	70595701	70596230	+	0	NA	intron (NM_015570, intron 5 of 18)	CpG	-536179	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
64258	chr14	23186871	23187400	+	0	NA	intron (NM_001370218, intron 1 of 15)	intron (NM_001370218, intron 1 of 15)	1814	NM_001370218	100507650		NM_001282322	ENSG00000215277	RNF212B	C14orf164	ring finger protein 212B	protein-coding
153006	chr22	23187101	23187800	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	6941	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
112770	chr19	7450251	7451180	+	0	NA	intron (NM_001367823, intron 15 of 28)	intron (NM_001367823, intron 15 of 28)	11027	NM_001130955	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
133638	chr2	126971371	126972220	+	0	NA	Intergenic	Intergenic	72905	NR_136239	101929926		NM_001322244	ENSG00000237524	TEX51	-	testis expressed 51	protein-coding
76700	chr15	75786251	75786550	+	0	NA	Intergenic	Intergenic	-24085	NR_036198	100423035		NR_036198	ENSG00000284385	MIR4313	-	microRNA 4313	ncRNA
92440	chr17	8463501	8464180	+	0	NA	intron (NM_001025579, intron 9 of 9)	intron (NM_001025579, intron 9 of 9)	27956	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
104671	chr17	81493751	81494050	+	0	NA	Intergenic	Intergenic	18899	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
30098	chr10	73957321	73958080	+	0	NA	Intergenic	AluSx3|SINE|Alu	-34923	NR_160938	414236		NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 putative open reading frame 55	ncRNA
1514	chr1	2863771	2864330	+	0	NA	Intergenic	Intergenic	-63182	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
31796	chr10	98361301	98361500	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	33907	NR_031619	100302133		NR_031619	ENSG00000284415	MIR1287	MIRN1287|hsa-mir-1287|mir-1287	microRNA 1287	ncRNA
161926	chr3	46070401	46071330	+	0	NA	intron (NM_001381860, intron 1 of 3)	L1M2|LINE|L1	14979	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
73924	chr15	50885251	50886210	+	0	NA	Intergenic	AluSc5|SINE|Alu	-22953	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
27105	chr10	27541521	27542400	+	0	NA	non-coding (NR_046172, exon 6 of 6)	non-coding (NR_046172, exon 6 of 6)	37656	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
192434	chr6	24890051	24890500	+	0	NA	intron (NM_001286446, intron 1 of 13)	L1PB4|LINE|L1	-12910	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
26042	chr10	12419251	12419950	+	0	NA	intron (NM_001351032, intron 3 of 11)	intron (NM_001351032, intron 3 of 11)	30618	NM_001351032	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
143286	chr20	25260751	25261430	+	0	NA	intron (NM_002862, intron 2 of 19)	L1P2|LINE|L1	13005	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
315	chr1	976801	977480	+	0	NA	intron (NM_001291366, intron 2 of 3)	CpG	4033	NM_001369898	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
8901	chr1	43944501	43944700	+	0	NA	Intergenic	Intergenic	-2350	NM_014652	9670		NM_014652	ENSG00000117408	IPO13	IMP13|KAP13|LGL2|RANBP13	importin 13	protein-coding
157445	chr22	45242551	45243150	+	0	NA	Intergenic	Intergenic	-1956	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
115348	chr19	15199301	15199680	+	0	NA	intron (NM_000435, intron 1 of 32)	intron (NM_000435, intron 1 of 32)	1505	NM_000435	4854		NM_000435	ENSG00000074181	NOTCH3	CADASIL|CADASIL1|CASIL|IMF2|LMNS	notch receptor 3	protein-coding
184441	chr5	99055121	99055430	+	0	NA	Intergenic	Intergenic	126141	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
229630	chr9	124040621	124041450	+	0	NA	Intergenic	CpG	29267	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
75445	chr15	65818571	65820130	+	0	NA	Intergenic	Intergenic	-27057	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
235759	chrX	49000401	49000800	+	0	NA	intron (NM_020137, intron 1 of 25)	AluSz|SINE|Alu	1664	NM_020137	56850		NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
105757	chr18	2766071	2766550	+	0	NA	intron (NM_015295, intron 37 of 47)	intron (NM_015295, intron 37 of 47)	-80696	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
129136	chr2	65350971	65351330	+	0	NA	intron (NM_181784, intron 1 of 5)	intron (NM_181784, intron 1 of 5)	15628	NM_001128210	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
163144	chr3	50144321	50144580	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-10608	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
176586	chr4	98908171	98908330	+	0	NA	intron (NM_001130679, intron 1 of 7)	intron (NM_001130679, intron 1 of 7)	20883	NM_001130678	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
187987	chr5	149520351	149520650	+	0	NA	intron (NM_001892, intron 3 of 9)	intron (NM_001892, intron 3 of 9)	29865	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
101270	chr17	66351021	66351280	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	48537	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
27498	chr10	32266801	32267680	+	0	NA	TTS (NM_001382754)	TTS (NM_001382754)	79918	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
151474	chr21	46233571	46234200	+	0	NA	intron (NR_110565, intron 2 of 3)	HAL1|LINE|L1	4654	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
88845	chr16	87550401	87551000	+	0	NA	Intergenic	Intergenic	-51135	NR_073379	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
60610	chr13	42071371	42072380	+	0	NA	intron (NM_001204504, intron 2 of 29)	intron (NM_001204504, intron 2 of 29)	23227	NM_178009	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
26554	chr10	21612751	21613150	+	0	NA	intron (NR_136736, intron 7 of 25)	AluSz6|SINE|Alu	78718	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
82081	chr16	14284921	14287550	+	0	NA	Intergenic	Intergenic	-16053	NR_132983	100129781		NR_132983	ENSG00000262454	MIR193BHG	HypERlnc|lincNORS	MIR193b-365a host gene	ncRNA
34998	chr11	528271	528830	+	0	NA	Intergenic	Intergenic	7017	NM_176795	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
15322	chr1	149884671	149886100	+	0	NA	3' UTR (NM_003528, exon 1 of 1)	3' UTR (NM_003528, exon 1 of 1)	1297	NM_003528	8349		NM_003528	ENSG00000184678	H2BC21	GL105|H2B|H2B-GL105|H2B.1|H2BE|H2BFQ|H2BGL105|H2BQ|HIST2H2BE	H2B clustered histone 21	protein-coding
129614	chr2	70108071	70109600	+	0	NA	Intergenic	Intergenic	16481	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
47815	chr12	6587151	6587250	+	0	NA	intron (NM_001273, intron 25 of 39)	L4_C_Mam|LINE|RTE-X	-5591	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
126767	chr2	30248751	30249130	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	17406	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
65080	chr14	39429351	39429450	+	0	NA	intron (NM_203301, intron 1 of 3)	intron (NM_203301, intron 1 of 3)	3100	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
94524	chr17	29563821	29564650	+	0	NA	intron (NM_198147, intron 1 of 1)	intron (NM_198147, intron 1 of 1)	2802	NM_198147	116236		NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding
151102	chr21	44854021	44855450	+	0	NA	intron (NM_001286822, intron 2 of 2)	intron (NM_001286822, intron 2 of 2)	18955	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
131456	chr2	96338371	96339330	+	0	NA	intron (NM_001281712, intron 1 of 16)	AluYh3|SINE|Alu	3084	NM_001281711	23397		NM_015341	ENSG00000121152	NCAPH	BRRN1|CAP-H|CAPH|MCPH23|NCAPH1	non-SMC condensin I complex subunit H	protein-coding
127483	chr2	42241251	42241750	+	0	NA	intron (NM_019063, intron 1 of 22)	L2|LINE|L2	-71269	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
134175	chr2	134262721	134263380	+	0	NA	intron (NM_001371457, intron 2 of 16)	intron (NM_001371457, intron 2 of 16)	8978	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
81904	chr16	11728271	11729000	+	0	NA	intron (NR_136674, intron 3 of 8)	intron (NR_136674, intron 3 of 8)	14222	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
176807	chr4	102532351	102532650	+	0	NA	intron (NM_001382628, intron 2 of 22)	AluSg7|SINE|Alu	-30014	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
149990	chr21	36939471	36939850	+	0	NA	intron (NR_148020, intron 2 of 10)	intron (NR_148020, intron 2 of 10)	22698	NM_001352518	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
73677	chr15	44739401	44740000	+	0	NA	intron (NM_080745, intron 1 of 5).2	L1PA3|LINE|L1	3172	NM_001301145	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
59710	chr13	29648651	29649030	+	0	NA	intron (NR_135320, intron 1 of 1)	L1M4|LINE|L1	1147	NR_135320	102723345		NR_135320		LOC102723345	-	uncharacterized LOC102723345	ncRNA
109578	chr19	903251	903580	+	0	NA	intron (NM_138774, intron 1 of 7)	intron (NM_138774, intron 1 of 7)	9804	NM_138774	91300		NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
57853	chr12	123273501	123273700	+	0	NA	Intergenic	FRAM|SINE|Alu	-1360	NR_073007	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
200140	chr6	130265401	130265800	+	0	NA	intron (NM_001258275, intron 2 of 13)	Harlequin-int|LTR|ERV1	-42649	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
79180	chr16	308801	309080	+	0	NA	intron (NR_134879, intron 3 of 8)	intron (NR_134879, intron 3 of 8)	25776	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
159991	chr3	18347821	18348080	+	0	NA	3' UTR (NM_001322872, exon 12 of 12)	3' UTR (NM_001322872, exon 12 of 12)	77389	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
119911	chr19	41638621	41639080	+	0	NA	Intergenic	Intergenic	-11776	NM_001362493	1089		NM_001817	ENSG00000105352	CEACAM4	CGM7|CGM7_HUMAN|NCA	CEA cell adhesion molecule 4	protein-coding
100646	chr17	63692221	63692730	+	0	NA	intron (NM_001363768, intron 16 of 16)	intron (NM_001363768, intron 16 of 16)	7650	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
63686	chr14	21085501	21086280	+	0	NA	intron (NM_001278530, intron 19 of 22)	intron (NM_001278530, intron 19 of 22)	12765	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
14740	chr1	145992701	145993330	+	0	NA	3' UTR (NM_006472, exon 8 of 8)	3' UTR (NM_006472, exon 8 of 8)	2729	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
101543	chr17	67992451	67994130	+	0	NA	intron (NM_181655, intron 1 of 2)	CpG	316	NM_181656	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
238544	chrX	153765271	153765780	+	0	NA	5' UTR (NM_005393, exon 2 of 36)	5' UTR (NM_005393, exon 2 of 36)	1276	NM_005393	5365		NM_005393	ENSG00000198753	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
223344	chr8	143839521	143839880	+	0	NA	intron (NM_178564, intron 4 of 17)	CpG-27751	1273	NM_178564	340371		NM_178564	ENSG00000185189	NRBP2	TRG16|pp9320	nuclear receptor binding protein 2	protein-coding
3694	chr1	16532751	16533050	+	0	NA	TTS (NR_135764)	TTS (NR_135764)	2752	NR_135764	100132147		NR_135764	ENSG00000233421	LINC01783	-	long intergenic non-protein coding RNA 1783	ncRNA
95662	chr17	38256701	38258180	+	0	NA	promoter-TSS (NR_036750).2	promoter-TSS (NR_036750).2	-191	NR_036750	440434		NR_036750	ENSG00000291088	NPEPPSP1	NPEPPSL1	NPEPPS pseudogene 1	pseudo
28197	chr10	44913271	44913830	+	0	NA	intron (NM_001345926, intron 1 of 3)	intron (NM_001345926, intron 1 of 3)	2213	NM_001123376	643236		NM_001123376	ENSG00000187783	TMEM72	C10orf127|KSP37	transmembrane protein 72	protein-coding
39873	chr11	62479121	62479580	+	0	NA	intron (NM_024060, intron 5 of 5)	AluSp|SINE|Alu	60317	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
123023	chr19	51124751	51125530	+	0	NA	exon (NM_001198558, exon 1 of 7)	exon (NM_001198558, exon 1 of 7)	234	NM_014441	27180		NM_014441	ENSG00000129450	SIGLEC9	CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9	sialic acid binding Ig like lectin 9	protein-coding
50755	chr12	49018101	49019320	+	0	NA	promoter-TSS (NM_001206710)	promoter-TSS (NM_001206710)	66	NM_001206710	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
180476	chr5	12399951	12400150	+	0	NA	Intergenic	MER74C|LTR|ERVL	-174807	NR_033383	404663		NR_033383		LINC01194	CT49|TAG	long intergenic non-protein coding RNA 1194	ncRNA
23060	chr1	226630421	226630680	+	0	NA	Intergenic	AluJb|SINE|Alu	44518	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
208845	chr7	73700601	73700900	+	0	NA	exon (NM_004603, exon 9 of 10)	exon (NM_004603, exon 9 of 10)	-10567	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
104358	chr17	80996421	80996680	+	0	NA	intron (NM_024591, intron 4 of 7)	intron (NM_024591, intron 4 of 7)	4709	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
100990	chr17	64628701	64629130	+	0	NA	intron (NM_022739, intron 1 of 18)	intron (NM_022739, intron 1 of 18)	33392	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
126510	chr2	28417721	28418300	+	0	NA	TTS (NM_005253)	TTS (NM_005253)	-23338	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
129713	chr2	70864571	70864730	+	0	NA	Intergenic	Intergenic	-23221	NR_126384	104355141		NR_126384	ENSG00000237751	LINC01143	-	long intergenic non-protein coding RNA 1143	ncRNA
208370	chr7	66635001	66635200	+	0	NA	intron (NM_153033, intron 2 of 3)	AluJb|SINE|Alu	6219	NM_153033	154881		NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
114747	chr19	13262351	13262680	+	0	NA	intron (NM_023035, intron 25 of 46)	MER91B|DNA|hAT-Tip100	112104	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
58084	chr12	124583901	124584180	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-16428	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
199016	chr6	111105571	111105730	+	0	NA	intron (NM_018593, intron 1 of 5)	intron (NM_018593, intron 1 of 5)	-8184	NR_145796	109623478		NR_145796		SNORD166	-	small nucleolar RNA, C/D box 166	snoRNA
117821	chr19	30006221	30006630	+	0	NA	intron (NR_045557, intron 5 of 9)	intron (NR_045557, intron 5 of 9)	64186	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
235931	chrX	53194271	53195050	+	0	NA	TTS (NR_106955)	TTS (NR_106955)	828	NR_106955	102465539		NR_106955	ENSG00000276575	MIR6895	hsa-mir-6895	microRNA 6895	ncRNA
140578	chr2	233353701	233355730	+	0	NA	intron (NM_152879, intron 1 of 29)	CpG	221	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
23095	chr1	226666601	226666800	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	8368	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
149646	chr21	33547051	33547150	+	0	NA	intron (NM_001291412, intron 2 of 10)	AluSq2|SINE|Alu	-3562	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
40713	chr11	64796051	64796550	+	0	NA	exon (NM_001307990, exon 24 of 32)	exon (NM_001307990, exon 24 of 32)	6914	NM_004579	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
73368	chr15	42492571	42492730	+	0	NA	Intergenic	AluSc|SINE|Alu	-1509	NM_001381994	64397		NM_022473	ENSG00000103994	ZNF106	SH3BP3|ZFP106|ZNF474	zinc finger protein 106	protein-coding
230858	chr9	129131471	129132230	+	0	NA	intron (NM_001271832, intron 4 of 8)	intron (NM_001271832, intron 4 of 8)	20162	NM_001193397	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
145432	chr20	43466821	43467880	+	0	NA	Intergenic	AluJr|SINE|Alu	9454	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
193726	chr6	31203271	31205000	+	0	NA	TTS (NR_026791)	TTS (NR_026791)	6375	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
25666	chr10	8367001	8367200	+	0	NA	Intergenic	AluY|SINE|Alu	-98795	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
72692	chr15	38563471	38564300	+	0	NA	intron (NM_001128602, intron 1 of 15)	intron (NM_001128602, intron 1 of 15)	929	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
137873	chr2	200835371	200835730	+	0	NA	Intergenic	AluJo|SINE|Alu	23164	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
77420	chr15	83559451	83559550	+	0	NA	intron (NM_001324182, intron 2 of 9)	intron (NM_001324182, intron 2 of 9)	68886	NM_001324187	6457		NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3 domain containing GRB2 like 3, endophilin A3	protein-coding
140986	chr2	238003401	238004180	+	0	NA	intron (NR_037904, intron 4 of 18)	L1ME1|LINE|L1	34997	NM_001278305	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
48676	chr12	10557851	10557950	+	0	NA	non-coding (NR_146455, exon 2 of 2)	non-coding (NR_146455, exon 2 of 2)	4521	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
91872	chr17	7248251	7248830	+	0	NA	intron (NM_015343, intron 2 of 8)	AluSx4|SINE|Alu	3194	NM_001143775	23399		NM_015343	ENSG00000175826	CTDNEP1	DULLARD|HSA011916|NET56	CTD nuclear envelope phosphatase 1	protein-coding
102675	chr17	76102201	76102400	+	0	NA	intron (NM_001145297, intron 2 of 19)	AluJo|SINE|Alu	1271	NM_001282313	23265		NM_015219	ENSG00000182473	EXOC7	2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|NEDSEBA|YJL085W	exocyst complex component 7	protein-coding
12155	chr1	100265471	100267030	+	0	NA	promoter-TSS (NM_003729)	promoter-TSS (NM_003729)	34	NM_003729	8634		NM_003729	ENSG00000137996	RTCA	RPC|RTC1|RTCD1	RNA 3'-terminal phosphate cyclase	protein-coding
37210	chr11	14355271	14355430	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	3135	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
50275	chr12	46356771	46358500	+	0	NA	TTS (NM_018976)	TTS (NM_018976)	15138	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
86261	chr16	58492271	58492830	+	0	NA	intron (NM_022910, intron 2 of 15)	(GT)n|Simple_repeat|Simple_repeat	-7593	NR_040072	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
32013	chr10	100996701	100998600	+	0	NA	promoter-TSS (NM_001318099)	promoter-TSS (NM_001318099)	579	NM_032429	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
106128	chr18	9260801	9261200	+	0	NA	intron (NM_001204056, intron 8 of 11)	L2c|LINE|L2	-73773	NM_020648	57045		NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation BMP signaling modulator 1	protein-coding
117243	chr19	19433801	19434200	+	0	NA	intron (NM_001384517, intron 2 of 12)	AluJb|SINE|Alu	-1063	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
117327	chr19	19517951	19518850	+	0	NA	intron (NM_015965, intron 1 of 4)	AluSx|SINE|Alu	2175	NM_015965	51079		NM_015965	ENSG00000186010	NDUFA13	B16.6|CDA016|CGI-39|GRIM-19|GRIM19|MC1DN28	NADH:ubiquinone oxidoreductase subunit A13	protein-coding
62427	chr13	99307261	99308350	+	0	NA	promoter-TSS (NM_004951)	promoter-TSS (NM_004951)	-406	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
226086	chr9	62799401	62800600	+	0	NA	Intergenic	Intergenic	-1465	NR_121647	103352539		NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
160097	chr3	18976351	18976450	+	0	NA	Intergenic	L1PA3|LINE|L1	-172110	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
18314	chr1	161172551	161172650	+	0	NA	intron (NM_001199874, intron 6 of 7)	intron (NM_001199874, intron 6 of 7)	4907	NM_003779	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
213430	chr7	138458651	138458950	+	0	NA	Intergenic	Intergenic	-1459	NM_015905	8805		NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
176301	chr4	87376951	87377330	+	0	NA	intron (NM_016245, intron 2 of 6)	AluSx1|SINE|Alu	14048	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
86592	chr16	67251151	67251500	+	0	NA	intron (NM_001323972, intron 1 of 14)	intron (NM_001323972, intron 1 of 14)	2346	NM_004594	6553		NM_004594	ENSG00000135740	SLC9A5	NHE5	solute carrier family 9 member A5	protein-coding
28399	chr10	47646771	47647000	+	0	NA	Intergenic	L3|LINE|CR1	-42815	NR_027634	439965		NR_027634		SHLD2P3	FAM35B2|FAM35DP	shieldin complex subunit 2 pseudogene 3	pseudo
69722	chr14	98211321	98211600	+	0	NA	Intergenic	MER53|DNA|hAT	-233336	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
109986	chr19	1411621	1412350	+	0	NA	intron (NM_170711, intron 1 of 12)	intron (NM_170711, intron 1 of 12)	4399	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
152987	chr22	23146771	23147130	+	0	NA	intron (NM_004914, intron 2 of 10)	MIR|SINE|MIR	1473	NR_146295	9609		NM_004914	ENSG00000100228	RAB36	-	RAB36, member RAS oncogene family	protein-coding
87989	chr16	80692521	80692980	+	0	NA	intron (NM_152342, intron 1 of 6)	intron (NM_152342, intron 1 of 6)	111848	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
191318	chr6	6821801	6822050	+	0	NA	Intergenic	(ATG)n|Simple_repeat|Simple_repeat	-199099	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
221403	chr8	123516651	123517750	+	0	NA	intron (NM_148177, intron 1 of 5)	intron (NM_148177, intron 1 of 5)	14943	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
21876	chr1	207748921	207749410	+	0	NA	Intergenic	Intergenic	-2873	NM_002389	4179		NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding
176034	chr4	82366501	82366980	+	0	NA	intron (NM_001003810, intron 1 of 6)	AluSx|SINE|Alu	7251	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
24841	chr10	394421	395080	+	0	NA	intron (NM_014974, intron 10 of 36)	intron (NM_014974, intron 10 of 36)	214756	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
51125	chr12	50103621	50104280	+	0	NA	promoter-TSS (NM_001257199)	promoter-TSS (NM_001257199)	-58	NM_001257199	2819		NM_005276	ENSG00000167588	GPD1	GPD-C|GPDH-C|HTGTI	glycerol-3-phosphate dehydrogenase 1	protein-coding
225685	chr9	36482851	36483380	+	0	NA	Intergenic	AluSq|SINE|Alu	-81917	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
46564	chr11	128493151	128493750	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	28860	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
154512	chr22	35914571	35914730	+	0	NA	intron (NM_001349999, intron 2 of 13)	intron (NM_001349999, intron 2 of 13)	46980	NM_001349996	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
227395	chr9	89524971	89525330	+	0	NA	Intergenic	Intergenic	-27037	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
114592	chr19	12942021	12942880	+	0	NA	intron (NM_004343, intron 7 of 8)	L2a|LINE|L2	1966	NR_106770	102466659		NR_106770	ENSG00000274417	MIR6515	hsa-mir-6515|mir-6515	microRNA 6515	ncRNA
225418	chr9	35062451	35062550	+	0	NA	intron (NM_001354927, intron 7 of 16)	intron (NM_001354927, intron 7 of 16)	9808	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
24148	chr1	235852701	235853300	+	0	NA	promoter-TSS (NR_031718)	promoter-TSS (NR_031718)	60	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
186058	chr5	134074771	134074930	+	0	NA	Intergenic	Intergenic	-39831	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
195303	chr6	36545851	36546490	+	0	NA	intron (NM_007271, intron 1 of 13)	intron (NM_007271, intron 1 of 13)	1309	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
30328	chr10	76303851	76303950	+	0	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	521139	NM_032024	83938		NM_032024	ENSG00000148655	LRMDA	C10orf11|CDA017	leucine rich melanocyte differentiation associated	protein-coding
182445	chr5	62310721	62311200	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	4754	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
7245	chr1	32346721	32347230	+	0	NA	Intergenic	Intergenic	-10742	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
155729	chr22	39139571	39140350	+	0	NA	intron (NM_001346743, intron 3 of 5)	intron (NM_001346743, intron 3 of 5)	12720	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
2937	chr1	11807301	11807500	+	0	NA	intron (NM_001256959, intron 2 of 21)	intron (NM_001256959, intron 2 of 21)	1209	NM_001256959	1185		NM_001286	ENSG00000011021	CLCN6	CLC-6|CONRIBA	chloride voltage-gated channel 6	protein-coding
198388	chr6	105643951	105644750	+	0	NA	Intergenic	LTR50|LTR|ERVL	-241268	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
178772	chr4	153432151	153432500	+	0	NA	Intergenic	Intergenic	-34021	NM_015196	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
87238	chr16	69724601	69724800	+	0	NA	intron (NM_000903, intron 1 of 5)	AluJb|SINE|Alu	1860	NM_000903	1728		NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	NAD(P)H quinone dehydrogenase 1	protein-coding
184712	chr5	109374651	109375030	+	0	NA	intron (NM_014819, intron 4 of 9)	AmnSINE1|SINE|5S-Deu-L2	35134	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
50622	chr12	48696801	48697200	+	0	NA	intron (NM_001240, intron 6 of 8)	AluSz6|SINE|Alu	-14762	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
17687	chr1	157994401	157994800	+	0	NA	intron (NM_001286349, intron 1 of 12)	intron (NM_001286349, intron 1 of 12)	955	NM_018240	55243		NM_018240	ENSG00000183853	KIRREL1	KIRREL|NEPH1|NPHS23	kirre like nephrin family adhesion molecule 1	protein-coding
176978	chr4	104896671	104897230	+	0	NA	Intergenic	Intergenic	-248925	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
149679	chr21	33901721	33902180	+	0	NA	Intergenic	Intergenic	13854	NM_001697	539		NM_001697	ENSG00000241837	ATP5PO	ATP5O|ATPO|HMC08D05|MC5DN7|OSCP	ATP synthase peripheral stalk subunit OSCP	protein-coding
39001	chr11	47716571	47716730	+	0	NA	3' UTR (NM_001318339, exon 17 of 17)	3' UTR (NM_001318339, exon 17 of 17)	-1281	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
71987	chr15	25810351	25810980	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	38160	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
185529	chr5	131340501	131341180	+	0	NA	intron (NM_001375633, intron 2 of 5)	AluSz6|SINE|Alu	76787	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
113414	chr19	9620521	9621650	+	0	NA	promoter-TSS (NR_122038)	promoter-TSS (NR_122038)	147	NM_152289	93134		NM_152289	ENSG00000171469	ZNF561	-	zinc finger protein 561	protein-coding
153494	chr22	26480701	26480900	+	0	NA	intron (NR_146311, intron 2 of 13)	AluJb|SINE|Alu	-1119	NM_152841	89781		NM_022081	ENSG00000100099	HPS4	BLOC3S2|LE	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding
34064	chr10	124911521	124911780	+	0	NA	Intergenic	Intergenic	-30473	NM_017580	54764		NM_017580	ENSG00000019995	ZRANB1	TRABID	zinc finger RANBP2-type containing 1	protein-coding
143764	chr20	32396771	32396930	+	0	NA	intron (NM_015338, intron 3 of 11)	intron (NM_015338, intron 3 of 11)	37785	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
103290	chr17	77843471	77844730	+	0	NA	Intergenic	L1MB5|LINE|L1	39987	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
112123	chr19	5599851	5600150	+	0	NA	intron (NM_014649, intron 12 of 20)	intron (NM_014649, intron 12 of 20)	22776	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
29793	chr10	72284951	72286050	+	0	NA	Intergenic	L1MB2|LINE|L1	11576	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
170694	chr3	187822251	187822900	+	0	NA	Intergenic	Intergenic	-77107	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
23325	chr1	228096501	228096700	+	0	NA	promoter-TSS (NR_037415)	promoter-TSS (NR_037415)	-663	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
147477	chr20	59140101	59140400	+	0	NA	intron (NM_001384354, intron 1 of 7)	intron (NM_001384354, intron 1 of 7)	16862	NM_001384354	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
10236	chr1	63328701	63328900	+	0	NA	Intergenic	Intergenic	-1816	NR_106716	102464823		NR_106716	ENSG00000275836	MIR6068	hsa-mir-6068	microRNA 6068	ncRNA
195009	chr6	35418101	35418500	+	0	NA	intron (NM_001171820, intron 3 of 5)	MIRb|SINE|MIR	-34038	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
8287	chr1	40034521	40035380	+	0	NA	Intergenic	Intergenic	-5290	NM_001350479	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
216862	chr8	22619571	22620480	+	0	NA	TTS (NM_018688)	TTS (NM_018688)	14983	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
38947	chr11	47514771	47515680	+	0	NA	intron (NM_001376409, intron 1 of 15)	intron (NM_001376409, intron 1 of 15)	8606	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
2619	chr1	10185671	10185830	+	0	NA	Intergenic	FRAM|SINE|Alu	-24820	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
167195	chr3	128293801	128294280	+	0	NA	intron (NM_021937, intron 4 of 6)	intron (NM_021937, intron 4 of 6)	-140126	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
79833	chr16	1437971	1438680	+	0	NA	intron (NM_001143980, intron 9 of 16)	intron (NM_001143980, intron 9 of 16)	6164	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
132171	chr2	101774071	101774230	+	0	NA	intron (NM_001384572, intron 1 of 29)	L1MA2|LINE|L1	75885	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
61976	chr13	79480721	79482030	+	0	NA	promoter-TSS (NR_046685)	promoter-TSS (NR_046685)	-144	NR_046685	100874208		NR_046685	ENSG00000232132	NDFIP2-AS1	-	NDFIP2 antisense RNA 1	ncRNA
23473	chr1	228619751	228620350	+	0	NA	promoter-TSS (NR_023363).5	promoter-TSS (NR_023363).5	-700	NR_023370	100169759		NR_023370	ENSG00000200343	RNA5S8	RN5S8	RNA, 5S ribosomal 8	rRNA
180449	chr5	10607851	10607950	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	43830	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
64941	chr14	35811571	35812250	+	0	NA	Intergenic	AluJr|SINE|Alu	-2615	NM_014990	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
143663	chr20	31953301	31953500	+	0	NA	Intergenic	Intergenic	-1354	NM_030815	81572		NM_030815	ENSG00000088356	PDRG1	C20orf126|PDRG	p53 and DNA damage regulated 1	protein-coding
69214	chr14	92694271	92694830	+	0	NA	Intergenic	Intergenic	54077	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
43050	chr11	74269521	74269780	+	0	NA	intron (NR_110031, intron 10 of 11)	intron (NR_110031, intron 10 of 11)	-41712	NR_120556	101928580		NR_120556	ENSG00000246211	P4HA3-AS1	-	P4HA3 antisense RNA 1	ncRNA
166637	chr3	119681251	119681600	+	0	NA	Intergenic	Intergenic	-4019	NM_001382002	10063		NM_005694	ENSG00000138495	COX17	-	cytochrome c oxidase copper chaperone COX17	protein-coding
15092	chr1	148525021	148525400	+	0	NA	Intergenic	AluY|SINE|Alu	-41908	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
150828	chr21	44017271	44018150	+	0	NA	intron (NM_003274, intron 1 of 22)	MER119|DNA|hAT-Charlie	5401	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
100679	chr17	63772841	63775080	+	0	NA	promoter-TSS (NM_007372)	promoter-TSS (NM_007372)	-210	NM_203499	11325		NM_007372	ENSG00000198231	DDX42	DDX42P|RHELP|RNAHP|SF3B8|SF3b125	DEAD-box helicase 42	protein-coding
230677	chr9	128719451	128719550	+	0	NA	intron (NM_001317926, intron 18 of 21)	intron (NM_001317926, intron 18 of 21)	4627	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
30964	chr10	87855621	87855900	+	0	NA	Intergenic	L1PA6|LINE|L1	7773	NM_001126049	100144748		NM_001126049	ENSG00000227268	KLLN	CWS4|KILLIN	killin, p53 regulated DNA replication inhibitor	protein-coding
164893	chr3	71101801	71102000	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	28686	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
33637	chr10	119663621	119664900	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	12880	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
66343	chr14	61444051	61445430	+	0	NA	intron (NM_006255, intron 3 of 13)	MIR|SINE|MIR	123297	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
99469	chr17	50160921	50162120	+	0	NA	Intergenic	CpG	-4485	NM_000023	6442		NM_000023	ENSG00000108823	SGCA	50DAG|ADL|DAG2|DMDA2|LGMD2D|LGMDR3|SCARMD1|adhalin	sarcoglycan alpha	protein-coding
83545	chr16	27995221	27995480	+	0	NA	intron (NM_001109763, intron 1 of 6)	L1M7|LINE|L1	68364	NM_001109763	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
7776	chr1	36221551	36221850	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2743	NM_001321471	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
175115	chr4	54687971	54688200	+	0	NA	intron (NM_001385292, intron 1 of 20)	intron (NM_001385292, intron 1 of 20)	30128	NM_001093772	3815		NM_000222	ENSG00000157404	KIT	C-Kit|CD117|MASTC|PBT|SCFR	KIT proto-oncogene, receptor tyrosine kinase	protein-coding
111158	chr19	3308051	3308600	+	0	NA	Intergenic	L2|LINE|L2	-51305	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
207071	chr7	39952401	39953150	+	0	NA	intron (NM_003718, intron 1 of 13)	intron (NM_003718, intron 1 of 13)	2415	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
117570	chr19	21352871	21353030	+	0	NA	Intergenic	L1PB1|LINE|L1	-5980	NM_001355240	148203		NM_001355237	ENSG00000172687	ZNF738	-	zinc finger protein 738	protein-coding
170793	chr3	189121001	189121800	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-50571	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
64778	chr14	34713801	34715380	+	0	NA	promoter-TSS (NM_021914)	promoter-TSS (NM_021914)	3	NM_138638	1073		NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding
42798	chr11	72790921	72791650	+	0	NA	intron (NM_006645, intron 1 of 6)	intron (NM_006645, intron 1 of 6)	2420	NM_006645	10809		NM_006645	ENSG00000214530	STARD10	CGI-52|NY-CO-28|PCTP2|SDCCAG28	StAR related lipid transfer domain containing 10	protein-coding
60041	chr13	32731501	32731800	+	0	NA	intron (NM_015032, intron 19 of 34)	intron (NM_015032, intron 19 of 34)	145198	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
224842	chr9	27564721	27564980	+	0	NA	intron (NM_018325, intron 3 of 10)	intron (NM_018325, intron 3 of 10)	8631	NM_018325	203228		NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1	C9orf72-SMCR8 complex subunit	protein-coding
45656	chr11	119014101	119014450	+	0	NA	intron (NR_104050, intron 8 of 10).2	L1ME1|LINE|L1	4068	NM_001028	6230		NM_001028	ENSG00000118181	RPS25	S25|eS25	ribosomal protein S25	protein-coding
141005	chr2	238142771	238143130	+	0	NA	intron (NM_198582, intron 3 of 7)	intron (NM_198582, intron 3 of 7)	4282	NM_198582	377007		NM_198582	ENSG00000168427	KLHL30	-	kelch like family member 30	protein-coding
184516	chr5	100907401	100907600	+	0	NA	Intergenic	L1MC1|LINE|L1	-4218	NM_175052	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
192844	chr6	27154621	27155380	+	0	NA	Intergenic	L2|LINE|L2	7374	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
206234	chr7	29090301	29090500	+	0	NA	intron (NM_001371256, intron 10 of 16)	intron (NM_001371256, intron 10 of 16)	-34633	NR_120523	1124		NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
29438	chr10	70380501	70380900	+	0	NA	intron (NM_018239, intron 1 of 3)	intron (NM_018239, intron 1 of 3)	866	NM_207119	55222		NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
73878	chr15	50356501	50357400	+	0	NA	non-coding (NR_024490, exon 1 of 1)	non-coding (NR_024490, exon 1 of 1)	-1542	NM_016655	2553		NM_002041	ENSG00000104064	GABPB1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4TF1B|GABPB|GABPB-1|GABPB2|NRF2B1|NRF2B2	GA binding protein transcription factor subunit beta 1	protein-coding
52917	chr12	57235971	57236650	+	0	NA	intron (NM_020142, intron 3 of 4)	intron (NM_020142, intron 3 of 4)	4382	NM_020142	56901		NM_020142	ENSG00000185633	NDUFA4L2	COXFA4L2|MISTRH|NUOMS	NDUFA4 mitochondrial complex associated like 2	protein-coding
157835	chr22	47809871	47810030	+	0	NA	intron (NR_122046, intron 8 of 8)	(GT)n|Simple_repeat|Simple_repeat	178276	NR_122046	284930		NR_122046	ENSG00000224271	EPIC1	Lnc-EPIC1	epigenetically induced MYC interacting lncRNA 1	ncRNA
33720	chr10	121929421	121929980	+	0	NA	promoter-TSS (NM_001288736)	promoter-TSS (NM_001288736)	-899	NM_001288736	11101		NM_007041	ENSG00000107669	ATE1	-	arginyltransferase 1	protein-coding
28691	chr10	60782601	60783000	+	0	NA	intron (NM_033379, intron 2 of 6)	intron (NM_033379, intron 2 of 6)	4322	NM_001786	983		NM_001786	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin dependent kinase 1	protein-coding
144685	chr20	36438951	36440250	+	0	NA	intron (NM_001365621, intron 4 of 12)	intron (NM_001365621, intron 4 of 12)	-21868	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
5249	chr1	25019901	25020300	+	0	NA	Intergenic	Intergenic	-3403	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
187569	chr5	142794671	142794830	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	23523	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
233543	chrX	249601	252080	+	0	NA	Intergenic	CpG	-25516	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228343	chr9	98989421	98989680	+	0	NA	intron (NM_001855, intron 5 of 41)	MIRb|SINE|MIR	45643	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
184831	chr5	111316221	111316480	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	91966	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
228227	chr9	97908021	97908280	+	0	NA	intron (NM_001371657, intron 4 of 5)	AluY|SINE|Alu	14031	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
6761	chr1	30740101	30740300	+	0	NA	promoter-TSS (NR_039616)	promoter-TSS (NR_039616)	-968	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
198626	chr6	107782451	107782750	+	0	NA	intron (NM_198081, intron 1 of 7)	LTR33A_|LTR|ERVL	41713	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
229937	chr9	126645201	126645400	+	0	NA	intron (NM_001174147, intron 2 of 7)	L2b|LINE|L2	31372	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
185390	chr5	128089121	128089380	+	0	NA	intron (NR_046207, intron 1 of 26)	FAM|SINE|Alu	5484	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
144418	chr20	35322901	35323100	+	0	NA	intron (NM_018244, intron 7 of 9)	AluY|SINE|Alu	-30575	NM_178468	128876		NM_178468	ENSG00000125998	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83 member C	protein-coding
114768	chr19	13732851	13732950	+	0	NA	intron (NM_001320561, intron 2 of 10)	AluSz|SINE|Alu	1148	NM_001320564	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
203456	chr7	414101	414350	+	0	NA	Intergenic	(CCT)n|Simple_repeat|Simple_repeat	-11237	NR_165239	116435278		NR_165237	ENSG00000286710	LOC116435278	-	uncharacterized LOC116435278	ncRNA
39363	chr11	59564451	59565130	+	0	NA	Intergenic	AluSp|SINE|Alu	30368	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
73171	chr15	41486071	41486430	+	0	NA	Intergenic	CpG	-7624	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
150	chr1	528871	529550	+	0	NA	Intergenic	Intergenic	-33765	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
168392	chr3	142126201	142126630	+	0	NA	intron (NM_001178139, intron 1 of 12)	intron (NM_001178139, intron 1 of 12)	23129	NM_001375773	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
187680	chr5	143276051	143276150	+	0	NA	Intergenic	Intergenic	83600	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
105700	chr18	2681871	2682600	+	0	NA	intron (NM_015295, intron 5 of 47)	intron (NM_015295, intron 5 of 47)	26509	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
136932	chr2	190069051	190069230	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6411	NM_005259	2660		NM_005259	ENSG00000138379	MSTN	GDF8|MSLHP	myostatin	protein-coding
62846	chr13	109869401	109869830	+	0	NA	Intergenic	Intergenic	-83032	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
41891	chr11	67255001	67255550	+	0	NA	non-coding (NR_027473, exon 21 of 21)	non-coding (NR_027473, exon 21 of 21)	-11198	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
206380	chr7	30697771	30697930	+	0	NA	intron (NM_001202481, intron 1 of 13)	intron (NM_001202481, intron 1 of 13)	2253	NM_001202475	1395		NM_001883	ENSG00000106113	CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
45899	chr11	120334801	120335230	+	0	NA	Intergenic	Intergenic	-1398	NM_001198665	23365		NM_015313	ENSG00000196914	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor 12	protein-coding
41405	chr11	66020821	66021600	+	0	NA	intron (NM_053054, intron 4 of 11)	intron (NM_053054, intron 4 of 11)	5269	NM_053054	117144		NM_053054	ENSG00000175294	CATSPER1	CATSPER|SPGF7	cation channel sperm associated 1	protein-coding
158215	chr22	50264771	50265250	+	0	NA	non-coding (NR_110887, exon 12 of 13)	non-coding (NR_110887, exon 12 of 13)	-3200	NM_001303252	6300		NM_002969	ENSG00000188130	MAPK12	ERK-6|ERK3|ERK6|MAPK 12|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
118295	chr19	35351651	35351950	+	0	NA	exon (NM_005303, exon 1 of 1)	exon (NM_005303, exon 1 of 1)	258	NM_005303	2864		NM_005303	ENSG00000126266	FFAR1	FFA1R|GPCR40|GPR40	free fatty acid receptor 1	protein-coding
8194	chr1	39573501	39573900	+	0	NA	TTS (NR_125979)	TTS (NR_125979)	3090	NM_001135654	8761		NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
87055	chr16	68327371	68327730	+	0	NA	intron (NR_165371, intron 5 of 17)	intron (NR_165371, intron 5 of 17)	16436	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
42433	chr11	69291521	69291950	+	0	NA	Intergenic	Intergenic	-2420	NM_001293294	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
232695	chr9	136536571	136536880	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	9323	NM_017617	4851		NM_017617	ENSG00000148400	NOTCH1	AOS5|AOVD1|TAN1|hN1	notch receptor 1	protein-coding
127158	chr2	37934571	37934730	+	0	NA	intron (NM_001322211, intron 2 of 10)	intron (NM_001322211, intron 2 of 10)	5891	NM_001170792	151393		NM_144713	ENSG00000115841	RMDN2	BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
171692	chr3	197784321	197785750	+	0	NA	TTS (NM_001011537)	TTS (NM_001011537)	-6191	NM_001363887	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
121570	chr19	47268271	47268430	+	0	NA	intron (NM_015603, intron 8 of 11)	intron (NM_015603, intron 8 of 11)	-6073	NR_037675	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
151285	chr21	45490601	45490800	+	0	NA	intron (NM_001379500, intron 20 of 41)	intron (NM_001379500, intron 20 of 41)	12434	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
154133	chr22	31213201	31214080	+	0	NA	intron (NM_005569, intron 1 of 15)	FLAM_C|SINE|Alu	1342	NM_005569	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
236039	chrX	55488421	55489900	+	0	NA	promoter-TSS (NM_201286)	promoter-TSS (NM_201286)	38	NM_201286	158880		NM_201286	ENSG00000247746	USP51	-	ubiquitin specific peptidase 51	protein-coding
106037	chr18	8703371	8703530	+	0	NA	intron (NR_120598, intron 1 of 1)	intron (NR_120598, intron 1 of 1)	-2106	NM_001378205	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
179151	chr4	169659571	169660580	+	0	NA	promoter-TSS (NM_001243374)	promoter-TSS (NM_001243374)	13	NM_001243374	1182		NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3|NEDHYBA|NEDSBA	chloride voltage-gated channel 3	protein-coding
96274	chr17	39867101	39868780	+	0	NA	promoter-TSS (NM_198844)	promoter-TSS (NM_198844)	-262	NM_199321	124626		NM_198844	ENSG00000186075	ZPBP2	ZPBPL	zona pellucida binding protein 2	protein-coding
41198	chr11	65646051	65646830	+	0	NA	intron (NM_153253, intron 7 of 15)	CpG	-2752	NR_039709	100616284		NR_039709	ENSG00000265874	MIR4489	mir-4489	microRNA 4489	ncRNA
126748	chr2	30229521	30229930	+	0	NA	Intergenic	Intergenic	-1809	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
74317	chr15	58369251	58369830	+	0	NA	Intergenic	Intergenic	-62451	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
220173	chr8	95135801	95136300	+	0	NA	intron (NM_024613, intron 1 of 1)	intron (NM_024613, intron 1 of 1)	2265	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
47540	chr12	4280751	4280850	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-4616	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
99593	chr17	50532471	50533200	+	0	NA	promoter-TSS (NM_017957)	promoter-TSS (NM_017957)	100	NM_017957	55040		NM_017957	ENSG00000049283	EPN3	-	epsin 3	protein-coding
128024	chr2	47174351	47176000	+	0	NA	promoter-TSS (NM_001305626)	promoter-TSS (NM_001305626)	-968	NM_001305626	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
160079	chr3	18757621	18758370	+	0	NA	Intergenic	Intergenic	-312403	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
36904	chr11	10788301	10789050	+	0	NA	Intergenic	AluJb|SINE|Alu	12933	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
128942	chr2	64566371	64566530	+	0	NA	intron (NM_001375973, intron 2 of 6)	intron (NM_001375973, intron 2 of 6)	-40862	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
102941	chr17	76670301	76670890	+	0	NA	Intergenic	Intergenic	-1333	NR_130916	105274304		NR_130916	ENSG00000261335	LOC105274304	-	uncharacterized LOC105274304	ncRNA
11755	chr1	92313901	92314480	+	0	NA	intron (NM_024813, intron 6 of 12)	Tigger1|DNA|TcMar-Tigger	15131	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
88510	chr16	85309901	85310580	+	0	NA	Intergenic	MIR|SINE|MIR	-3915	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
201638	chr6	149465971	149466530	+	0	NA	intron (NM_207360, intron 2 of 5)	intron (NM_207360, intron 2 of 5)	18764	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
208435	chr7	66843001	66843200	+	0	NA	intron (NR_003934, intron 1 of 10)	AluSx1|SINE|Alu	1726	NR_003934	729156		NR_003934	ENSG00000291206	GTF2IRD1P1	-	GTF2I repeat domain containing 1 pseudogene 1	pseudo
4985	chr1	24228251	24228550	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	28160	NR_027087	284632		NR_027087	ENSG00000230023	LINC02800	-	long intergenic non-protein coding RNA 2800	ncRNA
19421	chr1	174191001	174191630	+	0	NA	intron (NM_001366447, intron 1 of 20)	intron (NM_001366447, intron 1 of 20)	31795	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
100697	chr17	63831251	63831350	+	0	NA	TTS (NM_001098426)	TTS (NM_001098426)	3616	NM_001199163	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
230699	chr9	128738071	128738430	+	0	NA	intron (NM_001375959, intron 12 of 14)	AluYh3|SINE|Alu	13788	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
58043	chr12	124459421	124459930	+	0	NA	intron (NM_001077261, intron 7 of 47)	intron (NM_001077261, intron 7 of 47)	107937	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
76885	chr15	77984421	77985150	+	0	NA	Intergenic	Intergenic	9440	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
22946	chr1	225990721	225991500	+	0	NA	intron (NM_152608, intron 5 of 6)	intron (NM_152608, intron 5 of 6)	8233	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
121327	chr19	46775651	46776480	+	0	NA	intron (NM_005628, intron 7 of 7)	AluJb|SINE|Alu	8749	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
145842	chr20	45856801	45858050	+	0	NA	promoter-TSS (NR_037628)	promoter-TSS (NR_037628)	-33	NM_005469	10005		NM_005469	ENSG00000101473	ACOT8	HNAACTE|NAP1|PTE-1|PTE-2|PTE1|PTE2|hACTE-III|hTE	acyl-CoA thioesterase 8	protein-coding
129278	chr2	68423471	68424650	+	0	NA	Intergenic	L2|LINE|L2	43234	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
865	chr1	1622601	1622900	+	0	NA	intron (NM_001170687, intron 2 of 19)	intron (NM_001170687, intron 2 of 19)	6895	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
160373	chr3	27903351	27903850	+	0	NA	Intergenic	Intergenic	-69464	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
177271	chr4	109442171	109442330	+	0	NA	intron (NM_001318085, intron 1 of 23)	MamRep38|DNA|hAT	-8433	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
115367	chr19	15230601	15230900	+	0	NA	intron (NM_024794, intron 4 of 6)	AluSq2|SINE|Alu	1698	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
162075	chr3	46876521	46876980	+	0	NA	promoter-TSS (NM_000316)	promoter-TSS (NM_000316)	-971	NM_000316	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
236333	chrX	69493271	69493430	+	0	NA	Intergenic	Intergenic	-10976	NM_015686	27112		NM_015686	ENSG00000130054	NALF2	CXorf63|FAM155B|TED|TMEM28|bB57D9.1	NALCN channel auxiliary factor 2	protein-coding
41356	chr11	65966521	65967050	+	0	NA	intron (NM_005146, intron 9 of 19)	MIRb|SINE|MIR	5051	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
80201	chr16	2149901	2150300	+	0	NA	intron (NM_014353, intron 2 of 8)	intron (NM_014353, intron 2 of 8)	1475	NM_014353	25837		NM_014353	ENSG00000167964	RAB26	V46133	RAB26, member RAS oncogene family	protein-coding
121243	chr19	46659801	46660080	+	0	NA	promoter-TSS (NR_040042)	promoter-TSS (NR_040042)	-424	NR_040042	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
137091	chr2	190941621	190942280	+	0	NA	intron (NM_014905, intron 14 of 17)	MER5A|DNA|hAT-Charlie	61129	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
40504	chr11	64268051	64268300	+	0	NA	TTS (NM_000932)	TTS (NM_000932)	-2356	NM_001378076	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
138738	chr2	214679701	214679900	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	129883	NM_001282549	580		NM_000465	ENSG00000138376	BARD1	-	BRCA1 associated RING domain 1	protein-coding
38769	chr11	47171371	47171750	+	0	NA	intron (NM_032389, intron 9 of 15)	intron (NM_032389, intron 9 of 15)	5319	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
217403	chr8	28359521	28359780	+	0	NA	exon (NM_018660, exon 3 of 10)	exon (NM_018660, exon 3 of 10)	21003	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
52725	chr12	56604521	56604780	+	0	NA	exon (NM_013449, exon 15 of 29)	exon (NM_013449, exon 15 of 29)	25676	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
83458	chr16	27347871	27348230	+	0	NA	intron (NM_001257997, intron 5 of 9)	intron (NM_001257997, intron 5 of 9)	34076	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
86796	chr16	67824571	67825130	+	0	NA	intron (NM_001288993, intron 4 of 12)	intron (NM_001288993, intron 4 of 12)	-17470	NM_020457	57215		NM_020457	ENSG00000168286	THAP11	CTG-B43a|CTG-B45d|HRIHFB2206|RONIN	THAP domain containing 11	protein-coding
228049	chr9	96022721	96023250	+	0	NA	intron (NM_001375291, intron 18 of 18)	intron (NM_001375291, intron 18 of 18)	-1174	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
233270	chr9	137296721	137297250	+	0	NA	Intergenic	Intergenic	5286	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
168143	chr3	138946951	138947880	+	0	NA	promoter-TSS (NM_023067)	promoter-TSS (NM_023067)	198	NM_001040061	401089		NM_001040061	ENSG00000206262	FOXL2NB	C3orf72	FOXL2 neighbor	protein-coding
69526	chr14	96389851	96389950	+	0	NA	Intergenic	AluSg|SINE|Alu	-2228	NM_152327	122481		NM_152327	ENSG00000140057	AK7	AK 7|CFAP75|FAP75|SPGF27	adenylate kinase 7	protein-coding
106210	chr18	11751051	11751350	+	0	NA	promoter-TSS (NM_001369387)	promoter-TSS (NM_001369387)	-272	NM_001261443	2774		NM_002071	ENSG00000141404	GNAL	DYT25|HG1O	G protein subunit alpha L	protein-coding
156414	chr22	41196171	41196350	+	0	NA	intron (NR_110514, intron 1 of 2)	AluSx1|SINE|Alu	1241	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
149697	chr21	33955601	33956030	+	0	NA	intron (NR_038883, intron 2 of 2)	L1MEd|LINE|L1	-20567	NR_134561	101928126		NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
116494	chr19	18127271	18127430	+	0	NA	intron (NM_015016, intron 10 of 26)	AluSx|SINE|Alu	-25813	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
157769	chr22	46737401	46738700	+	0	NA	exon (NM_022766, exon 1 of 13)	exon (NM_022766, exon 1 of 13)	202	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
147499	chr20	59169321	59169580	+	0	NA	intron (NM_178457, intron 1 of 5)	L1MD1|LINE|L1	5629	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
92942	chr17	16990471	16990630	+	0	NA	TTS (NR_146886)	TTS (NR_146886)	2221	NR_146886	105371562		NR_146886	ENSG00000230969	LINC02090	-	long intergenic non-protein coding RNA 2090	ncRNA
3346	chr1	15444901	15445100	+	0	NA	intron (NM_007272, intron 6 of 7)	MIR|SINE|MIR	6557	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
154716	chr22	36435451	36436550	+	0	NA	Intergenic	L2b|LINE|L2	45640	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
114796	chr19	13786171	13786330	+	0	NA	Intergenic	AluY|SINE|Alu	-9193	NM_001367834	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
38538	chr11	45904701	45905230	+	0	NA	intron (NM_005456, intron 9 of 11)	intron (NM_005456, intron 9 of 11)	2306	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
228192	chr9	97695171	97695330	+	0	NA	intron (NR_149091, intron 1 of 3)	intron (NR_149091, intron 1 of 3)	2090	NM_000380	7507		NM_000380	ENSG00000136936	XPA	XP1|XPAC	XPA, DNA damage recognition and repair factor	protein-coding
202191	chr6	156330471	156330630	+	0	NA	Intergenic	L1HS|LINE|L1	-48200	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
15104	chr1	148589171	148589830	+	0	NA	intron (NM_015383, intron 5 of 65)	intron (NM_015383, intron 5 of 65)	6217	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
176850	chr4	102598251	102599600	+	0	NA	intron (NM_001382625, intron 16 of 24)	intron (NM_001382625, intron 16 of 24)	-96439	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
211395	chr7	105025771	105025930	+	0	NA	intron (NM_182931, intron 1 of 26)	Tigger13a|DNA|TcMar-Tigger	11645	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
178576	chr4	151131401	151131600	+	0	NA	intron (NM_001378121, intron 18 of 20)	AluY|SINE|Alu	27673	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
111483	chr19	3958771	3959400	+	0	NA	3' UTR (NM_001375658, exon 9 of 9)	3' UTR (NM_001375658, exon 9 of 9)	2427	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
213840	chr7	141736971	141738900	+	0	NA	promoter-TSS (NM_001256512)	promoter-TSS (NM_001256512)	295	NR_015392	285962		NM_173677	ENSG00000228775	WEE2-AS1	-	WEE2 antisense RNA 1	ncRNA
213375	chr7	135939221	135939550	+	0	NA	intron (NM_001128619, intron 3 of 3)	LTR67B|LTR|ERVL	37974	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
115605	chr19	16066501	16067450	+	0	NA	promoter-TSS (NM_001145160)	promoter-TSS (NM_001145160)	-563	NM_001145160	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
64035	chr14	22523801	22524750	+	0	NA	Intergenic	MIR|SINE|MIR	32787	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
196651	chr6	44301021	44301280	+	0	NA	intron (NM_020745, intron 21 of 21)	intron (NM_020745, intron 21 of 21)	-3452	NM_182539	202500		NM_182539	ENSG00000146221	TCTE1	D6S46|DRC5|FAP155	t-complex-associated-testis-expressed 1	protein-coding
209187	chr7	75409051	75409350	+	0	NA	Intergenic	AluJr|SINE|Alu	-1122	NR_104013	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
139189	chr2	219225121	219225380	+	0	NA	intron (NR_104255, intron 6 of 15)	intron (NR_104255, intron 6 of 15)	4386	NM_024085	79065		NM_024085	ENSG00000198925	ATG9A	APG9L1|MGD3208|mATG9	autophagy related 9A	protein-coding
160046	chr3	18441571	18442130	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	2268	NM_001322875	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
180765	chr5	32157851	32159200	+	0	NA	intron (NM_022130, intron 1 of 3)	intron (NM_022130, intron 1 of 3)	15794	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
178988	chr4	163484751	163485180	+	0	NA	Intergenic	Intergenic	-9725	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
89298	chr16	88710221	88710480	+	0	NA	intron (NM_001318507, intron 4 of 14)	intron (NM_001318507, intron 4 of 14)	3847	NM_001012762	348180		NM_001012759	ENSG00000174177	CTU2	C16orf84|MFRG|NCS2|UPF0432	cytosolic thiouridylase subunit 2	protein-coding
17888	chr1	160083671	160084630	+	0	NA	exon (NM_004983, exon 2 of 3)	exon (NM_004983, exon 2 of 3)	2612	NM_004983	3765		NM_004983	ENSG00000162728	KCNJ9	GIRK3|KIR3.3	potassium inwardly rectifying channel subfamily J member 9	protein-coding
152680	chr22	21612171	21612600	+	0	NA	intron (NM_003347, intron 3 of 3)	AluY|SINE|Alu	17637	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
175903	chr4	80142471	80142630	+	0	NA	Intergenic	Intergenic	-42720	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
726	chr1	1439301	1440030	+	0	NA	exon (NM_022834, exon 3 of 3)	exon (NM_022834, exon 3 of 3)	3975	NM_022834	64856		NM_022834	ENSG00000179403	VWA1	HMNMYO|HMNR7|WARP	von Willebrand factor A domain containing 1	protein-coding
10125	chr1	59316521	59317180	+	0	NA	intron (NR_103473, intron 2 of 16)	intron (NR_103473, intron 2 of 16)	6818	NM_001350792	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
83810	chr16	28830671	28831230	+	0	NA	intron (NM_148416, intron 9 of 22)	(A)n|Simple_repeat|Simple_repeat	7902	NM_007245	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
84660	chr16	30744221	30744480	+	0	NA	3' UTR (NM_001256829, exon 3 of 3)	3' UTR (NM_001256829, exon 3 of 3)	3708	NM_001256829	100862671		NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
45525	chr11	118741621	118742080	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	49098	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
231290	chr9	130035451	130035550	+	0	NA	intron (NM_001363755, intron 1 of 15)	ERV3-16A3_LTR|LTR|ERVL	7689	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
142681	chr20	6077371	6077630	+	0	NA	intron (NM_017671, intron 14 of 14)	intron (NM_017671, intron 14 of 14)	-23440	NM_152611	164312		NM_152611	ENSG00000125872	LRRN4	C20orf75|NLRR-4|NLRR4|dJ1056H1.1	leucine rich repeat neuronal 4	protein-coding
115955	chr19	16830551	16830650	+	0	NA	intron (NM_001297595, intron 2 of 18)	MIR3|SINE|MIR	1202	NM_015260	23309		NM_015260	ENSG00000127511	SIN3B	-	SIN3 transcription regulator family member B	protein-coding
148763	chr21	8155671	8156030	+	0	NA	Intergenic	Intergenic	-41770	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
158493	chr3	961071	961230	+	0	NA	Intergenic	Intergenic	-131874	NM_001349351	27255		NM_014461	ENSG00000134115	CNTN6	NB3	contactin 6	protein-coding
196901	chr6	52331871	52332030	+	0	NA	Intergenic	Intergenic	-30201	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
118413	chr19	35759571	35760000	+	0	NA	intron (NM_001039887, intron 2 of 10)	intron (NM_001039887, intron 2 of 10)	1609	NM_001039887	148137		NM_144692	ENSG00000167595	PROSER3	C19orf55	proline and serine rich 3	protein-coding
48132	chr12	7902521	7903000	+	0	NA	Intergenic	AluSp|SINE|Alu	-11564	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
152569	chr22	21102721	21103180	+	0	NA	promoter-TSS (NR_037566)	promoter-TSS (NR_037566)	-66	NR_037566	400892		NM_207474	ENSG00000291044	BCRP2	BCR-2|BCR2|BCRL2	BCR pseudogene 2	pseudo
17181	chr1	156231351	156232250	+	0	NA	intron (NM_001199654, intron 2 of 4)	intron (NM_001199654, intron 2 of 4)	-10384	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
175653	chr4	76690271	76690430	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	114799	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
84695	chr16	30785151	30785680	+	0	NA	intron (NM_001080417, intron 1 of 2)	intron (NM_001080417, intron 1 of 2)	1790	NM_001080417	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
182835	chr5	69236951	69237430	+	0	NA	intron (NM_001324070, intron 2 of 8).2	AluJr|SINE|Alu	2304	NR_136690	1022		NM_001799	ENSG00000134058	CDK7	CAK|CAK1|CDKN7|HCAK|MO15|STK1|p39MO15	cyclin dependent kinase 7	protein-coding
171918	chr4	851651	851950	+	0	NA	exon (NM_005255, exon 25 of 28)	exon (NM_005255, exon 25 of 28)	-25671	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
60457	chr13	41032801	41033000	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	-13584	NM_172373	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
8236	chr1	39719921	39720500	+	0	NA	Intergenic	Intergenic	-18635	NR_036544	10450		NM_006112	ENSG00000084072	PPIE	CYP-33|CYP33|CypE	peptidylprolyl isomerase E	protein-coding
150104	chr21	37447721	37448130	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	27626	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
183002	chr5	72314871	72315050	+	0	NA	intron (NM_001286751, intron 1 of 10)	intron (NM_001286751, intron 1 of 10)	5280	NM_001286751	23107		NM_015084	ENSG00000113048	MRPS27	MRP-S27|S27mt|mS27	mitochondrial ribosomal protein S27	protein-coding
53166	chr12	57965851	57965950	+	0	NA	Intergenic	Intergenic	24333	NM_033276	91419		NM_033276	ENSG00000166896	ATP23	KUB3|XRCC6BP1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding
185738	chr5	132098051	132098400	+	0	NA	Intergenic	Intergenic	24436	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
60935	chr13	46312601	46312800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-14856	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
33131	chr10	112370801	112371230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3101	NM_203379	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
24724	chr1	247487101	247487380	+	0	NA	Intergenic	Intergenic	-3828	NM_001004698								
11275	chr1	89123001	89123200	+	0	NA	intron (NM_004120, intron 1 of 10)	L1MC4a|LINE|L1	3014	NM_004120	2634		NM_004120	ENSG00000162645	GBP2	-	guanylate binding protein 2	protein-coding
75558	chr15	66966471	66966630	+	0	NA	Intergenic	L1MC3|LINE|L1	-10035	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
116006	chr19	17121021	17121280	+	0	NA	intron (NM_004145, intron 2 of 39)	AluSz6|SINE|Alu	28915	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
175754	chr4	77755971	77756130	+	0	NA	intron (NM_144571, intron 5 of 11)	AluSx|SINE|Alu	63014	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
3021	chr1	12088601	12089730	+	0	NA	intron (NM_001243, intron 2 of 14)	intron (NM_001243, intron 2 of 14)	25788	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
193522	chr6	30587401	30587600	+	0	NA	intron (NM_001090, intron 19 of 23).3	AluSp|SINE|Alu	3168	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
7042	chr1	31941721	31942700	+	0	NA	Intergenic	AluSg|SINE|Alu	-3842	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
6996	chr1	31845321	31845580	+	0	NA	Intergenic	Intergenic	-29399	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
136164	chr2	174362751	174362850	+	0	NA	intron (NM_004882, intron 7 of 9)	L1MCa|LINE|L1	27846	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
121821	chr19	47946601	47947050	+	0	NA	Intergenic	Intergenic	1903	NR_024216	100169959		NR_024216		SNAR-A13	-	small NF90 (ILF3) associated RNA A13	snRNA
234691	chrX	20385171	20385330	+	0	NA	Intergenic	Intergenic	-118341	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
148664	chr21	6122371	6124350	+	0	NA	3' UTR (NM_001320643, exon 14 of 14)	3' UTR (NM_001320643, exon 14 of 14)	12229	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
115861	chr19	16554451	16554930	+	0	NA	intron (NM_024881, intron 5 of 5)	AluSx1|SINE|Alu	-12253	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
32358	chr10	102385001	102385400	+	0	NA	Intergenic	Intergenic	-8910	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
33838	chr10	124220651	124220950	+	0	NA	Intergenic	Intergenic	-127202	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
54789	chr12	94244071	94244600	+	0	NA	intron (NM_005761, intron 12 of 30)	intron (NM_005761, intron 12 of 30)	-18284	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
178549	chr4	151103221	151103480	+	0	NA	promoter-TSS (NR_000007)	promoter-TSS (NR_000007)	-477	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
219065	chr8	65809401	65810000	+	0	NA	intron (NM_001242318, intron 1 of 12)	L1PA6|LINE|L1	-20643	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
74119	chr15	55188721	55188980	+	0	NA	intron (NM_016304, intron 3 of 5)	intron (NM_016304, intron 3 of 5)	8091	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
52652	chr12	56294951	56295250	+	0	NA	intron (NM_004077, intron 1 of 10)	AluSz6|SINE|Alu	5230	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
166930	chr3	125118401	125118850	+	0	NA	intron (NM_024628, intron 8 of 13)	AluJb|SINE|Alu	32927	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
78578	chr15	93030051	93030150	+	0	NA	Intergenic	Intergenic	43056	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
2986	chr1	12011671	12012350	+	0	NA	3' UTR (NM_001127660, exon 18 of 18)	3' UTR (NM_001127660, exon 18 of 18)	-7488	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
70760	chr14	103423001	103423400	+	0	NA	intron (NM_002376, intron 2 of 15)	intron (NM_002376, intron 2 of 15)	37785	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
130018	chr2	74201071	74201430	+	0	NA	intron (NM_006636, intron 1 of 7)	AluSz|SINE|Alu	2635	NM_006636	10797		NM_006636	ENSG00000065911	MTHFD2	NMDMC	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	protein-coding
123590	chr19	54468321	54469150	+	0	NA	intron (NM_145057, intron 2 of 2).4	AluJb|SINE|Alu	4561	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
138390	chr2	204145221	204145850	+	0	NA	Intergenic	Intergenic	208772	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
173672	chr4	14921621	14922000	+	0	NA	intron (NR_038857, intron 7 of 7)	Tigger3c|DNA|TcMar-Tigger	-33641	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
164071	chr3	53890701	53892780	+	0	NA	intron (NM_021237, intron 1 of 4)	CpG	119	NM_021237	58515		NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
94216	chr17	28614201	28614730	+	0	NA	promoter-TSS (NM_001174103)	promoter-TSS (NM_001174103)	-280	NM_001174103	124923		NM_144610	ENSG00000167524	RSKR	SGK494	ribosomal protein S6 kinase related	protein-coding
230970	chr9	129461721	129462000	+	0	NA	Intergenic	AluSq|SINE|Alu	-26800	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
155538	chr22	38709501	38710180	+	0	NA	intron (NM_004286, intron 2 of 11)	intron (NM_004286, intron 2 of 11)	3896	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
66384	chr14	61489251	61489580	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	80779	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
31592	chr10	97354501	97354900	+	0	NA	Intergenic	AluSq2|SINE|Alu	-19971	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
228076	chr9	96379871	96380030	+	0	NA	intron (NR_104627, intron 1 of 12)	AluSx1|SINE|Alu	3760	NR_104627	11046		NM_007001	ENSG00000130958	SLC35D2	HFRC1|SQV7L|UGTrel8|hfrc	solute carrier family 35 member D2	protein-coding
104945	chr17	81940051	81940750	+	0	NA	3' UTR (NM_001145113, exon 3 of 3)	3' UTR (NM_001145113, exon 3 of 3)	-3072	NM_001282280	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
150472	chr21	42593271	42593780	+	0	NA	Intergenic	(CCCCGG)n|Simple_repeat|Simple_repeat	21570	NR_131192	101928233		NR_131192	ENSG00000225431	LINC01671	-	long intergenic non-protein coding RNA 1671	ncRNA
106804	chr18	23963501	23963750	+	0	NA	Intergenic	Intergenic	-29262	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
32196	chr10	101766901	101767100	+	0	NA	Intergenic	Intergenic	9114	NM_033164	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
20835	chr1	201530951	201531050	+	0	NA	intron (NR_160748, intron 2 of 2)	intron (NR_160748, intron 2 of 2)	11096	NR_026667	376693		NR_026667		RPS10P7	RPS10_2_147|lnc-MCEI	ribosomal protein S10 pseudogene 7	pseudo
207893	chr7	50409901	50410680	+	0	NA	Intergenic	Intergenic	40060	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
70795	chr14	103533801	103534000	+	0	NA	intron (NM_152307, intron 3 of 3)	MIRc|SINE|MIR	4704	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
21366	chr1	205093551	205093650	+	0	NA	intron (NM_001193272, intron 13 of 13)	intron (NM_001193272, intron 13 of 13)	-9140	NM_203376	388730		NM_203376	ENSG00000174529	TMEM81	HC3107|KVLA2788|UNQ2788	transmembrane protein 81	protein-coding
224432	chr9	15299221	15300830	+	0	NA	intron (NM_152574, intron 1 of 19)	intron (NM_152574, intron 1 of 19)	7335	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
96754	chr17	41703271	41703430	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8981	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
11622	chr1	91728871	91729280	+	0	NA	intron (NR_036634, intron 7 of 17)	(AC)n|Simple_repeat|Simple_repeat	157076	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
80886	chr16	3657601	3657800	+	0	NA	TTS (NM_001272049)	TTS (NM_001272049)	2996	NM_001351825	1773		NM_005223	ENSG00000213918	DNASE1	DNL1|DRNI	deoxyribonuclease 1	protein-coding
136505	chr2	177238771	177239030	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	17110	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
184337	chr5	96952851	96953730	+	0	NA	intron (NM_005575, intron 1 of 17)	intron (NM_005575, intron 1 of 17)	-5143	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
27733	chr10	35091921	35092180	+	0	NA	Intergenic	AluJo|SINE|Alu	-1436	NM_001198777	8453		NM_003591	ENSG00000108094	CUL2	-	cullin 2	protein-coding
24212	chr1	236103451	236104100	+	0	NA	Intergenic	Intergenic	-38685	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
77893	chr15	89129201	89129750	+	0	NA	intron (NM_152924, intron 3 of 10)	intron (NM_152924, intron 3 of 10)	41019	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
182769	chr5	68305171	68305330	+	0	NA	Intergenic	L2a|LINE|L2	12673	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
77922	chr15	89314551	89314650	+	0	NA	intron (NM_018193, intron 34 of 36)	intron (NM_018193, intron 34 of 36)	12210	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
204195	chr7	2497701	2498100	+	0	NA	Intergenic	Intergenic	-14629	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
176782	chr4	102503451	102504700	+	0	NA	intron (NM_001382625, intron 1 of 24)	intron (NM_001382625, intron 1 of 24)	-1589	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
181106	chr5	36977851	36978150	+	0	NA	intron (NM_133433, intron 9 of 46)	L1PA17|LINE|L1	101231	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
196378	chr6	43252871	43253880	+	0	NA	intron (NM_032538, intron 4 of 14)	intron (NM_032538, intron 4 of 14)	9894	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
51236	chr12	50914671	50915030	+	0	NA	Intergenic	AluYf1|SINE|Alu	-10165	NM_014033	25840		NM_014033	ENSG00000185432	TMT1A	AAM-B|AAMB|METTL7A	thiol methyltransferase 1A	protein-coding
31261	chr10	92115051	92115150	+	0	NA	intron (NM_014912, intron 6 of 9)	intron (NM_014912, intron 6 of 9)	128179	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
35269	chr11	910021	911500	+	0	NA	promoter-TSS (NM_001142676)	promoter-TSS (NM_001142676)	50	NM_001142676	66005		NM_023947	ENSG00000177830	CHID1	GL008|SI-CLP|SICLP	chitinase domain containing 1	protein-coding
91362	chr17	4536301	4536880	+	0	NA	intron (NM_001124758, intron 11 of 12)	intron (NM_001124758, intron 11 of 12)	18794	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
180839	chr5	32547671	32547830	+	0	NA	Intergenic	AluJb|SINE|Alu	-37807	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
220720	chr8	102010671	102010860	+	0	NA	intron (NM_001040625, intron 3 of 6)	intron (NM_001040625, intron 3 of 6)	26333	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
19509	chr1	175197571	175197730	+	0	NA	Intergenic	Intergenic	-4663	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
150565	chr21	43105151	43105450	+	0	NA	intron (NM_001025204, intron 1 of 8).2	intron (NM_001025204, intron 1 of 8).2	2270	NM_006758	7307		NM_006758	ENSG00000160201	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
181253	chr5	39211391	39212550	+	0	NA	intron (NM_018594, intron 1 of 18)	intron (NM_018594, intron 1 of 18)	7593	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
155247	chr22	37951121	37951380	+	0	NA	intron (NM_001207062, intron 2 of 5)	AluJr|SINE|Alu	2351	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
23403	chr1	228269601	228270030	+	0	NA	intron (NM_052843, intron 17 of 80)	CpG	-56151	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
61906	chr13	77474851	77475300	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-60599	NM_001160706	8796		NM_003843	ENSG00000136155	SCEL	-	sciellin	protein-coding
92649	chr17	10320821	10321080	+	0	NA	intron (NM_003802, intron 24 of 40)	intron (NM_003802, intron 24 of 40)	52056	NM_003802	8735		NM_003802	ENSG00000006788	MYH13	MyHC-IIL|MyHC-eo	myosin heavy chain 13	protein-coding
165950	chr3	107660371	107660800	+	0	NA	intron (NM_020235, intron 3 of 16)	intron (NM_020235, intron 3 of 16)	137623	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
98247	chr17	46169971	46171480	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	22057	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
8280	chr1	39956551	39956650	+	0	NA	intron (NM_001287808, intron 1 of 11)	intron (NM_001287808, intron 1 of 11)	1455	NM_001349822	84879		NM_032793	ENSG00000168389	MFSD2A	HsMFSD2A|MCPH15|MFSD2|NEDMISBA|NLS1|SLC59A1	MFSD2 lysolipid transporter A, lysophospholipid	protein-coding
162498	chr3	48572501	48572700	+	0	NA	intron (NM_000094, intron 88 of 118)	intron (NM_000094, intron 88 of 118)	6377	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
195709	chr6	38773371	38773530	+	0	NA	intron (NM_001371, intron 11 of 91)	intron (NM_001371, intron 11 of 91)	58139	NM_001206927	1769		NM_001371	ENSG00000124721	DNAH8	ATPase|SPGF46|hdhc9	dynein axonemal heavy chain 8	protein-coding
64342	chr14	24036001	24037130	+	0	NA	promoter-TSS (NM_001282991)	promoter-TSS (NM_001282991)	81	NM_001282990	10901		NM_021004	ENSG00000157326	DHRS4	CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2	dehydrogenase/reductase 4	protein-coding
155323	chr22	38213221	38213680	+	0	NA	intron (NM_001161573, intron 1 of 2)	L2a|LINE|L2	10430	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
188602	chr5	157185251	157185830	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	4700	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
42388	chr11	68875221	68875680	+	0	NA	Intergenic	MER21-int|LTR|ERVL	28382	NM_181514	219927		NM_181512	ENSG00000197345	MRPL21	L21mt|MRP-L21|bL21m	mitochondrial ribosomal protein L21	protein-coding
156558	chr22	41444021	41444960	+	0	NA	intron (NM_016272, intron 1 of 1)	intron (NM_016272, intron 1 of 1)	2311	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
83684	chr16	28416721	28417200	+	0	NA	intron (NM_001199142, intron 1 of 21)	SVA_F|Retroposon|SVA	9494	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
143064	chr20	21514021	21514580	+	0	NA	promoter-TSS (NM_002509)	promoter-TSS (NM_002509)	-236	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
65720	chr14	52950421	52952000	+	0	NA	promoter-TSS (NM_001135000)	promoter-TSS (NM_001135000)	-113	NM_001134999	10979		NM_006832	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	FERM domain containing kindlin 2	protein-coding
42512	chr11	70364951	70365930	+	0	NA	intron (NM_001378006, intron 24 of 31)	intron (NM_001378006, intron 24 of 31)	-33066	NM_138565	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
165600	chr3	101668371	101668930	+	0	NA	intron (NM_014415, intron 3 of 10)	L1MA5|LINE|L1	-7780	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
41116	chr11	65555021	65555280	+	0	NA	intron (NM_001164266, intron 1 of 26)	(GGCCCT)n|Simple_repeat|Simple_repeat	3078	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
39071	chr11	47982871	47983030	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	2391	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
138127	chr2	202296721	202297200	+	0	NA	intron (NM_015934, intron 10 of 14)	AluY|SINE|Alu	3909	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
208129	chr7	60338351	60338450	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2888223	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
119424	chr19	40286821	40287680	+	0	NA	Intergenic	AluSc|SINE|Alu	-1905	NM_001626	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
146627	chr20	50186151	50187050	+	0	NA	intron (NR_125739, intron 6 of 6)	MIRb|SINE|MIR	-3983	NM_001285878	1051		NM_005194	ENSG00000172216	CEBPB	C/EBP-beta|IL6DBP|NF-IL6|TCF5	CCAAT enhancer binding protein beta	protein-coding
188952	chr5	160494001	160494200	+	0	NA	Intergenic	LTR33|LTR|ERVL	8748	NR_029701	406938		NR_029701	ENSG00000283733	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
184012	chr5	91219871	91220100	+	0	NA	Intergenic	Intergenic	94417	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
29383	chr10	70091751	70092580	+	0	NA	intron (NM_018649, intron 4 of 8)	MLT1A0|LTR|ERVL-MaLR	39319	NM_018649	55506		NM_018649	ENSG00000099284	MACROH2A2	H2AFY2	macroH2A.2 histone	protein-coding
237258	chrX	110267901	110268300	+	0	NA	intron (NM_001171689, intron 3 of 7)	intron (NM_001171689, intron 3 of 7)	-43040	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
64708	chr14	34093721	34093980	+	0	NA	Intergenic	L2c|LINE|L2	-142776	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
170093	chr3	183017851	183018290	+	0	NA	intron (NR_120639, intron 14 of 15)	intron (NR_120639, intron 14 of 15)	-32152	NM_001308101	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
57051	chr12	120873371	120873600	+	0	NA	intron (NM_139015, intron 1 of 10)	L1MB3|LINE|L1	30873	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
110221	chr19	1757721	1758450	+	0	NA	intron (NM_001080488, intron 1 of 1)	intron (NM_001080488, intron 1 of 1)	4579	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
207771	chr7	50162451	50162950	+	0	NA	Intergenic	LTR32|LTR|ERVL	66817	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
182228	chr5	56897121	56897380	+	0	NA	Intergenic	L1MC4|LINE|L1	-12010	NM_001323022	133383		NM_153706	ENSG00000155542	SETD9	C5orf35	SET domain containing 9	protein-coding
183381	chr5	77629321	77629580	+	0	NA	3' UTR (NM_032109, exon 3 of 3)	3' UTR (NM_032109, exon 3 of 3)	9263	NM_032109	23440		NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding
130273	chr2	84872171	84872330	+	0	NA	intron (NM_001307978, intron 1 of 4)	AluJb|SINE|Alu	8834	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
76250	chr15	73998201	73998580	+	0	NA	exon (NM_002675, exon 2 of 8)	exon (NM_002675, exon 2 of 8)	3674	NM_033244	5371		NM_002675	ENSG00000140464	PML	MYL|PP8675|RNF71|TRIM19	PML nuclear body scaffold	protein-coding
172395	chr4	1772801	1773200	+	0	NA	Intergenic	Intergenic	-20293	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
60419	chr13	40980251	40980820	+	0	NA	intron (NM_001370329, intron 2 of 9)	MER112|DNA|hAT-Charlie	1747	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
231392	chr9	130770921	130771200	+	0	NA	intron (NM_007313, intron 1 of 10)	intron (NM_007313, intron 1 of 10)	57179	NM_007313	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
43347	chr11	76669021	76669480	+	0	NA	intron (NM_001370191, intron 1 of 2)	intron (NM_001370191, intron 1 of 2)	688	NM_001370189	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
58724	chr12	132585651	132586150	+	0	NA	TTS (NM_001142641)	TTS (NM_001142641)	3903	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
179885	chr5	658201	658600	+	0	NA	intron (NR_164122, intron 13 of 15)	ERV3-16A3_LTR|LTR|ERVL	34952	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
90264	chr17	975551	975650	+	0	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	4176	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
19065	chr1	169902751	169903080	+	0	NA	Intergenic	Intergenic	-8956	NM_181093	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
202820	chr6	159689721	159690580	+	0	NA	TTS (NM_001322816)	TTS (NM_001322816)	3091	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
2348	chr1	9239421	9240280	+	0	NA	promoter-TSS (NM_001282587)	promoter-TSS (NM_001282587)	3	NM_001282587	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
160797	chr3	32976921	32977180	+	0	NA	Intergenic	LTR85a|LTR|Gypsy?	25406	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
226786	chr9	76656071	76656230	+	0	NA	intron (NM_001308047, intron 9 of 17)	intron (NM_001308047, intron 9 of 17)	36265	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
61337	chr13	50676321	50676810	+	0	NA	Intergenic	L3|LINE|CR1	-131290	NR_046551	100874074		NR_046551	ENSG00000176124	DLEU7-AS1	-	DLEU7 antisense RNA 1	ncRNA
130540	chr2	85661071	85662480	+	0	NA	intron (NM_000542, intron 9 of 10)	intron (NM_000542, intron 9 of 10)	6424	NM_001367281	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
239178	chrY	12526651	12526950	+	0	NA	Intergenic	Intergenic	-105210	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
195631	chr6	37843921	37844200	+	0	NA	intron (NM_021943, intron 1 of 5)	AluJb|SINE|Alu	24333	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
86718	chr16	67560321	67560580	+	0	NA	TTS (NR_158165)	TTS (NR_158165)	1859	NR_158165	107984813		NR_158165	ENSG00000259804	CTCF-DT	-	CTCF divergent transcript	ncRNA
108144	chr18	62534071	62534430	+	0	NA	intron (NM_017742, intron 1 of 13)	AluJb|SINE|Alu	11225	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
219449	chr8	73010601	73010800	+	0	NA	intron (NM_003218, intron 1 of 8)	LTR54|LTR|ERV1	1836	NM_017489	7013		NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding
82883	chr16	21555801	21556180	+	0	NA	Intergenic	Intergenic	-35546	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
170399	chr3	185270551	185270730	+	0	NA	Intergenic	LTR75B|LTR|ERVL	-12321	NM_001242314	9175		NM_004721	ENSG00000073803	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
231143	chr9	129862371	129863530	+	0	NA	intron (NM_001110303, intron 8 of 25)	MLT1B|LTR|ERVL-MaLR	-6655	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
135420	chr2	161139021	161140280	+	0	NA	intron (NM_133484, intron 1 of 3)	intron (NM_133484, intron 1 of 3)	2687	NM_004180	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
45623	chr11	118917371	118918600	+	0	NA	intron (NM_001378213, intron 2 of 9)	intron (NM_001378213, intron 2 of 9)	7277	NR_039713	100616376		NR_039713	ENSG00000264211	MIR4492	mir-4492	microRNA 4492	ncRNA
50205	chr12	46196371	46196600	+	0	NA	intron (NM_001278390, intron 16 of 16)	intron (NM_001278390, intron 16 of 16)	70031	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
19090	chr1	171245501	171245730	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-2856	NM_001282694	2326		NM_002021	ENSG00000010932	FMO1	-	flavin containing dimethylaniline monoxygenase 1	protein-coding
190808	chr6	1388001	1388550	+	0	NA	Intergenic	Intergenic	-1301	NM_001452	2295		NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
174897	chr4	48986071	48986230	+	0	NA	promoter-TSS (NM_001286791)	promoter-TSS (NM_001286791)	-125	NM_025087	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
116935	chr19	18841621	18841980	+	0	NA	intron (NM_001297549, intron 1 of 23)	intron (NM_001297549, intron 1 of 23)	9841	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
6412	chr1	28029021	28029480	+	0	NA	intron (NR_104214, intron 6 of 16)	Tigger15a|DNA|TcMar-Tigger	59360	NM_001282560	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
91802	chr17	7034221	7034480	+	0	NA	Intergenic	MIR|SINE|MIR	-1665	NM_201566	201232		NM_201566	ENSG00000174327	SLC16A13	MCT13	solute carrier family 16 member 13	protein-coding
28789	chr10	62076751	62077050	+	0	NA	intron (NM_001244638, intron 5 of 6)	intron (NM_001244638, intron 5 of 6)	27543	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
48606	chr12	10357901	10358100	+	0	NA	Intergenic	L1P3|LINE|L1	-5769	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
149374	chr21	29849701	29849910	+	0	NA	intron (NM_001330993, intron 1 of 16)	intron (NM_001330993, intron 1 of 16)	90191	NM_001320618	2897		NM_000830	ENSG00000171189	GRIK1	EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5	glutamate ionotropic receptor kainate type subunit 1	protein-coding
217647	chr8	30073821	30074450	+	0	NA	intron (NM_016127, intron 1 of 5)	intron (NM_016127, intron 1 of 5)	8929	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
224484	chr9	16679251	16679550	+	0	NA	intron (NM_001317940, intron 2 of 5)	intron (NM_001317940, intron 2 of 5)	-47414	NR_151723	111216284		NR_151723	ENSG00000234779	BNC2-AS1	-	BNC2 antisense RNA 1	ncRNA
176633	chr4	99845421	99846230	+	0	NA	intron (NM_014395, intron 3 of 8)	intron (NM_014395, intron 3 of 8)	28998	NM_014395	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
204575	chr7	5239951	5241630	+	0	NA	Intergenic	Intergenic	26521	NM_001033520	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
1003	chr1	1850071	1850380	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSp|SINE|Alu	40862	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
97910	chr17	45131151	45131330	+	0	NA	intron (NM_133373, intron 1 of 14)	intron (NM_133373, intron 1 of 14)	1275	NM_133373	113026		NM_133373	ENSG00000161714	PLCD3	PLC-delta-3	phospholipase C delta 3	protein-coding
84593	chr16	30655701	30656600	+	0	NA	exon (NM_001320464, exon 12 of 12)	exon (NM_001320464, exon 12 of 12)	-2281	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
212692	chr7	129768471	129768830	+	0	NA	Intergenic	Intergenic	1842	NR_029614	406958		NR_029614	ENSG00000207990	MIR182	MIRN182|miRNA182|mir-182	microRNA 182	ncRNA
178072	chr4	140094551	140095200	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-33140	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
2930	chr1	11740571	11741450	+	0	NA	intron (NM_001040195, intron 1 of 3)	L2b|LINE|L2	4874	NM_020350	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
155029	chr22	37471001	37471400	+	0	NA	intron (NR_029413, intron 6 of 6)	intron (NR_029413, intron 6 of 6)	15184	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
6546	chr1	28640801	28641200	+	0	NA	intron (NM_005644, intron 1 of 5)	AluJr4|SINE|Alu	2067	NM_005644	6883		NM_005644	ENSG00000120656	TAF12	TAF2J|TAFII20	TATA-box binding protein associated factor 12	protein-coding
209355	chr7	76271021	76271400	+	0	NA	intron (NM_001291831, intron 11 of 15)	AluJr|SINE|Alu	-31463	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
186758	chr5	139324321	139324680	+	0	NA	intron (NM_199189, intron 15 of 17)	AluSx1|SINE|Alu	-17332	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
82721	chr16	20944921	20945280	+	0	NA	intron (NM_017539, intron 57 of 61)	MER41B|LTR|ERV1	43838	NR_161432	57149		NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
138292	chr2	203715371	203715730	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	8911	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
174436	chr4	39636551	39637050	+	0	NA	intron (NM_001317896, intron 1 of 5)	MER44A|DNA|TcMar-Tigger	2065	NM_001317896	201895		NM_174921	ENSG00000163683	SMIM14	C4orf34	small integral membrane protein 14	protein-coding
234874	chrX	29333201	29333400	+	0	NA	intron (NM_014271, intron 3 of 10)	SVA_E|Retroposon|SVA	-240978	NR_049877	100847047		NR_049877	ENSG00000264090	MIR4666B	-	microRNA 4666b	ncRNA
162466	chr3	48505501	48505700	+	0	NA	promoter-TSS (NM_001272067)	promoter-TSS (NM_001272067)	-774	NM_001272066	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
187148	chr5	140550401	140550680	+	0	NA	TTS (NM_003732)	TTS (NM_003732)	2878	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
144554	chr20	35734171	35735230	+	0	NA	TTS (NR_136587)	TTS (NR_136587)	7560	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
208994	chr7	74252871	74253480	+	0	NA	intron (NM_002914, intron 1 of 9)	intron (NM_002914, intron 1 of 9)	1224	NM_181471	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
176734	chr4	101340621	101341480	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	6476	NM_001130691	5530		NM_000944	ENSG00000138814	PPP3CA	ACCIID|CALN|CALNA|CALNA1|CCN1|CNA1|DEE91|IECEE|IECEE1|PPP2B	protein phosphatase 3 catalytic subunit alpha	protein-coding
74157	chr15	55276991	55278730	+	0	NA	intron (NM_183235, intron 1 of 6)	MER81|DNA|hAT-Blackjack	-6938	NM_183236	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
21806	chr1	207207021	207207330	+	0	NA	Intergenic	L1PA4|LINE|L1	102942	NM_000715	722		NM_000715	ENSG00000123838	C4BPA	C4BP|PRP	complement component 4 binding protein alpha	protein-coding
204462	chr7	4681701	4683200	+	0	NA	exon (NM_001037165, exon 1 of 9)	exon (NM_001037165, exon 1 of 9)	155	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
100374	chr17	60118851	60119430	+	0	NA	Intergenic	Intergenic	-16221	NR_027408	653653		NR_027408	ENSG00000293358	LOC653653	-	adaptor related protein complex 1 subunit sigma 2 pseudogene	pseudo
131993	chr2	100560621	100560880	+	0	NA	Intergenic	AluSg|SINE|Alu	-2243	NM_024065	79031		NM_024065	ENSG00000115539	PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin like 3	protein-coding
193277	chr6	30005321	30005580	+	0	NA	promoter-TSS (NR_024240)	promoter-TSS (NR_024240)	-521	NR_024240	3137		NR_024240	ENSG00000290574	HLA-J	CDA12|D6S203|HLA-59|HLA-CDA12	major histocompatibility complex, class I, J (pseudogene)	pseudo
36730	chr11	9246421	9247130	+	0	NA	intron (NM_001243254, intron 1 of 22)	LTR39|LTR|ERV1	18551	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
123170	chr19	52229171	52229330	+	0	NA	non-coding (NR_033500, exon 14 of 14)	non-coding (NR_033500, exon 14 of 14)	7230	NR_106859	102466984		NR_106859	ENSG00000274380	MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
1493	chr1	2759571	2759930	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	41118	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
196219	chr6	42784401	42785450	+	0	NA	non-coding (NR_134654, exon 1 of 2)	non-coding (NR_134654, exon 1 of 2)	1429	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
30193	chr10	74586001	74586700	+	0	NA	intron (NM_001369123, intron 7 of 9)	intron (NM_001369123, intron 7 of 9)	-57026	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
125306	chr2	10658921	10659180	+	0	NA	intron (NM_024894, intron 10 of 20)	intron (NM_024894, intron 10 of 20)	30925	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
223676	chr8	144399951	144400650	+	0	NA	promoter-TSS (NR_031600)	promoter-TSS (NR_031600)	45	NR_106908	102466749		NR_106908	ENSG00000283770	MIR6849	hsa-mir-6849	microRNA 6849	ncRNA
58212	chr12	127108671	127108900	+	0	NA	Intergenic	Intergenic	-48388	NR_104646	101927592		NR_104646	ENSG00000249345	LINC02405	-	long intergenic non-protein coding RNA 2405	ncRNA
206282	chr7	29955821	29956330	+	0	NA	intron (NM_001145515, intron 1 of 6)	intron (NM_001145515, intron 1 of 6)	33726	NM_014766	9805		NM_014766	ENSG00000136193	SCRN1	SES1	secernin 1	protein-coding
121190	chr19	46520201	46520930	+	0	NA	intron (NM_001370551, intron 3 of 3)	MLT1H|LTR|ERVL-MaLR	-24698	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
113921	chr19	10707401	10707600	+	0	NA	exon (NM_031209, exon 5 of 10)	exon (NM_031209, exon 5 of 10)	6061	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
236528	chrX	72104971	72106350	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	26255	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
214244	chr7	148879551	148880250	+	0	NA	intron (NM_001203248, intron 1 of 19)	AluJr|SINE|Alu	3585	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
191297	chr6	6654371	6655130	+	0	NA	3' UTR (NM_004271, exon 5 of 5)	3' UTR (NM_004271, exon 5 of 5)	-31924	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
134826	chr2	148552721	148553980	+	0	NA	Intergenic	L2|LINE|L2	-91401	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
221696	chr8	126876601	126876880	+	0	NA	Intergenic	Intergenic	-136414	NR_045262	100750225		NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1|PiHL	prostate cancer associated transcript 1	ncRNA
40436	chr11	64198501	64198900	+	0	NA	intron (NM_001282653, intron 8 of 13)	intron (NM_001282653, intron 8 of 13)	-7220	NM_001382448	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
220593	chr8	100904371	100904730	+	0	NA	Intergenic	AluY|SINE|Alu	46021	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
206913	chr7	38179671	38180250	+	0	NA	intron (NM_001363344, intron 2 of 8)	L2a|LINE|L2	1715	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
68220	chr14	76922251	76923180	+	0	NA	Intergenic	(TCTCTC)n|Simple_repeat|Simple_repeat	-36923	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
74359	chr15	58699301	58699500	+	0	NA	intron (NM_001320570, intron 2 of 14)	L1MA4A|LINE|L1	-5793	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
60843	chr13	45464371	45466150	+	0	NA	intron (NM_031431, intron 1 of 22)	CpG	321	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
165422	chr3	98343871	98344130	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-9854	NM_001005517	403278		NM_001005517	ENSG00000196098	OR5K4	-	olfactory receptor family 5 subfamily K member 4	protein-coding
9624	chr1	52414601	52415150	+	0	NA	intron (NM_032864, intron 8 of 9)	intron (NM_032864, intron 8 of 9)	10273	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
133973	chr2	130730551	130730650	+	0	NA	TTS (NM_207364)	TTS (NM_207364)	1530	NM_207364	344561		NM_207364	ENSG00000173302	GPR148	BTR|PGR6	G protein-coupled receptor 148	protein-coding
239062	chrY	7292421	7292880	+	0	NA	intron (NR_028062, intron 1 of 7)	AluSx1|SINE|Alu	18678	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
197486	chr6	75604901	75605100	+	0	NA	intron (NM_015571, intron 1 of 23)	AluSx|SINE|Alu	3120	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
54691	chr12	93418121	93418380	+	0	NA	intron (NM_003348, intron 1 of 3)	AluJr4|SINE|Alu	23697	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
123624	chr19	54558471	54558630	+	0	NA	Intergenic	Intergenic	-14438	NM_006866	11027		NM_006866	ENSG00000239998	LILRA2	CD85H|ILT1|LIR-7|LIR7	leukocyte immunoglobulin like receptor A2	protein-coding
73607	chr15	44557201	44557400	+	0	NA	intron (NM_001284335, intron 5 of 6)	Charlie4a|DNA|hAT-Charlie	20153	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
95747	chr17	38597721	38598050	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	8067	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
188420	chr5	154196571	154197580	+	0	NA	intron (NM_198321, intron 1 of 11)	MIR3|SINE|MIR	6342	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
229289	chr9	120780201	120780600	+	0	NA	intron (NM_001375888, intron 3 of 7)	MER33|DNA|hAT-Charlie	13016	NM_001375890	26190		NM_012164	ENSG00000119402	FBXW2	FBW2|Fwd2|Md6	F-box and WD repeat domain containing 2	protein-coding
81974	chr16	11878201	11878400	+	0	NA	intron (NM_001130007, intron 11 of 14)	AluSq|SINE|Alu	-26758	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
15921	chr1	151719801	151721850	+	0	NA	promoter-TSS (NM_001144956)	promoter-TSS (NM_001144956)	-697	NM_001144956	284485		NM_001144956	ENSG00000178796	RIIAD1	C1orf230|NCRNA00166	regulatory subunit of type II PKA R-subunit domain containing 1	protein-coding
11929	chr1	93693151	93693550	+	0	NA	intron (NM_001261408, intron 3 of 13)	intron (NM_001261408, intron 3 of 13)	-11513	NM_003567	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
160542	chr3	30670371	30670730	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	63949	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
136984	chr2	190515721	190516480	+	0	NA	intron (NR_136298, intron 6 of 8)	intron (NR_136298, intron 6 of 8)	18622	NM_001142645	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
126067	chr2	25743171	25743930	+	0	NA	exon (NM_001369346, exon 11 of 11)	exon (NM_001369346, exon 11 of 11)	51141	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
77629	chr15	85434001	85434400	+	0	NA	intron (NM_007200, intron 1 of 36)	L1PA2|LINE|L1	53597	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
200326	chr6	133892651	133893480	+	0	NA	TTS (NM_003206)	TTS (NM_003206)	3952	NM_198392	6943		NM_003206	ENSG00000118526	TCF21	POD1|bHLHa23	transcription factor 21	protein-coding
235353	chrX	44328371	44328730	+	0	NA	intron (NM_025184, intron 1 of 14)	MER51A|LTR|ERV1	15122	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
55224	chr12	101822351	101822650	+	0	NA	intron (NM_024312, intron 1 of 20)	LTR78|LTR|ERV1	8459	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
139969	chr2	230877251	230878930	+	0	NA	exon (NM_001012516, exon 5 of 5)	exon (NM_001012516, exon 5 of 5)	-8456	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
209967	chr7	92695571	92695930	+	0	NA	intron (NM_001145306, intron 4 of 7)	intron (NM_001145306, intron 4 of 7)	-105360	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
193026	chr6	28398601	28398900	+	0	NA	promoter-TSS (NM_001368124)	promoter-TSS (NM_001368124)	16	NM_001368124	9753		NM_014724	ENSG00000158691	ZSCAN12	ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2	zinc finger and SCAN domain containing 12	protein-coding
65838	chr14	54900801	54902500	+	0	NA	intron (NM_001024024, intron 1 of 6)	intron (NM_001024024, intron 1 of 6)	1174	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
226264	chr9	68236001	68236230	+	0	NA	Intergenic	Intergenic	-5774	NM_001286836	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
89216	chr16	88621971	88622130	+	0	NA	intron (NM_144604, intron 8 of 17)	intron (NM_144604, intron 8 of 17)	-16522	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
178168	chr4	142370001	142370400	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	32933	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
79031	chr16	69151	69450	+	0	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	3331	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
143408	chr20	29427371	29427750	+	0	NA	Intergenic	Intergenic	-10599	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
199716	chr6	125357601	125357800	+	0	NA	Intergenic	Intergenic	-55733	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
185292	chr5	126539121	126539500	+	0	NA	Intergenic	Intergenic	55909	NM_001202404	501		NM_001182	ENSG00000164904	ALDH7A1	ATQ1|EPD|EPEO4|PDE	aldehyde dehydrogenase 7 family member A1	protein-coding
116502	chr19	18146371	18146530	+	0	NA	intron (NM_015016, intron 24 of 26)	AluJo|SINE|Alu	-6713	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
157228	chr22	43262371	43262530	+	0	NA	intron (NM_173050, intron 5 of 21)	intron (NM_173050, intron 5 of 21)	-13492	NR_134582	101927447		NR_134582	ENSG00000203527	SCUBE1-AS1	-	SCUBE1 antisense RNA 1	ncRNA
52959	chr12	57466051	57466400	+	0	NA	intron (NM_001160045, intron 5 of 9)	intron (NM_001160045, intron 5 of 9)	6074	NM_001167609	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
114047	chr19	10971371	10971600	+	0	NA	intron (NM_001374457, intron 1 of 33)	intron (NM_001374457, intron 1 of 33)	10455	NM_001128849	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
168290	chr3	141503051	141503350	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	16173	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
129013	chr2	64864951	64865980	+	0	NA	Intergenic	CpG	-1834	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
221940	chr8	129891571	129891950	+	0	NA	intron (NM_001353311, intron 4 of 13)	MIR1_Amn|SINE|MIR	48051	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
67745	chr14	73644221	73645500	+	0	NA	promoter-TSS (NM_001201366)	promoter-TSS (NM_001201366)	-126	NM_031427	83544		NM_031427	ENSG00000119661	DNAL1	C14orf168|CILD16|LC1	dynein axonemal light chain 1	protein-coding
183506	chr5	79513501	79515250	+	0	NA	promoter-TSS (NM_004272)	promoter-TSS (NM_004272)	-241	NM_004272	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
174391	chr4	39047571	39047730	+	0	NA	intron (NM_001171654, intron 1 of 10)	intron (NM_001171654, intron 1 of 10)	2819	NM_001007075	51088		NM_015990	ENSG00000109790	KLHL5	-	kelch like family member 5	protein-coding
175830	chr4	78059571	78059830	+	0	NA	intron (NM_025074, intron 1 of 73)	intron (NM_025074, intron 1 of 73)	2130	NM_001166133	80144		NM_020875	ENSG00000138759	FRAS1	FRASRS1	Fraser extracellular matrix complex subunit 1	protein-coding
61139	chr13	48595551	48595930	+	0	NA	Intergenic	Intergenic	-14839	NR_051983	100129597		NR_051983	ENSG00000233610	LINC00462	-	long intergenic non-protein coding RNA 462	ncRNA
65131	chr14	44966271	44966430	+	0	NA	intron (NR_131765, intron 1 of 19)	AluSx|SINE|Alu	4160	NM_001308120	23116		NM_015091	ENSG00000198718	TOGARAM1	FAM179B|JBTS37|KIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding
123723	chr19	55050671	55050900	+	0	NA	intron (NM_001145971, intron 3 of 6).10	intron (NM_001145971, intron 3 of 6).10	12363	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
39803	chr11	61969951	61970480	+	0	NA	Intergenic	L1M5|LINE|L1	-2581	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
183887	chr5	87324571	87324930	+	0	NA	intron (NM_001364075, intron 8 of 8)	intron (NM_001364075, intron 8 of 8)	-1122	NR_130929	644285		NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
36828	chr11	9858621	9859250	+	0	NA	intron (NM_030962, intron 17 of 39)	intron (NM_030962, intron 17 of 39)	19793	NR_120539	101928008		NR_120539	ENSG00000255476	LOC101928008	-	uncharacterized LOC101928008	ncRNA
110843	chr19	2546671	2546830	+	0	NA	intron (NM_052847, intron 3 of 4)	CpG	70623	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
223649	chr8	144354201	144354900	+	0	NA	TTS (NM_012162)	TTS (NM_012162)	381	NM_001252404	340393		NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
205254	chr7	8127401	8127800	+	0	NA	intron (NR_146928, intron 13 of 14)	intron (NR_146928, intron 13 of 14)	134567	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
43149	chr11	75317971	75318130	+	0	NA	intron (NM_020251, intron 1 of 14)	MER5A|DNA|hAT-Charlie	17136	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
82130	chr16	14725271	14725450	+	0	NA	intron (NM_001277324, intron 7 of 7)	MIRb|SINE|MIR	13671	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
76770	chr15	76996521	76997320	+	0	NA	intron (NR_135552, intron 1 of 11)	intron (NR_135552, intron 1 of 11)	1794	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
112070	chr19	5229371	5229730	+	0	NA	exon (NM_002850, exon 15 of 38)	exon (NM_002850, exon 15 of 38)	111262	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
135602	chr2	168035371	168036400	+	0	NA	intron (NM_013233, intron 14 of 17)	intron (NM_013233, intron 14 of 17)	-94741	NR_131227	105616981		NR_131227	ENSG00000235335	B3GALT1-AS1	-	B3GALT1 antisense RNA 1	ncRNA
202571	chr6	158681251	158681750	+	0	NA	intron (NM_001318745, intron 2 of 14)	AluSx1|SINE|Alu	18097	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
228572	chr9	103723521	103723600	+	0	NA	Intergenic	AluYe5|SINE|Alu	-276149	NR_109803	101928523		NR_109803	ENSG00000285483	LINC03094	lnc-SMC2-1	long intergenic non-protein coding RNA 3094	ncRNA
233372	chr9	137505871	137506030	+	0	NA	intron (NM_001098537, intron 13 of 34)	intron (NM_001098537, intron 13 of 34)	44452	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
21281	chr1	204417271	204417850	+	0	NA	Intergenic	L2c|LINE|L2	-5743	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
25289	chr10	6166651	6166950	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-14538	NR_039698	100628560		NR_039698	ENSG00000283634	MIR3155B	hsa-mir-3155b	microRNA 3155b	ncRNA
153706	chr22	29278801	29279000	+	0	NA	intron (NM_001163286, intron 5 of 15)	AluSx|SINE|Alu	10632	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
106312	chr18	12885621	12886000	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-1475	NM_080422	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
212918	chr7	130910121	130910430	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	3035	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
178196	chr4	142404551	142405900	+	0	NA	exon (NM_001101669, exon 6 of 26)	exon (NM_001101669, exon 6 of 26)	221	NM_001385351	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
114229	chr19	11480901	11481230	+	0	NA	promoter-TSS (NM_032281)	promoter-TSS (NM_032281)	-19	NM_001420	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
36121	chr11	3099071	3099700	+	0	NA	intron (NM_145638, intron 13 of 20)	L1MC2|LINE|L1	-41962	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
24043	chr1	235289171	235289600	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-37831	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
25938	chr10	11344071	11344230	+	0	NA	intron (NR_126062, intron 1 of 2)	intron (NR_126062, intron 1 of 2)	524	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
135952	chr2	172078351	172078650	+	0	NA	intron (NM_001322279, intron 7 of 9)	intron (NM_001322279, intron 7 of 9)	-7007	NM_001038493	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
129319	chr2	68721501	68722280	+	0	NA	Intergenic	Intergenic	-12921	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
185127	chr5	119292951	119293650	+	0	NA	intron (NM_001077654, intron 1 of 1)	L1MA8|LINE|L1	24541	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
190977	chr6	2976071	2976980	+	0	NA	Intergenic	Intergenic	-4732	NM_001297700	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
221668	chr8	125986071	125986430	+	0	NA	Intergenic	L1M6|LINE|L1	-35053	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
228465	chr9	99849021	99849280	+	0	NA	intron (NM_173200, intron 8 of 8)	intron (NM_173200, intron 8 of 8)	27265	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
32811	chr10	109918821	109919450	+	0	NA	intron (NM_020383, intron 1 of 20)	L1MB8|LINE|L1	4111	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
141936	chr20	1263221	1263480	+	0	NA	Intergenic	L1MEf|LINE|L1	-2944	NM_014723	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
55712	chr12	108119351	108119450	+	0	NA	Intergenic	MER54B|LTR|ERVL	-9888	NM_014653	9671		NM_014653	ENSG00000075035	WSCD2	-	WSC domain containing 2	protein-coding
215628	chr8	90651	90750	+	0	NA	intron (NR_168395, intron 2 of 7)	intron (NR_168395, intron 2 of 7)	22402	NR_168395	101927506		NR_168395		LOC101927506	-	uncharacterized LOC101927506	ncRNA
13763	chr1	117014221	117014480	+	0	NA	intron (NM_001256106, intron 4 of 9)	intron (NM_001256106, intron 4 of 9)	12600	NM_004258	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
75182	chr15	64731071	64732030	+	0	NA	Intergenic	Intergenic	-28269	NM_002537	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
199133	chr6	111711051	111711800	+	0	NA	intron (NM_001370529, intron 3 of 11)	intron (NM_001370529, intron 3 of 11)	47706	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
99660	chr17	50717351	50717450	+	0	NA	Intergenic	L2|LINE|L2	-2165	NM_006107	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
31386	chr10	94541471	94542030	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-4017	NM_001289067	3070		NM_018063	ENSG00000119969	HELLS	ICF4|LSH|Nbla10143|PASG|SALNR|SMARCA6	helicase, lymphoid specific	protein-coding
125581	chr2	16652251	16652550	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	13434	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
94298	chr17	28731371	28732200	+	0	NA	intron (NM_178170, intron 1 of 14)	AluYj4|SINE|Alu	2997	NM_178170	284086		NM_178170	ENSG00000160602	NEK8	JCK|NEK12A|NPHP9|RHPD2	NIMA related kinase 8	protein-coding
63269	chr13	113956901	113957100	+	0	NA	intron (NM_001365455, intron 6 of 6)	intron (NM_001365455, intron 6 of 6)	17076	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
145275	chr20	40991471	40991830	+	0	NA	intron (NR_145525, intron 1 of 2)	intron (NR_145525, intron 1 of 2)	10937	NR_145525	100128988		NR_145524		LOC100128988	-	uncharacterized LOC100128988	ncRNA
105057	chr17	82078671	82079730	+	0	NA	exon (NM_004104, exon 43 of 43)	exon (NM_004104, exon 43 of 43)	10940	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
69082	chr14	92042351	92042850	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-2541	NM_001321851	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
191122	chr6	4036351	4036680	+	0	NA	intron (NR_146785, intron 2 of 20)	AluJb|SINE|Alu	15215	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
235059	chrX	40151901	40152660	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	24997	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
152148	chr22	19989321	19989580	+	0	NA	intron (NM_001670, intron 3 of 19)	intron (NM_001670, intron 3 of 19)	25697	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
166803	chr3	122577321	122578480	+	0	NA	intron (NM_001113523, intron 1 of 11)	CpG	250	NM_001308320	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
32118	chr10	101224551	101224950	+	0	NA	Intergenic	CpG	4210	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
19320	chr1	173410871	173411280	+	0	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	50287	NR_125960	101928673		NR_125960	ENSG00000203739	PRDX6-AS1	-	PRDX6 antisense RNA 1	ncRNA
219476	chr8	73665501	73665730	+	0	NA	intron (NM_001164383, intron 1 of 9)	intron (NM_001164383, intron 1 of 9)	81225	NM_001164380	27067		NM_014393	ENSG00000040341	STAU2	39K2|39K3	staufen double-stranded RNA binding protein 2	protein-coding
71015	chr14	104756821	104757550	+	0	NA	intron (NM_006427, intron 3 of 3)	intron (NM_006427, intron 3 of 3)	4038	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
81627	chr16	10874501	10874700	+	0	NA	Intergenic	Intergenic	-2598	NM_000246	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
99695	chr17	50836521	50836780	+	0	NA	intron (NM_175575, intron 1 of 1)	intron (NM_175575, intron 1 of 1)	1064	NM_175575	124857		NM_175575	ENSG00000173714	WFIKKN2	GASP-1|WFDC20B|WFIKKNRP|hGASP-1	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding
20943	chr1	202227501	202228000	+	0	NA	intron (NM_021636, intron 2 of 17)	MIRb|SINE|MIR	13595	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
3988	chr1	18910671	18911080	+	0	NA	intron (NM_001136265, intron 7 of 8)	intron (NM_001136265, intron 7 of 8)	-8076	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
78346	chr15	91099871	91100930	+	0	NA	promoter-TSS (NM_001323036)	promoter-TSS (NM_001323036)	143	NM_001167580	9899		NM_014848	ENSG00000185518	SV2B	HsT19680|SLC22B2	synaptic vesicle glycoprotein 2B	protein-coding
93414	chr17	18388621	18389080	+	0	NA	intron (NM_001145127, intron 10 of 10).2	intron (NM_001145127, intron 10 of 10).2	11072	NM_001145127	645027		NM_001145127	ENSG00000214860	EVPLL	-	envoplakin like	protein-coding
57826	chr12	123231471	123231700	+	0	NA	intron (NR_103517, intron 1 of 23)	FRAM|SINE|Alu	1556	NM_022782	10198		NM_022782	ENSG00000051825	MPHOSPH9	MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding
27175	chr10	28541601	28542500	+	0	NA	intron (NM_100486, intron 3 of 12)	L2a|LINE|L2	8932	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
29344	chr10	69429121	69429780	+	0	NA	Intergenic	AluSq|SINE|Alu	-12532	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
170871	chr3	192888821	192889280	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	28806	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
114172	chr19	11376651	11376750	+	0	NA	TTS (NR_033663)	TTS (NR_033663)	2034	NM_175871	126074		NM_175871	ENSG00000173928	SWSAP1	C19orf39|SWS1AP1|ZSWIM7AP1	SWIM-type zinc finger 7 associated protein 1	protein-coding
72999	chr15	40678971	40679850	+	0	NA	Intergenic	AluYf1|SINE|Alu	15695	NR_040058	100505648		NR_040058	ENSG00000245849	RAD51-AS1	TODRA	RAD51 antisense RNA 1	ncRNA
229853	chr9	126329251	126330450	+	0	NA	intron (NM_033446, intron 1 of 9)	intron (NM_033446, intron 1 of 9)	3021	NM_001011703	89853		NM_033446	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
228776	chr9	111479951	111480700	+	0	NA	intron (NM_001364929, intron 1 of 49)	AluSx|SINE|Alu	3237	NM_001364930	23392		NM_001080398	ENSG00000136813	ECPAS	ECM29|KIAA0368	Ecm29 proteasome adaptor and scaffold	protein-coding
3862	chr1	16963171	16963750	+	0	NA	intron (NM_014675, intron 27 of 36)	L2|LINE|L2	17160	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
81730	chr16	11309921	11310380	+	0	NA	Intergenic	AluJb|SINE|Alu	-3623	NR_031678	100313773		NR_031678	ENSG00000221801	MIR548H2	MIR548H-2|MIRN548H2	microRNA 548h-2	ncRNA
153502	chr22	26490351	26490650	+	0	NA	TTS (NM_001346857)	TTS (NM_001346857)	6623	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
103143	chr17	77404401	77405260	+	0	NA	promoter-TSS (NM_001293696)	promoter-TSS (NM_001293696)	-247	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
190124	chr5	177984501	177984900	+	0	NA	Intergenic	CpG	11542	NM_006261	5626		NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
187167	chr5	140630921	140631180	+	0	NA	TTS (NM_001040021)	TTS (NM_001040021)	2125	NM_000591	929		NM_000591	ENSG00000170458	CD14	-	CD14 molecule	protein-coding
164771	chr3	69101851	69102450	+	0	NA	intron (NM_006407, intron 2 of 2)	intron (NM_006407, intron 2 of 2)	17213	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
26213	chr10	14570601	14571150	+	0	NA	intron (NM_001320736, intron 1 of 4)	intron (NM_001320736, intron 1 of 4)	1124	NM_001320736	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
185974	chr5	133147471	133147830	+	0	NA	Intergenic	Intergenic	95637	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
27416	chr10	31395521	31395800	+	0	NA	intron (NM_001323664, intron 3 of 10)	intron (NM_001323664, intron 3 of 10)	4095	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
130718	chr2	86743321	86743580	+	0	NA	intron (NM_022780, intron 2 of 8)	intron (NM_022780, intron 2 of 8)	-22328	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
78508	chr15	92934371	92934830	+	0	NA	intron (NM_001042572, intron 5 of 12)	intron (NM_001042572, intron 5 of 12)	30201	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
192995	chr6	28135451	28135850	+	0	NA	intron (NR_103455, intron 1 of 2)	L2a|LINE|L2	1666	NR_103456	100129195		NR_103455	ENSG00000269293	ZSCAN16-AS1	-	ZSCAN16 antisense RNA 1	ncRNA
115216	chr19	14490921	14491580	+	0	NA	intron (NM_202470, intron 1 of 6)	intron (NM_202470, intron 1 of 6)	4877	NM_202470	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
88933	chr16	87831371	87832380	+	0	NA	3' UTR (NM_003486, exon 10 of 10)	3' UTR (NM_003486, exon 10 of 10)	2785	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
155296	chr22	38143201	38144630	+	0	NA	intron (NM_003560, intron 3 of 16)	AluSq|SINE|Alu	-33231	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
219765	chr8	81096701	81097810	+	0	NA	intron (NM_018440, intron 1 of 8)	MER5B|DNA|hAT-Charlie	14813	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
34916	chr11	408911	409830	+	0	NA	intron (NM_021805, intron 2 of 9)	intron (NM_021805, intron 2 of 9)	5629	NM_001135054	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
49221	chr12	18951551	18951650	+	0	NA	Intergenic	Intergenic	-178133	NM_019012	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
19579	chr1	179291821	179292650	+	0	NA	Intergenic	L2a|LINE|L2	-1479	NM_001252512	6646		NM_003101	ENSG00000057252	SOAT1	ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT	sterol O-acyltransferase 1	protein-coding
66794	chr14	64710951	64711250	+	0	NA	intron (NM_001308147, intron 1 of 16)	MIR|SINE|MIR	6676	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
220020	chr8	90643471	90643830	+	0	NA	intron (NM_001008495, intron 1 of 2)	intron (NM_001008495, intron 1 of 2)	2255	NM_001146273	169200		NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
89524	chr16	89179071	89179650	+	0	NA	intron (NM_004933, intron 1 of 13)	CpG	7612	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
165657	chr3	101848751	101850100	+	0	NA	promoter-TSS (NM_031419)	promoter-TSS (NM_031419)	-89	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
156921	chr22	42293751	42294500	+	0	NA	Intergenic	Intergenic	-10198	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
191279	chr6	6518541	6519100	+	0	NA	intron (NR_026970, intron 3 of 7)	intron (NR_026970, intron 3 of 7)	-69900	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
148369	chr20	63864801	63866550	+	0	NA	promoter-TSS (NR_165312)	promoter-TSS (NR_165312)	405	NR_045090	7165		NM_003288	ENSG00000101150	TPD52L2	D54|TPD54	TPD52 like 2	protein-coding
217668	chr8	30097511	30098180	+	0	NA	intron (NM_015344, intron 1 of 3)	intron (NM_015344, intron 1 of 3)	2437	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
55516	chr12	105107171	105108530	+	0	NA	promoter-TSS (NR_121211)	promoter-TSS (NR_121211)	119	NM_015275	23325		NM_015275	ENSG00000136051	WASHC4	KIAA1033|MRT43|SWIP	WASH complex subunit 4	protein-coding
91961	chr17	7387051	7387430	+	0	NA	intron (NM_001251902, intron 9 of 12).2	intron (NM_001251902, intron 9 of 12).2	6151	NM_003985	8711		NM_003985	ENSG00000174292	TNK1	KOS1	tyrosine kinase non receptor 1	protein-coding
95969	chr17	39151051	39151920	+	0	NA	5' UTR (NM_020405, exon 1 of 14)	5' UTR (NM_020405, exon 1 of 14)	152	NM_020405	57125		NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
74651	chr15	60905601	60905880	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	224171	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
203993	chr7	1758501	1758930	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	-16405	NR_120510	101927125		NR_120508	ENSG00000236081	ELFN1-AS1	MYCLo-2	ELFN1 antisense RNA 1	ncRNA
200688	chr6	137254321	137254580	+	0	NA	Intergenic	MER11A|LTR|ERVK	-35065	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
70385	chr14	101942721	101944280	+	0	NA	Intergenic	AluSz|SINE|Alu	-21073	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
176082	chr4	82889251	82889350	+	0	NA	intron (NM_001077206, intron 1 of 25)	intron (NM_001077206, intron 1 of 25)	1853	NM_001077207	22872		NM_014933	ENSG00000138674	SEC31A	ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1	SEC31 homolog A, COPII coat complex component	protein-coding
58148	chr12	124921161	124922800	+	0	NA	Intergenic	L1MA5|LINE|L1	6433	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
97412	chr17	43397271	43397900	+	0	NA	Intergenic	Intergenic	-1408	NM_001661	379		NM_001661	ENSG00000175906	ARL4D	ARF4L	ADP ribosylation factor like GTPase 4D	protein-coding
165907	chr3	106457351	106457530	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-588039	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
52085	chr12	54058821	54059180	+	0	NA	intron (NR_026655, intron 1 of 1)	intron (NR_026655, intron 1 of 1)	746	NR_026655	440101		NR_026655	ENSG00000248265	FLJ12825	-	uncharacterized LOC440101	ncRNA
152239	chr22	20175501	20175700	+	0	NA	Intergenic	Intergenic	-24545	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
54399	chr12	89949771	89950690	+	0	NA	TTS (NR_135019)	TTS (NR_135019)	2537	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
83643	chr16	28302301	28302500	+	0	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	9875	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
182069	chr5	55969921	55970180	+	0	NA	intron (NR_157112, intron 3 of 17)	L1ME4b|LINE|L1	24913	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
1859	chr1	6392201	6394250	+	0	NA	intron (NM_007274, intron 1 of 8)	CpG	542	NM_007274	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
77321	chr15	82465571	82465980	+	0	NA	Intergenic	Intergenic	-20906	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
58841	chr12	132884621	132885250	+	0	NA	intron (NM_018223, intron 2 of 17)	AluSz|SINE|Alu	2670	NM_001161346	55743		NM_018223	ENSG00000072609	CHFR	RNF116|RNF196	checkpoint with forkhead and ring finger domains	protein-coding
238926	chrX	154740051	154740730	+	0	NA	intron (NR_104114, intron 1 of 8)	L1ME4b|LINE|L1	10687	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
146920	chr20	51619721	51620180	+	0	NA	intron (NM_006045, intron 19 of 27)	MIR|SINE|MIR	-57111	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
200415	chr6	134640751	134641260	+	0	NA	Intergenic	Intergenic	-101000	NR_125856	101928304		NR_125855	ENSG00000232310	LINC03002	-	long intergenic non-protein coding RNA 3002	ncRNA
239236	chrY	12952421	12952680	+	0	NA	Intergenic	MER66-int|LTR|ERV1	46845	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
31718	chr10	97679571	97680100	+	0	NA	exon (NM_021732, exon 2 of 3)	exon (NM_021732, exon 2 of 3)	7406	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
30016	chr10	73779951	73780550	+	0	NA	Intergenic	Intergenic	-1798	NM_203298	118487		NM_203298	ENSG00000172586	CHCHD1	C10orf34|C2360|MRP-S37|mS37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding
167462	chr3	129106871	129107030	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	14854	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
9401	chr1	47443201	47443800	+	0	NA	Intergenic	(ATTTC)n|Simple_repeat|Simple_repeat	5456	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
57447	chr12	121910021	121910280	+	0	NA	intron (NR_048555, intron 3 of 4)	AluSc|SINE|Alu	-8442	NM_144668	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
157110	chr22	42639771	42639930	+	0	NA	TTS (NM_001165877)	TTS (NM_001165877)	751	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
174846	chr4	48491871	48492030	+	0	NA	intron (NM_175619, intron 1 of 3)	intron (NM_175619, intron 1 of 3)	1698	NM_175619	326340		NM_175619	ENSG00000182223	ZAR1	Z3CXXC6	zygote arrest 1	protein-coding
117190	chr19	19365971	19366130	+	0	NA	Intergenic	AluSq2|SINE|Alu	-19793	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
148063	chr20	63271851	63273280	+	0	NA	promoter-TSS (NM_018209)	promoter-TSS (NM_018209)	-220	NM_001281483	55738		NM_018209	ENSG00000101199	ARFGAP1	ARF1GAP|HRIHFB2281	ADP ribosylation factor GTPase activating protein 1	protein-coding
217696	chr8	30128471	30129000	+	0	NA	intron (NM_001128208, intron 3 of 3)	AluJb|SINE|Alu	15930	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
205817	chr7	24587601	24588200	+	0	NA	intron (NM_001303037, intron 1 of 11)	intron (NM_001303037, intron 1 of 11)	14448	NM_001303037	51678		NM_016447	ENSG00000105926	PALS2	MPP6|VAM-1|VAM1|p55T	protein associated with LIN7 2, MAGUK p55 family member	protein-coding
135819	chr2	170361271	170361780	+	0	NA	intron (NR_045682, intron 8 of 35)	intron (NR_045682, intron 8 of 35)	-10582	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
35686	chr11	1891521	1892330	+	0	NA	3' UTR (NM_002339, exon 11 of 11)	3' UTR (NM_002339, exon 11 of 11)	-4834	NR_120534	101927624		NR_120534		LINC01150	2G7|TCONS_00019134	long intergenic non-protein coding RNA 1150	ncRNA
150235	chr21	41360001	41360750	+	0	NA	Intergenic	Intergenic	-1652	NM_002463	4600		NM_002463	ENSG00000183486	MX2	MXB	MX dynamin like GTPase 2	protein-coding
33080	chr10	110894571	110895000	+	0	NA	intron (NM_145341, intron 11 of 12)	intron (NM_145341, intron 11 of 12)	-3305	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
41093	chr11	65529471	65529630	+	0	NA	intron (NM_020680, intron 6 of 17)	MIRc|SINE|MIR	4467	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
215386	chr7	157468701	157468900	+	0	NA	intron (NR_110157, intron 1 of 3)	intron (NR_110157, intron 1 of 3)	2569	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
147111	chr20	53917201	53917400	+	0	NA	Intergenic	Intergenic	-41591	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
180065	chr5	1093401	1094000	+	0	NA	intron (NM_006598, intron 2 of 23).2	CpG-21852	18363	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
160746	chr3	32497221	32498550	+	0	NA	intron (NM_017801, intron 1 of 3)	intron (NM_017801, intron 1 of 3)	4967	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
182363	chr5	60526651	60526750	+	0	NA	TTS (NR_028509)	TTS (NR_028509)	-30414	NM_001364599	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
85327	chr16	50064771	50065030	+	0	NA	Intergenic	Intergenic	-1070	NM_001329731	55027		NM_017939	ENSG00000155393	HEATR3	DBA21|SYO1	HEAT repeat containing 3	protein-coding
224275	chr9	6182571	6182850	+	0	NA	Intergenic	L1PA3|LINE|L1	-32439	NM_001314047	90865		NM_033439	ENSG00000137033	IL33	C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV	interleukin 33	protein-coding
76934	chr15	78067971	78069240	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	9047	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
132417	chr2	105812251	105812950	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	-39247	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
202419	chr6	157892951	157893930	+	0	NA	intron (NM_016224, intron 4 of 17)	intron (NM_016224, intron 4 of 17)	70194	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
90497	chr17	1450621	1451080	+	0	NA	intron (NM_016823, intron 1 of 2)	AluSq|SINE|Alu	5382	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
9091	chr1	45013671	45013830	+	0	NA	non-coding (NR_158185, exon 5 of 10)	non-coding (NR_158185, exon 5 of 10)	1496	NR_158185	7389		NM_000374	ENSG00000126088	UROD	PCT|UPD	uroporphyrinogen decarboxylase	protein-coding
17030	chr1	156067321	156067880	+	0	NA	intron (NM_020387, intron 2 of 4)	intron (NM_020387, intron 2 of 4)	6440	NR_133653	57111		NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
82844	chr16	21509851	21510730	+	0	NA	Intergenic	Intergenic	-4155	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
219839	chr8	81831651	81831950	+	0	NA	intron (NR_145472, intron 2 of 6)	L1PA16|LINE|L1	10385	NR_145473	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
167575	chr3	129490151	129490750	+	0	NA	intron (NM_001280545, intron 17 of 30)	intron (NM_001280545, intron 17 of 30)	-38189	NM_000539	6010		NM_000539	ENSG00000163914	RHO	CSNBAD1|OPN2|RP4	rhodopsin	protein-coding
199512	chr6	118705021	118705280	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	4925	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
132591	chr2	107843771	107844080	+	0	NA	intron (NM_182588, intron 6 of 22)	intron (NM_182588, intron 6 of 22)	17033	NM_182588	285190		NM_182588	ENSG00000196862	RGPD4	RGP4	RANBP2 like and GRIP domain containing 4	protein-coding
175054	chr4	53417501	53417700	+	0	NA	intron (NR_164847, intron 9 of 15)	AluSp|SINE|Alu	39959	NM_001376783	81608		NM_030917	ENSG00000145216	FIP1L1	FIP1|Rhe|hFip1	factor interacting with PAPOLA and CPSF1	protein-coding
103392	chr17	78166221	78166780	+	0	NA	TTS (NM_001163075)	TTS (NM_001163075)	-2045	NM_001320523	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
80751	chr16	3153551	3153650	+	0	NA	Intergenic	Intergenic	9309	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
62568	chr13	99968321	99969380	+	0	NA	intron (NM_033132, intron 1 of 1)	CpG	322	NR_146225	85416		NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
116706	chr19	18443271	18444080	+	0	NA	3' UTR (NM_006532, exon 12 of 12)	3' UTR (NM_006532, exon 12 of 12)	-5542	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
11205	chr1	88851421	88852350	+	0	NA	TTS (NM_001514)	TTS (NM_001514)	39682	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
217940	chr8	38120521	38120980	+	0	NA	intron (NM_004674, intron 9 of 15)	intron (NM_004674, intron 9 of 15)	14957	NM_001105214	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
62739	chr13	106548271	106548730	+	0	NA	intron (NM_018011, intron 3 of 3)	intron (NM_018011, intron 3 of 3)	-12838	NM_001372058	1948		NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5|ephrin-B2	ephrin B2	protein-coding
114404	chr19	12636851	12637150	+	0	NA	Intergenic	AluSq2|SINE|Alu	26080	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
124451	chr19	58512501	58512900	+	0	NA	promoter-TSS (NM_012254)	promoter-TSS (NM_012254)	-635	NM_001321196	10998		NM_012254	ENSG00000083807	SLC27A5	ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2	solute carrier family 27 member 5	protein-coding
185038	chr5	115625201	115627000	+	0	NA	promoter-TSS (NM_001164468)	promoter-TSS (NM_001164468)	-64	NM_001164468	100302736		NM_001164468	ENSG00000251201	TMED7-TICAM2	MyD88-4|TICAM-2|TICAM2|TIRAP3|TIRP|TRAM	TMED7-TICAM2 readthrough	protein-coding
190999	chr6	3062571	3062730	+	0	NA	Intergenic	AluSg|SINE|Alu	-1317	NM_001317061	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
183702	chr5	80961921	80962400	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-1253	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
161544	chr3	42652571	42653200	+	0	NA	promoter-TSS (NM_145166)	promoter-TSS (NM_145166)	-812	NM_145166	92999		NM_145166	ENSG00000114853	ZBTB47	ZNF651	zinc finger and BTB domain containing 47	protein-coding
93889	chr17	21215971	21216130	+	0	NA	Intergenic	Intergenic	-1889	NM_003876	8834		NM_003876	ENSG00000178307	TMEM11	C17orf35|PM1|PMI	transmembrane protein 11	protein-coding
25547	chr10	7424321	7424580	+	0	NA	Intergenic	L2a|LINE|L2	-12964	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
155268	chr22	38050171	38050330	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-7005	NM_001039584	9463		NM_012407	ENSG00000100151	PICK1	PICK|PRKCABP	protein interacting with PRKCA 1	protein-coding
5103	chr1	24850651	24851180	+	0	NA	Intergenic	L2c|LINE|L2	68501	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
12233	chr1	100419071	100419850	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	66954	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
209660	chr7	77989971	77990130	+	0	NA	Intergenic	L1PBa1|LINE|L1	149920	NM_001127359	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
56265	chr12	112012151	112013800	+	0	NA	promoter-TSS (NM_006817)	promoter-TSS (NM_006817)	190	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
137791	chr2	199739801	199740100	+	0	NA	Intergenic	Intergenic	111223	NM_001350855	348751		NM_001350853	ENSG00000226124	FTCDNL1	FONG	formiminotransferase cyclodeaminase N-terminal like	protein-coding
80271	chr16	2233101	2233500	+	0	NA	intron (NM_004424, intron 7 of 13)	intron (NM_004424, intron 7 of 13)	-3144	NM_001374	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
120459	chr19	44666471	44666630	+	0	NA	TTS (NM_006505)	TTS (NM_006505)	-4902	NM_020219	56971		NM_020219	ENSG00000186567	CEACAM19	CEACM19|CEAL1	CEA cell adhesion molecule 19	protein-coding
109166	chr19	292471	292630	+	0	NA	Intergenic	Intergenic	-1147	NM_003712	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
226582	chr9	73009971	73010130	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-56997	NM_000689	216		NM_000689	ENSG00000165092	ALDH1A1	ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1	aldehyde dehydrogenase 1 family member A1	protein-coding
162775	chr3	49084671	49085780	+	0	NA	intron (NM_001320584, intron 1 of 9)	intron (NM_001320584, intron 1 of 9)	8407	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
170520	chr3	186540051	186540860	+	0	NA	intron (NM_017541, intron 1 of 2)	intron (NM_017541, intron 1 of 2)	3925	NM_017541	1427		NM_017541	ENSG00000213139	CRYGS	CRYG8|CTRCT20	crystallin gamma S	protein-coding
152167	chr22	20079551	20081380	+	0	NA	intron (NM_022720, intron 1 of 13)	CpG	224	NM_022720	54487		NM_022720	ENSG00000128191	DGCR8	C22orf12|DGCRK6|Gy1|pasha	DGCR8 microprocessor complex subunit	protein-coding
188819	chr5	159003151	159003650	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	94556	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
200293	chr6	132815821	132816100	+	0	NA	promoter-TSS (NR_002435)	promoter-TSS (NR_002435)	653	NR_002434	594837		NR_002434	ENSG00000206754	SNORD101	U101	small nucleolar RNA, C/D box 101	snoRNA
194991	chr6	35385771	35386130	+	0	NA	intron (NM_001171819, intron 2 of 6)	intron (NM_001171819, intron 2 of 6)	43392	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
36627	chr11	7516371	7516930	+	0	NA	intron (NM_001351855, intron 1 of 24)	MER48|LTR|ERV1	2651	NM_001351856	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
209589	chr7	77536521	77538450	+	0	NA	promoter-TSS (NM_001131009)	promoter-TSS (NM_001131009)	190	NM_002835	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
139587	chr2	224970921	224971480	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	11227	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
56290	chr12	112378221	112378300	+	0	NA	intron (NM_001109662, intron 1 of 75)	AluY|SINE|Alu	4171	NM_001109662	283450		NM_173813	ENSG00000173064	HECTD4	C12ord51|C12orf51|HEEL|NEDSSCC|POTAGE	HECT domain E3 ubiquitin protein ligase 4	protein-coding
54029	chr12	75510671	75512130	+	0	NA	intron (NM_007043, intron 1 of 9)	intron (NM_007043, intron 1 of 9)	209	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
101372	chr17	67248401	67248900	+	0	NA	intron (NR_136398, intron 1 of 3)	intron (NR_136398, intron 1 of 3)	-3454	NM_001330447	9931		NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
84469	chr16	30468471	30468900	+	0	NA	Intergenic	AluSp|SINE|Alu	-4057	NM_002209	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
191246	chr6	5877221	5877480	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	126694	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
236865	chrX	80335351	80335450	+	0	NA	promoter-TSS (NM_001170574)	promoter-TSS (NM_001170574)	-82	NR_110646	101060146		NR_110646	ENSG00000293469	CHMP1B2P	-	charged multivesicular body protein 1B2, pseudogene	pseudo
86386	chr16	66606261	66607030	+	0	NA	intron (NM_144601, intron 2 of 5)	intron (NM_144601, intron 2 of 5)	1914	NR_037619	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
137460	chr2	197039701	197039900	+	0	NA	intron (NM_001195144, intron 16 of 27)	intron (NM_001195144, intron 16 of 27)	-113093	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
181889	chr5	54527671	54527830	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	9991	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
175440	chr4	71184101	71184650	+	0	NA	Intergenic	Intergenic	-2390	NM_001134742	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
221647	chr8	125933601	125934850	+	0	NA	intron (NR_038447, intron 3 of 3)	intron (NR_038447, intron 3 of 3)	16972	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
77091	chr15	78915921	78916180	+	0	NA	Intergenic	AluJo|SINE|Alu	28996	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
85129	chr16	34590021	34590480	+	0	NA	Intergenic	Intergenic	-208770	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
81121	chr16	4383551	4384090	+	0	NA	TTS (NM_138440)	TTS (NM_138440)	11972	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
92341	chr17	8165201	8166030	+	0	NA	Intergenic	AluYm1|SINE|Alu	-2667	NM_014232	6844		NM_014232	ENSG00000220205	VAMP2	NEDHAHM|SYB2|VAMP-2	vesicle associated membrane protein 2	protein-coding
15174	chr1	149102221	149102900	+	0	NA	Intergenic	Intergenic	-20249	NM_001037675	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
192482	chr6	24949991	24950200	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-14135	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
236601	chrX	73979771	73980000	+	0	NA	intron (NR_024582, intron 2 of 4)	L1MEf|LINE|L1	35561	NR_024582	554203		NR_024582	ENSG00000225470	JPX	DCBALD06|ENOX|LINC00183|NCRNA00183	JPX transcript, XIST activator	ncRNA
32242	chr10	101837651	101837950	+	0	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	2071	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
140166	chr2	231619121	231619380	+	0	NA	Intergenic	AluSg|SINE|Alu	26386	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
205311	chr7	12207171	12207330	+	0	NA	Intergenic	Intergenic	-4044	NM_018374	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
187239	chr5	141359851	141360380	+	0	NA	promoter-TSS (NM_032096)	promoter-TSS (NM_032096)	-21	NM_032096	56103		NM_018923	ENSG00000253910	PCDHGB2	PCDH-GAMMA-B2	protocadherin gamma subfamily B, 2	protein-coding
158956	chr3	10198601	10199600	+	0	NA	intron (NM_001570, intron 2 of 12)	L2|LINE|L2	34181	NM_001570	3656		NM_001570	ENSG00000134070	IRAK2	IRAK-2	interleukin 1 receptor associated kinase 2	protein-coding
154016	chr22	30433771	30433930	+	0	NA	non-coding (NR_148046, exon 2 of 4)	non-coding (NR_148046, exon 2 of 4)	1164	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
60884	chr13	46131701	46132300	+	0	NA	intron (NM_002298, intron 14 of 15)	L1PA17|LINE|L1	-26924	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
114096	chr19	11118751	11119530	+	0	NA	intron (NM_001195800, intron 10 of 15)	AluSz6|SINE|Alu	5666	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
206564	chr7	35657621	35658130	+	0	NA	intron (NM_022373, intron 5 of 8)	AluYm1|SINE|Alu	37260	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
26335	chr10	15171171	15171400	+	0	NA	Intergenic	Intergenic	-2592	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
157069	chr22	42601901	42602300	+	0	NA	exon (NM_001278657, exon 3 of 9)	exon (NM_001278657, exon 3 of 9)	12783	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
113558	chr19	10248801	10249000	+	0	NA	Intergenic	Intergenic	-3064	NM_146387	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
236951	chrX	100939301	100939500	+	0	NA	Intergenic	Intergenic	-10483	NM_212559	402415		NM_212559	ENSG00000182489	XKRX	XKR2|XPLAC|XRG2	XK related X-linked	protein-coding
81828	chr16	11570071	11570780	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	15948	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
228749	chr9	110058401	110058630	+	0	NA	intron (NM_001198656, intron 1 of 4)	intron (NM_001198656, intron 1 of 4)	9917	NM_001198656	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
50929	chr12	49343341	49344380	+	0	NA	Intergenic	Intergenic	-3028	NM_024902	79962		NM_024902	ENSG00000178401	DNAJC22	wus	DnaJ heat shock protein family (Hsp40) member C22	protein-coding
146452	chr20	49691151	49691450	+	0	NA	intron (NM_004776, intron 1 of 8)	AluJr|SINE|Alu	22578	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
158606	chr3	4835571	4836480	+	0	NA	intron (NM_002222, intron 56 of 57)	intron (NM_002222, intron 56 of 57)	70476	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
16597	chr1	155050101	155051700	+	0	NA	promoter-TSS (NM_207197)	promoter-TSS (NM_207197)	265	NR_040772	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
40574	chr11	64357171	64357330	+	0	NA	3' UTR (NM_032251, exon 27 of 27)	3' UTR (NM_032251, exon 27 of 27)	-1912	NM_001300802	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
138038	chr2	201361171	201361480	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-3927	NM_139163	130540		NM_139163	ENSG00000155749	FLACC1	ALS2CR12	flagellum associated containing coiled-coil domains 1	protein-coding
165878	chr3	106172671	106173300	+	0	NA	Intergenic	Intergenic	-303584	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
98589	chr17	47735501	47736100	+	0	NA	intron (NM_013351, intron 1 of 5)	MIRc|SINE|MIR	2564	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
119209	chr19	39449321	39450000	+	0	NA	intron (NM_001111020, intron 2 of 29)	AluSz|SINE|Alu	4012	NM_003169	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
157363	chr22	44699951	44700250	+	0	NA	intron (NM_001198721, intron 2 of 9)	AluJr|SINE|Alu	-2098	NM_181334	553158		NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
12315	chr1	100932921	100933180	+	0	NA	intron (NM_133496, intron 8 of 10)	AluSc5|SINE|Alu	36960	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
140198	chr2	231682471	231683030	+	0	NA	Intergenic	Intergenic	-25775	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
69553	chr14	96580871	96581050	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	78095	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
225554	chr9	35859371	35859700	+	0	NA	3' UTR (NM_001042590, exon 13 of 13)	3' UTR (NM_001042590, exon 13 of 13)	10866	NM_001004487	392309		NM_001004487	ENSG00000168828	OR13J1	OR9-2	olfactory receptor family 13 subfamily J member 1	protein-coding
105000	chr17	82019771	82020380	+	0	NA	intron (NM_001330536, intron 1 of 4)	intron (NM_001330536, intron 1 of 4)	2803	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
215501	chr7	158647271	158647430	+	0	NA	intron (NM_001281932, intron 25 of 28)	MER20|DNA|hAT-Charlie	55734	NR_049893	100847032		NR_049893	ENSG00000265598	MIR5707	-	microRNA 5707	ncRNA
54197	chr12	79849701	79850080	+	0	NA	intron (NM_001143885, intron 3 of 25)	AluJr4|SINE|Alu	64021	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
73101	chr15	41022471	41022830	+	0	NA	intron (NR_104038, intron 25 of 34)	intron (NR_104038, intron 25 of 34)	69179	NM_024111	79094		NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
128623	chr2	61238971	61239450	+	0	NA	intron (NM_014709, intron 53 of 79)	Tigger1|DNA|TcMar-Tigger	61792	NR_152212	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
114068	chr19	11090001	11091200	+	0	NA	promoter-TSS (NR_163945)	promoter-TSS (NR_163945)	-941	NR_163945	115271120		NR_163945		LDLR-AS1	-	LDLR antisense RNA 1	ncRNA
104894	chr17	81888501	81889300	+	0	NA	non-coding (NR_158770, exon 4 of 7)	non-coding (NR_158770, exon 4 of 7)	-1890	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
208272	chr7	65770221	65771280	+	0	NA	promoter-TSS (NR_038378)	promoter-TSS (NR_038378)	60	NR_038378	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
222271	chr8	133292371	133292530	+	0	NA	intron (NM_001374844, intron 1 of 15)	intron (NM_001374844, intron 1 of 15)	4240	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
97635	chr17	44188971	44190030	+	0	NA	exon (NM_001353174, exon 3 of 5)	exon (NM_001353174, exon 3 of 5)	2297	NM_001353175	79089		NM_024107	ENSG00000168591	TMUB2	FP2653	transmembrane and ubiquitin like domain containing 2	protein-coding
201973	chr6	152188971	152189400	+	0	NA	intron (NM_033071, intron 127 of 145)	intron (NM_033071, intron 127 of 145)	-3807	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
230394	chr9	128105201	128105600	+	0	NA	intron (NR_049766, intron 5 of 9)	AluSx1|SINE|Alu	6918	NR_049766	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
182110	chr5	56070551	56070650	+	0	NA	Intergenic	Arthur1C|DNA|hAT-Tip100	75433	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
178147	chr4	142314801	142315280	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	-9096	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
18154	chr1	160770101	160770300	+	0	NA	Intergenic	Intergenic	-25974	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
138974	chr2	218278901	218279400	+	0	NA	TTS (NR_106768)	TTS (NR_106768)	1038	NR_106768	102465256		NR_106768	ENSG00000284173	MIR6513	hsa-mir-6513|mir-6513	microRNA 6513	ncRNA
20984	chr1	202640271	202640830	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	2903	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
209948	chr7	92633071	92633800	+	0	NA	intron (NM_001145306, intron 5 of 7)	intron (NM_001145306, intron 5 of 7)	-43045	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
73808	chr15	48810001	48812050	+	0	NA	promoter-TSS (NM_014985)	promoter-TSS (NM_014985)	44	NM_001194998	22995		NM_014985	ENSG00000103995	CEP152	MCPH4|MCPH9|SCKL5	centrosomal protein 152	protein-coding
87682	chr16	74623221	74623830	+	0	NA	3' UTR (NM_018124, exon 13 of 13)	3' UTR (NM_018124, exon 13 of 13)	-16411	NM_001145666	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
193299	chr6	30078351	30078650	+	0	NA	Intergenic	L2a|LINE|L2	-2649	NM_025236	80352		NM_025236	ENSG00000204618	RNF39	FAP216|HZF|HZFW|LIRF	ring finger protein 39	protein-coding
141705	chr2	241841571	241842000	+	0	NA	Intergenic	Intergenic	17109	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
42716	chr11	72681501	72682050	+	0	NA	Intergenic	Intergenic	-7353	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
110433	chr19	1974321	1975330	+	0	NA	intron (NM_001319, intron 2 of 11)	intron (NM_001319, intron 2 of 11)	-20276	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
109198	chr19	407271	407430	+	0	NA	exon (NM_001136263, exon 2 of 2)	exon (NM_001136263, exon 2 of 2)	1797	NM_001136263	126567		NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium dependent domain containing 4C	protein-coding
36974	chr11	11811371	11811530	+	0	NA	Intergenic	Intergenic	-28228	NR_107037	102465870		NR_107037	ENSG00000278529	MIR8070	hsa-mir-8070	microRNA 8070	ncRNA
122455	chr19	49504501	49505150	+	0	NA	Intergenic	Intergenic	-3957	NR_029703	406942		NR_029703	ENSG00000207782	MIR150	MIRN150|miRNA150|mir-150	microRNA 150	ncRNA
128724	chr2	61849921	61850180	+	0	NA	intron (NM_032180, intron 1 of 5)	L1PA16|LINE|L1	4010	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
160779	chr3	32934171	32934430	+	0	NA	Intergenic	Intergenic	-17344	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
126048	chr2	25403501	25404030	+	0	NA	intron (NM_183361, intron 14 of 17)	MIRb|SINE|MIR	-61175	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
65637	chr14	52311451	52312330	+	0	NA	Intergenic	Intergenic	-2422	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
105281	chr17	82465871	82466230	+	0	NA	intron (NM_031968, intron 3 of 11)	intron (NM_031968, intron 3 of 11)	7309	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
139806	chr2	230329121	230329580	+	0	NA	intron (NM_138402, intron 2 of 18)	HAL1b|LINE|L1	2157	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
170377	chr3	184713471	184713880	+	0	NA	intron (NR_160768, intron 1 of 4)	MIR|SINE|MIR	1432	NR_160768	107986163		NR_160768	ENSG00000272970	LOC107986163	-	uncharacterized LOC107986163	ncRNA
106737	chr18	23529271	23529630	+	0	NA	intron (NM_001276342, intron 13 of 17)	intron (NM_001276342, intron 13 of 17)	25939	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
96204	chr17	39760951	39761400	+	0	NA	3' UTR (NM_001257414, exon 5 of 5)	3' UTR (NM_001257414, exon 5 of 5)	17050	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
236739	chrX	78141351	78141850	+	0	NA	Intergenic	Intergenic	-1950	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
79945	chr16	1762551	1763330	+	0	NA	exon (NM_001040439, exon 15 of 31)	exon (NM_001040439, exon 15 of 31)	8769	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
41323	chr11	65898471	65898630	+	0	NA	intron (NM_001300855, intron 1 of 3)	MIR|SINE|MIR	1838	NM_005438	8061		NM_005438	ENSG00000175592	FOSL1	FRA|FRA1|fra-1	FOS like 1, AP-1 transcription factor subunit	protein-coding
174879	chr4	48766401	48766600	+	0	NA	intron (NM_015030, intron 1 of 63)	intron (NM_015030, intron 1 of 63)	13779	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
142813	chr20	16572821	16573880	+	0	NA	promoter-TSS (NM_001199865)	promoter-TSS (NM_001199865)	98	NM_024704	55614		NM_024704	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
145484	chr20	43913751	43913850	+	0	NA	Intergenic	Intergenic	-1052	NM_001098797	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
206105	chr7	27208501	27209080	+	0	NA	Intergenic	Intergenic	8369	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
153935	chr22	30335551	30336030	+	0	NA	intron (NM_005877, intron 13 of 15)	intron (NM_005877, intron 13 of 15)	-8849	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
134595	chr2	144320401	144321100	+	0	NA	intron (NM_001376310, intron 1 of 13)	intron (NM_001376310, intron 1 of 13)	11484	NM_001376318	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
190670	chr5	181259901	181260100	+	0	NA	intron (NM_032765, intron 1 of 1)	intron (NM_032765, intron 1 of 1)	1143	NM_001346048	84851		NM_032765	ENSG00000183718	TRIM52	RNF102	tripartite motif containing 52	protein-coding
24084	chr1	235327791	235329450	+	0	NA	promoter-TSS (NM_031371)	promoter-TSS (NM_031371)	50	NM_004837	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
41475	chr11	66144901	66145300	+	0	NA	intron (NM_018026, intron 1 of 23)	L1M4a2|LINE|L1	74828	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
1389	chr1	2539301	2539930	+	0	NA	Intergenic	MIRc|SINE|MIR	-9352	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
53541	chr12	67320801	67321200	+	0	NA	Intergenic	LTR39|LTR|ERV1	51642	NM_001329676	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
85097	chr16	33339371	33339740	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-9214	NR_158162	105369266		NR_158162		LOC105369266	-	uncharacterized LOC105369266	ncRNA
144803	chr20	36684751	36685050	+	0	NA	intron (NR_038370, intron 3 of 13)	intron (NR_038370, intron 3 of 13)	-38704	NM_032214	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
121058	chr19	45862351	45863600	+	0	NA	intron (NM_004819, intron 1 of 26)	CpG	172	NM_004819	8189		NM_004819	ENSG00000125755	SYMPK	Pta1|SPK|SYM	symplekin scaffold protein	protein-coding
53030	chr12	57602651	57602750	+	0	NA	3' UTR (NM_024779, exon 10 of 10)	3' UTR (NM_024779, exon 10 of 10)	-2124	NM_001286245	196403		NM_178502	ENSG00000178498	DTX3	RNF154|deltex3	deltex E3 ubiquitin ligase 3	protein-coding
135580	chr2	165951051	165951230	+	0	NA	intron (NM_024753, intron 1 of 28)	intron (NM_024753, intron 1 of 28)	2636	NM_024753	79809		NM_024753	ENSG00000123607	TTC21B	ATD4|CFAP60|FAP60|FLA17|IFT139|IFT139B|JBTS11|NPHP12|Nbla10696|SRTD4|THM1	tetratricopeptide repeat domain 21B	protein-coding
118977	chr19	38874001	38874200	+	0	NA	intron (NM_001195833, intron 3 of 11)	MLT1K|LTR|ERVL-MaLR	4175	NM_198445	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
224524	chr9	19161221	19162300	+	0	NA	Intergenic	Intergenic	-34154	NR_038064	123		NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
96864	chr17	42047601	42048000	+	0	NA	intron (NM_001358661, intron 1 of 2)	AluSx3|SINE|Alu	2801	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
111338	chr19	3645521	3645780	+	0	NA	intron (NM_001300849, intron 11 of 16)	intron (NM_001300849, intron 11 of 16)	-18835	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
179447	chr4	184416021	184416300	+	0	NA	intron (NM_002199, intron 5 of 8)	AluJr|SINE|Alu	-33854	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
210397	chr7	99944051	99944350	+	0	NA	Intergenic	LTR9D|LTR|ERV1	-14580	NM_181538	349149		NM_181538	ENSG00000176402	GJC3	CX29|CX30.2|CX31.3|GJE1	gap junction protein gamma 3	protein-coding
15222	chr1	149489651	149490000	+	0	NA	intron (NM_001351365, intron 11 of 92)	intron (NM_001351365, intron 11 of 92)	13927	NM_001351365	101060226		NM_001351365	ENSG00000271383	NBPF19	-	NBPF member 19	protein-coding
222344	chr8	133545971	133546130	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	25837	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
12488	chr1	107949871	107950030	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-14493	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
214899	chr7	151436751	151437050	+	0	NA	intron (NM_144727, intron 2 of 3)	intron (NM_144727, intron 2 of 3)	3241	NM_144727	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
124988	chr2	9400151	9400450	+	0	NA	intron (NM_001135191, intron 24 of 26)	intron (NM_001135191, intron 24 of 26)	22291	NR_134951	9270		NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin subunit beta 1 binding protein 1	protein-coding
198843	chr6	109361771	109362100	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	19804	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
26153	chr10	14016121	14016380	+	0	NA	intron (NM_018027, intron 2 of 24)	intron (NM_018027, intron 2 of 24)	-7700	NM_001318336	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
205667	chr7	22994871	22995250	+	0	NA	intron (NM_001363466, intron 1 of 11)	L2|LINE|L2	19070	NM_032581	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
238795	chrX	154384821	154385650	+	0	NA	Intergenic	Intergenic	5940	NM_000117	2010		NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
177649	chr4	121226151	121226800	+	0	NA	intron (NM_001244764, intron 1 of 12)	intron (NM_001244764, intron 1 of 12)	1008	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
31669	chr10	97427721	97428200	+	0	NA	intron (NM_001317079, intron 1 of 3)	intron (NM_001317079, intron 1 of 3)	283	NM_001317079	5223		NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
135669	chr2	168489851	168491830	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	34568	NM_001256126	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
35661	chr11	1864901	1866030	+	0	NA	intron (NM_001242932, intron 1 of 11)	intron (NM_001242932, intron 1 of 11)	300	NM_001242932	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
187494	chr5	142235051	142235380	+	0	NA	Intergenic	Intergenic	83107	NR_131221	100642175		NR_131221		SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
55636	chr12	107092601	107093000	+	0	NA	intron (NM_004075, intron 1 of 12)	intron (NM_004075, intron 1 of 12)	749	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
2975	chr1	11972951	11973250	+	0	NA	intron (NM_001316320, intron 19 of 19)	intron (NM_001316320, intron 19 of 19)	-7081	NM_001127660	9927		NM_014874	ENSG00000116688	MFN2	CMT2A|CMT2A2|CMT2A2A|CMT2A2B|CPRP1|HMSN6A|HSG|MARF|MSL	mitofusin 2	protein-coding
70850	chr14	103701721	103703680	+	0	NA	intron (NM_001371232, intron 7 of 9)	intron (NM_001371232, intron 7 of 9)	12751	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
120325	chr19	43528471	43528830	+	0	NA	Intergenic	Intergenic	-1449	NM_001320869	23474		NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1 persulfide dioxygenase	protein-coding
234268	chrX	13360351	13360450	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	25159	NR_045260	100133123		NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA
61882	chr13	77305451	77305750	+	0	NA	intron (NM_015057, intron 1 of 82)	L1MB7|LINE|L1	21494	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
184100	chr5	93716601	93716800	+	0	NA	intron (NR_028080, intron 8 of 8)	(A)n|Simple_repeat|Simple_repeat	24900	NM_153216	134187		NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
13447	chr1	114475621	114476450	+	0	NA	intron (NM_033020, intron 1 of 18)	intron (NM_033020, intron 1 of 18)	35168	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
3108	chr1	12229001	12229200	+	0	NA	promoter-TSS (NM_015378)	promoter-TSS (NM_015378)	-930	NM_015378	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
122023	chr19	48616201	48617400	+	0	NA	exon (NM_000979, exon 4 of 7)	exon (NM_000979, exon 4 of 7)	-1724	NM_017708	54854		NM_017708	ENSG00000105523	FAM83E	-	family with sequence similarity 83 member E	protein-coding
97134	chr17	42548201	42549230	+	0	NA	Intergenic	CpG	-4208	NR_144397	3292		NM_000413	ENSG00000108786	HSD17B1	17-beta-HSD|20-alpha-HSD|E2DH|EDH17B2|EDHB17|HSD17|SDR28C1	hydroxysteroid 17-beta dehydrogenase 1	protein-coding
79815	chr16	1415721	1416380	+	0	NA	Intergenic	Intergenic	-1346	NM_001037125	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
41572	chr11	66333121	66333500	+	0	NA	exon (NM_001363559, exon 9 of 10)	exon (NM_001363559, exon 9 of 10)	3124	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
147105	chr20	53888351	53888800	+	0	NA	Intergenic	L1MB4|LINE|L1	-12866	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
42176	chr11	67888121	67888500	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-82974	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
64196	chr14	23013351	23013650	+	0	NA	Intergenic	Intergenic	-3357	NM_001282968	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
192726	chr6	26363671	26365850	+	0	NA	promoter-TSS (NM_001197247)	promoter-TSS (NM_001197247)	-399	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
18655	chr1	166977351	166977450	+	0	NA	intron (NM_001286378, intron 1 of 12)	intron (NM_001286378, intron 1 of 12)	1818	NM_001286378	84944		NM_032858	ENSG00000143194	MAEL	CT128|SPATA35	maelstrom spermatogenic transposon silencer	protein-coding
47180	chr12	793721	794230	+	0	NA	intron (NM_018979, intron 1 of 27)	L1MB8|LINE|L1	41052	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
7804	chr1	36257121	36257580	+	0	NA	intron (NM_001321471, intron 2 of 12)	L2a|LINE|L2	32907	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
167224	chr3	128466371	128466530	+	0	NA	intron (NM_153330, intron 1 of 2)	intron (NM_153330, intron 1 of 2)	798	NM_153330	165721		NM_153330	ENSG00000179407	DNAJB8	CT156|DJ6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding
158852	chr3	9818551	9819050	+	0	NA	non-coding (NR_037162, exon 6 of 11)	non-coding (NR_037162, exon 6 of 11)	8538	NR_037162	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
73268	chr15	41838651	41839150	+	0	NA	promoter-TSS (NM_001114633)	promoter-TSS (NM_001114633)	87	NM_001114633	100137049		NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2 group IVB	protein-coding
101695	chr17	68459081	68459500	+	0	NA	intron (NM_001278433, intron 1 of 10)	intron (NM_001278433, intron 1 of 10)	-1766	NR_135470	55062		NM_017983	ENSG00000070540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
239303	chrY	15441901	15442100	+	0	NA	Intergenic	Intergenic	-637967	NR_046504	100874056		NR_046504	ENSG00000228787	NLGN4Y-AS1	NLGN4Y-AS|NLGN4YAS	NLGN4Y antisense RNA 1	ncRNA
108498	chr18	74040721	74041230	+	0	NA	Intergenic	Intergenic	106859	NM_152676	201456		NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
15675	chr1	150934421	150934680	+	0	NA	intron (NM_012432, intron 3 of 21)	L1M4a1|LINE|L1	8187	NM_012432	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
122329	chr19	49148821	49149800	+	0	NA	exon (NM_003660, exon 27 of 30)	exon (NM_003660, exon 27 of 30)	6086	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
150287	chr21	41925751	41927080	+	0	NA	intron (NM_015500, intron 2 of 13)	intron (NM_015500, intron 2 of 13)	288	NM_199050	25966		NM_015500	ENSG00000157617	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium dependent domain containing 2	protein-coding
234296	chrX	13691851	13692800	+	0	NA	intron (NM_001195328, intron 1 of 1)	AluJo|SINE|Alu	3197	NM_004251	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
15714	chr1	151020301	151020500	+	0	NA	intron (NM_001303243, intron 3 of 5)	AluJr|SINE|Alu	11951	NR_130135	58497		NM_021222	ENSG00000143363	PRUNE1	DRES-17|DRES17|H-PRUNE|HTCD37|NMIHBA|PRUNE	prune exopolyphosphatase 1	protein-coding
119584	chr19	40694221	40694530	+	0	NA	intron (NM_001142555, intron 12 of 13)	intron (NM_001142555, intron 12 of 13)	-3724	NM_001289979	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
67628	chr14	72963371	72963930	+	0	NA	Intergenic	AluSz|SINE|Alu	23306	NM_178441	53349		NM_021260	ENSG00000165861	ZFYVE1	DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1	zinc finger FYVE-type containing 1	protein-coding
94788	chr17	31052171	31052730	+	0	NA	intron (NR_146737, intron 2 of 6)	L3|LINE|CR1	6659	NR_146737	646030		NR_146737		LOC646030	LRRC37	leucine rich repeat containing 37B pseudogene	pseudo
231941	chr9	133127351	133128230	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	1611	NM_001271775	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
109007	chr18	79707001	79707730	+	0	NA	intron (NM_001318511, intron 5 of 11)	intron (NM_001318511, intron 5 of 11)	25935	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
239009	chrY	2856921	2857600	+	0	NA	intron (NM_001008, intron 5 of 6)	L1MB2|LINE|L1	15658	NM_001008	6192		NM_001008	ENSG00000129824	RPS4Y1	RPS4Y|S4	ribosomal protein S4 Y-linked 1	protein-coding
95463	chr17	36185701	36185930	+	0	NA	Intergenic	Intergenic	-9191	NM_001001417	414059		NM_001001417	ENSG00000274808	TBC1D3B	PRC17|TBC1D3I|TBC1D3L	TBC1 domain family member 3B	protein-coding
218238	chr8	42120501	42120700	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-32346	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
141442	chr2	241029851	241030150	+	0	NA	intron (NM_001080437, intron 1 of 31)	intron (NM_001080437, intron 1 of 31)	31382	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
21982	chr1	209675921	209676180	+	0	NA	promoter-TSS (NR_134511)	promoter-TSS (NR_134511)	638	NM_015714	50486		NM_015714	ENSG00000123689	G0S2	-	G0/G1 switch 2	protein-coding
219928	chr8	86472021	86473330	+	0	NA	3' UTR (NM_001286719, exon 9 of 9)	3' UTR (NM_001286719, exon 9 of 9)	36011	NM_016033	51115		NM_016033	ENSG00000176623	RMDN1	CGI-90|FAM82B|RMD-1|RMD1	regulator of microtubule dynamics 1	protein-coding
113770	chr19	10523101	10524180	+	0	NA	Intergenic	Intergenic	-5675	NM_001166215	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
124549	chr2	400351	400650	+	0	NA	Intergenic	Intergenic	84216	NR_146953	105373350		NR_146953		LINC01865	-	long intergenic non-protein coding RNA 1865	ncRNA
132638	chr2	108690001	108690250	+	0	NA	Intergenic	L1MD2|LINE|L1	-11524	NR_149074	106182118		NR_149074	ENSG00000228763	LIMS1-AS1	-	LIMS1 antisense RNA 1	ncRNA
108466	chr18	70620451	70620950	+	0	NA	Intergenic	LTR49|LTR|ERV1	30254	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
64358	chr14	24095321	24096080	+	0	NA	promoter-TSS (NM_001354769)	promoter-TSS (NM_001354769)	-570	NM_001354769	4901		NM_006177	ENSG00000129535	NRL	D14S46E|NRL-MAF|RP27	neural retina leucine zipper	protein-coding
152006	chr22	19260751	19261050	+	0	NA	intron (NM_001835, intron 2 of 31)	Tigger1|DNA|TcMar-Tigger	30819	NM_007098	8218		NM_001835	ENSG00000070371	CLTCL1	CHC22|CLH22|CLTCL|CLTD	clathrin heavy chain like 1	protein-coding
200401	chr6	134436051	134436700	+	0	NA	intron (NR_125852, intron 4 of 4)	intron (NR_125852, intron 4 of 4)	-1341	NR_038216	154092		NR_038216	ENSG00000236700	LINC01010	-	long intergenic non-protein coding RNA 1010	ncRNA
88439	chr16	84810851	84811150	+	0	NA	Intergenic	Intergenic	-8985	NM_031476	83716		NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2|LGL1	cysteine rich secretory protein LCCL domain containing 2	protein-coding
209204	chr7	75429071	75429230	+	0	NA	intron (NM_001099415, intron 7 of 14)	L1ME3A|LINE|L1	18828	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
116680	chr19	18410251	18411350	+	0	NA	Intergenic	Intergenic	-8598	NM_001009998	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
94123	chr17	28223971	28224530	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-2313	NR_003064	23615		NM_021093	ENSG00000290671	PYY2	-	peptide YY 2 (pseudogene)	pseudo
56491	chr12	116256821	116257480	+	0	NA	intron (NM_015335, intron 1 of 30)	intron (NM_015335, intron 1 of 30)	20543	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
32035	chr10	101029301	101029950	+	0	NA	intron (NM_024895, intron 2 of 9)	intron (NM_024895, intron 2 of 9)	1504	NM_001195263	79955		NM_024895	ENSG00000186862	PDZD7	DFNB57|PDZK7	PDZ domain containing 7	protein-coding
216186	chr8	11818221	11818480	+	0	NA	intron (NM_004462, intron 3 of 7)	L1PA6|LINE|L1	9206	NM_001287751	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
56805	chr12	120211421	120212480	+	0	NA	3' UTR (NM_001243756, exon 11 of 11)	3' UTR (NM_001243756, exon 11 of 11)	10659	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
31003	chr10	88389101	88389830	+	0	NA	intron (NM_018363, intron 4 of 6)	MamGypsy2-I|LTR|Gypsy	193853	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
139652	chr2	226797951	226799000	+	0	NA	exon (NM_005544, exon 1 of 2)	exon (NM_005544, exon 1 of 2)	1345	NM_005544	3667		NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
71138	chr14	104981151	104981680	+	0	NA	Intergenic	Intergenic	-3041	NM_138420	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
131191	chr2	95023101	95024150	+	0	NA	Intergenic	Intergenic	-2030	NM_022440	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
193434	chr6	30478021	30478480	+	0	NA	Intergenic	L1PB1|LINE|L1	-11259	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
226907	chr9	79544351	79544930	+	0	NA	Intergenic	L1PA4|LINE|L1	-27133	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
142286	chr20	3235051	3235350	+	0	NA	intron (NM_001174090, intron 2 of 19)	intron (NM_001174090, intron 2 of 19)	2527	NM_032034	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
147564	chr20	60211021	60211300	+	0	NA	intron (NR_046099, intron 3 of 4)	(TG)n|Simple_repeat|Simple_repeat	72668	NR_046099	284757		NM_001004305	ENSG00000228340	MIR646HG	-	MIR646 host gene	ncRNA
217818	chr8	37153271	37153430	+	0	NA	Intergenic	Intergenic	340563	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
91986	chr17	7429171	7429330	+	0	NA	intron (NM_001364672, intron 2 of 2)	intron (NM_001364672, intron 2 of 2)	393	NM_001364708	107983988		NM_001364672	ENSG00000283439	SPEM3	-	SPEM family member 3	protein-coding
21791	chr1	206981971	206982380	+	0	NA	Intergenic	Intergenic	-11550	NM_032029	83953		NM_032029	ENSG00000162897	FCAMR	CD351|FCA/MR|FKSG87|Fcalpha/muR	Fc alpha and mu receptor	protein-coding
140007	chr2	230976751	230977350	+	0	NA	Intergenic	LTR48B|LTR|ERV1	18982	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
25799	chr10	11181801	11182380	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	17060	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
72493	chr15	32662601	32662850	+	0	NA	intron (NM_001144757, intron 2 of 5).3	intron (NM_001144757, intron 2 of 5).3	10340	NR_135505	105370757		NR_135505	ENSG00000241818	SCG5-AS1	-	SCG5 antisense RNA 1	ncRNA
116569	chr19	18237621	18238450	+	0	NA	intron (NM_000923, intron 1 of 15)	AluJb|SINE|Alu	-3656	NM_001330172	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
33559	chr10	119317221	119317480	+	0	NA	intron (NM_005308, intron 1 of 15)	(GT)n|Simple_repeat|Simple_repeat	-60622	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
207452	chr7	44578271	44578750	+	0	NA	3' UTR (NM_182547, exon 5 of 5)	3' UTR (NM_182547, exon 5 of 5)	3721	NM_001303062	222068		NM_182547	ENSG00000158604	TMED4	ERS25|GMP25iso|HNLF|p24a3|p24alpha3	transmembrane p24 trafficking protein 4	protein-coding
8373	chr1	40363771	40364030	+	0	NA	Intergenic	L1M1|LINE|L1	-9827	NM_022733	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
80470	chr16	2697521	2697780	+	0	NA	intron (NM_018992, intron 2 of 5)	intron (NM_018992, intron 2 of 5)	15127	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
139902	chr2	230718551	230718850	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	5152	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
105533	chr17	83127251	83128130	+	0	NA	Intergenic	Intergenic	46544	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
196256	chr6	42911751	42911930	+	0	NA	Intergenic	CpG	-4149	NM_001243169	171558		NM_138296	ENSG00000171611	PTCRA	PT-ALPHA|PTA	pre T cell antigen receptor alpha	protein-coding
71831	chr15	22180721	22180980	+	0	NA	Intergenic	Intergenic	-2254	NR_135666	646370		NR_135666		IGHV1OR15-3	IGHV1OR153	immunoglobulin heavy variable 1/OR15-3 (pseudogene)	pseudo
75839	chr15	69465821	69466400	+	0	NA	Intergenic	Intergenic	13292	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
162144	chr3	46960871	46961330	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	15401	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
226657	chr9	74951571	74953800	+	0	NA	promoter-TSS (NR_121183)	promoter-TSS (NR_121183)	227	NM_017998	55071		NM_017998	ENSG00000135045	C9orf40	-	chromosome 9 open reading frame 40	protein-coding
115883	chr19	16575371	16576200	+	0	NA	3' UTR (NM_004831, exon 3 of 3)	3' UTR (NM_004831, exon 3 of 3)	-3370	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
152494	chr22	20922951	20923580	+	0	NA	intron (NR_156180, intron 1 of 3)	intron (NR_156180, intron 1 of 3)	5858	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
99002	chr17	48753651	48753750	+	0	NA	Intergenic	MIRb|SINE|MIR	-24950	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
112414	chr19	6212671	6213330	+	0	NA	3' UTR (NM_005934, exon 12 of 12)	3' UTR (NM_005934, exon 12 of 12)	66975	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
139535	chr2	224584371	224586300	+	0	NA	promoter-TSS (NM_001257197)	promoter-TSS (NM_001257197)	28	NM_003590	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
102290	chr17	75325971	75326350	+	0	NA	intron (NM_002086, intron 3 of 5)	intron (NM_002086, intron 3 of 5)	-36711	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
142764	chr20	10553471	10553630	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	96145	NR_106930	102465525		NR_106930	ENSG00000273745	MIR6870	hsa-mir-6870	microRNA 6870	ncRNA
118808	chr19	38506471	38507900	+	0	NA	intron (NM_000540, intron 57 of 105)	intron (NM_000540, intron 57 of 105)	73494	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
40735	chr11	64822821	64823080	+	0	NA	TTS (NM_017525)	TTS (NM_017525)	-11656	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
11890	chr1	93173721	93174330	+	0	NA	intron (NR_030761, intron 1 of 4)	AluSx3|SINE|Alu	6388	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
151567	chr21	46588221	46588480	+	0	NA	Intergenic	L1PB1|LINE|L1	16732	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
46163	chr11	123070431	123071700	+	0	NA	3' UTR (NM_024769, exon 7 of 7)	3' UTR (NM_024769, exon 7 of 7)	-8929	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
133171	chr2	112776371	112777130	+	0	NA	intron (NM_001371554, intron 6 of 6)	intron (NM_001371554, intron 6 of 6)	7650	NM_001371554	3552		NM_000575	ENSG00000115008	IL1A	IL-1 alpha|IL-1A|IL1|IL1-ALPHA|IL1F1	interleukin 1 alpha	protein-coding
140834	chr2	236620071	236620230	+	0	NA	Intergenic	Intergenic	50325	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
18722	chr1	167461671	167461900	+	0	NA	intron (NM_198053, intron 1 of 7)	AluSx4|SINE|Alu	56744	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
206111	chr7	27220351	27220780	+	0	NA	Intergenic	CpG	20144	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
11865	chr1	93062101	93062500	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-16935	NM_001164393	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
166554	chr3	115562751	115562850	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-60710	NM_002045	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
10336	chr1	64913121	64913380	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	53299	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
4976	chr1	24190201	24191000	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-3311	NM_170743	163702		NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	interferon lambda receptor 1	protein-coding
104138	chr17	80379651	80379950	+	0	NA	intron (NM_001256071, intron 55 of 67)	intron (NM_001256071, intron 55 of 67)	-35367	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
113123	chr19	8306151	8306730	+	0	NA	intron (NM_016579, intron 1 of 4)	intron (NM_016579, intron 1 of 4)	1918	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
5789	chr1	26540401	26540830	+	0	NA	intron (NM_002953, intron 2 of 21)	AluJb|SINE|Alu	-2497	NM_001330441	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
17541	chr1	156794671	156795230	+	0	NA	intron (NM_005973, intron 5 of 6)	intron (NM_005973, intron 5 of 6)	-20800	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
98050	chr17	45440821	45441380	+	0	NA	intron (NM_014798, intron 9 of 11).3	intron (NM_014798, intron 9 of 11).3	-8230	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
23225	chr1	227734701	227736350	+	0	NA	promoter-TSS (NM_001161465)	promoter-TSS (NM_001161465)	90	NR_136657	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
174024	chr4	26724521	26724880	+	0	NA	intron (NM_001292054, intron 12 of 17)	L1M4|LINE|L1	135544	NR_134675	105374546		NR_134673		STIM2-AS1	-	STIM2 antisense RNA 1	ncRNA
151710	chr22	17626801	17627480	+	0	NA	intron (NM_001696, intron 1 of 8)	AluSx3|SINE|Alu	1609	NM_001696	529		NM_001696	ENSG00000131100	ATP6V1E1	ARCL2C|ATP6E|ATP6E2|ATP6V1E|P31|Vma4	ATPase H+ transporting V1 subunit E1	protein-coding
111790	chr19	4445751	4446380	+	0	NA	promoter-TSS (NR_039901)	promoter-TSS (NR_039901)	87	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
29006	chr10	63463071	63463230	+	0	NA	intron (NM_001322258, intron 1 of 24)	intron (NM_001322258, intron 1 of 24)	-2079	NR_027182	84989		NM_032903	ENSG00000272767	JMJD1C-AS1	-	JMJD1C antisense RNA 1	ncRNA
169900	chr3	177640371	177640830	+	0	NA	intron (NR_047568, intron 3 of 3)	L1PB1|LINE|L1	-176265	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
215515	chr7	158707501	158708080	+	0	NA	Intergenic	LTR2752|LTR|ERV1	-2986	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
204409	chr7	3089321	3089880	+	0	NA	Intergenic	Intergenic	-45733	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
134407	chr2	141455951	141456050	+	0	NA	intron (NM_018557, intron 3 of 90)	LTR33A_|LTR|ERVL	675016	NM_018557	53353		NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding
238822	chrX	154433621	154433880	+	0	NA	intron (NM_001183, intron 6 of 9)	intron (NM_001183, intron 6 of 9)	-3404	NM_001493	2664		NM_001493	ENSG00000203879	GDI1	1A|GDIL|MRX41|MRX48|OPHN2|RABGD1A|RABGDIA|XAP-4|XLID41	GDP dissociation inhibitor 1	protein-coding
199759	chr6	125830571	125830930	+	0	NA	intron (NM_001199621, intron 2 of 14)	(TG)n|Simple_repeat|Simple_repeat	-11892	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
148781	chr21	8215501	8216200	+	0	NA	non-coding (NR_146144, exon 1 of 1)	non-coding (NR_146144, exon 1 of 1)	1962	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
177676	chr4	121776421	121777200	+	0	NA	Intergenic	Intergenic	-11410	NR_169194	132332		NM_152399	ENSG00000164112	SMIM43	NEMEP|TMEM155	small integral membrane protein 43	protein-coding
69314	chr14	93181151	93181650	+	0	NA	TTS (NM_022151)	TTS (NM_022151)	3497	NM_022151	64112		NM_022151	ENSG00000165943	MOAP1	MAP-1|PNMA4	modulator of apoptosis 1	protein-coding
142663	chr20	5865001	5865400	+	0	NA	TTS (NM_001303478)	TTS (NM_001303478)	-46310	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
120541	chr19	44913221	44913680	+	0	NA	promoter-TSS (NM_001321066)	promoter-TSS (NM_001321066)	-875	NM_001321065	341		NM_001645	ENSG00000130208	APOC1	Apo-CI|ApoC-I|apo-CIB|apoC-IB	apolipoprotein C1	protein-coding
189218	chr5	171449851	171450150	+	0	NA	intron (NM_003862, intron 4 of 4)	intron (NM_003862, intron 4 of 4)	30353	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
80609	chr16	2959021	2960130	+	0	NA	Intergenic	Intergenic	-4700	NM_001253726	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
158780	chr3	9422601	9423380	+	0	NA	intron (NM_001349451, intron 1 of 25)	intron (NM_001349451, intron 1 of 25)	25375	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
16749	chr1	155307051	155307530	+	0	NA	Intergenic	L1MB3|LINE|L1	-1458	NM_001242825	2224		NM_002004	ENSG00000160752	FDPS	FPPS|FPS|POROK9	farnesyl diphosphate synthase	protein-coding
169650	chr3	171457051	171457150	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	3305	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
109834	chr19	1191221	1191480	+	0	NA	Intergenic	L1M4|LINE|L1	-14428	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
82914	chr16	21708371	21709230	+	0	NA	intron (NM_144672, intron 12 of 28).2	intron (NM_144672, intron 12 of 28).2	3837	NM_170664	146183		NM_144672	ENSG00000155719	OTOA	CT108|DFNB22	otoancorin	protein-coding
47833	chr12	6599821	6600950	+	0	NA	exon (NM_001297553, exon 8 of 39)	exon (NM_001297553, exon 8 of 39)	6066	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
38859	chr11	47337351	47337980	+	0	NA	intron (NM_000256, intron 23 of 33)	intron (NM_000256, intron 23 of 33)	15037	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
125421	chr2	11760371	11760530	+	0	NA	intron (NM_001349204, intron 2 of 21)	SVA_A|Retroposon|SVA	-6994	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
9084	chr1	45001201	45001600	+	0	NA	Intergenic	Intergenic	9924	NM_024602	79654		NM_024602	ENSG00000126107	HECTD3	-	HECT domain E3 ubiquitin protein ligase 3	protein-coding
67446	chr14	70713951	70714380	+	0	NA	Intergenic	Intergenic	15467	NR_125769	103695436		NR_125769	ENSG00000258689	LINC01269	HNSCAT1|PARLncRNA-1	long intergenic non-protein coding RNA 1269	ncRNA
66243	chr14	61346151	61346780	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	25022	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
141711	chr2	241849271	241849430	+	0	NA	TTS (NM_005018)	TTS (NM_005018)	9544	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
76047	chr15	72271171	72271330	+	0	NA	non-coding (NR_136603, exon 2 of 23)	non-coding (NR_136603, exon 2 of 23)	1304	NM_001323530	56965		NM_020213	ENSG00000137817	PARP6	ARTD17|PARP-6-B1|PARP-6-C|pART17	poly(ADP-ribose) polymerase family member 6	protein-coding
111461	chr19	3880551	3881250	+	0	NA	5' UTR (NM_033064, exon 1 of 13)	5' UTR (NM_033064, exon 1 of 13)	215	NM_033064	85300		NM_033064	ENSG00000167654	ATCAY	BNIP-H|CLAC	ATCAY kinesin light chain interacting caytaxin	protein-coding
35879	chr11	2395551	2395650	+	0	NA	intron (NM_004356, intron 5 of 7)	intron (NM_004356, intron 5 of 7)	-5150	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
31871	chr10	100175701	100176180	+	0	NA	intron (NM_006459, intron 5 of 10)	intron (NM_006459, intron 5 of 10)	10089	NM_001100626	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
236615	chrX	74421321	74422030	+	0	NA	exon (NM_006517, exon 1 of 6)	exon (NM_006517, exon 1 of 6)	182	NM_006517	6567		NM_006517	ENSG00000147100	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16 member 2	protein-coding
78192	chr15	90566401	90567080	+	0	NA	intron (NM_001042574, intron 2 of 14)	AluSx1|SINE|Alu	36817	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
34846	chr11	317871	319900	+	0	NA	TTS (NM_021034)	TTS (NM_021034)	1975	NR_049759	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
86361	chr16	66546321	66546580	+	0	NA	intron (NM_001271935, intron 2 of 7)	intron (NM_001271935, intron 2 of 7)	3672	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
50375	chr12	47220401	47221080	+	0	NA	intron (NM_138371, intron 3 of 3)	L2b|LINE|L2	-4297	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
188580	chr5	157153521	157153930	+	0	NA	Intergenic	L1MDa|LINE|L1	-10860	NM_004270	9443		NM_004270	ENSG00000155868	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
37310	chr11	14763301	14763500	+	0	NA	intron (NM_001363569, intron 1 of 15)	L2-3_Crp|LINE|L2	119596	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
103675	chr17	78793071	78793230	+	0	NA	intron (NM_001385179, intron 20 of 20)	intron (NM_001385179, intron 20 of 20)	-10808	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
205305	chr7	12067371	12067780	+	0	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-143719	NM_018374	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
187006	chr5	139751171	139751330	+	0	NA	Intergenic	Intergenic	-5027	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
50423	chr12	47407871	47408780	+	0	NA	Intergenic	MIR|SINE|MIR	-6683	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
80063	chr16	1979101	1980100	+	0	NA	3' UTR (NM_006453, exon 22 of 22)	3' UTR (NM_006453, exon 22 of 22)	1869	NM_172168	124056		NM_144603	ENSG00000196408	NOXO1	P41NOX|P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28	NADPH oxidase organizer 1	protein-coding
23672	chr1	231339451	231340150	+	0	NA	exon (NM_001261462, exon 2 of 3)	exon (NM_001261462, exon 2 of 3)	1507	NM_032018	83932		NM_032018	ENSG00000010072	SPRTN	C1orf124|DVC1|PRO4323|spartan	SprT-like N-terminal domain	protein-coding
119036	chr19	38948851	38948950	+	0	NA	intron (NM_148169, intron 2 of 5).2	intron (NM_148169, intron 2 of 5).2	3787	NM_148169	115290		NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
18214	chr1	160993651	160993980	+	0	NA	Intergenic	Intergenic	27337	NM_001348091	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
188669	chr5	157259721	157260180	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-6173	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
65517	chr14	51903271	51903430	+	0	NA	intron (NM_053064, intron 2 of 3)	Tigger17a|DNA|TcMar-Tigger	15221	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
195762	chr6	40413101	40413500	+	0	NA	intron (NM_020737, intron 2 of 2)	intron (NM_020737, intron 2 of 2)	34963	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
181510	chr5	43028651	43029330	+	0	NA	intron (NR_104651, intron 2 of 2)	intron (NR_104651, intron 2 of 2)	-9347	NR_104650	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
31178	chr10	91187051	91187350	+	0	NA	intron (NM_001257101, intron 1 of 9)	MER5B|DNA|hAT-Charlie	24188	NM_001257101	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
236488	chrX	71664251	71664500	+	0	NA	intron (NR_136576, intron 2 of 5)	intron (NR_136576, intron 2 of 5)	2493	NR_136576	100129291		NR_136576	ENSG00000237265	LOC100129291	-	chromosome X open reading frame 49 pseudogene	pseudo
209810	chr7	87909971	87910530	+	0	NA	TTS (NM_006716)	TTS (NM_006716)	-23893	NM_004194	53616		NM_004194	ENSG00000008277	ADAM22	ADAM 22|DEE61|EIEE61|MDC2	ADAM metallopeptidase domain 22	protein-coding
197526	chr6	77457871	77458030	+	0	NA	Intergenic	Intergenic	5541	NM_000863	3351		NM_000863	ENSG00000135312	HTR1B	5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine receptor 1B	protein-coding
174942	chr4	49135851	49136150	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	149358	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
165582	chr3	101575801	101576230	+	0	NA	intron (NR_135231, intron 1 of 2)	intron (NR_135231, intron 1 of 2)	1835	NM_020357	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
72075	chr15	28900251	28900550	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	14426	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
129356	chr2	68771021	68772150	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	-3325	NM_014882	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
10907	chr1	83455801	83456130	+	0	NA	Intergenic	Intergenic	9911	NR_146478	101927542		NR_146478		LINC01712	-	long intergenic non-protein coding RNA 1712	ncRNA
226878	chr9	78210451	78211330	+	0	NA	Intergenic	Intergenic	-25185	NM_001098802	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
22697	chr1	223981301	223981680	+	0	NA	intron (NR_132119, intron 5 of 10)	intron (NR_132119, intron 5 of 10)	11154	NR_132119	441124		NR_132119		GTF2IP20	-	general transcription factor IIi pseudogene 20	pseudo
153987	chr22	30386821	30387780	+	0	NA	exon (NM_001017981, exon 1 of 9)	exon (NM_001017981, exon 1 of 9)	111	NM_001017981	200312		NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
124576	chr2	674021	674480	+	0	NA	intron (NM_001352680, intron 3 of 5)	intron (NM_001352680, intron 3 of 5)	2454	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
210891	chr7	101172851	101173030	+	0	NA	intron (NM_001369695, intron 3 of 3)	CpG	6296	NM_001369695	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
58911	chr13	19682451	19682750	+	0	NA	intron (NR_044998, intron 6 of 7)	L1ME2|LINE|L1	48941	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
49420	chr12	22687371	22687930	+	0	NA	3' UTR (NM_018638, exon 8 of 8)	3' UTR (NM_018638, exon 8 of 8)	62479	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
28299	chr10	46105721	46107280	+	0	NA	Intergenic	CpG	-2995	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
95070	chr17	32875471	32875630	+	0	NA	intron (NM_015194, intron 1 of 21)	MIR|SINE|MIR	1574	NM_015194	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
84963	chr16	31413051	31413350	+	0	NA	exon (NM_005353, exon 16 of 30)	exon (NM_005353, exon 16 of 30)	15160	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
164627	chr3	66395851	66396150	+	0	NA	intron (NM_001377344, intron 10 of 17)	intron (NM_001377344, intron 10 of 17)	9767	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
212430	chr7	128351071	128352650	+	0	NA	exon (NM_001174164, exon 6 of 6)	exon (NM_001174164, exon 6 of 6)	-7952	NM_018077	55131		NM_018077	ENSG00000106344	RBM28	ANES|NOP4	RNA binding motif protein 28	protein-coding
2927	chr1	11738321	11738850	+	0	NA	intron (NM_001040195, intron 1 of 3)	MIRb|SINE|MIR	2449	NM_020350	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
183445	chr5	78993471	78993630	+	0	NA	Intergenic	Intergenic	-7592	NM_198709	411		NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
198221	chr6	98834171	98835830	+	0	NA	exon (NM_005604, exon 1 of 1)	exon (NM_005604, exon 1 of 1)	426	NM_005604	5454		NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
87338	chr16	70300651	70301150	+	0	NA	intron (NM_001257175, intron 1 of 8)	HAL1|LINE|L1	1714	NM_007242	11269		NM_007242	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD-box helicase 19B	protein-coding
93676	chr17	19240201	19240400	+	0	NA	intron (NM_001102664, intron 1 of 7)	AluSz|SINE|Alu	2923	NM_001102664	22905		NM_014964	ENSG00000072134	EPN2	EHB21	epsin 2	protein-coding
199931	chr6	127896401	127897080	+	0	NA	intron (NM_001164687, intron 1 of 5).2	MER5B|DNA|hAT-Charlie	4341	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
235016	chrX	39978251	39978350	+	0	NA	Intergenic	Intergenic	119658	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
74709	chr15	63118771	63118930	+	0	NA	Intergenic	AluJb|SINE|Alu	-3011	NM_032857	114294		NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
30228	chr10	74965701	74965900	+	0	NA	intron (NM_001370135, intron 4 of 9).2	AluY|SINE|Alu	53014	NR_134476								
181767	chr5	50735651	50736180	+	0	NA	intron (NM_024615, intron 2 of 25)	L2b|LINE|L2	68501	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
70418	chr14	102022351	102022680	+	0	NA	intron (NM_001376, intron 42 of 77)	AluY|SINE|Alu	57942	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
14007	chr1	120711671	120712330	+	0	NA	Intergenic	Intergenic	-11939	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
97515	chr17	43943801	43944280	+	0	NA	Intergenic	Intergenic	-1564	NM_002722	5539		NM_002722	ENSG00000108849	PPY	PH|PNP|PP	pancreatic polypeptide	protein-coding
207920	chr7	50663251	50663350	+	0	NA	intron (NM_001371008, intron 4 of 15)	intron (NM_001371008, intron 4 of 15)	42001	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
44824	chr11	113995351	113995450	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	17900	NM_001161772	3359		NM_000869	ENSG00000166736	HTR3A	5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3	5-hydroxytryptamine receptor 3A	protein-coding
106785	chr18	23863521	23863930	+	0	NA	intron (NM_198129, intron 35 of 74)	intron (NM_198129, intron 35 of 74)	-9295	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
67827	chr14	73850951	73851050	+	0	NA	promoter-TSS (NR_163921)	promoter-TSS (NR_163921)	-831	NM_001146154	145482		NM_152444	ENSG00000140043	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
4018	chr1	18935601	18936380	+	0	NA	intron (NM_001136265, intron 1 of 8)	AluJo|SINE|Alu	20686	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
186821	chr5	139396671	139396830	+	0	NA	TTS (NM_194296)	TTS (NM_194296)	-1646	NM_001161546	389333		NM_001161546	ENSG00000228672	PROB1	C5orf65	proline rich basic protein 1	protein-coding
63809	chr14	21439971	21440280	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	-2850	NM_020920	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
103941	chr17	79844471	79845180	+	0	NA	Intergenic	CpG	-5385	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
204224	chr7	2533701	2533900	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	6726	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
55172	chr12	100201771	100202030	+	0	NA	intron (NR_048568, intron 1 of 10)	AluSz|SINE|Alu	1085	NR_048569	64431		NM_022496	ENSG00000075089	ACTR6	ARP6|CDA12|HSPC281|MSTP136|hARP6|hARPX	actin related protein 6	protein-coding
16967	chr1	155944901	155945400	+	0	NA	Intergenic	Intergenic	3512	NM_181885	339403		NM_181885	ENSG00000173080	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin family peptide/INSL5 receptor 4	protein-coding
41256	chr11	65831271	65831630	+	0	NA	Intergenic	Intergenic	-2513	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
184157	chr5	95645471	95645780	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-1152	NM_001375394	317671		NM_173362	ENSG00000175449	RFESD	-	Rieske Fe-S domain containing	protein-coding
179496	chr4	184641871	184642030	+	0	NA	intron (NM_032991, intron 1 of 6)	L1MC1|LINE|L1	7497	NM_004346	836		NM_004346	ENSG00000164305	CASP3	CPP32|CPP32B|SCA-1	caspase 3	protein-coding
80301	chr16	2265251	2265800	+	0	NA	intron (NM_080594, intron 1 of 7)	AluSx4|SINE|Alu	1812	NM_001286625	10921		NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
195566	chr6	37494771	37494930	+	0	NA	intron (NM_138493, intron 1 of 3)	AluSz|SINE|Alu	5043	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
163075	chr3	50079451	50079750	+	0	NA	Intergenic	AluSq2|SINE|Alu	-9319	NR_036627	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
27715	chr10	33336151	33337230	+	0	NA	Intergenic	CpG-2786	-1785	NR_045259	8829		NM_003873	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
134922	chr2	151280621	151280880	+	0	NA	intron (NM_004688, intron 3 of 7)	intron (NM_004688, intron 3 of 7)	8918	NM_004688	9111		NM_004688	ENSG00000123609	NMI	-	N-myc and STAT interactor	protein-coding
210346	chr7	99551251	99552680	+	0	NA	5' UTR (NM_145111, exon 1 of 2)	5' UTR (NM_145111, exon 1 of 2)	149	NM_145111	221786		NM_145111	ENSG00000221909	FAM200A	C7orf38	family with sequence similarity 200 member A	protein-coding
197722	chr6	87009501	87009950	+	0	NA	intron (NM_000865, intron 1 of 1)	SVA_F|Retroposon|SVA	72197	NM_000865	3354		NM_000865	ENSG00000168830	HTR1E	5-HT1E	5-hydroxytryptamine receptor 1E	protein-coding
72820	chr15	40110271	40110430	+	0	NA	Intergenic	Intergenic	-1471	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
99194	chr17	49502201	49502530	+	0	NA	intron (NM_002507, intron 2 of 5)	intron (NM_002507, intron 2 of 5)	7072	NM_002507	4804		NM_002507	ENSG00000064300	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
80972	chr16	3900051	3900550	+	0	NA	Intergenic	L1MB8|LINE|L1	-19587	NM_004380	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
165786	chr3	105792271	105793050	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	74931	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
27674	chr10	33106851	33107150	+	0	NA	intron (NR_160030, intron 1 of 2)	LTR1F2|LTR|ERV1	9807	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
115259	chr19	14535601	14536230	+	0	NA	intron (NM_138501, intron 1 of 12)	intron (NM_138501, intron 1 of 12)	6321	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
1558	chr1	3494571	3494950	+	0	NA	intron (NM_001409, intron 30 of 36)	intron (NM_001409, intron 30 of 36)	40095	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
32778	chr10	104352021	104352580	+	0	NA	intron (NR_108036, intron 1 of 1)	intron (NR_108036, intron 1 of 1)	1275	NR_108036	100505869		NR_108036	ENSG00000231233	CFAP58-DT	CCDC147-AS1|CFAP58-AS1|lncITPRIP-1	CFAP58 divergent transcript	ncRNA
86003	chr16	57470521	57470780	+	0	NA	intron (NM_032940, intron 8 of 8)	intron (NM_032940, intron 8 of 8)	7971	NM_032940	5432		NM_002694	ENSG00000102978	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	RNA polymerase II subunit C	protein-coding
42632	chr11	72240921	72241850	+	0	NA	intron (NM_005169, intron 1 of 2)	CpG-4666	2791	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
232270	chr9	134421251	134421850	+	0	NA	intron (NM_001291921, intron 4 of 8)	MLT1D|LTR|ERVL-MaLR	14990	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
124772	chr2	7119071	7119230	+	0	NA	Intergenic	Intergenic	-41270	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
20813	chr1	201239651	201239830	+	0	NA	Intergenic	L1PA3|LINE|L1	-43712	NM_000299	5317		NM_000299	ENSG00000081277	PKP1	B6P|EDSFS	plakophilin 1	protein-coding
7785	chr1	36232351	36232750	+	0	NA	intron (NM_001321471, intron 2 of 12)	L2a|LINE|L2	8107	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
179837	chr5	478321	479350	+	0	NA	intron (NR_125375, intron 5 of 6)	intron (NR_125375, intron 5 of 6)	5599	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
214658	chr7	150879521	150879980	+	0	NA	Intergenic	L1PB2|LINE|L1	27233	NM_001091	26		NM_001091	ENSG00000002726	AOC1	ABP|ABP1|DAO|DAO1|KAO|KDAO	amine oxidase copper containing 1	protein-coding
95825	chr17	38760251	38760350	+	0	NA	intron (NR_104194, intron 3 of 4)	intron (NR_104194, intron 3 of 4)	7559	NR_104195	5691		NM_002795	ENSG00000277791	PSMB3	HC10-II	proteasome 20S subunit beta 3	protein-coding
218176	chr8	41969701	41970100	+	0	NA	intron (NM_001305878, intron 8 of 13)	L2c|LINE|L2	-73159	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
76110	chr15	72507851	72508200	+	0	NA	intron (NM_005744, intron 1 of 13)	MER5B|DNA|hAT-Charlie	33695	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
62064	chr13	94139421	94139550	+	0	NA	intron (NM_005708, intron 4 of 8)	intron (NM_005708, intron 4 of 8)	48506	NR_046535	100873972		NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
118670	chr19	37596171	37596330	+	0	NA	intron (NM_001172225, intron 1 of 4)	intron (NM_001172225, intron 1 of 4)	1374	NM_001172226	163255		NM_152606	ENSG00000171817	ZNF540	Nbla10512	zinc finger protein 540	protein-coding
56780	chr12	120188521	120188780	+	0	NA	intron (NM_006836, intron 2 of 57)	AluY|SINE|Alu	6065	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
781	chr1	1534871	1535030	+	0	NA	TTS (NM_001170536)	TTS (NM_001170536)	5674	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
205960	chr7	26157901	26158100	+	0	NA	intron (NM_004289, intron 1 of 3)	MLT1C|LTR|ERVL-MaLR	5802	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
155874	chr22	39496401	39497050	+	0	NA	Intergenic	MIRb|SINE|MIR	-3375	NM_001304564	54471		NM_013298	ENSG00000100335	MIEF1	AltMIEF1|D3A|HSU79252|L0R8F8|MID51|MIEF1-MP|OPA14|SMCR7L|dJ1104E15.3	mitochondrial elongation factor 1	protein-coding
203191	chr6	167350201	167350400	+	0	NA	Intergenic	Intergenic	25214	NM_031949	83887		NM_031949	ENSG00000120440	TTLL2	C6orf104|NYD-TSPG|dJ366N23.3	tubulin tyrosine ligase like 2	protein-coding
198433	chr6	106098501	106100180	+	0	NA	exon (NM_001198, exon 4 of 7)	exon (NM_001198, exon 4 of 7)	399	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
214908	chr7	151452801	151453000	+	0	NA	Intergenic	Intergenic	-12087	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
21480	chr1	205658851	205659950	+	0	NA	exon (NM_033102, exon 5 of 5)	exon (NM_033102, exon 5 of 5)	21109	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
84072	chr16	29598671	29598950	+	0	NA	TTS (NR_037451).2	TTS (NR_037451).2	455	NR_037451	100500917		NR_037451	ENSG00000265462	MIR3680-1	MIR3680|hsa-mir-3680-1	microRNA 3680-1	ncRNA
32941	chr10	110354271	110354750	+	0	NA	Intergenic	Intergenic	-49590	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
156123	chr22	40104271	40105100	+	0	NA	intron (NM_001024843, intron 1 of 23)	L2b|LINE|L2	59868	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
234029	chrX	3788771	3789150	+	0	NA	Intergenic	Intergenic	54934	NR_034031	389906		NM_001045547	ENSG00000285756	LOC389906	-	zinc finger protein 839 pseudogene	pseudo
104027	chr17	80124421	80125030	+	0	NA	Intergenic	Intergenic	22403	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
229165	chr9	114503571	114504100	+	0	NA	promoter-TSS (NM_001083885)	promoter-TSS (NM_001083885)	-620	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
164452	chr3	59480371	59480750	+	0	NA	Intergenic	Intergenic	177937	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
40103	chr11	62804601	62807000	+	0	NA	promoter-TSS (NM_001081491)	promoter-TSS (NM_001081491)	-360	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
147282	chr20	57595921	57596180	+	0	NA	Intergenic	Intergenic	24376	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
13051	chr1	111399621	111400080	+	0	NA	Intergenic	L1PA6|LINE|L1	-9999	NR_029429	441897		NR_029429	ENSG00000290561	PGBP	PGCP1	pepsinogen B, pseudogene	pseudo
140050	chr2	231383451	231383950	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-12010	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
116987	chr19	18888951	18889530	+	0	NA	intron (NM_021267, intron 2 of 7)	intron (NM_021267, intron 2 of 7)	6918	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
226600	chr9	73157821	73158700	+	0	NA	intron (NM_000700, intron 1 of 12)	intron (NM_000700, intron 1 of 12)	6395	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
135856	chr2	170826401	170826750	+	0	NA	intron (NM_000817, intron 3 of 16)	AluSx1|SINE|Alu	9688	NM_000817	2571		NM_000817	ENSG00000128683	GAD1	CPSQ1|DEE89|GAD|SCP	glutamate decarboxylase 1	protein-coding
189120	chr5	170598701	170598900	+	0	NA	intron (NM_014592, intron 1 of 7)	intron (NM_014592, intron 1 of 7)	82670	NR_136214	105377716		NR_136214	ENSG00000253591	KCNIP1-AS1	-	KCNIP1 antisense RNA 1	ncRNA
232543	chr9	136343951	136344050	+	0	NA	intron (NM_001145638, intron 9 of 13)	intron (NM_001145638, intron 9 of 13)	-9057	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
147913	chr20	62902651	62902830	+	0	NA	intron (NM_001193369, intron 6 of 15)	intron (NM_001193369, intron 6 of 15)	-19837	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
8747	chr1	42702721	42703680	+	0	NA	non-coding (NR_132737, exon 7 of 7)	non-coding (NR_132737, exon 7 of 7)	20064	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
126106	chr2	25960751	25961050	+	0	NA	intron (NM_002254, intron 1 of 7)	AluJb|SINE|Alu	21597	NM_002254	3797		NM_002254	ENSG00000084731	KIF3C	-	kinesin family member 3C	protein-coding
96	chr1	418701	418900	+	0	NA	Intergenic	L1M4|LINE|L1	32878	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
100823	chr17	64092971	64093530	+	0	NA	intron (NM_001433, intron 2 of 21)	intron (NM_001433, intron 2 of 21)	36894	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
193844	chr6	31532901	31533350	+	0	NA	intron (NM_080598, intron 6 of 10).7	intron (NM_080598, intron 6 of 10).7	3324	NR_003140	692233		NR_003140	ENSG00000201785	SNORD117	U83	small nucleolar RNA, C/D box 117	snoRNA
35167	chr11	771371	771730	+	0	NA	intron (NM_001318824, intron 4 of 6)	intron (NM_001318824, intron 4 of 6)	5937	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
234323	chrX	13937971	13938550	+	0	NA	intron (NM_001001994, intron 1 of 6)	CpG	378	NM_001001994	2824		NM_005278	ENSG00000046653	GPM6B	M6B	glycoprotein M6B	protein-coding
79540	chr16	886651	886750	+	0	NA	intron (NM_001352017, intron 6 of 11)	intron (NM_001352017, intron 6 of 11)	-34333	NR_110946	101929387		NR_110945	ENSG00000260439	LMF1-AS1	LA16c-366D3.1	LMF1 antisense RNA 1	ncRNA
169365	chr3	160419801	160420200	+	0	NA	intron (NM_005496, intron 11 of 22)	LTR33|LTR|ERVL	15255	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
60913	chr13	46176671	46177200	+	0	NA	intron (NM_002298, intron 1 of 15)	intron (NM_002298, intron 1 of 15)	5242	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
39263	chr11	57744121	57744900	+	0	NA	TTS (NM_001321335)	TTS (NM_001321335)	3019	NM_170746	280636		NM_170746	ENSG00000211450	SELENOH	C11orf31|C17orf10|SELH	selenoprotein H	protein-coding
226950	chr9	79672271	79672430	+	0	NA	intron (NR_104239, intron 9 of 20)	intron (NR_104239, intron 9 of 20)	99173	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
18526	chr1	161914971	161915150	+	0	NA	intron (NM_007348, intron 15 of 15)	L2a|LINE|L2	109405	NM_001347700	25903		NM_015441	ENSG00000162745	OLFML2B	-	olfactomedin like 2B	protein-coding
202456	chr6	158071701	158072450	+	0	NA	intron (NM_003898, intron 15 of 26)	intron (NM_003898, intron 15 of 26)	54982	NM_001178088	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
150051	chr21	37380471	37381030	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	13193	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
78004	chr15	89673171	89673400	+	0	NA	exon (NM_001145311, exon 3 of 9)	exon (NM_001145311, exon 3 of 9)	6082	NM_001145311	5346		NM_002666	ENSG00000166819	PLIN1	FPLD4|PERI|PLIN	perilipin 1	protein-coding
8608	chr1	41623121	41623380	+	0	NA	intron (NM_001127714, intron 2 of 7)	intron (NM_001127714, intron 2 of 7)	-138567	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
104249	chr17	80739201	80739640	+	0	NA	intron (NM_020761, intron 5 of 33)	L1M3|LINE|L1	66212	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
234247	chrX	13091081	13091600	+	0	NA	Intergenic	Intergenic	-46720	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
214371	chr7	149710871	149711030	+	0	NA	Intergenic	L1MEd|LINE|L1	-4061	NM_001290187	84626		NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
15503	chr1	150465921	150466180	+	0	NA	intron (NM_015203, intron 10 of 10)	intron (NM_015203, intron 10 of 10)	-21369	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
86669	chr16	67483771	67484130	+	0	NA	promoter-TSS (NM_001138)	promoter-TSS (NM_001138)	-403	NM_001138	181		NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related neuropeptide	protein-coding
89028	chr16	88366751	88366850	+	0	NA	Intergenic	Intergenic	-16159	NM_001367624	84627		NM_001127464	ENSG00000225614	ZNF469	BCS|BCS1|Zfp469	zinc finger protein 469	protein-coding
59468	chr13	26051671	26052280	+	0	NA	promoter-TSS (NM_001007538)	promoter-TSS (NM_001007538)	41	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
119262	chr19	39512771	39513580	+	0	NA	Intergenic	Intergenic	-1938	NM_182704	348303		NM_182704	ENSG00000186838	SELENOV	SELV	selenoprotein V	protein-coding
233695	chrX	1205451	1207200	+	0	NA	intron (NR_110830, intron 3 of 7).2	intron (NR_110830, intron 3 of 7).2	6324	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
109050	chr18	79798851	79799150	+	0	NA	Intergenic	Intergenic	-64668	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
59100	chr13	21143451	21143550	+	0	NA	intron (NM_005870, intron 2 of 3)	intron (NM_005870, intron 2 of 3)	2954	NM_001366643	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
229504	chr9	122264071	122265980	+	0	NA	promoter-TSS (NM_033117)	promoter-TSS (NM_033117)	143	NR_144421	92399		NM_138777	ENSG00000148187	MRRF	MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding
219551	chr8	78274021	78274100	+	0	NA	Intergenic	MER30B|DNA|hAT-Charlie	-242280	NM_006823	5569		NM_006823	ENSG00000171033	PKIA	PRKACN1	cAMP-dependent protein kinase inhibitor alpha	protein-coding
205648	chr7	22820471	22820630	+	0	NA	intron (NR_168014, intron 1 of 2)	intron (NR_168014, intron 1 of 2)	2299	NR_168015	54543		NM_019059	ENSG00000196683	TOMM7	GMPGS|TOM7	translocase of outer mitochondrial membrane 7	protein-coding
127790	chr2	44225771	44226200	+	0	NA	intron (NM_177968, intron 5 of 5)	AluYm1|SINE|Alu	-49495	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
38696	chr11	46611901	46612980	+	0	NA	intron (NM_173811, intron 2 of 2)	intron (NM_173811, intron 2 of 2)	4787	NM_173811	283254		NM_173811	ENSG00000180423	HARBI1	C11orf77	harbinger transposase derived 1	protein-coding
134044	chr2	131122571	131122930	+	0	NA	intron (NM_001267064, intron 2 of 7)	intron (NM_001267064, intron 2 of 7)	17903	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
149823	chr21	35016871	35017230	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	22376	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
27927	chr10	41910451	41912150	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	456745	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
195598	chr6	37565801	37566660	+	0	NA	Intergenic	Intergenic	-10808	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
157002	chr22	42514421	42515150	+	0	NA	intron (NM_015703, intron 4 of 6)	intron (NM_015703, intron 4 of 6)	5011	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
179468	chr4	184466751	184467050	+	0	NA	intron (NM_002199, intron 1 of 8)	Tigger3a|DNA|TcMar-Tigger	7650	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
74217	chr15	56242951	56244240	+	0	NA	promoter-TSS (NM_001385040)	promoter-TSS (NM_001385040)	284	NM_022841	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
64013	chr14	22500351	22500450	+	0	NA	Intergenic	Intergenic	-17441	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
141832	chr20	409851	410330	+	0	NA	intron (NR_136659, intron 2 of 11)	intron (NR_136659, intron 2 of 11)	1791	NR_136659	10616		NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RANBP2-type and C3HC4-type zinc finger containing 1	protein-coding
127461	chr2	42206251	42206350	+	0	NA	intron (NM_019063, intron 1 of 22)	AluJr|SINE|Alu	-36069	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
58152	chr12	124925171	124925630	+	0	NA	Intergenic	Intergenic	9853	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
34427	chr10	132411571	132412350	+	0	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	14760	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
23909	chr1	234989171	234989530	+	0	NA	Intergenic	Intergenic	-25351	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
125233	chr2	10379651	10380750	+	0	NA	intron (NM_001258359, intron 1 of 4)	intron (NM_001258359, intron 1 of 4)	11436	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
96374	chr17	40103321	40104130	+	0	NA	Intergenic	Intergenic	-3136	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
68421	chr14	81200051	81200580	+	0	NA	intron (NM_015859, intron 4 of 8)	intron (NM_015859, intron 4 of 8)	2519	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
20449	chr1	198538721	198539580	+	0	NA	intron (NM_133326, intron 2 of 4)	intron (NM_133326, intron 2 of 4)	1530	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
94316	chr17	28756971	28757130	+	0	NA	3' UTR (NM_001288634, exon 3 of 3)	3' UTR (NM_001288634, exon 3 of 3)	13039	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
169607	chr3	171247021	171247750	+	0	NA	intron (NM_001161560, intron 2 of 31)	L2|LINE|L2	-140626	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
97840	chr17	44949621	44950180	+	0	NA	Intergenic	Intergenic	-2127	NM_001265577	146909		NM_001080443	ENSG00000186185	KIF18B	-	kinesin family member 18B	protein-coding
49893	chr12	39379301	39379500	+	0	NA	intron (NM_001378440, intron 1 of 36)	intron (NM_001378440, intron 1 of 36)	63720	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
181748	chr5	50710771	50711800	+	0	NA	intron (NM_024615, intron 2 of 25)	MLT1L|LTR|ERVL-MaLR	43871	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
172672	chr4	2732801	2733000	+	0	NA	TTS (NM_001256666)	TTS (NM_001256666)	23436	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
122590	chr19	49701451	49701850	+	0	NA	intron (NR_108072, intron 8 of 20)	CpG-14948	10154	NM_001378484	126129		NM_152359	ENSG00000169169	CPT1C	CATL1|CPT I-C|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73	carnitine palmitoyltransferase 1C	protein-coding
57763	chr12	122983151	122983750	+	0	NA	TTS (NM_020845)	TTS (NM_020845)	3390	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
120416	chr19	43820271	43820900	+	0	NA	promoter-TSS (NM_182573)	promoter-TSS (NM_182573)	71	NM_182573	284348		NM_182573	ENSG00000159871	LYPD5	HALDISIN|PRO4356	LY6/PLAUR domain containing 5	protein-coding
49922	chr12	39629851	39630700	+	0	NA	intron (NR_135051, intron 1 of 18)	intron (NR_135051, intron 1 of 18)	4092	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
218092	chr8	38959251	38959550	+	0	NA	intron (NM_021623, intron 10 of 11)	L2b|LINE|L2	-14828	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
149241	chr21	25606921	25607900	+	0	NA	promoter-TSS (NM_080794)	promoter-TSS (NM_080794)	71	NM_080794	54148		NM_017446	ENSG00000154719	MRPL39	C21orf92|COXPD59|L39mt|L5mt|MRP-L5|MRPL5|MSTP003|PRED22|PRED66|RPML5|mL39	mitochondrial ribosomal protein L39	protein-coding
237644	chrX	124226951	124227150	+	0	NA	Intergenic	Intergenic	-105610	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
1896	chr1	6448751	6450630	+	0	NA	intron (NM_031475, intron 8 of 12)	intron (NM_031475, intron 8 of 12)	16483	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
186570	chr5	138481421	138481950	+	0	NA	Intergenic	AluJo|SINE|Alu	16206	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
188856	chr5	159261671	159261980	+	0	NA	Intergenic	AluSz|SINE|Alu	-1465	NM_145049	134510		NM_145049	ENSG00000164332	UBLCP1	CPUB1	ubiquitin like domain containing CTD phosphatase 1	protein-coding
189773	chr5	176654951	176655450	+	0	NA	intron (NM_001366492, intron 3 of 6)	intron (NM_001366492, intron 3 of 6)	7716	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
169957	chr3	179149001	179149850	+	0	NA	intron (NM_006218, intron 1 of 20)	intron (NM_006218, intron 1 of 20)	1068	NM_006218	5290		NM_006218	ENSG00000121879	PIK3CA	CCM4|CLAPO|CLOVE|CWS5|HMH|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding
194193	chr6	32148651	32149430	+	0	NA	3' UTR (NM_001363780, exon 6 of 6).7	3' UTR (NM_001363780, exon 6 of 6).7	2899	NM_030651	80863		NM_030651	ENSG00000204314	PRRT1	C6orf31|DSPD1|IFITMD7|NG5|SynDIG4	proline rich transmembrane protein 1	protein-coding
21266	chr1	204392671	204393230	+	0	NA	Intergenic	L1ME1|LINE|L1	18867	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
218149	chr8	41829901	41830100	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	-32378	NM_020477	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
109444	chr19	736501	736700	+	0	NA	intron (NM_001040134, intron 7 of 7)	intron (NM_001040134, intron 7 of 7)	-14512	NM_173481	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
159240	chr3	12920971	12921330	+	0	NA	intron (NM_014869, intron 5 of 13)	intron (NM_014869, intron 5 of 13)	-35939	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
238478	chrX	153411271	153412300	+	0	NA	Intergenic	CpG	-6538	NM_001136273	139735		NM_001136273	ENSG00000189420	ZFP92	ZNF897	ZFP92 zinc finger protein	protein-coding
231675	chr9	131691101	131691950	+	0	NA	intron (NM_001377935, intron 1 of 26)	MER65-int|LTR|ERV1	18317	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
91591	chr17	5240501	5241100	+	0	NA	Intergenic	LTR7C|LTR|ERV1	-5940	NM_001271842	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
95599	chr17	37478071	37478230	+	0	NA	3' UTR (NM_001166105, exon 16 of 16).2	3' UTR (NM_001166105, exon 16 of 16).2	-11741	NM_007026	11072		NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
134450	chr2	143162001	143162700	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	32931	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
167409	chr3	129000621	129001580	+	0	NA	promoter-TSS (NM_001377500)	promoter-TSS (NM_001377500)	-204	NM_024768	79825		NM_024768	ENSG00000114654	EFCC1	C3orf73|CCDC48	EF-hand and coiled-coil domain containing 1	protein-coding
13826	chr1	117625671	117625830	+	0	NA	3' UTR (NM_017709, exon 2 of 2)	3' UTR (NM_017709, exon 2 of 2)	19702	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
66284	chr14	61382251	61382880	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	61122	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
189674	chr5	176393921	176394630	+	0	NA	intron (NM_001364126, intron 4 of 4)	MER5A1|DNA|hAT-Charlie	-5348	NM_001256539	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
86178	chr16	57813771	57814280	+	0	NA	intron (NR_169553, intron 2 of 3)	MIR|SINE|MIR	3388	NM_001278081	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
72738	chr15	39125901	39126130	+	0	NA	Intergenic	Intergenic	-124654	NR_144507	400360		NM_207445	ENSG00000175746	LINC02915	C15orf54	long intergenic non-protein coding RNA 2915	ncRNA
145524	chr20	44073851	44073950	+	0	NA	Intergenic	Intergenic	113288	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
197895	chr6	89347651	89348300	+	0	NA	intron (NM_016021, intron 1 of 7)	intron (NM_016021, intron 1 of 7)	4747	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
24312	chr1	236800271	236800430	+	0	NA	intron (NM_000254, intron 1 of 32)	intron (NM_000254, intron 1 of 32)	5058	NM_000254	4548		NM_000254	ENSG00000116984	MTR	HMAG|MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
183769	chr5	81748871	81752230	+	0	NA	intron (NM_001256733, intron 1 of 15)	CpG	703	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
237743	chrX	129602071	129602430	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	52706	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
50890	chr12	49264021	49266900	+	0	NA	intron (NM_032704, intron 1 of 3)	intron (NM_032704, intron 1 of 3)	378	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
5983	chr1	26961301	26961630	+	0	NA	promoter-TSS (NM_152365)	promoter-TSS (NM_152365)	-997	NM_152365	126695		NM_152365	ENSG00000175707	KDF1	C1orf172|ECTD12	keratinocyte differentiation factor 1	protein-coding
100241	chr17	59359721	59359980	+	0	NA	intron (NM_001005404, intron 2 of 4)	intron (NM_001005404, intron 2 of 4)	-6233	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
210379	chr7	99675071	99675630	+	0	NA	intron (NM_000777, intron 2 of 12)	intron (NM_000777, intron 2 of 12)	4646	NM_001291829	1577		NM_000777	ENSG00000106258	CYP3A5	CP35|CYPIIIA5|P450PCN3|PCN3	cytochrome P450 family 3 subfamily A member 5	protein-coding
37049	chr11	12201071	12201230	+	0	NA	intron (NR_144415, intron 2 of 26)	intron (NR_144415, intron 2 of 26)	37467	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
225803	chr9	37575521	37576780	+	0	NA	intron (NM_012166, intron 1 of 10)	CpG	230	NM_012166	26267		NM_012166	ENSG00000147912	FBXO10	FBX10|PRMT11	F-box protein 10	protein-coding
22898	chr1	225855621	225856130	+	0	NA	intron (NM_014698, intron 18 of 24)	intron (NM_014698, intron 18 of 24)	26505	NM_014698	9725		NM_014698	ENSG00000196187	TMEM63A	HLD19|KIAA0792	transmembrane protein 63A	protein-coding
158919	chr3	10016671	10017230	+	0	NA	TTS (NR_002786)	TTS (NR_002786)	-5702	NM_018447	55831		NM_018447	ENSG00000125037	EMC3	POB|TMEM111	ER membrane protein complex subunit 3	protein-coding
118999	chr19	38891021	38891680	+	0	NA	intron (NR_034146, intron 2 of 13)	AluSx|SINE|Alu	2805	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
228888	chr9	112734651	112735350	+	0	NA	Intergenic	Intergenic	-15760	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
154059	chr22	30605201	30606000	+	0	NA	intron (NM_001282328, intron 1 of 16)	intron (NM_001282328, intron 1 of 16)	1413	NM_001282328	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
236153	chrX	63752451	63752750	+	0	NA	intron (NM_001369036, intron 1 of 10)	intron (NM_001369036, intron 1 of 10)	2523	NM_001353928	23229		NM_015185	ENSG00000131089	ARHGEF9	COLLYBISTIN|DEE8|EIEE8|HPEM-2|PEM-2|PEM2	Cdc42 guanine nucleotide exchange factor 9	protein-coding
89156	chr16	88528921	88529330	+	0	NA	intron (NM_153813, intron 6 of 9)	AluJr4|SINE|Alu	1928	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
108775	chr18	77146501	77147030	+	0	NA	Intergenic	Intergenic	-13982	NM_001025101	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
91262	chr17	4003071	4003430	+	0	NA	Intergenic	Intergenic	26147	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
35369	chr11	1259801	1260530	+	0	NA	intron (NM_002458, intron 46 of 48)	intron (NM_002458, intron 46 of 48)	3560	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
214877	chr7	151402001	151402200	+	0	NA	intron (NM_001284261, intron 1 of 4)	MLT1D|LTR|ERVL-MaLR	-7061	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
31361	chr10	93497921	93498680	+	0	NA	intron (NM_018131, intron 1 of 8)	intron (NM_018131, intron 1 of 8)	1688	NM_001127182	55165		NM_018131	ENSG00000138180	CEP55	C10orf3|CT111|MARCH|URCC6	centrosomal protein 55	protein-coding
50865	chr12	49178451	49179130	+	0	NA	Intergenic	AluSc|SINE|Alu	10290	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
86871	chr16	67968001	67969830	+	0	NA	promoter-TSS (NM_005072)	promoter-TSS (NM_005072)	-221	NM_001145962	6560		NM_005072	ENSG00000124067	SLC12A4	CTC-479C5.17|KCC1|hKCC1	solute carrier family 12 member 4	protein-coding
140444	chr2	233151271	233151630	+	0	NA	intron (NM_001017915, intron 9 of 26).2	intron (NM_001017915, intron 9 of 26).2	91108	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
24588	chr1	245808251	245808630	+	0	NA	intron (NM_001375966, intron 7 of 8)	intron (NM_001375966, intron 7 of 8)	180111	NM_001375965	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
221818	chr8	128029801	128030000	+	0	NA	intron (NR_003367, intron 5 of 8)	AluJr|SINE|Alu	-19252	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
151989	chr22	19171201	19172800	+	0	NA	non-coding (NR_103767, exon 1 of 1)	non-coding (NR_103767, exon 1 of 1)	294	NR_103767	100652736		NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
51336	chr12	51371171	51371930	+	0	NA	intron (NM_007210, intron 4 of 11)	intron (NM_007210, intron 4 of 11)	-19767	NM_001267615	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
72569	chr15	34555121	34555680	+	0	NA	intron (NM_001023567, intron 1 of 23)	intron (NM_001023567, intron 1 of 23)	-27029	NR_036261	100422845		NR_036261	ENSG00000221065	MIR1233-2	-	microRNA 1233-2	ncRNA
22191	chr1	212354601	212354800	+	0	NA	intron (NM_001199756, intron 8 of 12)	AluJr4|SINE|Alu	1882	NR_004389	692157		NR_004389	ENSG00000201544	SNORA16B	U98b	small nucleolar RNA, H/ACA box 16B	snoRNA
179331	chr4	182812771	182813750	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	103993	NM_001351747	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
154353	chr22	32796971	32797200	+	0	NA	intron (NM_133633, intron 5 of 11)	intron (NM_133633, intron 5 of 11)	-4620	NM_000362	7078		NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
153680	chr22	29072601	29073310	+	0	NA	promoter-TSS (NM_032045)	promoter-TSS (NM_032045)	-80	NM_001039570	83999		NM_032045	ENSG00000183762	KREMEN1	ECTD13|KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
127338	chr2	39109851	39110150	+	0	NA	intron (NM_001382394, intron 1 of 22)	intron (NM_001382394, intron 1 of 22)	11051	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
210073	chr7	96479151	96479480	+	0	NA	Intergenic	Intergenic	24208	NR_163949	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
23136	chr1	226706721	226707230	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-31907	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
139427	chr2	222860551	222862500	+	0	NA	intron (NM_001354159, intron 1 of 14)	CpG	489	NM_001354158	2181		NM_004457	ENSG00000123983	ACSL3	ACS3|FACL3|LACS 3|LACS3|PRO2194	acyl-CoA synthetase long chain family member 3	protein-coding
89398	chr16	88817351	88817850	+	0	NA	intron (NM_000512, intron 13 of 13)	intron (NM_000512, intron 13 of 13)	-5672	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
209429	chr7	76364421	76365100	+	0	NA	Intergenic	Intergenic	-5769	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
118124	chr19	34776721	34776980	+	0	NA	Intergenic	MER66B|LTR|ERV1	-3635	NM_001007248	148103		NM_001007247	ENSG00000153896	ZNF599	-	zinc finger protein 599	protein-coding
230021	chr9	127203671	127204450	+	0	NA	intron (NM_001366400, intron 14 of 18)	intron (NM_001366400, intron 14 of 18)	-59602	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
52453	chr12	55938151	55938680	+	0	NA	intron (NR_147027, intron 6 of 25)	intron (NR_147027, intron 6 of 25)	2407	NM_001351037	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
212375	chr7	127855371	127855750	+	0	NA	intron (NM_014390, intron 12 of 23)	MIRb|SINE|MIR	-141949	NR_027330	27099		NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
164920	chr3	71158471	71158630	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	-26353	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
117058	chr19	18998421	18998680	+	0	NA	intron (NR_147914, intron 8 of 11)	intron (NR_147914, intron 8 of 11)	34967	NR_147914	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
68509	chr14	88554371	88555480	+	0	NA	promoter-TSS (NM_007039)	promoter-TSS (NM_007039)	82	NM_007039	11099		NM_007039	ENSG00000070778	PTPN21	PTPD1|PTPRL10	protein tyrosine phosphatase non-receptor type 21	protein-coding
201171	chr6	142947101	142948080	+	0	NA	Intergenic	CpG-24066	-2414	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
212840	chr7	130669971	130670350	+	0	NA	intron (NM_052933, intron 7 of 7)	intron (NM_052933, intron 7 of 7)	-1402	NM_001290033	26958		NM_012133	ENSG00000158623	COPG2	2-COP|gamma-2-COP	COPI coat complex subunit gamma 2	protein-coding
179004	chr4	163577021	163577280	+	0	NA	intron (NM_001166373, intron 6 of 7)	L1PA3|LINE|L1	36384	NM_017923	55016		NM_017923	ENSG00000145416	MARCHF1	MARCH-I|MARCH1|RNF171	membrane associated ring-CH-type finger 1	protein-coding
153569	chr22	26661351	26661450	+	0	NA	intron (NR_033319, intron 1 of 3)	intron (NR_033319, intron 1 of 3)	3918	NR_033319	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
226422	chr9	70563551	70564250	+	0	NA	intron (NM_206947, intron 21 of 24)	intron (NM_206947, intron 21 of 24)	-149243	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
183835	chr5	86619651	86619750	+	0	NA	promoter-TSS (NR_145802)	promoter-TSS (NR_145802)	-806	NR_145802	109623460		NR_037402		SNORD138	MIR3607|mir-3607	small nucleolar RNA, C/D box 138	snoRNA
88087	chr16	81503671	81504280	+	0	NA	intron (NM_030629, intron 1 of 20)	MIRb|SINE|MIR	8621	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
137629	chr2	197355901	197356400	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-45370	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
90804	chr17	2222651	2223830	+	0	NA	intron (NM_001256827, intron 3 of 11)	intron (NM_001256827, intron 3 of 11)	-9438	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
207627	chr7	45007801	45008680	+	0	NA	intron (NM_001167934, intron 1 of 8)	AluSc|SINE|Alu	8039	NM_001363459	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
76451	chr15	74826251	74827150	+	0	NA	promoter-TSS (NM_001030005)	promoter-TSS (NM_001030005)	73	NM_001030005	594855		NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII|Nbla11589	complexin 3	protein-coding
44978	chr11	116909221	116909680	+	0	NA	intron (NM_001366687, intron 4 of 4)	L1ME3B|LINE|L1	-71500	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
62998	chr13	112443971	112444230	+	0	NA	Intergenic	Intergenic	67745	NM_145248	122258		NM_145248	ENSG00000153498	SPACA7	C13orf28	sperm acrosome associated 7	protein-coding
143681	chr20	32052151	32053050	+	0	NA	intron (NM_002110, intron 1 of 12)	CpG	358	NM_001172130	3055		NM_002110	ENSG00000101336	HCK	AIPCV|JTK9|p59Hck|p61Hck	HCK proto-oncogene, Src family tyrosine kinase	protein-coding
170480	chr3	185977301	185977730	+	0	NA	intron (NR_151491, intron 3 of 3)	intron (NR_151491, intron 3 of 3)	17572	NR_151491	344887		NR_033752	ENSG00000290862	NMRAL2P	NMRAL1P1	NmrA like redox sensor 2, pseudogene	pseudo
42415	chr11	69066021	69066480	+	0	NA	intron (NM_139075, intron 7 of 24)	intron (NM_139075, intron 7 of 24)	-16926	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
104276	chr17	80811451	80812350	+	0	NA	intron (NM_020761, intron 7 of 33)	intron (NM_020761, intron 7 of 33)	-6268	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
93132	chr17	17728101	17728300	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	38102	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
11375	chr1	89650801	89651630	+	0	NA	intron (NM_032270, intron 1 of 2)	MER58C|DNA|hAT-Charlie	18095	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
186243	chr5	134410451	134410550	+	0	NA	intron (NM_080656, intron 1 of 2)	intron (NM_080656, intron 1 of 2)	1381	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
146771	chr20	50906671	50907530	+	0	NA	intron (NM_001347511, intron 1 of 4)	AluY|SINE|Alu	2691	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
182002	chr5	55235971	55236130	+	0	NA	Intergenic	AluSc|SINE|Alu	-2333	NR_125346	10309		NM_021147	ENSG00000152669	CCNO	CCNU|CILD29|UDG2	cyclin O	protein-coding
11423	chr1	89737921	89738450	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-82847	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
186327	chr5	134634971	134635130	+	0	NA	Intergenic	Intergenic	-2222	NM_001033503	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
194342	chr6	32868101	32868500	+	0	NA	Intergenic	Intergenic	14108	NM_002800	5698		NM_002800	ENSG00000240065	PSMB9	LMP2|PRAAS3|PRAAS6|PSMB6i|RING12|beta1i	proteasome 20S subunit beta 9	protein-coding
161095	chr3	38150971	38151330	+	0	NA	Intergenic	Intergenic	11399	NR_164663	4615		NM_002468	ENSG00000172936	MYD88	IMD68|MYD88D|WM1	MYD88 innate immune signal transduction adaptor	protein-coding
8226	chr1	39687021	39687700	+	0	NA	intron (NM_016257, intron 1 of 3)	intron (NM_016257, intron 1 of 3)	4073	NM_016257	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
32258	chr10	102020801	102021230	+	0	NA	intron (NM_024541, intron 8 of 25)	Tigger3b|DNA|TcMar-Tigger	35158	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
83185	chr16	23486851	23486950	+	0	NA	intron (NM_015044, intron 6 of 16)	MIRb|SINE|MIR	23594	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
151548	chr21	46542801	46543000	+	0	NA	intron (NM_206891, intron 18 of 19)	intron (NM_206891, intron 18 of 19)	62182	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
9955	chr1	54766721	54766980	+	0	NA	Intergenic	Intergenic	-2327	NM_152268	25973		NM_152268	ENSG00000162396	PARS2	DEE75|EIEE75|MT-PRORS|proRS	prolyl-tRNA synthetase 2, mitochondrial	protein-coding
192522	chr6	25035201	25036780	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	6298	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
165264	chr3	75429471	75430150	+	0	NA	intron (NR_024241, intron 3 of 7)	intron (NR_024241, intron 3 of 7)	5305	NR_024241	692099		NR_024241	ENSG00000291223	FAM86DP	FAM86D	family with sequence similarity 86 member D, pseudogene	pseudo
148302	chr20	63728301	63729150	+	0	NA	intron (NM_181485, intron 2 of 6)	L1M4a1|LINE|L1	-6976	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
3031	chr1	12134101	12134300	+	0	NA	intron (NM_001281430, intron 11 of 13)	intron (NM_001281430, intron 11 of 13)	-32743	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
159573	chr3	14957851	14958150	+	0	NA	intron (NM_003298, intron 1 of 14)	L2b|LINE|L2	-9559	NR_046251	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
156770	chr22	41873071	41874180	+	0	NA	intron (NR_103834, intron 4 of 21)	AmnSINE1|SINE|5S-Deu-L2	-27319	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
41776	chr11	66842751	66844230	+	0	NA	promoter-TSS (NM_005133)	promoter-TSS (NM_005133)	49	NM_001032279	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
105112	chr17	82208701	82209400	+	0	NA	intron (NM_001316321, intron 1 of 14)	intron (NM_001316321, intron 1 of 14)	3792	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
44741	chr11	111944151	111944650	+	0	NA	intron (NM_001037954, intron 1 of 19)	intron (NM_001037954, intron 1 of 19)	7057	NM_001037954	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
51907	chr12	53628321	53628580	+	0	NA	Intergenic	AluSc|SINE|Alu	-2035	NM_001206682	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
40078	chr11	62773971	62774980	+	0	NA	intron (NM_006473, intron 1 of 10)	L2b|LINE|L2	3079	NM_006473	10629		NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
8599	chr1	41525771	41525930	+	0	NA	intron (NM_001127714, intron 4 of 7)	intron (NM_001127714, intron 4 of 7)	-41167	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
19657	chr1	180478201	180478630	+	0	NA	intron (NM_032360, intron 3 of 7)	intron (NM_032360, intron 3 of 7)	24162	NM_032360	84320		NM_032360	ENSG00000230124	ACBD6	NEDPM	acyl-CoA binding domain containing 6	protein-coding
10548	chr1	66995921	66996400	+	0	NA	Intergenic	Intergenic	57988	NM_015139	23169		NM_015139	ENSG00000116704	SLC35D1	SHNKND|UGTREL7	solute carrier family 35 member D1	protein-coding
223175	chr8	143552821	143554380	+	0	NA	5' UTR (NM_001166237, exon 1 of 14).2	5' UTR (NM_001166237, exon 1 of 14).2	213	NM_001166237	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
23939	chr1	235107151	235107250	+	0	NA	Intergenic	Intergenic	20737	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
85417	chr16	50321451	50321750	+	0	NA	intron (NM_001173984, intron 13 of 16)	intron (NM_001173984, intron 13 of 16)	28984	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
105728	chr18	2727051	2727350	+	0	NA	intron (NM_015295, intron 22 of 47)	intron (NM_015295, intron 22 of 47)	71474	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
45841	chr11	119378971	119379480	+	0	NA	intron (NM_004205, intron 1 of 12)	intron (NM_004205, intron 1 of 12)	2465	NM_004205	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
41849	chr11	67135121	67135200	+	0	NA	intron (NM_012308, intron 2 of 20)	AluSp|SINE|Alu	15897	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
237776	chrX	129773911	129774400	+	0	NA	Intergenic	Intergenic	-5794	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
132524	chr2	106141151	106141450	+	0	NA	intron (NR_165308, intron 6 of 14)	L1MC5a|LINE|L1	-2419	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
26622	chr10	22367601	22367950	+	0	NA	intron (NM_172242, intron 3 of 9)	intron (NM_172242, intron 3 of 9)	22279	NM_012443	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
200844	chr6	138287201	138287480	+	0	NA	intron (NM_020340, intron 17 of 33)	intron (NM_020340, intron 17 of 33)	-68850	NM_021635	59351		NM_021635	ENSG00000254440	PBOV1	UC28|UROC28|dJ171N11.2	prostate and breast cancer overexpressed 1	protein-coding
157302	chr22	44460771	44460950	+	0	NA	Intergenic	L2b|LINE|L2	17533	NR_109966	101927526		NR_109966	ENSG00000232655	LINC01656	-	long intergenic non-protein coding RNA 1656	ncRNA
115253	chr19	14531821	14532080	+	0	NA	intron (NM_138501, intron 1 of 12)	AluJb|SINE|Alu	2356	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
81350	chr16	4799871	4800030	+	0	NA	intron (NR_046480, intron 4 of 9)	intron (NR_046480, intron 4 of 9)	2683	NM_024589	79641		NM_024589	ENSG00000067836	ROGDI	KTZS|RAV2|ROGD1	rogdi atypical leucine zipper	protein-coding
134344	chr2	136121501	136122030	+	0	NA	Intergenic	Intergenic	-3616	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
23288	chr1	228037571	228038150	+	0	NA	intron (NM_033131, intron 2 of 3)	CpG	30862	NM_033131	89780		NM_033131	ENSG00000154342	WNT3A	-	Wnt family member 3A	protein-coding
232988	chr9	136986921	136987480	+	0	NA	Intergenic	Intergenic	4207	NM_207510	401562		NM_207510	ENSG00000214402	LCNL1	-	lipocalin like 1	protein-coding
5019	chr1	24489171	24489550	+	0	NA	Intergenic	Intergenic	-12984	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
175205	chr4	56653201	56654080	+	0	NA	intron (NM_001145460, intron 3 of 4)	intron (NM_001145460, intron 3 of 4)	2882	NM_139211	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
229531	chr9	122832521	122833030	+	0	NA	Intergenic	AluSg|SINE|Alu	-4187	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
48516	chr12	9948551	9949030	+	0	NA	non-coding (NR_135047, exon 3 of 3)	non-coding (NR_135047, exon 3 of 3)	-2478	NM_001207010	160364		NM_138337	ENSG00000172322	CLEC12A	CD371|CLL-1|CLL1|DCAL-2|MICL	C-type lectin domain family 12 member A	protein-coding
59130	chr13	21399801	21400450	+	0	NA	intron (NM_153251, intron 7 of 11)	intron (NM_153251, intron 7 of 11)	-55266	NR_103841	100652865		NR_103840	ENSG00000224429	LINC00539	LINC00422	long intergenic non-protein coding RNA 539	ncRNA
109350	chr19	618401	618600	+	0	NA	exon (NM_005035, exon 17 of 21)	exon (NM_005035, exon 17 of 21)	15037	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
78817	chr15	99614971	99615130	+	0	NA	intron (NM_001352615, intron 3 of 12)	L2c|LINE|L2	-17928	NM_001130928	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
229816	chr9	125647571	125647750	+	0	NA	intron (NM_024117, intron 4 of 10)	intron (NM_024117, intron 4 of 10)	59548	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
45148	chr11	117200471	117200830	+	0	NA	intron (NR_045215, intron 1 of 7)	intron (NR_045215, intron 1 of 7)	1264	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
214071	chr7	143397201	143397400	+	0	NA	intron (NM_005232, intron 10 of 17)	intron (NM_005232, intron 10 of 17)	-10513	NR_033897	285965		NR_033897	ENSG00000229153	EPHA1-AS1	-	EPHA1 antisense RNA 1	ncRNA
189746	chr5	176598151	176598450	+	0	NA	exon (NM_052899, exon 2 of 2)	exon (NM_052899, exon 2 of 2)	11856	NM_052899	114787		NM_052899	ENSG00000169258	GPRIN1	GRIN1	G protein regulated inducer of neurite outgrowth 1	protein-coding
104570	chr17	81364801	81365230	+	0	NA	Intergenic	Intergenic	20110	NR_164138	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
122268	chr19	49058771	49059200	+	0	NA	Intergenic	Intergenic	-1236	NM_001385261	94027		NM_033142	ENSG00000196337	CGB7	CG-beta-a|CGB6	chorionic gonadotropin subunit beta 7	protein-coding
15533	chr1	150529021	150529850	+	0	NA	Intergenic	Intergenic	13678	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
198439	chr6	106105071	106105730	+	0	NA	exon (NM_001198, exon 5 of 7)	exon (NM_001198, exon 5 of 7)	6459	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
150351	chr21	42162651	42162750	+	0	NA	Intergenic	Intergenic	-36989	NM_207627	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
208558	chr7	71752171	71752330	+	0	NA	Intergenic	Intergenic	-444480	NR_037477	100500836		NR_037477	ENSG00000265878	MIR3914-1	-	microRNA 3914-1	ncRNA
22247	chr1	212614901	212615730	+	0	NA	intron (NM_001206484, intron 3 of 4)	L2a|LINE|L2	297	NM_001206486	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
78034	chr15	90005121	90005650	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	-1370	NR_036135	100422841		NR_036135	ENSG00000265871	MIR3174	-	microRNA 3174	ncRNA
96626	chr17	40576101	40576750	+	0	NA	Intergenic	Intergenic	-10953	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
46765	chr11	129846421	129847080	+	0	NA	intron (NM_001331210, intron 2 of 6)	L2a|LINE|L2	30902	NM_138788	120224		NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
216930	chr8	22739571	22739730	+	0	NA	intron (NM_001363233, intron 4 of 6)	intron (NM_001363233, intron 4 of 6)	-46170	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
28649	chr10	59883371	59883530	+	0	NA	intron (NM_005436, intron 1 of 8)	intron (NM_005436, intron 1 of 8)	23106	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
234023	chrX	3712891	3714500	+	0	NA	promoter-TSS (NM_005044)	promoter-TSS (NM_005044)	-46	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
156129	chr22	40111121	40111580	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	66533	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
169065	chr3	153290151	153290680	+	0	NA	Intergenic	Intergenic	128189	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
235425	chrX	45793401	45793600	+	0	NA	Intergenic	L1MEf|LINE|L1	-46376	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
9714	chr1	53125921	53126380	+	0	NA	intron (NM_001287595, intron 2 of 10)	MamRep137|DNA|TcMar-Tigger	16488	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
65268	chr14	49979301	49979780	+	0	NA	Intergenic	Intergenic	13141	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
16366	chr1	154342821	154343980	+	0	NA	intron (NM_001367934, intron 15 of 26)	intron (NM_001367934, intron 15 of 26)	14602	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
14489	chr1	144542351	144542650	+	0	NA	Intergenic	AluSz|SINE|Alu	9443	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
227926	chr9	94311601	94311800	+	0	NA	Intergenic	L1MB2|LINE|L1	16944	NM_017561	54754		NM_017561	ENSG00000130950	NUTM2F	FAM22F|NUTMF	NUT family member 2F	protein-coding
230545	chr9	128399301	128399500	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluSx1|SINE|Alu	-6686	NR_029837	407003		NR_029837	ENSG00000284185	MIR219A2	MIR219-2|MIRN219-2|hsa-mir-219a-2|mir-219a-2	microRNA 219a-2	ncRNA
144998	chr20	37522451	37523550	+	0	NA	3' UTR (NM_005386, exon 3 of 3)	3' UTR (NM_005386, exon 3 of 3)	1453	NM_001167823	10904		NM_006698	ENSG00000166619	BLCAP	BC10	BLCAP apoptosis inducing factor	protein-coding
46790	chr11	130118601	130119400	+	0	NA	intron (NM_001382546, intron 3 of 13)	intron (NM_001382546, intron 3 of 13)	-40782	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
140350	chr2	232634871	232635030	+	0	NA	intron (NM_025202, intron 1 of 3)	intron (NM_025202, intron 1 of 3)	1346	NM_025202	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
40133	chr11	62835151	62836130	+	0	NA	intron (NR_161381, intron 5 of 10)	intron (NR_161381, intron 5 of 10)	3406	NR_135084	105369332		NR_135084	ENSG00000256690	STX5-DT	-	STX5 divergent transcript	ncRNA
102825	chr17	76461501	76462080	+	0	NA	intron (NM_001166579, intron 2 of 6)	ERV3-16A3_I-int|LTR|ERVL	-5813	NM_001088	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
104327	chr17	80959021	80959480	+	0	NA	intron (NM_020761, intron 29 of 33)	intron (NM_020761, intron 29 of 33)	11963	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
26275	chr10	14842171	14842530	+	0	NA	exon (NM_001378785, exon 4 of 5)	exon (NM_001378785, exon 4 of 5)	4044	NM_001378785	100421372		NM_001378785	ENSG00000284024	MSANTD7	-	Myb/SANT DNA binding domain containing 7	protein-coding
234329	chrX	14033251	14033350	+	0	NA	Intergenic	LTR86B1|LTR|ERVL	-3408	NM_001042479	54960		NM_017856	ENSG00000046647	GEMIN8	FAM51A1	gem nuclear organelle associated protein 8	protein-coding
116914	chr19	18789901	18790300	+	0	NA	exon (NM_000095, exon 4 of 19)	exon (NM_000095, exon 4 of 19)	1205	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
156994	chr22	42506801	42507000	+	0	NA	intron (NR_027786, intron 7 of 10)	L2|LINE|L2	6321	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
122296	chr19	49102871	49103130	+	0	NA	intron (NM_003089, intron 7 of 9)	intron (NM_003089, intron 7 of 9)	-11370	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
27326	chr10	30527521	30528350	+	0	NA	Intergenic	Intergenic	93289	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
186276	chr5	134539021	134539280	+	0	NA	intron (NM_001289985, intron 3 of 11)	AluY|SINE|Alu	13042	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
104243	chr17	80720711	80721530	+	0	NA	intron (NM_020761, intron 4 of 33)	intron (NM_020761, intron 4 of 33)	84512	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
173478	chr4	9123521	9123850	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-49488	NM_001358418	100287045		NM_001358418	ENSG00000229924	FAM90A26	FAM90A26P	family with sequence similarity 90 member A26	protein-coding
150678	chr21	43603951	43604250	+	0	NA	intron (NM_007031, intron 7 of 8)	intron (NM_007031, intron 7 of 8)	5889	NR_106718	102464825		NR_106718	ENSG00000278433	MIR6070	hsa-mir-6070	microRNA 6070	ncRNA
126611	chr2	28791101	28791530	+	0	NA	intron (NM_206876, intron 7 of 8)	intron (NM_206876, intron 7 of 8)	-19519	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
159546	chr3	14602801	14603100	+	0	NA	Intergenic	CpG	-48796	NR_135523	51244		NM_016474	ENSG00000154781	CCDC174	C3orf19|HSPC212|IHPM|IHPMR|ctr1	coiled-coil domain containing 174	protein-coding
113272	chr19	8520971	8521800	+	0	NA	3' UTR (NM_001348355, exon 28 of 28)	3' UTR (NM_001348355, exon 28 of 28)	-7218	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
147919	chr20	62907221	62908230	+	0	NA	intron (NM_001193369, intron 4 of 15)	MLT1E1A|LTR|ERVL-MaLR	18780	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
102547	chr17	75838821	75839080	+	0	NA	intron (NM_199242, intron 12 of 31)	AluYk2|SINE|Alu	5454	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
232549	chr9	136348701	136349100	+	0	NA	intron (NM_001145638, intron 10 of 13)	intron (NM_001145638, intron 10 of 13)	-4157	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
24656	chr1	246931171	246933150	+	0	NA	promoter-TSS (NM_015446)	promoter-TSS (NM_015446)	-212	NM_001323342	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
224638	chr9	20614621	20615280	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	6988	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
100829	chr17	64108001	64108730	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	21779	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
42602	chr11	72091001	72091650	+	0	NA	intron (NR_026886, intron 4 of 6)	intron (NR_026886, intron 4 of 6)	10475	NM_001318803	120356739		NM_145309	ENSG00000184154	LRRC51	-	leucine rich repeat containing 51	protein-coding
230827	chr9	129062821	129063080	+	0	NA	intron (NR_138422, intron 9 of 13)	intron (NR_138422, intron 9 of 13)	-18161	NM_020438	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
144966	chr20	37189601	37190830	+	0	NA	intron (NM_001324306, intron 2 of 15)	intron (NM_001324306, intron 2 of 15)	-10667	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
86033	chr16	57539131	57539780	+	0	NA	Intergenic	AluJo|SINE|Alu	-2884	NM_033212	92922		NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
176715	chr4	101258671	101259180	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	-18053	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
77411	chr15	83248371	83248680	+	0	NA	Intergenic	Intergenic	34932	NM_001301206	646		NM_001717	ENSG00000169594	BNC1	BNC|BSN1|HsT19447|POF16|bn1	basonuclin zinc finger protein 1	protein-coding
163375	chr3	50483271	50483430	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	20284	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
210046	chr7	94656901	94657210	+	0	NA	promoter-TSS (NM_001362808)	promoter-TSS (NM_001362808)	685	NM_001040152	23089		NM_015068	ENSG00000242265	PEG10	EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1	paternally expressed 10	protein-coding
87546	chr16	71915551	71915850	+	0	NA	exon (NM_001270977, exon 2 of 9)	exon (NM_001270977, exon 2 of 9)	20169	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
37221	chr11	14435501	14436000	+	0	NA	Intergenic	Intergenic	64061	NM_001144061	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
83744	chr16	28649121	28649580	+	0	NA	intron (NM_001310136, intron 2 of 6)	intron (NM_001310136, intron 2 of 6)	10989	NM_001310136	728734		NM_001310136	ENSG00000255524	NPIPB8	-	nuclear pore complex interacting protein family member B8	protein-coding
163840	chr3	52471871	52472430	+	0	NA	intron (NM_001276294, intron 5 of 13)	intron (NM_001276294, intron 5 of 13)	16546	NM_001276294	11188		NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
80331	chr16	2459121	2460370	+	0	NA	promoter-TSS (NM_025108)	promoter-TSS (NM_025108)	-364	NM_025108	80178		NM_025108	ENSG00000162062	TEDC2	C16orf59	tubulin epsilon and delta complex 2	protein-coding
89959	chr16	89782451	89782750	+	0	NA	intron (NM_001286167, intron 17 of 42)	intron (NM_001286167, intron 17 of 42)	34047	NM_001286167	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
125239	chr2	10386871	10387430	+	0	NA	intron (NM_001258359, intron 1 of 4)	intron (NM_001258359, intron 1 of 4)	18386	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
97322	chr17	43252951	43253650	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1281	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
107592	chr18	48869901	48870730	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	72492	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
17662	chr1	157598101	157598400	+	0	NA	promoter-TSS (NM_031282)	promoter-TSS (NM_031282)	-165	NM_031282	83417		NM_031282	ENSG00000163518	FCRL4	CD307d|FCRH4|IGFP2|IRTA1	Fc receptor like 4	protein-coding
63839	chr14	21508551	21508850	+	0	NA	intron (NM_019852, intron 1 of 10)	AluSp|SINE|Alu	2640	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
62359	chr13	99209371	99210130	+	0	NA	intron (NR_026644, intron 1 of 8)	AluSx1|SINE|Alu	8896	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
52216	chr12	54381821	54382080	+	0	NA	intron (NM_001290002, intron 3 of 8)	L2b|LINE|L2	2783	NM_001290001	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
190191	chr5	178207971	178208130	+	0	NA	TTS (NR_103510)	TTS (NR_103510)	3517	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
30285	chr10	75214671	75215030	+	0	NA	intron (NM_003375, intron 5 of 10)	intron (NM_003375, intron 5 of 10)	4696	NM_001184783	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
92789	chr17	15914451	15915150	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	-30117	NM_000676	136		NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
66693	chr14	64195121	64195980	+	0	NA	intron (NM_015180, intron 99 of 114)	intron (NM_015180, intron 99 of 114)	-18594	NM_182913	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
94652	chr17	30173671	30173840	+	0	NA	intron (NM_032141, intron 3 of 6)	MIR|SINE|MIR	-56595	NR_036149	100423003		NR_036149	ENSG00000284399	MIR3184	-	microRNA 3184	ncRNA
149829	chr21	35025871	35026030	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	13476	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
71962	chr15	24772921	24773380	+	0	NA	Intergenic	CpG	-50458	NR_146177	104472715		NR_146177		SNHG14	115HG|IC-SNURF-SNRPN|LNCAT|NCRNA00214|U-UBE3A-ATS|UBE3A-AS|UBE3A-AS1|UBE3A-ATS|UBE3AATS	small nucleolar RNA host gene 14	ncRNA
194199	chr6	32166951	32167250	+	0	NA	non-coding (NR_037860, exon 6 of 9).3	non-coding (NR_037860, exon 6 of 9).3	2505	NM_030652	80864		NM_030652	ENSG00000241404	EGFL8	C6orf8|NG3	EGF like domain multiple 8	protein-coding
51937	chr12	53736271	53736430	+	0	NA	Intergenic	Intergenic	-8898	NM_001143682	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
128791	chr2	62305701	62306300	+	0	NA	Intergenic	Intergenic	90479	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
102792	chr17	76381301	76382180	+	0	NA	Intergenic	AluSp|SINE|Alu	-1464	NM_001355139	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
148002	chr20	63032301	63032500	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	4628	NR_028295	100144596		NM_022099		LINC00029	C20orf51|NCRNA00029	long intergenic non-protein coding RNA 29	ncRNA
218143	chr8	41767751	41768050	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	29722	NM_000037	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
167403	chr3	128993551	128994530	+	0	NA	promoter-TSS (NM_020741)	promoter-TSS (NM_020741)	36	NM_020741	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
196507	chr6	43671251	43671350	+	0	NA	TTS (NM_001193341)	TTS (NM_001193341)	16491	NM_018135	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
62157	chr13	97221751	97222550	+	0	NA	promoter-TSS (NM_001382684)	promoter-TSS (NM_001382684)	-183	NM_001382684	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
12373	chr1	101254101	101254530	+	0	NA	Intergenic	Intergenic	17296	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
161395	chr3	41212421	41213180	+	0	NA	intron (NM_001098210, intron 1 of 15)	L2a|LINE|L2	13295	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
194042	chr6	31844721	31845230	+	0	NA	Intergenic	Intergenic	7899	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
186027	chr5	134001121	134001380	+	0	NA	intron (NM_003374, intron 1 of 8)	MIRb|SINE|MIR	3518	NR_036624								
182302	chr5	58457051	58457350	+	0	NA	exon (NM_006622, exon 7 of 14)	exon (NM_006622, exon 7 of 14)	2886	NM_006622	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
144612	chr20	35833871	35834230	+	0	NA	intron (NM_016436, intron 2 of 17)	AluSg|SINE|Alu	62035	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
59883	chr13	30677901	30678500	+	0	NA	Intergenic	L1MA9|LINE|L1	-35278	NM_001204406	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
77150	chr15	79926121	79926680	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2648	NR_037653	400410		NM_001100879	ENSG00000180953	ST20	HCCS-1	suppressor of tumorigenicity 20	ncRNA
90017	chr16	89892051	89892550	+	0	NA	intron (NM_014972, intron 6 of 17)	intron (NM_014972, intron 6 of 17)	18708	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
183664	chr5	80399501	80399800	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-8414	NR_146174	9765		NM_014733	ENSG00000039319	ZFYVE16	PPP1R69	zinc finger FYVE-type containing 16	protein-coding
38074	chr11	35192101	35192730	+	0	NA	intron (NM_001202556, intron 5 of 7)	intron (NM_001202556, intron 5 of 7)	29465	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
93102	chr17	17669601	17669830	+	0	NA	Intergenic	(CTCCCA)n|Simple_repeat|Simple_repeat	7973	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
7681	chr1	35806671	35807100	+	0	NA	promoter-TSS (NR_146062)	promoter-TSS (NR_146062)	-751	NR_146062	192670		NM_017629	ENSG00000134698	AGO4	EIF2C4	argonaute RISC component 4	protein-coding
189779	chr5	176662321	176662580	+	0	NA	Intergenic	Intergenic	14966	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
12425	chr1	101506601	101507030	+	0	NA	Intergenic	Intergenic	182978	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
128460	chr2	55621721	55622250	+	0	NA	Intergenic	LTR28C|LTR|ERV1	-4363	NM_001282850	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
111292	chr19	3575351	3575680	+	0	NA	intron (NM_006339, intron 4 of 9)	intron (NM_006339, intron 4 of 9)	2571	NM_006339	10362		NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
151212	chr21	45207751	45208050	+	0	NA	intron (NR_073200, intron 10 of 12)	intron (NR_073200, intron 10 of 12)	-26440	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
90834	chr17	2305871	2306630	+	0	NA	intron (NM_001304803, intron 1 of 6)	AluSx1|SINE|Alu	2300	NM_021947	63826		NM_021947	ENSG00000167720	SRR	ILV1|ISO1	serine racemase	protein-coding
60570	chr13	41587571	41587800	+	0	NA	intron (NM_015058, intron 41 of 44)	intron (NM_015058, intron 41 of 44)	-19290	NR_049803	100847026		NR_049803	ENSG00000284584	MIR5006	-	microRNA 5006	ncRNA
7212	chr1	32296171	32296630	+	0	NA	intron (NM_004964, intron 1 of 13)	AluJb|SINE|Alu	4317	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
222407	chr8	134332621	134333780	+	0	NA	Intergenic	L2b|LINE|L2	-264871	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
68768	chr14	91078051	91078980	+	0	NA	intron (NM_001358312, intron 1 of 13)	intron (NM_001358312, intron 1 of 13)	-17866	NM_182398	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
104821	chr17	81810701	81811750	+	0	NA	exon (NM_000160, exon 6 of 14)	exon (NM_000160, exon 6 of 14)	7075	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
151983	chr22	19166321	19166780	+	0	NA	Intergenic	AluSq4|SINE|Alu	-5156	NR_103767	100652736		NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
41413	chr11	66047571	66048130	+	0	NA	intron (NM_033036, intron 1 of 2)	L3|LINE|CR1	1311	NM_033036	89792		NM_033036	ENSG00000175229	GAL3ST3	GAL3ST-3|GAL3ST2	galactose-3-O-sulfotransferase 3	protein-coding
26755	chr10	22707401	22707830	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	6493	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
133842	chr2	128196951	128197280	+	0	NA	Intergenic	Intergenic	105915	NR_027671	56886		NM_020120	ENSG00000136731	UGGT1	HUGT1|UGCGL1|UGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding
68539	chr14	89250471	89250830	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	166583	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
117358	chr19	19549701	19550680	+	0	NA	Intergenic	Intergenic	11925	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
179304	chr4	177385751	177385850	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	56637	NM_000027	175		NM_000027	ENSG00000038002	AGA	AGU|ASRG|GA	aspartylglucosaminidase	protein-coding
40880	chr11	65116401	65118300	+	0	NA	exon (NM_014205, exon 1 of 1)	exon (NM_014205, exon 1 of 1)	351	NM_014205	741		NM_014205	ENSG00000174276	ZNHIT2	C11orf5|FON	zinc finger HIT-type containing 2	protein-coding
158282	chr22	50348621	50349450	+	0	NA	intron (NM_001351641, intron 1 of 23)	AluSq2|SINE|Alu	5708	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
107747	chr18	50286911	50288480	+	0	NA	5' UTR (NM_014593, exon 1 of 15)	5' UTR (NM_014593, exon 1 of 15)	627	NM_014593	30827		NM_014593	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
178695	chr4	152540201	152541350	+	0	NA	Intergenic	MER52D|LTR|ERV1	4347	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
171498	chr3	196613651	196613950	+	0	NA	Intergenic	AluSx|SINE|Alu	18787	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
212075	chr7	115017621	115017880	+	0	NA	3' UTR (NM_001166345, exon 5 of 5)	3' UTR (NM_001166345, exon 5 of 5)	-61208	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
183763	chr5	81725771	81726130	+	0	NA	intron (NM_001256733, intron 1 of 15)	intron (NM_001256733, intron 1 of 15)	25303	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
237749	chrX	129637251	129637900	+	0	NA	Intergenic	Intergenic	17381	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
230321	chr9	127969871	127972330	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	9889	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
59721	chr13	29806551	29806650	+	0	NA	intron (NM_007106, intron 1 of 4)	intron (NM_007106, intron 1 of 4)	44017	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
225809	chr9	37594371	37595000	+	0	NA	Intergenic	MIR3|SINE|MIR	-2046	NM_001134484	401505		NM_001001790	ENSG00000175768	TOMM5	C9orf105|Tom5|bA613M10.3	translocase of outer mitochondrial membrane 5	protein-coding
23106	chr1	226674501	226675600	+	0	NA	promoter-TSS (NR_103784)	promoter-TSS (NR_103784)	18	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
210373	chr7	99616071	99617680	+	0	NA	promoter-TSS (NM_001350979)	promoter-TSS (NM_001350979)	-71	NM_001350982	221785		NM_145115	ENSG00000197037	ZSCAN25	ZNF498	zinc finger and SCAN domain containing 25	protein-coding
51455	chr12	52049651	52049750	+	0	NA	intron (NM_001202233, intron 2 of 7)	intron (NM_001202233, intron 2 of 7)	-1702	NM_002135	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
94917	chr17	31906601	31906800	+	0	NA	Intergenic	AluSx|SINE|Alu	-4992	NM_018428	55813		NM_018428	ENSG00000108651	UTP6	C17orf40|HCA66	UTP6 small subunit processome component	protein-coding
236159	chrX	64205071	64206580	+	0	NA	promoter-TSS (NM_152424)	promoter-TSS (NM_152424)	-117	NM_152424	139285		NM_152424	ENSG00000184675	AMER1	FAM123B|OSCS|WTX	APC membrane recruitment protein 1	protein-coding
154053	chr22	30596671	30597030	+	0	NA	intron (NM_001282327, intron 2 of 16)	LTR12C|LTR|ERV1	-4940	NM_014303	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
118993	chr19	38885771	38886130	+	0	NA	intron (NR_034146, intron 6 of 13)	intron (NR_034146, intron 6 of 13)	-7675	NM_001195833	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
106157	chr18	9917771	9918130	+	0	NA	intron (NM_194434, intron 1 of 5)	intron (NM_194434, intron 1 of 5)	3934	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
179031	chr4	165206801	165208370	+	0	NA	promoter-TSS (NM_001331024)	promoter-TSS (NM_001331024)	24	NM_007246	11275		NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding
158913	chr3	10007201	10007830	+	0	NA	TTS (NR_103821)	TTS (NR_103821)	3603	NR_148535	55831		NM_018447	ENSG00000125037	EMC3	POB|TMEM111	ER membrane protein complex subunit 3	protein-coding
127038	chr2	37168321	37168600	+	0	NA	intron (NM_001032377, intron 8 of 8)	intron (NM_001032377, intron 8 of 8)	-11413	NM_002759	5610		NM_002759	ENSG00000055332	EIF2AK2	DYT33|EIF2AK1|LEUDEN|PKR|PPP1R83|PRKR	eukaryotic translation initiation factor 2 alpha kinase 2	protein-coding
155455	chr22	38475201	38475800	+	0	NA	intron (NM_006855, intron 2 of 4)	intron (NM_006855, intron 2 of 4)	7404	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
9449	chr1	50332901	50333230	+	0	NA	Intergenic	CpG	90378	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
67685	chr14	73172921	73173500	+	0	NA	intron (NM_007318, intron 4 of 11)	intron (NM_007318, intron 4 of 11)	36703	NM_007318	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
153563	chr22	26648951	26649550	+	0	NA	Intergenic	MIRb|SINE|MIR	-8232	NR_033321	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
117671	chr19	24057201	24057600	+	0	NA	intron (NM_001278677, intron 3 of 5)	BSR/Beta|Satellite|Satellite	23951	NM_001278663	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
51306	chr12	51266921	51267380	+	0	NA	intron (NM_001031628, intron 2 of 3)	intron (NM_001031628, intron 2 of 3)	3060	NM_001033873	57228		NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
121945	chr19	48465821	48466430	+	0	NA	3' UTR (NM_013348, exon 3 of 3)	3' UTR (NM_013348, exon 3 of 3)	-3083	NM_017457	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
30496	chr10	79290071	79290630	+	0	NA	intron (NM_020338, intron 9 of 24)	intron (NM_020338, intron 9 of 24)	-57119	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
19912	chr1	184161301	184161580	+	0	NA	Intergenic	Intergenic	109710	NR_125335	116461		NM_052965	ENSG00000198860	TSEN15	C1orf19|PCH2F|sen15	tRNA splicing endonuclease subunit 15	protein-coding
97092	chr17	42420721	42421150	+	0	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	2321	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
137623	chr2	197324721	197325350	+	0	NA	Intergenic	Intergenic	-14255	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
54942	chr12	96227121	96227380	+	0	NA	intron (NM_005230, intron 2 of 4)	intron (NM_005230, intron 2 of 4)	-28248	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
150857	chr21	44082351	44082770	+	0	NA	intron (NM_003274, intron 13 of 22)	intron (NM_003274, intron 13 of 22)	8236	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
201432	chr6	147206771	147207330	+	0	NA	intron (NM_139244, intron 2 of 25)	intron (NM_139244, intron 2 of 25)	-2436	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
171466	chr3	196423201	196423400	+	0	NA	intron (NM_015562, intron 1 of 10)	intron (NM_015562, intron 1 of 10)	-8085	NR_046745	100874034		NR_046745		UBXN7-AS1	-	UBXN7 antisense RNA 1	ncRNA
60621	chr13	42276551	42277200	+	0	NA	intron (NM_016248, intron 1 of 12)	intron (NM_016248, intron 1 of 12)	4723	NM_016248	11215		NM_016248	ENSG00000023516	AKAP11	AKAP-11|AKAP220|PPP1R44|PRKA11	A-kinase anchoring protein 11	protein-coding
154359	chr22	33049171	33049330	+	0	NA	intron (NM_001135774, intron 1 of 13)	intron (NM_001135774, intron 1 of 13)	3294	NM_001369908	8224		NM_003490	ENSG00000185666	SYN3	-	synapsin III	protein-coding
111127	chr19	3249401	3250000	+	0	NA	intron (NR_033342, intron 1 of 12)	intron (NR_033342, intron 1 of 12)	24422	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
209423	chr7	76356671	76357030	+	0	NA	intron (NM_012479, intron 1 of 1)	intron (NM_012479, intron 1 of 1)	2141	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
127974	chr2	46747301	46747600	+	0	NA	intron (NM_144949, intron 1 of 1)	AluJb|SINE|Alu	48155	NM_144949	9655		NM_014011	ENSG00000171150	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
195260	chr6	36437351	36437850	+	0	NA	intron (NM_152990, intron 2 of 4)	AluY|SINE|Alu	-5167	NM_001286580	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
5980	chr1	26958771	26959130	+	0	NA	intron (NM_152365, intron 1 of 3)	intron (NM_152365, intron 1 of 3)	1518	NM_152365	126695		NM_152365	ENSG00000175707	KDF1	C1orf172|ECTD12	keratinocyte differentiation factor 1	protein-coding
125167	chr2	10043901	10045050	+	0	NA	intron (NM_001177718, intron 1 of 3)	CpG-15751	230	NM_001177718	8462		NM_003597	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	KLF transcription factor 11	protein-coding
210079	chr7	96709251	96710050	+	0	NA	intron (NR_163953, intron 1 of 5)	CpG	196	NR_163952	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
43816	chr11	86637871	86638230	+	0	NA	intron (NR_147828, intron 2 of 14)	intron (NR_147828, intron 2 of 14)	34148	NR_147831	10873		NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
96448	chr17	40213901	40214100	+	0	NA	Intergenic	AluSg|SINE|Alu	-5304	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
73517	chr15	43787821	43788180	+	0	NA	intron (NM_001199877, intron 2 of 4)	AluSz|SINE|Alu	-3976	NR_037672	10169		NM_005770	ENSG00000140264	SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
44666	chr11	110436071	110436230	+	0	NA	intron (NM_004109, intron 2 of 3)	intron (NM_004109, intron 2 of 3)	6202	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
94725	chr17	30728551	30729130	+	0	NA	intron (NR_144394, intron 1 of 8)	intron (NR_144394, intron 1 of 8)	19232	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
72708	chr15	38650401	38650600	+	0	NA	Intergenic	Intergenic	-46098	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
142856	chr20	17619621	17619880	+	0	NA	intron (NM_004587, intron 18 of 24)	intron (NM_004587, intron 18 of 24)	49675	NM_006870	11034		NM_006870	ENSG00000125868	DSTN	ACTDP|ADF|HEL32|bA462D18.2	destrin, actin depolymerizing factor	protein-coding
197118	chr6	57316351	57317100	+	0	NA	promoter-TSS (NM_001282487)	promoter-TSS (NM_001282487)	-905	NM_001282487	5558		NM_000947	ENSG00000146143	PRIM2	PRIM2A|p58	DNA primase subunit 2	protein-coding
220708	chr8	101888821	101889280	+	0	NA	intron (NM_001040626, intron 3 of 6)	intron (NM_001040626, intron 3 of 6)	-95382	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
232576	chr9	136376571	136376730	+	0	NA	intron (NM_003086, intron 21 of 22)	intron (NM_003086, intron 21 of 22)	-2981	NM_052813	64170		NM_022352	ENSG00000187796	CARD9	CANDF2|IMD103|hCARD9	caspase recruitment domain family member 9	protein-coding
137724	chr2	197707451	197708130	+	0	NA	3' UTR (NM_138395, exon 1 of 1)	3' UTR (NM_138395, exon 1 of 1)	2421	NM_138395	92935		NM_138395	ENSG00000247626	MARS2	COXPD25|MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
95687	chr17	38421321	38421780	+	0	NA	Intergenic	Intergenic	-6914	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
194924	chr6	34905151	34905250	+	0	NA	intron (NM_015245, intron 1 of 23)	intron (NM_015245, intron 1 of 23)	15945	NM_015245	23294		NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
159579	chr3	15054871	15055700	+	0	NA	intron (NR_135246, intron 2 of 4)	MSTA|LTR|ERVL-MaLR	10030	NR_135247	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
35054	chr11	596321	596730	+	0	NA	intron (NM_001286582, intron 6 of 17)	intron (NM_001286582, intron 6 of 17)	19425	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
27096	chr10	27467071	27467230	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-37154	NR_046172	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
50042	chr12	44015421	44015700	+	0	NA	intron (NM_001286212, intron 3 of 6)	intron (NM_001286212, intron 3 of 6)	179479	NM_032256	84216		NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
186249	chr5	134465421	134467280	+	0	NA	Intergenic	Intergenic	-31303	NR_105044	102546229		NR_105044		LINC02999	-	long intergenic non-protein coding RNA 2999	ncRNA
196886	chr6	52241951	52242050	+	0	NA	intron (NM_052872, intron 1 of 2)	intron (NM_052872, intron 1 of 2)	2500	NM_052872	112744		NM_052872	ENSG00000112116	IL17F	CANDF6|IL-17F|IL17A|ML-1|ML1	interleukin 17F	protein-coding
72342	chr15	31327701	31330500	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	2265	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
35542	chr11	1595421	1596130	+	0	NA	intron (NR_021489, intron 1 of 1).3	HAL1M8|LINE|L1	2519	NM_001004325	440021		NM_001004325	ENSG00000205867	KRTAP5-2	KRTAP5-8|KRTAP5.2	keratin associated protein 5-2	protein-coding
218392	chr8	46920301	46920500	+	0	NA	Intergenic	Intergenic	79514	NR_027012	497634		NR_027012	ENSG00000253314	LINC00293	BEYLA|NCRNA00293	long intergenic non-protein coding RNA 293	ncRNA
50554	chr12	48004121	48005580	+	0	NA	promoter-TSS (NM_001844)	promoter-TSS (NM_001844)	-374	NM_033150	1280		NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
221195	chr8	120740771	120741430	+	0	NA	intron (NM_021021, intron 1 of 6)	L3|LINE|CR1	-20153	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
1279	chr1	2322101	2322300	+	0	NA	intron (NM_024848, intron 13 of 13)	intron (NM_024848, intron 13 of 13)	30461	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
110972	chr19	2956401	2956850	+	0	NA	Intergenic	Intergenic	-11654	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
214893	chr7	151429451	151430800	+	0	NA	exon (NM_144727, exon 4 of 4)	exon (NM_144727, exon 4 of 4)	3514	NR_037468	100500835		NR_037468	ENSG00000265810	MIR3907	-	microRNA 3907	ncRNA
71495	chr14	106000301	106000550	+	0	NA	Intergenic	Intergenic	-28156	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
75809	chr15	69060671	69061430	+	0	NA	non-coding (NR_033672, exon 17 of 17)	non-coding (NR_033672, exon 17 of 17)	-19800	NR_026949	283673		NM_173610	ENSG00000212766	EWSAT1	LINC00277|NCRNA00277|TMEM84	Ewing sarcoma associated transcript 1	ncRNA
71801	chr15	21736501	21737650	+	0	NA	Intergenic	Intergenic	-1076	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
188286	chr5	151133471	151133630	+	0	NA	intron (NM_001193544, intron 7 of 24)	Tigger3a|DNA|TcMar-Tigger	8134	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
135663	chr2	168461271	168461430	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	5078	NM_001256126	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
177643	chr4	121218921	121219700	+	0	NA	intron (NM_001244764, intron 1 of 12)	intron (NM_001244764, intron 1 of 12)	-2683	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
93094	chr17	17662601	17664500	+	0	NA	Intergenic	Intergenic	14138	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
198849	chr6	109365501	109365900	+	0	NA	TTS (NM_006016)	TTS (NM_006016)	16039	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
45724	chr11	119101571	119103130	+	0	NA	promoter-TSS (NM_001382)	promoter-TSS (NM_001382)	-497	NM_001382	1798		NM_001382	ENSG00000172269	DPAGT1	ALG7|CDG-Ij|CDG1J|CMS13|CMSTA2|D11S366|DGPT|DPAGT|DPAGT2|G1PT|GPT|UAGT|UGAT	dolichyl-phosphate N-acetylglucosaminephosphotransferase 1	protein-coding
90140	chr17	125021	125280	+	0	NA	Intergenic	L1MC3|LINE|L1	-12419	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
8370	chr1	40341451	40341930	+	0	NA	Intergenic	MLT1D-int|LTR|ERVL-MaLR	-24404	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
121671	chr19	47501451	47502180	+	0	NA	TTS (NR_038452)	TTS (NR_038452)	13248	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
117945	chr19	33226751	33227200	+	0	NA	Intergenic	CpG	-1125	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
140307	chr2	232448371	232448730	+	0	NA	Intergenic	Intergenic	-7603	NM_001631	248		NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
216637	chr8	22111271	22111430	+	0	NA	Intergenic	Intergenic	-1931	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
71460	chr14	105862001	105862880	+	0	NA	Intergenic	Intergenic	-2887	NR_130466	100616422		NR_130466	ENSG00000264781	MIR4537	-	microRNA 4537	ncRNA
144809	chr20	36740271	36740430	+	0	NA	intron (NR_038370, intron 1 of 13)	AluSg|SINE|Alu	5740	NM_022477	57446		NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
209231	chr7	75738521	75741380	+	0	NA	Intergenic	Intergenic	-1009	NM_005338	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
181216	chr5	39173721	39174180	+	0	NA	intron (NM_199335, intron 2 of 17)	L1PA16|LINE|L1	45613	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
31033	chr10	88884571	88885330	+	0	NA	intron (NM_020799, intron 1 of 10)	MIR|SINE|MIR	4705	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
84345	chr16	30202251	30202750	+	0	NA	intron (NM_177552, intron 4 of 7).2	MIRb|SINE|MIR	3245	NM_001017390	445329		NM_001017389	ENSG00000213648	SULT1A4	HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|STM|TL-PST	sulfotransferase family 1A member 4	protein-coding
208921	chr7	74064301	74064900	+	0	NA	intron (NM_001278918, intron 25 of 27)	AluSx|SINE|Alu	-19204	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
71108	chr14	104893801	104894000	+	0	NA	intron (NM_001112726, intron 16 of 18)	intron (NM_001112726, intron 16 of 18)	28586	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
222922	chr8	142950051	142950550	+	0	NA	Intergenic	(GGT)n|Simple_repeat|Simple_repeat	-32457	NM_000498	1585		NM_000498	ENSG00000179142	CYP11B2	ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo	cytochrome P450 family 11 subfamily B member 2	protein-coding
197220	chr6	63764351	63764630	+	0	NA	intron (NM_001292009, intron 40 of 43)	intron (NM_001292009, intron 40 of 43)	-42346	NR_157848	112935969		NR_157848	ENSG00000236345	SCAT8	EYS-AS1	S-phase cancer associated transcript 8	ncRNA
56835	chr12	120234571	120235250	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	15253	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
32005	chr10	100988721	100988980	+	0	NA	exon (NM_021830, exon 1 of 5)	exon (NM_021830, exon 1 of 5)	1307	NM_001163813	56652		NM_021830	ENSG00000107815	TWNK	ATXN8|C10orf2|IOSCA|MTDPS7|PEO|PEO1|PEOA3|PRLTS5|SANDO|SCA8|TWINL	twinkle mtDNA helicase	protein-coding
127127	chr2	37659601	37660150	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	11767	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
111974	chr19	4865851	4865950	+	0	NA	intron (NM_005817, intron 1 of 7)	AluY|SINE|Alu	1767	NM_001164194	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
88409	chr16	84653901	84654100	+	0	NA	intron (NM_024731, intron 2 of 4)	intron (NM_024731, intron 2 of 4)	5489	NM_024731	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
193401	chr6	30417321	30417780	+	0	NA	Intergenic	Intergenic	-71959	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
51548	chr12	52507121	52507380	+	0	NA	Intergenic	L1MC1|LINE|L1	13144	NM_000424	3852		NM_000424	ENSG00000186081	KRT5	CK5|DDD|DDD1|EBS1|EBS2|EBS2A|EBS2B|EBS2C|EBS2D|EBS2E|EBS2F|K5|KRT5A	keratin 5	protein-coding
228258	chr9	98007351	98007600	+	0	NA	intron (NM_006401, intron 4 of 6)	Charlie3|DNA|hAT-Charlie	24134	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
176154	chr4	83216651	83216950	+	0	NA	Intergenic	AluSp|SINE|Alu	67998	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
152306	chr22	20334401	20334600	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-3530	NR_165637	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
124270	chr19	57771621	57772280	+	0	NA	intron (NM_001077426, intron 1 of 1)	AluSg|SINE|Alu	2274	NM_017652	54807		NM_017652	ENSG00000083828	ZNF586	-	zinc finger protein 586	protein-coding
154585	chr22	36274621	36275200	+	0	NA	Intergenic	HAL1|LINE|L1	11997	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
232772	chr9	136683751	136684450	+	0	NA	intron (NM_006412, intron 1 of 5)	intron (NM_006412, intron 1 of 5)	3357	NM_001012727	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
102568	chr17	75860471	75860630	+	0	NA	Intergenic	AluY|SINE|Alu	-4114	NM_001348170	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
194177	chr6	32114951	32115400	+	0	NA	TTS (NM_004381)	TTS (NM_004381)	-5837	NM_001365276	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
177744	chr4	122532771	122533130	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-76225	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
135764	chr2	169667601	169667800	+	0	NA	intron (NM_001085447, intron 4 of 8)	Tigger1|DNA|TcMar-Tigger	26705	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
187581	chr5	142819001	142819400	+	0	NA	intron (NM_001349547, intron 1 of 21)	MLT1O|LTR|ERVL-MaLR	47973	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
239309	chrY	17047001	17047200	+	0	NA	Intergenic	Intergenic	-453858	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
109307	chr19	574201	574580	+	0	NA	intron (NM_001322243, intron 1 of 7)	AluY|SINE|Alu	1794	NM_198589	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
200434	chr6	135020271	135020630	+	0	NA	intron (NM_001363686, intron 4 of 18)	intron (NM_001363686, intron 4 of 18)	34372	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
57190	chr12	121451951	121452400	+	0	NA	intron (NM_001005366, intron 13 of 22)	L1MB2|LINE|L1	-7823	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
35746	chr11	2135571	2135730	+	0	NA	intron (NM_001007139, intron 2 of 4)	intron (NM_001007139, intron 2 of 4)	-1441	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
217195	chr8	26324271	26324430	+	0	NA	intron (NM_002717, intron 2 of 9)	L2a|LINE|L2	31134	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
34779	chr11	211151	211950	+	0	NA	intron (NM_001286134, intron 5 of 9)	intron (NM_001286134, intron 5 of 9)	2214	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
186138	chr5	134158751	134158850	+	0	NA	intron (NM_170679, intron 4 of 5)	intron (NM_170679, intron 4 of 5)	18150	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
24525	chr1	244833371	244836280	+	0	NA	promoter-TSS (NM_001312871)	promoter-TSS (NM_001312871)	-481	NM_001312871	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
1119	chr1	2124161	2125380	+	0	NA	intron (NM_001033582, intron 1 of 14)	intron (NM_001033582, intron 1 of 14)	20054	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
970	chr1	1790001	1790400	+	0	NA	intron (NM_001282539, intron 8 of 10)	intron (NM_001282539, intron 8 of 10)	-10169	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
166862	chr3	123489401	123489700	+	0	NA	Intergenic	Intergenic	-40460	NM_183357	111		NM_183357	ENSG00000173175	ADCY5	AC5|DSKOD|FDFM	adenylate cyclase 5	protein-coding
189797	chr5	176816371	176816730	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	5991	NM_133369	90249		NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
171775	chr4	122701	122900	+	0	NA	Intergenic	AluY|SINE|Alu	-1676	NM_001289930	255403		NM_153691	ENSG00000250312	ZNF718	-	zinc finger protein 718	protein-coding
57165	chr12	121373821	121374350	+	0	NA	Intergenic	AluY|SINE|Alu	-19876	NM_001137559	51433		NM_016237	ENSG00000089053	ANAPC5	APC5	anaphase promoting complex subunit 5	protein-coding
225612	chr9	36192271	36192580	+	0	NA	intron (NM_001184762, intron 1 of 2)	intron (NM_001184762, intron 1 of 2)	1504	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
122029	chr19	48625921	48626530	+	0	NA	exon (NM_001204158, exon 3 of 7)	exon (NM_001204158, exon 3 of 7)	1196	NM_001204160	56848		NM_020126	ENSG00000063176	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding
150214	chr21	39443651	39444130	+	0	NA	intron (NM_001384299, intron 2 of 6)	AluSx|SINE|Alu	1888	NM_001384295	150082		NM_152505	ENSG00000157578	LCA5L	C21orf13	lebercilin LCA5 like	protein-coding
16876	chr1	155834651	155834950	+	0	NA	intron (NM_001282861, intron 2 of 20)	MER41B|LTR|ERV1	22414	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
70594	chr14	102774421	102775280	+	0	NA	Intergenic	Intergenic	-2599	NM_003300	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
110294	chr19	1832121	1833000	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	10471	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
147780	chr20	62562171	62562330	+	0	NA	intron (NM_178463, intron 2 of 3)	intron (NM_178463, intron 2 of 3)	-2662	NR_029676	406923		NR_029676	ENSG00000284508	MIR133A2	MIRN133A2|mir-133a-2	microRNA 133a-2	ncRNA
239003	chrX	156019601	156020160	+	0	NA	Intergenic	(GGGTCA)n|Simple_repeat|Simple_repeat	-3050	NR_138048	100128260		NR_138048	ENSG00000185203	WASIR1	NCRNA00286B	WASH and IL9R antisense RNA 1	ncRNA
102596	chr17	75901851	75902400	+	0	NA	exon (NM_032478, exon 3 of 9)	exon (NM_032478, exon 3 of 9)	2759	NM_032478	64978		NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3|mL38	mitochondrial ribosomal protein L38	protein-coding
100410	chr17	60523701	60524230	+	0	NA	intron (NM_006380, intron 1 of 12)	MIRb|SINE|MIR	2275	NM_001282476	10513		NM_006380	ENSG00000062725	APPBP2	APP-BP2|HS.84084|PAT1	amyloid beta precursor protein binding protein 2	protein-coding
96555	chr17	40417321	40418600	+	0	NA	promoter-TSS (NM_001067)	promoter-TSS (NM_001067)	-64	NM_001067	7153		NM_001067	ENSG00000131747	TOP2A	TOP2|TOP2alpha|TOPIIA|TP2A	DNA topoisomerase II alpha	protein-coding
61757	chr13	74253221	74253650	+	0	NA	intron (NR_144451, intron 1 of 1)	intron (NR_144451, intron 1 of 1)	21991	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
83783	chr16	28745901	28746100	+	0	NA	Intergenic	L1M2|LINE|L1	-6435	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
91387	chr17	4576721	4576980	+	0	NA	Intergenic	Intergenic	-7157	NM_198501	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
124543	chr2	343371	343550	+	0	NA	Intergenic	Tigger17c|DNA|TcMar-Tigger	27176	NR_146953	105373350		NR_146953		LINC01865	-	long intergenic non-protein coding RNA 1865	ncRNA
159597	chr3	15125401	15125630	+	0	NA	Intergenic	L2c|LINE|L2	-26358	NR_126155	64145		NM_022340	ENSG00000131381	RBSN	Rabenosyn-5|ZFYVE20	rabenosyn, RAB effector	protein-coding
119517	chr19	40531501	40531930	+	0	NA	intron (NM_025213, intron 1 of 9)	intron (NM_025213, intron 1 of 9)	1224	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
45212	chr11	117830601	117831400	+	0	NA	intron (NM_001204268, intron 6 of 10)	intron (NM_001204268, intron 6 of 10)	-2911	NM_021603	486		NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
19858	chr1	183194901	183195180	+	0	NA	intron (NM_005562, intron 1 of 22)	intron (NM_005562, intron 1 of 22)	8776	NM_005562	3918		NM_005562	ENSG00000058085	LAMC2	B2T|BM600|CSF|EBR2|EBR2A|JEB3A|JEB3B|LAMB2T|LAMNB2	laminin subunit gamma 2	protein-coding
163430	chr3	50575471	50575930	+	0	NA	intron (NM_001377426, intron 4 of 10)	intron (NM_001377426, intron 4 of 10)	-4673	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
97104	chr17	42483371	42483530	+	0	NA	intron (NM_001378547, intron 9 of 19)	AluSz|SINE|Alu	-11323	NR_049845	100847030		NR_049845	ENSG00000264314	MIR548AT	-	microRNA 548at	ncRNA
122323	chr19	49138171	49138330	+	0	NA	exon (NM_003660, exon 16 of 30)	exon (NM_003660, exon 16 of 30)	17146	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
184785	chr5	111069701	111069930	+	0	NA	promoter-TSS (NR_045089)	promoter-TSS (NR_045089)	-265	NR_045089	85480		NM_033035	ENSG00000145777	TSLP	-	thymic stromal lymphopoietin	protein-coding
78618	chr15	94206301	94206900	+	0	NA	Intergenic	Intergenic	-24961	NM_018349	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
19151	chr1	171577871	171578030	+	0	NA	intron (NM_015172, intron 26 of 33)	AluJb|SINE|Alu	-41813	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
122247	chr19	49021071	49022030	+	0	NA	Intergenic	(AGAG)n|Simple_repeat|Simple_repeat	-2066	NR_073552	101059948		NM_001396011	ENSG00000268655	SAXO3	-	stabilizer of axonemal microtubules 3	protein-coding
120025	chr19	41948471	41948830	+	0	NA	Intergenic	Intergenic	10671	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
157781	chr22	46758751	46759300	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-3592	NM_001284303	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
192140	chr6	16770171	16770330	+	0	NA	Intergenic	Intergenic	-8760	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
116563	chr19	18230901	18231700	+	0	NA	intron (NM_001330172, intron 2 of 15)	intron (NM_001330172, intron 2 of 15)	3079	NM_001330172	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
175182	chr4	56391101	56391300	+	0	NA	Intergenic	AluSc|SINE|Alu	-3692	NM_001286671	132949		NM_181806	ENSG00000157426	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
149410	chr21	31182001	31182980	+	0	NA	exon (NM_001353691, exon 17 of 30)	exon (NM_001353691, exon 17 of 30)	-21550	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
7172	chr1	32256471	32257530	+	0	NA	intron (NM_005356, intron 1 of 12)	intron (NM_005356, intron 1 of 12)	5735	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
58623	chr12	132497001	132497400	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	7049	NM_001382740	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
47071	chr12	566801	567330	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	19421	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
119760	chr19	41289771	41290250	+	0	NA	intron (NM_144732, intron 7 of 14)	AluSc5|SINE|Alu	-20162	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
55606	chr12	106907521	106907880	+	0	NA	Intergenic	Intergenic	-48022	NM_001319666	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
127292	chr2	38742201	38743600	+	0	NA	TTS (NM_001195446)	TTS (NM_001195446)	8461	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
105539	chr17	83191101	83191700	+	0	NA	Intergenic	Intergenic	-35497	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
235537	chrX	47232801	47234020	+	0	NA	intron (NM_001371072, intron 1 of 20)	CpG	401	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
83821	chr16	28841951	28842250	+	0	NA	TTS (NM_001365360)	TTS (NM_001365360)	1907	NR_039872	100616256		NR_039872	ENSG00000283845	MIR4721	-	microRNA 4721	ncRNA
222044	chr8	130246871	130247030	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	49583	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
210097	chr7	97179471	97179730	+	0	NA	intron (NM_020186, intron 1 of 1)	MER20|DNA|hAT-Charlie	61902	NM_020186	57001		NM_020186	ENSG00000196636	SDHAF3	ACN9|DC11|LYRM10|Sdh7	succinate dehydrogenase complex assembly factor 3	protein-coding
60329	chr13	40668351	40669430	+	0	NA	Intergenic	Intergenic	-2249	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
46481	chr11	128317601	128318200	+	0	NA	Intergenic	Intergenic	109134	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
111038	chr19	3092601	3093280	+	0	NA	Intergenic	AluSz|SINE|Alu	-1422	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
36350	chr11	3914451	3915380	+	0	NA	intron (NM_001382571, intron 1 of 9)	L1MB4|LINE|L1	58853	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
53000	chr12	57511751	57512150	+	0	NA	promoter-TSS (NR_106816)	promoter-TSS (NR_106816)	-738	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
121358	chr19	46840071	46841400	+	0	NA	intron (NM_001301078, intron 2 of 4)	AluSx|SINE|Alu	9579	NM_001301076	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
83128	chr16	22574571	22574730	+	0	NA	intron (NR_003676, intron 8 of 8).2	L2b|LINE|L2	28952	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
173822	chr4	18055921	18056380	+	0	NA	Intergenic	Intergenic	-34275	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
119491	chr19	40461671	40461830	+	0	NA	intron (NM_000713, intron 1 of 4)	AluSx3|SINE|Alu	3995	NM_000713	645		NM_000713	ENSG00000090013	BLVRB	BVRB|FLR|HEL-S-10|SDR43U1	biliverdin reductase B	protein-coding
159411	chr3	13486601	13486800	+	0	NA	intron (NM_001330636, intron 3 of 6)	AluSx1|SINE|Alu	6394	NM_001136041	79885		NM_024827	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
14037	chr1	120745901	120746100	+	0	NA	intron (NR_157049, intron 1 of 4)	AluSz|SINE|Alu	22061	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
112487	chr19	6423121	6423800	+	0	NA	intron (NM_001366300, intron 1 of 19)	intron (NM_001366300, intron 1 of 19)	1351	NM_003685	8570		NM_003685	ENSG00000088247	KHSRP	FBP2|FUBP2|KSRP|p75	KH-type splicing regulatory protein	protein-coding
24899	chr10	1042501	1042780	+	0	NA	exon (NM_001317957, exon 3 of 4)	exon (NM_001317957, exon 3 of 4)	6246	NM_001317957	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
234590	chrX	19786571	19786930	+	0	NA	intron (NM_001353892, intron 2 of 17)	L1ME4b|LINE|L1	13023	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
199904	chr6	127863851	127864300	+	0	NA	intron (NM_001164687, intron 1 of 5).2	LTR81AB|LTR|Gypsy	-8887	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
235316	chrX	42944401	42945150	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-166612	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
4788	chr1	23561771	23561930	+	0	NA	Intergenic	Intergenic	-2349	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
106100	chr18	9156001	9156200	+	0	NA	intron (NM_001204056, intron 1 of 11)	AluSz|SINE|Alu	18537	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
74739	chr15	63203201	63204150	+	0	NA	intron (NM_016530, intron 1 of 7)	MIR|SINE|MIR	14069	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
60127	chr13	39035801	39036630	+	0	NA	intron (NM_025138, intron 1 of 12)	intron (NM_025138, intron 1 of 12)	1861	NM_170719	80209		NM_025138	ENSG00000120685	PROSER1	C13orf23	proline and serine rich 1	protein-coding
206606	chr7	35813351	35814050	+	0	NA	intron (NM_001788, intron 1 of 12)	intron (NM_001788, intron 1 of 12)	12481	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
28341	chr10	46634751	46634950	+	0	NA	intron (NR_027632, intron 2 of 6)	intron (NR_027632, intron 2 of 6)	17126	NR_027632	414241		NM_001098846	ENSG00000165874	SHLD2P1	FAM35B|FAM35BP|FAM35EP|bA38L15.1	shieldin complex subunit 2 pseudogene 1	pseudo
87308	chr16	70175321	70176050	+	0	NA	intron (NM_173619, intron 3 of 12)	intron (NM_173619, intron 3 of 12)	1898	NM_173619	283971		NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	C-type lectin domain family 18 member C	protein-coding
113129	chr19	8318701	8319200	+	0	NA	intron (NM_005001, intron 2 of 3)	AluSc|SINE|Alu	2425	NM_005001	4701		NM_005001	ENSG00000267855	NDUFA7	B14.5a|CI-B14.5a	NADH:ubiquinone oxidoreductase subunit A7	protein-coding
22589	chr1	223133601	223134330	+	0	NA	intron (NM_003268, intron 4 of 5)	intron (NM_003268, intron 4 of 5)	9283	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
74568	chr15	60538101	60538550	+	0	NA	intron (NM_134261, intron 2 of 10)	MIRb|SINE|MIR	54201	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
225998	chr9	41340871	41341230	+	0	NA	Intergenic	Intergenic	-17812	NR_148348	107984035		NR_148348		LOC107984035	-	uncharacterized LOC107984035	ncRNA
115889	chr19	16579601	16580150	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-7460	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
133432	chr2	119290871	119291230	+	0	NA	Intergenic	Intergenic	-41979	NR_046721	100874111		NR_046721	ENSG00000229867	STEAP3-AS1	-	STEAP3 antisense RNA 1	ncRNA
48224	chr12	8203771	8203930	+	0	NA	Intergenic	L1MCc|LINE|L1	23641	NR_026788	440078		NR_026788	ENSG00000226711	FAM66C	-	family with sequence similarity 66 member C	ncRNA
199654	chr6	122408601	122409530	+	0	NA	intron (NM_001135564, intron 1 of 11)	intron (NM_001135564, intron 1 of 11)	9413	NM_001243094	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
159742	chr3	15945871	15946100	+	0	NA	Intergenic	AluSc8|SINE|Alu	72214	NR_030289	693148		NR_030289	ENSG00000207815	MIR563	MIRN563|hsa-mir-563	microRNA 563	ncRNA
158564	chr3	4506201	4506650	+	0	NA	intron (NM_002222, intron 2 of 57)	L2a|LINE|L2	13077	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
10455	chr1	66288001	66288300	+	0	NA	intron (NM_001037340, intron 5 of 14)	MSTA|LTR|ERVL-MaLR	-43958	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
6757	chr1	30733621	30734030	+	0	NA	3' UTR (NM_006762, exon 8 of 8)	3' UTR (NM_006762, exon 8 of 8)	5407	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
206956	chr7	38261521	38261980	+	0	NA	intron (NM_001003806, intron 3 of 3)	AluSg|SINE|Alu	11897	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
222450	chr8	138914171	138914530	+	0	NA	promoter-TSS (NM_152888)	promoter-TSS (NM_152888)	-309	NM_152888	169044		NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
129056	chr2	65068801	65069150	+	0	NA	intron (NM_015147, intron 1 of 6)	intron (NM_015147, intron 1 of 6)	12559	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
93324	chr17	18187021	18187550	+	0	NA	intron (NM_017758, intron 1 of 3)	intron (NM_017758, intron 1 of 3)	3457	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
10937	chr1	84154451	84154550	+	0	NA	intron (NM_182948, intron 1 of 9)	L1M3|LINE|L1	-9684	NM_001242857	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
54440	chr12	91778601	91779300	+	0	NA	Intergenic	Intergenic	362763	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
87742	chr16	75219801	75220400	+	0	NA	intron (NM_001329190, intron 1 of 5)	AluJr|SINE|Alu	1112	NM_001329190	1504		NM_001906	ENSG00000168925	CTRB1	CTRB	chymotrypsinogen B1	protein-coding
95888	chr17	38882571	38883050	+	0	NA	intron (NM_001271608, intron 2 of 5)	intron (NM_001271608, intron 2 of 5)	12752	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
19410	chr1	174169671	174169830	+	0	NA	intron (NM_001366447, intron 1 of 20)	AluJo|SINE|Alu	10230	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
125148	chr2	10010921	10011380	+	0	NA	Intergenic	CpG	32251	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
71073	chr14	104844571	104844730	+	0	NA	Intergenic	Intergenic	-20618	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
139161	chr2	219174521	219174980	+	0	NA	intron (NM_001321389, intron 6 of 8)	intron (NM_001321389, intron 6 of 8)	2175	NR_135629	27013		NM_015680	ENSG00000115649	CNPPD1	C2orf24|CGI-57	cyclin Pas1/PHO80 domain containing 1	protein-coding
61277	chr13	50121221	50121800	+	0	NA	intron (NR_109974, intron 2 of 6)	AluSc8|SINE|Alu	4031	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
7015	chr1	31911771	31912450	+	0	NA	intron (NM_001369858, intron 2 of 4)	intron (NM_001369858, intron 2 of 4)	25708	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
85650	chr16	56188771	56189530	+	0	NA	intron (NR_027078, intron 1 of 4)	intron (NR_027078, intron 1 of 4)	1944	NR_027078	283856		NR_027078	ENSG00000246379	GNAO1-DT	-	GNAO1 divergent transcript	ncRNA
107796	chr18	51169091	51169950	+	0	NA	Intergenic	Intergenic	28161	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
142580	chr20	5531921	5532380	+	0	NA	Intergenic	Charlie5|DNA|hAT-Charlie	-22148	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
88521	chr16	85347221	85347480	+	0	NA	Intergenic	Intergenic	-41025	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
27113	chr10	27656421	27656930	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-87940	NR_121652	101929202		NR_121652		MKX-AS1	-	MKX antisense RNA 1	ncRNA
38246	chr11	36492751	36493250	+	0	NA	intron (NM_004620, intron 5 of 6)	intron (NM_004620, intron 5 of 6)	17272	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
119336	chr19	39953201	39954100	+	0	NA	Intergenic	Intergenic	-17355	NM_153001	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
95181	chr17	35183601	35183800	+	0	NA	intron (NM_173167, intron 18 of 18)	intron (NM_173167, intron 18 of 18)	10693	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
91189	chr17	3887451	3888630	+	0	NA	intron (NM_172207, intron 1 of 15)	MIR3|SINE|MIR	2703	NM_172206	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
152581	chr22	21155171	21155530	+	0	NA	Intergenic	L1M3|LINE|L1	-12515	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
83056	chr16	22332401	22332880	+	0	NA	intron (NM_018119, intron 20 of 20).2	intron (NM_018119, intron 20 of 20).2	35231	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
59844	chr13	30462601	30462800	+	0	NA	exon (NM_002128, exon 4 of 5)	exon (NM_002128, exon 4 of 5)	1627	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
187306	chr5	141609551	141609650	+	0	NA	intron (NM_005219, intron 1 of 27)	MIRb|SINE|MIR	9400	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
199753	chr6	125821601	125822000	+	0	NA	intron (NM_001199621, intron 2 of 14)	intron (NM_001199621, intron 2 of 14)	-2942	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
205005	chr7	6475371	6476200	+	0	NA	intron (NM_006854, intron 1 of 4)	intron (NM_006854, intron 1 of 4)	8367	NM_001100603	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
198876	chr6	109450901	109451280	+	0	NA	intron (NM_022765, intron 7 of 24)	L2a|LINE|L2	4682	NM_022765	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
204403	chr7	3064121	3064680	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-20533	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
196550	chr6	44066551	44066950	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	7902	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
142669	chr20	5948651	5948750	+	0	NA	intron (NM_015939, intron 1 of 10)	intron (NM_015939, intron 1 of 10)	1833	NM_015939	51605		NM_015939	ENSG00000089195	TRMT6	CGI-09|GCD10|Gcd10p	tRNA methyltransferase 6 non-catalytic subunit	protein-coding
71286	chr14	105280771	105281200	+	0	NA	intron (NM_001242788, intron 1 of 16)	intron (NM_001242788, intron 1 of 16)	-19789	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
13664	chr1	116559451	116560100	+	0	NA	TTS (NR_039621)	TTS (NR_039621)	336	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
14814	chr1	146283221	146284050	+	0	NA	Intergenic	L2c|LINE|L2	-14138	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
188663	chr5	157250771	157251550	+	0	NA	intron (NM_005546, intron 16 of 16)	L1MC3|LINE|L1	-14963	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
173795	chr4	17628471	17628630	+	0	NA	TTS (NM_015688)	TTS (NM_015688)	13909	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
158105	chr22	50016151	50016250	+	0	NA	Intergenic	Intergenic	-3435	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
109801	chr19	1155171	1155330	+	0	NA	intron (NM_014963, intron 1 of 31)	CpG	19018	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
182781	chr5	68406251	68407430	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	114263	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
172544	chr4	2388101	2388300	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	-23386	NM_001172659	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
135286	chr2	160110001	160110280	+	0	NA	intron (NM_001282389, intron 13 of 14)	MIR|SINE|MIR	-47525	NM_007366	22925		NM_007366	ENSG00000153246	PLA2R1	CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R	phospholipase A2 receptor 1	protein-coding
237572	chrX	123129701	123130100	+	0	NA	Intergenic	L1P3|LINE|L1	-54343	NM_000828	2892		NM_000828	ENSG00000125675	GRIA3	GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94|MRXSW|iGluR3	glutamate ionotropic receptor AMPA type subunit 3	protein-coding
110788	chr19	2444771	2445650	+	0	NA	intron (NM_032737, intron 1 of 11)	intron (NM_032737, intron 1 of 11)	-10210	NR_106958	102466806		NR_106958	ENSG00000283728	MIR7108	hsa-mir-7108	microRNA 7108	ncRNA
47803	chr12	6578721	6578980	+	0	NA	exon (NM_001363606, exon 34 of 40)	exon (NM_001363606, exon 34 of 40)	2759	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
107768	chr18	50909251	50909550	+	0	NA	intron (NM_001168335, intron 3 of 13)	L2c|LINE|L2	30282	NM_001168335	4200		NM_002396	ENSG00000082212	ME2	ODS1	malic enzyme 2	protein-coding
80639	chr16	2991571	2991950	+	0	NA	intron (NR_033861, intron 4 of 4)	intron (NR_033861, intron 4 of 4)	2706	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
147852	chr20	62806651	62807330	+	0	NA	intron (NM_007346, intron 1 of 6)	intron (NM_007346, intron 1 of 6)	-1403	NR_102430	101409261		NR_102430		OGFR-AS1	-	OGFR antisense RNA 1	ncRNA
11042	chr1	84990671	84990830	+	0	NA	intron (NM_001330647, intron 1 of 14)	AluJo|SINE|Alu	6363	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
48712	chr12	10673401	10674880	+	0	NA	promoter-TSS (NM_018423)	promoter-TSS (NM_018423)	-88	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
60099	chr13	36814751	36815380	+	0	NA	Intergenic	L1MB8|LINE|L1	-4157	NM_000538	5994		NM_000538	ENSG00000133111	RFXAP	-	regulatory factor X associated protein	protein-coding
62651	chr13	102391971	102392130	+	0	NA	intron (NM_001321949, intron 1 of 5)	intron (NM_001321949, intron 1 of 5)	2469	NR_036486	283480		NR_036486	ENSG00000243319	FGF14-IT1	-	FGF14 intronic transcript 1	ncRNA
29036	chr10	67612851	67614050	+	0	NA	intron (NM_001291133, intron 3 of 8)	intron (NM_001291133, intron 3 of 8)	52210	NM_001291133	29119		NM_013266	ENSG00000183230	CTNNA3	ARVD13|VR22	catenin alpha 3	protein-coding
34259	chr10	131804901	131805100	+	0	NA	Intergenic	Intergenic	-14801	NR_038365	399827		NM_001001677	ENSG00000189275	LINC01164	-	long intergenic non-protein coding RNA 1164	ncRNA
11554	chr1	91054751	91055250	+	0	NA	Intergenic	L2a|LINE|L2	-32745	NM_032186	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
88670	chr16	85665501	85665700	+	0	NA	intron (NM_001278184, intron 11 of 14)	intron (NM_001278184, intron 11 of 14)	23354	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
174324	chr4	38666751	38667630	+	0	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-2562	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
213144	chr7	131504351	131504650	+	0	NA	exon (NM_001018111, exon 9 of 9)	exon (NM_001018111, exon 9 of 9)	52128	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
140665	chr2	233999071	233999430	+	0	NA	intron (NM_024080, intron 22 of 25)	MLT1H|LTR|ERVL-MaLR	-51452	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
189542	chr5	173925501	173925780	+	0	NA	intron (NM_001308191, intron 2 of 7)	intron (NM_001308191, intron 2 of 7)	32589	NM_001308193	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
33711	chr10	121608621	121608900	+	0	NA	Intergenic	CpG	-10302	NM_022970	2263		NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding
237465	chrX	119760271	119760830	+	0	NA	TTS (NM_001105576)	TTS (NM_001105576)	1962	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
12863	chr1	110106121	110106780	+	0	NA	intron (NR_126382, intron 1 of 3)	intron (NR_126382, intron 1 of 3)	-5993	NM_203412	164153		NM_203412	ENSG00000186150	UBL4B	-	ubiquitin like 4B	protein-coding
10306	chr1	64861621	64862180	+	0	NA	intron (NM_001321857, intron 8 of 24)	intron (NM_001321857, intron 8 of 24)	104649	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
153914	chr22	30316101	30316900	+	0	NA	intron (NM_001204240, intron 1 of 8)	AluJr4|SINE|Alu	10441	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
113994	chr19	10837821	10838280	+	0	NA	Intergenic	AluJo|SINE|Alu	-1838	NM_006858	11018		NM_006858	ENSG00000099203	TMED1	IL1RL1LG|Il1rl1l|Tp24|p24g1	transmembrane p24 trafficking protein 1	protein-coding
136860	chr2	186514901	186515100	+	0	NA	Intergenic	AluYb8|SINE|Alu	28740	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
140801	chr2	236177471	236178580	+	0	NA	Intergenic	Intergenic	-9639	NM_001485	2637		NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
201842	chr6	150142301	150143300	+	0	NA	promoter-TSS (NM_030949)	promoter-TSS (NM_030949)	-244	NM_030949	81706		NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1 regulatory inhibitor subunit 14C	protein-coding
188764	chr5	157597371	157597530	+	0	NA	Intergenic	Intergenic	-21675	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
89085	chr16	88473971	88474850	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	5492	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
211926	chr7	112458121	112458380	+	0	NA	intron (NR_120333, intron 4 of 11)	intron (NR_120333, intron 4 of 11)	6192	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
145638	chr20	44883801	44884000	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-1805	NM_139323	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
93968	chr17	21552701	21553100	+	0	NA	Intergenic	Intergenic	-1222	NR_160801	339263		NM_001113434	ENSG00000212719	LINC02693	C17orf51	long intergenic non-protein coding RNA 2693	ncRNA
42979	chr11	73780721	73781150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6939	NR_134658	51642		NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48|mL48	mitochondrial ribosomal protein L48	protein-coding
64999	chr14	38121371	38121930	+	0	NA	Intergenic	Intergenic	-86254	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
123691	chr19	55013821	55014080	+	0	NA	3' UTR (NM_001256017, exon 7 of 7).2	3' UTR (NM_001256017, exon 7 of 7).2	24314	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
225966	chr9	41123851	41124200	+	0	NA	intron (NR_147036, intron 1 of 6)	CpG	789	NR_147036	440896		NR_015361	ENSG00000276462	LINC03025	-	long intergenic non-protein coding RNA 3025	ncRNA
150800	chr21	43920301	43920900	+	0	NA	intron (NM_001369880, intron 1 of 8)	MER21C|LTR|ERVL	3812	NM_001369880	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
156272	chr22	40436421	40437880	+	0	NA	intron (NM_001282661, intron 4 of 13)	intron (NM_001282661, intron 4 of 13)	26290	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
40705	chr11	64788951	64789550	+	0	NA	3' UTR (NM_001307990, exon 32 of 32)	3' UTR (NM_001307990, exon 32 of 32)	-10708	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
99032	chr17	48868751	48869050	+	0	NA	Intergenic	Intergenic	-23887	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
52524	chr12	56100721	56100980	+	0	NA	intron (NM_001982, intron 26 of 27)	AluSq4|SINE|Alu	-3709	NM_006191	5036		NM_006191	ENSG00000170515	PA2G4	EBP1|HG4-1|ITAF45|p38-2G4	proliferation-associated 2G4	protein-coding
109665	chr19	1018271	1018450	+	0	NA	intron (NM_033420, intron 1 of 9)	intron (NM_033420, intron 1 of 9)	2763	NM_001033026	91304		NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
67143	chr14	68688851	68689430	+	0	NA	Intergenic	Intergenic	-60353	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
233147	chr9	137165571	137166130	+	0	NA	intron (NM_001185090, intron 20 of 20)	intron (NM_001185090, intron 20 of 20)	3420	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
12203	chr1	100388951	100389780	+	0	NA	intron (NM_001319210, intron 3 of 16)	AluSx1|SINE|Alu	36859	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
5100	chr1	24834801	24835250	+	0	NA	intron (NM_013943, intron 4 of 5)	intron (NM_013943, intron 4 of 5)	84391	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
103149	chr17	77412271	77412730	+	0	NA	intron (NM_001293696, intron 1 of 9)	AluJo|SINE|Alu	7423	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
185338	chr5	126845471	126846100	+	0	NA	Intergenic	Intergenic	68649	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
60975	chr13	46651651	46652040	+	0	NA	intron (NM_015116, intron 2 of 18)	AluYh3|SINE|Alu	98675	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
114431	chr19	12680901	12682430	+	0	NA	promoter-TSS (NM_001206974)	promoter-TSS (NM_001206974)	215	NR_161468	1725		NM_001930	ENSG00000095059	DHPS	DHS|DS|MIG13|NEDSSWI	deoxyhypusine synthase	protein-coding
168825	chr3	152240651	152241450	+	0	NA	Intergenic	Intergenic	-2582	NM_001376839	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
62709	chr13	102916051	102916380	+	0	NA	Intergenic	Intergenic	36116	NR_026965	121952		NR_026965	ENSG00000250878	METTL21EP	METTL21CP1	methyltransferase like 21E, pseudogene	pseudo
216418	chr8	19267601	19267800	+	0	NA	Intergenic	Intergenic	-22178	NR_038919	100128993		NR_038919		LOC100128993	-	uncharacterized LOC100128993	ncRNA
79363	chr16	630971	632000	+	0	NA	intron (NM_053284, intron 1 of 1)	intron (NM_053284, intron 1 of 1)	500	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
33171	chr10	112961601	112961900	+	0	NA	intron (NM_001198530, intron 3 of 10)	intron (NM_001198530, intron 3 of 10)	11500	NM_001363501	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
11235	chr1	88890801	88892200	+	0	NA	promoter-TSS (NM_001514)	promoter-TSS (NM_001514)	67	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
206852	chr7	37410271	37410950	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	38342	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
103092	chr17	77331071	77331900	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	11970	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
175354	chr4	69760421	69761280	+	0	NA	promoter-TSS (NM_014465)	promoter-TSS (NM_014465)	-230	NM_014465	27284		NM_014465	ENSG00000173597	SULT1B1	ST1B1|ST1B2|SULT1B2	sulfotransferase family 1B member 1	protein-coding
17000	chr1	156007201	156007780	+	0	NA	Intergenic	AluSz|SINE|Alu	13461	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
229859	chr9	126396621	126397580	+	0	NA	3' UTR (NM_001011703, exon 6 of 6)	3' UTR (NM_001011703, exon 6 of 6)	13404	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
73720	chr15	45164601	45165000	+	0	NA	exon (NM_017434, exon 35 of 35)	exon (NM_017434, exon 35 of 35)	16407	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
216685	chr8	22160351	22160650	+	0	NA	intron (NM_001385659, intron 2 of 7)	AluJb|SINE|Alu	-1298	NM_001317778	6440		NM_003018	ENSG00000168484	SFTPC	BRICD6|PSP-C|SFTP2|SMDP2|SP-C|SP5	surfactant protein C	protein-coding
159405	chr3	13476651	13476750	+	0	NA	TTS (NR_046690)	TTS (NR_046690)	3353	NR_046690	100874101		NR_046690	ENSG00000244502	HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
33878	chr10	124420321	124420830	+	0	NA	Intergenic	Intergenic	-1599	NM_001171814	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
152233	chr22	20158221	20158580	+	0	NA	Intergenic	Intergenic	-7345	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
101168	chr17	65121951	65122380	+	0	NA	Intergenic	Intergenic	-15205	NM_001081955	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
68311	chr14	77322701	77323000	+	0	NA	intron (NM_001312660, intron 2 of 9)	intron (NM_001312660, intron 2 of 9)	-1689	NM_001363703	2954		NM_001513	ENSG00000100577	GSTZ1	GSTZ1-1|MAAI|MAAID|MAI	glutathione S-transferase zeta 1	protein-coding
76904	chr15	78004321	78004780	+	0	NA	intron (NM_144572, intron 10 of 12)	intron (NM_144572, intron 10 of 12)	-10325	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
8898	chr1	43934051	43934400	+	0	NA	5' UTR (NM_057091, exon 2 of 5)	5' UTR (NM_057091, exon 2 of 5)	424	NM_057091	9048		NM_003976	ENSG00000117407	ARTN	ART|ENOVIN|EVN|NBN	artemin	protein-coding
182063	chr5	55944621	55944880	+	0	NA	intron (NR_157112, intron 16 of 17)	intron (NR_157112, intron 16 of 17)	50213	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
64075	chr14	22568421	22569230	+	0	NA	intron (NM_001344, intron 2 of 2)	AluJo|SINE|Alu	-11763	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
42095	chr11	67513551	67513850	+	0	NA	Intergenic	L1MC3|LINE|L1	-5538	NM_001271849	10263		NM_005851	ENSG00000167797	CDK2AP2	DOC-1R|DOC1R|p14	cyclin dependent kinase 2 associated protein 2	protein-coding
34317	chr10	132154371	132154730	+	0	NA	intron (NM_001323090, intron 19 of 23)	intron (NM_001323090, intron 19 of 23)	-32398	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
213775	chr7	140695501	140695700	+	0	NA	TTS (NM_052853)	TTS (NM_052853)	-1108	NM_004546	4708		NM_004546	ENSG00000090266	NDUFB2	AGGG|CI-AGGG	NADH:ubiquinone oxidoreductase subunit B2	protein-coding
44389	chr11	103035901	103036400	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	56010	NM_032299	84259		NM_032299	ENSG00000137692	DCUN1D5	DCNL5|SCCRO5	defective in cullin neddylation 1 domain containing 5	protein-coding
215086	chr7	155002401	155004430	+	0	NA	promoter-TSS (NM_007349)	promoter-TSS (NM_007349)	-18	NR_028090	202781		NR_028090	ENSG00000273344	PAXIP1-DT	PAXIP1-AS1	PAXIP1 divergent transcript	ncRNA
198972	chr6	110891701	110892200	+	0	NA	intron (NM_001634, intron 4 of 8)	AluSz|SINE|Alu	17166	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
46466	chr11	128291801	128292730	+	0	NA	Intergenic	Intergenic	83499	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
180365	chr5	6849771	6849930	+	0	NA	Intergenic	Intergenic	-21929	NR_036242	100422999		NR_036242	ENSG00000283420	MIR4278	-	microRNA 4278	ncRNA
2739	chr1	10668451	10669030	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	127906	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
94648	chr17	30125001	30125630	+	0	NA	intron (NM_032141, intron 2 of 6)	intron (NM_032141, intron 2 of 6)	-8155	NR_036149	100423003		NR_036149	ENSG00000284399	MIR3184	-	microRNA 3184	ncRNA
47263	chr12	1529821	1530520	+	0	NA	non-coding (NR_160736, exon 2 of 2)	non-coding (NR_160736, exon 2 of 2)	2022	NR_160736	107984507		NR_160736		LOC107984507	-	uncharacterized LOC107984507	ncRNA
160120	chr3	19957571	19957950	+	0	NA	intron (NM_001292048, intron 2 of 5)	L1MA9|LINE|L1	10663	NM_004162	5868		NM_004162	ENSG00000144566	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
42060	chr11	67476351	67476780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6461	NM_003977	9049		NM_003977	ENSG00000110711	AIP	ARA9|FKBP16|FKBP37|PITA1|SMTPHN|XAP-2|XAP2	aryl hydrocarbon receptor interacting protein	protein-coding
191273	chr6	6190601	6190830	+	0	NA	intron (NM_000129, intron 10 of 14)	L1PA3|LINE|L1	-21280	NR_107007	102466866		NR_107007	ENSG00000263572	MIR7853	hsa-mir-7853	microRNA 7853	ncRNA
154537	chr22	36155601	36156000	+	0	NA	intron (NM_030644, intron 1 of 4)	intron (NM_030644, intron 1 of 4)	4955	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
148363	chr20	63858501	63859550	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2473	NM_080622	140701		NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
203999	chr7	1826101	1826500	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	17953	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
133997	chr2	130838771	130838930	+	0	NA	intron (NM_001375900, intron 1 of 12)	intron (NM_001375900, intron 1 of 12)	1936	NM_001375901	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
220577	chr8	100826071	100826230	+	0	NA	Intergenic	Intergenic	-104062	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
199248	chr6	111838801	111839480	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	33931	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
99245	chr17	49700301	49700500	+	0	NA	TTS (NM_001278784)	TTS (NM_001278784)	7564	NM_001278784	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
48172	chr12	7970121	7971100	+	0	NA	Intergenic	Intergenic	-34423	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
184737	chr5	109694901	109695400	+	0	NA	intron (NM_002372, intron 1 of 21)	intron (NM_002372, intron 1 of 21)	5784	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
51083	chr12	49959921	49960330	+	0	NA	intron (NR_110589, intron 1 of 1)	intron (NR_110589, intron 1 of 1)	-1747	NM_001651	362		NM_001651	ENSG00000161798	AQP5	AQP-5|PPKB	aquaporin 5	protein-coding
201690	chr6	149564271	149564430	+	0	NA	Intergenic	Intergenic	-2025	NM_138785	116254		NM_138785	ENSG00000055211	GINM1	C6orf72	glycosylated integral membrane protein 1	protein-coding
1228	chr1	2276251	2277050	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	48331	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
10044	chr1	58573351	58574430	+	0	NA	Intergenic	Intergenic	3362	NM_002353	4070		NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor associated calcium signal transducer 2	protein-coding
27773	chr10	35355901	35357100	+	0	NA	intron (NM_001282852, intron 1 of 8)	intron (NM_001282852, intron 1 of 8)	19626	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
101196	chr17	65433671	65434330	+	0	NA	Intergenic	Intergenic	-23541	NR_131984	105827617		NR_131984	ENSG00000263520	LINC02563	CRAT40	long intergenic non-protein coding RNA 2563	ncRNA
182369	chr5	60677451	60678000	+	0	NA	intron (NM_001145208, intron 2 of 9)	AluJr|SINE|Alu	22441	NM_001145208	55789		NM_018369	ENSG00000035499	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
170226	chr3	184177771	184178030	+	0	NA	intron (NM_001311198, intron 3 of 12)	intron (NM_001311198, intron 3 of 12)	3045	NM_004068	1173		NM_004068	ENSG00000161203	AP2M1	AP50|CLAPM1|MRD60|mu2	adaptor related protein complex 2 subunit mu 1	protein-coding
9669	chr1	52696951	52699530	+	0	NA	exon (NM_023077, exon 1 of 3)	exon (NM_023077, exon 1 of 3)	107	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
45152	chr11	117202251	117202350	+	0	NA	promoter-TSS (NR_045215)	promoter-TSS (NR_045215)	-386	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
205884	chr7	25108451	25108850	+	0	NA	Intergenic	L2|LINE|L2	16610	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
202413	chr6	157884801	157885800	+	0	NA	intron (NM_016224, intron 4 of 17)	intron (NM_016224, intron 4 of 17)	62054	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
13190	chr1	112619401	112620850	+	0	NA	promoter-TSS (NM_138728)	promoter-TSS (NM_138728)	293	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
36885	chr11	10742621	10743170	+	0	NA	Intergenic	Intergenic	-8351	NM_001346279	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
183257	chr5	76426251	76426350	+	0	NA	intron (NM_006633, intron 1 of 35)	MER94|DNA|hAT-Blackjack	23015	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
147606	chr20	62088251	62089180	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-22905	NM_003185	6874		NM_003185	ENSG00000130699	TAF4	MRD73|TAF(II)130|TAF(II)135|TAF2C|TAF2C1|TAF4A|TAFII-130|TAFII-135|TAFII130|TAFII135	TATA-box binding protein associated factor 4	protein-coding
131808	chr2	98598901	98599500	+	0	NA	TTS (NM_001008215)	TTS (NM_001008215)	9312	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
203124	chr6	166748801	166749250	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	113500	NM_001006932	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
196778	chr6	45590171	45590530	+	0	NA	Intergenic	Intergenic	168075	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
176382	chr4	88611721	88612430	+	0	NA	intron (NM_001375479, intron 4 of 25)	intron (NM_001375479, intron 4 of 25)	19595	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
54241	chr12	82360901	82361550	+	0	NA	intron (NR_144942, intron 1 of 10)	LTR12C|LTR|ERV1	-2420	NR_033192	29080		NM_014167	ENSG00000133773	CCDC59	BR22|HSPC128|TAP26	coiled-coil domain containing 59	protein-coding
51276	chr12	51175401	51175900	+	0	NA	Intergenic	MIR|SINE|MIR	-2515	NM_001173452	7024		NM_005653	ENSG00000135457	TFCP2	LBP1C|LSF|LSF1D|SEF|TFCP2C	transcription factor CP2	protein-coding
10552	chr1	67072351	67072450	+	0	NA	Intergenic	MER57A1|LTR|ERV1	-18252	NM_015139	23169		NM_015139	ENSG00000116704	SLC35D1	SHNKND|UGTREL7	solute carrier family 35 member D1	protein-coding
191540	chr6	11491471	11491830	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-46099	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
148069	chr20	63283151	63283530	+	0	NA	promoter-TSS (NR_104023)	promoter-TSS (NR_104023)	-972	NR_104023	55738		NM_018209	ENSG00000101199	ARFGAP1	ARF1GAP|HRIHFB2281	ADP ribosylation factor GTPase activating protein 1	protein-coding
13165	chr1	111758371	111758730	+	0	NA	intron (NM_007204, intron 2 of 10)	L2a|LINE|L2	2649	NM_007204	11218		NM_007204	ENSG00000064703	DDX20	DP103|GEMIN3	DEAD-box helicase 20	protein-coding
132484	chr2	105935101	105935930	+	0	NA	Intergenic	Intergenic	83668	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
135813	chr2	170235971	170236130	+	0	NA	non-coding (NR_045684, exon 7 of 35)	non-coding (NR_045684, exon 7 of 35)	57903	NR_045684	140469		NM_138995	ENSG00000071909	MYO3B	-	myosin IIIB	protein-coding
19211	chr1	172449821	172450430	+	0	NA	intron (NM_139240, intron 3 of 6)	intron (NM_139240, intron 3 of 6)	-2768	NM_001300760	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
147956	chr20	62966301	62966800	+	0	NA	exon (NM_001302643, exon 12 of 14)	exon (NM_001302643, exon 12 of 14)	13841	NM_022082	63910		NM_022082	ENSG00000101194	SLC17A9	C20orf59|POROK8|VNUT	solute carrier family 17 member 9	protein-coding
220320	chr8	98840951	98841050	+	0	NA	intron (NM_001256312, intron 3 of 12)	MLT1F2|LTR|ERVL-MaLR	-15312	NM_006281	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
85926	chr16	57104921	57105180	+	0	NA	intron (NM_152727, intron 1 of 15)	L2b|LINE|L2	12467	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
211822	chr7	108189871	108190030	+	0	NA	intron (NM_001371130, intron 18 of 28)	intron (NM_001371130, intron 18 of 28)	53435	NM_001371181	4897		NM_005010	ENSG00000091129	NRCAM	NEDNMS	neuronal cell adhesion molecule	protein-coding
186894	chr5	139569251	139569500	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	8036	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
14944	chr1	147647651	147649080	+	0	NA	non-coding (NR_136633, exon 9 of 9)	non-coding (NR_136633, exon 9 of 9)	22159	NR_136634	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
166612	chr3	119322651	119324250	+	0	NA	promoter-TSS (NR_046748)	promoter-TSS (NR_046748)	-690	NR_046748	100874246		NR_046748	ENSG00000241155	ARHGAP31-AS1	-	ARHGAP31 antisense RNA 1	ncRNA
225862	chr9	38362901	38363300	+	0	NA	Intergenic	Intergenic	-29602	NM_000692	219		NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
78538	chr15	92960301	92961050	+	0	NA	intron (NM_001271, intron 16 of 38)	L1MB1|LINE|L1	56276	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
88903	chr16	87778951	87779680	+	0	NA	promoter-TSS (NR_120309)	promoter-TSS (NR_120309)	-167	NR_120309	102724467		NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA
138790	chr2	216107451	216107750	+	0	NA	Intergenic	AluJo|SINE|Alu	-1748	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
204291	chr7	2664771	2665950	+	0	NA	TTS (NM_025250)	TTS (NM_025250)	-14162	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
190993	chr6	3052551	3052850	+	0	NA	Intergenic	Intergenic	-11267	NM_001317061	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
193688	chr6	31103271	31103430	+	0	NA	Intergenic	L1M1|LINE|L1	9225	NM_014070	29113		NM_014070	ENSG00000204542	C6orf15	STG	chromosome 6 open reading frame 15	protein-coding
122874	chr19	50501871	50502030	+	0	NA	Intergenic	Intergenic	9241	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
59914	chr13	30844871	30845230	+	0	NA	Intergenic	L2a|LINE|L2	-37512	NR_103813	440132		NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA
7346	chr1	32757271	32758400	+	0	NA	intron (NM_001369553, intron 1 of 6)	intron (NM_001369553, intron 1 of 6)	3836	NM_001369553	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
168547	chr3	146542071	146542500	+	0	NA	intron (NM_021105, intron 1 of 8)	L2b|LINE|L2	2270	NM_001363872	5359		NM_021105	ENSG00000188313	PLSCR1	MMTRA1B	phospholipid scramblase 1	protein-coding
230406	chr9	128113901	128114100	+	0	NA	non-coding (NR_033374, exon 4 of 5)	non-coding (NR_033374, exon 4 of 5)	4734	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
81700	chr16	11240701	11241300	+	0	NA	Intergenic	Intergenic	15182	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
138461	chr2	206392101	206392300	+	0	NA	Intergenic	Intergenic	-51332	NM_003812	8745		NM_003812	ENSG00000114948	ADAM23	MDC-3|MDC3	ADAM metallopeptidase domain 23	protein-coding
20875	chr1	202133601	202134200	+	0	NA	TTS (NM_004767)	TTS (NM_004767)	10837	NM_138795	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
18067	chr1	160642901	160643630	+	0	NA	intron (NR_104400, intron 1 of 4)	LTR68|LTR|ERV1	3779	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
50126	chr12	45244251	45244800	+	0	NA	intron (NM_001142679, intron 1 of 19)	Charlie4z|DNA|hAT-Charlie	28430	NM_001204803	196527		NM_001025356	ENSG00000177119	ANO6	BDPLT7|SCTS|TMEM16F	anoctamin 6	protein-coding
235585	chrX	47570371	47570530	+	0	NA	intron (NM_001256196, intron 14 of 15)	intron (NM_001256196, intron 14 of 15)	9245	NM_001654	369		NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
219833	chr8	81731851	81732830	+	0	NA	promoter-TSS (NM_152284)	promoter-TSS (NM_152284)	-108	NM_152284	92421		NM_152284	ENSG00000164695	CHMP4C	SNF7-3|Shax3|VPS32C	charged multivesicular body protein 4C	protein-coding
78769	chr15	99248051	99248900	+	0	NA	intron (NM_001353869, intron 2 of 12)	intron (NM_001353869, intron 2 of 12)	1106	NR_109947	64927		NM_022905	ENSG00000103852	TTC23	HCC-8	tetratricopeptide repeat domain 23	protein-coding
193415	chr6	30448971	30449880	+	0	NA	Intergenic	Intergenic	-40084	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
201946	chr6	151691101	151691600	+	0	NA	intron (NM_001385570, intron 1 of 8)	intron (NM_001385570, intron 1 of 8)	823	NM_001385570	2099		NM_000125	ENSG00000091831	ESR1	ER|ESR|ESRA|ESTRR|Era|NR3A1	estrogen receptor 1	protein-coding
42325	chr11	68481151	68481850	+	0	NA	intron (NM_001352362, intron 2 of 24)	intron (NM_001352362, intron 2 of 24)	20748	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
206780	chr7	36724021	36725330	+	0	NA	promoter-TSS (NM_001177507)	promoter-TSS (NM_001177507)	-126	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
107925	chr18	57629971	57631400	+	0	NA	intron (NR_164148, intron 1 of 2)	AluJb|SINE|Alu	354	NR_164148	100505549		NR_164148	ENSG00000267040	ATP8B1-AS1	-	ATP8B1 antisense RNA 1	ncRNA
209583	chr7	77509571	77509950	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-27535	NM_002835	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
222826	chr8	142481571	142481730	+	0	NA	exon (NM_001702, exon 11 of 31)	exon (NM_001702, exon 11 of 31)	32001	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
140815	chr2	236535901	236536130	+	0	NA	Intergenic	Intergenic	-28480	NM_001270584	79781		NM_024726	ENSG00000132321	IQCA1	4930465P12Rik|DRC11|IQCA	IQ motif containing with AAA domain 1	protein-coding
46280	chr11	124845471	124846130	+	0	NA	Intergenic	Intergenic	-19632	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
96452	chr17	40217671	40217830	+	0	NA	Intergenic	Intergenic	-1554	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
228644	chr9	106964301	106964500	+	0	NA	intron (NM_001347997, intron 7 of 12)	Tigger13a|DNA|TcMar-Tigger	101234	NM_001347997	58499		NM_021224	ENSG00000148143	ZNF462	WSKA|ZFPIP|Zfp462	zinc finger protein 462	protein-coding
2702	chr1	10642401	10643600	+	0	NA	exon (NM_001079843, exon 20 of 21)	exon (NM_001079843, exon 20 of 21)	153646	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
42473	chr11	69801651	69801750	+	0	NA	Intergenic	Intergenic	17716	NM_005247	2248		NM_005247	ENSG00000186895	FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
64493	chr14	24316651	24316950	+	0	NA	3' UTR (NM_001143919, exon 2 of 2).2	3' UTR (NM_001143919, exon 2 of 2).2	3693	NM_181657	1241		NM_181657	ENSG00000213903	LTB4R	BLT1|BLTR|CMKRL1|GPR16|LTB4R1|LTBR1|P2RY7|P2Y7	leukotriene B4 receptor	protein-coding
181883	chr5	54522021	54522480	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	4491	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
326	chr1	983851	984600	+	0	NA	Intergenic	Intergenic	-2132	NM_001291366	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
112435	chr19	6360301	6360580	+	0	NA	Intergenic	AluYf1|SINE|Alu	-1091	NM_006012	8192		NM_006012	ENSG00000125656	CLPP	DFNB81|PRLTS3	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding
96234	chr17	39797171	39797330	+	0	NA	intron (NM_001257408, intron 2 of 6)	intron (NM_001257408, intron 2 of 6)	-19025	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
120453	chr19	44587951	44588250	+	0	NA	Intergenic	MER41B|LTR|ERV1	-25463	NM_001205280	147710		NM_001205280	ENSG00000216588	IGSF23	-	immunoglobulin superfamily member 23	protein-coding
139514	chr2	224562121	224562380	+	0	NA	intron (NM_003590, intron 1 of 15)	intron (NM_003590, intron 1 of 15)	7705	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
170077	chr3	182967471	182968700	+	0	NA	intron (NM_001308101, intron 1 of 6)	FLAM_C|SINE|Alu	12453	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
231238	chr9	129977471	129977830	+	0	NA	intron (NM_001363755, intron 4 of 15)	AluSq2|SINE|Alu	65539	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
188813	chr5	158808051	158808150	+	0	NA	intron (NM_001324107, intron 8 of 15)	UCON78|DNA|DNA	289856	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
65607	chr14	52254171	52254330	+	0	NA	Intergenic	Intergenic	-13448	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
54958	chr12	96254821	96255350	+	0	NA	promoter-TSS (NM_001303511)	promoter-TSS (NM_001303511)	-413	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
218941	chr8	60925551	60927100	+	0	NA	Intergenic	Intergenic	-15527	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
227478	chr9	91155321	91155980	+	0	NA	intron (NR_135306, intron 2 of 2)	MIR|SINE|MIR	36588	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
126348	chr2	27405771	27406130	+	0	NA	intron (NM_177983, intron 1 of 9)	AluSp|SINE|Alu	3641	NM_177983	5496		NM_177983	ENSG00000115241	PPM1G	PP2CG|PP2CGAMMA|PPP2CG	protein phosphatase, Mg2+/Mn2+ dependent 1G	protein-coding
12726	chr1	109539171	109539530	+	0	NA	promoter-TSS (NM_031936)	promoter-TSS (NM_031936)	-522	NM_031936	83873		NM_031936	ENSG00000156097	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
130297	chr2	84908651	84909660	+	0	NA	Intergenic	Intergenic	3499	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
200299	chr6	132820471	132821750	+	0	NA	Intergenic	Intergenic	3891	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
29478	chr10	70567071	70567230	+	0	NA	3' UTR (NM_014431, exon 20 of 20)	3' UTR (NM_014431, exon 20 of 20)	35591	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
158111	chr22	50030071	50031050	+	0	NA	exon (NM_001350317, exon 13 of 14)	exon (NM_001350317, exon 13 of 14)	-17795	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
118191	chr19	35125771	35125930	+	0	NA	intron (NM_139284, intron 8 of 8)	L2b|LINE|L2	3150	NR_106947	102466205		NR_106947	ENSG00000284065	MIR6887	hsa-mir-6887	microRNA 6887	ncRNA
86987	chr16	68223501	68223700	+	0	NA	intron (NM_173163, intron 10 of 10)	AluJr|SINE|Alu	9899	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
73838	chr15	49396351	49396550	+	0	NA	intron (NM_152647, intron 11 of 15)	L1PA2|LINE|L1	-26792	NM_002009	2252		NM_002009	ENSG00000140285	FGF7	HBGF-7|KGF	fibroblast growth factor 7	protein-coding
72358	chr15	31346201	31346850	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	19690	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
228743	chr9	109969221	109969480	+	0	NA	intron (NM_147150, intron 6 of 9)	intron (NM_147150, intron 6 of 9)	-79248	NM_001004065	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
3042	chr1	12149221	12149700	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-17483	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
109815	chr19	1164371	1165050	+	0	NA	intron (NM_014963, intron 1 of 31)	GA-rich|Low_complexity|Low_complexity	9558	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
27253	chr10	29682901	29683100	+	0	NA	intron (NM_003174, intron 2 of 35)	MER4B|LTR|ERV1	-48029	NM_021738	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
141180	chr2	239284171	239284580	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-21087	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
166966	chr3	125389021	125389480	+	0	NA	Intergenic	AluJo|SINE|Alu	-13896	NM_001348430	7707		NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding
7021	chr1	31917101	31917300	+	0	NA	intron (NM_001369859, intron 3 of 6)	intron (NM_001369859, intron 3 of 6)	20618	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
119203	chr19	39442071	39442230	+	0	NA	Intergenic	AluSg|SINE|Alu	-3396	NM_001130825	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
185790	chr5	132416321	132416680	+	0	NA	intron (NR_161242, intron 1 of 3)	intron (NR_161242, intron 1 of 3)	5571	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
237888	chrX	131704221	131704500	+	0	NA	intron (NR_026975, intron 12 of 12)	intron (NR_026975, intron 12 of 12)	126283	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
26456	chr10	17506501	17506950	+	0	NA	Intergenic	Intergenic	-52130	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
35558	chr11	1652651	1653430	+	0	NA	Intergenic	Intergenic	-12557	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
230094	chr9	127561951	127562650	+	0	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	6773	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
23798	chr1	234302351	234302830	+	0	NA	intron (NM_173508, intron 3 of 7)	L2c|LINE|L2	-3877	NR_039818	100616380		NR_039818	ENSG00000264377	MIR4671	-	microRNA 4671	ncRNA
185461	chr5	131273521	131274030	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluY|SINE|Alu	9722	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
114368	chr19	12478601	12479000	+	0	NA	intron (NM_152601, intron 1 of 3)	LTR52|LTR|ERVL	6016	NM_152601	163051		NM_152601	ENSG00000242852	ZNF709	-	zinc finger protein 709	protein-coding
97605	chr17	44121001	44121530	+	0	NA	TTS (NR_136415)	TTS (NR_136415)	2376	NM_001015053	10014		NM_005474	ENSG00000108840	HDAC5	HD5|NY-CO-9	histone deacetylase 5	protein-coding
22050	chr1	211135301	211135580	+	0	NA	Intergenic	Intergenic	-1292	NM_172362	3756		NM_002238	ENSG00000143473	KCNH1	EAG|EAG1|K(V)10.1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG|hEAG1	potassium voltage-gated channel subfamily H member 1	protein-coding
8556	chr1	41308621	41308880	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-52684	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
11313	chr1	89312651	89312950	+	0	NA	Intergenic	MER61B|LTR|ERV1	-22438	NR_077244	729930		NR_077244		LOC729930	-	intraflagellar transport associated protein pseudogene	pseudo
215534	chr7	158777121	158777880	+	0	NA	intron (NM_020728, intron 6 of 21)	THE1D|LTR|ERVL-MaLR	52009	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
179255	chr4	174714471	174714650	+	0	NA	intron (NM_001042543, intron 5 of 8)	intron (NM_001042543, intron 5 of 8)	114687	NM_001042543	8001		NM_006529	ENSG00000145451	GLRA3	-	glycine receptor alpha 3	protein-coding
168792	chr3	152183451	152184230	+	0	NA	intron (NR_136178, intron 1 of 2)	intron (NR_136178, intron 1 of 2)	21589	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
151181	chr21	45072371	45072980	+	0	NA	non-coding (NR_027292, exon 1 of 1)	non-coding (NR_027292, exon 1 of 1)	536	NR_027292	728039		NM_032653	ENSG00000293210	SSR4P1	C21orf122|PRED57|PRED90	signal sequence receptor subunit 4 pseudogene 1	pseudo
73131	chr15	41329771	41329930	+	0	NA	intron (NM_007280, intron 2 of 4)	AluSg7|SINE|Alu	2741	NM_007280	11339		NM_007280	ENSG00000104147	OIP5	5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta	Opa interacting protein 5	protein-coding
50058	chr12	44677821	44678480	+	0	NA	intron (NM_001145108, intron 12 of 19)	L2c|LINE|L2	197511	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
236116	chrX	57295651	57295950	+	0	NA	intron (NM_174912, intron 2 of 10)	L1PA4|LINE|L1	8946	NR_148564	158584		NM_174912	ENSG00000165591	FAAH2	AMDD	fatty acid amide hydrolase 2	protein-coding
51756	chr12	53287601	53288350	+	0	NA	exon (NM_012291, exon 19 of 31)	exon (NM_012291, exon 19 of 31)	-7476	NM_145897	5204		NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding
105300	chr17	82519121	82520680	+	0	NA	exon (NM_004514, exon 1 of 9)	exon (NM_004514, exon 1 of 9)	168	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
187233	chr5	141330321	141330800	+	0	NA	promoter-TSS (NM_031993)	promoter-TSS (NM_031993)	-125	NM_018912	56114		NM_018912	ENSG00000204956	PCDHGA1	PCDH-GAMMA-A1	protocadherin gamma subfamily A, 1	protein-coding
203670	chr7	1006451	1006750	+	0	NA	intron (NR_156697, intron 2 of 4)	CpG	16426	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
157063	chr22	42591271	42592100	+	0	NA	intron (NM_001278657, intron 7 of 8)	intron (NM_001278657, intron 7 of 8)	-9674	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
136610	chr2	178700851	178701150	+	0	NA	intron (NM_001256850, intron 109 of 312)	intron (NM_001256850, intron 109 of 312)	-75926	NR_120594	101927055		NR_120594	ENSG00000237298	LOC101927055	-	uncharacterized LOC101927055	ncRNA
148110	chr20	63430221	63430980	+	0	NA	intron (NM_004518, intron 8 of 14)	intron (NM_004518, intron 8 of 14)	42055	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
103176	chr17	77440501	77440780	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-10109	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
138338	chr2	203853051	203854050	+	0	NA	Intergenic	Intergenic	-14221	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
123538	chr19	54360471	54360830	+	0	NA	intron (NR_110280, intron 3 of 9).2	intron (NR_110280, intron 3 of 9).2	4281	NR_110279	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
171144	chr3	195555101	195555680	+	0	NA	Intergenic	Intergenic	-12065	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
210108	chr7	97937551	97937650	+	0	NA	intron (NR_147989, intron 1 of 18)	MLT1J1|LTR|ERVL-MaLR	-9159	NM_001352496	440		NM_001673	ENSG00000070669	ASNS	ASNSD|TS11	asparagine synthetase (glutamine-hydrolyzing)	protein-coding
201979	chr6	152278001	152278700	+	0	NA	intron (NM_033071, intron 96 of 145)	intron (NM_033071, intron 96 of 145)	-92972	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
131977	chr2	100235021	100235580	+	0	NA	intron (NR_103730, intron 1 of 2)	intron (NR_103730, intron 1 of 2)	27046	NR_103730	150577		NM_001102655	ENSG00000232084	LINC01104	-	long intergenic non-protein coding RNA 1104	ncRNA
145591	chr20	44532901	44533530	+	0	NA	intron (NM_007066, intron 1 of 3)	FLAM_A|SINE|Alu	1340	NM_007066	11142		NM_007066	ENSG00000168734	PKIG	PKI-gamma	cAMP-dependent protein kinase inhibitor gamma	protein-coding
30795	chr10	84374171	84374330	+	0	NA	TTS (NM_001284241)	TTS (NM_001284241)	45661	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
92299	chr17	8112371	8112850	+	0	NA	intron (NM_021628, intron 6 of 15)	intron (NM_021628, intron 6 of 15)	5693	NM_001369446	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
72196	chr15	30129851	30130500	+	0	NA	intron (NR_026859, intron 4 of 4)	intron (NR_026859, intron 4 of 4)	-4876	NM_001355469	653075		NM_001355469	ENSG00000261247	GOLGA8T	-	golgin A8 family member T	protein-coding
166998	chr3	125937151	125937250	+	0	NA	promoter-TSS (NM_001015050)	promoter-TSS (NM_001015050)	-21	NM_001195223	200810		NM_001015050	ENSG00000291096	ALG1L1P	ALG1L|ALG1L1	ALG1 like 1, pseudogene	pseudo
193293	chr6	30072621	30073280	+	0	NA	intron (NM_025236, intron 3 of 3).6	MLT1C|LTR|ERVL-MaLR	2899	NM_170769	80352		NM_025236	ENSG00000204618	RNF39	FAP216|HZF|HZFW|LIRF	ring finger protein 39	protein-coding
71592	chr14	106518001	106518600	+	0	NA	Intergenic	Intergenic	35861	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
98697	chr17	47918001	47918400	+	0	NA	intron (NM_003110, intron 3 of 6)	intron (NM_003110, intron 3 of 6)	21964	NM_003110	6668		NM_003110	ENSG00000167182	SP2	-	Sp2 transcription factor	protein-coding
25162	chr10	5293721	5294350	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-22799	NR_149060	110806285		NR_149060	ENSG00000224034	LINC02561	-	long intergenic non-protein coding RNA 2561	ncRNA
16689	chr1	155202071	155202830	+	0	NA	intron (NM_007112, intron 8 of 22)	intron (NM_007112, intron 8 of 22)	5447	NM_001252608	7059		NM_007112	ENSG00000169231	THBS3	TSP3	thrombospondin 3	protein-coding
177175	chr4	108156501	108156700	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	10197	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
26305	chr10	14993551	14994000	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	34387	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
236634	chrX	74609221	74609630	+	0	NA	intron (NM_016120, intron 1 of 3)	AluY|SINE|Alu	5199	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
157369	chr22	44704971	44705130	+	0	NA	intron (NM_181334, intron 1 of 14)	intron (NM_181334, intron 1 of 14)	2846	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
114396	chr19	12615851	12615950	+	0	NA	intron (NM_153358, intron 1 of 3)	L1MC2|LINE|L1	4980	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
154316	chr22	31972351	31972650	+	0	NA	intron (NR_149128, intron 1 of 4)	intron (NR_149128, intron 1 of 4)	1677	NR_149128	105372999		NR_149128		LINC02558	-	long intergenic non-protein coding RNA 2558	ncRNA
30760	chr10	84293771	84293930	+	0	NA	non-coding (NR_038220, exon 6 of 6)	non-coding (NR_038220, exon 6 of 6)	13870	NR_038220	170425		NR_038220	ENSG00000229404	LINC00858	CRCAL-2|LNMAT2	long intergenic non-protein coding RNA 858	ncRNA
128629	chr2	61363251	61363550	+	0	NA	intron (NM_014709, intron 10 of 79)	Tigger3a|DNA|TcMar-Tigger	53977	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
38578	chr11	46119071	46120600	+	0	NA	intron (NM_001352028, intron 1 of 18)	CpG	984	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
160674	chr3	32175621	32176280	+	0	NA	Intergenic	Intergenic	-62729	NM_001320308	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
155590	chr22	38759821	38760080	+	0	NA	Intergenic	Intergenic	-3952	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
115510	chr19	15421201	15421400	+	0	NA	3' UTR (NM_001330395, exon 8 of 8)	3' UTR (NM_001330395, exon 8 of 8)	-2312	NM_001291478	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
205011	chr7	6481251	6481950	+	0	NA	intron (NM_006854, intron 1 of 4)	FRAM|SINE|Alu	2552	NM_001100603	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
211795	chr7	107745701	107746300	+	0	NA	intron (NM_001284291, intron 1 of 5)	L2b|LINE|L2	-1419	NR_144537	101927974		NR_144536	ENSG00000241764	CBLL1-AS1	-	CBLL1 antisense RNA 1	ncRNA
44187	chr11	96259621	96260330	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-81463	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
34119	chr10	127293321	127294000	+	0	NA	intron (NM_001377553, intron 29 of 50)	intron (NM_001377553, intron 29 of 50)	-97069	NM_001039762	642938		NM_001039762	ENSG00000188916	INSYN2A	C10orf141|FAM196A|INSYN2	inhibitory synaptic factor 2A	protein-coding
57664	chr12	122749871	122750280	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-2749	NM_003677	8562		NM_003677	ENSG00000139726	DENR	DRP|DRP1|SMAP-3	density regulated re-initiation and release factor	protein-coding
49049	chr12	14392351	14392680	+	0	NA	intron (NM_181352, intron 1 of 14)	L2a|LINE|L2	7234	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
94426	chr17	29136851	29137430	+	0	NA	intron (NM_001346768, intron 1 of 40)	MIR|SINE|MIR	3249	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
71261	chr14	105207371	105208380	+	0	NA	Intergenic	Intergenic	-26552	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
142819	chr20	16731451	16731750	+	0	NA	intron (NM_003092, intron 1 of 6)	MER113|DNA|hAT-Charlie	1574	NM_003092	6629		NM_003092	ENSG00000125870	SNRPB2	Msl1|U2B''	small nuclear ribonucleoprotein polypeptide B2	protein-coding
174873	chr4	48738901	48739100	+	0	NA	intron (NM_015030, intron 1 of 63)	L1MC1|LINE|L1	41279	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
75269	chr15	65030851	65030950	+	0	NA	Intergenic	AluSx|SINE|Alu	-1261	NM_139242	123263		NM_139242	ENSG00000103707	MTFMT	COXPD15|FMT1|MC1DN27	mitochondrial methionyl-tRNA formyltransferase	protein-coding
95166	chr17	35151131	35151250	+	0	NA	intron (NM_173167, intron 3 of 18)	LSU-rRNA_Hsa|rRNA|rRNA	2926	NM_173167	146862		NM_173167	ENSG00000141161	UNC45B	CMYA4|CTRCT43|MFM11|SMUNC45|UNC-45B|UNC45	unc-45 myosin chaperone B	protein-coding
180957	chr5	35657851	35658150	+	0	NA	intron (NM_144722, intron 7 of 9)	intron (NM_144722, intron 7 of 9)	40137	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
101072	chr17	64847751	64848280	+	0	NA	Intergenic	Intergenic	-10831	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
173926	chr4	25374121	25374380	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3013	NM_001286756	29945		NM_013367	ENSG00000053900	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
63182	chr13	113731671	113731900	+	0	NA	intron (NM_002929, intron 5 of 6)	intron (NM_002929, intron 5 of 6)	19304	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
130122	chr2	74557971	74558130	+	0	NA	TTS (NM_001197260)	TTS (NM_001197260)	3890	NM_001381	1796		NM_001381	ENSG00000115325	DOK1	P62DOK|pp62	docking protein 1	protein-coding
121727	chr19	47713151	47713780	+	0	NA	promoter-TSS (NM_014601)	promoter-TSS (NM_014601)	43	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
1606	chr1	3655921	3656180	+	0	NA	intron (NM_001204185, intron 1 of 12)	AluY|SINE|Alu	3485	NM_001204187	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
110439	chr19	1979601	1980100	+	0	NA	intron (NM_001319, intron 10 of 11)	CpG-13133	-25301	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
37922	chr11	34163301	34163860	+	0	NA	intron (NM_145804, intron 9 of 16)	intron (NM_145804, intron 9 of 16)	57951	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
115767	chr19	16337931	16340030	+	0	NA	Intergenic	Intergenic	14154	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
37893	chr11	34056351	34056700	+	0	NA	intron (NM_203364, intron 2 of 17)	intron (NM_203364, intron 2 of 17)	4794	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
160773	chr3	32780971	32781780	+	0	NA	Intergenic	CpG	-36622	NM_001039111	131405		NM_001039111	ENSG00000206557	TRIM71	HYC4|HYDCC1|LIN-41|LIN41	tripartite motif containing 71	protein-coding
145417	chr20	43187871	43188050	+	0	NA	intron (NM_007050, intron 1 of 30)	intron (NM_007050, intron 1 of 30)	1946	NM_133170	11122		NM_007050	ENSG00000196090	PTPRT	R-PTP-T|RPTP-rho|RPTPrho	protein tyrosine phosphatase receptor type T	protein-coding
180607	chr5	16463521	16463930	+	0	NA	exon (NM_033414, exon 2 of 6)	exon (NM_033414, exon 2 of 6)	2075	NM_033414	90441		NM_033414	ENSG00000173545	ZNF622	ZPR9	zinc finger protein 622	protein-coding
24422	chr1	243488601	243489150	+	0	NA	intron (NM_181690, intron 13 of 13)	intron (NM_181690, intron 13 of 13)	142699	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
202295	chr6	157212101	157212300	+	0	NA	Intergenic	Intergenic	111319	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
236733	chrX	78123321	78123650	+	0	NA	intron (NM_000291, intron 8 of 10)	intron (NM_000291, intron 8 of 10)	16165	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
80519	chr16	2757371	2758430	+	0	NA	exon (NM_016333, exon 4 of 15)	exon (NM_016333, exon 4 of 15)	5262	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
71796	chr15	21724301	21724500	+	0	NA	Intergenic	L1MA7|LINE|L1	-6093	NR_135695	102724760		NR_135695		LOC102724760	-	immunoglobulin heavy variable 1/OR15-1 pseudogene	pseudo
176701	chr4	101029001	101029500	+	0	NA	intron (NM_000944, intron 12 of 13)	intron (NM_000944, intron 12 of 13)	211622	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
1490	chr1	2757401	2757600	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	43368	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
20365	chr1	197922601	197923230	+	0	NA	intron (NM_020204, intron 3 of 4)	MIRc|SINE|MIR	5543	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
43946	chr11	93614321	93615100	+	0	NA	Intergenic	MIRb|SINE|MIR	-46972	NM_033395	85459		NM_033395	ENSG00000166004	CEP295	KIAA1731|SCKL11	centrosomal protein 295	protein-coding
125006	chr2	9544501	9544700	+	0	NA	intron (NM_001382778, intron 1 of 18)	AluSc|SINE|Alu	11230	NM_003183	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
70098	chr14	100212101	100212430	+	0	NA	Intergenic	Intergenic	-26879	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
36700	chr11	8870621	8871250	+	0	NA	promoter-TSS (NM_001376497)	promoter-TSS (NM_001376497)	-33	NM_001376497	6764		NM_005418	ENSG00000166444	DENND2B	HTS1|ST5|p126	DENN domain containing 2B	protein-coding
100074	chr17	58254571	58254730	+	0	NA	intron (NR_027647, intron 7 of 11)	MIRb|SINE|MIR	16066	NM_006151	4025		NM_006151	ENSG00000167419	LPO	SPO	lactoperoxidase	protein-coding
191718	chr6	13685621	13685880	+	0	NA	intron (NM_005493, intron 2 of 13)	AluSc|SINE|Alu	26085	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
208123	chr7	59535671	59535830	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2085573	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
126861	chr2	31958121	31958750	+	0	NA	intron (NM_001371918, intron 2 of 10)	intron (NM_001371918, intron 2 of 10)	52329	NM_001371915	51072		NM_015955	ENSG00000162959	MEMO1	C2orf4|CGI-27|MEMO|NS5ATP7	mediator of cell motility 1	protein-coding
131124	chr2	90383601	90383800	+	0	NA	Intergenic	Intergenic	-745793	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
21836	chr1	207346171	207346330	+	0	NA	intron (NM_001114752, intron 10 of 10)	L1MA4A|LINE|L1	24572	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
20390	chr1	198167101	198168930	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	11017	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
168568	chr3	148987471	148987750	+	0	NA	Intergenic	Intergenic	-3798	NM_001184721	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
15613	chr1	150615521	150616480	+	0	NA	Intergenic	L2b|LINE|L2	13133	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
54812	chr12	94674751	94675130	+	0	NA	Intergenic	L2a|LINE|L2	-24383	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
203808	chr7	1294801	1295780	+	0	NA	Intergenic	(GTGT)n|Simple_repeat|Simple_repeat	62418	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
181259	chr5	39219251	39219550	+	0	NA	intron (NM_001349333, intron 1 of 19)	intron (NM_001349333, intron 1 of 19)	163	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
53662	chr12	68375801	68376000	+	0	NA	Intergenic	Intergenic	-43486	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
89453	chr16	89009271	89009830	+	0	NA	Intergenic	Intergenic	-32343	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
227795	chr9	93139301	93139500	+	0	NA	Intergenic	L2a|LINE|L2	-5149	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
19842	chr1	182884701	182884900	+	0	NA	non-coding (NR_033302, exon 28 of 29)	non-coding (NR_033302, exon 28 of 29)	-45209	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
233196	chr9	137212551	137212850	+	0	NA	intron (NM_014434, intron 3 of 13)	intron (NM_014434, intron 3 of 13)	7000	NM_001144028	27158		NM_014434	ENSG00000188566	NDOR1	CIAE1|NR1|bA350O14.9	NADPH dependent diflavin oxidoreductase 1	protein-coding
195703	chr6	38704201	38704500	+	0	NA	Intergenic	Intergenic	-1205	NM_006708	2739		NM_006708	ENSG00000124767	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
52398	chr12	55740771	55740930	+	0	NA	Intergenic	Intergenic	-2272	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
209055	chr7	74760271	74760430	+	0	NA	3' UTR (NM_001518, exon 33 of 33)	3' UTR (NM_001518, exon 33 of 33)	-13612	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
178372	chr4	146486571	146487130	+	0	NA	intron (NR_133924, intron 4 of 9)	intron (NR_133924, intron 4 of 9)	35090	NM_001317816	84068		NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7|SSASKS	solute carrier family 10 member 7	protein-coding
133690	chr2	127106371	127107900	+	0	NA	promoter-TSS (NM_001320640)	promoter-TSS (NM_001320640)	19	NM_001320641	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
87278	chr16	70019551	70020250	+	0	NA	intron (NR_003610, intron 12 of 25)	AluSx1|SINE|Alu	-10446	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
198788	chr6	108902221	108902730	+	0	NA	intron (NM_001286609, intron 6 of 16)	intron (NM_001286609, intron 6 of 16)	21628	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
2933	chr1	11784921	11785580	+	0	NA	TTS (NM_001330358)	TTS (NM_001330358)	-5631	NR_126000	102724659		NR_126000	ENSG00000177553	C1orf167-AS1	-	C1orf167 antisense RNA 1	ncRNA
155329	chr22	38217471	38217950	+	0	NA	Intergenic	AluSx3|SINE|Alu	7010	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
74998	chr15	63940851	63941730	+	0	NA	intron (NR_169522, intron 3 of 11)	intron (NR_169522, intron 3 of 11)	13016	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
229698	chr9	124711651	124712380	+	0	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	18305	NR_029782	406956		NR_029782	ENSG00000207737	MIR181B2	MIRN181B2|mir-181b-2	microRNA 181b-2	ncRNA
170142	chr3	183435621	183435880	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-7481	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
67184	chr14	68823721	68823980	+	0	NA	Intergenic	Intergenic	-27607	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
133946	chr2	130563071	130563600	+	0	NA	Intergenic	Intergenic	-7494	NR_033930	646743		NR_033930	ENSG00000290610	PRSS40B	-	serine protease 40B (pseudogene)	pseudo
1000	chr1	1847051	1847650	+	0	NA	intron (NM_001282538, intron 1 of 9)	Tigger2|DNA|TcMar-Tigger	43737	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
195954	chr6	41940351	41941100	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	1083	NM_001760	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
114841	chr19	13832971	13834780	+	0	NA	TTS (NR_036515)	TTS (NR_036515)	2484	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
126955	chr2	35351821	35351950	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	-119520	NR_039629	100616475		NR_039629	ENSG00000265301	MIR548AD	-	microRNA 548ad	ncRNA
149074	chr21	15732271	15733070	+	0	NA	intron (NM_001352560, intron 1 of 23)	(TATTTAC)n|Simple_repeat|Simple_repeat	2688	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
48636	chr12	10392321	10392930	+	0	NA	intron (NM_001199805, intron 5 of 12)	intron (NM_001199805, intron 5 of 12)	-2584	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
91832	chr17	7190951	7191050	+	0	NA	intron (NR_135527, intron 20 of 20)	AluSq2|SINE|Alu	-11436	NM_001197216	432		NM_001671	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
50235	chr12	46237351	46238000	+	0	NA	intron (NM_001278387, intron 4 of 17)	intron (NM_001278387, intron 4 of 17)	28841	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
170099	chr3	183100901	183101700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1713	NR_120639	56922		NM_020166	ENSG00000078070	MCCC1	MCC-B|MCCA|MCCCalpha	methylcrotonyl-CoA carboxylase subunit 1	protein-coding
5926	chr1	26855821	26856300	+	0	NA	3' UTR (NM_032283, exon 8 of 8)	3' UTR (NM_032283, exon 8 of 8)	-7089	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
195604	chr6	37624951	37625680	+	0	NA	Intergenic	Intergenic	-69893	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
35445	chr11	1450801	1451730	+	0	NA	intron (NM_001256630, intron 14 of 19)	intron (NM_001256630, intron 14 of 19)	29621	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
126605	chr2	28786171	28786780	+	0	NA	intron (NM_206876, intron 6 of 8)	intron (NM_206876, intron 6 of 8)	-24359	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
130279	chr2	84877501	84877900	+	0	NA	intron (NM_001307978, intron 1 of 4)	intron (NM_001307978, intron 1 of 4)	3384	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
117727	chr19	29531171	29531330	+	0	NA	intron (NM_001384641, intron 4 of 4)	intron (NM_001384641, intron 4 of 4)	2350	NM_001384643	342865		NM_001146339	ENSG00000187135	VSTM2B	-	V-set and transmembrane domain containing 2B	protein-coding
61307	chr13	50284601	50284930	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	112747	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
200277	chr6	132748951	132749450	+	0	NA	intron (NM_078488, intron 7 of 7)	MLT1H|LTR|ERVL-MaLR	8704	NM_004665	8875		NM_004665	ENSG00000112303	VNN2	FOAP-4|GPI-80	vanin 2	protein-coding
81885	chr16	11682801	11683000	+	0	NA	intron (NR_136674, intron 8 of 8)	intron (NR_136674, intron 8 of 8)	14445	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
161672	chr3	43348471	43348880	+	0	NA	non-coding (NR_046757, exon 3 of 3)	non-coding (NR_046757, exon 3 of 3)	3287	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
715	chr1	1430671	1431400	+	0	NA	intron (NR_125994, intron 1 of 1)	intron (NR_125994, intron 1 of 1)	3538	NR_125996	102724312		NR_125994		LINC01770	-	long intergenic non-protein coding RNA 1770	ncRNA
33924	chr10	124604951	124605250	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-98928	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
129160	chr2	67396901	67398040	+	0	NA	exon (NM_019002, exon 1 of 6)	exon (NM_019002, exon 1 of 6)	137	NM_019002	54465		NM_019002	ENSG00000143971	ETAA1	ETAA16	ETAA1 activator of ATR kinase	protein-coding
149938	chr21	36317371	36317730	+	0	NA	Intergenic	L1M8|LINE|L1	-2639	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
14983	chr1	148043221	148043680	+	0	NA	Intergenic	Intergenic	-4534	NR_004426	26864		NR_004426	ENSG00000206585	RNVU1-7	RNU1-26P|RNU1-6|RNU1-6P|RNU1-9|RNU1-9P|RNVU1-9|vU1.7|vU1.9	RNA, variant U1 small nuclear 7	snRNA
199267	chr6	111859051	111859430	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	13831	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
7694	chr1	35936221	35936680	+	0	NA	intron (NM_177422, intron 1 of 16)	AluSq2|SINE|Alu	5345	NM_177422	192669		NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
229666	chr9	124357951	124358250	+	0	NA	non-coding (NR_027406, exon 1 of 1)	non-coding (NR_027406, exon 1 of 1)	4627	NR_027406	100129034		NR_027406		LOC100129034	-	uncharacterized LOC100129034	ncRNA
148228	chr20	63614121	63614680	+	0	NA	intron (NM_012384, intron 2 of 9)	LTR13|LTR|ERVK	12701	NM_012384	26205		NM_012384	ENSG00000101216	GMEB2	GMEB-2|P79PIF|PIF79	glucocorticoid modulatory element binding protein 2	protein-coding
64569	chr14	24673171	24674090	+	0	NA	Intergenic	Intergenic	-39440	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
93598	chr17	19133271	19133430	+	0	NA	intron (NM_001129778, intron 2 of 3)	intron (NM_001129778, intron 2 of 3)	5761	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
231092	chr9	129797201	129797750	+	0	NA	Intergenic	Charlie2a|DNA|hAT-Charlie	-5668	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
105965	chr18	5159051	5159550	+	0	NA	intron (NM_001330553, intron 1 of 1)	intron (NM_001330553, intron 1 of 1)	37957	NM_001145194	642597		NM_001145194	ENSG00000231824	AKAIN1	C18orf42	A-kinase anchor inhibitor 1	protein-coding
39180	chr11	57432771	57432930	+	0	NA	Intergenic	Intergenic	-5270	NM_017611	29015		NM_014096	ENSG00000134802	SLC43A3	EEG1|ENBT1|FOAP-13|PRO1659|SEEEG-1	solute carrier family 43 member 3	protein-coding
176639	chr4	99884901	99885300	+	0	NA	intron (NM_021970, intron 5 of 6)	intron (NM_021970, intron 5 of 6)	9327	NM_021970	8649		NM_021970	ENSG00000109270	LAMTOR3	MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding
218675	chr8	58220751	58221250	+	0	NA	Intergenic	Intergenic	51101	NR_105005	101929528		NR_105005	ENSG00000253281	LOC101929528	-	uncharacterized LOC101929528	ncRNA
172095	chr4	1052371	1052530	+	0	NA	Intergenic	Intergenic	39986	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
211478	chr7	105111971	105112480	+	0	NA	exon (NM_018682, exon 26 of 26)	exon (NM_018682, exon 26 of 26)	98020	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
12522	chr1	108488921	108489380	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	38807	NM_001143988	653149		NM_001143987	ENSG00000186086	NBPF6	-	NBPF member 6	protein-coding
33677	chr10	119894051	119894150	+	0	NA	intron (NR_037771, intron 1 of 17)	MIR|SINE|MIR	1370	NM_007190	11196		NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A|iPLA1A|iPLA1beta	SEC23 interacting protein	protein-coding
56640	chr12	118376021	118377180	+	0	NA	promoter-TSS (NM_022491)	promoter-TSS (NM_022491)	45	NM_022491	64426		NM_022491	ENSG00000111707	SUDS3	SAP45|SDS3	SDS3 homolog, SIN3A corepressor complex component	protein-coding
183081	chr5	73751371	73751730	+	0	NA	intron (NM_001177693, intron 3 of 35)	intron (NM_001177693, intron 3 of 35)	-61996	NM_001244364	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
11126	chr1	86499951	86500280	+	0	NA	3' UTR (NM_001285, exon 14 of 14)	3' UTR (NM_001285, exon 14 of 14)	31188	NM_001285	1179		NM_001285	ENSG00000016490	CLCA1	CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1	chloride channel accessory 1	protein-coding
219443	chr8	72536921	72537250	+	0	NA	promoter-TSS (NM_004770)	promoter-TSS (NM_004770)	-140	NM_004770	9312		NM_004770	ENSG00000182674	KCNB2	KV2.2	potassium voltage-gated channel subfamily B member 2	protein-coding
132275	chr2	104853401	104854500	+	0	NA	promoter-TSS (NR_131233)	promoter-TSS (NR_131233)	-165	NM_006236	5455		NM_006236	ENSG00000198914	POU3F3	BRN1|OTF8|SNIBFIS|brain-1|oct-8	POU class 3 homeobox 3	protein-coding
167291	chr3	128649951	128651780	+	0	NA	promoter-TSS (NM_002950)	promoter-TSS (NM_002950)	-47	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
170393	chr3	184875071	184875230	+	0	NA	intron (NM_001349295, intron 20 of 46)	intron (NM_001349295, intron 20 of 46)	62643	NR_146115	23355		NM_015303	ENSG00000156931	VPS8	KIAA0804	VPS8 subunit of CORVET complex	protein-coding
231149	chr9	129870371	129870750	+	0	NA	TTS (NR_106914)	TTS (NR_106914)	955	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
224417	chr9	15134971	15135500	+	0	NA	Intergenic	Intergenic	114983	NM_001168342	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
64738	chr14	34543821	34544380	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2614	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
101147	chr17	65050771	65050930	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	4924	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
10083	chr1	58816121	58817050	+	0	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	31434	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
32692	chr10	103974171	103975380	+	0	NA	intron (NM_014720, intron 1 of 18)	AluY|SINE|Alu	7635	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
184312	chr5	96895771	96896750	+	0	NA	intron (NM_001130140, intron 7 of 18)	intron (NM_001130140, intron 7 of 18)	19760	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
142602	chr20	5586721	5587350	+	0	NA	intron (NM_019593, intron 4 of 19)	intron (NM_019593, intron 4 of 19)	23971	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
100938	chr17	64479351	64479530	+	0	NA	intron (NM_007215, intron 7 of 7)	AluSx3|SINE|Alu	17614	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
51044	chr12	49777271	49777430	+	0	NA	Intergenic	AluSx1|SINE|Alu	35541	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
201997	chr6	152503771	152503930	+	0	NA	intron (NM_033071, intron 9 of 145)	Kanga2_a|DNA|TcMar-Tc2	123320	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
94847	chr17	31496271	31496430	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	8242	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
131999	chr2	100582571	100582730	+	0	NA	Intergenic	AluYh3a3|SINE|Alu	19657	NM_024065	79031		NM_024065	ENSG00000115539	PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin like 3	protein-coding
196982	chr6	53191801	53192430	+	0	NA	Intergenic	AluSq|SINE|Alu	-43274	NM_003643	8521		NM_003643	ENSG00000137270	GCM1	GCMA|hGCMa	glial cells missing transcription factor 1	protein-coding
105851	chr18	3015201	3016050	+	0	NA	Intergenic	L2|LINE|L2	-2481	NM_001375808	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
33368	chr10	117284971	117285130	+	0	NA	exon (NM_173791, exon 5 of 5)	exon (NM_173791, exon 5 of 5)	43936	NM_003054	6571		NM_003054	ENSG00000165646	SLC18A2	PKDYS2|SVAT|SVMT|VAT2|VMAT2	solute carrier family 18 member A2	protein-coding
224591	chr9	20335751	20336200	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	75263	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
143364	chr20	26207951	26208530	+	0	NA	promoter-TSS (NR_030386).2	promoter-TSS (NR_030386).2	38	NR_030386	724033		NR_030386	ENSG00000284419	MIR663A	MIR663|MIRN663|hsa-mir-663|hsa-mir-663a|mir-663a	microRNA 663a	ncRNA
110876	chr19	2631101	2632030	+	0	NA	TTS (NR_107004)	TTS (NR_107004)	850	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
16381	chr1	154390351	154391180	+	0	NA	Intergenic	AluSz|SINE|Alu	-14578	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
163918	chr3	52650271	52650630	+	0	NA	intron (NM_181042, intron 8 of 29)	intron (NM_181042, intron 8 of 29)	35149	NM_001350074	55193		NM_018313	ENSG00000163939	PBRM1	BAF180|PB1|RCC|SMARCH1	polybromo 1	protein-coding
196213	chr6	42777171	42778030	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	-5896	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
155023	chr22	37427121	37428130	+	0	NA	promoter-TSS (NM_052906)	promoter-TSS (NM_052906)	-146	NM_052906	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
52156	chr12	54279051	54280100	+	0	NA	TTS (NR_157844)	TTS (NR_157844)	547	NM_012117	23468		NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A|HP1alpha	chromobox 5	protein-coding
154425	chr22	35341301	35341850	+	0	NA	intron (NR_156428, intron 11 of 13)	intron (NR_156428, intron 11 of 13)	-4776	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
142952	chr20	19327551	19327650	+	0	NA	intron (NM_020689, intron 2 of 16)	LTR101_Mam|LTR|ERVL	-43004	NR_024564	100130264		NR_024564	ENSG00000179447	SLC24A3-AS1	-	SLC24A3 antisense RNA 1	ncRNA
168596	chr3	149131551	149132350	+	0	NA	intron (NM_001308258, intron 1 of 15)	Tigger1|DNA|TcMar-Tigger	2312	NM_032383	84343		NM_032383	ENSG00000163755	HPS3	BLOC2S1|SUTAL	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding
175211	chr4	56759471	56759630	+	0	NA	Intergenic	MER41B|LTR|ERV1	61923	NR_073419	6691		NM_021114	ENSG00000128040	SPINK2	HUSI-II|SPGF29	serine peptidase inhibitor Kazal type 2	protein-coding
8335	chr1	40175021	40175480	+	0	NA	intron (NM_012421, intron 1 of 7)	intron (NM_012421, intron 1 of 7)	13863	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
8283	chr1	39995851	39996530	+	0	NA	Intergenic	Zaphod2|DNA|hAT-Tip100	41045	NM_001349822	84879		NM_032793	ENSG00000168389	MFSD2A	HsMFSD2A|MCPH15|MFSD2|NEDMISBA|NLS1|SLC59A1	MFSD2 lysolipid transporter A, lysophospholipid	protein-coding
10276	chr1	64824001	64824650	+	0	NA	intron (NM_001366165, intron 11 of 11)	intron (NM_001366165, intron 11 of 11)	79250	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
232451	chr9	136131071	136131730	+	0	NA	Intergenic	Intergenic	12380	NR_165240	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
51552	chr12	52542921	52543230	+	0	NA	TTS (NM_033448)	TTS (NM_033448)	10070	NM_033448	112802		NM_033448	ENSG00000139648	KRT71	HYPT13|K6IRS1|KRT6IRS|KRT6IRS1	keratin 71	protein-coding
183200	chr5	76082721	76083530	+	0	NA	promoter-TSS (NM_001297716)	promoter-TSS (NM_001297716)	-258	NM_001297716	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
233168	chr9	137181501	137181950	+	0	NA	exon (NM_013366, exon 7 of 13)	exon (NM_013366, exon 7 of 13)	6835	NM_013366	29882		NM_013366	ENSG00000176248	ANAPC2	APC2	anaphase promoting complex subunit 2	protein-coding
187421	chr5	142003721	142004180	+	0	NA	intron (NM_005471, intron 5 of 6)	intron (NM_005471, intron 5 of 6)	9077	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
79873	chr16	1528671	1528830	+	0	NA	promoter-TSS (NM_001256541)	promoter-TSS (NM_001256541)	72	NM_001256541	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
61936	chr13	78604401	78604600	+	0	NA	promoter-TSS (NM_006237)	promoter-TSS (NM_006237)	-948	NM_006237	5457		NM_006237	ENSG00000152192	POU4F1	ATITHS|BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
23433	chr1	228409321	228409580	+	0	NA	intron (NM_001134855, intron 4 of 5)	intron (NM_001134855, intron 4 of 5)	-2615	NM_145214	81559		NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
210824	chr7	100890941	100891750	+	0	NA	intron (NR_160407, intron 2 of 3)	intron (NR_160407, intron 2 of 3)	-1630	NM_001015072	402682		NM_001015072	ENSG00000176125	UFSP1	UFSP	UFM1 specific peptidase 1 (inactive)	protein-coding
98898	chr17	48587571	48588680	+	0	NA	intron (NM_001384749, intron 1 of 4)	intron (NM_001384749, intron 1 of 4)	2116	NM_001384750	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
68619	chr14	89641071	89641950	+	0	NA	Intergenic	Intergenic	-22345	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
130246	chr2	84843851	84844750	+	0	NA	intron (NM_001307978, intron 2 of 4)	THE1B|LTR|ERVL-MaLR	36784	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
44681	chr11	111222521	111223180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-22875	NM_198498	341032		NM_198498	ENSG00000150750	POU2AF2	C11orf53|OCA-T1|OCAT1	POU class 2 homeobox associating factor 2	protein-coding
40355	chr11	63972371	63973100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1885	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
229283	chr9	120711671	120712650	+	0	NA	intron (NM_001080497, intron 1 of 5)	AluJb|SINE|Alu	2310	NM_001080497	1955		NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
62217	chr13	98484471	98485500	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	37140	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
115748	chr19	16316601	16316980	+	0	NA	Intergenic	Intergenic	-8036	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
72013	chr15	28021851	28021950	+	0	NA	intron (NM_000275, intron 6 of 23)	intron (NM_000275, intron 6 of 23)	77415	NM_000275	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
235359	chrX	44744871	44745030	+	0	NA	Intergenic	Intergenic	-99071	NM_022076	63904		NM_022076	ENSG00000189037	DUSP21	LMWDSP21	dual specificity phosphatase 21	protein-coding
229912	chr9	126613801	126614400	+	0	NA	5' UTR (NM_001174146, exon 1 of 8)	5' UTR (NM_001174146, exon 1 of 8)	172	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
105357	chr17	82642421	82642680	+	0	NA	intron (NM_019613, intron 2 of 9)	MER21A|LTR|ERVL	5894	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
77210	chr15	80988371	80988730	+	0	NA	intron (NR_126327, intron 1 of 4)	intron (NR_126327, intron 1 of 4)	1269	NR_126327	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
50313	chr12	46517171	46517730	+	0	NA	intron (NR_125380, intron 3 of 3)	intron (NR_125380, intron 3 of 3)	133343	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
24920	chr10	1068871	1069230	+	0	NA	intron (NM_014023, intron 1 of 13)	L1MB8|LINE|L1	-12346	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
98191	chr17	46115851	46116150	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	76782	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
198294	chr6	100228401	100229400	+	0	NA	Intergenic	Intergenic	-234662	NM_032503	84539		NM_032503	ENSG00000152034	MCHR2	GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT	melanin concentrating hormone receptor 2	protein-coding
11058	chr1	85049621	85050150	+	0	NA	Intergenic	LTR21A|LTR|ERV1	-1345	NM_001253693	55283		NM_018298	ENSG00000055732	MCOLN3	TRP-ML3|TRPML3	mucolipin TRP cation channel 3	protein-coding
206919	chr7	38217571	38218130	+	0	NA	intron (NM_032016, intron 6 of 8)	intron (NM_032016, intron 6 of 8)	39605	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
220599	chr8	100911201	100911830	+	0	NA	Intergenic	Intergenic	39056	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
136917	chr2	189698271	189698650	+	0	NA	intron (NM_001378068, intron 7 of 22)	intron (NM_001378068, intron 7 of 22)	22475	NM_144708	150709		NM_144708	ENSG00000151687	ANKAR	-	ankyrin and armadillo repeat containing	protein-coding
10756	chr1	76867971	76868830	+	0	NA	intron (NM_030965, intron 1 of 4)	CpG	920	NM_030965	81849		NM_030965	ENSG00000117069	ST6GALNAC5	SIAT7-E|SIAT7E|ST6GalNAcV	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
37420	chr11	17287171	17287830	+	0	NA	intron (NM_001352666, intron 3 of 13)	AluSx3|SINE|Alu	10530	NM_001352672	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
56011	chr12	110338801	110339050	+	0	NA	intron (NM_170665, intron 11 of 19)	L2a|LINE|L2	57678	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
203977	chr7	1663971	1664130	+	0	NA	Intergenic	Intergenic	-24069	NM_001128636	392617		NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
133979	chr2	130776421	130776750	+	0	NA	Intergenic	L1MB4|LINE|L1	20241	NM_001105195	205147		NM_152698	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
3245	chr1	13804251	13804550	+	0	NA	intron (NM_012231, intron 8 of 9)	intron (NM_012231, intron 8 of 9)	54985	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
25908	chr10	11298021	11298280	+	0	NA	intron (NM_001326330, intron 9 of 12)	intron (NM_001326330, intron 9 of 12)	46524	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70328	chr14	101837771	101838150	+	0	NA	intron (NM_001352916, intron 2 of 13)	MIR|SINE|MIR	28097	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
129019	chr2	64879501	64879700	+	0	NA	Intergenic	L2|LINE|L2	-15969	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
227822	chr9	93317751	93318050	+	0	NA	exon (NM_001282394, exon 30 of 30)	exon (NM_001282394, exon 30 of 30)	28403	NR_166069	445577		NM_001098808		FAM120A2P	C9orf129|bA165J3.3	family with sequence similarity 120A2, pseudogene	pseudo
213498	chr7	139057201	139057550	+	0	NA	intron (NM_020119, intron 9 of 12)	L1MC5a|LINE|L1	-13218	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
97573	chr17	44093001	44093630	+	0	NA	exon (NM_001015053, exon 5 of 27)	exon (NM_001015053, exon 5 of 27)	22404	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
123729	chr19	55056951	55057450	+	0	NA	intron (NM_001145971, intron 2 of 6).10	L1MB7|LINE|L1	5948	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
112845	chr19	7541001	7541480	+	0	NA	intron (NM_006702, intron 10 of 34)	intron (NM_006702, intron 10 of 34)	5523	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
106012	chr18	7964701	7965300	+	0	NA	intron (NM_001378146, intron 3 of 29)	intron (NM_001378146, intron 3 of 29)	18125	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
233072	chr9	137085861	137088250	+	0	NA	promoter-TSS (NR_045720)	promoter-TSS (NR_045720)	70	NR_045721	11253		NM_016219	ENSG00000177239	MAN1B1	ERMAN1|ERManI|MANA-ER|MRT15	mannosidase alpha class 1B member 1	protein-coding
49310	chr12	21503071	21503230	+	0	NA	intron (NM_016072, intron 1 of 4)	intron (NM_016072, intron 1 of 4)	1361	NM_016072	51026		NM_016072	ENSG00000111711	GOLT1B	CGI-141|GCT2|GOT1|GOT1B|YMR292W	golgi transport 1B	protein-coding
139963	chr2	230872601	230873530	+	0	NA	intron (NM_001012514, intron 1 of 4)	intron (NM_001012514, intron 1 of 4)	8115	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
112370	chr19	5987171	5988150	+	0	NA	intron (NR_046376, intron 1 of 3)	intron (NR_046376, intron 1 of 3)	9257	NR_046376	100128568		NR_046376	ENSG00000266983	RANBP3-DT	-	RANBP3 divergent transcript	ncRNA
20020	chr1	185305421	185305780	+	0	NA	exon (NM_006469, exon 8 of 15)	exon (NM_006469, exon 8 of 15)	11643	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
82100	chr16	14519251	14519350	+	0	NA	intron (NM_002582, intron 21 of 23)	L1MC5|LINE|L1	110960	NM_001134477	5073		NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding
52028	chr12	53997171	53998380	+	0	NA	promoter-TSS (NR_047505)	promoter-TSS (NR_047505)	-990	NR_047505	100874364		NR_047505	ENSG00000250133	HOXC-AS2	-	HOXC cluster antisense RNA 2	ncRNA
82468	chr16	17105071	17105630	+	0	NA	3' UTR (NM_022166, exon 12 of 12)	3' UTR (NM_022166, exon 12 of 12)	-29154	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
163692	chr3	52255521	52255930	+	0	NA	3' UTR (NM_025222, exon 9 of 9)	3' UTR (NM_025222, exon 9 of 9)	9558	NM_001122870	132160		NM_144641	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein-coding
39833	chr11	62123501	62124680	+	0	NA	promoter-TSS (NM_020238)	promoter-TSS (NM_020238)	79	NM_001040694	3619		NM_020238	ENSG00000149503	INCENP	-	inner centromere protein	protein-coding
65101	chr14	41609821	41610080	+	0	NA	intron (NM_001346173, intron 1 of 4)	intron (NM_001346173, intron 1 of 4)	3094	NM_001330106	145581		NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
61109	chr13	48486771	48487350	+	0	NA	Intergenic	MSTA1|LTR|ERVL-MaLR	-42391	NM_005767	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
183814	chr5	83071771	83072380	+	0	NA	intron (NM_174909, intron 1 of 3)	intron (NM_174909, intron 1 of 3)	5319	NM_174909	153339		NM_174909	ENSG00000174695	TMEM167A	TMEM167|kish	transmembrane protein 167A	protein-coding
114223	chr19	11464151	11464250	+	0	NA	intron (NM_001420, intron 3 of 6)	AluJb|SINE|Alu	16846	NM_032281	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
103238	chr17	77504371	77504530	+	0	NA	Intergenic	(CCTCC)n|Simple_repeat|Simple_repeat	-22551	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
174091	chr4	30719721	30719980	+	0	NA	promoter-TSS (NM_002589)	promoter-TSS (NM_002589)	-519	NM_002589	5099		NM_002589	ENSG00000169851	PCDH7	BH-Pcdh|BHPCDH|PPP1R120	protocadherin 7	protein-coding
78947	chr15	101282671	101283030	+	0	NA	intron (NM_003090, intron 8 of 8)	Charlie1a|DNA|hAT-Charlie	-5365	NM_203472	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
129313	chr2	68715351	68715980	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-19146	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
160218	chr3	23941401	23941880	+	0	NA	intron (NM_001377380, intron 1 of 4)	intron (NM_001377380, intron 1 of 4)	-3646	NM_005126	9975		NM_005126	ENSG00000174738	NR1D2	BD73|EAR-1R|REVERBB|REVERBbeta|RVR	nuclear receptor subfamily 1 group D member 2	protein-coding
104758	chr17	81693021	81693380	+	0	NA	promoter-TSS (NR_106844)	promoter-TSS (NR_106844)	-557	NR_106844	102465471		NR_106844	ENSG00000277784	MIR6786	hsa-mir-6786	microRNA 6786	ncRNA
213466	chr7	138980001	138980200	+	0	NA	intron (NM_001164665, intron 1 of 19)	intron (NM_001164665, intron 1 of 19)	1289	NM_001164665	57670		NM_020910	ENSG00000122778	KIAA1549	RP86	KIAA1549	protein-coding
180650	chr5	17521871	17522100	+	0	NA	Intergenic	Intergenic	-29909	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
144862	chr20	36901751	36902130	+	0	NA	intron (NM_001363733, intron 13 of 15)	L2|LINE|L2	25802	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
114347	chr19	12194751	12195880	+	0	NA	intron (NR_104179, intron 1 of 1)	CpG	300	NR_104179	100289333		NR_104179		LOC100289333	-	uncharacterized LOC100289333	pseudo
208770	chr7	73554351	73555150	+	0	NA	intron (NM_001301061, intron 1 of 6)	AluSz|SINE|Alu	2486	NR_036682	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
134271	chr2	135741421	135743100	+	0	NA	non-coding (NR_163478, exon 1 of 1)	non-coding (NR_163478, exon 1 of 1)	384	NR_163478	107985946		NM_001365239		LOC107985946	-	uncharacterized LOC107985946	ncRNA
74064	chr15	52566251	52566350	+	0	NA	intron (NM_001306191, intron 3 of 5)	AluSz6|SINE|Alu	2532	NM_001330309	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
223643	chr8	144342901	144343380	+	0	NA	Intergenic	Intergenic	-6658	NM_031309	83482		NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding
110849	chr19	2579051	2579750	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-51315	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
112527	chr19	6514921	6515280	+	0	NA	Intergenic	Intergenic	-12252	NM_001289123	10382		NM_006087	ENSG00000104833	TUBB4A	DYT4|TUBB4|beta-5	tubulin beta 4A class IVa	protein-coding
65808	chr14	54782951	54783050	+	0	NA	intron (NM_015589, intron 11 of 12)	intron (NM_015589, intron 11 of 12)	28167	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
41919	chr11	67284921	67285380	+	0	NA	exon (NM_001619, exon 20 of 21)	exon (NM_001619, exon 20 of 21)	-4153	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
45911	chr11	120613151	120613250	+	0	NA	intron (NM_001282470, intron 1 of 19)	MIRb|SINE|MIR	48764	NM_001282470	2900		NM_014619	ENSG00000149403	GRIK4	EAA1|GRIK|GluK4|GluK4-2|KA1	glutamate ionotropic receptor kainate type subunit 4	protein-coding
79001	chr15	101979571	101980500	+	0	NA	promoter-TSS (NR_051985)	promoter-TSS (NR_051985)	-942	NR_034090	100288486		NR_034090	ENSG00000290824	DDX11L9	-	DEAD/H-box helicase 11 like 9 (pseudogene)	pseudo
31987	chr10	100827851	100828190	+	0	NA	3' UTR (NM_000278, exon 10 of 10)	3' UTR (NM_000278, exon 10 of 10)	82438	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
193326	chr6	30170021	30170800	+	0	NA	intron (NM_033229, intron 4 of 6).6	intron (NM_033229, intron 4 of 6).6	6864	NM_033229	89870		NM_033229	ENSG00000204610	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
180900	chr5	34185451	34185550	+	0	NA	intron (NR_146599, intron 2 of 11)	Tigger17a|DNA|TcMar-Tigger	-4081	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
125494	chr2	12513401	12513800	+	0	NA	intron (NR_110196, intron 4 of 5)	MLT2B1|LTR|ERVL	-203272	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
196495	chr6	43637401	43637600	+	0	NA	intron (NM_014628, intron 2 of 2)	AluSx|SINE|Alu	1660	NM_014628	9587		NM_014628	ENSG00000124688	MAD2L1BP	CMT2|p31comet	MAD2L1 binding protein	protein-coding
235053	chrX	40110651	40110750	+	0	NA	intron (NM_001123384, intron 1 of 13)	(T)n|Simple_repeat|Simple_repeat	-12742	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
231176	chr9	129899971	129900130	+	0	NA	exon (NM_015033, exon 15 of 17)	exon (NM_015033, exon 15 of 17)	30445	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
234455	chrX	17655621	17656380	+	0	NA	intron (NM_001291868, intron 1 of 7)	CpG	20500	NM_001291868	4810		NM_198270	ENSG00000188158	NHS	CTRCT40|CXN|SCML1	NHS actin remodeling regulator	protein-coding
126367	chr2	27440501	27441100	+	0	NA	intron (NM_001321361, intron 14 of 18)	intron (NM_001321361, intron 14 of 18)	-1566	NM_001168364	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
96950	chr17	42189001	42189200	+	0	NA	TTS (NM_001142623)	TTS (NM_001142623)	-3648	NM_001524	3060		NM_001524	ENSG00000161610	HCRT	NRCLP1|OX|PPOX	hypocretin neuropeptide precursor	protein-coding
64820	chr14	35044421	35044680	+	0	NA	promoter-TSS (NM_001079519)	promoter-TSS (NM_001079519)	-357	NM_001079519	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
152421	chr22	20578621	20578880	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	70703	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
166809	chr3	122598421	122598680	+	0	NA	intron (NM_001113523, intron 1 of 11)	MLT1F|LTR|ERVL-MaLR	-17065	NM_152615	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
131670	chr2	97696921	97697600	+	0	NA	intron (NM_001351368, intron 5 of 7)	intron (NM_001351368, intron 5 of 7)	-16316	NM_001079	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
200026	chr6	129672801	129673630	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	36962	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
120188	chr19	42273521	42273780	+	0	NA	exon (NM_001304815, exon 2 of 21)	exon (NM_001304815, exon 2 of 21)	4398	NM_001379482	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
3776	chr1	16693671	16694580	+	0	NA	intron (NR_026567, intron 10 of 10)	CpG	12870	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
73637	chr15	44671901	44672650	+	0	NA	intron (NM_001330283, intron 5 of 14)	intron (NM_001330283, intron 5 of 14)	4613	NM_001330283	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
239362	chrY	19856771	19856930	+	0	NA	Intergenic	L1PA14|LINE|L1	-111911	NM_001146705	8284		NM_004653	ENSG00000012817	KDM5D	HY|HYA|JARID1D|SMCY	lysine demethylase 5D	protein-coding
87758	chr16	75249751	75250250	+	0	NA	intron (NM_001170715, intron 1 of 6)	MIR1_Amn|SINE|MIR	1624	NM_014567	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
70964	chr14	104692921	104693400	+	0	NA	intron (NM_032714, intron 1 of 4)	intron (NM_032714, intron 1 of 4)	3542	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
69424	chr14	94073801	94074080	+	0	NA	intron (NM_020414, intron 2 of 8).2	AluY|SINE|Alu	7262	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
83293	chr16	24115771	24116130	+	0	NA	intron (NM_212535, intron 8 of 16)	AluY|SINE|Alu	-87166	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
222595	chr8	141003801	141004280	+	0	NA	Intergenic	AluY|SINE|Alu	-1961	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
142420	chr20	3897401	3898230	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluSz|SINE|Alu	7999	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
199139	chr6	111718771	111719130	+	0	NA	intron (NM_001370529, intron 2 of 11)	intron (NM_001370529, intron 2 of 11)	40181	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
40406	chr11	64067521	64068180	+	0	NA	intron (NM_001384466, intron 1 of 2)	intron (NM_001384466, intron 1 of 2)	31168	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
223744	chr8	144507871	144509300	+	0	NA	promoter-TSS (NR_130120)	promoter-TSS (NR_130120)	-451	NR_130120	113655		NM_138431	ENSG00000167700	MFSD3	SLC33A2	major facilitator superfamily domain containing 3	protein-coding
15134	chr1	148751571	148752080	+	0	NA	non-coding (NR_104005, exon 1 of 1).2	non-coding (NR_104005, exon 1 of 1).2	3051	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
89847	chr16	89595321	89595650	+	0	NA	exon (NM_014427, exon 16 of 17)	exon (NM_014427, exon 16 of 17)	-17823	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
26423	chr10	17228001	17228800	+	0	NA	5' UTR (NM_003380, exon 1 of 10)	5' UTR (NM_003380, exon 1 of 10)	159	NM_003380	7431		NM_003380	ENSG00000026025	VIM	-	vimentin	protein-coding
172478	chr4	2064401	2065000	+	0	NA	3' UTR (NM_178557, exon 3 of 3)	3' UTR (NM_178557, exon 3 of 3)	5373	NM_178557	339983		NM_178557	ENSG00000185818	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8 like	protein-coding
211095	chr7	102498171	102498330	+	0	NA	intron (NM_001367767, intron 8 of 20)	MER53|DNA|hAT	-19328	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
58920	chr13	19746601	19746800	+	0	NA	intron (NM_001354909, intron 4 of 8)	AluSz6|SINE|Alu	36245	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
74916	chr15	63670951	63671050	+	0	NA	intron (NM_003922, intron 39 of 77)	AluSp|SINE|Alu	-70173	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
205711	chr7	23460471	23461030	+	0	NA	intron (NM_006547, intron 2 of 14)	AluSx|SINE|Alu	9741	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
38508	chr11	45885051	45886100	+	0	NA	promoter-TSS (NM_005456)	promoter-TSS (NM_005456)	-76	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
27226	chr10	29304601	29304900	+	0	NA	intron (NM_032517, intron 3 of 4)	intron (NM_032517, intron 3 of 4)	15680	NM_032517	84569		NM_032517	ENSG00000120563	LYZL1	KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1	lysozyme like 1	protein-coding
123296	chr19	53560921	53561230	+	0	NA	intron (NM_001317116, intron 2 of 4)	AluJo|SINE|Alu	5768	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
90580	chr17	1560151	1560450	+	0	NA	intron (NM_006224, intron 1 of 11)	intron (NM_006224, intron 1 of 11)	2492	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
49411	chr12	22629301	22629500	+	0	NA	intron (NM_001039481, intron 1 of 2)	intron (NM_001039481, intron 1 of 2)	4229	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
26375	chr10	16777351	16777880	+	0	NA	intron (NM_012425, intron 3 of 8)	intron (NM_012425, intron 3 of 8)	39809	NM_012425	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
4248	chr1	19599051	19599300	+	0	NA	intron (NM_001204089, intron 1 of 3)	AluJb|SINE|Alu	2196	NM_001204088	100532736		NM_001204088	ENSG00000158747	MICOS10-NBL1	C1orf151-NBL1|DAN|DAND1|MINOS1-NBL1|NBL1	MICOS10-NBL1 readthrough	protein-coding
187563	chr5	142787921	142788180	+	0	NA	intron (NM_001349547, intron 1 of 21)	AluSz|SINE|Alu	16823	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
233549	chrX	255901	256300	+	0	NA	Intergenic	CpG	-20256	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228349	chr9	99018751	99019250	+	0	NA	intron (NM_001855, intron 11 of 41)	GA-rich|Low_complexity|Low_complexity	75093	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
103547	chr17	78663471	78663630	+	0	NA	Intergenic	L1M1|LINE|L1	-31493	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
112272	chr19	5805781	5806450	+	0	NA	intron (NM_004558, intron 1 of 2)	intron (NM_004558, intron 1 of 2)	1048	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
51723	chr12	53214521	53215050	+	0	NA	intron (NM_001042728, intron 3 of 7)	(CCCCAG)n|Simple_repeat|Simple_repeat	5577	NM_001042728	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
7862	chr1	36377551	36378830	+	0	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	7734	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
32999	chr10	110565951	110566250	+	0	NA	Intergenic	AluJr|SINE|Alu	-1595	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
215264	chr7	157003221	157003530	+	0	NA	Intergenic	CpG	-2932	NR_147077	105375606		NR_147077	ENSG00000235029	MNX1-AS2	-	MNX1 antisense RNA 2	ncRNA
238672	chrX	154033471	154033830	+	0	NA	intron (NM_001110792, intron 1 of 2)	intron (NM_001110792, intron 1 of 2)	-13661	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
125502	chr2	12704351	12704450	+	0	NA	Intergenic	Intergenic	-12472	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
177826	chr4	124262351	124262530	+	0	NA	Intergenic	Intergenic	295994	NR_110838	101927087		NR_110838	ENSG00000261083	LINC02516	-	long intergenic non-protein coding RNA 2516	ncRNA
221224	chr8	121260921	121261280	+	0	NA	Intergenic	Intergenic	-378246	NR_002835	594842		NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
40534	chr11	64300701	64302400	+	0	NA	intron (NR_133662, intron 8 of 10)	AluSz|SINE|Alu	1192	NM_001039496	25858		NM_001039496	ENSG00000219435	CATSPERZ	C11orf20|TEX40	catsper channel auxiliary subunit zeta	protein-coding
51188	chr12	50314801	50315030	+	0	NA	Intergenic	Intergenic	-31395	NM_001113546	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
70016	chr14	100084721	100085000	+	0	NA	intron (NM_016337, intron 2 of 13)	intron (NM_016337, intron 2 of 13)	19438	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
236033	chrX	55396921	55397400	+	0	NA	Intergenic	L1PA5|LINE|L1	-54335	NR_130469	100847061		NR_130469	ENSG00000266328	MIR4536-2	-	microRNA 4536-2	ncRNA
162840	chr3	49280571	49280930	+	0	NA	exon (NM_003363, exon 20 of 22)	exon (NM_003363, exon 20 of 22)	-3518	NM_198562	375341		NM_198562	ENSG00000188315	C3orf62	MAPS	chromosome 3 open reading frame 62	protein-coding
154139	chr22	31244771	31245330	+	0	NA	intron (NM_005569, intron 2 of 15)	MIR|SINE|MIR	-3334	NM_016733	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
137391	chr2	196220471	196220950	+	0	NA	intron (NM_001348768, intron 25 of 28)	intron (NM_001348768, intron 25 of 28)	-39314	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
97222	chr17	42786151	42786450	+	0	NA	intron (NM_032387, intron 6 of 18)	intron (NM_032387, intron 6 of 18)	5690	NM_032387	65266		NM_032387	ENSG00000126562	WNK4	PHA2B|PRKWNK4	WNK lysine deficient protein kinase 4	protein-coding
71718	chr15	20349321	20350430	+	0	NA	Intergenic	Intergenic	67131	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
63445	chr13	114114771	114115150	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	17663	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
80231	chr16	2191001	2191350	+	0	NA	intron (NM_020764, intron 1 of 19)	intron (NM_020764, intron 1 of 19)	5430	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
162375	chr3	48013521	48014350	+	0	NA	intron (NM_001385690, intron 1 of 5)	intron (NM_001385690, intron 1 of 5)	2481	NM_001385692	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
37321	chr11	14789801	14790200	+	0	NA	intron (NM_001363569, intron 4 of 15)	intron (NM_001363569, intron 4 of 15)	101671	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
214920	chr7	151514851	151515450	+	0	NA	intron (NM_005614, intron 1 of 7)	L1MB8|LINE|L1	4745	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
160073	chr3	18727651	18727750	+	0	NA	Intergenic	Intergenic	-282108	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
65924	chr14	55332071	55333100	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	60431	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
220179	chr8	95181401	95181800	+	0	NA	Intergenic	Intergenic	34774	NR_046232	619344		NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
115067	chr19	14198121	14198800	+	0	NA	intron (NM_001008701, intron 1 of 23)	intron (NM_001008701, intron 1 of 23)	7709	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
121027	chr19	45801551	45801850	+	0	NA	intron (NM_030785, intron 4 of 5)	AluSz|SINE|Alu	-8855	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
12753	chr1	109624551	109625280	+	0	NA	intron (NM_001257361, intron 1 of 17)	(GT)n|Simple_repeat|Simple_repeat	927	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
68657	chr14	90006101	90006300	+	0	NA	intron (NM_001008744, intron 13 of 15)	intron (NM_001008744, intron 13 of 15)	50273	NM_001008744	55775		NM_018319	ENSG00000042088	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
101772	chr17	73143051	73143350	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-21810	NM_001050	6752		NM_001050	ENSG00000180616	SSTR2	SST2	somatostatin receptor 2	protein-coding
34651	chr10	133329471	133330630	+	0	NA	intron (NM_015722, intron 1 of 5)	CpG	6846	NM_015722	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
30385	chr10	78043871	78044430	+	0	NA	intron (NM_001142285, intron 4 of 4)	Tigger7|DNA|TcMar-Tigger	10287	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
51881	chr12	53500301	53502030	+	0	NA	promoter-TSS (NM_134324)	promoter-TSS (NM_134324)	-118	NM_134323	6895		NM_004178	ENSG00000139546	TARBP2	LOQS|TRBP|TRBP1|TRBP2	TARBP2 subunit of RISC loading complex	protein-coding
55889	chr12	109718921	109719380	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	5325	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
231568	chr9	131497201	131497400	+	0	NA	3' UTR (NM_001384822, exon 31 of 31)	3' UTR (NM_001384822, exon 31 of 31)	-5618	NM_001374695	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
52316	chr12	54955351	54955650	+	0	NA	intron (NM_014796, intron 8 of 8)	MER67C|LTR|ERV1	18232	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
62259	chr13	98565171	98565330	+	0	NA	intron (NM_001286649, intron 1 of 9)	MER5A|DNA|hAT-Charlie	11857	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
135681	chr2	168632871	168633030	+	0	NA	intron (NM_203463, intron 4 of 9)	intron (NM_203463, intron 4 of 9)	50007	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
179916	chr5	696301	696780	+	0	NA	Intergenic	Intergenic	-3188	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
8311	chr1	40067501	40067730	+	0	NA	exon (NM_006367, exon 8 of 13)	exon (NM_006367, exon 8 of 13)	26589	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
36934	chr11	10863101	10863300	+	0	NA	intron (NR_034137, intron 1 of 2)	AluSx|SINE|Alu	4983	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
23512	chr1	228804771	228805150	+	0	NA	Intergenic	Intergenic	69481	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
81250	chr16	4610021	4610630	+	0	NA	intron (NM_145253, intron 2 of 2)	intron (NM_145253, intron 2 of 2)	4563	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
117138	chr19	19298651	19299030	+	0	NA	intron (NM_172231, intron 7 of 13)	intron (NM_172231, intron 7 of 13)	21669	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
65677	chr14	52692121	52693080	+	0	NA	intron (NM_001382467, intron 1 of 14)	intron (NM_001382467, intron 1 of 14)	2958	NM_001382476	30001		NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
196162	chr6	42559451	42559750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4422	NM_015255	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
160379	chr3	27925071	27925430	+	0	NA	Intergenic	Intergenic	-91114	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
128324	chr2	54668271	54668430	+	0	NA	intron (NM_003128, intron 35 of 35)	intron (NM_003128, intron 35 of 35)	-56662	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133524	chr2	120221671	120221900	+	0	NA	3' UTR (NM_024121, exon 1 of 1)	3' UTR (NM_024121, exon 1 of 1)	1615	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
170777	chr3	188749021	188749300	+	0	NA	intron (NM_001167671, intron 8 of 11)	intron (NM_001167671, intron 8 of 11)	60379	NR_029502	407020		NR_029502	ENSG00000207651	MIR28	MIRN28|hsa-mir-28|miR-28	microRNA 28	ncRNA
222175	chr8	132978471	132979850	+	0	NA	intron (NM_003235, intron 34 of 47)	intron (NM_003235, intron 34 of 47)	67421	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
82527	chr16	18341401	18341600	+	0	NA	intron (NR_146336, intron 20 of 34).2	GA-rich|Low_complexity|Low_complexity	-1233	NR_103772	100288162		NR_103772		LOC100288162	-	uncharacterized LOC100288162	ncRNA
121249	chr19	46673271	46673500	+	0	NA	TTS (NM_016457)	TTS (NM_016457)	11907	NR_040041	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
157664	chr22	46262601	46263580	+	0	NA	exon (NM_006071, exon 1 of 1)	exon (NM_006071, exon 1 of 1)	253	NM_006071	10343		NM_006071	ENSG00000130943	PKDREJ	-	polycystin family receptor for egg jelly	protein-coding
106337	chr18	12998571	12998930	+	0	NA	intron (NM_032142, intron 1 of 44)	intron (NM_032142, intron 1 of 44)	7388	NM_032142	55125		NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
73080	chr15	40928621	40929940	+	0	NA	promoter-TSS (NM_019074)	promoter-TSS (NM_019074)	-60	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
236339	chrX	69627651	69627950	+	0	NA	intron (NM_001399, intron 1 of 7)	intron (NM_001399, intron 1 of 7)	11687	NM_001005613	1896		NM_001399	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED	ectodysplasin A	protein-coding
42403	chr11	69043801	69044400	+	0	NA	Intergenic	AluSz|SINE|Alu	-4832	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
75686	chr15	67831151	67831450	+	0	NA	intron (NM_001365915, intron 5 of 8)	intron (NM_001365915, intron 5 of 8)	5791	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
239260	chrY	13434371	13434530	+	0	NA	intron (NM_001258265, intron 2 of 23)	AluSz|SINE|Alu	-44727	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
231596	chr9	131548071	131548230	+	0	NA	intron (NM_001365666, intron 1 of 3)	HERVH-int|LTR|ERV1	2627	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
190456	chr5	180020221	180020480	+	0	NA	intron (NM_001280801, intron 2 of 7)	intron (NM_001280801, intron 2 of 7)	-4953	NR_029885	442908		NR_029885	ENSG00000198995	MIR340	MIRN340|hsa-mir-340|mir-340	microRNA 340	ncRNA
189108	chr5	170333081	170333950	+	0	NA	non-coding (NR_026945, exon 3 of 3)	non-coding (NR_026945, exon 3 of 3)	2122	NR_108024	257358		NM_001025454	ENSG00000235172	LINC01366	-	long intergenic non-protein coding RNA 1366	ncRNA
226628	chr9	73180421	73180680	+	0	NA	Intergenic	Intergenic	28685	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
25824	chr10	11207271	11207450	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	42330	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
164877	chr3	71080721	71081280	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-16076	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
23388	chr1	228185351	228186080	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	11145	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
41435	chr11	66073351	66074400	+	0	NA	intron (NM_018026, intron 1 of 23)	AluJr|SINE|Alu	3603	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
233988	chrX	2812421	2812930	+	0	NA	intron (NM_001141920, intron 9 of 9)	intron (NM_001141920, intron 9 of 9)	-16147	NM_001184702	8908		NM_003918	ENSG00000056998	GYG2	GN-2|GN2	glycogenin 2	protein-coding
230693	chr9	128731951	128732050	+	0	NA	intron (NM_001375958, intron 15 of 15)	intron (NM_001375958, intron 15 of 15)	7538	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
116581	chr19	18248301	18249080	+	0	NA	promoter-TSS (NM_000923)	promoter-TSS (NM_000923)	-490	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
206080	chr7	27183071	27183500	+	0	NA	intron (NM_005523, intron 1 of 1)	intron (NM_005523, intron 1 of 1)	1947	NM_005523	3207		NM_005523	ENSG00000005073	HOXA11	HOX1|HOX1I|RUSAT1	homeobox A11	protein-coding
147493	chr20	59161501	59162200	+	0	NA	intron (NM_001384354, intron 3 of 7)	L1PA17|LINE|L1	-1971	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
67048	chr14	67674051	67675350	+	0	NA	promoter-TSS (NM_006370)	promoter-TSS (NM_006370)	-68	NM_006370	10490		NM_006370	ENSG00000100568	VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
129980	chr2	74000771	74000930	+	0	NA	intron (NM_001287491, intron 2 of 11)	MIRb|SINE|MIR	-1842	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
157763	chr22	46730971	46732000	+	0	NA	intron (NM_022766, intron 1 of 12)	L1MDa|LINE|L1	6767	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
93516	chr17	19017171	19017650	+	0	NA	intron (NM_001282417, intron 11 of 14)	intron (NM_001282417, intron 11 of 14)	-12646	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
53969	chr12	74490351	74490800	+	0	NA	Intergenic	Intergenic	-47260	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
97714	chr17	44348121	44349100	+	0	NA	intron (NM_002087, intron 1 of 12)	intron (NM_002087, intron 1 of 12)	3308	NM_002087	2896		NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin precursor	protein-coding
41957	chr11	67320621	67320880	+	0	NA	intron (NR_024469, intron 1 of 3)	intron (NR_024469, intron 1 of 3)	2911	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
29195	chr10	68977601	68977800	+	0	NA	intron (NM_004728, intron 12 of 14)	intron (NM_004728, intron 12 of 14)	-11103	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
22347	chr1	214602911	214604350	+	0	NA	intron (NM_016343, intron 1 of 19)	intron (NM_016343, intron 1 of 19)	435	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
168092	chr3	138324501	138324730	+	0	NA	intron (NM_001349023, intron 1 of 8)	MLT1O|LTR|ERVL-MaLR	5236	NM_001349025	347736		NM_178130	ENSG00000181322	NME9	NM23-H9|NXL2|TXL-2|TXL2|TXNDC6	NME/NM23 family member 9	protein-coding
219607	chr8	80064151	80064450	+	0	NA	intron (NR_105034, intron 1 of 4)	intron (NR_105034, intron 1 of 4)	16530	NM_001025252	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
156487	chr22	41277521	41277930	+	0	NA	intron (NM_001278651, intron 3 of 16)	intron (NM_001278651, intron 3 of 16)	8462	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
97675	chr17	44247771	44248130	+	0	NA	TTS (NM_000342)	TTS (NM_000342)	20185	NM_000342	6521		NM_000342	ENSG00000004939	SLC4A1	AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR	solute carrier family 4 member 1 (Diego blood group)	protein-coding
105185	chr17	82291651	82291750	+	0	NA	intron (NR_135639, intron 1 of 1)	intron (NR_135639, intron 1 of 1)	1114	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
123268	chr19	53431421	53432730	+	0	NA	promoter-TSS (NR_110551)	promoter-TSS (NR_110551)	91	NM_001008401	388561		NM_001008401	ENSG00000160336	ZNF761	ZNF468	zinc finger protein 761	protein-coding
230794	chr9	129004921	129005580	+	0	NA	intron (NM_015354, intron 39 of 43)	intron (NM_015354, intron 39 of 43)	23081	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
217409	chr8	28367401	28368200	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	18660	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
94453	chr17	29251951	29252980	+	0	NA	intron (NM_005208, intron 4 of 5)	intron (NM_005208, intron 4 of 5)	5606	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
206201	chr7	28207471	28208030	+	0	NA	intron (NR_034097, intron 2 of 3)	L1MEg|LINE|L1	-26955	NM_175061	221895		NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
185090	chr5	119072751	119072850	+	0	NA	intron (NM_001290321, intron 1 of 43)	intron (NM_001290321, intron 1 of 43)	1713	NM_001290322	1657		NM_005509	ENSG00000172869	DMXL1	-	Dmx like 1	protein-coding
103825	chr17	79161351	79161650	+	0	NA	intron (NM_001350453, intron 3 of 13)	intron (NM_001350453, intron 3 of 13)	86676	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
66492	chr14	61669121	61669580	+	0	NA	Intergenic	L2|LINE|L2	-26163	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
168149	chr3	139111871	139112480	+	0	NA	intron (NR_026783, intron 2 of 2)	intron (NR_026783, intron 2 of 2)	7990	NR_026783	60467		NM_021812	ENSG00000232416	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis candidate 1	ncRNA
186945	chr5	139649701	139650030	+	0	NA	promoter-TSS (NR_149086)	promoter-TSS (NR_149086)	-137	NR_149086	111082989		NR_149086	ENSG00000250635	CXXC5-AS1	-	CXXC5 antisense RNA 1	ncRNA
184804	chr5	111235601	111236650	+	0	NA	intron (NM_001744, intron 1 of 10)	MIR|SINE|MIR	11741	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
29160	chr10	68723101	68723450	+	0	NA	intron (NM_018237, intron 2 of 24)	AluY|SINE|Alu	2036	NR_104262	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
16266	chr1	153990021	153991570	+	0	NA	promoter-TSS (NM_001349946)	promoter-TSS (NM_001349946)	33	NM_001030	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
228043	chr9	96015171	96015330	+	0	NA	non-coding (NR_164677, exon 20 of 20)	non-coding (NR_164677, exon 20 of 20)	6561	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
141305	chr2	240440701	240440900	+	0	NA	intron (NM_002081, intron 1 of 8)	intron (NM_002081, intron 1 of 8)	5137	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
219957	chr8	89728001	89728200	+	0	NA	intron (NR_125822, intron 1 of 4)	AluJb|SINE|Alu	29611	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
17463	chr1	156707601	156708080	+	0	NA	Intergenic	Intergenic	-2024	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
29408	chr10	70167001	70167750	+	0	NA	intron (NM_001142648, intron 1 of 7)	intron (NM_001142648, intron 1 of 7)	3139	NM_001142648	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
65368	chr14	50531901	50533230	+	0	NA	promoter-TSS (NM_006575)	promoter-TSS (NM_006575)	4	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
37091	chr11	13210251	13210600	+	0	NA	Intergenic	Intergenic	-66227	NM_001351804	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
19539	chr1	178726151	178726930	+	0	NA	intron (NM_001286247, intron 1 of 18)	intron (NM_001286247, intron 1 of 18)	1296	NM_152663	55103		NM_018037	ENSG00000116191	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
209114	chr7	74962121	74962700	+	0	NA	Intergenic	AluSz|SINE|Alu	-2295	NM_001145064	729438		NM_001145064	ENSG00000274070	CASTOR2	GATSL1|GATSL2	cytosolic arginine sensor for mTORC1 subunit 2	protein-coding
118419	chr19	35777371	35777700	+	0	NA	intron (NM_001172630, intron 1 of 20)	intron (NM_001172630, intron 1 of 20)	1971	NM_001366178	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
158499	chr3	2922051	2922150	+	0	NA	intron (NM_175607, intron 12 of 24)	intron (NM_175607, intron 12 of 24)	29885	NM_001206956	152330		NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
28812	chr10	62240021	62240750	+	0	NA	intron (NM_001282941, intron 4 of 4)	intron (NM_001282941, intron 4 of 4)	28459	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
148769	chr21	8199071	8199830	+	0	NA	intron (NR_038958, intron 1 of 6)	AluSz|SINE|Alu	1830	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
169551	chr3	170183171	170183830	+	0	NA	Intergenic	AluSx|SINE|Alu	-1767	NM_024947	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
51206	chr12	50525421	50526080	+	0	NA	intron (NM_173602, intron 1 of 37)	AluJo|SINE|Alu	20765	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
175659	chr4	76917101	76917300	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-19056	NM_001029870	345079		NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
196078	chr6	42281371	42282100	+	0	NA	intron (NM_033502, intron 4 of 17)	intron (NM_033502, intron 4 of 17)	-63874	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
152563	chr22	21045551	21046450	+	0	NA	promoter-TSS (NM_001291006)	promoter-TSS (NM_001291006)	54	NR_027006	400891		NM_001013675	ENSG00000187905	LRRC74B	-	leucine rich repeat containing 74B	protein-coding
22149	chr1	212062621	212063150	+	0	NA	exon (NM_016448, exon 6 of 15)	exon (NM_016448, exon 6 of 15)	-10834	NR_026911	100131205		NR_026911	ENSG00000220749	RPL21P28	RPL21_8_160	ribosomal protein L21 pseudogene 28	pseudo
76627	chr15	75574901	75575300	+	0	NA	intron (NM_002833, intron 1 of 12)	AluYh3a3|SINE|Alu	4215	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
86015	chr16	57480351	57481100	+	0	NA	promoter-TSS (NM_001369621)	promoter-TSS (NM_001369621)	-348	NM_001369619	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
111489	chr19	3964301	3965480	+	0	NA	exon (NM_001375658, exon 3 of 9)	exon (NM_001375658, exon 3 of 9)	-3378	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
120640	chr19	45069951	45070500	+	0	NA	intron (NM_001278439, intron 18 of 19)	AluSx|SINE|Alu	-5402	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
61867	chr13	77023121	77024180	+	0	NA	intron (NM_012158, intron 1 of 4)	intron (NM_012158, intron 1 of 4)	3509	NM_012158	26224		NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A|IDDSFAS	F-box and leucine rich repeat protein 3	protein-coding
139183	chr2	219218401	219219480	+	0	NA	promoter-TSS (NM_005689)	promoter-TSS (NM_005689)	18	NM_005689	10058		NM_005689	ENSG00000115657	ABCB6	ABC|LAN|MTABC3|PRP|umat	ATP binding cassette subfamily B member 6 (LAN blood group)	protein-coding
220146	chr8	94942671	94942830	+	0	NA	intron (NM_033285, intron 1 of 3)	intron (NM_033285, intron 1 of 3)	6628	NM_001135733	94241		NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
154267	chr22	31627271	31628050	+	0	NA	intron (NM_001326417, intron 3 of 9)	intron (NM_001326417, intron 3 of 9)	3164	NM_014338	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
19768	chr1	182086021	182086280	+	0	NA	Intergenic	Intergenic	-24438	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
27703	chr10	33150501	33151500	+	0	NA	Intergenic	Intergenic	-34193	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
175909	chr4	80182251	80182840	+	0	NA	Intergenic	UCON66|Unknown|Unknown	-2725	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
184037	chr5	91370801	91372200	+	0	NA	intron (NR_138071, intron 7 of 7)	intron (NR_138071, intron 7 of 7)	8597	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
98816	chr17	48352751	48352850	+	0	NA	intron (NM_001075099, intron 3 of 12)	MIR|SINE|MIR	58453	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
41612	chr11	66413071	66413630	+	0	NA	Intergenic	L2b|LINE|L2	-7654	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
106831	chr18	24012701	24013200	+	0	NA	non-coding (NR_110796, exon 2 of 6)	non-coding (NR_110796, exon 2 of 6)	-1804	NM_001243425	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
228376	chr9	99109251	99109980	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	4502	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233576	chrX	302871	303030	+	0	NA	non-coding (NR_028057, exon 9 of 9)	non-coding (NR_028057, exon 9 of 9)	15869	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
199425	chr6	116764951	116765500	+	0	NA	exon (NM_001085480, exon 2 of 4)	exon (NM_001085480, exon 2 of 4)	494	NM_001085480	221303		NM_001085480	ENSG00000183807	FAM162B	C6orf189|bA86F4.2	family with sequence similarity 162 member B	protein-coding
204818	chr7	5687051	5687350	+	0	NA	intron (NM_207111, intron 13 of 16)	AluSq|SINE|Alu	-6739	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
20491	chr1	198644801	198645080	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	5900	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
20805	chr1	201185051	201185150	+	0	NA	Intergenic	Intergenic	-5724	NM_001164586	91156		NM_178275	ENSG00000163395	IGFN1	EEF1A2BP1	immunoglobulin like and fibronectin type III domain containing 1	protein-coding
214452	chr7	150276071	150276450	+	0	NA	intron (NR_147012, intron 6 of 10)	intron (NR_147012, intron 6 of 10)	26720	NM_001164459	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
143856	chr20	32534101	32535700	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	24941	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
106516	chr18	21074571	21075400	+	0	NA	intron (NM_005406, intron 1 of 32)	L2|LINE|L2	36828	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
120996	chr19	45767351	45767450	+	0	NA	promoter-TSS (NR_147193)	promoter-TSS (NR_147193)	-396	NR_147193	109729182		NR_147193	ENSG00000267395	DM1-AS	-	DM1 locus antisense RNA	ncRNA
81770	chr16	11504771	11504930	+	0	NA	intron (NM_001370704, intron 8 of 66)	AluSz|SINE|Alu	22397	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
141667	chr2	241777951	241778250	+	0	NA	intron (NM_022134, intron 1 of 3)	intron (NM_022134, intron 1 of 3)	1278	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
95541	chr17	36609371	36609530	+	0	NA	TTS (NM_024864)	TTS (NM_024864)	7867	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
164371	chr3	58180001	58180200	+	0	NA	Intergenic	Intergenic	-9465	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
91549	chr17	5035301	5035980	+	0	NA	promoter-TSS (NM_017986)	promoter-TSS (NM_017986)	-208	NM_001104577	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
138090	chr2	202235771	202235930	+	0	NA	intron (NR_163943, intron 1 of 5)	AluSg|SINE|Alu	2747	NM_003352	7341		NM_003352	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin like modifier 1	protein-coding
130318	chr2	84970401	84971600	+	0	NA	promoter-TSS (NM_020122)	promoter-TSS (NM_020122)	-161	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
6665	chr1	29125851	29126500	+	0	NA	Intergenic	Intergenic	-2272	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
88973	chr16	87865101	87865300	+	0	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	4307	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
72242	chr15	30469971	30470130	+	0	NA	Intergenic	Intergenic	-1119	NR_146103	100288203		NR_146103		WHAMMP4	-	WHAMM pseudogene 4	pseudo
178270	chr4	143883801	143884000	+	0	NA	intron (NM_002102, intron 1 of 3)	intron (NM_002102, intron 1 of 3)	21659	NM_002102	2996		NM_002102	ENSG00000197465	GYPE	GPE|GYPA|MNS|MiIX	glycophorin E (MNS blood group)	protein-coding
219365	chr8	70367971	70368300	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	35255	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
184210	chr5	95955771	95955930	+	0	NA	intron (NM_012081, intron 1 of 11)	intron (NM_012081, intron 1 of 11)	6001	NM_012081	22936		NM_012081	ENSG00000118985	ELL2	MRCCAT1	elongation factor for RNA polymerase II 2	protein-coding
33808	chr10	123158301	123158700	+	0	NA	intron (NM_004725, intron 4 of 7)	intron (NM_004725, intron 4 of 7)	4098	NM_004725	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
168176	chr3	140759201	140759400	+	0	NA	Intergenic	Intergenic	81236	NM_152616	287015		NM_152616	ENSG00000155890	TRIM42	PPP1R40|T4A1	tripartite motif containing 42	protein-coding
164658	chr3	66816121	66816630	+	0	NA	Intergenic	Intergenic	-78039	NR_135533	105377143		NR_135533		LOC105377143	-	uncharacterized LOC105377143	ncRNA
17070	chr1	156112201	156112930	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	-2146	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
120968	chr19	45711821	45712080	+	0	NA	exon (NM_001080469, exon 2 of 2)	exon (NM_001080469, exon 2 of 2)	3328	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
140130	chr2	231544251	231544350	+	0	NA	Intergenic	AluSz6|SINE|Alu	-13855	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
137897	chr2	200858351	200858450	+	0	NA	intron (NR_027856, intron 3 of 10)	intron (NR_027856, intron 3 of 10)	6161	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
12086	chr1	99783551	99783650	+	0	NA	Intergenic	L3|LINE|CR1	-16965	NM_001361041	391059		NM_001013660	ENSG00000156869	FRRS1	SDFR2|SDR2	ferric chelate reductase 1	protein-coding
207899	chr7	50417851	50418380	+	0	NA	Intergenic	Intergenic	32235	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
116306	chr19	17782871	17783230	+	0	NA	non-coding (NR_169219, exon 24 of 29)	non-coding (NR_169219, exon 24 of 29)	-12088	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
85953	chr16	57260051	57261100	+	0	NA	intron (NM_015993, intron 2 of 3)	intron (NM_015993, intron 2 of 3)	15316	NM_012106	23568		NM_012106	ENSG00000102931	ARL2BP	BART|BART1|RP66	ADP ribosylation factor like GTPase 2 binding protein	protein-coding
103792	chr17	79027771	79028130	+	0	NA	promoter-TSS (NR_040019)	promoter-TSS (NR_040019)	-295	NR_040018	100507410		NR_040018		C1QTNF1-AS1	-	C1QTNF1 antisense RNA 1	ncRNA
40115	chr11	62819071	62819900	+	0	NA	intron (NM_001244666, intron 10 of 10)	L1MEf|LINE|L1	12566	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
178543	chr4	151097521	151097950	+	0	NA	Intergenic	AluJo|SINE|Alu	-1838	NM_001267699	6189		NM_001006	ENSG00000145425	RPS3A	FTE1|MFTL|S3A|eS1	ribosomal protein S3A	protein-coding
15515	chr1	150487091	150488380	+	0	NA	intron (NM_001271896, intron 1 of 13)	intron (NM_001271896, intron 1 of 13)	316	NR_073514	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
147215	chr20	57386551	57386850	+	0	NA	intron (NR_149006, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	-4696	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
62779	chr13	108451621	108451700	+	0	NA	Intergenic	Intergenic	-144245	NM_015011	23026		NM_015011	ENSG00000041515	MYO16	MYAP3|MYR8|Myo16b|NYAP3|PPP1R107	myosin XVI	protein-coding
44799	chr11	113593771	113593930	+	0	NA	Intergenic	Intergenic	112458	NR_110047	80975		NM_030770	ENSG00000166682	TMPRSS5	SPINESIN	transmembrane serine protease 5	protein-coding
164908	chr3	71131971	71132330	+	0	NA	promoter-TSS (NM_001349342)	promoter-TSS (NM_001349342)	47	NM_001349342	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
33101	chr10	110927621	110928080	+	0	NA	intron (NR_136749, intron 1 of 7)	intron (NR_136749, intron 1 of 7)	8246	NM_007373	8036		NM_007373	ENSG00000108061	SHOC2	NSLH1|SIAA0862|SOC2|SUR8	SHOC2 leucine rich repeat scaffold protein	protein-coding
16480	chr1	154715851	154716400	+	0	NA	intron (NM_170782, intron 5 of 7)	UCON78|DNA|DNA	-88128	NM_001365045	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
182664	chr5	67217271	67217430	+	0	NA	Intergenic	Intergenic	-20551	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
150131	chr21	37582571	37582750	+	0	NA	Intergenic	Intergenic	162361	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
183302	chr5	76595521	76595780	+	0	NA	intron (NM_006633, intron 9 of 35)	AluJr|SINE|Alu	13319	NR_134278	101929109		NR_134278	ENSG00000249713	LOC101929109	-	uncharacterized LOC101929109	ncRNA
2778	chr1	10796671	10796830	+	0	NA	promoter-TSS (NM_001079843)	promoter-TSS (NM_001079843)	-104	NM_017766	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
50153	chr12	45876651	45877650	+	0	NA	intron (NM_152641, intron 16 of 20)	Tigger1|DNA|TcMar-Tigger	113424	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
60905	chr13	46167101	46167580	+	0	NA	intron (NM_002298, intron 1 of 15)	intron (NM_002298, intron 1 of 15)	14837	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
224171	chr9	5263671	5264250	+	0	NA	Intergenic	MER57A1|LTR|ERV1	32541	NM_002195	3641		NM_002195	ENSG00000120211	INSL4	EPIL|PLACENTIN	insulin like 4	protein-coding
5107	chr1	24861971	24862330	+	0	NA	Intergenic	Intergenic	57266	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
12273	chr1	100490701	100491100	+	0	NA	intron (NM_001319210, intron 11 of 16)	L1ME4a|LINE|L1	-47239	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
48102	chr12	7639601	7641550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	25333	NM_001644	339		NM_001644	ENSG00000111701	APOBEC1	APO1|APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme catalytic subunit 1	protein-coding
21967	chr1	208543071	208543280	+	0	NA	Intergenic	(AGGTGG)n|Simple_repeat|Simple_repeat	-185513	NR_146914	105372893		NR_146914	ENSG00000232812	LINC01717	-	long intergenic non-protein coding RNA 1717	ncRNA
223407	chr8	143928071	143929200	+	0	NA	intron (NM_201383, intron 25 of 31)	intron (NM_201383, intron 25 of 31)	10962	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
196934	chr6	52419071	52419230	+	0	NA	Intergenic	Intergenic	-1192	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
125935	chr2	25168221	25169330	+	0	NA	promoter-TSS (NM_001319205)	promoter-TSS (NM_001319205)	76	NM_001035256	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
181611	chr5	43627071	43627330	+	0	NA	intron (NM_182977, intron 6 of 21)	MLT1L|LTR|ERVL-MaLR	-23970	NR_073113	100652772		NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
109130	chr18	80167771	80168400	+	0	NA	intron (NR_028339, intron 2 of 2)	intron (NR_028339, intron 2 of 2)	20161	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
205442	chr7	17022851	17023350	+	0	NA	Intergenic	Intergenic	-141117	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
209636	chr7	77742121	77742380	+	0	NA	intron (NM_198467, intron 2 of 7)	intron (NM_198467, intron 2 of 7)	-44905	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
180833	chr5	32535621	32535880	+	0	NA	Intergenic	Intergenic	-49807	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
39945	chr11	62550501	62550830	+	0	NA	Intergenic	AluJb|SINE|Alu	-3859	NM_001620	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
179662	chr4	189912251	189912450	+	0	NA	intron (NR_149038, intron 2 of 2)	intron (NR_149038, intron 2 of 2)	28383	NR_149039	728339		NR_149038	ENSG00000245685	FRG1-DT	-	FRG1 divergent transcript	ncRNA
121276	chr19	46711501	46711700	+	0	NA	intron (NM_001079881, intron 3 of 18)	AluSx|SINE|Alu	-2246	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
148835	chr21	8395501	8396400	+	0	NA	promoter-TSS (NR_146154)	promoter-TSS (NR_146154)	343	NR_146120	109864274		NR_146120		RNA5-8SN4	RN5-8S1|RNA5-8S5	RNA, 5.8S ribosomal N4	rRNA
137436	chr2	196905651	196905950	+	0	NA	intron (NM_024989, intron 4 of 26)	L1HS|LINE|L1	20907	NM_001321099	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
68912	chr14	91360121	91360380	+	0	NA	intron (NM_001080414, intron 3 of 29)	AluJr|SINE|Alu	57570	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
215786	chr8	2159971	2160130	+	0	NA	Intergenic	Intergenic	83461	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
64005	chr14	22493901	22494100	+	0	NA	Intergenic	Intergenic	-11041	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
182763	chr5	68299321	68299780	+	0	NA	3' UTR (NM_181504, exon 10 of 10)	3' UTR (NM_181504, exon 10 of 10)	6973	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
200522	chr6	136225571	136225730	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	24661	NM_001318738	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
213075	chr7	131085201	131086800	+	0	NA	intron (NR_109852, intron 2 of 5)	L1MC4|LINE|L1	21030	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
230288	chr9	127940921	127941550	+	0	NA	3' UTR (NM_001035254, exon 11 of 11)	3' UTR (NM_001035254, exon 11 of 11)	-3381	NM_001378436	8818		NM_003863	ENSG00000136908	DPM2	CDG1U	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein-coding
160346	chr3	27723171	27723330	+	0	NA	promoter-TSS (NM_005442)	promoter-TSS (NM_005442)	-535	NM_001278183	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
76974	chr15	78223301	78223500	+	0	NA	intron (NM_001199377, intron 1 of 13)	L1PA10|LINE|L1	11165	NM_015162	23205		NM_015162	ENSG00000103740	ACSBG1	BG|BG1|BGM|GR-LACS|LPD	acyl-CoA synthetase bubblegum family member 1	protein-coding
49150	chr12	14947071	14947230	+	0	NA	intron (NR_135637, intron 2 of 3)	intron (NR_135637, intron 2 of 3)	1746	NR_135637	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
132842	chr2	110804901	110805330	+	0	NA	intron (NM_001371254, intron 8 of 18)	intron (NM_001371254, intron 8 of 18)	72542	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
188681	chr5	157276051	157276150	+	0	NA	intron (NM_014376, intron 1 of 30)	L1MB8|LINE|L1	6776	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
235904	chrX	53054071	53054500	+	0	NA	intron (NM_018969, intron 1 of 1)	AluSx|SINE|Alu	5496	NM_018969	54328		NM_018969	ENSG00000184194	GPR173	SREB3	G protein-coupled receptor 173	protein-coding
10188	chr1	61736251	61736900	+	0	NA	Intergenic	LTR64|LTR|ERV1	-5905	NM_001350145	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
162430	chr3	48427371	48427680	+	0	NA	intron (NM_001130082, intron 1 of 37)	intron (NM_001130082, intron 1 of 37)	1938	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
101988	chr17	74760351	74760450	+	0	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	11772	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
45312	chr11	118156401	118157450	+	0	NA	Intergenic	Intergenic	-4102	NM_174934	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
214627	chr7	150734721	150735430	+	0	NA	intron (NM_001199577, intron 3 of 5)	intron (NM_001199577, intron 3 of 5)	-2273	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
17825	chr1	159891371	159891900	+	0	NA	intron (NM_012337, intron 2 of 11)	intron (NM_012337, intron 2 of 11)	8444	NR_130464	100422852		NR_130464	ENSG00000266458	MIR4259	-	microRNA 4259	ncRNA
174460	chr4	39728721	39729180	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluY|SINE|Alu	30814	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
91287	chr17	4145301	4145500	+	0	NA	intron (NM_144611, intron 1 of 3)	MIR3|SINE|MIR	1703	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
160891	chr3	33776501	33776730	+	0	NA	Intergenic	Intergenic	-21956	NM_001256192	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
79071	chr16	163821	165170	+	0	NA	Intergenic	CpG	-1483	NM_001003938	3042		NM_001003938	ENSG00000206177	HBM	HBAP2|HBK	hemoglobin subunit mu	protein-coding
65878	chr14	55102901	55103680	+	0	NA	Intergenic	Intergenic	-25962	NM_001357678	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
66965	chr14	65940151	65940430	+	0	NA	Intergenic	Intergenic	469188	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
28958	chr10	63236371	63237280	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	32398	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
103596	chr17	78715471	78716100	+	0	NA	intron (NM_017456, intron 1 of 12)	HAL1ME|LINE|L1	1247	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
199316	chr6	112286021	112286700	+	0	NA	intron (NR_121193, intron 2 of 2)	intron (NR_121193, intron 2 of 2)	-31645	NM_001105209	3910		NM_002290	ENSG00000112769	LAMA4	CMD1JJ|LAMA3|LAMA4*-1	laminin subunit alpha 4	protein-coding
118571	chr19	36219051	36219350	+	0	NA	intron (NM_007145, intron 2 of 3)	AluJr|SINE|Alu	4094	NM_007145	7705		NM_007145	ENSG00000167635	ZNF146	OZF	zinc finger protein 146	protein-coding
123247	chr19	53192571	53193730	+	0	NA	intron (NM_024733, intron 1 of 3)	CpG	208	NM_024733	79788		NM_024733	ENSG00000197497	ZNF665	ZFP160L	zinc finger protein 665	protein-coding
208070	chr7	56085151	56085450	+	0	NA	intron (NM_001258459, intron 4 of 10)	AluJr|SINE|Alu	7652	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
235654	chrX	48529751	48529850	+	0	NA	Intergenic	FLAM_A|SINE|Alu	7992	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
193140	chr6	29624551	29625050	+	0	NA	intron (NM_021903, intron 1 of 17).7	intron (NM_021903, intron 1 of 17).7	3428	NM_021903	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
104058	chr17	80150551	80151250	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-3772	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
108918	chr18	79444071	79444300	+	0	NA	intron (NM_172389, intron 3 of 9)	intron (NM_172389, intron 3 of 9)	43886	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
189824	chr5	177025801	177026200	+	0	NA	intron (NM_001308213, intron 2 of 8)	AluSz|SINE|Alu	3304	NM_001308214	23567		NM_012279	ENSG00000113761	ZNF346	JAZ|Zfp346	zinc finger protein 346	protein-coding
10881	chr1	78130801	78131080	+	0	NA	intron (NM_017655, intron 5 of 5)	intron (NM_017655, intron 5 of 5)	84974	NM_017655	54810		NM_017655	ENSG00000137960	GIPC2	SEMCAP-2|SEMCAP2	GIPC PDZ domain containing family member 2	protein-coding
174791	chr4	48044371	48044930	+	0	NA	Intergenic	Intergenic	27878	NM_207330	152519		NM_207330	ENSG00000163293	NIPAL1	NIPA3|NPAL1|SLC57A3	NIPA like domain containing 1	protein-coding
105202	chr17	82320301	82320550	+	0	NA	TTS (NM_003004)	TTS (NM_003004)	-2817	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
66990	chr14	67166401	67166630	+	0	NA	intron (NM_020806, intron 20 of 22)	intron (NM_020806, intron 20 of 22)	-22925	NM_173526	161142		NM_173526	ENSG00000172717	GARIN2	C14orf54|FAM71D|GARI-L1|GARI-L2	golgi associated RAB2 interactor family member 2	protein-coding
201524	chr6	149127371	149127730	+	0	NA	Intergenic	AluY|SINE|Alu	-90374	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
65171	chr14	49596521	49596980	+	0	NA	intron (NM_001351375, intron 1 of 2)	intron (NM_001351375, intron 1 of 2)	-1947	NR_037793	122769		NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
61179	chr13	49146621	49147580	+	0	NA	intron (NM_001079673, intron 8 of 25)	intron (NM_001079673, intron 8 of 25)	36783	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
138523	chr2	207368251	207368400	+	0	NA	Intergenic	Intergenic	-98901	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA
123323	chr19	53582501	53582950	+	0	NA	Intergenic	AluSx|SINE|Alu	20772	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
45588	chr11	118887351	118888330	+	0	NA	intron (NM_001716, intron 1 of 1)	intron (NM_001716, intron 1 of 1)	3948	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
223044	chr8	143371251	143371350	+	0	NA	intron (NM_052924, intron 1 of 14)	intron (NM_052924, intron 1 of 14)	2424	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
158477	chr22	50760001	50760430	+	0	NA	intron (NR_026981, intron 1 of 3)	intron (NR_026981, intron 1 of 3)	3129	NR_026981	284942		NM_203302	ENSG00000291064	RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
40476	chr11	64236651	64236950	+	0	NA	intron (NM_003377, intron 4 of 6)	AluSq|SINE|Alu	2216	NM_003377	7423		NM_003377	ENSG00000173511	VEGFB	VEGFL|VRF	vascular endothelial growth factor B	protein-coding
124695	chr2	3556501	3556900	+	0	NA	intron (NR_165465, intron 1 of 6)	MIRc|SINE|MIR	1633	NR_165467	246243		NM_002936	ENSG00000171865	RNASEH1	H1RNA|PEOB2|RNH1	ribonuclease H1	protein-coding
231825	chr9	132579271	132579430	+	0	NA	Intergenic	Intergenic	-3256	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
172822	chr4	3071451	3071950	+	0	NA	intron (NR_045414, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	2814	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
187914	chr5	148846821	148847080	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	20339	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
9758	chr1	53327701	53329400	+	0	NA	promoter-TSS (NM_004631)	promoter-TSS (NM_004631)	317	NR_131923	105378732		NR_131923	ENSG00000225675	LRP8-DT	LINC01771	LRP8 divergent transcript	ncRNA
10723	chr1	75793401	75793800	+	0	NA	intron (NM_004582, intron 7 of 8)	intron (NM_004582, intron 7 of 8)	-3282	NM_002440	4438		NM_002440	ENSG00000057468	MSH4	ASG|POF20|SPGF2	mutS homolog 4	protein-coding
36250	chr11	3761671	3762030	+	0	NA	intron (NR_157590, intron 9 of 31)	AluSz6|SINE|Alu	35696	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
215582	chr7	158842451	158842850	+	0	NA	intron (NM_001350914, intron 1 of 24)	intron (NM_001350914, intron 1 of 24)	3405	NM_001350914	55112		NM_018051	ENSG00000126870	DYNC2I1	CFAP163|DIC6|FAP163|SRPS6|SRTD8|WDR60	dynein 2 intermediate chain 1	protein-coding
81934	chr16	11787301	11787730	+	0	NA	intron (NM_014153, intron 1 of 22)	AluJr|SINE|Alu	9743	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
117276	chr19	19471871	19472380	+	0	NA	intron (NM_001384541, intron 2 of 10)	AluJr|SINE|Alu	37062	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
200726	chr6	137681051	137681300	+	0	NA	Intergenic	Intergenic	15529	NR_125867	102723649		NR_125867	ENSG00000230533	LINC03004	-	long intergenic non-protein coding RNA 3004	ncRNA
184128	chr5	94616101	94616500	+	0	NA	intron (NM_001385719, intron 1 of 6)	intron (NM_001385719, intron 1 of 6)	1825	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
60229	chr13	40551771	40552330	+	0	NA	Intergenic	MER87B|LTR|ERV1	-71044	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
235753	chrX	48954951	48956130	+	0	NA	intron (NM_001136159, intron 1 of 8)	intron (NM_001136159, intron 1 of 8)	2067	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
129687	chr2	70498171	70498350	+	0	NA	intron (NM_001308158, intron 2 of 5)	intron (NM_001308158, intron 2 of 5)	-16620	NR_046798	100874273		NR_046798	ENSG00000224606	TGFA-IT1	-	TGFA intronic transcript 1	ncRNA
165515	chr3	100334461	100335800	+	0	NA	intron (NM_020202, intron 1 of 9)	intron (NM_020202, intron 1 of 9)	373	NM_020202	56954		NM_020202	ENSG00000114021	NIT2	HEL-S-8a	nitrilase family member 2	protein-coding
231547	chr9	131475621	131476530	+	0	NA	exon (NM_001384822, exon 16 of 31)	exon (NM_001384822, exon 16 of 31)	-9590	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
101549	chr17	68001751	68002580	+	0	NA	Intergenic	AluY|SINE|Alu	-5696	NM_001382359	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
219900	chr8	85764851	85764950	+	0	NA	Intergenic	Intergenic	-1001	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
56449	chr12	113962051	113962600	+	0	NA	exon (NM_001146699, exon 2 of 25)	exon (NM_001146699, exon 2 of 25)	4000	NM_001146698	9904		NM_016196	ENSG00000122965	RBM19	Mrd1	RNA binding motif protein 19	protein-coding
80557	chr16	2829971	2830350	+	0	NA	promoter-TSS (NM_145252)	promoter-TSS (NM_145252)	-12	NM_145252	124220		NM_145252	ENSG00000162078	ZG16B	EECP|HRPE773|JCLN2|PAUF|PRO1567	zymogen granule protein 16B	protein-coding
89648	chr16	89344551	89344850	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	24248	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
192401	chr6	24833871	24834330	+	0	NA	intron (NM_014722, intron 16 of 22)	intron (NM_014722, intron 16 of 22)	-35183	NM_001282492	101928603		NM_001282492	ENSG00000260286	ARMH2	C6orf229	armadillo like helical domain containing 2	protein-coding
236682	chrX	77447451	77447950	+	0	NA	exon (NM_003868, exon 1 of 3)	exon (NM_003868, exon 1 of 3)	311	NM_003868	8823		NM_003868	ENSG00000196468	FGF16	FGF-16|MF4	fibroblast growth factor 16	protein-coding
115048	chr19	14135301	14135500	+	0	NA	intron (NM_018154, intron 1 of 3)	intron (NM_018154, intron 1 of 3)	1189	NM_018154	55723		NM_018154	ENSG00000105011	ASF1B	CIA-II	anti-silencing function 1B histone chaperone	protein-coding
25741	chr10	9091621	9091950	+	0	NA	Intergenic	Intergenic	-183828	NR_108039	100507163		NR_108039		LINC00709	-	long intergenic non-protein coding RNA 709	ncRNA
21749	chr1	206882421	206882680	+	0	NA	Intergenic	L1MB7|LINE|L1	-14893	NM_001185158	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
219650	chr8	80377301	80378350	+	0	NA	Intergenic	(AAGAA)n|Simple_repeat|Simple_repeat	-107768	NM_001277145	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
127489	chr2	42252201	42252800	+	0	NA	intron (NM_019063, intron 2 of 22)	L2c|LINE|L2	-82269	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
223922	chr9	507171	507530	+	0	NA	intron (NM_001354332, intron 1 of 11)	AluJo|SINE|Alu	2655	NM_015158	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
84245	chr16	30003171	30003350	+	0	NA	intron (NR_134855, intron 7 of 10)	intron (NR_134855, intron 7 of 10)	7019	NR_130787	283899		NM_173618	ENSG00000169592	INO80E	CCDC95	INO80 complex subunit E	protein-coding
27135	chr10	28291951	28292050	+	0	NA	intron (NM_001318170, intron 1 of 16)	Tigger3b|DNA|TcMar-Tigger	-2650	NR_107053	102465880		NR_107053	ENSG00000275036	MIR8086	hsa-mir-8086	microRNA 8086	ncRNA
119156	chr19	39392751	39393050	+	0	NA	intron (NM_017592, intron 2 of 3)	intron (NM_017592, intron 2 of 3)	1522	NM_001317770	55588		NM_017592	ENSG00000063322	MED29	IXL|MED2	mediator complex subunit 29	protein-coding
177595	chr4	120844671	120844830	+	0	NA	intron (NM_001379104, intron 3 of 15)	Tigger1|DNA|TcMar-Tigger	77976	NM_001379106	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
70193	chr14	100524871	100525030	+	0	NA	intron (NM_024515, intron 4 of 6)	intron (NM_024515, intron 4 of 6)	23177	NM_001385103	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
76730	chr15	76230151	76230300	+	0	NA	intron (NM_001127716, intron 9 of 10)	AluY|SINE|Alu	29927	NR_028510	7302		NR_002721		TYRO3P	-	TYRO3P protein tyrosine kinase pseudogene	pseudo
82170	chr16	14921351	14923000	+	0	NA	non-coding (NR_146231, exon 11 of 39)	non-coding (NR_146231, exon 11 of 39)	-3762	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
233772	chrX	1418401	1418600	+	0	NA	intron (NM_001173473, intron 10 of 12).2	MLT1J|LTR|ERVL-MaLR	17969	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
103568	chr17	78681851	78682150	+	0	NA	intron (NM_017456, intron 10 of 12)	HAL1|LINE|L1	35032	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
155170	chr22	37698251	37698550	+	0	NA	intron (NM_001039141, intron 2 of 23)	AluSz|SINE|Alu	1352	NM_001039141	11078		NM_007032	ENSG00000100106	TRIOBP	DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
87186	chr16	69383521	69383780	+	0	NA	intron (NM_005652, intron 3 of 9)	intron (NM_005652, intron 3 of 9)	2357	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
68151	chr14	75561001	75561600	+	0	NA	Intergenic	Intergenic	-17320	NM_017791	55640		NM_017791	ENSG00000119686	FLVCR2	C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2	FLVCR choline and putative heme transporter 2	protein-coding
26890	chr10	26423101	26423500	+	0	NA	Intergenic	L1MC3|LINE|L1	-15041	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
137879	chr2	200840801	200841230	+	0	NA	Intergenic	AluSc5|SINE|Alu	23546	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
106712	chr18	23459871	23460300	+	0	NA	intron (NR_145477, intron 1 of 12)	intron (NR_145477, intron 1 of 12)	6798	NR_145477	8780		NM_003831	ENSG00000101782	RIOK3	SUDD	RIO kinase 3	protein-coding
207877	chr7	50383371	50383880	+	0	NA	intron (NM_001220768, intron 4 of 4)	intron (NM_001220768, intron 4 of 4)	64577	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
34157	chr10	128067971	128068450	+	0	NA	exon (NM_006504, exon 12 of 21)	exon (NM_006504, exon 12 of 21)	-5785	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
58422	chr12	131922251	131922780	+	0	NA	3' UTR (NM_003565, exon 28 of 28)	3' UTR (NM_003565, exon 28 of 28)	-6761	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
153306	chr22	24185551	24186250	+	0	NA	exon (NM_019601, exon 8 of 15)	exon (NM_019601, exon 8 of 15)	4413	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
88062	chr16	81461701	81461900	+	0	NA	intron (NM_198390, intron 1 of 20)	MIRb|SINE|MIR	16630	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
97503	chr17	43906271	43908630	+	0	NA	promoter-TSS (NM_001278374)	promoter-TSS (NM_001278374)	86	NM_001278374	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
123029	chr19	51131651	51132530	+	0	NA	intron (NM_001198558, intron 6 of 6)	MSTB1|LTR|ERVL-MaLR	7184	NM_014441	27180		NM_014441	ENSG00000129450	SIGLEC9	CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9	sialic acid binding Ig like lectin 9	protein-coding
226501	chr9	71780421	71780680	+	0	NA	Intergenic	AluSz|SINE|Alu	-12037	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
145171	chr20	38858921	38859600	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	53563	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
216554	chr8	21901271	21901730	+	0	NA	Intergenic	Intergenic	12190	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
48094	chr12	7437571	7438030	+	0	NA	intron (NM_174941, intron 2 of 19)	intron (NM_174941, intron 2 of 19)	6353	NM_174941	283316		NM_174941	ENSG00000177675	CD163L1	CD163B|M160|SCARI2|STAR|WC1	CD163 molecule like 1	protein-coding
129719	chr2	70896121	70896580	+	0	NA	Intergenic	Intergenic	-4226	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
26865	chr10	24921001	24921570	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	31321	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
25978	chr10	11782721	11783280	+	0	NA	Intergenic	Intergenic	-40356	NM_153256	254427		NM_153256	ENSG00000148426	PROSER2	C10orf47	proline and serine rich 2	protein-coding
68858	chr14	91301451	91301950	+	0	NA	intron (NM_001080414, intron 20 of 29)	AluSz|SINE|Alu	-47820	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
155624	chr22	38870121	38870740	+	0	NA	intron (NM_014292, intron 4 of 4)	intron (NM_014292, intron 4 of 4)	1786	NM_001303494	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
37629	chr11	20368501	20368700	+	0	NA	TTS (NM_001098523)	TTS (NM_001098523)	4459	NM_001098523	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
117249	chr19	19440121	19440380	+	0	NA	intron (NM_001384516, intron 2 of 12)	L1MC5a|LINE|L1	5187	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
207371	chr7	44109101	44109730	+	0	NA	intron (NM_001129, intron 9 of 20)	intron (NM_001129, intron 9 of 20)	-1434	NR_039792	100616346		NR_039792	ENSG00000284412	MIR4649	mir-4649	microRNA 4649	ncRNA
664	chr1	1365371	1366050	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2169	NM_001282582	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
106441	chr18	13614671	13615600	+	0	NA	intron (NM_001003674, intron 1 of 3)	intron (NM_001003674, intron 1 of 3)	3371	NM_001276249	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
48968	chr12	12964371	12964530	+	0	NA	intron (NR_149067, intron 1 of 2)	L2a|LINE|L2	-14066	NM_018654	55507		NM_018654	ENSG00000111291	GPRC5D	-	G protein-coupled receptor class C group 5 member D	protein-coding
121138	chr19	46225651	46226000	+	0	NA	Intergenic	Intergenic	-3917	NM_198541	374918		NM_198541	ENSG00000188293	IGFL1	APRG644|UNQ644	IGF like family member 1	protein-coding
166186	chr3	111694621	111694880	+	0	NA	intron (NM_153268, intron 1 of 3)	intron (NM_153268, intron 1 of 3)	-17317	NR_046733	100874115		NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA
141960	chr20	1302771	1303900	+	0	NA	intron (NM_014723, intron 5 of 5)	intron (NM_014723, intron 5 of 5)	10338	NM_015685	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
173544	chr4	10082151	10082250	+	0	NA	intron (NM_017491, intron 10 of 14)	intron (NM_017491, intron 10 of 14)	-3508	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
183781	chr5	81853551	81854000	+	0	NA	Intergenic	Intergenic	-102522	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
23716	chr1	231871651	231872080	+	0	NA	intron (NM_001164541, intron 9 of 9)	intron (NM_001164541, intron 9 of 9)	-53348	NR_002227	27184		NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2	ncRNA
172795	chr4	2952571	2953050	+	0	NA	intron (NM_001291978, intron 5 of 17)	AluSx|SINE|Alu	10596	NM_001291978	8602		NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
220197	chr8	95890671	95890930	+	0	NA	Intergenic	Intergenic	57548	NR_036611	100500773		NR_036611		SRSF3P2	-	SRSF3 pseudogene 2	pseudo
27514	chr10	32299351	32299450	+	0	NA	intron (NR_168511, intron 2 of 13)	AluSx1|SINE|Alu	47758	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
33607	chr10	119540901	119541300	+	0	NA	intron (NM_001005339, intron 1 of 4)	MER63D|DNA|hAT-Blackjack	1619	NM_001005339	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
212144	chr7	116583721	116584080	+	0	NA	intron (NR_165033, intron 2 of 4)	intron (NR_165033, intron 2 of 4)	30757	NR_120506	100996266		NR_120506		COMETT	COMET|LINC01510	cytosolic oncogenic antisense to MET transcript	ncRNA
231792	chr9	132350701	132351750	+	0	NA	intron (NM_001351527, intron 2 of 25)	intron (NM_001351527, intron 2 of 25)	3631	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
151961	chr22	19132571	19133430	+	0	NA	TTS (NM_053006)	TTS (NM_053006)	1692	NM_053006	23617		NM_053006	ENSG00000206203	TSSK2	DGS-G|SPOGA2|STK22B|TSK2	testis specific serine kinase 2	protein-coding
34359	chr10	132224801	132225000	+	0	NA	intron (NM_173575, intron 7 of 11)	intron (NM_173575, intron 7 of 11)	24208	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
146244	chr20	48830151	48831050	+	0	NA	Intergenic	Intergenic	-2601	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
118820	chr19	38554971	38555530	+	0	NA	intron (NM_000540, intron 89 of 105)	AluJb|SINE|Alu	-41097	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
68410	chr14	81062951	81063130	+	0	NA	intron (NM_001142626, intron 2 of 8)	MER20|DNA|hAT-Charlie	107419	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
167818	chr3	133589421	133589730	+	0	NA	3' UTR (NM_017548, exon 5 of 5)	3' UTR (NM_017548, exon 5 of 5)	15141	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
16791	chr1	155542421	155542880	+	0	NA	intron (NM_018489, intron 1 of 27)	intron (NM_018489, intron 1 of 27)	-19392	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
79803	chr16	1400321	1400580	+	0	NA	intron (NM_001372107, intron 4 of 14)	intron (NM_001372107, intron 4 of 14)	14254	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
110125	chr19	1589901	1590100	+	0	NA	intron (NM_001281454, intron 1 of 6)	L1MB7|LINE|L1	2865	NM_001281454	53615		NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
126216	chr2	26854171	26854530	+	0	NA	intron (NM_001253724, intron 1 of 12)	AluSz6|SINE|Alu	5926	NM_001253724	56896		NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|CV2|RTSC4|Ulip6	dihydropyrimidinase like 5	protein-coding
10206	chr1	62144221	62144480	+	0	NA	intron (NM_176877, intron 41 of 42)	L3|LINE|CR1	-50499	NM_001164835	54596		NM_019079	ENSG00000240563	L1TD1	ECAT11	LINE1 type transposase domain containing 1	protein-coding
93712	chr17	19505101	19505700	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-28454	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
195309	chr6	36590271	36590650	+	0	NA	Intergenic	Intergenic	-3853	NR_036610	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
112994	chr19	7889271	7889430	+	0	NA	intron (NM_001268285, intron 1 of 1)	AluSx|SINE|Alu	840	NM_025061	80131		NM_025061	ENSG00000171017	LRRC8E	-	leucine rich repeat containing 8 VRAC subunit E	protein-coding
152914	chr22	22767551	22767850	+	0	NA	Intergenic	Intergenic	-55076	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
15840	chr1	151350071	151350450	+	0	NA	Intergenic	Intergenic	-3008	NM_001025603	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
155723	chr22	39131251	39131550	+	0	NA	3' UTR (NM_175709, exon 6 of 6)	3' UTR (NM_175709, exon 6 of 6)	21280	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
55414	chr12	104483171	104483530	+	0	NA	intron (NM_018413, intron 1 of 2)	AluSx1|SINE|Alu	26402	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
186671	chr5	138647371	138648400	+	0	NA	Intergenic	Intergenic	-72484	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
39031	chr11	47762271	47763000	+	0	NA	intron (NM_015308, intron 2 of 16)	AluSz|SINE|Alu	4706	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
175898	chr4	80127271	80127780	+	0	NA	Intergenic	Intergenic	-54053	NM_001286780	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
120947	chr19	45689951	45690050	+	0	NA	intron (NM_177542, intron 1 of 3)	AluSx|SINE|Alu	1953	NM_001369752	6633		NM_004597	ENSG00000125743	SNRPD2	SMD2|SNRPD1|Sm-D2	small nuclear ribonucleoprotein D2 polypeptide	protein-coding
17599	chr1	156889951	156890880	+	0	NA	Intergenic	Intergenic	-3303	NM_001353682	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
221409	chr8	123530071	123530930	+	0	NA	intron (NM_148177, intron 1 of 5)	intron (NM_148177, intron 1 of 5)	1643	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
63558	chr14	20347021	20347280	+	0	NA	intron (NM_001042618, intron 4 of 15)	AluSz|SINE|Alu	3515	NM_001042618	10038		NM_005484	ENSG00000129484	PARP2	ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2	poly(ADP-ribose) polymerase 2	protein-coding
16982	chr1	155969501	155969980	+	0	NA	intron (NM_001350112, intron 1 of 21)	intron (NM_001350112, intron 1 of 21)	8435	NM_001350111	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
59066	chr13	20776451	20776750	+	0	NA	TTS (NM_022459)	TTS (NM_022459)	-2639	NM_001318939	221143		NM_174928	ENSG00000150456	EEF1AKMT1	ESP13|N6AMT2|eEF1A-KMT	EEF1A lysine methyltransferase 1	protein-coding
89426	chr16	88936021	88937130	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	-2696	NR_168285	100129697		NM_001290330		LOC100129697	-	uncharacterized LOC100129697	ncRNA
169928	chr3	178348671	178349330	+	0	NA	Intergenic	LTR12|LTR|ERV1	-70201	NR_046786	100874330		NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA
108692	chr18	77050021	77050280	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-33095	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
122691	chr19	49892621	49894450	+	0	NA	intron (NM_001385639, intron 5 of 7)	intron (NM_001385639, intron 5 of 7)	3352	NM_001385639	259307		NM_152899	ENSG00000104951	IL4I1	FIG1|LAAO|LAO|hIL4I1	interleukin 4 induced 1	protein-coding
168238	chr3	141371851	141371950	+	0	NA	intron (NM_001376119, intron 2 of 3)	intron (NM_001376119, intron 2 of 3)	3396	NM_001376113	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
151855	chr22	18577201	18578350	+	0	NA	Intergenic	CpG	-28947	NR_003563	728233		NR_003563	ENSG00000290425	PI4KAP1	-	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudo
198088	chr6	90275801	90276000	+	0	NA	intron (NM_021813, intron 1 of 8)	AluSx|SINE|Alu	20943	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
112129	chr19	5604371	5604930	+	0	NA	exon (NM_014649, exon 11 of 21)	exon (NM_014649, exon 11 of 21)	18126	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
87208	chr16	69443751	69445250	+	0	NA	intron (NM_030579, intron 1 of 4)	intron (NM_030579, intron 1 of 4)	19881	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
28241	chr10	45547951	45548250	+	0	NA	intron (NM_145021, intron 1 of 6)	intron (NM_145021, intron 1 of 6)	-12729	NM_001002266	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
209755	chr7	87208371	87208530	+	0	NA	intron (NR_138030, intron 1 of 3)	THE1B-int|LTR|ERVL-MaLR	11282	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
195003	chr6	35403751	35404250	+	0	NA	intron (NM_001171818, intron 3 of 8)	intron (NM_001171818, intron 3 of 8)	-48338	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
186358	chr5	134850451	134850830	+	0	NA	intron (NM_001135586, intron 1 of 1)	AluSq2|SINE|Alu	4672	NM_001300894	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
194405	chr6	33018001	33018200	+	0	NA	Intergenic	L2|LINE|L2	-8509	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
76121	chr15	72518951	72519050	+	0	NA	intron (NM_005744, intron 2 of 13)	intron (NM_005744, intron 2 of 13)	44670	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
227095	chr9	85726721	85727200	+	0	NA	intron (NM_001330701, intron 1 of 25)	Charlie6|DNA|hAT-Charlie	14994	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
180443	chr5	10566001	10566400	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	2130	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
205832	chr7	24826301	24827200	+	0	NA	intron (NM_015550, intron 16 of 22)	intron (NM_015550, intron 16 of 22)	65871	NM_145322	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
113487	chr19	10061901	10062130	+	0	NA	intron (NR_027300, intron 19 of 29)	intron (NR_027300, intron 19 of 29)	20659	NR_027300	388503		NM_001013640	ENSG00000291164	C3P1	CPLP	complement component 3 precursor pseudogene	pseudo
137846	chr2	200735551	200735930	+	0	NA	promoter-TSS (NR_037886)	promoter-TSS (NR_037886)	-563	NR_037886	100507140		NR_037886		LINC01792	-	long intergenic non-protein coding RNA 1792	ncRNA
141648	chr2	241738351	241738650	+	0	NA	intron (NM_001352824, intron 2 of 9)	intron (NM_001352824, intron 2 of 9)	3870	NM_152783	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
175866	chr4	79980071	79980230	+	0	NA	intron (NM_001145794, intron 14 of 15)	intron (NM_001145794, intron 14 of 15)	93079	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
223450	chr8	143981121	143982000	+	0	NA	intron (NR_134234, intron 9 of 10)	intron (NR_134234, intron 9 of 10)	-4815	NM_000445	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
176334	chr4	88219151	88219680	+	0	NA	intron (NM_001348985, intron 1 of 16)	L2a|LINE|L2	12211	NM_001348985	9429		NM_004827	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|CDw388|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1	ATP binding cassette subfamily G member 2 (JR blood group)	protein-coding
148445	chr20	63980701	63981930	+	0	NA	exon (NM_012469, exon 1 of 21)	exon (NM_012469, exon 1 of 21)	183	NM_012469	24148		NM_012469	ENSG00000101161	PRPF6	ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6	pre-mRNA processing factor 6	protein-coding
217224	chr8	26514671	26515430	+	0	NA	intron (NM_001197293, intron 1 of 13)	CpG	1019	NM_001197293	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
191018	chr6	3093001	3093200	+	0	NA	intron (NM_001354931, intron 6 of 9)	CpG	24606	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
100774	chr17	63996601	63996800	+	0	NA	non-coding (NR_126169, exon 3 of 3)	non-coding (NR_126169, exon 3 of 3)	-1651	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
36770	chr11	9396221	9396480	+	0	NA	intron (NM_006391, intron 1 of 24)	AluSz|SINE|Alu	11698	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
185523	chr5	131334121	131334580	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA4|LINE|L1	70297	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
149673	chr21	33640101	33640300	+	0	NA	intron (NM_145858, intron 1 of 12)	intron (NM_145858, intron 1 of 12)	1541	NM_145858	9946		NM_145311	ENSG00000205758	CRYZL1	4P11|FERRY4|Fy-4|QOH-1	crystallin zeta like 1	protein-coding
52123	chr12	54200651	54200750	+	0	NA	Intergenic	Intergenic	-11706	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
125706	chr2	20424401	20425980	+	0	NA	Intergenic	Intergenic	-21884	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
61668	chr13	73969501	73969700	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	164329	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
176001	chr4	82124001	82124250	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	249866	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
132432	chr2	105833651	105833950	+	0	NA	intron (NM_001004722, intron 2 of 3)	L1MA5|LINE|L1	-18047	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
48324	chr12	9027151	9028530	+	0	NA	Intergenic	Intergenic	37230	NR_034140	253128		NM_182550	ENSG00000214851	LINC00612	C12orf33	long intergenic non-protein coding RNA 612	ncRNA
53747	chr12	68647001	68647850	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluSx|SINE|Alu	-20050	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
1497	chr1	2764951	2765950	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	35418	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
76828	chr15	77182551	77182650	+	0	NA	intron (NM_001385027, intron 5 of 6)	AluJb|SINE|Alu	42804	NR_026813	81698		NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	ncRNA
160397	chr3	28151751	28152130	+	0	NA	Intergenic	Intergenic	-89679	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
207908	chr7	50594301	50594500	+	0	NA	intron (NM_001371008, intron 15 of 15)	intron (NM_001371008, intron 15 of 15)	-28995	NM_001082971	1644		NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
7988	chr1	37935971	37936300	+	0	NA	intron (NM_001365824, intron 7 of 24)	intron (NM_001365824, intron 7 of 24)	-4344	NR_158631	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
38346	chr11	44571721	44571980	+	0	NA	intron (NM_002231, intron 1 of 9)	AluSz6|SINE|Alu	6187	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
143580	chr20	31673721	31674400	+	0	NA	intron (NR_134257, intron 1 of 2)	MIRb|SINE|MIR	36148	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
20780	chr1	201022551	201024800	+	0	NA	promoter-TSS (NM_001252103)	promoter-TSS (NM_001252103)	39	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
61377	chr13	51444901	51445400	+	0	NA	3' UTR (NM_001039938, exon 3 of 3)	3' UTR (NM_001039938, exon 3 of 3)	7886	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
31015	chr10	88793571	88794250	+	0	NA	Intergenic	Intergenic	-8820	NM_001128215	340654		NM_001128215	ENSG00000173239	LIPM	LIPL3|bA304I5.1	lipase family member M	protein-coding
226386	chr9	70393121	70393450	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	21372	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
154248	chr22	31613151	31613680	+	0	NA	exon (NM_014775, exon 25 of 32)	exon (NM_014775, exon 25 of 32)	8116	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
117027	chr19	18922971	18923130	+	0	NA	intron (NM_019070, intron 6 of 12)	intron (NM_019070, intron 6 of 12)	3335	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
52788	chr12	56710771	56711130	+	0	NA	Intergenic	AluSc8|SINE|Alu	14349	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
56813	chr12	120216321	120217050	+	0	NA	intron (NM_001080855, intron 6 of 11)	intron (NM_001080855, intron 6 of 11)	15394	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
72118	chr15	28953151	28953450	+	0	NA	intron (NM_001353793, intron 1 of 12).2	L2|LINE|L2	19296	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
199537	chr6	118800171	118801280	+	0	NA	Intergenic	Intergenic	18017	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
139458	chr2	223908351	223908650	+	0	NA	intron (NM_020830, intron 3 of 11)	intron (NM_020830, intron 3 of 11)	36835	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
93224	chr17	17835951	17837300	+	0	NA	intron (NM_001005291, intron 1 of 19)	CpG	361	NM_001005291	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
170799	chr3	189133601	189133800	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-38271	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
207658	chr7	45082121	45082730	+	0	NA	exon (NM_001146334, exon 2 of 8)	exon (NM_001146334, exon 2 of 8)	6544	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
176280	chr4	87092871	87094000	+	0	NA	intron (NM_001313959, intron 6 of 19)	intron (NM_001313959, intron 6 of 19)	86434	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
71386	chr14	105510651	105511030	+	0	NA	Intergenic	AluSc8|SINE|Alu	-15743	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
143669	chr20	31967821	31968900	+	0	NA	exon (NM_001011718, exon 1 of 3)	exon (NM_001011718, exon 1 of 3)	209	NM_001011718	343702		NM_001011718	ENSG00000260903	XKR7	C20orf159|dJ310O13.4	XK related 7	protein-coding
149774	chr21	34825951	34826250	+	0	NA	intron (NM_001122607, intron 4 of 4)	MLT1C|LTR|ERVL-MaLR	62599	NM_001122607	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
101576	chr17	68051701	68051900	+	0	NA	Intergenic	LTR12C|LTR|ERV1	15840	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
100673	chr17	63751771	63752280	+	0	NA	exon (NM_020198, exon 12 of 13)	exon (NM_020198, exon 12 of 13)	-10039	NM_001165970	92335		NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk	STE20 related adaptor alpha	protein-coding
11153	chr1	86868551	86868650	+	0	NA	intron (NR_144512, intron 3 of 4)	intron (NR_144512, intron 3 of 4)	45526	NM_004261	9403		NM_004261	ENSG00000183291	SELENOF	SEP15	selenoprotein F	protein-coding
35182	chr11	786421	786830	+	0	NA	TTS (NM_016564)	TTS (NM_016564)	3465	NM_016564	51286		NM_016564	ENSG00000184524	CEND1	BM88	cell cycle exit and neuronal differentiation 1	protein-coding
1007	chr1	1852171	1853330	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	38337	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
153581	chr22	26676351	26676450	+	0	NA	TTS (NR_003491)	TTS (NR_003491)	3557	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
72811	chr15	40101151	40101880	+	0	NA	intron (NM_001003943, intron 3 of 3)	MIR1_Amn|SINE|MIR	4571	NM_001003942	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
220222	chr8	96278421	96278900	+	0	NA	intron (NM_001290225, intron 2 of 10)	intron (NM_001290225, intron 2 of 10)	16758	NM_014754	9791		NM_014754	ENSG00000156471	PTDSS1	LMHD|PSS1|PSSA	phosphatidylserine synthase 1	protein-coding
46855	chr11	133918421	133920000	+	0	NA	intron (NM_001277285, intron 18 of 19)	intron (NM_001277285, intron 18 of 19)	-20629	NR_039846	100616119		NR_039846	ENSG00000284020	MIR4697	-	microRNA 4697	ncRNA
164899	chr3	71111251	71111350	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	19286	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
72778	chr15	39919471	39920300	+	0	NA	exon (NM_007223, exon 1 of 3)	exon (NM_007223, exon 1 of 3)	381	NM_001271854	11245		NM_007223	ENSG00000166073	GPR176	HB-954	G protein-coupled receptor 176	protein-coding
203413	chr7	215421	215680	+	0	NA	intron (NM_020223, intron 3 of 9)	intron (NM_020223, intron 3 of 9)	22979	NM_020223	56975		NM_020223	ENSG00000177706	FAM20C	DMP-4|DMP4|G-CK|GEF-CK|RNS	FAM20C golgi associated secretory pathway kinase	protein-coding
182257	chr5	57189071	57189630	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluSx1|SINE|Alu	13902	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
86138	chr16	57688821	57689080	+	0	NA	3' UTR (NM_001308360, exon 11 of 11)	3' UTR (NM_001308360, exon 11 of 11)	-5856	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
237343	chrX	118531321	118532330	+	0	NA	intron (NM_144658, intron 1 of 52)	AluSx1|SINE|Alu	35916	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
136473	chr2	177210901	177211100	+	0	NA	TTS (NR_157853)	TTS (NR_157853)	1411	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
183369	chr5	77218451	77218550	+	0	NA	intron (NM_001029853, intron 1 of 20)	intron (NM_001029853, intron 1 of 20)	7820	NM_003719	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
32820	chr10	109939501	109939700	+	0	NA	Intergenic	L1ME3A|LINE|L1	-16047	NM_001167604	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
107229	chr18	36809571	36810080	+	0	NA	intron (NM_001271955, intron 2 of 4)	intron (NM_001271955, intron 2 of 4)	19177	NM_001271953	25941		NM_015476	ENSG00000134779	TPGS2	C18orf10|HMFN0601|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
237227	chrX	109728101	109728800	+	0	NA	intron (NM_022977, intron 1 of 16)	intron (NM_022977, intron 1 of 16)	-4061	NR_158569	105373311		NR_158569		LOC105373311	-	uncharacterized LOC105373311	ncRNA
116421	chr19	18009451	18010150	+	0	NA	exon (NM_015683, exon 5 of 8)	exon (NM_015683, exon 5 of 8)	1630	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
210779	chr7	100723251	100723550	+	0	NA	3' UTR (NM_000799, exon 5 of 5)	3' UTR (NM_000799, exon 5 of 5)	2932	NM_000799	2056		NM_000799	ENSG00000130427	EPO	DBAL|ECYT5|EP|MVCD2	erythropoietin	protein-coding
5987	chr1	26966121	26966400	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5792	NM_152365	126695		NM_152365	ENSG00000175707	KDF1	C1orf172|ECTD12	keratinocyte differentiation factor 1	protein-coding
1238	chr1	2284001	2284250	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	55806	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
149145	chr21	17791821	17792280	+	0	NA	3' UTR (NM_001100420, exon 5 of 5)	3' UTR (NM_001100420, exon 5 of 5)	459	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
133484	chr2	119929401	119930450	+	0	NA	intron (NM_002830, intron 13 of 26)	intron (NM_002830, intron 13 of 26)	-83152	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
58899	chr13	19631471	19632030	+	0	NA	Intergenic	AluJb|SINE|Alu	-1909	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
19311	chr1	173205251	173206080	+	0	NA	promoter-TSS (NM_001297562)	promoter-TSS (NM_001297562)	-133	NM_001297562	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
108375	chr18	68723251	68723550	+	0	NA	intron (NM_001093729, intron 2 of 9)	THE1C-int|LTR|ERVL-MaLR	8184	NM_001093729	79839		NM_024781	ENSG00000150636	CCDC102B	ACY1L|AN|C18orf14|HsT1731	coiled-coil domain containing 102B	protein-coding
184553	chr5	102759621	102760300	+	0	NA	intron (NM_001364588, intron 1 of 24)	L2b|LINE|L2	4655	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
86831	chr16	67891321	67891580	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1804	NM_006742	5681		NM_006742	ENSG00000159792	PSKH1	-	protein serine kinase H1	protein-coding
200995	chr6	139534301	139535250	+	0	NA	Intergenic	Intergenic	-60179	NR_033919	645434		NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA
226515	chr9	71878471	71878630	+	0	NA	intron (NM_016014, intron 1 of 4)	L1MEh|LINE|L1	32643	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
108840	chr18	79151101	79151530	+	0	NA	intron (NM_198531, intron 6 of 29)	L1M4|LINE|L1	81921	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
54341	chr12	89674321	89674730	+	0	NA	intron (NM_001366524, intron 1 of 21)	intron (NM_001366524, intron 1 of 21)	34313	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
51376	chr12	51849771	51850430	+	0	NA	intron (NR_135803, intron 1 of 2)	intron (NR_135803, intron 1 of 2)	-1382	NM_001384995	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
202124	chr6	154796501	154796930	+	0	NA	intron (NM_001286199, intron 7 of 20)	AluSz|SINE|Alu	-56645	NR_036100	100422821		NR_036100	ENSG00000264814	MIR1273C	-	microRNA 1273c	ncRNA
14680	chr1	145845021	145846700	+	0	NA	intron (NM_001012758, intron 1 of 7)	CpG	230	NM_001012758	200035		NM_001012758	ENSG00000186364	NUDT17	-	nudix hydrolase 17	protein-coding
63746	chr14	21228951	21230490	+	0	NA	intron (NM_001077443, intron 4 of 7)	intron (NM_001077443, intron 4 of 7)	-22820	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
146908	chr20	51554151	51555050	+	0	NA	intron (NM_001258292, intron 1 of 9)	MIRb|SINE|MIR	8239	NM_001258294	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
67544	chr14	71166551	71166650	+	0	NA	Intergenic	LTR50|LTR|ERVL	-153876	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
72941	chr15	40444751	40445150	+	0	NA	intron (NR_125372, intron 1 of 4)	intron (NR_125372, intron 1 of 4)	3997	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
87868	chr16	77584271	77584530	+	0	NA	Intergenic	Intergenic	-138092	NM_001243657	283927		NM_001105663	ENSG00000140876	NUDT7	-	nudix hydrolase 7	protein-coding
123874	chr19	55278701	55278900	+	0	NA	intron (NM_001130106, intron 3 of 8)	AluSz6|SINE|Alu	1056	NM_001297600	23640		NM_012267	ENSG00000133265	HSPBP1	FES1	HSPA (Hsp70) binding protein 1	protein-coding
181348	chr5	40437441	40438300	+	0	NA	Intergenic	Intergenic	-242045	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
192688	chr6	26272201	26273500	+	0	NA	promoter-TSS (NM_003525)	promoter-TSS (NM_003525)	-81	NM_003525	8346		NM_003525	ENSG00000278588	H2BC10	H2B/k|H2BC4|H2BC6|H2BC7|H2BC8|H2BFK|HIST1H2BI	H2B clustered histone 10	protein-coding
165501	chr3	100209721	100210350	+	0	NA	Intergenic	Intergenic	24211	NR_028357	644444		NR_028357	ENSG00000293379	TMEM30CP	CDC50C|TMEM30C	transmembrane protein 30C, pseudogene	pseudo
189373	chr5	172697021	172698250	+	0	NA	Intergenic	Intergenic	35470	NR_049799	100847029		NR_049799	ENSG00000265160	MIR5003	-	microRNA 5003	ncRNA
179609	chr4	185513371	185513950	+	0	NA	intron (NM_014476, intron 4 of 7)	intron (NM_014476, intron 4 of 7)	21847	NM_001114107	27295		NM_014476	ENSG00000154553	PDLIM3	ALP	PDZ and LIM domain 3	protein-coding
381	chr1	1038451	1039150	+	0	NA	intron (NM_198576, intron 3 of 35)	intron (NM_198576, intron 3 of 35)	4807	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
92029	chr17	7479301	7480700	+	0	NA	promoter-TSS (NM_001128833).2	promoter-TSS (NM_001128833).2	-369	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
100145	chr17	58520721	58521530	+	0	NA	exon (NM_001256822, exon 10 of 12)	exon (NM_001256822, exon 10 of 12)	1288	NR_110810	101927688		NR_110810	ENSG00000264672	SEPTIN4-AS1	SEPT4-AS1	SEPTIN4 antisense RNA 1	ncRNA
177407	chr4	112284651	112285140	+	0	NA	intron (NM_052864, intron 1 of 1)	(A)n|Simple_repeat|Simple_repeat	1009	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
192415	chr6	24859871	24860030	+	0	NA	intron (NM_001286447, intron 8 of 13)	intron (NM_001286447, intron 8 of 13)	17320	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
126883	chr2	32165221	32166530	+	0	NA	promoter-TSS (NM_001330477)	promoter-TSS (NM_001330477)	11	NM_017964	55676		NM_017964	ENSG00000152683	SLC30A6	MST103|MSTP103|ZNT6	solute carrier family 30 member 6	protein-coding
134676	chr2	144475051	144475550	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-44314	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
36110	chr11	3085901	3086300	+	0	NA	Intergenic	Intergenic	-28677	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
146658	chr20	50450871	50451450	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-59161	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138158	chr2	202529821	202530350	+	0	NA	intron (NM_001204, intron 7 of 12)	L2b|LINE|L2	-104884	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
87161	chr16	69322401	69322800	+	0	NA	exon (NM_013245, exon 10 of 11)	exon (NM_013245, exon 10 of 11)	7988	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
28440	chr10	48634171	48634730	+	0	NA	intron (NM_001256025, intron 1 of 9)	intron (NM_001256025, intron 1 of 9)	18052	NM_001256025	58504		NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
234170	chrX	11759281	11760450	+	0	NA	exon (NM_001193270, exon 2 of 13)	exon (NM_001193270, exon 2 of 13)	218	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
67052	chr14	67681071	67681230	+	0	NA	intron (NM_016026, intron 6 of 6)	MLT1B|LTR|ERVL-MaLR	-6518	NM_006370	10490		NM_006370	ENSG00000100568	VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
56943	chr12	120474751	120475050	+	0	NA	intron (NM_001037494, intron 1 of 2)	intron (NM_001037494, intron 1 of 2)	5058	NM_001037494	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
137024	chr2	190694871	190695030	+	0	NA	Intergenic	Intergenic	35792	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
3785	chr1	16702201	16702400	+	0	NA	intron (NR_026567, intron 6 of 10)	intron (NR_026567, intron 6 of 10)	17857	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
156527	chr22	41416871	41417550	+	0	NA	Intergenic	AluSc|SINE|Alu	29591	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
179959	chr5	787171	787330	+	0	NA	Intergenic	Intergenic	-2521	NM_001351303	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
220008	chr8	90471621	90472080	+	0	NA	Intergenic	Intergenic	134213	NR_104062	101937451		NR_104062	ENSG00000253799	LINC01030	-	long intergenic non-protein coding RNA 1030	ncRNA
6445	chr1	28242651	28243100	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	6751	NM_016311	93974		NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
11335	chr1	89538371	89538600	+	0	NA	intron (NM_001369819, intron 2 of 6)	intron (NM_001369819, intron 2 of 6)	13656	NM_001369819	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
93172	chr17	17794371	17794930	+	0	NA	exon (NM_030665, exon 3 of 6)	exon (NM_030665, exon 3 of 6)	-15121	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
189079	chr5	170282401	170282600	+	0	NA	intron (NM_005565, intron 3 of 20)	MIRb|SINE|MIR	15277	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
175962	chr4	81392201	81392500	+	0	NA	Intergenic	Intergenic	79557	NM_152545	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
137942	chr2	201122371	201122980	+	0	NA	intron (NR_147255, intron 1 of 4)	L2c|LINE|L2	3959	NM_001127183	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
69067	chr14	91969271	91969430	+	0	NA	3' UTR (NM_004239, exon 21 of 21)	3' UTR (NM_004239, exon 21 of 21)	-21656	NM_001384162	10516		NM_006329	ENSG00000140092	FBLN5	ADCL2|ARCL1A|ARMD3|CMT1H|DANCE|EVEC|FIBL-5|HNARMD|UP50	fibulin 5	protein-coding
38004	chr11	35076171	35076330	+	0	NA	Intergenic	Intergenic	61782	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
79263	chr16	492351	492530	+	0	NA	intron (NM_001370401, intron 6 of 14)	intron (NM_001370401, intron 6 of 14)	17516	NM_001142272	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
146371	chr20	49274601	49274800	+	0	NA	intron (NM_021035, intron 2 of 13)	AluSx1|SINE|Alu	3357	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
201275	chr6	144248001	144248550	+	0	NA	Intergenic	Charlie17a|DNA|hAT-Charlie	-43462	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
194742	chr6	33862571	33862730	+	0	NA	Intergenic	Intergenic	34257	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
186727	chr5	139275021	139275300	+	0	NA	intron (NM_199189, intron 1 of 17)	(T)n|Simple_repeat|Simple_repeat	-1020	NR_145749	109616975		NR_145749	ENSG00000252213	SNORA74D	-	small nucleolar RNA, H/ACA box 74D	snoRNA
39540	chr11	61107871	61108500	+	0	NA	intron (NM_014207, intron 1 of 10)	MIRc|SINE|MIR	5696	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
154654	chr22	36342201	36342430	+	0	NA	intron (NM_002473, intron 2 of 40)	MIR|SINE|MIR	45652	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
102149	chr17	75107071	75107430	+	0	NA	Intergenic	AluJr|SINE|Alu	-2719	NM_001304272	79637		NM_024585	ENSG00000125449	ARMC7	-	armadillo repeat containing 7	protein-coding
12303	chr1	100905101	100905300	+	0	NA	intron (NM_133496, intron 2 of 10)	L1MCc|LINE|L1	9110	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
232147	chr9	134059771	134060200	+	0	NA	intron (NM_007371, intron 1 of 11)	intron (NM_007371, intron 1 of 11)	5695	NR_135126	100130548		NR_135126	ENSG00000235138	LOC100130548	-	uncharacterized LOC100130548	ncRNA
10866	chr1	77983271	77983430	+	0	NA	intron (NM_001317099, intron 1 of 3)	LTR5_Hs|LTR|ERVK	3166	NM_001317099	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
21597	chr1	206553001	206553300	+	0	NA	intron (NM_182663, intron 2 of 5)	AluY|SINE|Alu	-4014	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
75167	chr15	64650671	64650830	+	0	NA	intron (NM_015042, intron 3 of 9)	intron (NM_015042, intron 3 of 9)	52531	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
190419	chr5	179827071	179827230	+	0	NA	intron (NM_003900, intron 5 of 7).2	intron (NM_003900, intron 5 of 7).2	6245	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
215878	chr8	7686321	7686830	+	0	NA	Intergenic	CpG	-83009	NR_046351								
129635	chr2	70135351	70136730	+	0	NA	Intergenic	Intergenic	-10724	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
156370	chr22	41069001	41069400	+	0	NA	Intergenic	L2c|LINE|L2	4521	NR_132979	106635682		NR_132979		SNORD140	-	small nucleolar RNA, C/D box 140	snoRNA
148702	chr21	6437851	6438030	+	0	NA	Intergenic	Intergenic	22142	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
207244	chr7	43806751	43807050	+	0	NA	intron (NM_000712, intron 7 of 7)	intron (NM_000712, intron 7 of 7)	48220	NM_000712	644		NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA|BVRalpha	biliverdin reductase A	protein-coding
128091	chr2	47899601	47900130	+	0	NA	intron (NM_001190274, intron 1 of 22)	intron (NM_001190274, intron 1 of 22)	5473	NM_001374325	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
156845	chr22	41966571	41967250	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-2533	NM_001363845	55964		NM_019106	ENSG00000100167	SEPTIN3	SEP3|SEPT3|bK250D10.3	septin 3	protein-coding
102092	chr17	74971921	74973400	+	0	NA	promoter-TSS (NM_030630)	promoter-TSS (NM_030630)	99	NM_030630	283987		NM_030630	ENSG00000167861	HID1	17orf28|C17orf28|DEE105|DMC1|HID-1	HID1 domain containing	protein-coding
154904	chr22	37181971	37182480	+	0	NA	exon (NM_182486, exon 3 of 4)	exon (NM_182486, exon 3 of 4)	6022	NM_031910	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
40038	chr11	62702371	62702530	+	0	NA	intron (NR_037948, intron 4 of 11)	intron (NR_037948, intron 4 of 11)	3865	NM_001130702	26580		NM_032667	ENSG00000168000	BSCL2	GNG3LG|HMN5|HMN5C|HMND13|PELD|SPG17	BSCL2 lipid droplet biogenesis associated, seipin	protein-coding
205936	chr7	25950721	25951950	+	0	NA	Intergenic	CpG	-1349	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
41736	chr11	66670821	66671330	+	0	NA	intron (NM_031492, intron 2 of 3)	intron (NM_031492, intron 2 of 3)	6812	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
47363	chr12	2259351	2259650	+	0	NA	intron (NM_199460, intron 3 of 49)	intron (NM_199460, intron 3 of 49)	-10276	NR_046769	100874370		NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
127738	chr2	43569751	43570350	+	0	NA	intron (NR_144316, intron 14 of 36)	intron (NR_144316, intron 14 of 36)	25924	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
179731	chr5	212671	212830	+	0	NA	intron (NM_145265, intron 2 of 2)	intron (NM_145265, intron 2 of 2)	5403	NM_145265	133957		NM_145265	ENSG00000164366	CCDC127	-	coiled-coil domain containing 127	protein-coding
154753	chr22	36504921	36505330	+	0	NA	intron (NM_024955, intron 2 of 8)	intron (NM_024955, intron 2 of 8)	1915	NM_001363041	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
53825	chr12	69332771	69333130	+	0	NA	Intergenic	LTR22|LTR|ERVK	-15431	NM_000239	4069		NM_000239	ENSG00000090382	LYZ	LYZF1|LZM	lysozyme	protein-coding
74427	chr15	59174901	59175130	+	0	NA	intron (NM_004998, intron 19 of 27)	MIR|SINE|MIR	-3753	NR_031750	100313886		NR_031750	ENSG00000253030	MIR2116	mir-2116	microRNA 2116	ncRNA
2729	chr1	10662021	10662280	+	0	NA	intron (NM_017766, intron 5 of 15)	(AC)n|Simple_repeat|Simple_repeat	134496	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
23176	chr1	226800101	226800700	+	0	NA	Intergenic	AluJb|SINE|Alu	-61225	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
101451	chr17	67448051	67448780	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-23074	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
44289	chr11	102314601	102314980	+	0	NA	Intergenic	Charlie2a|DNA|hAT-Charlie	-2694	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
212775	chr7	130050851	130051750	+	0	NA	promoter-TSS (NM_001363701)	promoter-TSS (NM_001363701)	74	NM_016478	51530		NM_016478	ENSG00000091732	ZC3HC1	HSPC216|NIPA	zinc finger C3HC-type containing 1	protein-coding
34217	chr10	129959351	129959650	+	0	NA	intron (NM_001375379, intron 4 of 15)	CpG-3520	4774	NM_001005463	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
237049	chrX	103276221	103276930	+	0	NA	intron (NM_001012979, intron 1 of 2)	intron (NM_001012979, intron 1 of 2)	175	NM_001012979	340543		NM_001012979	ENSG00000204065	TCEAL5	WEX4	transcription elongation factor A like 5	protein-coding
183063	chr5	73504521	73504780	+	0	NA	intron (NM_001037637, intron 5 of 5)	intron (NM_001037637, intron 5 of 5)	6225	NM_001207	689		NM_001207	ENSG00000145741	BTF3	BETA-NAC|BTF3a|BTF3b|NACB	basic transcription factor 3	protein-coding
107047	chr18	32135951	32136930	+	0	NA	Intergenic	AluJb|SINE|Alu	43834	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
68211	chr14	76908601	76909230	+	0	NA	Intergenic	Intergenic	-50723	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
153233	chr22	23972571	23972730	+	0	NA	TTS (NM_001084393)	TTS (NM_001084393)	1791	NM_001084392	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
92197	chr17	7843401	7844500	+	0	NA	intron (NM_001348716, intron 1 of 22)	CpG	4033	NM_001080424	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
15910	chr1	151692271	151692450	+	0	NA	intron (NM_030918, intron 8 of 11)	intron (NM_030918, intron 8 of 11)	24443	NM_001172649	11189		NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP Elav-like family member 3	protein-coding
99345	chr17	49860171	49860330	+	0	NA	Intergenic	Intergenic	-12233	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
132997	chr2	111534751	111535350	+	0	NA	Intergenic	Intergenic	-39889	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
78696	chr15	96357801	96358000	+	0	NA	Intergenic	Intergenic	24135	NM_001145157	7026		NM_021005	ENSG00000185551	NR2F2	ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SRXX5|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding
202999	chr6	163170351	163170550	+	0	NA	intron (NM_001080378, intron 5 of 5)	intron (NM_001080378, intron 5 of 5)	21552	NR_122120	729658		NR_122120	ENSG00000225683	PACRG-AS3	-	PACRG antisense RNA 3	ncRNA
130641	chr2	86105421	86106900	+	0	NA	promoter-TSS (NM_017952)	promoter-TSS (NM_017952)	-75	NM_017952	55037		NM_017952	ENSG00000132300	PTCD3	COXPD51|MRP-S39|mS39	pentatricopeptide repeat domain 3	protein-coding
60500	chr13	41321921	41322380	+	0	NA	intron (NM_024561, intron 4 of 19)	FLAM_A|SINE|Alu	-10112	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
237192	chrX	107773871	107774230	+	0	NA	intron (NM_198057, intron 1 of 2)	MIR3|SINE|MIR	1737	NM_198057	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
141254	chr2	239818671	239819050	+	0	NA	Intergenic	Intergenic	56000	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
195530	chr6	37289571	37290380	+	0	NA	intron (NM_017772, intron 7 of 12)	intron (NM_017772, intron 7 of 12)	-31820	NR_104443								
45043	chr11	117042121	117042380	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	56178	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
44938	chr11	116774621	116774880	+	0	NA	3' UTR (NM_003904, exon 14 of 14)	3' UTR (NM_003904, exon 14 of 14)	-1752	NM_001159736	84811		NM_032725	ENSG00000137656	BUD13	Cwc26|fSAP71	BUD13 homolog	protein-coding
192293	chr6	20589271	20589430	+	0	NA	intron (NM_017774, intron 4 of 15)	intron (NM_017774, intron 4 of 15)	54893	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
118456	chr19	35871451	35871550	+	0	NA	intron (NM_001024807, intron 4 of 16)	intron (NM_001024807, intron 4 of 16)	2926	NM_001024807	333		NM_005166	ENSG00000105290	APLP1	APLP	amyloid beta precursor like protein 1	protein-coding
42672	chr11	72588221	72588680	+	0	NA	intron (NM_001243784, intron 13 of 30)	intron (NM_001243784, intron 13 of 30)	17794	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
64692	chr14	32841951	32842050	+	0	NA	Intergenic	(CTTCC)n|Simple_repeat|Simple_repeat	-96879	NM_173159	64067		NM_022123	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
169839	chr3	177179371	177179530	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	17028	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
124372	chr19	58365001	58365200	+	0	NA	intron (NR_136527, intron 2 of 2)	AluSc|SINE|Alu	-2349	NM_198458	162968		NM_198458	ENSG00000174586	ZNF497	-	zinc finger protein 497	protein-coding
217575	chr8	29472251	29472830	+	0	NA	Intergenic	Intergenic	-121856	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
220464	chr8	100424771	100425130	+	0	NA	Intergenic	Intergenic	42187	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
96653	chr17	40621201	40621630	+	0	NA	Intergenic	Intergenic	26403	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
175616	chr4	76028271	76028630	+	0	NA	intron (NM_001377181, intron 1 of 5)	intron (NM_001377181, intron 1 of 5)	-4953	NM_001565	3627		NM_001565	ENSG00000169245	CXCL10	C7|IFI10|INP10|IP-10|SCYB10|crg-2|gIP-10|mob-1	C-X-C motif chemokine ligand 10	protein-coding
139981	chr2	230913551	230913880	+	0	NA	intron (NM_005683, intron 1 of 1)	intron (NM_005683, intron 1 of 1)	11527	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
94085	chr17	27578951	27579680	+	0	NA	intron (NM_001367810, intron 3 of 18)	MIR|SINE|MIR	-51873	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
92399	chr17	8324971	8325330	+	0	NA	Intergenic	Intergenic	14328	NM_025014	22899		NM_025014	ENSG00000198844	ARHGEF15	ARGEF15|E5|Ephexin5|Vsm-RhoGEF	Rho guanine nucleotide exchange factor 15	protein-coding
82710	chr16	20810951	20811050	+	0	NA	intron (NM_030941, intron 2 of 19)	intron (NM_030941, intron 2 of 19)	4473	NM_001144924	81691		NM_030941	ENSG00000005189	REXO5	NEF-sp	RNA exonuclease 5	protein-coding
122538	chr19	49637621	49638680	+	0	NA	intron (NM_006270, intron 1 of 5)	intron (NM_006270, intron 1 of 5)	1993	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
134649	chr2	144444451	144444850	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-74964	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
204647	chr7	5422301	5422730	+	0	NA	intron (NM_001080495, intron 1 of 29)	CpG-25497	1031	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
194597	chr6	33452421	33452750	+	0	NA	3' UTR (NM_001130066, exon 18 of 18)	3' UTR (NM_001130066, exon 18 of 18)	-1991	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
170508	chr3	186361951	186362400	+	0	NA	promoter-TSS (NM_001080745)	promoter-TSS (NM_001080745)	59	NM_001080745	1608		NM_001346	ENSG00000058866	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase gamma	protein-coding
211544	chr7	105429701	105430330	+	0	NA	Intergenic	Intergenic	-40625	NM_001350740	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
157257	chr22	43811771	43812980	+	0	NA	promoter-TSS (NM_022785)	promoter-TSS (NM_022785)	-70	NM_022785	64800		NM_022785	ENSG00000186976	EFCAB6	DJBP|HSCBCIP1|dJ185D5.1	EF-hand calcium binding domain 6	protein-coding
196109	chr6	42371571	42371730	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	80401	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
84032	chr16	29504221	29504600	+	0	NA	intron (NM_001355401, intron 2 of 7)	AluSx4|SINE|Alu	1464	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
26205	chr10	14561271	14561860	+	0	NA	intron (NM_001320736, intron 1 of 4)	intron (NM_001320736, intron 1 of 4)	-5385	NM_001320738	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
167940	chr3	136191271	136191630	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSg|SINE|Alu	3018	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
58525	chr12	132205351	132205850	+	0	NA	5' UTR (NM_021808, exon 2 of 7)	5' UTR (NM_021808, exon 2 of 7)	428	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
167696	chr3	130743521	130743780	+	0	NA	intron (NM_014602, intron 2 of 19)	L2b|LINE|L2	3179	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
172926	chr4	3508771	3508930	+	0	NA	non-coding (NR_110005, exon 8 of 8)	non-coding (NR_110005, exon 8 of 8)	23299	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
32569	chr10	103445051	103445350	+	0	NA	intron (NM_014976, intron 35 of 35)	MIRc|SINE|MIR	7170	NR_046344	51063		NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator family member 2	protein-coding
194411	chr6	33062071	33062250	+	0	NA	Intergenic	MER57C2|LTR|ERV1	11517	NM_033554	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
90985	chr17	2708801	2709700	+	0	NA	intron (NM_001366662, intron 1 of 25)	intron (NM_001366662, intron 1 of 25)	2514	NM_001366661	23277		NM_015229	ENSG00000132361	CLUH	CLU1	clustered mitochondria homolog	protein-coding
236557	chrX	72269821	72270530	+	0	NA	Intergenic	Intergenic	7073	NM_001007	6191		NM_001007	ENSG00000198034	RPS4X	CCG2|DXS306|RPS4|S4|SCAR|SCR10|eS4	ribosomal protein S4 X-linked	protein-coding
143819	chr20	32479521	32479850	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	3805	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
75369	chr15	65630171	65630330	+	0	NA	intron (NM_001301032, intron 1 of 7)	AluJr|SINE|Alu	6295	NM_001301031	9187		NM_004727	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 member 1	protein-coding
71361	chr14	105481601	105482650	+	0	NA	Intergenic	Intergenic	-4761	NM_001311	1396		NM_001311	ENSG00000213145	CRIP1	CRHP|CRIP|CRP-1|CRP1	cysteine rich protein 1	protein-coding
106559	chr18	21684721	21684980	+	0	NA	intron (NM_138340, intron 3 of 8)	intron (NM_138340, intron 3 of 8)	1332	NR_031565	100302135		NR_031565	ENSG00000221493	MIR320C1	MIR320C-1|MIRN320C1|hsa-mir-320c-1|mir-320c-1	microRNA 320c-1	ncRNA
217462	chr8	28743671	28744230	+	0	NA	intron (NR_073468, intron 4 of 4)	intron (NR_073468, intron 4 of 4)	42449	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
55132	chr12	98604101	98604500	+	0	NA	3' UTR (NM_002635, exon 8 of 8)	3' UTR (NM_002635, exon 8 of 8)	4665	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
146877	chr20	51499971	51501980	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	41744	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
200482	chr6	135226701	135226900	+	0	NA	Intergenic	Intergenic	-12360	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
43697	chr11	85949621	85949880	+	0	NA	Intergenic	Intergenic	94367	NM_001286159	220047		NM_173556	ENSG00000150676	CCDC83	CT148|HSD9|KP-CoT-23	coiled-coil domain containing 83	protein-coding
203295	chr6	169961501	169962500	+	0	NA	promoter-TSS (NR_027434)	promoter-TSS (NR_027434)	-623	NR_027434	100131532		NR_027434		LOC100131532	-	uncharacterized LOC100131532	ncRNA
210746	chr7	100656121	100656950	+	0	NA	promoter-TSS (NR_133946)	promoter-TSS (NR_133946)	-26	NR_133946	105375429		NR_133946		LOC105375429	-	uncharacterized LOC105375429	ncRNA
77049	chr15	78859771	78861030	+	0	NA	Intergenic	Intergenic	-12381	NM_206839	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
165386	chr3	94062501	94063790	+	0	NA	promoter-TSS (NM_001195643)	promoter-TSS (NM_001195643)	84	NM_022072	63899		NM_022072	ENSG00000178694	NSUN3	COXPD48|MST077|MSTP077	NOP2/Sun RNA methyltransferase 3	protein-coding
229261	chr9	117782671	117783500	+	0	NA	Intergenic	Intergenic	78682	NM_003266	7099		NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll like receptor 4	protein-coding
97921	chr17	45143601	45146300	+	0	NA	TTS (NM_001135707)	TTS (NM_001135707)	-3525	NM_006460	10614		NM_006460	ENSG00000186834	HEXIM1	CLP1|EDG1|HIS1|MAQ1	HEXIM P-TEFb complex subunit 1	protein-coding
197322	chr6	73262801	73263730	+	0	NA	promoter-TSS (NM_030568)	promoter-TSS (NM_030568)	-69	NM_030568	80759		NM_030568	ENSG00000135314	KHDC1	C6orf147|C6orf148|Em:AC019205.8|NDG1|bA257K9.4	KH domain containing 1	protein-coding
80932	chr16	3818151	3819000	+	0	NA	intron (NM_004380, intron 2 of 30)	AluSz|SINE|Alu	61545	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
235248	chrX	41556951	41557550	+	0	NA	intron (NM_001367721, intron 18 of 26)	intron (NM_001367721, intron 18 of 26)	109790	NM_022567	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
32738	chr10	104307601	104307950	+	0	NA	Intergenic	Intergenic	-15589	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
176015	chr4	82284371	82285700	+	0	NA	Intergenic	CpG	88956	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
129552	chr2	69827821	69828300	+	0	NA	TTS (NM_001153)	TTS (NM_001153)	-1600	NM_178439	64395		NM_178439	ENSG00000087338	GMCL1	BTBD13|GCL|GCL1|SPATA29	germ cell-less 1, spermatogenesis associated	protein-coding
27634	chr10	32950571	32951780	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	6719	NM_133376	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
17747	chr1	158998121	158999000	+	0	NA	Intergenic	Intergenic	-1416	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
125569	chr2	16151371	16151530	+	0	NA	Intergenic	L3|LINE|CR1	101023	NR_126559	104797537		NR_126559	ENSG00000236289	GACAT3	LINC01458|lncRNA-AC130710	gastric cancer associated transcript 3	ncRNA
224973	chr9	33078921	33079180	+	0	NA	Intergenic	Intergenic	-2376	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
36451	chr11	5689451	5690200	+	0	NA	promoter-TSS (NM_001199573)	promoter-TSS (NM_001199573)	35	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
167668	chr3	129974801	129975000	+	0	NA	intron (NM_007117, intron 1 of 2)	CpG	180	NM_007117	7200		NM_007117	ENSG00000170893	TRH	Pro-TRH|TRF	thyrotropin releasing hormone	protein-coding
111529	chr19	4018201	4018680	+	0	NA	intron (NM_015897, intron 2 of 10)	intron (NM_015897, intron 2 of 10)	10704	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
46380	chr11	126276251	126276550	+	0	NA	exon (NM_017547, exon 9 of 11)	exon (NM_017547, exon 9 of 11)	-6687	NM_001318777	114609		NM_052887	ENSG00000150455	TIRAP	BACTS1|Mal|MyD88-2|wyatt	TIR domain containing adaptor protein	protein-coding
127390	chr2	41840501	41841680	+	0	NA	Intergenic	Intergenic	-36465	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
223826	chr8	144900021	144900690	+	0	NA	promoter-TSS (NM_001363103)	promoter-TSS (NM_001363103)	-50	NM_001363103	58500		NM_021061	ENSG00000196150	ZNF250	ZFP647|ZNF647	zinc finger protein 250	protein-coding
150933	chr21	44262651	44262950	+	0	NA	promoter-TSS (NM_013369)	promoter-TSS (NM_013369)	-903	NM_175867	29947		NM_013369	ENSG00000142182	DNMT3L	-	DNA methyltransferase 3 like	protein-coding
42225	chr11	68044571	68044930	+	0	NA	promoter-TSS (NR_106811)	promoter-TSS (NR_106811)	-44	NR_106811	102465451		NR_106811	ENSG00000275022	MIR6753	hsa-mir-6753	microRNA 6753	ncRNA
215657	chr8	477501	477750	+	0	NA	3' UTR (NM_183421, exon 11 of 11)	3' UTR (NM_183421, exon 11 of 11)	67209	NM_001384899	157695		NM_175075	ENSG00000180190	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
125680	chr2	20316871	20317850	+	0	NA	intron (NM_001282752, intron 2 of 19)	intron (NM_001282752, intron 2 of 19)	10026	NM_001282791	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
225186	chr9	34038651	34038950	+	0	NA	intron (NM_001370059, intron 1 of 28)	SVA_C|Retroposon|SVA	10087	NM_001370064	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
237076	chrX	103680821	103681780	+	0	NA	intron (NM_001142419, intron 2 of 3)	intron (NM_001142419, intron 2 of 3)	5399	NM_012286	9643		NM_012286	ENSG00000123562	MORF4L2	MORFL2|MRGX	mortality factor 4 like 2	protein-coding
53599	chr12	68036671	68037430	+	0	NA	Intergenic	AluSx3|SINE|Alu	47605	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
81047	chr16	4313451	4314100	+	0	NA	promoter-TSS (NM_001318918).2	promoter-TSS (NM_001318918).2	-986	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
105028	chr17	82053201	82053400	+	0	NA	exon (NM_004127, exon 2 of 13)	exon (NM_004127, exon 2 of 13)	1402	NM_212492	2873		NM_004127	ENSG00000169727	GPS1	COPS1|CSN1|SGN1	G protein pathway suppressor 1	protein-coding
96334	chr17	40039751	40039850	+	0	NA	intron (NM_014815, intron 3 of 25)	AluY|SINE|Alu	-12155	NR_102369	101340251		NR_102369	ENSG00000238793	SNORD124	-	small nucleolar RNA, C/D box 124	snoRNA
234624	chrX	19863421	19863880	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	23950	NM_001353891	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
113435	chr19	9807971	9808130	+	0	NA	Intergenic	(TCTA)n|Simple_repeat|Simple_repeat	11029	NM_001316938	54850		NM_017703	ENSG00000127452	FBXL12	Fbl12	F-box and leucine rich repeat protein 12	protein-coding
121894	chr19	48369171	48369330	+	0	NA	intron (NM_012451, intron 2 of 4)	intron (NM_012451, intron 2 of 4)	4883	NM_012451	23546		NM_012451	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding
215907	chr8	8164401	8165000	+	0	NA	intron (NR_147089, intron 2 of 3)	MLT1K|LTR|ERVL-MaLR	62803	NR_147089	105379219		NR_147089		FAM85B	lncRNA-HEIM	family with sequence similarity 85 member B	ncRNA
59081	chr13	20945751	20946480	+	0	NA	intron (NR_104058, intron 2 of 5)	intron (NR_104058, intron 2 of 5)	3313	NR_104058	101930748		NR_104058	ENSG00000293217	LINC00367	-	long intergenic non-protein coding RNA 367	ncRNA
175134	chr4	55353221	55353500	+	0	NA	intron (NM_024592, intron 1 of 4)	LTR12|LTR|ERV1	7118	NM_024592	79644		NM_024592	ENSG00000128039	SRD5A3	CDG1P|CDG1Q|KRIZI|S5AR|S5AR 3|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
27353	chr10	30701101	30702650	+	0	NA	intron (NR_036438, intron 5 of 9)	intron (NR_036438, intron 5 of 9)	9601	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
7031	chr1	31926371	31926550	+	0	NA	intron (NM_080391, intron 1 of 5)	intron (NM_080391, intron 1 of 5)	11358	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
72258	chr15	30598801	30599430	+	0	NA	intron (NR_027470, intron 4 of 4).2	MADE1|DNA|TcMar-Mariner	-4915	NM_001355469	653075		NM_001355469	ENSG00000261247	GOLGA8T	-	golgin A8 family member T	protein-coding
8743	chr1	42697101	42697300	+	0	NA	exon (NM_004559, exon 6 of 8)	exon (NM_004559, exon 6 of 8)	14064	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
169765	chr3	172592021	172593850	+	0	NA	intron (NR_146714, intron 2 of 3)	L1PREC2|LINE|L1	2672	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
234723	chrX	21725571	21725730	+	0	NA	intron (NM_014332, intron 4 of 4)	intron (NM_014332, intron 4 of 4)	32466	NR_045617	23676		NM_014332	ENSG00000091482	SMPX	Chisel|Csl|DFN6|DFNX4|MPD7	small muscle protein X-linked	protein-coding
102176	chr17	75143771	75143930	+	0	NA	intron (NM_001002032, intron 3 of 3)	intron (NM_001002032, intron 3 of 3)	9443	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
202670	chr6	158785901	158786450	+	0	NA	intron (NM_003379, intron 3 of 12)	AluSx3|SINE|Alu	-21422	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
24623	chr1	246573821	246574280	+	0	NA	intron (NM_001139459, intron 1 of 8)	AluY|SINE|Alu	7594	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
65711	chr14	52797071	52797230	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-5543	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
61719	chr13	74115221	74116080	+	0	NA	intron (NM_007249, intron 1 of 7)	AluSx1|SINE|Alu	18279	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
185158	chr5	119331771	119332530	+	0	NA	intron (NM_001286815, intron 2 of 2)	intron (NM_001286815, intron 2 of 2)	-1025	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
159177	chr3	12830421	12831080	+	0	NA	intron (NM_012298, intron 11 of 12)	intron (NM_012298, intron 11 of 12)	9700	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
11213	chr1	88866071	88866530	+	0	NA	intron (NM_001514, intron 2 of 6)	AluJb|SINE|Alu	25267	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
189046	chr5	169801051	169801350	+	0	NA	intron (NR_156756, intron 25 of 52)	AluSx1|SINE|Alu	163925	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
5201	chr1	24962251	24962680	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	2545	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
199585	chr6	119080951	119081930	+	0	NA	intron (NM_001288576, intron 1 of 15)	LTR1A2|LTR|ERV1	-2776	NM_024581	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
214771	chr7	151089021	151090130	+	0	NA	intron (NM_001350103, intron 1 of 18)	intron (NM_001350103, intron 1 of 18)	3100	NM_001350103	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
111390	chr19	3748051	3748550	+	0	NA	intron (NM_001267560, intron 19 of 20)	AluSg4|SINE|Alu	13392	NM_004886	9546		NM_004886	ENSG00000011132	APBA3	MGC:15815|X11L2|mint3	amyloid beta precursor protein binding family A member 3	protein-coding
67583	chr14	71693501	71693700	+	0	NA	intron (NM_001354286, intron 14 of 24)	intron (NM_001354286, intron 14 of 24)	107302	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
151310	chr21	45549671	45550130	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	-7460	NM_001205206	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
30850	chr10	86525601	86525800	+	0	NA	Intergenic	AluSc|SINE|Alu	-3908	NM_015045	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
17969	chr1	160451251	160452000	+	0	NA	Intergenic	Intergenic	51061	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
177450	chr4	113436121	113436380	+	0	NA	Intergenic	Intergenic	143411	NM_001354279	287		NM_001148	ENSG00000145362	ANK2	ANK-2|CFAP87|FAP87|LQT4|brank-2	ankyrin 2	protein-coding
88600	chr16	85592701	85592900	+	0	NA	Intergenic	MIR|SINE|MIR	-18609	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
165628	chr3	101724371	101725680	+	0	NA	intron (NM_024548, intron 1 of 10)	intron (NM_024548, intron 1 of 10)	411	NM_001303401	79598		NM_024548	ENSG00000182504	CEP97	2810403B08Rik|LRRIQ2	centrosomal protein 97	protein-coding
71669	chr15	19409421	19409680	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-873194	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
199359	chr6	116099051	116099350	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	-1653	NM_152729	221294		NM_152729	ENSG00000178425	NT5DC1	C6orf200|LP2642|NT5C2L1	5'-nucleotidase domain containing 1	protein-coding
148381	chr20	63896001	63897230	+	0	NA	intron (NM_025219, intron 1 of 4)	L2b|LINE|L2	1489	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
75661	chr15	67746171	67746730	+	0	NA	intron (NM_145160, intron 17 of 21)	intron (NM_145160, intron 17 of 21)	-79059	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
146899	chr20	51536251	51537430	+	0	NA	intron (NM_001258292, intron 1 of 9)	intron (NM_001258292, intron 1 of 9)	5879	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
94959	chr17	32129271	32129430	+	0	NA	Intergenic	LTR34|LTR|ERV1	-13104	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
66829	chr14	64765871	64766230	+	0	NA	TTS (NM_001355437)	TTS (NM_001355437)	19636	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
127529	chr2	42316851	42317830	+	0	NA	intron (NM_019063, intron 18 of 22)	intron (NM_019063, intron 18 of 22)	42698	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
206215	chr7	28560851	28560950	+	0	NA	intron (NM_182899, intron 3 of 9)	(GTGT)n|Simple_repeat|Simple_repeat	-125233	NM_001011666	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
56984	chr12	120555101	120555300	+	0	NA	intron (NM_001330474, intron 4 of 16)	AluSx1|SINE|Alu	20844	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
47873	chr12	6683901	6684100	+	0	NA	intron (NM_001039920, intron 2 of 8)	AluSg|SINE|Alu	5375	NM_133476	171017		NM_133476	ENSG00000126746	ZNF384	CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1	zinc finger protein 384	protein-coding
107068	chr18	33232101	33232300	+	0	NA	intron (NM_001371121, intron 15 of 23)	intron (NM_001371121, intron 15 of 23)	208371	NM_001371121	374864		NM_198995	ENSG00000166960	CCDC178	C18orf34	coiled-coil domain containing 178	protein-coding
117894	chr19	32701071	32701230	+	0	NA	intron (NM_001105570, intron 1 of 2)	L1MEc|LINE|L1	9189	NM_001105570	390916		NM_001105570	ENSG00000213965	NUDT19	RP2	nudix hydrolase 19	protein-coding
157814	chr22	46969801	46970200	+	0	NA	intron (NR_104292, intron 10 of 13)	intron (NR_104292, intron 10 of 13)	-53958	NR_122047	642757		NR_122047	ENSG00000280080	TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
133275	chr2	113507771	113508530	+	0	NA	Intergenic	Intergenic	9066	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
158380	chr22	50486801	50487500	+	0	NA	TTS (NM_001253845)	TTS (NM_001253845)	291	NM_017584	55586		NM_017584	ENSG00000100253	MIOX	ALDRL6	myo-inositol oxygenase	protein-coding
110088	chr19	1521371	1522200	+	0	NA	Intergenic	Intergenic	-2292	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
216803	chr8	22554951	22556480	+	0	NA	intron (NM_005775, intron 3 of 20)	AluSq|SINE|Alu	3788	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
182081	chr5	55988651	55989180	+	0	NA	intron (NR_157112, intron 1 of 17)	AluJo|SINE|Alu	6048	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
89652	chr16	89349871	89351380	+	0	NA	intron (NR_045839, intron 2 of 9)	L1ME1|LINE|L1	30173	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
169476	chr3	169660821	169661680	+	0	NA	intron (NM_004991, intron 1 of 16)	intron (NM_004991, intron 1 of 16)	2462	NM_001205194	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
83023	chr16	22300371	22301180	+	0	NA	intron (NM_001258035, intron 1 of 19).2	intron (NM_001258035, intron 1 of 19).2	3366	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
15412	chr1	150246121	150246780	+	0	NA	Intergenic	AluSp|SINE|Alu	-10338	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
173095	chr4	6307051	6307350	+	0	NA	Intergenic	MIR|SINE|MIR	37350	NM_006005	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
141311	chr2	240450351	240450800	+	0	NA	intron (NR_161169, intron 2 of 2)	intron (NR_161169, intron 2 of 2)	-5426	NR_029702	406941		NR_029702	ENSG00000207611	MIR149	MIRN149|mir-149	microRNA 149	ncRNA
53463	chr12	65826171	65826330	+	0	NA	intron (NM_003483, intron 1 of 4)	CpG	724	NR_026825	204010		NR_026825	ENSG00000293176	RPSAP52	RPSA_17_1251	ribosomal protein SA pseudogene 52	pseudo
16281	chr1	154153801	154154000	+	0	NA	intron (NM_207308, intron 1 of 39)	intron (NM_207308, intron 1 of 39)	1216	NM_207308	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
142364	chr20	3780121	3780450	+	0	NA	intron (NM_015417, intron 1 of 6)	AluSx|SINE|Alu	1163	NM_015417	25876		NM_015417	ENSG00000101222	SPEF1	C20orf28|CLAMP|SPEF1A	sperm flagellar 1	protein-coding
162918	chr3	49417721	49418380	+	0	NA	intron (NM_001164710, intron 6 of 7)	intron (NM_001164710, intron 6 of 7)	4423	NM_001164710	275		NM_000481	ENSG00000145020	AMT	GCE|GCE2|GCST|GCVT|NKH	aminomethyltransferase	protein-coding
3804	chr1	16729701	16730080	+	0	NA	Intergenic	AluSz6|SINE|Alu	-9733	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
40775	chr11	64871301	64872150	+	0	NA	intron (NM_001282444, intron 4 of 6)	intron (NM_001282444, intron 4 of 6)	6884	NR_162101	113218486		NR_162101		MIR10392	-	microRNA 10392	ncRNA
33268	chr10	114519051	114519550	+	0	NA	intron (NM_001322883, intron 6 of 20)	MIR3|SINE|MIR	7613	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
90059	chr16	89945721	89946130	+	0	NA	Intergenic	AluJb|SINE|Alu	-2806	NM_001242821	54849		NM_017702	ENSG00000140995	DEF8	-	differentially expressed in FDCP 8 homolog	protein-coding
92691	chr17	13600551	13601080	+	0	NA	exon (NM_006042, exon 1 of 2)	exon (NM_006042, exon 1 of 2)	1114	NM_006042	9955		NM_006042	ENSG00000153976	HS3ST3A1	3-OST-3A|3OST3A1	heparan sulfate-glucosamine 3-sulfotransferase 3A1	protein-coding
42909	chr11	73384821	73385730	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	8607	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
68842	chr14	91288201	91288530	+	0	NA	intron (NM_001080414, intron 25 of 29)	intron (NM_001080414, intron 25 of 29)	-34485	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
40614	chr11	64684421	64684680	+	0	NA	intron (NM_015080, intron 6 of 22)	intron (NM_015080, intron 6 of 22)	38647	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
143602	chr20	31710421	31710680	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-10957	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
232168	chr9	134166501	134166900	+	0	NA	Intergenic	Intergenic	-2136	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
188064	chr5	150054071	150054230	+	0	NA	exon (NM_001349736, exon 23 of 23)	exon (NM_001349736, exon 23 of 23)	32404	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
39815	chr11	62025101	62026750	+	0	NA	Intergenic	Intergenic	-58291	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
194579	chr6	33423501	33424080	+	0	NA	intron (NM_006772, intron 2 of 18).2	intron (NM_006772, intron 2 of 18).2	3725	NM_006772	8831		NM_006772	ENSG00000197283	SYNGAP1	MRD5|RASA1|RASA5|SYNGAP	synaptic Ras GTPase activating protein 1	protein-coding
159924	chr3	17003521	17003780	+	0	NA	intron (NM_015184, intron 1 of 5)	L1MCc|LINE|L1	70454	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
108430	chr18	69956701	69958030	+	0	NA	promoter-TSS (NM_001303619)	promoter-TSS (NM_001303619)	-566	NM_006566	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
7108	chr1	32127621	32128280	+	0	NA	intron (NM_012316, intron 1 of 13)	intron (NM_012316, intron 1 of 13)	19894	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
158234	chr22	50282551	50283050	+	0	NA	exon (NM_001376884, exon 17 of 36)	exon (NM_001376884, exon 17 of 36)	-12420	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
182200	chr5	56828101	56828380	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	12691	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
8325	chr1	40164221	40164950	+	0	NA	intron (NM_012421, intron 1 of 7)	intron (NM_012421, intron 1 of 7)	3198	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
233451	chr9	137630371	137630730	+	0	NA	intron (NM_001354612, intron 1 of 8)	intron (NM_001354612, intron 1 of 8)	11545	NM_001145527	79813		NM_024757	ENSG00000181090	EHMT1	EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D	euchromatic histone lysine methyltransferase 1	protein-coding
10376	chr1	64961521	64961900	+	0	NA	intron (NM_001321853, intron 2 of 26)	L2c|LINE|L2	4839	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
48598	chr12	10319451	10319950	+	0	NA	non-coding (NR_147040, exon 5 of 5)	non-coding (NR_147040, exon 5 of 5)	11830	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
120892	chr19	45587301	45588350	+	0	NA	Intergenic	Intergenic	-3023	NM_001017989	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
143952	chr20	32818551	32818650	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1354	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
62119	chr13	95552471	95553080	+	0	NA	promoter-TSS (NM_006984)	promoter-TSS (NM_006984)	55	NM_006984	9071		NM_006984	ENSG00000134873	CLDN10	CPETRL3|HELIX|OSP-L|OSPL	claudin 10	protein-coding
174629	chr4	40311351	40311450	+	0	NA	intron (NR_121641, intron 2 of 3)	AluSc8|SINE|Alu	4215	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
6750	chr1	30727401	30727880	+	0	NA	TTS (NR_034182)	TTS (NR_034182)	-4055	NM_002379	4146		NM_002379	ENSG00000162510	MATN1	CMP|CRTM	matrilin 1	protein-coding
81110	chr16	4371101	4373400	+	0	NA	intron (NM_138440, intron 1 of 1)	intron (NM_138440, intron 1 of 1)	402	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
159042	chr3	11300851	11301350	+	0	NA	intron (NM_001349235, intron 4 of 19)	intron (NM_001349235, intron 4 of 19)	28703	NM_001144912	10533		NM_006395	ENSG00000197548	ATG7	APG7-LIKE|APG7L|GSA7|SCAR31	autophagy related 7	protein-coding
95030	chr17	32486171	32488550	+	0	NA	intron (NM_003885, intron 1 of 1)	CpG	367	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
138483	chr2	207088401	207088600	+	0	NA	exon (NM_001270942, exon 4 of 5)	exon (NM_001270942, exon 4 of 5)	21573	NR_036227	100423036		NR_036227	ENSG00000253008	MIR2355	mir-2355	microRNA 2355	ncRNA
201484	chr6	148870021	148870280	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	94534	NR_038408	100128176		NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA
190820	chr6	1456571	1456760	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-66254	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
20265	chr1	194052271	194052880	+	0	NA	Intergenic	L1M3|LINE|L1	747830	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
221575	chr8	125218521	125218780	+	0	NA	intron (NR_146191, intron 6 of 8)	AluSx1|SINE|Alu	126790	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
135408	chr2	160994171	160994830	+	0	NA	Intergenic	Intergenic	-142455	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
87378	chr16	70437551	70438050	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	1300	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
132690	chr2	108960001	108960200	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	29120	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
2923	chr1	11731501	11732300	+	0	NA	Intergenic	Intergenic	-4185	NM_001040194	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
232196	chr9	134321471	134321930	+	0	NA	Intergenic	Intergenic	-4755	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
93636	chr17	19173421	19173930	+	0	NA	Intergenic	Intergenic	-11051	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
52298	chr12	54680371	54680650	+	0	NA	Intergenic	Intergenic	-32145	NM_001300854	117159		NM_053283	ENSG00000161634	DCD	AIDD|DCD-1|DSEP|HCAP|PIF	dermcidin	protein-coding
218290	chr8	42355401	42356250	+	0	NA	intron (NM_002690, intron 7 of 13)	intron (NM_002690, intron 7 of 13)	17331	NM_002690	5423		NM_002690	ENSG00000070501	POLB	-	DNA polymerase beta	protein-coding
181367	chr5	40585621	40585880	+	0	NA	Intergenic	MIR|SINE|MIR	-94165	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
159199	chr3	12875621	12876780	+	0	NA	Intergenic	CpG	9011	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
208414	chr7	66744521	66745030	+	0	NA	intron (NM_001367749, intron 1 of 4)	intron (NM_001367749, intron 1 of 4)	4042	NM_001367735	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
119119	chr19	39347171	39347530	+	0	NA	intron (NM_001303614, intron 1 of 12)	intron (NM_001303614, intron 1 of 12)	4929	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
28942	chr10	63213471	63214180	+	0	NA	exon (NM_001318154, exon 8 of 26)	exon (NM_001318154, exon 8 of 26)	55398	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
45084	chr11	117078121	117078700	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	20018	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
131413	chr2	96282571	96282730	+	0	NA	intron (NM_014014, intron 34 of 44)	MSTA|LTR|ERVL-MaLR	16425	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
106385	chr18	13372101	13372900	+	0	NA	intron (NM_001378098, intron 1 of 5)	intron (NM_001378098, intron 1 of 5)	33897	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
20290	chr1	197138601	197139450	+	0	NA	intron (NM_018136, intron 4 of 27)	intron (NM_018136, intron 4 of 27)	7644	NM_018136	259266		NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	assembly factor for spindle microtubules	protein-coding
202808	chr6	159646851	159646950	+	0	NA	Intergenic	L2c|LINE|L2	46341	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
227544	chr9	91794621	91795080	+	0	NA	intron (NM_001318204, intron 1 of 7)	AluSx1|SINE|Alu	155378	NM_004560	4920		NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
215422	chr7	157626051	157627280	+	0	NA	intron (NM_130842, intron 13 of 21)	L2c|LINE|L2	-52243	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
50335	chr12	47080601	47081580	+	0	NA	intron (NM_138371, intron 1 of 3)	intron (NM_138371, intron 1 of 3)	-1131	NM_001370299	347902		NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
31831	chr10	99540571	99541100	+	0	NA	Intergenic	CpG	7893	NM_145285	159296		NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
35839	chr11	2305121	2306730	+	0	NA	intron (NM_139022, intron 3 of 9)	intron (NM_139022, intron 3 of 9)	-2785	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
221462	chr8	124449601	124452250	+	0	NA	5' UTR (NM_017956, exon 1 of 1)	5' UTR (NM_017956, exon 1 of 1)	105	NM_017956	55039		NM_017956	ENSG00000183665	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog	protein-coding
205705	chr7	23321221	23321480	+	0	NA	intron (NM_006547, intron 10 of 14)	L1PA3|LINE|L1	22011	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
199053	chr6	111486701	111487190	+	0	NA	intron (NR_034111, intron 3 of 3)	intron (NR_034111, intron 3 of 3)	-3230	NM_001286432	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
145973	chr20	46342101	46342300	+	0	NA	Intergenic	Intergenic	22225	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
87667	chr16	74597971	74598130	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	9064	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
32493	chr10	102709901	102710100	+	0	NA	intron (NM_004311, intron 1 of 5)	AluSx1|SINE|Alu	4397	NM_004311	403		NM_004311	ENSG00000138175	ARL3	ARFL3|JBTS35|RP83	ADP ribosylation factor like GTPase 3	protein-coding
73559	chr15	44292271	44292430	+	0	NA	intron (NM_177974, intron 1 of 8)	AluY|SINE|Alu	3631	NM_177974	113201		NM_138423	ENSG00000166734	GOLM2	CASC4|H63	golgi membrane protein 2	protein-coding
132946	chr2	111456001	111456200	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	39061	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
51866	chr12	53484801	53485700	+	0	NA	intron (NM_006301, intron 6 of 14)	intron (NM_006301, intron 6 of 14)	14208	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
164244	chr3	57130601	57130880	+	0	NA	intron (NM_001318864, intron 2 of 13)	intron (NM_001318864, intron 2 of 13)	34613	NM_017563	54756		NM_017563	ENSG00000144730	IL17RD	HH18|IL-17RD|IL17RLM|SEF	interleukin 17 receptor D	protein-coding
107096	chr18	35047951	35048550	+	0	NA	intron (NR_046177, intron 1 of 6)	MSTA|LTR|ERVL-MaLR	6837	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
646	chr1	1347321	1347780	+	0	NA	intron (NM_004421, intron 1 of 14)	intron (NM_004421, intron 1 of 14)	1868	NM_004421	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
23632	chr1	230291701	230292200	+	0	NA	Intergenic	Intergenic	134382	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
210542	chr7	100269671	100270080	+	0	NA	intron (NR_166147, intron 1 of 4)	intron (NR_166147, intron 1 of 4)	2330	NR_028038	352954		NM_178831	ENSG00000291122	CASTOR3P	CASTOR3|GATS|STAG3OS	CASTOR family member 3, pseudogene	pseudo
61207	chr13	49454421	49455180	+	0	NA	intron (NR_135324, intron 2 of 20)	intron (NR_135324, intron 2 of 20)	10526	NM_001160308	83852		NM_031915	ENSG00000136169	SETDB2	C13orf4|CLLD8|CLLL8|KMT1F	SET domain bifurcated histone lysine methyltransferase 2	protein-coding
31138	chr10	89644801	89645930	+	0	NA	5' UTR (NM_148977, exon 1 of 7)	5' UTR (NM_148977, exon 1 of 7)	207	NM_148977	53354		NM_138316	ENSG00000152782	PANK1	PANK	pantothenate kinase 1	protein-coding
71003	chr14	104730451	104730880	+	0	NA	intron (NM_199165, intron 1 of 12)	intron (NM_199165, intron 1 of 12)	821	NM_001320424	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
198125	chr6	90406221	90406930	+	0	NA	Intergenic	Intergenic	93833	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
195362	chr6	36677171	36677330	+	0	NA	TTS (NR_144384)	TTS (NR_144384)	787	NM_001291549	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
72035	chr15	28410151	28410250	+	0	NA	intron (NR_031672, intron 2 of 2)	intron (NR_031672, intron 2 of 2)	-16291	NR_039733	100616228		NR_039733	ENSG00000266039	MIR4509-2	-	microRNA 4509-2	ncRNA
26929	chr10	26480671	26480830	+	0	NA	intron (NM_019043, intron 2 of 14)	AluJb|SINE|Alu	42409	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
128873	chr2	64049321	64050080	+	0	NA	Intergenic	Intergenic	-30272	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
105137	chr17	82235901	82236890	+	0	NA	promoter-TSS (NR_106845)	promoter-TSS (NR_106845)	-273	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
235139	chrX	41090651	41091050	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	5405	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
144186	chr20	34190771	34190930	+	0	NA	Intergenic	Intergenic	-3712	NM_001385218	434		NM_001672	ENSG00000101440	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
98946	chr17	48636301	48637200	+	0	NA	Intergenic	CpG	-4191	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
129756	chr2	70999751	71000050	+	0	NA	Intergenic	AluJo|SINE|Alu	-5027	NM_144582	113419		NM_144582	ENSG00000144043	TEX261	TEG-261	testis expressed 261	protein-coding
156435	chr22	41234501	41234700	+	0	NA	intron (NM_138481, intron 5 of 5)	AluY|SINE|Alu	6331	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
5936	chr1	26877751	26878700	+	0	NA	3' UTR (NM_018066, exon 5 of 5)	3' UTR (NM_018066, exon 5 of 5)	12058	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
212466	chr7	128475251	128475350	+	0	NA	Intergenic	Intergenic	-1448	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
120725	chr19	45340371	45341700	+	0	NA	intron (NM_177417, intron 1 of 12)	CpG	285	NM_177417	147700		NM_145275	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
157081	chr22	42612521	42613130	+	0	NA	intron (NM_001278657, intron 1 of 8)	AluSx1|SINE|Alu	2058	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
102238	chr17	75249271	75249430	+	0	NA	intron (NM_001291641, intron 1 of 17)	intron (NM_001291641, intron 1 of 17)	12256	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
151163	chr21	44937451	44937850	+	0	NA	non-coding (NR_027129, exon 2 of 4)	non-coding (NR_027129, exon 2 of 4)	-2047	NM_001316988	85395		NM_058190	ENSG00000160256	SLX9	C21orf70|FAM207A|PRED56	SLX9 ribosome biogenesis factor	protein-coding
181605	chr5	43554851	43555150	+	0	NA	intron (NM_183323, intron 2 of 10)	L1ME3A|LINE|L1	2077	NM_006451	10605		NM_006451	ENSG00000172239	PAIP1	-	poly(A) binding protein interacting protein 1	protein-coding
29694	chr10	72056071	72056530	+	0	NA	Intergenic	MIRb|SINE|MIR	32251	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
188408	chr5	154058671	154059380	+	0	NA	Intergenic	LTR16C|LTR|ERVL	20058	NM_005927	4238		NM_005927	ENSG00000037749	MFAP3	-	microfibril associated protein 3	protein-coding
23415	chr1	228287821	228288080	+	0	NA	exon (NM_001098623, exon 36 of 105)	exon (NM_001098623, exon 36 of 105)	-74286	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
184085	chr5	93595771	93596230	+	0	NA	Intergenic	Intergenic	12778	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
194546	chr6	33321421	33322400	+	0	NA	exon (NM_001350, exon 2 of 8)	exon (NM_001350, exon 2 of 8)	1049	NM_001350	1616		NM_001350	ENSG00000204209	DAXX	BING2|DAP6|EAP1|SMIM40	death domain associated protein	protein-coding
162692	chr3	48948851	48949280	+	0	NA	intron (NM_001349227, intron 3 of 16)	L1ME1|LINE|L1	-29680	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
177922	chr4	131729951	131730150	+	0	NA	Intergenic	SST1|Satellite|centr	-34788	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
182814	chr5	69095451	69095550	+	0	NA	intron (NM_001251969, intron 1 of 2)	intron (NM_001251969, intron 1 of 2)	1486	NM_001251969	64924		NM_022902	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 member 5	protein-coding
185483	chr5	131297321	131297900	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluY|SINE|Alu	33557	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
97174	chr17	42668121	42668730	+	0	NA	intron (NM_024927, intron 12 of 12)	L2a|LINE|L2	7586	NR_073574	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
104190	chr17	80443151	80443450	+	0	NA	Intergenic	Intergenic	23882	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
12061	chr1	98406901	98407100	+	0	NA	Intergenic	Intergenic	196289	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
41532	chr11	66279671	66280080	+	0	NA	intron (NM_182553, intron 1 of 5)	(TGGCTC)n|Simple_repeat|Simple_repeat	1700	NR_073079	254263		NM_182553	ENSG00000174871	CNIH2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding
204696	chr7	5512121	5515250	+	0	NA	promoter-TSS (NR_126168)	promoter-TSS (NR_126168)	124	NM_001363441	80028		NM_024963	ENSG00000155034	FBXL18	Fbl18	F-box and leucine rich repeat protein 18	protein-coding
42136	chr11	67639751	67640550	+	0	NA	promoter-TSS (NM_005995)	promoter-TSS (NM_005995)	-590	NM_005995	347853		NM_005995	ENSG00000167800	TBX10	TBX13|TBX7	T-box transcription factor 10	protein-coding
192326	chr6	22045351	22045650	+	0	NA	intron (NR_015410, intron 7 of 11)	intron (NR_015410, intron 7 of 11)	101693	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
140252	chr2	232138721	232139400	+	0	NA	intron (NM_001257281, intron 8 of 13)	intron (NM_001257281, intron 8 of 13)	-33593	NR_030288	693147		NR_030288	ENSG00000207626	MIR562	MIRN562|hsa-mir-562	microRNA 562	ncRNA
113527	chr19	10123321	10123950	+	0	NA	Intergenic	AluY|SINE|Alu	-3736	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
148506	chr20	64081471	64081830	+	0	NA	intron (NM_000913, intron 1 of 3)	MIR3|SINE|MIR	1568	NM_182647	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
181955	chr5	55037051	55038230	+	0	NA	Intergenic	Intergenic	13384	NM_002104	3003		NM_002104	ENSG00000113088	GZMK	TRYP2	granzyme K	protein-coding
222643	chr8	141132851	141133900	+	0	NA	intron (NM_014957, intron 1 of 22)	intron (NM_014957, intron 1 of 22)	4786	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
147080	chr20	53830021	53830580	+	0	NA	Intergenic	Intergenic	45409	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
16806	chr1	155562071	155564650	+	0	NA	promoter-TSS (NM_001366177)	promoter-TSS (NM_001366177)	-557	NM_001366177	55870		NM_018489	ENSG00000116539	ASH1L	ASH1|ASH1L1|KMT2H|MRD52	ASH1 like histone lysine methyltransferase	protein-coding
236500	chrX	71778351	71778950	+	0	NA	non-coding (NR_034004, exon 3 of 3).2	non-coding (NR_034004, exon 3 of 3).2	5728	NR_034004	100132741		NR_034004		LOC100132741	-	uncharacterized LOC100132741	ncRNA
36047	chr11	2933071	2933930	+	0	NA	Intergenic	Intergenic	-4080	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
206493	chr7	33077501	33077880	+	0	NA	Intergenic	ERV24B_Prim-int|LTR|ERV1	-14914	NM_001374339	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
169449	chr3	167684421	167685080	+	0	NA	intron (NM_007217, intron 8 of 8)	intron (NM_007217, intron 8 of 8)	-26827	NM_001348951	151790		NM_178824	ENSG00000174776	WDR49	-	WD repeat domain 49	protein-coding
53070	chr12	57723271	57723880	+	0	NA	TTS (NM_001122772)	TTS (NM_001122772)	-2665	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
179812	chr5	442571	444130	+	0	NA	promoter-TSS (NR_126522)	promoter-TSS (NR_126522)	174	NM_007277	11336		NM_007277	ENSG00000180104	EXOC3	SEC6|SEC6L1|Sec6p	exocyst complex component 3	protein-coding
66560	chr14	63045051	63045150	+	0	NA	intron (NM_172375, intron 1 of 9)	intron (NM_172375, intron 1 of 9)	358	NM_139318	27133		NM_139318	ENSG00000140015	KCNH5	DEE112|EAG2|H-EAG2|Kv10.2|hEAG2	potassium voltage-gated channel subfamily H member 5	protein-coding
78859	chr15	100338621	100339650	+	0	NA	intron (NM_139057, intron 2 of 21)	intron (NM_139057, intron 2 of 21)	2840	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
111738	chr19	4358171	4358550	+	0	NA	intron (NM_001159846, intron 9 of 10)	intron (NM_001159846, intron 9 of 10)	14798	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
204940	chr7	6270921	6271490	+	0	NA	intron (NM_004227, intron 1 of 12)	intron (NM_004227, intron 1 of 12)	1419	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
153421	chr22	25002321	25002580	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-25524	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
157200	chr22	43136171	43136530	+	0	NA	intron (NR_046423, intron 2 of 2)	intron (NR_046423, intron 2 of 2)	7047	NM_014507	27349		NM_014507	ENSG00000100294	MCAT	FASN2C|MCT|MCT1|MT|NET62|OPA15|fabD	malonyl-CoA-acyl carrier protein transacylase	protein-coding
107404	chr18	46105601	46106630	+	0	NA	intron (NR_026978, intron 2 of 8)	intron (NR_026978, intron 2 of 8)	1730	NM_138443	115106		NM_138443	ENSG00000152240	HAUS1	CCDC5|HEI-C|HEIC|HsT1461	HAUS augmin like complex subunit 1	protein-coding
126259	chr2	27117671	27118030	+	0	NA	intron (NM_001301324, intron 1 of 5)	AluY|SINE|Alu	1277	NM_001301324	10669		NM_006569	ENSG00000138028	CGREF1	CGR11	cell growth regulator with EF-hand domain 1	protein-coding
210797	chr7	100854471	100855000	+	0	NA	exon (NM_001363493, exon 3 of 14)	exon (NM_001363493, exon 3 of 14)	2016	NM_001267812	56996		NM_020246	ENSG00000146828	SLC12A9	CCC6|CIP1|WO3.3|hCCC6	solute carrier family 12 member 9	protein-coding
181861	chr5	53482021	53483100	+	0	NA	intron (NM_006350, intron 1 of 5)	intron (NM_006350, intron 1 of 5)	1931	NM_006350	10468		NM_006350	ENSG00000134363	FST	FS	follistatin	protein-coding
130975	chr2	87575421	87575880	+	0	NA	Intergenic	Intergenic	-54105	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
19619	chr1	179952871	179953050	+	0	NA	Intergenic	Intergenic	-1850	NM_014810	9857		NM_014810	ENSG00000135837	CEP350	CAP350|GM133	centrosomal protein 350	protein-coding
222744	chr8	141409351	141409650	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-11888	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
147201	chr20	57350701	57351700	+	0	NA	promoter-TSS (NM_001015885)	promoter-TSS (NM_001015885)	-55	NM_003610	8480		NM_003610	ENSG00000101146	RAE1	Gle2|MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1	ribonucleic acid export 1	protein-coding
143420	chr20	29742901	29743480	+	0	NA	Intergenic	CpG	-137194	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
223595	chr8	144302471	144302830	+	0	NA	intron (NM_005526, intron 1 of 12)	AluJo|SINE|Alu	11046	NM_005526	3297		NM_005526	ENSG00000185122	HSF1	HSTF1	heat shock transcription factor 1	protein-coding
238395	chrX	150454701	150454900	+	0	NA	intron (NM_001177466, intron 1 of 5)	(CCACCA)n|Simple_repeat|Simple_repeat	9346	NM_001177466	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
81451	chr16	8882251	8882730	+	0	NA	Intergenic	Intergenic	-13478	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
170621	chr3	187015921	187017000	+	0	NA	intron (NM_173216, intron 2 of 7)	intron (NM_173216, intron 2 of 7)	-5395	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
85459	chr16	50666811	50667900	+	0	NA	3' UTR (NM_153337, exon 4 of 4)	3' UTR (NM_153337, exon 4 of 4)	-1500	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
66595	chr14	63540851	63540950	+	0	NA	intron (NR_104104, intron 1 of 12)	intron (NR_104104, intron 1 of 12)	-1884	NR_158218	112268140		NR_158218		LOC112268140	-	loricrin-like	ncRNA
91797	chr17	7026551	7026950	+	0	NA	exon (NM_181844, exon 7 of 9)	exon (NM_181844, exon 7 of 9)	3700	NM_181844	255877		NM_181844	ENSG00000161940	BCL6B	BAZF|ZBTB28|ZNF62	BCL6B transcription repressor	protein-coding
55676	chr12	107402371	107402730	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	81962	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
89725	chr16	89424251	89424550	+	0	NA	intron (NR_045839, intron 1 of 9)	AluSp|SINE|Alu	-6518	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
167647	chr3	129618001	129618200	+	0	NA	Intergenic	Intergenic	-11424	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
109252	chr19	520971	521950	+	0	NA	Intergenic	MER21A|LTR|ERVL	-10300	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
54649	chr12	92987451	92987980	+	0	NA	Intergenic	Intergenic	-58420	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
83393	chr16	27138401	27139700	+	0	NA	Intergenic	(GTG)n|Simple_repeat|Simple_repeat	-64476	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
47001	chr12	163151	163330	+	0	NA	intron (NM_015232, intron 7 of 12).2	intron (NM_015232, intron 7 of 12).2	-14071	NR_033859	574538		NR_033859	ENSG00000249695	LOC574538	-	uncharacterized LOC574538	ncRNA
119060	chr19	39124571	39124730	+	0	NA	Intergenic	L2a|LINE|L2	-1136	NM_001014831	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
209561	chr7	77348671	77349030	+	0	NA	intron (NM_001350897, intron 18 of 29)	intron (NM_001350897, intron 18 of 29)	-66348	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
18424	chr1	161457351	161457730	+	0	NA	Intergenic	CpG	-47917	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
88479	chr16	85086151	85087100	+	0	NA	intron (NM_014732, intron 10 of 12)	intron (NM_014732, intron 10 of 12)	23413	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
235267	chrX	41781471	41781780	+	0	NA	intron (NM_001126055, intron 3 of 24)	intron (NM_001126055, intron 3 of 24)	57444	NM_080817	27197		NM_080817	ENSG00000171657	GPR82	-	G protein-coupled receptor 82	protein-coding
105269	chr17	82450201	82451730	+	0	NA	promoter-TSS (NM_001193657)	promoter-TSS (NM_001193657)	-213	NR_036517	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
32075	chr10	101101771	101102130	+	0	NA	intron (NR_130723, intron 2 of 2)	intron (NR_130723, intron 2 of 2)	29196	NR_130723	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
62317	chr13	99047401	99047800	+	0	NA	intron (NM_001318849, intron 1 of 54)	AluSx|SINE|Alu	-31815	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
190571	chr5	180830071	180832000	+	0	NA	promoter-TSS (NR_027183)	promoter-TSS (NR_027183)	78	NR_045678	729678		NR_027183	ENSG00000245060	LINC00847	-	long intergenic non-protein coding RNA 847	ncRNA
40255	chr11	63683921	63684750	+	0	NA	intron (NR_049750, intron 1 of 5)	AluY|SINE|Alu	2835	NM_201430	10313		NM_006054	ENSG00000133318	RTN3	ASYIP|HAP|NSPL2|NSPLII|RTN3-A1	reticulon 3	protein-coding
71178	chr14	105047851	105047950	+	0	NA	Intergenic	Intergenic	17530	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
58656	chr12	132525021	132525280	+	0	NA	intron (NM_001382740, intron 2 of 11)	MIR|SINE|MIR	19744	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
27018	chr10	26842871	26843030	+	0	NA	intron (NM_001178116, intron 1 of 11)	AluSc|SINE|Alu	18008	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
116233	chr19	17538101	17538300	+	0	NA	intron (NM_001363609, intron 5 of 13)	AluY|SINE|Alu	10931	NM_001321828	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
132979	chr2	111491121	111491730	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	3736	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
202977	chr6	161272921	161274880	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	161	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
8377	chr1	40374201	40375130	+	0	NA	promoter-TSS (NM_001198978)	promoter-TSS (NM_001198978)	32	NM_001198978	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
80430	chr16	2637971	2638330	+	0	NA	promoter-TSS (NR_024492)	promoter-TSS (NR_024492)	-832	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
8949	chr1	44239151	44239250	+	0	NA	intron (NR_110056, intron 2 of 3)	intron (NR_110056, intron 2 of 3)	5083	NR_046817	100874278		NR_046817	ENSG00000233602	ERI3-IT1	-	ERI3 intronic transcript 1	ncRNA
38192	chr11	36377001	36378600	+	0	NA	intron (NM_024841, intron 2 of 9)	CpG-4158	1815	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
74846	chr15	63515501	63515980	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	11147	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
44547	chr11	108119001	108119200	+	0	NA	Intergenic	MIR|SINE|MIR	-2467	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
77310	chr15	82367871	82368230	+	0	NA	intron (NR_004847, intron 1 of 4)	L1MB8|LINE|L1	12914	NR_004847	100134869		NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	UBE2Q2 pseudogene 2	pseudo
75879	chr15	69725871	69726230	+	0	NA	Intergenic	Intergenic	-109184	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
89917	chr16	89710701	89712650	+	0	NA	promoter-TSS (NR_036480)	promoter-TSS (NR_036480)	-181	NR_036480	100128881		NR_036480	ENSG00000261373	VPS9D1-AS1	MYU	VPS9D1 antisense RNA 1	ncRNA
71871	chr15	22377601	22378090	+	0	NA	Intergenic	Intergenic	60181	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
50213	chr12	46214451	46215660	+	0	NA	intron (NM_001278387, intron 6 of 17)	MER5A1|DNA|hAT-Charlie	51461	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
107172	chr18	35497121	35498400	+	0	NA	promoter-TSS (NM_001308064)	promoter-TSS (NM_001308064)	-152	NM_001308064	125476		NM_194281	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
148887	chr21	8456961	8457900	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	16284	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
122729	chr19	50024751	50026900	+	0	NA	promoter-TSS (NM_001006656)	promoter-TSS (NM_001006656)	-180	NM_001308424	25888		NM_015428	ENSG00000142528	ZNF473	ZFP100|ZN473	zinc finger protein 473	protein-coding
15635	chr1	150675701	150675900	+	0	NA	intron (NM_018178, intron 2 of 4)	AluSx3|SINE|Alu	21354	NM_018178	55204		NM_018178	ENSG00000143457	GOLPH3L	GPP34R	golgi phosphoprotein 3 like	protein-coding
171075	chr3	195453221	195453880	+	0	NA	Intergenic	L2a|LINE|L2	-10530	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
212498	chr7	128651201	128652180	+	0	NA	non-coding (NR_024368, exon 5 of 5)	non-coding (NR_024368, exon 5 of 5)	10449	NR_024368	402483		NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
189097	chr5	170301501	170301730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3838	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
30418	chr10	78977951	78978250	+	0	NA	intron (NR_015429, intron 3 of 7)	L2c|LINE|L2	89348	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
43191	chr11	75409621	75410180	+	0	NA	intron (NM_001256802, intron 6 of 6)	SVA_E|Retroposon|SVA	5479	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
70228	chr14	100654551	100655080	+	0	NA	Intergenic	CpG	-2453	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
34709	chr10	133480571	133480730	+	0	NA	Intergenic	Intergenic	26722	NR_149718	619207		NM_001033584	ENSG00000214279	SCART1	-	scavenger receptor family member expressed on T cells 1	protein-coding
215950	chr8	8352371	8352530	+	0	NA	intron (NM_001369759, intron 3 of 5)	intron (NM_001369759, intron 3 of 5)	33794	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
131295	chr2	96107201	96107580	+	0	NA	Intergenic	Intergenic	9181	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
63542	chr14	19345971	19346330	+	0	NA	intron (NR_164166, intron 3 of 3)	intron (NR_164166, intron 3 of 3)	-8476	NR_110526	503639		NM_001013701		DUXAP10	LNMAT1	double homeobox A pseudogene 10	pseudo
204668	chr7	5478171	5478930	+	0	NA	3' UTR (NM_001367781, exon 5 of 5)	3' UTR (NM_001367781, exon 5 of 5)	17367	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
177044	chr4	107824651	107825330	+	0	NA	promoter-TSS (NM_001375907)	promoter-TSS (NM_001375907)	58	NM_001375905	166929		NM_152621	ENSG00000164023	SGMS2	CDL|SMS2	sphingomyelin synthase 2	protein-coding
125987	chr2	25292251	25292550	+	0	NA	intron (NR_135490, intron 3 of 23)	intron (NR_135490, intron 3 of 23)	36321	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
135064	chr2	156435641	156437180	+	0	NA	promoter-TSS (NM_000408)	promoter-TSS (NM_000408)	31	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
141817	chr20	347501	348680	+	0	NA	intron (NM_001323685, intron 1 of 3)	CpG	185	NM_001323685	80023		NM_024958	ENSG00000125841	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
215600	chr7	159013351	159013650	+	0	NA	intron (NR_024394, intron 1 of 4)	G-rich|Low_complexity|Low_complexity	5146	NR_024394	154822		NM_198345	ENSG00000231419	LINC00689	STORM	long intergenic non-protein coding RNA 689	ncRNA
49210	chr12	15900271	15900430	+	0	NA	intron (NM_007178, intron 8 of 9)	AluSg|SINE|Alu	-10982	NM_001300779	51071		NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
113370	chr19	8753071	8753430	+	0	NA	Intergenic	Intergenic	22296	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
63054	chr13	113111671	113112080	+	0	NA	intron (NR_051961, intron 2 of 6)	(CACCTCA)n|Simple_repeat|Simple_repeat	6084	NM_019616	2155		NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
232072	chr9	133480651	133480950	+	0	NA	Intergenic	AluJr|SINE|Alu	-1701	NM_001145099	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
115106	chr19	14334221	14335700	+	0	NA	intron (NR_134916, intron 1 of 1)	MER112|DNA|hAT-Charlie	1217	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
113845	chr19	10635701	10635900	+	0	NA	intron (NM_001363611, intron 14 of 22)	AluSc5|SINE|Alu	10247	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
43898	chr11	88508671	88509450	+	0	NA	exon (NM_000842, exon 9 of 9)	exon (NM_000842, exon 9 of 9)	4484	NR_049724	100873989		NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
175870	chr4	80009421	80010080	+	0	NA	intron (NM_001145794, intron 11 of 15)	AluSg|SINE|Alu	63479	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
68864	chr14	91308021	91308280	+	0	NA	intron (NM_001080414, intron 17 of 29)	intron (NM_001080414, intron 17 of 29)	-54270	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
85116	chr16	34160771	34161580	+	0	NA	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-2403	NR_162093	113218496		NR_162093		MIR9901	-	microRNA 9901	ncRNA
39807	chr11	61973751	61974050	+	0	NA	Intergenic	Intergenic	-6266	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
162906	chr3	49403851	49404380	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluJo|SINE|Alu	7861	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
134204	chr2	134582601	134582800	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	136300	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
175345	chr4	68504901	68505630	+	0	NA	Intergenic	L1P2|LINE|L1	57802	NM_014058	28983		NM_014058	ENSG00000087128	TMPRSS11E	DESC1|TMPRSS11E2	transmembrane serine protease 11E	protein-coding
137365	chr2	196166601	196167500	+	0	NA	intron (NM_004226, intron 1 of 7)	L2c|LINE|L2	4528	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
27501	chr10	32278571	32278730	+	0	NA	intron (NR_168510, intron 10 of 14)	intron (NR_168510, intron 10 of 14)	68508	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
140296	chr2	232419901	232420100	+	0	NA	Intergenic	CpG	13156	NM_031313	251		NM_031313	ENSG00000163286	ALPG	ALPPL|ALPPL2|GCAP	alkaline phosphatase, germ cell	protein-coding
88548	chr16	85461601	85463730	+	0	NA	Intergenic	CpG	-148744	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
101717	chr17	68519801	68520250	+	0	NA	intron (NM_212471, intron 2 of 10)	MLT1I|LTR|ERVL-MaLR	4631	NM_001276290	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
204652	chr7	5426551	5427250	+	0	NA	3' UTR (NM_001354886, exon 1 of 1)	3' UTR (NM_001354886, exon 1 of 1)	2027	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
231719	chr9	131747071	131748080	+	0	NA	Intergenic	Intergenic	-7499	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
59124	chr13	21347971	21348130	+	0	NA	intron (NR_046461, intron 2 of 4)	intron (NR_046461, intron 2 of 4)	-3191	NR_103841	100652865		NR_103840	ENSG00000224429	LINC00539	LINC00422	long intergenic non-protein coding RNA 539	ncRNA
91036	chr17	2848471	2849580	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	52587	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
90738	chr17	2027371	2027530	+	0	NA	Intergenic	L2c|LINE|L2	-2116	NM_178568	146760		NM_178568	ENSG00000185924	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor like 1	protein-coding
162656	chr3	48901271	48902130	+	0	NA	Intergenic	AluSg|SINE|Alu	-2818	NM_000387	788		NM_000387	ENSG00000178537	SLC25A20	CAC|CACT	solute carrier family 25 member 20	protein-coding
69231	chr14	92780221	92780680	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-13855	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
50916	chr12	49321121	49321380	+	0	NA	intron (NR_120449, intron 2 of 7)	AluSq2|SINE|Alu	-2005	NM_001278324	10024		NM_005480	ENSG00000135451	TROAP	TASTIN	trophinin associated protein	protein-coding
90569	chr17	1520101	1520300	+	0	NA	3' UTR (NM_006224, exon 12 of 12)	3' UTR (NM_006224, exon 12 of 12)	3281	NR_028514	100306951		NR_028514	ENSG00000236618	PITPNA-AS1	-	PITPNA antisense RNA 1	ncRNA
214885	chr7	151408371	151409500	+	0	NA	promoter-TSS (NR_034012)	promoter-TSS (NR_034012)	-226	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
212014	chr7	114917601	114918000	+	0	NA	Intergenic	Intergenic	-4354	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
204902	chr7	6104021	6106030	+	0	NA	promoter-TSS (NM_032172)	promoter-TSS (NM_032172)	76	NM_001365764	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
32985	chr10	110511951	110512050	+	0	NA	TTS (NM_004419)	TTS (NM_004419)	14093	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
108787	chr18	77252471	77253030	+	0	NA	intron (NM_001480, intron 1 of 2)	AluSx1|SINE|Alu	2902	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
157242	chr22	43344301	43344500	+	0	NA	Intergenic	Intergenic	-1028	NM_173050	80274		NM_152514	ENSG00000159307	SCUBE1	-	signal peptide, CUB domain and EGF like domain containing 1	protein-coding
238789	chrX	154378101	154380500	+	0	NA	promoter-TSS (NM_000117)	promoter-TSS (NM_000117)	5	NM_000117	2010		NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
225021	chr9	33138851	33139180	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	-27933	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
238617	chrX	153945871	153946450	+	0	NA	Intergenic	Intergenic	-1517	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
108619	chr18	76348901	76349330	+	0	NA	Intergenic	Intergenic	139605	NR_146507	105372207		NR_146507	ENSG00000264260	LINC01893	-	long intergenic non-protein coding RNA 1893	ncRNA
165448	chr3	98563301	98564300	+	0	NA	Intergenic	Intergenic	29811	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
211061	chr7	102466921	102467880	+	0	NA	exon (NM_152892, exon 4 of 15)	exon (NM_152892, exon 4 of 15)	1658	NR_049813	100847073		NR_049813	ENSG00000284176	MIR5090	mir-5090	microRNA 5090	ncRNA
101560	chr17	68033951	68034400	+	0	NA	Intergenic	Intergenic	-1560	NM_002266	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
109296	chr19	558801	559000	+	0	NA	Intergenic	Intergenic	-12383	NM_198591	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
28328	chr10	46398071	46398450	+	0	NA	promoter-TSS (NR_033957)	promoter-TSS (NR_033957)	-102	NR_033957	643650		NR_033957	ENSG00000285294	LINC00842	-	long intergenic non-protein coding RNA 842	ncRNA
21032	chr1	203012001	203012250	+	0	NA	intron (NM_001322959, intron 2 of 6)	intron (NM_001322959, intron 2 of 6)	4494	NM_001349859	92703		NM_138391	ENSG00000163444	TMEM183A	C1orf37	transmembrane protein 183A	protein-coding
55860	chr12	109309521	109310350	+	0	NA	promoter-TSS (NM_213596)	promoter-TSS (NM_213596)	-651	NM_213596	121643		NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
152297	chr22	20319321	20321250	+	0	NA	promoter-TSS (NM_033257)	promoter-TSS (NM_033257)	-225	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
112217	chr19	5699321	5700100	+	0	NA	intron (NR_076392, intron 10 of 18)	AluSx3|SINE|Alu	9415	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
73603	chr15	44552971	44553130	+	0	NA	intron (NM_001284335, intron 4 of 6)	AluJo|SINE|Alu	15903	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
200163	chr6	130524551	130524900	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	87608	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
95743	chr17	38593201	38594080	+	0	NA	intron (NM_025248, intron 1 of 18)	MIR|SINE|MIR	12312	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
236542	chrX	72142171	72142430	+	0	NA	exon (NM_001013627, exon 7 of 8)	exon (NM_001013627, exon 7 of 8)	-1884	NM_207422								
46686	chr11	128752451	128753450	+	0	NA	intron (NM_001167681, intron 2 of 9)	intron (NM_001167681, intron 2 of 9)	-56927	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
26709	chr10	22657771	22658530	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	55958	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
217183	chr8	26313301	26313980	+	0	NA	intron (NM_002717, intron 2 of 9)	MLT1D|LTR|ERVL-MaLR	20424	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
234007	chrX	3692171	3692530	+	0	NA	intron (NM_005044, intron 1 of 8)	MER20|DNA|hAT-Charlie	21299	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
133933	chr2	130428451	130429000	+	0	NA	promoter-TSS (NR_046258)	promoter-TSS (NR_046258)	-179	NR_046259	100216479		NR_046258		FAR2P2	-	fatty acyl-CoA reductase 2 pseudogene 2	pseudo
197253	chr6	70221071	70221300	+	0	NA	intron (NR_165185, intron 32 of 32)	intron (NR_165185, intron 32 of 32)	62012	NM_001377290	1297		NM_001851	ENSG00000112280	COL9A1	DJ149L1.1.2|EDM6|MED|STL4	collagen type IX alpha 1 chain	protein-coding
104009	chr17	80106101	80106880	+	0	NA	intron (NM_000152, intron 3 of 19)	intron (NM_000152, intron 3 of 19)	4909	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
60847	chr13	45472971	45473130	+	0	NA	intron (NM_031431, intron 1 of 22)	AluY|SINE|Alu	8111	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
231687	chr9	131707471	131708030	+	0	NA	intron (NM_001377935, intron 1 of 26)	LTR49|LTR|ERV1	2092	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
54016	chr12	75485301	75486380	+	0	NA	intron (NM_006851, intron 2 of 5)	MamRep564|Unknown|Unknown	5085	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
101689	chr17	68435721	68436830	+	0	NA	intron (NR_135470, intron 5 of 12)	intron (NR_135470, intron 5 of 12)	-11727	NR_030365	693220		NR_030365	ENSG00000207561	MIR635	MIRN635|hsa-mir-635	microRNA 635	ncRNA
78020	chr15	89890521	89891680	+	0	NA	intron (NM_001199058, intron 5 of 9)	intron (NM_001199058, intron 5 of 9)	2894	NM_005829	10239		NM_005829	ENSG00000157823	AP3S2	AP3S3|sigma3b	adaptor related protein complex 3 subunit sigma 2	protein-coding
160528	chr3	30652901	30653950	+	0	NA	intron (NM_001024847, intron 4 of 7)	AluSx1|SINE|Alu	46824	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
30399	chr10	78406921	78407480	+	0	NA	Intergenic	Intergenic	139858	NR_073447	414243		NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
129547	chr2	69798521	69799380	+	0	NA	promoter-TSS (NR_164153)	promoter-TSS (NR_164153)	48	NR_164155	107985770		NR_164153	ENSG00000288869	SMANTIS	ANXA4-AS|n342419	SMARCA4 interacting SWI/SNF chromatin remodeling complex scaffold lncRNA	ncRNA
55401	chr12	104469251	104469800	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	12577	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
51409	chr12	52005071	52005230	+	0	NA	Intergenic	Intergenic	-1796	NM_181711	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
55895	chr12	109722301	109723000	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	8825	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
114513	chr19	12795551	12795650	+	0	NA	Intergenic	AluY|SINE|Alu	4114	NM_002229	3726		NM_002229	ENSG00000171223	JUNB	AP-1	JunB proto-oncogene, AP-1 transcription factor subunit	protein-coding
154593	chr22	36283271	36283450	+	0	NA	intron (NM_002473, intron 40 of 40)	AluSq2|SINE|Alu	3547	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
19046	chr1	169701151	169701850	+	0	NA	intron (NM_000655, intron 7 of 8)	intron (NM_000655, intron 7 of 8)	7357	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
109268	chr19	537321	537880	+	0	NA	intron (NM_004359, intron 4 of 4)	AluY|SINE|Alu	5840	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
230803	chr9	129012871	129013230	+	0	NA	intron (NR_163192, intron 3 of 10)	intron (NR_163192, intron 3 of 10)	15281	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
61215	chr13	49524701	49524930	+	0	NA	intron (NR_135322, intron 7 of 8)	intron (NR_135322, intron 7 of 8)	27759	NM_001040444	51131		NM_001040443	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
20947	chr1	202253671	202254030	+	0	NA	intron (NM_001017404, intron 4 of 15)	AluYa5|SINE|Alu	39695	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
81623	chr16	10859001	10859600	+	0	NA	Intergenic	Intergenic	-17898	NM_000246	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
219436	chr8	72004501	72005100	+	0	NA	intron (NR_033652, intron 4 of 4)	L2b|LINE|L2	70784	NM_007332	8989		NM_007332	ENSG00000104321	TRPA1	ANKTM1|FEPS|FEPS1|p120	transient receptor potential cation channel subfamily A member 1	protein-coding
215642	chr8	233951	234280	+	0	NA	intron (NM_001287254, intron 1 of 5)	intron (NM_001287254, intron 1 of 5)	1659	NM_001042416	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
184793	chr5	111211471	111211850	+	0	NA	Intergenic	L1MCc|LINE|L1	-11923	NM_001323375	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
145235	chr20	38925901	38927030	+	0	NA	promoter-TSS (NM_030919)	promoter-TSS (NM_030919)	48	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
103980	chr17	80006751	80006850	+	0	NA	intron (NM_019020, intron 3 of 11)	AluJb|SINE|Alu	29072	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
136088	chr2	173358451	173358750	+	0	NA	intron (NM_031942, intron 1 of 9)	intron (NM_031942, intron 1 of 9)	3728	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
79282	chr16	534751	535350	+	0	NA	promoter-TSS (NR_049852)	promoter-TSS (NR_049852)	-266	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	ncRNA
73069	chr15	40913851	40914630	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	7431	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
3193	chr1	13732921	13734230	+	0	NA	intron (NM_001135610, intron 4 of 7)	MIR|SINE|MIR	-15840	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
199173	chr6	111752451	111752550	+	0	NA	intron (NM_002037, intron 3 of 13)	L2c|LINE|L2	6631	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
13767	chr1	117059201	117060740	+	0	NA	promoter-TSS (NR_110786)	promoter-TSS (NR_110786)	-356	NM_003594	8458		NM_003594	ENSG00000116830	TTF2	F2|HuF2|ZGRF6	transcription termination factor 2	protein-coding
141976	chr20	1345251	1345550	+	0	NA	intron (NR_040047, intron 1 of 2)	intron (NR_040047, intron 1 of 2)	-16261	NM_080489	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
9551	chr1	51564051	51564350	+	0	NA	intron (NR_161259, intron 7 of 8)	intron (NR_161259, intron 7 of 8)	19531	NR_161259	441884		NR_161259		CALR4P	-	calreticulin 4, pseudogene	pseudo
152122	chr22	19944471	19944630	+	0	NA	intron (NM_000754, intron 1 of 5)	AluY|SINE|Alu	-2732	NM_001352300	10587		NM_006440	ENSG00000184470	TXNRD2	GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2|TXNR2	thioredoxin reductase 2	protein-coding
191148	chr6	4607201	4608200	+	0	NA	Intergenic	Intergenic	-2865	NR_122107	497048		NM_001011540	ENSG00000205444	KU-MEL-3	-	uncharacterized LOC497048	ncRNA
129825	chr2	72149151	72149600	+	0	NA	Intergenic	CpG-16143	-1513	NM_019885	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
104303	chr17	80889471	80890800	+	0	NA	intron (NM_020761, intron 17 of 33)	intron (NM_020761, intron 17 of 33)	81078	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
190937	chr6	2889221	2889680	+	0	NA	3' UTR (NM_004155, exon 7 of 7)	3' UTR (NM_004155, exon 7 of 7)	5462	NR_110841	101927730		NR_110841		SERPINB9-AS1	-	SERPINB9 antisense RNA 1	ncRNA
140268	chr2	232317451	232317550	+	0	NA	intron (NR_046476, intron 14 of 20)	AluSz6|SINE|Alu	-61251	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
184694	chr5	108750951	108751250	+	0	NA	intron (NR_146155, intron 1 of 19)	AluSp|SINE|Alu	2152	NM_001308028	2241		NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding
212387	chr7	128058971	128059930	+	0	NA	intron (NM_014390, intron 16 of 23)	intron (NM_014390, intron 16 of 23)	-22411	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
29189	chr10	68966251	68966550	+	0	NA	intron (NM_004728, intron 5 of 14)	intron (NM_004728, intron 5 of 14)	9960	NM_001256910	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
164812	chr3	70956471	70957050	+	0	NA	non-coding (NR_146142, exon 20 of 20)	non-coding (NR_146142, exon 20 of 20)	108164	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
24047	chr1	235292471	235293080	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-34441	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
18331	chr1	161191371	161191530	+	0	NA	exon (NM_005099, exon 9 of 9)	exon (NM_005099, exon 9 of 9)	-5967	NM_001377298	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
174449	chr4	39705701	39705900	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSz6|SINE|Alu	7664	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
47382	chr12	2693101	2693650	+	0	NA	3' UTR (NM_001129833, exon 47 of 47)	3' UTR (NM_001129833, exon 47 of 47)	-2218	NR_045725	100652846		NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	ncRNA
135416	chr2	161135071	161135680	+	0	NA	Intergenic	Intergenic	-1580	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
7368	chr1	32820101	32820530	+	0	NA	intron (NM_022753, intron 1 of 6)	AluSx|SINE|Alu	-2283	NM_003680	8565		NM_003680	ENSG00000134684	YARS1	CMTDIC|IMNEPD2|TYRRS|YARS|YRS|YTS	tyrosyl-tRNA synthetase 1	protein-coding
219897	chr8	85720351	85720650	+	0	NA	Intergenic	MIR|SINE|MIR	5656	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
28964	chr10	63241701	63242650	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	27048	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
47518	chr12	4143811	4144330	+	0	NA	Intergenic	Intergenic	-129692	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
112030	chr19	5077701	5078650	+	0	NA	intron (NM_001370093, intron 8 of 11)	intron (NM_001370093, intron 8 of 11)	109062	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
202531	chr6	158624521	158625180	+	0	NA	intron (NR_164859, intron 11 of 16)	intron (NR_164859, intron 11 of 16)	15143	NR_106981	102465694		NR_106981	ENSG00000278571	MIR7161	hsa-mir-7161	microRNA 7161	ncRNA
233332	chr9	137437671	137438030	+	0	NA	intron (NM_198585, intron 3 of 8)	intron (NM_198585, intron 3 of 8)	3507	NM_198585	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
228532	chr9	100598321	100599330	+	0	NA	Intergenic	CpG	20746	NM_001018116	347273		NM_001018116	ENSG00000170681	CAVIN4	MURC|cavin-4	caveolae associated protein 4	protein-coding
72804	chr15	40064421	40064680	+	0	NA	non-coding (NR_040059, exon 3 of 4)	non-coding (NR_040059, exon 3 of 4)	25239	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
170712	chr3	187979401	187979890	+	0	NA	Intergenic	Intergenic	-3238	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
53980	chr12	74889801	74890380	+	0	NA	Intergenic	Intergenic	319658	NM_139136	3747		NM_139136	ENSG00000166006	KCNC2	DEE103|KV3.2	potassium voltage-gated channel subfamily C member 2	protein-coding
122350	chr19	49325151	49325250	+	0	NA	promoter-TSS (NM_014037)	promoter-TSS (NM_014037)	-9	NM_014037	28968		NM_014037	ENSG00000063127	SLC6A16	NT5|NTT5	solute carrier family 6 member 16	protein-coding
127915	chr2	46334151	46334250	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	36793	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
42729	chr11	72692701	72693050	+	0	NA	intron (NM_015242, intron 27 of 32)	intron (NM_015242, intron 27 of 32)	-7599	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
202816	chr6	159684921	159685600	+	0	NA	intron (NM_001024466, intron 2 of 4)	AluSp|SINE|Alu	7981	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
193169	chr6	29706951	29707780	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	-15975	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
153641	chr22	28790171	28790750	+	0	NA	Intergenic	AluSx4|SINE|Alu	10112	NM_001079539	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
28098	chr10	43388271	43389030	+	0	NA	intron (NM_001098204, intron 3 of 3)	intron (NM_001098204, intron 3 of 3)	8181	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
78365	chr15	91422851	91423250	+	0	NA	Intergenic	Intergenic	-40289	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
45974	chr11	121461651	121462250	+	0	NA	intron (NM_003105, intron 1 of 47)	MIRc|SINE|MIR	9636	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
182242	chr5	57170571	57171050	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3138	NM_001203246	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
43343	chr11	76629371	76629930	+	0	NA	Intergenic	Intergenic	40288	NM_001370189	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
51521	chr12	52246751	52247050	+	0	NA	intron (NR_146274, intron 1 of 1)	MIR3|SINE|MIR	548	NR_146274	109729127		NR_146274	ENSG00000257671	KRT7-AS	-	KRT7 antisense RNA 1	ncRNA
55529	chr12	105324151	105324550	+	0	NA	intron (NR_131986, intron 1 of 2)	MLT1I|LTR|ERVL-MaLR	2667	NR_131986	105369954		NR_131986	ENSG00000257642	C12orf75-AS1	KCCAT198	C12orf75 antisense RNA 1	ncRNA
175521	chr4	74376971	74377130	+	0	NA	intron (NM_001432, intron 1 of 4)	intron (NM_001432, intron 1 of 4)	11905	NM_001432	2069		NM_001432	ENSG00000124882	EREG	EPR|ER|Ep	epiregulin	protein-coding
62456	chr13	99355301	99355500	+	0	NA	promoter-TSS (NR_030353)	promoter-TSS (NR_030353)	-731	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
195358	chr6	36662071	36663030	+	0	NA	Intergenic	Intergenic	12576	NR_109836	101154753		NR_109836	ENSG00000281450	PANDAR	PANDA	promoter of CDKN1A antisense DNA damage activated RNA	ncRNA
186003	chr5	133928871	133929230	+	0	NA	Intergenic	Intergenic	15373	NR_131252	105664404		NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
212881	chr7	130874651	130874750	+	0	NA	Intergenic	Intergenic	2110	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
169629	chr3	171286701	171287100	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	173505	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
228905	chr9	113056321	113057280	+	0	NA	promoter-TSS (NM_003408)	promoter-TSS (NM_003408)	-76	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
196523	chr6	43774501	43775280	+	0	NA	intron (NM_001171624, intron 2 of 7)	intron (NM_001171624, intron 2 of 7)	2922	NM_001287044	7422		NM_003376	ENSG00000112715	VEGFA	L-VEGF|MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
167427	chr3	129028271	129028430	+	0	NA	intron (NM_024768, intron 2 of 7)	AluSx1|SINE|Alu	-24348	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
78390	chr15	91867351	91867650	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	13196	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
199720	chr6	125392301	125392500	+	0	NA	Intergenic	AluY|SINE|Alu	-90433	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
37112	chr11	13296001	13296200	+	0	NA	intron (NR_147787, intron 1 of 19)	CR1_Mam|LINE|CR1	18310	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
130233	chr2	84829371	84829630	+	0	NA	intron (NM_001080824, intron 4 of 5)	(AC)n|Simple_repeat|Simple_repeat	51584	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
66050	chr14	58339021	58339500	+	0	NA	intron (NM_023000, intron 11 of 23)	AluJb|SINE|Alu	40705	NM_002892	5926		NM_002892	ENSG00000032219	ARID4A	RBBP-1|RBBP1|RBP-1|RBP1	AT-rich interaction domain 4A	protein-coding
219391	chr8	70541271	70541630	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	66219	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
193010	chr6	28251521	28252800	+	0	NA	5' UTR (NM_019110, exon 1 of 5)	5' UTR (NM_019110, exon 1 of 5)	109	NM_019110	387032		NM_019110	ENSG00000187626	ZKSCAN4	P1P373C6|ZNF307|ZNF427|ZSCAN36	zinc finger with KRAB and SCAN domains 4	protein-coding
207731	chr7	48052821	48053080	+	0	NA	intron (NM_001267866, intron 6 of 6)	intron (NM_001267866, intron 6 of 6)	17407	NM_001267866	136288		NM_001100159	ENSG00000164746	C7orf57	-	chromosome 7 open reading frame 57	protein-coding
170441	chr3	185904251	185904550	+	0	NA	Intergenic	HAL1|LINE|L1	33614	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
228655	chr9	107260501	107260700	+	0	NA	Intergenic	Intergenic	-22679	NM_002874	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
221458	chr8	124440151	124441280	+	0	NA	Intergenic	MER4C|LTR|ERV1	-10105	NM_017956	55039		NM_017956	ENSG00000183665	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog	protein-coding
30029	chr10	73795201	73795600	+	0	NA	intron (NM_015037, intron 14 of 25)	intron (NM_015037, intron 14 of 25)	5999	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
29387	chr10	70117571	70117930	+	0	NA	intron (NM_032797, intron 6 of 8)	intron (NM_032797, intron 6 of 8)	15075	NM_032797	84883		NM_032797	ENSG00000042286	AIFM2	AMID|FSP1|PRG3	apoptosis inducing factor mitochondria associated 2	protein-coding
143640	chr20	31848951	31849380	+	0	NA	intron (NM_001320479, intron 8 of 9)	intron (NM_001320479, intron 8 of 9)	-3561	NM_004118	2307		NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
120856	chr19	45525521	45525780	+	0	NA	intron (NM_003370, intron 11 of 12)	AluSx1|SINE|Alu	18171	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
143996	chr20	32991301	32991900	+	0	NA	intron (NM_080675, intron 8 of 12)	intron (NM_080675, intron 8 of 12)	12833	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
61654	chr13	73933121	73933380	+	0	NA	intron (NM_007249, intron 3 of 7)	L1MEc|LINE|L1	200679	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
179244	chr4	174319021	174319480	+	0	NA	3' UTR (NM_001040157, exon 12 of 12)	3' UTR (NM_001040157, exon 12 of 12)	35339	NM_001040157	80817		NM_030633	ENSG00000164118	CEP44	KIAA1712|PS1TP3	centrosomal protein 44	protein-coding
208098	chr7	56371451	56371980	+	0	NA	Intergenic	Intergenic	76660	NR_029420	650226		NR_029420		LOC650226	-	ankyrin repeat domain containing 26 pseudogene	pseudo
218864	chr8	60519021	60519800	+	0	NA	intron (NM_001242644, intron 1 of 6)	intron (NM_001242644, intron 1 of 6)	2423	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
200310	chr6	132963001	132963300	+	0	NA	Intergenic	Intergenic	-124930	NR_026969	285735		NM_001037231	ENSG00000231023	LINC00326	NCRNA00326	long intergenic non-protein coding RNA 326	ncRNA
188416	chr5	154189421	154190990	+	0	NA	promoter-TSS (NM_198321)	promoter-TSS (NM_198321)	-528	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
223114	chr8	143466051	143466350	+	0	NA	intron (NM_015117, intron 8 of 11)	intron (NM_015117, intron 8 of 11)	-35468	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
12551	chr1	108660701	108662250	+	0	NA	promoter-TSS (NM_001102592)	promoter-TSS (NM_001102592)	51	NM_144584	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
141588	chr2	241617421	241618480	+	0	NA	promoter-TSS (NM_001164356)	promoter-TSS (NM_001164356)	-449	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
187297	chr5	141598651	141599450	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	19950	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
27429	chr10	31687801	31688080	+	0	NA	Intergenic	L1MDa|LINE|L1	220986	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
90820	chr17	2271971	2272400	+	0	NA	intron (NM_017575, intron 8 of 18)	intron (NM_017575, intron 8 of 18)	-6000	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
98243	chr17	46167651	46167950	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	24982	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
222423	chr8	134679271	134679430	+	0	NA	intron (NM_001289394, intron 1 of 16)	L1PA7|LINE|L1	17205	NM_001029939	57623		NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
163087	chr3	50096071	50096850	+	0	NA	intron (NR_036627, intron 4 of 23)	AluJb|SINE|Alu	4528	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
148518	chr20	64091221	64091630	+	0	NA	intron (NM_001200019, intron 2 of 5)	intron (NM_001200019, intron 2 of 5)	-1263	NM_001318855	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
155166	chr22	37688051	37688380	+	0	NA	intron (NM_024313, intron 2 of 5)	intron (NM_024313, intron 2 of 5)	1872	NM_024313	79159		NM_024313	ENSG00000273899	NOL12	Nop25|dJ37E16.7	nucleolar protein 12	protein-coding
134810	chr2	148521251	148521350	+	0	NA	Intergenic	Intergenic	-123451	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
181486	chr5	42955301	42955500	+	0	NA	Intergenic	MER11C|LTR|ERVK	37933	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
23407	chr1	228274351	228274780	+	0	NA	intron (NM_052843, intron 19 of 80)	intron (NM_052843, intron 19 of 80)	-60901	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
34929	chr11	430221	430680	+	0	NA	intron (NM_001347882, intron 6 of 21)	intron (NM_001347882, intron 6 of 21)	11561	NM_001347882	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
208066	chr7	56082671	56083030	+	0	NA	intron (NR_047689, intron 5 of 8)	AluSg|SINE|Alu	10102	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
187122	chr5	140415101	140416000	+	0	NA	intron (NM_020690, intron 1 of 35)	AluSz|SINE|Alu	13717	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
223636	chr8	144334971	144336030	+	0	NA	intron (NM_031309, intron 1 of 1)	CpG	982	NM_031309	83482		NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding
30197	chr10	74651721	74651980	+	0	NA	intron (NM_001369124, intron 8 of 9)	L1ME2|LINE|L1	-122526	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
83848	chr16	28874651	28874750	+	0	NA	TTS (NM_001308294)	TTS (NM_001308294)	-3788	NM_004320	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
210500	chr7	100175751	100176430	+	0	NA	intron (NM_152742, intron 2 of 9)	intron (NM_152742, intron 2 of 9)	1291	NM_152742	221914		NM_152742	ENSG00000213420	GPC2	-	glypican 2	protein-coding
100001	chr17	57851421	57851900	+	0	NA	Intergenic	Intergenic	-1616	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
143968	chr20	32841401	32842100	+	0	NA	intron (NM_012325, intron 5 of 6)	MIRb|SINE|MIR	-17173	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
67766	chr14	73727151	73727700	+	0	NA	intron (NM_001043318, intron 5 of 11)	intron (NM_001043318, intron 5 of 11)	-13041	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
123130	chr19	52007651	52008780	+	0	NA	promoter-TSS (NM_198480)	promoter-TSS (NM_198480)	-4	NM_001199324	284370		NM_198480	ENSG00000197619	ZNF615	-	zinc finger protein 615	protein-coding
63564	chr14	20412151	20412900	+	0	NA	intron (NM_007110, intron 1 of 54)	L1ME4b|LINE|L1	976	NM_007110	7011		NM_007110	ENSG00000129566	TEP1	TLP1|TP1|TROVE1|VAULT2|p240	telomerase associated protein 1	protein-coding
207959	chr7	54996021	54996280	+	0	NA	Intergenic	L2|LINE|L2	-22867	NM_001346898	1956		NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|ERRP|HER1|NISBD2|PIG61|mENA	epidermal growth factor receptor	protein-coding
193237	chr6	29924351	29925180	+	0	NA	non-coding (NR_001317, exon 1 of 1)	non-coding (NR_001317, exon 1 of 1)	2450	NR_001317	80868		NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B	ncRNA
163314	chr3	50358701	50360580	+	0	NA	promoter-TSS (NM_007024)	promoter-TSS (NM_007024)	-119	NM_007024	11070		NM_007024	ENSG00000126062	TMEM115	PL6	transmembrane protein 115	protein-coding
14386	chr1	144179351	144179450	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	68805	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
137957	chr2	201139271	201139430	+	0	NA	promoter-TSS (NM_001202515)	promoter-TSS (NM_001202515)	-925	NM_001202515	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
194757	chr6	33978501	33978700	+	0	NA	Intergenic	Intergenic	21451	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275|mir-1275	microRNA 1275	ncRNA
149280	chr21	26845201	26845800	+	0	NA	promoter-TSS (NM_006988)	promoter-TSS (NM_006988)	-91	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
16469	chr1	154611821	154612530	+	0	NA	intron (NM_001365046, intron 1 of 15)	Charlie20a|DNA|hAT-Charlie	-3378	NM_001365048	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
139409	chr2	222427771	222428230	+	0	NA	intron (NM_152386, intron 1 of 4)	MIR3|SINE|MIR	3457	NM_152386	130367		NM_152386	ENSG00000163082	SGPP2	SPP2|SPPase2	sphingosine-1-phosphate phosphatase 2	protein-coding
56074	chr12	110602121	110602930	+	0	NA	Intergenic	Intergenic	-11604	NM_001319681	79600		NM_024549	ENSG00000204852	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
232152	chr9	134064321	134064580	+	0	NA	intron (NM_007371, intron 1 of 11)	AluSx1|SINE|Alu	3576	NM_007371	8019		NM_007371	ENSG00000169925	BRD3	FSHRG2|ORFX|RING3L	bromodomain containing 3	protein-coding
209407	chr7	76341621	76342230	+	0	NA	intron (NM_012479, intron 1 of 1)	intron (NM_012479, intron 1 of 1)	17066	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
100334	chr17	59869271	59869630	+	0	NA	intron (NM_001193612, intron 6 of 8)	AluSx4|SINE|Alu	23493	NM_016261	51174		NM_016261	ENSG00000108423	TUBD1	TUBD	tubulin delta 1	protein-coding
176774	chr4	102469871	102470230	+	0	NA	intron (NR_136202, intron 1 of 4)	intron (NR_136202, intron 1 of 4)	-31309	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
111103	chr19	3202971	3203330	+	0	NA	intron (NM_020170, intron 6 of 14)	AluSq2|SINE|Alu	17220	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
74153	chr15	55272251	55272750	+	0	NA	intron (NM_183235, intron 1 of 6)	MER5A1|DNA|hAT-Charlie	-1578	NM_183236	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
174476	chr4	39818251	39818550	+	0	NA	Intergenic	AluY|SINE|Alu	120264	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
171155	chr3	195621971	195622900	+	0	NA	Intergenic	Intergenic	29724	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
234834	chrX	24434921	24435330	+	0	NA	Intergenic	L1MB7|LINE|L1	-30161	NM_001142386	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
83141	chr16	23156901	23157300	+	0	NA	Intergenic	L2a|LINE|L2	-7830	NM_020718	57478		NM_020718	ENSG00000103404	USP31	-	ubiquitin specific peptidase 31	protein-coding
137607	chr2	197295771	197296430	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	6419	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
159281	chr3	12968871	12969200	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-1305	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
207609	chr7	44978501	44979720	+	0	NA	promoter-TSS (NM_033054)	promoter-TSS (NM_033054)	-95	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
173783	chr4	17583171	17583600	+	0	NA	intron (NM_015907, intron 4 of 12)	intron (NM_015907, intron 4 of 12)	6187	NM_015907	51056		NM_015907	ENSG00000002549	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
44785	chr11	112798051	112798150	+	0	NA	Intergenic	Intergenic	-163320	NM_001076682	4684		NM_000615	ENSG00000149294	NCAM1	CD56|MSK39|NCAM	neural cell adhesion molecule 1	protein-coding
57484	chr12	122081051	122081150	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	2344	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
115118	chr19	14360221	14360680	+	0	NA	intron (NR_134908, intron 1 of 3)	AluSz|SINE|Alu	3540	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
178032	chr4	139528501	139528950	+	0	NA	intron (NM_030648, intron 4 of 7)	MLT1H|LTR|ERVL-MaLR	28044	NM_030648	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
155198	chr22	37822351	37822850	+	0	NA	promoter-TSS (NM_003614)	promoter-TSS (NM_003614)	-782	NM_003614	8484		NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
204535	chr7	4849651	4849750	+	0	NA	intron (NM_018059, intron 2 of 14)	Kanga1d|DNA|TcMar-Tc2	-12250	NR_145804	109623455		NR_145804		SNORD165	-	small nucleolar RNA, C/D box 165	snoRNA
129792	chr2	71331321	71332500	+	0	NA	intron (NM_014497, intron 1 of 27)	CpG	128	NM_014497	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
84597	chr16	30662521	30663130	+	0	NA	exon (NM_001105079, exon 6 of 18)	exon (NM_001105079, exon 6 of 18)	4394	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
186309	chr5	134577001	134577200	+	0	NA	intron (NM_001289985, intron 11 of 11)	intron (NM_001289985, intron 11 of 11)	50992	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
176673	chr4	100209001	100209200	+	0	NA	intron (NR_125924, intron 4 of 4)	MER21B|LTR|ERVL	-18632	NM_145244	115265		NM_145244	ENSG00000145358	DDIT4L	REDD2|Rtp801L	DNA damage inducible transcript 4 like	protein-coding
25584	chr10	8038921	8039330	+	0	NA	Intergenic	Intergenic	13366	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
141949	chr20	1280851	1281150	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	14706	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
149001	chr21	14491001	14491400	+	0	NA	intron (NM_001256370, intron 8 of 8)	MER34|LTR|ERV1	55115	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
1767	chr1	6030221	6030900	+	0	NA	intron (NM_172130, intron 1 of 14)	intron (NM_172130, intron 1 of 14)	-4128	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
4944	chr1	23964921	23965900	+	0	NA	non-coding (NR_034035, exon 7 of 7)	non-coding (NR_034035, exon 7 of 7)	5582	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
117260	chr19	19454201	19454400	+	0	NA	intron (NM_001384516, intron 2 of 12)	AluJo|SINE|Alu	19237	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
150484	chr21	42665551	42666380	+	0	NA	intron (NM_001001580, intron 1 of 13)	intron (NM_001001580, intron 1 of 13)	12213	NM_001001580	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
149334	chr21	29053751	29054050	+	0	NA	exon (NM_001001992, exon 17 of 18)	exon (NM_001001992, exon 17 of 18)	19748	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
7197	chr1	32279851	32280300	+	0	NA	intron (NM_001042771, intron 11 of 12)	intron (NM_001042771, intron 11 of 12)	5964	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
116975	chr19	18874601	18874800	+	0	NA	intron (NM_021267, intron 6 of 7)	intron (NM_021267, intron 6 of 7)	21458	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
100280	chr17	59650871	59651030	+	0	NA	intron (NM_004859, intron 4 of 31)	L1MD1|LINE|L1	31055	NM_004859	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
45627	chr11	118922701	118923280	+	0	NA	intron (NM_001378214, intron 1 of 8)	intron (NM_001378214, intron 1 of 8)	2936	NR_165445	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
89905	chr16	89697521	89697900	+	0	NA	exon (NM_152339, exon 3 of 3)	exon (NM_152339, exon 3 of 3)	3995	NM_152339	124044		NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
107052	chr18	32152851	32153150	+	0	NA	Intergenic	L1MA4|LINE|L1	-37039	NM_001308171	4225		NM_005925	ENSG00000141434	MEP1B	-	meprin A subunit beta	protein-coding
106799	chr18	23929351	23929800	+	0	NA	intron (NM_198129, intron 64 of 74)	intron (NM_198129, intron 64 of 74)	56555	NM_001127718	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
48954	chr12	12806071	12806430	+	0	NA	Intergenic	Intergenic	-7096	NM_016355	51202		NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD-box helicase 47	protein-coding
62305	chr13	99014621	99014880	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	1035	NM_001366677	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
236797	chrX	79149551	79150150	+	0	NA	intron (NM_032553, intron 1 of 2)	intron (NM_032553, intron 1 of 2)	5162	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
82887	chr16	21583821	21584780	+	0	NA	Intergenic	AluJb|SINE|Alu	-12921	NM_001288659	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
173684	chr4	15349551	15349650	+	0	NA	intron (NM_001135170, intron 1 of 2)	L4_B_Mam|LINE|RTE-X	9612	NM_001135170	114905		NM_031911	ENSG00000163145	C1QTNF7	CTRP7|ZACRP7	C1q and TNF related 7	protein-coding
239138	chrY	11318701	11319200	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1102640	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
159000	chr3	10336171	10336730	+	0	NA	intron (NM_001330611, intron 19 of 21)	intron (NM_001330611, intron 19 of 21)	6221	NR_036084	100422933		NR_036084	ENSG00000264534	MIR378B	-	microRNA 378b	ncRNA
195671	chr6	38164621	38165050	+	0	NA	Intergenic	Intergenic	-316761	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
61333	chr13	50531971	50532200	+	0	NA	Intergenic	Intergenic	-4636	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
51670	chr12	53062751	53063350	+	0	NA	intron (NM_198316, intron 25 of 28)	intron (NM_198316, intron 25 of 28)	6106	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
165838	chr3	105846551	105846850	+	0	NA	intron (NR_135807, intron 3 of 20)	intron (NR_135807, intron 3 of 20)	20891	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
146916	chr20	51608021	51608380	+	0	NA	intron (NM_006045, intron 25 of 27)	intron (NM_006045, intron 25 of 27)	-45361	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
16593	chr1	155044321	155045430	+	0	NA	TTS (NR_040773)	TTS (NR_040773)	6290	NR_040772	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
65354	chr14	50365121	50365380	+	0	NA	intron (NM_001282236, intron 2 of 8)	L1M5|LINE|L1	31631	NM_001367065	8814		NM_004196	ENSG00000100490	CDKL1	KKIALRE|P42	cyclin dependent kinase like 1	protein-coding
138078	chr2	201964651	201965030	+	0	NA	Intergenic	Intergenic	-69747	NM_003507	8324		NM_003507	ENSG00000155760	FZD7	FzE3	frizzled class receptor 7	protein-coding
127103	chr2	37633351	37633450	+	0	NA	Intergenic	Intergenic	38242	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
24451	chr1	243807321	243807930	+	0	NA	intron (NM_005465, intron 2 of 13)	L1PA5|LINE|L1	35657	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
160951	chr3	36942671	36942830	+	0	NA	intron (NM_001329998, intron 1 of 23)	intron (NM_001329998, intron 1 of 23)	2304	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
234050	chrX	6533201	6533430	+	0	NA	TTS (NM_016379)	TTS (NM_016379)	1803	NM_016379	51481		NM_016379	ENSG00000169059	VCX3A	VCX-8r|VCX-A|VCX3|VCX8R|VCXA	variable charge X-linked 3A	protein-coding
238910	chrX	154714721	154715350	+	0	NA	intron (NR_104114, intron 2 of 8)	intron (NR_104114, intron 2 of 8)	36042	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
67562	chr14	71331501	71331700	+	0	NA	intron (NM_001354287, intron 2 of 23)	intron (NM_001354287, intron 2 of 23)	11124	NM_015556	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
124661	chr2	3180571	3181030	+	0	NA	Intergenic	CpG	-54774	NR_110228	101927554		NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA
89229	chr16	88631471	88631630	+	0	NA	3' UTR (NM_001294340, exon 19 of 19)	3' UTR (NM_001294340, exon 19 of 19)	-7022	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
226194	chr9	65243621	65243950	+	0	NA	Intergenic	Intergenic	41424	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
151482	chr21	46284351	46284650	+	0	NA	exon (NM_003906, exon 1 of 28)	exon (NM_003906, exon 1 of 28)	1111	NM_003906	8888		NM_003906	ENSG00000160294	MCM3AP	GANP|MAP80|PNRIID|SAC3	minichromosome maintenance complex component 3 associated protein	protein-coding
19274	chr1	172724321	172724650	+	0	NA	Intergenic	Intergenic	65382	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
178298	chr4	145132601	145133330	+	0	NA	TTS (NM_001366057)	TTS (NM_001366057)	-34424	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
185162	chr5	119337371	119337890	+	0	NA	intron (NM_001286814, intron 1 of 1)	intron (NM_001286814, intron 1 of 1)	4455	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
37951	chr11	34440171	34440330	+	0	NA	intron (NM_001752, intron 1 of 12)	intron (NM_001752, intron 1 of 12)	1316	NM_001752	847		NM_001752	ENSG00000121691	CAT	-	catalase	protein-coding
188325	chr5	151219901	151220950	+	0	NA	non-coding (NR_160730, exon 3 of 4)	non-coding (NR_160730, exon 3 of 4)	3667	NM_015621	26112		NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
209044	chr7	74660801	74661400	+	0	NA	intron (NM_001163636, intron 1 of 33)	intron (NM_001163636, intron 1 of 33)	3382	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
95784	chr17	38704601	38706400	+	0	NA	TTS (NR_158157).2	TTS (NR_158157).2	227	NM_005937	4302		NM_005937	ENSG00000275023	MLLT6	AF17	MLLT6, PHD finger containing	protein-coding
140323	chr2	232525101	232525300	+	0	NA	promoter-TSS (NM_001311196)	promoter-TSS (NM_001311196)	-960	NM_001256657	1144		NM_000751	ENSG00000135902	CHRND	ACHRD|CMS2A|CMS3A|CMS3B|CMS3C|FCCMS|SCCMS	cholinergic receptor nicotinic delta subunit	protein-coding
231980	chr9	133251851	133252550	+	0	NA	3' UTR (NM_020469, exon 7 of 7)	3' UTR (NM_020469, exon 7 of 7)	23001	NM_020469	28		NM_020469	ENSG00000175164	ABO	A3GALNT|A3GALT1|GTB|NAGAT	ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase	protein-coding
168160	chr3	139387371	139387730	+	0	NA	intron (NM_004766, intron 1 of 21)	L2c|LINE|L2	2097	NM_004766	9276		NM_004766	ENSG00000184432	COPB2	MCPH19|OPDD|beta'-COP	COPI coat complex subunit beta 2	protein-coding
160601	chr3	31234101	31234550	+	0	NA	Intergenic	Intergenic	-72538	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
187279	chr5	141556471	141556900	+	0	NA	intron (NM_005219, intron 17 of 27)	AluSx|SINE|Alu	-1626	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
7284	chr1	32386821	32387500	+	0	NA	intron (NM_018045, intron 2 of 10)	MIR3|SINE|MIR	7281	NM_018045	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
53482	chr12	66170951	66171050	+	0	NA	promoter-TSS (NM_001282610)	promoter-TSS (NM_001282610)	-928	NM_001282610	51643		NM_016056	ENSG00000155957	TMBIM4	CGI-119|GAAP|LFG4|S1R|ZPRO	transmembrane BAX inhibitor motif containing 4	protein-coding
14718	chr1	145960121	145961160	+	0	NA	exon (NM_001039888, exon 4 of 4)	exon (NM_001039888, exon 4 of 4)	-2623	NM_153713	128077		NM_153713	ENSG00000271601	LIX1L	-	limb and CNS expressed 1 like	protein-coding
114964	chr19	14003301	14004300	+	0	NA	intron (NM_002918, intron 1 of 20)	intron (NM_002918, intron 1 of 20)	2520	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
45730	chr11	119109601	119110200	+	0	NA	intron (NM_001382611, intron 1 of 12)	intron (NM_001382611, intron 1 of 12)	2556	NM_014807	9854		NM_014807	ENSG00000172375	C2CD2L	DLNB23|TMEM24	C2CD2 like	protein-coding
10409	chr1	65253951	65255650	+	0	NA	Intergenic	CpG	-9894	NM_001256865	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
118492	chr19	35938671	35939480	+	0	NA	intron (NM_024509, intron 1 of 2)	AluJr|SINE|Alu	2701	NM_024509	79414		NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
158412	chr22	50531601	50533250	+	0	NA	promoter-TSS (NM_001382807)	promoter-TSS (NM_001382807)	73	NM_001014440	440836		NM_001014440	ENSG00000177989	CIMAP1B	FAP123|ODF3B|ODF3L3	ciliary microtubule associated protein 1B	protein-coding
220016	chr8	90627551	90628700	+	0	NA	intron (NM_001146273, intron 1 of 1)	intron (NM_001146273, intron 1 of 1)	17780	NM_001146273	169200		NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
59748	chr13	29960601	29960800	+	0	NA	Intergenic	Intergenic	24169	NR_033889	440131		NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
140247	chr2	231965271	231966000	+	0	NA	intron (NR_046477, intron 1 of 18)	L2a|LINE|L2	3922	NM_152383	129563		NM_152383	ENSG00000144535	DIS3L2	FAM6A|PRLMNS|hDIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein-coding
142025	chr20	1661451	1662550	+	0	NA	Intergenic	Intergenic	-4221	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
129596	chr2	70086041	70088780	+	0	NA	promoter-TSS (NR_033872)	promoter-TSS (NR_033872)	-67	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
121260	chr19	46690271	46690830	+	0	NA	intron (NM_001079881, intron 14 of 18)	L2b|LINE|L2	18804	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
8693	chr1	42053001	42053500	+	0	NA	Intergenic	Intergenic	-17316	NR_038261	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
116641	chr19	18314271	18315250	+	0	NA	intron (NM_001252129, intron 1 of 3)	L1MB5|LINE|L1	8316	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
191167	chr6	4914501	4915100	+	0	NA	intron (NM_001368126, intron 2 of 6)	intron (NM_001368126, intron 2 of 6)	24760	NM_001143971	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
67291	chr14	69400001	69400200	+	0	NA	intron (NM_018375, intron 1 of 6)	intron (NM_018375, intron 1 of 6)	1408	NM_001252150	55334		NM_018375	ENSG00000029364	SLC39A9	ZIP-9|ZIP9	solute carrier family 39 member 9	protein-coding
115220	chr19	14494821	14498380	+	0	NA	promoter-TSS (NM_005716)	promoter-TSS (NM_005716)	-451	NM_202494	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
101332	chr17	66725521	66725780	+	0	NA	intron (NM_002737, intron 8 of 16)	AluJb|SINE|Alu	-61422	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
58350	chr12	131603351	131603680	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	44606	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
2821	chr1	11032071	11032330	+	0	NA	intron (NM_006610, intron 8 of 10)	intron (NM_006610, intron 8 of 10)	15039	NM_139208	10747		NM_006610	ENSG00000009724	MASP2	MAP-2|MAP19|MASP-2|MASP1P1|sMAP	MBL associated serine protease 2	protein-coding
160865	chr3	33385221	33385600	+	0	NA	intron (NR_146130, intron 15 of 15)	intron (NR_146130, intron 15 of 15)	54968	NM_001128160	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
167902	chr3	136156521	136156900	+	0	NA	intron (NM_018133, intron 1 of 1)	AluY|SINE|Alu	37758	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
195945	chr6	41929871	41930230	+	0	NA	intron (NM_004053, intron 2 of 6)	intron (NM_004053, intron 2 of 6)	8551	NM_004053	705		NM_004053	ENSG00000112578	BYSL	BYSTIN|Enp1	bystin like	protein-coding
152246	chr22	20206151	20207950	+	0	NA	non-coding (NR_026919, exon 1 of 1)	non-coding (NR_026919, exon 1 of 1)	718	NR_026919	150197		NM_152508	ENSG00000236499	LINC00896	-	long intergenic non-protein coding RNA 896	ncRNA
36623	chr11	7442401	7442900	+	0	NA	intron (NR_103855, intron 4 of 4)	intron (NR_103855, intron 4 of 4)	23185	NR_103855	100506258		NR_103855	ENSG00000251364	SYT9-AS1	-	SYT9 antisense RNA 1	ncRNA
109323	chr19	589401	590000	+	0	NA	promoter-TSS (NM_001194)	promoter-TSS (NM_001194)	-181	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
126944	chr2	33498421	33498750	+	0	NA	intron (NM_001349980, intron 2 of 18)	intron (NM_001349980, intron 2 of 18)	-15290	NM_015376	25780		NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
124805	chr2	7516171	7516330	+	0	NA	Intergenic	Intergenic	94989	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
73575	chr15	44444821	44445080	+	0	NA	intron (NM_016396, intron 1 of 12)	AluY|SINE|Alu	17321	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
59302	chr13	24270451	24271300	+	0	NA	exon (NM_001286793, exon 1 of 9)	exon (NM_001286793, exon 1 of 9)	125	NM_001286793	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
11916	chr1	93438001	93438300	+	0	NA	Intergenic	Intergenic	-9968	NM_017737	54874		NM_017737	ENSG00000137942	FNBP1L	C1orf39|TOCA1	formin binding protein 1 like	protein-coding
162735	chr3	49034321	49034650	+	0	NA	intron (NM_001320580, intron 7 of 10)	AluJo|SINE|Alu	-5087	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
77616	chr15	85383421	85384200	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	3207	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
196090	chr6	42315401	42315800	+	0	NA	intron (NM_033502, intron 3 of 17)	intron (NM_033502, intron 3 of 17)	-97739	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
239249	chrY	13343601	13344030	+	0	NA	intron (NR_047600, intron 16 of 28)	HERV1_I-int|LTR|ERV1	-135362	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
59971	chr13	32031001	32031800	+	0	NA	promoter-TSS (NM_023037)	promoter-TSS (NM_023037)	239	NR_103839	100507099		NR_103839		FRY-AS1	-	FRY antisense RNA 1	ncRNA
167652	chr3	129627621	129628650	+	0	NA	Intergenic	L1MC4|LINE|L1	-21459	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
174765	chr4	47532651	47532750	+	0	NA	intron (NM_020453, intron 5 of 22)	intron (NM_020453, intron 5 of 22)	47425	NM_020453	57205		NM_020453	ENSG00000145246	ATP10D	ATPVD	ATPase phospholipid transporting 10D (putative)	protein-coding
109247	chr19	514851	515350	+	0	NA	intron (NM_033513, intron 1 of 1)	MER58A|DNA|hAT-Charlie	7603	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
85093	chr16	33336071	33337500	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-6444	NR_158162	105369266		NR_158162		LOC105369266	-	uncharacterized LOC105369266	ncRNA
190630	chr5	181205901	181207000	+	0	NA	Intergenic	Intergenic	-1254	NM_203293	81786		NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
68	chr1	281321	281600	+	0	NA	Intergenic	L3|LINE|CR1	-74863	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
129568	chr2	69931971	69932330	+	0	NA	intron (NM_002357, intron 3 of 5)	intron (NM_002357, intron 3 of 5)	17041	NM_001202513	4084		NM_002357	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
177561	chr4	119281821	119282280	+	0	NA	intron (NM_001371398, intron 16 of 16)	L1MB3|LINE|L1	18595	NM_001001701	401152		NM_001001701	ENSG00000164096	C4orf3	ALN|HCVFTP1	chromosome 4 open reading frame 3	protein-coding
135541	chr2	162327021	162327730	+	0	NA	intron (NM_001330266, intron 2 of 8)	HUERS-P2-int|LTR|ERV1	8393	NM_001330267	25801		NM_012198	ENSG00000115271	GCA	GCL	grancalcin	protein-coding
153975	chr22	30371821	30372950	+	0	NA	non-coding (NR_046312, exon 2 of 2)	non-coding (NR_046312, exon 2 of 2)	5520	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
126022	chr2	25338171	25338830	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	3425	NM_022552	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
38835	chr11	47317701	47317900	+	0	NA	intron (NR_164842, intron 29 of 33)	AluSx1|SINE|Alu	34902	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
174839	chr4	48431421	48432030	+	0	NA	Intergenic	L2a|LINE|L2	-51618	NM_152679	201780		NM_152679	ENSG00000145248	SLC10A4	P4	solute carrier family 10 member 4	protein-coding
41327	chr11	65909201	65910580	+	0	NA	Intergenic	AluSx|SINE|Alu	9172	NM_031450	83638		NM_031450	ENSG00000175573	C11orf68	BLES03|P5326	chromosome 11 open reading frame 68	protein-coding
162869	chr3	49366451	49367180	+	0	NA	intron (NM_001313947, intron 2 of 3)	intron (NM_001313947, intron 2 of 3)	-8215	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
39608	chr11	61361451	61362930	+	0	NA	promoter-TSS (NM_001330281)	promoter-TSS (NM_001330281)	93	NM_001161454	220002		NM_153611	ENSG00000162144	CYB561A3	CYBASC3|LCYTB	cytochrome b561 family member A3	protein-coding
122307	chr19	49117621	49117880	+	0	NA	TTS (NM_018111)	TTS (NM_018111)	1393	NM_018111	55150		NM_018111	ENSG00000221916	C19orf73	-	chromosome 19 open reading frame 73	protein-coding
106777	chr18	23827321	23827750	+	0	NA	intron (NM_198129, intron 23 of 74)	intron (NM_198129, intron 23 of 74)	-45485	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
207812	chr7	50308601	50309250	+	0	NA	intron (NM_001291837, intron 1 of 6)	intron (NM_001291837, intron 1 of 6)	225	NM_001291837	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
236779	chrX	79089471	79089630	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-55138	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
130421	chr2	85348451	85348950	+	0	NA	intron (NM_017750, intron 5 of 10)	A-rich|Low_complexity|Low_complexity	5828	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
94975	chr17	32264521	32265000	+	0	NA	Intergenic	Intergenic	-1072	NM_001330181	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
170337	chr3	184468501	184468700	+	0	NA	Intergenic	MIRb|SINE|MIR	67063	NR_161198	105374250		NR_161198	ENSG00000224153	LINC02054	-	long intergenic non-protein coding RNA 2054	ncRNA
103719	chr17	78835401	78835600	+	0	NA	exon (NM_001385169, exon 4 of 21)	exon (NM_001385169, exon 4 of 21)	5314	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
92418	chr17	8386371	8386530	+	0	NA	Intergenic	AluY|SINE|Alu	-3257	NM_000987	6154		NM_000987	ENSG00000161970	RPL26	DBA11|L26|uL24	ribosomal protein L26	protein-coding
217458	chr8	28708421	28708680	+	0	NA	intron (NR_073468, intron 1 of 4)	intron (NR_073468, intron 1 of 4)	7049	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
233717	chrX	1333921	1334430	+	0	NA	Intergenic	AluSx|SINE|Alu	-2441	NM_001267713	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
65633	chr14	52306501	52306700	+	0	NA	Intergenic	L2c|LINE|L2	-7712	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
34205	chr10	129104421	129104680	+	0	NA	Intergenic	Intergenic	191717	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
160739	chr3	32468951	32469250	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	33752	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
165467	chr3	98733771	98733930	+	0	NA	intron (NM_001323365, intron 1 of 10)	intron (NM_001323365, intron 1 of 10)	394	NM_001323366	10402		NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
7952	chr1	37561621	37562030	+	0	NA	intron (NM_003462, intron 4 of 5)	intron (NM_003462, intron 4 of 5)	4885	NM_003462	7802		NM_003462	ENSG00000163879	DNALI1	P28|SPGF83|dJ423B22.5|hp28	dynein axonemal light intermediate chain 1	protein-coding
109029	chr18	79729301	79730050	+	0	NA	intron (NM_001318511, intron 11 of 11)	intron (NM_001318511, intron 11 of 11)	48245	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
57819	chr12	123153651	123154000	+	0	NA	TTS (NM_022782)	TTS (NM_022782)	-2735	NM_001384661	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
4413	chr1	21217921	21218880	+	0	NA	3' UTR (NM_001113349, exon 18 of 18)	3' UTR (NM_001113349, exon 18 of 18)	-41503	NM_001198802	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
239027	chrY	3005351	3005600	+	0	NA	intron (NR_046502, intron 1 of 3)	HERV3-int|LTR|ERV1	2479	NR_046502	100873962		NR_046502	ENSG00000231535	LINC00278	NCRNA00278|YY1BM	long intergenic non-protein coding RNA 278	ncRNA
110473	chr19	2019221	2020430	+	0	NA	Intergenic	Intergenic	-4111	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
33114	chr10	111360451	111360550	+	0	NA	Intergenic	Intergenic	246209	NR_159949	113633881		NR_159949		HEAT2	lnc-ADRA2A-1:1	HEart disease Associated Transcript 2	ncRNA
55370	chr12	104292201	104292400	+	0	NA	intron (NM_001261446, intron 2 of 13)	MER5A|DNA|hAT-Charlie	5268	NM_182743	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
226929	chr9	79595771	79596150	+	0	NA	intron (NM_001351556, intron 4 of 18)	AluY|SINE|Alu	22783	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
76588	chr15	75352201	75352550	+	0	NA	exon (NM_001352519, exon 5 of 6)	exon (NM_001352519, exon 5 of 6)	1310	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
166394	chr3	113535801	113536380	+	0	NA	intron (NM_001322297, intron 1 of 24)	intron (NM_001322297, intron 1 of 24)	3535	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
233689	chrX	1180271	1180430	+	0	NA	Intergenic	AluSx|SINE|Alu	32299	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
138934	chr2	218233771	218233930	+	0	NA	intron (NM_152862, intron 4 of 10)	intron (NM_152862, intron 4 of 10)	16453	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
103687	chr17	78805101	78805850	+	0	NA	intron (NR_169585, intron 15 of 19)	intron (NR_169585, intron 15 of 19)	-23133	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
219846	chr8	81870371	81871050	+	0	NA	Intergenic	Intergenic	-28424	NM_022133	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
139224	chr2	219294451	219295500	+	0	NA	promoter-TSS (NR_029688)	promoter-TSS (NR_029688)	-775	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
178266	chr4	143701251	143701550	+	0	NA	promoter-TSS (NM_001168235)	promoter-TSS (NM_001168235)	-725	NM_001168235	166752		NM_001168235	ENSG00000183090	FREM3	-	FRAS1 related extracellular matrix 3	protein-coding
201933	chr6	151448751	151449050	+	0	NA	intron (NM_017909, intron 1 of 11)	AluSz6|SINE|Alu	3226	NM_017909	55005		NM_017909	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog	protein-coding
208232	chr7	65379171	65379330	+	0	NA	intron (NM_001287534, intron 1 of 1)	MER21C|LTR|ERVL	5395	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
222231	chr8	133093851	133094650	+	0	NA	intron (NM_001045556, intron 1 of 8)	AluY|SINE|Alu	8352	NM_001282964	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
189159	chr5	171392051	171393480	+	0	NA	exon (NM_001355006, exon 6 of 12)	exon (NM_001355006, exon 6 of 12)	4916	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
68374	chr14	77762651	77763250	+	0	NA	intron (NR_161324, intron 1 of 1)	AluSp|SINE|Alu	-1794	NM_012245	22938		NM_012245	ENSG00000100603	SNW1	Bx42|FUN20|NCOA-62|PRPF45|Prp45|SKIIP|SKIP|SKIP1	SNW domain containing 1	protein-coding
96421	chr17	40174321	40175180	+	0	NA	Intergenic	Intergenic	-2260	NM_001303534	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
209922	chr7	92461521	92461880	+	0	NA	Intergenic	Intergenic	9724	NM_014590	30816		NM_014590	ENSG00000242950	ERVW-1	ENV|ENVW|ERVWE1|HERV-7q|HERV-W-ENV|HERV7Q|HERVW|HERVWENV	endogenous retrovirus group W member 1, envelope	protein-coding
90075	chr16	90011971	90012480	+	0	NA	intron (NM_001288708, intron 1 of 4)	intron (NM_001288708, intron 1 of 4)	-2104	NM_024043	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
54193	chr12	79846551	79846650	+	0	NA	intron (NM_001143885, intron 3 of 25)	AluYc|SINE|Alu	67311	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
157126	chr22	42665421	42665680	+	0	NA	Intergenic	Intergenic	-16158	NM_000398	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
233560	chrX	277971	278330	+	0	NA	intron (NM_001370371, intron 1 of 6)	intron (NM_001370371, intron 1 of 6)	1794	NM_001370371	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228360	chr9	99059221	99060050	+	0	NA	intron (NM_001855, intron 35 of 41)	MLT1K|LTR|ERVL-MaLR	-45478	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
60648	chr13	42478651	42478830	+	0	NA	intron (NR_135319, intron 3 of 3)	L2b|LINE|L2	53848	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
69557	chr14	96738051	96738230	+	0	NA	Intergenic	Intergenic	-3051	NR_146552	105370646		NR_146552	ENSG00000258979	LINC02299	-	long intergenic non-protein coding RNA 2299	ncRNA
40759	chr11	64846601	64847670	+	0	NA	Intergenic	Intergenic	-2482	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
76312	chr15	74378901	74379500	+	0	NA	intron (NR_146881, intron 1 of 3)	intron (NR_146881, intron 1 of 3)	118	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
140029	chr2	231068351	231068850	+	0	NA	intron (NM_002807, intron 5 of 24)	Tigger7|DNA|TcMar-Tigger	11733	NM_002807	5707		NM_002807	ENSG00000173692	PSMD1	P112|Rpn2|S1	proteasome 26S subunit, non-ATPase 1	protein-coding
48230	chr12	8234071	8234430	+	0	NA	intron (NR_024254, intron 4 of 4)	intron (NR_024254, intron 4 of 4)	-1165	NR_120455	101927905		NR_120454	ENSG00000215241	LINC02449	-	long intergenic non-protein coding RNA 2449	ncRNA
44461	chr11	104965201	104965400	+	0	NA	intron (NM_033306, intron 1 of 9)	HUERS-P1-int|LTR|ERV1	3274	NM_001225	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
75855	chr15	69594651	69594750	+	0	NA	intron (NR_126438, intron 1 of 3)	intron (NR_126438, intron 1 of 3)	2500	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
188541	chr5	156402251	156402860	+	0	NA	intron (NM_000337, intron 3 of 8)	LTR43|LTR|ERV1	75391	NM_172244	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
239276	chrY	13729651	13729750	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	25801	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
178784	chr4	153473021	153473830	+	0	NA	intron (NM_015196, intron 2 of 34)	intron (NM_015196, intron 2 of 34)	7065	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
49404	chr12	22545571	22545730	+	0	NA	Intergenic	AluJo|SINE|Alu	-1104	NM_001286173	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
144021	chr20	33446471	33447080	+	0	NA	Intergenic	Intergenic	-3012	NM_003098	6640		NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	syntrophin alpha 1	protein-coding
161383	chr3	41190371	41190880	+	0	NA	Intergenic	Intergenic	-8880	NM_001330729	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
152279	chr22	20296571	20297480	+	0	NA	Intergenic	Intergenic	23035	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
83647	chr16	28307801	28308300	+	0	NA	intron (NM_001024401, intron 1 of 3)	L3|LINE|CR1	15525	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
79966	chr16	1778521	1779150	+	0	NA	intron (NM_080861, intron 2 of 6)	intron (NM_080861, intron 2 of 6)	2987	NM_001324081	90864		NM_080861	ENSG00000162032	SPSB3	C16orf31|SSB3	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding
33535	chr10	119265551	119266430	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	58419	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
9782	chr1	53550571	53550730	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	91251	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
60426	chr13	40988771	40989000	+	0	NA	intron (NM_001370329, intron 1 of 9)	AluSz|SINE|Alu	-5986	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
44800	chr11	113764801	113765000	+	0	NA	intron (NM_004724, intron 2 of 15)	L2c|LINE|L2	8792	NM_004724	9183		NM_004724	ENSG00000086827	ZW10	HZW10|KNTC1AP	zw10 kinetochore protein	protein-coding
171714	chr3	197908671	197908830	+	0	NA	intron (NM_032263, intron 9 of 11)	intron (NM_032263, intron 9 of 11)	41175	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
98284	chr17	46220051	46220480	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluY|SINE|Alu	5102	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
40279	chr11	63842351	63842650	+	0	NA	intron (NM_004954, intron 1 of 16)	AluSc|SINE|Alu	3390	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
154020	chr22	30437321	30437730	+	0	NA	Intergenic	MER4A|LTR|ERV1	4839	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
191239	chr6	5849651	5849950	+	0	NA	Intergenic	MIRb|SINE|MIR	154244	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
30691	chr10	80525271	80525430	+	0	NA	Intergenic	AluSq2|SINE|Alu	10592	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
32059	chr10	101067551	101068600	+	0	NA	TTS (NM_001319303)	TTS (NM_001319303)	1692	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
168313	chr3	141576221	141576730	+	0	NA	intron (NM_006506, intron 14 of 23)	intron (NM_006506, intron 14 of 23)	-86724	NR_136190	646730		NR_136190		LINC02618	-	long intergenic non-protein coding RNA 2618	ncRNA
122665	chr19	49872471	49872630	+	0	NA	intron (NM_001278160, intron 2 of 4)	intron (NM_001278160, intron 2 of 4)	3699	NM_001278159	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
88455	chr16	84983251	84983350	+	0	NA	intron (NM_017740, intron 3 of 7)	intron (NM_017740, intron 3 of 7)	28235	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
45828	chr11	119366551	119367050	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	-2592	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
163251	chr3	50280421	50280780	+	0	NA	intron (NM_153215, intron 1 of 3)	AluY|SINE|Alu	1513	NM_001304385	132228		NM_153215	ENSG00000179564	LSMEM2	C3orf45	leucine rich single-pass membrane protein 2	protein-coding
43384	chr11	77066201	77067900	+	0	NA	promoter-TSS (NM_004055)	promoter-TSS (NM_004055)	79	NM_004055	726		NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
204427	chr7	3116001	3116200	+	0	NA	Intergenic	Intergenic	42473	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
134429	chr2	143128421	143129650	+	0	NA	promoter-TSS (NM_018460)	promoter-TSS (NM_018460)	-384	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
118985	chr19	38880171	38881100	+	0	NA	intron (NR_034146, intron 11 of 13)	intron (NR_034146, intron 11 of 13)	-2360	NM_001195833	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
88937	chr16	87834221	87834730	+	0	NA	TTS (NR_106833)	TTS (NR_106833)	185	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
112854	chr19	7548871	7549230	+	0	NA	intron (NM_006702, intron 16 of 34)	AluY|SINE|Alu	13333	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
108802	chr18	78512951	78513380	+	0	NA	Intergenic	Intergenic	-467110	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
122801	chr19	50363951	50364800	+	0	NA	intron (NM_004851, intron 1 of 8)	AluY|SINE|Alu	1264	NM_004851	9476		NM_004851	ENSG00000131400	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
10521	chr1	66936571	66937650	+	0	NA	intron (NM_001077704, intron 1 of 13)	intron (NM_001077704, intron 1 of 13)	6854	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
175608	chr4	75915771	75916400	+	0	NA	TTS (NM_001363719)	TTS (NM_001363719)	-13633	NM_006239	5470		NM_006239	ENSG00000156194	PPEF2	PPP7CB	protein phosphatase with EF-hand domain 2	protein-coding
187246	chr5	141397851	141398230	+	0	NA	promoter-TSS (NM_018925)	promoter-TSS (NM_018925)	-88	NM_032099	56101		NM_018925	ENSG00000276547	PCDHGB5	PCDH-GAMMA-B5	protocadherin gamma subfamily B, 5	protein-coding
172761	chr4	2871751	2872250	+	0	NA	intron (NM_001286645, intron 2 of 17)	L2c|LINE|L2	27850	NM_001354758	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
178683	chr4	152525601	152526030	+	0	NA	intron (NM_001349798, intron 2 of 13)	L1PA14|LINE|L1	9218	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
164731	chr3	69009071	69009730	+	0	NA	intron (NM_173654, intron 4 of 14)	intron (NM_173654, intron 4 of 14)	4284	NR_103826	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
26217	chr10	14574851	14574950	+	0	NA	intron (NM_001282695, intron 2 of 5)	MIRb|SINE|MIR	-2525	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
185934	chr5	132930971	132931130	+	0	NA	intron (NM_014423, intron 4 of 20)	AluSx1|SINE|Alu	32584	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
197889	chr6	89298711	89299450	+	0	NA	intron (NM_002043, intron 2 of 8)	MLT1A0|LTR|ERVL-MaLR	16219	NM_002043	2570		NM_002043	ENSG00000111886	GABRR2	-	gamma-aminobutyric acid type A receptor subunit rho2	protein-coding
92850	chr17	16285451	16286780	+	0	NA	intron (NM_004278, intron 2 of 6)	intron (NM_004278, intron 2 of 6)	4101	NR_031698	100302124		NR_031698	ENSG00000221355	MIR1288	MIRN1288|hsa-mir-1288	microRNA 1288	ncRNA
93330	chr17	18191371	18192730	+	0	NA	intron (NM_017758, intron 1 of 3)	intron (NM_017758, intron 1 of 3)	8222	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
2571	chr1	9792351	9792650	+	0	NA	intron (NM_014944, intron 1 of 17)	intron (NM_014944, intron 1 of 17)	31465	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
111915	chr19	4707671	4707830	+	0	NA	intron (NR_158699, intron 4 of 22)	AluSx1|SINE|Alu	12602	NM_001384611	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
151995	chr22	19176651	19177250	+	0	NA	exon (NM_001287387, exon 6 of 9)	exon (NM_001287387, exon 6 of 9)	1555	NM_001287387	6576		NM_005984	ENSG00000100075	SLC25A1	CIC|CMS23|CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
228736	chr9	109469671	109469870	+	0	NA	intron (NM_002829, intron 1 of 25)	intron (NM_002829, intron 1 of 25)	-18386	NM_001145370	5774		NM_002829	ENSG00000070159	PTPN3	PTP-H1|PTPH1	protein tyrosine phosphatase non-receptor type 3	protein-coding
45121	chr11	117177651	117177750	+	0	NA	TTS (NM_001184748)	TTS (NM_001184748)	-1043	NM_001040455	51092		NM_015996	ENSG00000149577	SIDT2	CGI-40	SID1 transmembrane family member 2	protein-coding
170516	chr3	186521351	186521680	+	0	NA	Intergenic	Intergenic	22865	NM_017541	1427		NM_017541	ENSG00000213139	CRYGS	CRYG8|CTRCT20	crystallin gamma S	protein-coding
41129	chr11	65571971	65573000	+	0	NA	promoter-TSS (NM_001098785)	promoter-TSS (NM_001098785)	-53	NM_152832	23625		NM_152832	ENSG00000176973	FAM89B	LRAP25|MTVR|MTVR1	family with sequence similarity 89 member B	protein-coding
172490	chr4	2243821	2244500	+	0	NA	Intergenic	Intergenic	-2039	NM_024511	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
175958	chr4	81153821	81154580	+	0	NA	promoter-TSS (NM_001282483)	promoter-TSS (NM_001282483)	-43	NM_001282482	5593		NM_006259	ENSG00000138669	PRKG2	AMD4|PKG2|PRKGR2|SMDP|cGK2|cGKII	protein kinase cGMP-dependent 2	protein-coding
114132	chr19	11209751	11210650	+	0	NA	intron (NM_020812, intron 37 of 47)	intron (NM_020812, intron 37 of 47)	6572	NR_134909	105372273		NR_134909	ENSG00000267082	DOCK6-AS1	-	DOCK6 antisense RNA 1	ncRNA
17585	chr1	156851751	156852050	+	0	NA	exon (NM_014215, exon 3 of 22)	exon (NM_014215, exon 3 of 22)	7217	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
143947	chr20	32791971	32792560	+	0	NA	intron (NM_175849, intron 8 of 19)	intron (NM_175849, intron 8 of 19)	12413	NM_175850	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
171613	chr3	197436301	197436500	+	0	NA	Intergenic	Intergenic	73261	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
82688	chr16	20674271	20674830	+	0	NA	intron (NR_134918, intron 3 of 10)	LTR15|LTR|ERV1	16706	NR_134918	116285		NM_052956	ENSG00000166743	ACSM1	BUCS1|MACS1	acyl-CoA synthetase medium chain family member 1	protein-coding
170831	chr3	190169701	190170250	+	0	NA	Intergenic	L1M3|LINE|L1	-47538	NM_001134418	55214		NM_018192	ENSG00000090530	P3H2	LEPREL1|MCVD|MLAT4	prolyl 3-hydroxylase 2	protein-coding
12237	chr1	100423671	100424330	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	71494	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
102056	chr17	74877721	74878180	+	0	NA	3' UTR (NM_178128, exon 6 of 6)	3' UTR (NM_178128, exon 6 of 6)	-4956	NM_001258013	2232		NM_004110	ENSG00000161513	FDXR	ADR|ADXR|ANOA	ferredoxin reductase	protein-coding
37248	chr11	14626871	14627030	+	0	NA	intron (NM_148976, intron 1 of 10)	MLT1B|LTR|ERVL-MaLR	16684	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
25543	chr10	7409011	7410000	+	0	NA	promoter-TSS (NM_001018039)	promoter-TSS (NM_001018039)	-164	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
96509	chr17	40321901	40323500	+	0	NA	intron (NM_001145301, intron 1 of 8)	intron (NM_001145301, intron 1 of 8)	4455	NM_001145302	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
185078	chr5	117305571	117305830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-109812	NR_046089	728342		NR_046089		LINC00992	ERINA	long intergenic non-protein coding RNA 992	ncRNA
138162	chr2	202588651	202589430	+	0	NA	Intergenic	L1PA17|LINE|L1	-45929	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
146662	chr20	50471101	50471500	+	0	NA	Intergenic	L1ME4b|LINE|L1	-39021	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
135325	chr2	160356271	160356430	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	51532	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
18639	chr1	166874601	166874800	+	0	NA	intron (NM_053053, intron 1 of 7)	AluJr|SINE|Alu	1564	NM_053053	117143		NM_053053	ENSG00000152382	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
159057	chr3	11642281	11643300	+	0	NA	intron (NM_014667, intron 2 of 5)	CpG	1125	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
167535	chr3	129311801	129312750	+	0	NA	Intergenic	Intergenic	-3996	NR_026991	339942		NM_001025468		H1-10-AS1	C3orf47|H1FX-AS1	H1-10 antisense RNA 1	ncRNA
219879	chr8	85501251	85501550	+	0	NA	Intergenic	Intergenic	-36485	NR_121630	100996348		NR_121630		CA3-AS1	-	CA3 antisense RNA 1	ncRNA
10670	chr1	71049921	71050290	+	0	NA	intron (NR_038420, intron 2 of 2)	intron (NR_038420, intron 2 of 2)	-2289	NM_001126044	5733		NM_000957	ENSG00000050628	PTGER3	EP3|EP3-I|EP3-II|EP3-III|EP3-IV|EP3-VI|EP3e|PGE2-R|lnc003875	prostaglandin E receptor 3	protein-coding
90493	chr17	1441371	1441730	+	0	NA	intron (NM_016823, intron 1 of 2)	AluSg|SINE|Alu	14682	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
164609	chr3	66305321	66305680	+	0	NA	intron (NR_028475, intron 5 of 9)	L1PA10|LINE|L1	84497	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
13949	chr1	120349071	120349430	+	0	NA	Intergenic	PRIMA4-int|LTR|ERV1	-65777	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
137650	chr2	197424171	197424700	+	0	NA	intron (NM_001005526, intron 1 of 4)	AluSz|SINE|Alu	10593	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
88306	chr16	84144321	84145830	+	0	NA	promoter-TSS (NM_178452)	promoter-TSS (NM_178452)	102	NM_031463	83693		NM_031463	ENSG00000103160	HSDL1	SDR12C3	hydroxysteroid dehydrogenase like 1	protein-coding
161089	chr3	38138001	38139730	+	0	NA	promoter-TSS (NM_001374788)	promoter-TSS (NM_001374788)	204	NM_002468	4615		NM_002468	ENSG00000172936	MYD88	IMD68|MYD88D|WM1	MYD88 innate immune signal transduction adaptor	protein-coding
85323	chr16	50027321	50027880	+	0	NA	intron (NR_104043, intron 2 of 4)	AluJo|SINE|Alu	2394	NM_153261	255919		NM_153261	ENSG00000205423	CNEP1R1	C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding
224235	chr9	5832201	5834130	+	0	NA	promoter-TSS (NM_024896)	promoter-TSS (NM_024896)	-48	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
221183	chr8	120706271	120707050	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-54593	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
237156	chrX	107454121	107454650	+	0	NA	Intergenic	L2a|LINE|L2	-68065	NM_032428	84443		NM_032428	ENSG00000147234	FRMPD3	-	FERM and PDZ domain containing 3	protein-coding
20538	chr1	198696421	198697030	+	0	NA	exon (NM_002838, exon 4 of 33)	exon (NM_002838, exon 4 of 33)	57685	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
19754	chr1	181448521	181448780	+	0	NA	Intergenic	Intergenic	-34867	NM_001205293	777		NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|DEE69|EIEE69|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
85475	chr16	50692551	50692650	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1006	NR_163434	64127		NM_022162	ENSG00000167207	NOD2	ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS	nucleotide binding oligomerization domain containing 2	protein-coding
148740	chr21	7479801	7480100	+	0	NA	Intergenic	Intergenic	33746	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
41097	chr11	65533451	65534030	+	0	NA	intron (NM_020680, intron 9 of 17)	AluJb|SINE|Alu	8657	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
223755	chr8	144515651	144516030	+	0	NA	exon (NM_004260, exon 6 of 21)	exon (NM_004260, exon 6 of 21)	1993	NM_004260	9401		NM_004260	ENSG00000160957	RECQL4	RECQ4	RecQ like helicase 4	protein-coding
52530	chr12	56113601	56114000	+	0	NA	3' UTR (NM_006191, exon 13 of 13)	3' UTR (NM_006191, exon 13 of 13)	-2833	NM_001035267	6171		NM_021104	ENSG00000229117	RPL41	L41|eL41	ribosomal protein L41	protein-coding
227061	chr9	84140371	84140950	+	0	NA	Intergenic	CpG	77217	NR_110995	101927575		NR_110995	ENSG00000227463	LOC101927575	-	uncharacterized LOC101927575	ncRNA
182126	chr5	56107851	56108150	+	0	NA	intron (NM_024669, intron 10 of 11)	AluJb|SINE|Alu	112833	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
150275	chr21	41816501	41817180	+	0	NA	intron (NR_104258, intron 18 of 23)	intron (NR_104258, intron 18 of 23)	46462	NR_104260	63977		NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
120580	chr19	45000271	45000430	+	0	NA	Intergenic	Intergenic	-1114	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
97701	chr17	44322551	44322980	+	0	NA	intron (NM_001143780, intron 4 of 11)	intron (NM_001143780, intron 4 of 11)	2058	NR_159404	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
236746	chrX	78322921	78323180	+	0	NA	intron (NM_001282188, intron 1 of 3)	intron (NM_001282188, intron 1 of 3)	4561	NM_001282188	10800		NM_006639	ENSG00000173198	CYSLTR1	CYSLT1|CYSLT1R|CYSLTR|HMTMF81	cysteinyl leukotriene receptor 1	protein-coding
210557	chr7	100342051	100342150	+	0	NA	TTS (NR_103720)	TTS (NR_103720)	-5793	NR_003613	5379		NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
228113	chr9	96607471	96607630	+	0	NA	intron (NR_147239, intron 1 of 14)	AluY|SINE|Alu	12293	NM_003671	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
168019	chr3	136882451	136883230	+	0	NA	intron (NM_001291999, intron 1 of 3)	MLT1J2|LTR|ERVL-MaLR	20632	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
137900	chr2	200860101	200860580	+	0	NA	non-coding (NR_027856, exon 3 of 11)	non-coding (NR_027856, exon 3 of 11)	4221	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
164959	chr3	71267851	71268150	+	0	NA	intron (NM_001012505, intron 5 of 6)	AluSx1|SINE|Alu	-21758	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
158741	chr3	9067551	9067650	+	0	NA	intron (NM_014850, intron 4 of 21)	intron (NM_014850, intron 4 of 21)	-104128	NM_020165	56852		NM_020165	ENSG00000070950	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
24110	chr1	235587321	235587780	+	0	NA	intron (NM_004485, intron 1 of 2)	(TG)n|Simple_repeat|Simple_repeat	62234	NM_001098722	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
78875	chr15	100593851	100594150	+	0	NA	intron (NR_148017, intron 1 of 6)	MER2|DNA|TcMar-Tigger	8184	NR_148018	55180		NM_018148	ENSG00000140471	LINS1	LINS|MRT27|WINS1	lines homolog 1	protein-coding
234444	chrX	16946071	16947330	+	0	NA	promoter-TSS (NM_004726)	promoter-TSS (NM_004726)	42	NM_001080975	9185		NM_004726	ENSG00000169891	REPS2	POB1	RALBP1 associated Eps domain containing 2	protein-coding
57443	chr12	121902871	121903030	+	0	NA	intron (NM_002813, intron 3 of 5)	intron (NM_002813, intron 3 of 5)	14160	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
194700	chr6	33698401	33698600	+	0	NA	TTS (NR_037498)	TTS (NR_037498)	372	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
120669	chr19	45098551	45099050	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	5621	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
213863	chr7	142312471	142312730	+	0	NA	Intergenic	Intergenic	-40351	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
209450	chr7	76443721	76444380	+	0	NA	Intergenic	Intergenic	-17605	NM_020892	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
20769	chr1	201010501	201011080	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	12924	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
56246	chr12	111993271	111994260	+	0	NA	intron (NM_138341, intron 2 of 9)	intron (NM_138341, intron 2 of 9)	19400	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
76043	chr15	72230801	72231900	+	0	NA	promoter-TSS (NM_001206796)	promoter-TSS (NM_001206796)	-160	NM_001206796	5315		NM_002654	ENSG00000067225	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1|p58	pyruvate kinase M1/2	protein-coding
1408	chr1	2558721	2560400	+	0	NA	intron (NM_001297605, intron 3 of 6)	intron (NM_001297605, intron 3 of 6)	-2549	NR_037844	115110		NR_026927		TNFRSF14-AS1	-	TNFRSF14 antisense RNA 1	ncRNA
226467	chr9	71738451	71738750	+	0	NA	intron (NM_013390, intron 5 of 23)	AluSg7|SINE|Alu	29913	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
66247	chr14	61350321	61351980	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	29707	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
134355	chr2	136135961	136137630	+	0	NA	Intergenic	Intergenic	-18646	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
238848	chrX	154473121	154473380	+	0	NA	3' UTR (NM_017514, exon 33 of 33)	3' UTR (NM_017514, exon 33 of 33)	6007	NM_006014	8270		NM_006014	ENSG00000196976	LAGE3	CVG5|DXS9879E|DXS9951E|ESO3|GAMOS2|ITBA2|Pcc1	L antigen family member 3	protein-coding
23894	chr1	234964321	234964750	+	0	NA	promoter-TSS (NR_125945)	promoter-TSS (NR_125945)	-536	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
109874	chr19	1245971	1246200	+	0	NA	Intergenic	Intergenic	-2468	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
210682	chr7	100561751	100562450	+	0	NA	intron (NM_006076, intron 6 of 11)	intron (NM_006076, intron 6 of 11)	11800	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
47837	chr12	6602971	6603950	+	0	NA	intron (NM_001273, intron 2 of 39)	intron (NM_001273, intron 2 of 39)	2991	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
73734	chr15	45189651	45189950	+	0	NA	intron (NM_138356, intron 2 of 7)	intron (NM_138356, intron 2 of 7)	-1834	NM_001301168	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
77536	chr15	84728501	84728900	+	0	NA	Intergenic	MLT2A2|LTR|ERVL	-12240	NM_001271920	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
207662	chr7	45085401	45086030	+	0	NA	exon (NM_001146334, exon 2 of 8)	exon (NM_001146334, exon 2 of 8)	3254	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
192710	chr6	26326401	26326930	+	0	NA	Intergenic	Intergenic	-38494	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
70341	chr14	101850571	101850800	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	40822	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
227783	chr9	93128051	93128730	+	0	NA	intron (NM_004148, intron 1 of 3)	MIR1_Amn|SINE|MIR	5861	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
231756	chr9	132228221	132228680	+	0	NA	intron (NM_032536, intron 4 of 7)	intron (NM_032536, intron 4 of 7)	66392	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
52041	chr12	54008401	54009800	+	0	NA	5' UTR (NM_022658, exon 1 of 2)	5' UTR (NM_022658, exon 1 of 2)	115	NM_022658	3224		NM_022658	ENSG00000037965	HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
162619	chr3	48711821	48712850	+	0	NA	intron (NM_016291, intron 1 of 5)	AluYh3|SINE|Alu	4886	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
177636	chr4	121199521	121200750	+	0	NA	intron (NM_001128843, intron 2 of 12)	intron (NM_001128843, intron 2 of 12)	16492	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
139462	chr2	223941501	223942350	+	0	NA	intron (NM_020830, intron 1 of 11)	intron (NM_020830, intron 1 of 11)	3410	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
200855	chr6	138514601	138515300	+	0	NA	intron (NM_020464, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	-15456	NM_001144060	57224		NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
6574	chr1	28747921	28748600	+	0	NA	intron (NM_016258, intron 4 of 4)	intron (NM_016258, intron 4 of 4)	11320	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
58885	chr13	18628251	18628800	+	0	NA	Intergenic	CpG	111574	NR_047508	100874164		NR_047508		LINC00417	-	long intergenic non-protein coding RNA 417	ncRNA
24770	chr1	248851951	248852630	+	0	NA	intron (NM_017865, intron 10 of 11)	L2a|LINE|L2	6795	NM_001350073	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
208150	chr7	64564121	64564550	+	0	NA	Intergenic	Intergenic	-1208	NM_001130022	340252		NM_178558	ENSG00000173041	ZNF680	-	zinc finger protein 680	protein-coding
94329	chr17	28790701	28791100	+	0	NA	intron (NM_001288635, intron 1 of 3)	AluY|SINE|Alu	21571	NM_001288634	55731		NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding
1098	chr1	2028851	2029150	+	0	NA	intron (NM_000815, intron 6 of 8)	intron (NM_000815, intron 6 of 8)	9655	NM_000815	2563		NM_000815	ENSG00000187730	GABRD	EIG10|EJM7|GABAARdelta|GEFSP5	gamma-aminobutyric acid type A receptor subunit delta	protein-coding
227684	chr9	93000801	93002100	+	0	NA	intron (NM_001369951, intron 3 of 17)	intron (NM_001369951, intron 3 of 17)	13494	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
104178	chr17	80422201	80422950	+	0	NA	intron (NM_001164638, intron 3 of 7)	intron (NM_001164638, intron 3 of 7)	3157	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
192567	chr6	25580121	25580400	+	0	NA	intron (NM_001173977, intron 29 of 36)	intron (NM_001173977, intron 29 of 36)	-71955	NM_006998	10590		NM_006998	ENSG00000079689	SCGN	CALBL|DJ501N12.8|SECRET|SEGN|setagin	secretagogin, EF-hand calcium binding protein	protein-coding
108656	chr18	76723521	76724250	+	0	NA	Intergenic	Intergenic	33856	NR_122073	400661		NR_122073	ENSG00000276397	LINC01879	-	long intergenic non-protein coding RNA 1879	ncRNA
172389	chr4	1767051	1768550	+	0	NA	Intergenic	Intergenic	-25493	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
85572	chr16	53465671	53466180	+	0	NA	intron (NM_001323609, intron 13 of 20)	LTR57|LTR|ERVL	30306	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
214447	chr7	150052051	150052350	+	0	NA	intron (NM_001351028, intron 6 of 9)	intron (NM_001351028, intron 6 of 9)	-4485	NR_147022	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
62622	chr13	100620001	100620230	+	0	NA	intron (NR_146794, intron 14 of 18)	intron (NR_146794, intron 14 of 18)	-31323	NM_001195087	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
191494	chr6	11226971	11227130	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	5618	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
140874	chr2	237556901	237557300	+	0	NA	Intergenic	(CTCT)n|Simple_repeat|Simple_repeat	-9474	NM_015893	51052		NM_015893	ENSG00000071677	PRLH	PRH|PRRP	prolactin releasing hormone	protein-coding
113366	chr19	8749001	8750280	+	0	NA	Intergenic	L1MD|LINE|L1	18686	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
162787	chr3	49096821	49097730	+	0	NA	intron (NM_001272073, intron 23 of 23)	AluJr4|SINE|Alu	2639	NR_106950	102465536		NR_106950	ENSG00000284488	MIR6890	hsa-mir-6890	microRNA 6890	ncRNA
229413	chr9	121213051	121213550	+	0	NA	intron (NM_001353053, intron 5 of 25)	intron (NM_001353053, intron 5 of 25)	-11431	NM_016322	51552		NM_016322	ENSG00000119396	RAB14	FBP|RAB-14	RAB14, member RAS oncogene family	protein-coding
2815	chr1	11023721	11023980	+	0	NA	3' UTR (NM_007375, exon 6 of 6)	3' UTR (NM_007375, exon 6 of 6)	11196	NM_007375	23435		NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding
46167	chr11	123083601	123084100	+	0	NA	intron (NM_024769, intron 3 of 6)	intron (NM_024769, intron 3 of 6)	-21714	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
199308	chr6	112088721	112089430	+	0	NA	intron (NM_001033564, intron 1 of 3)	intron (NM_001033564, intron 1 of 3)	1484	NM_001033564	619208		NM_001033564	ENSG00000203778	FAM229B	C6orf225	family with sequence similarity 229 member B	protein-coding
230554	chr9	128420121	128421630	+	0	NA	promoter-TSS (NM_016174)	promoter-TSS (NM_016174)	18	NM_016174	51148		NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
133131	chr2	112664701	112665230	+	0	NA	Intergenic	Intergenic	19026	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
179899	chr5	677051	677480	+	0	NA	intron (NM_007030, intron 2 of 3)	intron (NM_007030, intron 2 of 3)	16087	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
200961	chr6	139230551	139230650	+	0	NA	Intergenic	Intergenic	61398	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
97659	chr17	44207451	44207730	+	0	NA	TTS (NR_106840)	TTS (NR_106840)	249	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
217981	chr8	38371801	38372200	+	0	NA	intron (NM_017778, intron 1 of 9)	intron (NM_017778, intron 1 of 9)	10271	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
194263	chr6	32586951	32587050	+	0	NA	intron (NM_002124, intron 1 of 5)	L2a|LINE|L2	2836	NM_002124	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
108906	chr18	79429971	79430400	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	29886	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
47014	chr12	327551	327980	+	0	NA	intron (NM_001042603, intron 14 of 27)	AluJr|SINE|Alu	61555	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
278	chr1	935101	935300	+	0	NA	intron (NM_001385641, intron 4 of 13)	intron (NM_001385641, intron 4 of 13)	9469	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
225394	chr9	35043801	35044230	+	0	NA	exon (NM_001040412, exon 3 of 3)	exon (NM_001040412, exon 3 of 3)	1775	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
13819	chr1	117617821	117618400	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	12062	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
139575	chr2	224945471	224946180	+	0	NA	intron (NM_014689, intron 1 of 55)	MER20|DNA|hAT-Charlie	1224	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
14669	chr1	145816071	145816230	+	0	NA	intron (NM_014455, intron 1 of 8)	AluSq2|SINE|Alu	7945	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
186362	chr5	134876151	134876250	+	0	NA	intron (NM_024715, intron 1 of 4)	LTR33|LTR|ERVL	1829	NM_024715	79770		NM_024715	ENSG00000113621	TXNDC15	BUG|C5orf14|MKS14|UNQ335	thioredoxin domain containing 15	protein-coding
165929	chr3	107433651	107433950	+	0	NA	intron (NR_110039, intron 1 of 2)	AluJb|SINE|Alu	2870	NR_110039	101929607		NR_110039	ENSG00000273125	LINC01990	-	long intergenic non-protein coding RNA 1990	ncRNA
14003	chr1	120700571	120701330	+	0	NA	Intergenic	CpG	-22989	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
33432	chr10	118783771	118783930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-28880	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
145051	chr20	38427251	38427550	+	0	NA	promoter-TSS (NR_002911)	promoter-TSS (NR_002911)	43	NR_002911	26777		NR_002911	ENSG00000225091	SNORA71A	RNU71A|U71a	small nucleolar RNA, H/ACA box 71A	snoRNA
88044	chr16	81443901	81445940	+	0	NA	promoter-TSS (NM_198390)	promoter-TSS (NM_198390)	-250	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
170385	chr3	184795121	184795780	+	0	NA	Intergenic	Intergenic	-16693	NM_001349297	23355		NM_015303	ENSG00000156931	VPS8	KIAA0804	VPS8 subunit of CORVET complex	protein-coding
199971	chr6	127976401	127976600	+	0	NA	intron (NM_001291981, intron 30 of 32).2	intron (NM_001291981, intron 30 of 32).2	-51365	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
172083	chr4	1041221	1041850	+	0	NA	Intergenic	Intergenic	29071	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
679	chr1	1381421	1381680	+	0	NA	Intergenic	Intergenic	-6343	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
89500	chr16	89154071	89154230	+	0	NA	exon (NM_001127214, exon 10 of 10)	exon (NM_001127214, exon 10 of 10)	-5070	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
153318	chr22	24259221	24260080	+	0	NA	intron (NR_003714, intron 4 of 6)	intron (NR_003714, intron 4 of 6)	8029	NR_003714	29774		NM_014549	ENSG00000290696	POM121L9P	DKFZP434P211|UNQ2565	POM121 transmembrane nucleoporin like 9, pseudogene	pseudo
113398	chr19	9321551	9322050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1972	NM_001202410	84527		NM_032497	ENSG00000188321	ZNF559	NBLA00121	zinc finger protein 559	protein-coding
26359	chr10	15859821	15860850	+	0	NA	5' UTR (NM_024948, exon 1 of 15)	5' UTR (NM_024948, exon 1 of 15)	172	NM_024948	80013		NM_024948	ENSG00000148481	MINDY3	C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042	MINDY lysine 48 deubiquitinase 3	protein-coding
88552	chr16	85491071	85491450	+	0	NA	Intergenic	Intergenic	-120149	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
124811	chr2	7567301	7568550	+	0	NA	Intergenic	Intergenic	146664	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
212470	chr7	128506751	128507400	+	0	NA	TTS (NM_018396)	TTS (NM_018396)	30327	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
84967	chr16	31416551	31416950	+	0	NA	intron (NM_001318185, intron 20 of 29)	(CT)n|Simple_repeat|Simple_repeat	11610	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
165194	chr3	72549821	72550080	+	0	NA	Intergenic	Intergenic	-103327	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
2517	chr1	9705521	9706430	+	0	NA	intron (NM_001350234, intron 2 of 23)	MER3|DNA|hAT-Charlie	14508	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
33254	chr10	114496721	114497580	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	29763	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
155050	chr22	37497571	37497730	+	0	NA	intron (NM_014550, intron 11 of 19)	AluSq|SINE|Alu	-11263	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
64140	chr14	22876921	22877380	+	0	NA	exon (NM_014045, exon 7 of 7)	exon (NM_014045, exon 7 of 7)	5410	NM_001329226	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
124536	chr2	273321	273580	+	0	NA	TTS (NM_001040649)	TTS (NM_001040649)	8503	NM_004300	52		NM_004300	ENSG00000143727	ACP1	HAAP|LMW-PTP|LMWPTP	acid phosphatase 1	protein-coding
22693	chr1	223847771	223847930	+	0	NA	Intergenic	L2a|LINE|L2	-1878	NM_005426	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
226838	chr9	77944751	77945250	+	0	NA	intron (NM_002072, intron 1 of 6)	Tigger19b|DNA|TcMar-Tigger	86811	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
10903	chr1	83264151	83264250	+	0	NA	Intergenic	L1PA3|LINE|L1	-181854	NR_146478	101927542		NR_146478		LINC01712	-	long intergenic non-protein coding RNA 1712	ncRNA
160488	chr3	30615801	30616030	+	0	NA	intron (NM_003242, intron 1 of 6)	AluJo|SINE|Alu	9314	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
16072	chr1	153422421	153422700	+	0	NA	promoter-TSS (NM_001319198)	promoter-TSS (NM_001319198)	23	NM_001319198	6279		NM_002964	ENSG00000143546	S100A8	60B8AG|CAGA|CFAG|CGLA|CP-10|L1Ag|MA387|MIF|MRP8|NIF|P8|S100-A8	S100 calcium binding protein A8	protein-coding
44295	chr11	102321471	102321850	+	0	NA	intron (NM_182962, intron 1 of 9)	L2a|LINE|L2	4176	NM_001165	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
62275	chr13	98579971	98580830	+	0	NA	Intergenic	Intergenic	3145	NR_046542	100874069		NR_046542		STK24-AS1	-	STK24 antisense RNA 1	ncRNA
135459	chr2	161250821	161251100	+	0	NA	intron (NR_110593, intron 2 of 3)	intron (NR_110593, intron 2 of 3)	3683	NR_110593	101929512		NR_110593		PSMD14-DT	-	PSMD14 divergent transcript	ncRNA
205457	chr7	17167071	17167230	+	0	NA	Intergenic	LTR41|LTR|ERVL	-131502	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
65513	chr14	51899851	51900150	+	0	NA	intron (NM_053064, intron 2 of 3)	L1MB3|LINE|L1	18571	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
119076	chr19	39196921	39197930	+	0	NA	intron (NM_001001414, intron 1 of 5)	(TC)n|Simple_repeat|Simple_repeat	461	NM_001001414	342897		NM_001001414	ENSG00000188505	NCCRP1	FBXO50|NCCRP-1	NCCRP1, F-box associated domain containing	protein-coding
80067	chr16	1981971	1982700	+	0	NA	promoter-TSS (NM_001267721)	promoter-TSS (NM_001267721)	-866	NM_001267721	124056		NM_144603	ENSG00000196408	NOXO1	P41NOX|P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28	NADPH oxidase organizer 1	protein-coding
49698	chr12	30853451	30853830	+	0	NA	Intergenic	Intergenic	57959	NR_040245	100287314		NR_040245		LINC00941	lncIAPF|lncRNA-MUF	long intergenic non-protein coding RNA 941	ncRNA
50427	chr12	47412651	47412980	+	0	NA	Intergenic	Intergenic	-2193	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
174928	chr4	49120051	49120350	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	133558	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
44260	chr11	102012921	102013180	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-34387	NM_032930	85016		NM_032930	ENSG00000137691	CFAP300	C11orf70|CILD38|DNAAF17|FBB5	cilia and flagella associated protein 300	protein-coding
48431	chr12	9686651	9686850	+	0	NA	intron (NM_013269, intron 2 of 4)	intron (NM_013269, intron 2 of 4)	17037	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
63994	chr14	22485171	22485780	+	0	NA	Intergenic	Intergenic	-2516	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
160615	chr3	31502201	31502400	+	0	NA	Intergenic	AluY|SINE|Alu	-30625	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
17482	chr1	156718321	156718580	+	0	NA	Intergenic	AluY|SINE|Alu	9989	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
202859	chr6	159788901	159791480	+	0	NA	promoter-TSS (NM_001008897)	promoter-TSS (NM_001008897)	-256	NM_001318817	29074		NM_014161	ENSG00000112110	MRPL18	HSPC071|L18mt|MRP-L18|uL18m	mitochondrial ribosomal protein L18	protein-coding
132857	chr2	110876871	110877430	+	0	NA	intron (NM_001371254, intron 10 of 18)	intron (NM_001371254, intron 10 of 18)	144577	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
103635	chr17	78752301	78752680	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSx4|SINE|Alu	-15588	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
128065	chr2	47859621	47859880	+	0	NA	intron (NM_001190274, intron 1 of 22)	Tigger15a|DNA|TcMar-Tigger	28969	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
177114	chr4	108093271	108093850	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	73237	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
219024	chr8	64581571	64581830	+	0	NA	exon (NM_152414, exon 1 of 1)	exon (NM_152414, exon 1 of 1)	192	NR_152770	401463		NR_015374	ENSG00000254102	BHLHE22-AS1	-	BHLHE22 antisense RNA 1	ncRNA
57949	chr12	123723901	123724100	+	0	NA	intron (NM_012463, intron 3 of 19)	intron (NM_012463, intron 3 of 19)	11647	NM_012463	23545		NM_012463	ENSG00000185344	ATP6V0A2	A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS|a2V	ATPase H+ transporting V0 subunit a2	protein-coding
96220	chr17	39775701	39776750	+	0	NA	intron (NM_001257413, intron 3 of 3)	AluJo|SINE|Alu	2000	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
92385	chr17	8250771	8250930	+	0	NA	intron (NM_012393, intron 1 of 27)	LTR26B|LTR|ERV1	1561	NM_012393	5198		NM_012393	ENSG00000178921	PFAS	FGAMS|FGAR-AT|FGARAT|GATD8|PURL	phosphoribosylformylglycinamidine synthase	protein-coding
6824	chr1	30997801	30998400	+	0	NA	intron (NM_014676, intron 5 of 21)	L1ME3A|LINE|L1	-29863	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
94099	chr17	27756621	27757380	+	0	NA	3' UTR (NM_000625, exon 27 of 27)	3' UTR (NM_000625, exon 27 of 27)	43529	NM_000625	4843		NM_000625	ENSG00000007171	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2	protein-coding
59556	chr13	27339021	27339630	+	0	NA	Intergenic	AluSz6|SINE|Alu	68148	NM_001331126	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
63068	chr13	113158001	113158530	+	0	NA	promoter-TSS (NM_003891)	promoter-TSS (NM_003891)	-383	NM_003891	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
213714	chr7	140260671	140260830	+	0	NA	Intergenic	Intergenic	83489	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
126208	chr2	26809751	26810650	+	0	NA	Intergenic	MER34A1|LTR|ERV1	24144	NM_001809	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
56578	chr12	117188821	117189080	+	0	NA	intron (NM_015002, intron 2 of 11)	intron (NM_015002, intron 2 of 11)	1520	NM_015002	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
62755	chr13	107211151	107211330	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	109723	NR_145739	109616978		NR_145739	ENSG00000201847	SNORD31B	-	small nucleolar RNA, C/D box 31B	snoRNA
69932	chr14	99594221	99594480	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	9857	NM_001144995	317762		NM_022747	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
103552	chr17	78667251	78667500	+	0	NA	Intergenic	Intergenic	-35318	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
146812	chr20	51318021	51318480	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	134727	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
132351	chr2	105746101	105747230	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	1602	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
82332	chr16	15857101	15857530	+	0	NA	promoter-TSS (NM_001040113)	promoter-TSS (NM_001040113)	-285	NM_022844	4629		NM_002474	ENSG00000133392	MYH11	AAT4|FAA4|SMHC|SMMHC|SMMS-1|VSCM2	myosin heavy chain 11	protein-coding
83852	chr16	28877851	28877950	+	0	NA	promoter-TSS (NM_004320)	promoter-TSS (NM_004320)	-588	NM_004320	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
203261	chr6	169654351	169655330	+	0	NA	intron (NR_146875, intron 9 of 20)	intron (NR_146875, intron 9 of 20)	47189	NM_182552	253769		NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
13443	chr1	114353401	114353600	+	0	NA	Intergenic	Intergenic	157703	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
151726	chr22	17764251	17764550	+	0	NA	promoter-TSS (NR_036168)	promoter-TSS (NR_036168)	-141	NR_036168	100423025		NR_036168	ENSG00000264757	MIR3198-1	MIR3198|mir-3198-1	microRNA 3198-1	ncRNA
229295	chr9	120842521	120843700	+	0	NA	promoter-TSS (NR_024408)	promoter-TSS (NR_024408)	35	NR_024408	253039		NR_024408	ENSG00000293514	CUTALP	PSMD5-AS1	cutA divalent cation tolerance like, pseudogene	pseudo
193102	chr6	28919171	28919330	+	0	NA	intron (NM_006510, intron 3 of 7)	AluSg7|SINE|Alu	4735	NM_006510	5987		NM_006510	ENSG00000204713	TRIM27	RFP|RNF76	tripartite motif containing 27	protein-coding
25088	chr10	3872871	3873130	+	0	NA	Intergenic	Intergenic	39050	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
90999	chr17	2757351	2757650	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-7848	NM_001355573	101928991		NM_001355573	ENSG00000277200	CCDC92B	-	coiled-coil domain containing 92B	protein-coding
213613	chr7	139425421	139426780	+	0	NA	intron (NR_033999, intron 1 of 2)	AluSq2|SINE|Alu	1426	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
120819	chr19	45484701	45486530	+	0	NA	3' UTR (NM_206900, exon 10 of 10)	3' UTR (NM_206900, exon 10 of 10)	7638	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
19122	chr1	171508351	171508880	+	0	NA	intron (NM_015172, intron 1 of 33)	intron (NM_015172, intron 1 of 33)	23085	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
40601	chr11	64638021	64638280	+	0	NA	intron (NM_015080, intron 17 of 22)	CpG	5395	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
105240	chr17	82386871	82387530	+	0	NA	Intergenic	Intergenic	15435	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
4816	chr1	23606771	23608000	+	0	NA	Intergenic	Intergenic	-19949	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
26157	chr10	14182601	14183200	+	0	NA	intron (NR_134578, intron 2 of 3)	intron (NR_134578, intron 2 of 3)	108616	NR_120638	101928453		NR_120638		LOC101928453	-	uncharacterized LOC101928453	ncRNA
155444	chr22	38466121	38466480	+	0	NA	Intergenic	MIRb|SINE|MIR	-1762	NM_016657	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
34890	chr11	377251	377350	+	0	NA	exon (NM_178537, exon 14 of 20)	exon (NM_178537, exon 14 of 20)	7801	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
188459	chr5	154513621	154513880	+	0	NA	Intergenic	MLT2E|LTR|ERVL	-35523	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
106621	chr18	22350551	22350850	+	0	NA	Intergenic	MIRb|SINE|MIR	67215	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
119227	chr19	39465071	39465430	+	0	NA	intron (NM_001111020, intron 11 of 29)	L2a|LINE|L2	-2972	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
37576	chr11	19238871	19239230	+	0	NA	intron (NM_001256371, intron 2 of 12)	intron (NM_001256371, intron 2 of 12)	1895	NM_024680	79733		NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
111378	chr19	3713051	3713350	+	0	NA	intron (NM_001267560, intron 1 of 20)	intron (NM_001267560, intron 1 of 20)	4816	NM_001267560	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
33774	chr10	122952751	122953130	+	0	NA	exon (NM_024942, exon 2 of 6)	exon (NM_024942, exon 2 of 6)	1287	NM_024942	80007		NM_024942	ENSG00000119965	C10orf88	PAAT	chromosome 10 open reading frame 88	protein-coding
118937	chr19	38788351	38788930	+	0	NA	promoter-TSS (NM_001042507)	promoter-TSS (NM_001042507)	-560	NM_001042507	653499		NM_001042507	ENSG00000178934	LGALS7B	GAL7|Gal-7|HKL-14|LGALS7|PI7	galectin 7B	protein-coding
75380	chr15	65714321	65714700	+	0	NA	intron (NM_001376919, intron 14 of 31)	intron (NM_001376919, intron 14 of 31)	4822	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
32580	chr10	103467401	103468050	+	0	NA	Intergenic	MER39B|LTR|ERV1	-8825	NM_001001412	255022		NM_001001412	ENSG00000185933	CALHM1	FAM26C	calcium homeostasis modulator 1	protein-coding
124317	chr19	58095621	58095880	+	0	NA	intron (NM_001145542, intron 1 of 6)	intron (NM_001145542, intron 1 of 6)	2481	NM_001145543	65982		NM_023926	ENSG00000121413	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
39494	chr11	61020751	61020850	+	0	NA	TTS (NR_045638)	TTS (NR_045638)	49120	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
33615	chr10	119593171	119593550	+	0	NA	intron (NM_001033925, intron 1 of 11)	intron (NM_001033925, intron 1 of 11)	3669	NM_001323965	7073		NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
167806	chr3	133576801	133577400	+	0	NA	intron (NM_001282764, intron 2 of 4)	AluSq4|SINE|Alu	2666	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
34865	chr11	350571	351330	+	0	NA	Intergenic	MER41-int|LTR|ERV1	-18549	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
150524	chr21	42957851	42957950	+	0	NA	Intergenic	AluSx|SINE|Alu	-6886	NR_049889	100847013		NR_049889	ENSG00000264580	MIR5692B	-	microRNA 5692b	ncRNA
119343	chr19	39974101	39974300	+	0	NA	intron (NM_006503, intron 3 of 10)	intron (NM_006503, intron 3 of 10)	3035	NM_006503	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
207916	chr7	50653201	50653600	+	0	NA	intron (NM_001371008, intron 4 of 15)	intron (NM_001371008, intron 4 of 15)	51901	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
111651	chr19	4202701	4203100	+	0	NA	exon (NM_133475, exon 7 of 22)	exon (NM_133475, exon 7 of 22)	19546	NM_133475	170961		NM_133475	ENSG00000089847	ANKRD24	-	ankyrin repeat domain 24	protein-coding
121604	chr19	47414471	47415100	+	0	NA	exon (NM_001346148, exon 6 of 13)	exon (NM_001346148, exon 6 of 13)	4742	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
159112	chr3	12584021	12584400	+	0	NA	TTS (NM_001271707)	TTS (NM_001271707)	-23211	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
119192	chr19	39432821	39433200	+	0	NA	TTS (NM_001321111)	TTS (NM_001321111)	2939	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
28594	chr10	55184101	55184300	+	0	NA	intron (NM_001354404, intron 2 of 34)	BLACKJACK|DNA|hAT-Blackjack	-382969	NM_001142772	65217		NM_033056	ENSG00000150275	PCDH15	CDHR15|DFNB23|USH1F	protocadherin related 15	protein-coding
67465	chr14	70883051	70883550	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-24159	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
122815	chr19	50388301	50388500	+	0	NA	intron (NR_046402, intron 1 of 25)	intron (NR_046402, intron 1 of 25)	4053	NR_046402	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
204969	chr7	6378501	6378700	+	0	NA	intron (NM_018890, intron 1 of 6)	intron (NM_018890, intron 1 of 6)	4073	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
167587	chr3	129556971	129557130	+	0	NA	intron (NM_015103, intron 34 of 35)	intron (NM_015103, intron 34 of 35)	8665	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
105573	chr18	105301	106100	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-3365	NR_033770	727758		NR_033770	ENSG00000290877	ROCK1P1	ROCK1P	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
196483	chr6	43605671	43605830	+	0	NA	intron (NM_006502, intron 9 of 10)	AluSq|SINE|Alu	21603	NM_001286216	54676		NM_019096	ENSG00000172432	GTPBP2	JABELS	GTP binding protein 2	protein-coding
124084	chr19	55631401	55632100	+	0	NA	Intergenic	Intergenic	-7184	NM_203374	147808		NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
134967	chr2	152126701	152126900	+	0	NA	intron (NM_005843, intron 11 of 13)	MER51A|LTR|ERV1	-27633	NM_001145798	785		NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
197767	chr6	87436371	87436750	+	0	NA	intron (NM_001031743, intron 11 of 12)	intron (NM_001031743, intron 11 of 12)	28588	NM_001031743	154313		NM_178823	ENSG00000272514	CFAP206	C6orf165|dJ382I10.1	cilia and flagella associated protein 206	protein-coding
180724	chr5	31516871	31517030	+	0	NA	intron (NM_001382508, intron 6 of 35)	L1ME4a|LINE|L1	15143	NM_001382508	29102		NM_013235	ENSG00000113360	DROSHA	ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN	drosha ribonuclease III	protein-coding
7291	chr1	32392471	32392950	+	0	NA	intron (NM_018045, intron 2 of 10)	intron (NM_018045, intron 2 of 10)	1731	NM_018045	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
9133	chr1	45488851	45488950	+	0	NA	intron (NM_007170, intron 1 of 10)	AluJo|SINE|Alu	2263	NM_007170	10420		NM_007170	ENSG00000070759	TESK2	-	testis associated actin remodelling kinase 2	protein-coding
169460	chr3	168088371	168088780	+	0	NA	intron (NM_001308155, intron 1 of 14)	MIRb|SINE|MIR	7349	NM_001308155	27333		NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
235020	chrX	40009821	40010150	+	0	NA	Intergenic	Intergenic	87973	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
72497	chr15	33068101	33068300	+	0	NA	promoter-TSS (NM_001103184).4	promoter-TSS (NM_001103184).4	-26	NM_001103184	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
121954	chr19	48473801	48474850	+	0	NA	exon (NM_004228, exon 7 of 12)	exon (NM_004228, exon 7 of 12)	4956	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
119049	chr19	39071271	39071630	+	0	NA	Intergenic	AluJb|SINE|Alu	-12918	NM_001363687	390928		NM_001004318	ENSG00000183760	ACP7	PAPL|PAPL1	acid phosphatase 7, tartrate resistant (putative)	protein-coding
111901	chr19	4681521	4682000	+	0	NA	intron (NM_001384628, intron 20 of 21)	AluSz|SINE|Alu	2478	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
193474	chr6	30534951	30535680	+	0	NA	Intergenic	L2b|LINE|L2	19049	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
142453	chr20	4011571	4012200	+	0	NA	intron (NM_001134338, intron 1 of 6)	HAL1|LINE|L1	3673	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
46369	chr11	126214001	126214480	+	0	NA	intron (NM_024556, intron 1 of 8)	AluY|SINE|Alu	2458	NM_024556	79607		NM_024556	ENSG00000197798	FAM118B	-	family with sequence similarity 118 member B	protein-coding
67490	chr14	70922651	70922950	+	0	NA	intron (NM_014982, intron 1 of 35)	L1ME4b|LINE|L1	15341	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
20618	chr1	198966521	198966980	+	0	NA	Intergenic	L1PB2|LINE|L1	-29321	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
79981	chr16	1792451	1793780	+	0	NA	intron (NM_001146006, intron 1 of 1)	intron (NM_001146006, intron 1 of 1)	590	NM_004970	3483		NM_004970	ENSG00000099769	IGFALS	ACLSD|ALS	insulin like growth factor binding protein acid labile subunit	protein-coding
31007	chr10	88560701	88560900	+	0	NA	intron (NM_018363, intron 4 of 6)	intron (NM_018363, intron 4 of 6)	22518	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
169791	chr3	173397271	173397950	+	0	NA	promoter-TSS (NM_001365926)	promoter-TSS (NM_001365926)	-134	NM_001365931	22871		NM_014932	ENSG00000169760	NLGN1	NL1|NLG1	neuroligin 1	protein-coding
44486	chr11	105069921	105070630	+	0	NA	intron (NR_131905, intron 2 of 4)	intron (NR_131905, intron 2 of 4)	1255	NR_131905	440067		NR_131905		CASP1P2	-	caspase 1 pseudogene 2	pseudo
53585	chr12	67783371	67783530	+	0	NA	Intergenic	Intergenic	-53975	NR_110063	101927901		NR_110063	ENSG00000255970	LINC02421	-	long intergenic non-protein coding RNA 2421	ncRNA
99836	chr17	55267901	55268330	+	0	NA	intron (NM_002126, intron 2 of 3)	intron (NM_002126, intron 2 of 3)	1893	NM_001330375	3131		NM_002126	ENSG00000108924	HLF	-	HLF transcription factor, PAR bZIP family member	protein-coding
94127	chr17	28229921	28230300	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	3547	NR_003064	23615		NM_021093	ENSG00000290671	PYY2	-	peptide YY 2 (pseudogene)	pseudo
175481	chr4	73127821	73128130	+	0	NA	intron (NM_032217, intron 16 of 33)	intron (NM_032217, intron 16 of 33)	-58216	NM_001300729	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
52610	chr12	56236551	56237650	+	0	NA	TTS (NM_173595)	TTS (NM_173595)	6383	NM_001135195	283375		NM_173596	ENSG00000139540	SLC39A5	LZT-Hs7|MYP24|ZIP5	solute carrier family 39 member 5	protein-coding
222583	chr8	140645971	140646480	+	0	NA	Intergenic	AluY|SINE|Alu	-10592	NM_012154	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
171863	chr4	744621	744880	+	0	NA	intron (NM_001317836, intron 9 of 11)	CpG	37098	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
132678	chr2	108784451	108784750	+	0	NA	3' UTR (NM_006267, exon 29 of 29)	3' UTR (NM_006267, exon 29 of 29)	-2150	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
113730	chr19	10474601	10474800	+	0	NA	Intergenic	Intergenic	21768	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
209826	chr7	88219661	88221100	+	0	NA	promoter-TSS (NM_001256891)	promoter-TSS (NM_001256891)	-296	NM_001256891	6717		NM_003130	ENSG00000075142	SRI	CP-22|CP22|SCN|V19	sorcin	protein-coding
197510	chr6	75750921	75751180	+	0	NA	intron (NR_160538, intron 1 of 32)	intron (NR_160538, intron 1 of 32)	1811	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
180623	chr5	16626021	16626280	+	0	NA	intron (NR_109946, intron 3 of 3)	intron (NR_109946, intron 3 of 3)	-9092	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
114250	chr19	11534871	11535280	+	0	NA	Intergenic	Intergenic	-3776	NM_001308342	1264		NM_001299	ENSG00000130176	CNN1	HEL-S-14|SMCC|Sm-Calp	calponin 1	protein-coding
11846	chr1	92962301	92963730	+	0	NA	Intergenic	L2a|LINE|L2	-1493	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
14871	chr1	146443471	146444700	+	0	NA	Intergenic	Intergenic	-42247	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
181526	chr5	43050201	43050400	+	0	NA	intron (NR_104651, intron 2 of 2)	intron (NR_104651, intron 2 of 2)	-7053	NM_001382352	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
95467	chr17	36188521	36189450	+	0	NA	Intergenic	Intergenic	7321	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
218278	chr8	42279251	42279750	+	0	NA	intron (NM_001242778, intron 2 of 20)	MIRb|SINE|MIR	8198	NM_001242778	3551		NM_001556	ENSG00000104365	IKBKB	IKK-2|IKK-beta|IKK2|IKKB|IMD15|IMD15A|IMD15B|NFKBIKB	inhibitor of nuclear factor kappa B kinase subunit beta	protein-coding
121703	chr19	47578451	47578550	+	0	NA	Intergenic	Intergenic	-5352	NM_001277075	84215		NM_032255	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
104062	chr17	80193101	80193300	+	0	NA	intron (NM_052819, intron 6 of 9)	intron (NM_052819, intron 6 of 9)	5400	NM_052819	79092		NM_024110	ENSG00000141527	CARD14	BIMP2|CARMA2|PRP|PSORS2|PSS1	caspase recruitment domain family member 14	protein-coding
79792	chr16	1389621	1390180	+	0	NA	intron (NM_001372107, intron 9 of 14)	AluSx3|SINE|Alu	-10248	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
194686	chr6	33685101	33685300	+	0	NA	intron (NM_002224, intron 39 of 57)	intron (NM_002224, intron 39 of 57)	-12928	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
24250	chr1	236283471	236283780	+	0	NA	Intergenic	AluSp|SINE|Alu	-1667	NM_019891	56605		NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding
5431	chr1	25564951	25565750	+	0	NA	intron (NM_015627, intron 8 of 8)	L3|LINE|CR1	21744	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
224287	chr9	6425351	6425450	+	0	NA	intron (NR_046386, intron 2 of 16)	L1MC3|LINE|L1	12201	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
191006	chr6	3072771	3072930	+	0	NA	intron (NM_001354934, intron 1 of 11)	intron (NM_001354934, intron 1 of 11)	4356	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
18519	chr1	161777201	161777600	+	0	NA	intron (NM_007348, intron 1 of 15)	intron (NM_007348, intron 1 of 15)	11080	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
219942	chr8	88686001	88686200	+	0	NA	Intergenic	L1HS|LINE|L1	-358617	NM_005941	4325		NM_005941	ENSG00000156103	MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16	protein-coding
1934	chr1	6490601	6491680	+	0	NA	promoter-TSS (NM_001042664)	promoter-TSS (NM_001042664)	527	NM_020631	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
148625	chr21	5603401	5604930	+	0	NA	Intergenic	Intergenic	34961	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
141428	chr2	240996371	240996530	+	0	NA	Intergenic	Intergenic	-2168	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
136125	chr2	173954921	173955750	+	0	NA	exon (NM_003111, exon 4 of 7)	exon (NM_003111, exon 4 of 7)	8545	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
125718	chr2	20507251	20507350	+	0	NA	Intergenic	L1MD|LINE|L1	-5776	NR_157978	107985856		NR_157978		LOC107985856	-	uncharacterized LOC107985856	ncRNA
14178	chr1	121458501	121458900	+	0	NA	Intergenic	Intergenic	-60412	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
29832	chr10	72327971	72328280	+	0	NA	Intergenic	Intergenic	26794	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
73472	chr15	43513701	43514830	+	0	NA	Intergenic	Intergenic	-3343	NM_002373	4130		NM_002373	ENSG00000166963	MAP1A	MAP1L|MTAP1A	microtubule associated protein 1A	protein-coding
797	chr1	1545901	1546300	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	-5476	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
5198	chr1	24959471	24959630	+	0	NA	intron (NM_001031680, intron 1 of 5)	MER81|DNA|hAT-Blackjack	5460	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
146959	chr20	52409021	52409300	+	0	NA	Intergenic	MIRb|SINE|MIR	-211678	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
38640	chr11	46364321	46364780	+	0	NA	intron (NM_001105540, intron 1 of 31)	MamRTE1|LINE|RTE-BovB	2944	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
216693	chr8	22164541	22166250	+	0	NA	promoter-TSS (NM_001199)	promoter-TSS (NM_001199)	23	NR_033403	649		NM_001199	ENSG00000168487	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
130581	chr2	85840101	85840900	+	0	NA	intron (NM_001363847, intron 5 of 5)	intron (NM_001363847, intron 5 of 5)	13671	NM_001354248	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
195727	chr6	39215771	39215930	+	0	NA	intron (NM_003740, intron 1 of 4)	intron (NM_003740, intron 1 of 4)	13625	NM_003740	8645		NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding
40309	chr11	63882601	63883530	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	-5472	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
85256	chr16	48483771	48484050	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-98497	NM_003031	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
237060	chrX	103463851	103464400	+	0	NA	Intergenic	Intergenic	55364	NM_080879	142684		NM_080879	ENSG00000172476	RAB40A	RAR2|RAR2A	RAB40A, member RAS oncogene family	protein-coding
127651	chr2	43154801	43155300	+	0	NA	Intergenic	Intergenic	-52605	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
117604	chr19	22010451	22011050	+	0	NA	intron (NR_138252, intron 1 of 4)	CpG	193	NR_138252	7757		NM_007153	ENSG00000160321	ZNF208	PMIDP|ZNF95	zinc finger protein 208	protein-coding
179658	chr4	189846251	189846550	+	0	NA	intron (NR_149039, intron 3 of 3)	CpG	-35115	NR_132380	105377617		NR_132380	ENSG00000250666	LINC01596	-	long intergenic non-protein coding RNA 1596	ncRNA
214837	chr7	151273121	151273380	+	0	NA	intron (NM_001003802, intron 2 of 13)	intron (NM_001003802, intron 2 of 13)	3484	NM_001003802	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
108735	chr18	77097801	77098800	+	0	NA	intron (NM_001025100, intron 2 of 3)	MIR|SINE|MIR	34483	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
192989	chr6	28124121	28125930	+	0	NA	intron (NM_025231, intron 1 of 3)	MIRb|SINE|MIR	416	NM_001320556	80345		NM_025231	ENSG00000196812	ZSCAN16	ZNF392|ZNF435|dJ265C24.3	zinc finger and SCAN domain containing 16	protein-coding
138109	chr2	202277521	202277780	+	0	NA	promoter-TSS (NR_145774)	promoter-TSS (NR_145774)	-463	NR_145774	109616995		NR_145774	ENSG00000212309	SNORD70B	-	small nucleolar RNA, C/D box 70B	snoRNA
71680	chr15	20007351	20007650	+	0	NA	Intergenic	L1ME3B|LINE|L1	-275244	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
210339	chr7	99506251	99506950	+	0	NA	intron (NM_145102, intron 2 of 6)	intron (NM_145102, intron 2 of 6)	595	NM_001318084	23660		NM_014569	ENSG00000196652	ZKSCAN5	ZFP-95|ZFP95|ZNF914|ZSCAN37	zinc finger with KRAB and SCAN domains 5	protein-coding
12976	chr1	110897071	110897230	+	0	NA	intron (NM_001040033, intron 7 of 8)	intron (NM_001040033, intron 7 of 8)	24002	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
208107	chr7	57020751	57020860	+	0	NA	Intergenic	Intergenic	-64941	NR_036270	100422848		NR_036270	ENSG00000265214	MIR4283-2	-	microRNA 4283-2	ncRNA
146609	chr20	50149121	50149400	+	0	NA	intron (NM_199129, intron 1 of 5)	intron (NM_199129, intron 1 of 5)	4463	NM_001162505	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
117954	chr19	33248701	33248900	+	0	NA	Intergenic	Intergenic	-22950	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
160153	chr3	20107271	20107930	+	0	NA	intron (NM_003884, intron 5 of 17)	AluSx1|SINE|Alu	-29965	NR_036086	100422901		NR_036086	ENSG00000266745	MIR3135A	MIR3135|hsa-mir-3135a	microRNA 3135a	ncRNA
17980	chr1	160483351	160484050	+	0	NA	Intergenic	L2|LINE|L2	39555	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
127901	chr2	46293971	46294630	+	0	NA	Intergenic	Intergenic	-3107	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
179908	chr5	686301	686700	+	0	NA	intron (NM_007030, intron 1 of 3)	(CCCTG)n|Simple_repeat|Simple_repeat	6852	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
220059	chr8	93822221	93822560	+	0	NA	Intergenic	Intergenic	67496	NR_024522	91147		NM_153704	ENSG00000164953	TMEM67	JBTS6|MECKELIN|MKS3|NPHP11|TNEM67	transmembrane protein 67	protein-coding
83918	chr16	29020951	29021050	+	0	NA	Intergenic	L1ME4b|LINE|L1	35948	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
189634	chr5	176042121	176042580	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	19705	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
120602	chr19	45023221	45024100	+	0	NA	intron (NM_006509, intron 4 of 10)	AluY|SINE|Alu	-15385	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
102160	chr17	75128201	75128400	+	0	NA	intron (NM_024585, intron 2 of 2)	AluSx1|SINE|Alu	3442	NR_045513	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
76084	chr15	72485151	72485250	+	0	NA	intron (NM_005744, intron 1 of 13)	L1MD2|LINE|L1	10870	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
8800	chr1	42933951	42934500	+	0	NA	intron (NM_006516, intron 2 of 9)	intron (NM_006516, intron 2 of 9)	24643	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
238438	chrX	151360021	151360500	+	0	NA	Intergenic	Intergenic	-36335	NM_001363810	203547		NM_001017980	ENSG00000160131	VMA21	MEAX|XMEA	vacuolar ATPase assembly factor VMA21	protein-coding
202666	chr6	158782801	158783350	+	0	NA	intron (NM_003379, intron 6 of 12)	intron (NM_003379, intron 6 of 12)	-18322	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
231635	chr9	131593751	131594130	+	0	NA	intron (NM_001377935, intron 17 of 26)	intron (NM_001377935, intron 17 of 26)	48417	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
117703	chr19	28710451	28710550	+	0	NA	intron (NR_110759, intron 5 of 9)	intron (NR_110759, intron 5 of 9)	17194	NR_110759	100420587		NR_110759	ENSG00000283403	LOC100420587	-	SHC binding and spindle associated 1 pseudogene	pseudo
216794	chr8	22539671	22540970	+	0	NA	intron (NM_005605, intron 13 of 13)	intron (NM_005605, intron 13 of 13)	-11607	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
181722	chr5	50679421	50679680	+	0	NA	intron (NM_024615, intron 2 of 25)	Kanga11a|DNA|TcMar-Tc2	12136	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
98794	chr17	48236751	48236930	+	0	NA	intron (NM_001075099, intron 4 of 12)	L2c|LINE|L2	-57507	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
33930	chr10	124608671	124609080	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-95153	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
60652	chr13	42574051	42574350	+	0	NA	promoter-TSS (NM_003701)	promoter-TSS (NM_003701)	48	NM_003701	8600		NM_003701	ENSG00000120659	TNFSF11	CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf	TNF superfamily member 11	protein-coding
189733	chr5	176548871	176549450	+	0	NA	promoter-TSS (NM_017675)	promoter-TSS (NM_017675)	-182	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
214496	chr7	150446271	150447150	+	0	NA	non-coding (NR_034033, exon 3 of 4)	non-coding (NR_034033, exon 3 of 4)	-3920	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
77474	chr15	84510171	84510400	+	0	NA	non-coding (NR_003246, exon 9 of 10)	non-coding (NR_003246, exon 9 of 10)	6562	NM_001267536	643707		NM_001267536	ENSG00000184206	GOLGA6L4	-	golgin A6 family like 4	protein-coding
186530	chr5	138437601	138437950	+	0	NA	TTS (NM_016604)	TTS (NM_016604)	-1282	NM_016606	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
143892	chr20	32576251	32576350	+	0	NA	intron (NM_001256798, intron 1 of 10)	L2a|LINE|L2	9033	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
120952	chr19	45696201	45696400	+	0	NA	intron (NM_017659, intron 3 of 6)	L2a|LINE|L2	3634	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
176145	chr4	83154901	83155100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-40271	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
172632	chr4	2532151	2532650	+	0	NA	Intergenic	AluSg|SINE|Alu	-2975	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
173061	chr4	6106011	6106150	+	0	NA	intron (NM_001306133, intron 2 of 12)	intron (NM_001306133, intron 2 of 12)	-87534	NM_001364690	389197		NM_207405	ENSG00000181215	C4orf50	-	chromosome 4 open reading frame 50	protein-coding
57767	chr12	122985621	122986180	+	0	NA	3' UTR (NM_020845, exon 26 of 26)	3' UTR (NM_020845, exon 26 of 26)	5840	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
49897	chr12	39426751	39426850	+	0	NA	intron (NM_001378440, intron 1 of 36)	AluSz6|SINE|Alu	16320	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
79596	chr16	1048351	1049100	+	0	NA	Intergenic	Intergenic	-24031	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
164662	chr3	66890051	66890350	+	0	NA	Intergenic	Intergenic	-108107	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
177755	chr4	122635101	122635930	+	0	NA	intron (NR_104126, intron 7 of 10)	intron (NR_104126, intron 7 of 10)	-14449	NM_021803	59067		NM_021803	ENSG00000138684	IL21	CVID11|IL-21|Za11	interleukin 21	protein-coding
51903	chr12	53622671	53623230	+	0	NA	intron (NR_159377, intron 1 of 14)	AluJr4|SINE|Alu	3040	NM_001366562	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
194328	chr6	32847121	32847530	+	0	NA	TTS (NR_037176)	TTS (NR_037176)	-2646	NM_004159	5696		NM_004159	ENSG00000204264	PSMB8	ALDD|D6S216|D6S216E|JMP|LMP7|NKJO|PRAAS1|PSMB5i|RING10	proteasome 20S subunit beta 8	protein-coding
202698	chr6	158810251	158810730	+	0	NA	intron (NM_003379, intron 1 of 12)	L2c|LINE|L2	-7489	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
61155	chr13	48835811	48836030	+	0	NA	Intergenic	AluSc|SINE|Alu	-139992	NM_001079673	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
156730	chr22	41803671	41804130	+	0	NA	intron (NM_001382346, intron 2 of 7)	AluY|SINE|Alu	3221	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
174551	chr4	40210171	40210330	+	0	NA	intron (NM_001278362, intron 2 of 3)	intron (NM_001278362, intron 2 of 3)	13219	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
47638	chr12	6232151	6232250	+	0	NA	intron (NM_001769, intron 2 of 7)	intron (NM_001769, intron 2 of 7)	31800	NM_001769	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
159533	chr3	14439871	14440030	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	37344	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
59752	chr13	30049771	30050130	+	0	NA	Intergenic	Intergenic	58925	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
132800	chr2	110317471	110317630	+	0	NA	Intergenic	Intergenic	32697	NR_049830	100847033		NR_049830	ENSG00000263881	MIR4436B2	-	microRNA 4436b-2	ncRNA
52935	chr12	57430311	57431850	+	0	NA	promoter-TSS (NM_001351213)	promoter-TSS (NM_001351213)	-37	NM_001351207	22864		NM_014925	ENSG00000179912	R3HDM2	CAG6|PR01365	R3H domain containing 2	protein-coding
103756	chr17	78928371	78928730	+	0	NA	Intergenic	L2a|LINE|L2	-3163	NM_003255	7077		NM_003255	ENSG00000035862	TIMP2	CSC-21K|DDC8	TIMP metallopeptidase inhibitor 2	protein-coding
11427	chr1	89752521	89753500	+	0	NA	Intergenic	L1PA2|LINE|L1	-68022	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
58700	chr12	132559771	132560400	+	0	NA	intron (NM_001382740, intron 5 of 11)	CpG	-21912	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
214468	chr7	150364851	150365350	+	0	NA	Intergenic	AluSx|SINE|Alu	-2996	NM_001362746	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
87854	chr16	76976251	76976350	+	0	NA	Intergenic	Intergenic	107364	NR_039870	100616172		NR_039870	ENSG00000266426	MIR4719	-	microRNA 4719	ncRNA
192548	chr6	25282071	25282500	+	0	NA	intron (NM_001173977, intron 1 of 36)	intron (NM_001173977, intron 1 of 36)	2911	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
146731	chr20	50729601	50730100	+	0	NA	Intergenic	Intergenic	-1730	NM_032521	84612		NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding
151522	chr21	46436451	46436550	+	0	NA	intron (NM_006031, intron 39 of 46)	intron (NM_006031, intron 39 of 46)	-22391	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
205400	chr7	16398071	16398630	+	0	NA	intron (NR_160656, intron 2 of 7)	intron (NR_160656, intron 2 of 7)	23188	NM_001101417	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
104236	chr17	80705921	80706250	+	0	NA	intron (NM_020761, intron 3 of 33)	intron (NM_020761, intron 3 of 33)	99547	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
145287	chr20	41032151	41032250	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	3378	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
235593	chrX	47583421	47583880	+	0	NA	intron (NM_003254, intron 2 of 5)	L2a|LINE|L2	1214	NM_003254	7076		NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP|TIMP-1	TIMP metallopeptidase inhibitor 1	protein-coding
88083	chr16	81493671	81494330	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-1354	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
9563	chr1	51731171	51732180	+	0	NA	intron (NM_148905, intron 1 of 18)	AluSx1|SINE|Alu	1825	NM_001350210	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
183340	chr5	76741271	76742030	+	0	NA	Intergenic	L1PA15|LINE|L1	25524	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
183875	chr5	87274871	87275230	+	0	NA	intron (NM_022650, intron 1 of 24)	intron (NM_022650, intron 1 of 24)	6113	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
155007	chr22	37330351	37330700	+	0	NA	Intergenic	Intergenic	24314	NR_110515	100506271		NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA
88276	chr16	83802051	83802650	+	0	NA	intron (NR_120308, intron 2 of 2)	intron (NR_120308, intron 2 of 2)	1626	NR_120308	102724163		NR_120308	ENSG00000260228	CDH13-AS2	-	CDH13 antisense RNA 2	ncRNA
190985	chr6	3021971	3022130	+	0	NA	non-coding (NR_033884, exon 1 of 1)	non-coding (NR_033884, exon 1 of 1)	1840	NR_033884	401233		NM_001013680		HTATSF1P2	-	HIV-1 Tat specific factor 1 pseudogene 2	pseudo
201131	chr6	142889021	142889480	+	0	NA	intron (NM_006734, intron 1 of 9)	AluJr4|SINE|Alu	55926	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
189116	chr5	170411021	170411280	+	0	NA	intron (NR_109899, intron 1 of 2)	intron (NR_109899, intron 1 of 2)	21657	NR_109899	101928033		NR_109899	ENSG00000253647	KCNIP1-OT1	CTD-2270F17.1	KCNIP1 overlapping transcript 1	ncRNA
74335	chr15	58517371	58518100	+	0	NA	intron (NM_000236, intron 1 of 8)	intron (NM_000236, intron 1 of 8)	-19000	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
220353	chr8	99633851	99634460	+	0	NA	intron (NM_152564, intron 33 of 61)	intron (NM_152564, intron 33 of 61)	-97294	NR_030596	100126309		NR_030596	ENSG00000216069	MIR875	MIRN875|hsa-mir-875	microRNA 875	ncRNA
91478	chr17	4890701	4891600	+	0	NA	intron (NM_001024937, intron 15 of 31)	intron (NM_001024937, intron 15 of 31)	-8386	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
212335	chr7	127409551	127409850	+	0	NA	Intergenic	Intergenic	-16992	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
46661	chr11	128712201	128712400	+	0	NA	intron (NM_001271010, intron 1 of 9)	MSTB|LTR|ERVL-MaLR	-16277	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
52457	chr12	55946871	55947030	+	0	NA	intron (NR_147026, intron 18 of 24)	AluSp|SINE|Alu	10942	NM_001351037	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
37772	chr11	32171651	32172250	+	0	NA	Intergenic	AluYc|SINE|Alu	-28038	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
222055	chr8	130287771	130287930	+	0	NA	intron (NM_001362924, intron 3 of 30)	L2b|LINE|L2	8683	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
238867	chrX	154528471	154528730	+	0	NA	Intergenic	AluSg|SINE|Alu	-12358	NM_001171134	60343		NM_021806	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	FAM3 metabolism regulating signaling molecule A	protein-coding
210033	chr7	94274051	94274150	+	0	NA	Intergenic	LOR1b|LTR|ERV1	118092	NR_147206	101927525		NR_147206		COL1A2-AS1	TCONS_00013888|lncRNA8975-1	COL1A2 antisense RNA 1	ncRNA
108869	chr18	79383051	79383430	+	0	NA	Intergenic	Intergenic	-12690	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
65704	chr14	52776821	52777080	+	0	NA	3' UTR (NM_198066, exon 6 of 6)	3' UTR (NM_198066, exon 6 of 6)	14657	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
127378	chr2	39437901	39438430	+	0	NA	promoter-TSS (NM_001270425)	promoter-TSS (NM_001270425)	749	NR_037875	728730		NR_037875	ENSG00000231312	MAP4K3-DT	-	MAP4K3 divergent transcript	ncRNA
226448	chr9	71697771	71698130	+	0	NA	intron (NM_001135820, intron 19 of 22)	intron (NM_001135820, intron 19 of 22)	70563	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
179371	chr4	183446521	183447000	+	0	NA	exon (NM_017632, exon 3 of 3)	exon (NM_017632, exon 3 of 3)	2124	NM_017632	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
166021	chr3	108322401	108322600	+	0	NA	intron (NM_001282557, intron 1 of 9)	LTR52|LTR|ERVL	10715	NM_001282557	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
234198	chrX	12946871	12947500	+	0	NA	Intergenic	Intergenic	-3885	NR_030727	349408		NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
94621	chr17	29892251	29892550	+	0	NA	intron (NM_001282129, intron 1 of 15)	intron (NM_001282129, intron 1 of 15)	-37503	NM_001145053	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
199645	chr6	122322901	122323400	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-76401	NM_001135564	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
149015	chr21	14541201	14542250	+	0	NA	intron (NM_001286523, intron 1 of 8)	L2a|LINE|L2	4590	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
24934	chr10	1159421	1159830	+	0	NA	promoter-TSS (NR_015376)	promoter-TSS (NR_015376)	-143	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
5367	chr1	25365851	25366350	+	0	NA	intron (NM_138618, intron 8 of 8)	intron (NM_138618, intron 8 of 8)	27766	NM_014313	23585		NM_014313	ENSG00000183726	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
155834	chr22	39405471	39405630	+	0	NA	intron (NM_153497, intron 1 of 10)	intron (NM_153497, intron 1 of 10)	5770	NM_153497	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
156366	chr22	41024201	41024400	+	0	NA	Intergenic	AluSx|SINE|Alu	49421	NR_132979	106635682		NR_132979		SNORD140	-	small nucleolar RNA, C/D box 140	snoRNA
204806	chr7	5660171	5660530	+	0	NA	intron (NM_207111, intron 13 of 16)	AluSc|SINE|Alu	20111	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
198473	chr6	106186971	106187150	+	0	NA	intron (NR_104402, intron 5 of 5)	intron (NR_104402, intron 5 of 5)	88119	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
106508	chr18	21044351	21044800	+	0	NA	intron (NM_005406, intron 5 of 32)	intron (NM_005406, intron 5 of 32)	67238	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
60725	chr13	44271121	44271580	+	0	NA	Intergenic	Intergenic	-75150	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
37434	chr11	17388931	17390000	+	0	NA	promoter-TSS (NM_001166290)	promoter-TSS (NM_001166290)	-119	NM_001166290	3767		NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|PNDM2|TNDM3	potassium inwardly rectifying channel subfamily J member 11	protein-coding
143725	chr20	32318771	32319750	+	0	NA	intron (NM_004798, intron 5 of 8)	AluJb|SINE|Alu	-39071	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
73970	chr15	51861171	51862300	+	0	NA	intron (NM_014547, intron 1 of 9)	AluJb|SINE|Alu	32082	NM_014547	29766		NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
72264	chr15	30625531	30627030	+	0	NA	promoter-TSS (NR_157599).3	promoter-TSS (NR_157599).3	132	NR_148423	89839		NM_001039841	ENSG00000285077	ARHGAP11B	B'-T|FAM7B1|GAP (1-8)	Rho GTPase activating protein 11B	protein-coding
97351	chr17	43292471	43292850	+	0	NA	Intergenic	LTR13|LTR|ERVK	3955	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
162802	chr3	49107701	49108300	+	0	NA	TTS (NM_001199161)	TTS (NM_001199161)	-3243	NM_001272073	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
238361	chrX	149904221	149904480	+	0	NA	Intergenic	L1MCb|LINE|L1	-7344	NR_102703	101410537		NR_102703		MAGEA8-AS1	-	MAGEA8 antisense RNA 1	ncRNA
223561	chr8	144259601	144260600	+	0	NA	intron (NM_032450, intron 38 of 43)	intron (NM_032450, intron 38 of 43)	2637	NR_107057	102465906		NR_107057	ENSG00000284054	MIR7112	MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2	microRNA 7112	ncRNA
144394	chr20	35267321	35267580	+	0	NA	intron (NM_006690, intron 6 of 8)	intron (NM_006690, intron 6 of 8)	10672	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
118630	chr19	37227871	37228250	+	0	NA	intron (NM_152604, intron 1 of 4)	LTR13|LTR|ERVK	1596	NM_152604	163087		NM_152604	ENSG00000188283	ZNF383	HSD17|Zfp383	zinc finger protein 383	protein-coding
123252	chr19	53308421	53308680	+	0	NA	Intergenic	CpG	-17116	NR_159880	112401		NM_033341	ENSG00000293247	BIRC8	ILP-2|ILP2|RNF136|hILP2	baculoviral IAP repeat containing 8	pseudo
37252	chr11	14638051	14638980	+	0	NA	intron (NM_148976, intron 1 of 10)	(CT)n|Simple_repeat|Simple_repeat	5119	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
181895	chr5	54532771	54532930	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	15091	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
130306	chr2	84936271	84937100	+	0	NA	Intergenic	Intergenic	31029	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
179877	chr5	628721	629800	+	0	NA	intron (NR_164122, intron 4 of 15)	intron (NR_164122, intron 4 of 15)	16920	NM_018140	55722		NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72	protein-coding
218136	chr8	41646451	41647080	+	0	NA	intron (NM_001364841, intron 2 of 2)	intron (NM_001364841, intron 2 of 2)	594	NM_152568	157848		NM_152568	ENSG00000165066	NKX6-3	NKX6.3	NK6 homeobox 3	protein-coding
19304	chr1	173154001	173154350	+	0	NA	Intergenic	L1PA4|LINE|L1	51357	NM_001297562	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
232230	chr9	134379621	134379880	+	0	NA	TTS (NR_039816)	TTS (NR_039816)	339	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
124732	chr2	6773051	6773400	+	0	NA	Intergenic	Intergenic	-2914	NR_038369	400941		NM_001001695	ENSG00000205837	LINC00487	-	long intergenic non-protein coding RNA 487	ncRNA
20817	chr1	201309651	201309750	+	0	NA	intron (NM_001005337, intron 2 of 13)	MamRTE1|LINE|RTE-BovB	26194	NM_001005337	5317		NM_000299	ENSG00000081277	PKP1	B6P|EDSFS	plakophilin 1	protein-coding
209595	chr7	77543971	77544700	+	0	NA	intron (NM_001131008, intron 1 of 17)	intron (NM_001131008, intron 1 of 17)	6292	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
67781	chr14	73747351	73748100	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-11022	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
88756	chr16	86568201	86568780	+	0	NA	promoter-TSS (NR_125795)	promoter-TSS (NR_125795)	-729	NR_125795	103752587		NR_125795		FOXC2-AS1	ODRUL	FOXC2 antisense RNA 1	ncRNA
14361	chr1	144057171	144057650	+	0	NA	intron (NR_120535, intron 5 of 7)	intron (NR_120535, intron 5 of 7)	-83891	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
86007	chr16	57473571	57474300	+	0	NA	exon (NM_018110, exon 7 of 9)	exon (NM_018110, exon 7 of 9)	5822	NM_001369621	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
46879	chr11	133991121	133991430	+	0	NA	Intergenic	Intergenic	-34307	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
216288	chr8	12561601	12561800	+	0	NA	intron (NR_047662, intron 8 of 8)	L1MA4A|LINE|L1	103911	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
20034	chr1	185316901	185318580	+	0	NA	promoter-TSS (NM_006469)	promoter-TSS (NM_006469)	-497	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
59272	chr13	24217371	24218180	+	0	NA	intron (NM_153023, intron 1 of 11)	LTR33A|LTR|ERVL	36664	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
100015	chr17	57948921	57949180	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	6362	NM_001271875	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
102313	chr17	75363771	75364650	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	41468	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
142188	chr20	2901071	2901630	+	0	NA	intron (NM_001385311, intron 1 of 20)	intron (NM_001385311, intron 1 of 20)	27869	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
163035	chr3	49839001	49839930	+	0	NA	intron (NM_005879, intron 10 of 14)	intron (NM_005879, intron 10 of 14)	17099	NM_005879	10293		NM_005879	ENSG00000183763	TRAIP	RNF206|SCKL9|TRIP	TRAF interacting protein	protein-coding
125540	chr2	15155971	15156330	+	0	NA	Intergenic	Intergenic	405184	NM_015909	51594		NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	NBAS subunit of NRZ tethering complex	protein-coding
70649	chr14	102931121	102931580	+	0	NA	TTS (NM_030943)	TTS (NM_030943)	8687	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
95294	chr17	35530671	35532130	+	0	NA	intron (NM_001363830, intron 1 of 4)	intron (NM_001363830, intron 1 of 4)	6461	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
170559	chr3	186792501	186792900	+	0	NA	intron (NM_002916, intron 6 of 10)	intron (NM_002916, intron 6 of 10)	5087	NR_002588	619568		NR_002588	ENSG00000263776	SNORA4	ACA4	small nucleolar RNA, H/ACA box 4	snoRNA
16963	chr1	155941851	155941950	+	0	NA	exon (NM_181885, exon 1 of 1)	exon (NM_181885, exon 1 of 1)	262	NM_181885	339403		NM_181885	ENSG00000173080	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin family peptide/INSL5 receptor 4	protein-coding
66589	chr14	63512821	63513130	+	0	NA	intron (NM_006246, intron 2 of 13)	intron (NM_006246, intron 2 of 13)	-4737	NM_001282182	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
197748	chr6	87173801	87174430	+	0	NA	intron (NM_015021, intron 1 of 7)	intron (NM_015021, intron 1 of 7)	18550	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
134948	chr2	151673221	151673480	+	0	NA	intron (NM_001164508, intron 36 of 181)	intron (NM_001164508, intron 36 of 181)	61126	NM_001271208	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
120420	chr19	43934871	43936080	+	0	NA	promoter-TSS (NM_003425)	promoter-TSS (NM_003425)	-193	NM_003425	7596		NM_003425	ENSG00000124459	ZNF45	KOX5|ZNF13	zinc finger protein 45	protein-coding
232384	chr9	135964821	135965230	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-3652	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
13484	chr1	114715001	114715200	+	0	NA	intron (NM_002524, intron 2 of 6)	AluSx1|SINE|Alu	1671	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
67992	chr14	74941351	74942550	+	0	NA	3' UTR (NM_001293643, exon 7 of 7)	3' UTR (NM_001293643, exon 7 of 7)	13814	NM_001293643	5228		NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
67823	chr14	73844221	73844580	+	0	NA	Intergenic	AluJr|SINE|Alu	-7431	NM_001146154	145482		NM_152444	ENSG00000140043	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
196158	chr6	42531821	42532430	+	0	NA	Intergenic	Intergenic	-31897	NM_015255	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
125273	chr2	10447491	10450530	+	0	NA	promoter-TSS (NM_001287188)	promoter-TSS (NM_001287188)	-683	NM_001287188	4953		NM_002539	ENSG00000115758	ODC1	BABS|NEDBA|NEDBIA|ODC	ornithine decarboxylase 1	protein-coding
102019	chr17	74847951	74848250	+	0	NA	intron (NM_001278553, intron 7 of 11)	intron (NM_001278553, intron 7 of 11)	11784	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
77732	chr15	85720921	85721380	+	0	NA	intron (NM_007200, intron 23 of 36)	intron (NM_007200, intron 23 of 36)	37575	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
232017	chr9	133364001	133364450	+	0	NA	intron (NM_001280792, intron 4 of 4)	intron (NM_001280792, intron 4 of 4)	7675	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
211783	chr7	107581501	107581980	+	0	NA	intron (NR_163934, intron 2 of 8)	intron (NR_163934, intron 2 of 8)	1494	NR_163927	55973		NM_018844	ENSG00000075790	BCAP29	B29|BAP29	B cell receptor associated protein 29	protein-coding
205622	chr7	22499901	22500550	+	0	NA	promoter-TSS (NM_001164460)	promoter-TSS (NM_001164460)	-37	NM_001382447	256227		NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
34423	chr10	132407551	132408050	+	0	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	10600	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
213155	chr7	131548071	131548230	+	0	NA	intron (NM_005397, intron 1 of 7)	intron (NM_005397, intron 1 of 7)	8478	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
64017	chr14	22503121	22503830	+	0	NA	Intergenic	MIR|SINE|MIR	-20516	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
34375	chr10	132297721	132297980	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	9372	NM_001318879	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
50846	chr12	49124771	49125100	+	0	NA	Intergenic	AluYg6|SINE|Alu	6460	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
141872	chr20	674671	674830	+	0	NA	intron (NM_033129, intron 1 of 1)	intron (NM_033129, intron 1 of 1)	1052	NM_033129	85508		NM_033129	ENSG00000215397	SCRT2	ZNF898B	scratch family transcriptional repressor 2	protein-coding
131261	chr2	96049771	96050130	+	0	NA	Intergenic	Intergenic	-13976	NM_001321531	150763		NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding
74213	chr15	56208351	56208450	+	0	NA	intron (NM_001370561, intron 4 of 11)	L1MC1|LINE|L1	-18468	NM_001368074	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
27892	chr10	41878851	41879630	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	488805	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
112503	chr19	6467471	6468230	+	0	NA	TTS (NM_174881)	TTS (NM_174881)	3579	NM_174881	92359		NM_139161	ENSG00000130545	CRB3	-	crumbs cell polarity complex component 3	protein-coding
190492	chr5	180350871	180351950	+	0	NA	intron (NM_005110, intron 1 of 18)	intron (NM_005110, intron 1 of 18)	1926	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
231552	chr9	131480751	131481250	+	0	NA	intron (NM_013318, intron 19 of 31)	FLAM_C|SINE|Alu	-4665	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
55200	chr12	101678021	101678280	+	0	NA	exon (NM_002465, exon 28 of 32)	exon (NM_002465, exon 28 of 32)	-19490	NM_020244	56994		NM_020244	ENSG00000111666	CHPT1	CPT|CPT1	choline phosphotransferase 1	protein-coding
38011	chr11	35084701	35085000	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	53182	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
27923	chr10	41906421	41906700	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	461485	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
185109	chr5	119274721	119275250	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	6226	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
218713	chr8	58649771	58650230	+	0	NA	intron (NM_003580, intron 1 of 30)	intron (NM_003580, intron 1 of 30)	9407	NM_001144772	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
172555	chr4	2407971	2408130	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	10595	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
193285	chr6	30047371	30047530	+	0	NA	intron (NR_145416, intron 3 of 6)	MSTA|LTR|ERVL-MaLR	11282	NR_145417	80862		NR_026751	ENSG00000293508	POLR1HASP	C6orf12|HCG8|HCGVIII|HCGVIII-1|HTEX4|NCRNA00171|TCTEX4|ZNRD1-AS|ZNRD1-AS1|ZNRD1AS|ZNRD1AS1|ZNRD1ASP	POLR1H antisense, pseudogene	pseudo
114207	chr19	11434751	11436080	+	0	NA	promoter-TSS (NM_001379609)	promoter-TSS (NM_001379609)	158	NM_001289103	5589		NM_002743	ENSG00000130175	PRKCSH	80K-H|AGE-R2|G19P1|GIIB|GIIbeta|GluIIbeta|PCLD|PCLD1|PKCSH|PLD1|VASAP-60	PRKCSH beta subunit of glucosidase II	protein-coding
69430	chr14	94079751	94082000	+	0	NA	promoter-TSS (NM_145249).2	promoter-TSS (NM_145249).2	327	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
15507	chr1	150478121	150478880	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-8919	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
237119	chrX	106378671	106378930	+	0	NA	Intergenic	Intergenic	210495	NM_001171020	139221		NM_152423	ENSG00000157502	PWWP3B	MUM1L1	PWWP domain containing 3B	protein-coding
107117	chr18	35068471	35068900	+	0	NA	intron (NR_046177, intron 1 of 6)	L1MC5a|LINE|L1	27272	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
134660	chr2	144459151	144460430	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-59824	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
214331	chr7	149290771	149291380	+	0	NA	intron (NR_036573, intron 5 of 10)	intron (NR_036573, intron 5 of 10)	5794	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
202283	chr6	157139451	157139780	+	0	NA	intron (NM_001371656, intron 9 of 20)	intron (NM_001371656, intron 9 of 20)	103188	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
39267	chr11	57761621	57761880	+	0	NA	promoter-TSS (NM_001085462)	promoter-TSS (NM_001085462)	-52	NM_001206883	1500		NM_001331	ENSG00000198561	CTNND1	BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
215890	chr8	8030321	8030850	+	0	NA	Intergenic	Intergenic	-33064	NM_001037380	641517		NM_001037380	ENSG00000206034	DEFB109B	DEF109P1B|DEFB109|DEFB109P1B|HBD9	defensin beta 109B	protein-coding
234166	chrX	11726731	11726850	+	0	NA	Intergenic	Intergenic	-31369	NM_001282174	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
68204	chr14	76866851	76867150	+	0	NA	intron (NR_169573, intron 11 of 12)	(TG)n|Simple_repeat|Simple_repeat	40592	NR_169572	145497		NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
84749	chr16	30959351	30959680	+	0	NA	intron (NM_014712, intron 3 of 18)	intron (NM_014712, intron 3 of 18)	1761	NM_014712	9739		NM_014712	ENSG00000099381	SETD1A	EPEDD|EPEO2|KMT2F|NEDSID|Set1|Set1A	SET domain containing 1A, histone lysine methyltransferase	protein-coding
59625	chr13	27980351	27980650	+	0	NA	intron (NM_001105577, intron 1 of 1)	CpG	8193	NM_001105577	646625		NM_001105577	ENSG00000183463	URAD	PRHOXNB	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase	protein-coding
60917	chr13	46183271	46183600	+	0	NA	Intergenic	Intergenic	-1258	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
85776	chr16	56936051	56936450	+	0	NA	intron (NM_014685, intron 3 of 7)	intron (NM_014685, intron 3 of 7)	4108	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
21245	chr1	204359821	204360480	+	0	NA	promoter-TSS (NM_014935)	promoter-TSS (NM_014935)	-221	NM_014935	22874		NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
211684	chr7	106598571	106599250	+	0	NA	Intergenic	Intergenic	62248	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
224051	chr9	3517721	3518130	+	0	NA	intron (NM_134428, intron 1 of 17)	Tigger3b|DNA|TcMar-Tigger	8076	NM_002919	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
228911	chr9	113063571	113064430	+	0	NA	Intergenic	Intergenic	-7276	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
214004	chr7	143215071	143215500	+	0	NA	intron (NM_001363538, intron 8 of 11)	intron (NM_001363538, intron 8 of 11)	-6752	NM_176882	259286		NM_176882	ENSG00000221937	TAS2R40	GPR60|T2R40|T2R58	taste 2 receptor member 40	protein-coding
116318	chr19	17805121	17805780	+	0	NA	intron (NM_014256, intron 1 of 2)	L2b|LINE|L2	10312	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
202912	chr6	160070101	160070300	+	0	NA	intron (NM_000876, intron 31 of 47)	intron (NM_000876, intron 31 of 47)	-22882	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
156398	chr22	41115571	41115730	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluJo|SINE|Alu	23058	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
6049	chr1	27130671	27131530	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	24025	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
97896	chr17	45114421	45114880	+	0	NA	promoter-TSS (NR_106842)	promoter-TSS (NR_106842)	-217	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
35163	chr11	766251	766780	+	0	NA	TTS (NM_001318822)	TTS (NM_001318822)	10972	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
134589	chr2	144268201	144268400	+	0	NA	intron (NM_001376309, intron 1 of 12)	MSTB1|LTR|ERVL-MaLR	-19601	NR_148872	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
26651	chr10	22575821	22576080	+	0	NA	intron (NM_001330062, intron 4 of 9)	AluSg7|SINE|Alu	-138021	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
204587	chr7	5296221	5298000	+	0	NA	exon (NM_001300847, exon 7 of 11)	exon (NM_001300847, exon 7 of 11)	14167	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
167969	chr3	136693221	136693480	+	0	NA	intron (NM_005862, intron 1 of 33)	intron (NM_005862, intron 1 of 33)	59028	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
168056	chr3	136947501	136947700	+	0	NA	intron (NM_001291999, intron 3 of 3)	MER102b|DNA|hAT-Charlie	-10383	NM_144717	53833		NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding
132214	chr2	102227271	102228300	+	0	NA	intron (NM_003854, intron 9 of 11)	intron (NM_003854, intron 9 of 11)	40471	NM_001351446	8808		NM_003854	ENSG00000115598	IL1RL2	IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2	interleukin 1 receptor like 2	protein-coding
164916	chr3	71150371	71150930	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	-18453	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
64834	chr14	35121121	35122200	+	0	NA	promoter-TSS (NM_014672)	promoter-TSS (NM_014672)	882	NM_001305155	55012		NM_017917	ENSG00000092020	PPP2R3C	C14orf10|G4-1|G5pr|GDRM|MEGD|SPGF36	protein phosphatase 2 regulatory subunit B''gamma	protein-coding
94570	chr17	29625801	29626000	+	0	NA	TTS (NM_001282129)	TTS (NM_001282129)	-4477	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
43012	chr11	73984951	73985050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1798	NM_001381944	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
221981	chr8	129993271	129996800	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	13418	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
54228	chr12	80086171	80086330	+	0	NA	Intergenic	Intergenic	-13287	NM_001378609	283310		NM_173591	ENSG00000165899	OTOGL	C12orf64|DFNB84B	otogelin like	protein-coding
218614	chr8	56070251	56070950	+	0	NA	intron (NM_001146227, intron 4 of 5)	AluJo|SINE|Alu	3301	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
40107	chr11	62810171	62810530	+	0	NA	intron (NM_001244666, intron 10 of 10)	AluJr|SINE|Alu	-4910	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
161438	chr3	42023371	42024030	+	0	NA	Intergenic	L2|LINE|L2	-61597	NR_136342	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
126486	chr2	28396351	28396450	+	0	NA	intron (NM_005253, intron 1 of 3)	intron (NM_005253, intron 1 of 3)	-1728	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
102980	chr17	76724001	76724250	+	0	NA	intron (NM_015167, intron 2 of 5)	intron (NM_015167, intron 2 of 5)	-1916	NM_001378349	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
168635	chr3	149814951	149815050	+	0	NA	intron (NM_001378285, intron 2 of 10)	intron (NM_001378285, intron 2 of 10)	1785	NR_165474	11342		NM_007282	ENSG00000082996	RNF13	DEE73|EIEE73|RZF	ring finger protein 13	protein-coding
7419	chr1	32957451	32958080	+	0	NA	intron (NM_001127361, intron 1 of 8)	AluSz|SINE|Alu	7044	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
79382	chr16	653521	654830	+	0	NA	intron (NM_145294, intron 13 of 40)	intron (NM_145294, intron 13 of 40)	4810	NM_145294	197335		NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19|POC16	WD repeat domain 90	protein-coding
228209	chr9	97850271	97850430	+	0	NA	intron (NR_147055, intron 1 of 10)	intron (NR_147055, intron 1 of 10)	2730	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
169091	chr3	154318421	154319080	+	0	NA	intron (NM_020865, intron 1 of 24)	intron (NM_020865, intron 1 of 24)	5737	NM_020865	170506		NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding
31077	chr10	89084001	89084880	+	0	NA	Intergenic	AluSc|SINE|Alu	-21029	NR_039827	100616192		NR_039827	ENSG00000265375	MIR4679-2	-	microRNA 4679-2	ncRNA
61315	chr13	50359821	50360280	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	167399	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
155882	chr22	39514021	39515030	+	0	NA	TTS (NR_130790)	TTS (NR_130790)	-6034	NM_001675	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
190504	chr5	180432601	180433600	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-61279	NM_001370472	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
239358	chrY	19580851	19581250	+	0	NA	intron (NR_045128, intron 1 of 9)	L1PA5|LINE|L1	13692	NR_045129	246126		NM_001005852	ENSG00000291033	TXLNGY	CYorf15A|CYorf15B|TXLNG2P	taxilin gamma Y-linked (pseudogene)	pseudo
68046	chr14	75231501	75231700	+	0	NA	Intergenic	Intergenic	-47228	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
40520	chr11	64287201	64287400	+	0	NA	intron (NR_165394, intron 3 of 5)	intron (NR_165394, intron 3 of 5)	1452	NM_001378089	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
119749	chr19	41280571	41280730	+	0	NA	intron (NM_144732, intron 6 of 14)	intron (NM_144732, intron 6 of 14)	15569	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
58934	chr13	19766021	19766330	+	0	NA	intron (NM_001354909, intron 2 of 8)	AluSz|SINE|Alu	16770	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
15120	chr1	148668901	148669450	+	0	NA	intron (NM_001364007, intron 1 of 4)	intron (NM_001364007, intron 1 of 4)	10571	NM_001364007	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
235720	chrX	48909401	48910180	+	0	NA	intron (NM_001282649, intron 1 of 2)	intron (NM_001282649, intron 1 of 2)	1856	NM_005660	7355		NM_005660	ENSG00000102100	SLC35A2	CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL	solute carrier family 35 member A2	protein-coding
9242	chr1	46132481	46133930	+	0	NA	promoter-TSS (NR_125987)	promoter-TSS (NR_125987)	-166	NR_125987	101929626		NR_125987	ENSG00000227857	LOC101929626	-	uncharacterized LOC101929626	ncRNA
180024	chr5	1047301	1047700	+	0	NA	Intergenic	Intergenic	15474	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
197067	chr6	53725721	53726450	+	0	NA	Intergenic	Intergenic	-60329	NM_001003760	401265		NM_001003760	ENSG00000124743	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch like family member 31	protein-coding
153122	chr22	23713571	23713730	+	0	NA	intron (NR_024448, intron 3 of 11)	AluJr|SINE|Alu	3773	NR_024448	91316		NR_024448	ENSG00000228315	GUSBP11	-	GUSB pseudogene 11	pseudo
124784	chr2	7436021	7436600	+	0	NA	intron (NR_038432, intron 4 of 5)	intron (NR_038432, intron 4 of 5)	15049	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
149154	chr21	17802551	17802950	+	0	NA	intron (NM_017447, intron 2 of 4)	intron (NM_017447, intron 2 of 4)	-10241	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
79518	chr16	804151	804400	+	0	NA	Intergenic	Intergenic	-1168	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
73402	chr15	42726101	42726300	+	0	NA	intron (NM_138477, intron 24 of 27)	intron (NM_138477, intron 24 of 27)	10928	NM_138477	146059		NM_138477	ENSG00000140326	CDAN1	CDA1|CDAI|CDAN1A|DLT|PRO1295	codanin 1	protein-coding
14108	chr1	120925621	120925880	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-11636	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
125018	chr2	9573851	9574180	+	0	NA	Intergenic	AluJr|SINE|Alu	-18185	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
906	chr1	1685601	1686000	+	0	NA	intron (NM_001110781, intron 1 of 8)	intron (NM_001110781, intron 1 of 8)	6995	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
47282	chr12	1629601	1630850	+	0	NA	intron (NM_032642, intron 1 of 4)	CpG	994	NM_032642	81029		NM_030775	ENSG00000111186	WNT5B	-	Wnt family member 5B	protein-coding
14460	chr1	144439801	144440180	+	0	NA	exon (NM_001170755, exon 10 of 24)	exon (NM_001170755, exon 10 of 24)	21679	NM_001385428	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
18231	chr1	161037001	161037200	+	0	NA	TTS (NM_001113207)	TTS (NM_001113207)	1864	NM_001113207	100131187		NM_001113205	ENSG00000215845	TSTD1	KAT|TST	thiosulfate sulfurtransferase like domain containing 1	protein-coding
171335	chr3	196019651	196019900	+	0	NA	Intergenic	MIRb|SINE|MIR	-29496	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
225970	chr9	41186401	41187450	+	0	NA	intron (NM_001286836, intron 1 of 2)	intron (NM_001286836, intron 1 of 2)	2382	NM_001378116	445571		NM_201453	ENSG00000196873	ZNG1C	CBWD3|bA561O23.1	Zn regulated GTPase metalloprotein activator 1C	protein-coding
59523	chr13	27166271	27166630	+	0	NA	intron (NR_046547, intron 2 of 2)	intron (NR_046547, intron 2 of 2)	5361	NM_182488	219333		NM_182488	ENSG00000152484	USP12	UBH1|USP12L1	ubiquitin specific peptidase 12	protein-coding
213387	chr7	135974701	135975380	+	0	NA	intron (NM_001128619, intron 1 of 3)	intron (NM_001128619, intron 1 of 3)	2319	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
191706	chr6	13669571	13670080	+	0	NA	intron (NM_005493, intron 2 of 13)	AluJb|SINE|Alu	42010	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
97450	chr17	43662101	43662930	+	0	NA	promoter-TSS (NM_001040002)	promoter-TSS (NM_001040002)	-593	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
209175	chr7	75368201	75368400	+	0	NA	TTS (NR_040583)	TTS (NR_040583)	9100	NR_040583	54441		NM_018991	ENSG00000290951	STAG3L1	STAG3L1P|STAG3L2|STAG3L3	STAG3 cohesin complex component like 1 (pseudogene)	pseudo
20859	chr1	201956571	201956830	+	0	NA	intron (NM_006335, intron 1 of 5)	AluSx4|SINE|Alu	1197	NM_006335	10440		NM_006335	ENSG00000134375	TIMM17A	TIM17|TIM17A	translocase of inner mitochondrial membrane 17A	protein-coding
104762	chr17	81695871	81697030	+	0	NA	exon (NM_004712, exon 16 of 22)	exon (NM_004712, exon 16 of 22)	2693	NR_106844	102465471		NR_106844	ENSG00000277784	MIR6786	hsa-mir-6786	microRNA 6786	ncRNA
121003	chr19	45774371	45774530	+	0	NA	intron (NM_001081560, intron 9 of 14)	AluY|SINE|Alu	5169	NM_001288765	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
192169	chr6	17603151	17603930	+	0	NA	intron (NM_016255, intron 2 of 4)	L2c|LINE|L2	3238	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
234578	chrX	19761551	19762200	+	0	NA	intron (NM_001353892, intron 2 of 17)	L1ME4b|LINE|L1	37898	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
203816	chr7	1368721	1369830	+	0	NA	Intergenic	CpG	90195	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
19864	chr1	183470951	183471500	+	0	NA	non-coding (NR_040063, exon 1 of 5)	non-coding (NR_040063, exon 1 of 5)	757	NR_040063	284649		NR_040063	ENSG00000232860	SMG7-AS1	DKFZP564C196	SMG7 antisense RNA 1	ncRNA
14495	chr1	144553171	144553330	+	0	NA	Intergenic	AluSz|SINE|Alu	-1307	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
14801	chr1	146254571	146254730	+	0	NA	Intergenic	Intergenic	-25618	NM_001364006	388677		NM_203458	ENSG00000264343	NOTCH2NLA	N2N|NOTCH2NL	notch 2 N-terminal like A	protein-coding
124683	chr2	3480671	3480830	+	0	NA	Intergenic	Intergenic	36997	NM_001306077	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
136876	chr2	188605751	188606430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	184033	NR_161166	116093		NM_052952		DIRC1	-	disrupted in renal carcinoma 1	ncRNA
144858	chr20	36898901	36899700	+	0	NA	intron (NM_001363733, intron 13 of 15)	AluSz6|SINE|Alu	23162	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
138550	chr2	207541171	207541650	+	0	NA	intron (NR_163946, intron 1 of 8)	Tigger3|DNA|TcMar-Tigger	11448	NM_134442	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123350	chr19	53874511	53876080	+	0	NA	3' UTR (NM_001020821, exon 3 of 3)	3' UTR (NM_001020821, exon 3 of 3)	5904	NM_001020818	91663		NM_138373	ENSG00000179820	MYADM	SB135	myeloid associated differentiation marker	protein-coding
232332	chr9	135343901	135344200	+	0	NA	exon (NM_173520, exon 2 of 3)	exon (NM_173520, exon 2 of 3)	801	NM_173520	157927		NM_173520	ENSG00000178243	LINC02907	C9orf62	long intergenic non-protein coding RNA 2907	ncRNA
100154	chr17	58533921	58534180	+	0	NA	intron (NM_001368771, intron 2 of 13)	intron (NM_001368771, intron 2 of 13)	-1966	NM_080416	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
203531	chr7	831851	833030	+	0	NA	promoter-TSS (NM_001130965)	promoter-TSS (NM_001130965)	-36	NM_001130965	23353		NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
53644	chr12	68240621	68241650	+	0	NA	Intergenic	L2a|LINE|L2	12469	NM_020525	50616		NM_020525	ENSG00000127318	IL22	IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18	interleukin 22	protein-coding
113030	chr19	7939301	7939700	+	0	NA	intron (NM_006351, intron 2 of 12)	AluSx1|SINE|Alu	4166	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
65930	chr14	55339521	55340250	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	67731	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
83996	chr16	29449251	29449600	+	0	NA	promoter-TSS (NR_002454)	promoter-TSS (NR_002454)	80	NR_002454	606724		NR_002454		LOC606724	-	coronin 1A pseudogene	pseudo
82931	chr16	21835311	21836000	+	0	NA	exon (NM_130464, exon 11 of 12)	exon (NM_130464, exon 11 of 12)	-15170	NM_001301064	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
151026	chr21	44510421	44511330	+	0	NA	intron (NR_103707, intron 6 of 6)	CpG	4831	NR_103707	54082		NR_103707	ENSG00000235890	TSPEAR-AS1	C21orf31	TSPEAR antisense RNA 1	ncRNA
75790	chr15	68816971	68819360	+	0	NA	intron (NM_006305, intron 1 of 6)	CpG	2730	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
156854	chr22	42031221	42031480	+	0	NA	Intergenic	Intergenic	32562	NM_152613	164684		NM_152613	ENSG00000183066	WBP2NL	GRAMD7|PAWP	WBP2 N-terminal like	protein-coding
51062	chr12	49829671	49829830	+	0	NA	intron (NR_027501, intron 2 of 2)	MamRTE1|LINE|RTE-BovB	1207	NR_027501	100286844		NR_027499	ENSG00000258057	BCDIN3D-AS1	-	BCDIN3D antisense RNA 1	ncRNA
25830	chr10	11213051	11213480	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	48235	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
81422	chr16	8797301	8798880	+	0	NA	promoter-TSS (NM_015421)	promoter-TSS (NM_015421)	251	NM_000303	5373		NM_000303	ENSG00000140650	PMM2	CDG1|CDG1a|CDGS|PMI|PMI1|PMM 2	phosphomannomutase 2	protein-coding
163906	chr3	52531721	52531980	+	0	NA	intron (NM_022908, intron 1 of 13)	MIRb|SINE|MIR	2007	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
207255	chr7	43868851	43870050	+	0	NA	promoter-TSS (NM_032014)	promoter-TSS (NM_032014)	67	NM_032014	64951		NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
190165	chr5	178145721	178146430	+	0	NA	intron (NM_022762, intron 7 of 10)	intron (NM_022762, intron 7 of 10)	7810	NM_017838	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
36920	chr11	10803471	10803930	+	0	NA	intron (NM_001172705, intron 8 of 21)	intron (NM_001172705, intron 8 of 21)	-2092	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
1472	chr1	2690601	2690800	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-57684	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
75765	chr15	68577751	68578050	+	0	NA	intron (NM_001324014, intron 2 of 12)	intron (NM_001324014, intron 2 of 12)	-1093	NM_006091	10391		NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
187641	chr5	143011671	143011900	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-142875	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
56508	chr12	116357251	116357850	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	70768	NR_039683	100616309		NR_039683	ENSG00000264037	MIR4472-2	-	microRNA 4472-2	ncRNA
213014	chr7	131016151	131016250	+	0	NA	intron (NR_109850, intron 3 of 5)	AluJr|SINE|Alu	90830	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
176410	chr4	89110601	89112130	+	0	NA	promoter-TSS (NM_145715)	promoter-TSS (NM_145715)	-168	NM_145715	166815		NM_145715	ENSG00000180346	TIGD2	HEL106	tigger transposable element derived 2	protein-coding
154645	chr22	36332101	36332800	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-45543	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
60959	chr13	46577751	46578400	+	0	NA	intron (NM_015116, intron 1 of 18)	intron (NM_015116, intron 1 of 18)	24905	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
69331	chr14	93788521	93788780	+	0	NA	promoter-TSS (NM_178013)	promoter-TSS (NM_178013)	-165	NM_178013	145270		NM_178004	ENSG00000175785	PRIMA1	PRIMA	proline rich membrane anchor 1	protein-coding
161867	chr3	45884271	45885030	+	0	NA	intron (NM_001276379, intron 2 of 9)	intron (NM_001276379, intron 2 of 9)	-1854	NM_001256369	10803		NM_006641	ENSG00000173585	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	C-C motif chemokine receptor 9	protein-coding
219724	chr8	81027821	81028530	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	83893	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
121309	chr19	46744071	46744530	+	0	NA	intron (NM_001039877, intron 1 of 17)	intron (NM_001039877, intron 1 of 17)	-1757	NM_024301	79147		NM_024301	ENSG00000181027	FKRP	FKTR|LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
163656	chr3	52196901	52197100	+	0	NA	Intergenic	Intergenic	-1083	NM_199166	211		NM_000688	ENSG00000023330	ALAS1	ALAS|ALAS-H|ALAS3|ALASH|MIG4	5'-aminolevulinate synthase 1	protein-coding
76148	chr15	72637921	72638280	+	0	NA	Intergenic	AluSx|SINE|Alu	-1145	NR_135685	102723640		NR_135684	ENSG00000259783	LINC02259	-	long intergenic non-protein coding RNA 2259	ncRNA
116279	chr19	17722771	17722930	+	0	NA	intron (NM_001308363, intron 2 of 6)	GA-rich|Low_complexity|Low_complexity	2694	NM_001308363	55201		NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule associated protein 1S	protein-coding
206341	chr7	30330351	30331450	+	0	NA	intron (NM_147128, intron 2 of 4)	Kanga11a|DNA|TcMar-Tc2	-39150	NR_002186	222161		NM_152747		DKFZP586I1420	-	uncharacterized protein DKFZp586I1420	pseudo
107471	chr18	47020571	47021130	+	0	NA	intron (NM_001353908, intron 3 of 11)	intron (NM_001353908, intron 3 of 11)	14767	NM_016427	51224		NM_016427	ENSG00000206181	ELOA2	HsT832|TCEB3B|TCEB3L	elongin A2	protein-coding
52843	chr12	57091571	57092330	+	0	NA	exon (NM_001330305, exon 2 of 6)	exon (NM_001330305, exon 2 of 6)	2836	NM_005967	4665		NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding
92760	chr17	15341551	15341650	+	0	NA	promoter-TSS (NM_031898)	promoter-TSS (NM_031898)	-3	NM_031898	64518		NM_031898	ENSG00000125409	TEKT3	SPGF81	tektin 3	protein-coding
113217	chr19	8466701	8466900	+	0	NA	intron (NM_031203, intron 8 of 16)	AluSx1|SINE|Alu	21825	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
153297	chr22	24177251	24177850	+	0	NA	exon (NM_001199281, exon 36 of 37)	exon (NM_001199281, exon 36 of 37)	-3937	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
211632	chr7	106108821	106109630	+	0	NA	intron (NR_167730, intron 1 of 5)	Charlie1a|DNA|hAT-Charlie	3087	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
37506	chr11	18425701	18425900	+	0	NA	intron (NM_017448, intron 3 of 7)	AluY|SINE|Alu	13482	NM_017448	3948		NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
33704	chr10	120979321	120979780	+	0	NA	Intergenic	CpG	128188	NM_018117	55717		NM_018117	ENSG00000120008	WDR11	BRWD2|DR11|HH14|SRI1|WDR15	WD repeat domain 11	protein-coding
28228	chr10	45420371	45420900	+	0	NA	intron (NM_001256153, intron 4 of 13).2	intron (NM_001256153, intron 4 of 13).2	32486	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
198860	chr6	109380771	109384100	+	0	NA	promoter-TSS (NM_006016)	promoter-TSS (NM_006016)	32	NM_001142403	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
180942	chr5	34927771	34927930	+	0	NA	Intergenic	AluJo|SINE|Alu	-1709	NM_194283	134218		NM_194283	ENSG00000168724	DNAJC21	BMFS3|DNAJA5|GS3|JJJ1	DnaJ heat shock protein family (Hsp40) member C21	protein-coding
141245	chr2	239718201	239718600	+	0	NA	Intergenic	Intergenic	-44460	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
219623	chr8	80125221	80125480	+	0	NA	intron (NR_105035, intron 1 of 6)	AluJr4|SINE|Alu	-44519	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
92795	chr17	15965621	15965880	+	0	NA	intron (NM_000676, intron 1 of 1)	intron (NM_000676, intron 1 of 1)	20833	NM_000676	136		NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
30299	chr10	75231671	75231980	+	0	NA	TTS (NM_001184823)	TTS (NM_001184823)	4132	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
76841	chr15	77496821	77497380	+	0	NA	Intergenic	Intergenic	-28495	NR_135692	101929457		NR_135692	ENSG00000259362	LOC101929457	-	uncharacterized LOC101929457	ncRNA
40671	chr11	64754651	64755080	+	0	NA	intron (NM_001164716, intron 5 of 17)	intron (NM_001164716, intron 5 of 17)	5109	NM_005609	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
177583	chr4	120063351	120063650	+	0	NA	intron (NM_002358, intron 2 of 4)	MER58C|DNA|hAT-Charlie	3348	NM_002358	4085		NM_002358	ENSG00000164109	MAD2L1	HSMAD2|MAD2	mitotic arrest deficient 2 like 1	protein-coding
64059	chr14	22547871	22548880	+	0	NA	Intergenic	Intergenic	8687	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
147274	chr20	57482271	57482430	+	0	NA	Intergenic	MIRb|SINE|MIR	42517	NM_001269052	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
132933	chr2	111441701	111442080	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	53271	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
195138	chr6	35686421	35686830	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	2290	NM_001145776	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
211555	chr7	105533821	105534430	+	0	NA	intron (NR_144478, intron 2 of 13)	AluSx1|SINE|Alu	1924	NM_021930	60561		NM_021930	ENSG00000135249	RINT1	ILFS3|RINT-1	RAD50 interactor 1	protein-coding
155750	chr22	39179471	39179830	+	0	NA	Intergenic	Intergenic	-26970	NM_175709	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
2510	chr1	9699621	9699880	+	0	NA	intron (NM_001350234, intron 2 of 23)	AluSq2|SINE|Alu	8283	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
233152	chr9	137170601	137170800	+	0	NA	promoter-TSS (NM_001013653)	promoter-TSS (NM_001013653)	-649	NM_001013653	389816		NM_001013653	ENSG00000184709	LRRC26	CAPC|bA350O14.10	leucine rich repeat containing 26	protein-coding
122130	chr19	48838621	48839380	+	0	NA	intron (NM_001161354, intron 15 of 16)	intron (NM_001161354, intron 15 of 16)	-2509	NM_016246	51171		NM_016246	ENSG00000087076	HSD17B14	DHRS10|SDR47C1|retSDR3	hydroxysteroid 17-beta dehydrogenase 14	protein-coding
93954	chr17	21422101	21422300	+	0	NA	Intergenic	L2b|LINE|L2	45843	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
142968	chr20	19937171	19937330	+	0	NA	intron (NM_001242581, intron 3 of 11)	intron (NM_001242581, intron 3 of 11)	50729	NM_001242581	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
14286	chr1	143783471	143783630	+	0	NA	Intergenic	MER49|LTR|ERV1	-8945	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
136849	chr2	186426721	186426980	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-59410	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
162314	chr3	47424271	47424830	+	0	NA	intron (NM_001320044, intron 5 of 19)	intron (NM_001320044, intron 5 of 19)	43529	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
206847	chr7	37377251	37377750	+	0	NA	intron (NM_001206480, intron 1 of 21)	MamGypLTR3a|LTR|Gypsy	-23832	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
192237	chr6	19765221	19765550	+	0	NA	intron (NR_134651, intron 2 of 3)	L1HS|LINE|L1	39374	NR_134650	100506885		NR_134649	ENSG00000228412	LNC-LBCS	LBCS	lncRNA bladder and prostate cancer suppressor, hnRNPK interacting	ncRNA
71814	chr15	21970551	21970650	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	19358	NR_128721	103504741		NR_128721	ENSG00000264902	MIR5701-3	hsa-mir-5701-3	microRNA 5701-3	ncRNA
222636	chr8	141121871	141122030	+	0	NA	Intergenic	Intergenic	-6639	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
7744	chr1	36154321	36154580	+	0	NA	intron (NM_001270895, intron 1 of 4)	intron (NM_001270895, intron 1 of 4)	1603	NM_001270895	27095		NM_014408	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex subunit 3	protein-coding
99749	chr17	50947251	50947350	+	0	NA	Intergenic	Intergenic	-79322	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
124298	chr19	57887171	57887730	+	0	NA	intron (NM_001144989, intron 1 of 2)	LTR62|LTR|ERVL	1587	NM_001144989	730051		NM_001144989	ENSG00000204514	ZNF814	-	zinc finger protein 814	protein-coding
178661	chr4	152476851	152476950	+	0	NA	intron (NM_001349798, intron 2 of 13)	LTR40b|LTR|ERVL	12516	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
170100	chr3	183102551	183102650	+	0	NA	Intergenic	L1ME4b|LINE|L1	-3013	NR_120639	56922		NM_020166	ENSG00000078070	MCCC1	MCC-B|MCCA|MCCCalpha	methylcrotonyl-CoA carboxylase subunit 1	protein-coding
89570	chr16	89261001	89261200	+	0	NA	Intergenic	AluSg|SINE|Alu	-35028	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
172783	chr4	2941421	2941680	+	0	NA	intron (NM_001291978, intron 15 of 17)	intron (NM_001291978, intron 15 of 17)	6004	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
159328	chr3	13043421	13043680	+	0	NA	intron (NM_001134382, intron 1 of 13)	L2a|LINE|L2	29879	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
145751	chr20	45105471	45105630	+	0	NA	Intergenic	Intergenic	-4423	NM_001322799	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
194533	chr6	33309071	33309580	+	0	NA	intron (NM_172209, intron 2 of 6).2	AluSp|SINE|Alu	4753	NM_003190	6892		NM_003190	ENSG00000231925	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein	protein-coding
151277	chr21	45470801	45471230	+	0	NA	intron (NM_001379500, intron 3 of 41)	CpG	-7251	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
189682	chr5	176404651	176404950	+	0	NA	TTS (NM_001364127)	TTS (NM_001364127)	6023	NM_001364126	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
14073	chr1	120843871	120845470	+	0	NA	Intergenic	CpG	6315	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
225699	chr9	36574971	36575130	+	0	NA	intron (NM_001256693, intron 1 of 15)	AluSg7|SINE|Alu	2155	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
128765	chr2	62208521	62209200	+	0	NA	intron (NM_006577, intron 1 of 1)	intron (NM_006577, intron 1 of 1)	3034	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
11568	chr1	91511351	91511700	+	0	NA	intron (NM_001134420, intron 4 of 11)	intron (NM_001134420, intron 4 of 11)	10417	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
178805	chr4	153503851	153504150	+	0	NA	intron (NM_015196, intron 3 of 34)	AluY|SINE|Alu	37640	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
144677	chr20	36431771	36431930	+	0	NA	exon (NM_014902, exon 3 of 13)	exon (NM_014902, exon 3 of 13)	-29618	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
40869	chr11	65097851	65098150	+	0	NA	intron (NR_073519, intron 2 of 9)	AluSx1|SINE|Alu	1786	NR_073519	738		NM_013265	ENSG00000149823	VPS51	ANG2|ANG3|C11orf2|C11orf3|FFR|PCH13	VPS51 subunit of GARP complex	protein-coding
118853	chr19	38641621	38642480	+	0	NA	Intergenic	Intergenic	-5599	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
119776	chr19	41308201	41309380	+	0	NA	Intergenic	Intergenic	-1382	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
161361	chr3	40462101	40462680	+	0	NA	3' UTR (NM_003973, exon 6 of 6)	3' UTR (NM_003973, exon 6 of 6)	5051	NM_001034996	9045		NM_003973	ENSG00000188846	RPL14	CAG-ISL-7|CTG-B33|L14|RL14|eL14|hRL14	ribosomal protein L14	protein-coding
71037	chr14	104782871	104783200	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	10566	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
61233	chr13	49759551	49760250	+	0	NA	intron (NM_002267, intron 1 of 16)	L1MC5|LINE|L1	32782	NM_002267	3839		NM_002267	ENSG00000102753	KPNA3	IPOA4|SPG88|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
62205	chr13	98447171	98447330	+	0	NA	3' UTR (NM_001032296, exon 11 of 11)	3' UTR (NM_001032296, exon 11 of 11)	74875	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
16002	chr1	151996801	151997430	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3256	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
17145	chr1	156191601	156191800	+	0	NA	Intergenic	L1MB5|LINE|L1	-2404	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
172684	chr4	2748201	2748750	+	0	NA	intron (NM_001292016, intron 1 of 4)	AluY|SINE|Alu	7861	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
227389	chr9	89519001	89519200	+	0	NA	Intergenic	Intergenic	-20987	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
15731	chr1	151057201	151058500	+	0	NA	intron (NM_001038707, intron 1 of 5)	intron (NM_001038707, intron 1 of 5)	1772	NM_020239	56882		NM_020239	ENSG00000197622	CDC42SE1	SCIP1|SPEC1	CDC42 small effector 1	protein-coding
11739	chr1	91948201	91949500	+	0	NA	promoter-TSS (NM_207189)	promoter-TSS (NM_207189)	-521	NM_001242810	676		NM_001726	ENSG00000137948	BRDT	BRD6|CT9|SPGF21	bromodomain testis associated	protein-coding
10973	chr1	84298301	84299630	+	0	NA	intron (NM_001010971, intron 1 of 3)	CpG	427	NM_001010971	148418		NM_001010971	ENSG00000203943	SAMD13	DJL|HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding
213881	chr7	142412571	142413100	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-61692	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
110917	chr19	2775351	2776430	+	0	NA	intron (NM_003021, intron 1 of 11)	intron (NM_003021, intron 1 of 11)	7383	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
150997	chr21	44360221	44360480	+	0	NA	intron (NM_001320350, intron 2 of 32)	intron (NM_001320350, intron 2 of 32)	6749	NM_001320350	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
24700	chr1	247324621	247325080	+	0	NA	intron (NM_032752, intron 5 of 9)	intron (NM_032752, intron 5 of 9)	7017	NM_032752	84838		NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
13658	chr1	116553401	116553880	+	0	NA	intron (NR_026665, intron 1 of 5)	L2c|LINE|L2	6471	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
234986	chrX	39626871	39627030	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-34266	NR_037501	100500822		NR_037501	ENSG00000263730	MIR3937	-	microRNA 3937	ncRNA
145939	chr20	46029201	46030000	+	0	NA	intron (NM_020708, intron 1 of 25)	CpG	385	NM_020708	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
25183	chr10	5551171	5551330	+	0	NA	Intergenic	Intergenic	-25004	NR_120496	100132159		NR_120496		CALML3-AS1	-	CALML3 antisense RNA 1	ncRNA
52419	chr12	55780601	55781200	+	0	NA	intron (NM_033082, intron 9 of 10)	MER44B|DNA|TcMar-Tigger	36824	NM_033082	84324		NM_033082	ENSG00000205323	SARNP	CIP29|HCC1|HSPC316|THO1	SAP domain containing ribonucleoprotein	protein-coding
43243	chr11	75510101	75510300	+	0	NA	intron (NM_030792, intron 1 of 16)	intron (NM_030792, intron 1 of 16)	15373	NM_001351168	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
183242	chr5	76392971	76394180	+	0	NA	Intergenic	Intergenic	-9710	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
97818	chr17	44865121	44865630	+	0	NA	intron (NM_001258354, intron 13 of 27)	intron (NM_001258354, intron 13 of 27)	17492	NM_016438	51751		NM_016438	ENSG00000131097	HIGD1B	CLST11240|CLST11240-15	HIG1 hypoxia inducible domain family member 1B	protein-coding
67699	chr14	73247351	73248050	+	0	NA	intron (NM_173462, intron 5 of 25)	intron (NM_173462, intron 5 of 25)	-1699	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
152641	chr22	21518521	21519380	+	0	NA	Intergenic	L1M5|LINE|L1	-1459	NR_003700	375133		NR_003700	ENSG00000293427	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
78265	chr15	90845101	90845500	+	0	NA	Intergenic	Intergenic	-23288	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
167189	chr3	128175671	128175830	+	0	NA	intron (NM_021937, intron 1 of 6)	intron (NM_021937, intron 1 of 6)	-21836	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
235173	chrX	41184451	41184550	+	0	NA	exon (NM_001039591, exon 23 of 45)	exon (NM_001039591, exon 23 of 45)	-91239	NR_135616	105373185		NR_135616	ENSG00000223714	LINC02601	-	long intergenic non-protein coding RNA 2601	ncRNA
128839	chr2	63692021	63692280	+	0	NA	Intergenic	Intergenic	102999	NM_001199111	4190		NM_005917	ENSG00000014641	MDH1	DEE88|EIEE88|HEL-S-32|KAR|MDH-s|MDHA|MGC:1375|MOR2	malate dehydrogenase 1	protein-coding
227083	chr9	85646221	85646930	+	0	NA	intron (NM_001330701, intron 11 of 25)	intron (NM_001330701, intron 11 of 25)	95379	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
142640	chr20	5722821	5723350	+	0	NA	Intergenic	Intergenic	-27302	NM_001303478	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
29287	chr10	69230471	69230630	+	0	NA	intron (NM_025130, intron 2 of 17)	intron (NM_025130, intron 2 of 17)	1940	NR_120648	101928994		NR_120648	ENSG00000229261	LOC101928994	-	uncharacterized LOC101928994	ncRNA
231056	chr9	129633701	129634400	+	0	NA	TTS (NM_001202403)	TTS (NM_001202403)	7606	NM_001286799	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
192010	chr6	16343251	16343350	+	0	NA	intron (NM_000332, intron 7 of 8)	AluY|SINE|Alu	104713	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
87039	chr16	68282701	68282900	+	0	NA	intron (NM_001076785, intron 4 of 11)	AluSx3|SINE|Alu	18274	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
221161	chr8	119862801	119863530	+	0	NA	Intergenic	Intergenic	-7271	NM_024094	79075		NM_024094	ENSG00000136982	DSCC1	DCC1	DNA replication and sister chromatid cohesion 1	protein-coding
236824	chrX	79180801	79181500	+	0	NA	Intergenic	MER21C|LTR|ERVL	36462	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
70942	chr14	104656971	104657330	+	0	NA	Intergenic	L2b|LINE|L2	8408	NR_135293	101929634		NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
97111	chr17	42514221	42514480	+	0	NA	TTS (NR_049808)	TTS (NR_049808)	162	NR_049808	100847046		NR_049808	ENSG00000283929	MIR5010	mir-5010	microRNA 5010	ncRNA
215121	chr7	155348621	155349280	+	0	NA	Intergenic	Intergenic	18983	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
116246	chr19	17576471	17577030	+	0	NA	intron (NM_024656, intron 6 of 11)	intron (NM_024656, intron 6 of 11)	21101	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
78290	chr15	90886851	90886950	+	0	NA	intron (NM_001143784, intron 2 of 16)	intron (NM_001143784, intron 2 of 16)	1854	NM_001143784	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
4581	chr1	22070051	22071030	+	0	NA	intron (NM_044472, intron 1 of 5)	AluY|SINE|Alu	17831	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
63163	chr13	113664621	113664880	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-2469	NM_002929	6011		NM_002929	ENSG00000185974	GRK1	GPRK1|RHOK|RK	G protein-coupled receptor kinase 1	protein-coding
89621	chr16	89313951	89314880	+	0	NA	intron (NR_045839, intron 3 of 9)	intron (NR_045839, intron 3 of 9)	-6037	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
222114	chr8	131909201	131909600	+	0	NA	intron (NM_001323555, intron 1 of 22)	AluJr4|SINE|Alu	5307	NM_015137	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
160206	chr3	23913971	23914330	+	0	NA	5' UTR (NM_001377359, exon 3 of 7)	5' UTR (NM_001377359, exon 3 of 7)	-2395	NM_001253379	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
168552	chr3	146550101	146550530	+	0	NA	Intergenic	HAL1|LINE|L1	-5708	NM_021105	5359		NM_021105	ENSG00000188313	PLSCR1	MMTRA1B	phospholipid scramblase 1	protein-coding
206525	chr7	34928151	34928250	+	0	NA	TTS (NM_001366673)	TTS (NM_001366673)	12634	NR_031666	100302152		NR_031666	ENSG00000221669	MIR548N	MIRN548N|hsa-mir-548n	microRNA 548n	ncRNA
142996	chr20	20359671	20359830	+	0	NA	intron (NM_015585, intron 26 of 26)	intron (NM_015585, intron 26 of 26)	-8354	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
74554	chr15	60523471	60523630	+	0	NA	intron (NR_120339, intron 4 of 5)	intron (NR_120339, intron 4 of 5)	44372	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
25728	chr10	9024151	9024450	+	0	NA	Intergenic	Intergenic	126311	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
185550	chr5	131362101	131362300	+	0	NA	intron (NM_001038702, intron 2 of 4)	LTR1A2|LTR|ERV1	98147	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
127219	chr2	38598521	38599100	+	0	NA	intron (NM_138394, intron 1 of 12)	intron (NM_138394, intron 1 of 12)	4118	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
124266	chr19	57748371	57748530	+	0	NA	intron (NR_145326, intron 1 of 3)	L2|LINE|L2	1635	NR_145327	284309		NM_173632	ENSG00000152443	ZNF776	-	zinc finger protein 776	protein-coding
162087	chr3	46892201	46893330	+	0	NA	intron (NM_001184744, intron 2 of 14)	CpG	10516	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
85502	chr16	50758301	50759100	+	0	NA	intron (NM_015247, intron 7 of 19)	L2a|LINE|L2	16285	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
223423	chr8	143948051	143949200	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	2301	NM_201380	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
98343	chr17	46286651	46287180	+	0	NA	3' UTR (NM_001352769, exon 5 of 5)	3' UTR (NM_001352769, exon 5 of 5)	-8216	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
74042	chr15	52463621	52463890	+	0	NA	intron (NM_000259, intron 1 of 40)	CR1_Mam|LINE|CR1	65125	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
171470	chr3	196445501	196445730	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-13188	NM_015562	26043		NM_015562	ENSG00000163960	UBXN7	UBXD7	UBX domain protein 7	protein-coding
163869	chr3	52498521	52499230	+	0	NA	intron (NM_015136, intron 1 of 68)	intron (NM_015136, intron 1 of 68)	3537	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
41227	chr11	65714571	65714930	+	0	NA	intron (NM_182709, intron 7 of 12)	intron (NM_182709, intron 7 of 12)	2498	NM_006388	10524		NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|NEDFASB|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
138507	chr2	207168551	207168850	+	0	NA	Intergenic	Intergenic	-1454	NM_001270943	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
123307	chr19	53572351	53572450	+	0	NA	intron (NM_001317116, intron 4 of 4)	AluJo|SINE|Alu	17093	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
225677	chr9	36475101	36475630	+	0	NA	Intergenic	Intergenic	-74167	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
208509	chr7	69685121	69685380	+	0	NA	intron (NM_001127232, intron 1 of 4)	L2c|LINE|L2	86775	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
152975	chr22	23119471	23120180	+	0	NA	intron (NM_002073, intron 2 of 2)	intron (NM_002073, intron 2 of 2)	22165	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
195276	chr6	36492021	36492450	+	0	NA	Intergenic	Intergenic	49235	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
88188	chr16	81739071	81739500	+	0	NA	Intergenic	Intergenic	-40006	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
42550	chr11	71746301	71746580	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	67419	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
3374	chr1	15682921	15683180	+	0	NA	Intergenic	Intergenic	-1270	NM_015164	23207		NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology and RUN domain containing M2	protein-coding
105342	chr17	82624051	82624430	+	0	NA	intron (NM_019613, intron 5 of 9)	intron (NM_019613, intron 5 of 9)	24204	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
218013	chr8	38465071	38465700	+	0	NA	intron (NM_001174067, intron 1 of 18)	intron (NM_001174067, intron 1 of 18)	2339	NM_001174066	2260		NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
71489	chr14	105987671	105988150	+	0	NA	Intergenic	Intergenic	-15641	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
214953	chr7	151796571	151796730	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-9688	NM_001354885	644090		NM_001354885	ENSG00000242048	PRKAG2-AS2	-	PRKAG2 antisense RNA 2	ncRNA
144699	chr20	36466421	36467080	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	4955	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
75481	chr15	66253101	66253930	+	0	NA	intron (NR_169558, intron 1 of 22)	CpG	235	NR_169556	84465		NM_032445	ENSG00000157890	MEGF11	-	multiple EGF like domains 11	protein-coding
217161	chr8	26289651	26290150	+	0	NA	Intergenic	MIRb|SINE|MIR	-1608	NM_002717	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
88881	chr16	87711721	87711980	+	0	NA	intron (NM_001351937, intron 8 of 11)	intron (NM_001351937, intron 8 of 11)	54136	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
9045	chr1	44796901	44797650	+	0	NA	Intergenic	AluJo|SINE|Alu	-3102	NM_004073	1263		NM_004073	ENSG00000173846	PLK3	CNK|FNK|PLK-3|PRK	polo like kinase 3	protein-coding
67856	chr14	74217601	74218350	+	0	NA	Intergenic	Intergenic	-21474	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
55270	chr12	102879251	102879350	+	0	NA	intron (NM_001354304, intron 4 of 13)	intron (NM_001354304, intron 4 of 13)	37944	NM_000277	5053		NM_000277	ENSG00000171759	PAH	PH|PKU|PKU1	phenylalanine hydroxylase	protein-coding
191935	chr6	15691251	15691690	+	0	NA	Intergenic	Intergenic	-28412	NM_001271669	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
200181	chr6	130776571	130776730	+	0	NA	Intergenic	L2a|LINE|L2	-50756	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
237336	chrX	118521971	118522880	+	0	NA	intron (NM_144658, intron 1 of 52)	MLT1E1A|LTR|ERVL-MaLR	26516	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
34305	chr10	131983671	131984030	+	0	NA	Intergenic	LTR39-int|LTR|ERV1	-1837	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
95528	chr17	36574671	36575030	+	0	NA	intron (NM_024835, intron 6 of 13)	intron (NM_024835, intron 6 of 13)	-17029	NM_024308	79154		NM_024308	ENSG00000278535	DHRS11	ARPG836|SDR24C1|spDHRS11	dehydrogenase/reductase 11	protein-coding
194112	chr6	31953501	31953800	+	0	NA	intron (NM_002904, intron 10 of 10)	intron (NM_002904, intron 10 of 10)	3290	NR_031601	100302242		NR_031601	ENSG00000284446	MIR1236	MIRN1236|hsa-mir-1236	microRNA 1236	ncRNA
232717	chr9	136587801	136588200	+	0	NA	Intergenic	Intergenic	29181	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
26119	chr10	13536821	13537080	+	0	NA	Intergenic	Intergenic	-7936	NM_001378151	222389		NM_152751	ENSG00000165626	BEND7	C10orf30	BEN domain containing 7	protein-coding
211083	chr7	102484551	102485530	+	0	NA	exon (NM_001277335, exon 18 of 20)	exon (NM_001277335, exon 18 of 20)	-6118	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
53683	chr12	68455601	68456530	+	0	NA	Intergenic	Intergenic	-4581	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
82045	chr16	12458621	12459280	+	0	NA	intron (NM_032167, intron 18 of 20)	intron (NM_032167, intron 18 of 20)	-261371	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA
102719	chr17	76187901	76188650	+	0	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	-47030	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
214603	chr7	150683421	150684250	+	0	NA	Intergenic	Intergenic	-1871	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
38449	chr11	45339751	45340480	+	0	NA	Intergenic	Intergenic	-15256	NR_120557	101928812		NR_120557	ENSG00000254427	LINC02696	-	long intergenic non-protein coding RNA 2696	ncRNA
40177	chr11	62894001	62894230	+	0	NA	Intergenic	AluY|SINE|Alu	12416	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
16194	chr1	153808551	153808850	+	0	NA	3' UTR (NM_020699, exon 11 of 11)	3' UTR (NM_020699, exon 11 of 11)	14753	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
161848	chr3	45698671	45699030	+	0	NA	intron (NM_001319073, intron 2 of 20)	AluSc|SINE|Alu	9454	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
102687	chr17	76130051	76130550	+	0	NA	Intergenic	Intergenic	-10256	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
81920	chr16	11744721	11745080	+	0	NA	Intergenic	AluJr|SINE|Alu	-2043	NR_136671	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
232689	chr9	136529321	136529580	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	-9824	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
169873	chr3	177338871	177339330	+	0	NA	Intergenic	Intergenic	44658	NR_047465	100820709		NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
94500	chr17	29300801	29301200	+	0	NA	Intergenic	AluSx3|SINE|Alu	-6852	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
216406	chr8	18197101	18197500	+	0	NA	intron (NM_001160179, intron 2 of 4)	intron (NM_001160179, intron 2 of 4)	-12803	NM_001160173	9		NM_000662	ENSG00000171428	NAT1	AAC1|MNAT|NAT-1|NATI	N-acetyltransferase 1	protein-coding
159686	chr3	15529021	15529680	+	0	NA	Intergenic	Intergenic	-7644	NM_080539	8292		NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
168756	chr3	151205771	151205950	+	0	NA	intron (NM_053002, intron 14 of 42)	intron (NM_053002, intron 14 of 42)	-2644	NM_013308	29909		NM_013308	ENSG00000174946	GPR171	H963	G protein-coupled receptor 171	protein-coding
118289	chr19	35299521	35300130	+	0	NA	exon (NM_002361, exon 5 of 11)	exon (NM_002361, exon 5 of 11)	7664	NM_002361	4099		NM_002361	ENSG00000105695	MAG	GMA|S-MAG|SIGLEC-4A|SIGLEC4|SIGLEC4A|SPG75	myelin associated glycoprotein	protein-coding
22829	chr1	225397321	225397780	+	0	NA	intron (NM_001367479, intron 84 of 85)	intron (NM_001367479, intron 84 of 85)	30488	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
76212	chr15	73897401	73897830	+	0	NA	Intergenic	Intergenic	24051	NM_153356	161514		NM_153356	ENSG00000167139	TBC1D21	MgcRabGAP	TBC1 domain family member 21	protein-coding
214704	chr7	150995671	150996280	+	0	NA	intron (NM_001160109, intron 2 of 13)	intron (NM_001160109, intron 2 of 13)	2171	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
88723	chr16	85988651	85989150	+	0	NA	Intergenic	Intergenic	70553	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
224751	chr9	21813821	21814330	+	0	NA	intron (NM_002451, intron 1 of 7)	intron (NM_002451, intron 1 of 7)	11439	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
232560	chr9	136359071	136359630	+	0	NA	TTS (NM_001080849)	TTS (NM_001080849)	4394	NM_001080849	728489		NM_001080849	ENSG00000213221	DNLZ	C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2	DNL-type zinc finger	protein-coding
85706	chr16	56605971	56606450	+	0	NA	Intergenic	Intergenic	-2374	NM_005953	4502		NM_005953	ENSG00000125148	MT2A	MT-2|MT-II|MT2	metallothionein 2A	protein-coding
4752	chr1	23496121	23496380	+	0	NA	Intergenic	AluJo|SINE|Alu	-12071	NM_017707	55616		NM_017707	ENSG00000088280	ASAP3	ACAP4|CENTB6|DDEFL1|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding
99967	chr17	57532071	57532430	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	-8653	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
68274	chr14	77059501	77059740	+	0	NA	non-coding (NR_110554, exon 2 of 4)	non-coding (NR_110554, exon 2 of 4)	16571	NR_110553	102724190		NR_110553	ENSG00000258819	LINC02289	-	long intergenic non-protein coding RNA 2289	ncRNA
111219	chr19	3497921	3498180	+	0	NA	intron (NM_001145165, intron 1 of 4)	L2a|LINE|L2	2624	NM_031304	83475		NM_031304	ENSG00000129932	DOHH	HLRC1|NEDMVIC|hDOHH	deoxyhypusine hydroxylase	protein-coding
151299	chr21	45536621	45536880	+	0	NA	intron (NM_194255, intron 2 of 5)	intron (NM_194255, intron 2 of 5)	-1994	NM_001205207	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
223231	chr8	143611021	143611380	+	0	NA	Intergenic	Intergenic	-1625	NR_138144	65263		NM_023078	ENSG00000104524	PYCR3	PYCRL	pyrroline-5-carboxylate reductase 3	protein-coding
36422	chr11	4175621	4175880	+	0	NA	Intergenic	L1PA3|LINE|L1	-11402	NR_047550	100506082		NR_047550	ENSG00000254480	LINC02749	-	long intergenic non-protein coding RNA 2749	ncRNA
15577	chr1	150568901	150569600	+	0	NA	intron (NR_104133, intron 2 of 3)	7SLRNA|srpRNA|srpRNA	5302	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
52884	chr12	57198921	57199180	+	0	NA	intron (NM_002332, intron 60 of 88)	MIRb|SINE|MIR	4546	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
89329	chr16	88742121	88742580	+	0	NA	promoter-TSS (NR_120387)	promoter-TSS (NR_120387)	-417	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
97952	chr17	45230621	45231100	+	0	NA	intron (NM_005892, intron 2 of 26)	intron (NM_005892, intron 2 of 26)	8975	NM_005892	752		NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin like 1	protein-coding
124032	chr19	55490721	55491280	+	0	NA	exon (NM_001195267, exon 6 of 13)	exon (NM_001195267, exon 6 of 13)	2564	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
230685	chr9	128726271	128726430	+	0	NA	intron (NR_046240, intron 1 of 1)	MER67B|LTR|ERV1	1888	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
19374	chr1	173994501	173994700	+	0	NA	intron (NM_172071, intron 1 of 19)	AluJo|SINE|Alu	-1528	NM_001300851	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
176829	chr4	102561851	102562350	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-59614	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
18557	chr1	162569971	162570130	+	0	NA	intron (NM_001324114, intron 2 of 9)	AluY|SINE|Alu	8151	NM_001324114	6675		NM_003115	ENSG00000117143	UAP1	AGX|AGX1|AGX2|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
114352	chr19	12292521	12292780	+	0	NA	intron (NM_001353550, intron 1 of 4)	intron (NM_001353550, intron 1 of 4)	1962	NM_001353551	51710		NM_016264	ENSG00000197857	ZNF44	GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58	zinc finger protein 44	protein-coding
14962	chr1	147931451	147931550	+	0	NA	intron (NM_016334, intron 1 of 13)	intron (NM_016334, intron 1 of 13)	3080	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
227555	chr9	92097851	92098550	+	0	NA	intron (NM_001368272, intron 3 of 15)	HERV-Fc1_LTR3|LTR|ERV1	17213	NM_006415	10558		NM_006415	ENSG00000090054	SPTLC1	ALS27|HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI	serine palmitoyltransferase long chain base subunit 1	protein-coding
205943	chr7	26078901	26079500	+	0	NA	Intergenic	MIRb|SINE|MIR	-72998	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
128476	chr2	57906201	57906430	+	0	NA	Intergenic	Intergenic	-1336	NM_001288838	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
65254	chr14	49907621	49908280	+	0	NA	Intergenic	Intergenic	14868	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
73900	chr15	50681101	50681780	+	0	NA	intron (NR_149152, intron 1 of 38)	intron (NR_149152, intron 1 of 38)	5357	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
143025	chr20	21098651	21099100	+	0	NA	intron (NR_147212, intron 1 of 2)	intron (NR_147212, intron 1 of 2)	7483	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
230418	chr9	128125851	128126380	+	0	NA	intron (NM_198938, intron 1 of 7)	intron (NM_198938, intron 1 of 7)	1614	NM_025072	80142		NM_025072	ENSG00000148334	PTGES2	C9orf15|GBF-1|GBF1|PGES2|mPGES-2	prostaglandin E synthase 2	protein-coding
49616	chr12	27821151	27821600	+	0	NA	Intergenic	Intergenic	-41139	NM_001146221	100287284		NM_001146221	ENSG00000205693	MANSC4	-	MANSC domain containing 4	protein-coding
65432	chr14	51241501	51241650	+	0	NA	intron (NM_030755, intron 1 of 7)	intron (NM_030755, intron 1 of 7)	1328	NM_030755	81542		NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
54594	chr12	92501701	92501980	+	0	NA	Intergenic	Intergenic	35161	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
119465	chr19	40430121	40430380	+	0	NA	Intergenic	AluSg|SINE|Alu	-4258	NM_013376	29950		NM_013376	ENSG00000197019	SERTAD1	SEI1|TRIP-Br1|TRIPBR1	SERTA domain containing 1	protein-coding
5360	chr1	25355821	25356500	+	0	NA	intron (NM_014313, intron 5 of 6)	L2a|LINE|L2	17826	NM_014313	23585		NM_014313	ENSG00000183726	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
149715	chr21	34079071	34079780	+	0	NA	intron (NM_032476, intron 1 of 2)	intron (NM_032476, intron 1 of 2)	5847	NM_006933	6526		NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
62929	chr13	111184421	111185280	+	0	NA	intron (NM_001354057, intron 3 of 18)	intron (NM_001354057, intron 3 of 18)	-1944	NM_001113513	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
27956	chr10	42094421	42094500	+	0	NA	Intergenic	Intergenic	273585	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
35994	chr11	2887521	2887780	+	0	NA	non-coding (NR_169304, exon 4 of 4)	non-coding (NR_169304, exon 4 of 4)	-1875	NM_001362474	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
218319	chr8	42721501	42722300	+	0	NA	intron (NM_000749, intron 3 of 5)	MLT1K|LTR|ERVL-MaLR	24524	NM_001347717	1142		NM_000749	ENSG00000147432	CHRNB3	-	cholinergic receptor nicotinic beta 3 subunit	protein-coding
2831	chr1	11057271	11058200	+	0	NA	intron (NM_003132, intron 3 of 7)	L2b|LINE|L2	2283	NM_003132	6723		NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
131531	chr2	96601771	96602130	+	0	NA	intron (NR_146100, intron 18 of 19)	intron (NR_146100, intron 18 of 19)	36041	NR_047658	55683		NM_017991	ENSG00000114982	KANSL3	KIAA1310|NSL3|Rcd1	KAT8 regulatory NSL complex subunit 3	protein-coding
29549	chr10	71313951	71315100	+	0	NA	Intergenic	(CCGCC)n|Simple_repeat|Simple_repeat	-4728	NR_033413	55315		NM_018344	ENSG00000198246	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 member 3	protein-coding
58250	chr12	128796001	128797100	+	0	NA	intron (NM_145648, intron 7 of 7)	intron (NM_145648, intron 7 of 7)	27408	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
150979	chr21	44333271	44333650	+	0	NA	intron (NM_001271440, intron 3 of 6)	intron (NM_001271440, intron 3 of 6)	4878	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
184480	chr5	100837101	100837300	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-20635	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
10062	chr1	58749521	58749780	+	0	NA	Intergenic	L2c|LINE|L2	34397	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
197048	chr6	53410701	53411000	+	0	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	-61671	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
34456	chr10	132438551	132439250	+	0	NA	Intergenic	Intergenic	-6289	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
224939	chr9	33030421	33030680	+	0	NA	exon (NM_001539, exon 5 of 9)	exon (NM_001539, exon 5 of 9)	5277	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
147618	chr20	62138101	62138650	+	0	NA	intron (NM_002792, intron 4 of 6)	intron (NM_002792, intron 4 of 6)	5019	NM_002792	5688		NM_002792	ENSG00000101182	PSMA7	C6|HEL-S-276|HSPC|RC6-1|XAPC7	proteasome 20S subunit alpha 7	protein-coding
131816	chr2	98617501	98618030	+	0	NA	intron (NM_001330354, intron 5 of 5)	intron (NM_001330354, intron 5 of 5)	9176	NM_001330353	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
67391	chr14	69786971	69787130	+	0	NA	intron (NM_003049, intron 1 of 4)	intron (NM_003049, intron 1 of 4)	10191	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
87487	chr16	71793621	71793880	+	0	NA	intron (NM_001128, intron 1 of 22)	AluJb|SINE|Alu	15084	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
119572	chr19	40665771	40665930	+	0	NA	TTS (NM_001289979)	TTS (NM_001289979)	24314	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
163735	chr3	52317421	52318150	+	0	NA	intron (NM_015512, intron 1 of 77)	intron (NM_015512, intron 1 of 77)	1466	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
211389	chr7	105021171	105022600	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	7680	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
12139	chr1	100075871	100076030	+	0	NA	intron (NM_033055, intron 8 of 11)	AluJo|SINE|Alu	37855	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
19	chr1	32651	32950	+	0	NA	Intergenic	Intergenic	2434	NR_036051	100302278		NR_036051	ENSG00000284332	MIR1302-2	MIRN1302-2|hsa-mir-1302-2	microRNA 1302-2	ncRNA
76724	chr15	76147901	76148330	+	0	NA	intron (NM_152335, intron 3 of 10)	intron (NM_152335, intron 3 of 10)	33371	NR_120360	101929439		NR_120360	ENSG00000259422	LOC101929439	-	uncharacterized LOC101929439	ncRNA
105193	chr17	82301971	82302880	+	0	NA	Intergenic	Intergenic	-9611	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
100715	chr17	63853501	63853700	+	0	NA	Intergenic	AluJr|SINE|Alu	-3416	NR_002947	146771		NR_002947	ENSG00000293480	TCAM1P	TCAM1	testicular cell adhesion molecule 1, pseudogene	pseudo
138886	chr2	217735101	217735300	+	0	NA	intron (NR_026597, intron 1 of 12)	MER1B|DNA|hAT-Charlie	21393	NR_026597	729582		NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
147485	chr20	59150951	59151200	+	0	NA	intron (NM_001384354, intron 2 of 7)	intron (NM_001384354, intron 2 of 7)	-12746	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
59202	chr13	22216501	22216700	+	0	NA	intron (NR_103810, intron 1 of 1)	AluSx4|SINE|Alu	6315	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
164255	chr3	57354771	57355000	+	0	NA	intron (NM_001366028, intron 59 of 73)	L1MD1|LINE|L1	-62200	NM_001142733	142686		NM_130387	ENSG00000239388	ASB14	-	ankyrin repeat and SOCS box containing 14	protein-coding
153246	chr22	24028521	24028780	+	0	NA	intron (NM_001199281, intron 1 of 36)	intron (NM_001199281, intron 1 of 36)	17280	NM_001199281	23523		NM_012295	ENSG00000099991	CABIN1	CAIN|KB-318B8.7|PPP3IN	calcineurin binding protein 1	protein-coding
33513	chr10	119181871	119182430	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3338	NM_006793	10935		NM_006793	ENSG00000165672	PRDX3	AOP-1|AOP1|HBC189|MER5|PPPCD|PRO1748|SCAR32|SP-22|prx-III	peroxiredoxin 3	protein-coding
46809	chr11	130313651	130315500	+	0	NA	promoter-TSS (NR_148980)	promoter-TSS (NR_148980)	137	NM_001301099	29068		NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
86077	chr16	57617601	57618030	+	0	NA	Intergenic	Intergenic	-1923	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
189339	chr5	172177301	172177830	+	0	NA	intron (NM_005990, intron 1 of 18)	MER33|DNA|hAT-Charlie	10659	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
97617	chr17	44139471	44139830	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2280	NM_001171251	78995		NM_024032	ENSG00000125319	HROB	C17orf53|MCM8IP	homologous recombination factor with OB-fold	protein-coding
146031	chr20	47297051	47297150	+	0	NA	intron (NM_001281781, intron 4 of 20)	intron (NM_001281781, intron 4 of 20)	-21402	NR_024594	100131496		NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA
50568	chr12	48185321	48185650	+	0	NA	3' UTR (NM_001013635, exon 1 of 1)	3' UTR (NM_001013635, exon 1 of 1)	1841	NM_001013635	387856		NM_001013635	ENSG00000177875	CCDC184	C12orf68	coiled-coil domain containing 184	protein-coding
58770	chr12	132708551	132708850	+	0	NA	Intergenic	AluSx|SINE|Alu	-2142	NM_001170544	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
24885	chr10	987701	989480	+	0	NA	intron (NM_012341, intron 1 of 16)	CpG	156	NM_012341	23560		NM_012341	ENSG00000107937	GTPBP4	CRFG|NGB|NOG1	GTP binding protein 4	protein-coding
146304	chr20	49179571	49180250	+	0	NA	intron (NM_001322929, intron 1 of 14)	intron (NM_001322929, intron 1 of 14)	8424	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
210634	chr7	100458701	100459000	+	0	NA	intron (NM_001004323, intron 2 of 2)	AluSq|SINE|Alu	5410	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
139195	chr2	219247421	219248330	+	0	NA	intron (NM_001330215, intron 4 of 5)	intron (NM_001330215, intron 4 of 5)	1979	NM_001330214	8576		NM_003691	ENSG00000115661	STK16	KRCT|MPSK|PKL12|PSK|TSF1|hPSK	serine/threonine kinase 16	protein-coding
22560	chr1	222619671	222619850	+	0	NA	intron (NM_001324062, intron 1 of 28)	intron (NM_001324062, intron 1 of 28)	1658	NM_001324064	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
13857	chr1	117667771	117667930	+	0	NA	Intergenic	L2b|LINE|L2	61802	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
12337	chr1	101081221	101082030	+	0	NA	intron (NR_109849, intron 3 of 4)	FLAM_A|SINE|Alu	55779	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
8505	chr1	40860021	40860280	+	0	NA	TTS (NM_133467)	TTS (NM_133467)	2213	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
181944	chr5	55002251	55002630	+	0	NA	Intergenic	L1PA6|LINE|L1	-16847	NM_001135604	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
37348	chr11	14904551	14905000	+	0	NA	Intergenic	Intergenic	-12544	NM_024514	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
144970	chr20	37194321	37194900	+	0	NA	intron (NM_001324306, intron 2 of 15)	intron (NM_001324306, intron 2 of 15)	-15062	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
103056	chr17	77187951	77188450	+	0	NA	intron (NM_001144001, intron 1 of 14)	L1MD1|LINE|L1	2987	NM_001144001	6397		NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding
35068	chr11	606701	606900	+	0	NA	intron (NM_001286582, intron 13 of 17)	intron (NM_001286582, intron 13 of 17)	9150	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
206896	chr7	37786921	37787380	+	0	NA	Intergenic	Intergenic	-61447	NM_016616	51314		NM_016616	ENSG00000086288	NME8	CILD6|DNAI8|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2	NME/NM23 family member 8	protein-coding
154971	chr22	37281101	37281300	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-1308	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
104598	chr17	81406371	81406530	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-5672	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
117309	chr19	19500921	19501550	+	0	NA	exon (NM_001384511, exon 10 of 13)	exon (NM_001384511, exon 10 of 13)	14313	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
220931	chr8	108266321	108266680	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-17783	NM_001568	3646		NM_001568	ENSG00000104408	EIF3E	EIF3-P48|EIF3S6|INT6|eIF3-p46	eukaryotic translation initiation factor 3 subunit E	protein-coding
236108	chrX	57121001	57121820	+	0	NA	5' UTR (NM_001282461, exon 1 of 3)	5' UTR (NM_001282461, exon 1 of 3)	136	NM_001006681	474343		NM_001006681	ENSG00000186787	SPIN2B	SPIN-2|SPIN-2B|SPIN2_duplicate|TDRD26|dJ323P24.2	spindlin family member 2B	protein-coding
156030	chr22	39957951	39958050	+	0	NA	intron (NM_004810, intron 3 of 7)	L2a|LINE|L2	11183	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
186260	chr5	134524601	134526300	+	0	NA	promoter-TSS (NM_015288)	promoter-TSS (NM_015288)	-220	NM_001289985	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
22595	chr1	223143901	223144580	+	0	NA	promoter-TSS (NM_003268)	promoter-TSS (NM_003268)	-992	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
51973	chr12	53940621	53940880	+	0	NA	intron (NM_017410, intron 1 of 1)	intron (NM_017410, intron 1 of 1)	-1107	NR_047507	100874366		NR_047507	ENSG00000249641	HOXC13-AS	HOXC-AS5	HOXC13 antisense RNA	ncRNA
225858	chr9	38242201	38242730	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-150237	NM_000692	219		NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
187975	chr5	149485501	149486300	+	0	NA	Intergenic	Intergenic	55254	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
50739	chr12	48989801	48990000	+	0	NA	Intergenic	Intergenic	-8447	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
166721	chr3	121546701	121547450	+	0	NA	Intergenic	L2a|LINE|L2	-1087	NM_199420	10721		NM_006596	ENSG00000051341	POLQ	PRO0327	DNA polymerase theta	protein-coding
228424	chr9	99722801	99723300	+	0	NA	intron (NR_109802, intron 2 of 6)	intron (NR_109802, intron 2 of 6)	96839	NR_109802	101928438		NR_109802	ENSG00000237461	LOC101928438	-	uncharacterized LOC101928438	ncRNA
183126	chr5	74851951	74852450	+	0	NA	intron (NM_015566, intron 1 of 12)	intron (NM_015566, intron 1 of 12)	-13693	NR_134288	441086		NR_134288		FAM169A-AS1	TP53LC02	FAM169A antisense RNA 1	ncRNA
227632	chr9	92883771	92884250	+	0	NA	intron (NR_111003, intron 2 of 3)	intron (NR_111003, intron 2 of 3)	1443	NR_111003	642943		NR_111003		LOC642943	-	SPATA31 subfamily A pseudogene	pseudo
65774	chr14	54443001	54443200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1726	NM_005776	10175		NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family member 1	protein-coding
210733	chr7	100625751	100625850	+	0	NA	intron (NM_003227, intron 17 of 17)	AluJb|SINE|Alu	7850	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
222755	chr8	141418801	141419500	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-2238	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
170157	chr3	183550851	183551150	+	0	NA	intron (NR_046687, intron 1 of 1)	AluY|SINE|Alu	2265	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
37702	chr11	30056651	30056850	+	0	NA	Intergenic	L1PA3|LINE|L1	-39720	NM_002233	3739		NM_002233	ENSG00000182255	KCNA4	HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2	potassium voltage-gated channel subfamily A member 4	protein-coding
206437	chr7	32863901	32864100	+	0	NA	Intergenic	L2|LINE|L2	27760	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
136439	chr2	176781551	176781850	+	0	NA	Intergenic	Intergenic	143946	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
85223	chr16	47568321	47568800	+	0	NA	intron (NM_001031835, intron 8 of 31)	L1PB3|LINE|L1	107229	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
91408	chr17	4699521	4699980	+	0	NA	intron (NM_001278241, intron 1 of 18)	AluSz6|SINE|Alu	4387	NM_001278241	27043		NM_014389	ENSG00000141456	PELP1	MNAR|P160	proline, glutamate and leucine rich protein 1	protein-coding
65615	chr14	52269971	52270130	+	0	NA	intron (NM_001281469, intron 2 of 2)	MER58D|DNA|hAT-Charlie	2352	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
91160	chr17	3772071	3772230	+	0	NA	intron (NM_002208, intron 2 of 30)	L2c|LINE|L2	29038	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
88206	chr16	81817021	81818900	+	0	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	38669	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
155707	chr22	39098071	39098450	+	0	NA	intron (NM_001166003, intron 1 of 5)	AluYc|SINE|Alu	1016	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
56346	chr12	112992451	112993150	+	0	NA	intron (NM_016817, intron 2 of 10)	intron (NM_016817, intron 2 of 10)	14281	NM_002535	4939		NM_002535	ENSG00000111335	OAS2	-	2'-5'-oligoadenylate synthetase 2	protein-coding
212863	chr7	130858221	130858680	+	0	NA	Intergenic	L1MA4|LINE|L1	18360	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
116122	chr19	17322521	17323080	+	0	NA	TTS (NM_020959)	TTS (NM_020959)	12055	NM_020959	57719		NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
70440	chr14	102045951	102047200	+	0	NA	intron (NM_001376, intron 72 of 77)	intron (NM_001376, intron 72 of 77)	40469	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
5415	chr1	25545471	25545630	+	0	NA	intron (NM_015627, intron 1 of 8)	intron (NM_015627, intron 1 of 8)	1944	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
38813	chr11	47291701	47292200	+	0	NA	intron (NR_164838, intron 18 of 30)	intron (NR_164838, intron 18 of 30)	-19840	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
195249	chr6	36383471	36384050	+	0	NA	intron (NM_001207040, intron 1 of 6)	intron (NM_001207040, intron 1 of 6)	3909	NM_001207038	51513		NM_016135	ENSG00000010030	ETV7	TEL-2|TEL2|TELB	ETS variant transcription factor 7	protein-coding
185886	chr5	132699871	132700030	+	0	NA	intron (NM_001300791, intron 17 of 18)	intron (NM_001300791, intron 17 of 18)	-17321	NR_134248	105379176		NR_134248		LOC105379176	-	uncharacterized LOC105379176	ncRNA
91195	chr17	3892901	3894330	+	0	NA	promoter-TSS (NM_032294)	promoter-TSS (NM_032294)	-562	NM_032294	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
89127	chr16	88506771	88507000	+	0	NA	intron (NM_153813, intron 3 of 9)	CpG	24168	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
84836	chr16	31117251	31118830	+	0	NA	intron (NM_032188, intron 1 of 10)	intron (NM_032188, intron 1 of 10)	376	NM_032188	84148		NM_032188	ENSG00000103510	KAT8	LIGOWS|MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
153279	chr22	24159101	24159750	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-22062	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
147992	chr20	63015921	63016180	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	6667	NR_033370	63930		NR_033370	ENSG00000272259	LINC01749	-	long intergenic non-protein coding RNA 1749	ncRNA
156217	chr22	40334551	40336380	+	0	NA	3' UTR (NM_001162501, exon 23 of 23)	3' UTR (NM_001162501, exon 23 of 23)	-11035	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
237491	chrX	119880471	119881190	+	0	NA	Intergenic	Intergenic	8998	NM_004541	4694		NM_004541	ENSG00000125356	NDUFA1	CI-MWFE|MC1DN12|MWFE|ZNF183	NADH:ubiquinone oxidoreductase subunit A1	protein-coding
116297	chr19	17765201	17765430	+	0	NA	intron (NR_169252, intron 6 of 27)	L2a|LINE|L2	11106	NR_169258	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
220759	chr8	102391801	102392400	+	0	NA	intron (NM_001282873, intron 1 of 58)	MER41A|LTR|ERV1	-20239	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
185507	chr5	131321551	131321850	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1ME4b|LINE|L1	57647	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
67021	chr14	67526601	67526950	+	0	NA	intron (NM_001348546, intron 1 of 2)	intron (NM_001348546, intron 1 of 2)	-6515	NM_020715	57475		NM_020715	ENSG00000054690	PLEKHH1	-	pleckstrin homology, MyTH4 and FERM domain containing H1	protein-coding
12906	chr1	110467751	110467850	+	0	NA	Intergenic	Intergenic	-12966	NR_003599	643160		NR_003599	ENSG00000240194	CYMP	-	chymosin, pseudogene	pseudo
48330	chr12	9046721	9046980	+	0	NA	Intergenic	L1MCa|LINE|L1	18220	NR_034140	253128		NM_182550	ENSG00000214851	LINC00612	C12orf33	long intergenic non-protein coding RNA 612	ncRNA
1655	chr1	3859151	3859250	+	0	NA	intron (NR_104222, intron 2 of 7)	intron (NR_104222, intron 2 of 7)	1724	NR_135151	1677		NM_004402	ENSG00000169598	DFFB	CAD|CPAN|DFF-40|DFF2|DFF40	DNA fragmentation factor subunit beta	protein-coding
108035	chr18	59087371	59087730	+	0	NA	Intergenic	Intergenic	51871	NR_024021	390858		NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
123665	chr19	54881151	54881600	+	0	NA	intron (NM_133269, intron 2 of 4).8	L1PREC2|LINE|L1	7140	NM_133274	2204		NM_002000	ENSG00000186431	FCAR	CD89|CTB-61M7.2|FcalphaR|FcalphaRI	Fc alpha receptor	protein-coding
90692	chr17	1737721	1738180	+	0	NA	3' UTR (NM_001163673, exon 10 of 10)	3' UTR (NM_001163673, exon 10 of 10)	-4921	NM_000934	5345		NM_000934	ENSG00000167711	SERPINF2	A2AP|AAP|ALPHA-2-PI|API|PLI|alpha2AP	serpin family F member 2	protein-coding
68754	chr14	91055151	91055250	+	0	NA	intron (NM_001322235, intron 1 of 17)	L1MB8|LINE|L1	4924	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
83581	chr16	28147501	28148280	+	0	NA	intron (NM_001270940, intron 9 of 24)	AluSz|SINE|Alu	64075	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
98384	chr17	46503051	46503350	+	0	NA	Intergenic	AluY|SINE|Alu	-9510	NM_001006607	474170		NM_001006607	ENSG00000238083	LRRC37A2	LRRC37	leucine rich repeat containing 37 member A2	protein-coding
109691	chr19	1046201	1046480	+	0	NA	exon (NM_019112, exon 13 of 47)	exon (NM_019112, exon 13 of 47)	6233	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
237760	chrX	129744901	129745600	+	0	NA	exon (NM_003399, exon 4 of 21)	exon (NM_003399, exon 4 of 21)	6271	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
60085	chr13	35475351	35475730	+	0	NA	exon (NM_005584, exon 1 of 1)	exon (NM_005584, exon 1 of 1)	1149	NM_005584	4081		NM_005584	ENSG00000180660	MAB21L1	CAGR1|COFG|Nbla00126	mab-21 like 1	protein-coding
195027	chr6	35473471	35474400	+	0	NA	3' UTR (NM_003214, exon 13 of 13)	3' UTR (NM_003214, exon 13 of 13)	3427	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
40379	chr11	63998021	63998280	+	0	NA	TTS (NM_014067)	TTS (NM_014067)	12297	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
101152	chr17	65055321	65056000	+	0	NA	5' UTR (NM_001282425, exon 1 of 4)	5' UTR (NM_001282425, exon 1 of 4)	114	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
150946	chr21	44296571	44296830	+	0	NA	intron (NM_000383, intron 13 of 13)	intron (NM_000383, intron 13 of 13)	-3353	NM_002626	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
210116	chr7	98108401	98108800	+	0	NA	intron (NM_014916, intron 1 of 13)	intron (NM_014916, intron 1 of 13)	1738	NM_014916	22853		NM_014916	ENSG00000164715	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK	lemur tyrosine kinase 2	protein-coding
26317	chr10	15094801	15095000	+	0	NA	TTS (NR_160789)	TTS (NR_160789)	-2280	NM_001265601	10557		NM_006414	ENSG00000152464	RPP38	-	ribonuclease P/MRP subunit p38	protein-coding
177055	chr4	108018551	108018900	+	0	NA	intron (NM_001184705, intron 3 of 8)	intron (NM_001184705, intron 3 of 8)	14061	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
89099	chr16	88486621	88486880	+	0	NA	intron (NM_153813, intron 2 of 9)	intron (NM_153813, intron 2 of 9)	17832	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
110610	chr19	2191651	2192300	+	0	NA	intron (NM_032482, intron 5 of 27)	intron (NM_032482, intron 5 of 27)	28042	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
134187	chr2	134320771	134321800	+	0	NA	intron (NM_001371457, intron 5 of 16)	intron (NM_001371457, intron 5 of 16)	67213	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
47966	chr12	6873101	6874600	+	0	NA	promoter-TSS (NM_001319670)	promoter-TSS (NM_001319670)	-547	NM_032641	84727		NM_032641	ENSG00000111671	SPSB2	GRCC9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding
150690	chr21	43698701	43698900	+	0	NA	Intergenic	LTR14|LTR|ERVK	-20329	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
204189	chr7	2480151	2480650	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-4017	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
25144	chr10	4285351	4285450	+	0	NA	Intergenic	Intergenic	-41488	NR_108040	100652988		NR_108040		LINC00702	-	long intergenic non-protein coding RNA 702	ncRNA
165574	chr3	101561121	101563180	+	0	NA	intron (NM_017819, intron 1 of 1)	intron (NM_017819, intron 1 of 1)	282	NM_017819	54931		NM_017819	ENSG00000174173	TRMT10C	COXPD30|HNYA|MRPP1|RG9MTD1	tRNA methyltransferase 10C, mitochondrial RNase P subunit	protein-coding
173761	chr4	16891471	16891630	+	0	NA	intron (NR_130734, intron 2 of 6)	AluSg|SINE|Alu	7095	NM_001304434	9079		NM_001290	ENSG00000169744	LDB2	CLIM1|LDB-2|LDB1	LIM domain binding 2	protein-coding
159263	chr3	12950751	12951050	+	0	NA	intron (NM_001134382, intron 1 of 13)	AluY|SINE|Alu	16830	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
43284	chr11	75824371	75824800	+	0	NA	intron (NM_003369, intron 1 of 14)	intron (NM_003369, intron 1 of 14)	9375	NM_003369	7405		NM_003369	ENSG00000198382	UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
226225	chr9	65876251	65876430	+	0	NA	intron (NR_160670, intron 1 of 3).4	intron (NR_160670, intron 1 of 3).4	284	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
191502	chr6	11236171	11236880	+	0	NA	intron (NM_001142393, intron 2 of 7)	MIR3|SINE|MIR	-3843	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
123801	chr19	55158801	55159350	+	0	NA	exon (NM_001256714, exon 12 of 12)	exon (NM_001256714, exon 12 of 12)	-1343	NM_000363	7137		NM_000363	ENSG00000129991	TNNI3	CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI	troponin I3, cardiac type	protein-coding
113854	chr19	10644521	10645780	+	0	NA	TTS (NM_001145056)	TTS (NM_001145056)	8722	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
77404	chr15	83164801	83165280	+	0	NA	intron (NM_016073, intron 1 of 5)	Arthur1C|DNA|hAT-Tip100	42783	NM_016073	50810		NM_016073	ENSG00000166503	HDGFL3	CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3	HDGF like 3	protein-coding
189033	chr5	169647201	169648000	+	0	NA	intron (NR_156756, intron 1 of 52)	intron (NR_156756, intron 1 of 52)	10325	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
162251	chr3	47281371	47284600	+	0	NA	promoter-TSS (NM_025010)	promoter-TSS (NM_025010)	41	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
104566	chr17	81348551	81349400	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-18301	NR_165247	284186		NM_178520	ENSG00000185332	TMEM105	-	TMEM105 long non-coding RNA	ncRNA
128449	chr2	55607521	55607980	+	0	NA	intron (NM_020463, intron 2 of 14)	MER21B|LTR|ERVL	9872	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
206868	chr7	37617551	37617670	+	0	NA	Intergenic	L1PA3|LINE|L1	-66156	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
216094	chr8	11017471	11017630	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	17752	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
57642	chr12	122516301	122517280	+	0	NA	intron (NR_036436, intron 5 of 9)	AluJb|SINE|Alu	10146	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
181022	chr5	35864301	35864700	+	0	NA	intron (NM_002185, intron 2 of 7)	L1ME2|LINE|L1	7609	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
154308	chr22	31951901	31952500	+	0	NA	intron (NM_003405, intron 1 of 1)	intron (NM_003405, intron 1 of 1)	-6838	NM_015372	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
20696	chr1	200622171	200622980	+	0	NA	Intergenic	Intergenic	-1824	NM_014875	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
237517	chrX	120145521	120145930	+	0	NA	non-coding (NR_131238, exon 5 of 5)	non-coding (NR_131238, exon 5 of 5)	-12888	NM_001099685	727940		NM_001099685	ENSG00000203989	RHOXF2B	-	Rhox homeobox family member 2B	protein-coding
142947	chr20	18805421	18806080	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-8033	NM_178483	140856		NM_178483	ENSG00000132631	SCP2D1	C20orf79|HSD22|dJ1068E13.2	SCP2 sterol binding domain containing 1	protein-coding
107519	chr18	48136871	48137230	+	0	NA	promoter-TSS (NM_001039360)	promoter-TSS (NM_001039360)	98	NM_001039360	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
64985	chr14	38056221	38056600	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-151494	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
69639	chr14	97730721	97730980	+	0	NA	Intergenic	Intergenic	31981	NR_146447	100132612		NR_146447	ENSG00000258869	LINC02312	-	long intergenic non-protein coding RNA 2312	ncRNA
117003	chr19	18902921	18904130	+	0	NA	intron (NM_007263, intron 6 of 9)	intron (NM_007263, intron 6 of 9)	-6798	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
8807	chr1	42940751	42941280	+	0	NA	intron (NM_006516, intron 2 of 9)	intron (NM_006516, intron 2 of 9)	17853	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
173490	chr4	9221651	9222100	+	0	NA	TTS (NM_001256862)	TTS (NM_001256862)	1723	NM_001256862	100287478		NM_001256862	ENSG00000249811	USP17L21	-	ubiquitin specific peptidase 17 like family member 21	protein-coding
140691	chr2	234275251	234275550	+	0	NA	Intergenic	Intergenic	179195	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
93230	chr17	17846521	17847250	+	0	NA	3' UTR (NM_001288787, exon 14 of 14)	3' UTR (NM_001288787, exon 14 of 14)	-9874	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
55750	chr12	108495071	108495250	+	0	NA	Intergenic	Intergenic	-20117	NM_007076	11153		NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain protein adenylyltransferase	protein-coding
191987	chr6	16179671	16181130	+	0	NA	Intergenic	LTR12C|LTR|ERV1	38844	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
178732	chr4	153074571	153074730	+	0	NA	Intergenic	Intergenic	-77513	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
112398	chr19	6112171	6112530	+	0	NA	Intergenic	MIR|SINE|MIR	-1850	NM_134433	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
220512	chr8	100671801	100672000	+	0	NA	Intergenic	Intergenic	-22235	NM_152628	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
152318	chr22	20360501	20360780	+	0	NA	Intergenic	CpG	21727	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
206992	chr7	38337801	38338380	+	0	NA	Intergenic	Intergenic	-3487	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
25645	chr10	8243651	8243950	+	0	NA	Intergenic	L1ME1|LINE|L1	24505	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
173083	chr4	6222951	6223200	+	0	NA	intron (NR_037863, intron 1 of 3)	MIR|SINE|MIR	22342	NR_037863	285484		NR_037863		JAKMIP1-DT	LINC02495	JAKMIP1 divergent transcript	ncRNA
145	chr1	522401	522600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-27055	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
93431	chr17	18497021	18497280	+	0	NA	Intergenic	Intergenic	20361	NM_001040078	654346		NM_001040078	ENSG00000171916	LGALS9C	Gal-9B|LGALS9B	galectin 9C	protein-coding
180391	chr5	9537251	9537550	+	0	NA	intron (NM_003966, intron 1 of 22)	intron (NM_003966, intron 1 of 22)	8675	NM_003966	9037		NM_003966	ENSG00000112902	SEMA5A	SEMAF|semF	semaphorin 5A	protein-coding
169324	chr3	159805271	159805430	+	0	NA	intron (NM_014575, intron 2 of 7)	intron (NM_014575, intron 2 of 7)	-34511	NM_001197109	29970		NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
176074	chr4	82814751	82814850	+	0	NA	Intergenic	Intergenic	-15943	NM_024906	79966		NM_024906	ENSG00000145284	SCD5	ACOD4|DFNA79|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
56004	chr12	110306751	110307050	+	0	NA	intron (NM_170665, intron 5 of 19)	AluJb|SINE|Alu	25653	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
32834	chr10	110017021	110017480	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-8869	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
33354	chr10	117165171	117165350	+	0	NA	intron (NR_121650, intron 1 of 1)	intron (NR_121650, intron 1 of 1)	2514	NR_037436	100500893		NR_037436	ENSG00000266782	MIR3663	-	microRNA 3663	ncRNA
11998	chr1	95071001	95071200	+	0	NA	intron (NM_144988, intron 1 of 3)	MIR|SINE|MIR	1851	NM_001305242	199857		NM_144988	ENSG00000172339	ALG14	CMS15|IDDEBF|MEPCA	ALG14 UDP-N-acetylglucosaminyltransferase subunit	protein-coding
237203	chrX	108022751	108023000	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-22095	NM_001170553	340547		NM_182607	ENSG00000101842	VSIG1	1700062D20Rik|GPA34|dJ889N15.1	V-set and immunoglobulin domain containing 1	protein-coding
198917	chr6	110179701	110181430	+	0	NA	promoter-TSS (NM_003931)	promoter-TSS (NM_003931)	138	NM_015891	51362		NM_015891	ENSG00000168438	CDC40	EHB3|PCH15|PRP17|PRPF17	cell division cycle 40	protein-coding
4266	chr1	19656121	19656500	+	0	NA	intron (NM_001204089, intron 3 of 3)	L2b|LINE|L2	-8565	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
119888	chr19	41544551	41545100	+	0	NA	Intergenic	LTR5A|LTR|ERVK	-4693	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
229999	chr9	126876651	126876750	+	0	NA	intron (NM_001099270, intron 1 of 1)	L1M5|LINE|L1	16061	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
194057	chr6	31857201	31857580	+	0	NA	TTS (NM_000434).3	TTS (NM_000434).3	5431	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
77698	chr15	85666071	85666880	+	0	NA	intron (NM_007200, intron 13 of 36)	L1PA6|LINE|L1	46525	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
100701	chr17	63834551	63836330	+	0	NA	exon (NM_001098426, exon 5 of 13)	exon (NM_001098426, exon 5 of 13)	3288	NM_001330440	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
136294	chr2	174771621	174772900	+	0	NA	Intergenic	Intergenic	-7788	NM_000079	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
213470	chr7	138999601	138999800	+	0	NA	Intergenic	Intergenic	-18311	NM_020910	57670		NM_020910	ENSG00000122778	KIAA1549	RP86	KIAA1549	protein-coding
26259	chr10	14661051	14661580	+	0	NA	intron (NM_001282695, intron 2 of 5)	MLT2B1|LTR|ERVL	-56914	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
208766	chr7	73545921	73546180	+	0	NA	intron (NM_001707, intron 2 of 5)	AluY|SINE|Alu	11186	NR_036682	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
161910	chr3	45988371	45988700	+	0	NA	intron (NM_024513, intron 1 of 17)	intron (NM_024513, intron 1 of 17)	7289	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
51600	chr12	52817751	52817850	+	0	NA	Intergenic	MIRb|SINE|MIR	-3684	NM_002272	3851		NM_002272	ENSG00000170477	KRT4	CK-4|CK4|CYK4|K4|WSN1	keratin 4	protein-coding
62423	chr13	99303251	99303350	+	0	NA	intron (NM_004951, intron 1 of 1)	intron (NM_004951, intron 1 of 1)	4099	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
156503	chr22	41300721	41302000	+	0	NA	promoter-TSS (NM_017590)	promoter-TSS (NM_017590)	-165	NM_017590	23264		NM_017590	ENSG00000100403	ZC3H7B	ROXAN1|RoXaN	zinc finger CCCH-type containing 7B	protein-coding
185213	chr5	120457921	120458500	+	0	NA	Intergenic	LTR13|LTR|ERVK	-6068	NM_016644	51334		NM_016644	ENSG00000184838	PRR16	DSC54|LARGEN	proline rich 16	protein-coding
159700	chr3	15603551	15603650	+	0	NA	intron (NM_001281725, intron 1 of 3)	AluY|SINE|Alu	1631	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
217514	chr8	29225721	29225980	+	0	NA	intron (NM_015254, intron 2 of 39)	intron (NM_015254, intron 2 of 39)	37220	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
236097	chrX	56799921	56800180	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-62466	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
32017	chr10	101007151	101007650	+	0	NA	TTS (NM_001195263)	TTS (NM_001195263)	4903	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
62375	chr13	99239601	99240080	+	0	NA	intron (NM_177967, intron 2 of 6)	intron (NM_177967, intron 2 of 6)	18588	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
44395	chr11	103090301	103090500	+	0	NA	intron (NM_032299, intron 1 of 7)	intron (NM_032299, intron 1 of 7)	1760	NM_032299	84259		NM_032299	ENSG00000137692	DCUN1D5	DCNL5|SCCRO5	defective in cullin neddylation 1 domain containing 5	protein-coding
42089	chr11	67505601	67506690	+	0	NA	promoter-TSS (NM_004910)	promoter-TSS (NM_004910)	-782	NM_001130848	9600		NM_004910	ENSG00000110697	PITPNM1	DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9	phosphatidylinositol transfer protein membrane associated 1	protein-coding
106099	chr18	9154571	9154930	+	0	NA	intron (NM_001204056, intron 1 of 11)	L2|LINE|L2	17187	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
129149	chr2	65553221	65553580	+	0	NA	Intergenic	Intergenic	-120801	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
177423	chr4	112510051	112510350	+	0	NA	Intergenic	(G)n|Simple_repeat|Simple_repeat	-5179	NR_161159	105377372		NR_161159		NEUROG2-AS1	-	NEUROG2 and ZGRF1 antisense RNA 1	ncRNA
185982	chr5	133322001	133322300	+	0	NA	intron (NM_015082, intron 4 of 15)	intron (NM_015082, intron 4 of 15)	105556	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
107752	chr18	50320821	50321080	+	0	NA	Intergenic	L1ME2|LINE|L1	-32628	NM_001101654	30827		NM_014593	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
89975	chr16	89827801	89828850	+	0	NA	promoter-TSS (NM_032451)	promoter-TSS (NM_032451)	-150	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
231160	chr9	129880601	129881000	+	0	NA	3' UTR (NM_001008563, exon 26 of 26)	3' UTR (NM_001008563, exon 26 of 26)	11195	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
133857	chr2	128317371	128319280	+	0	NA	exon (NM_004807, exon 1 of 2)	exon (NM_004807, exon 1 of 2)	543	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
14796	chr1	146139151	146139530	+	0	NA	intron (NM_001302371, intron 5 of 89)	AluY|SINE|Alu	5464	NM_001302371	100132406		NM_001039703	ENSG00000271425	NBPF10	AB6|AG1|NBPF9	NBPF member 10	protein-coding
7190	chr1	32271701	32271900	+	0	NA	intron (NM_005356, intron 1 of 12)	intron (NM_005356, intron 1 of 12)	-2311	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
203859	chr7	1461171	1461430	+	0	NA	Intergenic	Intergenic	-1830	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
181208	chr5	39162271	39162780	+	0	NA	intron (NM_199335, intron 2 of 17)	AluSc|SINE|Alu	57038	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
76152	chr15	72663971	72664430	+	0	NA	intron (NM_018652, intron 12 of 17)	intron (NM_018652, intron 12 of 17)	9503	NM_018652	55889		NM_018652	ENSG00000215186	GOLGA6B	GOLGA|GOLGA6D	golgin A6 family member B	protein-coding
147868	chr20	62821851	62822250	+	0	NA	intron (NM_001853, intron 8 of 31)	intron (NM_001853, intron 8 of 31)	5000	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
131666	chr2	97665701	97666100	+	0	NA	Intergenic	AluJb|SINE|Alu	-1856	NM_005735	10120		NM_005735	ENSG00000115073	ACTR1B	ARP1B|CTRN2|PC3	actin related protein 1B	protein-coding
168980	chr3	152401801	152402250	+	0	NA	intron (NM_001314057, intron 3 of 11)	AluY|SINE|Alu	-61035	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
102635	chr17	76024121	76025080	+	0	NA	intron (NM_001320747, intron 1 of 21)	intron (NM_001320747, intron 1 of 21)	2706	NM_001320747	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
149701	chr21	33998401	33998900	+	0	NA	Intergenic	Intergenic	22268	NR_134561	101928126		NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
1760	chr1	6021821	6022080	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	-4383	NM_172130	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
106142	chr18	9516301	9516750	+	0	NA	intron (NM_006788, intron 2 of 9)	intron (NM_006788, intron 2 of 9)	41012	NM_006788	10928		NM_006788	ENSG00000017797	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
130563	chr2	85728921	85729400	+	0	NA	Intergenic	Intergenic	-24831	NM_032827	84913		NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
114184	chr19	11399871	11400030	+	0	NA	exon (NM_001035223, exon 16 of 19)	exon (NM_001035223, exon 16 of 19)	-15636	NR_033663	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
44360	chr11	102451271	102452200	+	0	NA	intron (NM_052932, intron 1 of 4)	intron (NM_052932, intron 1 of 4)	1030	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
129092	chr2	65118601	65119000	+	0	NA	intron (NM_004161, intron 1 of 5)	intron (NM_004161, intron 1 of 5)	11306	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
70241	chr14	101442071	101442830	+	0	NA	intron (NR_135240, intron 1 of 1)	CpG	374	NR_135240	100507277		NR_135240	ENSG00000259082	LINC02314	-	long intergenic non-protein coding RNA 2314	ncRNA
36899	chr11	10783821	10784280	+	0	NA	Intergenic	Intergenic	17558	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
106393	chr18	13392201	13392400	+	0	NA	intron (NM_001378099, intron 3 of 6)	intron (NM_001378099, intron 3 of 6)	35234	NR_040031	100288122		NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
193710	chr6	31162151	31162650	+	0	NA	intron (NM_001077511, intron 3 of 3).7	intron (NM_001077511, intron 3 of 3).7	3811	NM_001318908	6941		NM_007109	ENSG00000137310	TCF19	SC1|TCF-19	transcription factor 19	protein-coding
207031	chr7	38796901	38797150	+	0	NA	intron (NM_080631, intron 6 of 27)	intron (NM_080631, intron 6 of 27)	-109936	NR_028347	340286		NM_001105282	ENSG00000164556	CFAP144P1	FAM183B|FAM183BP|THEG6	CFAP144 pseudogene 1	pseudo
117530	chr19	20453471	20453780	+	0	NA	Intergenic	L1M3a|LINE|L1	-28660	NR_036455	664701		NM_001039884		ZNF826P	ZNF826	zinc finger protein 826, pseudogene	pseudo
207304	chr7	44021371	44022030	+	0	NA	Intergenic	Intergenic	-2506	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
150842	chr21	44057871	44058030	+	0	NA	intron (NM_003274, intron 5 of 22)	intron (NM_003274, intron 5 of 22)	-16374	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
65114	chr14	44895521	44895780	+	0	NA	Intergenic	L1MA10|LINE|L1	-1625	NM_001017923	122525		NM_001017923	ENSG00000179476	C14orf28	DRIP-1|DRIP1|c14_5270	chromosome 14 open reading frame 28	protein-coding
88866	chr16	87691371	87692180	+	0	NA	intron (NM_020655, intron 4 of 4)	intron (NM_020655, intron 4 of 4)	74211	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
199020	chr6	111122501	111123180	+	0	NA	intron (NM_018593, intron 1 of 5)	intron (NM_018593, intron 1 of 5)	9006	NR_145796	109623478		NR_145796		SNORD166	-	small nucleolar RNA, C/D box 166	snoRNA
33633	chr10	119661801	119662200	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	10620	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
204265	chr7	2633011	2634800	+	0	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	1919	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
66347	chr14	61448601	61449250	+	0	NA	intron (NM_006255, intron 4 of 13)	intron (NM_006255, intron 4 of 13)	121269	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
189500	chr5	173236951	173237250	+	0	NA	Intergenic	CpG	-1894	NM_004387	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
22492	chr1	221733251	221734130	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	3210	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
224828	chr9	26955071	26955500	+	0	NA	TTS (NR_121605)	TTS (NR_121605)	1022	NR_121605	101929602		NR_121605	ENSG00000234676	IFT74-AS1	-	IFT74 antisense RNA 1	ncRNA
138495	chr2	207149201	207149400	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	-15163	NM_001270944	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
147896	chr20	62885771	62886180	+	0	NA	intron (NM_001193369, intron 15 of 15)	intron (NM_001193369, intron 15 of 15)	-3072	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
131698	chr2	97739171	97740000	+	0	NA	3' UTR (NM_001378594, exon 13 of 13)	3' UTR (NM_001378594, exon 13 of 13)	6285	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
186703	chr5	138761071	138761350	+	0	NA	intron (NM_001323982, intron 2 of 18)	L1ME1|LINE|L1	-7286	NR_134244	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
100639	chr17	63679451	63679950	+	0	NA	intron (NM_001363768, intron 7 of 16)	AluJb|SINE|Alu	20425	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
75466	chr15	65877751	65878050	+	0	NA	exon (NM_001206836, exon 3 of 5)	exon (NM_001206836, exon 3 of 5)	8409	NM_001206836	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
230637	chr9	128658071	128658230	+	0	NA	intron (NR_031672, intron 2 of 2).4	intron (NR_031672, intron 2 of 2).4	-1300	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
126526	chr2	28532521	28532780	+	0	NA	intron (NM_153021, intron 9 of 57)	intron (NM_153021, intron 9 of 57)	-33707	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
163619	chr3	52036771	52037200	+	0	NA	Intergenic	MIRc|SINE|MIR	19586	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
166677	chr3	120285021	120285330	+	0	NA	promoter-TSS (NM_153002)	promoter-TSS (NM_153002)	47	NM_001168271	165829		NM_153002	ENSG00000175697	GPR156	DFNB121|GABABL|PGR28	G protein-coupled receptor 156	protein-coding
79014	chr16	51301	51500	+	0	NA	intron (NM_016310, intron 2 of 2)	intron (NM_016310, intron 2 of 2)	2208	NM_016310	51728		NM_016310	ENSG00000161980	POLR3K	C11|C11-RNP3|HLD21|My010|RPC10|RPC11|RPC12.5	RNA polymerase III subunit K	protein-coding
45904	chr11	120343501	120343750	+	0	NA	intron (NM_015313, intron 1 of 40)	intron (NM_015313, intron 1 of 40)	7212	NM_015313	23365		NM_015313	ENSG00000196914	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor 12	protein-coding
201800	chr6	149998901	150000180	+	0	NA	intron (NR_024045, intron 3 of 3)	intron (NR_024045, intron 3 of 3)	5604	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
8392	chr1	40389201	40390630	+	0	NA	intron (NM_001198978, intron 1 of 9)	(CCCCCA)n|Simple_repeat|Simple_repeat	-3430	NM_001198979	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
91694	chr17	6421821	6422280	+	0	NA	Intergenic	MIR3|SINE|MIR	13071	NM_001033054	23746		NM_014336	ENSG00000129221	AIPL1	AIPL2|LCA4	aryl hydrocarbon receptor interacting protein like 1	protein-coding
78780	chr15	99420921	99421580	+	0	NA	Intergenic	L1PA5|LINE|L1	-144167	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
74126	chr15	55219571	55219930	+	0	NA	intron (NM_183236, intron 6 of 6)	Charlie25|DNA|hAT-Charlie	-22809	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
79837	chr16	1442951	1443050	+	0	NA	intron (NM_001143980, intron 4 of 16)	intron (NM_001143980, intron 4 of 16)	1489	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
132131	chr2	101705201	101705880	+	0	NA	intron (NM_001384572, intron 1 of 29)	MER5C|DNA|hAT-Charlie	7275	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
58110	chr12	124852171	124852530	+	0	NA	intron (NR_160422, intron 1 of 11)	intron (NR_160422, intron 1 of 11)	11514	NM_001367981	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
49536	chr12	26125671	26126500	+	0	NA	Intergenic	CpG	-1048	NM_030762	79365		NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|FNSS1|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding
23477	chr1	228624371	228624530	+	0	NA	promoter-TSS (NR_023363).7	promoter-TSS (NR_023363).7	-665	NR_023366	100169755		NR_023366	ENSG00000200381	RNA5S4	RN5S4	RNA, 5S ribosomal 4	rRNA
163787	chr3	52394221	52394980	+	0	NA	exon (NM_015512, exon 67 of 78)	exon (NM_015512, exon 67 of 78)	15408	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
38943	chr11	47512001	47512400	+	0	NA	intron (NM_001376409, intron 1 of 15)	AluSc8|SINE|Alu	11631	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
112366	chr19	5977371	5979580	+	0	NA	promoter-TSS (NM_007322)	promoter-TSS (NM_007322)	72	NR_046376	100128568		NR_046376	ENSG00000266983	RANBP3-DT	-	RANBP3 divergent transcript	ncRNA
190853	chr6	1624651	1625400	+	0	NA	intron (NM_001253846, intron 9 of 10)	CpG-23107	15110	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
173389	chr4	7966501	7966930	+	0	NA	3' UTR (NM_001130084, exon 20 of 20)	3' UTR (NM_001130084, exon 20 of 20)	-26789	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
193567	chr6	30649571	30650100	+	0	NA	exon (NM_001161376, exon 2 of 6).3	exon (NM_001161376, exon 2 of 6).3	2702	NM_001161376	221545		NM_145029	ENSG00000204564	C6orf136	-	chromosome 6 open reading frame 136	protein-coding
96090	chr17	39612751	39614130	+	0	NA	Intergenic	Intergenic	-5520	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
147437	chr20	58907821	58908930	+	0	NA	intron (NM_001077488, intron 6 of 12)	intron (NM_001077488, intron 6 of 12)	16212	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
94229	chr17	28656301	28656700	+	0	NA	intron (NR_045585, intron 1 of 2)	AluSx1|SINE|Alu	5406	NM_006923	6388		NM_006923	ENSG00000132581	SDF2	-	stromal cell derived factor 2	protein-coding
29797	chr10	72290321	72290580	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	16526	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
186954	chr5	139659451	139659950	+	0	NA	intron (NM_001317207, intron 1 of 2)	intron (NM_001317207, intron 1 of 2)	145	NM_001317206	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
31740	chr10	97760471	97760830	+	0	NA	3' UTR (NM_001174122, exon 9 of 9)	3' UTR (NM_001174122, exon 9 of 9)	11349	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
92496	chr17	8880151	8880850	+	0	NA	3' UTR (NM_014308, exon 19 of 19)	3' UTR (NM_014308, exon 19 of 19)	-12823	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
149639	chr21	33540271	33540830	+	0	NA	intron (NM_001136006, intron 1 of 21)	intron (NM_001136006, intron 1 of 21)	1567	NM_175085	2618		NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase	protein-coding
71983	chr15	25795201	25795400	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	53525	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
96065	chr17	39594051	39594350	+	0	NA	Intergenic	AluJb|SINE|Alu	13720	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
176938	chr4	102868171	102869880	+	0	NA	promoter-TSS (NM_001008388)	promoter-TSS (NM_001008388)	33	NM_001008388	493856		NM_001008388	ENSG00000145354	CISD2	ERIS|Miner1|NAF-1|WFS2|ZCD2	CDGSH iron sulfur domain 2	protein-coding
17683	chr1	157773751	157774050	+	0	NA	intron (NM_030764, intron 2 of 11)	intron (NM_030764, intron 2 of 11)	3232	NR_125358	79368		NM_030764	ENSG00000132704	FCRL2	CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C	Fc receptor like 2	protein-coding
208798	chr7	73605701	73606100	+	0	NA	intron (NR_134541, intron 6 of 15)	intron (NR_134541, intron 6 of 15)	18622	NM_032953	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
561	chr1	1253101	1253900	+	0	NA	TTS (NM_058167)	TTS (NM_058167)	-6778	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
186604	chr5	138517121	138517400	+	0	NA	intron (NM_001291974, intron 4 of 10)	AluSx3|SINE|Alu	24451	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
229124	chr9	114451451	114451830	+	0	NA	intron (NM_015404, intron 3 of 11)	intron (NM_015404, intron 3 of 11)	-25472	NM_001346890	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
121362	chr19	46847271	46847830	+	0	NA	intron (NM_021575, intron 1 of 3)	L1MB7|LINE|L1	2764	NM_001301076	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
118165	chr19	35027451	35027550	+	0	NA	Intergenic	MIR|SINE|MIR	-2970	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
115322	chr19	15108551	15109480	+	0	NA	intron (NM_001300910, intron 1 of 7)	intron (NM_001300910, intron 1 of 7)	1614	NM_001300910	85360		NM_033025	ENSG00000105137	SYDE1	7h3|SYD1	synapse defective Rho GTPase homolog 1	protein-coding
9123	chr1	45344871	45345780	+	0	NA	exon (NM_001320800, exon 10 of 10)	exon (NM_001320800, exon 10 of 10)	-4855	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
123815	chr19	55175101	55175500	+	0	NA	exon (NM_003180, exon 6 of 9)	exon (NM_003180, exon 6 of 9)	4048	NM_001297774	6861		NM_003180	ENSG00000129990	SYT5	-	synaptotagmin 5	protein-coding
151434	chr21	46132421	46132880	+	0	NA	3' UTR (NM_001849, exon 28 of 28)	3' UTR (NM_001849, exon 28 of 28)	-18725	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
101230	chr17	66161821	66162080	+	0	NA	intron (NM_001353127, intron 4 of 26)	MSTD|LTR|ERVL-MaLR	29942	NM_001302891	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
83566	chr16	28111671	28111830	+	0	NA	intron (NM_001270940, intron 18 of 24)	intron (NM_001270940, intron 18 of 24)	-48036	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
44025	chr11	95069621	95070480	+	0	NA	non-coding (NR_103726, exon 2 of 2)	non-coding (NR_103726, exon 2 of 2)	3173	NR_103726	10929		NM_032102	ENSG00000263465	SRSF8	DSM-1|SFRS2B|SRP46	serine and arginine rich splicing factor 8	protein-coding
87764	chr16	75265001	75265580	+	0	NA	intron (NM_001170714, intron 1 of 7)	CpG	717	NM_001170714	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
70958	chr14	104687871	104688030	+	0	NA	Intergenic	Intergenic	-1656	NM_032714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
129176	chr2	68164321	68164780	+	0	NA	intron (NM_001329916, intron 5 of 5)	AluJr|SINE|Alu	6662	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
136788	chr2	181470501	181470900	+	0	NA	intron (NM_000885, intron 2 of 27)	intron (NM_000885, intron 2 of 27)	13314	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
58451	chr12	132082251	132082550	+	0	NA	Intergenic	Intergenic	-1883	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
2265	chr1	8921551	8922250	+	0	NA	Intergenic	HERVFH21-int|LTR|ERV1	-23968	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
68122	chr14	75512401	75512600	+	0	NA	Intergenic	Intergenic	-9969	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
229670	chr9	124419271	124420200	+	0	NA	Intergenic	Intergenic	-4293	NM_002799	5695		NM_002799	ENSG00000136930	PSMB7	-	proteasome 20S subunit beta 7	protein-coding
184093	chr5	93603851	93604380	+	0	NA	Intergenic	CpG	16673	NR_031754	100313887		NR_031754	ENSG00000284336	MIR2277	mir-2277	microRNA 2277	ncRNA
13642	chr1	116503901	116505130	+	0	NA	Intergenic	Intergenic	-25689	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
185495	chr5	131310151	131310750	+	0	NA	intron (NM_001038702, intron 1 of 4)	L1PA3|LINE|L1	46397	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
187318	chr5	141623071	141623630	+	0	NA	intron (NR_149164, intron 13 of 13)	intron (NR_149164, intron 13 of 13)	-4350	NM_001079812	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
46269	chr11	124777301	124777700	+	0	NA	intron (NM_001308027, intron 1 of 3)	intron (NM_001308027, intron 1 of 3)	-1258	NM_001312920	79684		NM_024631	ENSG00000120458	MSANTD2	C11orf61	Myb/SANT DNA binding domain containing 2	protein-coding
65535	chr14	51919121	51919780	+	0	NA	promoter-TSS (NR_126331)	promoter-TSS (NR_126331)	-879	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
47792	chr12	6571871	6572430	+	0	NA	intron (NM_001273, intron 38 of 39)	AluSz|SINE|Alu	-3859	NM_001258308	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
59862	chr13	30615121	30615580	+	0	NA	intron (NM_001370340, intron 1 of 4)	MER46C|DNA|TcMar-Tigger	2237	NM_001370340	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
192474	chr6	24933771	24934450	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	1850	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
143453	chr20	30376641	30377900	+	0	NA	non-coding (NR_003579, exon 1 of 8)	non-coding (NR_003579, exon 1 of 8)	106	NR_145491	284802		NM_207350		FRG1BP	C20orf80|FRG1B|bA348I14.2	FSHD region gene 1 family member B, pseudogene	pseudo
104631	chr17	81436421	81437030	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	14463	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
72874	chr15	40284921	40285200	+	0	NA	Intergenic	Intergenic	-2474	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
170012	chr3	180913971	180914200	+	0	NA	intron (NM_001013438, intron 1 of 15)	intron (NM_001013438, intron 1 of 15)	1414	NM_001363882	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
235308	chrX	42732601	42732800	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	45463	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
133678	chr2	127078601	127079100	+	0	NA	intron (NM_139345, intron 1 of 15)	intron (NM_139345, intron 1 of 15)	3215	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
101384	chr17	67341251	67341550	+	0	NA	intron (NM_174871, intron 9 of 9)	AluSz|SINE|Alu	25177	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
112730	chr19	7337151	7338180	+	0	NA	Intergenic	MIR|SINE|MIR	-11272	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
238383	chrX	149952221	149952480	+	0	NA	intron (NR_027456, intron 7 of 11)	AluJr|SINE|Alu	13802	NR_027456	100272228		NR_027456	ENSG00000235703	EOLA2-DT	LINC00894	EOLA2 divergent transcript	ncRNA
27620	chr10	32937851	32938430	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	-2582	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
223583	chr8	144275801	144276000	+	0	NA	intron (NM_015201, intron 3 of 15)	intron (NM_015201, intron 3 of 15)	9447	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
206618	chr7	35848801	35849000	+	0	NA	intron (NM_001788, intron 2 of 12)	intron (NM_001788, intron 2 of 12)	47681	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
74058	chr15	52546871	52547030	+	0	NA	TTS (NM_001306195)	TTS (NM_001306195)	-17900	NM_000259	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
40925	chr11	65219471	65219930	+	0	NA	intron (NR_033396, intron 3 of 9)	L2a|LINE|L2	5860	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
97537	chr17	44062101	44062300	+	0	NA	intron (NM_001369486, intron 1 of 3)	AluY|SINE|Alu	4471	NM_001369484	124801		NM_152344	ENSG00000161654	LSM12	PNAS-135	LSM12 homolog	protein-coding
1924	chr1	6474871	6476300	+	0	NA	intron (NM_001042665, intron 3 of 20)	intron (NM_001042665, intron 3 of 20)	-9390	NM_148966	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
66149	chr14	60311501	60311700	+	0	NA	Intergenic	L1MC4|LINE|L1	-11596	NR_146481	101927729		NR_146481	ENSG00000258556	LINC02322	-	long intergenic non-protein coding RNA 2322	ncRNA
165225	chr3	72996271	72997860	+	0	NA	exon (NM_001318028, exon 1 of 4)	exon (NM_001318028, exon 1 of 4)	254	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
145104	chr20	38746001	38746600	+	0	NA	Intergenic	AluJo|SINE|Alu	-2160	NM_024855	79913		NM_024855	ENSG00000101442	ACTR5	Arp5|INO80M	actin related protein 5	protein-coding
226574	chr9	72586471	72587030	+	0	NA	intron (NM_138691, intron 2 of 23)	intron (NM_138691, intron 2 of 23)	65142	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
231313	chr9	130068651	130068950	+	0	NA	intron (NM_001136557, intron 1 of 19)	AluSz|SINE|Alu	14894	NM_001136557	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
206485	chr7	33055771	33055930	+	0	NA	intron (NM_001374336, intron 1 of 10)	AluJo|SINE|Alu	6926	NM_001002010	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
47981	chr12	6901171	6901700	+	0	NA	Intergenic	AluY|SINE|Alu	-3387	NM_006992	10233		NM_006992	ENSG00000010626	LRRC23	LRPB7	leucine rich repeat containing 23	protein-coding
108314	chr18	63416001	63416400	+	0	NA	intron (NM_004869, intron 1 of 10)	intron (NM_004869, intron 1 of 10)	6276	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
110860	chr19	2613421	2614730	+	0	NA	intron (NM_052847, intron 2 of 4)	CpG	-16640	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
18932	chr1	168472301	168472800	+	0	NA	intron (NR_125956, intron 4 of 4)	intron (NR_125956, intron 4 of 4)	23094	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
5421	chr1	25551651	25552230	+	0	NA	intron (NM_015627, intron 1 of 8)	intron (NM_015627, intron 1 of 8)	8334	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
107880	chr18	55892871	55893030	+	0	NA	intron (NR_110755, intron 3 of 3)	L1PA3|LINE|L1	27249	NR_110755	101927273		NR_110755	ENSG00000260930	LINC01416	-	long intergenic non-protein coding RNA 1416	ncRNA
24350	chr1	240323251	240323350	+	0	NA	intron (NM_020066, intron 8 of 17)	AluSx1|SINE|Alu	231417	NM_001348094	56776		NM_020066	ENSG00000155816	FMN2	-	formin 2	protein-coding
215923	chr8	8238321	8238900	+	0	NA	non-coding (NR_024362, exon 8 of 8).2	non-coding (NR_024362, exon 8 of 8).2	10040	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
166858	chr3	123439721	123439800	+	0	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	9330	NM_001378259	111		NM_183357	ENSG00000173175	ADCY5	AC5|DSKOD|FDFM	adenylate cyclase 5	protein-coding
137833	chr2	200508021	200508530	+	0	NA	intron (NM_001321547, intron 1 of 6)	AluSx|SINE|Alu	1793	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
238089	chrX	136496571	136498130	+	0	NA	promoter-TSS (NM_014500)	promoter-TSS (NM_014500)	-242	NM_014500	27336		NM_014500	ENSG00000102241	HTATSF1	TAT-SF1|TATSF1|dJ196E23.2	HIV-1 Tat specific factor 1	protein-coding
108087	chr18	61554151	61554950	+	0	NA	exon (NM_031891, exon 12 of 12)	exon (NM_031891, exon 12 of 12)	-193626	NR_103449	100996669		NR_103449		LINC01544	-	long intergenic non-protein coding RNA 1544	ncRNA
16695	chr1	155208391	155209750	+	0	NA	exon (NM_002455, exon 1 of 8)	exon (NM_002455, exon 1 of 8)	371	NM_002455	4580		NM_002455	ENSG00000173171	MTX1	MTX|MTXN	metaxin 1	protein-coding
82454	chr16	16369171	16369550	+	0	NA	TTS (NR_106766).3	TTS (NR_106766).3	484	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
212714	chr7	129794121	129794380	+	0	NA	Intergenic	Intergenic	-19236	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
221963	chr8	129973351	129974050	+	0	NA	intron (NM_001353269, intron 1 of 10)	FLAM_A|SINE|Alu	-33889	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
145472	chr20	43751051	43751880	+	0	NA	Intergenic	Intergenic	-24463	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
69519	chr14	96275521	96275780	+	0	NA	Intergenic	Intergenic	19440	NM_000710	623		NM_000710	ENSG00000100739	BDKRB1	B1BKR|B1R|BKB1R|BKR1|BRADYB1	bradykinin receptor B1	protein-coding
40717	chr11	64799521	64800350	+	0	NA	intron (NM_004579, intron 12 of 31)	intron (NM_004579, intron 12 of 31)	3279	NM_004579	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
6834	chr1	31024621	31024880	+	0	NA	intron (NM_014676, intron 3 of 21)	intron (NM_014676, intron 3 of 21)	40967	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
92285	chr17	8077621	8077880	+	0	NA	intron (NM_001139, intron 8 of 14)	intron (NM_001139, intron 8 of 14)	9966	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
30789	chr10	84360251	84360350	+	0	NA	intron (NM_001284241, intron 1 of 2)	L1MC5a|LINE|L1	31711	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
235971	chrX	53685971	53686930	+	0	NA	intron (NM_031407, intron 1 of 83)	CpG-29740	269	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
140538	chr2	233250271	233250430	+	0	NA	Intergenic	Intergenic	-1221	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
96320	chr17	40011001	40011200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4340	NR_168490	1440		NM_000759	ENSG00000108342	CSF3	C17orf33|CSF3OS|GCSF	colony stimulating factor 3	protein-coding
16660	chr1	155175251	155176200	+	0	NA	intron (NM_001256599, intron 2 of 9)	intron (NM_001256599, intron 2 of 9)	971	NM_001256601	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
208330	chr7	66206771	66207480	+	0	NA	intron (NM_003596, intron 1 of 5)	L2-1_Crp|LINE|L2	1791	NM_003596	8460		NM_003596	ENSG00000169902	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
231019	chr9	129579851	129580750	+	0	NA	Intergenic	Intergenic	-28584	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
101017	chr17	64773651	64773750	+	0	NA	intron (NR_026899, intron 3 of 12)	intron (NR_026899, intron 3 of 12)	-7059	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
9316	chr1	46531021	46531350	+	0	NA	TTS (NM_001357063)	TTS (NM_001357063)	4330	NM_001357063	105378696		NM_001357063	ENSG00000282881	TMEM275	-	transmembrane protein 275	protein-coding
27571	chr10	32363321	32363580	+	0	NA	intron (NR_104163, intron 1 of 1)	intron (NR_104163, intron 1 of 1)	15319	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
82232	chr16	15032421	15033030	+	0	NA	intron (NM_001324019, intron 17 of 22)	intron (NM_001324019, intron 17 of 22)	-22328	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
202261	chr6	156984271	156984630	+	0	NA	intron (NM_001371656, intron 6 of 20)	intron (NM_001371656, intron 6 of 20)	-51977	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
228262	chr9	98034301	98035150	+	0	NA	Intergenic	Intergenic	-22007	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
133351	chr2	113965621	113966130	+	0	NA	Intergenic	Intergenic	-3447	NR_148507	440900		NR_034128	ENSG00000234199	LINC01191	VIN|lnc-ACTR3	long intergenic non-protein coding RNA 1191	ncRNA
128551	chr2	60879701	60879900	+	0	NA	intron (NR_033980, intron 1 of 2)	AluSg7|SINE|Alu	1514	NR_033980	400957		NR_033980	ENSG00000228414	REL-DT	LINC01185	REL divergent transcript	ncRNA
102552	chr17	75842321	75842580	+	0	NA	exon (NM_199242, exon 6 of 32)	exon (NM_199242, exon 6 of 32)	1954	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
118504	chr19	35950671	35951030	+	0	NA	intron (NR_136525, intron 1 of 4)	intron (NR_136525, intron 1 of 4)	3735	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
180436	chr5	10489751	10490130	+	0	NA	Intergenic	Intergenic	11903	NR_106747	102465138		NR_106747	ENSG00000277073	MIR6131	hsa-mir-6131	microRNA 6131	ncRNA
39877	chr11	62483971	62484130	+	0	NA	intron (NM_024060, intron 5 of 5)	AluY|SINE|Alu	61614	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
28193	chr10	44857501	44858030	+	0	NA	intron (NR_033842, intron 2 of 7)	intron (NR_033842, intron 2 of 7)	-53551	NM_001345926	643236		NM_001123376	ENSG00000187783	TMEM72	C10orf127|KSP37	transmembrane protein 72	protein-coding
138213	chr2	202708051	202708350	+	0	NA	intron (NM_173511, intron 2 of 7)	L1MB1|LINE|L1	73231	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
145565	chr20	44326471	44327230	+	0	NA	Intergenic	CpG	-10193	NM_178491	140902		NM_178491	ENSG00000101074	R3HDML	dJ881L22.3	R3H domain containing like	protein-coding
180897	chr5	34181001	34182000	+	0	NA	intron (NR_146599, intron 3 of 11)	intron (NR_146599, intron 3 of 11)	-8081	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
11064	chr1	85090301	85090900	+	0	NA	intron (NM_145172, intron 8 of 22)	intron (NM_145172, intron 8 of 22)	28273	NM_145172	126820		NM_145172	ENSG00000162643	DNAI3	DIC3|NYD-SP29|WDR63	dynein axonemal intermediate chain 3	protein-coding
201214	chr6	143541051	143542400	+	0	NA	Intergenic	Intergenic	20326	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
55471	chr12	104687551	104688630	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	96457	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
51479	chr12	52074271	52074430	+	0	NA	intron (NM_001098673, intron 3 of 3)	intron (NM_001098673, intron 3 of 3)	4372	NM_001098673	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
211490	chr7	105205571	105206380	+	0	NA	intron (NM_001350741, intron 2 of 16)	intron (NM_001350741, intron 2 of 16)	63102	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
81656	chr16	10964701	10966050	+	0	NA	intron (NM_001243403, intron 3 of 20)	intron (NM_001243403, intron 3 of 20)	20811	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
138982	chr2	218286441	218287900	+	0	NA	promoter-TSS (NM_001321427)	promoter-TSS (NM_001321427)	133	NM_001321429	64114		NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
212613	chr7	129218571	129219130	+	0	NA	Intergenic	Intergenic	-6180	NM_015328	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
57857	chr12	123279071	123279230	+	0	NA	Intergenic	(GTTTT)n|Simple_repeat|Simple_repeat	-6910	NR_073007	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
104709	chr17	81548021	81548350	+	0	NA	intron (NR_033338, intron 4 of 8)	intron (NR_033338, intron 4 of 8)	4168	NR_033338	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
234707	chrX	20463621	20463880	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-196841	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
192102	chr6	16705871	16706580	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	53959	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
109538	chr19	864921	865530	+	0	NA	Intergenic	Intergenic	5561	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
36525	chr11	6479801	6480000	+	0	NA	intron (NM_001242854, intron 3 of 7)	intron (NM_001242854, intron 3 of 7)	1431	NM_001376564	23647		NM_012402	ENSG00000132254	ARFIP2	POR1	ADP ribosylation factor interacting protein 2	protein-coding
26779	chr10	22991851	22992400	+	0	NA	intron (NM_173081, intron 10 of 18)	intron (NM_173081, intron 10 of 18)	64072	NM_001282746	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
208284	chr7	65980351	65981240	+	0	NA	intron (NR_120531, intron 1 of 10)	intron (NR_120531, intron 1 of 10)	1418	NM_001284290	2990		NM_000181	ENSG00000169919	GUSB	BG|MPS7	glucuronidase beta	protein-coding
73673	chr15	44734571	44735100	+	0	NA	Intergenic	Intergenic	-1693	NM_001301144	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
131283	chr2	96100101	96100580	+	0	NA	Intergenic	Intergenic	16231	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
127256	chr2	38699951	38700730	+	0	NA	intron (NM_138801, intron 4 of 6)	L1M2|LINE|L1	34226	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
134135	chr2	134169851	134170350	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	42975	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
184399	chr5	98906901	98907500	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-21362	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
75280	chr15	65067171	65067330	+	0	NA	intron (NM_001379429, intron 1 of 4)	intron (NM_001379429, intron 1 of 4)	741	NM_001307930	51285		NM_016563	ENSG00000103710	RASL12	RIS	RAS like family 12	protein-coding
211761	chr7	107205021	107205600	+	0	NA	intron (NM_001379513, intron 19 of 19)	intron (NM_001379513, intron 19 of 19)	36307	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
131912	chr2	98824321	98824780	+	0	NA	intron (NM_207362, intron 6 of 9)	intron (NM_207362, intron 6 of 9)	-52652	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
225721	chr9	36873221	36873800	+	0	NA	intron (NM_001280549, intron 6 of 7)	intron (NM_001280549, intron 6 of 7)	-9202	NR_039766	100616278		NR_039766	ENSG00000264922	MIR4540	-	microRNA 4540	ncRNA
133800	chr2	127803871	127804330	+	0	NA	intron (NM_001006623, intron 1 of 7)	AluY|SINE|Alu	7071	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
10600	chr1	67489771	67489930	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-59448	NM_001018069	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
235645	chrX	48519501	48519900	+	0	NA	intron (NM_001282167, intron 12 of 12)	L1ME4b|LINE|L1	-2108	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
161617	chr3	43222601	43223030	+	0	NA	Intergenic	Intergenic	-63697	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
70812	chr14	103549871	103550200	+	0	NA	Intergenic	Intergenic	12285	NM_001015049	9529		NM_004873	ENSG00000166170	BAG5	BAG-5|CMD2F	BAG cochaperone 5	protein-coding
200212	chr6	131255501	131255700	+	0	NA	intron (NM_138633, intron 2 of 2)	intron (NM_138633, intron 2 of 2)	5196	NM_138633	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
86740	chr16	67640571	67641130	+	0	NA	Intergenic	AluJo|SINE|Alu	-4294	NM_001317026	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
216827	chr8	22582921	22583200	+	0	NA	intron (NM_198042, intron 2 of 7)	intron (NM_198042, intron 2 of 7)	2585	NM_001368120	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
217963	chr8	38293671	38294230	+	0	NA	intron (NM_023034, intron 16 of 23)	AluSx1|SINE|Alu	-24718	NM_001354454	84513		NM_032483	ENSG00000147535	PLPP5	DPPL1|HTPAP|PPAPDC1B	phospholipid phosphatase 5	protein-coding
194281	chr6	32640601	32640800	+	0	NA	intron (NM_002122, intron 1 of 4)	intron (NM_002122, intron 1 of 4)	3294	NM_002122	3117		NM_002122	ENSG00000196735	HLA-DQA1	CELIAC1|DQ-A1|DQA1|HLA-DQA|HLA-DQA1*|HLA-DQB1	major histocompatibility complex, class II, DQ alpha 1	protein-coding
203698	chr7	1036651	1036950	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	-7746	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
200983	chr6	139372701	139374000	+	0	NA	exon (NM_001168389, exon 2 of 2)	exon (NM_001168389, exon 2 of 2)	863	NM_001168389	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
214151	chr7	144365801	144366000	+	0	NA	intron (NR_033942, intron 1 of 11)	intron (NR_033942, intron 1 of 11)	2267	NR_033942	728377		NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor 34, pseudogene	pseudo
224104	chr9	4574951	4575050	+	0	NA	intron (NM_004170, intron 8 of 11)	intron (NM_004170, intron 8 of 11)	84532	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
168687	chr3	150608601	150608830	+	0	NA	intron (NM_016275, intron 1 of 5)	(AGT)n|Simple_repeat|Simple_repeat	5394	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
97948	chr17	45224601	45225080	+	0	NA	intron (NM_005892, intron 1 of 26)	intron (NM_005892, intron 1 of 26)	2955	NM_005892	752		NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin like 1	protein-coding
159757	chr3	16285521	16287050	+	0	NA	intron (NM_001352980, intron 5 of 9)	intron (NM_001352980, intron 5 of 9)	21073	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
193548	chr6	30612671	30613030	+	0	NA	intron (NM_001376195, intron 2 of 19).6	intron (NM_001376195, intron 2 of 19).6	4393	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
54098	chr12	76083501	76084200	+	0	NA	intron (NM_139207, intron 1 of 15)	intron (NM_139207, intron 1 of 15)	835	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
185778	chr5	132396371	132397130	+	0	NA	Intergenic	Intergenic	-14179	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
96579	chr17	40489301	40490000	+	0	NA	intron (NM_032865, intron 2 of 12)	AluSq2|SINE|Alu	11973	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
102756	chr17	76275701	76276100	+	0	NA	non-coding (NR_130649, exon 18 of 19)	non-coding (NR_130649, exon 18 of 19)	10552	NM_182565	283991		NM_182565	ENSG00000185262	UBALD2	FAM100B	UBA like domain containing 2	protein-coding
130914	chr2	87470921	87472100	+	0	NA	intron (NR_146460, intron 2 of 2)	intron (NR_146460, intron 2 of 2)	1560	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
182875	chr5	69911201	69911400	+	0	NA	intron (NR_029426, intron 4 of 9).2	AluJo|SINE|Alu	-7280	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
60453	chr13	41018051	41018380	+	0	NA	intron (NM_001370332, intron 1 of 10)	intron (NM_001370332, intron 1 of 10)	1101	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
85198	chr16	46972071	46973000	+	0	NA	intron (NM_005880, intron 1 of 8)	intron (NM_005880, intron 1 of 8)	1139	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
178317	chr4	145618401	145620150	+	0	NA	promoter-TSS (NM_001375644)	promoter-TSS (NM_001375644)	-110	NM_001375644	166785		NM_172250	ENSG00000151611	MMAA	cblA	metabolism of cobalamin associated A	protein-coding
194000	chr6	31780601	31781000	+	0	NA	intron (NM_006295, intron 23 of 29).4	intron (NM_006295, intron 23 of 29).4	-3472	NM_025258	80737		NM_025258	ENSG00000204396	VWA7	C6orf27|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding
182340	chr5	59134871	59135030	+	0	NA	intron (NM_001364603, intron 5 of 15)	intron (NM_001364603, intron 5 of 15)	-95474	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
191680	chr6	13484221	13484880	+	0	NA	intron (NM_001242629, intron 1 of 1)	intron (NM_001242629, intron 1 of 1)	1633	NM_001242628	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
78491	chr15	92920321	92920580	+	0	NA	intron (NM_001042572, intron 2 of 12)	L1ME3G|LINE|L1	16051	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
195894	chr6	41707451	41708580	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	25595	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
78805	chr15	99500571	99500730	+	0	NA	Intergenic	Intergenic	-64767	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
158041	chr22	49935801	49936880	+	0	NA	Intergenic	(CGC)n|Simple_repeat|Simple_repeat	17706	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
126895	chr2	32362251	32362350	+	0	NA	intron (NM_016252, intron 1 of 73)	L1MC1|LINE|L1	5084	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
79638	chr16	1158401	1159080	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	5499	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
168719	chr3	150749301	150749730	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	-10530	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
147525	chr20	59252951	59254300	+	0	NA	intron (NM_178457, intron 5 of 5)	intron (NM_178457, intron 5 of 5)	-46986	NM_207032	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
22965	chr1	226068271	226068500	+	0	NA	intron (NR_002315, intron 3 of 3)	intron (NR_002315, intron 3 of 3)	5658	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
227490	chr9	91177571	91178680	+	0	NA	intron (NR_135306, intron 2 of 2)	intron (NR_135306, intron 2 of 2)	59063	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
236046	chrX	55715871	55716180	+	0	NA	Intergenic	LTR1A1|LTR|ERV1	-1724	NM_016656	10325		NM_006064	ENSG00000083750	RRAGB	RAGB|bA465E19.1	Ras related GTP binding B	protein-coding
97771	chr17	44533501	44534050	+	0	NA	Intergenic	Intergenic	-23709	NM_001466	2535		NM_001466	ENSG00000180340	FZD2	Fz2|OMOD2|fz-2|fzE2|hFz2	frizzled class receptor 2	protein-coding
227761	chr9	93109071	93109650	+	0	NA	intron (NR_160511, intron 3 of 4)	intron (NR_160511, intron 3 of 4)	13143	NM_001318011	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
198610	chr6	107728251	107728350	+	0	NA	intron (NM_001286408, intron 4 of 6)	intron (NM_001286408, intron 4 of 6)	3850	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
171387	chr3	196164871	196165230	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	22414	NR_034088	401109		NM_001001699	ENSG00000224652	LINC00885	-	long intergenic non-protein coding RNA 885	ncRNA
81899	chr16	11723001	11723400	+	0	NA	intron (NR_136674, intron 3 of 8)	AluSz|SINE|Alu	19657	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
223055	chr8	143380551	143380930	+	0	NA	exon (NM_052924, exon 11 of 15)	exon (NM_052924, exon 11 of 15)	11864	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
50998	chr12	49645951	49646300	+	0	NA	intron (NM_175736, intron 25 of 25)	intron (NM_175736, intron 25 of 25)	22564	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
85891	chr16	57059301	57059750	+	0	NA	non-coding (NR_169515, exon 29 of 48)	non-coding (NR_169515, exon 29 of 48)	-33058	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
191569	chr6	11975501	11975980	+	0	NA	Intergenic	Intergenic	25504	NR_125853	101928253		NR_125853	ENSG00000225102	LOC101928253	-	uncharacterized LOC101928253	ncRNA
148040	chr20	63217701	63218230	+	0	NA	Intergenic	Intergenic	-1834	NM_017798	54915		NM_017798	ENSG00000149658	YTHDF1	C20orf21|DF1	YTH N6-methyladenosine RNA binding protein F1	protein-coding
85405	chr16	50308121	50308650	+	0	NA	exon (NM_001286057, exon 16 of 19)	exon (NM_001286057, exon 16 of 19)	15769	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
74235	chr15	56735471	56735830	+	0	NA	Intergenic	LTR54|LTR|ERV1	-1564	NM_001002843	54816		NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
213335	chr7	135373471	135373630	+	0	NA	intron (NM_001190850, intron 10 of 11)	intron (NM_001190850, intron 10 of 11)	136552	NM_001190849	4850		NM_013316	ENSG00000080802	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex subunit 4	protein-coding
161789	chr3	45101171	45101330	+	0	NA	intron (NM_022842, intron 4 of 8)	intron (NM_022842, intron 4 of 8)	45128	NM_022842	64866		NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
111256	chr19	3531771	3532330	+	0	NA	exon (NM_001136197, exon 7 of 11)	exon (NM_001136197, exon 7 of 11)	-7107	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
88376	chr16	84600511	84602300	+	0	NA	intron (NM_021149, intron 2 of 3)	L2c|LINE|L2	16673	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
4594	chr1	22079971	22080330	+	0	NA	intron (NM_044472, intron 2 of 5)	MIR3|SINE|MIR	27441	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
229808	chr9	125558471	125558700	+	0	NA	intron (NM_024117, intron 6 of 10)	intron (NM_024117, intron 6 of 10)	148623	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
184520	chr5	101047201	101047450	+	0	NA	Intergenic	MER51E|LTR|ERV1	-144043	NM_175052	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
22990	chr1	226103901	226104100	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	20425	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
83762	chr16	28713051	28713150	+	0	NA	intron (NM_001286478, intron 2 of 20)	FLAM_A|SINE|Alu	1636	NM_003752	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
180879	chr5	33849921	33850380	+	0	NA	intron (NM_030955, intron 2 of 23)	intron (NM_030955, intron 2 of 23)	41840	NM_001324511	81792		NM_030955	ENSG00000151388	ADAMTS12	PRO4389	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein-coding
38984	chr11	47587871	47588580	+	0	NA	exon (NM_001367968, exon 3 of 3)	exon (NM_001367968, exon 3 of 3)	1547	NM_001164379	399888		NM_001164379	ENSG00000196666	FAM180B	-	family with sequence similarity 180 member B	protein-coding
40209	chr11	63490721	63491480	+	0	NA	promoter-TSS (NM_001146729)	promoter-TSS (NM_001146729)	67	NM_054108	117245		NM_054108	ENSG00000168004	PLAAT5	HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT	phospholipase A and acyltransferase 5	protein-coding
154720	chr22	36449671	36450250	+	0	NA	Intergenic	Intergenic	31680	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
147847	chr20	62801101	62801580	+	0	NA	non-coding (NR_136405, exon 5 of 5)	non-coding (NR_136405, exon 5 of 5)	-3495	NM_007346	11054		NM_007346	ENSG00000060491	OGFR	-	opioid growth factor receptor	protein-coding
100382	chr17	60138421	60138680	+	0	NA	Intergenic	Intergenic	-11423	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
117362	chr19	19555701	19556100	+	0	NA	Intergenic	AluJo|SINE|Alu	17635	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
224565	chr9	19471701	19472550	+	0	NA	Intergenic	Intergenic	63116	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
171014	chr3	194794521	194794780	+	0	NA	Intergenic	L1MA4A|LINE|L1	-25941	NR_146990	105374293		NR_146990	ENSG00000230401	LINC01972	-	long intergenic non-protein coding RNA 1972	ncRNA
85356	chr16	50245471	50246800	+	0	NA	Intergenic	CpG	-20416	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
196338	chr6	43175701	43176600	+	0	NA	intron (NM_001292001, intron 3 of 6)	intron (NM_001292001, intron 3 of 6)	3754	NM_001292001	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
62890	chr13	110719351	110719650	+	0	NA	exon (NM_001267728, exon 2 of 2)	exon (NM_001267728, exon 2 of 2)	4063	NM_001267728	3621		NM_005537	ENSG00000153487	ING1	p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a	inhibitor of growth family member 1	protein-coding
44870	chr11	114207471	114207630	+	0	NA	intron (NM_001354751, intron 4 of 6)	intron (NM_001354751, intron 4 of 6)	-50256	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
205141	chr7	7176651	7177150	+	0	NA	Intergenic	Intergenic	-5644	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
39169	chr11	57348121	57348450	+	0	NA	intron (NM_002559, intron 5 of 11)	intron (NM_002559, intron 5 of 11)	9933	NM_002559	5024		NM_002559	ENSG00000109991	P2RX3	P2X3	purinergic receptor P2X 3	protein-coding
106226	chr18	11872501	11872730	+	0	NA	intron (NM_182978, intron 10 of 11)	intron (NM_182978, intron 10 of 11)	14862	NM_001261444	2774		NM_002071	ENSG00000141404	GNAL	DYT25|HG1O	G protein subunit alpha L	protein-coding
71944	chr15	23045301	23046180	+	0	NA	Intergenic	Intergenic	-6067	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
234882	chrX	30600551	30601100	+	0	NA	Intergenic	Intergenic	-23059	NM_025159	80231		NM_025159	ENSG00000120280	TASL	CXorf21	TLR adaptor interacting with endolysosomal SLC15A4	protein-coding
77897	chr15	89135921	89136180	+	0	NA	intron (NM_152924, intron 3 of 10)	AluSq2|SINE|Alu	47594	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
43794	chr11	86294271	86294430	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-7890	NM_016401	51501		NM_016401	ENSG00000149196	HIKESHI	C11orf73|HLD13|HSPC138|HSPC179|L7RN6|OPI10	heat shock protein nuclear import factor hikeshi	protein-coding
47596	chr12	4857571	4858430	+	0	NA	Intergenic	Intergenic	48824	NM_002235	3742		NM_002235	ENSG00000151079	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel subfamily A member 6	protein-coding
144721	chr20	36568801	36569230	+	0	NA	intron (NR_109939, intron 2 of 4)	AluJo|SINE|Alu	4260	NR_109939	101926987		NR_109939	ENSG00000232907	DLGAP4-AS1	CCAT7	DLGAP4 antisense RNA 1	ncRNA
17644	chr1	157141001	157141600	+	0	NA	Intergenic	Intergenic	-2709	NM_005240	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
27737	chr10	35129751	35130050	+	0	NA	intron (NM_183060, intron 1 of 5)	intron (NM_183060, intron 1 of 5)	2443	NM_183060	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
49474	chr12	25194421	25195970	+	0	NA	promoter-TSS (NM_001352061)	promoter-TSS (NM_001352061)	-35	NM_001352067	55259		NM_018272	ENSG00000118307	DNAI7	CASC1|CFAP94|LAS1|PPP1R54	dynein axonemal intermediate chain 7	protein-coding
64580	chr14	24697321	24697780	+	0	NA	Intergenic	Intergenic	-63360	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
95024	chr17	32460551	32460850	+	0	NA	intron (NM_001270482, intron 3 of 12)	AluY|SINE|Alu	16190	NM_001270482	5717		NM_002815	ENSG00000108671	PSMD11	Rpn6|S9|p44.5	proteasome 26S subunit, non-ATPase 11	protein-coding
184377	chr5	98770311	98771200	+	0	NA	non-coding (NR_033932, exon 2 of 2)	non-coding (NR_033932, exon 2 of 2)	1319	NM_001012761	285704		NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule BMP co-receptor b	protein-coding
193989	chr6	31768451	31768750	+	0	NA	intron (NM_025258, intron 10 of 16).6	AluSx1|SINE|Alu	-3012	NR_126423	104413891		NR_126423		SAPCD1-AS1	C6orf26-AS1	SAPCD1 antisense RNA 1	ncRNA
178084	chr4	140151511	140152700	+	0	NA	intron (NM_018717, intron 1 of 4)	CpG	2079	NM_018717	55534		NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3	mastermind like transcriptional coactivator 3	protein-coding
62865	chr13	110560471	110560830	+	0	NA	intron (NM_017817, intron 1 of 1)	intron (NM_017817, intron 1 of 1)	1072	NM_017817	55647		NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
224472	chr9	15837101	15837330	+	0	NA	intron (NM_173550, intron 21 of 25)	intron (NM_173550, intron 21 of 25)	273237	NM_001355547	203238		NM_173550	ENSG00000164989	CCDC171	C9orf93|bA536D16.1|bA778P13.1	coiled-coil domain containing 171	protein-coding
216545	chr8	21788871	21789850	+	0	NA	promoter-TSS (NM_001495)	promoter-TSS (NM_001495)	-485	NM_001165038	2675		NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
120364	chr19	43616771	43616930	+	0	NA	intron (NM_182498, intron 1 of 2)	AluSx1|SINE|Alu	2779	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
218356	chr8	43060071	43060230	+	0	NA	intron (NM_002027, intron 2 of 8)	intron (NM_002027, intron 2 of 8)	3827	NM_002027	2339		NM_002027	ENSG00000168522	FNTA	FPTA|PGGT1A|PTAR2	farnesyltransferase, CAAX box, subunit alpha	protein-coding
189557	chr5	174910201	174910480	+	0	NA	Intergenic	Intergenic	85391	NR_046113	441116		NM_001004348	ENSG00000204754	LINC01951	-	long intergenic non-protein coding RNA 1951	ncRNA
131859	chr2	98699021	98699280	+	0	NA	intron (NM_012214, intron 2 of 15)	MER68|LTR|ERVL	31982	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
34755	chr11	187671	188450	+	0	NA	Intergenic	MER57C2|LTR|ERV1	-5018	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
201857	chr6	150395401	150395700	+	0	NA	exon (NM_001164694, exon 5 of 6)	exon (NM_001164694, exon 5 of 6)	26538	NR_134655	389434		NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
105991	chr18	6729571	6729800	+	0	NA	promoter-TSS (NM_001366231)	promoter-TSS (NM_001366231)	-31	NM_001366231	79822		NM_030672	ENSG00000088756	ARHGAP28	-	Rho GTPase activating protein 28	protein-coding
477	chr1	1159551	1159850	+	0	NA	Intergenic	Intergenic	-7404	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
203666	chr7	1000071	1000530	+	0	NA	intron (NR_146966, intron 2 of 2)	CpG	17119	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
228036	chr9	95980571	95980930	+	0	NA	intron (NM_001375291, intron 17 of 18)	A-rich|Low_complexity|Low_complexity	41061	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
150432	chr21	42420851	42421450	+	0	NA	intron (NM_001243467, intron 6 of 11)	intron (NM_001243467, intron 6 of 11)	17248	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
149382	chr21	31078871	31079030	+	0	NA	Intergenic	Intergenic	-40474	NM_001099219	728299		NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
155578	chr22	38743951	38744350	+	0	NA	intron (NM_001199580, intron 9 of 18)	AluSc|SINE|Alu	11316	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
103160	chr17	77424751	77425550	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	20073	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
230930	chr9	129385071	129385650	+	0	NA	Intergenic	Intergenic	48437	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
164031	chr3	53257621	53258300	+	0	NA	Intergenic	Intergenic	-1846	NM_001258028	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
5604	chr1	26045151	26045650	+	0	NA	intron (NM_032513, intron 1 of 6)	intron (NM_032513, intron 1 of 6)	718	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
173632	chr4	13482951	13483050	+	0	NA	intron (NM_001017979, intron 1 of 6)	intron (NM_001017979, intron 1 of 6)	1340	NM_001017979	9364		NM_004249	ENSG00000157869	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
172061	chr4	1023501	1024050	+	0	NA	intron (NM_001370296, intron 4 of 6)	CpG	11311	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
166970	chr3	125518801	125519100	+	0	NA	intron (NM_003794, intron 1 of 13)	AluSz6|SINE|Alu	1252	NR_073435	8723		NM_003794	ENSG00000114520	SNX4	ATG24B	sorting nexin 4	protein-coding
167265	chr3	128607651	128609750	+	0	NA	Intergenic	Intergenic	-32614	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
164304	chr3	57672801	57673000	+	0	NA	intron (NM_152678, intron 1 of 19)	L1MA4|LINE|L1	20177	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
142892	chr20	17958651	17958950	+	0	NA	intron (NM_001282454, intron 1 of 12)	intron (NM_001282454, intron 1 of 12)	4146	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
55300	chr12	103495171	103496370	+	0	NA	promoter-TSS (NR_135004)	promoter-TSS (NR_135004)	198	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
201351	chr6	144630221	144630480	+	0	NA	intron (NM_001375323, intron 1 of 24)	THE1B|LTR|ERVL-MaLR	47202	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
109729	chr19	1087521	1089000	+	0	NA	TTS (NM_001258328)	TTS (NM_001258328)	7115	NM_002695	5434		NM_002695	ENSG00000099817	POLR2E	RPABC1|RPB5|XAP4|hRPB25|hsRPB5	RNA polymerase II, I and III subunit E	protein-coding
99597	chr17	50538171	50538330	+	0	NA	intron (NM_017957, intron 3 of 9)	intron (NM_017957, intron 3 of 9)	504	NR_135675	105371824		NR_135675	ENSG00000250286	LOC105371824	-	uncharacterized LOC105371824	ncRNA
34275	chr10	131903571	131903980	+	0	NA	intron (NR_033191, intron 2 of 9)	intron (NR_033191, intron 2 of 9)	2767	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
212155	chr7	116843351	116843650	+	0	NA	Intergenic	Intergenic	-19087	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
160039	chr3	18434521	18435280	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	3836	NM_001131010	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
113503	chr19	10098021	10098280	+	0	NA	intron (NM_031917, intron 1 of 5)	AluJr4|SINE|Alu	4507	NM_001321411	83854		NM_031917	ENSG00000130812	ANGPTL6	AGF|ARP5	angiopoietin like 6	protein-coding
74313	chr15	58331901	58333030	+	0	NA	Intergenic	Intergenic	-99526	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
98012	chr17	45329501	45330080	+	0	NA	Intergenic	Intergenic	-12770	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
81525	chr16	9088701	9089350	+	0	NA	Intergenic	Charlie14a|DNA|hAT-Charlie	-2619	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
220133	chr8	94824451	94824550	+	0	NA	intron (NM_017864, intron 1 of 26)	MIRb|SINE|MIR	1210	NR_073445	55656		NM_017864	ENSG00000164941	INTS8	C8orf52|INT8|NEDCHS	integrator complex subunit 8	protein-coding
233017	chr9	137016621	137016880	+	0	NA	intron (NM_212533, intron 19 of 48)	intron (NM_212533, intron 19 of 48)	-10714	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
103019	chr17	76982521	76983430	+	0	NA	Intergenic	Intergenic	-13776	NR_136417	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
94905	chr17	31731851	31731950	+	0	NA	Intergenic	LTR12|LTR|ERV1	127062	NM_001330176	55352		NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
72928	chr15	40407851	40407950	+	0	NA	intron (NM_001354599, intron 2 of 11)	intron (NM_001354599, intron 2 of 11)	2105	NM_001159508	3712		NM_002225	ENSG00000128928	IVD	ACAD2|IVDH	isovaleryl-CoA dehydrogenase	protein-coding
154173	chr22	31306271	31307630	+	0	NA	Intergenic	L1MC3|LINE|L1	-14416	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
236079	chrX	56764321	56764880	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-27016	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
56192	chr12	111442421	111442950	+	0	NA	intron (NM_001291424, intron 1 of 6)	intron (NM_001291424, intron 1 of 6)	7823	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
106077	chr18	9120651	9121280	+	0	NA	TTS (NR_110771)	TTS (NR_110771)	15755	NR_110771	101927275		NR_110771	ENSG00000266053	NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
146255	chr20	48921111	48922830	+	0	NA	exon (NM_006420, exon 1 of 39)	exon (NM_006420, exon 1 of 39)	259	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
121530	chr19	47231001	47231930	+	0	NA	promoter-TSS (NM_014417)	promoter-TSS (NM_014417)	-266	NM_014417	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
39678	chr11	61699451	61700080	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	19374	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
42437	chr11	69295851	69296300	+	0	NA	exon (NM_001300924, exon 2 of 2)	exon (NM_001300924, exon 2 of 2)	1920	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
126722	chr2	30183871	30184680	+	0	NA	Intergenic	MLT2C2|LTR|ERVL	-3159	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
2062	chr1	7918101	7918300	+	0	NA	3' UTR (NM_001561, exon 8 of 8)	3' UTR (NM_001561, exon 8 of 8)	22639	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
192285	chr6	20468251	20468350	+	0	NA	intron (NM_001243076, intron 1 of 6)	MER21B|LTR|ERVL	64621	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
155986	chr22	39916551	39916800	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	-9929	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
36656	chr11	8018811	8020280	+	0	NA	Intergenic	CpG	-3036	NR_125366	103581031		NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility 23	ncRNA
173555	chr4	10089251	10089830	+	0	NA	intron (NM_005112, intron 2 of 11)	intron (NM_005112, intron 2 of 11)	-10848	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
203912	chr7	1506221	1506700	+	0	NA	Intergenic	Intergenic	-2071	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
224	chr1	841851	842900	+	0	NA	non-coding (NR_047526, exon 3 of 3)	non-coding (NR_047526, exon 3 of 3)	14577	NR_047525	643837		NR_015368	ENSG00000228794	LINC01128	-	long intergenic non-protein coding RNA 1128	ncRNA
140729	chr2	234446301	234448050	+	0	NA	intron (NR_146988, intron 2 of 2)	intron (NR_146988, intron 2 of 2)	7420	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
147341	chr20	58227921	58229130	+	0	NA	exon (NM_001304369, exon 1 of 4)	exon (NM_001304369, exon 1 of 4)	128	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
57658	chr12	122646751	122647250	+	0	NA	Intergenic	Intergenic	48999	NR_162150	113218511		NR_162150		MIR9902-2	-	microRNA 9902-2	ncRNA
28016	chr10	43200321	43200730	+	0	NA	intron (NM_001282862, intron 5 of 12)	intron (NM_001282862, intron 5 of 12)	29214	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
136972	chr2	190432371	190432980	+	0	NA	intron (NM_017694, intron 2 of 7)	AluSz6|SINE|Alu	23817	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
21345	chr1	204624051	204624300	+	0	NA	intron (NM_201630, intron 1 of 1)	intron (NM_201630, intron 1 of 1)	61563	NM_006338	10446		NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding
90005	chr16	89881521	89882030	+	0	NA	intron (NM_014972, intron 1 of 17)	AluSg|SINE|Alu	8183	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
76911	chr15	78037071	78037300	+	0	NA	intron (NM_144572, intron 3 of 12)	intron (NM_144572, intron 3 of 12)	40467	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
203283	chr6	169805321	169805900	+	0	NA	Intergenic	Intergenic	-6785	NR_026781	401288		NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
42955	chr11	73647151	73648150	+	0	NA	promoter-TSS (NM_001130035)	promoter-TSS (NM_001130035)	-4	NM_001130035	58473		NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding
68304	chr14	77303101	77303300	+	0	NA	intron (NM_013382, intron 4 of 20)	intron (NM_013382, intron 4 of 20)	17683	NM_013382	29954		NM_013382	ENSG00000009830	POMT2	LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2	protein O-mannosyltransferase 2	protein-coding
39367	chr11	59640571	59640930	+	0	NA	intron (NM_152716, intron 16 of 18)	intron (NM_152716, intron 16 of 18)	-24976	NM_002556	5007		NM_002556	ENSG00000110048	OSBP	OSBP1	oxysterol binding protein	protein-coding
151844	chr22	18533801	18534700	+	0	NA	intron (NR_003563, intron 14 of 14)	intron (NR_003563, intron 14 of 14)	6448	NM_001242313	728229		NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
49732	chr12	31403171	31403680	+	0	NA	intron (NM_144973, intron 14 of 20)	AluSx1|SINE|Alu	-34124	NR_146469	101929027		NR_146469	ENSG00000256232	LINC02387	-	long intergenic non-protein coding RNA 2387	ncRNA
229977	chr9	126782851	126782950	+	0	NA	Intergenic	AluY|SINE|Alu	-22106	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
54328	chr12	89648301	89648730	+	0	NA	intron (NM_001366523, intron 2 of 21)	MSTB-int|LTR|ERVL-MaLR	60323	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
184871	chr5	112419921	112420750	+	0	NA	non-coding (NR_027706, exon 1 of 1)	non-coding (NR_027706, exon 1 of 1)	752	NR_027706	54508		NM_019033	ENSG00000278921	EPB41L4A-DT	EPB41L4A-AS2	EPB41L4A divergent transcript	ncRNA
32140	chr10	101284101	101284750	+	0	NA	Intergenic	CpG	-20875	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
133214	chr2	113174811	113175650	+	0	NA	intron (NM_012455, intron 1 of 16)	intron (NM_012455, intron 1 of 16)	1259	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
157875	chr22	49669371	49671580	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-12956	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
206274	chr7	29806401	29806930	+	0	NA	5' UTR (NM_001080529, exon 1 of 9)	5' UTR (NM_001080529, exon 1 of 9)	111	NM_001080529	644150		NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family member 3	protein-coding
52913	chr12	57232471	57233030	+	0	NA	exon (NM_001166359, exon 7 of 12)	exon (NM_001166359, exon 7 of 12)	2384	NR_048562	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
157340	chr22	44665901	44666300	+	0	NA	Intergenic	L1MD1|LINE|L1	-2447	NM_001017529	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
178536	chr4	151015301	151016900	+	0	NA	promoter-TSS (NM_001364905)	promoter-TSS (NM_001364905)	-373	NM_001367550	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
142725	chr20	9978401	9978700	+	0	NA	Intergenic	Intergenic	-7783	NR_109861	101929371		NR_109861		PARAL1	NR_109	PPARG activating RBM14 associated lncRNA 1	ncRNA
197106	chr6	57137351	57137680	+	0	NA	intron (NM_015555, intron 7 of 13)	MER5A1|DNA|hAT-Charlie	34698	NR_110742	101927211		NR_110742		ZNF451-AS1	-	ZNF451 regulatory antisense RNA 1	ncRNA
220716	chr8	101967521	101968580	+	0	NA	intron (NM_001040625, intron 3 of 6)	intron (NM_001040625, intron 3 of 6)	-16382	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
148454	chr20	64010571	64010930	+	0	NA	intron (NM_012469, intron 10 of 20)	intron (NM_012469, intron 10 of 20)	-22977	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
10479	chr1	66350001	66350800	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	-4135	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
50064	chr12	44774821	44775280	+	0	NA	intron (NM_001145108, intron 8 of 19)	intron (NM_001145108, intron 8 of 19)	100611	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
80424	chr16	2632421	2632780	+	0	NA	Intergenic	Intergenic	-6382	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
34622	chr10	133287851	133288550	+	0	NA	exon (NM_001256617, exon 12 of 19)	exon (NM_001256617, exon 12 of 19)	-11332	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
178811	chr4	153520471	153520700	+	0	NA	intron (NM_015196, intron 3 of 34)	Charlie16a|DNA|hAT-Charlie	54225	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
209744	chr7	87195371	87195530	+	0	NA	TTS (NM_024315)	TTS (NM_024315)	24282	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
35564	chr11	1662851	1663150	+	0	NA	Intergenic	Intergenic	-2597	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
18430	chr1	161468001	161468550	+	0	NA	Intergenic	CpG	-37182	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
14261	chr1	143264471	143264950	+	0	NA	Intergenic	(ATCAAATGGA)n|Simple_repeat|Simple_repeat	157882	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
19204	chr1	172429121	172429850	+	0	NA	intron (NM_139240, intron 1 of 6)	intron (NM_139240, intron 1 of 6)	8800	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
233230	chr9	137243301	137246630	+	0	NA	intron (NM_001001710, intron 4 of 6)	intron (NM_001001710, intron 4 of 6)	2786	NM_001001710	401565		NM_001001710	ENSG00000188163	CIMIP2A	FAM166A|HSD46	ciliary microtubule inner protein 2A	protein-coding
122252	chr19	49030721	49031130	+	0	NA	promoter-TSS (NM_001319065)	promoter-TSS (NM_001319065)	862	NR_024244	100170228		NR_024244		SNAR-G2	-	small NF90 (ILF3) associated RNA G2	snRNA
37352	chr11	14908571	14908800	+	0	NA	Intergenic	Intergenic	-16454	NM_024514	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
61488	chr13	52463501	52463700	+	0	NA	intron (NM_001286687, intron 5 of 5)	Tigger4|DNA|TcMar-Tigger	7628	NM_001286686	26586		NM_018204	ENSG00000136108	CKAP2	LB1|TMAP|se20-10	cytoskeleton associated protein 2	protein-coding
234750	chrX	23238771	23239000	+	0	NA	intron (NR_073010, intron 2 of 11)	L1HS|LINE|L1	54261	NR_073010	100873065		NR_046436		PTCHD1-AS	DDX53-AS1|PTCHD1AS1|PTCHD1AS2	PTCHD1 antisense RNA (head to head)	ncRNA
108251	chr18	63227851	63228150	+	0	NA	intron (NM_000633, intron 2 of 2)	MLT1A|LTR|ERVL-MaLR	91769	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
53145	chr12	57878971	57879330	+	0	NA	intron (NR_148947, intron 1 of 3)	intron (NR_148947, intron 1 of 3)	17332	NR_148947	283387		NR_148947	ENSG00000245651	LOC283387	-	uncharacterized LOC283387	ncRNA
171881	chr4	778651	778950	+	0	NA	Intergenic	AluSg|SINE|Alu	3048	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
163802	chr3	52407121	52407400	+	0	NA	exon (NM_004656, exon 7 of 17)	exon (NM_004656, exon 7 of 17)	2748	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
138778	chr2	216018451	216018750	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	-5049	NM_018000	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
72364	chr15	31351221	31351700	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	24625	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
97251	chr17	42996951	42997050	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1273	NM_001349921	6155		NM_000988	ENSG00000131469	RPL27	DBA16|L27|eL27	ribosomal protein L27	protein-coding
208562	chr7	72682821	72683100	+	0	NA	intron (NM_001145440, intron 11 of 13)	L1MC1|LINE|L1	-14943	NR_039793	100616310		NR_039793	ENSG00000266525	MIR4650-1	-	microRNA 4650-1	ncRNA
222561	chr8	140614501	140614700	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	21033	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
174065	chr4	26928051	26928450	+	0	NA	intron (NM_020860, intron 2 of 11)	MLT1A1|LTR|ERVL-MaLR	67409	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
221514	chr8	124637171	124638330	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	90723	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
59901	chr13	30767021	30767530	+	0	NA	Intergenic	MLT1E|LTR|ERVL-MaLR	31732	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
175463	chr4	72531221	72531480	+	0	NA	intron (NM_014243, intron 3 of 21)	L2a|LINE|L2	37871	NM_014243	9508		NM_014243	ENSG00000156140	ADAMTS3	ADAMTS-4|HKLLS3	ADAM metallopeptidase with thrombospondin type 1 motif 3	protein-coding
137443	chr2	196961921	196962380	+	0	NA	Intergenic	Intergenic	-35443	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
236373	chrX	70970001	70970200	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-39004	NM_032803	84889		NM_032803	ENSG00000165349	SLC7A3	ATRC3|CAT-3|CAT3	solute carrier family 7 member 3	protein-coding
196790	chr6	45707251	45707580	+	0	NA	Intergenic	Intergenic	230182	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
210159	chr7	98266701	98267150	+	0	NA	Intergenic	AluSx|SINE|Alu	-14693	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
162035	chr3	46691651	46691900	+	0	NA	intron (NM_147129, intron 1 of 25)	FLAM_C|SINE|Alu	1904	NM_147129	259173		NM_147129	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
143188	chr20	24739221	24739480	+	0	NA	Intergenic	Intergenic	-209919	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
103313	chr17	77892451	77892850	+	0	NA	Intergenic	L2c|LINE|L2	-8563	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
54964	chr12	96259451	96259900	+	0	NA	intron (NM_001303511, intron 1 of 2)	intron (NM_001303511, intron 1 of 2)	4177	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
199593	chr6	119147171	119147580	+	0	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	1818	NM_001288576	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
177231	chr4	108572321	108572860	+	0	NA	intron (NR_026968, intron 1 of 3)	AluSx1|SINE|Alu	15357	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
129238	chr2	68320301	68320530	+	0	NA	promoter-TSS (NM_015463)	promoter-TSS (NM_015463)	-466	NM_001371605	25927		NM_015463	ENSG00000119865	CNRIP1	C2orf32|CRIP-1|CRIP1	cannabinoid receptor interacting protein 1	protein-coding
59372	chr13	24708051	24708400	+	0	NA	intron (NM_001185085, intron 17 of 22)	intron (NM_001185085, intron 17 of 22)	27814	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
160333	chr3	27680451	27680550	+	0	NA	Intergenic	AluJr|SINE|Alu	41823	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
12882	chr1	110216401	110216830	+	0	NA	intron (NM_001377331, intron 1 of 2)	intron (NM_001377331, intron 1 of 2)	6301	NM_001377331	3749		NM_004978	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	potassium voltage-gated channel subfamily C member 4	protein-coding
73505	chr15	43767501	43768080	+	0	NA	intron (NM_005313, intron 8 of 12)	AluSg|SINE|Alu	9176	NM_025165	80237		NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
216321	chr8	12757451	12758230	+	0	NA	Intergenic	Intergenic	-2314	NM_152271	91694		NM_152271	ENSG00000154359	LONRF1	RNF191	LON peptidase N-terminal domain and ring finger 1	protein-coding
128928	chr2	64523871	64526050	+	0	NA	promoter-TSS (NR_136167)	promoter-TSS (NR_136167)	-553	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
58047	chr12	124467571	124467730	+	0	NA	intron (NM_001077261, intron 6 of 47)	intron (NM_001077261, intron 6 of 47)	99962	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
107556	chr18	48804121	48804580	+	0	NA	intron (NM_014772, intron 9 of 11)	intron (NM_014772, intron 9 of 11)	133750	NR_039897	100616366		NR_039897	ENSG00000266276	MIR4743	-	microRNA 4743	ncRNA
201678	chr6	149514901	149515300	+	0	NA	intron (NM_139126, intron 11 of 12)	AluSp|SINE|Alu	-30086	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
208475	chr7	67040801	67041200	+	0	NA	intron (NM_018264, intron 7 of 15)	intron (NM_018264, intron 7 of 15)	44167	NM_018264	55253		NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog	protein-coding
228584	chr9	104891551	104891650	+	0	NA	intron (NM_005502, intron 2 of 49)	AluSx|SINE|Alu	36555	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
233384	chr9	137532471	137533300	+	0	NA	intron (NM_001098537, intron 8 of 34)	intron (NM_001098537, intron 8 of 34)	17517	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
196461	chr6	43516421	43518100	+	0	NA	promoter-TSS (NM_015388)	promoter-TSS (NM_015388)	171	NM_203290	9533		NM_004875	ENSG00000171453	POLR1C	AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3	RNA polymerase I and III subunit C	protein-coding
14592	chr1	145217771	145217930	+	0	NA	Intergenic	L1PA3|LINE|L1	-1798	NR_111955	103091866		NR_111954		LINC01145	-	long intergenic non-protein coding RNA 1145	ncRNA
166699	chr3	120573521	120573650	+	0	NA	Intergenic	L1HS|LINE|L1	-22751	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
145828	chr20	45794071	45794730	+	0	NA	intron (NM_052951, intron 3 of 12)	AluSx1|SINE|Alu	2446	NM_052951	116092		NM_052951	ENSG00000101457	DNTTIP1	C20orf167|Tdif1|dJ447F3.4	deoxynucleotidyltransferase terminal interacting protein 1	protein-coding
190289	chr5	179586471	179586630	+	0	NA	intron (NM_001040452, intron 8 of 17).2	intron (NM_001040452, intron 8 of 17).2	17191	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
95394	chr17	35913471	35913830	+	0	NA	Intergenic	Intergenic	-2627	NR_126038	100533789		NR_126038		LRRC37A8P	-	leucine rich repeat containing 37 member A8, pseudogene	pseudo
180846	chr5	32585311	32586530	+	0	NA	intron (NM_006713, intron 1 of 4)	CpG	363	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
209643	chr7	77788601	77788800	+	0	NA	Intergenic	MIRb|SINE|MIR	9734	NM_032936	85025		NM_032936	ENSG00000135211	TMEM60	C7orf35|DC32	transmembrane protein 60	protein-coding
164004	chr3	53167401	53167600	+	0	NA	intron (NM_001316327, intron 2 of 18)	MIR|SINE|MIR	-1203	NM_001354678	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
178230	chr4	142847111	142847930	+	0	NA	promoter-TSS (NM_003866)	promoter-TSS (NM_003866)	-985	NM_001331040	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
127507	chr2	42291151	42291250	+	0	NA	intron (NM_019063, intron 11 of 22)	L1ME3A|LINE|L1	68838	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
44088	chr11	95703001	95703800	+	0	NA	Intergenic	Intergenic	86382	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
179920	chr5	711971	712130	+	0	NA	non-coding (NR_147096, exon 14 of 14)	non-coding (NR_147096, exon 14 of 14)	-18698	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
161684	chr3	43388071	43388430	+	0	NA	intron (NM_001204831, intron 11 of 12)	intron (NM_001204831, intron 11 of 12)	-36288	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
16245	chr1	153956371	153956900	+	0	NA	intron (NM_181715, intron 1 of 13)	intron (NM_181715, intron 1 of 13)	1977	NM_181715	200186		NM_181715	ENSG00000160741	CRTC2	TORC-2|TORC2	CREB regulated transcription coactivator 2	protein-coding
62042	chr13	90208051	90208190	+	0	NA	Intergenic	AluYa5|SINE|Alu	-23062	NR_030754	693207		NR_030754	ENSG00000283783	MIR622	MIRN622|hsa-mir-622	microRNA 622	ncRNA
88977	chr16	87870501	87870830	+	0	NA	Intergenic	Intergenic	-1158	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
172361	chr4	1741871	1742430	+	0	NA	intron (NM_006342, intron 13 of 15)	intron (NM_006342, intron 13 of 15)	20629	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
3284	chr1	15261321	15261580	+	0	NA	intron (NM_052929, intron 2 of 30)	intron (NM_052929, intron 2 of 30)	14225	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
165890	chr3	106211371	106211930	+	0	NA	Intergenic	Intergenic	-342249	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
164331	chr3	57836771	57837130	+	0	NA	intron (NR_165328, intron 3 of 22)	intron (NR_165328, intron 3 of 22)	-52964	NM_001311178	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
168614	chr3	149568871	149569130	+	0	NA	intron (NM_001348362, intron 6 of 9)	AluYj4|SINE|Alu	89025	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
62554	chr13	99893901	99894880	+	0	NA	intron (NR_104592, intron 8 of 9)	intron (NR_104592, intron 8 of 9)	62775	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
77951	chr15	89360251	89360450	+	0	NA	Intergenic	CpG	-1229	NR_133001	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
93370	chr17	18243351	18243450	+	0	NA	intron (NM_004140, intron 22 of 22)	AluY|SINE|Alu	15338	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
188892	chr5	159986901	159987590	+	0	NA	Intergenic	CpG	-21855	NM_001282500	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
149082	chr21	15743801	15744000	+	0	NA	intron (NM_001352560, intron 1 of 23)	intron (NM_001352560, intron 1 of 23)	13918	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
233536	chrX	227871	228350	+	0	NA	Intergenic	AluYm1|SINE|Alu	-48246	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228336	chr9	98807401	98808600	+	0	NA	exon (NM_024642, exon 1 of 10)	exon (NM_024642, exon 1 of 10)	330	NM_024642	79695		NM_024642	ENSG00000119514	GALNT12	CRCS1|GalNAc-T12	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding
106871	chr18	24136951	24137550	+	0	NA	Intergenic	Intergenic	-1706	NM_001308231	26256		NM_012189	ENSG00000154040	CABYR	CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2	calcium binding tyrosine phosphorylation regulated	protein-coding
214916	chr7	151473021	151473300	+	0	NA	intron (NM_005614, intron 4 of 7)	MLT1F2|LTR|ERVL-MaLR	-32347	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
218056	chr8	38898151	38898480	+	0	NA	Intergenic	L1MB5|LINE|L1	-3031	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
56618	chr12	118181501	118181800	+	0	NA	intron (NM_001346497, intron 2 of 9)	intron (NM_001346497, intron 2 of 9)	8885	NM_001346497	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
89419	chr16	88889251	88889350	+	0	NA	intron (NM_175931, intron 4 of 10)	G-rich|Low_complexity|Low_complexity	5785	NR_135194	101927793		NR_135194	ENSG00000259881	LOC101927793	-	uncharacterized LOC101927793	ncRNA
130987	chr2	87707901	87708580	+	0	NA	intron (NR_160651, intron 3 of 14)	L1MD1|LINE|L1	7257	NR_160651	730268		NR_160651	ENSG00000234231	ANAPC1P4	-	ANAPC1 pseudogene 4	pseudo
120064	chr19	42073321	42073980	+	0	NA	intron (NM_001330519, intron 1 of 1)	AluSz6|SINE|Alu	-2516	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
233811	chrX	1468201	1468980	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-14828	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
200989	chr6	139474351	139474600	+	0	NA	intron (NR_033919, intron 1 of 3)	intron (NR_033919, intron 1 of 3)	121	NR_033919	645434		NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA
217969	chr8	38341271	38341630	+	0	NA	intron (NM_017778, intron 2 of 9)	AluSg4|SINE|Alu	40821	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
15659	chr1	150875971	150877830	+	0	NA	promoter-TSS (NM_001286036)	promoter-TSS (NM_001286036)	-301	NM_178427	405		NM_001668	ENSG00000143437	ARNT	ARNT1|HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2	aryl hydrocarbon receptor nuclear translocator	protein-coding
11651	chr1	91801051	91801350	+	0	NA	intron (NR_036634, intron 2 of 17)	MIRb|SINE|MIR	84951	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
178384	chr4	146655001	146655200	+	0	NA	Intergenic	CpG	16207	NM_004575	5458		NM_004575	ENSG00000151615	POU4F2	BRN3.2|BRN3B|Brn-3b	POU class 4 homeobox 2	protein-coding
40988	chr11	65390201	65390430	+	0	NA	intron (NM_001300833, intron 3 of 9)	intron (NM_001300833, intron 3 of 9)	3678	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
184077	chr5	93581121	93581980	+	0	NA	promoter-TSS (NR_109818)	promoter-TSS (NR_109818)	-230	NR_021491	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
154146	chr22	31270171	31271150	+	0	NA	intron (NM_005569, intron 11 of 15)	intron (NM_005569, intron 11 of 15)	21828	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
48270	chr12	8687921	8688200	+	0	NA	intron (NM_001352267, intron 1 of 5)	intron (NM_001352267, intron 1 of 5)	6383	NM_001352267	57494		NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding
177810	chr4	123443501	123443800	+	0	NA	Intergenic	Intergenic	44110	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
27707	chr10	33211271	33211630	+	0	NA	intron (NM_001244973, intron 9 of 16)	intron (NM_001244973, intron 9 of 16)	-94643	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
163155	chr3	50158151	50158680	+	0	NA	promoter-TSS (NM_001318800)	promoter-TSS (NM_001318800)	-604	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
37616	chr11	20161801	20162000	+	0	NA	Intergenic	Intergenic	-1425	NM_001029865	120237		NM_001029865	ENSG00000109851	DBX1	HLX1	developing brain homeobox 1	protein-coding
191563	chr6	11732071	11732430	+	0	NA	intron (NM_032744, intron 4 of 5)	intron (NM_032744, intron 4 of 5)	46553	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
159202	chr3	12882601	12882800	+	0	NA	intron (NR_136189, intron 1 of 2)	intron (NR_136189, intron 1 of 2)	2511	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
161783	chr3	45035821	45036600	+	0	NA	TTS (NM_003278)	TTS (NM_003278)	6067	NM_001308394	7123		NM_003278	ENSG00000163815	CLEC3B	MCDR4|TN|TNA	C-type lectin domain family 3 member B	protein-coding
190666	chr5	181257121	181257380	+	0	NA	non-coding (NR_109909, exon 3 of 3)	non-coding (NR_109909, exon 3 of 3)	3893	NM_001346048	84851		NM_032765	ENSG00000183718	TRIM52	RNF102	tripartite motif containing 52	protein-coding
33575	chr10	119492601	119492800	+	0	NA	Intergenic	MIRb|SINE|MIR	43833	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
61863	chr13	77016271	77016630	+	0	NA	intron (NM_012158, intron 3 of 4)	intron (NM_012158, intron 3 of 4)	10709	NM_012158	26224		NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A|IDDSFAS	F-box and leucine rich repeat protein 3	protein-coding
220267	chr8	97710701	97710900	+	0	NA	intron (NM_178812, intron 8 of 11)	AluSx|SINE|Alu	-64988	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
23729	chr1	232399051	232399150	+	0	NA	3' UTR (NM_020808, exon 23 of 23)	3' UTR (NM_020808, exon 23 of 23)	231033	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
76623	chr15	75508921	75509430	+	0	NA	intron (NM_002833, intron 5 of 12)	intron (NM_002833, intron 5 of 12)	-53360	NM_001145357	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
196038	chr6	42042151	42042850	+	0	NA	intron (NM_001287434, intron 1 of 4)	AluSp|SINE|Alu	6394	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
107250	chr18	41775371	41775550	+	0	NA	Intergenic	L1HS|LINE|L1	-179774	NM_002647	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
157454	chr22	45250801	45251230	+	0	NA	Intergenic	AluJb|SINE|Alu	-10121	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
100082	chr17	58305451	58306150	+	0	NA	intron (NM_001261835, intron 27 of 31)	intron (NM_001261835, intron 27 of 31)	-19650	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
40239	chr11	63609651	63609950	+	0	NA	intron (NM_007069, intron 1 of 3)	intron (NM_007069, intron 1 of 3)	4637	NM_007069	11145		NM_007069	ENSG00000176485	PLAAT3	AdPLA|FPLD9|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3	phospholipase A and acyltransferase 3	protein-coding
171314	chr3	195968271	195968430	+	0	NA	non-coding (NR_003264, exon 12 of 17)	non-coding (NR_003264, exon 12 of 17)	21929	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
117062	chr19	19020321	19020780	+	0	NA	intron (NR_147914, intron 3 of 11)	AluJb|SINE|Alu	12967	NR_147914	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
52621	chr12	56263801	56264200	+	0	NA	Intergenic	Intergenic	-2942	NM_144576	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
2842	chr1	11241671	11242300	+	0	NA	intron (NM_004958, intron 9 of 57)	intron (NM_004958, intron 9 of 57)	20566	NM_004958	2475		NM_004958	ENSG00000198793	MTOR	FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS	mechanistic target of rapamycin kinase	protein-coding
168713	chr3	150723901	150724300	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	14885	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
73114	chr15	41150721	41151780	+	0	NA	Intergenic	AluSg|SINE|Alu	-34970	NM_017553	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
205428	chr7	16685051	16685450	+	0	NA	intron (NM_001362719, intron 5 of 10)	intron (NM_001362719, intron 5 of 10)	24036	NM_001362719	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
3952	chr1	18636471	18636630	+	0	NA	intron (NM_001135254, intron 4 of 8)	CpG	5704	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
53784	chr12	68829551	68829650	+	0	NA	intron (NM_002392, intron 8 of 10)	AluSx|SINE|Alu	20576	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
57586	chr12	122393771	122394600	+	0	NA	intron (NM_001247997, intron 1 of 25)	intron (NM_001247997, intron 1 of 25)	-1357	NR_045382	100507066		NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
92228	chr17	7889271	7889580	+	0	NA	intron (NM_005852, intron 1 of 38)	intron (NM_005852, intron 1 of 38)	636	NM_005852	1107		NM_001272	ENSG00000170004	CHD3	Mi-2a|Mi2-ALPHA|SNIBCPS|ZFH	chromodomain helicase DNA binding protein 3	protein-coding
74205	chr15	56052671	56053130	+	0	NA	Intergenic	Intergenic	-59288	NM_001329212	4734		NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	NEDD4 E3 ubiquitin protein ligase	protein-coding
20578	chr1	198741201	198741400	+	0	NA	intron (NM_002838, intron 23 of 32)	intron (NM_002838, intron 23 of 32)	102260	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
193212	chr6	29797971	29798300	+	0	NA	TTS (NR_132323)	TTS (NR_132323)	-5062	NR_002139	54435		NM_018985		HCG4	HCG4P10|HCGIV-10|HCGIV.9	HLA complex group 4	ncRNA
213035	chr7	131040321	131041330	+	0	NA	intron (NR_109850, intron 3 of 5)	MIR|SINE|MIR	66205	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
148340	chr20	63803621	63804080	+	0	NA	intron (NM_001369741, intron 1 of 4)	AluJb|SINE|Alu	1653	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
85435	chr16	50382551	50382880	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	12418	NR_146572	105371248		NR_146572	ENSG00000261092	LINC02178	-	long intergenic non-protein coding RNA 2178	ncRNA
238555	chrX	153793851	153795680	+	0	NA	promoter-TSS (NM_006280)	promoter-TSS (NM_006280)	97	NM_006280	6748		NM_006280	ENSG00000180879	SSR4	CDG1Y|TRAPD	signal sequence receptor subunit 4	protein-coding
223355	chr8	143862801	143863200	+	0	NA	exon (NM_031308, exon 2 of 2)	exon (NM_031308, exon 2 of 2)	15467	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
171087	chr3	195487051	195487450	+	0	NA	Intergenic	L1MC1|LINE|L1	-44230	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
28760	chr10	62026921	62027180	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-22307	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
148875	chr21	8443701	8446400	+	0	NA	non-coding (NR_003287, exon 1 of 1).3	non-coding (NR_003287, exon 1 of 1).3	3904	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
236346	chrX	70132701	70134550	+	0	NA	promoter-TSS (NM_001370194)	promoter-TSS (NM_001370194)	178	NM_001370193	3476		NM_001551	ENSG00000089289	IGBP1	ALPHA-4|IBP1|MRXS28|alpha4	immunoglobulin binding protein 1	protein-coding
137476	chr2	197114601	197115380	+	0	NA	intron (NM_153697, intron 8 of 9)	(CACTTTC)n|Simple_repeat|Simple_repeat	-83001	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
121236	chr19	46649301	46650650	+	0	NA	intron (NM_001301046, intron 3 of 3)	intron (NM_001301046, intron 3 of 3)	4743	NM_001301046	147906		NM_145056	ENSG00000197380	DACT3	DAPPER3|RRR1	dishevelled binding antagonist of beta catenin 3	protein-coding
166288	chr3	112517471	112518250	+	0	NA	Intergenic	L1PA10|LINE|L1	-18388	NM_001085357	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
52570	chr12	56165321	56165800	+	0	NA	exon (NM_001330288, exon 27 of 29)	exon (NM_001330288, exon 27 of 29)	7201	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
190698	chr6	195571	196230	+	0	NA	intron (NR_126020, intron 2 of 7)	intron (NR_126020, intron 2 of 7)	9584	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
193983	chr6	31734271	31735900	+	0	NA	intron (NM_001287594, intron 2 of 6).5	intron (NM_001287594, intron 2 of 6).5	1460	NM_001287594	1192		NM_001288	ENSG00000213719	CLIC1	CL1C1|CLCNL1|G6|NCC27	chloride intracellular channel 1	protein-coding
174607	chr4	40274021	40274280	+	0	NA	Intergenic	AluSz|SINE|Alu	-33035	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
209676	chr7	80107251	80107550	+	0	NA	Intergenic	Intergenic	-27431	NM_002069	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
13292	chr1	113069951	113070300	+	0	NA	intron (NR_103777, intron 1 of 2)	SVA_F|Retroposon|SVA	2977	NR_103777	100996251		NR_103777	ENSG00000238198	LRIG2-DT	-	LRIG2 divergent transcript	ncRNA
79608	chr16	1072501	1072900	+	0	NA	promoter-TSS (NM_001172560)	promoter-TSS (NM_001172560)	-56	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
180873	chr5	33440051	33441700	+	0	NA	promoter-TSS (NM_001258438)	promoter-TSS (NM_001258438)	-90	NM_152295	6897		NM_152295	ENSG00000113407	TARS1	TARS|TTD7|ThrRS	threonyl-tRNA synthetase 1	protein-coding
132828	chr2	110576371	110577480	+	0	NA	promoter-TSS (NM_001384364)	promoter-TSS (NM_001384364)	-25	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
109170	chr19	294901	295500	+	0	NA	Intergenic	CpG	-3797	NM_003712	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
78835	chr15	99770551	99770850	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	36227	NR_003260	196968		NM_194295	ENSG00000290767	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	dynamin 1 pseudogene 46	pseudo
45250	chr11	117990921	117991280	+	0	NA	intron (NM_001558, intron 3 of 6)	AluSx|SINE|Alu	4706	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
200548	chr6	136264971	136266000	+	0	NA	intron (NM_001363659, intron 10 of 11)	intron (NM_001363659, intron 10 of 11)	-15174	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
158341	chr22	50453171	50453430	+	0	NA	intron (NM_002972, intron 36 of 40)	L1MEf|LINE|L1	21735	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
125975	chr2	25272701	25274640	+	0	NA	intron (NR_135490, intron 6 of 23)	L2b|LINE|L2	-21355	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
182040	chr5	55800971	55801130	+	0	NA	intron (NM_024415, intron 18 of 21)	LTR37A|LTR|ERV1	34165	NM_001166534	54514		NM_019039	ENSG00000152670	DDX4	VASA	DEAD-box helicase 4	protein-coding
95482	chr17	36209321	36209780	+	0	NA	Intergenic	Intergenic	-1358	NM_207007	388372		NM_207007		CCL4L1	AT744.2|CCL4L|LAG-1|LAG1|MIP-1-beta|SCYA4L|SCYA4L1|SCYA4L2	C-C motif chemokine ligand 4 like 1	protein-coding
196974	chr6	53063951	53064050	+	0	NA	promoter-TSS (NM_033481)	promoter-TSS (NM_033481)	-998	NM_033481	26268		NM_012347	ENSG00000112146	FBXO9	FBX9|NY-REN-57|VCIA1|dJ341E18.2	F-box protein 9	protein-coding
28795	chr10	62098401	62099200	+	0	NA	Intergenic	Intergenic	49443	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
63466	chr13	114139671	114140600	+	0	NA	Intergenic	Intergenic	-7512	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
21963	chr1	208244001	208244860	+	0	NA	promoter-TSS (NM_025179)	promoter-TSS (NM_025179)	-46	NM_025179	5362		NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
174957	chr4	49154371	49155100	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	168093	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
194300	chr6	32772851	32772950	+	0	NA	Intergenic	Intergenic	-9368	NM_001198858	3120		NM_182549	ENSG00000232629	HLA-DQB2	DQB2|HLA-DQB1|HLA-DXB	major histocompatibility complex, class II, DQ beta 2	protein-coding
178017	chr4	139316801	139317000	+	0	NA	intron (NM_057175, intron 1 of 19)	intron (NM_057175, intron 1 of 19)	-14349	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
224131	chr9	4733871	4734230	+	0	NA	intron (NM_001199853, intron 1 of 4)	MLT1B|LTR|ERVL-MaLR	7152	NM_001199852	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
36312	chr11	3857771	3858280	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	1963	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
12277	chr1	100530671	100531480	+	0	NA	Intergenic	Intergenic	-7064	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
96211	chr17	39768501	39768730	+	0	NA	intron (NM_001257413, intron 3 of 3)	MIR|SINE|MIR	9610	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
50157	chr12	45895071	45895230	+	0	NA	intron (NM_152641, intron 20 of 20)	L2c|LINE|L2	95424	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
18679	chr1	167262551	167263080	+	0	NA	intron (NM_001365848, intron 2 of 17)	L2c|LINE|L2	41929	NM_002697	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
150171	chr21	39185771	39186230	+	0	NA	3' UTR (NM_018963, exon 42 of 42)	3' UTR (NM_018963, exon 42 of 42)	-2486	NM_203433	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
88624	chr16	85620871	85621500	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	7863	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
135725	chr2	169362321	169362850	+	0	NA	promoter-TSS (NM_004525)	promoter-TSS (NM_004525)	-51	NM_004525	4036		NM_004525	ENSG00000081479	LRP2	DBS|GP330|LRP-2	LDL receptor related protein 2	protein-coding
126118	chr2	26036871	26037130	+	0	NA	intron (NM_016131, intron 1 of 5)	AluSx1|SINE|Alu	2916	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
85957	chr16	57268201	57268400	+	0	NA	intron (NM_015993, intron 1 of 3)	intron (NM_015993, intron 1 of 3)	16372	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
1969	chr1	6593521	6593780	+	0	NA	exon (NM_014851, exon 4 of 4)	exon (NM_014851, exon 4 of 4)	9219	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
140170	chr2	231628171	231628330	+	0	NA	Intergenic	AluJb|SINE|Alu	35386	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
168136	chr3	138940601	138940830	+	0	NA	intron (NR_121649, intron 2 of 2)	intron (NR_121649, intron 2 of 2)	3305	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
13561	chr1	115828301	115828700	+	0	NA	Intergenic	CpG	12203	NM_001111061	4808		NM_005599	ENSG00000177551	NHLH2	HEN2|HH27|NSCL2|bHLHa34	nescient helix-loop-helix 2	protein-coding
127886	chr2	46144301	46144780	+	0	NA	intron (NM_005400, intron 11 of 14)	intron (NM_005400, intron 11 of 14)	-152867	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
131853	chr2	98691121	98691730	+	0	NA	intron (NM_012214, intron 2 of 15)	AluJr|SINE|Alu	-27952	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
212802	chr7	130273201	130273800	+	0	NA	intron (NM_001869, intron 5 of 10)	intron (NM_001869, intron 5 of 10)	6637	NM_001869	1358		NM_001869	ENSG00000158516	CPA2	-	carboxypeptidase A2	protein-coding
208854	chr7	73708321	73709730	+	0	NA	intron (NM_001165903, intron 2 of 9)	intron (NM_001165903, intron 2 of 9)	-2292	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
10630	chr1	70132951	70133280	+	0	NA	3' UTR (NM_001366839, exon 26 of 26)	3' UTR (NM_001366839, exon 26 of 26)	72464	NM_017768	55631		NM_017768	ENSG00000066557	LRRC40	dJ677H15.1	leucine rich repeat containing 40	protein-coding
202985	chr6	161418471	161418700	+	0	NA	intron (NM_013987, intron 8 of 10)	intron (NM_013987, intron 8 of 10)	-52392	NR_134593	105378098		NR_134593		LOC105378098	-	uncharacterized LOC105378098	ncRNA
25486	chr10	6999271	6999630	+	0	NA	Intergenic	Intergenic	187334	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
36588	chr11	6705601	6706230	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	15964	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
8697	chr1	42157701	42157900	+	0	NA	Intergenic	Intergenic	4390	NM_007102	2981		NM_007102	ENSG00000044012	GUCA2B	GCAP-II|UGN	guanylate cyclase activator 2B	protein-coding
70691	chr14	103108921	103109180	+	0	NA	intron (NM_001077594, intron 10 of 10)	intron (NM_001077594, intron 10 of 10)	8906	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
72059	chr15	28847971	28848130	+	0	NA	intron (NM_001365371, intron 1 of 8)	intron (NM_001365371, intron 1 of 8)	635	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
233084	chr9	137103401	137103600	+	0	NA	intron (NM_016219, intron 8 of 12)	CpG	11233	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
223967	chr9	2010071	2010430	+	0	NA	Intergenic	AluY|SINE|Alu	-5097	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
101732	chr17	69326321	69327700	+	0	NA	intron (NM_172232, intron 1 of 38)	CpG	123	NM_172232	23461		NM_018672	ENSG00000154265	ABCA5	ABC13|EST90625|HTC3	ATP binding cassette subfamily A member 5	protein-coding
68653	chr14	89961071	89961230	+	0	NA	intron (NM_018319, intron 2 of 16)	MER49|LTR|ERV1	5223	NM_001008744	55775		NM_018319	ENSG00000042088	TDP1	-	tyrosyl-DNA phosphodiesterase 1	protein-coding
12757	chr1	109626851	109627780	+	0	NA	exon (NM_001368809, exon 8 of 19)	exon (NM_001368809, exon 8 of 19)	3327	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
179452	chr4	184421741	184422450	+	0	NA	intron (NM_002199, intron 2 of 8)	MSTB|LTR|ERVL-MaLR	-39789	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
39966	chr11	62576971	62577330	+	0	NA	intron (NM_022830, intron 6 of 8)	intron (NM_022830, intron 6 of 8)	-3259	NM_001404	1937		NM_001404	ENSG00000254772	EEF1G	EF1G|GIG35	eukaryotic translation elongation factor 1 gamma	protein-coding
73535	chr15	43824421	43825480	+	0	NA	promoter-TSS (NM_005926)	promoter-TSS (NM_005926)	-260	NM_005926	4236		NM_005926	ENSG00000140259	MFAP1	AMP	microfibril associated protein 1	protein-coding
109723	chr19	1081501	1083380	+	0	NA	intron (NM_012292, intron 19 of 22)	CpG-12984	5806	NM_001282334	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
216021	chr8	9088671	9089090	+	0	NA	intron (NM_001354638, intron 7 of 7)	intron (NM_001354638, intron 7 of 7)	-30250	NR_145772	109616996		NR_145772		SNORD3I	-	small nucleolar RNA, C/D box 3I	snoRNA
106520	chr18	21085751	21086130	+	0	NA	intron (NM_005406, intron 1 of 32)	intron (NM_005406, intron 1 of 32)	25873	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
220139	chr8	94863151	94863450	+	0	NA	intron (NM_017864, intron 16 of 26)	intron (NM_017864, intron 16 of 26)	31954	NM_057749	9134		NM_004702	ENSG00000175305	CCNE2	CYCE2	cyclin E2	protein-coding
113509	chr19	10104171	10105400	+	0	NA	Intergenic	Intergenic	-1438	NM_001346141	56342		NM_020230	ENSG00000130810	PPAN	BXDC3|SSF|SSF-1|SSF1|SSF2	peter pan homolog	protein-coding
160033	chr3	18428871	18429630	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	-3911	NM_001195470	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
119258	chr19	39506271	39506430	+	0	NA	intron (NM_016941, intron 6 of 7)	AluSg7|SINE|Alu	7403	NM_203486	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
46182	chr11	123301471	123302230	+	0	NA	Intergenic	CpG	-56572	NM_001367419	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
221806	chr8	127987401	127988500	+	0	NA	intron (NR_003367, intron 4 of 8)	intron (NR_003367, intron 4 of 8)	-20948	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
91244	chr17	3954001	3954200	+	0	NA	intron (NM_174953, intron 1 of 22)	intron (NM_174953, intron 1 of 22)	10337	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
177204	chr4	108360621	108361330	+	0	NA	Intergenic	Intergenic	188855	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
103013	chr17	76872151	76873080	+	0	NA	promoter-TSS (NM_198955)	promoter-TSS (NM_198955)	-32	NM_198955	146664		NM_144677	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B	protein-coding
162335	chr3	47777501	47778130	+	0	NA	intron (NM_003074, intron 1 of 27)	AluSx|SINE|Alu	4078	NM_003074	6599		NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|HYC5|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
50359	chr12	47203071	47203630	+	0	NA	intron (NM_001281429, intron 2 of 2)	L1PA11|LINE|L1	13093	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
140624	chr2	233444701	233444900	+	0	NA	intron (NM_001377259, intron 8 of 27)	intron (NM_001377259, intron 8 of 27)	25588	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
59931	chr13	31146601	31146800	+	0	NA	intron (NM_001286503, intron 10 of 16)	MIR|SINE|MIR	15204	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
60216	chr13	40491121	40491380	+	0	NA	Intergenic	Intergenic	-10244	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
174365	chr4	38857651	38857750	+	0	NA	promoter-TSS (NM_006068)	promoter-TSS (NM_006068)	-883	NM_006068	10333		NM_006068	ENSG00000174130	TLR6	CD286	toll like receptor 6	protein-coding
35855	chr11	2369371	2369730	+	0	NA	intron (NR_108080, intron 1 of 2)	intron (NR_108080, intron 1 of 2)	-6627	NM_001297649	975		NM_004356	ENSG00000110651	CD81	CVID6|S5.7|TAPA1|TSPAN28	CD81 molecule	protein-coding
236073	chrX	56728651	56729400	+	0	NA	promoter-TSS (NM_001348129)	promoter-TSS (NM_001348129)	-218	NM_001348129	550643		NM_001348129	ENSG00000204272	NBDY	LINC01420|NoBody	negative regulator of P-body association	protein-coding
154179	chr22	31328571	31328730	+	0	NA	intron (NM_032050, intron 3 of 3)	intron (NM_032050, intron 3 of 3)	-6699	NR_110542	101929760		NR_110542	ENSG00000228839	PIK3IP1-DT	PIK3IP1-AS1	PIK3IP1 divergent transcript	ncRNA
238632	chrX	153963771	153964550	+	0	NA	exon (NM_005334, exon 3 of 26)	exon (NM_005334, exon 3 of 26)	-4605	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
237424	chrX	119646251	119647000	+	0	NA	TTS (NR_030413)	TTS (NR_030413)	223	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
120408	chr19	43780821	43781680	+	0	NA	promoter-TSS (NM_002250)	promoter-TSS (NM_002250)	-277	NM_002250	3783		NM_002250	ENSG00000104783	KCNN4	DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium calcium-activated channel subfamily N member 4	protein-coding
182454	chr5	62319951	62320250	+	0	NA	intron (NM_001243952, intron 2 of 20)	L1ME4b|LINE|L1	13894	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
18168	chr1	160797891	160798750	+	0	NA	intron (NM_001033667, intron 1 of 2)	MIRb|SINE|MIR	2146	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
19234	chr1	172629601	172629800	+	0	NA	Intergenic	L2c|LINE|L2	-29308	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
112232	chr19	5712521	5712780	+	0	NA	intron (NR_076392, intron 4 of 18)	AluJo|SINE|Alu	7496	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
51727	chr12	53216921	53218280	+	0	NA	intron (NM_001243730, intron 2 of 8)	intron (NM_001243730, intron 2 of 8)	2762	NM_001042728	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
18400	chr1	161416851	161417150	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-49124	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
188725	chr5	157389721	157390880	+	0	NA	intron (NM_014376, intron 29 of 30)	intron (NM_014376, intron 29 of 30)	-44623	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
140723	chr2	234436451	234436750	+	0	NA	Intergenic	Intergenic	17995	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
19452	chr1	174841721	174842280	+	0	NA	intron (NM_001366447, intron 19 of 20)	intron (NM_001366447, intron 19 of 20)	-32386	NM_001243763	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
85612	chr16	53823071	53823830	+	0	NA	intron (NM_001363905, intron 3 of 9)	L2b|LINE|L2	119294	NM_001080432	79068		NM_001080432	ENSG00000140718	FTO	ALKBH9|BMIQ14|GDFD|IFEX9	FTO alpha-ketoglutarate dependent dioxygenase	protein-coding
45770	chr11	119262051	119263060	+	0	NA	intron (NM_005188, intron 2 of 15)	L1MD3|LINE|L1	50457	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
203289	chr6	169840151	169840450	+	0	NA	Intergenic	(CCCAC)n|Simple_repeat|Simple_repeat	-41475	NR_026781	401288		NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
164468	chr3	59885271	59885430	+	0	NA	intron (NM_001354590, intron 7 of 8)	intron (NM_001354590, intron 7 of 8)	195559	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
133287	chr2	113574571	113574800	+	0	NA	Intergenic	MLT1E1A-int|LTR|ERVL-MaLR	-2697	NR_026821	654412		NR_026821	ENSG00000226516	FAM138B	F379|bA395L14.6	family with sequence similarity 138 member B	ncRNA
172438	chr4	1875821	1876250	+	0	NA	intron (NM_001042424, intron 1 of 21)	AluYm1|SINE|Alu	4642	NM_001042424	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
109624	chr19	980621	981530	+	0	NA	Intergenic	AluJr|SINE|Alu	-1853	NM_001372085	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
89843	chr16	89590621	89591130	+	0	NA	intron (NM_153636, intron 11 of 14)	intron (NM_153636, intron 11 of 14)	15117	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
26427	chr10	17233201	17233680	+	0	NA	intron (NM_003380, intron 3 of 9)	intron (NM_003380, intron 3 of 9)	-3455	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
158847	chr3	9812901	9813680	+	0	NA	exon (NM_001198793, exon 6 of 12)	exon (NM_001198793, exon 6 of 12)	3028	NR_037162	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
18861	chr1	167820121	167820380	+	0	NA	intron (NM_001297772, intron 30 of 32)	CpG	93884	NM_001167749	55811		NM_018417	ENSG00000143199	ADCY10	HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC	adenylate cyclase 10	protein-coding
17467	chr1	156710101	156710850	+	0	NA	Intergenic	Intergenic	-4659	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
25295	chr10	6185321	6185580	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-17482	NM_001363545	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
84791	chr16	31034101	31034780	+	0	NA	5' UTR (NM_001272095, exon 3 of 10)	5' UTR (NM_001272095, exon 3 of 10)	882	NM_004604	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
157040	chr22	42569801	42570200	+	0	NA	intron (NM_014509, intron 9 of 11)	L2c|LINE|L2	12011	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
80082	chr16	1997921	1998380	+	0	NA	3' UTR (NM_178167, exon 14 of 14)	3' UTR (NM_178167, exon 14 of 14)	8180	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
202492	chr6	158297801	158298000	+	0	NA	Intergenic	MER11A|LTR|ERVK	-14565	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
166794	chr3	122562871	122563030	+	0	NA	intron (NM_001146103, intron 1 of 10)	L1ME4b|LINE|L1	1350	NM_001146105	83666		NM_031458	ENSG00000138496	PARP9	ARTD9|BAL|BAL1|MGC:7868	poly(ADP-ribose) polymerase family member 9	protein-coding
228491	chr9	100082571	100082930	+	0	NA	intron (NM_015051, intron 1 of 11)	MER8|DNA|TcMar-Tigger	16250	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
9906	chr1	54402901	54403100	+	0	NA	intron (NM_145716, intron 3 of 17)	intron (NM_145716, intron 3 of 17)	3394	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
94457	chr17	29255371	29255530	+	0	NA	TTS (NM_005208)	TTS (NM_005208)	8591	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
48750	chr12	10771171	10771400	+	0	NA	intron (NR_120463, intron 2 of 6)	intron (NR_120463, intron 2 of 6)	21051	NR_120463	101928162		NR_120463	ENSG00000256888	LINC02366	-	long intergenic non-protein coding RNA 2366	ncRNA
51915	chr12	53682521	53682780	+	0	NA	Intergenic	AluYb8|SINE|Alu	-6320	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
141457	chr2	241054251	241054750	+	0	NA	intron (NM_001080437, intron 16 of 31)	AluJb|SINE|Alu	47787	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
25260	chr10	6074921	6075580	+	0	NA	Intergenic	Intergenic	-12883	NM_001308243	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
214662	chr7	150908851	150911300	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	45729	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
49702	chr12	31066301	31066680	+	0	NA	intron (NR_038927, intron 1 of 2)	intron (NR_038927, intron 1 of 2)	7357	NR_038927	100506660		NR_038927	ENSG00000245614	DDX11-AS1	CONCR|SCAT4	DDX11 antisense RNA 1	ncRNA
22343	chr1	214440801	214441230	+	0	NA	intron (NM_005401, intron 3 of 18)	intron (NM_005401, intron 3 of 18)	110587	NM_005401	5784		NM_005401	ENSG00000152104	PTPN14	CATLPH|PEZ|PTP36|PTPD2	protein tyrosine phosphatase non-receptor type 14	protein-coding
90035	chr16	89904401	89905030	+	0	NA	intron (NM_014972, intron 13 of 17)	intron (NM_014972, intron 13 of 17)	-14147	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
68334	chr14	77598451	77599200	+	0	NA	intron (NM_004863, intron 1 of 11)	AluJb|SINE|Alu	17812	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
135892	chr2	171159001	171159900	+	0	NA	intron (NM_001136554, intron 1 of 20)	intron (NM_001136554, intron 1 of 20)	1443	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
158525	chr3	3172301	3173010	+	0	NA	intron (NM_016302, intron 4 of 10)	intron (NM_016302, intron 4 of 10)	7036	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
41953	chr11	67317001	67318950	+	0	NA	non-coding (NR_024469, exon 1 of 4)	non-coding (NR_024469, exon 1 of 4)	136	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
197611	chr6	82246121	82246380	+	0	NA	intron (NM_015525, intron 1 of 28).2	intron (NM_015525, intron 1 of 28).2	1494	NM_001300906	25998		NM_015525	ENSG00000005700	IBTK	BTBD26|BTKI	inhibitor of Bruton tyrosine kinase	protein-coding
228760	chr9	110207551	110207660	+	0	NA	5' UTR (NM_001012993, exon 1 of 2)	5' UTR (NM_001012993, exon 1 of 2)	554	NM_001012993	401546		NM_001012993	ENSG00000188959	C9orf152	bA470J20.2	chromosome 9 open reading frame 152	protein-coding
147041	chr20	53627571	53627930	+	0	NA	intron (NR_134576, intron 2 of 2)	AluY|SINE|Alu	19396	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
77248	chr15	81305021	81305350	+	0	NA	intron (NM_172217, intron 16 of 18)	intron (NM_172217, intron 16 of 18)	8215	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
164496	chr3	60090471	60090830	+	0	NA	intron (NM_001166243, intron 5 of 9)	intron (NM_001166243, intron 5 of 9)	-9741	NM_001320901	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
172867	chr4	3304471	3304630	+	0	NA	Intergenic	MIRb|SINE|MIR	-9597	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
190912	chr6	2840951	2842230	+	0	NA	intron (NM_030666, intron 1 of 6)	CpG	273	NR_073112	1992		NM_030666	ENSG00000021355	SERPINB1	EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2	serpin family B member 1	protein-coding
221587	chr8	125426201	125426630	+	0	NA	Intergenic	L2b|LINE|L2	-3943	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
84982	chr16	31454971	31455130	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-3254	NM_001288767	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
164837	chr3	71025351	71025850	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	39324	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
190283	chr5	179560971	179561130	+	0	NA	intron (NM_001040452, intron 2 of 17).2	AluSz|SINE|Alu	1319	NM_001040451	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
38875	chr11	47361101	47361300	+	0	NA	intron (NM_003120, intron 2 of 4)	intron (NM_003120, intron 2 of 4)	-8498	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
166693	chr3	120556501	120556930	+	0	NA	Intergenic	L3b|LINE|CR1	-39621	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
204981	chr7	6396121	6396380	+	0	NA	intron (NM_006908, intron 3 of 5)	intron (NM_006908, intron 3 of 5)	21723	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
209649	chr7	77802701	77803500	+	0	NA	intron (NM_001366086, intron 1 of 17)	CR1_Mam|LINE|CR1	4129	NM_001366087	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
122707	chr19	49933951	49934800	+	0	NA	TTS (NM_001290746)	TTS (NM_001290746)	1311	NR_039906	100616483		NR_039906	ENSG00000283842	MIR4751	-	microRNA 4751	ncRNA
139647	chr2	226782121	226782380	+	0	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	17570	NM_005544	3667		NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
42407	chr11	69051121	69051780	+	0	NA	intron (NM_139075, intron 1 of 24)	MIR|SINE|MIR	2518	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
106377	chr18	13290801	13291430	+	0	NA	intron (NM_001378099, intron 2 of 6)	intron (NM_001378099, intron 2 of 6)	13753	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207447	chr7	44573251	44575030	+	0	NA	5' UTR (NM_001257189, exon 1 of 13)	5' UTR (NM_001257189, exon 1 of 13)	398	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
137449	chr2	196983001	196983380	+	0	NA	Intergenic	(AAAATAA)n|Simple_repeat|Simple_repeat	-56483	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
236379	chrX	71095401	71097030	+	0	NA	5' UTR (NM_001170931, exon 1 of 4)	5' UTR (NM_001170931, exon 1 of 4)	364	NM_001170931	4303		NM_005938	ENSG00000184481	FOXO4	AFX|AFX1|MLLT7	forkhead box O4	protein-coding
175469	chr4	73036271	73036630	+	0	NA	Intergenic	Intergenic	33266	NM_173827	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
63280	chr13	113966671	113967180	+	0	NA	intron (NM_001365455, intron 5 of 6)	MIRb|SINE|MIR	7151	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
199599	chr6	119261301	119261500	+	0	NA	intron (NM_005907, intron 5 of 12)	L2a|LINE|L2	88361	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
103319	chr17	77928271	77928430	+	0	NA	Intergenic	Intergenic	-44263	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
228517	chr9	100410051	100410480	+	0	NA	Intergenic	AluY|SINE|Alu	-16878	NM_080655	91283		NM_080655	ENSG00000066697	MSANTD3	C9orf30|L8	Myb/SANT DNA binding domain containing 3	protein-coding
233317	chr9	137425971	137426800	+	0	NA	intron (NM_001256068, intron 2 of 11)	intron (NM_001256068, intron 2 of 11)	2990	NM_001256068	10811		NM_006647	ENSG00000188747	NOXA1	NY-CO-31|SDCCAG31|p51NOX	NADPH oxidase activator 1	protein-coding
210153	chr7	98249121	98249750	+	0	NA	intron (NM_015395, intron 2 of 25)	intron (NM_015395, intron 2 of 25)	2797	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
82523	chr16	18131521	18131950	+	0	NA	Intergenic	Intergenic	200927	NM_001282507	101059938		NM_001282507	ENSG00000214967	NPIPA7	NPIPA8	nuclear pore complex interacting protein family member A7	protein-coding
94935	chr17	32011771	32012330	+	0	NA	intron (NM_001321350, intron 1 of 14)	L1MEf|LINE|L1	4667	NM_001321350	114659		NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
99689	chr17	50779321	50780580	+	0	NA	Intergenic	AluJb|SINE|Alu	11300	NR_107026	102466918		NR_107026	ENSG00000278672	MIR8059	hsa-mir-8059	microRNA 8059	ncRNA
170737	chr3	188189651	188190000	+	0	NA	intron (NM_001375462, intron 1 of 11)	intron (NM_001375462, intron 1 of 11)	11282	NR_024413	401105		NM_207488	ENSG00000279891	FLJ42393	AVPC1948	uncharacterized LOC401105	ncRNA
222135	chr8	132215651	132215750	+	0	NA	intron (NM_004519, intron 1 of 14)	LTR16A2|LTR|ERVL	-110435	NM_001145095	10086		NM_005712	ENSG00000132297	HHLA1	PLA2L	HHLA1 neighbor of OC90	protein-coding
160339	chr3	27716401	27716680	+	0	NA	3' UTR (NM_005442, exon 6 of 6)	3' UTR (NM_005442, exon 6 of 6)	5783	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
226642	chr9	74496671	74497730	+	0	NA	promoter-TSS (NM_006914)	promoter-TSS (NM_006914)	-135	NM_006914	6096		NM_006914	ENSG00000198963	RORB	EIG15|NR1F2|ROR-BETA|RORbeta|RZR-BETA|RZRB|bA133M9.1	RAR related orphan receptor B	protein-coding
65673	chr14	52555101	52555300	+	0	NA	intron (NM_001353361, intron 1 of 7)	intron (NM_001353361, intron 1 of 7)	2364	NM_001353361	283554		NM_001099652	ENSG00000180998	GPR137C	TM7SF1L2	G protein-coupled receptor 137C	protein-coding
49348	chr12	22163571	22163730	+	0	NA	Intergenic	AluSx1|SINE|Alu	117432	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
201051	chr6	142301351	142302250	+	0	NA	promoter-TSS (NM_198569)	promoter-TSS (NM_198569)	-119	NM_020455	57211		NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
117178	chr19	19354271	19354830	+	0	NA	intron (NM_015329, intron 17 of 18)	intron (NM_015329, intron 17 of 18)	-31293	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
55330	chr12	103944221	103945080	+	0	NA	intron (NM_003299, intron 14 of 17)	AluSx1|SINE|Alu	12565	NM_001135570	728568		NM_001135570	ENSG00000204954	UQCC6	BR|BRAWNIN|C12orf73	ubiquinol-cytochrome c reductase complex assembly factor 6	protein-coding
111550	chr19	4040821	4042480	+	0	NA	Intergenic	AluJb|SINE|Alu	23879	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
184226	chr5	96537151	96537980	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-104317	NM_000439	5122		NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC1/3|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
6219	chr1	27492121	27492380	+	0	NA	Intergenic	Intergenic	-2083	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
4417	chr1	21231771	21232730	+	0	NA	intron (NM_001397, intron 14 of 18)	intron (NM_001397, intron 14 of 18)	47365	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
168278	chr3	141489151	141489730	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	2413	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
98829	chr17	48415301	48415780	+	0	NA	intron (NM_001075099, intron 1 of 12)	intron (NM_001075099, intron 1 of 12)	14674	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
191914	chr6	15440321	15440580	+	0	NA	intron (NM_001267040, intron 3 of 17)	intron (NM_001267040, intron 3 of 17)	191595	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
146885	chr20	51512021	51513150	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	30134	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
107207	chr18	36096001	36096350	+	0	NA	Intergenic	L1MB3|LINE|L1	-28581	NM_001303413	55197		NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
72985	chr15	40593621	40595280	+	0	NA	intron (NM_144508, intron 1 of 25)	CpG	201	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
229993	chr9	126862051	126862800	+	0	NA	intron (NM_001099270, intron 1 of 1)	intron (NM_001099270, intron 1 of 1)	1786	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
237209	chrX	108224421	108224500	+	0	NA	intron (NM_033641, intron 3 of 44)	intron (NM_033641, intron 3 of 44)	132682	NM_052936	115201		NM_052936	ENSG00000101844	ATG4A	APG4A|AUTL2|HsAPG4A	autophagy related 4A cysteine peptidase	protein-coding
26846	chr10	24825801	24826780	+	0	NA	Intergenic	Intergenic	-102403	NM_001367447	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
200710	chr6	137492571	137492730	+	0	NA	3' UTR (NM_175747, exon 1 of 1)	3' UTR (NM_175747, exon 1 of 1)	1744	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
81588	chr16	10321671	10322330	+	0	NA	Intergenic	Intergenic	-64061	NM_024997	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
186631	chr5	138548051	138548830	+	0	NA	Intergenic	Intergenic	-5204	NM_001364160	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
132104	chr2	101361401	101361950	+	0	NA	intron (NM_153836, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	25828	NM_153836	200407		NM_153836	ENSG00000175874	CREG2	-	cellular repressor of E1A stimulated genes 2	protein-coding
169942	chr3	179037021	179037850	+	0	NA	intron (NR_164721, intron 2 of 5)	LTR27E|LTR|ERV1	31907	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
198984	chr6	110900071	110900450	+	0	NA	Intergenic	Intergenic	25476	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
81312	chr16	4697551	4698830	+	0	NA	intron (NM_133450, intron 14 of 17)	intron (NM_133450, intron 14 of 17)	4472	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
173089	chr4	6267701	6268100	+	0	NA	Intergenic	L1MEj|LINE|L1	-1950	NM_001145853	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
5351	chr1	25327901	25328430	+	0	NA	intron (NM_001282867, intron 9 of 9)	CR1-3_Croc|LINE|CR1	10089	NM_001321772	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
192855	chr6	27177701	27179850	+	0	NA	Intergenic	AluSx4|SINE|Alu	31149	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
60524	chr13	41411601	41411830	+	0	NA	Intergenic	Intergenic	-30849	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
112066	chr19	5156821	5157280	+	0	NA	Intergenic	AluSq2|SINE|Alu	183762	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
49506	chr12	25342001	25342250	+	0	NA	Intergenic	LTR12|LTR|ERV1	-91196	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
79807	chr16	1407271	1407430	+	0	NA	intron (NM_001372107, intron 2 of 14)	intron (NM_001372107, intron 2 of 14)	7354	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
179627	chr4	186137251	186137630	+	0	NA	intron (NM_001367768, intron 1 of 13)	intron (NM_001367768, intron 1 of 13)	-6847	NM_001006655	25854		NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
96842	chr17	41975971	41976330	+	0	NA	TTS (NR_029431)	TTS (NR_029431)	8353	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
45934	chr11	121194771	121195080	+	0	NA	Intergenic	Intergenic	93682	NM_005422	7007		NM_005422	ENSG00000109927	TECTA	DFNA12|DFNA8|DFNB21	tectorin alpha	protein-coding
84266	chr16	30045071	30046430	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-7340	NM_001365304	112694756		NM_001365304	ENSG00000285043	LOC112694756	ALDA|ALDOA	uncharaterized LOC112694756	protein-coding
70399	chr14	101967521	101968730	+	0	NA	intron (NM_001376, intron 1 of 77)	intron (NM_001376, intron 1 of 77)	3552	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
203853	chr7	1453571	1453930	+	0	NA	intron (NM_182924, intron 1 of 16)	intron (NM_182924, intron 1 of 16)	5720	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
219460	chr8	73166751	73167660	+	0	NA	Intergenic	Intergenic	-74033	NM_153225	157869		NM_153225	ENSG00000164764	SBSPON	C8orf84|RPESP	somatomedin B and thrombospondin type 1 domain containing	protein-coding
200567	chr6	136281201	136281950	+	0	NA	intron (NM_001301038, intron 2 of 12)	intron (NM_001301038, intron 2 of 12)	8271	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
130569	chr2	85754471	85755000	+	0	NA	exon (NM_032827, exon 1 of 3)	exon (NM_032827, exon 1 of 3)	744	NM_032827	84913		NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
217587	chr8	29530761	29531000	+	0	NA	Intergenic	LTR39|LTR|ERV1	-180196	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
38020	chr11	35125871	35126030	+	0	NA	Intergenic	Intergenic	12082	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
195758	chr6	40389121	40389580	+	0	NA	Intergenic	Intergenic	11013	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
199320	chr6	112919751	112919930	+	0	NA	Intergenic	L1PA2|LINE|L1	513607	NR_149098	105377957		NR_149098	ENSG00000232316	LINC02518	-	long intergenic non-protein coding RNA 2518	ncRNA
33603	chr10	119537421	119538000	+	0	NA	intron (NM_001005339, intron 1 of 4)	intron (NM_001005339, intron 1 of 4)	-1177	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
121178	chr19	46487671	46488230	+	0	NA	intron (NM_001205281, intron 3 of 3)	intron (NM_001205281, intron 3 of 3)	7917	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
127550	chr2	42342821	42343380	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	16938	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
207004	chr7	38351871	38352230	+	0	NA	intron (NR_040085, intron 3 of 3)	MIRb|SINE|MIR	10473	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
185219	chr5	121961301	121962550	+	0	NA	promoter-TSS (NM_152546)	promoter-TSS (NM_152546)	-50	NM_152546	153443		NM_152546	ENSG00000151304	SRFBP1	BUD22|P49|Rlb1|STRAP|p49/STRAP	serum response factor binding protein 1	protein-coding
95980	chr17	39167051	39167150	+	0	NA	promoter-TSS (NM_001143968)	promoter-TSS (NM_001143968)	-939	NM_001143968	390790		NM_001143968	ENSG00000141748	ARL5C	ARL12	ADP ribosylation factor like GTPase 5C	protein-coding
6179	chr1	27434971	27435130	+	0	NA	intron (NM_006990, intron 1 of 8)	AluSp|SINE|Alu	42428	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
156509	chr22	41342101	41342300	+	0	NA	intron (NM_017590, intron 11 of 22)	intron (NM_017590, intron 11 of 22)	-25133	NM_001145398	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
106093	chr18	9145201	9145630	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	7852	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
154197	chr22	31399021	31400550	+	0	NA	intron (NM_004147, intron 1 of 8)	CpG	181	NM_004147	4733		NM_004147	ENSG00000185721	DRG1	NEDD3|TANALS	developmentally regulated GTP binding protein 1	protein-coding
130680	chr2	86446901	86447100	+	0	NA	intron (NM_001146688, intron 2 of 25)	AluJb|SINE|Alu	5539	NM_001146688	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
114117	chr19	11141701	11142100	+	0	NA	Intergenic	Intergenic	13882	NM_001317033								
219791	chr8	81188251	81189030	+	0	NA	Intergenic	Intergenic	-76572	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
207331	chr7	44052901	44053100	+	0	NA	intron (NM_001362723, intron 4 of 12)	intron (NM_001362723, intron 4 of 12)	1234	NR_106896	102466985		NR_106896	ENSG00000284067	MIR6837	hsa-mir-6837	microRNA 6837	ncRNA
177429	chr4	112517851	112517950	+	0	NA	intron (NR_161159, intron 1 of 3)	intron (NR_161159, intron 1 of 3)	-1720	NM_024019	63973		NM_024019	ENSG00000178403	NEUROG2	Atoh4|Math4A|NGN2|bHLHa8|ngn-2	neurogenin 2	protein-coding
192961	chr6	27838001	27839200	+	0	NA	promoter-TSS (NM_003510)	promoter-TSS (NM_003510)	31	NM_003520	8341		NM_003520	ENSG00000233822	H2BC15	H2B/d|H2BFD|HIST1H2BN	H2B clustered histone 15	protein-coding
230186	chr9	127795401	127795900	+	0	NA	Intergenic	AluY|SINE|Alu	-7208	NM_001288803	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
54385	chr12	89867571	89867730	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-80043	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
50651	chr12	48795601	48796400	+	0	NA	Intergenic	Intergenic	6424	NR_110020	100506125		NR_110019	ENSG00000257660	ADCY6-DT	-	ADCY6 divergent transcript	ncRNA
52099	chr12	54130921	54131180	+	0	NA	intron (NR_026656, intron 1 of 1)	intron (NR_026656, intron 1 of 1)	4979	NR_026656	400043		NR_026656	ENSG00000250742	LINC02381	HMS|lncEPAT	long intergenic non-protein coding RNA 2381	ncRNA
129143	chr2	65433901	65434450	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1576	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
186709	chr5	138871671	138872030	+	0	NA	3' UTR (NM_015564, exon 2 of 2)	3' UTR (NM_015564, exon 2 of 2)	-3380	NM_001324009	1495		NM_001903	ENSG00000044115	CTNNA1	CAP102|MDBS2|MDPT2	catenin alpha 1	protein-coding
101811	chr17	73429401	73429930	+	0	NA	intron (NM_001144952, intron 12 of 44)	intron (NM_001144952, intron 12 of 44)	-84018	NR_135635	101928251		NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA
90258	chr17	888901	889350	+	0	NA	intron (NM_022463, intron 1 of 7)	MIRc|SINE|MIR	-20507	NR_135633	101927727		NR_135633	ENSG00000262003	LOC101927727	-	uncharacterized LOC101927727	ncRNA
129392	chr2	68825701	68825900	+	0	NA	intron (NM_001364820, intron 9 of 9)	intron (NM_001364820, intron 9 of 9)	45597	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
1763	chr1	6025171	6026600	+	0	NA	promoter-TSS (NM_003636)	promoter-TSS (NM_003636)	-448	NM_172130	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
100633	chr17	63619701	63619900	+	0	NA	Intergenic	MER47A|DNA|TcMar-Tigger	-2617	NM_001330431	4215		NM_002401	ENSG00000198909	MAP3K3	MAPKKK3|MEKK3	mitogen-activated protein kinase kinase kinase 3	protein-coding
11157	chr1	86915401	86916300	+	0	NA	intron (NM_001134492, intron 1 of 4)	intron (NM_001134492, intron 1 of 4)	1215	NM_012262	9653		NM_012262	ENSG00000153936	HS2ST1	NFSRA|dJ604K5.2	heparan sulfate 2-O-sulfotransferase 1	protein-coding
154222	chr22	31528271	31528630	+	0	NA	intron (NM_001258326, intron 2 of 30)	intron (NM_001258326, intron 2 of 30)	31914	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
7193	chr1	32275321	32275900	+	0	NA	exon (NM_001330468, exon 6 of 12)	exon (NM_001330468, exon 6 of 12)	1499	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
132565	chr2	106470671	106470930	+	0	NA	Intergenic	Intergenic	-2387	NM_001144013	653489		NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2 like and GRIP domain containing 3	protein-coding
9231	chr1	45748751	45749450	+	0	NA	intron (NM_001145349, intron 1 of 9)	intron (NM_001145349, intron 1 of 9)	1553	NM_005897	3652		NM_005897	ENSG00000197429	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
163613	chr3	51997621	51998080	+	0	NA	Intergenic	L2a|LINE|L2	-1955	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
149734	chr21	34367051	34367650	+	0	NA	intron (NM_172201, intron 1 of 1)	intron (NM_172201, intron 1 of 1)	3344	NM_172201	9992		NM_005136	ENSG00000159197	KCNE2	ATFB4|LQT5|LQT6|MIRP1	potassium voltage-gated channel subfamily E regulatory subunit 2	protein-coding
101536	chr17	67922721	67923180	+	0	NA	exon (NM_004459, exon 16 of 30)	exon (NM_004459, exon 16 of 30)	70656	NM_181656	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
33069	chr10	110883301	110884280	+	0	NA	intron (NM_145341, intron 5 of 12)	intron (NM_145341, intron 5 of 12)	11862	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
39282	chr11	58526751	58527050	+	0	NA	TTS (NM_001143995)	TTS (NM_001143995)	-18600	NM_001005218	219968		NM_001005218	ENSG00000198283	OR5B21	-	olfactory receptor family 5 subfamily B member 21	protein-coding
159185	chr3	12836601	12837200	+	0	NA	intron (NM_001007073, intron 3 of 3)	intron (NM_001007073, intron 3 of 3)	3550	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
217806	chr8	33576171	33576430	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-9172	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
199577	chr6	118934101	118934800	+	0	NA	intron (NR_165494, intron 1 of 8)	intron (NR_165494, intron 1 of 8)	709	NM_001378372	254394		NM_017696	ENSG00000111877	MCM9	C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3	minichromosome maintenance 9 homologous recombination repair factor	protein-coding
220248	chr8	97595621	97596150	+	0	NA	Intergenic	L1M5|LINE|L1	-48299	NM_178812	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
171251	chr3	195849301	195850030	+	0	NA	intron (NR_134939, intron 1 of 1)	LTR16B2|LTR|ERVL	4563	NR_134940	101929697		NR_134939		LINC01983	-	long intergenic non-protein coding RNA 1983	ncRNA
99381	chr17	49967821	49969090	+	0	NA	promoter-TSS (NM_138281)	promoter-TSS (NM_138281)	-735	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
108881	chr18	79397821	79398630	+	0	NA	intron (NM_172388, intron 1 of 8)	CpG-12705	-2049	NM_001278673	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
106399	chr18	13438071	13438700	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-10851	NR_040031	100288122		NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
61425	chr13	51820171	51820330	+	0	NA	intron (NM_001351006, intron 2 of 2)	intron (NM_001351006, intron 2 of 2)	-16087	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
122882	chr19	50509551	50509650	+	0	NA	intron (NM_138334, intron 2 of 4)	intron (NM_138334, intron 2 of 4)	1591	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
56817	chr12	120218801	120219400	+	0	NA	intron (NM_001080855, intron 6 of 11)	intron (NM_001080855, intron 6 of 11)	17809	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
236397	chrX	71128921	71129580	+	0	NA	intron (NM_005120, intron 25 of 44)	intron (NM_005120, intron 25 of 44)	10654	NM_005120	9968		NM_005120	ENSG00000184634	MED12	ARC240|CAGH45|FGS1|HDKR|HOPA|Kto|MED12S|OHDOX|OKS|OPA1|TNRC11|TRAP230	mediator complex subunit 12	protein-coding
61373	chr13	51440301	51440900	+	0	NA	3' UTR (NM_001039938, exon 3 of 3)	3' UTR (NM_001039938, exon 3 of 3)	12436	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
69751	chr14	98984051	98985180	+	0	NA	Intergenic	MIRb|SINE|MIR	273002	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
51630	chr12	52999351	52999450	+	0	NA	Intergenic	AluSp|SINE|Alu	-7056	NM_001300821	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
132472	chr2	105887251	105887750	+	0	NA	intron (NM_001004720, intron 3 of 3)	intron (NM_001004720, intron 3 of 3)	35653	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
53743	chr12	68642671	68643430	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	-15675	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
52127	chr12	54204501	54204700	+	0	NA	Intergenic	Intergenic	-15606	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
163714	chr3	52289171	52289650	+	0	NA	non-coding (NR_046719, exon 1 of 1)	non-coding (NR_046719, exon 1 of 1)	323	NR_046719	100874110		NR_046719		GLYCTK-AS1	-	GLYCTK antisense RNA 1	ncRNA
149633	chr21	33477671	33477930	+	0	NA	intron (NM_006134, intron 1 of 6)	AluSq2|SINE|Alu	2174	NM_006134	757		NM_006134	ENSG00000142188	TMEM50B	C21orf4|HCVP7TP3	transmembrane protein 50B	protein-coding
94610	chr17	29757751	29758250	+	0	NA	intron (NM_033389, intron 2 of 14)	AluJb|SINE|Alu	3432	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
93860	chr17	21021301	21021500	+	0	NA	intron (NM_015276, intron 2 of 12)	intron (NM_015276, intron 2 of 12)	21611	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
32804	chr10	109895801	109896000	+	0	NA	intron (NM_001324131, intron 3 of 20)	L2b|LINE|L2	27346	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
100734	chr17	63907551	63907650	+	0	NA	Intergenic	Intergenic	3658	NM_001321068	1444		NM_001318	ENSG00000204414	CSHL1	CS-5|CSHP1|CSL|GHB4|hCS-L	chorionic somatomammotropin hormone like 1	protein-coding
56034	chr12	110438371	110438530	+	0	NA	intron (NM_001287222, intron 3 of 6)	AluSc5|SINE|Alu	11887	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
174900	chr4	49093571	49093980	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	107133	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
194357	chr6	32951001	32951600	+	0	NA	intron (NM_006120, intron 1 of 4)	intron (NM_006120, intron 1 of 4)	1797	NM_006120	3108		NM_006120	ENSG00000204257	HLA-DMA	D6S222E|DMA|HLADM|RING6	major histocompatibility complex, class II, DM alpha	protein-coding
235464	chrX	46577351	46577650	+	0	NA	intron (NM_019886, intron 1 of 1)	intron (NM_019886, intron 1 of 1)	3735	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
176374	chr4	88593001	88593750	+	0	NA	intron (NM_001375479, intron 1 of 25)	intron (NM_001375479, intron 1 of 25)	895	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
169024	chr3	152466421	152467580	+	0	NA	Intergenic	Intergenic	-126010	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
205872	chr7	25028401	25029270	+	0	NA	Intergenic	Intergenic	-48657	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
3368	chr1	15616751	15618850	+	0	NA	exon (NM_032341, exon 1 of 10)	exon (NM_032341, exon 1 of 10)	342	NM_032341	84301		NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
180091	chr5	1139951	1140880	+	0	NA	Intergenic	Intergenic	-28352	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
66946	chr14	65723271	65723430	+	0	NA	intron (NM_001371536, intron 9 of 11)	intron (NM_001371536, intron 9 of 11)	252248	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
190859	chr6	1848801	1849000	+	0	NA	intron (NM_001253846, intron 7 of 10)	MER20|DNA|hAT-Charlie	238985	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
93895	chr17	21242701	21243200	+	0	NA	3' UTR (NM_152914, exon 3 of 3)	3' UTR (NM_152914, exon 3 of 3)	10460	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
93401	chr17	18332901	18333100	+	0	NA	intron (NM_004169, intron 9 of 11).2	intron (NM_004169, intron 9 of 11).2	7886	NR_106836	102466733		NR_106836	ENSG00000283772	MIR6778	hsa-mir-6778	microRNA 6778	ncRNA
174650	chr4	40722551	40723050	+	0	NA	Intergenic	L2a|LINE|L2	-27155	NM_001330648	79730		NM_024677	ENSG00000179299	NSUN7	-	NOP2/Sun RNA methyltransferase family member 7	protein-coding
173383	chr4	7947621	7948480	+	0	NA	Intergenic	Intergenic	-8124	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
102864	chr17	76503171	76503530	+	0	NA	Intergenic	Intergenic	-1923	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
152018	chr22	19428351	19428930	+	0	NA	intron (NM_003325, intron 1 of 24)	intron (NM_003325, intron 1 of 24)	3093	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
112098	chr19	5571251	5571550	+	0	NA	Intergenic	AluSx|SINE|Alu	-3366	NR_027064								
141622	chr2	241680421	241680880	+	0	NA	intron (NR_135492, intron 2 of 4)	AluSc8|SINE|Alu	6165	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
70029	chr14	100097851	100098500	+	0	NA	intron (NM_016337, intron 3 of 13)	L2c|LINE|L2	11339	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
115944	chr19	16660901	16663000	+	0	NA	intron (NM_024074, intron 1 of 5)	intron (NM_024074, intron 1 of 5)	811	NM_024074	79041		NM_024074	ENSG00000072954	TMEM38A	TRIC-A|TRICA	transmembrane protein 38A	protein-coding
194851	chr6	34465551	34466300	+	0	NA	promoter-TSS (NM_020804)	promoter-TSS (NM_020804)	-151	NM_020804	29993		NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding
117236	chr19	19427371	19427730	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	-7513	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
184099	chr5	93622201	93623850	+	0	NA	intron (NR_028080, intron 8 of 8)	intron (NR_028080, intron 8 of 8)	-2237	NR_031754	100313887		NR_031754	ENSG00000284336	MIR2277	mir-2277	microRNA 2277	ncRNA
10727	chr1	75991521	75991800	+	0	NA	Intergenic	Intergenic	-19664	NR_125939	101927342		NR_125939		LOC101927342	-	uncharacterized LOC101927342	ncRNA
84480	chr16	30479601	30480250	+	0	NA	intron (NM_002209, intron 6 of 30)	AluSq2|SINE|Alu	7183	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
21072	chr1	203304471	203306200	+	0	NA	promoter-TSS (NR_034150)	promoter-TSS (NR_034150)	-10	NR_034151	730227		NR_034150	ENSG00000233791	BTG2-DT	LINC01136	BTG2 divergent transcript	ncRNA
143459	chr20	30812121	30812880	+	0	NA	Intergenic	Intergenic	-409038	NR_045115	140678		NR_045115		MLLT10P1	MLLT10L|bA348I14.3	MLLT10 pseudogene 1	pseudo
210488	chr7	100164901	100165100	+	0	NA	intron (NM_024637, intron 3 of 3)	AluY|SINE|Alu	3617	NM_024637	79690		NM_024637	ENSG00000197093	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
38390	chr11	44864521	44864780	+	0	NA	intron (NM_130783, intron 3 of 9)	intron (NM_130783, intron 3 of 9)	85510	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
77112	chr15	78936201	78936400	+	0	NA	intron (NM_001319137, intron 4 of 12)	AluSx1|SINE|Alu	8746	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
90941	chr17	2623671	2623830	+	0	NA	intron (NM_000430, intron 1 of 10)	AluSx|SINE|Alu	30096	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
57782	chr12	123043301	123044680	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-33262	NR_036187	100422931		NR_036187	ENSG00000265526	MIR4304	-	microRNA 4304	ncRNA
207468	chr7	44614921	44615680	+	0	NA	intron (NM_001363523, intron 1 of 23)	L1MD1|LINE|L1	8673	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
189206	chr5	171433471	171433830	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	14003	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
125641	chr2	19473851	19474400	+	0	NA	Intergenic	Intergenic	-115502	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
139668	chr2	226916671	226916830	+	0	NA	intron (NM_001349069, intron 8 of 8)	intron (NM_001349069, intron 8 of 8)	80696	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
184142	chr5	95081501	95081900	+	0	NA	5' UTR (NM_001002796, exon 1 of 23)	5' UTR (NM_001002796, exon 1 of 23)	166	NM_001002796	79772		NM_024717	ENSG00000175471	MCTP1	-	multiple C2 and transmembrane domain containing 1	protein-coding
196127	chr6	42400721	42401280	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	51051	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
126220	chr2	26967001	26967400	+	0	NA	Intergenic	AluJo|SINE|Alu	-3437	NM_012326	22924		NM_012326	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule associated protein RP/EB family member 3	protein-coding
52329	chr12	54978701	54979150	+	0	NA	intron (NM_001136030, intron 1 of 10)	intron (NM_001136030, intron 1 of 10)	-1862	NR_147064	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
210615	chr7	100440151	100440250	+	0	NA	Intergenic	AluSp|SINE|Alu	-3703	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
158437	chr22	50601851	50602650	+	0	NA	intron (NM_012324, intron 2 of 11)	intron (NM_012324, intron 2 of 11)	1457	NM_012324	23542		NM_012324	ENSG00000008735	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
89884	chr16	89653471	89654630	+	0	NA	intron (NM_002768, intron 1 of 6)	intron (NM_002768, intron 1 of 6)	3658	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
38365	chr11	44611351	44613180	+	0	NA	intron (NM_002231, intron 6 of 9)	MIR|SINE|MIR	46602	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
17294	chr1	156439951	156440400	+	0	NA	Intergenic	Intergenic	-10627	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
172848	chr4	3248601	3248800	+	0	NA	promoter-TSS (NM_001042690)	promoter-TSS (NM_001042690)	-459	NM_001042690	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
132	chr1	508671	509130	+	0	NA	Intergenic	AluJo|SINE|Alu	-13455	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
133051	chr2	112187421	112188780	+	0	NA	3' UTR (NM_001128165, exon 7 of 7)	3' UTR (NM_001128165, exon 7 of 7)	49715	NM_153214	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
98560	chr17	47700601	47702350	+	0	NA	intron (NM_014726, intron 6 of 8)	intron (NM_014726, intron 6 of 8)	6211	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
74929	chr15	63735351	63735650	+	0	NA	intron (NM_003922, intron 12 of 77)	L1PA4|LINE|L1	98448	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
82202	chr16	14982401	14982600	+	0	NA	intron (NM_001324019, intron 1 of 22)	AluSx|SINE|Alu	7474	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
118816	chr19	38544051	38544800	+	0	NA	intron (NM_000540, intron 87 of 105)	intron (NM_000540, intron 87 of 105)	-51922	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
158896	chr3	9931021	9931430	+	0	NA	intron (NM_153460, intron 16 of 18)	intron (NM_153460, intron 16 of 18)	-2609	NM_001374319	78987		NM_015513	ENSG00000163703	CRELD1	AVSD2|CIRRIN|JELANS	cysteine rich with EGF like domains 1	protein-coding
137765	chr2	198322351	198322650	+	0	NA	intron (NR_110267, intron 2 of 2)	intron (NR_110267, intron 2 of 2)	52597	NR_110267	101927619		NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
27219	chr10	28676871	28678170	+	0	NA	promoter-TSS (NM_012342)	promoter-TSS (NM_012342)	-1	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
175745	chr4	77736001	77736450	+	0	NA	intron (NM_144571, intron 8 of 11)	L3|LINE|CR1	82839	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
57991	chr12	124320721	124321630	+	0	NA	Intergenic	Intergenic	16067	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
101317	chr17	66625271	66625530	+	0	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-161672	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
231319	chr9	130110271	130110430	+	0	NA	intron (NM_001287346, intron 14 of 16)	intron (NM_001287346, intron 14 of 16)	33869	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
194965	chr6	35311471	35312250	+	0	NA	intron (NM_022047, intron 3 of 10)	MIR3|SINE|MIR	14042	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
123166	chr19	52224371	52224730	+	0	NA	intron (NR_033500, intron 12 of 13)	intron (NR_033500, intron 12 of 13)	2530	NR_106859	102466984		NR_106859	ENSG00000274380	MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
94041	chr17	27317151	27317730	+	0	NA	Intergenic	AluSq2|SINE|Alu	23326	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
90778	chr17	2068651	2069400	+	0	NA	intron (NM_001282326, intron 3 of 6)	intron (NM_001282326, intron 3 of 6)	12715	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
118531	chr19	36035651	36036150	+	0	NA	intron (NM_001331102, intron 3 of 3)	intron (NM_001331102, intron 3 of 3)	-3027	NM_015526	25999		NM_015526	ENSG00000105270	CLIP3	CLIPR-59|CLIPR59|RSNL1	CAP-Gly domain containing linker protein 3	protein-coding
91076	chr17	3041701	3041900	+	0	NA	Intergenic	Intergenic	21807	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
223660	chr8	144371301	144371530	+	0	NA	intron (NR_134307, intron 1 of 1)	AluSc|SINE|Alu	1456	NR_134307	101928902		NR_134307		LOC101928902	-	uncharacterized LOC101928902	ncRNA
208030	chr7	55743321	55744080	+	0	NA	Intergenic	Intergenic	-39133	NR_003949	360132		NM_182827	ENSG00000291029	FKBP9P1	FKBP9L	FKBP prolyl isomerase 9 pseudogene 1	pseudo
98595	chr17	47743671	47743830	+	0	NA	intron (NM_013351, intron 3 of 5)	AluSg4|SINE|Alu	10514	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
111886	chr19	4662851	4663880	+	0	NA	intron (NM_019107, intron 3 of 5)	intron (NM_019107, intron 3 of 5)	6977	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
69271	chr14	93061601	93062000	+	0	NA	intron (NM_014216, intron 3 of 10).2	L1ME4a|LINE|L1	-5652	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
91283	chr17	4139651	4139950	+	0	NA	intron (NM_015113, intron 1 of 54)	MLT1J|LTR|ERVL-MaLR	3230	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
215194	chr7	155768021	155768600	+	0	NA	intron (NM_053043, intron 16 of 17)	intron (NM_053043, intron 16 of 17)	40853	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
162470	chr3	48514701	48515500	+	0	NA	Intergenic	AluJr|SINE|Alu	-10274	NM_001272066	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
11359	chr1	89626821	89628080	+	0	NA	intron (NR_033981, intron 2 of 2)	intron (NR_033981, intron 2 of 2)	5444	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
15351	chr1	149962101	149962580	+	0	NA	intron (NM_020205, intron 6 of 11)	intron (NM_020205, intron 6 of 11)	-25461	NM_001145862	10903		NM_006697	ENSG00000014914	MTMR11	CRA	myotubularin related protein 11	protein-coding
108387	chr18	69774871	69775030	+	0	NA	intron (NM_152721, intron 7 of 7)	L1MEd|LINE|L1	172923	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
236891	chrX	84187571	84188480	+	0	NA	promoter-TSS (NM_001330512)	promoter-TSS (NM_001330512)	-90	NM_001330512	27330		NM_014496	ENSG00000072133	RPS6KA6	PP90RSK4|RSK-4|RSK4|S6K-alpha-6|p90RSK6	ribosomal protein S6 kinase A6	protein-coding
238389	chrX	150364601	150364900	+	0	NA	intron (NM_001177465, intron 1 of 4)	CpG-30120	1433	NM_001177465	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
223589	chr8	144290621	144292700	+	0	NA	promoter-TSS (NM_015201)	promoter-TSS (NM_015201)	56	NM_005526	3297		NM_005526	ENSG00000185122	HSF1	HSTF1	heat shock transcription factor 1	protein-coding
158868	chr3	9848221	9849200	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-4651	NM_001351737	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
104954	chr17	81958701	81958900	+	0	NA	intron (NM_178493, intron 4 of 10)	intron (NM_178493, intron 4 of 10)	2387	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
18902	chr1	168345951	168346050	+	0	NA	Intergenic	MIRb|SINE|MIR	-29524	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
108014	chr18	58756971	58757130	+	0	NA	Intergenic	Intergenic	-56830	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
15896	chr1	151543821	151544080	+	0	NA	intron (NM_001126337, intron 1 of 11)	(TTCC)n|Simple_repeat|Simple_repeat	-1846	NR_030280	693139		NR_030280	ENSG00000207606	MIR554	MIRN554|hsa-mir-554	microRNA 554	ncRNA
164447	chr3	59450871	59452230	+	0	NA	Intergenic	Intergenic	206947	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
93529	chr17	19033951	19034250	+	0	NA	intron (NM_006613, intron 3 of 4)	AluSz|SINE|Alu	12857	NM_006613	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
59045	chr13	20525221	20526630	+	0	NA	promoter-TSS (NM_001363647)	promoter-TSS (NM_001363647)	-52	NM_001363647	51084		NM_015974	ENSG00000165475	CRYL1	GDH|HEL30|gul3DH|lambda-CRY	crystallin lambda 1	protein-coding
231013	chr9	129567521	129568130	+	0	NA	Intergenic	Intergenic	-41059	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
212787	chr7	130139601	130140000	+	0	NA	Intergenic	Intergenic	-1931	NR_149033	100128325		NR_149033	ENSG00000229196	LINC03008	-	long intergenic non-protein coding RNA 3008	ncRNA
139940	chr2	230814471	230814830	+	0	NA	intron (NM_016289, intron 7 of 8)	MER58A|DNA|hAT-Charlie	-49535	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
111507	chr19	3986101	3987100	+	0	NA	Intergenic	Intergenic	-1137	NM_001961	1938		NM_001961	ENSG00000167658	EEF2	EEF-2|EF-2|EF2|SCA26	eukaryotic translation elongation factor 2	protein-coding
18371	chr1	161315851	161316750	+	0	NA	intron (NM_001035513, intron 1 of 3)	LTR5_Hs|LTR|ERVK	1919	NM_001035511	6391		NM_003001	ENSG00000143252	SDHC	CYB560|CYBL|PGL3|PPGL3|QPS1|SDH3	succinate dehydrogenase complex subunit C	protein-coding
145131	chr20	38816151	38816250	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	10503	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
14015	chr1	120724601	120725230	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	976	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
97507	chr17	43917121	43918250	+	0	NA	non-coding (NR_026770, exon 1 of 1)	non-coding (NR_026770, exon 1 of 1)	477	NR_026770	23591		NM_014318	ENSG00000267496	FAM215A	APR-2|C17orf88|LINC00530	family with sequence similarity 215 member A	ncRNA
123198	chr19	52605971	52606630	+	0	NA	Intergenic	AluSc5|SINE|Alu	9616	NR_023311	7696		NM_003438		ZNF137P	ZNF137|pHZ-30	zinc finger protein 137, pseudogene	pseudo
238083	chrX	136209251	136209600	+	0	NA	exon (NM_001159702, exon 7 of 8)	exon (NM_001159702, exon 7 of 8)	4523	NM_001369331	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
104604	chr17	81410201	81410680	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-9662	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
137839	chr2	200576021	200576380	+	0	NA	intron (NM_001160033, intron 8 of 8)	intron (NM_001160033, intron 8 of 8)	-9814	NM_001159	316		NM_001159	ENSG00000138356	AOX1	AO|AOH1	aldehyde oxidase 1	protein-coding
207837	chr7	50338501	50339150	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	19777	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
34153	chr10	128062351	128063420	+	0	NA	promoter-TSS (NR_136149)	promoter-TSS (NR_136149)	-460	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
5881	chr1	26782451	26783100	+	0	NA	TTS (NM_006015)	TTS (NM_006015)	-4279	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
215929	chr8	8296251	8296550	+	0	NA	Intergenic	Intergenic	67830	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
155130	chr22	37640201	37640700	+	0	NA	intron (NM_018957, intron 1 of 17)	intron (NM_018957, intron 1 of 17)	781	NM_001350055	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
235008	chrX	39877971	39878130	+	0	NA	Intergenic	Intergenic	40489	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
170312	chr3	184344571	184345100	+	0	NA	exon (NM_001171093, exon 6 of 6)	exon (NM_001171093, exon 6 of 6)	6002	NM_001366133	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
221969	chr8	129983051	129983350	+	0	NA	intron (NM_001353269, intron 1 of 10)	AluY|SINE|Alu	25253	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
233732	chrX	1367051	1367950	+	0	NA	intron (NM_001267713, intron 7 of 9).2	CpG	24613	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
101084	chr17	64922721	64923250	+	0	NA	Intergenic	L1MEi|LINE|L1	-3494	NM_001303255	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
234252	chrX	13095601	13095800	+	0	NA	Intergenic	Intergenic	-51080	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
122750	chr19	50105001	50105380	+	0	NA	Intergenic	AluYa5|SINE|Alu	-1115	NR_024224	100169953		NR_024224		SNAR-A7	-	small NF90 (ILF3) associated RNA A7	snRNA
183625	chr5	80227071	80227500	+	0	NA	intron (NM_001174072, intron 1 of 11)	A-rich|Low_complexity|Low_complexity	28763	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
19950	chr1	184842301	184842500	+	0	NA	intron (NM_052966, intron 5 of 13)	MER5A|DNA|hAT-Charlie	-87542	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
70197	chr14	100546101	100546960	+	0	NA	exon (NM_020836, exon 3 of 7)	exon (NM_020836, exon 3 of 7)	1597	NM_001385103	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
167981	chr3	136726271	136726700	+	0	NA	intron (NM_005862, intron 1 of 33)	AluSz6|SINE|Alu	25893	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
134561	chr2	144186821	144187180	+	0	NA	intron (NM_001354351, intron 7 of 15)	intron (NM_001354351, intron 7 of 15)	50339	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
196292	chr6	42998271	42998430	+	0	NA	intron (NM_180976, intron 2 of 15)	AluSg|SINE|Alu	13780	NM_001270476	5528		NM_006245	ENSG00000112640	PPP2R5D	B56D|B56delta|HJS1|MRD35	protein phosphatase 2 regulatory subunit B'delta	protein-coding
65505	chr14	51889851	51890580	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	28356	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
141400	chr2	240849551	240849650	+	0	NA	Intergenic	L1MC5a|LINE|L1	-19224	NM_000030	189		NM_000030	ENSG00000172482	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|Ser-PyrAT|TLH6	alanine--glyoxylate aminotransferase	protein-coding
187018	chr5	139761251	139761750	+	0	NA	Intergenic	Intergenic	-15277	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
160682	chr3	32249401	32249600	+	0	NA	intron (NM_001320308, intron 1 of 2)	L1MB7|LINE|L1	10820	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
201287	chr6	144305871	144306500	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	14448	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
131289	chr2	96104151	96104250	+	0	NA	Intergenic	(CTC)n|Simple_repeat|Simple_repeat	12371	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
184393	chr5	98881351	98881650	+	0	NA	intron (NR_157078, intron 21 of 36)	intron (NR_157078, intron 21 of 36)	-47062	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
207496	chr7	44750351	44750450	+	0	NA	intron (NM_031449, intron 1 of 18)	intron (NM_031449, intron 1 of 18)	1553	NM_031449	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
10915	chr1	83996471	83996850	+	0	NA	intron (NM_001350214, intron 1 of 21)	intron (NM_001350214, intron 1 of 21)	2472	NM_001350214	79739		NM_024686	ENSG00000137941	TTLL7	-	tubulin tyrosine ligase like 7	protein-coding
80553	chr16	2816971	2818030	+	0	NA	intron (NM_144956, intron 2 of 5)	CpG-9135	263	NM_144956	10942		NM_006799	ENSG00000007038	PRSS21	ESP-1|ESP1|TEST1|TESTISIN	serine protease 21	protein-coding
208217	chr7	65233451	65233950	+	0	NA	non-coding (NR_146905, exon 13 of 13)	non-coding (NR_146905, exon 13 of 13)	92670	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
138219	chr2	202750701	202751300	+	0	NA	intron (NM_173511, intron 4 of 7)	intron (NM_173511, intron 4 of 7)	78234	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
239190	chrY	12904371	12906240	+	0	NA	promoter-TSS (NM_001302552)	promoter-TSS (NM_001302552)	-400	NM_001302552	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
3197	chr1	13740121	13740380	+	0	NA	intron (NM_001135610, intron 4 of 7)	intron (NM_001135610, intron 4 of 7)	-9165	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
223948	chr9	1005151	1005250	+	0	NA	Intergenic	Intergenic	28545	NM_021240	58524		NM_021240	ENSG00000064218	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
22384	chr1	218348071	218348230	+	0	NA	intron (NM_003238, intron 1 of 6)	intron (NM_003238, intron 1 of 6)	-2472	NR_046268	728463		NR_046268		TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
139696	chr2	227465951	227466600	+	0	NA	Intergenic	MamRep4096|DNA|hAT-Tip100	-5857	NR_049888	100847081		NR_049888	ENSG00000284092	MIR5703	mir-5703	microRNA 5703	ncRNA
212619	chr7	129259351	129259450	+	0	NA	intron (NM_001130720, intron 1 of 16)	intron (NM_001130720, intron 1 of 16)	34370	NM_001130720	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
9120	chr1	45342251	45342950	+	0	NA	exon (NM_025077, exon 6 of 8)	exon (NM_025077, exon 6 of 8)	-2130	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
115022	chr19	14085551	14086050	+	0	NA	promoter-TSS (NM_001277378)	promoter-TSS (NM_001277378)	-17	NM_001277378	646457		NM_001277378	ENSG00000188032	C19orf67	-	chromosome 19 open reading frame 67	protein-coding
151401	chr21	45987121	45987630	+	0	NA	intron (NM_001848, intron 6 of 34)	CpG-18602	5605	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
104703	chr17	81540171	81540330	+	0	NA	non-coding (NR_033338, exon 9 of 9)	non-coding (NR_033338, exon 9 of 9)	11873	NM_012418	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
121062	chr19	45866251	45866350	+	0	NA	intron (NM_004497, intron 1 of 1)	AluJr|SINE|Alu	1974	NM_004497	3171		NM_004497	ENSG00000170608	FOXA3	FKHH3|HNF3G|TCF3G	forkhead box A3	protein-coding
17743	chr1	158991221	158991480	+	0	NA	Intergenic	Intergenic	-8626	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
46839	chr11	132558321	132558400	+	0	NA	intron (NM_001012393, intron 3 of 7)	(TCTTCC)n|Simple_repeat|Simple_repeat	274058	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript	ncRNA
59232	chr13	23680921	23681000	+	0	NA	Intergenic	Intergenic	101600	NM_001204458	55504		NM_018647	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	TNF receptor superfamily member 19	protein-coding
20074	chr1	186288801	186289400	+	0	NA	Intergenic	Intergenic	-7173	NM_001127709	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
54850	chr12	95428501	95428780	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-45512	NR_133673	10988		NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
102713	chr17	76177871	76178550	+	0	NA	intron (NM_052916, intron 2 of 18)	MER52D|LTR|ERV1	-36965	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
211089	chr7	102489301	102489730	+	0	NA	intron (NM_001277335, intron 16 of 19)	AluSc|SINE|Alu	-10593	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
67249	chr14	68980421	68980780	+	0	NA	intron (NR_073422, intron 2 of 3)	L2c|LINE|L2	918	NR_073422	161159		NR_073422	ENSG00000259062	ACTN1-DT	ACTN1-AS1|C14orf84	ACTN1 divergent transcript	ncRNA
31680	chr10	97447701	97448100	+	0	NA	intron (NR_109895, intron 1 of 8)	AluSp|SINE|Alu	1725	NM_198046	84287		NM_032327	ENSG00000171307	ZDHHC16	APH2|DHHC-16	zinc finger DHHC-type palmitoyltransferase 16	protein-coding
12109	chr1	100041451	100041980	+	0	NA	intron (NM_033055, intron 1 of 11)	AluSz6|SINE|Alu	3620	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
99366	chr17	49909771	49910100	+	0	NA	Intergenic	Intergenic	-59255	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
105924	chr18	3466671	3467280	+	0	NA	intron (NR_110428, intron 1 of 2)	intron (NR_110428, intron 1 of 2)	725	NR_110429	100505592		NR_110428	ENSG00000266835	GAPLINC	LINC01540	gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA	ncRNA
5894	chr1	26802171	26802750	+	0	NA	Intergenic	AluJb|SINE|Alu	14272	NM_001374482	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
214609	chr7	150706501	150706750	+	0	NA	Intergenic	L1PA3|LINE|L1	-9932	NM_001199577	100527949		NM_001199577	ENSG00000281887	GIMAP1-GIMAP5	-	GIMAP1-GIMAP5 readthrough	protein-coding
43693	chr11	85945821	85946280	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	90667	NM_001286159	220047		NM_173556	ENSG00000150676	CCDC83	CT148|HSD9|KP-CoT-23	coiled-coil domain containing 83	protein-coding
208503	chr7	69595901	69596300	+	0	NA	non-coding (NR_108105, exon 2 of 2)	non-coding (NR_108105, exon 2 of 2)	1524	NR_148926	100507468		NR_108105	ENSG00000234215	CT66	-	cancer/testis associated transcript 66	ncRNA
19626	chr1	180101551	180101850	+	0	NA	intron (NM_014810, intron 37 of 37)	MER21A|LTR|ERVL	-53133	NM_001004128	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
146837	chr20	51415571	51415800	+	0	NA	intron (NM_012340, intron 9 of 10)	L1ME4b|LINE|L1	37292	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
163863	chr3	52493651	52493750	+	0	NA	TTS (NM_007184)	TTS (NM_007184)	-1638	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
235222	chrX	41370621	41371230	+	0	NA	Intergenic	L1ME1|LINE|L1	36759	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
197348	chr6	73448151	73448550	+	0	NA	intron (NM_138441, intron 1 of 4)	AluSp|SINE|Alu	3947	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
205588	chr7	21430601	21430830	+	0	NA	exon (NM_001326543, exon 3 of 6)	exon (NM_001326543, exon 3 of 6)	2632	NM_001326543	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
131504	chr2	96541671	96542180	+	0	NA	intron (NM_001319092, intron 1 of 6)	intron (NM_001319092, intron 1 of 6)	4046	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
101661	chr17	68291001	68293180	+	0	NA	promoter-TSS (NM_001352902)	promoter-TSS (NM_001352902)	-45	NM_001352901	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
232784	chr9	136695271	136695600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7978	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
78640	chr15	94263301	94264100	+	0	NA	intron (NR_169532, intron 1 of 23)	Tigger17a|DNA|TcMar-Tigger	32139	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
160557	chr3	30685071	30685230	+	0	NA	intron (NM_001024847, intron 6 of 7)	intron (NM_001024847, intron 6 of 7)	78549	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
9186	chr1	45602571	45603330	+	0	NA	intron (NM_152298, intron 3 of 13)	intron (NM_152298, intron 3 of 13)	18909	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
144693	chr20	36459471	36459630	+	0	NA	intron (NM_001365621, intron 7 of 12)	AluJr|SINE|Alu	-1918	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
59454	chr13	25971071	25971860	+	0	NA	intron (NM_016529, intron 35 of 36)	intron (NM_016529, intron 35 of 36)	80551	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
214959	chr7	151851301	151851900	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-25442	NR_038926	100505483		NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	ncRNA
397	chr1	1056051	1056680	+	0	NA	TTS (NM_001364727)	TTS (NM_001364727)	-3369	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
218019	chr8	38553821	38554280	+	0	NA	Intergenic	Intergenic	-25388	NR_167676	389649		NM_207412	ENSG00000196166	LINC03042	C8orf86	long intergenic non-protein coding RNA 3042	ncRNA
111982	chr19	4878421	4878930	+	0	NA	Intergenic	Intergenic	-11008	NM_001164189	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
101805	chr17	73311801	73312980	+	0	NA	promoter-TSS (NM_012121)	promoter-TSS (NM_012121)	-389	NM_012121	23580		NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein 4	protein-coding
39596	chr11	61299551	61299650	+	0	NA	3' UTR (NM_001923, exon 27 of 27)	3' UTR (NM_001923, exon 27 of 27)	-4284	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
5363	chr1	25360121	25360380	+	0	NA	intron (NM_014313, intron 6 of 6)	AluY|SINE|Alu	21916	NM_014313	23585		NM_014313	ENSG00000183726	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
24974	chr10	3062351	3062850	+	0	NA	intron (NR_160681, intron 1 of 3)	intron (NR_160681, intron 1 of 3)	4333	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
47169	chr12	779301	779950	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSz|SINE|Alu	26702	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
102614	chr17	75963701	75963900	+	0	NA	intron (NM_004035, intron 2 of 13)	L1MC4a|LINE|L1	15366	NM_004035	51		NM_004035	ENSG00000161533	ACOX1	ACOX|AOX|MITCH|PALMCOX|SCOX	acyl-CoA oxidase 1	protein-coding
146496	chr20	49886771	49887880	+	0	NA	intron (NR_048540, intron 11 of 11)	intron (NR_048540, intron 11 of 11)	23466	NR_162136	113219455		NR_162136		MIR12122	-	microRNA 12122	ncRNA
151293	chr21	45527321	45527580	+	0	NA	intron (NM_194255, intron 4 of 5)	intron (NM_194255, intron 4 of 5)	7306	NM_001205207	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
65402	chr14	50803621	50803880	+	0	NA	intron (NM_020921, intron 4 of 30)	intron (NM_020921, intron 4 of 30)	-18047	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
111213	chr19	3484551	3485750	+	0	NA	Intergenic	L2a|LINE|L2	-4625	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
29362	chr10	69629721	69631530	+	0	NA	intron (NM_145306, intron 1 of 3)	intron (NM_145306, intron 1 of 3)	378	NM_145306	219738		NM_145306	ENSG00000171224	FAM241B	C10orf35	family with sequence similarity 241 member B	protein-coding
156766	chr22	41855951	41856450	+	0	NA	intron (NR_103834, intron 1 of 21)	AluJo|SINE|Alu	-21535	NR_157279	112637020		NR_157279		SREBF2-AS1	821D11.7|RP5	SREBF2 antisense RNA 1	ncRNA
37474	chr11	18335071	18335230	+	0	NA	intron (NM_001142307, intron 3 of 15)	L1MC5a|LINE|L1	12583	NM_005316	2965		NM_005316	ENSG00000110768	GTF2H1	BTF2|P62|TFB1|TFIIH	general transcription factor IIH subunit 1	protein-coding
238490	chrX	153539271	153539930	+	0	NA	intron (NM_001001344, intron 1 of 19)	intron (NM_001001344, intron 1 of 19)	3478	NM_021949	492		NM_021949	ENSG00000067842	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase plasma membrane Ca2+ transporting 3	protein-coding
175402	chr4	70841221	70841580	+	0	NA	Intergenic	Intergenic	-1510	NM_002092	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
143325	chr20	25534221	25534480	+	0	NA	intron (NM_001318226, intron 1 of 22)	MER83|LTR|ERV1	51181	NM_025176	22981		NM_025176	ENSG00000101004	NINL	NLP	ninein like	protein-coding
10845	chr1	77957571	77958080	+	0	NA	intron (NR_146539, intron 16 of 22)	AluSx1|SINE|Alu	21247	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
104260	chr17	80761371	80762580	+	0	NA	intron (NM_020761, intron 6 of 33)	intron (NM_020761, intron 6 of 33)	43657	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
238761	chrX	154350711	154352550	+	0	NA	exon (NM_001456, exon 42 of 47)	exon (NM_001456, exon 42 of 47)	23004	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
144794	chr20	36640951	36641480	+	0	NA	intron (NM_175077, intron 2 of 7)	intron (NM_175077, intron 2 of 7)	4981	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
154464	chr22	35542501	35543400	+	0	NA	intron (NM_014310, intron 1 of 2)	intron (NM_014310, intron 1 of 2)	2119	NM_014310	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
73930	chr15	51037021	51037330	+	0	NA	promoter-TSS (NR_146310)	promoter-TSS (NR_146310)	-313	NR_146310	109729174		NR_146310	ENSG00000259240	MIR4713HG	-	MIR4713 host gene	ncRNA
122578	chr19	49684271	49685250	+	0	NA	exon (NM_198318, exon 6 of 10)	exon (NM_198318, exon 6 of 10)	2643	NR_049811	100847074		NR_049811	ENSG00000274306	MIR5088	mir-5088	microRNA 5088	ncRNA
130706	chr2	86675771	86675930	+	0	NA	intron (NM_001198954, intron 2 of 7)	MLT1H|LTR|ERVL-MaLR	-44441	NM_022780	64795		NM_022780	ENSG00000153561	RMND5A	CTLH|GID2|GID2A|RMD5|p44CTLH	required for meiotic nuclear division 5 homolog A	protein-coding
158992	chr3	10304051	10304350	+	0	NA	intron (NM_183352, intron 7 of 8)	intron (NM_183352, intron 7 of 8)	-11253	NM_001302823	51738		NM_016362	ENSG00000157017	GHRL	MTLRP	ghrelin and obestatin prepropeptide	protein-coding
232683	chr9	136520871	136521280	+	0	NA	intron (NM_017617, intron 4 of 33)	intron (NM_017617, intron 4 of 33)	-1449	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
118912	chr19	38723571	38724230	+	0	NA	intron (NM_004924, intron 13 of 20)	intron (NM_004924, intron 13 of 20)	20574	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
114052	chr19	11021771	11021930	+	0	NA	exon (NM_001128849, exon 19 of 36)	exon (NM_001128849, exon 19 of 36)	37726	NM_001128846	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
124332	chr19	58196871	58197230	+	0	NA	intron (NM_133502, intron 4 of 7)	intron (NM_133502, intron 4 of 7)	13989	NM_133502	10782		NM_016324	ENSG00000171606	ZNF274	HFB101|ZF2|ZKSCAN19|ZSCAN51	zinc finger protein 274	protein-coding
186598	chr5	138510001	138510830	+	0	NA	intron (NM_001291974, intron 9 of 10)	intron (NM_001291974, intron 9 of 10)	31296	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
217535	chr8	29264351	29264450	+	0	NA	Intergenic	AluSx|SINE|Alu	-1330	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
96657	chr17	40626401	40627130	+	0	NA	3' UTR (NM_003079, exon 11 of 11)	3' UTR (NM_003079, exon 11 of 11)	21053	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
115208	chr19	14478871	14479030	+	0	NA	intron (NM_202468, intron 6 of 7)	MIR|SINE|MIR	-3596	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
169879	chr3	177378121	177378430	+	0	NA	Intergenic	Intergenic	-63646	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
36084	chr11	2996101	2996630	+	0	NA	Intergenic	Intergenic	-4036	NM_001369375	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
118283	chr19	35283451	35283950	+	0	NA	intron (NM_021175, intron 1 of 2)	L2b|LINE|L2	1172	NM_021175	57817		NM_021175	ENSG00000105697	HAMP	HEPC|HFE2B|LEAP1|PLTR	hepcidin antimicrobial peptide	protein-coding
11217	chr1	88869751	88870200	+	0	NA	intron (NM_001514, intron 2 of 6)	AluY|SINE|Alu	21592	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
44584	chr11	108253271	108253630	+	0	NA	intron (NM_000051, intron 12 of 62)	intron (NM_000051, intron 12 of 62)	29921	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
214731	chr7	151033701	151033900	+	0	NA	exon (NM_001282292, exon 2 of 16)	exon (NM_001282292, exon 2 of 16)	5350	NM_007188	11194		NM_007188	ENSG00000197150	ABCB8	EST328128|M-ABC1|MABC1|MITOSUR	ATP binding cassette subfamily B member 8	protein-coding
159137	chr3	12649451	12649750	+	0	NA	intron (NM_001354691, intron 1 of 16)	(CA)n|Simple_repeat|Simple_repeat	13908	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
69470	chr14	95195251	95195350	+	0	NA	intron (NM_024734, intron 10 of 12)	intron (NM_024734, intron 10 of 12)	-37290	NM_030621	23405		NM_030621	ENSG00000100697	DICER1	DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2|aviD	dicer 1, ribonuclease III	protein-coding
82862	chr16	21526151	21527330	+	0	NA	Intergenic	Intergenic	-6296	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
90118	chr16	90111751	90112050	+	0	NA	intron (NR_126161, intron 3 of 3)	L1MD3|LINE|L1	9636	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
202630	chr6	158751121	158751850	+	0	NA	intron (NM_001318745, intron 9 of 14)	intron (NM_001318745, intron 9 of 14)	13268	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
85736	chr16	56674051	56674580	+	0	NA	Intergenic	MIR|SINE|MIR	-1801	NR_104045	644314		NM_175621		MT1IP	MT1|MT1I|MTE	metallothionein 1I, pseudogene	pseudo
24627	chr1	246579821	246580100	+	0	NA	intron (NM_001139459, intron 1 of 8)	MIRb|SINE|MIR	13504	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
113562	chr19	10253521	10254030	+	0	NA	intron (NM_146387, intron 4 of 9)	AluSz|SINE|Alu	1561	NM_015956	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
102136	chr17	75084051	75084650	+	0	NA	Intergenic	Intergenic	-3415	NM_001271765	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
146468	chr20	49711921	49712180	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	1828	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
131165	chr2	91659901	91660100	+	0	NA	promoter-TSS (NR_027238)	promoter-TSS (NR_027238)	-51	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
63790	chr14	21300621	21301380	+	0	NA	exon (NM_020366, exon 4 of 25)	exon (NM_020366, exon 4 of 25)	-16553	NM_001377950	57096		NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	RPGR interacting protein 1	protein-coding
223204	chr8	143584301	143584850	+	0	NA	intron (NM_001330646, intron 2 of 6)	intron (NM_001330646, intron 2 of 6)	-6245	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
156798	chr22	41916201	41916600	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-1305	NM_001207020	440829		NM_001207020	ENSG00000234965	SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
213251	chr7	134357971	134358430	+	0	NA	Intergenic	MIRb|SINE|MIR	-41270	NM_032826	84912		NM_032826	ENSG00000205060	SLC35B4	YEA|YEA4	solute carrier family 35 member B4	protein-coding
195821	chr6	41271921	41272180	+	0	NA	intron (NR_136332, intron 4 of 4)	intron (NR_136332, intron 4 of 4)	14632	NM_001242590	54210		NM_018643	ENSG00000124731	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
116718	chr19	18450901	18451980	+	0	NA	intron (NM_006532, intron 7 of 11)	intron (NM_006532, intron 7 of 11)	-13307	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
62058	chr13	91406601	91406860	+	0	NA	intron (NM_004466, intron 1 of 7)	LTR55|LTR|ERVL?	8109	NM_004466	2262		NM_004466	ENSG00000179399	GPC5	-	glypican 5	protein-coding
90811	chr17	2258321	2259080	+	0	NA	intron (NM_017575, intron 8 of 18)	AluJo|SINE|Alu	7485	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
193181	chr6	29723901	29724530	+	0	NA	exon (NM_001098478, exon 3 of 6).6	exon (NM_001098478, exon 3 of 6).6	781	NM_001098478	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
94530	chr17	29572301	29573580	+	0	NA	TTS (NM_014030)	TTS (NM_014030)	4239	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
42894	chr11	73367521	73368230	+	0	NA	3' UTR (NM_014786, exon 21 of 21)	3' UTR (NM_014786, exon 21 of 21)	-8524	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
176823	chr4	102556671	102557450	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-54574	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
64874	chr14	35332871	35333430	+	0	NA	Intergenic	Intergenic	40768	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
28496	chr10	50069271	50069430	+	0	NA	intron (NM_001291398, intron 2 of 29)	AluSg|SINE|Alu	1396	NM_001005751	387680		NM_018232	ENSG00000099290	WASHC2A	FAM21A|FAM21B|bA56A21.1|bA98I6.1	WASH complex subunit 2A	protein-coding
27357	chr10	30706871	30707030	+	0	NA	intron (NR_036438, intron 7 of 9)	intron (NR_036438, intron 7 of 9)	14676	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
175174	chr4	55994051	55994350	+	0	NA	intron (NM_025009, intron 15 of 25)	intron (NM_025009, intron 15 of 25)	45255	NM_025009	9662		NM_014645	ENSG00000174799	CEP135	CEP4|KIAA0635|MCPH8	centrosomal protein 135	protein-coding
63765	chr14	21248971	21249130	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	20392	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
186566	chr5	138475951	138477000	+	0	NA	Intergenic	Intergenic	10996	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
177967	chr4	139028651	139029150	+	0	NA	intron (NM_012118, intron 1 of 2)	AluSx1|SINE|Alu	13119	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
135947	chr2	171963271	171963450	+	0	NA	intron (NR_027862, intron 3 of 9)	intron (NR_027862, intron 3 of 9)	-36593	NM_001322279	254042		NM_199227	ENSG00000172878	METAP1D	MAP 1D|MAP1D|MetAP 1D|Metap1l	methionyl aminopeptidase type 1D, mitochondrial	protein-coding
205949	chr7	26105951	26106050	+	0	NA	Intergenic	AluSp|SINE|Alu	-46198	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
113475	chr19	9938671	9939130	+	0	NA	Intergenic	Intergenic	-2385	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
105199	chr17	82315421	82316330	+	0	NA	intron (NM_006137, intron 3 of 3)	intron (NM_006137, intron 3 of 3)	1733	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
235197	chrX	41344221	41344830	+	0	NA	intron (NM_001193417, intron 9 of 15)	AluSp|SINE|Alu	10359	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
77772	chr15	85832371	85832530	+	0	NA	Intergenic	AluJb|SINE|Alu	6815	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
211383	chr7	105011891	105013700	+	0	NA	non-coding (NR_024586, exon 1 of 1)	non-coding (NR_024586, exon 1 of 1)	1346	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
237036	chrX	102900301	102900830	+	0	NA	intron (NR_146589, intron 6 of 11)	intron (NR_146589, intron 6 of 11)	-36707	NM_001031834	282808		NM_001031834	ENSG00000102128	RAB40AL	MRXSMP|RAR2|RLGP	RAB40A like	protein-coding
81043	chr16	4310971	4311300	+	0	NA	Intergenic	AluSg|SINE|Alu	-3626	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
34335	chr10	132179801	132180000	+	0	NA	intron (NM_001105521, intron 24 of 24)	MER68B|LTR|ERVL	-7048	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
51510	chr12	52154851	52155830	+	0	NA	Intergenic	Intergenic	36674	NM_001081492	144501		NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
218313	chr8	42674001	42674280	+	0	NA	Intergenic	Intergenic	-23226	NM_000749	1142		NM_000749	ENSG00000147432	CHRNB3	-	cholinergic receptor nicotinic beta 3 subunit	protein-coding
150973	chr21	44327821	44328230	+	0	NA	TTS (NM_002626)	TTS (NM_002626)	10313	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
105042	chr17	82061451	82061750	+	0	NA	intron (NM_022156, intron 7 of 13)	intron (NM_022156, intron 7 of 13)	4204	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
1751	chr1	6004851	6005580	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	12539	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
84281	chr16	30072601	30073180	+	0	NA	Intergenic	AluSx|SINE|Alu	-3104	NM_001303503	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
25785	chr10	11164071	11165600	+	0	NA	promoter-TSS (NM_001083591)	promoter-TSS (NM_001083591)	-46	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
224933	chr9	33022351	33023180	+	0	NA	intron (NM_001369001, intron 1 of 6)	L1ME3G|LINE|L1	2355	NR_160923	54840		NM_017692	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
98492	chr17	47252871	47253050	+	0	NA	promoter-TSS (NM_000212)	promoter-TSS (NM_000212)	-867	NM_000212	3690		NM_000212	ENSG00000259207	ITGB3	BDPLT16|BDPLT2|BDPLT24|CD61|GP3A|GPIIIa|GT|GT2	integrin subunit beta 3	protein-coding
123007	chr19	51020171	51020580	+	0	NA	promoter-TSS (NM_001077500)	promoter-TSS (NM_001077500)	-200	NM_001077500	5655		NM_002776	ENSG00000129451	KLK10	NES1|PRSSL1	kallikrein related peptidase 10	protein-coding
93200	chr17	17816351	17817050	+	0	NA	exon (NM_001005291, exon 11 of 20)	exon (NM_001005291, exon 11 of 20)	-2769	NR_030361	693120		NR_030361	ENSG00000207839	MIR33B	MIRN33B|hsa-mir-33b|mir-33b	microRNA 33b	ncRNA
117303	chr19	19494171	19495130	+	0	NA	intron (NM_001384516, intron 6 of 12)	intron (NM_001384516, intron 6 of 12)	20898	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
69609	chr14	97490401	97491000	+	0	NA	intron (NR_110166, intron 1 of 4)	intron (NR_110166, intron 1 of 4)	31884	NR_110166	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
155252	chr22	37972101	37972300	+	0	NA	TTS (NM_006941)	TTS (NM_006941)	4637	NR_106878	102465492		NR_106878	ENSG00000284289	MIR6820	hsa-mir-6820	microRNA 6820	ncRNA
169846	chr3	177186571	177186930	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	9728	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
234130	chrX	9885201	9885400	+	0	NA	intron (NM_001649, intron 2 of 9)	intron (NM_001649, intron 2 of 9)	-27072	NM_001320664	357		NM_001649	ENSG00000146950	SHROOM2	APXL|HSAPXL	shroom family member 2	protein-coding
154008	chr22	30425551	30425970	+	0	NA	promoter-TSS (NM_016498)	promoter-TSS (NM_016498)	-8	NM_001003704	51537		NM_016498	ENSG00000242114	MTFP1	HSPC242|MTP18	mitochondrial fission process 1	protein-coding
181322	chr5	40378271	40379400	+	0	NA	Intergenic	Intergenic	-301080	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
216394	chr8	17930251	17930350	+	0	NA	intron (NR_148032, intron 2 of 38)	AluYk3|SINE|Alu	7312	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
56947	chr12	120479421	120479830	+	0	NA	intron (NM_001037494, intron 1 of 2)	L2c|LINE|L2	9783	NM_001037494	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
77252	chr15	81309701	81310330	+	0	NA	non-coding (NR_135013, exon 5 of 5)	non-coding (NR_135013, exon 5 of 5)	13045	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
134636	chr2	144428101	144428300	+	0	NA	intron (NM_014795, intron 3 of 9)	intron (NM_014795, intron 3 of 9)	-91414	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
33970	chr10	124652351	124652500	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-51603	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
151688	chr22	17170951	17172300	+	0	NA	Intergenic	CpG	-6338	NM_017829	27440		NM_017829	ENSG00000069998	HDHD5	CECR5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding
32264	chr10	102055321	102056700	+	0	NA	intron (NM_024541, intron 1 of 25)	CpG	163	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
158485	chr22	50807731	50808400	+	0	NA	Intergenic	(AGGGTT)n|Simple_repeat|Simple_repeat	24336	NR_026982	284942		NM_203302	ENSG00000291064	RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
77434	chr15	84186901	84187100	+	0	NA	Intergenic	Intergenic	-4848	NR_033738	440300		NR_033738		LOC440300	-	chondroitin sulfate proteoglycan 4 pseudogene	pseudo
232298	chr9	134464771	134464930	+	0	NA	Intergenic	CpG	58290	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
189333	chr5	172170151	172171130	+	0	NA	intron (NM_005990, intron 1 of 18)	intron (NM_005990, intron 1 of 18)	17584	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
118698	chr19	38209621	38210000	+	0	NA	Intergenic	CpG	14412	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
158618	chr3	4871921	4872380	+	0	NA	Intergenic	MIR3|SINE|MIR	34351	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
123834	chr19	55224801	55225530	+	0	NA	Intergenic	MSR1|Satellite|Satellite	3598	NM_001372013	255043		NM_173804	ENSG00000180089	TMEM86B	-	transmembrane protein 86B	protein-coding
151415	chr21	46065571	46066130	+	0	NA	Intergenic	Intergenic	-32262	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
80314	chr16	2296871	2297330	+	0	NA	intron (NM_001089, intron 17 of 32)	intron (NM_001089, intron 17 of 32)	22480	NR_039868	100616241		NR_039868	ENSG00000264004	MIR4717	-	microRNA 4717	ncRNA
111495	chr19	3968751	3969350	+	0	NA	intron (NM_001348, intron 2 of 8)	intron (NM_001348, intron 2 of 8)	2049	NM_001348	1613		NM_001348	ENSG00000167657	DAPK3	DLK|ZIP|ZIPK	death associated protein kinase 3	protein-coding
188947	chr5	160479851	160480150	+	0	NA	intron (NR_132748, intron 1 of 1)	intron (NR_132748, intron 1 of 1)	-5352	NR_029701	406938		NR_029701	ENSG00000283733	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
61522	chr13	59531501	59531750	+	0	NA	Intergenic	L2b|LINE|L2	-481093	NR_109838	100874195		NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
177355	chr4	110196351	110197400	+	0	NA	intron (NM_024090, intron 1 of 3)	CpG	1740	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
172910	chr4	3493971	3495330	+	0	NA	TTS (NM_001164673)	TTS (NM_001164673)	10106	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
62126	chr13	95675621	95676300	+	0	NA	non-coding (NR_132117, exon 1 of 2)	non-coding (NR_132117, exon 1 of 2)	965	NR_132117	100289274		NR_132117	ENSG00000247400	DNAJC3-DT	DNAJC3-AS1	DNAJC3 divergent transcript	ncRNA
212869	chr7	130864971	130865130	+	0	NA	Intergenic	L1MA4|LINE|L1	11760	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
27159	chr10	28386701	28386900	+	0	NA	Intergenic	L2a|LINE|L2	-83736	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
143541	chr20	31579301	31579500	+	0	NA	Intergenic	Intergenic	-6137	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
195327	chr6	36611801	36613100	+	0	NA	Intergenic	AluJb|SINE|Alu	10062	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
195243	chr6	36349321	36349580	+	0	NA	Intergenic	LTR83|LTR|ERVL	-12562	NM_001010903	389384		NM_001010903	ENSG00000189325	BNIP5	C6orf222	BCL2 interacting protein 5	protein-coding
66816	chr14	64746871	64747800	+	0	NA	3' UTR (NM_001024858, exon 35 of 35)	3' UTR (NM_001024858, exon 35 of 35)	38351	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
108335	chr18	63979251	63979950	+	0	NA	intron (NM_001348369, intron 2 of 6)	MER20|DNA|hAT-Charlie	9519	NM_001348368	5271		NM_002640	ENSG00000166401	SERPINB8	C18orf53|CAP2|PI-8|PI8|PSS5	serpin family B member 8	protein-coding
49352	chr12	22268471	22268630	+	0	NA	intron (NM_003034, intron 2 of 4)	THE1C|LTR|ERVL-MaLR	66164	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
30649	chr10	80467721	80468480	+	0	NA	promoter-TSS (NM_001351271)	promoter-TSS (NM_001351271)	-141	NM_001351272	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
48300	chr12	8986771	8986930	+	0	NA	intron (NR_137427, intron 1 of 2)	MSTA|LTR|ERVL-MaLR	-2696	NM_005810	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
215467	chr7	158151241	158151350	+	0	NA	intron (NM_130842, intron 5 of 21)	intron (NM_130842, intron 5 of 21)	296710	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
176241	chr4	86895771	86896030	+	0	NA	Intergenic	Intergenic	-3478	NM_001369889	132989		NM_144645	ENSG00000163633	C4orf36	-	chromosome 4 open reading frame 36	protein-coding
221427	chr8	123772421	123773330	+	0	NA	intron (NM_001317918, intron 1 of 22)	Tigger2a|DNA|TcMar-Tigger	4436	NM_001317918	157769		NM_144963	ENSG00000176853	FAM91A1	-	family with sequence similarity 91 member A1	protein-coding
175620	chr4	76125421	76125780	+	0	NA	intron (NR_103780, intron 7 of 10)	AluJr|SINE|Alu	22797	NM_017426	53371		NM_017426	ENSG00000138750	NUP54	DYT37	nucleoporin 54	protein-coding
12936	chr1	110676151	110676550	+	0	NA	Intergenic	Intergenic	-1410	NM_002232	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
210739	chr7	100632671	100633500	+	0	NA	exon (NM_001206855, exon 3 of 15)	exon (NM_001206855, exon 3 of 15)	565	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
144288	chr20	34699471	34699930	+	0	NA	Intergenic	Intergenic	-4644	NM_021202	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
136433	chr2	176554201	176554680	+	0	NA	Intergenic	Intergenic	46612	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
167458	chr3	129101371	129101530	+	0	NA	intron (NM_001204890, intron 11 of 12)	L2b|LINE|L2	20354	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
153540	chr22	26583871	26584030	+	0	NA	intron (NM_001362923, intron 1 of 7)	intron (NM_001362923, intron 1 of 7)	6182	NM_003595	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
9865	chr1	54295201	54295430	+	0	NA	intron (NM_145716, intron 4 of 17)	L2c|LINE|L2	58872	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
572	chr1	1267601	1267800	+	0	NA	intron (NM_194315, intron 2 of 7)	intron (NM_194315, intron 2 of 7)	6154	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
207885	chr7	50396801	50398600	+	0	NA	intron (NM_006060, intron 7 of 7)	intron (NM_006060, intron 7 of 7)	52650	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
45047	chr11	117045201	117045800	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	52928	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
217902	chr8	37891521	37892650	+	0	NA	intron (NM_025151, intron 1 of 4)	intron (NM_025151, intron 1 of 4)	7412	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
84806	chr16	31070571	31070930	+	0	NA	intron (NM_024706, intron 1 of 2)	AluSq2|SINE|Alu	2752	NM_001172668	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
210865	chr7	101135671	101136200	+	0	NA	intron (NM_000602, intron 7 of 8)	intron (NM_000602, intron 7 of 8)	8831	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
195570	chr6	37498821	37499080	+	0	NA	intron (NM_138493, intron 1 of 3)	MER5A|DNA|hAT-Charlie	943	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
106480	chr18	14395601	14395800	+	0	NA	Intergenic	Intergenic	58277	NR_026756	284233		NR_026756	ENSG00000290462	CYP4F35P	-	cytochrome P450 family 4 subfamily F member 35, pseudogene	pseudo
122986	chr19	50811721	50812080	+	0	NA	Intergenic	Intergenic	-5781	NR_038359	284365		NR_038359	ENSG00000293414	LINC01869	-	long intergenic non-protein coding RNA 1869	ncRNA
156284	chr22	40461251	40462000	+	0	NA	intron (NM_001282661, intron 4 of 13)	AluYm1|SINE|Alu	1815	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
13991	chr1	120630051	120630550	+	0	NA	intron (NR_144516, intron 4 of 43)	intron (NR_144516, intron 4 of 43)	35136	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
183740	chr5	81285901	81286580	+	0	NA	intron (NR_034122, intron 1 of 3)	ERV3-16A3_I-int|LTR|ERVL	15329	NR_034122	100131067		NR_034121	ENSG00000247572	CKMT2-AS1	-	CKMT2 antisense RNA 1	ncRNA
9567	chr1	51754001	51754200	+	0	NA	intron (NM_001350209, intron 9 of 23)	intron (NM_001350209, intron 9 of 23)	24250	NM_001350210	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
139818	chr2	230406901	230407100	+	0	NA	Intergenic	Intergenic	-9156	NM_001206703	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
112107	chr19	5582501	5582830	+	0	NA	Intergenic	Intergenic	-14631	NR_027064								
92193	chr17	7836601	7838750	+	0	NA	Intergenic	MIRb|SINE|MIR	-2231	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
78011	chr15	89765621	89765750	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-10647	NM_001039958	145873		NM_001039958	ENSG00000188095	MESP2	SCDO2|bHLHc6	mesoderm posterior bHLH transcription factor 2	protein-coding
217652	chr8	30078871	30079280	+	0	NA	intron (NM_016127, intron 1 of 5)	AluSq2|SINE|Alu	3989	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
153273	chr22	24149821	24150480	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-31337	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
88236	chr16	82192571	82193050	+	0	NA	Intergenic	Intergenic	-22586	NM_005792	10200		NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
212735	chr7	129898501	129898900	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	54260	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
34213	chr10	129773351	129773450	+	0	NA	Intergenic	Intergenic	69974	NR_036179	100422873		NR_036179	ENSG00000266676	MIR4297	-	microRNA 4297	ncRNA
220753	chr8	102290271	102290700	+	0	NA	intron (NM_001282873, intron 34 of 58)	intron (NM_001282873, intron 34 of 58)	51034	NR_125415	101927221		NR_125415		UBR5-DT	UBR5-AS1	UBR5 divergent transcript	ncRNA
74375	chr15	58773251	58773550	+	0	NA	intron (NM_001040450, intron 1 of 8)	intron (NM_001040450, intron 1 of 8)	2098	NM_001040450	54629		NM_019092	ENSG00000128923	MINDY2	FAM63B	MINDY lysine 48 deubiquitinase 2	protein-coding
91438	chr17	4744471	4744900	+	0	NA	exon (NM_001267822, exon 11 of 14)	exon (NM_001267822, exon 11 of 14)	4670	NM_032265	84225		NM_032265	ENSG00000141497	ZMYND15	SPGF14	zinc finger MYND-type containing 15	protein-coding
74423	chr15	59104761	59105730	+	0	NA	promoter-TSS (NM_004701)	promoter-TSS (NM_004701)	99	NM_004701	9133		NM_004701	ENSG00000157456	CCNB2	HsT17299	cyclin B2	protein-coding
37732	chr11	31798171	31798330	+	0	NA	intron (NM_001368908, intron 5 of 10)	intron (NM_001368908, intron 5 of 10)	2411	NM_001368930	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
26916	chr10	26465901	26466630	+	0	NA	intron (NM_019043, intron 2 of 14)	MLT1G3|LTR|ERVL-MaLR	27924	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
179771	chr5	298501	298700	+	0	NA	intron (NM_001267557, intron 2 of 3)	intron (NM_001267557, intron 2 of 3)	-23114	NM_001377236	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
47367	chr12	2299201	2299400	+	0	NA	intron (NM_199460, intron 3 of 49)	MER5B|DNA|hAT-Charlie	29524	NR_046769	100874370		NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
127778	chr2	44177371	44178130	+	0	NA	intron (NM_177969, intron 1 of 4)	intron (NM_177969, intron 1 of 4)	8875	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
128443	chr2	55599501	55599700	+	0	NA	intron (NM_020463, intron 3 of 14)	MLT1J2|LTR|ERVL-MaLR	18022	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
50709	chr12	48933731	48934880	+	0	NA	Intergenic	Intergenic	-8758	NM_001143782	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
205976	chr7	26172201	26173330	+	0	NA	intron (NM_004289, intron 1 of 3)	L1MC4|LINE|L1	20567	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
194728	chr6	33826751	33826850	+	0	NA	Intergenic	Intergenic	-22797	NM_001040109	4295		NM_002418	ENSG00000096395	MLN	-	motilin	protein-coding
107513	chr18	47953471	47953830	+	0	NA	Intergenic	Intergenic	-22504	NM_001135937	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
28285	chr10	46029801	46031500	+	0	NA	promoter-TSS (NM_001145260)	promoter-TSS (NM_001145260)	64	NM_001145263	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
19448	chr1	174798651	174798750	+	0	NA	intron (NM_001366447, intron 18 of 20)	intron (NM_001366447, intron 18 of 20)	-1038	NM_001330989	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
47678	chr12	6347371	6347950	+	0	NA	3' UTR (NM_001038, exon 13 of 13)	3' UTR (NM_001038, exon 13 of 13)	-5584	NM_001346092	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
134114	chr2	134122571	134123030	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	2865	NM_001371457	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
156330	chr22	40681721	40682180	+	0	NA	3' UTR (NM_005297, exon 2 of 2)	3' UTR (NM_005297, exon 2 of 2)	2466	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
210951	chr7	101321201	101322300	+	0	NA	promoter-TSS (NM_001130822)	promoter-TSS (NM_001130822)	62	NM_001287525	64792		NM_022777	ENSG00000128581	IFT22	CFAP9|FAP9|RABL5	intraflagellar transport 22	protein-coding
220904	chr8	106659751	106660200	+	0	NA	intron (NM_181354, intron 1 of 13)	intron (NM_181354, intron 1 of 13)	2167	NM_181354	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
117009	chr19	18907821	18908500	+	0	NA	intron (NM_007263, intron 3 of 9)	AluJb|SINE|Alu	11227	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
129675	chr2	70297371	70297530	+	0	NA	exon (NM_001329758, exon 4 of 4)	exon (NM_001329758, exon 4 of 4)	-3679	NM_001317171	6637		NM_003096	ENSG00000143977	SNRPG	SMG|Sm-G	small nuclear ribonucleoprotein polypeptide G	protein-coding
137928	chr2	201069171	201069850	+	0	NA	intron (NM_001321622, intron 1 of 12)	intron (NM_001321622, intron 1 of 12)	2161	NM_001321619	285172		NM_173822	ENSG00000155744	HYCC2	FAM126B	hyccin PI4KA lipid kinase complex subunit 2	protein-coding
52975	chr12	57479101	57480980	+	0	NA	promoter-TSS (NM_032496)	promoter-TSS (NM_032496)	-174	NM_032496	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
215838	chr8	6816201	6816400	+	0	NA	intron (NM_207411, intron 5 of 6).2	intron (NM_207411, intron 5 of 6).2	19224	NM_207411	389610		NM_207411	ENSG00000275591	XKR5	HARL2754|UNQ2754|XRG5A|XRG5BM	XK related 5	protein-coding
54418	chr12	90941051	90941150	+	0	NA	intron (NR_038868, intron 3 of 4)	intron (NR_038868, intron 3 of 4)	14076	NM_152638	196477		NM_152638	ENSG00000197651	CCER1	C12orf12	coiled-coil glutamate rich protein 1	protein-coding
13782	chr1	117346271	117346650	+	0	NA	Intergenic	Intergenic	-20989	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
75163	chr15	64639821	64640080	+	0	NA	intron (NM_015042, intron 3 of 9)	AluSc8|SINE|Alu	63331	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
21593	chr1	206525001	206525500	+	0	NA	intron (NM_182663, intron 1 of 5)	intron (NM_182663, intron 1 of 5)	17719	NM_182663	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
12307	chr1	100925021	100925480	+	0	NA	intron (NM_133496, intron 8 of 10)	L2a|LINE|L2	29160	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
103356	chr17	78110401	78111030	+	0	NA	3' UTR (NM_001374593, exon 19 of 19)	3' UTR (NM_001374593, exon 19 of 19)	18040	NM_001375353	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
237584	chrX	123784771	123785200	+	0	NA	Intergenic	Intergenic	-51933	NM_001081550	57187		NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|XLID12|dJ506G2.1|hTREX120	THO complex subunit 2	protein-coding
232266	chr9	134417921	134418430	+	0	NA	intron (NM_001291921, intron 4 of 8)	intron (NM_001291921, intron 4 of 8)	11615	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
201235	chr6	143678971	143679130	+	0	NA	intron (NM_001100165, intron 1 of 11)	intron (NM_001100165, intron 1 of 11)	1085	NM_001100164	9749		NM_014721	ENSG00000112419	PHACTR2	C6orf56	phosphatase and actin regulator 2	protein-coding
204183	chr7	2473951	2474250	+	0	NA	Intergenic	Intergenic	2283	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
223810	chr8	144800371	144800930	+	0	NA	intron (NM_001384908, intron 1 of 4)	intron (NM_001384908, intron 1 of 4)	1737	NM_213605	340385		NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
146004	chr20	46520951	46521250	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-7528	NM_001353824	55713		NM_018102	ENSG00000198185	ZNF334	-	zinc finger protein 334	protein-coding
79267	chr16	503601	504300	+	0	NA	intron (NM_001370401, intron 8 of 14)	intron (NM_001370401, intron 8 of 14)	23457	NR_024121	64493		NR_024121		LINC00235	C16orf10|LA16c-356B8.1|NCRNA00235	long intergenic non-protein coding RNA 235	ncRNA
220654	chr8	101123051	101124180	+	0	NA	Intergenic	Intergenic	46624	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
146331	chr20	49233301	49234300	+	0	NA	intron (NM_017895, intron 11 of 20)	intron (NM_017895, intron 11 of 20)	14384	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
210601	chr7	100425301	100425500	+	0	NA	intron (NM_001258008, intron 1 of 15)	intron (NM_001258008, intron 1 of 15)	3303	NM_001258008	55063		NM_017984	ENSG00000078487	ZCWPW1	ZCW1	zinc finger CW-type and PWWP domain containing 1	protein-coding
218160	chr8	41930201	41930700	+	0	NA	3' UTR (NM_006766, exon 17 of 17)	3' UTR (NM_006766, exon 17 of 17)	-33709	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
69063	chr14	91908001	91908200	+	0	NA	intron (NM_001384161, intron 5 of 12)	intron (NM_001384161, intron 5 of 12)	38932	NM_001384159	10516		NM_006329	ENSG00000140092	FBLN5	ADCL2|ARCL1A|ARMD3|CMT1H|DANCE|EVEC|FIBL-5|HNARMD|UP50	fibulin 5	protein-coding
159269	chr3	12957671	12957830	+	0	NA	intron (NM_001134382, intron 1 of 13)	L1MC1|LINE|L1	9980	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
189039	chr5	169653671	169653830	+	0	NA	intron (NR_156756, intron 1 of 52)	intron (NR_156756, intron 1 of 52)	16475	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
53294	chr12	64451811	64453530	+	0	NA	intron (NM_013254, intron 1 of 20)	intron (NM_013254, intron 1 of 20)	550	NM_013254	29110		NM_013254	ENSG00000183735	TBK1	FTDALS4|IIAE8|NAK|T2K	TANK binding kinase 1	protein-coding
118666	chr19	37505971	37507130	+	0	NA	promoter-TSS (NM_001013659)	promoter-TSS (NM_001013659)	-389	NM_001013659	390927		NM_001013659	ENSG00000188227	ZNF793	-	zinc finger protein 793	protein-coding
96912	chr17	42138301	42138500	+	0	NA	intron (NM_201434, intron 1 of 6)	intron (NM_201434, intron 1 of 6)	15596	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
98965	chr17	48677371	48677530	+	0	NA	Intergenic	AluSz6|SINE|Alu	-44891	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
63481	chr13	114159151	114159980	+	0	NA	Intergenic	L1PA10|LINE|L1	-26942	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
83397	chr16	27171171	27171330	+	0	NA	Intergenic	L2c|LINE|L2	-32276	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
24828	chr10	333201	334260	+	0	NA	intron (NM_014974, intron 29 of 36)	L1MB8|LINE|L1	153736	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
91793	chr17	7020971	7021130	+	0	NA	Intergenic	Intergenic	-1396	NR_038310	100506755		NR_038310	ENSG00000267532	MIR497HG	MIR195HG	mir-497-195 cluster host gene	ncRNA
221902	chr8	128653051	128653600	+	0	NA	Intergenic	MIR3|SINE|MIR	-88646	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
130935	chr2	87495821	87496500	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	26210	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
98990	chr17	48741021	48741630	+	0	NA	Intergenic	L1MC5|LINE|L1	-12575	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
225288	chr9	34500601	34501050	+	0	NA	exon (NM_001281428, exon 11 of 20)	exon (NM_001281428, exon 11 of 20)	22165	NM_198573	375704		NM_198573	ENSG00000168913	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
24121	chr1	235731671	235731850	+	0	NA	intron (NM_001301365, intron 34 of 52)	AluSx1|SINE|Alu	-81006	NM_001098721	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
203165	chr6	167090871	167091900	+	0	NA	Intergenic	Intergenic	-20422	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
51845	chr12	53465371	53465530	+	0	NA	TTS (NR_109828)	TTS (NR_109828)	982	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
30341	chr10	77637271	77637430	+	0	NA	exon (NM_001271522, exon 1 of 2)	exon (NM_001271522, exon 1 of 2)	458	NM_001161353	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
4471	chr1	21388151	21388950	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-43046	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
228203	chr9	97803271	97804380	+	0	NA	intron (NR_147055, intron 5 of 10)	CpG	49255	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
90242	chr17	753671	754030	+	0	NA	non-coding (NR_024120, exon 1 of 1)	non-coding (NR_024120, exon 1 of 1)	1517	NR_024120	100131454		NR_024120	ENSG00000293440	DBIL5P	ELP2P	diazepam binding inhibitor-like 5, pseudogene	pseudo
33734	chr10	122379021	122379480	+	0	NA	intron (NM_001377254, intron 2 of 11)	LTR78B|LTR|ERV1	4542	NM_001377257	59338		NM_021622	ENSG00000107679	PLEKHA1	TAPP1	pleckstrin homology domain containing A1	protein-coding
111778	chr19	4428071	4428230	+	0	NA	intron (NM_005483, intron 7 of 14)	AluSx|SINE|Alu	-17828	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
37536	chr11	18665371	18665730	+	0	NA	Intergenic	Intergenic	-31208	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
229191	chr9	114653301	114653850	+	0	NA	Intergenic	LTR41|LTR|ERVL	4230	NM_001354645	105376230		NM_001354645	ENSG00000230054	TEX53	-	testis expressed 53	protein-coding
124717	chr2	3650551	3651700	+	0	NA	Intergenic	CpG	-7075	NM_018436	55821		NM_018436	ENSG00000151360	ALLC	ALC	allantoicase	protein-coding
221652	chr8	125941571	125943130	+	0	NA	non-coding (NR_038446, exon 2 of 2)	non-coding (NR_038446, exon 2 of 2)	8847	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
57561	chr12	122215321	122215780	+	0	NA	intron (NM_019887, intron 6 of 6)	AluSq2|SINE|Alu	10221	NM_001278304	56616		NM_019887	ENSG00000184047	DIABLO	DFNA64|SMAC	diablo IAP-binding mitochondrial protein	protein-coding
119743	chr19	41272951	41273600	+	0	NA	intron (NM_144732, intron 3 of 14)	intron (NM_144732, intron 3 of 14)	8194	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
36043	chr11	2928701	2930000	+	0	NA	promoter-TSS (NM_003311)	promoter-TSS (NM_003311)	70	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
206041	chr7	27101771	27102450	+	0	NA	exon (NM_006735, exon 1 of 2)	exon (NM_006735, exon 1 of 2)	573	NM_006735	3199		NM_006735	ENSG00000105996	HOXA2	HOX1K|MCOHI	homeobox A2	protein-coding
116540	chr19	18206321	18206950	+	0	NA	Intergenic	AluSx1|SINE|Alu	1905	NR_134910	102725254		NR_134910	ENSG00000268650	LOC102725254	-	uncharacterized LOC102725254	ncRNA
192163	chr6	17596501	17596900	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-3602	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
135968	chr2	172094021	172094700	+	0	NA	Intergenic	Intergenic	8540	NM_004405	1746		NM_004405	ENSG00000115844	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
177948	chr4	138910821	138911100	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	101686	NR_133945	105377448		NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
64364	chr14	24122451	24123300	+	0	NA	intron (NM_025230, intron 13 of 14)	intron (NM_025230, intron 13 of 14)	7590	NM_181357	80344		NM_025230	ENSG00000100897	DCAF11	GL014|PRO2389|WDR23	DDB1 and CUL4 associated factor 11	protein-coding
129941	chr2	73830471	73830630	+	0	NA	intron (NR_148670, intron 2 of 12)	intron (NR_148670, intron 2 of 12)	1583	NM_006463	10617		NM_006463	ENSG00000124356	STAMBP	AMSH|MICCAP	STAM binding protein	protein-coding
17784	chr1	159200871	159201030	+	0	NA	non-coding (NR_037870, exon 2 of 4)	non-coding (NR_037870, exon 2 of 4)	1472	NR_037870	100131825		NR_037870		CADM3-AS1	-	CADM3 antisense RNA 1	ncRNA
13586	chr1	116259651	116259980	+	0	NA	Intergenic	Intergenic	-113429	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
121009	chr19	45783221	45783500	+	0	NA	promoter-TSS (NM_001288764)	promoter-TSS (NM_001288764)	-870	NM_001081560	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
124689	chr2	3520621	3520880	+	0	NA	Intergenic	L2c|LINE|L2	-1219	NM_018269	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
21469	chr1	205594871	205595030	+	0	NA	intron (NM_181644, intron 7 of 9)	MER5B|DNA|hAT-Charlie	-25645	NR_152721	284578		NR_027086		MFSD4A-AS1	-	MFSD4A antisense RNA 1	ncRNA
69301	chr14	93112751	93113780	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	2660	NM_001142594	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
25461	chr10	6642651	6643200	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	7855	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
160500	chr3	30626101	30626930	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	19914	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
213314	chr7	135166251	135167030	+	0	NA	TTS (NM_018295)	TTS (NM_018295)	2834	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
56538	chr12	116818801	116819900	+	0	NA	intron (NM_001382266, intron 7 of 10)	(GGCCCGG)n|Simple_repeat|Simple_repeat	62091	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
69972	chr14	99819671	99819830	+	0	NA	intron (NM_001375412, intron 1 of 20)	intron (NM_001375412, intron 1 of 20)	26337	NM_001375412	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
57292	chr12	121645251	121645550	+	0	NA	Intergenic	AluJr|SINE|Alu	18850	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
119644	chr19	40810501	40811580	+	0	NA	promoter-TSS (NR_144551)	promoter-TSS (NR_144551)	60	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
146447	chr20	49678171	49678330	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	35628	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
132751	chr2	109757071	109757230	+	0	NA	Intergenic	Intergenic	-3289	NM_001384362	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
20246	chr1	193456721	193456980	+	0	NA	Intergenic	Intergenic	152105	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
185256	chr5	123517901	123518430	+	0	NA	intron (NM_001364146, intron 1 of 10)	intron (NM_001364146, intron 1 of 10)	5988	NM_001270574	1456		NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding
56769	chr12	120164571	120164730	+	0	NA	exon (NM_006836, exon 17 of 58)	exon (NM_006836, exon 17 of 58)	-9151	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
124560	chr2	460801	461780	+	0	NA	Intergenic	MER65A|LTR|ERV1	31365	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
102278	chr17	75311971	75312380	+	0	NA	Intergenic	Intergenic	-22726	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
82372	chr16	16006821	16007280	+	0	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	57434	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
25800	chr10	11182901	11184450	+	0	NA	intron (NM_001326346, intron 2 of 11)	L1ME1|LINE|L1	18645	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
82901	chr16	21637271	21637700	+	0	NA	intron (NM_001288660, intron 4 of 4)	LTR12D|LTR|ERV1	15123	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
151326	chr21	45594521	45595030	+	0	NA	intron (NR_146912, intron 1 of 1)	L1MEg|LINE|L1	1121	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
113330	chr19	8595901	8596500	+	0	NA	exon (NM_030957, exon 11 of 26)	exon (NM_030957, exon 11 of 26)	-4004	NM_001282352	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
135996	chr2	172273971	172274130	+	0	NA	Intergenic	Intergenic	-153286	NM_001316306	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
233661	chrX	1027101	1027330	+	0	NA	Intergenic	AluSx1|SINE|Alu	185434	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
232032	chr9	133402501	133402900	+	0	NA	intron (NM_153710, intron 13 of 17)	intron (NM_153710, intron 13 of 17)	-11637	NR_024514	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
65900	chr14	55273001	55273380	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	1036	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
73254	chr15	41821021	41821280	+	0	NA	intron (NM_014994, intron 23 of 30)	intron (NM_014994, intron 23 of 30)	-6935	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
168864	chr3	152288101	152288750	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-10589	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
14831	chr1	146316801	146317200	+	0	NA	Intergenic	Intergenic	19009	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
81084	chr16	4346921	4347180	+	0	NA	intron (NM_001201479, intron 27 of 30)	AluJb|SINE|Alu	4271	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
123050	chr19	51326771	51327130	+	0	NA	intron (NM_001101372, intron 5 of 7)	CpG	15102	NM_001101372	402665		NM_001101372	ENSG00000142549	IGLON5	-	IgLON family member 5	protein-coding
203504	chr7	614401	614900	+	0	NA	intron (NM_001164759, intron 4 of 10)	AluSx|SINE|Alu	11252	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
10510	chr1	66770621	66771080	+	0	NA	intron (NM_152665, intron 3 of 4)	intron (NM_152665, intron 3 of 4)	18391	NM_152665	200132		NM_152665	ENSG00000152760	DYNLT5	TCTEX1D1	dynein light chain Tctex-type family member 5	protein-coding
121303	chr19	46733921	46734180	+	0	NA	intron (NM_001039877, intron 4 of 17)	intron (NM_001039877, intron 4 of 17)	-12007	NM_024301	79147		NM_024301	ENSG00000181027	FKRP	FKTR|LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
127495	chr2	42260001	42260200	+	0	NA	intron (NM_001145076, intron 3 of 21)	FLAM_C|SINE|Alu	-89869	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
178152	chr4	142345771	142346280	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	-40081	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
45110	chr11	117106951	117107050	+	0	NA	Intergenic	AluSz|SINE|Alu	-8572	NM_001366687	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
226890	chr9	78261101	78261980	+	0	NA	intron (NM_001349839, intron 11 of 16)	L1ME4a|LINE|L1	25465	NM_001330693	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
213087	chr7	131102501	131103500	+	0	NA	intron (NR_109852, intron 2 of 5)	AluSx1|SINE|Alu	4030	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
60028	chr13	32588821	32589230	+	0	NA	intron (NM_015032, intron 1 of 34)	intron (NM_015032, intron 1 of 34)	2573	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
61726	chr13	74123451	74124150	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	10129	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
18201	chr1	160876971	160877680	+	0	NA	intron (NM_017625, intron 7 of 7)	intron (NM_017625, intron 7 of 7)	7855	NM_017625	55600		NM_017625	ENSG00000179914	ITLN1	HL-1|HL1|INTL|ITLN|LFR|hIntL|omentin	intelectin 1	protein-coding
171035	chr3	195183071	195183230	+	0	NA	intron (NM_001308069, intron 2 of 3)	MIRc|SINE|MIR	35279	NR_102711	101410543		NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
29872	chr10	72625421	72626830	+	0	NA	promoter-TSS (NM_001195518)	promoter-TSS (NM_001195518)	-46	NM_001195518	10367		NM_006077	ENSG00000107745	MICU1	CALC|CBARA1|EFHA3|MPXPS|ara CALC	mitochondrial calcium uptake 1	protein-coding
73432	chr15	43130771	43131230	+	0	NA	Intergenic	Intergenic	-2115	NM_001347009	80021		NM_024956	ENSG00000137842	TMEM62	-	transmembrane protein 62	protein-coding
125318	chr2	10712321	10712580	+	0	NA	Intergenic	L2|LINE|L2	-9180	NM_144583	245973		NM_144583	ENSG00000143882	ATP6V1C2	ATP6C2|VMA5	ATPase H+ transporting V1 subunit C2	protein-coding
14138	chr1	121008621	121009850	+	0	NA	intron (NR_135813, intron 2 of 2)	CpG	42932	NR_135813	101929798		NR_135813	ENSG00000290904	PDE4DIPP4	CH17-118O6.3	PDE4DIP pseudogene 4	pseudo
89913	chr16	89708471	89709100	+	0	NA	intron (NM_004913, intron 13 of 14)	intron (NM_004913, intron 13 of 14)	-3071	NR_036480	100128881		NR_036480	ENSG00000261373	VPS9D1-AS1	MYU	VPS9D1 antisense RNA 1	ncRNA
162881	chr3	49379401	49380080	+	0	NA	intron (NM_001313943, intron 1 of 5)	AluJb|SINE|Alu	-21140	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
219629	chr8	80139921	80140250	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	31036	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
50217	chr12	46221451	46221550	+	0	NA	intron (NM_001278387, intron 6 of 17)	intron (NM_001278387, intron 6 of 17)	45016	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
96151	chr17	39678671	39678830	+	0	NA	intron (NM_001291726, intron 2 of 6)	intron (NM_001291726, intron 2 of 6)	9307	NM_033419	93210		NM_033419	ENSG00000161395	PGAP3	AGLA546|CAB2|PERLD1|PP1498|hCOS16	post-GPI attachment to proteins phospholipase 3	protein-coding
107132	chr18	35117401	35117700	+	0	NA	intron (NR_046177, intron 4 of 6)	intron (NR_046177, intron 4 of 6)	76137	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
44543	chr11	108068821	108069350	+	0	NA	intron (NM_003478, intron 7 of 18)	AluJr4|SINE|Alu	-52482	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
113284	chr19	8540521	8540780	+	0	NA	intron (NM_012335, intron 15 of 27)	AluSx1|SINE|Alu	-26483	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
9137	chr1	45498201	45498400	+	0	NA	intron (NR_033298, intron 2 of 5)	SVA_D|Retroposon|SVA	1773	NM_001358406	126661		NM_001102601	ENSG00000280670	CCDC163	C1orf231|CCDC163P	CCDC163 homolog	protein-coding
197367	chr6	73470751	73471200	+	0	NA	intron (NM_133645, intron 3 of 12)	L1ME4b|LINE|L1	9238	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
180324	chr5	6383401	6383600	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-4953	NM_032286	84246		NM_032286	ENSG00000133398	MED10	L6|NUT2|TRG20	mediator complex subunit 10	protein-coding
177589	chr4	120446021	120446280	+	0	NA	Intergenic	L1M2|LINE|L1	-379302	NM_002358	4085		NM_002358	ENSG00000164109	MAD2L1	HSMAD2|MAD2	mitotic arrest deficient 2 like 1	protein-coding
132939	chr2	111447621	111448100	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	47301	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
58904	chr13	19641221	19641480	+	0	NA	intron (NM_017520, intron 1 of 13)	AluSz|SINE|Alu	7691	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
202937	chr6	160534151	160534750	+	0	NA	intron (NM_005577, intron 37 of 38)	intron (NM_005577, intron 37 of 38)	-23326	NR_028093	80350		NM_024492	ENSG00000290613	LPAL2	APOA2|APOAL|APOARGC|apo(a)rg-C	lipoprotein(a) like 2 (pseudogene)	pseudo
116273	chr19	17715671	17716030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3630	NM_018174	55201		NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule associated protein 1S	protein-coding
190816	chr6	1396871	1397250	+	0	NA	Intergenic	Intergenic	-6649	NR_106778	102466720		NR_106778	ENSG00000275859	MIR6720	hsa-mir-6720|mir-6720	microRNA 6720	ncRNA
169391	chr3	160554901	160555300	+	0	NA	intron (NM_002268, intron 1 of 16)	MER21B|LTR|ERVL	10471	NM_002268	3840		NM_002268	ENSG00000186432	KPNA4	IPOA3|QIP1|SRP3	karyopherin subunit alpha 4	protein-coding
239058	chrY	7286551	7287430	+	0	NA	intron (NR_028062, intron 1 of 7)	intron (NR_028062, intron 1 of 7)	13018	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
64928	chr14	35789601	35789930	+	0	NA	intron (NM_014990, intron 1 of 40)	intron (NM_014990, intron 1 of 40)	19530	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
96858	chr17	42024171	42024330	+	0	NA	3' UTR (NM_001001349, exon 4 of 4)	3' UTR (NM_001001349, exon 4 of 4)	4160	NM_001144929	28511		NM_017595	ENSG00000168256	NKIRAS2	KBRAS2|kappaB-Ras2	NFKB inhibitor interacting Ras like 2	protein-coding
190531	chr5	180648551	180649830	+	0	NA	intron (NM_001354989, intron 1 of 29)	CpG	410	NM_001354989	2324		NM_002020	ENSG00000037280	FLT4	CHTD7|FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3	fms related receptor tyrosine kinase 4	protein-coding
99876	chr17	56629751	56630050	+	0	NA	Intergenic	Intergenic	36201	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
177660	chr4	121307471	121308250	+	0	NA	Intergenic	Intergenic	73158	NM_198179	84109		NM_198179	ENSG00000186867	QRFPR	AQ27|GPR103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
62313	chr13	99042901	99043250	+	0	NA	intron (NM_001318849, intron 1 of 54)	LTR55|LTR|ERVL?	-27290	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
135640	chr2	168245151	168245830	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	2105	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
217427	chr8	28405121	28405480	+	0	NA	Intergenic	Intergenic	-18840	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
86680	chr16	67513721	67514800	+	0	NA	Intergenic	AluJo|SINE|Alu	14485	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
136221	chr2	174586471	174587150	+	0	NA	intron (NM_001077269, intron 1 of 7)	MER5A1|DNA|hAT-Charlie	10994	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
19555	chr1	179034051	179034150	+	0	NA	intron (NM_001324311, intron 1 of 7)	MLT1H|LTR|ERVL-MaLR	7976	NM_001324311	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
233805	chrX	1459471	1459830	+	0	NA	Intergenic	(TCTA)n|Simple_repeat|Simple_repeat	-5888	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
235146	chrX	41102951	41103250	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	17655	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
188996	chr5	168219721	168220080	+	0	NA	intron (NM_001080428, intron 19 of 24)	intron (NM_001080428, intron 19 of 24)	12472	NR_109894	101927862		NR_109894	ENSG00000253978	TENM2-AS1	CTB-178M22.2	TENM2 antisense RNA 2	ncRNA
197861	chr6	89078471	89080000	+	0	NA	Intergenic	Intergenic	-1516	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
85532	chr16	53064771	53065530	+	0	NA	intron (NM_001308319, intron 1 of 38)	MamRep605|LTR?|LTR?	10159	NR_168120	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
172789	chr4	2946951	2947650	+	0	NA	intron (NR_015453, intron 3 of 3)	intron (NR_015453, intron 3 of 3)	11754	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
162387	chr3	48090371	48090600	+	0	NA	Intergenic	AluSx|SINE|Alu	-1637	NM_001384844	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
158274	chr22	50339601	50339800	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-3627	NM_001351647	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
88125	chr16	81610001	81610200	+	0	NA	intron (NM_030629, intron 2 of 20)	intron (NM_030629, intron 2 of 20)	-1248	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
113766	chr19	10516901	10519780	+	0	NA	promoter-TSS (NM_001166215)	promoter-TSS (NM_001166215)	-375	NM_001166215	53637		NM_030760	ENSG00000180739	S1PR5	EDG8|Edg-8|S1P5|SPPR-1|SPPR-2	sphingosine-1-phosphate receptor 5	protein-coding
6128	chr1	27355171	27355680	+	0	NA	exon (NM_001297609, exon 28 of 28)	exon (NM_001297609, exon 28 of 28)	11536	NM_001297609	9064		NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
108470	chr18	70627201	70627650	+	0	NA	Intergenic	Intergenic	23529	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
143416	chr20	29572671	29572830	+	0	NA	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	24031	NR_133643	105379478		NR_133643		FAM242B	-	family with sequence similarity 242 member B	ncRNA
214812	chr7	151206651	151208150	+	0	NA	TTS (NM_001369125)	TTS (NM_001369125)	-1904	NM_001304419	392843		NM_001304419	ENSG00000278685	IQCA1L	IQCA1P1	IQ motif containing with AAA domain 1 like	protein-coding
199708	chr6	125298471	125298630	+	0	NA	intron (NM_016063, intron 3 of 5)	MER110|LTR|ERV1	3417	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
92016	chr17	7466401	7467450	+	0	NA	intron (NM_020899, intron 2 of 3)	intron (NM_020899, intron 2 of 3)	12706	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
984	chr1	1826471	1826630	+	0	NA	intron (NM_001282539, intron 1 of 10)	intron (NM_001282539, intron 1 of 10)	-46519	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
204458	chr7	4639951	4640250	+	0	NA	Intergenic	L1MB3|LINE|L1	-42195	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
194539	chr6	33313501	33315350	+	0	NA	promoter-TSS (NM_003190).3	promoter-TSS (NM_003190).3	-38	NM_172208	6892		NM_003190	ENSG00000231925	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein	protein-coding
96410	chr17	40158971	40159130	+	0	NA	intron (NM_007359, intron 3 of 13)	AluJb|SINE|Alu	-2883	NR_106926	102466986		NR_106926	ENSG00000284144	MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
175927	chr4	80335671	80336330	+	0	NA	intron (NM_001206997, intron 1 of 6)	CpG	270	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
95585	chr17	37094501	37094700	+	0	NA	intron (NM_198836, intron 54 of 55).2	intron (NM_198836, intron 54 of 55).2	60855	NR_036056	100422969		NR_036056	ENSG00000276326	MIR2909	-	microRNA 2909	ncRNA
136843	chr2	184604151	184604270	+	0	NA	intron (NM_194250, intron 1 of 3)	AluYk3|SINE|Alu	5681	NM_194250	91752		NM_194250	ENSG00000170396	ZNF804A	C2orf10	zinc finger protein 804A	protein-coding
225794	chr9	37504771	37504930	+	0	NA	Intergenic	LTR67B|LTR|ERVL	18902	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
183518	chr5	79616501	79616700	+	0	NA	intron (NM_173797, intron 2 of 15)	AluJb|SINE|Alu	4159	NM_001349554	167153		NM_173797	ENSG00000164329	TENT2	APD4|GLD2|PAPD4|TUT2	terminal nucleotidyltransferase 2	protein-coding
60156	chr13	40026201	40026800	+	0	NA	Intergenic	Intergenic	-155309	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
186762	chr5	139327901	139328230	+	0	NA	intron (NM_199189, intron 17 of 17)	AluSq2|SINE|Alu	-13767	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
169897	chr3	177603221	177603550	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	161464	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
53467	chr12	65926371	65927130	+	0	NA	intron (NM_003483, intron 3 of 4)	intron (NM_003483, intron 3 of 4)	-44425	NR_158985	100129940		NR_120478	ENSG00000197301	HMGA2-AS1	-	HMGA2 antisense RNA 1	ncRNA
73615	chr15	44568851	44569200	+	0	NA	intron (NM_025137, intron 35 of 39)	AluSp|SINE|Alu	31878	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
83027	chr16	22305321	22305780	+	0	NA	intron (NM_018119, intron 3 of 20).2	MIR|SINE|MIR	8141	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
118859	chr19	38649851	38649950	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	2251	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
41459	chr11	66114301	66114800	+	0	NA	intron (NM_018026, intron 1 of 23)	L1ME3G|LINE|L1	44278	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
1582	chr1	3596201	3596800	+	0	NA	intron (NM_001409, intron 2 of 36)	intron (NM_001409, intron 2 of 36)	15008	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
45451	chr11	118449251	118449650	+	0	NA	intron (NM_001197104, intron 1 of 35)	AluJr|SINE|Alu	12958	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
74865	chr15	63555001	63555880	+	0	NA	intron (NR_046342, intron 5 of 15)	MER3|DNA|hAT-Charlie	-41947	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
79494	chr16	779951	780050	+	0	NA	Intergenic	Intergenic	8381	NM_001369658	113000		NM_058192	ENSG00000007376	RPUSD1	C16orf40|RLUCL	RNA pseudouridine synthase domain containing 1	protein-coding
169436	chr3	161424001	161424230	+	0	NA	Intergenic	Intergenic	-2312	NR_102265	101243545		NR_102265	ENSG00000240567	LINC02067	-	long intergenic non-protein coding RNA 2067	ncRNA
134755	chr2	145323521	145323800	+	0	NA	Intergenic	Intergenic	655693	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
72580	chr15	34920351	34921030	+	0	NA	intron (NM_014691, intron 13 of 34)	AluYm1|SINE|Alu	49052	NM_014691	9716		NM_014691	ENSG00000021776	AQR	IBP160|fSAP164	aquarius intron-binding spliceosomal factor	protein-coding
165642	chr3	101802971	101803680	+	0	NA	intron (NR_145993, intron 5 of 6)	intron (NR_145993, intron 5 of 6)	23661	NM_001348998	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
133235	chr2	113203721	113204950	+	0	NA	3' UTR (NM_012455, exon 17 of 17)	3' UTR (NM_012455, exon 17 of 17)	30364	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
22012	chr1	209850471	209850650	+	0	NA	intron (NM_014388, intron 11 of 11)	intron (NM_014388, intron 11 of 11)	22588	NM_014388	27042		NM_014388	ENSG00000117597	UTP25	C1orf107|DEF|DIEXF|DJ434O14.5	UTP25 small subunit processome component	protein-coding
192310	chr6	21595011	21595930	+	0	NA	exon (NM_003107, exon 1 of 1)	exon (NM_003107, exon 1 of 1)	1719	NM_003107	6659		NM_003107	ENSG00000124766	SOX4	CSS10|EVI16	SRY-box transcription factor 4	protein-coding
35380	chr11	1305701	1306250	+	0	NA	intron (NM_001318516, intron 1 of 4)	intron (NM_001318516, intron 1 of 4)	-3185	NM_001318514	54472		NM_019009	ENSG00000078902	TOLLIP	IL-1RAcPIP	toll interacting protein	protein-coding
197955	chr6	89952071	89953330	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	58231	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
87009	chr16	68246521	68246780	+	0	NA	intron (NM_001363551, intron 1 of 5)	L2b|LINE|L2	1277	NM_012320	23659		NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	phospholipase A2 group XV	protein-coding
47877	chr12	6686621	6687500	+	0	NA	intron (NM_001039920, intron 2 of 8)	intron (NM_001039920, intron 2 of 8)	2315	NM_133476	171017		NM_133476	ENSG00000126746	ZNF384	CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1	zinc finger protein 384	protein-coding
77576	chr15	84992351	84992950	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	10676	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
73774	chr15	45614271	45614630	+	0	NA	Intergenic	Intergenic	-16698	NM_001271213	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
231356	chr9	130461121	130461680	+	0	NA	intron (NM_000050, intron 5 of 15)	intron (NM_000050, intron 5 of 15)	16439	NM_054012	445		NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding
227383	chr9	89508501	89508700	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-10487	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
74890	chr15	63594621	63595500	+	0	NA	TTS (NM_006537)	TTS (NM_006537)	-2327	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
225693	chr9	36501201	36501580	+	0	NA	Intergenic	AluSz|SINE|Alu	-71472	NR_046337	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
197605	chr6	81749901	81750300	+	0	NA	exon (NM_017633, exon 3 of 3)	exon (NM_017633, exon 3 of 3)	2581	NM_017633	55603		NM_017633	ENSG00000112773	TENT5A	C6orf37|FAM46A|OI18|XTP11	terminal nucleotidyltransferase 5A	protein-coding
172617	chr4	2514251	2514750	+	0	NA	3' UTR (NM_002938, exon 8 of 8)	3' UTR (NM_002938, exon 8 of 8)	-20875	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
123444	chr19	54131901	54132800	+	0	NA	TTS (NM_015629)	TTS (NM_015629)	-5412	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
24730	chr1	247906351	247906730	+	0	NA	Intergenic	AluSx|SINE|Alu	10953	NM_001001957	343171		NM_001001957	ENSG00000238243	OR2W3	OR2W3P|OR2W8P|OST718	olfactory receptor family 2 subfamily W member 3	protein-coding
67587	chr14	71753051	71753380	+	0	NA	Intergenic	Intergenic	166917	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
188640	chr5	157226921	157227800	+	0	NA	intron (NM_005546, intron 6 of 16)	intron (NM_005546, intron 6 of 16)	-38763	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
107964	chr18	58438501	58439230	+	0	NA	Intergenic	Intergenic	-12209	NR_029667	406906		NR_029667	ENSG00000284440	MIR122	MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A|mir-122	microRNA 122	ncRNA
156475	chr22	41262471	41262830	+	0	NA	intron (NM_001278651, intron 6 of 16)	intron (NM_001278651, intron 6 of 16)	-9600	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
227089	chr9	85715221	85716800	+	0	NA	intron (NM_001330701, intron 1 of 25)	L2-3_Crp|LINE|L2	25944	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
128833	chr2	63443871	63444030	+	0	NA	intron (NR_148704, intron 7 of 18)	L2a|LINE|L2	-5943	NR_122106	51057		NM_015910	ENSG00000143951	WDPCP	BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ	WD repeat containing planar cell polarity effector	protein-coding
105177	chr17	82276251	82276550	+	0	NA	Intergenic	AluJb|SINE|Alu	-2650	NR_110578	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
11709	chr1	91866051	91866950	+	0	NA	intron (NM_001195684, intron 2 of 17)	L2a|LINE|L2	19651	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
235179	chrX	41277051	41277150	+	0	NA	TTS (NR_135616)	TTS (NR_135616)	1361	NR_135616	105373185		NR_135616	ENSG00000223714	LINC02601	-	long intergenic non-protein coding RNA 2601	ncRNA
167183	chr3	128132301	128132500	+	0	NA	intron (NM_001319086, intron 1 of 9)	L1MA3|LINE|L1	-8588	NM_003707	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
110984	chr19	3006151	3006600	+	0	NA	intron (NM_003260, intron 15 of 19)	CpG	22905	NM_001300846	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
15701	chr1	150999051	150999700	+	0	NA	exon (NM_001376664, exon 7 of 10)	exon (NM_001376664, exon 7 of 10)	7527	NM_001040217	55793		NM_018379	ENSG00000143409	MINDY1	FAM63A|MINDY-1	MINDY lysine 48 deubiquitinase 1	protein-coding
16032	chr1	152218451	152219500	+	0	NA	exon (NM_001009931, exon 3 of 3)	exon (NM_001009931, exon 3 of 3)	5218	NM_001009931	388697		NM_001009931	ENSG00000197915	HRNR	FLG3|S100A16|S100a18	hornerin	protein-coding
62235	chr13	98526471	98527030	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-4625	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
39981	chr11	62611621	62614080	+	0	NA	promoter-TSS (NM_000327)	promoter-TSS (NM_000327)	-75	NM_001300794	256364		NM_153265	ENSG00000149499	EML3	ELP95|EMAP3|EMAP95	EMAP like 3	protein-coding
71007	chr14	104750251	104750350	+	0	NA	Intergenic	Intergenic	-2847	NM_021709	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
161061	chr3	38031021	38032080	+	0	NA	Intergenic	Intergenic	-1908	NM_006225	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
61203	chr13	49442501	49442700	+	0	NA	intron (NM_001079670, intron 1 of 10)	AluSq2|SINE|Alu	1464	NM_001079670	81617		NM_030925	ENSG00000102547	CAB39L	MLAA-34|MO25-BETA|MO2L|bA103J18.3	calcium binding protein 39 like	protein-coding
215448	chr7	157875021	157875880	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	20865	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
32497	chr10	102713151	102715800	+	0	NA	promoter-TSS (NR_146992)	promoter-TSS (NR_146992)	-43	NM_001350989	118980		NM_178858	ENSG00000156398	SFXN2	SLC56A2	sideroflexin 2	protein-coding
120681	chr19	45121621	45122330	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	28796	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
48471	chr12	9763021	9763500	+	0	NA	Intergenic	Intergenic	-2359	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
87663	chr16	74596321	74596780	+	0	NA	intron (NM_001145667, intron 1 of 25)	MER33|DNA|hAT-Charlie	10564	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
145933	chr20	46023851	46024280	+	0	NA	intron (NM_001134771, intron 1 of 25)	intron (NM_001134771, intron 1 of 25)	-1992	NR_147699	109729184		NR_147699	ENSG00000204044	SLC12A5-AS1	-	SLC12A5 and MMP9 antisense RNA 1	ncRNA
3291	chr1	15325351	15325650	+	0	NA	intron (NM_052929, intron 11 of 30)	intron (NM_052929, intron 11 of 30)	18383	NR_148918	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
237262	chrX	110315521	110315780	+	0	NA	intron (NM_001171689, intron 3 of 7)	intron (NM_001171689, intron 3 of 7)	2435	NM_015365	9949		NM_015365	ENSG00000101935	AMMECR1	AMMERC1|MFHIEN	AMMECR nuclear protein 1	protein-coding
210528	chr7	100230771	100231650	+	0	NA	intron (NR_166147, intron 2 of 4)	intron (NR_166147, intron 2 of 4)	11962	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
137551	chr2	197233601	197234400	+	0	NA	intron (NM_153697, intron 1 of 9)	L1MB1|LINE|L1	36009	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
127213	chr2	38592551	38593200	+	0	NA	intron (NM_138394, intron 1 of 12)	intron (NM_138394, intron 1 of 12)	10053	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
33472	chr10	119068371	119068930	+	0	NA	intron (NM_003750, intron 6 of 21)	AluSq2|SINE|Alu	-8512	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
222187	chr8	133033501	133034330	+	0	NA	intron (NM_003235, intron 41 of 47)	intron (NM_003235, intron 41 of 47)	12666	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
170785	chr3	188959301	188959500	+	0	NA	Intergenic	MIR|SINE|MIR	-11761	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
188968	chr5	163459271	163461000	+	0	NA	promoter-TSS (NR_138427)	promoter-TSS (NR_138427)	-33	NM_145266	134492		NM_145266	ENSG00000170584	NUDCD2	NudCL2	NudC domain containing 2	protein-coding
18886	chr1	168224051	168224550	+	0	NA	Intergenic	L1MB8|LINE|L1	-1704	NM_199344	375035		NM_199344	ENSG00000213064	SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
159028	chr3	10983451	10983550	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-9234	NM_001348251	6529		NM_003042	ENSG00000157103	SLC6A1	GABATHG|GABATR|GAT1|MAE|hGAT-1	solute carrier family 6 member 1	protein-coding
127982	chr2	46915201	46916950	+	0	NA	promoter-TSS (NM_139279)	promoter-TSS (NM_139279)	-22	NM_001171510	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
223429	chr8	143955371	143956080	+	0	NA	intron (NM_000445, intron 2 of 32)	AluJb|SINE|Alu	-1891	NM_201379	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
156562	chr22	41449801	41450580	+	0	NA	Intergenic	AluY|SINE|Alu	-3389	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
113798	chr19	10567671	10569730	+	0	NA	5' UTR (NM_001800, exon 1 of 2)	5' UTR (NM_001800, exon 1 of 2)	279	NM_001800	1032		NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
153718	chr22	29293601	29294050	+	0	NA	intron (NM_001163286, intron 10 of 15)	AluSx1|SINE|Alu	-13198	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
39792	chr11	61956701	61956900	+	0	NA	intron (NR_134580, intron 4 of 10)	intron (NR_134580, intron 4 of 10)	1565	NM_001363591	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
212906	chr7	130896521	130897590	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	16255	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
221535	chr8	124708351	124708850	+	0	NA	intron (NM_001363300, intron 1 of 12)	intron (NM_001363300, intron 1 of 12)	19873	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
60398	chr13	40957501	40957900	+	0	NA	intron (NM_001370329, intron 4 of 9)	MSTA|LTR|ERVL-MaLR	24582	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
164885	chr3	71089071	71089650	+	0	NA	intron (NM_001244810, intron 7 of 20)	MLT1F|LTR|ERVL-MaLR	-24436	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
130502	chr2	85592271	85592430	+	0	NA	intron (NM_006634, intron 2 of 2)	AluJb|SINE|Alu	-3395	NM_016494	51255		NM_016494	ENSG00000168894	RNF181	HSPC238	ring finger protein 181	protein-coding
162014	chr3	46449751	46450050	+	0	NA	exon (NM_001199149, exon 8 of 17)	exon (NM_001199149, exon 8 of 17)	13754	NM_001199149	4057		NM_002343	ENSG00000012223	LTF	GIG12|HEL110|HLF2|LF	lactotransferrin	protein-coding
138256	chr2	203244971	203245130	+	0	NA	intron (NM_001371705, intron 1 of 9)	AluSc8|SINE|Alu	5709	NM_001371698	57404		NM_020674	ENSG00000119004	CYP20A1	CYP-M	cytochrome P450 family 20 subfamily A member 1	protein-coding
112150	chr19	5620501	5621050	+	0	NA	intron (NM_014649, intron 2 of 20)	L1MB7|LINE|L1	2001	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
2513	chr1	9701901	9703080	+	0	NA	intron (NM_001350234, intron 2 of 23)	L3|LINE|CR1	11023	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
212656	chr7	129527021	129527280	+	0	NA	Intergenic	Intergenic	24619	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
83199	chr16	23512051	23512580	+	0	NA	Intergenic	LTR32|LTR|ERVL	-1821	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
127078	chr2	37561671	37561900	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	109857	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
65734	chr14	53138901	53139350	+	0	NA	intron (NM_030637, intron 1 of 11)	(CCACAC)n|Simple_repeat|Simple_repeat	14198	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
201104	chr6	142851501	142851700	+	0	NA	intron (NM_006734, intron 1 of 9)	MIR|SINE|MIR	93576	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
135188	chr2	158391901	158392200	+	0	NA	intron (NM_001301684, intron 1 of 11)	intron (NM_001301684, intron 1 of 11)	64703	NM_001301685	130940		NM_138803	ENSG00000153237	CCDC148	-	coiled-coil domain containing 148	protein-coding
192983	chr6	28078971	28079350	+	0	NA	Intergenic	AluJb|SINE|Alu	-1122	NM_001376494	7718		NM_003447	ENSG00000197279	ZNF165	CT53|LD65|ZSCAN7	zinc finger protein 165	protein-coding
166321	chr3	112775301	112775530	+	0	NA	Intergenic	Intergenic	-26096	NR_110017	101929694		NR_110017	ENSG00000240893	LINC02042	-	long intergenic non-protein coding RNA 2042	ncRNA
78449	chr15	92838221	92838480	+	0	NA	Intergenic	Intergenic	42866	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
179071	chr4	166165871	166166030	+	0	NA	Intergenic	Intergenic	292713	NM_012464	7092		NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding
227910	chr9	94168821	94170600	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-6247	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
222355	chr8	133562301	133562500	+	0	NA	intron (NM_173344, intron 1 of 9)	AluSc|SINE|Alu	9487	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
87590	chr16	73066601	73066800	+	0	NA	Intergenic	CpG	-7679	NM_001164766	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
94913	chr17	31860801	31861000	+	0	NA	TTS (NM_018428)	TTS (NM_018428)	-1656	NM_018405	55352		NM_018405	ENSG00000172301	COPRS	C17orf79|COPR5|HSA272196|TTP1	coordinator of PRMT5 and differentiation stimulator	protein-coding
146603	chr20	50133971	50134200	+	0	NA	intron (NM_199129, intron 2 of 5)	intron (NM_199129, intron 2 of 5)	-18128	NM_022442	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
210333	chr7	99499251	99499700	+	0	NA	intron (NM_032164, intron 1 of 2)	intron (NM_032164, intron 1 of 2)	806	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
138103	chr2	202271821	202272400	+	0	NA	intron (NM_015934, intron 1 of 14)	Charlie9|DNA|hAT-Charlie	-4321	NR_003058	692110		NR_003058	ENSG00000212534	SNORD70	HBII-234|SNORD70A	small nucleolar RNA, C/D box 70	snoRNA
81148	chr16	4408421	4408680	+	0	NA	intron (NM_001351729, intron 3 of 27)	intron (NM_001351729, intron 3 of 27)	7347	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
220053	chr8	93742401	93742700	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1541	NM_001377961	389677		NM_203390	ENSG00000183808	RBM12B	MGC:33837	RNA binding motif protein 12B	protein-coding
92328	chr17	8148051	8148800	+	0	NA	intron (NM_002616, intron 8 of 22)	intron (NM_002616, intron 8 of 22)	-3354	NR_106943	102465532		NR_106943	ENSG00000284117	MIR6883	hsa-mir-6883	microRNA 6883	ncRNA
74305	chr15	58227701	58228000	+	0	NA	Intergenic	Intergenic	89469	NM_001320635	366		NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
212035	chr7	114936471	114936630	+	0	NA	intron (NM_199072, intron 2 of 4)	L3|LINE|CR1	14396	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
160159	chr3	20280371	20280530	+	0	NA	Intergenic	MER84|LTR|ERV1	-62018	NR_110814	101927829		NR_110814	ENSG00000231304	LOC101927829	-	uncharacterized LOC101927829	ncRNA
192212	chr6	18122201	18123080	+	0	NA	promoter-TSS (NM_198586)	promoter-TSS (NM_198586)	37	NM_198586	378884		NM_198586	ENSG00000187566	NHLRC1	EPM2A|EPM2B|MALIN|MELF2|bA204B7.2	NHL repeat containing E3 ubiquitin protein ligase 1	protein-coding
139291	chr2	219514171	219514930	+	0	NA	promoter-TSS (NM_018674)	promoter-TSS (NM_018674)	68	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
155307	chr22	38188671	38189180	+	0	NA	Intergenic	Intergenic	-7095	NM_001349866	8398		NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
31489	chr10	96642921	96643480	+	0	NA	intron (NM_152309, intron 8 of 16)	intron (NM_152309, intron 8 of 16)	-56188	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
35481	chr11	1507701	1508700	+	0	NA	Intergenic	Intergenic	-21421	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
41417	chr11	66051051	66051150	+	0	NA	Intergenic	Intergenic	-1264	NM_006842	10992		NM_006842	ENSG00000087365	SF3B2	CFM|Cus1|HFM|SAP145|SF3B145|SF3b1|SF3b150	splicing factor 3b subunit 2	protein-coding
7374	chr1	32872551	32873380	+	0	NA	promoter-TSS (NM_001171941)	promoter-TSS (NM_001171941)	-481	NM_001171941	252995		NM_153756	ENSG00000160097	FNDC5	FRCP2|irisin	fibronectin type III domain containing 5	protein-coding
87565	chr16	72066771	72067000	+	0	NA	intron (NM_001384360, intron 2 of 5)	HERVI-int|LTR|ERV1	3659	NM_001384360	3250		NM_020995	ENSG00000261701	HPR	A-259H10.2|HP	haptoglobin-related protein	protein-coding
183040	chr5	73298921	73299230	+	0	NA	Intergenic	CpG	-38831	NR_146627	105379033		NR_146627		LINC02230	-	long intergenic non-protein coding RNA 2230	ncRNA
9560	chr1	51622501	51622700	+	0	NA	intron (NM_148906, intron 1 of 22)	MLT1F1|LTR|ERVL-MaLR	5508	NR_036662	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
12668	chr1	109395821	109396550	+	0	NA	intron (NM_002959, intron 1 of 19)	intron (NM_002959, intron 1 of 19)	1733	NM_002959	6272		NM_002959	ENSG00000134243	SORT1	Gp95|LDLCQ6|NT3|NTR3	sortilin 1	protein-coding
4199	chr1	19445301	19446200	+	0	NA	intron (NM_001313932, intron 1 of 4)	L1MB8|LINE|L1	38545	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
216699	chr8	22188751	22188930	+	0	NA	intron (NR_033404, intron 8 of 15)	L3|LINE|CR1	23468	NR_033403	649		NM_001199	ENSG00000168487	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
146953	chr20	52312171	52312480	+	0	NA	Intergenic	Intergenic	-120340	NM_199427	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
45350	chr11	118240601	118240840	+	0	NA	intron (NM_198275, intron 1 of 5)	intron (NM_198275, intron 1 of 5)	11645	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
84876	chr16	31178571	31182080	+	0	NA	intron (NR_028388, intron 1 of 13)	CpG	186	NM_004960	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
13392	chr1	113944701	113945430	+	0	NA	intron (NM_198268, intron 2 of 15)	AluJb|SINE|Alu	-6080	NM_198269	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
85849	chr16	57019301	57019500	+	0	NA	intron (NM_001384955, intron 2 of 47)	AluSx|SINE|Alu	29843	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
81841	chr16	11583951	11584400	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	2198	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
133828	chr2	127883121	127883580	+	0	NA	intron (NM_031445, intron 2 of 7)	AluSc|SINE|Alu	1510	NM_031445	83607		NM_031445	ENSG00000144233	AMMECR1L	-	AMMECR1 like	protein-coding
184508	chr5	100897871	100898250	+	0	NA	intron (NM_175052, intron 1 of 2)	intron (NM_175052, intron 1 of 2)	5222	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
229820	chr9	125701351	125701650	+	0	NA	intron (NM_024117, intron 1 of 10)	intron (NM_024117, intron 1 of 10)	5708	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
76422	chr15	74785051	74785600	+	0	NA	intron (NM_001127190, intron 2 of 13)	intron (NM_001127190, intron 2 of 13)	-3219	NM_001354988	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
189739	chr5	176560471	176560780	+	0	NA	intron (NM_017675, intron 1 of 31)	intron (NM_017675, intron 1 of 31)	11283	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
198446	chr6	106112521	106112880	+	0	NA	Intergenic	Intergenic	13759	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
90013	chr16	89888521	89889350	+	0	NA	intron (NM_014972, intron 5 of 17)	AluSx|SINE|Alu	15343	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
59887	chr13	30696221	30696500	+	0	NA	Intergenic	Intergenic	-17118	NM_001204406	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
146704	chr20	50562601	50563000	+	0	NA	intron (NM_002827, intron 2 of 9)	intron (NM_002827, intron 2 of 9)	-22986	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
58730	chr12	132591171	132591850	+	0	NA	Intergenic	CpG	9513	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
96311	chr17	39965451	39965750	+	0	NA	intron (NM_178171, intron 1 of 11)	intron (NM_178171, intron 1 of 11)	2596	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
25025	chr10	3668371	3669830	+	0	NA	intron (NR_131187, intron 1 of 1)	intron (NR_131187, intron 1 of 1)	116109	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
12377	chr1	101258821	101259200	+	0	NA	Intergenic	Intergenic	21991	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
36212	chr11	3498371	3498680	+	0	NA	Intergenic	L1PA4|LINE|L1	-21452	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
144406	chr20	35277421	35280030	+	0	NA	promoter-TSS (NM_001355008)	promoter-TSS (NM_001355008)	-603	NM_001355008	111089941		NM_001355008		MMP24-AS1-EDEM2	-	MMP24-AS1-EDEM2 readthrough	protein-coding
213802	chr7	140926021	140926900	+	0	NA	Intergenic	AluSx|SINE|Alu	-1531	NM_001354609	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
62153	chr13	97113401	97113880	+	0	NA	Intergenic	Intergenic	-28194	NM_001382671	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
52905	chr12	57222931	57223850	+	0	NA	intron (NM_007224, intron 1 of 1)	intron (NM_007224, intron 1 of 1)	-6321	NM_001166356	6472		NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|NEDCASB|SHMT|mSHMT	serine hydroxymethyltransferase 2	protein-coding
203985	chr7	1719121	1719600	+	0	NA	intron (NM_001128636, intron 2 of 2)	intron (NM_001128636, intron 2 of 2)	22950	NR_120509	101927125		NR_120508	ENSG00000236081	ELFN1-AS1	MYCLo-2	ELFN1 antisense RNA 1	ncRNA
117709	chr19	29214371	29214750	+	0	NA	Intergenic	MIR|SINE|MIR	-1409	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
130494	chr2	85582771	85582930	+	0	NA	TTS (NM_003761)	TTS (NM_003761)	-1581	NM_006634	10791		NM_006634	ENSG00000168899	VAMP5	-	vesicle associated membrane protein 5	protein-coding
47608	chr12	5902651	5902830	+	0	NA	intron (NM_001364791, intron 3 of 24)	(GGGGA)n|Simple_repeat|Simple_repeat	42519	NM_001278596	57101		NM_020373	ENSG00000047617	ANO2	C12orf3|TMEM16B	anoctamin 2	protein-coding
194028	chr6	31831821	31832250	+	0	NA	Intergenic	Intergenic	-2881	NR_160952	50854		NM_016947	ENSG00000204387	SNHG32	C6orf48|D6S57|G8	small nucleolar RNA host gene 32	ncRNA
51933	chr12	53726101	53726620	+	0	NA	intron (NM_020898, intron 1 of 14)	intron (NM_020898, intron 1 of 14)	1092	NR_026554	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
50779	chr12	49038151	49038650	+	0	NA	exon (NM_003482, exon 35 of 55)	exon (NM_003482, exon 35 of 55)	-19624	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
105411	chr17	82781551	82782330	+	0	NA	intron (NM_005993, intron 7 of 38)	intron (NM_005993, intron 7 of 38)	29875	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
110932	chr19	2816171	2816730	+	0	NA	TTS (NM_003249)	TTS (NM_003249)	-3418	NM_001102651	115196		NM_152303	ENSG00000172006	ZNF554	-	zinc finger protein 554	protein-coding
6869	chr1	31181471	31181850	+	0	NA	3' UTR (NM_024522, exon 7 of 7)	3' UTR (NM_024522, exon 7 of 7)	58227	NM_024522	79570		NM_024522	ENSG00000084628	NKAIN1	FAM77C	sodium/potassium transporting ATPase interacting 1	protein-coding
173361	chr4	7855951	7856050	+	0	NA	intron (NM_001371091, intron 4 of 17)	intron (NM_001371091, intron 4 of 17)	16308	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
27611	chr10	32906671	32907230	+	0	NA	intron (NM_133376, intron 15 of 15)	intron (NM_133376, intron 15 of 15)	-5478	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
16345	chr1	154276371	154277150	+	0	NA	TTS (NM_001018837)	TTS (NM_001018837)	4131	NM_006118	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
232811	chr9	136717871	136718030	+	0	NA	intron (NM_152421, intron 2 of 4)	intron (NM_152421, intron 2 of 4)	5378	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
33900	chr10	124511451	124511550	+	0	NA	intron (NM_001167880, intron 5 of 5)	intron (NM_001167880, intron 5 of 5)	49677	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
159539	chr3	14508921	14509480	+	0	NA	intron (NM_001080423, intron 17 of 23)	intron (NM_001080423, intron 17 of 23)	31142	NM_001080423	80852		NM_001080423	ENSG00000144596	GRIP2	-	glutamate receptor interacting protein 2	protein-coding
53528	chr12	67025501	67025780	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	43698	NM_001379351	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
46746	chr11	129247201	129247400	+	0	NA	intron (NR_145484, intron 1 of 1)	intron (NR_145484, intron 1 of 1)	32218	NM_001378025	9743		NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
95683	chr17	38418121	38418380	+	0	NA	Intergenic	Intergenic	-10214	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
154708	chr22	36415671	36416380	+	0	NA	Intergenic	AluSp|SINE|Alu	-28058	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
189865	chr5	177296621	177297380	+	0	NA	3' UTR (NM_001365684, exon 24 of 24)	3' UTR (NM_001365684, exon 24 of 24)	6719	NM_001031677	53917		NM_130781	ENSG00000169228	RAB24	-	RAB24, member RAS oncogene family	protein-coding
8803	chr1	42936321	42937680	+	0	NA	intron (NM_006516, intron 2 of 9)	MER20|DNA|hAT-Charlie	21868	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
69679	chr14	98142551	98143050	+	0	NA	Intergenic	Intergenic	-164676	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
201565	chr6	149319571	149320400	+	0	NA	intron (NM_015093, intron 1 of 8)	intron (NM_015093, intron 1 of 8)	1685	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
232536	chr9	136338271	136338730	+	0	NA	intron (NM_015597, intron 6 of 8)	intron (NM_015597, intron 6 of 8)	10961	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
145214	chr20	38907871	38908450	+	0	NA	exon (NM_015568, exon 10 of 11)	exon (NM_015568, exon 10 of 11)	-18257	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
93270	chr17	18071051	18071730	+	0	NA	Intergenic	Intergenic	-16558	NM_001330144	1819		NM_001388	ENSG00000108591	DRG2	-	developmentally regulated GTP binding protein 2	protein-coding
92964	chr17	17088371	17088530	+	0	NA	intron (NM_015134, intron 3 of 22)	intron (NM_015134, intron 3 of 22)	45993	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
73513	chr15	43775601	43775800	+	0	NA	intron (NM_025165, intron 4 of 10)	intron (NM_025165, intron 4 of 10)	1266	NM_025165	80237		NM_025165	ENSG00000128886	ELL3	-	elongation factor for RNA polymerase II 3	protein-coding
220359	chr8	99705671	99706630	+	0	NA	intron (NM_152564, intron 36 of 61)	intron (NM_152564, intron 36 of 61)	-169289	NR_030596	100126309		NR_030596	ENSG00000216069	MIR875	MIRN875|hsa-mir-875	microRNA 875	ncRNA
114880	chr19	13881821	13884080	+	0	NA	exon (NM_001345848, exon 8 of 8)	exon (NM_001345848, exon 8 of 8)	5701	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
108863	chr18	79378001	79378200	+	0	NA	non-coding (NR_148360, exon 32 of 32)	non-coding (NR_148360, exon 32 of 32)	-17830	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
210039	chr7	94507901	94508380	+	0	NA	Intergenic	Intergenic	-1669	NM_001363426	64921		NM_022900	ENSG00000127995	CASD1	C7orf12|Cas1|NBLA04196|SOAT	CAS1 domain containing 1	protein-coding
162155	chr3	46971021	46971280	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	5351	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
36724	chr11	9203851	9204150	+	0	NA	exon (NM_015213, exon 4 of 23)	exon (NM_015213, exon 4 of 23)	61326	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
127934	chr2	46497501	46498580	+	0	NA	Intergenic	Intergenic	18475	NM_001145051	388946		NM_001145051	ENSG00000284701	TMEM247	-	transmembrane protein 247	protein-coding
125246	chr2	10406951	10407050	+	0	NA	intron (NM_001258358, intron 2 of 4)	intron (NM_001258358, intron 2 of 4)	38236	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
189601	chr5	175718821	175719080	+	0	NA	Intergenic	LTR37B|LTR|ERV1	60879	NM_001367711	3274		NM_022304	ENSG00000113749	HRH2	H2R|HH2R	histamine receptor H2	protein-coding
231864	chr9	132908571	132909150	+	0	NA	intron (NM_000368, intron 12 of 22)	Charlie1a|DNA|hAT-Charlie	-29814	NM_001371771	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
48370	chr12	9437221	9437480	+	0	NA	intron (NR_033399, intron 4 of 26)	intron (NR_033399, intron 4 of 26)	10822	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
226121	chr9	62914901	62916000	+	0	NA	Intergenic	CpG	-17363	NR_122076	403323		NM_203449		LERFS	-	lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting	ncRNA
201472	chr6	148759551	148759870	+	0	NA	intron (NM_005715, intron 1 of 7)	AluY|SINE|Alu	12680	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
105597	chr18	654971	655130	+	0	NA	intron (NM_001012716, intron 1 of 1)	AluSx1|SINE|Alu	-2603	NM_001354867	7298		NM_001071	ENSG00000176890	TYMS	DKCD|HST422|TMS|TS	thymidylate synthetase	protein-coding
235599	chrX	47634401	47635430	+	0	NA	TTS (NM_001114123)	TTS (NM_001114123)	-4610	NM_002621	5199		NM_002621	ENSG00000126759	CFP	BFD|PFC|PFD|PROPERDIN	complement factor properdin	protein-coding
74456	chr15	59659371	59659530	+	0	NA	3' UTR (NM_001320674, exon 11 of 11)	3' UTR (NM_001320674, exon 11 of 11)	-1935	NM_001320930	2958		NM_004492	ENSG00000140307	GTF2A2	HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS	general transcription factor IIA subunit 2	protein-coding
40339	chr11	63934251	63934930	+	0	NA	Intergenic	Intergenic	-4412	NM_024771	79829		NM_024771	ENSG00000110583	NAA40	NAT11|NatD|PATT1|hNatD	N-alpha-acetyltransferase 40, NatD catalytic subunit	protein-coding
49951	chr12	40144101	40144580	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-11899	NR_146526	105369734		NR_146526		LINC02471	-	long intergenic non-protein coding RNA 2471	ncRNA
224857	chr9	30066051	30066150	+	0	NA	Intergenic	Intergenic	342354	NR_046204	401497		NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
117631	chr19	23393401	23393630	+	0	NA	intron (NM_003430, intron 1 of 3)	intron (NM_003430, intron 1 of 3)	1956	NM_003430	7644		NM_003430	ENSG00000167232	ZNF91	HPF7|HTF10	zinc finger protein 91	protein-coding
237360	chrX	118824751	118825050	+	0	NA	intron (NM_173798, intron 3 of 3)	MamGyp-int|LTR|Gypsy	1076	NM_173798	170261		NM_173798	ENSG00000174460	ZCCHC12	PNMA7A|SIZN|SIZN1	zinc finger CCHC-type containing 12	protein-coding
189951	chr5	177410701	177411500	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-1536	NM_000505	2161		NM_000505	ENSG00000131187	F12	HAE3|HAEX|HAF	coagulation factor XII	protein-coding
75994	chr15	70670701	70670900	+	0	NA	intron (NM_001008224, intron 15 of 18)	intron (NM_001008224, intron 15 of 18)	31482	NM_001008224	55075		NM_018003	ENSG00000137831	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
68452	chr14	82693051	82693150	+	0	NA	intron (NR_146650, intron 4 of 5)	intron (NR_146650, intron 4 of 5)	50468	NR_146650	101928599		NR_146650	ENSG00000258743	LINC02301	-	long intergenic non-protein coding RNA 2301	ncRNA
40137	chr11	62840201	62841000	+	0	NA	promoter-TSS (NM_018093)	promoter-TSS (NM_018093)	-390	NM_001369453	54663		NM_018093	ENSG00000133316	WDR74	Nsa1	WD repeat domain 74	protein-coding
27040	chr10	26997671	26997830	+	0	NA	Intergenic	LTR14A|LTR|ERVK	-55749	NR_026795	387644		NR_026795	ENSG00000290706	FAM238C	C10orf51|LINC00202|LINC00202-1|NCRNA00202|bB27G4.1	family with sequence similarity 238 member C	ncRNA
58121	chr12	124891871	124892230	+	0	NA	Intergenic	AluY|SINE|Alu	22600	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
168356	chr3	141888601	141889150	+	0	NA	intron (NM_001679, intron 1 of 6)	THE1B|LTR|ERVL-MaLR	12232	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
203492	chr7	595451	596180	+	0	NA	intron (NM_001164759, intron 7 of 10)	MLT1J|LTR|ERVL-MaLR	-7030	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
64804	chr14	34935901	34936300	+	0	NA	intron (NR_151701, intron 2 of 4)	AluY|SINE|Alu	-3822	NR_002937	280655		NR_002937		IGBP1P1	C14orf19	IGBP1 pseudogene 1	pseudo
25395	chr10	6513171	6514080	+	0	NA	intron (NM_001282645, intron 2 of 16)	intron (NM_001282645, intron 2 of 16)	66651	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
69861	chr14	99268181	99269220	+	0	NA	intron (NM_022898, intron 1 of 2)	intron (NM_022898, intron 1 of 2)	3497	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
166545	chr3	115145621	115146300	+	0	NA	intron (NM_001348802, intron 1 of 10)	intron (NM_001348802, intron 1 of 10)	1328	NM_015642	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
75068	chr15	64278121	64278780	+	0	NA	intron (NM_001329607, intron 2 of 11)	AluSg|SINE|Alu	77723	NM_001329606	53944		NM_022048	ENSG00000169118	CSNK1G1	CK1gamma1	casein kinase 1 gamma 1	protein-coding
156098	chr22	40071051	40071350	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	26383	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
77348	chr15	82542021	82542280	+	0	NA	Intergenic	AluJo|SINE|Alu	-1693	NR_111943	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
214304	chr7	149190721	149191730	+	0	NA	Intergenic	Intergenic	-4321	NM_003575	8427		NM_003575	ENSG00000170265	ZNF282	HUB1	zinc finger protein 282	protein-coding
116018	chr19	17135301	17135900	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	43365	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
58828	chr12	132838501	132838700	+	0	NA	3' UTR (NM_001161346, exon 18 of 18)	3' UTR (NM_001161346, exon 18 of 18)	-9731	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
224351	chr9	6932001	6932200	+	0	NA	intron (NR_148677, intron 8 of 21)	intron (NR_148677, intron 8 of 21)	174127	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
200285	chr6	132793271	132793830	+	0	NA	intron (NM_052831, intron 2 of 13)	LTR64|LTR|ERV1	5087	NM_052831	116843		NM_052831	ENSG00000146409	SLC18B1	C6orf192|VPAT|dJ55C23.6	solute carrier family 18 member B1	protein-coding
216970	chr8	23061351	23061650	+	0	NA	intron (NM_147187, intron 1 of 9)	L1MB2|LINE|L1	-6729	NR_038873	286059		NR_038873	ENSG00000246130	TNFRSF10B-AS1	DR5-AS	TNFRSF10B antisense RNA 1	pseudo
217265	chr8	27329251	27330050	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	4086	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
22243	chr1	212612221	212612780	+	0	NA	intron (NM_001206484, intron 2 of 4)	intron (NM_001206484, intron 2 of 4)	-2518	NM_001206486	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
198479	chr6	106214001	106214200	+	0	NA	intron (NR_104402, intron 4 of 5)	intron (NR_104402, intron 4 of 5)	102166	NR_104402	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
68234	chr14	76955351	76957250	+	0	NA	Intergenic	Intergenic	-3338	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
69168	chr14	92603171	92604180	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	27441	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
25360	chr10	6405971	6406580	+	0	NA	intron (NM_001323267, intron 17 of 17)	intron (NM_001323267, intron 17 of 17)	55959	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
69400	chr14	94047601	94048100	+	0	NA	TTS (NM_020414).2	TTS (NM_020414).2	21510	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
15537	chr1	150532371	150533330	+	0	NA	Intergenic	L2a|LINE|L2	-16558	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
214031	chr7	143290051	143290150	+	0	NA	intron (NM_001224, intron 1 of 11)	AluSx3|SINE|Alu	512	NM_001224	835		NM_001224	ENSG00000106144	CASP2	CASP-2|ICH1|MRT80|NEDD-2|NEDD2|PPP1R57	caspase 2	protein-coding
104530	chr17	81247951	81248330	+	0	NA	intron (NM_001037984, intron 14 of 15)	AluY|SINE|Alu	8226	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
123707	chr19	55032021	55032480	+	0	NA	exon (NM_001256017, exon 3 of 7).2	exon (NM_001256017, exon 3 of 7).2	6014	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
44645	chr11	110298871	110299030	+	0	NA	Intergenic	Intergenic	-2238	NM_001260493	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
170553	chr3	186786201	186786400	+	0	NA	promoter-TSS (NR_145766)	promoter-TSS (NR_145766)	-23	NR_145766	109617006		NR_145766	ENSG00000200418	SNORA63B	-	small nucleolar RNA, H/ACA box 63B	snoRNA
78813	chr15	99564021	99564480	+	0	NA	Intergenic	Intergenic	-1167	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
30440	chr10	79065101	79065730	+	0	NA	intron (NR_024431, intron 3 of 9)	intron (NR_024431, intron 3 of 9)	2033	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
105742	chr18	2739801	2740180	+	0	NA	intron (NM_015295, intron 27 of 47)	L1PA7|LINE|L1	84264	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
229571	chr9	123302621	123303450	+	0	NA	Intergenic	Intergenic	-34449	NM_018387	55342		NM_018387	ENSG00000165209	STRBP	HEL162|ILF3L|SPNR|p74	spermatid perinuclear RNA binding protein	protein-coding
173867	chr4	24469821	24470500	+	0	NA	intron (NR_148983, intron 1 of 15)	CpG	2745	NM_001330751	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
92098	chr17	7569821	7570080	+	0	NA	intron (NM_015670, intron 7 of 10)	MIR|SINE|MIR	-2875	NM_001416	1973		NM_001416	ENSG00000161960	EIF4A1	DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I	eukaryotic translation initiation factor 4A1	protein-coding
171656	chr3	197659101	197659400	+	0	NA	Intergenic	Intergenic	15326	NR_030627	100126321		NR_030627	ENSG00000284146	MIR922	MIRN922|hsa-mir-922	microRNA 922	ncRNA
201	chr1	697301	697700	+	0	NA	Intergenic	L2c|LINE|L2	-10846	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
55230	chr12	101828151	101829200	+	0	NA	intron (NM_024312, intron 1 of 20)	AluSx3|SINE|Alu	2284	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
115486	chr19	15371851	15372150	+	0	NA	intron (NM_005858, intron 6 of 13)	intron (NM_005858, intron 6 of 13)	7787	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
93750	chr17	19883571	19883800	+	0	NA	Intergenic	L1ME3A|LINE|L1	-15749	NM_001142610	9706		NM_014683	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
49248	chr12	19442171	19442680	+	0	NA	intron (NM_001267043, intron 1 of 8)	intron (NM_001267043, intron 1 of 8)	1826	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
237736	chrX	129337551	129337650	+	0	NA	Intergenic	L1PA3|LINE|L1	185890	NM_003069	6594		NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
232317	chr9	134739071	134739430	+	0	NA	intron (NM_001278074, intron 11 of 65)	intron (NM_001278074, intron 11 of 65)	-86407	NR_138049	414316		NR_138049		COL5A1-AS1	C9orf104|bA54A22.4	COL5A1 antisense RNA 1	ncRNA
77702	chr15	85676621	85676880	+	0	NA	intron (NM_007200, intron 14 of 36)	intron (NM_007200, intron 14 of 36)	56800	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
102319	chr17	75375871	75376400	+	0	NA	intron (NM_203506, intron 2 of 4)	AluSx|SINE|Alu	29543	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
223135	chr8	143493751	143494550	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	12098	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
13022	chr1	111202471	111203100	+	0	NA	intron (NM_001271833, intron 1 of 11)	intron (NM_001271833, intron 1 of 11)	1753	NM_001271833	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
110505	chr19	2053821	2054150	+	0	NA	Intergenic	Intergenic	-2741	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
85413	chr16	50315821	50316330	+	0	NA	3' UTR (NM_001173984, exon 17 of 17)	3' UTR (NM_001173984, exon 17 of 17)	23459	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
63380	chr13	114056851	114057180	+	0	NA	intron (NM_001320821, intron 3 of 25).2	intron (NM_001320821, intron 3 of 25).2	20940	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171906	chr4	827801	828000	+	0	NA	Intergenic	Intergenic	-1771	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
19653	chr1	180236751	180236850	+	0	NA	intron (NM_033343, intron 1 of 5)	intron (NM_033343, intron 1 of 5)	6536	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
218719	chr8	58658251	58658670	+	0	NA	intron (NM_003580, intron 1 of 30)	intron (NM_003580, intron 1 of 30)	947	NM_001144772	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
155665	chr22	39024271	39025630	+	0	NA	intron (NM_001363781, intron 2 of 3)	intron (NM_001363781, intron 2 of 3)	3823	NM_152426	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
185103	chr5	119265951	119266280	+	0	NA	Intergenic	Intergenic	-2644	NM_001286815	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
234815	chrX	24147871	24148430	+	0	NA	promoter-TSS (NM_001330327)	promoter-TSS (NM_001330327)	-832	NM_001330327	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
188188	chr5	150624321	150625350	+	0	NA	intron (NM_001166209, intron 2 of 2)	(GGC)n|Simple_repeat|Simple_repeat	7191	NM_001166209	11346		NM_007286	ENSG00000171992	SYNPO	SYNPO1	synaptopodin	protein-coding
222967	chr8	143193621	143194650	+	0	NA	Intergenic	AluJr|SINE|Alu	-19083	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
232084	chr9	133576901	133577100	+	0	NA	TTS (NM_001080515)	TTS (NM_001080515)	9119	NM_001371529	642968		NM_001080515	ENSG00000196990	FAM163B	C9orf166	family with sequence similarity 163 member B	protein-coding
66697	chr14	64220501	64221100	+	0	NA	intron (NM_015180, intron 110 of 114)	intron (NM_015180, intron 110 of 114)	4846	NM_182910	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
127162	chr2	38038301	38038700	+	0	NA	intron (NM_144713, intron 10 of 10)	intron (NM_144713, intron 10 of 10)	-2159	NR_102712	101410544		NR_102712		RMDN2-AS1	-	RMDN2 antisense RNA 1	ncRNA
181118	chr5	37362851	37362950	+	0	NA	intron (NM_153485, intron 3 of 34)	intron (NM_153485, intron 3 of 34)	8206	NM_153485	9631		NM_004298	ENSG00000113569	NUP155	ATFB15|N155	nucleoporin 155	protein-coding
60316	chr13	40655751	40656050	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSx3|SINE|Alu	10741	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
125279	chr2	10477201	10477950	+	0	NA	Intergenic	Intergenic	27847	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
50259	chr12	46260801	46261300	+	0	NA	intron (NM_001278387, intron 1 of 17)	intron (NM_001278387, intron 1 of 17)	5466	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
12179	chr1	100364751	100365080	+	0	NA	intron (NM_001319210, intron 2 of 16)	intron (NM_001319210, intron 2 of 16)	12409	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
211789	chr7	107660921	107661180	+	0	NA	intron (NM_000441, intron 1 of 20)	CpG	222	NM_000441	5172		NM_000441	ENSG00000091137	SLC26A4	DFNB4|EVA|PDS|TDH2B	solute carrier family 26 member 4	protein-coding
82124	chr16	14716821	14717730	+	0	NA	intron (NM_001277324, intron 2 of 7)	intron (NM_001277324, intron 2 of 7)	5586	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
163335	chr3	50390571	50391180	+	0	NA	intron (NM_006030, intron 4 of 37)	intron (NM_006030, intron 4 of 37)	25512	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
102013	chr17	74788921	74789180	+	0	NA	intron (NM_017728, intron 4 of 9)	intron (NM_017728, intron 4 of 9)	12551	NM_017728	54868		NM_017728	ENSG00000109066	TMEM104	SLC38A12	transmembrane protein 104	protein-coding
91344	chr17	4493071	4493700	+	0	NA	Intergenic	Intergenic	-5496	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
20004	chr1	185289951	185290250	+	0	NA	intron (NM_017673, intron 18 of 18)	AluJo|SINE|Alu	27143	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
112509	chr19	6475601	6477100	+	0	NA	intron (NM_024898, intron 10 of 22)	intron (NM_024898, intron 10 of 22)	5437	NM_001290331	79958		NM_024898	ENSG00000205744	DENND1C	FAM31C	DENN domain containing 1C	protein-coding
100315	chr17	59831971	59832350	+	0	NA	intron (NM_030938, intron 10 of 11)	intron (NM_030938, intron 10 of 11)	-9106	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
86037	chr16	57543471	57543630	+	0	NA	intron (NM_153837, intron 1 of 11)	AluSx1|SINE|Alu	907	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
167963	chr3	136674951	136675250	+	0	NA	intron (NM_005862, intron 1 of 33)	intron (NM_005862, intron 1 of 33)	77278	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
110164	chr19	1648971	1649680	+	0	NA	intron (NM_003200, intron 2 of 18)	intron (NM_003200, intron 2 of 18)	3290	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
128650	chr2	61430971	61431680	+	0	NA	intron (NM_014709, intron 1 of 79)	AluJr|SINE|Alu	-13948	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
134583	chr2	144256921	144257380	+	0	NA	intron (NR_164806, intron 1 of 11)	intron (NR_164806, intron 1 of 11)	-8451	NR_148872	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
86814	chr16	67857651	67859450	+	0	NA	intron (NM_001322041, intron 1 of 4)	L2a|LINE|L2	-10857	NM_025082	80152		NM_025082	ENSG00000102901	CENPT	C16orf56|CENP-T|SSMGA	centromere protein T	protein-coding
107184	chr18	35584371	35584530	+	0	NA	intron (NM_001384444, intron 1 of 11)	intron (NM_001384444, intron 1 of 11)	2710	NM_001384445	2589		NM_020474	ENSG00000141429	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
224678	chr9	21153921	21154350	+	0	NA	Intergenic	Intergenic	-12234	NM_002177	3467		NM_002177	ENSG00000177047	IFNW1	-	interferon omega 1	protein-coding
19334	chr1	173688451	173688550	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-18649	NR_158771	339416		NM_198493	ENSG00000183831	ANKRD45	CT117	ankyrin repeat domain 45	protein-coding
145800	chr20	45418151	45418450	+	0	NA	intron (NR_047692, intron 2 of 10)	intron (NR_047692, intron 2 of 10)	2159	NR_047695	51604		NM_015937	ENSG00000124155	PIGT	CGI-06|MCAHS3|NDAP|PIG-T|PNH2	phosphatidylinositol glycan anchor biosynthesis class T	protein-coding
183454	chr5	79230571	79230730	+	0	NA	Intergenic	AluJo|SINE|Alu	-5481	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
228156	chr9	96936901	96937100	+	0	NA	intron (NM_001045477, intron 4 of 6)	intron (NM_001045477, intron 4 of 6)	8157	NM_001045477	441457		NM_001024597	ENSG00000188152	NUTM2G	FAM22G|NUTMG	NUT family member 2G	protein-coding
113232	chr19	8482351	8482850	+	0	NA	intron (NM_031203, intron 13 of 16)	intron (NM_031203, intron 13 of 16)	20040	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
114752	chr19	13281651	13281900	+	0	NA	intron (NM_023035, intron 22 of 46)	intron (NM_023035, intron 22 of 46)	131364	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
211617	chr7	105992951	105993250	+	0	NA	intron (NM_001301161, intron 3 of 17)	intron (NM_001301161, intron 3 of 17)	29836	NM_152750	222256		NM_152750	ENSG00000128536	CDHR3	CDH28	cadherin related family member 3	protein-coding
166827	chr3	122797301	122797500	+	0	NA	intron (NM_032839, intron 1 of 8)	L3|LINE|CR1	2331	NM_032839	84925		NM_032839	ENSG00000138463	SLC49A4	DIRC2|RCC4	solute carrier family 49 member 4	protein-coding
130006	chr2	74151401	74151980	+	0	NA	TTS (NM_018221)	TTS (NM_018221)	3709	NR_045636	100507171		NR_045634	ENSG00000225439	BOLA3-DT	BOLA3-AS1	BOLA3 divergent transcript	ncRNA
144094	chr20	33785471	33785830	+	0	NA	intron (NM_001282933, intron 12 of 14)	intron (NM_001282933, intron 12 of 14)	25449	NR_110623	101929746		NR_110623	ENSG00000230753	ZNF341-AS1	-	ZNF341 antisense RNA 1	ncRNA
238061	chrX	135740651	135741050	+	0	NA	Intergenic	LTR41|LTR|ERVL	27143	NM_001370149	441519		NM_001017435	ENSG00000269096	CT45A3	CT45-3|CT45-4|CT45.3|CT45.4|CT45A4	cancer/testis antigen family 45 member A3	protein-coding
150638	chr21	43398951	43401130	+	0	NA	Intergenic	Intergenic	27091	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
128900	chr2	64142901	64144850	+	0	NA	intron (NM_020651, intron 1 of 6)	CpG	545	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
204514	chr7	4791901	4792900	+	0	NA	non-coding (NR_157345, exon 17 of 17)	non-coding (NR_157345, exon 17 of 17)	-3761	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
173438	chr4	8228271	8229930	+	0	NA	intron (NM_001318480, intron 12 of 17)	intron (NM_001318480, intron 12 of 17)	29810	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
186236	chr5	134400971	134401530	+	0	NA	TTS (NM_080656)	TTS (NM_080656)	10631	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
37404	chr11	17229971	17230480	+	0	NA	Intergenic	AluSz6|SINE|Alu	-22239	NM_001321380	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
237113	chrX	104343601	104343880	+	0	NA	Intergenic	MER66C|LTR|ERV1	-88807	NM_153448	80712		NM_153448	ENSG00000123576	ESX1	ESX1L|ESXR1	ESX homeobox 1	protein-coding
156066	chr22	40003071	40003430	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	8296	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
65472	chr14	51849171	51849750	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-11152	NM_001243773	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
132287	chr2	105042221	105042480	+	0	NA	intron (NM_182640, intron 1 of 10)	MLT1F2|LTR|ERVL-MaLR	-3854	NR_110603	102724691		NR_110603	ENSG00000224509	MRPS9-AS2	-	MRPS9 antisense RNA 2	ncRNA
202289	chr6	157182801	157183230	+	0	NA	intron (NM_001371656, intron 13 of 20)	intron (NM_001371656, intron 13 of 20)	140504	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
149315	chr21	29020571	29020930	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-1379	NM_001320724	10069		NM_016940	ENSG00000156253	RWDD2B	C21orf6|GL011	RWD domain containing 2B	protein-coding
24904	chr10	1048101	1049910	+	0	NA	promoter-TSS (NM_001317957)	promoter-TSS (NM_001317957)	114	NM_004508	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
155801	chr22	39303971	39304130	+	0	NA	Intergenic	AluJo|SINE|Alu	9861	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
29961	chr10	73537321	73537800	+	0	NA	intron (NM_152586, intron 9 of 22)	intron (NM_152586, intron 9 of 22)	15780	NR_135250	159195		NM_152586	ENSG00000166348	USP54	C10orf29|bA137L10.3|bA137L10.4	ubiquitin specific peptidase 54	protein-coding
164151	chr3	56764851	56765150	+	0	NA	intron (NM_001289698, intron 3 of 10)	AluSq|SINE|Alu	10717	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
218687	chr8	58413621	58414080	+	0	NA	intron (NR_156456, intron 1 of 8)	intron (NR_156456, intron 1 of 8)	2489	NM_001077619	137886		NM_001077619	ENSG00000215114	UBXN2B	p37	UBX domain protein 2B	protein-coding
39518	chr11	61075921	61077030	+	0	NA	Intergenic	L1ME4a|LINE|L1	-17488	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
60788	chr13	45315001	45315400	+	0	NA	Intergenic	AluSz|SINE|Alu	21247	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
184621	chr5	107253601	107253800	+	0	NA	Intergenic	Intergenic	-242686	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
61086	chr13	48405651	48406300	+	0	NA	intron (NM_000321, intron 17 of 26)	L1MC4a|LINE|L1	7138	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
111162	chr19	3326701	3327200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-32680	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
198836	chr6	109236471	109236700	+	0	NA	intron (NR_152435, intron 14 of 45)	LTR1B1|LTR|ERV1	70754	NR_152435	221262		NM_173671	ENSG00000203799	CCDC162P	C6orf183|C6orf184|C6orf185|CCDC162	coiled-coil domain containing 162, pseudogene	pseudo
125122	chr2	9801021	9801830	+	0	NA	Intergenic	Intergenic	-42017	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
9221	chr1	45685471	45686700	+	0	NA	intron (NM_021639, intron 1 of 12)	CpG	448	NM_021639	60313		NM_021639	ENSG00000159592	GPBP1L1	SP192	GC-rich promoter binding protein 1 like 1	protein-coding
162613	chr3	48705301	48705500	+	0	NA	intron (NM_016291, intron 1 of 5)	AluJr|SINE|Alu	11821	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
128365	chr2	55007201	55007500	+	0	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	2922	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133565	chr2	121474301	121474500	+	0	NA	intron (NM_001142274, intron 8 of 37)	intron (NM_001142274, intron 8 of 37)	-56480	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
26064	chr10	12727001	12727400	+	0	NA	intron (NM_153498, intron 3 of 10)	intron (NM_153498, intron 3 of 10)	-1847	NR_031752	100313841		NR_031752	ENSG00000221331	MIR548Q	-	microRNA 548q	ncRNA
48895	chr12	12540401	12541000	+	0	NA	intron (NM_030640, intron 1 of 6)	intron (NM_030640, intron 1 of 6)	22163	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
161490	chr3	42518721	42519200	+	0	NA	intron (NM_004624, intron 2 of 12)	MER20B|DNA|hAT-Charlie	13646	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
48401	chr12	9652401	9652680	+	0	NA	intron (NR_046444, intron 1 of 4)	L1ME1|LINE|L1	4493	NR_002814	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
90358	chr17	1209001	1209530	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	20457	NM_001322842	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
157625	chr22	46072221	46072800	+	0	NA	Intergenic	CpG-19219	-1489	NR_148973	642648		NR_148973		LINC02939	-	long intergenic non-protein coding RNA 2939	ncRNA
198511	chr6	106515901	106516100	+	0	NA	intron (NM_001371242, intron 3 of 21)	AluJb|SINE|Alu	4145	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
27117	chr10	27744471	27745100	+	0	NA	non-coding (NR_121652, exon 1 of 2)	non-coding (NR_121652, exon 1 of 2)	170	NR_121652	101929202		NR_121652		MKX-AS1	-	MKX antisense RNA 1	ncRNA
119376	chr19	40189801	40192880	+	0	NA	promoter-TSS (NM_002446)	promoter-TSS (NM_002446)	-86	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
61273	chr13	50107401	50108000	+	0	NA	TTS (NR_002605)	TTS (NR_002605)	17841	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
161761	chr3	44763301	44763500	+	0	NA	intron (NM_020242, intron 1 of 34)	AluSc5|SINE|Alu	1606	NM_020242	56992		NM_020242	ENSG00000163808	KIF15	BRDCS2|HKLP2|KLP2|KNSL7|NY-BR-62	kinesin family member 15	protein-coding
71077	chr14	104855951	104856600	+	0	NA	Intergenic	Intergenic	-8993	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
191581	chr6	12017201	12018450	+	0	NA	intron (NM_002114, intron 2 of 8)	LTR12C|LTR|ERV1	5513	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
99281	chr17	49755971	49756130	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	8081	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
48860	chr12	12429501	12430280	+	0	NA	intron (NM_058169, intron 2 of 3)	intron (NM_058169, intron 2 of 3)	72812	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
123882	chr19	55301471	55302630	+	0	NA	intron (NM_032430, intron 8 of 18)	intron (NM_032430, intron 8 of 18)	18053	NM_032430	84446		NM_032430	ENSG00000160469	BRSK1	SAD-B|hSAD1	BR serine/threonine kinase 1	protein-coding
11779	chr1	92478651	92479650	+	0	NA	intron (NM_001127216, intron 5 of 6)	AluSz6|SINE|Alu	4804	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
15771	chr1	151170071	151170230	+	0	NA	non-coding (NR_144937, exon 7 of 7)	non-coding (NR_144937, exon 7 of 7)	4006	NR_037937	79005		NM_024041	ENSG00000163156	SCNM1	OFD19	sodium channel modifier 1	protein-coding
3419	chr1	15829771	15830130	+	0	NA	Intergenic	L2a|LINE|L2	-17757	NM_015001	23013		NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RATARS|RBM15C|SHARP	spen family transcriptional repressor	protein-coding
10933	chr1	84147921	84148630	+	0	NA	intron (NM_182948, intron 1 of 9)	L2c|LINE|L2	4004	NM_001300916	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
39382	chr11	59813821	59814530	+	0	NA	Intergenic	MER41C|LTR|ERV1	-3397	NM_017840	54948		NM_017840	ENSG00000166902	MRPL16	L16mt|MRP-L16|PNAS-111|uL16m	mitochondrial ribosomal protein L16	protein-coding
227789	chr9	93132121	93132580	+	0	NA	intron (NM_004148, intron 1 of 3)	intron (NM_004148, intron 1 of 3)	1901	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
81724	chr16	11293121	11293380	+	0	NA	Intergenic	U13|snRNA|snRNA	-11920	NM_002761	5619		NM_002761	ENSG00000175646	PRM1	CT94.1|P1	protamine 1	protein-coding
194269	chr6	32607701	32607930	+	0	NA	Intergenic	Intergenic	-17979	NM_001243965	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
227617	chr9	92762501	92763250	+	0	NA	intron (NM_001003800, intron 1 of 6)	intron (NM_001003800, intron 1 of 6)	1958	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
179893	chr5	670571	671030	+	0	NA	intron (NM_007030, intron 2 of 3)	intron (NM_007030, intron 2 of 3)	22552	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
197216	chr6	63663501	63664100	+	0	NA	intron (NM_001370348, intron 2 of 15)	MLT1J|LTR|ERVL-MaLR	17274	NM_015153	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
155350	chr22	38266871	38267730	+	0	NA	intron (NM_001195072, intron 1 of 9)	intron (NM_001195072, intron 1 of 9)	5364	NM_001195071	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
162714	chr3	49006301	49009050	+	0	NA	promoter-TSS (NM_001320547)	promoter-TSS (NM_001320547)	70	NM_001320547	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
206412	chr7	32479601	32479850	+	0	NA	Intergenic	Intergenic	10655	NR_024466	23658		NM_012322	ENSG00000106355	LSM5	YER146W	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
114556	chr19	12890271	12891980	+	0	NA	promoter-TSS (NR_102317)	promoter-TSS (NR_102317)	-4	NR_102316	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
181220	chr5	39178651	39179880	+	0	NA	intron (NM_199335, intron 2 of 17)	MIR|SINE|MIR	40298	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
216858	chr8	22616971	22617280	+	0	NA	intron (NM_021174, intron 14 of 20)	AluSx1|SINE|Alu	12083	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
165923	chr3	107421201	107421430	+	0	NA	Intergenic	Intergenic	-9615	NR_110039	101929607		NR_110039	ENSG00000273125	LINC01990	-	long intergenic non-protein coding RNA 1990	ncRNA
133472	chr2	119838221	119838480	+	0	NA	intron (NM_002830, intron 2 of 26)	LTR2752|LTR|ERV1	78428	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
21695	chr1	206729371	206730000	+	0	NA	intron (NM_032960, intron 4 of 9)	intron (NM_032960, intron 4 of 9)	40918	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
89530	chr16	89186101	89188280	+	0	NA	intron (NM_004933, intron 5 of 13)	L2b|LINE|L2	13347	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
113098	chr19	8282471	8282950	+	0	NA	Intergenic	Intergenic	25648	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
153018	chr22	23223851	23224280	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-38702	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
103864	chr17	79743051	79743400	+	0	NA	Intergenic	Intergenic	12282	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
60123	chr13	39016201	39016400	+	0	NA	intron (NM_170719, intron 9 of 11)	MIRb|SINE|MIR	21776	NM_170719	80209		NM_025138	ENSG00000120685	PROSER1	C13orf23	proline and serine rich 1	protein-coding
172383	chr4	1762871	1763130	+	0	NA	Intergenic	Intergenic	-30293	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
145351	chr20	41145221	41145500	+	0	NA	intron (NM_182811, intron 1 of 31)	intron (NM_182811, intron 1 of 31)	-7360	NR_109889	101927117		NR_109889	ENSG00000226648	PLCG1-AS1	TOP1-AS1	PLCG1 antisense RNA 1	ncRNA
159728	chr3	15797671	15798250	+	0	NA	promoter-TSS (NM_001349283)	promoter-TSS (NM_001349283)	19	NM_001349284	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
170085	chr3	182978351	182978680	+	0	NA	intron (NM_001308101, intron 1 of 6)	AluJb|SINE|Alu	2023	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
198497	chr6	106362251	106363550	+	0	NA	intron (NM_001371242, intron 1 of 21)	intron (NM_001371242, intron 1 of 21)	2183	NM_001371242	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
229419	chr9	121319951	121320500	+	0	NA	intron (NM_001353056, intron 11 of 18)	intron (NM_001353056, intron 11 of 18)	20394	NM_000177	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
8059	chr1	38870951	38871880	+	0	NA	intron (NR_037636, intron 1 of 3)	L2a|LINE|L2	1933	NM_012333	26292		NM_012333	ENSG00000214114	MYCBP	AMY-1	MYC binding protein	protein-coding
33402	chr10	118341901	118343050	+	0	NA	promoter-TSS (NM_022063)	promoter-TSS (NM_022063)	-151	NM_022063	63877		NM_022063	ENSG00000165669	FAM204A	C10orf84|bA319I23.1	family with sequence similarity 204 member A	protein-coding
21660	chr1	206691621	206691950	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	6880	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
14033	chr1	120743671	120743830	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	19811	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
15948	chr1	151832301	151832500	+	0	NA	promoter-TSS (NM_005060)	promoter-TSS (NM_005060)	-598	NM_005060	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
20192	chr1	193070951	193071650	+	0	NA	intron (NM_001042370, intron 2 of 9)	intron (NM_001042370, intron 2 of 9)	-11224	NM_001350852	51377		NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
201828	chr6	150038751	150038850	+	0	NA	Intergenic	MER41E|LTR|ERV1	-13268	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
57146	chr12	121239171	121239800	+	0	NA	3' UTR (NM_001270486, exon 16 of 16)	3' UTR (NM_001270486, exon 16 of 16)	29356	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
186062	chr5	134081471	134082030	+	0	NA	Intergenic	Intergenic	-32931	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
156232	chr22	40383101	40383780	+	0	NA	intron (NM_001350047, intron 1 of 20)	AluY|SINE|Alu	12846	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
225094	chr9	33413771	33413930	+	0	NA	Intergenic	AluJo|SINE|Alu	-11168	NM_001318156	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
35765	chr11	2155101	2155830	+	0	NA	intron (NM_001042376, intron 2 of 4)	intron (NM_001042376, intron 2 of 4)	5744	NM_001185097	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
76920	chr15	78048671	78048930	+	0	NA	intron (NM_144572, intron 2 of 12)	intron (NM_144572, intron 2 of 12)	28852	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
224800	chr9	22354321	22354580	+	0	NA	Intergenic	L1PA2|LINE|L1	-92374	NM_022160	63951		NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
145678	chr20	44987651	44988600	+	0	NA	intron (NM_006282, intron 5 of 10)	intron (NM_006282, intron 5 of 10)	21613	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
189528	chr5	173811101	173811500	+	0	NA	Intergenic	(TGGTGA)n|Simple_repeat|Simple_repeat	-20358	NR_108028	101928154		NR_108028	ENSG00000254211	LINC01485	-	long intergenic non-protein coding RNA 1485	ncRNA
199008	chr6	110999471	110999880	+	0	NA	intron (NM_032194, intron 5 of 9)	intron (NM_032194, intron 5 of 9)	17637	NM_032194	84154		NM_032194	ENSG00000197498	RPF2	BXDC1|bA397G5.4	ribosome production factor 2 homolog	protein-coding
113066	chr19	8207101	8207500	+	0	NA	Intergenic	AluSx|SINE|Alu	-2070	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
172089	chr4	1048301	1048830	+	0	NA	Intergenic	Intergenic	36101	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
81212	chr16	4506351	4507200	+	0	NA	intron (NM_001286268, intron 2 of 5).2	intron (NM_001286268, intron 2 of 5).2	10917	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
193855	chr6	31547401	31548530	+	0	NA	intron (NM_005007, intron 1 of 3)	intron (NM_005007, intron 1 of 3)	357	NM_005007	4795		NM_005007	ENSG00000204498	NFKBIL1	IKBL|NFKBIL	NFKB inhibitor like 1	protein-coding
215225	chr7	156638721	156638980	+	0	NA	intron (NR_026865, intron 1 of 3)	intron (NR_026865, intron 1 of 3)	1685	NR_026865	100506380		NM_032625	ENSG00000182648	RNF32-DT	C7orf13|LINC01006|MY040	RNF32 divergent transcript	ncRNA
35790	chr11	2183371	2183530	+	0	NA	Intergenic	L1MB3|LINE|L1	10387	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
5662	chr1	26313271	26313630	+	0	NA	intron (NM_145345, intron 1 of 14)	L2a|LINE|L2	-4508	NM_001803	1043		NM_001803	ENSG00000169442	CD52	CDW52|EDDM5|HE5	CD52 molecule	protein-coding
12867	chr1	110136751	110137200	+	0	NA	Intergenic	Intergenic	-13519	NM_001010898	388662		NM_001010898	ENSG00000197106	SLC6A17	MRT48|NTT4	solute carrier family 6 member 17	protein-coding
23550	chr1	229272771	229272930	+	0	NA	intron (NM_001271998, intron 1 of 5)	intron (NM_001271998, intron 1 of 5)	-1696	NR_149313	105373159		NR_149312	ENSG00000177788	RAB4A-AS1	-	RAB4A antisense RNA 1	ncRNA
133104	chr2	112634221	112635650	+	0	NA	Intergenic	Intergenic	9245	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
149426	chr21	31326471	31327430	+	0	NA	intron (NM_001353694, intron 2 of 27)	intron (NM_001353694, intron 2 of 27)	17404	NM_001353694	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
221265	chr8	122791071	122791430	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	9595	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
86489	chr16	67013501	67014930	+	0	NA	Intergenic	CpG	13676	NM_001190201	283848		NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
90196	chr17	413171	413500	+	0	NA	non-coding (NR_136407, exon 2 of 3)	non-coding (NR_136407, exon 2 of 3)	688	NR_136407	105371430		NR_136407	ENSG00000241525	LOC105371430	-	uncharacterized LOC105371430	ncRNA
59688	chr13	29529571	29530330	+	0	NA	intron (NM_003045, intron 5 of 12)	intron (NM_003045, intron 5 of 12)	-42200	NR_046378	100874107		NR_046378		MTUS2-AS1	-	MTUS2 antisense RNA 1	ncRNA
105546	chr17	83199801	83201230	+	0	NA	Intergenic	Intergenic	-26382	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
36841	chr11	10299401	10299600	+	0	NA	Intergenic	Intergenic	-5293	NM_030962	81846		NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
84366	chr16	30236301	30236930	+	0	NA	intron (NM_001321892, intron 3 of 8)	MER30|DNA|hAT-Charlie	9240	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
202853	chr6	159782251	159782550	+	0	NA	intron (NM_030752, intron 7 of 11)	intron (NM_030752, intron 7 of 11)	-2019	NR_002960	677806		NR_002960	ENSG00000207392	SNORA20	ACA20	small nucleolar RNA, H/ACA box 20	snoRNA
18751	chr1	167491521	167493380	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	26079	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
70299	chr14	101784271	101784430	+	0	NA	intron (NM_001352915, intron 2 of 14)	THE1D|LTR|ERVL-MaLR	21980	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
131985	chr2	100320901	100321680	+	0	NA	intron (NM_001371783, intron 1 of 12)	intron (NM_001371783, intron 1 of 12)	1211	NM_001371783	164832		NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
193961	chr6	31689021	31690330	+	0	NA	exon (NM_021160, exon 12 of 20).3	exon (NM_021160, exon 12 of 20).3	-9302	NM_025262	80741		NM_025262	ENSG00000204428	LY6G5C	C6orf20|G5C|LY6G5CA|LY6G5CB|NG33	lymphocyte antigen 6 family member G5C	protein-coding
54285	chr12	89243801	89244000	+	0	NA	Intergenic	L2c|LINE|L2	108601	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
77506	chr15	84653321	84656400	+	0	NA	promoter-TSS (NR_130947)	promoter-TSS (NR_130947)	-517	NR_130946	84942		NM_032856	ENSG00000177082	WDR73	GAMOS|GAMOS1|HSPC264	WD repeat domain 73	protein-coding
195190	chr6	36055071	36055230	+	0	NA	intron (NM_139014, intron 2 of 10)	MamSINE1|SINE|tRNA-RTE	27342	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
73704	chr15	45117971	45118550	+	0	NA	3' UTR (NM_001276268, exon 6 of 6)	3' UTR (NM_001276268, exon 6 of 6)	3934	NM_207581	405753		NM_207581	ENSG00000140274	DUOXA2	SIMNIPHOM|TDH5	dual oxidase maturation factor 2	protein-coding
47807	chr12	6580551	6580650	+	0	NA	TTS (NR_003012)	TTS (NR_003012)	1009	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
87079	chr16	68434701	68434900	+	0	NA	intron (NM_018667, intron 1 of 8)	intron (NM_018667, intron 1 of 8)	13708	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
95644	chr17	37847951	37848050	+	0	NA	intron (NR_024178, intron 5 of 6)	L1MA10|LINE|L1	36743	NR_024178	284100		NM_001129906	ENSG00000290810	YWHAEP7	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7	pseudo
237532	chrX	120319221	120319550	+	0	NA	Intergenic	Intergenic	-7849	NM_017938	55026		NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
125297	chr2	10545451	10545730	+	0	NA	Intergenic	L1MB3|LINE|L1	95862	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
17024	chr1	156057751	156058600	+	0	NA	intron (NM_014017, intron 3 of 3)	intron (NM_014017, intron 3 of 3)	-2985	NM_020387	57111		NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
138915	chr2	218130421	218131280	+	0	NA	intron (NM_001168298, intron 3 of 3)	intron (NM_001168298, intron 3 of 3)	4822	NM_001557	3579		NM_001557	ENSG00000180871	CXCR2	CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB|WHIMS2	C-X-C motif chemokine receptor 2	protein-coding
134055	chr2	131394621	131394880	+	0	NA	Intergenic	CpG	-8151	NR_036499	389043		NR_036499		LINC01120	-	long intergenic non-protein coding RNA 1120	ncRNA
28418	chr10	47986751	47986850	+	0	NA	Intergenic	Intergenic	12991	NM_001137548	644054		NM_001137548	ENSG00000276430	FAM25C	bA164N7.4	family with sequence similarity 25 member C	protein-coding
135453	chr2	161241601	161242250	+	0	NA	intron (NR_110593, intron 3 of 3)	intron (NR_110593, intron 3 of 3)	-2814	NR_110164	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
100426	chr17	60665721	60666180	+	0	NA	3' UTR (NM_003620, exon 6 of 6)	3' UTR (NM_003620, exon 6 of 6)	-11901	NM_001320470	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
177187	chr4	108169901	108170130	+	0	NA	intron (NR_029374, intron 1 of 2)	intron (NR_029374, intron 1 of 2)	-1059	NM_001130714	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
43829	chr11	86807171	86807530	+	0	NA	intron (NR_120591, intron 1 of 4)	intron (NR_120591, intron 1 of 4)	6808	NM_001293179	11098		NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	serine protease 23	protein-coding
36148	chr11	3137771	3138650	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	27100	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
109455	chr19	771271	771800	+	0	NA	Intergenic	L2|LINE|L2	20423	NR_135168	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
122198	chr19	48953451	48953550	+	0	NA	Intergenic	L1ME3|LINE|L1	-1360	NM_001291430	581		NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
29802	chr10	72295821	72296380	+	0	NA	Intergenic	Intergenic	22176	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
171735	chr3	197957501	197958500	+	0	NA	intron (NM_032263, intron 2 of 11)	intron (NM_032263, intron 2 of 11)	1991	NM_032263	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
18271	chr1	161103551	161104300	+	0	NA	intron (NM_012394, intron 1 of 3)	MIRc|SINE|MIR	5564	NM_001007255	126823		NM_152366	ENSG00000162755	KLHDC9	KARCA1	kelch domain containing 9	protein-coding
186178	chr5	134204571	134204930	+	0	NA	intron (NR_149151, intron 2 of 6)	AluJb|SINE|Alu	20804	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
66898	chr14	65222401	65222830	+	0	NA	promoter-TSS (NR_103769)	promoter-TSS (NR_103769)	-268	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
96619	chr17	40559071	40559530	+	0	NA	intron (NM_001838, intron 1 of 2)	intron (NM_001838, intron 1 of 2)	1094	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
213787	chr7	140870671	140871030	+	0	NA	intron (NM_001374244, intron 1 of 18)	intron (NM_001374244, intron 1 of 18)	53418	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
191306	chr6	6697671	6697830	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-74924	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
237905	chrX	131792351	131792700	+	0	NA	intron (NR_026975, intron 5 of 12)	intron (NR_026975, intron 5 of 12)	38118	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
230862	chr9	129139901	129142150	+	0	NA	intron (NM_001271832, intron 7 of 8)	intron (NM_001271832, intron 7 of 8)	29337	NM_001193397	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
46054	chr11	122723501	122723900	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	67978	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
220585	chr8	100852501	100852900	+	0	NA	Intergenic	L1PA4|LINE|L1	97871	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
104362	chr17	80999571	81000330	+	0	NA	3' UTR (NM_024591, exon 8 of 8)	3' UTR (NM_024591, exon 8 of 8)	8109	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
3744	chr1	16640721	16641450	+	0	NA	Intergenic	AluY|SINE|Alu	-4489	NR_027504	11209		NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
200474	chr6	135179821	135180800	+	0	NA	promoter-TSS (NM_001161659)	promoter-TSS (NM_001161659)	-998	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
123750	chr19	55077421	55077900	+	0	NA	intron (NM_133180, intron 2 of 19)	AluSc|SINE|Alu	1791	NM_133180	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
31814	chr10	99234051	99234350	+	0	NA	intron (NM_001166244, intron 1 of 10)	CpG	1652	NM_021828	60495		NM_021828	ENSG00000172987	HPSE2	HPA2|HPR2|UFS|UFS1	heparanase 2 (inactive)	protein-coding
182625	chr5	66821851	66822150	+	0	NA	intron (NM_198828, intron 3 of 5)	intron (NM_198828, intron 3 of 5)	-6773	NM_015183	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
46542	chr11	128472051	128472830	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	49870	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
225406	chr9	35052771	35053300	+	0	NA	Intergenic	L1PB1|LINE|L1	10795	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
194137	chr6	31976721	31977130	+	0	NA	intron (NM_004197, intron 2 of 6)	SVA_D|Retroposon|SVA	4562	NM_004197	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
65970	chr14	56422701	56422900	+	0	NA	Intergenic	Intergenic	-91531	NR_135241	101927690		NR_135241	ENSG00000258803	LOC101927690	-	uncharacterized LOC101927690	ncRNA
124230	chr19	57317651	57317950	+	0	NA	Intergenic	Intergenic	-2672	NM_213598	125919		NM_213598	ENSG00000178229	ZNF543	-	zinc finger protein 543	protein-coding
2494	chr1	9683921	9684850	+	0	NA	intron (NR_126368, intron 1 of 1)	AluSx1|SINE|Alu	3189	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
232732	chr9	136623251	136623550	+	0	NA	Intergenic	Intergenic	-6219	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
237655	chrX	124266651	124267550	+	0	NA	Intergenic	Intergenic	-65560	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
28850	chr10	62614451	62614990	+	0	NA	Intergenic	MIR3|SINE|MIR	-190000	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
66191	chr14	60978671	60979400	+	0	NA	intron (NM_001350253, intron 2 of 4)	intron (NM_001350253, intron 2 of 4)	2044	NM_020810	57570		NM_020810	ENSG00000126814	TRMT5	COXPD26|KIAA1393|PNSED|TRM5	tRNA methyltransferase 5	protein-coding
111934	chr19	4756371	4757250	+	0	NA	Intergenic	L1MB3|LINE|L1	-12295	NR_027148	284424		NM_174947	ENSG00000176840	MIR7-3HG	C19orf30|Huh7|LINC00306|NCRNA00306|PGSF1|uc002mbe.2	MIR7-3 host gene	ncRNA
140455	chr2	233163401	233163680	+	0	NA	intron (NM_001017915, intron 11 of 26).2	intron (NM_001017915, intron 11 of 26).2	-88031	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
99806	chr17	51428971	51429430	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-6227	NR_146897	105371828		NR_146897	ENSG00000267452	LINC02073	-	long intergenic non-protein coding RNA 2073	ncRNA
31037	chr10	88888771	88888930	+	0	NA	intron (NM_020799, intron 1 of 10)	L1ME4a|LINE|L1	8605	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
209271	chr7	75912651	75913400	+	0	NA	Intergenic	Intergenic	-2130	NM_001382658	5447		NM_000941	ENSG00000127948	POR	CPR|CYPOR|P450R	cytochrome p450 oxidoreductase	protein-coding
119349	chr19	39979751	39980400	+	0	NA	exon (NM_153001, exon 8 of 11)	exon (NM_153001, exon 8 of 11)	8910	NM_006503	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
216677	chr8	22154251	22154580	+	0	NA	intron (NM_139278, intron 3 of 7)	intron (NM_139278, intron 3 of 7)	2391	NM_139278	203190		NM_139278	ENSG00000168481	LGI3	IDDMDS|LGIL4	leucine rich repeat LGI family member 3	protein-coding
58974	chr13	19861071	19861650	+	0	NA	intron (NM_001039649, intron 2 of 4)	AluJb|SINE|Alu	2276	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
121631	chr19	47445721	47446430	+	0	NA	intron (NM_015063, intron 4 of 9)	intron (NM_015063, intron 4 of 9)	-23842	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
213619	chr7	139499901	139500500	+	0	NA	Intergenic	Intergenic	-16527	NM_198508	346689		NM_198508	ENSG00000188883	KLRG2	CLEC15B	killer cell lectin like receptor G2	protein-coding
120813	chr19	45479811	45480580	+	0	NA	Intergenic	AluY|SINE|Alu	12199	NM_006732	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
235320	chrX	43106021	43106280	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-70844	NR_110387	101927501		NR_110387	ENSG00000224294	PINCR	-	p53-induced noncoding RNA	ncRNA
9130	chr1	45393521	45394200	+	0	NA	intron (NM_007170, intron 3 of 10)	intron (NM_007170, intron 3 of 10)	-53390	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
222948	chr8	143095221	143095480	+	0	NA	Intergenic	Intergenic	14720	NM_001368160	101928108		NM_001368160	ENSG00000261667	LY6L	-	lymphocyte antigen 6 family member L	protein-coding
2004	chr1	6743011	6744380	+	0	NA	Intergenic	Intergenic	16168	NR_104621	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
48529	chr12	10190601	10191100	+	0	NA	3' UTR (NM_001384894, exon 8 of 8)	3' UTR (NM_001384894, exon 8 of 8)	11818	NM_001384897	120939		NM_153022	ENSG00000165685	TMEM52B	C12orf59	transmembrane protein 52B	protein-coding
124384	chr19	58389201	58389400	+	0	NA	intron (NM_001009, intron 2 of 5)	AluJo|SINE|Alu	2031	NM_001009	6193		NM_001009	ENSG00000083845	RPS5	S5|uS7	ribosomal protein S5	protein-coding
22284	chr1	212769551	212769950	+	0	NA	intron (NM_001042549, intron 4 of 6)	L1MA3|LINE|L1	22027	NM_001297739	25936		NM_015471	ENSG00000117697	NSL1	C1orf48|DC8|MIS14	NSL1 component of MIS12 kinetochore complex	protein-coding
41650	chr11	66541371	66542830	+	0	NA	intron (NM_207340, intron 2 of 2)	intron (NM_207340, intron 2 of 2)	3948	NM_001348571	254359		NM_207340	ENSG00000174165	ZDHHC24	-	zinc finger DHHC-type containing 24	protein-coding
185915	chr5	132825501	132826500	+	0	NA	exon (NM_001172700, exon 4 of 10)	exon (NM_001172700, exon 4 of 10)	310	NM_133456	134549		NM_133456	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
188453	chr5	154480001	154480500	+	0	NA	Intergenic	Intergenic	-2023	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
82748	chr16	21412201	21412700	+	0	NA	intron (NM_130464, intron 3 of 12)	intron (NM_130464, intron 3 of 12)	12928	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
38290	chr11	43360401	43360630	+	0	NA	intron (NM_001376526, intron 1 of 22)	intron (NM_001376526, intron 1 of 22)	1595	NR_164824	55761		NM_018259	ENSG00000052841	TTC17	-	tetratricopeptide repeat domain 17	protein-coding
206741	chr7	36658071	36658300	+	0	NA	intron (NM_001177506, intron 4 of 21)	intron (NM_001177506, intron 4 of 21)	-58065	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
142459	chr20	4023971	4024150	+	0	NA	Intergenic	Intergenic	-8502	NM_001134337	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
119043	chr19	39033471	39034000	+	0	NA	Intergenic	MER65C|LTR|ERV1	-1186	NM_178820	126433		NM_178820	ENSG00000161243	FBXO27	FBG5|Fbx27	F-box protein 27	protein-coding
128957	chr2	64626451	64626950	+	0	NA	Intergenic	AluSg|SINE|Alu	19388	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
167514	chr3	129264721	129264980	+	0	NA	intron (NM_016128, intron 13 of 23)	AluSx1|SINE|Alu	-7296	NR_106884	102465496		NR_106884	ENSG00000278658	MIR6826	hsa-mir-6826	microRNA 6826	ncRNA
124017	chr19	55474971	55475330	+	0	NA	Intergenic	Intergenic	-1467	NM_033113	89887		NM_033113	ENSG00000197483	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
55954	chr12	110010951	110011630	+	0	NA	intron (NM_033121, intron 1 of 14)	intron (NM_033121, intron 1 of 14)	11860	NM_033121	88455		NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
30942	chr10	87436121	87436400	+	0	NA	Intergenic	Intergenic	-28560	NR_046091	728218		NR_046091	ENSG00000228055	FAM245A	LINC00864	family with sequence similarity 245 member A	ncRNA
207151	chr7	43582251	43583400	+	0	NA	promoter-TSS (NM_004760)	promoter-TSS (NM_004760)	-283	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
111078	chr19	3171921	3172400	+	0	NA	Intergenic	Intergenic	-6609	NM_003775	8698		NM_003775	ENSG00000125910	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
211910	chr7	112390151	112390450	+	0	NA	Intergenic	MIR|SINE|MIR	-32844	NM_001197080	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
54496	chr12	92088301	92088900	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	53113	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
43595	chr11	83159821	83161150	+	0	NA	intron (NM_015885, intron 1 of 15)	intron (NM_015885, intron 1 of 15)	3354	NM_001346415	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
145857	chr20	45907671	45908030	+	0	NA	exon (NM_182676, exon 5 of 15)	exon (NM_182676, exon 5 of 15)	3144	NM_001242921	5360		NM_006227	ENSG00000100979	PLTP	BPIFE|HDLCQ9	phospholipid transfer protein	protein-coding
38265	chr11	36747051	36747440	+	0	NA	Intergenic	Intergenic	-148966	NM_001243786	5897		NM_000536	ENSG00000175097	RAG2	RAG-2	recombination activating 2	protein-coding
17394	chr1	156620321	156620580	+	0	NA	intron (NM_021817, intron 2 of 6)	MIR|SINE|MIR	1035	NM_021817	60484		NM_021817	ENSG00000132702	HAPLN2	BRAL1	hyaluronan and proteoglycan link protein 2	protein-coding
173848	chr4	22237221	22237480	+	0	NA	Intergenic	Intergenic	102316	NR_037877	100505912		NR_037877		LOC100505912	-	uncharacterized LOC100505912	ncRNA
80154	chr16	2097721	2098350	+	0	NA	intron (NM_001009944, intron 30 of 45)	intron (NM_001009944, intron 30 of 45)	6599	NR_135175	105371049		NR_135175	ENSG00000259933	PKD1-AS1	-	PKD1 antisense RNA 1	ncRNA
52229	chr12	54392971	54393430	+	0	NA	intron (NR_120487, intron 1 of 3)	intron (NR_120487, intron 1 of 3)	-1902	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
196489	chr6	43629901	43630730	+	0	NA	intron (NM_001003690, intron 1 of 3)	intron (NM_001003690, intron 1 of 3)	773	NM_001003690	9587		NM_014628	ENSG00000124688	MAD2L1BP	CMT2|p31comet	MAD2L1 binding protein	protein-coding
105579	chr18	156721	156980	+	0	NA	Intergenic	AluJb|SINE|Alu	-1707	NM_001037334	9097		NM_005151	ENSG00000101557	USP14	TGT|Ubp6	ubiquitin specific peptidase 14	protein-coding
235577	chrX	47523151	47524000	+	0	NA	Intergenic	CpG	-37525	NM_001256196	369		NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
204963	chr7	6372571	6372730	+	0	NA	Intergenic	Intergenic	-1877	NM_006908	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
128607	chr2	61055651	61055950	+	0	NA	Intergenic	Intergenic	-10070	NM_001330432	84542		NM_032506	ENSG00000162929	SANBR	KIAA1841	SANT and BTB domain regulator of CSR	protein-coding
190261	chr5	179101551	179101650	+	0	NA	Intergenic	L1PA3|LINE|L1	41227	NM_014594	30832		NM_014594	ENSG00000177932	ZNF354C	KID3	zinc finger protein 354C	protein-coding
131492	chr2	96526221	96526600	+	0	NA	Intergenic	Intergenic	5896	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
218980	chr8	61714051	61715480	+	0	NA	promoter-TSS (NM_004318)	promoter-TSS (NM_004318)	-23	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
40631	chr11	64715951	64716050	+	0	NA	intron (NM_015080, intron 1 of 22)	intron (NM_015080, intron 1 of 22)	7197	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
43560	chr11	82997101	82997500	+	0	NA	exon (NM_001286061, exon 2 of 5)	exon (NM_001286061, exon 2 of 5)	36974	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
58627	chr12	132498901	132499500	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	-6206	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
200102	chr6	130194321	130194950	+	0	NA	intron (NM_001258275, intron 7 of 13)	HERVH-int|LTR|ERV1	21250	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
222660	chr8	141182351	141182850	+	0	NA	intron (NM_014957, intron 17 of 22)	intron (NM_014957, intron 17 of 22)	45974	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
82971	chr16	21949101	21949500	+	0	NA	Intergenic	MER4A|LTR|ERV1	-4061	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
34042	chr10	124734401	124735550	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	9403	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
122166	chr19	48894621	48894880	+	0	NA	intron (NM_003323, intron 6 of 12)	MER2|DNA|TcMar-Tigger	3994	NM_003323	7288		NM_003323	ENSG00000104804	TULP2	CT65|TUBL2	TUB like protein 2	protein-coding
49112	chr12	14770701	14771400	+	0	NA	promoter-TSS (NM_175054)	promoter-TSS (NM_175054)	81	NM_175054	121504		NM_175054	ENSG00000197837	H4C16	H4-16|H4/p|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST4H4	H4 histone 16	protein-coding
25870	chr10	11250171	11250700	+	0	NA	intron (NM_001326330, intron 4 of 12)	intron (NM_001326330, intron 4 of 12)	85405	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
141141	chr2	239222401	239223200	+	0	NA	intron (NM_006037, intron 3 of 26)	intron (NM_006037, intron 3 of 26)	-27343	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
199464	chr6	117679371	117679750	+	0	NA	intron (NM_138459, intron 1 of 4)	MLT1H1|LTR|ERVL-MaLR	4091	NM_138459	116150		NM_138459	ENSG00000153989	NUS1	C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding
82302	chr16	15640121	15640380	+	0	NA	intron (NM_001184998, intron 1 of 26).2	intron (NM_001184998, intron 1 of 26).2	2904	NM_001184999	9665		NM_014647	ENSG00000166783	MARF1	KIAA0430|LKAP|LMKB|PPP1R34	meiosis regulator and mRNA stability factor 1	protein-coding
6484	chr1	28367651	28367750	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2040	NM_001350161	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
27319	chr10	30505251	30505550	+	0	NA	Intergenic	AluSz|SINE|Alu	70754	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
175594	chr4	75674921	75675230	+	0	NA	Intergenic	MIR|SINE|MIR	-1592	NM_203504	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
132051	chr2	101127321	101127600	+	0	NA	intron (NM_001330348, intron 1 of 19)	intron (NM_001330348, intron 1 of 19)	23922	NM_001330348	11138		NM_007063	ENSG00000204634	TBC1D8	AD3|GRAMD8|HBLP1|TBC1D8A|VRP	TBC1 domain family member 8	protein-coding
133	chr1	509451	510330	+	0	NA	Intergenic	L2a|LINE|L2	-14445	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
68950	chr14	91399871	91401200	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	17285	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
15251	chr1	149620551	149620850	+	0	NA	intron (NR_111950, intron 1 of 8)	intron (NR_111950, intron 1 of 8)	13688	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
34554	chr10	133124071	133124230	+	0	NA	intron (NM_001291085, intron 2 of 3)	intron (NM_001291085, intron 2 of 3)	21904	NM_001291085	84435		NM_032422	ENSG00000197177	ADGRA1	GPR123	adhesion G protein-coupled receptor A1	protein-coding
11259	chr1	89035101	89035300	+	0	NA	Intergenic	Intergenic	-12334	NM_001319180	2635		NM_018284	ENSG00000117226	GBP3	-	guanylate binding protein 3	protein-coding
171869	chr4	759501	760380	+	0	NA	intron (NM_001317836, intron 9 of 11)	CpG	21908	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
163470	chr3	50625251	50625550	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	8249	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
69902	chr14	99483401	99484000	+	0	NA	intron (NM_001099402, intron 1 of 10)	L3|LINE|CR1	2291	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
222589	chr8	140944271	140944530	+	0	NA	intron (NM_001352699, intron 1 of 35)	intron (NM_001352699, intron 1 of 35)	56604	NM_001352710	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
91383	chr17	4566621	4567400	+	0	NA	Intergenic	LTR55|LTR|ERVL?	-6433	NM_001122890	124975		NM_153338	ENSG00000167741	GGT6	-	gamma-glutamyltransferase 6	protein-coding
224214	chr9	5586301	5587180	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-42367	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
180629	chr5	16666601	16667030	+	0	NA	intron (NM_012334, intron 40 of 40)	intron (NM_012334, intron 40 of 40)	-49757	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
83787	chr16	28749971	28751200	+	0	NA	Intergenic	CpG	-1850	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
151140	chr21	44905321	44905580	+	0	NA	intron (NM_001127491, intron 4 of 15)	intron (NM_001127491, intron 4 of 15)	15449	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
69371	chr14	94023151	94023680	+	0	NA	Intergenic	Intergenic	-2925	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
26998	chr10	26799321	26799630	+	0	NA	intron (NR_145410, intron 2 of 11)	intron (NR_145410, intron 2 of 11)	61483	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
61753	chr13	74247371	74247530	+	0	NA	intron (NR_144451, intron 1 of 1)	intron (NR_144451, intron 1 of 1)	16006	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
121709	chr19	47598471	47599030	+	0	NA	Intergenic	Intergenic	-9446	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
219324	chr8	70161701	70161900	+	0	NA	intron (NM_001321713, intron 8 of 21)	intron (NM_001321713, intron 8 of 21)	-90548	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
9215	chr1	45645201	45645400	+	0	NA	TTS (NR_026768)	TTS (NR_026768)	1385	NR_026768	728963		NR_026768		RPS15AP10	RPS15A_4_42	ribosomal protein S15a pseudogene 10	pseudo
103136	chr17	77396201	77396400	+	0	NA	TTS (NR_036200)	TTS (NR_036200)	754	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
212251	chr7	121440851	121441900	+	0	NA	Intergenic	Intergenic	-45007	NM_001040020	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
43492	chr11	78416371	78417300	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	985	NM_080491	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
147741	chr20	62402551	62403050	+	0	NA	intron (NM_031215, intron 1 of 9)	intron (NM_031215, intron 1 of 9)	4483	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
222204	chr8	133054071	133054230	+	0	NA	promoter-TSS (NR_146773)	promoter-TSS (NR_146773)	-809	NR_146773	100302522		NR_146773	ENSG00000287736	PTCSC1	NCRNA00197|PTCSC	papillary thyroid carcinoma susceptibility candidate 1	ncRNA
140329	chr2	232531551	232531650	+	0	NA	exon (NM_001311196, exon 9 of 12)	exon (NM_001311196, exon 9 of 12)	5440	NM_000751	1144		NM_000751	ENSG00000135902	CHRND	ACHRD|CMS2A|CMS3A|CMS3B|CMS3C|FCCMS|SCCMS	cholinergic receptor nicotinic delta subunit	protein-coding
89610	chr16	89299371	89300550	+	0	NA	intron (NR_045839, intron 5 of 9)	intron (NR_045839, intron 5 of 9)	3832	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
112562	chr19	6590301	6591330	+	0	NA	intron (NM_001330332, intron 1 of 3)	CpG	335	NM_001330332	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
228060	chr9	96061201	96061600	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-4439	NR_033838	158435		NM_138497		LOC158435	-	uncharacterized LOC158435	ncRNA
203630	chr7	962471	962630	+	0	NA	Intergenic	Intergenic	-7143	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
187273	chr5	141538601	141539000	+	0	NA	intron (NM_005219, intron 17 of 27)	AluSg4|SINE|Alu	-19511	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
15450	chr1	150320921	150322280	+	0	NA	promoter-TSS (NM_004698)	promoter-TSS (NM_004698)	67	NM_004698	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
215574	chr7	158825771	158826200	+	0	NA	intron (NM_020728, intron 1 of 21)	FLAM_C|SINE|Alu	3524	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
146151	chr20	48706671	48707280	+	0	NA	intron (NM_020820, intron 6 of 39)	LTR67B|LTR|ERVL	121024	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138651	chr2	212686321	212686680	+	0	NA	Intergenic	Intergenic	-108831	NR_131942	102725079		NR_131941	ENSG00000234308	LINC01878	-	long intergenic non-protein coding RNA 1878	ncRNA
49772	chr12	31828101	31828380	+	0	NA	Intergenic	MER68|LTR|ERVL	-35942	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
160116	chr3	19952251	19952350	+	0	NA	intron (NM_001292048, intron 2 of 5)	intron (NM_001292048, intron 2 of 5)	5203	NM_004162	5868		NM_004162	ENSG00000144566	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
11317	chr1	89358121	89358700	+	0	NA	Intergenic	(TCTCTC)n|Simple_repeat|Simple_repeat	-5467	NM_001320257	163351		NM_198460	ENSG00000183347	GBP6	-	guanylate binding protein family member 6	protein-coding
83464	chr16	27363971	27364880	+	0	NA	3' UTR (NM_001257407, exon 11 of 11)	3' UTR (NM_001257407, exon 11 of 11)	-37749	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
156150	chr22	40181201	40182000	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	3675	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
27257	chr10	29688971	29689430	+	0	NA	intron (NM_001323599, intron 1 of 38)	MIR3|SINE|MIR	46601	NM_003174	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
6001	chr1	27000821	27001280	+	0	NA	TTS (NM_001013642)	TTS (NM_001013642)	7358	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
53024	chr12	57583221	57584030	+	0	NA	intron (NM_004984, intron 28 of 28)	intron (NM_004984, intron 28 of 28)	-7567	NM_001146259	79837		NM_024779	ENSG00000166908	PIP4K2C	PIP5K2C	phosphatidylinositol-5-phosphate 4-kinase type 2 gamma	protein-coding
127109	chr2	37640651	37641250	+	0	NA	TTS (NM_001270438)	TTS (NM_001270438)	30692	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
166094	chr3	109803301	109803800	+	0	NA	Intergenic	Intergenic	200722	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
30812	chr10	85548171	85548330	+	0	NA	Intergenic	L1ME1|LINE|L1	-29481	NR_038986	100507470		NR_038986	ENSG00000234942	GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
138901	chr2	218032421	218032880	+	0	NA	Intergenic	Intergenic	-2284	NR_034176	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
157740	chr22	46612451	46613380	+	0	NA	intron (NM_001366660, intron 1 of 17)	intron (NM_001366660, intron 1 of 17)	-7471	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
144827	chr20	36840201	36840400	+	0	NA	intron (NM_080627, intron 1 of 14)	AluY|SINE|Alu	19573	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
230966	chr9	129456951	129457250	+	0	NA	Intergenic	(ATGG)n|Simple_repeat|Simple_repeat	-31560	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
86983	chr16	68212751	68213230	+	0	NA	intron (NM_173165, intron 9 of 9)	AluY|SINE|Alu	20509	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
192181	chr6	17674901	17675380	+	0	NA	intron (NM_001278209, intron 4 of 22)	AluSz6|SINE|Alu	-30990	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
239327	chrY	18424151	18424500	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	-19279	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
4410	chr1	21190771	21191730	+	0	NA	Intergenic	AluJb|SINE|Alu	-14353	NM_001198802	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
2155	chr1	8417871	8418230	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	5782	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
109329	chr19	594851	595450	+	0	NA	intron (NM_001194, intron 1 of 7)	AluJo|SINE|Alu	5269	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
68626	chr14	89703071	89703400	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-84070	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
201751	chr6	149932201	149932400	+	0	NA	Intergenic	AluY|SINE|Alu	-2213	NR_134598	105378052		NR_134598	ENSG00000293239	LOC105378052	-	uncharacterized LOC105378052	ncRNA
13146	chr1	111687901	111688980	+	0	NA	intron (NM_001370217, intron 1 of 7)	AluSx|SINE|Alu	23646	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
65603	chr14	52229801	52230000	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-37798	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
227438	chr9	90141721	90142000	+	0	NA	Intergenic	Intergenic	-100361	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
231278	chr9	130020921	130021350	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	22054	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
34235	chr10	130134801	130135080	+	0	NA	Intergenic	L2a|LINE|L2	-1435	NM_001199868	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
170037	chr3	181726521	181726980	+	0	NA	intron (NR_075091, intron 7 of 7)	CpG	14825	NM_003106	6657		NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box transcription factor 2	protein-coding
239243	chrY	13016301	13016700	+	0	NA	Intergenic	L1PA15|LINE|L1	110795	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
112475	chr19	6411521	6411780	+	0	NA	intron (NM_001321601, intron 2 of 3)	intron (NM_001321601, intron 2 of 3)	4861	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
120286	chr19	43444851	43444950	+	0	NA	Intergenic	MER4A1|LTR|ERV1	20708	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
42477	chr11	69888521	69889000	+	0	NA	Intergenic	Intergenic	-69344	NM_005247	2248		NM_005247	ENSG00000186895	FGF3	HBGF-3|INT2	fibroblast growth factor 3	protein-coding
64497	chr14	24329321	24330480	+	0	NA	exon (NM_001198568, exon 8 of 25)	exon (NM_001198568, exon 8 of 25)	5171	NM_139247	196883		NM_139247	ENSG00000129467	ADCY4	AC4	adenylate cyclase 4	protein-coding
80655	chr16	3006821	3007350	+	0	NA	Intergenic	Intergenic	-5838	NM_020982	9080		NM_020982	ENSG00000213937	CLDN9	DFNB116	claudin 9	protein-coding
84381	chr16	30287971	30288330	+	0	NA	intron (NR_002453, intron 11 of 12)	intron (NR_002453, intron 11 of 12)	-39737	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
122007	chr19	48592551	48592850	+	0	NA	intron (NM_177973, intron 4 of 6)	intron (NM_177973, intron 4 of 6)	-14042	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
39638	chr11	61555301	61555950	+	0	NA	intron (NM_001370211, intron 2 of 7)	intron (NM_001370211, intron 2 of 7)	-12749	NM_001370210	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
126322	chr2	27346301	27346500	+	0	NA	intron (NM_001035521, intron 1 of 18)	AluJb|SINE|Alu	10092	NM_001318909	2976		NM_001521	ENSG00000115207	GTF3C2	TF3C-beta|TFIIIC-BETA|TFIIIC110	general transcription factor IIIC subunit 2	protein-coding
6491	chr1	28409601	28410110	+	0	NA	intron (NM_001350160, intron 3 of 14)	intron (NM_001350160, intron 3 of 14)	-28295	NM_023923	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
38491	chr11	45870051	45870150	+	0	NA	exon (NM_001127457, exon 8 of 12)	exon (NM_001127457, exon 8 of 12)	-15551	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
198164	chr6	95431671	95431930	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	145651	NR_047502	101927288		NR_047502	ENSG00000261366	MANEA-DT	MANEA-AS1	MANEA divergent transcript	ncRNA
38805	chr11	47286101	47286650	+	0	NA	intron (NM_001376650, intron 14 of 31)	intron (NM_001376650, intron 14 of 31)	-14265	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
97120	chr17	42526701	42527930	+	0	NA	Intergenic	Intergenic	-8926	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
236773	chrX	78997951	78998400	+	0	NA	Intergenic	L1PA10|LINE|L1	52784	NM_001324225	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
130148	chr2	74915721	74915980	+	0	NA	intron (NR_125792, intron 1 of 4)	intron (NR_125792, intron 1 of 4)	6719	NR_125792	102724515		NR_125792	ENSG00000204792	LINC01291	LINC01293	long intergenic non-protein coding RNA 1291	ncRNA
99266	chr17	49738471	49740690	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	24551	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
67349	chr14	69675621	69676630	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	64529	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
2481	chr1	9669421	9669680	+	0	NA	intron (NM_005026, intron 1 of 23)	AluJo|SINE|Alu	-14964	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
2366	chr1	9315271	9315430	+	0	NA	intron (NM_025106, intron 1 of 2)	intron (NM_025106, intron 1 of 2)	22456	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
103713	chr17	78831071	78831950	+	0	NA	intron (NR_169585, intron 4 of 19)	AluSx1|SINE|Alu	9304	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
196390	chr6	43276001	43277200	+	0	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	-21660	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
149850	chr21	35050151	35050480	+	0	NA	Intergenic	Intergenic	-1013	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
37897	chr11	34062271	34062430	+	0	NA	intron (NM_203364, intron 2 of 17)	AluY|SINE|Alu	10619	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
160733	chr3	32456021	32456950	+	0	NA	TTS (NM_181472)	TTS (NM_181472)	46367	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
59332	chr13	24510601	24511800	+	0	NA	intron (NM_006437, intron 1 of 33)	intron (NM_006437, intron 1 of 33)	1578	NM_006437	143		NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	poly(ADP-ribose) polymerase family member 4	protein-coding
31944	chr10	100654821	100655350	+	0	NA	Intergenic	CpG	-80311	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
110479	chr19	2028271	2028430	+	0	NA	Intergenic	Intergenic	-12636	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
216721	chr8	22371201	22371600	+	0	NA	intron (NM_001135153, intron 1 of 8)	Tigger13a|DNA|TcMar-Tigger	3862	NM_001135153	23516		NM_015359	ENSG00000104635	SLC39A14	HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
79169	chr16	290101	290300	+	0	NA	intron (NM_181050, intron 8 of 9)	intron (NM_181050, intron 8 of 9)	7036	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
109023	chr18	79723971	79724330	+	0	NA	intron (NM_048368, intron 10 of 11)	Tigger4a|DNA|TcMar-Tigger	42720	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
29591	chr10	71734351	71734850	+	0	NA	intron (NM_022124, intron 32 of 67)	intron (NM_022124, intron 32 of 67)	3250	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
233784	chrX	1436351	1436650	+	0	NA	intron (NM_001173474, intron 2 of 11).2	AluY|SINE|Alu	16409	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
46445	chr11	128085421	128086030	+	0	NA	Intergenic	L1PA14|LINE|L1	-123041	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
101032	chr17	64787951	64789500	+	0	NA	intron (NR_024386, intron 8 of 10)	intron (NR_024386, intron 8 of 10)	-6726	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
44728	chr11	111870801	111871950	+	0	NA	promoter-TSS (NM_001352422)	promoter-TSS (NM_001352422)	-74	NR_147984	79796		NM_024740	ENSG00000086848	ALG9	CDG1L|DIBD1|GIKANIS|LOH11CR1J	ALG9 alpha-1,2-mannosyltransferase	protein-coding
176697	chr4	101018551	101019130	+	0	NA	Intergenic	AluY|SINE|Alu	222032	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
174833	chr4	48340651	48343430	+	0	NA	exon (NM_020846, exon 1 of 8)	exon (NM_020846, exon 1 of 8)	511	NM_020846	57606		NM_020846	ENSG00000109171	SLAIN2	KIAA1458	SLAIN motif family member 2	protein-coding
159851	chr3	16518301	16518830	+	0	NA	Intergenic	Intergenic	-4866	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
61061	chr13	48286771	48287130	+	0	NA	Intergenic	Intergenic	16752	NR_046414	100862704		NR_046414	ENSG00000231473	RB1-DT	LINC00441|ncRNA-RB1	RB1 divergent transcript	ncRNA
78984	chr15	101654751	101655630	+	0	NA	intron (NM_152334, intron 18 of 18)	intron (NM_152334, intron 18 of 18)	-2799	NM_001307960	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
65069	chr14	39408671	39409180	+	0	NA	intron (NM_203301, intron 1 of 3)	AluJb|SINE|Alu	23575	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
82556	chr16	18563071	18563230	+	0	NA	Intergenic	AluY|SINE|Alu	-1038	NM_001004060	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
8690	chr1	42034671	42036400	+	0	NA	intron (NR_038261, intron 1 of 3)	CpG	399	NR_038261	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
162863	chr3	49357701	49359050	+	0	NA	promoter-TSS (NM_001329502)	promoter-TSS (NM_001329502)	-22	NM_000581	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
108155	chr18	62596221	62597100	+	0	NA	Intergenic	CpG	73635	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
81152	chr16	4412971	4413500	+	0	NA	intron (NM_001351729, intron 2 of 27)	intron (NM_001351729, intron 2 of 27)	2662	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
142325	chr20	3672101	3672300	+	0	NA	exon (NM_001282447, exon 14 of 22)	exon (NM_001282447, exon 14 of 22)	-8801	NM_145762	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
220316	chr8	98826971	98827480	+	0	NA	intron (NM_001256312, intron 3 of 12)	AluSz|SINE|Alu	-1537	NM_006281	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
189153	chr5	171385171	171385530	+	0	NA	Intergenic	AluJb|SINE|Alu	1410	NR_037474	100500831		NR_037474	ENSG00000264249	MIR3912	mir-3912	microRNA 3912	ncRNA
44183	chr11	96253701	96254400	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-87388	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
29262	chr10	69128821	69129500	+	0	NA	intron (NM_001318946, intron 1 of 7)	intron (NM_001318946, intron 1 of 7)	4982	NM_001318944	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
100850	chr17	64143971	64144330	+	0	NA	Intergenic	AluSg|SINE|Alu	-1820	NR_132278	105376843		NR_132278	ENSG00000266402	SNHG25	-	small nucleolar RNA host gene 25	ncRNA
10439	chr1	66246321	66247000	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-85448	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
6568	chr1	28742271	28742750	+	0	NA	exon (NM_001173128, exon 5 of 6)	exon (NM_001173128, exon 5 of 6)	5570	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
45700	chr11	119075901	119076300	+	0	NA	intron (NR_165453, intron 7 of 15).2	AluSc|SINE|Alu	8087	NM_001378221	55823		NM_021729	ENSG00000160695	VPS11	END1|HLD12|HLD12; DYT32|PEP5|RNF108|hVPS11	VPS11 core subunit of CORVET and HOPS complexes	protein-coding
160634	chr3	31545951	31546650	+	0	NA	intron (NM_178862, intron 1 of 15)	MLT1G3|LTR|ERVL-MaLR	13375	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
187540	chr5	142748571	142749030	+	0	NA	intron (NR_110558, intron 1 of 3)	intron (NR_110558, intron 1 of 3)	3200	NR_110558	101926975		NR_110558	ENSG00000236714	LINC01844	-	long intergenic non-protein coding RNA 1844	ncRNA
103614	chr17	78730571	78731080	+	0	NA	intron (NM_017456, intron 1 of 12)	AluY|SINE|Alu	6077	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
198505	chr6	106508801	106509000	+	0	NA	intron (NM_001371242, intron 2 of 21)	intron (NM_001371242, intron 2 of 21)	-2955	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
140023	chr2	231050551	231051330	+	0	NA	Intergenic	Intergenic	-5924	NM_001191037	5707		NM_002807	ENSG00000173692	PSMD1	P112|Rpn2|S1	proteasome 26S subunit, non-ATPase 1	protein-coding
177135	chr4	108114501	108115000	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	52047	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
236674	chrX	76454401	76454850	+	0	NA	Intergenic	L1PA16|LINE|L1	26915	NM_020932	57692		NM_020932	ENSG00000198934	MAGEE1	DAMAGE|HCA1	MAGE family member E1	protein-coding
18470	chr1	161610401	161610600	+	0	NA	Intergenic	Intergenic	4441	NR_024151	3311		NR_024151	ENSG00000225217	HSPA7	HSP70B	heat shock protein family A (Hsp70) member 7 (pseudogene)	pseudo
188025	chr5	149636801	149637230	+	0	NA	Intergenic	Intergenic	55517	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
159965	chr3	17693321	17693600	+	0	NA	intron (NM_001134381, intron 1 of 23)	L1PA6|LINE|L1	6560	NM_001134381	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
226923	chr9	79583001	79583350	+	0	NA	intron (NM_001351556, intron 4 of 18)	intron (NM_001351556, intron 4 of 18)	9998	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
209344	chr7	76259551	76259650	+	0	NA	intron (NM_001291831, intron 3 of 15)	intron (NM_001291831, intron 3 of 15)	-43073	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
98693	chr17	47893701	47894350	+	0	NA	intron (NR_135480, intron 1 of 2)	intron (NR_135480, intron 1 of 2)	1791	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
170210	chr3	184150201	184150600	+	0	NA	Intergenic	Intergenic	-4977	NM_004423	1857		NM_004423	ENSG00000161202	DVL3	DRS3	dishevelled segment polarity protein 3	protein-coding
41926	chr11	67292151	67292580	+	0	NA	intron (NM_207354, intron 6 of 14)	intron (NM_207354, intron 6 of 14)	3062	NM_001347901	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
74755	chr15	63225901	63226250	+	0	NA	intron (NM_016530, intron 1 of 7)	AluJb|SINE|Alu	36469	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
23089	chr1	226658071	226658700	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	16683	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
227867	chr9	93624201	93625000	+	0	NA	intron (NM_005392, intron 1 of 21)	(TGA)n|Simple_repeat|Simple_repeat	29759	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
144545	chr20	35725401	35726100	+	0	NA	intron (NM_184234, intron 6 of 16)	AluSq2|SINE|Alu	16510	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
234350	chrX	15335071	15336360	+	0	NA	promoter-TSS (NM_002641)	promoter-TSS (NM_002641)	-161	NR_033835	5277		NM_002641	ENSG00000165195	PIGA	GPI3|MCAHS2|NEDEPH|PIG-A|PNH1	phosphatidylinositol glycan anchor biosynthesis class A	protein-coding
230998	chr9	129501251	129501350	+	0	NA	intron (NR_038955, intron 2 of 4)	MIR|SINE|MIR	12640	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
233683	chrX	1171771	1172130	+	0	NA	Intergenic	LTR2B|LTR|ERV1	40699	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
201939	chr6	151481721	151481980	+	0	NA	Intergenic	Intergenic	-12167	NM_025059	80129		NM_025059	ENSG00000120262	CCDC170	C6orf97|bA282P11.1	coiled-coil domain containing 170	protein-coding
131937	chr2	99142971	99143330	+	0	NA	intron (NM_144706, intron 2 of 3)	AluY|SINE|Alu	1443	NM_001317992	150590		NM_144706	ENSG00000273045	C2orf15	-	chromosome 2 open reading frame 15	protein-coding
123578	chr19	54456751	54457500	+	0	NA	intron (NM_001375640, intron 11 of 14).3	intron (NM_001375640, intron 11 of 14).3	6653	NM_198988	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
138378	chr2	204010501	204010700	+	0	NA	Intergenic	Intergenic	73837	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
76656	chr15	75649371	75650130	+	0	NA	exon (NM_001318146, exon 1 of 3)	exon (NM_001318146, exon 1 of 3)	743	NM_001318146	257364		NM_153271	ENSG00000173548	SNX33	SH3PX3|SH3PXD3C|SNX30	sorting nexin 33	protein-coding
178717	chr4	152779051	152780700	+	0	NA	promoter-TSS (NM_014447)	promoter-TSS (NM_014447)	-62	NM_001287433	27236		NM_014447	ENSG00000164144	ARFIP1	HSU52521	ADP ribosylation factor interacting protein 1	protein-coding
136626	chr2	179040901	179041300	+	0	NA	intron (NM_173648, intron 2 of 23)	AluY|SINE|Alu	9037	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
148126	chr20	63457501	63458030	+	0	NA	intron (NM_001382235, intron 1 of 16)	intron (NM_001382235, intron 1 of 16)	14890	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
220537	chr8	100694371	100695580	+	0	NA	Intergenic	AluSq2|SINE|Alu	8049	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
113107	chr19	8292451	8293030	+	0	NA	Intergenic	AluSq2|SINE|Alu	15618	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
236120	chrX	57573771	57573930	+	0	NA	Intergenic	L1P2|LINE|L1	-18161	NM_007157	158586		NM_007157	ENSG00000198455	ZXDB	ZNF905|dJ83L6.1	zinc finger X-linked duplicated B	protein-coding
121598	chr19	47388801	47389000	+	0	NA	Intergenic	AluSz|SINE|Alu	30627	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
182740	chr5	68272071	68272630	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-16169	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
123986	chr19	55441351	55441650	+	0	NA	intron (NM_001145176, intron 1 of 3)	L2c|LINE|L2	1363	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
154577	chr22	36268221	36268730	+	0	NA	TTS (NM_003661)	TTS (NM_003661)	15342	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
191233	chr6	5828251	5828550	+	0	NA	Intergenic	Intergenic	-133128	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
194185	chr6	32125921	32126180	+	0	NA	intron (NM_001136153, intron 5 of 17).4	(AC)n|Simple_repeat|Simple_repeat	2196	NM_004381	1388		NM_004381	ENSG00000213676	ATF6B	ATF6beta|CREB-RP|CREBL1|G13	activating transcription factor 6 beta	protein-coding
573	chr1	1268321	1268730	+	0	NA	intron (NM_194458, intron 1 of 6)	intron (NM_194458, intron 1 of 6)	5329	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
79678	chr16	1249221	1249950	+	0	NA	Intergenic	(CCGCC)n|Simple_repeat|Simple_repeat	-6484	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
168319	chr3	141659721	141660530	+	0	NA	Intergenic	CpG	-3074	NR_136190	646730		NR_136190		LINC02618	-	long intergenic non-protein coding RNA 2618	ncRNA
227361	chr9	89481121	89483250	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	-2295	NR_163884	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
52500	chr12	56034471	56035630	+	0	NA	exon (NM_001351090, exon 7 of 7)	exon (NM_001351090, exon 7 of 7)	-6868	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
80722	chr16	3099251	3099350	+	0	NA	promoter-TSS (NM_001282415)	promoter-TSS (NM_001282415)	-6	NM_001365273	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
47267	chr12	1534851	1534950	+	0	NA	Intergenic	Intergenic	-2708	NR_160736	107984507		NR_160736		LOC107984507	-	uncharacterized LOC107984507	ncRNA
97731	chr17	44374771	44375400	+	0	NA	exon (NM_000419, exon 27 of 30)	exon (NM_000419, exon 27 of 30)	-11232	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
199222	chr6	111809401	111809630	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-49598	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
32928	chr10	110254451	110254880	+	0	NA	intron (NM_005962, intron 3 of 5)	Tigger1|DNA|TcMar-Tigger	28669	NM_005962	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
171787	chr4	336701	338700	+	0	NA	promoter-TSS (NM_001348279)	promoter-TSS (NM_001348279)	-114	NM_001348280	7700		NM_003441	ENSG00000131127	ZNF141	D4S90|pHZ-44	zinc finger protein 141	protein-coding
198932	chr6	110389851	110390350	+	0	NA	intron (NM_001368172, intron 5 of 5)	intron (NM_001368172, intron 5 of 5)	25475	NM_001372108	8528		NM_003649	ENSG00000203797	DDO	DASOX|DASPO|DDO-1|DDO-2	D-aspartate oxidase	protein-coding
95145	chr17	35072121	35072700	+	0	NA	intron (NR_037713, intron 1 of 6)	L1MD2|LINE|L1	-8703	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
214255	chr7	148939151	148939450	+	0	NA	Intergenic	MER34A1|LTR|ERV1	-2188	NR_001571	6090		NR_001571		RNY5	Y5|hY5	RNA, Ro60-associated Y5	ncRNA
34313	chr10	132143951	132144450	+	0	NA	intron (NM_001323090, intron 11 of 23)	intron (NM_001323090, intron 11 of 23)	-42748	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
213735	chr7	140388651	140389230	+	0	NA	intron (NM_032295, intron 1 of 11)	intron (NM_032295, intron 1 of 11)	9590	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
161389	chr3	41205521	41206250	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	6380	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
20508	chr1	198664171	198665680	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	25885	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
74275	chr15	57527571	57527730	+	0	NA	intron (NM_001252335, intron 13 of 19)	intron (NM_001252335, intron 13 of 19)	-64254	NM_001018091	145781		NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GCOM1, MYZAP-POLR2M combined locus	protein-coding
152273	chr22	20285551	20286630	+	0	NA	Intergenic	Intergenic	-17772	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
88336	chr16	84519951	84520350	+	0	NA	Intergenic	Intergenic	-15491	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
96768	chr17	41731771	41732400	+	0	NA	exon (NM_001367462, exon 4 of 10)	exon (NM_001367462, exon 4 of 10)	2558	NM_001367462	9001		NM_003949	ENSG00000173805	HAP1	HAP2|HIP5|HLP|hHLP1	huntingtin associated protein 1	protein-coding
4156	chr1	19362771	19363130	+	0	NA	intron (NM_001206540, intron 4 of 9)	intron (NM_001206540, intron 4 of 9)	50624	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
72140	chr15	29034651	29034950	+	0	NA	intron (NM_001353793, intron 2 of 12).2	MER5A|DNA|hAT-Charlie	-35858	NM_001353797	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
87995	chr16	80725671	80726000	+	0	NA	intron (NM_152342, intron 1 of 6)	intron (NM_152342, intron 1 of 6)	78763	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
28385	chr10	47377401	47377800	+	0	NA	intron (NM_001346932, intron 2 of 3)	intron (NM_001346932, intron 2 of 3)	6693	NM_153034	118738		NM_153034	ENSG00000265763	ZNF488	-	zinc finger protein 488	protein-coding
171619	chr3	197453971	197454880	+	0	NA	Intergenic	L3|LINE|CR1	55236	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
178560	chr4	151111371	151112100	+	0	NA	Intergenic	Intergenic	7908	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
53394	chr12	64695651	64695750	+	0	NA	non-coding (NR_040718, exon 4 of 4)	non-coding (NR_040718, exon 4 of 4)	63706	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
159357	chr3	13281551	13282050	+	0	NA	intron (NM_001376938, intron 1 of 15)	intron (NM_001376938, intron 1 of 15)	1457	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
135025	chr2	156309251	156309950	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	23121	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
79367	chr16	635151	636500	+	0	NA	intron (NM_032366, intron 1 of 5)	CpG-8866	480	NR_109978	84326		NM_032366	ENSG00000130731	METTL26	C16orf13|JFP2	methyltransferase like 26	protein-coding
87960	chr16	79769501	79769700	+	0	NA	promoter-TSS (NR_104660)	promoter-TSS (NR_104660)	-871	NR_104660	101928248		NR_104660	ENSG00000260876	LINC01229	-	long intergenic non-protein coding RNA 1229	ncRNA
134423	chr2	143123971	143124130	+	0	NA	Intergenic	L2a|LINE|L2	-5369	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
18609	chr1	165717851	165718150	+	0	NA	Intergenic	Intergenic	19250	NR_036683	440700		NR_036683	ENSG00000293132	LOC440700	-	carbonic anhydrase 14 pseudogene	pseudo
36911	chr11	10794471	10794830	+	0	NA	Intergenic	L2a|LINE|L2	6958	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
233266	chr9	137288271	137288630	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	10724	NM_017723	54863		NM_017723	ENSG00000198113	TOR4A	C9orf167	torsin family 4 member A	protein-coding
222810	chr8	142458121	142458380	+	0	NA	intron (NM_001702, intron 1 of 30)	intron (NM_001702, intron 1 of 30)	8601	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
185378	chr5	127757571	127757750	+	0	NA	intron (NM_001317938, intron 3 of 6)	intron (NM_001317938, intron 3 of 6)	54269	NM_001317938	728586		NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
114471	chr19	12735971	12736130	+	0	NA	Intergenic	(TTA)n|Simple_repeat|Simple_repeat	-1056	NM_001371489	439		NM_004317	ENSG00000198356	GET3	ARSA-I|ARSA1|ASNA-I|ASNA1|CMD2H|TRC40	guided entry of tail-anchored proteins factor 3, ATPase	protein-coding
96539	chr17	40357071	40357700	+	0	NA	3' UTR (NM_001024809, exon 8 of 8)	3' UTR (NM_001024809, exon 8 of 8)	7352	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
12207	chr1	100392621	100392880	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	40244	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
197883	chr6	89230721	89230980	+	0	NA	intron (NM_001267582, intron 1 of 11)	L1PA2|LINE|L1	438	NM_001267582	2569		NM_002042	ENSG00000146276	GABRR1	-	gamma-aminobutyric acid type A receptor subunit rho1	protein-coding
67147	chr14	68718321	68718780	+	0	NA	Intergenic	Intergenic	74517	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
102356	chr17	75511501	75511850	+	0	NA	intron (NM_020753, intron 2 of 19)	intron (NM_020753, intron 2 of 19)	-1785	NM_001142643	57513		NM_020753	ENSG00000177303	CASKIN2	ANKS5B	CASK interacting protein 2	protein-coding
178689	chr4	152532801	152533300	+	0	NA	intron (NM_001349798, intron 2 of 13)	AluSz|SINE|Alu	1983	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
4365	chr1	20715851	20716680	+	0	NA	intron (NM_020816, intron 1 of 14)	intron (NM_020816, intron 1 of 14)	1742	NM_020816	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
32364	chr10	102392301	102392680	+	0	NA	Intergenic	AluJb|SINE|Alu	-1620	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
120764	chr19	45425851	45426350	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluSp|SINE|Alu	-2183	NM_001369408	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
219873	chr8	85245271	85246100	+	0	NA	5' UTR (NM_198584, exon 1 of 7)	5' UTR (NM_198584, exon 1 of 7)	227	NM_198584	377677		NM_198584	ENSG00000185015	CA13	CAXIII	carbonic anhydrase 13	protein-coding
218756	chr8	58927271	58927680	+	0	NA	intron (NM_014729, intron 3 of 8)	MIRb|SINE|MIR	191672	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
166406	chr3	113606601	113607250	+	0	NA	intron (NR_136280, intron 15 of 25)	intron (NR_136280, intron 15 of 25)	12049	NR_039648	100616476		NR_039648	ENSG00000265253	MIR4446	mir-4446	microRNA 4446	ncRNA
77352	chr15	82647151	82648730	+	0	NA	promoter-TSS (NM_001288819).2	promoter-TSS (NM_001288819).2	110	NM_001365243	64506		NM_030594	ENSG00000214575	CPEB1	CPE-BP1|CPEB|CPEB-1|h-CPEB|hCPEB-1	cytoplasmic polyadenylation element binding protein 1	protein-coding
18063	chr1	160637701	160638830	+	0	NA	intron (NR_104400, intron 1 of 4)	L2a|LINE|L2	8779	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
149782	chr21	34892101	34892680	+	0	NA	intron (NM_001754, intron 3 of 8)	intron (NM_001754, intron 3 of 8)	-3691	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
89041	chr16	88432301	88432580	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-20840	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
124152	chr19	56066351	56066900	+	0	NA	promoter-TSS (NR_110741)	promoter-TSS (NR_110741)	-59	NR_110741	101928886		NR_110741	ENSG00000267522	LINC01864	-	long intergenic non-protein coding RNA 1864	ncRNA
75564	chr15	67039121	67039780	+	0	NA	intron (NR_135686, intron 2 of 5)	intron (NR_135686, intron 2 of 5)	24732	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
21194	chr1	203830701	203831100	+	0	NA	intron (NM_001376350, intron 8 of 17)	intron (NM_001376350, intron 8 of 17)	-30699	NM_001304464	6635		NM_003094	ENSG00000182004	SNRPE	HYPT11|SME|Sm-E|snRNP-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
93300	chr17	18153571	18154830	+	0	NA	intron (NM_016239, intron 43 of 64)	intron (NM_016239, intron 43 of 64)	-29628	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
170804	chr3	189144501	189144910	+	0	NA	Intergenic	CR1-3_Croc|LINE|CR1	-27266	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
211848	chr7	110563121	110563330	+	0	NA	Intergenic	L1PA2|LINE|L1	-527781	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
185651	chr5	131546871	131547550	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	88019	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
173910	chr4	25233171	25234400	+	0	NA	promoter-TSS (NR_144633)	promoter-TSS (NR_144633)	-248	NR_144633	55300		NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
80214	chr16	2163021	2163550	+	0	NA	intron (NM_032271, intron 1 of 20)	intron (NM_032271, intron 1 of 20)	7503	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
122834	chr19	50427551	50428500	+	0	NA	intron (NM_003121, intron 5 of 5)	CpG	-4867	NM_004533	4606		NM_004533	ENSG00000086967	MYBPC2	MYBPC|MYBPCF|fsMyBP-C	myosin binding protein C2	protein-coding
74622	chr15	60673901	60674150	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	-7544	NR_120318	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
230612	chr9	128624271	128624630	+	0	NA	exon (NM_003127, exon 45 of 56)	exon (NM_003127, exon 45 of 56)	32400	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
68448	chr14	81532221	81532480	+	0	NA	intron (NM_005065, intron 1 of 20)	intron (NM_005065, intron 1 of 20)	1503	NM_005065	6400		NM_005065	ENSG00000071537	SEL1L	Hrd3|PRO1063|SEL1-LIKE|SEL1L1	SEL1L adaptor subunit of SYVN1 ubiquitin ligase	protein-coding
205245	chr7	8047801	8048000	+	0	NA	intron (NM_138426, intron 3 of 7)	LTR78|LTR|ERV1	79104	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
88907	chr16	87805071	87805530	+	0	NA	Intergenic	AluSx|SINE|Alu	-26152	NR_120309	102724467		NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA
233298	chr9	137324001	137324200	+	0	NA	exon (NM_017820, exon 18 of 22)	exon (NM_017820, exon 18 of 22)	-21829	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
185901	chr5	132775771	132775930	+	0	NA	intron (NM_001098813, intron 1 of 9)	intron (NM_001098813, intron 1 of 9)	1389	NM_015146	23176		NM_015146	ENSG00000164402	SEPTIN8	SEP2|SEPT8|Septin-8	septin 8	protein-coding
164704	chr3	67683501	67683700	+	0	NA	intron (NR_109992, intron 3 of 6)	intron (NR_109992, intron 3 of 6)	28903	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
49252	chr12	19451151	19451250	+	0	NA	intron (NM_001267043, intron 1 of 8)	MLT1G1|LTR|ERVL-MaLR	10601	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
164953	chr3	71258251	71258550	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-13323	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
168013	chr3	136866401	136866600	+	0	NA	intron (NM_001291999, intron 1 of 3)	AluSp|SINE|Alu	4292	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
15818	chr1	151303851	151304150	+	0	NA	intron (NM_001369628, intron 5 of 12)	intron (NM_001369628, intron 5 of 12)	21701	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
121566	chr19	47266451	47266830	+	0	NA	exon (NM_015603, exon 8 of 12)	exon (NM_015603, exon 8 of 12)	-7783	NR_037675	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
129290	chr2	68463021	68463630	+	0	NA	3' UTR (NM_001024680, exon 4 of 4)	3' UTR (NM_001024680, exon 4 of 4)	3969	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
199197	chr6	111782451	111783300	+	0	NA	intron (NM_002037, intron 2 of 13)	MamSINE1|SINE|tRNA-RTE	-22958	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
228119	chr9	96640651	96640950	+	0	NA	3' UTR (NM_153698, exon 6 of 6)	3' UTR (NM_153698, exon 6 of 6)	14517	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
115526	chr19	15446451	15446700	+	0	NA	intron (NM_001371589, intron 2 of 12)	intron (NM_001371589, intron 2 of 12)	-2973	NR_031716	100302127		NR_031716	ENSG00000269782	MIR1470	MIRN1470|hsa-mir-1470	microRNA 1470	ncRNA
56859	chr12	120260501	120261000	+	0	NA	intron (NM_001080855, intron 1 of 11)	AluJb|SINE|Alu	4980	NM_002859	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
117762	chr19	29679071	29679300	+	0	NA	Intergenic	Intergenic	13724	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
40511	chr11	64277051	64277750	+	0	NA	intron (NM_032989, intron 2 of 3)	intron (NM_032989, intron 2 of 3)	6869	NM_001378084	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
147412	chr20	58855571	58856300	+	0	NA	intron (NM_001309883, intron 2 of 5)	CpG-17920	2954	NM_001077490	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
154320	chr22	32050701	32051100	+	0	NA	intron (NM_000343, intron 2 of 14)	intron (NM_000343, intron 2 of 14)	7639	NM_000343	6523		NM_000343	ENSG00000100170	SLC5A1	D22S675|NAGT|SGLT-1|SGLT1	solute carrier family 5 member 1	protein-coding
100782	chr17	64006671	64006830	+	0	NA	5' UTR (NM_000873, exon 1 of 4)	5' UTR (NM_000873, exon 1 of 4)	173	NM_000873	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
44830	chr11	114062251	114062500	+	0	NA	promoter-TSS (NM_001354752)	promoter-TSS (NM_001354752)	-836	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
92594	chr17	9517471	9517630	+	0	NA	intron (NR_033656, intron 2 of 5)	MIRc|SINE|MIR	58270	NM_004853	9482		NM_004853	ENSG00000170310	STX8	CARB	syntaxin 8	protein-coding
120663	chr19	45090571	45090730	+	0	NA	promoter-TSS (NR_134887)	promoter-TSS (NR_134887)	-259	NR_134887	105372419		NR_134887	ENSG00000267348	GEMIN7-AS1	-	GEMIN7 antisense RNA 1	ncRNA
213869	chr7	142327471	142327630	+	0	NA	Intergenic	Intergenic	-55301	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
237911	chrX	131827971	131828200	+	0	NA	intron (NR_152876, intron 1 of 9)	intron (NR_152876, intron 1 of 9)	2558	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
99480	chr17	50170951	50171600	+	0	NA	TTS (NR_024193)	TTS (NR_024193)	1201	NR_024193	373861		NM_194072		H1-9P	H1-9|H1.9|HILS1	H1.9 linker histone, pseudogene	pseudo
142541	chr20	5111151	5111700	+	0	NA	intron (NM_001009925, intron 1 of 3)	AluSx4|SINE|Alu	1651	NM_001009923	29058		NM_014145	ENSG00000089063	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
196738	chr6	45327951	45328650	+	0	NA	promoter-TSS (NM_001015051)	promoter-TSS (NM_001015051)	-17	NM_001015051	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
152540	chr22	20993071	20993600	+	0	NA	intron (NM_006767, intron 11 of 20)	intron (NM_006767, intron 11 of 20)	-8587	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
110446	chr19	1985821	1986430	+	0	NA	3' UTR (NM_017797, exon 9 of 9)	3' UTR (NM_017797, exon 9 of 9)	29589	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
164603	chr3	66279121	66279580	+	0	NA	intron (NM_173471, intron 6 of 10)	MIR|SINE|MIR	58347	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
33505	chr10	119140501	119140900	+	0	NA	TTS (NM_213649)	TTS (NM_213649)	24992	NR_110305	119559		NM_178867	ENSG00000183605	SFXN4	BCRM1|COXPD18|SLC56A4	sideroflexin 4	protein-coding
144321	chr20	34877801	34878780	+	0	NA	intron (NM_001076552, intron 1 of 18)	MIRb|SINE|MIR	1678	NM_018677	55902		NM_018677	ENSG00000131069	ACSS2	ACAS2|ACECS|ACS|ACSA|AceCS1|dJ1161H23.1	acyl-CoA synthetase short chain family member 2	protein-coding
221189	chr8	120732051	120733700	+	0	NA	intron (NM_021021, intron 1 of 6)	AluSz|SINE|Alu	-28378	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
11119	chr1	86397771	86397930	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-1508	NM_001184765	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
161083	chr3	38121871	38122030	+	0	NA	TTS (NM_001607)	TTS (NM_001607)	15177	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
15111	chr1	148630321	148630580	+	0	NA	intron (NM_001364008, intron 2 of 4)	intron (NM_001364008, intron 2 of 4)	-34733	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
94884	chr17	31532771	31532930	+	0	NA	3' UTR (NM_001346747, exon 12 of 12)	3' UTR (NM_001346747, exon 12 of 12)	-2033	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
27777	chr10	35409351	35409450	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	72526	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
49434	chr12	24742371	24742780	+	0	NA	Intergenic	Intergenic	-158407	NR_029451	144360		NM_144667	ENSG00000197503	LINC00477	C12orf67|FAM191B	long intergenic non-protein coding RNA 477	ncRNA
48200	chr12	8066151	8066850	+	0	NA	promoter-TSS (NM_001326477)	promoter-TSS (NM_001326477)	-141	NM_004054	719		NM_004054	ENSG00000171860	C3AR1	AZ3B|C3AR|HNFAG09	complement C3a receptor 1	protein-coding
167161	chr3	128066371	128067080	+	0	NA	intron (NM_001319086, intron 9 of 9)	intron (NM_001319086, intron 9 of 9)	-9085	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
184777	chr5	110740621	110741400	+	0	NA	intron (NM_001303249, intron 1 of 7)	intron (NM_001303249, intron 1 of 7)	2003	NM_138773	91137		NM_138773	ENSG00000164209	SLC25A46	HMSN6B|PCH1E	solute carrier family 25 member 46	protein-coding
51087	chr12	49965021	49965450	+	0	NA	3' UTR (NM_001651, exon 4 of 4)	3' UTR (NM_001651, exon 4 of 4)	-2311	NR_110589	101927318		NR_110589	ENSG00000257588	AQP5-AS1	MIAC	AQP5 and AQP2 antisense RNA 2	ncRNA
118261	chr19	35259101	35259300	+	0	NA	intron (NM_205835, intron 3 of 7)	intron (NM_205835, intron 3 of 7)	-9762	NM_001321150	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
9012	chr1	44725601	44725800	+	0	NA	TTS (NM_001145636)	TTS (NM_001145636)	-3799	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
22794	chr1	224437851	224437950	+	0	NA	intron (NM_001322303, intron 1 of 5)	intron (NM_001322303, intron 1 of 5)	3051	NR_136293	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
210206	chr7	99111871	99112230	+	0	NA	intron (NM_181349, intron 1 of 17)	L1M4|LINE|L1	32058	NM_181349	57154		NM_020429	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
37698	chr11	28238151	28238250	+	0	NA	intron (NM_001297775, intron 4 of 6)	L1PA3|LINE|L1	129812	NM_152636	196074		NM_152636	ENSG00000169519	METTL15	METT5D1	methyltransferase 15, mitochondrial 12S rRNA N4-cytidine	protein-coding
227848	chr9	93508251	93508550	+	0	NA	intron (NM_001286722, intron 5 of 17)	intron (NM_001286722, intron 5 of 17)	-54799	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
202504	chr6	158514271	158514850	+	0	NA	Intergenic	Intergenic	-22080	NM_020823	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
122050	chr19	48650951	48651250	+	0	NA	intron (NR_004401, intron 1 of 4)	AluJb|SINE|Alu	-4913	NR_136241	770		NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
218552	chr8	54025971	54026330	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3702	NR_109902	6917		NM_006756	ENSG00000187735	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A1	protein-coding
233032	chr9	137037051	137037350	+	0	NA	TTS (NM_207511)	TTS (NM_207511)	-5112	NM_004479	2529		NM_004479	ENSG00000180549	FUT7	FucT-VII	fucosyltransferase 7	protein-coding
149586	chr21	33260921	33261180	+	0	NA	intron (NM_001385055, intron 8 of 9)	AluSz6|SINE|Alu	5210	NR_038974	100288432		NR_038974		IL10RB-DT	IFNAR2-AS1|IL10RB-AS1	IL10RB divergent transcript	ncRNA
232661	chr9	136489471	136489630	+	0	NA	Intergenic	Intergenic	-5791	NM_001276418	9919		NM_014866	ENSG00000148396	SEC16A	KIAA0310|SEC16L|p250	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding
101784	chr17	73194501	73194700	+	0	NA	intron (NM_018714, intron 1 of 13)	AluSx1|SINE|Alu	1545	NM_018714	9382		NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
112330	chr19	5911601	5912000	+	0	NA	TTS (NM_001017921)	TTS (NM_001017921)	-2454	NM_004058	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
73354	chr15	42207671	42208700	+	0	NA	5' UTR (NM_015289, exon 1 of 25)	5' UTR (NM_015289, exon 1 of 25)	119	NM_001301138	23339		NM_015289	ENSG00000166887	VPS39	TLP|VAM6|hVam6p	VPS39 subunit of HOPS complex	protein-coding
72834	chr15	40132601	40132800	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-23821	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
235708	chrX	48894921	48895380	+	0	NA	intron (NM_005834, intron 3 of 6)	intron (NM_005834, intron 3 of 6)	-2762	NM_001032383	10084		NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
238783	chrX	154368151	154370500	+	0	NA	intron (NM_001110556, intron 2 of 47)	intron (NM_001110556, intron 2 of 47)	5309	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
189615	chr5	175971551	175972230	+	0	NA	Intergenic	AluY|SINE|Alu	-3575	NM_032361	84321		NM_032361	ENSG00000051596	THOC3	THO3|hTREX45	THO complex subunit 3	protein-coding
97577	chr17	44097601	44097800	+	0	NA	intron (NM_001382393, intron 3 of 26)	intron (NM_001382393, intron 3 of 26)	-18212	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
18301	chr1	161157751	161158080	+	0	NA	intron (NM_016406, intron 4 of 5)	L1PA11|LINE|L1	-1585	NM_001319847	27005		NM_012475	ENSG00000143258	USP21	USP16|USP23	ubiquitin specific peptidase 21	protein-coding
231713	chr9	131739221	131740880	+	0	NA	promoter-TSS (NM_001377937)	promoter-TSS (NM_001377937)	26	NM_001377935	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
189488	chr5	173131951	173132580	+	0	NA	intron (NM_153607, intron 8 of 8)	AluSq|SINE|Alu	-12266	NM_013979	662		NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2 interacting protein 1	protein-coding
212087	chr7	115369071	115369230	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-137795	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
108714	chr18	77078821	77079380	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	53683	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
18972	chr1	169088951	169089500	+	0	NA	Intergenic	Intergenic	-2220	NR_104091	101978719		NR_104091	ENSG00000203601	LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
121762	chr19	47759171	47759330	+	0	NA	intron (NR_132382, intron 2 of 2)	L1M5|LINE|L1	3397	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
238684	chrX	154056901	154058480	+	0	NA	intron (NM_001369391, intron 4 of 6)	MIRb|SINE|MIR	-37701	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
104003	chr17	80100121	80100710	+	0	NA	3' UTR (NM_017950, exon 20 of 20)	3' UTR (NM_017950, exon 20 of 20)	-1166	NM_001079803	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
197259	chr6	70412951	70414400	+	0	NA	5' UTR (NM_001351600, exon 1 of 21)	5' UTR (NM_001351600, exon 1 of 21)	167	NM_001162529	57579		NM_020819	ENSG00000082269	FAM135A	KIAA1411	family with sequence similarity 135 member A	protein-coding
203937	chr7	1540001	1540450	+	0	NA	exon (NM_002360, exon 3 of 3)	exon (NM_002360, exon 3 of 3)	-5345	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
156107	chr22	40085621	40086080	+	0	NA	intron (NM_001024843, intron 1 of 23)	(TTG)n|Simple_repeat|Simple_repeat	41033	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
133939	chr2	130543871	130544630	+	0	NA	intron (NR_033930, intron 1 of 2)	intron (NR_033930, intron 1 of 2)	5645	NR_027314	150527		NR_027313	ENSG00000290614	PRSS40A	TISP43	serine protease 40A (pseudogene)	pseudo
105405	chr17	82774971	82776180	+	0	NA	intron (NM_005993, intron 6 of 38)	intron (NM_005993, intron 6 of 38)	23510	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
9127	chr1	45348671	45349030	+	0	NA	intron (NM_007170, intron 5 of 10)	intron (NM_007170, intron 5 of 10)	-8380	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
115722	chr19	16243501	16244300	+	0	NA	3' UTR (NM_032493, exon 12 of 12)	3' UTR (NM_032493, exon 12 of 12)	45989	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
101683	chr17	68396771	68397350	+	0	NA	intron (NM_001352901, intron 10 of 11)	intron (NM_001352901, intron 10 of 11)	-16563	NM_001278433	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
36152	chr11	3141021	3141480	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	24060	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
112284	chr19	5824521	5825730	+	0	NA	intron (NM_004558, intron 2 of 2)	intron (NM_004558, intron 2 of 2)	13667	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
117566	chr19	21327201	21327830	+	0	NA	intron (NM_021269, intron 1 of 3)	AluSp|SINE|Alu	1895	NM_021269	7562		NM_021269	ENSG00000182141	ZNF708	KOX8|ZNF15|ZNF15L1	zinc finger protein 708	protein-coding
100586	chr17	63427971	63428780	+	0	NA	TTS (NM_025185)	TTS (NM_025185)	11892	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
3190	chr1	13725671	13726930	+	0	NA	intron (NM_001135610, intron 2 of 7)	intron (NM_001135610, intron 2 of 7)	21445	NM_012231	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
67010	chr14	67487021	67487280	+	0	NA	5' UTR (NM_182526, exon 2 of 3)	5' UTR (NM_182526, exon 2 of 3)	1571	NM_001348542	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
50317	chr12	46585751	46586250	+	0	NA	intron (NR_125377, intron 3 of 3)	L1PA6|LINE|L1	201893	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
171802	chr4	566571	566750	+	0	NA	Intergenic	Intergenic	9635	NM_001362796	112441426		NM_001362796	ENSG00000273238	TMEM271	-	transmembrane protein 271	protein-coding
163881	chr3	52510871	52511050	+	0	NA	intron (NM_015136, intron 25 of 68)	intron (NM_015136, intron 25 of 68)	15622	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
154599	chr22	36289901	36291000	+	0	NA	intron (NM_002473, intron 31 of 40)	SVA_C|Retroposon|SVA	-3543	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
45885	chr11	120120171	120120370	+	0	NA	intron (NM_012101, intron 6 of 8)	intron (NM_012101, intron 6 of 8)	8583	NM_001330382	23650		NM_012101	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding
114519	chr19	12803651	12804180	+	0	NA	Intergenic	AluJb|SINE|Alu	-2115	NM_005809	7001		NM_005809	ENSG00000167815	PRDX2	HEL-S-2a|NKEF-B|NKEFB|PRP|PRX2|PRXII|PTX1|TDPX1|TPX1|TSA	peroxiredoxin 2	protein-coding
165121	chr3	71703801	71704530	+	0	NA	intron (NM_173359, intron 3 of 7)	MamGypLTR2c|LTR|Gypsy	21237	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
108613	chr18	75410751	75410930	+	0	NA	3' UTR (NM_001037331, exon 3 of 3)	3' UTR (NM_001037331, exon 3 of 3)	16863	NM_001037331	284274		NM_001037331	ENSG00000206026	SMIM21	C18orf62	small integral membrane protein 21	protein-coding
136388	chr2	176126871	176127430	+	0	NA	Intergenic	Intergenic	-2555	NM_019558	3234		NM_019558	ENSG00000175879	HOXD8	HOX4|HOX4E|HOX5.4	homeobox D8	protein-coding
232805	chr9	136713851	136713950	+	0	NA	intron (NM_152421, intron 1 of 4)	intron (NM_152421, intron 1 of 4)	1328	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
72017	chr15	28095841	28097830	+	0	NA	intron (NM_000275, intron 1 of 23)	CpG	2480	NM_000275	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
82625	chr16	18930421	18930680	+	0	NA	Intergenic	Intergenic	-4142	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
17528	chr1	156775501	156775700	+	0	NA	intron (NM_005973, intron 1 of 6)	AluSx4|SINE|Alu	8065	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
62213	chr13	98477871	98478550	+	0	NA	intron (NM_001286649, intron 2 of 9)	intron (NM_001286649, intron 2 of 9)	43915	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
231614	chr9	131567621	131568250	+	0	NA	Intergenic	LTR41B|LTR|ERVL	22412	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
56696	chr12	120077901	120078100	+	0	NA	intron (NR_147892, intron 8 of 11)	intron (NR_147892, intron 8 of 11)	38753	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
65575	chr14	51988771	51990300	+	0	NA	promoter-TSS (NM_016039)	promoter-TSS (NM_016039)	-11	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
187718	chr5	143397351	143398080	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	5568	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
229456	chr9	121686721	121687200	+	0	NA	intron (NM_032552, intron 2 of 16)	intron (NM_032552, intron 2 of 16)	-55825	NM_138709	153090		NM_032552	ENSG00000136848	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
86944	chr16	68112201	68112600	+	0	NA	intron (NM_173165, intron 1 of 9)	AluSx4|SINE|Alu	27030	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
217189	chr8	26319951	26320430	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	26974	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
200169	chr6	130585621	130585880	+	0	NA	Intergenic	Intergenic	148633	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
130167	chr2	75710201	75711930	+	0	NA	promoter-TSS (NM_001201334)	promoter-TSS (NM_001201334)	-150	NM_001201335	6936		NM_003203	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
12719	chr1	109509101	109510380	+	0	NA	promoter-TSS (NM_020703)	promoter-TSS (NM_020703)	-13	NM_020703	57463		NM_020703	ENSG00000181754	AMIGO1	ALI2|AMIGO|AMIGO-1	adhesion molecule with Ig like domain 1	protein-coding
44144	chr11	96157051	96157700	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-184063	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
39014	chr11	47741501	47741700	+	0	NA	intron (NM_015308, intron 8 of 16)	AluSg4|SINE|Alu	25741	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
199179	chr6	111761171	111761330	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-1333	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
51439	chr12	52035721	52035980	+	0	NA	intron (NM_001202233, intron 1 of 7)	intron (NM_001202233, intron 1 of 7)	-1865	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
55431	chr12	104516701	104516900	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	59852	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
83297	chr16	24168301	24168500	+	0	NA	intron (NM_212535, intron 10 of 16)	MER112|DNA|hAT-Charlie	-34716	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
35466	chr11	1469171	1469330	+	0	NA	TTS (NM_001172223)	TTS (NM_001172223)	11636	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
26568	chr10	21732171	21732430	+	0	NA	intron (NR_136736, intron 20 of 25)	intron (NR_136736, intron 20 of 25)	198068	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
68555	chr14	89364621	89366150	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	51848	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
117598	chr19	21850421	21850980	+	0	NA	intron (NM_001256650, intron 1 of 5)	BSR/Beta|Satellite|Satellite	1365	NM_001256651	7594		NM_003423	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
157518	chr22	45342601	45342800	+	0	NA	TTS (NM_001349913)	TTS (NM_001349913)	24257	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
176646	chr4	99936851	99937780	+	0	NA	intron (NM_001031723, intron 1 of 7)	AluY|SINE|Alu	9303	NM_001278311	79982		NM_024920	ENSG00000164031	DNAJB14	EGNR9427|PRO34683	DnaJ heat shock protein family (Hsp40) member B14	protein-coding
104309	chr17	80900251	80900350	+	0	NA	intron (NM_020761, intron 20 of 33)	intron (NM_020761, intron 20 of 33)	70913	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
234307	chrX	13717771	13718130	+	0	NA	intron (NM_001128835, intron 3 of 5)	MLT1C|LTR|ERVL-MaLR	16670	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
191421	chr6	10413801	10414830	+	0	NA	intron (NR_033910, intron 1 of 2)	intron (NR_033910, intron 1 of 2)	759	NM_001372066	7020		NM_003220	ENSG00000137203	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha	protein-coding
100807	chr17	64057971	64058730	+	0	NA	intron (NM_001433, intron 11 of 21)	MARNA|DNA|TcMar-Mariner	-37716	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
73633	chr15	44666421	44667380	+	0	NA	intron (NM_001330283, intron 13 of 14)	MIR|SINE|MIR	-3238	NM_025137	80208		NM_025137	ENSG00000104133	SPG11	ALS5|CMT2X|KIAA1840	SPG11 vesicle trafficking associated, spatacsin	protein-coding
230809	chr9	129025121	129026000	+	0	NA	intron (NM_001369914, intron 1 of 10)	AluSx1|SINE|Alu	2771	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
26739	chr10	22690221	22690630	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	23683	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
21002	chr1	202807121	202809200	+	0	NA	exon (NM_001347591, exon 1 of 26)	exon (NM_001347591, exon 1 of 26)	261	NM_006618	10765		NM_006618	ENSG00000117139	KDM5B	CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1	lysine demethylase 5B	protein-coding
131630	chr2	97004551	97004850	+	0	NA	Intergenic	AluJr4|SINE|Alu	-18120	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
184799	chr5	111227151	111228350	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	3366	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
211361	chr7	104985771	104985930	+	0	NA	non-coding (NR_039981, exon 1 of 1)	non-coding (NR_039981, exon 1 of 1)	5315	NR_039981	100216546		NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA
90342	chr17	1186071	1186580	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	947	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
231136	chr9	129846321	129846580	+	0	NA	intron (NM_001008563, intron 1 of 25)	AluJr|SINE|Alu	10992	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
225321	chr9	34610371	34610530	+	0	NA	TTS (NM_148179)	TTS (NM_148179)	1647	NM_148178	138716		NM_148178	ENSG00000164967	RPP25L	C9orf23|bA296L22.5	ribonuclease P/MRP subunit p25 like	protein-coding
202165	chr6	155312801	155313130	+	0	NA	intron (NR_146725, intron 1 of 8)	intron (NR_146725, intron 1 of 8)	1519	NM_001350501	51106		NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
76899	chr15	77993401	77993600	+	0	NA	non-coding (NR_026998, exon 1 of 1)	non-coding (NR_026998, exon 1 of 1)	725	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
30241	chr10	75019101	75019630	+	0	NA	intron (NM_012330, intron 13 of 17).2	intron (NM_012330, intron 13 of 17).2	-2368	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
80526	chr16	2763851	2764280	+	0	NA	exon (NM_016333, exon 11 of 15)	exon (NM_016333, exon 11 of 15)	11427	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
212314	chr7	127250821	127251080	+	0	NA	intron (NM_001371083, intron 1 of 11)	intron (NM_001371083, intron 1 of 11)	1305	NM_001371088	2918		NM_000845	ENSG00000179603	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	glutamate metabotropic receptor 8	protein-coding
31983	chr10	100824421	100824830	+	0	NA	intron (NM_003987, intron 8 of 10)	intron (NM_003987, intron 8 of 10)	79043	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
15952	chr1	151836171	151837000	+	0	NA	Intergenic	Intergenic	-1692	NR_024237	100132111		NR_024237		C2CD4D-AS1	-	C2CD4D and THEM5 antisense RNA 1	ncRNA
69201	chr14	92675701	92676050	+	0	NA	intron (NM_024832, intron 7 of 9)	MamTip2|DNA|hAT-Tip100	72752	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
64264	chr14	23294371	23295330	+	0	NA	TTS (NM_001276318)	TTS (NM_001276318)	8009	NM_001276318	90673		NM_001276318	ENSG00000235194	PPP1R3E	-	protein phosphatase 1 regulatory subunit 3E	protein-coding
43990	chr11	94237951	94238050	+	0	NA	Intergenic	L1PA2|LINE|L1	-66739	NM_001199206	390243		NM_001080486	ENSG00000183560	IZUMO1R	FOLR4|FR-delta|Folbp3|JUNO	IZUMO1 receptor, JUNO	protein-coding
193163	chr6	29680371	29681330	+	0	NA	intron (NM_001109809, intron 1 of 4)	intron (NM_001109809, intron 1 of 4)	302	NM_001366333	346171		NM_001109809	ENSG00000204644	ZFP57	C6orf40|TNDM1|ZNF698|bA145L22|bA145L22.2	ZFP57 zinc finger protein	protein-coding
71740	chr15	20637451	20638080	+	0	NA	Intergenic	Intergenic	75416	NR_027411	729786		NR_027411	ENSG00000181984	GOLGA8CP	GOLGA8C	golgin A8 family member C, pseudogene	pseudo
161555	chr3	42663021	42663280	+	0	NA	intron (NM_145166, intron 4 of 5)	intron (NM_145166, intron 4 of 5)	-8762	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
208730	chr7	73431921	73432180	+	0	NA	Intergenic	MIRb|SINE|MIR	-1728	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
134231	chr2	134921151	134921450	+	0	NA	intron (NR_135468, intron 2 of 9)	intron (NR_135468, intron 2 of 9)	2478	NM_001320749	905		NM_001241	ENSG00000082258	CCNT2	CYCT2	cyclin T2	protein-coding
91006	chr17	2779501	2779900	+	0	NA	intron (NM_001330058, intron 1 of 24)	intron (NM_001330058, intron 1 of 24)	2942	NM_001330058	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
90708	chr17	1823051	1824630	+	0	NA	intron (NM_052928, intron 2 of 10)	MLT1K|LTR|ERVL-MaLR	6062	NM_052928	114826		NM_052928	ENSG00000186532	SMYD4	ZMYND21	SET and MYND domain containing 4	protein-coding
149807	chr21	34989701	34990230	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	49461	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
176990	chr4	105147561	105148430	+	0	NA	intron (NM_001127208, intron 1 of 10)	(TC)n|Simple_repeat|Simple_repeat	1119	NM_001127208	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
137065	chr2	190901171	190901850	+	0	NA	intron (NM_014905, intron 4 of 17)	Tigger2a|DNA|TcMar-Tigger	20689	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
78943	chr15	101275821	101278400	+	0	NA	intron (NM_203472, intron 1 of 6)	CpG	375	NM_018445	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
175045	chr4	52911671	52912030	+	0	NA	intron (NM_152540, intron 6 of 8)	LTR50|LTR|ERVL	49533	NM_023940	65997		NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding
27531	chr10	32316821	32317080	+	0	NA	intron (NR_168508, intron 1 of 12)	L1ME2z|LINE|L1	30208	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
174443	chr4	39702221	39702480	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSp|SINE|Alu	4214	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
82272	chr16	15153871	15155370	+	0	NA	TTS (NR_037466)	TTS (NR_037466)	382	NR_037466	100500852		NR_037466	ENSG00000264115	MIR3180-4	mir-3180-4	microRNA 3180-4	ncRNA
103278	chr17	77779771	77779930	+	0	NA	Intergenic	Intergenic	-51291	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
34126	chr10	128011391	128012250	+	0	NA	intron (NM_001323354, intron 1 of 19)	intron (NM_001323354, intron 1 of 19)	13673	NM_001323354	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
39837	chr11	62207971	62208300	+	0	NA	promoter-TSS (NM_002407)	promoter-TSS (NM_002407)	-538	NM_002407	4246		NM_002407	ENSG00000124939	SCGB2A1	LPHC|LPNC|MGB2|UGB3	secretoglobin family 2A member 1	protein-coding
57392	chr12	121819371	121819530	+	0	NA	exon (NM_001353345, exon 11 of 17)	exon (NM_001353345, exon 11 of 17)	15441	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
43965	chr11	93740641	93742530	+	0	NA	promoter-TSS (NM_001286068)	promoter-TSS (NM_001286068)	-9	NM_001286070	28970		NM_014039	ENSG00000182919	C11orf54	MEEP|PTD012|PTOD012	chromosome 11 open reading frame 54	protein-coding
236218	chrX	65700951	65701500	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	33571	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
20346	chr1	197902221	197903280	+	0	NA	exon (NM_001024594, exon 1 of 3)	exon (NM_001024594, exon 1 of 3)	120	NM_001024594	388722		NM_001024594	ENSG00000203724	C1orf53	-	chromosome 1 open reading frame 53	protein-coding
94419	chr17	29116971	29118150	+	0	NA	intron (NM_203318, intron 10 of 40)	(CAGCCTC)n|Simple_repeat|Simple_repeat	22829	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
133751	chr2	127524551	127524850	+	0	NA	intron (NM_017969, intron 1 of 13)	AluSq2|SINE|Alu	1789	NM_017969	55677		NM_017969	ENSG00000163166	IWS1	-	interacts with SUPT6H, CTD assembly factor 1	protein-coding
38780	chr11	47185771	47187630	+	0	NA	promoter-TSS (NM_001184975)	promoter-TSS (NM_001184975)	-266	NM_001184974	29763		NM_016223	ENSG00000165912	PACSIN3	SDPIII	protein kinase C and casein kinase substrate in neurons 3	protein-coding
99982	chr17	57613501	57613700	+	0	NA	intron (NM_170721, intron 7 of 9)	L1ME4c|LINE|L1	-5188	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
101298	chr17	66438721	66438980	+	0	NA	intron (NM_002737, intron 2 of 16)	THE1C|LTR|ERVL-MaLR	-21996	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
196529	chr6	43824251	43824550	+	0	NA	Intergenic	Intergenic	27933	NR_149142	285857		NR_149142	ENSG00000283215	LINC02537	-	long intergenic non-protein coding RNA 2537	ncRNA
161632	chr3	43294471	43294630	+	0	NA	intron (NM_001330750, intron 1 of 4)	Tigger4b|DNA|TcMar-Tigger	8010	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
159300	chr3	12991151	12991250	+	0	NA	intron (NM_001134382, intron 1 of 13)	L2c|LINE|L2	-4099	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
130239	chr2	84835451	84835750	+	0	NA	TTS (NM_001307978)	TTS (NM_001307978)	45484	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
61303	chr13	50248421	50249350	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	76867	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
200237	chr6	131803001	131803400	+	0	NA	Intergenic	Intergenic	-4820	NM_006208	5167		NM_006208	ENSG00000197594	ENPP1	ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding
62335	chr13	99078151	99078650	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	8294	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
63855	chr14	21536101	21536300	+	0	NA	intron (NR_111966, intron 1 of 2)	intron (NR_111966, intron 1 of 2)	921	NM_001291446	6297		NM_005407	ENSG00000165821	SALL2	COLB|HSAL2|Sal-2|ZNF795|p150(Sal2)	spalt like transcription factor 2	protein-coding
8096	chr1	39098301	39099200	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	14583	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
170128	chr3	183302221	183302480	+	0	NA	intron (NM_015078, intron 10 of 29)	intron (NM_015078, intron 10 of 29)	49097	NM_032047	84002		NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
30958	chr10	87817661	87819150	+	0	NA	promoter-TSS (NR_028492)	promoter-TSS (NR_028492)	92	NR_028492	142913		NM_152427	ENSG00000290782	CFL1P1	CFLP1	cofilin 1 pseudogene 1	pseudo
107352	chr18	45890751	45891050	+	0	NA	intron (NM_020964, intron 27 of 43)	intron (NM_020964, intron 27 of 43)	65225	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
84689	chr16	30777121	30777630	+	0	NA	Intergenic	Intergenic	9830	NM_001080417	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
89935	chr16	89734671	89735030	+	0	NA	intron (NR_110126, intron 9 of 10)	intron (NR_110126, intron 9 of 10)	13313	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
149034	chr21	14675851	14677000	+	0	NA	Intergenic	Intergenic	-33318	NM_001256579	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
82752	chr16	21417021	21417280	+	0	NA	intron (NM_130464, intron 2 of 12)	intron (NM_130464, intron 2 of 12)	8228	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
155815	chr22	39321501	39322180	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2217	NM_001033853	6122		NM_000967	ENSG00000100316	RPL3	ASC-1|L3|TARBP-B|uL3	ribosomal protein L3	protein-coding
115895	chr19	16583851	16585550	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-12285	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
149301	chr21	28836271	28837080	+	0	NA	Intergenic	L1PB1|LINE|L1	48692	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
5516	chr1	25792651	25792950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7393	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
234665	chrX	20145851	20146150	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4162	NM_001412	1964		NM_001412	ENSG00000173674	EIF1AX	EIF1A|EIF1AP1|EIF4C|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A X-linked	protein-coding
169623	chr3	171270601	171271130	+	0	NA	intron (NM_001161560, intron 2 of 31)	MIR|SINE|MIR	-164106	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
186009	chr5	133957521	133958180	+	0	NA	intron (NM_020199, intron 2 of 2)	MIR3|SINE|MIR	10775	NM_020199	56951		NM_020199	ENSG00000113583	C5orf15	HTGN29|KCT2	chromosome 5 open reading frame 15	protein-coding
152718	chr22	21655221	21655480	+	0	NA	intron (NR_169731, intron 3 of 3)	AluSg7|SINE|Alu	2046	NR_029845	406920		NR_029845	ENSG00000283871	MIR130B	MIRN130B|mir-130b	microRNA 130b	ncRNA
112798	chr19	7490301	7490550	+	0	NA	Intergenic	AluY|SINE|Alu	-1025	NM_001300881	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
213906	chr7	142495901	142496100	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	21473	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
178332	chr4	145735401	145735680	+	0	NA	Intergenic	Intergenic	55394	NM_001080531	646603		NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
29986	chr10	73743851	73744950	+	0	NA	promoter-TSS (NM_004922)	promoter-TSS (NM_004922)	28	NM_198597	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
222429	chr8	134711951	134713880	+	0	NA	non-coding (NR_110323, exon 1 of 17)	non-coding (NR_110323, exon 1 of 17)	116	NM_020863	57623		NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
99791	chr17	51200271	51201050	+	0	NA	intron (NM_017643, intron 12 of 16)	AluJb|SINE|Alu	33938	NM_001018138	4831		NM_002512	ENSG00000243678	NME2	NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF	NME/NM23 nucleoside diphosphate kinase 2	protein-coding
234801	chrX	24021071	24021730	+	0	NA	intron (NM_030624, intron 2 of 3)	L2a|LINE|L2	5786	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
93471	chr17	18794901	18795100	+	0	NA	intron (NM_001316924, intron 3 of 5)	L2c|LINE|L2	5965	NM_001316920	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
223187	chr8	143564851	143564950	+	0	NA	Intergenic	Intergenic	6554	NM_024736	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
89457	chr16	89019971	89020680	+	0	NA	Intergenic	Intergenic	-43118	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
5442	chr1	25577201	25577600	+	0	NA	Intergenic	Intergenic	33794	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
180791	chr5	32276371	32277200	+	0	NA	intron (NM_001294344, intron 1 of 13)	intron (NM_001294344, intron 1 of 13)	36154	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
8406	chr1	40402621	40403100	+	0	NA	intron (NM_001198980, intron 1 of 9)	intron (NM_001198980, intron 1 of 9)	6060	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
15617	chr1	150619101	150619300	+	0	NA	Intergenic	AluSz|SINE|Alu	9933	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
169724	chr3	172173821	172174280	+	0	NA	intron (NM_022763, intron 3 of 25)	intron (NM_022763, intron 3 of 25)	133519	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
211867	chr7	111019221	111019680	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-71556	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
34058	chr10	124774071	124774230	+	0	NA	intron (NM_212554, intron 4 of 6)	AluY|SINE|Alu	17737	NM_212554	399818		NM_212554	ENSG00000203791	EEF1AKMT2	C10orf138|Efm4|METTL10	EEF1A lysine methyltransferase 2	protein-coding
180460	chr5	10682001	10682400	+	0	NA	intron (NM_001291963, intron 2 of 2)	intron (NM_001291963, intron 2 of 2)	79034	NM_004394	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
213656	chr7	139777401	139778800	+	0	NA	promoter-TSS (NM_001166254)	promoter-TSS (NM_001166254)	-102	NM_001113239	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
225827	chr9	37905971	37906330	+	0	NA	Intergenic	L2a|LINE|L2	-1797	NR_024872	92014		NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
32874	chr10	110103801	110104350	+	0	NA	intron (NM_016824, intron 2 of 14)	MLT1F1-int|LTR|ERVL-MaLR	47905	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
100034	chr17	57999351	58000080	+	0	NA	Intergenic	Intergenic	7531	NM_001078166	6426		NM_006924	ENSG00000136450	SRSF1	ASF|NEDFBA|SF2|SF2p33|SFRS1|SRp30a	serine and arginine rich splicing factor 1	protein-coding
113150	chr19	8341371	8341530	+	0	NA	intron (NM_198471, intron 1 of 10)	AluSx|SINE|Alu	1812	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
100301	chr17	59786381	59787550	+	0	NA	intron (NM_030938, intron 7 of 11)	intron (NM_030938, intron 7 of 11)	-54301	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
163014	chr3	49792671	49793280	+	0	NA	exon (NM_001007540, exon 14 of 19)	exon (NM_001007540, exon 14 of 19)	-6433	NM_153273	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
208366	chr7	66630071	66630230	+	0	NA	intron (NM_153033, intron 1 of 3)	AluJb|SINE|Alu	1269	NM_153033	154881		NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
60298	chr13	40638721	40639000	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	27781	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
81911	chr16	11736271	11736630	+	0	NA	intron (NR_136674, intron 1 of 8)	intron (NR_136674, intron 1 of 8)	6407	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
79877	chr16	1530621	1530880	+	0	NA	intron (NM_001256541, intron 1 of 3)	intron (NM_001256541, intron 1 of 3)	2072	NM_001256541	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
85919	chr16	57088971	57089850	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-3173	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
23437	chr1	228412451	228412750	+	0	NA	intron (NM_001134855, intron 3 of 5)	AluJo|SINE|Alu	4261	NM_016102	51127		NM_016102	ENSG00000162931	TRIM17	RBCC|RNF16|terf	tripartite motif containing 17	protein-coding
49576	chr12	26953651	26953750	+	0	NA	intron (NM_001171888, intron 1 of 4)	intron (NM_001171888, intron 1 of 4)	15230	NM_015633	26127		NM_015633	ENSG00000111790	FGFR1OP2	HSPC123-like|WIT3.0	FGFR1 oncogene partner 2	protein-coding
207603	chr7	44973621	44974330	+	0	NA	intron (NM_033054, intron 5 of 21)	intron (NM_033054, intron 5 of 21)	5040	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
6138	chr1	27372771	27373150	+	0	NA	intron (NM_173452, intron 4 of 6)	L2a|LINE|L2	1864	NM_003665	8547		NM_003665	ENSG00000142748	FCN3	FCNH|HAKA1	ficolin 3	protein-coding
112766	chr19	7426951	7427680	+	0	NA	intron (NM_015318, intron 1 of 20)	intron (NM_015318, intron 1 of 20)	-12373	NM_001130955	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
163387	chr3	50498971	50499130	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	4584	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
140590	chr2	233379921	233380900	+	0	NA	intron (NM_152879, intron 1 of 29)	intron (NM_152879, intron 1 of 29)	-7744	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
220425	chr8	100290001	100290200	+	0	NA	intron (NM_001280539, intron 2 of 10)	L1ME3A|LINE|L1	12093	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
142416	chr20	3893471	3894450	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluSq|SINE|Alu	4144	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
204161	chr7	2408421	2408950	+	0	NA	intron (NM_018641, intron 1 of 1)	HAL1|LINE|L1	5074	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
9175	chr1	45593321	45593580	+	0	NA	intron (NM_001195193, intron 2 of 12)	AluSx1|SINE|Alu	9409	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
106694	chr18	23313571	23313730	+	0	NA	intron (NR_148385, intron 12 of 13)	intron (NR_148385, intron 12 of 13)	124311	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
173789	chr4	17616171	17616930	+	0	NA	intron (NM_025205, intron 1 of 3)	L2|LINE|L2	1909	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
54795	chr12	94305271	94305630	+	0	NA	TTS (NM_001346457)	TTS (NM_001346457)	42831	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
47494	chr12	3978171	3978330	+	0	NA	Intergenic	Intergenic	-104802	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
46558	chr11	128486571	128487350	+	0	NA	intron (NM_001143820, intron 5 of 9)	intron (NM_001143820, intron 5 of 9)	35350	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
110836	chr19	2503321	2504300	+	0	NA	Intergenic	Intergenic	27683	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
225545	chr9	35828351	35829880	+	0	NA	promoter-TSS (NM_001012446)	promoter-TSS (NM_001012446)	-110	NM_001042589	51754		NM_016446	ENSG00000137103	TMEM8B	C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6|NGX6a	transmembrane protein 8B	protein-coding
207953	chr7	54758651	54760030	+	0	NA	promoter-TSS (NM_014302)	promoter-TSS (NM_014302)	27	NR_110040	100996654		NR_110040	ENSG00000234707	SEC61G-DT	-	SEC61G divergent transcript	ncRNA
69886	chr14	99348621	99349780	+	0	NA	Intergenic	Intergenic	-77003	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
70789	chr14	103528821	103529750	+	0	NA	promoter-TSS (NM_152307)	promoter-TSS (NM_152307)	89	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
50119	chr12	44972951	44973050	+	0	NA	Intergenic	Intergenic	-59072	NM_001145110	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
182518	chr5	65191701	65191980	+	0	NA	intron (NM_197941, intron 21 of 24)	intron (NM_197941, intron 21 of 24)	290080	NR_135689	11174		NM_014273	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein-coding
200010	chr6	129370321	129370680	+	0	NA	intron (NM_000426, intron 34 of 64)	intron (NM_000426, intron 34 of 64)	339677	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
208398	chr7	66692901	66693100	+	0	NA	intron (NM_001367745, intron 1 of 7)	intron (NM_001367745, intron 1 of 7)	10834	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
139403	chr2	222319901	222320580	+	0	NA	promoter-TSS (NR_136641)	promoter-TSS (NR_136641)	-421	NR_136640	440934		NR_136638	ENSG00000291155	CT75	-	cancer/testis associated transcript 75	ncRNA
110511	chr19	2063651	2063950	+	0	NA	Intergenic	AluSx|SINE|Alu	-12556	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
87462	chr16	71467721	71468130	+	0	NA	Intergenic	Intergenic	-5678	NM_001304493	7571		NM_145911	ENSG00000167377	ZNF23	KOX16|ZNF359|ZNF612|Zfp612	zinc finger protein 23	protein-coding
150591	chr21	43325851	43326150	+	0	NA	intron (NR_103713, intron 2 of 2)	intron (NR_103713, intron 2 of 2)	6039	NR_103713	100126693		NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
57022	chr12	120648651	120650050	+	0	NA	promoter-TSS (NM_031205)	promoter-TSS (NM_031205)	-927	NM_004276	9478		NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
94843	chr17	31491351	31491950	+	0	NA	intron (NM_001346748, intron 1 of 12)	L2a|LINE|L2	3542	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
54760	chr12	94100271	94100730	+	0	NA	Intergenic	Intergenic	-48077	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
100978	chr17	64539651	64539750	+	0	NA	Intergenic	Intergenic	32723	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
10087	chr1	58861371	58861790	+	0	NA	intron (NR_108106, intron 1 of 1)	MIRc|SINE|MIR	76429	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
111109	chr19	3209271	3210000	+	0	NA	TTS (NM_001321463)	TTS (NM_001321463)	-15026	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
109590	chr19	916601	918180	+	0	NA	promoter-TSS (NM_032551)	promoter-TSS (NM_032551)	57	NM_032551	84634		NM_032551	ENSG00000116014	KISS1R	AXOR12|CPPB1|GPR54|HH8|HOT7T175|KISS-1R	KISS1 receptor	protein-coding
101266	chr17	66330601	66332280	+	0	NA	intron (NM_002737, intron 2 of 16)	MLT1I|LTR|ERVL-MaLR	28827	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
193310	chr6	30102801	30103930	+	0	NA	non-coding (NR_134871, exon 8 of 8)	non-coding (NR_134871, exon 8 of 8)	-1875	NR_126470	104533120		NR_126470	ENSG00000231226	TRIM31-AS1	-	TRIM31 antisense RNA 1	ncRNA
35280	chr11	936671	937030	+	0	NA	intron (NR_144509, intron 1 of 20)	intron (NR_144509, intron 1 of 20)	10980	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
132235	chr2	102359551	102359850	+	0	NA	intron (NM_001371424, intron 1 of 8)	L1M5|LINE|L1	3417	NM_001282399	8809		NM_003855	ENSG00000115604	IL18R1	CD218a|CDw218a|IL-18R-alpha|IL-18Ralpha|IL-1Rrp|IL18RA|IL18Ralpha2|IL1RRP	interleukin 18 receptor 1	protein-coding
219091	chr8	65843951	65844250	+	0	NA	Intergenic	MLT2C2|LTR|ERVL	-2036	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
67641	chr14	73063471	73064280	+	0	NA	intron (NM_021239, intron 1 of 18)	L2a|LINE|L2	5341	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
106793	chr18	23884701	23885130	+	0	NA	intron (NM_198129, intron 41 of 74)	G-rich|Low_complexity|Low_complexity	11895	NM_001127718	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
148242	chr20	63638451	63640400	+	0	NA	TTS (NM_015894)	TTS (NM_015894)	12190	NR_132418	100505771		NR_132417	ENSG00000232442	MHENCR	-	melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489	ncRNA
207704	chr7	45927771	45928000	+	0	NA	Intergenic	L1ME1|LINE|L1	-6613	NM_000598	3486		NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP-3|IBP3|IGFBP-3	insulin like growth factor binding protein 3	protein-coding
150417	chr21	42402821	42403080	+	0	NA	promoter-TSS (NM_018961)	promoter-TSS (NM_018961)	-952	NM_018961	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
110497	chr19	2045121	2046700	+	0	NA	intron (NM_199054, intron 5 of 13)	intron (NM_199054, intron 5 of 13)	5334	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
218635	chr8	56218771	56218930	+	0	NA	TTS (NM_001011669)	TTS (NM_001011669)	7061	NM_001011671	79145		NM_024300	ENSG00000170791	CHCHD7	COX23	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding
211438	chr7	105068771	105069280	+	0	NA	intron (NM_182931, intron 6 of 26)	L1MD1|LINE|L1	54820	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
33673	chr10	119871401	119873950	+	0	NA	5' UTR (NM_001256378, exon 1 of 16)	5' UTR (NM_001256378, exon 1 of 16)	168	NM_001256378	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
76525	chr15	75067101	75067800	+	0	NA	Intergenic	HERVP71A-int|LTR|ERV1	24164	NM_001301105	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
186303	chr5	134572051	134572550	+	0	NA	intron (NM_001289985, intron 9 of 11)	intron (NM_001289985, intron 9 of 11)	46192	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
176679	chr4	100549171	100549630	+	0	NA	Intergenic	AluJo|SINE|Alu	-31378	NM_016242	51705		NM_016242	ENSG00000164035	EMCN	EMCN2|MUC14	endomucin	protein-coding
195058	chr6	35500501	35500700	+	0	NA	intron (NM_001289395, intron 12 of 13)	intron (NM_001289395, intron 12 of 13)	-3521	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
434	chr1	1106601	1106800	+	0	NA	intron (NM_017891, intron 1 of 9)	LTR12C|LTR|ERV1	9389	NM_017891	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
141943	chr20	1272701	1273300	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	6706	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
173617	chr4	11424071	11424230	+	0	NA	intron (NM_005114, intron 1 of 1)	MER102b|DNA|hAT-Charlie	4744	NM_005114	9957		NM_005114	ENSG00000002587	HS3ST1	3OST|3OST1	heparan sulfate-glucosamine 3-sulfotransferase 1	protein-coding
122444	chr19	49486911	49488600	+	0	NA	intron (NM_012423, intron 1 of 7)	intron (NM_012423, intron 1 of 7)	147	NM_012423	23521		NM_012423	ENSG00000142541	RPL13A	L13A|TSTA1|uL13	ribosomal protein L13a	protein-coding
199146	chr6	111724351	111724980	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	34466	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
23955	chr1	235134751	235135050	+	0	NA	intron (NR_144490, intron 9 of 9)	AluSp|SINE|Alu	-6063	NM_014765	9804		NM_014765	ENSG00000173726	TOMM20	MAS20|MOM19|TOM20	translocase of outer mitochondrial membrane 20	protein-coding
194202	chr6	32174571	32174730	+	0	NA	intron (NM_032741, intron 1 of 6).4	intron (NM_032741, intron 1 of 6).4	1434	NM_006411	10554		NM_006411	ENSG00000204310	AGPAT1	1-AGPAT1|G15|LPAAT-alpha|LPAATA|LPLAT1	1-acylglycerol-3-phosphate O-acyltransferase 1	protein-coding
14987	chr1	148059951	148060250	+	0	NA	intron (NR_146087, intron 1 of 7)	tRNA-Asn-AAC|tRNA|tRNA	10798	NR_146087	728920		NR_146087		PDE4DIPP1	PDE4DIP1	PDE4DIP pseudogene 1	pseudo
149978	chr21	36702101	36702300	+	0	NA	intron (NM_005069, intron 1 of 10)	intron (NM_005069, intron 1 of 10)	3085	NM_009586	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
149413	chr21	31186851	31187600	+	0	NA	intron (NM_001353694, intron 13 of 27)	intron (NM_001353694, intron 13 of 27)	-26285	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
206061	chr7	27162521	27163180	+	0	NA	non-coding (NR_037940, exon 3 of 3)	non-coding (NR_037940, exon 3 of 3)	2687	NM_152739	3205		NM_002142	ENSG00000078399	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding
116560	chr19	18228201	18228400	+	0	NA	intron (NM_001330172, intron 2 of 15)	intron (NM_001330172, intron 2 of 15)	-1862	NM_001369701	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
119763	chr19	41291801	41292000	+	0	NA	intron (NM_144732, intron 7 of 14)	AluJr|SINE|Alu	-18272	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
220874	chr8	103418321	103418630	+	0	NA	intron (NM_015420, intron 1 of 10)	AluJr|SINE|Alu	3089	NM_015420	25879		NM_015420	ENSG00000164934	DCAF13	GM83|HSPC064|Sof1|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
79285	chr16	536721	537030	+	0	NA	intron (NM_005632, intron 3 of 13)	intron (NM_005632, intron 3 of 13)	1559	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	ncRNA
235198	chrX	41344971	41345200	+	0	NA	intron (NM_001193417, intron 9 of 15)	intron (NM_001193417, intron 9 of 15)	10919	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
53761	chr12	68670721	68671630	+	0	NA	3' UTR (NM_015646, exon 8 of 8)	3' UTR (NM_015646, exon 8 of 8)	15684	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
45757	chr11	119221021	119221280	+	0	NA	intron (NM_005188, intron 1 of 15)	AluSz|SINE|Alu	14811	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
37534	chr11	18643071	18643330	+	0	NA	Intergenic	Intergenic	-8858	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
33736	chr10	122381751	122382250	+	0	NA	intron (NM_001377254, intron 2 of 11)	L2a|LINE|L2	-4069	NM_001195608	59338		NM_021622	ENSG00000107679	PLEKHA1	TAPP1	pleckstrin homology domain containing A1	protein-coding
198075	chr6	90239501	90239850	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	57168	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
239281	chrY	13754071	13754230	+	0	NA	Intergenic	AluSx1|SINE|Alu	50251	NM_004202	9087		NM_004202	ENSG00000154620	TMSB4Y	TB4Y	thymosin beta 4 Y-linked	protein-coding
147684	chr20	62310871	62311030	+	0	NA	exon (NM_005560, exon 74 of 80)	exon (NM_005560, exon 74 of 80)	7953	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
203145	chr6	166958871	166960150	+	0	NA	Intergenic	Intergenic	-2960	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
61212	chr13	49506221	49506480	+	0	NA	intron (NR_135323, intron 2 of 11)	AluJr|SINE|Alu	9294	NM_001040444	51131		NM_001040443	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
205806	chr7	24384571	24384930	+	0	NA	Intergenic	Intergenic	100560	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
154834	chr22	37068801	37069700	+	0	NA	exon (NM_001289000, exon 16 of 19)	exon (NM_001289000, exon 16 of 19)	17514	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
152152	chr22	20014371	20015030	+	0	NA	intron (NM_001670, intron 1 of 19)	intron (NM_001670, intron 1 of 19)	2123	NM_001670	421		NM_001670	ENSG00000099889	ARVCF	-	ARVCF delta catenin family member	protein-coding
116689	chr19	18422171	18422330	+	0	NA	intron (NM_032627, intron 1 of 17)	intron (NM_032627, intron 1 of 17)	2852	NM_032627	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
74688	chr15	62124421	62124880	+	0	NA	Intergenic	Intergenic	40635	NM_001007595	388125		NM_001007595	ENSG00000205502	C2CD4B	FAM148B|NLF2	C2 calcium dependent domain containing 4B	protein-coding
22669	chr1	223811751	223812480	+	0	NA	intron (NM_001031685, intron 3 of 17)	intron (NM_001031685, intron 3 of 17)	33832	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
145394	chr20	41408371	41408930	+	0	NA	intron (NM_032221, intron 36 of 36)	intron (NM_032221, intron 36 of 36)	-41832	NM_052846	90187		NM_052846	ENSG00000183798	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
129855	chr2	72922171	72922530	+	0	NA	intron (NM_004097, intron 1 of 2)	intron (NM_004097, intron 1 of 2)	4831	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
28267	chr10	45766021	45766280	+	0	NA	intron (NM_001367406, intron 19 of 29)	MER39|LTR|ERV1	38884	NM_001367415	253725		NM_015262	ENSG00000172661	WASHC2C	FAM21A|FAM21C|VPEF	WASH complex subunit 2C	protein-coding
4625	chr1	22110071	22110430	+	0	NA	Intergenic	AluJo|SINE|Alu	32847	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
125732	chr2	20653801	20654000	+	0	NA	Intergenic	Intergenic	-2802	NM_022460	64342		NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
132406	chr2	105798301	105799200	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	-53097	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
123008	chr19	51020921	51021400	+	0	NA	promoter-TSS (NM_001077500)	promoter-TSS (NM_001077500)	-985	NM_001077500	5655		NM_002776	ENSG00000129451	KLK10	NES1|PRSSL1	kallikrein related peptidase 10	protein-coding
100413	chr17	60527371	60527530	+	0	NA	Intergenic	AluY|SINE|Alu	-1208	NM_006380	10513		NM_006380	ENSG00000062725	APPBP2	APP-BP2|HS.84084|PAT1	amyloid beta precursor protein binding protein 2	protein-coding
147783	chr20	62602451	62604550	+	0	NA	Intergenic	Intergenic	38588	NR_029676	406923		NR_029676	ENSG00000284508	MIR133A2	MIRN133A2|mir-133a-2	microRNA 133a-2	ncRNA
67079	chr14	68135171	68135350	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	311668	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
47385	chr12	2732301	2732500	+	0	NA	Intergenic	Intergenic	-41243	NR_045725	100652846		NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	ncRNA
239000	chrX	156008701	156009100	+	0	NA	intron (NM_002186, intron 8 of 8)	(GT)n|Simple_repeat|Simple_repeat	7930	NR_138048	100128260		NR_138048	ENSG00000185203	WASIR1	NCRNA00286B	WASH and IL9R antisense RNA 1	ncRNA
159138	chr3	12650001	12650600	+	0	NA	intron (NM_001354691, intron 1 of 16)	AluJb|SINE|Alu	13208	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
113779	chr19	10545801	10546200	+	0	NA	intron (NR_104025, intron 3 of 8)	FRAM|SINE|Alu	2096	NM_001281504	84971		NM_032885	ENSG00000130734	ATG4D	APG4-D|APG4D|AUTL4|HsAPG4D	autophagy related 4D cysteine peptidase	protein-coding
124540	chr2	306721	306980	+	0	NA	Intergenic	CpG	-9434	NR_146953	105373350		NR_146953		LINC01865	-	long intergenic non-protein coding RNA 1865	ncRNA
146467	chr20	49710921	49711480	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	2678	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
119664	chr19	40831451	40831550	+	0	NA	Intergenic	L1ME4b|LINE|L1	18947	NM_000762	1548		NM_000762	ENSG00000255974	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450 family 2 subfamily A member 6	protein-coding
20244	chr1	193438951	193439050	+	0	NA	Intergenic	Intergenic	134255	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
156797	chr22	41914421	41915980	+	0	NA	promoter-TSS (NM_001353439)	promoter-TSS (NM_001353439)	-105	NM_001207020	440829		NM_001207020	ENSG00000234965	SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
116717	chr19	18449921	18450250	+	0	NA	intron (NM_006532, intron 8 of 11)	intron (NM_006532, intron 8 of 11)	-11952	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
163433	chr3	50580971	50581750	+	0	NA	3' UTR (NM_001377425, exon 11 of 11)	3' UTR (NM_001377425, exon 11 of 11)	-10333	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
217872	chr8	37851371	37852080	+	0	NA	Intergenic	Intergenic	-1864	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
2208	chr1	8700871	8702100	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	116155	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
12770	chr1	109639851	109640830	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-15736	NR_024538	2948		NM_000850	ENSG00000168765	GSTM4	GSTM4-4|GTM4	glutathione S-transferase mu 4	protein-coding
40321	chr11	63907851	63908150	+	0	NA	intron (NM_001163296, intron 16 of 16)	intron (NM_001163296, intron 16 of 16)	9164	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
29011	chr10	63517271	63517830	+	0	NA	intron (NM_001322258, intron 1 of 24)	intron (NM_001322258, intron 1 of 24)	-3851	NM_001001330	221035		NM_001001330	ENSG00000165476	REEP3	C10orf74|Yip2b	receptor accessory protein 3	protein-coding
122320	chr19	49133201	49134750	+	0	NA	intron (NR_103842, intron 10 of 28)	intron (NR_103842, intron 10 of 28)	14431	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
66489	chr14	61666901	61667600	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-28263	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
230484	chr9	128224701	128225300	+	0	NA	intron (NM_001374269, intron 10 of 21)	MIRc|SINE|MIR	19830	NR_029619	406978		NR_029619	ENSG00000207581	MIR199B	MIRN199B|mir-199b	microRNA 199b	ncRNA
103995	chr17	80065151	80065250	+	0	NA	intron (NM_001330508, intron 9 of 10)	(TCCTCC)n|Simple_repeat|Simple_repeat	28558	NM_017950	55036		NM_017950	ENSG00000141519	CCDC40	CFAP172|CILD15|FAP172	coiled-coil domain 40 molecular ruler complex subunit	protein-coding
58337	chr12	131511271	131511780	+	0	NA	Intergenic	Intergenic	136596	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
46023	chr11	122633201	122633630	+	0	NA	Intergenic	Intergenic	-22307	NM_001363365	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
129961	chr2	73968151	73968650	+	0	NA	intron (NR_104030, intron 1 of 1)	L2c|LINE|L2	13039	NR_104030	100874048		NR_104029		DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
13584	chr1	116232901	116233380	+	0	NA	Intergenic	L2a|LINE|L2	121385	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
17786	chr1	159214201	159214430	+	0	NA	Intergenic	Intergenic	9440	NM_001122951	2532		NM_002036	ENSG00000213088	ACKR1	CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1	atypical chemokine receptor 1 (Duffy blood group)	protein-coding
177968	chr4	139030271	139031230	+	0	NA	intron (NM_012118, intron 1 of 2)	intron (NM_012118, intron 1 of 2)	14969	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
64366	chr14	24124271	24124500	+	0	NA	non-coding (NR_028100, exon 14 of 14)	non-coding (NR_028100, exon 14 of 14)	-7081	NM_203402	161247		NM_203402	ENSG00000139914	FITM1	FIT1	fat storage inducing transmembrane protein 1	protein-coding
135948	chr2	171965701	171965930	+	0	NA	exon (NM_003642, exon 6 of 11)	exon (NM_003642, exon 6 of 11)	-34138	NM_001322279	254042		NM_199227	ENSG00000172878	METAP1D	MAP 1D|MAP1D|MetAP 1D|Metap1l	methionyl aminopeptidase type 1D, mitochondrial	protein-coding
192143	chr6	16787171	16787580	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-25885	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
34523	chr10	132736001	132736200	+	0	NA	intron (NM_005539, intron 9 of 15)	intron (NM_005539, intron 9 of 15)	50047	NM_177400	84504		NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B|SPAX8	NK6 homeobox 2	protein-coding
204622	chr7	5377101	5377750	+	0	NA	exon (NM_001080495, exon 7 of 30)	exon (NM_001080495, exon 7 of 30)	46121	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
49008	chr12	14220901	14221980	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-144192	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
75918	chr15	70093371	70093980	+	0	NA	intron (NM_001282982, intron 2 of 17)	intron (NM_001282982, intron 2 of 17)	1114	NM_001282982	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
139311	chr2	219533551	219533850	+	0	NA	intron (NM_018674, intron 5 of 9)	L2b|LINE|L2	9397	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
192392	chr6	24768971	24769330	+	0	NA	Intergenic	AluSc|SINE|Alu	-5787	NM_001251990	51053		NM_015895	ENSG00000112312	GMNN	Gem|MGORS6	geminin DNA replication inhibitor	protein-coding
81273	chr16	4645801	4646030	+	0	NA	intron (NM_001142291, intron 1 of 15)	intron (NM_001142291, intron 1 of 15)	21089	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
124273	chr19	57803451	57804150	+	0	NA	Intergenic	Intergenic	11113	NM_024762	79818		NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
61724	chr13	74122471	74122830	+	0	NA	intron (NM_007249, intron 1 of 7)	L1MEf|LINE|L1	11279	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
32982	chr10	110509351	110509680	+	0	NA	intron (NM_004419, intron 3 of 3)	intron (NM_004419, intron 3 of 3)	11608	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
122577	chr19	49683871	49684030	+	0	NA	exon (NM_198318, exon 5 of 10)	exon (NM_198318, exon 5 of 10)	1833	NR_049811	100847074		NR_049811	ENSG00000274306	MIR5088	mir-5088	microRNA 5088	ncRNA
81086	chr16	4347521	4348230	+	0	NA	intron (NM_001201479, intron 27 of 30)	intron (NM_001201479, intron 27 of 30)	3446	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
199882	chr6	127819221	127819680	+	0	NA	intron (NM_001010923, intron 3 of 5).2	L1MCa|LINE|L1	35738	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
168844	chr3	152269401	152270560	+	0	NA	promoter-TSS (NR_027038)	promoter-TSS (NR_027038)	-354	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
184109	chr5	94026051	94026350	+	0	NA	intron (NR_028080, intron 3 of 8)	LTR28C|LTR|ERV1	85463	NM_032042	83989		NM_032042	ENSG00000113391	ARB2A	C5orf21|FAM172A|Toupee	ARB2 cotranscriptional regulator A	protein-coding
80788	chr16	3236701	3236900	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-1642	NM_198087	7752		NM_003454	ENSG00000010539	ZNF200	-	zinc finger protein 200	protein-coding
93159	chr17	17770001	17770400	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	-3898	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
186597	chr5	138509851	138509950	+	0	NA	intron (NM_001291974, intron 9 of 10)	AluSq2|SINE|Alu	31811	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
162626	chr3	48736801	48737330	+	0	NA	Intergenic	L1ME3B|LINE|L1	-19787	NM_001190316	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
73256	chr15	41822971	41824030	+	0	NA	exon (NM_001128608, exon 30 of 32)	exon (NM_001128608, exon 30 of 32)	-4585	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
177996	chr4	139288801	139289230	+	0	NA	TTS (NM_001184990)	TTS (NM_001184990)	-8790	NM_032623	84709		NM_032623	ENSG00000137463	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria localized glutamic acid rich protein	protein-coding
115207	chr19	14478051	14478800	+	0	NA	exon (NM_005716, exon 9 of 9)	exon (NM_005716, exon 9 of 9)	-3071	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
233641	chrX	727951	728330	+	0	NA	Intergenic	Intergenic	103796	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
235166	chrX	41146121	41146450	+	0	NA	intron (NM_001039590, intron 11 of 44)	intron (NM_001039590, intron 11 of 44)	60840	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
214890	chr7	151414051	151414700	+	0	NA	Intergenic	L1MB7|LINE|L1	-3663	NM_001284261	349136		NM_198285	ENSG00000187260	WDR86	-	WD repeat domain 86	protein-coding
80123	chr16	2036751	2037200	+	0	NA	exon (NM_001252073, exon 4 of 6)	exon (NM_001252073, exon 4 of 6)	3681	NM_001252075	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
21035	chr1	203026021	203027530	+	0	NA	intron (NM_001304332, intron 1 of 28)	CpG	284	NM_001304332	8497		NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding
215331	chr7	157360271	157360630	+	0	NA	intron (NM_001363676, intron 2 of 6)	intron (NM_001363676, intron 2 of 6)	23446	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
135660	chr2	168454801	168455330	+	0	NA	Intergenic	L2a|LINE|L2	-1207	NM_203463	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
177640	chr4	121216121	121217230	+	0	NA	promoter-TSS (NM_001128843)	promoter-TSS (NM_001128843)	-48	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
99874	chr17	56600551	56600650	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	6901	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
15407	chr1	150241071	150241430	+	0	NA	Intergenic	AluSx|SINE|Alu	-5138	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
69530	chr14	96393571	96394300	+	0	NA	intron (NM_001350891, intron 1 of 16)	AluSx1|SINE|Alu	1807	NM_001350888	122481		NM_152327	ENSG00000140057	AK7	AK 7|CFAP75|FAP75|SPGF27	adenylate kinase 7	protein-coding
6059	chr1	27139871	27140030	+	0	NA	intron (NM_003047, intron 1 of 11)	AluSz|SINE|Alu	15175	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
215004	chr7	152372271	152372430	+	0	NA	intron (NM_170606, intron 1 of 58)	AluSx1|SINE|Alu	63653	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
186411	chr5	135508551	135508650	+	0	NA	Intergenic	Intergenic	27364	NM_006161	4762		NM_006161	ENSG00000181965	NEUROG1	AKA|CCDDRD|Math4C|NEUROD3|bHLHa6|ngn1	neurogenin 1	protein-coding
225051	chr9	33169601	33170100	+	0	NA	intron (NR_108108, intron 1 of 3)	L2a|LINE|L2	1991	NR_108108	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
22003	chr1	209782921	209783480	+	0	NA	TTS (NM_001320144)	TTS (NM_001320144)	1359	NM_152485	148304		NM_152485	ENSG00000162757	C1orf74	URLC4	chromosome 1 open reading frame 74	protein-coding
146838	chr20	51416371	51417300	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	36142	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
48777	chr12	11648451	11650630	+	0	NA	promoter-TSS (NM_001987)	promoter-TSS (NM_001987)	-134	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
94470	chr17	29265901	29266300	+	0	NA	intron (NM_020772, intron 3 of 3)	AluSq2|SINE|Alu	19241	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
55892	chr12	109720771	109721580	+	0	NA	intron (NM_032829, intron 1 of 2)	MIRb|SINE|MIR	7350	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
165916	chr3	107206251	107206350	+	0	NA	intron (NR_028303, intron 1 of 3)	intron (NR_028303, intron 1 of 3)	34338	NR_028303	100302640		NR_028303		LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
14693	chr1	145885171	145886450	+	0	NA	promoter-TSS (NM_001280799)	promoter-TSS (NM_001280799)	56	NM_144698	148741		NM_144698	ENSG00000198483	ANKRD35	-	ankyrin repeat domain 35	protein-coding
58906	chr13	19663951	19664250	+	0	NA	intron (NM_017520, intron 9 of 13)	AluJr|SINE|Alu	30441	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
205587	chr7	21429921	21430580	+	0	NA	exon (NM_001326543, exon 3 of 6)	exon (NM_001326543, exon 3 of 6)	2167	NM_001326543	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
197347	chr6	73447401	73447730	+	0	NA	intron (NM_138441, intron 1 of 4)	AluSq2|SINE|Alu	4732	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
55923	chr12	109863051	109863550	+	0	NA	intron (NM_016433, intron 1 of 4)	L2b|LINE|L2	17241	NM_016433	51228		NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
135589	chr2	166375801	166376230	+	0	NA	promoter-TSS (NM_002977)	promoter-TSS (NM_002977)	-28	NM_002977	6335		NM_002977	ENSG00000169432	SCN9A	ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP	sodium voltage-gated channel alpha subunit 9	protein-coding
27200	chr10	28572151	28572580	+	0	NA	intron (NM_100486, intron 3 of 12)	L2c|LINE|L2	39247	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
32791	chr10	105838021	105838500	+	0	NA	Intergenic	Intergenic	-17927	NR_120625	101927549		NR_120625		LINC02627	-	long intergenic non-protein coding RNA 2627	ncRNA
197223	chr6	65301271	65301500	+	0	NA	promoter-TSS (NM_001271675)	promoter-TSS (NM_001271675)	-33	NM_001271675	441155		NM_001271675	ENSG00000214558	ZC3H11C	-	zinc finger CCCH-type containing 11C	protein-coding
160558	chr3	30685251	30685900	+	0	NA	intron (NM_001024847, intron 6 of 7)	LTR16A1|LTR|ERVL	78974	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
232122	chr9	133869621	133869880	+	0	NA	intron (NM_001134398, intron 2 of 29)	intron (NM_001134398, intron 2 of 29)	122574	NM_001134398	7410		NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
186742	chr5	139303221	139303780	+	0	NA	intron (NM_001194956, intron 1 of 13)	AluJb|SINE|Alu	9750	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
194727	chr6	33824851	33825000	+	0	NA	Intergenic	L2c|LINE|L2	-20922	NM_001040109	4295		NM_002418	ENSG00000096395	MLN	-	motilin	protein-coding
25767	chr10	11124051	11124150	+	0	NA	intron (NM_001326345, intron 1 of 13)	THE1B|LTR|ERVL-MaLR	-18612	NR_046108	439950		NR_046108	ENSG00000237986	CELF2-AS2	-	CELF2 antisense RNA 2	ncRNA
60154	chr13	39959451	39959750	+	0	NA	Intergenic	L1PA3|LINE|L1	-222209	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
136863	chr2	186592051	186592150	+	0	NA	intron (NM_001145000, intron 1 of 27)	intron (NM_001145000, intron 1 of 27)	2044	NM_002210	3685		NM_002210	ENSG00000138448	ITGAV	CD51|MSK8|VNRA|VTNR	integrin subunit alpha V	protein-coding
187152	chr5	140553671	140554200	+	0	NA	intron (NM_001035235, intron 2 of 4)	L2b|LINE|L2	3521	NR_045587	10011		NM_001035235	ENSG00000213523	SRA1	SRA|SRAP|STRAA1|pp7684	steroid receptor RNA activator 1	protein-coding
215837	chr8	6811921	6812380	+	0	NA	exon (NM_001289973, exon 8 of 8)	exon (NM_001289973, exon 8 of 8)	23374	NM_207411	389610		NM_207411	ENSG00000275591	XKR5	HARL2754|UNQ2754|XRG5A|XRG5BM	XK related 5	protein-coding
103482	chr17	78356001	78357000	+	0	NA	TTS (NM_003955)	TTS (NM_003955)	3167	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
207929	chr7	50753801	50754000	+	0	NA	intron (NM_001371008, intron 1 of 15)	intron (NM_001371008, intron 1 of 15)	-21547	NM_001001549	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
137927	chr2	201068321	201068580	+	0	NA	intron (NM_001321622, intron 1 of 12)	intron (NM_001321622, intron 1 of 12)	3221	NM_001321619	285172		NM_173822	ENSG00000155744	HYCC2	FAM126B	hyccin PI4KA lipid kinase complex subunit 2	protein-coding
100295	chr17	59754451	59754930	+	0	NA	intron (NM_001329397, intron 5 of 10)	intron (NM_001329397, intron 5 of 10)	47036	NM_001329401	81671		NM_030938	ENSG00000062716	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding
44782	chr11	112540301	112540500	+	0	NA	intron (NR_104155, intron 3 of 3)	intron (NR_104155, intron 3 of 3)	15402	NR_104155	387810		NR_104155	ENSG00000255484	LINC02764	-	long intergenic non-protein coding RNA 2764	ncRNA
92014	chr17	7463571	7465680	+	0	NA	intron (NM_020899, intron 3 of 3)	AluSx|SINE|Alu	15006	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
113746	chr19	10493721	10493980	+	0	NA	intron (NM_012289, intron 2 of 5)	AluYk4|SINE|Alu	8921	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
62748	chr13	106567101	106568750	+	0	NA	5' UTR (NM_018011, exon 1 of 4)	5' UTR (NM_018011, exon 1 of 4)	212	NM_018011	55082		NM_018011	ENSG00000134884	ARGLU1	-	arginine and glutamate rich 1	protein-coding
42659	chr11	72519171	72520450	+	0	NA	Intergenic	Intergenic	-50846	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
40091	chr11	62793551	62793650	+	0	NA	promoter-TSS (NR_106769)	promoter-TSS (NR_106769)	-829	NR_106769	102465257		NR_106769	ENSG00000274066	MIR6514	hsa-mir-6514|mir-6514	microRNA 6514	ncRNA
150803	chr21	43930571	43930930	+	0	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	5352	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
46393	chr11	126306751	126307080	+	0	NA	intron (NM_014026, intron 2 of 5)	MER20|DNA|hAT-Charlie	2855	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
48257	chr12	8541521	8541850	+	0	NA	promoter-TSS (NM_014358)	promoter-TSS (NM_014358)	-780	NM_014358	26253		NM_014358	ENSG00000166523	CLEC4E	CLECSF9|MINCLE	C-type lectin domain family 4 member E	protein-coding
197841	chr6	88725251	88725550	+	0	NA	intron (NM_001286428, intron 11 of 13)	HERVIP10FH-int|LTR|ERV1	-186031	NR_110867	101928936		NR_110867		LOC101928936	-	uncharacterized LOC101928936	ncRNA
2626	chr1	10194451	10194550	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-16070	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
212439	chr7	128393421	128393680	+	0	NA	intron (NM_183243, intron 14 of 14)	intron (NM_183243, intron 14 of 14)	6868	NR_148339	107986845		NR_148338		LOC107986845	-	uncharacterized LOC107986845	ncRNA
171125	chr3	195535971	195536280	+	0	NA	intron (NM_006241, intron 1 of 5)	Tigger2|DNA|TcMar-Tigger	7200	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
63787	chr14	21275751	21276450	+	0	NA	Intergenic	AluSz|SINE|Alu	-3983	NM_020366	57096		NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	RPGR interacting protein 1	protein-coding
180101	chr5	1172001	1172200	+	0	NA	TTS (NR_109911)	TTS (NR_109911)	6505	NR_109911	101928857		NR_109911	ENSG00000249201	TERLR1	CTD-3080P12.3	TERT regulating lncRNA 1	ncRNA
188660	chr5	157247971	157248280	+	0	NA	intron (NM_005546, intron 15 of 16)	MER5A1|DNA|hAT-Charlie	-17998	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
123464	chr19	54156651	54156750	+	0	NA	intron (NM_024316, intron 3 of 3).2	intron (NM_024316, intron 3 of 3).2	3021	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
89902	chr16	89695071	89695450	+	0	NA	intron (NM_052987, intron 11 of 12)	intron (NM_052987, intron 11 of 12)	6445	NM_152339	124044		NM_152339	ENSG00000158792	SPATA2L	C16orf76|tamo	spermatogenesis associated 2 like	protein-coding
107022	chr18	32095271	32095780	+	0	NA	intron (NM_198128, intron 1 of 4)	intron (NM_198128, intron 1 of 4)	2919	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
181519	chr5	43037851	43038720	+	0	NA	intron (NR_104651, intron 2 of 2)	intron (NR_104651, intron 2 of 2)	2034	NM_001014279	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
209819	chr7	88111321	88111680	+	0	NA	intron (NM_021721, intron 5 of 27)	intron (NM_021721, intron 5 of 27)	-105160	NR_120517	102723885		NR_120517		SRI-AS1	-	SRI antisense RNA 1	ncRNA
139817	chr2	230362071	230362530	+	0	NA	intron (NM_138402, intron 5 of 18)	MER21C|LTR|ERVL	35107	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
93357	chr17	18232771	18232930	+	0	NA	intron (NM_004140, intron 4 of 22)	intron (NM_004140, intron 4 of 22)	7215	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
92837	chr17	16210821	16211480	+	0	NA	intron (NM_006311, intron 1 of 45)	MIR3|SINE|MIR	4384	NM_006311	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
89371	chr16	88786951	88787730	+	0	NA	Intergenic	Intergenic	-2120	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
153332	chr22	24305251	24305750	+	0	NA	intron (NM_001254732, intron 2 of 14)	L1ME3A|LINE|L1	34669	NM_001254732	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
81753	chr16	11405371	11405850	+	0	NA	intron (NM_001370704, intron 47 of 66)	intron (NM_001370704, intron 47 of 66)	-59650	NR_110907	101927131		NR_110907	ENSG00000262999	LOC101927131	-	uncharacterized LOC101927131	ncRNA
112108	chr19	5583051	5583480	+	0	NA	Intergenic	ORSL-2b|DNA|hAT-Tip100	-15231	NR_027064								
149295	chr21	28830471	28830830	+	0	NA	Intergenic	AluSc8|SINE|Alu	54717	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
5633	chr1	26190001	26190930	+	0	NA	promoter-TSS (NM_198137)	promoter-TSS (NM_198137)	-137	NM_198137	378807		NM_198137	ENSG00000188782	CATSPER4	-	cation channel sperm associated 4	protein-coding
188589	chr5	157166451	157167480	+	0	NA	promoter-TSS (NM_130899)	promoter-TSS (NM_130899)	-701	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
73776	chr15	45618901	45619580	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-11908	NM_001271213	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
215496	chr7	158589651	158590030	+	0	NA	promoter-TSS (NR_132379)	promoter-TSS (NR_132379)	-789	NR_132379	105375616		NR_132379		LINC01022	-	long intergenic non-protein coding RNA 1022	ncRNA
62971	chr13	112292151	112292750	+	0	NA	Intergenic	Intergenic	-19450	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
77574	chr15	84989201	84989500	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	7376	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
44991	chr11	116952471	116952630	+	0	NA	intron (NM_001281748, intron 3 of 24)	L3|LINE|CR1	-114600	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
94609	chr17	29756571	29757180	+	0	NA	intron (NM_033389, intron 2 of 14)	AluSx3|SINE|Alu	4557	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
88950	chr16	87844371	87844530	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-9446	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
165662	chr3	101854751	101854850	+	0	NA	intron (NM_031419, intron 6 of 11)	intron (NM_031419, intron 6 of 11)	5286	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
79496	chr16	781601	782150	+	0	NA	Intergenic	Intergenic	6506	NM_001369658	113000		NM_058192	ENSG00000007376	RPUSD1	C16orf40|RLUCL	RNA pseudouridine synthase domain containing 1	protein-coding
8484	chr1	40815801	40816400	+	0	NA	intron (NM_172163, intron 1 of 12)	intron (NM_172163, intron 1 of 12)	32313	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
127777	chr2	44176401	44176850	+	0	NA	intron (NM_177969, intron 1 of 4)	intron (NM_177969, intron 1 of 4)	7750	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
62302	chr13	99000151	99000830	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	15295	NM_001366677	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
226812	chr9	77176771	77178780	+	0	NA	exon (NM_015186, exon 1 of 69)	exon (NM_015186, exon 1 of 69)	142	NR_026668	100286938		NR_026668		VPS13A-AS1	-	VPS13A antisense RNA 1	ncRNA
175551	chr4	75510271	75510430	+	0	NA	intron (NM_001278538, intron 1 of 8)	MLT1J2|LTR|ERVL-MaLR	-1054	NR_103725	25898		NM_015436	ENSG00000163743	RCHY1	ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363	ring finger and CHY zinc finger domain containing 1	protein-coding
132094	chr2	101321621	101321880	+	0	NA	Intergenic	AluSz6|SINE|Alu	12300	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
22871	chr1	225775721	225776050	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-1928	NM_001130440	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
158789	chr3	9642471	9643030	+	0	NA	Intergenic	LTR8|LTR|ERV1	-6755	NM_001077526	64419		NM_022485	ENSG00000163719	MTMR14	C3orf29	myotubularin related protein 14	protein-coding
17053	chr1	156094121	156094580	+	0	NA	intron (NM_001282625, intron 3 of 12)	AluSx4|SINE|Alu	11777	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
195328	chr6	36613801	36614200	+	0	NA	Intergenic	AluSx1|SINE|Alu	8512	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
169659	chr3	171493471	171493630	+	0	NA	Intergenic	AluSp|SINE|Alu	-33142	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
237242	chrX	110003651	110003900	+	0	NA	exon (NM_032227, exon 2 of 7)	exon (NM_032227, exon 2 of 7)	661	NM_032227	84187		NM_017698	ENSG00000157600	TMEM164	bB360B22.3	transmembrane protein 164	protein-coding
172274	chr4	1511551	1512300	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-105483	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
94063	chr17	27453851	27454550	+	0	NA	Intergenic	AluJo|SINE|Alu	-2248	NM_001367810	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
78362	chr15	91349021	91349480	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-114089	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
86191	chr16	57984471	57986180	+	0	NA	intron (NM_199456, intron 5 of 7)	CpG-9766	8781	NM_199046	374739		NM_199046	ENSG00000159648	SPMIP8	TEPP	sperm microtubule inner protein 8	protein-coding
58139	chr12	124905351	124905980	+	0	NA	Intergenic	AluY|SINE|Alu	8985	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
85970	chr16	57302351	57302850	+	0	NA	Intergenic	AluSg|SINE|Alu	-17928	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
142583	chr20	5541701	5541900	+	0	NA	Intergenic	AluJo|SINE|Alu	-31798	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
101975	chr17	74744371	74745650	+	0	NA	exon (NM_001006638, exon 8 of 9)	exon (NM_001006638, exon 8 of 9)	-3603	NR_037409	100500847		NR_037409	ENSG00000284186	MIR3615	mir-3615	microRNA 3615	ncRNA
215468	chr7	158270271	158270430	+	0	NA	intron (NM_001308267, intron 2 of 21)	intron (NM_001308267, intron 2 of 21)	262463	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
111799	chr19	4454121	4454380	+	0	NA	intron (NM_025241, intron 1 of 10)	intron (NM_025241, intron 1 of 10)	1051	NM_001171091	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
151719	chr22	17726751	17727200	+	0	NA	exon (NM_001270733, exon 2 of 2)	exon (NM_001270733, exon 2 of 2)	20317	NM_001270733	23786		NM_015367	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2 like 13	protein-coding
22178	chr1	212289451	212289750	+	0	NA	intron (NM_006243, intron 1 of 12)	MIRb|SINE|MIR	4190	NM_006243	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
228625	chr9	105693301	105693580	+	0	NA	Intergenic	Intergenic	-1101	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
221428	chr8	123773501	123773700	+	0	NA	intron (NM_001317918, intron 1 of 22)	intron (NM_001317918, intron 1 of 22)	5161	NM_001317918	157769		NM_144963	ENSG00000176853	FAM91A1	-	family with sequence similarity 91 member A1	protein-coding
11527	chr1	90989951	90990250	+	0	NA	intron (NM_032186, intron 1 of 3)	L1MB2|LINE|L1	31408	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
169909	chr3	177679501	177680500	+	0	NA	intron (NR_047568, intron 3 of 3)	MamTip2|DNA|hAT-Tip100	-136865	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
161041	chr3	38005621	38006330	+	0	NA	intron (NM_015873, intron 17 of 19)	intron (NM_015873, intron 17 of 19)	11837	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
144287	chr20	34698751	34699250	+	0	NA	Intergenic	Intergenic	-5344	NM_021202	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
50170	chr12	45983351	45983800	+	0	NA	intron (NM_004719, intron 1 of 14)	intron (NM_004719, intron 1 of 14)	6999	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
37115	chr11	13302171	13302530	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	24560	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
199750	chr6	125805671	125806080	+	0	NA	intron (NR_126386, intron 1 of 2)	intron (NR_126386, intron 1 of 2)	12983	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
105236	chr17	82383771	82383930	+	0	NA	Intergenic	Intergenic	12085	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
204400	chr7	3042421	3044900	+	0	NA	intron (NM_001324281, intron 1 of 25)	CpG	207	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
196553	chr6	44072601	44073600	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	1552	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
167457	chr3	129100501	129100900	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	21104	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
12250	chr1	100439821	100440600	+	0	NA	intron (NM_001319210, intron 6 of 16)	intron (NM_001319210, intron 6 of 16)	87704	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
107944	chr18	58121851	58122260	+	0	NA	intron (NM_001144964, intron 1 of 30)	intron (NM_001144964, intron 1 of 30)	-27265	NM_001144968	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
86898	chr16	68040421	68041230	+	0	NA	intron (NM_001271763, intron 3 of 14)	intron (NM_001271763, intron 3 of 14)	17541	NM_017803	54920		NM_017803	ENSG00000167264	DUS2	DUS2L|SMM1|URLC8	dihydrouridine synthase 2	protein-coding
1722	chr1	5712671	5712830	+	0	NA	Intergenic	Intergenic	149991	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
207194	chr7	43629701	43630650	+	0	NA	TTS (NR_047701)	TTS (NR_047701)	47067	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
31697	chr10	97637501	97637950	+	0	NA	Intergenic	Intergenic	-2961	NM_018425	55361		NM_018425	ENSG00000155252	PI4K2A	NEDMSB|PI4KII|PIK42A	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
234593	chrX	19790151	19790450	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	9473	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
106103	chr18	9158321	9158980	+	0	NA	intron (NM_001204056, intron 1 of 11)	L1MC3|LINE|L1	21087	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
154007	chr22	30422871	30424830	+	0	NA	3' UTR (NM_001204204, exon 10 of 10)	3' UTR (NM_001204204, exon 10 of 10)	-1918	NM_001003704	51537		NM_016498	ENSG00000242114	MTFP1	HSPC242|MTP18	mitochondrial fission process 1	protein-coding
120826	chr19	45494501	45495250	+	0	NA	exon (NM_206900, exon 3 of 10)	exon (NM_206900, exon 3 of 10)	-1622	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
45277	chr11	118015301	118016650	+	0	NA	intron (NM_001354434, intron 3 of 5)	intron (NM_001354434, intron 3 of 5)	29581	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
90963	chr17	2689101	2689300	+	0	NA	TTS (NM_001366662)	TTS (NM_001366662)	3719	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
151687	chr22	17158351	17159800	+	0	NA	promoter-TSS (NR_024482)	promoter-TSS (NR_024482)	202	NM_033070	27440		NM_017829	ENSG00000069998	HDHD5	CECR5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding
189272	chr5	172072271	172072430	+	0	NA	intron (NM_005990, intron 12 of 18)	AluY|SINE|Alu	-65712	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
232297	chr9	134457971	134458830	+	0	NA	Intergenic	Intergenic	51840	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
52557	chr12	56149701	56149900	+	0	NA	Intergenic	LTR47A|LTR|ERVL	-2787	NM_001199629	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
102299	chr17	75343771	75344330	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	-54601	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
91578	chr17	5198221	5199000	+	0	NA	intron (NR_152840, intron 1 of 5)	MER1B|DNA|hAT-Charlie	6603	NR_152840	100130950		NR_034082	ENSG00000261879	ZNF594-DT	-	ZNF594 divergent transcript	ncRNA
4677	chr1	22635271	22635430	+	0	NA	Intergenic	MER52A|LTR|ERV1	-1278	NM_001347465	712		NM_015991	ENSG00000173372	C1QA	C1QD1	complement C1q A chain	protein-coding
156542	chr22	41431121	41431380	+	0	NA	Intergenic	Intergenic	15551	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
51220	chr12	50624871	50625450	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	120175	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
118697	chr19	38208801	38209200	+	0	NA	TTS (NM_015073)	TTS (NM_015073)	15222	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
18884	chr1	168178571	168180350	+	0	NA	intron (NM_001031800, intron 1 of 4)	intron (NM_001031800, intron 1 of 4)	498	NM_001031800	261726		NM_152902	ENSG00000143155	TIPRL	TIP|TIP41|TIPRL1	TOR signaling pathway regulator	protein-coding
158617	chr3	4870751	4871200	+	0	NA	Intergenic	AluSz|SINE|Alu	35526	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
29640	chr10	71845271	71845630	+	0	NA	intron (NM_002778, intron 1 of 13)	intron (NM_002778, intron 1 of 13)	5801	NM_002778	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
188948	chr5	160480751	160481100	+	0	NA	intron (NR_132748, intron 1 of 1)	MIRc|SINE|MIR	-4427	NR_029701	406938		NR_029701	ENSG00000283733	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
222453	chr8	139340771	139341100	+	0	NA	Intergenic	Intergenic	362188	NR_104210	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
49173	chr12	15088171	15088400	+	0	NA	Intergenic	Intergenic	-63638	NR_046559	100873980		NR_046559	ENSG00000255660	RERG-AS1	-	RERG antisense RNA 1	ncRNA
210435	chr7	100094951	100096630	+	0	NA	exon (NM_005916, exon 11 of 15)	exon (NM_005916, exon 11 of 15)	-1716	NR_029831	406900		NR_029831	ENSG00000208036	MIR106B	MIRN106B|mir-106b	microRNA 106b	ncRNA
38832	chr11	47315121	47315530	+	0	NA	exon (NM_001376597, exon 29 of 36)	exon (NM_001376597, exon 29 of 36)	37377	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
59456	chr13	25974851	25974950	+	0	NA	intron (NM_016529, intron 35 of 36)	intron (NM_016529, intron 35 of 36)	77116	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
179515	chr4	184782771	184783130	+	0	NA	intron (NR_167706, intron 4 of 21)	intron (NR_167706, intron 4 of 21)	16096	NR_003542	643036		NR_003542	ENSG00000293200	SLED1	-	proteoglycan 3, pro eosinophil major basic protein 2 pseudogene	pseudo
212876	chr7	130871221	130871550	+	0	NA	Intergenic	AluSc|SINE|Alu	5425	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
126052	chr2	25566801	25567000	+	0	NA	intron (NM_001320937, intron 8 of 8)	L2|LINE|L2	83322	NM_001256308	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
101641	chr17	68245771	68246150	+	0	NA	intron (NM_001346472, intron 2 of 7)	intron (NM_001346472, intron 2 of 7)	-1614	NM_001346474	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
197368	chr6	73471551	73472000	+	0	NA	intron (NM_133645, intron 3 of 12)	intron (NM_133645, intron 3 of 12)	10038	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
202938	chr6	160535271	160535590	+	0	NA	intron (NM_005577, intron 37 of 38)	(TGGTGA)n|Simple_repeat|Simple_repeat	-24306	NR_028093	80350		NM_024492	ENSG00000290613	LPAL2	APOA2|APOAL|APOARGC|apo(a)rg-C	lipoprotein(a) like 2 (pseudogene)	pseudo
89679	chr16	89380271	89380830	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-50368	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
116332	chr19	17841721	17842830	+	0	NA	intron (NM_000215, intron 6 of 23)	CpG-14019	5707	NM_000215	3718		NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
163843	chr3	52479551	52479850	+	0	NA	intron (NM_001276294, intron 11 of 13)	intron (NM_001276294, intron 11 of 13)	-15638	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
6803	chr1	30904721	30905330	+	0	NA	intron (NM_014654, intron 1 of 4)	intron (NM_014654, intron 1 of 4)	3733	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
19624	chr1	180055471	180055630	+	0	NA	intron (NM_014810, intron 25 of 37)	AluYk4|SINE|Alu	-99283	NM_001004128	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
20283	chr1	196660921	196661280	+	0	NA	intron (NM_001014975, intron 1 of 9)	intron (NM_001014975, intron 1 of 9)	9057	NM_000186	3075		NM_000186	ENSG00000000971	CFH	AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS	complement factor H	protein-coding
56478	chr12	116172101	116173250	+	0	NA	intron (NM_015335, intron 2 of 30)	MIRc|SINE|MIR	-24021	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
34202	chr10	129070771	129071180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	158142	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
99364	chr17	49908151	49908600	+	0	NA	Intergenic	Intergenic	-60358	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
94301	chr17	28737521	28737780	+	0	NA	intron (NM_178170, intron 5 of 14)	intron (NM_178170, intron 5 of 14)	-6361	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
8869	chr1	43454481	43455250	+	0	NA	promoter-TSS (NM_031207)	promoter-TSS (NM_031207)	-876	NM_001243526	81888		NM_031207	ENSG00000178922	HYI	HT036	hydroxypyruvate isomerase (putative)	protein-coding
109059	chr18	79884901	79885100	+	0	NA	intron (NM_012283, intron 1 of 1)	intron (NM_012283, intron 1 of 1)	21332	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
239057	chrY	7284171	7284530	+	0	NA	intron (NR_028062, intron 1 of 7)	AluSx1|SINE|Alu	10378	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
127799	chr2	44295751	44296230	+	0	NA	intron (NM_000341, intron 4 of 9)	Arthur1A|DNA|hAT-Tip100	20510	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
183336	chr5	76735901	76736430	+	0	NA	TTS (NM_001992)	TTS (NM_001992)	20039	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
130451	chr2	85434451	85435150	+	0	NA	intron (NM_201594, intron 17 of 20)	intron (NM_201594, intron 17 of 20)	15869	NM_201594								
20076	chr1	186303671	186304380	+	0	NA	intron (NM_001127710, intron 3 of 9)	intron (NM_001127710, intron 3 of 9)	7746	NM_005807	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
21778	chr1	206927371	206928150	+	0	NA	TTS (NM_002644)	TTS (NM_002644)	-5819	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
217428	chr8	28410651	28410980	+	0	NA	Intergenic	Intergenic	-24355	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
223892	chr9	292001	292430	+	0	NA	intron (NM_203447, intron 4 of 47)	AluSp|SINE|Alu	19167	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
94972	chr17	32262521	32262980	+	0	NA	Intergenic	Intergenic	-3082	NM_001330181	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
13543	chr1	115088151	115088330	+	0	NA	intron (NM_001308315, intron 1 of 6)	intron (NM_001308315, intron 1 of 6)	1260	NM_001308315	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
57088	chr12	121029851	121030380	+	0	NA	intron (NM_003733, intron 3 of 5)	AluJb|SINE|Alu	9127	NM_003733	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
36086	chr11	3009671	3010200	+	0	NA	intron (NR_165428, intron 18 of 22)	intron (NR_165428, intron 18 of 22)	-17606	NM_001369375	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
43138	chr11	75280021	75281000	+	0	NA	intron (NM_020251, intron 7 of 14)	intron (NM_020251, intron 7 of 14)	39736	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
139254	chr2	219418451	219418750	+	0	NA	exon (NM_001382709, exon 1 of 7)	exon (NM_001382709, exon 1 of 7)	223	NM_001382713	1674		NM_001927	ENSG00000175084	DES	CDCD3|CSM1|CSM2|LGMD1D|LGMD1E|LGMD2R	desmin	protein-coding
226959	chr9	79867221	79867480	+	0	NA	intron (NR_121213, intron 1 of 2)	intron (NR_121213, intron 1 of 2)	42820	NR_121213	101927477		NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
154444	chr22	35376871	35377430	+	0	NA	Intergenic	Intergenic	-3946	NM_002133	3162		NM_002133	ENSG00000100292	HMOX1	HMOX1D|HO-1|HSP32|bK286B10	heme oxygenase 1	protein-coding
238741	chrX	154316701	154316900	+	0	NA	intron (NM_001145933, intron 7 of 12)	AluSx|SINE|Alu	11630	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
209602	chr7	77565871	77566430	+	0	NA	intron (NM_001131008, intron 1 of 17)	intron (NM_001131008, intron 1 of 17)	28107	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
104240	chr17	80711201	80711400	+	0	NA	intron (NM_020761, intron 4 of 33)	intron (NM_020761, intron 4 of 33)	94332	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
37476	chr11	18368371	18368930	+	0	NA	Intergenic	MIRb|SINE|MIR	-19137	NR_036116	100423016		NR_036116	ENSG00000264603	MIR3159	-	microRNA 3159	ncRNA
137402	chr2	196248301	196248950	+	0	NA	intron (NM_001348768, intron 19 of 28)	(AC)n|Simple_repeat|Simple_repeat	-11399	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
181471	chr5	42718701	42719130	+	0	NA	exon (NM_001242399, exon 10 of 10)	exon (NM_001242399, exon 10 of 10)	-37903	NM_001134848	100129792		NM_001134848	ENSG00000198865	CCDC152	CH5400	coiled-coil domain containing 152	protein-coding
156746	chr22	41827721	41827980	+	0	NA	non-coding (NR_157279, exon 2 of 2)	non-coding (NR_157279, exon 2 of 2)	-5255	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
213088	chr7	131103551	131105100	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	2705	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
36273	chr11	3795101	3795450	+	0	NA	intron (NR_157590, intron 1 of 31)	AluJb|SINE|Alu	2271	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
140059	chr2	231399571	231400130	+	0	NA	3' UTR (NM_145236, exon 2 of 2)	3' UTR (NM_145236, exon 2 of 2)	4140	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
230275	chr9	127922971	127923130	+	0	NA	intron (NM_173492, intron 4 of 4)	intron (NM_173492, intron 4 of 4)	4441	NM_173492	138429		NM_173492	ENSG00000167103	PIP5KL1	PIPKH	phosphatidylinositol-4-phosphate 5-kinase like 1	protein-coding
43831	chr11	86869971	86870230	+	0	NA	intron (NR_120592, intron 2 of 2)	intron (NR_120592, intron 2 of 2)	-12146	NR_045004	8587		NR_045004	ENSG00000255203	OR7E2P	OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94	olfactory receptor family 7 subfamily E member 2 pseudogene	pseudo
42351	chr11	68535671	68535830	+	0	NA	intron (NM_001352348, intron 3 of 24)	AluSz|SINE|Alu	74998	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
76315	chr15	74383601	74384230	+	0	NA	intron (NR_146881, intron 2 of 3)	intron (NR_146881, intron 2 of 3)	4833	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
189129	chr5	170834051	170834150	+	0	NA	Intergenic	(ACC)n|Simple_repeat|Simple_repeat	-27918	NM_022897	64901		NM_022897	ENSG00000204764	RANBP17	-	RAN binding protein 17	protein-coding
21941	chr1	207870951	207871930	+	0	NA	Intergenic	AluJb|SINE|Alu	39685	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
25949	chr10	11479371	11479530	+	0	NA	intron (NM_014688, intron 14 of 14)	L1ME3G|LINE|L1	52830	NM_001080491	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
96903	chr17	42127071	42127230	+	0	NA	intron (NM_004583, intron 4 of 5)	L1MC|LINE|L1	4346	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
226609	chr9	73166401	73167000	+	0	NA	intron (NM_000700, intron 10 of 12)	MER5A1|DNA|hAT-Charlie	14835	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
24976	chr10	3064521	3065250	+	0	NA	TTS (NR_160682)	TTS (NR_160682)	2048	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
166235	chr3	112131321	112131750	+	0	NA	intron (NM_001190259, intron 1 of 5)	FLAM_A|SINE|Alu	1713	NM_152785	257144		NM_152785	ENSG00000174500	GCSAM	GCAT2|GCET2|HGAL	germinal center associated signaling and motility	protein-coding
90072	chr16	90007821	90008130	+	0	NA	intron (NM_001371581, intron 1 of 1)	intron (NM_001371581, intron 1 of 1)	1029	NM_001371581	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
39594	chr11	61297951	61298280	+	0	NA	Intergenic	Intergenic	-2799	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
157156	chr22	42867401	42868750	+	0	NA	Intergenic	AluY|SINE|Alu	-10802	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
125317	chr2	10691421	10691750	+	0	NA	non-coding (NR_144555, exon 1 of 1)	non-coding (NR_144555, exon 1 of 1)	1575	NR_144555	106479524		NR_144555	ENSG00000243819	RN7SL832P	-	RNA, 7SL, cytoplasmic 832, pseudogene	pseudo
209952	chr7	92641901	92642780	+	0	NA	intron (NM_001145306, intron 5 of 7)	intron (NM_001145306, intron 5 of 7)	-51950	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
32480	chr10	102664201	102664600	+	0	NA	Intergenic	Intergenic	19905	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
135967	chr2	172093051	172093430	+	0	NA	Intergenic	Intergenic	7733	NM_178120	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
125084	chr2	9697901	9698530	+	0	NA	Intergenic	Intergenic	-67218	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
177947	chr4	138886771	138886950	+	0	NA	intron (NR_133945, intron 2 of 2)	L1PA3|LINE|L1	125786	NR_133945	105377448		NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
104573	chr17	81368171	81368530	+	0	NA	Intergenic	Intergenic	16775	NR_164138	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
205969	chr7	26166771	26166930	+	0	NA	intron (NM_004289, intron 1 of 3)	intron (NM_004289, intron 1 of 3)	14652	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
196085	chr6	42297171	42297330	+	0	NA	intron (NM_033502, intron 4 of 17)	L1MEd|LINE|L1	-79389	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
67565	chr14	71372051	71372150	+	0	NA	intron (NM_001354287, intron 2 of 23)	intron (NM_001354287, intron 2 of 23)	-26237	NR_001276	319139		NR_001276	ENSG00000207444	SNORD56B	RNU56B	small nucleolar RNA, C/D box 56B	snoRNA
137174	chr2	191124401	191124600	+	0	NA	intron (NM_003151, intron 3 of 23)	L2b|LINE|L2	26494	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
186546	chr5	138454121	138454450	+	0	NA	Intergenic	Intergenic	-11194	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
28494	chr10	50047601	50048200	+	0	NA	intron (NR_038275, intron 6 of 6)	MER39|LTR|ERV1	19903	NR_038275	100421577		NR_038275	ENSG00000290956	FAM21EP	-	family with sequence similarity 21, member A pseudogene	pseudo
99928	chr17	57083851	57083950	+	0	NA	Intergenic	L2a|LINE|L2	-1346	NM_003488	8165		NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding
35397	chr11	1382721	1384350	+	0	NA	Intergenic	Intergenic	-6399	NR_046331	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
188355	chr5	151746251	151746750	+	0	NA	intron (NM_004045, intron 2 of 3)	intron (NM_004045, intron 2 of 3)	12131	NM_004045	475		NM_004045	ENSG00000177556	ATOX1	ATX1|HAH1	antioxidant 1 copper chaperone	protein-coding
65849	chr14	55026721	55027780	+	0	NA	promoter-TSS (NM_001008396)	promoter-TSS (NM_001008396)	14	NM_080867	122809		NM_080867	ENSG00000180008	SOCS4	SOCS7	suppressor of cytokine signaling 4	protein-coding
61841	chr13	76799671	76799830	+	0	NA	Intergenic	AluSq|SINE|Alu	86655	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
64876	chr14	35335821	35336080	+	0	NA	Intergenic	Intergenic	43568	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
42896	chr11	73372201	73372980	+	0	NA	Intergenic	Intergenic	-3809	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
72597	chr15	35545371	35546730	+	0	NA	promoter-TSS (NR_038251)	promoter-TSS (NR_038251)	115	NM_080650	89978		NM_080650	ENSG00000134146	DPH6	ATPBD4	diphthamine biosynthesis 6	protein-coding
216933	chr8	22755921	22756490	+	0	NA	intron (NM_001363233, intron 4 of 6)	intron (NM_001363233, intron 4 of 6)	-62725	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
234020	chrX	3710271	3710430	+	0	NA	intron (NM_005044, intron 1 of 8)	intron (NM_005044, intron 1 of 8)	3299	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
2020	chr1	7075451	7075550	+	0	NA	intron (NM_001349608, intron 2 of 21)	intron (NM_001349608, intron 2 of 21)	290046	NM_001349609	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
160921	chr3	36824961	36825130	+	0	NA	Intergenic	Intergenic	-2545	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
189994	chr5	177464371	177464530	+	0	NA	intron (NM_004395, intron 8 of 13)	AluSg|SINE|Alu	-2024	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
67590	chr14	72024071	72024230	+	0	NA	intron (NM_001370288, intron 2 of 16)	intron (NM_001370288, intron 2 of 16)	90623	NM_001370277	9628		NM_004296	ENSG00000182732	RGS6	GAP|HA117|S914	regulator of G protein signaling 6	protein-coding
146448	chr20	49678651	49679900	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	34603	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
131145	chr2	91510551	91511050	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	149149	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
85734	chr16	56667901	56668530	+	0	NA	promoter-TSS (NM_005950)	promoter-TSS (NM_005950)	-150	NM_005950	4495		NM_005950	ENSG00000125144	MT1G	MT1|MT1K	metallothionein 1G	protein-coding
232279	chr9	134436401	134436800	+	0	NA	exon (NM_002957, exon 10 of 10)	exon (NM_002957, exon 10 of 10)	30040	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
102277	chr17	75309271	75309430	+	0	NA	Intergenic	Intergenic	-19901	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
142055	chr20	1876821	1877350	+	0	NA	Intergenic	Intergenic	-17082	NM_001040022	140885		NM_080792	ENSG00000198053	SIRPA	BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP	signal regulatory protein alpha	protein-coding
113542	chr19	10189501	10190050	+	0	NA	intron (NM_001318730, intron 1 of 39)	Tigger1|DNA|TcMar-Tigger	5178	NM_001318731	1786		NM_001379	ENSG00000130816	DNMT1	ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI	DNA methyltransferase 1	protein-coding
159276	chr3	12963071	12964680	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	3855	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
140353	chr2	232692571	232692730	+	0	NA	Intergenic	AluSg|SINE|Alu	-4681	NM_001103148	26058		NM_015575	ENSG00000204120	GIGYF2	GYF2|PARK11|PERQ2|PERQ3|TNRC15	GRB10 interacting GYF protein 2	protein-coding
174481	chr4	39929871	39930380	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluSc8|SINE|Alu	47786	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
53485	chr12	66203601	66204000	+	0	NA	exon (NM_007199, exon 2 of 12)	exon (NM_007199, exon 2 of 12)	14586	NM_001142523	11213		NM_007199	ENSG00000090376	IRAK3	ASRT5|IRAKM	interleukin 1 receptor associated kinase 3	protein-coding
44586	chr11	108266521	108266980	+	0	NA	intron (NM_000051, intron 16 of 62)	intron (NM_000051, intron 16 of 62)	43221	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
61148	chr13	48731521	48732330	+	0	NA	Intergenic	Intergenic	77996	NM_001308476	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
74887	chr15	63592271	63593000	+	0	NA	non-coding (NR_046341, exon 16 of 16)	non-coding (NR_046341, exon 16 of 16)	-4752	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
118679	chr19	37898501	37898950	+	0	NA	intron (NM_031951, intron 1 of 5)	intron (NM_031951, intron 1 of 5)	7869	NM_001291088	83889		NM_031951	ENSG00000171804	WDR87	NYD-SP11	WD repeat domain 87	protein-coding
19977	chr1	184970671	184971230	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	3558	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
202074	chr6	154244021	154244750	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	85696	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
82153	chr16	14833351	14834580	+	0	NA	exon (NM_001004067, exon 1 of 31)	exon (NM_001004067, exon 1 of 31)	244	NM_014287	23420		NM_014287	ENSG00000103512	NOMO1	Nomo|PM5	NODAL modulator 1	protein-coding
105062	chr17	82085071	82086050	+	0	NA	exon (NM_004104, exon 23 of 43)	exon (NM_004104, exon 23 of 43)	4580	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
231995	chr9	133346451	133346550	+	0	NA	intron (NM_133640, intron 2 of 4).2	intron (NM_133640, intron 2 of 4).2	1631	NM_133640	6837		NM_006752	ENSG00000148297	MED22	MED24|SRB6|SURF5|surf-5	mediator complex subunit 22	protein-coding
1371	chr1	2516221	2516480	+	0	NA	intron (NM_018216, intron 9 of 18).2	intron (NM_018216, intron 9 of 18).2	10246	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
95567	chr17	36936421	36937150	+	0	NA	promoter-TSS (NR_135671)	promoter-TSS (NR_135671)	-124	NR_135671	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
197396	chr6	73505951	73506650	+	0	NA	3' UTR (NM_001123226, exon 13 of 13)	3' UTR (NM_001123226, exon 13 of 13)	12138	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
115250	chr19	14527671	14528000	+	0	NA	intron (NM_001313964, intron 1 of 3)	intron (NM_001313964, intron 1 of 3)	1487	NM_001313964	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
225287	chr9	34493921	34494280	+	0	NA	intron (NM_012144, intron 9 of 19)	intron (NM_012144, intron 9 of 19)	28890	NM_198573	375704		NM_198573	ENSG00000168913	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
41268	chr11	65842351	65842800	+	0	NA	intron (NM_152760, intron 1 of 12)	AluSx|SINE|Alu	8612	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
167622	chr3	129584471	129584830	+	0	NA	intron (NM_015103, intron 5 of 35)	intron (NM_015103, intron 5 of 35)	22026	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
168434	chr3	142576801	142577000	+	0	NA	intron (NM_001184, intron 1 of 46)	intron (NM_001184, intron 1 of 46)	1833	NM_001354579	545		NM_001184	ENSG00000175054	ATR	FCTCS|FRP1|MEC1|SCKL|SCKL1	ATR serine/threonine kinase	protein-coding
226731	chr9	75866321	75866580	+	0	NA	Intergenic	Intergenic	-24194	NM_001190482	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
195686	chr6	38571471	38572550	+	0	NA	intron (NM_001172418, intron 5 of 10)	intron (NM_001172418, intron 5 of 10)	24057	NM_001172418	114781		NM_052893	ENSG00000183826	BTBD9	dJ322I12.1	BTB domain containing 9	protein-coding
111777	chr19	4426951	4427450	+	0	NA	intron (NM_005483, intron 7 of 14)	AluSx1|SINE|Alu	-18778	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
172992	chr4	4251471	4251830	+	0	NA	Intergenic	Intergenic	-3408	NM_032927	85013		NM_032927	ENSG00000132406	TMEM128	-	transmembrane protein 128	protein-coding
73572	chr15	44433201	44433600	+	0	NA	intron (NM_016396, intron 1 of 12)	FLAM_C|SINE|Alu	5771	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
109353	chr19	619971	620350	+	0	NA	intron (NM_005035, intron 11 of 20)	CpG-12898	13377	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
9698	chr1	53086021	53086280	+	0	NA	TTS (NM_001199080)	TTS (NM_001199080)	23937	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
124718	chr2	3651801	3652880	+	0	NA	Intergenic	Intergenic	-5860	NM_018436	55821		NM_018436	ENSG00000151360	ALLC	ALC	allantoicase	protein-coding
59305	chr13	24276221	24277130	+	0	NA	intron (NM_001286795, intron 1 of 9)	intron (NM_001286795, intron 1 of 9)	5925	NM_001286793	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
18419	chr1	161450501	161451420	+	0	NA	Intergenic	CpG	-54497	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
62124	chr13	95644421	95644780	+	0	NA	5' UTR (NM_198968, exon 1 of 23)	5' UTR (NM_198968, exon 1 of 23)	106	NM_198968	22873		NM_014934	ENSG00000134874	DZIP1	DZIP|DZIPt1|MMVP3|MVP3|SPGF47	DAZ interacting zinc finger protein 1	protein-coding
558	chr1	1250251	1250430	+	0	NA	Intergenic	LTR13|LTR|ERVK	-3618	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
135355	chr2	160408801	160409000	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	-1018	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
188967	chr5	163457951	163458280	+	0	NA	intron (NM_145266, intron 1 of 3)	AluSx3|SINE|Alu	1987	NM_001329991	134492		NM_145266	ENSG00000170584	NUDCD2	NudCL2	NudC domain containing 2	protein-coding
222188	chr8	133034671	133034930	+	0	NA	intron (NM_003235, intron 41 of 47)	intron (NM_003235, intron 41 of 47)	11781	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
159027	chr3	10945751	10946000	+	0	NA	Intergenic	Intergenic	-46859	NM_001348251	6529		NM_003042	ENSG00000157103	SLC6A1	GABATHG|GABATR|GAT1|MAE|hGAT-1	solute carrier family 6 member 1	protein-coding
80316	chr16	2341821	2342480	+	0	NA	intron (NR_003574, intron 1 of 16)	CpG-9099	1228	NR_003574	650655		NR_003574	ENSG00000293423	ABCA17P	ABCA17	ATP binding cassette subfamily A member 17, pseudogene	pseudo
102026	chr17	74854021	74854280	+	0	NA	intron (NM_001278553, intron 2 of 11)	L2c|LINE|L2	5734	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
76233	chr15	73951071	73951830	+	0	NA	intron (NM_005576, intron 6 of 6)	intron (NM_005576, intron 6 of 6)	-23202	NR_040068	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
156779	chr22	41898221	41898630	+	0	NA	intron (NR_103834, intron 15 of 21)	L1ME4c|LINE|L1	-2519	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
66037	chr14	58293771	58294200	+	0	NA	intron (NR_029434, intron 1 of 4)	AluJb|SINE|Alu	4152	NR_029435	379025		NR_029434	ENSG00000257621	PSMA3-AS1	-	PSMA3 antisense RNA 1	ncRNA
113797	chr19	10565121	10567380	+	0	NA	promoter-TSS (NM_023008)	promoter-TSS (NM_023008)	-240	NM_023008	65095		NM_023008	ENSG00000129347	KRI1	-	KRI1 homolog	protein-coding
153717	chr22	29292621	29293280	+	0	NA	intron (NM_001163286, intron 10 of 15)	AluSq2|SINE|Alu	-14073	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
77436	chr15	84192901	84193250	+	0	NA	intron (NR_033738, intron 1 of 7)	intron (NR_033738, intron 1 of 7)	1227	NR_033738	440300		NR_033738		LOC440300	-	chondroitin sulfate proteoglycan 4 pseudogene	pseudo
32266	chr10	102058351	102058450	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2227	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
86697	chr16	67534071	67534730	+	0	NA	intron (NM_001193523, intron 1 of 21)	AluSz6|SINE|Alu	-3062	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
233975	chrX	2701401	2702000	+	0	NA	intron (NR_135623, intron 1 of 10)	intron (NR_135623, intron 1 of 10)	10405	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
40629	chr11	64714471	64714830	+	0	NA	intron (NM_015080, intron 1 of 22)	intron (NM_015080, intron 1 of 22)	8547	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
106915	chr18	26133451	26134200	+	0	NA	promoter-TSS (NM_001308188)	promoter-TSS (NM_001308188)	-44	NM_001025097	143471		NM_144662	ENSG00000154611	PSMA8	PSMA7L	proteasome 20S subunit alpha 8	protein-coding
120595	chr19	45014671	45014830	+	0	NA	intron (NM_006509, intron 3 of 10)	AluSz|SINE|Alu	13286	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
169866	chr3	177224301	177224700	+	0	NA	Intergenic	Intergenic	-27018	NM_001374330	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
52231	chr12	54395371	54395730	+	0	NA	3' UTR (NM_002205, exon 30 of 30)	3' UTR (NM_002205, exon 30 of 30)	-4252	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
85472	chr16	50684801	50686300	+	0	NA	Intergenic	Intergenic	-4238	NM_001144972	124460		NM_153337	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
223725	chr8	144467601	144469030	+	0	NA	intron (NM_145754, intron 7 of 16)	intron (NM_145754, intron 7 of 16)	1978	NM_001369769	90990		NM_145754	ENSG00000167702	KIFC2	-	kinesin family member C2	protein-coding
153560	chr22	26645001	26645780	+	0	NA	Intergenic	Intergenic	-12092	NR_033321	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
105178	chr17	82280551	82280650	+	0	NA	Intergenic	AluJo|SINE|Alu	-6850	NR_110578	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
182156	chr5	56534221	56534480	+	0	NA	intron (NR_161255, intron 3 of 5)	intron (NR_161255, intron 3 of 5)	-52581	NR_104664	102467147		NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
137620	chr2	197309421	197311980	+	0	NA	promoter-TSS (NM_001367496)	promoter-TSS (NM_001367496)	80	NM_153697	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
31898	chr10	100345121	100345730	+	0	NA	Intergenic	AluSx|SINE|Alu	-1808	NM_005063	6319		NM_005063	ENSG00000099194	SCD	FADS5|MSTP008|SCD1|SCDOS|hSCD1	stearoyl-CoA desaturase	protein-coding
12934	chr1	110672701	110673700	+	0	NA	exon (NM_002232, exon 1 of 1)	exon (NM_002232, exon 1 of 1)	254	NR_109845	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
229015	chr9	113705321	113705780	+	0	NA	Intergenic	Intergenic	111421	NM_001276262	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
237126	chrX	106607921	106608530	+	0	NA	Intergenic	Intergenic	-3705	NM_001184782	55086		NM_018015	ENSG00000147231	RADX	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein-coding
170489	chr3	186107321	186108400	+	0	NA	intron (NM_004454, intron 1 of 12)	CpG	1229	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
176261	chr4	87000501	87001100	+	0	NA	intron (NM_001166693, intron 2 of 20)	intron (NM_001166693, intron 2 of 20)	-6188	NM_001313959	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
215447	chr7	157871851	157872500	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	17590	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
22361	chr1	215526501	215526730	+	0	NA	Intergenic	Intergenic	-40689	NM_001319294	51133		NM_016121	ENSG00000136636	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding
153689	chr22	29202471	29203430	+	0	NA	Intergenic	Intergenic	-2946	NM_133455	129080		NM_133455	ENSG00000186998	EMID1	EMI5|EMU1	EMI domain containing 1	protein-coding
66814	chr14	64745551	64746050	+	0	NA	TTS (NM_001024858)	TTS (NM_001024858)	39886	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
195263	chr6	36441171	36441750	+	0	NA	intron (NM_152990, intron 1 of 4)	MLT1J1|LTR|ERVL-MaLR	-1307	NM_001286580	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
209420	chr7	76354571	76354930	+	0	NA	intron (NM_012479, intron 1 of 1)	intron (NM_012479, intron 1 of 1)	4241	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
164929	chr3	71206821	71207080	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	38127	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
210527	chr7	100230121	100230530	+	0	NA	intron (NR_166147, intron 2 of 4)	AluSx|SINE|Alu	11077	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
143561	chr20	31611551	31611850	+	0	NA	Intergenic	Intergenic	4514	NR_036161	100422904		NR_036161	ENSG00000264395	MIR3193	-	microRNA 3193	ncRNA
224394	chr9	13279651	13279750	+	0	NA	promoter-TSS (NM_001330637)	promoter-TSS (NM_001330637)	-8	NM_001330637	8777		NM_003829	ENSG00000107186	MPDZ	HYC2|MUPP1	multiple PDZ domain crumbs cell polarity complex component	protein-coding
78872	chr15	100580401	100580950	+	0	NA	exon (NM_001040616, exon 2 of 7)	exon (NM_001040616, exon 2 of 7)	-21392	NR_073405	441733		NR_073405		PRKXP1	-	PRKX pseudogene 1	pseudo
212849	chr7	130841531	130842150	+	0	NA	Intergenic	LTR1A1|LTR|ERV1	34970	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
31191	chr10	91210121	91210950	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-9616	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
35199	chr11	803601	803800	+	0	NA	intron (NM_145886, intron 2 of 15)	intron (NM_145886, intron 2 of 15)	1531	NM_145886	55367		NM_018494	ENSG00000177595	PIDD1	LRDD|MRT75|PIDD	p53-induced death domain protein 1	protein-coding
197431	chr6	73651371	73651950	+	0	NA	intron (NM_001382631, intron 1 of 11)	AluY|SINE|Alu	2332	NM_001382635	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
144051	chr20	33661621	33662080	+	0	NA	promoter-TSS (NM_080825)	promoter-TSS (NM_080825)	-477	NM_080825	128864		NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding
148911	chr21	9007651	9007830	+	0	NA	Intergenic	AluY|SINE|Alu	20123	NR_162105	113218501		NR_162105		MIR10396A	-	microRNA 10396a	ncRNA
33532	chr10	119262101	119262300	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	54629	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
26914	chr10	26463521	26463980	+	0	NA	intron (NM_019043, intron 2 of 14)	L1PA8|LINE|L1	25409	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
238412	chrX	150574921	150576180	+	0	NA	intron (NM_001376908, intron 1 of 14)	MER5A1|DNA|hAT-Charlie	6929	NM_000252	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
183491	chr5	79272571	79272730	+	0	NA	intron (NM_152405, intron 1 of 10)	AluSz6|SINE|Alu	36519	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
151980	chr22	19151501	19151850	+	0	NA	Intergenic	Intergenic	-1383	NM_005315	2928		NM_005315	ENSG00000063515	GSC2	GSCL	goosecoid homeobox 2	protein-coding
89400	chr16	88819021	88819480	+	0	NA	intron (NM_000512, intron 12 of 13)	intron (NM_000512, intron 12 of 13)	-7322	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
75852	chr15	69574021	69574500	+	0	NA	Intergenic	Intergenic	12540	NR_026979	145837		NR_026979	ENSG00000245750	DRAIC	-	downregulated RNA in cancer, inhibitor of cell invasion and migration	ncRNA
88234	chr16	82171801	82172200	+	0	NA	Intergenic	Intergenic	-1776	NM_005792	10200		NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
89168	chr16	88540851	88541450	+	0	NA	Intergenic	Intergenic	-10097	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
172485	chr4	2237101	2237330	+	0	NA	intron (NM_024511, intron 3 of 4)	AluJr4|SINE|Alu	4906	NM_001303143	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
164194	chr3	56825771	56826130	+	0	NA	intron (NM_001289698, intron 2 of 10)	MLT1K|LTR|ERVL-MaLR	-24001	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
3915	chr1	17356871	17357230	+	0	NA	intron (NM_012387, intron 13 of 15)	intron (NM_012387, intron 13 of 15)	-15146	NM_207421	353238		NM_207421	ENSG00000276747	PADI6	OZEMA16|PREMBL2|hPADVI	peptidyl arginine deiminase 6	protein-coding
231482	chr9	131366971	131367130	+	0	NA	Intergenic	LTR35A|LTR|ERV1	-6601	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
183760	chr5	81719951	81721330	+	0	NA	intron (NM_001256733, intron 1 of 15)	MamRTE1|LINE|RTE-BovB	30613	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
141981	chr20	1364051	1364550	+	0	NA	intron (NR_040047, intron 1 of 2)	intron (NR_040047, intron 1 of 2)	28661	NR_106929	102465524		NR_106929	ENSG00000284436	MIR6869	hsa-mir-6869	microRNA 6869	ncRNA
88452	chr16	84959171	84959330	+	0	NA	Intergenic	Intergenic	52285	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
125811	chr2	24074751	24075050	+	0	NA	intron (NM_016047, intron 1 of 3)	AluSx1|SINE|Alu	1426	NM_016047	51639		NM_016047	ENSG00000115128	SF3B6	CGI-110|HSPC175|Ht006|P14|SAP14|SAP14a|SF3B14|SF3B14a	splicing factor 3b subunit 6	protein-coding
36753	chr11	9344171	9344330	+	0	NA	Intergenic	Intergenic	-29657	NM_001165030	440026		NM_015012	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
210370	chr7	99598051	99598380	+	0	NA	promoter-TSS (NM_001195543)	promoter-TSS (NM_001195543)	-52	NM_001195542	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
172618	chr4	2516151	2516530	+	0	NA	TTS (NM_002938)	TTS (NM_002938)	-19035	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
10220	chr1	62508251	62508350	+	0	NA	intron (NM_033407, intron 33 of 48)	intron (NM_033407, intron 33 of 48)	71251	NM_003368	7398		NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
18843	chr1	167709671	167709830	+	0	NA	Intergenic	Intergenic	-12232	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
89861	chr16	89619051	89619350	+	0	NA	intron (NM_001128141, intron 1 of 10)	intron (NM_001128141, intron 1 of 10)	-1397	NM_004413	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
118990	chr19	38884051	38884350	+	0	NA	intron (NR_034146, intron 6 of 13)	intron (NR_034146, intron 6 of 13)	-5925	NM_001195833	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
125536	chr2	14903801	14904000	+	0	NA	Intergenic	Intergenic	271183	NM_001369364	151354		NM_145175	ENSG00000162981	LRATD1	FAM84A|NSE1|PP11517	LRAT domain containing 1	protein-coding
158910	chr3	9982821	9983850	+	0	NA	intron (NM_018447, intron 2 of 8)	AluSz|SINE|Alu	-3558	NR_103821	442075		NM_001013730		EMC3-AS1	-	EMC3 antisense RNA 1	ncRNA
210845	chr7	101058321	101058700	+	0	NA	non-coding (NR_133665, exon 12 of 12)	non-coding (NR_133665, exon 12 of 12)	-26971	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
154050	chr22	30594701	30595480	+	0	NA	intron (NM_001282327, intron 2 of 16)	intron (NM_001282327, intron 2 of 16)	-3180	NM_014303	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
84804	chr16	31069121	31069530	+	0	NA	intron (NM_024706, intron 1 of 2)	L2a|LINE|L2	4177	NM_001172668	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
5717	chr1	26398401	26398600	+	0	NA	Intergenic	AluY|SINE|Alu	-12317	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
118646	chr19	37299001	37299530	+	0	NA	Intergenic	SST1|Satellite|centr	-13572	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
35027	chr11	560001	561730	+	0	NA	promoter-TSS (NM_001143994)	promoter-TSS (NM_001143994)	-105	NM_001143993	8045		NM_003475	ENSG00000099849	RASSF7	C11orf13|CFAP88|FAP88|HRAS1|HRC1	Ras association domain family member 7	protein-coding
53296	chr12	64455851	64456580	+	0	NA	intron (NM_013254, intron 2 of 20)	intron (NM_013254, intron 2 of 20)	4095	NM_013254	29110		NM_013254	ENSG00000183735	TBK1	FTDALS4|IIAE8|NAK|T2K	TANK binding kinase 1	protein-coding
92638	chr17	10136021	10136280	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	62456	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
159249	chr3	12929171	12929330	+	0	NA	intron (NM_014869, intron 3 of 13)	MIR|SINE|MIR	38480	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
218140	chr8	41723301	41723500	+	0	NA	intron (NM_020475, intron 8 of 41)	intron (NM_020475, intron 8 of 41)	-58126	NM_020480	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
221872	chr8	128393551	128393850	+	0	NA	Intergenic	MIRb|SINE|MIR	170979	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
163221	chr3	50253001	50253480	+	0	NA	intron (NM_002070, intron 4 of 8)	intron (NM_002070, intron 4 of 8)	6330	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
83380	chr16	26592371	26592530	+	0	NA	Intergenic	AluY|SINE|Alu	-474477	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
162388	chr3	48091221	48091480	+	0	NA	Intergenic	AluJr|SINE|Alu	-2502	NM_001384844	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
232246	chr9	134393451	134394450	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	-12610	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
112824	chr19	7519751	7520300	+	0	NA	exon (NM_018083, exon 2 of 2)	exon (NM_018083, exon 2 of 2)	-2599	NM_020533	57192		NM_020533	ENSG00000090674	MCOLN1	LECD|MG-2|ML1|ML4|MLIV|MST080|MSTP080|TRP-ML1|TRPM-L1|TRPML1	mucolipin TRP cation channel 1	protein-coding
199707	chr6	125279921	125280330	+	0	NA	intron (NM_016063, intron 4 of 5)	L1PA7|LINE|L1	21842	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
65413	chr14	50825871	50826030	+	0	NA	intron (NM_020921, intron 2 of 30)	intron (NM_020921, intron 2 of 30)	4153	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
17318	chr1	156464121	156465330	+	0	NA	3' UTR (NM_005920, exon 12 of 12)	3' UTR (NM_005920, exon 12 of 12)	25962	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
204457	chr7	4638901	4639380	+	0	NA	Intergenic	L2b|LINE|L2	-43155	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
167400	chr3	128991471	128991630	+	0	NA	5' UTR (NM_001348523, exon 1 of 7)	5' UTR (NM_001348523, exon 1 of 7)	347	NM_001348523	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
134459	chr2	143203551	143203650	+	0	NA	intron (NM_018460, intron 3 of 13)	L1PB4|LINE|L1	74181	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
17582	chr1	156848701	156849630	+	0	NA	intron (NM_014215, intron 6 of 21)	CpG-1855	9952	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
48531	chr12	10197901	10198100	+	0	NA	Intergenic	Intergenic	-14877	NM_001363598	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
175928	chr4	80343771	80344130	+	0	NA	intron (NM_001206997, intron 1 of 6)	L1PA10|LINE|L1	8220	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
122599	chr19	49763551	49763850	+	0	NA	promoter-TSS (NM_021733)	promoter-TSS (NM_021733)	-394	NM_021733	60385		NM_021733	ENSG00000126467	TSKS	PPP1R161|STK22S1|TSKS1|TSSKS	testis specific serine kinase substrate	protein-coding
50527	chr12	47847951	47848130	+	0	NA	intron (NM_000376, intron 7 of 9)	AluY|SINE|Alu	-28137	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
21258	chr1	204385001	204385900	+	0	NA	Intergenic	Intergenic	-15731	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
11170	chr1	87131771	87132430	+	0	NA	non-coding (NR_026985, exon 1 of 4)	non-coding (NR_026985, exon 1 of 4)	174	NR_026985	339524		NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
183517	chr5	79615471	79616230	+	0	NA	intron (NM_173797, intron 2 of 15)	AluJb|SINE|Alu	3409	NM_001349554	167153		NM_173797	ENSG00000164329	TENT2	APD4|GLD2|PAPD4|TUT2	terminal nucleotidyltransferase 2	protein-coding
169898	chr3	177606971	177607130	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	165129	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
98987	chr17	48738721	48739630	+	0	NA	Intergenic	Intergenic	-10425	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
16999	chr1	156006621	156006880	+	0	NA	Intergenic	Intergenic	14201	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
186579	chr5	138494901	138495650	+	0	NA	Intergenic	AluSq|SINE|Alu	29796	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
128463	chr2	55693021	55694050	+	0	NA	intron (NM_033109, intron 1 of 27)	intron (NM_033109, intron 1 of 27)	309	NM_033109	87178		NM_033109	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|SCA25|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
49504	chr12	25331971	25332330	+	0	NA	Intergenic	AluSx|SINE|Alu	-81221	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
112046	chr19	5135751	5136200	+	0	NA	intron (NM_015015, intron 15 of 22)	intron (NM_015015, intron 15 of 22)	166862	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
18913	chr1	168398721	168399250	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	23461	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
44561	chr11	108218501	108218730	+	0	NA	intron (NM_001321307, intron 1 of 17)	intron (NM_001321307, intron 1 of 17)	4023	NM_001321307	4863		NM_002519	ENSG00000149308	NPAT	E14|E14/NPAT|p220	nuclear protein, coactivator of histone transcription	protein-coding
123179	chr19	52296621	52298350	+	0	NA	intron (NM_144684, intron 1 of 4)	CpG	316	NM_001297624	147657		NM_144684	ENSG00000198464	ZNF480	-	zinc finger protein 480	protein-coding
5771	chr1	26498521	26499080	+	0	NA	Intergenic	AluJb|SINE|Alu	26360	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
60526	chr13	41425421	41426550	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-16579	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
33435	chr10	119020671	119021030	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-8864	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
48040	chr12	6963171	6963400	+	0	NA	promoter-TSS (NR_135032)	promoter-TSS (NR_135032)	40	NR_135032	105369635		NR_135032	ENSG00000257084	MIR200CHG	U47924.27	MIR200C and MIR141 host gene	ncRNA
169962	chr3	179181151	179181330	+	0	NA	intron (NM_006218, intron 1 of 20)	intron (NM_006218, intron 1 of 20)	32883	NM_006218	5290		NM_006218	ENSG00000121879	PIK3CA	CCM4|CLAPO|CLOVE|CWS5|HMH|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding
7718	chr1	36098721	36099000	+	0	NA	exon (NM_005202, exon 4 of 4)	exon (NM_005202, exon 4 of 4)	9968	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
126117	chr2	26036121	26036830	+	0	NA	intron (NM_016131, intron 1 of 5)	AluSx4|SINE|Alu	2391	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
196210	chr6	42774051	42774500	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	-9221	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
145021	chr20	37976951	37977050	+	0	NA	Intergenic	Intergenic	56456	NM_014657	9675		NM_014657	ENSG00000101407	TTI1	KIAA0406|NEDMIM|smg-10	TELO2 interacting protein 1	protein-coding
155020	chr22	37425071	37425300	+	0	NA	intron (NM_052906, intron 1 of 2)	intron (NM_052906, intron 1 of 2)	2285	NR_110512	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
11710	chr1	91867821	91868080	+	0	NA	intron (NM_001195684, intron 2 of 17)	AluSx|SINE|Alu	18201	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
239112	chrY	11293821	11294280	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	1127540	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
88555	chr16	85518901	85520330	+	0	NA	Intergenic	(CATCAC)n|Simple_repeat|Simple_repeat	-91794	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
183203	chr5	76099301	76099780	+	0	NA	intron (NM_014979, intron 1 of 12)	intron (NM_014979, intron 1 of 12)	16157	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
26844	chr10	24727701	24728030	+	0	NA	Intergenic	AluSz|SINE|Alu	-3978	NM_001367447	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
73093	chr15	40941401	40942750	+	0	NA	Intergenic	CpG	-11396	NM_001142776	79094		NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
63297	chr13	113981151	113982000	+	0	NA	intron (NM_001320822, intron 23 of 23).2	intron (NM_001320822, intron 23 of 23).2	-7499	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
129163	chr2	68045521	68045600	+	0	NA	intron (NM_006333, intron 4 of 4)	intron (NM_006333, intron 4 of 4)	17444	NM_173177	10438		NM_006333	ENSG00000197223	C1D	LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
192941	chr6	27777301	27777830	+	0	NA	Intergenic	Intergenic	15821	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
135429	chr2	161164251	161164780	+	0	NA	intron (NM_001199135, intron 1 of 7)	intron (NM_001199135, intron 1 of 7)	4087	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
205427	chr7	16660921	16661350	+	0	NA	promoter-TSS (NM_001362717)	promoter-TSS (NM_001362717)	-79	NM_001362717	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
171088	chr3	195487921	195488380	+	0	NA	Intergenic	Intergenic	-45130	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
220296	chr8	98064271	98064850	+	0	NA	promoter-TSS (NM_001170806)	promoter-TSS (NM_001170806)	-8	NM_173549	203111		NM_173549	ENSG00000177459	ERICH5	C8orf47	glutamate rich 5	protein-coding
184934	chr5	112978771	112979230	+	0	NA	intron (NR_038352, intron 1 of 8)	intron (NR_038352, intron 1 of 8)	2202	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
165731	chr3	105365971	105367400	+	0	NA	promoter-TSS (NM_001627)	promoter-TSS (NM_001627)	-28	NM_001243283	214		NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
16075	chr1	153494821	153495350	+	0	NA	Intergenic	Intergenic	-34434	NM_002963	6278		NM_002963	ENSG00000143556	S100A7	PSOR1|S100A7c	S100 calcium binding protein A7	protein-coding
44292	chr11	102318371	102319530	+	0	NA	intron (NM_182962, intron 1 of 9)	L2c|LINE|L2	1466	NM_001165	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
62272	chr13	98576701	98578080	+	0	NA	promoter-TSS (NM_001032296)	promoter-TSS (NM_001032296)	135	NR_046542	100874069		NR_046542		STK24-AS1	-	STK24 antisense RNA 1	ncRNA
190697	chr6	193601	194680	+	0	NA	intron (NR_126020, intron 2 of 7)	intron (NR_126020, intron 2 of 7)	11344	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
174608	chr4	40274971	40275530	+	0	NA	Intergenic	Intergenic	-31935	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
4085	chr1	19113621	19113900	+	0	NA	exon (NM_020765, exon 77 of 106)	exon (NM_020765, exon 77 of 106)	96506	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
10421	chr1	65423871	65424250	+	0	NA	intron (NM_001198681, intron 2 of 4)	MIRb|SINE|MIR	3344	NM_001198681	54741		NM_017526	ENSG00000213625	LEPROT	LEPR|OB-RGRP|OBRGRP|VPS55	leptin receptor overlapping transcript	protein-coding
166287	chr3	112514521	112514880	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-15228	NM_001085357	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
33957	chr10	124638471	124638830	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-65378	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
202829	chr6	159726451	159728160	+	0	NA	promoter-TSS (NM_001322819)	promoter-TSS (NM_001322819)	79	NM_001322819	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
132827	chr2	110575001	110575530	+	0	NA	intron (NM_001384363, intron 1 of 22).2	AluSx3|SINE|Alu	1635	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
200547	chr6	136263921	136264500	+	0	NA	intron (NM_001363659, intron 10 of 11)	intron (NM_001363659, intron 10 of 11)	-13899	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
130549	chr2	85695971	85696330	+	0	NA	intron (NM_006433, intron 3 of 4)	intron (NM_006433, intron 3 of 4)	1792	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
219440	chr8	72155101	72155630	+	0	NA	Intergenic	Intergenic	-79781	NM_007332	8989		NM_007332	ENSG00000104321	TRPA1	ANKTM1|FEPS|FEPS1|p120	transient receptor potential cation channel subfamily A member 1	protein-coding
84264	chr16	30040451	30040750	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-4070	NM_001352173	83723		NM_031478	ENSG00000149926	TLCD3B	CORD22|FAM57B|FP1188	TLC domain containing 3B	protein-coding
89201	chr16	88591421	88592080	+	0	NA	intron (NM_001294340, intron 4 of 18)	L1MB2|LINE|L1	21347	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
17485	chr1	156720301	156720800	+	0	NA	Intergenic	AluY|SINE|Alu	7889	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
178018	chr4	139322201	139322400	+	0	NA	intron (NM_057175, intron 1 of 19)	THE1B|LTR|ERVL-MaLR	-19749	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
115132	chr19	14377971	14379300	+	0	NA	Intergenic	AluSz|SINE|Alu	-2509	NM_001784	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
174958	chr4	49155771	49156280	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	169383	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
170390	chr3	184811551	184813350	+	0	NA	promoter-TSS (NR_146115)	promoter-TSS (NR_146115)	-57	NM_001349295	23355		NM_015303	ENSG00000156931	VPS8	KIAA0804	VPS8 subunit of CORVET complex	protein-coding
45936	chr11	121249121	121249430	+	0	NA	Intergenic	Intergenic	-43496	NM_006918	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
184078	chr5	93582721	93583350	+	0	NA	promoter-TSS (NM_005654)	promoter-TSS (NM_005654)	-187	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
96409	chr17	40158151	40158450	+	0	NA	intron (NM_007359, intron 3 of 13)	intron (NM_007359, intron 3 of 13)	-3633	NR_106926	102466986		NR_106926	ENSG00000284144	MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
25443	chr10	6588071	6588230	+	0	NA	Intergenic	Intergenic	-7504	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
72749	chr15	39608771	39608930	+	0	NA	intron (NM_001324338, intron 11 of 11)	L1MA7|LINE|L1	27771	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
231726	chr9	131773651	131774230	+	0	NA	Intergenic	Intergenic	-33864	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
77103	chr15	78927551	78927650	+	0	NA	intron (NM_001319137, intron 10 of 12)	intron (NM_001319137, intron 10 of 12)	17446	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
12047	chr1	98052921	98053180	+	0	NA	Intergenic	Intergenic	-3357	NR_046105	400765		NM_001001688	ENSG00000225206	MIR137HG	-	MIR137 host gene	ncRNA
37038	chr11	12174471	12174980	+	0	NA	intron (NR_144415, intron 2 of 26)	L1MB3|LINE|L1	11042	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
220268	chr8	97711501	97712100	+	0	NA	intron (NM_178812, intron 8 of 11)	MER44A|DNA|TcMar-Tigger	-63988	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
134325	chr2	136068821	136069150	+	0	NA	Intergenic	Intergenic	47250	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
200825	chr6	137972501	137972900	+	0	NA	Intergenic	L2a|LINE|L2	-26900	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
196037	chr6	42040951	42041700	+	0	NA	intron (NM_001287434, intron 1 of 4)	intron (NM_001287434, intron 1 of 4)	7569	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
133794	chr2	127787351	127787730	+	0	NA	intron (NM_001006623, intron 1 of 7)	SVA_F|Retroposon|SVA	23631	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
58882	chr13	18503951	18504050	+	0	NA	Intergenic	L1PA4|LINE|L1	236099	NR_047508	100874164		NR_047508		LINC00417	-	long intergenic non-protein coding RNA 417	ncRNA
132545	chr2	106188421	106188680	+	0	NA	intron (NR_165308, intron 1 of 14)	HAL1|LINE|L1	5751	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
90593	chr17	1592751	1593250	+	0	NA	intron (NM_152346, intron 6 of 13).2	intron (NM_152346, intron 6 of 13).2	12034	NM_001284499	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
148532	chr20	64116271	64116930	+	0	NA	Intergenic	Intergenic	-9035	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
20438	chr1	198501571	198502330	+	0	NA	Intergenic	L1MB1|LINE|L1	38730	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
82213	chr16	15013951	15015330	+	0	NA	intron (NM_001324019, intron 8 of 22)	intron (NM_001324019, intron 8 of 22)	-4243	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
127508	chr2	42291571	42292200	+	0	NA	intron (NM_019063, intron 11 of 22)	L1ME3A|LINE|L1	68153	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
102844	chr17	76475421	76475780	+	0	NA	intron (NR_164787, intron 9 of 18)	AluSx1|SINE|Alu	7997	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
225235	chr9	34210401	34210830	+	0	NA	intron (NM_001171203, intron 2 of 7)	AluSx|SINE|Alu	31572	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
62625	chr13	100672371	100672780	+	0	NA	intron (NM_001350576, intron 1 of 18)	AluJr|SINE|Alu	2220	NM_001350577	84899		NM_032813	ENSG00000125247	TMTC4	DFNB122	transmembrane O-mannosyltransferase targeting cadherins 4	protein-coding
179501	chr4	184647101	184647500	+	0	NA	intron (NM_001354783, intron 2 of 7)	intron (NM_001354783, intron 2 of 7)	2147	NM_004346	836		NM_004346	ENSG00000164305	CASP3	CPP32|CPP32B|SCA-1	caspase 3	protein-coding
230524	chr9	128339871	128341000	+	0	NA	promoter-TSS (NM_005094)	promoter-TSS (NM_005094)	-92	NM_005094	10999		NM_005094	ENSG00000167114	SLC27A4	ACSVL4|FATP4|IPS	solute carrier family 27 member 4	protein-coding
165609	chr3	101681501	101682230	+	0	NA	intron (NM_000986, intron 5 of 5)	AluJb|SINE|Alu	-4733	NM_014415	27107		NM_014415	ENSG00000066422	ZBTB11	MRT69|ZNF-U69274|ZNF913	zinc finger and BTB domain containing 11	protein-coding
66944	chr14	65636271	65636700	+	0	NA	intron (NM_001371536, intron 7 of 11)	L1PB1|LINE|L1	165383	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
208120	chr7	58896671	58896930	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1446623	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
52430	chr12	55825871	55827030	+	0	NA	intron (NM_032364, intron 2 of 6)	Alu|SINE|Alu	-3158	NR_036479	440104		NM_001013700	ENSG00000293491	TMEM198B	-	transmembrane protein 198B (pseudogene)	pseudo
85575	chr16	53475371	53476280	+	0	NA	intron (NM_001323609, intron 17 of 20)	L1MB5|LINE|L1	27384	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
108626	chr18	76386851	76387150	+	0	NA	intron (NM_014643, intron 3 of 6)	intron (NM_014643, intron 3 of 6)	-104652	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
235444	chrX	46325471	46325630	+	0	NA	TTS (NR_110388)	TTS (NR_110388)	2124	NR_110388	101927574		NR_110388		LINC01186	ZNF674-1	long intergenic non-protein coding RNA 1186	ncRNA
221976	chr8	129989221	129989830	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	18928	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
165959	chr3	107796721	107797080	+	0	NA	intron (NM_020235, intron 14 of 16)	intron (NM_020235, intron 14 of 16)	81168	NR_024276	151658		NR_015414	ENSG00000241469	LINC00635	-	long intergenic non-protein coding RNA 635	ncRNA
30363	chr10	77875901	77876100	+	0	NA	intron (NM_004747, intron 1 of 31).2	intron (NM_004747, intron 1 of 31).2	50755	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
56036	chr12	110443001	110443200	+	0	NA	intron (NM_001287222, intron 2 of 6)	intron (NM_001287222, intron 2 of 6)	7237	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
32806	chr10	109909971	109911280	+	0	NA	intron (NM_001324132, intron 1 of 19)	L1MC1|LINE|L1	12621	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
45307	chr11	118152351	118153630	+	0	NA	promoter-TSS (NM_001142348)	promoter-TSS (NM_001142348)	-167	NM_174934	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
87010	chr16	68246871	68247030	+	0	NA	intron (NM_001363551, intron 1 of 5)	intron (NM_001363551, intron 1 of 5)	1577	NM_012320	23659		NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	phospholipase A2 group XV	protein-coding
195700	chr6	38700221	38701000	+	0	NA	intron (NM_006708, intron 1 of 5)	intron (NM_006708, intron 1 of 5)	2535	NM_006708	2739		NM_006708	ENSG00000124767	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
36061	chr11	2952521	2952780	+	0	NA	intron (NM_001369382, intron 13 of 15).2	intron (NM_001369382, intron 13 of 15).2	11243	NR_002982	677833		NR_002982	ENSG00000207008	SNORA54	ACA54	small nucleolar RNA, H/ACA box 54	snoRNA
133693	chr2	127174271	127174430	+	0	NA	Intergenic	Intergenic	31417	NM_001001665	339761		NM_001001665	ENSG00000186684	CYP27C1	-	cytochrome P450 family 27 subfamily C member 1	protein-coding
130988	chr2	87728001	87728230	+	0	NA	intron (NR_160651, intron 10 of 14)	MER52-int|LTR|ERV1	-19972	NM_002665	5342		NM_002665	ENSG00000125551	PLGLB2	PLGLA|PLGLA1|PLGP1|PLGP2|PRGA	plasminogen like B2	protein-coding
57543	chr12	122163021	122163580	+	0	NA	Intergenic	Intergenic	-4419	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
13088	chr1	111594101	111594650	+	0	NA	intron (NM_001370216, intron 1 of 7)	AluJb|SINE|Alu	13943	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
172868	chr4	3305221	3306350	+	0	NA	Intergenic	MLT1F2-int|LTR|ERVL-MaLR	-8362	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
235050	chrX	40107401	40107980	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG-29594	-9732	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
208674	chr7	73220401	73220600	+	0	NA	promoter-TSS (NR_003186)	promoter-TSS (NR_003186)	-139	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
1317	chr1	2406821	2407400	+	0	NA	intron (NM_153818, intron 3 of 5)	intron (NM_153818, intron 3 of 5)	5454	NM_002617	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
221588	chr8	125427171	125427800	+	0	NA	Intergenic	Intergenic	-2873	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
24551	chr1	244860521	244861230	+	0	NA	intron (NM_031844, intron 3 of 13)	intron (NM_031844, intron 3 of 13)	3650	NM_004501	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
45109	chr11	117105401	117106380	+	0	NA	Intergenic	AluJb|SINE|Alu	-7462	NM_001366687	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
180754	chr5	32133471	32134030	+	0	NA	intron (NM_022130, intron 3 of 3)	Charlie7|DNA|hAT-Charlie	40569	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
89886	chr16	89657171	89658930	+	0	NA	promoter-TSS (NR_073516)	promoter-TSS (NR_073516)	3	NM_001271909	124045		NM_153025	ENSG00000167523	SPATA33	C16orf55	spermatogenesis associated 33	protein-coding
41101	chr11	65536751	65537180	+	0	NA	intron (NM_001048218, intron 13 of 17)	intron (NM_001048218, intron 13 of 17)	11882	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
17296	chr1	156442371	156442730	+	0	NA	Intergenic	Intergenic	-13002	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
143114	chr20	23407901	23408380	+	0	NA	intron (NR_104266, intron 1 of 10)	intron (NR_104266, intron 1 of 10)	13348	NR_104266	63908		NM_022080	ENSG00000125814	NAPB	DEE107|SNAP-BETA|SNAPB	NSF attachment protein beta	protein-coding
16493	chr1	154772621	154772880	+	0	NA	intron (NM_170782, intron 2 of 7)	MER21C|LTR|ERVL	87126	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
96670	chr17	40818371	40819400	+	0	NA	promoter-TSS (NR_160888)	promoter-TSS (NR_160888)	-260	NR_160887	147184		NM_145274	ENSG00000167920	KRT10-AS1	TMEM99	KRT10 antisense RNA 1	ncRNA
131673	chr2	97707421	97708030	+	0	NA	Intergenic	Intergenic	-5851	NM_001079	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
164838	chr3	71026371	71026730	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	38374	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
111621	chr19	4118171	4118530	+	0	NA	intron (NM_030662, intron 1 of 10)	intron (NM_030662, intron 1 of 10)	5772	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
130576	chr2	85814001	85814730	+	0	NA	promoter-TSS (NR_038888)	promoter-TSS (NR_038888)	-765	NR_038888	284950		NR_038888		LOC284950	-	uncharacterized LOC284950	ncRNA
184162	chr5	95718201	95718800	+	0	NA	intron (NM_001349303, intron 2 of 8)	L2|LINE|L2	-12836	NM_014899	22836		NM_014899	ENSG00000164292	RHOBTB3	-	Rho related BTB domain containing 3	protein-coding
122708	chr19	49935201	49935930	+	0	NA	Intergenic	AluJr|SINE|Alu	2501	NR_039906	100616483		NR_039906	ENSG00000283842	MIR4751	-	microRNA 4751	ncRNA
139648	chr2	226790851	226792330	+	0	NA	intron (NM_005544, intron 1 of 1)	CpG	8230	NM_005544	3667		NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
53318	chr12	64608701	64609600	+	0	NA	Intergenic	Intergenic	-1345	NR_040718	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
223996	chr9	2132501	2132780	+	0	NA	intron (NM_003070, intron 27 of 33)	intron (NM_003070, intron 27 of 33)	-25022	NM_001289398	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
67462	chr14	70824871	70825050	+	0	NA	Intergenic	Intergenic	-15447	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
125661	chr2	20053551	20053650	+	0	NA	Intergenic	AluSp|SINE|Alu	-1972	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
53582	chr12	67697271	67697980	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	31850	NR_110063	101927901		NR_110063	ENSG00000255970	LINC02421	-	long intergenic non-protein coding RNA 2421	ncRNA
212972	chr7	130972251	130972500	+	0	NA	intron (NR_109851, intron 4 of 5)	L1MB1|LINE|L1	58911	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
106378	chr18	13294321	13294580	+	0	NA	intron (NM_001378099, intron 2 of 6)	intron (NM_001378099, intron 2 of 6)	17088	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207448	chr7	44575471	44576150	+	0	NA	Intergenic	AluY|SINE|Alu	-1272	NM_019082	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
8138	chr1	39278901	39279100	+	0	NA	intron (NM_012090, intron 5 of 92)	MamRep605|LTR?|LTR?	-130073	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
228518	chr9	100411201	100412180	+	0	NA	Intergenic	CpG	-15453	NM_080655	91283		NM_080655	ENSG00000066697	MSANTD3	C9orf30|L8	Myb/SANT DNA binding domain containing 3	protein-coding
233318	chr9	137427071	137427230	+	0	NA	intron (NM_001256068, intron 2 of 11)	Ricksha_0|DNA|MULE-MuDR	3755	NM_001256068	10811		NM_006647	ENSG00000188747	NOXA1	NY-CO-31|SDCCAG31|p51NOX	NADPH oxidase activator 1	protein-coding
41808	chr11	66956551	66957180	+	0	NA	intron (NM_001040716, intron 1 of 22)	intron (NM_001040716, intron 1 of 22)	1518	NM_000920	5091		NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
170738	chr3	188202401	188202600	+	0	NA	intron (NM_001375462, intron 1 of 11)	intron (NM_001375462, intron 1 of 11)	-10212	NM_001375465	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
61911	chr13	77592951	77593360	+	0	NA	intron (NM_003843, intron 11 of 31)	intron (NM_003843, intron 11 of 31)	13396	NR_126412	104355296		NR_126412	ENSG00000224347	SCEL-AS1	-	SCEL antisense RNA 1	ncRNA
65919	chr14	55323851	55324280	+	0	NA	intron (NM_152231, intron 1 of 1)	L1MB7|LINE|L1	51911	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
142423	chr20	3901101	3901650	+	0	NA	intron (NM_001324191, intron 2 of 7)	L1MEd|LINE|L1	11559	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
121924	chr19	48442551	48442650	+	0	NA	exon (NM_000836, exon 14 of 14)	exon (NM_000836, exon 14 of 14)	-3383	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
10509	chr1	66769371	66770280	+	0	NA	intron (NM_152665, intron 2 of 4)	intron (NM_152665, intron 2 of 4)	17366	NM_152665	200132		NM_152665	ENSG00000152760	DYNLT5	TCTEX1D1	dynein light chain Tctex-type family member 5	protein-coding
117177	chr19	19353621	19353880	+	0	NA	intron (NM_015329, intron 16 of 18)	intron (NM_015329, intron 16 of 18)	-32093	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
115964	chr19	16894271	16894500	+	0	NA	non-coding (NR_147452, exon 3 of 3)	non-coding (NR_147452, exon 3 of 3)	2562	NR_147452	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
148905	chr21	8806801	8807280	+	0	NA	Intergenic	Intergenic	-179959	NR_037421	100500862		NR_037421	ENSG00000275708	MIR3648-1	MIR3648|hsa-mir-3648-1	microRNA 3648-1	ncRNA
181556	chr5	43128451	43129030	+	0	NA	intron (NM_001330710, intron 3 of 5)	intron (NM_001330710, intron 3 of 5)	7175	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
114220	chr19	11453851	11454580	+	0	NA	3' UTR (NM_032281, exon 7 of 7)	3' UTR (NM_032281, exon 7 of 7)	-18433	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
129310	chr2	68701851	68702150	+	0	NA	Intergenic	L1PA16|LINE|L1	-32811	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
131774	chr2	98481051	98481350	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	35190	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
2086	chr1	7951821	7952400	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-9544	NM_001123377	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
79760	chr16	1358471	1359880	+	0	NA	intron (NM_032520, intron 3 of 10)	L1M4c|LINE|L1	7244	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
169134	chr3	155907901	155908300	+	0	NA	intron (NM_003875, intron 5 of 15)	L2a|LINE|L2	37450	NM_003875	8833		NM_003875	ENSG00000163655	GMPS	GATD7	guanine monophosphate synthase	protein-coding
209856	chr7	90321801	90322000	+	0	NA	promoter-TSS (NM_001384237)	promoter-TSS (NM_001384237)	-917	NM_001384237	107986818		NM_001384237	ENSG00000283267	FAM237B	-	family with sequence similarity 237 member B	protein-coding
180653	chr5	17522901	17523100	+	0	NA	Intergenic	Intergenic	-30924	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
208773	chr7	73559251	73559580	+	0	NA	Intergenic	AluJo|SINE|Alu	-1725	NM_001197244	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
91074	chr17	3038751	3039100	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	24682	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
87641	chr16	74560151	74560450	+	0	NA	intron (NM_001145667, intron 1 of 25)	MLT2B4|LTR|ERVL	46814	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
148655	chr21	6112671	6113000	+	0	NA	exon (NM_001320643, exon 3 of 14)	exon (NM_001320643, exon 3 of 14)	1704	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
141458	chr2	241055571	241056130	+	0	NA	intron (NM_001080437, intron 16 of 31)	intron (NM_001080437, intron 16 of 31)	46437	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
136155	chr2	174336501	174337100	+	0	NA	exon (NM_001145250, exon 2 of 2)	exon (NM_001145250, exon 2 of 2)	1846	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
28608	chr10	58177301	58177630	+	0	NA	Intergenic	Intergenic	90429	NM_152230	253430		NM_152230	ENSG00000151151	IPMK	-	inositol polyphosphate multikinase	protein-coding
223640	chr8	144340201	144340600	+	0	NA	Intergenic	Intergenic	-3918	NM_031309	83482		NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding
29835	chr10	72329721	72330330	+	0	NA	Intergenic	Intergenic	24894	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
73475	chr15	43579371	43579700	+	0	NA	intron (NM_001354382, intron 10 of 30)	(TA)n|Simple_repeat|Simple_repeat	5357	NM_014659	9677		NM_014659	ENSG00000168781	PPIP5K1	HISPPD2A|IP6K|IPS1|VIP1|hsVIP1	diphosphoinositol pentakisphosphate kinase 1	protein-coding
125805	chr2	24049051	24050450	+	0	NA	promoter-TSS (NM_001322963)	promoter-TSS (NM_001322963)	9	NR_136536	2281		NM_004116	ENSG00000119782	FKBP1B	FKBP12.6|FKBP1L|OTK4|PKBP1L|PPIase	FKBP prolyl isomerase 1B	protein-coding
123146	chr19	52165471	52165630	+	0	NA	intron (NM_001102657, intron 3 of 4)	intron (NM_001102657, intron 3 of 4)	6071	NM_001102657	162962		NM_001102657	ENSG00000196267	ZNF836	-	zinc finger protein 836	protein-coding
194945	chr6	35261771	35262000	+	0	NA	intron (NM_003427, intron 1 of 13)	intron (NM_003427, intron 1 of 13)	2150	NM_001292032	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
196804	chr6	46010801	46012550	+	0	NA	intron (NM_001370649, intron 1 of 5)	intron (NM_001370649, intron 1 of 5)	4185	NM_016929	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
54877	chr12	95653301	95653500	+	0	NA	intron (NR_077225, intron 1 of 4)	AluJb|SINE|Alu	4145	NR_077225	100132594		NR_077225	ENSG00000293270	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
112079	chr19	5336421	5336880	+	0	NA	intron (NM_130853, intron 1 of 28)	intron (NM_130853, intron 1 of 28)	4162	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
175765	chr4	77778401	77779200	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluY|SINE|Alu	40264	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
137745	chr2	197857101	197857500	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	52707	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
79795	chr16	1392351	1392650	+	0	NA	intron (NM_001372107, intron 8 of 14)	AluSx1|SINE|Alu	-12848	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
73323	chr15	41934071	41935290	+	0	NA	intron (NM_139265, intron 3 of 5)	intron (NM_139265, intron 3 of 5)	13263	NR_120332	101928363		NR_120332	ENSG00000259883	EHD4-AS1	-	EHD4 antisense RNA 1	ncRNA
180903	chr5	34188001	34188800	+	0	NA	intron (NR_146599, intron 2 of 11)	THE1B-int|LTR|ERVL-MaLR	-1181	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
169616	chr3	171258171	171258530	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-151591	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
134541	chr2	143723301	143723500	+	0	NA	intron (NM_018460, intron 13 of 13)	intron (NM_018460, intron 13 of 13)	-213667	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
62752	chr13	106619851	106620170	+	0	NA	intron (NR_051977, intron 1 of 3)	intron (NR_051977, intron 1 of 3)	2200	NR_051977	283483		NR_051977	ENSG00000272274	ARGLU1-DT	LINC00551	ARGLU1 divergent transcript	ncRNA
48611	chr12	10362521	10363250	+	0	NA	promoter-TSS (NR_120430)	promoter-TSS (NR_120430)	-884	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
69935	chr14	99596551	99596980	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	7442	NM_001144995	317762		NM_022747	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
64689	chr14	32484721	32485100	+	0	NA	intron (NM_004274, intron 2 of 13)	intron (NM_004274, intron 2 of 13)	155612	NM_004274	9472		NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding
120407	chr19	43779621	43780150	+	0	NA	intron (NM_002250, intron 1 of 8)	intron (NM_002250, intron 1 of 8)	1088	NM_002250	3783		NM_002250	ENSG00000104783	KCNN4	DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium calcium-activated channel subfamily N member 4	protein-coding
168299	chr3	141526671	141527230	+	0	NA	intron (NM_006506, intron 3 of 23)	intron (NM_006506, intron 3 of 23)	39923	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
229334	chr9	120903121	120903380	+	0	NA	3' UTR (NM_001190947, exon 6 of 6)	3' UTR (NM_001190947, exon 6 of 6)	-8354	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
219054	chr8	65793871	65794780	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	-5268	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
32281	chr10	102115801	102116200	+	0	NA	promoter-TSS (NM_003893)	promoter-TSS (NM_003893)	-998	NM_003893	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
221949	chr8	129928851	129928950	+	0	NA	intron (NM_001353279, intron 2 of 13)	L1MB7|LINE|L1	10911	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
229001	chr9	113584001	113584200	+	0	NA	exon (NM_001282922, exon 3 of 8)	exon (NM_001282922, exon 3 of 8)	3172	NM_001282922	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
175839	chr4	78644651	78645000	+	0	NA	Intergenic	Intergenic	-1169	NR_038308	100505702		NR_038303		LINC01094	CTEPHA1	long intergenic non-protein coding RNA 1094	ncRNA
92382	chr17	8246451	8247500	+	0	NA	intron (NM_025099, intron 1 of 22)	(TTAT)n|Simple_repeat|Simple_repeat	1081	NR_046431	80169		NM_025099	ENSG00000178971	CTC1	AAF-132|AAF132|C17orf68|CRMCC|tmp494178	CST telomere replication complex component 1	protein-coding
81303	chr16	4688101	4688830	+	0	NA	3' UTR (NM_001142290, exon 17 of 17)	3' UTR (NM_001142290, exon 17 of 17)	-5228	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
92518	chr17	8901121	8901650	+	0	NA	intron (NM_001142633, intron 5 of 18)	intron (NM_001142633, intron 5 of 18)	11132	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
75647	chr15	67433571	67433730	+	0	NA	intron (NR_040052, intron 3 of 5)	intron (NR_040052, intron 3 of 5)	87323	NR_040055	100506686		NR_040051	ENSG00000259673	IQCH-AS1	-	IQCH antisense RNA 1	ncRNA
93707	chr17	19463051	19464030	+	0	NA	Intergenic	MADE1|DNA|TcMar-Mariner	52308	NM_007148	7732		NM_007148	ENSG00000128482	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
112373	chr19	6020201	6020400	+	0	NA	TTS (NR_046376)	TTS (NR_046376)	41897	NR_046376	100128568		NR_046376	ENSG00000266983	RANBP3-DT	-	RANBP3 divergent transcript	ncRNA
139960	chr2	230871071	230871230	+	0	NA	intron (NM_001012514, intron 1 of 4)	intron (NM_001012514, intron 1 of 4)	6200	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
151756	chr22	17876671	17877350	+	0	NA	intron (NM_001136004, intron 17 of 21)	intron (NM_001136004, intron 17 of 21)	29876	NM_001136004	57553		NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
3921	chr1	17420871	17421030	+	0	NA	intron (NM_018715, intron 6 of 12).2	intron (NM_018715, intron 6 of 12).2	17586	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
133288	chr2	113581871	113582030	+	0	NA	Intergenic	AluJo|SINE|Alu	1146	NR_031632	100302128		NR_031632	ENSG00000221055	MIR1302-3	MIRN1302-3|hsa-mir-1302-3	microRNA 1302-3	ncRNA
132321	chr2	105344771	105345200	+	0	NA	intron (NM_024093, intron 3 of 3)	MER5B|DNA|hAT-Charlie	7445	NM_001286537	79074		NM_024093	ENSG00000135974	C2orf49	asw	chromosome 2 open reading frame 49	protein-coding
6096	chr1	27299621	27299880	+	0	NA	intron (NM_015023, intron 12 of 15)	L2c|LINE|L2	-22395	NM_032125	84065		NM_032125	ENSG00000186501	TMEM222	C1orf160|NEDMOSBA	transmembrane protein 222	protein-coding
164467	chr3	59857551	59858070	+	0	NA	intron (NM_001354590, intron 7 of 8)	intron (NM_001354590, intron 7 of 8)	-199313	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
110075	chr19	1504771	1504930	+	0	NA	TTS (NM_213604)	TTS (NM_213604)	8169	NM_001367197	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
103522	chr17	78478701	78478900	+	0	NA	intron (NM_173628, intron 51 of 80)	(ACC)n|Simple_repeat|Simple_repeat	-6110	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
7942	chr1	37546051	37546600	+	0	NA	intron (NM_024700, intron 2 of 3)	L2|LINE|L2	7968	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
97729	chr17	44369471	44370230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-5997	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
15894	chr1	151542721	151543180	+	0	NA	intron (NM_001126337, intron 1 of 11)	intron (NM_001126337, intron 1 of 11)	2641	NM_001301317	7286		NM_020127	ENSG00000143367	TUFT1	WHSF	tuftelin 1	protein-coding
172437	chr4	1875021	1875380	+	0	NA	intron (NM_001042424, intron 1 of 21)	AluJr4|SINE|Alu	3807	NM_001042424	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
82335	chr16	15888171	15889330	+	0	NA	promoter-TSS (NM_001304497)	promoter-TSS (NM_001304497)	-147	NM_001304502	123811		NM_144600	ENSG00000133393	CEP20	C16orf63|FOPNL|FOR20|PHSECRG2	centrosomal protein 20	protein-coding
158848	chr3	9814201	9814730	+	0	NA	intron (NM_001366051, intron 4 of 12)	AluSx|SINE|Alu	4203	NR_037162	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
83855	chr16	28881571	28881900	+	0	NA	intron (NM_173201, intron 4 of 21)	AluSx1|SINE|Alu	1692	NM_001286075	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
121042	chr19	45818721	45819250	+	0	NA	intron (NM_004819, intron 22 of 26)	intron (NM_004819, intron 22 of 26)	-3677	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
106651	chr18	22935521	22935780	+	0	NA	intron (NM_203292, intron 1 of 17)	intron (NM_203292, intron 1 of 17)	1774	NM_203291	5932		NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JAWAD|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding
27370	chr10	30784801	30785950	+	0	NA	Intergenic	CpG	62156	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
172896	chr4	3480351	3481180	+	0	NA	intron (NM_001301071, intron 4 of 9)	intron (NM_001301071, intron 4 of 9)	-3779	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
188429	chr5	154272771	154273330	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	-74056	NR_031626	100302181		NR_031626	ENSG00000221430	MIR1294	MIRN1294|hsa-mir-1294|mir-1294	microRNA 1294	ncRNA
76488	chr15	74901301	74902080	+	0	NA	non-coding (NR_135853, exon 7 of 7)	non-coding (NR_135853, exon 7 of 7)	5161	NR_135852	57184		NM_020447	ENSG00000178761	FAM219B	C15orf17	family with sequence similarity 219 member B	protein-coding
25819	chr10	11201871	11202180	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	36995	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
229280	chr9	120709171	120709330	+	0	NA	intron (NM_001080497, intron 1 of 5)	AluSg|SINE|Alu	5220	NM_001080497	1955		NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
21811	chr1	207286351	207286450	+	0	NA	Intergenic	Intergenic	-35278	NM_001300903	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
80298	chr16	2263851	2263950	+	0	NA	intron (NM_080594, intron 3 of 7)	FLAM_C|SINE|Alu	3437	NM_001286625	10921		NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
22386	chr1	218349571	218349730	+	0	NA	intron (NM_003238, intron 1 of 6)	intron (NM_003238, intron 1 of 6)	-3972	NR_046268	728463		NR_046268		TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA
223968	chr9	2012271	2012830	+	0	NA	Intergenic	Intergenic	-2797	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
19125	chr1	171515371	171515530	+	0	NA	intron (NM_015172, intron 4 of 33)	intron (NM_015172, intron 4 of 33)	29920	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
200792	chr6	137888971	137889530	+	0	NA	Intergenic	L1PA7|LINE|L1	-21017	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
143636	chr20	31837051	31837350	+	0	NA	Intergenic	Intergenic	8404	NM_004118	2307		NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
21118	chr1	203627851	203628400	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	188	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
179386	chr4	183636951	183637050	+	0	NA	Intergenic	Intergenic	22185	NM_152682	201965		NM_152682	ENSG00000182552	RWDD4	FAM28A|RWDD4A	RWD domain containing 4	protein-coding
96521	chr17	40339001	40339580	+	0	NA	intron (NM_001145302, intron 2 of 6)	intron (NM_001145302, intron 2 of 6)	-2876	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
121199	chr19	46574221	46574780	+	0	NA	intron (NM_001370550, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	26416	NM_001370551	100506012		NM_001205281	ENSG00000291145	PPP5D1P	PPP5D1	PPP5 tetratricopeptide repeat domain containing 1, pseudogene	pseudo
150554	chr21	43089401	43090150	+	0	NA	Intergenic	Intergenic	-12832	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
106901	chr18	25239551	25239850	+	0	NA	intron (NM_015461, intron 3 of 7)	intron (NM_015461, intron 3 of 7)	112466	NM_015461	25925		NM_015461	ENSG00000198795	ZNF521	EHZF|Evi3	zinc finger protein 521	protein-coding
33612	chr10	119577871	119578030	+	0	NA	intron (NM_001033925, intron 7 of 11)	AluSg|SINE|Alu	19079	NM_001323965	7073		NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
34862	chr11	342271	342850	+	0	NA	Intergenic	Intergenic	-21700	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
77078	chr15	78904101	78904300	+	0	NA	Intergenic	L1MEg|LINE|L1	31211	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
6406	chr1	27966401	27966600	+	0	NA	intron (NM_018053, intron 2 of 2)	intron (NM_018053, intron 2 of 2)	6527	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
119257	chr19	39505971	39506130	+	0	NA	intron (NM_016941, intron 6 of 7)	AluSx1|SINE|Alu	7103	NM_203486	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
69457	chr14	94768571	94769330	+	0	NA	intron (NM_173849, intron 2 of 2)	CpG	1163	NM_173849	145258		NM_173849	ENSG00000133937	GSC	GSC1|SAMS	goosecoid homeobox	protein-coding
217949	chr8	38175991	38177880	+	0	NA	promoter-TSS (NM_001204878)	promoter-TSS (NM_001204878)	80	NM_004874	9530		NM_004874	ENSG00000156735	BAG4	BAG-4|SODD	BAG cochaperone 4	protein-coding
59755	chr13	30108551	30109050	+	0	NA	promoter-TSS (NR_046998)	promoter-TSS (NR_046998)	75	NR_046998	100874146		NR_046998	ENSG00000224511	LINC00365	-	long intergenic non-protein coding RNA 365	ncRNA
120044	chr19	41988651	41988950	+	0	NA	intron (NM_001256214, intron 1 of 22)	intron (NM_001256214, intron 1 of 22)	4667	NM_001256213	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
30873	chr10	86757621	86757880	+	0	NA	intron (NM_004329, intron 1 of 12)	MIR|SINE|MIR	1131	NM_004329	657		NM_004329	ENSG00000107779	BMPR1A	10q23del|ACVRLK3|ALK-3|ALK3|BMPR-1A|CD292|SKR5	bone morphogenetic protein receptor type 1A	protein-coding
52932	chr12	57427501	57428780	+	0	NA	intron (NM_001351207, intron 1 of 26)	L2a|LINE|L2	2903	NM_001351212	22864		NM_014925	ENSG00000179912	R3HDM2	CAG6|PR01365	R3H domain containing 2	protein-coding
138793	chr2	216111321	216111930	+	0	NA	intron (NM_021141, intron 1 of 20)	L3|LINE|CR1	2277	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
61152	chr13	48805001	48805600	+	0	NA	Intergenic	Intergenic	151371	NM_001308476	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
186405	chr5	135400721	135401000	+	0	NA	promoter-TSS (NM_004893)	promoter-TSS (NM_004893)	-973	NM_004893	9555		NM_004893	ENSG00000113648	MACROH2A1	H2A.y|H2A/y|H2AF12M|H2AFY|MACROH2A1.1|mH2A1|macroH2A1.2	macroH2A.1 histone	protein-coding
6690	chr1	29166301	29166830	+	0	NA	intron (NM_005626, intron 1 of 5)	intron (NM_005626, intron 1 of 5)	15335	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
190990	chr6	3031901	3032130	+	0	NA	Intergenic	Intergenic	7952	NR_152848	101927759		NR_132750		LOC101927759	-	uncharacterized LOC101927759	ncRNA
194358	chr6	32952601	32953780	+	0	NA	promoter-TSS (NM_006120)	promoter-TSS (NM_006120)	-93	NM_006120	3108		NM_006120	ENSG00000204257	HLA-DMA	D6S222E|DMA|HLADM|RING6	major histocompatibility complex, class II, DM alpha	protein-coding
81061	chr16	4326771	4326930	+	0	NA	intron (NR_110901, intron 1 of 3)	AluSx1|SINE|Alu	1490	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
85069	chr16	32187471	32187630	+	0	NA	intron (NR_135178, intron 1 of 24)	AluYm1|SINE|Alu	563	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
174521	chr4	40066621	40066880	+	0	NA	intron (NM_001318359, intron 1 of 18)	L1MB2|LINE|L1	-9551	NR_027277	344967		NR_027277	ENSG00000293349	LOC344967	ACOT7L|BACHL	acyl-CoA thioesterase 7 pseudogene	pseudo
62556	chr13	99900321	99900880	+	0	NA	intron (NR_104592, intron 8 of 9)	MIRc|SINE|MIR	56565	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
201794	chr6	149985151	149986030	+	0	NA	Intergenic	Intergenic	19554	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
55429	chr12	104509951	104510630	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	53342	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
51421	chr12	52016671	52017900	+	0	NA	Intergenic	L2a|LINE|L2	-5547	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
109016	chr18	79717771	79718000	+	0	NA	exon (NM_001202504, exon 10 of 13)	exon (NM_001202504, exon 10 of 13)	36455	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
87349	chr16	70350551	70350650	+	0	NA	non-coding (NR_135296, exon 2 of 10)	non-coding (NR_135296, exon 2 of 10)	3697	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
47850	chr12	6617571	6618750	+	0	NA	TTS (NM_001142961)	TTS (NM_001142961)	-10781	NM_001273	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
172341	chr4	1706821	1707300	+	0	NA	intron (NM_001306075, intron 1 of 6)	AluYb9|SINE|Alu	5259	NM_001306075	7884		NM_006527	ENSG00000163950	SLBP	HBP	stem-loop histone mRNA binding protein	protein-coding
49713	chr12	31203251	31203350	+	0	NA	Intergenic	Intergenic	-2065	NR_153414	144203		NM_173498	ENSG00000177359	OVOS2	-	alpha-2-macroglobulin like 1 pseudogene	pseudo
151552	chr21	46550221	46551010	+	0	NA	TTS (NM_206889)	TTS (NM_206889)	54467	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
219830	chr8	81720671	81722180	+	0	NA	promoter-TSS (NM_024699)	promoter-TSS (NM_024699)	-121	NR_033194	79752		NM_024699	ENSG00000104231	ZFAND1	-	zinc finger AN1-type containing 1	protein-coding
103726	chr17	78842551	78842650	+	0	NA	Intergenic	AluSz|SINE|Alu	-1161	NM_001385176	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
26721	chr10	22672651	22673450	+	0	NA	intron (NM_005028, intron 1 of 9)	L2c|LINE|L2	41058	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
152017	chr22	19426251	19426550	+	0	NA	intron (NM_003325, intron 1 of 24)	intron (NM_003325, intron 1 of 24)	5333	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
112097	chr19	5569071	5570200	+	0	NA	Intergenic	MIR|SINE|MIR	-1601	NR_027064								
4611	chr1	22095901	22096730	+	0	NA	3' UTR (NM_001039802, exon 7 of 7)	3' UTR (NM_001039802, exon 7 of 7)	43606	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
201693	chr6	149600251	149600550	+	0	NA	intron (NM_007044, intron 7 of 10)	AluSx|SINE|Alu	6784	NR_077247	645958		NR_077247		RPS18P9	RPS18_6_767	ribosomal protein S18 pseudogene 9	pseudo
139305	chr2	219526651	219527700	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	12693	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
138694	chr2	213096251	213096550	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	54037	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
146194	chr20	48768871	48770030	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	58549	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
117042	chr19	18937571	18938050	+	0	NA	intron (NM_001145721, intron 4 of 9)	intron (NM_001145721, intron 4 of 9)	1239	NM_001145724	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
12451	chr1	107788971	107789350	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-100661	NM_001079874	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
4282	chr1	19762221	19762500	+	0	NA	intron (NM_001349115, intron 6 of 9)	intron (NM_001349115, intron 6 of 9)	36989	NM_001349115	255104		NM_181719	ENSG00000162542	TMCO4	-	transmembrane and coiled-coil domains 4	protein-coding
226916	chr9	79576601	79577280	+	0	NA	intron (NM_001351556, intron 4 of 18)	(TA)n|Simple_repeat|Simple_repeat	3763	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
200596	chr6	136644101	136644680	+	0	NA	intron (NM_005923, intron 11 of 29)	intron (NM_005923, intron 11 of 29)	15276	NR_125858	101928461		NR_125858	ENSG00000234263	MAP3K5-AS1	-	MAP3K5 antisense RNA 1	ncRNA
202410	chr6	157879201	157879400	+	0	NA	intron (NM_016224, intron 4 of 17)	L1MC4a|LINE|L1	56054	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
212294	chr7	123771351	123771450	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	19311	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
8568	chr1	41364571	41364950	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	3326	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
70180	chr14	100375321	100376930	+	0	NA	promoter-TSS (NM_001350949)	promoter-TSS (NM_001350949)	202	NM_173701	7453		NM_004184	ENSG00000140105	WARS1	GAMMA-2|HMN9|HMND9|IFI53|IFP53|NEDMSBA|WARS	tryptophanyl-tRNA synthetase 1	protein-coding
50710	chr12	48936251	48937130	+	0	NA	3' UTR (NM_001659, exon 5 of 5)	3' UTR (NM_001659, exon 5 of 5)	-11143	NM_001143782	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
37775	chr11	32297671	32297930	+	0	NA	Intergenic	Intergenic	102600	NM_001367854	7490		NM_000378	ENSG00000184937	WT1	AWT1|GUD|NPHS4|WAGR|WIT-2|WT-1|WT33	WT1 transcription factor	protein-coding
140016	chr2	231004921	231005580	+	0	NA	intron (NM_139073, intron 4 of 4)	(CAC)n|Simple_repeat|Simple_repeat	9126	NM_139073	130560		NM_139073	ENSG00000173699	SPATA3	TSARG1	spermatogenesis associated 3	protein-coding
220247	chr8	97582451	97582750	+	0	NA	Intergenic	Intergenic	-61584	NM_178812	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
222025	chr8	130129601	130129900	+	0	NA	intron (NM_001362924, intron 16 of 30)	intron (NM_001362924, intron 16 of 30)	-44982	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
27529	chr10	32314371	32315030	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	32458	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
199578	chr6	118935001	118936980	+	0	NA	promoter-TSS (NM_001378359)	promoter-TSS (NM_001378359)	-831	NM_001378366	254394		NM_017696	ENSG00000111877	MCM9	C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3	minichromosome maintenance 9 homologous recombination repair factor	protein-coding
190646	chr5	181232451	181232980	+	0	NA	non-coding (NR_045218, exon 3 of 7)	non-coding (NR_045218, exon 3 of 7)	9174	NR_002592	619571		NR_002592	ENSG00000272296	SNORD96A	U96A	small nucleolar RNA, C/D box 96A	snoRNA
166051	chr3	108808121	108808430	+	0	NA	Intergenic	Intergenic	-14511	NM_001317747	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
236398	chrX	71140821	71141280	+	0	NA	intron (NM_005120, intron 42 of 44)	intron (NM_005120, intron 42 of 44)	-3781	NM_001166660	54413		NM_018977	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
191543	chr6	11496071	11496650	+	0	NA	Intergenic	Intergenic	-41389	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
54169	chr12	76777501	76777900	+	0	NA	intron (NM_015336, intron 1 of 16)	MER73|LTR|ERVL	13442	NM_001359626	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
26883	chr10	25934801	25935000	+	0	NA	intron (NM_017433, intron 1 of 34)	CpG	671	NM_001368265	53904		NM_017433	ENSG00000095777	MYO3A	DFNA90|DFNB30	myosin IIIA	protein-coding
22718	chr1	224181851	224184580	+	0	NA	promoter-TSS (NM_001321542)	promoter-TSS (NM_001321542)	-25	NM_001321541	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
23507	chr1	228782021	228782280	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	46671	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
117199	chr19	19383451	19383950	+	0	NA	Intergenic	AluY|SINE|Alu	-2143	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
37614	chr11	20156421	20157280	+	0	NA	intron (NM_001029865, intron 3 of 3)	CpG	3625	NM_001029865	120237		NM_001029865	ENSG00000109851	DBX1	HLX1	developing brain homeobox 1	protein-coding
157119	chr22	42646721	42647530	+	0	NA	promoter-TSS (NM_007326)	promoter-TSS (NM_007326)	-136	NM_001129819	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
135810	chr2	170177801	170178680	+	0	NA	promoter-TSS (NR_045684)	promoter-TSS (NR_045684)	93	NR_045684	140469		NM_138995	ENSG00000071909	MYO3B	-	myosin IIIB	protein-coding
154166	chr22	31294571	31294930	+	0	NA	Intergenic	AluJo|SINE|Alu	-2216	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
220323	chr8	98926871	98927050	+	0	NA	intron (NM_001256312, intron 1 of 12)	intron (NM_001256312, intron 1 of 12)	15650	NM_001256312	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
98033	chr17	45424201	45424400	+	0	NA	intron (NR_169601, intron 4 of 20)	intron (NR_169601, intron 4 of 20)	1333	NR_169604	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
74332	chr15	58496121	58496430	+	0	NA	intron (NR_120338, intron 1 of 2)	MER20|DNA|hAT-Charlie	2460	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
188204	chr5	150691501	150692250	+	0	NA	exon (NM_018047, exon 11 of 11)	exon (NM_018047, exon 11 of 11)	9187	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
152230	chr22	20154421	20154680	+	0	NA	Intergenic	Intergenic	-3495	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
179628	chr4	186144201	186144430	+	0	NA	promoter-TSS (NM_001006655)	promoter-TSS (NM_001006655)	28	NM_001006655	25854		NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
8001	chr1	37999271	38000230	+	0	NA	intron (NM_004468, intron 1 of 5)	intron (NM_004468, intron 1 of 5)	5764	NM_004468	2275		NM_004468	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
63464	chr13	114137921	114138630	+	0	NA	Intergenic	Intergenic	-5652	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
127621	chr2	43058051	43058350	+	0	NA	Intergenic	Intergenic	-18657	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
102434	chr17	75673871	75674230	+	0	NA	intron (NR_126036, intron 3 of 9)	intron (NR_126036, intron 3 of 9)	6712	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
182060	chr5	55940171	55940530	+	0	NA	non-coding (NR_120480, exon 18 of 18)	non-coding (NR_120480, exon 18 of 18)	54613	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
66983	chr14	66545271	66545430	+	0	NA	intron (NM_020806, intron 1 of 22)	SVA_D|Retroposon|SVA	37203	NM_001377516	10243		NM_020806	ENSG00000171723	GPHN	GEPH|GPH|GPHRYN|HKPX1|MOCODC	gephyrin	protein-coding
158361	chr22	50466701	50467300	+	0	NA	intron (NM_002972, intron 5 of 40)	intron (NM_002972, intron 5 of 40)	8035	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
200568	chr6	136282351	136283250	+	0	NA	intron (NM_001301038, intron 1 of 12)	intron (NM_001301038, intron 1 of 12)	7046	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
217588	chr8	29531351	29531630	+	0	NA	Intergenic	LTR39|LTR|ERV1	-180806	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
130772	chr2	86837001	86837830	+	0	NA	TTS (NM_004931)	TTS (NM_004931)	-24410	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
42701	chr11	72667371	72667880	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	1439	NM_001146209	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
16569	chr1	154997401	154997700	+	0	NA	Intergenic	Intergenic	3964	NM_018655	55891		NM_018655	ENSG00000163352	LENEP	LEP503	lens epithelial protein	protein-coding
146929	chr20	51767071	51767650	+	0	NA	intron (NM_006045, intron 1 of 27)	CpG	1030	NM_006045	10079		NM_006045	ENSG00000054793	ATP9A	ATPIIA|NEDGBA	ATPase phospholipid transporting 9A (putative)	protein-coding
195757	chr6	40388071	40388430	+	0	NA	Intergenic	MIRb|SINE|MIR	9913	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
220029	chr8	91040381	91041500	+	0	NA	promoter-TSS (NM_018710)	promoter-TSS (NM_018710)	-81	NM_018710	55529		NM_018710	ENSG00000155099	PIP4P2	TMEM55A	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2	protein-coding
93219	chr17	17832671	17832830	+	0	NA	intron (NM_001005291, intron 1 of 19)	AluY|SINE|Alu	4236	NM_001005291	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
117924	chr19	33079571	33079930	+	0	NA	Intergenic	L1PA15|LINE|L1	-1130	NR_135270	55094		NM_018025	ENSG00000076650	GPATCH1	ECGP|GPATC1	G-patch domain containing 1	protein-coding
160123	chr3	19966651	19966950	+	0	NA	intron (NM_001292048, intron 2 of 5)	AluJr|SINE|Alu	19703	NM_004162	5868		NM_004162	ENSG00000144566	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
236366	chrX	70879051	70879150	+	0	NA	intron (NM_031276, intron 3 of 29)	L1MB8|LINE|L1	29611	NM_001003811	56159		NM_031276	ENSG00000120498	TEX11	MZIP4|SPGFX2|Spo22|TGC1|TSGA3|ZIP4|ZIP4H	testis expressed 11	protein-coding
235834	chrX	49627151	49627680	+	0	NA	Intergenic	Intergenic	28402	NM_001040663	2543		NM_001468	ENSG00000205777	GAGE1	CT4.1|CT4.4|GAGE-1|GAGE-4|GAGE4	G antigen 1	protein-coding
175476	chr4	73081921	73082330	+	0	NA	intron (NM_032217, intron 30 of 33)	AluJb|SINE|Alu	-12366	NM_001300729	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
121177	chr19	46487071	46487230	+	0	NA	intron (NM_001205281, intron 3 of 3)	intron (NM_001205281, intron 3 of 3)	8717	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
16738	chr1	155263451	155263750	+	0	NA	intron (NM_001294338, intron 12 of 12).2	intron (NM_001294338, intron 12 of 12).2	-1240	NM_005698	10067		NM_005698	ENSG00000116521	SCAMP3	C1orf3	secretory carrier membrane protein 3	protein-coding
69610	chr14	97524771	97525130	+	0	NA	intron (NR_110166, intron 2 of 4)	intron (NR_110166, intron 2 of 4)	66134	NR_110166	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
216131	chr8	11453471	11453630	+	0	NA	intron (NM_053279, intron 1 of 2)	MIR|SINE|MIR	13203	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
148360	chr20	63853651	63854150	+	0	NA	Intergenic	Intergenic	-7598	NM_080622	140701		NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
191270	chr6	6047021	6047480	+	0	NA	Intergenic	L2|LINE|L2	-39645	NM_001278710	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
154198	chr22	31401251	31401450	+	0	NA	intron (NM_004147, intron 2 of 8)	AluSg|SINE|Alu	1746	NM_004147	4733		NM_004147	ENSG00000185721	DRG1	NEDD3|TANALS	developmentally regulated GTP binding protein 1	protein-coding
114118	chr19	11142651	11142750	+	0	NA	Intergenic	Intergenic	13082	NM_001317033								
57584	chr12	122362321	122362580	+	0	NA	intron (NM_001247997, intron 4 of 25)	AluSc5|SINE|Alu	-33092	NR_045382	100507066		NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
53786	chr12	68832601	68832800	+	0	NA	intron (NM_002392, intron 8 of 10)	AluJb|SINE|Alu	23676	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
73116	chr15	41184751	41185300	+	0	NA	intron (NM_001385036, intron 10 of 10)	intron (NM_001385036, intron 10 of 10)	45732	NM_001286441	161829		NM_152596	ENSG00000178997	EXD1	EXDL1	exonuclease 3'-5' domain containing 1	protein-coding
142231	chr20	3093301	3094600	+	0	NA	Intergenic	MIR|SINE|MIR	-9226	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
4954	chr1	23976501	23976800	+	0	NA	intron (NM_001191007, intron 2 of 5)	intron (NM_001191007, intron 2 of 5)	3677	NM_001191009	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
181752	chr5	50715021	50715550	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	47871	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
168277	chr3	141487601	141488430	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	988	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
152384	chr22	20522701	20522900	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	14753	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
48319	chr12	9021851	9022150	+	0	NA	Intergenic	AluJr|SINE|Alu	32375	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
25484	chr10	6973771	6974350	+	0	NA	Intergenic	Intergenic	194462	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
38387	chr11	44827751	44827850	+	0	NA	intron (NM_130783, intron 2 of 9)	intron (NM_130783, intron 2 of 9)	100838	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
8491	chr1	40824101	40824650	+	0	NA	intron (NM_004700, intron 9 of 13)	intron (NM_004700, intron 9 of 13)	37988	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
107208	chr18	36127871	36128030	+	0	NA	intron (NM_012319, intron 1 of 9)	intron (NM_012319, intron 1 of 9)	1390	NM_012319	25800		NM_012319	ENSG00000141424	SLC39A6	LIV-1|LIV1|ZIP6	solute carrier family 39 member 6	protein-coding
17761	chr1	159026971	159027130	+	0	NA	intron (NM_001376587, intron 6 of 11)	L1PBa|LINE|L1	17143	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
84497	chr16	30495771	30495930	+	0	NA	intron (NM_002209, intron 13 of 30)	AluJr|SINE|Alu	-8069	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
60655	chr13	42595001	42595280	+	0	NA	intron (NM_033012, intron 4 of 6)	intron (NM_033012, intron 4 of 6)	20988	NM_003701	8600		NM_003701	ENSG00000120659	TNFSF11	CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf	TNF superfamily member 11	protein-coding
64381	chr14	24145221	24145530	+	0	NA	intron (NM_002818, intron 4 of 10)	intron (NM_002818, intron 4 of 10)	1235	NM_002818	5721		NM_002818	ENSG00000100911	PSME2	PA28B|PA28beta|REGbeta	proteasome activator subunit 2	protein-coding
205535	chr7	19705701	19705900	+	0	NA	promoter-TSS (NR_036101)	promoter-TSS (NR_036101)	-364	NR_036101	100422967		NR_036101	ENSG00000265932	MIR3146	mir-3146	microRNA 3146	ncRNA
94751	chr17	30811351	30811450	+	0	NA	intron (NM_015986, intron 1 of 7)	AluSx|SINE|Alu	13292	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
71347	chr14	105465171	105465730	+	0	NA	intron (NM_001203258, intron 16 of 20)	intron (NM_001203258, intron 16 of 20)	-7495	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
85603	chr16	53537601	53538450	+	0	NA	Intergenic	L1MB4|LINE|L1	-34721	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
159894	chr3	16896071	16896480	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	11320	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
88626	chr16	85624271	85624500	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	11063	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
119814	chr19	41344671	41345480	+	0	NA	intron (NM_000660, intron 2 of 6)	intron (NM_000660, intron 2 of 6)	8847	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
177725	chr4	122234701	122234900	+	0	NA	exon (NM_015312, exon 25 of 84)	exon (NM_015312, exon 25 of 84)	64197	NM_015312	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
120922	chr19	45645221	45647050	+	0	NA	promoter-TSS (NM_001352052)	promoter-TSS (NM_001352052)	-506	NM_001352052	24139		NM_012155	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	EMAP like 2	protein-coding
2680	chr1	10543351	10543650	+	0	NA	intron (NM_004565, intron 3 of 8)	intron (NM_004565, intron 3 of 8)	68550	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
194671	chr6	33666921	33667380	+	0	NA	exon (NM_002224, exon 15 of 58)	exon (NM_002224, exon 15 of 58)	-30978	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
39098	chr11	48028801	48029330	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	48506	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
88448	chr16	84948351	84949480	+	0	NA	Intergenic	Intergenic	62620	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
27895	chr10	41881701	41882350	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	486020	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
27401	chr10	31342571	31343150	+	0	NA	intron (NM_001323675, intron 1 of 6)	intron (NM_001323675, intron 1 of 6)	21200	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
60214	chr13	40489471	40489630	+	0	NA	Intergenic	Intergenic	-8544	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
34372	chr10	132256221	132256700	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	-7352	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
213125	chr7	131336821	131337180	+	0	NA	intron (NM_001321316, intron 1 of 17)	L1MEg|LINE|L1	9124	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
5322	chr1	25237001	25237530	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-4763	NM_207170	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
174345	chr4	38694371	38694530	+	0	NA	intron (NM_016531, intron 4 of 5)	intron (NM_016531, intron 4 of 5)	-29822	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
135204	chr2	159091851	159092350	+	0	NA	TTS (NR_146421)	TTS (NR_146421)	-94735	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
91246	chr17	3957851	3957950	+	0	NA	intron (NM_174953, intron 1 of 22)	intron (NM_174953, intron 1 of 22)	6537	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
187017	chr5	139760851	139760950	+	0	NA	Intergenic	Intergenic	-14677	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
94271	chr17	28702821	28703700	+	0	NA	TTS (NM_001320755)	TTS (NM_001320755)	6844	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
231522	chr9	131424101	131424500	+	0	NA	intron (NM_013318, intron 1 of 31)	MIR3|SINE|MIR	30214	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
201288	chr6	144309751	144309850	+	0	NA	intron (NM_007124, intron 1 of 73)	L2a|LINE|L2	18063	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
174870	chr4	48733921	48734380	+	0	NA	intron (NM_015030, intron 1 of 63)	L1MC1|LINE|L1	46129	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
34901	chr11	391251	392530	+	0	NA	promoter-TSS (NM_001303029)	promoter-TSS (NM_001303029)	-706	NM_001303029	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
190679	chr5	181384171	181384530	+	0	NA	Intergenic	L1PA8|LINE|L1	17063	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
75141	chr15	64598221	64598480	+	0	NA	intron (NM_015042, intron 2 of 9)	AluSz6|SINE|Alu	104931	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
71149	chr14	105011651	105011750	+	0	NA	exon (NM_145701, exon 2 of 3)	exon (NM_145701, exon 2 of 3)	9383	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
205652	chr7	22824001	22824500	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1401	NR_168014	54543		NM_019059	ENSG00000196683	TOMM7	GMPGS|TOM7	translocase of outer mitochondrial membrane 7	protein-coding
77735	chr15	85728501	85728700	+	0	NA	intron (NM_007200, intron 29 of 36)	intron (NM_007200, intron 29 of 36)	30125	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
68907	chr14	91354851	91355900	+	0	NA	intron (NM_001080414, intron 4 of 29)	intron (NM_001080414, intron 4 of 29)	62445	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
39964	chr11	62572051	62572150	+	0	NA	intron (NM_001404, intron 2 of 9)	intron (NM_001404, intron 2 of 9)	1791	NM_001404	1937		NM_001404	ENSG00000254772	EEF1G	EF1G|GIG35	eukaryotic translation elongation factor 1 gamma	protein-coding
90469	chr17	1386851	1387230	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	13182	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
208218	chr7	65234601	65234800	+	0	NA	TTS (NR_146905)	TTS (NR_146905)	93670	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
27860	chr10	40934851	40934950	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1433145	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
223947	chr9	998221	998880	+	0	NA	Intergenic	CpG	21895	NM_021240	58524		NM_021240	ENSG00000064218	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
160770	chr3	32701551	32701850	+	0	NA	intron (NM_001256742, intron 1 of 18)	MSTA|LTR|ERVL-MaLR	6159	NM_001256742	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
172525	chr4	2289771	2289930	+	0	NA	intron (NM_020972, intron 8 of 12)	intron (NM_020972, intron 8 of 12)	-27741	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
148736	chr21	7260471	7260630	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-170087	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
38189	chr11	36375051	36375800	+	0	NA	promoter-TSS (NM_024841)	promoter-TSS (NM_024841)	-560	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
48117	chr12	7875371	7875530	+	0	NA	intron (NM_001286237, intron 1 of 9)	AluSz6|SINE|Alu	-2535	NM_001286234	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
75848	chr15	69499251	69499750	+	0	NA	Intergenic	Intergenic	46682	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
205902	chr7	25132351	25132650	+	0	NA	Intergenic	Intergenic	-7240	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
236730	chrX	78118521	78118780	+	0	NA	intron (NM_000291, intron 6 of 10)	LTR33|LTR|ERVL	14402	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
215885	chr8	7913421	7913780	+	0	NA	Intergenic	Intergenic	-12737	NM_001193630	100132396		NM_001193630	ENSG00000215356	ZNF705B	-	zinc finger protein 705B	protein-coding
69041	chr14	91859451	91859550	+	0	NA	intron (NM_001128596, intron 1 of 11)	intron (NM_001128596, intron 1 of 11)	8036	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
182119	chr5	56095451	56095550	+	0	NA	Intergenic	Intergenic	100333	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
158867	chr3	9847221	9847480	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-3291	NM_001351737	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
21242	chr1	204351051	204351350	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	8729	NM_014935	22874		NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
59622	chr13	27968251	27968780	+	0	NA	exon (NM_001265, exon 1 of 3)	exon (NM_001265, exon 1 of 3)	800	NM_001265	1045		NM_001265	ENSG00000165556	CDX2	CDX-3|CDX2/AS|CDX3	caudal type homeobox 2	protein-coding
164448	chr3	59452331	59452680	+	0	NA	Intergenic	L1MB2|LINE|L1	205992	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
53053	chr12	57626601	57626800	+	0	NA	TTS (NR_166678)	TTS (NR_166678)	-4797	NR_120450	101927583		NR_120450		LOC101927583	-	uncharacterized LOC101927583	ncRNA
36303	chr11	3836521	3837780	+	0	NA	intron (NM_001665, intron 1 of 1)	intron (NM_001665, intron 1 of 1)	3809	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
224021	chr9	2872651	2873250	+	0	NA	Intergenic	Intergenic	-28855	NM_014878	9933		NM_014878	ENSG00000080608	PUM3	HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5	pumilio RNA binding family member 3	protein-coding
212788	chr7	130140971	130142000	+	0	NA	promoter-TSS (NR_149033)	promoter-TSS (NR_149033)	-246	NR_149033	100128325		NR_149033	ENSG00000229196	LINC03008	-	long intergenic non-protein coding RNA 3008	ncRNA
111508	chr19	3987401	3988680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2577	NM_001961	1938		NM_001961	ENSG00000167658	EEF2	EEF-2|EF-2|EF2|SCA26	eukaryotic translation elongation factor 2	protein-coding
30001	chr10	73764821	73765230	+	0	NA	intron (NM_198597, intron 8 of 22)	intron (NM_198597, intron 8 of 22)	-7251	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
193290	chr6	30068371	30069630	+	0	NA	intron (NM_021959, intron 2 of 2)	intron (NM_021959, intron 2 of 2)	1802	NM_021959	6992		NM_021959	ENSG00000204619	PPP1R11	CFAP255|HCG-V|HCGV|IPP3|TCTE5|TCTEX5	protein phosphatase 1 regulatory inhibitor subunit 11	protein-coding
123197	chr19	52603371	52603730	+	0	NA	Intergenic	AluSz|SINE|Alu	6866	NR_023311	7696		NM_003438		ZNF137P	ZNF137|pHZ-30	zinc finger protein 137, pseudogene	pseudo
20793	chr1	201112901	201113250	+	0	NA	promoter-TSS (NM_000069)	promoter-TSS (NM_000069)	-649	NM_000069	779		NM_000069	ENSG00000081248	CACNA1S	CACNL1A3|CCHL1A3|CMYP18|Cav1.1|DHPRM|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP	calcium voltage-gated channel subunit alpha1 S	protein-coding
43015	chr11	73990971	73991130	+	0	NA	Intergenic	Intergenic	-7848	NM_001381944	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
207838	chr7	50340021	50340900	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	21412	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
105009	chr17	82031701	82032750	+	0	NA	intron (NM_001316307, intron 1 of 5)	CpG-11936	547	NM_001316307	5881		NM_005052	ENSG00000169750	RAC3	-	Rac family small GTPase 3	protein-coding
235007	chrX	39874401	39874680	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	36979	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
19236	chr1	172638251	172640150	+	0	NA	Intergenic	Intergenic	-19808	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
26130	chr10	13776921	13777200	+	0	NA	intron (NM_018027, intron 6 of 24)	MIRb|SINE|MIR	-69493	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
155593	chr22	38765771	38766730	+	0	NA	Intergenic	Intergenic	-10252	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
115513	chr19	15425501	15426300	+	0	NA	intron (NM_001371589, intron 9 of 12)	(AGG)n|Simple_repeat|Simple_repeat	6861	NM_001330395	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
217976	chr8	38359221	38360500	+	0	NA	intron (NM_017778, intron 1 of 9)	intron (NM_017778, intron 1 of 9)	22411	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
51509	chr12	52153751	52154350	+	0	NA	Intergenic	Intergenic	37964	NM_001081492	144501		NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
55501	chr12	104954901	104955350	+	0	NA	intron (NM_001352169, intron 1 of 11)	AluSq|SINE|Alu	3165	NM_001352170	84102		NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
168026	chr3	136894071	136894430	+	0	NA	intron (NM_001291999, intron 1 of 3)	ERVL-E-int|LTR|ERVL	32042	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
70833	chr14	103636451	103636550	+	0	NA	intron (NM_001130107, intron 1 of 15)	AluSp|SINE|Alu	7312	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
147061	chr20	53706221	53707080	+	0	NA	Intergenic	Intergenic	98296	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
54367	chr12	89733601	89733950	+	0	NA	Intergenic	Intergenic	-24409	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
180115	chr5	1289221	1290100	+	0	NA	intron (NR_149162, intron 2 of 12)	CpG	5408	NM_198253	7015		NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
60722	chr13	44237471	44237650	+	0	NA	Intergenic	Intergenic	-41360	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
228740	chr9	109918671	109919030	+	0	NA	intron (NM_147150, intron 3 of 9)	intron (NM_147150, intron 3 of 9)	-129748	NM_001004065	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
199986	chr6	127996201	127996800	+	0	NA	intron (NM_001291981, intron 19 of 32).2	AluSz6|SINE|Alu	-31365	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
143755	chr20	32377821	32378430	+	0	NA	intron (NM_015338, intron 3 of 11)	AluJb|SINE|Alu	19060	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
68336	chr14	77599901	77600100	+	0	NA	intron (NM_004863, intron 1 of 11)	intron (NM_004863, intron 1 of 11)	16637	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
141183	chr2	239290771	239291130	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-14512	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
177892	chr4	128861571	128862100	+	0	NA	exon (NM_001287440, exon 9 of 11)	exon (NM_001287440, exon 9 of 11)	49991	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
101318	chr17	66633271	66633730	+	0	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-153572	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
144235	chr20	34405021	34405930	+	0	NA	intron (NM_001257138, intron 3 of 23)	AluSq2|SINE|Alu	42202	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
185793	chr5	132418871	132419050	+	0	NA	intron (NR_161242, intron 1 of 3)	L2b|LINE|L2	8031	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
214642	chr7	150748521	150749450	+	0	NA	Intergenic	Intergenic	11637	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
119200	chr19	39438921	39439580	+	0	NA	Intergenic	AluSz|SINE|Alu	-3301	NM_001363860	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
206684	chr7	36474171	36474680	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-84068	NM_001100425	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
95997	chr17	39204371	39205530	+	0	NA	TTS (NM_000981)	TTS (NM_000981)	4627	NM_001330200	6143		NM_000981	ENSG00000108298	RPL19	L19|eL19	ribosomal protein L19	protein-coding
39328	chr11	59152351	59152650	+	0	NA	exon (NM_001374804, exon 5 of 5)	exon (NM_001374804, exon 5 of 5)	7638	NM_001369457	63901		NM_022074	ENSG00000166801	FAM111A	GCLEB|KCS2	FAM111 trypsin like peptidase A	protein-coding
105303	chr17	82523751	82524050	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	4168	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
203673	chr7	1010921	1012900	+	0	NA	intron (NR_146964, intron 1 of 4)	intron (NR_146964, intron 1 of 4)	11116	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
187230	chr5	141317401	141317600	+	0	NA	TTS (NM_005642)	TTS (NM_005642)	3284	NM_005642	6879		NM_005642	ENSG00000178913	TAF7	TAF2F|TAFII55	TATA-box binding protein associated factor 7	protein-coding
41607	chr11	66401501	66401700	+	0	NA	Intergenic	AluY|SINE|Alu	-19404	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
12110	chr1	100042271	100042430	+	0	NA	intron (NM_033055, intron 1 of 11)	intron (NM_033055, intron 1 of 11)	4255	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
9541	chr1	51508701	51509100	+	0	NA	intron (NM_001981, intron 1 of 24)	intron (NM_001981, intron 1 of 24)	10366	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
157060	chr22	42588151	42588450	+	0	NA	intron (NM_001278657, intron 7 of 8)	AluY|SINE|Alu	-6289	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
442	chr1	1118271	1118800	+	0	NA	Intergenic	Intergenic	-2446	NM_001330306	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
123222	chr19	52833271	52834230	+	0	NA	Intergenic	Intergenic	-12117	NM_001369761	7576		NM_006969	ENSG00000198538	ZNF28	KOX24	zinc finger protein 28	protein-coding
37255	chr11	14642521	14644100	+	0	NA	promoter-TSS (NM_000922)	promoter-TSS (NM_000922)	324	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
148113	chr20	63433671	63435700	+	0	NA	intron (NM_001382235, intron 7 of 16)	L1MB5|LINE|L1	37970	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
108388	chr18	69839201	69839400	+	0	NA	intron (NM_152721, intron 7 of 7)	(CCTCC)n|Simple_repeat|Simple_repeat	108573	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
136613	chr2	178819651	178820250	+	0	NA	Intergenic	Intergenic	-12527	NM_001256850	7273		NM_003319	ENSG00000155657	TTN	CMD1G|CMH9|CMPD4|CMYP5|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD	titin	protein-coding
2037	chr1	7703751	7706000	+	0	NA	5' UTR (NM_001349622, exon 1 of 13)	5' UTR (NM_001349622, exon 1 of 13)	139	NM_001349615	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
67960	chr14	74851551	74852050	+	0	NA	Intergenic	AluJb|SINE|Alu	24345	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
206783	chr7	36727121	36727480	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-2751	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
165812	chr3	105822151	105822250	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	45391	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
209580	chr7	77451851	77452150	+	0	NA	Intergenic	L1MB8|LINE|L1	-35651	NM_001350896	54103		NM_017439	ENSG00000186088	GSAP	PION	gamma-secretase activating protein	protein-coding
185694	chr5	131974751	131975650	+	0	NA	intron (NM_001205250, intron 10 of 20)	intron (NM_001205250, intron 10 of 20)	-29537	NM_001303622	728637		NM_001278059	ENSG00000239642	MEIKIN	SPO13	meiotic kinetochore factor	protein-coding
119081	chr19	39212351	39212750	+	0	NA	Intergenic	MIR|SINE|MIR	-8287	NM_001080468	342898		NM_001080468	ENSG00000179751	SYCN	INSSA1|SYL	syncollin	protein-coding
3638	chr1	16386471	16387080	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	19533	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
226662	chr9	75002101	75002750	+	0	NA	intron (NM_152420, intron 3 of 7)	MER33|DNA|hAT-Charlie	24726	NM_001320497	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
87147	chr16	69186071	69188700	+	0	NA	exon (NM_006750, exon 1 of 7)	exon (NM_006750, exon 1 of 7)	238	NM_006750	6645		NM_006750	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin beta 2	protein-coding
134416	chr2	143034401	143034950	+	0	NA	intron (NM_001199241, intron 13 of 14)	intron (NM_001199241, intron 13 of 14)	-94744	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
192675	chr6	26232501	26233290	+	0	NA	Intergenic	Intergenic	2092	NM_005320	3007		NM_005320	ENSG00000124575	H1-3	H1.3|H1D|H1F3|H1s-2|HIST1H1D	H1.3 linker histone, cluster member	protein-coding
59275	chr13	24225271	24225830	+	0	NA	intron (NM_001166271, intron 2 of 12)	LTR2752|LTR|ERV1	28889	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
210487	chr7	100164271	100164650	+	0	NA	intron (NM_024637, intron 3 of 3)	AluSx1|SINE|Alu	4157	NM_024637	79690		NM_024637	ENSG00000197093	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
207467	chr7	44613501	44614100	+	0	NA	intron (NM_001363523, intron 1 of 23)	intron (NM_001363523, intron 1 of 23)	7173	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
175449	chr4	71266171	71266400	+	0	NA	intron (NM_001134742, intron 3 of 24)	intron (NM_001134742, intron 3 of 24)	-72735	NM_003759	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
24237	chr1	236159671	236160450	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	17521	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
181880	chr5	54517171	54518900	+	0	NA	exon (NM_001145427, exon 1 of 2)	exon (NM_001145427, exon 1 of 2)	276	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
137469	chr2	197069821	197070600	+	0	NA	intron (NR_160034, intron 16 of 28)	L1MD|LINE|L1	-127781	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
16820	chr1	155609471	155610550	+	0	NA	promoter-TSS (NR_146908)	promoter-TSS (NR_146908)	-160	NM_001350782	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
67995	chr14	74946251	74947280	+	0	NA	intron (NM_001207012, intron 4 of 5)	intron (NM_001207012, intron 4 of 5)	8999	NM_001293643	5228		NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding
136714	chr2	181169351	181169750	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	45713	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
209669	chr7	79909171	79909530	+	0	NA	Intergenic	Intergenic	-225481	NM_002069	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
139667	chr2	226906221	226906480	+	0	NA	intron (NM_001349069, intron 5 of 8)	intron (NM_001349069, intron 5 of 8)	70296	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
47418	chr12	3034251	3034350	+	0	NA	intron (NM_201441, intron 9 of 11)	intron (NM_201441, intron 9 of 11)	-43055	NM_001168320	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
120450	chr19	44552451	44552550	+	0	NA	intron (NR_027754, intron 1 of 7)	L1MD2|LINE|L1	4417	NR_027754	388550		NR_027754	ENSG00000290603	CEACAM22P	-	CEA cell adhesion molecule 22, pseudogene	pseudo
203774	chr7	1229801	1230530	+	0	NA	Intergenic	CpG	-2707	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
196128	chr6	42402121	42402800	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	49591	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
72967	chr15	40562001	40562750	+	0	NA	intron (NM_001382442, intron 2 of 3)	AluSq|SINE|Alu	2667	NM_001382436	90416		NM_052849	ENSG00000128891	CCDC32	C15orf57|CFNDS	coiled-coil domain containing 32	protein-coding
54678	chr12	93402401	93402600	+	0	NA	3' UTR (NM_199040, exon 5 of 5)	3' UTR (NM_199040, exon 5 of 5)	23922	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
188810	chr5	158676671	158676830	+	0	NA	Intergenic	Intergenic	-266977	NR_109888	101927697		NR_109888	ENSG00000276778	LINC02227	-	long intergenic non-protein coding RNA 2227	ncRNA
170529	chr3	186597001	186597200	+	0	NA	Intergenic	Intergenic	-15960	NM_001354573	197		NM_001622	ENSG00000145192	AHSG	A2HS|AHS|APMR1|FETUA|HSGA	alpha 2-HS glycoprotein	protein-coding
187384	chr5	141874571	141875180	+	0	NA	intron (NM_032420, intron 1 of 4)	intron (NM_032420, intron 1 of 4)	3535	NM_032420	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
151635	chr22	16561171	16561430	+	0	NA	Intergenic	(CAAGCCAGC)n|Simple_repeat|Simple_repeat	31510	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
158438	chr22	50602721	50602980	+	0	NA	intron (NM_012324, intron 2 of 11)	L2a|LINE|L2	2057	NM_012324	23542		NM_012324	ENSG00000008735	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
172847	chr4	3246951	3247450	+	0	NA	intron (NM_001330620, intron 3 of 5)	intron (NM_001330620, intron 3 of 5)	-1959	NM_001042690	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
28807	chr10	62230351	62230650	+	0	NA	intron (NM_145307, intron 6 of 11)	intron (NM_145307, intron 6 of 11)	38344	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
81425	chr16	8832771	8833030	+	0	NA	intron (NM_000303, intron 7 of 7)	intron (NM_000303, intron 7 of 7)	-16569	NR_147908	100130283		NR_147908	ENSG00000140650	LOC100130283	-	uncharacterized LOC100130283	ncRNA
156824	chr22	41936901	41937130	+	0	NA	Intergenic	Intergenic	3204	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
99497	chr17	50194021	50194530	+	0	NA	intron (NM_000088, intron 23 of 50)	intron (NM_000088, intron 23 of 50)	7356	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
51065	chr12	49841701	49843880	+	0	NA	intron (NM_181708, intron 1 of 1)	intron (NM_181708, intron 1 of 1)	316	NM_181708	144233		NM_181708	ENSG00000186666	BCDIN3D	-	BCDIN3 domain containing RNA methyltransferase	protein-coding
110775	chr19	2424621	2425600	+	0	NA	TTS (NM_012458)	TTS (NM_012458)	2476	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
207225	chr7	43677671	43678030	+	0	NA	intron (NM_001321199, intron 1 of 6)	intron (NM_001321199, intron 1 of 6)	51673	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
9991	chr1	55127571	55128650	+	0	NA	intron (NM_015306, intron 32 of 67)	intron (NM_015306, intron 32 of 67)	87254	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
911	chr1	1694071	1694450	+	0	NA	Intergenic	AluSx|SINE|Alu	-1465	NM_001110781	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
1709	chr1	5388701	5389950	+	0	NA	Intergenic	Intergenic	473416	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
151056	chr21	44706201	44706880	+	0	NA	intron (NM_001272037, intron 1 of 12)	intron (NM_001272037, intron 1 of 12)	5032	NM_144991	54084		NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|ECTD14|STHAG10|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding
155173	chr22	37742771	37743400	+	0	NA	intron (NM_001039141, intron 11 of 23)	MIRc|SINE|MIR	2859	NR_160697	102724378		NR_160696		LOC102724378	-	uncharacterized LOC102724378	ncRNA
93777	chr17	20254001	20254400	+	0	NA	intron (NM_001033555, intron 8 of 12)	intron (NM_001033555, intron 8 of 12)	-66974	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
36863	chr11	10450171	10451530	+	0	NA	5' UTR (NM_000480, exon 1 of 15)	5' UTR (NM_000480, exon 1 of 15)	159	NM_000480	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
81373	chr16	4957701	4959030	+	0	NA	promoter-TSS (NM_014692)	promoter-TSS (NM_014692)	35	NM_014692	9717		NM_014692	ENSG00000103184	SEC14L5	PRELID4B	SEC14 like lipid binding 5	protein-coding
193392	chr6	30395571	30396030	+	0	NA	Intergenic	Intergenic	50644	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
109512	chr19	839401	840000	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-1299	NM_002777	5657		NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
89751	chr16	89445571	89445730	+	0	NA	intron (NR_110931, intron 2 of 2)	intron (NR_110931, intron 2 of 2)	14732	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
51090	chr12	49968601	49968800	+	0	NA	Intergenic	Intergenic	-4247	NM_001652	363		NM_001652	ENSG00000086159	AQP6	AQP2L|KID	aquaporin 6	protein-coding
163626	chr3	52051601	52052250	+	0	NA	intron (NM_001947, intron 2 of 2)	intron (NM_001947, intron 2 of 2)	4646	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
73356	chr15	42270021	42270580	+	0	NA	intron (NM_001286487, intron 1 of 18)	AluSz|SINE|Alu	3133	NM_015497	25963		NM_015497	ENSG00000103978	TMEM87A	ELKIN1	transmembrane protein 87A	protein-coding
72836	chr15	40133321	40134330	+	0	NA	Intergenic	Intergenic	-24946	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
42537	chr11	71579951	71580250	+	0	NA	Intergenic	AluJr4|SINE|Alu	2775	NM_001005405	440051		NM_001005405	ENSG00000204571	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
229701	chr9	124766921	124767430	+	0	NA	intron (NM_001278546, intron 1 of 9)	intron (NM_001278546, intron 1 of 9)	4136	NM_033334	2649		NM_001489	ENSG00000148200	NR6A1	CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR	nuclear receptor subfamily 6 group A member 1	protein-coding
232641	chr9	136470151	136470450	+	0	NA	intron (NM_014866, intron 4 of 31)	intron (NM_014866, intron 4 of 31)	-12710	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
219754	chr8	81083101	81083300	+	0	NA	intron (NM_018440, intron 1 of 8)	L1MDa|LINE|L1	28868	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
227868	chr9	93669171	93669330	+	0	NA	intron (NM_005392, intron 17 of 21)	intron (NM_005392, intron 17 of 21)	74409	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
25658	chr10	8338501	8338900	+	0	NA	Intergenic	MIR3|SINE|MIR	-70395	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
92981	chr17	17128401	17128600	+	0	NA	intron (NM_015134, intron 4 of 22)	intron (NM_015134, intron 4 of 22)	77833	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
22796	chr1	224456621	224456880	+	0	NA	intron (NM_001322302, intron 2 of 6)	intron (NM_001322302, intron 2 of 6)	21901	NR_136293	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
230997	chr9	129500371	129500880	+	0	NA	intron (NR_038955, intron 2 of 4)	intron (NR_038955, intron 2 of 4)	11965	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
126519	chr2	28434421	28434880	+	0	NA	Intergenic	Intergenic	-39978	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
100999	chr17	64648801	64649730	+	0	NA	intron (NM_022739, intron 1 of 18)	intron (NM_022739, intron 1 of 18)	13042	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
131938	chr2	99143851	99143950	+	0	NA	intron (NM_144706, intron 2 of 3)	intron (NM_144706, intron 2 of 3)	2193	NM_001317992	150590		NM_144706	ENSG00000273045	C2orf15	-	chromosome 2 open reading frame 15	protein-coding
154986	chr22	37300171	37302200	+	0	NA	intron (NM_001318024, intron 7 of 12)	intron (NM_001318024, intron 7 of 12)	18677	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
208379	chr7	66658251	66658550	+	0	NA	intron (NM_001367722, intron 1 of 7)	AluSq2|SINE|Alu	3833	NM_001367727	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
13183	chr1	112504551	112504650	+	0	NA	intron (NM_004185, intron 2 of 5)	intron (NM_004185, intron 2 of 5)	-4365	NM_024494	7482		NM_004185	ENSG00000134245	WNT2B	WNT13	Wnt family member 2B	protein-coding
123577	chr19	54456351	54456530	+	0	NA	exon (NM_052925, exon 10 of 16)	exon (NM_052925, exon 10 of 16)	6783	NM_001375640	114823		NM_052925	ENSG00000167615	LENG8	pp13842	leukocyte receptor cluster member 8	protein-coding
138377	chr2	204005971	204006530	+	0	NA	Intergenic	Intergenic	69487	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
118241	chr19	35216821	35217280	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	11675	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
75762	chr15	68554071	68554330	+	0	NA	intron (NM_001324014, intron 2 of 12)	intron (NM_001324014, intron 2 of 12)	-24793	NM_006091	10391		NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding
200149	chr6	130364851	130365700	+	0	NA	promoter-TSS (NM_001258277)	promoter-TSS (NM_001258277)	593	NM_001258275	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
130147	chr2	74896921	74897000	+	0	NA	Intergenic	tRNA-Glu-GAG_|tRNA|tRNA	-12171	NR_125792	102724515		NR_125792	ENSG00000204792	LINC01291	LINC01293	long intergenic non-protein coding RNA 1291	ncRNA
86946	chr16	68113321	68113750	+	0	NA	intron (NM_173165, intron 1 of 9)	L1PA10|LINE|L1	28165	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
170974	chr3	194548651	194549150	+	0	NA	Intergenic	Intergenic	-35368	NR_047573	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
56694	chr12	120048051	120048750	+	0	NA	intron (NR_147894, intron 3 of 8)	intron (NR_147894, intron 3 of 8)	58556	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
225	chr1	843001	843200	+	0	NA	non-coding (NR_047526, exon 3 of 3)	non-coding (NR_047526, exon 3 of 3)	15302	NR_047525	643837		NR_015368	ENSG00000228794	LINC01128	-	long intergenic non-protein coding RNA 1128	ncRNA
219903	chr8	85827971	85828130	+	0	NA	promoter-TSS (NR_003594).10	promoter-TSS (NR_003594).10	-108	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
77008	chr15	78461321	78461850	+	0	NA	intron (NM_001320942, intron 2 of 21)	intron (NM_001320942, intron 2 of 21)	23164	NM_001320942	3658		NM_004136	ENSG00000136381	IREB2	ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA	iron responsive element binding protein 2	protein-coding
37133	chr11	13343801	13344830	+	0	NA	intron (NM_001351821, intron 3 of 19)	MER91B|DNA|hAT-Tip100	66525	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
48159	chr12	7933001	7933900	+	0	NA	intron (NM_006931, intron 2 of 9)	intron (NM_006931, intron 2 of 9)	2737	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
13728	chr1	116804501	116804980	+	0	NA	Intergenic	LTR79|LTR|ERVL	50310	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
140512	chr2	233210751	233211350	+	0	NA	Intergenic	Intergenic	-40521	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
200092	chr6	130185801	130186000	+	0	NA	intron (NM_001258275, intron 7 of 13)	AluJb|SINE|Alu	29985	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
185871	chr5	132656001	132657180	+	0	NA	promoter-TSS (NM_001354993)	promoter-TSS (NM_001354993)	68	NM_001354993	3596		NM_002188	ENSG00000169194	IL13	IL-13|P600	interleukin 13	protein-coding
176698	chr4	101019501	101020530	+	0	NA	Intergenic	Intergenic	220857	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
117546	chr19	21020291	21021750	+	0	NA	intron (NM_025189, intron 1 of 4)	intron (NM_025189, intron 1 of 4)	363	NM_025189	80264		NM_025189	ENSG00000118620	ZNF430	-	zinc finger protein 430	protein-coding
149999	chr21	36989521	36990600	+	0	NA	intron (NR_148020, intron 1 of 10)	CpG	151	NR_148020	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
219653	chr8	80482371	80483150	+	0	NA	Intergenic	Intergenic	-2833	NM_001277145	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
27300	chr10	30436771	30437880	+	0	NA	5' UTR (NM_005204, exon 2 of 9)	5' UTR (NM_005204, exon 2 of 9)	2679	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
121742	chr19	47741971	47742130	+	0	NA	3' UTR (NM_014601, exon 6 of 6)	3' UTR (NM_014601, exon 6 of 6)	-3496	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
92792	chr17	15957271	15957630	+	0	NA	intron (NM_000676, intron 1 of 1)	intron (NM_000676, intron 1 of 1)	12533	NM_000676	136		NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
239328	chrY	18445901	18446130	+	0	NA	Intergenic	Intergenic	-40969	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
80524	chr16	2762121	2762700	+	0	NA	exon (NM_016333, exon 11 of 15)	exon (NM_016333, exon 11 of 15)	9772	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
61312	chr13	50319911	50320530	+	0	NA	intron (NR_109974, intron 2 of 6)	MLT1B|LTR|ERVL-MaLR	148202	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
10579	chr1	67338721	67338980	+	0	NA	intron (NM_001374259, intron 9 of 16)	intron (NM_001374259, intron 9 of 16)	30977	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
202145	chr6	155153301	155153700	+	0	NA	intron (NM_001384547, intron 6 of 25)	intron (NM_001384547, intron 6 of 25)	46513	NM_001384547	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
227437	chr9	90102251	90102900	+	0	NA	Intergenic	Intergenic	-61076	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
101279	chr17	66386901	66387100	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	29854	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
231277	chr9	130019951	130020450	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	22989	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
211341	chr7	104943301	104943900	+	0	NA	Intergenic	Intergenic	-16955	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
79385	chr16	656671	656830	+	0	NA	exon (NM_145294, exon 19 of 41)	exon (NM_145294, exon 19 of 41)	7385	NM_145294	197335		NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19|POC16	WD repeat domain 90	protein-coding
170038	chr3	181727551	181727650	+	0	NA	intron (NR_075091, intron 7 of 7)	intron (NR_075091, intron 7 of 7)	15675	NM_003106	6657		NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box transcription factor 2	protein-coding
41878	chr11	67242971	67243130	+	0	NA	exon (NM_001256405, exon 2 of 10)	exon (NM_001256405, exon 2 of 10)	3036	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
206632	chr7	35975901	35976250	+	0	NA	Intergenic	Intergenic	-119235	NR_108089	101928618		NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
149124	chr21	17644271	17644430	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-31449	NM_001130914	10950		NM_006806	ENSG00000154640	BTG3	ANA|ANA/BTG3|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding
176666	chr4	100101001	100101480	+	0	NA	Intergenic	Intergenic	-88793	NR_125924	101929353		NR_125924	ENSG00000249710	DDIT4L-AS1	-	DDIT4L antisense RNA 1	ncRNA
133406	chr2	118845201	118845600	+	0	NA	intron (NM_001426, intron 1 of 1)	CpG	2248	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
122008	chr19	48593471	48593830	+	0	NA	intron (NM_177973, intron 5 of 6)	AluSp|SINE|Alu	-13092	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
4635	chr1	22120771	22121900	+	0	NA	exon (NM_030761, exon 4 of 5)	exon (NM_030761, exon 4 of 5)	21762	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
18530	chr1	161962021	161962680	+	0	NA	3' UTR (NM_007348, exon 16 of 16)	3' UTR (NM_007348, exon 16 of 16)	62115	NM_001347700	25903		NM_015441	ENSG00000162745	OLFML2B	-	olfactomedin like 2B	protein-coding
35464	chr11	1467621	1467880	+	0	NA	Intergenic	Intergenic	13136	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
28367	chr10	47230521	47230780	+	0	NA	Intergenic	L2b|LINE|L2	-69547	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
229639	chr9	124210501	124210900	+	0	NA	Intergenic	L1MC2|LINE|L1	-46906	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
96600	chr17	40537551	40537850	+	0	NA	Intergenic	L2b|LINE|L2	22694	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
180054	chr5	1078751	1079250	+	0	NA	intron (NM_006598, intron 10 of 23).2	intron (NM_006598, intron 10 of 23).2	-16026	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
39016	chr11	47743821	47744280	+	0	NA	exon (NM_001318339, exon 8 of 17)	exon (NM_001318339, exon 8 of 17)	23291	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
45179	chr11	117279721	117280380	+	0	NA	intron (NM_207343, intron 7 of 14)	intron (NM_207343, intron 7 of 14)	-11296	NR_037803	100379571		NR_037803		BACE1-AS	BACE1-AS1|BACE1AS|NCRNA00177	BACE1 antisense RNA	ncRNA
41171	chr11	65618721	65618980	+	0	NA	exon (NM_032223, exon 6 of 35)	exon (NM_032223, exon 6 of 35)	2538	NM_032223	399909		NM_032223	ENSG00000197136	PCNX3	PCNXL3	pecanex 3	protein-coding
1310	chr1	2400001	2400200	+	0	NA	intron (NM_007033, intron 4 of 6)	intron (NM_007033, intron 4 of 6)	8259	NM_007033	11079		NM_007033	ENSG00000157916	RER1	-	retention in endoplasmic reticulum sorting receptor 1	protein-coding
153152	chr22	23775271	23775630	+	0	NA	intron (NR_133013, intron 1 of 7).2	intron (NR_133013, intron 1 of 7).2	2601	NR_133013	4320		NM_005940	ENSG00000099953	MMP11	SL-3|ST3|STMY3	matrix metallopeptidase 11	protein-coding
61588	chr13	72781441	72782850	+	0	NA	promoter-TSS (NR_146206)	promoter-TSS (NR_146206)	12	NR_146206	10464		NM_006346	ENSG00000083535	PIBF1	C13orf24|CEP90|JBTS33|PIBF	progesterone immunomodulatory binding factor 1	protein-coding
235750	chrX	48952301	48952630	+	0	NA	intron (NM_001136159, intron 1 of 8)	L1MB8|LINE|L1	5142	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
44146	chr11	96159221	96159600	+	0	NA	intron (NM_032427, intron 1 of 4)	AluY|SINE|Alu	-182028	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
169205	chr3	156824921	156825250	+	0	NA	Intergenic	AluYj4|SINE|Alu	-1222	NM_001004316	389170		NM_001004316	ENSG00000197980	LEKR1	-	leucine, glutamate and lysine rich 1	protein-coding
20344	chr1	197868921	197869200	+	0	NA	Intergenic	Intergenic	-33570	NM_001024594	388722		NM_001024594	ENSG00000203724	C1orf53	-	chromosome 1 open reading frame 53	protein-coding
8179	chr1	39561671	39561830	+	0	NA	exon (NM_001135653, exon 15 of 16)	exon (NM_001135653, exon 15 of 16)	-2052	NR_144356	728448		NR_003929	ENSG00000291129	PPIEL	PPIEP1	peptidylprolyl isomerase E like (pseudogene)	pseudo
34124	chr10	127990271	127990650	+	0	NA	intron (NM_001316677, intron 1 of 20)	MIR3|SINE|MIR	3180	NM_001316677	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
162433	chr3	48428201	48428400	+	0	NA	intron (NM_001130082, intron 1 of 37)	intron (NM_001130082, intron 1 of 37)	1163	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
23731	chr1	232457471	232457980	+	0	NA	intron (NM_001377488, intron 10 of 21)	intron (NM_001377488, intron 10 of 21)	172408	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
174463	chr4	39732721	39732980	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSz6|SINE|Alu	34714	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
112779	chr19	7472501	7472700	+	0	NA	TTS (NM_001130955)	TTS (NM_001130955)	16435	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
175065	chr4	54043221	54043480	+	0	NA	intron (NM_012110, intron 3 of 5)	AluY|SINE|Alu	21255	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
137045	chr2	190880051	190881100	+	0	NA	promoter-TSS (NM_001256310)	promoter-TSS (NM_001256310)	-246	NM_001256310	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
54807	chr12	94640351	94640850	+	0	NA	intron (NM_020698, intron 1 of 3)	MER113|DNA|hAT-Charlie	9957	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
73405	chr15	42736121	42737750	+	0	NA	intron (NM_138477, intron 1 of 27)	CpG	193	NM_138477	146059		NM_138477	ENSG00000140326	CDAN1	CDA1|CDAI|CDAN1A|DLT|PRO1295	codanin 1	protein-coding
73891	chr15	50622401	50622730	+	0	NA	intron (NR_149152, intron 12 of 38)	intron (NR_149152, intron 12 of 38)	64232	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
47285	chr12	1652521	1653200	+	0	NA	Intergenic	Intergenic	7520	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
28678	chr10	60708401	60709250	+	0	NA	intron (NM_001204403, intron 1 of 43)	L1MCa|LINE|L1	24703	NM_001204403	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
119302	chr19	39831751	39831850	+	0	NA	intron (NM_006484, intron 2 of 11)	intron (NM_006484, intron 2 of 11)	-1998	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
91004	chr17	2777971	2778130	+	0	NA	intron (NM_001330058, intron 1 of 24)	intron (NM_001330058, intron 1 of 24)	1292	NM_001330058	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
208073	chr7	56087301	56087950	+	0	NA	exon (NM_001258459, exon 3 of 11)	exon (NM_001258459, exon 3 of 11)	5327	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
193143	chr6	29625751	29626500	+	0	NA	intron (NM_021903, intron 1 of 17).7	MER5A1|DNA|hAT-Charlie	2103	NM_021903	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
100124	chr17	58350951	58351250	+	0	NA	intron (NR_073470, intron 2 of 4)	intron (NR_073470, intron 2 of 4)	1101	NM_003168	6827		NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H|Supt4a	SPT4 homolog, DSIF elongation factor subunit	protein-coding
64266	chr14	23299251	23300050	+	0	NA	intron (NM_001276318, intron 3 of 4)	L1MEa|LINE|L1	3209	NM_001276318	90673		NM_001276318	ENSG00000235194	PPP1R3E	-	protein phosphatase 1 regulatory subunit 3E	protein-coding
52639	chr12	56279871	56280030	+	0	NA	intron (NM_004077, intron 6 of 10)	AluSx3|SINE|Alu	12624	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
131074	chr2	88739951	88740450	+	0	NA	intron (NM_144563, intron 8 of 8)	intron (NM_144563, intron 8 of 8)	-25702	NR_015424	645784		NR_015424	ENSG00000291127	ANKRD36BP2	-	ankyrin repeat domain 36B pseudogene 2	pseudo
58237	chr12	128729751	128730050	+	0	NA	Intergenic	Intergenic	94058	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
102995	chr17	76750701	76751280	+	0	NA	intron (NR_148239, intron 7 of 12)	AluSx1|SINE|Alu	13312	NM_001242532	79157		NM_024311	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
187332	chr5	141647721	141648180	+	0	NA	intron (NM_033449, intron 8 of 19)	intron (NM_033449, intron 8 of 19)	3468	NM_033449	89848		NM_033449	ENSG00000197948	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
144828	chr20	36841301	36842300	+	0	NA	intron (NM_080627, intron 1 of 14)	AluJb|SINE|Alu	18073	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
123320	chr19	53580051	53580580	+	0	NA	TTS (NM_001253801)	TTS (NM_001253801)	23182	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
138520	chr2	207334351	207335250	+	0	NA	Intergenic	Intergenic	-65376	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA
227896	chr9	93961351	93962050	+	0	NA	Intergenic	Intergenic	5866	NR_144455	101928040		NR_144455	ENSG00000235601	BARX1-DT	BARX1-AS1	BARX1 divergent transcript	ncRNA
40221	chr11	63540721	63541400	+	0	NA	intron (NM_004585, intron 2 of 3)	intron (NM_004585, intron 2 of 3)	4252	NM_004585	5920		NM_004585	ENSG00000133321	PLAAT4	HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3	phospholipase A and acyltransferase 4	protein-coding
73198	chr15	41513861	41514500	+	0	NA	promoter-TSS (NM_002344)	promoter-TSS (NM_002344)	-353	NM_001135685	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
171294	chr3	195914371	195915500	+	0	NA	Intergenic	Intergenic	-6384	NM_001382273	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
14492	chr1	144549701	144549900	+	0	NA	Intergenic	Intergenic	2143	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
143583	chr20	31677601	31677830	+	0	NA	intron (NR_134257, intron 1 of 2)	L2b|LINE|L2	39803	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
199198	chr6	111783621	111783880	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-23833	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
234645	chrX	20118421	20118680	+	0	NA	Intergenic	Intergenic	-1643	NM_001168466	256714		NM_152780	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
78262	chr15	90836921	90837180	+	0	NA	Intergenic	AluSz|SINE|Alu	-31538	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
173274	chr4	7054021	7054280	+	0	NA	exon (NM_152293, exon 2 of 2)	exon (NM_152293, exon 2 of 2)	-7919	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
195281	chr6	36509351	36509450	+	0	NA	intron (NM_007271, intron 7 of 13)	LTR22C0|LTR|ERVK	38079	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
117579	chr19	21504051	21504680	+	0	NA	Intergenic	Intergenic	-1237	NR_144523	353088		NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
133094	chr2	112583821	112586500	+	0	NA	intron (NM_001304354, intron 1 of 3)	intron (NM_001304354, intron 1 of 3)	306	NM_001304354	84269		NM_032309	ENSG00000125611	CHCHD5	C2orf9|CHTM1|MIC14|MIX14	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding
196737	chr6	45324651	45324750	+	0	NA	intron (NM_181356, intron 2 of 12)	intron (NM_181356, intron 2 of 12)	-3617	NM_001015051	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
97089	chr17	42411751	42412350	+	0	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	11206	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
21013	chr1	202886271	202886950	+	0	NA	intron (NM_002871, intron 1 of 1)	intron (NM_002871, intron 1 of 1)	2539	NM_002871	5877		NM_002871	ENSG00000183155	RABIF	MSS4|RASGFR3|RASGRF3	RAB interacting factor	protein-coding
13830	chr1	117628771	117629900	+	0	NA	TTS (NM_017709)	TTS (NM_017709)	23287	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
176283	chr4	87102421	87102930	+	0	NA	intron (NM_001313959, intron 7 of 19)	intron (NM_001313959, intron 7 of 19)	95674	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
12350	chr1	101222021	101222280	+	0	NA	Intergenic	HAL1|LINE|L1	14378	NR_104626	101928370		NR_104626		S1PR1-DT	LISPR1	S1PR1 divergent transcript	ncRNA
236854	chrX	79362971	79363430	+	0	NA	intron (NM_001171581, intron 1 of 4)	intron (NM_001171581, intron 1 of 4)	4134	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
70945	chr14	104660771	104660930	+	0	NA	TTS (NR_135293)	TTS (NR_135293)	4708	NR_135293	101929634		NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
225104	chr9	33444851	33445150	+	0	NA	intron (NM_004925, intron 1 of 5)	intron (NM_004925, intron 1 of 5)	2593	NM_004925	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
77173	chr15	80081471	80081630	+	0	NA	intron (NM_001242912, intron 2 of 6)	MER57B2|LTR|ERV1	8989	NM_001242915	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
215151	chr7	155472671	155473000	+	0	NA	Intergenic	Intergenic	14706	NM_001427	2020		NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding
146574	chr20	50084601	50084800	+	0	NA	intron (NM_001257394, intron 1 of 2)	intron (NM_001257394, intron 1 of 2)	28450	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
176912	chr4	102807871	102808230	+	0	NA	intron (NM_003340, intron 4 of 7)	intron (NM_003340, intron 4 of 7)	17810	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
231026	chr9	129595571	129596380	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12909	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
100670	chr17	63749721	63749980	+	0	NA	intron (NM_020198, intron 12 of 12)	FRAM|SINE|Alu	-7864	NM_001165970	92335		NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk	STE20 related adaptor alpha	protein-coding
200176	chr6	130717551	130717930	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-109666	NM_001195597	100507203		NM_001195597	ENSG00000256162	SMLR1	-	small leucine rich protein 1	protein-coding
45668	chr11	119025921	119026550	+	0	NA	intron (NM_001164278, intron 8 of 11)	intron (NM_001164278, intron 8 of 11)	3245	NM_001164280	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
96479	chr17	40274871	40275350	+	0	NA	intron (NM_133264, intron 6 of 7)	AluSx|SINE|Alu	-12769	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
184778	chr5	110742401	110742600	+	0	NA	intron (NM_001303249, intron 2 of 7)	intron (NM_001303249, intron 2 of 7)	3493	NM_138773	91137		NM_138773	ENSG00000164209	SLC25A46	HMSN6B|PCH1E	solute carrier family 25 member 46	protein-coding
168522	chr3	143968821	143969430	+	0	NA	Intergenic	Intergenic	-2673	NM_001363944	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
208346	chr7	66502671	66502830	+	0	NA	Intergenic	Intergenic	9059	NR_134571	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
195000	chr6	35401301	35401500	+	0	NA	intron (NM_001171818, intron 3 of 8)	L2|LINE|L2	-50938	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
159671	chr3	15398721	15399300	+	0	NA	Intergenic	MER41B|LTR|ERV1	28534	NM_152396	131965		NM_152396	ENSG00000206562	METTL6	hMETTL6	methyltransferase 6, tRNA N3-cytidine	protein-coding
37880	chr11	33971071	33971230	+	0	NA	Intergenic	Intergenic	-79074	NM_005574	4005		NM_005574	ENSG00000135363	LMO2	LMO-2|RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
60553	chr13	41478571	41478930	+	0	NA	Intergenic	L1PA7|LINE|L1	21200	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
45377	chr11	118308821	118309580	+	0	NA	intron (NM_000733, intron 4 of 8)	MIR|SINE|MIR	4470	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
206555	chr7	35648371	35648530	+	0	NA	intron (NM_022373, intron 5 of 8)	MER63B|DNA|hAT-Blackjack	46685	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
32876	chr10	110110271	110110880	+	0	NA	intron (NM_001320594, intron 3 of 15)	MamGypLTR3|LTR|Gypsy	41405	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
180440	chr5	10548671	10549230	+	0	NA	Intergenic	Intergenic	-15120	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
28169	chr10	43666671	43666850	+	0	NA	intron (NR_038867, intron 1 of 4)	intron (NR_038867, intron 1 of 4)	-17879	NM_006973	7580		NM_006973	ENSG00000169740	ZNF32	KOX30|ZNF637|Zfp637	zinc finger protein 32	protein-coding
194894	chr6	34688671	34688830	+	0	NA	intron (NM_022758, intron 1 of 3)	AluSz|SINE|Alu	-7404	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
1732	chr1	5955871	5956230	+	0	NA	intron (NR_111987, intron 6 of 32)	intron (NR_111987, intron 6 of 32)	36375	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
78591	chr15	93046671	93046830	+	0	NA	intron (NM_001166283, intron 3 of 3)	intron (NM_001166283, intron 3 of 3)	26406	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
211847	chr7	108613201	108613480	+	0	NA	Intergenic	Intergenic	43466	NM_012328	4189		NM_012328	ENSG00000128590	DNAJB9	ERdj4|MDG-1|MDG1|MST049|MSTP049	DnaJ heat shock protein family (Hsp40) member B9	protein-coding
74045	chr15	52477851	52478150	+	0	NA	intron (NM_000259, intron 1 of 40)	L1PA5|LINE|L1	50880	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
223453	chr8	143985671	143987950	+	0	NA	promoter-TSS (NM_032789)	promoter-TSS (NM_032789)	-350	NM_001317895	84875		NM_032789	ENSG00000178685	PARP10	ARTD10	poly(ADP-ribose) polymerase family member 10	protein-coding
85505	chr16	50763001	50763550	+	0	NA	intron (NM_015247, intron 7 of 19)	L1MB7|LINE|L1	20860	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
9766	chr1	53409001	53409300	+	0	NA	Intergenic	Intergenic	30870	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
51320	chr12	51325301	51325650	+	0	NA	promoter-TSS (NM_001290007)	promoter-TSS (NM_001290007)	-807	NM_001290007	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
185520	chr5	131331851	131332350	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA4|LINE|L1	68047	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
29984	chr10	73742871	73743030	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1422	NM_004922	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
149670	chr21	33586721	33587200	+	0	NA	intron (NM_017613, intron 2 of 9)	intron (NM_017613, intron 2 of 9)	1724	NM_017613	29980		NM_017613	ENSG00000159147	DONSON	B17|C21orf60|MIMIS|MISSLA	DNA replication fork stabilization factor DONSON	protein-coding
103299	chr17	77864871	77865030	+	0	NA	Intergenic	Intergenic	19137	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
1465	chr1	2683921	2684380	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-51134	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
233297	chr9	137322871	137323730	+	0	NA	intron (NM_017820, intron 19 of 21)	CpG	-21029	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
102482	chr17	75740171	75740330	+	0	NA	intron (NM_001005619, intron 19 of 38)	intron (NM_001005619, intron 19 of 38)	15554	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
128481	chr2	58046071	58047450	+	0	NA	promoter-TSS (NM_001130481)	promoter-TSS (NM_001130481)	-46	NM_006296	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
211525	chr7	105344871	105345400	+	0	NA	intron (NM_001350742, intron 2 of 16)	intron (NM_001350742, intron 2 of 16)	43786	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
23120	chr1	226690171	226691000	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-15517	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
69884	chr14	99347171	99347330	+	0	NA	Intergenic	Intergenic	-75053	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
233122	chr9	137141301	137141500	+	0	NA	intron (NM_007327, intron 1 of 19)	intron (NM_007327, intron 1 of 19)	2246	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
225565	chr9	35917271	35917850	+	0	NA	Intergenic	Intergenic	8070	NM_001348107	158376		NM_001348107	ENSG00000235387	SPAAR	LINC00961|SPAR	small regulatory polypeptide of amino acid response	protein-coding
155720	chr22	39126701	39126900	+	0	NA	Intergenic	Intergenic	25880	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
47496	chr12	3988421	3989250	+	0	NA	Intergenic	Intergenic	-115387	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
213439	chr7	138614271	138614430	+	0	NA	intron (NM_174959, intron 10 of 11)	intron (NM_174959, intron 10 of 11)	49874	NM_001331192	136306		NM_174959	ENSG00000157703	SVOPL	SLC22B5	SVOP like	protein-coding
145721	chr20	45042701	45043230	+	0	NA	intron (NM_006282, intron 10 of 10)	L1PA11|LINE|L1	58162	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
159358	chr3	13282651	13283500	+	0	NA	5' UTR (NM_001376938, exon 1 of 16)	5' UTR (NM_001376938, exon 1 of 16)	182	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
2636	chr1	10307721	10308350	+	0	NA	3' UTR (NM_001365953, exon 21 of 21)	3' UTR (NM_001365953, exon 21 of 21)	9069	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
235882	chrX	51894201	51894500	+	0	NA	intron (NM_001005332, intron 2 of 12)	intron (NM_001005332, intron 2 of 12)	727	NM_006986	9500		NM_006986	ENSG00000179222	MAGED1	DLXIN-1|NRAGE	MAGE family member D1	protein-coding
48357	chr12	9416271	9416700	+	0	NA	Intergenic	Intergenic	-9071	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
59929	chr13	31142701	31143300	+	0	NA	intron (NM_001286503, intron 11 of 16)	intron (NM_001286503, intron 11 of 16)	18904	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
204141	chr7	2364901	2365280	+	0	NA	intron (NM_001362791, intron 6 of 18)	AluJb|SINE|Alu	10263	NM_001362791	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
46293	chr11	124872521	124873450	+	0	NA	exon (NM_022370, exon 9 of 28)	exon (NM_022370, exon 9 of 28)	-3197	NR_163409	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
121411	chr19	46978401	46979400	+	0	NA	intron (NM_004491, intron 3 of 6)	(GT)n|Simple_repeat|Simple_repeat	-40937	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
112746	chr19	7385601	7386200	+	0	NA	intron (NM_001367823, intron 10 of 28)	(TC)n|Simple_repeat|Simple_repeat	-9245	NM_001367824	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
185377	chr5	127756051	127756150	+	0	NA	intron (NM_001317938, intron 3 of 6)	AluY|SINE|Alu	52709	NM_001317938	728586		NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
64480	chr14	24298001	24298230	+	0	NA	intron (NM_138452, intron 2 of 8)	AluJr|SINE|Alu	1345	NM_138452	115817		NM_138452	ENSG00000157379	DHRS1	SDR19C1	dehydrogenase/reductase 1	protein-coding
49574	chr12	26950051	26950750	+	0	NA	intron (NM_001171888, intron 1 of 4)	AluY|SINE|Alu	11930	NM_015633	26127		NM_015633	ENSG00000111790	FGFR1OP2	HSPC123-like|WIT3.0	FGFR1 oncogene partner 2	protein-coding
93257	chr17	17973901	17974130	+	0	NA	intron (NM_001130092, intron 2 of 12)	intron (NM_001130092, intron 2 of 12)	1153	NM_001130091	83450		NM_031294	ENSG00000171962	DRC3	CFAP134|LRRC48	dynein regulatory complex subunit 3	protein-coding
178718	chr4	152781371	152781530	+	0	NA	intron (NM_001025593, intron 1 of 7)	AluSz|SINE|Alu	1496	NM_001025595	27236		NM_014447	ENSG00000164144	ARFIP1	HSU52521	ADP ribosylation factor interacting protein 1	protein-coding
113108	chr19	8294051	8295550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	13558	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
152332	chr22	20420271	20420580	+	0	NA	Intergenic	MER92-int|LTR|ERV1	17400	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
220538	chr8	100696021	100696380	+	0	NA	Intergenic	AluSz|SINE|Alu	6824	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
89271	chr16	88678171	88678730	+	0	NA	exon (NM_178310, exon 3 of 3)	exon (NM_178310, exon 3 of 3)	8057	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
55737	chr12	108330801	108331000	+	0	NA	intron (NM_004072, intron 1 of 2)	intron (NM_004072, intron 1 of 2)	8411	NM_001142343	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
121597	chr19	47383371	47384100	+	0	NA	Intergenic	L1M5|LINE|L1	34420	NM_014681	9704		NM_014681	ENSG00000134815	DHX34	DDX34|HRH1	DExH-box helicase 34	protein-coding
199166	chr6	111745051	111745500	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	13856	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
225472	chr9	35607571	35607800	+	0	NA	promoter-TSS (NR_039813)	promoter-TSS (NR_039813)	-409	NR_039813	100616214		NR_039813	ENSG00000263892	MIR4667	mir-4667	microRNA 4667	ncRNA
154578	chr22	36269201	36270000	+	0	NA	Intergenic	L1P3|LINE|L1	16467	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
122464	chr19	49527671	49528630	+	0	NA	intron (NM_020650, intron 1 of 6)	intron (NM_020650, intron 1 of 6)	147	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
141963	chr20	1313051	1313750	+	0	NA	exon (NM_015685, exon 1 of 5)	exon (NM_015685, exon 1 of 5)	273	NM_015685	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
104991	chr17	82012521	82012780	+	0	NA	intron (NR_045351, intron 11 of 14)	intron (NR_045351, intron 11 of 14)	10228	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
17142	chr1	156188371	156188730	+	0	NA	Intergenic	AluSp|SINE|Alu	-5554	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
62202	chr13	98444021	98444650	+	0	NA	TTS (NM_001032296)	TTS (NM_001032296)	77790	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
16005	chr1	152003821	152004480	+	0	NA	Intergenic	Intergenic	-10291	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
165031	chr3	71414301	71414700	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-109729	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
191372	chr6	7315201	7315630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2216	NM_001292008	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
148262	chr20	63678771	63678930	+	0	NA	intron (NM_032957, intron 12 of 34)	intron (NM_032957, intron 12 of 34)	-17802	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
138871	chr2	216866501	216866700	+	0	NA	intron (NR_135525, intron 1 of 1)	intron (NR_135525, intron 1 of 1)	1209	NR_135525	105373876		NR_135525	ENSG00000237479	LOC105373876	-	uncharacterized LOC105373876	ncRNA
171788	chr4	339921	340430	+	0	NA	intron (NM_001348277, intron 1 of 1)	LTR70|LTR|ERV1	2361	NM_001348277	7700		NM_003441	ENSG00000131127	ZNF141	D4S90|pHZ-44	zinc finger protein 141	protein-coding
101246	chr17	66286001	66286400	+	0	NA	Intergenic	AluSc|SINE|Alu	-16413	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
165304	chr3	84961671	84961830	+	0	NA	intron (NM_001381964, intron 2 of 10)	intron (NM_001381964, intron 2 of 10)	2761	NM_001375961	253559		NM_153184	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|SynCAM-2|synCAM2	cell adhesion molecule 2	protein-coding
118823	chr19	38561471	38561730	+	0	NA	intron (NM_000540, intron 90 of 105)	CpG	-34747	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
5623	chr1	26163001	26163200	+	0	NA	3' UTR (NM_024869, exon 2 of 2)	3' UTR (NM_024869, exon 2 of 2)	4021	NM_024869	79927		NM_024869	ENSG00000197245	FAM110D	GRRP1	family with sequence similarity 110 member D	protein-coding
227525	chr9	91422221	91422580	+	0	NA	intron (NM_001290000, intron 1 of 1)	intron (NM_001290000, intron 1 of 1)	1432	NM_005384	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
230946	chr9	129417351	129417880	+	0	NA	Intergenic	MIR3|SINE|MIR	-71045	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
114322	chr19	12034951	12035980	+	0	NA	intron (NM_001308357, intron 1 of 4)	CpG	276	NM_001308351	163059		NM_152602	ENSG00000197647	ZNF433	-	zinc finger protein 433	protein-coding
147490	chr20	59157901	59158580	+	0	NA	intron (NM_001384354, intron 2 of 7)	intron (NM_001384354, intron 2 of 7)	-5581	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
14965	chr1	147949301	147949500	+	0	NA	intron (NM_016334, intron 5 of 13)	SVA_D|Retroposon|SVA	20980	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
2030	chr1	7681871	7682030	+	0	NA	intron (NM_001349613, intron 1 of 11)	intron (NM_001349613, intron 1 of 11)	1862	NM_001349613	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
7592	chr1	35189651	35190250	+	0	NA	intron (NR_136702, intron 4 of 11)	AluSq|SINE|Alu	3195	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
157760	chr22	46685721	46685980	+	0	NA	3' UTR (NM_022766, exon 13 of 13)	3' UTR (NM_022766, exon 13 of 13)	52402	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
129983	chr2	74004771	74004930	+	0	NA	intron (NM_001366022, intron 2 of 10)	intron (NM_001366022, intron 2 of 10)	2158	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
41677	chr11	66616021	66618200	+	0	NA	intron (NM_001198846, intron 1 of 1)	CpG	480	NM_006328	10432		NM_006328	ENSG00000239306	RBM14	COAA|PSP2|SIP|SYTIP1|TMEM137	RNA binding motif protein 14	protein-coding
53026	chr12	57590701	57591950	+	0	NA	exon (NM_024779, exon 1 of 10)	exon (NM_024779, exon 1 of 10)	133	NM_001146258	79837		NM_024779	ENSG00000166908	PIP4K2C	PIP5K2C	phosphatidylinositol-5-phosphate 4-kinase type 2 gamma	protein-coding
35297	chr11	991701	991900	+	0	NA	intron (NR_144509, intron 10 of 20)	intron (NR_144509, intron 10 of 20)	44918	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
83466	chr16	27365251	27365350	+	0	NA	TTS (NM_001257407)	TTS (NM_001257407)	-36874	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
129212	chr2	68225121	68225880	+	0	NA	intron (NM_000945, intron 1 of 5)	MLT1E3|LTR|ERVL-MaLR	27032	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
176859	chr4	102610571	102610730	+	0	NA	exon (NM_003998, exon 20 of 24)	exon (NM_003998, exon 20 of 24)	-108164	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
201406	chr6	145904571	145905080	+	0	NA	intron (NM_001370328, intron 27 of 31)	intron (NM_001370328, intron 27 of 31)	59272	NM_173082	257218		NM_173082	ENSG00000146414	SHPRH	RAD5|bA545I5.2	SNF2 histone linker PHD RING helicase	protein-coding
97955	chr17	45233871	45234100	+	0	NA	intron (NM_005892, intron 5 of 26)	intron (NM_005892, intron 5 of 26)	12100	NM_005892	752		NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin like 1	protein-coding
9104	chr1	45301151	45301250	+	0	NA	Intergenic	Intergenic	-2710	NR_024270	400752		NR_024270	ENSG00000281912	LINC01144	-	long intergenic non-protein coding RNA 1144	ncRNA
14990	chr1	148073451	148073550	+	0	NA	intron (NR_146087, intron 1 of 7)	L1PA15|LINE|L1	24198	NR_146087	728920		NR_146087		PDE4DIPP1	PDE4DIP1	PDE4DIP pseudogene 1	pseudo
184495	chr5	100861301	100861500	+	0	NA	intron (NM_005668, intron 3 of 4)	intron (NM_005668, intron 3 of 4)	41882	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
185093	chr5	119074571	119074730	+	0	NA	intron (NM_001290321, intron 1 of 43)	intron (NM_001290321, intron 1 of 43)	3563	NM_001290322	1657		NM_005509	ENSG00000172869	DMXL1	-	Dmx like 1	protein-coding
149808	chr21	34993521	34993780	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	45776	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
58551	chr12	132286171	132286530	+	0	NA	exon (NM_001122636, exon 2 of 11)	exon (NM_001122636, exon 2 of 11)	10959	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
3679	chr1	16498721	16500000	+	0	NA	Intergenic	CpG	-6659	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
190374	chr5	179750521	179751330	+	0	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	18103	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
55620	chr12	106988301	106988500	+	0	NA	Intergenic	Intergenic	-1234	NM_025198	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
112542	chr19	6532101	6532270	+	0	NA	intron (NM_003811, intron 1 of 2)	intron (NM_003811, intron 1 of 2)	1159	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
143055	chr20	21421821	21421900	+	0	NA	Intergenic	(TCCCCT)n|Simple_repeat|Simple_repeat	-24334	NM_033176	644524		NM_033176	ENSG00000125816	NKX2-4	NKX2.4|NKX2D	NK2 homeobox 4	protein-coding
103277	chr17	77778821	77779280	+	0	NA	Intergenic	Intergenic	-50491	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
233279	chr9	137307251	137308780	+	0	NA	intron (NM_017820, intron 20 of 21)	intron (NM_017820, intron 20 of 21)	-5744	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
228040	chr9	96008351	96009020	+	0	NA	intron (NM_001375291, intron 18 of 18)	intron (NM_001375291, intron 18 of 18)	13126	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
147761	chr20	62476221	62476730	+	0	NA	promoter-TSS (NM_080473)	promoter-TSS (NM_080473)	-480	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
65435	chr14	51243821	51244280	+	0	NA	intron (NM_030755, intron 2 of 7)	intron (NM_030755, intron 2 of 7)	3803	NM_030755	81542		NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
39193	chr11	57476051	57477600	+	0	NA	exon (NM_178570, exon 3 of 3)	exon (NM_178570, exon 3 of 3)	16297	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
106219	chr18	11828801	11829200	+	0	NA	intron (NM_182978, intron 5 of 11)	intron (NM_182978, intron 5 of 11)	-22413	NM_020412	57132		NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
236217	chrX	65699471	65700280	+	0	NA	intron (NM_002444, intron 1 of 12)	MIRc|SINE|MIR	32221	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
157491	chr22	45320521	45321180	+	0	NA	intron (NM_001349913, intron 1 of 8)	L1ME4c|LINE|L1	2407	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
117411	chr19	19625671	19626680	+	0	NA	intron (NM_004720, intron 2 of 2)	AluSp|SINE|Alu	2045	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
28877	chr10	62734851	62735150	+	0	NA	Intergenic	Intergenic	-69720	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
10065	chr1	58752301	58752750	+	0	NA	Intergenic	AluSx|SINE|Alu	31522	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
105631	chr18	814551	815000	+	0	NA	Intergenic	Intergenic	-2533	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
54608	chr12	92554701	92555330	+	0	NA	Intergenic	Intergenic	88336	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
65957	chr14	56115371	56115630	+	0	NA	Intergenic	7SK|RNA|RNA	-2911	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
169182	chr3	156690721	156690980	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	14186	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
198144	chr6	90479101	90479800	+	0	NA	Intergenic	Intergenic	107622	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
203074	chr6	166308001	166308200	+	0	NA	exon (NM_175922, exon 1 of 1)	exon (NM_175922, exon 1 of 1)	292	NM_175922	285800		NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
117597	chr19	21850151	21850250	+	0	NA	intron (NM_001256650, intron 1 of 5)	BSR/Beta|Satellite|Satellite	1865	NM_001256651	7594		NM_003423	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
157517	chr22	45341371	45342330	+	0	NA	non-coding (NR_146323, exon 12 of 12)	non-coding (NR_146323, exon 12 of 12)	23407	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
136014	chr2	172434701	172435700	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	7614	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
234308	chrX	13719071	13719630	+	0	NA	intron (NM_001128835, intron 3 of 5)	intron (NM_001128835, intron 3 of 5)	15270	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
164225	chr3	56927971	56928200	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	-11649	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
100808	chr17	64059301	64059500	+	0	NA	intron (NM_001433, intron 11 of 21)	intron (NM_001433, intron 11 of 21)	-38766	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
239263	chrY	13455701	13455900	+	0	NA	intron (NR_047603, intron 4 of 28)	MER88|LTR|ERVL	-23377	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
10090	chr1	58895371	58895730	+	0	NA	intron (NR_034015, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	110399	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
59205	chr13	22838311	22838450	+	0	NA	Intergenic	CpG	59801	NR_033774	646201		NR_033774		BASP1P1	-	BASP1 pseudogene 1	pseudo
97437	chr17	43544901	43547600	+	0	NA	promoter-TSS (NM_001079675)	promoter-TSS (NM_001079675)	90	NM_001079675	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
173992	chr4	26311421	26311750	+	0	NA	intron (NM_001374401, intron 1 of 11)	intron (NM_001374401, intron 1 of 11)	-8161	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
130196	chr2	84481401	84482300	+	0	NA	Intergenic	Intergenic	-22570	NM_003849	8802		NM_003849	ENSG00000163541	SUCLG1	GALPHA|MTDPS9|SUCLA1	succinate-CoA ligase GDP/ADP-forming subunit alpha	protein-coding
1903	chr1	6456201	6456480	+	0	NA	intron (NM_031475, intron 10 of 12)	intron (NM_031475, intron 10 of 12)	9833	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
119781	chr19	41312871	41313230	+	0	NA	intron (NM_001346100, intron 1 of 4)	AluSz|SINE|Alu	2573	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
68624	chr14	89680671	89682130	+	0	NA	Intergenic	Intergenic	-62235	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
13144	chr1	111686201	111686750	+	0	NA	intron (NM_001370217, intron 1 of 7)	AluJb|SINE|Alu	21681	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
206083	chr7	27185171	27185650	+	0	NA	promoter-TSS (NR_002795)	promoter-TSS (NR_002795)	2	NR_002795	221883		NR_002795	ENSG00000240990	HOXA11-AS	HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|LncHOXA11|NCRNA00076	HOXA11 antisense RNA	ncRNA
41368	chr11	65978351	65978800	+	0	NA	intron (NM_005146, intron 17 of 19)	intron (NM_005146, intron 17 of 19)	16841	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
144104	chr20	33837521	33837780	+	0	NA	intron (NM_176812, intron 1 of 4)	intron (NM_176812, intron 1 of 4)	26302	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
230690	chr9	128730251	128730750	+	0	NA	3' UTR (NM_001375959, exon 15 of 15)	3' UTR (NM_001375959, exon 15 of 15)	6038	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
156108	chr22	40086701	40086900	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	41983	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
236030	chrX	55303251	55303350	+	0	NA	Intergenic	L1PA5|LINE|L1	23212	NR_130179	100421746		NR_130179	ENSG00000290748	LOC100421746	-	PAGE family member 5 pseudogene	pseudo
162843	chr3	49296901	49297100	+	0	NA	intron (NM_199443, intron 12 of 20)	intron (NM_199443, intron 12 of 20)	-19768	NM_198562	375341		NM_198562	ENSG00000188315	C3orf62	MAPS	chromosome 3 open reading frame 62	protein-coding
203938	chr7	1540501	1542630	+	0	NA	TTS (NM_001097620)	TTS (NM_001097620)	-6685	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
20383	chr1	198156711	198158390	+	0	NA	intron (NM_133494, intron 1 of 9)	CpG	552	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
121579	chr19	47277901	47278500	+	0	NA	Intergenic	AluSx1|SINE|Alu	3315	NM_178511	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
78986	chr15	101697471	101698030	+	0	NA	intron (NM_152334, intron 10 of 18)	MLT1H1-int|LTR|ERVL-MaLR	26723	NM_152334	123283		NM_152334	ENSG00000185418	TARS3	TARSL2|ThrRS-L	threonyl-tRNA synthetase 3	protein-coding
82554	chr16	18561151	18561250	+	0	NA	intron (NM_173614, intron 1 of 30).2	(A)n|Simple_repeat|Simple_repeat	912	NM_173614	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
148036	chr20	63180651	63181930	+	0	NA	Intergenic	Intergenic	2790	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
229382	chr9	121122651	121123430	+	0	NA	intron (NR_163191, intron 1 of 18)	intron (NR_163191, intron 1 of 18)	1270	NM_001330762	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
214923	chr7	151517801	151518700	+	0	NA	intron (NM_005614, intron 1 of 7)	intron (NM_005614, intron 1 of 7)	1645	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
160070	chr3	18723351	18724900	+	0	NA	Intergenic	Intergenic	-278533	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
98831	chr17	48420921	48421180	+	0	NA	intron (NM_001075099, intron 1 of 12)	intron (NM_001075099, intron 1 of 12)	9164	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
234971	chrX	39335601	39335800	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-8338	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
69419	chr14	94070601	94070800	+	0	NA	intron (NM_020414, intron 2 of 8).2	L1PB1|LINE|L1	10502	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
144472	chr20	35607171	35607530	+	0	NA	intron (NR_119376, intron 1 of 42)	intron (NR_119376, intron 1 of 42)	212	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
213876	chr7	142375971	142376350	+	0	NA	Intergenic	Intergenic	-98367	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
26081	chr10	13113671	13114030	+	0	NA	intron (NM_001008212, intron 5 of 14)	AluJb|SINE|Alu	13687	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
208891	chr7	73843571	73843730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1134	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
206389	chr7	30742571	30742930	+	0	NA	Intergenic	Intergenic	-9385	NM_006774	11185		NM_006774	ENSG00000241644	INMT	TEMT	indolethylamine N-methyltransferase	protein-coding
222892	chr8	142785121	142785730	+	0	NA	exon (NM_003695, exon 3 of 3)	exon (NM_003695, exon 3 of 3)	1114	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
68977	chr14	91456271	91456930	+	0	NA	TTS (NM_001284281)	TTS (NM_001284281)	-38780	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
82042	chr16	12322171	12322330	+	0	NA	intron (NM_032167, intron 15 of 20)	intron (NM_032167, intron 15 of 20)	345516	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
136387	chr2	176125821	176126080	+	0	NA	Intergenic	Intergenic	3231	NM_014213	3235		NM_014213	ENSG00000128709	HOXD9	HOX4|HOX4C|Hox-4.3|Hox-5.2	homeobox D9	protein-coding
182336	chr5	59125571	59125830	+	0	NA	intron (NM_001364603, intron 5 of 15)	intron (NM_001364603, intron 5 of 15)	-86224	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
31946	chr10	100656151	100657050	+	0	NA	Intergenic	CpG	-78796	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
34971	chr11	499621	499880	+	0	NA	intron (NM_203389, intron 4 of 9).2	intron (NM_203389, intron 4 of 9).2	7018	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
219115	chr8	65954301	65955030	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-60313	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
25857	chr10	11239301	11239700	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	74470	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
94201	chr17	28579521	28579780	+	0	NA	intron (NM_006461, intron 17 of 23)	intron (NM_006461, intron 17 of 23)	-2755	NM_005165	230		NM_005165	ENSG00000109107	ALDOC	ALDC	aldolase, fructose-bisphosphate C	protein-coding
187717	chr5	143395601	143396730	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	7118	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
34302	chr10	131979271	131979580	+	0	NA	intron (NM_004052, intron 1 of 5)	intron (NM_004052, intron 1 of 5)	2588	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
130168	chr2	75712151	75712250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1285	NM_001201335	6936		NM_003203	ENSG00000005436	GCFC2	C2orf3|DNABF|GCF|TCF9	GC-rich sequence DNA-binding factor 2	protein-coding
27471	chr10	32041651	32041950	+	0	NA	intron (NM_004521, intron 2 of 25)	AluJo|SINE|Alu	14625	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
98138	chr17	46017751	46018050	+	0	NA	intron (NR_165166, intron 8 of 9)	AluY|SINE|Alu	18650	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
99264	chr17	49736551	49737230	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	27241	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
168726	chr3	150757621	150757950	+	0	NA	intron (NM_005067, intron 1 of 1)	FLAM_C|SINE|Alu	5384	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
51579	chr12	52617551	52617850	+	0	NA	intron (NM_175068, intron 1 of 8)	intron (NM_175068, intron 1 of 8)	859	NM_175068	319101		NM_175068	ENSG00000186049	KRT73	CK-73|IRT6IRS3|K6IRS3|K73|KRT6IRS3	keratin 73	protein-coding
55571	chr12	106246851	106248600	+	0	NA	exon (NM_006825, exon 1 of 2)	exon (NM_006825, exon 1 of 2)	295	NM_006825	10970		NM_006825	ENSG00000136026	CKAP4	CLIMP-63|CLIMP63|ERGIC-63|p63	cytoskeleton associated protein 4	protein-coding
144565	chr20	35764171	35764530	+	0	NA	Intergenic	AluSp|SINE|Alu	-7665	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
187689	chr5	143344901	143345100	+	0	NA	intron (NR_157096, intron 1 of 7)	MER6|DNA|TcMar-Tigger	58283	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
227847	chr9	93504671	93505030	+	0	NA	intron (NM_001286722, intron 5 of 17)	L1ME3D|LINE|L1	-51249	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
41924	chr11	67290571	67291030	+	0	NA	intron (NM_207354, intron 3 of 14)	intron (NM_207354, intron 3 of 14)	1497	NM_001347901	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
235707	chrX	48893321	48893780	+	0	NA	3' UTR (NM_005834, exon 7 of 7)	3' UTR (NM_005834, exon 7 of 7)	-4362	NM_001032383	10084		NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
105709	chr18	2691371	2691730	+	0	NA	intron (NM_015295, intron 7 of 47)	intron (NM_015295, intron 7 of 47)	35824	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
159945	chr3	17160801	17161200	+	0	NA	exon (NM_001349086, exon 21 of 21)	exon (NM_001349086, exon 21 of 21)	227804	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
209364	chr7	76284571	76284730	+	0	NA	intron (NM_001291831, intron 15 of 15)	intron (NM_001291831, intron 15 of 15)	-18023	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
135135	chr2	157435471	157435700	+	0	NA	intron (NM_004288, intron 1 of 7)	intron (NM_004288, intron 1 of 7)	8504	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
34748	chr11	128521	128780	+	0	NA	non-coding (NR_028326, exon 3 of 3)	non-coding (NR_028326, exon 3 of 3)	3203	NR_028326	100133161		NR_028326		LINC01001	-	long intergenic non-protein coding RNA 1001	ncRNA
30071	chr10	73872021	73872550	+	0	NA	intron (NR_160045, intron 1 of 17)	intron (NR_160045, intron 1 of 17)	2270	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
187560	chr5	142785301	142785530	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	14188	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
36425	chr11	4187101	4187880	+	0	NA	intron (NR_047550, intron 1 of 1)	CpG	338	NR_047550	100506082		NR_047550	ENSG00000254480	LINC02749	-	long intergenic non-protein coding RNA 2749	ncRNA
42251	chr11	68123671	68124030	+	0	NA	Intergenic	AluJb|SINE|Alu	-2462	NM_001376220	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
224721	chr9	21559121	21560180	+	0	NA	non-coding (NR_027054, exon 1 of 4)	non-coding (NR_027054, exon 1 of 4)	148	NR_027054	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
212088	chr7	115410171	115411100	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	170806	NR_145801	109623459		NR_145801	ENSG00000202377	SNORA25B	-	small nucleolar RNA, H/ACA box 25B	snoRNA
189487	chr5	173131701	173131900	+	0	NA	intron (NM_153607, intron 8 of 8)	AluSx1|SINE|Alu	-12731	NM_013979	662		NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2 interacting protein 1	protein-coding
36373	chr11	3959201	3959400	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	103238	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
81863	chr16	11640901	11641830	+	0	NA	Intergenic	(GACA)n|Simple_repeat|Simple_repeat	-27090	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
76215	chr15	73914071	73914450	+	0	NA	Intergenic	Intergenic	-12202	NM_005576	4016		NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase like 1	protein-coding
185399	chr5	128201051	128201680	+	0	NA	Intergenic	Intergenic	117599	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
88334	chr16	84516601	84517380	+	0	NA	Intergenic	Intergenic	-12331	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
33919	chr10	124601701	124601900	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-102228	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
43987	chr11	94147471	94147830	+	0	NA	intron (NM_015368, intron 1 of 4)	intron (NM_015368, intron 1 of 4)	18809	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
173485	chr4	9158471	9158800	+	0	NA	Intergenic	Intergenic	-14538	NM_001358418	100287045		NM_001358418	ENSG00000229924	FAM90A26	FAM90A26P	family with sequence similarity 90 member A26	protein-coding
182491	chr5	62581921	62582180	+	0	NA	TTS (NM_181506)	TTS (NM_181506)	3231	NM_181506	100130733		NM_181506	ENSG00000186105	LRRC70	SLRN	leucine rich repeat containing 70	protein-coding
90660	chr17	1684001	1685500	+	0	NA	intron (NM_006445, intron 1 of 42)	CpG	117	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
150418	chr21	42403551	42404980	+	0	NA	intron (NM_001243467, intron 1 of 11)	intron (NM_001243467, intron 1 of 11)	363	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
110498	chr19	2046841	2047600	+	0	NA	intron (NM_199054, intron 2 of 13)	MER20|DNA|hAT-Charlie	4024	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
109133	chr18	80175201	80177450	+	0	NA	intron (NR_028340, intron 2 of 2)	intron (NR_028340, intron 2 of 2)	28401	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
211437	chr7	105068351	105068450	+	0	NA	intron (NM_182931, intron 6 of 26)	L1MD1|LINE|L1	54195	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
93531	chr17	19038871	19039450	+	0	NA	intron (NM_001330148, intron 2 of 3)	MIR3|SINE|MIR	7797	NM_006613	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
180830	chr5	32531151	32533030	+	0	NA	Intergenic	Intergenic	-53467	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
144	chr1	522071	522380	+	0	NA	Intergenic	Intergenic	-26780	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
220729	chr8	102100471	102101100	+	0	NA	intron (NM_001040625, intron 1 of 6)	L1MB3|LINE|L1	23549	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
227341	chr9	89461151	89461880	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	18375	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
126471	chr2	28365071	28365500	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-27573	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
195057	chr6	35500051	35500350	+	0	NA	intron (NM_001289395, intron 12 of 13)	intron (NM_001289395, intron 12 of 13)	-3121	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
60082	chr13	34943521	34944000	+	0	NA	intron (NM_001385012, intron 1 of 58)	intron (NM_001385012, intron 1 of 58)	1490	NM_001379245	26960		NM_015678	ENSG00000172915	NBEA	BCL8B|LYST2|NEDEGE	neurobeachin	protein-coding
101122	chr17	65025721	65026230	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	29799	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
38797	chr11	47267501	47267700	+	0	NA	intron (NM_001251934, intron 7 of 9)	AluSx1|SINE|Alu	-1588	NM_001376651	8567		NM_003682	ENSG00000110514	MADD	DEEAH|DENN|IG20|NEDDISH|RAB3GEP|RabGEF	MAP kinase activating death domain	protein-coding
64791	chr14	34857751	34858330	+	0	NA	intron (NM_013448, intron 3 of 26)	L2a|LINE|L2	-16151	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
173618	chr4	11428371	11429230	+	0	NA	promoter-TSS (NM_005114)	promoter-TSS (NM_005114)	94	NM_005114	9957		NM_005114	ENSG00000002587	HS3ST1	3OST|3OST1	heparan sulfate-glucosamine 3-sulfotransferase 1	protein-coding
42771	chr11	72746921	72747330	+	0	NA	intron (NM_001040118, intron 1 of 34)	intron (NM_001040118, intron 1 of 34)	5264	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
10320	chr1	64890271	64890700	+	0	NA	intron (NM_001321852, intron 1 of 24)	MIRb|SINE|MIR	76064	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
130072	chr2	74482171	74483850	+	0	NA	promoter-TSS (NM_001376141)	promoter-TSS (NM_001376141)	-12	NM_001365575	84865		NM_032779	ENSG00000135637	CCDC142	-	coiled-coil domain containing 142	protein-coding
182760	chr5	68292421	68292700	+	0	NA	promoter-TSS (NM_001242466)	promoter-TSS (NM_001242466)	-17	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
29943	chr10	73433451	73433750	+	0	NA	promoter-TSS (NM_001024593)	promoter-TSS (NM_001024593)	-39	NM_001024593	118490		NM_178451	ENSG00000166343	MSS51	ZMYND17	MSS51 mitochondrial translational activator	protein-coding
90695	chr17	1741451	1742430	+	0	NA	promoter-TSS (NM_000934)	promoter-TSS (NM_000934)	-931	NM_000934	5345		NM_000934	ENSG00000167711	SERPINF2	A2AP|AAP|ALPHA-2-PI|API|PLI|alpha2AP	serpin family F member 2	protein-coding
150685	chr21	43660391	43661430	+	0	NA	intron (NM_015056, intron 1 of 15)	intron (NM_015056, intron 1 of 15)	1350	NM_015056	23076		NM_015056	ENSG00000160208	RRP1B	KIAA0179|NNP1L|Nnp1|PPP1R136|RRP1	ribosomal RNA processing 1B	protein-coding
170292	chr3	184325721	184326180	+	0	NA	TTS (NR_003055)	TTS (NR_003055)	254	NR_003055	692107		NR_003055	ENSG00000212158	SNORD66	HBII-142	small nucleolar RNA, C/D box 66	snoRNA
76654	chr15	75647001	75648300	+	0	NA	promoter-TSS (NM_153271)	promoter-TSS (NM_153271)	-262	NM_153271	257364		NM_153271	ENSG00000173548	SNX33	SH3PX3|SH3PXD3C|SNX30	sorting nexin 33	protein-coding
3088	chr1	12194721	12195730	+	0	NA	intron (NM_001066, intron 8 of 9)	intron (NM_001066, intron 8 of 9)	3512	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
149977	chr21	36701171	36701530	+	0	NA	intron (NM_005069, intron 1 of 10)	CpG-18381	2235	NM_009586	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
17218	chr1	156277951	156278450	+	0	NA	intron (NM_001323616, intron 3 of 22)	intron (NM_001323616, intron 3 of 22)	4625	NM_015327	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
184213	chr5	95960691	95963230	+	0	NA	promoter-TSS (NM_012081)	promoter-TSS (NM_012081)	-41	NR_130776	101929710		NR_130776	ENSG00000251314	LOC101929710	-	uncharacterized LOC101929710	ncRNA
113824	chr19	10612551	10612850	+	0	NA	intron (NM_001145056, intron 1 of 21)	intron (NM_001145056, intron 1 of 21)	10245	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
226255	chr9	67720271	67720430	+	0	NA	Intergenic	SST1|Satellite|centr	-1171	NR_103833	100131997		NR_103833	ENSG00000274026	FAM27E3	-	family with sequence similarity 27 member E3	ncRNA
62523	chr13	99526751	99526850	+	0	NA	intron (NM_004800, intron 3 of 16)	L2a|LINE|L2	25328	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
2687	chr1	10629301	10629500	+	0	NA	intron (NM_004565, intron 8 of 8)	intron (NM_004565, intron 8 of 8)	154450	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
163388	chr3	50499301	50499730	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	4119	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
83280	chr16	24033921	24034430	+	0	NA	intron (NM_212535, intron 4 of 16)	intron (NM_212535, intron 4 of 16)	-168941	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
162221	chr3	47045521	47046180	+	0	NA	intron (NR_146158, intron 17 of 21)	AluYc|SINE|Alu	34308	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
233246	chr9	137260921	137261380	+	0	NA	intron (NM_015456, intron 4 of 12)	AluYh3|SINE|Alu	5823	NM_015456	25920		NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
184982	chr5	113520601	113520800	+	0	NA	intron (NM_001345976, intron 2 of 27)	intron (NM_001345976, intron 2 of 27)	7006	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
71050	chr14	104794901	104796270	+	0	NA	5' UTR (NM_001014432, exon 1 of 15)	5' UTR (NM_001014432, exon 1 of 15)	163	NM_001382433	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
140133	chr2	231549271	231549980	+	0	NA	Intergenic	Intergenic	-19180	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
8219	chr1	39680721	39681430	+	0	NA	3' UTR (NM_001282397, exon 3 of 3)	3' UTR (NM_001282397, exon 3 of 3)	-9037	NM_032526	84618		NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
177025	chr4	107035071	107035230	+	0	NA	intron (NM_014421, intron 1 of 3)	intron (NM_014421, intron 1 of 3)	1163	NM_014421	27123		NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
85673	chr16	56355051	56355350	+	0	NA	intron (NM_020988, intron 8 of 8)	intron (NM_020988, intron 8 of 8)	69789	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
196312	chr6	43061371	43061730	+	0	NA	exon (NM_201521, exon 2 of 16)	exon (NM_201521, exon 2 of 16)	1637	NM_001289034	89953		NM_138343	ENSG00000137171	KLC4	KNSL8|bA387M24.3	kinesin light chain 4	protein-coding
53396	chr12	64697851	64698950	+	0	NA	TTS (NM_178169)	TTS (NM_178169)	61006	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
178540	chr4	151031771	151032000	+	0	NA	Intergenic	Intergenic	-16158	NM_001367550	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
64982	chr14	37969571	37969730	+	0	NA	Intergenic	Intergenic	-67526	NR_135286	400208		NR_135286	ENSG00000259091	LINC00517	C14orf26	long intergenic non-protein coding RNA 517	ncRNA
188135	chr5	150400071	150400230	+	0	NA	non-coding (NR_157074, exon 7 of 7)	non-coding (NR_157074, exon 7 of 7)	12606	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
166939	chr3	125143171	125143330	+	0	NA	intron (NM_024628, intron 5 of 13)	intron (NM_024628, intron 5 of 13)	8302	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
211896	chr7	111735721	111735980	+	0	NA	intron (NM_014705, intron 49 of 51)	intron (NM_014705, intron 49 of 51)	-72655	NR_103806	100506413		NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
182517	chr5	65172551	65172850	+	0	NA	intron (NM_197941, intron 23 of 24)	intron (NM_197941, intron 23 of 24)	309220	NR_135689	11174		NM_014273	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein-coding
42948	chr11	73600701	73600900	+	0	NA	Intergenic	AluJb|SINE|Alu	-2688	NM_015159	23201		NM_015159	ENSG00000054965	FAM168A	KIAA0280|TCRP1	family with sequence similarity 168 member A	protein-coding
208397	chr7	66692751	66692850	+	0	NA	intron (NM_001367745, intron 1 of 7)	intron (NM_001367745, intron 1 of 7)	10634	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
123599	chr19	54478151	54478980	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5269	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
138399	chr2	204871671	204871830	+	0	NA	intron (NM_205863, intron 2 of 21)	intron (NM_205863, intron 2 of 21)	326275	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
136881	chr2	189261551	189261730	+	0	NA	Intergenic	Intergenic	-81879	NM_000393	1290		NM_000393	ENSG00000204262	COL5A2	EDSC|EDSCL2	collagen type V alpha 2 chain	protein-coding
21358	chr1	204837471	204837730	+	0	NA	intron (NM_001378330, intron 1 of 15)	intron (NM_001378330, intron 1 of 15)	8948	NR_165492	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
230979	chr9	129480671	129480830	+	0	NA	Intergenic	Intergenic	-7910	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
115184	chr19	14439121	14439380	+	0	NA	intron (NM_002741, intron 1 of 21)	intron (NM_002741, intron 1 of 21)	-1027	NM_213560	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
100977	chr17	64538301	64539030	+	0	NA	TTS (NM_001316990)	TTS (NM_001316990)	31688	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
57645	chr12	122520151	122520250	+	0	NA	intron (NR_036436, intron 3 of 9)	intron (NR_036436, intron 3 of 9)	6736	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
181052	chr5	36151301	36153100	+	0	NA	promoter-TSS (NM_001007527)	promoter-TSS (NM_001007527)	89	NM_032637	6502		NM_005983	ENSG00000145604	SKP2	FBL1|FBXL1|FLB1|p45	S-phase kinase associated protein 2	protein-coding
171972	chr4	913971	915180	+	0	NA	intron (NM_005255, intron 1 of 27)	intron (NM_005255, intron 1 of 27)	17741	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
152717	chr22	21653951	21654700	+	0	NA	TTS (NR_029845)	TTS (NR_029845)	1021	NR_029845	406920		NR_029845	ENSG00000283871	MIR130B	MIRN130B|mir-130b	microRNA 130b	ncRNA
112797	chr19	7488621	7489830	+	0	NA	promoter-TSS (NM_001270539)	promoter-TSS (NM_001270539)	175	NM_001300881	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
24882	chr10	954921	955180	+	0	NA	Intergenic	Intergenic	22024	NR_120629	101927762		NR_120629	ENSG00000229869	LARP4B-DT	-	LARP4B divergent transcript	ncRNA
76333	chr15	74416051	74416150	+	0	NA	intron (NM_001146029, intron 6 of 12)	intron (NM_001146029, intron 6 of 12)	-4668	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
103026	chr17	77011171	77011500	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-42136	NR_136417	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
53158	chr12	57935501	57936950	+	0	NA	promoter-TSS (NR_038269)	promoter-TSS (NR_038269)	-61	NR_038269	100506844		NR_038269	ENSG00000257698	GIHCG	-	GIHCG inhibitor of miR-200b/200a/429 expression	ncRNA
205265	chr7	8150271	8150430	+	0	NA	intron (NM_001350838, intron 6 of 11)	intron (NM_001350838, intron 6 of 11)	111817	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
223188	chr8	143565301	143565650	+	0	NA	TTS (NM_001100878).2	TTS (NM_001100878).2	7129	NM_024736	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
70031	chr14	100100351	100101050	+	0	NA	intron (NM_016337, intron 3 of 13)	AluSc8|SINE|Alu	8814	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
80216	chr16	2164851	2165150	+	0	NA	intron (NM_032271, intron 2 of 20)	CpG	9218	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
157336	chr22	44662101	44662630	+	0	NA	Intergenic	Intergenic	-6182	NM_001017529	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
141514	chr2	241208921	241209630	+	0	NA	intron (NM_001370694, intron 11 of 24)	CpG	20598	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
927	chr1	1714721	1714980	+	0	NA	intron (NM_001313982, intron 5 of 19)	L1M4a1|LINE|L1	9507	NR_132739	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
109716	chr19	1073471	1073630	+	0	NA	exon (NM_001258328, exon 4 of 23)	exon (NM_001258328, exon 4 of 23)	2340	NM_001282335	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
211868	chr7	111024201	111024400	+	0	NA	intron (NM_032549, intron 3 of 5)	L1MEc|LINE|L1	-66706	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
52331	chr12	54981251	54981350	+	0	NA	intron (NM_001136030, intron 1 of 10)	intron (NM_001136030, intron 1 of 10)	631	NM_001098815	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
53851	chr12	69733701	69733900	+	0	NA	intron (NR_110072, intron 1 of 3)	MLT1K|LTR|ERVL-MaLR	4750	NR_159971	101928002		NR_110072	ENSG00000247131	LOC101928002	-	uncharacterized LOC101928002	ncRNA
201094	chr6	142837801	142838400	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	107076	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
75566	chr15	67054871	67055230	+	0	NA	intron (NR_135686, intron 2 of 5)	L2c|LINE|L2	9132	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
21196	chr1	203859051	203859550	+	0	NA	Intergenic	AluJb|SINE|Alu	-2299	NM_001304464	6635		NM_003094	ENSG00000182004	SNRPE	HYPT11|SME|Sm-E|snRNP-E	small nuclear ribonucleoprotein polypeptide E	protein-coding
45867	chr11	119690851	119691850	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	37850	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
6697	chr1	29175051	29176250	+	0	NA	intron (NM_005626, intron 1 of 5)	AluY|SINE|Alu	6250	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
225828	chr9	37908801	37909000	+	0	NA	Intergenic	Intergenic	-4547	NR_024872	92014		NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
22592	chr1	223140751	223141250	+	0	NA	intron (NM_003268, intron 2 of 5)	intron (NM_003268, intron 2 of 5)	2248	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
138093	chr2	202240771	202240930	+	0	NA	Intergenic	L1MB8|LINE|L1	-2253	NM_001371394	7341		NM_003352	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin like modifier 1	protein-coding
148584	chr21	5065201	5065920	+	0	NA	Intergenic	Intergenic	-36500	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
88653	chr16	85648551	85649250	+	0	NA	intron (NM_001278184, intron 2 of 14)	intron (NM_001278184, intron 2 of 14)	35578	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
120744	chr19	45396351	45397200	+	0	NA	exon (NM_006663, exon 4 of 13)	exon (NM_006663, exon 4 of 13)	8294	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
30803	chr10	84465151	84465250	+	0	NA	intron (NM_001284240, intron 7 of 9)	intron (NM_001284240, intron 7 of 9)	40031	NM_001284242	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
32366	chr10	102395201	102396800	+	0	NA	intron (NM_001288724, intron 2 of 22)	(TGCCCC)n|Simple_repeat|Simple_repeat	295	NM_001261403	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
178273	chr4	143911821	143912430	+	0	NA	promoter-TSS (NR_125886)	promoter-TSS (NR_125886)	-206	NR_125886	101927636		NR_125886	ENSG00000251600	LOC101927636	-	uncharacterized LOC101927636	ncRNA
232975	chr9	136972971	136973650	+	0	NA	TTS (NR_157392)	TTS (NR_157392)	3898	NR_157392	101928638		NM_001101674		LINC02692	C9orf141|PRR31	long intergenic non-protein coding RNA 2692	ncRNA
101297	chr17	66437421	66437850	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-20781	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
65612	chr14	52267171	52268000	+	0	NA	promoter-TSS (NM_001281469)	promoter-TSS (NM_001281469)	-113	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
231299	chr9	130046351	130047080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3526	NM_001363755	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
167141	chr3	127800571	127801000	+	0	NA	intron (NM_001003794, intron 2 of 7)	intron (NM_001003794, intron 2 of 7)	22097	NM_007283	11343		NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
23577	chr1	229514351	229515000	+	0	NA	TTS (NR_110630)	TTS (NR_110630)	6245	NR_110630	101927478		NR_110630		NUP133-DT	-	NUP133 divergent transcript	ncRNA
49436	chr12	24793251	24793350	+	0	NA	Intergenic	Intergenic	108922	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
94886	chr17	31535321	31536200	+	0	NA	TTS (NR_039877)	TTS (NR_039877)	877	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
200238	chr6	131807321	131808470	+	0	NA	promoter-TSS (NM_006208)	promoter-TSS (NM_006208)	-125	NM_006208	5167		NM_006208	ENSG00000197594	ENPP1	ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding
69843	chr14	99245571	99246100	+	0	NA	intron (NM_001282237, intron 2 of 3)	CpG	26362	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
228454	chr9	99840001	99840400	+	0	NA	intron (NM_173200, intron 6 of 8)	(CTGG)n|Simple_repeat|Simple_repeat	18315	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
166751	chr3	122076721	122077700	+	0	NA	promoter-TSS (NM_006889)	promoter-TSS (NM_006889)	-639	NM_006889	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
218401	chr8	47259001	47259400	+	0	NA	Intergenic	L2b|LINE|L2	-1678	NM_001352957	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
183156	chr5	75063101	75063700	+	0	NA	Intergenic	Intergenic	-10842	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
74931	chr15	63738871	63739030	+	0	NA	intron (NM_003922, intron 12 of 77)	intron (NM_003922, intron 12 of 77)	94998	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
170127	chr3	183287201	183287700	+	0	NA	intron (NM_015078, intron 14 of 29)	intron (NM_015078, intron 14 of 29)	34197	NM_032047	84002		NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
107486	chr18	47204971	47205150	+	0	NA	Intergenic	Intergenic	-28696	NM_016097	51124		NM_016097	ENSG00000134049	IER3IP1	HSPC039|MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
222725	chr8	141382021	141382530	+	0	NA	Intergenic	L1MB5|LINE|L1	-9746	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
140716	chr2	234421951	234422300	+	0	NA	Intergenic	Intergenic	32470	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
37705	chr11	30281671	30281830	+	0	NA	Intergenic	L1PA16|LINE|L1	-41354	NM_152316	120534		NM_152316	ENSG00000152219	ARL14EP	ARF7EP|C11orf46|dJ299F11.1	ADP ribosylation factor like GTPase 14 effector protein	protein-coding
152560	chr22	21025221	21025900	+	0	NA	intron (NM_005446, intron 8 of 11)	L2b|LINE|L2	7001	NM_004173	6545		NM_004173	ENSG00000099960	SLC7A4	CAT-4|CAT4|HCAT3|VH	solute carrier family 7 member 4	protein-coding
110466	chr19	2012201	2012400	+	0	NA	intron (NM_017797, intron 1 of 8)	AluSg|SINE|Alu	3414	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
142561	chr20	5204151	5204450	+	0	NA	Intergenic	L3|LINE|CR1	77292	NM_003818	8760		NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding
92596	chr17	9529151	9529430	+	0	NA	intron (NR_033656, intron 2 of 5)	intron (NR_033656, intron 2 of 5)	46530	NM_004853	9482		NM_004853	ENSG00000170310	STX8	CARB	syntaxin 8	protein-coding
120643	chr19	45071871	45072480	+	0	NA	exon (NM_145288, exon 3 of 3)	exon (NM_145288, exon 3 of 3)	-3452	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
213849	chr7	142012921	142013180	+	0	NA	intron (NM_004668, intron 3 of 47)	MLT1H1|LTR|ERVL-MaLR	17171	NM_004668	8972		NM_004668	ENSG00000257335	MGAM	MG|MGA	maltase-glucoamylase	protein-coding
139180	chr2	219215901	219216100	+	0	NA	exon (NM_005689, exon 5 of 19)	exon (NM_005689, exon 5 of 19)	2958	NM_005689	10058		NM_005689	ENSG00000115657	ABCB6	ABC|LAN|MTABC3|PRP|umat	ATP binding cassette subfamily B member 6 (LAN blood group)	protein-coding
117742	chr19	29645751	29646250	+	0	NA	Intergenic	Intergenic	-19461	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
91192	chr17	3889921	3890730	+	0	NA	intron (NM_172207, intron 1 of 15)	intron (NM_172207, intron 1 of 15)	418	NM_172206	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
22261	chr1	212665121	212665880	+	0	NA	Intergenic	Intergenic	34340	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
152689	chr22	21625051	21625250	+	0	NA	Intergenic	Intergenic	4872	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
121546	chr19	47249101	47249480	+	0	NA	Intergenic	AluY|SINE|Alu	-7235	NM_015603	26093		NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding
116152	chr19	17385951	17386850	+	0	NA	Intergenic	AluSx3|SINE|Alu	-9058	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
81726	chr16	11297121	11298050	+	0	NA	Intergenic	Intergenic	8942	NR_031678	100313773		NR_031678	ENSG00000221801	MIR548H2	MIR548H-2|MIRN548H2	microRNA 548h-2	ncRNA
50468	chr12	47765321	47765850	+	0	NA	Intergenic	Intergenic	-6705	NM_001098531	10411		NM_006105	ENSG00000079337	RAPGEF3	CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910	Rap guanine nucleotide exchange factor 3	protein-coding
80028	chr16	1944901	1945100	+	0	NA	intron (NM_005061, intron 9 of 9)	intron (NM_005061, intron 9 of 9)	-1801	NM_001382264	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
50100	chr12	44853851	44853950	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	21761	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
199050	chr6	111481871	111484800	+	0	NA	promoter-TSS (NR_034111)	promoter-TSS (NR_034111)	-117	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
161741	chr3	44477371	44478450	+	0	NA	promoter-TSS (NM_001369454)	promoter-TSS (NM_001369454)	-240	NM_001369454	353274		NM_181489	ENSG00000185219	ZNF445	ZFP445|ZKSCAN15|ZNF168|ZSCAN47	zinc finger protein 445	protein-coding
145970	chr20	46330451	46330550	+	0	NA	Intergenic	Intergenic	-22002	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
22460	chr1	221631701	221632100	+	0	NA	Intergenic	Intergenic	105000	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
22108	chr1	211677071	211677400	+	0	NA	intron (NR_148994, intron 2 of 3)	MSTD|LTR|ERVL-MaLR	1473	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
111099	chr19	3196951	3197630	+	0	NA	intron (NM_020170, intron 4 of 14)	intron (NM_020170, intron 4 of 14)	11360	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
151019	chr21	44484871	44486030	+	0	NA	promoter-TSS (NR_155204)	promoter-TSS (NR_155204)	-121	NR_155204	111216286		NR_155204		LINC02575	-	long intergenic non-protein coding RNA 2575	ncRNA
85900	chr16	57068851	57069150	+	0	NA	intron (NM_001384955, intron 35 of 47)	L1MC4|LINE|L1	-23583	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
105598	chr18	655551	656150	+	0	NA	intron (NM_001012716, intron 1 of 1)	MER4B|LTR|ERV1	-1803	NM_001354867	7298		NM_001071	ENSG00000176890	TYMS	DKCD|HST422|TMS|TS	thymidylate synthetase	protein-coding
155971	chr22	39898801	39899400	+	0	NA	Intergenic	Intergenic	-1984	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
26066	chr10	12782551	12782650	+	0	NA	intron (NM_153498, intron 5 of 10)	intron (NM_153498, intron 5 of 10)	-57247	NR_031752	100313841		NR_031752	ENSG00000221331	MIR548Q	-	microRNA 548q	ncRNA
224858	chr9	30069271	30069430	+	0	NA	Intergenic	AluSq|SINE|Alu	339104	NR_046204	401497		NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
158089	chr22	49995001	49995200	+	0	NA	3' UTR (NM_001001694, exon 15 of 15)	3' UTR (NM_001001694, exon 15 of 15)	17665	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
133545	chr2	120343071	120343750	+	0	NA	Intergenic	Intergenic	-2726	NM_002193	3625		NM_002193	ENSG00000163083	INHBB	-	inhibin subunit beta B	protein-coding
128345	chr2	54866871	54867030	+	0	NA	intron (NM_001039753, intron 13 of 40)	intron (NM_001039753, intron 13 of 40)	141938	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
22495	chr1	221735121	221735530	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	1575	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
22801	chr1	224513651	224514000	+	0	NA	intron (NM_001322302, intron 2 of 6)	intron (NM_001322302, intron 2 of 6)	78976	NR_136293	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
61084	chr13	48402321	48402680	+	0	NA	intron (NM_000321, intron 17 of 26)	AluJr|SINE|Alu	10613	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
78961	chr15	101376571	101377130	+	0	NA	intron (NM_001291309, intron 9 of 19)	intron (NM_001291309, intron 9 of 19)	42413	NR_132373	105371027		NR_132373	ENSG00000259764	PCSK6-AS1	-	PCSK6 antisense RNA 1	ncRNA
111142	chr19	3281801	3282600	+	0	NA	exon (NM_001172673, exon 7 of 12)	exon (NM_001172673, exon 7 of 12)	56922	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
126556	chr2	28618771	28619200	+	0	NA	intron (NM_153021, intron 46 of 57)	intron (NM_153021, intron 46 of 57)	52628	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
128870	chr2	64036301	64037300	+	0	NA	Intergenic	Intergenic	-17372	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
132794	chr2	110211101	110211300	+	0	NA	TTS (NM_001384134)	TTS (NM_001384134)	1347	NM_001384134	205251		NM_174925	ENSG00000175701	MTLN	LEMP|LINC00116|MOXI|MPM|NCRNA00116|SMIM37|TILR	mitoregulin	protein-coding
84928	chr16	31261721	31261980	+	0	NA	intron (NM_000632, intron 2 of 29)	intron (NM_000632, intron 2 of 29)	1875	NM_000632	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
49103	chr12	14723751	14724130	+	0	NA	Intergenic	Intergenic	-27341	NM_004963	2984		NM_004963	ENSG00000070019	GUCY2C	DIAR6|GC-C|GCC|GUC2C|HSER|MECIL|MUCIL|STAR	guanylate cyclase 2C	protein-coding
211992	chr7	114026601	114027030	+	0	NA	Intergenic	Intergenic	-59512	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
186924	chr5	139610751	139611250	+	0	NA	intron (NM_003339, intron 2 of 6)	intron (NM_003339, intron 2 of 6)	-36299	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
120175	chr19	42254901	42256500	+	0	NA	promoter-TSS (NM_006494)	promoter-TSS (NM_006494)	-572	NM_001312656	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
148209	chr20	63567151	63569280	+	0	NA	promoter-TSS (NM_033405)	promoter-TSS (NM_033405)	-461	NM_033405	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
66680	chr14	63941151	63941350	+	0	NA	intron (NM_015180, intron 3 of 114)	intron (NM_015180, intron 3 of 114)	88246	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
138480	chr2	206989151	206989450	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	49782	NM_173077	130749		NM_173077	ENSG00000144410	CPO	-	carboxypeptidase O	protein-coding
4670	chr1	22451271	22452930	+	0	NA	intron (NM_001330398, intron 1 of 15)	CpG	249	NM_001083621	9923		NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
190823	chr6	1526721	1527380	+	0	NA	Intergenic	Intergenic	-78481	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
91508	chr17	4946121	4946380	+	0	NA	3' UTR (NM_001375991, exon 2 of 2)	3' UTR (NM_001375991, exon 2 of 2)	2280	NM_001375991	5216		NM_005022	ENSG00000108518	PFN1	ALS18	profilin 1	protein-coding
103844	chr17	79701271	79701630	+	0	NA	Intergenic	Intergenic	5799	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	mir-4739	microRNA 4739	ncRNA
82313	chr16	15672151	15673750	+	0	NA	intron (NM_017668, intron 3 of 8)	intron (NM_017668, intron 3 of 8)	22705	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
132693	chr2	108966551	108966850	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	22520	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
70540	chr14	102512401	102513000	+	0	NA	Intergenic	Intergenic	-2924	NM_001348652	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
96062	chr17	39575271	39575430	+	0	NA	Intergenic	Intergenic	32570	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
45207	chr11	117823121	117824630	+	0	NA	intron (NM_001204268, intron 6 of 10)	intron (NM_001204268, intron 6 of 10)	869	NM_001680	486		NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
229154	chr9	114494751	114494850	+	0	NA	intron (NM_015404, intron 1 of 11)	MIR|SINE|MIR	8415	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
219101	chr8	65930471	65931100	+	0	NA	Intergenic	Intergenic	-84193	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
154707	chr22	36413221	36413700	+	0	NA	Intergenic	Intergenic	-25493	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
69913	chr14	99512621	99512980	+	0	NA	TTS (NM_001099402)	TTS (NM_001099402)	31391	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
218293	chr8	42387771	42388130	+	0	NA	Intergenic	AluJr|SINE|Alu	-3811	NM_001135694	7419		NM_005662	ENSG00000078668	VDAC3	HD-VDAC3|VDAC-3	voltage dependent anion channel 3	protein-coding
30263	chr10	75126521	75126780	+	0	NA	intron (NM_144660, intron 1 of 4)	AluJo|SINE|Alu	14994	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
184886	chr5	112703501	112703700	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-3898	NM_001354895	324		NM_000038	ENSG00000134982	APC	BTPS2|DESMD|DP2|DP2.5|DP3|GS|PPP1R46	APC regulator of WNT signaling pathway	protein-coding
131410	chr2	96280201	96280780	+	0	NA	intron (NM_014014, intron 35 of 44)	AluJb|SINE|Alu	14265	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
194249	chr6	32521601	32522100	+	0	NA	intron (NM_002125, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	8437	NM_002125	3127		NM_002125	ENSG00000198502	HLA-DRB5	DRB5|HLA-DRB5*	major histocompatibility complex, class II, DR beta 5	protein-coding
184507	chr5	100896971	100897380	+	0	NA	intron (NM_175052, intron 1 of 2)	intron (NM_175052, intron 1 of 2)	6107	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
221245	chr8	122561351	122561650	+	0	NA	intron (NR_131202, intron 2 of 3)	Tigger1|DNA|TcMar-Tigger	7144	NR_131202	105375734		NR_131202		SMILR	-	smooth muscle induced lncRNA, enhancer of proliferation	ncRNA
136335	chr2	175203601	175203880	+	0	NA	Intergenic	Intergenic	-22030	NM_001002258	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
122179	chr19	48912101	48912300	+	0	NA	intron (NM_006184, intron 5 of 12)	AluJr|SINE|Alu	6691	NR_046633	100874085		NR_046633	ENSG00000235191	NUCB1-AS1	-	NUCB1 antisense RNA 1	ncRNA
27750	chr10	35197001	35197350	+	0	NA	intron (NM_001352446, intron 1 of 2)	intron (NM_001352446, intron 1 of 2)	1273	NM_182724	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
29813	chr10	72306571	72306950	+	0	NA	Intergenic	AluSx1|SINE|Alu	32836	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
113046	chr19	8017771	8018180	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-12334	NM_001419	1994		NM_001419	ENSG00000066044	ELAVL1	ELAV1|HUR|Hua|MelG	ELAV like RNA binding protein 1	protein-coding
1645	chr1	3794321	3794780	+	0	NA	intron (NM_020710, intron 1 of 6)	AluSz|SINE|Alu	1948	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
46821	chr11	130448321	130448850	+	0	NA	promoter-TSS (NM_139055)	promoter-TSS (NM_139055)	-389	NM_139055	170689		NM_139055	ENSG00000166106	ADAMTS15	DA12	ADAM metallopeptidase with thrombospondin type 1 motif 15	protein-coding
25642	chr10	8230901	8231130	+	0	NA	Intergenic	Intergenic	37290	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
168995	chr3	152422571	152422730	+	0	NA	intron (NM_207295, intron 3 of 8)	L1PA7|LINE|L1	-81660	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
186199	chr5	134225421	134227800	+	0	NA	promoter-TSS (NM_002715)	promoter-TSS (NM_002715)	-537	NM_002715	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
227274	chr9	89379101	89379300	+	0	NA	exon (NM_006378, exon 18 of 18)	exon (NM_006378, exon 18 of 18)	60349	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
83481	chr16	27399301	27400580	+	0	NA	Intergenic	Intergenic	-2234	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
231434	chr9	131251351	131251650	+	0	NA	Intergenic	Intergenic	25010	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
171876	chr4	772651	773250	+	0	NA	Intergenic	Intergenic	8898	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
63397	chr13	114070701	114071200	+	0	NA	intron (NM_001320821, intron 2 of 25).2	CpG	7005	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
108433	chr18	69959471	69959900	+	0	NA	Intergenic	L1MC5a|LINE|L1	-2886	NM_006566	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
182203	chr5	56832071	56832650	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	16811	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
169354	chr3	160403021	160403480	+	0	NA	intron (NM_005496, intron 3 of 22)	intron (NM_005496, intron 3 of 22)	-1338	NR_029663	406949		NR_029663	ENSG00000207779	MIR15B	MIRN15B|hsa-mir-15b|miR-15b	microRNA 15b	ncRNA
186042	chr5	134041601	134042730	+	0	NA	Intergenic	Intergenic	-37190	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
57144	chr12	121238221	121238480	+	0	NA	3' UTR (NM_001270486, exon 16 of 16)	3' UTR (NM_001270486, exon 16 of 16)	28221	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
194027	chr6	31829901	31831100	+	0	NA	TTS (NM_005346).2	TTS (NM_005346).2	2762	NM_005346	3304		NM_005346	ENSG00000204388	HSPA1B	HSP70-1|HSP70-1B|HSP70-2|HSP70.1|HSP70.2|HSP72|HSPA1|HSX70	heat shock protein family A (Hsp70) member 1B	protein-coding
46128	chr11	123033851	123034350	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	16534	NR_027288	341056		NR_027288		SAE1P1	-	SAE1 pseudogene 1	pseudo
33849	chr10	124234071	124234980	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-140927	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
4918	chr1	23897501	23898450	+	0	NA	intron (NM_001841, intron 1 of 1)	MIRb|SINE|MIR	15387	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
44392	chr11	103068521	103068780	+	0	NA	intron (NM_001318741, intron 3 of 6)	L1PA14|LINE|L1	23510	NM_032299	84259		NM_032299	ENSG00000137692	DCUN1D5	DCNL5|SCCRO5	defective in cullin neddylation 1 domain containing 5	protein-coding
164574	chr3	64018171	64018530	+	0	NA	intron (NM_014814, intron 5 of 7)	MER58C|DNA|hAT-Charlie	5122	NM_001271781	9861		NM_014814	ENSG00000163636	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	proteasome 26S subunit, non-ATPase 6	protein-coding
62372	chr13	99230671	99231500	+	0	NA	intron (NR_026644, intron 1 of 8)	MLT1D|LTR|ERVL-MaLR	27343	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
127077	chr2	37555451	37555750	+	0	NA	Intergenic	Intergenic	116042	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
111393	chr19	3751001	3751200	+	0	NA	TTS (NM_001267561)	TTS (NM_001267561)	10592	NM_004886	9546		NM_004886	ENSG00000011132	APBA3	MGC:15815|X11L2|mint3	amyloid beta precursor protein binding family A member 3	protein-coding
151313	chr21	45552321	45552580	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	-10010	NM_001205206	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
205189	chr7	7672701	7673200	+	0	NA	intron (NM_002947, intron 4 of 7)	intron (NM_002947, intron 4 of 7)	32198	NM_001302348	729852		NM_001302348	ENSG00000219545	UMAD1	RPA3-AS1|RPA3OS	UBAP1-MVB12-associated (UMA) domain containing 1	protein-coding
135187	chr2	158351651	158351750	+	0	NA	intron (NM_001301685, intron 2 of 6)	L1PA2|LINE|L1	105053	NM_001301685	130940		NM_138803	ENSG00000153237	CCDC148	-	coiled-coil domain containing 148	protein-coding
177453	chr4	113564871	113565830	+	0	NA	intron (NM_172129, intron 4 of 17)	intron (NM_172129, intron 4 of 17)	196388	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
46783	chr11	130004621	130004930	+	0	NA	non-coding (NR_024233, exon 1 of 1)	non-coding (NR_024233, exon 1 of 1)	-1940	NM_199437	56980		NM_020228	ENSG00000170325	PRDM10	BHD2|PFM7|TRIS	PR/SET domain 10	protein-coding
17026	chr1	156060801	156061230	+	0	NA	promoter-TSS (NM_020387)	promoter-TSS (NM_020387)	-145	NM_020387	57111		NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
94679	chr17	30499701	30500300	+	0	NA	intron (NM_004871, intron 6 of 8)	intron (NM_004871, intron 6 of 8)	22592	NM_001007024	9527		NM_004871	ENSG00000108587	GOSR1	GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28	golgi SNAP receptor complex member 1	protein-coding
42818	chr11	72825821	72826350	+	0	NA	intron (NM_033388, intron 10 of 17)	intron (NM_033388, intron 10 of 17)	11674	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
189435	chr5	172929971	172930150	+	0	NA	intron (NM_001031711, intron 7 of 9)	AluSx3|SINE|Alu	14977	NR_162113	113218510		NR_162113		MIR10523	-	microRNA 10523	ncRNA
73706	chr15	45119801	45120000	+	0	NA	intron (NM_144565, intron 8 of 10)	intron (NM_144565, intron 8 of 10)	3143	NM_001276265	90527		NM_144565	ENSG00000140254	DUOXA1	NIP|NUMBIP|mol	dual oxidase maturation factor 1	protein-coding
62901	chr13	110857201	110857660	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	12878	NR_027701	283487		NM_178514	ENSG00000255874	PRECSIT	C13orf29|LINC00346|NCRNA00346	p53 regulated carcinoma associated Stat3 activating long intergenic non-protein coding transcript	ncRNA
77504	chr15	84650171	84650530	+	0	NA	intron (NR_130946, intron 3 of 7)	AluSz|SINE|Alu	3896	NR_130944	84942		NM_032856	ENSG00000177082	WDR73	GAMOS|GAMOS1|HSPC264	WD repeat domain 73	protein-coding
95646	chr17	37954101	37954400	+	0	NA	Intergenic	Intergenic	29778	NM_001291464	101060351		NM_001291464	ENSG00000273513	TBC1D3K	-	TBC1 domain family member 3K	protein-coding
193941	chr6	31658901	31659100	+	0	NA	TTS (NM_001256169).3	TTS (NM_001256169).3	1778	NM_021184	57827		NM_021184	ENSG00000204439	C6orf47	D6S53E|G4|NG34	chromosome 6 open reading frame 47	protein-coding
89301	chr16	88712721	88713430	+	0	NA	intron (NM_001318507, intron 7 of 14)	intron (NM_001318507, intron 7 of 14)	3262	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
155308	chr22	38193971	38194130	+	0	NA	Intergenic	Intergenic	-7882	NM_001161572	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
93040	chr17	17305401	17306230	+	0	NA	intron (NM_020201, intron 1 of 4)	MIR3|SINE|MIR	2442	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
105566	chr18	75901	76130	+	0	NA	Intergenic	CpG	-26458	NM_001358689	260334		NM_001358689	ENSG00000173213	TUBB8B	TUBB8P12	tubulin beta 8B	protein-coding
158383	chr22	50490801	50491230	+	0	NA	TTS (NM_017584)	TTS (NM_017584)	4156	NM_017584	55586		NM_017584	ENSG00000100253	MIOX	ALDRL6	myo-inositol oxygenase	protein-coding
84364	chr16	30234171	30234930	+	0	NA	intron (NM_001321892, intron 4 of 8)	intron (NM_001321892, intron 4 of 8)	11305	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
216800	chr8	22552571	22553230	+	0	NA	intron (NM_005775, intron 1 of 20)	intron (NM_005775, intron 1 of 20)	973	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
107722	chr18	49816101	49816300	+	0	NA	intron (NR_117096, intron 1 of 3)	Tigger3c|DNA|TcMar-Tigger	2177	NR_117096	103091864		NR_117096	ENSG00000267322	SNHG22	SCARNA17|SCARNA17HG	small nucleolar RNA host gene 22	ncRNA
90194	chr17	410801	411530	+	0	NA	intron (NM_001013672, intron 1 of 1).2	intron (NM_001013672, intron 1 of 1).2	840	NM_001013672	400566		NM_001013672	ENSG00000187624	LIAT1	C17orf97|CK20	ligand of ATE1	protein-coding
2272	chr1	8930101	8930500	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-15568	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
89972	chr16	89822571	89822730	+	0	NA	Intergenic	Intergenic	-5825	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
210272	chr7	99413351	99413450	+	0	NA	intron (NM_001370410, intron 3 of 5)	intron (NM_001370410, intron 3 of 5)	4228	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
76155	chr15	72685651	72686900	+	0	NA	promoter-TSS (NM_001320665)	promoter-TSS (NM_001320665)	68	NM_033028	585		NM_033028	ENSG00000140463	BBS4	-	Bardet-Biedl syndrome 4	protein-coding
117405	chr19	19620521	19621030	+	0	NA	Intergenic	Intergenic	-2088	NR_038198	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
133827	chr2	127876071	127876430	+	0	NA	intron (NM_031445, intron 2 of 7)	AluJo|SINE|Alu	8610	NM_031445	83607		NM_031445	ENSG00000144233	AMMECR1L	-	AMMECR1 like	protein-coding
42111	chr11	67601071	67601230	+	0	NA	Intergenic	Intergenic	5556	NR_130935	100505621		NM_173578	ENSG00000184224	NDUFV1-DT	C11orf72	NDUFV1 divergent transcript	ncRNA
203829	chr7	1420271	1420430	+	0	NA	Intergenic	AluY|SINE|Alu	39120	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
92282	chr17	8075621	8075880	+	0	NA	intron (NM_001139, intron 11 of 14)	intron (NM_001139, intron 11 of 14)	11966	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
194276	chr6	32627471	32628200	+	0	NA	Intergenic	AluSq|SINE|Alu	-9571	NM_002122	3117		NM_002122	ENSG00000196735	HLA-DQA1	CELIAC1|DQ-A1|DQA1|HLA-DQA|HLA-DQA1*|HLA-DQB1	major histocompatibility complex, class II, DQ alpha 1	protein-coding
67663	chr14	73114701	73115300	+	0	NA	intron (NM_021239, intron 18 of 18)	intron (NM_021239, intron 18 of 18)	-21507	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
32381	chr10	102412021	102412280	+	0	NA	exon (NM_002779, exon 7 of 17)	exon (NM_002779, exon 7 of 17)	-2873	NR_073110	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
224677	chr9	21144651	21144950	+	0	NA	Intergenic	Intergenic	-2899	NM_002177	3467		NM_002177	ENSG00000177047	IFNW1	-	interferon omega 1	protein-coding
211618	chr7	106008851	106009900	+	0	NA	intron (NM_001301161, intron 7 of 17)	intron (NM_001301161, intron 7 of 17)	46111	NM_152750	222256		NM_152750	ENSG00000128536	CDHR3	CDH28	cadherin related family member 3	protein-coding
218415	chr8	47598071	47598930	+	0	NA	intron (NR_104581, intron 7 of 16)	MIRb|SINE|MIR	-55588	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
16692	chr1	155205051	155205580	+	0	NA	exon (NM_001252607, exon 3 of 22)	exon (NM_001252607, exon 3 of 22)	2582	NM_001252608	7059		NM_007112	ENSG00000169231	THBS3	TSP3	thrombospondin 3	protein-coding
145699	chr20	45018371	45019180	+	0	NA	intron (NM_006282, intron 9 of 10)	AluJr|SINE|Alu	52263	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
75581	chr15	67082101	67082580	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	16738	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
71589	chr14	106510821	106511680	+	0	NA	Intergenic	Intergenic	28811	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
215953	chr8	8384751	8385050	+	0	NA	intron (NR_163138, intron 1 of 6)	intron (NR_163138, intron 1 of 6)	1344	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
31816	chr10	99246701	99246900	+	0	NA	Intergenic	Intergenic	-10925	NM_001166246	60495		NM_021828	ENSG00000172987	HPSE2	HPA2|HPR2|UFS|UFS1	heparanase 2 (inactive)	protein-coding
166828	chr3	122843721	122844050	+	0	NA	intron (NM_032839, intron 4 of 8)	L1MC5|LINE|L1	-42628	NR_024618	100129550		NR_024618	ENSG00000273033	LINC02035	-	long intergenic non-protein coding RNA 2035	ncRNA
104342	chr17	80971701	80971900	+	0	NA	promoter-TSS (NR_148968)	promoter-TSS (NR_148968)	-587	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
116384	chr19	17944971	17945500	+	0	NA	Intergenic	Intergenic	-6067	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
150637	chr21	43398151	43398250	+	0	NA	Intergenic	Intergenic	28931	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
42450	chr11	69324121	69324380	+	0	NA	Intergenic	(TGGTGG)n|Simple_repeat|Simple_repeat	30095	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
173437	chr4	8227221	8227680	+	0	NA	non-coding (NR_134639, exon 10 of 15)	non-coding (NR_134639, exon 10 of 15)	28160	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
147389	chr20	58659651	58660400	+	0	NA	intron (NM_001134773, intron 2 of 8)	intron (NM_001134773, intron 2 of 8)	8742	NM_001204868	8675		NM_003763	ENSG00000124222	STX16	SYN-16|SYN16	syntaxin 16	protein-coding
82235	chr16	15035371	15035730	+	0	NA	exon (NM_001285444, exon 21 of 22)	exon (NM_001285444, exon 21 of 22)	20524	NM_173474	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
230842	chr9	129098401	129098600	+	0	NA	intron (NM_001346547, intron 9 of 13)	intron (NM_001346547, intron 9 of 13)	12293	NM_001346547	1384		NM_000755	ENSG00000095321	CRAT	CAT|CAT1|NBIA8	carnitine O-acetyltransferase	protein-coding
46056	chr11	122725371	122725800	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	69863	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
102522	chr17	75814671	75815030	+	0	NA	intron (NM_001080419, intron 6 of 15)	intron (NM_001080419, intron 6 of 15)	29554	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
133321	chr2	113893201	113893650	+	0	NA	intron (NM_001277140, intron 1 of 11)	AluSc|SINE|Alu	-2433	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128521	chr2	60707621	60708050	+	0	NA	Intergenic	Intergenic	-48433	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
9055	chr1	44817051	44817150	+	0	NA	Intergenic	L1ME3G|LINE|L1	8618	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
132288	chr2	105054371	105054830	+	0	NA	intron (NM_182640, intron 2 of 10)	intron (NM_182640, intron 2 of 10)	-16104	NR_110603	102724691		NR_110603	ENSG00000224509	MRPS9-AS2	-	MRPS9 antisense RNA 2	ncRNA
3931	chr1	17441551	17442050	+	0	NA	Intergenic	Intergenic	-2123	NM_018715	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
38549	chr11	45914401	45914800	+	0	NA	intron (NM_057174, intron 6 of 10)	intron (NM_057174, intron 6 of 10)	3277	NM_057174	9409		NM_004813	ENSG00000121680	PEX16	PBD8A|PBD8B	peroxisomal biogenesis factor 16	protein-coding
215603	chr7	159060401	159060650	+	0	NA	intron (NR_130758, intron 4 of 12)	(CACCT)n|Simple_repeat|Simple_repeat	36679	NM_001308259	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
113373	chr19	8763301	8763700	+	0	NA	Intergenic	AluY|SINE|Alu	32546	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
81203	chr16	4493971	4494130	+	0	NA	intron (NM_001286269, intron 2 of 6)	AluY|SINE|Alu	-1769	NM_001286270	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
49078	chr12	14429921	14430180	+	0	NA	intron (NM_001286515, intron 2 of 12)	L2|LINE|L2	44769	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
218688	chr8	58513171	58513590	+	0	NA	Intergenic	Intergenic	-13217	NM_000780	1581		NM_000780	ENSG00000167910	CYP7A1	CP7A|CYP7|CYPVII	cytochrome P450 family 7 subfamily A member 1	protein-coding
195112	chr6	35625621	35625880	+	0	NA	intron (NM_001145775, intron 4 of 11)	intron (NM_001145775, intron 4 of 11)	39039	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
95428	chr17	36107471	36108800	+	0	NA	Intergenic	Intergenic	4308	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
211485	chr7	105132321	105132580	+	0	NA	intron (NM_182691, intron 12 of 14)	intron (NM_182691, intron 12 of 14)	118245	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
142636	chr20	5692001	5692200	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-58287	NM_001303478	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
22286	chr1	212779501	212779700	+	0	NA	intron (NM_001042549, intron 4 of 6)	SVA_D|Retroposon|SVA	12177	NM_001297739	25936		NM_015471	ENSG00000117697	NSL1	C1orf48|DC8|MIS14	NSL1 component of MIS12 kinetochore complex	protein-coding
80398	chr16	2580121	2580430	+	0	NA	intron (NM_031268, intron 4 of 10)	intron (NM_031268, intron 4 of 10)	-23109	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
222968	chr8	143202021	143202750	+	0	NA	Intergenic	Intergenic	-10833	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
188187	chr5	150623701	150623900	+	0	NA	intron (NM_001166209, intron 2 of 2)	intron (NM_001166209, intron 2 of 2)	6156	NM_001166209	11346		NM_007286	ENSG00000171992	SYNPO	SYNPO1	synaptopodin	protein-coding
17158	chr1	156204221	156204480	+	0	NA	intron (NM_001377390, intron 3 of 3)	intron (NM_001377390, intron 3 of 3)	-8638	NM_001199663	100527963		NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF-1|PMF1	PMF1-BGLAP readthrough	protein-coding
94168	chr17	28383971	28385450	+	0	NA	intron (NM_015077, intron 3 of 8)	CpG	13016	NM_015077	23098		NM_015077	ENSG00000004139	SARM1	HsTIR|MyD88-5|SAMD2|SARM|hSARM1	sterile alpha and TIR motif containing 1	protein-coding
63199	chr13	113790701	113791350	+	0	NA	intron (NM_001348663, intron 3 of 7)	intron (NM_001348663, intron 3 of 7)	-24585	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
173896	chr4	24585571	24585730	+	0	NA	Intergenic	Intergenic	-1096	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
27270	chr10	30026871	30028700	+	0	NA	exon (NM_001350021, exon 4 of 5)	exon (NM_001350021, exon 4 of 5)	31801	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
58976	chr13	19864401	19865530	+	0	NA	Intergenic	Intergenic	-1316	NM_001142684	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
94400	chr17	28976721	28976980	+	0	NA	intron (NM_178860, intron 3 of 16)	L2b|LINE|L2	-25332	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
116230	chr19	17529601	17530000	+	0	NA	intron (NM_001321828, intron 1 of 13)	AluJr|SINE|Alu	2531	NM_001321828	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
48707	chr12	10667451	10667830	+	0	NA	intron (NM_018423, intron 1 of 10)	AluJb|SINE|Alu	6412	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
17851	chr1	159921401	159922600	+	0	NA	intron (NM_003564, intron 1 of 4)	intron (NM_003564, intron 1 of 4)	1734	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
4742	chr1	23426721	23426980	+	0	NA	Intergenic	L2a|LINE|L2	-2102	NM_003196	6920		NM_003196	ENSG00000204219	TCEA3	TFIIS|TFIIS.H	transcription elongation factor A3	protein-coding
181117	chr5	37295871	37296030	+	0	NA	intron (NM_153485, intron 32 of 34)	SVA_C|Retroposon|SVA	-46522	NM_023073	65250		NM_023073	ENSG00000197603	CPLANE1	C5orf42|Hug|JBTS17|OFD6	ciliogenesis and planar polarity effector complex subunit 1	protein-coding
22073	chr1	211344001	211344500	+	0	NA	intron (NM_001319207, intron 1 of 10)	intron (NM_001319207, intron 1 of 10)	-2114	NM_145759	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
119369	chr19	40147571	40147930	+	0	NA	Intergenic	Intergenic	-43676	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
225751	chr9	37122951	37123280	+	0	NA	intron (NM_001289121, intron 1 of 8)	intron (NM_001289121, intron 1 of 8)	2517	NM_001289120	84186		NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
215704	chr8	1449901	1450440	+	0	NA	intron (NM_001346810, intron 3 of 14)	CpG	-147563	NR_111948	286083		NR_033895	ENSG00000275427	LOC286083	-	uncharacterized LOC286083	ncRNA
99804	chr17	51372501	51372730	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	35900	NR_122104	440446		NR_122104	ENSG00000267452	LINC02072	-	long intergenic non-protein coding RNA 2072	ncRNA
15477	chr1	150362801	150365700	+	0	NA	5' UTR (NM_001297673, exon 1 of 11)	5' UTR (NM_001297673, exon 1 of 11)	139	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
36522	chr11	6477171	6477330	+	0	NA	exon (NM_001370409, exon 8 of 8)	exon (NM_001370409, exon 8 of 8)	-2791	NM_001248006	10612		NM_006458	ENSG00000110171	TRIM3	BERP|HAC1|RNF22|RNF97	tripartite motif containing 3	protein-coding
127226	chr2	38624151	38624450	+	0	NA	Intergenic	AluYd8|SINE|Alu	-21264	NM_001142650	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
94861	chr17	31511421	31512080	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	-23133	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
93611	chr17	19147971	19148130	+	0	NA	intron (NM_001353418, intron 3 of 3)	AluY|SINE|Alu	14574	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
216214	chr8	11937271	11937630	+	0	NA	Intergenic	Intergenic	37149	NM_001033018	613210		NM_001033018	ENSG00000205884	DEFB136	DEFB137	defensin beta 136	protein-coding
53218	chr12	62283271	62283430	+	0	NA	intron (NM_001351164, intron 1 of 21)	L1M5|LINE|L1	22946	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
123708	chr19	55033101	55033300	+	0	NA	intron (NM_001083899, intron 1 of 7).8	CpG	5064	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
47760	chr12	6542951	6543450	+	0	NA	intron (NM_001039670, intron 8 of 9)	intron (NM_001039670, intron 8 of 9)	7936	NM_001256799	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
125032	chr2	9594651	9595150	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	36097	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
206490	chr7	33061151	33061450	+	0	NA	intron (NM_001374336, intron 1 of 10)	intron (NM_001374336, intron 1 of 10)	1476	NM_001002010	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
222996	chr8	143269251	143269700	+	0	NA	exon (NM_138465, exon 2 of 4)	exon (NM_138465, exon 2 of 4)	2030	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
59890	chr13	30735151	30736100	+	0	NA	promoter-TSS (NM_001629)	promoter-TSS (NM_001629)	82	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
107895	chr18	56748851	56748950	+	0	NA	intron (NM_052834, intron 14 of 26)	intron (NM_052834, intron 14 of 26)	97203	NM_001382485	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
44022	chr11	95037451	95037950	+	0	NA	Intergenic	CpG	12442	NM_001161630	390245		NM_001161630	ENSG00000235268	KDM4E	JMJD2E|KDM4DL|KDM5E	lysine demethylase 4E	protein-coding
190241	chr5	178547621	178547900	+	0	NA	intron (NM_173465, intron 2 of 28)	(CA)n|Simple_repeat|Simple_repeat	42633	NM_173465	91522		NM_173465	ENSG00000050767	COL23A1	-	collagen type XXIII alpha 1 chain	protein-coding
142114	chr20	2663721	2665230	+	0	NA	promoter-TSS (NM_001330763)	promoter-TSS (NM_001330763)	-252	NM_001258384	3420		NM_006899	ENSG00000101365	IDH3B	RP46	isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta	protein-coding
5083	chr1	24696601	24696800	+	0	NA	Intergenic	Intergenic	-48747	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
204943	chr7	6274221	6274480	+	0	NA	Intergenic	MIR3|SINE|MIR	-1726	NM_004227	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
173868	chr4	24471001	24471500	+	0	NA	intron (NR_148983, intron 1 of 15)	CpG	1655	NM_001330751	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
80156	chr16	2099871	2100030	+	0	NA	exon (NM_000296, exon 29 of 46)	exon (NM_000296, exon 29 of 46)	6798	NR_106965	102465985		NR_106965	ENSG00000283346	MIR6511B2	MIR6511B-2|hsa-mir-6511b-2	microRNA 6511b-2	ncRNA
157203	chr22	43147051	43147350	+	0	NA	Intergenic	AluSx|SINE|Alu	-3802	NM_173467	27349		NM_014507	ENSG00000100294	MCAT	FASN2C|MCT|MCT1|MT|NET62|OPA15|fabD	malonyl-CoA-acyl carrier protein transacylase	protein-coding
115352	chr19	15220801	15221200	+	0	NA	Intergenic	Intergenic	11448	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
17396	chr1	156621771	156621930	+	0	NA	promoter-TSS (NR_135113)	promoter-TSS (NR_135113)	78	NR_135113	101928177		NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
18457	chr1	161547171	161547330	+	0	NA	intron (NM_001127596, intron 4 of 5)	intron (NM_001127596, intron 4 of 5)	2568	NM_000569	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
47795	chr12	6574371	6574850	+	0	NA	intron (NM_001273, intron 37 of 39)	intron (NM_001273, intron 37 of 39)	-6319	NM_001258308	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
7305	chr1	32471101	32471300	+	0	NA	exon (NM_001145720, exon 2 of 4)	exon (NM_001145720, exon 2 of 4)	6128	NM_001145720	728116		NM_001145720	ENSG00000273274	ZBTB8B	ZNF916B	zinc finger and BTB domain containing 8B	protein-coding
54494	chr12	92079971	92081050	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	61203	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
65532	chr14	51916521	51917250	+	0	NA	intron (NR_126331, intron 2 of 2)	intron (NR_126331, intron 2 of 2)	1686	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
198775	chr6	108841201	108841800	+	0	NA	Intergenic	MIR3|SINE|MIR	-6916	NM_001286609	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
59865	chr13	30619551	30619930	+	0	NA	intron (NM_001321533, intron 1 of 6)	intron (NM_001321533, intron 1 of 6)	1820	NM_005800	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
143423	chr20	29761951	29762530	+	0	NA	Intergenic	Intergenic	-118144	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
232318	chr9	134830421	134830500	+	0	NA	intron (NM_001278074, intron 64 of 65)	intron (NM_001278074, intron 64 of 65)	18909	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	ncRNA
55956	chr12	110013871	110014230	+	0	NA	intron (NM_033121, intron 3 of 14)	intron (NM_033121, intron 3 of 14)	14620	NM_033121	88455		NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
213972	chr7	142796371	142796900	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	25665	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
119063	chr19	39127501	39127850	+	0	NA	intron (NM_001014834, intron 1 of 7)	L2b|LINE|L2	1889	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
68125	chr14	75514901	75516650	+	0	NA	Intergenic	Intergenic	-6694	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
206761	chr7	36696201	36696400	+	0	NA	intron (NM_001177506, intron 1 of 21)	L1M4a1|LINE|L1	28194	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
8128	chr1	39261821	39262400	+	0	NA	intron (NM_012090, intron 5 of 92)	intron (NM_012090, intron 5 of 92)	-146963	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
13645	chr1	116510471	116510630	+	0	NA	Intergenic	Intergenic	-31724	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
40893	chr11	65127701	65128700	+	0	NA	TTS (NR_037568)	TTS (NR_037568)	1778	NR_106809	102465449		NR_106809	ENSG00000284489	MIR6751	hsa-mir-6751	microRNA 6751	ncRNA
161412	chr3	41242951	41243050	+	0	NA	Intergenic	Intergenic	43495	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
29449	chr10	70432421	70433380	+	0	NA	3' UTR (NM_001329906, exon 3 of 3)	3' UTR (NM_001329906, exon 3 of 3)	8781	NM_018055	4838		NM_018055	ENSG00000156574	NODAL	HTX5	nodal growth differentiation factor	protein-coding
40922	chr11	65215551	65216150	+	0	NA	intron (NR_033396, intron 2 of 9)	intron (NR_033396, intron 2 of 9)	2010	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
87587	chr16	73058271	73059200	+	0	NA	5' UTR (NM_001164766, exon 1 of 9)	5' UTR (NM_001164766, exon 1 of 9)	286	NM_001164766	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
151160	chr21	44931941	44932100	+	0	NA	Intergenic	CpG	-3205	NM_001127491	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
225939	chr9	40991581	40993430	+	0	NA	non-coding (NR_034006, exon 1 of 6)	non-coding (NR_034006, exon 1 of 6)	244	NR_034006	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
34556	chr10	133127201	133128700	+	0	NA	intron (NM_001291085, intron 3 of 3)	intron (NM_001291085, intron 3 of 3)	25704	NM_001291085	84435		NM_032422	ENSG00000197177	ADGRA1	GPR123	adhesion G protein-coupled receptor A1	protein-coding
171849	chr4	708451	709000	+	0	NA	intron (NM_001317836, intron 1 of 11)	intron (NM_001317836, intron 1 of 11)	2893	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
12700	chr1	109489371	109489530	+	0	NA	intron (NM_001350177, intron 8 of 11)	intron (NM_001350177, intron 8 of 11)	-4586	NM_001134402	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
185480	chr5	131294571	131295050	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluSz6|SINE|Alu	30757	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
104193	chr17	80457701	80457900	+	0	NA	Intergenic	L2a|LINE|L2	18807	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
156097	chr22	40069351	40069650	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSp|SINE|Alu	24683	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
116017	chr19	17129301	17129900	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	37365	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
137594	chr2	197281251	197281650	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	21069	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
63027	chr13	112893951	112894650	+	0	NA	Intergenic	(CGCCC)n|Simple_repeat|Simple_repeat	74338	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
113079	chr19	8259551	8259850	+	0	NA	intron (NM_024552, intron 10 of 11)	L2a|LINE|L2	48658	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
141161	chr2	239260701	239260900	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-44662	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
73223	chr15	41621001	41622330	+	0	NA	Intergenic	CpG	-38747	NM_001164273	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
168482	chr3	143180521	143180780	+	0	NA	Intergenic	L1PA11|LINE|L1	60879	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
199444	chr6	117546171	117546880	+	0	NA	intron (NM_173674, intron 14 of 14)	intron (NM_173674, intron 14 of 14)	55986	NM_001017408	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
18935	chr1	168478021	168478280	+	0	NA	intron (NR_125956, intron 4 of 4)	intron (NR_125956, intron 4 of 4)	17494	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
122146	chr19	48867321	48868500	+	0	NA	intron (NM_020904, intron 1 of 19)	intron (NM_020904, intron 1 of 19)	707	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
33413	chr10	118662221	118662680	+	0	NA	Intergenic	L1PBa|LINE|L1	-66802	NM_004248	2834		NM_004248	ENSG00000119973	PRLHR	GPR10|GR3|PrRPR	prolactin releasing hormone receptor	protein-coding
147083	chr20	53836401	53836600	+	0	NA	Intergenic	AluY|SINE|Alu	39209	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
222640	chr8	141129701	141130530	+	0	NA	intron (NM_014957, intron 1 of 22)	intron (NM_014957, intron 1 of 22)	1526	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
67009	chr14	67485621	67485880	+	0	NA	intron (NM_001348542, intron 2 of 2)	intron (NM_001348542, intron 2 of 2)	2971	NM_001348542	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
165255	chr3	73094201	73094400	+	0	NA	Intergenic	Intergenic	32641	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
236503	chrX	71817001	71817200	+	0	NA	Intergenic	L1PA5|LINE|L1	-32722	NR_034005	441501		NR_034005		LINC00891	-	long intergenic non-protein coding RNA 891	ncRNA
14829	chr1	146310351	146311050	+	0	NA	Intergenic	Intergenic	12709	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
176531	chr4	98141751	98142280	+	0	NA	intron (NM_174952, intron 1 of 10)	intron (NM_174952, intron 1 of 10)	1461	NM_174952	285555		NM_174952	ENSG00000163116	STPG2	C4orf37	sperm tail PG-rich repeat containing 2	protein-coding
160414	chr3	28253471	28253730	+	0	NA	intron (NM_001331185, intron 2 of 5)	AluJb|SINE|Alu	11981	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
154750	chr22	36493621	36494080	+	0	NA	intron (NM_024955, intron 7 of 8)	intron (NM_024955, intron 7 of 8)	-12210	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
84874	chr16	31176071	31176300	+	0	NA	Intergenic	AluSg|SINE|Alu	-3925	NM_001170634	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
82058	chr16	13632651	13632750	+	0	NA	Intergenic	MER41A|LTR|ERV1	-287454	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
83765	chr16	28715071	28715230	+	0	NA	intron (NM_001286478, intron 7 of 20)	intron (NM_001286478, intron 7 of 20)	3686	NM_003752	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
7754	chr1	36164671	36165030	+	0	NA	intron (NM_001286365, intron 1 of 15)	L2a|LINE|L2	8690	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
176816	chr4	102548051	102548850	+	0	NA	intron (NM_001382625, intron 6 of 24)	MER54A|LTR|ERVL	-45964	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
183060	chr5	73498121	73500030	+	0	NA	intron (NM_001037637, intron 1 of 5)	intron (NM_001037637, intron 1 of 5)	650	NM_001207	689		NM_001207	ENSG00000145741	BTF3	BETA-NAC|BTF3a|BTF3b|NACB	basic transcription factor 3	protein-coding
153230	chr22	23969901	23970350	+	0	NA	intron (NM_001084393, intron 2 of 2)	intron (NM_001084393, intron 2 of 2)	3237	NM_001084393	100037417		NM_001084393	ENSG00000099974	DDTL	DDT|KB-226F1.2	D-dopachrome tautomerase like	protein-coding
103434	chr17	78258451	78259750	+	0	NA	Intergenic	Intergenic	10784	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
143231	chr20	24984871	24986550	+	0	NA	intron (NM_020531, intron 1 of 8)	MLT1D-int|LTR|ERVL-MaLR	7041	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
89470	chr16	89084371	89084730	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-9302	NR_147928	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
62862	chr13	110558171	110558730	+	0	NA	intron (NM_017817, intron 1 of 1)	AluSq2|SINE|Alu	3272	NM_017817	55647		NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding
125298	chr2	10546901	10547300	+	0	NA	Intergenic	Intergenic	97372	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
106256	chr18	12308771	12308950	+	0	NA	intron (NM_001303526, intron 2 of 2)	CpG-12373	619	NM_032525	84617		NM_032525	ENSG00000176014	TUBB6	FPVEPD|HsT1601|TUBB-5	tubulin beta 6 class V	protein-coding
83790	chr16	28756201	28756400	+	0	NA	intron (NM_001287250, intron 1 of 6)	AluSg|SINE|Alu	3865	NM_001287250	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
195533	chr6	37325471	37326130	+	0	NA	intron (NM_017772, intron 12 of 12)	AluSx3|SINE|Alu	-28183	NM_183078	9025		NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
3206	chr1	13756421	13756930	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	7260	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
177188	chr4	108170521	108170800	+	0	NA	intron (NR_029374, intron 1 of 2)	intron (NR_029374, intron 1 of 2)	-1460	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
144751	chr20	36600821	36601130	+	0	NA	intron (NM_001199535, intron 2 of 4)	AluSx|SINE|Alu	-4804	NM_001199534	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
93319	chr17	18180971	18181550	+	0	NA	Intergenic	Intergenic	-2568	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
65736	chr14	53147301	53147950	+	0	NA	intron (NM_030637, intron 1 of 11)	intron (NM_030637, intron 1 of 11)	5698	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
129181	chr2	68172971	68173130	+	0	NA	intron (NM_001329916, intron 5 of 5)	intron (NM_001329916, intron 5 of 5)	15162	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
11468	chr1	89993471	89993980	+	0	NA	non-coding (NR_002830, exon 1 of 1)	non-coding (NR_002830, exon 1 of 1)	1241	NR_002830	492303		NR_002830		GEMIN8P4	-	gem nuclear organelle associated protein 8 pseudogene 4	pseudo
131829	chr2	98653701	98654250	+	0	NA	intron (NM_001160154, intron 5 of 12)	L1M4c|LINE|L1	9498	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
201827	chr6	150037351	150038630	+	0	NA	Intergenic	CpG	-12458	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
34752	chr11	184121	184730	+	0	NA	Intergenic	MER4B|LTR|ERV1	-8653	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
224699	chr9	21378671	21378830	+	0	NA	Intergenic	MER34B-int|LTR|ERV1	6648	NM_000605	3440		NM_000605	ENSG00000188379	IFNA2	IFN-alpha-2|IFN-alphaA|IFNA|IFNA2B|leIF A	interferon alpha 2	protein-coding
11100	chr1	85576851	85577630	+	0	NA	intron (NM_001134445, intron 1 of 6)	CpG	960	NM_001134445	23576		NM_012137	ENSG00000153904	DDAH1	DDAH|DDAH-1|DDAHI|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding
42617	chr11	72216271	72216630	+	0	NA	promoter-TSS (NM_001113536)	promoter-TSS (NM_001113536)	-344	NM_001113536	2350		NM_000803	ENSG00000165457	FOLR2	BETA-HFR|FBP|FBP/PL-1|FOLR1|FR-BETA|FR-P3|FRbeta	folate receptor beta	protein-coding
32689	chr10	103969071	103969580	+	0	NA	intron (NM_014720, intron 1 of 18)	L2c|LINE|L2	2185	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
64281	chr14	23379771	23380330	+	0	NA	TTS (NM_001037288)	TTS (NM_001037288)	3004	NM_001037288	116173		NM_138460	ENSG00000166091	CMTM5	CKLFSF5	CKLF like MARVEL transmembrane domain containing 5	protein-coding
38287	chr11	43316401	43316830	+	0	NA	intron (NM_001142931, intron 1 of 12)	intron (NM_001142931, intron 1 of 12)	4619	NR_024625	8539		NM_006595	ENSG00000166181	API5	AAC-11|AAC11	apoptosis inhibitor 5	protein-coding
145677	chr20	44986351	44986880	+	0	NA	intron (NM_006282, intron 4 of 10)	L2a|LINE|L2	20103	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
153384	chr22	24560001	24560400	+	0	NA	intron (NR_103819, intron 2 of 2)	AluSx3|SINE|Alu	4201	NM_004175	6634		NM_004175	ENSG00000100028	SNRPD3	SMD3|Sm-D3	small nuclear ribonucleoprotein D3 polypeptide	protein-coding
48219	chr12	8179801	8180650	+	0	NA	promoter-TSS (NR_026788)	promoter-TSS (NR_026788)	16	NR_026788	440078		NR_026788	ENSG00000226711	FAM66C	-	family with sequence similarity 66 member C	ncRNA
189527	chr5	173786821	173787080	+	0	NA	non-coding (NR_108028, exon 4 of 4)	non-coding (NR_108028, exon 4 of 4)	3992	NR_108028	101928154		NR_108028	ENSG00000254211	LINC01485	-	long intergenic non-protein coding RNA 1485	ncRNA
218326	chr8	42789751	42790650	+	0	NA	Intergenic	LTR15|LTR|ERV1	-21414	NM_001199279	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
199007	chr6	110983371	110983930	+	0	NA	intron (NM_032194, intron 1 of 9)	intron (NM_032194, intron 1 of 9)	1612	NM_032194	84154		NM_032194	ENSG00000197498	RPF2	BXDC1|bA397G5.4	ribosome production factor 2 homolog	protein-coding
198466	chr6	106178671	106178830	+	0	NA	Intergenic	L2c|LINE|L2	79809	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
156373	chr22	41090221	41090480	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2163	NR_031694	100302237		NR_031694	ENSG00000284015	MIR1281	MIRN1281|hsa-mir-1281	microRNA 1281	ncRNA
5710	chr1	26383821	26384750	+	0	NA	Intergenic	L1MB5|LINE|L1	-11491	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
71247	chr14	105192871	105194900	+	0	NA	Intergenic	Intergenic	-12562	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
169211	chr3	157076051	157076150	+	0	NA	Intergenic	Intergenic	-5741	NR_135546	105374177		NR_135546	ENSG00000241544	LINC02029	-	long intergenic non-protein coding RNA 2029	ncRNA
61043	chr13	48236621	48237530	+	0	NA	intron (NM_021999, intron 1 of 5)	intron (NM_021999, intron 1 of 5)	3869	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
227618	chr9	92763751	92766880	+	0	NA	promoter-TSS (NM_015250)	promoter-TSS (NM_015250)	-482	NM_001003800	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
92966	chr17	17107621	17108230	+	0	NA	intron (NM_015134, intron 3 of 22)	intron (NM_015134, intron 3 of 22)	65468	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
52519	chr12	56081721	56082330	+	0	NA	intron (NM_001005915, intron 1 of 2)	intron (NM_001005915, intron 1 of 2)	1860	NM_001982	2065		NM_001982	ENSG00000065361	ERBB3	ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|VSCN1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3	erb-b2 receptor tyrosine kinase 3	protein-coding
43033	chr11	74011421	74012980	+	0	NA	TTS (NM_001286577)	TTS (NM_001286577)	-2963	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
235986	chrX	53967271	53967430	+	0	NA	intron (NM_001184896, intron 18 of 21)	SVA_D|Retroposon|SVA	75797	NM_001184898	23133		NM_015107	ENSG00000172943	PHF8	JHDM1F|KDM7B|MRXSSD|ZNF422	PHD finger protein 8	protein-coding
144939	chr20	37017501	37017700	+	0	NA	intron (NM_183404, intron 19 of 20)	intron (NM_183404, intron 19 of 20)	-65892	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
201545	chr6	149210701	149211700	+	0	NA	Intergenic	Intergenic	-6724	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
189845	chr5	177110401	177111080	+	0	NA	Intergenic	AluJr|SINE|Alu	21190	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
46744	chr11	129192121	129192450	+	0	NA	promoter-TSS (NM_001142685)	promoter-TSS (NM_001142685)	40	NM_001142685	9743		NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding
57728	chr12	122885871	122886580	+	0	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	9899	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
216857	chr8	22615921	22616500	+	0	NA	non-coding (NR_033902, exon 14 of 21)	non-coding (NR_033902, exon 14 of 21)	11168	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
70815	chr14	103556001	103556200	+	0	NA	TTS (NM_001015049)	TTS (NM_001015049)	6220	NM_001015049	9529		NM_004873	ENSG00000166170	BAG5	BAG-5|CMD2F	BAG cochaperone 5	protein-coding
189370	chr5	172683671	172684700	+	0	NA	intron (NM_001142651, intron 3 of 4)	CpG-22784	22020	NR_049799	100847029		NR_049799	ENSG00000265160	MIR5003	-	microRNA 5003	ncRNA
113097	chr19	8281671	8282180	+	0	NA	Intergenic	AluSx1|SINE|Alu	26433	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
126880	chr2	32075321	32075780	+	0	NA	intron (NM_001363875, intron 1 of 15)	AluSz|SINE|Alu	11994	NM_001377959	6683		NM_014946	ENSG00000021574	SPAST	ADPSP|FSP2|SPG4	spastin	protein-coding
153017	chr22	23223451	23223830	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-39127	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
207574	chr7	44947401	44947800	+	0	NA	Intergenic	L1M5|LINE|L1	31415	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
234173	chrX	11763721	11763980	+	0	NA	exon (NM_006800, exon 7 of 12)	exon (NM_006800, exon 7 of 12)	4203	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
227485	chr9	91163901	91164300	+	0	NA	intron (NR_135306, intron 2 of 2)	MLT1G3|LTR|ERVL-MaLR	45038	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
102726	chr17	76199001	76199880	+	0	NA	intron (NM_052916, intron 2 of 18)	AluJb|SINE|Alu	41053	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
156079	chr22	40047101	40047630	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSq2|SINE|Alu	2548	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
24139	chr1	235840351	235840850	+	0	NA	intron (NM_001301365, intron 1 of 52)	MER5B|DNA|hAT-Charlie	12460	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
159727	chr3	15796901	15797500	+	0	NA	non-coding (NR_146112, exon 1 of 29)	non-coding (NR_146112, exon 1 of 29)	779	NM_001349284	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
214121	chr7	144194201	144194650	+	0	NA	promoter-TSS (NR_126023)	promoter-TSS (NR_126023)	-896	NR_126022	101928605		NR_126022		ARHGEF35-AS1	-	ARHGEF35 antisense RNA 1	ncRNA
173341	chr4	7757001	7757600	+	0	NA	intron (NR_026892, intron 1 of 1)	MER74A|LTR|ERVL	3210	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
191695	chr6	13618201	13618400	+	0	NA	intron (NM_016167, intron 5 of 7)	AluYb8|SINE|Alu	2965	NM_016167	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
198498	chr6	106439821	106440280	+	0	NA	intron (NM_001371242, intron 1 of 21)	intron (NM_001371242, intron 1 of 21)	17198	NR_134603	105377924		NR_134603	ENSG00000282408	LOC105377924	-	uncharacterized LOC105377924	ncRNA
87249	chr16	69765001	69765450	+	0	NA	intron (NM_001270455, intron 1 of 8)	AluJb|SINE|Alu	2893	NM_001270454	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
203410	chr7	172721	172980	+	0	NA	Intergenic	Intergenic	-2070	NR_134324	105375115		NR_134324	ENSG00000239715	LOC105375115	-	uncharacterized LOC105375115	ncRNA
237875	chrX	130886001	130886200	+	0	NA	5' UTR (NM_001382516, exon 3 of 18)	5' UTR (NM_001382516, exon 3 of 18)	17109	NM_001382518	10495		NM_006375	ENSG00000165675	ENOX2	APK1|COVA1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding
75996	chr15	70679601	70679830	+	0	NA	intron (NM_001008224, intron 9 of 18)	intron (NM_001008224, intron 9 of 18)	22567	NM_001008224	55075		NM_018003	ENSG00000137831	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
213294	chr7	134992401	134993280	+	0	NA	intron (NM_001345852, intron 3 of 9)	intron (NM_001345852, intron 3 of 9)	6332	NM_001345851	340351		NM_178563	ENSG00000146856	AGBL3	CCP3	AGBL carboxypeptidase 3	protein-coding
78802	chr15	99485401	99485900	+	0	NA	Intergenic	Intergenic	-79767	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
22962	chr1	226066001	226066230	+	0	NA	intron (NR_002315, intron 3 of 3)	intron (NR_002315, intron 3 of 3)	3388	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
147555	chr20	60055521	60056500	+	0	NA	promoter-TSS (NR_126504)	promoter-TSS (NR_126504)	85	NR_126504	284756		NR_126504	ENSG00000176659	LINC02910	C20orf197	long intergenic non-protein coding RNA 2910	ncRNA
237340	chrX	118528021	118529430	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	32816	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
136470	chr2	177207201	177207400	+	0	NA	Intergenic	Intergenic	5111	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
18610	chr1	165755651	165755750	+	0	NA	intron (NR_045818, intron 3 of 6)	intron (NR_045818, intron 3 of 6)	13168	NM_019026	54499		NM_019026	ENSG00000143183	TMCO1	CFSMR1|HP10122|PCIA3|PNAS-136|TMCC4	transmembrane and coiled-coil domains 1	protein-coding
5309	chr1	25224171	25224330	+	0	NA	intron (NM_015484, intron 6 of 6)	MIR|SINE|MIR	8252	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
74454	chr15	59655621	59656150	+	0	NA	intron (NM_004492, intron 1 of 4)	L2a|LINE|L2	1420	NM_001320929	2958		NM_004492	ENSG00000140307	GTF2A2	HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS	general transcription factor IIA subunit 2	protein-coding
231844	chr9	132745001	132745300	+	0	NA	intron (NM_001371771, intron 11 of 12)	intron (NM_001371771, intron 11 of 12)	74686	NM_012204	9329		NM_012204	ENSG00000125484	GTF3C4	KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA	general transcription factor IIIC subunit 4	protein-coding
74232	chr15	56731901	56732380	+	0	NA	intron (NM_001002844, intron 1 of 5)	MIRc|SINE|MIR	1946	NM_001288589	54816		NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
125266	chr2	10441571	10442380	+	0	NA	intron (NM_001287190, intron 9 of 11)	intron (NM_001287190, intron 9 of 11)	4874	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
229715	chr9	124852821	124855400	+	0	NA	intron (NM_001276375, intron 1 of 8)	intron (NM_001276375, intron 1 of 8)	650	NM_001276375	401551		NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
184550	chr5	102757451	102758430	+	0	NA	intron (NM_001364588, intron 1 of 24)	AluJr|SINE|Alu	2635	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
108843	chr18	79171601	79171800	+	0	NA	intron (NM_198531, intron 7 of 29)	L1MD2|LINE|L1	102306	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
111226	chr19	3505621	3508080	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	539	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
36726	chr11	9210771	9211150	+	0	NA	intron (NM_001243254, intron 1 of 22)	L1MEf|LINE|L1	54366	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
166	chr1	607401	607600	+	0	NA	Intergenic	Intergenic	21509	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
77713	chr15	85694401	85694600	+	0	NA	intron (NM_007200, intron 17 of 36)	MER58B|DNA|hAT-Charlie	64225	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
223025	chr8	143323051	143323550	+	0	NA	intron (NM_052963, intron 7 of 13)	CpG	11580	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
2075	chr1	7935621	7936080	+	0	NA	intron (NM_001561, intron 5 of 7)	MIRb|SINE|MIR	4989	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
57183	chr12	121441821	121442280	+	0	NA	intron (NM_001005366, intron 18 of 22)	intron (NM_001005366, intron 18 of 22)	2302	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
79850	chr16	1460251	1460550	+	0	NA	intron (NM_001114331, intron 5 of 23)	intron (NM_001114331, intron 5 of 23)	14628	NM_001287	1186		NM_001287	ENSG00000103249	CLCN7	CLC-7|CLC7|HOD|OPTA2|OPTB4|PPP1R63	chloride voltage-gated channel 7	protein-coding
85402	chr16	50306621	50307250	+	0	NA	intron (NM_001114, intron 14 of 25)	FLAM_C|SINE|Alu	14319	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
34625	chr10	133289671	133290030	+	0	NA	exon (NM_001256617, exon 10 of 19)	exon (NM_001256617, exon 10 of 19)	-12982	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
68236	chr14	76958601	76959950	+	0	NA	promoter-TSS (NR_133913)	promoter-TSS (NR_133913)	-363	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
142755	chr20	10489771	10489930	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	54545	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
217245	chr8	27285801	27286000	+	0	NA	3' UTR (NM_001304495, exon 4 of 4)	3' UTR (NM_001304495, exon 4 of 4)	25372	NM_001362813	23087		NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
40420	chr11	64167451	64167750	+	0	NA	Intergenic	Intergenic	-1487	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
154882	chr22	37144851	37145030	+	0	NA	intron (NM_001346222, intron 1 of 9)	L2a|LINE|L2	4976	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
148424	chr20	63960271	63961300	+	0	NA	intron (NM_020713, intron 16 of 16)	intron (NM_020713, intron 16 of 16)	-4369	NM_001353477	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
54267	chr12	88111021	88111350	+	0	NA	intron (NM_025114, intron 22 of 53)	intron (NM_025114, intron 22 of 53)	30903	NM_025114	80184		NM_025114	ENSG00000198707	CEP290	3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16	centrosomal protein 290	protein-coding
147632	chr20	62149901	62150730	+	0	NA	intron (NM_198935, intron 1 of 10)	MER117|DNA|hAT-Charlie	6546	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
443	chr1	1118871	1119030	+	0	NA	Intergenic	Intergenic	-2861	NM_001330306	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
53142	chr12	57852171	57853280	+	0	NA	Intergenic	Intergenic	-5996	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
2027	chr1	7669321	7670130	+	0	NA	promoter-TSS (NM_001349623)	promoter-TSS (NM_001349623)	-5	NM_001349614	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
234720	chrX	21656601	21656800	+	0	NA	exon (NM_153270, exon 1 of 1)	exon (NM_153270, exon 1 of 1)	1630	NM_153270	257240		NM_153270	ENSG00000185915	KLHL34	-	kelch like family member 34	protein-coding
166565	chr3	115775971	115776130	+	0	NA	Intergenic	Intergenic	129076	NR_145779	109623450		NR_145779		SNORD155	-	small nucleolar RNA, C/D box 155	snoRNA
108221	chr18	63182971	63183330	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	136619	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
9252	chr1	46196851	46197150	+	0	NA	exon (NM_001243766, exon 3 of 23)	exon (NM_001243766, exon 3 of 23)	499	NM_001290129	55624		NM_017739	ENSG00000085998	POMGNT1	GNTI.2|GnT I.2|LGMD2O|LGMDR15|MEB|MGAT1.2|RP76|gnT-I.2	protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)	protein-coding
122222	chr19	48978871	48980080	+	0	NA	intron (NM_002103, intron 8 of 15)	AluSz|SINE|Alu	13834	NR_027763	2997		NM_002103	ENSG00000104812	GYS1	GSY|GYS	glycogen synthase 1	protein-coding
37355	chr11	14973151	14974050	+	0	NA	Intergenic	CpG	-1249	NM_001033952	796		NM_001741	ENSG00000110680	CALCA	CALC1|CGRP|CGRP-I|CGRP-alpha|CGRP1|CT|KC|PCT	calcitonin related polypeptide alpha	protein-coding
64806	chr14	34969101	34969300	+	0	NA	non-coding (NR_151701, exon 2 of 5)	non-coding (NR_151701, exon 2 of 5)	13366	NR_151701	100506157		NR_151701		SRP54-AS1	-	SRP54 antisense RNA 1	ncRNA
39228	chr11	57649001	57649300	+	0	NA	intron (NM_001363487, intron 1 of 5)	intron (NM_001363487, intron 1 of 5)	762	NM_145008	219539		NM_145008	ENSG00000166793	YPEL4	-	yippee like 4	protein-coding
109931	chr19	1313451	1313750	+	0	NA	Intergenic	Intergenic	27727	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
202673	chr6	158788151	158788250	+	0	NA	intron (NM_003379, intron 2 of 12)	intron (NM_003379, intron 2 of 12)	-23447	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
211274	chr7	102744401	102744800	+	0	NA	intron (NR_146066, intron 1 of 11)	MER52C|LTR|ERV1	4094	NR_146066	100133005		NR_146066		RASA4DP	-	RAS p21 protein activator 4D, pseudogene	pseudo
79418	chr16	688021	689000	+	0	NA	intron (NM_032259, intron 1 of 8)	AluSc8|SINE|Alu	1888	NM_032259	84219		NM_032259	ENSG00000127580	WDR24	C16orf21|JFP7	WD repeat domain 24	protein-coding
196785	chr6	45665771	45666130	+	0	NA	Intergenic	Intergenic	243675	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
125784	chr2	23824721	23825130	+	0	NA	intron (NM_001354107, intron 16 of 28)	intron (NM_001354107, intron 16 of 28)	102198	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
224970	chr9	33074951	33075380	+	0	NA	intron (NM_018225, intron 1 of 11)	AluY|SINE|Alu	1509	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
59375	chr13	24726921	24727230	+	0	NA	Intergenic	Intergenic	-37094	NM_001184993	56163		NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
14560	chr1	144936321	144936580	+	0	NA	intron (NM_001385228, intron 3 of 8)	intron (NM_001385228, intron 3 of 8)	-157846	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
24337	chr1	239549101	239549300	+	0	NA	intron (NM_001375982, intron 3 of 6)	THE1B|LTR|ERVL-MaLR	-79873	NM_000740	1131		NM_000740	ENSG00000133019	CHRM3	EGBRS|HM3|PBS|m3AChR	cholinergic receptor muscarinic 3	protein-coding
226304	chr9	68705651	68705750	+	0	NA	promoter-TSS (NM_001376041)	promoter-TSS (NM_001376041)	-280	NM_001376039	8395		NM_003558	ENSG00000107242	PIP5K1B	MSS4|STM7	phosphatidylinositol-4-phosphate 5-kinase type 1 beta	protein-coding
124018	chr19	55475971	55477800	+	0	NA	intron (NM_033113, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	268	NM_033113	89887		NM_033113	ENSG00000197483	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
216351	chr8	17028471	17029250	+	0	NA	intron (NR_146233, intron 1 of 15)	intron (NR_146233, intron 1 of 15)	1622	NM_001349810	286097		NM_181723	ENSG00000155970	MICU3	EFHA2	mitochondrial calcium uptake family member 3	protein-coding
128958	chr2	64627571	64627730	+	0	NA	Intergenic	Intergenic	20338	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
193675	chr6	31020821	31021080	+	0	NA	intron (NM_001322469, intron 2 of 5)	LTR12C|LTR|ERV1	14998	NM_001198815	100507679		NM_001198815	ENSG00000261272	MUC22	PBMUCL1	mucin 22	protein-coding
73502	chr15	43760721	43761180	+	0	NA	intron (NM_005313, intron 3 of 12)	L1ME4b|LINE|L1	14512	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
12885	chr1	110312471	110313000	+	0	NA	intron (NR_036595, intron 2 of 3)	intron (NR_036595, intron 2 of 3)	26436	NR_036595	440600		NR_036595	ENSG00000227963	RBM15-AS1	AS-RBM15	RBM15 antisense RNA 1	ncRNA
3628	chr1	16379271	16379430	+	0	NA	intron (NR_073500, intron 1 of 1)	AluY|SINE|Alu	12108	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
111077	chr19	3171621	3171900	+	0	NA	Intergenic	Intergenic	-7009	NM_003775	8698		NM_003775	ENSG00000125910	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
127393	chr2	41867551	41867850	+	0	NA	Intergenic	Intergenic	-9855	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
226031	chr9	42534971	42535280	+	0	NA	Intergenic	Intergenic	34224	NR_126050	103908605		NR_126050		FAM88E	-	family with sequence similarity 88 member E	ncRNA
150930	chr21	44248671	44248830	+	0	NA	intron (NM_013369, intron 11 of 11)	intron (NM_013369, intron 11 of 11)	-2063	NR_135514	105372833		NR_135514	ENSG00000232010	DNMT3L-AS1	-	DNMT3L antisense RNA 1	ncRNA
89063	chr16	88452021	88454200	+	0	NA	promoter-TSS (NM_153813)	promoter-TSS (NM_153813)	-170	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
210129	chr7	98209651	98209950	+	0	NA	TTS (NM_014916)	TTS (NM_014916)	-1639	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
18041	chr1	160608701	160608900	+	0	NA	non-coding (NR_104399, exon 6 of 6)	non-coding (NR_104399, exon 6 of 6)	-29284	NM_001184882	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
97550	chr17	44074451	44075980	+	0	NA	intron (NM_138387, intron 4 of 5)	intron (NM_138387, intron 4 of 5)	4304	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
59423	chr13	25306951	25307450	+	0	NA	intron (NM_001008564, intron 1 of 14)	intron (NM_001008564, intron 1 of 14)	5575	NM_001008564	9818		NM_014089	ENSG00000139496	NUP58	NUP45|NUPL1|PRO2463	nucleoporin 58	protein-coding
230432	chr9	128152871	128153280	+	0	NA	intron (NM_005564, intron 5 of 6)	intron (NM_005564, intron 5 of 6)	3622	NM_005564	3934		NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL|p25	lipocalin 2	protein-coding
145858	chr20	45908721	45908980	+	0	NA	intron (NM_001242920, intron 3 of 13)	intron (NM_001242920, intron 3 of 13)	2144	NM_001242921	5360		NM_006227	ENSG00000100979	PLTP	BPIFE|HDLCQ9	phospholipid transfer protein	protein-coding
125683	chr2	20329551	20329850	+	0	NA	intron (NM_001352925, intron 1 of 19)	MER65C|LTR|ERV1	-2314	NM_001282790	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
173847	chr4	22099921	22100180	+	0	NA	Intergenic	Intergenic	-151299	NM_147182	80333		NM_025221	ENSG00000185774	KCNIP4	CALP|KCHIP4	potassium voltage-gated channel interacting protein 4	protein-coding
2112	chr1	8149571	8150150	+	0	NA	Intergenic	AluSz|SINE|Alu	-58812	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
14595	chr1	145230601	145230800	+	0	NA	Intergenic	Intergenic	11499	NM_001164262	728945		NM_001164262	ENSG00000279782	PPIAL4F	-	peptidylprolyl isomerase A like 4F	protein-coding
140931	chr2	237727221	237727680	+	0	NA	intron (NM_001137550, intron 7 of 23)	intron (NM_001137550, intron 7 of 23)	35245	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
235578	chrX	47543501	47543700	+	0	NA	Intergenic	L1MC4|LINE|L1	-17500	NM_001256196	369		NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
128608	chr2	61064921	61066530	+	0	NA	promoter-TSS (NM_032506)	promoter-TSS (NM_032506)	-145	NM_001330432	84542		NM_032506	ENSG00000162929	SANBR	KIAA1841	SANT and BTB domain regulator of CSR	protein-coding
121405	chr19	46959021	46959530	+	0	NA	intron (NM_004491, intron 3 of 6)	AluJb|SINE|Alu	-60562	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
45719	chr11	119092101	119093450	+	0	NA	exon (NM_001024382, exon 12 of 14)	exon (NM_001024382, exon 12 of 14)	2690	NM_002105	3014		NM_002105	ENSG00000188486	H2AX	H2A.X|H2A/X|H2AFX	H2A.X variant histone	protein-coding
41711	chr11	66649371	66649730	+	0	NA	intron (NM_001198844, intron 2 of 2)	intron (NM_001198844, intron 2 of 2)	10847	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
105762	chr18	2779401	2779850	+	0	NA	intron (NM_015295, intron 44 of 47)	intron (NM_015295, intron 44 of 47)	-67381	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
35787	chr11	2171921	2172380	+	0	NA	promoter-TSS (NM_199293)	promoter-TSS (NM_199293)	-335	NM_199292	7054		NM_000360	ENSG00000180176	TH	DYT14|DYT5b|TYH	tyrosine hydroxylase	protein-coding
166472	chr3	114236571	114236730	+	0	NA	exon (NM_007136, exon 1 of 1)	exon (NM_007136, exon 1 of 1)	928	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
202774	chr6	159061951	159063120	+	0	NA	Intergenic	Intergenic	-17383	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
107526	chr18	48408371	48408730	+	0	NA	5' UTR (NM_001371286, exon 2 of 5)	5' UTR (NM_001371286, exon 2 of 5)	833	NM_001371285	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
19907	chr1	184036601	184038130	+	0	NA	5' UTR (NM_001303420, exon 1 of 12)	5' UTR (NM_001303420, exon 1 of 12)	363	NM_015101	23127		NM_015101	ENSG00000198756	COLGALT2	C1orf17|ColGalT 2|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
118374	chr19	35719821	35720330	+	0	NA	exon (NM_014727, exon 3 of 37)	exon (NM_014727, exon 3 of 37)	2072	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
94902	chr17	31582201	31582400	+	0	NA	Intergenic	Intergenic	6889	NR_029856	100126356		NR_029856	ENSG00000283978	MIR365B	MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b	microRNA 365b	ncRNA
21708	chr1	206742501	206743500	+	0	NA	Intergenic	Intergenic	27603	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
210994	chr7	102281601	102281800	+	0	NA	intron (NM_001913, intron 20 of 22)	intron (NM_001913, intron 20 of 22)	-3441	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
56195	chr12	111446451	111446550	+	0	NA	intron (NM_001291424, intron 1 of 6)	intron (NM_001291424, intron 1 of 6)	11638	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
20006	chr1	185291721	185292080	+	0	NA	TTS (NM_001105518)	TTS (NM_001105518)	25343	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
127099	chr2	37625301	37625500	+	0	NA	Intergenic	Intergenic	46242	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
146225	chr20	48800551	48800880	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	27284	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
166104	chr3	110814301	110814730	+	0	NA	Intergenic	Intergenic	255444	NR_045114	100506555		NR_045114		NECTIN3-AS1	PVRL3-AS1	NECTIN3 antisense RNA 1	ncRNA
82126	chr16	14721621	14722080	+	0	NA	intron (NM_001277324, intron 4 of 7)	L1MEg|LINE|L1	10161	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
91346	chr17	4496571	4496730	+	0	NA	Intergenic	MIRc|SINE|MIR	-2231	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
109759	chr19	1119501	1120650	+	0	NA	intron (NM_001100122, intron 8 of 28).2	CpG-12991	12146	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
201321	chr6	144384301	144384630	+	0	NA	intron (NM_007124, intron 1 of 73)	MER1B|DNA|hAT-Charlie	-21190	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
94371	chr17	28923471	28923630	+	0	NA	intron (NM_020889, intron 4 of 8)	AluSx|SINE|Alu	-2725	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
171439	chr3	196280351	196281480	+	0	NA	intron (NM_001312673, intron 1 of 8)	intron (NM_001312673, intron 1 of 8)	6811	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
81522	chr16	9078871	9079550	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-12434	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
98015	chr17	45389021	45389550	+	0	NA	Intergenic	LTR16A|LTR|ERVL	21101	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
212125	chr7	116232571	116232730	+	0	NA	intron (NM_152829, intron 1 of 6)	intron (NM_152829, intron 1 of 6)	9697	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
5332	chr1	25250021	25250630	+	0	NA	intron (NR_135788, intron 1 of 3)	LTR6A|LTR|ERV1	-2806	NR_135143	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
34272	chr10	131897551	131898050	+	0	NA	Intergenic	MER49|LTR|ERV1	-3208	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
60314	chr13	40653401	40655050	+	0	NA	intron (NM_002015, intron 1 of 2)	AluSg7|SINE|Alu	12416	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
216678	chr8	22154601	22155000	+	0	NA	intron (NM_139278, intron 2 of 7)	MamRTE1|LINE|RTE-BovB	2006	NM_139278	203190		NM_139278	ENSG00000168481	LGI3	IDDMDS|LGIL4	leucine rich repeat LGI family member 3	protein-coding
56408	chr12	113286221	113286480	+	0	NA	intron (NM_001143819, intron 19 of 28)	intron (NM_001143819, intron 19 of 28)	-5173	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
89609	chr16	89298521	89298780	+	0	NA	TTS (NR_136339)	TTS (NR_136339)	2522	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
173525	chr4	9763151	9763600	+	0	NA	Intergenic	Intergenic	-18259	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
199834	chr6	127745651	127746150	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	109288	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
220691	chr8	101491951	101492650	+	0	NA	promoter-TSS (NM_001330593)	promoter-TSS (NM_001330593)	-139	NM_024915	79977		NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|PPCD4|TFCP2L3	grainyhead like transcription factor 2	protein-coding
127142	chr2	37673671	37674530	+	0	NA	Intergenic	Intergenic	-1151	NM_001371569	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
56160	chr12	111400451	111400550	+	0	NA	Intergenic	AluJo|SINE|Alu	-5423	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
9984	chr1	55010851	55011150	+	0	NA	3' UTR (NM_057176, exon 4 of 4)	3' UTR (NM_057176, exon 4 of 4)	12067	NM_057176	7809		NM_057176	ENSG00000162399	BSND	BART|DFNB73	barttin CLCNK type accessory subunit beta	protein-coding
222947	chr8	143058571	143058930	+	0	NA	Intergenic	LTR13|LTR|ERVK	18388	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
126752	chr2	30235171	30236750	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	4426	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
155645	chr22	38981751	38982730	+	0	NA	promoter-TSS (NM_001270411)	promoter-TSS (NM_001270411)	-107	NM_004900	9582		NM_004900	ENSG00000179750	APOBEC3B	A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2	apolipoprotein B mRNA editing enzyme catalytic subunit 3B	protein-coding
42952	chr11	73640621	73640880	+	0	NA	Intergenic	Intergenic	-5831	NM_021200	58473		NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding
192290	chr6	20543071	20543430	+	0	NA	intron (NM_017774, intron 2 of 15)	L1MD1|LINE|L1	8793	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
122197	chr19	48952671	48953330	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1860	NM_001291430	581		NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
90002	chr16	89879771	89880130	+	0	NA	intron (NM_014972, intron 1 of 17)	intron (NM_014972, intron 1 of 17)	6358	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
49735	chr12	31636401	31637030	+	0	NA	Intergenic	Intergenic	-10445	NM_001135864	254013		NM_173802	ENSG00000139160	ETFBKMT	C12orf72|ETFB-KMT|METTL20	electron transfer flavoprotein subunit beta lysine methyltransferase	protein-coding
24906	chr10	1051801	1052400	+	0	NA	intron (NM_001317955, intron 2 of 5)	AluSg|SINE|Alu	-2734	NR_134301	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
96973	chr17	42254971	42255430	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	21191	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
93117	chr17	17692771	17693250	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	11552	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
186177	chr5	134199121	134199380	+	0	NA	intron (NR_149151, intron 5 of 6)	intron (NR_149151, intron 5 of 6)	-22217	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
213788	chr7	140876721	140877230	+	0	NA	intron (NM_001374244, intron 1 of 18)	L1MEf|LINE|L1	47293	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
36203	chr11	3424671	3424830	+	0	NA	Intergenic	Intergenic	-32835	NR_044999	10821		NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
156046	chr22	39976751	39976930	+	0	NA	Intergenic	L2c|LINE|L2	-18114	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
1183	chr1	2233571	2233730	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	5331	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
140759	chr2	234498651	234499730	+	0	NA	Intergenic	Intergenic	-2109	NM_001282431	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
21342	chr1	204578851	204579450	+	0	NA	Intergenic	L2a|LINE|L2	62744	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
183119	chr5	74715971	74716150	+	0	NA	intron (NM_000521, intron 8 of 13)	intron (NM_000521, intron 8 of 13)	30827	NM_000521	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
37406	chr11	17244251	17244350	+	0	NA	Intergenic	Intergenic	-32414	NM_001352666	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
227992	chr9	95499401	95499600	+	0	NA	intron (NM_001354919, intron 2 of 4)	G-rich|Low_complexity|Low_complexity	7699	NM_001083607	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
238041	chrX	135344601	135345880	+	0	NA	intron (NM_152695, intron 1 of 4)	intron (NM_152695, intron 1 of 4)	444	NM_152695	203523		NM_152695	ENSG00000173275	ZNF449	ZSCAN19	zinc finger protein 449	protein-coding
57830	chr12	123237751	123238800	+	0	NA	intron (NM_001194995, intron 1 of 2)	intron (NM_001194995, intron 1 of 2)	4531	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
194138	chr6	31977171	31977550	+	0	NA	intron (NM_004197, intron 2 of 6)	AluY|SINE|Alu	-4697	NM_001352000	110384692		NM_001352000		LOC110384692	-	complement C4A (Rodgers blood group)-like	protein-coding
19336	chr1	173714621	173715650	+	0	NA	intron (NM_014458, intron 1 of 11)	intron (NM_014458, intron 1 of 11)	154	NM_014458	27252		NM_014458	ENSG00000076321	KLHL20	KHLHX|KLEIP|KLHLX	kelch like family member 20	protein-coding
4076	chr1	19072271	19072430	+	0	NA	Intergenic	Intergenic	-115674	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
86816	chr16	67864151	67864650	+	0	NA	intron (NM_001322038, intron 2 of 5)	AluSq2|SINE|Alu	-8652	NM_014329	23644		NM_014329	ENSG00000038358	EDC4	GE1|Ge-1|HEDL5|HEDLS|RCD-8|RCD8	enhancer of mRNA decapping 4	protein-coding
167943	chr3	136194221	136195000	+	0	NA	promoter-TSS (NM_001145417)	promoter-TSS (NM_001145417)	-142	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
110144	chr19	1613371	1613630	+	0	NA	intron (NM_001136139, intron 17 of 19)	intron (NM_001136139, intron 17 of 19)	-8038	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
160487	chr3	30614951	30615450	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	8599	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
85432	chr16	50372271	50372430	+	0	NA	Intergenic	Intergenic	-3362	NM_013263	29117		NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4|SMARCI1	bromodomain containing 7	protein-coding
21820	chr1	207326801	207327030	+	0	NA	intron (NM_001300904, intron 5 of 10)	intron (NM_001300904, intron 5 of 10)	5237	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
238525	chrX	153691801	153692000	+	0	NA	intron (NM_005629, intron 3 of 12)	intron (NM_005629, intron 3 of 12)	2389	NM_001142806	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
223325	chr8	143822351	143822450	+	0	NA	intron (NM_001271099, intron 1 of 10)	intron (NM_001271099, intron 1 of 10)	-6627	NM_015356	23513		NM_015356	ENSG00000180900	SCRIB	CRIB1|SCRB1|SCRIB1|Vartul|oSCRIB	scribble planar cell polarity protein	protein-coding
226496	chr9	71767651	71767800	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	788	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
202990	chr6	162727151	162728630	+	0	NA	promoter-TSS (NM_004562)	promoter-TSS (NM_004562)	-80	NM_001080379	135138		NM_152410	ENSG00000112530	PACRG	BUG21|GLUP|HAK005771|PACRG2.1|PARK2CRG|pf12	parkin coregulated	protein-coding
195539	chr6	37430821	37431080	+	0	NA	Intergenic	AluY|SINE|Alu	-2271	NM_015050	23070		NM_015050	ENSG00000137200	CMTR1	FTSJD2|KIAA0082|MTr1|hMTr1	cap methyltransferase 1	protein-coding
205458	chr7	17185771	17185930	+	0	NA	Intergenic	Intergenic	-112802	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
985	chr1	1827221	1827680	+	0	NA	intron (NM_001282539, intron 1 of 10)	intron (NM_001282539, intron 1 of 10)	-47419	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
82929	chr16	21833571	21833730	+	0	NA	TTS (NM_130464).2	TTS (NM_130464).2	-13165	NM_001301064	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
12974	chr1	110894901	110895100	+	0	NA	exon (NM_000560, exon 5 of 8)	exon (NM_000560, exon 5 of 8)	21852	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
13260	chr1	112714701	112716000	+	0	NA	promoter-TSS (NM_005167)	promoter-TSS (NM_005167)	-22	NM_005167	333926		NM_005167	ENSG00000155367	PPM1J	PP2C-zeta|PP2CZ|PP2Czeta|PPP2CZ	protein phosphatase, Mg2+/Mn2+ dependent 1J	protein-coding
215812	chr8	2727501	2728300	+	0	NA	intron (NR_168445, intron 1 of 10)	LTR12C|LTR|ERV1	551	NR_125426	101927815		NR_125423	ENSG00000254319	LINC03021	-	long intergenic non-protein coding RNA 3021	ncRNA
74202	chr15	56006821	56007500	+	0	NA	Intergenic	Intergenic	-13548	NM_001329212	4734		NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	NEDD4 E3 ubiquitin protein ligase	protein-coding
28792	chr10	62082601	62083800	+	0	NA	intron (NM_001244638, intron 5 of 6)	intron (NM_001244638, intron 5 of 6)	33843	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
95485	chr17	36213071	36213830	+	0	NA	TTS (NM_001291468).4	TTS (NM_001291468).4	2387	NR_111970	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
69329	chr14	93332251	93333950	+	0	NA	promoter-TSS (NM_001002860)	promoter-TSS (NM_001002860)	-64	NM_001002860	55727		NM_018167	ENSG00000011114	BTBD7	FUP1	BTB domain containing 7	protein-coding
174927	chr4	49118451	49120030	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	132598	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
96510	chr17	40323701	40324780	+	0	NA	intron (NM_001145301, intron 1 of 8)	intron (NM_001145301, intron 1 of 8)	5995	NM_001145302	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
237040	chrX	103158001	103158230	+	0	NA	Intergenic	Intergenic	-56977	NM_001127688	56271		NM_001080425	ENSG00000102409	BEX4	BEXL1	brain expressed X-linked 4	protein-coding
85254	chr16	48457771	48458930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-72937	NM_003031	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
132858	chr2	110993971	110994700	+	0	NA	intron (NM_001371254, intron 14 of 18)	LTR106_Mam|LTR|LTR	121253	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
13295	chr1	113074571	113074980	+	0	NA	intron (NM_014813, intron 1 of 17)	AluSc|SINE|Alu	1577	NM_014813	9860		NM_014813	ENSG00000198799	LRIG2	LIG-2|LIG2|UFS2	leucine rich repeats and immunoglobulin like domains 2	protein-coding
78832	chr15	99734721	99735100	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-1466	NM_001284422	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
224794	chr9	22208951	22209350	+	0	NA	Intergenic	Intergenic	-199837	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
164642	chr3	66480601	66481900	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	18804	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
192596	chr6	25991951	25993600	+	0	NA	Intergenic	CpG	25012	NM_005325	3024		NM_005325	ENSG00000124610	H1-1	H1.1|H1A|H1F1|HIST1|HIST1H1A	H1.1 linker histone, cluster member	protein-coding
135755	chr2	169576071	169576430	+	0	NA	Intergenic	Intergenic	-2329	NM_001322049	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
190410	chr5	179815751	179816100	+	0	NA	intron (NM_001142298, intron 2 of 8).2	intron (NM_001142298, intron 2 of 8).2	-4980	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
72480	chr15	32593371	32593530	+	0	NA	promoter-TSS (NM_001282494).5	promoter-TSS (NM_001282494).5	-6	NM_001282494	643699		NM_001282494	ENSG00000232653	GOLGA8N	GOLGA8R	golgin A8 family member N	protein-coding
79594	chr16	1045721	1045980	+	0	NA	Intergenic	Intergenic	-26906	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
45551	chr11	118777601	118777800	+	0	NA	intron (NM_004397, intron 4 of 13)	AluSz|SINE|Alu	13248	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
41559	chr11	66322971	66323130	+	0	NA	Intergenic	Intergenic	-6006	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
24109	chr1	235567901	235568100	+	0	NA	intron (NM_001098721, intron 3 of 3)	MER83C|LTR|ERV1	-63548	NM_152490	148789		NM_152490	ENSG00000162885	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
48620	chr12	10373901	10374750	+	0	NA	intron (NR_120430, intron 2 of 3)	intron (NR_120430, intron 2 of 3)	10556	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
173041	chr4	4871201	4871400	+	0	NA	Intergenic	L2a|LINE|L2	11635	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
53567	chr12	67633551	67634050	+	0	NA	Intergenic	Intergenic	-14945	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
66077	chr14	59055551	59055730	+	0	NA	Intergenic	Intergenic	-133027	NM_001270520	23002		NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
36315	chr11	3860571	3861250	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	4848	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
176165	chr4	83266401	83267000	+	0	NA	intron (NM_015697, intron 6 of 6)	intron (NM_015697, intron 6 of 6)	18098	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
156379	chr22	41097771	41098180	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluYk11|SINE|Alu	5383	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
76273	chr15	74094951	74095450	+	0	NA	Intergenic	Intergenic	5006	NR_160652	732265		NR_160652		COMMD4P2	-	COMM domain containing 4 pseudogene 2	pseudo
139832	chr2	230422471	230422980	+	0	NA	intron (NM_001080391, intron 2 of 28)	HAL1|LINE|L1	5969	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
77476	chr15	84516851	84516950	+	0	NA	promoter-TSS (NR_003246)	promoter-TSS (NR_003246)	-53	NR_003246	374650		NM_198079		GOLGA6L5P	GOLGA6L5|GOLGA6L8	golgin A6 family like 5, pseudogene	pseudo
10858	chr1	77974151	77974700	+	0	NA	intron (NR_146539, intron 1 of 22)	AluY|SINE|Alu	4647	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
153317	chr22	24247171	24247850	+	0	NA	Intergenic	Intergenic	-2368	NM_001099782	2687		NM_004121	ENSG00000099998	GGT5	GGL|GGT 5|GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
113397	chr19	9312071	9312550	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2472	NM_198535	374879		NM_198535	ENSG00000196110	ZNF699	DEGCAGS|hang	zinc finger protein 699	protein-coding
224693	chr9	21336351	21336900	+	0	NA	Intergenic	Intergenic	-1221	NM_018847	55958		NM_018847	ENSG00000198642	KLHL9	-	kelch like family member 9	protein-coding
189070	chr5	170270591	170271450	+	0	NA	intron (NM_005565, intron 6 of 20)	MIRb|SINE|MIR	26757	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
131823	chr2	98634071	98635030	+	0	NA	intron (NM_001160154, intron 11 of 12)	intron (NM_001160154, intron 11 of 12)	25961	NM_001330353	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
98796	chr17	48239701	48239900	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-54547	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
28981	chr10	63258071	63259050	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	10663	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
208824	chr7	73667501	73668680	+	0	NA	exon (NM_001077621, exon 1 of 4)	exon (NM_001077621, exon 1 of 4)	259	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
87391	chr16	70476201	70476580	+	0	NA	intron (NM_145059, intron 20 of 23)	intron (NM_145059, intron 20 of 23)	21795	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
202646	chr6	158768301	158768850	+	0	NA	intron (NM_003379, intron 11 of 12)	intron (NM_003379, intron 11 of 12)	-3822	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
67487	chr14	70919721	70920250	+	0	NA	intron (NM_014982, intron 1 of 35)	intron (NM_014982, intron 1 of 35)	12526	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
10151	chr1	60833201	60833500	+	0	NA	Intergenic	Intergenic	-7766	NR_110628	101926964		NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA
111871	chr19	4647151	4647850	+	0	NA	intron (NM_001167942, intron 1 of 1)	AluSx1|SINE|Alu	7483	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
102140	chr17	75089001	75089400	+	0	NA	5' UTR (NM_001271765, exon 2 of 7)	5' UTR (NM_001271765, exon 2 of 7)	1246	NM_004695	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
76086	chr15	72486171	72486350	+	0	NA	intron (NM_005744, intron 1 of 13)	Tigger7|DNA|TcMar-Tigger	11930	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
52271	chr12	54505571	54505730	+	0	NA	intron (NM_001184976, intron 3 of 30)	L1ME1|LINE|L1	6872	NM_001184976	3071		NM_005337	ENSG00000123338	NCKAP1L	HEM1|IMD72	NCK associated protein 1 like	protein-coding
226837	chr9	77908971	77910000	+	0	NA	intron (NM_002072, intron 2 of 6)	intron (NM_002072, intron 2 of 6)	122326	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
43003	chr11	73973881	73974580	+	0	NA	TTS (NM_001381943)	TTS (NM_001381943)	8613	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
43669	chr11	85758651	85759100	+	0	NA	promoter-TSS (NM_001162953)	promoter-TSS (NM_001162953)	-806	NM_001162953	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
5713	chr1	26389551	26390050	+	0	NA	Intergenic	Intergenic	-17006	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
34887	chr11	374421	375630	+	0	NA	intron (NM_178537, intron 8 of 19)	intron (NM_178537, intron 8 of 19)	5526	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
92678	chr17	12053601	12053880	+	0	NA	intron (NM_001281435, intron 2 of 11)	intron (NM_001281435, intron 2 of 11)	-28159	NR_030613	100126313		NR_030613	ENSG00000266297	MIR744	MIRN744|hsa-mir-744|mir-744	microRNA 744	ncRNA
44819	chr11	113877201	113878200	+	0	NA	Intergenic	Intergenic	-2128	NM_001346252	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
51657	chr12	53048501	53048700	+	0	NA	promoter-TSS (NM_015319)	promoter-TSS (NM_015319)	-349	NM_015319	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
156073	chr22	40036621	40037130	+	0	NA	3' UTR (NM_138435, exon 5 of 5)	3' UTR (NM_138435, exon 5 of 5)	7655	NR_163486	114841040		NR_163486	ENSG00000261202	TNRC6B-DT	-	TNRC6B divergent transcript	ncRNA
234179	chrX	11769971	11770730	+	0	NA	intron (NM_078629, intron 10 of 12)	intron (NM_078629, intron 10 of 12)	10703	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
104177	chr17	80421001	80421980	+	0	NA	intron (NR_148042, intron 2 of 7)	intron (NR_148042, intron 2 of 7)	2072	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
192568	chr6	25602401	25602700	+	0	NA	intron (NM_001173977, intron 33 of 36)	intron (NM_001173977, intron 33 of 36)	-49665	NM_006998	10590		NM_006998	ENSG00000079689	SCGN	CALBL|DJ501N12.8|SECRET|SEGN|setagin	secretagogin, EF-hand calcium binding protein	protein-coding
87856	chr16	77171771	77172150	+	0	NA	Intergenic	Intergenic	-19230	NM_014940	22879		NM_014940	ENSG00000103111	MON1B	HSRG1|SAND2|SRG1	MON1 homolog B, secretory trafficking associated	protein-coding
68881	chr14	91326771	91326950	+	0	NA	intron (NM_001080414, intron 10 of 29)	intron (NM_001080414, intron 10 of 29)	-72980	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
214448	chr7	150060501	150060900	+	0	NA	intron (NM_001351028, intron 6 of 9)	intron (NM_001351028, intron 6 of 9)	-12985	NR_147022	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
162788	chr3	49097771	49098100	+	0	NA	intron (NM_001272073, intron 23 of 23)	MIRb|SINE|MIR	1979	NR_106950	102465536		NR_106950	ENSG00000284488	MIR6890	hsa-mir-6890	microRNA 6890	ncRNA
16242	chr1	153953171	153953530	+	0	NA	exon (NM_181715, exon 6 of 14)	exon (NM_181715, exon 6 of 14)	5262	NM_181715	200186		NM_181715	ENSG00000160741	CRTC2	TORC-2|TORC2	CREB regulated transcription coactivator 2	protein-coding
62045	chr13	91312951	91313680	+	0	NA	Intergenic	Intergenic	-34505	NR_027349	407975		NM_213723	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA
199307	chr6	112086801	112088010	+	0	NA	promoter-TSS (NM_016262)	promoter-TSS (NM_016262)	77	NM_016262	51175		NM_016262	ENSG00000074935	TUBE1	TUBE|dJ142L7.2	tubulin epsilon 1	protein-coding
179950	chr5	778801	779630	+	0	NA	intron (NR_147095, intron 1 of 16)	MLT1C|LTR|ERVL-MaLR	5514	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
180182	chr5	1481151	1481650	+	0	NA	intron (NM_024830, intron 6 of 13)	intron (NM_024830, intron 6 of 13)	29456	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
153084	chr22	23385651	23386350	+	0	NA	Intergenic	Intergenic	-3874	NR_037839	649264		NR_037839		CES5AP1	-	carboxylesterase 5A pseudogene 1	pseudo
144933	chr20	37012221	37012480	+	0	NA	intron (NM_183404, intron 19 of 20)	SVA_D|Retroposon|SVA	-60642	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
167976	chr3	136716651	136717180	+	0	NA	intron (NM_005862, intron 1 of 33)	MIRc|SINE|MIR	35463	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
68188	chr14	76564751	76564850	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	188663	NM_001379180	2103		NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR beta-2|ERR2|ERRb|ERRbeta2|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
48571	chr12	10287121	10287380	+	0	NA	intron (NM_001351060, intron 2 of 8)	intron (NM_001351060, intron 2 of 8)	-17196	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
218026	chr8	38758521	38758850	+	0	NA	intron (NM_001352804, intron 1 of 10)	AluSx|SINE|Alu	1410	NM_001352790	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
32597	chr10	103554851	103555550	+	0	NA	intron (NM_004210, intron 1 of 5)	(GTGCTGC)n|Simple_repeat|Simple_repeat	-37758	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
75397	chr15	65759001	65759200	+	0	NA	intron (NM_001376920, intron 1 of 30)	UCON46|Unknown|Unknown	33193	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
11130	chr1	86515751	86515850	+	0	NA	Intergenic	Intergenic	-31278	NM_012128	22802		NM_012128	ENSG00000016602	CLCA4	CaCC|CaCC2	chloride channel accessory 4	protein-coding
179600	chr4	185430571	185430930	+	0	NA	intron (NM_001346007, intron 1 of 4)	AluJo|SINE|Alu	1416	NM_001346007	441054		NM_001114357	ENSG00000205129	CFAP96	C4orf47	cilia and flagella associated protein 96	protein-coding
143204	chr20	24953561	24954370	+	0	NA	intron (NM_003650, intron 1 of 3)	intron (NM_003650, intron 1 of 3)	4696	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
226468	chr9	71739621	71739880	+	0	NA	intron (NM_013390, intron 5 of 23)	MER30|DNA|hAT-Charlie	28763	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
65706	chr14	52790071	52790230	+	0	NA	intron (NM_198066, intron 1 of 5)	intron (NM_198066, intron 1 of 5)	1457	NM_198066	64841		NM_198066	ENSG00000100522	GNPNAT1	GNA1|GNPNAT|Gpnat1|RHZDAN	glucosamine-phosphate N-acetyltransferase 1	protein-coding
238847	chrX	154472701	154473100	+	0	NA	3' UTR (NM_017514, exon 33 of 33)	3' UTR (NM_017514, exon 33 of 33)	6357	NM_006014	8270		NM_006014	ENSG00000196976	LAGE3	CVG5|DXS9879E|DXS9951E|ESO3|GAMOS2|ITBA2|Pcc1	L antigen family member 3	protein-coding
68723	chr14	90814671	90815280	+	0	NA	intron (NM_001010854, intron 1 of 19)	intron (NM_001010854, intron 1 of 19)	1442	NM_001320421	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
108849	chr18	79202501	79202700	+	0	NA	intron (NM_198531, intron 9 of 29)	intron (NM_198531, intron 9 of 29)	133206	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
33572	chr10	119468751	119469200	+	0	NA	Intergenic	Intergenic	67558	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
12627	chr1	109115721	109116180	+	0	NA	intron (NM_001284352, intron 1 of 20)	intron (NM_001284352, intron 1 of 20)	1835	NM_001267048	57535		NM_020775	ENSG00000116299	ELAPOR1	EIG121|KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein-coding
5686	chr1	26357871	26358030	+	0	NA	Intergenic	AluSz|SINE|Alu	-3820	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
99140	chr17	49324501	49324700	+	0	NA	intron (NR_135579, intron 1 of 7)	AluSx|SINE|Alu	-36146	NR_106745	102465137		NR_106745	ENSG00000273500	MIR6129	hsa-mir-6129	microRNA 6129	ncRNA
47193	chr12	810421	811280	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	57927	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
18229	chr1	161036301	161036500	+	0	NA	Intergenic	Intergenic	2564	NM_001113207	100131187		NM_001113205	ENSG00000215845	TSTD1	KAT|TST	thiosulfate sulfurtransferase like domain containing 1	protein-coding
163125	chr3	50130121	50130930	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-24533	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
88274	chr16	83215471	83215700	+	0	NA	intron (NM_001220490, intron 3 of 12)	intron (NM_001220490, intron 3 of 12)	-225287	NR_110937	101928417		NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
165885	chr3	106197521	106197780	+	0	NA	Intergenic	L2c|LINE|L2	-328249	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
61920	chr13	77779401	77780080	+	0	NA	Intergenic	Intergenic	38521	NM_144595	122060		NM_144595	ENSG00000139737	SLAIN1	C13orf32	SLAIN motif family member 1	protein-coding
176504	chr4	94304571	94304730	+	0	NA	intron (NM_014485, intron 4 of 5)	intron (NM_014485, intron 4 of 5)	38186	NM_014485	27306		NM_014485	ENSG00000163106	HPGDS	GSTS|GSTS1|GSTS1-1|PGD2|PGDS	hematopoietic prostaglandin D synthase	protein-coding
183360	chr5	77129471	77129630	+	0	NA	intron (NR_024398, intron 3 of 3)	intron (NR_024398, intron 3 of 3)	-42265	NM_032367	84327		NM_032367	ENSG00000132846	ZBED3	-	zinc finger BED-type containing 3	protein-coding
157424	chr22	45161221	45162230	+	0	NA	intron (NR_038956, intron 1 of 2)	AluSx|SINE|Alu	2056	NR_038956	100506714		NR_038956	ENSG00000226328	NUP50-DT	NUP50-AS1	NUP50 divergent transcript	ncRNA
158632	chr3	4976951	4977700	+	0	NA	intron (NR_125915, intron 1 of 3)	intron (NR_125915, intron 1 of 3)	-2112	NM_003670	8553		NM_003670	ENSG00000134107	BHLHE40	BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14	basic helix-loop-helix family member e40	protein-coding
107220	chr18	36188401	36188800	+	0	NA	intron (NM_017947, intron 1 of 14)	intron (NM_017947, intron 1 of 14)	1103	NM_017947	55034		NM_017947	ENSG00000075643	MOCOS	HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding
92367	chr17	8208821	8209430	+	0	NA	intron (NM_001313952, intron 1 of 7)	AluSx1|SINE|Alu	1100	NR_132731	9212		NM_004217	ENSG00000178999	AURKB	AIK2|AIM-1|AIM1|ARK-2|ARK2|AurB|IPL1|PPP1R48|STK-1|STK12|STK5|aurkb-sv1|aurkb-sv2	aurora kinase B	protein-coding
210770	chr7	100697251	100697550	+	0	NA	Intergenic	Intergenic	-3150	NM_001375763	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
4308	chr1	20233471	20233700	+	0	NA	Intergenic	MIRb|SINE|MIR	-9510	NR_147205	105376827		NR_147205	ENSG00000228105	LINC01757	-	long intergenic non-protein coding RNA 1757	ncRNA
103401	chr17	78175101	78175780	+	0	NA	intron (NM_001363848, intron 5 of 5)	intron (NM_001363848, intron 5 of 5)	6859	NM_004710	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
92169	chr17	7709221	7709880	+	0	NA	exon (NM_001406, exon 5 of 5)	exon (NM_001406, exon 5 of 5)	4348	NM_001406	1949		NM_001406	ENSG00000108947	EFNB3	EFL6|EPLG8|LERK8	ephrin B3	protein-coding
43178	chr11	75397071	75397230	+	0	NA	Intergenic	Intergenic	-2341	NM_001260507	6188		NM_001005	ENSG00000149273	RPS3	S3|uS3	ribosomal protein S3	protein-coding
88754	chr16	86565621	86566080	+	0	NA	promoter-TSS (NM_005251)	promoter-TSS (NM_005251)	-979	NM_005251	2303		NM_005251	ENSG00000176692	FOXC2	FKHL14|LD|MFH-1|MFH1	forkhead box C2	protein-coding
63581	chr14	20468971	20470700	+	0	NA	intron (NM_000270, intron 1 of 5)	intron (NM_000270, intron 1 of 5)	429	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
202679	chr6	158793221	158794180	+	0	NA	intron (NM_003379, intron 1 of 12)	MER20B|DNA|hAT-Charlie	-24279	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
132677	chr2	108783051	108783750	+	0	NA	intron (NM_006267, intron 28 of 28)	intron (NM_006267, intron 28 of 28)	-3350	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
51912	chr12	53678201	53679400	+	0	NA	Intergenic	LFSINE_Vert|SINE|tRNA	-2470	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
19306	chr1	173161771	173161930	+	0	NA	Intergenic	Intergenic	43682	NM_001297562	7292		NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	TNF superfamily member 4	protein-coding
25292	chr10	6174451	6174780	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-22353	NR_039698	100628560		NR_039698	ENSG00000283634	MIR3155B	hsa-mir-3155b	microRNA 3155b	ncRNA
218277	chr8	42276021	42276480	+	0	NA	intron (NM_001242778, intron 2 of 20)	L1MA5|LINE|L1	4948	NM_001242778	3551		NM_001556	ENSG00000104365	IKBKB	IKK-2|IKK-beta|IKK2|IKKB|IMD15|IMD15A|IMD15B|NFKBIKB	inhibitor of nuclear factor kappa B kinase subunit beta	protein-coding
80085	chr16	2000051	2000530	+	0	NA	intron (NM_178167, intron 10 of 13)	intron (NM_178167, intron 10 of 13)	9531	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
57800	chr12	123111521	123111980	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	-6234	NM_001384660	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
238341	chrX	149545801	149546600	+	0	NA	intron (NM_178124, intron 4 of 4)	intron (NM_178124, intron 4 of 4)	1680	NM_001171909	91966		NM_178124	ENSG00000197620	EOLA1	CXorf40|CXorf40A	endothelium and lymphocyte associated ASCH domain 1	protein-coding
223541	chr8	144143621	144144080	+	0	NA	Intergenic	Intergenic	-4166	NM_032450	727957		NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat like repeat family member 1	protein-coding
72266	chr15	30629301	30629500	+	0	NA	intron (NM_001039841, intron 1 of 6)	AluY|SINE|Alu	3252	NR_148423	89839		NM_001039841	ENSG00000285077	ARHGAP11B	B'-T|FAM7B1|GAP (1-8)	Rho GTPase activating protein 11B	protein-coding
37436	chr11	17498251	17498350	+	0	NA	intron (NM_153676, intron 23 of 26)	intron (NM_153676, intron 23 of 26)	-21455	NM_000352	6833		NM_000352	ENSG00000006071	ABCC8	ABC36|HHF1|HI|HRINS|MRP8|PHHI|PNDM3|SUR|SUR1|SUR1delta2|TNDM2	ATP binding cassette subfamily C member 8	protein-coding
158555	chr3	4466651	4467730	+	0	NA	promoter-TSS (NM_001164674)	promoter-TSS (NM_001164674)	79	NM_182760	285362		NM_182760	ENSG00000144455	SUMF1	AAPA3037|FGE|UNQ3037	sulfatase modifying factor 1	protein-coding
1180	chr1	2228601	2230300	+	0	NA	exon (NM_003036, exon 1 of 7)	exon (NM_003036, exon 1 of 7)	1131	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
156346	chr22	40818271	40820050	+	0	NA	intron (NR_104235, intron 1 of 10)	CpG	186	NM_006358	10478		NM_006358	ENSG00000100372	SLC25A17	PMP34	solute carrier family 25 member 17	protein-coding
36233	chr11	3655521	3655980	+	0	NA	intron (NM_004314, intron 1 of 4)	MLT1O|LTR|ERVL-MaLR	10622	NM_004314	417		NM_004314	ENSG00000129744	ART1	ART2|ARTC1|CD296|RT6	ADP-ribosyltransferase 1	protein-coding
224288	chr9	6425851	6425950	+	0	NA	intron (NR_046386, intron 2 of 16)	L1MC3|LINE|L1	12701	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
43871	chr11	88330371	88330530	+	0	NA	intron (NM_148170, intron 2 of 3)	AluSx|SINE|Alu	7286	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
49705	chr12	31086251	31086350	+	0	NA	intron (NM_004399, intron 5 of 25)	L2c|LINE|L2	12440	NM_001257145	1663		NM_004399	ENSG00000013573	DDX11	CHL1|CHLR1|KRG2|WABS	DEAD/H-box helicase 11	protein-coding
24936	chr10	1209301	1209700	+	0	NA	intron (NM_018702, intron 7 of 9)	intron (NM_018702, intron 7 of 9)	49732	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
141427	chr2	240995571	240995930	+	0	NA	Intergenic	Intergenic	-2868	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
57461	chr12	121992121	121992550	+	0	NA	intron (NM_144668, intron 19 of 21)	intron (NM_144668, intron 19 of 21)	-29549	NM_020993	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
199665	chr6	122459051	122459500	+	0	NA	intron (NM_020755, intron 1 of 9)	HAL1b|LINE|L1	12532	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
125717	chr2	20454671	20454830	+	0	NA	Intergenic	AluJb|SINE|Alu	7676	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
90032	chr16	89901521	89901930	+	0	NA	intron (NM_014972, intron 12 of 17)	AluY|SINE|Alu	-17137	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
87021	chr16	68262521	68262780	+	0	NA	Intergenic	AluJo|SINE|Alu	-1876	NM_003983	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
25561	chr10	7525321	7525750	+	0	NA	Intergenic	Intergenic	94138	NM_032817	80760		NM_030569	ENSG00000123243	ITIH5	ITI-HC5|PP14776	inter-alpha-trypsin inhibitor heavy chain 5	protein-coding
71191	chr14	105058001	105058200	+	0	NA	intron (NM_001278694, intron 1 of 4)	AluJr|SINE|Alu	7330	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
75199	chr15	64823551	64824420	+	0	NA	exon (NM_025049, exon 2 of 13)	exon (NM_025049, exon 2 of 13)	1662	NM_001286496	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
21569	chr1	206464571	206465300	+	0	NA	TTS (NM_001377444)	TTS (NM_001377444)	-5541	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
125689	chr2	20338821	20339080	+	0	NA	intron (NM_001352925, intron 1 of 19)	intron (NM_001352925, intron 1 of 19)	-11564	NM_001282790	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
38872	chr11	47350001	47350400	+	0	NA	intron (NM_000256, intron 3 of 33)	AluYm1|SINE|Alu	2502	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
13486	chr1	114716151	114717250	+	0	NA	promoter-TSS (NM_002524)	promoter-TSS (NM_002524)	71	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
134968	chr2	152134721	152134980	+	0	NA	intron (NM_005843, intron 8 of 13)	intron (NM_005843, intron 8 of 13)	-35683	NM_001145798	785		NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
167588	chr3	129557371	129557530	+	0	NA	intron (NM_015103, intron 33 of 35)	intron (NM_015103, intron 33 of 35)	9065	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
199801	chr6	127268471	127268630	+	0	NA	intron (NM_001242852, intron 1 of 4)	intron (NM_001242852, intron 1 of 4)	1686	NM_001242850	81847		NM_030963	ENSG00000118518	RNF146	-	ring finger protein 146	protein-coding
197768	chr6	87472501	87473640	+	0	NA	promoter-TSS (NM_006416)	promoter-TSS (NM_006416)	96	NM_006416	10559		NM_006416	ENSG00000164414	SLC35A1	CDG2F|CMPST|CST|hCST	solute carrier family 35 member A1	protein-coding
56438	chr12	113463201	113463400	+	0	NA	exon (NM_022363, exon 5 of 5)	exon (NM_022363, exon 5 of 5)	8571	NM_022363	64211		NM_022363	ENSG00000089116	LHX5	-	LIM homeobox 5	protein-coding
6807	chr1	30908271	30910030	+	0	NA	promoter-TSS (NM_014654)	promoter-TSS (NM_014654)	-392	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
116732	chr19	18464271	18464430	+	0	NA	intron (NM_006532, intron 4 of 11)	AluJo|SINE|Alu	-26217	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
89639	chr16	89331511	89332700	+	0	NA	intron (NR_045839, intron 2 of 9)	FLAM_C|SINE|Alu	11653	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
84985	chr16	31457871	31458700	+	0	NA	promoter-TSS (NM_001301820)	promoter-TSS (NM_001301820)	-19	NM_001288767	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
95296	chr17	35533201	35534000	+	0	NA	intron (NM_001363830, intron 1 of 4)	L2b|LINE|L2	4261	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
230171	chr9	127778401	127779800	+	0	NA	promoter-TSS (NM_170600)	promoter-TSS (NM_170600)	-434	NM_170600	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
125560	chr2	15941601	15942000	+	0	NA	promoter-TSS (NR_110230)	promoter-TSS (NR_110230)	-115	NR_161162	10408		NR_110230	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	ncRNA
184256	chr5	96703201	96704250	+	0	NA	intron (NM_173060, intron 1 of 28)	intron (NM_173060, intron 1 of 28)	1065	NM_001042443	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
69099	chr14	92280701	92281100	+	0	NA	Intergenic	Intergenic	-41681	NM_153648	123041		NM_153646	ENSG00000140090	SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 member 4	protein-coding
201021	chr6	141483501	141484100	+	0	NA	Intergenic	Intergenic	-649359	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
71898	chr15	22617801	22618000	+	0	NA	promoter-TSS (NR_024074)	promoter-TSS (NR_024074)	-46	NR_024074	283796		NM_173613	ENSG00000291004	GOLGA8IP	GOLGA8I|GOLGA9P	golgin A8 family member I, pseudogene	pseudo
111520	chr19	4010371	4010900	+	0	NA	intron (NM_015897, intron 1 of 10)	MIR3|SINE|MIR	2899	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
21738	chr1	206802001	206802200	+	0	NA	intron (NM_153758, intron 2 of 6)	intron (NM_153758, intron 2 of 6)	-26777	NM_013371	29949		NM_013371	ENSG00000142224	IL19	IL-10C|MDA1|NG.1|ZMDA1	interleukin 19	protein-coding
127399	chr2	41896401	41897000	+	0	NA	Intergenic	Intergenic	19145	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
183736	chr5	81212071	81212430	+	0	NA	intron (NM_006909, intron 22 of 26)	intron (NM_006909, intron 22 of 26)	-21070	NM_001099736	1160		NM_001825	ENSG00000131730	CKMT2	SMTCK	creatine kinase, mitochondrial 2	protein-coding
166131	chr3	111338071	111338330	+	0	NA	Intergenic	Intergenic	-203997	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
20036	chr1	185321251	185321630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4197	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
94932	chr17	32010171	32010330	+	0	NA	intron (NM_001321350, intron 1 of 14)	MER58B|DNA|hAT-Charlie	2867	NM_001321350	114659		NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
118074	chr19	34352671	34353200	+	0	NA	exon (NM_014686, exon 14 of 14)	exon (NM_014686, exon 14 of 14)	-11805	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
210123	chr7	98168321	98168810	+	0	NA	intron (NM_014916, intron 6 of 13)	intron (NM_014916, intron 6 of 13)	-42874	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
19937	chr1	184742821	184743550	+	0	NA	intron (NM_001319960, intron 2 of 20)	intron (NM_001319960, intron 2 of 20)	11673	NM_001319960	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
162294	chr3	47410221	47410630	+	0	NA	exon (NM_015466, exon 20 of 25)	exon (NM_015466, exon 20 of 25)	29404	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
134996	chr2	152729601	152730200	+	0	NA	intron (NM_001371972, intron 2 of 3)	intron (NM_001371972, intron 2 of 3)	10951	NM_001350068	151188		NM_152522	ENSG00000177917	ARL6IP6	AIP-6|AIP6|PFAAP1	ADP ribosylation factor like GTPase 6 interacting protein 6	protein-coding
23659	chr1	231091921	231092180	+	0	NA	Intergenic	Intergenic	-51796	NM_198552	375061		NM_198552	ENSG00000182118	FAM89A	C1orf153	family with sequence similarity 89 member A	protein-coding
179422	chr4	184280321	184281330	+	0	NA	Intergenic	MER101|LTR|ERV1	-62952	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
153811	chr22	29718971	29719130	+	0	NA	promoter-TSS (NM_182527)	promoter-TSS (NM_182527)	-953	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
113891	chr19	10678751	10679650	+	0	NA	intron (NM_153464, intron 7 of 17)	intron (NM_153464, intron 7 of 17)	-22239	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
76753	chr15	76711571	76711730	+	0	NA	intron (NR_148227, intron 17 of 32)	L1PA3|LINE|L1	125003	NR_037464	100500855		NR_037464	ENSG00000266449	MIR3713	-	microRNA 3713	ncRNA
140904	chr2	237691271	237693000	+	0	NA	promoter-TSS (NM_004735)	promoter-TSS (NM_004735)	-29	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
10410	chr1	65255721	65256030	+	0	NA	Intergenic	Intergenic	-8819	NM_001256865	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
938	chr1	1729701	1730030	+	0	NA	3' UTR (NM_182838, exon 6 of 6)	3' UTR (NM_182838, exon 6 of 6)	-5508	NM_001313982	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
197796	chr6	87690121	87690700	+	0	NA	intron (NM_018064, intron 1 of 4)	intron (NM_018064, intron 1 of 4)	11823	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
153536	chr22	26578121	26578600	+	0	NA	intron (NM_001362923, intron 1 of 7)	MER5A|DNA|hAT-Charlie	11772	NM_003595	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
7915	chr1	37482871	37483430	+	0	NA	exon (NM_025079, exon 6 of 6)	exon (NM_025079, exon 6 of 6)	2920	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
46185	chr11	123304851	123305250	+	0	NA	Intergenic	Intergenic	-53372	NM_001367419	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
119228	chr19	39465571	39465930	+	0	NA	intron (NM_001111020, intron 11 of 29)	L2a|LINE|L2	-2472	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
52751	chr12	56647451	56647780	+	0	NA	Intergenic	AluJb|SINE|Alu	-1631	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
111377	chr19	3710301	3710730	+	0	NA	intron (NM_001267560, intron 1 of 20)	intron (NM_001267560, intron 1 of 20)	2131	NM_001267560	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
127093	chr2	37602801	37603180	+	0	NA	Intergenic	L1MEg|LINE|L1	68652	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
131241	chr2	95790221	95790480	+	0	NA	Intergenic	Intergenic	36631	NR_103734	150759		NM_175853		LINC00342	NCRNA00342	long intergenic non-protein coding RNA 342	ncRNA
11883	chr1	93157771	93157930	+	0	NA	intron (NM_001167830, intron 2 of 4)	AluY|SINE|Alu	22563	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
35852	chr11	2317351	2318050	+	0	NA	intron (NM_139022, intron 9 of 9)	intron (NM_139022, intron 9 of 9)	-14560	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
140654	chr2	233853621	233855130	+	0	NA	intron (NM_001282962, intron 1 of 6)	CpG	160	NM_018410	55355		NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
226331	chr9	69175201	69175780	+	0	NA	intron (NM_004817, intron 1 of 22)	intron (NM_004817, intron 1 of 22)	1213	NM_004817	9414		NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|FHCA1|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
118938	chr19	38789071	38789530	+	0	NA	promoter-TSS (NM_001042507)	promoter-TSS (NM_001042507)	100	NM_001042507	653499		NM_001042507	ENSG00000178934	LGALS7B	GAL7|Gal-7|HKL-14|LGALS7|PI7	galectin 7B	protein-coding
50844	chr12	49123201	49123400	+	0	NA	Intergenic	AluY|SINE|Alu	8095	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
216051	chr8	9906471	9907030	+	0	NA	Intergenic	CpG	-3278	NR_029668	406907		NR_029668	ENSG00000284321	MIR124-1	MIR124A|MIR124A1|MIRN124-1|MIRN124A1|mir-124-1	microRNA 124-1	ncRNA
106550	chr18	21610901	21611100	+	0	NA	Intergenic	AluY|SINE|Alu	-1314	NM_001291916	6632		NM_006938	ENSG00000167088	SNRPD1	HsT2456|SMD1|SNRPD|Sm-D1	small nuclear ribonucleoprotein D1 polypeptide	protein-coding
108876	chr18	79392501	79392700	+	0	NA	Intergenic	Intergenic	-3330	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
226004	chr9	41354001	41355700	+	0	NA	Intergenic	GSATII|Satellite|centr	-4012	NR_148348	107984035		NR_148348		LOC107984035	-	uncharacterized LOC107984035	ncRNA
143810	chr20	32470051	32470750	+	0	NA	intron (NM_080616, intron 2 of 7)	L2b|LINE|L2	13090	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
124318	chr19	58096321	58096730	+	0	NA	intron (NM_001145542, intron 1 of 6)	intron (NM_001145542, intron 1 of 6)	1706	NM_001145543	65982		NM_023926	ENSG00000121413	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
109753	chr19	1115521	1115980	+	0	NA	intron (NM_001100122, intron 14 of 28).2	intron (NM_001100122, intron 14 of 28).2	11100	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
73532	chr15	43821101	43821500	+	0	NA	intron (NM_005926, intron 1 of 8)	L1M5|LINE|L1	3390	NM_005926	4236		NM_005926	ENSG00000140259	MFAP1	AMP	microfibril associated protein 1	protein-coding
6505	chr1	28513501	28513830	+	0	NA	intron (NM_001048199, intron 3 of 11)	AluJo|SINE|Alu	-4561	NM_001048195	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
24307	chr1	236792571	236792730	+	0	NA	Intergenic	AluSz|SINE|Alu	-2631	NM_001291939	4548		NM_000254	ENSG00000116984	MTR	HMAG|MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
171433	chr3	196274351	196275680	+	0	NA	intron (NM_001312673, intron 1 of 8)	intron (NM_001312673, intron 1 of 8)	12711	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
58867	chr12	133181051	133181800	+	0	NA	promoter-TSS (NM_001165887)	promoter-TSS (NM_001165887)	-70	NM_001165886	10795		NM_003415	ENSG00000090612	ZNF268	HZF3	zinc finger protein 268	protein-coding
182424	chr5	61416271	61416430	+	0	NA	intron (NM_020928, intron 1 of 13)	LTR90B|LTR|LTR	84092	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
44443	chr11	104823751	104824000	+	0	NA	Intergenic	Intergenic	74795	NR_034065	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
109904	chr19	1283751	1283850	+	0	NA	Intergenic	Intergenic	-2073	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
188755	chr5	157575131	157576280	+	0	NA	promoter-TSS (NM_033274)	promoter-TSS (NM_033274)	70	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
200675	chr6	137218471	137220100	+	0	NA	promoter-TSS (NM_000416)	promoter-TSS (NM_000416)	-89	NM_001363527	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
126207	chr2	26785591	26787030	+	0	NA	intron (NM_001042426, intron 1 of 3)	CpG	254	NM_001809	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
64836	chr14	35124201	35125250	+	0	NA	intron (NM_001256678, intron 2 of 6)	intron (NM_001256678, intron 2 of 6)	2173	NM_001256679	9692		NM_014672	ENSG00000100890	PRORP	COXPD54|KIAA0391|MRPP3	protein only RNase P catalytic subunit	protein-coding
69127	chr14	92533721	92533980	+	0	NA	intron (NM_024832, intron 1 of 9)	L1PB1|LINE|L1	20069	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
237454	chrX	119698771	119699130	+	0	NA	Intergenic	L2c|LINE|L2	-5782	NM_145800	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
196100	chr6	42357341	42358350	+	0	NA	intron (NM_033502, intron 3 of 17)	intron (NM_033502, intron 3 of 17)	94206	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
167949	chr3	136282251	136282350	+	0	NA	intron (NM_001178014, intron 6 of 15)	L1M4|LINE|L1	31960	NM_000532	5096		NM_000532	ENSG00000114054	PCCB	-	propionyl-CoA carboxylase subunit beta	protein-coding
97894	chr17	45113221	45113850	+	0	NA	TTS (NR_106842)	TTS (NR_106842)	898	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
91947	chr17	7351101	7353130	+	0	NA	promoter-TSS (NM_001363642)	promoter-TSS (NM_001363642)	-47	NM_001363642	147040		NM_001002914	ENSG00000213859	KCTD11	C17orf36|KCASH1|REN|REN/KCTD11	potassium channel tetramerization domain containing 11	protein-coding
85774	chr16	56934351	56935300	+	0	NA	intron (NM_014685, intron 1 of 7)	AluSx|SINE|Alu	2683	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
109654	chr19	1009121	1009800	+	0	NA	TTS (NM_001033026)	TTS (NM_001033026)	9041	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
11721	chr1	91879271	91879630	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	6701	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
15729	chr1	151055221	151055600	+	0	NA	intron (NM_020239, intron 2 of 4)	intron (NM_020239, intron 2 of 4)	4212	NM_020239	56882		NM_020239	ENSG00000197622	CDC42SE1	SCIP1|SPEC1	CDC42 small effector 1	protein-coding
169830	chr3	177147821	177148100	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	48518	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
234146	chrX	10098051	10099280	+	0	NA	intron (NM_015691, intron 8 of 22)	intron (NM_015691, intron 8 of 22)	-58280	NM_001256944	1183		NM_001830	ENSG00000073464	CLCN4	CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC	chloride voltage-gated channel 4	protein-coding
68206	chr14	76870171	76870330	+	0	NA	TTS (NM_194287)	TTS (NM_194287)	43842	NR_169572	145497		NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
140753	chr2	234488571	234489660	+	0	NA	Intergenic	MIRc|SINE|MIR	7934	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
19455	chr1	174874321	174874680	+	0	NA	promoter-TSS (NM_001366457)	promoter-TSS (NM_001366457)	81	NM_001366457	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
239202	chrY	12916851	12916950	+	0	NA	intron (NR_136720, intron 12 of 14)	intron (NR_136720, intron 12 of 14)	11195	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
134640	chr2	144433401	144433800	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-86014	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
75027	chr15	64097951	64099150	+	0	NA	intron (NM_001242933, intron 1 of 14)	AluSz6|SINE|Alu	2568	NM_003099	6642		NM_003099	ENSG00000028528	SNX1	HsT17379|VPS5	sorting nexin 1	protein-coding
85615	chr16	53905151	53905350	+	0	NA	intron (NM_001363894, intron 8 of 9)	MIRb|SINE|MIR	-134143	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
183113	chr5	74648771	74649180	+	0	NA	intron (NM_001292004, intron 1 of 13)	intron (NM_001292004, intron 1 of 13)	-7551	NM_001256575	8507		NM_003633	ENSG00000171617	ENC1	CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10	ectodermal-neural cortex 1	protein-coding
65223	chr14	49821371	49821530	+	0	NA	intron (NM_001301732, intron 16 of 31)	SVA_D|Retroposon|SVA	31338	NM_004713	9147		NM_004713	ENSG00000165525	NEMF	IDDSAPN|NY-CO-1|RQC2|SDCCAG1	nuclear export mediator factor	protein-coding
154252	chr22	31614851	31615500	+	0	NA	exon (NM_014775, exon 28 of 32)	exon (NM_014775, exon 28 of 32)	6356	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
139442	chr2	223761811	223762380	+	0	NA	intron (NM_001039569, intron 4 of 4)	AluSg4|SINE|Alu	75487	NM_001039569	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
16811	chr1	155568221	155568480	+	0	NA	Intergenic	AluSg4|SINE|Alu	-5547	NM_001366177	55870		NM_018489	ENSG00000116539	ASH1L	ASH1|ASH1L1|KMT2H|MRD52	ASH1 like histone lysine methyltransferase	protein-coding
158083	chr22	49981621	49981880	+	0	NA	Intergenic	AluSx1|SINE|Alu	18884	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
135636	chr2	168240971	168241950	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	6135	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
153732	chr22	29305271	29305430	+	0	NA	Intergenic	L2a|LINE|L2	-1673	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
80959	chr16	3873651	3874150	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	6220	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
89331	chr16	88743651	88744480	+	0	NA	non-coding (NR_120387, exon 2 of 3)	non-coding (NR_120387, exon 2 of 3)	1298	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
51858	chr12	53476621	53477900	+	0	NA	intron (NM_031989, intron 14 of 14)	intron (NM_031989, intron 14 of 14)	12792	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
197592	chr6	80133051	80133150	+	0	NA	intron (NM_000056, intron 3 of 10)	intron (NM_000056, intron 3 of 10)	26429	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
235130	chrX	40934101	40934300	+	0	NA	Intergenic	Intergenic	-101004	NR_027761	100132831		NR_027761		TNIP2P1	-	TNIP2 pseudogene 1	pseudo
34688	chr10	133378331	133380250	+	0	NA	promoter-TSS (NM_152911)	promoter-TSS (NM_152911)	28	NM_207128	196743		NM_152911	ENSG00000148832	PAOX	PAO	polyamine oxidase	protein-coding
155008	chr22	37334371	37335500	+	0	NA	Intergenic	CpG	19904	NR_110515	100506271		NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA
92877	chr17	16427371	16427530	+	0	NA	exon (NM_016113, exon 8 of 15)	exon (NM_016113, exon 8 of 15)	-11537	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
5637	chr1	26225071	26225930	+	0	NA	non-coding (NR_110698, exon 1 of 4)	non-coding (NR_110698, exon 1 of 4)	180	NR_110698	101928303		NR_110698	ENSG00000293494	ZPLD2P	-	zona pellucida like domain containing 2, pseudogene	ncRNA
100191	chr17	58711001	58711230	+	0	NA	intron (NM_058216, intron 5 of 8)	intron (NM_058216, intron 5 of 8)	18513	NR_103872	5889		NM_002876	ENSG00000108384	RAD51C	BROVCA3|FANCO|R51H3|RAD51L2	RAD51 paralog C	protein-coding
207642	chr7	45036951	45037680	+	0	NA	intron (NM_001029835, intron 1 of 9)	intron (NM_001029835, intron 1 of 9)	9681	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
62931	chr13	111187921	111188180	+	0	NA	intron (NM_001113513, intron 1 of 19)	MLT1F1|LTR|ERVL-MaLR	1256	NM_001113513	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
77534	chr15	84723771	84723930	+	0	NA	Intergenic	AluJo|SINE|Alu	-7390	NM_001271920	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
73736	chr15	45199801	45202230	+	0	NA	5' UTR (NM_138356, exon 1 of 8)	5' UTR (NM_138356, exon 1 of 8)	101	NM_138356	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
171221	chr3	195769721	195769980	+	0	NA	intron (NM_018406, intron 6 of 24)	MIRb|SINE|MIR	42079	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
23896	chr1	234968451	234968750	+	0	NA	Intergenic	Intergenic	-4601	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
51151	chr12	50134021	50134550	+	0	NA	intron (NR_138535, intron 10 of 11)	AluJr|SINE|Alu	22049	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
39285	chr11	58532571	58532730	+	0	NA	intron (NM_004811, intron 7 of 8)	LTR12C|LTR|ERV1	-24350	NM_001005218	219968		NM_001005218	ENSG00000198283	OR5B21	-	olfactory receptor family 5 subfamily B member 21	protein-coding
55159	chr12	100130721	100130980	+	0	NA	intron (NM_015054, intron 1 of 20)	AluSq2|SINE|Alu	12024	NM_015054	23074		NM_015054	ENSG00000111647	BLTP3B	SHIP164|SHIP164A|UHRF1BP1L	bridge-like lipid transfer protein family member 3B	protein-coding
238868	chrX	154529171	154530900	+	0	NA	Intergenic	Intergenic	-11203	NM_001377312	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
151013	chr21	44456851	44457400	+	0	NA	exon (NM_030891, exon 2 of 2)	exon (NM_030891, exon 2 of 2)	1615	NM_030891	81543		NM_030891	ENSG00000160233	LRRC3	C21orf102|C21orf30|LRRC3DN	leucine rich repeat containing 3	protein-coding
16118	chr1	153644321	153644580	+	0	NA	intron (NM_015607, intron 5 of 5)	intron (NM_015607, intron 5 of 5)	-10089	NM_001024210	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
127377	chr2	39436471	39437580	+	0	NA	promoter-TSS (NR_037875)	promoter-TSS (NR_037875)	260	NM_003618	8491		NM_003618	ENSG00000011566	MAP4K3	GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding
226447	chr9	71696721	71697180	+	0	NA	intron (NM_001135820, intron 19 of 22)	intron (NM_001135820, intron 19 of 22)	71563	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
61422	chr13	51817501	51817700	+	0	NA	intron (NM_001351006, intron 2 of 2)	intron (NM_001351006, intron 2 of 2)	-13437	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
111093	chr19	3191251	3192080	+	0	NA	intron (NM_020170, intron 1 of 14)	MER58A|DNA|hAT-Charlie	5735	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
231401	chr9	130939051	130939450	+	0	NA	promoter-TSS (NM_001145106)	promoter-TSS (NM_001145106)	-3	NM_032843	84929		NM_032843	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
194327	chr6	32845401	32846800	+	0	NA	non-coding (NR_037176, exon 2 of 2)	non-coding (NR_037176, exon 2 of 2)	-1421	NM_004159	5696		NM_004159	ENSG00000204264	PSMB8	ALDD|D6S216|D6S216E|JMP|LMP7|NKJO|PRAAS1|PSMB5i|RING10	proteasome 20S subunit beta 8	protein-coding
186342	chr5	134746421	134746680	+	0	NA	intron (NM_001745, intron 3 of 3)	AluSx|SINE|Alu	8002	NM_001745	819		NM_001745	ENSG00000164615	CAMLG	CAML|CDG2Z|GET2	calcium modulating ligand	protein-coding
202697	chr6	158808831	158809580	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-8774	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
132699	chr2	108987101	108987500	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	1920	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
141902	chr20	855371	855780	+	0	NA	Intergenic	Intergenic	10932	NM_031424	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
169054	chr3	153209951	153210600	+	0	NA	Intergenic	Intergenic	48049	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
180205	chr5	1505671	1505930	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	5056	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
12828	chr1	110032651	110033180	+	0	NA	intron (NM_001270768, intron 1 of 20)	L2c|LINE|L2	1338	NM_001270768	85369		NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
119110	chr19	39335301	39336600	+	0	NA	promoter-TSS (NM_001301008)	promoter-TSS (NM_001301008)	93	NM_001301008	9535		NM_004877	ENSG00000130755	GMFG	GMF-GAMMA	glia maturation factor gamma	protein-coding
47016	chr12	357251	357550	+	0	NA	intron (NM_001042603, intron 5 of 27)	AluJo|SINE|Alu	31920	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
159190	chr3	12840501	12842350	+	0	NA	promoter-TSS (NM_001007074)	promoter-TSS (NM_001007074)	140	NM_000994	6161		NM_000994	ENSG00000144713	RPL32	L32|PP9932|eL32	ribosomal protein L32	protein-coding
218299	chr8	42487851	42488150	+	0	NA	intron (NM_006749, intron 1 of 10)	L1MB3|LINE|L1	13231	NM_001257180	6575		NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC2|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
219616	chr8	80103151	80104400	+	0	NA	intron (NM_001287144, intron 1 of 5)	intron (NM_001287144, intron 1 of 5)	-22944	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
194243	chr6	32460521	32460780	+	0	NA	Intergenic	L2c|LINE|L2	20763	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
84059	chr16	29587101	29587300	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSq2|SINE|Alu	7892	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
200941	chr6	139165971	139166130	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	30970	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
174620	chr4	40300571	40300930	+	0	NA	Intergenic	MIR|SINE|MIR	-6435	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
113346	chr19	8655371	8656050	+	0	NA	intron (NM_001378601, intron 1 of 2)	intron (NM_001378601, intron 1 of 2)	133	NM_001378601	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
141652	chr2	241757671	241758130	+	0	NA	intron (NM_001352824, intron 9 of 9)	AluSq2|SINE|Alu	-18922	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
214467	chr7	150363951	150364250	+	0	NA	Intergenic	Intergenic	-3996	NM_001362746	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
149191	chr21	23862051	23862350	+	0	NA	Intergenic	L2b|LINE|L2	459177	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
93923	chr17	21294821	21295080	+	0	NA	intron (NM_002756, intron 1 of 11)	intron (NM_002756, intron 1 of 11)	6914	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
192547	chr6	25280421	25281350	+	0	NA	intron (NM_001173977, intron 1 of 36)	intron (NM_001173977, intron 1 of 36)	1511	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
148203	chr20	63562771	63563600	+	0	NA	exon (NM_001037335, exon 9 of 20)	exon (NM_001037335, exon 9 of 20)	4569	NM_033405	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
93892	chr17	21240701	21240900	+	0	NA	3' UTR (NM_152914, exon 3 of 3)	3' UTR (NM_152914, exon 3 of 3)	12610	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
190829	chr6	1554251	1554350	+	0	NA	Intergenic	Intergenic	-51231	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
145288	chr20	41032421	41033200	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	3988	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
12121	chr1	100050221	100050480	+	0	NA	intron (NM_033055, intron 2 of 11)	intron (NM_033055, intron 2 of 11)	12255	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
136035	chr2	172480051	172480750	+	0	NA	intron (NM_001316306, intron 11 of 25)	(GGTGGTG)n|Simple_repeat|Simple_repeat	-14378	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
130695	chr2	86558521	86558780	+	0	NA	intron (NM_001198954, intron 3 of 7)	intron (NM_001198954, intron 3 of 7)	4793	NM_001193517	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
194570	chr6	33413101	33413950	+	0	NA	non-coding (NR_027692, exon 6 of 15).2	non-coding (NR_027692, exon 6 of 15).2	2511	NM_002636	5252		NM_002636	ENSG00000112511	PHF1	MTF2L2|PCL1|PHF2|TDRD19C|hPHF1	PHD finger protein 1	protein-coding
182209	chr5	56839471	56839630	+	0	NA	intron (NM_005921, intron 1 of 19)	MER6A|DNA|TcMar-Tigger	24001	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
219134	chr8	66093351	66093450	+	0	NA	intron (NR_146171, intron 6 of 6)	L1ME3D|LINE|L1	-33729	NM_184086	84675		NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
108439	chr18	70068951	70069250	+	0	NA	intron (NM_173630, intron 34 of 48)	L1MA9|LINE|L1	-112301	NM_006566	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
238437	chrX	151330651	151330750	+	0	NA	Intergenic	L1HS|LINE|L1	-65895	NM_001363810	203547		NM_001017980	ENSG00000160131	VMA21	MEAX|XMEA	vacuolar ATPase assembly factor VMA21	protein-coding
33256	chr10	114499501	114500200	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	27063	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
95761	chr17	38658651	38659150	+	0	NA	Intergenic	Intergenic	16057	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
91769	chr17	6914701	6915000	+	0	NA	Intergenic	L1PBb|LINE|L1	21073	NR_120453	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
45237	chr11	117973601	117974050	+	0	NA	Intergenic	Helitron1Na_Mam|RC|Helitron	-12569	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
72982	chr15	40591451	40592130	+	0	NA	Intergenic	Intergenic	-2459	NM_144508	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
91538	chr17	4999251	4999750	+	0	NA	intron (NM_006612, intron 1 of 22)	intron (NM_006612, intron 1 of 22)	1550	NM_006612	10749		NM_006612	ENSG00000129250	KIF1C	LTXS1|SATX2|SAX2|SPAX2|SPG58	kinesin family member 1C	protein-coding
4673	chr1	22560451	22560550	+	0	NA	Intergenic	MIRb|SINE|MIR	-2989	NM_001006943	2046		NM_020526	ENSG00000070886	EPHA8	EEK|EK3|HEK3	EPH receptor A8	protein-coding
122173	chr19	48900901	48901900	+	0	NA	intron (NM_006184, intron 2 of 12)	intron (NM_006184, intron 2 of 12)	1088	NM_006184	4924		NM_006184	ENSG00000104805	NUCB1	CALNUC|NUC	nucleobindin 1	protein-coding
88046	chr16	81447551	81447950	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	2580	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
35918	chr11	2426501	2426700	+	0	NA	Intergenic	Intergenic	-3555	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
186193	chr5	134217651	134218000	+	0	NA	intron (NM_002715, intron 1 of 6)	Tigger3a|DNA|TcMar-Tigger	7729	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
192825	chr6	27101671	27102030	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	30945	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
49133	chr12	14920371	14921200	+	0	NA	intron (NM_001300784, intron 2 of 4)	MIRb|SINE|MIR	8340	NM_001300784	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
74523	chr15	60410271	60410630	+	0	NA	Intergenic	Intergenic	-12464	NM_001136015	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
81315	chr16	4701651	4701980	+	0	NA	intron (NM_133450, intron 9 of 17)	intron (NM_133450, intron 9 of 17)	8097	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
135114	chr2	157411501	157411700	+	0	NA	Intergenic	Intergenic	-31091	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
10657	chr1	70410451	70411530	+	0	NA	promoter-TSS (NM_001190463)	promoter-TSS (NM_001190463)	-228	NM_001190463	1491		NM_001902	ENSG00000116761	CTH	CGL|CSE	cystathionine gamma-lyase	protein-coding
19548	chr1	179023421	179023680	+	0	NA	Intergenic	L2c|LINE|L2	-2254	NM_001324310	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
204976	chr7	6384321	6384930	+	0	NA	intron (NM_018890, intron 1 of 6)	AluJo|SINE|Alu	10098	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
128045	chr2	47570021	47570280	+	0	NA	exon (NM_022055, exon 1 of 2)	exon (NM_022055, exon 1 of 2)	835	NM_022055	56660		NM_022055	ENSG00000184261	KCNK12	K2p12.1|THIK-2|THIK2	potassium two pore domain channel subfamily K member 12	protein-coding
195728	chr6	39219171	39219330	+	0	NA	intron (NM_003740, intron 1 of 4)	intron (NM_003740, intron 1 of 4)	10225	NM_003740	8645		NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding
116811	chr19	18541271	18541780	+	0	NA	intron (NM_012181, intron 2 of 8)	MIRc|SINE|MIR	2048	NM_012181	23770		NM_012181	ENSG00000105701	FKBP8	FKBP38|FKBPr38	FKBP prolyl isomerase 8	protein-coding
158389	chr22	50507021	50508830	+	0	NA	promoter-TSS (NM_001363816)	promoter-TSS (NM_001363816)	-223	NM_001363816	91289		NM_033200	ENSG00000100258	LMF2	TMEM112B|TMEM153	lipase maturation factor 2	protein-coding
156891	chr22	42168971	42169500	+	0	NA	intron (NM_005650, intron 4 of 5)	intron (NM_005650, intron 4 of 5)	-24681	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
23351	chr1	228145271	228145700	+	0	NA	intron (NM_001159391, intron 1 of 7)	intron (NM_001159391, intron 1 of 7)	789	NM_001159391	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
22831	chr1	225423121	225423630	+	0	NA	intron (NM_194442, intron 2 of 13)	intron (NM_194442, intron 2 of 13)	4663	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
63996	chr14	22488701	22488900	+	0	NA	Intergenic	Intergenic	-5841	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
21493	chr1	205732271	205732880	+	0	NA	intron (NM_022731, intron 1 of 6)	AluSc|SINE|Alu	17607	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
72791	chr15	40036151	40036450	+	0	NA	TTS (NM_001013703)	TTS (NM_001013703)	2881	NM_003134	6727		NM_003134	ENSG00000140319	SRP14	ALURBP	signal recognition particle 14	protein-coding
54518	chr12	92110921	92111430	+	0	NA	intron (NR_132341, intron 1 of 4)	(TC)n|Simple_repeat|Simple_repeat	30538	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
96845	chr17	41979501	41979700	+	0	NA	intron (NM_003315, intron 12 of 13)	AluSx1|SINE|Alu	11803	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
179657	chr4	189793071	189793230	+	0	NA	intron (NR_149039, intron 3 of 3)	intron (NR_149039, intron 3 of 3)	-88365	NR_132380	105377617		NR_132380	ENSG00000250666	LINC01596	-	long intergenic non-protein coding RNA 1596	ncRNA
214838	chr7	151274271	151274650	+	0	NA	intron (NM_001003802, intron 2 of 13)	intron (NM_001003802, intron 2 of 13)	2274	NM_001003802	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
203823	chr7	1413921	1415280	+	0	NA	Intergenic	MIRc|SINE|MIR	44870	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
85930	chr16	57128721	57129450	+	0	NA	intron (NM_152727, intron 12 of 15)	L2b|LINE|L2	36502	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
58179	chr12	124991851	124992180	+	0	NA	Intergenic	AluSp|SINE|Alu	-1630	NM_080626	140707		NM_080626	ENSG00000184992	BRI3BP	BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19	BRI3 binding protein	protein-coding
116536	chr19	18199001	18199200	+	0	NA	intron (NM_002866, intron 3 of 4)	FLAM_C|SINE|Alu	4942	NM_002866	5864		NM_002866	ENSG00000105649	RAB3A	-	RAB3A, member RAS oncogene family	protein-coding
22138	chr1	211939821	211940100	+	0	NA	TTS (NR_037667)	TTS (NR_037667)	-95593	NM_001286230	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
205183	chr7	7639771	7641370	+	0	NA	promoter-TSS (NM_001302349)	promoter-TSS (NM_001302349)	-182	NM_001302349	729852		NM_001302348	ENSG00000219545	UMAD1	RPA3-AS1|RPA3OS	UBAP1-MVB12-associated (UMA) domain containing 1	protein-coding
151319	chr21	45557651	45558330	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	5035	NM_001352511	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
111399	chr19	3762441	3763880	+	0	NA	intron (NM_172251, intron 1 of 2)	MIR3|SINE|MIR	478	NM_172251	116541		NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54|mL54	mitochondrial ribosomal protein L54	protein-coding
5919	chr1	26846101	26846300	+	0	NA	intron (NM_032283, intron 2 of 7)	(TA)n|Simple_repeat|Simple_repeat	-16949	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
208108	chr7	57186321	57186400	+	0	NA	Intergenic	Intergenic	-6204	NR_030766	642006		NR_030766		GUSBP10	-	GUSB pseudogene 10	pseudo
54382	chr12	89861121	89861530	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	-86368	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
177459	chr4	113673301	113673850	+	0	NA	intron (NM_172129, intron 2 of 17)	intron (NM_172129, intron 2 of 17)	88163	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
252	chr1	913671	914250	+	0	NA	Intergenic	Intergenic	5732	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
199350	chr6	115737421	115737500	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-93625	NR_134602	105377962		NR_134602	ENSG00000228777	LINC02534	-	long intergenic non-protein coding RNA 2534	ncRNA
183532	chr5	79938371	79938730	+	0	NA	intron (NR_131226, intron 1 of 2)	MLT1H|LTR|ERVL-MaLR	1971	NR_131226	105616916		NR_131226	ENSG00000250888	LINC01455	MDONA|TCONS_00009433	long intergenic non-protein coding RNA 1455	ncRNA
179907	chr5	684371	685580	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	8377	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
146890	chr20	51524451	51524550	+	0	NA	intron (NM_001258292, intron 1 of 9)	MER112|DNA|hAT-Charlie	18219	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
50130	chr12	45543601	45544100	+	0	NA	Intergenic	Intergenic	184071	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
162972	chr3	49691371	49691900	+	0	NA	intron (NR_135218, intron 3 of 38)	MIRb|SINE|MIR	2078	NM_022064	63891		NM_022064	ENSG00000164068	RNF123	FP1477|KPC1	ring finger protein 123	protein-coding
56793	chr12	120199851	120200300	+	0	NA	intron (NM_053275, intron 2 of 7)	intron (NM_053275, intron 2 of 7)	1036	NM_001002	6175		NM_001002	ENSG00000089157	RPLP0	L10E|LP0|P0|PRLP0|RPP0|uL10	ribosomal protein lateral stalk subunit P0	protein-coding
238896	chrX	154600321	154600580	+	0	NA	Intergenic	Intergenic	15296	NM_001327	1485		NM_001327	ENSG00000184033	CTAG1B	CT6.1|CTAG|CTAG1|ESO1|LAGE-2|LAGE2B|NY-ESO-1	cancer/testis antigen 1B	protein-coding
127520	chr2	42310371	42310930	+	0	NA	intron (NM_019063, intron 17 of 22)	intron (NM_019063, intron 17 of 22)	49388	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
107118	chr18	35071551	35072100	+	0	NA	intron (NR_046177, intron 2 of 6)	intron (NR_046177, intron 2 of 6)	30412	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
147383	chr20	58647501	58647850	+	0	NA	Intergenic	MIRb|SINE|MIR	-3578	NR_037945	100534593		NR_037945	ENSG00000254995	STX16-NPEPL1	-	STX16-NPEPL1 readthrough (NMD candidate)	ncRNA
183905	chr5	87383701	87384230	+	0	NA	intron (NM_022650, intron 21 of 24)	intron (NM_022650, intron 21 of 24)	28939	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
67039	chr14	67624551	67624850	+	0	NA	intron (NM_001172, intron 2 of 7)	MSTA|LTR|ERVL-MaLR	4780	NM_001172	384		NM_001172	ENSG00000081181	ARG2	-	arginase 2	protein-coding
14012	chr1	120721521	120722000	+	0	NA	Intergenic	Intergenic	-2179	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
113379	chr19	8834501	8835100	+	0	NA	Intergenic	L1MB7|LINE|L1	-2496	NM_144693	148156		NM_144693	ENSG00000167785	ZNF558	-	zinc finger protein 558	protein-coding
215609	chr7	159144451	159145480	+	0	NA	promoter-TSS (NM_001304522)	promoter-TSS (NM_001304522)	-8	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
203241	chr6	168956651	168957200	+	0	NA	intron (NR_136250, intron 2 of 3)	L1MC3|LINE|L1	7457	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
239185	chrY	12598871	12599230	+	0	NA	Intergenic	Intergenic	-63317	NR_001545	64595		NR_001545	ENSG00000114374	TTTY15	NCRNA00138	testis expressed transcript, Y-linked 15	ncRNA
18905	chr1	168360221	168360850	+	0	NA	Intergenic	Intergenic	-14989	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
104924	chr17	81919521	81919980	+	0	NA	3' UTR (NM_002359, exon 3 of 3)	3' UTR (NM_002359, exon 3 of 3)	-1574	NM_016538	51547		NM_016538	ENSG00000187531	SIRT7	SIR2L7	sirtuin 7	protein-coding
116317	chr19	17803071	17804230	+	0	NA	intron (NM_014256, intron 1 of 2)	intron (NM_014256, intron 1 of 2)	8512	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
59042	chr13	20495001	20495980	+	0	NA	intron (NM_015974, intron 2 of 7)	intron (NM_015974, intron 2 of 7)	30367	NM_015974	51084		NM_015974	ENSG00000165475	CRYL1	GDH|HEL30|gul3DH|lambda-CRY	crystallin lambda 1	protein-coding
156397	chr22	41114521	41114980	+	0	NA	intron (NM_001362843, intron 1 of 29)	intron (NM_001362843, intron 1 of 29)	22158	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
183655	chr5	80268521	80269280	+	0	NA	Intergenic	Intergenic	-12852	NR_126060	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
12730	chr1	109545901	109546930	+	0	NA	TTS (NM_031936)	TTS (NM_031936)	-2200	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
204588	chr7	5298051	5298550	+	0	NA	intron (NM_153247, intron 7 of 10)	intron (NM_153247, intron 7 of 10)	15357	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
122720	chr19	49987051	49988250	+	0	NA	intron (NM_001308420, intron 12 of 12)	intron (NM_001308420, intron 12 of 12)	17986	NM_001348364	400709		NM_001348364	ENSG00000161643	SIGLEC16	SIGLECP16|Siglec-P16	sialic acid binding Ig like lectin 16	protein-coding
234222	chrX	12986421	12986780	+	0	NA	Intergenic	Intergenic	11490	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
58377	chr12	131808551	131809180	+	0	NA	Intergenic	(GGAACAGAA)n|Simple_repeat|Simple_repeat	-19528	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
106886	chr18	24447271	24447430	+	0	NA	intron (NM_018439, intron 8 of 10)	intron (NM_018439, intron 8 of 10)	-13287	NM_001143828	59340		NM_021624	ENSG00000134489	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
215959	chr8	8547601	8547800	+	0	NA	Intergenic	Intergenic	-154237	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
145693	chr20	45013951	45014400	+	0	NA	intron (NM_006282, intron 9 of 10)	AluSz|SINE|Alu	47663	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
59554	chr13	27302871	27303230	+	0	NA	Intergenic	MARNA|DNA|TcMar-Mariner	31873	NM_001331126	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
87699	chr16	74709321	74709850	+	0	NA	Intergenic	Intergenic	-8723	NM_152649	197259		NM_152649	ENSG00000168404	MLKL	hMLKL	mixed lineage kinase domain like pseudokinase	protein-coding
119363	chr19	40120671	40121150	+	0	NA	Intergenic	LTR54|LTR|ERV1	-29967	NM_001142579	284323		NM_001010880	ENSG00000197782	ZNF780A	ZNF780	zinc finger protein 780A	protein-coding
132970	chr2	111478671	111479480	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	16086	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
10912	chr1	83860551	83861150	+	0	NA	promoter-TSS (NR_119374)	promoter-TSS (NR_119374)	146	NR_119375	101927587		NR_119375	ENSG00000233008	LINC01725	-	long intergenic non-protein coding RNA 1725	ncRNA
232018	chr9	133364771	133365330	+	0	NA	intron (NM_001280790, intron 5 of 6)	intron (NM_001280790, intron 5 of 6)	8500	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
223416	chr8	143938301	143940760	+	0	NA	promoter-TSS (NM_201384)	promoter-TSS (NM_201384)	67	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
39496	chr11	61023401	61024630	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	52335	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
188114	chr5	150383471	150383630	+	0	NA	intron (NM_001371623, intron 17 of 26)	intron (NM_001371623, intron 17 of 26)	25853	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
174402	chr4	39351601	39351830	+	0	NA	intron (NM_001204747, intron 1 of 24)	AluSx1|SINE|Alu	14647	NM_002913	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
33776	chr10	122978651	122978950	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1601	NM_001363531	118672		NM_153336	ENSG00000179988	PSTK	C10orf89	phosphoseryl-tRNA kinase	protein-coding
37574	chr11	19116351	19117550	+	0	NA	promoter-TSS (NM_001001483)	promoter-TSS (NM_001001483)	-195	NM_001001483	54503		NM_019028	ENSG00000177054	ZDHHC13	HIP14L|HIP3RP	zinc finger DHHC-type palmitoyltransferase 13	protein-coding
58668	chr12	132533601	132534200	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	28494	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
65502	chr14	51886901	51887680	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	26678	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
115052	chr19	14149371	14150800	+	0	NA	3' UTR (NM_014921, exon 23 of 23)	3' UTR (NM_014921, exon 23 of 23)	12933	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
83163	chr16	23464721	23465030	+	0	NA	3' UTR (NM_015044, exon 17 of 17)	3' UTR (NM_015044, exon 17 of 17)	-11686	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
69621	chr14	97638621	97638980	+	0	NA	intron (NR_033943, intron 3 of 3)	MIRb|SINE|MIR	47858	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
181184	chr5	39102571	39102730	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-28251	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
155464	chr22	38483821	38484580	+	0	NA	TTS (NM_006855)	TTS (NM_006855)	16104	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
145794	chr20	45407601	45407800	+	0	NA	promoter-TSS (NM_001048225)	promoter-TSS (NM_001048225)	-589	NM_001048226	55861		NM_018478	ENSG00000244274	DBNDD2	C20orf35|CK1BP|HSMNP1	dysbindin domain containing 2	protein-coding
105260	chr17	82441671	82442250	+	0	NA	TTS (NM_001193657)	TTS (NM_001193657)	7766	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
5080	chr1	24689401	24689600	+	0	NA	Intergenic	AluSp|SINE|Alu	45921	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
114208	chr19	11436821	11437280	+	0	NA	intron (NM_001001329, intron 3 of 17)	AluY|SINE|Alu	-1268	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
125332	chr2	10808501	10808700	+	0	NA	intron (NM_001282706, intron 2 of 13)	L2|LINE|L2	4185	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
21075	chr1	203308301	203309530	+	0	NA	3' UTR (NM_006763, exon 2 of 2)	3' UTR (NM_006763, exon 2 of 2)	3396	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
137481	chr2	197130221	197131280	+	0	NA	intron (NM_153697, intron 4 of 9)	intron (NM_153697, intron 4 of 9)	-67241	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
216287	chr8	12559521	12559980	+	0	NA	intron (NR_047662, intron 8 of 8)	AluYm1|SINE|Alu	105861	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
57785	chr12	123065351	123065850	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-15784	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
69570	chr14	96962271	96962930	+	0	NA	Intergenic	LTR50|LTR|ERVL	19021	NR_104113	145249		NR_104113		LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
99834	chr17	55264651	55265200	+	0	NA	promoter-TSS (NM_002126)	promoter-TSS (NM_002126)	-35	NM_002126	3131		NM_002126	ENSG00000108924	HLF	-	HLF transcription factor, PAR bZIP family member	protein-coding
143429	chr20	29878021	29878590	+	0	NA	Intergenic	LSAU|Satellite|Satellite	-2079	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
215731	chr8	1778451	1778750	+	0	NA	intron (NM_018941, intron 2 of 2)	intron (NM_018941, intron 2 of 2)	-14016	NR_134303	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
44484	chr11	105046551	105047150	+	0	NA	Intergenic	Intergenic	-1515	NM_001017534	114769		NM_052889	ENSG00000204397	CARD16	COP|COP1|LLID-114769|PSEUDO-ICE	caspase recruitment domain family member 16	protein-coding
77115	chr15	78940421	78940680	+	0	NA	intron (NM_001319137, intron 1 of 12)	AluJb|SINE|Alu	4496	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
194821	chr6	34284721	34285050	+	0	NA	3' UTR (NM_006703, exon 5 of 5)	3' UTR (NM_006703, exon 5 of 5)	-35777	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
142187	chr20	2900121	2900380	+	0	NA	intron (NM_001385311, intron 1 of 20)	FRAM|SINE|Alu	26769	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
119069	chr19	39132551	39132850	+	0	NA	intron (NM_001014834, intron 1 of 7)	intron (NM_001014834, intron 1 of 7)	6914	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
188636	chr5	157221851	157223350	+	0	NA	intron (NM_005546, intron 5 of 16)	intron (NM_005546, intron 5 of 16)	41760	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
49880	chr12	38906571	38907150	+	0	NA	Intergenic	CpG	-1269	NM_153634	144402		NM_153634	ENSG00000139117	CPNE8	-	copine 8	protein-coding
48737	chr12	10715471	10716430	+	0	NA	intron (NM_003651, intron 3 of 9)	intron (NM_003651, intron 3 of 9)	7373	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
98261	chr17	46185151	46185250	+	0	NA	intron (NM_001193465, intron 2 of 15)	L2b|LINE|L2	7582	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
94430	chr17	29142471	29142850	+	0	NA	intron (NM_001346765, intron 2 of 42)	MER5A|DNA|hAT-Charlie	-2271	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
169440	chr3	164703151	164703250	+	0	NA	Intergenic	L1PA3|LINE|L1	128280	NR_126405	104355289		NR_126405	ENSG00000241767	LINC01324	-	long intergenic non-protein coding RNA 1324	ncRNA
197747	chr6	87166471	87166630	+	0	NA	intron (NM_015021, intron 1 of 7)	intron (NM_015021, intron 1 of 7)	10985	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
50721	chr12	48967971	48968330	+	0	NA	exon (NM_003394, exon 4 of 5)	exon (NM_003394, exon 4 of 5)	3585	NM_003394	7480		NM_003394	ENSG00000169884	WNT10B	SHFM6|STHAG8|WNT-12	Wnt family member 10B	protein-coding
38362	chr11	44607701	44608100	+	0	NA	intron (NM_002231, intron 6 of 9)	intron (NM_002231, intron 6 of 9)	42237	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
204949	chr7	6346601	6346800	+	0	NA	intron (NM_001037163, intron 1 of 1)	intron (NM_001037163, intron 1 of 1)	2267	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
134947	chr2	151669701	151670300	+	0	NA	intron (NM_001164508, intron 38 of 181)	L2b|LINE|L2	64476	NM_001271208	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
174174	chr4	36287921	36288800	+	0	NA	intron (NR_165630, intron 2 of 10)	AluSx1|SINE|Alu	6744	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
126250	chr2	27083621	27083880	+	0	NA	exon (NM_007046, exon 4 of 8)	exon (NM_007046, exon 4 of 8)	-3022	NM_006488	3795		NM_000221	ENSG00000138030	KHK	FRUCTU	ketohexokinase	protein-coding
28596	chr10	55225071	55225230	+	0	NA	intron (NM_001354404, intron 2 of 34)	L2a|LINE|L2	-373892	NM_001190478	100463289		NM_001190478		MTRNR2L5	HN5	MT-RNR2 like 5 (pseudogene)	pseudo
141535	chr2	241307001	241307200	+	0	NA	intron (NM_005336, intron 1 of 27)	intron (NM_005336, intron 1 of 27)	-8087	NM_006155	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
157209	chr22	43154801	43155200	+	0	NA	intron (NM_001256530, intron 1 of 3)	intron (NM_001256530, intron 1 of 3)	3065	NM_001256530	706		NM_000714	ENSG00000100300	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|TSPO1|mDRC|pk18	translocator protein	protein-coding
209681	chr7	80172621	80173280	+	0	NA	intron (NM_001256414, intron 1 of 7)	MLT1J|LTR|ERVL-MaLR	37166	NM_001256414	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
196157	chr6	42505151	42505850	+	0	NA	Intergenic	U13_|snRNA|snRNA	-53276	NM_033502	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
55357	chr12	104154221	104154680	+	0	NA	Intergenic	Intergenic	-16240	NM_006166	4801		NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	nuclear transcription factor Y subunit beta	protein-coding
287	chr1	944071	944850	+	0	NA	3' UTR (NM_015658, exon 19 of 19)	3' UTR (NM_015658, exon 19 of 19)	14796	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
192792	chr6	26559251	26559750	+	0	NA	Intergenic	AluY|SINE|Alu	-9824	NR_134611	105374988		NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
139711	chr2	227608601	227609000	+	0	NA	Intergenic	Intergenic	9855	NR_149019	729968		NR_149019		LOC729968	-	spore coat protein SP96	ncRNA
81233	chr16	4575051	4575550	+	0	NA	exon (NM_001145011, exon 5 of 16)	exon (NM_001145011, exon 5 of 16)	18810	NM_001145011	342346		NM_001145011	ENSG00000205832	C16orf96	-	chromosome 16 open reading frame 96	protein-coding
234197	chrX	12919071	12919380	+	0	NA	exon (NM_138636, exon 2 of 2)	exon (NM_138636, exon 2 of 2)	12605	NM_016610	51311		NM_016610	ENSG00000101916	TLR8	CD288|IMD98|TLR-8|hTLR8	toll like receptor 8	protein-coding
43361	chr11	76798551	76799650	+	0	NA	TTS (NM_001318477)	TTS (NM_001318477)	7348	NM_001318477	25987		NM_015516	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding
104199	chr17	80470721	80471330	+	0	NA	exon (NM_002522, exon 5 of 5)	exon (NM_002522, exon 5 of 5)	5582	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
113073	chr19	8252851	8253550	+	0	NA	intron (NM_024552, intron 3 of 11)	intron (NM_024552, intron 3 of 11)	43830	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
150186	chr21	39308901	39309100	+	0	NA	intron (NM_033656, intron 4 of 40)	AluSc|SINE|Alu	4632	NM_033656	54014		NM_018963	ENSG00000185658	BRWD1	C21orf107|CILD51|DCAF19|N143|WDR9|WRD9	bromodomain and WD repeat domain containing 1	protein-coding
219962	chr8	89731201	89731530	+	0	NA	intron (NR_125822, intron 1 of 4)	AluSx1|SINE|Alu	26346	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
51410	chr12	52005251	52005350	+	0	NA	TTS (NR_146770)	TTS (NR_146770)	-1646	NM_181711	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
133021	chr2	111772271	111772500	+	0	NA	exon (NM_022662, exon 47 of 48)	exon (NM_022662, exon 47 of 48)	-1251	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
236509	chrX	71994451	71994750	+	0	NA	intron (NM_001013627, intron 1 of 7)	L1PA15|LINE|L1	-49809	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
106507	chr18	21033851	21034150	+	0	NA	intron (NM_005406, intron 9 of 32)	AluY|SINE|Alu	77813	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
82205	chr16	14986101	14986300	+	0	NA	intron (NM_001285448, intron 2 of 21)	AluSx1|SINE|Alu	11174	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
147089	chr20	53842171	53843550	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	32849	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
1741	chr1	5991471	5994000	+	0	NA	promoter-TSS (NM_001291593)	promoter-TSS (NM_001291593)	59	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
104042	chr17	80135751	80136380	+	0	NA	exon (NM_014740, exon 11 of 12)	exon (NM_014740, exon 11 of 12)	11063	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
116084	chr19	17250221	17250480	+	0	NA	exon (NM_001321417, exon 13 of 13)	exon (NM_001321417, exon 13 of 13)	-5008	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
50883	chr12	49209051	49209350	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-18726	NM_001303114	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
127871	chr2	45845251	45845350	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	193625	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
17997	chr1	160529271	160530100	+	0	NA	Intergenic	L1PA7|LINE|L1	-6430	NM_001184714	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
11844	chr1	92959721	92960800	+	0	NA	intron (NM_001006605, intron 1 of 4)	intron (NM_001006605, intron 1 of 4)	1202	NM_001006605	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
179878	chr5	629971	630130	+	0	NA	intron (NR_164122, intron 4 of 15)	intron (NR_164122, intron 4 of 15)	17710	NM_018140	55722		NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72	protein-coding
98592	chr17	47739351	47740280	+	0	NA	intron (NM_013351, intron 1 of 5)	AluJo|SINE|Alu	6579	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
71697	chr15	20247621	20247880	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-34994	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
225933	chr9	40650751	40652000	+	0	NA	Intergenic	CpG	151394	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
99017	chr17	48832571	48833600	+	0	NA	intron (NM_001261395, intron 1 of 11)	intron (NM_001261395, intron 1 of 11)	2050	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
171843	chr4	702601	702900	+	0	NA	Intergenic	Intergenic	-3082	NM_006315	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
26710	chr10	22658971	22660200	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	54523	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
190938	chr6	2890021	2890330	+	0	NA	exon (NM_004155, exon 7 of 7)	exon (NM_004155, exon 7 of 7)	6187	NR_110841	101927730		NR_110841		SERPINB9-AS1	-	SERPINB9 antisense RNA 1	ncRNA
185099	chr5	119187551	119188160	+	0	NA	intron (NM_001290321, intron 28 of 43)	AluSx|SINE|Alu	33218	NR_049892	100847085		NR_049892	ENSG00000264536	MIR5706	-	microRNA 5706	ncRNA
217400	chr8	28352201	28352400	+	0	NA	intron (NM_018660, intron 6 of 9)	intron (NM_018660, intron 6 of 9)	13653	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
19083	chr1	170664701	170664980	+	0	NA	intron (NM_022716, intron 1 of 3)	CpG	709	NM_006902	5396		NM_006902	ENSG00000116132	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding
140267	chr2	232315171	232317330	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-62501	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
212388	chr7	128068171	128068530	+	0	NA	intron (NM_014390, intron 16 of 23)	intron (NM_014390, intron 16 of 23)	-13511	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
106982	chr18	32024301	32024830	+	0	NA	intron (NM_017831, intron 1 of 5)	AluJo|SINE|Alu	5740	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
195851	chr6	41442771	41443430	+	0	NA	Intergenic	Intergenic	-59344	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
213221	chr7	133313601	133313800	+	0	NA	intron (NM_021807, intron 4 of 17)	intron (NM_021807, intron 4 of 17)	22819	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
114944	chr19	13981121	13981380	+	0	NA	intron (NM_002918, intron 5 of 20)	MIRb|SINE|MIR	25070	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
116805	chr19	18533201	18533700	+	0	NA	intron (NM_012181, intron 6 of 8)	AluSx3|SINE|Alu	10123	NM_012181	23770		NM_012181	ENSG00000105701	FKBP8	FKBP38|FKBPr38	FKBP prolyl isomerase 8	protein-coding
233273	chr9	137300801	137301300	+	0	NA	3' UTR (NM_001004354, exon 1 of 1)	3' UTR (NM_001004354, exon 1 of 1)	1221	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
82865	chr16	21528501	21528700	+	0	NA	Intergenic	AluSc8|SINE|Alu	-8156	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
168140	chr3	138944771	138945880	+	0	NA	3' UTR (NM_023067, exon 1 of 1)	3' UTR (NM_023067, exon 1 of 1)	-1305	NR_121649	103344930		NR_121649	ENSG00000244578	LINC01391	-	long intergenic non-protein coding RNA 1391	ncRNA
84580	chr16	30636971	30637350	+	0	NA	Intergenic	AluSz|SINE|Alu	-13618	NM_001320464	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
106213	chr18	11760901	11761500	+	0	NA	intron (NM_182978, intron 4 of 11)	intron (NM_182978, intron 4 of 11)	9115	NM_001369387	2774		NM_002071	ENSG00000141404	GNAL	DYT25|HG1O	G protein subunit alpha L	protein-coding
209064	chr7	74779651	74780000	+	0	NA	intron (NM_000265, intron 4 of 10)	intron (NM_000265, intron 4 of 10)	5863	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
95786	chr17	38706751	38707930	+	0	NA	intron (NM_005937, intron 2 of 19)	L1MC5|LINE|L1	2067	NM_005937	4302		NM_005937	ENSG00000275023	MLLT6	AF17	MLLT6, PHD finger containing	protein-coding
219898	chr8	85734751	85735100	+	0	NA	Intergenic	MIRc|SINE|MIR	-1373	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
129989	chr2	74026871	74027230	+	0	NA	intron (NM_001366022, intron 2 of 10)	intron (NM_001366022, intron 2 of 10)	24358	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
185142	chr5	119314351	119314650	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	-18675	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
25991	chr10	12022171	12022950	+	0	NA	intron (NM_080599, intron 3 of 21)	intron (NM_080599, intron 3 of 21)	20249	NM_015542	26019		NM_015542	ENSG00000151461	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense mediated mRNA decay	protein-coding
46643	chr11	128690121	128690430	+	0	NA	intron (NM_001271012, intron 1 of 6)	CpG	-3353	NR_135072	101929538		NR_135072	ENSG00000245008	LOC101929538	-	uncharacterized LOC101929538	ncRNA
21999	chr1	209768071	209768900	+	0	NA	promoter-TSS (NM_001287754)	promoter-TSS (NM_001287754)	-80	NM_001287754	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
26170	chr10	14506501	14507580	+	0	NA	Intergenic	L2b|LINE|L2	25674	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
19276	chr1	172726471	172726830	+	0	NA	Intergenic	Intergenic	67547	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
63762	chr14	21247721	21248350	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	21407	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
124641	chr2	1817501	1817780	+	0	NA	intron (NM_001329845, intron 21 of 24)	intron (NM_001329845, intron 21 of 24)	-73125	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
82890	chr16	21605071	21605300	+	0	NA	intron (NM_016025, intron 1 of 4).2	MIRb|SINE|MIR	5608	NM_016025	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
16258	chr1	153973751	153974300	+	0	NA	TTS (NM_006694)	TTS (NM_006694)	3649	NM_006694	10899		NM_006694	ENSG00000143543	JTB	HJTB|HSPC222|PAR|hJT	jumping translocation breakpoint	protein-coding
70873	chr14	103817751	103818050	+	0	NA	intron (NM_015316, intron 1 of 16)	intron (NM_015316, intron 1 of 16)	29675	NM_015316	23368		NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
55219	chr12	101810351	101810650	+	0	NA	intron (NM_024312, intron 1 of 20)	intron (NM_024312, intron 1 of 20)	20459	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
51211	chr12	50532151	50533380	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	27780	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
236284	chrX	66074751	66075280	+	0	NA	Intergenic	Intergenic	-34890	NM_001184830	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
65356	chr14	50396271	50397480	+	0	NA	promoter-TSS (NM_001367065)	promoter-TSS (NM_001367065)	6	NM_001367065	8814		NM_004196	ENSG00000100490	CDKL1	KKIALRE|P42	cyclin dependent kinase like 1	protein-coding
176853	chr4	102606621	102606880	+	0	NA	intron (NM_001382625, intron 18 of 24)	intron (NM_001382625, intron 18 of 24)	-104264	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
34332	chr10	132170901	132171300	+	0	NA	intron (NM_001105521, intron 24 of 24)	intron (NM_001105521, intron 24 of 24)	-15848	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
239269	chrY	13479161	13480800	+	0	NA	TTS (NR_162134)	TTS (NR_162134)	690	NR_047608	7404		NM_007125	ENSG00000183878	UTY	KDM6AL|KDM6C|UTY1	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	protein-coding
109267	chr19	536371	537280	+	0	NA	intron (NM_004359, intron 3 of 4)	intron (NM_004359, intron 3 of 4)	5065	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
174745	chr4	45699651	45699750	+	0	NA	Intergenic	AluYe5|SINE|Alu	424354	NM_173536	2565		NM_173536	ENSG00000163285	GABRG1	-	gamma-aminobutyric acid type A receptor subunit gamma1	protein-coding
98108	chr17	45614921	45615180	+	0	NA	Intergenic	L2c|LINE|L2	-5279	NR_138259	147081		NM_152466	ENSG00000293460	LINC02210	C17orf69|CRHR1-IT1	long intergenic non-protein coding RNA 2210	ncRNA
98460	chr17	47097071	47097230	+	0	NA	Intergenic	AluSq2|SINE|Alu	92145	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
94231	chr17	28658821	28660030	+	0	NA	intron (NR_045585, intron 1 of 2)	SVA_A|Retroposon|SVA	2481	NM_006923	6388		NM_006923	ENSG00000132581	SDF2	-	stromal cell derived factor 2	protein-coding
44767	chr11	112254471	112254830	+	0	NA	intron (NM_001145024, intron 2 of 3)	(GT)n|Simple_repeat|Simple_repeat	-5615	NR_133566	100132686		NR_133566	ENSG00000268472	LOC100132686	-	uncharacterized LOC100132686	ncRNA
77614	chr15	85379171	85382030	+	0	NA	promoter-TSS (NM_006738)	promoter-TSS (NM_006738)	-3	NM_006738	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
11914	chr1	93358021	93358280	+	0	NA	intron (NM_001938, intron 2 of 2)	intron (NM_001938, intron 2 of 2)	12243	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
182036	chr5	55695921	55696180	+	0	NA	intron (NM_173514, intron 3 of 15)	SVA_D|Retroposon|SVA	-2997	NR_047649	153129		NM_173514	ENSG00000177058	SLC38A9	SNAT9|URLC11	solute carrier family 38 member 9	protein-coding
136087	chr2	173357251	173357550	+	0	NA	intron (NM_031942, intron 1 of 9)	intron (NM_031942, intron 1 of 9)	2528	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
126964	chr2	36240171	36241150	+	0	NA	Intergenic	Intergenic	114910	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
77775	chr15	85858501	85859030	+	0	NA	Intergenic	Intergenic	33130	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
206089	chr7	27191571	27191930	+	0	NA	Intergenic	Intergenic	6342	NR_002795	221883		NR_002795	ENSG00000240990	HOXA11-AS	HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|LncHOXA11|NCRNA00076	HOXA11 antisense RNA	ncRNA
195965	chr6	41952871	41953550	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx1|SINE|Alu	-11362	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
157584	chr22	45993621	45994150	+	0	NA	Intergenic	(TGGTGG)n|Simple_repeat|Simple_repeat	-12731	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
30180	chr10	74266021	74266400	+	0	NA	intron (NM_001369123, intron 3 of 9)	intron (NM_001369123, intron 3 of 9)	89447	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
152266	chr22	20265821	20266230	+	0	NA	intron (NM_023004, intron 1 of 1)	MIRc|SINE|MIR	2293	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
160845	chr3	33089121	33090180	+	0	NA	TTS (NM_001039770)	TTS (NM_001039770)	7182	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
98801	chr17	48261371	48261550	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-32887	NR_131239	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
160370	chr3	27901451	27901550	+	0	NA	Intergenic	AluSz|SINE|Alu	-67364	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
98495	chr17	47305071	47305580	+	0	NA	intron (NR_110880, intron 2 of 2)	intron (NR_110880, intron 2 of 2)	18288	NR_110881	102724508		NR_110880	ENSG00000263293	EFCAB13-DT	THCAT158	EFCAB13 divergent transcript	ncRNA
25782	chr10	11161171	11161330	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-3631	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
229082	chr9	114361671	114362030	+	0	NA	exon (NM_001317950, exon 9 of 22)	exon (NM_001317950, exon 9 of 22)	26132	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
148336	chr20	63784871	63785030	+	0	NA	intron (NM_025224, intron 2 of 4)	intron (NM_025224, intron 2 of 4)	20553	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
116661	chr19	18374021	18375200	+	0	NA	Intergenic	Intergenic	-11548	NM_004864	9518		NM_004864	ENSG00000130513	GDF15	GDF-15|HG|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB	growth differentiation factor 15	protein-coding
214194	chr7	148527271	148527890	+	0	NA	Intergenic	MER66C|LTR|ERV1	-63186	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
236330	chrX	69221951	69222450	+	0	NA	Intergenic	Intergenic	42643	NR_103715	100996279		NR_103715	ENSG00000215162	LINC00269	CXorf62|NCRNA00269	long intergenic non-protein coding RNA 269	ncRNA
191147	chr6	4575771	4575940	+	0	NA	Intergenic	Intergenic	-34710	NR_122107	497048		NM_001011540	ENSG00000205444	KU-MEL-3	-	uncharacterized LOC497048	ncRNA
121240	chr19	46657051	46657430	+	0	NA	intron (NM_145056, intron 1 of 3)	MIRb|SINE|MIR	-2522	NM_001301046	147906		NM_145056	ENSG00000197380	DACT3	DAPPER3|RRR1	dishevelled binding antagonist of beta catenin 3	protein-coding
33116	chr10	111598521	111598780	+	0	NA	Intergenic	Intergenic	484359	NR_159949	113633881		NR_159949		HEAT2	lnc-ADRA2A-1:1	HEart disease Associated Transcript 2	ncRNA
1900	chr1	6452501	6452780	+	0	NA	intron (NM_031475, intron 10 of 12)	MER5A1|DNA|hAT-Charlie	13533	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
231415	chr9	131123401	131123600	+	0	NA	TTS (NM_001185096)	TTS (NM_001185096)	-2086	NM_005085	8021		NM_005085	ENSG00000126883	NUP214	CAIN|CAN|IIAE9	nucleoporin 214	protein-coding
93429	chr17	18476171	18476980	+	0	NA	promoter-TSS (NM_001040078).2	promoter-TSS (NM_001040078).2	-214	NM_001040078	654346		NM_001040078	ENSG00000171916	LGALS9C	Gal-9B|LGALS9B	galectin 9C	protein-coding
165447	chr3	98561871	98562530	+	0	NA	Intergenic	Intergenic	30222	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
238618	chrX	153947051	153947980	+	0	NA	TTS (NM_005334)	TTS (NM_005334)	-2872	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
206383	chr7	30728721	30728980	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-23285	NM_006774	11185		NM_006774	ENSG00000241644	INMT	TEMT	indolethylamine N-methyltransferase	protein-coding
180211	chr5	1511501	1512100	+	0	NA	promoter-TSS (NR_106723)	promoter-TSS (NR_106723)	-944	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
105954	chr18	3985001	3985330	+	0	NA	intron (NR_102696, intron 1 of 4)	intron (NR_102696, intron 1 of 4)	22812	NR_102696	101410534		NR_102696		DLGAP1-AS4	-	DLGAP1 antisense RNA 4	ncRNA
152298	chr22	20321571	20322030	+	0	NA	Intergenic	LTR56|LTR|ERV1	-1740	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
112218	chr19	5700651	5701350	+	0	NA	intron (NR_076392, intron 9 of 18)	intron (NR_076392, intron 9 of 18)	10705	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
97407	chr17	43391921	43392180	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-3152	NR_027413	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
144131	chr20	34009471	34010880	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-15808	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
24277	chr1	236489751	236490130	+	0	NA	Intergenic	Intergenic	-28274	NM_201545	3964		NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
59235	chr13	23754351	23755000	+	0	NA	intron (NM_005932, intron 18 of 18)	intron (NM_005932, intron 18 of 18)	-134193	NM_001014442								
5026	chr1	24504201	24504630	+	0	NA	intron (NM_001251983, intron 1 of 3)	AluJb|SINE|Alu	1518	NM_001251981	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
121573	chr19	47270151	47270830	+	0	NA	intron (NM_015603, intron 9 of 11)	intron (NM_015603, intron 9 of 11)	-3933	NR_037675	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
66740	chr14	64508271	64508430	+	0	NA	intron (NM_001123329, intron 1 of 1)	intron (NM_001123329, intron 1 of 1)	-3137	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
162849	chr3	49335421	49335880	+	0	NA	intron (NM_199443, intron 1 of 20)	intron (NM_199443, intron 1 of 20)	4403	NM_003363	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
234008	chrX	3695271	3695430	+	0	NA	intron (NM_005044, intron 1 of 8)	HAL1ME|LINE|L1	18299	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
136314	chr2	175004671	175005850	+	0	NA	promoter-TSS (NM_001371514)	promoter-TSS (NM_001371514)	121	NM_001822	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
154130	chr22	31209821	31210230	+	0	NA	Intergenic	L2|LINE|L2	-2273	NM_005569	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
9872	chr1	54304751	54305050	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	68457	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
214929	chr7	151538001	151538400	+	0	NA	Intergenic	Intergenic	-18305	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
238485	chrX	153475671	153475830	+	0	NA	intron (NR_169631, intron 1 of 10)	intron (NR_169631, intron 1 of 10)	-3516	NR_169597	105373381		NR_169597		ECMXP	-	extracellular matrix protein X-linked, pseudogene	pseudo
231688	chr9	131708301	131708980	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	1202	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
105604	chr18	681651	682550	+	0	NA	intron (NM_001354065, intron 10 of 14)	MamRep605|LTR?|LTR?	-23809	NM_001012716	494514		NM_001012716		TYMSOS	C18orf56	TYMS opposite strand RNA	ncRNA
203374	chr6	170459371	170459980	+	0	NA	Intergenic	Intergenic	93632	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
160527	chr3	30652301	30652500	+	0	NA	intron (NM_001024847, intron 4 of 7)	AluSx|SINE|Alu	45799	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
187784	chr5	146187151	146187450	+	0	NA	Intergenic	Intergenic	-4513	NM_016460	51520		NM_016460	ENSG00000133706	LARS1	HSPC192|ILFS1|LARS|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|cLRS|hr025Cl	leucyl-tRNA synthetase 1	protein-coding
135561	chr2	165391951	165392050	+	0	NA	3' UTR (NM_001040143, exon 28 of 28)	3' UTR (NM_001040143, exon 28 of 28)	-77698	NM_001172173	80034		NM_024969	ENSG00000178662	CSRNP3	FAM130A2|MBU1|PPP1R73|TAIP-2|TAIP2	cysteine and serine rich nuclear protein 3	protein-coding
220170	chr8	95132051	95132350	+	0	NA	Intergenic	MIR|SINE|MIR	-1585	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
177541	chr4	118888761	118889280	+	0	NA	5' UTR (NM_001128934, exon 1 of 5)	5' UTR (NM_001128934, exon 1 of 5)	166	NM_133477	171024		NM_133477	ENSG00000172403	SYNPO2	SYISL	synaptopodin 2	protein-coding
129548	chr2	69804601	69804800	+	0	NA	intron (NM_001320698, intron 6 of 14)	intron (NM_001320698, intron 6 of 14)	-5702	NR_164153	107985770		NR_164153	ENSG00000288869	SMANTIS	ANXA4-AS|n342419	SMARCA4 interacting SWI/SNF chromatin remodeling complex scaffold lncRNA	ncRNA
54638	chr12	92911501	92911700	+	0	NA	intron (NM_003566, intron 1 of 28)	L1MC1|LINE|L1	17695	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
120676	chr19	45116451	45116550	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	23321	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
172412	chr4	1802021	1802280	+	0	NA	intron (NM_022965, intron 7 of 15)	CpG-20866	8838	NM_001163213	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
235252	chrX	41580401	41581080	+	0	NA	intron (NM_001126055, intron 13 of 24)	intron (NM_001126055, intron 13 of 24)	-108233	NM_005300	2857		NM_005300	ENSG00000171659	GPR34	LPS1|LYPSR1	G protein-coupled receptor 34	protein-coding
79098	chr16	186601	186880	+	0	NA	Intergenic	CpG	6281	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
228875	chr9	112443271	112443500	+	0	NA	intron (NR_036651, intron 7 of 9)	MIRb|SINE|MIR	-43442	NM_001287038	158405		NM_133465	ENSG00000165185	KIAA1958	-	KIAA1958	protein-coding
61899	chr13	77322821	77323480	+	0	NA	intron (NM_015057, intron 1 of 82)	MIR|SINE|MIR	3944	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
65891	chr14	55189501	55190000	+	0	NA	intron (NM_014750, intron 1 of 18)	MER21B|LTR|ERVL	1835	NM_001146015	9787		NM_014750	ENSG00000126787	DLGAP5	DLG7|HURP	DLG associated protein 5	protein-coding
91618	chr17	5390651	5391150	+	0	NA	intron (NM_002532, intron 10 of 16)	AluJr|SINE|Alu	-28741	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
29365	chr10	69644371	69644880	+	0	NA	Intergenic	Intergenic	14378	NM_145306	219738		NM_145306	ENSG00000171224	FAM241B	C10orf35	family with sequence similarity 241 member B	protein-coding
65405	chr14	50814351	50814750	+	0	NA	intron (NM_020921, intron 3 of 30)	L1PA11|LINE|L1	-7247	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
233540	chrX	231851	232700	+	0	NA	Intergenic	CpG	-44081	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228340	chr9	98944221	98944480	+	0	NA	intron (NM_001855, intron 2 of 41)	CpG-28591	443	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
143355	chr20	25867021	25867280	+	0	NA	Intergenic	Intergenic	-13129	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
68376	chr14	77862051	77862400	+	0	NA	intron (NM_001366489, intron 4 of 9)	intron (NM_001366489, intron 4 of 9)	62116	NM_001366489	57143		NM_020421	ENSG00000063761	ADCK1	MCP2	aarF domain containing kinase 1	protein-coding
190074	chr5	177673771	177674200	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-1708	NR_026921	202181		NR_026921		SIMC1P1	-	SIMC1 pseudogene 1	pseudo
101718	chr17	68520871	68521230	+	0	NA	intron (NM_212471, intron 2 of 10)	AluSx4|SINE|Alu	5656	NM_001276290	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
31347	chr10	93150471	93150630	+	0	NA	Intergenic	Intergenic	76657	NM_000783	1592		NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	cytochrome P450 family 26 subfamily A member 1	protein-coding
185393	chr5	128092071	128092930	+	0	NA	intron (NR_046207, intron 1 of 26)	MER33|DNA|hAT-Charlie	8734	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
178246	chr4	143512801	143514880	+	0	NA	non-coding (NR_104027, exon 2 of 2)	non-coding (NR_104027, exon 2 of 2)	138	NM_003601	8467		NM_003601	ENSG00000153147	SMARCA5	ISWI|SNF2H|WCRF135|hISWI|hSNF2H	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding
29390	chr10	70131521	70131780	+	0	NA	intron (NM_001198696, intron 1 of 8)	intron (NM_001198696, intron 1 of 8)	1175	NM_032797	84883		NM_032797	ENSG00000042286	AIFM2	AMID|FSP1|PRG3	apoptosis inducing factor mitochondria associated 2	protein-coding
65198	chr14	49641401	49642200	+	0	NA	Intergenic	Intergenic	-6556	NM_018139	55172		NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
219866	chr8	85175971	85176130	+	0	NA	intron (NR_134311, intron 1 of 2)	AluSz|SINE|Alu	991	NR_134311	102723322		NR_134311	ENSG00000260493	E2F5-DT	-	E2F5 divergent transcript	ncRNA
187683	chr5	143322271	143322830	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	80733	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
80453	chr16	2676121	2676580	+	0	NA	Intergenic	Intergenic	-2911	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
105703	chr18	2684821	2685630	+	0	NA	intron (NM_015295, intron 5 of 47)	AluYk4|SINE|Alu	29499	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
10842	chr1	77955151	77956030	+	0	NA	intron (NR_146539, intron 17 of 22)	L1MC4|LINE|L1	23482	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
189414	chr5	172804671	172805030	+	0	NA	Intergenic	Intergenic	-29401	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
114022	chr19	10916271	10916630	+	0	NA	exon (NM_001370088, exon 7 of 15)	exon (NM_001370088, exon 7 of 15)	12189	NM_024029	78992		NM_024029	ENSG00000130733	YIPF2	FinGER2|YIPFbeta3B|Yip5C	Yip1 domain family member 2	protein-coding
2033	chr1	7700751	7701250	+	0	NA	intron (NM_001349613, intron 1 of 11)	AluJb|SINE|Alu	-3736	NM_001349622	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
108788	chr18	77258521	77258780	+	0	NA	intron (NM_001480, intron 2 of 2)	(GTG)n|Simple_repeat|Simple_repeat	8802	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
78387	chr15	91864671	91865180	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	10621	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
35848	chr11	2314151	2314450	+	0	NA	intron (NM_139022, intron 5 of 9)	intron (NM_139022, intron 5 of 9)	-11160	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
139705	chr2	227484251	227485030	+	0	NA	intron (NM_001135189, intron 1 of 11)	L1MEd|LINE|L1	12484	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
122645	chr19	49849071	49849230	+	0	NA	intron (NR_040037, intron 1 of 3)	Tigger13a|DNA|TcMar-Tigger	-1555	NM_001364749	53635		NM_017432	ENSG00000104960	PTOV1	ACID2|PTOV-1	PTOV1 extended AT-hook containing adaptor protein	protein-coding
78189	chr15	90563421	90563730	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	33652	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
58719	chr12	132576871	132577530	+	0	NA	intron (NM_001367871, intron 15 of 18)	intron (NM_001367871, intron 15 of 18)	-4797	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
98286	chr17	46222301	46222700	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	2867	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
126132	chr2	26122171	26122730	+	0	NA	intron (NM_016131, intron 3 of 5)	AluY|SINE|Alu	-50638	NM_001168241	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
81488	chr16	8941051	8941350	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	-4561	NM_001286457	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
37735	chr11	31803221	31803780	+	0	NA	5' UTR (NM_001368899, exon 1 of 10)	5' UTR (NM_001368899, exon 1 of 10)	173	NM_001368929	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
60424	chr13	40985771	40987380	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	-3676	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
79964	chr16	1777351	1777850	+	0	NA	intron (NM_080861, intron 6 of 6)	intron (NM_080861, intron 6 of 6)	4222	NM_001324081	90864		NM_080861	ENSG00000162032	SPSB3	C16orf31|SSB3	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding
5341	chr1	25259551	25260280	+	0	NA	intron (NR_135788, intron 1 of 3)	intron (NR_135788, intron 1 of 3)	8010	NR_135777	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
179582	chr4	185305001	185305200	+	0	NA	intron (NM_001378032, intron 7 of 19)	MER20|DNA|hAT-Charlie	73898	NM_018409	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
236798	chrX	79151121	79151800	+	0	NA	intron (NM_032553, intron 1 of 2)	L1MA10|LINE|L1	6772	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
35141	chr11	720501	721390	+	0	NA	intron (NM_022772, intron 7 of 20)	CpG-3775	-13862	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
31149	chr10	90751471	90751650	+	0	NA	intron (NM_000872, intron 1 of 2)	intron (NM_000872, intron 1 of 2)	106479	NM_019859	3363		NM_000872	ENSG00000148680	HTR7	5-HT7	5-hydroxytryptamine receptor 7	protein-coding
53997	chr12	75389421	75390000	+	0	NA	intron (NR_149157, intron 1 of 11)	intron (NR_149157, intron 1 of 11)	1191	NR_149156	84698		NM_032606	ENSG00000180881	CAPS2	UG0636c06	calcyphosine 2	protein-coding
74901	chr15	63604971	63605200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4258	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
109139	chr18	80200451	80201230	+	0	NA	intron (NM_032510, intron 2 of 2)	intron (NM_032510, intron 2 of 2)	46674	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
218434	chr8	47826501	47826700	+	0	NA	intron (NM_006904, intron 63 of 85)	intron (NM_006904, intron 63 of 85)	-88436	NM_005195	1052		NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT enhancer binding protein delta	protein-coding
217622	chr8	30041751	30042250	+	0	NA	Intergenic	AluSz6|SINE|Alu	41064	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
49406	chr12	22596201	22596600	+	0	NA	intron (NR_135030, intron 2 of 3)	intron (NR_135030, intron 2 of 3)	28646	NR_135031	105369691		NR_135030		ETNK1-DT	-	ETNK1 divergent transcript	ncRNA
239137	chrY	11317751	11318230	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1103600	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
74372	chr15	58768621	58769080	+	0	NA	non-coding (NR_135474, exon 2 of 2)	non-coding (NR_135474, exon 2 of 2)	2124	NR_135474	101928725		NR_135474	ENSG00000245975	MINDY2-DT	-	MINDY2 divergent transcript	ncRNA
98073	chr17	45494701	45494900	+	0	NA	Intergenic	Intergenic	-4079	NR_027782	9842		NM_014798	ENSG00000225190	PLEKHM1	AP162|B2|OPTA3|OPTB6	pleckstrin homology and RUN domain containing M1	protein-coding
220723	chr8	102044971	102045130	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	60618	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
188561	chr5	157027601	157028000	+	0	NA	Intergenic	AluSq2|SINE|Alu	30441	NM_012206	26762		NM_012206	ENSG00000113249	HAVCR1	CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
30833	chr10	86403451	86403550	+	0	NA	Intergenic	Intergenic	-36705	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
24757	chr1	248825251	248827350	+	0	NA	promoter-TSS (NR_036070)	promoter-TSS (NR_036070)	-77	NR_036070	100422879		NR_036070	ENSG00000264500	MIR3124	mir-3124	microRNA 3124	ncRNA
210921	chr7	101223101	101224130	+	0	NA	intron (NM_006349, intron 3 of 4)	intron (NM_006349, intron 3 of 4)	5450	NM_006349	10467		NM_006349	ENSG00000106400	ZNHIT1	CG1I|ZNFN4A1|p18(Hamlet)	zinc finger HIT-type containing 1	protein-coding
13785	chr1	117357971	117358780	+	0	NA	Intergenic	L1PA3|LINE|L1	-9074	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
143967	chr20	32840671	32841280	+	0	NA	intron (NM_012325, intron 5 of 6)	AluSx|SINE|Alu	-17948	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
137958	chr2	201150071	201150730	+	0	NA	intron (NR_147243, intron 8 of 10)	AluJb|SINE|Alu	7392	NR_040030	65072		NR_040030	ENSG00000226312	CFLAR-AS1	ALS2CR10	CFLAR antisense RNA 1	ncRNA
166933	chr3	125121521	125121890	+	0	NA	intron (NM_024628, intron 6 of 13)	MIR|SINE|MIR	29847	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
52972	chr12	57474721	57475430	+	0	NA	intron (NM_001080156, intron 10 of 15)	intron (NM_001080156, intron 10 of 15)	2792	NM_001319851	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
193238	chr6	29925451	29925550	+	0	NA	non-coding (NR_001317, exon 1 of 1)	non-coding (NR_001317, exon 1 of 1)	1715	NR_001317	80868		NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B	ncRNA
194758	chr6	34027171	34027940	+	0	NA	intron (NM_000841, intron 10 of 10)	intron (NM_000841, intron 10 of 10)	-27504	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275|mir-1275	microRNA 1275	ncRNA
138393	chr2	204242921	204243380	+	0	NA	Intergenic	Intergenic	-302325	NM_205863	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
209408	chr7	76342651	76343150	+	0	NA	intron (NM_012479, intron 1 of 1)	AluSx1|SINE|Alu	16091	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
123593	chr19	54472221	54472630	+	0	NA	intron (NM_145057, intron 1 of 2).4	MSR1|Satellite|Satellite	871	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
201394	chr6	145816171	145816530	+	0	NA	intron (NR_038244, intron 1 of 3)	intron (NR_038244, intron 1 of 3)	1474	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
52301	chr12	54725271	54725630	+	0	NA	Intergenic	MER34-int|LTR|ERV1	-77085	NM_001300854	117159		NM_053283	ENSG00000161634	DCD	AIDD|DCD-1|DSEP|HCAP|PIF	dermcidin	protein-coding
28282	chr10	46027651	46027950	+	0	NA	intron (NM_001145261, intron 1 of 10)	MARNA|DNA|TcMar-Mariner	2914	NM_001145263	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
230973	chr9	129463271	129463600	+	0	NA	Intergenic	MIRb|SINE|MIR	-25225	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
220624	chr8	100934111	100934930	+	0	NA	intron (NM_001135702, intron 2 of 5)	AluSx1|SINE|Alu	16051	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
184219	chr5	96275221	96275300	+	0	NA	intron (NR_130776, intron 1 of 4)	intron (NR_130776, intron 1 of 4)	156899	NM_001177875	5122		NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC1/3|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding
157036	chr22	42567671	42567830	+	0	NA	intron (NM_014509, intron 9 of 11)	AluSq2|SINE|Alu	13794	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
187266	chr5	141510301	141510580	+	0	NA	intron (NM_018912, intron 3 of 3)	L2b|LINE|L2	21199	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
70001	chr14	100064701	100065800	+	0	NA	promoter-TSS (NM_016337)	promoter-TSS (NM_016337)	-172	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
172741	chr4	2834421	2834680	+	0	NA	3' UTR (NM_003023, exon 13 of 13)	3' UTR (NM_003023, exon 13 of 13)	-9294	NM_001354759	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
96915	chr17	42144971	42145780	+	0	NA	intron (NM_201434, intron 1 of 6)	L1MC3|LINE|L1	9614	NM_201434	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
182584	chr5	65970871	65971200	+	0	NA	intron (NM_001253697, intron 1 of 25)	intron (NM_001253697, intron 1 of 25)	-25462	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
141806	chr20	321151	321250	+	0	NA	intron (NR_109990, intron 2 of 2)	AluY|SINE|Alu	4052	NR_109990	100507459		NR_109990	ENSG00000225377	NRSN2-AS1	-	NRSN2 antisense RNA 1	ncRNA
137608	chr2	197296551	197297300	+	0	NA	intron (NR_046837, intron 3 of 5)	intron (NR_046837, intron 3 of 5)	5594	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
103326	chr17	77962121	77962680	+	0	NA	Intergenic	Intergenic	-41837	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
76303	chr15	74322551	74322850	+	0	NA	intron (NM_182791, intron 1 of 8)	intron (NM_182791, intron 1 of 8)	4141	NM_182791	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
207890	chr7	50404221	50404850	+	0	NA	3' UTR (NM_001291842, exon 5 of 5)	3' UTR (NM_001291842, exon 5 of 5)	45815	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
43386	chr11	77069451	77069550	+	0	NA	intron (NM_004055, intron 1 of 12)	intron (NM_004055, intron 1 of 12)	2529	NM_004055	726		NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
140139	chr2	231590721	231590980	+	0	NA	Intergenic	Intergenic	-2014	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
106495	chr18	14747701	14748100	+	0	NA	promoter-TSS (NM_001367607)	promoter-TSS (NM_001367607)	-272	NM_001367607	374860		NM_001145029	ENSG00000180777	ANKRD30B	NY-BR-1.1	ankyrin repeat domain 30B	protein-coding
115117	chr19	14355851	14356950	+	0	NA	intron (NR_134908, intron 1 of 3)	intron (NR_134908, intron 1 of 3)	7590	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
155197	chr22	37820371	37820530	+	0	NA	Intergenic	Intergenic	-2932	NM_003614	8484		NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
77255	chr15	81311771	81312450	+	0	NA	non-coding (NR_135013, exon 5 of 5)	non-coding (NR_135013, exon 5 of 5)	12031	NR_135013	80765		NM_030574	ENSG00000172345	STARD5	-	StAR related lipid transfer domain containing 5	protein-coding
181352	chr5	40442501	40442650	+	0	NA	Intergenic	Intergenic	-237340	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
152784	chr22	21814151	21814250	+	0	NA	intron (NM_138957, intron 1 of 7)	L1MB2|LINE|L1	53445	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
138099	chr2	202266601	202267930	+	0	NA	intron (NM_015934, intron 1 of 14)	intron (NM_015934, intron 1 of 14)	1502	NM_015934	51602		NM_015934	ENSG00000055044	NOP58	HSPC120|NOP5|NOP5/NOP58	NOP58 ribonucleoprotein	protein-coding
208097	chr7	56370451	56370830	+	0	NA	Intergenic	Intergenic	77735	NR_029420	650226		NR_029420		LOC650226	-	ankyrin repeat domain containing 26 pseudogene	pseudo
79328	chr16	573801	574200	+	0	NA	intron (NM_004204, intron 1 of 10)	intron (NM_004204, intron 1 of 10)	4032	NM_004204	9091		NM_004204	ENSG00000007541	PIGQ	DEE77|EIEE77|GPI1|GPIBD19|MCAHS4|c407A10.1	phosphatidylinositol glycan anchor biosynthesis class Q	protein-coding
178279	chr4	144392051	144392170	+	0	NA	Intergenic	L1PA3|LINE|L1	-251392	NM_001308187	2993		NM_002099	ENSG00000170180	GYPA	CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2	glycophorin A (MNS blood group)	protein-coding
141587	chr2	241616271	241616780	+	0	NA	intron (NM_015963, intron 2 of 5)	intron (NM_015963, intron 2 of 5)	976	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
155222	chr22	37898071	37898430	+	0	NA	Intergenic	Intergenic	-8047	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
9522	chr1	51442321	51443380	+	0	NA	intron (NM_001981, intron 11 of 24)	intron (NM_001981, intron 11 of 24)	-20755	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
96727	chr17	41663751	41664600	+	0	NA	Intergenic	Intergenic	-23976	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
196012	chr6	42015171	42015530	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	33544	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
216235	chr8	12191871	12192380	+	0	NA	intron (NR_003494, intron 1 of 5)	intron (NR_003494, intron 1 of 5)	2004	NR_003494	85002		NM_001083537	ENSG00000186523	FAM86B1	-	family with sequence similarity 86 member B1	protein-coding
187298	chr5	141600071	141600480	+	0	NA	intron (NM_005219, intron 1 of 27)	MLT1E2|LTR|ERVL-MaLR	18725	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
61525	chr13	59722471	59722630	+	0	NA	intron (NM_001042517, intron 27 of 27)	LTR67B|LTR|ERVL	-290168	NR_109838	100874195		NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
16941	chr1	155914971	155915500	+	0	NA	intron (NM_014949, intron 13 of 13)	AluSx|SINE|Alu	-3886	NM_001256820	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
40310	chr11	63886471	63886630	+	0	NA	intron (NM_004954, intron 1 of 16)	AluSz6|SINE|Alu	-1987	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
29020	chr10	63631871	63632230	+	0	NA	Intergenic	Intergenic	-110160	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
138142	chr2	202309901	202310900	+	0	NA	Intergenic	L1MC5a|LINE|L1	17349	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
146642	chr20	50335121	50335430	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-13933	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
177325	chr4	109731671	109731830	+	0	NA	intron (NM_001375281, intron 12 of 12)	MIRc|SINE|MIR	-1680	NM_030821	81579		NM_030821	ENSG00000123739	PLA2G12A	GXII|PLA2G12|ROSSY	phospholipase A2 group XIIA	protein-coding
163088	chr3	50097001	50097600	+	0	NA	intron (NR_036627, intron 4 of 23)	AluY|SINE|Alu	3688	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
142135	chr20	2745151	2745450	+	0	NA	intron (NR_138537, intron 7 of 17)	intron (NR_138537, intron 7 of 17)	52422	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
148517	chr20	64090501	64090980	+	0	NA	intron (NM_001200019, intron 2 of 5)	intron (NM_001200019, intron 2 of 5)	-1948	NM_001318855	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
213843	chr7	141747571	141747730	+	0	NA	intron (NR_046269, intron 7 of 7)	AluSx4|SINE|Alu	9043	NM_001256510	6742		NM_003143	ENSG00000106028	SSBP1	Mt-SSB|OPA13|SOSS-B1|SSBP|mtSSB	single stranded DNA binding protein 1	protein-coding
120649	chr19	45076001	45076750	+	0	NA	5' UTR (NM_145288, exon 1 of 3)	5' UTR (NM_145288, exon 1 of 3)	103	NM_145288	162979		NM_145288	ENSG00000170684	ZNF296	ZFP296|ZNF342	zinc finger protein 296	protein-coding
111480	chr19	3955571	3956150	+	0	NA	Intergenic	Intergenic	5652	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
56244	chr12	111991101	111991330	+	0	NA	intron (NM_001294314, intron 4 of 12)	AluSc|SINE|Alu	21950	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
47228	chr12	951151	951250	+	0	NA	intron (NM_001297419, intron 1 of 11)	AluJr|SINE|Alu	-1478	NR_123713	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
183911	chr5	87389221	87390780	+	0	NA	non-coding (NR_157071, exon 8 of 8)	non-coding (NR_157071, exon 8 of 8)	22904	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
32967	chr10	110494701	110495150	+	0	NA	Intergenic	Intergenic	-2982	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
49355	chr12	22325371	22325730	+	0	NA	intron (NM_001304450, intron 1 of 3)	intron (NM_001304450, intron 1 of 3)	9164	NM_003034	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
130372	chr2	85290571	85290730	+	0	NA	intron (NM_031283, intron 4 of 11)	intron (NM_031283, intron 4 of 11)	37339	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
148491	chr20	64062271	64064080	+	0	NA	promoter-TSS (NM_003195)	promoter-TSS (NM_003195)	-23	NM_003195	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
234464	chrX	17741251	17741350	+	0	NA	intron (NM_001037536, intron 1 of 5)	MER1B|DNA|hAT-Charlie	3807	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
95053	chr17	32555071	32555230	+	0	NA	intron (NM_015194, intron 21 of 21)	L1M5|LINE|L1	68157	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
158761	chr3	9392071	9392380	+	0	NA	intron (NR_027007, intron 1 of 2)	intron (NR_027007, intron 1 of 2)	4398	NR_132781	440944		NM_001013713	ENSG00000206573	THUMPD3-AS1	SETD5-AS1	THUMPD3 antisense RNA 1	ncRNA
195357	chr6	36660571	36661130	+	0	NA	Intergenic	CpG	14276	NR_109836	101154753		NR_109836	ENSG00000281450	PANDAR	PANDA	promoter of CDKN1A antisense DNA damage activated RNA	ncRNA
238992	chrX	155995471	155995830	+	0	NA	Intergenic	Intergenic	-2046	NM_176786	3581		NM_002186	ENSG00000124334	IL9R	CD129|IL-9R	interleukin 9 receptor	protein-coding
175900	chr4	80130071	80130230	+	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	-55120	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
152683	chr22	21618121	21618480	+	0	NA	intron (NR_028436, intron 4 of 4)	AluY|SINE|Alu	11722	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
162876	chr3	49370421	49370880	+	0	NA	intron (NM_001313941, intron 3 of 5)	intron (NM_001313941, intron 3 of 5)	-12050	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
167428	chr3	129028471	129028830	+	0	NA	intron (NM_024768, intron 2 of 7)	AluSc|SINE|Alu	-24648	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
59313	chr13	24297701	24298300	+	0	NA	intron (NM_153023, intron 10 of 11)	MIR|SINE|MIR	-9166	NM_001303138	338872		NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and TNF related 9	protein-coding
93501	chr17	18990671	18991030	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	13914	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
236766	chrX	78949721	78950030	+	0	NA	intron (NM_001324221, intron 2 of 2)	intron (NM_001324221, intron 2 of 2)	4484	NM_001324225	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
231293	chr9	130038021	130039090	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluSg|SINE|Alu	4634	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
227041	chr9	83966921	83968130	+	0	NA	TTS (NM_001318188)	TTS (NM_001318188)	2332	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
108294	chr18	63319311	63321300	+	0	NA	promoter-TSS (NM_000633)	promoter-TSS (NM_000633)	-536	NM_000657	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
148760	chr21	8151821	8152080	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	-45670	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
158490	chr3	249251	249350	+	0	NA	TTS (NR_045572)	TTS (NR_045572)	51411	NR_045572	10752		NM_006614	ENSG00000134121	CHL1	CALL|L1CAM2	cell adhesion molecule L1 like	protein-coding
118410	chr19	35755371	35756030	+	0	NA	intron (NM_144617, intron 2 of 2)	CpG	1329	NM_144617	126393		NM_144617	ENSG00000004776	HSPB6	HEL55|Hsp20|PPP1R91	heat shock protein family B (small) member 6	protein-coding
16778	chr1	155507851	155508380	+	0	NA	intron (NM_018489, intron 2 of 27)	intron (NM_018489, intron 2 of 27)	-53927	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
204872	chr7	5895101	5895300	+	0	NA	Intergenic	MamGypLTR2b|LTR|Gypsy	-3533	NM_015622	51622		NM_015622	ENSG00000122674	CCZ1	C7orf28A|CCZ1A|CGI-43|H_DJ1163J12.2	CCZ1 homolog, vacuolar protein trafficking and biogenesis associated	protein-coding
19756	chr1	181482801	181483000	+	0	NA	promoter-TSS (NM_000721)	promoter-TSS (NM_000721)	-617	NM_001205293	777		NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|DEE69|EIEE69|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
14343	chr1	143976951	143977250	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-3581	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
7638	chr1	35572201	35572400	+	0	NA	Intergenic	Intergenic	-1014	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
175650	chr4	76688021	76688280	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	112599	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
88304	chr16	84138851	84139300	+	0	NA	intron (NM_001146051, intron 1 of 6)	intron (NM_001146051, intron 1 of 6)	6102	NM_031463	83693		NM_031463	ENSG00000103160	HSDL1	SDR12C3	hydroxysteroid dehydrogenase like 1	protein-coding
221457	chr8	124439471	124439630	+	0	NA	Intergenic	Intergenic	-11270	NM_017956	55039		NM_017956	ENSG00000183665	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog	protein-coding
123020	chr19	51121301	51121500	+	0	NA	Intergenic	Intergenic	-3480	NM_001198558	27180		NM_014441	ENSG00000129450	SIGLEC9	CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9	sialic acid binding Ig like lectin 9	protein-coding
157262	chr22	43891501	43891980	+	0	NA	exon (NM_138814, exon 1 of 9)	exon (NM_138814, exon 1 of 9)	273	NM_138814	150379		NM_138814	ENSG00000100341	PNPLA5	GS2L|dJ388M5|dJ388M5.4	patatin like phospholipase domain containing 5	protein-coding
33093	chr10	110910871	110911100	+	0	NA	intron (NM_001195304, intron 2 of 4)	intron (NM_001195304, intron 2 of 4)	7951	NM_001195306	92482		NM_001195304	ENSG00000214413	BBIP1	BBIP10|BBS18|NCRNA00081|bA348N5.3	BBSome interacting protein 1	protein-coding
187032	chr5	139794601	139794980	+	0	NA	Intergenic	Intergenic	-1018	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
58207	chr12	126773471	126773780	+	0	NA	Intergenic	Intergenic	-1363	NR_033878	387895		NR_033878		LINC00944	DMDRMR	long intergenic non-protein coding RNA 944	ncRNA
41080	chr11	65513221	65513480	+	0	NA	Intergenic	AluSz|SINE|Alu	-5918	NR_145459	109136579		NR_145459	ENSG00000289740	TALAM1	-	TALAM1 transcript, MALAT1 antisense RNA	ncRNA
103688	chr17	78806401	78807830	+	0	NA	exon (NM_001385169, exon 14 of 21)	exon (NM_001385169, exon 14 of 21)	-24773	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
126513	chr2	28418951	28419830	+	0	NA	Intergenic	Intergenic	-24718	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
100993	chr17	64635601	64636000	+	0	NA	intron (NM_022739, intron 1 of 18)	L1MB7|LINE|L1	26507	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
6392	chr1	27915801	27916000	+	0	NA	Intergenic	AluSp|SINE|Alu	-1103	NM_001286076	6118		NM_002946	ENSG00000117748	RPA2	REPA2|RP-A p32|RP-A p34|RPA32	replication protein A2	protein-coding
50914	chr12	49301951	49302050	+	0	NA	intron (NR_120449, intron 4 of 7)	L2c|LINE|L2	6853	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
131374	chr2	96210901	96211100	+	0	NA	intron (NR_046322, intron 1 of 3)	AluY|SINE|Alu	-2173	NM_001385622	56910		NM_020151	ENSG00000084090	STARD7	ADCME|BAFME2|FAME|FAME2|FCMTE2|GTT1	StAR related lipid transfer domain containing 7	protein-coding
129710	chr2	70851151	70852000	+	0	NA	Intergenic	Intergenic	-15759	NM_015717	50489		NM_015717	ENSG00000116031	CD207	CLEC4K	CD207 molecule	protein-coding
208373	chr7	66638971	66639330	+	0	NA	exon (NM_001167961, exon 4 of 5)	exon (NM_001167961, exon 4 of 5)	10269	NM_153033	154881		NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
52609	chr12	56236021	56236280	+	0	NA	intron (NM_173596, intron 8 of 12)	intron (NM_173596, intron 8 of 12)	5433	NM_001135195	283375		NM_173596	ENSG00000139540	SLC39A5	LZT-Hs7|MYP24|ZIP5	solute carrier family 39 member 5	protein-coding
119002	chr19	38893471	38894030	+	0	NA	intron (NR_034146, intron 1 of 13)	intron (NR_034146, intron 1 of 13)	405	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
91034	chr17	2842521	2842780	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	46212	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
160435	chr3	28328221	28328950	+	0	NA	intron (NM_022461, intron 6 of 7)	intron (NM_022461, intron 6 of 7)	-20136	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
3718	chr1	16616071	16616430	+	0	NA	Intergenic	MIR|SINE|MIR	-2686	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
59126	chr13	21368071	21368230	+	0	NA	intron (NR_046461, intron 3 of 4)	intron (NR_046461, intron 3 of 4)	-23291	NR_103841	100652865		NR_103840	ENSG00000224429	LINC00539	LINC00422	long intergenic non-protein coding RNA 539	ncRNA
54837	chr12	94989501	94989700	+	0	NA	intron (NM_001258338, intron 2 of 2)	intron (NM_001258338, intron 2 of 2)	14097	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
29875	chr10	72691821	72693680	+	0	NA	5' UTR (NM_001270680, exon 1 of 8)	5' UTR (NM_001270680, exon 1 of 8)	131	NM_001270680	90550		NM_138357	ENSG00000156026	MCU	C10orf42|CCDC109A|HsMCU	mitochondrial calcium uniporter	protein-coding
73435	chr15	43151371	43152000	+	0	NA	intron (NM_001347027, intron 4 of 9)	intron (NM_001347027, intron 4 of 9)	18099	NM_024956	80021		NM_024956	ENSG00000137842	TMEM62	-	transmembrane protein 62	protein-coding
155179	chr22	37749621	37749880	+	0	NA	intron (NM_138632, intron 1 of 7)	AluJo|SINE|Alu	3516	NM_138632	11078		NM_007032	ENSG00000100106	TRIOBP	DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
23701	chr1	231612251	231613780	+	0	NA	promoter-TSS (NR_034037)	promoter-TSS (NR_034037)	-925	NR_034037	100287814		NR_034037	ENSG00000229228	LINC00582	SMILO	long intergenic non-protein coding RNA 582	ncRNA
86347	chr16	66515201	66515480	+	0	NA	intron (NM_001271935, intron 6 of 7)	intron (NM_001271935, intron 6 of 7)	34782	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
236475	chrX	71616621	71617680	+	0	NA	exon (NM_001142797, exon 2 of 2)	exon (NM_001142797, exon 2 of 2)	1361	NM_001142797	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
137345	chr2	196145721	196146500	+	0	NA	intron (NM_004226, intron 3 of 7)	intron (NM_004226, intron 3 of 7)	25468	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
175365	chr4	70613951	70614050	+	0	NA	Intergenic	Intergenic	-14744	NM_031889	10117		NM_031889	ENSG00000132464	ENAM	ADAI|AI1C|AIH2	enamelin	protein-coding
178122	chr4	141637751	141637850	+	0	NA	intron (NR_037840, intron 1 of 7)	intron (NR_037840, intron 1 of 7)	1217	NR_037840	3600		NM_000585	ENSG00000164136	IL15	IL-15	interleukin 15	protein-coding
137870	chr2	200831051	200831800	+	0	NA	Intergenic	AluSc5|SINE|Alu	19039	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
85114	chr16	34158831	34158950	+	0	NA	Intergenic	CpG	-4688	NR_162093	113218496		NR_162093		MIR9901	-	microRNA 9901	ncRNA
103415	chr17	78215901	78216100	+	0	NA	exon (NM_001012271, exon 3 of 5)	exon (NM_001012271, exon 3 of 5)	1747	NM_001168	332		NM_001168	ENSG00000089685	BIRC5	API4|EPR-1	baculoviral IAP repeat containing 5	protein-coding
68866	chr14	91309201	91309400	+	0	NA	intron (NM_001080414, intron 16 of 29)	intron (NM_001080414, intron 16 of 29)	-55420	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
1313	chr1	2404251	2404630	+	0	NA	non-coding (NR_164636, exon 6 of 6)	non-coding (NR_164636, exon 6 of 6)	8124	NM_002617	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
19044	chr1	169698871	169699400	+	0	NA	intron (NM_000655, intron 7 of 8)	intron (NM_000655, intron 7 of 8)	9722	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
180354	chr5	6734601	6735200	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	21468	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
96630	chr17	40585921	40586680	+	0	NA	Intergenic	L1PB1|LINE|L1	-20828	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
129567	chr2	69917221	69917880	+	0	NA	intron (NM_001202514, intron 2 of 4)	intron (NM_001202514, intron 2 of 4)	2441	NM_001202513	4084		NM_002357	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
191196	chr6	5301671	5301830	+	0	NA	intron (NM_001374876, intron 2 of 7)	intron (NM_001374876, intron 2 of 7)	40237	NM_001374879	10667		NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
127480	chr2	42238371	42239280	+	0	NA	intron (NM_019063, intron 1 of 22)	AluJo|SINE|Alu	-68594	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
18500	chr1	161729851	161730430	+	0	NA	Intergenic	Intergenic	7487	NM_001288830	127943		NM_152378	ENSG00000162746	FCRLB	FCRL2|FCRLM2|FCRLY|FREB-2|FREB2|FcRY	Fc receptor like B	protein-coding
219659	chr8	80492471	80492630	+	0	NA	intron (NM_023929, intron 1 of 6)	AluSc8|SINE|Alu	6324	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
149993	chr21	36977021	36977780	+	0	NA	intron (NR_148020, intron 1 of 10)	intron (NR_148020, intron 1 of 10)	3497	NM_001352516	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
54014	chr12	75483701	75483930	+	0	NA	intron (NM_006851, intron 2 of 5)	L2c|LINE|L2	3060	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
91817	chr17	7094001	7094300	+	0	NA	Intergenic	Intergenic	-13899	NM_001330070	10462		NM_006344	ENSG00000132514	CLEC10A	CD301|CLECSF13|CLECSF14|HML|HML2|MGL	C-type lectin domain containing 10A	protein-coding
226885	chr9	78238051	78239380	+	0	NA	intron (NM_001349839, intron 1 of 16)	intron (NM_001349839, intron 1 of 16)	2640	NM_001330693	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
122308	chr19	49118481	49120630	+	0	NA	promoter-TSS (NM_018111)	promoter-TSS (NM_018111)	11	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
73957	chr15	51754351	51754450	+	0	NA	intron (NM_014548, intron 1 of 9)	intron (NM_014548, intron 1 of 9)	2803	NM_014548	29767		NM_014548	ENSG00000128872	TMOD2	N-TMOD|NTMOD	tropomodulin 2	protein-coding
46684	chr11	128749351	128749650	+	0	NA	intron (NM_001167681, intron 2 of 9)	MLT1G1|LTR|ERVL-MaLR	-53477	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
236562	chrX	72276451	72277750	+	0	NA	intron (NM_001007, intron 1 of 6)	CpG	148	NM_001007	6191		NM_001007	ENSG00000198034	RPS4X	CCG2|DXS306|RPS4|S4|SCAR|SCR10|eS4	ribosomal protein S4 X-linked	protein-coding
106778	chr18	23828121	23829050	+	0	NA	intron (NM_198129, intron 23 of 74)	(TG)n|Simple_repeat|Simple_repeat	-44435	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
200143	chr6	130270121	130270630	+	0	NA	intron (NM_001258275, intron 2 of 13)	AluSz6|SINE|Alu	-47424	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
19552	chr1	179029521	179029780	+	0	NA	intron (NM_001324311, intron 1 of 7)	intron (NM_001324311, intron 1 of 7)	3526	NM_001324311	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
170338	chr3	184472971	184473330	+	0	NA	Intergenic	Intergenic	71613	NR_161198	105374250		NR_161198	ENSG00000224153	LINC02054	-	long intergenic non-protein coding RNA 2054	ncRNA
136251	chr2	174627051	174627150	+	0	NA	intron (NM_001375833, intron 1 of 8)	intron (NM_001375833, intron 1 of 8)	7505	NM_001375837	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
217457	chr8	28704171	28704330	+	0	NA	intron (NR_073468, intron 1 of 4)	intron (NR_073468, intron 1 of 4)	2749	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
233718	chrX	1334751	1335550	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1466	NM_001267713	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
26527	chr10	21499101	21499430	+	0	NA	Intergenic	Intergenic	-2005	NR_160800	399726		NM_001010911	ENSG00000204682	MIR1915HG	C10orf114|CASC10|bA418C1.3	MIR1915 host gene	ncRNA
211041	chr7	102428921	102430030	+	0	NA	Intergenic	Intergenic	-4055	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
219909	chr8	86088551	86088800	+	0	NA	Intergenic	Intergenic	-10235	NM_152565	245972		NM_152565	ENSG00000147614	ATP6V0D2	ATP6D2|VMA6	ATPase H+ transporting V0 subunit d2	protein-coding
101540	chr17	67962171	67962700	+	0	NA	intron (NM_182641, intron 24 of 27)	intron (NM_182641, intron 24 of 27)	31171	NM_181656	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
239028	chrY	3006071	3006230	+	0	NA	intron (NR_046502, intron 1 of 3)	LTR4|LTR|ERV1	3154	NR_046502	100873962		NR_046502	ENSG00000231535	LINC00278	NCRNA00278|YY1BM	long intergenic non-protein coding RNA 278	ncRNA
10211	chr1	62391471	62391700	+	0	NA	Intergenic	MER91C|DNA|hAT-Tip100	-44719	NM_001017415	7398		NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
165468	chr3	98770421	98770680	+	0	NA	intron (NM_001323352, intron 3 of 10)	intron (NM_001323352, intron 3 of 10)	7243	NM_001323367	10402		NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
186991	chr5	139712601	139712800	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	33523	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
191168	chr6	4915751	4915850	+	0	NA	intron (NM_001368126, intron 2 of 6)	MER4D0|LTR|ERV1	25760	NM_001143971	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
27330	chr10	30532071	30532830	+	0	NA	Intergenic	AluSx|SINE|Alu	97303	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
17567	chr1	156818551	156818650	+	0	NA	intron (NM_001007792, intron 1 of 16)	L1PB2|LINE|L1	-1752	NM_001161441	9047		NM_003975	ENSG00000027869	SH2D2A	F2771|SCAP|TSAD|VRAP	SH2 domain containing 2A	protein-coding
94557	chr17	29611401	29612180	+	0	NA	intron (NM_152345, intron 9 of 14)	intron (NM_152345, intron 9 of 14)	6327	NM_001351302	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
108972	chr18	79618601	79618800	+	0	NA	Intergenic	Intergenic	39418	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
122971	chr19	50791871	50792750	+	0	NA	exon (NM_033068, exon 6 of 11)	exon (NM_033068, exon 6 of 11)	1895	NM_033068	93650		NM_033068	ENSG00000142513	ACP4	ACPT|AI1J	acid phosphatase 4	protein-coding
98962	chr17	48675171	48675330	+	0	NA	Intergenic	AluSx|SINE|Alu	-42691	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
229633	chr9	124133771	124133930	+	0	NA	Intergenic	MIR|SINE|MIR	122082	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
200392	chr6	134316771	134316930	+	0	NA	intron (NM_001143676, intron 1 of 13)	intron (NM_001143676, intron 1 of 13)	1208	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
134892	chr2	149017201	149017650	+	0	NA	intron (NM_004522, intron 25 of 25)	intron (NM_004522, intron 25 of 25)	-21042	NM_001317005	130576		NM_177964	ENSG00000150556	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
221622	chr8	125700071	125701250	+	0	NA	Intergenic	Intergenic	250537	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
238274	chrX	149466601	149466800	+	0	NA	Intergenic	Intergenic	38606	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
179786	chr5	345201	345430	+	0	NA	intron (NR_165159, intron 4 of 13)	(TG)n|Simple_repeat|Simple_repeat	22705	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
215662	chr8	629411	631430	+	0	NA	intron (NM_001303100, intron 5 of 5)	intron (NM_001303100, intron 5 of 5)	-84640	NM_175075	157695		NM_175075	ENSG00000180190	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
77038	chr15	78760051	78760580	+	0	NA	intron (NM_014272, intron 23 of 23)	intron (NM_014272, intron 23 of 23)	8278	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
101273	chr17	66353051	66353500	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	50662	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
37103	chr11	13282751	13283050	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	5110	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
165496	chr3	100047601	100048180	+	0	NA	intron (NM_182909, intron 1 of 5)	intron (NM_182909, intron 1 of 5)	66623	NM_001042459	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
112674	chr19	7013671	7014030	+	0	NA	Intergenic	Intergenic	-7435	NR_024372	497049		NM_001011541		MARK2P21	-	MARK2 pseudogene 21	pseudo
51842	chr12	53463271	53463430	+	0	NA	intron (NM_001128914, intron 8 of 12)	intron (NM_001128914, intron 8 of 12)	-1118	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
90245	chr17	779371	779930	+	0	NA	intron (NM_016080, intron 1 of 8)	AluSq2|SINE|Alu	2630	NM_001366249	51031		NM_016080	ENSG00000167699	GLOD4	C17orf25|CGI-150|HC6|HC71	glyoxalase domain containing 4	protein-coding
32749	chr10	104317551	104318080	+	0	NA	intron (NM_001272013, intron 1 of 1)	intron (NM_001272013, intron 1 of 1)	-5549	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
109248	chr19	515801	516200	+	0	NA	intron (NM_033513, intron 1 of 1)	AluYa5|SINE|Alu	8503	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
165837	chr3	105845571	105846130	+	0	NA	intron (NR_135807, intron 3 of 20)	intron (NR_135807, intron 3 of 20)	21741	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
193149	chr6	29634571	29634750	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-1477	NM_001470	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
138077	chr2	201909971	201910200	+	0	NA	Intergenic	Intergenic	103506	NM_001261435	65061		NM_139158	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin dependent kinase 15	protein-coding
208079	chr7	56091771	56092330	+	0	NA	intron (NR_047689, intron 1 of 8)	intron (NR_047689, intron 1 of 8)	902	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
229734	chr9	124882051	124882150	+	0	NA	intron (NM_002077, intron 20 of 22)	intron (NM_002077, intron 20 of 22)	19970	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
76061	chr15	72342351	72343030	+	0	NA	3' UTR (NM_001318825, exon 14 of 14)	3' UTR (NM_001318825, exon 14 of 14)	-22533	NM_052840	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
69975	chr14	99885171	99885650	+	0	NA	intron (NM_001375411, intron 4 of 21)	Tigger3a|DNA|TcMar-Tigger	-86012	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
42507	chr11	70269771	70271530	+	0	NA	promoter-TSS (NR_045286)	promoter-TSS (NR_045286)	-40	NM_001378006	8500		NM_003626	ENSG00000131626	PPFIA1	LIP.1|LIP1|LIPRIN	PTPRF interacting protein alpha 1	protein-coding
70363	chr14	101882501	101882900	+	0	NA	intron (NM_178587, intron 3 of 11)	intron (NM_178587, intron 3 of 11)	72837	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
72806	chr15	40077651	40077950	+	0	NA	Intergenic	AluJb|SINE|Alu	28286	NM_001003942	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
178297	chr4	145131051	145131150	+	0	NA	Intergenic	Intergenic	-32559	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
43718	chr11	86045451	86046180	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	23269	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
57260	chr12	121584001	121584730	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-3342	NM_032590	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
205981	chr7	26177251	26177580	+	0	NA	intron (NM_004289, intron 1 of 3)	SVA_A|Retroposon|SVA	23331	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
28966	chr10	63243201	63243730	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSp|SINE|Alu	25758	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
177416	chr4	112308851	112309550	+	0	NA	intron (NM_001253884, intron 1 of 14)	L1PA5|LINE|L1	11831	NM_001102406	80216		NM_025144	ENSG00000073331	ALPK1	8430410J10Rik|LAK|ROSAH	alpha kinase 1	protein-coding
162439	chr3	48441851	48442150	+	0	NA	intron (NM_001329417, intron 3 of 3)	AluJr|SINE|Alu	1743	NM_001329417	51372		NM_015933	ENSG00000232112	TMA7	CCDC72|HSPC016	translation machinery associated 7 homolog	protein-coding
1126	chr1	2134671	2135000	+	0	NA	intron (NM_001033582, intron 1 of 14)	intron (NM_001033582, intron 1 of 14)	30119	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
52063	chr12	54030671	54031630	+	0	NA	TTS (NM_004503)	TTS (NM_004503)	-1900	NM_018953	3222		NM_018953	ENSG00000172789	HOXC5	CP11|HOX3|HOX3D	homeobox C5	protein-coding
82423	chr16	16307101	16307300	+	0	NA	TTS (NR_049832).3	TTS (NR_049832).3	830	NR_128712	103504726		NR_128712	ENSG00000265776	MIR3670-3	hsa-mir-3670-3	microRNA 3670-3	ncRNA
193092	chr6	28880971	28881480	+	0	NA	Intergenic	Intergenic	-15305	NR_104117	414760		NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14	ncRNA
151356	chr21	45741621	45741880	+	0	NA	intron (NM_001382287, intron 2 of 15)	intron (NM_001382287, intron 2 of 15)	-6264	NM_001348243	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
112773	chr19	7469751	7469850	+	0	NA	intron (NM_001367823, intron 27 of 28)	intron (NM_001367823, intron 27 of 28)	19235	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
174469	chr4	39810821	39811990	+	0	NA	Intergenic	AluSc8|SINE|Alu	113269	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
2382	chr1	9419801	9420000	+	0	NA	Intergenic	Intergenic	9016	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
185226	chr5	122774661	122776330	+	0	NA	5' UTR (NM_001278199, exon 1 of 15)	5' UTR (NM_001278199, exon 1 of 15)	415	NM_003100	6643		NM_003100	ENSG00000205302	SNX2	TRG-9	sorting nexin 2	protein-coding
132721	chr2	109134751	109135280	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-4896	NR_029193	100287216		NR_029193		SH3RF3-AS1	-	SH3RF3 antisense RNA 1	ncRNA
57295	chr12	121650921	121651180	+	0	NA	3' UTR (NM_001363685, exon 7 of 7)	3' UTR (NM_001363685, exon 7 of 7)	18604	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
82375	chr16	16024851	16026350	+	0	NA	intron (NM_004996, intron 5 of 30)	intron (NM_004996, intron 5 of 30)	75984	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
140248	chr2	231967071	231967230	+	0	NA	intron (NR_046477, intron 1 of 18)	intron (NR_046477, intron 1 of 18)	5437	NM_152383	129563		NM_152383	ENSG00000144535	DIS3L2	FAM6A|PRLMNS|hDIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein-coding
170461	chr3	185921521	185922180	+	0	NA	intron (NM_001243879, intron 4 of 7)	intron (NM_001243879, intron 4 of 7)	16164	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
5620	chr1	26160251	26160550	+	0	NA	intron (NM_024869, intron 1 of 1)	intron (NM_024869, intron 1 of 1)	1321	NM_024869	79927		NM_024869	ENSG00000197245	FAM110D	GRRP1	family with sequence similarity 110 member D	protein-coding
143660	chr20	31948221	31948480	+	0	NA	intron (NM_030815, intron 3 of 4)	MLT1J|LTR|ERVL-MaLR	3696	NM_030815	81572		NM_030815	ENSG00000088356	PDRG1	C20orf126|PDRG	p53 and DNA damage regulated 1	protein-coding
176289	chr4	87219471	87221200	+	0	NA	promoter-TSS (NM_001292003)	promoter-TSS (NM_001292003)	-67	NM_001292003	57563		NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
165004	chr3	71370821	71371280	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluSx|SINE|Alu	-66279	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
165331	chr3	88031501	88032300	+	0	NA	Intergenic	Intergenic	27096	NM_003663	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
191072	chr6	3414721	3414980	+	0	NA	intron (NM_001286456, intron 2 of 3)	intron (NM_001286456, intron 2 of 3)	30163	NR_104448	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
164890	chr3	71099351	71099650	+	0	NA	intron (NM_001244810, intron 7 of 20)	AluSz|SINE|Alu	31086	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
16035	chr1	152346971	152347340	+	0	NA	intron (NR_103779, intron 2 of 2)	intron (NR_103779, intron 2 of 2)	10087	NR_103779	339400		NR_103778	ENSG00000237975	CCDST	FLG-AS1|LINC02962|lnc-CCDST	cervical cancer associated DHX9 suppressive transcript	ncRNA
62232	chr13	98524251	98524830	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-2415	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
210558	chr7	100342371	100342530	+	0	NA	intron (NR_036570, intron 3 of 16)	intron (NR_036570, intron 3 of 16)	-6143	NR_003613	5379		NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
143589	chr20	31684551	31685630	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-36417	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
137521	chr2	197196621	197197100	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	-1131	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
62454	chr13	99351551	99353350	+	0	NA	TTS (NR_024013)	TTS (NR_024013)	1030	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
117573	chr19	21396651	21397880	+	0	NA	exon (NM_145326, exon 1 of 4)	exon (NM_145326, exon 1 of 4)	132	NM_001076678	284443		NM_145326	ENSG00000196268	ZNF493	-	zinc finger protein 493	protein-coding
182262	chr5	57195551	57196250	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluSx|SINE|Alu	-18174	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
89519	chr16	89173601	89174200	+	0	NA	intron (NM_004933, intron 1 of 13)	intron (NM_004933, intron 1 of 13)	2152	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
170790	chr3	189041151	189041930	+	0	NA	Intergenic	Intergenic	-93901	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
45976	chr11	121464101	121465000	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	12236	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
8834	chr1	43067771	43068630	+	0	NA	Intergenic	Intergenic	-79704	NM_001101376	440585		NM_001101376	ENSG00000186973	CFAP144	FAM183A	cilia and flagella associated protein 144	protein-coding
55707	chr12	107912321	107912850	+	0	NA	Intergenic	Intergenic	-8814	NR_037629	728739		NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
153661	chr22	28822851	28823550	+	0	NA	Intergenic	Intergenic	-22628	NM_005080	7494		NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
152032	chr22	19451801	19452200	+	0	NA	intron (NM_001035247, intron 11 of 11)	HAL1|LINE|L1	-4289	NM_173793	128977		NM_173793	ENSG00000242259	C22orf39	Pants	chromosome 22 open reading frame 39	protein-coding
44949	chr11	116787421	116788930	+	0	NA	promoter-TSS (NM_003904)	promoter-TSS (NM_003904)	-152	NM_001317086	8882		NM_003904	ENSG00000109917	ZPR1	GKAF|ZNF259	ZPR1 zinc finger	protein-coding
215916	chr8	8213101	8213530	+	0	NA	intron (NR_147089, intron 2 of 3)	LTR16A1|LTR|ERVL	14188	NR_147089	105379219		NR_147089		FAM85B	lncRNA-HEIM	family with sequence similarity 85 member B	ncRNA
223459	chr8	143994071	143995030	+	0	NA	Intergenic	Intergenic	4492	NM_000837	2907		NM_000837	ENSG00000178719	GRINA	HNRGW|LFG1|NMDARA1|TMBIM3	glutamate ionotropic receptor NMDA type subunit associated protein 1	protein-coding
153805	chr22	29701151	29701750	+	0	NA	Intergenic	MIR|SINE|MIR	-18553	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
155146	chr22	37664351	37664850	+	0	NA	intron (NM_020315, intron 1 of 1)	intron (NM_020315, intron 1 of 1)	5877	NM_020315	57026		NM_020315	ENSG00000241360	PDXP	CIN|PLP|dJ37E16.5	pyridoxal phosphatase	protein-coding
39795	chr11	61959151	61960180	+	0	NA	intron (NR_134580, intron 8 of 10)	intron (NR_134580, intron 8 of 10)	4430	NM_001363591	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
33323	chr10	115092701	115093800	+	0	NA	promoter-TSS (NM_207303)	promoter-TSS (NM_207303)	-115	NM_001276282	26033		NM_207303	ENSG00000107518	ATRNL1	ALP|bA338L11.1|bA454H24.1	attractin like 1	protein-coding
185077	chr5	116947921	116948180	+	0	NA	Intergenic	Intergenic	-185841	NR_104678	102467223		NR_104678		LINC02214	-	long intergenic non-protein coding RNA 2214	ncRNA
33475	chr10	119072471	119072800	+	0	NA	intron (NM_003750, intron 4 of 21)	AluSz|SINE|Alu	8182	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
159058	chr3	11643601	11644280	+	0	NA	promoter-TSS (NM_001128219)	promoter-TSS (NM_001128219)	-25	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
103293	chr17	77846051	77847500	+	0	NA	Intergenic	Intergenic	37312	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
112120	chr19	5597171	5597530	+	0	NA	intron (NM_014649, intron 13 of 20)	AluJb|SINE|Alu	25426	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
212626	chr7	129344151	129344780	+	0	NA	intron (NM_001130720, intron 1 of 16)	L1ME1|LINE|L1	-23915	NM_001130723	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
39760	chr11	61894921	61895350	+	0	NA	Intergenic	AluSz|SINE|Alu	-3590	NM_021727	3995		NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
139936	chr2	230793901	230795200	+	0	NA	intron (NM_016289, intron 4 of 8)	intron (NM_016289, intron 4 of 8)	-69635	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
218844	chr8	59657351	59658050	+	0	NA	Intergenic	Intergenic	538490	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
2852	chr1	11275201	11275400	+	0	NA	intron (NM_001330350, intron 1 of 1)	MER81|DNA|hAT-Blackjack	2102	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
40049	chr11	62714321	62714580	+	0	NA	3' UTR (NM_001079559, exon 14 of 14)	3' UTR (NM_001079559, exon 14 of 14)	-4831	NR_037949								
138226	chr2	202761551	202761650	+	0	NA	intron (NM_173511, intron 7 of 7)	AluSq2|SINE|Alu	67634	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
179264	chr4	176193701	176194400	+	0	NA	intron (NM_144644, intron 1 of 5)	MER44C|DNA|TcMar-Tigger	1535	NM_144644	132851		NM_144644	ENSG00000150628	SPATA4	CFAP178|FAP178|SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
61656	chr13	73939751	73940350	+	0	NA	intron (NM_007249, intron 3 of 7)	MIR3|SINE|MIR	193879	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
95318	chr17	35588571	35589030	+	0	NA	intron (NM_001282, intron 1 of 20)	intron (NM_001282, intron 1 of 20)	1478	NM_001030006	163		NM_001282	ENSG00000006125	AP2B1	ADTB2|AP105B|AP2-BETA|CLAPB1	adaptor related protein complex 2 subunit beta 1	protein-coding
167872	chr3	134496621	134497050	+	0	NA	intron (NM_001353108, intron 2 of 14)	L1MA4A|LINE|L1	10662	NM_001353125	80254		NM_025180	ENSG00000182923	CEP63	SCKL6	centrosomal protein 63	protein-coding
56283	chr12	112130101	112131000	+	0	NA	exon (NM_006700, exon 2 of 12)	exon (NM_006700, exon 2 of 12)	4990	NM_006700	10906		NM_006700	ENSG00000135148	TRAFD1	FLN29	TRAF-type zinc finger domain containing 1	protein-coding
88122	chr16	81595601	81596200	+	0	NA	intron (NM_030629, intron 1 of 20)	L1MB7|LINE|L1	-15448	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
20478	chr1	198627551	198628450	+	0	NA	Intergenic	Intergenic	-10968	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
213433	chr7	138462821	138463650	+	0	NA	intron (NM_015905, intron 1 of 18)	(TTCC)n|Simple_repeat|Simple_repeat	2976	NM_003852	8805		NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
57486	chr12	122082721	122083280	+	0	NA	intron (NM_014938, intron 1 of 16)	AluJr|SINE|Alu	4244	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
204428	chr7	3116251	3116350	+	0	NA	Intergenic	Intergenic	42273	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
199815	chr6	127518571	127519430	+	0	NA	promoter-TSS (NM_001012279)	promoter-TSS (NM_001012279)	24	NM_001012279	387104		NM_001012279	ENSG00000214338	MTCL3	C6orf174|SOGA3|dJ403A15.3	MTCL family member 3	protein-coding
3942	chr1	18557721	18558180	+	0	NA	Intergenic	Intergenic	-72896	NM_002584	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
175607	chr4	75895571	75896200	+	0	NA	intron (NM_006239, intron 2 of 16)	intron (NM_006239, intron 2 of 16)	6567	NM_006239	5470		NM_006239	ENSG00000156194	PPEF2	PPP7CB	protein phosphatase with EF-hand domain 2	protein-coding
52470	chr12	55964351	55964650	+	0	NA	intron (NM_001200054, intron 1 of 10)	AluJo|SINE|Alu	1542	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
7921	chr1	37488821	37489680	+	0	NA	TTS (NM_001270876)	TTS (NM_001270876)	9020	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
221400	chr8	123506451	123506750	+	0	NA	intron (NM_001242463, intron 4 of 6)	intron (NM_001242463, intron 4 of 6)	25543	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
35647	chr11	1848701	1849100	+	0	NA	Intergenic	Intergenic	-4184	NM_002339	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
85535	chr16	53069621	53069950	+	0	NA	intron (NR_168111, intron 2 of 4)	L1MB3|LINE|L1	14794	NR_168120	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
56076	chr12	110612471	110612800	+	0	NA	Intergenic	AluJb|SINE|Alu	-1494	NM_001319681	79600		NM_024549	ENSG00000204852	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
72281	chr15	30842971	30843330	+	0	NA	Intergenic	Intergenic	25114	NR_072991	390561		NR_072991		HERC2P10	-	HERC2 pseudogene 10	pseudo
14384	chr1	144161151	144161250	+	0	NA	Intergenic	Intergenic	87005	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
175957	chr4	81069651	81070100	+	0	NA	Intergenic	Intergenic	39167	NM_001201	651		NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
195300	chr6	36541851	36542300	+	0	NA	intron (NM_007271, intron 1 of 13)	AluSx1|SINE|Alu	5404	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
63566	chr14	20414971	20415130	+	0	NA	Intergenic	5S|rRNA|rRNA	-1549	NM_001319035	7011		NM_007110	ENSG00000129566	TEP1	TLP1|TP1|TROVE1|VAULT2|p240	telomerase associated protein 1	protein-coding
67764	chr14	73725621	73726030	+	0	NA	intron (NM_001043318, intron 8 of 11)	intron (NM_001043318, intron 8 of 11)	-11441	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
143948	chr20	32793201	32793550	+	0	NA	intron (NM_175849, intron 9 of 19)	AluSz|SINE|Alu	13523	NM_175850	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
59058	chr13	20711121	20711830	+	0	NA	intron (NM_001385224, intron 1 of 1)	MSTD|LTR|ERVL-MaLR	7776	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
193176	chr6	29719021	29719750	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-3955	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
95582	chr17	37047471	37048000	+	0	NA	intron (NM_012138, intron 11 of 11)	intron (NM_012138, intron 11 of 11)	13990	NR_036056	100422969		NR_036056	ENSG00000276326	MIR2909	-	microRNA 2909	ncRNA
208046	chr7	55969551	55969850	+	0	NA	intron (NM_001202469, intron 1 of 7)	intron (NM_001202469, intron 1 of 7)	5115	NM_001202469	2631		NM_001483	ENSG00000146729	NIPSNAP2	GBAS	nipsnap homolog 2	protein-coding
124975	chr2	8839151	8839530	+	0	NA	Intergenic	Intergenic	-1727	NM_001348738	57498		NM_020738	ENSG00000134313	KIDINS220	ARMS|SINO|VENARG	kinase D interacting substrate 220	protein-coding
22015	chr1	209895701	209895900	+	0	NA	Intergenic	LTR39|LTR|ERV1	-42374	NM_001256006	255928		NM_153262	ENSG00000143469	SYT14	SCAR11|sytXIV	synaptotagmin 14	protein-coding
86149	chr16	57748801	57749200	+	0	NA	intron (NM_005886, intron 4 of 19)	intron (NM_005886, intron 4 of 19)	13230	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
197925	chr6	89609871	89610400	+	0	NA	intron (NM_014942, intron 5 of 15)	intron (NM_014942, intron 5 of 15)	28350	NR_028493	57226		NM_020466	ENSG00000083099	LYRM2	DJ122O8.2	LYR motif containing 2	protein-coding
225131	chr9	33597321	33597830	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-26650	NR_003573	304		NR_003573		ANXA2P2	ANX2L2|ANX2P2|LPC2B	annexin A2 pseudogene 2	pseudo
231326	chr9	130131101	130131980	+	0	NA	intron (NM_001136557, intron 19 of 19)	intron (NM_001136557, intron 19 of 19)	12679	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
73612	chr15	44563921	44564380	+	0	NA	intron (NM_025137, intron 39 of 39)	AluSx1|SINE|Alu	27003	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
74862	chr15	63547671	63548380	+	0	NA	intron (NR_046342, intron 4 of 15)	AluSx3|SINE|Alu	43432	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
118829	chr19	38567471	38567630	+	0	NA	intron (NM_000540, intron 92 of 105)	L2b|LINE|L2	-28797	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
37078	chr11	12698001	12698200	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	23679	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
48956	chr12	12812721	12814180	+	0	NA	exon (NM_016355, exon 1 of 12)	exon (NM_016355, exon 1 of 12)	104	NM_201224	51202		NM_016355	ENSG00000213782	DDX47	E4-DBP|HQ0256|MSTP162|RRP3	DEAD-box helicase 47	protein-coding
13800	chr1	117534951	117535730	+	0	NA	Intergenic	Intergenic	70430	NR_121626	100996263		NR_121626	ENSG00000236866	TENT5C-DT	-	TENT5C divergent transcript	ncRNA
134725	chr2	144523471	144523630	+	0	NA	TTS (NR_136320)	TTS (NR_136320)	894	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
4731	chr1	23354301	23354500	+	0	NA	Intergenic	L2a|LINE|L2	-10116	NM_001102397	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
133394	chr2	118223771	118224530	+	0	NA	Intergenic	Intergenic	-37764	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
128594	chr2	60948201	60948400	+	0	NA	intron (NM_001322127, intron 14 of 16)	intron (NM_001322127, intron 14 of 16)	66726	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
117240	chr19	19430571	19430980	+	0	NA	intron (NM_001384517, intron 2 of 12)	intron (NM_001384517, intron 2 of 12)	-4288	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
36488	chr11	6320851	6321150	+	0	NA	promoter-TSS (NM_145040)	promoter-TSS (NM_145040)	-499	NM_145040	112464		NM_145040	ENSG00000170955	CAVIN3	HSRBC|PRKCDBP|SRBC|cavin-3	caveolae associated protein 3	protein-coding
141969	chr20	1326671	1326830	+	0	NA	promoter-TSS (NM_001199784)	promoter-TSS (NM_001199784)	-881	NM_001199784	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
25586	chr10	8041251	8041650	+	0	NA	Intergenic	Intergenic	11041	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
13461	chr1	114513671	114513830	+	0	NA	Intergenic	Charlie2a|DNA|hAT-Charlie	-2547	NM_033020	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
79193	chr16	328971	329330	+	0	NA	intron (NM_181050, intron 2 of 9)	AluSg|SINE|Alu	23573	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
9808	chr1	53836151	53836580	+	0	NA	intron (NM_018087, intron 1 of 17)	AluSz6|SINE|Alu	1931	NM_018087	55706		NM_018087	ENSG00000058804	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
16342	chr1	154272001	154273780	+	0	NA	intron (NM_001018837, intron 1 of 6)	intron (NM_001018837, intron 1 of 6)	261	NM_006118	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
163788	chr3	52395551	52396530	+	0	NA	intron (NM_015512, intron 70 of 77)	AluSx3|SINE|Alu	13968	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
2683	chr1	10562051	10562250	+	0	NA	intron (NM_004565, intron 3 of 8)	AluJr4|SINE|Alu	87200	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
193568	chr6	30650601	30651200	+	0	NA	intron (NM_001109938, intron 2 of 5).6	AluSx|SINE|Alu	3767	NM_001161376	221545		NM_145029	ENSG00000204564	C6orf136	-	chromosome 6 open reading frame 136	protein-coding
7679	chr1	35804521	35805180	+	0	NA	Intergenic	Intergenic	-2786	NR_146062	192670		NM_017629	ENSG00000134698	AGO4	EIF2C4	argonaute RISC component 4	protein-coding
147438	chr20	58909171	58909330	+	0	NA	intron (NM_001077488, intron 7 of 12)	intron (NM_001077488, intron 7 of 12)	17087	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
119506	chr19	40512421	40513130	+	0	NA	exon (NM_020971, exon 14 of 36)	exon (NM_020971, exon 14 of 36)	-17716	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
196712	chr6	44969451	44969750	+	0	NA	intron (NM_001350327, intron 5 of 9)	intron (NM_001350327, intron 5 of 9)	228170	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
85633	chr16	55258051	55258230	+	0	NA	Intergenic	Intergenic	-66063	NM_024335	79190		NM_024335	ENSG00000159387	IRX6	IRX-3|IRX7|IRXB3	iroquois homeobox 6	protein-coding
187811	chr5	146565821	146566350	+	0	NA	Intergenic	Intergenic	-49895	NM_194251	134391		NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|GPCR-2037|PGR7	G protein-coupled receptor 151	protein-coding
88	chr1	353021	353480	+	0	NA	Intergenic	MER4A1|LTR|ERV1	98428	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
217943	chr8	38150671	38151130	+	0	NA	promoter-TSS (NM_000349)	promoter-TSS (NM_000349)	52	NM_000349	6770		NM_000349	ENSG00000147465	STAR	STARD1	steroidogenic acute regulatory protein	protein-coding
65093	chr14	39668501	39668700	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-236100	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
75297	chr15	65189021	65189780	+	0	NA	Intergenic	Intergenic	-4058	NM_006660	10845		NM_006660	ENSG00000166855	CLPX	EPP2	caseinolytic mitochondrial matrix peptidase chaperone subunit X	protein-coding
176937	chr4	102867071	102867230	+	0	NA	intron (NM_181890, intron 1 of 7)	intron (NM_181890, intron 1 of 7)	1743	NM_181893	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
235665	chrX	48572971	48573130	+	0	NA	Intergenic	Intergenic	-1434	NM_006743	5935		NM_006743	ENSG00000102317	RBM3	IS1-RNPL|RNPL	RNA binding motif protein 3	protein-coding
208797	chr7	73600801	73601200	+	0	NA	intron (NR_134541, intron 7 of 15)	intron (NR_134541, intron 7 of 15)	-22421	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
138799	chr2	216119201	216119400	+	0	NA	intron (NM_021141, intron 5 of 20)	intron (NM_021141, intron 5 of 20)	9952	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
187536	chr5	142716821	142717180	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-18930	NM_001257205	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
152084	chr22	19760421	19761850	+	0	NA	exon (NM_001379200, exon 1 of 7)	exon (NM_001379200, exon 1 of 7)	357	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
114895	chr19	13912271	13912430	+	0	NA	exon (NM_017721, exon 3 of 29)	exon (NM_017721, exon 3 of 29)	6149	NM_017721	54862		NM_017721	ENSG00000132024	CC2D1A	Aki-1|FREUD-1|Freud-1/Aki1|Lgd2|MRT3|TAPE	coiled-coil and C2 domain containing 1A	protein-coding
3592	chr1	16226771	16227200	+	0	NA	Intergenic	CpG	10198	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
154815	chr22	37021921	37022600	+	0	NA	intron (NM_021126, intron 1 of 2)	intron (NM_021126, intron 1 of 2)	-2077	NM_001270483	7263		NM_003312	ENSG00000128311	TST	RDS	thiosulfate sulfurtransferase	protein-coding
235801	chrX	49186001	49186980	+	0	NA	promoter-TSS (NM_006150)	promoter-TSS (NM_006150)	-117	NM_006150	4007		NM_006150	ENSG00000012211	PRICKLE3	LMO6|LOAM|LOAS|Pk3	prickle planar cell polarity protein 3	protein-coding
2716	chr1	10653571	10654350	+	0	NA	exon (NM_001079843, exon 11 of 21)	exon (NM_001079843, exon 11 of 21)	142686	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
18329	chr1	161188951	161189050	+	0	NA	TTS (NM_001320336)	TTS (NM_001320336)	-8417	NM_001377298	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
88374	chr16	84597521	84598800	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	19918	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
162125	chr3	46938021	46938300	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	38341	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
209286	chr7	75983421	75983680	+	0	NA	exon (NM_001367562, exon 10 of 17)	exon (NM_001367562, exon 10 of 17)	11045	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
226151	chr9	63707121	63707580	+	0	NA	Intergenic	GSATII|Satellite|centr	-105591	NR_146625	203274		NR_146625		LINC00537	-	long intergenic non-protein coding RNA 537	ncRNA
216104	chr8	11123871	11125080	+	0	NA	intron (NR_138153, intron 1 of 2)	intron (NR_138153, intron 1 of 2)	-57386	NR_134308	101929269		NR_134308	ENSG00000254839	LOC101929269	-	uncharacterized LOC101929269	ncRNA
16708	chr1	155232101	155232300	+	0	NA	Intergenic	Intergenic	-4666	NR_002188	2630		NR_002188	ENSG00000291137	GBA1LP	Beta-GC|GBA|GBAP|GBAP1|GC|GLUC	glucosylceramidase beta 1 like, pseudogene	pseudo
157113	chr22	42640871	42641030	+	0	NA	promoter-TSS (NM_001165877)	promoter-TSS (NM_001165877)	-349	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
160994	chr3	37250501	37250700	+	0	NA	intron (NM_001172713, intron 1 of 22)	L2c|LINE|L2	-6405	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
117193	chr19	19368671	19368830	+	0	NA	Intergenic	AluY|SINE|Alu	-17093	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
148060	chr20	63256071	63256430	+	0	NA	non-coding (NR_024389, exon 1 of 1)	non-coding (NR_024389, exon 1 of 1)	-1787	NM_152864	128414		NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	sodium/potassium transporting ATPase interacting 4	protein-coding
5452	chr1	25614321	25615080	+	0	NA	Intergenic	Intergenic	-2091	NM_020379	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
191549	chr6	11575521	11575800	+	0	NA	3' UTR (NM_001100829, exon 3 of 3)	3' UTR (NM_001100829, exon 3 of 3)	37911	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
80648	chr16	2998121	2998950	+	0	NA	promoter-TSS (NR_110947)	promoter-TSS (NR_110947)	-420	NR_110948	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
89557	chr16	89246971	89248650	+	0	NA	Intergenic	CpG	30107	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
142204	chr20	3041151	3041250	+	0	NA	Intergenic	AluSx|SINE|Alu	-2422	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
227741	chr9	93074451	93074750	+	0	NA	intron (NM_001287005, intron 2 of 5)	intron (NM_001287005, intron 2 of 5)	15899	NM_001287007	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
220329	chr8	98945301	98946230	+	0	NA	intron (NM_053001, intron 1 of 3)	intron (NM_053001, intron 1 of 3)	1323	NM_001142462	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
236066	chrX	56563251	56565800	+	0	NA	exon (NM_013444, exon 1 of 1)	exon (NM_013444, exon 1 of 1)	898	NM_013444	29978		NM_013444	ENSG00000188021	UBQLN2	ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2	ubiquilin 2	protein-coding
93571	chr17	19100371	19100930	+	0	NA	Intergenic	L1ME4b|LINE|L1	11189	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
102401	chr17	75592501	75593030	+	0	NA	exon (NM_001309242, exon 8 of 63)	exon (NM_001309242, exon 8 of 63)	4707	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
128402	chr2	55175571	55176030	+	0	NA	non-coding (NR_148543, exon 6 of 6)	non-coding (NR_148543, exon 6 of 6)	-37969	NM_001321904	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
131697	chr2	97738751	97738850	+	0	NA	intron (NM_207519, intron 5 of 5)	intron (NM_207519, intron 5 of 5)	5500	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
224827	chr9	26953971	26954680	+	0	NA	intron (NM_001099222, intron 1 of 19)	MER57E2|LTR|ERV1	1982	NR_121605	101929602		NR_121605	ENSG00000234676	IFT74-AS1	-	IFT74 antisense RNA 1	ncRNA
201699	chr6	149696321	149696980	+	0	NA	intron (NM_001270519, intron 2 of 3)	intron (NM_001270519, intron 2 of 3)	19775	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
188231	chr5	150846001	150847650	+	0	NA	5' UTR (NM_001346557, exon 1 of 4)	5' UTR (NM_001346557, exon 1 of 4)	302	NM_001145805	345611		NM_001145805	ENSG00000237693	IRGM	IBD19|IFI1|IRGM1|LRG-47|LRG47	immunity related GTPase M	protein-coding
230638	chr9	128658571	128659050	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluJb|SINE|Alu	-1960	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
158061	chr22	49953521	49953780	+	0	NA	Intergenic	Intergenic	-7122	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
189921	chr5	177371751	177371850	+	0	NA	intron (NM_006480, intron 14 of 14)	intron (NM_006480, intron 14 of 14)	-12634	NM_001167579	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
42731	chr11	72694521	72694830	+	0	NA	intron (NR_161388, intron 23 of 29)	L2a|LINE|L2	-5799	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
92267	chr17	8056101	8056850	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	17416	NM_001039131	247		NM_001141	ENSG00000179593	ALOX15B	15-LOX-2	arachidonate 15-lipoxygenase type B	protein-coding
182360	chr5	59931721	59931800	+	0	NA	intron (NM_001364600, intron 3 of 7)	AluYm1|SINE|Alu	-38034	NM_001104631	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
98669	chr17	47842971	47843830	+	0	NA	Intergenic	Intergenic	-2127	NM_138355	90507		NM_138355	ENSG00000141295	SCRN2	Ses2	secernin 2	protein-coding
166678	chr3	120344271	120344830	+	0	NA	intron (NM_001099678, intron 1 of 3)	intron (NM_001099678, intron 1 of 3)	4804	NM_001099678	116064		NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
128174	chr2	53587151	53587480	+	0	NA	Intergenic	L1PA3|LINE|L1	-180468	NM_001346127	494143		NM_001008708	ENSG00000143942	CHAC2	GCG1	ChaC glutathione specific gamma-glutamylcyclotransferase 2	protein-coding
160129	chr3	20043321	20044730	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	3579	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
98003	chr17	45309401	45309800	+	0	NA	intron (NM_003954, intron 1 of 15)	intron (NM_003954, intron 1 of 15)	7420	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
74302	chr15	58182651	58182750	+	0	NA	intron (NM_020980, intron 5 of 5)	intron (NM_020980, intron 5 of 5)	44319	NM_001320635	366		NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
220023	chr8	90648471	90649080	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-2692	NM_001008495	169200		NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
95026	chr17	32462401	32462700	+	0	NA	intron (NM_001270482, intron 3 of 12)	intron (NM_001270482, intron 3 of 12)	18040	NM_001270482	5717		NM_002815	ENSG00000108671	PSMD11	Rpn6|S9|p44.5	proteasome 26S subunit, non-ATPase 11	protein-coding
13360	chr1	113870621	113871030	+	0	NA	intron (NM_012411, intron 1 of 18)	AluJr|SINE|Alu	887	NM_015967	26191		NM_012411	ENSG00000134242	PTPN22	LYP|LYP1|LYP2|PEP|PTPN22.5|PTPN22.6|PTPN8	protein tyrosine phosphatase non-receptor type 22	protein-coding
17646	chr1	157155821	157156530	+	0	NA	Intergenic	Intergenic	-17584	NM_005240	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
49476	chr12	25197521	25197780	+	0	NA	intron (NM_001001660, intron 1 of 2)	AluJb|SINE|Alu	2413	NM_001001660	144363		NM_001001660	ENSG00000205707	ETFRF1	LYRM5	electron transfer flavoprotein regulatory factor 1	protein-coding
23537	chr1	229194021	229194680	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-19549	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
46458	chr11	128201171	128201730	+	0	NA	Intergenic	Intergenic	-7316	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
166351	chr3	112979201	112979780	+	0	NA	Intergenic	Intergenic	-4387	NM_170780	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
47594	chr12	4855371	4856080	+	0	NA	Intergenic	Intergenic	46549	NM_002235	3742		NM_002235	ENSG00000151079	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel subfamily A member 6	protein-coding
74971	chr15	63835301	63835580	+	0	NA	Intergenic	Intergenic	-1492	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
43796	chr11	86301971	86302930	+	0	NA	exon (NM_016401, exon 1 of 5)	exon (NM_016401, exon 1 of 5)	210	NR_136324	51501		NM_016401	ENSG00000149196	HIKESHI	C11orf73|HLD13|HSPC138|HSPC179|L7RN6|OPI10	heat shock protein nuclear import factor hikeshi	protein-coding
203990	chr7	1744321	1744580	+	0	NA	5' UTR (NM_001128636, exon 3 of 3)	5' UTR (NM_001128636, exon 3 of 3)	-2140	NR_120510	101927125		NR_120508	ENSG00000236081	ELFN1-AS1	MYCLo-2	ELFN1 antisense RNA 1	ncRNA
236098	chrX	56800501	56801280	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-63306	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
71946	chr15	23046451	23047430	+	0	NA	Intergenic	Intergenic	-7267	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
222325	chr8	133517971	133518350	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	53727	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
140316	chr2	232505271	232505430	+	0	NA	Intergenic	MIR|SINE|MIR	-15038	NM_001195129	646960		NM_001195129	ENSG00000237412	PRSS56	MCOP6	serine protease 56	protein-coding
205161	chr7	7247721	7248200	+	0	NA	3' UTR (NM_020156, exon 4 of 4)	3' UTR (NM_020156, exon 4 of 4)	-7194	NR_108073	101927354		NR_108073	ENSG00000230825	LINC03016	-	long intergenic non-protein coding RNA 3016	ncRNA
224545	chr9	19372171	19373000	+	0	NA	non-coding (NR_073201, exon 32 of 32)	non-coding (NR_073201, exon 32 of 32)	7651	NM_001010	6194		NM_001010	ENSG00000137154	RPS6	S6|eS6	ribosomal protein S6	protein-coding
117342	chr19	19530621	19531230	+	0	NA	intron (NM_198537, intron 2 of 6)	intron (NM_198537, intron 2 of 6)	2014	NM_198537	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
216472	chr8	19717171	19718000	+	0	NA	intron (NM_001354475, intron 1 of 9)	L1MC3|LINE|L1	-34824	NR_024040	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
181207	chr5	39161801	39162030	+	0	NA	intron (NM_199335, intron 2 of 17)	L1MB8|LINE|L1	57648	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
85354	chr16	50215771	50215930	+	0	NA	intron (NM_001040284, intron 4 of 12)	intron (NM_001040284, intron 4 of 12)	-50701	NM_001114	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
133858	chr2	128319971	128320750	+	0	NA	Intergenic	Intergenic	-1492	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
19723	chr1	181103451	181103830	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	14940	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
13395	chr1	113948221	113948580	+	0	NA	intron (NM_198268, intron 2 of 15)	AluJr|SINE|Alu	-2745	NM_198269	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
147867	chr20	62821321	62821780	+	0	NA	intron (NM_001853, intron 7 of 31)	intron (NM_001853, intron 7 of 31)	4500	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
93620	chr17	19157671	19157830	+	0	NA	intron (NR_160286, intron 3 of 3).2	L2a|LINE|L2	4874	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
38986	chr11	47591521	47591880	+	0	NA	intron (NM_031909, intron 1 of 1)	intron (NM_031909, intron 1 of 1)	2711	NM_031909	114900		NM_031909	ENSG00000172247	C1QTNF4	CTRP4|ZACRP4	C1q and TNF related 4	protein-coding
139005	chr2	218366521	218366780	+	0	NA	TTS (NR_110573)	TTS (NR_110573)	1252	NR_110573	101928513		NR_110573	ENSG00000225062	CATIP-AS1	-	CATIP antisense RNA 1	ncRNA
146923	chr20	51631201	51631800	+	0	NA	intron (NM_006045, intron 15 of 27)	intron (NM_006045, intron 15 of 27)	-68661	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
87562	chr16	72009801	72010000	+	0	NA	intron (NM_001361, intron 1 of 8)	AluSg|SINE|Alu	1156	NM_001361	1723		NM_001361	ENSG00000102967	DHODH	DHOdehase|POADS|URA1	dihydroorotate dehydrogenase (quinone)	protein-coding
1612	chr1	3673301	3674280	+	0	NA	intron (NM_001204185, intron 1 of 12)	intron (NM_001204185, intron 1 of 12)	-16882	NM_001204190	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
69229	chr14	92775251	92775550	+	0	NA	Intergenic	Intergenic	-18905	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
25022	chr10	3652821	3653150	+	0	NA	intron (NR_131187, intron 1 of 1)	intron (NR_131187, intron 1 of 1)	132224	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
191988	chr6	16182801	16183900	+	0	NA	Intergenic	Intergenic	41794	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
19188	chr1	172182751	172183250	+	0	NA	intron (NM_001350204, intron 15 of 20)	intron (NM_001350204, intron 15 of 20)	-38165	NR_103486	100628315		NR_038397		DNM3OS	DNM3-AS1|MIR199A2HG	DNM3 opposite strand/antisense RNA	ncRNA
112397	chr19	6110191	6111880	+	0	NA	promoter-TSS (NM_134433)	promoter-TSS (NM_134433)	-535	NM_134433	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
152317	chr22	20359721	20360000	+	0	NA	Intergenic	CpG	20947	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
167245	chr3	128493821	128494080	+	0	NA	promoter-TSS (NM_032638)	promoter-TSS (NM_032638)	-749	NM_032638	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
36215	chr11	3513871	3514430	+	0	NA	intron (NR_126335, intron 2 of 2)	HERVS71-int|LTR|ERV1	-37077	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
76373	chr15	74602601	74603000	+	0	NA	Intergenic	Intergenic	-5572	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
229850	chr9	126320321	126320680	+	0	NA	Intergenic	Intergenic	-6329	NM_033446	89853		NM_033446	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
76425	chr15	74788601	74789980	+	0	NA	promoter-TSS (NR_039738)	promoter-TSS (NR_039738)	-533	NR_039738	100616183		NR_039738	ENSG00000264386	MIR4513	-	microRNA 4513	ncRNA
74748	chr15	63213151	63213250	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	23594	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
1281	chr1	2323321	2323580	+	0	NA	intron (NM_024848, intron 13 of 13)	intron (NM_024848, intron 13 of 13)	29211	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
172041	chr4	1004221	1004730	+	0	NA	TTS (NM_000203)	TTS (NM_000203)	4765	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
70071	chr14	100149901	100150300	+	0	NA	intron (NM_206918, intron 1 of 2)	intron (NM_206918, intron 1 of 2)	9545	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
157736	chr22	46593501	46594330	+	0	NA	intron (NM_001366660, intron 1 of 17)	AluSx|SINE|Alu	16827	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
109316	chr19	581571	582750	+	0	NA	intron (NM_198591, intron 4 of 6)	intron (NM_198591, intron 4 of 6)	-7721	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
193596	chr6	30719621	30720600	+	0	NA	promoter-TSS (NM_178014).2	promoter-TSS (NM_178014).2	-242	NM_001293213	203068		NM_178014	ENSG00000196230	TUBB	CDCBM6|CSCSC1|M40|OK/SW-cl.56|TUBB1|TUBB5	tubulin beta class I	protein-coding
103140	chr17	77400301	77401100	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	-3646	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
52371	chr12	55681721	55682180	+	0	NA	exon (NM_152637, exon 1 of 2)	exon (NM_152637, exon 1 of 2)	214	NM_152637	196410		NM_152637	ENSG00000170439	TMT1B	ALDI|METTL7B	thiol methyltransferase 1B	protein-coding
435	chr1	1107351	1107650	+	0	NA	intron (NM_017891, intron 1 of 9)	LTR12C|LTR|ERV1	8589	NM_017891	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
161274	chr3	39280021	39280730	+	0	NA	promoter-TSS (NM_001171172)	promoter-TSS (NM_001171172)	64	NM_001171172	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
87291	chr16	70062001	70062800	+	0	NA	intron (NR_003610, intron 1 of 25)	AluJb|SINE|Alu	3548	NR_003610	283970		NM_199134	ENSG00000196696	PDXDC2P-NPIPB14P	-	PDXDC2P-NPIPB14P readthrough, transcribed pseudogene	pseudo
203646	chr7	979721	980800	+	0	NA	intron (NR_156697, intron 4 of 4)	MLT1K|LTR|ERVL-MaLR	-2921	NM_017781	54905		NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding
19881	chr1	183630821	183631480	+	0	NA	intron (NM_005717, intron 2 of 3)	L2a|LINE|L2	4633	NM_005717	10092		NM_005717	ENSG00000162704	ARPC5	ARC16|IMD113|dJ127C7.3|p16-Arc	actin related protein 2/3 complex subunit 5	protein-coding
119887	chr19	41543651	41544400	+	0	NA	Intergenic	Intergenic	-5493	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
194058	chr6	31857851	31857950	+	0	NA	3' UTR (NM_000434, exon 6 of 6).3	3' UTR (NM_000434, exon 6 of 6).3	4921	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
6693	chr1	29171421	29171880	+	0	NA	intron (NM_005626, intron 1 of 5)	intron (NM_005626, intron 1 of 5)	10250	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
198918	chr6	110181601	110181800	+	0	NA	intron (NM_015891, intron 1 of 14)	L2c|LINE|L2	1273	NM_015891	51362		NM_015891	ENSG00000168438	CDC40	EHB3|PCH15|PRP17|PRPF17	cell division cycle 40	protein-coding
52902	chr12	57219851	57220430	+	0	NA	intron (NM_007224, intron 1 of 1)	intron (NM_007224, intron 1 of 1)	3346	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
195202	chr6	36114801	36116250	+	0	NA	Intergenic	AluJb|SINE|Alu	-14988	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
216565	chr8	21910571	21911400	+	0	NA	intron (NM_001317800, intron 1 of 2)	intron (NM_001317800, intron 1 of 2)	2705	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
120344	chr19	43574821	43576600	+	0	NA	promoter-TSS (NM_006297)	promoter-TSS (NM_006297)	-183	NM_006297	7515		NM_006297	ENSG00000073050	XRCC1	RCC|SCAR26	X-ray repair cross complementing 1	protein-coding
152536	chr22	20984421	20984900	+	0	NA	intron (NM_006767, intron 2 of 20)	intron (NM_006767, intron 2 of 20)	2363	NM_006767	8216		NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|NS2|SWNTS2	leucine zipper like post translational regulator 1	protein-coding
36654	chr11	8016021	8016950	+	0	NA	promoter-TSS (NR_125366)	promoter-TSS (NR_125366)	24	NR_125366	103581031		NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility 23	ncRNA
7088	chr1	32064421	32064850	+	0	NA	Intergenic	AluSp|SINE|Alu	-7396	NM_001319677	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
29780	chr10	72270651	72271280	+	0	NA	Intergenic	Intergenic	-2959	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
110430	chr19	1970851	1970950	+	0	NA	intron (NM_001319, intron 2 of 11)	intron (NM_001319, intron 2 of 11)	-16351	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
28837	chr10	62388471	62388630	+	0	NA	exon (NM_014951, exon 3 of 5)	exon (NM_014951, exon 3 of 5)	-13423	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
96087	chr17	39611321	39611780	+	0	NA	Intergenic	Intergenic	-3630	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
180898	chr5	34182671	34183630	+	0	NA	intron (NR_146599, intron 2 of 11)	AluSc8|SINE|Alu	-6431	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
187084	chr5	140182401	140182800	+	0	NA	intron (NM_032412, intron 1 of 2)	intron (NM_032412, intron 1 of 2)	7412	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
18099	chr1	160694251	160694350	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK-int|LTR|ERVK	17522	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
95158	chr17	35117171	35117330	+	0	NA	intron (NM_001142571, intron 2 of 9)	L2c|LINE|L2	2508	NM_133629	5892		NM_002878	ENSG00000185379	RAD51D	BROVCA4|R51H3|RAD51L3|TRAD	RAD51 paralog D	protein-coding
112891	chr19	7627851	7628380	+	0	NA	intron (NM_020196, intron 2 of 18)	intron (NM_020196, intron 2 of 18)	1430	NM_020196	56949		NM_020196	ENSG00000076924	XAB2	HCNP|HCRN|NTC90|SYF1	XPA binding protein 2	protein-coding
152811	chr22	21857251	21857800	+	0	NA	intron (NM_138957, intron 1 of 7)	MER47A|DNA|TcMar-Tigger	10120	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
78797	chr15	99472751	99473450	+	0	NA	Intergenic	Intergenic	-92317	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
234708	chrX	20500121	20500430	+	0	NA	Intergenic	Intergenic	-233366	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
109537	chr19	863681	864580	+	0	NA	TTS (NM_001317335)	TTS (NM_001317335)	4466	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
163294	chr3	50333651	50334580	+	0	NA	intron (NM_001206957, intron 1 of 4)	intron (NM_001206957, intron 1 of 4)	3335	NM_170713	11186		NM_007182	ENSG00000068028	RASSF1	123F2|NORE2A|RASSF1A|RDA32|REH3P21	Ras association domain family member 1	protein-coding
24207	chr1	236099901	236100200	+	0	NA	Intergenic	Intergenic	-34960	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
142810	chr20	16434251	16434350	+	0	NA	intron (NM_024704, intron 12 of 25)	intron (NM_024704, intron 12 of 25)	139148	NM_024704	55614		NM_024704	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
216	chr1	822821	823580	+	0	NA	Intergenic	Intergenic	4322	NR_024321	79854		NM_024796		LINC00115	NCRNA00115	long intergenic non-protein coding RNA 115	ncRNA
97477	chr17	43775821	43776850	+	0	NA	intron (NM_004090, intron 1 of 2)	MIRc|SINE|MIR	2642	NM_004090	1845		NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
191576	chr6	12010551	12012400	+	0	NA	promoter-TSS (NM_002114)	promoter-TSS (NM_002114)	-837	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
42120	chr11	67612551	67612850	+	0	NA	TTS (NM_007103)	TTS (NM_007103)	2964	NR_033791	390213		NR_033791		DOC2GP	-	double C2 domain gamma, pseudogene	pseudo
190673	chr5	181263501	181263700	+	0	NA	intron (NR_102762, intron 1 of 2)	MER112|DNA|hAT-Charlie	2388	NR_102760	100507602		NR_102759	ENSG00000248275	TRIM52-AS1	-	TRIM52 antisense RNA 1 (head to head)	ncRNA
95851	chr17	38823671	38823830	+	0	NA	intron (NM_017748, intron 1 of 9)	(CCCT)n|Simple_repeat|Simple_repeat	1571	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
91859	chr17	7227401	7228300	+	0	NA	intron (NM_004422, intron 10 of 14)	intron (NM_004422, intron 10 of 14)	-4471	NR_029896	442898		NR_029896	ENSG00000199053	MIR324	MIRN324|hsa-mir-324|mir-324	microRNA 324	ncRNA
1907	chr1	6458601	6458800	+	0	NA	intron (NM_031475, intron 12 of 12)	AluSx|SINE|Alu	7473	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
119381	chr19	40219371	40219530	+	0	NA	Intergenic	L2b|LINE|L2	-1051	NM_152479	148014		NM_152479	ENSG00000174521	TTC9B	-	tetratricopeptide repeat domain 9B	protein-coding
73919	chr15	50877851	50877950	+	0	NA	Intergenic	AluSz|SINE|Alu	-30783	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
166857	chr3	123421721	123422100	+	0	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	-5568	NM_001199642	111		NM_183357	ENSG00000173175	ADCY5	AC5|DSKOD|FDFM	adenylate cyclase 5	protein-coding
157360	chr22	44695651	44696430	+	0	NA	intron (NM_001198721, intron 2 of 9)	AluSx|SINE|Alu	-6158	NM_181334	553158		NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
114722	chr19	13170921	13171680	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	20889	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
108088	chr18	61581821	61582110	+	0	NA	Intergenic	Intergenic	-166211	NR_103449	100996669		NR_103449		LINC01544	-	long intergenic non-protein coding RNA 1544	ncRNA
4715	chr1	23201051	23201150	+	0	NA	intron (NM_000864, intron 1 of 1)	MLT1O|LTR|ERVL-MaLR	16402	NM_000864	3352		NM_000864	ENSG00000179546	HTR1D	5-HT1D|HT1DA|HTR1DA|HTRL|RDC4	5-hydroxytryptamine receptor 1D	protein-coding
104405	chr17	81050951	81051450	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	-6534	NM_001385147	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
41637	chr11	66478351	66478450	+	0	NA	intron (NR_120586, intron 1 of 3)	intron (NR_120586, intron 1 of 3)	1849	NR_120586	101928069		NR_120586	ENSG00000255517	DPP3-DT	-	DPP3 divergent transcript	ncRNA
105003	chr17	82025601	82025800	+	0	NA	intron (NM_144999, intron 5 of 16)	intron (NM_144999, intron 5 of 16)	2395	NM_144999	201255		NM_144999	ENSG00000169683	LRRC45	-	leucine rich repeat containing 45	protein-coding
115519	chr19	15429551	15430050	+	0	NA	exon (NM_001330395, exon 3 of 8)	exon (NM_001330395, exon 3 of 8)	2961	NM_001330395	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
155599	chr22	38770521	38770780	+	0	NA	Intergenic	Intergenic	-14652	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
128620	chr2	61193701	61194700	+	0	NA	intron (NM_014709, intron 75 of 79)	intron (NM_014709, intron 75 of 79)	16782	NR_152212	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
140537	chr2	233248801	233249530	+	0	NA	Intergenic	L2b|LINE|L2	-2406	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
183424	chr5	78357671	78358030	+	0	NA	TTS (NR_105014)	TTS (NR_105014)	2691	NR_105014	728769		NR_105014	ENSG00000245556	SCAMP1-AS1	-	SCAMP1 antisense RNA 1	ncRNA
46810	chr11	130315611	130316750	+	0	NA	intron (NR_148980, intron 1 of 6)	intron (NR_148980, intron 1 of 6)	1187	NR_148980	646383		NM_001039787	ENSG00000175773	ZBTB44-DT	-	ZBTB44 divergent transcript	ncRNA
228126	chr9	96654001	96654900	+	0	NA	intron (NM_153698, intron 2 of 5)	intron (NM_153698, intron 2 of 5)	867	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
201970	chr6	152184321	152185680	+	0	NA	intron (NM_033071, intron 127 of 145)	intron (NM_033071, intron 127 of 145)	378	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
488	chr1	1169921	1170530	+	0	NA	Intergenic	Intergenic	1220	NR_029957	554210		NR_029957	ENSG00000198976	MIR429	MIRN429|hsa-mir-429|mir-429	microRNA 429	ncRNA
17428	chr1	156661451	156662580	+	0	NA	Intergenic	Intergenic	15392	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
65323	chr14	50112621	50112930	+	0	NA	intron (NR_049738, intron 4 of 5)	L1ME3|LINE|L1	3797	NM_001040662	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
182113	chr5	56073251	56073750	+	0	NA	Intergenic	Intergenic	78333	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
101018	chr17	64773771	64774580	+	0	NA	intron (NR_026899, intron 3 of 12)	intron (NR_026899, intron 3 of 12)	-6584	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
151864	chr22	18609501	18609800	+	0	NA	exon (NM_015672, exon 1 of 1)	exon (NM_015672, exon 1 of 1)	2269	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
190774	chr6	506571	507130	+	0	NA	intron (NM_018303, intron 23 of 27)	intron (NM_018303, intron 23 of 27)	115098	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
68306	chr14	77314951	77315250	+	0	NA	intron (NM_013382, intron 1 of 20)	HERVL40-int|LTR|ERVL	5783	NM_013382	29954		NM_013382	ENSG00000009830	POMT2	LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2	protein O-mannosyltransferase 2	protein-coding
31050	chr10	88962221	88962880	+	0	NA	intron (NM_001320855, intron 1 of 8)	intron (NM_001320855, intron 1 of 8)	-9777	NM_001613	59		NM_001613	ENSG00000107796	ACTA2	ACTSA|SMDYS	actin alpha 2, smooth muscle	protein-coding
164121	chr3	56696621	56697100	+	0	NA	Intergenic	Intergenic	-13595	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
28014	chr10	43197521	43198450	+	0	NA	intron (NM_001282862, intron 10 of 12)	intron (NM_001282862, intron 10 of 12)	31754	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
65475	chr14	51860101	51861300	+	0	NA	promoter-TSS (NM_001243774)	promoter-TSS (NM_001243774)	88	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
147361	chr20	58391201	58391980	+	0	NA	intron (NM_001195677, intron 1 of 2)	AluSz|SINE|Alu	2361	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
55531	chr12	105325571	105325980	+	0	NA	intron (NR_131986, intron 1 of 2)	AluSq2|SINE|Alu	1242	NR_131986	105369954		NR_131986	ENSG00000257642	C12orf75-AS1	KCCAT198	C12orf75 antisense RNA 1	ncRNA
51539	chr12	52351571	52352280	+	0	NA	Intergenic	Intergenic	12697	NM_001300810	3891		NM_002283	ENSG00000135443	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
222541	chr8	140590871	140592300	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	44048	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
208542	chr7	70692571	70693150	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-439284	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
70803	chr14	103542971	103543630	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	14104	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
72366	chr15	31352811	31354250	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	26695	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
168326	chr3	141737601	141738800	+	0	NA	promoter-TSS (NR_037703)	promoter-TSS (NR_037703)	-9	NM_183237	9616		NM_014245	ENSG00000114125	RNF7	CKBBP1|ROC2|SAG|rbx2	ring finger protein 7	protein-coding
227412	chr9	89576171	89576880	+	0	NA	Intergenic	Intergenic	-28487	NM_006705	10912		NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
25392	chr10	6503151	6503450	+	0	NA	intron (NM_001282645, intron 3 of 16)	intron (NM_001282645, intron 3 of 16)	76976	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
235307	chrX	42715321	42715650	+	0	NA	Intergenic	Intergenic	62678	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
133677	chr2	127077971	127078130	+	0	NA	intron (NM_139345, intron 1 of 15)	intron (NM_139345, intron 1 of 15)	4015	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
203679	chr7	1019051	1019150	+	0	NA	intron (NR_146964, intron 1 of 4)	AluSx|SINE|Alu	3926	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
105309	chr17	82530921	82531530	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	11493	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
26100	chr10	13299271	13300630	+	0	NA	promoter-TSS (NM_001323084)	promoter-TSS (NM_001323084)	114	NM_006214	5264		NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
19206	chr1	172441351	172441650	+	0	NA	TTS (NM_002642)	TTS (NM_002642)	2569	NM_153747	5279		NM_002642	ENSG00000135845	PIGC	GPI2|GPIBD16|MRT62	phosphatidylinositol glycan anchor biosynthesis class C	protein-coding
68455	chr14	84036851	84037150	+	0	NA	Intergenic	Intergenic	-1234932	NR_145983	26843		NR_145983		SNORD3P3	RNU3P3|U3|U3.5|u3.7	small nucleolar RNA, C/D box 3 pseudogene 3	snoRNA
26468	chr10	17616851	17618100	+	0	NA	promoter-TSS (NM_014241)	promoter-TSS (NM_014241)	-101	NM_014241	9200		NM_014241	ENSG00000165996	HACD1	CAP|CMYP11|MYONP|PTPLA	3-hydroxyacyl-CoA dehydratase 1	protein-coding
136619	chr2	179018071	179018300	+	0	NA	intron (NM_173648, intron 2 of 23)	intron (NM_173648, intron 2 of 23)	31952	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
35566	chr11	1669801	1670030	+	0	NA	Intergenic	Intergenic	4316	NR_026643	387742		NM_001014374	ENSG00000205866	FAM99A	-	family with sequence similarity 99 member A	ncRNA
206617	chr7	35844501	35844700	+	0	NA	intron (NM_001788, intron 2 of 12)	intron (NM_001788, intron 2 of 12)	43381	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
148119	chr20	63445001	63445400	+	0	NA	intron (NM_001382235, intron 3 of 16)	intron (NM_001382235, intron 3 of 16)	27455	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
209764	chr7	87216171	87217440	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	2927	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
219211	chr8	66666401	66668130	+	0	NA	promoter-TSS (NM_001204173)	promoter-TSS (NM_001204173)	-34	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
30031	chr10	73796671	73797930	+	0	NA	non-coding (NR_038357, exon 4 of 4)	non-coding (NR_038357, exon 4 of 4)	4099	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
80426	chr16	2634221	2634580	+	0	NA	Intergenic	Intergenic	-4582	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
51768	chr12	53322901	53323300	+	0	NA	Intergenic	AluSp|SINE|Alu	-1490	NM_001173466	8086		NM_015665	ENSG00000094914	AAAS	AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003	aladin WD repeat nucleoporin	protein-coding
198692	chr6	108112971	108114100	+	0	NA	Intergenic	Intergenic	-10098	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
18127	chr1	160736971	160737400	+	0	NA	Intergenic	L1MDa|LINE|L1	-1872	NM_001282594	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
224321	chr9	6708971	6709330	+	0	NA	Intergenic	AluJr|SINE|Alu	-11713	NM_001146696	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
36333	chr11	3879101	3879980	+	0	NA	intron (NM_001382571, intron 1 of 9)	MIRc|SINE|MIR	23478	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
50066	chr12	44794071	44794230	+	0	NA	intron (NM_001145108, intron 3 of 19)	MIR|SINE|MIR	81511	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
141189	chr2	239301251	239301750	+	0	NA	intron (NM_006037, intron 2 of 26)	AluJr|SINE|Alu	-3962	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
63647	chr14	20960951	20961530	+	0	NA	Intergenic	L1MA2|LINE|L1	5753	NM_002934	6036		NM_002934	ENSG00000169385	RNASE2	EDN|RAF3|RNS2	ribonuclease A family member 2	protein-coding
185799	chr5	132424351	132424830	+	0	NA	intron (NR_161242, intron 2 of 3)	MIR|SINE|MIR	13661	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
180866	chr5	32612921	32613630	+	0	NA	Intergenic	Intergenic	27718	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
209663	chr7	78040151	78040550	+	0	NA	intron (NM_012301, intron 21 of 21)	intron (NM_012301, intron 21 of 21)	200220	NM_001127359	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
95396	chr17	35918851	35918950	+	0	NA	intron (NM_001163120, intron 3 of 3).2	intron (NM_001163120, intron 3 of 3).2	-7877	NR_126038	100533789		NR_126038		LRRC37A8P	-	leucine rich repeat containing 37 member A8, pseudogene	pseudo
171626	chr3	197501751	197502050	+	0	NA	Intergenic	Intergenic	7761	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
229782	chr9	125233401	125234080	+	0	NA	exon (NM_005833, exon 8 of 8)	exon (NM_005833, exon 8 of 8)	7603	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
196441	chr6	43494171	43494530	+	0	NA	intron (NM_001350565, intron 2 of 10)	intron (NM_001350565, intron 2 of 10)	4592	NM_001350567	93643		NM_080604	ENSG00000137221	TJAP1	PILT|TJP4	tight junction associated protein 1	protein-coding
44642	chr11	110295471	110297280	+	0	NA	intron (NM_001260496, intron 1 of 7)	CpG	239	NM_002906	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
170523	chr3	186572351	186572450	+	0	NA	intron (NR_165643, intron 2 of 9)	AluSx|SINE|Alu	1680	NR_165640	51726		NM_016306	ENSG00000090520	DNAJB11	ABBP-2|ABBP2|DJ9|Dj-9|EDJ|ERdj3|ERj3|ERj3p|PKD6|PRO1080|UNQ537	DnaJ heat shock protein family (Hsp40) member B11	protein-coding
98871	chr17	48528301	48529750	+	0	NA	3' UTR (NM_002144, exon 2 of 2)	3' UTR (NM_002144, exon 2 of 2)	1986	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
62688	chr13	102724821	102725100	+	0	NA	Intergenic	Intergenic	-30439	NM_001010977	196541		NM_001010977	ENSG00000139780	METTL21C	C13orf39	methyltransferase 21C, AARS1 lysine	protein-coding
200290	chr6	132811821	132812600	+	0	NA	Intergenic	AluSq|SINE|Alu	-2359	NM_001016	6206		NM_001016	ENSG00000112306	RPS12	S12|eS12	ribosomal protein S12	protein-coding
210414	chr7	100041421	100041700	+	0	NA	non-coding (NR_144477, exon 7 of 7)	non-coding (NR_144477, exon 7 of 7)	-8214	NM_001362781	7589		NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
13025	chr1	111205621	111206500	+	0	NA	Intergenic	L1ME3A|LINE|L1	-1522	NM_001271833	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
206789	chr7	36775271	36775930	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-51051	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
136787	chr2	181469651	181469950	+	0	NA	intron (NM_000885, intron 2 of 27)	L1PA5|LINE|L1	12414	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
77705	chr15	85686671	85687130	+	0	NA	intron (NM_007200, intron 16 of 36)	intron (NM_007200, intron 16 of 36)	66950	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
68937	chr14	91386321	91386650	+	0	NA	intron (NM_001080414, intron 3 of 29)	AluSq2|SINE|Alu	31335	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
34931	chr11	435271	435930	+	0	NA	intron (NM_001347882, intron 1 of 21)	(GTATA)n|Simple_repeat|Simple_repeat	6411	NM_001347882	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
135231	chr2	159419471	159419830	+	0	NA	intron (NM_001289975, intron 12 of 35)	intron (NM_001289975, intron 12 of 35)	-132947	NM_001330280	151525		NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
182736	chr5	68268251	68269130	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-19829	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
187317	chr5	141620251	141620350	+	0	NA	TTS (NM_001355040)	TTS (NM_001355040)	-1300	NM_001079812	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
54966	chr12	96294621	96295450	+	0	NA	exon (NM_001170464, exon 10 of 16)	exon (NM_001170464, exon 10 of 16)	39537	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
94519	chr17	29536571	29537370	+	0	NA	intron (NM_025142, intron 17 of 17)	AluY|SINE|Alu	30067	NM_198147	116236		NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding
137463	chr2	197042821	197043280	+	0	NA	intron (NM_001195144, intron 16 of 27)	intron (NM_001195144, intron 16 of 27)	-116343	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
27431	chr10	31745521	31745980	+	0	NA	Intergenic	MamGyp-int|LTR|Gypsy	163176	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
175443	chr4	71188871	71189130	+	0	NA	intron (NM_001134742, intron 1 of 24)	intron (NM_001134742, intron 1 of 24)	1741	NM_001098484	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
98178	chr17	46100271	46100430	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSx3|SINE|Alu	92432	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
174045	chr4	26877021	26878300	+	0	NA	intron (NM_020860, intron 1 of 11)	L1MCc|LINE|L1	16819	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
208746	chr7	73519901	73520680	+	0	NA	intron (NM_001370402, intron 1 of 18)	intron (NM_001370402, intron 1 of 18)	2003	NM_001370402	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
35762	chr11	2150701	2150900	+	0	NA	intron (NM_001042376, intron 2 of 4)	intron (NM_001042376, intron 2 of 4)	-1197	NM_001007139	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
45337	chr11	118222451	118223180	+	0	NA	intron (NM_001098526, intron 1 of 9)	AluSz6|SINE|Alu	2196	NM_001098526	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
189558	chr5	174935951	174936130	+	0	NA	intron (NR_046113, intron 2 of 2)	intron (NR_046113, intron 2 of 2)	59691	NR_046113	441116		NM_001004348	ENSG00000204754	LINC01951	-	long intergenic non-protein coding RNA 1951	ncRNA
52861	chr12	57127121	57129250	+	0	NA	promoter-TSS (NM_002332)	promoter-TSS (NM_002332)	-298	NM_002332	4035		NM_002332	ENSG00000123384	LRP1	A2MR|APOER|APR|CD91|DDH3|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5	LDL receptor related protein 1	protein-coding
201858	chr6	150417701	150418400	+	0	NA	Intergenic	Intergenic	49038	NR_134655	389434		NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
183209	chr5	76172601	76172800	+	0	NA	intron (NM_014979, intron 2 of 12)	SVA_F|Retroposon|SVA	89317	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
32836	chr10	110023851	110024300	+	0	NA	intron (NM_016824, intron 1 of 14)	L1PA16|LINE|L1	-15694	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
20195	chr1	193106351	193106450	+	0	NA	promoter-TSS (NM_016066)	promoter-TSS (NM_016066)	-286	NM_016066	51022		NM_016066	ENSG00000023572	GLRX2	CGI-133|GRX2	glutaredoxin 2	protein-coding
33356	chr10	117167001	117167400	+	0	NA	TTS (NR_037436)	TTS (NR_037436)	574	NR_037436	100500893		NR_037436	ENSG00000266782	MIR3663	-	microRNA 3663	ncRNA
56006	chr12	110308271	110308430	+	0	NA	intron (NM_170665, intron 5 of 19)	L1PA17|LINE|L1	27103	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
211412	chr7	105042201	105042400	+	0	NA	intron (NM_182931, intron 3 of 26)	intron (NM_182931, intron 3 of 26)	28095	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
195185	chr6	36032371	36032930	+	0	NA	intron (NM_139014, intron 1 of 10)	L2a|LINE|L2	4842	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
155577	chr22	38743171	38743550	+	0	NA	intron (NM_001199580, intron 9 of 18)	AluSq2|SINE|Alu	12106	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
126184	chr2	26721721	26721980	+	0	NA	intron (NM_002246, intron 1 of 1)	intron (NM_002246, intron 1 of 1)	29128	NM_002246	3777		NM_002246	ENSG00000171303	KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TASK1|TBAK1	potassium two pore domain channel subfamily K member 3	protein-coding
215255	chr7	156943321	156944000	+	0	NA	Intergenic	Intergenic	-6052	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
52168	chr12	54293251	54293350	+	0	NA	exon (NM_001136023, exon 3 of 3)	exon (NM_001136023, exon 3 of 3)	2479	NM_006163	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
179534	chr4	184964201	184965900	+	0	NA	Intergenic	Intergenic	-26610	NR_039660	100616111		NR_039660	ENSG00000263458	MIR4455	-	microRNA 4455	ncRNA
193825	chr6	31478251	31478700	+	0	NA	Intergenic	Intergenic	7246	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
61623	chr13	73721971	73722330	+	0	NA	intron (NM_007249, intron 6 of 7)	intron (NM_007249, intron 6 of 7)	157906	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
24719	chr1	247408171	247408780	+	0	NA	Intergenic	L1MB2|LINE|L1	-7698	NM_001243133	114548		NM_004895	ENSG00000162711	NLRP3	AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1	NLR family pyrin domain containing 3	protein-coding
81215	chr16	4510801	4511000	+	0	NA	TTS (NM_001286267)	TTS (NM_001286267)	15042	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
76863	chr15	77909671	77909830	+	0	NA	Intergenic	Intergenic	17096	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
149456	chr21	31662551	31664150	+	0	NA	intron (NM_000454, intron 1 of 4)	AluYj4|SINE|Alu	3657	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
52400	chr12	55741771	55742200	+	0	NA	Intergenic	Intergenic	-1137	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
131990	chr2	100418401	100418600	+	0	NA	promoter-TSS (NM_004854)	promoter-TSS (NM_004854)	-832	NM_004854	9486		NM_004854	ENSG00000115526	CHST10	HNK-1ST|HNK1ST	carbohydrate sulfotransferase 10	protein-coding
218482	chr8	51897171	51897330	+	0	NA	intron (NM_052937, intron 1 of 5)	intron (NM_052937, intron 1 of 5)	1786	NM_001363193	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
123173	chr19	52237771	52238330	+	0	NA	Intergenic	FRAM|SINE|Alu	16030	NR_106859	102466984		NR_106859	ENSG00000274380	MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
20160	chr1	192805571	192806280	+	0	NA	Intergenic	Intergenic	-3114	NM_002923	5997		NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G protein signaling 2	protein-coding
20408	chr1	198189451	198189550	+	0	NA	intron (NM_133494, intron 1 of 9)	MER131|DNA?|DNA?	32502	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
202823	chr6	159694301	159695050	+	0	NA	intron (NM_001322817, intron 3 of 7)	AluSz|SINE|Alu	-1347	NM_001322816	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
4146	chr1	19344151	19345150	+	0	NA	intron (NM_001206540, intron 7 of 9)	intron (NM_001206540, intron 7 of 9)	32324	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
130543	chr2	85665921	85666530	+	0	NA	intron (NM_000542, intron 4 of 10)	(GT)n|Simple_repeat|Simple_repeat	1974	NM_001367281	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
229586	chr9	123361121	123361380	+	0	NA	intron (NM_173689, intron 1 of 12)	intron (NM_173689, intron 1 of 12)	5053	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
106162	chr18	9924551	9925050	+	0	NA	intron (NM_194434, intron 1 of 5)	MIR3|SINE|MIR	10784	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
147848	chr20	62801971	62802130	+	0	NA	TTS (NM_018270)	TTS (NM_018270)	-2785	NM_007346	11054		NM_007346	ENSG00000060491	OGFR	-	opioid growth factor receptor	protein-coding
131646	chr2	97601501	97601700	+	0	NA	Intergenic	L1PA5|LINE|L1	-11635	NM_025190	57730		NM_020970	ENSG00000196912	ANKRD36B	KIAA1641	ankyrin repeat domain 36B	protein-coding
14794	chr1	146123371	146123730	+	0	NA	intron (NM_001302371, intron 17 of 89)	intron (NM_001302371, intron 17 of 89)	21254	NM_001302371	100132406		NM_001039703	ENSG00000271425	NBPF10	AB6|AG1|NBPF9	NBPF member 10	protein-coding
23251	chr1	227816351	227816450	+	0	NA	intron (NM_183062, intron 2 of 4)	intron (NM_183062, intron 2 of 4)	683	NM_183062	339501		NM_183062	ENSG00000185888	PRSS38	MPN2	serine protease 38	protein-coding
231140	chr9	129854621	129855480	+	0	NA	intron (NM_001110303, intron 3 of 25)	MIR|SINE|MIR	-14555	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
196337	chr6	43173681	43175050	+	0	NA	intron (NM_001292001, intron 2 of 6)	CpG	1969	NM_001292001	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
166214	chr3	112056471	112056830	+	0	NA	intron (NM_001366279, intron 7 of 15)	intron (NM_001366279, intron 7 of 15)	13672	NM_001366279	344805		NM_001042575	ENSG00000176040	TMPRSS7	-	transmembrane serine protease 7	protein-coding
135423	chr2	161153521	161154000	+	0	NA	intron (NM_133484, intron 1 of 3)	intron (NM_133484, intron 1 of 3)	-6668	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
163972	chr3	53042051	53042530	+	0	NA	intron (NM_016329, intron 1 of 20)	intron (NM_016329, intron 1 of 20)	3783	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
129169	chr2	68152901	68153450	+	0	NA	intron (NR_046234, intron 1 of 6)	MER91A|DNA|hAT-Tip100	4352	NM_001256476	116143		NM_138458	ENSG00000243667	DNAAF10	WDR92	dynein axonemal assembly factor 10	protein-coding
13870	chr1	117782201	117782400	+	0	NA	Intergenic	Intergenic	147321	NM_001135589	54834		NM_017686	ENSG00000196505	GDAP2	MACROD3|SCAR27	ganglioside induced differentiation associated protein 2	protein-coding
134025	chr2	131044751	131045080	+	0	NA	intron (NM_001375902, intron 9 of 10)	intron (NM_001375902, intron 9 of 10)	48247	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
77133	chr15	79431821	79432250	+	0	NA	promoter-TSS (NM_015206)	promoter-TSS (NM_015206)	-301	NM_015206	23251		NM_015206	ENSG00000169330	MINAR1	KIAA1024|UBTOR	membrane integral NOTCH2 associated receptor 1	protein-coding
58757	chr12	132638821	132639080	+	0	NA	intron (NM_006231, intron 40 of 48)	intron (NM_006231, intron 40 of 48)	20174	NM_170682	22953		NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	purinergic receptor P2X 2	protein-coding
253	chr1	914551	914950	+	0	NA	Intergenic	AluSp|SINE|Alu	4942	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
182532	chr5	65623801	65625400	+	0	NA	promoter-TSS (NM_001365342)	promoter-TSS (NM_001365342)	-131	NM_001093755	80006		NM_024941	ENSG00000113597	TRAPPC13	C5orf44|SHLD3	trafficking protein particle complex subunit 13	protein-coding
37008	chr11	12006571	12006730	+	0	NA	intron (NM_001018057, intron 1 of 6)	intron (NM_001018057, intron 1 of 6)	1989	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
100456	chr17	61401851	61402430	+	0	NA	intron (NM_005994, intron 2 of 6)	CpG-11509	2297	NM_005994	6909		NM_005994	ENSG00000121068	TBX2	VETD	T-box transcription factor 2	protein-coding
54282	chr12	89234901	89235100	+	0	NA	Intergenic	L2a|LINE|L2	117501	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
96439	chr17	40192701	40192900	+	0	NA	promoter-TSS (NR_106927)	promoter-TSS (NR_106927)	-797	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
115471	chr19	15357951	15358250	+	0	NA	intron (NM_005858, intron 13 of 13)	intron (NM_005858, intron 13 of 13)	21687	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
184378	chr5	98771361	98772080	+	0	NA	intron (NR_033932, intron 1 of 1)	intron (NR_033932, intron 1 of 1)	1364	NR_033932	503569		NR_033932	ENSG00000246763	RGMB-AS1	-	RGMB antisense RNA 1	ncRNA
176630	chr4	99819521	99819980	+	0	NA	intron (NM_014395, intron 1 of 8)	intron (NM_014395, intron 1 of 8)	2923	NM_014395	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
48892	chr12	12527651	12529230	+	0	NA	intron (NM_030640, intron 1 of 6)	intron (NM_030640, intron 1 of 6)	34423	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
91696	chr17	6428451	6428550	+	0	NA	exon (NM_014336, exon 3 of 6)	exon (NM_014336, exon 3 of 6)	6621	NM_001033054	23746		NM_014336	ENSG00000129221	AIPL1	AIPL2|LCA4	aryl hydrocarbon receptor interacting protein like 1	protein-coding
89231	chr16	88632171	88632730	+	0	NA	TTS (NM_001294340)	TTS (NM_001294340)	-6122	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
55777	chr12	108605771	108606330	+	0	NA	Intergenic	Intergenic	-7966	NM_181724	338773		NM_181724	ENSG00000183160	TMEM119	OBIF	transmembrane protein 119	protein-coding
152732	chr22	21686401	21686600	+	0	NA	exon (NM_001317996, exon 11 of 21)	exon (NM_001317996, exon 11 of 21)	20488	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
170090	chr3	182993871	182994030	+	0	NA	Intergenic	L1PA13|LINE|L1	-8032	NM_001308101	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
45906	chr11	120431871	120432230	+	0	NA	intron (NM_015313, intron 11 of 40)	intron (NM_015313, intron 11 of 40)	46723	NM_001301084	23365		NM_015313	ENSG00000196914	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor 12	protein-coding
79016	chr16	52551	54180	+	0	NA	promoter-TSS (NM_024571)	promoter-TSS (NM_024571)	243	NM_016310	51728		NM_016310	ENSG00000161980	POLR3K	C11|C11-RNP3|HLD21|My010|RPC10|RPC11|RPC12.5	RNA polymerase III subunit K	protein-coding
178318	chr4	145620751	145621330	+	0	NA	intron (NM_001375644, intron 1 of 6)	intron (NM_001375644, intron 1 of 6)	1655	NM_172250	166785		NM_172250	ENSG00000151611	MMAA	cblA	metabolism of cobalamin associated A	protein-coding
48923	chr12	12655801	12656480	+	0	NA	Intergenic	Intergenic	40043	NM_006143	2842		NM_006143	ENSG00000183150	GPR19	-	G protein-coupled receptor 19	protein-coding
157655	chr22	46147501	46147700	+	0	NA	Intergenic	Intergenic	-2926	NM_005036	5465		NM_005036	ENSG00000186951	PPARA	NR1C1|PPAR|PPAR-alpha|PPARalpha|hPPAR	peroxisome proliferator activated receptor alpha	protein-coding
136802	chr2	181677901	181678350	+	0	NA	exon (NM_002500, exon 2 of 2)	exon (NM_002500, exon 2 of 2)	2392	NM_002500	4760		NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|T2D|bHLHa3	neuronal differentiation 1	protein-coding
184651	chr5	107502071	107502630	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	168587	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
130270	chr2	84869101	84869830	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	11619	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
75464	chr15	65871921	65872200	+	0	NA	intron (NM_004663, intron 1 of 4)	AluJb|SINE|Alu	2569	NM_001206836	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
125152	chr2	10014001	10014400	+	0	NA	Intergenic	CpG	29201	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
68548	chr14	89351451	89352200	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	65408	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
204245	chr7	2555121	2556500	+	0	NA	promoter-TSS (NR_146879)	promoter-TSS (NR_146879)	-286	NM_001350627	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
41720	chr11	66656171	66656780	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluSp|SINE|Alu	17772	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
171388	chr3	196178071	196178430	+	0	NA	Intergenic	L1ME3E|LINE|L1	33150	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
191772	chr6	14120151	14121150	+	0	NA	intron (NM_001040280, intron 2 of 4)	intron (NM_001040280, intron 2 of 4)	2878	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
150862	chr21	44088871	44089830	+	0	NA	intron (NM_003274, intron 17 of 22)	intron (NM_003274, intron 17 of 22)	15026	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
88864	chr16	87690221	87690480	+	0	NA	non-coding (NR_073379, exon 4 of 6)	non-coding (NR_073379, exon 4 of 6)	75636	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
39385	chr11	60164771	60164930	+	0	NA	Intergenic	L1PA16|LINE|L1	18481	NM_022349	64231		NM_022349	ENSG00000110077	MS4A6A	4SPAN3|4SPAN3.2|CD20L3|CDA01|MS4A6|MST090|MSTP090	membrane spanning 4-domains A6A	protein-coding
65116	chr14	44898671	44899480	+	0	NA	non-coding (NR_110050, exon 3 of 3)	non-coding (NR_110050, exon 3 of 3)	1800	NM_001017923	122525		NM_001017923	ENSG00000179476	C14orf28	DRIP-1|DRIP1|c14_5270	chromosome 14 open reading frame 28	protein-coding
157905	chr22	49765201	49766580	+	0	NA	Intergenic	Intergenic	58441	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
165704	chr3	102113971	102114730	+	0	NA	Intergenic	Intergenic	-49355	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
184901	chr5	112870921	112871180	+	0	NA	intron (NM_001204199, intron 4 of 4)	AluSq4|SINE|Alu	9763	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
229807	chr9	125530171	125530330	+	0	NA	intron (NM_001006618, intron 7 of 7)	intron (NM_001006618, intron 7 of 7)	176958	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
5627	chr1	26166301	26166500	+	0	NA	intron (NM_001364667, intron 1 of 2)	AluSz6|SINE|Alu	2182	NM_001364667	110806296		NM_001364667	ENSG00000282872	C1orf232	-	chromosome 1 open reading frame 230	protein-coding
181250	chr5	39207521	39207980	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	11813	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
80847	chr16	3500601	3501980	+	0	NA	intron (NM_015041, intron 1 of 11)	MER3|DNA|hAT-Charlie	286	NM_015041	23059		NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
114526	chr19	12829701	12830050	+	0	NA	exon (NM_001270440, exon 3 of 7)	exon (NM_001270440, exon 3 of 7)	541	NM_001080997	83546		NM_031429	ENSG00000132026	RTBDN	-	retbindin	protein-coding
33198	chr10	113705101	113705330	+	0	NA	intron (NM_001227, intron 2 of 6)	intron (NM_001227, intron 2 of 6)	-4130	NM_001267058	840		NM_001227	ENSG00000165806	CASP7	CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3	caspase 7	protein-coding
21692	chr1	206727651	206727950	+	0	NA	intron (NM_032960, intron 1 of 9)	AluY|SINE|Alu	42803	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
168415	chr3	142314821	142315080	+	0	NA	intron (NM_019001, intron 39 of 41)	intron (NM_019001, intron 39 of 41)	-89365	NM_001039547	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
161618	chr3	43223671	43224050	+	0	NA	Intergenic	L1MC5a|LINE|L1	-62652	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
216828	chr8	22583301	22584130	+	0	NA	intron (NM_198042, intron 2 of 7)	AluSx1|SINE|Alu	3240	NM_001368120	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
165953	chr3	107676521	107676980	+	0	NA	intron (NM_020235, intron 3 of 16)	intron (NM_020235, intron 3 of 16)	153788	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
99580	chr17	50486421	50486680	+	0	NA	TTS (NM_018346)	TTS (NM_018346)	7690	NM_018346	55316		NM_018346	ENSG00000136444	RSAD1	HemW	radical S-adenosyl methionine domain containing 1	protein-coding
92494	chr17	8878201	8878630	+	0	NA	TTS (NM_014308)	TTS (NM_014308)	-10738	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
155320	chr22	38211121	38211480	+	0	NA	intron (NM_001161573, intron 1 of 2)	AluSx4|SINE|Alu	8280	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
133699	chr2	127219901	127220600	+	0	NA	promoter-TSS (NM_001367502)	promoter-TSS (NM_001367502)	49	NM_001367502	339761		NM_001001665	ENSG00000186684	CYP27C1	-	cytochrome P450 family 27 subfamily C member 1	protein-coding
40411	chr11	64143651	64143950	+	0	NA	intron (NM_014067, intron 3 of 10)	(AC)n|Simple_repeat|Simple_repeat	22313	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
203697	chr7	1035921	1036180	+	0	NA	intron (NM_032350, intron 2 of 4)	L1MC1|LINE|L1	-7618	NR_146965	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
159758	chr3	16287111	16288180	+	0	NA	intron (NM_001352980, intron 6 of 9)	intron (NM_001352980, intron 6 of 9)	22433	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
161485	chr3	42504471	42505080	+	0	NA	intron (NM_001251883, intron 1 of 9)	intron (NM_001251883, intron 1 of 9)	2132	NM_004624	7433		NM_004624	ENSG00000114812	VIPR1	HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R	vasoactive intestinal peptide receptor 1	protein-coding
145321	chr20	41078101	41078680	+	0	NA	intron (NM_003286, intron 5 of 20)	intron (NM_003286, intron 5 of 20)	49568	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
168688	chr3	150609251	150609580	+	0	NA	intron (NM_016275, intron 1 of 5)	AluJb|SINE|Alu	6094	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
33405	chr10	118423821	118424100	+	0	NA	Intergenic	Intergenic	66852	NR_108045	100506126		NR_108045	ENSG00000232139	LINC00867	-	long intergenic non-protein coding RNA 867	ncRNA
33891	chr10	124464971	124466030	+	0	NA	intron (NM_001167880, intron 1 of 5)	intron (NM_001167880, intron 1 of 5)	3677	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
165603	chr3	101674051	101674450	+	0	NA	intron (NM_014415, intron 1 of 10)	AluSz6|SINE|Alu	-2180	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
193547	chr6	30611951	30612400	+	0	NA	intron (NM_001376195, intron 2 of 19).6	intron (NM_001376195, intron 2 of 19).6	5068	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
112346	chr19	5946601	5947000	+	0	NA	intron (NM_007320, intron 2 of 15)	intron (NM_007320, intron 2 of 15)	31340	NM_003624	8498		NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
185777	chr5	132395401	132395600	+	0	NA	3' UTR (NM_001308122, exon 11 of 11)	3' UTR (NM_001308122, exon 11 of 11)	-15429	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
74124	chr15	55217301	55218350	+	0	NA	intron (NM_183236, intron 6 of 6)	intron (NM_183236, intron 6 of 6)	-20884	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
49534	chr12	26121921	26123800	+	0	NA	exon (NM_030762, exon 5 of 5)	exon (NM_030762, exon 5 of 5)	2177	NM_030762	79365		NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|FNSS1|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding
15550	chr1	150543051	150543150	+	0	NA	Intergenic	AluSx|SINE|Alu	-6308	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
18621	chr1	165914141	165914630	+	0	NA	Intergenic	Intergenic	6464	NR_037431	100500832		NR_037431	ENSG00000283936	MIR3658	-	microRNA 3658	ncRNA
207121	chr7	42876401	42876680	+	0	NA	Intergenic	MIRb|SINE|MIR	35303	NM_001363436	79020		NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
63141	chr13	113518021	113518480	+	0	NA	intron (NM_001349745, intron 6 of 10)	intron (NM_001349745, intron 6 of 10)	27229	NR_146221	55002		NM_017905	ENSG00000150403	TMCO3	C13orf11	transmembrane and coiled-coil domains 3	protein-coding
43592	chr11	83155871	83157700	+	0	NA	promoter-TSS (NM_001346415)	promoter-TSS (NM_001346415)	-346	NM_001346414	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
106934	chr18	26383601	26383930	+	0	NA	intron (NM_001293725, intron 14 of 14)	intron (NM_001293725, intron 14 of 14)	-39230	NR_110762	100506787		NR_110762		LINC01543	-	long intergenic non-protein coding RNA 1543	ncRNA
143187	chr20	24731251	24731350	+	0	NA	Intergenic	Intergenic	-217969	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
199130	chr6	111707421	111707680	+	0	NA	intron (NM_001370529, intron 4 of 11)	MER113|DNA|hAT-Charlie	51581	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
37173	chr11	13963221	13963680	+	0	NA	intron (NM_006108, intron 1 of 15)	CpG	727	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
142429	chr20	3906801	3907800	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluSx|SINE|Alu	-10194	NR_029519	406896		NR_029519	ENSG00000199024	MIR103A2	MIR103-2|MIRN103-2|mir-103a-2	microRNA 103a-2	ncRNA
129237	chr2	68318921	68319750	+	0	NA	exon (NM_015463, exon 1 of 3)	exon (NM_015463, exon 1 of 3)	614	NM_001371604	25927		NM_015463	ENSG00000119865	CNRIP1	C2orf32|CRIP-1|CRIP1	cannabinoid receptor interacting protein 1	protein-coding
179086	chr4	168320451	168320750	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1848	NM_017631	55601		NM_017631	ENSG00000137628	DDX60	-	DExD/H-box helicase 60	protein-coding
30945	chr10	87546271	87546730	+	0	NA	intron (NM_004897, intron 4 of 4)	intron (NM_004897, intron 4 of 4)	38667	NM_001178118	9562		NM_004897	ENSG00000107789	MINPP1	HIPER1|MINPP2|MIPP|PCH16	multiple inositol-polyphosphate phosphatase 1	protein-coding
214574	chr7	150614301	150615250	+	0	NA	Intergenic	Intergenic	17610	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
128927	chr2	64522801	64523240	+	0	NA	non-coding (NR_136167, exon 1 of 1)	non-coding (NR_136167, exon 1 of 1)	1135	NR_136167	101927402		NR_136167	ENSG00000260101	AFTPH-DT	-	AFTPH divergent transcript	ncRNA
87766	chr16	75267221	75267800	+	0	NA	promoter-TSS (NM_001170716).2	promoter-TSS (NM_001170716).2	497	NM_001170715	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
83564	chr16	28103971	28104130	+	0	NA	intron (NM_001270940, intron 22 of 24)	intron (NM_001270940, intron 22 of 24)	-40336	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
166800	chr3	122572871	122573630	+	0	NA	3' UTR (NM_138287, exon 5 of 5)	3' UTR (NM_138287, exon 5 of 5)	-4400	NM_001113523	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
131679	chr2	97716001	97716230	+	0	NA	intron (NM_001079, intron 2 of 13)	L2b|LINE|L2	2233	NM_001378594	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
63848	chr14	21523951	21524500	+	0	NA	exon (NM_001364564, exon 2 of 2)	exon (NM_001364564, exon 2 of 2)	2121	NR_111967	6297		NM_005407	ENSG00000165821	SALL2	COLB|HSAL2|Sal-2|ZNF795|p150(Sal2)	spalt like transcription factor 2	protein-coding
201677	chr6	149514571	149514730	+	0	NA	intron (NM_139126, intron 11 of 12)	MER112|DNA|hAT-Charlie	-29636	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
160272	chr3	25784921	25785350	+	0	NA	intron (NM_001145294, intron 1 of 11)	intron (NM_001145294, intron 1 of 11)	-1637	NM_001145295	55768		NM_018297	ENSG00000151092	NGLY1	CDDG|CDG1V|PNG-1|PNG1|PNGase	N-glycanase 1	protein-coding
118145	chr19	35000901	35001880	+	0	NA	intron (NM_001320034, intron 1 of 18)	intron (NM_001320034, intron 1 of 18)	1067	NM_001136199	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
38262	chr11	36672951	36673130	+	0	NA	Intergenic	Intergenic	-74761	NM_001243786	5897		NM_000536	ENSG00000175097	RAG2	RAG-2	recombination activating 2	protein-coding
145827	chr20	45791611	45792980	+	0	NA	promoter-TSS (NM_080614)	promoter-TSS (NM_080614)	341	NM_052951	116092		NM_052951	ENSG00000101457	DNTTIP1	C20orf167|Tdif1|dJ447F3.4	deoxynucleotidyltransferase terminal interacting protein 1	protein-coding
121342	chr19	46788201	46789780	+	0	NA	promoter-TSS (NM_005628)	promoter-TSS (NM_005628)	-396	NM_005628	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
98361	chr17	46360371	46360630	+	0	NA	intron (NM_001039083, intron 1 of 3).5	AluJr|SINE|Alu	1266	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
236232	chrX	65721471	65721630	+	0	NA	intron (NM_002444, intron 2 of 12)	intron (NM_002444, intron 2 of 12)	53896	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
40150	chr11	62854651	62857800	+	0	NA	promoter-TSS (NR_002564)	promoter-TSS (NR_002564)	116	NM_001012664	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
110840	chr19	2537751	2538050	+	0	NA	intron (NM_052847, intron 3 of 4)	AluSz|SINE|Alu	61773	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
82305	chr16	15645071	15645330	+	0	NA	intron (NM_001143979, intron 1 of 9).2	AluSz6|SINE|Alu	1818	NM_001143979	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
218995	chr8	63165371	63166250	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	2632	NR_102684	101410533		NR_102684	ENSG00000270673	YTHDF3-DT	YTHDF3-AS1	YTHDF3 divergent transcript	ncRNA
62887	chr13	110711521	110714700	+	0	NA	promoter-TSS (NM_198219)	promoter-TSS (NM_198219)	-153	NM_198218	3621		NM_005537	ENSG00000153487	ING1	p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a	inhibitor of growth family member 1	protein-coding
110375	chr19	1915901	1916300	+	0	NA	intron (NM_079834, intron 2 of 6)	AluSx3|SINE|Alu	10701	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
2145	chr1	8384471	8385030	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	39082	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
132021	chr2	100680851	100680950	+	0	NA	Intergenic	Intergenic	77161	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
112073	chr19	5295171	5295730	+	0	NA	intron (NM_130853, intron 1 of 28)	intron (NM_130853, intron 1 of 28)	45362	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
193792	chr6	31405671	31405830	+	0	NA	intron (NM_001177519, intron 1 of 5).2	L1MA3|LINE|L1	2155	NM_000247	100507436		NM_000247	ENSG00000204520	MICA	MIC-A|PERB11.1	MHC class I polypeptide-related sequence A	protein-coding
81333	chr16	4746671	4747580	+	0	NA	intron (NM_139170, intron 8 of 9)	intron (NM_139170, intron 8 of 9)	12588	NM_139170	146562		NM_139170	ENSG00000166246	DNAAF8	C16orf71|Daap1	dynein axonemal assembly factor 8	protein-coding
157532	chr22	45418621	45419080	+	0	NA	intron (NM_015653, intron 3 of 6)	L2a|LINE|L2	5157	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
49115	chr12	14775201	14775880	+	0	NA	non-coding (NR_027716, exon 2 of 2)	non-coding (NR_027716, exon 2 of 2)	1135	NM_177925	55766		NM_018267	ENSG00000246705	H2AJ	H2AFJ	H2A.J histone	protein-coding
55257	chr12	102119521	102121000	+	0	NA	promoter-TSS (NM_001319988)	promoter-TSS (NM_001319988)	77	NM_001382723	55010		NM_017915	ENSG00000185480	PARPBP	AROM|C12orf48|PARI	PARP1 binding protein	protein-coding
93737	chr17	19766301	19766900	+	0	NA	Intergenic	Intergenic	-18302	NM_001330150	218		NM_000691	ENSG00000108602	ALDH3A1	ALDH3|ALDHIII	aldehyde dehydrogenase 3 family member A1	protein-coding
34045	chr10	124736151	124736250	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	8178	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
43261	chr11	75563471	75563800	+	0	NA	intron (NM_001235, intron 1 of 4)	intron (NM_001235, intron 1 of 4)	1382	NM_001235	871		NM_001235	ENSG00000149257	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46	serpin family H member 1	protein-coding
180909	chr5	34194071	34194580	+	0	NA	TTS (NR_157803)	TTS (NR_157803)	4744	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
38591	chr11	46247621	46247880	+	0	NA	Intergenic	Intergenic	-29912	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
5675	chr1	26338301	26338700	+	0	NA	intron (NM_001039775, intron 6 of 19)	intron (NM_001039775, intron 6 of 19)	15630	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
229301	chr9	120858571	120858980	+	0	NA	intron (NM_001286840, intron 14 of 14)	intron (NM_001286840, intron 14 of 14)	10136	NR_104601	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
219354	chr8	70333401	70333600	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	69890	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
72876	chr15	40286651	40286950	+	0	NA	Intergenic	Intergenic	-4214	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
42577	chr11	72000871	72001200	+	0	NA	intron (NM_001145055, intron 2 of 2)	intron (NM_001145055, intron 2 of 2)	1108	NM_001145055	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
64597	chr14	28843051	28843150	+	0	NA	Intergenic	LTR12|LTR|ERV1	-57313	NR_135255	105370424		NR_135255	ENSG00000257056	LINC02282	-	long intergenic non-protein coding RNA 2282	ncRNA
69905	chr14	99503071	99503430	+	0	NA	3' UTR (NM_001144995, exon 6 of 6)	3' UTR (NM_001144995, exon 6 of 6)	21841	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
229034	chr9	114323251	114324230	+	0	NA	exon (NM_000607, exon 2 of 6)	exon (NM_000607, exon 2 of 6)	642	NM_000607	5004		NM_000607	ENSG00000229314	ORM1	A1AG1|AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
59153	chr13	21575671	21575830	+	0	NA	intron (NM_152726, intron 1 of 11)	AluJb|SINE|Alu	28420	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
77880	chr15	89034271	89034430	+	0	NA	Intergenic	Kanga1c|DNA|TcMar-Tc2	-54106	NM_007011	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
208779	chr7	73576321	73576580	+	0	NA	intron (NM_012453, intron 1 of 6)	AluSx1|SINE|Alu	1937	NM_001362663	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
138777	chr2	216017551	216018380	+	0	NA	intron (NM_001372189, intron 1 of 4)	AluSx|SINE|Alu	-4414	NM_018000	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
180659	chr5	17528971	17529130	+	0	NA	Intergenic	Intergenic	-36974	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
86050	chr16	57574751	57575250	+	0	NA	exon (NM_001304376, exon 11 of 12)	exon (NM_001304376, exon 11 of 12)	32357	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
228242	chr9	97954451	97955000	+	0	NA	Intergenic	Intergenic	-9873	NM_018437	55363		NM_018437	ENSG00000136929	HEMGN	CT155|EDAG|EDAG-1|NDR	hemogen	protein-coding
196831	chr6	46848971	46849200	+	0	NA	Intergenic	Intergenic	-54386	NR_110658	101926962		NR_110658		ADGRF5-AS1	-	ADGRF5 antisense RNA 1	ncRNA
202241	chr6	156857421	156857680	+	0	NA	intron (NM_017519, intron 2 of 18)	intron (NM_017519, intron 2 of 18)	-77819	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
112379	chr19	6060001	6060280	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	50360	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
23771	chr1	233113151	233113250	+	0	NA	intron (NM_014801, intron 21 of 33)	intron (NM_014801, intron 21 of 33)	162358	NR_138027	84284		NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase|THEP1	nucleoside-triphosphatase, cancer-related	protein-coding
29491	chr10	70590221	70590480	+	0	NA	Intergenic	MER41B|LTR|ERV1	12391	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
29805	chr10	72299081	72299750	+	0	NA	Intergenic	Intergenic	25491	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
109425	chr19	702251	702350	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6635	NM_001040134	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
161992	chr3	46368221	46368950	+	0	NA	intron (NR_125406, intron 3 of 3)	intron (NR_125406, intron 3 of 3)	-1557	NM_000579	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
182905	chr5	70400751	70402430	+	0	NA	intron (NR_027386, intron 3 of 5).2	LTR12E|LTR|ERV1	-13715	NM_001364570	2966		NM_001515	ENSG00000145736	GTF2H2	BTF2|BTF2 p44|BTF2P44|T-BTF2P44|TFIIH|p44	general transcription factor IIH subunit 2	protein-coding
28638	chr10	59709551	59710180	+	0	NA	promoter-TSS (NM_001323981)	promoter-TSS (NM_001323981)	26	NM_001323979	220963		NM_194298	ENSG00000165449	SLC16A9	C10orf36|MCT9	solute carrier family 16 member 9	protein-coding
119702	chr19	41124651	41125030	+	0	NA	exon (NM_000774, exon 8 of 10)	exon (NM_000774, exon 8 of 10)	10408	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
196516	chr6	43758421	43758880	+	0	NA	Intergenic	Intergenic	-11559	NM_001171628	7422		NM_003376	ENSG00000112715	VEGFA	L-VEGF|MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
229978	chr9	126788671	126789000	+	0	NA	Intergenic	LTR33C|LTR|ERVL	-16171	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
52679	chr12	56448651	56449780	+	0	NA	TTS (NM_012064)	TTS (NM_012064)	211	NM_001330295	8914		NM_003920	ENSG00000111602	TIMELESS	FASPS4|TIM|TIM1|hTIM	timeless circadian regulator	protein-coding
22987	chr1	226099521	226099880	+	0	NA	Intergenic	AluJb|SINE|Alu	16125	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
46545	chr11	128475321	128475900	+	0	NA	intron (NM_001330451, intron 5 of 6)	AluYh3|SINE|Alu	46700	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
168293	chr3	141510201	141510400	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	23273	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
129010	chr2	64859471	64860850	+	0	NA	intron (NR_110224, intron 1 of 4)	intron (NR_110224, intron 1 of 4)	3471	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
237625	chrX	124014271	124014450	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	52654	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
169101	chr3	155111071	155111230	+	0	NA	intron (NM_007289, intron 3 of 22)	intron (NM_007289, intron 3 of 22)	30831	NM_007289	4311		NM_000902	ENSG00000196549	MME	CALLA|CD10|CMT2T|NEP|SCA43|SFE	membrane metalloendopeptidase	protein-coding
187732	chr5	143432871	143433030	+	0	NA	intron (NM_001018075, intron 1 of 8)	intron (NM_001018075, intron 1 of 8)	1859	NM_001364183	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
58277	chr12	129911551	129911650	+	0	NA	Intergenic	Intergenic	-7575	NM_133448	121256		NM_133448	ENSG00000151952	TMEM132D	MOLT|PPP1R153	transmembrane protein 132D	protein-coding
221943	chr8	129913471	129913630	+	0	NA	intron (NM_001353279, intron 2 of 13)	intron (NM_001353279, intron 2 of 13)	26261	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
82456	chr16	16393651	16393850	+	0	NA	exon (NM_001282511, exon 9 of 9)	exon (NM_001282511, exon 9 of 9)	14505	NM_001282507	101059938		NM_001282507	ENSG00000214967	NPIPA7	NPIPA8	nuclear pore complex interacting protein family member A7	protein-coding
182655	chr5	67202851	67203430	+	0	NA	Intergenic	Intergenic	-6341	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
123720	chr19	55048451	55048550	+	0	NA	non-coding (NR_027381, exon 5 of 8).5	non-coding (NR_027381, exon 5 of 8).5	-10236	NM_001256017	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
175833	chr4	78181801	78182050	+	0	NA	intron (NM_025074, intron 2 of 73)	CpG	-107060	NR_145782	109623453		NR_145782		SNORD161	-	small nucleolar RNA, C/D box 161	snoRNA
121193	chr19	46529471	46530200	+	0	NA	intron (NM_001370550, intron 1 of 2)	MIRb|SINE|MIR	-33968	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
10539	chr1	66975371	66975530	+	0	NA	intron (NM_001077702, intron 12 of 15)	AluJb|SINE|Alu	45194	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
23948	chr1	235125201	235125480	+	0	NA	intron (NM_014765, intron 1 of 4)	AluYm1|SINE|Alu	2597	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
211741	chr7	107173701	107174550	+	0	NA	intron (NM_012257, intron 1 of 10)	MIRc|SINE|MIR	5122	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
206910	chr7	38168421	38168880	+	0	NA	Intergenic	LTR78|LTR|ERV1	-9595	NM_001363347	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
220590	chr8	100901551	100902530	+	0	NA	Intergenic	Intergenic	48531	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
41838	chr11	67113151	67113980	+	0	NA	intron (NR_160735, intron 1 of 1)	intron (NR_160735, intron 1 of 1)	4783	NR_160735	107984341		NR_160735		LOC107984341	-	uncharacterized LOC107984341	ncRNA
140425	chr2	233113751	233113850	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	53458	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
222416	chr8	134591621	134591930	+	0	NA	intron (NM_020863, intron 7 of 15)	MLT1C|LTR|ERVL-MaLR	-6296	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
233018	chr9	137017121	137017380	+	0	NA	exon (NM_001606, exon 18 of 49)	exon (NM_001606, exon 18 of 49)	-10214	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
106078	chr18	9121771	9122380	+	0	NA	intron (NR_110772, intron 2 of 2)	intron (NR_110772, intron 2 of 2)	14645	NR_110771	101927275		NR_110771	ENSG00000266053	NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
133970	chr2	130725871	130726030	+	0	NA	Intergenic	Intergenic	-3120	NM_207364	344561		NM_207364	ENSG00000173302	GPR148	BTR|PGR6	G protein-coupled receptor 148	protein-coding
188423	chr5	154202571	154203280	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	12192	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
81654	chr16	10957621	10958480	+	0	NA	intron (NM_001243403, intron 2 of 20)	intron (NM_001243403, intron 2 of 20)	13486	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
18570	chr1	162922271	162922430	+	0	NA	Intergenic	Intergenic	-53535	NM_178550	339512		NM_178550	ENSG00000185860	CCDC190	C1orf110	coiled-coil domain containing 190	protein-coding
10768	chr1	77280651	77280750	+	0	NA	Intergenic	Intergenic	-1319	NM_174858	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
11066	chr1	85109371	85109680	+	0	NA	intron (NM_145172, intron 15 of 22)	intron (NM_145172, intron 15 of 22)	-24269	NR_039619	100616481		NR_039619	ENSG00000266110	MIR4423	mir-4423	microRNA 4423	ncRNA
235350	chrX	44291551	44291850	+	0	NA	intron (NM_025184, intron 2 of 14)	MIRb|SINE|MIR	51972	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
145545	chr20	44197351	44197650	+	0	NA	exon (NM_016470, exon 4 of 4)	exon (NM_016470, exon 4 of 4)	-10312	NM_175913	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
41131	chr11	65575401	65576440	+	0	NA	promoter-TSS (NM_001351087)	promoter-TSS (NM_001351087)	-118	NM_001351087	254102		NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1 like 1	protein-coding
45139	chr11	117195751	117195930	+	0	NA	non-coding (NR_045215, exon 8 of 8)	non-coding (NR_045215, exon 8 of 8)	-3454	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
24377	chr1	241643021	241643380	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-2831	NM_001381854	1122		NM_001821	ENSG00000203668	CHML	REP2	CHM like Rab escort protein	protein-coding
59335	chr13	24540221	24540600	+	0	NA	intron (NR_158453, intron 1 of 1)	intron (NR_158453, intron 1 of 1)	1310	NR_158455	105370295		NR_158453	ENSG00000287376	LOC105370295	-	uncharacterized LOC105370295	ncRNA
109053	chr18	79805471	79805630	+	0	NA	Intergenic	Intergenic	-58118	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
7206	chr1	32288071	32288430	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	-3833	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
168401	chr3	142211151	142211250	+	0	NA	intron (NM_001039547, intron 3 of 15)	MER20|DNA|hAT-Charlie	14385	NR_033289	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
226704	chr9	75121151	75121250	+	0	NA	intron (NM_012383, intron 2 of 9)	MIR|SINE|MIR	32686	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
113218	chr19	8469671	8470230	+	0	NA	intron (NM_031203, intron 10 of 16)	intron (NM_031203, intron 10 of 16)	24975	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
216751	chr8	22465571	22465900	+	0	NA	intron (NM_005605, intron 1 of 13)	MSTD|LTR|ERVL-MaLR	24657	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
153298	chr22	24178371	24179180	+	0	NA	TTS (NM_001199281)	TTS (NM_001199281)	-2712	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
47098	chr12	644971	646150	+	0	NA	non-coding (NR_122124, exon 5 of 5)	non-coding (NR_122124, exon 5 of 5)	-1924	NR_160428	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
127793	chr2	44235401	44235680	+	0	NA	TTS (NM_177968)	TTS (NM_177968)	-39940	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
149820	chr21	35014551	35014850	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	24726	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
150612	chr21	43370501	43370700	+	0	NA	Intergenic	Intergenic	-8251	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
217141	chr8	25468451	25468750	+	0	NA	intron (NM_152562, intron 6 of 14)	intron (NM_152562, intron 6 of 14)	9367	NM_152562	157313		NM_152562	ENSG00000184661	CDCA2	PPP1R81|Repo-Man	cell division cycle associated 2	protein-coding
110692	chr19	2284401	2285250	+	0	NA	Intergenic	AluSx|SINE|Alu	-2650	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
67854	chr14	74111471	74111830	+	0	NA	intron (NM_001024674, intron 5 of 5)	(TATT)n|Simple_repeat|Simple_repeat	26694	NM_001372005	91750		NM_001024674	ENSG00000205659	LIN52	C14orf46|c14_5549	lin-52 DREAM MuvB core complex component	protein-coding
173412	chr4	8156671	8157430	+	0	NA	intron (NM_001130086, intron 1 of 17)	intron (NM_001130086, intron 1 of 17)	1763	NM_001130085	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
159821	chr3	16380001	16380430	+	0	NA	intron (NM_015150, intron 4 of 9)	MIRb|SINE|MIR	115003	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
197096	chr6	57045101	57045650	+	0	NA	Intergenic	L1M1|LINE|L1	-1157	NM_001286274	57691		NM_020931	ENSG00000168116	KIAA1586	-	KIAA1586	protein-coding
108125	chr18	62331501	62331900	+	0	NA	intron (NM_001270950, intron 1 of 7)	intron (NM_001270950, intron 1 of 7)	6390	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
3754	chr1	16661171	16661830	+	0	NA	Intergenic	Intergenic	5448	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
105362	chr17	82646451	82646550	+	0	NA	intron (NM_019613, intron 1 of 9)	AluSp|SINE|Alu	1944	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
81155	chr16	4418451	4418550	+	0	NA	Intergenic	AluSq10|SINE|Alu	-1904	NM_024535	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
202374	chr6	157818021	157818280	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	-5096	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
5036	chr1	24518521	24518980	+	0	NA	intron (NM_001251985, intron 1 of 1)	AluJb|SINE|Alu	4436	NM_001251982	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
125230	chr2	10376951	10377550	+	0	NA	intron (NM_001258359, intron 1 of 4)	intron (NM_001258359, intron 1 of 4)	8486	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
195137	chr6	35685701	35686130	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluSq2|SINE|Alu	3000	NM_001145776	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
224406	chr9	14692921	14693980	+	0	NA	promoter-TSS (NM_001354125)	promoter-TSS (NM_001354125)	-18	NM_178566	340481		NM_178566	ENSG00000175893	ZDHHC21	DHHC-21|DHHC21|DNZ1|HSPC097	zinc finger DHHC-type palmitoyltransferase 21	protein-coding
163849	chr3	52483271	52483850	+	0	NA	intron (NM_007184, intron 13 of 20)	intron (NM_007184, intron 13 of 20)	-11778	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
46442	chr11	128055801	128056000	+	0	NA	Intergenic	L1MB8|LINE|L1	-152866	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
31247	chr10	91928871	91929230	+	0	NA	intron (NR_165098, intron 1 of 38)	AluJb|SINE|Alu	5280	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
9509	chr1	51329471	51329630	+	0	NA	promoter-TSS (NR_123731)	promoter-TSS (NR_123731)	-104	NR_123731	102724097		NR_123731	ENSG00000261664	TTC39A-AS1	-	TTC39A antisense RNA 1	ncRNA
127694	chr2	43214321	43215180	+	0	NA	Intergenic	Intergenic	11856	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
140053	chr2	231393221	231394100	+	0	NA	Intergenic	Intergenic	-2050	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
68276	chr14	77070351	77071070	+	0	NA	non-coding (NR_110553, exon 3 of 3)	non-coding (NR_110553, exon 3 of 3)	5481	NR_110553	102724190		NR_110553	ENSG00000258819	LINC02289	-	long intergenic non-protein coding RNA 2289	ncRNA
226603	chr9	73160251	73160550	+	0	NA	intron (NM_000700, intron 5 of 12)	intron (NM_000700, intron 5 of 12)	8535	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
4372	chr1	20723121	20724830	+	0	NA	intron (NM_001103160, intron 6 of 8)	intron (NM_001103160, intron 6 of 8)	-5968	NM_001122819	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
147910	chr20	62898821	62899280	+	0	NA	intron (NM_001193369, intron 6 of 15)	intron (NM_001193369, intron 6 of 15)	-16147	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
142355	chr20	3764801	3765100	+	0	NA	intron (NR_047675, intron 1 of 5)	intron (NR_047675, intron 1 of 5)	2803	NM_001258430	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
189123	chr5	170631721	170631980	+	0	NA	intron (NM_014592, intron 1 of 7)	intron (NM_014592, intron 1 of 7)	49620	NR_136214	105377716		NR_136214	ENSG00000253591	KCNIP1-AS1	-	KCNIP1 antisense RNA 1	ncRNA
85704	chr16	56603651	56604080	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-4719	NM_005953	4502		NM_005953	ENSG00000125148	MT2A	MT-2|MT-II|MT2	metallothionein 2A	protein-coding
232540	chr9	136341571	136341730	+	0	NA	3' UTR (NM_015597, exon 9 of 9)	3' UTR (NM_015597, exon 9 of 9)	-11407	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
23111	chr1	226681171	226681530	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-6282	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
29265	chr10	69141371	69141530	+	0	NA	intron (NM_001318944, intron 3 of 9)	MLT1I|LTR|ERVL-MaLR	17272	NM_001318944	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
100820	chr17	64085551	64086100	+	0	NA	intron (NM_001433, intron 2 of 21)	intron (NM_001433, intron 2 of 21)	44319	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
68083	chr14	75276721	75277800	+	0	NA	Intergenic	CpG	-1568	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
2023	chr1	7647001	7647500	+	0	NA	intron (NM_001349608, intron 6 of 21)	intron (NM_001349608, intron 6 of 21)	-22480	NM_001349614	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
181132	chr5	37834651	37834750	+	0	NA	exon (NM_001190468, exon 2 of 3)	exon (NM_001190468, exon 2 of 3)	122	NM_001278098	2668		NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
234320	chrX	13750221	13750550	+	0	NA	intron (NM_001330209, intron 9 of 21)	intron (NM_001330209, intron 9 of 21)	15637	NM_003611	8481		NM_003611	ENSG00000046651	OFD1	71-7A|CXorf5|JBTS10|RP23|SGBS2	OFD1 centriole and centriolar satellite protein	protein-coding
78287	chr15	90884071	90884230	+	0	NA	promoter-TSS (NM_002005)	promoter-TSS (NM_002005)	-354	NM_002005	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
117991	chr19	33767971	33768130	+	0	NA	intron (NM_001127895, intron 3 of 4)	intron (NM_001127895, intron 3 of 4)	-28820	NM_001129995	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
157911	chr22	49771021	49772130	+	0	NA	Intergenic	CpG	52756	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
226953	chr9	79695201	79695400	+	0	NA	intron (NR_104239, intron 9 of 20)	intron (NR_104239, intron 9 of 20)	122123	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
72689	chr15	38560121	38561330	+	0	NA	intron (NM_001128602, intron 1 of 15)	intron (NM_001128602, intron 1 of 15)	4089	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
188055	chr5	149998701	149998900	+	0	NA	intron (NM_030953, intron 1 of 1)	L2c|LINE|L2	1854	NM_001243253	81789		NM_030953	ENSG00000164296	TIGD6	-	tigger transposable element derived 6	protein-coding
23818	chr1	234477751	234478500	+	0	NA	intron (NM_005646, intron 1 of 29)	intron (NM_005646, intron 1 of 29)	1054	NM_005646	6894		NM_005646	ENSG00000059588	TARBP1	TRM3|TRMT3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
184915	chr5	112917271	112917850	+	0	NA	intron (NM_005669, intron 2 of 4)	intron (NM_005669, intron 2 of 4)	4667	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
24668	chr1	247114701	247115230	+	0	NA	Intergenic	Intergenic	-2548	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
161868	chr3	45886051	45886750	+	0	NA	promoter-TSS (NM_006641)	promoter-TSS (NM_006641)	-104	NM_001256369	10803		NM_006641	ENSG00000173585	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	C-C motif chemokine receptor 9	protein-coding
74752	chr15	63221321	63221580	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	31844	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
125384	chr2	11342051	11342150	+	0	NA	intron (NM_001321643, intron 1 of 32)	intron (NM_001321643, intron 1 of 32)	2536	NM_004850	9475		NM_004850	ENSG00000134318	ROCK2	ROCK-II	Rho associated coiled-coil containing protein kinase 2	protein-coding
48429	chr12	9685171	9685650	+	0	NA	intron (NM_013269, intron 2 of 4)	L1PA7|LINE|L1	15697	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
29290	chr10	69232301	69233180	+	0	NA	promoter-TSS (NR_120648)	promoter-TSS (NR_120648)	-250	NR_120648	101928994		NR_120648	ENSG00000229261	LOC101928994	-	uncharacterized LOC101928994	ncRNA
16196	chr1	153814851	153815150	+	0	NA	intron (NM_020699, intron 7 of 10)	AluSx|SINE|Alu	21053	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
196385	chr6	43269121	43270600	+	0	NA	intron (NM_032538, intron 13 of 14)	CpG	26379	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
146121	chr20	48620251	48622250	+	0	NA	Intergenic	MIRb|SINE|MIR	206749	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138621	chr2	209999701	210001200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2115	NM_006916	6120		NM_006916	ENSG00000197713	RPE	RPE2-1	ribulose-5-phosphate-3-epimerase	protein-coding
125017	chr2	9558901	9559180	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-3210	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
232273	chr9	134423671	134424230	+	0	NA	intron (NM_001291921, intron 5 of 8)	intron (NM_001291921, intron 5 of 8)	17390	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
178975	chr4	163148721	163149250	+	0	NA	intron (NM_138386, intron 2 of 7)	intron (NM_138386, intron 2 of 7)	17905	NM_001128931	92345		NM_138386	ENSG00000145414	NAF1	PFBMFT7	nuclear assembly factor 1 ribonucleoprotein	protein-coding
49775	chr12	31867351	31867450	+	0	NA	Intergenic	L1M4|LINE|L1	19803	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
119445	chr19	40405401	40405830	+	0	NA	intron (NM_020956, intron 4 of 5)	intron (NM_020956, intron 4 of 5)	7749	NM_020956	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
96933	chr17	42162971	42163680	+	0	NA	exon (NM_012285, exon 14 of 17)	exon (NM_012285, exon 14 of 17)	-8336	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
212221	chr7	120951971	120952200	+	0	NA	intron (NM_198267, intron 2 of 4)	intron (NM_198267, intron 2 of 4)	1308	NM_019071	54556		NM_019071	ENSG00000071243	ING3	Eaf4|ING2|MEAF4|p47ING3	inhibitor of growth family member 3	protein-coding
43801	chr11	86456021	86456600	+	0	NA	intron (NR_147828, intron 8 of 14)	intron (NR_147828, intron 8 of 14)	81423	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
1187	chr1	2236851	2237830	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	9021	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
140359	chr2	232698901	232699330	+	0	NA	intron (NM_001103148, intron 1 of 27)	L2a|LINE|L2	1784	NR_103494	26058		NM_015575	ENSG00000204120	GIGYF2	GYF2|PARK11|PERQ2|PERQ3|TNRC15	GRB10 interacting GYF protein 2	protein-coding
43495	chr11	78429701	78429900	+	0	NA	promoter-TSS (NR_120564)	promoter-TSS (NR_120564)	36	NR_120564	101928865		NR_120564	ENSG00000251323	LINC02728	-	long intergenic non-protein coding RNA 2728	ncRNA
213388	chr7	135975851	135975950	+	0	NA	intron (NM_001128619, intron 1 of 3)	intron (NM_001128619, intron 1 of 3)	1459	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
54596	chr12	92503851	92503950	+	0	NA	Intergenic	Intergenic	37221	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
63918	chr14	21978351	21979150	+	0	NA	Intergenic	Intergenic	-307733	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
99059	chr17	48929571	48929930	+	0	NA	TTS (NM_023079)	TTS (NM_023079)	15092	NR_133679	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
118673	chr19	37691821	37692680	+	0	NA	promoter-TSS (NM_152605)	promoter-TSS (NM_152605)	65	NM_152605	163115		NM_152605	ENSG00000290988	ZNF781	-	zinc finger protein 781	pseudo
49614	chr12	27800771	27801130	+	0	NA	3' UTR (NM_020782, exon 3 of 3)	3' UTR (NM_020782, exon 3 of 3)	-20714	NM_001146221	100287284		NM_001146221	ENSG00000205693	MANSC4	-	MANSC domain containing 4	protein-coding
65256	chr14	49917301	49917500	+	0	NA	Intergenic	Intergenic	24318	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
51311	chr12	51310851	51311480	+	0	NA	intron (NM_016293, intron 2 of 12)	AluJr|SINE|Alu	13009	NM_001290009	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
55319	chr12	103927251	103927350	+	0	NA	intron (NR_027249, intron 1 of 15)	intron (NR_027249, intron 1 of 15)	2911	NR_027249	253724		NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
205963	chr7	26160871	26161030	+	0	NA	intron (NM_004289, intron 1 of 3)	MIRb|SINE|MIR	8752	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
234577	chrX	19759821	19760550	+	0	NA	intron (NM_001353892, intron 2 of 17)	AluY|SINE|Alu	39588	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
104579	chr17	81385121	81386130	+	0	NA	promoter-TSS (NR_164138)	promoter-TSS (NR_164138)	-243	NR_164137	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
57870	chr12	123380551	123380880	+	0	NA	Intergenic	AluSz|SINE|Alu	-3417	NM_001324505	387893		NM_020382	ENSG00000183955	KMT5A	PR-Set7|PR/SET07|SET07|SET8|SETD8	lysine methyltransferase 5A	protein-coding
30815	chr10	85612001	85613200	+	0	NA	intron (NM_017551, intron 15 of 15)	intron (NM_017551, intron 15 of 15)	34869	NR_038986	100507470		NR_038986	ENSG00000234942	GRID1-AS1	-	GRID1 antisense RNA 1	ncRNA
16358	chr1	154334851	154335780	+	0	NA	intron (NM_001367934, intron 10 of 26)	intron (NM_001367934, intron 10 of 26)	6517	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
198430	chr6	106095751	106095850	+	0	NA	intron (NM_001198, intron 3 of 6)	intron (NM_001198, intron 3 of 6)	-3141	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
144857	chr20	36896821	36897200	+	0	NA	intron (NM_001363733, intron 15 of 15)	intron (NM_001363733, intron 15 of 15)	20872	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
216939	chr8	22908951	22909700	+	0	NA	intron (NM_001363233, intron 3 of 6)	intron (NM_001363233, intron 3 of 6)	18589	NM_144962	157310		NM_144962	ENSG00000134020	PEBP4	CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4	phosphatidylethanolamine binding protein 4	protein-coding
43460	chr11	78078271	78078680	+	0	NA	intron (NM_004549, intron 1 of 2)	intron (NM_004549, intron 1 of 2)	1387	NM_001203262	100532726		NM_001203260	ENSG00000259112	NDUFC2-KCTD14	-	NDUFC2-KCTD14 readthrough	protein-coding
19376	chr1	173996421	173996680	+	0	NA	intron (NM_172071, intron 1 of 19)	LTR72|LTR|ERV1	-3478	NM_001300851	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
161896	chr3	45963901	45964600	+	0	NA	intron (NM_024513, intron 10 of 17)	intron (NM_024513, intron 10 of 17)	20786	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
43108	chr11	75022821	75023300	+	0	NA	Intergenic	Intergenic	34127	NM_001367866	10825		NM_006656	ENSG00000162139	NEU3	SIAL3	neuraminidase 3	protein-coding
52886	chr12	57201851	57202350	+	0	NA	intron (NM_002332, intron 67 of 88)	intron (NM_002332, intron 67 of 88)	7596	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
156120	chr22	40099821	40100830	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSz6|SINE|Alu	55508	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
39850	chr11	62374971	62375150	+	0	NA	intron (NM_001083926, intron 4 of 6)	intron (NM_001083926, intron 4 of 6)	37612	NM_001083926	80150		NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase and isoaspartyl peptidase 1	protein-coding
161437	chr3	42016051	42016380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-54112	NR_136342	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
153266	chr22	24140171	24140550	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-41127	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
118774	chr19	38385221	38385480	+	0	NA	intron (NM_152657, intron 3 of 3)	intron (NM_152657, intron 3 of 3)	2684	NM_152657	199720		NM_152657	ENSG00000179168	GGN	-	gametogenetin	protein-coding
37713	chr11	30349401	30349600	+	0	NA	Intergenic	Intergenic	26396	NM_152316	120534		NM_152316	ENSG00000152219	ARL14EP	ARF7EP|C11orf46|dJ299F11.1	ADP ribosylation factor like GTPase 14 effector protein	protein-coding
183036	chr5	73233421	73234480	+	0	NA	Intergenic	CpG	-31989	NR_134291	340090		NR_134291	ENSG00000287090	LOC340090	-	uncharacterized LOC340090	ncRNA
94331	chr17	28811821	28813530	+	0	NA	promoter-TSS (NM_001288634)	promoter-TSS (NM_001288634)	-204	NM_001288634	55731		NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding
201721	chr6	149751301	149752230	+	0	NA	intron (NM_001252051, intron 1 of 6)	AluSx1|SINE|Alu	2024	NM_001360456	5110		NM_005389	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
76726	chr15	76181601	76182000	+	0	NA	promoter-TSS (NR_120360)	promoter-TSS (NR_120360)	-314	NR_120360	101929439		NR_120360	ENSG00000259422	LOC101929439	-	uncharacterized LOC101929439	ncRNA
239357	chrY	19570801	19571400	+	0	NA	intron (NR_045128, intron 1 of 9)	MER92A|LTR|ERV1	3742	NR_045129	246126		NM_001005852	ENSG00000291033	TXLNGY	CYorf15A|CYorf15B|TXLNG2P	taxilin gamma Y-linked (pseudogene)	pseudo
109359	chr19	629851	630150	+	0	NA	exon (NM_005035, exon 3 of 21)	exon (NM_005035, exon 3 of 21)	3537	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
174594	chr4	40254551	40256050	+	0	NA	Intergenic	Intergenic	-51885	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
34232	chr10	130110101	130112330	+	0	NA	promoter-TSS (NR_034125)	promoter-TSS (NR_034125)	-385	NM_001355042	387723		NM_001355042	ENSG00000237489	C10orf143	LINC00959	chromosome 10 open reading frame 143	protein-coding
116032	chr19	17181271	17182050	+	0	NA	intron (NM_004145, intron 15 of 39)	intron (NM_004145, intron 15 of 39)	-33697	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
225214	chr9	34170571	34170980	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-8230	NM_001171201	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
6800	chr1	30894301	30894700	+	0	NA	intron (NM_014654, intron 1 of 4)	(GT)n|Simple_repeat|Simple_repeat	14258	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
197068	chr6	53728551	53728980	+	0	NA	Intergenic	Intergenic	-63009	NM_001003760	401265		NM_001003760	ENSG00000124743	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch like family member 31	protein-coding
34454	chr10	132435251	132435580	+	0	NA	Intergenic	Intergenic	-9774	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
547	chr1	1241701	1242350	+	0	NA	TTS (NM_001014980)	TTS (NM_001014980)	4697	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
80652	chr16	3002451	3002750	+	0	NA	Intergenic	AluY|SINE|Alu	3645	NR_110949	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
38802	chr11	47275121	47275580	+	0	NA	intron (NR_164842, intron 3 of 33)	AluSx|SINE|Alu	-3240	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
27954	chr10	42091871	42092030	+	0	NA	Intergenic	Intergenic	276095	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
126352	chr2	27410971	27411330	+	0	NA	Intergenic	Intergenic	-1559	NM_177983	5496		NM_177983	ENSG00000115241	PPM1G	PP2CG|PP2CGAMMA|PPP2CG	protein phosphatase, Mg2+/Mn2+ dependent 1G	protein-coding
35996	chr11	2889371	2889530	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-3675	NM_001362474	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
124122	chr19	55668721	55669300	+	0	NA	intron (NM_007279, intron 9 of 11)	intron (NM_007279, intron 9 of 11)	-6185	NM_001321263	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
9532	chr1	51489601	51489800	+	0	NA	intron (NM_001981, intron 1 of 24)	intron (NM_001981, intron 1 of 24)	29566	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
186240	chr5	134407151	134407450	+	0	NA	intron (NM_080656, intron 2 of 2)	intron (NM_080656, intron 2 of 2)	4581	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
185621	chr5	131488351	131488830	+	0	NA	intron (NM_016340, intron 15 of 27)	intron (NM_016340, intron 15 of 27)	146639	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
39418	chr11	60864001	60864400	+	0	NA	Intergenic	LTR19B|LTR|ERV1	-3342	NM_207341	22917		NM_207341	ENSG00000149506	ZP1	HEL163|OOMD|OOMD1|OZEMA1|ZPB1	zona pellucida glycoprotein 1	protein-coding
149571	chr21	33236351	33236450	+	0	NA	intron (NM_001385055, intron 1 of 9)	MER45C|DNA|hAT-Tip100	6462	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
79228	chr16	374001	374950	+	0	NA	intron (NM_021259, intron 9 of 12)	intron (NM_021259, intron 9 of 12)	-3937	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
48501	chr12	9862821	9863280	+	0	NA	intron (NM_005127, intron 1 of 4)	L1M3f|LINE|L1	6809	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
218726	chr8	58721751	58722350	+	0	NA	Intergenic	Intergenic	-62197	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
77355	chr15	82678021	82678480	+	0	NA	intron (NM_001278512, intron 10 of 26)	intron (NM_001278512, intron 10 of 26)	-15575	NM_001348441	8120		NM_004644	ENSG00000103723	AP3B2	DEE48|EIEE48|NAPTB	adaptor related protein complex 3 subunit beta 2	protein-coding
153784	chr22	29589171	29589330	+	0	NA	Intergenic	Intergenic	-8137	NM_003634	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
181964	chr5	55096821	55097400	+	0	NA	Intergenic	L1P2|LINE|L1	-5536	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
143135	chr20	23873401	23873600	+	0	NA	Intergenic	LTR65|LTR|ERV1	6248	NM_001900	1473		NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
162088	chr3	46893551	46893650	+	0	NA	intron (NM_001184744, intron 2 of 14)	intron (NM_001184744, intron 2 of 14)	11351	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
40210	chr11	63491621	63492330	+	0	NA	promoter-TSS (NM_001146729)	promoter-TSS (NM_001146729)	-808	NM_001146728	117245		NM_054108	ENSG00000168004	PLAAT5	HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT	phospholipase A and acyltransferase 5	protein-coding
159570	chr3	14946721	14947800	+	0	NA	promoter-TSS (NM_001291694)	promoter-TSS (NM_001291694)	245	NR_046252	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
129285	chr2	68446401	68446600	+	0	NA	Intergenic	L1PA3|LINE|L1	20794	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
156773	chr22	41892821	41893230	+	0	NA	intron (NR_103834, intron 12 of 21)	intron (NR_103834, intron 12 of 21)	-7919	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
92608	chr17	9924801	9925080	+	0	NA	intron (NM_201432, intron 11 of 13)	intron (NM_201432, intron 11 of 13)	-19669	NM_002903	5957		NM_002903	ENSG00000109047	RCVRN	RCV1	recoverin	protein-coding
74625	chr15	60697201	60698000	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	16031	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
1566	chr1	3532551	3532650	+	0	NA	intron (NM_001409, intron 4 of 36)	intron (NM_001409, intron 4 of 36)	28190	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
84017	chr16	29466171	29466630	+	0	NA	intron (NR_002557, intron 2 of 4)	CpG	1178	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
154350	chr22	32644351	32644850	+	0	NA	intron (NM_133633, intron 5 of 11)	intron (NM_133633, intron 5 of 11)	-157105	NM_000362	7078		NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
110918	chr19	2777101	2777400	+	0	NA	intron (NM_003021, intron 1 of 11)	AluSq|SINE|Alu	6023	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
84834	chr16	31113121	31113380	+	0	NA	TTS (NM_001271926)	TTS (NM_001271926)	-4414	NM_182958	84148		NM_032188	ENSG00000103510	KAT8	LIGOWS|MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
153683	chr22	29116901	29117100	+	0	NA	intron (NM_001039570, intron 3 of 8)	intron (NM_001039570, intron 3 of 8)	43965	NM_032045	83999		NM_032045	ENSG00000183762	KREMEN1	ECTD13|KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
150998	chr21	44364151	44364450	+	0	NA	intron (NM_001320350, intron 3 of 32)	intron (NM_001320350, intron 3 of 32)	10699	NM_001320350	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
163876	chr3	52504321	52504630	+	0	NA	exon (NM_015136, exon 11 of 69)	exon (NM_015136, exon 11 of 69)	9137	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
15089	chr1	148519321	148519880	+	0	NA	Intergenic	Intergenic	-36298	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
11081	chr1	85256401	85256930	+	0	NA	intron (NR_024113, intron 3 of 3)	AluY|SINE|Alu	2997	NR_024113	148423		NM_198077	ENSG00000162642	C1orf52	gm117	chromosome 1 open reading frame 52	protein-coding
210070	chr7	96321301	96322780	+	0	NA	promoter-TSS (NM_014251)	promoter-TSS (NM_014251)	58	NM_014251	10165		NM_014251	ENSG00000004864	SLC25A13	ARALAR2|CITRIN|CTLN2|NICCD	solute carrier family 25 member 13	protein-coding
100571	chr17	62807951	62808530	+	0	NA	promoter-TSS (NR_135634)	promoter-TSS (NR_135634)	74	NM_001288780	162333		NM_152598	ENSG00000173838	MARCHF10	MARCH-X|MARCH10|RNF190	membrane associated ring-CH-type finger 10	protein-coding
195269	chr6	36483621	36483880	+	0	NA	intron (NM_173562, intron 6 of 7)	AluJr|SINE|Alu	40750	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
75787	chr15	68809421	68809880	+	0	NA	intron (NM_006305, intron 1 of 6)	intron (NM_006305, intron 1 of 6)	-2549	NR_026808	80035		NM_024970		ANP32A-IT1	C15orf28|HsT18971|NCRNA00321	ANP32A intronic transcript 1	ncRNA
55117	chr12	98532651	98533180	+	0	NA	exon (NM_003276, exon 4 of 4)	exon (NM_003276, exon 4 of 4)	-16689	NR_027157	100128191		NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
164923	chr3	71176921	71177200	+	0	NA	intron (NM_001244810, intron 6 of 20)	AluSx1|SINE|Alu	-44863	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
49255	chr12	19454721	19454980	+	0	NA	intron (NM_001267043, intron 1 of 8)	intron (NM_001267043, intron 1 of 8)	14251	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
47328	chr12	1799801	1800000	+	0	NA	intron (NM_172364, intron 33 of 37)	intron (NM_172364, intron 33 of 37)	-20367	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
56344	chr12	112981971	112982330	+	0	NA	intron (NM_016817, intron 1 of 10)	L1MA4|LINE|L1	3631	NM_002535	4939		NM_002535	ENSG00000111335	OAS2	-	2'-5'-oligoadenylate synthetase 2	protein-coding
212843	chr7	130733371	130734550	+	0	NA	exon (NM_138693, exon 1 of 1)	exon (NM_138693, exon 1 of 1)	247	NM_138693	136259		NM_138693	ENSG00000266265	KLF14	BTEB5	KLF transcription factor 14	protein-coding
182911	chr5	70451501	70451700	+	0	NA	intron (NR_027386, intron 3 of 5).2	intron (NR_027386, intron 3 of 5).2	-34901	NR_073404	441081		NR_073404		LOC441081	-	POM121 membrane glycoprotein (rat) pseudogene	pseudo
115556	chr19	15553671	15554450	+	0	NA	Intergenic	AluJo|SINE|Alu	45535	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
88204	chr16	81808901	81809500	+	0	NA	intron (NM_002661, intron 2 of 32)	LTR16C|LTR|ERVL	29909	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
156674	chr22	41655571	41656250	+	0	NA	intron (NM_001288976, intron 9 of 12)	Tigger7|DNA|TcMar-Tigger	32957	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
89430	chr16	88939401	88939780	+	0	NA	non-coding (NR_168285, exon 1 of 2)	non-coding (NR_168285, exon 1 of 2)	319	NR_168285	100129697		NM_001290330		LOC100129697	-	uncharacterized LOC100129697	ncRNA
7628	chr1	35560651	35560950	+	0	NA	exon (NM_001014839, exon 4 of 8)	exon (NM_001014839, exon 4 of 8)	3001	NM_014284	23154		NM_014284	ENSG00000020129	NCDN	NEDIES	neurochondrin	protein-coding
14243	chr1	143237921	143238380	+	0	NA	Intergenic	Intergenic	184442	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
33502	chr10	119135951	119136050	+	0	NA	intron (NM_207009, intron 8 of 8)	AluJb|SINE|Alu	29692	NR_110305	119559		NM_178867	ENSG00000183605	SFXN4	BCRM1|COXPD18|SLC56A4	sideroflexin 4	protein-coding
8049	chr1	38586951	38587300	+	0	NA	Intergenic	MamGyp-int|LTR|Gypsy	111929	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
169115	chr3	155835751	155836200	+	0	NA	intron (NM_001363883, intron 1 of 3)	intron (NM_001363883, intron 1 of 3)	18431	NM_001363883	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
80917	chr16	3789101	3790400	+	0	NA	intron (NM_001079846, intron 4 of 29)	intron (NM_001079846, intron 4 of 29)	-72226	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
65776	chr14	54443701	54443950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2451	NM_005776	10175		NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family member 1	protein-coding
197172	chr6	60259501	60260080	+	0	NA	Intergenic	L2c|LINE|L2	-1314340	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2 like 9 (pseudogene)	pseudo
59213	chr13	23373601	23373800	+	0	NA	intron (NM_014363, intron 3 of 9)	AluSc|SINE|Alu	1808	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
170483	chr3	185991201	185991400	+	0	NA	Intergenic	Intergenic	31357	NR_151491	344887		NR_033752	ENSG00000290862	NMRAL2P	NMRAL1P1	NmrA like redox sensor 2, pseudogene	pseudo
64749	chr14	34553451	34553550	+	0	NA	Intergenic	AluSz|SINE|Alu	2889	NR_004421	6060		NR_004421	ENSG00000207389	RNU1-4	HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F	RNA, U1 small nuclear 4	snRNA
44658	chr11	110388251	110388550	+	0	NA	intron (NR_135100, intron 3 of 3)	L1PA5|LINE|L1	33286	NR_135100	105369486		NR_135100		LINC02732	-	long intergenic non-protein coding RNA 2732	ncRNA
144351	chr20	35003001	35003300	+	0	NA	TTS (NM_020884)	TTS (NM_020884)	-12678	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
224094	chr9	4489821	4491130	+	0	NA	promoter-TSS (NM_004170)	promoter-TSS (NM_004170)	7	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
219182	chr8	66567551	66567650	+	0	NA	intron (NM_001294282, intron 12 of 14)	intron (NM_001294282, intron 12 of 14)	45618	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
150966	chr21	44320171	44321450	+	0	NA	intron (NM_001002021, intron 15 of 24)	intron (NM_001002021, intron 15 of 24)	17528	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
98386	chr17	46548001	46548850	+	0	NA	exon (NM_001006607, exon 9 of 14).2	exon (NM_001006607, exon 9 of 14).2	31266	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
237740	chrX	129522501	129523930	+	0	NA	exon (NM_001378261, exon 1 of 25)	exon (NM_001378261, exon 1 of 25)	275	NM_003069	6594		NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
144678	chr20	36432421	36432680	+	0	NA	exon (NM_014902, exon 3 of 13)	exon (NM_014902, exon 3 of 13)	-28918	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
225800	chr9	37512271	37512850	+	0	NA	exon (NM_012166, exon 11 of 11)	exon (NM_012166, exon 11 of 11)	26612	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
136656	chr2	180125371	180125880	+	0	NA	Intergenic	Intergenic	-118328	NM_020943	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
148156	chr20	63517471	63518200	+	0	NA	Intergenic	Intergenic	-2906	NR_148427	79144		NM_024299	ENSG00000125534	PPDPF	C20orf149|dJ697K14.9|exdpf	pancreatic progenitor cell differentiation and proliferation factor	protein-coding
87781	chr16	75430051	75430350	+	0	NA	intron (NM_006324, intron 1 of 6)	AluSx|SINE|Alu	3303	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
68756	chr14	91056371	91056530	+	0	NA	intron (NM_001322235, intron 1 of 17)	MLT1K|LTR|ERVL-MaLR	3674	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
197404	chr6	73513701	73514900	+	0	NA	Intergenic	AluY|SINE|Alu	4138	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
123645	chr19	54694701	54695100	+	0	NA	Intergenic	Intergenic	-13016	NR_003061	79166		NM_024317	ENSG00000293273	LILRP2	CD85m|ILT10|LILRA5	leukocyte immunoglobulin-like receptor pseudogene 2	pseudo
236150	chrX	63744321	63744580	+	0	NA	intron (NM_001369036, intron 1 of 10)	intron (NM_001369036, intron 1 of 10)	10673	NM_001353928	23229		NM_015185	ENSG00000131089	ARHGEF9	COLLYBISTIN|DEE8|EIEE8|HPEM-2|PEM-2|PEM2	Cdc42 guanine nucleotide exchange factor 9	protein-coding
74272	chr15	57306421	57307030	+	0	NA	non-coding (NR_024433, exon 2 of 3)	non-coding (NR_024433, exon 2 of 3)	6360	NR_024433	283663		NR_024433	ENSG00000247982	LINC00926	-	long intergenic non-protein coding RNA 926	ncRNA
10619	chr1	68120271	68120430	+	0	NA	intron (NR_040077, intron 7 of 9)	intron (NR_040077, intron 7 of 9)	63260	NR_031664	100302279		NR_031664	ENSG00000221203	MIR1262	MIRN1262|hsa-mir-1262|mir-1262	microRNA 1262	ncRNA
12904	chr1	110421371	110421530	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-13526	NM_006402	10542		NM_006402	ENSG00000134248	LAMTOR5	HBXIP|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding
229315	chr9	120881221	120881880	+	0	NA	intron (NM_001286840, intron 1 of 14)	L1ME3Cz|LINE|L1	-4362	NM_015651	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
80725	chr16	3102321	3102800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3266	NM_001365273	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
199252	chr6	111842971	111843180	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	29996	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
136906	chr2	189626001	189626400	+	0	NA	Intergenic	Intergenic	-35199	NM_001353494	110599588		NM_001353493	ENSG00000286053	ASDURF	ASNSD1|ASNSD1-SEP|NS3TP1	ASNSD1 upstream open reading frame	protein-coding
23450	chr1	228463401	228464000	+	0	NA	Intergenic	Intergenic	1626	NR_039812	100616308		NR_039812	ENSG00000266174	MIR4666A	MIR4666|hsa-mir-4666a	microRNA 4666a	ncRNA
214225	chr7	148846421	148847080	+	0	NA	intron (NM_001203248, intron 2 of 19)	intron (NM_001203248, intron 2 of 19)	36735	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
95142	chr17	35062251	35062550	+	0	NA	intron (NR_037713, intron 1 of 6)	AluSc|SINE|Alu	1307	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
43073	chr11	74683401	74683750	+	0	NA	Intergenic	CpG	27792	NM_001304417	25884		NM_015424	ENSG00000054938	CHRDL2	BNF1|CHL2	chordin like 2	protein-coding
52201	chr12	54366051	54366350	+	0	NA	intron (NR_120487, intron 1 of 3)	AluSx3|SINE|Alu	-1714	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
86589	chr16	67247001	67247940	+	0	NA	promoter-TSS (NM_013241)	promoter-TSS (NM_013241)	11	NM_001318202	29109		NM_013241	ENSG00000135723	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
28382	chr10	47311201	47312500	+	0	NA	intron (NM_004962, intron 2 of 2)	intron (NM_004962, intron 2 of 2)	-10604	NM_016204	2658		NM_016204	ENSG00000263761	GDF2	BMP-9|BMP9|HHT5	growth differentiation factor 2	protein-coding
122593	chr19	49719221	49719730	+	0	NA	Intergenic	Intergenic	27979	NM_001378484	126129		NM_152359	ENSG00000169169	CPT1C	CATL1|CPT I-C|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73	carnitine palmitoyltransferase 1C	protein-coding
87823	chr16	75622001	75622300	+	0	NA	intron (NM_001324446, intron 1 of 10)	AluSx|SINE|Alu	1131	NM_001324452	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
20694	chr1	200619301	200619500	+	0	NA	promoter-TSS (NM_001305792)	promoter-TSS (NM_001305792)	-562	NM_001305792	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
142967	chr20	19935001	19935200	+	0	NA	exon (NM_018993, exon 4 of 13)	exon (NM_018993, exon 4 of 13)	48579	NM_001242581	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
206848	chr7	37395701	37395900	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	-42132	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
192238	chr6	19804671	19804930	+	0	NA	promoter-TSS (NR_134651)	promoter-TSS (NR_134651)	-41	NR_134651	100506885		NR_134649	ENSG00000228412	LNC-LBCS	LBCS	lncRNA bladder and prostate cancer suppressor, hnRNPK interacting	ncRNA
128469	chr2	56557151	56557250	+	0	NA	Intergenic	L1PA3|LINE|L1	-371430	NR_125368	100129434		NR_125368	ENSG00000233251	LOC100129434	-	uncharacterized LOC100129434	ncRNA
186573	chr5	138486851	138487830	+	0	NA	Intergenic	Intergenic	21861	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
87992	chr16	80719551	80720330	+	0	NA	intron (NM_152342, intron 1 of 6)	intron (NM_152342, intron 1 of 6)	84658	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
189770	chr5	176652351	176652680	+	0	NA	intron (NM_001006616, intron 3 of 8)	MLT1K|LTR|ERVL-MaLR	5031	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
104546	chr17	81301201	81301400	+	0	NA	Intergenic	Intergenic	-5993	NM_138570	124565		NM_138570	ENSG00000157637	SLC38A10	PP1744|SNAT10	solute carrier family 38 member 10	protein-coding
124297	chr19	57886151	57886450	+	0	NA	intron (NM_001144989, intron 1 of 2)	intron (NM_001144989, intron 1 of 2)	2737	NM_001144989	730051		NM_001144989	ENSG00000204514	ZNF814	-	zinc finger protein 814	protein-coding
77406	chr15	83200151	83200750	+	0	NA	intron (NM_016073, intron 1 of 5)	intron (NM_016073, intron 1 of 5)	7373	NM_016073	50810		NM_016073	ENSG00000166503	HDGFL3	CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3	HDGF like 3	protein-coding
194190	chr6	32131751	32132400	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1787	NM_022110	63943		NM_022110	ENSG00000204315	FKBPL	DIR1|NG7|WISP39	FKBP prolyl isomerase like	protein-coding
76203	chr15	73684121	73685080	+	0	NA	promoter-TSS (NM_001329628)	promoter-TSS (NM_001329628)	-170	NM_001329628	80381		NM_025240	ENSG00000103855	CD276	4Ig-B7-H3|B7-H3|B7H3|B7RP-2	CD276 molecule	protein-coding
102326	chr17	75400851	75401150	+	0	NA	intron (NM_203506, intron 1 of 4)	AluSx3|SINE|Alu	4678	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
159243	chr3	12923951	12924050	+	0	NA	intron (NM_014869, intron 4 of 13)	intron (NM_014869, intron 4 of 13)	-38789	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
66007	chr14	58246871	58247030	+	0	NA	intron (NR_038123, intron 1 of 9)	L2a|LINE|L2	2107	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
43286	chr11	75867721	75868050	+	0	NA	intron (NM_003369, intron 3 of 14)	Kanga1|DNA|TcMar-Tc2	52675	NM_003369	7405		NM_003369	ENSG00000198382	UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
25146	chr10	4333771	4334150	+	0	NA	Intergenic	Intergenic	-50286	NR_108055	100507059		NR_108054	ENSG00000224382	LINC00703	-	long intergenic non-protein coding RNA 703	ncRNA
183584	chr5	80180701	80182330	+	0	NA	intron (NM_001174072, intron 2 of 11)	AluJb|SINE|Alu	74533	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
173741	chr4	16196571	16196800	+	0	NA	intron (NM_153365, intron 3 of 13)	intron (NM_153365, intron 3 of 13)	29786	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
47964	chr12	6871121	6871750	+	0	NA	TTS (NM_000365)	TTS (NM_000365)	1868	NM_001146316	84727		NM_032641	ENSG00000111671	SPSB2	GRCC9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding
24179	chr1	235883471	235884430	+	0	NA	promoter-TSS (NR_102436)	promoter-TSS (NR_102436)	-237	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
159327	chr3	13042671	13043400	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	30394	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
134453	chr2	143177301	143177830	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	48146	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
151278	chr21	45477871	45479010	+	0	NA	TTS (NR_106873)	TTS (NR_106873)	174	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
28518	chr10	50398451	50399000	+	0	NA	intron (NM_147156, intron 6 of 10)	intron (NM_147156, intron 6 of 10)	-147209	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
135055	chr2	156393871	156394430	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-41402	NM_001083112	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
38961	chr11	47541101	47541630	+	0	NA	intron (NM_001376458, intron 1 of 13)	intron (NM_001376458, intron 1 of 13)	11767	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
230591	chr9	128570351	128570950	+	0	NA	intron (NM_001375310, intron 3 of 57)	(TTAT)n|Simple_repeat|Simple_repeat	18063	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
116683	chr19	18414351	18415050	+	0	NA	Intergenic	Intergenic	-4698	NM_001009998	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
64967	chr14	36519021	36519280	+	0	NA	promoter-TSS (NR_103710)	promoter-TSS (NR_103710)	-128	NR_103710	100506237		NR_103710	ENSG00000253563	NKX2-1-AS1	-	NKX2-1 antisense RNA 1	ncRNA
191451	chr6	10724471	10724630	+	0	NA	intron (NM_016462, intron 1 of 5).2	intron (NM_016462, intron 1 of 5).2	1480	NM_016462	51522		NM_016462	ENSG00000111843	TMEM14C	C6orf53|HSPC194|MSTP073|NET26|bA421M1.6	transmembrane protein 14C	protein-coding
68552	chr14	89359601	89360050	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	57408	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
123971	chr19	55414151	55414450	+	0	NA	Intergenic	AluY|SINE|Alu	-6512	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
197047	chr6	53369851	53370350	+	0	NA	Intergenic	Intergenic	-20921	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
176985	chr4	105061171	105061600	+	0	NA	Intergenic	Intergenic	-84490	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
27230	chr10	29386121	29386780	+	0	NA	Intergenic	Intergenic	-23084	NR_110925	102724316		NR_003930	ENSG00000291093	SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
84140	chr16	29733321	29733580	+	0	NA	Intergenic	AluSc8|SINE|Alu	12540	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
58936	chr13	19767751	19768330	+	0	NA	intron (NM_001354909, intron 2 of 8)	AluJo|SINE|Alu	14905	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
147617	chr20	62136571	62137850	+	0	NA	intron (NM_002792, intron 6 of 6)	intron (NM_002792, intron 6 of 6)	6184	NM_002792	5688		NM_002792	ENSG00000101182	PSMA7	C6|HEL-S-276|HSPC|RC6-1|XAPC7	proteasome 20S subunit alpha 7	protein-coding
119769	chr19	41299401	41300580	+	0	NA	intron (NM_144732, intron 10 of 14)	MIRb|SINE|MIR	-10182	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
90345	chr17	1191001	1191230	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	-3843	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
22033	chr1	210343171	210343780	+	0	NA	intron (NM_001170580, intron 1 of 11).2	Tigger16a|DNA|TcMar-Tigger	14109	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
149419	chr21	31198421	31199180	+	0	NA	intron (NM_001353694, intron 12 of 27)	intron (NM_001353694, intron 12 of 27)	-37860	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
68044	chr14	75229101	75229450	+	0	NA	Intergenic	L2c|LINE|L2	-49553	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
225351	chr9	34654751	34655250	+	0	NA	intron (NR_052010, intron 1 of 12)	(GT)n|Simple_repeat|Simple_repeat	1103	NR_052010	3590		NM_004512	ENSG00000137070	IL11RA	CRSDA	interleukin 11 receptor subunit alpha	protein-coding
98718	chr17	47981201	47982000	+	0	NA	exon (NM_001278198, exon 13 of 13)	exon (NM_001278198, exon 13 of 13)	10487	NM_001278198	80279		NM_025197	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding
215304	chr7	157309101	157309300	+	0	NA	Intergenic	MER41B|LTR|ERV1	-27804	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
113674	chr19	10392901	10393880	+	0	NA	exon (NM_007065, exon 6 of 8)	exon (NM_007065, exon 6 of 8)	10148	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
105530	chr17	83123071	83123430	+	0	NA	Intergenic	Intergenic	42104	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
215031	chr7	152428721	152429430	+	0	NA	intron (NM_170606, intron 1 of 58)	L2c|LINE|L2	6928	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
15437	chr1	150292971	150295050	+	0	NA	5' UTR (NM_018997, exon 1 of 2)	5' UTR (NM_018997, exon 1 of 2)	149	NM_031901	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
69500	chr14	95526321	95526650	+	0	NA	Intergenic	Intergenic	7144	NR_003002	677768		NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA
879	chr1	1639301	1639830	+	0	NA	intron (NM_033490, intron 10 of 18)	intron (NM_033490, intron 10 of 18)	6785	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
21005	chr1	202812421	202812900	+	0	NA	TTS (NR_046326)	TTS (NR_046326)	1714	NR_046326	100506696		NR_046325	ENSG00000228288	PCAT6	KDM5B-AS1|KDM5BAS1|PCAN-R1|ncRNA-a2|onco-lncRNA-96	prostate cancer associated transcript 6	ncRNA
9162	chr1	45569621	45570400	+	0	NA	TTS (NM_001202414)	TTS (NM_001202414)	-13978	NM_001195193	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
83994	chr16	29447621	29447880	+	0	NA	promoter-TSS (NR_135312)	promoter-TSS (NR_135312)	-724	NR_135312	100422558		NR_135312	ENSG00000254634	SMG1P6	-	SMG1 pseudogene 6	pseudo
15955	chr1	151839421	151841050	+	0	NA	5' UTR (NM_001136003, exon 1 of 2)	5' UTR (NM_001136003, exon 1 of 2)	322	NM_001136003	100191040		NM_001136003	ENSG00000225556	C2CD4D	FAM148D	C2 calcium dependent domain containing 4D	protein-coding
70263	chr14	101717301	101717900	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-12837	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
161525	chr3	42603751	42604180	+	0	NA	intron (NM_001349126, intron 2 of 18)	AluSz|SINE|Alu	-2887	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
57360	chr12	121781651	121782780	+	0	NA	TTS (NM_001080825)	TTS (NM_001080825)	11473	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
53646	chr12	68277771	68277930	+	0	NA	Intergenic	Intergenic	-24246	NM_020525	50616		NM_020525	ENSG00000127318	IL22	IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18	interleukin 22	protein-coding
60067	chr13	33544801	33545350	+	0	NA	intron (NM_001243476, intron 3 of 17)	AluSp|SINE|Alu	131719	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
192149	chr6	16956221	16956730	+	0	NA	Intergenic	Intergenic	-145575	NM_001190766	401236		NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
116784	chr19	18513351	18513980	+	0	NA	intron (NM_006532, intron 1 of 11)	AluY|SINE|Alu	8405	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
19866	chr1	183474221	183474580	+	0	NA	intron (NM_001174061, intron 1 of 21)	AluSq2|SINE|Alu	1901	NM_001375585	9887		NM_014837	ENSG00000116698	SMG7	C1orf16|EST1C|SGA56M	SMG7 nonsense mediated mRNA decay factor	protein-coding
104742	chr17	81673771	81673930	+	0	NA	TTS (NM_199287)	TTS (NM_199287)	7113	NM_199287	339230		NM_199287	ENSG00000185298	CCDC137	RaRF	coiled-coil domain containing 137	protein-coding
30540	chr10	79467271	79467880	+	0	NA	Intergenic	Intergenic	-21951	NM_153367	219654		NM_153367	ENSG00000165424	ZCCHC24	C10orf56|Z3CXXC8	zinc finger CCHC-type containing 24	protein-coding
230417	chr9	128124651	128125430	+	0	NA	intron (NM_198938, intron 2 of 7)	intron (NM_198938, intron 2 of 7)	2689	NM_025072	80142		NM_025072	ENSG00000148334	PTGES2	C9orf15|GBF-1|GBF1|PGES2|mPGES-2	prostaglandin E synthase 2	protein-coding
147789	chr20	62621301	62621500	+	0	NA	Intergenic	L2b|LINE|L2	-21103	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
100419	chr17	60594251	60594350	+	0	NA	Intergenic	AluSg|SINE|Alu	-5893	NM_003620	8493		NM_003620	ENSG00000170836	PPM1D	IDDGIP|JDVS|PP2C-DELTA|WIP1	protein phosphatase, Mg2+/Mn2+ dependent 1D	protein-coding
82275	chr16	15157601	15158730	+	0	NA	TTS (NR_049832).2	TTS (NR_049832).2	356	NR_037442	100500910		NR_037442	ENSG00000263918	MIR3670-1	MIR3670|hsa-mir-3670-1	microRNA 3670-1	ncRNA
133721	chr2	127378651	127379200	+	0	NA	intron (NM_001371911, intron 1 of 16)	AluJb|SINE|Alu	9050	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
114486	chr19	12753371	12753830	+	0	NA	intron (NM_017682, intron 3 of 9)	intron (NM_017682, intron 3 of 9)	1809	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
43962	chr11	93737071	93737230	+	0	NA	non-coding (NR_146090, exon 4 of 14)	non-coding (NR_146090, exon 4 of 14)	-1914	NR_002973	677822		NR_002973	ENSG00000210825	SNORA40	ACA40|SNORA40A	small nucleolar RNA, H/ACA box 40	snoRNA
57395	chr12	121821471	121821880	+	0	NA	intron (NM_001353345, intron 11 of 16)	AluSx|SINE|Alu	17666	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
55040	chr12	96394051	96394150	+	0	NA	intron (NM_002595, intron 1 of 16)	AluSg|SINE|Alu	6339	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
113773	chr19	10539201	10539630	+	0	NA	Intergenic	AluJb|SINE|Alu	-4489	NR_104025	84971		NM_032885	ENSG00000130734	ATG4D	APG4-D|APG4D|AUTL4|HsAPG4D	autophagy related 4D cysteine peptidase	protein-coding
1136	chr1	2148371	2150030	+	0	NA	intron (NR_146911, intron 5 of 15)	intron (NR_146911, intron 5 of 15)	34675	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
85513	chr16	50774251	50774750	+	0	NA	intron (NM_015247, intron 7 of 19)	MER44B|DNA|TcMar-Tigger	32085	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
163439	chr3	50589371	50589680	+	0	NA	3' UTR (NM_001377425, exon 11 of 11)	3' UTR (NM_001377425, exon 11 of 11)	-18498	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
139011	chr2	218371021	218371480	+	0	NA	Intergenic	Intergenic	-3348	NR_110573	101928513		NR_110573	ENSG00000225062	CATIP-AS1	-	CATIP antisense RNA 1	ncRNA
192092	chr6	16689371	16689530	+	0	NA	intron (NM_000332, intron 3 of 8)	AluJo|SINE|Alu	70734	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
49038	chr12	14382701	14383100	+	0	NA	intron (NM_001286515, intron 1 of 12)	intron (NM_001286515, intron 1 of 12)	-2381	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
73849	chr15	50046171	50046330	+	0	NA	intron (NM_024837, intron 4 of 27)	intron (NM_024837, intron 4 of 27)	67129	NR_073598	79895		NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
235815	chrX	49249521	49250180	+	0	NA	TTS (NM_014009)	TTS (NM_014009)	14380	NM_014008	28952		NM_014008	ENSG00000101997	CCDC22	CXorf37|JM1|RTSC2	coiled-coil domain containing 22	protein-coding
161847	chr3	45698171	45698530	+	0	NA	intron (NM_001319073, intron 2 of 20)	Charlie30a|DNA|hAT-Charlie	8954	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
184103	chr5	93801301	93801600	+	0	NA	intron (NR_028080, intron 6 of 8)	intron (NR_028080, intron 6 of 8)	-59850	NM_153216	134187		NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
102688	chr17	76131001	76131600	+	0	NA	Intergenic	Intergenic	-9256	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
154665	chr22	36352621	36353780	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	34767	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
58307	chr12	130874951	130875300	+	0	NA	intron (NM_001300796, intron 4 of 5)	AluSz|SINE|Alu	3059	NM_006325	5901		NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
187661	chr5	143186671	143186830	+	0	NA	intron (NM_001349547, intron 20 of 21)	intron (NM_001349547, intron 20 of 21)	-5750	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
8574	chr1	41370471	41370830	+	0	NA	intron (NM_001291281, intron 1 of 2)	MIRc|SINE|MIR	5019	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
122020	chr19	48613371	48613600	+	0	NA	5' UTR (NM_017708, exon 3 of 7)	5' UTR (NM_017708, exon 3 of 7)	1591	NM_017708	54854		NM_017708	ENSG00000105523	FAM83E	-	family with sequence similarity 83 member E	protein-coding
218522	chr8	53768151	53768600	+	0	NA	intron (NM_213620, intron 11 of 13)	L1MB8|LINE|L1	74667	NM_213620	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
190145	chr5	178110701	178110900	+	0	NA	Intergenic	Intergenic	-2732	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
102415	chr17	75625621	75626480	+	0	NA	TTS (NM_004259)	TTS (NM_004259)	-7384	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
86247	chr16	58251071	58251230	+	0	NA	intron (NM_001142302, intron 1 of 7)	MIRb|SINE|MIR	1214	NM_001142302	29070		NM_014157	ENSG00000103021	CFAP263	CCDC113|HSPC065	cilia and flagella associated protein 263	protein-coding
18975	chr1	169091251	169091750	+	0	NA	Intergenic	Intergenic	-4495	NR_104091	101978719		NR_104091	ENSG00000203601	LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
124279	chr19	57816351	57817000	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-1762	NM_024762	79818		NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
239300	chrY	15424551	15425600	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	-621042	NR_046504	100874056		NR_046504	ENSG00000228787	NLGN4Y-AS1	NLGN4Y-AS|NLGN4YAS	NLGN4Y antisense RNA 1	ncRNA
36155	chr11	3144051	3144350	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	21110	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
144800	chr20	36647871	36648030	+	0	NA	Intergenic	MER21C|LTR|ERVL	-1754	NM_032214	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
138508	chr2	207175251	207175350	+	0	NA	Intergenic	AluY|SINE|Alu	-8054	NM_001270943	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
123308	chr19	53572751	53572850	+	0	NA	intron (NM_001317116, intron 4 of 4)	MIR|SINE|MIR	17493	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
225678	chr9	36476071	36476230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-74952	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
45882	chr11	119751721	119752230	+	0	NA	Intergenic	MIRb|SINE|MIR	22392	NR_120587	102724301		NR_120587	ENSG00000254854	NECTIN1-DT	-	NECTIN1 divergent transcript	ncRNA
119835	chr19	41365901	41366630	+	0	NA	intron (NM_001098825, intron 1 of 3)	intron (NM_001098825, intron 1 of 3)	-2116	NM_030578	80776		NM_030578	ENSG00000123810	B9D2	ICIS-1|JBTS34|MKS10|MKSR-2|MKSR2	B9 domain containing 2	protein-coding
135583	chr2	165952101	165952300	+	0	NA	intron (NM_024753, intron 1 of 28)	MER58B|DNA|hAT-Charlie	1576	NM_024753	79809		NM_024753	ENSG00000123607	TTC21B	ATD4|CFAP60|FAP60|FLA17|IFT139|IFT139B|JBTS11|NPHP12|Nbla10696|SRTD4|THM1	tetratricopeptide repeat domain 21B	protein-coding
5087	chr1	24722001	24723080	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-22907	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
145094	chr20	38723021	38723580	+	0	NA	Intergenic	Intergenic	-1186	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
197229	chr6	68740901	68741100	+	0	NA	intron (NM_001704, intron 3 of 31)	intron (NM_001704, intron 3 of 31)	105718	NM_001704	577		NM_001704	ENSG00000135298	ADGRB3	BAI3	adhesion G protein-coupled receptor B3	protein-coding
115752	chr19	16318701	16318900	+	0	NA	Intergenic	AluJb|SINE|Alu	-6026	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
46940	chr11	134393571	134393730	+	0	NA	intron (NM_054025, intron 1 of 5)	Tigger13a|DNA|TcMar-Tigger	18268	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
198375	chr6	105462501	105462930	+	0	NA	Intergenic	Intergenic	-59633	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
229426	chr9	121355071	121355430	+	0	NA	intron (NM_001270526, intron 2 of 6)	AluSq4|SINE|Alu	15000	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
10311	chr1	64875771	64875930	+	0	NA	intron (NM_001321857, intron 4 of 24)	intron (NM_001321857, intron 4 of 24)	90699	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
141265	chr2	239946171	239946330	+	0	NA	intron (NR_136158, intron 7 of 10)	intron (NR_136158, intron 7 of 10)	-3156	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
65572	chr14	51978971	51979580	+	0	NA	Intergenic	Intergenic	-10271	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
187805	chr5	146451421	146451680	+	0	NA	intron (NM_001382548, intron 1 of 22)	AluSx|SINE|Alu	4217	NM_006706	10915		NM_006706	ENSG00000113649	TCERG1	CA150|TAF2S|Urn1	transcription elongation regulator 1	protein-coding
180962	chr5	35679171	35679530	+	0	NA	intron (NM_024867, intron 10 of 36)	intron (NM_024867, intron 10 of 36)	61487	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
33706	chr10	121069851	121069950	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	218538	NM_018117	55717		NM_018117	ENSG00000120008	WDR11	BRWD2|DR11|HH14|SRI1|WDR15	WD repeat domain 11	protein-coding
23617	chr1	230209871	230210030	+	0	NA	intron (NM_001291866, intron 3 of 15)	intron (NM_001291866, intron 3 of 15)	142712	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
37504	chr11	18411971	18413000	+	0	NA	intron (NM_002301, intron 1 of 7)	intron (NM_002301, intron 1 of 7)	167	NM_017448	3948		NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
198840	chr6	109308101	109308300	+	0	NA	intron (NR_152435, intron 31 of 45)	intron (NR_152435, intron 31 of 45)	73539	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
24867	chr10	784701	785080	+	0	NA	Intergenic	Intergenic	-95222	NM_014974	22982		NM_014974	ENSG00000151240	DIP2C	KIAA0934	disco interacting protein 2 homolog C	protein-coding
205514	chr7	18291871	18292030	+	0	NA	intron (NM_001321896, intron 1 of 12)	intron (NM_001321896, intron 1 of 12)	1858	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
165151	chr3	72083051	72083150	+	0	NA	intron (NR_104116, intron 2 of 6)	MLT1A|LTR|ERVL-MaLR	17355	NR_104116	285286		NR_104116	ENSG00000241163	LINC00877	-	long intergenic non-protein coding RNA 877	ncRNA
232718	chr9	136588621	136589080	+	0	NA	Intergenic	Intergenic	28331	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
154801	chr22	36873801	36874200	+	0	NA	intron (NM_013416, intron 7 of 8)	MIR|SINE|MIR	-3557	NR_147197	107985578		NR_147197	ENSG00000183822	NCF4-AS1	-	NCF4 antisense RNA 1	ncRNA
206361	chr7	30503651	30505300	+	0	NA	intron (NM_001199815, intron 1 of 3)	CpG	354	NM_024051	79017		NM_024051	ENSG00000006625	GGCT	C7orf24|CRF21|GCTG|GGC	gamma-glutamylcyclotransferase	protein-coding
16013	chr1	152046301	152046730	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	-9511	NM_005620	6282		NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
82622	chr16	18926201	18928380	+	0	NA	promoter-TSS (NM_015092)	promoter-TSS (NM_015092)	-882	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
87490	chr16	71799521	71799780	+	0	NA	intron (NM_001128, intron 1 of 22)	AluY|SINE|Alu	9184	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
50081	chr12	44830201	44831450	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	44836	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
7931	chr1	37509101	37509530	+	0	NA	exon (NM_001270876, exon 4 of 6)	exon (NM_001270876, exon 4 of 6)	5451	NM_001270876	64769		NM_022756	ENSG00000163875	MEAF6	C1orf149|CENP-28|EAF6|NY-SAR-91	MYST/Esa1 associated factor 6	protein-coding
134188	chr2	134322921	134323380	+	0	NA	intron (NM_001371457, intron 5 of 16)	intron (NM_001371457, intron 5 of 16)	69078	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
78549	chr15	92980101	92980500	+	0	NA	intron (NM_001271, intron 22 of 38)	AluSz6|SINE|Alu	75901	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
151136	chr21	44898921	44899280	+	0	NA	exon (NM_001303238, exon 8 of 16)	exon (NM_001303238, exon 8 of 16)	21799	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
54792	chr12	94267951	94268250	+	0	NA	intron (NM_005761, intron 21 of 30)	intron (NM_005761, intron 21 of 30)	5481	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
150809	chr21	43940271	43940430	+	0	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	14952	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
220455	chr8	100408771	100408930	+	0	NA	Intergenic	Intergenic	26087	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
178641	chr4	152365051	152365350	+	0	NA	intron (NM_033632, intron 2 of 11)	L2c|LINE|L2	-12374	NM_018315	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
95218	chr17	35252421	35252850	+	0	NA	intron (NM_144975, intron 1 of 4)	L1ME1|LINE|L1	9563	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
212433	chr7	128360971	128362400	+	0	NA	promoter-TSS (NM_001114726)	promoter-TSS (NM_001114726)	0	NM_001174164	401399		NM_001114726	ENSG00000224940	PRRT4	-	proline rich transmembrane protein 4	protein-coding
56383	chr12	113176221	113176480	+	0	NA	intron (NM_024072, intron 7 of 19)	AluSx|SINE|Alu	9128	NM_024072	79039		NM_024072	ENSG00000123064	DDX54	DP97	DEAD-box helicase 54	protein-coding
57025	chr12	120678601	120678800	+	0	NA	Intergenic	MIRb|SINE|MIR	-8449	NM_014730	9761		NM_014730	ENSG00000110917	MLEC	KIAA0152	malectin	protein-coding
192176	chr6	17665111	17666180	+	0	NA	intron (NM_001278209, intron 8 of 22)	intron (NM_001278209, intron 8 of 22)	-40485	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
87465	chr16	71499771	71500080	+	0	NA	Intergenic	Intergenic	-10601	NM_006961	7567		NM_006961	ENSG00000157429	ZNF19	KOX12	zinc finger protein 19	protein-coding
136869	chr2	187448071	187448430	+	0	NA	promoter-TSS (NM_001369435)	promoter-TSS (NM_001369435)	2	NM_001369435	10203		NM_005795	ENSG00000064989	CALCRL	CGRPR|CRLR|LMPHM8	calcitonin receptor like receptor	protein-coding
35581	chr11	1695751	1695850	+	0	NA	Intergenic	Intergenic	-1395	NM_001012416	440023		NM_001012416	ENSG00000205864	KRTAP5-6	KRTAP5.6	keratin associated protein 5-6	protein-coding
41517	chr11	66263751	66264130	+	0	NA	exon (NM_001134776, exon 7 of 16)	exon (NM_001134776, exon 7 of 16)	-4699	NM_030981	81876		NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
154307	chr22	31950901	31951300	+	0	NA	intron (NM_003405, intron 1 of 1)	AluSz6|SINE|Alu	-5738	NM_015372	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
31589	chr10	97351801	97352400	+	0	NA	Intergenic	Intergenic	-17371	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
14284	chr1	143777501	143777700	+	0	NA	Intergenic	MER66-int|LTR|ERV1	-14895	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
71816	chr15	22134701	22135850	+	0	NA	Intergenic	L1PA13|LINE|L1	9764	NR_028067	390539		NR_028067	ENSG00000259435	OR4N3P	OR15-2	olfactory receptor family 4 subfamily N member 3 pseudogene	pseudo
206867	chr7	37510151	37510330	+	0	NA	Intergenic	Intergenic	-60914	NM_001206480	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
142948	chr20	19075021	19075330	+	0	NA	Intergenic	Intergenic	-137467	NM_020689	57419		NM_020689	ENSG00000185052	SLC24A3	NCKX3	solute carrier family 24 member 3	protein-coding
93956	chr17	21452401	21453100	+	0	NA	Intergenic	CpG	76393	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
237518	chrX	120150271	120150630	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	-8163	NM_001099685	727940		NM_001099685	ENSG00000203989	RHOXF2B	-	Rhox homeobox family member 2B	protein-coding
72381	chr15	31371151	31371450	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	44465	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
109585	chr19	911051	911150	+	0	NA	intron (NM_138774, intron 1 of 7)	AluY|SINE|Alu	2119	NM_138774	91300		NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
207923	chr7	50665671	50666030	+	0	NA	intron (NM_001371008, intron 4 of 15)	intron (NM_001371008, intron 4 of 15)	39451	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
129474	chr2	69583821	69584650	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	59503	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
120271	chr19	42777051	42777250	+	0	NA	Intergenic	LTR13|LTR|ERVK	-11472	NM_001130167	440533		NM_182707	ENSG00000124467	PSG8	PSG1	pregnancy specific beta-1-glycoprotein 8	protein-coding
54981	chr12	96328871	96329030	+	0	NA	intron (NM_002595, intron 2 of 16)	intron (NM_002595, intron 2 of 16)	71489	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
188583	chr5	157156251	157156550	+	0	NA	Intergenic	AluJb|SINE|Alu	9864	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
4721	chr1	23331551	23332200	+	0	NA	intron (NM_001297622, intron 3 of 8).2	intron (NM_001297622, intron 3 of 8).2	12409	NM_001297622	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
76522	chr15	75046821	75047350	+	0	NA	intron (NR_125369, intron 3 of 4)	intron (NR_125369, intron 3 of 4)	3799	NM_001301105	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
156218	chr22	40336421	40337130	+	0	NA	TTS (NM_001162501)	TTS (NM_001162501)	-9725	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
116298	chr19	17765771	17766100	+	0	NA	intron (NR_169252, intron 6 of 27)	AluY|SINE|Alu	11726	NR_169258	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
185508	chr5	131321951	131322450	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1MB2|LINE|L1	58147	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
139884	chr2	230667171	230667330	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	33279	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
161341	chr3	40205021	40205280	+	0	NA	intron (NM_015460, intron 10 of 16)	intron (NM_015460, intron 10 of 16)	104548	NR_033965	440952		NR_033965	ENSG00000280739	EIF1B-AS1	-	EIF1B antisense RNA 1	ncRNA
58109	chr12	124774201	124775080	+	0	NA	Intergenic	L1ME1|LINE|L1	65031	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
219205	chr8	66661471	66662080	+	0	NA	intron (NM_025054, intron 1 of 2)	AluSc8|SINE|Alu	5456	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
176492	chr4	91437871	91438050	+	0	NA	intron (NM_001145065, intron 10 of 10)	L1HS|LINE|L1	839342	NR_125920	101929194		NR_125920		LNCPRESS2	-	lncRNA p53 regulated and ESC associated 2	ncRNA
23952	chr1	235132021	235132880	+	0	NA	intron (NR_144490, intron 9 of 9)	AluSc|SINE|Alu	-3613	NM_014765	9804		NM_014765	ENSG00000173726	TOMM20	MAS20|MOM19|TOM20	translocase of outer mitochondrial membrane 20	protein-coding
181513	chr5	43032551	43033150	+	0	NA	intron (NR_104651, intron 2 of 2)	AluSx1|SINE|Alu	7469	NM_001014279	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
1294	chr1	2337651	2338280	+	0	NA	intron (NM_024848, intron 10 of 13)	intron (NM_024848, intron 10 of 13)	14696	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
145406	chr20	41621271	41621430	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-2973	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
180616	chr5	16585421	16585680	+	0	NA	intron (NM_001034850, intron 1 of 8)	intron (NM_001034850, intron 1 of 8)	-30376	NR_109946	101929524		NR_109946	ENSG00000246214	RETREG1-AS1	-	RETREG1 antisense RNA 1	ncRNA
209813	chr7	87933501	87935400	+	0	NA	5' UTR (NM_001324418, exon 1 of 32)	5' UTR (NM_001324418, exon 1 of 32)	199	NM_021723	53616		NM_004194	ENSG00000008277	ADAM22	ADAM 22|DEE61|EIEE61|MDC2	ADAM metallopeptidase domain 22	protein-coding
128745	chr2	62039251	62039550	+	0	NA	intron (NM_001371765, intron 2 of 2)	intron (NM_001371765, intron 2 of 2)	133758	NM_152516	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
195028	chr6	35474801	35475430	+	0	NA	exon (NM_003214, exon 13 of 13)	exon (NM_003214, exon 13 of 13)	4607	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
132394	chr2	105784751	105785050	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	39837	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
140585	chr2	233366221	233366800	+	0	NA	intron (NM_152879, intron 1 of 29)	L2c|LINE|L2	12016	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
116266	chr19	17680001	17680730	+	0	NA	intron (NM_001080421, intron 1 of 41)	CpG	7834	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
63852	chr14	21527351	21527650	+	0	NA	intron (NR_111966, intron 1 of 2)	MIR1_Amn|SINE|MIR	-1154	NM_001291447	6297		NM_005407	ENSG00000165821	SALL2	COLB|HSAL2|Sal-2|ZNF795|p150(Sal2)	spalt like transcription factor 2	protein-coding
62332	chr13	99072221	99072680	+	0	NA	intron (NM_001318849, intron 1 of 54)	Tigger2|DNA|TcMar-Tigger	14244	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
151713	chr22	17631101	17631380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2418	NM_001039367	529		NM_001696	ENSG00000131100	ATP6V1E1	ARCL2C|ATP6E|ATP6E2|ATP6V1E|P31|Vma4	ATPase H+ transporting V1 subunit E1	protein-coding
111793	chr19	4448171	4448550	+	0	NA	exon (NM_001171091, exon 5 of 11)	exon (NM_001171091, exon 5 of 11)	2382	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
169903	chr3	177642401	177643480	+	0	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-173925	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
221141	chr8	119416701	119416900	+	0	NA	exon (NM_002514, exon 2 of 5)	exon (NM_002514, exon 2 of 5)	354	NM_002514	4856		NM_002514	ENSG00000136999	CCN3	IBP-9|IGFBP-9|IGFBP9|NOV|NOVh	cellular communication network factor 3	protein-coding
104411	chr17	81057201	81057630	+	0	NA	promoter-TSS (NM_001385149)	promoter-TSS (NM_001385149)	-319	NM_001385147	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
170158	chr3	183551801	183552400	+	0	NA	non-coding (NR_046687, exon 2 of 2)	non-coding (NR_046687, exon 2 of 2)	3365	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
196559	chr6	44084671	44084830	+	0	NA	Intergenic	Intergenic	-10098	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
206438	chr7	32865151	32866350	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	26010	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
99985	chr17	57671801	57673000	+	0	NA	intron (NM_138962, intron 11 of 13)	intron (NM_138962, intron 11 of 13)	-63988	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
94639	chr17	30113071	30113650	+	0	NA	Intergenic	HAL1|LINE|L1	-3447	NM_001261467	84081		NM_032141	ENSG00000126653	NSRP1	CCDC55|HSPC095|NEDSSBA|NSrp70	nuclear speckle splicing regulatory protein 1	protein-coding
3305	chr1	15356201	15356800	+	0	NA	intron (NM_052929, intron 19 of 30)	LTR24|LTR|ERV1	-12617	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
142660	chr20	5845771	5846580	+	0	NA	intron (NM_001303478, intron 3 of 3)	intron (NM_001303478, intron 3 of 3)	-65335	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
5630	chr1	26169471	26171500	+	0	NA	intron (NM_015871, intron 2 of 2)	intron (NM_015871, intron 2 of 2)	577	NM_015871	51042		NM_015871	ENSG00000142684	ZNF593	ZT86	zinc finger protein 593	protein-coding
8824	chr1	42958401	42960330	+	0	NA	promoter-TSS (NM_006516)	promoter-TSS (NM_006516)	316	NR_033967	440584		NR_033967	ENSG00000227533	SLC2A1-DT	SLC2A1-AS1	SLC2A1 divergent transcript	ncRNA
155708	chr22	39099071	39100780	+	0	NA	intron (NM_001166003, intron 1 of 5)	AluSx1|SINE|Alu	2681	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
92807	chr17	16008521	16009130	+	0	NA	intron (NM_017775, intron 7 of 9)	L2a|LINE|L2	9001	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
83068	chr16	22355501	22356150	+	0	NA	intron (NM_001802, intron 2 of 4)	LTR54|LTR|ERV1	18794	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
53428	chr12	65086351	65086450	+	0	NA	intron (NM_007191, intron 2 of 9)	intron (NM_007191, intron 2 of 9)	34905	NM_007191	11197		NM_007191	ENSG00000156076	WIF1	WIF-1	WNT inhibitory factor 1	protein-coding
180134	chr5	1327621	1328100	+	0	NA	intron (NM_030782, intron 9 of 16)	intron (NM_030782, intron 9 of 16)	17239	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
153032	chr22	23245801	23246030	+	0	NA	intron (NM_021574, intron 1 of 21)	L1MB7|LINE|L1	-16852	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
152661	chr22	21575501	21575700	+	0	NA	intron (NR_046082, intron 1 of 3)	AluSz|SINE|Alu	7886	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
183262	chr5	76433451	76433750	+	0	NA	intron (NM_006633, intron 1 of 35)	LTR33|LTR|ERVL	30315	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
169653	chr3	171460001	171461440	+	0	NA	promoter-TSS (NM_001161564)	promoter-TSS (NM_001161564)	-312	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
158783	chr3	9452351	9452850	+	0	NA	intron (NM_001349451, intron 19 of 25)	intron (NM_001349451, intron 19 of 25)	54985	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
107322	chr18	45212721	45213100	+	0	NA	promoter-TSS (NM_001242692)	promoter-TSS (NM_001242692)	-85	NM_001242692	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
89932	chr16	89731451	89731800	+	0	NA	intron (NR_110122, intron 6 of 10)	FRAM|SINE|Alu	10088	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
144214	chr20	34361551	34361880	+	0	NA	Intergenic	AluSz|SINE|Alu	-1558	NM_001257138	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
142589	chr20	5549251	5549750	+	0	NA	intron (NM_019593, intron 19 of 19)	intron (NM_019593, intron 19 of 19)	-39498	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
82755	chr16	21419301	21419500	+	0	NA	intron (NM_130464, intron 2 of 12)	intron (NM_130464, intron 2 of 12)	5978	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
115880	chr19	16570151	16570450	+	0	NA	intron (NM_024881, intron 2 of 5)	intron (NM_024881, intron 2 of 5)	2115	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
136735	chr2	181241901	181242300	+	0	NA	intron (NR_130784, intron 2 of 4)	AluJo|SINE|Alu	63552	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
102293	chr17	75336971	75337700	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	-47886	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
73413	chr15	43076251	43076550	+	0	NA	intron (NM_174916, intron 3 of 46)	SVA_E|Retroposon|SVA	29638	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
33223	chr10	114085821	114086080	+	0	NA	Intergenic	Intergenic	42084	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
152805	chr22	21847251	21848000	+	0	NA	intron (NM_138957, intron 1 of 7)	SVA_B|Retroposon|SVA	20020	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
124246	chr19	57487351	57488650	+	0	NA	intron (NM_001098496, intron 1 of 2)	CpG	250	NM_001098493	79744		NM_024691	ENSG00000105136	ZNF419	ZAPHIR|ZNF419A	zinc finger protein 419	protein-coding
111694	chr19	4275371	4275930	+	0	NA	Intergenic	L1MB7|LINE|L1	-3419	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
151614	chr22	12174501	12174700	+	0	NA	Intergenic	Intergenic	277194	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
129102	chr2	65125051	65126050	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSz|SINE|Alu	4556	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
222459	chr8	139700511	139700650	+	0	NA	intron (NR_104210, intron 1 of 3)	intron (NR_104210, intron 1 of 3)	2543	NR_104210	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
74556	chr15	60525251	60525550	+	0	NA	intron (NR_120339, intron 4 of 5)	intron (NR_120339, intron 4 of 5)	46222	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
44857	chr11	114162071	114162230	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	-95656	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
55611	chr12	106952921	106953350	+	0	NA	Intergenic	Intergenic	-2587	NM_001319666	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
51619	chr12	52906571	52906730	+	0	NA	intron (NM_001256293, intron 1 of 8)	intron (NM_001256293, intron 1 of 8)	-1574	NM_002273	3856		NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
234599	chrX	19794571	19794730	+	0	NA	intron (NM_001353892, intron 2 of 17)	AluY|SINE|Alu	5123	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
104597	chr17	81405751	81406330	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-5262	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
213626	chr7	139623351	139623850	+	0	NA	intron (NM_022740, intron 6 of 14)	intron (NM_022740, intron 6 of 14)	99915	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
236107	chrX	57102971	57103130	+	0	NA	Intergenic	LTR3A|LTR|ERVK	18496	NM_001006681	474343		NM_001006681	ENSG00000186787	SPIN2B	SPIN-2|SPIN-2B|SPIN2_duplicate|TDRD26|dJ323P24.2	spindlin family member 2B	protein-coding
169754	chr3	172536771	172537530	+	0	NA	Intergenic	Intergenic	-13720	NM_003810	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
158684	chr3	5190471	5190930	+	0	NA	intron (NM_014674, intron 1 of 11)	intron (NM_014674, intron 1 of 11)	2993	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
106109	chr18	9172101	9172300	+	0	NA	intron (NM_001204056, intron 1 of 11)	L1PA11|LINE|L1	34637	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
113120	chr19	8304851	8305380	+	0	NA	exon (NM_016579, exon 2 of 5)	exon (NM_016579, exon 2 of 5)	3243	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
121991	chr19	48510051	48511190	+	0	NA	intron (NM_001080434, intron 2 of 15)	intron (NM_001080434, intron 2 of 15)	2569	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
225857	chr9	38241401	38241900	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-151052	NM_000692	219		NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
114605	chr19	12958771	12959180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1752	NM_052850	90480		NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1|mL64	GADD45G interacting protein 1	protein-coding
111085	chr19	3181851	3181950	+	0	NA	Intergenic	AluSg4|SINE|Alu	3131	NM_003775	8698		NM_003775	ENSG00000125910	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
149630	chr21	33413101	33413500	+	0	NA	intron (NM_001329128, intron 2 of 7)	intron (NM_001329128, intron 2 of 7)	9887	NM_005534	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
193687	chr6	31102271	31103030	+	0	NA	Intergenic	L1M1|LINE|L1	9925	NM_014070	29113		NM_014070	ENSG00000204542	C6orf15	STG	chromosome 6 open reading frame 15	protein-coding
174903	chr4	49096001	49096300	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	109508	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
223286	chr8	143739171	143739330	+	0	NA	intron (NM_001381874, intron 2 of 13)	intron (NM_001381874, intron 2 of 13)	5111	NM_001381874	642574		NM_001381874	ENSG00000203499	IQANK1	CACClnc|FAM83H-AS1|FAM83HAS1|onco-lncRNA-3	IQ motif and ankyrin repeat containing 1	protein-coding
64245	chr14	23119101	23120390	+	0	NA	promoter-TSS (NM_001805)	promoter-TSS (NM_001805)	-490	NM_001805	1053		NM_001805	ENSG00000092067	CEBPE	C/EBP-epsilon|CRP1|IMD108|SGD1|c/EBP epsilon	CCAAT enhancer binding protein epsilon	protein-coding
168548	chr3	146543001	146543200	+	0	NA	intron (NM_021105, intron 1 of 8)	L2b|LINE|L2	1455	NM_001363872	5359		NM_021105	ENSG00000188313	PLSCR1	MMTRA1B	phospholipid scramblase 1	protein-coding
21834	chr1	207343701	207343900	+	0	NA	intron (NM_001114752, intron 10 of 10)	L1MA4A|LINE|L1	22122	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
158095	chr22	49999171	50000130	+	0	NA	intron (NM_001371417, intron 7 of 14)	CpG-19319	13115	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
126841	chr2	31319721	31320180	+	0	NA	Intergenic	Intergenic	85798	NM_014600	30845		NM_014600	ENSG00000013016	EHD3	PAST3	EH domain containing 3	protein-coding
118015	chr19	34175721	34176330	+	0	NA	intron (NM_001384434, intron 1 of 9).2	AluSx1|SINE|Alu	3521	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
114955	chr19	13992571	13992930	+	0	NA	intron (NM_002918, intron 2 of 20)	intron (NM_002918, intron 2 of 20)	13570	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
99075	chr17	48953071	48953630	+	0	NA	Intergenic	Intergenic	-8508	NM_001317192	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
45425	chr11	118395771	118396850	+	0	NA	intron (NM_004788, intron 19 of 19)	intron (NM_004788, intron 19 of 19)	-5079	NR_033759	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
60557	chr13	41487971	41488950	+	0	NA	Intergenic	L1M1|LINE|L1	30910	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
69648	chr14	97874501	97874900	+	0	NA	Intergenic	Intergenic	103424	NR_015430	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
45373	chr11	118303501	118303700	+	0	NA	Intergenic	Intergenic	-1130	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
49759	chr12	31752401	31753230	+	0	NA	Intergenic	L1MB7|LINE|L1	-23641	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
174653	chr4	40763221	40763530	+	0	NA	intron (NM_024677, intron 4 of 11)	intron (NM_024677, intron 4 of 11)	13420	NM_024677	79730		NM_024677	ENSG00000179299	NSUN7	-	NOP2/Sun RNA methyltransferase family member 7	protein-coding
173380	chr4	7939201	7940700	+	0	NA	promoter-TSS (NM_001134647)	promoter-TSS (NM_001134647)	-24	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
159631	chr3	15294621	15296250	+	0	NA	intron (NM_004844, intron 3 of 8)	Tigger17c|DNA|TcMar-Tigger	37151	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
43944	chr11	93611901	93612600	+	0	NA	Intergenic	Intergenic	-49432	NM_033395	85459		NM_033395	ENSG00000166004	CEP295	KIAA1731|SCKL11	centrosomal protein 295	protein-coding
71794	chr15	21720571	21721460	+	0	NA	Intergenic	Intergenic	-2708	NR_135695	102724760		NR_135695		LOC102724760	-	immunoglobulin heavy variable 1/OR15-1 pseudogene	pseudo
98680	chr17	47862651	47863230	+	0	NA	Intergenic	Intergenic	-7243	NM_199262	80320		NM_199262	ENSG00000189120	SP6	AI1K|EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
33926	chr10	124606701	124607100	+	0	NA	intron (NM_022126, intron 6 of 6)	(CCCTGT)n|Simple_repeat|Simple_repeat	-97128	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
44165	chr11	96214871	96216980	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-125513	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
184738	chr5	109695751	109696750	+	0	NA	intron (NM_002372, intron 1 of 21)	AluSc5|SINE|Alu	6884	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
189509	chr5	173324121	173324380	+	0	NA	intron (NM_003714, intron 2 of 3)	intron (NM_003714, intron 2 of 3)	5253	NM_003714	8614		NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
200136	chr6	130260701	130262200	+	0	NA	intron (NM_001258275, intron 2 of 13)	Harlequin-int|LTR|ERV1	-38499	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
237381	chrX	119441271	119441430	+	0	NA	intron (NM_145305, intron 3 of 4)	L1HS|LINE|L1	26912	NR_134915	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
160854	chr3	33113791	33115530	+	0	NA	intron (NM_006371, intron 1 of 6)	intron (NM_006371, intron 1 of 6)	646	NM_006371	10491		NM_006371	ENSG00000170275	CRTAP	CASP|LEPREL3|OI7|P3H5	cartilage associated protein	protein-coding
100630	chr17	63611101	63611660	+	0	NA	Intergenic	Intergenic	10485	NM_016360	51204		NM_016360	ENSG00000136463	TACO1	CCDC44|MC4DN8	translational activator of cytochrome c oxidase I	protein-coding
77177	chr15	80105601	80105800	+	0	NA	intron (NM_001242919, intron 1 of 5)	intron (NM_001242919, intron 1 of 5)	7284	NM_001242919	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
146534	chr20	49947771	49947930	+	0	NA	intron (NM_018683, intron 4 of 5)	AluYg6|SINE|Alu	11453	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
163610	chr3	51993501	51994330	+	0	NA	exon (NM_000992, exon 4 of 4)	exon (NM_000992, exon 4 of 4)	1980	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
88858	chr16	87681901	87682500	+	0	NA	intron (NM_020655, intron 2 of 4)	Charlie22a|DNA|hAT-Charlie	79692	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
176456	chr4	89301251	89301430	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	6460	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
30608	chr10	80191521	80192080	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	12691	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
131807	chr2	98589071	98589230	+	0	NA	3' UTR (NM_001351426, exon 26 of 26)	3' UTR (NM_001351426, exon 26 of 26)	19362	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
21017	chr1	202926471	202928330	+	0	NA	promoter-TSS (NM_021633)	promoter-TSS (NM_021633)	-166	NM_001303109	59349		NM_021633	ENSG00000117153	KLHL12	C3IP1|DKIR	kelch like family member 12	protein-coding
183258	chr5	76426771	76427130	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	23665	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
201809	chr6	150009501	150009700	+	0	NA	Intergenic	AluJo|SINE|Alu	-4456	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
62170	chr13	97339221	97339700	+	0	NA	intron (NM_001382653, intron 5 of 8)	intron (NM_001382653, intron 5 of 8)	-94709	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
44190	chr11	96264801	96265200	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-76438	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
196777	chr6	45589351	45589780	+	0	NA	Intergenic	Intergenic	167290	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
48634	chr12	10390951	10391330	+	0	NA	intron (NM_001199805, intron 6 of 12)	AluSq2|SINE|Alu	-1099	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
193719	chr6	31195671	31196400	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1725	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
174754	chr4	47031421	47032080	+	0	NA	intron (NM_000812, intron 1 of 8)	intron (NM_000812, intron 1 of 8)	183	NM_000812	2560		NM_000812	ENSG00000163288	GABRB1	DEE45|EIEE45	gamma-aminobutyric acid type A receptor subunit beta1	protein-coding
117539	chr19	20841421	20841500	+	0	NA	Intergenic	L1PA4|LINE|L1	65156	NM_001355197	7617		NM_001009883	ENSG00000160229	ZNF66	ZNF66P	zinc finger protein 66	protein-coding
3886	chr1	17016751	17017200	+	0	NA	Intergenic	AluY|SINE|Alu	-5047	NM_001141973	23400		NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9|SPG78	ATPase cation transporting 13A2	protein-coding
75458	chr15	65856771	65857250	+	0	NA	Intergenic	Intergenic	-12481	NM_004663	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
68062	chr14	75256651	75256950	+	0	NA	Intergenic	AluSx|SINE|Alu	-22028	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
114861	chr19	13861501	13862950	+	0	NA	intron (NR_146095, intron 1 of 1)	intron (NR_146095, intron 1 of 1)	189	NR_146095	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
173234	chr4	6921701	6922100	+	0	NA	intron (NM_020773, intron 1 of 13)	AluSg|SINE|Alu	12074	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
235691	chrX	48719871	48721500	+	0	NA	Intergenic	Intergenic	23951	NM_003173	6839		NM_003173	ENSG00000101945	SUV39H1	H3-K9-HMTase 1|KMT1A|MG44|SUV39H	SUV39H1 histone lysine methyltransferase	protein-coding
170162	chr3	183555471	183556630	+	0	NA	promoter-TSS (NM_130446)	promoter-TSS (NM_130446)	-344	NM_130446	89857		NM_130446	ENSG00000172578	KLHL6	-	kelch like family member 6	protein-coding
67186	chr14	68835421	68835880	+	0	NA	Intergenic	L1MA4|LINE|L1	-39407	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
133966	chr2	130666701	130666900	+	0	NA	Intergenic	Intergenic	-13250	NR_023391	100132708		NM_032248	ENSG00000290699	CYP4F30P	C2orf14	cytochrome P450 family 4 subfamily F member 30, pseudogene	pseudo
88151	chr16	81643071	81643230	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	-22204	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
7052	chr1	31957371	31958300	+	0	NA	Intergenic	Intergenic	-19467	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
199029	chr6	111258171	111260300	+	0	NA	promoter-TSS (NM_153369)	promoter-TSS (NM_153369)	-104	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
231169	chr9	129891721	129892650	+	0	NA	intron (NM_015033, intron 16 of 16)	intron (NM_015033, intron 16 of 16)	22580	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
78478	chr15	92903831	92905050	+	0	NA	promoter-TSS (NR_036136)	promoter-TSS (NR_036136)	41	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
101167	chr17	65121451	65121650	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-15820	NM_001081955	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
123316	chr19	53577851	53578330	+	0	NA	3' UTR (NM_001253801, exon 5 of 5)	3' UTR (NM_001253801, exon 5 of 5)	22783	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
138516	chr2	207283151	207283530	+	0	NA	Intergenic	Intergenic	-13916	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA
23605	chr1	230123471	230124080	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	56537	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
186185	chr5	134211901	134212650	+	0	NA	intron (NM_002715, intron 1 of 6)	Tigger1|DNA|TcMar-Tigger	13279	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
168989	chr3	152412051	152412780	+	0	NA	intron (NM_001314057, intron 3 of 11)	MER5A|DNA|hAT-Charlie	-71425	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
219463	chr8	73240421	73240680	+	0	NA	TTS (NM_001243237)	TTS (NM_001243237)	18952	NM_001243237	100130301		NM_001243237	ENSG00000274443	C8orf89	-	chromosome 8 open reading frame 89	protein-coding
203850	chr7	1452171	1452330	+	0	NA	intron (NM_182924, intron 1 of 16)	CpG	7220	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
200614	chr6	136766071	136766230	+	0	NA	intron (NM_005923, intron 1 of 29)	intron (NM_005923, intron 1 of 29)	-17897	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
11124	chr1	86446021	86446280	+	0	NA	intron (NM_006536, intron 10 of 13)	intron (NM_006536, intron 10 of 13)	21979	NM_006536	9635		NM_006536	ENSG00000137975	CLCA2	CACC|CACC3|CLCRG2|CaCC-3	chloride channel accessory 2	protein-coding
138831	chr2	216410571	216411150	+	0	NA	Intergenic	MIRc|SINE|MIR	-1624	NM_014140	50485		NM_014140	ENSG00000138375	SMARCAL1	HARP|HHARP	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1	protein-coding
85171	chr16	46813221	46813680	+	0	NA	intron (NM_001001436, intron 2 of 3)	L2c|LINE|L2	17598	NR_145837	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
191332	chr6	7106251	7107300	+	0	NA	promoter-TSS (NM_001168344)	promoter-TSS (NM_001168344)	-968	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
165071	chr3	71461471	71462130	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluSg7|SINE|Alu	80289	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
81179	chr16	4468551	4469050	+	0	NA	intron (NM_001351995, intron 3 of 5)	L1PA16|LINE|L1	5825	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
86990	chr16	68227071	68227750	+	0	NA	3' UTR (NM_004555, exon 11 of 11)	3' UTR (NM_004555, exon 11 of 11)	6089	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
72002	chr15	25860771	25861350	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	2142	NM_024490	57194		NM_024490	ENSG00000206190	ATP10A	ATP10C|ATPVA|ATPVC	ATPase phospholipid transporting 10A (putative)	protein-coding
199323	chr6	113531551	113531750	+	0	NA	Intergenic	L1PA2|LINE|L1	-98203	NR_149098	105377957		NR_149098	ENSG00000232316	LINC02518	-	long intergenic non-protein coding RNA 2518	ncRNA
105945	chr18	3607101	3607300	+	0	NA	intron (NR_119377, intron 2 of 2)	AluJr|SINE|Alu	3463	NR_119377	84777		NM_032691		DLGAP1-AS2	DLPAP1-AS2	DLGAP1 antisense RNA 2	ncRNA
161919	chr3	46013271	46013430	+	0	NA	Intergenic	Intergenic	14133	NM_005283	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
127553	chr2	42344551	42344950	+	0	NA	intron (NM_001319038, intron 2 of 2)	AluY|SINE|Alu	15288	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
31492	chr10	96650721	96651250	+	0	NA	intron (NM_152309, intron 6 of 16)	intron (NM_152309, intron 6 of 16)	-63973	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
131586	chr2	96859671	96861230	+	0	NA	3' UTR (NM_017789, exon 15 of 15)	3' UTR (NM_017789, exon 15 of 15)	-2434	NM_016466	51239		NM_016466	ENSG00000213337	ANKRD39	-	ankyrin repeat domain 39	protein-coding
159709	chr3	15638571	15638730	+	0	NA	intron (NM_001281726, intron 2 of 2)	Tigger3a|DNA|TcMar-Tigger	36681	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
50302	chr12	46430471	46430700	+	0	NA	intron (NR_125381, intron 2 of 2)	intron (NR_125381, intron 2 of 2)	46478	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
154538	chr22	36156571	36157450	+	0	NA	intron (NM_030644, intron 1 of 4)	intron (NM_030644, intron 1 of 4)	3745	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
216591	chr8	22041321	22041580	+	0	NA	Intergenic	Intergenic	-1303	NM_001304478	8822		NM_003867	ENSG00000158815	FGF17	FGF-13|FGF-17|HH20	fibroblast growth factor 17	protein-coding
133998	chr2	130839401	130839830	+	0	NA	intron (NM_001375900, intron 1 of 12)	ERVL-int|LTR|ERVL	2701	NM_001375901	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
130683	chr2	86486851	86487450	+	0	NA	intron (NM_001146688, intron 21 of 25)	intron (NM_001146688, intron 21 of 25)	45689	NM_001146688	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
106090	chr18	9141201	9141430	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	3752	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
225432	chr9	35074251	35074350	+	0	NA	intron (NM_004629, intron 13 of 13)	intron (NM_004629, intron 13 of 13)	-1632	NM_001354927	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
97798	chr17	44772421	44773350	+	0	NA	exon (NM_002390, exon 9 of 27)	exon (NM_002390, exon 9 of 27)	13897	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
232706	chr9	136551771	136552600	+	0	NA	Intergenic	Intergenic	4343	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
13389	chr1	113940351	113942480	+	0	NA	exon (NM_001369807, exon 2 of 16)	exon (NM_001369807, exon 2 of 16)	-9730	NM_198269	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
229646	chr9	124254321	124254780	+	0	NA	Intergenic	Intergenic	-3056	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
85878	chr16	57049901	57050800	+	0	NA	intron (NM_001384955, intron 23 of 47)	intron (NM_001384955, intron 23 of 47)	-42233	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
50971	chr12	49554601	49555280	+	0	NA	intron (NM_001314030, intron 11 of 14)	intron (NM_001314030, intron 11 of 14)	11499	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
152372	chr22	20510421	20510680	+	0	NA	intron (NM_001293237, intron 1 of 16)	MLT1E2|LTR|ERVL-MaLR	2503	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
220578	chr8	100826501	100827650	+	0	NA	Intergenic	Intergenic	-104987	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
199247	chr6	111837601	111838420	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	35061	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
86965	chr16	68137371	68137750	+	0	NA	intron (NM_173165, intron 3 of 9)	MIRc|SINE|MIR	52190	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
55733	chr12	108320671	108320830	+	0	NA	promoter-TSS (NM_001142345)	promoter-TSS (NM_001142345)	-88	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
129140	chr2	65416971	65417400	+	0	NA	intron (NM_181784, intron 1 of 5)	intron (NM_181784, intron 1 of 5)	15414	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
93253	chr17	17957871	17958700	+	0	NA	intron (NM_001082968, intron 1 of 14)	MIR1_Amn|SINE|MIR	14115	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
61934	chr13	78602701	78602900	+	0	NA	intron (NM_006237, intron 1 of 1)	intron (NM_006237, intron 1 of 1)	752	NM_006237	5457		NM_006237	ENSG00000152192	POU4F1	ATITHS|BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding
233148	chr9	137166621	137166980	+	0	NA	intron (NM_001185090, intron 20 of 20)	intron (NM_001185090, intron 20 of 20)	2470	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
229990	chr9	126838871	126839030	+	0	NA	TTS (NM_001135776)	TTS (NM_001135776)	-21689	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
185337	chr5	126843421	126843680	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	66414	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
200713	chr6	137495251	137496000	+	0	NA	Intergenic	CpG	-1231	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
46297	chr11	124875921	124877600	+	0	NA	promoter-TSS (NM_001370364)	promoter-TSS (NM_001370364)	-54	NR_163414	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
205195	chr7	7699671	7700030	+	0	NA	intron (NM_002947, intron 2 of 7)	intron (NM_002947, intron 2 of 7)	18757	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
10274	chr1	64747371	64747530	+	0	NA	intron (NM_001366165, intron 1 of 11)	intron (NM_001366165, intron 1 of 11)	2375	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
216417	chr8	19015051	19015150	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-1397	NM_015310	23362		NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
137211	chr2	191218301	191218600	+	0	NA	Intergenic	Intergenic	-26954	NM_001330237	4430		NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
80229	chr16	2189421	2190100	+	0	NA	intron (NM_020764, intron 3 of 19)	intron (NM_020764, intron 3 of 19)	6845	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
52154	chr12	54276151	54276750	+	0	NA	intron (NR_157844, intron 1 of 1)	MER47A|DNA|TcMar-Tigger	3672	NM_012117	23468		NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A|HP1alpha	chromobox 5	protein-coding
213479	chr7	139041001	139042200	+	0	NA	Intergenic	MIR|SINE|MIR	2557	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
37339	chr11	14886201	14886600	+	0	NA	intron (NM_024514, intron 1 of 4)	intron (NM_024514, intron 1 of 4)	5271	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
48353	chr12	9403621	9403980	+	0	NA	intron (NR_144634, intron 2 of 8)	intron (NR_144634, intron 2 of 8)	3614	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
143344	chr20	25855151	25855450	+	0	NA	Intergenic	Intergenic	-1279	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
22740	chr1	224343601	224343880	+	0	NA	Intergenic	L1M4|LINE|L1	-13139	NR_102347	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
130784	chr2	86849151	86849750	+	0	NA	intron (NM_172213, intron 3 of 5)	L1MB7|LINE|L1	-12375	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
4579	chr1	22067721	22068200	+	0	NA	intron (NM_044472, intron 1 of 5)	AluJb|SINE|Alu	15251	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
58315	chr12	131046871	131047030	+	0	NA	intron (NM_001330497, intron 14 of 25)	intron (NM_001330497, intron 14 of 25)	-52974	NR_131950	105755954		NR_131950		ADGRD1-AS1	LACAT8	ADGRD1 antisense RNA 1	ncRNA
19409	chr1	174169101	174169500	+	0	NA	intron (NM_001366447, intron 1 of 20)	AluSg|SINE|Alu	9780	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
9302	chr1	46487551	46488280	+	0	NA	Intergenic	Intergenic	-1921	NM_172225	127343		NM_147192	ENSG00000197587	DMBX1	Atx|MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
51046	chr12	49786551	49786850	+	0	NA	Intergenic	AluJr|SINE|Alu	41713	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
54071	chr12	76038471	76038830	+	0	NA	3' UTR (NM_004537, exon 15 of 15)	3' UTR (NM_004537, exon 15 of 15)	-6874	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
50748	chr12	48998001	48998500	+	0	NA	promoter-TSS (NR_147178)	promoter-TSS (NR_147178)	-97	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
12841	chr1	110061551	110062180	+	0	NA	intron (NM_006492, intron 2 of 3)	intron (NM_006492, intron 2 of 3)	8807	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
145685	chr20	45003421	45003680	+	0	NA	intron (NM_006282, intron 9 of 10)	intron (NM_006282, intron 9 of 10)	37038	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
5259	chr1	25030471	25031240	+	0	NA	Intergenic	Intergenic	7352	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
156206	chr22	40321821	40322330	+	0	NA	intron (NM_015088, intron 20 of 20)	intron (NM_015088, intron 20 of 20)	-24425	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
29538	chr10	70982321	70983080	+	0	NA	Intergenic	Intergenic	43647	NR_134314	105378349		NR_134313	ENSG00000259267	LINC02622	-	long intergenic non-protein coding RNA 2622	ncRNA
10754	chr1	76331021	76331280	+	0	NA	intron (NR_146056, intron 2 of 5)	intron (NR_146056, intron 2 of 5)	256404	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
141403	chr2	240881971	240882200	+	0	NA	Intergenic	L1ME2|LINE|L1	9950	NM_024861	79919		NM_024861	ENSG00000172478	MAB21L4	C2orf54	mab-21 like 4	protein-coding
185516	chr5	131328571	131328730	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1MEh|LINE|L1	64597	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
112951	chr19	7772471	7773430	+	0	NA	Intergenic	MER50|LTR|ERV1	9707	NR_026709	10332		NM_014257	ENSG00000104938	CLEC4M	CD209L|CD299|DC-SIGN2|DC-SIGNR|DCSIGNR|HP10347|L-SIGN|LSIGN	C-type lectin domain family 4 member M	protein-coding
122904	chr19	50566321	50566830	+	0	NA	intron (NM_001080457, intron 1 of 2)	intron (NM_001080457, intron 1 of 2)	1860	NM_001080457	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
184390	chr5	98877771	98878130	+	0	NA	intron (NR_157078, intron 24 of 36)	L1MCc|LINE|L1	-50612	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
180958	chr5	35668601	35669000	+	0	NA	intron (NM_144722, intron 9 of 9)	intron (NM_144722, intron 9 of 9)	50937	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
18085	chr1	160678201	160678400	+	0	NA	TTS (NM_001778)	TTS (NM_001778)	-30989	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
81668	chr16	11075401	11075600	+	0	NA	intron (NM_001243403, intron 18 of 20)	AluJr|SINE|Alu	130936	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
185831	chr5	132460951	132461330	+	0	NA	intron (NR_161242, intron 3 of 3)	L2b|LINE|L2	29633	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
121728	chr19	47714321	47714580	+	0	NA	intron (NM_014601, intron 1 of 5)	L1MC|LINE|L1	1028	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
239193	chrY	12907501	12908250	+	0	NA	intron (NR_136716, intron 2 of 14)	AluSc8|SINE|Alu	2170	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
115768	chr19	16340171	16340330	+	0	NA	Intergenic	Intergenic	15424	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
211499	chr7	105238171	105238330	+	0	NA	intron (NM_001350741, intron 2 of 16)	(ATC)n|Simple_repeat|Simple_repeat	30827	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
67208	chr14	68934151	68934450	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	45002	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
37137	chr11	13381621	13381880	+	0	NA	intron (NR_147788, intron 18 of 19)	intron (NR_147788, intron 18 of 19)	58529	NM_001297742	84280		NM_032320	ENSG00000148925	BTBD10	GMRP-1|GMRP1	BTB domain containing 10	protein-coding
5488	chr1	25689801	25690600	+	0	NA	intron (NM_001385184, intron 2 of 6)	intron (NM_001385184, intron 2 of 6)	-5955	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
12148	chr1	100134471	100134630	+	0	NA	intron (NM_019083, intron 1 of 10)	intron (NM_019083, intron 1 of 10)	1400	NR_135078	54482		NM_019083	ENSG00000122435	TRMT13	CCDC76	tRNA methyltransferase 13 homolog	protein-coding
145418	chr20	43448201	43448400	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-9596	NR_034009	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
122654	chr19	49856251	49859000	+	0	NA	intron (NR_130963, intron 6 of 12)	intron (NR_130963, intron 6 of 12)	1664	NR_110730	101928378		NR_110730		PTOV1-AS2	-	PTOV1 antisense RNA 2	ncRNA
3165	chr1	12617221	12618700	+	0	NA	5' UTR (NM_004753, exon 1 of 6)	5' UTR (NM_004753, exon 1 of 6)	250	NM_004753	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
112601	chr19	6731821	6732280	+	0	NA	exon (NM_001080452, exon 13 of 18)	exon (NM_001080452, exon 13 of 18)	4728	NR_106849	102465474		NR_106849	ENSG00000283950	MIR6791	hsa-mir-6791	microRNA 6791	ncRNA
180608	chr5	16464851	16466260	+	0	NA	exon (NM_033414, exon 1 of 6)	exon (NM_033414, exon 1 of 6)	245	NM_033414	90441		NM_033414	ENSG00000173545	ZNF622	ZPR9	zinc finger protein 622	protein-coding
147395	chr20	58694951	58695400	+	0	NA	intron (NM_001204872, intron 4 of 12)	(GT)n|Simple_repeat|Simple_repeat	2375	NM_024663	79716		NM_024663	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase like 1	protein-coding
130266	chr2	84864351	84864650	+	0	NA	intron (NM_001307978, intron 2 of 4)	LTR32|LTR|ERVL	16584	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
29769	chr10	72257151	72257880	+	0	NA	Intergenic	Intergenic	-16409	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
170934	chr3	194313651	194314300	+	0	NA	Intergenic	(CAGCCT)n|Simple_repeat|Simple_repeat	-1171	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
238201	chrX	137080351	137080450	+	0	NA	Intergenic	L1PA3|LINE|L1	-46405	NM_054021	83550		NM_054021	ENSG00000165370	GPR101	GPCR6|PAGH2|PITA2	G protein-coupled receptor 101	protein-coding
104700	chr17	81536221	81537130	+	0	NA	exon (NM_001077182, exon 4 of 5)	exon (NM_001077182, exon 4 of 5)	8298	NM_012418	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
210107	chr7	97929371	97929530	+	0	NA	intron (NR_147989, intron 2 of 18)	intron (NR_147989, intron 2 of 18)	-1009	NM_001352496	440		NM_001673	ENSG00000070669	ASNS	ASNSD|TS11	asparagine synthetase (glutamine-hydrolyzing)	protein-coding
192056	chr6	16526571	16527130	+	0	NA	intron (NM_000332, intron 5 of 8)	intron (NM_000332, intron 5 of 8)	233334	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
13187	chr1	112614421	112615500	+	0	NA	intron (NM_001308264, intron 2 of 13)	intron (NM_001308264, intron 2 of 13)	4181	NM_138727	54879		NM_017744	ENSG00000007341	ST7L	FAM4B|ST7R|STLR	suppression of tumorigenicity 7 like	protein-coding
208339	chr7	66477671	66477830	+	0	NA	Intergenic	Intergenic	-15882	NR_134573	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
123537	chr19	54359051	54360030	+	0	NA	intron (NM_021706, intron 3 of 8).2	intron (NM_021706, intron 3 of 8).2	5391	NR_110279	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
138337	chr2	203830251	203830550	+	0	NA	Intergenic	Intergenic	-37371	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
131978	chr2	100242971	100243130	+	0	NA	intron (NR_103730, intron 1 of 2)	OldhAT1|DNA|hAT-Ac	34796	NR_103730	150577		NM_001102655	ENSG00000232084	LINC01104	-	long intergenic non-protein coding RNA 1104	ncRNA
41505	chr11	66254271	66254750	+	0	NA	Intergenic	AluJo|SINE|Alu	-2784	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
24155	chr1	235858871	235859450	+	0	NA	intron (NM_001301365, intron 1 of 52)	L2a|LINE|L2	-6100	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
231010	chr9	129549971	129550880	+	0	NA	Intergenic	CpG	-58459	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
178421	chr4	147780171	147780430	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	-2295	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
53019	chr12	57548621	57548880	+	0	NA	Intergenic	Intergenic	-1294	NM_001354705	3798		NM_004984	ENSG00000155980	KIF5A	ALS25|D12S1889|MY050|NEIMY|NKHC|SPG10	kinesin family member 5A	protein-coding
139943	chr2	230824301	230825300	+	0	NA	Intergenic	Intergenic	-39385	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
42533	chr11	71449801	71450080	+	0	NA	Intergenic	Intergenic	-1547	NM_001360	1717		NM_001360	ENSG00000172893	DHCR7	SLOS	7-dehydrocholesterol reductase	protein-coding
220986	chr8	115447771	115447930	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	220163	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
112865	chr19	7597851	7598150	+	0	NA	intron (NM_020902, intron 1 of 16)	intron (NM_020902, intron 1 of 16)	2137	NM_001080429	57662		NM_020902	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA|PPP1R80	calmodulin regulated spectrin associated protein family member 3	protein-coding
166997	chr3	125936501	125936900	+	0	NA	intron (NM_001385066, intron 1 of 6)	L1PA2|LINE|L1	479	NM_001015050	200810		NM_001015050	ENSG00000291096	ALG1L1P	ALG1L|ALG1L1	ALG1 like 1, pseudogene	pseudo
81377	chr16	5025471	5025630	+	0	NA	exon (NM_016256, exon 10 of 10)	exon (NM_016256, exon 10 of 10)	-8152	NR_038913	100507589		NR_038913		NAGPA-AS1	-	NAGPA antisense RNA 1	ncRNA
238080	chrX	136200551	136200650	+	0	NA	intron (NM_001159699, intron 1 of 5)	L2b|LINE|L2	3553	NM_001330659	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
93773	chr17	20226801	20227300	+	0	NA	intron (NM_001033554, intron 2 of 5)	intron (NM_001033554, intron 2 of 5)	70978	NM_001033554	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
36867	chr11	10455071	10455230	+	0	NA	promoter-TSS (NM_001025389)	promoter-TSS (NM_001025389)	-114	NM_001025389	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
146086	chr20	47573501	47574100	+	0	NA	intron (NM_181659, intron 1 of 22)	intron (NM_181659, intron 1 of 22)	71913	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
155133	chr22	37644351	37644530	+	0	NA	intron (NM_018957, intron 7 of 17)	intron (NM_018957, intron 7 of 17)	4771	NM_001350055	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
237506	chrX	120000001	120000200	+	0	NA	Intergenic	CpG	15451	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
122753	chr19	50110171	50110550	+	0	NA	Intergenic	Intergenic	2128	NR_024229	100170216		NR_024229		SNAR-A10	-	small NF90 (ILF3) associated RNA A10	snRNA
110735	chr19	2324171	2324530	+	0	NA	intron (NM_016199, intron 2 of 3)	intron (NM_016199, intron 2 of 3)	4236	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
99493	chr17	50192151	50192250	+	0	NA	intron (NM_000088, intron 29 of 50)	intron (NM_000088, intron 29 of 50)	9431	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
47440	chr12	3491671	3491830	+	0	NA	intron (NM_019854, intron 1 of 9)	CpG	547	NM_019854	56341		NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding
19670	chr1	180852121	180852380	+	0	NA	intron (NM_004736, intron 11 of 14)	L1MD1|LINE|L1	-60647	NM_020950	57710		NM_020950	ENSG00000135835	KIAA1614	-	KIAA1614	protein-coding
198802	chr6	109008901	109010800	+	0	NA	promoter-TSS (NM_001199934)	promoter-TSS (NM_001199934)	-295	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
131301	chr2	96110751	96110850	+	0	NA	Intergenic	Intergenic	5771	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
58233	chr12	128644801	128645000	+	0	NA	intron (NM_001136103, intron 4 of 8)	intron (NM_001136103, intron 4 of 8)	179058	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
187372	chr5	141852251	141852950	+	0	NA	TTS (NM_032420)	TTS (NM_032420)	13602	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
203782	chr7	1238571	1239280	+	0	NA	Intergenic	CpG-25321	6053	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
131034	chr2	88171901	88172280	+	0	NA	5' UTR (NM_001384383, exon 1 of 7)	5' UTR (NM_001384383, exon 1 of 7)	1744	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
19521	chr1	176027971	176028130	+	0	NA	intron (NM_022457, intron 14 of 19)	THE1B|LTR|ERVL-MaLR	-59510	NR_002998	677679		NR_002998	ENSG00000252906	SCARNA3	HBI-100	small Cajal body-specific RNA 3	ncRNA
237887	chrX	131677701	131678000	+	0	NA	Intergenic	Intergenic	133776	NM_001004486	347468		NM_001004486	ENSG00000171054	OR13H1	ORX1	olfactory receptor family 13 subfamily H member 1	protein-coding
107889	chr18	56652921	56653530	+	0	NA	intron (NM_001382485, intron 1 of 26)	AluSq|SINE|Alu	1528	NM_001382485	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
88410	chr16	84655701	84655900	+	0	NA	intron (NM_024731, intron 2 of 4)	intron (NM_024731, intron 2 of 4)	7289	NM_024731	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
110869	chr19	2623751	2625100	+	0	NA	intron (NM_052847, intron 2 of 4)	AluY|SINE|Alu	-6290	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
223663	chr8	144375801	144376180	+	0	NA	intron (NM_174922, intron 1 of 14)	intron (NM_174922, intron 1 of 14)	1943	NM_174922	203054		NM_174922	ENSG00000173137	ADCK5	-	aarF domain containing kinase 5	protein-coding
208033	chr7	55884951	55885250	+	0	NA	Intergenic	Intergenic	-2356	NM_001366796	349075		NM_182633	ENSG00000178665	ZNF713	-	zinc finger protein 713	protein-coding
74066	chr15	52566901	52567230	+	0	NA	intron (NM_001306191, intron 3 of 5)	intron (NM_001306191, intron 3 of 5)	1767	NM_001330309	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
114367	chr19	12440601	12441800	+	0	NA	promoter-TSS (NM_005815)	promoter-TSS (NM_005815)	-179	NM_005815	10224		NM_005815	ENSG00000180855	ZNF443	ZK1	zinc finger protein 443	protein-coding
75810	chr15	69104121	69104780	+	0	NA	Intergenic	Intergenic	23600	NR_026949	283673		NM_173610	ENSG00000212766	EWSAT1	LINC00277|NCRNA00277|TMEM84	Ewing sarcoma associated transcript 1	ncRNA
213446	chr7	138738651	138739130	+	0	NA	intron (NM_130840, intron 14 of 20)	intron (NM_130840, intron 14 of 20)	35147	NM_130841	50617		NM_020632	ENSG00000105929	ATP6V0A4	A4|ATP6N1B|ATP6N2|DRTA3|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2	ATPase H+ transporting V0 subunit a4	protein-coding
77379	chr15	82837521	82837780	+	0	NA	Intergenic	Intergenic	28022	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
864	chr1	1621721	1622550	+	0	NA	intron (NM_001170687, intron 2 of 19)	intron (NM_001170687, intron 2 of 19)	6280	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
144842	chr20	36883071	36883430	+	0	NA	intron (NM_080628, intron 4 of 6)	AluJb|SINE|Alu	7112	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
96125	chr17	39652171	39653030	+	0	NA	intron (NM_001165938, intron 1 of 13)	L2a|LINE|L2	-12749	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
15602	chr1	150604651	150604950	+	0	NA	Intergenic	Intergenic	24333	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
54803	chr12	94546201	94546430	+	0	NA	Intergenic	Intergenic	-15474	NR_049885	100847031		NR_049885	ENSG00000266099	MIR5700	-	microRNA 5700	ncRNA
112739	chr19	7352551	7353200	+	0	NA	intron (NM_001367823, intron 1 of 28)	AluSx1|SINE|Alu	3938	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
9339	chr1	46617921	46618180	+	0	NA	Intergenic	L1PA15|LINE|L1	-1159	NM_201403	148932		NM_145279	ENSG00000142961	MOB3C	MOB1E|MOBKL2C	MOB kinase activator 3C	protein-coding
162473	chr3	48518521	48519450	+	0	NA	3' UTR (NM_001317138, exon 15 of 15)	3' UTR (NM_001317138, exon 15 of 15)	-14159	NM_001272066	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
92815	chr17	16021301	16021900	+	0	NA	intron (NM_017775, intron 7 of 9)	L2a|LINE|L2	21776	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
223764	chr8	144526451	144527480	+	0	NA	promoter-TSS (NM_001024678)	promoter-TSS (NM_001024678)	68	NM_001024678	441381		NM_001024678	ENSG00000254402	LRRC24	LRRC14OS	leucine rich repeat containing 24	protein-coding
40404	chr11	64060621	64061580	+	0	NA	intron (NM_001384466, intron 1 of 2)	intron (NM_001384466, intron 1 of 2)	24418	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
229679	chr9	124504501	124505100	+	0	NA	intron (NM_004959, intron 1 of 6)	CpG-28758	2599	NM_004959	2516		NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1	nuclear receptor subfamily 5 group A member 1	protein-coding
217005	chr8	23165501	23165700	+	0	NA	Intergenic	Intergenic	-1573	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
28363	chr10	47181201	47181600	+	0	NA	Intergenic	Intergenic	-118797	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
69426	chr14	94076371	94076730	+	0	NA	intron (NM_020414, intron 2 of 8).2	AluSg|SINE|Alu	4652	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
4829	chr1	23624121	23624950	+	0	NA	Intergenic	L2a|LINE|L2	-2799	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
70966	chr14	104694901	104695950	+	0	NA	intron (NM_032714, intron 1 of 4)	MIR3|SINE|MIR	5807	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
239342	chrY	19392051	19392350	+	0	NA	Intergenic	L1PB1|LINE|L1	110953	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
83558	chr16	28093051	28093550	+	0	NA	Intergenic	Intergenic	-29586	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
115796	chr19	16376101	16377400	+	0	NA	intron (NR_047665, intron 21 of 22)	intron (NR_047665, intron 21 of 22)	51924	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
155716	chr22	39119421	39119680	+	0	NA	Intergenic	AluSz|SINE|Alu	22306	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
56872	chr12	120288551	120288900	+	0	NA	Intergenic	AluY|SINE|Alu	-3055	NM_001385735	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
3356	chr1	15580421	15580680	+	0	NA	intron (NM_024758, intron 2 of 6)	intron (NM_024758, intron 2 of 6)	4501	NM_024758	79814		NM_024758	ENSG00000116771	AGMAT	-	agmatinase (putative)	protein-coding
206672	chr7	36368401	36368780	+	0	NA	intron (NM_001100425, intron 2 of 6)	L2a|LINE|L2	-1350	NM_001300956	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
49279	chr12	19661051	19661150	+	0	NA	Intergenic	MER74A|LTR|ERVL	220501	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
133612	chr2	126634301	126634530	+	0	NA	Intergenic	Intergenic	-21520	NM_016815	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
170078	chr3	182968771	182968930	+	0	NA	intron (NM_001308101, intron 1 of 6)	AluSx|SINE|Alu	11688	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
126223	chr2	26971871	26972030	+	0	NA	intron (NM_012326, intron 1 of 6)	intron (NM_012326, intron 1 of 6)	1313	NM_012326	22924		NM_012326	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule associated protein RP/EB family member 3	protein-coding
39691	chr11	61733271	61734250	+	0	NA	intron (NM_006133, intron 9 of 19)	L2a|LINE|L2	-18876	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
101239	chr17	66201721	66202180	+	0	NA	Intergenic	Intergenic	-9817	NM_001199165	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
231237	chr9	129975651	129976550	+	0	NA	intron (NM_001363755, intron 4 of 15)	intron (NM_001363755, intron 4 of 15)	67089	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
126347	chr2	27404851	27405230	+	0	NA	intron (NM_177983, intron 1 of 9)	intron (NM_177983, intron 1 of 9)	4551	NM_177983	5496		NM_177983	ENSG00000115241	PPM1G	PP2CG|PP2CGAMMA|PPP2CG	protein phosphatase, Mg2+/Mn2+ dependent 1G	protein-coding
227477	chr9	91152121	91152380	+	0	NA	intron (NR_135306, intron 2 of 2)	MLT2B1|LTR|ERVL	33188	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
38438	chr11	45179501	45179700	+	0	NA	intron (NM_001256695, intron 1 of 7)	MLT1A|LTR|ERVL-MaLR	-1436	NM_001384651	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
130298	chr2	84910201	84911050	+	0	NA	Intergenic	AluSx1|SINE|Alu	4969	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
230939	chr9	129411721	129412030	+	0	NA	Intergenic	MIR3|SINE|MIR	74952	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
100937	chr17	64478971	64479130	+	0	NA	intron (NM_007215, intron 7 of 7)	intron (NM_007215, intron 7 of 7)	18004	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
201998	chr6	152552601	152553180	+	0	NA	intron (NM_033071, intron 2 of 145)	intron (NM_033071, intron 2 of 145)	83961	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
77520	chr15	84697571	84698130	+	0	NA	intron (NM_001271920, intron 1 of 6)	intron (NM_001271920, intron 1 of 6)	18289	NM_014300	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
20189	chr1	193067671	193067830	+	0	NA	intron (NM_001042370, intron 1 of 9)	intron (NM_001042370, intron 1 of 9)	-7674	NM_001350852	51377		NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
203586	chr7	920401	920900	+	0	NA	intron (NM_006869, intron 3 of 10)	CpG	239	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
18959	chr1	168556721	168556980	+	0	NA	Intergenic	Intergenic	-12853	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
188175	chr5	150483771	150484130	+	0	NA	intron (NR_105061, intron 2 of 2)	AluSg|SINE|Alu	2042	NR_105061	102546298		NR_105061	ENSG00000254333	NDST1-AS1	-	NDST1 antisense RNA 1	ncRNA
166979	chr3	125697951	125698280	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-76599	NR_153417	105374312		NR_153417	ENSG00000272840	LOC105374312	-	uncharacterized LOC105374312	ncRNA
163917	chr3	52636751	52637500	+	0	NA	intron (NM_181042, intron 12 of 29)	intron (NM_181042, intron 12 of 29)	48474	NM_001350074	55193		NM_018313	ENSG00000163939	PBRM1	BAF180|PB1|RCC|SMARCH1	polybromo 1	protein-coding
137354	chr2	196153751	196153850	+	0	NA	intron (NM_004226, intron 3 of 7)	L1MC5a|LINE|L1	17778	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
85677	chr16	56362101	56362500	+	0	NA	3' UTR (NM_001323512, exon 15 of 15)	3' UTR (NM_001323512, exon 15 of 15)	62689	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
61250	chr13	49999421	49999680	+	0	NA	intron (NM_005798, intron 2 of 2)	FLAM_A|SINE|Alu	2508	NM_005798	10206		NM_005798	ENSG00000204977	TRIM13	CAR|DLEU5|LEU5|RFP2|RNF77	tripartite motif containing 13	protein-coding
140173	chr2	231642551	231643450	+	0	NA	Intergenic	Intergenic	50136	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
131850	chr2	98687451	98689130	+	0	NA	intron (NM_012214, intron 2 of 15)	Looper|DNA|PiggyBac	-24817	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
233167	chr9	137181051	137181150	+	0	NA	intron (NM_013366, intron 7 of 12)	intron (NM_013366, intron 7 of 12)	7460	NM_013366	29882		NM_013366	ENSG00000176248	ANAPC2	APC2	anaphase promoting complex subunit 2	protein-coding
62527	chr13	99540701	99541180	+	0	NA	intron (NM_004800, intron 8 of 16)	MIRb|SINE|MIR	-36172	NR_126390	104355149		NR_126390		LINC01039	-	long intergenic non-protein coding RNA 1039	ncRNA
103169	chr17	77433741	77434430	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-16664	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
149937	chr21	36316971	36317130	+	0	NA	Intergenic	L1PA7|LINE|L1	-3139	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
199268	chr6	111859501	111860300	+	0	NA	intron (NM_002037, intron 1 of 13)	MLT1C|LTR|ERVL-MaLR	13171	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
86492	chr16	67017721	67019150	+	0	NA	Intergenic	AluSx|SINE|Alu	-10714	NM_001755	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
148227	chr20	63601601	63602350	+	0	NA	intron (NM_012384, intron 4 of 9)	intron (NM_012384, intron 4 of 9)	25126	NM_012384	26205		NM_012384	ENSG00000101216	GMEB2	GMEB-2|P79PIF|PIF79	glucocorticoid modulatory element binding protein 2	protein-coding
113206	chr19	8450951	8451250	+	0	NA	intron (NM_031203, intron 1 of 16)	AluSq2|SINE|Alu	6125	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
29947	chr10	73480151	73481030	+	0	NA	intron (NM_001289969, intron 1 of 12)	AluSx1|SINE|Alu	-15162	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
224685	chr9	21294621	21295230	+	0	NA	Intergenic	Intergenic	10388	NM_002169	3442		NM_002169	ENSG00000147873	IFNA5	IFN-alpha-5|IFN-alphaG|INA5|INFA5|leIF G	interferon alpha 5	protein-coding
148343	chr20	63819071	63819300	+	0	NA	intron (NR_110081, intron 1 of 2)	intron (NR_110081, intron 1 of 2)	11109	NR_110081	101928604		NR_110081		ZBTB46-AS1	-	ZBTB46 antisense RNA 1	ncRNA
85368	chr16	50271151	50271730	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	4889	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
31965	chr10	100736071	100736830	+	0	NA	intron (NM_001374303, intron 1 of 2)	intron (NM_001374303, intron 1 of 2)	1054	NM_001304569	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
130032	chr2	74406051	74406700	+	0	NA	Intergenic	LTR43|LTR|ERV1	11342	NM_001145054	388963		NM_001145054	ENSG00000284308	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
38793	chr11	47257821	47258250	+	0	NA	promoter-TSS (NM_001130101)	promoter-TSS (NM_001130101)	39	NM_005693	10062		NM_005693	ENSG00000025434	NR1H3	LXR-a|LXRA|RLD-1	nuclear receptor subfamily 1 group H member 3	protein-coding
70282	chr14	101754721	101755580	+	0	NA	Intergenic	Intergenic	-5423	NM_001352914	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
193980	chr6	31731451	31732150	+	0	NA	intron (NM_001287594, intron 6 of 6).5	intron (NM_001287594, intron 6 of 6).5	-1537	NM_013974	23564		NM_013974	ENSG00000213722	DDAH2	DDAH|DDAHII|G6a|HEL-S-277|NG30	DDAH family member 2, ADMA-independent	protein-coding
221005	chr8	115753321	115753580	+	0	NA	Intergenic	L1PA3|LINE|L1	-84475	NM_001282903	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
180870	chr5	32843021	32843280	+	0	NA	Intergenic	Intergenic	-104293	NR_033832	340113		NR_033832	ENSG00000248279	LINC02120	-	long intergenic non-protein coding RNA 2120	ncRNA
115592	chr19	16029821	16030550	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-3528	NR_024335	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
155512	chr22	38686751	38687050	+	0	NA	3' UTR (NM_001360236, exon 5 of 5)	3' UTR (NM_001360236, exon 5 of 5)	4943	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
126431	chr2	27889771	27892180	+	0	NA	promoter-TSS (NM_022128)	promoter-TSS (NM_022128)	139	NR_028308	100302650		NR_028308		BABAM2-AS1	BRE-AS1	BABAM2 antisense RNA 1	ncRNA
211477	chr7	105110001	105110400	+	0	NA	intron (NM_182931, intron 23 of 26)	intron (NM_182931, intron 23 of 26)	95995	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
186202	chr5	134289501	134289950	+	0	NA	Intergenic	Intergenic	-63652	NM_002715	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
180345	chr5	6717521	6717830	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	4243	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
3535	chr1	16080671	16080830	+	0	NA	Intergenic	Intergenic	-7099	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
46464	chr11	128288471	128289380	+	0	NA	Intergenic	Intergenic	80159	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
109173	chr19	310401	310600	+	0	NA	intron (NM_001346105, intron 9 of 12)	CpG	-19097	NM_003712	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
28001	chr10	43143171	43143530	+	0	NA	intron (NR_135077, intron 1 of 8)	L1ME3G|LINE|L1	4905	NM_018590	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
87048	chr16	68292201	68292650	+	0	NA	intron (NM_001076785, intron 8 of 11)	intron (NM_001076785, intron 8 of 11)	18521	NM_032178	84138		NM_032178	ENSG00000103061	SLC7A6OS	EPM12|Iwr1	solute carrier family 7 member 6 opposite strand	protein-coding
182043	chr5	55855551	55855880	+	0	NA	intron (NM_001297572, intron 2 of 10)	intron (NM_001297572, intron 2 of 10)	2393	NM_001242639	133396		NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R|zcytoR17	interleukin 31 receptor A	protein-coding
154729	chr22	36461171	36461530	+	0	NA	Intergenic	L2c|LINE|L2	20290	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
7255	chr1	32356021	32356480	+	0	NA	Intergenic	AluSg|SINE|Alu	5993	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
31990	chr10	100847651	100847750	+	0	NA	Intergenic	Intergenic	-65263	NM_018121	55719		NM_018121	ENSG00000119906	SLF2	ATELS1|C10orf6|FAM178A	SMC5-SMC6 complex localization factor 2	protein-coding
36179	chr11	3202551	3203900	+	0	NA	Intergenic	Intergenic	-15107	NR_027138	283303		NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	ncRNA
76906	chr15	78018721	78019450	+	0	NA	intron (NM_144572, intron 6 of 12)	intron (NM_144572, intron 6 of 12)	-24860	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
101148	chr17	65051221	65051530	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluSp|SINE|Alu	4399	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
194303	chr6	32796771	32797550	+	0	NA	Intergenic	Intergenic	19842	NM_002120	3112		NM_002120	ENSG00000241106	HLA-DOB	DOB|HLA_DOB	major histocompatibility complex, class II, DO beta	protein-coding
224418	chr9	15142851	15143200	+	0	NA	Intergenic	Intergenic	107193	NM_001168342	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
43983	chr11	94133101	94133980	+	0	NA	intron (NM_015368, intron 1 of 4)	intron (NM_015368, intron 1 of 4)	4699	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
229697	chr9	124680971	124681330	+	0	NA	intron (NR_038975, intron 1 of 1)	Charlie1a|DNA|hAT-Charlie	-11292	NR_029611	406954		NR_029611	ENSG00000207595	MIR181A2	MIRN181A|MIRN181A2|hsa-mir-181a-2|mir-181a-2	microRNA 181a-2	ncRNA
198619	chr6	107739801	107740000	+	0	NA	intron (NM_001286408, intron 4 of 6)	intron (NM_001286408, intron 4 of 6)	-7750	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
177813	chr4	123477751	123478280	+	0	NA	Intergenic	Intergenic	78475	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
3837	chr1	16906971	16907300	+	0	NA	Intergenic	Intergenic	11155	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
48018	chr12	6937401	6939650	+	0	NA	exon (NM_001940, exon 7 of 10)	exon (NM_001940, exon 7 of 10)	-4913	NM_001301836	113246		NM_138425	ENSG00000111678	C12orf57	C10|GRCC10	chromosome 12 open reading frame 57	protein-coding
148049	chr20	63235511	63236400	+	0	NA	promoter-TSS (NM_022161)	promoter-TSS (NM_022161)	50	NM_022161	79444		NM_022161	ENSG00000101197	BIRC7	KIAP|LIVIN|ML-IAP|MLIAP|RNF50	baculoviral IAP repeat containing 7	protein-coding
199296	chr6	111997001	111997600	+	0	NA	Intergenic	Intergenic	-56804	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
191560	chr6	11728201	11728730	+	0	NA	intron (NM_032744, intron 4 of 5)	L2b|LINE|L2	50338	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
185712	chr5	132023271	132023830	+	0	NA	Intergenic	L2a|LINE|L2	-11482	NM_001205250	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
51274	chr12	51172051	51173700	+	0	NA	5' UTR (NM_005653, exon 1 of 15)	5' UTR (NM_005653, exon 1 of 15)	260	NM_005653	7024		NM_005653	ENSG00000135457	TFCP2	LBP1C|LSF|LSF1D|SEF|TFCP2C	transcription factor CP2	protein-coding
161780	chr3	45005651	45006150	+	0	NA	intron (NR_023353, intron 4 of 6)	Charlie13b|DNA|hAT-Charlie	-20403	NM_003278	7123		NM_003278	ENSG00000163815	CLEC3B	MCDR4|TN|TNA	C-type lectin domain family 3 member B	protein-coding
184529	chr5	102278301	102278500	+	0	NA	intron (NM_180991, intron 2 of 12)	L1MD1|LINE|L1	17884	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
194009	chr6	31795101	31796630	+	0	NA	promoter-TSS (NM_006295).6	promoter-TSS (NM_006295).6	-113	NM_006295	7407		NM_006295	ENSG00000204394	VARS1	G7A|NDMSCA|VARS|VARS2	valyl-tRNA synthetase 1	protein-coding
107253	chr18	41954751	41955900	+	0	NA	promoter-TSS (NM_001308020)	promoter-TSS (NM_001308020)	91	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
136692	chr2	181127351	181127680	+	0	NA	intron (NR_130784, intron 1 of 4)	AluSp|SINE|Alu	3678	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
148192	chr20	63550971	63551500	+	0	NA	Intergenic	L1MD1|LINE|L1	-1785	NM_024059	79025		NM_024059	ENSG00000125531	FNDC11	C20orf195	fibronectin type III domain containing 11	protein-coding
69847	chr14	99251751	99252150	+	0	NA	intron (NM_001282237, intron 2 of 3)	MIRb|SINE|MIR	20247	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
191689	chr6	13583001	13583300	+	0	NA	intron (NR_164856, intron 2 of 10)	AluJb|SINE|Alu	8549	NM_001376804	23408		NM_012241	ENSG00000124523	SIRT5	SIR2L5	sirtuin 5	protein-coding
182349	chr5	59296801	59297200	+	0	NA	intron (NM_001364600, intron 3 of 7)	intron (NM_001364600, intron 3 of 7)	-20885	NM_001197220	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
200278	chr6	132749871	132750030	+	0	NA	intron (NR_110146, intron 2 of 3)	intron (NR_110146, intron 2 of 3)	7954	NM_004665	8875		NM_004665	ENSG00000112303	VNN2	FOAP-4|GPI-80	vanin 2	protein-coding
117728	chr19	29566771	29567330	+	0	NA	Intergenic	Intergenic	38150	NM_001384643	342865		NM_001146339	ENSG00000187135	VSTM2B	-	V-set and transmembrane domain containing 2B	protein-coding
23573	chr1	229481701	229482680	+	0	NA	intron (NM_018230, intron 12 of 25)	intron (NM_018230, intron 12 of 25)	26151	NM_018230	55746		NM_018230	ENSG00000069248	NUP133	GAMOS8|NPHS18|hNUP133	nucleoporin 133	protein-coding
39399	chr11	60756771	60756930	+	0	NA	promoter-TSS (NM_001098835)	promoter-TSS (NM_001098835)	-17	NM_001098835	219995		NM_152717	ENSG00000166961	MS4A15	-	membrane spanning 4-domains A15	protein-coding
227499	chr9	91207821	91208650	+	0	NA	Intergenic	Intergenic	89173	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
10046	chr1	58577421	58577950	+	0	NA	promoter-TSS (NM_002353)	promoter-TSS (NM_002353)	-433	NM_002353	4070		NM_002353	ENSG00000184292	TACSTD2	EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2	tumor associated calcium signal transducer 2	protein-coding
230751	chr9	128891471	128891630	+	0	NA	intron (NM_019594, intron 2 of 3)	AluJo|SINE|Alu	-9027	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
11748	chr1	92078071	92078230	+	0	NA	Intergenic	AluY|SINE|Alu	-2195	NM_001376131	284697		NM_015237	ENSG00000189195	BTBD8	KIAA1107	BTB domain containing 8	protein-coding
168710	chr3	150705201	150705700	+	0	NA	intron (NR_121674, intron 1 of 3)	intron (NR_121674, intron 1 of 3)	1475	NR_121674	101928085		NR_121674	ENSG00000240137	ERICH6-AS1	-	ERICH6 antisense RNA 1	ncRNA
201966	chr6	152174551	152174850	+	0	NA	intron (NM_033071, intron 129 of 145)	MIRb|SINE|MIR	-6413	NM_001347702	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
178233	chr4	143186701	143187180	+	0	NA	intron (NM_032557, intron 1 of 9)	intron (NM_032557, intron 1 of 9)	2023	NM_032557	84640		NM_032557	ENSG00000170185	USP38	HP43.8KD	ubiquitin specific peptidase 38	protein-coding
232935	chr9	136907821	136908280	+	0	NA	intron (NM_021138, intron 4 of 10)	CpG	21317	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
30807	chr10	84537351	84537880	+	0	NA	Intergenic	Intergenic	112446	NM_001284242	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
179923	chr5	755351	755650	+	0	NA	intron (NR_147096, intron 5 of 13)	intron (NR_147096, intron 5 of 13)	29229	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
88657	chr16	85650921	85651430	+	0	NA	intron (NM_001278184, intron 2 of 14)	intron (NM_001278184, intron 2 of 14)	37779	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
191717	chr6	13684501	13684900	+	0	NA	intron (NM_005493, intron 2 of 13)	L2c|LINE|L2	27135	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
50124	chr12	45206001	45206200	+	0	NA	intron (NR_037144, intron 1 of 2)	L2a|LINE|L2	9906	NR_037144	51054		NM_015899	ENSG00000293316	PLEKHA8P1	FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2	pleckstrin homology domain containing A8 pseudogene 1	pseudo
6311	chr1	27635271	27635580	+	0	NA	promoter-TSS (NM_005248)	promoter-TSS (NM_005248)	-240	NM_005248	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
165893	chr3	106215101	106215400	+	0	NA	Intergenic	Intergenic	-345849	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
138441	chr2	206084811	206086410	+	0	NA	intron (NM_017759, intron 1 of 10)	CpG	564	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
99738	chr17	50921601	50922330	+	0	NA	Intergenic	AluJb|SINE|Alu	-53987	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
119625	chr19	40789871	40790030	+	0	NA	intron (NR_037791, intron 7 of 11)	L2a|LINE|L2	-9241	NM_080732	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
45863	chr11	119666401	119666830	+	0	NA	intron (NM_002855, intron 5 of 5)	intron (NM_002855, intron 5 of 5)	62585	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
82259	chr16	15139021	15139280	+	0	NA	3' UTR (NM_001285449, exon 17 of 17)	3' UTR (NM_001285449, exon 17 of 17)	-2191	NR_123721	105369154		NR_123721	ENSG00000270580	PKD1P6-NPIPP1	-	PKD1P6-NPIPP1 readthrough	pseudo
168567	chr3	148974901	148975100	+	0	NA	Intergenic	Intergenic	-16408	NM_001184721	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
77671	chr15	85586001	85586530	+	0	NA	intron (NM_007200, intron 8 of 36)	AluSz6|SINE|Alu	-33685	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
157376	chr22	44712721	44713200	+	0	NA	intron (NM_181334, intron 1 of 14)	L2c|LINE|L2	10756	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
133809	chr2	127809951	127810050	+	0	NA	intron (NM_001006623, intron 1 of 7)	intron (NM_001006623, intron 1 of 7)	1171	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
203807	chr7	1293201	1293600	+	0	NA	Intergenic	Intergenic	60528	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
174115	chr4	36206021	36206480	+	0	NA	intron (NR_146894, intron 6 of 32)	intron (NR_146894, intron 6 of 32)	37689	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
83445	chr16	27316501	27316900	+	0	NA	intron (NM_001257997, intron 1 of 9)	MIR|SINE|MIR	2726	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
99569	chr17	50468001	50468200	+	0	NA	promoter-TSS (NR_110232)	promoter-TSS (NR_110232)	-229	NR_110232	80221		NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
59916	chr13	30865251	30865600	+	0	NA	Intergenic	Intergenic	-17137	NR_103813	440132		NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA
60231	chr13	40558801	40559000	+	0	NA	3' UTR (NM_002015, exon 3 of 3)	3' UTR (NM_002015, exon 3 of 3)	-77894	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
237702	chrX	124386171	124386680	+	0	NA	intron (NM_001163279, intron 28 of 31)	L2c|LINE|L2	39862	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
11302	chr1	89278901	89279930	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6555	NM_052942	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
225842	chr9	38061051	38061350	+	0	NA	intron (NM_003028, intron 1 of 5)	AluJb|SINE|Alu	8027	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
76337	chr15	74421401	74421600	+	0	NA	intron (NM_001146029, intron 1 of 12)	intron (NM_001146029, intron 1 of 12)	-10068	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
4390	chr1	20815601	20816300	+	0	NA	intron (NM_001198801, intron 32 of 34)	SVA_E|Retroposon|SVA	-28643	NM_001372052	50809		NM_016287	ENSG00000127483	HP1BP3	HP1-BP74|HP1BP74	heterochromatin protein 1 binding protein 3	protein-coding
15979	chr1	151925171	151925680	+	0	NA	Intergenic	Intergenic	-15914	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
11971	chr1	94091971	94092580	+	0	NA	intron (NM_000350, intron 6 of 49)	intron (NM_000350, intron 6 of 49)	28873	NM_000350	24		NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
198787	chr6	108900951	108901050	+	0	NA	intron (NM_001286609, intron 6 of 16)	intron (NM_001286609, intron 6 of 16)	23103	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
171932	chr4	872151	872800	+	0	NA	intron (NM_001318134, intron 15 of 24)	CpG	-46346	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
14946	chr1	147665471	147665630	+	0	NA	intron (NR_136635, intron 1 of 9)	L2b|LINE|L2	4974	NR_136634	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
85924	chr16	57095821	57096080	+	0	NA	intron (NM_152727, intron 1 of 15)	L2a|LINE|L2	3367	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
12724	chr1	109532071	109533730	+	0	NA	Intergenic	Intergenic	-6972	NM_031936	83873		NM_031936	ENSG00000156097	GPR61	BALGR|GPCR3	G protein-coupled receptor 61	protein-coding
110906	chr19	2760201	2761480	+	0	NA	intron (NM_003021, intron 8 of 11)	intron (NM_003021, intron 8 of 11)	-20764	NM_213568	29985		NM_144564	ENSG00000141873	SLC39A3	ZIP-3|ZIP3	solute carrier family 39 member 3	protein-coding
76139	chr15	72556351	72556650	+	0	NA	intron (NM_005744, intron 5 of 13)	LTR16B1|LTR|ERVL	-30717	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
82779	chr16	21447251	21447550	+	0	NA	intron (NR_027155, intron 28 of 28)	intron (NR_027155, intron 28 of 28)	-12945	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
138712	chr2	213133451	213133750	+	0	NA	intron (NM_001371277, intron 3 of 6)	AluSx1|SINE|Alu	16837	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
171505	chr3	196630851	196630950	+	0	NA	TTS (NR_132101)	TTS (NR_132101)	1687	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
218961	chr8	61126171	61126430	+	0	NA	Intergenic	Intergenic	-158552	NR_034003	100130298		NR_034003		LOC100130298	-	hCG1816373-like	ncRNA
4044	chr1	18958081	18958800	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-1764	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
126368	chr2	27442171	27443930	+	0	NA	TTS (NM_001321359)	TTS (NM_001321359)	669	NM_001321325	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
56362	chr12	113109721	113110450	+	0	NA	intron (NM_001193520, intron 14 of 21)	intron (NM_001193520, intron 14 of 21)	25514	NM_001301202	8437		NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
166690	chr3	120451101	120451300	+	0	NA	promoter-TSS (NM_007085)	promoter-TSS (NM_007085)	-208	NM_007085	11167		NM_007085	ENSG00000163430	FSTL1	FRP|FSL1|MIR198|OCC-1|OCC1|tsc36	follistatin like 1	protein-coding
97433	chr17	43541171	43541330	+	0	NA	intron (NM_001322219, intron 23 of 23)	intron (NM_001322219, intron 23 of 23)	4649	NM_001986	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
190280	chr5	179554071	179554430	+	0	NA	intron (NM_025158, intron 1 of 17)	intron (NM_025158, intron 1 of 17)	3696	NM_025158	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
120187	chr19	42272571	42273330	+	0	NA	exon (NM_001304815, exon 2 of 21)	exon (NM_001304815, exon 2 of 21)	3698	NM_001379482	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
80905	chr16	3731921	3732200	+	0	NA	intron (NM_004380, intron 28 of 30)	intron (NM_004380, intron 28 of 30)	-14536	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
55498	chr12	104764571	104765130	+	0	NA	Intergenic	MIR3|SINE|MIR	173217	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
197052	chr6	53483571	53484100	+	0	NA	Intergenic	Intergenic	61266	NM_001197115	2729		NM_001498	ENSG00000001084	GCLC	GCL|GCS|GLCL|GLCLC	glutamate-cysteine ligase catalytic subunit	protein-coding
96236	chr17	39800301	39801050	+	0	NA	intron (NM_001257408, intron 2 of 6)	intron (NM_001257408, intron 2 of 6)	-22450	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
110656	chr19	2246051	2246630	+	0	NA	intron (NM_007165, intron 5 of 8)	intron (NM_007165, intron 5 of 8)	-2983	NM_000479	268		NM_000479	ENSG00000104899	AMH	MIF|MIS	anti-Mullerian hormone	protein-coding
210150	chr7	98242621	98243280	+	0	NA	intron (NM_015395, intron 6 of 25)	(CACC)n|Simple_repeat|Simple_repeat	9282	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
203034	chr6	163984521	163984980	+	0	NA	Intergenic	Intergenic	-313266	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
228664	chr9	107288351	107288450	+	0	NA	intron (NM_001244713, intron 1 of 9)	L2a|LINE|L2	3631	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
131782	chr2	98488871	98489030	+	0	NA	intron (NM_001351429, intron 1 of 23)	(TG)n|Simple_repeat|Simple_repeat	42940	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
196799	chr6	45895601	45895880	+	0	NA	Intergenic	Intergenic	41857	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
65953	chr14	55806751	55808050	+	0	NA	Intergenic	Intergenic	-10726	NR_026796	645687		NR_026796	ENSG00000258791	LINC00520	C14orf34|LASSIE|LEENE|LncRNA00520	long intergenic non-protein coding RNA 520	ncRNA
55105	chr12	98505671	98505830	+	0	NA	Intergenic	Intergenic	-1895	NR_038383	643770		NR_038383	ENSG00000245017	LINC02453	-	long intergenic non-protein coding RNA 2453	ncRNA
105671	chr18	2634621	2634880	+	0	NA	Intergenic	Intergenic	20645	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
232502	chr9	136265001	136265200	+	0	NA	intron (NM_001378188, intron 17 of 25)	intron (NM_001378188, intron 17 of 25)	-19288	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
203301	chr6	170052751	170052850	+	0	NA	Intergenic	(CTCT)n|Simple_repeat|Simple_repeat	90177	NR_027434	100131532		NR_027434		LOC100131532	-	uncharacterized LOC100131532	ncRNA
92540	chr17	8946171	8946930	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	19157	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
111553	chr19	4043821	4044500	+	0	NA	3' UTR (NM_001317990, exon 3 of 3)	3' UTR (NM_001317990, exon 3 of 3)	21369	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
28873	chr10	62726251	62726350	+	0	NA	Intergenic	Intergenic	-78420	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
39197	chr11	57480121	57481350	+	0	NA	Intergenic	Intergenic	20207	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
157043	chr22	42573471	42574150	+	0	NA	non-coding (NR_002184, exon 7 of 7)	non-coding (NR_002184, exon 7 of 7)	8201	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
88912	chr16	87814151	87814580	+	0	NA	Intergenic	AluSq|SINE|Alu	20295	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
32345	chr10	102271901	102272100	+	0	NA	intron (NR_165087, intron 3 of 38)	AluJb|SINE|Alu	26468	NR_165088	8729		NM_004193	ENSG00000107862	GBF1	ARF1GEF|CMT2GG|CMTDI2|CMTDIA	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
51754	chr12	53270051	53270500	+	0	NA	intron (NM_012291, intron 3 of 30)	intron (NM_012291, intron 3 of 30)	1976	NM_012291	9700		NM_012291	ENSG00000135476	ESPL1	ESP1|SEPA	extra spindle pole bodies like 1, separase	protein-coding
314	chr1	975751	976500	+	0	NA	TTS (NM_032129)	TTS (NM_032129)	5048	NM_001369898	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
103237	chr17	77502101	77503230	+	0	NA	Intergenic	Intergenic	-24336	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
233239	chr9	137253571	137253930	+	0	NA	promoter-TSS (NR_038389)	promoter-TSS (NR_038389)	-253	NR_038389	100129722		NR_038389	ENSG00000275549	STPG3-AS1	C9orf173-AS1	STPG3 antisense RNA 1	ncRNA
169594	chr3	170913421	170913680	+	0	NA	Intergenic	AluY|SINE|Alu	-4913	NM_020390	56648		NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
77869	chr15	88906021	88906280	+	0	NA	intron (NM_001114614, intron 4 of 6)	MER91B|DNA|hAT-Tip100	7018	NM_001310321	4240		NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule EGF and factor V/VIII domain containing	protein-coding
190001	chr5	177471301	177472190	+	0	NA	intron (NM_004395, intron 1 of 13)	intron (NM_004395, intron 1 of 13)	1125	NM_080881	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
160217	chr3	23940351	23940650	+	0	NA	intron (NM_001377380, intron 1 of 4)	Charlie5|DNA|hAT-Charlie	-4786	NM_005126	9975		NM_005126	ENSG00000174738	NR1D2	BD73|EAR-1R|REVERBB|REVERBbeta|RVR	nuclear receptor subfamily 1 group D member 2	protein-coding
190334	chr5	179630651	179631000	+	0	NA	intron (NM_001364226, intron 1 of 13)	AluY|SINE|Alu	3959	NM_001364233	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
104757	chr17	81692071	81692650	+	0	NA	intron (NM_004712, intron 8 of 21)	intron (NM_004712, intron 8 of 21)	-1397	NR_106844	102465471		NR_106844	ENSG00000277784	MIR6786	hsa-mir-6786	microRNA 6786	ncRNA
26232	chr10	14591621	14592080	+	0	NA	intron (NM_001282695, intron 2 of 5)	L1MC5a|LINE|L1	12551	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
234759	chrX	23741971	23742600	+	0	NA	intron (NM_001033583, intron 1 of 14)	intron (NM_001033583, intron 1 of 14)	991	NM_001330259	23597		NM_012332	ENSG00000123130	ACOT9	ACATE2|CGI-16|MT-ACT48|MTACT48	acyl-CoA thioesterase 9	protein-coding
201612	chr6	149381821	149382080	+	0	NA	intron (NM_001369506, intron 4 of 7)	L2|LINE|L2	-18312	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
212984	chr7	130984371	130984730	+	0	NA	intron (NR_109855, intron 2 of 4)	intron (NR_109855, intron 2 of 4)	71086	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
75545	chr15	66774301	66774550	+	0	NA	intron (NR_027654, intron 4 of 4)	intron (NR_027654, intron 4 of 4)	72189	NR_027654	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
84005	chr16	29456021	29457200	+	0	NA	intron (NM_001014999, intron 3 of 5).2	AluSz|SINE|Alu	1519	NR_037609	100526831		NR_037609	ENSG00000260280	SLX1B-SULT1A4	-	SLX1B-SULT1A4 readthrough (NMD candidate)	ncRNA
218855	chr8	60238651	60238750	+	0	NA	intron (NR_135821, intron 3 of 9)	intron (NR_135821, intron 3 of 9)	42700	NM_001321837	767		NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
185441	chr5	131249901	131250280	+	0	NA	Intergenic	L1ME3F|LINE|L1	-13963	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
114348	chr19	12202321	12202600	+	0	NA	intron (NR_104179, intron 1 of 1)	LTR53-int|LTR|ERVL	7445	NR_104179	100289333		NR_104179		LOC100289333	-	uncharacterized LOC100289333	pseudo
26454	chr10	17502751	17503050	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-48305	NM_001004470	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
27598	chr10	32558971	32559280	+	0	NA	intron (NR_109826, intron 13 of 16)	L1PA3|LINE|L1	112985	NR_109827	79741		NM_024688	ENSG00000216937	CCDC7	BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68	coiled-coil domain containing 7	protein-coding
112528	chr19	6515871	6516500	+	0	NA	Intergenic	Intergenic	-13337	NM_001289123	10382		NM_006087	ENSG00000104833	TUBB4A	DYT4|TUBB4|beta-5	tubulin beta 4A class IVa	protein-coding
166946	chr3	125202221	125202480	+	0	NA	intron (NM_024628, intron 2 of 13)	intron (NM_024628, intron 2 of 13)	9049	NM_001195483	84561		NM_024628	ENSG00000221955	SLC12A8	CCC9	solute carrier family 12 member 8	protein-coding
35293	chr11	976651	977350	+	0	NA	intron (NR_144509, intron 4 of 20)	CpG	51130	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
41673	chr11	66611401	66611600	+	0	NA	Intergenic	AluSz|SINE|Alu	-5082	NM_001198845	100526737		NM_001198845	ENSG00000248643	RBM14-RBM4	COAZ|PSP2|RBM14|SIP	RBM14-RBM4 readthrough	protein-coding
180521	chr5	14416951	14417650	+	0	NA	intron (NR_134469, intron 33 of 56)	intron (NR_134469, intron 33 of 56)	-46683	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
228763	chr9	110248471	110248630	+	0	NA	intron (NM_001244938, intron 2 of 3)	Tigger3b|DNA|TcMar-Tigger	7957	NM_003329	7295		NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1|TXN1|Trx80	thioredoxin	protein-coding
21140	chr1	203664921	203665580	+	0	NA	intron (NM_001365784, intron 1 of 20)	MER91A|DNA|hAT-Tip100	37313	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
208682	chr7	73230671	73231030	+	0	NA	intron (NR_003186, intron 4 of 7)	AluSx|SINE|Alu	10211	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
222681	chr8	141244571	141246100	+	0	NA	intron (NM_001286646, intron 2 of 8)	intron (NM_001286646, intron 2 of 8)	-9232	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
53340	chr12	64636751	64637050	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-14295	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
57666	chr12	122750771	122751230	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-1824	NM_003677	8562		NM_003677	ENSG00000139726	DENR	DRP|DRP1|SMAP-3	density regulated re-initiation and release factor	protein-coding
94424	chr17	29131301	29131500	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	8989	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
81867	chr16	11663101	11663750	+	0	NA	Intergenic	Intergenic	-5030	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
161852	chr3	45747151	45747450	+	0	NA	Intergenic	MER52A|LTR|ERV1	49236	NM_001385683	54716		NM_020208	ENSG00000163817	SLC6A20	IMINO|SIT1|XT3|Xtrp3	solute carrier family 6 member 20	protein-coding
12212	chr1	100398751	100399050	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	46394	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
36377	chr11	3969321	3970230	+	0	NA	intron (NM_001382568, intron 2 of 11)	intron (NM_001382568, intron 2 of 11)	113713	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
66015	chr14	58261171	58261900	+	0	NA	intron (NR_038123, intron 5 of 9)	intron (NR_038123, intron 5 of 9)	16692	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
213497	chr7	139056651	139056750	+	0	NA	intron (NM_020119, intron 9 of 12)	AluJb|SINE|Alu	-12543	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
157349	chr22	44679251	44679350	+	0	NA	intron (NM_001017530, intron 1 of 7)	intron (NM_001017530, intron 1 of 7)	2215	NM_001198721	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
150721	chr21	43738101	43738400	+	0	NA	intron (NM_003681, intron 2 of 10)	MLT1B|LTR|ERVL-MaLR	-3236	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
37631	chr11	20386621	20388580	+	0	NA	promoter-TSS (NM_005788)	promoter-TSS (NM_005788)	70	NM_001145167	10196		NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
127085	chr2	37587251	37587350	+	0	NA	Intergenic	Intergenic	84342	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
135175	chr2	157891371	157891930	+	0	NA	Intergenic	Intergenic	-15320	NM_001111067	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
47942	chr12	6831101	6831500	+	0	NA	exon (NM_014262, exon 5 of 15)	exon (NM_014262, exon 5 of 15)	2893	NM_014262	10536		NM_014262	ENSG00000110811	P3H3	GRCB|HSU47926|LEPREL2	prolyl 3-hydroxylase 3	protein-coding
140720	chr2	234425521	234427400	+	0	NA	Intergenic	Intergenic	28135	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
72194	chr15	30100951	30102000	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2072	NR_026858	89838		NR_026858	ENSG00000291023	ULK4P1	D-X|FAM7A1	ULK4 pseudogene 1	pseudo
99820	chr17	54961251	54961350	+	0	NA	TTS (NM_001162862)	TTS (NM_001162862)	7354	NR_027942	1353		NM_004375	ENSG00000166260	COX11	COX11P|MC4DN23	cytochrome c oxidase copper chaperone COX11	protein-coding
171164	chr3	195633821	195634200	+	0	NA	Intergenic	Intergenic	18149	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
126396	chr2	27585071	27585430	+	0	NA	intron (NM_001271286, intron 2 of 12)	L2c|LINE|L2	2208	NM_032434	84450		NM_032434	ENSG00000243943	ZNF512	-	zinc finger protein 512	protein-coding
172111	chr4	1135871	1136230	+	0	NA	Intergenic	Intergenic	-12886	NR_033768	100379220		NR_033768	ENSG00000293496	TMED11P	p24a1|p24alpha1	transmembrane p24 trafficking protein 11, pseudogene	pseudo
8665	chr1	41890951	41892250	+	0	NA	intron (NR_038260, intron 1 of 2)	L2c|LINE|L2	27322	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
123425	chr19	54102321	54103850	+	0	NA	promoter-TSS (NM_133168).2	promoter-TSS (NM_133168).2	230	NM_004542	4696		NM_004542	ENSG00000170906	NDUFA3	B9|CI-B9	NADH:ubiquinone oxidoreductase subunit A3	protein-coding
25853	chr10	11235851	11236700	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	71245	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
182376	chr5	60944721	60946280	+	0	NA	promoter-TSS (NM_001007234)	promoter-TSS (NM_001007234)	295	NM_174889	91942		NM_174889	ENSG00000164182	NDUFAF2	B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin	NADH:ubiquinone oxidoreductase complex assembly factor 2	protein-coding
115747	chr19	16315851	16316230	+	0	NA	Intergenic	AluJo|SINE|Alu	-8786	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
105358	chr17	82642821	82643080	+	0	NA	intron (NM_019613, intron 2 of 9)	Charlie15b|DNA|hAT-Charlie	5494	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
68973	chr14	91449551	91449850	+	0	NA	Intergenic	AluSz6|SINE|Alu	-31880	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
144432	chr20	35451451	35451750	+	0	NA	intron (NM_001319138, intron 1 of 3)	AluJb|SINE|Alu	2497	NR_031620	100302125		NR_031620	ENSG00000221763	MIR1289-1	MIRN1289-1|hsa-mir-1289-1	microRNA 1289-1	ncRNA
213836	chr7	141701901	141702900	+	0	NA	promoter-TSS (NM_001080392).2	promoter-TSS (NM_001080392).2	-234	NM_001080392	57189		NM_001080392	ENSG00000257093	DENND11	KIAA1147|LCHN|PRO2561	DENN domain containing 11	protein-coding
109720	chr19	1078221	1078950	+	0	NA	intron (NM_012292, intron 11 of 22)	AluSg7|SINE|Alu	1951	NM_001282334	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
106523	chr18	21099571	21100080	+	0	NA	intron (NM_005406, intron 1 of 32)	AluSz|SINE|Alu	11988	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
234931	chrX	37905771	37905950	+	0	NA	Intergenic	CpG	-58289	NM_006520	6990		NM_006520	ENSG00000165169	DYNLT3	RP3|TCTE1L|TCTEX1L	dynein light chain Tctex-type 3	protein-coding
95164	chr17	35141601	35143050	+	0	NA	promoter-TSS (NM_018096)	promoter-TSS (NM_018096)	-22	NM_018096	54475		NM_018096	ENSG00000073536	NLE1	NLE|Rsa4	notchless homolog 1	protein-coding
160030	chr3	18424501	18426250	+	0	NA	promoter-TSS (NM_002971)	promoter-TSS (NM_002971)	-36	NM_001195470	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
13681	chr1	116596001	116596600	+	0	NA	intron (NM_001007237, intron 7 of 10)	intron (NM_001007237, intron 7 of 10)	-25207	NM_001144822	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
61770	chr13	74550051	74550450	+	0	NA	Intergenic	L1MA5|LINE|L1	-2593	NR_034024	338864		NR_034024	ENSG00000236678	LINC00347	-	long intergenic non-protein coding RNA 347	ncRNA
213511	chr7	139067901	139068100	+	0	NA	intron (NM_020119, intron 7 of 12)	MER34|LTR|ERV1	-23843	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
136918	chr2	189702071	189702230	+	0	NA	intron (NM_001378068, intron 7 of 22)	L1MCa|LINE|L1	26165	NM_144708	150709		NM_144708	ENSG00000151687	ANKAR	-	ankyrin and armadillo repeat containing	protein-coding
103010	chr17	76867951	76868750	+	0	NA	promoter-TSS (NM_001199172)	promoter-TSS (NM_001199172)	-54	NM_001199172	146664		NM_144677	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B	protein-coding
148076	chr20	63291001	63291630	+	0	NA	Intergenic	Intergenic	-1871	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
36668	chr11	8168351	8169230	+	0	NA	intron (NR_144485, intron 1 of 9)	CpG	235	NM_001206672	79608		NM_024557	ENSG00000166405	RIC3	AYST720|PRO1385|RIC-3	RIC3 acetylcholine receptor chaperone	protein-coding
20387	chr1	198162071	198162780	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	5427	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
121539	chr19	47239121	47240180	+	0	NA	Intergenic	CpG	-6983	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
39029	chr11	47760301	47760600	+	0	NA	intron (NM_015308, intron 2 of 16)	AluSx|SINE|Alu	6891	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
236070	chrX	56587051	56587230	+	0	NA	Intergenic	L1PA3|LINE|L1	23513	NM_013444	29978		NM_013444	ENSG00000188021	UBQLN2	ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2	ubiquilin 2	protein-coding
7833	chr1	36313771	36314850	+	0	NA	intron (NM_024676, intron 7 of 12)	L1M4|LINE|L1	7203	NM_024676	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
203978	chr7	1664371	1665030	+	0	NA	Intergenic	CpG	-23419	NM_001128636	392617		NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
131426	chr2	96288171	96288850	+	0	NA	intron (NM_014014, intron 24 of 44)	intron (NM_014014, intron 24 of 44)	17036	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
95690	chr17	38423521	38424200	+	0	NA	Intergenic	Intergenic	-4604	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
67378	chr14	69770551	69770980	+	0	NA	intron (NM_001039465, intron 6 of 7)	MER20|DNA|hAT-Charlie	-3052	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
41900	chr11	67265951	67268690	+	0	NA	intron (NM_001619, intron 1 of 20)	intron (NM_001619, intron 1 of 20)	847	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
15473	chr1	150359051	150359150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5011	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
15325	chr1	149889671	149889830	+	0	NA	Intergenic	Intergenic	-1785	NM_175065	317772		NM_175065	ENSG00000184270	H2AC21	H2AB|HIST2H2AB	H2A clustered histone 21	protein-coding
7436	chr1	32980101	32980300	+	0	NA	Intergenic	Intergenic	-15391	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
22077	chr1	211378701	211379450	+	0	NA	Intergenic	L2a|LINE|L2	-3680	NR_026761	84791		NM_032705	ENSG00000153363	LINC00467	ASAP|C1orf97	long intergenic non-protein coding RNA 467	ncRNA
47812	chr12	6585021	6585280	+	0	NA	intron (NM_001273, intron 25 of 39)	intron (NM_001273, intron 25 of 39)	-3541	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
100985	chr17	64602421	64602750	+	0	NA	intron (NM_022739, intron 2 of 18)	intron (NM_022739, intron 2 of 18)	59722	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
116270	chr19	17688071	17689300	+	0	NA	promoter-TSS (NM_001080421)	promoter-TSS (NM_001080421)	-486	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
48703	chr12	10612871	10614480	+	0	NA	promoter-TSS (NM_001300739)	promoter-TSS (NM_001300739)	-66	NM_018048	55110		NM_018048	ENSG00000111196	MAGOHB	MGN2|mago|magoh	mago homolog B, exon junction complex subunit	protein-coding
110802	chr19	2460671	2460830	+	0	NA	intron (NR_134931, intron 1 of 1)	AluSz|SINE|Alu	1435	NR_134931	101928602		NR_134931	ENSG00000267201	LINC01775	-	long intergenic non-protein coding RNA 1775	ncRNA
117965	chr19	33299401	33300000	+	0	NA	TTS (NM_004364)	TTS (NM_004364)	2834	NM_004364	1050		NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	CCAAT enhancer binding protein alpha	protein-coding
61110	chr13	48487871	48488030	+	0	NA	Intergenic	L1MC1|LINE|L1	-43281	NM_005767	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
95665	chr17	38286351	38286850	+	0	NA	Intergenic	Intergenic	-10423	NM_001278279	84311		NM_032351	ENSG00000278845	MRPL45	L45mt|MRP-L45|Mba1|mL45	mitochondrial ribosomal protein L45	protein-coding
8750	chr1	42705671	42706030	+	0	NA	Intergenic	AluSx1|SINE|Alu	22714	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
174101	chr4	36159351	36159450	+	0	NA	exon (NM_015230, exon 14 of 33)	exon (NM_015230, exon 14 of 33)	84539	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
45726	chr11	119104501	119104700	+	0	NA	Intergenic	Intergenic	-2150	NM_001382613	9854		NM_014807	ENSG00000172375	C2CD2L	DLNB23|TMEM24	C2CD2 like	protein-coding
233494	chr9	138128971	138130030	+	0	NA	Intergenic	Intergenic	-20613	NR_027156	643224		NR_027156		TUBBP5	-	tubulin beta pseudogene 5	pseudo
198869	chr6	109445951	109446330	+	0	NA	exon (NM_001159291, exon 18 of 24)	exon (NM_001159291, exon 18 of 24)	-4969	NM_001111298	285755		NM_173672	ENSG00000185250	PPIL6	PPIase|RSPH12|bA425D10.6|dJ919F19.1	peptidylprolyl isomerase like 6	protein-coding
177663	chr4	121462701	121462980	+	0	NA	Intergenic	Intergenic	-81822	NM_198179	84109		NM_198179	ENSG00000186867	QRFPR	AQ27|GPR103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
135643	chr2	168248751	168248850	+	0	NA	Intergenic	Intergenic	-1205	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
93096	chr17	17665501	17665700	+	0	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	12088	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
142676	chr20	6008421	6008680	+	0	NA	intron (NM_001323561, intron 1 of 6)	intron (NM_001323561, intron 1 of 6)	1301	NM_001127458	54675		NM_019095	ENSG00000088766	CRLS1	C20orf155|CLS|CLS1|COSPD57|GCD10|dJ967N21.6	cardiolipin synthase 1	protein-coding
81207	chr16	4500401	4500800	+	0	NA	intron (NM_001286267, intron 2 of 6)	intron (NM_001286267, intron 2 of 6)	4742	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
104328	chr17	80960401	80960930	+	0	NA	intron (NM_020761, intron 30 of 33)	intron (NM_020761, intron 30 of 33)	10548	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
166842	chr3	123064921	123065180	+	0	NA	Intergenic	L2a|LINE|L2	-1975	NR_028444	10954		NM_006810	ENSG00000065485	PDIA5	PDIR	protein disulfide isomerase family A member 5	protein-coding
846	chr1	1602451	1603430	+	0	NA	intron (NR_147951, intron 2 of 2)	intron (NR_147951, intron 2 of 2)	-2805	NM_001242659	643988		NM_001242659	ENSG00000228594	FNDC10	C1orf233	fibronectin type III domain containing 10	protein-coding
113333	chr19	8608451	8608950	+	0	NA	intron (NM_030957, intron 1 of 25)	intron (NM_030957, intron 1 of 25)	2015	NM_030957	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
72660	chr15	38530221	38530630	+	0	NA	intron (NM_001128602, intron 2 of 15)	MLT1H|LTR|ERVL-MaLR	34389	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
50752	chr12	49014601	49015000	+	0	NA	intron (NM_001206709, intron 1 of 11)	intron (NM_001206709, intron 1 of 11)	3976	NM_001206710	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
123053	chr19	51329251	51329350	+	0	NA	3' UTR (NM_001101372, exon 8 of 8)	3' UTR (NM_001101372, exon 8 of 8)	12824	NM_001163922	147645		NM_001163922	ENSG00000186806	VSIG10L	-	V-set and immunoglobulin domain containing 10 like	protein-coding
35744	chr11	2133901	2134550	+	0	NA	promoter-TSS (NR_030158)	promoter-TSS (NR_030158)	-16	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
176419	chr4	89255671	89255830	+	0	NA	intron (NM_198281, intron 1 of 1)	MER31B|LTR|ERV1	52050	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
121300	chr19	46731901	46732100	+	0	NA	intron (NM_001039877, intron 5 of 17)	L2a|LINE|L2	-14057	NM_024301	79147		NM_024301	ENSG00000181027	FKRP	FKTR|LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
173477	chr4	9072571	9073130	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-100323	NM_001358418	100287045		NM_001358418	ENSG00000229924	FAM90A26	FAM90A26P	family with sequence similarity 90 member A26	protein-coding
150677	chr21	43565271	43565430	+	0	NA	exon (NM_017445, exon 1 of 1).2	exon (NM_017445, exon 1 of 1).2	168	NM_017445	54145		NM_017445	ENSG00000234289	H2BC12L	H2B/s|H2BFS|H2BS1	H2B clustered histone 12 like	protein-coding
149985	chr21	36709171	36709730	+	0	NA	intron (NM_005069, intron 2 of 10)	CpG-18383	10335	NM_009586	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
5296	chr1	25194121	25194580	+	0	NA	Intergenic	Intergenic	38152	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
193756	chr6	31332751	31333650	+	0	NA	Intergenic	HERVIP10B3-int|LTR|ERV1	22116	NR_106951	102465537		NR_106951	ENSG00000277402	MIR6891	hsa-mir-6891	microRNA 6891	ncRNA
72695	chr15	38566521	38567030	+	0	NA	Intergenic	Intergenic	-1961	NM_005739	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
226893	chr9	78294771	78294930	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-2275	NM_021154	29968		NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding
135744	chr2	169559951	169560450	+	0	NA	intron (NM_001322048, intron 4 of 13)	intron (NM_001322048, intron 4 of 13)	13665	NM_024622	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
177764	chr4	122689701	122690100	+	0	NA	TTS (NR_104126)	TTS (NR_104126)	42558	NR_024041	729338		NR_024041		CETN4P	-	centrin 4, pseudogene	pseudo
117851	chr19	32223571	32223950	+	0	NA	Intergenic	Intergenic	-117844	NR_110694	101927411		NR_110694	ENSG00000267204	LINC01782	-	long intergenic non-protein coding RNA 1782	ncRNA
127804	chr2	44360921	44363150	+	0	NA	promoter-TSS (NM_001171617)	promoter-TSS (NM_001171617)	88	NM_024766	79823		NM_024766	ENSG00000143919	CAMKMT	C2orf34|CLNMT|CaM KMT|Cam|KMT	calmodulin-lysine N-methyltransferase	protein-coding
102548	chr17	75839721	75840650	+	0	NA	intron (NM_199242, intron 10 of 31)	intron (NM_199242, intron 10 of 31)	4219	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
224637	chr9	20611751	20612130	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	9998	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
230828	chr9	129066851	129067300	+	0	NA	intron (NR_138423, intron 12 of 16)	AluYh3|SINE|Alu	-14036	NM_020438	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
194236	chr6	32437371	32438150	+	0	NA	Intergenic	Intergenic	-2127	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
67667	chr14	73118121	73118380	+	0	NA	intron (NM_021239, intron 18 of 18)	AluJb|SINE|Alu	-18257	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
23092	chr1	226661351	226661880	+	0	NA	intron (NR_103784, intron 1 of 1)	MIRb|SINE|MIR	13453	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
192160	chr6	17585721	17586580	+	0	NA	Intergenic	Intergenic	-14152	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
77209	chr15	80987871	80988030	+	0	NA	intron (NR_126327, intron 1 of 4)	AluJr|SINE|Alu	1869	NR_126327	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
3399	chr1	15740671	15740830	+	0	NA	3' UTR (NM_207348, exon 5 of 5)	3' UTR (NM_207348, exon 5 of 5)	-1749	NM_001013641	388595		NM_001013641	ENSG00000162460	TMEM82	-	transmembrane protein 82	protein-coding
164086	chr3	56467851	56467950	+	0	NA	intron (NM_015576, intron 1 of 16)	CpG	567	NR_132749	26059		NM_015576	ENSG00000187672	ERC2	CAST|CAST1|ELKSL|SPBC110|Spc110	ELKS/RAB6-interacting/CAST family member 2	protein-coding
122267	chr19	49057661	49058280	+	0	NA	promoter-TSS (NM_001385261)	promoter-TSS (NM_001385261)	-221	NM_001385261	94027		NM_033142	ENSG00000196337	CGB7	CG-beta-a|CGB6	chorionic gonadotropin subunit beta 7	protein-coding
138559	chr2	207629501	207629700	+	0	NA	Intergenic	Intergenic	-3547	NM_001330133	151194		NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase 21A, HSPA lysine	protein-coding
123359	chr19	53885871	53886630	+	0	NA	intron (NM_001316329, intron 3 of 18)	AluSx|SINE|Alu	4053	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
43489	chr11	78415171	78415330	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	2570	NM_080491	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
161606	chr3	43194451	43195680	+	0	NA	Intergenic	Intergenic	-88986	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
33417	chr10	118698321	118699150	+	0	NA	intron (NM_153810, intron 5 of 8)	MLT1G1|LTR|ERVL-MaLR	56235	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
208557	chr7	71680201	71680400	+	0	NA	intron (NM_022479, intron 9 of 10)	(TCCC)n|Simple_repeat|Simple_repeat	-372530	NR_037477	100500836		NR_037477	ENSG00000265878	MIR3914-1	-	microRNA 3914-1	ncRNA
160503	chr3	30629151	30629930	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	22939	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
73227	chr15	41660001	41661300	+	0	NA	intron (NM_001164273, intron 1 of 23)	CpG	238	NM_001080541	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
63023	chr13	112768021	112768350	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	-13454	NR_046661	100874205		NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA
113039	chr19	7971851	7972350	+	0	NA	intron (NM_001419, intron 4 of 5)	intron (NM_001419, intron 4 of 5)	-28434	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
221011	chr8	116231371	116231630	+	0	NA	intron (NR_046215, intron 4 of 13)	intron (NR_046215, intron 4 of 13)	93559	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
97106	chr17	42485971	42486130	+	0	NA	intron (NM_001378547, intron 9 of 19)	intron (NM_001378547, intron 9 of 19)	-8723	NR_049845	100847030		NR_049845	ENSG00000264314	MIR548AT	-	microRNA 548at	ncRNA
69652	chr14	97969771	97969930	+	0	NA	intron (NR_152748, intron 1 of 2)	intron (NR_152748, intron 1 of 2)	8274	NR_015430	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
4878	chr1	23780751	23780850	+	0	NA	intron (NM_020362, intron 3 of 5)	AluSx|SINE|Alu	2382	NM_020362	57095		NM_020362	ENSG00000057757	PITHD1	C1orf128|HT014|TXNL1CL	PITH domain containing 1	protein-coding
68600	chr14	89587921	89588180	+	0	NA	intron (NM_001085471, intron 1 of 6)	MSTA|LTR|ERVL-MaLR	11834	NR_024620	29018		NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
124563	chr2	579651	579750	+	0	NA	Intergenic	Intergenic	21499	NR_136169	105373352		NR_136168	ENSG00000233633	LOC105373352	-	uncharacterized LOC105373352	ncRNA
225979	chr9	41233171	41233330	+	0	NA	promoter-TSS (NR_039688).2	promoter-TSS (NR_039688).2	-505	NR_039688	100616184		NR_039688	ENSG00000276029	MIR4477A	-	microRNA 4477a	ncRNA
161956	chr3	46237401	46237600	+	0	NA	Intergenic	L1MA4A|LINE|L1	-4881	NM_178328	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
87583	chr16	73047871	73048430	+	0	NA	promoter-TSS (NM_006885)	promoter-TSS (NM_006885)	-22	NM_006885	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
228081	chr9	96401771	96401930	+	0	NA	intron (NM_153695, intron 1 of 4)	AluJo|SINE|Alu	16520	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
144997	chr20	37521251	37521750	+	0	NA	promoter-TSS (NM_001317074)	promoter-TSS (NM_001317074)	250	NM_181689	4826		NM_005386	ENSG00000053438	NNAT	Peg5	neuronatin	protein-coding
202082	chr6	154258071	154258430	+	0	NA	intron (NM_001130700, intron 3 of 11)	MIR|SINE|MIR	71831	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
86829	chr16	67886301	67887030	+	0	NA	TTS (NM_198443)	TTS (NM_198443)	1780	NM_198443	123904		NM_198443	ENSG00000188038	NRN1L	MRCC2446|UNQ2446|cpg15-2	neuritin 1 like	protein-coding
40897	chr11	65133151	65133590	+	0	NA	intron (NM_172230, intron 2 of 15)	intron (NM_172230, intron 2 of 15)	1149	NM_172230	84447		NM_032431	ENSG00000162298	SYVN1	DER3|HRD1	synoviolin 1	protein-coding
70596	chr14	102779571	102779730	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	2171	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
16874	chr1	155832421	155832880	+	0	NA	intron (NM_001282861, intron 2 of 20)	AluSg7|SINE|Alu	24564	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
75442	chr15	65812551	65813450	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-20707	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
707	chr1	1422821	1423080	+	0	NA	Intergenic	MER41B|LTR|ERV1	-1506	NM_001145210	441869		NM_001145210	ENSG00000235098	ANKRD65	-	ankyrin repeat domain 65	protein-coding
178306	chr4	145180301	145181280	+	0	NA	promoter-TSS (NM_001366058)	promoter-TSS (NM_001366058)	-201	NM_001366058	54726		NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
213932	chr7	142626471	142626980	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-39574	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
92031	chr17	7481301	7481500	+	0	NA	promoter-TSS (NM_001102614)	promoter-TSS (NM_001102614)	-2	NM_001102614	643664		NM_001102614	ENSG00000259224	SLC35G6	AMAC1L3|TMEM21B	solute carrier family 35 member G6	protein-coding
235729	chrX	48921351	48921450	+	0	NA	TTS (NM_017602)	TTS (NM_017602)	-2376	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
49309	chr12	21500901	21502480	+	0	NA	promoter-TSS (NM_002907)	promoter-TSS (NM_002907)	-21	NM_032941	5965		NM_002907	ENSG00000004700	RECQL	RECON|RECQL1|RecQ1	RecQ like helicase	protein-coding
105727	chr18	2719301	2719780	+	0	NA	intron (NM_015295, intron 19 of 47)	AluSx1|SINE|Alu	63814	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
26045	chr10	12447151	12447650	+	0	NA	intron (NM_001351032, intron 3 of 11)	intron (NM_001351032, intron 3 of 11)	58418	NM_001351032	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
82119	chr16	14702801	14703930	+	0	NA	Intergenic	CpG	-8324	NM_001277324	642799		NM_001277324	ENSG00000254852	NPIPA2	NPIP|NPIPA1	nuclear pore complex interacting protein family member A2	protein-coding
27102	chr10	27513551	27513980	+	0	NA	intron (NR_046172, intron 2 of 5)	L1M7|LINE|L1	9461	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
234512	chrX	19512951	19513250	+	0	NA	intron (NM_001001671, intron 1 of 28)	intron (NM_001001671, intron 1 of 28)	2161	NM_001001671	389840		NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
198735	chr6	108498051	108498150	+	0	NA	intron (NM_001323005, intron 10 of 11)	MLT1H|LTR|ERVL-MaLR	-61725	NM_201559	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
6325	chr1	27662421	27663530	+	0	NA	promoter-TSS (NR_151722)	promoter-TSS (NR_151722)	-253	NR_151722	111216282		NR_151722	ENSG00000233975	LINC02574	HEAL	long intergenic non-protein coding RNA 2574	ncRNA
18453	chr1	161541821	161542530	+	0	NA	3' UTR (NM_001329120, exon 6 of 6)	3' UTR (NM_001329120, exon 6 of 6)	7643	NM_000569	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
232987	chr9	136984921	136986180	+	0	NA	3' UTR (NM_207510, exon 3 of 3)	3' UTR (NM_207510, exon 3 of 3)	2557	NM_207510	401562		NM_207510	ENSG00000214402	LCNL1	-	lipocalin like 1	protein-coding
222064	chr8	130317621	130317880	+	0	NA	intron (NM_001362924, intron 3 of 30)	L2c|LINE|L2	-21217	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
102989	chr17	76735091	76735850	+	0	NA	TTS (NR_030366)	TTS (NR_030366)	1078	NR_030366	693221		NR_030366	ENSG00000283805	MIR636	MIRN636|hsa-mir-636	microRNA 636	ncRNA
228200	chr9	97741101	97741550	+	0	NA	intron (NR_147055, intron 5 of 10)	CpG	-43916	NR_149094	7507		NM_000380	ENSG00000136936	XPA	XP1|XPAC	XPA, DNA damage recognition and repair factor	protein-coding
55604	chr12	106896371	106896830	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-59122	NM_001319666	90488		NM_152261	ENSG00000151135	TMEM263	C12orf23	transmembrane protein 263	protein-coding
125072	chr2	9642801	9643150	+	0	NA	Intergenic	Intergenic	-11978	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
88842	chr16	87502451	87502950	+	0	NA	intron (NR_110943, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	8513	NR_110943	101928737		NR_110943	ENSG00000288568	ZCCHC14-DT	-	ZCCHC14 divergent transcript	ncRNA
119740	chr19	41270901	41271100	+	0	NA	intron (NM_144732, intron 2 of 14)	intron (NM_144732, intron 2 of 14)	5919	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
116543	chr19	18208271	18209030	+	0	NA	3' UTR (NM_001369701, exon 14 of 14)	3' UTR (NM_001369701, exon 14 of 14)	3920	NR_134910	102725254		NR_134910	ENSG00000268650	LOC102725254	-	uncharacterized LOC102725254	ncRNA
137182	chr2	191134021	191134450	+	0	NA	intron (NM_003151, intron 3 of 23)	L1PB2|LINE|L1	16759	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
127210	chr2	38590001	38590780	+	0	NA	intron (NM_138394, intron 2 of 12)	intron (NM_138394, intron 2 of 12)	12538	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
185559	chr5	131371451	131372400	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	107872	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
60430	chr13	40995001	40996450	+	0	NA	intron (NM_001370329, intron 1 of 9)	L1MC1|LINE|L1	-12826	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
6377	chr1	27876801	27877080	+	0	NA	intron (NM_001039477, intron 2 of 3)	intron (NM_001039477, intron 2 of 3)	4396	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
172105	chr4	1081251	1081750	+	0	NA	intron (NM_001131034, intron 6 of 9)	intron (NM_001131034, intron 6 of 9)	32064	NR_159498	285498		NM_194439	ENSG00000178222	RNF212	SPGF62|ZHP3	ring finger protein 212	protein-coding
220707	chr8	101886871	101887430	+	0	NA	5' UTR (NM_001040624, exon 5 of 8)	5' UTR (NM_001040624, exon 5 of 8)	-96181	NM_032041	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
197117	chr6	57274221	57274350	+	0	NA	Intergenic	L1PA3|LINE|L1	-10939	NR_109774	100506188		NR_109774		LINC03001	-	long intergenic non-protein coding RNA 3001	ncRNA
30267	chr10	75143451	75143750	+	0	NA	intron (NM_144660, intron 1 of 4)	L1MEc|LINE|L1	31944	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
158544	chr3	4270671	4271030	+	0	NA	Intergenic	Intergenic	-32454	NM_001276325	6419		NM_006515	ENSG00000170364	SETMAR	METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
69917	chr14	99515821	99516950	+	0	NA	intron (NM_001144995, intron 4 of 5)	MIR1_Amn|SINE|MIR	34976	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
159762	chr3	16292571	16292930	+	0	NA	intron (NM_001352980, intron 6 of 9)	L1MB8|LINE|L1	27538	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
45203	chr11	117816651	117817050	+	0	NA	intron (NM_001367905, intron 1 of 6)	intron (NM_001367905, intron 1 of 6)	664	NM_001367905	57453		NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
50625	chr12	48701871	48702030	+	0	NA	intron (NM_001240, intron 3 of 8)	AluSx1|SINE|Alu	14757	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
149492	chr21	32414771	32414930	+	0	NA	intron (NM_001320744, intron 1 of 5)	intron (NM_001320744, intron 1 of 5)	2144	NR_135467	59271		NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21	eva-1 homolog C	protein-coding
48226	chr12	8229721	8230180	+	0	NA	Intergenic	Intergenic	-2332	NM_018088	55138		NM_018088	ENSG00000171847	FAM90A1	-	family with sequence similarity 90 member A1	protein-coding
6949	chr1	31753571	31754330	+	0	NA	intron (NM_001294336, intron 4 of 31)	intron (NM_001294336, intron 4 of 31)	4785	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
82317	chr16	15682021	15682400	+	0	NA	intron (NM_017668, intron 4 of 8)	AluJb|SINE|Alu	31965	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
68479	chr14	87994771	87995680	+	0	NA	Intergenic	Intergenic	-1560	NM_001201402	2581		NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
213505	chr7	139062751	139063100	+	0	NA	intron (NM_020119, intron 8 of 12)	AluSc8|SINE|Alu	-18768	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
57681	chr12	122839121	122839550	+	0	NA	intron (NM_001303097, intron 1 of 17)	intron (NM_001303097, intron 1 of 17)	3878	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
23322	chr1	228094671	228095030	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	-2413	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
120135	chr19	42207651	42208580	+	0	NA	intron (NR_073046, intron 3 of 4)	intron (NR_073046, intron 3 of 4)	9562	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
112153	chr19	5625771	5626580	+	0	NA	intron (NM_001320571, intron 1 of 18)	MIR|SINE|MIR	3092	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
231102	chr9	129806351	129806650	+	0	NA	intron (NR_134113, intron 2 of 4)	intron (NR_134113, intron 2 of 4)	3316	NM_001317894	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
49107	chr12	14765371	14765530	+	0	NA	Intergenic	L1PA17|LINE|L1	5681	NM_175054	121504		NM_175054	ENSG00000197837	H4C16	H4-16|H4/p|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST4H4	H4 histone 16	protein-coding
71284	chr14	105275851	105277050	+	0	NA	intron (NM_001242788, intron 1 of 16)	intron (NM_001242788, intron 1 of 16)	-24324	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
13666	chr1	116561601	116561930	+	0	NA	intron (NR_026665, intron 1 of 5)	MIRb|SINE|MIR	-1654	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
17340	chr1	156482401	156482930	+	0	NA	intron (NM_001271629, intron 2 of 10)	intron (NM_001271629, intron 2 of 10)	8022	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
142649	chr20	5787951	5788600	+	0	NA	intron (NM_001303477, intron 3 of 3)	intron (NM_001303477, intron 3 of 3)	37874	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
14816	chr1	146292071	146292230	+	0	NA	Intergenic	Intergenic	-5623	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
167180	chr3	128125501	128125700	+	0	NA	intron (NM_001319086, intron 1 of 9)	intron (NM_001319086, intron 1 of 9)	-1788	NM_003707	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
128830	chr2	63058871	63060130	+	0	NA	Intergenic	Intergenic	8670	NM_014562	5013		NM_014562	ENSG00000115507	OTX1	-	orthodenticle homeobox 1	protein-coding
192019	chr6	16422551	16423130	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	184253	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
155931	chr22	39658251	39659350	+	0	NA	intron (NM_001003406, intron 10 of 35)	intron (NM_001003406, intron 10 of 35)	88047	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
100492	chr17	61903301	61903550	+	0	NA	intron (NM_020748, intron 9 of 24)	HAL1|LINE|L1	24557	NM_020748	57508		NM_020748	ENSG00000108506	INTS2	INT2|KIAA1287	integrator complex subunit 2	protein-coding
59846	chr13	30463951	30465300	+	0	NA	promoter-TSS (NM_001313892)	promoter-TSS (NM_001313892)	-298	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
150858	chr21	44083171	44084600	+	0	NA	intron (NM_003274, intron 14 of 22)	intron (NM_003274, intron 14 of 22)	9561	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
83054	chr16	22330371	22330530	+	0	NA	intron (NM_001258036, intron 19 of 19).2	intron (NM_001258036, intron 19 of 19).2	33041	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
15095	chr1	148527801	148528030	+	0	NA	Intergenic	AluSz|SINE|Alu	-44613	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
38244	chr11	36483201	36483400	+	0	NA	TTS (NM_145803)	TTS (NM_145803)	26972	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
111128	chr19	3250621	3251080	+	0	NA	intron (NR_033342, intron 1 of 12)	L1MB3|LINE|L1	25572	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
139141	chr2	219031421	219031680	+	0	NA	exon (NM_001278295, exon 7 of 13)	exon (NM_001278295, exon 7 of 13)	9966	NM_001278296	255101		NM_152389	ENSG00000181378	CFAP65	CCDC108|SPGF40	cilia and flagella associated protein 65	protein-coding
103285	chr17	77821171	77821780	+	0	NA	Intergenic	Intergenic	62612	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
125168	chr2	10045851	10046530	+	0	NA	exon (NM_001177716, exon 2 of 4)	exon (NM_001177716, exon 2 of 4)	1945	NM_001177718	8462		NM_003597	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	KLF transcription factor 11	protein-coding
145930	chr20	46020471	46020900	+	0	NA	intron (NR_147699, intron 1 of 2)	L2a|LINE|L2	-1001	NM_001134771	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
83542	chr16	27867451	27867930	+	0	NA	intron (NM_001323901, intron 2 of 5)	intron (NM_001323901, intron 2 of 5)	20467	NM_144675	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
5134	chr1	24894201	24894600	+	0	NA	Intergenic	Intergenic	25016	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
93326	chr17	18188121	18189100	+	0	NA	intron (NM_017758, intron 1 of 3)	intron (NM_017758, intron 1 of 3)	4782	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
15060	chr1	148444701	148445430	+	0	NA	intron (NR_027468, intron 1 of 4)	intron (NR_027468, intron 1 of 4)	14855	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
12152	chr1	100246701	100247450	+	0	NA	intron (NM_001918, intron 1 of 10)	L2c|LINE|L2	2759	NM_001918	1629		NM_001918	ENSG00000137992	DBT	BCATE2|BCKAD-E2|BCKADE2|BCKDH-E2|BCOADC-E2|E2|E2B	dihydrolipoamide branched chain transacylase E2	protein-coding
213164	chr7	131692021	131692330	+	0	NA	Intergenic	Intergenic	-135547	NM_005397	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
140645	chr2	233557351	233557650	+	0	NA	intron (NM_001382296, intron 4 of 32)	MamRep434|DNA|TcMar-Tigger	9282	NM_018218	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
91875	chr17	7251011	7253350	+	0	NA	promoter-TSS (NM_001143775)	promoter-TSS (NM_001143775)	-21	NM_203414	23587		NM_015362	ENSG00000170291	ELP5	C17orf81|DERP6|HSPC002|MST071|MSTP071	elongator acetyltransferase complex subunit 5	protein-coding
50272	chr12	46355071	46355430	+	0	NA	Intergenic	Intergenic	17523	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
11556	chr1	91116771	91117430	+	0	NA	Intergenic	MER39|LTR|ERV1	-94845	NM_032186	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
210232	chr7	99369051	99369350	+	0	NA	Intergenic	Intergenic	-5530	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
190015	chr5	177489401	177489600	+	0	NA	TTS (NM_213636)	TTS (NM_213636)	8104	NR_103804	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
2314	chr1	9101571	9101730	+	0	NA	3' UTR (NM_024980, exon 4 of 4)	3' UTR (NM_024980, exon 4 of 4)	27452	NM_024980	80045		NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
29034	chr10	67387221	67387480	+	0	NA	intron (NM_001291133, intron 6 of 8)	L1PA3|LINE|L1	16060	NR_106973	102466814		NR_106973	ENSG00000276866	MIR7151	hsa-mir-7151	microRNA 7151	ncRNA
192313	chr6	21597971	21598330	+	0	NA	3' UTR (NM_003107, exon 1 of 1)	3' UTR (NM_003107, exon 1 of 1)	4399	NM_003107	6659		NM_003107	ENSG00000124766	SOX4	CSS10|EVI16	SRY-box transcription factor 4	protein-coding
222408	chr8	134334071	134334230	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-263921	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
233006	chr9	137009951	137010050	+	0	NA	exon (NM_001606, exon 42 of 49)	exon (NM_001606, exon 42 of 49)	-13432	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
4528	chr1	21901751	21902250	+	0	NA	intron (NM_001291860, intron 1 of 96)	intron (NM_001291860, intron 1 of 96)	35310	NM_005529	3339		NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
79649	chr16	1190401	1191600	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	34268	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
228814	chr9	111975771	111975930	+	0	NA	Intergenic	Intergenic	43750	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
227380	chr9	89501551	89503150	+	0	NA	Intergenic	L2c|LINE|L2	-4237	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
117357	chr19	19548001	19548400	+	0	NA	Intergenic	Intergenic	9935	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
125196	chr2	10189721	10190430	+	0	NA	intron (NR_164157, intron 11 of 12)	intron (NR_164157, intron 11 of 12)	2596	NR_036222	100422929		NR_036222	ENSG00000265418	MIR4261	-	microRNA 4261	ncRNA
171497	chr3	196611851	196612750	+	0	NA	Intergenic	Intergenic	20287	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
189475	chr5	173071901	173072300	+	0	NA	intron (NM_001168393, intron 1 of 3)	intron (NM_001168393, intron 1 of 3)	15748	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
107748	chr18	50289201	50289400	+	0	NA	promoter-TSS (NM_014593)	promoter-TSS (NM_014593)	-978	NM_001101654	30827		NM_014593	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
36719	chr11	9091101	9091730	+	0	NA	exon (NM_001330199, exon 1 of 22)	exon (NM_001330199, exon 1 of 22)	184	NM_001367977	57758		NM_020974	ENSG00000175356	SCUBE2	CEGB1|CEGF1|CEGP1|scube/You	signal peptide, CUB domain and EGF like domain containing 2	protein-coding
225690	chr9	36492321	36493180	+	0	NA	Intergenic	AluYm1|SINE|Alu	-80112	NR_046337	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
46787	chr11	130087151	130087800	+	0	NA	intron (NM_001243299, intron 1 of 16)	intron (NM_001243299, intron 1 of 16)	16907	NM_001243299	334		NM_001642	ENSG00000084234	APLP2	APLP-2|APPH|APPL2|CDEBP	amyloid beta precursor like protein 2	protein-coding
172564	chr4	2420351	2420730	+	0	NA	intron (NM_001193282, intron 1 of 15)	intron (NM_001193282, intron 1 of 15)	1585	NM_001193282	402160		NM_001193282	ENSG00000206113	CFAP99	-	cilia and flagella associated protein 99	protein-coding
177286	chr4	109564021	109564480	+	0	NA	intron (NM_017918, intron 1 of 7)	AluSc8|SINE|Alu	4004	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
221884	chr8	128551901	128552300	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	12579	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
106158	chr18	9919771	9919930	+	0	NA	intron (NM_194434, intron 1 of 5)	L2b|LINE|L2	5834	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
188643	chr5	157230421	157230680	+	0	NA	intron (NM_005546, intron 7 of 16)	intron (NM_005546, intron 7 of 16)	-35573	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
164534	chr3	63939601	63940500	+	0	NA	intron (NM_001177387, intron 3 of 12)	L1M4|LINE|L1	-27744	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
127037	chr2	37163801	37164280	+	0	NA	Intergenic	AluY|SINE|Alu	-6993	NM_002759	5610		NM_002759	ENSG00000055332	EIF2AK2	DYT33|EIF2AK1|LEUDEN|PKR|PPP1R83|PRKR	eukaryotic translation initiation factor 2 alpha kinase 2	protein-coding
52526	chr12	56102551	56103600	+	0	NA	3' UTR (NM_001982, exon 28 of 28)	3' UTR (NM_001982, exon 28 of 28)	-1484	NM_006191	5036		NM_006191	ENSG00000170515	PA2G4	EBP1|HG4-1|ITAF45|p38-2G4	proliferation-associated 2G4	protein-coding
170109	chr3	183163701	183163900	+	0	NA	Intergenic	MIRc|SINE|MIR	-1066	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
109645	chr19	1002751	1002850	+	0	NA	intron (NM_138690, intron 1 of 8)	L2b|LINE|L2	2381	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
61451	chr13	52004671	52004830	+	0	NA	intron (NM_001330579, intron 1 of 18)	MER57E1|LTR|ERV1	6700	NM_000053	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
65459	chr14	51772071	51772430	+	0	NA	Intergenic	SATR1|Satellite|Satellite	54967	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
51122	chr12	50099671	50100230	+	0	NA	3' UTR (NM_003076, exon 13 of 13)	3' UTR (NM_003076, exon 13 of 13)	-4058	NM_001257199	2819		NM_005276	ENSG00000167588	GPD1	GPD-C|GPDH-C|HTGTI	glycerol-3-phosphate dehydrogenase 1	protein-coding
171511	chr3	196636621	196637300	+	0	NA	Intergenic	Intergenic	-2734	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
97288	chr17	43136571	43136730	+	0	NA	intron (NR_138145, intron 4 of 7)	L1PA5|LINE|L1	11093	NR_138145	10230		NM_005821	ENSG00000198496	NBR2	NCRNA00192	neighbor of BRCA1 lncRNA 2	ncRNA
225946	chr9	40999921	41000700	+	0	NA	intron (NR_156730, intron 2 of 6)	AluJr|SINE|Alu	8049	NR_034006	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
108473	chr18	70641201	70641400	+	0	NA	intron (NR_160904, intron 2 of 2)	intron (NR_160904, intron 2 of 2)	9654	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
69725	chr14	98226101	98226650	+	0	NA	Intergenic	Intergenic	-248251	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
231474	chr9	131348851	131349150	+	0	NA	Intergenic	Intergenic	-24651	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
63393	chr13	114067411	114068600	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	9950	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171836	chr4	686901	687100	+	0	NA	intron (NM_032219, intron 1 of 9)	intron (NM_032219, intron 1 of 9)	2151	NM_001378060	84179		NM_032219	ENSG00000169026	SLC49A3	LP2561|MFSD7	solute carrier family 49 member 3	protein-coding
196508	chr6	43671771	43672000	+	0	NA	TTS (NM_001193341)	TTS (NM_001193341)	15906	NM_018135	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
227234	chr9	89277101	89277680	+	0	NA	Intergenic	L1MA8|LINE|L1	-33805	NM_001827	1164		NM_001827	ENSG00000123975	CKS2	CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding
86595	chr16	67277501	67277900	+	0	NA	promoter-TSS (NM_001129727)	promoter-TSS (NM_001129727)	-462	NM_001129727	25894		NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
178581	chr4	151145301	151145700	+	0	NA	intron (NM_001378121, intron 11 of 20)	LTR7Y|LTR|ERV1	30052	NM_001128924	152503		NM_001009555	ENSG00000109686	SH3D19	EBP|EVE1|Eve-1|Kryn|SH3P19	SH3 domain containing 19	protein-coding
188744	chr5	157547901	157548700	+	0	NA	intron (NM_033274, intron 3 of 22)	L2c|LINE|L2	27475	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
97939	chr17	45172301	45173500	+	0	NA	Intergenic	Intergenic	-1415	NR_135646	105371795		NR_135646	ENSG00000267288	LOC105371795	-	uncharacterized LOC105371795	ncRNA
186028	chr5	134001851	134002630	+	0	NA	intron (NM_003374, intron 1 of 8)	intron (NM_003374, intron 1 of 8)	2528	NR_036624								
201862	chr6	150502271	150502630	+	0	NA	Intergenic	Intergenic	-97435	NM_001329804	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
155759	chr22	39223121	39223830	+	0	NA	3' UTR (NM_002608, exon 7 of 7)	3' UTR (NM_002608, exon 7 of 7)	17434	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
136840	chr2	183122671	183123080	+	0	NA	intron (NM_001287584, intron 2 of 9)	MLT1D|LTR|ERVL-MaLR	-1480	NR_109856	129401		NM_138285	ENSG00000163002	NUP35	MP-44|MP44|NP44|NUP53	nucleoporin 35	protein-coding
29817	chr10	72309651	72310450	+	0	NA	Intergenic	Intergenic	36126	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
203315	chr6	170152201	170153000	+	0	NA	Intergenic	Intergenic	-8042	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
122139	chr19	48861951	48862650	+	0	NA	intron (NM_020904, intron 3 of 19)	AluSz|SINE|Alu	6317	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
10304	chr1	64860021	64860280	+	0	NA	exon (NM_001321853, exon 11 of 27)	exon (NM_001321853, exon 11 of 27)	106399	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
237445	chrX	119686241	119686780	+	0	NA	intron (NM_145799, intron 1 of 10)	intron (NM_145799, intron 1 of 10)	6658	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
136375	chr2	176107571	176108050	+	0	NA	exon (NM_021192, exon 1 of 2)	exon (NM_021192, exon 1 of 2)	530	NM_021192	3237		NM_021192	ENSG00000128713	HOXD11	HOX4|HOX4F	homeobox D11	protein-coding
189562	chr5	175398021	175398300	+	0	NA	Intergenic	L1PA2|LINE|L1	46022	NM_000794	1812		NM_000794	ENSG00000184845	DRD1	D1R|DADR|DRD1A	dopamine receptor D1	protein-coding
37511	chr11	18525001	18525450	+	0	NA	intron (NM_006292, intron 1 of 9)	intron (NM_006292, intron 1 of 9)	1717	NM_006292	7251		NM_006292	ENSG00000074319	TSG101	TSG10|VPS23	tumor susceptibility 101	protein-coding
86560	chr16	67200071	67200430	+	0	NA	exon (NM_024712, exon 5 of 20)	exon (NM_024712, exon 5 of 20)	1119	NM_024712	79767		NM_024712	ENSG00000102890	ELMO3	CED-12|CED12|ELMO-3	engulfment and cell motility 3	protein-coding
91020	chr17	2808251	2808550	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	11962	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
27968	chr10	42630321	42631050	+	0	NA	intron (NM_001305039, intron 4 of 5)	L2a|LINE|L2	7885	NM_001305037	7582		NM_006955	ENSG00000196693	ZNF33B	KOX2|KOX31|ZNF11B	zinc finger protein 33B	protein-coding
19903	chr1	183989021	183989280	+	0	NA	intron (NM_001303421, intron 1 of 11)	intron (NM_001303421, intron 1 of 11)	48578	NM_015101	23127		NM_015101	ENSG00000198756	COLGALT2	C1orf17|ColGalT 2|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding
48514	chr12	9942001	9942400	+	0	NA	intron (NR_104634, intron 2 of 4)	L2c|LINE|L2	1295	NR_104634	100506159		NR_104634	ENSG00000225231	LINC02470	-	long intergenic non-protein coding RNA 2470	ncRNA
211380	chr7	105009971	105010130	+	0	NA	TTS (NR_024586)	TTS (NR_024586)	4091	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
166432	chr3	113830601	113831100	+	0	NA	Intergenic	AluSx|SINE|Alu	-7938	NM_017577	54762		NM_017577	ENSG00000178075	GRAMD1C	-	GRAM domain containing 1C	protein-coding
202734	chr6	158992351	158992650	+	0	NA	intron (NR_144434, intron 2 of 8)	AluJb|SINE|Alu	7687	NR_144434	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
137205	chr2	191193601	191194530	+	0	NA	Intergenic	Intergenic	-42469	NM_001243835	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
11752	chr1	92300001	92300200	+	0	NA	intron (NM_024813, intron 1 of 12)	Tigger3a|DNA|TcMar-Tigger	1041	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
35783	chr11	2169471	2169630	+	0	NA	intron (NM_000360, intron 2 of 12)	intron (NM_000360, intron 2 of 12)	2265	NM_199293	7054		NM_000360	ENSG00000180176	TH	DYT14|DYT5b|TYH	tyrosine hydroxylase	protein-coding
235538	chrX	47234701	47234900	+	0	NA	intron (NM_001371072, intron 1 of 20)	L1MA8|LINE|L1	1791	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
140971	chr2	237946171	237946330	+	0	NA	Intergenic	AluJb|SINE|Alu	-20695	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
34468	chr10	132454451	132455280	+	0	NA	Intergenic	Intergenic	9676	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
34100	chr10	125821771	125821930	+	0	NA	intron (NR_136677, intron 1 of 10)	intron (NR_136677, intron 1 of 10)	1408	NM_001324038	7390		NM_000375	ENSG00000188690	UROS	UROIIIS	uroporphyrinogen III synthase	protein-coding
230472	chr9	128214721	128215150	+	0	NA	intron (NM_001374269, intron 1 of 21)	intron (NM_001374269, intron 1 of 21)	-10713	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
134364	chr2	136212701	136213500	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-94951	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
75940	chr15	70258451	70259290	+	0	NA	Intergenic	Intergenic	-160953	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
40698	chr11	64781421	64781680	+	0	NA	Intergenic	AluSx|SINE|Alu	-3008	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
200864	chr6	138670471	138670630	+	0	NA	Intergenic	AluYa5|SINE|Alu	-21118	NR_033896	441172		NR_033896		NHSL1-AS1	-	NHSL1 antisense RNA 1	ncRNA
218310	chr8	42618701	42619350	+	0	NA	Intergenic	Intergenic	-77071	NM_006749	6575		NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC2|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
210098	chr7	97183921	97184050	+	0	NA	Intergenic	AluYa5|SINE|Alu	66287	NM_020186	57001		NM_020186	ENSG00000196636	SDHAF3	ACN9|DC11|LYRM10|Sdh7	succinate dehydrogenase complex assembly factor 3	protein-coding
59427	chr13	25371871	25372600	+	0	NA	exon (NM_016529, exon 1 of 37)	exon (NM_016529, exon 1 of 37)	261	NM_016529	51761		NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
89067	chr16	88457871	88458400	+	0	NA	intron (NM_153813, intron 1 of 9)	MIR|SINE|MIR	4855	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
217884	chr8	37870901	37871650	+	0	NA	intron (NM_025151, intron 3 of 4)	intron (NM_025151, intron 3 of 4)	-21414	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
226071	chr9	61869071	61870050	+	0	NA	promoter-TSS (NR_121606)	promoter-TSS (NR_121606)	-422	NR_121606	102723709		NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
150970	chr21	44324471	44324950	+	0	NA	intron (NM_001002021, intron 20 of 24)	intron (NM_001002021, intron 20 of 24)	13628	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
8445	chr1	40688221	40688480	+	0	NA	TTS (NR_024567)	TTS (NR_024567)	-3354	NM_001142588	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
111037	chr19	3092371	3092530	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1912	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
5564	chr1	25908971	25910030	+	0	NA	Intergenic	L2b|LINE|L2	-2623	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
121357	chr19	46839421	46839680	+	0	NA	exon (NM_001301081, exon 3 of 5)	exon (NM_001301081, exon 3 of 5)	-8846	NR_024258	100170220		NR_024258		SNAR-E	-	small NF90 (ILF3) associated RNA E	snRNA
193635	chr6	30811951	30812700	+	0	NA	TTS (NR_130726)	TTS (NR_130726)	18334	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
184489	chr5	100852951	100854180	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-37000	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
76882	chr15	77982251	77982550	+	0	NA	Intergenic	Intergenic	11825	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
24333	chr1	239387571	239387730	+	0	NA	intron (NM_001375981, intron 1 of 5)	CpG	1082	NM_001375982	1131		NM_000740	ENSG00000133019	CHRM3	EGBRS|HM3|PBS|m3AChR	cholinergic receptor muscarinic 3	protein-coding
224930	chr9	33002671	33002930	+	0	NA	intron (NM_001369001, intron 1 of 6)	intron (NM_001369001, intron 1 of 6)	-1159	NM_001195251	54840		NM_017692	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
230565	chr9	128502201	128502400	+	0	NA	intron (NR_031672, intron 2 of 2).4	L1MB7|LINE|L1	-2392	NM_001499	2733		NM_001499	ENSG00000119392	GLE1	CAAHC|CAAHD|GLE1L|LCCS|LCCS1|hGLE1	GLE1 RNA export mediator	protein-coding
211234	chr7	102643771	102645380	+	0	NA	intron (NM_032959, intron 4 of 8)	AluSx|SINE|Alu	-1784	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
109971	chr19	1395071	1395980	+	0	NA	TTS (NM_024407)	TTS (NM_024407)	6017	NM_138924	2593		NM_000156	ENSG00000130005	GAMT	CCDS2|HEL-S-20|PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
202633	chr6	158753321	158753580	+	0	NA	intron (NM_001318745, intron 10 of 14)	AluY|SINE|Alu	11303	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
35821	chr11	2263201	2263400	+	0	NA	Intergenic	Intergenic	7288	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
31829	chr10	99536301	99536500	+	0	NA	3' UTR (NM_145285, exon 2 of 2)	3' UTR (NM_145285, exon 2 of 2)	3458	NM_145285	159296		NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
16364	chr1	154341101	154341300	+	0	NA	intron (NM_001367934, intron 12 of 26)	intron (NM_001367934, intron 12 of 26)	12402	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
52722	chr12	56600501	56600700	+	0	NA	intron (NM_001351156, intron 25 of 30)	intron (NM_001351156, intron 25 of 30)	29726	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
159598	chr3	15162771	15162930	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	43109	NR_027927	344875		NR_027927	ENSG00000291281	COL6A4P1	COL6A4|COL6A4P|DIVA|DVWA|FAME3|VWA6	collagen type VI alpha 4 pseudogene 1	pseudo
119518	chr19	40532501	40533130	+	0	NA	intron (NM_025213, intron 2 of 9)	intron (NM_025213, intron 2 of 9)	2324	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
80500	chr16	2719571	2720180	+	0	NA	intron (NM_001318395, intron 1 of 4)	intron (NM_001318395, intron 1 of 4)	349	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
169045	chr3	153159171	153159330	+	0	NA	Intergenic	Intergenic	-2976	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
54263	chr12	88035271	88036600	+	0	NA	intron (NM_001009894, intron 1 of 6)	intron (NM_001009894, intron 1 of 6)	399	NM_001009894	91298		NM_001009894	ENSG00000133641	RLIG1	C12orf29|Rnl	RNA 5'-phosphate and 3'-OH ligase 1	protein-coding
147672	chr20	62300521	62300830	+	0	NA	Intergenic	Intergenic	-2221	NM_001281437	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
26931	chr10	26481251	26481350	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	42959	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
176820	chr4	102553671	102554080	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-51389	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
96624	chr17	40565001	40566580	+	0	NA	promoter-TSS (NM_001838)	promoter-TSS (NM_001838)	-318	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
220882	chr8	103500401	103500830	+	0	NA	promoter-TSS (NR_145710)	promoter-TSS (NR_145710)	5	NM_001348497	9699		NM_014677	ENSG00000176406	RIMS2	CRSDS|OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
78036	chr15	90013271	90014030	+	0	NA	intron (NM_198526, intron 1 of 4)	L1MEd|LINE|L1	6895	NR_036135	100422841		NR_036135	ENSG00000265871	MIR3174	-	microRNA 3174	ncRNA
57389	chr12	121816771	121816930	+	0	NA	intron (NM_001353345, intron 7 of 16)	intron (NM_001353345, intron 7 of 16)	12841	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
88211	chr16	81830651	81830950	+	0	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	51509	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
122248	chr19	49022901	49023800	+	0	NA	intron (NM_000737, intron 2 of 2)	intron (NM_000737, intron 2 of 2)	1025	NM_000737	1082		NM_000737	ENSG00000104827	CGB3	CGB|CGB5|CGB7|CGB8|LHB|hCGB	chorionic gonadotropin subunit beta 3	protein-coding
35128	chr11	704751	705180	+	0	NA	TTS (NM_001276253)	TTS (NM_001276253)	-1266	NM_022772	64787		NM_022772	ENSG00000177106	EPS8L2	DFNB106|EPS8R2	EPS8 signaling adaptor L2	protein-coding
92945	chr17	17001601	17002430	+	0	NA	Intergenic	Intergenic	13686	NR_146886	105371562		NR_146886	ENSG00000230969	LINC02090	-	long intergenic non-protein coding RNA 2090	ncRNA
189766	chr5	176646501	176648300	+	0	NA	promoter-TSS (NM_012171)	promoter-TSS (NM_012171)	-84	NM_130465	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
144946	chr20	37062751	37063250	+	0	NA	intron (NM_183404, intron 7 of 20)	intron (NM_183404, intron 7 of 20)	32997	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
228257	chr9	98001201	98001600	+	0	NA	intron (NM_006401, intron 3 of 6)	AluY|SINE|Alu	18059	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
1998	chr1	6734601	6734800	+	0	NA	Intergenic	Intergenic	7173	NR_104621	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
66831	chr14	64791601	64791830	+	0	NA	intron (NM_001355436, intron 15 of 35)	intron (NM_001355436, intron 15 of 35)	-6029	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
102567	chr17	75858401	75859400	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-2464	NM_001348170	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
194178	chr6	32115851	32116150	+	0	NA	intron (NM_001136153, intron 17 of 17).4	intron (NM_001136153, intron 17 of 17).4	-6662	NM_001365276	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
24654	chr1	246929001	246929200	+	0	NA	intron (NR_136586, intron 1 of 36)	intron (NR_136586, intron 1 of 36)	2258	NM_015446	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
232569	chr9	136368151	136368250	+	0	NA	intron (NM_052813, intron 7 of 12)	intron (NM_052813, intron 7 of 12)	-4456	NR_073565	728489		NM_001080849	ENSG00000213221	DNLZ	C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2	DNL-type zinc finger	protein-coding
198656	chr6	107819921	107821300	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	3703	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
151290	chr21	45508521	45508780	+	0	NA	intron (NM_001379500, intron 38 of 41)	intron (NM_001379500, intron 38 of 41)	26106	NM_001205207	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
111210	chr19	3479701	3481230	+	0	NA	promoter-TSS (NM_001136503)	promoter-TSS (NM_001136503)	60	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
159566	chr3	14915751	14916050	+	0	NA	intron (NM_152536, intron 11 of 19)	intron (NM_152536, intron 11 of 19)	31605	NR_046252	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
47241	chr12	1092971	1093500	+	0	NA	intron (NM_178039, intron 3 of 17)	intron (NM_178039, intron 3 of 17)	65487	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
101494	chr17	67648621	67649350	+	0	NA	intron (NM_181671, intron 6 of 9)	AluJr|SINE|Alu	-68848	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
3570	chr1	16169571	16169730	+	0	NA	Intergenic	Intergenic	-13581	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
109308	chr19	574751	576030	+	0	NA	intron (NM_001322243, intron 1 of 7)	intron (NM_001322243, intron 1 of 7)	2794	NM_198589	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
238493	chrX	153570951	153571250	+	0	NA	intron (NM_021949, intron 20 of 20)	intron (NM_021949, intron 20 of 20)	28039	NM_001130997	92002		NM_152274	ENSG00000262919	CCNQ	CycM|FAM58A	cyclin Q	protein-coding
104263	chr17	80765401	80766300	+	0	NA	intron (NM_020761, intron 6 of 33)	L1MC|LINE|L1	39782	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
132186	chr2	101830401	101830750	+	0	NA	intron (NM_001384572, intron 5 of 29)	intron (NM_001384572, intron 5 of 29)	132310	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
27324	chr10	30526701	30527050	+	0	NA	Intergenic	L1MEd|LINE|L1	92229	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
36207	chr11	3454601	3455230	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	22158	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
66138	chr14	60220071	60220480	+	0	NA	Intergenic	Intergenic	-25475	NM_177952	5494		NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
198906	chr6	109705001	109705700	+	0	NA	intron (NM_014845, intron 1 of 22)	intron (NM_014845, intron 1 of 22)	14054	NM_014845	9896		NM_014845	ENSG00000112367	FIG4	ALS11|BOP|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1	FIG4 phosphoinositide 5-phosphatase	protein-coding
232680	chr9	136518821	136519330	+	0	NA	TTS (NR_039820)	TTS (NR_039820)	551	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
141291	chr2	240235151	240235450	+	0	NA	Intergenic	Intergenic	-94642	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
186137	chr5	134158171	134158730	+	0	NA	exon (NM_006930, exon 5 of 5)	exon (NM_006930, exon 5 of 5)	18500	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
93113	chr17	17688601	17688800	+	0	NA	intron (NM_030665, intron 1 of 5)	AluSg|SINE|Alu	7242	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
189798	chr5	176817051	176817700	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	6816	NM_133369	90249		NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
206395	chr7	30829421	30829680	+	0	NA	intron (NR_037598, intron 8 of 19)	intron (NR_037598, intron 8 of 19)	58133	NM_032222	84182		NM_032222	ENSG00000106125	MINDY4	AQP-1|AQP1|C7orf67|CHIP28|FAM188B	MINDY lysine 48 deubiquitinase 4	protein-coding
96977	chr17	42262721	42262980	+	0	NA	intron (NM_012448, intron 1 of 18)	(TA)n|Simple_repeat|Simple_repeat	13541	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
118280	chr19	35279971	35280500	+	0	NA	TTS (NM_207291)	TTS (NM_207291)	-2293	NM_021175	57817		NM_021175	ENSG00000105697	HAMP	HEPC|HFE2B|LEAP1|PLTR	hepcidin antimicrobial peptide	protein-coding
203426	chr7	335571	335930	+	0	NA	Intergenic	Intergenic	-43675	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
12911	chr1	110615721	110616050	+	0	NA	intron (NM_001204269, intron 1 of 4)	intron (NM_001204269, intron 1 of 4)	-9527	NM_004974	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
114611	chr19	12966571	12968280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2193	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
87052	chr16	68309901	68310100	+	0	NA	intron (NM_032178, intron 2 of 4)	L2a|LINE|L2	946	NM_032178	84138		NM_032178	ENSG00000103061	SLC7A6OS	EPM12|Iwr1	solute carrier family 7 member 6 opposite strand	protein-coding
154691	chr22	36381471	36382230	+	0	NA	intron (NM_002473, intron 1 of 40)	L1ME4b|LINE|L1	6117	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
67161	chr14	68782001	68783280	+	0	NA	Intergenic	Intergenic	10427	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
102710	chr17	76176621	76176880	+	0	NA	intron (NM_052916, intron 2 of 18)	MER52D|LTR|ERV1	-35505	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
41402	chr11	66015471	66016230	+	0	NA	TTS (NM_053054)	TTS (NM_053054)	3842	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
199874	chr6	127811601	127812350	+	0	NA	intron (NM_001164685, intron 4 of 6)	intron (NM_001164685, intron 4 of 6)	43213	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
52214	chr12	54379501	54380330	+	0	NA	intron (NM_001290002, intron 3 of 8)	intron (NM_001290002, intron 3 of 8)	4818	NM_001290001	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
140308	chr2	232484801	232485200	+	0	NA	exon (NM_004826, exon 4 of 18)	exon (NM_004826, exon 4 of 18)	2834	NM_001290787	9427		NM_004826	ENSG00000171551	ECEL1	DA5D|DINE|ECEX|XCE	endothelin converting enzyme like 1	protein-coding
187695	chr5	143355651	143356150	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	47383	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
79341	chr16	584801	585200	+	0	NA	TTS (NM_148920)	TTS (NM_148920)	-4357	NM_001172663	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
216638	chr8	22111521	22112280	+	0	NA	Intergenic	Intergenic	-2481	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
124914	chr2	8513751	8514050	+	0	NA	Intergenic	Intergenic	69892	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
118001	chr19	33905921	33906580	+	0	NA	Intergenic	CpG	109380	NM_001129994	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
208500	chr7	69412571	69412730	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	184974	NR_148926	100507468		NR_108105	ENSG00000234215	CT66	-	cancer/testis associated transcript 66	ncRNA
128054	chr2	47785021	47785280	+	0	NA	intron (NM_001281494, intron 1 of 9)	intron (NM_001281494, intron 1 of 9)	1195	NM_001281494	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
163860	chr3	52490901	52491780	+	0	NA	intron (NM_007184, intron 19 of 20)	intron (NM_007184, intron 19 of 20)	-3998	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
171479	chr3	196505771	196506250	+	0	NA	TTS (NM_001320473)	TTS (NM_001320473)	-2242	NM_152617	165918		NM_152617	ENSG00000163961	RNF168	RIDL|hRNF168	ring finger protein 168	protein-coding
67868	chr14	74248771	74249330	+	0	NA	intron (NM_182894, intron 3 of 4)	intron (NM_182894, intron 3 of 4)	9601	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
210066	chr7	96285451	96286950	+	0	NA	intron (NM_001160210, intron 2 of 17)	AluYj4|SINE|Alu	35898	NM_014251	10165		NM_014251	ENSG00000004864	SLC25A13	ARALAR2|CITRIN|CTLN2|NICCD	solute carrier family 25 member 13	protein-coding
83746	chr16	28667601	28667830	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-20843	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
87544	chr16	71911771	71911930	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluJb|SINE|Alu	16319	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
185385	chr5	127936471	127936950	+	0	NA	intron (NM_001317938, intron 6 of 6)	intron (NM_001317938, intron 6 of 6)	146465	NR_152805	644873		NR_015360	ENSG00000245937	SLC12A2-DT	LINC01184	SLC12A2 divergent transcript	ncRNA
207086	chr7	39977921	39978180	+	0	NA	intron (NM_003718, intron 1 of 13)	intron (NM_003718, intron 1 of 13)	27690	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
179121	chr4	168907221	168907680	+	0	NA	intron (NM_001166108, intron 15 of 21)	intron (NM_001166108, intron 15 of 21)	75355	NM_001367570	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
127128	chr2	37660851	37661350	+	0	NA	intron (NM_001371569, intron 1 of 1)	(TA)n|Simple_repeat|Simple_repeat	10542	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
16928	chr1	155903171	155903330	+	0	NA	intron (NM_001256821, intron 5 of 5)	AluY|SINE|Alu	7668	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
7487	chr1	33190571	33190930	+	0	NA	Intergenic	LTR50|LTR|ERVL	-8707	NM_018207	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
118334	chr19	35596501	35597150	+	0	NA	Intergenic	Intergenic	-1070	NR_110750	102723617		NR_110750	ENSG00000224910	LINC01766	-	long intergenic non-protein coding RNA 1766	ncRNA
144690	chr20	36456901	36457300	+	0	NA	intron (NM_001365621, intron 7 of 12)	L2a|LINE|L2	-4368	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
230104	chr9	127578671	127579650	+	0	NA	promoter-TSS (NM_001035534)	promoter-TSS (NM_001035534)	-129	NM_001035534	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
128440	chr2	55565571	55566080	+	0	NA	intron (NM_020463, intron 11 of 14)	intron (NM_020463, intron 11 of 14)	46107	NM_080667	112942		NM_080667	ENSG00000163001	CFAP36	BARTL1|CCDC104	cilia and flagella associated protein 36	protein-coding
61047	chr13	48240601	48241300	+	0	NA	intron (NM_021999, intron 1 of 5)	L1ME2|LINE|L1	7744	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
71243	chr14	105185771	105186930	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-5027	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
217011	chr8	23176851	23177550	+	0	NA	Intergenic	Intergenic	-13173	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
38076	chr11	35193871	35194780	+	0	NA	intron (NM_001202556, intron 5 of 7)	intron (NM_001202556, intron 5 of 7)	31375	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
107510	chr18	47933771	47933930	+	0	NA	Intergenic	L2c|LINE|L2	-2704	NM_001135937	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
183644	chr5	80248551	80249000	+	0	NA	intron (NM_001174072, intron 1 of 11)	Tigger8|DNA|TcMar-Tigger	7273	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
47958	chr12	6863701	6864180	+	0	NA	non-coding (NR_168449, exon 16 of 20)	non-coding (NR_168449, exon 16 of 20)	-3480	NM_001159287	7167		NM_000365	ENSG00000111669	TPI1	HEL-S-49|TIM|TPI|TPID	triosephosphate isomerase 1	protein-coding
156333	chr22	40692321	40692630	+	0	NA	Intergenic	MER51E|LTR|ERV1	12991	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
173499	chr4	9479621	9479750	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	35151	NM_001040448	644414		NM_001040448	ENSG00000186146	DEFB131A	DEFB-31|DEFB131	defensin beta 131A	protein-coding
31560	chr10	97251271	97251830	+	0	NA	intron (NM_001204300, intron 5 of 10)	GA-rich|Low_complexity|Low_complexity	19107	NM_001256423	84986		NM_032900	ENSG00000213390	ARHGAP19	-	Rho GTPase activating protein 19	protein-coding
194062	chr6	31861521	31861990	+	0	NA	intron (NM_000434, intron 2 of 5).3	L2a|LINE|L2	1066	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
52655	chr12	56297401	56298130	+	0	NA	intron (NM_004077, intron 1 of 10)	intron (NM_004077, intron 1 of 10)	2565	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
38283	chr11	43311611	43313150	+	0	NA	intron (NM_001142931, intron 1 of 12)	intron (NM_001142931, intron 1 of 12)	384	NR_024625	8539		NM_006595	ENSG00000166181	API5	AAC-11|AAC11	apoptosis inhibitor 5	protein-coding
70792	chr14	103531771	103532400	+	0	NA	intron (NM_152307, intron 2 of 3)	intron (NM_152307, intron 2 of 3)	2889	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
145637	chr20	44883501	44883780	+	0	NA	Intergenic	Intergenic	-2065	NM_139323	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
104686	chr17	81514401	81516200	+	0	NA	Intergenic	CpG-11886	-2501	NR_037688	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
101006	chr17	64661051	64663230	+	0	NA	5' UTR (NM_022739, exon 1 of 19)	5' UTR (NM_022739, exon 1 of 19)	167	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
150699	chr21	43715171	43716380	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-3354	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
74081	chr15	52679001	52680080	+	0	NA	promoter-TSS (NM_001385017)	promoter-TSS (NM_001385017)	-152	NR_169540	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
223813	chr8	144823201	144823800	+	0	NA	intron (NR_147501, intron 1 of 4)	intron (NR_147501, intron 1 of 4)	3540	NR_147501	100130027		NR_147501		LOC100130027	-	uncharacterized LOC100130027	ncRNA
110619	chr19	2200221	2200700	+	0	NA	intron (NM_032482, intron 8 of 27)	intron (NM_032482, intron 8 of 27)	33689	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
204180	chr7	2468701	2469250	+	0	NA	Intergenic	Intergenic	7408	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
218163	chr8	41944201	41944850	+	0	NA	intron (NM_001305878, intron 12 of 13)	intron (NM_001305878, intron 12 of 13)	-47784	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
42613	chr11	72143951	72144400	+	0	NA	Intergenic	Intergenic	8450	NM_000804	2352		NM_000804	ENSG00000110203	FOLR3	FR-G|FR-gamma|FRgamma|gamma-hFR	folate receptor gamma	protein-coding
31595	chr10	97357871	97358230	+	0	NA	intron (NM_015179, intron 33 of 33)	intron (NM_015179, intron 33 of 33)	-23321	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
1034	chr1	1877701	1878330	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	13072	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
20832	chr1	201505371	201505730	+	0	NA	intron (NM_004078, intron 1 of 5)	intron (NM_004078, intron 1 of 5)	1289	NM_001193571	1465		NM_004078	ENSG00000159176	CSRP1	CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141|HEL-S-286	cysteine and glycine rich protein 1	protein-coding
85711	chr16	56611371	56611530	+	0	NA	Intergenic	MIR|SINE|MIR	2866	NM_005953	4502		NM_005953	ENSG00000125148	MT2A	MT-2|MT-II|MT2	metallothionein 2A	protein-coding
81719	chr16	11262801	11263180	+	0	NA	Intergenic	L1ME3G|LINE|L1	6335	NM_005425	7142		NM_005425	ENSG00000178279	TNP2	TP2	transition protein 2	protein-coding
24215	chr1	236120621	236121230	+	0	NA	Intergenic	Intergenic	-21614	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
131315	chr2	96122901	96123200	+	0	NA	TTS (NM_001002036)	TTS (NM_001002036)	-6479	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
106483	chr18	14435571	14435730	+	0	NA	Intergenic	Intergenic	63056	NR_024076	440224		NR_024076	ENSG00000293262	CXADRP3	-	CXADR pseudogene 3	pseudo
195573	chr6	37501751	37502200	+	0	NA	Intergenic	Intergenic	-2082	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
23104	chr1	226673751	226674000	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	1193	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
91390	chr17	4585821	4586080	+	0	NA	intron (NM_001375361, intron 1 of 6)	intron (NM_001375361, intron 1 of 6)	1421	NM_001375361	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
77925	chr15	89316601	89316900	+	0	NA	3' UTR (NM_001376910, exon 38 of 38)	3' UTR (NM_001376910, exon 38 of 38)	10060	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
58488	chr12	132157501	132157850	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	13218	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
9595	chr1	52141501	52142880	+	0	NA	promoter-TSS (NM_004799)	promoter-TSS (NM_004799)	96	NM_004799	9372		NM_004799	ENSG00000157077	ZFYVE9	MADHIP|NSP|PPP1R173|SARA|SMADIP	zinc finger FYVE-type containing 9	protein-coding
110787	chr19	2436121	2437000	+	0	NA	intron (NM_032737, intron 4 of 11)	CpG	-1560	NR_106958	102466806		NR_106958	ENSG00000283728	MIR7108	hsa-mir-7108	microRNA 7108	ncRNA
107767	chr18	50879701	50880830	+	0	NA	intron (NM_001168335, intron 1 of 13)	MIR|SINE|MIR	1147	NM_001168335	4200		NM_002396	ENSG00000082212	ME2	ODS1	malic enzyme 2	protein-coding
11625	chr1	91731401	91733450	+	0	NA	intron (NR_036634, intron 6 of 17)	MER5A|DNA|hAT-Charlie	153726	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
183743	chr5	81292171	81292330	+	0	NA	intron (NR_034122, intron 1 of 3)	LTR77|LTR|ERV1	9319	NR_034122	100131067		NR_034121	ENSG00000247572	CKMT2-AS1	-	CKMT2 antisense RNA 1	ncRNA
237769	chrX	129761101	129761300	+	0	NA	exon (NM_003399, exon 17 of 21)	exon (NM_003399, exon 17 of 21)	-18749	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
234716	chrX	21438871	21439250	+	0	NA	intron (NM_001168647, intron 3 of 20)	L1MD|LINE|L1	64642	NM_001330773	22866		NM_014927	ENSG00000149970	CNKSR2	CNK2|KSR2|MAGUIN|MRXSHG	connector enhancer of kinase suppressor of Ras 2	protein-coding
143271	chr20	25197301	25198230	+	0	NA	promoter-TSS (NR_109994)	promoter-TSS (NR_109994)	-873	NR_109994	101926889		NR_109994		LOC101926889	-	uncharacterized LOC101926889	ncRNA
133862	chr2	128323901	128324900	+	0	NA	Intergenic	MIRb|SINE|MIR	-5532	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
103474	chr17	78347401	78347830	+	0	NA	Intergenic	Intergenic	12052	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
123585	chr19	54462601	54463300	+	0	NA	TTS (NM_052925)	TTS (NM_052925)	828	NM_198988	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
153270	chr22	24144171	24145030	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-36887	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
138385	chr2	204072501	204072730	+	0	NA	Intergenic	LTR16C|LTR|ERVL	135852	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
70981	chr14	104708421	104709330	+	0	NA	intron (NM_022489, intron 10 of 22)	intron (NM_022489, intron 10 of 22)	-15354	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
236414	chrX	71252571	71252730	+	0	NA	exon (NM_005096, exon 2 of 25)	exon (NM_005096, exon 2 of 25)	1490	NM_201599	9203		NM_005096	ENSG00000147130	ZMYM3	DXS6673E|MYM|XFIM|XLID112|ZNF198L2|ZNF261	zinc finger MYM-type containing 3	protein-coding
91365	chr17	4539921	4540580	+	0	NA	intron (NM_014520, intron 25 of 25)	(TG)n|Simple_repeat|Simple_repeat	15134	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
29618	chr10	71766351	71766650	+	0	NA	intron (NM_022153, intron 1 of 6)	MIRb|SINE|MIR	7020	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
220750	chr8	102287051	102287930	+	0	NA	exon (NM_015902, exon 37 of 59)	exon (NM_015902, exon 37 of 59)	48039	NR_125415	101927221		NR_125415		UBR5-DT	UBR5-AS1	UBR5 divergent transcript	ncRNA
6743	chr1	30716251	30717130	+	0	NA	intron (NM_002379, intron 4 of 7)	intron (NM_002379, intron 4 of 7)	-2082	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
90836	chr17	2335771	2336900	+	0	NA	exon (NM_018128, exon 1 of 15)	exon (NM_018128, exon 1 of 15)	122	NM_018128	55720		NM_018128	ENSG00000167721	TSR1	-	TSR1 ribosome maturation factor	protein-coding
176571	chr4	98657121	98657800	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	1151	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
57187	chr12	121444721	121444980	+	0	NA	promoter-TSS (NR_106957)	promoter-TSS (NR_106957)	-498	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
3483	chr1	16008901	16009700	+	0	NA	TTS (NM_178840)	TTS (NM_178840)	5064	NM_178840	149563		NM_178840	ENSG00000183888	SRARP	C1orf64|ERRF	steroid receptor associated and regulated protein	protein-coding
103102	chr17	77345451	77345950	+	0	NA	intron (NM_006640, intron 1 of 10)	LTR41C|LTR|ERVL	26185	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
43814	chr11	86608021	86608600	+	0	NA	intron (NR_147828, intron 2 of 14)	intron (NR_147828, intron 2 of 14)	63888	NR_147831	10873		NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
44664	chr11	110434751	110434850	+	0	NA	intron (NM_004109, intron 1 of 3)	AluJo|SINE|Alu	4852	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
77717	chr15	85698271	85698430	+	0	NA	intron (NM_007200, intron 17 of 36)	AluSz|SINE|Alu	60375	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
10122	chr1	59295221	59295730	+	0	NA	Intergenic	MIRc|SINE|MIR	-1338	NM_001350793	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
49601	chr12	27383951	27384300	+	0	NA	intron (NM_020183, intron 5 of 16)	intron (NM_020183, intron 5 of 16)	51289	NM_020183	56938		NM_020183	ENSG00000029153	BMAL2	ARNTL2|CLIF|MOP9|PASD9|bHLHe6	basic helix-loop-helix ARNT like 2	protein-coding
99999	chr17	57847451	57847950	+	0	NA	intron (NM_016070, intron 2 of 4)	intron (NM_016070, intron 2 of 4)	2344	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
17019	chr1	156052751	156054200	+	0	NA	intron (NM_020131, intron 1 of 10)	CpG	323	NM_001304342	56893		NM_020131	ENSG00000160803	UBQLN4	A1U|A1Up|C1orf6|CIP75|UBIN	ubiquilin 4	protein-coding
125147	chr2	10010501	10010900	+	0	NA	Intergenic	CpG	32701	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
195240	chr6	36336671	36337230	+	0	NA	promoter-TSS (NM_001010903)	promoter-TSS (NM_001010903)	-62	NM_001010903	389384		NM_001010903	ENSG00000189325	BNIP5	C6orf222	BCL2 interacting protein 5	protein-coding
196621	chr6	44260801	44261450	+	0	NA	intron (NM_004556, intron 3 of 5)	L2a|LINE|L2	-3235	NM_001286511	347734		NM_178148	ENSG00000157593	SLC35B2	HLD26|PAPST1|SLL|UGTrel4	solute carrier family 35 member B2	protein-coding
171446	chr3	196313921	196314180	+	0	NA	intron (NM_152773, intron 2 of 4)	AluSp|SINE|Alu	4190	NM_001351628	255758		NM_152773	ENSG00000213123	DYNLT2B	SRTD17|TCTEX1D2	dynein light chain Tctex-type 2B	protein-coding
230	chr1	869321	870180	+	0	NA	intron (NR_027055, intron 2 of 2)	intron (NR_027055, intron 2 of 2)	7052	NR_027055	284593		NR_027055	ENSG00000230368	FAM41C	-	family with sequence similarity 41 member C	ncRNA
64032	chr14	22521671	22522100	+	0	NA	Intergenic	Intergenic	35177	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
3820	chr1	16863071	16863600	+	0	NA	Intergenic	Intergenic	-4314	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
189284	chr5	172106551	172107750	+	0	NA	intron (NM_005990, intron 5 of 18)	intron (NM_005990, intron 5 of 18)	81074	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
84692	chr16	30781901	30782100	+	0	NA	exon (NM_001345970, exon 3 of 3)	exon (NM_001345970, exon 3 of 3)	5205	NM_001080417	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
48135	chr12	7904801	7905200	+	0	NA	Intergenic	Intergenic	-13804	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
175623	chr4	76154951	76155050	+	0	NA	Intergenic	MER11C|LTR|ERVK	-6485	NR_103780	53371		NM_017426	ENSG00000138750	NUP54	DYT37	nucleoporin 54	protein-coding
30494	chr10	79288051	79288580	+	0	NA	intron (NM_020338, intron 8 of 24)	intron (NM_020338, intron 8 of 24)	-59154	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
51304	chr12	51264971	51266000	+	0	NA	intron (NM_001031628, intron 2 of 3)	L1MB3|LINE|L1	4725	NM_001033873	57228		NM_001031628	ENSG00000170545	SMAGP	hSMAGP	small cell adhesion glycoprotein	protein-coding
121965	chr19	48482901	48483680	+	0	NA	TTS (NM_004228)	TTS (NM_004228)	13921	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
62710	chr13	104535321	104535400	+	0	NA	Intergenic	AluSx|SINE|Alu	-930507	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
45522	chr11	118734821	118735280	+	0	NA	Intergenic	AluYc|SINE|Alu	-55400	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
136430	chr2	176509021	176509280	+	0	NA	Intergenic	Intergenic	91902	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
153543	chr22	26586451	26587480	+	0	NA	intron (NM_001362923, intron 1 of 7)	intron (NM_001362923, intron 1 of 7)	3167	NM_003595	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
115925	chr19	16619171	16620300	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	8469	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
237835	chrX	130083821	130084350	+	0	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	26412	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
9897	chr1	54374971	54375130	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	31344	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
112488	chr19	6424121	6426050	+	0	NA	promoter-TSS (NM_001366299)	promoter-TSS (NM_001366299)	-274	NM_001366300	8570		NM_003685	ENSG00000088247	KHSRP	FBP2|FUBP2|KSRP|p75	KH-type splicing regulatory protein	protein-coding
117300	chr19	19492901	19493300	+	0	NA	intron (NM_001384539, intron 4 of 10)	AluSc|SINE|Alu	22448	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
11272	chr1	89103451	89103950	+	0	NA	Intergenic	Intergenic	22414	NM_004120	2634		NM_004120	ENSG00000162645	GBP2	-	guanylate binding protein 2	protein-coding
50556	chr12	48057371	48058050	+	0	NA	intron (NM_001267594, intron 13 of 17)	AluSz|SINE|Alu	-47543	NM_001354741	5213		NM_000289	ENSG00000152556	PFKM	ATP-PFK|GSD7|PFK-1|PFK-A|PFK1|PFKA|PFKX|PPP1R122	phosphofructokinase, muscle	protein-coding
234133	chrX	9995801	9996200	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-19254	NM_015691	55841		NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
156039	chr22	39969901	39970300	+	0	NA	intron (NM_001291828, intron 4 of 4)	intron (NM_001291828, intron 4 of 4)	23283	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
231285	chr9	130029171	130029800	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	13704	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
207534	chr7	44820171	44820530	+	0	NA	Intergenic	AluSz|SINE|Alu	23669	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
33650	chr10	119723451	119724150	+	0	NA	Intergenic	Intergenic	-2247	NM_001243195	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
180481	chr5	12948101	12948300	+	0	NA	intron (NR_147005, intron 2 of 4)	L1MCa|LINE|L1	84686	NR_147005	105374658		NR_147005		LINC02220	-	long intergenic non-protein coding RNA 2220	ncRNA
60932	chr13	46295421	46296550	+	0	NA	TTS (NR_047493)	TTS (NR_047493)	1859	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
186269	chr5	134533201	134534650	+	0	NA	intron (NM_015288, intron 1 of 10)	AluJb|SINE|Alu	7817	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
121851	chr19	48210071	48210250	+	0	NA	non-coding (NR_033680, exon 9 of 9)	non-coding (NR_033680, exon 9 of 9)	30903	NR_033679	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
111804	chr19	4457171	4458950	+	0	NA	promoter-TSS (NM_025241)	promoter-TSS (NM_025241)	-266	NM_025241	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
35056	chr11	597851	598030	+	0	NA	intron (NM_001286582, intron 8 of 17)	intron (NM_001286582, intron 8 of 17)	18010	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
225997	chr9	41332071	41332730	+	0	NA	Intergenic	Intergenic	-26462	NR_148348	107984035		NR_148348		LOC107984035	-	uncharacterized LOC107984035	ncRNA
193552	chr6	30615811	30616600	+	0	NA	non-coding (NR_164781, exon 2 of 2).2	non-coding (NR_164781, exon 2 of 2).2	1038	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
27094	chr10	27447501	27447700	+	0	NA	Intergenic	Intergenic	-33232	NM_001034842	374308		NM_001034842	ENSG00000182077	PTCHD3	PTR	patched domain containing 3 (gene/pseudogene)	protein-coding
189330	chr5	172167701	172167900	+	0	NA	intron (NM_005990, intron 1 of 18)	MER3|DNA|hAT-Charlie	20424	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
172282	chr4	1548701	1549900	+	0	NA	Intergenic	Intergenic	134691	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
112615	chr19	6750851	6751150	+	0	NA	intron (NR_110231, intron 14 of 14)	AluSz|SINE|Alu	11320	NM_001288963	9322		NM_004240	ENSG00000125733	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
152695	chr22	21628001	21628350	+	0	NA	TTS (NM_001017964)	TTS (NM_001017964)	1847	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
175724	chr4	77592951	77593480	+	0	NA	intron (NM_006419, intron 1 of 4)	intron (NM_006419, intron 1 of 4)	-12605	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
238215	chrX	139816271	139816630	+	0	NA	intron (NM_173694, intron 4 of 29)	intron (NM_173694, intron 4 of 29)	15791	NM_001010986	286410		NM_173694	ENSG00000101974	ATP11C	ATPIG|ATPIQ|HACXL	ATPase phospholipid transporting 11C	protein-coding
43037	chr11	74018251	74018850	+	0	NA	intron (NM_001286577, intron 32 of 32)	intron (NM_001286577, intron 32 of 32)	-9313	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
172913	chr4	3496551	3496900	+	0	NA	intron (NM_001301071, intron 7 of 9)	intron (NM_001301071, intron 7 of 9)	12181	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
144979	chr20	37290851	37291180	+	0	NA	intron (NM_001376533, intron 1 of 4)	intron (NM_001376533, intron 1 of 4)	746	NM_001376533	63905		NM_022077	ENSG00000101363	MANBAL	-	mannosidase beta like	protein-coding
127737	chr2	43568201	43568930	+	0	NA	intron (NR_144316, intron 14 of 36)	intron (NR_144316, intron 14 of 36)	27409	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
13938	chr1	120232671	120233730	+	0	NA	Intergenic	Intergenic	-56680	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
4802	chr1	23591401	23592000	+	0	NA	Intergenic	Intergenic	-32199	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
20549	chr1	198705201	198705730	+	0	NA	intron (NM_002838, intron 8 of 32)	AluSx|SINE|Alu	66425	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
107048	chr18	32137401	32137750	+	0	NA	Intergenic	AluSz6|SINE|Alu	44969	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
202850	chr6	159766601	159767000	+	0	NA	intron (NM_001303253, intron 2 of 8)	intron (NM_001303253, intron 2 of 8)	4321	NM_001303253	39		NM_005891	ENSG00000120437	ACAT2	-	acetyl-CoA acetyltransferase 2	protein-coding
56986	chr12	120556251	120556750	+	0	NA	intron (NM_001330474, intron 4 of 16)	AluY|SINE|Alu	22144	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
19062	chr1	169895571	169895730	+	0	NA	Intergenic	LTR8|LTR|ERV1	-1691	NM_181093	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
176191	chr4	83482721	83482980	+	0	NA	intron (NM_139076, intron 1 of 8)	intron (NM_139076, intron 1 of 8)	2250	NM_139076	84142		NM_139076	ENSG00000163322	ABRAXAS1	ABRA1|CCDC98|FAM175A	abraxas 1, BRCA1 A complex subunit	protein-coding
122316	chr19	49129671	49129930	+	0	NA	intron (NR_103842, intron 5 of 28)	intron (NR_103842, intron 5 of 28)	10256	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
153372	chr22	24503201	24503550	+	0	NA	intron (NM_016327, intron 3 of 9)	HAL1|LINE|L1	8043	NM_016327	51733		NM_016327	ENSG00000100024	UPB1	BUP1	beta-ureidopropionase 1	protein-coding
81757	chr16	11494751	11494850	+	0	NA	intron (NM_001370704, intron 10 of 66)	intron (NM_001370704, intron 10 of 66)	29540	NR_110907	101927131		NR_110907	ENSG00000262999	LOC101927131	-	uncharacterized LOC101927131	ncRNA
92833	chr17	16205571	16205800	+	0	NA	intron (NM_006311, intron 1 of 45)	AluSp|SINE|Alu	9849	NM_006311	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
93353	chr17	18228101	18228500	+	0	NA	intron (NM_004140, intron 1 of 22)	L2a|LINE|L2	2665	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
10	chr1	21951	22050	+	0	NA	intron (NR_024540, intron 2 of 10)	MLT1K|LTR|ERVL-MaLR	-4564	NR_107063	102465910		NR_107063	ENSG00000275449	MIR6859-3	hsa-mir-6859-3	microRNA 6859-3	ncRNA
195193	chr6	36075701	36076000	+	0	NA	exon (NM_139013, exon 7 of 10)	exon (NM_139013, exon 7 of 10)	48042	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
132998	chr2	111537171	111537600	+	0	NA	Intergenic	Intergenic	-42224	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
13289	chr1	113046171	113047030	+	0	NA	intron (NR_103777, intron 2 of 2)	MamGypLTR3|LTR|Gypsy	26502	NR_103777	100996251		NR_103777	ENSG00000238198	LRIG2-DT	-	LRIG2 divergent transcript	ncRNA
233706	chrX	1248021	1248680	+	0	NA	Intergenic	Intergenic	-20464	NM_172247	1438		NM_006140	ENSG00000198223	CSF2RA	CD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMCSFR-alpha|GMR|GMR-alpha|SMDP4|alphaGMR	colony stimulating factor 2 receptor subunit alpha	protein-coding
227105	chr9	85745221	85745480	+	0	NA	Intergenic	Intergenic	-3321	NM_015239	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
190715	chr6	285271	286280	+	0	NA	Intergenic	Intergenic	-6282	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
135450	chr2	161237001	161238200	+	0	NA	intron (NR_110593, intron 3 of 3)	intron (NR_110593, intron 3 of 3)	-7139	NR_110164	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
50202	chr12	46189771	46190630	+	0	NA	intron (NM_001278387, intron 17 of 17)	L1PA6|LINE|L1	76316	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
91805	chr17	7039621	7040400	+	0	NA	3' UTR (NM_201566, exon 4 of 4)	3' UTR (NM_201566, exon 4 of 4)	3995	NM_201566	201232		NM_201566	ENSG00000174327	SLC16A13	MCT13	solute carrier family 16 member 13	protein-coding
95499	chr17	36295201	36295450	+	0	NA	intron (NR_164156, intron 1 of 5)	intron (NR_164156, intron 1 of 5)	21126	NR_164156	101929950		NR_164156		LOC101929950	-	puromycin-sensitive aminopeptidase-like protein	pseudo
91491	chr17	4902601	4904480	+	0	NA	promoter-TSS (NM_000080)	promoter-TSS (NM_000080)	-442	NM_000080	1145		NM_000080	ENSG00000108556	CHRNE	ACHRE|CMS1A1|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|FIM1|FIMG|FIMG1|MGI|SCCMS	cholinergic receptor nicotinic epsilon subunit	protein-coding
63783	chr14	21267901	21268450	+	0	NA	intron (NM_004500, intron 1 of 8)	intron (NM_004500, intron 1 of 8)	1267	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
48253	chr12	8449051	8449750	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-6562	NM_001317999	93978		NM_001007033	ENSG00000205846	CLEC6A	CLEC4N|CLECSF10|dectin-2|hDECTIN-2	C-type lectin domain containing 6A	protein-coding
212479	chr7	128530101	128533050	+	0	NA	Intergenic	CpG	54827	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
37239	chr11	14544671	14544930	+	0	NA	intron (NM_148976, intron 2 of 10)	L1MB7|LINE|L1	-24355	NM_001143937	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
10374	chr1	64959601	64960000	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	6749	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
144524	chr20	35707871	35708280	+	0	NA	intron (NM_184234, intron 13 of 16)	intron (NM_184234, intron 13 of 16)	8670	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
46397	chr11	126315551	126315930	+	0	NA	intron (NM_014026, intron 2 of 5)	AluSx1|SINE|Alu	11680	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
80329	chr16	2457221	2457550	+	0	NA	3' UTR (NM_001761, exon 17 of 17)	3' UTR (NM_001761, exon 17 of 17)	-2724	NM_025108	80178		NM_025108	ENSG00000162062	TEDC2	C16orf59	tubulin epsilon and delta complex 2	protein-coding
155059	chr22	37517601	37517950	+	0	NA	intron (NM_014550, intron 2 of 19)	MIR|SINE|MIR	1640	NM_014550	29775		NM_014550	ENSG00000100065	CARD10	BIMP1|CARMA3|IMD89	caspase recruitment domain family member 10	protein-coding
18648	chr1	166944571	166945130	+	0	NA	intron (NM_199351, intron 3 of 9)	L2c|LINE|L2	30690	NM_199351	387597		NM_199351	ENSG00000143195	ILDR2	C1orf32|dJ782G3.1	immunoglobulin like domain containing receptor 2	protein-coding
63128	chr13	113420951	113421300	+	0	NA	TTS (NM_199162)	TTS (NM_199162)	-6732	NM_001304433	113622		NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
224803	chr9	22452501	22452710	+	0	NA	3' UTR (NM_022160, exon 2 of 2)	3' UTR (NM_022160, exon 2 of 2)	5781	NM_022160	63951		NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
209325	chr7	76167821	76168080	+	0	NA	Intergenic	AluY|SINE|Alu	-33946	NM_001291831	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
186728	chr5	139275701	139276600	+	0	NA	promoter-TSS (NR_145749)	promoter-TSS (NR_145749)	-30	NR_145749	109616975		NR_145749	ENSG00000252213	SNORA74D	-	small nucleolar RNA, H/ACA box 74D	snoRNA
232148	chr9	134060421	134060680	+	0	NA	intron (NM_007371, intron 1 of 11)	AluJr|SINE|Alu	6260	NR_135126	100130548		NR_135126	ENSG00000235138	LOC100130548	-	uncharacterized LOC100130548	ncRNA
188044	chr5	149828151	149828730	+	0	NA	intron (NM_001172699, intron 3 of 10)	MIR|SINE|MIR	56500	NM_001172699	133522		NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
215877	chr8	7680351	7680800	+	0	NA	Intergenic	CpG	-89009	NR_046351								
40616	chr11	64686951	64687550	+	0	NA	intron (NM_138732, intron 4 of 19)	intron (NM_138732, intron 4 of 19)	35947	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
58215	chr12	127165571	127166700	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-105738	NR_104646	101927592		NR_104646	ENSG00000249345	LINC02405	-	long intergenic non-protein coding RNA 2405	ncRNA
37988	chr11	35038971	35039330	+	0	NA	Intergenic	Intergenic	97313	NR_039836	100616437		NR_039836	ENSG00000251862	MIR1343	-	microRNA 1343	ncRNA
72469	chr15	32461971	32462330	+	0	NA	intron (NR_135833, intron 1 of 1).2	AluSx1|SINE|Alu	-6516	NM_001277308	728047		NM_001277308	ENSG00000206127	GOLGA8O	-	golgin A8 family member O	protein-coding
63821	chr14	21453571	21453730	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	2473	NM_001170629	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
25763	chr10	11089271	11089430	+	0	NA	intron (NR_046108, intron 4 of 6)	intron (NR_046108, intron 4 of 6)	16138	NR_046108	439950		NR_046108	ENSG00000237986	CELF2-AS2	-	CELF2 antisense RNA 2	ncRNA
142344	chr20	3746221	3746480	+	0	NA	intron (NM_001197327, intron 7 of 12)	AluY|SINE|Alu	13665	NM_001197327	116835		NM_052970	ENSG00000132622	HSPA12B	C20orf60	heat shock protein family A (Hsp70) member 12B	protein-coding
24488	chr1	244322551	244323630	+	0	NA	Intergenic	Intergenic	-29545	NM_001276348	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
210475	chr7	100153601	100154300	+	0	NA	TTS (NM_018275)	TTS (NM_018275)	2719	NR_039802	100616439		NR_039802	ENSG00000284518	MIR4658	-	microRNA 4658	ncRNA
64345	chr14	24054301	24054700	+	0	NA	exon (NM_138360, exon 5 of 40).2	exon (NM_138360, exon 5 of 40).2	2491	NM_138360	90668		NM_138360	ENSG00000186648	CARMIL3	C14orf121|LRRC16B|crml-1	capping protein regulator and myosin 1 linker 3	protein-coding
222286	chr8	133455151	133455250	+	0	NA	3' UTR (NM_003033, exon 9 of 9)	3' UTR (NM_003033, exon 9 of 9)	116687	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
227564	chr9	92139101	92139500	+	0	NA	TTS (NR_015444)	TTS (NR_015444)	-2167	NR_027341	158314		NR_027341		LINC00475	C9orf44	long intergenic non-protein coding RNA 475	ncRNA
146907	chr20	51553371	51553530	+	0	NA	intron (NM_001258292, intron 1 of 9)	AluY|SINE|Alu	9389	NM_001258294	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
179890	chr5	665551	666680	+	0	NA	exon (NM_007030, exon 3 of 4)	exon (NM_007030, exon 3 of 4)	27237	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
45086	chr11	117080001	117080200	+	0	NA	intron (NM_001281748, intron 1 of 24)	L1ME4b|LINE|L1	18328	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
49177	chr12	15227251	15227350	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-5883	NM_032918	85004		NM_032918	ENSG00000134533	RERG	-	RAS like estrogen regulated growth inhibitor	protein-coding
117202	chr19	19388401	19389330	+	0	NA	intron (NM_001384535, intron 1 of 10)	intron (NM_001384535, intron 1 of 10)	3022	NM_001384518	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
181347	chr5	40436451	40437200	+	0	NA	Intergenic	Intergenic	-243090	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
155353	chr22	38271721	38274030	+	0	NA	promoter-TSS (NM_001195071)	promoter-TSS (NM_001195071)	135	NM_001195072	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
192687	chr6	26270401	26271790	+	0	NA	exon (NM_003534, exon 1 of 1)	exon (NM_003534, exon 1 of 1)	318	NM_003534	8355		NM_003534	ENSG00000273983	H3C8	H3/h|H3C1|H3C10|H3C11|H3C12|H3C2|H3C3|H3C4|H3C6|H3C7|H3FH|HIST1H3G	H3 clustered histone 8	protein-coding
93634	chr17	19171471	19172130	+	0	NA	Intergenic	Intergenic	-9176	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
68409	chr14	80996321	80996730	+	0	NA	intron (NM_001142626, intron 1 of 8)	intron (NM_001142626, intron 1 of 8)	40904	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
181223	chr5	39180901	39181680	+	0	NA	intron (NM_199335, intron 2 of 17)	MER3|DNA|hAT-Charlie	38273	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
23921	chr1	235062921	235063400	+	0	NA	Intergenic	Intergenic	6658	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
165920	chr3	107263301	107263780	+	0	NA	intron (NR_028302, intron 1 of 3)	A-rich|Low_complexity|Low_complexity	22848	NR_028302	344595		NR_028301	ENSG00000243701	DUBR	DUM|LINC00883|LINC0883	DPPA2 upstream binding RNA	ncRNA
52553	chr12	56144151	56144450	+	0	NA	3' UTR (NM_001184796, exon 31 of 31)	3' UTR (NM_001184796, exon 31 of 31)	-8287	NM_001199629	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
177408	chr4	112285271	112286530	+	0	NA	promoter-TSS (NM_052864)	promoter-TSS (NM_052864)	4	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
189232	chr5	171931221	171931680	+	0	NA	intron (NM_033644, intron 1 of 12)	L1MC1|LINE|L1	75188	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
138157	chr2	202381551	202382050	+	0	NA	intron (NM_001204, intron 1 of 12)	intron (NM_001204, intron 1 of 12)	5473	NM_001204	659		NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding
129401	chr2	68838921	68839500	+	0	NA	Intergenic	Intergenic	32187	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
208159	chr7	64618971	64619300	+	0	NA	TTS (NR_077227)	TTS (NR_077227)	36525	NR_033245	641746		NR_033245		LOC641746	-	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo
119454	chr19	40415851	40415950	+	0	NA	Intergenic	L2b|LINE|L2	-2522	NM_181882	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
146657	chr20	50450071	50450300	+	0	NA	Intergenic	Intergenic	-60136	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
188922	chr5	160420351	160420800	+	0	NA	Intergenic	Intergenic	-1280	NM_004219	9232		NM_004219	ENSG00000164611	PTTG1	EAP1|ECRAR|HPTTG|PTTG|TUTR1	PTTG1 regulator of sister chromatid separation, securin	protein-coding
45273	chr11	118010901	118011380	+	0	NA	Intergenic	Intergenic	24746	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
90967	chr17	2692571	2693000	+	0	NA	TTS (NR_106834)	TTS (NR_106834)	134	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
159062	chr3	11655451	11656130	+	0	NA	intron (NM_014667, intron 2 of 5)	intron (NM_014667, intron 2 of 5)	-11875	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
172380	chr4	1760701	1760900	+	0	NA	Intergenic	Intergenic	-32493	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
31693	chr10	97590001	97590630	+	0	NA	exon (NM_001009997, exon 1 of 1)	exon (NM_001009997, exon 1 of 1)	594	NM_001009997	414157		NM_001009997	ENSG00000203942	C10orf62	bA548K23.1	chromosome 10 open reading frame 62	protein-coding
42515	chr11	70397771	70398730	+	0	NA	promoter-TSS (NM_138565)	promoter-TSS (NM_138565)	-256	NM_138565	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
156528	chr22	41417851	41419850	+	0	NA	Intergenic	AluJb|SINE|Alu	27951	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
76551	chr15	75207371	75208100	+	0	NA	exon (NM_015492, exon 2 of 3)	exon (NM_015492, exon 2 of 3)	5853	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
43680	chr11	85809901	85810400	+	0	NA	intron (NM_032943, intron 1 of 18)	intron (NM_032943, intron 1 of 18)	991	NM_001365827	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
220007	chr8	90467301	90468200	+	0	NA	Intergenic	Intergenic	138313	NR_104062	101937451		NR_104062	ENSG00000253799	LINC01030	-	long intergenic non-protein coding RNA 1030	ncRNA
6370	chr1	27866801	27867000	+	0	NA	Intergenic	AluY|SINE|Alu	-5643	NM_004848	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
98944	chr17	48634921	48635180	+	0	NA	Intergenic	Intergenic	-2491	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
182258	chr5	57190351	57191030	+	0	NA	intron (NM_001331037, intron 2 of 12)	(TTAGCTC)n|Simple_repeat|Simple_repeat	15242	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
105276	chr17	82460651	82461280	+	0	NA	intron (NM_001083608, intron 2 of 9)	AluJb|SINE|Alu	2224	NM_012336	26502		NM_012336	ENSG00000141562	NARF	IOP2	nuclear prelamin A recognition factor	protein-coding
162610	chr3	48702971	48703130	+	0	NA	intron (NM_016291, intron 1 of 5)	intron (NM_016291, intron 1 of 5)	14171	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
237228	chrX	109730001	109730200	+	0	NA	intron (NM_022977, intron 1 of 16)	L1MD2|LINE|L1	-2411	NR_158569	105373311		NR_158569		LOC105373311	-	uncharacterized LOC105373311	ncRNA
195342	chr6	36626171	36626330	+	0	NA	Intergenic	AluY|SINE|Alu	-3738	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
207582	chr7	44953951	44954250	+	0	NA	Intergenic	AluSz|SINE|Alu	24915	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
161493	chr3	42525101	42525500	+	0	NA	intron (NM_004624, intron 3 of 12)	intron (NM_004624, intron 3 of 12)	7306	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
210562	chr7	100344511	100347200	+	0	NA	intron (NR_036570, intron 3 of 16)	intron (NR_036570, intron 3 of 16)	-6463	NR_103728	101752334		NR_103728		PVRIG2P	-	PVR related immunoglobulin domain containing 2, pseudogene	pseudo
11523	chr1	90973901	90974100	+	0	NA	intron (NM_201269, intron 2 of 5)	MER39|LTR|ERV1	47508	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
110251	chr19	1787821	1788330	+	0	NA	intron (NR_047593, intron 24 of 28)	intron (NR_047593, intron 24 of 28)	24201	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
120204	chr19	42289371	42289530	+	0	NA	intron (NM_001379484, intron 8 of 19)	intron (NM_001379484, intron 8 of 19)	4981	NM_015125	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
51864	chr12	53481801	53482400	+	0	NA	TTS (NM_001128912)	TTS (NM_001128912)	17358	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
132966	chr2	111473501	111473950	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	21436	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
101935	chr17	74479801	74480230	+	0	NA	intron (NM_007261, intron 4 of 6)	intron (NM_007261, intron 4 of 6)	13381	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
164264	chr3	57561601	57561800	+	0	NA	3' UTR (NM_177966, exon 3 of 3)	3' UTR (NM_177966, exon 3 of 3)	5426	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
77759	chr15	85761601	85761800	+	0	NA	intron (NM_022480, intron 2 of 2)	intron (NM_022480, intron 2 of 2)	-2975	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
9945	chr1	54588471	54588630	+	0	NA	intron (NM_015547, intron 3 of 16)	MIR|SINE|MIR	34975	NM_176782	338094		NM_176782	ENSG00000162391	FAM151A	C1orf179	family with sequence similarity 151 member A	protein-coding
167305	chr3	128683251	128683550	+	0	NA	Intergenic	Intergenic	-32582	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
172234	chr4	1337951	1338250	+	0	NA	intron (NM_001297431, intron 5 of 6)	intron (NM_001297431, intron 5 of 6)	-9108	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
94067	chr17	27466371	27467430	+	0	NA	intron (NM_001367810, intron 1 of 18)	intron (NM_001367810, intron 1 of 18)	-5064	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
17057	chr1	156099801	156100080	+	0	NA	intron (NM_001282625, intron 3 of 12)	MER5B|DNA|hAT-Charlie	-14771	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
192719	chr6	26340271	26340430	+	0	NA	Intergenic	Intergenic	-24809	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
221442	chr8	124190701	124191580	+	0	NA	Intergenic	Intergenic	-19618	NR_103547	157376		NM_182525	ENSG00000253868	FER1L6-AS2	C8orf78	FER1L6 antisense RNA 2	ncRNA
104112	chr17	80288171	80288330	+	0	NA	exon (NM_001256071, exon 4 of 68)	exon (NM_001256071, exon 4 of 68)	27398	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
16804	chr1	155559071	155560100	+	0	NA	intron (NM_018489, intron 1 of 27)	intron (NM_018489, intron 1 of 27)	-2457	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
82651	chr16	19375601	19375800	+	0	NA	Intergenic	Intergenic	-34839	NM_001308161	79838		NM_024780	ENSG00000103534	TMC5	-	transmembrane channel like 5	protein-coding
80099	chr16	2012371	2012730	+	0	NA	Intergenic	AluSp|SINE|Alu	-2729	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
46027	chr11	122658721	122658980	+	0	NA	intron (NM_032873, intron 1 of 13)	MLT1D|LTR|ERVL-MaLR	3128	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
222663	chr8	141189371	141189730	+	0	NA	intron (NM_014957, intron 19 of 22)	intron (NM_014957, intron 19 of 22)	39024	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
228781	chr9	111560871	111561130	+	0	NA	intron (NM_001146109, intron 9 of 9)	(AG)n|Simple_repeat|Simple_repeat	35821	NM_133464	158399		NM_133464	ENSG00000173258	ZNF483	ZKSCAN16|ZSCAN48	zinc finger protein 483	protein-coding
166484	chr3	114295901	114296100	+	0	NA	intron (NM_173799, intron 2 of 3)	MER5B|DNA|hAT-Charlie	1972	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
202782	chr6	159080151	159080530	+	0	NA	Intergenic	Intergenic	-35188	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
42134	chr11	67633571	67633730	+	0	NA	intron (NM_005995, intron 4 of 7)	L2a|LINE|L2	-3713	NM_001243750	254552		NM_181843	ENSG00000167799	NUDT8	-	nudix hydrolase 8	protein-coding
205224	chr7	7973051	7973450	+	0	NA	intron (NM_138426, intron 1 of 7)	intron (NM_138426, intron 1 of 7)	4454	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
101502	chr17	67688421	67689000	+	0	NA	intron (NM_181671, intron 9 of 9)	intron (NM_181671, intron 9 of 9)	-29123	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
58333	chr12	131454771	131455030	+	0	NA	Intergenic	Intergenic	107430	NR_103736	338797		NM_001025466		LINC02370	-	long intergenic non-protein coding RNA 2370	ncRNA
170886	chr3	193572351	193572680	+	0	NA	Intergenic	Intergenic	-17620	NM_032279	84239		NM_032279	ENSG00000127249	ATP13A4	-	ATPase 13A4	protein-coding
68670	chr14	90276021	90276480	+	0	NA	TTS (NM_002802)	TTS (NM_002802)	18311	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
135922	chr2	171687021	171688530	+	0	NA	promoter-TSS (NM_001271787)	promoter-TSS (NM_001271787)	20	NM_001320883	1781		NM_001378	ENSG00000077380	DYNC1I2	DIC74|DNCI2|IC2|NEDMIBA	dynein cytoplasmic 1 intermediate chain 2	protein-coding
9329	chr1	46603221	46604630	+	0	NA	intron (NR_165250, intron 1 of 9)	intron (NR_165250, intron 1 of 9)	343	NM_001377337	8569		NM_003684	ENSG00000079277	MKNK1	MNK1	MAPK interacting serine/threonine kinase 1	protein-coding
163473	chr3	50630851	50631350	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	13949	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
97176	chr17	42671421	42671750	+	0	NA	intron (NM_024927, intron 7 of 12)	intron (NM_024927, intron 7 of 12)	4426	NR_073574	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
217832	chr8	37581421	37581680	+	0	NA	Intergenic	Intergenic	-60164	NR_121621	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
221711	chr8	127196721	127197530	+	0	NA	intron (NR_120364, intron 1 of 2)	intron (NR_120364, intron 1 of 2)	502	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
194566	chr6	33407221	33407980	+	0	NA	intron (NM_002263, intron 10 of 10).3	L1MC5a|LINE|L1	-3414	NR_027692	5252		NM_002636	ENSG00000112511	PHF1	MTF2L2|PCL1|PHF2|TDRD19C|hPHF1	PHD finger protein 1	protein-coding
29696	chr10	72057701	72058000	+	0	NA	Intergenic	Intergenic	30701	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
113739	chr19	10488801	10489400	+	0	NA	intron (NM_012289, intron 5 of 5)	AluJo|SINE|Alu	13671	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
197519	chr6	75831021	75831680	+	0	NA	intron (NR_160538, intron 5 of 32)	intron (NR_160538, intron 5 of 32)	82111	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
151143	chr21	44908551	44908650	+	0	NA	intron (NM_001127491, intron 3 of 15)	LTR2C|LTR|ERV1	12299	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
185157	chr5	119330221	119331430	+	0	NA	intron (NM_001286815, intron 2 of 2)	intron (NM_001286815, intron 2 of 2)	-2350	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
1548	chr1	3478251	3478550	+	0	NA	intron (NM_014448, intron 11 of 14)	CpG	23735	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
60639	chr13	42388321	42388600	+	0	NA	Intergenic	Intergenic	-36432	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
114259	chr19	11553171	11553800	+	0	NA	3' UTR (NM_001363675, exon 6 of 6)	3' UTR (NM_001363675, exon 6 of 6)	1982	NM_001363673	84337		NM_032377	ENSG00000130165	ELOF1	ELF1	elongation factor 1	protein-coding
92180	chr17	7717021	7718080	+	0	NA	promoter-TSS (NM_020877)	promoter-TSS (NM_020877)	-194	NM_020877	146754		NM_020877	ENSG00000183914	DNAH2	DNAHC2|DNHD3|SPGF45	dynein axonemal heavy chain 2	protein-coding
159178	chr3	12831571	12832250	+	0	NA	intron (NM_012298, intron 12 of 12)	L2b|LINE|L2	8540	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
164786	chr3	69236801	69237330	+	0	NA	intron (NM_015123, intron 7 of 22)	MIR3|SINE|MIR	-114470	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
212446	chr7	128406911	128407730	+	0	NA	intron (NM_183243, intron 1 of 14)	intron (NM_183243, intron 1 of 14)	-1325	NM_001142574	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
77279	chr15	82045871	82046500	+	0	NA	promoter-TSS (NM_032246)	promoter-TSS (NM_032246)	-167	NM_032246	84206		NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
4839	chr1	23637021	23638100	+	0	NA	intron (NR_167910, intron 4 of 5)	intron (NR_167910, intron 4 of 5)	10226	NR_167904	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
119040	chr19	38975451	38976050	+	0	NA	promoter-TSS (NM_024907)	promoter-TSS (NM_024907)	-8	NR_104026	115290		NM_024907	ENSG00000269190	FBXO17	FBG4|FBX26|FBXO26|Fbx17	F-box protein 17	protein-coding
125772	chr2	23535921	23536180	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	150871	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
84999	chr16	31478751	31479950	+	0	NA	Intergenic	L2c|LINE|L2	-3773	NM_003041	6524		NM_003041	ENSG00000140675	SLC5A2	SGLT2	solute carrier family 5 member 2	protein-coding
209541	chr7	77198221	77198480	+	0	NA	intron (NM_006682, intron 1 of 1)	intron (NM_006682, intron 1 of 1)	1469	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
211282	chr7	103065721	103065980	+	0	NA	intron (NM_001111038, intron 1 of 18)	LTR41C|LTR|ERVL	8718	NM_145032	222235		NM_145032	ENSG00000161040	FBXL13	CFAP169|DRC6|Fbl13	F-box and leucine rich repeat protein 13	protein-coding
167667	chr3	129974371	129974780	+	0	NA	promoter-TSS (NM_007117)	promoter-TSS (NM_007117)	-145	NM_007117	7200		NM_007117	ENSG00000170893	TRH	Pro-TRH|TRF	thyrotropin releasing hormone	protein-coding
28263	chr10	45725871	45726030	+	0	NA	Intergenic	Intergenic	-1093	NM_001367393	253725		NM_015262	ENSG00000172661	WASHC2C	FAM21A|FAM21C|VPEF	WASH complex subunit 2C	protein-coding
55674	chr12	107393021	107393480	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	72662	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
222764	chr8	141535451	141535550	+	0	NA	Intergenic	Intergenic	-28270	NR_102363	389690		NM_207414	ENSG00000226807	MROH5	-	maestro heat like repeat family member 5 (gene/pseudogene)	protein-coding
75185	chr15	64768951	64769050	+	0	NA	intron (NM_194272, intron 1 of 7)	AluY|SINE|Alu	5743	NR_138363	348093		NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
211913	chr7	112411201	112411430	+	0	NA	Intergenic	Intergenic	-11829	NM_001197080	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
181841	chr5	52988751	52990280	+	0	NA	non-coding (NR_073103, exon 1 of 29)	non-coding (NR_073103, exon 1 of 29)	163	NM_002203	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
55715	chr12	108234201	108234400	+	0	NA	intron (NM_001304447, intron 8 of 9)	intron (NM_001304447, intron 8 of 9)	86362	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
215658	chr8	486571	486930	+	0	NA	Intergenic	Intergenic	58084	NM_001384899	157695		NM_175075	ENSG00000180190	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
99692	chr17	50782851	50783440	+	0	NA	Intergenic	Intergenic	14495	NR_107026	102466918		NR_107026	ENSG00000278672	MIR8059	hsa-mir-8059	microRNA 8059	ncRNA
154874	chr22	37137501	37138000	+	0	NA	intron (NM_000878, intron 5 of 9)	intron (NM_000878, intron 5 of 9)	12166	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
198035	chr6	90168821	90169080	+	0	NA	intron (NM_021813, intron 4 of 8)	MER119|DNA|hAT-Charlie	127893	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
218212	chr8	42019521	42019780	+	0	NA	intron (NM_001305878, intron 2 of 13)	MIRb|SINE|MIR	-32100	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
71012	chr14	104755321	104755580	+	0	NA	intron (NM_021709, intron 1 of 2)	intron (NM_021709, intron 1 of 2)	2303	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
27172	chr10	28536701	28537680	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	4072	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
204960	chr7	6371601	6371800	+	0	NA	Intergenic	AluJo|SINE|Alu	-2827	NM_006908	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
49379	chr12	22413871	22414030	+	0	NA	Intergenic	(AATCGTC)n|Simple_repeat|Simple_repeat	-79236	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
169469	chr3	169146971	169147130	+	0	NA	promoter-TSS (NM_001366468)	promoter-TSS (NM_001366468)	421	NM_001366474	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
69085	chr14	92104051	92104550	+	0	NA	intron (NR_028457, intron 1 of 11)	AluSx3|SINE|Alu	2282	NM_001127696	4287		NM_004993	ENSG00000066427	ATXN3	AT3|ATX3|JOS|MJD|MJD1|SCA3	ataxin 3	protein-coding
105027	chr17	82051401	82052800	+	0	NA	promoter-TSS (NM_002917)	promoter-TSS (NM_002917)	202	NM_212492	2873		NM_004127	ENSG00000169727	GPS1	COPS1|CSN1|SGN1	G protein pathway suppressor 1	protein-coding
235029	chrX	40041901	40042130	+	0	NA	Intergenic	LTR16B|LTR|ERVL	55943	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
45753	chr11	119205301	119207650	+	0	NA	exon (NM_005188, exon 1 of 16)	exon (NM_005188, exon 1 of 16)	136	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
191152	chr6	4772371	4772730	+	0	NA	intron (NM_001368125, intron 3 of 8)	intron (NM_001368125, intron 3 of 8)	-3854	NM_001368127	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
220834	chr8	102861201	102861400	+	0	NA	intron (NM_148174, intron 1 of 11)	AluSq10|SINE|Alu	2863	NM_001301668	51582		NM_015878	ENSG00000155096	AZIN1	AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
218983	chr8	61753351	61753680	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	38727	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
132612	chr2	108607021	108607280	+	0	NA	promoter-TSS (NM_001193482)	promoter-TSS (NM_001193482)	3	NM_001193482	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
199691	chr6	122849371	122849530	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	60192	NM_006714	10924		NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	sphingomyelin phosphodiesterase acid like 3A	protein-coding
21580	chr1	206478001	206478200	+	0	NA	intron (NM_001193322, intron 8 of 20)	intron (NM_001193322, intron 8 of 20)	3297	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
215908	chr8	8165471	8166280	+	0	NA	intron (NR_147089, intron 2 of 3)	intron (NR_147089, intron 2 of 3)	61628	NR_147089	105379219		NR_147089		FAM85B	lncRNA-HEIM	family with sequence similarity 85 member B	ncRNA
74844	chr15	63513301	63513730	+	0	NA	intron (NR_046342, intron 1 of 15)	AluJr|SINE|Alu	8922	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
165452	chr3	98569371	98569530	+	0	NA	Intergenic	L1PA6|LINE|L1	24161	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
123904	chr19	55343521	55343980	+	0	NA	exon (NM_032701, exon 5 of 9)	exon (NM_032701, exon 5 of 9)	3874	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
55927	chr12	109879771	109881350	+	0	NA	promoter-TSS (NM_016433)	promoter-TSS (NM_016433)	-19	NM_016433	51228		NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
8757	chr1	42714251	42714550	+	0	NA	Intergenic	AluJo|SINE|Alu	25836	NM_148960	149461		NM_148960	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
113951	chr19	10761271	10761430	+	0	NA	intron (NM_001005362, intron 2 of 19)	intron (NM_001005362, intron 2 of 19)	-18904	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
236558	chrX	72271251	72271880	+	0	NA	TTS (NM_001007)	TTS (NM_001007)	5683	NM_001007	6191		NM_001007	ENSG00000198034	RPS4X	CCG2|DXS306|RPS4|S4|SCAR|SCR10|eS4	ribosomal protein S4 X-linked	protein-coding
168285	chr3	141496321	141496730	+	0	NA	intron (NM_006506, intron 1 of 23)	L1PA5|LINE|L1	9498	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
14697	chr1	145920771	145921230	+	0	NA	TTS (NR_104034)	TTS (NR_104034)	1656	NR_104033	114814		NM_057163	ENSG00000293505	GNRHR2	GNRHR2P|GnRH-II-R	gonadotropin releasing hormone receptor 2 (pseudogene)	pseudo
146878	chr20	51502401	51502680	+	0	NA	intron (NM_173091, intron 3 of 9)	AluJo|SINE|Alu	40179	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
134856	chr2	148670621	148670880	+	0	NA	intron (NM_015630, intron 1 of 13)	AluJo|SINE|Alu	25999	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
48773	chr12	11629251	11629350	+	0	NA	Intergenic	AluY|SINE|Alu	-20374	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
58654	chr12	132522521	132523050	+	0	NA	intron (NM_001382740, intron 2 of 11)	intron (NM_001382740, intron 2 of 11)	17379	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
200356	chr6	134097121	134097380	+	0	NA	Intergenic	Intergenic	20430	NR_037938	387065		NR_037938		HMGA1P7	HMGA1L7	high mobility group AT-hook 1 pseudogene 7	pseudo
22007	chr1	209805671	209807050	+	0	NA	promoter-TSS (NM_006147)	promoter-TSS (NM_006147)	-185	NM_001206696	3664		NM_006147	ENSG00000117595	IRF6	LPS|OFC6|PIT|PPS|PPS1|VWS|VWS1	interferon regulatory factor 6	protein-coding
120810	chr19	45474801	45475300	+	0	NA	3' UTR (NM_001114171, exon 3 of 3)	3' UTR (NM_001114171, exon 3 of 3)	7054	NM_006732	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
79440	chr16	708721	709150	+	0	NA	Intergenic	Intergenic	-3134	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
235323	chrX	43436471	43436730	+	0	NA	Intergenic	Intergenic	-218307	NM_001270458	4128		NM_000240	ENSG00000189221	MAOA	BRNRS|MAO-A	monoamine oxidase A	protein-coding
67308	chr14	69609521	69609780	+	0	NA	Intergenic	AluSg|SINE|Alu	-1946	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
41970	chr11	67364251	67365480	+	0	NA	3' UTR (NM_001166212, exon 3 of 3)	3' UTR (NM_001166212, exon 3 of 3)	8733	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
15403	chr1	150237821	150238380	+	0	NA	Intergenic	AluSx|SINE|Alu	-1988	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
161215	chr3	39176901	39177180	+	0	NA	Intergenic	AluJo|SINE|Alu	15555	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
215371	chr7	157403621	157404200	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	-62321	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
113601	chr19	10290941	10291800	+	0	NA	intron (NM_003259, intron 2 of 10)	CpG-13669	1418	NM_003259	7087		NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	intercellular adhesion molecule 5	protein-coding
235247	chrX	41518121	41518780	+	0	NA	3' UTR (NM_003688, exon 27 of 27)	3' UTR (NM_003688, exon 27 of 27)	70990	NM_022567	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
105249	chr17	82423651	82424030	+	0	NA	intron (NM_001369488, intron 2 of 11)	AluSx1|SINE|Alu	-5254	NM_024648	79701		NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron dependent oxygenase domain containing 3	protein-coding
123654	chr19	54794521	54794780	+	0	NA	intron (NR_110738, intron 3 of 3)	L1PB4|LINE|L1	-8886	NM_001368253	112268354		NM_001368253		LOC112268354	-	killer cell immunoglobulin-like receptor 2DL4-like	protein-coding
80127	chr16	2046851	2048500	+	0	NA	promoter-TSS (NM_021055)	promoter-TSS (NM_021055)	159	NM_001318194	4913		NM_002528	ENSG00000065057	NTHL1	FAP3|NTH1|OCTS3|hNTH1	nth like DNA glycosylase 1	protein-coding
188450	chr5	154477371	154477530	+	0	NA	intron (NM_004821, intron 1 of 1)	intron (NM_004821, intron 1 of 1)	777	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
18426	chr1	161459171	161459700	+	0	NA	Intergenic	CpG	-46022	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
46199	chr11	123478301	123479430	+	0	NA	intron (NM_001367421, intron 2 of 20)	intron (NM_001367421, intron 2 of 20)	-31051	NM_001330396	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
113865	chr19	10657601	10658080	+	0	NA	intron (NM_153464, intron 1 of 17)	intron (NM_153464, intron 1 of 17)	3494	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
59568	chr13	27423871	27425300	+	0	NA	promoter-TSS (NM_002097)	promoter-TSS (NM_002097)	-34	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
63056	chr13	113112771	113113350	+	0	NA	intron (NR_051961, intron 2 of 6)	intron (NR_051961, intron 2 of 6)	7269	NM_019616	2155		NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
151392	chr21	45978001	45978600	+	0	NA	Intergenic	Intergenic	-3470	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
111312	chr19	3612821	3613630	+	0	NA	non-coding (NR_038865, exon 4 of 4)	non-coding (NR_038865, exon 4 of 4)	5978	NR_038865	404665		NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	ncRNA
135044	chr2	156333901	156335100	+	0	NA	Intergenic	CpG	-1779	NM_173173	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
177064	chr4	108037851	108038150	+	0	NA	Intergenic	Intergenic	33336	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
122537	chr19	49636551	49637150	+	0	NA	exon (NM_006270, exon 3 of 6)	exon (NM_006270, exon 3 of 6)	3293	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
193056	chr6	28648321	28648850	+	0	NA	non-coding (NR_135285, exon 3 of 3)	non-coding (NR_135285, exon 3 of 3)	5890	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
204648	chr7	5423071	5423600	+	0	NA	intron (NM_001080495, intron 1 of 29)	CpG-25497	211	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
128115	chr2	48292521	48292780	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-21649	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
67742	chr14	73633371	73634600	+	0	NA	Intergenic	CpG	-11001	NM_031427	83544		NM_031427	ENSG00000119661	DNAL1	C14orf168|CILD16|LC1	dynein axonemal light chain 1	protein-coding
123753	chr19	55079151	55079250	+	0	NA	intron (NM_133180, intron 4 of 19)	intron (NM_133180, intron 4 of 19)	-1192	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
194598	chr6	33452971	33453600	+	0	NA	3' UTR (NM_001130066, exon 18 of 18)	3' UTR (NM_001130066, exon 18 of 18)	-1291	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
170507	chr3	186272551	186272650	+	0	NA	intron (NM_001346, intron 10 of 24)	intron (NM_001346, intron 10 of 24)	89634	NM_001080745	1608		NM_001346	ENSG00000058866	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase gamma	protein-coding
121185	chr19	46495071	46495230	+	0	NA	exon (NM_020709, exon 1 of 1)	exon (NM_020709, exon 1 of 1)	717	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
68521	chr14	88798151	88798450	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-5347	NM_001385117	161436		NM_183387	ENSG00000165521	EML5	EMAP-2|EMAP-5|FAP16	EMAP like 5	protein-coding
157258	chr22	43862051	43862680	+	0	NA	exon (NM_014351, exon 1 of 7)	exon (NM_014351, exon 1 of 7)	148	NM_014351	25830		NM_014351	ENSG00000130540	SULT4A1	BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1	sulfotransferase family 4A member 1	protein-coding
124233	chr19	57321971	57322430	+	0	NA	intron (NM_213598, intron 1 of 3)	intron (NM_213598, intron 1 of 3)	1728	NM_213598	125919		NM_213598	ENSG00000178229	ZNF543	-	zinc finger protein 543	protein-coding
65650	chr14	52327351	52328080	+	0	NA	3' UTR (NM_000956, exon 2 of 2)	3' UTR (NM_000956, exon 2 of 2)	13403	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
118382	chr19	35726601	35726800	+	0	NA	intron (NM_014727, intron 14 of 36)	intron (NM_014727, intron 14 of 36)	8697	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
59739	chr13	29919151	29919450	+	0	NA	intron (NR_047501, intron 1 of 1)	intron (NR_047501, intron 1 of 1)	7351	NR_047501	100861573		NR_047501	ENSG00000224405	LINC00572	-	long intergenic non-protein coding RNA 572	ncRNA
81277	chr16	4650071	4650950	+	0	NA	intron (NM_001142291, intron 2 of 15)	intron (NM_001142291, intron 2 of 15)	-20808	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
34527	chr10	132786671	132786830	+	0	NA	promoter-TSS (NM_177400)	promoter-TSS (NM_177400)	-603	NM_177400	84504		NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B|SPAX8	NK6 homeobox 2	protein-coding
9890	chr1	54358571	54358730	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	47744	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
197471	chr6	75286301	75286550	+	0	NA	intron (NR_040081, intron 1 of 2)	intron (NR_040081, intron 1 of 2)	1411	NR_040081	100506804		NR_040081	ENSG00000225793	TMEM30A-DT	-	TMEM30A divergent transcript	ncRNA
51374	chr12	51848671	51849230	+	0	NA	promoter-TSS (NM_001384995)	promoter-TSS (NM_001384995)	-232	NM_001384995	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
114883	chr19	13885371	13885530	+	0	NA	intron (NM_001345846, intron 6 of 7)	intron (NM_001345846, intron 6 of 7)	8201	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
110314	chr19	1846621	1847000	+	0	NA	intron (NM_020695, intron 1 of 15)	AluJo|SINE|Alu	1673	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
108860	chr18	79371651	79372000	+	0	NA	intron (NM_198531, intron 26 of 29)	intron (NM_198531, intron 26 of 29)	-24105	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
150394	chr21	42300271	42300630	+	0	NA	Intergenic	Intergenic	14959	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
3827	chr1	16888901	16890150	+	0	NA	promoter-TSS (NR_135056)	promoter-TSS (NR_135056)	-47	NR_135057	105376805		NR_135056	ENSG00000238142	LOC105376805	-	uncharacterized LOC105376805	ncRNA
149165	chr21	17814451	17814980	+	0	NA	intron (NM_017447, intron 2 of 4)	MSTA|LTR|ERVL-MaLR	4641	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
39299	chr11	58596051	58596550	+	0	NA	intron (NM_053023, intron 2 of 10)	Tigger2|DNA|TcMar-Tigger	17186	NR_024091	386607		NM_170768		ZFP91-CNTF	ZFP91|ZNF757|Zfp-91	ZFP91-CNTF readthrough (NMD candidate)	ncRNA
183349	chr5	76849721	76850580	+	0	NA	5' UTR (NM_130772, exon 1 of 5)	5' UTR (NM_130772, exon 1 of 5)	136	NM_130772	170591		NM_130772	ENSG00000171643	S100Z	Gm625|S100-zeta	S100 calcium binding protein Z	protein-coding
237363	chrX	118847621	118847880	+	0	NA	intron (NR_110393, intron 5 of 6)	intron (NR_110393, intron 5 of 6)	8194	NR_110393	101928287		NR_110393	ENSG00000203650	LINC01285	-	long intergenic non-protein coding RNA 1285	ncRNA
49671	chr12	29404251	29404350	+	0	NA	intron (NR_073172, intron 1 of 1)	intron (NR_073172, intron 1 of 1)	15006	NR_073170	101055625		NR_073170	ENSG00000257599	OVCH1-AS1	-	OVCH1 antisense RNA 1	ncRNA
17441	chr1	156677921	156678580	+	0	NA	promoter-TSS (NM_006617)	promoter-TSS (NM_006617)	-843	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
105138	chr17	82237201	82237940	+	0	NA	TTS (NR_106845)	TTS (NR_106845)	902	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
127312	chr2	38775471	38776080	+	0	NA	Intergenic	AluSc|SINE|Alu	-2435	NM_024775	79833		NM_024775	ENSG00000152147	GEMIN6	-	gem nuclear organelle associated protein 6	protein-coding
214515	chr7	150481001	150482150	+	0	NA	Intergenic	Intergenic	30945	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
83839	chr16	28867701	28867980	+	0	NA	intron (NM_001145812, intron 3 of 9)	AluJo|SINE|Alu	3847	NM_015503	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
82359	chr16	15983221	15983480	+	0	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	33734	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
42840	chr11	73137201	73138000	+	0	NA	intron (NM_014824, intron 2 of 19)	intron (NM_014824, intron 2 of 19)	4718	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
175024	chr4	52657621	52658200	+	0	NA	intron (NM_022832, intron 1 of 8)	intron (NM_022832, intron 1 of 8)	-1371	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
2589	chr1	9833971	9834130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9524	NM_014944	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
7573	chr1	35170251	35171380	+	0	NA	Intergenic	AluSx|SINE|Alu	22330	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
233935	chrX	2362321	2362580	+	0	NA	intron (NM_145177, intron 3 of 6)	AluSg|SINE|Alu	138089	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
135407	chr2	160969921	160970380	+	0	NA	Intergenic	Intergenic	-166805	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
86693	chr16	67528171	67529300	+	0	NA	promoter-TSS (NM_001193522)	promoter-TSS (NM_001193522)	10	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
205409	chr7	16563251	16563680	+	0	NA	intron (NM_001195280, intron 5 of 8)	intron (NM_001195280, intron 5 of 8)	36640	NM_001195280	100506049		NM_001195280	ENSG00000205858	LRRC72	CFAP279|FAP279	leucine rich repeat containing 72	protein-coding
117185	chr19	19360251	19360350	+	0	NA	Intergenic	L1MB5|LINE|L1	-25543	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
100165	chr17	58621121	58621980	+	0	NA	intron (NM_198393, intron 5 of 32)	intron (NM_198393, intron 5 of 32)	70495	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
66033	chr14	58279801	58280480	+	0	NA	intron (NR_029435, intron 2 of 3)	AluSx1|SINE|Alu	-7893	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
51	chr1	206271	206930	+	0	NA	promoter-TSS (NR_026823)	promoter-TSS (NR_026823)	-3	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
76237	chr15	73966601	73966930	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	25530	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
156739	chr22	41820801	41821200	+	0	NA	intron (NM_024821, intron 6 of 6)	L2a|LINE|L2	-12105	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
60331	chr13	40670001	40670400	+	0	NA	Intergenic	Intergenic	-3559	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
93018	chr17	17234801	17235930	+	0	NA	intron (NM_144606, intron 1 of 7)	AluJb|SINE|Alu	1803	NM_001353231	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
69959	chr14	99689421	99690000	+	0	NA	intron (NM_006668, intron 1 of 14)	L2a|LINE|L2	5412	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
181368	chr5	40590771	40591130	+	0	NA	Intergenic	L1PA15|LINE|L1	-88965	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
11202	chr1	88722571	88722730	+	0	NA	intron (NM_001320708, intron 1 of 20)	AluJr|SINE|Alu	-37446	NR_110682	101927891		NR_110682	ENSG00000237505	PKN2-AS1	-	PKN2 antisense RNA 1	ncRNA
124421	chr19	58456221	58456480	+	0	NA	exon (NM_207395, exon 4 of 4)	exon (NM_207395, exon 4 of 4)	4728	NM_207395	388569		NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
67546	chr14	71169101	71169380	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-151236	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
63744	chr14	21226101	21227600	+	0	NA	intron (NM_001077443, intron 4 of 7)	AluSx|SINE|Alu	-19950	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
202807	chr6	159252921	159253200	+	0	NA	intron (NM_032532, intron 17 of 22)	intron (NM_032532, intron 17 of 22)	-83053	NR_121668	101929122		NR_121668		FNDC1-AS1	-	FNDC1 antisense RNA 1	ncRNA
132809	chr2	110481151	110481480	+	0	NA	Intergenic	Intergenic	-8240	NR_038099	100288695		NM_001205288	ENSG00000256671	LIMS4	LIMS3L	LIM zinc finger domain containing 4	protein-coding
41734	chr11	66669951	66670250	+	0	NA	intron (NM_031492, intron 2 of 3)	intron (NM_031492, intron 2 of 3)	7787	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
996	chr1	1843451	1844030	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	47347	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
186539	chr5	138446871	138447230	+	0	NA	TTS (NR_073449)	TTS (NR_073449)	7993	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
156865	chr22	42077451	42077830	+	0	NA	exon (NM_001002034, exon 3 of 3)	exon (NM_001002034, exon 3 of 3)	-2051	NR_146715	91689		NM_033318	ENSG00000183172	SMDT1	C22orf32|DDDD|EMRE	single-pass membrane protein with aspartate rich tail 1	protein-coding
162917	chr3	49415671	49417680	+	0	NA	TTS (NM_000481)	TTS (NM_000481)	4469	NM_022171	6988		NM_022171	ENSG00000145022	TCTA	-	T cell leukemia translocation altered	protein-coding
98983	chr17	48736001	48736430	+	0	NA	Intergenic	Intergenic	-7465	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
204305	chr7	2689971	2690480	+	0	NA	intron (NM_001321766, intron 1 of 6)	(GA)n|Simple_repeat|Simple_repeat	2023	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
229823	chr9	125710351	125710450	+	0	NA	Intergenic	Intergenic	-3166	NM_001006619	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
207264	chr7	43925951	43927180	+	0	NA	promoter-TSS (NM_001290076)	promoter-TSS (NM_001290076)	129	NM_015983	51619		NM_015983	ENSG00000078967	UBE2D4	HBUCE1	ubiquitin conjugating enzyme E2 D4 (putative)	protein-coding
202586	chr6	158698801	158699550	+	0	NA	intron (NM_001318745, intron 3 of 14)	intron (NM_001318745, intron 3 of 14)	35772	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
210284	chr7	99422251	99422550	+	0	NA	intron (NM_015545, intron 7 of 7)	intron (NM_015545, intron 7 of 7)	13228	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
29859	chr10	72358421	72358980	+	0	NA	Intergenic	LTR107_Mam|LTR|LTR	-3781	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
101706	chr17	68497921	68498580	+	0	NA	intron (NM_001278433, intron 1 of 10)	intron (NM_001278433, intron 1 of 10)	-13530	NM_212471	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
149504	chr21	32614151	32614500	+	0	NA	Intergenic	AluSp|SINE|Alu	-1454	NM_001350335	56683		NM_017835	ENSG00000159079	CFAP298	C21orf48|C21orf59|CILD26|DNAAF16|FBB18|Kur	cilia and flagella associated protein 298	protein-coding
50523	chr12	47835801	47836230	+	0	NA	Intergenic	Intergenic	-16112	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
102169	chr17	75135971	75136130	+	0	NA	non-coding (NR_109933, exon 5 of 5)	non-coding (NR_109933, exon 5 of 5)	-4255	NM_001252377	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
10864	chr1	77978801	77980730	+	0	NA	promoter-TSS (NR_146540)	promoter-TSS (NR_146540)	-419	NM_001317099	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
232167	chr9	134163501	134166100	+	0	NA	promoter-TSS (NR_023344)	promoter-TSS (NR_023344)	-236	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
194762	chr6	34066771	34067230	+	0	NA	intron (NM_001282847, intron 2 of 9)	(CTGC)n|Simple_repeat|Simple_repeat	38967	NM_001256813	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
65417	chr14	50828701	50829250	+	0	NA	intron (NM_020921, intron 2 of 30)	intron (NM_020921, intron 2 of 30)	2146	NM_182946	51199		NM_016350	ENSG00000100503	NIN	SCKL7	ninein	protein-coding
91780	chr17	7007401	7007600	+	0	NA	intron (NM_000697, intron 11 of 13)	intron (NM_000697, intron 11 of 13)	4834	NR_040089	100506713		NR_040089	ENSG00000215067	ALOX12-AS1	-	ALOX12 antisense RNA 1	ncRNA
6599	chr1	28776521	28777330	+	0	NA	Intergenic	Intergenic	-35245	NM_000911	4985		NM_000911	ENSG00000116329	OPRD1	DOP|DOR|DOR1|OPRD	opioid receptor delta 1	protein-coding
221832	chr8	128095571	128096000	+	0	NA	intron (NR_003367, intron 6 of 8)	intron (NR_003367, intron 6 of 8)	46633	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
61350	chr13	50911201	50912480	+	0	NA	intron (NM_001142279, intron 1 of 9)	intron (NM_001142279, intron 1 of 9)	-1128	NR_046552	100874255		NR_046552		RNASEH2B-AS1	-	RNASEH2B antisense RNA 1	ncRNA
38006	chr11	35077771	35078930	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	59682	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
190154	chr5	178119001	178119780	+	0	NA	intron (NM_015111, intron 1 of 4)	intron (NM_015111, intron 1 of 4)	5858	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
217711	chr8	30141321	30142250	+	0	NA	intron (NM_001100916, intron 1 of 2)	intron (NM_001100916, intron 1 of 2)	2880	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
181396	chr5	40685271	40686050	+	0	NA	intron (NM_000958, intron 2 of 2)	intron (NM_000958, intron 2 of 2)	5745	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
130805	chr2	86958521	86958780	+	0	NA	intron (NM_001382344, intron 6 of 22)	intron (NM_001382344, intron 6 of 22)	16532	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
164582	chr3	65732371	65732530	+	0	NA	intron (NM_001033057, intron 1 of 22)	intron (NM_001033057, intron 1 of 22)	-161366	NR_046575	100873983		NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
35023	chr11	557091	557380	+	0	NA	intron (NM_173573, intron 7 of 13).2	intron (NM_173573, intron 7 of 13).2	-2027	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
137962	chr2	201177411	201177980	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-5203	NM_032976	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
175942	chr4	80500501	80500990	+	0	NA	intron (NM_001206997, intron 2 of 6)	intron (NM_001206997, intron 2 of 6)	165015	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
70382	chr14	101928071	101928230	+	0	NA	TTS (NM_001161725)	TTS (NM_001161725)	-36423	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
125576	chr2	16625321	16625780	+	0	NA	intron (NM_030797, intron 1 of 11)	intron (NM_030797, intron 1 of 11)	40284	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
238606	chrX	153929571	153930600	+	0	NA	exon (NM_001256119, exon 7 of 7)	exon (NM_001256119, exon 7 of 7)	-3821	NM_001666	393		NM_001666	ENSG00000089820	ARHGAP4	C1|RGC1|RhoGAP4|SrGAP4|p115	Rho GTPase activating protein 4	protein-coding
192980	chr6	28053821	28054280	+	0	NA	Intergenic	Intergenic	-19266	NM_001355425	442179		NM_001355425	ENSG00000220721	OR1F12P	OR1F12|OR1F12Q|OR6-12|hs6M1-35P	olfactory receptor family 1 subfamily F member 12, pseudogene	pseudo
18847	chr1	167712551	167712650	+	0	NA	Intergenic	HAL1b|LINE|L1	-9382	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
85268	chr16	48556601	48557430	+	0	NA	intron (NM_153029, intron 2 of 6)	intron (NM_153029, intron 2 of 6)	53165	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
227913	chr9	94172421	94173230	+	0	NA	Intergenic	Intergenic	-3132	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
138100	chr2	202268421	202268830	+	0	NA	intron (NM_015934, intron 1 of 14)	AluSp|SINE|Alu	2862	NM_015934	51602		NM_015934	ENSG00000055044	NOP58	HSPC120|NOP5|NOP5/NOP58	NOP58 ribonucleoprotein	protein-coding
130661	chr2	86197871	86198450	+	0	NA	Intergenic	AluJr|SINE|Alu	-1273	NM_001363782	51318		NM_016622	ENSG00000132313	MRPL35	L35mt|MRP-L35|bL35m	mitochondrial ribosomal protein L35	protein-coding
36757	chr11	9363951	9365100	+	0	NA	Intergenic	CpG	-20127	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
146600	chr20	50122651	50122950	+	0	NA	TTS (NR_027889)	TTS (NR_027889)	-6843	NM_022442	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
210330	chr7	99496921	99497250	+	0	NA	intron (NM_001345967, intron 1 of 1)	MER44A|DNA|TcMar-Tigger	3196	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
220050	chr8	93738471	93738980	+	0	NA	intron (NM_203390, intron 1 of 2)	AluJb|SINE|Alu	-1386	NR_027259	55472		NM_018608	ENSG00000279331	RBM12B-AS1	C8orf39|PRO1905	RBM12B antisense RNA 1	ncRNA
100504	chr17	62041521	62041780	+	0	NA	intron (NM_005121, intron 3 of 29)	AluJo|SINE|Alu	23628	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
165627	chr3	101722301	101722750	+	0	NA	Intergenic	Intergenic	-2089	NM_024548	79598		NM_024548	ENSG00000182504	CEP97	2810403B08Rik|LRRIQ2	centrosomal protein 97	protein-coding
156951	chr22	42344671	42345050	+	0	NA	Intergenic	Intergenic	24348	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
78694	chr15	96345651	96345980	+	0	NA	Intergenic	CpG	12050	NM_001145157	7026		NM_021005	ENSG00000185551	NR2F2	ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SRXX5|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding
112206	chr19	5688501	5688730	+	0	NA	TTS (NM_198708)	TTS (NM_198708)	-1680	NM_033643	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
227282	chr9	89385521	89385780	+	0	NA	intron (NM_001371200, intron 15 of 20)	intron (NM_001371200, intron 15 of 20)	66799	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
74130	chr15	55230171	55230930	+	0	NA	intron (NM_183236, intron 3 of 6)	intron (NM_183236, intron 3 of 6)	-33609	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
49520	chr12	25388201	25389100	+	0	NA	Intergenic	Intergenic	-137721	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
234016	chrX	3705121	3706080	+	0	NA	intron (NM_005044, intron 1 of 8)	intron (NM_005044, intron 1 of 8)	8049	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
238956	chrX	155069271	155069430	+	0	NA	intron (NM_001018025, intron 1 of 4)	MIRc|SINE|MIR	1786	NM_001018025	4515		NM_014221	ENSG00000214827	MTCP1	P13MTCP1|TCL1C|p8MTCP1	mature T cell proliferation 1	protein-coding
183043	chr5	73380021	73380680	+	0	NA	Intergenic	CpG	42444	NR_146627	105379033		NR_146627		LINC02230	-	long intergenic non-protein coding RNA 2230	ncRNA
237069	chrX	103607671	103608650	+	0	NA	intron (NM_001006933, intron 1 of 2)	CpG	197	NM_032926	85012		NM_032926	ENSG00000196507	TCEAL3	WEX8	transcription elongation factor A like 3	protein-coding
107067	chr18	32919951	32920130	+	0	NA	Intergenic	Intergenic	-147017	NM_020805	57565		NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding
110087	chr19	1520451	1520750	+	0	NA	Intergenic	Intergenic	-3477	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
146950	chr20	52190451	52190900	+	0	NA	intron (NM_199427, intron 1 of 8)	intron (NM_199427, intron 1 of 8)	1104	NM_199426	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
219481	chr8	73749221	73749580	+	0	NA	Intergenic	AluSg|SINE|Alu	-1692	NM_001164384	27067		NM_014393	ENSG00000040341	STAU2	39K2|39K3	staufen double-stranded RNA binding protein 2	protein-coding
156601	chr22	41541301	41542080	+	0	NA	intron (NM_138338, intron 2 of 6)	intron (NM_138338, intron 2 of 6)	2780	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
3525	chr1	16069471	16069630	+	0	NA	intron (NM_182623, intron 1 of 6)	intron (NM_182623, intron 1 of 6)	4101	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
52082	chr12	54053501	54055230	+	0	NA	intron (NM_153633, intron 1 of 1)	intron (NM_153633, intron 1 of 1)	530	NM_153633	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
23174	chr1	226797771	226797930	+	0	NA	Intergenic	Intergenic	-58675	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
97415	chr17	43400671	43400830	+	0	NA	3' UTR (NM_001661, exon 2 of 2)	3' UTR (NM_001661, exon 2 of 2)	1757	NM_001661	379		NM_001661	ENSG00000175906	ARL4D	ARF4L	ADP ribosylation factor like GTPase 4D	protein-coding
70518	chr14	102315701	102315900	+	0	NA	Intergenic	AluSz|SINE|Alu	-1706	NM_001385074	55778		NM_018335	ENSG00000022976	ZNF839	C14orf131	zinc finger protein 839	protein-coding
128653	chr2	61439321	61440230	+	0	NA	intron (NM_014709, intron 1 of 79)	intron (NM_014709, intron 1 of 79)	-22398	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
134580	chr2	144241921	144242180	+	0	NA	intron (NM_001354354, intron 1 of 12)	intron (NM_001354354, intron 1 of 12)	2839	NM_001354358	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
148888	chr21	8458451	8458800	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	17479	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
167960	chr3	136664251	136664550	+	0	NA	intron (NM_005862, intron 1 of 33)	intron (NM_005862, intron 1 of 33)	87978	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
14898	chr1	147072571	147073550	+	0	NA	Intergenic	Intergenic	11696	NR_121645	101447996		NR_121645	ENSG00000286172	RNVU1-8	RNU1-145|vU1.8	RNA, variant U1 small nuclear 8	snRNA
166275	chr3	112483851	112484150	+	0	NA	intron (NM_001085357, intron 1 of 3)	intron (NM_001085357, intron 1 of 3)	15472	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
80621	chr16	2973771	2974300	+	0	NA	TTS (NM_001284512)	TTS (NM_001284512)	4687	NM_001284511	124222		NM_152341	ENSG00000162073	PAQR4	-	progestin and adipoQ receptor family member 4	protein-coding
96907	chr17	42129151	42129630	+	0	NA	intron (NM_004583, intron 2 of 5)	intron (NM_004583, intron 2 of 5)	6586	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
212497	chr7	128608651	128609350	+	0	NA	Intergenic	Intergenic	-32241	NR_024368	402483		NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
97632	chr17	44185201	44185480	+	0	NA	intron (NR_049729, intron 1 of 3)	L1ME3A|LINE|L1	1377	NR_049730	339201		NM_178542	ENSG00000267080	ASB16-AS1	C17orf65	ASB16 antisense RNA 1	ncRNA
189098	chr5	170302521	170303980	+	0	NA	Intergenic	Intergenic	-5473	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
145803	chr20	45421301	45421850	+	0	NA	exon (NM_001184728, exon 8 of 11)	exon (NM_001184728, exon 8 of 11)	-3935	NR_106870	102465487		NR_106870	ENSG00000273555	MIR6812	hsa-mir-6812	microRNA 6812	ncRNA
211564	chr7	105641321	105641580	+	0	NA	intron (NM_001385596, intron 5 of 11)	intron (NM_001385596, intron 5 of 11)	37705	NM_001318229	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
36277	chr11	3799901	3800250	+	0	NA	intron (NR_027017, intron 1 of 7)	intron (NR_027017, intron 1 of 7)	2177	NM_001346401	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
230235	chr9	127875651	127876700	+	0	NA	intron (NM_001318121, intron 1 of 6)	L2c|LINE|L2	1500	NM_000476	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
209416	chr7	76352851	76353150	+	0	NA	intron (NM_012479, intron 1 of 1)	intron (NM_012479, intron 1 of 1)	5991	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
12312	chr1	100930371	100931330	+	0	NA	intron (NM_133496, intron 8 of 10)	intron (NM_133496, intron 8 of 10)	34760	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
225524	chr9	35737271	35737430	+	0	NA	TTS (NM_006368)	TTS (NM_006368)	4428	NR_106912	102466201		NR_106912	ENSG00000273945	MIR6853	hsa-mir-6853	microRNA 6853	ncRNA
53240	chr12	62468851	62469350	+	0	NA	intron (NM_015026, intron 1 of 34)	AluJo|SINE|Alu	2274	NM_015026	23041		NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
181431	chr5	40828971	40829300	+	0	NA	3' UTR (NM_000997, exon 4 of 4)	3' UTR (NM_000997, exon 4 of 4)	3600	NR_002583	619564		NR_002583	ENSG00000212296	SNORD72	HBII-240	small nucleolar RNA, C/D box 72	snoRNA
121202	chr19	46600171	46602190	+	0	NA	promoter-TSS (NM_001329922)	promoter-TSS (NM_001329922)	20	NM_001363873	100506012		NM_001205281	ENSG00000291145	PPP5D1P	PPP5D1	PPP5 tetratricopeptide repeat domain containing 1, pseudogene	pseudo
134669	chr2	144469201	144469400	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-50314	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
128903	chr2	64202451	64202980	+	0	NA	intron (NR_033837, intron 2 of 5)	intron (NR_033837, intron 2 of 5)	2770	NR_033837	150992		NR_033837	ENSG00000230923	LINC00309	NCRNA00309	long intergenic non-protein coding RNA 309	ncRNA
204667	chr7	5463451	5463550	+	0	NA	intron (NM_001363441, intron 4 of 4)	AluJr|SINE|Alu	32417	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
237110	chrX	104195271	104196000	+	0	NA	3' UTR (NM_207318, exon 6 of 6)	3' UTR (NM_207318, exon 6 of 6)	29182	NM_207318	139231		NM_207318	ENSG00000123575	FAM199X	CXorf39	family with sequence similarity 199, X-linked	protein-coding
14191	chr1	122653851	122653950	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1134788	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
215899	chr8	8138121	8138380	+	0	NA	intron (NR_147089, intron 2 of 3)	MSTA|LTR|ERVL-MaLR	-49161	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
125988	chr2	25293121	25293380	+	0	NA	intron (NR_135490, intron 3 of 23)	intron (NR_135490, intron 3 of 23)	35471	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
3577	chr1	16204851	16205400	+	0	NA	exon (NM_153213, exon 11 of 16)	exon (NM_153213, exon 11 of 16)	7527	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
12588	chr1	108962821	108964330	+	0	NA	promoter-TSS (NM_001278202)	promoter-TSS (NM_001278202)	-91	NM_001377461	23155		NM_015127	ENSG00000121940	CLCC1	MCLC|RP32	chloride channel CLIC like 1	protein-coding
141818	chr20	351971	352480	+	0	NA	intron (NM_001323681, intron 3 of 3)	intron (NM_001323681, intron 3 of 3)	4320	NM_001323685	80023		NM_024958	ENSG00000125841	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
137616	chr2	197304301	197305300	+	0	NA	intron (NM_153697, intron 1 of 9)	MER117|DNA|hAT-Charlie	-2281	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
87685	chr16	74654051	74654550	+	0	NA	intron (NM_001370540, intron 3 of 13)	L1M4|LINE|L1	12577	NM_018124	55159		NM_018124	ENSG00000168411	RFWD3	FANCW|RNF201	ring finger and WD repeat domain 3	protein-coding
220444	chr8	100314651	100315350	+	0	NA	intron (NM_001280539, intron 1 of 10)	L2c|LINE|L2	-5047	NM_183419	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
27636	chr10	32952771	32952930	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	5044	NM_133376	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
13547	chr1	115107471	115107630	+	0	NA	Intergenic	Intergenic	-18047	NM_005725	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
185100	chr5	119235651	119235750	+	0	NA	intron (NM_001290321, intron 39 of 43)	HAL1ME|LINE|L1	-33059	NM_001286815	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
7480	chr1	33147301	33147500	+	0	NA	exon (NM_018207, exon 5 of 5)	exon (NM_018207, exon 5 of 5)	29150	NM_001330483	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
235268	chrX	41796071	41796230	+	0	NA	intron (NM_001126055, intron 2 of 24)	MIRc|SINE|MIR	71969	NM_080817	27197		NM_080817	ENSG00000171657	GPR82	-	G protein-coupled receptor 82	protein-coding
229241	chr9	114989701	114990450	+	0	NA	Intergenic	Intergenic	-59480	NM_001252290	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
183376	chr5	77490721	77491280	+	0	NA	intron (NM_018268, intron 1 of 12)	intron (NM_018268, intron 1 of 12)	1316	NM_018268	55255		NM_018268	ENSG00000164253	WDR41	MSTP048	WD repeat domain 41	protein-coding
207786	chr7	50226451	50227150	+	0	NA	Intergenic	Intergenic	-77264	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
122425	chr19	49462751	49463950	+	0	NA	intron (NM_001145396, intron 7 of 15)	MSR1|Satellite|Satellite	10125	NM_001145396	126133		NM_153329	ENSG00000161618	ALDH16A1	-	aldehyde dehydrogenase 16 family member A1	protein-coding
210766	chr7	100691171	100692550	+	0	NA	intron (NR_164719, intron 1 of 26)	intron (NR_164719, intron 1 of 26)	2390	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
173111	chr4	6470771	6471330	+	0	NA	intron (NM_001206995, intron 2 of 9)	CpG	1564	NM_020416	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
128754	chr2	62197301	62198280	+	0	NA	intron (NM_006577, intron 1 of 1)	intron (NM_006577, intron 1 of 1)	1675	NM_006577	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
118701	chr19	38212101	38212630	+	0	NA	exon (NM_004647, exon 10 of 11)	exon (NM_004647, exon 10 of 11)	11857	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
20287	chr1	197100671	197100900	+	0	NA	exon (NM_018136, exon 18 of 28)	exon (NM_018136, exon 18 of 28)	-33525	NM_001994	2165		NM_001994	ENSG00000143278	F13B	FXIIIB	coagulation factor XIII B chain	protein-coding
202978	chr6	161275051	161275350	+	0	NA	Intergenic	Intergenic	-1139	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
7823	chr1	36301871	36302030	+	0	NA	intron (NM_001321471, intron 12 of 12)	intron (NM_001321471, intron 12 of 12)	-4418	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
217442	chr8	28601101	28601300	+	0	NA	Intergenic	Intergenic	-96018	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	ncRNA
116372	chr19	17931601	17931850	+	0	NA	Intergenic	AluJr|SINE|Alu	-1290	NM_001136203	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
102010	chr17	74784351	74784650	+	0	NA	intron (NM_017728, intron 2 of 9)	intron (NM_017728, intron 2 of 9)	8001	NM_017728	54868		NM_017728	ENSG00000109066	TMEM104	SLC38A12	transmembrane protein 104	protein-coding
41472	chr11	66136871	66137030	+	0	NA	intron (NM_018026, intron 1 of 23)	L1M5|LINE|L1	66678	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
212511	chr7	128701321	128701530	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-7636	NR_104243	84691		NM_032599	ENSG00000135248	GARIN1B	FAM137A|FAM71F1|GARI-L1|GARIL1|NYD-SP18	golgi associated RAB2 interactor 1B	protein-coding
168102	chr3	138479471	138479630	+	0	NA	non-coding (NR_136409, exon 23 of 23)	non-coding (NR_136409, exon 23 of 23)	44934	NM_001322834	83850		NM_031913	ENSG00000158220	ESYT3	CHR3SYT|E-Syt3|FAM62C	extended synaptotagmin 3	protein-coding
79942	chr16	1760301	1760980	+	0	NA	intron (NM_001318852, intron 12 of 31)	intron (NM_001318852, intron 12 of 31)	11069	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
212836	chr7	130527751	130528100	+	0	NA	intron (NM_012133, intron 20 of 23)	intron (NM_012133, intron 20 of 23)	-15528	NR_024086	53844		NR_024086		COPG2IT1	CIT1|COPG2AS|DKFZP761N09121|NCRNA00170	COPG2 imprinted transcript 1	ncRNA
235296	chrX	42430421	42430680	+	0	NA	Intergenic	L1PA2|LINE|L1	347613	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
96336	chr17	40053171	40053330	+	0	NA	intron (NM_014815, intron 3 of 25)	intron (NM_014815, intron 3 of 25)	1158	NM_014815	9862		NM_014815	ENSG00000008838	MED24	ARC100|CRSP100|CRSP4|DRIP100|MED5|THRAP4|TRAP100	mediator complex subunit 24	protein-coding
170550	chr3	186782571	186783700	+	0	NA	promoter-TSS (NM_001967)	promoter-TSS (NM_001967)	-442	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
74721	chr15	63166371	63166600	+	0	NA	Intergenic	Intergenic	-9008	NM_015920	51065		NM_015920	ENSG00000185088	RPS27L	-	ribosomal protein S27 like	protein-coding
111737	chr19	4357501	4357700	+	0	NA	intron (NM_032868, intron 10 of 11)	intron (NM_032868, intron 10 of 11)	14038	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
57799	chr12	123106651	123107430	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-1524	NM_001384660	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
56262	chr12	112008871	112009430	+	0	NA	intron (NM_138341, intron 1 of 9)	L3|LINE|CR1	4015	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
168474	chr3	143165671	143165830	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	45979	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
226771	chr9	76466101	76466580	+	0	NA	intron (NM_001490, intron 2 of 3)	AluJo|SINE|Alu	7158	NM_001490	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
120429	chr19	44071721	44072850	+	0	NA	5' UTR (NM_001037813, exon 1 of 5)	5' UTR (NM_001037813, exon 1 of 5)	126	NM_001037813	342909		NM_001037813	ENSG00000186026	ZNF284	ZNF284L	zinc finger protein 284	protein-coding
49869	chr12	37883051	37883150	+	0	NA	Intergenic	AluY|SINE|Alu	-433674	NM_001308340	144245		NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10 alpha-1,2-glucosyltransferase B	protein-coding
210798	chr7	100855601	100855800	+	0	NA	intron (NM_001267812, intron 3 of 13)	intron (NM_001267812, intron 3 of 13)	2981	NM_001267812	56996		NM_020246	ENSG00000146828	SLC12A9	CCC6|CIP1|WO3.3|hCCC6	solute carrier family 12 member 9	protein-coding
211105	chr7	102507321	102508250	+	0	NA	intron (NM_001367767, intron 4 of 20)	intron (NM_001367767, intron 4 of 20)	9992	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
34170	chr10	128088301	128088500	+	0	NA	Intergenic	Intergenic	-25975	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
95563	chr17	36932701	36932930	+	0	NA	non-coding (NR_135668, exon 2 of 2)	non-coding (NR_135668, exon 2 of 2)	3846	NR_135670	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
202301	chr6	157222651	157223380	+	0	NA	Intergenic	Intergenic	100504	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
228302	chr9	98112751	98113500	+	0	NA	intron (NM_014788, intron 1 of 5)	AluSq|SINE|Alu	6097	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
233502	chr9	138231451	138231550	+	0	NA	intron (NR_146178, intron 5 of 14)	intron (NR_146178, intron 5 of 14)	14644	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
202034	chr6	152988851	152988950	+	0	NA	non-coding (NR_126056, exon 6 of 6)	non-coding (NR_126056, exon 6 of 6)	-5321	NM_001142522	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
82157	chr16	14897271	14897730	+	0	NA	Intergenic	Intergenic	-4008	NR_036143	100422886		NR_036143	ENSG00000257381	MIR3179-2	-	microRNA 3179-2	ncRNA
167648	chr3	129618701	129618900	+	0	NA	Intergenic	Intergenic	-12124	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
19973	chr1	184968301	184968500	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	6108	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
125549	chr2	15576951	15577630	+	0	NA	Intergenic	Intergenic	-14578	NM_004939	1653		NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding
213984	chr7	142811071	142811830	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	40480	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
189066	chr5	170266501	170267500	+	0	NA	intron (NM_005565, intron 9 of 20)	intron (NM_005565, intron 9 of 20)	30777	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
1684	chr1	4303151	4303250	+	0	NA	Intergenic	(TTCCA)n|Simple_repeat|Simple_repeat	-108851	NR_027088	284661		NR_027088	ENSG00000235054	LINC01777	-	long intergenic non-protein coding RNA 1777	ncRNA
74883	chr15	63587421	63587880	+	0	NA	TTS (NR_034080)	TTS (NR_034080)	-9737	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
56591	chr12	117968901	117969380	+	0	NA	promoter-TSS (NM_173598)	promoter-TSS (NM_173598)	-150	NM_173598	283455		NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
118639	chr19	37293501	37294180	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-18997	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
3875	chr1	16985251	16985550	+	0	NA	TTS (NM_022089)	TTS (NM_022089)	-3814	NM_001135247	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
158926	chr3	10023651	10023750	+	0	NA	non-coding (NR_002786, exon 2 of 3)	non-coding (NR_002786, exon 2 of 3)	2436	NR_002786	152302		NR_002786	ENSG00000186162	CIDECP1	CICE|CIDECP	CIDEC pseudogene 1	pseudo
26332	chr10	15166951	15167050	+	0	NA	intron (NM_004808, intron 1 of 11)	intron (NM_004808, intron 1 of 11)	1693	NM_004808	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
88539	chr16	85443801	85444000	+	0	NA	Intergenic	Intergenic	-137575	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
159236	chr3	12915951	12917280	+	0	NA	intron (NM_014869, intron 6 of 13)	L1ME4b|LINE|L1	-31404	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
232239	chr9	134388171	134388530	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	8939	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
102237	chr17	75248851	75249200	+	0	NA	intron (NM_001291641, intron 1 of 17)	intron (NM_001291641, intron 1 of 17)	12581	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
188407	chr5	154057951	154058250	+	0	NA	TTS (NM_005927)	TTS (NM_005927)	19133	NM_005927	4238		NM_005927	ENSG00000037749	MFAP3	-	microfibril associated protein 3	protein-coding
169745	chr3	172517951	172518780	+	0	NA	3' UTR (NM_001190943, exon 2 of 2)	3' UTR (NM_001190943, exon 2 of 2)	5065	NM_001190943	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
32245	chr10	101840501	101841580	+	0	NA	intron (NM_173191, intron 1 of 9)	CpG	-1169	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
90749	chr17	2039801	2040300	+	0	NA	intron (NR_144474, intron 7 of 12)	intron (NR_144474, intron 7 of 12)	-1972	NM_080822	124641		NM_080822	ENSG00000262664	OVCA2	-	OVCA2 serine hydrolase domain containing	protein-coding
223681	chr8	144408801	144410380	+	0	NA	promoter-TSS (NM_013291)	promoter-TSS (NM_013291)	-255	NM_013291	29894		NM_013291	ENSG00000071894	CPSF1	CPSF160|HSU37012|MYP27|P/cl.18	cleavage and polyadenylation specific factor 1	protein-coding
80570	chr16	2855651	2855750	+	0	NA	exon (NM_022119, exon 4 of 6)	exon (NM_022119, exon 4 of 6)	2470	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
33459	chr10	119049671	119050030	+	0	NA	exon (NM_003750, exon 17 of 22)	exon (NM_003750, exon 17 of 22)	10288	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
72593	chr15	35078451	35078750	+	0	NA	Intergenic	Intergenic	6695	NM_001355281	388112		NM_001355281	ENSG00000255192	NANOGP8	NANOGP1|PN8	Nanog homeobox retrogene P8	protein-coding
216973	chr8	23064471	23065730	+	0	NA	intron (NM_147187, intron 1 of 9)	intron (NM_147187, intron 1 of 9)	-3129	NR_038873	286059		NR_038873	ENSG00000246130	TNFRSF10B-AS1	DR5-AS	TNFRSF10B antisense RNA 1	pseudo
113528	chr19	10124171	10124680	+	0	NA	Intergenic	LTR64|LTR|ERV1	-4526	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
236921	chrX	91779251	91779350	+	0	NA	Intergenic	CpG	-56161	NM_001168362	27328		NM_014522	ENSG00000102290	PCDH11X	PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119	protocadherin 11 X-linked	protein-coding
35393	chr11	1346971	1347130	+	0	NA	Intergenic	L1MC4a|LINE|L1	37342	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
146422	chr20	49584751	49585250	+	0	NA	Intergenic	Intergenic	-16863	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
137134	chr2	191030501	191031050	+	0	NA	intron (NM_003151, intron 23 of 23)	intron (NM_003151, intron 23 of 23)	9249	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
104533	chr17	81250301	81250900	+	0	NA	TTS (NM_138570)	TTS (NM_138570)	10686	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
88768	chr16	86990471	86990630	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-67234	NR_126008	440390		NR_126008	ENSG00000232190	LINC02181	-	long intergenic non-protein coding RNA 2181	ncRNA
73327	chr15	41952401	41952800	+	0	NA	intron (NM_139265, intron 2 of 5)	intron (NM_139265, intron 2 of 5)	19957	NM_139265	30844		NM_139265	ENSG00000103966	EHD4	PAST4	EH domain containing 4	protein-coding
112039	chr19	5128801	5129200	+	0	NA	intron (NM_015015, intron 11 of 22)	intron (NM_015015, intron 11 of 22)	159887	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
84738	chr16	30945601	30946400	+	0	NA	intron (NM_001382781, intron 9 of 10)	MSTB|LTR|ERVL-MaLR	-3068	NM_152288	93129		NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
195991	chr6	41989121	41989380	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSq2|SINE|Alu	-47402	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
54873	chr12	95623571	95623830	+	0	NA	Intergenic	(CTACCC)n|Simple_repeat|Simple_repeat	-25555	NR_077225	100132594		NR_077225	ENSG00000293270	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
122359	chr19	49339651	49339830	+	0	NA	TTS (NM_001256662)	TTS (NM_001256662)	4334	NM_001040031	951		NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
15672	chr1	150930121	150930600	+	0	NA	intron (NM_012432, intron 3 of 21)	intron (NM_012432, intron 3 of 21)	3997	NM_012432	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
219608	chr8	80066001	80066200	+	0	NA	intron (NM_001287144, intron 1 of 5)	intron (NM_001287144, intron 1 of 5)	14730	NM_001025252	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
193160	chr6	29653301	29654100	+	0	NA	Intergenic	Intergenic	-3392	NM_206814	4340		NM_002433	ENSG00000204655	MOG	BTN6|BTNL11|MOGIG2|NRCLP7	myelin oligodendrocyte glycoprotein	protein-coding
77309	chr15	82365701	82366030	+	0	NA	intron (NR_004847, intron 1 of 4)	intron (NR_004847, intron 1 of 4)	10729	NR_004847	100134869		NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	UBE2Q2 pseudogene 2	pseudo
156488	chr22	41279171	41279330	+	0	NA	intron (NM_001278651, intron 3 of 16)	AluSx1|SINE|Alu	6937	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
123267	chr19	53428851	53428950	+	0	NA	intron (NM_001350496, intron 9 of 12)	L1M4a2|LINE|L1	-3074	NR_003148	147804		NM_001010856	ENSG00000293185	TPM3P9	-	tropomyosin 3 pseudogene 9	pseudo
84569	chr16	30613721	30614180	+	0	NA	Intergenic	Intergenic	-3175	NR_073481	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
208733	chr7	73435551	73436080	+	0	NA	3' UTR (NM_003508, exon 1 of 1)	3' UTR (NM_003508, exon 1 of 1)	2037	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
176993	chr4	105181301	105181500	+	0	NA	intron (NR_126420, intron 2 of 5)	intron (NR_126420, intron 2 of 5)	34524	NM_001127208	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
169174	chr3	156682321	156682880	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	5936	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
203082	chr6	166338351	166339500	+	0	NA	intron (NR_130113, intron 1 of 6)	intron (NR_130113, intron 1 of 6)	3620	NR_130113	113402		NM_145169	ENSG00000198818	SFT2D1	C6orf83|pRGR1	SFT2 domain containing 1	protein-coding
131734	chr2	98412701	98413190	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-31642	NM_001351424	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
116695	chr19	18431121	18431430	+	0	NA	intron (NM_001009998, intron 5 of 16)	intron (NM_001009998, intron 5 of 16)	6034	NM_001253389	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
174440	chr4	39699901	39700800	+	0	NA	intron (NM_001111113, intron 1 of 4)	intron (NM_001111113, intron 1 of 4)	2214	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
156615	chr22	41574901	41575380	+	0	NA	3' UTR (NM_014460, exon 4 of 4)	3' UTR (NM_014460, exon 4 of 4)	14130	NM_014460	27254		NM_014460	ENSG00000172346	CSDC2	PIPPIN|dJ347H13.2	cold shock domain containing C2	protein-coding
219958	chr8	89728821	89729700	+	0	NA	intron (NR_125822, intron 1 of 4)	intron (NR_125822, intron 1 of 4)	28451	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
21985	chr1	209710021	209710330	+	0	NA	intron (NM_005525, intron 4 of 5)	MamGypLTR2b|LTR|Gypsy	5329	NM_005525	3290		NM_005525	ENSG00000117594	HSD11B1	11-DH|11-beta-HSD1|CORTRD2|HDL|HSD11|HSD11B|HSD11L|SDR26C1	hydroxysteroid 11-beta dehydrogenase 1	protein-coding
204311	chr7	2698051	2698150	+	0	NA	intron (NM_001321766, intron 1 of 6)	intron (NM_001321766, intron 1 of 6)	9898	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
139622	chr2	225064371	225064930	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-22182	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
117137	chr19	19297301	19297500	+	0	NA	intron (NM_172231, intron 7 of 13)	intron (NM_172231, intron 7 of 13)	23109	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
6335	chr1	27713471	27713830	+	0	NA	Intergenic	LTR19B|LTR|ERV1	-12311	NM_001143914	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
6283	chr1	27603071	27603300	+	0	NA	intron (NM_001029882, intron 1 of 6)	CpG	309	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
170778	chr3	188788471	188789130	+	0	NA	intron (NR_164692, intron 7 of 9)	intron (NR_164692, intron 7 of 9)	100019	NR_029502	407020		NR_029502	ENSG00000207651	MIR28	MIRN28|hsa-mir-28|miR-28	microRNA 28	ncRNA
81936	chr16	11788451	11789400	+	0	NA	intron (NM_014153, intron 1 of 22)	intron (NM_014153, intron 1 of 22)	8333	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
49209	chr12	15899121	15899680	+	0	NA	intron (NM_007178, intron 7 of 9)	intron (NM_007178, intron 7 of 9)	-11932	NM_001300779	51071		NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
190382	chr5	179761821	179762530	+	0	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	29353	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
56802	chr12	120208271	120209050	+	0	NA	intron (NR_038924, intron 2 of 3)	intron (NR_038924, intron 2 of 3)	7369	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
32032	chr10	101023151	101023450	+	0	NA	intron (NM_024895, intron 4 of 9)	intron (NM_024895, intron 4 of 9)	7829	NM_001195263	79955		NM_024895	ENSG00000186862	PDZD7	DFNB57|PDZK7	PDZ domain containing 7	protein-coding
115096	chr19	14274521	14275580	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-58693	NR_134916	101928845		NR_134916	ENSG00000267147	LINC01842	-	long intergenic non-protein coding RNA 1842	ncRNA
155016	chr22	37418401	37418900	+	0	NA	intron (NM_052906, intron 1 of 2)	intron (NM_052906, intron 1 of 2)	8820	NR_110512	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
9378	chr1	47298501	47298900	+	0	NA	intron (NM_003035, intron 6 of 16)	intron (NM_003035, intron 6 of 16)	15447	NM_001282936	6491		NM_003035	ENSG00000123473	STIL	MCPH7|SIL	STIL centriolar assembly protein	protein-coding
212932	chr7	130927501	130928330	+	0	NA	Intergenic	Intergenic	14451	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
106338	chr18	13003501	13003850	+	0	NA	intron (NM_032142, intron 3 of 44)	L2a|LINE|L2	12313	NM_032142	55125		NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
196226	chr6	42793021	42793800	+	0	NA	intron (NM_001318819, intron 2 of 13)	AluY|SINE|Alu	9914	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
30169	chr10	74193551	74193930	+	0	NA	intron (NM_001369124, intron 1 of 9)	AluJo|SINE|Alu	16977	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
189107	chr5	170330701	170332080	+	0	NA	promoter-TSS (NR_026945)	promoter-TSS (NR_026945)	-3	NR_026945	257358		NM_001025454	ENSG00000235172	LINC01366	-	long intergenic non-protein coding RNA 1366	ncRNA
130536	chr2	85651921	85652380	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	16049	NM_001367281	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
226627	chr9	73179471	73179830	+	0	NA	Intergenic	Intergenic	27785	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
98489	chr17	47223771	47224200	+	0	NA	TTS (NM_002476)	TTS (NM_002476)	14637	NM_002476	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
131633	chr2	97023071	97023430	+	0	NA	Intergenic	Intergenic	-36670	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
217705	chr8	30136471	30136630	+	0	NA	intron (NM_001100916, intron 2 of 2)	intron (NM_001100916, intron 2 of 2)	8115	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
164878	chr3	71081951	71082250	+	0	NA	intron (NM_001244810, intron 7 of 20)	AluSz|SINE|Alu	-17176	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
34710	chr10	133481271	133481630	+	0	NA	Intergenic	Intergenic	27522	NR_149718	619207		NM_001033584	ENSG00000214279	SCART1	-	scavenger receptor family member expressed on T cells 1	protein-coding
40474	chr11	64233851	64235680	+	0	NA	TTS (NM_001307981)	TTS (NM_001307981)	181	NM_003377	7423		NM_003377	ENSG00000173511	VEGFB	VEGFL|VRF	vascular endothelial growth factor B	protein-coding
16497	chr1	154819621	154820180	+	0	NA	intron (NM_170782, intron 2 of 7)	intron (NM_170782, intron 2 of 7)	39976	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
207422	chr7	44477051	44477780	+	0	NA	intron (NM_015332, intron 2 of 5)	intron (NM_015332, intron 2 of 5)	13243	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
103989	chr17	80033671	80034330	+	0	NA	intron (NM_019020, intron 1 of 11)	MIR|SINE|MIR	1872	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
130811	chr2	87025921	87026400	+	0	NA	Intergenic	AluJb|SINE|Alu	-4310	NM_002665	5342		NM_002665	ENSG00000125551	PLGLB2	PLGLA|PLGLA1|PLGP1|PLGP2|PRGA	plasminogen like B2	protein-coding
1691	chr1	4652621	4652900	+	0	NA	Intergenic	Intergenic	-1849	NM_001042478	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
208634	chr7	72990901	72991680	+	0	NA	Intergenic	Intergenic	14653	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
223064	chr8	143388571	143388930	+	0	NA	Intergenic	Intergenic	19874	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
233987	chrX	2732151	2732350	+	0	NA	intron (NM_001321369, intron 7 of 8)	intron (NM_001321369, intron 7 of 8)	-19790	NM_001141919	7499		NM_175569	ENSG00000124343	XG	PBDX	Xg glycoprotein (Xg blood group)	protein-coding
214501	chr7	150451401	150452580	+	0	NA	intron (NM_175571, intron 1 of 4)	intron (NM_175571, intron 1 of 4)	1360	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
104000	chr17	80096751	80097050	+	0	NA	intron (NM_017950, intron 18 of 19)	intron (NM_017950, intron 18 of 19)	-1928	NR_039607	100616121		NR_039607	ENSG00000265561	MIR1268B	-	microRNA 1268b	ncRNA
224554	chr9	19382321	19382780	+	0	NA	Intergenic	L1MB2|LINE|L1	-2314	NM_001010	6194		NM_001010	ENSG00000137154	RPS6	S6|eS6	ribosomal protein S6	protein-coding
201186	chr6	143098171	143098400	+	0	NA	intron (NM_001366344, intron 2 of 6)	L2|LINE|L2	-27854	NM_001366358	51390		NM_016108	ENSG00000146416	AIG1	AIG-1|dJ95L4.1	androgen induced 1	protein-coding
69453	chr14	94549471	94549630	+	0	NA	Intergenic	Intergenic	-11892	NM_001289033	5267		NM_006215	ENSG00000100665	SERPINA4	KAL|KLST|KST|PI-4|PI4|kallistatin	serpin family A member 4	protein-coding
7426	chr1	32963551	32964300	+	0	NA	intron (NM_001127361, intron 1 of 8)	intron (NM_001127361, intron 1 of 8)	884	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
15225	chr1	149494521	149494780	+	0	NA	intron (NM_001351365, intron 17 of 92)	intron (NM_001351365, intron 17 of 92)	18752	NM_001351365	101060226		NM_001351365	ENSG00000271383	NBPF19	-	NBPF member 19	protein-coding
101680	chr17	68356151	68357230	+	0	NA	exon (NM_001352904, exon 6 of 13)	exon (NM_001352904, exon 6 of 13)	-56933	NM_001278433	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
105894	chr18	3279571	3279730	+	0	NA	Intergenic	Intergenic	16931	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
67278	chr14	69260021	69260480	+	0	NA	promoter-TSS (NM_001168368)	promoter-TSS (NM_001168368)	92	NM_020692	57452		NM_020692	ENSG00000100626	GALNT16	GALNACT16|GALNTL1|GalNAc-T16	polypeptide N-acetylgalactosaminyltransferase 16	protein-coding
115068	chr19	14199071	14199430	+	0	NA	intron (NM_001008701, intron 1 of 23)	intron (NM_001008701, intron 1 of 23)	6919	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
121028	chr19	45801971	45802530	+	0	NA	exon (NM_030785, exon 4 of 6)	exon (NM_030785, exon 4 of 6)	-9405	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
70638	chr14	102914571	102914950	+	0	NA	Intergenic	Intergenic	-7903	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
108610	chr18	75249251	75250750	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	39203	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
143676	chr20	32021601	32021800	+	0	NA	intron (NM_080625, intron 5 of 8)	MIRc|SINE|MIR	11262	NM_080625	140706		NM_080625	ENSG00000101331	CCM2L	C20orf160|dJ310O13.5	CCM2 like scaffold protein	protein-coding
2293	chr1	8965821	8966130	+	0	NA	intron (NM_001270502, intron 3 of 5)	L1MB3|LINE|L1	20107	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
208116	chr7	58437351	58437450	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	987223	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
59998	chr13	32425701	32426700	+	0	NA	intron (NM_001353637, intron 1 of 1)	intron (NM_001353637, intron 1 of 1)	1930	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
231567	chr9	131495121	131497030	+	0	NA	3' UTR (NM_001384822, exon 31 of 31)	3' UTR (NM_001384822, exon 31 of 31)	5589	NR_002914	26786		NR_002914	ENSG00000235284	SNORD62A	RNU62|U62|U62A	small nucleolar RNA, C/D box 62A	snoRNA
101569	chr17	68045401	68045900	+	0	NA	intron (NM_002266, intron 9 of 10)	intron (NM_002266, intron 9 of 10)	9690	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
232494	chr9	136258051	136258350	+	0	NA	intron (NM_001378188, intron 22 of 25)	intron (NM_001378188, intron 22 of 25)	-12388	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
19600	chr1	179813801	179814000	+	0	NA	exon (NM_001329717, exon 6 of 6)	exon (NM_001329717, exon 6 of 6)	9976	NR_162130	113219451		NR_162130		MIR12116	-	microRNA 12116	ncRNA
172477	chr4	2062871	2063550	+	0	NA	intron (NM_178557, intron 2 of 2)	intron (NM_178557, intron 2 of 2)	3883	NM_178557	339983		NM_178557	ENSG00000185818	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8 like	protein-coding
169402	chr3	160754661	160757480	+	0	NA	promoter-TSS (NM_139245)	promoter-TSS (NM_139245)	-161	NM_139245	151742		NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
110035	chr19	1460351	1460450	+	0	NA	intron (NM_005883, intron 11 of 14)	MIRb|SINE|MIR	7416	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
79812	chr16	1412051	1412380	+	0	NA	intron (NM_001372107, intron 2 of 14)	intron (NM_001372107, intron 2 of 14)	2489	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
48096	chr12	7439771	7440390	+	0	NA	intron (NM_174941, intron 2 of 19)	CpG	4073	NM_174941	283316		NM_174941	ENSG00000177675	CD163L1	CD163B|M160|SCARI2|STAR|WC1	CD163 molecule like 1	protein-coding
122053	chr19	48659601	48660050	+	0	NA	intron (NR_004401, intron 1 of 4)	intron (NR_004401, intron 1 of 4)	13192	NM_145807	126147		NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
112333	chr19	5914121	5914580	+	0	NA	promoter-TSS (NM_004058)	promoter-TSS (NM_004058)	96	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
146786	chr20	50920701	50921530	+	0	NA	intron (NM_001347511, intron 1 of 4)	MIRb|SINE|MIR	-9869	NR_110007	101927631		NR_110007	ENSG00000259456	ADNP-AS1	-	ADNP antisense RNA 1	ncRNA
120355	chr19	43592971	43593330	+	0	NA	exon (NM_001007561, exon 3 of 3)	exon (NM_001007561, exon 3 of 3)	2985	NM_001007561	126298		NM_001007561	ENSG00000167378	IRGQ	FKSG27|IRGQ1	immunity related GTPase Q	protein-coding
75643	chr15	67246221	67246830	+	0	NA	intron (NM_001271885, intron 1 of 9)	intron (NM_001271885, intron 1 of 9)	8136	NM_024666	79719		NM_024666	ENSG00000103591	AAGAB	KPPP1|PPKP1|PPKP1A|p34	alpha and gamma adaptin binding protein	protein-coding
93703	chr17	19418751	19418850	+	0	NA	Intergenic	Intergenic	7568	NM_007148	7732		NM_007148	ENSG00000128482	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
81307	chr16	4692071	4692230	+	0	NA	Intergenic	Intergenic	-1543	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
238780	chrX	154363901	154364800	+	0	NA	exon (NM_001456, exon 14 of 47)	exon (NM_001456, exon 14 of 47)	10284	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
104281	chr17	80834171	80834780	+	0	NA	intron (NM_020761, intron 9 of 33)	intron (NM_020761, intron 9 of 33)	-28843	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
61885	chr13	77307271	77307430	+	0	NA	intron (NM_015057, intron 1 of 82)	intron (NM_015057, intron 1 of 82)	19744	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
158822	chr3	9748121	9748530	+	0	NA	TTS (NM_004634)	TTS (NM_004634)	-1619	NR_148930	4968		NM_002542	ENSG00000114026	OGG1	HMMH|HOGG1|MUTM|OGH1	8-oxoguanine DNA glycosylase	protein-coding
167254	chr3	128573851	128573950	+	0	NA	non-coding (NR_125802, exon 3 of 3)	non-coding (NR_125802, exon 3 of 3)	2186	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
144484	chr20	35639721	35640250	+	0	NA	intron (NM_152926, intron 1 of 15)	intron (NM_152926, intron 1 of 15)	13924	NM_003915	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
175879	chr4	80058301	80059880	+	0	NA	intron (NM_001145794, intron 3 of 15)	intron (NM_001145794, intron 3 of 15)	14139	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
103548	chr17	78663871	78664030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-31893	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
87184	chr16	69382221	69382700	+	0	NA	intron (NM_005652, intron 3 of 9)	MLT1F2|LTR|ERVL-MaLR	3547	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
231710	chr9	131735271	131735650	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	1987	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
229374	chr9	121077301	121077500	+	0	NA	intron (NM_001369894, intron 1 of 29)	intron (NM_001369894, intron 1 of 29)	2445	NM_001369896	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
53441	chr12	65176101	65176300	+	0	NA	intron (NM_001167614, intron 1 of 12)	L2c|LINE|L2	6617	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
41575	chr11	66334271	66334830	+	0	NA	exon (NM_001363559, exon 6 of 10)	exon (NM_001363559, exon 6 of 10)	1884	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
18652	chr1	166973901	166974100	+	0	NA	intron (NM_199351, intron 1 of 9)	intron (NM_199351, intron 1 of 9)	1540	NM_199351	387597		NM_199351	ENSG00000143195	ILDR2	C1orf32|dJ782G3.1	immunoglobulin like domain containing receptor 2	protein-coding
3511	chr1	16050951	16051250	+	0	NA	intron (NM_000085, intron 12 of 19)	intron (NM_000085, intron 12 of 19)	2338	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
135595	chr2	166826801	166827200	+	0	NA	Intergenic	Intergenic	-61480	NM_152381	129446		NM_152381	ENSG00000163092	XIRP2	CMYA3	xin actin binding repeat containing 2	protein-coding
192756	chr6	26441871	26443950	+	0	NA	intron (NM_001242803, intron 1 of 5)	L2b|LINE|L2	2406	NM_001242803	10384		NM_006994	ENSG00000111801	BTN3A3	BTF3|BTN3.3	butyrophilin subfamily 3 member A3	protein-coding
115172	chr19	14427901	14428100	+	0	NA	Intergenic	AluSx|SINE|Alu	-5306	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
50901	chr12	49284821	49285280	+	0	NA	Intergenic	AluJb|SINE|Alu	-10097	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
85808	chr16	56977101	56977500	+	0	NA	intron (NM_000078, intron 10 of 15)	intron (NM_000078, intron 10 of 15)	-12257	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
4538	chr1	21956851	21957780	+	0	NA	Intergenic	Intergenic	-19707	NM_007352	23436		NM_007352	ENSG00000219073	CELA3B	CBPP|ELA3B	chymotrypsin like elastase 3B	protein-coding
232006	chr9	133355871	133357350	+	0	NA	promoter-TSS (NM_003172)	promoter-TSS (NM_003172)	60	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
223408	chr8	143929401	143930300	+	0	NA	intron (NM_201383, intron 22 of 31)	CpG-27763	9747	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
109593	chr19	921591	922530	+	0	NA	Intergenic	Intergenic	-3975	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
193313	chr6	30110771	30110930	+	0	NA	intron (NR_134870, intron 3 of 9)	intron (NR_134870, intron 3 of 9)	2240	NR_134870	11074		NM_007028	ENSG00000204616	TRIM31	C6orf13|HCG1|HCGI|RNF	tripartite motif containing 31	protein-coding
106790	chr18	23871151	23871850	+	0	NA	exon (NM_001127717, exon 38 of 74)	exon (NM_001127717, exon 38 of 74)	-1520	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
146264	chr20	48949751	48950050	+	0	NA	intron (NM_006420, intron 3 of 38)	intron (NM_006420, intron 3 of 38)	28189	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
78195	chr15	90570551	90571050	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	40877	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
50372	chr12	47218211	47219180	+	0	NA	intron (NM_138371, intron 3 of 3)	AluJr|SINE|Alu	-2252	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
159009	chr3	10427121	10427200	+	0	NA	intron (NM_001353564, intron 3 of 20)	MIRc|SINE|MIR	-32598	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
151941	chr22	19114501	19114900	+	0	NA	intron (NM_001184781, intron 1 of 9)	intron (NM_001184781, intron 1 of 9)	7712	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
212164	chr7	116870751	116871250	+	0	NA	intron (NM_006136, intron 1 of 9)	L2|LINE|L2	8413	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
33953	chr10	124631771	124632680	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-71803	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
186300	chr5	134569201	134569400	+	0	NA	intron (NM_001289985, intron 9 of 11)	intron (NM_001289985, intron 9 of 11)	43192	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
72072	chr15	28893101	28893500	+	0	NA	intron (NM_001353788, intron 1 of 14).2	intron (NM_001353788, intron 1 of 14).2	7326	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
27516	chr10	32302101	32302300	+	0	NA	intron (NR_168511, intron 2 of 13)	AluY|SINE|Alu	44958	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
23714	chr1	231861471	231861630	+	0	NA	intron (NM_001164541, intron 9 of 9)	(TATT)n|Simple_repeat|Simple_repeat	-43033	NR_002227	27184		NR_002227		DISC2	DISC1-AS1|DISC1OS|NCRNA00015	disrupted in schizophrenia 2	ncRNA
197556	chr6	79536771	79537830	+	0	NA	5' UTR (NM_181714, exon 1 of 9)	5' UTR (NM_181714, exon 1 of 9)	130	NM_181714	167691		NM_181714	ENSG00000135338	LCA5	C6orf152	lebercilin LCA5	protein-coding
184974	chr5	113510651	113511500	+	0	NA	Intergenic	Intergenic	-2619	NM_022828	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
141940	chr20	1268021	1268380	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	1906	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
85101	chr16	33706951	33707250	+	0	NA	Intergenic	Intergenic	-62277	NR_130771	104644205		NR_130771		ENPP7P13	DUNQU1	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13	pseudo
81109	chr16	4370621	4371000	+	0	NA	intron (NM_001351729, intron 9 of 27)	intron (NM_001351729, intron 9 of 27)	-1038	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
173564	chr4	10100601	10101680	+	0	NA	intron (NM_017491, intron 3 of 14)	intron (NM_017491, intron 3 of 14)	15659	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
165771	chr3	105767171	105767780	+	0	NA	intron (NR_135806, intron 4 of 20)	intron (NR_135806, intron 4 of 20)	100116	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
129326	chr2	68736071	68736630	+	0	NA	intron (NM_001364821, intron 1 of 10)	Mam_R4|LINE|Dong-R4	973	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
230287	chr9	127940271	127940630	+	0	NA	TTS (NM_001035254)	TTS (NM_001035254)	-2596	NM_001378436	8818		NM_003863	ENSG00000136908	DPM2	CDG1U	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein-coding
78160	chr15	90419331	90420450	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	31648	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
100289	chr17	59710021	59710930	+	0	NA	intron (NM_001329394, intron 1 of 11)	intron (NM_001329394, intron 1 of 11)	2821	NM_001329401	81671		NM_030938	ENSG00000062716	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding
117269	chr19	19460601	19461500	+	0	NA	intron (NM_001384522, intron 3 of 13)	intron (NM_001384522, intron 3 of 13)	25987	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
23675	chr1	231357071	231357230	+	0	NA	Intergenic	AluSc|SINE|Alu	18857	NM_032018	83932		NM_032018	ENSG00000010072	SPRTN	C1orf124|DVC1|PRO4323|spartan	SprT-like N-terminal domain	protein-coding
106461	chr18	13823751	13824300	+	0	NA	promoter-TSS (NM_005913)	promoter-TSS (NM_005913)	-124	NM_005913	4161		NM_005913	ENSG00000176136	MC5R	MC2	melanocortin 5 receptor	protein-coding
154296	chr22	31872071	31872580	+	0	NA	intron (NR_157126, intron 34 of 39)	intron (NR_157126, intron 34 of 39)	66129	NM_001302819	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
114216	chr19	11446421	11447380	+	0	NA	intron (NM_001001329, intron 9 of 17)	intron (NM_001001329, intron 9 of 17)	-11118	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
78408	chr15	92074801	92075000	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	220596	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
63293	chr13	113978101	113978300	+	0	NA	3' UTR (NM_007368, exon 24 of 24)	3' UTR (NM_007368, exon 24 of 24)	-4124	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
107106	chr18	35059101	35059300	+	0	NA	intron (NR_046177, intron 1 of 6)	MIR3|SINE|MIR	17787	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
54001	chr12	75438371	75438700	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-42220	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
73097	chr15	40955621	40956280	+	0	NA	3' UTR (NM_024111, exon 3 of 3)	3' UTR (NM_024111, exon 3 of 3)	2479	NM_024111	79094		NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
164657	chr3	66615651	66615950	+	0	NA	Intergenic	Intergenic	-114679	NM_001377345	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
89424	chr16	88921771	88922330	+	0	NA	intron (NM_005187, intron 1 of 11)	MIRb|SINE|MIR	-17221	NR_168285	100129697		NM_001290330		LOC100129697	-	uncharacterized LOC100129697	ncRNA
207600	chr7	44970801	44971430	+	0	NA	intron (NM_033054, intron 7 of 21)	intron (NM_033054, intron 7 of 21)	7900	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
19479	chr1	174998121	175001750	+	0	NA	promoter-TSS (NM_014412)	promoter-TSS (NM_014412)	-12	NM_014412	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
47649	chr12	6284201	6284430	+	0	NA	Intergenic	Intergenic	-26017	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
218181	chr8	41985371	41986030	+	0	NA	intron (NM_001305878, intron 3 of 13)	LTR67B|LTR|ERVL	-66050	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
67758	chr14	73719871	73720300	+	0	NA	intron (NM_001043318, intron 11 of 11)	intron (NM_001043318, intron 11 of 11)	-5701	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
140593	chr2	233383471	233383630	+	0	NA	intron (NM_152879, intron 1 of 29)	L1M5|LINE|L1	-4604	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
59064	chr13	20772371	20772530	+	0	NA	intron (NM_001318939, intron 1 of 4)	MER20|DNA|hAT-Charlie	1508	NR_134934	221143		NM_174928	ENSG00000150456	EEF1AKMT1	ESP13|N6AMT2|eEF1A-KMT	EEF1A lysine methyltransferase 1	protein-coding
120967	chr19	45711401	45711800	+	0	NA	3' UTR (NM_001080469, exon 2 of 2)	3' UTR (NM_001080469, exon 2 of 2)	3678	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
130084	chr2	74500421	74500830	+	0	NA	intron (NM_001009812, intron 1 of 1)	intron (NM_001009812, intron 1 of 1)	-1022	NM_001282430	85474		NM_001009812	ENSG00000179528	LBX2	LP3727	ladybird homeobox 2	protein-coding
13799	chr1	117512571	117513050	+	0	NA	intron (NM_006699, intron 12 of 12)	intron (NM_006699, intron 12 of 12)	92960	NR_121626	100996263		NR_121626	ENSG00000236866	TENT5C-DT	-	TENT5C divergent transcript	ncRNA
97388	chr17	43362851	43362950	+	0	NA	Intergenic	Intergenic	25998	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
141696	chr2	241819101	241819700	+	0	NA	Intergenic	Intergenic	8004	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
137898	chr2	200858501	200858730	+	0	NA	intron (NR_027856, intron 3 of 10)	AluSz|SINE|Alu	5946	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
55416	chr12	104485321	104486280	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	28852	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
211111	chr7	102513651	102513750	+	0	NA	intron (NM_001367767, intron 1 of 20)	intron (NM_001367767, intron 1 of 20)	4077	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
84820	chr16	31084771	31085130	+	0	NA	TTS (NM_014699)	TTS (NM_014699)	3859	NM_001039503	339105		NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	serine protease 53	protein-coding
202315	chr6	157281501	157282030	+	0	NA	Intergenic	Intergenic	41754	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
207950	chr7	53031851	53031950	+	0	NA	Intergenic	L1PA2|LINE|L1	-3733	NM_182595	285877		NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin like 12	protein-coding
164907	chr3	71130101	71131300	+	0	NA	promoter-TSS (NM_001244815)	promoter-TSS (NM_001244815)	-114	NM_001244815	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
210509	chr7	100207901	100208200	+	0	NA	TTS (NR_028038)	TTS (NR_028038)	-11198	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
10204	chr1	62131171	62131350	+	0	NA	intron (NM_176877, intron 41 of 42)	intron (NM_176877, intron 41 of 42)	-52404	NR_036059	100422946		NR_036059	ENSG00000283690	MIR3116-2	-	microRNA 3116-2	ncRNA
123139	chr19	52090771	52090930	+	0	NA	intron (NM_001352298, intron 1 of 5)	LTR3|LTR|ERVK	3421	NM_001369828	284371		NM_001136499	ENSG00000197608	ZNF841	-	zinc finger protein 841	protein-coding
97512	chr17	43938051	43939350	+	0	NA	non-coding (NR_136406, exon 2 of 2)	non-coding (NR_136406, exon 2 of 2)	439	NR_136406	107546764		NR_136406	ENSG00000261514	LINC01976	-	long intergenic non-protein coding RNA 1976	ncRNA
139400	chr2	222312351	222312850	+	0	NA	Intergenic	CpG	-5871	NR_136638	440934		NR_136638	ENSG00000291155	CT75	-	cancer/testis associated transcript 75	ncRNA
200013	chr6	129492751	129493050	+	0	NA	intron (NM_000426, intron 58 of 64)	AluSx3|SINE|Alu	217277	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
188595	chr5	157177771	157178350	+	0	NA	Intergenic	AluJb|SINE|Alu	-2780	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
18917	chr1	168411821	168412080	+	0	NA	intron (NR_037851, intron 3 of 3)	MIRb|SINE|MIR	10706	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
149289	chr21	28738471	28738630	+	0	NA	Intergenic	Intergenic	146817	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
198251	chr6	99421951	99422430	+	0	NA	intron (NM_001322406, intron 1 of 12)	intron (NM_001322406, intron 1 of 12)	-2681	NR_125843	101927365		NR_125843		PNISR-AS1	-	PNISR antisense RNA 1	ncRNA
1849	chr1	6347851	6348400	+	0	NA	intron (NM_007274, intron 2 of 8)	intron (NM_007274, intron 2 of 8)	10804	NM_181866	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
48326	chr12	9033401	9033600	+	0	NA	Intergenic	Intergenic	31570	NR_034140	253128		NM_182550	ENSG00000214851	LINC00612	C12orf33	long intergenic non-protein coding RNA 612	ncRNA
57547	chr12	122184471	122185130	+	0	NA	intron (NM_152759, intron 2 of 11)	intron (NM_152759, intron 2 of 11)	1677	NM_001098519	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
45303	chr11	118149451	118149950	+	0	NA	intron (NM_174934, intron 1 of 4)	intron (NM_174934, intron 1 of 4)	3123	NM_001142348	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
26688	chr10	22632971	22633200	+	0	NA	intron (NM_005028, intron 1 of 9)	MIR|SINE|MIR	81023	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
134819	chr2	148538421	148538680	+	0	NA	Intergenic	Intergenic	-106201	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
204817	chr7	5686221	5686680	+	0	NA	intron (NM_207111, intron 13 of 16)	MIRc|SINE|MIR	-5989	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
30367	chr10	77927751	77927850	+	0	NA	non-coding (NR_024585, exon 1 of 1)	non-coding (NR_024585, exon 1 of 1)	988	NR_024585	100128292		NR_024585		DLG5-AS1	-	DLG5 antisense RNA 1	ncRNA
221936	chr8	129883971	129884330	+	0	NA	intron (NM_001353311, intron 4 of 13)	intron (NM_001353311, intron 4 of 13)	55661	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
99005	chr17	48790701	48791280	+	0	NA	intron (NM_173623, intron 2 of 8)	intron (NM_173623, intron 2 of 8)	3334	NM_173623	284076		NM_173623	ENSG00000170703	TTLL6	TTL.6	tubulin tyrosine ligase like 6	protein-coding
40732	chr11	64818171	64818530	+	0	NA	Intergenic	Intergenic	-7056	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
158795	chr3	9651601	9651800	+	0	NA	intron (NM_022485, intron 1 of 16)	AluSz|SINE|Alu	2195	NM_022485	64419		NM_022485	ENSG00000163719	MTMR14	C3orf29	myotubularin related protein 14	protein-coding
118715	chr19	38227451	38227550	+	0	NA	intron (NM_001363579, intron 1 of 11)	intron (NM_001363579, intron 1 of 11)	2195	NM_001363579	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
175846	chr4	78773871	78774430	+	0	NA	Intergenic	AluJr|SINE|Alu	-2200	NM_017593	55589		NM_017593	ENSG00000138756	BMP2K	BIKE|HRIHFB2017	BMP2 inducible kinase	protein-coding
173105	chr4	6339301	6339500	+	0	NA	intron (NM_001206995, intron 7 of 9)	intron (NM_001206995, intron 7 of 9)	42468	NM_181876	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
141668	chr2	241786821	241787080	+	0	NA	intron (NM_022134, intron 1 of 3)	MER4A1|LTR|ERV1	10128	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
137866	chr2	200828971	200829200	+	0	NA	Intergenic	Intergenic	16699	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
148465	chr20	64036421	64036930	+	0	NA	intron (NM_001348090, intron 4 of 6)	intron (NM_001348090, intron 4 of 6)	2948	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
180463	chr5	10704901	10705380	+	0	NA	intron (NM_004394, intron 2 of 3)	MER103C|DNA|hAT-Charlie	56094	NM_004394	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
214386	chr7	149776921	149777200	+	0	NA	intron (NR_163594, intron 3 of 102)	intron (NR_163594, intron 3 of 102)	1018	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
166524	chr3	114418701	114419200	+	0	NA	intron (NM_001164343, intron 8 of 11)	intron (NM_001164343, intron 8 of 11)	-34643	NR_121661	101929754		NR_121661	ENSG00000242290	ZBTB20-AS5	-	ZBTB20 antisense RNA 5	ncRNA
23222	chr1	227732171	227732930	+	0	NA	exon (NM_001161465, exon 6 of 6)	exon (NM_001161465, exon 6 of 6)	-2446	NM_001323935	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
212505	chr7	128658321	128659000	+	0	NA	non-coding (NR_024368, exon 5 of 5)	non-coding (NR_024368, exon 5 of 5)	-13606	NM_001128926	346653		NM_001012454	ENSG00000205085	GARIN1A	FAM137B|FAM71F2|GARI	golgi associated RAB2 interactor 1A	protein-coding
88619	chr16	85614721	85615400	+	0	NA	intron (NM_001278184, intron 1 of 14)	CpG-10032	1738	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
130317	chr2	84969271	84970190	+	0	NA	Intergenic	Intergenic	-1431	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
113153	chr19	8345251	8345550	+	0	NA	Intergenic	AluJo|SINE|Alu	-2138	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
200319	chr6	133837821	133838100	+	0	NA	intron (NR_027030, intron 2 of 2)	intron (NR_027030, intron 2 of 2)	16813	NR_027030	154089		NM_153224		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
111785	chr19	4442951	4443380	+	0	NA	3' UTR (NM_005483, exon 15 of 15)	3' UTR (NM_005483, exon 15 of 15)	-2813	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
225275	chr9	34438471	34438730	+	0	NA	intron (NM_001184942, intron 1 of 5)	LTR12C|LTR|ERV1	19970	NM_001184942	203259		NM_147202	ENSG00000164970	FAM219A	C9orf25	family with sequence similarity 219 member A	protein-coding
11862	chr1	93037801	93038000	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-41335	NM_001164393	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
82217	chr16	15018071	15018650	+	0	NA	intron (NM_001324019, intron 11 of 22)	AluJb|SINE|Alu	-7963	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
18725	chr1	167464121	167464380	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	54279	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
238852	chrX	154476821	154477350	+	0	NA	TTS (NM_006014)	TTS (NM_006014)	2172	NM_006014	8270		NM_006014	ENSG00000196976	LAGE3	CVG5|DXS9879E|DXS9951E|ESO3|GAMOS2|ITBA2|Pcc1	L antigen family member 3	protein-coding
199729	chr6	125755251	125755750	+	0	NA	intron (NM_012259, intron 4 of 4)	intron (NM_012259, intron 4 of 4)	5868	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
159303	chr3	12993321	12994300	+	0	NA	intron (NM_001134382, intron 1 of 13)	CpG	-6709	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
148572	chr21	5018871	5019780	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-3206	NM_001363770	102723996		NM_001363770	ENSG00000277117	LOC102723996	-	ICOS ligand	protein-coding
90597	chr17	1616301	1616700	+	0	NA	intron (NM_152346, intron 3 of 13).2	intron (NM_152346, intron 3 of 13).2	-11466	NM_001284499	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
62468	chr13	99368171	99368600	+	0	NA	intron (NR_026644, intron 8 of 8)	L1MC5a|LINE|L1	12254	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
178914	chr4	158767251	158767680	+	0	NA	Intergenic	Intergenic	-1561	NM_020840	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
174054	chr4	26889521	26889980	+	0	NA	intron (NM_020860, intron 1 of 11)	ERVL-B4-int|LTR|ERVL	28909	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
193019	chr6	28347101	28347300	+	0	NA	intron (NM_001135215, intron 3 of 7)	LTR16|LTR|ERVL	-2747	NM_001242894	80317		NM_024493	ENSG00000189298	ZKSCAN3	ZF47|ZFP306|ZNF306|ZNF309|ZSCAN13|ZSCAN35|Zfp47|dJ874C20.1|dJ874C20.1.|zfp-47	zinc finger with KRAB and SCAN domains 3	protein-coding
143649	chr20	31866771	31867350	+	0	NA	intron (NM_001012644, intron 3 of 6)	intron (NM_001012644, intron 3 of 6)	3171	NM_177991	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
71384	chr14	105508151	105509050	+	0	NA	Intergenic	AluJb|SINE|Alu	17351	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
17240	chr1	156326451	156326750	+	0	NA	intron (NR_036564, intron 6 of 14)	AluSx|SINE|Alu	-10714	NM_144627	128229		NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding
62100	chr13	94712751	94713400	+	0	NA	promoter-TSS (NM_007084)	promoter-TSS (NM_007084)	359	NR_046514	100507533		NR_046514	ENSG00000227640	SOX21-AS1	-	SOX21 antisense divergent transcript 1	ncRNA
196077	chr6	42279371	42280780	+	0	NA	intron (NM_033502, intron 4 of 17)	intron (NM_033502, intron 4 of 17)	-62214	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
125451	chr2	12081301	12081900	+	0	NA	intron (NR_110196, intron 2 of 5)	Tigger12c|DNA|TcMar-Tigger	74484	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
115404	chr19	15285951	15286330	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-5689	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
93226	chr17	17839721	17842600	+	0	NA	Intergenic	Intergenic	-4149	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
30678	chr10	80503851	80504450	+	0	NA	intron (NM_001128309, intron 2 of 5)	intron (NM_001128309, intron 2 of 5)	31792	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
2962	chr1	11923921	11924180	+	0	NA	intron (NM_138346, intron 1 of 2)	L2a|LINE|L2	2377	NM_138346	90231		NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
77107	chr15	78930671	78930830	+	0	NA	intron (NM_001319137, intron 8 of 12)	intron (NM_001319137, intron 8 of 12)	14296	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
12043	chr1	98044951	98046350	+	0	NA	promoter-TSS (NR_039604)	promoter-TSS (NR_039604)	-299	NR_039604	100616452		NR_039604	ENSG00000284247	MIR2682	mir-2682	microRNA 2682	ncRNA
5124	chr1	24885621	24886080	+	0	NA	Intergenic	AluSq2|SINE|Alu	33566	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
154268	chr22	31628151	31628630	+	0	NA	intron (NM_014338, intron 1 of 8)	intron (NM_014338, intron 1 of 8)	2434	NM_014338	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
42910	chr11	73385971	73386130	+	0	NA	intron (NM_032871, intron 1 of 10)	MIR3|SINE|MIR	9382	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
102285	chr17	75317971	75318130	+	0	NA	TTS (NM_002086)	TTS (NM_002086)	-28601	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
171984	chr4	928851	929380	+	0	NA	intron (NM_005255, intron 1 of 27)	intron (NM_005255, intron 1 of 27)	3201	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
25447	chr10	6591171	6592480	+	0	NA	Intergenic	Intergenic	-11179	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
38344	chr11	44567371	44567830	+	0	NA	intron (NM_002231, intron 1 of 9)	intron (NM_002231, intron 1 of 9)	1937	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
184038	chr5	91372771	91373130	+	0	NA	intron (NR_138071, intron 7 of 7)	L2b|LINE|L2	7147	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
169620	chr3	171267271	171267430	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-160591	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
73129	chr15	41291651	41291950	+	0	NA	intron (NR_152821, intron 2 of 4)	MER21C|LTR|ERVL	6458	NR_152821	729082		NR_026757	ENSG00000247556	OIP5-AS1	cyrano|linc-OIP5	OIP5 antisense RNA 1	ncRNA
189150	chr5	171370951	171371050	+	0	NA	Intergenic	AluSz|SINE|Alu	4882	NR_145720	109616973		NR_145720	ENSG00000206909	SNORA70J	-	small nucleolar RNA, H/ACA box 70J	snoRNA
70837	chr14	103644001	103644280	+	0	NA	intron (NM_001130107, intron 1 of 15)	AluY|SINE|Alu	14952	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
40536	chr11	64302871	64303300	+	0	NA	intron (NR_133662, intron 8 of 10)	AluSg|SINE|Alu	-2439	NM_004451	2101		NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen related receptor alpha	protein-coding
2888	chr1	11648671	11649250	+	0	NA	intron (NM_012168, intron 5 of 5)	CpG	-5447	NM_183412	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
217936	chr8	38102721	38103180	+	0	NA	Intergenic	AluSp|SINE|Alu	-2543	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
135826	chr2	170436151	170436330	+	0	NA	intron (NR_045682, intron 22 of 35)	intron (NR_045682, intron 22 of 35)	-85297	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
9603	chr1	52356121	52356380	+	0	NA	exon (NM_001330585, exon 18 of 25)	exon (NM_001330585, exon 18 of 25)	9955	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
47341	chr12	1821201	1821400	+	0	NA	intron (NM_001163925, intron 1 of 4)	intron (NM_001163925, intron 1 of 4)	735	NM_001039029	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
100853	chr17	64148901	64149130	+	0	NA	exon (NM_018469, exon 12 of 12)	exon (NM_018469, exon 12 of 12)	2676	NR_002995	677842		NR_002995	ENSG00000277887	SNORA50C	ACA62|SNORA76|SNORA76C	small nucleolar RNA, H/ACA box 50C	snoRNA
215244	chr7	156922671	156924100	+	0	NA	Intergenic	LTR62|LTR|ERVL	-26327	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
187543	chr5	142767851	142768350	+	0	NA	Intergenic	MER66C|LTR|ERV1	-2277	NM_001135608	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
233569	chrX	294671	294830	+	0	NA	intron (NR_163416, intron 6 of 7)	AluSx|SINE|Alu	11272	NM_001370373	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228369	chr9	99102501	99102700	+	0	NA	Intergenic	MIRb|SINE|MIR	-2513	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
164422	chr3	58807051	58807150	+	0	NA	intron (NM_001351531, intron 13 of 15)	L1PA3|LINE|L1	-17371	NR_110820	101929238		NR_110820	ENSG00000242428	CFAP20DC-AS1	C3orf67-AS1	CFAP20DC antisense RNA 1	ncRNA
103567	chr17	78681251	78681780	+	0	NA	intron (NM_017456, intron 10 of 12)	intron (NM_017456, intron 10 of 12)	35517	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
207878	chr7	50384651	50384950	+	0	NA	intron (NM_001220768, intron 4 of 4)	intron (NM_001220768, intron 4 of 4)	65550	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
140020	chr2	231037371	231038580	+	0	NA	exon (NM_001144994, exon 1 of 3)	exon (NM_001144994, exon 1 of 3)	452	NM_001144994	257407		NM_001144994	ENSG00000204128	C2orf72	-	chromosome 2 open reading frame 72	protein-coding
20797	chr1	201120071	201120480	+	0	NA	Intergenic	Intergenic	-4903	NM_001270601	647219		NM_001270601	ENSG00000232237	ASCL5	ASH-5|AmeloD|bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding
226920	chr9	79579971	79580130	+	0	NA	intron (NM_001351556, intron 4 of 18)	intron (NM_001351556, intron 4 of 18)	6873	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
150021	chr21	37227121	37227900	+	0	NA	intron (NM_006052, intron 7 of 7)	intron (NM_006052, intron 7 of 7)	19007	NR_026719	257203		NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9	ncRNA
127785	chr2	44199271	44199430	+	0	NA	intron (NM_177969, intron 1 of 4)	AluSc8|SINE|Alu	30475	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
202426	chr6	157946021	157946280	+	0	NA	Intergenic	LTR40c|LTR|ERVL	-35713	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
167311	chr3	128718901	128719100	+	0	NA	Intergenic	Intergenic	-7183	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
170213	chr3	184152751	184153730	+	0	NA	Intergenic	AluYj4|SINE|Alu	-2137	NM_004423	1857		NM_004423	ENSG00000161202	DVL3	DRS3	dishevelled segment polarity protein 3	protein-coding
53057	chr12	57630301	57631280	+	0	NA	intron (NM_001478, intron 4 of 10)	intron (NM_001478, intron 4 of 10)	1889	NM_001276468	2583		NM_001478	ENSG00000135454	B4GALNT1	GALGT|GALNACT|GalNAc-T|SPG26	beta-1,4-N-acetyl-galactosaminyltransferase 1	protein-coding
36307	chr11	3848921	3849550	+	0	NA	Intergenic	L2c|LINE|L2	-5369	NM_001382581	6786		NM_003156	ENSG00000167323	STIM1	D11S4896E|GOK|IMD10|STRMK|TAM|TAM1	stromal interaction molecule 1	protein-coding
27224	chr10	28896551	28896650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	50192	NR_164114	283080		NM_173577	ENSG00000232624	C10orf126	bA492M23.1	chromosome 10 open reading frame 126	ncRNA
41069	chr11	65501301	65502060	+	0	NA	non-coding (NR_002819, exon 1 of 1)	non-coding (NR_002819, exon 1 of 1)	3942	NR_144568	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
234353	chrX	15493171	15493650	+	0	NA	promoter-TSS (NM_001018109)	promoter-TSS (NM_001018109)	-77	NM_001018109	8544		NM_003662	ENSG00000087842	PIR	-	pirin	protein-coding
233680	chrX	1168401	1168600	+	0	NA	Intergenic	AluSx1|SINE|Alu	44149	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
45061	chr11	117056451	117057050	+	0	NA	intron (NM_001281748, intron 1 of 24)	L1ME3G|LINE|L1	41678	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
74914	chr15	63668321	63669280	+	0	NA	intron (NM_003922, intron 40 of 77)	L1MEc|LINE|L1	-67973	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
15136	chr1	148787771	148788130	+	0	NA	intron (NR_158171, intron 1 of 4).2	MIR|SINE|MIR	4019	NR_158171	100996716		NR_158171		SEC22B2P	CH17-189H20.1|SEC22B2	SEC22 homolog B2, pseudogene	pseudo
133186	chr2	112958521	112959200	+	0	NA	Intergenic	L2a|LINE|L2	-19146	NM_001278568	56300		NM_019618	ENSG00000136688	IL36G	IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2	interleukin 36 gamma	protein-coding
170982	chr3	194585871	194586900	+	0	NA	intron (NR_047575, intron 1 of 2)	intron (NR_047575, intron 1 of 2)	2117	NR_047574	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
236770	chrX	78958571	78959130	+	0	NA	intron (NM_014499, intron 3 of 3)	intron (NM_014499, intron 3 of 3)	13459	NM_001324225	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
79241	chr16	390551	390850	+	0	NA	intron (NR_024453, intron 2 of 2)	AluY|SINE|Alu	-6029	NM_001286436	4833		NM_005009	ENSG00000103202	NME4	NDPK-D|NM23H4|nm23-H4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding
177681	chr4	121795501	121796100	+	0	NA	Intergenic	LTR3B_|LTR|ERVK	-5523	NM_005033	5393		NM_005033	ENSG00000123737	EXOSC9	PCH1D|PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6	exosome component 9	protein-coding
103710	chr17	78827421	78827880	+	0	NA	intron (NM_001385180, intron 4 of 19)	AluJo|SINE|Alu	13164	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
148776	chr21	8206701	8207900	+	0	NA	non-coding (NR_146144, exon 1 of 1)	non-coding (NR_146144, exon 1 of 1)	-1173	NR_037421	100500862		NR_037421	ENSG00000275708	MIR3648-1	MIR3648|hsa-mir-3648-1	microRNA 3648-1	ncRNA
48113	chr12	7843301	7843840	+	0	NA	intron (NM_001286237, intron 1 of 9)	intron (NM_001286237, intron 1 of 9)	29345	NM_001286236	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
4168	chr1	19392951	19394250	+	0	NA	intron (NM_001313932, intron 2 of 4)	intron (NM_001313932, intron 2 of 4)	81274	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
52314	chr12	54934821	54935850	+	0	NA	Intergenic	L3b|LINE|CR1	38397	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
196393	chr6	43278021	43278680	+	0	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	-19910	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
149853	chr21	35063521	35063780	+	0	NA	Intergenic	Intergenic	-14348	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
129688	chr2	70501751	70501850	+	0	NA	intron (NM_001308158, intron 2 of 5)	intron (NM_001308158, intron 2 of 5)	-20160	NR_046798	100874273		NR_046798	ENSG00000224606	TGFA-IT1	-	TGFA intronic transcript 1	ncRNA
61700	chr13	74064921	74065380	+	0	NA	intron (NM_007249, intron 1 of 7)	(CATA)n|Simple_repeat|Simple_repeat	68779	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
160730	chr3	32453001	32453400	+	0	NA	intron (NM_138410, intron 4 of 4)	FLAM_A|SINE|Alu	49652	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
231548	chr9	131476751	131477800	+	0	NA	intron (NM_013318, intron 16 of 31)	intron (NM_013318, intron 16 of 31)	-8390	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
184292	chr5	96814821	96815280	+	0	NA	promoter-TSS (NM_001198541)	promoter-TSS (NM_001198541)	-905	NM_001198541	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
109020	chr18	79719971	79720730	+	0	NA	intron (NM_048368, intron 10 of 11)	intron (NM_048368, intron 10 of 11)	38920	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
219521	chr8	74366101	74366300	+	0	NA	3' UTR (NM_001362930, exon 5 of 5)	3' UTR (NM_001362930, exon 5 of 5)	15797	NM_018972	54332		NM_018972	ENSG00000104381	GDAP1	CMT4|CMT4A|CMTRIA	ganglioside induced differentiation associated protein 1	protein-coding
68903	chr14	91350541	91352450	+	0	NA	intron (NM_001080414, intron 4 of 29)	intron (NM_001080414, intron 4 of 29)	66325	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
129415	chr2	69304851	69305150	+	0	NA	Intergenic	Intergenic	82227	NM_002056	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
58155	chr12	124938101	124938300	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	22653	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
115047	chr19	14134671	14134830	+	0	NA	intron (NM_018154, intron 1 of 3)	intron (NM_018154, intron 1 of 3)	1839	NM_018154	55723		NM_018154	ENSG00000105011	ASF1B	CIA-II	anti-silencing function 1B histone chaperone	protein-coding
190639	chr5	181219501	181220330	+	0	NA	Intergenic	CpG	2718	NR_039781	100616342		NR_039781	ENSG00000264732	MIR4638	mir-4638	microRNA 4638	ncRNA
65926	chr14	55335071	55335530	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	63146	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
174830	chr4	48290471	48290700	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	-20747	NM_003215	7006		NM_003215	ENSG00000135605	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
175391	chr4	70737051	70737850	+	0	NA	intron (NM_001345840, intron 1 of 13)	intron (NM_001345840, intron 1 of 13)	3040	NM_001345840	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
70014	chr14	100081301	100083030	+	0	NA	intron (NM_016337, intron 1 of 13)	L2b|LINE|L2	16743	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
162860	chr3	49353551	49353650	+	0	NA	Intergenic	AluY|SINE|Alu	4753	NM_001329502	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
28803	chr10	62187301	62187700	+	0	NA	Intergenic	Intergenic	81344	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
151675	chr22	17104471	17104630	+	0	NA	intron (NM_014339, intron 8 of 12)	intron (NM_014339, intron 8 of 12)	16810	NM_031890	27439		NM_031890	ENSG00000183307	TMEM121B	CECR6	transmembrane protein 121B	protein-coding
158478	chr22	50775221	50775730	+	0	NA	intron (NM_001003789, intron 5 of 8)	intron (NM_001003789, intron 5 of 8)	8161	NM_001350008	11158		NM_007081	ENSG00000079974	RABL2B	-	RAB, member of RAS oncogene family like 2B	protein-coding
204254	chr7	2612401	2612780	+	0	NA	3' UTR (NM_001287501, exon 20 of 20)	3' UTR (NM_001287501, exon 20 of 20)	-19396	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
55175	chr12	100234701	100235050	+	0	NA	intron (NR_135073, intron 9 of 10)	intron (NR_135073, intron 9 of 10)	32204	NM_001364818	120863		NM_152317	ENSG00000166153	DEPDC4	DEP.4	DEP domain containing 4	protein-coding
72963	chr15	40493121	40493780	+	0	NA	Intergenic	Intergenic	22466	NM_130468	113189		NM_130468	ENSG00000169105	CHST14	ATCS|D4ST1|EDSMC1|HNK1ST	carbohydrate sulfotransferase 14	protein-coding
25826	chr10	11208351	11208450	+	0	NA	intron (NM_001326346, intron 2 of 11)	MER39B|LTR|ERV1	43370	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
196099	chr6	42347301	42347930	+	0	NA	intron (NM_033502, intron 3 of 17)	intron (NM_033502, intron 3 of 17)	104436	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
203734	chr7	1144771	1145480	+	0	NA	Intergenic	Intergenic	-6868	NM_001134395	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
131082	chr2	88874151	88874330	+	0	NA	Intergenic	Intergenic	61870	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
239240	chrY	12958301	12958750	+	0	NA	Intergenic	AluSx|SINE|Alu	52820	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
186851	chr5	139460571	139461880	+	0	NA	intron (NM_001293739, intron 1 of 9)	MIRb|SINE|MIR	1518	NM_001293739	641700		NM_001077693	ENSG00000249751	ECSCR	ARIA|ECSM2	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding
134602	chr2	144330101	144330530	+	0	NA	intron (NM_001354353, intron 1 of 9)	Tigger3a|DNA|TcMar-Tigger	1919	NM_001376318	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
75684	chr15	67829721	67830300	+	0	NA	intron (NM_001365915, intron 3 of 8)	CpG-8353	4501	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
24233	chr1	236155521	236155780	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	13111	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
56961	chr12	120530451	120530650	+	0	NA	Intergenic	AluSx|SINE|Alu	-1392	NM_032314	84274		NM_032314	ENSG00000110871	COQ5	COQ10D9	coenzyme Q5, methyltransferase	protein-coding
121269	chr19	46703571	46703730	+	0	NA	intron (NM_001079881, intron 6 of 18)	AluY|SINE|Alu	5704	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
197752	chr6	87183121	87183650	+	0	NA	intron (NM_015021, intron 1 of 7)	intron (NM_015021, intron 1 of 7)	27820	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
80975	chr16	3938501	3939680	+	0	NA	Intergenic	CpG	11354	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
157644	chr22	46119651	46119980	+	0	NA	Intergenic	Intergenic	6129	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
192635	chr6	26134751	26135050	+	0	NA	Intergenic	AluSx|SINE|Alu	10728	NM_003512	8334		NM_003512	ENSG00000180573	H2AC6	H2A/l|H2AFL|HIST1H2AC|dJ221C16.4	H2A clustered histone 6	protein-coding
87143	chr16	69172971	69173130	+	0	NA	Intergenic	MER41A|LTR|ERV1	-14097	NM_006750	6645		NM_006750	ENSG00000168807	SNTB2	D16S2531E|EST25263|SNT2B2|SNT3|SNTL	syntrophin beta 2	protein-coding
115229	chr19	14504001	14504650	+	0	NA	Intergenic	AluJb|SINE|Alu	-8176	NM_202494	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
196142	chr6	42429201	42429800	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	22551	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
184127	chr5	94615151	94615450	+	0	NA	intron (NM_001385719, intron 1 of 6)	MIR3|SINE|MIR	2825	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
138012	chr2	201270071	201270880	+	0	NA	intron (NM_001228, intron 4 of 9)	MIR|SINE|MIR	9939	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
82709	chr16	20808001	20808200	+	0	NA	intron (NM_030941, intron 2 of 19)	MER1B|DNA|hAT-Charlie	1573	NM_001144924	81691		NM_030941	ENSG00000005189	REXO5	NEF-sp	RNA exonuclease 5	protein-coding
134952	chr2	151808401	151808880	+	0	NA	intron (NM_177985, intron 4 of 5)	intron (NM_177985, intron 4 of 5)	19781	NM_012097	26225		NM_012097	ENSG00000162980	ARL5A	ARFLP5|ARL5	ADP ribosylation factor like GTPase 5A	protein-coding
36936	chr11	10885851	10885950	+	0	NA	Intergenic	Intergenic	27683	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
27712	chr10	33330501	33331050	+	0	NA	exon (NM_001024628, exon 2 of 12)	exon (NM_001024628, exon 2 of 12)	3892	NM_001330068	8829		NM_003873	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
101987	chr17	74758961	74760030	+	0	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	10867	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
57938	chr12	123635251	123635350	+	0	NA	intron (NM_001271867, intron 1 of 11)	AluSz|SINE|Alu	1471	NM_001271867	2967		NM_001516	ENSG00000111358	GTF2H3	BTF2|P34|TFB4|TFIIH	general transcription factor IIH subunit 3	protein-coding
214628	chr7	150735851	150735950	+	0	NA	intron (NM_001199577, intron 3 of 5)	intron (NM_001199577, intron 3 of 5)	-1448	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
95822	chr17	38755071	38755230	+	0	NA	intron (NR_104195, intron 2 of 5).2	AluJo|SINE|Alu	2409	NR_104195	5691		NM_002795	ENSG00000277791	PSMB3	HC10-II	proteasome 20S subunit beta 3	protein-coding
231989	chr9	133340351	133341000	+	0	NA	TTS (NM_181491)	TTS (NM_181491)	-4487	NM_006753	6838		NM_006753	ENSG00000148296	SURF6	RRP14	surfeit 6	protein-coding
228063	chr9	96117771	96117930	+	0	NA	Intergenic	HAL1|LINE|L1	-1439	NR_132344	158434		NM_001256408	ENSG00000275465	LOC158434	-	uncharacterized LOC158434	ncRNA
187270	chr5	141516001	141516200	+	0	NA	3' UTR (NM_001079812, exon 27 of 27)	3' UTR (NM_001079812, exon 27 of 27)	26859	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
203633	chr7	964771	964930	+	0	NA	TTS (NM_001031617)	TTS (NM_001031617)	-9443	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
41603	chr11	66385551	66385650	+	0	NA	Intergenic	AluJr|SINE|Alu	-13124	NM_001300868	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
168169	chr3	139934571	139934750	+	0	NA	promoter-TSS (NM_022131)	promoter-TSS (NM_022131)	-525	NM_022131	64084		NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding
95993	chr17	39198751	39198850	+	0	NA	Intergenic	Intergenic	-1131	NM_000723	782		NM_000723	ENSG00000067191	CACNB1	CAB1|CACNLB1|CCHLB1	calcium voltage-gated channel auxiliary subunit beta 1	protein-coding
16264	chr1	153988351	153988880	+	0	NA	Intergenic	AluSp|SINE|Alu	-2140	NM_001349946	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
186965	chr5	139667921	139668780	+	0	NA	intron (NM_001317203, intron 2 of 3)	CpG	-7093	NM_001317208	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
42635	chr11	72243821	72244550	+	0	NA	promoter-TSS (NM_005169)	promoter-TSS (NM_005169)	-9	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
124581	chr2	714321	714580	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-37044	NM_152834	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
84075	chr16	29601821	29602500	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	-2895	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
123248	chr19	53194921	53195680	+	0	NA	Intergenic	AluJb|SINE|Alu	-1942	NM_001353459	79788		NM_024733	ENSG00000197497	ZNF665	ZFP160L	zinc finger protein 665	protein-coding
6898	chr1	31580151	31580250	+	0	NA	intron (NM_001204414, intron 3 of 10)	(CT)n|Simple_repeat|Simple_repeat	2055	NM_001204415	64129		NM_022164	ENSG00000142910	TINAGL1	ARG1|LCN7|LIECG3|TINAGRP	tubulointerstitial nephritis antigen like 1	protein-coding
234059	chrX	7110871	7111030	+	0	NA	intron (NM_001178135, intron 1 of 3)	LTR7|LTR|ERV1	-36340	NM_001320750	412		NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase	protein-coding
156153	chr22	40190951	40191650	+	0	NA	intron (NM_015088, intron 1 of 20)	MIR|SINE|MIR	13375	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
108917	chr18	79443321	79443580	+	0	NA	intron (NM_172389, intron 3 of 9)	CpG	43151	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
238919	chrX	154731901	154732280	+	0	NA	intron (NR_104114, intron 1 of 8)	intron (NR_104114, intron 1 of 8)	18987	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
144275	chr20	34580351	34580930	+	0	NA	intron (NM_080476, intron 10 of 11)	intron (NM_080476, intron 10 of 11)	21922	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
104057	chr17	80150001	80150480	+	0	NA	Intergenic	Intergenic	-3112	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
88311	chr16	84180771	84181130	+	0	NA	5' UTR (NM_001243160, exon 9 of 12)	5' UTR (NM_001243160, exon 9 of 12)	6107	NM_001243160	9013		NM_005679	ENSG00000103168	TAF1C	MGC:39976|SL1|TAFI110|TAFI95	TATA-box binding protein associated factor, RNA polymerase I subunit C	protein-coding
57289	chr12	121643151	121643450	+	0	NA	Intergenic	AluSz|SINE|Alu	16750	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
190701	chr6	215551	216330	+	0	NA	Intergenic	MIR|SINE|MIR	-10456	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
227111	chr9	85818921	85819280	+	0	NA	intron (NR_029410, intron 2 of 8)	intron (NR_029410, intron 2 of 8)	13098	NR_029410	389765		NR_029410		LOC389765	-	kinesin family member 27 pseudogene	pseudo
97716	chr17	44350571	44351450	+	0	NA	intron (NM_002087, intron 7 of 12)	intron (NM_002087, intron 7 of 12)	5708	NM_002087	2896		NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin precursor	protein-coding
93514	chr17	19012821	19013080	+	0	NA	intron (NM_001270649, intron 9 of 13)	intron (NM_001270649, intron 9 of 13)	-8186	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
54363	chr12	89707901	89711080	+	0	NA	promoter-TSS (NM_001366526)	promoter-TSS (NM_001366526)	-124	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
157743	chr22	46616371	46617430	+	0	NA	intron (NM_001366660, intron 1 of 17)	intron (NM_001366660, intron 1 of 17)	-3486	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
168010	chr3	136860401	136860700	+	0	NA	intron (NR_110175, intron 1 of 3)	MSTB1|LTR|ERVL-MaLR	1513	NR_110177	101927597		NR_110175		NCK1-DT	NCK1-AS1|SLC35G2-AS1	NCK1 divergent transcript	ncRNA
207907	chr7	50576371	50576550	+	0	NA	Intergenic	L1PA4|LINE|L1	-11055	NM_001082971	1644		NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
129293	chr2	68466931	68468430	+	0	NA	promoter-TSS (NM_001024680)	promoter-TSS (NM_001024680)	95	NM_173545	200558		NM_173545	ENSG00000169621	APLF	APFL|C2orf13|PALF|Xip1|ZCCHH1	aprataxin and PNKP like factor	protein-coding
98037	chr17	45427751	45428900	+	0	NA	intron (NR_169601, intron 4 of 20)	intron (NR_169601, intron 4 of 20)	-2692	NM_001385394	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
164950	chr3	71249271	71249830	+	0	NA	intron (NM_001012505, intron 5 of 6)	MIRb|SINE|MIR	-4473	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
160398	chr3	28171871	28172250	+	0	NA	Intergenic	Intergenic	-69559	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
137909	chr2	200886521	200887050	+	0	NA	intron (NM_032472, intron 2 of 6)	intron (NM_032472, intron 2 of 6)	2292	NM_130906	53938		NM_032472	ENSG00000240344	PPIL3	CYPJ	peptidylprolyl isomerase like 3	protein-coding
230051	chr9	127403101	127403300	+	0	NA	intron (NM_001271712, intron 3 of 7)	intron (NM_001271712, intron 3 of 7)	6031	NM_014580	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
23503	chr1	228748251	228748850	+	0	NA	Intergenic	Intergenic	13071	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
154247	chr22	31612751	31613050	+	0	NA	intron (NM_001007467, intron 24 of 32)	intron (NM_001007467, intron 24 of 32)	8631	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
26887	chr10	26367951	26368050	+	0	NA	Intergenic	Intergenic	-70341	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
117028	chr19	18923251	18923630	+	0	NA	intron (NM_019070, intron 6 of 12)	AluSx1|SINE|Alu	3725	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
220166	chr8	95100021	95101330	+	0	NA	intron (NR_148914, intron 9 of 11)	intron (NR_148914, intron 9 of 11)	-27493	NR_132986	105375650		NR_132986	ENSG00000245080	MIR3150BHG	-	MIR3150B host gene	ncRNA
154323	chr22	32103671	32103900	+	0	NA	intron (NM_000343, intron 13 of 14)	Charlie5|DNA|hAT-Charlie	-18192	NR_040114	23782		NR_040114	ENSG00000290475	AP1B1P1	ADTB1L1|dJ127L4.2	AP1B1 pseudogene 1	pseudo
128101	chr2	47965171	47965330	+	0	NA	Intergenic	MER51A|LTR|ERV1	-58752	NM_001190274	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
120660	chr19	45086701	45086900	+	0	NA	intron (NR_134887, intron 1 of 1)	intron (NR_134887, intron 1 of 1)	3591	NR_134887	105372419		NR_134887	ENSG00000267348	GEMIN7-AS1	-	GEMIN7 antisense RNA 1	ncRNA
102102	chr17	74989251	74989750	+	0	NA	intron (NM_014603, intron 1 of 4)	L2c|LINE|L2	1868	NM_014603	30850		NM_014603	ENSG00000109089	CDR2L	HUMPPA	cerebellar degeneration related protein 2 like	protein-coding
139457	chr2	223897751	223898050	+	0	NA	intron (NM_020830, intron 6 of 11)	MSTA|LTR|ERVL-MaLR	47435	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
118154	chr19	35015551	35015930	+	0	NA	intron (NM_001320036, intron 11 of 19)	intron (NM_001320036, intron 11 of 19)	-14730	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
209459	chr7	76468051	76468500	+	0	NA	intron (NM_001102594, intron 2 of 10)	intron (NM_001102594, intron 2 of 10)	6620	NM_001102594	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
199538	chr6	118805621	118806080	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	23142	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
194709	chr6	33723671	33723830	+	0	NA	intron (NM_054111, intron 5 of 5)	intron (NM_054111, intron 5 of 5)	-12050	NM_032340	84300		NM_032340	ENSG00000137288	UQCC2	C6orf125|C6orf126|Cbp6|M19|MC3DN7|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
137659	chr2	197431021	197431350	+	0	NA	intron (NM_001005526, intron 1 of 4)	AluSx|SINE|Alu	3843	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
164600	chr3	66243021	66243280	+	0	NA	intron (NM_173471, intron 3 of 10)	intron (NM_173471, intron 3 of 10)	22147	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
207657	chr7	45081371	45081780	+	0	NA	intron (NM_001146334, intron 4 of 7)	intron (NM_001146334, intron 4 of 7)	7394	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
152543	chr22	20995601	20996080	+	0	NA	exon (NM_006767, exon 17 of 21)	exon (NM_006767, exon 17 of 21)	-6082	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
42412	chr11	69057251	69057900	+	0	NA	intron (NM_139075, intron 4 of 24)	intron (NM_139075, intron 4 of 24)	8643	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
161080	chr3	38119501	38119700	+	0	NA	intron (NM_001321153, intron 33 of 36)	AluJo|SINE|Alu	17527	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
51204	chr12	50519471	50519630	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	14565	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
148749	chr21	7745351	7745600	+	0	NA	5' UTR (NM_001376899, exon 1 of 4)	5' UTR (NM_001376899, exon 1 of 4)	497	NM_058182	54065		NM_058182	ENSG00000205670	SMIM11	C21orf51|FAM165B|SMIM11A|SMIM11B	small integral membrane protein 11	protein-coding
226452	chr9	71710271	71710430	+	0	NA	intron (NM_001135820, intron 15 of 22)	intron (NM_001135820, intron 15 of 22)	58163	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
185012	chr5	115297821	115298080	+	0	NA	Intergenic	L2a|LINE|L2	-1296	NM_001375899	153733		NM_152549	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
3830	chr1	16895561	16897090	+	0	NA	TTS (NR_004400).4	TTS (NR_004400).4	345	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
120589	chr19	45009651	45010400	+	0	NA	intron (NM_006509, intron 2 of 10)	intron (NM_006509, intron 2 of 10)	8561	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
21059	chr1	203288471	203288630	+	0	NA	non-coding (NR_117097, exon 3 of 3)	non-coding (NR_117097, exon 3 of 3)	850	NR_117098	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
25051	chr10	3776871	3777600	+	0	NA	non-coding (NR_027653, exon 4 of 4)	non-coding (NR_027653, exon 4 of 4)	7974	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
219345	chr8	70245151	70245830	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	157900	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
198087	chr6	90274121	90275350	+	0	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	22108	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
15909	chr1	151675771	151676150	+	0	NA	intron (NM_030918, intron 7 of 11)	AluJr|SINE|Alu	40843	NM_001172649	11189		NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP Elav-like family member 3	protein-coding
11901	chr1	93336671	93337030	+	0	NA	intron (NR_034089, intron 5 of 8)	intron (NR_034089, intron 5 of 8)	8961	NR_034089	100131564		NR_034089		CCDC18-AS1	-	CCDC18 antisense RNA 1	ncRNA
4397	chr1	21021301	21021500	+	0	NA	intron (NM_001198801, intron 4 of 34)	intron (NM_001198801, intron 4 of 34)	-32968	NR_031657	100302155		NR_031657	ENSG00000221808	MIR1256	MIRN1256|hsa-mir-1256	microRNA 1256	ncRNA
219870	chr8	85190171	85190330	+	0	NA	intron (NM_001083589, intron 1 of 7)	(AC)n|Simple_repeat|Simple_repeat	2585	NM_001083589	1875		NM_001951	ENSG00000133740	E2F5	E2F-5	E2F transcription factor 5	protein-coding
186357	chr5	134850001	134850200	+	0	NA	intron (NM_001135586, intron 1 of 1)	intron (NM_001135586, intron 1 of 1)	4132	NM_001300894	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
170495	chr3	186125201	186125400	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-16211	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
60519	chr13	41385151	41385580	+	0	NA	Intergenic	Intergenic	-57199	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
237002	chrX	101803201	101803730	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	54112	NR_159739	55998		NM_032946	ENSG00000290798	NXF5	-	nuclear RNA export factor 5	pseudo
11372	chr1	89644221	89644680	+	0	NA	intron (NM_032270, intron 1 of 2)	L1MEf|LINE|L1	11330	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
39789	chr11	61953421	61953780	+	0	NA	intron (NR_134580, intron 2 of 10)	AluSg|SINE|Alu	-1635	NM_001363593	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
49717	chr12	31271921	31272700	+	0	NA	Intergenic	AluSg|SINE|Alu	-52006	NR_026806	79857		NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
93135	chr17	17730901	17731100	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	35302	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
146582	chr20	50103721	50104000	+	0	NA	intron (NM_001282579, intron 1 of 4)	L2a|LINE|L2	9290	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
77601	chr15	85296271	85297100	+	0	NA	Intergenic	Intergenic	56334	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
113488	chr19	10068121	10068500	+	0	NA	intron (NR_027300, intron 22 of 29)	AluJb|SINE|Alu	-18007	NM_018381	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
173913	chr4	25237251	25237550	+	0	NA	intron (NM_018323, intron 1 of 9)	AluSq2|SINE|Alu	3367	NM_018323	55300		NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
141647	chr2	241736421	241736780	+	0	NA	intron (NM_001352824, intron 2 of 9)	MLT1D|LTR|ERVL-MaLR	1970	NM_152783	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
191017	chr6	3092301	3092930	+	0	NA	intron (NM_001354931, intron 6 of 9)	CpG	24121	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
161201	chr3	39150021	39150700	+	0	NA	intron (NM_001320560, intron 1 of 4)	intron (NM_001320560, intron 1 of 4)	-2930	NM_001320559	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
83182	chr16	23484621	23484880	+	0	NA	intron (NM_015044, intron 8 of 16)	L1MB7|LINE|L1	25744	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
153695	chr22	29265201	29265680	+	0	NA	intron (NM_012265, intron 3 of 6)	intron (NM_012265, intron 3 of 6)	2541	NR_138044	25807		NM_012265	ENSG00000100263	RHBDD3	C22orf3|HS984G1A|PTAG	rhomboid domain containing 3	protein-coding
113615	chr19	10307471	10307830	+	0	NA	intron (NM_001103167, intron 1 of 3)	AluSx1|SINE|Alu	1907	NM_001103167	100125288		NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	zinc finger GATA like protein 1	protein-coding
173282	chr4	7060271	7060430	+	0	NA	3' UTR (NM_025196, exon 4 of 4)	3' UTR (NM_025196, exon 4 of 4)	7714	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
30877	chr10	86899521	86899980	+	0	NA	intron (NM_004329, intron 5 of 12)	intron (NM_004329, intron 5 of 12)	-56009	NM_001330120	6623		NM_003087	ENSG00000173267	SNCG	BCSG1|SR	synuclein gamma	protein-coding
192552	chr6	25331371	25331530	+	0	NA	intron (NM_001173977, intron 2 of 36)	L2|LINE|L2	52076	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
98814	chr17	48335951	48336480	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	41868	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
194631	chr6	33576571	33576800	+	0	NA	intron (NM_001188, intron 2 of 5)	(A)n|Simple_repeat|Simple_repeat	3591	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
172499	chr4	2252301	2254080	+	0	NA	intron (NM_006454, intron 3 of 5)	intron (NM_006454, intron 3 of 5)	-3034	NR_039964	100616358		NR_039964	ENSG00000284276	MIR4800	mir-4800	microRNA 4800	ncRNA
2358	chr1	9283901	9284380	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-8754	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
188826	chr5	159095871	159096380	+	0	NA	intron (NM_001364155, intron 3 of 14)	intron (NM_001364155, intron 3 of 14)	1831	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
182644	chr5	67161871	67162250	+	0	NA	intron (NM_015183, intron 26 of 27)	intron (NM_015183, intron 26 of 27)	34739	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
191384	chr6	7589971	7591130	+	0	NA	intron (NM_152551, intron 1 of 8)	CpG	352	NM_152551	154007		NM_152551	ENSG00000168566	SNRNP48	C6orf151|dJ336K20B.1|dJ512B11.2	small nuclear ribonucleoprotein U11/U12 subunit 48	protein-coding
85607	chr16	53703501	53705000	+	0	NA	promoter-TSS (NM_001328423)	promoter-TSS (NM_001328423)	94	NM_001080432	79068		NM_001080432	ENSG00000140718	FTO	ALKBH9|BMIQ14|GDFD|IFEX9	FTO alpha-ketoglutarate dependent dioxygenase	protein-coding
49925	chr12	39672351	39672850	+	0	NA	intron (NR_135051, intron 6 of 18)	L1MA4A|LINE|L1	46417	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
71343	chr14	105446921	105447380	+	0	NA	intron (NM_001203258, intron 3 of 20)	intron (NM_001203258, intron 3 of 20)	-25795	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
178563	chr4	151113951	151114400	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	10348	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
175897	chr4	80125461	80126550	+	0	NA	Intergenic	Intergenic	-52533	NM_001286780	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
12084	chr1	99765551	99765880	+	0	NA	promoter-TSS (NM_001013660)	promoter-TSS (NM_001013660)	78	NM_001013660	391059		NM_001013660	ENSG00000156869	FRRS1	SDFR2|SDR2	ferric chelate reductase 1	protein-coding
120948	chr19	45690201	45690980	+	0	NA	5' UTR (NM_001369751, exon 2 of 4)	5' UTR (NM_001369751, exon 2 of 4)	1363	NM_001369752	6633		NM_004597	ENSG00000125743	SNRPD2	SMD2|SNRPD1|Sm-D2	small nuclear ribonucleoprotein D2 polypeptide	protein-coding
1024	chr1	1868051	1868350	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSq2|SINE|Alu	22887	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
134420	chr2	143103571	143103730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-25769	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
84493	chr16	30491751	30492700	+	0	NA	intron (NM_002209, intron 11 of 30)	intron (NM_002209, intron 11 of 30)	-11694	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
205575	chr7	21356901	21357100	+	0	NA	Intergenic	Intergenic	-71083	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
169927	chr3	178325401	178325600	+	0	NA	Intergenic	Intergenic	-93701	NR_046786	100874330		NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA
222813	chr8	142464071	142464500	+	0	NA	exon (NM_001702, exon 2 of 31)	exon (NM_001702, exon 2 of 31)	14636	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
225484	chr9	35621751	35622330	+	0	NA	Intergenic	MIRb|SINE|MIR	-3627	NM_001782	971		NM_001782	ENSG00000137101	CD72	CD72b|LYB2	CD72 molecule	protein-coding
197880	chr6	89145551	89146980	+	0	NA	exon (NM_001010853, exon 1 of 7)	exon (NM_001010853, exon 1 of 7)	210	NM_001010853	135293		NM_001010853	ENSG00000146281	PM20D2	ACY1L2	peptidase M20 domain containing 2	protein-coding
198314	chr6	100720001	100720550	+	0	NA	intron (NM_001284271, intron 11 of 12)	intron (NM_001284271, intron 11 of 12)	161054	NM_006828	10973		NM_006828	ENSG00000112249	ASCC3	ASC1p200|HELIC1|MRT81|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
168237	chr3	141370071	141371430	+	0	NA	intron (NM_001376119, intron 2 of 3)	intron (NM_001376119, intron 2 of 3)	2246	NM_001376113	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
38383	chr11	44726051	44727340	+	0	NA	promoter-TSS (NM_130783)	promoter-TSS (NM_130783)	-267	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
142271	chr20	3187521	3187780	+	0	NA	Intergenic	Intergenic	-14101	NM_001367609	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
36109	chr11	3058771	3059500	+	0	NA	Intergenic	AluSz|SINE|Alu	-1712	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
76976	chr15	78225971	78226200	+	0	NA	intron (NM_001199377, intron 1 of 13)	MLT1F2|LTR|ERVL-MaLR	8480	NM_015162	23205		NM_015162	ENSG00000103740	ACSBG1	BG|BG1|BGM|GR-LACS|LPD	acyl-CoA synthetase bubblegum family member 1	protein-coding
132862	chr2	111049971	111050280	+	0	NA	intron (NM_001371254, intron 17 of 18)	intron (NM_001371254, intron 17 of 18)	65463	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
160366	chr3	27877351	27878200	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-43639	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
236123	chrX	57587871	57588030	+	0	NA	Intergenic	Intergenic	-4061	NM_007157	158586		NM_007157	ENSG00000198455	ZXDB	ZNF905|dJ83L6.1	zinc finger X-linked duplicated B	protein-coding
6556	chr1	28653551	28654100	+	0	NA	Intergenic	AluSq2|SINE|Alu	5225	NR_004407	26824		NR_004407	ENSG00000274978	RNU11	RNU11-1|U11	RNA, U11 small nuclear	snRNA
154029	chr22	30452651	30453230	+	0	NA	intron (NM_001376914, intron 12 of 12)	AluJb|SINE|Alu	19077	NM_174975	266629		NM_174975	ENSG00000100012	SEC14L3	TAP2	SEC14 like lipid binding 3	protein-coding
182743	chr5	68274951	68276180	+	0	NA	intron (NM_181523, intron 4 of 15)	intron (NM_181523, intron 4 of 15)	-12954	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
145554	chr20	44210171	44212300	+	0	NA	promoter-TSS (NM_016470)	promoter-TSS (NM_016470)	149	NR_038337	100505783		NR_038337	ENSG00000223891	OSER1-DT	OSER1-AS1	OSER1 divergent transcript	ncRNA
216171	chr8	11768101	11768580	+	0	NA	Intergenic	Intergenic	-1370	NM_145043	252969		NM_145043	ENSG00000154328	NEIL2	NEH2|NEI2	nei like DNA glycosylase 2	protein-coding
191230	chr6	5813601	5814100	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-118578	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
28071	chr10	43309401	43310080	+	0	NA	Intergenic	L1M5|LINE|L1	-42675	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
91290	chr17	4156251	4156550	+	0	NA	intron (NM_144611, intron 3 of 3)	intron (NM_144611, intron 3 of 3)	12703	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
121137	chr19	46193171	46193330	+	0	NA	intron (NR_135234, intron 2 of 2)	Tigger7|DNA|TcMar-Tigger	9812	NR_135234	645553		NR_135234	ENSG00000268621	IGFL2-AS1	-	IGFL2 antisense RNA 1	ncRNA
79958	chr16	1772301	1772500	+	0	NA	promoter-TSS (NM_001257370)	promoter-TSS (NM_001257370)	-691	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
235874	chrX	51614551	51614730	+	0	NA	Intergenic	Intergenic	4272	NM_001355276	347549		NM_001355276	ENSG00000224109	CENPVL3	CENPVP3	centromere protein V like 3	protein-coding
220198	chr8	96133021	96133280	+	0	NA	Intergenic	Intergenic	27656	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
175436	chr4	71111021	71111700	+	0	NA	Intergenic	Intergenic	-75405	NM_001134742	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
179642	chr4	186587471	186587630	+	0	NA	TTS (NM_005245)	TTS (NM_005245)	-31983	NM_005958	4543		NM_005958	ENSG00000168412	MTNR1A	MEL-1A-R|MT1	melatonin receptor 1A	protein-coding
24315	chr1	236868621	236869480	+	0	NA	intron (NM_000254, intron 22 of 32)	intron (NM_000254, intron 22 of 32)	73758	NM_000254	4548		NM_000254	ENSG00000116984	MTR	HMAG|MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
221705	chr8	127181851	127182350	+	0	NA	Intergenic	Intergenic	15527	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
205462	chr7	17261051	17261650	+	0	NA	Intergenic	Intergenic	-37302	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
130732	chr2	86781921	86782280	+	0	NA	Intergenic	Intergenic	8813	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
66987	chr14	66715321	66715600	+	0	NA	intron (NM_020806, intron 2 of 22)	L1PBa|LINE|L1	207313	NM_001377516	10243		NM_020806	ENSG00000171723	GPHN	GEPH|GPH|GPHRYN|HKPX1|MOCODC	gephyrin	protein-coding
124306	chr19	57946071	57946230	+	0	NA	intron (NM_005773, intron 1 of 2)	intron (NM_005773, intron 1 of 2)	1556	NM_001375403	10172		NM_005773	ENSG00000152454	ZNF256	BMZF-3|BMZF3	zinc finger protein 256	protein-coding
91265	chr17	4006201	4006530	+	0	NA	3' UTR (NM_015113, exon 55 of 55)	3' UTR (NM_015113, exon 55 of 55)	29262	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
167817	chr3	133588351	133589080	+	0	NA	3' UTR (NM_017548, exon 5 of 5)	3' UTR (NM_017548, exon 5 of 5)	14281	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
50862	chr12	49175751	49176050	+	0	NA	Intergenic	AluSg|SINE|Alu	13180	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
102474	chr17	75731201	75731730	+	0	NA	intron (NM_001005619, intron 9 of 38)	MIR|SINE|MIR	6769	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
122585	chr19	49689421	49690080	+	0	NA	5' UTR (NM_001101340, exon 1 of 2)	5' UTR (NM_001101340, exon 1 of 2)	1065	NM_001101340	199800		NM_001101340	ENSG00000224420	ADM5	AM5|C19orf76	adrenomedullin 5 (putative)	protein-coding
152270	chr22	20276851	20277150	+	0	NA	Intergenic	Intergenic	-8682	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
170219	chr3	184169901	184170730	+	0	NA	intron (NM_004423, intron 14 of 14)	CpG	-4531	NM_001025205	1173		NM_004068	ENSG00000161203	AP2M1	AP50|CLAPM1|MRD60|mu2	adaptor related protein complex 2 subunit mu 1	protein-coding
104357	chr17	80994951	80995680	+	0	NA	intron (NM_024591, intron 3 of 7)	intron (NM_024591, intron 3 of 7)	3474	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
26272	chr10	14823201	14823550	+	0	NA	intron (NM_001029954, intron 3 of 3)	intron (NM_001029954, intron 3 of 3)	14662	NM_001029954	441549		NM_001029954	ENSG00000185267	CDNF	ARMETL1	cerebral dopamine neurotrophic factor	protein-coding
234359	chrX	15687021	15687430	+	0	NA	intron (NR_160544, intron 1 of 11)	MER20|DNA|hAT-Charlie	11767	NR_160544	114004397		NR_160544		CA5BP1-CA5B	-	CA5BP1-CA5B readthrough	ncRNA
190734	chr6	340301	340900	+	0	NA	intron (NR_104474, intron 3 of 5)	intron (NR_104474, intron 3 of 5)	48543	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
65327	chr14	50117771	50117930	+	0	NA	3' UTR (NM_006939, exon 23 of 23)	3' UTR (NM_006939, exon 23 of 23)	-1278	NR_049739	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
114748	chr19	13275321	13275830	+	0	NA	intron (NM_023035, intron 24 of 46)	intron (NM_023035, intron 24 of 46)	125164	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
201930	chr6	151415671	151416250	+	0	NA	intron (NM_001271937, intron 9 of 10)	L1MD2|LINE|L1	-24401	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
140577	chr2	233352351	233352830	+	0	NA	Intergenic	Intergenic	-1904	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
100859	chr17	64238651	64238750	+	0	NA	intron (NM_001288732, intron 1 of 11)	THE1C|LTR|ERVL-MaLR	-7966	NM_001288733	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
230857	chr9	129130271	129130630	+	0	NA	intron (NM_001271832, intron 3 of 8)	AluSx|SINE|Alu	18762	NM_001193397	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
42605	chr11	72101351	72101450	+	0	NA	intron (NM_017907, intron 1 of 4)	MIRc|SINE|MIR	1897	NM_017907	55004		NM_017907	ENSG00000149357	LAMTOR1	C11orf59|PDRO|Ragulator1|p18|p27RF-Rho	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding
41633	chr11	66475501	66476330	+	0	NA	exon (NM_001243135, exon 7 of 7)	exon (NM_001243135, exon 7 of 7)	4334	NR_120586	101928069		NR_120586	ENSG00000255517	DPP3-DT	-	DPP3 divergent transcript	ncRNA
233563	chrX	281221	281700	+	0	NA	promoter-TSS (NM_018390)	promoter-TSS (NM_018390)	79	NM_018390	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
187549	chr5	142776421	142776680	+	0	NA	intron (NM_001349547, intron 1 of 21)	L1MB7|LINE|L1	5323	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
228363	chr9	99076321	99077080	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-28413	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
37520	chr11	18614921	18615400	+	0	NA	exon (NM_194285, exon 3 of 6)	exon (NM_194285, exon 3 of 6)	15371	NR_038360	100506540		NM_001355570	ENSG00000247595	MISFA	Kastor|Polluks|SPTY2D1-AS1|SPTY2D1OS	mitochondrial sheath formation associated	protein-coding
192864	chr6	27238651	27238750	+	0	NA	Intergenic	Intergenic	-9001	NM_005865	10279		NM_005865	ENSG00000112812	PRSS16	TSSP	serine protease 16	protein-coding
57908	chr12	123462171	123462330	+	0	NA	intron (NM_180699, intron 1 of 1)	intron (NM_180699, intron 1 of 1)	2546	NM_180699	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
82739	chr16	21389901	21390100	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	35378	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
138312	chr2	203743701	203743900	+	0	NA	Intergenic	Intergenic	37161	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123512	chr19	54215801	54216000	+	0	NA	TTS (NM_001320960).8	TTS (NM_001320960).8	7107	NR_135494	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
191811	chr6	14622251	14622350	+	0	NA	Intergenic	Intergenic	-336846	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
99258	chr17	49719921	49720180	+	0	NA	intron (NM_030802, intron 4 of 7)	intron (NM_030802, intron 4 of 7)	-12086	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
76179	chr15	73221421	73221780	+	0	NA	intron (NM_001172623, intron 7 of 27)	L1PA3|LINE|L1	-78310	NR_162148	113219462		NR_162148		MIR12135	-	microRNA 12135	ncRNA
36906	chr11	10789871	10790030	+	0	NA	Intergenic	Intergenic	11658	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
190633	chr5	181209451	181210730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4894	NM_203293	81786		NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
3255	chr1	14332701	14332900	+	0	NA	Intergenic	Intergenic	87173	NR_149058	105376762		NR_149058	ENSG00000234593	KAZN-AS1	-	KAZN antisense RNA 1	ncRNA
71990	chr15	25813851	25814150	+	0	NA	intron (NM_024490, intron 1 of 20)	L1MEc|LINE|L1	34825	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
97325	chr17	43256371	43256800	+	0	NA	Intergenic	AluSp|SINE|Alu	-4566	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
43740	chr11	86066101	86066300	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	2884	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
126768	chr2	30249621	30250800	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	18676	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
17690	chr1	158095801	158096030	+	0	NA	3' UTR (NM_001286349, exon 13 of 13)	3' UTR (NM_001286349, exon 13 of 13)	44725	NR_033946	646268		NR_033946	ENSG00000231666	LINC01704	-	long intergenic non-protein coding RNA 1704	ncRNA
191536	chr6	11414521	11415050	+	0	NA	Intergenic	MER57D|LTR|ERV1	-32437	NR_073131	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
7535	chr1	34868101	34868300	+	0	NA	intron (NM_001080418, intron 9 of 11)	intron (NM_001080418, intron 9 of 11)	-8451	NM_001320261	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
176808	chr4	102533521	102534600	+	0	NA	intron (NM_001382625, intron 5 of 24)	intron (NM_001382625, intron 5 of 24)	-31574	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
97473	chr17	43772351	43772650	+	0	NA	intron (NM_004090, intron 2 of 2)	L2c|LINE|L2	6477	NM_004090	1845		NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
24203	chr1	236066501	236067240	+	0	NA	Intergenic	Intergenic	-1780	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
96276	chr17	39872501	39873000	+	0	NA	intron (NM_199321, intron 5 of 7)	intron (NM_199321, intron 5 of 7)	4548	NM_198844	124626		NM_198844	ENSG00000186075	ZPBP2	ZPBPL	zona pellucida binding protein 2	protein-coding
109577	chr19	902871	903030	+	0	NA	intron (NM_138774, intron 1 of 7)	AluSz|SINE|Alu	9466	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
5169	chr1	24932051	24933000	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-2249	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
78793	chr15	99443651	99444380	+	0	NA	Intergenic	Intergenic	-121402	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
30282	chr10	75212351	75212700	+	0	NA	intron (NM_003375, intron 4 of 10)	AluJo|SINE|Alu	2371	NM_001184783	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
71965	chr15	24954851	24955570	+	0	NA	5' UTR (NM_001349465, exon 1 of 11)	5' UTR (NM_001349465, exon 1 of 11)	223	NM_022804	8926		NM_005678	ENSG00000273173	SNURF	-	SNRPN upstream open reading frame	protein-coding
198881	chr6	109456921	109457980	+	0	NA	intron (NM_001286613, intron 1 of 24)	intron (NM_001286613, intron 1 of 24)	-1463	NM_001159291	64780		NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding
196399	chr6	43287151	43287650	+	0	NA	3' UTR (NM_032538, exon 15 of 15)	3' UTR (NM_032538, exon 15 of 15)	-10860	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
149859	chr21	35222321	35223150	+	0	NA	Intergenic	Intergenic	-173433	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
94655	chr17	30236701	30237280	+	0	NA	Intergenic	Intergenic	-1293	NM_001045	6532		NM_001045	ENSG00000108576	SLC6A4	5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT	solute carrier family 6 member 4	protein-coding
90381	chr17	1267651	1268830	+	0	NA	Intergenic	CpG	-2204	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
131382	chr2	96251871	96252030	+	0	NA	3' UTR (NM_001193304, exon 4 of 4)	3' UTR (NM_001193304, exon 4 of 4)	14047	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
82568	chr16	18767021	18768150	+	0	NA	Intergenic	MIR|SINE|MIR	22749	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
203701	chr7	1038521	1039530	+	0	NA	intron (NM_032350, intron 2 of 4)	SVA_F|Retroposon|SVA	-5521	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
17665	chr1	157659751	157659850	+	0	NA	Intergenic	MER88|LTR|ERVL	40969	NR_135217	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
96083	chr17	39608301	39608750	+	0	NA	promoter-TSS (NM_006160)	promoter-TSS (NM_006160)	-605	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
60751	chr13	44768271	44768880	+	0	NA	Intergenic	Intergenic	41055	NR_038433	144817		NR_038433	ENSG00000235097	LINC00330	NCRNA00330	long intergenic non-protein coding RNA 330	ncRNA
28833	chr10	62380021	62380480	+	0	NA	intron (NM_199450, intron 2 of 4)	Tigger2a|DNA|TcMar-Tigger	-5123	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
62844	chr13	109790921	109791540	+	0	NA	Intergenic	Intergenic	-4647	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
152576	chr22	21121871	21122230	+	0	NA	non-coding (NR_037566, exon 6 of 6)	non-coding (NR_037566, exon 6 of 6)	19034	NR_037566	400892		NM_207474	ENSG00000291044	BCRP2	BCR-2|BCR2|BCRL2	BCR pseudogene 2	pseudo
110470	chr19	2017071	2018000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1821	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
175091	chr4	54109121	54109380	+	0	NA	Intergenic	CpG	9087	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
132554	chr2	106205371	106205750	+	0	NA	Intergenic	Intergenic	-11259	NM_001377504	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
121263	chr19	46695701	46696100	+	0	NA	intron (NM_001079881, intron 10 of 18)	AluSx1|SINE|Alu	13454	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
126796	chr2	30334801	30335430	+	0	NA	Intergenic	Intergenic	-11531	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
41354	chr11	65964271	65964630	+	0	NA	intron (NM_005146, intron 2 of 19)	intron (NM_005146, intron 2 of 19)	2716	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
115223	chr19	14499801	14500180	+	0	NA	Intergenic	AluJr|SINE|Alu	-3841	NM_202494	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
79399	chr16	670071	670230	+	0	NA	exon (NM_001352279, exon 5 of 17)	exon (NM_001352279, exon 5 of 17)	2018	NM_001352284	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
26625	chr10	22421001	22421330	+	0	NA	Intergenic	Intergenic	16764	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
135271	chr2	159776551	159776650	+	0	NA	intron (NM_014880, intron 5 of 5)	intron (NM_014880, intron 5 of 5)	21608	NM_014880	9936		NM_014880	ENSG00000241399	CD302	BIMLEC|CLEC13A|DCL-1|DCL1	CD302 molecule	protein-coding
115347	chr19	15197401	15198350	+	0	NA	intron (NM_000435, intron 1 of 32)	intron (NM_000435, intron 1 of 32)	3120	NM_000435	4854		NM_000435	ENSG00000074181	NOTCH3	CADASIL|CADASIL1|CASIL|IMF2|LMNS	notch receptor 3	protein-coding
182776	chr5	68381101	68381650	+	0	NA	Intergenic	Intergenic	88798	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
145862	chr20	45912871	45913430	+	0	NA	promoter-TSS (NM_182676)	promoter-TSS (NM_182676)	-786	NM_182676	5360		NM_006227	ENSG00000100979	PLTP	BPIFE|HDLCQ9	phospholipid transfer protein	protein-coding
105758	chr18	2767301	2767700	+	0	NA	intron (NM_015295, intron 37 of 47)	Tigger3a|DNA|TcMar-Tigger	-79506	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
68933	chr14	91382021	91382430	+	0	NA	intron (NM_001080414, intron 3 of 29)	MER117|DNA|hAT-Charlie	35595	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
22944	chr1	225988471	225988630	+	0	NA	intron (NM_152608, intron 5 of 6)	AluSg|SINE|Alu	10793	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
18788	chr1	167552251	167552350	+	0	NA	intron (NM_003851, intron 1 of 3)	intron (NM_003851, intron 1 of 3)	1462	NM_003851	8804		NM_003851	ENSG00000143162	CREG1	CREG	cellular repressor of E1A stimulated genes 1	protein-coding
109320	chr19	586601	586800	+	0	NA	Intergenic	Intergenic	-3181	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
187988	chr5	149521151	149521480	+	0	NA	intron (NM_001892, intron 3 of 9)	AluJo|SINE|Alu	29050	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
124494	chr19	58569971	58570350	+	0	NA	intron (NM_198055, intron 3 of 5)	intron (NM_198055, intron 3 of 5)	3175	NM_001267033	7593		NM_003422	ENSG00000099326	MZF1	MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6	myeloid zinc finger 1	protein-coding
61730	chr13	74127101	74127680	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	6539	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
196093	chr6	42321851	42322550	+	0	NA	intron (NM_033502, intron 3 of 17)	HAL1|LINE|L1	-104339	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
59651	chr13	28358001	28358400	+	0	NA	intron (NM_002019, intron 14 of 29)	MIRb|SINE|MIR	136928	NM_002019	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
7837	chr1	36318551	36318730	+	0	NA	intron (NM_024676, intron 7 of 12)	AluY|SINE|Alu	5005	NM_001304762	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
102961	chr17	76706601	76707180	+	0	NA	intron (NM_001008528, intron 1 of 3)	L1MC4|LINE|L1	2707	NR_130926	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
128962	chr2	64641521	64641980	+	0	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	12163	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
46762	chr11	129815521	129816700	+	0	NA	intron (NM_138788, intron 1 of 5)	CpG	262	NM_138788	120224		NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
101914	chr17	74456001	74456400	+	0	NA	Intergenic	Intergenic	-10173	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
227606	chr9	92737451	92737750	+	0	NA	intron (NM_001003800, intron 1 of 6)	intron (NM_001003800, intron 1 of 6)	27233	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
15106	chr1	148605071	148605230	+	0	NA	3' UTR (NM_001364007, exon 5 of 5)	3' UTR (NM_001364007, exon 5 of 5)	-9433	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
47299	chr12	1666571	1667330	+	0	NA	Intergenic	Intergenic	-6570	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
18123	chr1	160731651	160731750	+	0	NA	Intergenic	L1PA7|LINE|L1	-7357	NM_001282594	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
235455	chrX	46544951	46546450	+	0	NA	promoter-TSS (NM_001039891)	promoter-TSS (NM_001039891)	210	NR_015378	401588		NR_015378	ENSG00000230844	ZNF674-AS1	-	ZNF674 antisense RNA 1 (head to head)	ncRNA
36337	chr11	3882471	3883150	+	0	NA	intron (NM_001382571, intron 1 of 9)	L1MC|LINE|L1	26748	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
127100	chr2	37625951	37626680	+	0	NA	Intergenic	Intergenic	45327	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
63643	chr14	20934101	20934300	+	0	NA	Intergenic	Intergenic	14859	NR_033909	643332		NR_033909		RNASE2CP	ECRP	ribonuclease A family member 2C, pseudogene	pseudo
112682	chr19	7037471	7037630	+	0	NA	TTS (NM_001164419)	TTS (NM_001164419)	2623	NM_001164419	653656		NM_001164419	ENSG00000205718	MBD3L4	-	methyl-CpG binding domain protein 3 like 4	protein-coding
172215	chr4	1305951	1306650	+	0	NA	intron (NR_123716, intron 1 of 6)	L1M5|LINE|L1	-3143	NM_001297432	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
197207	chr6	63635251	63637000	+	0	NA	promoter-TSS (NM_001290260)	promoter-TSS (NM_001290260)	323	NM_001290259	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
238913	chrX	154723371	154723730	+	0	NA	intron (NR_104114, intron 1 of 8)	intron (NR_104114, intron 1 of 8)	27527	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
156159	chr22	40203251	40204350	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	25875	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
234053	chrX	7069121	7069400	+	0	NA	intron (NM_001178135, intron 3 of 3)	intron (NM_001178135, intron 3 of 3)	-78030	NM_001320750	412		NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase	protein-coding
167011	chr3	126082551	126082830	+	0	NA	intron (NM_017836, intron 1 of 10)	intron (NM_017836, intron 1 of 10)	1434	NM_001008486	54946		NM_017836	ENSG00000114544	SLC41A3	SLC41A1-L2	solute carrier family 41 member 3	protein-coding
37671	chr11	27184021	27184300	+	0	NA	intron (NR_125767, intron 2 of 4)	intron (NR_125767, intron 2 of 4)	34608	NR_125768	103695435		NR_125766	ENSG00000254560	BBOX1-AS1	-	BBOX1 antisense RNA 1	ncRNA
208528	chr7	70614271	70614430	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-517794	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
157749	chr22	46661371	46661850	+	0	NA	intron (NM_001366660, intron 5 of 17)	intron (NM_001366660, intron 5 of 17)	41224	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
150321	chr21	42026801	42027700	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	4981	NR_027273	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
2428	chr1	9601801	9602930	+	0	NA	3' UTR (NM_001010866, exon 6 of 6)	3' UTR (NM_001010866, exon 6 of 6)	13454	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
238282	chrX	149474851	149475400	+	0	NA	Intergenic	AluSx|SINE|Alu	30181	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
231983	chr9	133275021	133275700	+	0	NA	promoter-TSS (NM_020469)	promoter-TSS (NM_020469)	-159	NM_020469	28		NM_020469	ENSG00000175164	ABO	A3GALNT|A3GALT1|GTB|NAGAT	ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase	protein-coding
227956	chr9	94858801	94859330	+	0	NA	intron (NM_032823, intron 5 of 14)	MLT1A1|LTR|ERVL-MaLR	49103	NR_031755	100313780		NR_031755	ENSG00000252153	MIR2278	mir-2278	microRNA 2278	ncRNA
140320	chr2	232507701	232507900	+	0	NA	Intergenic	Intergenic	-12588	NM_001195129	646960		NM_001195129	ENSG00000237412	PRSS56	MCOP6	serine protease 56	protein-coding
102855	chr17	76490521	76491130	+	0	NA	intron (NR_164786, intron 1 of 19)	intron (NR_164786, intron 1 of 19)	10598	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
69524	chr14	96362801	96364600	+	0	NA	promoter-TSS (NM_018036)	promoter-TSS (NM_018036)	174	NM_016472	51527		NM_016472	ENSG00000100744	GSKIP	C14orf129|HSPC210	GSK3B interacting protein	protein-coding
168163	chr3	139427571	139427880	+	0	NA	intron (NR_121609, intron 3 of 4)	intron (NR_121609, intron 3 of 4)	37922	NR_121608	100507291		NR_121608	ENSG00000248932	COPB2-DT	-	COPB2 divergent transcript	ncRNA
108984	chr18	79686151	79686450	+	0	NA	intron (NM_001202504, intron 1 of 12)	intron (NM_001202504, intron 1 of 12)	4870	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
133637	chr2	126956551	126957050	+	0	NA	Intergenic	L1P3|LINE|L1	57910	NR_136239	101929926		NM_001322244	ENSG00000237524	TEX51	-	testis expressed 51	protein-coding
203639	chr7	969001	969550	+	0	NA	3' UTR (NM_001031617, exon 3 of 3)	3' UTR (NM_001031617, exon 3 of 3)	6274	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
228069	chr9	96217851	96218650	+	0	NA	Intergenic	CpG	-28213	NR_146524	105376162		NR_146524	ENSG00000232283	HSD17B3-AS1	-	HSD17B3 antisense RNA 1	ncRNA
86794	chr16	67816301	67817350	+	0	NA	intron (NM_001288994, intron 2 of 10)	intron (NM_001288994, intron 2 of 10)	9936	NM_001351158	55815		NM_018430	ENSG00000102904	TSNAXIP1	TXI1	translin associated factor X interacting protein 1	protein-coding
9600	chr1	52353221	52353480	+	0	NA	3' UTR (NM_032449, exon 24 of 24)	3' UTR (NM_032449, exon 24 of 24)	12855	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
231212	chr9	129954851	129955630	+	0	NA	intron (NM_001363755, intron 6 of 15)	intron (NM_001363755, intron 6 of 15)	85635	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
40506	chr11	64270701	64272530	+	0	NA	exon (NM_004322, exon 2 of 3)	exon (NM_004322, exon 2 of 3)	1084	NM_001378084	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
70807	chr14	103546051	103546150	+	0	NA	Intergenic	Intergenic	16220	NM_001015049	9529		NM_004873	ENSG00000166170	BAG5	BAG-5|CMD2F	BAG cochaperone 5	protein-coding
152549	chr22	20998551	20999050	+	0	NA	TTS (NM_001008695)	TTS (NM_001008695)	-3122	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
97095	chr17	42428221	42429130	+	0	NA	Intergenic	Intergenic	-5419	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
121686	chr19	47517251	47517630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2377	NR_038456	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
166638	chr3	119690021	119690280	+	0	NA	Intergenic	PRIMAX-int|LTR|ERV1	-12744	NM_001382002	10063		NM_005694	ENSG00000138495	COX17	-	cytochrome c oxidase copper chaperone COX17	protein-coding
137653	chr2	197427401	197427600	+	0	NA	intron (NM_001005526, intron 1 of 4)	intron (NM_001005526, intron 1 of 4)	7528	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
124006	chr19	55460121	55460430	+	0	NA	intron (NM_024710, intron 1 of 5)	L1ME4b|LINE|L1	1367	NM_001136201	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
150827	chr21	44016621	44017180	+	0	NA	intron (NM_003274, intron 1 of 22)	AluY|SINE|Alu	4591	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
106292	chr18	12775651	12777730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-27268	NR_110763	100996324		NR_110763		LINC01882	-	long intergenic non-protein coding RNA 1882	ncRNA
54945	chr12	96234571	96234730	+	0	NA	intron (NM_005230, intron 2 of 4)	MIRb|SINE|MIR	-20848	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
221180	chr8	120649571	120649730	+	0	NA	intron (NM_021021, intron 2 of 6)	L1PA2|LINE|L1	-111603	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
92263	chr17	8016481	8017250	+	0	NA	intron (NM_000180, intron 19 of 19)	MER91C|DNA|hAT-Tip100	14250	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
230678	chr9	128719621	128720400	+	0	NA	TTS (NM_001318015)	TTS (NM_001318015)	4117	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
148743	chr21	7568621	7569880	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	122951	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
67682	chr14	73141801	73142830	+	0	NA	intron (NM_007318, intron 1 of 11)	intron (NM_007318, intron 1 of 11)	5808	NM_007318	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
19915	chr1	184341071	184341230	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-45879	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
95340	chr17	35764121	35765250	+	0	NA	3' UTR (NM_145272, exon 3 of 3)	3' UTR (NM_145272, exon 3 of 3)	3798	NM_145272	146853		NM_145272	ENSG00000270806	C17orf50	-	chromosome 17 open reading frame 50	protein-coding
188271	chr5	151096971	151097530	+	0	NA	Intergenic	MIR3|SINE|MIR	-9565	NM_001252390	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
120583	chr19	45003671	45004430	+	0	NA	intron (NM_006509, intron 2 of 10)	AluSx1|SINE|Alu	2586	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
21928	chr1	207854121	207854380	+	0	NA	Intergenic	Intergenic	-31547	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
228110	chr9	96566021	96567420	+	0	NA	intron (NM_001351570, intron 1 of 13)	CpG	111	NM_001351569	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
137903	chr2	200866171	200866330	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1592	NR_027856	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
89553	chr16	89240571	89242880	+	0	NA	Intergenic	AluJr|SINE|Alu	24022	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
129299	chr2	68514971	68515530	+	0	NA	intron (NM_173545, intron 5 of 9)	intron (NM_173545, intron 5 of 9)	47665	NM_173545	200558		NM_173545	ENSG00000169621	APLF	APFL|C2orf13|PALF|Xip1|ZCCHH1	aprataxin and PNKP like factor	protein-coding
97060	chr17	42368721	42369200	+	0	NA	intron (NM_001369516, intron 1 of 23)	L1PA14|LINE|L1	19482	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
94722	chr17	30718921	30720080	+	0	NA	intron (NR_144394, intron 1 of 8)	L2a|LINE|L2	9892	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
128616	chr2	61176451	61178240	+	0	NA	promoter-TSS (NR_152211)	promoter-TSS (NR_152211)	-73	NR_152211	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
180745	chr5	32003251	32003350	+	0	NA	intron (NM_178140, intron 5 of 24)	(AC)n|Simple_repeat|Simple_repeat	-67141	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
154329	chr22	32144001	32145200	+	0	NA	Intergenic	Intergenic	14703	NM_001010859	150297		NM_001010859	ENSG00000205856	C22orf42	dJ90G24.6	chromosome 22 open reading frame 42	protein-coding
111157	chr19	3307471	3307700	+	0	NA	Intergenic	Intergenic	-52045	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
160066	chr3	18681571	18682180	+	0	NA	Intergenic	Intergenic	-236283	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
14050	chr1	120768171	120768600	+	0	NA	intron (NR_157049, intron 2 of 4)	L1MEb|LINE|L1	-37171	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
194703	chr6	33701471	33701830	+	0	NA	intron (NM_032340, intron 1 of 3)	intron (NM_032340, intron 1 of 3)	3522	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
209453	chr7	76448651	76448950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12855	NM_020892	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
236994	chrX	101624901	101625280	+	0	NA	exon (NM_016607, exon 5 of 5)	exon (NM_016607, exon 5 of 5)	1729	NM_177948	51566		NM_016607	ENSG00000102401	ARMCX3	ALEX3|GASP6|dJ545K15.2	armadillo repeat containing X-linked 3	protein-coding
213860	chr7	142306451	142306750	+	0	NA	Intergenic	Intergenic	-34351	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
36139	chr11	3127651	3127750	+	0	NA	intron (NM_145638, intron 2 of 20)	intron (NM_145638, intron 2 of 20)	37610	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
115841	chr19	16520621	16521080	+	0	NA	exon (NM_006387, exon 13 of 17)	exon (NM_006387, exon 13 of 17)	21587	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
194954	chr6	35294021	35294930	+	0	NA	exon (NM_001292032, exon 12 of 13)	exon (NM_001292032, exon 12 of 13)	-3343	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
173919	chr4	25309921	25310180	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-2724	NM_001318148	29063		NM_014150	ENSG00000168228	ZCCHC4	HSPC052|ZGRF4	zinc finger CCHC-type containing 4	protein-coding
198014	chr6	90108971	90109400	+	0	NA	intron (NM_021813, intron 4 of 8)	L2-3_Crp|LINE|L2	187658	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
136144	chr2	174252601	174252800	+	0	NA	Intergenic	Intergenic	-4168	NM_013341	29789		NM_013341	ENSG00000138430	OLA1	DOC45|GBP45|GTBP9|GTPBP9|PTD004	Obg like ATPase 1	protein-coding
50045	chr12	44500371	44501000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	374976	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
148644	chr21	6083721	6084000	+	0	NA	TTS (NR_152722)	TTS (NR_152722)	7805	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
187576	chr5	142800471	142801750	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	29883	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
176977	chr4	104895571	104895730	+	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-250225	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
75293	chr15	65182351	65182650	+	0	NA	intron (NM_006660, intron 1 of 13)	Charlie4a|DNA|hAT-Charlie	2842	NR_133680	10845		NM_006660	ENSG00000166855	CLPX	EPP2	caseinolytic mitochondrial matrix peptidase chaperone subunit X	protein-coding
142826	chr20	17503001	17503200	+	0	NA	intron (NM_001195, intron 5 of 7)	AluJb|SINE|Alu	28279	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
220815	chr8	102795171	102795830	+	0	NA	Intergenic	Intergenic	-11322	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
65097	chr14	41600601	41600980	+	0	NA	Intergenic	Intergenic	-6066	NM_001346173	145581		NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
137754	chr2	197952751	197952850	+	0	NA	intron (NM_006226, intron 1 of 5)	THE1B|LTR|ERVL-MaLR	148207	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
24726	chr1	247639251	247639630	+	0	NA	Intergenic	CpG	33601	NM_001005487	441933		NM_001005487	ENSG00000197437	OR13G1	OR1-37	olfactory receptor family 13 subfamily G member 1	protein-coding
85637	chr16	55701701	55701950	+	0	NA	intron (NM_001043, intron 12 of 13)	intron (NM_001043, intron 12 of 13)	-23100	NR_033740	390732		NR_033740		CES1P2	-	carboxylesterase 1 pseudogene 2	pseudo
194604	chr6	33508471	33508630	+	0	NA	Intergenic	MIR|SINE|MIR	53974	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
28180	chr10	43943171	43943530	+	0	NA	intron (NR_136147, intron 3 of 4)	intron (NR_136147, intron 3 of 4)	30948	NR_136148	283033		NR_033846		LINC00841	-	long intergenic non-protein coding RNA 841	ncRNA
35545	chr11	1604771	1604930	+	0	NA	Intergenic	Intergenic	3613	NM_001012708	387266		NM_001012708	ENSG00000196224	KRTAP5-3	KRTAP5-9|KRTAP5.3	keratin associated protein 5-3	protein-coding
191084	chr6	3742421	3743430	+	0	NA	intron (NM_183373, intron 1 of 4)	intron (NM_183373, intron 1 of 4)	8788	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
147478	chr20	59142121	59142630	+	0	NA	intron (NM_001384354, intron 1 of 7)	intron (NM_001384354, intron 1 of 7)	18987	NM_001384354	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
37869	chr11	33808251	33809150	+	0	NA	Intergenic	MIR3|SINE|MIR	34001	NR_120550	101928440		NR_120550	ENSG00000254508	FBXO3-DT	FBXO3-AS1	FBXO3 divergent transcript	ncRNA
714	chr1	1430271	1430630	+	0	NA	non-coding (NR_125994, exon 2 of 2)	non-coding (NR_125994, exon 2 of 2)	4123	NR_125996	102724312		NR_125994		LINC01770	-	long intergenic non-protein coding RNA 1770	ncRNA
53164	chr12	57944221	57944480	+	0	NA	intron (NM_001320408, intron 1 of 5).2	intron (NM_001320408, intron 1 of 5).2	2783	NM_033276	91419		NM_033276	ENSG00000166896	ATP23	KUB3|XRCC6BP1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding
72345	chr15	31334001	31334480	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	7405	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
79197	chr16	336221	336950	+	0	NA	intron (NM_181050, intron 2 of 9)	AluSg|SINE|Alu	16138	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
10950	chr1	84166571	84167230	+	0	NA	intron (NM_001375580, intron 1 of 8)	intron (NM_001375580, intron 1 of 8)	2206	NM_001375577	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
93498	chr17	18969171	18969600	+	0	NA	exon (NM_001270649, exon 7 of 14)	exon (NM_001270649, exon 7 of 14)	17220	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
64469	chr14	24265771	24265930	+	0	NA	intron (NM_182836, intron 16 of 16)	intron (NM_182836, intron 16 of 16)	-2673	NM_000359	7051		NM_000359	ENSG00000092295	TGM1	ARCI1|ICR2|KTG|LI|LI1|TGASE|TGK	transglutaminase 1	protein-coding
96756	chr17	41705171	41705700	+	0	NA	Intergenic	(ATGA)n|Simple_repeat|Simple_repeat	-6896	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
21364	chr1	205061251	205061950	+	0	NA	intron (NR_144350, intron 8 of 22)	intron (NR_144350, intron 8 of 22)	18388	NM_005076	6900		NM_005076	ENSG00000184144	CNTN2	AXT|EPEO5|FAME5|TAG-1|TAX|TAX1	contactin 2	protein-coding
152988	chr22	23147551	23147650	+	0	NA	intron (NM_004914, intron 2 of 10)	AluJr4|SINE|Alu	2123	NR_146295	9609		NM_004914	ENSG00000100228	RAB36	-	RAB36, member RAS oncogene family	protein-coding
32194	chr10	101710021	101710280	+	0	NA	Intergenic	Intergenic	-14855	NM_001323541	6468		NM_022039	ENSG00000107829	FBXW4	DAC|FBW4|FBWD4|SHFM3|SHSF3	F-box and WD repeat domain containing 4	protein-coding
222819	chr8	142474451	142474550	+	0	NA	intron (NM_001702, intron 2 of 30)	intron (NM_001702, intron 2 of 30)	24851	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
191317	chr6	6811171	6811960	+	0	NA	Intergenic	Intergenic	-188739	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
15288	chr1	149830951	149831050	+	0	NA	Intergenic	Intergenic	-1657	NR_168447	554313		NM_001034077	ENSG00000270276	H4C15	H4-16|H4/o|H4C1|H4C11|H4C12|H4C13|H4C14|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST2H4B	H4 clustered histone 15	protein-coding
104965	chr17	81966751	81967130	+	0	NA	Intergenic	Intergenic	-5753	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
161234	chr3	39209621	39210280	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-17355	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
66386	chr14	61490671	61491280	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	79219	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
178680	chr4	152523051	152523150	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	11933	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
99778	chr17	51121701	51122750	+	0	NA	Intergenic	Intergenic	-1357	NM_001130528	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
157776	chr22	46748451	46748630	+	0	NA	Intergenic	Intergenic	-10288	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
77631	chr15	85441751	85442250	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	61397	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
94214	chr17	28612471	28612630	+	0	NA	intron (NM_001174103, intron 5 of 11)	intron (NM_001174103, intron 5 of 11)	1635	NM_001174103	124923		NM_144610	ENSG00000167524	RSKR	SGK494	ribosomal protein S6 kinase related	protein-coding
12422	chr1	101438451	101438600	+	0	NA	Intergenic	L3|LINE|CR1	114688	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
237302	chrX	115874651	115874750	+	0	NA	intron (NR_147172, intron 2 of 2)	CpG	33736	NR_147172	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
172493	chr4	2246521	2247580	+	0	NA	TTS (NM_006454)	TTS (NM_006454)	3106	NR_039964	100616358		NR_039964	ENSG00000284276	MIR4800	mir-4800	microRNA 4800	ncRNA
60271	chr13	40611621	40612080	+	0	NA	intron (NM_002015, intron 1 of 2)	AluJb|SINE|Alu	54791	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
93105	chr17	17679901	17680230	+	0	NA	Intergenic	MIRb|SINE|MIR	-1393	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
225417	chr9	35061701	35062250	+	0	NA	intron (NM_001354927, intron 9 of 16)	intron (NM_001354927, intron 9 of 16)	10333	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
186057	chr5	134073151	134073750	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-41231	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
76377	chr15	74607051	74607550	+	0	NA	Intergenic	Intergenic	-1072	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
171610	chr3	197393871	197394030	+	0	NA	Intergenic	Intergenic	-94629	NM_001366203	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
198387	chr6	105620921	105621250	+	0	NA	Intergenic	Intergenic	-218003	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
178569	chr4	151125771	151125930	+	0	NA	intron (NM_001378121, intron 20 of 20)	AluSx4|SINE|Alu	22023	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
219045	chr8	65761921	65762600	+	0	NA	intron (NM_001242318, intron 3 of 12)	intron (NM_001242318, intron 3 of 12)	26797	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
11931	chr1	93708901	93709300	+	0	NA	intron (NM_001261408, intron 2 of 13)	intron (NM_001261408, intron 2 of 13)	-27263	NM_003567	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
15939	chr1	151824271	151824750	+	0	NA	intron (NM_005060, intron 2 of 10)	intron (NM_005060, intron 2 of 10)	1586	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
104851	chr17	81843471	81843880	+	0	NA	3' UTR (NM_000918, exon 11 of 11)	3' UTR (NM_000918, exon 11 of 11)	-8625	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
61828	chr13	75802271	75802500	+	0	NA	intron (NM_001330583, intron 5 of 28)	intron (NM_001330583, intron 5 of 28)	41724	NM_015842	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
3833	chr1	16900751	16902030	+	0	NA	Intergenic	Intergenic	5410	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
150545	chr21	43075951	43076050	+	0	NA	promoter-TSS (NM_001354009).2	promoter-TSS (NM_001354009).2	-55	NM_001354014	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
76668	chr15	75695271	75696100	+	0	NA	intron (NM_001897, intron 1 of 9)	intron (NM_001897, intron 1 of 9)	17163	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
79029	chr16	67521	67780	+	0	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	4981	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
26752	chr10	22704201	22706150	+	0	NA	intron (NM_005028, intron 1 of 9)	L2a|LINE|L2	8933	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
185312	chr5	126775301	126775550	+	0	NA	intron (NR_134485, intron 1 of 3)	intron (NR_134485, intron 1 of 3)	1061	NR_134485	102723557		NR_134485	ENSG00000251072	LMNB1-DT	-	LMNB1 divergent transcript	ncRNA
19727	chr1	181108401	181109680	+	0	NA	Intergenic	Intergenic	20340	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
51234	chr12	50824871	50825700	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	-17641	NM_182559	283471		NM_182559	ENSG00000186452	TMPRSS12	CT151	transmembrane serine protease 12	protein-coding
216432	chr8	19456921	19457280	+	0	NA	intron (NR_148900, intron 4 of 9)	L3|LINE|CR1	143124	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
161380	chr3	41167751	41168050	+	0	NA	Intergenic	Intergenic	-31605	NM_001330729	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
225591	chr9	36138771	36139400	+	0	NA	intron (NM_001287014, intron 1 of 1)	intron (NM_001287014, intron 1 of 1)	2300	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
99941	chr17	57259051	57259150	+	0	NA	intron (NM_170721, intron 3 of 9)	intron (NM_170721, intron 3 of 9)	2081	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
51452	chr12	52047521	52047980	+	0	NA	intron (NM_001202233, intron 2 of 7)	intron (NM_001202233, intron 2 of 7)	-3652	NM_002135	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
174211	chr4	37675701	37676300	+	0	NA	intron (NM_001085400, intron 1 of 6)	intron (NM_001085400, intron 1 of 6)	10376	NM_001085399	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
155425	chr22	38450301	38450950	+	0	NA	intron (NM_152868, intron 1 of 1)	intron (NM_152868, intron 1 of 1)	4574	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
182749	chr5	68281401	68281600	+	0	NA	intron (NM_181523, intron 7 of 15)	intron (NM_181523, intron 7 of 15)	-7019	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
65129	chr14	44963871	44964480	+	0	NA	exon (NM_001308120, exon 1 of 20)	exon (NM_001308120, exon 1 of 20)	1985	NM_001308120	23116		NM_015091	ENSG00000198718	TOGARAM1	FAM179B|JBTS37|KIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding
154023	chr22	30440851	30441280	+	0	NA	Intergenic	LTR8|LTR|ERV1	8379	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
236129	chrX	57902701	57902900	+	0	NA	Intergenic	Intergenic	7658	NM_007156	7789		NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger X-linked duplicated A	protein-coding
61121	chr13	48500771	48501500	+	0	NA	intron (NR_147985, intron 9 of 11)	L1ME1|LINE|L1	31945	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
106127	chr18	9234421	9234680	+	0	NA	intron (NM_001204056, intron 7 of 11)	L1MA4A|LINE|L1	96987	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
23533	chr1	229155501	229155900	+	0	NA	Intergenic	Intergenic	19101	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
117328	chr19	19518901	19519500	+	0	NA	intron (NM_015965, intron 1 of 4)	intron (NM_015965, intron 1 of 4)	2975	NM_015965	51079		NM_015965	ENSG00000186010	NDUFA13	B16.6|CDA016|CGI-39|GRIM-19|GRIM19|MC1DN28	NADH:ubiquinone oxidoreductase subunit A13	protein-coding
160098	chr3	18988571	18989100	+	0	NA	Intergenic	Intergenic	-159675	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
98007	chr17	45315521	45315780	+	0	NA	intron (NM_003954, intron 1 of 15)	intron (NM_003954, intron 1 of 15)	1370	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
168310	chr3	141560521	141560780	+	0	NA	intron (NM_006506, intron 9 of 23)	intron (NM_006506, intron 9 of 23)	73623	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
167884	chr3	136071371	136071530	+	0	NA	intron (NM_002718, intron 6 of 13)	intron (NM_002718, intron 6 of 13)	48708	NM_181897	5523		NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
230351	chr9	128030871	128031830	+	0	NA	Intergenic	AluSx|SINE|Alu	35970	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
128134	chr2	48341421	48341750	+	0	NA	intron (NM_001375445, intron 3 of 7)	intron (NM_001375445, intron 3 of 7)	26903	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
80884	chr16	3656101	3656500	+	0	NA	intron (NM_005223, intron 4 of 8)	intron (NM_005223, intron 4 of 8)	1596	NM_001351825	1773		NM_005223	ENSG00000213918	DNASE1	DNL1|DRNI	deoxyribonuclease 1	protein-coding
31794	chr10	98339721	98340700	+	0	NA	Intergenic	Intergenic	55097	NR_031619	100302133		NR_031619	ENSG00000284415	MIR1287	MIRN1287|hsa-mir-1287|mir-1287	microRNA 1287	ncRNA
176999	chr4	105329251	105329350	+	0	NA	intron (NR_126420, intron 2 of 5)	intron (NR_126420, intron 2 of 5)	23581	NR_126420	104384744		NR_126420		TET2-AS1	-	TET2 antisense RNA 1	ncRNA
208739	chr7	73451751	73452350	+	0	NA	intron (NM_001370402, intron 13 of 18)	intron (NM_001370402, intron 13 of 18)	18272	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
8412	chr1	40416721	40417380	+	0	NA	exon (NM_001198979, exon 9 of 10)	exon (NM_001198979, exon 9 of 10)	20250	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
138737	chr2	213283721	213285100	+	0	NA	promoter-TSS (NR_047660)	promoter-TSS (NR_047660)	31	NM_001025436	79582		NM_024532	ENSG00000144451	SPAG16	PF20|WDR29	sperm associated antigen 16	protein-coding
59157	chr13	21579521	21580350	+	0	NA	intron (NM_152726, intron 1 of 11)	intron (NM_152726, intron 1 of 11)	24235	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
229074	chr9	114356001	114356400	+	0	NA	intron (NM_001317952, intron 12 of 20)	intron (NM_001317952, intron 12 of 20)	26331	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
45215	chr11	117849801	117850080	+	0	NA	intron (NM_001164832, intron 1 of 8)	LTR31|LTR|ERV1	-21851	NM_021603	486		NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
64593	chr14	26597971	26598530	+	0	NA	promoter-TSS (NR_147061)	promoter-TSS (NR_147061)	-217	NM_001366390	4857		NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding
42573	chr11	71996971	71997530	+	0	NA	non-coding (NR_024148, exon 9 of 9)	non-coding (NR_024148, exon 9 of 9)	-1659	NM_001039660	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
96552	chr17	40399121	40399400	+	0	NA	intron (NM_001067, intron 24 of 34)	intron (NM_001067, intron 24 of 34)	18636	NM_001067	7153		NM_001067	ENSG00000131747	TOP2A	TOP2|TOP2alpha|TOPIIA|TP2A	DNA topoisomerase II alpha	protein-coding
149698	chr21	33968001	33968530	+	0	NA	intron (NR_038883, intron 2 of 2)	MLT1J|LTR|ERVL-MaLR	-8117	NR_134561	101928126		NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
93733	chr17	19724201	19725500	+	0	NA	Intergenic	CpG	-5871	NR_135624	146802		NM_152908	ENSG00000180638	SLC47A2	MATE2|MATE2-B|MATE2-K|MATE2K	solute carrier family 47 member 2	protein-coding
81337	chr16	4766201	4767530	+	0	NA	intron (NM_021646, intron 1 of 5)	CpG	297	NM_021646	26048		NM_021646	ENSG00000103199	ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
157572	chr22	45972521	45972930	+	0	NA	intron (NM_058238, intron 1 of 3)	CpG	4437	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
1069	chr1	1914051	1915280	+	0	NA	promoter-TSS (NM_001330313)	promoter-TSS (NM_001330313)	-595	NM_001330313	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
55253	chr12	102059201	102060030	+	0	NA	intron (NM_001301107, intron 2 of 6)	intron (NM_001301107, intron 2 of 6)	2376	NM_016053	51019		NM_016053	ENSG00000120860	WASHC3	CCDC53|CGI-116	WASH complex subunit 3	protein-coding
112033	chr19	5122901	5123100	+	0	NA	intron (NM_015015, intron 11 of 22)	intron (NM_015015, intron 11 of 22)	153887	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
120055	chr19	42065551	42065650	+	0	NA	intron (NM_001301030, intron 1 of 18)	MSR1|Satellite|Satellite	205	NM_002088	2901		NM_002088	ENSG00000105737	GRIK5	EAA2|GRIK2|GluK5|KA2	glutamate ionotropic receptor kainate type subunit 5	protein-coding
110335	chr19	1870851	1871280	+	0	NA	Intergenic	Intergenic	-7486	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
238105	chrX	136619821	136620290	+	0	NA	Intergenic	Intergenic	-19488	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
96044	chr17	39453001	39453430	+	0	NA	Intergenic	Intergenic	-1952	NM_004774	5469		NM_004774	ENSG00000125686	MED1	CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2	mediator complex subunit 1	protein-coding
122353	chr19	49333271	49334300	+	0	NA	Intergenic	Intergenic	-1621	NM_001774	951		NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
19630	chr1	180157301	180158130	+	0	NA	intron (NM_001004128, intron 1 of 12)	intron (NM_001004128, intron 1 of 12)	2846	NM_002826	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
66718	chr14	64444201	64444600	+	0	NA	intron (NM_001364837, intron 21 of 26)	intron (NM_001364837, intron 21 of 26)	-21099	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
62883	chr13	110680801	110681050	+	0	NA	intron (NM_001352252, intron 7 of 15)	G-rich|Low_complexity|Low_complexity	25191	NR_147942	79587		NM_024537	ENSG00000134905	CARS2	COXPD27|cysRS	cysteinyl-tRNA synthetase 2, mitochondrial	protein-coding
3052	chr1	12159621	12160250	+	0	NA	Intergenic	L2a|LINE|L2	-7008	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
236272	chrX	66020721	66020980	+	0	NA	TTS (NM_001257403)	TTS (NM_001257403)	1980	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
230800	chr9	129011851	129011950	+	0	NA	intron (NM_001369915, intron 5 of 10)	intron (NM_001369915, intron 5 of 10)	16431	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
103212	chr17	77480501	77480700	+	0	NA	intron (NM_001113495, intron 1 of 9)	intron (NM_001113495, intron 1 of 9)	4965	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
29578	chr10	71709651	71709950	+	0	NA	intron (NM_001171930, intron 26 of 30)	THE1B|LTR|ERVL-MaLR	9978	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
7886	chr1	36466051	36466150	+	0	NA	TTS (NM_000760)	TTS (NM_000760)	-1716	NM_031280	64960		NM_031280	ENSG00000116898	MRPS15	DC37|MPR-S15|RPMS15|S15mt|uS15m	mitochondrial ribosomal protein S15	protein-coding
160232	chr3	23956901	23957130	+	0	NA	intron (NR_110524, intron 3 of 8)	AluSq|SINE|Alu	-10453	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
35458	chr11	1462001	1462380	+	0	NA	non-coding (NR_046331, exon 21 of 21)	non-coding (NR_046331, exon 21 of 21)	18696	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
26556	chr10	21620871	21621030	+	0	NA	intron (NR_136736, intron 9 of 25)	AluSx1|SINE|Alu	86718	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
131639	chr2	97110701	97111600	+	0	NA	Intergenic	Intergenic	-2003	NM_198555	375248		NM_198555	ENSG00000135976	ANKRD36	UNQ2430	ankyrin repeat domain 36	protein-coding
184790	chr5	111090421	111091000	+	0	NA	Intergenic	L1PA3|LINE|L1	-1638	NM_139281	134430		NM_139281	ENSG00000134987	WDR36	GLC1G|TA-WDRP|TAWDRP|UTP21	WD repeat domain 36	protein-coding
201637	chr6	149464651	149465150	+	0	NA	intron (NM_207360, intron 2 of 5)	intron (NM_207360, intron 2 of 5)	20114	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
100698	chr17	63831451	63832580	+	0	NA	TTS (NM_001098426)	TTS (NM_001098426)	4331	NM_001199163	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
103983	chr17	80009501	80009950	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	26147	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
163164	chr3	50165871	50166030	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	6931	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
91640	chr17	5435101	5435430	+	0	NA	intron (NM_001212, intron 2 of 5)	intron (NM_001212, intron 2 of 5)	3890	NM_001212	708		NM_001212	ENSG00000108561	C1QBP	COXPD33|GC1QBP|HABP1|SF2AP32|SF2p32|gC1Q-R|gC1qR|p32	complement C1q binding protein	protein-coding
2290	chr1	8962851	8963550	+	0	NA	intron (NM_001270502, intron 3 of 5)	L2|LINE|L2	17332	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
121328	chr19	46777321	46777850	+	0	NA	intron (NM_005628, intron 5 of 7)	intron (NM_005628, intron 5 of 7)	7229	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
214534	chr7	150515801	150516330	+	0	NA	intron (NM_153236, intron 1 of 1)	MIRb|SINE|MIR	1193	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
70608	chr14	102794371	102794530	+	0	NA	intron (NM_001199427, intron 1 of 7)	AluJo|SINE|Alu	16971	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
8546	chr1	41123171	41123350	+	0	NA	intron (NM_012236, intron 6 of 14)	intron (NM_012236, intron 6 of 14)	38172	NM_001172222	22955		NM_012236	ENSG00000010803	SCMH1	Scml3	Scm polycomb group protein homolog 1	protein-coding
129277	chr2	68418821	68419180	+	0	NA	Intergenic	LTR78|LTR|ERV1	48294	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
199170	chr6	111748951	111749480	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	9916	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
37177	chr11	14052271	14052430	+	0	NA	intron (NM_006108, intron 3 of 15)	intron (NM_006108, intron 3 of 15)	89627	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
115368	chr19	15231601	15232300	+	0	NA	intron (NM_024794, intron 1 of 6)	CpG	498	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
173852	chr4	22444421	22444680	+	0	NA	intron (NM_145290, intron 6 of 18)	AluSq2|SINE|Alu	-70762	NR_162129	113219450		NR_162129		MIR12115	-	microRNA 12115	ncRNA
184461	chr5	100647651	100647950	+	0	NA	Intergenic	Intergenic	112426	NM_198507	345757		NM_198507	ENSG00000174132	FAM174A	HGS_RE408|NS5ATP6|TMEM157|UNQ1912	family with sequence similarity 174 member A	protein-coding
5502	chr1	25764171	25764530	+	0	NA	intron (NM_001385185, intron 6 of 10)	intron (NM_001385185, intron 6 of 10)	-35843	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
106974	chr18	31956921	31957330	+	0	NA	Intergenic	AluSq2|SINE|Alu	-13997	NM_014939	22878		NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex subunit 8	protein-coding
157465	chr22	45279771	45280200	+	0	NA	Intergenic	Intergenic	-4964	NM_006953	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
147795	chr20	62636251	62636650	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-6053	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
104300	chr17	80887051	80887630	+	0	NA	intron (NM_020761, intron 17 of 33)	intron (NM_020761, intron 17 of 33)	-81708	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
233914	chrX	1659801	1660300	+	0	NA	Intergenic	Intergenic	44917	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
62721	chr13	104976271	104976430	+	0	NA	Intergenic	AluSx4|SINE|Alu	-489517	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
73926	chr15	50900671	50900830	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-7933	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
223364	chr8	143874771	143875130	+	0	NA	intron (NM_031308, intron 1 of 1)	intron (NM_031308, intron 1 of 1)	3517	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238564	chrX	153815051	153815150	+	0	NA	intron (NM_032512, intron 1 of 7)	intron (NM_032512, intron 1 of 7)	14859	NM_001303516	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
49988	chr12	42209321	42209580	+	0	NA	intron (NM_001320080, intron 2 of 4)	AluJb|SINE|Alu	28798	NM_005748	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
144591	chr20	35795151	35795780	+	0	NA	intron (NM_016436, intron 1 of 17)	AluSz|SINE|Alu	23450	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
101563	chr17	68038851	68039250	+	0	NA	intron (NM_002266, intron 3 of 10)	intron (NM_002266, intron 3 of 10)	3090	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
85720	chr16	56633771	56634130	+	0	NA	TTS (NM_176870)	TTS (NM_176870)	1291	NM_176870	4499		NM_176870	ENSG00000205364	MT1M	MT-1M|MT-IM|MT1|MT1K	metallothionein 1M	protein-coding
63684	chr14	21084521	21084780	+	0	NA	intron (NM_001278530, intron 17 of 22)	intron (NM_001278530, intron 17 of 22)	-13778	NM_001282211	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
100666	chr17	63739271	63739630	+	0	NA	intron (NM_001165970, intron 1 of 10)	FLAM_C|SINE|Alu	2349	NR_156741	92335		NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk	STE20 related adaptor alpha	protein-coding
71492	chr14	105996701	105996900	+	0	NA	Intergenic	Intergenic	-24531	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
117686	chr19	27795501	27796030	+	0	NA	intron (NR_110690, intron 1 of 1)	intron (NR_110690, intron 1 of 1)	-1825	NR_027301	148189		NR_027301	ENSG00000261824	LINC00662	-	long intergenic non-protein coding RNA 662	ncRNA
208601	chr7	72949501	72950130	+	0	NA	3' UTR (NM_001257190, exon 16 of 16)	3' UTR (NM_001257190, exon 16 of 16)	4948	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
200160	chr6	130516501	130516880	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	79573	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
222602	chr8	141026551	141026850	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-24621	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
217180	chr8	26311621	26311880	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	18534	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
32002	chr10	100972971	100973130	+	0	NA	intron (NM_001203244, intron 1 of 13)	intron (NM_001203244, intron 1 of 13)	521	NM_017893	57715		NM_017893	ENSG00000095539	SEMA4G	-	semaphorin 4G	protein-coding
56832	chr12	120231221	120232630	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	18238	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
127157	chr2	37924751	37925750	+	0	NA	promoter-TSS (NM_001170791)	promoter-TSS (NM_001170791)	-37	NM_001170791	151393		NM_144713	ENSG00000115841	RMDN2	BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
197250	chr6	70010521	70010840	+	0	NA	intron (NM_001858, intron 11 of 50)	L1HS|LINE|L1	144124	NM_001858	1310		NM_001858	ENSG00000082293	COL19A1	COL9A1L|D6S228E	collagen type XIX alpha 1 chain	protein-coding
106038	chr18	8703651	8703750	+	0	NA	intron (NR_120598, intron 1 of 1)	intron (NR_120598, intron 1 of 1)	-1856	NM_001378205	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
155316	chr22	38205871	38206450	+	0	NA	intron (NM_001161573, intron 1 of 2)	intron (NM_001161573, intron 1 of 2)	3140	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
115396	chr19	15277521	15277850	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluSx|SINE|Alu	2766	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
133930	chr2	130393701	130393900	+	0	NA	Intergenic	Intergenic	34746	NR_046258	100216479		NR_046258		FAR2P2	-	fatty acyl-CoA reductase 2 pseudogene 2	pseudo
81906	chr16	11729271	11729430	+	0	NA	intron (NR_136674, intron 3 of 8)	intron (NR_136674, intron 3 of 8)	13507	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
190082	chr5	177781751	177782200	+	0	NA	intron (NR_146226, intron 1 of 28)	AluYm1|SINE|Alu	945	NR_146227	285596		NM_173663	ENSG00000170074	FAM153A	NY-REN-7	family with sequence similarity 153 member A	protein-coding
49239	chr12	19404071	19404850	+	0	NA	Intergenic	L1PBb|LINE|L1	-35032	NM_153207	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
94526	chr17	29566401	29567500	+	0	NA	promoter-TSS (NM_198147)	promoter-TSS (NM_198147)	87	NM_198147	116236		NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding
126747	chr2	30226581	30227480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4504	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
84342	chr16	30198821	30199450	+	0	NA	promoter-TSS (NM_001017390)	promoter-TSS (NM_001017390)	-120	NM_177552	6818		NM_003166	ENSG00000261052	SULT1A3	HAST|HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|ST1A5|STM|TL-PST	sulfotransferase family 1A member 3	protein-coding
204011	chr7	1886751	1887050	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	-42647	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
222952	chr8	143159721	143160880	+	0	NA	promoter-TSS (NM_001135655)	promoter-TSS (NM_001135655)	21	NM_001135655	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
114510	chr19	12789401	12790700	+	0	NA	Intergenic	CpG	-1436	NM_002229	3726		NM_002229	ENSG00000171223	JUNB	AP-1	JunB proto-oncogene, AP-1 transcription factor subunit	protein-coding
154590	chr22	36278921	36279530	+	0	NA	Intergenic	L1MB3|LINE|L1	7682	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
208951	chr7	74180251	74180350	+	0	NA	intron (NM_022170, intron 1 of 6)	Charlie1a|DNA|hAT-Charlie	5944	NM_022170	7458		NM_022170	ENSG00000106682	EIF4H	WBSCR1|WSCR1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
38478	chr11	45841871	45842300	+	0	NA	Intergenic	MER83|LTR|ERV1	-5033	NM_001127457	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
6280	chr1	27600101	27600700	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	3094	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
175873	chr4	80026171	80026350	+	0	NA	intron (NM_001145794, intron 10 of 15)	THE1D|LTR|ERVL-MaLR	46969	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
187772	chr5	145937521	145937780	+	0	NA	intron (NM_152550, intron 1 of 9)	intron (NM_152550, intron 1 of 9)	1072	NM_152550	153769		NM_152550	ENSG00000156463	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
131701	chr2	97742301	97743300	+	0	NA	Intergenic	MIRb|SINE|MIR	9500	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
58273	chr12	128915001	128915400	+	0	NA	intron (NR_133646, intron 5 of 10)	intron (NR_133646, intron 5 of 10)	61722	NM_001366888	144423		NM_144669	ENSG00000151948	GLT1D1	-	glycosyltransferase 1 domain containing 1	protein-coding
25664	chr10	8363951	8364450	+	0	NA	Intergenic	Intergenic	-95895	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
176124	chr4	83099651	83100500	+	0	NA	intron (NM_016619, intron 3 of 4)	AluY|SINE|Alu	9814	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
149666	chr21	33577451	33578030	+	0	NA	TTS (NR_103797)	TTS (NR_103797)	10944	NM_017613	29980		NM_017613	ENSG00000159147	DONSON	B17|C21orf60|MIMIS|MISSLA	DNA replication fork stabilization factor DONSON	protein-coding
232581	chr9	136394471	136395080	+	0	NA	intron (NM_003086, intron 5 of 22)	intron (NM_003086, intron 5 of 22)	3662	NM_003086	6621		NM_003086	ENSG00000165684	SNAPC4	NEDRSO|PTFalpha|SNAP190	small nuclear RNA activating complex polypeptide 4	protein-coding
203382	chr6	170523451	170523900	+	0	NA	Intergenic	Intergenic	29632	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
228228	chr9	97908501	97909600	+	0	NA	intron (NM_001371657, intron 4 of 5)	AluSx1|SINE|Alu	13131	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
22983	chr1	226086871	226087330	+	0	NA	intron (NR_146920, intron 2 of 3)	ERVL-E-int|LTR|ERVL	3525	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
229938	chr9	126650071	126650430	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	36322	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
77339	chr15	82532501	82532950	+	0	NA	Intergenic	Intergenic	7732	NM_001021	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
144417	chr20	35315271	35315630	+	0	NA	intron (NM_018244, intron 7 of 9)	intron (NM_018244, intron 7 of 9)	-23025	NM_178468	128876		NM_178468	ENSG00000125998	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83 member C	protein-coding
114767	chr19	13731201	13732600	+	0	NA	5' UTR (NM_001320567, exon 1 of 10)	5' UTR (NM_001320567, exon 1 of 10)	148	NM_001320564	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
58086	chr12	124599151	124599450	+	0	NA	Intergenic	L1ME1|LINE|L1	-31688	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
122059	chr19	48672351	48672850	+	0	NA	intron (NM_145807, intron 1 of 6)	intron (NM_145807, intron 1 of 6)	417	NM_145807	126147		NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
84708	chr16	30872351	30872680	+	0	NA	intron (NM_001286526, intron 5 of 5)	intron (NM_001286526, intron 5 of 5)	2808	NR_039744	100616231		NR_039744	ENSG00000265991	MIR4519	-	microRNA 4519	ncRNA
163505	chr3	51387401	51387930	+	0	NA	intron (NM_006010, intron 2 of 3)	intron (NM_006010, intron 2 of 3)	2374	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
57162	chr12	121349271	121349830	+	0	NA	intron (NM_001137559, intron 1 of 16)	AluJr4|SINE|Alu	2861	NM_001330489	51433		NM_016237	ENSG00000089053	ANAPC5	APC5	anaphase promoting complex subunit 5	protein-coding
208865	chr7	73725251	73726730	+	0	NA	Intergenic	Intergenic	-6321	NM_001165903	6804		NM_004603	ENSG00000106089	STX1A	HPC-1|P35-1|STX1|SYN1A	syntaxin 1A	protein-coding
80419	chr16	2625371	2625730	+	0	NA	intron (NR_015441, intron 3 of 3)	L1M4|LINE|L1	-13432	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
196871	chr6	49607171	49607350	+	0	NA	intron (NM_000324, intron 7 of 9)	intron (NM_000324, intron 7 of 9)	29579	NM_000324	6005		NM_000324	ENSG00000112077	RHAG	CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1	Rh associated glycoprotein	protein-coding
112339	chr19	5918571	5919330	+	0	NA	intron (NM_003624, intron 14 of 16)	intron (NM_003624, intron 14 of 16)	4696	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
24522	chr1	244831071	244831430	+	0	NA	Intergenic	AluSx|SINE|Alu	-4056	NM_001312871	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
4692	chr1	23081251	23081800	+	0	NA	exon (NM_001009999, exon 19 of 21)	exon (NM_001009999, exon 19 of 21)	37220	NR_036057	100422866		NR_036057	ENSG00000263793	MIR3115	mir-3115	microRNA 3115	ncRNA
18316	chr1	161173971	161174400	+	0	NA	intron (NM_001199874, intron 4 of 7)	AluY|SINE|Alu	3322	NM_003779	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
115431	chr19	15311971	15312130	+	0	NA	intron (NM_001379291, intron 1 of 19)	L1MB2|LINE|L1	20489	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
126592	chr2	28769271	28769630	+	0	NA	intron (NM_206876, intron 2 of 8)	AluSp|SINE|Alu	17620	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
184338	chr5	96953771	96954450	+	0	NA	intron (NM_005575, intron 1 of 17)	intron (NM_005575, intron 1 of 17)	-4323	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
100912	chr17	64460301	64460700	+	0	NA	intron (NM_001085423, intron 4 of 9)	AluJr|SINE|Alu	11385	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
176670	chr4	100165601	100166100	+	0	NA	Intergenic	Intergenic	-24183	NR_125924	101929353		NR_125924	ENSG00000249710	DDIT4L-AS1	-	DDIT4L antisense RNA 1	ncRNA
1795	chr1	6156721	6157180	+	0	NA	intron (NM_015557, intron 3 of 41)	MIRc|SINE|MIR	23371	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
11045	chr1	84992371	84992530	+	0	NA	intron (NM_001330647, intron 1 of 14)	intron (NM_001330647, intron 1 of 14)	4663	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
237781	chrX	129779471	129780350	+	0	NA	promoter-TSS (NM_018990)	promoter-TSS (NM_018990)	-39	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
147822	chr20	62715851	62716880	+	0	NA	intron (NM_002531, intron 1 of 3)	L1ME1|LINE|L1	7529	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
58753	chr12	132618851	132620280	+	0	NA	exon (NM_001282164, exon 2 of 11)	exon (NM_001282164, exon 2 of 11)	789	NM_170682	22953		NM_012226	ENSG00000187848	P2RX2	DFNA41|P2X2	purinergic receptor P2X 2	protein-coding
7165	chr1	32248071	32249060	+	0	NA	exon (NM_032648, exon 2 of 2)	exon (NM_032648, exon 2 of 2)	1343	NM_032648	84734		NM_032648	ENSG00000183615	FAM167B	C1orf90|DIORA-2	family with sequence similarity 167 member B	protein-coding
182572	chr5	65955821	65956750	+	0	NA	intron (NM_001253697, intron 1 of 25)	intron (NM_001253697, intron 1 of 25)	-10712	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
117263	chr19	19456171	19456530	+	0	NA	intron (NM_001384516, intron 2 of 12)	Tigger9b|DNA|TcMar-Tigger	21287	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
9496	chr1	51246201	51246400	+	0	NA	intron (NM_014372, intron 1 of 2)	AluJo|SINE|Alu	10027	NM_014372	26994		NM_014372	ENSG00000123091	RNF11	CGI-123|SID1669	ring finger protein 11	protein-coding
77137	chr15	79596021	79596330	+	0	NA	Intergenic	Intergenic	163839	NM_015206	23251		NM_015206	ENSG00000169330	MINAR1	KIAA1024|UBTOR	membrane integral NOTCH2 associated receptor 1	protein-coding
100283	chr17	59697971	59698930	+	0	NA	intron (NM_016077, intron 1 of 1)	intron (NM_016077, intron 1 of 1)	8980	NM_016077	51651		NM_016077	ENSG00000141378	PTRH2	BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2	peptidyl-tRNA hydrolase 2	protein-coding
163932	chr3	52696001	52696200	+	0	NA	intron (NM_001278280, intron 7 of 10)	intron (NM_001278280, intron 7 of 10)	3364	NR_003057	692109		NR_003057	ENSG00000212452	SNORD69	HBII-210	small nucleolar RNA, C/D box 69	snoRNA
5539	chr1	25817521	25818180	+	0	NA	3' UTR (NM_020451, exon 13 of 13)	3' UTR (NM_020451, exon 13 of 13)	-2056	NM_001099627	56181		NM_019557	ENSG00000117640	MTFR1L	FAM54B|HYST1888|MST116|MSTP116	mitochondrial fission regulator 1 like	protein-coding
196377	chr6	43252151	43252450	+	0	NA	intron (NM_032538, intron 2 of 14)	intron (NM_032538, intron 2 of 14)	8819	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
62130	chr13	95679871	95680280	+	0	NA	intron (NM_006260, intron 1 of 11)	intron (NM_006260, intron 1 of 11)	2936	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
90689	chr17	1730601	1730800	+	0	NA	intron (NM_001163809, intron 2 of 9)	intron (NM_001163809, intron 2 of 9)	5996	NM_001163809	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
174354	chr4	38754071	38754230	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	28840	NM_030956	81793		NM_030956	ENSG00000174123	TLR10	CD290	toll like receptor 10	protein-coding
193319	chr6	30130551	30131480	+	0	NA	Intergenic	Intergenic	-5125	NM_001286633	135644		NM_138700	ENSG00000204614	TRIM40	RNF35	tripartite motif containing 40	protein-coding
48674	chr12	10556571	10556730	+	0	NA	intron (NR_146456, intron 1 of 2)	intron (NR_146456, intron 1 of 2)	3271	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
109599	chr19	929101	929300	+	0	NA	intron (NM_005224, intron 1 of 8)	intron (NM_005224, intron 1 of 8)	3165	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
40348	chr11	63951521	63953400	+	0	NA	exon (NM_001300800, exon 5 of 8)	exon (NM_001300800, exon 5 of 8)	13129	NM_001300800	79829		NM_024771	ENSG00000110583	NAA40	NAT11|NatD|PATT1|hNatD	N-alpha-acetyltransferase 40, NatD catalytic subunit	protein-coding
159003	chr3	10366771	10366930	+	0	NA	intron (NM_001353564, intron 10 of 20)	intron (NM_001353564, intron 10 of 20)	27712	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
230214	chr9	127835871	127836230	+	0	NA	intron (NM_001114753, intron 2 of 14)	intron (NM_001114753, intron 2 of 14)	11117	NM_001278138	2022		NM_000118	ENSG00000106991	ENG	END|HHT1|ORW1	endoglin	protein-coding
48715	chr12	10695971	10696130	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-21998	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
51950	chr12	53747751	53748050	+	0	NA	Intergenic	Intergenic	3935	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
149912	chr21	36145221	36145680	+	0	NA	intron (NR_038894, intron 2 of 2)	AluJb|SINE|Alu	10371	NM_001236	874		NM_001236	ENSG00000159231	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
182465	chr5	62333551	62333980	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	27559	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
89082	chr16	88469521	88471350	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	1517	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
123133	chr19	52026921	52027330	+	0	NA	intron (NM_025040, intron 1 of 4)	LTR5B|LTR|ERVK	1254	NM_025040	80110		NM_025040	ENSG00000142556	ZNF614	-	zinc finger protein 614	protein-coding
210503	chr7	100179071	100179750	+	0	NA	intron (NM_012447, intron 1 of 33)	AluJo|SINE|Alu	1492	NM_001282718	10734		NM_012447	ENSG00000066923	STAG3	SA3|SPGF61	STAG3 cohesin complex component	protein-coding
239411	chrY	26340151	26340250	+	0	NA	Intergenic	L1PA3|LINE|L1	611710	NR_002176	474148		NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis expressed transcript, Y-linked 3B	ncRNA
9006	chr1	44720251	44720550	+	0	NA	intron (NM_001145636, intron 6 of 11)	intron (NM_001145636, intron 6 of 11)	1501	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
149283	chr21	26850151	26850330	+	0	NA	Intergenic	Intergenic	-4831	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
211606	chr7	105875071	105875300	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	1400	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
200019	chr6	129619421	129620030	+	0	NA	intron (NM_033515, intron 5 of 14)	intron (NM_033515, intron 5 of 14)	90452	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
130017	chr2	74197801	74200300	+	0	NA	intron (NM_006636, intron 1 of 7)	CpG	435	NM_006636	10797		NM_006636	ENSG00000065911	MTHFD2	NMDMC	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	protein-coding
76867	chr15	77943351	77943450	+	0	NA	intron (NR_157580, intron 1 of 4)	AluSx|SINE|Alu	1161	NR_157580	440292		NR_157580		COMMD4P1	-	COMM domain containing 4 pseudogene 1	pseudo
111100	chr19	3198551	3199850	+	0	NA	intron (NM_020170, intron 5 of 14)	intron (NM_020170, intron 5 of 14)	13270	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
46566	chr11	128495471	128495630	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	26760	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
179574	chr4	185235821	185236080	+	0	NA	intron (NM_001378032, intron 1 of 19)	LTR22E|LTR|ERVK	26393	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
61627	chr13	73756651	73756950	+	0	NA	intron (NM_007249, intron 6 of 7)	intron (NM_007249, intron 6 of 7)	192556	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
214086	chr7	143571571	143571730	+	0	NA	promoter-TSS (NM_001008747).3	promoter-TSS (NM_001008747).3	-151	NM_001008747	441294		NM_001008747	ENSG00000271079	CTAGE15	CTAGE15P|cTAGE-15	CTAGE family member 15	protein-coding
155537	chr22	38708371	38709330	+	0	NA	exon (NM_004286, exon 2 of 12)	exon (NM_004286, exon 2 of 12)	2906	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
40702	chr11	64785551	64785850	+	0	NA	3' UTR (NM_001307990, exon 32 of 32)	3' UTR (NM_001307990, exon 32 of 32)	-7158	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
21874	chr1	207737351	207737680	+	0	NA	Intergenic	Intergenic	-14523	NM_002389	4179		NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding
140599	chr2	233394871	233395230	+	0	NA	intron (NM_003648, intron 2 of 28)	L1MEf|LINE|L1	6896	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
99035	chr17	48875671	48876230	+	0	NA	intron (NR_135674, intron 3 of 3)	AluY|SINE|Alu	-16837	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
211956	chr7	112489951	112490450	+	0	NA	3' UTR (NM_182597, exon 4 of 4)	3' UTR (NM_182597, exon 4 of 4)	9209	NM_182597	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
173780	chr4	17579751	17581080	+	0	NA	intron (NM_015907, intron 2 of 12)	Tigger19b|DNA|TcMar-Tigger	3217	NM_015907	51056		NM_015907	ENSG00000002549	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
107611	chr18	48925521	48925780	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	17157	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
83269	chr16	23987351	23987700	+	0	NA	intron (NM_212535, intron 2 of 16)	L1MC5|LINE|L1	151542	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
45333	chr11	118219371	118220250	+	0	NA	intron (NM_001098526, intron 1 of 9)	MER83B-int|LTR|ERV1	5201	NM_001098526	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
12920	chr1	110641301	110642250	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10335	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
180469	chr5	10863821	10864080	+	0	NA	Intergenic	Intergenic	-102716	NM_001291963	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
61974	chr13	79477921	79479230	+	0	NA	intron (NR_046685, intron 2 of 2)	intron (NR_046685, intron 2 of 2)	-2549	NM_001161407	54602		NM_019080	ENSG00000102471	NDFIP2	N4WBP5A	Nedd4 family interacting protein 2	protein-coding
186281	chr5	134545071	134545600	+	0	NA	intron (NM_001289985, intron 3 of 11)	intron (NM_001289985, intron 3 of 11)	19227	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
200313	chr6	133569651	133569750	+	0	NA	intron (NR_109982, intron 4 of 8)	intron (NR_109982, intron 4 of 8)	-251447	NR_027030	154089		NM_153224		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
113159	chr19	8361971	8362650	+	0	NA	Intergenic	Intergenic	-1845	NR_104213	51129		NM_016109	ENSG00000167772	ANGPTL4	ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158	angiopoietin like 4	protein-coding
185737	chr5	132094701	132095830	+	0	NA	Intergenic	Intergenic	21476	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
216842	chr8	22596951	22600480	+	0	NA	promoter-TSS (NM_001013842)	promoter-TSS (NM_001013842)	-884	NM_001013842	541565		NM_173686	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
202015	chr6	152640501	152641100	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-3438	NM_182961	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
10234	chr1	63323421	63324280	+	0	NA	promoter-TSS (NR_121636)	promoter-TSS (NR_121636)	-175	NR_121636	100996301		NR_121634	ENSG00000230798	FOXD3-AS1	FAST|pasFOXD3	FOXD3 antisense RNA 1	ncRNA
204884	chr7	6010621	6011150	+	0	NA	intron (NM_001326611, intron 2 of 4)	FLAM_C|SINE|Alu	1318	NM_001362785	7965		NM_006303	ENSG00000106305	AIMP2	HLD17|JTV-1|JTV1|P38	aminoacyl tRNA synthetase complex interacting multifunctional protein 2	protein-coding
37379	chr11	16925551	16925930	+	0	NA	TTS (NR_145810)	TTS (NR_145810)	282	NR_145810	109623465		NR_145810		SNORD147	-	small nucleolar RNA, C/D box 147	snoRNA
35810	chr11	2213151	2213880	+	0	NA	Intergenic	L1MB3|LINE|L1	40452	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
143744	chr20	32363771	32364100	+	0	NA	intron (NM_001363734, intron 1 of 10)	intron (NM_001363734, intron 1 of 10)	4870	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
34066	chr10	124919221	124920030	+	0	NA	Intergenic	AluY|SINE|Alu	-22498	NM_017580	54764		NM_017580	ENSG00000019995	ZRANB1	TRABID	zinc finger RANBP2-type containing 1	protein-coding
10452	chr1	66283701	66284330	+	0	NA	intron (NM_001037340, intron 5 of 14)	L2c|LINE|L2	-48093	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
130384	chr2	85309721	85310780	+	0	NA	3' UTR (NM_031283, exon 12 of 12)	3' UTR (NM_031283, exon 12 of 12)	17739	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
206926	chr7	38224371	38224930	+	0	NA	intron (NM_032016, intron 7 of 8)	Tigger7|DNA|TcMar-Tigger	46405	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
142595	chr20	5571801	5572000	+	0	NA	intron (NM_019593, intron 11 of 19)	AluSx1|SINE|Alu	39106	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
222420	chr8	134619651	134620350	+	0	NA	intron (NM_020863, intron 3 of 15)	intron (NM_020863, intron 3 of 15)	21929	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
134813	chr2	148526521	148526980	+	0	NA	Intergenic	Intergenic	-118001	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
54031	chr12	75635801	75636150	+	0	NA	Intergenic	LTR107_Mam|LTR|LTR	-124366	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
80843	chr16	3496071	3497050	+	0	NA	promoter-TSS (NM_001353382)	promoter-TSS (NM_001353382)	92	NM_001353384	646174		NM_001080524	ENSG00000215131	C16orf90	-	chromosome 16 open reading frame 90	protein-coding
199624	chr6	119471151	119471480	+	0	NA	intron (NR_046100, intron 2 of 5)	L1ME3A|LINE|L1	19987	NR_046100	285762		NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
88220	chr16	81851101	81851700	+	0	NA	intron (NM_002661, intron 2 of 32)	L1MC4a|LINE|L1	72109	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
123716	chr19	55043321	55044830	+	0	NA	TTS (NR_027381).5	TTS (NR_027381).5	-5811	NM_001256017	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
45654	chr11	119011821	119012430	+	0	NA	intron (NR_104050, intron 6 of 10).2	intron (NR_104050, intron 6 of 10).2	6218	NM_001028	6230		NM_001028	ENSG00000118181	RPS25	S25|eS25	ribosomal protein S25	protein-coding
78438	chr15	92811601	92812000	+	0	NA	Intergenic	AluJr|SINE|Alu	16316	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
224862	chr9	31153351	31153680	+	0	NA	Intergenic	Intergenic	227975	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
91011	chr17	2792401	2793590	+	0	NA	intron (NM_001330058, intron 1 of 24)	intron (NM_001330058, intron 1 of 24)	-3443	NM_001100398	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
95019	chr17	32441851	32442630	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-2270	NM_002815	5717		NM_002815	ENSG00000108671	PSMD11	Rpn6|S9|p44.5	proteasome 26S subunit, non-ATPase 11	protein-coding
79691	chr16	1280821	1281080	+	0	NA	Intergenic	Intergenic	24881	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
209188	chr7	75409851	75411280	+	0	NA	intron (NR_104013, intron 1 of 7)	CpG	243	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
178987	chr4	163332671	163333050	+	0	NA	promoter-TSS (NM_000909)	promoter-TSS (NM_000909)	-264	NM_000909	4886		NM_000909	ENSG00000164128	NPY1R	NPY1-R|NPYR	neuropeptide Y receptor Y1	protein-coding
191732	chr6	13708201	13708850	+	0	NA	intron (NM_005493, intron 1 of 13)	intron (NM_005493, intron 1 of 13)	3310	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
81139	chr16	4399871	4400550	+	0	NA	intron (NM_001351729, intron 6 of 27)	L1MC2|LINE|L1	15687	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
85131	chr16	34593201	34593830	+	0	NA	Intergenic	Intergenic	-212035	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
129026	chr2	64919701	64919900	+	0	NA	intron (NR_036586, intron 1 of 2)	intron (NR_036586, intron 1 of 2)	12647	NR_036586	400958		NR_036586		LINC02245	-	long intergenic non-protein coding RNA 2245	ncRNA
87745	chr16	75224051	75224350	+	0	NA	intron (NM_001906, intron 6 of 6)	intron (NM_001906, intron 6 of 6)	-2183	NR_109777	100506281		NR_109777	ENSG00000290455	LOC100506281	-	uncharacterized LOC100506281	ncRNA
7356	chr1	32774871	32775030	+	0	NA	TTS (NM_001198973)	TTS (NM_001198973)	9323	NM_001198972	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
137115	chr2	190998971	190999350	+	0	NA	intron (NM_139266, intron 7 of 22)	intron (NM_139266, intron 7 of 22)	15011	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
186000	chr5	133848321	133848580	+	0	NA	Intergenic	Intergenic	-65227	NR_131252	105664404		NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
205291	chr7	10936921	10937330	+	0	NA	intron (NM_002489, intron 3 of 3)	intron (NM_002489, intron 3 of 3)	3028	NM_002489	4697		NM_002489	ENSG00000189043	NDUFA4	CI-9k|CI-MLRQ|COXFA4|MC4DN21|MISTR1|MLRQ|MRCAF1	NDUFA4 mitochondrial complex associated	protein-coding
196520	chr6	43770801	43772350	+	0	NA	promoter-TSS (NM_001287044)	promoter-TSS (NM_001287044)	-393	NM_001287044	7422		NM_003376	ENSG00000112715	VEGFA	L-VEGF|MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
199723	chr6	125746551	125747400	+	0	NA	Intergenic	Intergenic	-2657	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
30966	chr10	87861701	87862900	+	0	NA	exon (NM_001126049, exon 1 of 1)	exon (NM_001126049, exon 1 of 1)	1233	NM_001126049	100144748		NM_001126049	ENSG00000227268	KLLN	CWS4|KILLIN	killin, p53 regulated DNA replication inhibitor	protein-coding
130230	chr2	84822071	84822230	+	0	NA	intron (NM_001080824, intron 5 of 5)	intron (NM_001080824, intron 5 of 5)	58934	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
159309	chr3	13004151	13004730	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-17339	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
193013	chr6	28266651	28267550	+	0	NA	promoter-TSS (NM_152736)	promoter-TSS (NM_152736)	90	NM_152736	7741		NM_007151	ENSG00000197062	ZSCAN26	SRE-ZBP|SREZBP|ZNF187	zinc finger and SCAN domain containing 26	protein-coding
232306	chr9	134518051	134518230	+	0	NA	Intergenic	Intergenic	111580	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
48927	chr12	12695501	12697530	+	0	NA	promoter-TSS (NM_006143)	promoter-TSS (NM_006143)	-332	NM_006143	2842		NM_006143	ENSG00000183150	GPR19	-	G protein-coupled receptor 19	protein-coding
85838	chr16	57007071	57008280	+	0	NA	intron (NR_169520, intron 1 of 47)	AluSx|SINE|Alu	18118	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
69216	chr14	92717671	92718350	+	0	NA	intron (NM_001008530, intron 4 of 14)	intron (NM_001008530, intron 4 of 14)	30617	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
50931	chr12	49346171	49346350	+	0	NA	promoter-TSS (NM_001304944)	promoter-TSS (NM_001304944)	-628	NM_024902	79962		NM_024902	ENSG00000178401	DNAJC22	wus	DnaJ heat shock protein family (Hsp40) member C22	protein-coding
171917	chr4	850251	850830	+	0	NA	intron (NM_001318134, intron 23 of 24)	intron (NM_001318134, intron 23 of 24)	-24411	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
143643	chr20	31852471	31853000	+	0	NA	intron (NM_001320479, intron 6 of 9)	AluSq2|SINE|Alu	-7131	NM_004118	2307		NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
59359	chr13	24626311	24627080	+	0	NA	Intergenic	Intergenic	46487	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
234585	chrX	19773531	19773880	+	0	NA	intron (NM_001353892, intron 2 of 17)	AluY|SINE|Alu	26068	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
55773	chr12	108573371	108573530	+	0	NA	Intergenic	MIR|SINE|MIR	10854	NM_213595	23479		NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
152772	chr22	21781521	21781780	+	0	NA	intron (NM_138957, intron 6 of 7)	AluSx|SINE|Alu	-45856	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
178502	chr4	150659771	150659930	+	0	NA	intron (NM_001367550, intron 37 of 56)	SVA_F|Retroposon|SVA	77699	NM_006439	10586		NM_006439	ENSG00000181541	MAB21L2	MCOPS14|MCSKS14	mab-21 like 2	protein-coding
235590	chrX	47573771	47575180	+	0	NA	exon (NM_006950, exon 12 of 13)	exon (NM_006950, exon 12 of 13)	-7961	NM_003254	7076		NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP|TIMP-1	TIMP metallopeptidase inhibitor 1	protein-coding
129844	chr2	72894651	72894950	+	0	NA	Intergenic	Intergenic	7392	NM_003124	6697		NM_003124	ENSG00000116096	SPR	SDR38C1	sepiapterin reductase	protein-coding
80913	chr16	3762401	3762600	+	0	NA	intron (NM_004380, intron 16 of 30)	intron (NM_004380, intron 16 of 30)	-44976	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
197132	chr6	57928971	57929130	+	0	NA	intron (NR_132998, intron 3 of 5)	intron (NR_132998, intron 3 of 5)	7879	NR_132999	375513		NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L	GUSB pseudogene 4	pseudo
45155	chr11	117203751	117203850	+	0	NA	TTS (NM_004716)	TTS (NM_004716)	-1886	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
59217	chr13	23377401	23377700	+	0	NA	intron (NM_014363, intron 2 of 9)	intron (NM_014363, intron 2 of 9)	-2042	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
170256	chr3	184250201	184250750	+	0	NA	promoter-TSS (NM_001006941)	promoter-TSS (NM_001006941)	803	NM_014693	110599583		NM_014693	ENSG00000284917	EEF1AKMT4-ECE2	ECE-2|ECE2	EEF1AKMT4-ECE2 readthrough	protein-coding
116168	chr19	17404951	17406120	+	0	NA	promoter-TSS (NR_130765)	promoter-TSS (NR_130765)	95	NM_004335	684		NM_004335	ENSG00000130303	BST2	CD317|HM1.24|TETHERIN	bone marrow stromal cell antigen 2	protein-coding
183227	chr5	76332671	76332830	+	0	NA	3' UTR (NM_014979, exon 13 of 13)	3' UTR (NM_014979, exon 13 of 13)	-70535	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
36882	chr11	10654071	10654500	+	0	NA	intron (NM_001206880, intron 1 of 19)	intron (NM_001206880, intron 1 of 19)	-2007	NM_001098579	10335		NM_130385	ENSG00000072952	IRAG1	IRAG|JAW1L|MRVI1	inositol 1,4,5-triphosphate receptor associated 1	protein-coding
131715	chr2	97870551	97871100	+	0	NA	intron (NM_015348, intron 4 of 40)	intron (NM_015348, intron 4 of 40)	125123	NM_015348	23505		NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
107367	chr18	45975051	45975150	+	0	NA	Intergenic	AluY|SINE|Alu	-7771	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
14247	chr1	143241171	143241850	+	0	NA	Intergenic	Intergenic	181082	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
237369	chrX	119000621	119000880	+	0	NA	intron (NM_001031855, intron 5 of 10)	intron (NM_001031855, intron 5 of 10)	24418	NM_001289109	79836		NM_024778	ENSG00000175556	LONRF3	RNF127	LON peptidase N-terminal domain and ring finger 3	protein-coding
183343	chr5	76763051	76763550	+	0	NA	Intergenic	Intergenic	47174	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
6608	chr1	28845971	28846330	+	0	NA	intron (NM_000911, intron 1 of 2)	L2c|LINE|L2	33980	NM_000911	4985		NM_000911	ENSG00000116329	OPRD1	DOP|DOR|DOR1|OPRD	opioid receptor delta 1	protein-coding
110387	chr19	1927551	1928350	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-13222	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
156634	chr22	41615371	41615780	+	0	NA	intron (NM_015704, intron 1 of 5)	intron (NM_015704, intron 1 of 5)	5468	NM_015704	27351		NM_015704	ENSG00000100418	DESI1	D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|POST|PPPDE2	desumoylating isopeptidase 1	protein-coding
234316	chrX	13736221	13736930	+	0	NA	exon (NM_003611, exon 3 of 23)	exon (NM_003611, exon 3 of 23)	1827	NM_003611	8481		NM_003611	ENSG00000046651	OFD1	71-7A|CXorf5|JBTS10|RP23|SGBS2	OFD1 centriole and centriolar satellite protein	protein-coding
138785	chr2	216081371	216082830	+	0	NA	promoter-TSS (NM_018441)	promoter-TSS (NM_018441)	181	NM_138390	92691		NM_138390	ENSG00000163449	TMEM169	-	transmembrane protein 169	protein-coding
100816	chr17	64081821	64082750	+	0	NA	intron (NM_001433, intron 2 of 21)	intron (NM_001433, intron 2 of 21)	47859	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
35940	chr11	2466421	2466680	+	0	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	5096	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
74100	chr15	52795071	52795230	+	0	NA	Intergenic	CpG	-4814	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
147926	chr20	62916471	62917230	+	0	NA	intron (NM_022105, intron 1 of 5)	Charlie1a|DNA|hAT-Charlie	9655	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
55113	chr12	98522551	98522650	+	0	NA	intron (NM_001307975, intron 1 of 7)	MIR|SINE|MIR	-6374	NR_027157	100128191		NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA
224998	chr9	33116871	33117980	+	0	NA	intron (NM_001378495, intron 3 of 5)	intron (NM_001378495, intron 3 of 5)	8733	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
114889	chr19	13903071	13903800	+	0	NA	intron (NM_001345844, intron 2 of 7)	AluSx|SINE|Alu	2682	NM_024323	79173		NM_024323	ENSG00000132016	BRME1	C19orf57|MEIOK21	break repair meiotic recombinase recruitment factor 1	protein-coding
220350	chr8	99499321	99499680	+	0	NA	intron (NM_152564, intron 25 of 61)	intron (NM_152564, intron 25 of 61)	37230	NR_030329	693184		NR_030329	ENSG00000207804	MIR599	MIRN599|hsa-mir-599	microRNA 599	ncRNA
74468	chr15	59791801	59792730	+	0	NA	Intergenic	MER52A|LTR|ERV1	-102945	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
13162	chr1	111753501	111753930	+	0	NA	intron (NR_125963, intron 1 of 2)	L2c|LINE|L2	1794	NR_125963	101928718		NR_125963	ENSG00000284830	LOC101928718	-	uncharacterized LOC101928718	ncRNA
163511	chr3	51394771	51395700	+	0	NA	TTS (NM_014703)	TTS (NM_014703)	3950	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
75783	chr15	68797101	68798100	+	0	NA	intron (NM_006305, intron 1 of 6)	intron (NM_006305, intron 1 of 6)	4325	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
22489	chr1	221729651	221729950	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	7100	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
210030	chr7	94030671	94030830	+	0	NA	Intergenic	L2|LINE|L2	-26395	NM_001317739	10282		NM_005868	ENSG00000105829	BET1	HBET1|MDRP	Bet1 golgi vesicular membrane trafficking protein	protein-coding
6747	chr1	30722971	30723750	+	0	NA	intron (NM_002379, intron 1 of 7)	intron (NM_002379, intron 1 of 7)	225	NM_002379	4146		NM_002379	ENSG00000162510	MATN1	CMP|CRTM	matrilin 1	protein-coding
90876	chr17	2380601	2380830	+	0	NA	3' UTR (NM_001098509, exon 23 of 23)	3' UTR (NM_001098509, exon 23 of 23)	20345	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
100531	chr17	62484521	62485280	+	0	NA	intron (NM_001375269, intron 2 of 20)	AluYh3a3|SINE|Alu	3787	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
203154	chr6	167001571	167001730	+	0	NA	intron (NM_194429, intron 2 of 11)	intron (NM_194429, intron 2 of 11)	2253	NM_194429	11116		NM_007045	ENSG00000213066	CEP43	FGFR1OP|FOP	centrosomal protein 43	protein-coding
163836	chr3	52462471	52462950	+	0	NA	intron (NM_001276294, intron 3 of 13)	AluSq|SINE|Alu	7106	NM_001276294	11188		NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
10555	chr1	67144671	67145300	+	0	NA	Intergenic	L2b|LINE|L2	-10015	NR_075077	400757		NM_001013674	ENSG00000203963	C1orf141	-	chromosome 1 open reading frame 141	protein-coding
84013	chr16	29463101	29463300	+	0	NA	intron (NM_001017390, intron 4 of 7).2	MIRb|SINE|MIR	3287	NM_001017390	445329		NM_001017389	ENSG00000213648	SULT1A4	HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|STM|TL-PST	sulfotransferase family 1A member 4	protein-coding
181096	chr5	36904701	36905180	+	0	NA	intron (NM_133433, intron 1 of 46)	MLT1F2|LTR|ERVL-MaLR	28171	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
75128	chr15	64571801	64572200	+	0	NA	intron (NM_015042, intron 2 of 9)	L2b|LINE|L2	111422	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
54540	chr12	92136251	92136950	+	0	NA	intron (NR_132341, intron 1 of 4)	L2b|LINE|L2	5113	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
156733	chr22	41804901	41805230	+	0	NA	intron (NM_001382346, intron 2 of 7)	AluSz6|SINE|Alu	4386	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
163497	chr3	51371901	51372400	+	0	NA	intron (NM_004947, intron 49 of 52)	intron (NM_004947, intron 49 of 52)	-13141	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
159530	chr3	14433601	14435150	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	31769	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
38036	chr11	35150771	35151650	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	-11740	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
88421	chr16	84719271	84719600	+	0	NA	intron (NM_001272075, intron 2 of 14)	MER5B|DNA|hAT-Charlie	19435	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
143175	chr20	24149921	24150180	+	0	NA	Intergenic	Intergenic	-49717	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
58061	chr12	124517451	124517750	+	0	NA	intron (NM_001077261, intron 2 of 47)	CpG	50012	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
211852	chr7	110977251	110977580	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-113591	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
132803	chr2	110390101	110391080	+	0	NA	Intergenic	Intergenic	-6054	NR_027244	151009		NM_152518		LINC01106	-	long intergenic non-protein coding RNA 1106	ncRNA
208615	chr7	72959671	72960430	+	0	NA	exon (NM_198853, exon 4 of 5)	exon (NM_198853, exon 4 of 5)	-5287	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
124148	chr19	55712851	55713630	+	0	NA	intron (NM_176820, intron 6 of 8)	L2a|LINE|L2	25162	NM_176820	338321		NM_176820	ENSG00000185792	NLRP9	CLR19.1|NALP9|NOD6|PAN12	NLR family pyrin domain containing 9	protein-coding
19510	chr1	175208821	175210300	+	0	NA	Intergenic	Intergenic	-16573	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
201418	chr6	146775351	146775450	+	0	NA	intron (NM_024694, intron 29 of 35)	intron (NM_024694, intron 29 of 35)	28424	NR_003954	729176		NR_003954		KATNBL1P6	-	katanin regulatory subunit B1 like 1 pseudogene 6	pseudo
149816	chr21	35003621	35004080	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	35576	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
75821	chr15	69412571	69412730	+	0	NA	intron (NR_132969, intron 1 of 1)	MER39|LTR|ERV1	-1699	NR_160295	9493		NM_004856	ENSG00000137807	KIF23	CDA3|CDAIII|CDAN3|CDAN3A|CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
71829	chr15	22177771	22178800	+	0	NA	non-coding (NR_135666, exon 2 of 2).2	non-coding (NR_135666, exon 2 of 2).2	311	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
66669	chr14	63903301	63903700	+	0	NA	intron (NM_015180, intron 1 of 114)	FLAM_A|SINE|Alu	50496	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
69028	chr14	91801271	91801630	+	0	NA	intron (NM_001128595, intron 4 of 11).2	AluJb|SINE|Alu	35005	NM_152332	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
201685	chr6	149545701	149547230	+	0	NA	promoter-TSS (NM_139126)	promoter-TSS (NM_139126)	-422	NM_139126	85313		NM_139126	ENSG00000131013	PPIL4	HDCME13P	peptidylprolyl isomerase like 4	protein-coding
208488	chr7	67284451	67284800	+	0	NA	intron (NM_001382715, intron 5 of 7)	intron (NM_001382715, intron 5 of 7)	6333	NM_001382715	442572		NM_001382715	ENSG00000230358	SPDYE21	SPDYE21P	speedy/RINGO cell cycle regulator family member E21	protein-coding
149531	chr21	33019851	33021000	+	0	NA	Intergenic	Intergenic	-5510	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
205403	chr7	16399821	16400200	+	0	NA	intron (NR_160656, intron 2 of 7)	intron (NR_160656, intron 2 of 7)	21528	NM_001101417	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
41704	chr11	66645821	66646100	+	0	NA	intron (NM_002896, intron 3 of 3)	intron (NM_002896, intron 3 of 3)	7257	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
20872	chr1	202129971	202130700	+	0	NA	3' UTR (NM_004767, exon 2 of 2)	3' UTR (NM_004767, exon 2 of 2)	7418	NM_004767	9283		NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2|ETBRLP2	G protein-coupled receptor 37 like 1	protein-coding
204005	chr7	1874251	1874550	+	0	NA	intron (NM_001304524, intron 16 of 16)	CpG	-30147	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
162984	chr3	49713601	49713850	+	0	NA	intron (NR_135218, intron 28 of 38)	intron (NR_135218, intron 28 of 38)	5959	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
134286	chr2	135865701	135865900	+	0	NA	intron (NM_005915, intron 6 of 16)	intron (NM_005915, intron 6 of 16)	10643	NM_005915	4175		NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
151238	chr21	45284321	45284580	+	0	NA	intron (NM_133635, intron 2 of 8)	intron (NM_133635, intron 2 of 8)	3445	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
168855	chr3	152279671	152280130	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-10274	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
102163	chr17	75129271	75129650	+	0	NA	TTS (NM_001252377)	TTS (NM_001252377)	2282	NR_045513	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
181068	chr5	36688871	36689030	+	0	NA	TTS (NM_001166695)	TTS (NM_001166695)	82344	NM_004172	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
210217	chr7	99312651	99313580	+	0	NA	Intergenic	Intergenic	-12758	NM_001190996	10552		NM_006409	ENSG00000241685	ARPC1A	Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L	actin related protein 2/3 complex subunit 1A	protein-coding
60301	chr13	40641051	40641530	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	25351	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
206822	chr7	37234821	37235100	+	0	NA	intron (NM_014800, intron 7 of 21)	intron (NM_014800, intron 7 of 21)	118708	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
117700	chr19	28632201	28632400	+	0	NA	intron (NR_110759, intron 5 of 9)	L1PA15-16|LINE|L1	25612	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
11232	chr1	88887871	88888030	+	0	NA	intron (NM_001514, intron 1 of 6)	intron (NM_001514, intron 1 of 6)	3617	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
219594	chr8	79991701	79992100	+	0	NA	intron (NM_014018, intron 2 of 2)	MLT1F1|LTR|ERVL-MaLR	38359	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
66003	chr14	58241771	58241930	+	0	NA	Intergenic	Intergenic	-2955	NR_038123	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
76207	chr15	73704601	73705150	+	0	NA	intron (NM_025240, intron 4 of 7)	intron (NM_025240, intron 4 of 7)	20105	NM_001329628	80381		NM_025240	ENSG00000103855	CD276	4Ig-B7-H3|B7-H3|B7H3|B7RP-2	CD276 molecule	protein-coding
60972	chr13	46630751	46631050	+	0	NA	intron (NM_015116, intron 1 of 18)	intron (NM_015116, intron 1 of 18)	77730	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
229829	chr9	125750451	125750750	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	2417	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
29246	chr10	69102801	69103000	+	0	NA	intron (NM_002727, intron 2 of 2)	intron (NM_002727, intron 2 of 2)	14797	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
189730	chr5	176545721	176546230	+	0	NA	intron (NM_001171976, intron 1 of 31)	intron (NM_001171976, intron 1 of 31)	-3367	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
16140	chr1	153667301	153667900	+	0	NA	exon (NM_001267809, exon 6 of 14)	exon (NM_001267809, exon 6 of 14)	3393	NM_004515	3608		NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
186533	chr5	138441201	138441580	+	0	NA	non-coding (NR_073449, exon 3 of 8)	non-coding (NR_073449, exon 3 of 8)	2333	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
51626	chr12	52952121	52952380	+	0	NA	exon (NM_000224, exon 6 of 7)	exon (NM_000224, exon 6 of 7)	-2390	NR_045962	3856		NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
7570	chr1	35168151	35168650	+	0	NA	Intergenic	Intergenic	24745	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
192278	chr6	20409501	20410300	+	0	NA	intron (NM_001243076, intron 1 of 6)	intron (NM_001243076, intron 1 of 6)	6221	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
9364	chr1	47225101	47226130	+	0	NA	exon (NM_001290405, exon 3 of 5)	exon (NM_001290405, exon 3 of 5)	6100	NM_001287347	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
87827	chr16	75626471	75626630	+	0	NA	Intergenic	Intergenic	-3269	NM_001324448	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
216946	chr8	22974301	22974860	+	0	NA	Intergenic	Intergenic	-12671	NM_001160036	23221		NM_015178	ENSG00000008853	RHOBTB2	DBC2|DEE64|EIEE64|p83	Rho related BTB domain containing 2	protein-coding
175324	chr4	68341721	68342580	+	0	NA	intron (NM_001031732, intron 1 of 16)	MLT1G|LTR|ERVL-MaLR	7940	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
11454	chr1	89863321	89864000	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	41721	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
83809	chr16	28829871	28830030	+	0	NA	exon (NM_007245, exon 8 of 22)	exon (NM_007245, exon 8 of 22)	6902	NM_007245	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
43077	chr11	74730521	74730780	+	0	NA	intron (NM_001278473, intron 1 of 10)	intron (NM_001278473, intron 1 of 10)	776	NM_001278473	25884		NM_015424	ENSG00000054938	CHRDL2	BNF1|CHL2	chordin like 2	protein-coding
127012	chr2	36922171	36922780	+	0	NA	intron (NM_003162, intron 2 of 17)	AluJr|SINE|Alu	44061	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
156116	chr22	40095721	40096180	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	51133	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
116196	chr19	17474971	17475730	+	0	NA	intron (NM_198580, intron 1 of 11)	AluJr|SINE|Alu	4826	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
3487	chr1	16015951	16016450	+	0	NA	intron (NM_001349687, intron 2 of 2)	intron (NM_001349687, intron 2 of 2)	1843	NM_001349685	27129		NM_014424	ENSG00000173641	HSPB7	cvHSP	heat shock protein family B (small) member 7	protein-coding
216690	chr8	22162351	22162450	+	0	NA	intron (NM_001385660, intron 3 of 6)	intron (NM_001385660, intron 3 of 6)	602	NM_001317779	6440		NM_003018	ENSG00000168484	SFTPC	BRICD6|PSP-C|SFTP2|SMDP2|SP-C|SP5	surfactant protein C	protein-coding
237063	chrX	103489771	103490200	+	0	NA	Intergenic	Intergenic	29504	NM_080879	142684		NM_080879	ENSG00000172476	RAB40A	RAR2|RAR2A	RAB40A, member RAS oncogene family	protein-coding
183049	chr5	73434471	73434630	+	0	NA	Intergenic	L1ME3|LINE|L1	14227	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
168961	chr3	152384371	152385230	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-43810	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
231181	chr9	129907371	129907530	+	0	NA	intron (NM_001363755, intron 12 of 15)	intron (NM_001363755, intron 12 of 15)	37845	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
42092	chr11	67511371	67511730	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-3388	NM_001271849	10263		NM_005851	ENSG00000167797	CDK2AP2	DOC-1R|DOC1R|p14	cyclin dependent kinase 2 associated protein 2	protein-coding
64072	chr14	22565301	22566180	+	0	NA	intron (NM_001344, intron 2 of 2)	intron (NM_001344, intron 2 of 2)	-8678	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
39341	chr11	59263301	59263600	+	0	NA	Intergenic	Intergenic	-50523	NM_001039396	219972		NM_001039396	ENSG00000197629	MPEG1	IMD77|MPG1|MPS1|Mpg-1|P-2	macrophage expressed 1	protein-coding
224966	chr9	33072071	33072500	+	0	NA	intron (NM_018225, intron 2 of 11)	AluSz|SINE|Alu	4389	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
99242	chr17	49695101	49695800	+	0	NA	Intergenic	L2b|LINE|L2	12514	NM_001278784	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
150094	chr21	37429251	37429650	+	0	NA	intron (NM_101395, intron 3 of 12)	MSTA|LTR|ERVL-MaLR	9151	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
144638	chr20	35950921	35951430	+	0	NA	TTS (NM_016436)	TTS (NM_016436)	3327	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
48175	chr12	7986701	7987500	+	0	NA	Intergenic	AluY|SINE|Alu	-45616	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
110014	chr19	1436451	1437250	+	0	NA	Intergenic	Intergenic	-1546	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
15798	chr1	151280601	151281500	+	0	NA	promoter-TSS (NM_001304764)	promoter-TSS (NM_001304764)	-472	NM_001304764	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
183192	chr5	75716871	75718030	+	0	NA	promoter-TSS (NM_001099271)	promoter-TSS (NM_001099271)	-13	NM_001099271	134359		NM_152408	ENSG00000152359	POC5	C5orf37	POC5 centriolar protein	protein-coding
157888	chr22	49749821	49750650	+	0	NA	Intergenic	Intergenic	74096	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
227919	chr9	94180521	94181130	+	0	NA	intron (NR_160773, intron 2 of 2)	AluSx1|SINE|Alu	1991	NR_029481	406886		NR_029481	ENSG00000199133	MIRLET7D	LET7D|MIRNLET7D|hsa-let-7d|let-7d	microRNA let-7d	ncRNA
12656	chr1	109265721	109266130	+	0	NA	intron (NM_001408, intron 14 of 33)	intron (NM_001408, intron 14 of 33)	16386	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
52424	chr12	55816871	55817030	+	0	NA	intron (NM_033082, intron 1 of 10)	intron (NM_033082, intron 1 of 10)	774	NM_033082	84324		NM_033082	ENSG00000205323	SARNP	CIP29|HCC1|HSPC316|THO1	SAP domain containing ribonucleoprotein	protein-coding
160150	chr3	20103751	20105080	+	0	NA	intron (NM_003884, intron 5 of 17)	intron (NM_003884, intron 5 of 17)	-33150	NR_036086	100422901		NR_036086	ENSG00000266745	MIR3135A	MIR3135|hsa-mir-3135a	microRNA 3135a	ncRNA
82064	chr16	13921321	13921580	+	0	NA	intron (NM_005236, intron 1 of 10)	intron (NM_005236, intron 1 of 10)	1296	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
238111	chrX	136639321	136639930	+	0	NA	promoter-TSS (NR_038461)	promoter-TSS (NR_038461)	82	NR_038461	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
9893	chr1	54371801	54372200	+	0	NA	intron (NM_145716, intron 4 of 17)	MIRc|SINE|MIR	34394	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
128909	chr2	64214001	64215000	+	0	NA	Intergenic	Intergenic	-9015	NR_033837	150992		NR_033837	ENSG00000230923	LINC00309	NCRNA00309	long intergenic non-protein coding RNA 309	ncRNA
134663	chr2	144463901	144464130	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-55599	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
202280	chr6	157106101	157106300	+	0	NA	intron (NM_001371656, intron 7 of 20)	intron (NM_001371656, intron 7 of 20)	69773	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
215893	chr8	8058971	8059680	+	0	NA	Intergenic	CpG	29764	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
25165	chr10	5369971	5370280	+	0	NA	intron (NM_053049, intron 1 of 1)	intron (NM_053049, intron 1 of 1)	5159	NM_053049	114131		NM_053049	ENSG00000178473	UCN3	SCP|SPC|UCNIII	urocortin 3	protein-coding
71595	chr14	106539601	106540250	+	0	NA	Intergenic	LTR13_|LTR|ERVK	57486	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
142407	chr20	3883451	3883750	+	0	NA	Intergenic	AluY|SINE|Alu	-5181	NM_024960	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
34081	chr10	125141951	125142050	+	0	NA	intron (NM_001290214, intron 1 of 10)	intron (NM_001290214, intron 1 of 10)	16777	NM_001321013	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
82998	chr16	22186701	22187000	+	0	NA	intron (NM_001365288, intron 11 of 11)	intron (NM_001365288, intron 11 of 11)	-19428	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
78283	chr15	90881501	90881700	+	0	NA	non-coding (NR_168464, exon 16 of 16)	non-coding (NR_168464, exon 16 of 16)	-2904	NM_002005	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
30792	chr10	84363401	84364230	+	0	NA	intron (NM_001284241, intron 1 of 2)	Tigger3c|DNA|TcMar-Tigger	35226	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
68087	chr14	75285001	75285740	+	0	NA	Intergenic	Intergenic	6542	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
181172	chr5	39062051	39062850	+	0	NA	intron (NM_001285439, intron 2 of 38)	intron (NM_001285439, intron 2 of 38)	11949	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
137101	chr2	190961101	190961450	+	0	NA	intron (NM_014905, intron 17 of 17)	AluSz6|SINE|Alu	52896	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
69398	chr14	94046471	94046980	+	0	NA	3' UTR (NM_023112, exon 6 of 6)	3' UTR (NM_023112, exon 6 of 6)	20385	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
26971	chr10	26710371	26710600	+	0	NA	intron (NM_001321978, intron 5 of 9)	AluSx|SINE|Alu	12784	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
128659	chr2	61449921	61450580	+	0	NA	intron (NM_014709, intron 1 of 79)	L1MB8|LINE|L1	20837	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
4214	chr1	19459601	19460330	+	0	NA	intron (NM_001206541, intron 1 of 8)	Tigger7|DNA|TcMar-Tigger	24330	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
145809	chr20	45427151	45427600	+	0	NA	promoter-TSS (NR_159957)	promoter-TSS (NR_159957)	-47	NR_159957	105372631		NR_159957		LOC105372631	-	uncharacterized LOC105372631	ncRNA
25190	chr10	5628651	5629100	+	0	NA	Intergenic	Intergenic	-32757	NR_134491	105376382		NR_134491	ENSG00000242147	LASTR	LINC02657	lncRNA associated with SART3 regulation of splicing	ncRNA
71560	chr14	106348951	106349850	+	0	NA	Intergenic	Intergenic	61726	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
88509	chr16	85308501	85309100	+	0	NA	Intergenic	Intergenic	-2475	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
26302	chr10	14975471	14976130	+	0	NA	intron (NR_147060, intron 1 of 2)	SATR1|Satellite|Satellite	16412	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
78076	chr15	90219271	90220100	+	0	NA	intron (NM_001324034, intron 3 of 13)	intron (NM_001324034, intron 3 of 13)	14256	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
218567	chr8	54551751	54551850	+	0	NA	Intergenic	Intergenic	-7385	NM_001375654	6101		NM_006269	ENSG00000104237	RP1	DCDC4A|ORP1	RP1 axonemal microtubule associated	protein-coding
189366	chr5	172571401	172571600	+	0	NA	Intergenic	Intergenic	-12486	NR_146726	105377728		NR_146726	ENSG00000254299	LINC01944	CTB-54I1.1	long intergenic non-protein coding RNA 1944	ncRNA
31243	chr10	91923201	91924600	+	0	NA	non-coding (NR_165099, exon 1 of 39)	non-coding (NR_165099, exon 1 of 39)	130	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
195177	chr6	36024871	36025030	+	0	NA	promoter-TSS (NM_138718)	promoter-TSS (NM_138718)	-309	NM_001193476	116369		NM_052961	ENSG00000112053	SLC26A8	AZON|SPGF3|TAT1	solute carrier family 26 member 8	protein-coding
197964	chr6	89979321	89979580	+	0	NA	intron (NM_021813, intron 6 of 8)	L2c|LINE|L2	84981	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
180927	chr5	34538021	34538280	+	0	NA	Intergenic	LTR27C|LTR|ERV1	-118178	NM_001145522	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
125270	chr2	10445401	10446050	+	0	NA	TTS (NR_028374)	TTS (NR_028374)	1124	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
155585	chr22	38749701	38750100	+	0	NA	intron (NM_001199580, intron 6 of 18)	intron (NM_001199580, intron 6 of 18)	5566	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
63185	chr13	113733401	113734000	+	0	NA	intron (NM_002929, intron 6 of 6)	intron (NM_002929, intron 6 of 6)	17389	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
211780	chr7	107565551	107565650	+	0	NA	intron (NR_163939, intron 2 of 13).2	AluJr|SINE|Alu	1629	NM_001371367	115253422		NM_001371364	ENSG00000288558	DUS4L-BCAP29	-	DUS4L-BCAP29 readthrough	protein-coding
173956	chr4	25916071	25916430	+	0	NA	intron (NM_001145432, intron 1 of 2)	AluSx1|SINE|Alu	2058	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
202334	chr6	157486721	157487000	+	0	NA	intron (NM_024630, intron 1 of 8)	intron (NM_024630, intron 1 of 8)	-42272	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
130152	chr2	74966921	74967180	+	0	NA	intron (NM_019896, intron 3 of 3)	L1ME3B|LINE|L1	8407	NM_019896	56655		NM_019896	ENSG00000115350	POLE4	YHHQ1|p12	DNA polymerase epsilon 4, accessory subunit	protein-coding
51448	chr12	52044171	52044530	+	0	NA	intron (NM_001202233, intron 2 of 7)	intron (NM_001202233, intron 2 of 7)	6635	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
112500	chr19	6463871	6464750	+	0	NA	promoter-TSS (NM_174881)	promoter-TSS (NM_174881)	39	NM_174881	92359		NM_139161	ENSG00000130545	CRB3	-	crumbs cell polarity complex component 3	protein-coding
30981	chr10	88037771	88037930	+	0	NA	Intergenic	Intergenic	174225	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
228002	chr9	95513651	95514350	+	0	NA	intron (NM_001083603, intron 1 of 23)	intron (NM_001083603, intron 1 of 23)	2971	NM_001083603	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
150406	chr21	42337721	42338630	+	0	NA	Intergenic	Intergenic	12819	NM_005423	7032		NM_005423	ENSG00000160181	TFF2	SML1|SP	trefoil factor 2	protein-coding
202001	chr6	152566021	152566750	+	0	NA	intron (NM_033071, intron 2 of 145)	intron (NM_033071, intron 2 of 145)	70466	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
134764	chr2	147182021	147182680	+	0	NA	Intergenic	L1PA7|LINE|L1	595293	NR_026904	728773		NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
24425	chr1	243508211	243508900	+	0	NA	intron (NM_005465, intron 13 of 13)	intron (NM_005465, intron 13 of 13)	162379	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
218710	chr8	58608471	58609130	+	0	NA	intron (NM_003580, intron 10 of 30)	intron (NM_003580, intron 10 of 30)	50607	NM_001144772	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
26748	chr10	22700071	22700680	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	13733	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
136466	chr2	177175851	177176150	+	0	NA	Intergenic	Intergenic	36411	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
173606	chr4	10722971	10723230	+	0	NA	Intergenic	MER51B|LTR|ERV1	-38332	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
37925	chr11	34198371	34198780	+	0	NA	intron (NM_145804, intron 2 of 16)	MIRb|SINE|MIR	92946	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
6226	chr1	27517621	27518080	+	0	NA	Intergenic	AluSx3|SINE|Alu	-27683	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
121757	chr19	47755951	47756050	+	0	NA	TTS (NR_003048)	TTS (NR_003048)	147	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
224612	chr9	20458101	20458300	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	44142	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
24373	chr1	241639721	241641630	+	0	NA	promoter-TSS (NM_001381853)	promoter-TSS (NM_001381853)	-306	NM_001381854	1122		NM_001821	ENSG00000203668	CHML	REP2	CHM like Rab escort protein	protein-coding
96306	chr17	39960221	39960580	+	0	NA	Intergenic	Intergenic	-2604	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
96455	chr17	40221101	40221780	+	0	NA	intron (NM_133264, intron 1 of 7)	intron (NM_133264, intron 1 of 7)	2136	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
70494	chr14	102095971	102097130	+	0	NA	intron (NM_001017963, intron 2 of 11)	intron (NM_001017963, intron 2 of 11)	-9506	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
239405	chrY	23704971	23705130	+	0	NA	Intergenic	L1PA3|LINE|L1	236572	NR_002176	474148		NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis expressed transcript, Y-linked 3B	ncRNA
86284	chr16	58606651	58607050	+	0	NA	intron (NM_206999, intron 1 of 30)	intron (NM_206999, intron 1 of 30)	22976	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
42322	chr11	68477721	68477980	+	0	NA	intron (NM_001352362, intron 2 of 24)	intron (NM_001352362, intron 2 of 24)	17098	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
107955	chr18	58302801	58303000	+	0	NA	intron (NM_001243960, intron 5 of 28)	intron (NM_001243960, intron 5 of 28)	81329	NM_001144966	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
102310	chr17	75360701	75361600	+	0	NA	intron (NM_203506, intron 2 of 4)	MIRb|SINE|MIR	44528	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
140708	chr2	234372021	234372650	+	0	NA	Intergenic	Intergenic	82260	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
125543	chr2	15178471	15179260	+	0	NA	intron (NR_052013, intron 50 of 50)	intron (NR_052013, intron 50 of 50)	382469	NM_015909	51594		NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	NBAS subunit of NRZ tethering complex	protein-coding
222856	chr8	142634501	142635180	+	0	NA	Intergenic	Intergenic	-3756	NR_134305	101928087		NR_134305	ENSG00000277332	LOC101928087	-	uncharacterized LOC101928087	ncRNA
116072	chr19	17236821	17237080	+	0	NA	intron (NM_005234, intron 2 of 3)	intron (NM_005234, intron 2 of 3)	8392	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
7820	chr1	36297501	36297700	+	0	NA	intron (NM_001321471, intron 10 of 12)	AluSx3|SINE|Alu	-8768	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
136498	chr2	177234671	177235430	+	0	NA	intron (NM_001313902, intron 1 of 3)	AluSx|SINE|Alu	20960	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
141195	chr2	239317151	239317250	+	0	NA	intron (NM_006037, intron 2 of 26)	L1MC4|LINE|L1	11738	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
2479	chr1	9667071	9667600	+	0	NA	intron (NM_005026, intron 1 of 23)	intron (NM_005026, intron 1 of 23)	-12749	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
185785	chr5	132409021	132409580	+	0	NA	Intergenic	Intergenic	-1629	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
120423	chr19	43983901	43984780	+	0	NA	5' UTR (NM_001260486, exon 1 of 5)	5' UTR (NM_001260486, exon 1 of 5)	152	NM_198089	7711		NM_003445	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
153147	chr22	23770021	23770280	+	0	NA	Intergenic	AluSc|SINE|Alu	-2178	NM_213720	400916		NM_213720	ENSG00000250479	CHCHD10	C22orf16|FTDALS2|IMMD|MIX17A|N27C7-4|SMAJ	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding
107605	chr18	48918421	48918800	+	0	NA	Intergenic	AluSx|SINE|Alu	24197	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
183076	chr5	73666801	73667200	+	0	NA	intron (NM_001177693, intron 1 of 35)	MER72|LTR|ERV1	40842	NM_001177693	64283		NM_022448	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding
118734	chr19	38281801	38282300	+	0	NA	intron (NM_001166103, intron 1 of 5)	intron (NM_001166103, intron 1 of 5)	17477	NM_001166103	10653		NM_021102	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	serine peptidase inhibitor, Kunitz type 2	protein-coding
37717	chr11	30635571	30635730	+	0	NA	Intergenic	Intergenic	-49297	NR_165336	744		NM_001584	ENSG00000066382	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding
27606	chr10	32891171	32891680	+	0	NA	Intergenic	HERVL74-int|LTR|ERVL	10047	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
47789	chr12	6569351	6569850	+	0	NA	TTS (NM_001363606)	TTS (NM_001363606)	-1309	NM_001258308	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
161477	chr3	42369371	42369600	+	0	NA	Intergenic	Intergenic	41125	NM_144634	131375		NM_144634	ENSG00000157093	LYZL4	LYC4|LYZA	lysozyme like 4	protein-coding
7483	chr1	33178271	33178730	+	0	NA	intron (NM_018207, intron 1 of 4)	intron (NM_018207, intron 1 of 4)	-1950	NM_001330483	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
107861	chr18	54852871	54853030	+	0	NA	intron (NM_004163, intron 1 of 5)	intron (NM_004163, intron 1 of 5)	24473	NM_004163	5874		NM_004163	ENSG00000041353	RAB27B	C25KG	RAB27B, member RAS oncogene family	protein-coding
66871	chr14	65078301	65078750	+	0	NA	intron (NM_145113, intron 3 of 5)	(TGT)n|Simple_repeat|Simple_repeat	-11393	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
213917	chr7	142536451	142536550	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	61973	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
110881	chr19	2635151	2635650	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	4685	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
5395	chr1	25477571	25477930	+	0	NA	intron (NM_018202, intron 6 of 10)	intron (NM_018202, intron 6 of 10)	46853	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
216979	chr8	23070371	23071580	+	0	NA	intron (NR_038873, intron 1 of 2)	LTR12C|LTR|ERV1	-1944	NM_003842	8795		NM_003842	ENSG00000120889	TNFRSF10B	CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9	TNF receptor superfamily member 10b	protein-coding
174182	chr4	36320851	36321250	+	0	NA	intron (NR_165630, intron 9 of 10)	intron (NR_165630, intron 9 of 10)	39434	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
198470	chr6	106183451	106183780	+	0	NA	TTS (NM_001286111)	TTS (NM_001286111)	84674	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
75056	chr15	64166651	64166950	+	0	NA	3' UTR (NM_022048, exon 12 of 12)	3' UTR (NM_022048, exon 12 of 12)	-3778	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
234537	chrX	19674051	19674580	+	0	NA	intron (NM_001353892, intron 7 of 17)	MamRep1879|DNA|hAT-Tip100?	-3316	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
104539	chr17	81286721	81287250	+	0	NA	intron (NM_001037984, intron 2 of 15)	intron (NM_001037984, intron 2 of 15)	8322	NM_001037984	124565		NM_138570	ENSG00000157637	SLC38A10	PP1744|SNAT10	solute carrier family 38 member 10	protein-coding
182888	chr5	70049271	70050800	+	0	NA	intron (NM_022874, intron 1 of 7)	L2|LINE|L2	366	NM_000344	6606		NM_000344	ENSG00000172062	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
109708	chr19	1062651	1063830	+	0	NA	intron (NM_019112, intron 42 of 46)	intron (NM_019112, intron 42 of 46)	-2719	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
18298	chr1	161152871	161154930	+	0	NA	promoter-TSS (NM_016406)	promoter-TSS (NM_016406)	-78	NM_016406	51506		NM_016406	ENSG00000143222	UFC1	HSPC155|NEDSG	ubiquitin-fold modifier conjugating enzyme 1	protein-coding
118633	chr19	37271851	37271950	+	0	NA	Intergenic	SST1|Satellite|centr	-2890	NR_029390	284412		NR_029390		LOC284412	-	Putative uncharacterized protein PP6455	ncRNA
73650	chr15	44707021	44707280	+	0	NA	Intergenic	L1MA3|LINE|L1	-4367	NM_004048	567		NM_004048	ENSG00000166710	B2M	IMD43	beta-2-microglobulin	protein-coding
46581	chr11	128508771	128509430	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	13210	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
66178	chr14	60653151	60653650	+	0	NA	Intergenic	Intergenic	-3923	NM_005982	6495		NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
189398	chr5	172757821	172758080	+	0	NA	intron (NR_161233, intron 1 of 3)	L2b|LINE|L2	2447	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
97602	chr17	44118221	44118950	+	0	NA	intron (NM_005474, intron 1 of 26)	intron (NM_005474, intron 1 of 26)	2673	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
206795	chr7	36788931	36789500	+	0	NA	Intergenic	Intergenic	-64666	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
69156	chr14	92580721	92580980	+	0	NA	intron (NM_024832, intron 3 of 9)	MLT1J1|LTR|ERVL-MaLR	4616	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
96937	chr17	42172601	42172800	+	0	NA	intron (NM_012285, intron 6 of 16)	MIR|SINE|MIR	8442	NM_012285	23415		NM_012285	ENSG00000089558	KCNH4	BEC2|ELK1|Kv12.3	potassium voltage-gated channel subfamily H member 4	protein-coding
232233	chr9	134381501	134383030	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	2854	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
178935	chr4	158902471	158903030	+	0	NA	intron (NM_001366843, intron 17 of 17)	L1PA7|LINE|L1	96911	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
181404	chr5	40692101	40692780	+	0	NA	3' UTR (NM_000958, exon 3 of 3)	3' UTR (NM_000958, exon 3 of 3)	12525	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
179225	chr4	173530451	173530950	+	0	NA	promoter-TSS (NM_021973)	promoter-TSS (NM_021973)	242	NR_003679	79804		NR_003679	ENSG00000237125	HAND2-AS1	DEIN|NBLA00301|UPH	HAND2 antisense RNA 1	ncRNA
172201	chr4	1277901	1278200	+	0	NA	Intergenic	L1MB5|LINE|L1	-11841	NM_005882	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
195199	chr6	36108571	36109750	+	0	NA	3' UTR (NM_139012, exon 12 of 12)	3' UTR (NM_139012, exon 12 of 12)	-21353	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
167005	chr3	125984901	125985230	+	0	NA	intron (NM_001385066, intron 1 of 6)	intron (NM_001385066, intron 1 of 6)	5472	NM_001385068	200810		NM_001015050	ENSG00000291096	ALG1L1P	ALG1L|ALG1L1	ALG1 like 1, pseudogene	pseudo
84358	chr16	30220651	30220950	+	0	NA	Intergenic	AluJr|SINE|Alu	-13873	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
148258	chr20	63657671	63659100	+	0	NA	promoter-TSS (NM_016434)	promoter-TSS (NM_016434)	73	NM_001283009	51750		NM_015647	ENSG00000258366	RTEL1	C20orf41|DKCA4|DKCB5|NHL|PFBMFT3|RTEL	regulator of telomere elongation helicase 1	protein-coding
145612	chr20	44648671	44648950	+	0	NA	intron (NR_136160, intron 1 of 10)	MER5A1|DNA|hAT-Charlie	2889	NM_000022	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
195042	chr6	35487471	35487630	+	0	NA	intron (NM_003214, intron 1 of 12)	AluSg|SINE|Alu	9529	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
3436	chr1	15876451	15876700	+	0	NA	exon (NM_015001, exon 3 of 15)	exon (NM_015001, exon 3 of 15)	-28428	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
87628	chr16	74407351	74407450	+	0	NA	promoter-TSS (NR_135170)	promoter-TSS (NR_135170)	-181	NR_135170	105376772		NR_135170		LOC105376772	-	uncharacterized LOC105376772	ncRNA
12525	chr1	108512351	108513080	+	0	NA	Intergenic	Intergenic	-47385	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
180402	chr5	10348171	10348750	+	0	NA	Intergenic	L2b|LINE|L2	-5235	NM_005885	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
120231	chr19	42321951	42322680	+	0	NA	intron (NM_173633, intron 13 of 14)	MIRc|SINE|MIR	-3320	NM_001271938	1954		NM_001410	ENSG00000105429	MEGF8	C19orf49|CRPT2|EGFL4|SBP1	multiple EGF like domains 8	protein-coding
46996	chr12	104471	105000	+	0	NA	intron (NM_015232, intron 2 of 12).2	CpG	27359	NM_015232	440073		NM_015232	ENSG00000120645	IQSEC3	-	IQ motif and Sec7 domain ArfGEF 3	protein-coding
60470	chr13	41130401	41130850	+	0	NA	exon (NM_152903, exon 1 of 1)	exon (NM_152903, exon 1 of 1)	2177	NM_152903	89890		NM_152903	ENSG00000165572	KBTBD6	-	kelch repeat and BTB domain containing 6	protein-coding
6373	chr1	27871871	27873000	+	0	NA	promoter-TSS (NM_004848)	promoter-TSS (NM_004848)	-108	NM_004848	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
220307	chr8	98358101	98358330	+	0	NA	Intergenic	Intergenic	35523	NR_162095	113218497		NR_162095		MIR9903	-	microRNA 9903	ncRNA
129434	chr2	69462621	69463080	+	0	NA	3' UTR (NM_014911, exon 22 of 22)	3' UTR (NM_014911, exon 22 of 22)	-23283	NM_001374284	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
99118	chr17	49217821	49218580	+	0	NA	intron (NM_001135186, intron 3 of 7)	intron (NM_001135186, intron 3 of 7)	7493	NM_016428	51225		NM_016428	ENSG00000108798	ABI3	NESH|SSH3BP3	ABI family member 3	protein-coding
41513	chr11	66261201	66262100	+	0	NA	intron (NM_001134774, intron 2 of 14)	intron (NM_001134774, intron 2 of 14)	3947	NM_001134774	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
32695	chr10	103983051	103984100	+	0	NA	intron (NM_014720, intron 1 of 18)	LTR50|LTR|ERVL	16435	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
172080	chr4	1037901	1038100	+	0	NA	Intergenic	Intergenic	25536	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
159362	chr3	13312501	13313150	+	0	NA	Intergenic	AluY|SINE|Alu	-29568	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
9288	chr1	46422201	46423000	+	0	NA	Intergenic	L2a|LINE|L2	-11227	NR_045483	729041		NR_045483		FAAHP1	FAAH-OUT|FAAHOUT|LINC00505	fatty acid amide hydrolase pseudogene 1	pseudo
105821	chr18	2967351	2968030	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	-21067	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
192136	chr6	16764101	16765200	+	0	NA	non-coding (NR_136240, exon 3 of 3)	non-coding (NR_136240, exon 3 of 3)	-3160	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
103181	chr17	77447701	77447900	+	0	NA	intron (NM_001293696, intron 1 of 9)	AluSx|SINE|Alu	-2949	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
212473	chr7	128525551	128526080	+	0	NA	Intergenic	Intergenic	49067	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
56387	chr12	113183321	113183580	+	0	NA	intron (NM_024072, intron 1 of 19)	L2b|LINE|L2	2028	NM_024072	79039		NM_024072	ENSG00000123064	DDX54	DP97	DEAD-box helicase 54	protein-coding
99811	chr17	51488051	51488150	+	0	NA	Intergenic	Intergenic	52673	NR_146897	105371828		NR_146897	ENSG00000267452	LINC02073	-	long intergenic non-protein coding RNA 2073	ncRNA
139245	chr2	219382071	219382230	+	0	NA	intron (NR_134970, intron 8 of 12)	intron (NR_134970, intron 8 of 12)	5212	NM_001319118	23549		NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
75744	chr15	68289151	68289450	+	0	NA	intron (NM_015322, intron 1 of 1)	intron (NM_015322, intron 1 of 1)	11555	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
93604	chr17	19139621	19140300	+	0	NA	intron (NM_001353418, intron 3 of 3)	L2a|LINE|L2	12371	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
68439	chr14	81480571	81481080	+	0	NA	intron (NM_005065, intron 19 of 20)	Charlie2a|DNA|hAT-Charlie	-30668	NR_109999	100506700		NR_109999		LINC02308	-	long intergenic non-protein coding RNA 2308	ncRNA
187451	chr5	142116751	142116850	+	0	NA	intron (NM_030571, intron 1 of 7)	AluSz6|SINE|Alu	8021	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
151176	chr21	44981771	44982150	+	0	NA	Intergenic	Intergenic	12126	NR_033840	727699		NR_033840	ENSG00000234880	LINC00163	C21orf134|NCRNA00163|NLC1-A|NLC1A	long intergenic non-protein coding RNA 163	ncRNA
9459	chr1	50425921	50426280	+	0	NA	Intergenic	Intergenic	-2657	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
154455	chr22	35410051	35410550	+	0	NA	intron (NM_006739, intron 6 of 16)	intron (NM_006739, intron 6 of 16)	10160	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
142922	chr20	18464071	18464830	+	0	NA	intron (NM_001351684, intron 2 of 20)	MIRb|SINE|MIR	2580	NM_001351684	55184		NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84	double zinc ribbon and ankyrin repeat domains 1	protein-coding
155053	chr22	37500401	37500600	+	0	NA	intron (NM_014550, intron 11 of 19)	intron (NM_014550, intron 11 of 19)	-14113	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
181047	chr5	36073671	36073900	+	0	NA	Intergenic	L1P4d|LINE|L1	-6903	NR_031764	167127		NM_174914	ENSG00000168671	UGT3A2	-	UDP glycosyltransferase family 3 member A2	protein-coding
32660	chr10	103845971	103846580	+	0	NA	intron (NM_014631, intron 1 of 13)	intron (NM_014631, intron 1 of 13)	9131	NM_014631	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
232421	chr9	136091301	136091700	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	3789	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
51555	chr12	52557301	52557900	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-4455	NM_033448	112802		NM_033448	ENSG00000139648	KRT71	HYPT13|K6IRS1|KRT6IRS|KRT6IRS1	keratin 71	protein-coding
163446	chr3	50599671	50599930	+	0	NA	Intergenic	Intergenic	11974	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
224809	chr9	25076371	25076530	+	0	NA	Intergenic	L1PA3|LINE|L1	-530553	NM_001365008	100129669		NM_001271706	ENSG00000205442	IZUMO3	C9orf134|bA20A20.1	IZUMO family member 3	protein-coding
191805	chr6	14451321	14451580	+	0	NA	Intergenic	Intergenic	-165996	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
208153	chr7	64567221	64567730	+	0	NA	Intergenic	Intergenic	-4348	NM_001130022	340252		NM_178558	ENSG00000173041	ZNF680	-	zinc finger protein 680	protein-coding
216997	chr8	23120101	23120630	+	0	NA	Intergenic	Intergenic	17444	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
30596	chr10	80153571	80153730	+	0	NA	3' UTR (NM_001157, exon 15 of 15)	3' UTR (NM_001157, exon 15 of 15)	20920	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
142044	chr20	1708021	1708480	+	0	NA	intron (NR_164369, intron 1 of 4)	intron (NR_164369, intron 1 of 4)	14042	NR_164369	105369219		NR_164369		SIRPB3P	-	signal regulatory protein beta 3, pseudogene	pseudo
192614	chr6	26054451	26055900	+	0	NA	TTS (NM_005319)	TTS (NM_005319)	1295	NM_005319	3006		NM_005319	ENSG00000187837	H1-2	H1.2|H1C|H1F2|H1s-1|HIST1H1C	H1.2 linker histone, cluster member	protein-coding
131154	chr2	91521451	91521750	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	138349	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
1801	chr1	6185701	6186000	+	0	NA	3' UTR (NM_000983, exon 4 of 4)	3' UTR (NM_000983, exon 4 of 4)	-5529	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
53690	chr12	68483701	68484050	+	0	NA	Intergenic	Intergenic	-32391	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
20362	chr1	197917721	197919080	+	0	NA	intron (NM_020204, intron 1 of 4)	CpG	1028	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
160107	chr3	19702701	19703100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	231317	NM_144715	151651		NM_144715	ENSG00000163576	EFHB	CFAP21	EF-hand domain family member B	protein-coding
229410	chr9	121203251	121203550	+	0	NA	intron (NM_001353053, intron 1 of 25)	7SLRNA|srpRNA|srpRNA	-1531	NM_016322	51552		NM_016322	ENSG00000119396	RAB14	FBP|RAB-14	RAB14, member RAS oncogene family	protein-coding
44853	chr11	114157721	114158180	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	94739	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
97979	chr17	45260271	45260880	+	0	NA	intron (NM_152343, intron 1 of 4)	MIRb|SINE|MIR	-1505	NR_024435	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
209025	chr7	74451971	74453100	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-1371	NM_001199207	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
124167	chr19	56114101	56114930	+	0	NA	intron (NM_001351682, intron 1 of 1)	L2c|LINE|L2	6780	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
194260	chr6	32583971	32584880	+	0	NA	intron (NM_002124, intron 1 of 5)	CpG-23467	5411	NM_002124	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
188344	chr5	151500601	151501100	+	0	NA	Intergenic	Intergenic	21298	NR_106752	102465246		NR_106752	ENSG00000276622	MIR6499	hsa-mir-6499|mir-6499	microRNA 6499	ncRNA
19845	chr1	182888921	182889180	+	0	NA	Intergenic	Intergenic	-49459	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
155359	chr22	38284871	38285230	+	0	NA	Intergenic	AluSc5|SINE|Alu	-12040	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
55096	chr12	98416951	98417130	+	0	NA	Intergenic	MER90a|LTR|ERV1	40105	NR_033801	121456		NR_033801	ENSG00000293147	SLC9A7P1	-	solute carrier family 9 member 7 pseudogene 1	pseudo
33227	chr10	114098801	114099350	+	0	NA	Intergenic	AluSx1|SINE|Alu	55209	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
181229	chr5	39186951	39187670	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	32253	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
54815	chr12	94678671	94678830	+	0	NA	Intergenic	Intergenic	-28193	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
53665	chr12	68403701	68403900	+	0	NA	Intergenic	Intergenic	47684	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
73417	chr15	43091771	43092380	+	0	NA	intron (NM_174916, intron 1 of 46)	AluSc8|SINE|Alu	13963	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
203715	chr7	1060621	1061130	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	5505	NM_001303474	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
96548	chr17	40371101	40371800	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-6713	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
4174	chr1	19418171	19418530	+	0	NA	intron (NM_001313932, intron 2 of 4)	MER102b|DNA|hAT-Charlie	65945	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
37209	chr11	14350101	14350530	+	0	NA	intron (NM_001177314, intron 1 of 5)	MSTB1|LTR|ERVL-MaLR	8170	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
136775	chr2	181460401	181460640	+	0	NA	intron (NM_000885, intron 2 of 27)	intron (NM_000885, intron 2 of 27)	3134	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
7399	chr1	32934321	32935000	+	0	NA	Intergenic	AluSz6|SINE|Alu	30149	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
91835	chr17	7193871	7194430	+	0	NA	intron (NR_135527, intron 14 of 20)	intron (NR_135527, intron 14 of 20)	11037	NM_001321077	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
84196	chr16	29857671	29858030	+	0	NA	TTS (NM_001286586)	TTS (NM_001286586)	5376	NM_006319	10423		NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
133685	chr2	127092051	127092350	+	0	NA	intron (NM_139345, intron 1 of 15)	intron (NM_139345, intron 1 of 15)	-7650	NM_001320642	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
29074	chr10	67897651	67898230	+	0	NA	intron (NM_001142498, intron 3 of 7)	intron (NM_001142498, intron 3 of 7)	6538	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
50232	chr12	46234651	46234750	+	0	NA	intron (NM_001278387, intron 4 of 17)	AluYk4|SINE|Alu	31816	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
192713	chr6	26329571	26329730	+	0	NA	Intergenic	HAL1|LINE|L1	-35509	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
227780	chr9	93124871	93125130	+	0	NA	exon (NM_004148, exon 3 of 4)	exon (NM_004148, exon 3 of 4)	9251	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
180174	chr5	1468001	1468630	+	0	NA	intron (NM_024830, intron 12 of 13)	intron (NM_024830, intron 12 of 13)	-22875	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
153072	chr22	23306551	23307250	+	0	NA	intron (NM_004327, intron 16 of 22)	intron (NM_004327, intron 16 of 22)	-19716	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
126925	chr2	32946371	32947090	+	0	NA	promoter-TSS (NM_206943)	promoter-TSS (NM_206943)	-223	NM_206943	4052		NM_000627	ENSG00000049323	LTBP1	ARCL2E	latent transforming growth factor beta binding protein 1	protein-coding
90366	chr17	1235971	1236330	+	0	NA	Intergenic	AluJb|SINE|Alu	-6428	NM_001322841	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
92803	chr17	16005471	16005780	+	0	NA	intron (NM_017775, intron 6 of 9)	intron (NM_017775, intron 6 of 9)	5801	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
195924	chr6	41785201	41785580	+	0	NA	exon (NM_013397, exon 6 of 8)	exon (NM_013397, exon 6 of 8)	-2304	NM_001134493	100188893		NM_001134493	ENSG00000214736	TOMM6	OBTP|TOM6	translocase of outer mitochondrial membrane 6	protein-coding
133418	chr2	118859101	118859500	+	0	NA	Intergenic	Intergenic	-11652	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
122016	chr19	48606801	48607530	+	0	NA	exon (NM_133498, exon 1 of 1)	exon (NM_133498, exon 1 of 1)	423	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
117757	chr19	29674251	29675250	+	0	NA	3' UTR (NM_024310, exon 2 of 2)	3' UTR (NM_024310, exon 2 of 2)	9289	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
10626	chr1	69587451	69587550	+	0	NA	intron (NM_001366842, intron 1 of 7)	intron (NM_001366842, intron 1 of 7)	18159	NM_001366842	57554		NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding
81882	chr16	11679321	11679780	+	0	NA	TTS (NM_003498)	TTS (NM_003498)	11095	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
107348	chr18	45849851	45850150	+	0	NA	3' UTR (NM_020964, exon 44 of 44)	3' UTR (NM_020964, exon 44 of 44)	24325	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
206478	chr7	33043721	33043980	+	0	NA	intron (NM_001374336, intron 1 of 10)	MIRb|SINE|MIR	-2944	NM_001166118	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
161499	chr3	42534621	42535080	+	0	NA	intron (NM_004624, intron 10 of 12)	intron (NM_004624, intron 10 of 12)	-2244	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
191661	chr6	13430701	13431390	+	0	NA	intron (NM_018988, intron 1 of 1)	MIR|SINE|MIR	-22908	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
116147	chr19	17380551	17380850	+	0	NA	Intergenic	Intergenic	-3358	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
307	chr1	970471	971080	+	0	NA	intron (NM_001160184, intron 5 of 14)	intron (NM_001160184, intron 5 of 14)	4293	NM_001160184	84069		NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
50454	chr12	47738221	47738750	+	0	NA	intron (NM_001098532, intron 24 of 26)	intron (NM_001098532, intron 24 of 26)	-12995	NM_001172439	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
35442	chr11	1448021	1448630	+	0	NA	intron (NM_001256630, intron 12 of 19)	intron (NM_001256630, intron 12 of 19)	32561	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
13908	chr1	119940621	119940890	+	0	NA	exon (NM_024408, exon 19 of 34)	exon (NM_024408, exon 19 of 34)	-44240	NM_021794	11085		NM_021794	ENSG00000134249	ADAM30	svph4	ADAM metallopeptidase domain 30	protein-coding
222580	chr8	140633451	140634500	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	1658	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
59709	chr13	29647821	29648080	+	0	NA	intron (NR_135320, intron 1 of 1)	L1M4|LINE|L1	257	NR_135320	102723345		NR_135320		LOC102723345	-	uncharacterized LOC102723345	ncRNA
104728	chr17	81647251	81647550	+	0	NA	intron (NM_031945, intron 3 of 3)	intron (NM_031945, intron 3 of 3)	5095	NR_110866	83882		NM_031945	ENSG00000182612	TSPAN10	OCSP	tetraspanin 10	protein-coding
118082	chr19	34362571	34362730	+	0	NA	Intergenic	Intergenic	-2090	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
85517	chr16	50778371	50778930	+	0	NA	intron (NM_001378751, intron 7 of 17)	L2a|LINE|L2	-28022	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
171860	chr4	741721	742030	+	0	NA	intron (NM_001317836, intron 7 of 11)	intron (NM_001317836, intron 7 of 11)	36043	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
163479	chr3	50655101	50655300	+	0	NA	Intergenic	MIRb|SINE|MIR	-19727	NM_004947	1795		NM_004947	ENSG00000088538	DOCK3	MOCA|NEDIDHA|PBP	dedicator of cytokinesis 3	protein-coding
151149	chr21	44914901	44915880	+	0	NA	intron (NM_001127491, intron 1 of 15)	intron (NM_001127491, intron 1 of 15)	5509	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
197513	chr6	75753301	75753500	+	0	NA	intron (NR_160538, intron 1 of 32)	intron (NR_160538, intron 1 of 32)	4161	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
180620	chr5	16616151	16618580	+	0	NA	promoter-TSS (NM_001034850)	promoter-TSS (NM_001034850)	-307	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
10448	chr1	66276051	66276900	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-55633	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
166417	chr3	113729201	113729400	+	0	NA	intron (NM_025146, intron 1 of 4)	L1MEc|LINE|L1	16949	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
113733	chr19	10480301	10480500	+	0	NA	Intergenic	AluY|SINE|Alu	22371	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
114253	chr19	11538621	11539180	+	0	NA	promoter-TSS (NM_001308342)	promoter-TSS (NM_001308342)	49	NM_001308341	1264		NM_001299	ENSG00000130176	CNN1	HEL-S-14|SMCC|Sm-Calp	calponin 1	protein-coding
121700	chr19	47575621	47576000	+	0	NA	Intergenic	AluJb|SINE|Alu	-2662	NM_001277075	84215		NM_032255	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
193356	chr6	30311001	30311400	+	0	NA	intron (NR_102326, intron 1 of 2)	intron (NR_102326, intron 1 of 2)	14934	NR_052012	414778		NR_052012	ENSG00000270604	HCG17	HCG18|LINC00046|NCRNA00046	HLA complex group 17	ncRNA
222669	chr8	141205451	141207180	+	0	NA	TTS (NM_001286646)	TTS (NM_001286646)	22259	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
174205	chr4	37602851	37603500	+	0	NA	intron (NM_001085399, intron 6 of 6)	intron (NM_001085399, intron 6 of 6)	18942	NM_018302	55286		NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
22814	chr1	224637351	224637650	+	0	NA	intron (NM_152495, intron 1 of 5)	intron (NM_152495, intron 1 of 5)	21183	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
66361	chr14	61466271	61466780	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	103669	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
177364	chr4	110510851	110511300	+	0	NA	intron (NR_166844, intron 5 of 19)	intron (NR_166844, intron 5 of 19)	34920	NM_001379613	2028		NM_001977	ENSG00000138792	ENPEP	APA|CD249|gp160	glutamyl aminopeptidase	protein-coding
135344	chr2	160393501	160394680	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	13792	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
111012	chr19	3052021	3052350	+	0	NA	TTS (NM_001130)	TTS (NM_001130)	-4550	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
151092	chr21	44838301	44838700	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-20371	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
60063	chr13	33540801	33541000	+	0	NA	intron (NM_001243476, intron 3 of 17)	L2|LINE|L2	135894	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
70267	chr14	101720671	101720830	+	0	NA	Intergenic	AluJb|SINE|Alu	-9687	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
420	chr1	1082521	1082780	+	0	NA	3' UTR (NM_001330306, exon 12 of 12)	3' UTR (NM_001330306, exon 12 of 12)	-8344	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
112557	chr19	6564451	6564780	+	0	NA	Intergenic	Intergenic	26535	NM_001330332	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
48416	chr12	9670851	9672000	+	0	NA	intron (NM_001197317, intron 1 of 3)	AluY|SINE|Alu	1712	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
15433	chr1	150284351	150284450	+	0	NA	intron (NM_001300838, intron 3 of 5)	intron (NM_001300838, intron 3 of 5)	1846	NM_001300838	148523		NM_144697	ENSG00000159208	CIART	C1orf51|CHRONO|GM129	circadian associated repressor of transcription	protein-coding
67338	chr14	69651821	69652080	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	40354	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
26124	chr10	13659371	13659530	+	0	NA	exon (NM_001318337, exon 20 of 24)	exon (NM_001318337, exon 20 of 24)	48117	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
153168	chr22	23800471	23800630	+	0	NA	intron (NM_003073, intron 3 of 8).2	intron (NM_003073, intron 3 of 8).2	13584	NM_001007468	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
196480	chr6	43583901	43584250	+	0	NA	intron (NM_001291969, intron 2 of 8)	AluJb|SINE|Alu	7890	NM_001291970	5429		NM_006502	ENSG00000170734	POLH	RAD30|RAD30A|XP-V|XPV	DNA polymerase eta	protein-coding
105570	chr18	95221	95550	+	0	NA	Intergenic	Intergenic	-13680	NR_033770	727758		NR_033770	ENSG00000290877	ROCK1P1	ROCK1P	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
215071	chr7	154051451	154051750	+	0	NA	promoter-TSS (NM_001290253).2	promoter-TSS (NM_001290253).2	-798	NM_130797	1804		NM_001936	ENSG00000130226	DPP6	DPL1|DPPX|MRD33|VF2	dipeptidyl peptidase like 6	protein-coding
234425	chrX	16825001	16825400	+	0	NA	intron (NM_018360, intron 3 of 9)	L1M5|LINE|L1	38734	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
128898	chr2	64141201	64142100	+	0	NA	intron (NM_020651, intron 1 of 6)	intron (NM_020651, intron 1 of 6)	2770	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
218989	chr8	63010051	63010150	+	0	NA	Intergenic	Intergenic	28706	NM_003878	8836		NM_003878	ENSG00000137563	GGH	GATD10|GH	gamma-glutamyl hydrolase	protein-coding
113634	chr19	10329521	10329930	+	0	NA	intron (NM_133452, intron 2 of 12)	intron (NM_133452, intron 2 of 12)	3804	NM_133452	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
12899	chr1	110395651	110396130	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4808	NM_001201548	9122		NM_004696	ENSG00000168679	SLC16A4	MCT4|MCT5	solute carrier family 16 member 4	protein-coding
235023	chrX	40012171	40013330	+	0	NA	Intergenic	CpG	85208	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
169463	chr3	168095601	168096500	+	0	NA	promoter-TSS (NM_014498)	promoter-TSS (NM_014498)	-126	NM_014498	27333		NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
200056	chr6	129936521	129936800	+	0	NA	Intergenic	Intergenic	-75345	NM_001010876	253582		NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
152451	chr22	20610201	20610400	+	0	NA	Intergenic	Intergenic	-79255	NR_024592	266697		NR_024592		POM121L4P	POM121L1|POM121L1P	POM121 transmembrane nucleoporin like 4, pseudogene	pseudo
22037	chr1	210386251	210386350	+	0	NA	intron (NM_018194, intron 3 of 11).2	AluYa5|SINE|Alu	56934	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
78244	chr15	90716571	90718080	+	0	NA	promoter-TSS (NM_001287247)	promoter-TSS (NM_001287247)	-21	NM_000057	641		NM_000057	ENSG00000197299	BLM	BS|MGRISCE1|RECQ2|RECQL2|RECQL3	BLM RecQ like helicase	protein-coding
142450	chr20	3991951	3992550	+	0	NA	intron (NM_001134338, intron 1 of 6)	intron (NM_001134338, intron 1 of 6)	23308	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
166591	chr3	119034371	119035230	+	0	NA	promoter-TSS (NM_001353324)	promoter-TSS (NM_001353324)	46	NM_001353326	152404		NM_152538	ENSG00000144847	IGSF11	BT-IgSF|BTIGSF|CT119|CXADRL1|Igsf13|VSIG3	immunoglobulin superfamily member 11	protein-coding
5838	chr1	26705971	26707180	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	10560	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
123931	chr19	55370871	55371750	+	0	NA	promoter-TSS (NM_000641)	promoter-TSS (NM_000641)	-847	NM_000641	3589		NM_000641	ENSG00000095752	IL11	AGIF|IL-11	interleukin 11	protein-coding
64963	chr14	36317551	36317900	+	0	NA	intron (NM_016586, intron 1 of 8)	intron (NM_016586, intron 1 of 8)	2912	NM_001308110	51562		NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
145998	chr20	46405071	46405230	+	0	NA	intron (NM_001318253, intron 1 of 21)	L2b|LINE|L2	1465	NM_001318253	63916		NM_022086	ENSG00000062598	ELMO2	CED-12|CED12|Ced-12A|ELMO-2|VMPI	engulfment and cell motility 2	protein-coding
14589	chr1	145214251	145215490	+	0	NA	promoter-TSS (NR_148945)	promoter-TSS (NR_148945)	19	NR_148945	100996740		NR_148945		LOC100996740	-	uncharacterized LOC100996740	ncRNA
211919	chr7	112453421	112453750	+	0	NA	intron (NM_001197079, intron 1 of 11)	intron (NM_001197079, intron 1 of 11)	1527	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
31284	chr10	92516721	92517580	+	0	NA	intron (NR_136399, intron 4 of 25)	intron (NR_136399, intron 4 of 25)	-19389	NM_001165946	3416		NM_004969	ENSG00000119912	IDE	INSULYSIN	insulin degrading enzyme	protein-coding
178706	chr4	152643271	152644000	+	0	NA	intron (NM_152680, intron 4 of 6)	intron (NM_152680, intron 4 of 6)	36362	NM_152680	201799		NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding
113116	chr19	8301201	8301600	+	0	NA	TTS (NM_001165895)	TTS (NM_001165895)	6958	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
16017	chr1	152052401	152053300	+	0	NA	Intergenic	Intergenic	-15846	NM_005620	6282		NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding
153196	chr22	23851351	23851650	+	0	NA	intron (NR_003082, intron 4 of 4)	AluJr|SINE|Alu	-5203	NR_104248	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
235329	chrX	43655901	43656900	+	0	NA	exon (NM_000240, exon 1 of 15)	exon (NM_000240, exon 1 of 15)	101	NM_000240	4128		NM_000240	ENSG00000189221	MAOA	BRNRS|MAO-A	monoamine oxidase A	protein-coding
105327	chr17	82590601	82591030	+	0	NA	intron (NM_004514, intron 8 of 8)	intron (NM_004514, intron 8 of 8)	57629	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
92071	chr17	7518501	7519330	+	0	NA	Intergenic	AluSx|SINE|Alu	-30143	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
213610	chr7	139423121	139423380	+	0	NA	3' UTR (NM_001270643, exon 11 of 11)	3' UTR (NM_001270643, exon 11 of 11)	4276	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
210854	chr7	101092101	101093230	+	0	NA	3' UTR (NM_030961, exon 3 of 3)	3' UTR (NM_030961, exon 3 of 3)	7184	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
76719	chr15	76058871	76059050	+	0	NA	Intergenic	Intergenic	-1025	NM_152335	123591		NM_152335	ENSG00000169758	TMEM266	C15orf27|HVRP1|HsHVRP1|hTMEM266	transmembrane protein 266	protein-coding
105243	chr17	82400551	82401330	+	0	NA	intron (NM_175902, intron 7 of 9)	intron (NM_175902, intron 7 of 9)	-17407	NM_173620	284004		NM_173620	ENSG00000169660	HEXD	HEXDC	hexosaminidase D	protein-coding
220801	chr8	102674871	102675230	+	0	NA	intron (NR_160672, intron 3 of 4)	intron (NR_160672, intron 3 of 4)	18802	NR_160673	101927245		NR_160672	ENSG00000283959	LOC101927245	-	uncharacterized LOC101927245	ncRNA
23613	chr1	230169671	230170480	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	102837	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
24863	chr10	657921	658180	+	0	NA	intron (NM_014974, intron 1 of 36)	intron (NM_014974, intron 1 of 36)	8015	NM_001355390	414235		NM_001012714	ENSG00000180525	DIP2C-AS1	C10orf108|PRR26	DIP2C antisense RNA 1	ncRNA
56189	chr12	111439801	111440230	+	0	NA	intron (NM_001291424, intron 1 of 6)	intron (NM_001291424, intron 1 of 6)	5153	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
128866	chr2	64023901	64024100	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-4572	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
40352	chr11	63960851	63960950	+	0	NA	Intergenic	Intergenic	-13720	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
198335	chr6	104623071	104623250	+	0	NA	Intergenic	Intergenic	236386	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
39649	chr11	61580821	61582080	+	0	NA	promoter-TSS (NM_001300773)	promoter-TSS (NM_001300773)	-374	NM_001370211	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
94154	chr17	28356571	28358130	+	0	NA	promoter-TSS (NM_152464)	promoter-TSS (NM_152464)	177	NM_015584	26073		NM_015584	ENSG00000004142	POLDIP2	PDIP38|POLD4|p38	DNA polymerase delta interacting protein 2	protein-coding
186112	chr5	134135021	134135680	+	0	NA	intron (NM_001366502, intron 1 of 7)	L2b|LINE|L2	11732	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
145966	chr20	46313671	46313830	+	0	NA	Intergenic	Intergenic	-5252	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
17164	chr1	156210921	156211200	+	0	NA	non-coding (NR_104408, exon 4 of 4)	non-coding (NR_104408, exon 4 of 4)	-1928	NM_001199663	100527963		NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF-1|PMF1	PMF1-BGLAP readthrough	protein-coding
119875	chr19	41501351	41501680	+	0	NA	promoter-TSS (NR_136334)	promoter-TSS (NR_136334)	-866	NR_040109	100505495		NR_040109	ENSG00000267107	PCAT19	LINC01190	prostate cancer associated transcript 19	ncRNA
225638	chr9	36335321	36335580	+	0	NA	TTS (NM_022781)	TTS (NM_022781)	-58472	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
119340	chr19	39959851	39960150	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-11005	NM_153001	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
77511	chr15	84661521	84661780	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3451	NM_021077	4828		NM_021077	ENSG00000197696	NMB	-	neuromedin B	protein-coding
62914	chr13	110965371	110965530	+	0	NA	promoter-TSS (NR_126378)	promoter-TSS (NR_126378)	-577	NR_126378	104355135		NR_126378		LINC00431	-	long intergenic non-protein coding RNA 431	ncRNA
218548	chr8	54020971	54022690	+	0	NA	intron (NM_006756, intron 1 of 9)	CpG	618	NM_006756	6917		NM_006756	ENSG00000187735	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A1	protein-coding
227852	chr9	93566301	93567800	+	0	NA	TTS (NM_014612)	TTS (NM_014612)	-9534	NM_005392	5253		NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding
123759	chr19	55085901	55086250	+	0	NA	exon (NM_017729, exon 11 of 15)	exon (NM_017729, exon 11 of 15)	5683	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
60609	chr13	42056821	42057780	+	0	NA	intron (NM_001204504, intron 2 of 29)	intron (NM_001204504, intron 2 of 29)	8652	NM_178009	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
124239	chr19	57391871	57392250	+	0	NA	intron (NM_152909, intron 1 of 2)	AluSx1|SINE|Alu	2206	NM_001172773	147694		NM_152909	ENSG00000188785	ZNF548	-	zinc finger protein 548	protein-coding
86243	chr16	58236071	58237100	+	0	NA	Intergenic	LTR33|LTR|ERVL	-13351	NM_014157	29070		NM_014157	ENSG00000103021	CFAP263	CCDC113|HSPC065	cilia and flagella associated protein 263	protein-coding
87446	chr16	70770901	70771430	+	0	NA	intron (NR_034083, intron 5 of 5)	intron (NR_034083, intron 5 of 5)	16070	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
55326	chr12	103936251	103937300	+	0	NA	intron (NM_003299, intron 5 of 17)	L2|LINE|L2	6350	NR_037425	100500842		NR_037425	ENSG00000284503	MIR3652	-	microRNA 3652	ncRNA
220665	chr8	101136371	101136530	+	0	NA	Intergenic	AluY|SINE|Alu	33789	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
42104	chr11	67585801	67586380	+	0	NA	intron (NM_000852, intron 5 of 6)	intron (NM_000852, intron 5 of 6)	2278	NM_000852	2950		NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
58303	chr12	130870271	130871200	+	0	NA	Intergenic	Intergenic	-1259	NM_001300796	5901		NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
89314	chr16	88724571	88725330	+	0	NA	intron (NM_001142864, intron 30 of 50)	intron (NM_001142864, intron 30 of 50)	-6230	NR_103774	100289580		NM_207451		HSALR1	-	HSP90AB1 associated lncRNA 1	ncRNA
16834	chr1	155662771	155662930	+	0	NA	intron (NM_139119, intron 9 of 10)	AluSz|SINE|Alu	16405	NR_132762	106633810		NR_132762		SCARNA26A	-	small Cajal body-specific RNA 26A	ncRNA
27676	chr10	33108651	33108750	+	0	NA	intron (NR_160030, intron 1 of 2)	MIRb|SINE|MIR	8107	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
118034	chr19	34225201	34225650	+	0	NA	intron (NM_001384420, intron 9 of 9).2	intron (NM_001384420, intron 9 of 9).2	-29129	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
50688	chr12	48865321	48866230	+	0	NA	promoter-TSS (NM_014470)	promoter-TSS (NM_014470)	95	NM_014470	27289		NM_014470	ENSG00000172602	RND1	ARHS|RHO6|RHOS	Rho family GTPase 1	protein-coding
183776	chr5	81826801	81827000	+	0	NA	Intergenic	Intergenic	-75647	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
166171	chr3	111668891	111669600	+	0	NA	Intergenic	(TGGAAG)n|Simple_repeat|Simple_repeat	-5431	NM_153268	257068		NM_153268	ENSG00000240891	PLCXD2	-	phosphatidylinositol specific phospholipase C X domain containing 2	protein-coding
99196	chr17	49508621	49508880	+	0	NA	intron (NM_002507, intron 3 of 5)	intron (NM_002507, intron 3 of 5)	-2067	NR_106751	102465141		NR_106751	ENSG00000277478	MIR6165	hsa-mir-6165	microRNA 6165	ncRNA
79299	chr16	545751	546100	+	0	NA	intron (NM_005632, intron 3 of 13)	intron (NM_005632, intron 3 of 13)	2648	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
210366	chr7	99591251	99591550	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-6867	NM_001195542	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
184483	chr5	100840371	100841020	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-24130	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
207386	chr7	44144701	44145800	+	0	NA	exon (NM_001354800, exon 10 of 11)	exon (NM_001354800, exon 10 of 11)	894	NM_001354803	2645		NM_000162	ENSG00000106633	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2|PNDM1	glucokinase	protein-coding
195546	chr6	37477601	37478000	+	0	NA	intron (NM_015050, intron 21 of 23)	intron (NM_015050, intron 21 of 23)	22093	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
185085	chr5	119021851	119022200	+	0	NA	intron (NR_134250, intron 1 of 2)	intron (NR_134250, intron 1 of 2)	15636	NR_134249	105379143		NR_134249		DMXL1-DT	-	DMXL1 divergent transcript	ncRNA
23515	chr1	228936201	228936600	+	0	NA	Intergenic	MER50|LTR|ERV1	200921	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
128354	chr2	54945571	54946150	+	0	NA	intron (NM_001039753, intron 27 of 40)	intron (NM_001039753, intron 27 of 40)	64412	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
230131	chr9	127725651	127725950	+	0	NA	intron (NM_144965, intron 9 of 13)	AluSx1|SINE|Alu	9494	NM_001252018	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
133554	chr2	120695771	120696000	+	0	NA	Intergenic	Intergenic	-39983	NM_001374353	2736		NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
226908	chr9	79564971	79565330	+	0	NA	Intergenic	Intergenic	-6623	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
118301	chr19	35436321	35436980	+	0	NA	Intergenic	Intergenic	-11607	NM_005306	2867		NM_005306	ENSG00000126262	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
41254	chr11	65830571	65830730	+	0	NA	Intergenic	L1MA4|LINE|L1	-3313	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
22680	chr1	223834871	223835230	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	10897	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
116772	chr19	18502851	18503150	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	19070	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
7827	chr1	36304921	36305380	+	0	NA	3' UTR (NM_001321473, exon 12 of 12)	3' UTR (NM_001321473, exon 12 of 12)	-1218	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
217817	chr8	36858951	36859280	+	0	NA	intron (NR_134267, intron 18 of 27)	intron (NR_134267, intron 18 of 27)	74741	NM_001031836	157855		NM_001031836	ENSG00000215262	KCNU1	KCNMC1|KCa5|KCa5.1|Kcnma3|SPGF79|Slo3	potassium calcium-activated channel subfamily U member 1	protein-coding
205696	chr7	23276501	23276730	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-22724	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
103961	chr17	79929501	79931000	+	0	NA	Intergenic	CpG	-3525	NR_110850	101928766		NR_110850	ENSG00000262585	LINC01979	-	long intergenic non-protein coding RNA 1979	ncRNA
140008	chr2	230978051	230978750	+	0	NA	Intergenic	L1MC5a|LINE|L1	17632	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
41432	chr11	66066671	66067300	+	0	NA	intron (NM_006842, intron 19 of 21)	L1MEc|LINE|L1	-3287	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
105190	chr17	82297801	82299500	+	0	NA	Intergenic	Intergenic	-5836	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
129995	chr2	74040771	74041130	+	0	NA	intron (NM_001366022, intron 2 of 10)	intron (NM_001366022, intron 2 of 10)	38258	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
226658	chr9	74954251	74955700	+	0	NA	intron (NR_121183, intron 1 of 4)	L1ME3D|LINE|L1	2010	NR_121183	101927380		NR_121183		CARNMT1-AS1	C9orf41-AS1	CARNMT1 antisense RNA 1	ncRNA
42921	chr11	73394521	73394780	+	0	NA	exon (NM_032871, exon 9 of 11)	exon (NM_032871, exon 9 of 11)	17982	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
190426	chr5	179832951	179833050	+	0	NA	intron (NM_003900, intron 5 of 7).2	intron (NM_003900, intron 5 of 7).2	12095	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
229145	chr9	114485971	114486130	+	0	NA	intron (NM_015404, intron 1 of 11)	MIRb|SINE|MIR	17165	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
29192	chr10	68969251	68969550	+	0	NA	intron (NM_004728, intron 7 of 14)	AluSc|SINE|Alu	12960	NM_001256910	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
2438	chr1	9615451	9616330	+	0	NA	Intergenic	Intergenic	26979	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
150288	chr21	41927601	41928180	+	0	NA	intron (NM_015500, intron 2 of 13)	intron (NM_015500, intron 2 of 13)	-1187	NM_199050	25966		NM_015500	ENSG00000157617	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium dependent domain containing 2	protein-coding
206095	chr7	27199321	27199600	+	0	NA	promoter-TSS (NR_037843)	promoter-TSS (NR_037843)	631	NM_000522	3209		NM_000522	ENSG00000106031	HOXA13	HOX1|HOX1J	homeobox A13	protein-coding
97672	chr17	44223971	44224330	+	0	NA	Intergenic	Intergenic	-2846	NR_045058	7343		NM_014233	ENSG00000108312	UBTF	CONDBA|NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor	protein-coding
66108	chr14	59921171	59921330	+	0	NA	intron (NR_075071, intron 1 of 32)	L2c|LINE|L2	1537	NM_001355272	341883		NM_198499	ENSG00000131951	LRRC9	-	leucine rich repeat containing 9	protein-coding
36237	chr11	3714721	3714980	+	0	NA	intron (NR_157590, intron 18 of 31)	L1MB5|LINE|L1	-43466	NM_001303034	57053		NM_020402	ENSG00000129749	CHRNA10	-	cholinergic receptor nicotinic alpha 10 subunit	protein-coding
113682	chr19	10398971	10399400	+	0	NA	intron (NM_007065, intron 1 of 7)	intron (NM_007065, intron 1 of 7)	4353	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
173215	chr4	6893421	6893780	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-15844	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
205940	chr7	25968171	25968840	+	0	NA	Intergenic	Intergenic	-18519	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
47399	chr12	2815221	2815680	+	0	NA	intron (NR_147202, intron 1 of 15)	intron (NR_147202, intron 1 of 15)	-2526	NR_146318	283440		NR_033958	ENSG00000258325	ITFG2-AS1	-	ITFG2 antisense RNA 1	ncRNA
66460	chr14	61552801	61553500	+	0	NA	Intergenic	Intergenic	17044	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
109008	chr18	79708221	79708730	+	0	NA	intron (NM_001318511, intron 5 of 11)	intron (NM_001318511, intron 5 of 11)	27045	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
62066	chr13	94239171	94239400	+	0	NA	intron (NM_005708, intron 4 of 8)	intron (NM_005708, intron 4 of 8)	-51294	NR_046535	100873972		NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
218237	chr8	42054571	42054730	+	0	NA	intron (NR_136589, intron 1 of 1)	LTR104_Mam|LTR|Gypsy	-2663	NM_001305878	7994		NM_006766	ENSG00000083168	KAT6A	ARTHS|MOZ|MRD32|MYST-3|MYST3|RUNXBP2|ZC2HC6A|ZNF220	lysine acetyltransferase 6A	protein-coding
85559	chr16	53445201	53446700	+	0	NA	intron (NM_001323609, intron 3 of 20)	L2c|LINE|L2	10331	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
81551	chr16	9115701	9116380	+	0	NA	intron (NM_014117, intron 3 of 3)	intron (NM_014117, intron 3 of 3)	24396	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
219927	chr8	86470671	86471030	+	0	NA	Intergenic	L1MD2|LINE|L1	37836	NM_016033	51115		NM_016033	ENSG00000176623	RMDN1	CGI-90|FAM82B|RMD-1|RMD1	regulator of microtubule dynamics 1	protein-coding
3573	chr1	16187621	16188280	+	0	NA	Intergenic	Intergenic	24702	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
146515	chr20	49913021	49913480	+	0	NA	intron (NM_006038, intron 1 of 2)	intron (NM_006038, intron 1 of 2)	489	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
103855	chr17	79730651	79731300	+	0	NA	promoter-TSS (NM_178543)	promoter-TSS (NM_178543)	32	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
202639	chr6	158760051	158760680	+	0	NA	intron (NM_001318745, intron 11 of 14)	intron (NM_001318745, intron 11 of 14)	4388	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
132637	chr2	108652551	108653050	+	0	NA	intron (NM_001371500, intron 1 of 2)	intron (NM_001371500, intron 1 of 2)	-2234	NM_001371499	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
46918	chr11	134252621	134254350	+	0	NA	promoter-TSS (NM_001037304)	promoter-TSS (NM_001037304)	-83	NM_014384	27034		NM_014384	ENSG00000151498	ACAD8	ACAD-8|ARC42|IBDH	acyl-CoA dehydrogenase family member 8	protein-coding
66801	chr14	64721121	64721880	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	17076	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
66495	chr14	61691101	61691700	+	0	NA	intron (NR_047116, intron 1 of 1)	L1MC2|LINE|L1	-4113	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
186686	chr5	138660001	138660880	+	0	NA	Intergenic	L2b|LINE|L2	-85039	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
84118	chr16	29670871	29671300	+	0	NA	TTS (NM_001030288)	TTS (NM_001030288)	7838	NM_003123	6693		NM_003123	ENSG00000197471	SPN	CD43|GALGP|GPL115|LEU-22|LSN	sialophorin	protein-coding
65227	chr14	49852021	49853400	+	0	NA	promoter-TSS (NM_004713)	promoter-TSS (NM_004713)	78	NM_004713	9147		NM_004713	ENSG00000165525	NEMF	IDDSAPN|NY-CO-1|RQC2|SDCCAG1	nuclear export mediator factor	protein-coding
104269	chr17	80785421	80785880	+	0	NA	intron (NM_020761, intron 6 of 33)	MER65C|LTR|ERV1	19982	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
75023	chr15	64069321	64070030	+	0	NA	Intergenic	AluJr|SINE|Alu	-23190	NM_001384998	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
234267	chrX	13334651	13334750	+	0	NA	promoter-TSS (NR_045260)	promoter-TSS (NR_045260)	-541	NR_045260	100133123		NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA
78006	chr15	89739951	89740380	+	0	NA	intron (NM_001284395, intron 16 of 16)	MIR|SINE|MIR	11144	NM_018670	55897		NM_018670	ENSG00000166823	MESP1	bHLHc5	mesoderm posterior bHLH transcription factor 1	protein-coding
107216	chr18	36179371	36179930	+	0	NA	TTS (NR_134605)	TTS (NR_134605)	7785	NR_134605	101927809		NR_134605	ENSG00000260552	COSMOC	-	cell fate and sterol metabolism associated divergent transcript of MOCOS	ncRNA
88579	chr16	85568001	85568400	+	0	NA	Intergenic	Intergenic	-43209	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
26372	chr10	16470721	16471050	+	0	NA	intron (NM_030664, intron 2 of 5)	(TATTCTT)n|Simple_repeat|Simple_repeat	33942	NM_001001484	9317		NM_030664	ENSG00000165983	PTER	HPHRP|RPR-1	phosphotriesterase related	protein-coding
18524	chr1	161867151	161867350	+	0	NA	intron (NM_007348, intron 14 of 15)	AluY|SINE|Alu	100930	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
169870	chr3	177317621	177318180	+	0	NA	intron (NR_047465, intron 1 of 1)	L3|LINE|CR1	23458	NR_047465	100820709		NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
91943	chr17	7346871	7347430	+	0	NA	exon (NM_014716, exon 14 of 22)	exon (NM_014716, exon 14 of 22)	-4739	NM_001002914	147040		NM_001002914	ENSG00000213859	KCTD11	C17orf36|KCASH1|REN|REN/KCTD11	potassium channel tetramerization domain containing 11	protein-coding
169345	chr3	160226501	160226780	+	0	NA	TTS (NR_148401)	TTS (NR_148401)	1218	NM_001168214	401097		NM_001168214	ENSG00000180044	C3orf80	-	chromosome 3 open reading frame 80	protein-coding
26901	chr10	26444671	26444930	+	0	NA	intron (NM_019043, intron 2 of 14)	MIR|SINE|MIR	6459	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
193864	chr6	31567171	31567840	+	0	NA	intron (NR_149045, intron 1 of 1)	AluJr4|SINE|Alu	-4594	NM_001159740	4049		NM_000595	ENSG00000226979	LTA	LT|TNFB|TNFSF1|TNLG1E	lymphotoxin alpha	protein-coding
80530	chr16	2766321	2766600	+	0	NA	exon (NM_016333, exon 11 of 15)	exon (NM_016333, exon 11 of 15)	10820	NM_207013	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
232563	chr9	136361171	136361800	+	0	NA	non-coding (NR_073565, exon 3 of 3)	non-coding (NR_073565, exon 3 of 3)	2259	NM_001080849	728489		NM_001080849	ENSG00000213221	DNLZ	C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2	DNL-type zinc finger	protein-coding
221254	chr8	122776151	122776930	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-5115	NM_001362797	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
211201	chr7	102614611	102615530	+	0	NA	intron (NM_001079877, intron 1 of 19)	intron (NM_001079877, intron 1 of 19)	1686	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
83661	chr16	28326701	28327300	+	0	NA	Intergenic	Intergenic	34475	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
69123	chr14	92529501	92530230	+	0	NA	intron (NM_024832, intron 1 of 9)	Tigger17a|DNA|TcMar-Tigger	16084	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
177856	chr4	128156551	128156670	+	0	NA	intron (NR_146772, intron 11 of 19)	intron (NR_146772, intron 11 of 19)	95298	NM_032239	55132		NM_018078	ENSG00000138709	LARP1B	LARP2	La ribonucleoprotein 1B	protein-coding
84811	chr16	31076451	31076550	+	0	NA	exon (NM_014699, exon 2 of 3)	exon (NM_014699, exon 2 of 3)	2078	NM_014699	9726		NM_014699	ENSG00000167395	ZNF646	-	zinc finger protein 646	protein-coding
200635	chr6	136920921	136921580	+	0	NA	Intergenic	CpG	-1051	NM_001008783	340146		NM_001008783	ENSG00000182747	SLC35D3	FRCL1	solute carrier family 35 member D3	protein-coding
44447	chr11	104878301	104878500	+	0	NA	Intergenic	LTR102_Mam|LTR|ERVL	20270	NR_034065	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
98740	chr17	48039121	48039580	+	0	NA	Intergenic	AluJo|SINE|Alu	-1553	NM_016429	51226		NM_016429	ENSG00000005243	COPZ2	zeta2-COP	COPI coat complex subunit zeta 2	protein-coding
58863	chr12	133135551	133135850	+	0	NA	intron (NM_015394, intron 1 of 4)	intron (NM_015394, intron 1 of 4)	5073	NM_015394	7556		NM_015394	ENSG00000256223	ZNF10	KOX1	zinc finger protein 10	protein-coding
8959	chr1	44408251	44408350	+	0	NA	intron (NM_001376488, intron 1 of 14)	CpG-1030	1508	NM_001376488	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
6672	chr1	29133951	29134750	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-10447	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
108497	chr18	73975351	73975450	+	0	NA	Intergenic	L1MC4|LINE|L1	172434	NM_152676	201456		NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
238499	chrX	153614771	153615180	+	0	NA	Intergenic	Intergenic	15635	NR_131982	105373383		NR_131982	ENSG00000293160	LOC105373383	-	uncharacterized LOC105373383	ncRNA
96376	chr17	40105901	40106330	+	0	NA	Intergenic	Intergenic	-5526	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
171473	chr3	196469901	196470300	+	0	NA	3' UTR (NM_152617, exon 6 of 6)	3' UTR (NM_152617, exon 6 of 6)	33668	NM_152617	165918		NM_152617	ENSG00000163961	RNF168	RIDL|hRNF168	ring finger protein 168	protein-coding
24303	chr1	236683921	236684180	+	0	NA	Intergenic	Intergenic	-2404	NM_001278344								
30518	chr10	79346371	79347800	+	0	NA	promoter-TSS (NM_005729)	promoter-TSS (NM_005729)	-384	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
69788	chr14	99186121	99186600	+	0	NA	intron (NM_022898, intron 2 of 2)	AluSx1|SINE|Alu	85837	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
121057	chr19	45861301	45861700	+	0	NA	intron (NM_004819, intron 1 of 26)	AluSg|SINE|Alu	1647	NM_004819	8189		NM_004819	ENSG00000125755	SYMPK	Pta1|SPK|SYM	symplekin scaffold protein	protein-coding
7525	chr1	34781321	34781850	+	0	NA	promoter-TSS (NM_001005752)	promoter-TSS (NM_001005752)	371	NM_024009	2707		NM_024009	ENSG00000188910	GJB3	CX31|DFNA2|DFNA2B|EKV|EKVP1	gap junction protein beta 3	protein-coding
108836	chr18	79072701	79072900	+	0	NA	intron (NM_198531, intron 1 of 29)	SVA_B|Retroposon|SVA	3406	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
97225	chr17	42798171	42799180	+	0	NA	promoter-TSS (NM_001330222)	promoter-TSS (NM_001330222)	29	NM_001040431	28958		NM_014019	ENSG00000183978	COA3	CCDC56|COX25|HSPC009|MC4DN14|MITRAC12|hCOA3	cytochrome c oxidase assembly factor 3	protein-coding
127441	chr2	42178501	42179130	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-8584	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226371	chr9	70258221	70260830	+	0	NA	promoter-TSS (NR_039990)	promoter-TSS (NR_039990)	547	NM_015110	23137		NM_015110	ENSG00000198887	SMC5	ATELS2|SMC5L1	structural maintenance of chromosomes 5	protein-coding
118978	chr19	38874221	38875280	+	0	NA	intron (NM_001195833, intron 3 of 11)	intron (NM_001195833, intron 3 of 11)	3525	NM_198445	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
63442	chr13	114110411	114112300	+	0	NA	intron (NM_001320821, intron 1 of 25).2	CpG	21268	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
111337	chr19	3644551	3645280	+	0	NA	intron (NM_001300849, intron 11 of 16)	intron (NM_001300849, intron 11 of 16)	-18100	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
179448	chr4	184416901	184417600	+	0	NA	intron (NM_002199, intron 5 of 8)	L1MC5a|LINE|L1	-34944	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
11887	chr1	93169651	93170130	+	0	NA	intron (NR_030761, intron 1 of 4)	(AC)n|Simple_repeat|Simple_repeat	10523	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
122512	chr19	49595701	49596700	+	0	NA	exon (NM_020719, exon 4 of 14)	exon (NM_020719, exon 4 of 14)	5018	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
214950	chr7	151793551	151794050	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-12538	NM_001354885	644090		NM_001354885	ENSG00000242048	PRKAG2-AS2	-	PRKAG2 antisense RNA 2	ncRNA
108511	chr18	74202951	74203250	+	0	NA	Intergenic	Intergenic	54577	NM_014177	29090		NM_014177	ENSG00000075336	TIMM21	C18orf55|HSPC154|TIM21	translocase of inner mitochondrial membrane 21	protein-coding
210398	chr7	99949621	99949880	+	0	NA	Intergenic	Intergenic	-20130	NM_181538	349149		NM_181538	ENSG00000176402	GJC3	CX29|CX30.2|CX31.3|GJE1	gap junction protein gamma 3	protein-coding
218010	chr8	38442401	38442750	+	0	NA	intron (NM_001174064, intron 2 of 18)	intron (NM_001174064, intron 2 of 18)	25149	NM_001174066	2260		NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
99358	chr17	49901671	49902600	+	0	NA	Intergenic	CpG	-54118	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
34130	chr10	128026971	128027150	+	0	NA	intron (NM_001323354, intron 1 of 19)	intron (NM_001323354, intron 1 of 19)	-20552	NM_130435	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
134064	chr2	131500871	131501030	+	0	NA	intron (NR_026922, intron 5 of 17)	intron (NR_026922, intron 5 of 17)	8137	NR_026922	150776		NR_026922	ENSG00000293311	SMPD4BP	-	sphingomyelin phosphodiesterase 4B, pseudogene	pseudo
124987	chr2	9336201	9336400	+	0	NA	intron (NM_001135191, intron 9 of 26)	(TCCC)n|Simple_repeat|Simple_repeat	86291	NR_134951	9270		NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin subunit beta 1 binding protein 1	protein-coding
16059	chr1	153259021	153259280	+	0	NA	promoter-TSS (NM_000427)	promoter-TSS (NM_000427)	-537	NM_000427	4014		NM_000427	ENSG00000203782	LORICRIN	LOR	loricrin cornified envelope precursor protein	protein-coding
153576	chr22	26669701	26669900	+	0	NA	non-coding (NR_003491, exon 5 of 5)	non-coding (NR_003491, exon 5 of 5)	-3043	NR_110543	102724827		NR_110543		MIATNB	-	MIAT neighbor	ncRNA
38694	chr11	46593301	46594900	+	0	NA	promoter-TSS (NM_001300731)	promoter-TSS (NM_001300731)	-77	NM_001300731	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
228702	chr9	109001051	109001550	+	0	NA	intron (NM_001286974, intron 1 of 18)	L2|LINE|L2	12199	NM_001286974	8727		NM_003798	ENSG00000119326	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin alpha like 1	protein-coding
202701	chr6	158812821	158813430	+	0	NA	intron (NM_003379, intron 1 of 12)	L2b|LINE|L2	-4854	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
55018	chr12	96377321	96378580	+	0	NA	intron (NM_002595, intron 1 of 16)	AluY|SINE|Alu	22489	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
205668	chr7	23001571	23001730	+	0	NA	intron (NM_001363466, intron 1 of 11)	intron (NM_001363466, intron 1 of 11)	12480	NM_032581	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
76757	chr15	76904661	76905980	+	0	NA	promoter-TSS (NM_001353012)	promoter-TSS (NM_001353012)	20	NM_001353009	49855		NM_020843	ENSG00000140386	SCAPER	IDDRP|MSTP063|ZNF291|Zfp291	S-phase cyclin A associated protein in the ER	protein-coding
114106	chr19	11129401	11129800	+	0	NA	exon (NM_001195798, exon 17 of 18)	exon (NM_001195798, exon 17 of 18)	16126	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
101581	chr17	68068951	68069580	+	0	NA	Intergenic	AluJb|SINE|Alu	-32290	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
90281	chr17	1006951	1007250	+	0	NA	intron (NM_001282149, intron 17 of 17).3	CpG	9971	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
211080	chr7	102482001	102482580	+	0	NA	3' UTR (NM_001277335, exon 20 of 20)	3' UTR (NM_001277335, exon 20 of 20)	-3368	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
214600	chr7	150676671	150677650	+	0	NA	Intergenic	Intergenic	-8546	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
119242	chr19	39479471	39479630	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-1288	NM_001329559	92609		NM_001001563	ENSG00000105197	TIMM50	MGCA9|TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
19933	chr1	184557821	184558080	+	0	NA	intron (NM_030806, intron 3 of 5)	intron (NM_030806, intron 3 of 5)	170921	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
30382	chr10	78041971	78042130	+	0	NA	intron (NM_001142285, intron 4 of 4)	intron (NM_001142285, intron 4 of 4)	8187	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
127712	chr2	43293801	43294280	+	0	NA	intron (NR_144316, intron 30 of 36)	L3|LINE|CR1	66829	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
66286	chr14	61384851	61386200	+	0	NA	intron (NM_006255, intron 1 of 13)	L3|LINE|CR1	64082	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
226877	chr9	78208751	78209300	+	0	NA	Intergenic	Intergenic	-27050	NM_001098802	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
83879	chr16	28938401	28938600	+	0	NA	intron (NR_169755, intron 11 of 13)	intron (NR_169755, intron 11 of 13)	6529	NR_169755	930		NM_001770	ENSG00000177455	CD19	B4|CVID3	CD19 molecule	protein-coding
43007	chr11	73978651	73979050	+	0	NA	intron (NM_001381950, intron 2 of 6)	intron (NM_001381950, intron 2 of 6)	3993	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
111831	chr19	4525121	4525750	+	0	NA	intron (NM_001013706, intron 6 of 7)	L2b|LINE|L2	-6949	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
13824	chr1	117622321	117623300	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	16762	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
223819	chr8	144850021	144850280	+	0	NA	TTS (NM_014066)	TTS (NM_014066)	2898	NM_001081004	28991		NM_014066	ENSG00000170619	COMMD5	HCARG|HT002	COMM domain containing 5	protein-coding
110613	chr19	2195701	2196300	+	0	NA	intron (NM_032482, intron 7 of 27)	intron (NM_032482, intron 7 of 27)	32067	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
40112	chr11	62814251	62815850	+	0	NA	intron (NM_001244666, intron 10 of 10)	AluSc|SINE|Alu	-9610	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
153988	chr22	30388501	30389150	+	0	NA	Intergenic	Intergenic	-1414	NM_001017981	200312		NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
150693	chr21	43702121	43702380	+	0	NA	Intergenic	Intergenic	-16879	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
15388	chr1	150168921	150169200	+	0	NA	intron (NR_135098, intron 2 of 3)	ERV3-16A3_I-int|LTR|ERVL	8332	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
67483	chr14	70915771	70916180	+	0	NA	intron (NM_014982, intron 1 of 35)	L2|LINE|L2	8516	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
159260	chr3	12946921	12948030	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	20255	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
47029	chr12	391351	391450	+	0	NA	intron (NM_001130148, intron 1 of 10)	AluSq|SINE|Alu	2050	NM_001130147	84318		NM_032358	ENSG00000120647	CCDC77	-	coiled-coil domain containing 77	protein-coding
111516	chr19	4005051	4005350	+	0	NA	Intergenic	AluY|SINE|Alu	-2536	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
151596	chr22	11211421	11211880	+	0	NA	Intergenic	SAR|Satellite|Satellite	-250121	NR_132320	102723780		NR_132320		FRG1FP	-	FSHD region gene 1 family member F, pseudogene	pseudo
21264	chr1	204390871	204391330	+	0	NA	Intergenic	Intergenic	20717	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
7577	chr1	35174751	35175430	+	0	NA	Intergenic	Intergenic	18055	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
218169	chr8	41960001	41960300	+	0	NA	intron (NM_001305878, intron 8 of 13)	L1MB3|LINE|L1	-63409	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
109464	chr19	796601	798400	+	0	NA	promoter-TSS (NM_002819)	promoter-TSS (NM_002819)	48	NM_031990	5725		NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
170915	chr3	194136901	194137110	+	0	NA	exon (NM_005524, exon 3 of 4)	exon (NM_005524, exon 3 of 4)	857	NM_005524	3280		NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
189030	chr5	169636751	169637500	+	0	NA	promoter-TSS (NM_004946)	promoter-TSS (NM_004946)	-150	NM_004946	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
164628	chr3	66397601	66397800	+	0	NA	intron (NM_001377344, intron 10 of 17)	intron (NM_001377344, intron 10 of 17)	8067	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
60902	chr13	46164571	46164730	+	0	NA	intron (NM_002298, intron 1 of 15)	intron (NM_002298, intron 1 of 15)	17527	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
156339	chr22	40731201	40732080	+	0	NA	Intergenic	Intergenic	52156	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
76277	chr15	74099651	74100530	+	0	NA	non-coding (NR_160652, exon 1 of 5)	non-coding (NR_160652, exon 1 of 5)	116	NR_160652	732265		NR_160652		COMMD4P2	-	COMM domain containing 4 pseudogene 2	pseudo
139872	chr2	230656471	230657080	+	0	NA	Intergenic	Intergenic	43754	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
237664	chrX	124300021	124300780	+	0	NA	Intergenic	L1MB5|LINE|L1	-32260	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
66073	chr14	58637221	58638450	+	0	NA	promoter-TSS (NM_001079520)	promoter-TSS (NM_001079520)	-127	NM_001079520	51339		NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding
149261	chr21	26068051	26068380	+	0	NA	intron (NM_001385253, intron 3 of 16)	intron (NM_001385253, intron 3 of 16)	72175	NM_001136016	351		NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|alpha-sAPP|preA4	amyloid beta precursor protein	protein-coding
207501	chr7	44755071	44756280	+	0	NA	promoter-TSS (NM_174929)	promoter-TSS (NM_174929)	-513	NM_174929	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
53563	chr12	67630151	67631330	+	0	NA	Intergenic	Intergenic	-18005	NM_006482	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
117000	chr19	18899771	18901030	+	0	NA	exon (NM_001330469, exon 9 of 11)	exon (NM_001330469, exon 9 of 11)	-3673	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
15512	chr1	150484871	150485600	+	0	NA	Intergenic	Intergenic	-2184	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
60371	chr13	40931471	40932030	+	0	NA	TTS (NM_001145353)	TTS (NM_001145353)	-9976	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
181768	chr5	50737951	50738250	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	70686	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
173493	chr4	9364151	9365350	+	0	NA	TTS (NM_001242330).5	TTS (NM_001242330).5	1621	NM_001242329	728386		NM_001242329	ENSG00000227140	USP17L5	-	ubiquitin specific peptidase 17 like family member 5	protein-coding
94314	chr17	28754451	28755530	+	0	NA	TTS (NM_001288634)	TTS (NM_001288634)	10979	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
118586	chr19	36331351	36331990	+	0	NA	promoter-TSS (NR_038279)	promoter-TSS (NR_038279)	48	NR_038278	100506930		NR_038278	ENSG00000232677	LINC00665	CIP2A-BP	long intergenic non-protein coding RNA 665	ncRNA
129482	chr2	69600421	69601400	+	0	NA	intron (NM_001371577, intron 2 of 14)	Tigger1|DNA|TcMar-Tigger	42828	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
39942	chr11	62548901	62549100	+	0	NA	Intergenic	Intergenic	-2194	NM_001620	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
51334	chr12	51368751	51370200	+	0	NA	intron (NM_007210, intron 4 of 11)	intron (NM_007210, intron 4 of 11)	-21842	NM_001267615	9498		NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding
140464	chr2	233171001	233171300	+	0	NA	exon (NM_005541, exon 17 of 27).2	exon (NM_005541, exon 17 of 27).2	-80421	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
150794	chr21	43890021	43890280	+	0	NA	intron (NM_001369878, intron 1 of 8)	MSTA|LTR|ERVL-MaLR	24927	NM_001369878	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
48105	chr12	7645471	7645850	+	0	NA	Intergenic	Intergenic	20248	NM_001644	339		NM_001644	ENSG00000111701	APOBEC1	APO1|APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme catalytic subunit 1	protein-coding
110714	chr19	2309821	2310450	+	0	NA	Intergenic	MIRb|SINE|MIR	-1981	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
3823	chr1	16873001	16873700	+	0	NA	intron (NR_160657, intron 1 of 1)	CpG	1124	NR_160657	112267871		NR_160657	ENSG00000228549	LINC03126	-	long intergenic non-protein coding RNA 3126	ncRNA
208206	chr7	65080671	65082050	+	0	NA	Intergenic	CpG	10822	NR_145713	109617022		NR_145713	ENSG00000206785	SNORA15B-2	SNORA15C	small nucleolar RNA, H/ACA box 15B-2	snoRNA
89154	chr16	88527001	88528280	+	0	NA	intron (NM_153813, intron 5 of 9)	intron (NM_153813, intron 5 of 9)	3413	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
200552	chr6	136268751	136269330	+	0	NA	intron (NM_001301038, intron 9 of 12)	intron (NM_001301038, intron 9 of 12)	-18729	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
64002	chr14	22491851	22492350	+	0	NA	Intergenic	Intergenic	-9141	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
100261	chr17	59521471	59521850	+	0	NA	intron (NR_110813, intron 1 of 2)	intron (NR_110813, intron 1 of 2)	5197	NR_110813	101927728		NR_110813		LINC01476	-	long intergenic non-protein coding RNA 1476	ncRNA
195579	chr6	37514071	37515200	+	0	NA	intron (NR_126057, intron 1 of 3)	MIR|SINE|MIR	7287	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
106489	chr18	14606551	14606880	+	0	NA	Intergenic	L1MEf|LINE|L1	-63115	NR_134878	388468		NM_001137671	ENSG00000183206	POTEC	A26B2|CT104.6|POTE-18|POTE18	POTE ankyrin domain family member C	protein-coding
117281	chr19	19475871	19476680	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	39273	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
236487	chrX	71662521	71663730	+	0	NA	non-coding (NR_136576, exon 6 of 6)	non-coding (NR_136576, exon 6 of 6)	3743	NR_136576	100129291		NR_136576	ENSG00000237265	LOC100129291	-	chromosome X open reading frame 49 pseudogene	pseudo
49631	chr12	28195771	28195930	+	0	NA	intron (NM_001352087, intron 1 of 10)	AluJb|SINE|Alu	-5112	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
237763	chrX	129754771	129755200	+	0	NA	intron (NM_003399, intron 12 of 20)	intron (NM_003399, intron 12 of 20)	16006	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
183749	chr5	81393751	81394280	+	0	NA	exon (NM_130767, exon 1 of 15)	exon (NM_130767, exon 1 of 15)	119	NM_130767	134526		NM_130767	ENSG00000172497	ACOT12	CACH-1|Cach|STARD15|THEAL	acyl-CoA thioesterase 12	protein-coding
3480	chr1	15977051	15977650	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-1218	NM_001324138	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
48498	chr12	9853201	9853600	+	0	NA	exon (NM_005127, exon 5 of 5)	exon (NM_005127, exon 5 of 5)	16459	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
68915	chr14	91361901	91362100	+	0	NA	intron (NM_001080414, intron 3 of 29)	AluSx|SINE|Alu	55820	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
95240	chr17	35368021	35369150	+	0	NA	intron (NM_001376008, intron 1 of 6)	L1MA1|LINE|L1	5036	NM_001376010	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
169521	chr3	170063401	170063600	+	0	NA	intron (NM_014373, intron 2 of 3)	AluSz|SINE|Alu	25505	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
6740	chr1	30714451	30714750	+	0	NA	intron (NM_002379, intron 6 of 7)	intron (NM_002379, intron 6 of 7)	-4172	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
90806	chr17	2240121	2240580	+	0	NA	intron (NM_001256827, intron 2 of 11)	intron (NM_001256827, intron 2 of 11)	-3503	NM_001256828	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
92363	chr17	8199801	8201000	+	0	NA	Intergenic	MER50C|LTR|ERV1	9825	NR_132731	9212		NM_004217	ENSG00000178999	AURKB	AIK2|AIM-1|AIM1|ARK-2|ARK2|AurB|IPL1|PPP1R48|STK-1|STK12|STK5|aurkb-sv1|aurkb-sv2	aurora kinase B	protein-coding
175629	chr4	76200851	76201150	+	0	NA	intron (NM_001204255, intron 1 of 8)	intron (NM_001204255, intron 1 of 8)	12824	NM_001204255	950		NM_005506	ENSG00000138760	SCARB2	AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII	scavenger receptor class B member 2	protein-coding
210730	chr7	100624951	100625250	+	0	NA	intron (NM_003227, intron 17 of 17)	AluSp|SINE|Alu	8550	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
158672	chr3	5127571	5128050	+	0	NA	intron (NM_018184, intron 1 of 6)	AluY|SINE|Alu	5518	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
134408	chr2	141865351	141865490	+	0	NA	intron (NM_018557, intron 1 of 90)	AluYa5|SINE|Alu	265596	NM_018557	53353		NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding
74170	chr15	55317251	55317700	+	0	NA	3' UTR (NM_001308423, exon 2 of 2)	3' UTR (NM_001308423, exon 2 of 2)	1648	NM_001308423	101928527		NM_001308421	ENSG00000225973	PIGBOS1	HP06981	PIGB opposite strand 1	protein-coding
138085	chr2	202172751	202173130	+	0	NA	intron (NM_001367720, intron 15 of 23)	intron (NM_001367720, intron 15 of 23)	-55882	NR_135243	729224		NR_135243	ENSG00000222035	KIAA2012-AS1	-	KIAA2012 antisense RNA 1	ncRNA
28815	chr10	62243301	62244100	+	0	NA	intron (NM_001282941, intron 3 of 4)	intron (NM_001282941, intron 3 of 4)	25144	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
153549	chr22	26594851	26594950	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	-4768	NM_001362922	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
189217	chr5	171445671	171446030	+	0	NA	intron (NM_003862, intron 3 of 4)	intron (NM_003862, intron 3 of 4)	26203	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
212860	chr7	130854901	130855100	+	0	NA	Intergenic	Intergenic	21810	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
47197	chr12	813901	814700	+	0	NA	intron (NM_018979, intron 2 of 27)	AluSx|SINE|Alu	61377	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
12623	chr1	109110751	109111150	+	0	NA	intron (NM_001366200, intron 1 of 4)	L2c|LINE|L2	1797	NR_158763	127003		NM_001122961	ENSG00000179902	CFAP276	C10orf194|C1orf194	cilia and flagella associated protein 276	protein-coding
131015	chr2	88001751	88002300	+	0	NA	Intergenic	LTR41|LTR|ERVL	-16235	NM_001024457	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
68727	chr14	90820701	90821700	+	0	NA	Intergenic	Intergenic	-4770	NM_001010854	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
2904	chr1	11676351	11676650	+	0	NA	intron (NM_006341, intron 5 of 8)	MIR3|SINE|MIR	4648	NM_006341	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
23134	chr1	226702851	226703880	+	0	NA	intron (NM_002221, intron 2 of 7)	CpG	-28297	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
86012	chr16	57479321	57479650	+	0	NA	exon (NM_018110, exon 2 of 9)	exon (NM_018110, exon 2 of 9)	272	NM_001369621	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
180594	chr5	15103201	15103400	+	0	NA	Intergenic	Intergenic	163260	NR_109944	101929454		NR_109944		LINC02149	-	long intergenic non-protein coding RNA 2149	ncRNA
34721	chr10	133622501	133623100	+	0	NA	Intergenic	CpG	3995	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
20802	chr1	201170201	201172030	+	0	NA	intron (NM_001288564, intron 1 of 5)	CpG	467	NM_001288564	252839		NM_016456	ENSG00000116857	TMEM9	DERM4|TMEM9A	transmembrane protein 9	protein-coding
204705	chr7	5527701	5529000	+	0	NA	exon (NM_001101, exon 4 of 6)	exon (NM_001101, exon 4 of 6)	2251	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
41774	chr11	66840971	66841130	+	0	NA	intron (NM_024650, intron 15 of 16)	intron (NM_024650, intron 15 of 16)	-2391	NM_005133	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
199455	chr6	117613901	117614580	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-11729	NM_020399	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
75393	chr15	65755601	65755800	+	0	NA	intron (NM_001376919, intron 3 of 31)	AluJr|SINE|Alu	-36368	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
118807	chr19	38506021	38506300	+	0	NA	intron (NM_000540, intron 54 of 105)	intron (NM_000540, intron 54 of 105)	72469	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
214422	chr7	149840471	149840880	+	0	NA	intron (NM_001099220, intron 1 of 7)	Tigger3b|DNA|TcMar-Tigger	2300	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
143826	chr20	32489571	32489930	+	0	NA	intron (NM_001256798, intron 4 of 10)	AluYc|SINE|Alu	-6260	NM_001351680	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
165244	chr3	73031471	73031630	+	0	NA	intron (NM_001318025, intron 2 of 7)	AluSq2|SINE|Alu	-30109	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
101306	chr17	66470221	66470680	+	0	NA	intron (NM_002737, intron 2 of 16)	AluSq|SINE|Alu	-53596	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
73459	chr15	43482951	43484000	+	0	NA	intron (NM_001355001, intron 4 of 28)	L1ME4a|LINE|L1	9681	NM_001141980	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
41615	chr11	66418401	66419230	+	0	NA	Intergenic	Intergenic	-2189	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
32593	chr10	103503201	103503400	+	0	NA	intron (NR_120675, intron 2 of 3)	intron (NR_120675, intron 2 of 3)	9595	NM_004210	9148		NM_004210	ENSG00000107954	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding
151568	chr21	46594951	46595050	+	0	NA	Intergenic	Intergenic	10082	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
172919	chr4	3501401	3501880	+	0	NA	TTS (NM_001363811)	TTS (NM_001363811)	17096	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
144973	chr20	37243871	37244050	+	0	NA	Intergenic	L2b|LINE|L2	17854	NM_021081	2691		NM_021081	ENSG00000118702	GHRH	GHRF|GRF|INN	growth hormone releasing hormone	protein-coding
167936	chr3	136187301	136187600	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSx1|SINE|Alu	7018	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
194362	chr6	32965601	32965800	+	0	NA	Intergenic	L2c|LINE|L2	-2894	NM_005104	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
72245	chr15	30473151	30473600	+	0	NA	promoter-TSS (NR_036650)	promoter-TSS (NR_036650)	-608	NR_036650	100288615		NR_036650		WHAMMP1	WHDC1P1	WHAMM pseudogene 1	pseudo
217311	chr8	27403721	27403980	+	0	NA	intron (NM_173174, intron 7 of 35)	(TCT)n|Simple_repeat|Simple_repeat	-29520	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
156033	chr22	39958801	39959000	+	0	NA	intron (NM_004810, intron 3 of 7)	intron (NM_004810, intron 3 of 7)	12083	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
145186	chr20	38879071	38879430	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-47167	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
234139	chrX	10070901	10071180	+	0	NA	intron (NM_015691, intron 3 of 22)	intron (NM_015691, intron 3 of 22)	55786	NM_015691	55841		NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
104137	chr17	80378901	80379100	+	0	NA	intron (NM_001256071, intron 54 of 67)	AluJb|SINE|Alu	-36167	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
51653	chr12	53043421	53043880	+	0	NA	non-coding (NR_033854, exon 4 of 4)	non-coding (NR_033854, exon 4 of 4)	-3341	NM_198316	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
7875	chr1	36399171	36399800	+	0	NA	Intergenic	AluJr|SINE|Alu	-1577	NM_032881	84967		NM_032881	ENSG00000181817	LSM10	MST074|MSTP074	LSM10, U7 small nuclear RNA associated	protein-coding
186263	chr5	134529121	134529500	+	0	NA	intron (NM_015288, intron 1 of 10)	intron (NM_015288, intron 1 of 10)	3202	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
181796	chr5	50964151	50964550	+	0	NA	Intergenic	Intergenic	5837	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
34883	chr11	371001	371500	+	0	NA	intron (NM_178537, intron 1 of 19)	intron (NM_178537, intron 1 of 19)	1751	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
223602	chr8	144307501	144307700	+	0	NA	intron (NM_005526, intron 1 of 12)	AluSx1|SINE|Alu	9715	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
125372	chr2	11151471	11151630	+	0	NA	TTS (NM_182500)	TTS (NM_182500)	-3822	NM_001282710	130814		NM_152391	ENSG00000162976	SLC66A3	C2orf22|PQLC3	solute carrier family 66 member 3	protein-coding
55634	chr12	107090301	107091150	+	0	NA	intron (NM_004075, intron 1 of 12)	L2a|LINE|L2	2824	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
63940	chr14	22068621	22068880	+	0	NA	Intergenic	Intergenic	364003	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
205647	chr7	22782621	22782880	+	0	NA	Intergenic	Intergenic	40099	NR_168015	54543		NM_019059	ENSG00000196683	TOMM7	GMPGS|TOM7	translocase of outer mitochondrial membrane 7	protein-coding
135649	chr2	168348151	168348350	+	0	NA	Intergenic	L1MEd|LINE|L1	-100655	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
177669	chr4	121706501	121707530	+	0	NA	Intergenic	MER31A|LTR|ERV1	-10035	NM_001154	308		NM_001154	ENSG00000164111	ANXA5	ANX5|CPB-I|ENX2|HEL-S-7|PP4|RPRGL3|VAC-alph	annexin A5	protein-coding
198863	chr6	109438601	109438800	+	0	NA	intron (NM_001111298, intron 1 of 8)	AluSq|SINE|Alu	1928	NM_173672	285755		NM_173672	ENSG00000185250	PPIL6	PPIase|RSPH12|bA425D10.6|dJ919F19.1	peptidylprolyl isomerase like 6	protein-coding
83167	chr16	23466901	23467580	+	0	NA	3' UTR (NM_015044, exon 17 of 17)	3' UTR (NM_015044, exon 17 of 17)	-14051	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
222364	chr8	133570401	133573480	+	0	NA	promoter-TSS (NM_003033)	promoter-TSS (NM_003033)	-53	NM_173344	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
174616	chr4	40295201	40295900	+	0	NA	Intergenic	Intergenic	-11635	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
195597	chr6	37560051	37560650	+	0	NA	Intergenic	Intergenic	-4928	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
223952	chr9	1045651	1045950	+	0	NA	Intergenic	CpG	-2343	NR_110643	102800446		NR_110643		LINC01230	TCONS_00015639|linc-DMRT2|lnc-DRMT2	long intergenic non-protein coding RNA 1230	ncRNA
84242	chr16	30000271	30000630	+	0	NA	intron (NR_130786, intron 3 of 7)	AluJr|SINE|Alu	4209	NR_130787	283899		NM_173618	ENSG00000169592	INO80E	CCDC95	INO80 complex subunit E	protein-coding
219620	chr8	80120721	80121280	+	0	NA	intron (NR_105035, intron 1 of 6)	AluSx|SINE|Alu	-40169	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
179467	chr4	184463001	184463200	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	11450	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
96866	chr17	42049951	42051000	+	0	NA	intron (NM_001358661, intron 1 of 2)	CpG	126	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
119126	chr19	39363771	39364330	+	0	NA	intron (NM_001384588, intron 4 of 13)	intron (NM_001384588, intron 4 of 13)	21629	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
27132	chr10	28248301	28248700	+	0	NA	intron (NM_001318170, intron 1 of 16)	intron (NM_001318170, intron 1 of 16)	33623	NM_173496	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
177580	chr4	119628221	119629300	+	0	NA	promoter-TSS (NM_033437)	promoter-TSS (NM_033437)	44	NM_001083	8654		NM_001083	ENSG00000138735	PDE5A	CGB-PDE|CN5A|PDE5	phosphodiesterase 5A	protein-coding
92001	chr17	7446621	7447300	+	0	NA	intron (NM_000747, intron 4 of 10)	intron (NM_000747, intron 4 of 10)	1899	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
40951	chr11	65331051	65331800	+	0	NA	Intergenic	AluJb|SINE|Alu	-2427	NM_006268	5977		NM_006268	ENSG00000133884	DPF2	CSS7|REQ|SMARCG2|UBID4|ubi-d4	double PHD fingers 2	protein-coding
49339	chr12	22066351	22066450	+	0	NA	TTS (NM_018686)	TTS (NM_018686)	20182	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
132930	chr2	111436751	111438030	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	57771	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
178006	chr4	139304921	139305450	+	0	NA	intron (NM_057175, intron 1 of 19)	L1MD2|LINE|L1	-2634	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
195411	chr6	36849021	36849280	+	0	NA	Intergenic	Intergenic	-9152	NM_001376889	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
32469	chr10	102652121	102653180	+	0	NA	intron (NM_001345950, intron 1 of 4)	L2c|LINE|L2	8155	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
88065	chr16	81466551	81466850	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	21530	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
11688	chr1	91845401	91845600	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	40651	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
58425	chr12	131924571	131925930	+	0	NA	Intergenic	AluY|SINE|Alu	-4026	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
202382	chr6	157825171	157825330	+	0	NA	intron (NM_016224, intron 1 of 17)	AluSx|SINE|Alu	2004	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
226899	chr9	78439401	78439700	+	0	NA	Intergenic	Intergenic	142425	NM_058179	29968		NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding
233581	chrX	308701	309200	+	0	NA	intron (NM_012227, intron 7 of 9)	AluYc|SINE|Alu	9869	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
228381	chr9	99115471	99115830	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	10537	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
116988	chr19	18889801	18890000	+	0	NA	intron (NM_021267, intron 2 of 7)	L2a|LINE|L2	6258	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
77988	chr15	89430521	89431050	+	0	NA	Intergenic	L2c|LINE|L2	30614	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
58373	chr12	131776001	131776650	+	0	NA	intron (NM_001261411, intron 13 of 18)	intron (NM_001261411, intron 13 of 18)	-52068	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
42174	chr11	67878671	67878830	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-73414	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
64194	chr14	23011701	23011900	+	0	NA	Intergenic	AluY|SINE|Alu	-1657	NM_001282968	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
68630	chr14	89720201	89722180	+	0	NA	Intergenic	Intergenic	-102025	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
26862	chr10	24901021	24901400	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	51396	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
221311	chr8	123032921	123033180	+	0	NA	intron (NM_024295, intron 1 of 7)	AluJr4|SINE|Alu	-7278	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
209892	chr7	91940271	91941650	+	0	NA	promoter-TSS (NM_005751)	promoter-TSS (NM_005751)	98	NM_005751	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
97136	chr17	42551021	42551280	+	0	NA	Intergenic	L2|LINE|L2	-1773	NR_144397	3292		NM_000413	ENSG00000108786	HSD17B1	17-beta-HSD|20-alpha-HSD|E2DH|EDH17B2|EDHB17|HSD17|SDR28C1	hydroxysteroid 17-beta dehydrogenase 1	protein-coding
88090	chr16	81514121	81514600	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	19006	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
113339	chr19	8614351	8614830	+	0	NA	Intergenic	Intergenic	-3875	NM_030957	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
60679	chr13	43367801	43368480	+	0	NA	intron (NM_001347970, intron 4 of 15)	intron (NM_001347970, intron 4 of 15)	-80712	NR_120399	100874130		NR_120399		ENOX1-AS2	-	ENOX1 antisense RNA 2	ncRNA
44051	chr11	95217101	95217500	+	0	NA	intron (NM_001271594, intron 1 of 8)	intron (NM_001271594, intron 1 of 8)	-12886	NR_110295	100129203		NR_110295	ENSG00000245552	LOC100129203	-	uncharacterized LOC100129203	ncRNA
162505	chr3	48581351	48581650	+	0	NA	intron (NM_000094, intron 50 of 118)	intron (NM_000094, intron 50 of 118)	-2523	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
176413	chr4	89158821	89159250	+	0	NA	Intergenic	Intergenic	47502	NM_145715	166815		NM_145715	ENSG00000180346	TIGD2	HEL106	tigger transposable element derived 2	protein-coding
123059	chr19	51343971	51344130	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-1926	NM_001163922	147645		NM_001163922	ENSG00000186806	VSIG10L	-	V-set and immunoglobulin domain containing 10 like	protein-coding
234248	chrX	13092301	13093030	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-48045	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
77239	chr15	81296301	81297250	+	0	NA	promoter-TSS (NM_004513)	promoter-TSS (NM_004513)	-195	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
164386	chr3	58307601	58308730	+	0	NA	intron (NM_001348712, intron 1 of 4)	intron (NM_001348712, intron 1 of 4)	1645	NM_001348712	109703458		NM_001348712	ENSG00000255154	HTD2	-	hydroxyacyl-thioester dehydratase type 2	protein-coding
216524	chr8	20516001	20516400	+	0	NA	Intergenic	Intergenic	98726	NR_145737	109616983		NR_145737		SNORD3F	RNU3P2|SNORD3P2|U3|U3.2	small nucleolar RNA, C/D box 3F	snoRNA
181592	chr5	43396721	43397370	+	0	NA	promoter-TSS (NM_001301875)	promoter-TSS (NM_001301875)	92	NM_001301875	56477		NM_019846	ENSG00000151882	CCL28	CCK1|MEC|SCYA28	C-C motif chemokine ligand 28	protein-coding
66962	chr14	65929671	65929830	+	0	NA	Intergenic	Intergenic	458648	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
127516	chr2	42300501	42300780	+	0	NA	intron (NM_019063, intron 13 of 22)	MamRep38|DNA|hAT	59398	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
108446	chr18	70174801	70175230	+	0	NA	intron (NM_173630, intron 11 of 48)	AluSx|SINE|Alu	30672	NM_001318520	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
36551	chr11	6615051	6615300	+	0	NA	exon (NM_000391, exon 11 of 13)	exon (NM_000391, exon 11 of 13)	-2959	NM_006284	6881		NM_006284	ENSG00000166337	TAF10	TAF2A|TAF2H|TAFII30	TATA-box binding protein associated factor 10	protein-coding
99013	chr17	48824851	48824950	+	0	NA	Intergenic	MER41B|LTR|ERV1	-6135	NM_001261390	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
5879	chr1	26780551	26780950	+	0	NA	exon (NM_006015, exon 20 of 20)	exon (NM_006015, exon 20 of 20)	-6304	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
71693	chr15	20194701	20195050	+	0	NA	Intergenic	Intergenic	-87869	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
225973	chr9	41190471	41190630	+	0	NA	Intergenic	L1ME3F|LINE|L1	-1149	NM_001286836	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
124569	chr2	662171	662850	+	0	NA	Intergenic	Intergenic	14194	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
111712	chr19	4323171	4323700	+	0	NA	TTS (NM_017720)	TTS (NM_017720)	15392	NM_001013841	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
151792	chr22	18157051	18157380	+	0	NA	intron (NM_017414, intron 1 of 10)	L1M3e|LINE|L1	7045	NM_017414	11274		NM_017414	ENSG00000184979	USP18	ISG43|PTORCH2|UBP43	ubiquitin specific peptidase 18	protein-coding
214657	chr7	150878051	150878450	+	0	NA	Intergenic	Intergenic	25733	NM_001091	26		NM_001091	ENSG00000002726	AOC1	ABP|ABP1|DAO|DAO1|KAO|KDAO	amine oxidase copper containing 1	protein-coding
45315	chr11	118168871	118169230	+	0	NA	intron (NM_004588, intron 1 of 3)	intron (NM_004588, intron 1 of 3)	7589	NM_004588	6327		NM_004588	ENSG00000149575	SCN2B	ATFB14	sodium voltage-gated channel beta subunit 2	protein-coding
179838	chr5	479601	479950	+	0	NA	intron (NR_125375, intron 5 of 6)	intron (NR_125375, intron 5 of 6)	6539	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
50887	chr12	49257321	49258200	+	0	NA	intron (NM_001303116, intron 2 of 4)	AluJb|SINE|Alu	-7322	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
141462	chr2	241059671	241059830	+	0	NA	intron (NM_001080437, intron 16 of 31)	L1ME3F|LINE|L1	42537	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
127831	chr2	44975751	44976050	+	0	NA	Intergenic	Intergenic	33552	NM_016932	10736		NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
17993	chr1	160519171	160520340	+	0	NA	intron (NM_001184714, intron 1 of 7)	L1MB5|LINE|L1	3500	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
168181	chr3	140922551	140923100	+	0	NA	Intergenic	Intergenic	-19011	NM_018155	55186		NM_018155	ENSG00000114120	SLC25A36	HHF8|PNC2	solute carrier family 25 member 36	protein-coding
231961	chr9	133148801	133150300	+	0	NA	promoter-TSS (NM_001042368)	promoter-TSS (NM_001042368)	-340	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
17822	chr1	159889271	159889430	+	0	NA	intron (NM_012337, intron 3 of 11)	AmnSINE1|SINE|5S-Deu-L2	10729	NR_130464	100422852		NR_130464	ENSG00000266458	MIR4259	-	microRNA 4259	ncRNA
53499	chr12	66304501	66305680	+	0	NA	non-coding (NR_135080, exon 2 of 13)	non-coding (NR_135080, exon 2 of 13)	2545	NR_135080	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
121000	chr19	45772051	45772900	+	0	NA	TTS (NR_147193)	TTS (NR_147193)	-3223	NM_175875	147912		NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
201554	chr6	149238571	149238880	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	18826	NR_149096	105378049		NR_149096	ENSG00000225924	TAB2-AS1	-	TAB2 antisense RNA 1	ncRNA
224186	chr9	5402271	5402530	+	0	NA	intron (NM_018465, intron 3 of 5)	LTR33|LTR|ERVL	35525	NM_018465	55848		NM_018465	ENSG00000107020	PLGRKT	AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT)	plasminogen receptor with a C-terminal lysine	protein-coding
124680	chr2	3423551	3424190	+	0	NA	intron (NM_016030, intron 4 of 11)	intron (NM_016030, intron 4 of 11)	44176	NM_016030	51112		NM_016030	ENSG00000171853	TRAPPC12	CGI-87|PEBAS|TTC-15|TTC15	trafficking protein particle complex subunit 12	protein-coding
15716	chr1	151021771	151022200	+	0	NA	intron (NM_001303243, intron 3 of 5)	AluJr4|SINE|Alu	13536	NR_130135	58497		NM_021222	ENSG00000143363	PRUNE1	DRES-17|DRES17|H-PRUNE|HTCD37|NMIHBA|PRUNE	prune exopolyphosphatase 1	protein-coding
138553	chr2	207610951	207611450	+	0	NA	3' UTR (NM_001330130, exon 4 of 4)	3' UTR (NM_001330130, exon 4 of 4)	13788	NM_145280	151194		NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase 21A, HSPA lysine	protein-coding
123353	chr19	53878471	53878630	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3647	NM_001316329	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
113033	chr19	7940951	7941250	+	0	NA	intron (NM_006351, intron 2 of 12)	intron (NM_006351, intron 2 of 12)	2566	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
214907	chr7	151451321	151452300	+	0	NA	Intergenic	Intergenic	-10997	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
235624	chrX	48114771	48114930	+	0	NA	intron (NR_028366, intron 5 of 7)	SVA_D|Retroposon|SVA	6868	NR_028366	280657		NM_173357		SSX6P	SSX6|SSXP2|dJ54B20.1|psiSSX2	SSX family member 6, pseudogene	pseudo
160509	chr3	30634621	30635200	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	28309	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
189854	chr5	177128501	177129550	+	0	NA	Intergenic	Intergenic	-4054	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
161111	chr3	38203921	38204180	+	0	NA	intron (NM_005109, intron 4 of 17)	L1M1|LINE|L1	38513	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
55353	chr12	104127351	104127750	+	0	NA	intron (NM_006166, intron 3 of 7)	AluSx1|SINE|Alu	10660	NM_006166	4801		NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	nuclear transcription factor Y subunit beta	protein-coding
104028	chr17	80125351	80125450	+	0	NA	Intergenic	AluJr|SINE|Alu	21728	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
118782	chr19	38395511	38396680	+	0	NA	non-coding (NR_073032, exon 6 of 6)	non-coding (NR_073032, exon 6 of 6)	5803	NR_073032	399473		NM_001039616	ENSG00000188766	SPRED3	Eve-3|spred-3	sprouty related EVH1 domain containing 3	protein-coding
81237	chr16	4594701	4595100	+	0	NA	intron (NM_001145011, intron 14 of 15)	intron (NM_001145011, intron 14 of 15)	19988	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
59779	chr13	30158601	30159100	+	0	NA	Intergenic	Intergenic	-5776	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
102983	chr17	76729501	76729730	+	0	NA	intron (NM_001378348, intron 1 of 4)	intron (NM_001378348, intron 1 of 4)	2776	NM_001378353	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
141575	chr2	241572901	241573300	+	0	NA	3' UTR (NM_032515, exon 5 of 5)	3' UTR (NM_032515, exon 5 of 5)	-13957	NR_033346	100379249		NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	ncRNA
162164	chr3	46980601	46981430	+	0	NA	intron (NM_015175, intron 1 of 53)	intron (NM_015175, intron 1 of 53)	995	NM_144716	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
174134	chr4	36226701	36227300	+	0	NA	intron (NR_146894, intron 2 of 32)	intron (NR_146894, intron 2 of 32)	16939	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
231855	chr9	132851151	132851550	+	0	NA	intron (NM_001371771, intron 5 of 12)	L1MD2|LINE|L1	26934	NM_001317958	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
8753	chr1	42708271	42708630	+	0	NA	Intergenic	AluJo|SINE|Alu	25314	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
128211	chr2	53993851	53995530	+	0	NA	intron (NM_001320587, intron 2 of 5)	MamGypsy2-LTR|LTR|Gypsy	23577	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
102212	chr17	75205051	75206400	+	0	NA	promoter-TSS (NM_024844)	promoter-TSS (NM_024844)	46	NM_024844	79902		NM_024844	ENSG00000125450	NUP85	FROUNT|NPHS17|Nup75	nucleoporin 85	protein-coding
48733	chr12	10712621	10712880	+	0	NA	intron (NM_003651, intron 5 of 9)	intron (NM_003651, intron 5 of 9)	10573	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
116549	chr19	18216371	18217130	+	0	NA	exon (NM_001369701, exon 11 of 14)	exon (NM_001369701, exon 11 of 14)	7743	NM_001098819	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
37759	chr11	32052151	32052450	+	0	NA	Intergenic	Intergenic	-10982	NR_120527	100506675		NR_120526	ENSG00000254584	LINC03031	-	long intergenic non-protein coding RNA 3031	ncRNA
91984	chr17	7426921	7427180	+	0	NA	exon (NM_175734, exon 3 of 3)	exon (NM_175734, exon 3 of 3)	1434	NM_175734	201243		NM_175734	ENSG00000184560	SPEM2	C17orf74	SPEM family member 2	protein-coding
184158	chr5	95646501	95647680	+	0	NA	5' UTR (NM_001131065, exon 1 of 6)	5' UTR (NM_001131065, exon 1 of 6)	211	NM_173362	317671		NM_173362	ENSG00000175449	RFESD	-	Rieske Fe-S domain containing	protein-coding
232914	chr9	136864021	136864480	+	0	NA	intron (NM_001281297, intron 1 of 4)	intron (NM_001281297, intron 1 of 4)	2058	NM_001281297	8721		NM_003792	ENSG00000107223	EDF1	CFAP280|EDF-1|MBF1	endothelial differentiation related factor 1	protein-coding
188676	chr5	157269101	157270450	+	0	NA	intron (NM_014376, intron 1 of 30)	intron (NM_014376, intron 1 of 30)	451	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
147544	chr20	59571521	59572080	+	0	NA	Intergenic	Intergenic	-5709	NM_001199505	116154		NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
200756	chr6	137817201	137817750	+	0	NA	Intergenic	Intergenic	-49784	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
235723	chrX	48913521	48913900	+	0	NA	3' UTR (NM_006875, exon 6 of 6)	3' UTR (NM_006875, exon 6 of 6)	-1752	NM_001282648	7355		NM_005660	ENSG00000102100	SLC35A2	CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL	solute carrier family 35 member A2	protein-coding
23840	chr1	234609901	234610400	+	0	NA	promoter-TSS (NM_001077397)	promoter-TSS (NM_001077397)	-625	NM_182972	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
215771	chr8	2118121	2118580	+	0	NA	intron (NM_003970, intron 28 of 36).2	intron (NM_003970, intron 28 of 36).2	41761	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
172852	chr4	3289001	3289400	+	0	NA	Intergenic	L1MB2|LINE|L1	-24947	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
41930	chr11	67295871	67296450	+	0	NA	intron (NM_207354, intron 6 of 14)	L1MB7|LINE|L1	6857	NM_001347901	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
121281	chr19	46716701	46717900	+	0	NA	promoter-TSS (NM_016457)	promoter-TSS (NM_016457)	-173	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
37279	chr11	14687571	14687730	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	43846	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
197184	chr6	63574211	63575350	+	0	NA	intron (NM_001385267, intron 1 of 5)	intron (NM_001385267, intron 1 of 5)	2300	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
136075	chr2	173136651	173136950	+	0	NA	intron (NM_133646, intron 2 of 11)	UCON25|Unknown|Unknown	60954	NM_016653	51776		NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
13741	chr1	116873921	116874580	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-35666	NM_020440	5738		NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
203015	chr6	163438471	163438630	+	0	NA	intron (NM_206854, intron 1 of 6)	Tigger3b|DNA|TcMar-Tigger	23832	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
10334	chr1	64909871	64910030	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	56599	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
93927	chr17	21298321	21298580	+	0	NA	exon (NM_145109, exon 2 of 12)	exon (NM_145109, exon 2 of 12)	10414	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
112159	chr19	5631971	5632530	+	0	NA	intron (NM_001320571, intron 2 of 18)	L1MC4|LINE|L1	9167	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
176295	chr4	87243501	87243700	+	0	NA	Intergenic	L1MB7|LINE|L1	-22982	NM_001292006	57563		NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
219402	chr8	70605251	70605730	+	0	NA	intron (NM_001317804, intron 2 of 11)	intron (NM_001317804, intron 2 of 11)	2179	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
156682	chr22	41663051	41663350	+	0	NA	intron (NM_001288976, intron 12 of 12)	AluJb|SINE|Alu	25667	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
47691	chr12	6376221	6377700	+	0	NA	intron (NM_001270987, intron 1 of 9)	intron (NM_001270987, intron 1 of 9)	397	NM_001159575	6337		NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|LIDLS3|PHA1B1|SCNEA|SCNN1	sodium channel epithelial 1 subunit alpha	protein-coding
209725	chr7	87075921	87076280	+	0	NA	Intergenic	Intergenic	-16446	NM_001142749	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
186328	chr5	134635571	134635730	+	0	NA	Intergenic	AluJo|SINE|Alu	-2822	NM_001033503	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
97909	chr17	45130121	45131130	+	0	NA	intron (NM_133373, intron 1 of 14)	intron (NM_133373, intron 1 of 14)	1890	NM_133373	113026		NM_133373	ENSG00000161714	PLCD3	PLC-delta-3	phospholipase C delta 3	protein-coding
88320	chr16	84294871	84295030	+	0	NA	promoter-TSS (NM_001282466)	promoter-TSS (NM_001282466)	72	NM_001282467	58189		NM_021197	ENSG00000103175	WFDC1	PS20	WAP four-disulfide core domain 1	protein-coding
185553	chr5	131364351	131365200	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	100722	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
151547	chr21	46540271	46540630	+	0	NA	intron (NM_206891, intron 17 of 19)	intron (NM_206891, intron 17 of 19)	64632	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
223420	chr8	143946171	143946930	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	-1271	NR_030383	724031		NR_030383	ENSG00000207574	MIR661	MIRN661|hsa-mir-661	microRNA 661	ncRNA
143595	chr20	31694371	31695200	+	0	NA	intron (NR_134257, intron 1 of 2)	MIRb|SINE|MIR	-26722	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
217254	chr8	27309401	27309600	+	0	NA	intron (NM_171982, intron 1 of 5)	intron (NM_171982, intron 1 of 5)	1772	NM_001362813	23087		NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
227201	chr9	88126371	88126530	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	8535	NM_001166137	645961		NM_001166137	ENSG00000177910	SPATA31C2	FAM75C2	SPATA31 subfamily C member 2	protein-coding
142744	chr20	10432651	10432750	+	0	NA	promoter-TSS (NM_018848)	promoter-TSS (NM_018848)	-775	NM_018848	8195		NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	MKKS centrosomal shuttling protein	protein-coding
20961	chr1	202341151	202342600	+	0	NA	promoter-TSS (NM_001310326)	promoter-TSS (NM_001310326)	61	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
13978	chr1	120558301	120559180	+	0	NA	promoter-TSS (NR_168400)	promoter-TSS (NR_168400)	55	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
111441	chr19	3808151	3808900	+	0	NA	intron (NM_015174, intron 17 of 18)	intron (NM_015174, intron 17 of 18)	-6726	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
127337	chr2	39108951	39109250	+	0	NA	intron (NM_001382394, intron 1 of 22)	AluJb|SINE|Alu	11951	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
6181	chr1	27436321	27437080	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	44078	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
67444	chr14	70665401	70665600	+	0	NA	intron (NM_015351, intron 1 of 2)	intron (NM_015351, intron 1 of 2)	23584	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
139428	chr2	222864201	222864480	+	0	NA	intron (NM_001354159, intron 1 of 14)	L2|LINE|L2	3304	NM_001354158	2181		NM_004457	ENSG00000123983	ACSL3	ACS3|FACL3|LACS 3|LACS3|PRO2194	acyl-CoA synthetase long chain family member 3	protein-coding
82916	chr16	21756971	21757350	+	0	NA	non-coding (NR_003676, exon 8 of 9)	non-coding (NR_003676, exon 8 of 9)	27589	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
31012	chr10	88755771	88755930	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-4170	NM_001102469	643418		NM_001102469	ENSG00000204020	LIPN	ARCI8|LI4|LIPL4|bA186O14.3	lipase family member N	protein-coding
122716	chr19	49971101	49971500	+	0	NA	exon (NM_001348364, exon 4 of 9)	exon (NM_001348364, exon 4 of 9)	1636	NM_001348364	400709		NM_001348364	ENSG00000161643	SIGLEC16	SIGLECP16|Siglec-P16	sialic acid binding Ig like lectin 16	protein-coding
117057	chr19	18995701	18996030	+	0	NA	intron (NR_147914, intron 8 of 11)	intron (NR_147914, intron 8 of 11)	37652	NR_147914	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
164501	chr3	61381851	61381950	+	0	NA	Intergenic	Intergenic	-130439	NR_148921	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
120561	chr19	44984651	44984750	+	0	NA	intron (NM_001282175, intron 5 of 13)	AluSq2|SINE|Alu	-16764	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
92873	chr17	16417871	16418400	+	0	NA	intron (NM_016113, intron 2 of 14)	intron (NM_016113, intron 2 of 14)	2564	NM_016113	51393		NM_016113	ENSG00000187688	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel subfamily V member 2	protein-coding
235170	chrX	41178101	41178530	+	0	NA	intron (NM_001039590, intron 21 of 44)	AluSx1|SINE|Alu	92870	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
153772	chr22	29575671	29576030	+	0	NA	intron (NM_001202502, intron 1 of 9)	AluSx|SINE|Alu	5246	NM_001202502	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
142643	chr20	5750201	5750950	+	0	NA	intron (NM_152504, intron 1 of 2)	intron (NM_152504, intron 1 of 2)	174	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
227080	chr9	85600601	85601400	+	0	NA	intron (NM_001330701, intron 17 of 25)	L1M2|LINE|L1	140954	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
59259	chr13	24097401	24097830	+	0	NA	intron (NM_001286792, intron 3 of 14)	HAL1M8|LINE|L1	-63105	NM_153023	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
35185	chr11	788901	789250	+	0	NA	intron (NM_016564, intron 1 of 1)	intron (NM_016564, intron 1 of 1)	1015	NM_016564	51286		NM_016564	ENSG00000184524	CEND1	BM88	cell cycle exit and neuronal differentiation 1	protein-coding
28540	chr10	50538751	50539330	+	0	NA	intron (NM_147156, intron 2 of 10)	intron (NM_147156, intron 2 of 10)	84916	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
69316	chr14	93184301	93186050	+	0	NA	promoter-TSS (NM_001098621).2	promoter-TSS (NM_001098621).2	-142	NM_001098621	26175		NM_015676	ENSG00000153485	LYSET	C14orf109|DMAN|GCAF|TMEM251	lysosomal enzyme trafficking factor	protein-coding
46852	chr11	133907551	133908050	+	0	NA	3' UTR (NM_001277285, exon 20 of 20)	3' UTR (NM_001277285, exon 20 of 20)	-9219	NR_039846	100616119		NR_039846	ENSG00000284020	MIR4697	-	microRNA 4697	ncRNA
228506	chr9	100299551	100299650	+	0	NA	intron (NR_134606, intron 16 of 16)	intron (NR_134606, intron 16 of 16)	52971	NM_001161584	54881		NM_017746	ENSG00000136891	TEX10	Ipi1|bA208F1.2	testis expressed 10	protein-coding
233306	chr9	137390371	137391000	+	0	NA	intron (NM_017820, intron 2 of 21)	intron (NM_017820, intron 2 of 21)	32477	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
135676	chr2	168581651	168582150	+	0	NA	intron (NM_203463, intron 3 of 9)	L1ME3B|LINE|L1	-1043	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
192013	chr6	16404101	16404700	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	165813	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
220252	chr8	97639551	97640600	+	0	NA	Intergenic	Intergenic	-4109	NM_178812	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
190315	chr5	179610001	179611050	+	0	NA	TTS (NM_025158)	TTS (NM_025158)	-6784	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
207628	chr7	45013271	45014030	+	0	NA	intron (NM_001167934, intron 1 of 8)	L1MC4|LINE|L1	13449	NM_001363459	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
29004	chr10	63421351	63422150	+	0	NA	intron (NM_001322258, intron 1 of 24)	MLT1B|LTR|ERVL-MaLR	-8825	NR_134312	105378330		NR_134312		JMJD1C-AS2	-	JMJD1C antisense RNA 2	ncRNA
24061	chr1	235308221	235308880	+	0	NA	intron (NM_016374, intron 2 of 23)	SVA_D|Retroposon|SVA	-18666	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
178494	chr4	150297971	150298230	+	0	NA	intron (NM_001199282, intron 53 of 56)	intron (NM_001199282, intron 53 of 56)	219655	NR_036614	166614		NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
162932	chr3	49466451	49466550	+	0	NA	Intergenic	Intergenic	-2203	NM_001177643	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
56797	chr12	120205351	120205650	+	0	NA	intron (NR_038924, intron 1 of 3)	AluY|SINE|Alu	4209	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
174962	chr4	49321451	49321550	+	0	NA	Intergenic	Intergenic	334858	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
183572	chr5	80153601	80154350	+	0	NA	intron (NM_001174072, intron 8 of 11)	intron (NM_001174072, intron 8 of 11)	-70310	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
6455	chr1	28256051	28257550	+	0	NA	Intergenic	AluSx|SINE|Alu	-2718	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
155654	chr22	39007551	39008280	+	0	NA	Intergenic	Intergenic	-6342	NM_014508	27350		NM_014508	ENSG00000244509	APOBEC3C	A3C|APOBEC1L|ARDC2|ARDC4|ARP5|PBI|bK150C2.3	apolipoprotein B mRNA editing enzyme catalytic subunit 3C	protein-coding
39440	chr11	60925921	60926430	+	0	NA	intron (NM_017870, intron 1 of 10)	L2b|LINE|L2	1715	NM_178031	54972		NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
195742	chr6	39454871	39455030	+	0	NA	intron (NM_001289021, intron 12 of 21)	L1PA2|LINE|L1	-23560	NM_001351566	221458		NM_145027	ENSG00000164627	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
18216	chr1	161013151	161014430	+	0	NA	intron (NM_001382733, intron 1 of 9)	(TCCC)n|Simple_repeat|Simple_repeat	7362	NM_001348091	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
188649	chr5	157235771	157236480	+	0	NA	intron (NM_005546, intron 8 of 16)	AluSx1|SINE|Alu	-29998	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
228887	chr9	112720001	112720400	+	0	NA	Intergenic	AluJo|SINE|Alu	-2083	NM_001329587	58493		NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
116576	chr19	18243971	18244130	+	0	NA	intron (NM_000923, intron 1 of 15)	AluSx1|SINE|Alu	4150	NM_000923	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
118850	chr19	38640101	38640300	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7449	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
291	chr1	947651	948350	+	0	NA	intron (NM_015658, intron 14 of 18)	intron (NM_015658, intron 14 of 18)	11256	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
2191	chr1	8560901	8561380	+	0	NA	intron (NM_012102, intron 5 of 23)	intron (NM_012102, intron 5 of 23)	-66227	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
167705	chr3	130759601	130760060	+	0	NA	Intergenic	Intergenic	-13001	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
214878	chr7	151402301	151402700	+	0	NA	intron (NM_001284261, intron 1 of 4)	intron (NM_001284261, intron 1 of 4)	-6661	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
40248	chr11	63668571	63668930	+	0	NA	intron (NM_001290048, intron 1 of 12)	intron (NM_001290048, intron 1 of 12)	2626	NM_015459	25923		NM_015459	ENSG00000184743	ATL3	HSN1F	atlastin GTPase 3	protein-coding
21497	chr1	205735351	205735650	+	0	NA	intron (NM_022731, intron 1 of 6)	intron (NM_022731, intron 1 of 6)	14682	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
221817	chr8	128018301	128018500	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	9502	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
204936	chr7	6257751	6258050	+	0	NA	intron (NM_004227, intron 1 of 12)	MLT1L|LTR|ERVL-MaLR	14724	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
155904	chr22	39545301	39546550	+	0	NA	Intergenic	Intergenic	-13177	NM_194326	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
192319	chr6	21914101	21914300	+	0	NA	intron (NR_015410, intron 5 of 11)	intron (NR_015410, intron 5 of 11)	232993	NR_034143	729177		NR_034143		NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA
34844	chr11	316051	316600	+	0	NA	Intergenic	CpG	2285	NM_003641	8519		NM_003641	ENSG00000185885	IFITM1	9-27|CD225|DSPA2a|IFI17|LEU13	interferon induced transmembrane protein 1	protein-coding
10653	chr1	70355801	70356000	+	0	NA	intron (NR_168352, intron 1 of 3)	AluSx|SINE|Alu	1089	NR_168349	11147		NM_007071	ENSG00000197568	ANKRD13C-DT	HHLA3	ANKRD13C divergent transcript	ncRNA
5529	chr1	25807551	25807850	+	0	NA	intron (NM_206926, intron 3 of 11)	intron (NM_206926, intron 3 of 11)	7507	NM_020451	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
49137	chr12	14936171	14936800	+	0	NA	intron (NM_152321, intron 2 of 6)	intron (NM_152321, intron 2 of 6)	2052	NM_152321	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
169608	chr3	171248371	171248530	+	0	NA	intron (NM_001161560, intron 2 of 31)	L2|LINE|L2	-141691	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
44826	chr11	114036001	114036650	+	0	NA	Intergenic	CpG	-23386	NM_001354750	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
74527	chr15	60481321	60481580	+	0	NA	intron (NR_120341, intron 1 of 4)	AluSg|SINE|Alu	2272	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
93715	chr17	19506771	19507600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26669	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
155753	chr22	39205451	39206350	+	0	NA	Intergenic	Intergenic	35009	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
181747	chr5	50709501	50710230	+	0	NA	intron (NM_024615, intron 2 of 25)	(GT)n|Simple_repeat|Simple_repeat	42451	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
122133	chr19	48842521	48843450	+	0	NA	intron (NM_020904, intron 16 of 19)	intron (NM_020904, intron 16 of 19)	-6494	NM_016246	51171		NM_016246	ENSG00000087076	HSD17B14	DHRS10|SDR47C1|retSDR3	hydroxysteroid 17-beta dehydrogenase 14	protein-coding
93674	chr17	19239001	19239200	+	0	NA	intron (NM_001102664, intron 1 of 7)	intron (NM_001102664, intron 1 of 7)	1723	NM_001102664	22905		NM_014964	ENSG00000072134	EPN2	EHB21	epsin 2	protein-coding
110155	chr19	1640651	1640750	+	0	NA	intron (NM_003200, intron 3 of 18)	AluY|SINE|Alu	11915	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
183465	chr5	79245451	79245930	+	0	NA	intron (NM_152405, intron 1 of 10)	AluSx1|SINE|Alu	9559	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
60861	chr13	45718001	45718200	+	0	NA	Intergenic	Intergenic	15631	NM_001286342	220082		NM_152719	ENSG00000174015	CBY2	NURIT|SPERT	chibby family member 2	protein-coding
169958	chr3	179160821	179161280	+	0	NA	intron (NM_006218, intron 1 of 20)	intron (NM_006218, intron 1 of 20)	12693	NM_006218	5290		NM_006218	ENSG00000121879	PIK3CA	CCM4|CLAPO|CLOVE|CWS5|HMH|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding
16985	chr1	155973351	155974030	+	0	NA	intron (NM_001350112, intron 1 of 21)	AluSx1|SINE|Alu	4485	NM_001350111	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
170103	chr3	183122371	183122830	+	0	NA	3' UTR (NM_014398, exon 6 of 6)	3' UTR (NM_014398, exon 6 of 6)	-23013	NR_120639	56922		NM_020166	ENSG00000078070	MCCC1	MCC-B|MCCA|MCCCalpha	methylcrotonyl-CoA carboxylase subunit 1	protein-coding
83369	chr16	25181201	25181600	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-32368	NR_039998	100506655		NR_039998	ENSG00000260034	LCMT1-AS2	-	LCMT1 antisense RNA 2	ncRNA
151825	chr22	18414701	18415100	+	0	NA	Intergenic	Intergenic	-6484	NR_165629	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
172780	chr4	2938351	2938750	+	0	NA	3' UTR (NM_001291978, exon 18 of 18)	3' UTR (NM_001291978, exon 18 of 18)	3004	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
45233	chr11	117954621	117954880	+	0	NA	Intergenic	AluSz6|SINE|Alu	-25297	NM_001206790	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
219174	chr8	66532851	66534250	+	0	NA	Intergenic	LTR90A|LTR|LTR	39984	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
108479	chr18	70672421	70673480	+	0	NA	Intergenic	Intergenic	-21996	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
60168	chr13	40178051	40178350	+	0	NA	Intergenic	Intergenic	-3609	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
238477	chrX	153408351	153408600	+	0	NA	Intergenic	Intergenic	-7125	NM_001367770	649238		NM_001351293	ENSG00000214897	PNMA6E	-	PNMA family member 6E	protein-coding
194530	chr6	33305421	33306080	+	0	NA	intron (NM_172209, intron 2 of 6).2	intron (NM_172209, intron 2 of 6).2	-6362	NM_001243738	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
60400	chr13	40960371	40960730	+	0	NA	intron (NM_001370331, intron 2 of 8)	L1MC4|LINE|L1	21732	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
4393	chr1	20932301	20933500	+	0	NA	intron (NM_001198801, intron 11 of 34)	Tigger1|DNA|TcMar-Tigger	55532	NR_031657	100302155		NR_031657	ENSG00000221808	MIR1256	MIRN1256|hsa-mir-1256	microRNA 1256	ncRNA
34914	chr11	404571	405150	+	0	NA	TTS (NM_001303029)	TTS (NM_001303029)	10139	NM_001135054	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
219745	chr8	81074271	81075680	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	37093	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
665	chr1	1366451	1368130	+	0	NA	Intergenic	Intergenic	-3749	NM_001282582	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
140179	chr2	231661051	231661150	+	0	NA	Intergenic	Intergenic	-47425	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
18028	chr1	160577571	160577900	+	0	NA	intron (NM_003874, intron 1 of 6)	MIRb|SINE|MIR	1761	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
186757	chr5	139320901	139321530	+	0	NA	intron (NM_199189, intron 12 of 17)	AluSx|SINE|Alu	-20617	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
76307	chr15	74373371	74374800	+	0	NA	Intergenic	CpG	-4997	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
154624	chr22	36313221	36313600	+	0	NA	intron (NM_002473, intron 13 of 40)	AluYc|SINE|Alu	-26503	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
60201	chr13	40433551	40434250	+	0	NA	intron (NR_024506, intron 5 of 5)	MER1B|DNA|hAT-Charlie	47106	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
93175	chr17	17798051	17798530	+	0	NA	exon (NM_030665, exon 3 of 6)	exon (NM_030665, exon 3 of 6)	15255	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
11332	chr1	89522751	89523050	+	0	NA	Intergenic	MER4CL34|LTR|ERV1	-1929	NM_015350	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
128205	chr2	53969151	53969700	+	0	NA	intron (NM_014614, intron 1 of 46)	intron (NM_014614, intron 1 of 46)	1568	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
27414	chr10	31383921	31384180	+	0	NA	intron (NM_001323638, intron 4 of 12)	AluSz|SINE|Alu	15705	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
157076	chr22	42607371	42607930	+	0	NA	intron (NM_001278657, intron 1 of 8)	SVA_B|Retroposon|SVA	7233	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
163984	chr3	53101021	53101280	+	0	NA	intron (NM_052859, intron 10 of 12)	intron (NM_052859, intron 10 of 12)	29285	NM_052859	91869		NM_052859	ENSG00000163933	RFT1	CDG1N	RFT1 homolog	protein-coding
2184	chr1	8525171	8526600	+	0	NA	intron (NM_012102, intron 8 of 23)	intron (NM_012102, intron 8 of 23)	-30972	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
103163	chr17	77427521	77428280	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	22823	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
187147	chr5	140550171	140550330	+	0	NA	TTS (NM_003732)	TTS (NM_003732)	2588	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
99708	chr17	50864201	50864480	+	0	NA	intron (NM_001243877, intron 2 of 2)	intron (NM_001243877, intron 2 of 2)	2014	NM_001243885	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
230933	chr9	129402221	129402680	+	0	NA	Intergenic	Intergenic	65527	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
166973	chr3	125591871	125592230	+	0	NA	intron (NM_022776, intron 1 of 12)	intron (NM_022776, intron 1 of 12)	3447	NM_022776	114885		NM_022776	ENSG00000144909	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein like 11	protein-coding
193278	chr6	30006021	30006940	+	0	NA	non-coding (NR_024240, exon 2 of 7)	non-coding (NR_024240, exon 2 of 7)	509	NR_024240	3137		NR_024240	ENSG00000290574	HLA-J	CDA12|D6S203|HLA-59|HLA-CDA12	major histocompatibility complex, class I, J (pseudogene)	pseudo
68510	chr14	88556821	88558330	+	0	NA	Intergenic	AluSx|SINE|Alu	-2568	NM_007039	11099		NM_007039	ENSG00000070778	PTPN21	PTPD1|PTPRL10	protein tyrosine phosphatase non-receptor type 21	protein-coding
29346	chr10	69449621	69450280	+	0	NA	Intergenic	Intergenic	-1515	NM_012339	23555		NM_012339	ENSG00000099282	TSPAN15	2700063A19Rik|NET-7|NET7|TM4SF15	tetraspanin 15	protein-coding
179194	chr4	173330601	173331430	+	0	NA	TTS (NM_002129)	TTS (NM_002129)	2754	NM_001130689	3148		NM_002129	ENSG00000164104	HMGB2	HMG2	high mobility group box 2	protein-coding
30837	chr10	86413021	86413930	+	0	NA	Intergenic	Intergenic	-46680	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
24753	chr1	248817121	248817380	+	0	NA	intron (NM_030645, intron 2 of 6)	intron (NM_030645, intron 2 of 6)	8116	NM_001322463	80851		NM_030645	ENSG00000175137	SH3BP5L	-	SH3 binding domain protein 5 like	protein-coding
30014	chr10	73778571	73778730	+	0	NA	Intergenic	Intergenic	-3398	NM_203298	118487		NM_203298	ENSG00000172586	CHCHD1	C10orf34|C2360|MRP-S37|mS37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding
98077	chr17	45563401	45563780	+	0	NA	Intergenic	Intergenic	38272	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
160798	chr3	32977821	32978480	+	0	NA	Intergenic	Intergenic	26506	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
218474	chr8	51534851	51535150	+	0	NA	intron (NM_144651, intron 4 of 22)	SVA_E|Retroposon|SVA	274445	NM_144651	137902		NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin like	protein-coding
109179	chr19	346271	347200	+	0	NA	Intergenic	AluJb|SINE|Alu	-1894	NM_017550	54531		NM_017550	ENSG00000105556	MIER2	KIAA1193|Mi-er2	MIER family member 2	protein-coding
239177	chrY	12511801	12512200	+	0	NA	Intergenic	Intergenic	-90410	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
154723	chr22	36453271	36453630	+	0	NA	Intergenic	Intergenic	28190	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
4864	chr1	23745671	23746250	+	0	NA	intron (NM_003198, intron 1 of 10)	intron (NM_003198, intron 1 of 10)	2594	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
182049	chr5	55919371	55920330	+	0	NA	intron (NM_001242637, intron 15 of 15)	intron (NM_001242637, intron 15 of 15)	66528	NM_001242639	133396		NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R|zcytoR17	interleukin 31 receptor A	protein-coding
53993	chr12	75346271	75346580	+	0	NA	intron (NM_001304964, intron 2 of 5)	AluSg|SINE|Alu	11755	NM_152779	256710		NM_152779	ENSG00000173401	GLIPR1L1	ALKN2972|PRO7434	GLIPR1 like 1	protein-coding
194309	chr6	32820151	32820850	+	0	NA	Intergenic	Intergenic	-3498	NM_002120	3112		NM_002120	ENSG00000241106	HLA-DOB	DOB|HLA_DOB	major histocompatibility complex, class II, DO beta	protein-coding
101421	chr17	67398651	67399200	+	0	NA	intron (NM_181671, intron 1 of 9)	HSMAR1|DNA|TcMar-Mariner	21644	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
53822	chr12	69329671	69330370	+	0	NA	Intergenic	HERVK22-int|LTR|ERVK	-18361	NM_000239	4069		NM_000239	ENSG00000090382	LYZ	LYZF1|LZM	lysozyme	protein-coding
17499	chr1	156733621	156734750	+	0	NA	exon (NM_015997, exon 6 of 8)	exon (NM_015997, exon 6 of 8)	-5419	NM_001370150	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
141224	chr2	239400201	239402250	+	0	NA	promoter-TSS (NR_135575)	promoter-TSS (NR_135575)	-205	NM_001378414	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
190807	chr6	1385451	1385750	+	0	NA	Intergenic	Intergenic	-3976	NM_001452	2295		NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
174898	chr4	49091571	49092280	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	105283	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
126172	chr2	26412171	26412730	+	0	NA	intron (NM_145038, intron 1 of 16)	intron (NM_145038, intron 1 of 16)	10530	NM_145038	92749		NM_145038	ENSG00000157856	DRC1	C2orf39|CCDC164|CILD21|SPGF80	dynein regulatory complex subunit 1	protein-coding
217648	chr8	30075051	30075700	+	0	NA	intron (NM_016127, intron 1 of 5)	intron (NM_016127, intron 1 of 5)	7689	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
55514	chr12	105083901	105084800	+	0	NA	intron (NR_027752, intron 1 of 22)	intron (NR_027752, intron 1 of 22)	108	NM_001034173	160428		NM_001034173	ENSG00000136010	ALDH1L2	mtFDH	aldehyde dehydrogenase 1 family member L2	protein-coding
182192	chr5	56818401	56818600	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	2951	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
99342	chr17	49857601	49857800	+	0	NA	Intergenic	AluJb|SINE|Alu	-9683	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
148349	chr20	63833701	63834300	+	0	NA	Intergenic	Intergenic	-2736	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
39241	chr11	57666971	57669100	+	0	NA	promoter-TSS (NM_015457)	promoter-TSS (NM_015457)	-79	NM_015457	25921		NM_015457	ENSG00000156599	ZDHHC5	DHHC5|ZNF375	zinc finger DHHC-type palmitoyltransferase 5	protein-coding
89526	chr16	89181971	89182650	+	0	NA	intron (NM_004933, intron 3 of 13)	intron (NM_004933, intron 3 of 13)	10562	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
63458	chr13	114128571	114130300	+	0	NA	intron (NM_001320821, intron 1 of 25).2	A-rich|Low_complexity|Low_complexity	3188	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
161105	chr3	38173671	38174930	+	0	NA	intron (NM_005109, intron 1 of 17)	L2a|LINE|L2	8763	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
66796	chr14	64715971	64716330	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	11726	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
195405	chr6	36782601	36783180	+	0	NA	intron (NM_001376889, intron 9 of 21)	MIRb|SINE|MIR	-17095	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
76936	chr15	78071421	78071700	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	6092	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
126404	chr2	27643871	27644230	+	0	NA	intron (NR_026735, intron 10 of 11)	AluSz|SINE|Alu	15000	NM_007266	11321		NM_007266	ENSG00000198522	GPN1	ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1	GPN-loop GTPase 1	protein-coding
107259	chr18	42009471	42009780	+	0	NA	intron (NM_002647, intron 10 of 24)	intron (NM_002647, intron 10 of 24)	54391	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
194003	chr6	31790271	31790700	+	0	NA	intron (NM_006295, intron 8 of 29).4	AluSq|SINE|Alu	5267	NM_006295	7407		NM_006295	ENSG00000204394	VARS1	G7A|NDMSCA|VARS|VARS2	valyl-tRNA synthetase 1	protein-coding
116451	chr19	18057471	18057630	+	0	NA	Intergenic	AluSx1|SINE|Alu	29384	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
237257	chrX	110265701	110265900	+	0	NA	intron (NM_001171689, intron 3 of 7)	intron (NM_001171689, intron 3 of 7)	-40740	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
182343	chr5	59161571	59162330	+	0	NA	intron (NM_001364600, intron 7 of 7)	intron (NM_001364600, intron 7 of 7)	114165	NM_001197220	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
14347	chr1	143980121	143980730	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-6906	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
191683	chr6	13487301	13489000	+	0	NA	promoter-TSS (NM_018988)	promoter-TSS (NM_018988)	-513	NM_001242629	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
160766	chr3	32686721	32687730	+	0	NA	intron (NR_046352, intron 1 of 16)	intron (NR_046352, intron 1 of 16)	2037	NM_015442	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
190586	chr5	181090651	181090750	+	0	NA	Intergenic	Intergenic	34604	NM_001258283	26693		NM_001258283	ENSG00000185372	OR2V1	OR2V1P|OST265	olfactory receptor family 2 subfamily V member 1	protein-coding
204832	chr7	5704451	5705300	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	7035	NR_106934	102466203		NR_106934	ENSG00000283419	MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
182227	chr5	56896401	56896600	+	0	NA	TTS (NM_005921)	TTS (NM_005921)	-12760	NM_001323022	133383		NM_153706	ENSG00000155542	SETD9	C5orf35	SET domain containing 9	protein-coding
180045	chr5	1072271	1072530	+	0	NA	intron (NM_006598, intron 17 of 23).2	intron (NM_006598, intron 17 of 23).2	-9426	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
28031	chr10	43227271	43227630	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	2289	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
96881	chr17	42100171	42100730	+	0	NA	TTS (NM_024119)	TTS (NM_024119)	-1977	NM_001378270	201181		NM_001013624	ENSG00000187595	ZNF385C	-	zinc finger protein 385C	protein-coding
59317	chr13	24303021	24303450	+	0	NA	3' UTR (NM_001286793, exon 9 of 9)	3' UTR (NM_001286793, exon 9 of 9)	-3931	NM_001303138	338872		NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and TNF related 9	protein-coding
227493	chr9	91191721	91192250	+	0	NA	Intergenic	Intergenic	72923	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
177819	chr4	123599671	123600250	+	0	NA	Intergenic	Intergenic	-50031	NR_027105	285419		NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
35684	chr11	1888761	1890700	+	0	NA	intron (NM_001289005, intron 10 of 10)	intron (NM_001289005, intron 10 of 10)	-7029	NR_120534	101927624		NR_120534		LINC01150	2G7|TCONS_00019134	long intergenic non-protein coding RNA 1150	ncRNA
162836	chr3	49276421	49278780	+	0	NA	promoter-TSS (NM_198562)	promoter-TSS (NM_198562)	-368	NM_198562	375341		NM_198562	ENSG00000188315	C3orf62	MAPS	chromosome 3 open reading frame 62	protein-coding
198613	chr6	107729851	107730480	+	0	NA	intron (NM_001286408, intron 4 of 6)	intron (NM_001286408, intron 4 of 6)	1985	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
221305	chr8	123028001	123028480	+	0	NA	intron (NM_001330601, intron 1 of 6)	L1MC5|LINE|L1	-2468	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
148043	chr20	63220671	63221630	+	0	NA	Intergenic	Intergenic	-5019	NM_017798	54915		NM_017798	ENSG00000149658	YTHDF1	C20orf21|DF1	YTH N6-methyladenosine RNA binding protein F1	protein-coding
95057	chr17	32609051	32609450	+	0	NA	intron (NM_015194, intron 20 of 21)	intron (NM_015194, intron 20 of 21)	122257	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
202154	chr6	155187201	155187630	+	0	NA	intron (NM_001384547, intron 13 of 25)	intron (NM_001384547, intron 13 of 25)	-29551	NM_001010927	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
130332	chr2	84990221	84990500	+	0	NA	intron (NM_020122, intron 1 of 6)	L2a|LINE|L2	19199	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
174866	chr4	48726451	48727030	+	0	NA	intron (NM_015030, intron 1 of 63)	intron (NM_015030, intron 1 of 63)	53539	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
218102	chr8	38998301	38999250	+	0	NA	intron (NR_027638, intron 1 of 20)	L2|LINE|L2	1789	NR_027638	8754		NM_003816	ENSG00000168615	ADAM9	CORD9|MCMP|MDC9|Mltng	ADAM metallopeptidase domain 9	protein-coding
32963	chr10	110458121	110458930	+	0	NA	Intergenic	Intergenic	-39382	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
124706	chr2	3585671	3586030	+	0	NA	Intergenic	Intergenic	-8982	NM_001255983	78989		NM_024027	ENSG00000118004	COLEC11	3MC2|CL-11|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
8761	chr1	42731071	42731580	+	0	NA	Intergenic	Intergenic	8911	NM_148960	149461		NM_148960	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
162511	chr3	48585271	48585730	+	0	NA	intron (NM_000094, intron 32 of 118)	intron (NM_000094, intron 32 of 118)	-6523	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
96188	chr17	39739471	39739700	+	0	NA	promoter-TSS (NM_001242443)	promoter-TSS (NM_001242443)	-382	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
184523	chr5	101942371	101942530	+	0	NA	Intergenic	L1PA16|LINE|L1	353834	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
167442	chr3	129070751	129071250	+	0	NA	Intergenic	MIR|SINE|MIR	10221	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
155248	chr22	37951901	37952100	+	0	NA	intron (NM_032561, intron 2 of 6)	AluSp|SINE|Alu	1601	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
133803	chr2	127806271	127806730	+	0	NA	intron (NM_001006623, intron 1 of 7)	AluSx|SINE|Alu	4671	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
161564	chr3	42771271	42771730	+	0	NA	intron (NR_122070, intron 1 of 1)	AluJr|SINE|Alu	888	NR_122070	729083		NR_122070	ENSG00000225611	CCDC13-AS2	LINC02158	CCDC13 antisense RNA 2	ncRNA
9912	chr1	54409371	54409880	+	0	NA	Intergenic	Intergenic	-3231	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
142175	chr20	2865461	2866800	+	0	NA	intron (NM_022575, intron 22 of 23)	intron (NM_022575, intron 22 of 23)	1935	NM_002836	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
162497	chr3	48571271	48572030	+	0	NA	intron (NM_000094, intron 92 of 118)	intron (NM_000094, intron 92 of 118)	7327	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
191784	chr6	14132651	14133150	+	0	NA	intron (NM_001040280, intron 3 of 4)	intron (NM_001040280, intron 3 of 4)	15128	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
217960	chr8	38270651	38270950	+	0	NA	3' UTR (NM_023034, exon 24 of 24)	3' UTR (NM_023034, exon 24 of 24)	-1568	NM_001354454	84513		NM_032483	ENSG00000147535	PLPP5	DPPL1|HTPAP|PPAPDC1B	phospholipid phosphatase 5	protein-coding
96723	chr17	41652621	41652880	+	0	NA	Intergenic	Intergenic	-12551	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
216275	chr8	12499651	12500430	+	0	NA	intron (NR_040091, intron 5 of 6)	intron (NR_040091, intron 5 of 6)	63027	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
200980	chr6	139369521	139370650	+	0	NA	Intergenic	Intergenic	4128	NM_001168389	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
156557	chr22	41443121	41443450	+	0	NA	intron (NM_016272, intron 1 of 1)	intron (NM_016272, intron 1 of 1)	3516	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
137054	chr2	190888101	190889000	+	0	NA	intron (NM_014905, intron 1 of 17)	MER58A|DNA|hAT-Charlie	7729	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
178239	chr4	143336171	143337530	+	0	NA	promoter-TSS (NM_207123)	promoter-TSS (NM_207123)	-26	NM_207123	2549		NM_002039	ENSG00000109458	GAB1	DFNB26	GRB2 associated binding protein 1	protein-coding
82846	chr16	21511101	21512230	+	0	NA	Intergenic	Intergenic	-5530	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
179929	chr5	760451	760750	+	0	NA	intron (NM_001351303, intron 4 of 13)	intron (NM_001351303, intron 4 of 13)	24129	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
146628	chr20	50187551	50188100	+	0	NA	intron (NR_125739, intron 5 of 6)	intron (NR_125739, intron 5 of 6)	-2758	NM_001285878	1051		NM_005194	ENSG00000172216	CEBPB	C/EBP-beta|IL6DBP|NF-IL6|TCF5	CCAAT enhancer binding protein beta	protein-coding
138128	chr2	202297521	202297780	+	0	NA	intron (NM_015934, intron 11 of 14)	intron (NM_015934, intron 11 of 14)	4599	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
165899	chr3	106317601	106317800	+	0	NA	Intergenic	L1PB1|LINE|L1	-448299	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
67055	chr14	67695401	67696550	+	0	NA	promoter-TSS (NM_001252650)	promoter-TSS (NM_001252650)	-211	NM_016026	51109		NM_016026	ENSG00000072042	RDH11	ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1	retinol dehydrogenase 11	protein-coding
6194	chr1	27451351	27451680	+	0	NA	intron (NM_006990, intron 1 of 8)	L2|LINE|L2	38652	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
198714	chr6	108166671	108167300	+	0	NA	intron (NM_003269, intron 1 of 8)	CpG-23912	963	NM_003269	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
221667	chr8	125973471	125973850	+	0	NA	Intergenic	Intergenic	-22463	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
7830	chr1	36309421	36310030	+	0	NA	intron (NM_024676, intron 7 of 12)	intron (NM_024676, intron 7 of 12)	2618	NM_024676	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
175460	chr4	72296051	72296150	+	0	NA	intron (NM_014243, intron 18 of 21)	L2a|LINE|L2	256968	NM_053036	10886		NM_004885	ENSG00000056291	NPFFR2	GPR74|HLWAR77|NPFF2|NPGPR	neuropeptide FF receptor 2	protein-coding
223856	chr9	104071	104900	+	0	NA	Intergenic	SATR1|Satellite|Satellite	13932	NM_207305	2298		NM_207305	ENSG00000170122	FOXD4	FKHL9|FOXD4A|FREAC-5|FREAC5	forkhead box D4	protein-coding
236370	chrX	70930571	70930730	+	0	NA	intron (NM_032803, intron 1 of 11)	intron (NM_032803, intron 1 of 11)	446	NM_001048164	84889		NM_032803	ENSG00000165349	SLC7A3	ATRC3|CAT-3|CAT3	solute carrier family 7 member 3	protein-coding
137440	chr2	196927401	196928600	+	0	NA	Intergenic	L3|LINE|CR1	-1293	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
86384	chr16	66602851	66604200	+	0	NA	promoter-TSS (NM_001363918)	promoter-TSS (NM_001363918)	-471	NM_144601	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
215627	chr8	70951	71130	+	0	NA	non-coding (NR_168395, exon 6 of 8)	non-coding (NR_168395, exon 6 of 8)	42062	NR_168395	101927506		NR_168395		LOC101927506	-	uncharacterized LOC101927506	ncRNA
196793	chr6	45710501	45710780	+	0	NA	Intergenic	MamRep564|Unknown|Unknown	226957	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
191266	chr6	6044701	6044900	+	0	NA	Intergenic	Intergenic	-37195	NM_001278710	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
103310	chr17	77886051	77886750	+	0	NA	Intergenic	Intergenic	-2313	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
148376	chr20	63888571	63888930	+	0	NA	intron (NM_199360, intron 7 of 8)	intron (NM_199360, intron 7 of 8)	-6376	NM_025219	80331		NM_025219	ENSG00000101152	DNAJC5	CLN4|CLN4B|CSP|DNAJC5A|NCL|mir-941-2|mir-941-3|mir-941-4|mir-941-5	DnaJ heat shock protein family (Hsp40) member C5	protein-coding
199590	chr6	119129251	119129800	+	0	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	19668	NM_001288576	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
42222	chr11	68042001	68042600	+	0	NA	promoter-TSS (NM_006053)	promoter-TSS (NM_006053)	-680	NM_006053	10312		NM_006019	ENSG00000110719	TCIRG1	ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3	T cell immune regulator 1, ATPase H+ transporting V0 subunit a3	protein-coding
234904	chrX	31070151	31070450	+	0	NA	TTS (NM_031894)	TTS (NM_031894)	1741	NM_031894	53940		NM_031894	ENSG00000132446	FTHL17	CT38	ferritin heavy chain like 17	protein-coding
236845	chrX	79266801	79267550	+	0	NA	Intergenic	Intergenic	100159	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
120114	chr19	42185371	42186250	+	0	NA	Intergenic	L2c|LINE|L2	31867	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
160330	chr3	27669651	27669750	+	0	NA	Intergenic	Intergenic	52623	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
111559	chr19	4050271	4050680	+	0	NA	intron (NM_015898, intron 2 of 2)	intron (NM_015898, intron 2 of 2)	15054	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
105058	chr17	82080221	82081750	+	0	NA	intron (NM_004104, intron 38 of 42)	intron (NM_004104, intron 38 of 42)	9155	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
152147	chr22	19989071	19989230	+	0	NA	intron (NM_001670, intron 3 of 19)	intron (NM_001670, intron 3 of 19)	25397	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
169481	chr3	169668021	169668650	+	0	NA	Intergenic	Intergenic	-4623	NM_001366473	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
234654	chrX	20131601	20131800	+	0	NA	intron (NM_001412, intron 5 of 6)	AluJr|SINE|Alu	4713	NR_023358	100158262		NR_023358		SCARNA9L	-	small Cajal body-specific RNA 9 like	ncRNA
182076	chr5	55984251	55984350	+	0	NA	intron (NR_157112, intron 1 of 17)	intron (NR_157112, intron 1 of 17)	10663	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
45488	chr11	118610531	118611480	+	0	NA	intron (NM_001144759, intron 1 of 20)	CpG	3390	NM_001144759	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
109146	chr18	80253821	80254680	+	0	NA	Intergenic	Intergenic	-6736	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
44763	chr11	112219571	112220350	+	0	NA	Intergenic	Intergenic	-6468	NM_000317	5805		NM_000317	ENSG00000150787	PTS	PTPS	6-pyruvoyltetrahydropterin synthase	protein-coding
126096	chr2	25851751	25852350	+	0	NA	intron (NM_018263, intron 1 of 11)	intron (NM_018263, intron 1 of 11)	-21149	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
209640	chr7	77754001	77754400	+	0	NA	intron (NM_198467, intron 3 of 7)	AluJr|SINE|Alu	44234	NM_032936	85025		NM_032936	ENSG00000135211	TMEM60	C7orf35|DC32	transmembrane protein 60	protein-coding
175791	chr4	77802421	77803100	+	0	NA	intron (NM_001365006, intron 1 of 11)	MIRb|SINE|MIR	16304	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
104202	chr17	80474421	80475080	+	0	NA	intron (NM_002522, intron 2 of 4)	intron (NM_002522, intron 2 of 4)	1857	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
183888	chr5	87329071	87329630	+	0	NA	intron (NM_001364075, intron 8 of 8)	AluJb|SINE|Alu	-5722	NR_130929	644285		NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
209996	chr7	92880151	92880980	+	0	NA	intron (NR_110087, intron 2 of 2)	L1MA7|LINE|L1	-43992	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
70877	chr14	103842271	103842430	+	0	NA	intron (NM_015316, intron 1 of 16)	AluSx1|SINE|Alu	5225	NM_015316	23368		NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
18398	chr1	161408751	161409080	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-41039	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
40576	chr11	64358901	64359790	+	0	NA	intron (NM_003942, intron 1 of 16)	CpG	183	NM_003942	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
117112	chr19	19202871	19204530	+	0	NA	promoter-TSS (NM_001300945)	promoter-TSS (NM_001300945)	-286	NM_001300945	126382		NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
157192	chr22	43103971	43104530	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-6500	NM_001197	638		NM_001197	ENSG00000100290	BIK	BIP1|BP4|NBK	BCL2 interacting killer	protein-coding
9607	chr1	52360701	52361100	+	0	NA	intron (NM_032449, intron 5 of 23)	intron (NM_032449, intron 5 of 23)	5305	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
228769	chr9	110254071	110254680	+	0	NA	intron (NM_003329, intron 1 of 4)	AluSq|SINE|Alu	2132	NM_003329	7295		NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1|TXN1|Trx80	thioredoxin	protein-coding
125695	chr2	20344401	20345530	+	0	NA	intron (NM_001352925, intron 1 of 19)	AluY|SINE|Alu	5879	NM_001352927	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
23910	chr1	235006451	235006830	+	0	NA	Intergenic	L1MB3|LINE|L1	-42641	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
160284	chr3	26881751	26881850	+	0	NA	Intergenic	L1PA3|LINE|L1	187243	NM_001317811	116135		NM_052953	ENSG00000179796	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
196694	chr6	44920721	44921350	+	0	NA	intron (NM_001350324, intron 10 of 11)	intron (NM_001350324, intron 10 of 11)	276735	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
46647	chr11	128692701	128693400	+	0	NA	promoter-TSS (NM_001271010)	promoter-TSS (NM_001271010)	-866	NM_001167681	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
212917	chr7	130908951	130909650	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	4010	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
37601	chr11	19828151	19828500	+	0	NA	intron (NM_145117, intron 1 of 37)	L1MB4|LINE|L1	-68242	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	ncRNA
127385	chr2	41456171	41456530	+	0	NA	Intergenic	Intergenic	-421205	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
157049	chr22	42577651	42578450	+	0	NA	intron (NR_002184, intron 2 of 6)	intron (NR_002184, intron 2 of 6)	3961	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
214582	chr7	150629521	150629980	+	0	NA	intron (NM_001244072, intron 2 of 2)	intron (NM_001244072, intron 2 of 2)	2635	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
206544	chr7	35520151	35520500	+	0	NA	Intergenic	Intergenic	174810	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
59119	chr13	21329101	21329500	+	0	NA	intron (NR_103840, intron 2 of 5)	intron (NR_103840, intron 2 of 5)	10264	NR_144554	2871		NR_144554		GRK6P1	GPRK6L|GPRK6P|GRK6PS	G protein-coupled receptor kinase 6 pseudogene 1	pseudo
167711	chr3	130904501	130904700	+	0	NA	intron (NM_001001487, intron 2 of 28)	L1MC4a|LINE|L1	10050	NM_014382	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
233233	chr9	137248071	137248930	+	0	NA	promoter-TSS (NM_001001710)	promoter-TSS (NM_001001710)	-749	NM_001001710	401565		NM_001001710	ENSG00000188163	CIMIP2A	FAM166A|HSD46	ciliary microtubule inner protein 2A	protein-coding
9748	chr1	53294421	53295250	+	0	NA	intron (NM_017522, intron 2 of 15)	intron (NM_017522, intron 2 of 15)	33235	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
60886	chr13	46135951	46136580	+	0	NA	intron (NM_002298, intron 13 of 15)	L2c|LINE|L2	-31189	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
79789	chr16	1386771	1387280	+	0	NA	intron (NM_001372107, intron 9 of 14)	intron (NM_001372107, intron 9 of 14)	-7373	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
234753	chrX	23667171	23668450	+	0	NA	exon (NM_006406, exon 1 of 7)	exon (NM_006406, exon 1 of 7)	317	NM_006406	10549		NM_006406	ENSG00000123131	PRDX4	AOE37-2|AOE372|HEL-S-97n|PRX-4	peroxiredoxin 4	protein-coding
140146	chr2	231598751	231599250	+	0	NA	Intergenic	Intergenic	6136	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
15176	chr1	149113471	149114780	+	0	NA	Intergenic	Intergenic	-31814	NM_001037675	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
19087	chr1	171094651	171095150	+	0	NA	intron (NM_001319174, intron 2 of 7)	L1PB3|LINE|L1	3995	NM_001319173	2328		NM_006894	ENSG00000007933	FMO3	FMOII|TMAU|dJ127D3.1	flavin containing dimethylaniline monoxygenase 3	protein-coding
185128	chr5	119293871	119294030	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	25191	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
190978	chr6	2977001	2977200	+	0	NA	Intergenic	Intergenic	-5307	NM_001297700	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
14149	chr1	121116771	121117330	+	0	NA	TTS (NR_160943)	TTS (NR_160943)	242	NR_160942	337875		NR_027337	ENSG00000291123	H2BP1	HIST2H2BA	H2B histone pseudogene 1	pseudo
57978	chr12	124005651	124005750	+	0	NA	intron (NM_001204298, intron 3 of 4)	intron (NM_001204298, intron 3 of 4)	32485	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
42714	chr11	72679221	72679480	+	0	NA	Intergenic	Intergenic	-4928	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
94082	chr17	27566771	27567130	+	0	NA	intron (NM_001367810, intron 2 of 18)	MIRb|SINE|MIR	-64238	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
78383	chr15	91855701	91856400	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	1746	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
209968	chr7	92717801	92718830	+	0	NA	intron (NM_001145306, intron 4 of 7)	intron (NM_001145306, intron 4 of 7)	115644	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
90791	chr17	2101501	2102100	+	0	NA	intron (NM_001256827, intron 6 of 11)	MIR|SINE|MIR	-13039	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
20986	chr1	202643451	202644280	+	0	NA	promoter-TSS (NM_001136504)	promoter-TSS (NM_001136504)	-412	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
203280	chr6	169789801	169790870	+	0	NA	non-coding (NR_026781, exon 2 of 2)	non-coding (NR_026781, exon 2 of 2)	262	NR_026780	80069		NM_025002	ENSG00000231690	LINC00574	C6orf208|CRALA|dJ182D15.1	long intergenic non-protein coding RNA 574	ncRNA
64695	chr14	32939351	32939850	+	0	NA	intron (NM_173159, intron 1 of 11)	CpG	721	NM_001164749	64067		NM_022123	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
118426	chr19	35784871	35785230	+	0	NA	exon (NM_001366178, exon 17 of 21)	exon (NM_001366178, exon 17 of 21)	9486	NM_001366178	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
42675	chr11	72593121	72593550	+	0	NA	intron (NM_001243784, intron 6 of 30)	(CA)n|Simple_repeat|Simple_repeat	21795	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
80457	chr16	2681921	2683530	+	0	NA	exon (NM_018992, exon 1 of 6)	exon (NM_018992, exon 1 of 6)	202	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
143407	chr20	29411001	29411930	+	0	NA	Intergenic	CpG	5496	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
18156	chr1	160775321	160775850	+	0	NA	Intergenic	Intergenic	-20589	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
178167	chr4	142368651	142369180	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	34218	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
56549	chr12	116910651	116911380	+	0	NA	promoter-TSS (NM_153348)	promoter-TSS (NM_153348)	59	NM_012174	26259		NM_012174	ENSG00000174989	FBXW8	FBW6|FBW8|FBX29|FBXO29|FBXW6	F-box and WD repeat domain containing 8	protein-coding
164515	chr3	63814351	63814650	+	0	NA	Intergenic	L3|LINE|CR1	-4799	NM_001355236	132200		NM_001355236	ENSG00000163632	C3orf49	-	chromosome 3 open reading frame 49	protein-coding
31343	chr10	93075051	93075550	+	0	NA	exon (NM_000783, exon 4 of 7)	exon (NM_000783, exon 4 of 7)	1407	NM_000783	1592		NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	cytochrome P450 family 26 subfamily A member 1	protein-coding
157227	chr22	43256801	43257200	+	0	NA	intron (NM_173050, intron 6 of 21)	intron (NM_173050, intron 6 of 21)	-18942	NR_134582	101927447		NR_134582	ENSG00000203527	SCUBE1-AS1	-	SCUBE1 antisense RNA 1	ncRNA
114048	chr19	10973121	10973580	+	0	NA	intron (NM_001374457, intron 1 of 33)	intron (NM_001374457, intron 1 of 33)	-10774	NM_001128845	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
84035	chr16	29530251	29530550	+	0	NA	Intergenic	Intergenic	-24526	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
190034	chr5	177509771	177510980	+	0	NA	promoter-TSS (NM_001375794)	promoter-TSS (NM_001375794)	26	NM_001375796	79930		NM_024872	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
26202	chr10	14557721	14558280	+	0	NA	intron (NM_001320736, intron 1 of 4)	intron (NM_001320736, intron 1 of 4)	-1820	NM_001320738	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
63810	chr14	21440801	21441000	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	-3625	NM_020920	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
64660	chr14	31559851	31560430	+	0	NA	Intergenic	SVA_B|Retroposon|SVA	-1264	NM_025152	80224		NM_025152	ENSG00000151413	NUBPL	C14orf127|IND1|MC1DN21|huInd1	NUBP iron-sulfur cluster assembly factor, mitochondrial	protein-coding
190301	chr5	179598851	179599230	+	0	NA	intron (NM_001040452, intron 14 of 17).2	L2a|LINE|L2	4701	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
228835	chr9	112168051	112168550	+	0	NA	intron (NM_022486, intron 1 of 16)	intron (NM_022486, intron 1 of 16)	6997	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
69298	chr14	93105071	93105730	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	10525	NM_001142594	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
157343	chr22	44671221	44672500	+	0	NA	intron (NM_001017529, intron 1 of 7)	MIR|SINE|MIR	3313	NM_001017528	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
236527	chrX	72104351	72104450	+	0	NA	intron (NM_001013627, intron 1 of 7)	Charlie4a|DNA|hAT-Charlie	27515	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
106529	chr18	21134821	21135180	+	0	NA	Intergenic	L1MEf|LINE|L1	-23187	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
120636	chr19	45067421	45068050	+	0	NA	intron (NM_001278439, intron 13 of 19)	intron (NM_001278439, intron 13 of 19)	-7892	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
57741	chr12	122942501	122942900	+	0	NA	intron (NM_019624, intron 6 of 10)	AluJb|SINE|Alu	23763	NM_001243014	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
191298	chr6	6656121	6656580	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-33524	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
90982	chr17	2706271	2706430	+	0	NA	intron (NM_001366662, intron 1 of 25)	MIR3|SINE|MIR	5414	NM_001366661	23277		NM_015229	ENSG00000132361	CLUH	CLU1	clustered mitochondria homolog	protein-coding
24086	chr1	235336071	235336230	+	0	NA	intron (NM_001371477, intron 2 of 3)	AluSc|SINE|Alu	7142	NM_001371478	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
203001	chr6	163340851	163340950	+	0	NA	non-coding (NR_033862, exon 3 of 4)	non-coding (NR_033862, exon 3 of 4)	6133	NR_033862	401282		NR_033862	ENSG00000285564	DKFZp451B082	-	uncharacterized LOC401282	ncRNA
220130	chr8	94813371	94813980	+	0	NA	Intergenic	Intergenic	-9612	NM_017864	55656		NM_017864	ENSG00000164941	INTS8	C8orf52|INT8|NEDCHS	integrator complex subunit 8	protein-coding
55135	chr12	98605971	98606330	+	0	NA	3' UTR (NM_002635, exon 8 of 8)	3' UTR (NM_002635, exon 8 of 8)	6515	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
113500	chr19	10093171	10093780	+	0	NA	TTS (NM_001308277)	TTS (NM_001308277)	7158	NM_001308277	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
203334	chr6	170221671	170221830	+	0	NA	Intergenic	Intergenic	40819	NR_002787	154449		NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
172956	chr4	3606701	3606900	+	0	NA	Intergenic	Intergenic	29931	NR_040045	285492		NM_173661		LINC00955	-	long intergenic non-protein coding RNA 955	ncRNA
58522	chr12	132203351	132203800	+	0	NA	exon (NM_021808, exon 3 of 7)	exon (NM_021808, exon 3 of 7)	2453	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
154170	chr22	31298201	31298400	+	0	NA	Intergenic	AluJr|SINE|Alu	-5766	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
121533	chr19	47234801	47235000	+	0	NA	Intergenic	AluSz|SINE|Alu	-2233	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
8996	chr1	44672201	44672730	+	0	NA	intron (NM_024587, intron 1 of 2)	intron (NM_024587, intron 1 of 2)	-1409	NR_145816	109623472		NR_145816		SNORD145	-	small nucleolar RNA, C/D box 145	snoRNA
197352	chr6	73452001	73452680	+	0	NA	promoter-TSS (NM_138441)	promoter-TSS (NM_138441)	-43	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
80935	chr16	3820921	3821580	+	0	NA	intron (NM_004380, intron 2 of 30)	MamRep605|LTR?|LTR?	58870	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
39958	chr11	62568071	62568430	+	0	NA	intron (NM_001404, intron 5 of 9)	AluSc8|SINE|Alu	-1179	NR_106805	102465447		NR_106805	ENSG00000276102	MIR6747	hsa-mir-6747	microRNA 6747	ncRNA
96206	chr17	39762621	39762880	+	0	NA	3' UTR (NM_001257414, exon 5 of 5)	3' UTR (NM_001257414, exon 5 of 5)	15475	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
144171	chr20	34084271	34084930	+	0	NA	3' UTR (NM_007367, exon 9 of 9)	3' UTR (NM_007367, exon 9 of 9)	27643	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
24273	chr1	236424371	236424730	+	0	NA	intron (NM_080738, intron 3 of 5)	LTR53-int|LTR|ERVL	29137	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
6236	chr1	27529451	27530280	+	0	NA	Intergenic	Intergenic	-39698	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
129522	chr2	69685501	69686280	+	0	NA	intron (NM_001320698, intron 2 of 14)	MER63B|DNA|hAT-Blackjack	42082	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
97403	chr17	43387571	43388700	+	0	NA	intron (NR_027413, intron 1 of 3)	AluSc8|SINE|Alu	763	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
172606	chr4	2502871	2503530	+	0	NA	intron (NM_001185009, intron 5 of 8)	intron (NM_001185009, intron 5 of 8)	-32175	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
126068	chr2	25749671	25750030	+	0	NA	exon (NM_001369346, exon 10 of 11)	exon (NM_001369346, exon 10 of 11)	44841	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
76109	chr15	72507021	72507680	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	33020	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
36976	chr11	11841321	11842900	+	0	NA	5' UTR (NM_001330208, exon 1 of 29)	5' UTR (NM_001330208, exon 1 of 29)	138	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
227215	chr9	88534101	88535500	+	0	NA	promoter-TSS (NM_001161625)	promoter-TSS (NM_001161625)	-301	NM_001161625	158046		NM_145283	ENSG00000130045	NXNL2	C9orf121|RDCVF2|RdCVF2L	nucleoredoxin like 2	protein-coding
19439	chr1	174711671	174711830	+	0	NA	intron (NM_001366447, intron 17 of 20)	LTR12C|LTR|ERV1	10755	NM_001366452	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
20262	chr1	193832851	193832950	+	0	NA	Intergenic	(CTTC)n|Simple_repeat|Simple_repeat	528155	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
190850	chr6	1618051	1618530	+	0	NA	Intergenic	Intergenic	8375	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
139976	chr2	230893501	230893700	+	0	NA	intron (NR_038238, intron 1 of 3)	intron (NR_038238, intron 1 of 3)	7054	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
41114	chr11	65552971	65553930	+	0	NA	exon (NM_001164266, exon 4 of 27)	exon (NM_001164266, exon 4 of 27)	4778	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
193614	chr6	30739051	30739600	+	0	NA	intron (NM_001318875, intron 7 of 11).2	intron (NM_001318875, intron 7 of 11).2	3362	NM_005803	10211		NM_005803	ENSG00000137312	FLOT1	-	flotillin 1	protein-coding
174659	chr4	40916971	40917130	+	0	NA	intron (NM_173075, intron 9 of 16)	intron (NM_173075, intron 9 of 16)	-59858	NM_001166054	323		NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
108505	chr18	74117071	74117230	+	0	NA	intron (NM_001142958, intron 8 of 9)	intron (NM_001142958, intron 8 of 9)	30684	NM_152676	201456		NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
83686	chr16	28418921	28419230	+	0	NA	intron (NM_001199142, intron 1 of 21)	AluY|SINE|Alu	7379	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
143044	chr20	21302901	21304300	+	0	NA	exon (NM_001317960, exon 1 of 30)	exon (NM_001317960, exon 1 of 30)	102	NM_001317960	22803		NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
85080	chr16	32932651	32933050	+	0	NA	Intergenic	Intergenic	-47708	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
28945	chr10	63219321	63219780	+	0	NA	intron (NR_134512, intron 1 of 21)	intron (NR_134512, intron 1 of 21)	49673	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
37309	chr11	14762371	14762730	+	0	NA	intron (NM_001363569, intron 1 of 15)	L2a|LINE|L2	118746	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
187196	chr5	140662651	140662950	+	0	NA	TTS (NM_006083)	TTS (NM_006083)	-1999	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
202715	chr6	158851571	158851730	+	0	NA	intron (NR_028496, intron 2 of 2)	intron (NR_028496, intron 2 of 2)	5982	NR_028496	202459		NM_145303	ENSG00000293101	OSTCP1	DC2L|OSTCL	oligosaccharyltransferase complex subunit pseudogene 1	pseudo
174909	chr4	49101071	49101650	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	114718	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
185037	chr5	115623951	115624580	+	0	NA	intron (NM_181836, intron 1 of 2)	L2a|LINE|L2	1771	NM_181836	51014		NM_181836	ENSG00000134970	TMED7	CGI-109|Tag|p24g3|p24gamma3|p27	transmembrane p24 trafficking protein 7	protein-coding
33327	chr10	116272071	116272700	+	0	NA	promoter-TSS (NM_145793)	promoter-TSS (NM_145793)	90	NM_001382559	2674		NM_005264	ENSG00000151892	GFRA1	GDNFR|GDNFR-alpha-1|GDNFRA|GFR-ALPHA-1|GFRalpha-1|RET1L|RETL1|RHDA4|TRNR1	GDNF family receptor alpha 1	protein-coding
61904	chr13	77331401	77331800	+	0	NA	Intergenic	L1MA1|LINE|L1	-4506	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
155267	chr22	38017521	38017780	+	0	NA	intron (NM_001301130, intron 5 of 5)	L3|LINE|CR1	28856	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
55703	chr12	107775071	107775530	+	0	NA	exon (NM_203436, exon 1 of 1)	exon (NM_203436, exon 1 of 1)	915	NM_203436	121549		NM_203436	ENSG00000187855	ASCL4	ASH-4|HASH4|bHLHa44	achaete-scute family bHLH transcription factor 4	protein-coding
152072	chr22	19728871	19729030	+	0	NA	Intergenic	Intergenic	5411	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
218285	chr8	42319621	42319880	+	0	NA	intron (NM_001190720, intron 14 of 20)	intron (NM_001190720, intron 14 of 20)	-18744	NM_002690	5423		NM_002690	ENSG00000070501	POLB	-	DNA polymerase beta	protein-coding
90266	chr17	978051	978780	+	0	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	1361	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
54180	chr12	77065021	77066160	+	0	NA	promoter-TSS (NM_203394)	promoter-TSS (NM_203394)	-21	NM_203394	144455		NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
106390	chr18	13380001	13380200	+	0	NA	intron (NM_001378098, intron 1 of 5)	intron (NM_001378098, intron 1 of 5)	41497	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
117533	chr19	20657971	20658480	+	0	NA	intron (NM_145297, intron 1 of 3)	intron (NM_145297, intron 1 of 3)	3346	NM_001076675	199777		NM_145297	ENSG00000188171	ZNF626	-	zinc finger protein 626	protein-coding
193713	chr6	31178301	31179350	+	0	NA	intron (NR_152839, intron 1 of 2).7	L2|LINE|L2	7492	NR_152836	100130889		NM_001134284		PSORS1C3	NCRNA00196	psoriasis susceptibility 1 candidate 3	ncRNA
58726	chr12	132587551	132588400	+	0	NA	Intergenic	Intergenic	5978	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
74710	chr15	63119271	63119430	+	0	NA	Intergenic	Intergenic	-2511	NM_032857	114294		NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
132685	chr2	108908701	108908900	+	0	NA	intron (NM_022336, intron 9 of 11)	intron (NM_022336, intron 9 of 11)	80420	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
50332	chr12	47078071	47078230	+	0	NA	exon (NM_001143668, exon 3 of 3)	exon (NM_001143668, exon 3 of 3)	-1453	NM_001281429	91523		NM_138371	ENSG00000179715	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
215452	chr7	157887421	157887680	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	32965	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
20591	chr1	198757901	198758550	+	0	NA	TTS (NM_080921).2	TTS (NM_080921).2	100757	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
199023	chr6	111174051	111174150	+	0	NA	intron (NM_018593, intron 2 of 5)	intron (NM_018593, intron 2 of 5)	60266	NR_145796	109623478		NR_145796		SNORD166	-	small nucleolar RNA, C/D box 166	snoRNA
70169	chr14	100319951	100320250	+	0	NA	Intergenic	Intergenic	-3239	NM_207117	283600		NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDCMP|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
205818	chr7	24595721	24596050	+	0	NA	intron (NM_001303037, intron 1 of 11)	L2a|LINE|L2	22433	NM_001303037	51678		NM_016447	ENSG00000105926	PALS2	MPP6|VAM-1|VAM1|p55T	protein associated with LIN7 2, MAGUK p55 family member	protein-coding
189503	chr5	173242571	173242930	+	0	NA	Intergenic	Intergenic	-7544	NM_004387	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
186700	chr5	138751401	138752130	+	0	NA	intron (NR_134244, intron 1 of 1)	AluJb|SINE|Alu	1544	NR_134245	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
72032	chr15	28321551	28322830	+	0	NA	promoter-TSS (NM_004667).2	promoter-TSS (NM_004667).2	-11	NM_004667	8924		NM_004667	ENSG00000128731	HERC2	D15F37S1|MRT38|SHEP1|jdf2|p528	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding
129726	chr2	70903371	70903530	+	0	NA	intron (NM_012476, intron 1 of 2)	intron (NM_012476, intron 1 of 2)	2874	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
211215	chr7	102628451	102628550	+	0	NA	Intergenic	Intergenic	-11742	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
165371	chr3	93470381	93470700	+	0	NA	Intergenic	SAR|Satellite|Satellite	503356	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
191032	chr6	3158951	3159050	+	0	NA	Intergenic	Intergenic	-1456	NM_001069	7280		NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
91449	chr17	4789351	4791450	+	0	NA	3' UTR (NM_001014985, exon 4 of 4)	3' UTR (NM_001014985, exon 4 of 4)	1436	NM_001014985	388323		NM_001014985	ENSG00000182327	GLTPD2	-	glycolipid transfer protein domain containing 2	protein-coding
95441	chr17	36134721	36134980	+	0	NA	Intergenic	Intergenic	31023	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
23635	chr1	230426001	230426740	+	0	NA	promoter-TSS (NM_001258311)	promoter-TSS (NM_001258311)	-38	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
138804	chr2	216146401	216146600	+	0	NA	intron (NM_021141, intron 13 of 20)	intron (NM_021141, intron 13 of 20)	37152	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
198155	chr6	90939971	90940130	+	0	NA	Intergenic	Intergenic	-352978	NM_145332	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
201803	chr6	150003201	150003600	+	0	NA	intron (NR_024045, intron 1 of 3)	ERV3-16A3_I-int|LTR|ERVL	1744	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
132418	chr2	105813471	105813930	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	-38147	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
123016	chr19	51113351	51113650	+	0	NA	Intergenic	Intergenic	-5091	NM_145232	90353		NM_145232	ENSG00000142544	CTU1	ATPBD3|NCS6	cytosolic thiouridylase subunit 1	protein-coding
161913	chr3	45991421	45991830	+	0	NA	intron (NM_024513, intron 1 of 17)	intron (NM_024513, intron 1 of 17)	4199	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
165658	chr3	101850401	101852550	+	0	NA	intron (NM_031419, intron 1 of 11)	intron (NM_031419, intron 1 of 11)	1961	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
199329	chr6	113856901	113857850	+	0	NA	promoter-TSS (NM_002356)	promoter-TSS (NM_002356)	30	NM_002356	4082		NM_002356	ENSG00000277443	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
156500	chr22	41293171	41293530	+	0	NA	intron (NM_001317930, intron 1 of 15)	AluJo|SINE|Alu	-7163	NM_001278651	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
159703	chr3	15623551	15624650	+	0	NA	intron (NM_001281725, intron 1 of 3)	L1MC4|LINE|L1	22131	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
84258	chr16	30028071	30028230	+	0	NA	TTS (NM_001353379)	TTS (NM_001353379)	1934	NM_001318504	83723		NM_031478	ENSG00000149926	TLCD3B	CORD22|FAM57B|FP1188	TLC domain containing 3B	protein-coding
185210	chr5	119470651	119471050	+	0	NA	intron (NR_164654, intron 2 of 24)	intron (NR_164654, intron 2 of 24)	18353	NM_001374502	3295		NM_000414	ENSG00000133835	HSD17B4	DBP|MFE-2|MFP-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid 17-beta dehydrogenase 4	protein-coding
127559	chr2	42359251	42360500	+	0	NA	non-coding (NR_134948, exon 1 of 3)	non-coding (NR_134948, exon 1 of 3)	163	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
217667	chr8	30096801	30097000	+	0	NA	intron (NM_015344, intron 1 of 3)	intron (NM_015344, intron 1 of 3)	1492	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
161282	chr3	39292921	39293180	+	0	NA	Intergenic	Intergenic	-11315	NM_001171174	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
48604	chr12	10328851	10329030	+	0	NA	non-coding (NR_147040, exon 5 of 5)	non-coding (NR_147040, exon 5 of 5)	9352	NR_159946	113523642		NR_159946	ENSG00000256288	LINC02617	-	long intergenic non-protein coding RNA 2617	ncRNA
173201	chr4	6791871	6792030	+	0	NA	intron (NM_001100590, intron 1 of 8)	THE1B|LTR|ERVL-MaLR	9218	NM_001100590	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
200687	chr6	137240221	137240480	+	0	NA	Intergenic	AluJr|SINE|Alu	-20965	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
130689	chr2	86520371	86520530	+	0	NA	intron (NR_036454, intron 1 of 3)	MSTA|LTR|ERVL-MaLR	42993	NM_001193517	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
177420	chr4	112327721	112328330	+	0	NA	intron (NM_001253884, intron 2 of 14)	intron (NM_001253884, intron 2 of 14)	30656	NM_001102406	80216		NM_025144	ENSG00000073331	ALPK1	8430410J10Rik|LAK|ROSAH	alpha kinase 1	protein-coding
30638	chr10	80452171	80455580	+	0	NA	promoter-TSS (NM_001351267)	promoter-TSS (NM_001351267)	-435	NM_001351267	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
16580	chr1	155011621	155012500	+	0	NA	intron (NM_001377451, intron 4 of 5)	intron (NM_001377451, intron 4 of 5)	9258	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
165908	chr3	106533951	106534590	+	0	NA	Intergenic	L1PA8|LINE|L1	-664869	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
89655	chr16	89353901	89354100	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	33548	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
231163	chr9	129882621	129883030	+	0	NA	TTS (NM_001008563)	TTS (NM_001008563)	13220	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
108164	chr18	62788901	62789100	+	0	NA	intron (NM_194449, intron 1 of 16)	intron (NM_194449, intron 1 of 16)	73459	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
219469	chr8	73349351	73349450	+	0	NA	intron (NR_125388, intron 1 of 5)	intron (NR_125388, intron 1 of 5)	7061	NR_125388	101926926		NR_125388	ENSG00000250295	RDH10-AS1	-	RDH10 antisense RNA 1	ncRNA
168983	chr3	152405051	152405380	+	0	NA	intron (NM_001314057, intron 3 of 11)	intron (NM_001314057, intron 3 of 11)	-64225	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
15415	chr1	150255321	150256630	+	0	NA	Intergenic	Intergenic	-1799	NM_012113	23632		NM_012113	ENSG00000118298	CA14	CAXiV	carbonic anhydrase 14	protein-coding
237081	chrX	103688771	103689300	+	0	NA	promoter-TSS (NM_001142432)	promoter-TSS (NM_001142432)	-877	NM_001142419	9643		NM_012286	ENSG00000123562	MORF4L2	MORFL2|MRGX	mortality factor 4 like 2	protein-coding
146501	chr20	49891301	49891700	+	0	NA	non-coding (NR_048538, exon 14 of 14)	non-coding (NR_048538, exon 14 of 14)	22239	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
225171	chr9	33850421	33850880	+	0	NA	intron (NM_017811, intron 1 of 4)	intron (NM_017811, intron 1 of 4)	33490	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
3426	chr1	15846871	15848900	+	0	NA	5' UTR (NM_015001, exon 1 of 15)	5' UTR (NM_015001, exon 1 of 15)	178	NM_015001	23013		NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RATARS|RBM15C|SHARP	spen family transcriptional repressor	protein-coding
130560	chr2	85714221	85714480	+	0	NA	Intergenic	MIR3|SINE|MIR	19992	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
168212	chr3	141249171	141249730	+	0	NA	intron (NM_152282, intron 3 of 7)	intron (NM_152282, intron 3 of 7)	17625	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
7511	chr1	33432201	33432400	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1205	NM_001385109	1912		NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2	protein-coding
68845	chr14	91290351	91291000	+	0	NA	intron (NM_001080414, intron 24 of 29)	intron (NM_001080414, intron 24 of 29)	-36795	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
80610	chr16	2960551	2961000	+	0	NA	Intergenic	Intergenic	-3500	NM_001253726	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
124935	chr2	8575151	8576100	+	0	NA	intron (NR_110257, intron 4 of 5)	intron (NR_110257, intron 4 of 5)	8167	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
193136	chr6	29553411	29554280	+	0	NA	Intergenic	CpG	5887	NM_006398	10537		NM_006398	ENSG00000213886	UBD	FAT10|UBD-3	ubiquitin D	protein-coding
5578	chr1	25989821	25990130	+	0	NA	intron (NM_000437, intron 2 of 10)	intron (NM_000437, intron 2 of 10)	8088	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
173080	chr4	6200251	6201300	+	0	NA	promoter-TSS (NM_001099433)	promoter-TSS (NM_001099433)	42	NR_037863	285484		NR_037863		JAKMIP1-DT	LINC02495	JAKMIP1 divergent transcript	ncRNA
159604	chr3	15208001	15208650	+	0	NA	intron (NR_164766, intron 1 of 18)	AluJo|SINE|Alu	2079	NM_001376089	23473		NM_014296	ENSG00000131375	CAPN7	CALPAIN7|PALBH	calpain 7	protein-coding
216484	chr8	19816321	19818730	+	0	NA	non-coding (NR_148451, exon 1 of 16)	non-coding (NR_148451, exon 1 of 16)	109	NM_018142	55174		NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
204442	chr7	3461551	3462580	+	0	NA	intron (NM_152744, intron 1 of 44)	L2|LINE|L2	160813	NM_152744	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
62081	chr13	94435601	94435980	+	0	NA	Intergenic	Intergenic	43892	NM_001922	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
121112	chr19	45970901	45971130	+	0	NA	intron (NM_002516, intron 1 of 3)	MIR|SINE|MIR	2850	NM_002516	4858		NM_002516	ENSG00000104967	NOVA2	ANOVA|NEDASB|NOVA-2|NOVA3	NOVA alternative splicing regulator 2	protein-coding
21804	chr1	207089271	207090030	+	0	NA	intron (NM_001017364, intron 1 of 5)	intron (NM_001017364, intron 1 of 5)	367	NM_001017367	725		NM_000716	ENSG00000123843	C4BPB	C4BP	complement component 4 binding protein beta	protein-coding
40772	chr11	64867621	64868430	+	0	NA	intron (NM_001282444, intron 4 of 6)	intron (NM_001282444, intron 4 of 6)	10584	NR_162101	113218486		NR_162101		MIR10392	-	microRNA 10392	ncRNA
118315	chr19	35510201	35511000	+	0	NA	promoter-TSS (NM_001126059)	promoter-TSS (NM_001126059)	-130	NM_001308383	93099		NM_033317	ENSG00000161249	DMKN	UNQ729|ZD52F10	dermokine	protein-coding
158395	chr22	50515621	50516330	+	0	NA	intron (NM_014551, intron 1 of 8)	intron (NM_014551, intron 1 of 8)	7751	NM_001185011	29781		NM_014551	ENSG00000025770	NCAPH2	CAPH2	non-SMC condensin II complex subunit H2	protein-coding
187168	chr5	140632121	140633400	+	0	NA	exon (NM_001040021, exon 3 of 3)	exon (NM_001040021, exon 3 of 3)	415	NM_000591	929		NM_000591	ENSG00000170458	CD14	-	CD14 molecule	protein-coding
233421	chr9	137599671	137599830	+	0	NA	Intergenic	(AATA)n|Simple_repeat|Simple_repeat	-5890	NM_001317968	92714		NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
214786	chr7	151121151	151121450	+	0	NA	intron (NM_001350103, intron 9 of 18)	intron (NM_001350103, intron 9 of 18)	6662	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
162446	chr3	48463801	48464000	+	0	NA	intron (NM_001271022, intron 10 of 13)	intron (NM_001271022, intron 10 of 13)	-1930	NM_007248	11277		NM_007248	ENSG00000213689	TREX1	AGS1|CRV|DRN3|HERNS|RVCLS	three prime repair exonuclease 1	protein-coding
35643	chr11	1842551	1842750	+	0	NA	TTS (NM_001145829)	TTS (NM_001145829)	2443	NM_001145841	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
143922	chr20	32672521	32673600	+	0	NA	intron (NM_182584, intron 1 of 5)	intron (NM_182584, intron 1 of 5)	881	NM_182584	284805		NM_182584	ENSG00000198547	C20orf203	-	chromosome 20 open reading frame 203	protein-coding
130717	chr2	86741821	86742480	+	0	NA	intron (NM_022780, intron 2 of 8)	intron (NM_022780, intron 2 of 8)	-21028	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
200719	chr6	137579601	137579800	+	0	NA	Intergenic	Intergenic	-85306	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
6901	chr1	31614201	31614400	+	0	NA	Intergenic	Intergenic	-3389	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
237200	chrX	108018071	108019580	+	0	NA	Intergenic	L1M2|LINE|L1	-26145	NM_001170553	340547		NM_182607	ENSG00000101842	VSIG1	1700062D20Rik|GPA34|dJ889N15.1	V-set and immunoglobulin domain containing 1	protein-coding
111385	chr19	3725071	3725450	+	0	NA	intron (NM_001267561, intron 1 of 20)	AluJo|SINE|Alu	3523	NM_001267561	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
159954	chr3	17233301	17233600	+	0	NA	intron (NM_001349090, intron 17 of 21)	intron (NM_001349090, intron 17 of 21)	300254	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
39812	chr11	62016601	62017000	+	0	NA	Intergenic	LTR13|LTR|ERVK	-49166	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
167832	chr3	133687471	133687630	+	0	NA	intron (NM_001354703, intron 1 of 22)	L1MB5|LINE|L1	25552	NM_001354703	7018		NM_001063	ENSG00000091513	TF	HEL-S-71p|PRO1557|PRO2086|TFQTL1	transferrin	protein-coding
56287	chr12	112198101	112198480	+	0	NA	intron (NM_001109662, intron 55 of 75)	L2c|LINE|L2	-34969	NR_106921	102465519		NR_106921	ENSG00000283793	MIR6861	hsa-mir-6861	microRNA 6861	ncRNA
128182	chr2	53788321	53788580	+	0	NA	intron (NM_015701, intron 1 of 13)	AluJo|SINE|Alu	1406	NM_015701	27248		NM_015701	ENSG00000068912	ERLEC1	C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB	endoplasmic reticulum lectin 1	protein-coding
102181	chr17	75148221	75148680	+	0	NA	intron (NM_001288609, intron 2 of 4)	AluJb|SINE|Alu	4843	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
213473	chr7	139034901	139035430	+	0	NA	intron (NM_080660, intron 1 of 4)	intron (NM_080660, intron 1 of 4)	877	NM_080660	92092		NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding
109197	chr19	406401	406800	+	0	NA	3' UTR (NM_001136263, exon 2 of 2)	3' UTR (NM_001136263, exon 2 of 2)	2547	NM_001136263	126567		NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium dependent domain containing 4C	protein-coding
239199	chrY	12913921	12914500	+	0	NA	intron (NR_136716, intron 7 of 14)	MER58A|DNA|hAT-Charlie	8505	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
4489	chr1	21638351	21638880	+	0	NA	intron (NM_001350524, intron 4 of 27)	L1ME4a|LINE|L1	13283	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
38408	chr11	44974051	44974450	+	0	NA	non-coding (NR_026681, exon 1 of 4)	non-coding (NR_026681, exon 1 of 4)	348	NR_026681	221122		NR_026681	ENSG00000254654	LINC02685	-	long intergenic non-protein coding RNA 2685	ncRNA
6287	chr1	27607601	27607800	+	0	NA	Intergenic	Intergenic	-3556	NM_001371928	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
40252	chr11	63679451	63679750	+	0	NA	Intergenic	Intergenic	-1850	NM_201429	10313		NM_006054	ENSG00000133318	RTN3	ASYIP|HAP|NSPL2|NSPLII|RTN3-A1	reticulon 3	protein-coding
204711	chr7	5535751	5536430	+	0	NA	Intergenic	AluY|SINE|Alu	-5489	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
138210	chr2	202693401	202693600	+	0	NA	intron (NM_173511, intron 1 of 7)	AluSz|SINE|Alu	58531	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
26523	chr10	21493821	21494080	+	0	NA	non-coding (NR_160800, exon 2 of 2)	non-coding (NR_160800, exon 2 of 2)	2691	NR_031736	100302129		NR_031736	ENSG00000222071	MIR1915	MIRN1915|hsa-mir-1915	microRNA 1915	ncRNA
126047	chr2	25402601	25402800	+	0	NA	intron (NM_183361, intron 14 of 17)	intron (NM_183361, intron 14 of 17)	-60110	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
211493	chr7	105210651	105211300	+	0	NA	intron (NM_001350741, intron 2 of 16)	MLT1E1A|LTR|ERVL-MaLR	58102	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
38160	chr11	35821801	35822320	+	0	NA	Intergenic	Intergenic	-121921	NM_001304264	143458		NM_174902	ENSG00000179241	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding
160562	chr3	30688551	30688650	+	0	NA	intron (NM_001024847, intron 7 of 7)	intron (NM_001024847, intron 7 of 7)	81999	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
84941	chr16	31344571	31345080	+	0	NA	Intergenic	Intergenic	-10351	NM_001286375	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
190782	chr6	562101	562330	+	0	NA	intron (NM_018303, intron 17 of 27)	intron (NM_018303, intron 17 of 27)	94749	NM_148959	135458		NM_148959	ENSG00000188996	HUS1B	-	HUS1 checkpoint clamp component B	protein-coding
49511	chr12	25364651	25365550	+	0	NA	Intergenic	Intergenic	-114171	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
212610	chr7	129205751	129206280	+	0	NA	intron (NM_005631, intron 4 of 11)	intron (NM_005631, intron 4 of 11)	17382	NM_005631	6608		NM_005631	ENSG00000128602	SMO	CRJS|FZD11|Gx|PHLS|SMOH	smoothened, frizzled class receptor	protein-coding
170378	chr3	184714421	184715300	+	0	NA	intron (NR_160768, intron 1 of 4)	L1ME2|LINE|L1	2617	NR_160768	107986163		NR_160768	ENSG00000272970	LOC107986163	-	uncharacterized LOC107986163	ncRNA
81976	chr16	11879021	11879680	+	0	NA	intron (NM_001130007, intron 11 of 14)	AluSg7|SINE|Alu	-27808	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
90480	chr17	1394371	1394530	+	0	NA	intron (NR_024058, intron 1 of 6)	AluJo|SINE|Alu	5772	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
106738	chr18	23529921	23530180	+	0	NA	exon (NM_001318707, exon 14 of 17)	exon (NM_001318707, exon 14 of 17)	26539	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
27889	chr10	41876551	41876950	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	491295	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
152196	chr22	20113451	20114380	+	0	NA	TTS (NR_106874)	TTS (NR_106874)	836	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
112116	chr19	5593401	5594150	+	0	NA	intron (NM_014649, intron 15 of 20)	CpG	-25741	NR_027064								
32072	chr10	101093951	101095000	+	0	NA	intron (NR_130723, intron 2 of 2)	intron (NR_130723, intron 2 of 2)	28092	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
73953	chr15	51735071	51736020	+	0	NA	intron (NM_001143917, intron 1 of 2)	intron (NM_001143917, intron 1 of 2)	1517	NM_001363969	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
91813	chr17	7051971	7052580	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-8183	NM_001370549	162515		NM_153357	ENSG00000174326	SLC16A11	MCT 11|MCT11	solute carrier family 16 member 11	protein-coding
239042	chrY	7213851	7213950	+	0	NA	Intergenic	L1MC2|LINE|L1	-60072	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
4258	chr1	19645871	19646050	+	0	NA	exon (NM_001204086, exon 1 of 4)	exon (NM_001204086, exon 1 of 4)	194	NM_001204086	4681		NM_005380	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	NBL1, DAN family BMP antagonist	protein-coding
131280	chr2	96097001	96097200	+	0	NA	Intergenic	L1MB3|LINE|L1	19471	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
141409	chr2	240918771	240919180	+	0	NA	intron (NM_001351305, intron 2 of 31)	CpG	12639	NM_001351305	728763		NM_001351305	ENSG00000226321	CROCC2	-	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding
38195	chr11	36380901	36381630	+	0	NA	intron (NM_024841, intron 2 of 9)	intron (NM_024841, intron 2 of 9)	5280	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
40434	chr11	64189271	64189880	+	0	NA	intron (NM_001282653, intron 1 of 13)	intron (NM_001282653, intron 1 of 13)	3404	NM_006819	10963		NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
124502	chr19	58581001	58581780	+	0	NA	non-coding (NR_026052, exon 2 of 2)	non-coding (NR_026052, exon 2 of 2)	5991	NR_026052	65996		NM_023939	ENSG00000293115	CENPBD2P	CENPBD1P1	CENPB DNA-binding domains containing 2, pseudogene	pseudo
217305	chr8	27388271	27388880	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	-44795	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
214264	chr7	148965351	148965980	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	2350	NR_004393	6086		NR_004393	ENSG00000252316	RNY4	HY4|Y4	RNA, Ro60-associated Y4	ncRNA
137830	chr2	200481421	200481750	+	0	NA	3' UTR (NM_015535, exon 13 of 13)	3' UTR (NM_015535, exon 13 of 13)	28483	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
215920	chr8	8232571	8233080	+	0	NA	non-coding (NR_024361, exon 3 of 9)	non-coding (NR_024361, exon 3 of 9)	4255	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
140197	chr2	231682201	231682400	+	0	NA	Intergenic	MIRc|SINE|MIR	-26225	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
236435	chrX	71530501	71531100	+	0	NA	TTS (NR_104396)	TTS (NR_104396)	-2304	NM_181673	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
63545	chr14	20008151	20008250	+	0	NA	Intergenic	(GAGG)n|Simple_repeat|Simple_repeat	6138	NR_145508	390432		NM_001348271		OR4Q2	OR4Q2P	olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene)	protein-coding
221960	chr8	129970251	129970550	+	0	NA	intron (NM_001353279, intron 2 of 13)	intron (NM_001353279, intron 2 of 13)	-30589	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
155139	chr22	37655321	37655950	+	0	NA	exon (NM_018957, exon 18 of 18)	exon (NM_018957, exon 18 of 18)	2742	NR_109952	101927051		NR_109952	ENSG00000233360	PDXP-DT	-	PDXP divergent transcript	ncRNA
86343	chr16	66483521	66484350	+	0	NA	intron (NM_001197225, intron 4 of 4)	intron (NM_001197225, intron 4 of 4)	-7533	NR_109960	101927726		NR_109960	ENSG00000261656	BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
15632	chr1	150635071	150635230	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-5528	NM_207168	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
84778	chr16	31001421	31001680	+	0	NA	exon (NM_052874, exon 2 of 10)	exon (NM_052874, exon 2 of 10)	9088	NM_052874	112755		NM_052874	ENSG00000099365	STX1B	GEFSP9|STX1B1|STX1B2	syntaxin 1B	protein-coding
54833	chr12	94943251	94944300	+	0	NA	Intergenic	L2a|LINE|L2	59922	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
122759	chr19	50127201	50127400	+	0	NA	Intergenic	AluSx1|SINE|Alu	1222	NR_024214	100169951		NR_024214		SNAR-A3	-	small NF90 (ILF3) associated RNA A3	snRNA
80041	chr16	1956101	1956600	+	0	NA	Intergenic	AluJo|SINE|Alu	-1661	NM_005061	6123		NM_005061	ENSG00000140986	RPL3L	CMD2D	ribosomal protein L3 like	protein-coding
160475	chr3	30598871	30599430	+	0	NA	Intergenic	MIR|SINE|MIR	-7352	NM_001024847	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
114067	chr19	11088951	11089700	+	0	NA	promoter-TSS (NM_001195798)	promoter-TSS (NM_001195798)	-138	NM_001195799	3949		NM_000527	ENSG00000130164	LDLR	FH|FHC|FHCL1|LDLCQ2	low density lipoprotein receptor	protein-coding
208333	chr7	66212501	66213300	+	0	NA	intron (NM_003596, intron 1 of 5)	L1MDa|LINE|L1	7566	NM_003596	8460		NM_003596	ENSG00000169902	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
178148	chr4	142315951	142316250	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	-10156	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
131334	chr2	96143811	96144500	+	0	NA	exon (NM_004418, exon 3 of 4)	exon (NM_004418, exon 3 of 4)	1285	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
226244	chr9	66713671	66713830	+	0	NA	Intergenic	AluJb|SINE|Alu	-186975	NM_033160	26149		NM_033160	ENSG00000274349	ZNF658	-	zinc finger protein 658	protein-coding
89214	chr16	88618871	88619030	+	0	NA	intron (NM_144604, intron 8 of 17)	intron (NM_144604, intron 8 of 17)	-19622	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
139949	chr2	230849571	230850550	+	0	NA	Intergenic	L2a|LINE|L2	-14125	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
187072	chr5	140156851	140158050	+	0	NA	intron (NR_130738, intron 1 of 4)	intron (NR_130738, intron 1 of 4)	131	NR_130738	101929719		NR_130738	ENSG00000254363	LOC101929719	-	uncharacterized LOC101929719	ncRNA
131001	chr2	87809371	87810230	+	0	NA	intron (NM_001382344, intron 6 of 22).2	intron (NM_001382344, intron 6 of 22).2	15967	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
209947	chr7	92631371	92632200	+	0	NA	intron (NM_001145306, intron 5 of 7)	intron (NM_001145306, intron 5 of 7)	-41395	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
58203	chr12	126767471	126767630	+	0	NA	intron (NR_033878, intron 1 of 4)	LTR28|LTR|ERV1	4712	NR_033878	387895		NR_033878		LINC00944	DMDRMR	long intergenic non-protein coding RNA 944	ncRNA
33097	chr10	110916521	110917100	+	0	NA	intron (NM_001195304, intron 2 of 4)	intron (NM_001195304, intron 2 of 4)	2126	NM_001195306	92482		NM_001195304	ENSG00000214413	BBIP1	BBIP10|BBS18|NCRNA00081|bA348N5.3	BBSome interacting protein 1	protein-coding
55226	chr12	101823651	101824980	+	0	NA	intron (NM_024312, intron 1 of 20)	MLT1K|LTR|ERVL-MaLR	6644	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
134681	chr2	144478171	144478530	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-41264	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
177952	chr4	139012701	139012900	+	0	NA	promoter-TSS (NR_133945)	promoter-TSS (NR_133945)	-154	NR_133945	105377448		NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
23412	chr1	228279421	228280380	+	0	NA	exon (NM_001098623, exon 28 of 105)	exon (NM_001098623, exon 28 of 105)	-66236	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
146386	chr20	49287871	49288450	+	0	NA	intron (NR_003604, intron 4 of 4)	intron (NR_003604, intron 4 of 4)	7477	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
120755	chr19	45409221	45409630	+	0	NA	exon (NM_012099, exon 3 of 3)	exon (NM_012099, exon 3 of 3)	2781	NM_012099	10849		NM_012099	ENSG00000117877	POLR1G	ASE-1|ASE1|CAST|CD3EAP|PAF49|RPA34	RNA polymerase I subunit G	protein-coding
112733	chr19	7346571	7347680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1812	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
82427	chr16	16311551	16311650	+	0	NA	Intergenic	Intergenic	1721	NR_036142	100422956		NR_036142	ENSG00000265373	MIR3180-2	mir-3180-2	microRNA 3180-2	ncRNA
223580	chr8	144273851	144273950	+	0	NA	intron (NM_015201, intron 3 of 15)	intron (NM_015201, intron 3 of 15)	7447	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
238380	chrX	149942121	149942800	+	0	NA	intron (NR_027456, intron 4 of 11)	intron (NR_027456, intron 4 of 11)	3912	NR_027456	100272228		NR_027456	ENSG00000235703	EOLA2-DT	LINC00894	EOLA2 divergent transcript	ncRNA
162479	chr3	48556201	48557700	+	0	NA	promoter-TSS (NM_001317138)	promoter-TSS (NM_001317138)	-147	NM_001317134	5210		NM_004567	ENSG00000114268	PFKFB4	-	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding
237814	chrX	129956801	129958000	+	0	NA	Intergenic	CpG	-23579	NM_001184772	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
52067	chr12	54035621	54036130	+	0	NA	TTS (NR_003084)	TTS (NR_003084)	1925	NR_030753	693200		NR_030753	ENSG00000207571	MIR615	MIRN615|hsa-mir-615|mir-615	microRNA 615	ncRNA
181925	chr5	54867121	54867700	+	0	NA	Intergenic	Intergenic	118183	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
140222	chr2	231721201	231722400	+	0	NA	Intergenic	Intergenic	8486	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
113557	chr19	10248521	10248780	+	0	NA	Intergenic	AluSx|SINE|Alu	-3314	NM_146387	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
177602	chr4	121001001	121001400	+	0	NA	Intergenic	L1P2|LINE|L1	71335	NM_024574	79625		NM_024574	ENSG00000173376	NDNF	C4orf31|HH25|NORD	neuron derived neurotrophic factor	protein-coding
42503	chr11	70267671	70267830	+	0	NA	Intergenic	L2c|LINE|L2	-2940	NM_001378006	8500		NM_003626	ENSG00000131626	PPFIA1	LIP.1|LIP1|LIPRIN	PTPRF interacting protein alpha 1	protein-coding
70367	chr14	101887251	101888050	+	0	NA	intron (NM_178587, intron 5 of 11)	MLT1H|LTR|ERVL-MaLR	-76923	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
41535	chr11	66282001	66283180	+	0	NA	intron (NR_073078, intron 2 of 5)	CpG	4415	NR_073079	254263		NM_182553	ENSG00000174871	CNIH2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding
66261	chr14	61362451	61362550	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	41057	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
229774	chr9	125226101	125226500	+	0	NA	intron (NM_001174153, intron 5 of 7)	AluSx1|SINE|Alu	15043	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
231310	chr9	130058051	130058600	+	0	NA	intron (NM_001136557, intron 1 of 19)	L1MB7|LINE|L1	4419	NM_001136557	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
138037	chr2	201340351	201340450	+	0	NA	intron (NR_110620, intron 6 of 13)	L1M1|LINE|L1	16945	NM_001127391	130540		NM_139163	ENSG00000155749	FLACC1	ALS2CR12	flagellum associated containing coiled-coil domains 1	protein-coding
208039	chr7	55950401	55950800	+	0	NA	Intergenic	AluY|SINE|Alu	-1277	NM_015969	51373		NM_015969	ENSG00000239789	MRPS17	HSPC011|MRP-S17|RPMS17|S17mt|uS17m	mitochondrial ribosomal protein S17	protein-coding
223669	chr8	144394221	144394480	+	0	NA	promoter-TSS (NR_030635)	promoter-TSS (NR_030635)	-120	NR_030635	100126351		NR_030635	ENSG00000284310	MIR939	MIRN939|hsa-mir-939|mir-939	microRNA 939	ncRNA
110863	chr19	2616501	2617600	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-13665	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
192356	chr6	24580851	24581430	+	0	NA	intron (NM_001350406, intron 5 of 19)	intron (NM_001350406, intron 5 of 19)	2087	NM_001252328	9856		NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
107883	chr18	56646301	56646500	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-4959	NM_015285	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
165877	chr3	106121951	106122050	+	0	NA	Intergenic	Intergenic	-252599	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
153451	chr22	25172251	25172450	+	0	NA	intron (NM_001145206, intron 5 of 10)	intron (NM_001145206, intron 5 of 10)	-27508	NM_004076	1417		NM_004076	ENSG00000100053	CRYBB3	CATCN2|CRYB3|CTRCT22	crystallin beta B3	protein-coding
33129	chr10	112368351	112368450	+	0	NA	Intergenic	AluSx|SINE|Alu	-5716	NM_203379	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
78344	chr15	91049751	91050300	+	0	NA	Intergenic	Intergenic	27403	NR_110104	101926911		NR_110104	ENSG00000214432	VPS33B-DT	-	VPS33B divergent transcript	ncRNA
57824	chr12	123228721	123229780	+	0	NA	intron (NR_103517, intron 2 of 23)	intron (NR_103517, intron 2 of 23)	3891	NM_022782	10198		NM_022782	ENSG00000051825	MPHOSPH9	MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding
93416	chr17	18392051	18392150	+	0	NA	Intergenic	Intergenic	14322	NM_001145127	645027		NM_001145127	ENSG00000214860	EVPLL	-	envoplakin like	protein-coding
46848	chr11	133834271	133834630	+	0	NA	Intergenic	Intergenic	11063	NM_174927	219938		NM_174927	ENSG00000166118	SPATA19	CT132|SPAS1|spergen1	spermatogenesis associated 19	protein-coding
112634	chr19	6789201	6789400	+	0	NA	intron (NM_005428, intron 1 of 26)	AluY|SINE|Alu	16592	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
147095	chr20	53857751	53858050	+	0	NA	Intergenic	Intergenic	17809	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
126229	chr2	27035171	27035650	+	0	NA	intron (NM_001083590, intron 3 of 15)	intron (NM_001083590, intron 3 of 15)	2445	NM_001083590	54867		NM_017727	ENSG00000119777	TMEM214	-	transmembrane protein 214	protein-coding
104185	chr17	80426601	80427900	+	0	NA	intron (NR_148043, intron 5 of 5)	intron (NR_148043, intron 5 of 5)	7832	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
67238	chr14	68966421	68966680	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	12752	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
37107	chr11	13286921	13287750	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	9545	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
101233	chr17	66191471	66192850	+	0	NA	promoter-TSS (NM_001199165)	promoter-TSS (NM_001199165)	-27	NM_001199165	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
152168	chr22	20081771	20081930	+	0	NA	intron (NM_022720, intron 1 of 13)	L2a|LINE|L2	1609	NM_022720	54487		NM_022720	ENSG00000128191	DGCR8	C22orf12|DGCRK6|Gy1|pasha	DGCR8 microprocessor complex subunit	protein-coding
70678	chr14	103089371	103090200	+	0	NA	exon (NM_001330236, exon 4 of 4)	exon (NM_001330236, exon 4 of 4)	5575	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
238234	chrX	140765901	140766100	+	0	NA	intron (NR_104228, intron 3 of 3)	intron (NR_104228, intron 3 of 3)	18558	NM_004065	1038		NM_004065		CDR1	CDR|CDR34|CDR62A	cerebellar degeneration related 1	unknown
170901	chr3	193970221	193970480	+	0	NA	intron (NR_033944, intron 1 of 2)	intron (NR_033944, intron 1 of 2)	23888	NR_027764	100128023		NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
139588	chr2	224973451	224974050	+	0	NA	intron (NM_014689, intron 1 of 55)	MIR|SINE|MIR	8677	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
2297	chr1	8969551	8970300	+	0	NA	intron (NM_001270502, intron 4 of 5)	L1MEd|LINE|L1	24057	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
89722	chr16	89420421	89421180	+	0	NA	intron (NR_045839, intron 1 of 9)	AluJb|SINE|Alu	-10118	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109222	chr19	486271	486630	+	0	NA	intron (NM_001385599, intron 2 of 4)	AluSx1|SINE|Alu	5174	NM_001385599	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
66592	chr14	63524351	63525180	+	0	NA	intron (NM_006246, intron 2 of 13)	intron (NM_006246, intron 2 of 13)	-16527	NM_001282182	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
31384	chr10	94403521	94404030	+	0	NA	intron (NM_015188, intron 1 of 12)	intron (NM_015188, intron 1 of 12)	1234	NM_015188	23232		NM_015188	ENSG00000108239	TBC1D12	-	TBC1 domain family member 12	protein-coding
108932	chr18	79468171	79468330	+	0	NA	3' UTR (NM_001278675, exon 8 of 8)	3' UTR (NM_001278675, exon 8 of 8)	67951	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
122931	chr19	50670401	50670600	+	0	NA	intron (NM_016148, intron 22 of 23)	L2a|LINE|L2	21055	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
46141	chr11	123046251	123046350	+	0	NA	Intergenic	AluSx|SINE|Alu	11856	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
184090	chr5	93599251	93599650	+	0	NA	Intergenic	Intergenic	16228	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
229673	chr9	124450301	124450780	+	0	NA	Intergenic	CpG	-35098	NM_002799	5695		NM_002799	ENSG00000136930	PSMB7	-	proteasome 20S subunit beta 7	protein-coding
94553	chr17	29596221	29596480	+	0	NA	intron (NM_152345, intron 1 of 14)	intron (NM_152345, intron 1 of 14)	3218	NM_152345	124930		NM_152345	ENSG00000198720	ANKRD13B	-	ankyrin repeat domain 13B	protein-coding
5828	chr1	26694901	26696500	+	0	NA	promoter-TSS (NM_006015)	promoter-TSS (NM_006015)	-315	NM_139135	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
17563	chr1	156813551	156814600	+	0	NA	intron (NM_001161444, intron 4 of 7)	CpG-1853	-1675	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
29508	chr10	70614001	70614400	+	0	NA	Intergenic	L1MEd|LINE|L1	-11412	NM_005041	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
207515	chr7	44801771	44802200	+	0	NA	3' UTR (NM_001300981, exon 6 of 6)	3' UTR (NM_001300981, exon 6 of 6)	5304	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
67989	chr14	74922771	74923830	+	0	NA	promoter-TSS (NM_031464)	promoter-TSS (NM_031464)	-40	NR_163405	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
221648	chr8	125935601	125936000	+	0	NA	intron (NR_038447, intron 3 of 3)	intron (NR_038447, intron 3 of 3)	15397	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
143450	chr20	30373101	30373500	+	0	NA	Intergenic	L1PA16|LINE|L1	-3864	NR_003579	284802		NM_207350		FRG1BP	C20orf80|FRG1B|bA348I14.2	FSHD region gene 1 family member B, pseudogene	pseudo
185804	chr5	132430751	132431180	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	20036	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
170651	chr3	187130451	187131830	+	0	NA	intron (NM_052969, intron 1 of 2)	intron (NM_052969, intron 1 of 2)	8356	NM_052969	116832		NM_052969	ENSG00000163923	RPL39L	L39-2|RPL39L1	ribosomal protein L39 like	protein-coding
228445	chr9	99834551	99834900	+	0	NA	TTS (NM_173199)	TTS (NM_173199)	12840	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
3946	chr1	18602921	18603180	+	0	NA	Intergenic	Intergenic	-27796	NM_002584	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
94684	chr17	30601241	30601500	+	0	NA	intron (NR_015341, intron 2 of 8)	CpG	-22948	NR_033420	6459		NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2	pseudo
149549	chr21	33116471	33116850	+	0	NA	intron (NR_109961, intron 1 of 2)	intron (NR_109961, intron 1 of 2)	7040	NR_109961	101928107		NR_109961	ENSG00000226527	LOC101928107	-	uncharacterized LOC101928107	ncRNA
87086	chr16	68467521	68467980	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-19242	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
68051	chr14	75245901	75246100	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-32828	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
34057	chr10	124749021	124749350	+	0	NA	Intergenic	Intergenic	-4807	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
88162	chr16	81700651	81700950	+	0	NA	intron (NM_030629, intron 15 of 20)	L2b|LINE|L2	35446	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
76391	chr15	74623201	74623600	+	0	NA	intron (NM_001130028, intron 5 of 12)	intron (NM_001130028, intron 5 of 12)	7564	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
55245	chr12	101909471	101909830	+	0	NA	intron (NM_018370, intron 4 of 6)	intron (NM_018370, intron 4 of 6)	32070	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
60297	chr13	40637471	40638030	+	0	NA	intron (NM_002015, intron 1 of 2)	MIR|SINE|MIR	28891	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
70093	chr14	100194821	100195350	+	0	NA	Intergenic	HAL1|LINE|L1	-35440	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
154969	chr22	37279221	37279880	+	0	NA	Intergenic	Intergenic	-2958	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
175207	chr4	56655701	56656100	+	0	NA	exon (NM_032495, exon 3 of 4)	exon (NM_032495, exon 3 of 4)	622	NM_139211	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
117996	chr19	33796001	33796430	+	0	NA	promoter-TSS (NM_001129994)	promoter-TSS (NM_001129994)	-655	NM_001129995	79047		NM_024076	ENSG00000153885	KCTD15	-	potassium channel tetramerization domain containing 15	protein-coding
157916	chr22	49775801	49776780	+	0	NA	intron (NR_146335, intron 11 of 13)	intron (NR_146335, intron 11 of 13)	48041	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
82070	chr16	14069901	14070130	+	0	NA	Intergenic	Intergenic	-1047	NM_001365420	57496		NM_014048	ENSG00000186260	MRTFB	MKL2|MRTF-B|NPD001	myocardin related transcription factor B	protein-coding
209112	chr7	74955201	74955600	+	0	NA	Intergenic	Intergenic	-9305	NM_001145064	729438		NM_001145064	ENSG00000274070	CASTOR2	GATSL1|GATSL2	cytosolic arginine sensor for mTORC1 subunit 2	protein-coding
163520	chr3	51486321	51486580	+	0	NA	intron (NR_146065, intron 1 of 25)	AluJr|SINE|Alu	13552	NM_001171904	9730		NM_014703	ENSG00000145041	DCAF1	RIP|VPRBP	DDB1 and CUL4 associated factor 1	protein-coding
48194	chr12	8036921	8037680	+	0	NA	intron (NM_018416, intron 1 of 10)	intron (NM_018416, intron 1 of 10)	4584	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
52393	chr12	55728241	55730900	+	0	NA	promoter-TSS (NM_001780)	promoter-TSS (NM_001780)	103	NM_001257389	967		NM_001780	ENSG00000135404	CD63	AD1|HOP-26|ME491|MLA1|OMA81H|Pltgp40|TSPAN30	CD63 molecule	protein-coding
86476	chr16	66973501	66973700	+	0	NA	3' UTR (NM_024922, exon 13 of 13)	3' UTR (NM_024922, exon 13 of 13)	6125	NM_001185176	23491		NM_012122	ENSG00000172828	CES3	ES31	carboxylesterase 3	protein-coding
87273	chr16	70011301	70011880	+	0	NA	intron (NR_003610, intron 15 of 25)	intron (NR_003610, intron 15 of 25)	-18756	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
44630	chr11	109177701	109177930	+	0	NA	Intergenic	L1HS|LINE|L1	-244375	NM_207645	399947		NM_207645	ENSG00000185742	C11orf87	LOH11CR1A|NEURIM1	chromosome 11 open reading frame 87	protein-coding
198738	chr6	108541951	108542850	+	0	NA	Intergenic	Intergenic	-17425	NM_201559	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
15618	chr1	150619771	150620330	+	0	NA	Intergenic	Intergenic	9083	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
166013	chr3	108221751	108223060	+	0	NA	promoter-TSS (NM_018010)	promoter-TSS (NM_018010)	19	NM_018010	55081		NM_018010	ENSG00000114446	IFT57	ESRRBL1|HIPPI|MHS4R2|OFD18	intraflagellar transport 57	protein-coding
226119	chr9	62913771	62914130	+	0	NA	Intergenic	Intergenic	-15863	NR_122076	403323		NM_203449		LERFS	-	lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting	ncRNA
89458	chr16	89025821	89026580	+	0	NA	Intergenic	Intergenic	-48993	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
223177	chr8	143556351	143556980	+	0	NA	TTS (NR_147504)	TTS (NR_147504)	1606	NR_147504	100310756		NR_147504	ENSG00000289161	LOC100310756	-	uncharacterized LOC100310756	ncRNA
56659	chr12	119875801	119876000	+	0	NA	intron (NM_007174, intron 2 of 46)	AluSx1|SINE|Alu	1420	NM_001206999	11113		NM_007174	ENSG00000122966	CIT	CITK|CRIK|MCPH17|STK21	citron rho-interacting serine/threonine kinase	protein-coding
67724	chr14	73492771	73493250	+	0	NA	3' UTR (NM_024644, exon 1 of 1)	3' UTR (NM_024644, exon 1 of 1)	2077	NM_024644	79697		NM_024644	ENSG00000170468	RIOX1	C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66	ribosomal oxygenase 1	protein-coding
30435	chr10	79054101	79054300	+	0	NA	intron (NR_024429, intron 3 of 7)	L2b|LINE|L2	13248	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
63526	chr13	114338651	114338750	+	0	NA	Intergenic	Intergenic	-4752	NR_126391	104355150		NR_126391		LINC01054	-	long intergenic non-protein coding RNA 1054	ncRNA
230547	chr9	128409721	128410780	+	0	NA	intron (NR_031672, intron 2 of 2).4	MIR1_Amn|SINE|MIR	-8910	NM_001286760	51148		NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
100549	chr17	62592801	62593000	+	0	NA	intron (NM_001375269, intron 15 of 20)	MER1A|DNA|hAT-Charlie	-34770	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
21200	chr1	203990251	203990550	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	50864	NR_027902	284573		NR_027902	ENSG00000176754	LINC00303	C1orf157|NCRNA00303	long intergenic non-protein coding RNA 303	ncRNA
232829	chr9	136735271	136735430	+	0	NA	Intergenic	Intergenic	-7166	NR_024543	84973		NM_032887	ENSG00000233016	SNHG7	NCRNA00061	small nucleolar RNA host gene 7	ncRNA
102827	chr17	76463651	76463750	+	0	NA	intron (NM_001166579, intron 3 of 6)	intron (NM_001166579, intron 3 of 6)	-3903	NM_001088	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
224401	chr9	14348671	14348830	+	0	NA	intron (NM_001369468, intron 1 of 8)	CpG	-26363	NM_001369466	4781		NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
30957	chr10	87816071	87817050	+	0	NA	intron (NR_135914, intron 1 of 10)	intron (NR_135914, intron 1 of 10)	1671	NM_001321968	84896		NM_032810	ENSG00000138138	ATAD1	AFDC1|FNP001|HKPX4|Msp1|THORASE|hATAD1	ATPase family AAA domain containing 1	protein-coding
214454	chr7	150320851	150321150	+	0	NA	intron (NM_001363434, intron 1 of 2)	MER31B|LTR|ERV1	-1661	NM_001363433	65999		NM_023942	ENSG00000127399	LRRC61	HSPC295	leucine rich repeat containing 61	protein-coding
74993	chr15	63933651	63933750	+	0	NA	intron (NR_120344, intron 3 of 3)	AluJr|SINE|Alu	5426	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
159826	chr3	16457101	16457500	+	0	NA	intron (NM_015150, intron 2 of 9)	MIR|SINE|MIR	56399	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
197091	chr6	56953671	56953830	+	0	NA	intron (NM_001374736, intron 2 of 103)	intron (NM_001374736, intron 2 of 103)	1080	NM_001374722	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
74822	chr15	63484621	63485050	+	0	NA	Intergenic	Intergenic	-19676	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
187859	chr5	147803121	147803380	+	0	NA	Intergenic	THE1A|LTR|ERVL-MaLR	-20522	NM_001270941	9832		NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
117640	chr19	23688551	23688980	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-1553	NM_138330	171392		NM_138330	ENSG00000197372	ZNF675	TBZF|TIZ	zinc finger protein 675	protein-coding
105429	chr17	82884351	82885400	+	0	NA	intron (NM_005993, intron 15 of 38)	intron (NM_005993, intron 15 of 38)	-44853	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
169067	chr3	153312921	153313380	+	0	NA	Intergenic	Intergenic	150924	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
27035	chr10	26881901	26882380	+	0	NA	Intergenic	Intergenic	-21053	NM_001178124	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
235427	chrX	45800951	45802000	+	0	NA	Intergenic	L1MD3|LINE|L1	50015	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
217146	chr8	26043251	26043550	+	0	NA	intron (NM_022659, intron 1 of 15)	CpG	2013	NM_022659	64641		NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	EBF transcription factor 2	protein-coding
13421	chr1	114153701	114154350	+	0	NA	promoter-TSS (NM_001270805)	promoter-TSS (NM_001270805)	-156	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
4385	chr1	20783151	20784130	+	0	NA	intron (NR_164850, intron 1 of 12)	intron (NR_164850, intron 1 of 12)	3012	NM_001376789	50809		NM_016287	ENSG00000127483	HP1BP3	HP1-BP74|HP1BP74	heterochromatin protein 1 binding protein 3	protein-coding
4233	chr1	19483051	19483800	+	0	NA	intron (NM_001206541, intron 1 of 8)	MIRb|SINE|MIR	870	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
168406	chr3	142237901	142238100	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	-12415	NM_001039547	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
216756	chr8	22471171	22471330	+	0	NA	intron (NM_005605, intron 1 of 13)	intron (NM_005605, intron 1 of 13)	30172	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
102545	chr17	75836771	75837230	+	0	NA	intron (NM_199242, intron 12 of 31)	intron (NM_199242, intron 12 of 31)	7404	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
143260	chr20	25081921	25082580	+	0	NA	promoter-TSS (NM_001256271)	promoter-TSS (NM_001256271)	-109	NM_001256271	30813		NM_014588	ENSG00000100987	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
103794	chr17	79042101	79042730	+	0	NA	intron (NM_198593, intron 1 of 3)	intron (NM_198593, intron 1 of 3)	8116	NM_198593	114897		NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and TNF related 1	protein-coding
176689	chr4	100935251	100935350	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-260187	NR_046811	100874275		NR_046811	ENSG00000250223	LINC01216	EMCN-IT3	long intergenic non-protein coding RNA 1216	ncRNA
230825	chr9	129060851	129060950	+	0	NA	intron (NR_138422, intron 8 of 13)	intron (NR_138422, intron 8 of 13)	-20211	NM_020438	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
149988	chr21	36860121	36860430	+	0	NA	intron (NR_148020, intron 6 of 10)	MIR|SINE|MIR	102083	NM_001352518	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
14988	chr1	148060451	148061900	+	0	NA	intron (NR_146087, intron 1 of 7)	AluY|SINE|Alu	11873	NR_146087	728920		NR_146087		PDE4DIPP1	PDE4DIP1	PDE4DIP pseudogene 1	pseudo
18809	chr1	167640801	167641280	+	0	NA	intron (NR_136519, intron 2 of 2)	intron (NR_136519, intron 2 of 2)	10808	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
93593	chr17	19128601	19129130	+	0	NA	intron (NM_001129778, intron 1 of 3)	intron (NM_001129778, intron 1 of 3)	1276	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
201726	chr6	149787771	149787930	+	0	NA	intron (NM_001252050, intron 3 of 6)	(TG)n|Simple_repeat|Simple_repeat	38109	NM_001360456	5110		NM_005389	ENSG00000120265	PCMT1	PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase	protein-coding
95914	chr17	38907551	38908330	+	0	NA	intron (NM_006148, intron 4 of 6)	MIR3|SINE|MIR	-7039	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
183304	chr5	76601471	76602000	+	0	NA	intron (NM_006633, intron 11 of 35)	intron (NM_006633, intron 11 of 35)	7234	NR_134278	101929109		NR_134278	ENSG00000249713	LOC101929109	-	uncharacterized LOC101929109	ncRNA
179763	chr5	269801	270050	+	0	NA	non-coding (NR_104613, exon 2 of 2)	non-coding (NR_104613, exon 2 of 2)	1599	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
176560	chr4	98603701	98604480	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	54521	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
64733	chr14	34539201	34540250	+	0	NA	promoter-TSS (NM_018453)	promoter-TSS (NM_018453)	12	NM_001318916	55837		NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding
129803	chr2	71449401	71449880	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-3921	NM_001130979	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
104325	chr17	80951971	80952130	+	0	NA	intron (NM_020761, intron 28 of 33)	intron (NM_020761, intron 28 of 33)	19163	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
67212	chr14	68937801	68938400	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	41202	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
153261	chr22	24132101	24132300	+	0	NA	intron (NM_012295, intron 28 of 36)	intron (NM_012295, intron 28 of 36)	-49287	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
182662	chr5	67211271	67211650	+	0	NA	Intergenic	AluY|SINE|Alu	-14661	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
183031	chr5	73215721	73216400	+	0	NA	Intergenic	CpG	-14099	NR_134291	340090		NR_134291	ENSG00000287090	LOC340090	-	uncharacterized LOC340090	ncRNA
14239	chr1	143232101	143233450	+	0	NA	Intergenic	Intergenic	189817	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
31534	chr10	96877251	96877980	+	0	NA	intron (NM_032440, intron 2 of 7)	AluY|SINE|Alu	44670	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
161891	chr3	45949451	45949750	+	0	NA	intron (NM_024513, intron 14 of 17)	intron (NM_024513, intron 14 of 17)	6136	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
33363	chr10	117226971	117227130	+	0	NA	Intergenic	Intergenic	-14064	NM_003054	6571		NM_003054	ENSG00000165646	SLC18A2	PKDYS2|SVAT|SVMT|VAT2|VMAT2	solute carrier family 18 member A2	protein-coding
79171	chr16	294871	295450	+	0	NA	intron (NM_181050, intron 7 of 9)	AluSq2|SINE|Alu	11996	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
205444	chr7	17029121	17029780	+	0	NA	Intergenic	Intergenic	-147467	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
117968	chr19	33301771	33303650	+	0	NA	promoter-TSS (NR_026887)	promoter-TSS (NR_026887)	-111	NR_026887	80054		NR_026887	ENSG00000267296	CEBPA-DT	ADINR|CEBPA-AS1	CEBPA divergent transcript	ncRNA
10088	chr1	58885071	58885480	+	0	NA	intron (NR_108106, intron 1 of 1)	MIR|SINE|MIR	100124	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
11786	chr1	92489301	92489600	+	0	NA	Intergenic	MIRb|SINE|MIR	-2525	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
103693	chr17	78810871	78811350	+	0	NA	intron (NR_169585, intron 13 of 19)	AluSx1|SINE|Alu	-28768	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
100988	chr17	64613801	64614400	+	0	NA	intron (NM_022739, intron 1 of 18)	MER1A|DNA|hAT-Charlie	48207	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
196932	chr6	52416221	52417180	+	0	NA	Intergenic	Intergenic	-3642	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
212226	chr7	120987601	120988090	+	0	NA	promoter-TSS (NM_024913)	promoter-TSS (NM_024913)	-866	NM_024913	79974		NM_024913	ENSG00000106034	CPED1	C7orf58	cadherin like and PC-esterase domain containing 1	protein-coding
39720	chr11	61772451	61773250	+	0	NA	intron (NM_013279, intron 7 of 25)	intron (NM_013279, intron 7 of 25)	-15186	NR_026882	26070		NR_026882	ENSG00000124915	MYRF-AS1	DKFZP434K028	MYRF antisense RNA 1	ncRNA
163377	chr3	50486951	50487250	+	0	NA	intron (NM_001291101, intron 1 of 37)	MIRc|SINE|MIR	16534	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
200524	chr6	136227601	136227800	+	0	NA	Intergenic	Intergenic	22611	NM_001318738	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
65071	chr14	39420521	39420780	+	0	NA	intron (NM_203301, intron 1 of 3)	AluY|SINE|Alu	11850	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
41385	chr11	66001621	66003350	+	0	NA	promoter-TSS (NM_001242486)	promoter-TSS (NM_001242486)	-18	NM_003860	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
61079	chr13	48346601	48346800	+	0	NA	intron (NM_000321, intron 4 of 26)	L1ME4a|LINE|L1	42949	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
166319	chr3	112740701	112741400	+	0	NA	intron (NR_110017, intron 2 of 4)	intron (NR_110017, intron 2 of 4)	3961	NR_162092	113218483		NR_162092		MIR9900	-	microRNA 9900	ncRNA
132844	chr2	110811721	110812200	+	0	NA	intron (NM_001371254, intron 9 of 18)	intron (NM_001371254, intron 9 of 18)	79387	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
23438	chr1	228413351	228413930	+	0	NA	intron (NM_001134855, intron 3 of 5)	MER34C2|LTR|ERV1	3221	NM_016102	51127		NM_016102	ENSG00000162931	TRIM17	RBCC|RNF16|terf	tripartite motif containing 17	protein-coding
79878	chr16	1531471	1531830	+	0	NA	intron (NM_001256541, intron 1 of 3)	intron (NM_001256541, intron 1 of 3)	-2016	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
46557	chr11	128486301	128486500	+	0	NA	intron (NM_001143820, intron 5 of 9)	intron (NM_001143820, intron 5 of 9)	35910	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
146126	chr20	48626451	48628180	+	0	NA	intron (NM_020820, intron 39 of 39)	intron (NM_020820, intron 39 of 39)	200684	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
2856	chr1	11280971	11281680	+	0	NA	intron (NM_001330350, intron 1 of 1)	L2a|LINE|L2	8127	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
176717	chr4	101282201	101282830	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	-41643	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
138626	chr2	210019871	210020430	+	0	NA	3' UTR (NM_001318931, exon 6 of 6)	3' UTR (NM_001318931, exon 6 of 6)	-9772	NR_110291	101928020		NR_110291		KANSL1L-AS1	-	KANSL1L antisense RNA 1	ncRNA
76856	chr15	77901871	77902030	+	0	NA	Intergenic	MIRb|SINE|MIR	24896	NR_027024	645752		NR_027024		GOLGA6FP	-	golgin A6 family member F, pseudogene	pseudo
179664	chr4	189942421	189942680	+	0	NA	intron (NM_004477, intron 1 of 8)	L1MB7|LINE|L1	1678	NM_004477	2483		NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
238120	chrX	136652801	136653400	+	0	NA	intron (NM_000074, intron 2 of 4)	intron (NM_000074, intron 2 of 4)	4942	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
173779	chr4	17578321	17579280	+	0	NA	intron (NM_015907, intron 1 of 12)	intron (NM_015907, intron 1 of 12)	1602	NM_015907	51056		NM_015907	ENSG00000002549	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
5277	chr1	25088121	25088400	+	0	NA	Intergenic	Intergenic	64757	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
17527	chr1	156774771	156775180	+	0	NA	intron (NM_005973, intron 1 of 6)	AluY|SINE|Alu	7440	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
203318	chr6	170159251	170159550	+	0	NA	Intergenic	Intergenic	-1242	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
72018	chr15	28098221	28098480	+	0	NA	intron (NM_000275, intron 1 of 23)	intron (NM_000275, intron 1 of 23)	965	NM_000275	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
66404	chr14	61505951	61506800	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	63819	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
50582	chr12	48352271	48352530	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-1154	NM_001172682	121274		NM_152320	ENSG00000167528	ZNF641	-	zinc finger protein 641	protein-coding
136378	chr2	176111921	176112180	+	0	NA	Intergenic	Intergenic	-4728	NM_002148	3236		NM_002148	ENSG00000128710	HOXD10	HOX4|HOX4D|HOX4E|Hox-4.4	homeobox D10	protein-coding
237448	chrX	119688791	119689450	+	0	NA	intron (NM_145799, intron 1 of 10)	intron (NM_145799, intron 1 of 10)	4048	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
171799	chr4	500901	501630	+	0	NA	intron (NM_001289055, intron 3 of 8)	L2a|LINE|L2	2055	NM_001345989	54872		NM_017733	ENSG00000174227	PIGG	EMM|GPI7|LAS21|MRT53|NEDHSCA|PRO4405|RLGS1930	phosphatidylinositol glycan anchor biosynthesis class G (EMM blood group)	protein-coding
144356	chr20	35024721	35025180	+	0	NA	intron (NM_015638, intron 8 of 18)	L1MB8|LINE|L1	-34478	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
161397	chr3	41213921	41214500	+	0	NA	intron (NM_001098210, intron 1 of 15)	MER5A|DNA|hAT-Charlie	14705	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
186025	chr5	133999321	133999700	+	0	NA	intron (NM_003374, intron 1 of 8)	LTR33|LTR|ERVL	5258	NR_036624								
228923	chr9	113154301	113154780	+	0	NA	intron (NM_001860, intron 1 of 3)	MER5A|DNA|hAT-Charlie	3533	NM_001860	1318		NM_001860	ENSG00000136867	SLC31A2	COPT2|CTR2|hCTR2	solute carrier family 31 member 2	protein-coding
217179	chr8	26309321	26310180	+	0	NA	intron (NM_002717, intron 2 of 9)	Tigger1|DNA|TcMar-Tigger	16534	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
13509	chr1	114746571	114747130	+	0	NA	intron (NM_001242891, intron 2 of 20)	intron (NM_001242891, intron 2 of 20)	11134	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
98893	chr17	48581721	48582450	+	0	NA	intron (NM_001384749, intron 1 of 4)	CpG	294	NM_001330322	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
4557	chr1	22043801	22044200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8709	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
31115	chr10	89333711	89334830	+	0	NA	intron (NM_001031683, intron 1 of 1)	intron (NM_001031683, intron 1 of 1)	1741	NM_001289759	3437		NM_001549	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41	interferon induced protein with tetratricopeptide repeats 3	protein-coding
229233	chr9	114927421	114927680	+	0	NA	intron (NM_001244, intron 1 of 3)	intron (NM_001244, intron 1 of 3)	3041	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
98922	chr17	48612611	48613400	+	0	NA	3' UTR (NM_024016, exon 2 of 2)	3' UTR (NM_024016, exon 2 of 2)	-1988	NM_004502	3217		NM_004502	ENSG00000260027	HOXB7	HHO.C1|HOX2|HOX2C|Hox-2.3	homeobox B7	protein-coding
22310	chr1	213244571	213244730	+	0	NA	intron (NM_001349663, intron 7 of 9)	intron (NM_001349663, intron 7 of 9)	193409	NM_012424	26750		NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
215262	chr7	157000801	157002050	+	0	NA	Intergenic	L1MB2|LINE|L1	-4882	NR_147077	105375606		NR_147077	ENSG00000235029	MNX1-AS2	-	MNX1 antisense RNA 2	ncRNA
35082	chr11	620721	620980	+	0	NA	intron (NM_001171968, intron 7 of 14)	intron (NM_001171968, intron 7 of 14)	4105	NM_001171968	53841		NM_017717	ENSG00000099834	CDHR5	MLPCDH|MU-PCDH|MUCDHL|MUPCDH	cadherin related family member 5	protein-coding
101673	chr17	68347871	68348380	+	0	NA	intron (NM_001352901, intron 4 of 11)	intron (NM_001352901, intron 4 of 11)	55990	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
11053	chr1	85015901	85016100	+	0	NA	Intergenic	Intergenic	-18887	NM_153259	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
5225	chr1	24992451	24993180	+	0	NA	Intergenic	Intergenic	-27805	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
1017	chr1	1861451	1862280	+	0	NA	intron (NM_001282538, intron 1 of 9)	L1MC4|LINE|L1	29222	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
221222	chr8	121056251	121056350	+	0	NA	Intergenic	L1PA3|LINE|L1	-244254	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
196505	chr6	43669271	43670630	+	0	NA	intron (NM_001193341, intron 5 of 5)	intron (NM_001193341, intron 5 of 5)	17841	NM_018135	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
115551	chr19	15514671	15515450	+	0	NA	intron (NM_173483, intron 1 of 13)	intron (NM_173483, intron 1 of 13)	6535	NM_173483	126410		NM_173483	ENSG00000171954	CYP4F22	ARCI5|INLNE|LI3	cytochrome P450 family 4 subfamily F member 22	protein-coding
182916	chr5	70506451	70506630	+	0	NA	intron (NR_034021, intron 7 of 10)	THE1B-int|LTR|ERVL-MaLR	-5637	NR_033968	100049076		NR_033968		GUSBP17	GUSBP9	GUSB pseudogene 17	pseudo
125504	chr2	12708651	12709680	+	0	NA	Intergenic	MIR|SINE|MIR	-7707	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
238674	chrX	154037821	154038180	+	0	NA	intron (NM_001110792, intron 1 of 2)	L1PB4|LINE|L1	-18011	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
205050	chr7	6578621	6579200	+	0	NA	intron (NM_001371297, intron 2 of 7)	AluJo|SINE|Alu	1456	NR_163913	55146		NM_018106	ENSG00000136247	ZDHHC4	ZNF374	zinc finger DHHC-type palmitoyltransferase 4	protein-coding
163871	chr3	52499851	52500150	+	0	NA	intron (NM_015136, intron 1 of 68)	FLAM_A|SINE|Alu	4662	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
109648	chr19	1004771	1004930	+	0	NA	exon (NM_138690, exon 3 of 9)	exon (NM_138690, exon 3 of 9)	4431	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
50318	chr12	46609151	46609880	+	0	NA	intron (NR_125377, intron 3 of 3)	intron (NR_125377, intron 3 of 3)	216482	NM_018018	55089		NM_018018	ENSG00000139209	SLC38A4	ATA3|NAT3|PAAT|SNAT4	solute carrier family 38 member 4	protein-coding
58745	chr12	132605001	132605330	+	0	NA	intron (NM_001195520, intron 2 of 5)	MIRc|SINE|MIR	5417	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
100576	chr17	62995371	62995630	+	0	NA	intron (NM_025185, intron 1 of 25)	Tigger16a|DNA|TcMar-Tigger	29265	NM_025185	26115		NM_015623	ENSG00000170921	TANC2	IDDALDS|ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
112274	chr19	5806871	5807030	+	0	NA	intron (NM_004558, intron 1 of 2)	intron (NM_004558, intron 1 of 2)	1883	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
6588	chr1	28761771	28761930	+	0	NA	intron (NM_016258, intron 4 of 4)	intron (NM_016258, intron 4 of 4)	24910	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
76021	chr15	72100321	72100580	+	0	NA	intron (NM_006901, intron 1 of 41)	SVA_D|Retroposon|SVA	-13808	NM_001166340	123228		NM_145204	ENSG00000166192	SENP8	DEN1|NEDP1|PRSC2	SUMO peptidase family member, NEDD8 specific	protein-coding
70475	chr14	102075901	102076200	+	0	NA	Intergenic	AluSz|SINE|Alu	10994	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
155457	chr22	38476621	38477080	+	0	NA	intron (NM_006855, intron 2 of 4)	AluSz6|SINE|Alu	8754	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
181443	chr5	40879351	40879700	+	0	NA	Intergenic	Intergenic	-29972	NM_000587	730		NM_000587	ENSG00000112936	C7	-	complement C7	protein-coding
97578	chr17	44098001	44098580	+	0	NA	intron (NM_001382393, intron 3 of 26)	intron (NM_001382393, intron 3 of 26)	-17622	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
106155	chr18	9914901	9915950	+	0	NA	intron (NM_194434, intron 1 of 5)	intron (NM_194434, intron 1 of 5)	1409	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
28926	chr10	63184171	63184530	+	0	NA	intron (NM_001322258, intron 20 of 24)	AluSc|SINE|Alu	51022	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
25903	chr10	11288071	11288430	+	0	NA	intron (NM_001326330, intron 8 of 12)	intron (NM_001326330, intron 8 of 12)	56424	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70323	chr14	101832471	101833430	+	0	NA	intron (NM_001352916, intron 2 of 13)	MIR|SINE|MIR	23087	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
96949	chr17	42188471	42188630	+	0	NA	TTS (NM_001142623)	TTS (NM_001142623)	-3098	NM_001524	3060		NM_001524	ENSG00000161610	HCRT	NRCLP1|OX|PPOX	hypocretin neuropeptide precursor	protein-coding
107745	chr18	50285371	50285880	+	0	NA	intron (NM_001101654, intron 5 of 14)	intron (NM_001101654, intron 5 of 14)	2697	NM_014593	30827		NM_014593	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
178697	chr4	152544421	152545200	+	0	NA	Intergenic	Intergenic	8382	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
189478	chr5	173085651	173086150	+	0	NA	intron (NM_153607, intron 2 of 8)	intron (NM_153607, intron 2 of 8)	29548	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
212077	chr7	115023321	115023580	+	0	NA	Intergenic	Intergenic	-55508	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
57220	chr12	121517871	121518230	+	0	NA	intron (NM_001005366, intron 9 of 22)	AluSq|SINE|Alu	62196	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
37697	chr11	28110021	28111150	+	0	NA	intron (NM_001297775, intron 2 of 6)	CpG	2197	NM_152636	196074		NM_152636	ENSG00000169519	METTL15	METT5D1	methyltransferase 15, mitochondrial 12S rRNA N4-cytidine	protein-coding
222405	chr8	134319801	134320680	+	0	NA	Intergenic	Intergenic	-277831	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
218721	chr8	58661321	58661580	+	0	NA	Intergenic	AluJr|SINE|Alu	-1597	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
1122	chr1	2129401	2129880	+	0	NA	intron (NM_001033582, intron 1 of 14)	L1MC3|LINE|L1	24924	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
52023	chr12	53990421	53991400	+	0	NA	promoter-TSS (NR_029617)	promoter-TSS (NR_029617)	-828	NR_029617	406973		NR_029617	ENSG00000207924	MIR196A2	MIRN196-2|MIRN196A2|mir-196a-2	microRNA 196a-2	ncRNA
152859	chr22	22293551	22293980	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-4333	NR_027293	96610		NM_080926		BMS1P20	IGL|IGLV|IGLV1	BMS1 pseudogene 20	pseudo
82463	chr16	17013451	17014430	+	0	NA	Intergenic	Intergenic	-120564	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
140648	chr2	233583271	233583430	+	0	NA	Intergenic	L1PA3|LINE|L1	-16568	NM_001382299	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
238773	chrX	154359671	154359830	+	0	NA	exon (NM_001456, exon 23 of 47)	exon (NM_001456, exon 23 of 47)	14884	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
2386	chr1	9427521	9427880	+	0	NA	intron (NR_104622, intron 1 of 1)	intron (NR_104622, intron 1 of 1)	1216	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
2461	chr1	9646651	9647150	+	0	NA	Intergenic	AluSx|SINE|Alu	-4831	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
185626	chr5	131514571	131515700	+	0	NA	intron (NM_016340, intron 7 of 27)	intron (NM_016340, intron 7 of 27)	120094	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
190018	chr5	177492971	177493130	+	0	NA	intron (NM_203352, intron 2 of 12)	intron (NM_203352, intron 2 of 12)	4554	NR_103804	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
101774	chr17	73152121	73152380	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-12760	NM_001050	6752		NM_001050	ENSG00000180616	SSTR2	SST2	somatostatin receptor 2	protein-coding
198390	chr6	105647971	105648880	+	0	NA	Intergenic	Intergenic	-245343	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
149576	chr21	33241621	33242230	+	0	NA	exon (NM_001289126, exon 2 of 8)	exon (NM_001289126, exon 2 of 8)	11987	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
109960	chr19	1385471	1385730	+	0	NA	intron (NM_001363602, intron 1 of 7)	AluSp|SINE|Alu	1693	NM_001363602	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
173746	chr4	16213171	16213530	+	0	NA	intron (NM_153365, intron 2 of 13)	intron (NM_153365, intron 2 of 13)	13121	NM_153365	202018		NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding
90707	chr17	1784001	1784350	+	0	NA	intron (NM_052928, intron 8 of 10)	intron (NM_052928, intron 8 of 10)	12504	NM_001329905	5176		NM_002615	ENSG00000132386	SERPINF1	EPC-1|OI12|OI6|PEDF|PIG35	serpin family F member 1	protein-coding
157662	chr22	46251821	46252080	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-1657	NM_207327	150383		NM_207327	ENSG00000205643	CDPF1	C22orf40|CDKN1A	cysteine rich DPF motif domain containing 1	protein-coding
80855	chr16	3511451	3511750	+	0	NA	intron (NM_024793, intron 1 of 7)	intron (NM_024793, intron 1 of 7)	1706	NM_024793	23059		NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
111125	chr19	3230521	3230780	+	0	NA	intron (NR_033342, intron 1 of 12)	L2a|LINE|L2	5372	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
39838	chr11	62310201	62310430	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-11240	NM_206998	404552		NM_206998	ENSG00000197745	SCGB1D4	IIS	secretoglobin family 1D member 4	protein-coding
125165	chr2	10041751	10042770	+	0	NA	intron (NR_135558, intron 2 of 2)	intron (NR_135558, intron 2 of 2)	1141	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
103288	chr17	77836221	77837130	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	47412	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
133522	chr2	120209871	120210600	+	0	NA	Intergenic	Intergenic	13165	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
128322	chr2	54666721	54666980	+	0	NA	intron (NM_003128, intron 34 of 35)	intron (NM_003128, intron 34 of 35)	-58162	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
6396	chr1	27940071	27940850	+	0	NA	intron (NM_001304579, intron 1 of 7)	MIRc|SINE|MIR	5460	NM_001304579	27293		NM_014474	ENSG00000130768	SMPDL3B	ASML3B	sphingomyelin phosphodiesterase acid like 3B	protein-coding
102321	chr17	75393551	75394800	+	0	NA	intron (NM_203506, intron 1 of 4)	intron (NM_203506, intron 1 of 4)	11503	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
38605	chr11	46316071	46316450	+	0	NA	intron (NM_052854, intron 8 of 11)	intron (NM_052854, intron 8 of 11)	-16666	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
196164	chr6	42561571	42561730	+	0	NA	Intergenic	AluSx|SINE|Alu	-2372	NM_015255	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
220409	chr8	100266471	100266830	+	0	NA	intron (NM_183419, intron 5 of 9)	AluJb|SINE|Alu	35543	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
59166	chr13	21637271	21637680	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-33305	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
214040	chr7	143355451	143355800	+	0	NA	3' UTR (NM_001031690, exon 7 of 7)	3' UTR (NM_001031690, exon 7 of 7)	6455	NM_014690	9715		NM_014690	ENSG00000159784	FAM131B	-	family with sequence similarity 131 member B	protein-coding
150855	chr21	44079901	44080400	+	0	NA	intron (NM_003274, intron 13 of 22)	intron (NM_003274, intron 13 of 22)	5826	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
104541	chr17	81291551	81292830	+	0	NA	intron (NM_001037984, intron 1 of 15)	AluSg4|SINE|Alu	3117	NM_001037984	124565		NM_138570	ENSG00000157637	SLC38A10	PP1744|SNAT10	solute carrier family 38 member 10	protein-coding
68826	chr14	91271801	91272230	+	0	NA	3' UTR (NM_001080414, exon 30 of 30)	3' UTR (NM_001080414, exon 30 of 30)	-18135	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
65803	chr14	54742771	54743130	+	0	NA	intron (NM_015589, intron 4 of 12)	intron (NM_015589, intron 4 of 12)	-11883	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
39131	chr11	48307801	48308100	+	0	NA	TTS (NM_001004725)	TTS (NM_001004725)	1727	NM_001004725	256148		NM_001004725	ENSG00000176555	OR4S1	OR11-100	olfactory receptor family 4 subfamily S member 1	protein-coding
121947	chr19	48467551	48467650	+	0	NA	TTS (NM_013348)	TTS (NM_013348)	-1608	NM_017457	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
30612	chr10	80197571	80197730	+	0	NA	intron (NM_001278408, intron 1 of 16)	AluY|SINE|Alu	6841	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
168094	chr3	138328801	138330380	+	0	NA	5' UTR (NM_001349025, exon 1 of 10)	5' UTR (NM_001349025, exon 1 of 10)	261	NM_001349025	347736		NM_178130	ENSG00000181322	NME9	NM23-H9|NXL2|TXL-2|TXL2|TXNDC6	NME/NM23 family member 9	protein-coding
120138	chr19	42211021	42211350	+	0	NA	intron (NM_001270615, intron 3 of 4)	AluJb|SINE|Alu	6492	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
71574	chr14	106436321	106436580	+	0	NA	Intergenic	Intergenic	-45989	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
140960	chr2	237901221	237901750	+	0	NA	intron (NM_005855, intron 2 of 2)	L2b|LINE|L2	41862	NM_005855	10267		NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding
136901	chr2	189580471	189581830	+	0	NA	promoter-TSS (NM_014585)	promoter-TSS (NM_014585)	-364	NM_014585	30061		NM_014585	ENSG00000138449	SLC40A1	FPN|FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3	solute carrier family 40 member 1	protein-coding
213508	chr7	139065901	139066100	+	0	NA	intron (NM_020119, intron 7 of 12)	intron (NM_020119, intron 7 of 12)	-21843	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
221197	chr8	120747871	120748450	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-13093	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
84414	chr16	30354601	30358280	+	0	NA	TTS (NM_015527)	TTS (NM_015527)	-1132	NM_006110	10421		NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
158150	chr22	50189201	50189400	+	0	NA	intron (NM_001378762, intron 1 of 9)	intron (NM_001378762, intron 1 of 9)	-1287	NM_001320488	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
2598	chr1	9900421	9900880	+	0	NA	intron (NM_020248, intron 1 of 5)	intron (NM_020248, intron 1 of 5)	9619	NM_020248	56998		NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
219259	chr8	67320021	67320530	+	0	NA	intron (NM_006421, intron 1 of 38)	L1ME1|LINE|L1	23506	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
136651	chr2	180001321	180001580	+	0	NA	intron (NM_001376029, intron 1 of 19)	AluSz6|SINE|Alu	-1544	NM_001376030	57703		NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding
184802	chr5	111232351	111233250	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	8416	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
148151	chr20	63503521	63503780	+	0	NA	Intergenic	Intergenic	-4567	NM_001958	1917		NM_001958	ENSG00000101210	EEF1A2	DEE33|EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding
199189	chr6	111773451	111774950	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-14283	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
172108	chr4	1113071	1113780	+	0	NA	promoter-TSS (NR_134676)	promoter-TSS (NR_134676)	139	NR_159498	285498		NM_194439	ENSG00000178222	RNF212	SPGF62|ZHP3	ring finger protein 212	protein-coding
87753	chr16	75246071	75246230	+	0	NA	intron (NM_001170715, intron 1 of 6)	AluJb|SINE|Alu	2001	NM_001170719	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
89810	chr16	89557151	89558300	+	0	NA	TTS (NM_001363850)	TTS (NM_001363850)	-2932	NM_001243131	6137		NM_000977	ENSG00000167526	RPL13	BBC1|D16S444E|D16S44E|L13|SEMDIST|eL13	ribosomal protein L13	protein-coding
230792	chr9	128954021	128954400	+	0	NA	intron (NM_015354, intron 3 of 43)	L1MD3|LINE|L1	6511	NM_015354	23511		NM_015354	ENSG00000095319	NUP188	KIAA0169|SANDSTEF|hNup188	nucleoporin 188	protein-coding
226060	chr9	61857601	61858730	+	0	NA	Intergenic	SST1|Satellite|centr	4081	NR_027421	100132948		NM_001024942	ENSG00000231527	FAM27C	FAM27A|FAM27A1|FAM27A3|bA7G23.5	family with sequence similarity 27 member C	ncRNA
26567	chr10	21727321	21727980	+	0	NA	intron (NR_136736, intron 18 of 25)	intron (NR_136736, intron 18 of 25)	193418	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
4855	chr1	23699671	23700100	+	0	NA	Intergenic	Intergenic	8079	NM_000975	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
16330	chr1	154241851	154242450	+	0	NA	intron (NM_001375623, intron 9 of 27)	intron (NM_001375623, intron 9 of 27)	-17577	NR_145714	109617023		NR_145714	ENSG00000201129	SNORA58B	-	small nucleolar RNA, H/ACA box 58B	snoRNA
150961	chr21	44317121	44318080	+	0	NA	intron (NM_001002021, intron 12 of 24)	intron (NM_001002021, intron 12 of 24)	17547	NM_001002021	5211		NM_002626	ENSG00000141959	PFKL	ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver type	protein-coding
83298	chr16	24188521	24190030	+	0	NA	intron (NM_212535, intron 15 of 16)	MIRb|SINE|MIR	-13841	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
29095	chr10	68156321	68156600	+	0	NA	intron (NM_001256268, intron 10 of 23)	MamGypsy2-LTR|LTR|Gypsy	46972	NR_045663	84665		NM_032578	ENSG00000138347	MYPN	CMD1DD|CMH22|CMYP24|MYOP|NEM11|RCM4	myopalladin	protein-coding
173542	chr4	10078801	10079400	+	0	NA	promoter-TSS (NR_036090)	promoter-TSS (NR_036090)	-408	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
127125	chr2	37657551	37658530	+	0	NA	intron (NM_001371569, intron 1 of 1)	MER58A|DNA|hAT-Charlie	13602	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
79368	chr16	636701	638730	+	0	NA	intron (NR_149003, intron 1 of 3)	intron (NR_149003, intron 1 of 3)	763	NR_149003	100287175		NR_149003		LOC100287175	-	uncharacterized LOC100287175	ncRNA
61590	chr13	72783801	72784380	+	0	NA	intron (NM_006346, intron 2 of 17)	L1MA8|LINE|L1	1957	NR_146206	10464		NM_006346	ENSG00000083535	PIBF1	C13orf24|CEP90|JBTS33|PIBF	progesterone immunomodulatory binding factor 1	protein-coding
139016	chr2	218389601	218390000	+	0	NA	intron (NM_000578, intron 8 of 14)	intron (NM_000578, intron 8 of 14)	7527	NM_000578	6556		NM_000578	ENSG00000018280	SLC11A1	LSH|NRAMP|NRAMP1	solute carrier family 11 member 1	protein-coding
188303	chr5	151164701	151165100	+	0	NA	Intergenic	Intergenic	-7121	NM_001363114	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
178679	chr4	152522371	152522850	+	0	NA	intron (NM_001349798, intron 2 of 13)	MER20|DNA|hAT-Charlie	12423	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
67148	chr14	68719501	68720180	+	0	NA	Intergenic	L1ME1|LINE|L1	73227	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
212099	chr7	116150421	116150680	+	0	NA	Intergenic	Intergenic	-59989	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
197873	chr6	89091921	89092230	+	0	NA	Intergenic	AluY|SINE|Alu	11324	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
9526	chr1	51447151	51447650	+	0	NA	intron (NM_001981, intron 9 of 24)	intron (NM_001981, intron 9 of 24)	-25305	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
12208	chr1	100393171	100393500	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	40829	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
155622	chr22	38867901	38868100	+	0	NA	intron (NM_014292, intron 4 of 4)	intron (NM_014292, intron 4 of 4)	4216	NM_001303494	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
133726	chr2	127383821	127384530	+	0	NA	intron (NM_001371911, intron 1 of 16)	AluY|SINE|Alu	3800	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
114481	chr19	12749571	12749730	+	0	NA	Intergenic	AluSg|SINE|Alu	-2141	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
185388	chr5	128086471	128087050	+	0	NA	intron (NR_046207, intron 1 of 26)	intron (NR_046207, intron 1 of 26)	2994	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
29060	chr10	67880321	67881300	+	0	NA	Intergenic	AluJr|SINE|Alu	-3846	NM_012238	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
146242	chr20	48827401	48829150	+	0	NA	promoter-TSS (NM_020820)	promoter-TSS (NM_020820)	-276	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
96767	chr17	41731371	41731730	+	0	NA	exon (NM_001367462, exon 6 of 10)	exon (NM_001367462, exon 6 of 10)	3093	NM_001367462	9001		NM_003949	ENSG00000173805	HAP1	HAP2|HIP5|HLP|hHLP1	huntingtin associated protein 1	protein-coding
33873	chr10	124414771	124414930	+	0	NA	intron (NM_001322969, intron 1 of 10)	AluJo|SINE|Alu	4073	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
140305	chr2	232446201	232446630	+	0	NA	Intergenic	Intergenic	-9738	NM_001631	248		NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
187698	chr5	143359651	143360150	+	0	NA	intron (NR_157096, intron 1 of 7)	AluSx1|SINE|Alu	43383	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
61565	chr13	67230301	67231380	+	0	NA	promoter-TSS (NM_001318374)	promoter-TSS (NM_001318374)	-504	NM_001318374	5101		NM_020403	ENSG00000184226	PCDH9	-	protocadherin 9	protein-coding
46231	chr11	124622571	124623900	+	0	NA	intron (NR_016021, intron 1 of 7)	CpG	371	NR_016021	84897		NM_032811	ENSG00000154144	TBRG1	NIAM|TB-5	transforming growth factor beta regulator 1	protein-coding
216635	chr8	22107451	22107850	+	0	NA	exon (NM_024815, exon 3 of 3)	exon (NM_024815, exon 3 of 3)	1769	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
117947	chr19	33237001	33237200	+	0	NA	Intergenic	Intergenic	-11250	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
231794	chr9	132353321	132353580	+	0	NA	intron (NM_001351527, intron 2 of 25)	intron (NM_001351527, intron 2 of 25)	1406	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
142003	chr20	1470021	1470330	+	0	NA	Intergenic	LTR60|LTR|ERV1	-2483	NR_038164	55968		NM_016143	ENSG00000088833	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 cofactor	protein-coding
212142	chr7	116576971	116577130	+	0	NA	intron (NR_165033, intron 2 of 4)	MamGypLTR1b|LTR|Gypsy	37607	NR_120506	100996266		NR_120506		COMETT	COMET|LINC01510	cytosolic oncogenic antisense to MET transcript	ncRNA
108793	chr18	77438301	77438500	+	0	NA	Intergenic	(AAAAC)n|Simple_repeat|Simple_repeat	188552	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
67841	chr14	73948271	73949080	+	0	NA	intron (NM_152445, intron 1 of 8)	L1MB8|LINE|L1	-1259	NM_182480	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
206398	chr7	30983601	30984330	+	0	NA	Intergenic	Intergenic	20012	NM_000823	2692		NM_000823	ENSG00000106128	GHRHR	GHRFR|GRFR|IGHD1B|IGHD4	growth hormone releasing hormone receptor	protein-coding
152912	chr22	22763071	22763230	+	0	NA	Intergenic	LTR16|LTR|ERVL	-59626	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
112992	chr19	7886871	7887650	+	0	NA	Intergenic	AluY|SINE|Alu	-1245	NM_001268284	80131		NM_025061	ENSG00000171017	LRRC8E	-	leucine rich repeat containing 8 VRAC subunit E	protein-coding
171777	chr4	124181	125580	+	0	NA	5' UTR (NM_001289930, exon 1 of 4)	5' UTR (NM_001289930, exon 1 of 4)	379	NM_001039127	255403		NM_153691	ENSG00000250312	ZNF718	-	zinc finger protein 718	protein-coding
189795	chr5	176812871	176813830	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	2791	NM_133369	90249		NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
215036	chr7	152459951	152460250	+	0	NA	Intergenic	Intergenic	-4024	NR_027387	100128822		NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
94643	chr17	30118671	30119100	+	0	NA	intron (NM_032141, intron 2 of 6)	AluSx1|SINE|Alu	-1725	NR_036149	100423003		NR_036149	ENSG00000284399	MIR3184	-	microRNA 3184	ncRNA
32927	chr10	110241451	110241950	+	0	NA	intron (NM_001008541, intron 2 of 4)	intron (NM_001008541, intron 2 of 4)	15704	NM_005962	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
53710	chr12	68591371	68592550	+	0	NA	Intergenic	Intergenic	-18939	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
120249	chr19	42419801	42420650	+	0	NA	intron (NM_005357, intron 1 of 9)	MIR|SINE|MIR	-3530	NR_073179	100996307		NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
47268	chr12	1544901	1545050	+	0	NA	Intergenic	AluY|SINE|Alu	-12783	NR_160736	107984507		NR_160736		LOC107984507	-	uncharacterized LOC107984507	ncRNA
73180	chr15	41497071	41497530	+	0	NA	intron (NM_002220, intron 1 of 6)	intron (NM_002220, intron 1 of 6)	3426	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
86534	chr16	67171371	67171530	+	0	NA	5' UTR (NM_001276319, exon 2 of 6)	5' UTR (NM_001276319, exon 2 of 6)	912	NM_001276307	8996		NM_003946	ENSG00000140939	NOL3	ARC|FCM|MYOCL1|MYP|NOP|NOP30	nucleolar protein 3	protein-coding
152283	chr22	20301621	20301880	+	0	NA	Intergenic	Intergenic	18310	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
105810	chr18	2955151	2955250	+	0	NA	intron (NM_001375809, intron 2 of 19)	MSTB|LTR|ERVL-MaLR	-8577	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
7229	chr1	32328521	32329050	+	0	NA	intron (NM_004964, intron 6 of 13)	intron (NM_004964, intron 6 of 13)	7448	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
217197	chr8	26324971	26325330	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	31934	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
69686	chr14	98164151	98164250	+	0	NA	Intergenic	Intergenic	-186076	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
20507	chr1	198662921	198663550	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	24195	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
161379	chr3	41158571	41158730	+	0	NA	Intergenic	Intergenic	-40855	NM_001330729	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
225356	chr9	34664121	34664800	+	0	NA	non-coding (NR_135148, exon 3 of 3)	non-coding (NR_135148, exon 3 of 3)	1585	NR_135148	730098		NM_001320037	ENSG00000187186	LOC730098	-	uncharacterized LOC730098	protein-coding
108694	chr18	77054351	77055950	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-38095	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
231693	chr9	131714101	131714300	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-4358	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
109305	chr19	570011	571700	+	0	NA	promoter-TSS (NM_198590)	promoter-TSS (NM_198590)	-428	NM_198591	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
124823	chr2	7694521	7694780	+	0	NA	Intergenic	Intergenic	205005	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
175250	chr4	61945301	61945500	+	0	NA	intron (NM_001322246, intron 14 of 25)	L1HS|LINE|L1	216365	NR_110595	101927186		NR_110595		ADGRL3-AS1	LPHN3-AS1	ADGRL3 antisense RNA 1	ncRNA
79677	chr16	1248501	1248700	+	0	NA	Intergenic	L1MC4|LINE|L1	-7469	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
230596	chr9	128576471	128576830	+	0	NA	intron (NM_001375310, intron 5 of 57)	intron (NM_001375310, intron 5 of 57)	24063	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
232410	chr9	136055721	136056050	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	39404	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
191456	chr6	10747101	10748550	+	0	NA	promoter-TSS (NM_001127711)	promoter-TSS (NM_001127711)	20	NM_030969	81853		NM_030969	ENSG00000137210	TMEM14B	-	transmembrane protein 14B	protein-coding
194175	chr6	32113221	32113550	+	0	NA	Intergenic	Intergenic	-4047	NM_001365276	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
154587	chr22	36276271	36276980	+	0	NA	Intergenic	AluSg4|SINE|Alu	10282	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
123976	chr19	55429451	55429750	+	0	NA	3' UTR (NM_001145176, exon 4 of 4)	3' UTR (NM_001145176, exon 4 of 4)	13263	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
161073	chr3	38086421	38086680	+	0	NA	intron (NM_001321153, intron 9 of 36)	MIR3|SINE|MIR	47342	NM_007335	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
165156	chr3	72255621	72256290	+	0	NA	Intergenic	Intergenic	104698	NR_038221	201617		NR_038221	ENSG00000243083	LINC00870	-	long intergenic non-protein coding RNA 870	ncRNA
221179	chr8	120609421	120609680	+	0	NA	intron (NM_021021, intron 3 of 6)	intron (NM_021021, intron 3 of 6)	-151703	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
154806	chr22	36977901	36979130	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	13267	NR_038954	100506241		NR_038954	ENSG00000215403	LL22NC01-81G9.3	-	uncharacterized protein FLJ39582-like	ncRNA
205834	chr7	24835921	24836680	+	0	NA	intron (NM_015550, intron 14 of 22)	L1ME4c|LINE|L1	56321	NM_145322	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
206366	chr7	30564221	30564880	+	0	NA	intron (NR_038889, intron 3 of 6)	intron (NR_038889, intron 3 of 6)	13229	NR_038889	401320		NR_038889		GARS1-DT	GARS-DT	GARS1 divergent transcript	ncRNA
90219	chr17	501521	502130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-55885	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
32715	chr10	104229171	104229530	+	0	NA	intron (NM_025145, intron 2 of 37)	intron (NM_025145, intron 2 of 37)	3014	NM_025145	80217		NM_025145	ENSG00000197748	CFAP43	C10orf79|HYDNP1|SPGF19|WDR96|bA373N18.2	cilia and flagella associated protein 43	protein-coding
122245	chr19	49019391	49020280	+	0	NA	promoter-TSS (NR_073552)	promoter-TSS (NR_073552)	-351	NR_073552	101059948		NM_001396011	ENSG00000268655	SAXO3	-	stabilizer of axonemal microtubules 3	protein-coding
120027	chr19	41951301	41952180	+	0	NA	Intergenic	Intergenic	7581	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
70116	chr14	100245571	100245750	+	0	NA	intron (NM_003403, intron 1 of 4)	AluSx|SINE|Alu	6516	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
51088	chr12	49965571	49966180	+	0	NA	TTS (NM_001651)	TTS (NM_001651)	-2951	NR_110589	101927318		NR_110589	ENSG00000257588	AQP5-AS1	MIAC	AQP5 and AQP2 antisense RNA 2	ncRNA
184787	chr5	111071821	111072080	+	0	NA	exon (NM_033035, exon 1 of 4)	exon (NM_033035, exon 1 of 4)	237	NM_033035	85480		NM_033035	ENSG00000145777	TSLP	-	thymic stromal lymphopoietin	protein-coding
229421	chr9	121322071	121322230	+	0	NA	intron (NM_001353056, intron 12 of 18)	L1MC5a|LINE|L1	22319	NM_000177	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
50786	chr12	49045401	49045750	+	0	NA	intron (NM_003482, intron 19 of 54)	AluY|SINE|Alu	15219	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
169048	chr3	153163951	153164280	+	0	NA	3' UTR (NM_002886, exon 1 of 1)	3' UTR (NM_002886, exon 1 of 1)	1889	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
27778	chr10	35413371	35413730	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	76676	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
32674	chr10	103908001	103909250	+	0	NA	intron (NM_024928, intron 3 of 9)	intron (NM_024928, intron 3 of 9)	9559	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
79924	chr16	1734151	1734480	+	0	NA	promoter-TSS (NR_036138)	promoter-TSS (NR_036138)	-670	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
60464	chr13	41059521	41062580	+	0	NA	promoter-TSS (NM_007187)	promoter-TSS (NM_007187)	336	NM_001370330	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
132434	chr2	105834251	105834350	+	0	NA	intron (NM_001004722, intron 2 of 3)	L1MA5|LINE|L1	-17547	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
159595	chr3	15107901	15108900	+	0	NA	Intergenic	Intergenic	-9243	NR_126155	64145		NM_022340	ENSG00000131381	RBSN	Rabenosyn-5|ZFYVE20	rabenosyn, RAB effector	protein-coding
15817	chr1	151303501	151303700	+	0	NA	exon (NM_002651, exon 7 of 13)	exon (NM_002651, exon 7 of 13)	21301	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
119515	chr19	40528751	40529650	+	0	NA	intron (NM_020971, intron 18 of 35)	CpG	-1291	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
8301	chr1	40053001	40053650	+	0	NA	intron (NM_001350484, intron 2 of 13)	intron (NM_001350484, intron 2 of 13)	12299	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
176332	chr4	88158221	88159050	+	0	NA	promoter-TSS (NM_004827)	promoter-TSS (NM_004827)	4	NM_004827	9429		NM_004827	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|CDw388|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1	ATP binding cassette subfamily G member 2 (JR blood group)	protein-coding
100772	chr17	63993451	63994500	+	0	NA	Intergenic	Intergenic	-4376	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
217222	chr8	26512821	26513230	+	0	NA	intron (NM_007257, intron 1 of 2)	intron (NM_007257, intron 1 of 2)	847	NM_007257	10687		NM_007257	ENSG00000240694	PNMA2	MA2|MM2|RGAG2	PNMA family member 2	protein-coding
230568	chr9	128503051	128503150	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluSx|SINE|Alu	-1592	NM_001499	2733		NM_001499	ENSG00000119392	GLE1	CAAHC|CAAHD|GLE1L|LCCS|LCCS1|hGLE1	GLE1 RNA export mediator	protein-coding
68447	chr14	81530951	81531250	+	0	NA	intron (NM_005065, intron 1 of 20)	Tigger3c|DNA|TcMar-Tigger	2753	NM_005065	6400		NM_005065	ENSG00000071537	SEL1L	Hrd3|PRO1063|SEL1-LIKE|SEL1L1	SEL1L adaptor subunit of SYVN1 ubiquitin ligase	protein-coding
193638	chr6	30815321	30816400	+	0	NA	intron (NR_130726, intron 1 of 1)	LTR12C|LTR|ERV1	14799	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
31476	chr10	96571051	96571350	+	0	NA	intron (NM_020123, intron 2 of 14)	HAL1|LINE|L1	15812	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
188009	chr5	149544451	149545030	+	0	NA	intron (NM_001892, intron 2 of 9)	(TA)n|Simple_repeat|Simple_repeat	5625	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
34441	chr10	132421301	132422230	+	0	NA	Intergenic	Intergenic	-23424	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
212393	chr7	128102251	128103030	+	0	NA	Intergenic	Intergenic	20779	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
15034	chr1	148362401	148363000	+	0	NA	promoter-TSS (NR_104082)	promoter-TSS (NR_104082)	-167	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
210095	chr7	97117271	97118330	+	0	NA	exon (NM_020186, exon 1 of 2)	exon (NM_020186, exon 1 of 2)	102	NM_020186	57001		NM_020186	ENSG00000196636	SDHAF3	ACN9|DC11|LYRM10|Sdh7	succinate dehydrogenase complex assembly factor 3	protein-coding
84889	chr16	31194971	31195800	+	0	NA	TTS (NM_001170634)	TTS (NM_001170634)	-6500	NR_102400	100652740		NR_102400	ENSG00000261359	PYCARD-AS1	C16orf98|PYCARDOS	PYCARD antisense RNA 1	ncRNA
78533	chr15	92954401	92955050	+	0	NA	intron (NM_001271, intron 14 of 38)	intron (NM_001271, intron 14 of 38)	50326	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
27941	chr10	42075071	42075480	+	0	NA	Intergenic	Intergenic	292770	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
88908	chr16	87806221	87807200	+	0	NA	Intergenic	Intergenic	-27562	NR_120309	102724467		NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA
187666	chr5	143204821	143205130	+	0	NA	intron (NM_001349547, intron 20 of 21)	intron (NM_001349547, intron 20 of 21)	12475	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
235535	chrX	47229951	47231030	+	0	NA	TTS (NM_001170460)	TTS (NM_001170460)	-2519	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
63655	chr14	20991301	20991700	+	0	NA	intron (NM_022734, intron 3 of 13)	intron (NM_022734, intron 3 of 13)	1520	NM_022734	64745		NM_022734	ENSG00000165792	METTL17	METT11D1	methyltransferase like 17	protein-coding
219883	chr8	85515051	85515150	+	0	NA	Intergenic	Intergenic	-50185	NR_121630	100996348		NR_121630		CA3-AS1	-	CA3 antisense RNA 1	ncRNA
137208	chr2	191204071	191205050	+	0	NA	Intergenic	Intergenic	-40844	NM_001330237	4430		NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
220224	chr8	96282921	96283180	+	0	NA	intron (NM_001290225, intron 2 of 10)	intron (NM_001290225, intron 2 of 10)	21148	NM_014754	9791		NM_014754	ENSG00000156471	PTDSS1	LMHD|PSS1|PSSA	phosphatidylserine synthase 1	protein-coding
184619	chr5	107235201	107235400	+	0	NA	Intergenic	Intergenic	-224286	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
142309	chr20	3469851	3469950	+	0	NA	Intergenic	Intergenic	-1118	NM_001207047	8455		NM_012070	ENSG00000088812	ATRN	DPPT-L|MGCA	attractin	protein-coding
198529	chr6	106533701	106533900	+	0	NA	intron (NM_001371242, intron 8 of 21)	L2a|LINE|L2	21945	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
82599	chr16	18860951	18861050	+	0	NA	intron (NM_015092, intron 25 of 62)	intron (NM_015092, intron 25 of 62)	-59451	NM_015161	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
149772	chr21	34811601	34812030	+	0	NA	intron (NM_001754, intron 7 of 8)	intron (NM_001754, intron 7 of 8)	65990	NR_038886	100506385		NR_038885	ENSG00000234380	LINC01426	lincRNA-uc002yug.2	long intergenic non-protein coding RNA 1426	ncRNA
180611	chr5	16489151	16489530	+	0	NA	intron (NM_001034850, intron 3 of 8)	intron (NM_001034850, intron 3 of 8)	19658	NM_019000	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
123949	chr19	55390501	55390830	+	0	NA	3' UTR (NM_001136134, exon 4 of 4)	3' UTR (NM_001136134, exon 4 of 4)	2484	NR_106863	102465483		NR_106863	ENSG00000284029	MIR6805	hsa-mir-6805	microRNA 6805	ncRNA
39637	chr11	61554221	61554700	+	0	NA	intron (NM_001370211, intron 2 of 7)	(AC)n|Simple_repeat|Simple_repeat	-11584	NM_001370210	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
44915	chr11	115334971	115335130	+	0	NA	intron (NR_135108, intron 1 of 1)	intron (NR_135108, intron 1 of 1)	1473	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
93469	chr17	18786751	18786850	+	0	NA	intron (NM_001316919, intron 1 of 6)	intron (NM_001316919, intron 1 of 6)	-2235	NM_001316920	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
89545	chr16	89204271	89204630	+	0	NA	Intergenic	L1MB3|LINE|L1	-2772	NM_001384764	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
238218	chrX	139930071	139930600	+	0	NA	intron (NM_001353810, intron 2 of 29)	intron (NM_001353810, intron 2 of 29)	2718	NM_001353811	286410		NM_173694	ENSG00000101974	ATP11C	ATPIG|ATPIQ|HACXL	ATPase phospholipid transporting 11C	protein-coding
181833	chr5	52912601	52912800	+	0	NA	intron (NM_181501, intron 14 of 28)	intron (NM_181501, intron 14 of 28)	-76652	NR_073107	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
64498	chr14	24330771	24330930	+	0	NA	intron (NM_001198592, intron 7 of 25).2	intron (NM_001198592, intron 7 of 25).2	4221	NM_139247	196883		NM_139247	ENSG00000129467	ADCY4	AC4	adenylate cyclase 4	protein-coding
42478	chr11	69905571	69905730	+	0	NA	Intergenic	Intergenic	-80257	NM_001378092	55107		NM_018043	ENSG00000131620	ANO1	DOG1|INDMS|MYMY7|ORAOV2|TAOS2|TMEM16A	anoctamin 1	protein-coding
206730	chr7	36620251	36620630	+	0	NA	intron (NM_001177506, intron 9 of 21)	intron (NM_001177506, intron 9 of 21)	-20320	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
48002	chr12	6922751	6923050	+	0	NA	3' UTR (NM_001975, exon 12 of 12)	3' UTR (NM_001975, exon 12 of 12)	-1559	NM_001007026	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
209533	chr7	77155051	77155750	+	0	NA	intron (NM_020879, intron 1 of 18)	intron (NM_020879, intron 1 of 18)	32785	NM_020879	57639		NM_020879	ENSG00000135205	CCDC146	MBO2	coiled-coil domain containing 146	protein-coding
235902	chrX	53000451	53001000	+	0	NA	Intergenic	CpG	-5253	NM_001242492	29057		NM_014138	ENSG00000268350	FAM156A	PRO0659|TMEM29	family with sequence similarity 156 member A	protein-coding
178990	chr4	163493921	163495220	+	0	NA	promoter-TSS (NM_018352)	promoter-TSS (NM_018352)	-120	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
112618	chr19	6755251	6755350	+	0	NA	exon (NM_005490, exon 5 of 10)	exon (NM_005490, exon 5 of 10)	12135	NM_005490	10045		NM_005490	ENSG00000125731	SH2D3A	NSP1	SH2 domain containing 3A	protein-coding
152698	chr22	21631151	21631480	+	0	NA	Intergenic	Intergenic	-1293	NR_163923	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
145401	chr20	41615571	41616150	+	0	NA	intron (NM_032221, intron 1 of 36)	intron (NM_032221, intron 1 of 36)	2517	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
64105	chr14	22772901	22773100	+	0	NA	TTS (NM_001126106)	TTS (NM_001126106)	6312	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
155400	chr22	38347171	38347530	+	0	NA	intron (NR_002821, intron 4 of 4)	intron (NR_002821, intron 4 of 4)	-29266	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
201522	chr6	149111671	149112130	+	0	NA	Intergenic	Intergenic	-79239	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
9876	chr1	54314171	54314530	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	77907	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
231288	chr9	130033201	130033900	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	9639	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
161346	chr3	40314401	40314800	+	0	NA	Intergenic	Intergenic	4893	NM_005875	10289		NM_005875	ENSG00000114784	EIF1B	GC20	eukaryotic translation initiation factor 1B	protein-coding
54953	chr12	96247101	96247300	+	0	NA	exon (NM_005230, exon 3 of 5)	exon (NM_005230, exon 3 of 5)	-8298	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
105204	chr17	82322421	82323000	+	0	NA	intron (NM_003004, intron 4 of 4)	intron (NM_003004, intron 4 of 4)	-5102	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
5022	chr1	24491951	24492350	+	0	NA	Intergenic	MIRc|SINE|MIR	-10194	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
63214	chr13	113838371	113838950	+	0	NA	intron (NR_044995, intron 4 of 4)	intron (NR_044995, intron 4 of 4)	23050	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
49050	chr12	14394441	14395440	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	9659	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
120276	chr19	43425551	43425930	+	0	NA	Intergenic	Intergenic	10850	NM_001130011	83639		NM_031451	ENSG00000131126	TEX101	CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP	testis expressed 101	protein-coding
112485	chr19	6419871	6420230	+	0	NA	intron (NM_001366300, intron 6 of 19)	intron (NM_001366300, intron 6 of 19)	-3539	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
235652	chrX	48526971	48527680	+	0	NA	intron (NM_006579, intron 4 of 4)	intron (NM_006579, intron 4 of 4)	5517	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
189822	chr5	177022121	177023650	+	0	NA	exon (NM_012279, exon 1 of 7)	exon (NM_012279, exon 1 of 7)	189	NM_001308214	23567		NM_012279	ENSG00000113761	ZNF346	JAZ|Zfp346	zinc finger protein 346	protein-coding
121968	chr19	48485451	48485830	+	0	NA	3' UTR (NM_001080434, exon 16 of 16)	3' UTR (NM_001080434, exon 16 of 16)	16271	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
141130	chr2	239132051	239132230	+	0	NA	intron (NM_001378414, intron 11 of 26)	intron (NM_001378414, intron 11 of 26)	-46214	NR_039643	100616493		NR_039643	ENSG00000264810	MIR4441	-	microRNA 4441	ncRNA
27258	chr10	29702471	29703280	+	0	NA	intron (NM_001323599, intron 1 of 38)	intron (NM_001323599, intron 1 of 38)	32926	NM_003174	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
135009	chr2	153519201	153519400	+	0	NA	Intergenic	L3b|LINE|CR1	-40538	NM_019845	56475		NM_019845	ENSG00000177519	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator homolog	protein-coding
12186	chr1	100371901	100372450	+	0	NA	intron (NM_001319210, intron 2 of 16)	Tigger1|DNA|TcMar-Tigger	19669	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
205007	chr7	6477321	6477580	+	0	NA	intron (NM_006854, intron 1 of 4)	intron (NM_006854, intron 1 of 4)	6702	NM_001100603	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
237838	chrX	130086671	130087780	+	0	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	23272	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
76699	chr15	75759721	75759980	+	0	NA	Intergenic	MIRc|SINE|MIR	2465	NR_036198	100423035		NR_036198	ENSG00000284385	MIR4313	-	microRNA 4313	ncRNA
115928	chr19	16622671	16623150	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	5294	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
23793	chr1	234212871	234213400	+	0	NA	intron (NM_173508, intron 2 of 7)	intron (NM_173508, intron 2 of 7)	-1076	NM_001300845	148641		NM_173508	ENSG00000183780	SLC35F3	-	solute carrier family 35 member F3	protein-coding
11582	chr1	91547721	91549900	+	0	NA	Intergenic	L2c|LINE|L2	47702	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
35553	chr11	1638971	1639450	+	0	NA	Intergenic	Intergenic	9407	NM_001001480	439915		NM_001001480	ENSG00000185940	KRTAP5-5	KRTAP5-11|KRTAP5.5	keratin associated protein 5-5	protein-coding
40015	chr11	62662471	62662630	+	0	NA	TTS (NR_104414)	TTS (NR_104414)	2660	NM_001286086	102288414		NM_001286086	ENSG00000278615	C11orf98	C11orf48	chromosome 11 open reading frame 98	protein-coding
29325	chr10	69392001	69392980	+	0	NA	intron (NM_033498, intron 18 of 20)	intron (NM_033498, intron 18 of 20)	24428	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
73833	chr15	49185371	49185900	+	0	NA	intron (NR_147895, intron 1 of 10)	L1PA16|LINE|L1	15388	NM_002044	2585		NM_002044	ENSG00000156958	GALK2	GK2	galactokinase 2	protein-coding
72353	chr15	31340201	31340800	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	13665	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
192171	chr6	17635021	17635580	+	0	NA	intron (NM_001278209, intron 17 of 22)	AluY|SINE|Alu	34998	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
29473	chr10	70560651	70560750	+	0	NA	intron (NM_014431, intron 18 of 19)	intron (NM_014431, intron 18 of 19)	42041	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
223042	chr8	143368171	143370530	+	0	NA	promoter-TSS (NR_026785)	promoter-TSS (NR_026785)	474	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
17170	chr1	156216251	156216880	+	0	NA	intron (NM_001199664, intron 1 of 4)	CpG	3577	NM_001199653	11243		NM_007221	ENSG00000160783	PMF1	-	polyamine modulated factor 1	protein-coding
50053	chr12	44648051	44648350	+	0	NA	intron (NM_001145108, intron 13 of 19)	intron (NM_001145108, intron 13 of 19)	227461	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
187283	chr5	141562351	141563050	+	0	NA	intron (NR_038333, intron 2 of 2)	intron (NR_038333, intron 2 of 2)	4389	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
178646	chr4	152398251	152398350	+	0	NA	intron (NM_033632, intron 2 of 11)	intron (NM_033632, intron 2 of 11)	-15771	NM_001013415	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
5117	chr1	24875371	24875530	+	0	NA	Intergenic	Intergenic	43966	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
223199	chr8	143580571	143581180	+	0	NA	intron (NM_032378, intron 7 of 9)	intron (NM_032378, intron 7 of 9)	-2545	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
11318	chr1	89363021	89364080	+	0	NA	promoter-TSS (NM_001320257)	promoter-TSS (NM_001320257)	-327	NM_001320257	163351		NM_198460	ENSG00000183347	GBP6	-	guanylate binding protein family member 6	protein-coding
163093	chr3	50104351	50104950	+	0	NA	intron (NR_036627, intron 7 of 23)	AluJr|SINE|Alu	-3662	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
172824	chr4	3073441	3075800	+	0	NA	promoter-TSS (NR_045414)	promoter-TSS (NR_045414)	-61	NM_002111	3064		NM_002111	ENSG00000197386	HTT	HD|IT15|LOMARS	huntingtin	protein-coding
187912	chr5	148844121	148845140	+	0	NA	Intergenic	MIR3|SINE|MIR	18019	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
56351	chr12	113069971	113070800	+	0	NA	intron (NM_004416, intron 2 of 9)	intron (NM_004416, intron 2 of 9)	13655	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
33001	chr10	110569471	110570200	+	0	NA	intron (NM_005445, intron 2 of 28)	intron (NM_005445, intron 2 of 28)	2140	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
215584	chr7	158849871	158850230	+	0	NA	intron (NM_001350914, intron 1 of 24)	MER52C|LTR|ERV1	-6508	NM_018051	55112		NM_018051	ENSG00000126870	DYNC2I1	CFAP163|DIC6|FAP163|SRPS6|SRTD8|WDR60	dynein 2 intermediate chain 1	protein-coding
151131	chr21	44894271	44894600	+	0	NA	intron (NM_001127491, intron 9 of 15)	intron (NM_001127491, intron 9 of 15)	-20532	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
213621	chr7	139582871	139583230	+	0	NA	intron (NM_022740, intron 13 of 14)	intron (NM_022740, intron 13 of 14)	59365	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
56896	chr12	120335421	120335930	+	0	NA	Intergenic	LTR13|LTR|ERVK	-7896	NM_000928	5319		NM_000928	ENSG00000170890	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2 group IB	protein-coding
121996	chr19	48558351	48558650	+	0	NA	intron (NM_177973, intron 1 of 6)	CpG	6328	NM_177973	6820		NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
140667	chr2	234023751	234023850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-26902	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
2337	chr1	9203451	9204530	+	0	NA	Intergenic	MIR3|SINE|MIR	-21652	NR_132742	106614088		NR_132742	ENSG00000228526	MIR34AHG	lnc34a	MIR34A host gene	ncRNA
138388	chr2	204111201	204111450	+	0	NA	Intergenic	Intergenic	174562	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123588	chr19	54467301	54467730	+	0	NA	intron (NM_145057, intron 2 of 2).4	intron (NM_145057, intron 2 of 2).4	-3737	NM_001301782	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
106613	chr18	22337201	22338400	+	0	NA	Intergenic	Intergenic	80115	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
233673	chrX	1157551	1157880	+	0	NA	Intergenic	Intergenic	54934	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
135303	chr2	160278451	160278800	+	0	NA	exon (NM_002897, exon 11 of 14)	exon (NM_002897, exon 11 of 14)	-6730	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
82825	chr16	21492701	21493280	+	0	NA	intron (NR_027155, intron 1 of 28)	L2|LINE|L2	-8536	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
38573	chr11	46113021	46113730	+	0	NA	intron (NR_147890, intron 1 of 18)	intron (NR_147890, intron 1 of 18)	7444	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
223924	chr9	507721	507980	+	0	NA	intron (NM_001354332, intron 1 of 11)	AluSc|SINE|Alu	3155	NM_015158	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
124241	chr19	57406451	57406800	+	0	NA	Intergenic	L1M2|LINE|L1	-4536	NM_006959	7565		NM_006959	ENSG00000186272	ZNF17	HPF3|KOX10	zinc finger protein 17	protein-coding
63722	chr14	21206071	21206930	+	0	NA	promoter-TSS (NR_038970)	promoter-TSS (NR_038970)	400	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
163399	chr3	50519221	50519950	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-15341	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
45685	chr11	119050471	119050800	+	0	NA	intron (NM_006389, intron 14 of 25)	AluJo|SINE|Alu	6570	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
158107	chr22	50017821	50018100	+	0	NA	TTS (NM_001350317)	TTS (NM_001350317)	-5195	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
236684	chrX	77622721	77622980	+	0	NA	intron (NM_138270, intron 18 of 33)	intron (NM_138270, intron 18 of 33)	163366	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
71436	chr14	105677551	105678100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5018	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
173797	chr4	17640951	17641430	+	0	NA	intron (NM_015688, intron 13 of 17)	AluSz|SINE|Alu	26549	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
131318	chr2	96126201	96126680	+	0	NA	intron (NM_001002036, intron 8 of 8)	L1MB8|LINE|L1	-9869	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
98420	chr17	46641921	46642430	+	0	NA	intron (NR_040116, intron 6 of 19).2	intron (NR_040116, intron 6 of 19).2	51441	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
44727	chr11	111841451	111842030	+	0	NA	intron (NM_001352418, intron 8 of 13)	intron (NM_001352418, intron 8 of 13)	29541	NM_001352419	79796		NM_024740	ENSG00000086848	ALG9	CDG1L|DIBD1|GIKANIS|LOH11CR1J	ALG9 alpha-1,2-mannosyltransferase	protein-coding
233774	chrX	1419321	1419880	+	0	NA	intron (NM_001173473, intron 9 of 12).2	intron (NM_001173473, intron 9 of 12).2	19069	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
6644	chr1	28935871	28936230	+	0	NA	intron (NM_001376013, intron 1 of 20)	L1MC3|LINE|L1	21474	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
109667	chr19	1019851	1020300	+	0	NA	intron (NM_033420, intron 1 of 9)	intron (NM_033420, intron 1 of 9)	1048	NM_001033026	91304		NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
106714	chr18	23469251	23469350	+	0	NA	intron (NR_145477, intron 7 of 12)	intron (NR_145477, intron 7 of 12)	16013	NR_145477	8780		NM_003831	ENSG00000101782	RIOK3	SUDD	RIO kinase 3	protein-coding
37191	chr11	14276621	14277150	+	0	NA	Intergenic	AluSg7|SINE|Alu	81600	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
152666	chr22	21585801	21586250	+	0	NA	intron (NR_046082, intron 1 of 3)	AluJo|SINE|Alu	18311	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
72634	chr15	38474121	38474680	+	0	NA	intron (NM_173611, intron 6 of 7)	intron (NM_173611, intron 6 of 7)	20273	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
236783	chrX	79096051	79097030	+	0	NA	Intergenic	Intergenic	-48148	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
22049	chr1	211133551	211134600	+	0	NA	promoter-TSS (NR_046784)	promoter-TSS (NR_046784)	73	NM_002238	3756		NM_002238	ENSG00000143473	KCNH1	EAG|EAG1|K(V)10.1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG|hEAG1	potassium voltage-gated channel subfamily H member 1	protein-coding
116261	chr19	17624021	17624280	+	0	NA	intron (NM_001080421, intron 34 of 41)	AluSx1|SINE|Alu	64049	NM_001080421	23025		NM_001080421	ENSG00000130477	UNC13A	Munc13-1	unc-13 homolog A	protein-coding
237467	chrX	119775851	119776150	+	0	NA	Intergenic	L2c|LINE|L2	11484	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
107469	chr18	46968751	46969050	+	0	NA	intron (NM_001353908, intron 3 of 11)	intron (NM_001353908, intron 3 of 11)	22065	NM_001367621	83473		NM_031303	ENSG00000167216	KATNAL2	-	katanin catalytic subunit A1 like 2	protein-coding
86115	chr16	57664371	57664730	+	0	NA	3' UTR (NM_001290144, exon 14 of 14)	3' UTR (NM_001290144, exon 14 of 14)	-3756	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
121640	chr19	47470071	47470700	+	0	NA	intron (NM_015063, intron 1 of 9)	(AC)n|Simple_repeat|Simple_repeat	1508	NM_015063	6543		NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
110489	chr19	2037251	2037350	+	0	NA	TTS (NM_017572)	TTS (NM_017572)	13944	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
216552	chr8	21899351	21899650	+	0	NA	Intergenic	Intergenic	14190	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
221146	chr8	119637001	119637200	+	0	NA	intron (NM_001040092, intron 2 of 24)	intron (NM_001040092, intron 2 of 24)	1739	NM_001130863	5168		NM_006209	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
37898	chr11	34063601	34064430	+	0	NA	intron (NM_203364, intron 2 of 17)	AluSp|SINE|Alu	12284	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
104416	chr17	81060971	81061330	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	3416	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
216687	chr8	22160851	22161150	+	0	NA	promoter-TSS (NM_003018)	promoter-TSS (NM_003018)	-798	NM_001317778	6440		NM_003018	ENSG00000168484	SFTPC	BRICD6|PSP-C|SFTP2|SMDP2|SP-C|SP5	surfactant protein C	protein-coding
159407	chr3	13481721	13481980	+	0	NA	intron (NM_024827, intron 2 of 9)	intron (NM_024827, intron 2 of 9)	1544	NM_001136041	79885		NM_024827	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
102406	chr17	75596301	75596580	+	0	NA	intron (NM_001309242, intron 11 of 62)	intron (NM_001309242, intron 11 of 62)	8382	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
126900	chr2	32375251	32375550	+	0	NA	intron (NM_016252, intron 1 of 73)	FLAM_A|SINE|Alu	18184	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
188236	chr5	151022221	151022950	+	0	NA	intron (NM_001329790, intron 2 of 5)	intron (NM_001329790, intron 2 of 5)	1994	NM_002084	2878		NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
157959	chr22	49810001	49810780	+	0	NA	intron (NM_001304808, intron 2 of 12)	intron (NM_001304808, intron 2 of 12)	13941	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
220462	chr8	100416951	100417430	+	0	NA	Intergenic	Intergenic	34427	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
158066	chr22	49957001	49957400	+	0	NA	Intergenic	Intergenic	-3572	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
124374	chr19	58378051	58378700	+	0	NA	intron (NM_138466, intron 1 of 2)	intron (NM_138466, intron 1 of 2)	2655	NR_049780	116412		NM_138466	ENSG00000152475	ZNF837	-	zinc finger protein 837	protein-coding
189926	chr5	177383821	177384230	+	0	NA	promoter-TSS (NM_001167579)	promoter-TSS (NM_001167579)	-409	NM_001167579	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
72135	chr15	28993821	28995330	+	0	NA	promoter-TSS (NM_001353794).3	promoter-TSS (NM_001353794).3	-952	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
205198	chr7	7721201	7721400	+	0	NA	intron (NM_001302350, intron 3 of 4)	intron (NM_001302350, intron 3 of 4)	-2693	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
86775	chr16	67721771	67722130	+	0	NA	Intergenic	AluJb|SINE|Alu	-2634	NM_001243650	81577		NM_030819	ENSG00000141098	GFOD2	-	Gfo/Idh/MocA-like oxidoreductase domain containing 2	protein-coding
38322	chr11	44110151	44110500	+	0	NA	intron (NM_000401, intron 3 of 13)	intron (NM_000401, intron 3 of 13)	14128	NM_000401	2132		NM_000401	ENSG00000151348	EXT2	SOTV|SSMS	exostosin glycosyltransferase 2	protein-coding
168827	chr3	152242571	152242730	+	0	NA	promoter-TSS (NM_001376845)	promoter-TSS (NM_001376845)	-982	NM_001376839	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
50761	chr12	49024251	49024350	+	0	NA	intron (NM_003482, intron 51 of 54)	intron (NM_003482, intron 51 of 54)	-5524	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
227746	chr9	93088021	93088280	+	0	NA	Intergenic	Intergenic	-8067	NM_032310	84270		NM_032310	ENSG00000165233	CARD19	BinCARD|C9orf89	caspase recruitment domain family member 19	protein-coding
236061	chrX	56385301	56385750	+	0	NA	Intergenic	MER84|LTR|ERV1	152367	NR_136704	11279		NM_007250	ENSG00000102349	KLF8	BKLF3|ZNF741	KLF transcription factor 8	protein-coding
98221	chr17	46145701	46146580	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	46642	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
126650	chr2	28952651	28952950	+	0	NA	Intergenic	Intergenic	24817	NR_145755	109617012		NR_145755	ENSG00000265706	SNORD53B	-	small nucleolar RNA, C/D box 53B	snoRNA
235806	chrX	49189621	49189880	+	0	NA	intron (NM_003179, intron 6 of 6)	AluJr|SINE|Alu	-3377	NM_006150	4007		NM_006150	ENSG00000012211	PRICKLE3	LMO6|LOAM|LOAS|Pk3	prickle planar cell polarity protein 3	protein-coding
233145	chr9	137164121	137164750	+	0	NA	intron (NM_000832, intron 18 of 18)	intron (NM_000832, intron 18 of 18)	4835	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
157609	chr22	46045901	46046600	+	0	NA	Intergenic	Intergenic	-1382	NR_027036	100271722		NR_027036		LINC00899	-	long intergenic non-protein coding RNA 899	ncRNA
86614	chr16	67392321	67392600	+	0	NA	intron (NM_015964, intron 1 of 3)	intron (NM_015964, intron 1 of 3)	1038	NM_015964	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
209281	chr7	75925851	75926150	+	0	NA	intron (NM_001382657, intron 2 of 16)	intron (NM_001382657, intron 2 of 16)	10803	NR_039795	100616270		NR_039795	ENSG00000284334	MIR4651	mir-4651	microRNA 4651	ncRNA
226156	chr9	63815001	63816080	+	0	NA	intron (NR_146625, intron 1 of 1)	CpG	2599	NR_146626	203274		NR_146625		LINC00537	-	long intergenic non-protein coding RNA 537	ncRNA
211542	chr7	105391801	105393280	+	0	NA	Intergenic	AluSz|SINE|Alu	-3150	NM_001350740	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
31038	chr10	88889371	88889530	+	0	NA	intron (NM_020799, intron 1 of 10)	L1ME4a|LINE|L1	9205	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
71103	chr14	104887851	104888150	+	0	NA	intron (NM_001112726, intron 12 of 18)	intron (NM_001112726, intron 12 of 18)	22686	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
30736	chr10	84155651	84156130	+	0	NA	Intergenic	Intergenic	16186	NR_134505	642934		NR_134505	ENSG00000285972	CERNA2	HOST2|lncRNA-HOST2	competing endogenous lncRNA 2 for microRNA let-7b	ncRNA
95130	chr17	35041171	35041730	+	0	NA	intron (NR_037713, intron 1 of 6)	L2|LINE|L2	22257	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
187531	chr5	142610901	142611350	+	0	NA	intron (NM_001354958, intron 3 of 4)	intron (NM_001354958, intron 3 of 4)	10209	NM_001257212	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
133995	chr2	130836651	130837830	+	0	NA	intron (NM_001375900, intron 1 of 12)	CpG	326	NM_001375901	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
200484	chr6	135236851	135236950	+	0	NA	Intergenic	Intergenic	-2260	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
191820	chr6	14731601	14732030	+	0	NA	Intergenic	Intergenic	-446361	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
220575	chr8	100812401	100812600	+	0	NA	Intergenic	MER51B|LTR|ERV1	-90412	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
1243	chr1	2287521	2287930	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	59406	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
43321	chr11	76371101	76371350	+	0	NA	intron (NM_004705, intron 1 of 4)	L2b|LINE|L2	9740	NR_130898	5612		NM_004705	ENSG00000137492	THAP12	DAP4|P52rIPK|PRKRIR|THAP0	THAP domain containing 12	protein-coding
217464	chr8	28769701	28770250	+	0	NA	exon (NM_001145159, exon 15 of 16)	exon (NM_001145159, exon 15 of 16)	68474	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
187816	chr5	146667521	146667830	+	0	NA	intron (NR_073526, intron 4 of 8)	intron (NR_073526, intron 4 of 8)	-151485	NM_194251	134391		NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|GPCR-2037|PGR7	G protein-coupled receptor 151	protein-coding
51543	chr12	52361201	52362150	+	0	NA	intron (NM_002283, intron 7 of 8)	intron (NM_002283, intron 7 of 8)	2947	NM_001300810	3891		NM_002283	ENSG00000135443	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
105948	chr18	3624551	3625230	+	0	NA	intron (NM_001242765, intron 4 of 8)	intron (NM_001242765, intron 4 of 8)	21153	NR_119377	84777		NM_032691		DLGAP1-AS2	DLPAP1-AS2	DLGAP1 antisense RNA 2	ncRNA
10584	chr1	67347751	67347850	+	0	NA	intron (NM_001374259, intron 9 of 16)	intron (NM_001374259, intron 9 of 16)	39927	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
81010	chr16	4182401	4182600	+	0	NA	Intergenic	AluSx4|SINE|Alu	59580	NM_001098814	6345		NM_001098814	ENSG00000185739	SRL	SAR	sarcalumenin	protein-coding
154535	chr22	36153621	36154180	+	0	NA	intron (NM_030644, intron 1 of 4)	MER4B|LTR|ERV1	6855	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
184869	chr5	112417951	112418500	+	0	NA	intron (NM_022140, intron 1 of 22)	intron (NM_022140, intron 1 of 22)	1052	NR_144931	64097		NM_022140	ENSG00000129595	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
180367	chr5	7194151	7194250	+	0	NA	Intergenic	L1PA2|LINE|L1	75154	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
197324	chr6	73285771	73285930	+	0	NA	intron (NR_027005, intron 3 of 4)	intron (NR_027005, intron 3 of 4)	-22654	NM_030568	80759		NM_030568	ENSG00000135314	KHDC1	C6orf147|C6orf148|Em:AC019205.8|NDG1|bA257K9.4	KH domain containing 1	protein-coding
36349	chr11	3912801	3913600	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluJb|SINE|Alu	57138	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
130413	chr2	85341221	85341830	+	0	NA	TTS (NM_017750)	TTS (NM_017750)	13003	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
45184	chr11	117315501	117316700	+	0	NA	5' UTR (NM_138971, exon 1 of 9)	5' UTR (NM_138971, exon 1 of 9)	156	NM_138972	23621		NM_012104	ENSG00000186318	BACE1	ASP2|BACE|HSPC104	beta-secretase 1	protein-coding
119501	chr19	40476301	40476700	+	0	NA	intron (NM_020971, intron 2 of 35)	intron (NM_020971, intron 2 of 35)	9499	NM_020971	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
209000	chr7	74268901	74269100	+	0	NA	Intergenic	AluSq4|SINE|Alu	-14542	NM_002914	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
129554	chr2	69831521	69832180	+	0	NA	intron (NM_178439, intron 1 of 13)	AluJb|SINE|Alu	2190	NM_178439	64395		NM_178439	ENSG00000087338	GMCL1	BTBD13|GCL|GCL1|SPATA29	germ cell-less 1, spermatogenesis associated	protein-coding
216719	chr8	22370001	22370500	+	0	NA	intron (NM_001135153, intron 1 of 8)	intron (NM_001135153, intron 1 of 8)	2712	NM_001135153	23516		NM_015359	ENSG00000104635	SLC39A14	HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
23244	chr1	227790971	227791750	+	0	NA	non-coding (NR_168380, exon 2 of 2)	non-coding (NR_168380, exon 2 of 2)	2840	NR_168384	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
213777	chr7	140698321	140698880	+	0	NA	intron (NM_004546, intron 1 of 3)	L2a|LINE|L2	-1523	NR_024454	100134713		NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
66897	chr14	65211301	65211500	+	0	NA	Intergenic	MER44D|DNA|TcMar-Tigger	10947	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
186188	chr5	134213371	134214080	+	0	NA	intron (NM_002715, intron 1 of 6)	AluJo|SINE|Alu	11829	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
90159	chr17	191821	192650	+	0	NA	Intergenic	CpG	-4984	NR_104420	100506371		NR_104420		LINC02091	-	long intergenic non-protein coding RNA 2091	ncRNA
83788	chr16	28753101	28753710	+	0	NA	intron (NM_001287250, intron 1 of 6)	intron (NM_001287250, intron 1 of 6)	970	NM_001287250	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
17710	chr1	158793621	158793950	+	0	NA	Intergenic	L1PBb|LINE|L1	-16150	NM_001005278	81442		NM_001005278	ENSG00000188340	OR6N2	OR1-23	olfactory receptor family 6 subfamily N member 2	protein-coding
222579	chr8	140632871	140633030	+	0	NA	intron (NM_012154, intron 1 of 18)	AluSc|SINE|Alu	2683	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
163480	chr3	50664351	50664530	+	0	NA	Intergenic	AluY|SINE|Alu	-10487	NM_004947	1795		NM_004947	ENSG00000088538	DOCK3	MOCA|NEDIDHA|PBP	dedicator of cytokinesis 3	protein-coding
19853	chr1	183022601	183023500	+	0	NA	promoter-TSS (NM_002293)	promoter-TSS (NM_002293)	-370	NM_002293	3915		NM_002293	ENSG00000135862	LAMC1	LAMB2	laminin subunit gamma 1	protein-coding
2641	chr1	10377451	10377780	+	0	NA	3' UTR (NM_001365951, exon 49 of 49)	3' UTR (NM_001365951, exon 49 of 49)	-21449	NM_002631	5226		NM_002631	ENSG00000142657	PGD	6PGD	phosphogluconate dehydrogenase	protein-coding
147730	chr20	62390571	62391100	+	0	NA	3' UTR (NM_031215, exon 10 of 10)	3' UTR (NM_031215, exon 10 of 10)	3732	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
89442	chr16	88969071	88969230	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	8057	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
215209	chr7	155817601	155817800	+	0	NA	Intergenic	Intergenic	-5237	NM_000193	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
3814	chr1	16759401	16760650	+	0	NA	intron (NM_001271733, intron 5 of 14)	CpG-531	4455	NM_001271733	11223		NM_001271733	ENSG00000186715	MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P|MST1P7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1 like (pseudogene)	pseudo
203641	chr7	971821	972280	+	0	NA	intron (NM_001031617, intron 2 of 2)	intron (NM_001031617, intron 2 of 2)	3499	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
26997	chr10	26798451	26798550	+	0	NA	intron (NR_145410, intron 2 of 11)	MLT1D|LTR|ERVL-MaLR	62458	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
70256	chr14	101704971	101705150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-25377	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
172046	chr4	1010501	1010900	+	0	NA	promoter-TSS (NM_001004356)	promoter-TSS (NM_001004356)	-926	NM_001004356	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
157731	chr22	46586401	46586600	+	0	NA	intron (NM_001366660, intron 1 of 17)	intron (NM_001366660, intron 1 of 17)	9412	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
183255	chr5	76423621	76424080	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	20565	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
109311	chr19	577621	578100	+	0	NA	exon (NM_001728, exon 2 of 9)	exon (NM_001728, exon 2 of 9)	5264	NM_198589	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
193591	chr6	30692101	30692680	+	0	NA	promoter-TSS (NM_007243)	promoter-TSS (NM_007243)	-970	NM_007243	11270		NM_007243	ENSG00000137404	NRM	NRM29	nurim	protein-coding
121892	chr19	48367351	48368300	+	0	NA	intron (NM_012451, intron 2 of 4)	intron (NM_012451, intron 2 of 4)	3458	NM_012451	23546		NM_012451	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding
62019	chr13	84201051	84201250	+	0	NA	intron (NR_046871, intron 1 of 6)	intron (NR_046871, intron 1 of 6)	60548	NR_046871	100874128		NR_046871		LINC00333	NCRNA00333	long intergenic non-protein coding RNA 333	ncRNA
234622	chrX	19849651	19849950	+	0	NA	intron (NM_001353892, intron 1 of 17)	L1MC5|LINE|L1	-16649	NM_001353895	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
184735	chr5	109692571	109693380	+	0	NA	intron (NM_002372, intron 1 of 21)	MER1B|DNA|hAT-Charlie	3609	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
44845	chr11	114102021	114102480	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	39039	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
145293	chr20	41038051	41038550	+	0	NA	intron (NM_003286, intron 2 of 20)	MIRb|SINE|MIR	9478	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
7118	chr1	32172601	32173050	+	0	NA	3' UTR (NM_012316, exon 14 of 14)	3' UTR (NM_012316, exon 14 of 14)	-6850	NM_175852	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
5171	chr1	24934321	24934730	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-4249	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
78613	chr15	93986821	93987350	+	0	NA	intron (NR_120320, intron 3 of 8)	MER63D|DNA|hAT-Blackjack	86384	NR_120323	101927129		NR_120322	ENSG00000258785	LINC01580	-	long intergenic non-protein coding RNA 1580	ncRNA
235587	chrX	47571971	47572280	+	0	NA	TTS (NM_001654)	TTS (NM_001654)	-10311	NM_003254	7076		NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP|TIMP-1	TIMP metallopeptidase inhibitor 1	protein-coding
105589	chr18	512951	513060	+	0	NA	intron (NR_136505, intron 2 of 2)	SVA_E|Retroposon|SVA	2289	NR_136505	105376854		NR_136505	ENSG00000264265	LINC01925	-	long intergenic non-protein coding RNA 1925	ncRNA
196479	chr6	43582521	43582780	+	0	NA	intron (NM_006502, intron 2 of 10)	AluJr|SINE|Alu	6465	NM_001291970	5429		NM_006502	ENSG00000170734	POLH	RAD30|RAD30A|XP-V|XPV	DNA polymerase eta	protein-coding
193417	chr6	30452571	30453030	+	0	NA	Intergenic	Intergenic	-36709	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
9473	chr1	50874471	50874630	+	0	NA	intron (NM_007051, intron 1 of 18)	AluJr4|SINE|Alu	85717	NM_007051	11124		NM_007051	ENSG00000185104	FAF1	CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1	Fas associated factor 1	protein-coding
110390	chr19	1937121	1937930	+	0	NA	Intergenic	Intergenic	-3647	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
58628	chr12	132499671	132499850	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	-5646	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
150310	chr21	42003251	42003680	+	0	NA	intron (NM_001320731, intron 1 of 3)	intron (NM_001320731, intron 1 of 3)	-5729	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
114958	chr19	13995971	13996150	+	0	NA	intron (NM_002918, intron 1 of 20)	AluSx|SINE|Alu	10260	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
175132	chr4	55345971	55347000	+	0	NA	exon (NM_024592, exon 1 of 5)	exon (NM_024592, exon 1 of 5)	243	NM_024592	79644		NM_024592	ENSG00000128039	SRD5A3	CDG1P|CDG1Q|KRIZI|S5AR|S5AR 3|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
158098	chr22	50008351	50008650	+	0	NA	intron (NM_001371417, intron 2 of 14)	intron (NM_001371417, intron 2 of 14)	4265	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
118018	chr19	34179671	34179830	+	0	NA	intron (NM_001384434, intron 1 of 9).2	intron (NM_001384434, intron 1 of 9).2	7246	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
11485	chr1	90724471	90724630	+	0	NA	Intergenic	Intergenic	-7248	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
218970	chr8	61687251	61687570	+	0	NA	intron (NM_032466, intron 1 of 13)	intron (NM_032466, intron 1 of 13)	2401	NM_020164	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
167020	chr3	126354621	126354880	+	0	NA	intron (NM_014079, intron 1 of 2)	intron (NM_014079, intron 1 of 2)	2658	NM_014079	28999		NM_014079	ENSG00000163884	KLF15	KKLF	KLF transcription factor 15	protein-coding
166356	chr3	112987471	112987830	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-3303	NM_138485	29083		NM_014170	ENSG00000163607	GTPBP8	HSPC135	GTP binding protein 8 (putative)	protein-coding
64604	chr14	30557801	30558130	+	0	NA	intron (NR_151720, intron 3 of 3)	AluY|SINE|Alu	-1158	NM_001308097	55632		NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
105660	chr18	2587951	2588330	+	0	NA	intron (NM_006101, intron 8 of 16)	intron (NM_006101, intron 8 of 16)	16583	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
69661	chr14	97993721	97995100	+	0	NA	Intergenic	Intergenic	-16286	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
83123	chr16	22533651	22534700	+	0	NA	exon (NM_001135865, exon 7 of 7)	exon (NM_001135865, exon 7 of 7)	-11523	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
168545	chr3	146497571	146498470	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2029	NM_001199979	57047		NM_020359	ENSG00000163746	PLSCR2	-	phospholipid scramblase 2	protein-coding
82747	chr16	21411371	21411800	+	0	NA	intron (NM_130464, intron 3 of 12)	AluSg7|SINE|Alu	13793	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
140311	chr2	232486751	232487130	+	0	NA	intron (NM_001290787, intron 1 of 17)	CpG-17121	894	NM_001290787	9427		NM_004826	ENSG00000171551	ECEL1	DA5D|DINE|ECEX|XCE	endothelin converting enzyme like 1	protein-coding
205166	chr7	7261871	7262030	+	0	NA	intron (NR_108073, intron 2 of 3)	LTR8|LTR|ERV1	6796	NR_108073	101927354		NR_108073	ENSG00000230825	LINC03016	-	long intergenic non-protein coding RNA 3016	ncRNA
114608	chr19	12961651	12961950	+	0	NA	Intergenic	AluY|SINE|Alu	-4577	NM_052850	90480		NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1|mL64	GADD45G interacting protein 1	protein-coding
6359	chr1	27830251	27831850	+	0	NA	5' UTR (NM_002713, exon 1 of 6)	5' UTR (NM_002713, exon 1 of 6)	268	NM_138558	5511		NM_002713	ENSG00000117751	PPP1R8	ARD-1|ARD1|NIPP-1|NIPP1|PRO2047	protein phosphatase 1 regulatory subunit 8	protein-coding
111088	chr19	3183771	3184000	+	0	NA	Intergenic	Intergenic	-2045	NM_001321463	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
43091	chr11	74784451	74784750	+	0	NA	intron (NM_001098638, intron 1 of 5)	MER68|LTR|ERVL	35751	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
182609	chr5	66151621	66152030	+	0	NA	intron (NM_139168, intron 1 of 12)	intron (NM_139168, intron 1 of 12)	6990	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
172373	chr4	1754101	1755130	+	0	NA	Intergenic	Intergenic	33094	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
144319	chr20	34875101	34875350	+	0	NA	intron (NM_001242393, intron 1 of 17)	(GGT)n|Simple_repeat|Simple_repeat	262	NM_001242393	55902		NM_018677	ENSG00000131069	ACSS2	ACAS2|ACECS|ACS|ACSA|AceCS1|dJ1161H23.1	acyl-CoA synthetase short chain family member 2	protein-coding
130295	chr2	84906701	84907750	+	0	NA	TTS (NM_021103)	TTS (NM_021103)	1569	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
87303	chr16	70162751	70163050	+	0	NA	TTS (NM_001322117)	TTS (NM_001322117)	10548	NR_126007	400541		NR_126007	ENSG00000247228	LOC400541	-	uncharacterized LOC400541	ncRNA
147366	chr20	58405251	58405550	+	0	NA	intron (NM_001195677, intron 1 of 2)	L2a|LINE|L2	16171	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
15947	chr1	151831821	151832080	+	0	NA	promoter-TSS (NM_005060)	promoter-TSS (NM_005060)	-148	NM_005060	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
112437	chr19	6362401	6363680	+	0	NA	intron (NM_006012, intron 3 of 5)	intron (NM_006012, intron 3 of 5)	1509	NM_006012	8192		NM_006012	ENSG00000125656	CLPP	DFNB81|PRLTS3	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding
91729	chr17	6653701	6654100	+	0	NA	TTS (NM_001105520)	TTS (NM_001105520)	-1549	NR_039874	100616466		NR_039874	ENSG00000283301	MIR4520-2	MIR4520B|hsa-mir-4520-2|mir-4520-2	microRNA 4520-2	ncRNA
170075	chr3	182937721	182938050	+	0	NA	TTS (NM_001308101)	TTS (NM_001308101)	42653	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
95721	chr17	38569221	38569680	+	0	NA	intron (NM_025248, intron 2 of 18)	intron (NM_025248, intron 2 of 18)	36502	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
164126	chr3	56708951	56709250	+	0	NA	Intergenic	AluSc5|SINE|Alu	-25835	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
182959	chr5	71289071	71290500	+	0	NA	promoter-TSS (NR_146391)	promoter-TSS (NR_146391)	54	NR_146391	653080		NR_146391		GUSBP16	-	GUSB pseudogene 16	pseudo
34240	chr10	130160801	130161000	+	0	NA	exon (NM_006541, exon 4 of 11)	exon (NM_006541, exon 4 of 11)	24491	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
106863	chr18	24115071	24115630	+	0	NA	intron (NM_001135993, intron 7 of 13)	intron (NM_001135993, intron 7 of 13)	2023	NM_001292030	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
63154	chr13	113623951	113624280	+	0	NA	intron (NR_026580, intron 4 of 10)	intron (NR_026580, intron 4 of 10)	34083	NM_000705	496		NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting subunit beta	protein-coding
202122	chr6	154793701	154794130	+	0	NA	intron (NM_001286199, intron 6 of 20)	(TG)n|Simple_repeat|Simple_repeat	-59445	NR_036100	100422821		NR_036100	ENSG00000264814	MIR1273C	-	microRNA 1273c	ncRNA
228121	chr9	96645501	96645700	+	0	NA	intron (NM_153698, intron 5 of 5)	AluY|SINE|Alu	9717	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
133482	chr2	119927701	119927900	+	0	NA	intron (NM_002830, intron 13 of 26)	intron (NM_002830, intron 13 of 26)	-85277	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
237929	chrX	132092501	132092700	+	0	NA	intron (NM_194277, intron 5 of 11)	intron (NM_194277, intron 5 of 11)	35420	NM_194277	90167		NM_194277	ENSG00000165694	FRMD7	NYS|NYS1|XIPAN	FERM domain containing 7	protein-coding
115839	chr19	16519121	16519780	+	0	NA	TTS (NM_001288834)	TTS (NM_001288834)	22987	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
107927	chr18	57632601	57632900	+	0	NA	intron (NR_164148, intron 1 of 2)	SVA_D|Retroposon|SVA	2419	NR_164148	100505549		NR_164148	ENSG00000267040	ATP8B1-AS1	-	ATP8B1 antisense RNA 1	ncRNA
74563	chr15	60532771	60533330	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	53872	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
58446	chr12	132066151	132066880	+	0	NA	intron (NM_015409, intron 48 of 52)	intron (NM_015409, intron 48 of 52)	-17768	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
217008	chr8	23171471	23171830	+	0	NA	Intergenic	Intergenic	-7623	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
140817	chr2	236538151	236539730	+	0	NA	Intergenic	Intergenic	-30885	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
71078	chr14	104857001	104857300	+	0	NA	Intergenic	Intergenic	-8118	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
69879	chr14	99319951	99321030	+	0	NA	Intergenic	Intergenic	-48293	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
70776	chr14	103511801	103512000	+	0	NA	Intergenic	AluSg|SINE|Alu	10930	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
119386	chr19	40224201	40224400	+	0	NA	intron (NM_024877, intron 3 of 4)	MIR|SINE|MIR	2389	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
27118	chr10	27745751	27747200	+	0	NA	promoter-TSS (NM_001242702)	promoter-TSS (NM_001242702)	-656	NM_173576	283078		NM_173576	ENSG00000150051	MKX	C10orf48|IFRX|IRXL1	mohawk homeobox	protein-coding
142530	chr20	5006771	5007000	+	0	NA	intron (NM_203327, intron 1 of 16)	intron (NM_203327, intron 1 of 16)	3428	NM_203327	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
227779	chr9	93123821	93124680	+	0	NA	intron (NM_004148, intron 3 of 3)	intron (NM_004148, intron 3 of 3)	10001	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
123872	chr19	55276051	55277500	+	0	NA	intron (NM_001130106, intron 4 of 8)	intron (NM_001130106, intron 4 of 8)	3081	NM_001297600	23640		NM_012267	ENSG00000133265	HSPBP1	FES1	HSPA (Hsp70) binding protein 1	protein-coding
32175	chr10	101569501	101571100	+	0	NA	Intergenic	CpG	17957	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
179257	chr4	175020021	175020350	+	0	NA	Intergenic	L1PA3|LINE|L1	101827	NM_001278127	11086		NM_014269	ENSG00000168594	ADAM29	CT73|svph1	ADAM metallopeptidase domain 29	protein-coding
191571	chr6	11978421	11978680	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	22694	NR_125853	101928253		NR_125853	ENSG00000225102	LOC101928253	-	uncharacterized LOC101928253	ncRNA
95883	chr17	38877021	38878030	+	0	NA	intron (NM_006148, intron 1 of 6)	intron (NM_006148, intron 1 of 6)	7467	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
27811	chr10	37897271	37897630	+	0	NA	Intergenic	L1PA2|LINE|L1	-39347	NM_001352477	57209		NM_021045	ENSG00000198105	ZNF248	bA162G10.3	zinc finger protein 248	protein-coding
137022	chr2	190693251	190693350	+	0	NA	TTS (NM_001321312)	TTS (NM_001321312)	34142	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
21370	chr1	205123901	205124100	+	0	NA	Intergenic	Intergenic	-2022	NM_001193272	5929		NM_005057	ENSG00000117222	RBBP5	RBQ3|SWD1	RB binding protein 5, histone lysine methyltransferase complex subunit	protein-coding
112896	chr19	7633451	7633550	+	0	NA	promoter-TSS (NM_001271830)	promoter-TSS (NM_001271830)	219	NM_174895	126006		NM_174895	ENSG00000174788	PCP2	GPSM4|PCD5	Purkinje cell protein 2	protein-coding
152816	chr22	21861771	21862200	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	5660	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
38092	chr11	35207801	35208180	+	0	NA	intron (NM_001001389, intron 10 of 16)	intron (NM_001001389, intron 10 of 16)	45040	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
60787	chr13	45312551	45313180	+	0	NA	Intergenic	AluSc|SINE|Alu	23582	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
39517	chr11	61072771	61072930	+	0	NA	Intergenic	Intergenic	-21113	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
49589	chr12	27110151	27110250	+	0	NA	Intergenic	Intergenic	-26073	NM_001384983	728858		NM_001080406	ENSG00000214700	C12orf71	-	chromosome 12 open reading frame 71	protein-coding
152531	chr22	20980251	20980350	+	0	NA	intron (NM_001146288, intron 19 of 19)	intron (NM_001146288, intron 19 of 19)	-1997	NM_006767	8216		NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|NS2|SWNTS2	leucine zipper like post translational regulator 1	protein-coding
6889	chr1	31431821	31432380	+	0	NA	intron (NM_178865, intron 8 of 9)	(GATAGGGTG)n|Simple_repeat|Simple_repeat	18287	NM_018565	347735		NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
90357	chr17	1208271	1208800	+	0	NA	intron (NM_001322841, intron 1 of 22)	MamGypLTR3|LTR|Gypsy	21187	NM_001322842	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
109817	chr19	1166371	1167230	+	0	NA	intron (NM_014963, intron 1 of 31)	L3|LINE|CR1	7468	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
72514	chr15	34040671	34040830	+	0	NA	intron (NM_001320917, intron 1 of 1)	AluJb|SINE|Alu	-1546	NM_020371	57099		NM_020371	ENSG00000169857	AVEN	PDCD12	apoptosis and caspase activation inhibitor	protein-coding
110738	chr19	2326571	2326730	+	0	NA	intron (NM_016199, intron 2 of 3)	AluSx|SINE|Alu	1936	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
67911	chr14	74614651	74615200	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-2688	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
47808	chr12	6580751	6581800	+	0	NA	TTS (NR_003012)	TTS (NR_003012)	334	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
8738	chr1	42692701	42693280	+	0	NA	intron (NM_004559, intron 2 of 7)	L1MC1|LINE|L1	9854	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
154652	chr22	36339121	36339930	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	48442	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
211797	chr7	107754671	107755000	+	0	NA	intron (NM_001284291, intron 4 of 5)	intron (NM_001284291, intron 4 of 5)	-10254	NR_144537	101927974		NR_144536	ENSG00000241764	CBLL1-AS1	-	CBLL1 antisense RNA 1	ncRNA
194744	chr6	33863901	33864300	+	0	NA	Intergenic	Intergenic	32807	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
36147	chr11	3136531	3137150	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	28470	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
137944	chr2	201125221	201126000	+	0	NA	intron (NR_147255, intron 1 of 4)	intron (NR_147255, intron 1 of 4)	-3355	NM_001308042	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
175964	chr4	81454451	81454880	+	0	NA	intron (NM_152545, intron 4 of 13)	intron (NM_152545, intron 4 of 13)	17242	NM_152545	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
177177	chr4	108157621	108158230	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	8872	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
2899	chr1	11670721	11670980	+	0	NA	intron (NM_018438, intron 2 of 5)	intron (NM_018438, intron 2 of 5)	6650	NM_018438	26270		NM_018438	ENSG00000116663	FBXO6	FBG2|FBS2|FBX6|Fbx6b	F-box protein 6	protein-coding
234400	chrX	16720901	16721600	+	0	NA	intron (NR_033181, intron 1 of 8)	AluSx|SINE|Alu	1638	NR_033181	94056		NM_032796	ENSG00000169895	SYAP1	BSTA|PRO3113	synapse associated protein 1	protein-coding
28417	chr10	47914171	47914330	+	0	NA	Intergenic	LTR33|LTR|ERVL	-2778	NM_001278795	100996758		NM_001278795	ENSG00000264717	NPY4R2	CH17-360D5.1|NPY4-R|NPY4R|PP1|PPYR1	neuropeptide Y receptor Y4-2	protein-coding
35314	chr11	1031271	1031600	+	0	NA	intron (NM_005961, intron 4 of 32)	intron (NM_005961, intron 4 of 32)	5283	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
135236	chr2	159497201	159497550	+	0	NA	intron (NM_001289975, intron 2 of 35)	intron (NM_001289975, intron 2 of 35)	-117919	NR_110588	643072		NR_110587	ENSG00000224152	BAZ2B-AS1	lnc-BAZ2B	BAZ2B antisense RNA 1	ncRNA
53170	chr12	58883821	58883900	+	0	NA	intron (NM_153377, intron 10 of 18)	intron (NM_153377, intron 10 of 18)	35686	NM_001136051	121227		NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding
182731	chr5	68262621	68262900	+	0	NA	intron (NM_181523, intron 2 of 15)	(ATACATGTAG)n|Simple_repeat|Simple_repeat	-25759	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
59687	chr13	29508071	29508480	+	0	NA	Intergenic	Intergenic	-20525	NR_046378	100874107		NR_046378		MTUS2-AS1	-	MTUS2 antisense RNA 1	ncRNA
207242	chr7	43784401	43784880	+	0	NA	intron (NM_000712, intron 2 of 7)	AluSx1|SINE|Alu	25960	NM_000712	644		NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA|BVRalpha	biliverdin reductase A	protein-coding
148704	chr21	6467351	6468100	+	0	NA	promoter-TSS (NM_001354015)	promoter-TSS (NM_001354015)	-102	NM_001354014	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
29979	chr10	73738371	73738530	+	0	NA	Intergenic	AluSx|SINE|Alu	-5922	NM_004922	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
11296	chr1	89270501	89271000	+	0	NA	intron (NM_001134486, intron 1 of 10)	intron (NM_001134486, intron 1 of 10)	2110	NM_001134486	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
47101	chr12	651021	651350	+	0	NA	intron (NM_016533, intron 1 of 3)	L1MC1|LINE|L1	-7549	NR_160428	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
112868	chr19	7602871	7603030	+	0	NA	intron (NM_020902, intron 1 of 16)	GA-rich|Low_complexity|Low_complexity	7087	NM_001080429	57662		NM_020902	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA|PPP1R80	calmodulin regulated spectrin associated protein family member 3	protein-coding
154902	chr22	37170001	37170650	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	4731	NM_001346223	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
102094	chr17	74975751	74976050	+	0	NA	TTS (NR_110878)	TTS (NR_110878)	-3141	NM_030630	283987		NM_030630	ENSG00000167861	HID1	17orf28|C17orf28|DEE105|DMC1|HID-1	HID1 domain containing	protein-coding
61462	chr13	52191271	52191630	+	0	NA	intron (NR_002816, intron 1 of 8)	AluJb|SINE|Alu	3017	NR_051965	100887750		NR_002816	ENSG00000291010	MRPS31P5	MRPS31P3	mitochondrial ribosomal protein S31 pseudogene 5	pseudo
180861	chr5	32606071	32606430	+	0	NA	Intergenic	AluYm1|SINE|Alu	20693	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
131975	chr2	100178271	100178430	+	0	NA	Intergenic	MER66C|LTR|ERV1	-29904	NR_103730	150577		NM_001102655	ENSG00000232084	LINC01104	-	long intergenic non-protein coding RNA 1104	ncRNA
171621	chr3	197456001	197457250	+	0	NA	Intergenic	CpG	53036	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
196446	chr6	43502701	43503100	+	0	NA	intron (NM_001350563, intron 8 of 10)	intron (NM_001350563, intron 8 of 10)	7443	NM_001012974	221424		NM_001012974	ENSG00000204052	LRRC73	C6orf154	leucine rich repeat containing 73	protein-coding
150163	chr21	38938271	38938650	+	0	NA	promoter-TSS (NR_120405)	promoter-TSS (NR_120405)	-31	NR_120405	400867		NR_120405		ETS2-AS1	-	ETS2 antisense RNA 1	ncRNA
180605	chr5	16458271	16458430	+	0	NA	intron (NM_033414, intron 4 of 5)	intron (NM_033414, intron 4 of 5)	7450	NM_033414	90441		NM_033414	ENSG00000173545	ZNF622	ZPR9	zinc finger protein 622	protein-coding
147398	chr20	58715221	58715480	+	0	NA	non-coding (NR_037945, exon 23 of 23)	non-coding (NR_037945, exon 23 of 23)	22550	NM_024663	79716		NM_024663	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase like 1	protein-coding
46430	chr11	128031551	128032280	+	0	NA	Intergenic	AluSg|SINE|Alu	-176851	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
224326	chr9	6752101	6752300	+	0	NA	intron (NM_001146696, intron 1 of 17)	AluYg6|SINE|Alu	-5773	NM_001353999	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
84676	chr16	30763701	30764100	+	0	NA	intron (NM_014771, intron 4 of 19)	intron (NM_014771, intron 4 of 19)	1578	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
202297	chr6	157217901	157218630	+	0	NA	Intergenic	Intergenic	105254	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
132299	chr2	105173771	105174130	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	29837	NR_136172	105373984		NR_136172	ENSG00000226508	LINC01918	-	long intergenic non-protein coding RNA 1918	ncRNA
85649	chr16	56137301	56137530	+	0	NA	intron (NR_027078, intron 2 of 4)	L2c|LINE|L2	53679	NR_027078	283856		NR_027078	ENSG00000246379	GNAO1-DT	-	GNAO1 divergent transcript	ncRNA
81641	chr16	10938301	10938850	+	0	NA	intron (NM_014015, intron 1 of 1)	intron (NM_014015, intron 1 of 1)	3893	NM_014015	28955		NM_014015	ENSG00000182108	DEXI	MYLE	Dexi homolog	protein-coding
97074	chr17	42384851	42384950	+	0	NA	intron (NM_001369516, intron 1 of 23)	intron (NM_001369516, intron 1 of 23)	3542	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
219216	chr8	66679551	66679850	+	0	NA	intron (NR_161216, intron 2 of 2)	intron (NR_161216, intron 2 of 2)	12104	NM_001204173	100533105		NM_001204173	ENSG00000288602	C8orf44-SGK3	-	C8orf44-SGK3 readthrough	protein-coding
194643	chr6	33590471	33590930	+	0	NA	intron (NR_027908, intron 1 of 1)	intron (NR_027908, intron 1 of 1)	2638	NR_027908	401253		NM_207497	ENSG00000197251	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
54459	chr12	91911101	91911300	+	0	NA	Intergenic	Intergenic	230513	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
121725	chr19	47701721	47702200	+	0	NA	exon (NM_015711, exon 15 of 15)	exon (NM_015711, exon 15 of 15)	-11462	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
9580	chr1	51989021	51989400	+	0	NA	intron (NM_002867, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	1490	NM_002867	5865		NM_002867	ENSG00000169213	RAB3B	-	RAB3B, member RAS oncogene family	protein-coding
12868	chr1	110150451	110150700	+	0	NA	promoter-TSS (NM_001010898)	promoter-TSS (NM_001010898)	81	NM_001010898	388662		NM_001010898	ENSG00000197106	SLC6A17	MRT48|NTT4	solute carrier family 6 member 17	protein-coding
145415	chr20	42206351	42206450	+	0	NA	intron (NM_007050, intron 15 of 30)	L1PA2|LINE|L1	-479083	NR_110004	101927159		NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA
218699	chr8	58568471	58568980	+	0	NA	intron (NM_001007069, intron 2 of 8)	Tigger3b|DNA|TcMar-Tigger	15464	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
148953	chr21	10521901	10522140	+	0	NA	intron (NM_199261, intron 1 of 23)	CpG	437	NM_199259	7179		NM_199259	ENSG00000274391	TPTE	CT44|PTEN2|TPTE1	transmembrane phosphatase with tensin homology	protein-coding
115765	chr19	16336501	16336700	+	0	NA	Intergenic	Intergenic	11774	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
172079	chr4	1037621	1037880	+	0	NA	Intergenic	Intergenic	25286	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
144013	chr20	33372171	33373050	+	0	NA	intron (NM_001278169, intron 10 of 13)	intron (NM_001278169, intron 10 of 13)	28909	NM_016408	51654		NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
204593	chr7	5301651	5301950	+	0	NA	intron (NM_153247, intron 10 of 10)	L2a|LINE|L2	18857	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
141252	chr2	239756671	239757480	+	0	NA	Intergenic	Intergenic	-5785	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
237194	chrX	107775251	107776600	+	0	NA	promoter-TSS (NM_001318470)	promoter-TSS (NM_001318470)	63	NM_001318470	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
180955	chr5	35623071	35623230	+	0	NA	intron (NM_144722, intron 1 of 9)	MER90a|LTR|ERV1	5287	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
174220	chr4	37754421	37754680	+	0	NA	Intergenic	Intergenic	-68174	NM_001085400	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
96484	chr17	40282821	40283080	+	0	NA	3' UTR (NM_133264, exon 8 of 8)	3' UTR (NM_133264, exon 8 of 8)	-4929	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
222546	chr8	140598501	140599700	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	36533	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
12161	chr1	100306771	100307130	+	0	NA	Intergenic	Intergenic	25709	NR_030279	693138		NR_030279	ENSG00000207750	MIR553	MIRN553|hsa-mir-553	microRNA 553	ncRNA
145688	chr20	45006721	45006980	+	0	NA	intron (NM_006282, intron 9 of 10)	intron (NM_006282, intron 9 of 10)	40338	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
125853	chr2	24489471	24489900	+	0	NA	Intergenic	Intergenic	-1569	NM_147223	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
168321	chr3	141680771	141681300	+	0	NA	intron (NR_136190, intron 2 of 7)	intron (NR_136190, intron 2 of 7)	17836	NR_136190	646730		NR_136190		LINC02618	-	long intergenic non-protein coding RNA 2618	ncRNA
93963	chr17	21512851	21513550	+	0	NA	Intergenic	CpG	38478	NR_160801	339263		NM_001113434	ENSG00000212719	LINC02693	C17orf51	long intergenic non-protein coding RNA 2693	ncRNA
42036	chr11	67438301	67439140	+	0	NA	exon (NM_020441, exon 10 of 11)	exon (NM_020441, exon 10 of 11)	-1038	NM_005608	5790		NM_005608	ENSG00000213402	PTPRCAP	CD45-AP|LPAP	protein tyrosine phosphatase receptor type C associated protein	protein-coding
86255	chr16	58426151	58426680	+	0	NA	Intergenic	Intergenic	33944	NM_022770	64785		NM_022770	ENSG00000181938	GINS3	PSF3	GINS complex subunit 3	protein-coding
136103	chr2	173921421	173921950	+	0	NA	intron (NM_001172712, intron 4 of 6)	AluJo|SINE|Alu	42195	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
148603	chr21	5121971	5122630	+	0	NA	intron (NR_135220, intron 3 of 5)	intron (NR_135220, intron 3 of 5)	6069	NM_001363761	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
139059	chr2	218846151	218846450	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-13505	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
49247	chr12	19440301	19441650	+	0	NA	intron (NM_001267043, intron 1 of 8)	intron (NM_001267043, intron 1 of 8)	376	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
209057	chr7	74764571	74764730	+	0	NA	Intergenic	AluYm1|SINE|Alu	-9312	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
115476	chr19	15364271	15364680	+	0	NA	intron (NM_005858, intron 9 of 13)	AluSg|SINE|Alu	15312	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
182812	chr5	69092201	69092600	+	0	NA	Intergenic	MER41B|LTR|ERV1	-1614	NM_022902	64924		NM_022902	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 member 5	protein-coding
177924	chr4	131749831	131749950	+	0	NA	Intergenic	SST1|Satellite|centr	-14948	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
162694	chr3	48965871	48966030	+	0	NA	intron (NM_001349214, intron 5 of 15)	AluSz|SINE|Alu	-23958	NM_177938	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
10543	chr1	66979871	66980380	+	0	NA	intron (NM_001077702, intron 13 of 15)	intron (NM_001077702, intron 13 of 15)	49869	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
51584	chr12	52633301	52633700	+	0	NA	Intergenic	Intergenic	-14941	NM_175068	319101		NM_175068	ENSG00000186049	KRT73	CK-73|IRT6IRS3|K6IRS3|K73|KRT6IRS3	keratin 73	protein-coding
174118	chr4	36209951	36210300	+	0	NA	intron (NR_146894, intron 6 of 32)	intron (NR_146894, intron 6 of 32)	33814	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
23076	chr1	226646151	226647450	+	0	NA	intron (NM_002221, intron 4 of 7)	intron (NM_002221, intron 4 of 7)	28268	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
227797	chr9	93141671	93142680	+	0	NA	Intergenic	Intergenic	-7924	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
100451	chr17	61397171	61397500	+	0	NA	intron (NR_125750, intron 1 of 2)	CpG	2271	NR_125749	103689912		NR_125749	ENSG00000267280	TBX2-AS1	-	TBX2 antisense RNA 1	ncRNA
131641	chr2	97112801	97114250	+	0	NA	5' UTR (NM_198555, exon 1 of 3)	5' UTR (NM_198555, exon 1 of 3)	372	NM_001354587	375248		NM_198555	ENSG00000135976	ANKRD36	UNQ2430	ankyrin repeat domain 36	protein-coding
25670	chr10	8398821	8399080	+	0	NA	Intergenic	Intergenic	-130645	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
140254	chr2	232219571	232219730	+	0	NA	intron (NR_046477, intron 9 of 18)	L3|LINE|CR1	46997	NR_030288	693147		NR_030288	ENSG00000207626	MIR562	MIRN562|hsa-mir-562	microRNA 562	ncRNA
6464	chr1	28264651	28265780	+	0	NA	intron (NM_031459, intron 1 of 9)	intron (NM_031459, intron 1 of 9)	5697	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
119628	chr19	40791201	40791600	+	0	NA	intron (NR_037791, intron 7 of 11)	L2c|LINE|L2	-7791	NM_080732	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
45143	chr11	117197771	117198550	+	0	NA	TTS (NM_001040455)	TTS (NM_001040455)	-1134	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
23283	chr1	228005751	228006050	+	0	NA	Intergenic	MIRc|SINE|MIR	-1098	NM_033131	89780		NM_033131	ENSG00000154342	WNT3A	-	Wnt family member 3A	protein-coding
92097	chr17	7569101	7569530	+	0	NA	intron (NM_015670, intron 7 of 10)	AluYf1|SINE|Alu	-3510	NM_001416	1973		NM_001416	ENSG00000161960	EIF4A1	DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I	eukaryotic translation initiation factor 4A1	protein-coding
232938	chr9	136910751	136911050	+	0	NA	intron (NM_021138, intron 6 of 10)	intron (NM_021138, intron 6 of 10)	24167	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
229581	chr9	123349721	123350630	+	0	NA	Intergenic	Intergenic	-6022	NM_173689	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
117725	chr19	29528321	29529450	+	0	NA	promoter-TSS (NM_001384643)	promoter-TSS (NM_001384643)	-15	NM_001384643	342865		NM_001146339	ENSG00000187135	VSTM2B	-	V-set and transmembrane domain containing 2B	protein-coding
179814	chr5	445121	446030	+	0	NA	intron (NM_007277, intron 1 of 12)	AluY|SINE|Alu	2399	NM_007277	11336		NM_007277	ENSG00000180104	EXOC3	SEC6|SEC6L1|Sec6p	exocyst complex component 3	protein-coding
216980	chr8	23071871	23072030	+	0	NA	intron (NR_038873, intron 1 of 2)	intron (NR_038873, intron 1 of 2)	-2919	NM_003842	8795		NM_003842	ENSG00000120889	TNFRSF10B	CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9	TNF receptor superfamily member 10b	protein-coding
200275	chr6	132679251	132679350	+	0	NA	Intergenic	L1PA16|LINE|L1	-20118	NM_138327	134864		NM_138327	ENSG00000146399	TAAR1	TA1|TAR1|TRAR1	trace amine associated receptor 1	protein-coding
40831	chr11	64991001	64991200	+	0	NA	promoter-TSS (NM_001300808)	promoter-TSS (NM_001300808)	-823	NM_001300808	116071		NM_138456	ENSG00000168062	BATF2	SARI	basic leucine zipper ATF-like transcription factor 2	protein-coding
89940	chr16	89739501	89739880	+	0	NA	non-coding (NR_110128, exon 11 of 11)	non-coding (NR_110128, exon 11 of 11)	18153	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
107402	chr18	46103771	46104950	+	0	NA	promoter-TSS (NR_026978)	promoter-TSS (NR_026978)	-25	NR_026978	115106		NM_138443	ENSG00000152240	HAUS1	CCDC5|HEI-C|HEIC|HsT1461	HAUS augmin like complex subunit 1	protein-coding
58827	chr12	132837721	132838450	+	0	NA	3' UTR (NM_001161346, exon 18 of 18)	3' UTR (NM_001161346, exon 18 of 18)	-9216	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
44510	chr11	107452971	107453330	+	0	NA	intron (NM_152434, intron 3 of 17)	L1MEc|LINE|L1	4696	NM_152434	143884		NM_152434	ENSG00000152404	CWF19L2	-	CWF19 like cell cycle control factor 2	protein-coding
77347	chr15	82539501	82541150	+	0	NA	non-coding (NR_111943, exon 1 of 4)	non-coding (NR_111943, exon 1 of 4)	132	NM_001021	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
162793	chr3	49100001	49100580	+	0	NA	promoter-TSS (NR_106950)	promoter-TSS (NR_106950)	-376	NR_106950	102465536		NR_106950	ENSG00000284488	MIR6890	hsa-mir-6890	microRNA 6890	ncRNA
225319	chr9	34603221	34604250	+	0	NA	Intergenic	Intergenic	8362	NM_148178	138716		NM_148178	ENSG00000164967	RPP25L	C9orf23|bA296L22.5	ribonuclease P/MRP subunit p25 like	protein-coding
15538	chr1	150533671	150534230	+	0	NA	Intergenic	Intergenic	-15458	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
93072	chr17	17507771	17507930	+	0	NA	intron (NM_001267552, intron 5 of 7)	intron (NM_001267552, intron 5 of 7)	-11455	NM_001199989	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
69167	chr14	92602301	92602500	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	26166	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
38104	chr11	35220301	35221100	+	0	NA	intron (NM_001202557, intron 7 of 8)	intron (NM_001202557, intron 7 of 8)	57750	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
126607	chr2	28788421	28788680	+	0	NA	intron (NM_206876, intron 6 of 8)	intron (NM_206876, intron 6 of 8)	-22284	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
198489	chr6	106324751	106326430	+	0	NA	promoter-TSS (NM_001286106)	promoter-TSS (NM_001286106)	-155	NM_001286106	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
149451	chr21	31656321	31656780	+	0	NA	Intergenic	Intergenic	-3143	NM_000454	6647		NM_000454	ENSG00000142168	SOD1	ALS|ALS1|HEL-S-44|IPOA|SOD|STAHP|hSod1|homodimer	superoxide dismutase 1	protein-coding
109254	chr19	523901	524300	+	0	NA	Intergenic	Intergenic	-7660	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
15769	chr1	151168901	151169550	+	0	NA	TTS (NM_013353)	TTS (NM_013353)	3081	NR_037937	79005		NM_024041	ENSG00000163156	SCNM1	OFD19	sodium channel modifier 1	protein-coding
159450	chr3	13890321	13891100	+	0	NA	Intergenic	Intergenic	-10639	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
11761	chr1	92323621	92324250	+	0	NA	exon (NM_024813, exon 8 of 13)	exon (NM_024813, exon 8 of 13)	24876	NM_024813	79871		NM_024813	ENSG00000122484	RPAP2	C1orf82|Rtr1	RNA polymerase II associated protein 2	protein-coding
40138	chr11	62841201	62843450	+	0	NA	promoter-TSS (NM_001369451)	promoter-TSS (NM_001369451)	-516	NM_001369451	54663		NM_018093	ENSG00000133316	WDR74	Nsa1	WD repeat domain 74	protein-coding
222742	chr8	141405971	141407150	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	14539	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
208741	chr7	73515001	73515980	+	0	NA	intron (NM_001370402, intron 1 of 18)	intron (NM_001370402, intron 1 of 18)	6803	NM_001370402	9031		NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding
134240	chr2	134989071	134989330	+	0	NA	intron (NM_001018044, intron 4 of 7)	intron (NM_001018044, intron 4 of 7)	34449	NM_001321177	80122		NM_025052	ENSG00000176601	MAP3K19	RCK|YSK4	mitogen-activated protein kinase kinase kinase 19	protein-coding
75067	chr15	64276671	64277350	+	0	NA	intron (NM_001329607, intron 2 of 11)	intron (NM_001329607, intron 2 of 11)	79163	NM_001329606	53944		NM_022048	ENSG00000169118	CSNK1G1	CK1gamma1	casein kinase 1 gamma 1	protein-coding
191419	chr6	10409801	10410450	+	0	NA	exon (NM_001372066, exon 2 of 7)	exon (NM_001372066, exon 2 of 7)	-2193	NR_033910	100130275		NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA
65263	chr14	49959851	49960400	+	0	NA	Intergenic	Intergenic	-6274	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
126957	chr2	35973271	35973450	+	0	NA	Intergenic	Intergenic	382210	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
62340	chr13	99087101	99088750	+	0	NA	non-coding (NR_047482, exon 1 of 1)	non-coding (NR_047482, exon 1 of 1)	1202	NR_047482	100861541		NR_047482		DOCK9-DT	DOCK9-AS2	DOCK9 divergent transcript	ncRNA
202279	chr6	157099501	157100550	+	0	NA	intron (NM_001371656, intron 7 of 20)	intron (NM_001371656, intron 7 of 20)	63598	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
112341	chr19	5924201	5924400	+	0	NA	intron (NM_003624, intron 11 of 16)	intron (NM_003624, intron 11 of 16)	10046	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
132277	chr2	104855201	104855650	+	0	NA	5' UTR (NM_006236, exon 1 of 1)	5' UTR (NM_006236, exon 1 of 1)	1310	NM_006236	5455		NM_006236	ENSG00000198914	POU3F3	BRN1|OTF8|SNIBFIS|brain-1|oct-8	POU class 3 homeobox 3	protein-coding
41850	chr11	67142521	67142780	+	0	NA	intron (NM_012308, intron 2 of 20)	AluSq10|SINE|Alu	23387	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
165119	chr3	71685771	71686330	+	0	NA	intron (NM_173359, intron 7 of 7)	AluJb|SINE|Alu	39352	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
224415	chr9	15121601	15122000	+	0	NA	Intergenic	Intergenic	128418	NM_001168342	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
380	chr1	1038021	1038280	+	0	NA	intron (NM_198576, intron 3 of 35)	intron (NM_198576, intron 3 of 35)	4157	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
92129	chr17	7620001	7620580	+	0	NA	intron (NM_001289114, intron 1 of 7)	AluJo|SINE|Alu	-5393	NM_004860	9513		NM_004860	ENSG00000129245	FXR2	FMR1L2|FXR2P	FMR1 autosomal homolog 2	protein-coding
81349	chr16	4799671	4799830	+	0	NA	exon (NM_024589, exon 6 of 11)	exon (NM_024589, exon 6 of 11)	2883	NM_024589	79641		NM_024589	ENSG00000067836	ROGDI	KTZS|RAV2|ROGD1	rogdi atypical leucine zipper	protein-coding
101145	chr17	65048951	65049700	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluSz|SINE|Alu	6449	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
85341	chr16	50161751	50162150	+	0	NA	intron (NM_001040284, intron 2 of 12)	L1MD2|LINE|L1	8644	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
186453	chr5	137695701	137696500	+	0	NA	intron (NM_017415, intron 4 of 14)	intron (NM_017415, intron 4 of 14)	10327	NM_001257195	26249		NM_017415	ENSG00000146021	KLHL3	PHA2D	kelch like family member 3	protein-coding
225013	chr9	33130351	33131500	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	22233	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
32416	chr10	102470321	102470780	+	0	NA	intron (NM_024789, intron 4 of 9)	intron (NM_024789, intron 4 of 9)	9155	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
218677	chr8	58265151	58265800	+	0	NA	intron (NR_105005, intron 2 of 7)	Tigger1|DNA|TcMar-Tigger	6626	NR_105005	101929528		NR_105005	ENSG00000253281	LOC101929528	-	uncharacterized LOC101929528	ncRNA
172097	chr4	1052971	1053130	+	0	NA	Intergenic	Intergenic	40586	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
72226	chr15	30222901	30223400	+	0	NA	Intergenic	CpG	27114	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
145326	chr20	41089671	41089830	+	0	NA	intron (NM_003286, intron 8 of 20)	L1MB3|LINE|L1	-47793	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
50485	chr12	47781971	47782750	+	0	NA	TTS (NM_001308090)	TTS (NM_001308090)	9122	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
180348	chr5	6719901	6720500	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	6768	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
74499	chr15	60127201	60128400	+	0	NA	Intergenic	MIRc|SINE|MIR	123489	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
224688	chr9	21328321	21328750	+	0	NA	Intergenic	Intergenic	6869	NM_018847	55958		NM_018847	ENSG00000198642	KLHL9	-	kelch like family member 9	protein-coding
107174	chr18	35525451	35526380	+	0	NA	Intergenic	Intergenic	-27955	NM_001098817	125476		NM_194281	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
221008	chr8	116085971	116086150	+	0	NA	intron (NR_046215, intron 7 of 13)	intron (NR_046215, intron 7 of 13)	238999	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
134573	chr2	144231751	144232050	+	0	NA	intron (NM_001376321, intron 1 of 9)	intron (NM_001376321, intron 1 of 9)	5439	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
105967	chr18	5196701	5197300	+	0	NA	intron (NM_001330553, intron 1 of 1)	CpG	257	NM_001145194	642597		NM_001145194	ENSG00000231824	AKAIN1	C18orf42	A-kinase anchor inhibitor 1	protein-coding
235969	chrX	53681571	53682030	+	0	NA	intron (NM_031407, intron 2 of 83)	intron (NM_031407, intron 2 of 83)	4919	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
57421	chr12	121841971	121842330	+	0	NA	intron (NM_002150, intron 12 of 13)	L1MB7|LINE|L1	16709	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
199265	chr6	111856971	111858700	+	0	NA	intron (NM_002037, intron 1 of 13)	MamGypLTR2c|LTR|Gypsy	15236	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
36010	chr11	2899801	2900300	+	0	NA	intron (NM_183233, intron 1 of 10)	intron (NM_183233, intron 1 of 10)	359	NM_183233	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
204020	chr7	1917051	1917350	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	23371	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
114521	chr19	12804821	12805400	+	0	NA	Intergenic	AluJb|SINE|Alu	-1474	NM_006397	10535		NM_006397	ENSG00000104889	RNASEH2A	AGS4|JUNB|RNASEHI|RNHIA|RNHL	ribonuclease H2 subunit A	protein-coding
87061	chr16	68354501	68354980	+	0	NA	intron (NR_165372, intron 16 of 19)	intron (NR_165372, intron 16 of 19)	43626	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
2320	chr1	9124001	9124500	+	0	NA	intron (NM_024980, intron 1 of 3)	MIRc|SINE|MIR	4852	NM_024980	80045		NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
67152	chr14	68754071	68754430	+	0	NA	Intergenic	Intergenic	38817	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
99606	chr17	50543771	50544180	+	0	NA	TTS (NM_017957)	TTS (NM_017957)	-3114	NM_001258373	64847		NM_022827	ENSG00000006282	SPATA20	HEL-S-98|SSP411|Tisp78	spermatogenesis associated 20	protein-coding
184906	chr5	112881121	112881580	+	0	NA	intron (NM_005669, intron 4 of 4)	intron (NM_005669, intron 4 of 4)	20063	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
211779	chr7	107563101	107565080	+	0	NA	promoter-TSS (NM_001161520)	promoter-TSS (NM_001161520)	119	NM_001371367	115253422		NM_001371364	ENSG00000288558	DUS4L-BCAP29	-	DUS4L-BCAP29 readthrough	protein-coding
21529	chr1	205811421	205811750	+	0	NA	intron (NM_173854, intron 1 of 10)	intron (NM_173854, intron 1 of 10)	1613	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
25521	chr10	7306201	7306400	+	0	NA	intron (NM_001029880, intron 4 of 20)	MER58B|DNA|hAT-Charlie	103041	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
31775	chr10	98152671	98153030	+	0	NA	intron (NM_001351012, intron 1 of 8)	SVA_C|Retroposon|SVA	18193	NM_001256619	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
28650	chr10	59883551	59883650	+	0	NA	intron (NM_005436, intron 1 of 8)	intron (NM_005436, intron 1 of 8)	22956	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
125289	chr2	10501671	10501830	+	0	NA	Intergenic	Intergenic	52022	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
154427	chr22	35345251	35345350	+	0	NA	intron (NR_156428, intron 11 of 13)	intron (NR_156428, intron 11 of 13)	-8501	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
86038	chr16	57543901	57544850	+	0	NA	intron (NM_153837, intron 1 of 11)	intron (NM_153837, intron 1 of 11)	1732	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
31614	chr10	97373051	97374000	+	0	NA	intron (NM_015179, intron 17 of 33)	intron (NM_015179, intron 17 of 33)	27815	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
177199	chr4	108314951	108315450	+	0	NA	Intergenic	Intergenic	143080	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
139353	chr2	219639901	219640430	+	0	NA	intron (NR_048551, intron 20 of 22)	AluY|SINE|Alu	12535	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
70572	chr14	102599651	102600650	+	0	NA	intron (NM_015156, intron 2 of 11)	AluYc3|SINE|Alu	7501	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
66698	chr14	64232201	64232730	+	0	NA	TTS (NM_001271877)	TTS (NM_001271877)	16511	NM_182910	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
232074	chr9	133487571	133487730	+	0	NA	Intergenic	Intergenic	-8551	NM_001145099	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
96819	chr17	41937371	41937780	+	0	NA	intron (NR_146621, intron 5 of 9)	AluSx1|SINE|Alu	6958	NR_110662	83538		NM_031421	ENSG00000204815	ODAD4	TTC25	outer dynein arm docking complex subunit 4	protein-coding
184656	chr5	107570751	107571500	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	99812	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
188178	chr5	150484951	150485050	+	0	NA	intron (NR_105061, intron 2 of 2)	intron (NR_105061, intron 2 of 2)	992	NR_105061	102546298		NR_105061	ENSG00000254333	NDST1-AS1	-	NDST1 antisense RNA 1	ncRNA
29602	chr10	71747271	71747450	+	0	NA	TTS (NM_022153)	TTS (NM_022153)	-9510	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
135062	chr2	156433871	156434050	+	0	NA	Intergenic	Intergenic	-1592	NM_001083112	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
201995	chr6	152386121	152386380	+	0	NA	intron (NM_033071, intron 54 of 145)	MIR|SINE|MIR	5720	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
177042	chr4	107736751	107737250	+	0	NA	Intergenic	PABL_B-int|LTR|ERV1	-16766	NM_005443	9061		NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
1071	chr1	1916671	1916830	+	0	NA	TTS (NM_178545)	TTS (NM_178545)	1490	NM_138705	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
136915	chr2	189675751	189675950	+	0	NA	promoter-TSS (NM_144708)	promoter-TSS (NM_144708)	-135	NM_144708	150709		NM_144708	ENSG00000151687	ANKAR	-	ankyrin and armadillo repeat containing	protein-coding
203975	chr7	1662201	1662500	+	0	NA	Intergenic	Intergenic	-25769	NM_001128636	392617		NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
43629	chr11	83250051	83250380	+	0	NA	intron (NM_001300972, intron 11 of 11)	intron (NM_001300972, intron 11 of 11)	36192	NM_001286120	60492		NM_021825	ENSG00000137500	CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding
59181	chr13	22040821	22041280	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-162890	NR_047040	100874182		NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
31255	chr10	91985471	91985830	+	0	NA	intron (NR_165098, intron 20 of 38)	L1ME2z|LINE|L1	61880	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
143703	chr20	32205201	32205900	+	0	NA	intron (NM_002657, intron 1 of 2)	intron (NM_002657, intron 1 of 2)	2193	NM_002657	5326		NM_002657	ENSG00000126003	PLAGL2	ZNF900	PLAG1 like zinc finger 2	protein-coding
79711	chr16	1312801	1313200	+	0	NA	intron (NM_194259, intron 2 of 7)	intron (NM_194259, intron 2 of 7)	3364	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
47607	chr12	5888121	5888580	+	0	NA	intron (NM_001364791, intron 3 of 24)	LTR12C|LTR|ERV1	56909	NM_001278596	57101		NM_020373	ENSG00000047617	ANO2	C12orf3|TMEM16B	anoctamin 2	protein-coding
229306	chr9	120866621	120867030	+	0	NA	intron (NM_001286840, intron 7 of 14)	intron (NM_001286840, intron 7 of 14)	2086	NR_104601	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
95844	chr17	38817871	38818230	+	0	NA	intron (NR_073428, intron 2 of 10)	AluSg|SINE|Alu	7271	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
46932	chr11	134333501	134334080	+	0	NA	intron (NM_138342, intron 1 of 19)	intron (NM_138342, intron 1 of 19)	1802	NM_001370463	89944		NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	galactosidase beta 1 like 2	protein-coding
2453	chr1	9638221	9638730	+	0	NA	Intergenic	AluY|SINE|Alu	-13256	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
36641	chr11	7673001	7673200	+	0	NA	promoter-TSS (NM_001302827)	promoter-TSS (NM_001302827)	-209	NM_001302827	51700		NM_016229	ENSG00000166394	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
83316	chr16	24609771	24609930	+	0	NA	promoter-TSS (NM_001351850)	promoter-TSS (NM_001351850)	-355	NM_001351850	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
105355	chr17	82641501	82641700	+	0	NA	intron (NM_019613, intron 2 of 9)	MER21A|LTR|ERVL	6844	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
7278	chr1	32376171	32377030	+	0	NA	exon (NM_001143888, exon 9 of 11)	exon (NM_001143888, exon 9 of 11)	14061	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
5211	chr1	24978521	24979300	+	0	NA	Intergenic	L2b|LINE|L2	-13900	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
12378	chr1	101259671	101260180	+	0	NA	Intergenic	Intergenic	22906	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
179200	chr4	173368601	173368800	+	0	NA	Intergenic	AluSx|SINE|Alu	-2254	NM_003864	8819		NM_003864	ENSG00000164105	SAP30	-	Sin3A associated protein 30	protein-coding
213799	chr7	140919951	140920650	+	0	NA	intron (NM_001374244, intron 1 of 18)	intron (NM_001374244, intron 1 of 18)	3968	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
157812	chr22	46941121	46941200	+	0	NA	intron (NR_104292, intron 10 of 13)	intron (NR_104292, intron 10 of 13)	-25118	NR_122047	642757		NR_122047	ENSG00000280080	TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
132026	chr2	100819771	100820750	+	0	NA	5' UTR (NM_002518, exon 1 of 21)	5' UTR (NM_002518, exon 1 of 21)	121	NM_002518	4862		NM_002518	ENSG00000170485	NPAS2	MOP4|PASD4|bHLHe9	neuronal PAS domain protein 2	protein-coding
123428	chr19	54110551	54110650	+	0	NA	intron (NM_001321792, intron 2 of 5).5	AluSx1|SINE|Alu	4474	NM_001321792	29844		NM_013342	ENSG00000105619	TFPT	FB1|INO80F|amida	TCF3 fusion partner	protein-coding
117892	chr19	32700051	32700730	+	0	NA	intron (NM_001105570, intron 1 of 2)	LTR12|LTR|ERV1	8429	NM_001105570	390916		NM_001105570	ENSG00000213965	NUDT19	RP2	nudix hydrolase 19	protein-coding
59888	chr13	30720521	30720980	+	0	NA	intron (NM_001204406, intron 1 of 5)	intron (NM_001204406, intron 1 of 5)	7272	NM_001204406	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
68763	chr14	91062801	91064100	+	0	NA	intron (NM_001358312, intron 1 of 13)	MLT1J2|LTR|ERVL-MaLR	-2801	NM_182398	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
165060	chr3	71451801	71452030	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	90174	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
5682	chr1	26355101	26355500	+	0	NA	Intergenic	Intergenic	-1170	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
12667	chr1	109282821	109284150	+	0	NA	promoter-TSS (NM_001350237)	promoter-TSS (NM_001350237)	-317	NM_001350240	84722		NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
151933	chr22	19042621	19042750	+	0	NA	intron (NM_001173533, intron 6 of 8)	L2|LINE|L2	5690	NR_024157	25786		NR_024157	ENSG00000273311	DGCR11	DGS-D	DiGeorge syndrome critical region gene 11	ncRNA
239420	chrY	56680371	56681180	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-273480	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
41418	chr11	66051771	66053780	+	0	NA	promoter-TSS (NR_145738)	promoter-TSS (NR_145738)	-369	NR_145738	109616986		NR_145738		SNORD13F	-	small nucleolar RNA, C/D box 13F	snoRNA
143604	chr20	31711951	31712430	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-9317	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
61995	chr13	80400951	80401050	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-59874	NM_005842	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
112847	chr19	7541771	7541930	+	0	NA	intron (NM_006702, intron 12 of 34)	intron (NM_006702, intron 12 of 34)	6133	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
18269	chr1	161099871	161100230	+	0	NA	TTS (NM_012394)	TTS (NM_012394)	1689	NM_001007255	126823		NM_152366	ENSG00000162755	KLHDC9	KARCA1	kelch domain containing 9	protein-coding
142362	chr20	3777201	3778780	+	0	NA	3' UTR (NM_015417, exon 7 of 7)	3' UTR (NM_015417, exon 7 of 7)	3458	NM_015417	25876		NM_015417	ENSG00000101222	SPEF1	C20orf28|CLAMP|SPEF1A	sperm flagellar 1	protein-coding
110529	chr19	2078951	2079350	+	0	NA	intron (NM_130807, intron 2 of 4)	intron (NM_130807, intron 2 of 4)	17176	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
179081	chr4	168272501	168272770	+	0	NA	intron (NM_017631, intron 18 of 37)	LTR16A|LTR|ERVL	46117	NM_017631	55601		NM_017631	ENSG00000137628	DDX60	-	DExD/H-box helicase 60	protein-coding
192973	chr6	27876971	27877130	+	0	NA	Intergenic	Intergenic	-3516	NM_003546	8368		NM_003546	ENSG00000275126	H4C13	H4-16|H4.k|H4/k|H4C1|H4C11|H4C12|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4FK|HIST1H4L	H4 clustered histone 13	protein-coding
135178	chr2	157898551	157898990	+	0	NA	Intergenic	Intergenic	-22440	NM_001111067	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
143954	chr20	32822271	32822680	+	0	NA	intron (NM_012325, intron 1 of 6)	L2a|LINE|L2	2521	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
120894	chr19	45589501	45589930	+	0	NA	TTS (NM_005282)	TTS (NM_005282)	-4913	NM_001017989	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
127088	chr2	37589271	37589630	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	82192	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
61960	chr13	79397501	79397700	+	0	NA	intron (NM_022118, intron 1 of 20)	AluSc8|SINE|Alu	8621	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
115449	chr19	15330651	15333150	+	0	NA	intron (NM_001379291, intron 1 of 19)	CpG	639	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
159922	chr3	16997251	16998080	+	0	NA	intron (NM_015184, intron 1 of 5)	AluSc8|SINE|Alu	64469	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
188062	chr5	150045721	150046750	+	0	NA	intron (NM_001366501, intron 15 of 18)	MIR|SINE|MIR	40319	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
207126	chr7	42911051	42912780	+	0	NA	promoter-TSS (NM_001363436)	promoter-TSS (NM_001363436)	-72	NM_001363436	79020		NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding
158232	chr22	50280571	50280730	+	0	NA	exon (NM_001376884, exon 24 of 36)	exon (NM_001376884, exon 24 of 36)	-10270	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
92327	chr17	8147071	8147730	+	0	NA	intron (NM_002616, intron 12 of 22)	intron (NM_002616, intron 12 of 22)	-2329	NR_106943	102465532		NR_106943	ENSG00000284117	MIR6883	hsa-mir-6883	microRNA 6883	ncRNA
107620	chr18	48933721	48934250	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	8822	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
81147	chr16	4407501	4408280	+	0	NA	intron (NM_001351729, intron 4 of 27)	intron (NM_001351729, intron 4 of 27)	8007	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
56701	chr12	120088601	120088800	+	0	NA	intron (NR_147894, intron 7 of 8)	AluY|SINE|Alu	28053	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
159044	chr3	11334871	11335350	+	0	NA	intron (NM_001349235, intron 10 of 19)	intron (NM_001349235, intron 10 of 19)	62713	NM_001144912	10533		NM_006395	ENSG00000197548	ATG7	APG7-LIKE|APG7L|GSA7|SCAR31	autophagy related 7	protein-coding
167593	chr3	129563551	129563650	+	0	NA	intron (NM_015103, intron 25 of 35)	MIRb|SINE|MIR	15215	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
196497	chr6	43644201	43644400	+	0	NA	promoter-TSS (NM_001193341)	promoter-TSS (NM_001193341)	-730	NM_001193341	221421		NM_152732	ENSG00000172426	RSPH9	C6orf206|CILD12|MRPS18AL1	radial spoke head component 9	protein-coding
55032	chr12	96388551	96388650	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	11839	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
21860	chr1	207536451	207536550	+	0	NA	intron (NM_000651, intron 11 of 46)	Tigger1|DNA|TcMar-Tigger	40343	NM_000651	1378		NM_000573	ENSG00000203710	CR1	C3BR|C4BR|CD35|KN	complement C3b/C4b receptor 1 (Knops blood group)	protein-coding
201482	chr6	148867001	148867200	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	97584	NR_038408	100128176		NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA
82969	chr16	21936851	21937030	+	0	NA	Intergenic	AluYj4|SINE|Alu	-16421	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
112525	chr19	6513651	6513750	+	0	NA	Intergenic	(ATAC)n|Simple_repeat|Simple_repeat	-10852	NM_001289123	10382		NM_006087	ENSG00000104833	TUBB4A	DYT4|TUBB4|beta-5	tubulin beta 4A class IVa	protein-coding
13220	chr1	112663421	112663680	+	0	NA	intron (NM_006135, intron 7 of 9)	AluSx1|SINE|Alu	-10762	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
114870	chr19	13871071	13871580	+	0	NA	intron (NR_146097, intron 1 of 1)	intron (NR_146097, intron 1 of 1)	-3374	NR_029613	406957		NR_029613	ENSG00000207613	MIR181C	MIRN181C|mir-181c	microRNA 181c	ncRNA
208412	chr7	66740001	66741450	+	0	NA	promoter-TSS (NM_001367742)	promoter-TSS (NM_001367742)	-8	NM_001287062	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
222411	chr8	134457101	134457700	+	0	NA	Intergenic	Intergenic	-140671	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
30532	chr10	79400551	79401100	+	0	NA	intron (NM_153367, intron 2 of 3)	intron (NM_153367, intron 2 of 3)	44799	NM_153367	219654		NM_153367	ENSG00000165424	ZCCHC24	C10orf56|Z3CXXC8	zinc finger CCHC-type containing 24	protein-coding
97246	chr17	42982101	42982530	+	0	NA	intron (NM_001321381, intron 2 of 5)	intron (NM_001321381, intron 2 of 5)	1750	NM_001321381	146923		NM_173079	ENSG00000198863	RUNDC1	RUND1	RUN domain containing 1	protein-coding
114345	chr19	12180301	12180500	+	0	NA	intron (NM_001348014, intron 2 of 4)	intron (NM_001348014, intron 2 of 4)	-14615	NR_104179	100289333		NR_104179		LOC100289333	-	uncharacterized LOC100289333	pseudo
227542	chr9	91782771	91782930	+	0	NA	intron (NM_001318204, intron 1 of 7)	intron (NM_001318204, intron 1 of 7)	-146505	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
218858	chr8	60409051	60409750	+	0	NA	intron (NR_103854, intron 1 of 2)	MIR|SINE|MIR	4418	NR_103854	100505532		NR_103854		LINC01301	-	long intergenic non-protein coding RNA 1301	ncRNA
96443	chr17	40199501	40199930	+	0	NA	Intergenic	AluJr|SINE|Alu	6118	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
25409	chr10	6545421	6545680	+	0	NA	intron (NM_001323265, intron 1 of 17)	L1MB3|LINE|L1	34726	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
72703	chr15	38620821	38621080	+	0	NA	Intergenic	Intergenic	-56136	NM_005739	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
69369	chr14	94021701	94022330	+	0	NA	Intergenic	Intergenic	-4325	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
21401	chr1	205285601	205286300	+	0	NA	Intergenic	L3b|LINE|CR1	28753	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
21895	chr1	207810651	207811180	+	0	NA	intron (NR_135299, intron 4 of 5)	intron (NR_135299, intron 4 of 5)	-7464	NR_026817	148696		NM_001039568		LOC148696	-	uncharacterized LOC148696	ncRNA
71735	chr15	20570451	20570630	+	0	NA	intron (NR_027411, intron 12 of 17)	intron (NR_027411, intron 12 of 17)	8191	NR_027411	729786		NR_027411	ENSG00000181984	GOLGA8CP	GOLGA8C	golgin A8 family member C, pseudogene	pseudo
77149	chr15	79925071	79925480	+	0	NA	TTS (NR_028330)	TTS (NR_028330)	-1523	NR_037653	400410		NM_001100879	ENSG00000180953	ST20	HCCS-1	suppressor of tumorigenicity 20	ncRNA
211746	chr7	107180351	107180750	+	0	NA	intron (NM_001244262, intron 2 of 10).2	Tigger12c|DNA|TcMar-Tigger	11547	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
169106	chr3	155511701	155511930	+	0	NA	intron (NM_001349250, intron 11 of 23)	L1PA2|LINE|L1	26012	NR_146955	100874036		NR_146955	ENSG00000242925	PLCH1-AS2	-	PLCH1 antisense RNA 2	ncRNA
48660	chr12	10440121	10440580	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-4357	NM_002260	3822		NM_002260	ENSG00000205809	KLRC2	CD159c|NKG2-C|NKG2C	killer cell lectin like receptor C2	protein-coding
53527	chr12	66965651	66965900	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	103563	NM_001379351	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
222597	chr8	141006271	141006850	+	0	NA	Intergenic	Intergenic	-4481	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
94185	chr17	28551701	28553080	+	0	NA	TTS (NM_033198)	TTS (NM_033198)	234	NM_001330166	9094		NM_005148	ENSG00000109103	UNC119	CORD24|HRG4|IMD13|POC7|POC7A	unc-119 lipid binding chaperone	protein-coding
164242	chr3	57100121	57100530	+	0	NA	intron (NM_001318864, intron 12 of 13)	intron (NM_001318864, intron 12 of 13)	-21057	NM_001377408	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
215424	chr7	157657051	157657550	+	0	NA	intron (NM_130842, intron 12 of 21)	(AC)n|Simple_repeat|Simple_repeat	-82878	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
57509	chr12	122107121	122107380	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	28494	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
175513	chr4	74189251	74189550	+	0	NA	intron (NM_001351314, intron 5 of 9)	intron (NM_001351314, intron 5 of 9)	31282	NM_001004346	441024		NM_001004346	ENSG00000163738	MTHFD2L	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like	protein-coding
221464	chr8	124453221	124453480	+	0	NA	TTS (NM_017956)	TTS (NM_017956)	2530	NM_017956	55039		NM_017956	ENSG00000183665	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog	protein-coding
84132	chr16	29710251	29711200	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	31545	NR_134536	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
48695	chr12	10598701	10598930	+	0	NA	intron (NR_028045, intron 1 of 6)	MER5A|DNA|hAT-Charlie	1020	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
224293	chr9	6432301	6432500	+	0	NA	intron (NR_046386, intron 2 of 16)	intron (NR_046386, intron 2 of 16)	19201	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
50296	chr12	46387001	46387200	+	0	NA	intron (NR_125381, intron 1 of 2)	intron (NR_125381, intron 1 of 2)	2993	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
27242	chr10	29591671	29591830	+	0	NA	intron (NM_003174, intron 3 of 35)	intron (NM_003174, intron 3 of 35)	10596	NR_030634	100126327		NR_030634	ENSG00000216035	MIR938	MIRN938|hsa-mir-938	microRNA 938	ncRNA
196511	chr6	43687301	43688230	+	0	NA	promoter-TSS (NM_001193343)	promoter-TSS (NM_001193343)	26	NM_018135	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
234457	chrX	17690101	17690400	+	0	NA	intron (NM_001291867, intron 2 of 8)	intron (NM_001291867, intron 2 of 8)	-47199	NM_001037535	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
104459	chr17	81105771	81105930	+	0	NA	intron (NM_001385159, intron 5 of 8)	intron (NM_001385159, intron 5 of 8)	8239	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
195364	chr6	36678471	36679400	+	0	NA	promoter-TSS (NR_144384)	promoter-TSS (NR_144384)	221	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
196836	chr6	47242221	47242880	+	0	NA	intron (NM_014452, intron 4 of 5)	intron (NM_014452, intron 4 of 5)	67355	NM_014452	27242		NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
202246	chr6	156887601	156887800	+	0	NA	intron (NM_001371656, intron 4 of 20)	intron (NM_001371656, intron 4 of 20)	-107969	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
80380	chr16	2535721	2536380	+	0	NA	Intergenic	MIR|SINE|MIR	-1971	NM_031268	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
126365	chr2	27439121	27439630	+	0	NA	intron (NM_001321361, intron 11 of 18)	AluY|SINE|Alu	-2991	NM_001168364	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
171508	chr3	196634801	196635580	+	0	NA	Intergenic	Intergenic	-2603	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
210544	chr7	100271221	100272680	+	0	NA	non-coding (NR_028039, exon 1 of 8)	non-coding (NR_028039, exon 1 of 8)	255	NR_028038	352954		NM_178831	ENSG00000291122	CASTOR3P	CASTOR3|GATS|STAG3OS	CASTOR family member 3, pseudogene	pseudo
148331	chr20	63781251	63781430	+	0	NA	intron (NM_025224, intron 2 of 4)	L1MB4|LINE|L1	24163	NM_025224	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
216160	chr8	11702571	11702730	+	0	NA	intron (NM_001308094, intron 2 of 6)	CpG	-1552	NM_001308093	2626		NM_002052	ENSG00000136574	GATA4	ASD2|TACHD|TOF|VSD1	GATA binding protein 4	protein-coding
116666	chr19	18388051	18389430	+	0	NA	exon (NM_004864, exon 2 of 2)	exon (NM_004864, exon 2 of 2)	2178	NR_036156	100422943		NR_036156	ENSG00000264175	MIR3189	mir-3189	microRNA 3189	ncRNA
135598	chr2	167752521	167752650	+	0	NA	intron (NM_020981, intron 3 of 4)	(CC)n|Simple_repeat|Simple_repeat	188559	NR_131227	105616981		NR_131227	ENSG00000235335	B3GALT1-AS1	-	B3GALT1 antisense RNA 1	ncRNA
102794	chr17	76384201	76385300	+	0	NA	promoter-TSS (NM_001142602)	promoter-TSS (NM_001142602)	141	NM_182965	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
142260	chr20	3168121	3169050	+	0	NA	intron (NM_001282533, intron 1 of 5)	intron (NM_001282533, intron 1 of 5)	4964	NM_001365618	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
67588	chr14	71848371	71848550	+	0	NA	Intergenic	L1PA2|LINE|L1	-83711	NM_001204423	9628		NM_004296	ENSG00000182732	RGS6	GAP|HA117|S914	regulator of G protein signaling 6	protein-coding
47171	chr12	782171	782930	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	29627	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
29909	chr10	73163751	73164530	+	0	NA	intron (NM_007265, intron 1 of 13)	AluSz|SINE|Alu	3868	NM_007265	11319		NM_007265	ENSG00000122882	ECD	GCR2|HSGT1|SGT1	ecdysoneless cell cycle regulator	protein-coding
148004	chr20	63043371	63044050	+	0	NA	intron (NR_033369, intron 1 of 5)	intron (NR_033369, intron 1 of 5)	5699	NR_033369	100144597		NR_033369	ENSG00000237119	LINC01056	-	long intergenic non-protein coding RNA 1056	ncRNA
103545	chr17	78661871	78662030	+	0	NA	Intergenic	L1MC4|LINE|L1	-29893	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
169253	chr3	157157721	157158330	+	0	NA	intron (NM_001308185, intron 3 of 10)	intron (NM_001308185, intron 3 of 10)	2122	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
182031	chr5	55600421	55601080	+	0	NA	Intergenic	Intergenic	-65672	NR_103485	8611		NM_003711	ENSG00000067113	PLPP1	LLP1a|LPP1|PAP-2a|PAP2|PPAP2A	phospholipid phosphatase 1	protein-coding
183662	chr5	80346071	80346550	+	0	NA	Intergenic	Intergenic	5656	NR_003665	441089		NR_003665		CRSP8P	-	mediator complex subunit 27 pseudogene	pseudo
53100	chr12	57759201	57759830	+	0	NA	3' UTR (NM_138396, exon 4 of 4)	3' UTR (NM_138396, exon 4 of 4)	4412	NM_138396	92979		NM_138396	ENSG00000139266	MARCHF9	MARCH-IX|MARCH9|RNF179	membrane associated ring-CH-type finger 9	protein-coding
120358	chr19	43595801	43597380	+	0	NA	promoter-TSS (NM_001145347)	promoter-TSS (NM_001145347)	-5	NM_001145347	79177		NM_024327	ENSG00000124444	ZNF576	-	zinc finger protein 576	protein-coding
124990	chr2	9421671	9421830	+	0	NA	intron (NM_001369746, intron 1 of 7)	L2b|LINE|L2	841	NR_134951	9270		NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin subunit beta 1 binding protein 1	protein-coding
14339	chr1	143970571	143971090	+	0	NA	intron (NR_144349, intron 1 of 3)	intron (NR_144349, intron 1 of 3)	1176	NM_001346070	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
67312	chr14	69614751	69614850	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	3204	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
83028	chr16	22306221	22306680	+	0	NA	intron (NM_018119, intron 3 of 20).2	AluSg|SINE|Alu	9041	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
53468	chr12	65928321	65928400	+	0	NA	intron (NM_003483, intron 3 of 4)	Tigger3b|DNA|TcMar-Tigger	-46035	NR_158985	100129940		NR_120478	ENSG00000197301	HMGA2-AS1	-	HMGA2 antisense RNA 1	ncRNA
152261	chr22	20246751	20247050	+	0	NA	intron (NM_023004, intron 1 of 1)	MIR|SINE|MIR	2311	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA
126443	chr2	28032971	28033130	+	0	NA	intron (NM_199193, intron 6 of 13)	L1MD2|LINE|L1	36683	NR_036230	100422965		NR_036230	ENSG00000265321	MIR4263	-	microRNA 4263	ncRNA
227373	chr9	89494221	89494630	+	0	NA	intron (NM_001371194, intron 1 of 15)	L2a|LINE|L2	1231	NM_001371198	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
211097	chr7	102499851	102500280	+	0	NA	intron (NM_001367767, intron 8 of 20)	AluSx|SINE|Alu	17712	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
5853	chr1	26726671	26727130	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	30885	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
194044	chr6	31845771	31845930	+	0	NA	Intergenic	L2|LINE|L2	8774	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
47878	chr12	6688451	6690230	+	0	NA	promoter-TSS (NM_133476)	promoter-TSS (NM_133476)	35	NM_133476	171017		NM_133476	ENSG00000126746	ZNF384	CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1	zinc finger protein 384	protein-coding
144614	chr20	35837671	35838030	+	0	NA	intron (NM_016436, intron 2 of 17)	intron (NM_016436, intron 2 of 17)	65835	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
182304	chr5	58458671	58458830	+	0	NA	exon (NM_006622, exon 3 of 14)	exon (NM_006622, exon 3 of 14)	1336	NM_006622	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
110038	chr19	1462821	1463500	+	0	NA	intron (NM_005883, intron 14 of 14)	AluY|SINE|Alu	10176	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
158330	chr22	50443071	50443590	+	0	NA	intron (NM_001351641, intron 22 of 23)	intron (NM_001351641, intron 22 of 23)	31705	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
102693	chr17	76134971	76135980	+	0	NA	TTS (NM_001454)	TTS (NM_001454)	-5081	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
73540	chr15	43830651	43831430	+	0	NA	intron (NM_024908, intron 2 of 12)	AluSx1|SINE|Alu	4038	NM_001167941	79968		NM_024908	ENSG00000092470	WDR76	CDW14|CMR1	WD repeat domain 76	protein-coding
151214	chr21	45221151	45222330	+	0	NA	intron (NR_073200, intron 11 of 12)	intron (NR_073200, intron 11 of 12)	-12600	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
111294	chr19	3577151	3577750	+	0	NA	intron (NM_006339, intron 8 of 9)	CpG-13302	4506	NM_006339	10362		NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
224140	chr9	4759321	4760280	+	0	NA	Intergenic	AluSz|SINE|Alu	-17757	NM_001199853	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
101410	chr17	67386771	67387900	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	10054	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
33263	chr10	114512901	114514000	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	13463	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
124646	chr2	2120901	2121100	+	0	NA	intron (NM_001329845, intron 3 of 24)	intron (NM_001329845, intron 3 of 24)	-198232	NR_024468	730811		NR_024468	ENSG00000225619	MYT1L-AS1	-	MYT1L antisense RNA 1	ncRNA
172779	chr4	2936801	2937930	+	0	NA	TTS (NM_003703)	TTS (NM_003703)	1819	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
115065	chr19	14197051	14197150	+	0	NA	intron (NM_001008701, intron 1 of 23)	AluJo|SINE|Alu	9069	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
144713	chr20	36529271	36529630	+	0	NA	TTS (NM_001042486)	TTS (NM_001042486)	-12069	NM_006097	10398		NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MMIHS4|MRLC1|MYRL2	myosin light chain 9	protein-coding
19051	chr1	169708151	169709350	+	0	NA	non-coding (NR_029467, exon 1 of 7)	non-coding (NR_029467, exon 1 of 7)	107	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
114463	chr19	12727571	12728200	+	0	NA	Intergenic	AluJo|SINE|Alu	-3953	NM_001382241	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
48593	chr12	10314551	10314650	+	0	NA	intron (NR_147039, intron 5 of 5)	intron (NR_147039, intron 5 of 5)	6730	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
9587	chr1	52053201	52053400	+	0	NA	TTS (NR_126385)	TTS (NR_126385)	1891	NM_015913	51060		NM_015913	ENSG00000117862	TXNDC12	AG1|AGR1|ERP16|ERP18|ERP19|PDIA16|TLP19|hAG-1|hTLP19	thioredoxin domain containing 12	protein-coding
121025	chr19	45800051	45800150	+	0	NA	intron (NM_030785, intron 5 of 5)	intron (NM_030785, intron 5 of 5)	-7255	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
8779	chr1	42816421	42817850	+	0	NA	promoter-TSS (NM_001017922)	promoter-TSS (NM_001017922)	13	NM_001017922	114625		NM_018538	ENSG00000164010	ERMAP	BTN5|PRO2801|RD|SC	erythroblast membrane associated protein (Scianna blood group)	protein-coding
179302	chr4	177348251	177348780	+	0	NA	intron (NM_018248, intron 6 of 9)	intron (NM_018248, intron 6 of 9)	38641	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
97004	chr17	42291171	42291330	+	0	NA	intron (NM_001288719, intron 3 of 17)	MER1A|DNA|hAT-Charlie	3194	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
41285	chr11	65857701	65858800	+	0	NA	promoter-TSS (NM_005507)	promoter-TSS (NM_005507)	-70	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
84606	chr16	30672421	30674080	+	0	NA	Intergenic	AluJb|SINE|Alu	14819	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
133844	chr2	128232751	128233980	+	0	NA	Intergenic	CpG	85503	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
195856	chr6	41503901	41504580	+	0	NA	intron (NR_120347, intron 2 of 2)	CpG	1796	NR_120347	103106903		NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA
108480	chr18	70676471	70676630	+	0	NA	Intergenic	Intergenic	-25596	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
213226	chr7	133479401	133479800	+	0	NA	intron (NM_021807, intron 8 of 17)	intron (NM_021807, intron 8 of 17)	188719	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
158284	chr22	50350651	50350980	+	0	NA	intron (NM_001351641, intron 1 of 23)	AluY|SINE|Alu	7488	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
162377	chr3	48016171	48016880	+	0	NA	promoter-TSS (NM_001385664)	promoter-TSS (NM_001385664)	-109	NM_001385675	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
94940	chr17	32062901	32063250	+	0	NA	Intergenic	Intergenic	22739	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
217708	chr8	30138651	30139150	+	0	NA	TTS (NM_001128208)	TTS (NM_001128208)	5765	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
164875	chr3	71078801	71079380	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-14166	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
138433	chr2	205957371	205957950	+	0	NA	Intergenic	MER74A|LTR|ERVL	128514	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
9885	chr1	54353451	54353950	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	52694	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
80481	chr16	2705851	2705950	+	0	NA	intron (NM_018992, intron 5 of 5)	intron (NM_018992, intron 5 of 5)	14324	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
60397	chr13	40956971	40957130	+	0	NA	intron (NM_001370329, intron 4 of 9)	LTR49-int|LTR|ERV1	25232	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
57090	chr12	121031251	121031550	+	0	NA	intron (NM_003733, intron 3 of 5)	intron (NM_003733, intron 3 of 5)	7842	NM_003733	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
201434	chr6	147209351	147209850	+	0	NA	intron (NM_139244, intron 2 of 25)	intron (NM_139244, intron 2 of 25)	-4986	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
164340	chr3	58006471	58006880	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1747	NM_001164317	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
178241	chr4	143359101	143359580	+	0	NA	intron (NM_002039, intron 1 of 9)	intron (NM_002039, intron 1 of 9)	15880	NR_036091	100423017		NR_036091	ENSG00000265623	MIR3139	-	microRNA 3139	ncRNA
30849	chr10	86524171	86524850	+	0	NA	Intergenic	Intergenic	-2718	NM_015045	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
55345	chr12	103967321	103967930	+	0	NA	intron (NM_001363612, intron 1 of 8)	AluSx1|SINE|Alu	1753	NM_003211	6996		NM_003211	ENSG00000139372	TDG	hTDG	thymine DNA glycosylase	protein-coding
76291	chr15	74157071	74157230	+	0	NA	Intergenic	Intergenic	-16560	NM_005545	3671		NM_005545	ENSG00000129009	ISLR	HsT17563|Meflin	immunoglobulin superfamily containing leucine rich repeat	protein-coding
219861	chr8	85120351	85120450	+	0	NA	intron (NM_033402, intron 6 of 18)	L1ME2z|LINE|L1	13162	NM_001349639	85444		NM_033402	ENSG00000133739	LRRCC1	CLERC|CLERK|SAP2|VFL1	leucine rich repeat and coiled-coil centrosomal protein 1	protein-coding
971	chr1	1793321	1793780	+	0	NA	intron (NM_001282539, intron 6 of 10)	intron (NM_001282539, intron 6 of 10)	-13519	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
170775	chr3	188686571	188686730	+	0	NA	intron (NR_164692, intron 6 of 9)	MER5B|DNA|hAT-Charlie	-2131	NR_029502	407020		NR_029502	ENSG00000207651	MIR28	MIRN28|hsa-mir-28|miR-28	microRNA 28	ncRNA
222177	chr8	132982271	132982650	+	0	NA	intron (NM_003235, intron 34 of 47)	intron (NM_003235, intron 34 of 47)	64121	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
66616	chr14	63723801	63724330	+	0	NA	intron (NM_030791, intron 1 of 2)	AluJo|SINE|Alu	4000	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
57065	chr12	120971671	120972300	+	0	NA	non-coding (NR_024345, exon 1 of 1)	non-coding (NR_024345, exon 1 of 1)	307	NR_024345	283460		NR_024345	ENSG00000241388	HNF1A-AS1	C12orf27|HAS1|HASTER|NCRNA00262	HNF1A antisense RNA 1	ncRNA
106335	chr18	12989901	12990450	+	0	NA	Intergenic	Intergenic	-1187	NM_032142	55125		NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
87425	chr16	70687251	70687930	+	0	NA	3' UTR (NM_018052, exon 19 of 19)	3' UTR (NM_018052, exon 19 of 19)	-1537	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
87373	chr16	70430501	70431500	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	8100	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
162520	chr3	48591271	48591900	+	0	NA	exon (NM_000094, exon 13 of 119)	exon (NM_000094, exon 13 of 119)	3744	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
127972	chr2	46704751	46705050	+	0	NA	intron (NM_144949, intron 1 of 1)	MER21B|LTR|ERVL	5605	NM_144949	9655		NM_014011	ENSG00000171150	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
1109	chr1	2051521	2052080	+	0	NA	intron (NM_002744, intron 1 of 17)	intron (NM_002744, intron 1 of 17)	1389	NM_002744	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
52293	chr12	54596251	54596780	+	0	NA	Intergenic	Intergenic	-7856	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
135566	chr2	165737021	165737300	+	0	NA	Intergenic	L1PA2|LINE|L1	57087	NM_004482	2591		NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HFTC1|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
76562	chr15	75215971	75216530	+	0	NA	Intergenic	Intergenic	13440	NM_001321990	105376731		NM_001321990	ENSG00000293502	LOC105376731	-	taste receptor cell protein 1-like	pseudo
177546	chr4	119095721	119096000	+	0	NA	Intergenic	Intergenic	-39972	NM_016599	51778		NM_016599	ENSG00000172399	MYOZ2	C4orf5|CMH16|CS-1|FATZ-2	myozenin 2	protein-coding
116698	chr19	18432851	18434030	+	0	NA	TTS (NR_045573)	TTS (NR_045573)	3869	NM_001253389	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
156618	chr22	41581101	41581580	+	0	NA	intron (NM_002676, intron 5 of 7)	intron (NM_002676, intron 5 of 7)	8500	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
186947	chr5	139651571	139652340	+	0	NA	intron (NM_001317205, intron 1 of 2)	L2c|LINE|L2	966	NM_001317205	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
90040	chr16	89911401	89911600	+	0	NA	TTS (NM_014972)	TTS (NM_014972)	-7362	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
194922	chr6	34888801	34890750	+	0	NA	intron (NM_015245, intron 1 of 23)	CpG	520	NM_015245	23294		NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
120671	chr19	45101521	45101780	+	0	NA	intron (NM_019121, intron 1 of 12)	AluJb|SINE|Alu	8471	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
32498	chr10	102716121	102716580	+	0	NA	intron (NM_178858, intron 1 of 11)	intron (NM_178858, intron 1 of 11)	1714	NM_178858	118980		NM_178858	ENSG00000156398	SFXN2	SLC56A2	sideroflexin 2	protein-coding
141307	chr2	240442701	240443100	+	0	NA	intron (NM_002081, intron 1 of 8)	intron (NM_002081, intron 1 of 8)	7237	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
219955	chr8	89718101	89718530	+	0	NA	intron (NR_125822, intron 4 of 4)	L2a|LINE|L2	39396	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
103827	chr17	79220921	79221180	+	0	NA	intron (NM_001350453, intron 3 of 13)	intron (NM_001350453, intron 3 of 13)	146226	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
233829	chrX	1489671	1489830	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-35988	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
137722	chr2	197704621	197706040	+	0	NA	promoter-TSS (NM_138395)	promoter-TSS (NM_138395)	-39	NM_138395	92935		NM_138395	ENSG00000247626	MARS2	COXPD25|MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
21300	chr1	204481271	204481630	+	0	NA	intron (NM_001377334, intron 1 of 32)	AluSc8|SINE|Alu	13355	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
93194	chr17	17810551	17811280	+	0	NA	TTS (NM_001005291)	TTS (NM_001005291)	2630	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
218394	chr8	47167271	47167550	+	0	NA	Intergenic	Intergenic	-21897	NR_037168	100287846		NR_037168		LOC100287846	-	uncharacterized LOC100287846	ncRNA
32105	chr10	101211501	101211700	+	0	NA	Intergenic	Intergenic	17360	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
167173	chr3	128076601	128078300	+	0	NA	intron (NR_046645, intron 1 of 1)	intron (NR_046645, intron 1 of 1)	1640	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
110974	chr19	2960571	2961300	+	0	NA	Intergenic	AluY|SINE|Alu	-15964	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
235189	chrX	41337231	41338330	+	0	NA	non-coding (NR_126094, exon 3 of 3)	non-coding (NR_126094, exon 3 of 3)	3614	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
144136	chr20	34018301	34018700	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-24133	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
105187	chr17	82295021	82295480	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2436	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
4223	chr1	19470971	19471700	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	12960	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
227079	chr9	85522571	85522800	+	0	NA	Intergenic	Intergenic	219269	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
219605	chr8	80052501	80052700	+	0	NA	intron (NR_105037, intron 4 of 6)	intron (NR_105037, intron 4 of 6)	-22341	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
156485	chr22	41276621	41277080	+	0	NA	intron (NM_001278651, intron 3 of 16)	AluSg|SINE|Alu	9337	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
70706	chr14	103326621	103326880	+	0	NA	Intergenic	Intergenic	-7487	NM_001969	1983		NM_001969	ENSG00000100664	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding
180216	chr5	1517371	1517530	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	6510	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
69809	chr14	99208251	99208350	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	63897	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
31133	chr10	89535151	89535980	+	0	NA	promoter-TSS (NM_213606)	promoter-TSS (NM_213606)	29	NM_213606	387700		NM_213606	ENSG00000152779	SLC16A12	CJMG|CRT2|CTRCT47|MCT12	solute carrier family 16 member 12	protein-coding
71008	chr14	104750471	104751150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2337	NM_021709	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
9355	chr1	47173821	47174450	+	0	NA	Intergenic	AluSg|SINE|Alu	-5115	NR_047498	100874253		NR_047498	ENSG00000224805	LINC00853	PDZK1IP1-AS1|ncRNA-a4	long intergenic non-protein coding RNA 853	ncRNA
103321	chr17	77929151	77929850	+	0	NA	Intergenic	Intergenic	-45413	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
132522	chr2	106139051	106139350	+	0	NA	promoter-TSS (NM_001253876)	promoter-TSS (NM_001253876)	-319	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
102288	chr17	75324301	75324750	+	0	NA	intron (NM_203506, intron 3 of 4)	AluSx3|SINE|Alu	-35076	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
154265	chr22	31626251	31626350	+	0	NA	intron (NM_001326417, intron 3 of 9)	intron (NM_001326417, intron 3 of 9)	4524	NM_014338	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
62441	chr13	99325921	99326500	+	0	NA	intron (NR_026644, intron 6 of 8)	L1MB1|LINE|L1	-18811	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
200842	chr6	138162901	138163100	+	0	NA	intron (NM_020340, intron 1 of 33)	intron (NM_020340, intron 1 of 33)	1061	NM_020340	57221		NM_020340	ENSG00000112379	ARFGEF3	A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1	ARFGEF family member 3	protein-coding
157304	chr22	44488551	44489250	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	9333	NM_032287	84247		NM_032287	ENSG00000188636	RTL6	LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2	retrotransposon Gag like 6	protein-coding
184035	chr5	91369851	91369950	+	0	NA	non-coding (NR_138072, exon 8 of 8)	non-coding (NR_138072, exon 8 of 8)	10197	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
89185	chr16	88566221	88566680	+	0	NA	Intergenic	MER66B|LTR|ERV1	-3953	NM_001294340	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
185433	chr5	131168401	131168800	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2344	NR_121658	90624		NM_181705	ENSG00000186687	LYRM7	C5orf31|MC3DN8|MZM1L	LYR motif containing 7	protein-coding
41496	chr11	66247921	66248380	+	0	NA	Intergenic	Intergenic	-9144	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
216313	chr8	12713251	12714150	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-5427	NR_049875	100847066		NR_049875	ENSG00000266318	MIR5692A1	-	microRNA 5692a-1	ncRNA
157031	chr22	42560201	42560400	+	0	NA	intron (NR_104300, intron 8 of 10)	intron (NR_104300, intron 8 of 10)	6344	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
172746	chr4	2840271	2840430	+	0	NA	3' UTR (NM_003023, exon 13 of 13)	3' UTR (NM_003023, exon 13 of 13)	-3494	NM_001354759	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
187261	chr5	141493821	141494080	+	0	NA	intron (NM_018929, intron 1 of 3)	intron (NM_018929, intron 1 of 3)	4709	NM_032407	56097		NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding
141801	chr20	296521	298300	+	0	NA	promoter-TSS (NM_033089)	promoter-TSS (NM_033089)	-160	NM_033089	85364		NM_033089	ENSG00000247315	ZCCHC3	C20orf99	zinc finger CCHC-type containing 3	protein-coding
151800	chr22	18199451	18200330	+	0	NA	intron (NR_136570, intron 1 of 11)	intron (NR_136570, intron 1 of 11)	6019	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
124679	chr2	3423251	3423350	+	0	NA	intron (NM_016030, intron 4 of 11)	L1MA8|LINE|L1	43606	NM_016030	51112		NM_016030	ENSG00000171853	TRAPPC12	CGI-87|PEBAS|TTC-15|TTC15	trafficking protein particle complex subunit 12	protein-coding
99132	chr17	49258301	49258700	+	0	NA	non-coding (NR_034161, exon 3 of 3)	non-coding (NR_034161, exon 3 of 3)	10257	NR_034161	124871		NM_001007529	ENSG00000177369	FLJ40194	-	uncharacterized FLJ40194	ncRNA
147030	chr20	53604271	53604630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3904	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
134342	chr2	136118901	136120100	+	0	NA	Intergenic	Intergenic	-1351	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
210926	chr7	101233271	101233430	+	0	NA	intron (NM_014343, intron 2 of 4)	MIRc|SINE|MIR	4452	NM_014343	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
56537	chr12	116817771	116818500	+	0	NA	intron (NM_001382266, intron 7 of 10)	AluJr|SINE|Alu	63306	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
111788	chr19	4444751	4444950	+	0	NA	TTS (NM_001171091)	TTS (NM_001171091)	-1128	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
12546	chr1	108646401	108647750	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	14018	NM_001102592	113802		NM_144584	ENSG00000162639	HENMT1	C1orf59|HEN1	HEN methyltransferase 1	protein-coding
64715	chr14	34221001	34221200	+	0	NA	Intergenic	L2b|LINE|L2	241140	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
188566	chr5	157049871	157050400	+	0	NA	intron (NM_012206, intron 3 of 7)	intron (NM_012206, intron 3 of 7)	8106	NM_012206	26762		NM_012206	ENSG00000113249	HAVCR1	CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1	hepatitis A virus cellular receptor 1	protein-coding
219367	chr8	70370851	70371150	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	32390	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
225278	chr9	34456021	34456280	+	0	NA	intron (NM_001184942, intron 1 of 5)	AluSx1|SINE|Alu	2420	NM_001184942	203259		NM_147202	ENSG00000164970	FAM219A	C9orf25	family with sequence similarity 219 member A	protein-coding
11142	chr1	86739921	86740600	+	0	NA	intron (NM_001206652, intron 9 of 10)	L2a|LINE|L2	35684	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
90611	chr17	1635421	1636000	+	0	NA	intron (NM_145350, intron 10 of 10).2	intron (NM_145350, intron 10 of 10).2	-6876	NM_152346	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
64674	chr14	32075951	32077690	+	0	NA	promoter-TSS (NM_001173)	promoter-TSS (NM_001173)	-121	NR_027263	84837		NM_032751		ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	ncRNA
178823	chr4	153541621	153542150	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	75525	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
42694	chr11	72654501	72654700	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	-12140	NM_001243784	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
197629	chr6	83308971	83309130	+	0	NA	intron (NM_002395, intron 6 of 13)	L2a|LINE|L2	-115150	NM_001199917	5238		NM_015599	ENSG00000013375	PGM3	AGM1|IMD23|PAGM|PGM 3	phosphoglucomutase 3	protein-coding
212508	chr7	128688671	128688830	+	0	NA	TTS (NM_001290254)	TTS (NM_001290254)	16458	NM_001290255	346653		NM_001012454	ENSG00000205085	GARIN1A	FAM137B|FAM71F2|GARI	golgi associated RAB2 interactor 1A	protein-coding
167720	chr3	131018351	131019000	+	0	NA	exon (NM_014065, exon 4 of 6)	exon (NM_014065, exon 4 of 6)	8150	NM_014065	28990		NM_014065	ENSG00000034533	ASTE1	HT001	asteroid homolog 1	protein-coding
16230	chr1	153941101	153941300	+	0	NA	intron (NM_014856, intron 8 of 27)	intron (NM_014856, intron 8 of 27)	4056	NM_001367466	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
24827	chr10	329351	329850	+	0	NA	exon (NM_014974, exon 30 of 37)	exon (NM_014974, exon 30 of 37)	149606	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
29136	chr10	68560271	68561950	+	0	NA	intron (NM_030625, intron 1 of 11)	intron (NM_030625, intron 1 of 11)	773	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
83398	chr16	27172851	27173150	+	0	NA	Intergenic	Intergenic	-30526	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
199427	chr6	116816971	116817130	+	0	NA	intron (NM_148963, intron 1 of 5)	L1PA2|LINE|L1	12007	NM_001286354	222545		NM_148963	ENSG00000173612	GPRC6A	GPCR|bA86F4.3	G protein-coupled receptor class C group 6 member A	protein-coding
148468	chr20	64040321	64041550	+	0	NA	Intergenic	Intergenic	7208	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
173108	chr4	6424271	6424630	+	0	NA	intron (NM_001206995, intron 2 of 9)	intron (NM_001206995, intron 2 of 9)	-3332	NM_001206996	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
141665	chr2	241774501	241775350	+	0	NA	Intergenic	Intergenic	-1897	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
158798	chr3	9698521	9698780	+	0	NA	intron (NM_001077525, intron 18 of 18)	intron (NM_001077525, intron 18 of 18)	-5183	NM_001308388	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
118718	chr19	38228671	38228980	+	0	NA	intron (NM_001363579, intron 1 of 11)	CpG	870	NM_001363579	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
82662	chr16	19525321	19525580	+	0	NA	intron (NM_001323570, intron 2 of 15)	intron (NM_001323570, intron 2 of 15)	1508	NM_001323572	9738		NM_014711	ENSG00000103540	CCP110	CP110|Cep110	centriolar coiled-coil protein 110	protein-coding
60199	chr13	40422871	40423030	+	0	NA	intron (NR_024506, intron 5 of 5)	MLT1I|LTR|ERVL-MaLR	58056	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
64927	chr14	35766601	35766900	+	0	NA	intron (NM_014990, intron 4 of 40)	intron (NM_014990, intron 4 of 40)	-3819	NR_135620	107399303		NR_135620		SNORA101B	ZL4	small nucleolar RNA, H/ACA box 101B	snoRNA
96857	chr17	42023651	42023750	+	0	NA	exon (NM_001001349, exon 4 of 4)	exon (NM_001001349, exon 4 of 4)	3610	NM_001144929	28511		NM_017595	ENSG00000168256	NKIRAS2	KBRAS2|kappaB-Ras2	NFKB inhibitor interacting Ras like 2	protein-coding
188598	chr5	157181701	157182000	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	1010	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
71173	chr14	105044171	105044430	+	0	NA	Intergenic	AluSq2|SINE|Alu	21130	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
7005	chr1	31891271	31891630	+	0	NA	Intergenic	Intergenic	46368	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
38921	chr11	47443051	47443350	+	0	NA	intron (NM_005055, intron 2 of 7)	intron (NM_005055, intron 2 of 7)	5936	NM_005055	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
116283	chr19	17744751	17744850	+	0	NA	Intergenic	L1MC3|LINE|L1	-2944	NM_001384396	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
27013	chr10	26836021	26836480	+	0	NA	intron (NR_145410, intron 1 of 11)	AluSx|SINE|Alu	24708	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
10645	chr1	70227371	70228000	+	0	NA	intron (NM_001350615, intron 1 of 11)	intron (NM_001350615, intron 1 of 11)	6305	NM_001350613	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
236761	chrX	78923671	78923830	+	0	NA	Intergenic	Intergenic	-21582	NM_198333	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
227046	chr9	83970051	83970150	+	0	NA	promoter-TSS (NR_029605)	promoter-TSS (NR_029605)	-243	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
147217	chr20	57388771	57389700	+	0	NA	intron (NR_149006, intron 1 of 1)	CpG	-2161	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
86705	chr16	67543771	67543930	+	0	NA	intron (NM_024519, intron 14 of 21)	intron (NM_024519, intron 14 of 21)	6388	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
202318	chr6	157292271	157292500	+	0	NA	3' UTR (NM_018452, exon 4 of 4)	3' UTR (NM_018452, exon 4 of 4)	31134	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
156992	chr22	42505571	42506130	+	0	NA	intron (NR_027786, intron 7 of 10)	AluJo|SINE|Alu	5271	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
116912	chr19	18787371	18787800	+	0	NA	exon (NM_000095, exon 10 of 19)	exon (NM_000095, exon 10 of 19)	3720	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
137895	chr2	200856921	200857400	+	0	NA	intron (NR_027856, intron 5 of 10)	AluSx|SINE|Alu	7401	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
148496	chr20	64069601	64070200	+	0	NA	intron (NM_198723, intron 7 of 10)	intron (NM_198723, intron 7 of 10)	6702	NM_003195	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
113274	chr19	8522401	8523230	+	0	NA	exon (NM_001348355, exon 26 of 28)	exon (NM_001348355, exon 26 of 28)	-8648	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
158766	chr3	9398601	9399300	+	0	NA	intron (NM_001349451, intron 1 of 25)	intron (NM_001349451, intron 1 of 25)	1335	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
236490	chrX	71670901	71671550	+	0	NA	exon (NM_001323075, exon 5 of 6)	exon (NM_001323075, exon 5 of 6)	3523	NM_001323075	101059915		NM_001323075	ENSG00000283599	LOC101059915	-	chromosome X open reading frame 49-like	protein-coding
50218	chr12	46221621	46222280	+	0	NA	intron (NM_001278387, intron 6 of 17)	L2b|LINE|L2	44566	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
162871	chr3	49368021	49368480	+	0	NA	intron (NM_001313947, intron 2 of 3)	intron (NM_001313947, intron 2 of 3)	-9650	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
95081	chr17	33751021	33751400	+	0	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	-217450	NR_037584	100506677		NR_037584	ENSG00000265544	AA06	AA02|AA04|AA05	uncharacterized LOC100506677	pseudo
91089	chr17	3557451	3558050	+	0	NA	promoter-TSS (NM_001258205)	promoter-TSS (NM_001258205)	62	NM_001258205	162514		NM_145068	ENSG00000167723	TRPV3	FNEPPK2|OLMS|OLMS1|VRL3	transient receptor potential cation channel subfamily V member 3	protein-coding
83156	chr16	23459121	23459380	+	0	NA	Intergenic	AluY|SINE|Alu	-6061	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
183916	chr5	87393401	87394000	+	0	NA	TTS (NM_001199189)	TTS (NM_001199189)	19204	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
5383	chr1	25443271	25443630	+	0	NA	intron (NM_001282564, intron 1 of 8)	intron (NM_001282564, intron 1 of 8)	12553	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
177579	chr4	119626871	119627800	+	0	NA	promoter-TSS (NR_165235)	promoter-TSS (NR_165235)	402	NM_033430	8654		NM_001083	ENSG00000138735	PDE5A	CGB-PDE|CN5A|PDE5	phosphodiesterase 5A	protein-coding
5235	chr1	25003221	25003930	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-19928	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
22210	chr1	212470001	212470400	+	0	NA	Intergenic	Intergenic	37280	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
234943	chrX	38801051	38802150	+	0	NA	non-coding (NR_046706, exon 2 of 2)	non-coding (NR_046706, exon 2 of 2)	141	NM_001098790	58526		NM_021242	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
70223	chr14	100643051	100643550	+	0	NA	Intergenic	Intergenic	-13968	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
60027	chr13	32587101	32588100	+	0	NA	intron (NM_015032, intron 1 of 34)	CpG	1148	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
57320	chr12	121680151	121680250	+	0	NA	Intergenic	AluY|SINE|Alu	-7556	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
213077	chr7	131088921	131090050	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	17545	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
78840	chr15	99805571	99806150	+	0	NA	intron (NR_003260, intron 1 of 4)	intron (NR_003260, intron 1 of 4)	1067	NR_003260	196968		NM_194295	ENSG00000290767	DNM1P46	C15orf51|DNM1DN14.2|DNM1DN14@	dynamin 1 pseudogene 46	pseudo
9166	chr1	45584501	45585270	+	0	NA	intron (NM_001195193, intron 1 of 12)	CpG	844	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
107594	chr18	48872351	48872650	+	0	NA	Intergenic	Intergenic	70307	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
216019	chr8	9082121	9082400	+	0	NA	intron (NM_001354638, intron 6 of 7)	intron (NM_001354638, intron 6 of 7)	-23630	NR_145772	109616996		NR_145772		SNORD3I	-	small nucleolar RNA, C/D box 3I	snoRNA
7495	chr1	33295271	33296030	+	0	NA	intron (NM_152493, intron 8 of 8)	intron (NM_152493, intron 8 of 8)	25448	NM_001080438	127550		NM_001080438	ENSG00000184389	A3GALT2	A3GALT2P|IGB3S|IGBS3S	alpha 1,3-galactosyltransferase 2	protein-coding
134193	chr2	134368371	134368980	+	0	NA	intron (NM_001371457, intron 11 of 16)	L2c|LINE|L2	114603	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
148837	chr21	8398301	8400200	+	0	NA	non-coding (NR_003287, exon 3 of 3)	non-coding (NR_003287, exon 3 of 3)	2324	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
194450	chr6	33171651	33171950	+	0	NA	exon (NM_080679, exon 39 of 63).6	exon (NM_080679, exon 39 of 63).6	20667	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
206503	chr7	33459401	33459600	+	0	NA	intron (NM_001348037, intron 18 of 20)	intron (NM_001348037, intron 18 of 20)	-266481	NR_165282	55025		NM_017937	ENSG00000173862	FLJ20712	-	uncharacterized FLJ20712	ncRNA
14137	chr1	121007901	121008500	+	0	NA	intron (NR_135813, intron 2 of 2)	intron (NR_135813, intron 2 of 2)	43967	NR_135813	101929798		NR_135813	ENSG00000290904	PDE4DIPP4	CH17-118O6.3	PDE4DIP pseudogene 4	pseudo
19826	chr1	182838771	182840450	+	0	NA	promoter-TSS (NR_148933)	promoter-TSS (NR_148933)	-19	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
209700	chr7	84055151	84055290	+	0	NA	intron (NM_006080, intron 5 of 16)	L1PA3|LINE|L1	139569	NM_006080	10371		NM_006080	ENSG00000075213	SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	semaphorin 3A	protein-coding
30413	chr10	78974501	78975500	+	0	NA	intron (NR_015429, intron 3 of 7)	MIR|SINE|MIR	92448	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
54650	chr12	93025571	93025750	+	0	NA	intron (NR_040096, intron 3 of 4)	MIR|SINE|MIR	-96365	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
31880	chr10	100240601	100241250	+	0	NA	intron (NM_001303405, intron 10 of 13)	intron (NM_001303405, intron 10 of 13)	-3623	NR_002954	677800		NR_002954	ENSG00000212464	SNORA12	U108	small nucleolar RNA, H/ACA box 12	snoRNA
43922	chr11	90240351	90240750	+	0	NA	Intergenic	L1P1|LINE|L1	-10682	NR_104190	101929222		NR_104190	ENSG00000261645	DISC1FP1	Boymaw	DISC1 fusion partner 1	ncRNA
43893	chr11	88414251	88415830	+	0	NA	Intergenic	Intergenic	-77304	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
153859	chr22	30225071	30225230	+	0	NA	Intergenic	AluJr|SINE|Alu	-14044	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
1132	chr1	2143821	2144080	+	0	NA	intron (NR_146911, intron 2 of 15)	intron (NR_146911, intron 2 of 15)	39234	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
46639	chr11	128688221	128688480	+	0	NA	intron (NM_001271012, intron 1 of 6)	intron (NM_001271012, intron 1 of 6)	-1428	NR_135072	101929538		NR_135072	ENSG00000245008	LOC101929538	-	uncharacterized LOC101929538	ncRNA
125937	chr2	25169851	25169950	+	0	NA	Intergenic	L2c|LINE|L2	-1049	NM_001035256	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
223405	chr8	143927151	143927250	+	0	NA	intron (NM_201383, intron 28 of 31)	CpG	12397	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
85440	chr16	50545571	50546450	+	0	NA	Intergenic	Intergenic	-2386	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
37946	chr11	34359001	34359700	+	0	NA	Intergenic	Intergenic	-1340	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
211046	chr7	102436471	102436630	+	0	NA	intron (NM_001271819, intron 2 of 2)	intron (NM_001271819, intron 2 of 2)	2975	NM_032831	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
8973	chr1	44630201	44630400	+	0	NA	intron (NM_001319957, intron 4 of 13)	MIRc|SINE|MIR	-1668	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
39559	chr11	61126101	61126480	+	0	NA	3' UTR (NM_014207, exon 11 of 11)	3' UTR (NM_014207, exon 11 of 11)	23801	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
72773	chr15	39875001	39875200	+	0	NA	intron (NM_001271854, intron 1 of 3)	intron (NM_001271854, intron 1 of 3)	45166	NM_001271854	11245		NM_007223	ENSG00000166073	GPR176	HB-954	G protein-coupled receptor 176	protein-coding
25479	chr10	6927401	6929400	+	0	NA	Intergenic	Intergenic	148802	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
21471	chr1	205596271	205596630	+	0	NA	intron (NM_181644, intron 7 of 9)	AluSx|SINE|Alu	-27145	NR_152721	284578		NR_027086		MFSD4A-AS1	-	MFSD4A antisense RNA 1	ncRNA
86133	chr16	57685651	57685950	+	0	NA	exon (NM_001308360, exon 10 of 11)	exon (NM_001308360, exon 10 of 11)	-9006	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
123245	chr19	53187501	53187700	+	0	NA	intron (NM_024733, intron 1 of 3)	SVA_E|Retroposon|SVA	5758	NM_024733	79788		NM_024733	ENSG00000197497	ZNF665	ZFP160L	zinc finger protein 665	protein-coding
24446	chr1	243784901	243785100	+	0	NA	intron (NM_005465, intron 2 of 13)	AluJo|SINE|Alu	58282	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
90319	chr17	1116521	1117050	+	0	NA	intron (NM_001322840, intron 2 of 22).2	MIRb|SINE|MIR	-7683	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
199902	chr6	127862051	127862700	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-7187	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
80790	chr16	3262271	3262630	+	0	NA	Intergenic	AluSx|SINE|Alu	-1318	NR_033904	283876		NR_033904	ENSG00000281005	LINC00921	-	long intergenic non-protein coding RNA 921	ncRNA
136256	chr2	174632401	174633190	+	0	NA	intron (NM_001375832, intron 1 of 8)	intron (NM_001375832, intron 1 of 8)	1810	NM_001375837	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
144278	chr20	34658901	34659300	+	0	NA	intron (NM_080476, intron 1 of 11)	SVA_D|Retroposon|SVA	17992	NM_080476	128869		NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1|GPIBD21|NEDBSS|PIG-U	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
158562	chr3	4503471	4503730	+	0	NA	intron (NM_002222, intron 2 of 57)	MER20|DNA|hAT-Charlie	10252	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
133434	chr2	119355871	119356030	+	0	NA	intron (NM_001322329, intron 1 of 6)	L1MC|LINE|L1	10792	NM_001017927	130355		NM_001017927	ENSG00000186132	C2orf76	AIM29	chromosome 2 open reading frame 76	protein-coding
214625	chr7	150734071	150734230	+	0	NA	intron (NM_001199577, intron 3 of 5)	intron (NM_001199577, intron 3 of 5)	-3198	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
80765	chr16	3170251	3171100	+	0	NA	Intergenic	CpG	-17529	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
186968	chr5	139672501	139672700	+	0	NA	intron (NM_001317203, intron 2 of 3)	intron (NM_001317203, intron 2 of 3)	-2843	NM_001317208	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
159744	chr3	16048651	16048950	+	0	NA	Intergenic	L2c|LINE|L2	-125880	NM_054110	117248		NM_054110	ENSG00000131386	GALNT15	GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
56771	chr12	120165321	120165580	+	0	NA	intron (NM_006836, intron 16 of 57)	AluSx|SINE|Alu	-9951	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
199652	chr6	122405351	122405730	+	0	NA	intron (NM_001135564, intron 1 of 11)	LTR41|LTR|ERVL	5888	NM_001243094	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
18686	chr1	167401301	167401600	+	0	NA	intron (NM_001198786, intron 11 of 14)	intron (NM_001198786, intron 11 of 14)	72380	NM_001198783	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
191191	chr6	5262351	5262450	+	0	NA	intron (NM_001374875, intron 1 of 6)	AluSx|SINE|Alu	887	NM_001374879	10667		NM_006567	ENSG00000145982	FARS2	COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS	phenylalanyl-tRNA synthetase 2, mitochondrial	protein-coding
213393	chr7	135993701	135994500	+	0	NA	Intergenic	AluSx|SINE|Alu	-16741	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
87863	chr16	77211071	77211430	+	0	NA	exon (NM_001129979, exon 7 of 11)	exon (NM_001129979, exon 7 of 11)	11842	NM_001129979	100130958		NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
94442	chr17	29177871	29178330	+	0	NA	intron (NM_203318, intron 1 of 40)	intron (NM_203318, intron 1 of 40)	-1327	NM_001346767	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
192638	chr6	26145501	26145700	+	0	NA	Intergenic	AluY|SINE|Alu	-10729	NM_005321	3008		NM_005321	ENSG00000168298	H1-4	H1.4|H1E|H1F4|H1s-4|HIST1H1E|RMNS|dJ221C16.5	H1.4 linker histone, cluster member	protein-coding
159643	chr3	15313371	15314250	+	0	NA	intron (NM_001018009, intron 2 of 8)	MER3|DNA|hAT-Charlie	18776	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
101829	chr17	73644171	73644330	+	0	NA	5' UTR (NM_001144952, exon 1 of 45)	5' UTR (NM_001144952, exon 1 of 45)	195	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
124697	chr2	3574571	3576100	+	0	NA	promoter-TSS (NM_001011)	promoter-TSS (NM_001011)	75	NM_001011	6201		NM_001011	ENSG00000171863	RPS7	DBA8|S7|eS7	ribosomal protein S7	protein-coding
57579	chr12	122336101	122336530	+	0	NA	intron (NM_001247997, intron 12 of 25)	intron (NM_001247997, intron 12 of 25)	-59227	NR_045382	100507066		NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
231827	chr9	132580421	132581030	+	0	NA	Intergenic	CpG	-1881	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
158475	chr22	50756601	50757680	+	0	NA	promoter-TSS (NR_026981)	promoter-TSS (NR_026981)	54	NR_026981	284942		NM_203302	ENSG00000291064	RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
151678	chr22	17108951	17109050	+	0	NA	exon (NM_001289905, exon 12 of 12)	exon (NM_001289905, exon 12 of 12)	12360	NM_031890	27439		NM_031890	ENSG00000183307	TMEM121B	CECR6	transmembrane protein 121B	protein-coding
143309	chr20	25346421	25347030	+	0	NA	intron (NM_001042472, intron 1 of 12)	AluY|SINE|Alu	44110	NM_015600	26090		NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12	abhydrolase domain containing 12, lysophospholipase	protein-coding
126833	chr2	30862071	30862270	+	0	NA	Intergenic	Intergenic	-54724	NM_144575	92291		NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
56948	chr12	120480101	120480400	+	0	NA	intron (NM_001037494, intron 1 of 2)	L1ME3G|LINE|L1	10408	NM_001037494	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
47924	chr12	6780051	6780150	+	0	NA	Intergenic	Intergenic	7580	NM_002286	3902		NM_002286	ENSG00000089692	LAG3	CD223	lymphocyte activating 3	protein-coding
185221	chr5	121971371	121971530	+	0	NA	intron (NM_152546, intron 1 of 7)	L2b|LINE|L2	9475	NM_152546	153443		NM_152546	ENSG00000151304	SRFBP1	BUD22|P49|Rlb1|STRAP|p49/STRAP	serum response factor binding protein 1	protein-coding
132726	chr2	109205651	109205750	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-64112	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
204173	chr7	2431601	2432680	+	0	NA	intron (NM_018641, intron 1 of 1)	AluYc|SINE|Alu	28529	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
237574	chrX	123184671	123185100	+	0	NA	intron (NM_001256743, intron 1 of 3)	intron (NM_001256743, intron 1 of 3)	607	NM_001256743	2892		NM_000828	ENSG00000125675	GRIA3	GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94|MRXSW|iGluR3	glutamate ionotropic receptor AMPA type subunit 3	protein-coding
213099	chr7	131122671	131122830	+	0	NA	intron (NM_001145354, intron 1 of 18)	AluYk4|SINE|Alu	12656	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
186640	chr5	138559121	138560200	+	0	NA	promoter-TSS (NR_145752)	promoter-TSS (NR_145752)	-619	NR_145752	109617013		NR_145752	ENSG00000222937	SNORD63B	-	small nucleolar RNA, C/D box 63B	snoRNA
147854	chr20	62809401	62809700	+	0	NA	intron (NM_007346, intron 3 of 6)	intron (NM_007346, intron 3 of 6)	-3963	NR_102430	101409261		NR_102430		OGFR-AS1	-	OGFR antisense RNA 1	ncRNA
9536	chr1	51503451	51503750	+	0	NA	intron (NM_001981, intron 1 of 24)	AluSq|SINE|Alu	15666	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
12308	chr1	100925971	100926330	+	0	NA	intron (NM_133496, intron 8 of 10)	intron (NM_133496, intron 8 of 10)	30060	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
177411	chr4	112289721	112290130	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4021	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
74690	chr15	62163851	62164100	+	0	NA	exon (NM_001007595, exon 2 of 2)	exon (NM_001007595, exon 2 of 2)	1310	NM_001007595	388125		NM_001007595	ENSG00000205502	C2CD4B	FAM148B|NLF2	C2 calcium dependent domain containing 4B	protein-coding
129418	chr2	69306821	69308050	+	0	NA	Intergenic	CpG	79792	NM_002056	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
151351	chr21	45702651	45702830	+	0	NA	intron (NM_001382286, intron 2 of 16)	Tigger1|DNA|TcMar-Tigger	-45274	NM_001348243	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
172542	chr4	2370621	2370880	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	-5936	NM_001172659	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
78134	chr15	90390771	90391550	+	0	NA	intron (NM_003870, intron 2 of 37)	AluJb|SINE|Alu	2918	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
79268	chr16	519021	519280	+	0	NA	intron (NM_001370401, intron 11 of 14)	intron (NM_001370401, intron 11 of 14)	8257	NR_024121	64493		NR_024121		LINC00235	C16orf10|LA16c-356B8.1|NCRNA00235	long intergenic non-protein coding RNA 235	ncRNA
165517	chr3	100337721	100338380	+	0	NA	intron (NM_020202, intron 1 of 9)	AluJo|SINE|Alu	3293	NM_020202	56954		NM_020202	ENSG00000114021	NIT2	HEL-S-8a	nitrilase family member 2	protein-coding
231545	chr9	131474721	131475180	+	0	NA	exon (NM_001384822, exon 16 of 31)	exon (NM_001384822, exon 16 of 31)	-10715	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
19447	chr1	174798371	174798530	+	0	NA	intron (NM_001366447, intron 18 of 20)	intron (NM_001366447, intron 18 of 20)	-1288	NM_001330989	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
47677	chr12	6346601	6347050	+	0	NA	TTS (NM_001038)	TTS (NM_001038)	-4749	NM_001346092	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
141350	chr2	240612801	240613000	+	0	NA	intron (NM_001195381, intron 2 of 5)	intron (NM_001195381, intron 2 of 5)	7470	NM_001195381	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
205986	chr7	26182201	26183100	+	0	NA	intron (NM_004289, intron 2 of 3)	L1MEi|LINE|L1	18096	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
40033	chr11	62680551	62681330	+	0	NA	Intergenic	Intergenic	-1823	NM_001286078	51035		NM_015853	ENSG00000162191	UBXN1	2B28|SAKS1|UBXD10	UBX domain protein 1	protein-coding
143003	chr20	20452351	20453000	+	0	NA	intron (NM_020343, intron 37 of 39)	CpG	84571	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
213142	chr7	131502451	131502550	+	0	NA	3' UTR (NM_001018111, exon 9 of 9)	3' UTR (NM_001018111, exon 9 of 9)	54128	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
174322	chr4	38663151	38665480	+	0	NA	non-coding (NR_026804, exon 1 of 8)	non-coding (NR_026804, exon 1 of 8)	116	NM_016531	51274		NM_016531	ENSG00000109787	KLF3	BKLF	KLF transcription factor 3	protein-coding
46331	chr11	125494721	125494980	+	0	NA	promoter-TSS (NR_164146)	promoter-TSS (NR_164146)	-364	NR_164146	403312		NM_203452	ENSG00000255537	LOC403312	-	putative uncharacterized protein MGC39545	ncRNA
91955	chr17	7381071	7381880	+	0	NA	intron (NM_001251902, intron 1 of 12).2	intron (NM_001251902, intron 1 of 12).2	386	NM_003985	8711		NM_003985	ENSG00000174292	TNK1	KOS1	tyrosine kinase non receptor 1	protein-coding
9704	chr1	53100051	53100350	+	0	NA	intron (NM_001287595, intron 5 of 10)	intron (NM_001287595, intron 5 of 10)	37987	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
54417	chr12	90854151	90854330	+	0	NA	Intergenic	Intergenic	-63783	NR_038868	439916		NM_001039384	ENSG00000196243	LINC00615	C12orf37	long intergenic non-protein coding RNA 615	ncRNA
116859	chr19	18612671	18613330	+	0	NA	exon (NM_012109, exon 1 of 8)	exon (NM_012109, exon 1 of 8)	130	NM_012109	25789		NM_012109	ENSG00000105696	TMEM59L	BSMAP|C19orf4	transmembrane protein 59 like	protein-coding
1562	chr1	3501401	3502250	+	0	NA	exon (NM_001409, exon 18 of 37)	exon (NM_001409, exon 18 of 37)	47160	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
74665	chr15	61856271	61856650	+	0	NA	intron (NM_017684, intron 80 of 82)	intron (NM_017684, intron 80 of 82)	126542	NR_146448	100506530		NR_146448	ENSG00000259284	LINC02349	-	long intergenic non-protein coding RNA 2349	ncRNA
73815	chr15	48877601	48878590	+	0	NA	promoter-TSS (NM_014335)	promoter-TSS (NM_014335)	-39	NM_014335	23741		NM_014335	ENSG00000255302	EID1	C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21	EP300 interacting inhibitor of differentiation 1	protein-coding
5499	chr1	25754601	25755200	+	0	NA	intron (NM_001385185, intron 4 of 10)	intron (NM_001385185, intron 4 of 10)	-45293	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
129685	chr2	70473401	70473600	+	0	NA	intron (NR_046798, intron 1 of 2)	CR1_Mam|LINE|CR1	8140	NR_046798	100874273		NR_046798	ENSG00000224606	TGFA-IT1	-	TGFA intronic transcript 1	ncRNA
138843	chr2	216505401	216506000	+	0	NA	Intergenic	Intergenic	6856	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
165491	chr3	99872851	99873150	+	0	NA	intron (NM_182909, intron 4 of 5)	intron (NM_182909, intron 4 of 5)	3173	NM_001370247	11259		NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
91437	chr17	4744171	4744330	+	0	NA	exon (NM_001267822, exon 9 of 14)	exon (NM_001267822, exon 9 of 14)	4235	NM_032265	84225		NM_032265	ENSG00000141497	ZMYND15	SPGF14	zinc finger MYND-type containing 15	protein-coding
195669	chr6	38163171	38163330	+	0	NA	Intergenic	Intergenic	-318346	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
153283	chr22	24162721	24162980	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-18637	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
188762	chr5	157594571	157595130	+	0	NA	Intergenic	Intergenic	-19075	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
7239	chr1	32340651	32340950	+	0	NA	Intergenic	AluSz|SINE|Alu	-4567	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
201844	chr6	150156801	150157450	+	0	NA	intron (NM_030949, intron 1 of 3)	intron (NM_030949, intron 1 of 3)	14081	NM_030949	81706		NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1 regulatory inhibitor subunit 14C	protein-coding
2375	chr1	9410551	9411680	+	0	NA	Intergenic	Intergenic	17801	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
127788	chr2	44218821	44219130	+	0	NA	intron (NM_177968, intron 5 of 5)	intron (NM_177968, intron 5 of 5)	50100	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
47368	chr12	2358171	2358600	+	0	NA	intron (NM_199460, intron 3 of 49)	intron (NM_199460, intron 3 of 49)	88609	NR_046769	100874370		NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
3559	chr1	16156851	16156950	+	0	NA	promoter-TSS (NM_001329090)	promoter-TSS (NM_001329090)	-831	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
179781	chr5	323471	323630	+	0	NA	intron (NM_001377239, intron 1 of 10)	intron (NM_001377239, intron 1 of 10)	940	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
189544	chr5	173963821	173964680	+	0	NA	Intergenic	LTR9D|LTR|ERV1	-24920	NM_001144954	133491		NM_001144954	ENSG00000185056	C5orf47	-	chromosome 5 open reading frame 47	protein-coding
113992	chr19	10833501	10834300	+	0	NA	intron (NM_006858, intron 3 of 3)	AluSx1|SINE|Alu	1840	NR_104015	11018		NM_006858	ENSG00000099203	TMED1	IL1RL1LG|Il1rl1l|Tp24|p24g1	transmembrane p24 trafficking protein 1	protein-coding
153912	chr22	30314771	30315350	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	11881	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
12742	chr1	109565701	109566100	+	0	NA	intron (NM_006496, intron 1 of 8)	intron (NM_006496, intron 1 of 8)	17285	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
156274	chr22	40450121	40450600	+	0	NA	intron (NM_001282661, intron 4 of 13)	intron (NM_001282661, intron 4 of 13)	13080	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
59030	chr13	20411901	20412630	+	0	NA	intron (NM_015974, intron 6 of 7)	L3|LINE|CR1	21581	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
122976	chr19	50795671	50796430	+	0	NA	TTS (NM_033068)	TTS (NM_033068)	3075	NR_003068	692203		NR_003068	ENSG00000221381	SNORD88B	HBII-180B	small nucleolar RNA, C/D box 88B	snoRNA
195580	chr6	37515621	37517100	+	0	NA	intron (NR_126057, intron 1 of 3)	intron (NR_126057, intron 1 of 3)	9012	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
207340	chr7	44064701	44065380	+	0	NA	3' UTR (NM_001284313, exon 11 of 11)	3' UTR (NM_001284313, exon 11 of 11)	527	NM_000290	5224		NM_000290	ENSG00000164708	PGAM2	GSD10|PGAM-M|PGAMM	phosphoglycerate mutase 2	protein-coding
106470	chr18	14172101	14172380	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-6857	NR_040113	440482		NM_001029999		ANKRD20A5P	ANKRD20A5	ankyrin repeat domain 20 family member A5, pseudogene	pseudo
233410	chr9	137577351	137577450	+	0	NA	intron (NM_001346386, intron 1 of 7)	intron (NM_001346386, intron 1 of 7)	1192	NM_001346373	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
44933	chr11	116691671	116692050	+	0	NA	Intergenic	Intergenic	52438	NR_135069	101929011		NR_135069	ENSG00000237937	LINC02702	LASER	long intergenic non-protein coding RNA 2702	ncRNA
45048	chr11	117045901	117046200	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	52378	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
207875	chr7	50380421	50380900	+	0	NA	intron (NM_001220771, intron 3 of 3)	intron (NM_001220771, intron 3 of 3)	61612	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
186996	chr5	139742521	139742980	+	0	NA	intron (NR_105053, intron 2 of 2)	(TGAGTG)n|Simple_repeat|Simple_repeat	3473	NR_105053	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
177597	chr4	120921721	120923530	+	0	NA	5' UTR (NM_018699, exon 1 of 16)	5' UTR (NM_018699, exon 1 of 16)	101	NM_001379106	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
165760	chr3	105754171	105754600	+	0	NA	non-coding (NR_135806, exon 5 of 21)	non-coding (NR_135806, exon 5 of 21)	113206	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
28459	chr10	49217351	49217450	+	0	NA	Intergenic	AluJb|SINE|Alu	-29009	NM_001288743	170371		NM_001010863	ENSG00000204161	TMEM273	C10orf128	transmembrane protein 273	protein-coding
5009	chr1	24435721	24435980	+	0	NA	intron (NM_001322862, intron 3 of 12)	MLT1A0|LTR|ERVL-MaLR	19825	NM_001322857	57185		NM_020448	ENSG00000001461	NIPAL3	DJ462O23.2|NPAL3|SLC57A5	NIPA like domain containing 3	protein-coding
99676	chr17	50734801	50736130	+	0	NA	intron (NM_001330330, intron 1 of 10)	(TTTTCC)n|Simple_repeat|Simple_repeat	15862	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
139931	chr2	230781121	230782330	+	0	NA	intron (NM_016289, intron 2 of 8)	intron (NM_016289, intron 2 of 8)	68177	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
232673	chr9	136511401	136511850	+	0	NA	intron (NM_017617, intron 15 of 33)	intron (NM_017617, intron 15 of 33)	8001	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
145140	chr20	38825721	38825980	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	20153	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
122588	chr19	49699871	49700200	+	0	NA	intron (NR_108072, intron 5 of 20)	AluY|SINE|Alu	8539	NM_001378484	126129		NM_152359	ENSG00000169169	CPT1C	CATL1|CPT I-C|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73	carnitine palmitoyltransferase 1C	protein-coding
2327	chr1	9181271	9181650	+	0	NA	promoter-TSS (NR_132738)	promoter-TSS (NR_132738)	-744	NR_132738	102724571		NR_132738	ENSG00000234546	LNCTAM34A	GUARDIN|LINC01759|TP53LC18	long non coding transcriptional activator of miR34a	ncRNA
35154	chr11	745651	745950	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-1664	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
27196	chr10	28567471	28568000	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	34617	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
204720	chr7	5548771	5549930	+	0	NA	Intergenic	L3|LINE|CR1	-18749	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
86880	chr16	67980101	67980600	+	0	NA	exon (NM_001129758, exon 1 of 10)	exon (NM_001129758, exon 1 of 10)	149	NM_001370198	64180		NM_022357	ENSG00000141096	DPEP3	MBD3	dipeptidase 3	protein-coding
138221	chr2	202753671	202754030	+	0	NA	intron (NM_173511, intron 4 of 7)	L1PA8A|LINE|L1	75384	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
50142	chr12	45728501	45730100	+	0	NA	promoter-TSS (NM_001347839)	promoter-TSS (NM_001347839)	-406	NM_152641	196528		NM_152641	ENSG00000189079	ARID2	BAF200|CSS6|SMARCF3|ZIPZAP|p200	AT-rich interaction domain 2	protein-coding
118273	chr19	35271971	35273050	+	0	NA	intron (NM_001321150, intron 5 of 7)	L2a|LINE|L2	3548	NM_207291	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
221708	chr8	127190251	127190550	+	0	NA	intron (NR_120364, intron 1 of 2)	MER5B|DNA|hAT-Charlie	7227	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
169889	chr3	177547971	177548330	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	106229	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
212621	chr7	129262371	129262730	+	0	NA	intron (NM_001130720, intron 1 of 16)	MER72|LTR|ERV1	37520	NM_001130720	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
96658	chr17	40638051	40638150	+	0	NA	intron (NM_003079, intron 4 of 10)	intron (NM_003079, intron 4 of 10)	9718	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
85942	chr16	57146401	57146900	+	0	NA	intron (NM_152727, intron 15 of 15)	intron (NM_152727, intron 15 of 15)	35900	NM_001354098	80011		NM_024946	ENSG00000172775	PSME3IP1	C16orf94|CDA018|CDA10|FAM192A|NIP30|PIP30	proteasome activator subunit 3 interacting protein 1	protein-coding
172797	chr4	2956471	2956630	+	0	NA	intron (NM_001291978, intron 3 of 17)	intron (NM_001291978, intron 3 of 17)	6856	NM_001291978	8602		NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
220195	chr8	95338071	95338300	+	0	NA	intron (NR_038208, intron 2 of 3)	intron (NR_038208, intron 2 of 3)	-68984	NM_177965	157657		NM_177965	ENSG00000156172	CFAP418	BBS21|C8orf37|CORD16|FAP418|MOT25|RP64|smalltalk	cilia and flagella associated protein 418	protein-coding
111972	chr19	4864401	4864800	+	0	NA	intron (NM_005817, intron 1 of 7)	AluSz|SINE|Alu	3067	NM_001164194	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
162399	chr3	48194271	48194880	+	0	NA	Intergenic	Intergenic	-1989	NR_039645	100616407		NR_039645	ENSG00000265483	MIR4443	mir-4443	microRNA 4443	ncRNA
225713	chr9	36747221	36747300	+	0	NA	Intergenic	MIRb|SINE|MIR	76339	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA
222924	chr8	142985221	142985750	+	0	NA	intron (NR_026913, intron 1 of 1)	intron (NR_026913, intron 1 of 1)	-10343	NR_102426	100128627		NR_102426		CDC42P3	-	CDC42 pseudogene 3	pseudo
43420	chr11	77470321	77470580	+	0	NA	intron (NM_001376282, intron 1 of 15)	L2b|LINE|L2	3644	NM_001376277	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
155141	chr22	37657871	37659730	+	0	NA	promoter-TSS (NM_020315)	promoter-TSS (NM_020315)	77	NM_020315	57026		NM_020315	ENSG00000241360	PDXP	CIN|PLP|dJ37E16.5	pyridoxal phosphatase	protein-coding
78515	chr15	92939921	92940580	+	0	NA	intron (NM_001042572, intron 7 of 12)	AluJo|SINE|Alu	35851	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
97192	chr17	42685571	42686400	+	0	NA	exon (NM_003632, exon 6 of 24)	exon (NM_003632, exon 6 of 24)	3454	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
135762	chr2	169593121	169593700	+	0	NA	intron (NM_004792, intron 1 of 13)	AluSq2|SINE|Alu	9059	NM_004792	9360		NM_004792	ENSG00000138398	PPIG	CARS-Cyp|CYP|SCAF10|SRCyp	peptidylprolyl isomerase G	protein-coding
177742	chr4	122503201	122503600	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-46675	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
205578	chr7	21361371	21361830	+	0	NA	Intergenic	Intergenic	-66483	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
151857	chr22	18580251	18580550	+	0	NA	Intergenic	AluSx|SINE|Alu	31519	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
185843	chr5	132474711	132475800	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	15518	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
29672	chr10	72038451	72038750	+	0	NA	Intergenic	LTR40a|LTR|ERVL	49951	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
200432	chr6	135014101	135015180	+	0	NA	intron (NM_001363686, intron 4 of 18)	intron (NM_001363686, intron 4 of 18)	-35208	NR_037435	100500880		NR_037435	ENSG00000283409	MIR3662	mir-3662	microRNA 3662	ncRNA
153666	chr22	28881701	28882000	+	0	NA	Intergenic	L1MB7|LINE|L1	-1722	NM_001206998	84133		NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
215911	chr8	8177571	8177930	+	0	NA	intron (NR_147089, intron 2 of 3)	HERVE-int|LTR|ERV1	49753	NR_147089	105379219		NR_147089		FAM85B	lncRNA-HEIM	family with sequence similarity 85 member B	ncRNA
176152	chr4	83214121	83214380	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	70548	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
228890	chr9	112747071	112747430	+	0	NA	Intergenic	Intergenic	-3510	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
76766	chr15	76991951	76992250	+	0	NA	Intergenic	Intergenic	-2580	NM_001321137	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
137526	chr2	197203551	197203850	+	0	NA	intron (NM_153697, intron 1 of 9)	L1MB5|LINE|L1	5709	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
120945	chr19	45684421	45684680	+	0	NA	TTS (NM_001308418)	TTS (NM_001308418)	7403	NM_001369752	6633		NM_004597	ENSG00000125743	SNRPD2	SMD2|SNRPD1|Sm-D2	small nuclear ribonucleoprotein D2 polypeptide	protein-coding
232774	chr9	136685721	136685980	+	0	NA	intron (NM_006412, intron 1 of 5)	intron (NM_006412, intron 1 of 5)	1607	NM_001012727	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
165336	chr3	88057851	88059800	+	0	NA	promoter-TSS (NM_001366097)	promoter-TSS (NM_001366097)	171	NM_003663	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
166864	chr3	123518871	123519030	+	0	NA	intron (NM_001329784, intron 6 of 8)	AluSg|SINE|Alu	65667	NM_001329787	201562		NM_198402	ENSG00000206527	HACD2	PTPLB	3-hydroxyacyl-CoA dehydratase 2	protein-coding
70502	chr14	102182271	102182450	+	0	NA	intron (NM_001353659, intron 1 of 1)	intron (NM_001353659, intron 1 of 1)	42463	NM_001353680	91833		NM_144574	ENSG00000140153	WDR20	Bun107|DMR	WD repeat domain 20	protein-coding
14631	chr1	145464931	145466900	+	0	NA	Intergenic	Intergenic	-60137	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
32733	chr10	104302171	104302750	+	0	NA	3' UTR (NM_001191014, exon 5 of 5)	3' UTR (NM_001191014, exon 5 of 5)	-20904	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
225614	chr9	36193851	36194330	+	0	NA	intron (NM_001184762, intron 1 of 2)	AluSx1|SINE|Alu	3169	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
170466	chr3	185925271	185925650	+	0	NA	intron (NM_001243879, intron 2 of 7)	intron (NM_001243879, intron 2 of 7)	12554	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
31705	chr10	97647671	97647830	+	0	NA	intron (NM_018425, intron 1 of 8)	intron (NM_018425, intron 1 of 8)	7064	NM_018425	55361		NM_018425	ENSG00000155252	PI4K2A	NEDMSB|PI4KII|PIK42A	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
110127	chr19	1591671	1594230	+	0	NA	promoter-TSS (NM_001281454)	promoter-TSS (NM_001281454)	-85	NM_001281453	53615		NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
211079	chr7	102481221	102481680	+	0	NA	3' UTR (NM_001277335, exon 20 of 20)	3' UTR (NM_001277335, exon 20 of 20)	-2528	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
7202	chr1	32282821	32283480	+	0	NA	intron (NM_001042771, intron 12 of 12)	AluSg|SINE|Alu	-8933	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
150983	chr21	44336551	44336850	+	0	NA	intron (NM_001271440, intron 2 of 6)	intron (NM_001271440, intron 2 of 6)	1638	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
153698	chr22	29267401	29269050	+	0	NA	promoter-TSS (NM_001329536)	promoter-TSS (NM_001329536)	-43	NM_001163286	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
113618	chr19	10317401	10317600	+	0	NA	exon (NM_001366174, exon 14 of 14)	exon (NM_001366174, exon 14 of 14)	-1485	NM_001031734	112812		NM_080665	ENSG00000267673	FDX2	FDX1L|MEOAL	ferredoxin 2	protein-coding
16954	chr1	155931151	155932130	+	0	NA	intron (NM_014949, intron 2 of 13)	AluJb|SINE|Alu	2773	NM_014949	22889		NM_014949	ENSG00000132680	KHDC4	BLOM7|KIAA0907|SNORA80EHG	KH domain containing 4, pre-mRNA splicing factor	protein-coding
110292	chr19	1830471	1830630	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	8461	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
150212	chr21	39388301	39389350	+	0	NA	intron (NM_001146218, intron 1 of 4)	CpG	1062	NR_146616	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
148447	chr20	64001121	64001380	+	0	NA	intron (NM_012469, intron 9 of 20)	intron (NM_012469, intron 9 of 20)	20118	NM_012469	24148		NM_012469	ENSG00000101161	PRPF6	ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6	pre-mRNA processing factor 6	protein-coding
25600	chr10	8056811	8057830	+	0	NA	intron (NM_001002295, intron 2 of 5)	intron (NM_001002295, intron 2 of 5)	2632	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
122949	chr19	50720771	50721130	+	0	NA	Intergenic	Intergenic	-1148	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
23006	chr1	226149401	226150050	+	0	NA	intron (NR_146443, intron 1 of 1)	AluSx3|SINE|Alu	1722	NR_146443	107985353		NR_146443	ENSG00000234478	ACBD3-AS1	-	ACBD3 antisense RNA 1	ncRNA
211373	chr7	105005171	105005330	+	0	NA	Intergenic	AluSz|SINE|Alu	8891	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
227097	chr9	85729901	85730450	+	0	NA	intron (NM_001330701, intron 1 of 25)	LTR67B|LTR|ERVL	11779	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
113485	chr19	10027401	10028000	+	0	NA	Intergenic	Intergenic	-10654	NR_049855	100847093		NR_049855	ENSG00000266204	MIR5589	-	microRNA 5589	ncRNA
125630	chr2	19356421	19357850	+	0	NA	intron (NM_145260, intron 1 of 2)	CpG	1488	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
63314	chr13	113999321	113999780	+	0	NA	intron (NM_001320822, intron 20 of 23).2	intron (NM_001320822, intron 20 of 23).2	-25474	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
5032	chr1	24510851	24511150	+	0	NA	intron (NM_001251978, intron 1 of 4)	Tigger1|DNA|TcMar-Tigger	-3314	NM_001251980	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
219348	chr8	70252851	70252950	+	0	NA	intron (NM_001321713, intron 2 of 21)	AmnSINE1|SINE|5S-Deu-L2	150490	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
170498	chr3	186151101	186151430	+	0	NA	intron (NM_001346, intron 24 of 24)	A-rich|Low_complexity|Low_complexity	-42176	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
225136	chr9	33637971	33638130	+	0	NA	Intergenic	Intergenic	13825	NR_003573	304		NR_003573		ANXA2P2	ANX2L2|ANX2P2|LPC2B	annexin A2 pseudogene 2	pseudo
231321	chr9	130112521	130113180	+	0	NA	intron (NM_001136558, intron 15 of 18)	AluJb|SINE|Alu	31369	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
194407	chr6	33027801	33028200	+	0	NA	Intergenic	Intergenic	-18409	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
209757	chr7	87209071	87209430	+	0	NA	intron (NR_138030, intron 1 of 3)	THE1D|LTR|ERVL-MaLR	10482	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
139759	chr2	229924051	229924150	+	0	NA	promoter-TSS (NM_001348335)	promoter-TSS (NM_001348335)	-920	NM_001348335	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
127294	chr2	38745111	38746360	+	0	NA	intron (NM_001195446, intron 6 of 6)	intron (NM_001195446, intron 6 of 6)	5626	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
193171	chr6	29710401	29710750	+	0	NA	Intergenic	Intergenic	-12765	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
72253	chr15	30554371	30554530	+	0	NA	intron (NM_001355476, intron 2 of 18)	MIRb|SINE|MIR	2372	NM_001355476	727909		NM_001355476	ENSG00000178115	GOLGA8Q	-	golgin A8 family member Q	protein-coding
118540	chr19	36112421	36112680	+	0	NA	intron (NM_001302757, intron 2 of 3)	L2a|LINE|L2	1347	NM_001302757	728361		NM_001270948	ENSG00000105261	OVOL3	HOVO3	ovo like zinc finger 3	protein-coding
222042	chr8	130244221	130245440	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	51703	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
208041	chr7	55953201	55953600	+	0	NA	intron (NM_015969, intron 2 of 2)	intron (NM_015969, intron 2 of 2)	1523	NM_015969	51373		NM_015969	ENSG00000239789	MRPS17	HSPC011|MRP-S17|RPMS17|S17mt|uS17m	mitochondrial ribosomal protein S17	protein-coding
62057	chr13	91398171	91400700	+	0	NA	intron (NM_004466, intron 1 of 7)	CpG	814	NM_004466	2262		NM_004466	ENSG00000179399	GPC5	-	glypican 5	protein-coding
51645	chr12	53012271	53012830	+	0	NA	intron (NM_001300821, intron 1 of 14)	AluSp|SINE|Alu	6094	NM_001330654	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
29225	chr10	69053121	69053580	+	0	NA	Intergenic	L2b|LINE|L2	-34253	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
175184	chr4	56424851	56425550	+	0	NA	intron (NR_156493, intron 1 of 10)	intron (NR_156493, intron 1 of 10)	10415	NM_002703	5471		NM_002703	ENSG00000128059	PPAT	ATASE|GPAT|PRAT	phosphoribosyl pyrophosphate amidotransferase	protein-coding
4376	chr1	20727901	20728350	+	0	NA	intron (NM_001103161, intron 1 of 9)	intron (NM_001103161, intron 1 of 9)	4578	NM_001103160	400745		NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
226203	chr9	65384221	65384550	+	0	NA	Intergenic	Intergenic	-99176	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
27358	chr10	30709371	30709550	+	0	NA	intron (NR_036438, intron 8 of 9)	intron (NR_036438, intron 8 of 9)	-13759	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
90117	chr16	90109951	90110600	+	0	NA	intron (NR_126161, intron 2 of 3)	MER57A-int|LTR|ERV1	8011	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
56251	chr12	111998101	111998300	+	0	NA	intron (NM_138341, intron 2 of 9)	MER65C|LTR|ERV1	14965	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
38174	chr11	36343471	36343830	+	0	NA	intron (NM_001160167, intron 1 of 8)	LTR82A|LTR|ERVL	-32335	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
222199	chr8	133047371	133048580	+	0	NA	intron (NM_001045556, intron 5 of 8)	intron (NM_001045556, intron 5 of 8)	-1394	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
93002	chr17	17183751	17184330	+	0	NA	intron (NM_201274, intron 23 of 23)	intron (NM_201274, intron 23 of 23)	22293	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
173824	chr4	18075871	18076180	+	0	NA	Intergenic	LTR50|LTR|ERVL	-54150	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
199535	chr6	118787771	118788530	+	0	NA	Intergenic	Intergenic	5442	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
162093	chr3	46897201	46897400	+	0	NA	intron (NM_001184744, intron 4 of 14)	MIR|SINE|MIR	15051	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
11218	chr1	88870951	88871250	+	0	NA	intron (NM_001514, intron 2 of 6)	AluSx|SINE|Alu	20467	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
48469	chr12	9760301	9762300	+	0	NA	promoter-TSS (NM_001781)	promoter-TSS (NM_001781)	-399	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
160395	chr3	28089371	28090030	+	0	NA	Intergenic	Intergenic	-151919	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
117025	chr19	18921371	18921950	+	0	NA	intron (NM_019070, intron 2 of 12)	intron (NM_019070, intron 2 of 12)	1945	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
24628	chr1	246585371	246585880	+	0	NA	intron (NM_001139459, intron 1 of 8)	AluSz|SINE|Alu	19169	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
77050	chr15	78861921	78862180	+	0	NA	Intergenic	Intergenic	-10731	NM_206839	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
202641	chr6	158762601	158763490	+	0	NA	intron (NM_001318745, intron 13 of 14)	intron (NM_001318745, intron 13 of 14)	1708	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
228642	chr9	106863801	106864130	+	0	NA	intron (NM_001347997, intron 1 of 12)	intron (NM_001347997, intron 1 of 12)	799	NM_001347997	58499		NM_021224	ENSG00000148143	ZNF462	WSKA|ZFPIP|Zfp462	zinc finger protein 462	protein-coding
70356	chr14	101874701	101874900	+	0	NA	intron (NM_178587, intron 2 of 11)	AluSx|SINE|Alu	64937	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
65873	chr14	55076901	55077500	+	0	NA	Intergenic	Intergenic	25553	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
111876	chr19	4652401	4652800	+	0	NA	3' UTR (NM_001167942, exon 2 of 2)	3' UTR (NM_001167942, exon 2 of 2)	12583	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
28953	chr10	63228121	63228800	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluJr4|SINE|Alu	40763	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
56450	chr12	113965501	113966730	+	0	NA	intron (NM_016196, intron 1 of 23)	intron (NM_016196, intron 1 of 23)	210	NM_001146698	9904		NM_016196	ENSG00000122965	RBM19	Mrd1	RNA binding motif protein 19	protein-coding
10183	chr1	61524451	61524550	+	0	NA	Intergenic	Intergenic	-129742	NR_073400	414927		NR_073400		MGC34796	-	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene	pseudo
238379	chrX	149940101	149941330	+	0	NA	non-coding (NR_027456, exon 2 of 12)	non-coding (NR_027456, exon 2 of 12)	2167	NR_027456	100272228		NR_027456	ENSG00000235703	EOLA2-DT	LINC00894	EOLA2 divergent transcript	ncRNA
223579	chr8	144273101	144273500	+	0	NA	intron (NM_015201, intron 3 of 15)	intron (NM_015201, intron 3 of 15)	6847	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
214740	chr7	151050451	151051800	+	0	NA	intron (NR_046401, intron 5 of 9)	CpG-26550	2594	NM_004769	9311		NM_004769	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid sensing ion channel subunit 3	protein-coding
108377	chr18	68847201	68847450	+	0	NA	intron (NM_001093729, intron 6 of 9)	intron (NM_001093729, intron 6 of 9)	49245	NM_024781	79839		NM_024781	ENSG00000150636	CCDC102B	ACY1L|AN|C18orf14|HsT1731	coiled-coil domain containing 102B	protein-coding
101938	chr17	74482101	74482300	+	0	NA	intron (NM_007261, intron 6 of 6)	intron (NM_007261, intron 6 of 6)	15566	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
51144	chr12	50122551	50122850	+	0	NA	Intergenic	AluJr4|SINE|Alu	10464	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
162480	chr3	48558081	48558980	+	0	NA	intron (NM_001317136, intron 1 of 13)	intron (NM_001317136, intron 1 of 13)	-1727	NM_001317134	5210		NM_004567	ENSG00000114268	PFKFB4	-	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding
200997	chr6	139545601	139545800	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-71104	NR_033919	645434		NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA
226517	chr9	71885451	71885800	+	0	NA	intron (NM_016014, intron 1 of 4)	intron (NM_016014, intron 1 of 4)	25568	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
44439	chr11	104772721	104773050	+	0	NA	Intergenic	Intergenic	125785	NR_034065	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
167308	chr3	128697201	128697780	+	0	NA	Intergenic	L1MC5|LINE|L1	-28693	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
130999	chr2	87804371	87804530	+	0	NA	intron (NM_001382344, intron 7 of 22).2	AluY|SINE|Alu	21317	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
99889	chr17	56762951	56763250	+	0	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	70820	NM_001085430	339210		NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
168693	chr3	150613771	150614280	+	0	NA	intron (NM_016275, intron 1 of 5)	intron (NM_016275, intron 1 of 5)	10704	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
38675	chr11	46414051	46414750	+	0	NA	intron (NR_160027, intron 15 of 18)	intron (NR_160027, intron 15 of 18)	-22624	NM_000741	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
21750	chr1	206883921	206884180	+	0	NA	Intergenic	AluJo|SINE|Alu	-13393	NM_001185158	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
237225	chrX	109725551	109725650	+	0	NA	intron (NM_022977, intron 1 of 16)	AluY|SINE|Alu	-6911	NR_158569	105373311		NR_158569		LOC105373311	-	uncharacterized LOC105373311	ncRNA
149147	chr21	17793171	17794160	+	0	NA	intron (NM_001100421, intron 3 of 3)	intron (NM_001100421, intron 3 of 3)	-1156	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
45583	chr11	118882451	118882850	+	0	NA	Intergenic	Intergenic	-1242	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
192591	chr6	25967721	25967980	+	0	NA	intron (NM_006355, intron 3 of 7)	intron (NM_006355, intron 3 of 7)	5048	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
139512	chr2	224559801	224560030	+	0	NA	intron (NM_003590, intron 1 of 15)	AluJb|SINE|Alu	10040	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
38714	chr11	46676171	46676700	+	0	NA	TTS (NM_001346342)	TTS (NM_001346342)	24184	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
182255	chr5	57187221	57187480	+	0	NA	intron (NM_001331037, intron 2 of 12)	intron (NM_001331037, intron 2 of 12)	11902	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
52056	chr12	54023471	54023830	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	-4790	NM_004503	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
90777	chr17	2067501	2068150	+	0	NA	intron (NM_001282326, intron 4 of 6)	intron (NM_001282326, intron 4 of 6)	11515	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
173046	chr4	5051301	5051700	+	0	NA	promoter-TSS (NM_001306082)	promoter-TSS (NM_001306082)	20	NM_018401	55351		NM_018401	ENSG00000152953	STK32B	HSA250839|STK32|STKG6|YANK2	serine/threonine kinase 32B	protein-coding
229563	chr9	123081801	123082100	+	0	NA	intron (NM_012197, intron 19 of 25)	MIRc|SINE|MIR	29693	NR_030331	693185		NR_030331	ENSG00000283941	MIR600	MIRN600|hsa-mir-600	microRNA 600	ncRNA
156525	chr22	41415651	41415750	+	0	NA	Intergenic	Intergenic	31101	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
226760	chr9	76419971	76420130	+	0	NA	Intergenic	Intergenic	21451	NR_026890	653162		NR_026890		RPSAP9	LAMR1P9|RPSA_20_986	ribosomal protein SA pseudogene 9	pseudo
230092	chr9	127558601	127559330	+	0	NA	intron (NM_001035534, intron 1 of 13)	MIRb|SINE|MIR	10108	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
39080	chr11	47991051	47992000	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	10966	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
177405	chr4	112283071	112283550	+	0	NA	intron (NM_052864, intron 1 of 1)	intron (NM_052864, intron 1 of 1)	2594	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
192417	chr6	24862021	24863430	+	0	NA	intron (NM_001286447, intron 7 of 13)	intron (NM_001286447, intron 7 of 13)	14545	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
117453	chr19	19684501	19684700	+	0	NA	Intergenic	MSTB-int|LTR|ERVL-MaLR	15761	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
230149	chr9	127748701	127748900	+	0	NA	intron (NM_170600, intron 5 of 11)	intron (NM_170600, intron 5 of 11)	6482	NM_001142534	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
171393	chr3	196184551	196184650	+	0	NA	Intergenic	AluJb|SINE|Alu	26800	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
100147	chr17	58528121	58528580	+	0	NA	promoter-TSS (NM_001256822)	promoter-TSS (NM_001256822)	-303	NM_001256822	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
210478	chr7	100156401	100157250	+	0	NA	promoter-TSS (NR_039802)	promoter-TSS (NR_039802)	-156	NR_039802	100616439		NR_039802	ENSG00000284518	MIR4658	-	microRNA 4658	ncRNA
195819	chr6	41202851	41202950	+	0	NA	Intergenic	Intergenic	-1751	NM_024807	79865		NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
71504	chr14	106025021	106025650	+	0	NA	Intergenic	Intergenic	-53066	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
10728	chr1	76023751	76024600	+	0	NA	Intergenic	Intergenic	12851	NR_125939	101927342		NR_125939		LOC101927342	-	uncharacterized LOC101927342	ncRNA
168794	chr3	152191951	152192530	+	0	NA	intron (NR_136178, intron 1 of 2)	intron (NR_136178, intron 1 of 2)	13189	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
11026	chr1	84892371	84893380	+	0	NA	intron (NM_012152, intron 1 of 2)	CpG	331	NM_012152	23566		NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
226491	chr9	71763601	71764030	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	4698	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
215532	chr7	158774701	158774900	+	0	NA	intron (NM_020728, intron 6 of 21)	intron (NM_020728, intron 6 of 21)	54709	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
103406	chr17	78183371	78183530	+	0	NA	intron (NM_001363848, intron 3 of 5)	AluJr|SINE|Alu	3602	NM_001346663	7083		NM_003258	ENSG00000167900	TK1	TK2	thymidine kinase 1	protein-coding
18661	chr1	167074771	167075130	+	0	NA	intron (NM_005814, intron 1 of 6)	AluSx|SINE|Alu	15427	NM_005814	10223		NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding
156847	chr22	41974551	41975680	+	0	NA	intron (NM_001363845, intron 2 of 11)	intron (NM_001363845, intron 2 of 11)	-1663	NM_145733	55964		NM_019106	ENSG00000100167	SEPTIN3	SEP3|SEPT3|bK250D10.3	septin 3	protein-coding
89643	chr16	89337071	89337630	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	16898	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
205750	chr7	23508371	23509000	+	0	NA	intron (NM_001362759, intron 3 of 6)	AluSc|SINE|Alu	18297	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
171142	chr3	195553701	195553900	+	0	NA	Intergenic	AluSx|SINE|Alu	-10475	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
1010	chr1	1855021	1855280	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSg4|SINE|Alu	35937	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
67084	chr14	68212071	68212430	+	0	NA	intron (NM_133509, intron 7 of 10)	MIR|SINE|MIR	388658	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
85812	chr16	56980871	56981800	+	0	NA	intron (NM_000078, intron 12 of 15)	intron (NM_000078, intron 12 of 15)	-8222	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
129637	chr2	70139271	70139980	+	0	NA	Intergenic	AluJr4|SINE|Alu	-14309	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
131279	chr2	96095951	96096050	+	0	NA	Intergenic	AluJb|SINE|Alu	20571	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
201277	chr6	144283851	144284230	+	0	NA	Intergenic	Intergenic	-7697	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
160672	chr3	32138521	32138850	+	0	NA	exon (NM_015141, exon 3 of 8)	exon (NM_015141, exon 3 of 8)	32065	NM_015141	23171		NM_015141	ENSG00000152642	GPD1L	GPD1-L	glycerol-3-phosphate dehydrogenase 1 like	protein-coding
78412	chr15	92082001	92082580	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	227986	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
127439	chr2	42173521	42174380	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-3719	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
4550	chr1	22037201	22037400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11252	NR_110692	101928043		NR_110692	ENSG00000228397	LINC01635	-	long intergenic non-protein coding RNA 1635	ncRNA
232145	chr9	134041701	134041900	+	0	NA	exon (NM_007371, exon 8 of 12)	exon (NM_007371, exon 8 of 12)	-12490	NR_135126	100130548		NR_135126	ENSG00000235138	LOC100130548	-	uncharacterized LOC100130548	ncRNA
13579	chr1	116151901	116152780	+	0	NA	Intergenic	CpG	40585	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
186725	chr5	139272501	139273080	+	0	NA	promoter-TSS (NM_001282278)	promoter-TSS (NM_001282278)	-962	NM_001282278	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
83524	chr16	27462151	27462530	+	0	NA	exon (NM_001286242, exon 36 of 37)	exon (NM_001286242, exon 36 of 37)	-8947	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
87726	chr16	75107551	75108150	+	0	NA	3' UTR (NM_032268, exon 5 of 5)	3' UTR (NM_032268, exon 5 of 5)	8922	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
209328	chr7	76177801	76179030	+	0	NA	Intergenic	Intergenic	-23481	NM_001291831	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
171099	chr3	195501471	195501900	+	0	NA	Intergenic	Intergenic	41640	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
66474	chr14	61568151	61569080	+	0	NA	intron (NR_110417, intron 1 of 3)	intron (NR_110417, intron 1 of 3)	1579	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
98321	chr17	46257251	46257350	+	0	NA	Intergenic	AluSx|SINE|Alu	-31933	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
236632	chrX	74606801	74607480	+	0	NA	intron (NM_016120, intron 1 of 3)	AluSz|SINE|Alu	7484	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
38222	chr11	36417171	36417730	+	0	NA	intron (NM_001160167, intron 3 of 8)	intron (NM_001160167, intron 3 of 8)	16453	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
101074	chr17	64897171	64897330	+	0	NA	exon (NM_199340, exon 4 of 15)	exon (NM_199340, exon 4 of 15)	22241	NM_199340	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
190718	chr6	289521	289780	+	0	NA	Intergenic	Intergenic	-2407	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
227108	chr9	85803121	85803900	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-2492	NR_029410	389765		NR_029410		LOC389765	-	kinesin family member 27 pseudogene	pseudo
130124	chr2	74573821	74574150	+	0	NA	intron (NM_001321739, intron 7 of 10)	intron (NM_001321739, intron 7 of 10)	19825	NM_001381	1796		NM_001381	ENSG00000115325	DOK1	P62DOK|pp62	docking protein 1	protein-coding
35655	chr11	1858771	1859230	+	0	NA	TTS (NR_036185)	TTS (NR_036185)	536	NR_036185	100423021		NR_036185	ENSG00000264493	MIR4298	-	microRNA 4298	ncRNA
238073	chrX	136143651	136144050	+	0	NA	Intergenic	Intergenic	-2852	NR_027621	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
167971	chr3	136695321	136695580	+	0	NA	intron (NM_005862, intron 1 of 33)	AluSx3|SINE|Alu	56928	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
108520	chr18	74341151	74341250	+	0	NA	intron (NM_001174123, intron 8 of 13)	AluYa5|SINE|Alu	25361	NM_001174123	644041		NM_001174123	ENSG00000206043	C18orf63	DKFZP781G0119	chromosome 18 open reading frame 63	protein-coding
70198	chr14	100547861	100549180	+	0	NA	promoter-TSS (NM_001385103)	promoter-TSS (NM_001385103)	-393	NM_001385104	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
218021	chr8	38714321	38714600	+	0	NA	Intergenic	Intergenic	-14122	NM_001352792	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
43221	chr11	75437551	75437850	+	0	NA	intron (NM_030792, intron 15 of 16)	intron (NM_030792, intron 15 of 16)	-7071	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
132995	chr2	111532521	111533300	+	0	NA	Intergenic	Intergenic	-37749	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
212777	chr7	130055351	130055650	+	0	NA	Intergenic	AluSx|SINE|Alu	-4049	NM_001282191	51530		NM_016478	ENSG00000091732	ZC3HC1	HSPC216|NIPA	zinc finger C3HC-type containing 1	protein-coding
107045	chr18	32134451	32135100	+	0	NA	Intergenic	AluJb|SINE|Alu	42169	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
25973	chr10	11725271	11725500	+	0	NA	Intergenic	Intergenic	-16997	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
20731	chr1	200895521	200895780	+	0	NA	intron (NM_001367290, intron 1 of 9)	intron (NM_001367290, intron 1 of 9)	750	NM_001367290	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
68853	chr14	91298151	91298750	+	0	NA	intron (NM_001080414, intron 21 of 29)	FRAM|SINE|Alu	-44570	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
23344	chr1	228138101	228138550	+	0	NA	Intergenic	AluYh3|SINE|Alu	-1759	NM_001242839	2987		NM_000858	ENSG00000143774	GUK1	GMK	guanylate kinase 1	protein-coding
180259	chr5	1698851	1699150	+	0	NA	Intergenic	Charlie3|DNA|hAT-Charlie	9868	NR_036240	100422966		NR_036240	ENSG00000263746	MIR4277	-	microRNA 4277	ncRNA
97508	chr17	43926921	43927480	+	0	NA	Intergenic	Intergenic	9992	NR_026770	23591		NM_014318	ENSG00000267496	FAM215A	APR-2|C17orf88|LINC00530	family with sequence similarity 215 member A	ncRNA
70405	chr14	101972751	101973250	+	0	NA	intron (NM_001376, intron 1 of 77)	intron (NM_001376, intron 1 of 77)	8427	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
70891	chr14	103880401	103881230	+	0	NA	Intergenic	Intergenic	33094	NR_038436	145216		NR_038436	ENSG00000258735	PPP1R13B-DT	HITT|LINC00637	PPP1R13B divergent transcript	ncRNA
36249	chr11	3759251	3759550	+	0	NA	intron (NM_001365128, intron 10 of 32)	AluSz|SINE|Alu	38146	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
48963	chr12	12899601	12899800	+	0	NA	intron (NM_003979, intron 1 of 3)	MIRb|SINE|MIR	8138	NM_003979	9052		NM_003979	ENSG00000013588	GPRC5A	GPCR5A|PEIG-1|RAI3|RAIG1|TIG1	G protein-coupled receptor class C group 5 member A	protein-coding
183731	chr5	81108401	81108750	+	0	NA	intron (NM_006909, intron 12 of 26)	intron (NM_006909, intron 12 of 26)	-124745	NM_001099736	1160		NM_001825	ENSG00000131730	CKMT2	SMTCK	creatine kinase, mitochondrial 2	protein-coding
157255	chr22	43496671	43496950	+	0	NA	intron (NM_001362786, intron 4 of 6)	intron (NM_001362786, intron 4 of 6)	-19444	NR_046563	100874197		NR_046563		EFCAB6-AS1	-	EFCAB6 antisense RNA 1	ncRNA
166136	chr3	111541651	111542390	+	0	NA	promoter-TSS (NM_001318889)	promoter-TSS (NM_001318889)	-177	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
35214	chr11	817471	817930	+	0	NA	Intergenic	L2c|LINE|L2	-1214	NM_020376	57104		NM_020376	ENSG00000177666	PNPLA2	1110001C14Rik|ATGL|FP17548|PEDF-R|TTS-2.2|TTS2|iPLA2zeta	patatin like phospholipase domain containing 2	protein-coding
14511	chr1	144634451	144634750	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	-6769	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
121188	chr19	46515751	46516250	+	0	NA	intron (NM_001205281, intron 3 of 3)	intron (NM_001205281, intron 3 of 3)	-20133	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
206854	chr7	37432471	37433130	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	16152	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
73945	chr15	51727351	51728000	+	0	NA	intron (NM_001143917, intron 1 of 2)	intron (NM_001143917, intron 1 of 2)	9387	NM_001363969	256586		NM_153374	ENSG00000140280	LYSMD2	-	LysM domain containing 2	protein-coding
10830	chr1	77947501	77947700	+	0	NA	TTS (NM_001303433)	TTS (NM_001303433)	31472	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
41795	chr11	66861651	66861950	+	0	NA	intron (NM_022172, intron 10 of 20)	intron (NM_022172, intron 10 of 20)	4736	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
1989	chr1	6629221	6629480	+	0	NA	intron (NM_001195752, intron 2 of 4)	intron (NM_001195752, intron 2 of 4)	4200	NM_001195752	90326		NM_138350	ENSG00000041988	THAP3	-	THAP domain containing 3	protein-coding
8728	chr1	42681121	42682700	+	0	NA	promoter-TSS (NM_004559)	promoter-TSS (NM_004559)	-508	NM_004559	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
59541	chr13	27262451	27262830	+	0	NA	Intergenic	Intergenic	7239	NR_002575	619499		NR_002575	ENSG00000207051	SNORA27	ACA27	small nucleolar RNA, H/ACA box 27	snoRNA
179063	chr4	165540851	165540950	+	0	NA	Intergenic	MIRb|SINE|MIR	-143739	NR_121676	101928151		NR_121676	ENSG00000249500	LINC01179	-	long intergenic non-protein coding RNA 1179	ncRNA
230176	chr9	127785701	127787300	+	0	NA	TTS (NR_036055)	TTS (NR_036055)	466	NM_001261	1025		NM_001261	ENSG00000136807	CDK9	C-2k|CDC2L4|CTK1|PITALRE|TAK	cyclin dependent kinase 9	protein-coding
184251	chr5	96699651	96699950	+	0	NA	intron (NM_001375317, intron 3 of 30)	MLT1N2|LTR|ERVL-MaLR	-2860	NM_001042446	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
194595	chr6	33451951	33452050	+	0	NA	3' UTR (NM_001130066, exon 18 of 18)	3' UTR (NM_001130066, exon 18 of 18)	-2576	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
130670	chr2	86337251	86338130	+	0	NA	promoter-TSS (NM_022912)	promoter-TSS (NM_022912)	-64	NM_001371280	65055		NM_022912	ENSG00000068615	REEP1	C2orf23|DSMA6|HMN5B|HMND12|HMNR6|SPG31|Yip2a	receptor accessory protein 1	protein-coding
201026	chr6	141513971	141514330	+	0	NA	Intergenic	L1M4a1|LINE|L1	-619009	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
75424	chr15	65784051	65784800	+	0	NA	intron (NM_001376919, intron 1 of 31)	L1MC3|LINE|L1	7868	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
18879	chr1	168138271	168138430	+	0	NA	promoter-TSS (NM_001267614)	promoter-TSS (NM_001267614)	-683	NM_001349633	23432		NM_007369	ENSG00000143147	GPR161	RE2	G protein-coupled receptor 161	protein-coding
88824	chr16	87435571	87435930	+	0	NA	intron (NM_015144, intron 2 of 12)	intron (NM_015144, intron 2 of 12)	43414	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
128118	chr2	48315301	48316280	+	0	NA	5' UTR (NM_001375452, exon 1 of 6)	5' UTR (NM_001375452, exon 1 of 6)	1108	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
204645	chr7	5418771	5419380	+	0	NA	intron (NM_001080495, intron 2 of 29)	intron (NM_001080495, intron 2 of 29)	4471	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
41760	chr11	66693121	66693550	+	0	NA	exon (NM_006946, exon 24 of 38)	exon (NM_006946, exon 24 of 38)	-15448	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
11396	chr1	89675321	89675580	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	42330	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
175352	chr4	69689671	69689930	+	0	NA	Intergenic	MIRc|SINE|MIR	-36553	NM_001252274	10941		NM_006798	ENSG00000173610	UGT2A1	UDPGT2A1	UDP glucuronosyltransferase family 2 member A1 complex locus	protein-coding
103094	chr17	77334971	77335130	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	15535	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
113868	chr19	10661251	10662600	+	0	NA	intron (NM_153464, intron 1 of 17)	intron (NM_153464, intron 1 of 17)	7579	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
217577	chr8	29491651	29491950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-141116	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
199806	chr6	127342901	127344550	+	0	NA	promoter-TSS (NM_001002030)	promoter-TSS (NM_001002030)	-116	NM_001105544	55862		NM_018479	ENSG00000093144	ECHDC1	HEL-S-76|MMCD|dJ351K20.2	ethylmalonyl-CoA decarboxylase 1	protein-coding
161218	chr3	39179401	39179600	+	0	NA	Intergenic	L2a|LINE|L2	13095	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
173079	chr4	6199201	6200000	+	0	NA	intron (NM_144720, intron 1 of 12)	CpG	949	NM_001099433	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
5270	chr1	25059571	25059730	+	0	NA	Intergenic	L1PA3|LINE|L1	36147	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
198974	chr6	110892701	110892900	+	0	NA	exon (NM_001287214, exon 6 of 8)	exon (NM_001287214, exon 6 of 8)	18016	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
64416	chr14	24180371	24180830	+	0	NA	TTS (NM_005132)	TTS (NM_005132)	8216	NM_024658	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
181650	chr5	50383201	50383480	+	0	NA	Intergenic	L1MB1|LINE|L1	57948	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
176017	chr4	82294571	82294730	+	0	NA	Intergenic	AluSx3|SINE|Alu	79341	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
79808	chr16	1407571	1409030	+	0	NA	intron (NM_001372107, intron 2 of 14)	CpG	6404	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
133299	chr2	113624471	113624780	+	0	NA	intron (NR_024530, intron 2 of 3)	(ACCCTA)n|Simple_repeat|Simple_repeat	2513	NR_024531	118433		NR_000029		RPL23AP7	RPL23AL1|RPL23A_6_267|bA395L14.9	ribosomal protein L23a pseudogene 7	pseudo
203297	chr6	169988671	169989030	+	0	NA	Intergenic	Intergenic	26227	NR_027434	100131532		NR_027434		LOC100131532	-	uncharacterized LOC100131532	ncRNA
65001	chr14	38129401	38130030	+	0	NA	Intergenic	LTR1E|LTR|ERV1	-78189	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
61009	chr13	48078221	48078550	+	0	NA	intron (NR_046511, intron 2 of 2)	LTR41C|LTR|ERVL	1248	NR_046511	100873965		NR_046511	ENSG00000229111	MED4-AS1	MED4-AS	MED4 antisense RNA 1	ncRNA
66732	chr14	64496751	64497250	+	0	NA	intron (NM_001354685, intron 2 of 4)	MIRc|SINE|MIR	992	NM_001354687	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
78635	chr15	94252021	94252680	+	0	NA	intron (NR_169532, intron 1 of 23)	L1MB3|LINE|L1	20789	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
156341	chr22	40745101	40745330	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	65731	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
236555	chrX	72262271	72262630	+	0	NA	intron (NM_001170747, intron 3 of 3)	intron (NM_001170747, intron 3 of 3)	14798	NM_001007	6191		NM_001007	ENSG00000198034	RPS4X	CCG2|DXS306|RPS4|S4|SCAR|SCR10|eS4	ribosomal protein S4 X-linked	protein-coding
63553	chr14	20340301	20340630	+	0	NA	Intergenic	AluSx1|SINE|Alu	2946	NR_002312	85495		NR_002312	ENSG00000277209	RPPH1	H1RNA|RPPH1-1	ribonuclease P RNA component H1	ncRNA
146340	chr20	49240401	49240800	+	0	NA	intron (NM_017895, intron 16 of 20)	AluY|SINE|Alu	21184	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
165203	chr3	72761421	72761680	+	0	NA	intron (NM_018130, intron 10 of 10)	intron (NM_018130, intron 10 of 10)	86895	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
86355	chr16	66523201	66523400	+	0	NA	intron (NR_073520, intron 5 of 8)	intron (NR_073520, intron 5 of 8)	26822	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
238346	chrX	149549901	149550100	+	0	NA	promoter-TSS (NM_001323079)	promoter-TSS (NM_001323079)	-76	NM_001323079	101928917		NM_001323079	ENSG00000283697	HSFX3	-	heat shock transcription factor family, X-linked member 3	protein-coding
223546	chr8	144150601	144151050	+	0	NA	intron (NM_001288814, intron 1 of 41)	LTR1A2|LTR|ERV1	2180	NM_001288814	727957		NM_032450	ENSG00000179832	MROH1	HEATR7A	maestro heat like repeat family member 1	protein-coding
181900	chr5	54608951	54609250	+	0	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	91341	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
146875	chr20	51497371	51498880	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	44594	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
168288	chr3	141500151	141500900	+	0	NA	intron (NM_006506, intron 1 of 23)	MIR|SINE|MIR	13498	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
74164	chr15	55288301	55288580	+	0	NA	intron (NM_183235, intron 1 of 6)	AluSz6|SINE|Alu	1373	NM_183235	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
111849	chr19	4582501	4582700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-22916	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
79101	chr16	189521	189900	+	0	NA	3' UTR (NM_018032, exon 9 of 9)	3' UTR (NM_018032, exon 9 of 9)	9251	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
81587	chr16	10319251	10320300	+	0	NA	Intergenic	AluSz6|SINE|Alu	-66286	NM_024997	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
234141	chrX	10078301	10078500	+	0	NA	intron (NM_015691, intron 3 of 22)	intron (NM_015691, intron 3 of 22)	63146	NM_015691	55841		NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
52821	chr12	57008001	57008650	+	0	NA	Intergenic	Intergenic	-1779	NM_014830	9880		NM_014830	ENSG00000166860	ZBTB39	ZNF922	zinc finger and BTB domain containing 39	protein-coding
169510	chr3	170002921	170003280	+	0	NA	Intergenic	Intergenic	-34895	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
215905	chr8	8148751	8149230	+	0	NA	intron (NR_147089, intron 2 of 3)	MLT1O|LTR|ERVL-MaLR	-59901	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
35722	chr11	1968301	1968500	+	0	NA	Intergenic	Intergenic	19069	NR_132974	106635549		NR_132974		SNORD131	-	small nucleolar RNA, C/D box 131	snoRNA
113437	chr19	9815271	9815700	+	0	NA	intron (NM_001316942, intron 2 of 3)	THE1A-int|LTR|ERVL-MaLR	3594	NM_001316938	54850		NM_017703	ENSG00000127452	FBXL12	Fbl12	F-box and leucine rich repeat protein 12	protein-coding
166713	chr3	120907921	120908680	+	0	NA	promoter-TSS (NM_001348343)	promoter-TSS (NM_001348343)	95	NR_145517	9515		NM_014980	ENSG00000145087	STXBP5L	LLGL4	syntaxin binding protein 5L	protein-coding
205882	chr7	25106351	25106650	+	0	NA	Intergenic	AluSq2|SINE|Alu	18760	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
198038	chr6	90175621	90176680	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	120693	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
87203	chr16	69438271	69438930	+	0	NA	intron (NM_030579, intron 1 of 4)	L1MB4|LINE|L1	13981	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
173373	chr4	7902221	7902680	+	0	NA	intron (NM_001371091, intron 1 of 17)	intron (NM_001371091, intron 1 of 17)	-30142	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
183609	chr5	80212351	80212980	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	43383	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
86406	chr16	66749001	66749400	+	0	NA	non-coding (NR_136658, exon 3 of 14)	non-coding (NR_136658, exon 3 of 14)	2409	NM_006141	1783		NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding
82000	chr16	11907571	11907730	+	0	NA	intron (NM_001130007, intron 1 of 14)	MIR3|SINE|MIR	8306	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
76992	chr15	78300671	78301880	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1666	NM_001303247	80349		NM_025234	ENSG00000140395	SKIC8	REC14|SKI8|WDR61	SKI8 subunit of superkiller complex	protein-coding
61663	chr13	73947821	73948430	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	185804	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
215655	chr8	419051	419350	+	0	NA	intron (NM_183420, intron 2 of 9)	AluSq2|SINE|Alu	12242	NM_183420	26260		NM_012173	ENSG00000147364	FBXO25	FBX25	F-box protein 25	protein-coding
52128	chr12	54205151	54205830	+	0	NA	Intergenic	Intergenic	-16496	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
76823	chr15	77162951	77163250	+	0	NA	intron (NM_024776, intron 5 of 7)	intron (NM_024776, intron 5 of 7)	62304	NR_026813	81698		NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	ncRNA
132482	chr2	105929121	105930000	+	0	NA	Intergenic	Intergenic	77713	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
176384	chr4	88614771	88614930	+	0	NA	intron (NM_001375479, intron 4 of 25)	intron (NM_001375479, intron 4 of 25)	22370	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
203122	chr6	166729171	166729330	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	-101999	NM_021135	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
37816	chr11	33037371	33037730	+	0	NA	Intergenic	Intergenic	-2022	NM_018393	55346		NM_018393	ENSG00000176148	TCP11L1	dJ85M6.3	t-complex 11 like 1	protein-coding
77589	chr15	85233871	85234330	+	0	NA	intron (NR_158179, intron 1 of 7)	CpG	681	NR_158179	101929479		NR_158179		LOC101929479	-	golgin A2 pseudogene	pseudo
34340	chr10	132187951	132188050	+	0	NA	intron (NM_006426, intron 1 of 13)	intron (NM_006426, intron 1 of 13)	1052	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
183959	chr5	88665701	88666180	+	0	NA	TTS (NR_030741)	TTS (NR_030741)	999	NR_030741	407047		NR_030741	ENSG00000284447	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2	microRNA 9-2	ncRNA
20120	chr1	192521571	192522630	+	0	NA	Intergenic	Intergenic	-53673	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
216056	chr8	10053171	10056050	+	0	NA	exon (NM_001135670, exon 1 of 5).2	exon (NM_001135670, exon 1 of 5).2	318	NM_012331	4482		NM_012331	ENSG00000175806	MSRA	PMSR	methionine sulfoxide reductase A	protein-coding
56818	chr12	120219801	120220400	+	0	NA	intron (NM_001080855, intron 6 of 11)	GA-rich|Low_complexity|Low_complexity	18809	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
122872	chr19	50500021	50500730	+	0	NA	Intergenic	Intergenic	10816	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
52783	chr12	56693901	56694300	+	0	NA	Intergenic	AluSg4|SINE|Alu	-5692	NM_001282604	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
108871	chr18	79387721	79388330	+	0	NA	Intergenic	L1M4b|LINE|L1	-7905	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
72113	chr15	28945551	28945930	+	0	NA	intron (NM_001353793, intron 1 of 12).2	AluSx1|SINE|Alu	11736	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
94545	chr17	29586771	29587430	+	0	NA	intron (NM_001085454, intron 1 of 20)	intron (NM_001085454, intron 1 of 20)	2548	NM_014030	28964		NM_014030	ENSG00000108262	GIT1	p95-APP1	GIT ArfGAP 1	protein-coding
179369	chr4	183442871	183443130	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1636	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
199587	chr6	119097871	119098030	+	0	NA	intron (NM_001288576, intron 1 of 15)	LTR39|LTR|ERV1	-19286	NM_024581	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
15859	chr1	151437001	151437930	+	0	NA	intron (NM_207171, intron 1 of 16)	intron (NM_207171, intron 1 of 16)	4740	NM_207171	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
159175	chr3	12817171	12817680	+	0	NA	exon (NM_001162499, exon 10 of 15)	exon (NM_001162499, exon 10 of 15)	20745	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
11851	chr1	92974721	92974980	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-13328	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
4142	chr1	19339771	19340230	+	0	NA	intron (NM_001206541, intron 8 of 8)	intron (NM_001206541, intron 8 of 8)	27674	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
197460	chr6	75242301	75242680	+	0	NA	intron (NM_001865, intron 2 of 4)	AluSq2|SINE|Alu	1311	NM_001366293	1347		NM_001865	ENSG00000112695	COX7A2	COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL	cytochrome c oxidase subunit 7A2	protein-coding
166614	chr3	119353151	119353600	+	0	NA	intron (NM_020754, intron 1 of 11)	intron (NM_020754, intron 1 of 11)	-30615	NR_046748	100874246		NR_046748	ENSG00000241155	ARHGAP31-AS1	-	ARHGAP31 antisense RNA 1	ncRNA
186892	chr5	139567401	139567880	+	0	NA	intron (NM_181838, intron 2 of 7)	AluSz|SINE|Alu	6301	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
211824	chr7	108284451	108284750	+	0	NA	intron (NM_001371171, intron 3 of 28)	L2c|LINE|L2	-41215	NM_001371182	4897		NM_005010	ENSG00000091129	NRCAM	NEDNMS	neuronal cell adhesion molecule	protein-coding
143530	chr20	31566571	31567350	+	0	NA	TTS (NR_046853)	TTS (NR_046853)	6303	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
169767	chr3	172594971	172595200	+	0	NA	intron (NR_146714, intron 1 of 3)	AluSq2|SINE|Alu	522	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
131246	chr2	95996071	95996700	+	0	NA	Intergenic	Intergenic	-4561	NM_001310154	400986		NM_001010914	ENSG00000174501	ANKRD36C	-	ankyrin repeat domain 36C	protein-coding
226336	chr9	69265221	69265300	+	0	NA	Intergenic	(CCTAAC)n|Simple_repeat|Simple_repeat	41796	NR_047671	100885775		NR_047671	ENSG00000278910	BANCR	LINC00586	BRAF-activated non-protein coding RNA	ncRNA
225864	chr9	38392471	38393430	+	0	NA	intron (NM_000692, intron 1 of 1)	CpG	248	NM_000692	219		NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
11158	chr1	86917071	86917430	+	0	NA	intron (NM_001134492, intron 1 of 4)	AluSx1|SINE|Alu	2615	NM_012262	9653		NM_012262	ENSG00000153936	HS2ST1	NFSRA|dJ604K5.2	heparan sulfate 2-O-sulfotransferase 1	protein-coding
3264	chr1	15080421	15080880	+	0	NA	intron (NM_201628, intron 8 of 14)	intron (NM_201628, intron 8 of 14)	71814	NR_027136	200197		NM_182534	ENSG00000175147	TMEM51-AS1	C1orf126	TMEM51 antisense RNA 1	ncRNA
221599	chr8	125511651	125511950	+	0	NA	Intergenic	Intergenic	79591	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
197791	chr6	87682101	87682850	+	0	NA	intron (NM_018064, intron 1 of 4)	intron (NM_018064, intron 1 of 4)	19758	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
153531	chr22	26570171	26570730	+	0	NA	intron (NM_001362923, intron 1 of 7)	intron (NM_001362923, intron 1 of 7)	-5109	NM_001008566	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
76781	chr15	77008971	77009780	+	0	NA	intron (NM_001321136, intron 2 of 15)	intron (NM_001321136, intron 2 of 15)	14249	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
90257	chr17	879601	879950	+	0	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	-15664	NM_001205319	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
56111	chr12	110739821	110740580	+	0	NA	intron (NM_002710, intron 1 of 6)	intron (NM_002710, intron 1 of 6)	2691	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
176230	chr4	86075851	86075950	+	0	NA	intron (NM_001351625, intron 9 of 13)	L1PA2|LINE|L1	-43906	NR_110879	101929064		NR_110879	ENSG00000250062	MAPK10-AS1	-	MAPK10 antisense RNA 1	ncRNA
134991	chr2	152697351	152697800	+	0	NA	intron (NM_001365600, intron 2 of 25)	intron (NM_001365600, intron 2 of 25)	19886	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
98091	chr17	45590621	45591130	+	0	NA	Intergenic	AluSp|SINE|Alu	10987	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
153816	chr22	29723371	29723930	+	0	NA	intron (NM_182527, intron 1 of 4)	intron (NM_182527, intron 1 of 4)	3647	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
21270	chr1	204398171	204400530	+	0	NA	Intergenic	AluJb|SINE|Alu	12467	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
113896	chr19	10682351	10684730	+	0	NA	exon (NM_017620, exon 15 of 20)	exon (NM_017620, exon 15 of 20)	-17899	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
217320	chr8	27413001	27414130	+	0	NA	intron (NM_173174, intron 7 of 35)	L1MC4|LINE|L1	-19805	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
191993	chr6	16238101	16239430	+	0	NA	exon (NM_006877, exon 1 of 9)	exon (NM_006877, exon 1 of 9)	178	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
229914	chr9	126616221	126616630	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	2497	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
173097	chr4	6324971	6325530	+	0	NA	intron (NM_001206995, intron 9 of 9)	intron (NM_001206995, intron 9 of 9)	55400	NM_006005	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
72326	chr15	31263821	31264880	+	0	NA	Intergenic	Intergenic	-33488	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
136219	chr2	174585071	174585230	+	0	NA	intron (NM_001375837, intron 2 of 4)	intron (NM_001375837, intron 2 of 4)	12654	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
85241	chr16	48318101	48319100	+	0	NA	intron (NM_031490, intron 11 of 14)	intron (NM_031490, intron 11 of 14)	47287	NM_001006610	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
35526	chr11	1565221	1565950	+	0	NA	intron (NM_004420, intron 2 of 6)	intron (NM_004420, intron 2 of 6)	6686	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
26428	chr10	17234271	17234780	+	0	NA	intron (NM_003380, intron 5 of 9)	intron (NM_003380, intron 5 of 9)	-4540	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
81249	chr16	4609171	4609900	+	0	NA	3' UTR (NM_145253, exon 3 of 3)	3' UTR (NM_145253, exon 3 of 3)	5353	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
210822	chr7	100887101	100888500	+	0	NA	TTS (NM_001015072)	TTS (NM_001015072)	1915	NM_001015072	402682		NM_001015072	ENSG00000176125	UFSP1	UFSP	UFM1 specific peptidase 1 (inactive)	protein-coding
206217	chr7	28581421	28581680	+	0	NA	intron (NM_182899, intron 4 of 9)	intron (NM_182899, intron 4 of 9)	-104583	NM_001011666	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
24745	chr1	248686901	248687200	+	0	NA	Intergenic	Intergenic	-4746	NM_001004734	401994		NM_001004734	ENSG00000189181	OR14I1	OR5BU1|OR5BU1P	olfactory receptor family 14 subfamily I member 1	protein-coding
133277	chr2	113509321	113510300	+	0	NA	Intergenic	SATR1|Satellite|Satellite	10726	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
113341	chr19	8622801	8623100	+	0	NA	Intergenic	AluSg4|SINE|Alu	-7683	NM_001378600	105372267		NM_001378599	ENSG00000268480	NFILZ	LINC01862	NFIL3 like basic leucine zipper	protein-coding
203279	chr6	169774401	169774650	+	0	NA	intron (NM_018341, intron 13 of 17)	intron (NM_018341, intron 13 of 17)	-15548	NR_026780	80069		NM_025002	ENSG00000231690	LINC00574	C6orf208|CRALA|dJ182D15.1	long intergenic non-protein coding RNA 574	ncRNA
149196	chr21	23955171	23955330	+	0	NA	Intergenic	L2|LINE|L2	366127	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
38503	chr11	45881671	45881930	+	0	NA	3' UTR (NM_001127457, exon 12 of 12)	3' UTR (NM_001127457, exon 12 of 12)	-3851	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
219611	chr8	80087021	80087500	+	0	NA	intron (NM_001287144, intron 1 of 5)	L1PA11|LINE|L1	-6429	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
2330	chr1	9196451	9197050	+	0	NA	Intergenic	Intergenic	-14412	NR_132742	106614088		NR_132742	ENSG00000228526	MIR34AHG	lnc34a	MIR34A host gene	ncRNA
200946	chr6	139171051	139171800	+	0	NA	intron (NM_016217, intron 2 of 3)	intron (NM_016217, intron 2 of 3)	36345	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
231406	chr9	130998301	130998700	+	0	NA	Intergenic	Intergenic	-10674	NM_006059	10319		NM_006059	ENSG00000050555	LAMC3	OCCM	laminin subunit gamma 3	protein-coding
51728	chr12	53219021	53219700	+	0	NA	intron (NM_001243730, intron 2 of 8)	intron (NM_001243730, intron 2 of 8)	1002	NM_001042728	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
80466	chr16	2693821	2694250	+	0	NA	intron (NM_018992, intron 1 of 5)	intron (NM_018992, intron 1 of 5)	11512	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
198292	chr6	100116671	100116900	+	0	NA	Intergenic	Intergenic	-122547	NM_032503	84539		NM_032503	ENSG00000152034	MCHR2	GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT	melanin concentrating hormone receptor 2	protein-coding
18167	chr1	160797101	160797390	+	0	NA	intron (NM_001033667, intron 1 of 2)	intron (NM_001033667, intron 1 of 2)	1071	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
50026	chr12	43701371	43701550	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	57330	NM_001098614	83448		NM_031292	ENSG00000129317	PUS7L	-	pseudouridine synthase 7 like	protein-coding
171226	chr3	195775551	195776050	+	0	NA	intron (NM_138297, intron 1 of 22)	intron (NM_138297, intron 1 of 22)	36129	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
45052	chr11	117049421	117049750	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSz|SINE|Alu	48843	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
227824	chr9	93357751	93357930	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-11537	NR_166069	445577		NM_001098808		FAM120A2P	C9orf129|bA165J3.3	family with sequence similarity 120A2, pseudogene	pseudo
769	chr1	1518201	1518950	+	0	NA	intron (NM_018188, intron 4 of 15)	(AC)n|Simple_repeat|Simple_repeat	6045	NM_001170536	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
195420	chr6	36890251	36890550	+	0	NA	intron (NM_152734, intron 1 of 7)	L1MA10|LINE|L1	4448	NM_152734	221477		NM_152734	ENSG00000198663	C6orf89	BRAP|PS1TP5TP1	chromosome 6 open reading frame 89	protein-coding
209263	chr7	75896471	75896830	+	0	NA	Intergenic	Intergenic	17616	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
13090	chr1	111597471	111597830	+	0	NA	intron (NM_001370216, intron 1 of 7)	intron (NM_001370216, intron 1 of 7)	10668	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
130808	chr2	86974301	86974500	+	0	NA	exon (NM_001024457, exon 11 of 23)	exon (NM_001024457, exon 11 of 23)	32282	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
154189	chr22	31342601	31343200	+	0	NA	exon (NM_032051, exon 2 of 3)	exon (NM_032051, exon 2 of 3)	3446	NM_032052	23598		NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ/BTB and AT hook containing zinc finger 1	protein-coding
236083	chrX	56771821	56772080	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-34366	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
200690	chr6	137261521	137262050	+	0	NA	Intergenic	Intergenic	-42400	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
51183	chr12	50247051	50247500	+	0	NA	intron (NM_001113546, intron 2 of 10)	MLT1G1|LTR|ERVL-MaLR	-13063	NR_031625	100302220		NR_031625	ENSG00000221604	MIR1293	MIRN1293|hsa-mir-1293|mir-1293	microRNA 1293	ncRNA
22411	chr1	220042121	220042400	+	0	NA	intron (NM_004446, intron 1 of 31)	AluSq|SINE|Alu	4245	NM_004446	2058		NM_004446	ENSG00000136628	EPRS1	EARS|EPRS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS	glutamyl-prolyl-tRNA synthetase 1	protein-coding
5861	chr1	26737951	26738350	+	0	NA	intron (NM_139135, intron 4 of 19)	AluSx1|SINE|Alu	42135	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
71713	chr15	20345401	20345600	+	0	NA	Intergenic	Intergenic	62756	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
147503	chr20	59173951	59174350	+	0	NA	intron (NM_178457, intron 1 of 5)	intron (NM_178457, intron 1 of 5)	10329	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
10144	chr1	59947301	59947580	+	0	NA	Intergenic	Intergenic	-20642	NR_134981	1573		NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding
100196	chr17	59004651	59005300	+	0	NA	intron (NR_148346, intron 22 of 23)	intron (NR_148346, intron 22 of 23)	101905	NM_001353082	4591		NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
190540	chr5	180684721	180685050	+	0	NA	non-coding (NR_146728, exon 1 of 2)	non-coding (NR_146728, exon 1 of 2)	789	NR_146728	105377765		NR_146728		LINC02222	-	long intergenic non-protein coding RNA 2222	ncRNA
215360	chr7	157389901	157390950	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	53421	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
135631	chr2	168209971	168210800	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	37210	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
13065	chr1	111473371	111474630	+	0	NA	promoter-TSS (NM_001300835)	promoter-TSS (NM_001300835)	16	NM_001300834	128346		NM_174896	ENSG00000143110	C1orf162	-	chromosome 1 open reading frame 162	protein-coding
45544	chr11	118768501	118769250	+	0	NA	intron (NM_004397, intron 4 of 13)	AluJb|SINE|Alu	22073	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
2948	chr1	11898771	11899480	+	0	NA	Intergenic	Intergenic	-9029	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
221320	chr8	123041551	123043150	+	0	NA	promoter-TSS (NM_001330601)	promoter-TSS (NM_001330601)	-48	NM_024295	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
204308	chr7	2691571	2691930	+	0	NA	intron (NM_001321766, intron 1 of 6)	AluSx4|SINE|Alu	3548	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
106014	chr18	7974071	7974230	+	0	NA	intron (NM_001378146, intron 3 of 29)	intron (NM_001378146, intron 3 of 29)	27275	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
12758	chr1	109627951	109628130	+	0	NA	intron (NM_139156, intron 9 of 17)	intron (NM_139156, intron 9 of 17)	4052	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
156868	chr22	42081671	42081830	+	0	NA	intron (NR_146717, intron 1 of 2)	AluSx|SINE|Alu	1801	NR_146717	91689		NM_033318	ENSG00000183172	SMDT1	C22orf32|DDDD|EMRE	single-pass membrane protein with aspartate rich tail 1	protein-coding
217599	chr8	29655751	29656050	+	0	NA	Intergenic	Intergenic	92209	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
15696	chr1	150988121	150988530	+	0	NA	exon (NM_003568, exon 12 of 14)	exon (NM_003568, exon 12 of 14)	6033	NM_003568	8416		NM_003568	ENSG00000143412	ANXA9	ANX31	annexin A9	protein-coding
78910	chr15	101167921	101168530	+	0	NA	Intergenic	Intergenic	83823	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
233074	chr9	137090971	137091880	+	0	NA	intron (NM_016219, intron 3 of 12)	intron (NM_016219, intron 3 of 12)	4440	NR_045721	11253		NM_016219	ENSG00000177239	MAN1B1	ERMAN1|ERManI|MANA-ER|MRT15	mannosidase alpha class 1B member 1	protein-coding
54926	chr12	96195101	96196450	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	1400	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
181365	chr5	40570421	40570680	+	0	NA	Intergenic	Intergenic	-109365	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
16431	chr1	154567351	154568850	+	0	NA	exon (NM_000748, exon 1 of 6)	exon (NM_000748, exon 1 of 6)	322	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
238891	chrX	154574921	154575350	+	0	NA	Intergenic	L1MC5a|LINE|L1	3887	NR_027401	100132967		NR_027401	ENSG00000279245	FAM223A	CXorf52|LINC00204A|NCRNA00204|NCRNA00204A|SPCX	family with sequence similarity 223 member A	ncRNA
144864	chr20	36903351	36903680	+	0	NA	intron (NM_001363733, intron 13 of 15)	AluSc|SINE|Alu	27377	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
236389	chrX	71105401	71105930	+	0	NA	intron (NR_033212, intron 3 of 5)	intron (NR_033212, intron 3 of 5)	1075	NR_033212	158830		NM_001025265	ENSG00000204165	CXorf65	-	chromosome X open reading frame 65	protein-coding
106387	chr18	13376211	13378080	+	0	NA	intron (NM_001378098, intron 1 of 5)	intron (NM_001378098, intron 1 of 5)	38542	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
183812	chr5	82748701	82748900	+	0	NA	Intergenic	Intergenic	-91355	NR_039773	100616297		NR_039773	ENSG00000283359	MIR3977	-	microRNA 3977	ncRNA
100168	chr17	58624921	58625180	+	0	NA	intron (NM_198393, intron 3 of 32)	intron (NM_198393, intron 3 of 32)	66995	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
117188	chr19	19363201	19363680	+	0	NA	Intergenic	AluYc|SINE|Alu	-22403	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
163694	chr3	52257671	52257830	+	0	NA	intron (NM_025222, intron 8 of 8)	intron (NM_025222, intron 8 of 8)	10611	NR_029660	406890		NR_029660	ENSG00000199150	MIRLET7G	LET7G|MIRNLET7G|hsa-let-7g|let-7g	microRNA let-7g	ncRNA
3858	chr1	16953401	16953600	+	0	NA	intron (NM_014675, intron 21 of 36)	intron (NM_014675, intron 21 of 36)	27120	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
49347	chr12	22160471	22160850	+	0	NA	Intergenic	Intergenic	114442	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
42195	chr11	67995701	67996100	+	0	NA	intron (NM_030930, intron 8 of 10)	intron (NM_030930, intron 8 of 10)	8197	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
64175	chr14	22933221	22933580	+	0	NA	intron (NR_110002, intron 1 of 2)	intron (NR_110002, intron 1 of 2)	3791	NR_110002	101926933		NR_110002	ENSG00000257285	PRMT5-DT	-	PRMT5 divergent transcript	ncRNA
221577	chr8	125220471	125220830	+	0	NA	intron (NR_146191, intron 6 of 8)	intron (NR_146191, intron 6 of 8)	128790	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
23383	chr1	228178921	228179380	+	0	NA	3' UTR (NM_001010867, exon 3 of 3)	3' UTR (NM_001010867, exon 3 of 3)	4580	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
125492	chr2	12504401	12504750	+	0	NA	intron (NR_110196, intron 4 of 5)	MIRb|SINE|MIR	-212297	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
48072	chr12	7133971	7134730	+	0	NA	intron (NM_014718, intron 3 of 17)	intron (NM_014718, intron 3 of 17)	3979	NM_014718	9746		NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
206030	chr7	26857571	26858180	+	0	NA	promoter-TSS (NM_001303468)	promoter-TSS (NM_001303468)	-152	NM_001303468	8935		NM_003930	ENSG00000005020	SKAP2	PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R	src kinase associated phosphoprotein 2	protein-coding
116531	chr19	18194601	18195330	+	0	NA	exon (NM_032683, exon 4 of 5)	exon (NM_032683, exon 4 of 5)	1747	NM_032683	84769		NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial inner membrane protein like 2	protein-coding
233938	chrX	2498621	2499180	+	0	NA	intron (NM_001171136, intron 1 of 1)	intron (NM_001171136, intron 1 of 1)	1639	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
42408	chr11	69052371	69052950	+	0	NA	intron (NM_139075, intron 1 of 24)	intron (NM_139075, intron 1 of 24)	3728	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
214518	chr7	150483751	150485480	+	0	NA	Intergenic	Intergenic	-30257	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
161120	chr3	38346571	38347430	+	0	NA	intron (NR_146068, intron 1 of 16)	CpG	215	NM_001349178	9942		NM_005108	ENSG00000093217	XYLB	-	xylulokinase	protein-coding
204971	chr7	6379751	6379850	+	0	NA	intron (NM_018890, intron 1 of 6)	AluSx|SINE|Alu	5273	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
116816	chr19	18555271	18555930	+	0	NA	Intergenic	AluSq4|SINE|Alu	-2162	NM_001171948	79036		NM_024069	ENSG00000105700	KXD1	BORCS4|C10orf50|C19orf50|KXDL|MST096|MSTP096	KxDL motif containing 1	protein-coding
156896	chr22	42182771	42182930	+	0	NA	intron (NM_005650, intron 2 of 5)	AluSz|SINE|Alu	-38296	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
7154	chr1	32228721	32229650	+	0	NA	exon (NM_003757, exon 10 of 12)	exon (NM_003757, exon 10 of 12)	-6814	NR_133636	56063		NM_019118	ENSG00000160055	TMEM234	AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7	transmembrane protein 234	protein-coding
42160	chr11	67793621	67794180	+	0	NA	intron (NR_024249, intron 3 of 3)	AluSx1|SINE|Alu	11436	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
190273	chr5	179530021	179530870	+	0	NA	intron (NM_001305388, intron 3 of 5)	CpG	7988	NM_001142306	285679		NM_001013718	ENSG00000204661	C5orf60	-	chromosome 5 open reading frame 60	ncRNA
66536	chr14	61770701	61771100	+	0	NA	intron (NM_003082, intron 4 of 9)	AluSx3|SINE|Alu	8480	NM_003082	6617		NM_003082	ENSG00000023608	SNAPC1	PTFgamma|SNAP43	small nuclear RNA activating complex polypeptide 1	protein-coding
33071	chr10	110886201	110886780	+	0	NA	intron (NM_145341, intron 6 of 12)	intron (NM_145341, intron 6 of 12)	-11600	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
89684	chr16	89384251	89385230	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-46178	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
156437	chr22	41235651	41235950	+	0	NA	intron (NM_138481, intron 4 of 5)	MIR|SINE|MIR	5131	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
163793	chr3	52400021	52400700	+	0	NA	TTS (NM_004656)	TTS (NM_004656)	9648	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
105135	chr17	82234401	82235030	+	0	NA	promoter-TSS (NM_001206951)	promoter-TSS (NM_001206951)	-184	NM_001206951	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
67043	chr14	67666771	67667800	+	0	NA	intron (NM_006370, intron 1 of 5)	intron (NM_006370, intron 1 of 5)	7347	NM_006370	10490		NM_006370	ENSG00000100568	VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
56952	chr12	120495351	120498350	+	0	NA	promoter-TSS (NR_038854)	promoter-TSS (NR_038854)	737	NM_003746	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
77247	chr15	81303851	81304980	+	0	NA	intron (NM_172217, intron 16 of 18)	intron (NM_172217, intron 16 of 18)	7445	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
129930	chr2	73737001	73738200	+	0	NA	promoter-TSS (NM_001330389)	promoter-TSS (NM_001330389)	-194	NM_001330387	51002		NM_016058	ENSG00000144034	TPRKB	CGI-121|CGI121|GAMOS5	TP53RK binding protein	protein-coding
149168	chr21	17816451	17816950	+	0	NA	intron (NM_017447, intron 2 of 4)	MIR|SINE|MIR	2656	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
5110	chr1	24867351	24867750	+	0	NA	Intergenic	Intergenic	51866	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
198127	chr6	90412851	90413150	+	0	NA	Intergenic	Intergenic	100258	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
128220	chr2	54048271	54048830	+	0	NA	intron (NM_001320587, intron 2 of 5)	FRAM|SINE|Alu	-67065	NM_001320590	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
127849	chr2	45610301	45611930	+	0	NA	intron (NM_018079, intron 1 of 20)	intron (NM_018079, intron 1 of 20)	152	NM_018079	55133		NM_018079	ENSG00000068784	SRBD1	-	S1 RNA binding domain 1	protein-coding
17100	chr1	156147771	156147930	+	0	NA	Intergenic	Intergenic	-2094	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
62240	chr13	98532171	98532330	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-10125	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
223742	chr8	144505851	144506530	+	0	NA	intron (NR_168477, intron 6 of 9)	CpG-27821	2050	NR_168476	2875		NM_005309	ENSG00000167701	GPT	AAT1|ALT|ALT1|GPT1|SGPT	glutamic--pyruvic transaminase	protein-coding
65363	chr14	50526121	50526380	+	0	NA	intron (NM_198794, intron 2 of 31)	L2c|LINE|L2	6319	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
17468	chr1	156711071	156711450	+	0	NA	Intergenic	Intergenic	-5444	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
29403	chr10	70162351	70163350	+	0	NA	intron (NM_001142648, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	7664	NM_001142648	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
94458	chr17	29256301	29256900	+	0	NA	3' UTR (NM_020772, exon 4 of 4)	3' UTR (NM_020772, exon 4 of 4)	9741	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
239364	chrY	20558701	20558930	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-16896	NM_001278612	9086		NM_004681	ENSG00000198692	EIF1AY	eIF-4C	eukaryotic translation initiation factor 1A Y-linked	protein-coding
205707	chr7	23345901	23346650	+	0	NA	intron (NM_006547, intron 7 of 14)	intron (NM_006547, intron 7 of 14)	46936	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
135709	chr2	168977471	168977630	+	0	NA	intron (NM_003742, intron 11 of 27)	intron (NM_003742, intron 11 of 27)	53774	NM_003742	8647		NM_003742	ENSG00000073734	ABCB11	ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP	ATP binding cassette subfamily B member 11	protein-coding
95066	chr17	32805371	32805730	+	0	NA	intron (NM_015194, intron 1 of 21)	Charlie10|DNA|hAT-Charlie	71574	NM_015194	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
155943	chr22	39680251	39680900	+	0	NA	intron (NM_001003406, intron 32 of 35)	intron (NM_001003406, intron 32 of 35)	109822	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
181957	chr5	55063321	55063980	+	0	NA	Intergenic	Intergenic	-38996	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
13320	chr1	113757751	113758480	+	0	NA	intron (NM_001323050, intron 2 of 15)	AluSq2|SINE|Alu	1040	NM_006608	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
113525	chr19	10119101	10120730	+	0	NA	promoter-TSS (NM_003755)	promoter-TSS (NM_003755)	-16	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
100072	chr17	58247421	58248150	+	0	NA	intron (NR_027647, intron 3 of 11)	MIR3|SINE|MIR	9201	NM_006151	4025		NM_006151	ENSG00000167419	LPO	SPO	lactoperoxidase	protein-coding
63082	chr13	113186151	113186800	+	0	NA	intron (NM_001320657, intron 7 of 13)	intron (NM_001320657, intron 7 of 13)	-21718	NM_001278513	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
131122	chr2	90360051	90360350	+	0	NA	Intergenic	CpG	-722293	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
3388	chr1	15732321	15732580	+	0	NA	exon (NM_015164, exon 18 of 20)	exon (NM_015164, exon 18 of 20)	-3808	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
99414	chr17	50079701	50079930	+	0	NA	intron (NM_002204, intron 21 of 25)	intron (NM_002204, intron 21 of 25)	-14922	NM_001199898	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
93695	chr17	19381071	19381880	+	0	NA	exon (NM_139033, exon 4 of 7)	exon (NM_139033, exon 4 of 7)	2977	NM_139034	5598		NM_002749	ENSG00000166484	MAPK7	BMK1|ERK4|ERK5|PRKM7	mitogen-activated protein kinase 7	protein-coding
181607	chr5	43602151	43603500	+	0	NA	promoter-TSS (NM_001331026)	promoter-TSS (NM_001331026)	150	NM_012343	23530		NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding
32604	chr10	103589001	103589650	+	0	NA	intron (NM_004210, intron 4 of 5)	intron (NM_004210, intron 4 of 5)	-71883	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
27708	chr10	33214171	33214480	+	0	NA	intron (NM_001244973, intron 8 of 16)	intron (NM_001244973, intron 8 of 16)	-97518	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
19763	chr1	182054771	182055000	+	0	NA	3' UTR (NM_001009992, exon 2 of 2)	3' UTR (NM_001009992, exon 2 of 2)	6827	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
88741	chr16	86419271	86419500	+	0	NA	Intergenic	(ATGGTG)n|Simple_repeat|Simple_repeat	-73706	NR_024406	732275		NR_024406	ENSG00000168367	LINC00917	-	long intergenic non-protein coding RNA 917	ncRNA
169748	chr3	172521271	172521430	+	0	NA	intron (NM_001190943, intron 1 of 1)	L1PA8|LINE|L1	2080	NM_001190943	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
184087	chr5	93597051	93597830	+	0	NA	Intergenic	Intergenic	14218	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
40987	chr11	65388971	65390130	+	0	NA	intron (NM_001300833, intron 3 of 9)	intron (NM_001300833, intron 3 of 9)	2913	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
178374	chr4	146488501	146489000	+	0	NA	intron (NR_133924, intron 4 of 9)	intron (NR_133924, intron 4 of 9)	33190	NM_001317816	84068		NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7|SSASKS	solute carrier family 10 member 7	protein-coding
30919	chr10	87094401	87096180	+	0	NA	promoter-TSS (NM_001377161)	promoter-TSS (NM_001377161)	84	NM_001377158	54537		NM_019054	ENSG00000122376	SHLD2	FAM35A|FAM35A1|RINN2|bA163M19.1	shieldin complex subunit 2	protein-coding
120727	chr19	45342101	45342550	+	0	NA	intron (NM_177417, intron 1 of 12)	AluJb|SINE|Alu	1575	NM_177417	147700		NM_145275	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
1616	chr1	3678601	3679150	+	0	NA	intron (NM_001204185, intron 1 of 12)	MER5A|DNA|hAT-Charlie	-11797	NM_001204190	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
87522	chr16	71892971	71893580	+	0	NA	Intergenic	AluY|SINE|Alu	-1133	NM_001270976	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
69269	chr14	93059221	93059600	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	-8042	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
111439	chr19	3806801	3807100	+	0	NA	intron (NM_015174, intron 18 of 18)	intron (NM_015174, intron 18 of 18)	-5151	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
90531	chr17	1482501	1483130	+	0	NA	intron (NM_001080779, intron 4 of 31)	intron (NM_001080779, intron 4 of 31)	2586	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
223411	chr8	143932671	143933030	+	0	NA	exon (NM_000445, exon 15 of 33)	exon (NM_000445, exon 15 of 33)	6747	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
139133	chr2	218997621	218998080	+	0	NA	Intergenic	Intergenic	3858	NR_029867	494324		NR_029867	ENSG00000198973	MIR375	MIRN375|hsa-mir-375|miRNA375|mir-375	microRNA 375	ncRNA
93660	chr17	19200701	19200900	+	0	NA	Intergenic	AluJr|SINE|Alu	-10555	NR_006881	780853		NR_006881		SNORD3C	RNU3-3|U3-3	small nucleolar RNA, C/D box 3C	snoRNA
97346	chr17	43286151	43286900	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2196	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
161773	chr3	44981471	44982250	+	0	NA	intron (NR_023353, intron 1 of 6)	AluJr|SINE|Alu	5611	NR_023353	23016		NM_015004	ENSG00000075914	EXOSC7	EAP1|RRP42|Rrp42p|hRrp42p|p8	exosome component 7	protein-coding
94810	chr17	31309601	31309900	+	0	NA	intron (NM_006495, intron 1 of 1)	intron (NM_006495, intron 1 of 1)	4304	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
72096	chr15	28922171	28922700	+	0	NA	intron (NM_001353790, intron 2 of 14)	intron (NM_001353790, intron 2 of 14)	798	NM_001130414	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
167645	chr3	129611201	129611680	+	0	NA	Intergenic	Intergenic	-4764	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
149072	chr21	15729551	15730900	+	0	NA	5' UTR (NM_013396, exon 1 of 24)	5' UTR (NM_013396, exon 1 of 24)	243	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
25062	chr10	3803021	3803550	+	0	NA	Intergenic	Intergenic	-18004	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
51830	chr12	53453571	53453800	+	0	NA	intron (NM_031989, intron 1 of 14)	intron (NM_031989, intron 1 of 14)	1583	NM_001098620	5094		NM_005016	ENSG00000197111	PCBP2	HNRNPE2|HNRPE2|hnRNP-E2	poly(rC) binding protein 2	protein-coding
211108	chr7	102511101	102511330	+	0	NA	intron (NM_001367767, intron 2 of 20)	intron (NM_001367767, intron 2 of 20)	6562	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
170144	chr3	183447151	183448450	+	0	NA	non-coding (NR_038301, exon 1 of 4)	non-coding (NR_038301, exon 1 of 4)	149	NR_038301	100505687		NR_038301	ENSG00000291106	SNHG33	LINC00888|PAINT	small nucleolar RNA host gene 33	ncRNA
200979	chr6	139368771	139368930	+	0	NA	Intergenic	Intergenic	5363	NM_001168389	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
130977	chr2	87593721	87594280	+	0	NA	Intergenic	Intergenic	-35755	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
76465	chr15	74854821	74855080	+	0	NA	intron (NM_001320778, intron 1 of 9)	intron (NM_001320778, intron 1 of 9)	-11794	NM_001284364	25989		NM_001099436	ENSG00000140474	ULK3	-	unc-51 like kinase 3	protein-coding
56617	chr12	118148671	118149030	+	0	NA	TTS (NM_016281)	TTS (NM_016281)	12726	NM_002567	5037		NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
223597	chr8	144303571	144304230	+	0	NA	intron (NM_005526, intron 1 of 12)	L1M4b|LINE|L1	12296	NM_005526	3297		NM_005526	ENSG00000185122	HSF1	HSTF1	heat shock transcription factor 1	protein-coding
238397	chrX	150478571	150478730	+	0	NA	intron (NM_001177466, intron 3 of 5)	intron (NM_001177466, intron 3 of 5)	33196	NM_001177466	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
195952	chr6	41937771	41938730	+	0	NA	intron (NM_001136126, intron 1 of 3)	intron (NM_001136126, intron 1 of 3)	3558	NM_001760	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
106881	chr18	24414321	24414580	+	0	NA	Intergenic	Intergenic	-12220	NM_018439	55364		NM_018439	ENSG00000154059	IMPACT	RWDD5	impact RWD domain protein	protein-coding
108399	chr18	69893871	69894030	+	0	NA	intron (NM_006566, intron 4 of 6)	intron (NM_006566, intron 4 of 6)	53923	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
88978	chr16	87871101	87872100	+	0	NA	Intergenic	Intergenic	-2093	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
203246	chr6	169188271	169188780	+	0	NA	Intergenic	Intergenic	-5785	NR_125863	101929504		NR_125863	ENSG00000261039	LINC02544	-	long intergenic non-protein coding RNA 2544	ncRNA
161674	chr3	43359101	43359500	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-7338	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
80280	chr16	2243151	2243450	+	0	NA	intron (NM_001178029, intron 5 of 6)	intron (NM_001178029, intron 5 of 6)	6856	NM_001301680	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
44087	chr11	95701501	95701950	+	0	NA	Intergenic	Intergenic	88057	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
210795	chr7	100837071	100837980	+	0	NA	non-coding (NR_146550, exon 2 of 2)	non-coding (NR_146550, exon 2 of 2)	-10002	NM_004444	2050		NM_004444	ENSG00000196411	EPHB4	CMAVM2|HFASD|HTK|LMPHM7|MYK1|TYRO11	EPH receptor B4	protein-coding
34019	chr10	124707071	124707630	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	3322	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
49149	chr12	14946401	14946900	+	0	NA	intron (NR_135637, intron 2 of 3)	(TCCACA)n|Simple_repeat|Simple_repeat	2246	NR_135637	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
50396	chr12	47302001	47302400	+	0	NA	Intergenic	Intergenic	5199	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
188709	chr5	157310371	157310530	+	0	NA	intron (NM_014376, intron 10 of 30)	intron (NM_014376, intron 10 of 30)	35227	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
31406	chr10	95445821	95446180	+	0	NA	intron (NM_001384455, intron 1 of 25)	intron (NM_001384455, intron 1 of 25)	-4820	NM_001034955	10580		NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding
215113	chr7	155335351	155335650	+	0	NA	Intergenic	Intergenic	32433	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
27342	chr10	30670771	30671330	+	0	NA	Intergenic	Intergenic	-21224	NR_036438	645954		NR_036438		SVIL2P	SVILP1	supervillin family member 2, pseudogene	pseudo
1783	chr1	6099571	6100430	+	0	NA	3' UTR (NM_003636, exon 16 of 16)	3' UTR (NM_003636, exon 16 of 16)	54112	NM_001199863	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
76490	chr15	74903071	74903230	+	0	NA	TTS (NM_001289156)	TTS (NM_001289156)	3701	NR_135852	57184		NM_020447	ENSG00000178761	FAM219B	C15orf17	family with sequence similarity 219 member B	protein-coding
195602	chr6	37622671	37623200	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-67513	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
140180	chr2	231661801	231662800	+	0	NA	Intergenic	CpG	-46225	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
108093	chr18	61892751	61893580	+	0	NA	promoter-TSS (NM_173557)	promoter-TSS (NM_173557)	-158	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
52744	chr12	56639301	56639580	+	0	NA	intron (NM_001686, intron 8 of 9)	intron (NM_001686, intron 8 of 9)	-3081	NM_013449	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
31355	chr10	93463001	93463280	+	0	NA	intron (NM_133337, intron 1 of 52)	intron (NM_133337, intron 1 of 52)	19194	NM_133337	26509		NM_013451	ENSG00000138119	MYOF	FER1L3|HAE7	myoferlin	protein-coding
231094	chr9	129798571	129799130	+	0	NA	Intergenic	AluSc8|SINE|Alu	-4293	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
50851	chr12	49128051	49128730	+	0	NA	exon (NM_006082, exon 4 of 4)	exon (NM_006082, exon 4 of 4)	3005	NM_006082	10376		NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding
142703	chr20	8156171	8157050	+	0	NA	intron (NM_015192, intron 2 of 31)	intron (NM_015192, intron 2 of 31)	24344	NM_182734	23236		NM_015192	ENSG00000182621	PLCB1	DEE12|EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B	phospholipase C beta 1	protein-coding
85958	chr16	57268821	57269480	+	0	NA	intron (NM_015993, intron 1 of 3)	intron (NM_015993, intron 1 of 3)	15522	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
36587	chr11	6703501	6703700	+	0	NA	Intergenic	Intergenic	18279	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
46519	chr11	128453201	128453630	+	0	NA	Intergenic	Intergenic	68895	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
202975	chr6	161271071	161271900	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	2576	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
33803	chr10	123150971	123151600	+	0	NA	TTS (NM_005519)	TTS (NM_005519)	-2959	NM_001007793	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
127876	chr2	45891851	45892150	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	240325	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
158509	chr3	3128651	3128950	+	0	NA	intron (NR_159937, intron 1 of 9)	PABL_A|LTR|ERV1	1860	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
199969	chr6	127971501	127973000	+	0	NA	intron (NM_001291981, intron 32 of 32).2	intron (NM_001291981, intron 32 of 32).2	-53619	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
50158	chr12	45913871	45914230	+	0	NA	Intergenic	Intergenic	76524	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
133026	chr2	111883451	111884750	+	0	NA	promoter-TSS (NM_022662)	promoter-TSS (NM_022662)	93	NM_022662	64682		NM_022662	ENSG00000153107	ANAPC1	APC1|MCPR|TSG24	anaphase promoting complex subunit 1	protein-coding
122428	chr19	49465471	49465630	+	0	NA	intron (NM_001145396, intron 11 of 15)	intron (NM_001145396, intron 11 of 15)	-8665	NM_001204502	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
12278	chr1	100532071	100532330	+	0	NA	Intergenic	L2c|LINE|L2	-5939	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
212799	chr7	130207021	130207280	+	0	NA	promoter-TSS (NM_145268)	promoter-TSS (NM_145268)	-710	NM_145268	136263		NM_145268	ENSG00000165120	SSMEM1	C7orf45	serine rich single-pass membrane protein 1	protein-coding
139716	chr2	227813721	227813980	+	0	NA	promoter-TSS (NM_001130046)	promoter-TSS (NM_001130046)	8	NM_004591	6364		NM_004591	ENSG00000115009	CCL20	CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38	C-C motif chemokine ligand 20	protein-coding
96642	chr17	40605101	40606330	+	0	NA	Intergenic	Intergenic	-40243	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
3596	chr1	16235121	16235380	+	0	NA	intron (NM_030907, intron 1 of 4)	intron (NM_030907, intron 1 of 4)	1933	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
22150	chr1	212070651	212071000	+	0	NA	intron (NM_001286229, intron 8 of 12)	intron (NM_001286229, intron 8 of 12)	-6788	NR_036068	100422947		NR_036068	ENSG00000264358	MIR3122	mir-3122	microRNA 3122	ncRNA
83216	chr16	23727821	23728150	+	0	NA	Intergenic	Intergenic	-14763	NM_001308220	10595		NM_033266	ENSG00000134398	ERN2	IRE1-BETA|IRE1b|IRE2p|hIRE2p	endoplasmic reticulum to nucleus signaling 2	protein-coding
235265	chrX	41737021	41737370	+	0	NA	intron (NM_001126055, intron 5 of 24)	MLT1G1|LTR|ERVL-MaLR	13014	NM_080817	27197		NM_080817	ENSG00000171657	GPR82	-	G protein-coupled receptor 82	protein-coding
150181	chr21	39272301	39272500	+	0	NA	intron (NM_033656, intron 13 of 40)	AluY|SINE|Alu	41232	NM_033656	54014		NM_018963	ENSG00000185658	BRWD1	C21orf107|CILD51|DCAF19|N143|WDR9|WRD9	bromodomain and WD repeat domain containing 1	protein-coding
73031	chr15	40788971	40789330	+	0	NA	intron (NM_018163, intron 1 of 10)	intron (NM_018163, intron 1 of 10)	-17939	NM_001258420	84936		NM_032850	ENSG00000166140	ZFYVE19	ANCHR|MPFYVE|PFIC9	zinc finger FYVE-type containing 19	protein-coding
47711	chr12	6449101	6449530	+	0	NA	intron (NR_015382, intron 1 of 5)	AluSg7|SINE|Alu	2202	NR_015382	678655		NR_015382	ENSG00000215039	CD27-AS1	-	CD27 antisense RNA 1	ncRNA
109180	chr19	347371	347730	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2709	NM_017550	54531		NM_017550	ENSG00000105556	MIER2	KIAA1193|Mi-er2	MIER family member 2	protein-coding
18369	chr1	161312801	161313000	+	0	NA	Intergenic	AluSz|SINE|Alu	-1481	NM_001278172	6391		NM_003001	ENSG00000143252	SDHC	CYB560|CYBL|PGL3|PPGL3|QPS1|SDH3	succinate dehydrogenase complex subunit C	protein-coding
2712	chr1	10651551	10651650	+	0	NA	intron (NM_017766, intron 11 of 15)	intron (NM_017766, intron 11 of 15)	145046	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
113847	chr19	10637301	10637580	+	0	NA	intron (NM_001363611, intron 16 of 22)	AluJr|SINE|Alu	11887	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
79607	chr16	1072101	1072300	+	0	NA	promoter-TSS (NM_001172560)	promoter-TSS (NM_001172560)	-556	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
180883	chr5	33934751	33935350	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-1336	NM_016568	51289		NM_016568	ENSG00000182631	RXFP3	GPCR135|RLN3R1|RXFPR3|SALPR	relaxin family peptide receptor 3	protein-coding
209686	chr7	80919071	80919330	+	0	NA	promoter-TSS (NM_006379)	promoter-TSS (NM_006379)	-149	NM_006379	10512		NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	semaphorin 3C	protein-coding
143362	chr20	26010871	26011050	+	0	NA	intron (NR_004846, intron 1 of 4)	LTR25|LTR|ERV1	1161	NR_004846	100134868		NR_004846		LOC100134868	-	uncharacterized LOC100134868	ncRNA
142604	chr20	5588351	5588650	+	0	NA	intron (NM_019593, intron 4 of 19)	AluSz|SINE|Alu	22506	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
184314	chr5	96901471	96901630	+	0	NA	exon (NM_022350, exon 11 of 19)	exon (NM_022350, exon 11 of 19)	25050	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
141815	chr20	346351	346450	+	0	NA	promoter-TSS (NM_024958)	promoter-TSS (NM_024958)	-711	NM_001323684	80023		NM_024958	ENSG00000125841	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
196984	chr6	53236051	53236550	+	0	NA	Intergenic	Intergenic	-40693	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
125985	chr2	25289651	25290150	+	0	NA	intron (NR_135490, intron 3 of 23)	intron (NR_135490, intron 3 of 23)	-37585	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
5456	chr1	25620171	25621000	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	3794	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
194826	chr6	34363071	34363430	+	0	NA	intron (NM_001202470, intron 5 of 8)	intron (NM_001202470, intron 5 of 8)	29419	NM_006703	11165		NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
230238	chr9	127878601	127879130	+	0	NA	intron (NM_001318121, intron 1 of 6)	intron (NM_001318121, intron 1 of 6)	756	NM_001318121	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
20577	chr1	198740421	198740750	+	0	NA	intron (NM_002838, intron 23 of 32)	AluSz|SINE|Alu	101545	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
92227	chr17	7887101	7888800	+	0	NA	promoter-TSS (NM_001005273)	promoter-TSS (NM_001005273)	-839	NM_001005273	1107		NM_001272	ENSG00000170004	CHD3	Mi-2a|Mi2-ALPHA|SNIBCPS|ZFH	chromodomain helicase DNA binding protein 3	protein-coding
131297	chr2	96107971	96108580	+	0	NA	Intergenic	Intergenic	8296	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
188631	chr5	157216701	157217080	+	0	NA	intron (NM_005546, intron 4 of 16)	intron (NM_005546, intron 4 of 16)	36050	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
201299	chr6	144343531	144345380	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	52718	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
98629	chr17	47804801	47805600	+	0	NA	Intergenic	AluSg7|SINE|Alu	16594	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
142954	chr20	19441101	19441380	+	0	NA	intron (NM_020689, intron 2 of 16)	MIR1_Amn|SINE|MIR	-156644	NR_024564	100130264		NR_024564	ENSG00000179447	SLC24A3-AS1	-	SLC24A3 antisense RNA 1	ncRNA
193973	chr6	31722071	31722230	+	0	NA	promoter-TSS (NM_025261)	promoter-TSS (NM_025261)	-404	NM_025261	80740		NM_025261	ENSG00000204421	LY6G6C	C6orf24|G6c|NG24	lymphocyte antigen 6 family member G6C	protein-coding
166278	chr3	112489951	112490550	+	0	NA	intron (NM_001085357, intron 1 of 3)	intron (NM_001085357, intron 1 of 3)	9222	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
137486	chr2	197139921	197140930	+	0	NA	intron (NM_153697, intron 3 of 9)	AluJr4|SINE|Alu	-57566	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
91550	chr17	5036021	5036280	+	0	NA	promoter-TSS (NM_017986)	promoter-TSS (NM_017986)	-718	NM_001104577	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
121453	chr19	47042101	47042300	+	0	NA	intron (NM_002517, intron 10 of 11)	AluSx3|SINE|Alu	6424	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
148885	chr21	8455221	8456600	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	14764	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
26646	chr10	22568701	22569300	+	0	NA	intron (NM_001330062, intron 5 of 9)	intron (NM_001330062, intron 5 of 9)	-131071	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
171077	chr3	195458121	195458760	+	0	NA	Intergenic	Intergenic	-15420	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
189095	chr5	170300251	170300880	+	0	NA	Intergenic	MIRb|SINE|MIR	-2788	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
215736	chr8	1786821	1787330	+	0	NA	TTS (NM_018941)	TTS (NM_018941)	-14050	NR_037445	100500912		NR_037445	ENSG00000283858	MIR3674	-	microRNA 3674	ncRNA
60762	chr13	44988871	44990330	+	0	NA	promoter-TSS (NM_012345)	promoter-TSS (NM_012345)	62	NM_018559	55425		NM_018559	ENSG00000133114	GPALPP1	AD029|KIAA1704|LSR7|bA245H20.2	GPALPP motifs containing 1	protein-coding
8935	chr1	44033901	44034500	+	0	NA	Intergenic	Intergenic	-2738	NM_001328630	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
184881	chr5	112617121	112617580	+	0	NA	Intergenic	Intergenic	-11086	NR_104672	102467214		NR_104672	ENSG00000250358	LINC02200	-	long intergenic non-protein coding RNA 2200	ncRNA
239064	chrY	7296321	7297050	+	0	NA	intron (NR_028062, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	22713	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
54327	chr12	89644601	89645000	+	0	NA	intron (NM_001366523, intron 2 of 21)	intron (NM_001366523, intron 2 of 21)	64038	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
229987	chr9	126825651	126826150	+	0	NA	intron (NM_014007, intron 2 of 2)	AluSz|SINE|Alu	20860	NM_014007	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
165424	chr3	98508471	98508830	+	0	NA	Intergenic	L2c|LINE|L2	10969	NM_001004737	402135		NM_001004737	ENSG00000231861	OR5K2	OR3-9	olfactory receptor family 5 subfamily K member 2	protein-coding
119600	chr19	40752431	40752780	+	0	NA	intron (NM_004596, intron 1 of 5)	AluJo|SINE|Alu	1402	NM_004596	6626		NM_004596	ENSG00000077312	SNRPA	Mud1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding
214242	chr7	148878651	148879150	+	0	NA	intron (NM_001203248, intron 1 of 19)	AluJb|SINE|Alu	4585	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
73873	chr15	50350051	50350680	+	0	NA	non-coding (NR_026891, exon 1 of 1)	non-coding (NR_026891, exon 1 of 1)	-3809	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
206284	chr7	29978051	29978350	+	0	NA	intron (NM_001145514, intron 1 of 7)	MER102a|DNA|hAT-Charlie	11601	NM_014766	9805		NM_014766	ENSG00000136193	SCRN1	SES1	secernin 1	protein-coding
29433	chr10	70348201	70348750	+	0	NA	intron (NM_001278214, intron 1 of 3)	intron (NM_001278214, intron 1 of 3)	28304	NM_001278213	55222		NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
157885	chr22	49733921	49734380	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-76631	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
17130	chr1	156174971	156175330	+	0	NA	exon (NM_001193300, exon 14 of 16)	exon (NM_001193300, exon 14 of 16)	-18954	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
219106	chr8	65943301	65943500	+	0	NA	Intergenic	Intergenic	-71578	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
144635	chr20	35947401	35948200	+	0	NA	3' UTR (NM_016436, exon 18 of 18)	3' UTR (NM_016436, exon 18 of 18)	6702	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
81856	chr16	11623651	11623950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-36334	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
191999	chr6	16318371	16318850	+	0	NA	intron (NM_000332, intron 8 of 8)	intron (NM_000332, intron 8 of 8)	80023	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
136982	chr2	190481621	190481950	+	0	NA	intron (NM_001375987, intron 3 of 6)	intron (NM_001375987, intron 3 of 6)	12292	NM_001375993	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
160544	chr3	30672251	30672700	+	0	NA	intron (NM_001024847, intron 5 of 7)	intron (NM_001024847, intron 5 of 7)	65874	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
57657	chr12	122637801	122638200	+	0	NA	Intergenic	Intergenic	57999	NR_162150	113218511		NR_162150		MIR9902-2	-	microRNA 9902-2	ncRNA
5113	chr1	24870621	24871780	+	0	NA	Intergenic	Intergenic	48216	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
119950	chr19	41875001	41876130	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-1714	NM_021601	973		NM_001783	ENSG00000105369	CD79A	IGA|IGAlpha|MB-1|MB1	CD79a molecule	protein-coding
6295	chr1	27616501	27617080	+	0	NA	intron (NM_001042747, intron 7 of 12)	MIR3|SINE|MIR	9450	NM_001042747	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
123622	chr19	54551051	54552130	+	0	NA	Intergenic	Intergenic	18898	NR_026716	90011		NM_033206	ENSG00000290933	KIR3DX1	KIR3DL0|LENG12	killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)	pseudo
136213	chr2	174579701	174580330	+	0	NA	intron (NM_001375837, intron 3 of 4)	AluSz6|SINE|Alu	17789	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
39368	chr11	59644701	59644900	+	0	NA	intron (NM_152716, intron 15 of 18)	FLAM_C|SINE|Alu	24237	NM_152716	219988		NM_152716	ENSG00000166889	PATL1	Pat1b|hPat1b	PAT1 homolog 1, processing body mRNA decay factor	protein-coding
66506	chr14	61710871	61711700	+	0	NA	intron (NM_001243084, intron 1 of 14)	AluJo|SINE|Alu	13663	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
203273	chr6	169721901	169722100	+	0	NA	intron (NM_133325, intron 1 of 11)	MIR|SINE|MIR	2500	NM_133325	55274		NM_018288	ENSG00000130024	PHF10	BAF45A|SMARCG4|XAP135	PHD finger protein 10	protein-coding
187630	chr5	142993901	142994500	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-125290	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
226262	chr9	67857871	67858230	+	0	NA	promoter-TSS (NM_032250)	promoter-TSS (NM_032250)	-881	NM_032250	84210		NM_032250	ENSG00000260691	ANKRD20A1	ANKRD20A	ankyrin repeat domain 20 family member A1	protein-coding
116504	chr19	18147571	18147800	+	0	NA	intron (NM_015016, intron 26 of 26)	intron (NM_015016, intron 26 of 26)	-5478	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
67920	chr14	74624321	74624580	+	0	NA	Intergenic	L2c|LINE|L2	-12213	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
42438	chr11	69296801	69297700	+	0	NA	TTS (NM_001300924)	TTS (NM_001300924)	3095	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
126551	chr2	28612871	28613500	+	0	NA	intron (NM_153021, intron 43 of 57)	AluJr4|SINE|Alu	46828	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
185294	chr5	126594571	126595450	+	0	NA	exon (NM_001202404, exon 1 of 16)	exon (NM_001202404, exon 1 of 16)	209	NM_001202404	501		NM_001182	ENSG00000164904	ALDH7A1	ATQ1|EPD|EPEO4|PDE	aldehyde dehydrogenase 7 family member A1	protein-coding
39677	chr11	61698251	61698950	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	18209	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
217593	chr8	29584321	29584730	+	0	NA	Intergenic	Intergenic	163584	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
16860	chr1	155745251	155746490	+	0	NA	non-coding (NR_024117, exon 1 of 13).2	non-coding (NR_024117, exon 1 of 13).2	102	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
206330	chr7	30314671	30314830	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-24860	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
155976	chr22	39905701	39905900	+	0	NA	intron (NM_004810, intron 1 of 7)	MIR|SINE|MIR	4716	NM_004810	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
9411	chr1	47508971	47509330	+	0	NA	Intergenic	Intergenic	71106	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
192275	chr6	20407201	20407480	+	0	NA	intron (NM_001243076, intron 1 of 6)	intron (NM_001243076, intron 1 of 6)	3661	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
161746	chr3	44530051	44530230	+	0	NA	Intergenic	Intergenic	-19523	NM_001287349	285346		NM_001287349	ENSG00000178917	ZNF852	-	zinc finger protein 852	protein-coding
99598	chr17	50538351	50538730	+	0	NA	intron (NM_017957, intron 3 of 9)	intron (NM_017957, intron 3 of 9)	214	NR_135675	105371824		NR_135675	ENSG00000250286	LOC105371824	-	uncharacterized LOC105371824	ncRNA
3229	chr1	13779621	13779880	+	0	NA	exon (NM_012231, exon 8 of 10)	exon (NM_012231, exon 8 of 10)	30335	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
209269	chr7	75910171	75910530	+	0	NA	Intergenic	AluJo|SINE|Alu	-4805	NM_001382658	5447		NM_000941	ENSG00000127948	POR	CPR|CYPOR|P450R	cytochrome p450 oxidoreductase	protein-coding
139267	chr2	219455651	219455750	+	0	NA	intron (NM_005876, intron 6 of 40)	intron (NM_005876, intron 6 of 40)	-5112	NM_001173476	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
151235	chr21	45281421	45281930	+	0	NA	intron (NM_133635, intron 4 of 8)	intron (NM_133635, intron 4 of 8)	6220	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
168858	chr3	152282351	152282450	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-12774	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
147509	chr20	59180221	59180480	+	0	NA	intron (NM_178457, intron 1 of 5)	intron (NM_178457, intron 1 of 5)	16529	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
33180	chr10	113094001	113094750	+	0	NA	intron (NM_001146283, intron 5 of 12)	intron (NM_001146283, intron 5 of 12)	-32258	NM_001349871	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
16895	chr1	155864101	155864300	+	0	NA	intron (NM_152280, intron 1 of 3)	AluJb|SINE|Alu	4633	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
106087	chr18	9135801	9138650	+	0	NA	promoter-TSS (NR_110771)	promoter-TSS (NR_110771)	-338	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
236089	chrX	56777601	56778000	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-40216	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
154183	chr22	31338051	31338350	+	0	NA	TTS (NR_110542)	TTS (NR_110542)	2851	NR_110542	101929760		NR_110542	ENSG00000228839	PIK3IP1-DT	PIK3IP1-AS1	PIK3IP1 divergent transcript	ncRNA
16401	chr1	154433351	154433450	+	0	NA	intron (NM_001206866, intron 3 of 6)	intron (NM_001206866, intron 3 of 6)	-26836	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
72927	chr15	40407201	40407700	+	0	NA	intron (NR_148925, intron 1 of 13)	L2|LINE|L2	1655	NM_001159508	3712		NM_002225	ENSG00000128928	IVD	ACAD2|IVDH	isovaleryl-CoA dehydrogenase	protein-coding
41193	chr11	65642021	65643000	+	0	NA	exon (NM_006747, exon 4 of 16)	exon (NM_006747, exon 4 of 16)	2389	NM_153253	6494		NM_006747	ENSG00000213445	SIPA1	SPA1	signal-induced proliferation-associated 1	protein-coding
181065	chr5	36419521	36419880	+	0	NA	Intergenic	Intergenic	-117798	NM_001323274	202151		NM_145000	ENSG00000164188	RANBP3L	-	RAN binding protein 3 like	protein-coding
228574	chr9	104091721	104092180	+	0	NA	intron (NR_121580, intron 1 of 2)	intron (NR_121580, intron 1 of 2)	524	NR_121580	101928550		NR_121580	ENSG00000270332	SMC2-DT	SMC2-AS1	SMC2 divergent transcript	ncRNA
233374	chr9	137509951	137510300	+	0	NA	intron (NM_001098537, intron 12 of 34)	LTR13|LTR|ERVK	40277	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
135604	chr2	168054621	168054880	+	0	NA	intron (NM_013233, intron 14 of 17)	intron (NM_013233, intron 14 of 17)	-113606	NR_131227	105616981		NR_131227	ENSG00000235335	B3GALT1-AS1	-	B3GALT1 antisense RNA 1	ncRNA
208485	chr7	67260151	67260430	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-18002	NM_001382715	442572		NM_001382715	ENSG00000230358	SPDYE21	SPDYE21P	speedy/RINGO cell cycle regulator family member E21	protein-coding
114927	chr19	13963221	13963930	+	0	NA	exon (NM_002918, exon 18 of 21)	exon (NM_002918, exon 18 of 21)	-10183	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
201688	chr6	149560701	149561550	+	0	NA	Intergenic	Intergenic	-5250	NM_138785	116254		NM_138785	ENSG00000055211	GINM1	C6orf72	glycosylated integral membrane protein 1	protein-coding
106314	chr18	12890121	12890380	+	0	NA	Intergenic	AluSg|SINE|Alu	-5915	NM_080422	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
204008	chr7	1883921	1884180	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	-39797	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
5326	chr1	25242701	25243430	+	0	NA	intron (NR_135780, intron 4 of 4)	AluSg|SINE|Alu	4389	NR_135786	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
58048	chr12	124468151	124468450	+	0	NA	intron (NM_001077261, intron 6 of 47)	intron (NM_001077261, intron 6 of 47)	99312	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
205252	chr7	8124471	8124830	+	0	NA	intron (NR_146928, intron 13 of 14)	intron (NR_146928, intron 13 of 14)	137517	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
39924	chr11	62528771	62528930	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	16814	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
221020	chr8	116473721	116473980	+	0	NA	Intergenic	Intergenic	-148791	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
190279	chr5	179553671	179553830	+	0	NA	intron (NM_025158, intron 1 of 17)	AluSx|SINE|Alu	3196	NM_025158	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
105561	chr18	10021	11430	+	0	NA	promoter-TSS (NR_149138).2	promoter-TSS (NR_149138).2	-835	NR_149138	102724130		NR_149137		LINC02564	-	long intergenic non-protein coding RNA 2564	ncRNA
215060	chr7	152759301	152760380	+	0	NA	promoter-TSS (NM_001350946)	promoter-TSS (NM_001350946)	88	NM_020445	57180		NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	actin related protein 3B	protein-coding
72674	chr15	38543771	38544230	+	0	NA	intron (NM_001128602, intron 2 of 15)	L1MEf|LINE|L1	20814	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
143178	chr20	24164271	24164650	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-35307	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
135954	chr2	172079901	172080480	+	0	NA	exon (NM_199227, exon 9 of 10)	exon (NM_199227, exon 9 of 10)	-5317	NM_001038493	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
201415	chr6	146638551	146638730	+	0	NA	intron (NM_024694, intron 2 of 35)	L1PA4|LINE|L1	39668	NM_024694	79747		NM_024694	ENSG00000118492	ADGB	C6orf103|CAPN16	androglobin	protein-coding
90429	chr17	1352701	1353530	+	0	NA	intron (NR_024058, intron 6 of 6)	intron (NR_024058, intron 6 of 6)	47107	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
124145	chr19	55697821	55698550	+	0	NA	3' UTR (NM_001130072, exon 11 of 11)	3' UTR (NM_001130072, exon 11 of 11)	21560	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
236383	chrX	71099301	71099530	+	0	NA	intron (NM_005938, intron 1 of 2)	intron (NM_005938, intron 1 of 2)	3564	NM_001170931	4303		NM_005938	ENSG00000184481	FOXO4	AFX|AFX1|MLLT7	forkhead box O4	protein-coding
208618	chr7	72962671	72963400	+	0	NA	intron (NM_198924, intron 2 of 4)	intron (NM_198924, intron 2 of 4)	3918	NM_001317815	378108		NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
27820	chr10	38014051	38014350	+	0	NA	intron (NM_001278177, intron 2 of 4)	AluSz|SINE|Alu	3525	NM_001324177	7581		NM_006954	ENSG00000189180	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
30116	chr10	74003171	74003930	+	0	NA	intron (NM_014000, intron 1 of 21)	intron (NM_014000, intron 1 of 21)	5434	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
193946	chr6	31664301	31665200	+	0	NA	intron (NM_001199240, intron 2 of 3).7	intron (NM_001199240, intron 2 of 3).7	247	NM_033177	7918		NM_033177	ENSG00000204438	GPANK1	ANKRD59|BAT4|D6S54E|G5|GPATCH10	G-patch domain and ankyrin repeats 1	protein-coding
72715	chr15	38666821	38667300	+	0	NA	Intergenic	Intergenic	-29538	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
52185	chr12	54328321	54329000	+	0	NA	intron (NM_001271734, intron 1 of 7)	intron (NM_001271734, intron 1 of 7)	3529	NM_016057	22818		NM_016057	ENSG00000111481	COPZ1	CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP	COPI coat complex subunit zeta 1	protein-coding
46751	chr11	129344301	129344730	+	0	NA	Intergenic	L1PA3|LINE|L1	-31333	NM_003658	8538		NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding
83453	chr16	27329271	27329830	+	0	NA	intron (NM_001257997, intron 1 of 9)	AluSz|SINE|Alu	15576	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
127843	chr2	45567701	45568750	+	0	NA	intron (NM_018079, intron 9 of 20)	intron (NM_018079, intron 9 of 20)	43042	NM_018079	55133		NM_018079	ENSG00000068784	SRBD1	-	S1 RNA binding domain 1	protein-coding
59662	chr13	28531601	28531800	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-36572	NM_001160030	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
193690	chr6	31114221	31114550	+	0	NA	promoter-TSS (NM_014068).6	promoter-TSS (NM_014068).6	-415	NM_014068	170679		NM_014068	ENSG00000204540	PSORS1C1	C6orf16|SEEK1	psoriasis susceptibility 1 candidate 1	protein-coding
95710	chr17	38550901	38551300	+	0	NA	intron (NM_025248, intron 15 of 18)	intron (NM_025248, intron 15 of 18)	54852	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
138788	chr2	216084551	216085500	+	0	NA	intron (NM_001142310, intron 2 of 3)	AluSx3|SINE|Alu	3106	NM_138390	92691		NM_138390	ENSG00000163449	TMEM169	-	transmembrane protein 169	protein-coding
2285	chr1	8953951	8954250	+	0	NA	intron (NM_001215, intron 2 of 7)	MER41A|LTR|ERV1	8232	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
171871	chr4	763801	764980	+	0	NA	intron (NM_001317836, intron 10 of 11)	intron (NM_001317836, intron 10 of 11)	17458	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
2333	chr1	9199771	9199930	+	0	NA	Intergenic	Intergenic	-17512	NR_132742	106614088		NR_132742	ENSG00000228526	MIR34AHG	lnc34a	MIR34A host gene	ncRNA
13842	chr1	117639401	117639600	+	0	NA	Intergenic	AluSq2|SINE|Alu	33452	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
224995	chr9	33113751	33114380	+	0	NA	intron (NM_001378496, intron 3 of 4)	intron (NM_001378496, intron 3 of 4)	5373	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
135703	chr2	168964451	168964980	+	0	NA	intron (NM_003742, intron 17 of 27)	intron (NM_003742, intron 17 of 27)	63424	NM_001081686	57818		NM_021176	ENSG00000152254	G6PC2	IGRP	glucose-6-phosphatase catalytic subunit 2	protein-coding
61487	chr13	52461321	52461650	+	0	NA	exon (NM_001098525, exon 4 of 9)	exon (NM_001098525, exon 4 of 9)	5513	NM_001286686	26586		NM_018204	ENSG00000136108	CKAP2	LB1|TMAP|se20-10	cytoskeleton associated protein 2	protein-coding
85399	chr16	50304771	50304930	+	0	NA	intron (NM_001114, intron 11 of 25)	intron (NM_001114, intron 11 of 25)	12234	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
81391	chr16	5095871	5096030	+	0	NA	intron (NM_201598, intron 1 of 6)	intron (NM_201598, intron 1 of 6)	1845	NM_201400	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
203540	chr7	875801	878130	+	0	NA	intron (NM_015949, intron 1 of 8)	CpG	411	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
113041	chr19	8000821	8001080	+	0	NA	intron (NM_001419, intron 1 of 5)	intron (NM_001419, intron 1 of 5)	4691	NM_001419	1994		NM_001419	ENSG00000066044	ELAVL1	ELAV1|HUR|Hua|MelG	ELAV like RNA binding protein 1	protein-coding
38533	chr11	45901121	45901380	+	0	NA	intron (NM_005456, intron 3 of 11)	intron (NM_005456, intron 3 of 11)	6021	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
47559	chr12	4297521	4297980	+	0	NA	intron (NM_001759, intron 4 of 4)	intron (NM_001759, intron 4 of 4)	-21566	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
84516	chr16	30513721	30513980	+	0	NA	intron (NM_002209, intron 25 of 30)	intron (NM_002209, intron 25 of 30)	9931	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
163799	chr3	52403471	52404680	+	0	NA	intron (NM_004656, intron 12 of 16)	intron (NM_004656, intron 12 of 16)	5933	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
49946	chr12	40103001	40103200	+	0	NA	intron (NM_052885, intron 1 of 9)	intron (NM_052885, intron 1 of 9)	2981	NM_052885	114134		NM_052885	ENSG00000151229	SLC2A13	HMIT	solute carrier family 2 member 13	protein-coding
191124	chr6	4047921	4048480	+	0	NA	intron (NR_146785, intron 7 of 20)	AluY|SINE|Alu	26900	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
173397	chr4	7981771	7982130	+	0	NA	intron (NM_001286688, intron 14 of 14)	intron (NM_001286688, intron 14 of 14)	23431	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
74441	chr15	59420051	59420350	+	0	NA	Intergenic	Intergenic	-17986	NM_152450	145773		NM_152450	ENSG00000157470	FAM81A	-	family with sequence similarity 81 member A	protein-coding
71476	chr14	105940921	105941480	+	0	NA	Intergenic	Intergenic	23221	NR_026800	9834		NM_014151	ENSG00000226777	FAM30A	C14orf110|HSPC053|KIAA0125	family with sequence similarity 30 member A	ncRNA
131718	chr2	97957871	97958230	+	0	NA	intron (NM_015348, intron 1 of 40)	L2c|LINE|L2	37898	NM_015348	23505		NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
116165	chr19	17401551	17401650	+	0	NA	Intergenic	Intergenic	4030	NM_004335	684		NM_004335	ENSG00000130303	BST2	CD317|HM1.24|TETHERIN	bone marrow stromal cell antigen 2	protein-coding
178938	chr4	158927821	158928280	+	0	NA	intron (NM_152543, intron 3 of 4)	LTR12C|LTR|ERV1	107179	NM_152543	152940		NM_152543	ENSG00000164123	SPMIP2	C4orf45	sperm microtubule inner protein 2	protein-coding
123400	chr19	53961401	53962000	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-1237	NM_031895	59283		NM_031895	ENSG00000142408	CACNG8	-	calcium voltage-gated channel auxiliary subunit gamma 8	protein-coding
89293	chr16	88703201	88704300	+	0	NA	promoter-TSS (NM_001171816)	promoter-TSS (NM_001171816)	-169	NM_001171816	115992		NM_178841	ENSG00000158717	RNF166	-	ring finger protein 166	protein-coding
17883	chr1	160076751	160077050	+	0	NA	Intergenic	AluSx|SINE|Alu	-4638	NM_004983	3765		NM_004983	ENSG00000162728	KCNJ9	GIRK3|KIR3.3	potassium inwardly rectifying channel subfamily J member 9	protein-coding
206798	chr7	36809151	36809250	+	0	NA	Intergenic	MER89|LTR|ERV1	-84651	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
50997	chr12	49645501	49645830	+	0	NA	TTS (NM_012272)	TTS (NM_012272)	22104	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
189395	chr5	172755701	172756100	+	0	NA	intron (NR_161233, intron 1 of 3)	MSTB|LTR|ERVL-MaLR	397	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
171377	chr3	196111851	196112500	+	0	NA	Intergenic	Intergenic	-30085	NM_001313966	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
188604	chr5	157188271	157188850	+	0	NA	intron (NM_005546, intron 1 of 16)	MER96|DNA|hAT-Tip100	7720	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
179228	chr4	173924651	173924750	+	0	NA	intron (NR_146487, intron 1 of 2)	intron (NR_146487, intron 1 of 2)	27427	NR_146487	101928478		NR_146487	ENSG00000250708	LINC02269	-	long intergenic non-protein coding RNA 2269	ncRNA
152630	chr22	21448151	21448250	+	0	NA	3' UTR (NM_015094, exon 3 of 3)	3' UTR (NM_015094, exon 3 of 3)	-18970	NM_001207052	645426		NM_001207052	ENSG00000206140	TMEM191C	-	transmembrane protein 191C	protein-coding
127221	chr2	38600401	38600930	+	0	NA	intron (NM_138394, intron 1 of 12)	AluJb|SINE|Alu	2263	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
5041	chr1	24530301	24530500	+	0	NA	intron (NM_001251985, intron 1 of 1)	L1ME3F|LINE|L1	16086	NM_001251982	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
63424	chr13	114095101	114095300	+	0	NA	intron (NM_001320821, intron 1 of 25).2	L1MC5|LINE|L1	-17245	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
111433	chr19	3803071	3803230	+	0	NA	TTS (NM_015174)	TTS (NM_015174)	-1351	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
16529	chr1	154943671	154944950	+	0	NA	3' UTR (NM_020524, exon 11 of 11)	3' UTR (NM_020524, exon 11 of 11)	-1652	NM_001323012	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
86574	chr16	67230971	67231130	+	0	NA	intron (NM_001318202, intron 19 of 23)	L2b|LINE|L2	3920	NM_014187	29100		NM_014187	ENSG00000168701	TMEM208	HSPC171|SND2|hSND2	transmembrane protein 208	protein-coding
65945	chr14	55584271	55584430	+	0	NA	intron (NM_001079521, intron 1 of 43)	L2a|LINE|L2	4143	NM_004986	3895		NM_004986	ENSG00000126777	KTN1	CG1|KNT|MU-RMS-40.19	kinectin 1	protein-coding
161779	chr3	44992501	44992850	+	0	NA	intron (NM_015004, intron 3 of 7)	intron (NM_015004, intron 3 of 7)	16426	NR_023353	23016		NM_015004	ENSG00000075914	EXOSC7	EAP1|RRP42|Rrp42p|hRrp42p|p8	exosome component 7	protein-coding
225756	chr9	37197371	37197730	+	0	NA	intron (NM_001289119, intron 2 of 8)	intron (NM_001289119, intron 2 of 8)	76952	NM_001289120	84186		NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding
139139	chr2	219009671	219010550	+	0	NA	intron (NM_194302, intron 26 of 34)	intron (NM_194302, intron 26 of 34)	7895	NR_046086	100129175		NR_046086	ENSG00000224090	LOC100129175	-	uncharacterized LOC100129175	ncRNA
209137	chr7	75094151	75094250	+	0	NA	5' UTR (NM_001368302, exon 1 of 16)	5' UTR (NM_001368302, exon 1 of 16)	168	NM_001368302	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
173891	chr4	24580701	24581530	+	0	NA	intron (NM_001358, intron 1 of 13)	AluY|SINE|Alu	3439	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
191670	chr6	13448051	13448580	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	23748	NR_038459	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
24184	chr1	235892121	235892400	+	0	NA	Intergenic	Intergenic	-8547	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
155949	chr22	39686951	39687450	+	0	NA	3' UTR (NM_021096, exon 37 of 37)	3' UTR (NM_021096, exon 37 of 37)	116447	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
119422	chr19	40283501	40283780	+	0	NA	promoter-TSS (NR_030371)	promoter-TSS (NR_030371)	-999	NR_030371	693226		NR_030371	ENSG00000207631	MIR641	MIRN641|hsa-mir-641|mir-641	microRNA 641	ncRNA
184014	chr5	91266101	91266730	+	0	NA	Intergenic	Intergenic	47987	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
188954	chr5	160504771	160505330	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	19698	NR_029701	406938		NR_029701	ENSG00000283733	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
109705	chr19	1060201	1060400	+	0	NA	intron (NM_019112, intron 40 of 46)	AluSz|SINE|Alu	-5659	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
85197	chr16	46970951	46971050	+	0	NA	intron (NM_005880, intron 3 of 8)	AluSp|SINE|Alu	2674	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
182885	chr5	70028451	70029280	+	0	NA	intron (NM_022978, intron 2 of 2).5	AluYc|SINE|Alu	3614	NM_021967	8293		NM_021967	ENSG00000172058	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A	protein-coding
143062	chr20	21511901	21512500	+	0	NA	exon (NM_002509, exon 2 of 2)	exon (NM_002509, exon 2 of 2)	1864	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
142631	chr20	5646471	5647030	+	0	NA	Intergenic	AluJb|SINE|Alu	-35744	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
79637	chr16	1157401	1157800	+	0	NA	intron (NM_021098, intron 2 of 34)	CpG	4359	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
54097	chr12	76082751	76083300	+	0	NA	intron (NM_139207, intron 1 of 15)	intron (NM_139207, intron 1 of 15)	1660	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
17721	chr1	158932201	158932950	+	0	NA	intron (NM_152501, intron 1 of 8)	intron (NM_152501, intron 1 of 8)	1023	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
107608	chr18	48921571	48922000	+	0	NA	exon (NM_001190823, exon 2 of 2)	exon (NM_001190823, exon 2 of 2)	21022	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
73001	chr15	40682771	40683230	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	12105	NR_040058	100505648		NR_040058	ENSG00000245849	RAD51-AS1	TODRA	RAD51 antisense RNA 1	ncRNA
97947	chr17	45223601	45224360	+	0	NA	intron (NM_005892, intron 1 of 26)	Tigger19a|DNA|TcMar-Tigger	2095	NM_005892	752		NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin like 1	protein-coding
168677	chr3	150585101	150585300	+	0	NA	3' UTR (NM_032025, exon 14 of 14)	3' UTR (NM_032025, exon 14 of 14)	-18121	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
91894	chr17	7286301	7286500	+	0	NA	intron (NM_001042, intron 10 of 10)	intron (NM_001042, intron 10 of 10)	4682	NM_001042	6517		NM_001042	ENSG00000181856	SLC2A4	GLUT4	solute carrier family 2 member 4	protein-coding
18542	chr1	162392171	162392330	+	0	NA	Intergenic	Intergenic	10522	NM_001085375	400793		NM_001085375	ENSG00000239887	C1orf226	-	chromosome 1 open reading frame 226	protein-coding
215119	chr7	155346471	155346830	+	0	NA	Intergenic	Intergenic	21283	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
188703	chr5	157305471	157305830	+	0	NA	intron (NM_014376, intron 8 of 30)	AluJr|SINE|Alu	36326	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
136495	chr2	177232151	177232250	+	0	NA	intron (NM_001313900, intron 4 of 4)	intron (NM_001313900, intron 4 of 4)	19406	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
141198	chr2	239323571	239323930	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	18288	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
40386	chr11	64005101	64005300	+	0	NA	intron (NM_014067, intron 4 of 10)	AluSg|SINE|Alu	19347	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
128526	chr2	60755701	60757280	+	0	NA	exon (NM_022894, exon 1 of 22)	exon (NM_022894, exon 1 of 22)	222	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
133326	chr2	113897551	113898450	+	0	NA	intron (NM_001277140, intron 1 of 11)	intron (NM_001277140, intron 1 of 11)	-7008	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
185788	chr5	132414701	132414900	+	0	NA	intron (NR_161242, intron 1 of 3)	MER84|LTR|ERV1	3871	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
237890	chrX	131711001	131711250	+	0	NA	intron (NR_026975, intron 11 of 12)	intron (NR_026975, intron 11 of 12)	119518	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
107958	chr18	58310471	58310900	+	0	NA	intron (NM_001243960, intron 5 of 28)	intron (NM_001243960, intron 5 of 28)	89114	NM_001144966	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
88666	chr16	85661251	85661350	+	0	NA	exon (NM_014615, exon 9 of 16)	exon (NM_014615, exon 9 of 16)	27654	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
10785	chr1	77497051	77497350	+	0	NA	intron (NM_174858, intron 10 of 13)	LTR12|LTR|ERV1	185458	NM_001376155	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
32353	chr10	102375201	102375650	+	0	NA	exon (NM_001377140, exon 28 of 38)	exon (NM_001377140, exon 28 of 38)	-18685	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
33833	chr10	124064421	124065230	+	0	NA	intron (NM_001270764, intron 1 of 7)	L2b|LINE|L2	27581	NM_014863	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
46271	chr11	124799301	124800960	+	0	NA	promoter-TSS (NR_103862)	promoter-TSS (NR_103862)	276	NM_024631	79684		NM_024631	ENSG00000120458	MSANTD2	C11orf61	Myb/SANT DNA binding domain containing 2	protein-coding
140705	chr2	234322951	234323650	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	131295	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
75553	chr15	66911271	66911430	+	0	NA	Intergenic	Intergenic	45165	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
200973	chr6	139326521	139326780	+	0	NA	Intergenic	MER39|LTR|ERV1	-34652	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
231394	chr9	130833421	130833680	+	0	NA	intron (NM_007313, intron 1 of 10)	intron (NM_007313, intron 1 of 10)	-1704	NM_005157	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
36699	chr11	8813721	8814200	+	0	NA	intron (NR_164822, intron 2 of 22)	intron (NR_164822, intron 2 of 22)	-3286	NR_164819	6764		NM_005418	ENSG00000166444	DENND2B	HTS1|ST5|p126	DENN domain containing 2B	protein-coding
194271	chr6	32609371	32610680	+	0	NA	Intergenic	Intergenic	-20189	NM_001243965	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
239408	chrY	25967121	25967200	+	0	NA	Intergenic	L1M4|LINE|L1	238670	NR_002176	474148		NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis expressed transcript, Y-linked 3B	ncRNA
108393	chr18	69885601	69886500	+	0	NA	intron (NM_006566, intron 4 of 6)	intron (NM_006566, intron 4 of 6)	61823	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
18054	chr1	160628871	160630750	+	0	NA	intron (NR_104401, intron 3 of 5)	MLT1J|LTR|ERVL-MaLR	17234	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
122141	chr19	48863321	48863580	+	0	NA	intron (NM_020904, intron 3 of 19)	AluY|SINE|Alu	5167	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
108142	chr18	62526161	62527430	+	0	NA	intron (NM_017742, intron 1 of 13)	CpG	3770	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
1780	chr1	6052301	6053100	+	0	NA	intron (NM_001199862, intron 2 of 15)	intron (NM_001199862, intron 2 of 15)	6812	NM_001199863	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
199963	chr6	127952671	127953230	+	0	NA	Intergenic	LTR33B|LTR|ERVL	-34319	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
43310	chr11	76231901	76232880	+	0	NA	Intergenic	Intergenic	-25888	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
212793	chr7	130151551	130153130	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	10609	NR_149034	100128325		NR_149033	ENSG00000229196	LINC03008	-	long intergenic non-protein coding RNA 3008	ncRNA
31436	chr10	95819651	95819950	+	0	NA	intron (NM_001312654, intron 2 of 9)	intron (NM_001312654, intron 2 of 9)	63637	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
85029	chr16	31704921	31706050	+	0	NA	intron (NR_024034, intron 6 of 8)	intron (NR_024034, intron 6 of 8)	4872	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
81021	chr16	4255371	4255700	+	0	NA	Intergenic	L1MB5|LINE|L1	-1746	NR_039999	100507501		NR_039999		LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA
15074	chr1	148459801	148461600	+	0	NA	promoter-TSS (NR_027468)	promoter-TSS (NR_027468)	-780	NR_027468	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
51461	chr12	52055791	52056830	+	0	NA	intron (NM_173157, intron 3 of 6)	intron (NM_173157, intron 3 of 6)	4868	NM_173157	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
55469	chr12	104684371	104684930	+	0	NA	intron (NM_018413, intron 2 of 2)	AluSz|SINE|Alu	93017	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
166980	chr3	125720201	125720430	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-54399	NR_153417	105374312		NR_153417	ENSG00000272840	LOC105374312	-	uncharacterized LOC105374312	ncRNA
78573	chr15	93026471	93027150	+	0	NA	3' UTR (NM_001271, exon 39 of 39)	3' UTR (NM_001271, exon 39 of 39)	46346	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
141166	chr2	239264121	239266000	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-40402	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
108099	chr18	61948871	61949380	+	0	NA	Intergenic	Intergenic	-56118	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
57912	chr12	123479551	123479650	+	0	NA	intron (NM_001319243, intron 6 of 7)	intron (NM_001319243, intron 6 of 7)	19896	NM_180699	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
238097	chrX	136586051	136586980	+	0	NA	Intergenic	Intergenic	35637	NR_030631	100126324		NR_030631	ENSG00000216060	MIR934	MIRN934|hsa-mir-934|mir-934	microRNA 934	ncRNA
142709	chr20	8389451	8389780	+	0	NA	intron (NM_015192, intron 3 of 31)	intron (NM_015192, intron 3 of 31)	140911	NR_046809	100874337		NR_046809	ENSG00000225479	PLCB1-IT1	-	PLCB1 intronic transcript 1	ncRNA
224482	chr9	16267471	16267630	+	0	NA	intron (NM_001364979, intron 1 of 3)	intron (NM_001364979, intron 1 of 3)	8763	NM_001364979	100129385		NM_001271829	ENSG00000205549	LINC03041	C9orf92|Em:AL513424.1	long intergenic non-protein coding RNA 3041	ncRNA
155588	chr22	38754821	38757750	+	0	NA	promoter-TSS (NM_015374)	promoter-TSS (NM_015374)	-287	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
51800	chr12	53385921	53386180	+	0	NA	intron (NM_138473, intron 3 of 5)	intron (NM_138473, intron 3 of 5)	5406	NM_003109	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
149372	chr21	29449351	29450130	+	0	NA	Intergenic	Intergenic	-46307	NR_146594	54147		NR_146594	ENSG00000234293	BACH1-IT3	C21orf8|NCRNA00097	BACH1 intronic transcript 3	ncRNA
158503	chr3	3109401	3110980	+	0	NA	5' UTR (NM_000564, exon 1 of 13)	5' UTR (NM_000564, exon 1 of 13)	184	NM_001243099	3568		NM_000564	ENSG00000091181	IL5RA	CD125|CDw125|HSIL5R3|IL5R	interleukin 5 receptor subunit alpha	protein-coding
26761	chr10	22714001	22715680	+	0	NA	promoter-TSS (NM_005028)	promoter-TSS (NM_005028)	-262	NM_005028	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
171520	chr3	196646271	196646630	+	0	NA	intron (NM_198565, intron 1 of 2)	intron (NM_198565, intron 1 of 2)	6756	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
234872	chrX	27863851	27864000	+	0	NA	Intergenic	CpG	55935	NM_182506	139422		NM_182506	ENSG00000177689	MAGEB10	-	MAGE family member B10	protein-coding
77898	chr15	89136801	89137200	+	0	NA	intron (NM_152924, intron 3 of 10)	intron (NM_152924, intron 3 of 10)	48544	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
138294	chr2	203716671	203717100	+	0	NA	intron (NM_001243078, intron 1 of 2)	AluJo|SINE|Alu	10246	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
144552	chr20	35731501	35732580	+	0	NA	non-coding (NR_040724, exon 5 of 18)	non-coding (NR_040724, exon 5 of 18)	10220	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
201293	chr6	144334101	144334800	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	42713	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
90501	chr17	1453301	1454150	+	0	NA	intron (NM_016823, intron 1 of 2)	AluSq2|SINE|Alu	2507	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
206766	chr7	36707021	36707280	+	0	NA	intron (NM_001177506, intron 1 of 21)	Tigger1|DNA|TcMar-Tigger	17344	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
121459	chr19	47046151	47046550	+	0	NA	TTS (NM_001321086)	TTS (NM_001321086)	2274	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
178074	chr4	140097151	140097250	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-30815	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
193979	chr6	31731121	31731380	+	0	NA	promoter-TSS (NM_013974).2	promoter-TSS (NM_013974).2	-987	NM_013974	23564		NM_013974	ENSG00000213722	DDAH2	DDAH|DDAHII|G6a|HEL-S-277|NG30	DDAH family member 2, ADMA-independent	protein-coding
184387	chr5	98864051	98864550	+	0	NA	intron (NR_157078, intron 32 of 36)	intron (NR_157078, intron 32 of 36)	-64262	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
212694	chr7	129769721	129769980	+	0	NA	TTS (NR_029614)	TTS (NR_029614)	642	NR_029614	406958		NR_029614	ENSG00000207990	MIR182	MIRN182|miRNA182|mir-182	microRNA 182	ncRNA
962	chr1	1776671	1777250	+	0	NA	intron (NM_001353641, intron 1 of 11)	AluJr4|SINE|Alu	1510	NM_023018	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
32634	chr10	103685971	103687330	+	0	NA	intron (NM_014631, intron 6 of 13)	MIRb|SINE|MIR	-8435	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
27738	chr10	35130551	35131080	+	0	NA	intron (NM_183060, intron 1 of 5)	Tigger3c|DNA|TcMar-Tigger	3358	NM_183060	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
196917	chr6	52386551	52387050	+	0	NA	intron (NM_133367, intron 1 of 1)	L1PA16|LINE|L1	24649	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
4286	chr1	19799251	19801130	+	0	NA	promoter-TSS (NM_181719)	promoter-TSS (NM_181719)	-274	NM_001349114	255104		NM_181719	ENSG00000162542	TMCO4	-	transmembrane and coiled-coil domains 4	protein-coding
190246	chr5	178624751	178624850	+	0	NA	intron (NM_020666, intron 1 of 12)	intron (NM_020666, intron 1 of 12)	2250	NM_020666	57396		NM_020666	ENSG00000113240	CLK4	-	CDC like kinase 4	protein-coding
98210	chr17	46136971	46137150	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	55722	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
180889	chr5	34007271	34008630	+	0	NA	promoter-TSS (NM_203382)	promoter-TSS (NM_203382)	100	NM_203382	23600		NM_014324	ENSG00000242110	AMACR	AMACRD|CBAS4|P504S|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
27569	chr10	32361801	32362330	+	0	NA	intron (NR_104163, intron 1 of 1)	MER41A|LTR|ERV1	14701	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
220647	chr8	101081771	101082150	+	0	NA	Intergenic	Intergenic	29906	NR_033962	441374		NR_033962	ENSG00000248599	SLEAR	-	STAT1 regulated ILF2 complex interacting lncRNA	ncRNA
77191	chr15	80694501	80696130	+	0	NA	promoter-TSS (NM_021214)	promoter-TSS (NM_021214)	5	NM_021214	58489		NM_021214	ENSG00000136379	ABHD17C	FAM108C1	abhydrolase domain containing 17C, depalmitoylase	protein-coding
176732	chr4	101336771	101336930	+	0	NA	intron (NM_001130692, intron 1 of 11)	L3|LINE|CR1	-6436	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
222991	chr8	143264771	143265080	+	0	NA	Intergenic	Intergenic	-2520	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
208992	chr7	74236451	74237030	+	0	NA	intron (NM_002914, intron 8 of 9)	intron (NM_002914, intron 8 of 9)	17659	NM_181471	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
54129	chr12	76518571	76519030	+	0	NA	intron (NM_001003712, intron 1 of 22)	MSTB-int|LTR|ERVL-MaLR	40971	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
25845	chr10	11228721	11229200	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	63930	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
100372	chr17	60114621	60114880	+	0	NA	Intergenic	Intergenic	-11831	NR_027408	653653		NR_027408	ENSG00000293358	LOC653653	-	adaptor related protein complex 1 subunit sigma 2 pseudogene	pseudo
204464	chr7	4683721	4685530	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	2330	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
198461	chr6	106162901	106163900	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	64459	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
70435	chr14	102042321	102042580	+	0	NA	exon (NM_001376, exon 68 of 78)	exon (NM_001376, exon 68 of 78)	44594	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
55593	chr12	106736471	106736830	+	0	NA	intron (NM_213594, intron 15 of 17)	MLT1J2|LTR|ERVL-MaLR	-38032	NM_001351363	55188		NM_018157	ENSG00000111785	RIC8B	RIC8|hSyn	RIC8 guanine nucleotide exchange factor B	protein-coding
168699	chr3	150626121	150626380	+	0	NA	intron (NM_016275, intron 4 of 5)	intron (NM_016275, intron 4 of 5)	22929	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
169216	chr3	157088551	157090130	+	0	NA	promoter-TSS (NR_034008)	promoter-TSS (NR_034008)	-541	NR_034008	100498859		NR_034008		LINC00881	LIPTER	long intergenic non-protein coding RNA 881	ncRNA
97538	chr17	44062951	44063250	+	0	NA	intron (NM_001369486, intron 1 of 3)	intron (NM_001369486, intron 1 of 3)	3571	NM_001369484	124801		NM_152344	ENSG00000161654	LSM12	PNAS-135	LSM12 homolog	protein-coding
87315	chr16	70201551	70201650	+	0	NA	Intergenic	Intergenic	13278	NR_135173	105371328		NR_135173		LOC105371328	-	uncharacterized LOC105371328	ncRNA
107870	chr18	55322321	55322580	+	0	NA	promoter-TSS (NM_001348214)	promoter-TSS (NM_001348214)	-609	NM_001243234	6925		NM_003199	ENSG00000196628	TCF4	CDG2T|E2-2|FCD2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
133415	chr2	118856771	118857200	+	0	NA	Intergenic	CpG	-9337	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
206475	chr7	33040701	33041850	+	0	NA	promoter-TSS (NM_016489)	promoter-TSS (NM_016489)	-369	NM_001166118	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
107345	chr18	45839271	45840000	+	0	NA	intron (NM_213602, intron 4 of 5)	intron (NM_213602, intron 4 of 5)	13960	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
20701	chr1	200640171	200640330	+	0	NA	TTS (NM_001349802)	TTS (NM_001349802)	-19499	NM_014875	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
226584	chr9	73079251	73079600	+	0	NA	Intergenic	L1MEd|LINE|L1	-72440	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
14759	chr1	146019371	146020330	+	0	NA	intron (NM_202004, intron 1 of 2)	intron (NM_202004, intron 1 of 2)	1885	NM_213652	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
12682	chr1	109465951	109467900	+	0	NA	intron (NM_001040709, intron 1 of 5)	CpG	379	NM_001040709	284612		NM_198280	ENSG00000143028	SYPL2	MG29	synaptophysin like 2	protein-coding
30093	chr10	73932151	73932850	+	0	NA	Intergenic	Intergenic	-9723	NR_160938	414236		NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 putative open reading frame 55	ncRNA
126928	chr2	33208471	33208630	+	0	NA	intron (NM_001166265, intron 3 of 29)	intron (NM_001166265, intron 3 of 29)	73954	NM_001166264	4052		NM_000627	ENSG00000049323	LTBP1	ARCL2E	latent transforming growth factor beta binding protein 1	protein-coding
218321	chr8	42740851	42741780	+	0	NA	Intergenic	Intergenic	27471	NM_004198	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
36391	chr11	4036501	4036700	+	0	NA	intron (NM_001382570, intron 3 of 9)	L1PA11|LINE|L1	-58085	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
64253	chr14	23177371	23177530	+	0	NA	intron (NM_012244, intron 1 of 10)	MER57B2|LTR|ERV1	6210	NM_012244	23428		NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
74057	chr15	52545971	52546630	+	0	NA	TTS (NM_001306195)	TTS (NM_001306195)	-17250	NM_000259	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
223573	chr8	144268721	144269350	+	0	NA	TTS (NM_001080514)	TTS (NM_001080514)	2582	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
238373	chrX	149933951	149934050	+	0	NA	intron (NM_001013845, intron 3 of 4)	intron (NM_001013845, intron 3 of 4)	4427	NM_001351114	101927685		NM_001351114	ENSG00000283463	HSFX4	-	heat shock transcription factor family, X-linked member 4	protein-coding
96292	chr17	39943871	39944030	+	0	NA	exon (NM_001195545, exon 2 of 2)	exon (NM_001195545, exon 2 of 2)	2476	NM_001195545	100505591		NM_001195545	ENSG00000204913	LRRC3C	-	leucine rich repeat containing 3C	protein-coding
198790	chr6	108914201	108914800	+	0	NA	intron (NM_001286609, intron 9 of 16)	intron (NM_001286609, intron 9 of 16)	9603	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
101374	chr17	67258751	67259750	+	0	NA	intron (NR_136398, intron 2 of 3)	intron (NR_136398, intron 2 of 3)	-14054	NM_001330447	9931		NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
130993	chr2	87781751	87783230	+	0	NA	exon (NM_001078170, exon 20 of 23)	exon (NM_001078170, exon 20 of 23)	34397	NM_001032392	5343		NM_001032392	ENSG00000183281	PLGLB1	PLGL|PLGP1|PRGB|PRP-B	plasminogen like B1	protein-coding
133688	chr2	127104321	127104780	+	0	NA	intron (NM_139345, intron 1 of 15)	intron (NM_139345, intron 1 of 15)	2604	NM_001320641	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
97769	chr17	44511701	44512100	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-8494	NM_001304939	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
53914	chr12	71658321	71658580	+	0	NA	intron (NM_144982, intron 1 of 34)	AluSx|SINE|Alu	5398	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
7946	chr1	37550801	37551500	+	0	NA	intron (NM_024700, intron 2 of 3)	L1MD1|LINE|L1	3143	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
6092	chr1	27284471	27285250	+	0	NA	intron (NM_015023, intron 5 of 15)	intron (NM_015023, intron 5 of 15)	-37285	NM_032125	84065		NM_032125	ENSG00000186501	TMEM222	C1orf160|NEDMOSBA	transmembrane protein 222	protein-coding
203718	chr7	1067371	1067630	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	12130	NM_001303474	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
106251	chr18	12227001	12227200	+	0	NA	Intergenic	L1MC5|LINE|L1	26321	NR_049896	497259		NR_049896		C18orf61	-	uncharacterized LOC497259	ncRNA
117459	chr19	19689901	19690800	+	0	NA	Intergenic	AluSp|SINE|Alu	21511	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
229680	chr9	124536721	124537000	+	0	NA	intron (NM_001278546, intron 6 of 9)	intron (NM_001278546, intron 6 of 9)	-29461	NM_004959	2516		NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1	nuclear receptor subfamily 5 group A member 1	protein-coding
230143	chr9	127739601	127741250	+	0	NA	intron (NM_170600, intron 9 of 11)	intron (NM_170600, intron 9 of 11)	-5131	NM_001134430	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
171399	chr3	196194721	196194980	+	0	NA	Intergenic	Intergenic	16550	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
144756	chr20	36608071	36608580	+	0	NA	intron (NR_164350, intron 3 of 3)	AluJb|SINE|Alu	2546	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
136778	chr2	181462871	181463050	+	0	NA	intron (NM_000885, intron 2 of 27)	L2b|LINE|L2	5574	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
206562	chr7	35655751	35656250	+	0	NA	intron (NM_022373, intron 5 of 8)	AluSq|SINE|Alu	39135	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
129186	chr2	68185641	68185980	+	0	NA	intron (NM_000945, intron 5 of 5)	intron (NM_000945, intron 5 of 5)	27922	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
19165	chr1	171779701	171779900	+	0	NA	Intergenic	AluSz|SINE|Alu	-1860	NM_001007239	51603		NM_014955	ENSG00000010165	METTL13	5630401D24Rik|CGI-01|DFNB26|DFNB26M|DFNM1|EEF1AKNMT|KIAA0859|feat	methyltransferase 13, eEF1A N-terminus and K55	protein-coding
192484	chr6	24951651	24953200	+	0	NA	intron (NM_001286446, intron 1 of 13)	MER63B|DNA|hAT-Blackjack	-16465	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
195813	chr6	41192971	41193600	+	0	NA	intron (NM_024807, intron 3 of 4)	LTR16C|LTR|ERVL	7864	NM_024807	79865		NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
4553	chr1	22041401	22041600	+	0	NA	Intergenic	L1ME3A|LINE|L1	-11209	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
13211	chr1	112642171	112642480	+	0	NA	intron (NM_006135, intron 1 of 9)	AluSg4|SINE|Alu	22493	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
209028	chr7	74457801	74458400	+	0	NA	intron (NM_001199207, intron 1 of 26)	AluSz|SINE|Alu	4194	NM_005685	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
161797	chr3	45210251	45210870	+	0	NA	Intergenic	Intergenic	15727	NM_015444	25907		NM_015444	ENSG00000249992	TMEM158	BBP|RIS1|p40BBP	transmembrane protein 158	protein-coding
143236	chr20	24992151	24993280	+	0	NA	promoter-TSS (NM_020531)	promoter-TSS (NM_020531)	36	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
119907	chr19	41592121	41592380	+	0	NA	Intergenic	Intergenic	16084	NM_001098506	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
131540	chr2	96692671	96692930	+	0	NA	intron (NM_001293083, intron 31 of 52)	intron (NM_001293083, intron 31 of 52)	47264	NM_030805	81562		NM_030805	ENSG00000114988	LMAN2L	MRD69|MRT52|VIPL	lectin, mannose binding 2 like	protein-coding
176811	chr4	102536671	102536830	+	0	NA	intron (NM_001382625, intron 5 of 24)	intron (NM_001382625, intron 5 of 24)	-34264	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
229569	chr9	123267351	123267650	+	0	NA	intron (NM_018387, intron 1 of 18)	intron (NM_018387, intron 1 of 18)	1086	NR_033234	55342		NM_018387	ENSG00000165209	STRBP	HEL162|ILF3L|SPNR|p74	spermatid perinuclear RNA binding protein	protein-coding
34822	chr11	294271	294430	+	0	NA	exon (NM_025092, exon 13 of 14)	exon (NM_025092, exon 13 of 14)	5176	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
1013	chr1	1857871	1858030	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	33137	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
34993	chr11	519851	520280	+	0	NA	Intergenic	CpG	-12823	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
96561	chr17	40442921	40444050	+	0	NA	promoter-TSS (NM_001552)	promoter-TSS (NM_001552)	35	NM_001552	3487		NM_001552	ENSG00000141753	IGFBP4	BP-4|HT29-IGFBP|IBP4|IGFBP-4	insulin like growth factor binding protein 4	protein-coding
176536	chr4	98198751	98198850	+	0	NA	Intergenic	Intergenic	-55324	NM_174952	285555		NM_174952	ENSG00000163116	STPG2	C4orf37	sperm tail PG-rich repeat containing 2	protein-coding
26296	chr10	14961221	14961480	+	0	NA	intron (NR_147060, intron 1 of 2)	MER47A|DNA|TcMar-Tigger	1962	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
70957	chr14	104686601	104687380	+	0	NA	Intergenic	Intergenic	-2616	NM_032714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
19190	chr1	172338421	172338680	+	0	NA	intron (NM_015569, intron 17 of 20)	intron (NM_015569, intron 17 of 20)	-82135	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
187937	chr5	149035301	149035780	+	0	NA	intron (NM_024577, intron 8 of 16)	intron (NM_024577, intron 8 of 16)	26869	NR_030310	693169		NR_030310	ENSG00000207714	MIR584	MIRN584|hsa-mir-584	microRNA 584	ncRNA
191808	chr6	14454321	14454780	+	0	NA	Intergenic	Intergenic	-169096	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
146454	chr20	49694521	49695200	+	0	NA	intron (NM_004776, intron 1 of 8)	Tigger9b|DNA|TcMar-Tigger	19018	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
119657	chr19	40824751	40825350	+	0	NA	Intergenic	Intergenic	-13950	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
6402	chr1	27959251	27961350	+	0	NA	exon (NM_018053, exon 1 of 3)	exon (NM_018053, exon 1 of 3)	327	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
27493	chr10	32255771	32255930	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	91308	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
127433	chr2	42163801	42164000	+	0	NA	intron (NR_110584, intron 1 of 3)	intron (NR_110584, intron 1 of 3)	-5453	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
71534	chr14	106200321	106201100	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-86964	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
154458	chr22	35437151	35437250	+	0	NA	Intergenic	Intergenic	37060	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
131273	chr2	96090121	96090380	+	0	NA	Intergenic	Intergenic	26321	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
208274	chr7	65798371	65798930	+	0	NA	Intergenic	Intergenic	-27840	NR_038378	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
104892	chr17	81887501	81888050	+	0	NA	TTS (NM_005782)	TTS (NM_005782)	-3015	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
139248	chr2	219384851	219384950	+	0	NA	intron (NR_134970, intron 6 of 12)	intron (NR_134970, intron 6 of 12)	2462	NM_001319118	23549		NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
93245	chr17	17919151	17919480	+	0	NA	intron (NM_001082968, intron 1 of 14)	intron (NM_001082968, intron 1 of 14)	53085	NM_001082968	146691		NM_144678	ENSG00000175662	TOM1L2	-	target of myb1 like 2 membrane trafficking protein	protein-coding
67422	chr14	70416551	70417280	+	0	NA	exon (NM_001202547, exon 1 of 6)	exon (NM_001202547, exon 1 of 6)	175	NM_001202548	100529257		NM_001202547	ENSG00000258644	SYNJ2BP-COX16	-	SYNJ2BP-COX16 readthrough	protein-coding
171093	chr3	195496071	195496630	+	0	NA	Intergenic	Intergenic	46975	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
125261	chr2	10436171	10436430	+	0	NA	Intergenic	MIR3|SINE|MIR	10549	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
225552	chr9	35845851	35845950	+	0	NA	intron (NM_016446, intron 7 of 10)	intron (NM_016446, intron 7 of 10)	16672	NM_001042590	51754		NM_016446	ENSG00000137103	TMEM8B	C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6|NGX6a	transmembrane protein 8B	protein-coding
193997	chr6	31776671	31778000	+	0	NA	promoter-TSS (NM_025258).6	promoter-TSS (NM_025258).6	-7	NM_025258	80737		NM_025258	ENSG00000204396	VWA7	C6orf27|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding
57151	chr12	121254501	121254900	+	0	NA	intron (NM_172215, intron 9 of 15)	MIRb|SINE|MIR	19885	NM_001270486	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
111221	chr19	3502021	3502280	+	0	NA	Intergenic	Intergenic	-1476	NM_001145165	83475		NM_031304	ENSG00000129932	DOHH	HLRC1|NEDMVIC|hDOHH	deoxyhypusine hydroxylase	protein-coding
92459	chr17	8481121	8481380	+	0	NA	intron (NM_005964, intron 36 of 40)	intron (NM_005964, intron 36 of 40)	45366	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
230392	chr9	128102971	128104200	+	0	NA	intron (NR_049766, intron 4 of 9)	intron (NR_049766, intron 4 of 9)	5103	NR_049766	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
57858	chr12	123297271	123297830	+	0	NA	intron (NM_018183, intron 31 of 31)	intron (NM_018183, intron 31 of 31)	-25310	NR_073007	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
138972	chr2	218275571	218276050	+	0	NA	intron (NM_001321432, intron 11 of 11)	intron (NM_001321432, intron 11 of 11)	4378	NR_106768	102465256		NR_106768	ENSG00000284173	MIR6513	hsa-mir-6513|mir-6513	microRNA 6513	ncRNA
16370	chr1	154350301	154350780	+	0	NA	3' UTR (NM_001370596, exon 28 of 28)	3' UTR (NM_001370596, exon 28 of 28)	21742	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
214126	chr7	144214971	144215130	+	0	NA	intron (NR_126022, intron 2 of 4).3	THE1A-int|LTR|ERVL-MaLR	17793	NM_001001802	402317		NM_001001802	ENSG00000212807	OR2A42	-	olfactory receptor family 2 subfamily A member 42	protein-coding
173346	chr4	7781271	7781630	+	0	NA	exon (NM_001134647, exon 13 of 18)	exon (NM_001134647, exon 13 of 18)	27360	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
18746	chr1	167486151	167486930	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	31989	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
114620	chr19	12977421	12978450	+	0	NA	Intergenic	Intergenic	8317	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
36856	chr11	10382571	10382800	+	0	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	-67636	NM_001172431	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
39878	chr11	62484621	62484880	+	0	NA	intron (NM_024060, intron 5 of 5)	L2a|LINE|L2	60914	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
180253	chr5	1652621	1652950	+	0	NA	Intergenic	Intergenic	-18780	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
2082	chr1	7948721	7949630	+	0	NA	Intergenic	Intergenic	-8336	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
102721	chr17	76190621	76190880	+	0	NA	intron (NM_052916, intron 2 of 18)	AluYc|SINE|Alu	-49505	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
79720	chr16	1320421	1321330	+	0	NA	intron (NM_194259, intron 7 of 7)	intron (NM_194259, intron 7 of 7)	11239	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
128722	chr2	61768021	61768280	+	0	NA	Intergenic	AluSq2|SINE|Alu	85910	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
167008	chr3	126034621	126034980	+	0	NA	intron (NM_001008486, intron 2 of 10)	intron (NM_001008486, intron 2 of 10)	22325	NM_001008487	54946		NM_017836	ENSG00000114544	SLC41A3	SLC41A1-L2	solute carrier family 41 member 3	protein-coding
44409	chr11	103736251	103736550	+	0	NA	Intergenic	Intergenic	-113506	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
108077	chr18	59908221	59908480	+	0	NA	Intergenic	AluSz6|SINE|Alu	8354	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
148255	chr20	63655251	63655750	+	0	NA	Intergenic	Intergenic	-1890	NR_075070	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
223240	chr8	143617001	143618680	+	0	NA	promoter-TSS (NM_001317783)	promoter-TSS (NM_001317783)	-291	NM_001317783	7264		NM_003313	ENSG00000104522	GFUS	FX|P35B|SDR4E1|TSTA3	GDP-L-fucose synthase	protein-coding
238079	chrX	136193771	136193930	+	0	NA	intron (NM_001369330, intron 2 of 6)	intron (NM_001369330, intron 2 of 6)	-2939	NM_001159701	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
235981	chrX	53751371	53751730	+	0	NA	Intergenic	L1MB4|LINE|L1	-64831	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
48345	chr12	9331171	9331850	+	0	NA	Intergenic	L2a|LINE|L2	-35954	NR_120479	101930452		NR_120479	ENSG00000260423	LINC02367	-	long intergenic non-protein coding RNA 2367	ncRNA
40718	chr11	64800851	64801900	+	0	NA	intron (NM_004579, intron 7 of 31)	MIR1_Amn|SINE|MIR	1839	NM_004579	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
145482	chr20	43845001	43845200	+	0	NA	Intergenic	Intergenic	-49618	NR_134577	105372626		NR_134577	ENSG00000233277	LINC01728	-	long intergenic non-protein coding RNA 1728	ncRNA
41016	chr11	65430701	65432150	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	8627	NR_131012	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
39171	chr11	57349171	57349330	+	0	NA	intron (NM_002559, intron 6 of 11)	AluSx3|SINE|Alu	10898	NM_002559	5024		NM_002559	ENSG00000109991	P2RX3	P2X3	purinergic receptor P2X 3	protein-coding
179110	chr4	168711851	168711950	+	0	NA	exon (NM_016081, exon 10 of 21)	exon (NM_016081, exon 10 of 21)	80322	NM_001166109	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
73363	chr15	42471501	42472330	+	0	NA	intron (NM_001381996, intron 1 of 17)	intron (NM_001381996, intron 1 of 17)	-14383	NM_022473	64397		NM_022473	ENSG00000103994	ZNF106	SH3BP3|ZFP106|ZNF474	zinc finger protein 106	protein-coding
168970	chr3	152391471	152391630	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-50560	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
25510	chr10	7252071	7252230	+	0	NA	intron (NM_001029880, intron 7 of 20)	intron (NM_001029880, intron 7 of 20)	-65366	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
217020	chr8	23220361	23220700	+	0	NA	intron (NM_003844, intron 1 of 9)	intron (NM_003844, intron 1 of 9)	4572	NM_003844	8797		NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
107521	chr18	48167121	48167380	+	0	NA	intron (NM_001371290, intron 7 of 9)	intron (NM_001371290, intron 7 of 9)	26676	NM_001371288	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
153504	chr22	26492051	26492750	+	0	NA	3' UTR (NM_001013694, exon 7 of 7)	3' UTR (NM_001013694, exon 7 of 7)	8523	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
26485	chr10	17684321	17684830	+	0	NA	intron (NM_001324285, intron 3 of 14)	intron (NM_001324285, intron 3 of 14)	40424	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
220668	chr8	101153521	101154450	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	16254	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
140936	chr2	237732671	237734450	+	0	NA	intron (NM_001137550, intron 8 of 23)	intron (NM_001137550, intron 8 of 23)	41355	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
114174	chr19	11378271	11378830	+	0	NA	non-coding (NR_033663, exon 8 of 8)	non-coding (NR_033663, exon 8 of 8)	3884	NM_175871	126074		NM_175871	ENSG00000173928	SWSAP1	C19orf39|SWS1AP1|ZSWIM7AP1	SWIM-type zinc finger 7 associated protein 1	protein-coding
75082	chr15	64387321	64388530	+	0	NA	promoter-TSS (NM_001321924)	promoter-TSS (NM_001321924)	89	NM_016213	9325		NM_016213	ENSG00000103671	TRIP4	ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5	thyroid hormone receptor interactor 4	protein-coding
71115	chr14	104927201	104928730	+	0	NA	intron (NM_001308174, intron 3 of 10)	intron (NM_001308174, intron 3 of 10)	3086	NM_001308174	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
226036	chr9	42743421	42743880	+	0	NA	Intergenic	CpG	-44750	NR_131213	105500239		NR_131213		XLOC_007697	-	uncharacterized LOC105500239	ncRNA
51785	chr12	53351471	53351850	+	0	NA	Intergenic	AluY|SINE|Alu	-6867	NM_001300837	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
27075	chr10	27238071	27238450	+	0	NA	intron (NM_001352582, intron 2 of 11)	AluY|SINE|Alu	2226	NM_001301252	91452		NM_145698	ENSG00000107897	ACBD5	RDLKD	acyl-CoA binding domain containing 5	protein-coding
185972	chr5	133109971	133110330	+	0	NA	Intergenic	Intergenic	58137	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
179069	chr4	166048821	166049080	+	0	NA	intron (NM_012464, intron 12 of 20)	intron (NM_012464, intron 12 of 20)	175713	NM_012464	7092		NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding
218545	chr8	54018621	54019680	+	0	NA	intron (NM_006756, intron 1 of 9)	intron (NM_006756, intron 1 of 9)	3298	NM_006756	6917		NM_006756	ENSG00000187735	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A1	protein-coding
69182	chr14	92653851	92653950	+	0	NA	intron (NM_024832, intron 6 of 9)	AluJb|SINE|Alu	77666	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
4237	chr1	19495871	19496030	+	0	NA	Intergenic	Intergenic	-10411	NM_001206540	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
6439	chr1	28234451	28234550	+	0	NA	Intergenic	Intergenic	-1471	NR_159454	22826		NM_014280	ENSG00000126698	DNAJC8	HSPC331|SPF31	DnaJ heat shock protein family (Hsp40) member C8	protein-coding
190122	chr5	177982371	177982930	+	0	NA	Intergenic	Intergenic	13592	NM_006261	5626		NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
216356	chr8	17413121	17413580	+	0	NA	promoter-TSS (NM_004686)	promoter-TSS (NM_004686)	1	NM_004686	9108		NM_004686	ENSG00000003987	MTMR7	-	myotubularin related protein 7	protein-coding
32018	chr10	101008451	101008950	+	0	NA	TTS (NM_001318099)	TTS (NM_001318099)	6203	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
152937	chr22	22817501	22818030	+	0	NA	Intergenic	Intergenic	-5011	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
119878	chr19	41516451	41517400	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-16276	NR_040109	100505495		NR_040109	ENSG00000267107	PCAT19	LINC01190	prostate cancer associated transcript 19	ncRNA
165209	chr3	72846621	72846880	+	0	NA	intron (NM_018130, intron 1 of 10)	intron (NM_018130, intron 1 of 10)	1695	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
17844	chr1	159916351	159917130	+	0	NA	Intergenic	Intergenic	6994	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
11997	chr1	95043371	95044150	+	0	NA	intron (NM_001305242, intron 2 of 4)	intron (NM_001305242, intron 2 of 4)	-17836	NR_132786	101928098		NR_132786	ENSG00000230427	ALG14-AS1	-	ALG14 antisense RNA 1	ncRNA
176084	chr4	82890401	82892250	+	0	NA	promoter-TSS (NM_001191049)	promoter-TSS (NM_001191049)	-45	NM_001300744	22872		NM_014933	ENSG00000138674	SEC31A	ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1	SEC31 homolog A, COPII coat complex component	protein-coding
62665	chr13	102587951	102588200	+	0	NA	Intergenic	Intergenic	-8911	NM_003291	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
225635	chr9	36332001	36332650	+	0	NA	Intergenic	Intergenic	-55347	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
1141	chr1	2160201	2160400	+	0	NA	intron (NR_146911, intron 7 of 15)	intron (NR_146911, intron 7 of 15)	23575	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
213480	chr7	139042301	139042500	+	0	NA	Intergenic	AluSc|SINE|Alu	1757	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
108226	chr18	63194051	63194150	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	125669	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
111843	chr19	4574671	4575030	+	0	NA	Intergenic	Intergenic	-15166	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
43049	chr11	74255571	74256150	+	0	NA	Intergenic	Intergenic	-55502	NR_120556	101928580		NR_120556	ENSG00000246211	P4HA3-AS1	-	P4HA3 antisense RNA 1	ncRNA
82030	chr16	12077321	12077580	+	0	NA	intron (NM_032167, intron 10 of 20)	intron (NM_032167, intron 10 of 20)	100716	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
109936	chr19	1318671	1319630	+	0	NA	Intergenic	Intergenic	33277	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
77697	chr15	85665601	85666000	+	0	NA	intron (NM_007200, intron 13 of 36)	L1PA6|LINE|L1	45850	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
86436	chr16	66895001	66895800	+	0	NA	Intergenic	Intergenic	14885	NM_020786	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
173073	chr4	6183821	6184630	+	0	NA	intron (NM_144720, intron 1 of 12)	intron (NM_144720, intron 1 of 12)	10394	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
24143	chr1	235848051	235849080	+	0	NA	intron (NM_001301365, intron 1 of 52)	L1PB1|LINE|L1	4495	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
30323	chr10	75728651	75728760	+	0	NA	intron (NR_132791, intron 1 of 2)	intron (NR_132791, intron 1 of 2)	16250	NR_132791	105378367		NR_132791		LOC105378367	-	uncharacterized LOC105378367	ncRNA
198338	chr6	104704951	104705450	+	0	NA	Intergenic	Intergenic	154346	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
123457	chr19	54150371	54150730	+	0	NA	intron (NM_014516, intron 13 of 17).8	intron (NM_014516, intron 13 of 17).8	9171	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
87233	chr16	69613071	69613830	+	0	NA	intron (NM_138713, intron 2 of 14)	L2c|LINE|L2	47484	NM_173215	10725		NM_006599	ENSG00000102908	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T cells 5	protein-coding
191977	chr6	16155671	16155830	+	0	NA	Intergenic	LTR1D1|LTR|ERV1	14194	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
44670	chr11	110453001	110453200	+	0	NA	intron (NM_004109, intron 2 of 3)	AluSq2|SINE|Alu	23152	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
62690	chr13	102729621	102729880	+	0	NA	exon (NM_001146197, exon 4 of 4)	exon (NM_001146197, exon 4 of 4)	29322	NM_001146197	643677		NM_001146197	ENSG00000175820	CCDC168	C13orf40	coiled-coil domain containing 168	protein-coding
84712	chr16	30880271	30880430	+	0	NA	intron (NR_110942, intron 2 of 2)	AluJb|SINE|Alu	4890	NR_110942	101928736		NR_110940	ENSG00000260083	MIR762HG	-	MIR762 host gene	ncRNA
133293	chr2	113591551	113592280	+	0	NA	intron (NR_024077, intron 2 of 10)	intron (NR_024077, intron 2 of 10)	8262	NR_024077	375260		NM_198943	ENSG00000291134	WASH2P	FAM39B	WASP family homolog 2, pseudogene	pseudo
57410	chr12	121832851	121833380	+	0	NA	TTS (NM_001353345)	TTS (NM_001353345)	25744	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
30475	chr10	79240751	79241050	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-106569	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
36021	chr11	2913251	2913350	+	0	NA	intron (NM_183233, intron 5 of 10)	intron (NM_183233, intron 5 of 10)	-9725	NR_169304	5003		NM_007105	ENSG00000254827	SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	SLC22A18 antisense RNA	ncRNA
44521	chr11	107598601	107598830	+	0	NA	intron (NM_001308018, intron 1 of 12)	intron (NM_001308018, intron 1 of 12)	7568	NM_018712	55531		NM_018712	ENSG00000110675	ELMOD1	-	ELMO domain containing 1	protein-coding
79131	chr16	225451	225750	+	0	NA	intron (NM_018032, intron 2 of 8)	AluSp|SINE|Alu	3849	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
145995	chr20	46402551	46402980	+	0	NA	intron (NM_001318253, intron 1 of 21)	MIR3|SINE|MIR	3850	NM_001318253	63916		NM_022086	ENSG00000062598	ELMO2	CED-12|CED12|Ced-12A|ELMO-2|VMPI	engulfment and cell motility 2	protein-coding
238046	chrX	135420371	135420730	+	0	NA	Intergenic	AluSx|SINE|Alu	-1394	NM_203306	399668		NM_203306	ENSG00000178947	SMIM10L2A	LED|LINC00086|LINC00087|LINC0086|NCRNA00086|NCRNA00087|SMIM10L2B	small integral membrane protein 10 like 2A	protein-coding
196610	chr6	44245371	44248450	+	0	NA	promoter-TSS (NM_001271971)	promoter-TSS (NM_001271971)	-48	NM_001271972	3326		NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
167464	chr3	129108151	129108450	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	13504	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
146040	chr20	47349421	47349680	+	0	NA	intron (NM_001281781, intron 1 of 20)	intron (NM_001281781, intron 1 of 20)	2199	NM_001363741	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
81699	chr16	11239651	11239950	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	16382	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
85691	chr16	56513901	56514750	+	0	NA	intron (NR_165297, intron 2 of 16)	intron (NR_165297, intron 2 of 16)	5699	NR_165297	583		NM_031885	ENSG00000125124	BBS2	BBS|RP74	Bardet-Biedl syndrome 2	protein-coding
60566	chr13	41512421	41512850	+	0	NA	Intergenic	Intergenic	55085	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
183953	chr5	88227021	88227280	+	0	NA	intron (NM_001289007, intron 3 of 12)	AluJb|SINE|Alu	41695	NM_153354	153396		NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
78605	chr15	93166771	93167130	+	0	NA	Intergenic	Intergenic	-39116	NM_001365393								
163777	chr3	52383571	52383930	+	0	NA	intron (NM_015512, intron 51 of 77)	intron (NM_015512, intron 51 of 77)	26258	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
66702	chr14	64235101	64235300	+	0	NA	intron (NM_001271877, intron 4 of 5)	intron (NM_001271877, intron 4 of 5)	19246	NM_182910	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
220940	chr8	108468351	108469000	+	0	NA	intron (NM_014673, intron 5 of 10)	intron (NM_014673, intron 5 of 10)	25051	NM_014673	9694		NM_014673	ENSG00000104412	EMC2	KIAA0103|TTC35	ER membrane protein complex subunit 2	protein-coding
234428	chrX	16836201	16836980	+	0	NA	intron (NM_018360, intron 7 of 9)	intron (NM_018360, intron 7 of 9)	33273	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
156041	chr22	39972301	39972700	+	0	NA	3' UTR (NM_001291826, exon 7 of 7)	3' UTR (NM_001291826, exon 7 of 7)	-22454	NM_138435	113828		NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding
128895	chr2	64139021	64139280	+	0	NA	intron (NM_020651, intron 1 of 6)	L1MC5a|LINE|L1	5270	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
23478	chr1	228625621	228626080	+	0	NA	TTS (NR_023363).8	TTS (NR_023363).8	177	NR_023367	100169756		NR_023367	ENSG00000199396	RNA5S5	RN5S5	RNA, 5S ribosomal 5	rRNA
166719	chr3	121544071	121544430	+	0	NA	intron (NM_199420, intron 2 of 29)	AluSz|SINE|Alu	1738	NM_199420	10721		NM_006596	ENSG00000051341	POLQ	PRO0327	DNA polymerase theta	protein-coding
79838	chr16	1443351	1444000	+	0	NA	exon (NM_001143980, exon 3 of 17)	exon (NM_001143980, exon 3 of 17)	814	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
61039	chr13	48224551	48224850	+	0	NA	Intergenic	Intergenic	-8506	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
65031	chr14	39173351	39173650	+	0	NA	Intergenic	L2b|LINE|L2	-1754	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
29798	chr10	72290671	72291450	+	0	NA	Intergenic	Intergenic	17136	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
176317	chr4	87497251	87497350	+	0	NA	intron (NM_001291976, intron 2 of 11)	intron (NM_001291976, intron 2 of 11)	32203	NM_001291977	8404		NM_004684	ENSG00000152583	SPARCL1	MAST 9|MAST9|PIG33|SC1	SPARC like 1	protein-coding
153165	chr22	23792371	23792730	+	0	NA	intron (NM_003073, intron 2 of 8).2	intron (NM_003073, intron 2 of 8).2	5584	NM_001007468	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
183603	chr5	80206101	80206880	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	49558	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
173379	chr4	7938571	7939100	+	0	NA	promoter-TSS (NM_203423)	promoter-TSS (NM_203423)	-166	NM_203423	389199		NM_203423	ENSG00000228919	LOC389199	-	uncharacterized LOC389199	ncRNA
5273	chr1	25063271	25063430	+	0	NA	Intergenic	AluSq2|SINE|Alu	39847	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
221593	chr8	125433001	125433230	+	0	NA	intron (NM_001282985, intron 1 of 2)	intron (NM_001282985, intron 1 of 2)	906	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
103394	chr17	78168121	78169400	+	0	NA	intron (NM_004710, intron 1 of 3)	CpG	179	NM_004710	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
175052	chr4	53365001	53366750	+	0	NA	exon (NM_152540, exon 1 of 9)	exon (NM_152540, exon 1 of 9)	186	NM_152540	152579		NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
199514	chr6	118707151	118707550	+	0	NA	intron (NM_001178035, intron 1 of 13)	AluJb|SINE|Alu	2725	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
120190	chr19	42274651	42274950	+	0	NA	intron (NM_001379480, intron 2 of 20)	intron (NM_001379480, intron 2 of 20)	5548	NM_001379482	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
174208	chr4	37668571	37668730	+	0	NA	intron (NM_001085400, intron 1 of 6)	SVA_D|Retroposon|SVA	17726	NM_001085399	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
10461	chr1	66325801	66326000	+	0	NA	intron (NM_001037340, intron 5 of 14)	MIR|SINE|MIR	-6208	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
190297	chr5	179595451	179596030	+	0	NA	TTS (NR_110560).2	TTS (NR_110560).2	8001	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
166687	chr3	120417071	120417900	+	0	NA	intron (NM_007085, intron 2 of 10)	intron (NM_007085, intron 2 of 10)	-21756	NR_029584	406975		NR_029584	ENSG00000284121	MIR198	MIRN198|miR-198	microRNA 198	ncRNA
220696	chr8	101623771	101623930	+	0	NA	intron (NM_024915, intron 9 of 15)	intron (NM_024915, intron 9 of 15)	131411	NM_001330593	79977		NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|PPCD4|TFCP2L3	grainyhead like transcription factor 2	protein-coding
161542	chr3	42651771	42652130	+	0	NA	intron (NR_125400, intron 1 of 2)	intron (NR_125400, intron 1 of 2)	-1747	NM_145166	92999		NM_145166	ENSG00000114853	ZBTB47	ZNF651	zinc finger and BTB domain containing 47	protein-coding
183704	chr5	80964351	80964880	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-3708	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
201326	chr6	144413021	144413780	+	0	NA	intron (NM_007124, intron 2 of 73)	THE1B|LTR|ERVL-MaLR	7745	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
64773	chr14	34634451	34634750	+	0	NA	Intergenic	AluSg|SINE|Alu	-4452	NM_001366519	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
42793	chr11	72785601	72786000	+	0	NA	intron (NM_006645, intron 1 of 6)	intron (NM_006645, intron 1 of 6)	2270	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
179363	chr4	183408201	183408400	+	0	NA	Intergenic	Intergenic	-36336	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
66348	chr14	61449671	61450500	+	0	NA	intron (NM_006255, intron 5 of 13)	intron (NM_006255, intron 5 of 13)	120109	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
104725	chr17	81636501	81637530	+	0	NA	promoter-TSS (NM_017921)	promoter-TSS (NM_017921)	97	NM_017921	55666		NM_017921	ENSG00000182446	NPLOC4	NPL4	NPL4 homolog, ubiquitin recognition factor	protein-coding
10800	chr1	77755601	77755900	+	0	NA	intron (NM_201626, intron 1 of 21)	intron (NM_201626, intron 1 of 21)	4102	NM_001377431	23032		NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
31574	chr10	97331901	97332300	+	0	NA	TTS (NM_012083)	TTS (NM_012083)	2629	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
14279	chr1	143709651	143709850	+	0	NA	Intergenic	ERV24B_Prim-int|LTR|ERV1	-10131	NR_104078	101954269		NR_104078	ENSG00000207349	RNVU1-17	RNU1-127|vU1.17	RNA, variant U1 small nuclear 17	snRNA
114402	chr19	12631121	12631450	+	0	NA	3' UTR (NM_153358, exon 4 of 4)	3' UTR (NM_153358, exon 4 of 4)	20365	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
70612	chr14	102798751	102799050	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	21421	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
15246	chr1	149612651	149613150	+	0	NA	intron (NR_111950, intron 1 of 8)	intron (NR_111950, intron 1 of 8)	5888	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
218827	chr8	59120801	59121000	+	0	NA	non-coding (NR_149030, exon 2 of 2)	non-coding (NR_149030, exon 2 of 2)	1690	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
84224	chr16	29970301	29970500	+	0	NA	intron (NM_001369690, intron 4 of 4)	AluY|SINE|Alu	-3468	NM_004783	9344		NM_004783	ENSG00000149930	TAOK2	MAP3K17|PSK|PSK1|PSK1-BETA|TAO1|TAO2|Tao2beta	TAO kinase 2	protein-coding
58544	chr12	132242501	132243580	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-32351	NR_024563	100130238		NR_024563		GALNT9-AS1	-	GALNT9 antisense RNA 1	ncRNA
142762	chr20	10536471	10536700	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	101280	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
89128	chr16	88507471	88507930	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	23353	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
112412	chr19	6201401	6201630	+	0	NA	Intergenic	AluSx3|SINE|Alu	65848	NM_001289179	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
152492	chr22	20920051	20920930	+	0	NA	intron (NR_156180, intron 1 of 3)	AluSx3|SINE|Alu	3083	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
44903	chr11	115170221	115170480	+	0	NA	3' UTR (NM_001301044, exon 11 of 11)	3' UTR (NM_001301044, exon 11 of 11)	-163227	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
185876	chr5	132662821	132663800	+	0	NA	Intergenic	Intergenic	5137	NM_002188	3596		NM_002188	ENSG00000169194	IL13	IL-13|P600	interleukin 13	protein-coding
59000	chr13	20120381	20121880	+	0	NA	Intergenic	AluSq2|SINE|Alu	18429	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
10295	chr1	64850121	64850450	+	0	NA	intron (NM_001321857, intron 12 of 24)	intron (NM_001321857, intron 12 of 24)	105210	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
102858	chr17	76493501	76494780	+	0	NA	intron (NR_164786, intron 1 of 19)	intron (NR_164786, intron 1 of 19)	7283	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
207040	chr7	39465071	39465250	+	0	NA	3' UTR (NM_001166018, exon 11 of 11)	3' UTR (NM_001166018, exon 11 of 11)	-58814	NR_046711	100861520		NR_046711	ENSG00000224122	POU6F2-AS1	-	POU6F2 antisense RNA 1	ncRNA
117541	chr19	20922951	20924050	+	0	NA	intron (NR_045830, intron 1 of 3).2	intron (NR_045830, intron 1 of 3).2	247	NM_001256173	7639		NM_003429	ENSG00000105750	ZNF85	HPF4|HTF1	zinc finger protein 85	protein-coding
58052	chr12	124481471	124481700	+	0	NA	intron (NM_001077261, intron 5 of 47)	L2a|LINE|L2	86027	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
232990	chr9	136988521	136989500	+	0	NA	Intergenic	AluJr|SINE|Alu	-3412	NR_138077	286257		NM_183241	ENSG00000148362	PAXX	C9orf142|XLS	PAXX non-homologous end joining factor	protein-coding
166552	chr3	115512071	115512230	+	0	NA	Intergenic	MIRb|SINE|MIR	-111360	NM_002045	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
208525	chr7	70354621	70354950	+	0	NA	intron (NM_015570, intron 4 of 18)	MER33|DNA|hAT-Charlie	756310	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
4561	chr1	22049501	22049900	+	0	NA	Intergenic	Intergenic	-3009	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
172218	chr4	1310771	1311950	+	0	NA	intron (NM_001297433, intron 1 of 8)	intron (NM_001297433, intron 1 of 8)	1569	NM_001297433	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
91407	chr17	4699121	4699380	+	0	NA	intron (NM_001278241, intron 1 of 18)	AluYm1|SINE|Alu	4887	NM_001278241	27043		NM_014389	ENSG00000141456	PELP1	MNAR|P160	proline, glutamate and leucine rich protein 1	protein-coding
10260	chr1	64471271	64471580	+	0	NA	intron (NM_020925, intron 1 of 26)	intron (NM_020925, intron 1 of 26)	1296	NM_020925	57685		NM_020925	ENSG00000158966	CACHD1	-	cache domain containing 1	protein-coding
235458	chrX	46562101	46562500	+	0	NA	Intergenic	Intergenic	-11465	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
64113	chr14	22824001	22824300	+	0	NA	Intergenic	Intergenic	-4359	NM_001126106	9056		NM_003982	ENSG00000155465	SLC7A7	LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1	solute carrier family 7 member 7	protein-coding
140832	chr2	236607301	236607900	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	37775	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
89821	chr16	89570121	89570480	+	0	NA	Intergenic	Intergenic	-5458	NM_014427	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
159649	chr3	15320201	15320850	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	12061	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
238824	chrX	154435021	154435580	+	0	NA	exon (NM_001183, exon 9 of 10)	exon (NM_001183, exon 9 of 10)	-1854	NM_001493	2664		NM_001493	ENSG00000203879	GDI1	1A|GDIL|MRX41|MRX48|OPHN2|RABGD1A|RABGDIA|XAP-4|XLID41	GDP dissociation inhibitor 1	protein-coding
46301	chr11	124880021	124880280	+	0	NA	intron (NR_163413, intron 7 of 8)	intron (NR_163413, intron 7 of 8)	3336	NM_001370357	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
154981	chr22	37292821	37293080	+	0	NA	intron (NM_001318024, intron 2 of 12)	intron (NM_001318024, intron 2 of 12)	10442	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
118246	chr19	35224171	35224330	+	0	NA	TTS (NM_152481)	TTS (NM_152481)	4475	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
101823	chr17	73591321	73593080	+	0	NA	intron (NM_001144952, intron 1 of 44)	Tigger19a|DNA|TcMar-Tigger	52245	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
35067	chr11	606171	606630	+	0	NA	intron (NM_001286582, intron 12 of 17)	intron (NM_001286582, intron 12 of 17)	9550	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
126839	chr2	31233801	31234900	+	0	NA	promoter-TSS (NM_001321270)	promoter-TSS (NM_001321270)	198	NM_014600	30845		NM_014600	ENSG00000013016	EHD3	PAST3	EH domain containing 3	protein-coding
143303	chr20	25311501	25311900	+	0	NA	intron (NM_001042472, intron 6 of 12)	intron (NM_001042472, intron 6 of 12)	63615	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
187985	chr5	149519351	149519450	+	0	NA	intron (NM_001025105, intron 4 of 10)	intron (NM_001025105, intron 4 of 10)	30965	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
40003	chr11	62643251	62643550	+	0	NA	intron (NM_198334, intron 1 of 23)	AluSx|SINE|Alu	-3182	NM_001329222	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
132140	chr2	101723101	101723300	+	0	NA	intron (NM_001384572, intron 1 of 29)	THE1D|LTR|ERVL-MaLR	24935	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
174022	chr4	26613101	26613500	+	0	NA	intron (NM_018317, intron 2 of 20)	intron (NM_018317, intron 2 of 20)	29216	NM_018317	55296		NM_018317	ENSG00000109680	TBC1D19	-	TBC1 domain family member 19	protein-coding
92953	chr17	17039901	17040300	+	0	NA	Intergenic	L2c|LINE|L2	-2357	NM_001364716	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
163621	chr3	52045751	52046250	+	0	NA	Intergenic	Intergenic	10571	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
2457	chr1	9642451	9642750	+	0	NA	Intergenic	AluYk3|SINE|Alu	-9131	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
13151	chr1	111714551	111715300	+	0	NA	3' UTR (NM_001291896, exon 8 of 8)	3' UTR (NM_001291896, exon 8 of 8)	24470	NM_019099	55924		NM_019099	ENSG00000197852	INKA2	C1orf183|FAM212B	inka box actin regulator 2	protein-coding
141050	chr2	238244971	238245330	+	0	NA	3' UTR (NM_022817, exon 23 of 23)	3' UTR (NM_022817, exon 23 of 23)	-5112	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
229706	chr9	124774001	124775300	+	0	NA	Intergenic	Intergenic	-2483	NM_182487	169611		NM_182487	ENSG00000185585	OLFML2A	PRO34319	olfactomedin like 2A	protein-coding
65540	chr14	51923901	51924100	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-5429	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
232646	chr9	136474851	136475630	+	0	NA	exon (NM_001276418, exon 2 of 29)	exon (NM_001276418, exon 2 of 29)	-7770	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
46972	chr11	134851871	134852030	+	0	NA	Intergenic	Intergenic	116005	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
50567	chr12	48182901	48184300	+	0	NA	promoter-TSS (NM_001013635)	promoter-TSS (NM_001013635)	-44	NM_001013635	387856		NM_001013635	ENSG00000177875	CCDC184	C12orf68	coiled-coil domain containing 184	protein-coding
151051	chr21	44691721	44691980	+	0	NA	intron (NM_001272037, intron 1 of 12)	L1M4|LINE|L1	-5322	NM_198699	386685		NM_198699	ENSG00000189169	KRTAP10-12	KAP10.12|KRTAP18-12|KRTAP18.12	keratin associated protein 10-12	protein-coding
78104	chr15	90271871	90272030	+	0	NA	non-coding (NR_028052, exon 2 of 2)	non-coding (NR_028052, exon 2 of 2)	-6191	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
8618	chr1	41665721	41666280	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-181317	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
97618	chr17	44139871	44140230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1880	NM_001171251	78995		NM_024032	ENSG00000125319	HROB	C17orf53|MCM8IP	homologous recombination factor with OB-fold	protein-coding
67899	chr14	74563671	74563830	+	0	NA	intron (NM_000428, intron 3 of 35)	MER58B|DNA|hAT-Charlie	48487	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
105755	chr18	2761551	2761850	+	0	NA	intron (NM_015295, intron 35 of 47)	AluSz|SINE|Alu	-85306	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
37347	chr11	14894601	14894800	+	0	NA	Intergenic	Intergenic	-2469	NM_024514	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
213399	chr7	136181051	136181350	+	0	NA	Intergenic	Intergenic	-203841	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
144980	chr20	37291751	37292050	+	0	NA	intron (NM_001376533, intron 1 of 4)	THE1B|LTR|ERVL-MaLR	1631	NM_001376533	63905		NM_022077	ENSG00000101363	MANBAL	-	mannosidase beta like	protein-coding
12338	chr1	101082751	101083050	+	0	NA	intron (NR_109849, intron 3 of 4)	L2|LINE|L2	57054	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
13858	chr1	117667951	117668250	+	0	NA	Intergenic	L2b|LINE|L2	62052	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
89783	chr16	89479401	89480230	+	0	NA	intron (NM_001256182, intron 1 of 13)	AluY|SINE|Alu	10746	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
157447	chr22	45244671	45244830	+	0	NA	Intergenic	AluSz|SINE|Alu	-3856	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
109832	chr19	1182051	1182350	+	0	NA	Intergenic	Intergenic	-7932	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
76010	chr15	71372651	71373050	+	0	NA	intron (NM_024817, intron 5 of 16)	L1PA5|LINE|L1	-174386	NM_001286429	79875		NM_024817	ENSG00000187720	THSD4	AAT12|ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin type 1 domain containing 4	protein-coding
27999	chr10	43140251	43141180	+	0	NA	intron (NR_135077, intron 1 of 8)	intron (NR_135077, intron 1 of 8)	2270	NM_018590	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
62164	chr13	97260171	97260330	+	0	NA	intron (NM_001382682, intron 1 of 7)	L2a|LINE|L2	37917	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
227891	chr9	93955371	93956430	+	0	NA	promoter-TSS (NM_021570)	promoter-TSS (NM_021570)	66	NR_144455	101928040		NR_144455	ENSG00000235601	BARX1-DT	BARX1-AS1	BARX1 divergent transcript	ncRNA
143009	chr20	20594201	20594400	+	0	NA	intron (NM_020343, intron 16 of 39)	intron (NM_020343, intron 16 of 39)	118344	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
4498	chr1	21659051	21660130	+	0	NA	intron (NM_002885, intron 1 of 24)	CpG	-7692	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
116853	chr19	18606571	18607100	+	0	NA	promoter-TSS (NM_004750)	promoter-TSS (NM_004750)	-36	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
26582	chr10	21999471	21999630	+	0	NA	intron (NM_022365, intron 1 of 11)	AluSg7|SINE|Alu	4180	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
57211	chr12	121504801	121505400	+	0	NA	intron (NM_001005366, intron 11 of 22)	AluY|SINE|Alu	-60748	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
88389	chr16	84615671	84616030	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	2228	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
34499	chr10	132551121	132552650	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	14098	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
165584	chr3	101583401	101583600	+	0	NA	intron (NR_135226, intron 2 of 2)	AluJb|SINE|Alu	9320	NM_020357	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
174944	chr4	49136851	49137480	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	150523	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
176805	chr4	102528871	102529930	+	0	NA	intron (NM_001382625, intron 3 of 24)	intron (NM_001382625, intron 3 of 24)	-26914	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
204179	chr7	2459001	2459430	+	0	NA	Intergenic	AluSx1|SINE|Alu	17168	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
134177	chr2	134282671	134283630	+	0	NA	intron (NM_001371457, intron 3 of 16)	MIRb|SINE|MIR	29078	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
84172	chr16	29813051	29813150	+	0	NA	exon (NM_001256443, exon 2 of 2)	exon (NM_001256443, exon 2 of 2)	907	NM_001256443	112476		NM_145239	ENSG00000167371	PRRT2	BFIC2|BFIS2|DSPB3|DYT10|EKD1|FICCA|ICCA|IFITMD1|PKC	proline rich transmembrane protein 2	protein-coding
32226	chr10	101820401	101820600	+	0	NA	intron (NR_045118, intron 1 of 2)	AluSp|SINE|Alu	1432	NR_045118	100289509		NR_045118		KCNIP2-AS1	-	KCNIP2 antisense RNA 1	ncRNA
82541	chr16	18398221	18399130	+	0	NA	intron (NR_146331, intron 1 of 37)	AluSc5|SINE|Alu	3250	NR_146331	110006322		NR_146331		PKD1P5-LOC105376752	-	PKD1P5-LOC105376752 readthrough	pseudo
40669	chr11	64752651	64752830	+	0	NA	intron (NM_001164716, intron 10 of 17)	intron (NM_001164716, intron 10 of 17)	7234	NM_005609	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
26318	chr10	15095551	15095850	+	0	NA	non-coding (NR_160789, exon 2 of 2)	non-coding (NR_160789, exon 2 of 2)	-1480	NM_001265601	10557		NM_006414	ENSG00000152464	RPP38	-	ribonuclease P/MRP subunit p38	protein-coding
213093	chr7	131110931	131111780	+	0	NA	intron (NM_001145354, intron 1 of 18)	intron (NM_001145354, intron 1 of 18)	1261	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
72416	chr15	31439301	31439950	+	0	NA	Intergenic	Intergenic	112790	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
780	chr1	1534101	1534730	+	0	NA	TTS (NM_001114748)	TTS (NM_001114748)	6209	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
126765	chr2	30246701	30247100	+	0	NA	intron (NM_030915, intron 2 of 2)	AluJr|SINE|Alu	15366	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
195764	chr6	40437951	40438050	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	59663	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
55072	chr12	96502301	96502930	+	0	NA	intron (NM_001367885, intron 2 of 68)	intron (NM_001367885, intron 2 of 68)	13038	NM_001367885	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
42244	chr11	68117071	68117630	+	0	NA	intron (NM_212469, intron 1 of 10)	intron (NM_212469, intron 1 of 10)	4038	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
4008	chr1	18926151	18927300	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	-23926	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
133401	chr2	118835771	118836130	+	0	NA	Intergenic	CpG	11698	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
176661	chr4	100063471	100063630	+	0	NA	Intergenic	Intergenic	113056	NR_125923	256880		NR_002799		H2AZ1-DT	-	H2AZ1 divergent transcript	ncRNA
137220	chr2	191566071	191566630	+	0	NA	Intergenic	Intergenic	-111722	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
96586	chr17	40514921	40516300	+	0	NA	Intergenic	L2c|LINE|L2	-13987	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
195663	chr6	38034971	38035130	+	0	NA	intron (NM_021943, intron 2 of 5)	intron (NM_021943, intron 2 of 5)	215323	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
30572	chr10	79938801	79939000	+	0	NA	intron (NM_003019, intron 7 of 7)	intron (NM_003019, intron 7 of 7)	10205	NM_003019	6441		NM_003019	ENSG00000133661	SFTPD	COLEC7|PSP-D|SFTP4|SP-D	surfactant protein D	protein-coding
99094	chr17	49011721	49012250	+	0	NA	intron (NM_001160423, intron 2 of 12)	AluSx|SINE|Alu	14600	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
208847	chr7	73702471	73703080	+	0	NA	intron (NM_004603, intron 8 of 9)	intron (NM_004603, intron 8 of 9)	-8542	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
71614	chr14	106674451	106675150	+	0	NA	Intergenic	Intergenic	176199	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
138849	chr2	216555371	216555530	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	51488	NR_110392	101928232		NR_110392		LINC01280	-	long intergenic non-protein coding RNA 1280	ncRNA
22321	chr1	213985001	213985900	+	0	NA	intron (NR_037850, intron 1 of 5)	CpG	703	NR_037850	100505832		NR_037850	ENSG00000230461	PROX1-AS1	-	PROX1 antisense RNA 1	ncRNA
114745	chr19	13241851	13241950	+	0	NA	intron (NM_023035, intron 31 of 46)	intron (NM_023035, intron 31 of 46)	91489	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
86103	chr16	57652871	57653030	+	0	NA	intron (NM_001370440, intron 4 of 14)	intron (NM_001370440, intron 4 of 14)	13458	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
153289	chr22	24166801	24167000	+	0	NA	exon (NM_001199281, exon 32 of 37)	exon (NM_001199281, exon 32 of 37)	-14587	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
71775	chr15	21284271	21285000	+	0	NA	Intergenic	Intergenic	13194	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
17914	chr1	160208851	160209830	+	0	NA	promoter-TSS (NR_123725)	promoter-TSS (NR_123725)	-471	NR_123725	729867		NR_123725	ENSG00000227741	LOC729867	-	uncharacterized LOC729867	ncRNA
211346	chr7	104947851	104948150	+	0	NA	Intergenic	Intergenic	-21355	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
8970	chr1	44609571	44609880	+	0	NA	intron (NM_001319957, intron 1 of 13)	intron (NM_001319957, intron 1 of 13)	-22243	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
117325	chr19	19515771	19517000	+	0	NA	promoter-TSS (NM_032037)	promoter-TSS (NM_032037)	160	NM_015965	51079		NM_015965	ENSG00000186010	NDUFA13	B16.6|CDA016|CGI-39|GRIM-19|GRIM19|MC1DN28	NADH:ubiquinone oxidoreductase subunit A13	protein-coding
224522	chr9	19129851	19130530	+	0	NA	Intergenic	LTR49|LTR|ERV1	-2584	NR_038064	123		NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
99968	chr17	57537621	57538080	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	-14253	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
40871	chr11	65101701	65102600	+	0	NA	intron (NR_073519, intron 2 of 9)	AluSx1|SINE|Alu	5936	NR_073519	738		NM_013265	ENSG00000149823	VPS51	ANG2|ANG3|C11orf2|C11orf3|FFR|PCH13	VPS51 subunit of GARP complex	protein-coding
67525	chr14	70998571	70999830	+	0	NA	intron (NM_014982, intron 8 of 35)	intron (NM_014982, intron 8 of 35)	91741	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
160095	chr3	18891651	18892130	+	0	NA	Intergenic	Intergenic	-256620	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
15578	chr1	150569901	150570700	+	0	NA	intron (NR_104133, intron 2 of 3)	AluJb|SINE|Alu	4252	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
93032	chr17	17278701	17279330	+	0	NA	intron (NM_001316354, intron 1 of 11)	AluSx1|SINE|Alu	1683	NM_001199125	8533		NM_003653	ENSG00000141030	COPS3	CSN3|SGN3	COP9 signalosome subunit 3	protein-coding
225719	chr9	36788521	36788780	+	0	NA	Intergenic	Intergenic	34949	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA
162393	chr3	48170051	48170480	+	0	NA	intron (NM_001789, intron 9 of 14)	MER21B|LTR|ERVL	18152	NM_001789	993		NM_001789	ENSG00000164045	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
3278	chr1	15250371	15250530	+	0	NA	intron (NM_052929, intron 1 of 30)	L1ME2z|LINE|L1	3225	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
76641	chr15	75622501	75623250	+	0	NA	intron (NM_001042588, intron 1 of 8)	FLAM_A|SINE|Alu	2850	NM_005701	10073		NM_005701	ENSG00000169371	SNUPN	KPNBL|RNUT1|Snurportin1	snurportin 1	protein-coding
155428	chr22	38452521	38453100	+	0	NA	intron (NM_152868, intron 1 of 1)	intron (NM_152868, intron 1 of 1)	2389	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
187492	chr5	142223471	142224330	+	0	NA	Intergenic	AluJb|SINE|Alu	94422	NR_131221	100642175		NR_131221		SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
232679	chr9	136518501	136518700	+	0	NA	TTS (NR_039820)	TTS (NR_039820)	1026	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
196860	chr6	49034551	49034650	+	0	NA	Intergenic	AluY|SINE|Alu	428653	NM_000255	4594		NM_000255	ENSG00000146085	MMUT	MCM|MUT	methylmalonyl-CoA mutase	protein-coding
102677	chr17	76104871	76105100	+	0	NA	Intergenic	Intergenic	-1198	NM_001375976	23265		NM_015219	ENSG00000182473	EXOC7	2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|NEDSEBA|YJL085W	exocyst complex component 7	protein-coding
39711	chr11	61755701	61755900	+	0	NA	intron (NR_026882, intron 2 of 3)	intron (NR_026882, intron 2 of 3)	422	NM_013279	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
60581	chr13	41917601	41918080	+	0	NA	intron (NM_015058, intron 2 of 44)	intron (NM_015058, intron 2 of 44)	43245	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
71255	chr14	105201271	105201430	+	0	NA	Intergenic	Intergenic	-20027	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
40178	chr11	62894451	62894830	+	0	NA	Intergenic	AluSg|SINE|Alu	12941	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
208341	chr7	66490671	66491300	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2647	NR_134573	100289098		NR_134570	ENSG00000237310	LINC03011	GS1-124K5.4	long intergenic non-protein coding RNA 3011	ncRNA
52643	chr12	56284501	56285100	+	0	NA	intron (NM_004077, intron 3 of 10)	AluSc|SINE|Alu	15530	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
83085	chr16	22436151	22436250	+	0	NA	promoter-TSS (NR_027154)	promoter-TSS (NR_027154)	-808	NR_027154	641298		NM_199284	ENSG00000237296	SMG1P1	-	SMG1 pseudogene 1	pseudo
222342	chr8	133541301	133541930	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	30272	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
150548	chr21	43077901	43078300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1157	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
118279	chr19	35278921	35279530	+	0	NA	exon (NM_207291, exon 9 of 9)	exon (NM_207291, exon 9 of 9)	-3303	NM_021175	57817		NM_021175	ENSG00000105697	HAMP	HEPC|HFE2B|LEAP1|PLTR	hepcidin antimicrobial peptide	protein-coding
159676	chr3	15429721	15430150	+	0	NA	exon (NM_033083, exon 2 of 6)	exon (NM_033083, exon 2 of 6)	2337	NM_033083	85403		NM_033083	ENSG00000144597	EAF1	-	ELL associated factor 1	protein-coding
169883	chr3	177449001	177450050	+	0	NA	intron (NR_047568, intron 1 of 3)	intron (NR_047568, intron 1 of 3)	7604	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
231021	chr9	129581971	129582130	+	0	NA	Intergenic	Intergenic	-26834	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
178410	chr4	147709171	147709330	+	0	NA	Intergenic	MER41B|LTR|ERV1	-22838	NM_024605	79658		NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
200171	chr6	130624251	130624350	+	0	NA	Intergenic	MER65A|LTR|ERV1	187183	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
219048	chr8	65786651	65787330	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	2067	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
182447	chr5	62313301	62313500	+	0	NA	intron (NM_001243952, intron 2 of 20)	AluSx3|SINE|Alu	7194	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
115650	chr19	16119541	16120450	+	0	NA	intron (NM_005370, intron 2 of 7)	AluSq|SINE|Alu	8106	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
227397	chr9	89526751	89527580	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-29052	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
211073	chr7	102474971	102475650	+	0	NA	intron (NM_001371100, intron 1 of 2)	intron (NM_001371100, intron 1 of 2)	3612	NM_001371100	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
23036	chr1	226457001	226457720	+	0	NA	Intergenic	Intergenic	-49267	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
95527	chr17	36563021	36563280	+	0	NA	intron (NM_024835, intron 5 of 13)	AluSq2|SINE|Alu	18231	NM_024835	79893		NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
215156	chr7	155506851	155507030	+	0	NA	non-coding (NR_163166, exon 3 of 4)	non-coding (NR_163166, exon 3 of 4)	2934	NM_001369821	285888		NM_001103176	ENSG00000146910	CNPY1	-	canopy FGF signaling regulator 1	protein-coding
158854	chr3	9820721	9821380	+	0	NA	intron (NM_001366051, intron 7 of 12)	MER103C|DNA|hAT-Charlie	10788	NR_037162	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
104968	chr17	81973221	81973880	+	0	NA	Intergenic	L1MC4|LINE|L1	-4079	NM_001330528	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
88187	chr16	81737771	81738680	+	0	NA	Intergenic	Intergenic	-41066	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
167222	chr3	128459071	128459230	+	0	NA	Intergenic	Intergenic	-4444	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
195286	chr6	36515051	36515500	+	0	NA	intron (NM_007271, intron 7 of 13)	intron (NM_007271, intron 7 of 13)	32204	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
10486	chr1	66367451	66367880	+	0	NA	intron (NM_001037340, intron 11 of 14)	intron (NM_001037340, intron 11 of 14)	13130	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
152985	chr22	23144151	23144250	+	0	NA	Intergenic	Intergenic	-1124	NM_001349878	9609		NM_004914	ENSG00000100228	RAB36	-	RAB36, member RAS oncogene family	protein-coding
25630	chr10	8088451	8089350	+	0	NA	Intergenic	(ATAATA)n|Simple_repeat|Simple_repeat	34212	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
225687	chr9	36485001	36485550	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-84077	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
41228	chr11	65715001	65715400	+	0	NA	intron (NM_182709, intron 8 of 12)	L2c|LINE|L2	2948	NM_006388	10524		NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|NEDFASB|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
185849	chr5	132485401	132486780	+	0	NA	intron (NM_001354924, intron 6 of 8)	intron (NM_001354924, intron 6 of 8)	4683	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
171480	chr3	196506351	196506450	+	0	NA	TTS (NM_001320473)	TTS (NM_001320473)	-2632	NM_152617	165918		NM_152617	ENSG00000163961	RNF168	RIDL|hRNF168	ring finger protein 168	protein-coding
115900	chr19	16591171	16591630	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-18985	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
167197	chr3	128297001	128297200	+	0	NA	intron (NM_021937, intron 4 of 6)	intron (NM_021937, intron 4 of 6)	-143186	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
53844	chr12	69590701	69591100	+	0	NA	intron (NM_006431, intron 7 of 15)	AluSx|SINE|Alu	5011	NM_001198842	10576		NM_006431	ENSG00000166226	CCT2	99D8.1|CCT-beta|CCTB|HEL-S-100n|PRO1633|TCP-1-beta	chaperonin containing TCP1 subunit 2	protein-coding
101241	chr17	66244951	66245250	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-15685	NM_000042	350		NM_000042	ENSG00000091583	APOH	B2G1|B2GP1|BG	apolipoprotein H	protein-coding
211379	chr7	105009371	105009670	+	0	NA	Intergenic	Intergenic	4621	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
37149	chr11	13550651	13551150	+	0	NA	Intergenic	Intergenic	-54725	NM_001316352	5741		NM_000315	ENSG00000152266	PTH	FIH1|PTH1	parathyroid hormone	protein-coding
119582	chr19	40690321	40692980	+	0	NA	promoter-TSS (NM_001289979)	promoter-TSS (NM_001289979)	-999	NM_001289979	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
31735	chr10	97736401	97737780	+	0	NA	promoter-TSS (NM_001174122)	promoter-TSS (NM_001174122)	-31	NM_001174120	118813		NM_144588	ENSG00000155256	ZFYVE27	PROTRUDIN|SPG33	zinc finger FYVE-type containing 27	protein-coding
89056	chr16	88445051	88445630	+	0	NA	Intergenic	MIRb|SINE|MIR	-7940	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
32703	chr10	104035751	104036530	+	0	NA	intron (NM_000494, intron 48 of 55)	intron (NM_000494, intron 48 of 55)	12046	NR_030760	100126326		NR_030760	ENSG00000283788	MIR936	MIRN936|hsa-mir-936	microRNA 936	ncRNA
86078	chr16	57621401	57621800	+	0	NA	intron (NM_001370439, intron 1 of 13)	intron (NM_001370439, intron 1 of 13)	1554	NM_001370437	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
19664	chr1	180533521	180533810	+	0	NA	Intergenic	Intergenic	-25309	NR_125716	148756		NR_125716	ENSG00000236719	OVAAL	LINC01131|OVAL|RMEL2	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
14601	chr1	145274251	145274400	+	0	NA	Intergenic	Intergenic	-6791	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
70532	chr14	102503871	102504230	+	0	NA	3' UTR (NM_152326, exon 4 of 4)	3' UTR (NM_152326, exon 4 of 4)	5726	NM_152326	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
139753	chr2	229912601	229912930	+	0	NA	intron (NM_001348325, intron 1 of 42)	intron (NM_001348325, intron 1 of 42)	8914	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
165036	chr3	71420671	71421030	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluJr|SINE|Alu	-116079	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
147475	chr20	59124571	59125130	+	0	NA	intron (NM_001384354, intron 1 of 7)	MLT1L|LTR|ERVL-MaLR	1462	NM_001384354	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
138876	chr2	217162471	217162830	+	0	NA	Intergenic	Intergenic	-120083	NR_133642	105373877		NR_133642		DIRC3-AS1	-	DIRC3 antisense RNA 1	ncRNA
136550	chr2	177396121	177396380	+	0	NA	intron (NM_003659, intron 1 of 19)	L2b|LINE|L2	3477	NM_003659	8540		NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3	alkylglycerone phosphate synthase	protein-coding
220818	chr8	102808301	102809430	+	0	NA	intron (NR_149020, intron 1 of 1)	intron (NR_149020, intron 1 of 1)	2043	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
150989	chr21	44344571	44345030	+	0	NA	Intergenic	Intergenic	-5410	NM_001271440	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
22091	chr1	211516671	211517250	+	0	NA	Intergenic	MIRc|SINE|MIR	-24798	NM_183059	343035		NM_183059	ENSG00000198570	RD3	C1orf36|LCA12	RD3 regulator of GUCY2D	protein-coding
20659	chr1	200153101	200153600	+	0	NA	intron (NM_205860, intron 7 of 7)	intron (NM_205860, intron 7 of 7)	110525	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
104996	chr17	82015951	82017180	+	0	NA	intron (NR_045351, intron 12 of 14)	intron (NR_045351, intron 12 of 14)	6313	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
99324	chr17	49837701	49837900	+	0	NA	TTS (NM_001077504)	TTS (NM_001077504)	-8086	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
87488	chr16	71795001	71795200	+	0	NA	intron (NM_001128, intron 1 of 22)	intron (NM_001128, intron 1 of 22)	13734	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
908	chr1	1689871	1690330	+	0	NA	intron (NM_001110781, intron 1 of 8)	AluSp|SINE|Alu	2695	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
13410	chr1	113975101	113976080	+	0	NA	3' UTR (NM_001369807, exon 16 of 16)	3' UTR (NM_001369807, exon 16 of 16)	-3801	NM_001286353	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
122943	chr19	50716571	50716730	+	0	NA	intron (NM_016148, intron 2 of 23)	intron (NM_016148, intron 2 of 23)	3152	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
199161	chr6	111739251	111739900	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	19556	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
141444	chr2	241033401	241033600	+	0	NA	intron (NM_001080437, intron 2 of 31)	intron (NM_001080437, intron 2 of 31)	34882	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
184470	chr5	100777701	100777900	+	0	NA	Intergenic	Intergenic	38765	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
139654	chr2	226801021	226801700	+	0	NA	intron (NM_001349069, intron 1 of 8)	intron (NM_001349069, intron 1 of 8)	1201	NM_001349069	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
112741	chr19	7355401	7355600	+	0	NA	intron (NM_001367823, intron 1 of 28)	intron (NM_001367823, intron 1 of 28)	6563	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
147562	chr20	60167671	60168030	+	0	NA	intron (NR_046099, intron 2 of 4)	intron (NR_046099, intron 2 of 4)	29358	NR_046099	284757		NM_001004305	ENSG00000228340	MIR646HG	-	MIR646 host gene	ncRNA
162099	chr3	46901651	46902130	+	0	NA	intron (NM_001184744, intron 12 of 14)	intron (NM_001184744, intron 12 of 14)	19641	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
222193	chr8	133043101	133043300	+	0	NA	intron (NM_001282964, intron 5 of 6)	intron (NM_001282964, intron 5 of 6)	3381	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
193432	chr6	30476071	30476380	+	0	NA	Intergenic	AluSp|SINE|Alu	-13284	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
145726	chr20	45051321	45052230	+	0	NA	intron (NM_006282, intron 10 of 10)	intron (NM_006282, intron 10 of 10)	49352	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
175117	chr4	54794171	54794330	+	0	NA	Intergenic	Intergenic	136293	NM_001093772	3815		NM_000222	ENSG00000157404	KIT	C-Kit|CD117|MASTC|PBT|SCFR	KIT proto-oncogene, receptor tyrosine kinase	protein-coding
209202	chr7	75423371	75423830	+	0	NA	intron (NM_001099415, intron 12 of 14)	intron (NM_001099415, intron 12 of 14)	13278	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
104640	chr17	81446351	81447080	+	0	NA	intron (NM_001377448, intron 10 of 27)	AluJr|SINE|Alu	4473	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
180748	chr5	32033171	32033530	+	0	NA	intron (NM_178140, intron 6 of 24)	intron (NM_178140, intron 6 of 24)	-97191	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
204146	chr7	2379351	2379450	+	0	NA	exon (NM_001362792, exon 19 of 20)	exon (NM_001362792, exon 19 of 20)	-24211	NM_001243795	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
121416	chr19	47002551	47003050	+	0	NA	3' UTR (NM_004491, exon 7 of 7)	3' UTR (NM_004491, exon 7 of 7)	-17037	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
230675	chr9	128718071	128718830	+	0	NA	intron (NM_001317926, intron 17 of 21)	intron (NM_001317926, intron 17 of 21)	5677	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
139904	chr2	230721101	230721300	+	0	NA	intron (NM_001130849, intron 1 of 8)	AluSx1|SINE|Alu	7652	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
162142	chr3	46957471	46958030	+	0	NA	intron (NM_144716, intron 2 of 7)	AluSx1|SINE|Alu	18751	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
166635	chr3	119638301	119639130	+	0	NA	Intergenic	Intergenic	21874	NM_001308333	64091		NM_022135	ENSG00000121577	POPDC2	POP2	popeye domain containing 2	protein-coding
128486	chr2	58101651	58101750	+	0	NA	intron (NM_006296, intron 7 of 12)	intron (NM_006296, intron 7 of 12)	54894	NM_006296	7444		NM_006296	ENSG00000028116	VRK2	-	VRK serine/threonine kinase 2	protein-coding
207454	chr7	44579521	44580050	+	0	NA	TTS (NM_001303060)	TTS (NM_001303060)	2446	NM_001303062	222068		NM_182547	ENSG00000158604	TMED4	ERS25|GMP25iso|HNLF|p24a3|p24alpha3	transmembrane p24 trafficking protein 4	protein-coding
226209	chr9	65669751	65670400	+	0	NA	Intergenic	Intergenic	-5759	NR_104600	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
18558	chr1	162577321	162577580	+	0	NA	intron (NM_001324114, intron 3 of 9)	AluJb|SINE|Alu	15551	NM_001324114	6675		NM_003115	ENSG00000117143	UAP1	AGX|AGX1|AGX2|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
31103	chr10	89301201	89302880	+	0	NA	promoter-TSS (NM_001547)	promoter-TSS (NM_001547)	-6	NM_001547	3433		NM_001547	ENSG00000119922	IFIT2	G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54|ISG-54 K|ISG-54K|ISG54|P54|cig42	interferon induced protein with tetratricopeptide repeats 2	protein-coding
69839	chr14	99239001	99240050	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	32672	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
70736	chr14	103360551	103361050	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	22951	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
71038	chr14	104783351	104783830	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	10011	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
237642	chrX	124224671	124225350	+	0	NA	Intergenic	MIR|SINE|MIR	-107650	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
169259	chr3	157165501	157165700	+	0	NA	Intergenic	AluJb|SINE|Alu	-5453	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
130191	chr2	84447651	84447950	+	0	NA	intron (NM_003849, intron 2 of 8)	AluJb|SINE|Alu	11480	NM_003849	8802		NM_003849	ENSG00000163541	SUCLG1	GALPHA|MTDPS9|SUCLA1	succinate-CoA ligase GDP/ADP-forming subunit alpha	protein-coding
119786	chr19	41318451	41319730	+	0	NA	intron (NM_001346100, intron 2 of 4)	intron (NM_001346100, intron 2 of 4)	8613	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
98411	chr17	46594671	46594830	+	0	NA	intron (NR_040116, intron 1 of 19).2	L3|LINE|CR1	4016	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
4220	chr1	19467201	19467400	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	16995	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
227379	chr9	89500251	89500700	+	0	NA	Intergenic	Intergenic	-2362	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
126449	chr2	28250151	28250450	+	0	NA	intron (NM_199193, intron 11 of 13)	L2b|LINE|L2	-43339	NR_120504	100505736		NR_120504		LOC100505736	-	uncharacterized LOC100505736	ncRNA
218094	chr8	38964301	38964500	+	0	NA	intron (NM_021623, intron 10 of 11)	MER1B|DNA|hAT-Charlie	-9828	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
57842	chr12	123252721	123253300	+	0	NA	intron (NM_001194995, intron 1 of 2)	intron (NM_001194995, intron 1 of 2)	15244	NM_001270434	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
94023	chr17	27199921	27200200	+	0	NA	Intergenic	Intergenic	93936	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
78322	chr15	90956401	90957330	+	0	NA	exon (NM_001017919, exon 2 of 8)	exon (NM_001017919, exon 2 of 8)	1989	NM_033544	91433		NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
208868	chr7	73730951	73731450	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3869	NR_026690	171022		NR_026690		ABHD11-AS1	LINC00035|NCRNA00035|WBSCR26	ABHD11 antisense RNA 1 (tail to tail)	ncRNA
172674	chr4	2733871	2734030	+	0	NA	Intergenic	Intergenic	22386	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
163508	chr3	51390801	51392400	+	0	NA	exon (NM_013286, exon 1 of 1)	exon (NM_013286, exon 1 of 1)	315	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
20896	chr1	202154771	202156030	+	0	NA	intron (NR_037663, intron 5 of 9)	intron (NR_037663, intron 5 of 9)	4054	NM_001364878	5778		NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase non-receptor type 7	protein-coding
32135	chr10	101242101	101242500	+	0	NA	Intergenic	Intergenic	12706	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
228225	chr9	97904451	97905680	+	0	NA	intron (NM_001371657, intron 4 of 5)	intron (NM_001371657, intron 4 of 5)	17116	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
11567	chr1	91502821	91503150	+	0	NA	intron (NM_001134420, intron 2 of 11)	intron (NM_001134420, intron 2 of 11)	1877	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
21330	chr1	204529271	204529800	+	0	NA	intron (NM_001278519, intron 3 of 4)	intron (NM_001278519, intron 3 of 4)	13129	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
229935	chr9	126642551	126642650	+	0	NA	intron (NM_001174147, intron 2 of 7)	L2b|LINE|L2	28672	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
205130	chr7	7060751	7060850	+	0	NA	Intergenic	SATR1|Satellite|Satellite	6245	NR_037454	100500886		NR_037454	ENSG00000266287	MIR3683	-	microRNA 3683	ncRNA
141007	chr2	238158401	238159580	+	0	NA	promoter-TSS (NM_001291832)	promoter-TSS (NM_001291832)	20	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
83959	chr16	29152371	29152930	+	0	NA	Intergenic	Intergenic	77808	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
144687	chr20	36441351	36441450	+	0	NA	intron (NM_001365621, intron 5 of 12)	L2a|LINE|L2	-20068	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
105636	chr18	864821	865300	+	0	NA	Intergenic	Intergenic	-39811	NM_001099733	116		NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
109442	chr19	733871	734700	+	0	NA	intron (NM_002579, intron 6 of 8)	AluSx|SINE|Alu	-16827	NM_173481	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
157837	chr22	48079621	48079950	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-194579	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	ncRNA
89744	chr16	89439621	89440030	+	0	NA	intron (NR_110932, intron 1 of 2)	intron (NR_110932, intron 1 of 2)	8907	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
114469	chr19	12733121	12733800	+	0	NA	intron (NR_138095, intron 1 of 2)	MER20|DNA|hAT-Charlie	1224	NM_001329738	79002		NM_024038	ENSG00000123144	TRIR	C19orf43|TERCIR|fSAP18	telomerase RNA component interacting RNase	protein-coding
144719	chr20	36566121	36566550	+	0	NA	intron (NR_109939, intron 2 of 4)	L1M4|LINE|L1	6940	NR_109939	101926987		NR_109939	ENSG00000232907	DLGAP4-AS1	CCAT7	DLGAP4 antisense RNA 1	ncRNA
172773	chr4	2929401	2929800	+	0	NA	TTS (NM_001120)	TTS (NM_001120)	4637	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
25915	chr10	11309921	11310380	+	0	NA	intron (NM_001326330, intron 9 of 12)	L1M4b|LINE|L1	34524	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
147766	chr20	62499801	62500830	+	0	NA	Intergenic	Intergenic	-24320	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
1726	chr1	5745801	5746150	+	0	NA	Intergenic	Intergenic	116766	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
58583	chr12	132449421	132450380	+	0	NA	Intergenic	L2a|LINE|L2	-40251	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
157496	chr22	45325621	45325880	+	0	NA	intron (NM_001349915, intron 3 of 7)	L2|LINE|L2	7307	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
117416	chr19	19630821	19631630	+	0	NA	intron (NM_001288998, intron 18 of 19)	intron (NM_001288998, intron 18 of 19)	-3005	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
106035	chr18	8696751	8697080	+	0	NA	intron (NR_120598, intron 1 of 1)	intron (NR_120598, intron 1 of 1)	-8641	NM_001378205	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
145522	chr20	44071671	44072030	+	0	NA	Intergenic	Intergenic	115338	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
9425	chr1	48227601	48227880	+	0	NA	intron (NM_001135181, intron 2 of 14)	intron (NM_001135181, intron 2 of 14)	5024	NM_001011547	200010		NM_001011547	ENSG00000117834	SLC5A9	SGLT4	solute carrier family 5 member 9	protein-coding
90892	chr17	2398921	2400500	+	0	NA	intron (NM_020310, intron 1 of 5)	CpG	1350	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
189672	chr5	176392451	176393350	+	0	NA	non-coding (NR_157088, exon 7 of 7)	non-coding (NR_157088, exon 7 of 7)	-3973	NM_001256539	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
151287	chr21	45500451	45501350	+	0	NA	intron (NM_001379500, intron 32 of 41)	(GT)n|Simple_repeat|Simple_repeat	22634	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
76349	chr15	74454121	74454580	+	0	NA	intron (NM_032907, intron 3 of 10)	MER90|LTR|ERV1	6810	NM_032907	84993		NM_032907	ENSG00000138629	UBL7	BMSC-UbP|TCBA1	ubiquitin like 7	protein-coding
51295	chr12	51244051	51244550	+	0	NA	TTS (NM_001136268)	TTS (NM_001136268)	5474	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
90923	chr17	2601001	2601680	+	0	NA	intron (NM_000430, intron 1 of 10)	AluSq4|SINE|Alu	7686	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
232697	chr9	136538301	136542350	+	0	NA	intron (NM_017617, intron 2 of 33)	L2b|LINE|L2	5723	NM_017617	4851		NM_017617	ENSG00000148400	NOTCH1	AOS5|AOVD1|TAN1|hN1	notch receptor 1	protein-coding
102699	chr17	76139771	76140600	+	0	NA	promoter-TSS (NR_040017)	promoter-TSS (NR_040017)	-371	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
201401	chr6	145845271	145845870	+	0	NA	intron (NR_038246, intron 2 of 2)	intron (NR_038246, intron 2 of 2)	30694	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
230941	chr9	129413041	129414730	+	0	NA	Intergenic	CpG	-74775	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
164040	chr3	53280651	53280950	+	0	NA	Intergenic	AluSz6|SINE|Alu	-24686	NM_001258028	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
51260	chr12	51049071	51049630	+	0	NA	intron (NR_147103, intron 1 of 3)	intron (NR_147103, intron 1 of 3)	1023	NR_147106	25875		NM_015416	ENSG00000050426	LETMD1	1110019O13Rik|HCCR|HCCR-1|HCCR-2|HCCR1|HCCR2|HCRR-2|SLC55A3	LETM1 domain containing 1	protein-coding
140442	chr2	233147101	233147600	+	0	NA	intron (NM_001017915, intron 8 of 26).2	intron (NM_001017915, intron 8 of 26).2	87008	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
158217	chr22	50266501	50266800	+	0	NA	intron (NM_002751, intron 7 of 11)	intron (NM_002751, intron 7 of 11)	3730	NM_002751	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
118297	chr19	35354871	35355230	+	0	NA	Intergenic	Intergenic	-3410	NM_005304	2865		NM_005304	ENSG00000185897	FFAR3	FFA3R|GPR41|GPR42	free fatty acid receptor 3	protein-coding
46470	chr11	128298101	128298680	+	0	NA	Intergenic	Intergenic	89624	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
147798	chr20	62645121	62645600	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	2857	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
38613	chr11	46332501	46334250	+	0	NA	exon (NM_201532, exon 1 of 31)	exon (NM_201532, exon 1 of 31)	449	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
224726	chr9	21578701	21579560	+	0	NA	Intergenic	Intergenic	-19332	NR_152878	554202		NR_027054	ENSG00000171889	MIR31HG	LncHIFCAR|hsa-lnc-31	MIR31 host gene	ncRNA
162077	chr3	46878671	46879280	+	0	NA	intron (NM_000316, intron 1 of 15)	intron (NM_000316, intron 1 of 15)	1254	NM_000316	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
157468	chr22	45286171	45286330	+	0	NA	intron (NM_001167574, intron 2 of 3)	intron (NM_001167574, intron 2 of 3)	1301	NM_001167574	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
3118	chr1	12344621	12344880	+	0	NA	intron (NM_018156, intron 41 of 68)	intron (NM_018156, intron 41 of 68)	114720	NM_018156	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
179002	chr4	163556171	163556330	+	0	NA	intron (NM_001166373, intron 6 of 7)	intron (NM_001166373, intron 6 of 7)	57284	NM_017923	55016		NM_017923	ENSG00000145416	MARCHF1	MARCH-I|MARCH1|RNF171	membrane associated ring-CH-type finger 1	protein-coding
97034	chr17	42314701	42315130	+	0	NA	3' UTR (NM_001384992, exon 23 of 23)	3' UTR (NM_001384992, exon 23 of 23)	26859	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
25727	chr10	9023021	9023480	+	0	NA	Intergenic	Intergenic	125261	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
84636	chr16	30712271	30712430	+	0	NA	exon (NM_006662, exon 13 of 34)	exon (NM_006662, exon 13 of 34)	1813	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
121325	chr19	46774321	46774580	+	0	NA	TTS (NM_001145145)	TTS (NM_001145145)	10364	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
42283	chr11	68312201	68313750	+	0	NA	intron (NM_002335, intron 1 of 22)	CpG	384	NM_002335	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
118122	chr19	34733421	34735300	+	0	NA	5' UTR (NM_001029997, exon 1 of 4)	5' UTR (NM_001029997, exon 1 of 4)	117	NM_001029997	339318		NM_001029997	ENSG00000197841	ZNF181	HHZ181	zinc finger protein 181	protein-coding
115365	chr19	15229801	15230000	+	0	NA	intron (NM_024794, intron 4 of 6)	AluSc8|SINE|Alu	2548	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
138439	chr2	206082221	206082550	+	0	NA	intron (NM_017759, intron 1 of 10)	intron (NM_017759, intron 1 of 10)	3789	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
30256	chr10	75116421	75116680	+	0	NA	intron (NM_144660, intron 1 of 4)	intron (NM_144660, intron 1 of 4)	4894	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
47080	chr12	607551	607650	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	2816	NM_001294345	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
208437	chr7	66846771	66847350	+	0	NA	promoter-TSS (NR_135738)	promoter-TSS (NR_135738)	-390	NR_135738	101929580		NR_135738		GTF2IP23	-	general transcription factor IIi pseudogene 23	pseudo
7814	chr1	36286801	36287000	+	0	NA	exon (NM_001321473, exon 4 of 12)	exon (NM_001321473, exon 4 of 12)	-19468	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
65815	chr14	54879021	54879280	+	0	NA	promoter-TSS (NR_036194)	promoter-TSS (NR_036194)	-957	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
100695	chr17	63830451	63830750	+	0	NA	intron (NM_001199163, intron 6 of 11)	intron (NM_001199163, intron 6 of 11)	2916	NM_001199163	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
2622	chr1	10187351	10187450	+	0	NA	Intergenic	AluSg7|SINE|Alu	-23170	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
168721	chr3	150751401	150751600	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	11669	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
226424	chr9	70566871	70567030	+	0	NA	intron (NM_206947, intron 21 of 24)	intron (NM_206947, intron 21 of 24)	-152293	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
64096	chr14	22710321	22710980	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-56038	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
42076	chr11	67493871	67494280	+	0	NA	intron (NM_001130848, intron 19 of 23)	CpG-4568	3830	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
238108	chrX	136628771	136629780	+	0	NA	Intergenic	L1ME4a|LINE|L1	-10268	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
158030	chr22	49922971	49923930	+	0	NA	non-coding (NR_104295, exon 7 of 10)	non-coding (NR_104295, exon 7 of 10)	4816	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
110338	chr19	1873201	1873830	+	0	NA	Intergenic	Intergenic	-9936	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
182004	chr5	55307101	55308600	+	0	NA	promoter-TSS (NR_144323)	promoter-TSS (NR_144323)	-139	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
194344	chr6	32871351	32872450	+	0	NA	Intergenic	L1MD1|LINE|L1	17708	NM_002800	5698		NM_002800	ENSG00000240065	PSMB9	LMP2|PRAAS3|PRAAS6|PSMB6i|RING12|beta1i	proteasome 20S subunit beta 9	protein-coding
188260	chr5	151082221	151082630	+	0	NA	intron (NM_001252390, intron 1 of 17)	intron (NM_001252390, intron 1 of 17)	-1341	NM_001252385	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
5850	chr1	26723121	26724200	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	27645	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
211397	chr7	105028101	105028800	+	0	NA	intron (NM_182931, intron 1 of 26)	AluSz6|SINE|Alu	14245	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
227073	chr9	84467251	84467350	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-98573	NM_022127	64078		NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
29288	chr10	69230851	69231450	+	0	NA	intron (NM_025130, intron 2 of 17)	intron (NM_025130, intron 2 of 17)	1340	NR_120648	101928994		NR_120648	ENSG00000229261	LOC101928994	-	uncharacterized LOC101928994	ncRNA
18445	chr1	161528671	161529030	+	0	NA	Intergenic	Intergenic	4310	NM_002155	3310		NM_002155	ENSG00000173110	HSPA6	HSP70B'	heat shock protein family A (Hsp70) member 6	protein-coding
235183	chrX	41329921	41330750	+	0	NA	Intergenic	Intergenic	-2973	NR_126093	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
167179	chr3	128123371	128125100	+	0	NA	promoter-TSS (NM_001319084)	promoter-TSS (NM_001319084)	-423	NM_003707	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
208896	chr7	73850371	73850730	+	0	NA	Intergenic	Intergenic	-8034	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
120058	chr19	42067551	42068480	+	0	NA	promoter-TSS (NM_001330519)	promoter-TSS (NM_001330519)	-462	NM_001330519	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
182331	chr5	59098801	59100000	+	0	NA	intron (NM_001364603, intron 5 of 15)	intron (NM_001364603, intron 5 of 15)	-59924	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
53130	chr12	57839871	57840550	+	0	NA	intron (NM_005730, intron 1 of 7)	MER5A|DNA|hAT-Charlie	6519	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
14309	chr1	143816201	143816650	+	0	NA	Intergenic	Intergenic	22825	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
20351	chr1	197909421	197909800	+	0	NA	Intergenic	Intergenic	-2895	NM_001014434	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
29939	chr10	73413101	73414630	+	0	NA	intron (NM_001156, intron 1 of 12)	CpG	193	NM_001156	310		NM_001156	ENSG00000138279	ANXA7	ANX7|SNX|SYNEXIN	annexin A7	protein-coding
24685	chr1	247206151	247206250	+	0	NA	Intergenic	Intergenic	-4140	NR_037480	100500849		NR_037480	ENSG00000283881	MIR3916	mir-3916	microRNA 3916	ncRNA
234976	chrX	39440171	39440730	+	0	NA	Intergenic	Intergenic	-48676	NR_110385	101927449		NR_110385	ENSG00000236747	LINC01282	-	long intergenic non-protein coding RNA 1282	ncRNA
148304	chr20	63732121	63732680	+	0	NA	intron (NM_181485, intron 2 of 6)	(GT)n|Simple_repeat|Simple_repeat	-3301	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
149695	chr21	33951451	33952500	+	0	NA	intron (NR_038883, intron 2 of 2)	L1MEd|LINE|L1	20761	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
13657	chr1	116551021	116552080	+	0	NA	intron (NR_026665, intron 1 of 5)	Tigger1|DNA|TcMar-Tigger	8561	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
213871	chr7	142344871	142345030	+	0	NA	Intergenic	Intergenic	-72701	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
105114	chr17	82212051	82213100	+	0	NA	intron (NM_001316321, intron 1 of 14)	CpG	267	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
233823	chrX	1480901	1482850	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-28113	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
97817	chr17	44852301	44852700	+	0	NA	exon (NM_001142605, exon 25 of 27)	exon (NM_001142605, exon 25 of 27)	4617	NM_016438	51751		NM_016438	ENSG00000131097	HIGD1B	CLST11240|CLST11240-15	HIG1 hypoxia inducible domain family member 1B	protein-coding
26053	chr10	12547301	12547950	+	0	NA	intron (NM_001351032, intron 3 of 11)	intron (NM_001351032, intron 3 of 11)	-31128	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
165262	chr3	75362551	75362650	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	72515	NR_024241	692099		NR_024241	ENSG00000291223	FAM86DP	FAM86D	family with sequence similarity 86 member D, pseudogene	pseudo
148031	chr20	63175371	63175530	+	0	NA	Intergenic	CpG	-3050	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
60996	chr13	46896771	46897130	+	0	NA	5' UTR (NM_001165947, exon 1 of 3)	5' UTR (NM_001165947, exon 1 of 3)	103	NM_000621	3356		NM_000621	ENSG00000102468	HTR2A	5-HT2A|HTR2	5-hydroxytryptamine receptor 2A	protein-coding
192524	chr6	25038551	25039550	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	3238	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
136886	chr2	189302701	189302900	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-123039	NM_000393	1290		NM_000393	ENSG00000204262	COL5A2	EDSC|EDSCL2	collagen type V alpha 2 chain	protein-coding
124673	chr2	3312821	3313080	+	0	NA	intron (NM_001330530, intron 3 of 9)	MER53|DNA|hAT	64868	NM_003310	7260		NM_003310	ENSG00000032389	EIPR1	EIPR-1|TSSC1	EARP complex and GARP complex interacting protein 1	protein-coding
95170	chr17	35162451	35162750	+	0	NA	intron (NM_173167, intron 7 of 18)	AluSq2|SINE|Alu	14336	NM_173167	146862		NM_173167	ENSG00000141161	UNC45B	CMYA4|CTRCT43|MFM11|SMUNC45|UNC-45B|UNC45	unc-45 myosin chaperone B	protein-coding
234588	chrX	19776451	19777550	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	22773	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
96991	chr17	42279951	42280050	+	0	NA	Intergenic	Intergenic	-3609	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
1247	chr1	2292201	2292650	+	0	NA	intron (NM_003036, intron 1 of 6)	L2c|LINE|L2	60236	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
204222	chr7	2530301	2531710	+	0	NA	Intergenic	Intergenic	3931	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
182837	chr5	69271401	69271700	+	0	NA	intron (NR_136690, intron 8 of 10)	AluJb|SINE|Alu	36664	NR_136690	1022		NM_001799	ENSG00000134058	CDK7	CAK|CAK1|CDKN7|HCAK|MO15|STK1|p39MO15	cyclin dependent kinase 7	protein-coding
34563	chr10	133159821	133160650	+	0	NA	promoter-TSS (NM_152643)	promoter-TSS (NM_152643)	16	NM_152643	85442		NM_152643	ENSG00000171798	KNDC1	C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND	kinase non-catalytic C-lobe domain containing 1	protein-coding
26786	chr10	23158071	23158500	+	0	NA	Intergenic	Intergenic	-34027	NM_178161	256297		NM_178161	ENSG00000168267	PTF1A	PACA|PAGEN2|PTF1-p48|bHLHa29|p48	pancreas associated transcription factor 1a	protein-coding
46609	chr11	128574521	128574780	+	0	NA	intron (NM_001143820, intron 1 of 9)	intron (NM_001143820, intron 1 of 9)	12908	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
61764	chr13	74280571	74280930	+	0	NA	Intergenic	Intergenic	49306	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
211891	chr7	111249021	111249300	+	0	NA	intron (NM_032549, intron 3 of 5)	L1HS|LINE|L1	158033	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
115957	chr19	16874121	16875250	+	0	NA	intron (NM_001297595, intron 14 of 18)	(CTGGT)n|Simple_repeat|Simple_repeat	11411	NM_001297597	23309		NM_015260	ENSG00000127511	SIN3B	-	SIN3 transcription regulator family member B	protein-coding
74240	chr15	56884251	56885150	+	0	NA	Intergenic	AluJr|SINE|Alu	-33390	NM_001322151	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
225980	chr9	41233351	41233650	+	0	NA	promoter-TSS (NR_039688).2	promoter-TSS (NR_039688).2	-255	NR_039688	100616184		NR_039688	ENSG00000276029	MIR4477A	-	microRNA 4477a	ncRNA
180767	chr5	32160821	32161900	+	0	NA	intron (NM_022130, intron 1 of 3)	AluJo|SINE|Alu	12959	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
51486	chr12	52084501	52084700	+	0	NA	promoter-TSS (NR_120438)	promoter-TSS (NR_120438)	-146	NR_120439	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
197724	chr6	87066421	87066830	+	0	NA	Intergenic	Intergenic	28481	NM_001252383	1081		NM_000735	ENSG00000135346	CGA	CG-ALPHA|FSHA|GPA1|GPHA1|GPHa|HCG|LHA|TSHA	glycoprotein hormones, alpha polypeptide	protein-coding
14107	chr1	120924471	120925230	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-10736	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
185439	chr5	131224171	131225000	+	0	NA	Intergenic	L2|LINE|L2	-39468	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
137118	chr2	191008351	191008450	+	0	NA	intron (NM_139266, intron 4 of 22)	intron (NM_139266, intron 4 of 22)	5771	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
216319	chr8	12755101	12756600	+	0	NA	promoter-TSS (NR_138256).2	promoter-TSS (NR_138256).2	-324	NM_152271	91694		NM_152271	ENSG00000154359	LONRF1	RNF191	LON peptidase N-terminal domain and ring finger 1	protein-coding
134924	chr2	151287301	151287700	+	0	NA	intron (NM_004688, intron 1 of 7)	intron (NM_004688, intron 1 of 7)	2168	NM_004688	9111		NM_004688	ENSG00000123609	NMI	-	N-myc and STAT interactor	protein-coding
209185	chr7	75400671	75400830	+	0	NA	intron (NM_001317815, intron 2 of 4).2	intron (NM_001317815, intron 2 of 4).2	2608	NM_001317815	378108		NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
162226	chr3	47059401	47059600	+	0	NA	intron (NR_146158, intron 15 of 21)	AluSx4|SINE|Alu	47958	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
213377	chr7	135952021	135952280	+	0	NA	intron (NM_001128619, intron 1 of 3)	L2a|LINE|L2	25209	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
233241	chr9	137256851	137257380	+	0	NA	intron (NM_015456, intron 4 of 12)	intron (NM_015456, intron 4 of 12)	1788	NM_015456	25920		NM_015456	ENSG00000188986	NELFB	COBRA1|NELF-B	negative elongation factor complex member B	protein-coding
115607	chr19	16068151	16068450	+	0	NA	intron (NM_001367836, intron 1 of 8)	AluSx1|SINE|Alu	762	NM_001367836	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
177240	chr4	108625321	108625730	+	0	NA	TTS (NM_001319236)	TTS (NM_001319236)	4896	NM_001319234	6164		NM_000995	ENSG00000109475	RPL34	L34|eL34	ribosomal protein L34	protein-coding
135260	chr2	159735921	159736250	+	0	NA	intron (NM_001282807, intron 1 of 8)	AluJr|SINE|Alu	2121	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
5380	chr1	25434871	25435950	+	0	NA	intron (NM_001282564, intron 1 of 8)	intron (NM_001282564, intron 1 of 8)	4513	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
96782	chr17	41790151	41790250	+	0	NA	Intergenic	Intergenic	-3432	NM_001352776	3728		NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PG|PKGB	junction plakoglobin	protein-coding
80163	chr16	2109171	2109330	+	0	NA	exon (NM_000296, exon 15 of 46)	exon (NM_000296, exon 15 of 46)	-2497	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
49816	chr12	31985021	31985280	+	0	NA	exon (NM_018169, exon 4 of 6)	exon (NM_018169, exon 4 of 6)	25735	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
79517	chr16	803421	804000	+	0	NA	Intergenic	Intergenic	-1733	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
78092	chr15	90242021	90242480	+	0	NA	3' UTR (NM_001322811, exon 5 of 5)	3' UTR (NM_001322811, exon 5 of 5)	-7282	NR_104604								
94393	chr17	28957971	28958330	+	0	NA	intron (NM_178860, intron 10 of 16)	intron (NM_178860, intron 10 of 16)	-6632	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
142598	chr20	5578221	5578480	+	0	NA	intron (NM_019593, intron 8 of 19)	intron (NM_019593, intron 8 of 19)	32656	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
66352	chr14	61455721	61456000	+	0	NA	intron (NM_006255, intron 7 of 13)	intron (NM_006255, intron 7 of 13)	114334	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
124774	chr2	7203001	7203280	+	0	NA	Intergenic	Intergenic	-125260	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
55963	chr12	110046271	110046580	+	0	NA	intron (NR_148517, intron 1 of 2)	AluSc|SINE|Alu	2222	NR_148516								
86735	chr16	67623901	67624100	+	0	NA	intron (NM_006565, intron 7 of 11)	AluSc8|SINE|Alu	-21144	NM_001317026	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
13912	chr1	119987371	119988350	+	0	NA	intron (NM_001200001, intron 4 of 21)	intron (NM_001200001, intron 4 of 21)	81802	NM_024408	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
202018	chr6	152701471	152701830	+	0	NA	intron (NM_001371626, intron 1 of 2)	intron (NM_001371626, intron 1 of 2)	3704	NM_001371626	80177		NM_025107	ENSG00000120279	MYCT1	MTLC	MYC target 1	protein-coding
72175	chr15	29135971	29136330	+	0	NA	intron (NM_015307, intron 7 of 10)	MIRb|SINE|MIR	65492	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
102970	chr17	76715701	76716980	+	0	NA	3' UTR (NM_001081461, exon 7 of 7)	3' UTR (NM_001081461, exon 7 of 7)	-5375	NM_001008529	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
126476	chr2	28378371	28378530	+	0	NA	Intergenic	Intergenic	-14408	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
227346	chr9	89466771	89467700	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	12655	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
4131	chr1	19329221	19330130	+	0	NA	TTS (NM_001287531)	TTS (NM_001287531)	17349	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
52684	chr12	56467051	56467350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1378	NM_207344	283377		NM_207344	ENSG00000176422	SPRYD4	-	SPRY domain containing 4	protein-coding
182496	chr5	63963251	63963350	+	0	NA	promoter-TSS (NM_000524)	promoter-TSS (NM_000524)	-855	NM_000524	3350		NM_000524	ENSG00000178394	HTR1A	5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD	5-hydroxytryptamine receptor 1A	protein-coding
180510	chr5	14364221	14365080	+	0	NA	exon (NM_007118, exon 15 of 57)	exon (NM_007118, exon 15 of 57)	-99333	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
197623	chr6	83067491	83069180	+	0	NA	intron (NM_015018, intron 1 of 38)	intron (NM_015018, intron 1 of 38)	669	NM_015018	23033		NM_015018	ENSG00000083097	DOP1A	DOP1|DOPEY1|KIAA1117|dJ202D23.2	DOP1 leucine zipper like protein A	protein-coding
30776	chr10	84340671	84342030	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	12761	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
155872	chr22	39493071	39493900	+	0	NA	Intergenic	Intergenic	6261	NM_001098270	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
178829	chr4	153572571	153572950	+	0	NA	intron (NM_015196, intron 7 of 34)	L1MB3|LINE|L1	-67408	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
31078	chr10	89086151	89086650	+	0	NA	Intergenic	Intergenic	-22989	NR_039827	100616192		NR_039827	ENSG00000265375	MIR4679-2	-	microRNA 4679-2	ncRNA
53721	chr12	68621421	68621850	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	5740	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
193842	chr6	31530821	31531480	+	0	NA	TTS (NM_001011700).5	TTS (NM_001011700).5	2188	NM_001011700	401250		NM_001011700	ENSG00000204511	MCCD1	-	mitochondrial coiled-coil domain 1	protein-coding
9477	chr1	50967801	50969100	+	0	NA	promoter-TSS (NM_001262)	promoter-TSS (NM_001262)	-245	NM_001262	1031		NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	cyclin dependent kinase inhibitor 2C	protein-coding
121541	chr19	47242401	47243560	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10313	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
147284	chr20	57600951	57601250	+	0	NA	Intergenic	L2b|LINE|L2	19326	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
142566	chr20	5267171	5267750	+	0	NA	Intergenic	Intergenic	49494	NM_144773	128674		NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
150710	chr21	43725571	43725730	+	0	NA	intron (NM_003681, intron 1 of 10)	AluSx|SINE|Alu	6521	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
164454	chr3	59511501	59511700	+	0	NA	Intergenic	LTR12|LTR|ERV1	146897	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
110790	chr19	2447471	2447830	+	0	NA	intron (NM_032737, intron 1 of 11)	intron (NM_032737, intron 1 of 11)	9309	NM_032737	84823		NM_032737	ENSG00000176619	LMNB2	EPM9|LAMB2|LMN2|MCPH27	lamin B2	protein-coding
29106	chr10	68335771	68336380	+	0	NA	intron (NM_001322437, intron 1 of 9)	intron (NM_001322437, intron 1 of 9)	-3147	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
16200	chr1	153849601	153850150	+	0	NA	intron (NM_020699, intron 1 of 10)	AluSx|SINE|Alu	55928	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
234949	chrX	38807001	38808080	+	0	NA	Intergenic	MIR|SINE|MIR	-3657	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
104947	chr17	81941301	81942250	+	0	NA	5' UTR (NM_001145113, exon 3 of 3)	5' UTR (NM_001145113, exon 3 of 3)	-4447	NM_001282280	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
177573	chr4	119409221	119409750	+	0	NA	non-coding (NR_037596, exon 3 of 3)	non-coding (NR_037596, exon 3 of 3)	1175	NR_037596	401149		NR_037596		LINC01061	KIKAT	long intergenic non-protein coding RNA 1061	ncRNA
75314	chr15	65299371	65299530	+	0	NA	Intergenic	AluSx|SINE|Alu	3399	NR_002756	26831		NR_002756	ENSG00000199568	RNU5A-1	RNU5|RNU5A|RNU5C|U5A|U5B1	RNA, U5A small nuclear 1	snRNA
166756	chr3	122101251	122102150	+	0	NA	intron (NM_001206924, intron 2 of 5)	intron (NM_001206924, intron 2 of 5)	23851	NM_176892	942		NM_006889	ENSG00000114013	CD86	B7-2|B7.2|B70|CD28LG2|LAB72	CD86 molecule	protein-coding
218406	chr8	47361601	47362000	+	0	NA	intron (NR_104581, intron 5 of 16)	intron (NR_104581, intron 5 of 16)	100862	NM_001080394	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
183151	chr5	75055571	75055730	+	0	NA	Intergenic	AluSx|SINE|Alu	-3092	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
107481	chr18	47164471	47164630	+	0	NA	intron (NM_016097, intron 1 of 2)	AluJb|SINE|Alu	11814	NM_016097	51124		NM_016097	ENSG00000134049	IER3IP1	HSPC039|MEDS|PRO2309	immediate early response 3 interacting protein 1	protein-coding
140711	chr2	234393421	234393880	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	60945	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
116289	chr19	17749801	17750230	+	0	NA	intron (NR_169231, intron 1 of 25)	intron (NR_169231, intron 1 of 25)	-1462	NR_169256	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
76147	chr15	72636551	72637300	+	0	NA	promoter-TSS (NR_135684)	promoter-TSS (NR_135684)	30	NR_135684	102723640		NR_135684	ENSG00000259783	LINC02259	-	long intergenic non-protein coding RNA 2259	ncRNA
110461	chr19	2009021	2009480	+	0	NA	intron (NM_017797, intron 1 of 8)	AluSx3|SINE|Alu	6464	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
22629	chr1	223697551	223697650	+	0	NA	Intergenic	AluSp|SINE|Alu	-3993	NM_001146068	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
219067	chr8	65814771	65814930	+	0	NA	intron (NM_001242318, intron 1 of 12)	AluSx1|SINE|Alu	-25793	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
182468	chr5	62337321	62337580	+	0	NA	intron (NM_001243952, intron 2 of 20)	AluSx|SINE|Alu	31244	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
167146	chr3	127964651	127964770	+	0	NA	intron (NM_207335, intron 5 of 5)	intron (NM_207335, intron 5 of 5)	49478	NM_001370224	166348		NM_207335	ENSG00000187715	KBTBD12	KLHDC6	kelch repeat and BTB domain containing 12	protein-coding
28227	chr10	45418651	45419630	+	0	NA	intron (NM_001256153, intron 4 of 13).2	CpG	33981	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
32514	chr10	102775951	102776450	+	0	NA	promoter-TSS (NM_017787)	promoter-TSS (NM_017787)	-21	NM_017787	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
56507	chr12	116356151	116356650	+	0	NA	Intergenic	AluJb|SINE|Alu	71918	NR_039683	100616309		NR_039683	ENSG00000264037	MIR4472-2	-	microRNA 4472-2	ncRNA
53883	chr12	70283951	70284430	+	0	NA	intron (NM_001199302, intron 3 of 16)	AluSp|SINE|Alu	40476	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
150567	chr21	43109171	43109600	+	0	NA	Intergenic	Intergenic	-1779	NM_001320651	102724594		NM_001320646	ENSG00000275895	LOC102724594	U2AF1L5	U2 small nuclear RNA auxiliary factor 1 like 5	protein-coding
134042	chr2	131114921	131115250	+	0	NA	intron (NM_001309448, intron 1 of 6)	THE1B|LTR|ERVL-MaLR	10238	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
172120	chr4	1170251	1170350	+	0	NA	intron (NM_001128325, intron 6 of 6)	intron (NM_001128325, intron 6 of 6)	2283	NM_012445	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
88681	chr16	85734801	85736080	+	0	NA	intron (NR_161452, intron 1 of 4)	intron (NR_161452, intron 1 of 4)	6260	NR_031731	100302261		NR_031731	ENSG00000283416	MIR1910	MIRN1910|hsa-mir-1910|mir-1910	microRNA 1910	ncRNA
67656	chr14	73094701	73095500	+	0	NA	intron (NM_021239, intron 6 of 18)	AluSx3|SINE|Alu	36566	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
119264	chr19	39514621	39516230	+	0	NA	promoter-TSS (NR_146916)	promoter-TSS (NR_146916)	2	NR_146916	348303		NM_182704	ENSG00000186838	SELENOV	SELV	selenoprotein V	protein-coding
99102	chr17	49180301	49180800	+	0	NA	Intergenic	Intergenic	28831	NM_031498	2793		NM_031498	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG9|GNGT8|HG3I	G protein subunit gamma transducin 2	protein-coding
147330	chr20	58174171	58174530	+	0	NA	Intergenic	L1ME3A|LINE|L1	23448	NM_178456	128602		NM_178456	ENSG00000124237	CIMIP1	C20orf85|LLC1|bA196N14.1	ciliary microtubule inner protein 1	protein-coding
153853	chr22	30208571	30208730	+	0	NA	Intergenic	Intergenic	-30544	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
229502	chr9	122262501	122262950	+	0	NA	intron (NR_027125, intron 1 of 6)	AluSz|SINE|Alu	-1878	NM_001173512	92399		NM_138777	ENSG00000148187	MRRF	MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding
40361	chr11	63978721	63978980	+	0	NA	Intergenic	Intergenic	4230	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
204197	chr7	2499671	2499830	+	0	NA	Intergenic	Intergenic	-12779	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
216013	chr8	9006751	9006850	+	0	NA	intron (NM_001354635, intron 1 of 6)	intron (NM_001354635, intron 1 of 6)	3686	NM_001354635	90459		NM_153332	ENSG00000104626	ERI1	3'HEXO|HEXO|HXAL|SEMDGC|SEMDGS|THEX1	exoribonuclease 1	protein-coding
134199	chr2	134450571	134451150	+	0	NA	3' UTR (NM_002410, exon 16 of 16)	3' UTR (NM_002410, exon 16 of 16)	196788	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
98150	chr17	46027351	46028000	+	0	NA	non-coding (NR_165166, exon 10 of 10)	non-coding (NR_165166, exon 10 of 10)	28425	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
157331	chr22	44634721	44635380	+	0	NA	Intergenic	L2b|LINE|L2	-9631	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
109711	chr19	1068001	1070830	+	0	NA	intron (NM_012292, intron 2 of 22)	intron (NM_012292, intron 2 of 22)	-1795	NM_001282335	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
157004	chr22	42515771	42517200	+	0	NA	intron (NM_015703, intron 2 of 6)	AluSx1|SINE|Alu	3311	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
184335	chr5	96951151	96951450	+	0	NA	intron (NM_005575, intron 1 of 17)	AluY|SINE|Alu	-7133	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
46063	chr11	122742401	122742600	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	86778	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
206509	chr7	33707251	33707850	+	0	NA	Intergenic	Intergenic	-18431	NR_165282	55025		NM_017937	ENSG00000173862	FLJ20712	-	uncharacterized FLJ20712	ncRNA
136507	chr2	177241001	177241230	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	14895	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
64326	chr14	23663071	23663630	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	26986	NM_005794	10202		NM_005794	ENSG00000100867	DHRS2	HEP27|SDR25C1	dehydrogenase/reductase 2	protein-coding
213520	chr7	139077451	139077700	+	0	NA	intron (NM_020119, intron 5 of 12)	intron (NM_020119, intron 5 of 12)	32145	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
141834	chr20	421621	421880	+	0	NA	intron (NM_006462, intron 6 of 10)	L2b|LINE|L2	13451	NR_136659	10616		NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RANBP2-type and C3HC4-type zinc finger containing 1	protein-coding
103021	chr17	76995321	76995980	+	0	NA	Intergenic	LTR78|LTR|ERV1	-26451	NR_136417	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
138125	chr2	202294501	202295330	+	0	NA	intron (NM_015934, intron 9 of 14)	AluSg7|SINE|Alu	1864	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
146625	chr20	50178551	50178650	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	6030	NR_109943	101927541		NR_109943	ENSG00000231742	LINC01273	-	long intergenic non-protein coding RNA 1273	ncRNA
177342	chr4	110050001	110050280	+	0	NA	3' UTR (NM_001130721, exon 5 of 5)	3' UTR (NM_001130721, exon 5 of 5)	137257	NM_001178131	1950		NM_001963	ENSG00000138798	EGF	HOMG4|URG	epidermal growth factor	protein-coding
135362	chr2	160417651	160418200	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	-10043	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
29632	chr10	71813301	71813500	+	0	NA	intron (NM_001171933, intron 22 of 22)	intron (NM_001171933, intron 22 of 22)	1517	NM_001171935	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
81562	chr16	9126051	9126830	+	0	NA	Intergenic	Intergenic	34796	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
5336	chr1	25253351	25253650	+	0	NA	intron (NR_135788, intron 1 of 3)	AluSp|SINE|Alu	-5981	NR_135143	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
82166	chr16	14916871	14917680	+	0	NA	intron (NR_146231, intron 1 of 38)	intron (NR_146231, intron 1 of 38)	5513	NR_146231	109951030		NR_146231		PKD1P3-NPIPA1	-	PKD1P3-NPIPA1 readthrough	pseudo
232374	chr9	135906471	135906700	+	0	NA	intron (NM_015447, intron 1 of 16)	intron (NM_015447, intron 1 of 16)	961	NM_015447	157922		NM_015447	ENSG00000130559	CAMSAP1	CDCBM12	calmodulin regulated spectrin associated protein 1	protein-coding
220291	chr8	98040901	98042130	+	0	NA	TTS (NM_000989)	TTS (NM_000989)	702	NR_002581	26775		NR_002581	ENSG00000207067	SNORA72	RNU72|U72	small nucleolar RNA, H/ACA box 72	snoRNA
11646	chr1	91791271	91791430	+	0	NA	intron (NR_036634, intron 4 of 17)	Tigger15a|DNA|TcMar-Tigger	94801	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
56120	chr12	110779051	110779400	+	0	NA	Intergenic	Intergenic	-36334	NM_002710	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
14671	chr1	145816801	145817380	+	0	NA	intron (NM_014455, intron 1 of 8)	intron (NM_014455, intron 1 of 8)	7005	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
165736	chr3	105527921	105528280	+	0	NA	intron (NM_001243281, intron 3 of 13)	intron (NM_001243281, intron 3 of 13)	161191	NM_001627	214		NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
139053	chr2	218710401	218711580	+	0	NA	5' UTR (NM_014640, exon 1 of 20)	5' UTR (NM_014640, exon 1 of 20)	155	NM_014640	9654		NM_014640	ENSG00000135912	TTLL4	-	tubulin tyrosine ligase like 4	protein-coding
216278	chr8	12516421	12516950	+	0	NA	intron (NR_040091, intron 5 of 6)	MLT1O|LTR|ERVL-MaLR	79672	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
86008	chr16	57474751	57475080	+	0	NA	exon (NM_018110, exon 6 of 9)	exon (NM_018110, exon 6 of 9)	4842	NM_001369621	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
32773	chr10	104339651	104339750	+	0	NA	Intergenic	Intergenic	-1235	NM_001272013	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
79559	chr16	975151	975630	+	0	NA	TTS (NR_036442)	TTS (NR_036442)	-4391	NM_001352020	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
192946	chr6	27807121	27808650	+	0	NA	promoter-TSS (NM_003509)	promoter-TSS (NM_003509)	44	NM_003519	8340		NM_003519	ENSG00000185130	H2BC13	H2B/c|H2BFC|HIST1H2BL|dJ97D16.4	H2B clustered histone 13	protein-coding
155245	chr22	37949151	37949450	+	0	NA	intron (NM_001207062, intron 2 of 5)	AluSz6|SINE|Alu	4301	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
77946	chr15	89338351	89338450	+	0	NA	Intergenic	Intergenic	-3576	NM_002693	5428		NM_002693	ENSG00000140521	POLG	MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE	DNA polymerase gamma, catalytic subunit	protein-coding
142178	chr20	2870251	2871150	+	0	NA	intron (NM_002836, intron 5 of 27)	intron (NM_002836, intron 5 of 27)	-2781	NM_001385307	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
41594	chr11	66363671	66364450	+	0	NA	TTS (NR_135761)	TTS (NR_135761)	7700	NM_001532	3177		NM_001532	ENSG00000174669	SLC29A2	DER12|ENT2|HNP36|hENT2	solute carrier family 29 member 2	protein-coding
179887	chr5	663371	663730	+	0	NA	non-coding (NR_164122, exon 14 of 16)	non-coding (NR_164122, exon 14 of 16)	29802	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
99636	chr17	50613421	50613880	+	0	NA	intron (NR_046054, intron 26 of 35)	intron (NR_046054, intron 26 of 35)	-21231	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
81291	chr16	4678601	4679130	+	0	NA	intron (NM_001142291, intron 11 of 15)	intron (NM_001142291, intron 11 of 15)	7547	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
85299	chr16	49350651	49350750	+	0	NA	Intergenic	Intergenic	-23104	NM_144602	123970		NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
192690	chr6	26282471	26282630	+	0	NA	Intergenic	L2b|LINE|L2	2984	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
2323	chr1	9131851	9131950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2798	NM_024980	80045		NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
52810	chr12	56794971	56795350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	31836	NM_003725	8630		NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid 17-beta dehydrogenase 6	protein-coding
204320	chr7	2710401	2710800	+	0	NA	intron (NM_001321766, intron 6 of 6)	intron (NM_001321766, intron 6 of 6)	22398	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
221308	chr8	123030371	123030530	+	0	NA	intron (NM_001330601, intron 1 of 6)	MIRb|SINE|MIR	-4678	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
191413	chr6	9971351	9971530	+	0	NA	Intergenic	L1PA2|LINE|L1	-433062	NR_145448	109729173		NR_145448	ENSG00000285278	TFAP2A-AS2	HIPSTR	TFAP2A antisense RNA 2	ncRNA
20818	chr1	201311471	201311630	+	0	NA	intron (NM_001005337, intron 2 of 13)	intron (NM_001005337, intron 2 of 13)	28044	NM_001005337	5317		NM_000299	ENSG00000081277	PKP1	B6P|EDSFS	plakophilin 1	protein-coding
229494	chr9	122220351	122220650	+	0	NA	intron (NM_199160, intron 4 of 8)	CpG	1240	NM_001242335	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
180048	chr5	1075101	1075500	+	0	NA	intron (NM_006598, intron 15 of 23).2	intron (NM_006598, intron 15 of 23).2	-12326	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
172397	chr4	1783321	1784030	+	0	NA	Intergenic	Intergenic	-9618	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
145026	chr20	38037471	38037630	+	0	NA	intron (NM_021215, intron 1 of 6)	intron (NM_021215, intron 1 of 6)	3804	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
130820	chr2	87062651	87062950	+	0	NA	intron (NR_026846, intron 1 of 10)	intron (NR_026846, intron 1 of 10)	13613	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
20111	chr1	192480821	192481080	+	0	NA	Intergenic	Intergenic	-94823	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
195408	chr6	36836271	36836930	+	0	NA	intron (NR_164866, intron 1 of 7)	intron (NR_164866, intron 1 of 7)	2844	NM_020939	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
162799	chr3	49104251	49105430	+	0	NA	promoter-TSS (NM_005051)	promoter-TSS (NM_005051)	-83	NM_001272073	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
225313	chr9	34589321	34590430	+	0	NA	promoter-TSS (NM_001842)	promoter-TSS (NM_001842)	-151	NM_001842	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
12444	chr1	107648801	107649400	+	0	NA	intron (NM_001079874, intron 2 of 9)	intron (NM_001079874, intron 2 of 9)	39399	NM_001079874	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
112041	chr19	5131561	5132250	+	0	NA	exon (NM_015015, exon 13 of 23)	exon (NM_015015, exon 13 of 23)	162792	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
202540	chr6	158633421	158633700	+	0	NA	non-coding (NR_164859, exon 17 of 17)	non-coding (NR_164859, exon 17 of 17)	11183	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
198483	chr6	106273071	106273430	+	0	NA	intron (NM_001286111, intron 2 of 4)	intron (NM_001286111, intron 2 of 4)	43016	NR_104402	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
4072	chr1	19069871	19070230	+	0	NA	Intergenic	MIRb|SINE|MIR	-113374	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
204577	chr7	5282651	5284300	+	0	NA	intron (NM_153247, intron 1 of 10)	CpG	532	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
161108	chr3	38185621	38185880	+	0	NA	intron (NM_005109, intron 2 of 17)	AluJb|SINE|Alu	20213	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
34665	chr10	133347321	133347950	+	0	NA	intron (NM_145202, intron 1 of 4)	intron (NM_145202, intron 1 of 4)	262	NM_145202	118471		NM_145202	ENSG00000165828	PRAP1	PRO1195|UPA	proline rich acidic protein 1	protein-coding
235963	chrX	53481171	53481550	+	0	NA	Intergenic	LTR1|LTR|ERV1	-46984	NM_001037811	3028		NM_004493	ENSG00000072506	HSD17B10	17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1	hydroxysteroid 17-beta dehydrogenase 10	protein-coding
33815	chr10	123445701	123445900	+	0	NA	Intergenic	Intergenic	-220555	NM_153442	2849		NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding
134579	chr2	144240771	144241300	+	0	NA	intron (NM_001354354, intron 1 of 12)	MER5B|DNA|hAT-Charlie	-3696	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
40108	chr11	62810971	62812100	+	0	NA	intron (NM_001244666, intron 10 of 10)	L2b|LINE|L2	-6095	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
174895	chr4	48944421	48945140	+	0	NA	Intergenic	LTR50|LTR|ERVL	-37952	NM_152398	132299		NM_152398	ENSG00000145247	OCIAD2	-	OCIA domain containing 2	protein-coding
147232	chr20	57406051	57407180	+	0	NA	intron (NM_001291780, intron 4 of 4)	intron (NM_001291780, intron 4 of 4)	-13559	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
54227	chr12	80083871	80084530	+	0	NA	Intergenic	L1PA7|LINE|L1	-15337	NM_001378609	283310		NM_173591	ENSG00000165899	OTOGL	C12orf64|DFNB84B	otogelin like	protein-coding
8925	chr1	44003721	44003980	+	0	NA	intron (NR_048548, intron 4 of 12)	intron (NR_048548, intron 4 of 12)	12003	NM_001349128	149473		NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding
221971	chr8	129984051	129984830	+	0	NA	intron (NM_001353269, intron 1 of 10)	MIR3|SINE|MIR	24013	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
217645	chr8	30071151	30071930	+	0	NA	intron (NM_001284239, intron 1 of 4)	L1MB8|LINE|L1	11524	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
40460	chr11	64220321	64221150	+	0	NA	intron (NM_001382363, intron 11 of 13)	intron (NM_001382363, intron 11 of 13)	5134	NM_001160393	83707		NM_031472	ENSG00000149743	TRPT1	-	tRNA phosphotransferase 1	protein-coding
116937	chr19	18842671	18844630	+	0	NA	intron (NM_001297549, intron 1 of 23)	AluSz6|SINE|Alu	11691	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
38134	chr11	35292301	35292500	+	0	NA	exon (NM_001252652, exon 8 of 12)	exon (NM_001252652, exon 8 of 12)	127158	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
39268	chr11	57781621	57781880	+	0	NA	intron (NM_001085467, intron 1 of 16)	intron (NM_001085467, intron 1 of 16)	19948	NM_001331	1500		NM_001331	ENSG00000198561	CTNND1	BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
202273	chr6	157054021	157055000	+	0	NA	intron (NM_001363725, intron 2 of 17)	MIR3|SINE|MIR	18083	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
34690	chr10	133388701	133389250	+	0	NA	exon (NM_152911, exon 5 of 7)	exon (NM_152911, exon 5 of 7)	-5182	NM_138384	92170		NM_138384	ENSG00000148824	MTG1	GTP|GTPBP7	mitochondrial ribosome associated GTPase 1	protein-coding
186459	chr5	137752971	137753500	+	0	NA	exon (NM_006805, exon 1 of 1)	exon (NM_006805, exon 1 of 1)	1128	NM_006805	10949		NM_006805	ENSG00000177733	HNRNPA0	HNRPA0	heterogeneous nuclear ribonucleoprotein A0	protein-coding
225019	chr9	33136721	33137330	+	0	NA	intron (NM_001378495, intron 1 of 5)	intron (NM_001378495, intron 1 of 5)	28333	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
122622	chr19	49811251	49811350	+	0	NA	intron (NM_025129, intron 5 of 10)	intron (NM_025129, intron 5 of 10)	1992	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
165113	chr3	71586451	71586890	+	0	NA	Intergenic	Intergenic	-2692	NM_001244810	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
15508	chr1	150478901	150479100	+	0	NA	Intergenic	AluSg|SINE|Alu	-8419	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
108621	chr18	76374651	76375530	+	0	NA	intron (NM_014643, intron 4 of 6)	L3|LINE|CR1	-116562	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
9256	chr1	46204701	46204900	+	0	NA	intron (NM_001013615, intron 1 of 1)	intron (NM_001013615, intron 1 of 1)	1466	NM_001013615	541468		NM_001013615	ENSG00000171357	LURAP1	C1orf190|LRAP35a|LRP35A	leucine rich adaptor protein 1	protein-coding
160795	chr3	32973921	32974380	+	0	NA	Intergenic	L1MEi|LINE|L1	22506	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
179506	chr4	184705651	184705950	+	0	NA	intron (NM_024629, intron 8 of 12)	L1MB2|LINE|L1	28296	NM_024629	79682		NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
211674	chr7	106287471	106288130	+	0	NA	Intergenic	Intergenic	-2817	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
60918	chr13	46183801	46185300	+	0	NA	Intergenic	Zaphod3|DNA|hAT-Tip100	-2373	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
40801	chr11	64905321	64905580	+	0	NA	intron (NM_015104, intron 24 of 40)	intron (NM_015104, intron 24 of 40)	-2995	NR_106807	102466727		NR_106807	ENSG00000274314	MIR6749	hsa-mir-6749	microRNA 6749	ncRNA
40495	chr11	64261251	64262230	+	0	NA	intron (NM_001316314, intron 16 of 31)	intron (NM_001316314, intron 16 of 31)	-8791	NM_001378076	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
193275	chr6	29974971	29975750	+	0	NA	non-coding (NR_028032, exon 1 of 3)	non-coding (NR_028032, exon 1 of 3)	245	NR_028032	10255		NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9	ncRNA
14520	chr1	144840821	144841080	+	0	NA	intron (NR_104189, intron 2 of 3).2	MLT1D|LTR|ERVL-MaLR	122779	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
148812	chr21	8255801	8257500	+	0	NA	promoter-TSS (NR_146147).2	promoter-TSS (NR_146147).2	-130	NR_145821	106632260		NR_145821	ENSG00000278189	RNA5-8SN1	RNA5-8S4	RNA, 5.8S ribosomal N1	rRNA
89023	chr16	88264201	88264400	+	0	NA	Intergenic	Intergenic	70019	NR_110944	101928880		NR_110944	ENSG00000260420	LINC02182	LA16c-444G7.2	long intergenic non-protein coding RNA 2182	ncRNA
59463	chr13	26037401	26037600	+	0	NA	Intergenic	LTR50|LTR|ERVL	14516	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
83652	chr16	28314601	28314800	+	0	NA	intron (NM_001024401, intron 1 of 3)	AluSq2|SINE|Alu	22175	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
128208	chr2	53987401	53987600	+	0	NA	intron (NM_001320587, intron 2 of 5)	L1MD|LINE|L1	16387	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
211773	chr7	107544201	107544400	+	0	NA	intron (NM_001379511, intron 5 of 20)	L1M3e|LINE|L1	19620	NM_001379516	10466		NM_006348	ENSG00000164597	COG5	CDG2I|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding
125283	chr2	10486571	10487130	+	0	NA	Intergenic	MIRc|SINE|MIR	37122	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
2116	chr1	8165671	8166200	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-42737	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
7559	chr1	35115701	35116100	+	0	NA	TTS (NM_001319955)	TTS (NM_001319955)	36515	NM_024772	79830		NM_024772	ENSG00000197056	ZMYM1	MYM	zinc finger MYM-type containing 1	protein-coding
3239	chr1	13792771	13793330	+	0	NA	intron (NM_012231, intron 8 of 9)	intron (NM_012231, intron 8 of 9)	43635	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
219748	chr8	81076951	81077430	+	0	NA	intron (NM_018440, intron 1 of 8)	MER5A1|DNA|hAT-Charlie	34878	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
94744	chr17	30801001	30801200	+	0	NA	intron (NR_073118, intron 1 of 6)	AluJr|SINE|Alu	23592	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
209357	chr7	76278501	76279100	+	0	NA	intron (NM_001291831, intron 11 of 15)	intron (NM_001291831, intron 11 of 15)	-23873	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
125912	chr2	24926321	24926580	+	0	NA	Intergenic	Intergenic	-6213	NM_001320613	109		NM_004036	ENSG00000138031	ADCY3	AC-III|AC3|BMIQ19	adenylate cyclase 3	protein-coding
139359	chr2	219689671	219689950	+	0	NA	Intergenic	Intergenic	62180	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
141882	chr20	764271	764630	+	0	NA	intron (NM_001370085, intron 3 of 5)	intron (NM_001370085, intron 3 of 5)	4050	NM_033409	113278		NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
177193	chr4	108181721	108181980	+	0	NA	Intergenic	Intergenic	9730	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
231721	chr9	131755421	131756280	+	0	NA	Intergenic	Intergenic	-15774	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
64018	chr14	22504371	22504930	+	0	NA	Intergenic	AluY|SINE|Alu	-21691	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
195064	chr6	35505421	35505880	+	0	NA	intron (NM_001289395, intron 10 of 13)	intron (NM_001289395, intron 10 of 13)	7246	NM_003322	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
38515	chr11	45889921	45890180	+	0	NA	intron (NM_005456, intron 1 of 11)	L2b|LINE|L2	4399	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
126065	chr2	25728521	25728780	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-54976	NM_001256304	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
227218	chr9	88593871	88594030	+	0	NA	Intergenic	Intergenic	58772	NM_145283	158046		NM_145283	ENSG00000130045	NXNL2	C9orf121|RDCVF2|RdCVF2L	nucleoredoxin like 2	protein-coding
92926	chr17	16682671	16683030	+	0	NA	Intergenic	Intergenic	-7391	NM_001382000	9720		NM_014695	ENSG00000170160	CCDC144A	-	coiled-coil domain containing 144A	protein-coding
213793	chr7	140902171	140903180	+	0	NA	intron (NM_001374244, intron 1 of 18)	FLAM_C|SINE|Alu	21593	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
49898	chr12	39427271	39427800	+	0	NA	intron (NM_001378440, intron 1 of 36)	intron (NM_001378440, intron 1 of 36)	15585	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
84102	chr16	29637871	29638030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-24233	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
123141	chr19	52095001	52096200	+	0	NA	5' UTR (NM_001369826, exon 1 of 5)	5' UTR (NM_001369826, exon 1 of 5)	165	NM_001352298	284371		NM_001136499	ENSG00000197608	ZNF841	-	zinc finger protein 841	protein-coding
43210	chr11	75427551	75427650	+	0	NA	intron (NM_001039548, intron 2 of 5)	intron (NM_001039548, intron 2 of 5)	3029	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
69054	chr14	91875051	91875150	+	0	NA	intron (NM_001384161, intron 11 of 12)	AluJo|SINE|Alu	-7564	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
57768	chr12	122986371	122986830	+	0	NA	intron (NM_001384662, intron 22 of 23)	intron (NM_001384662, intron 22 of 23)	6540	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
209851	chr7	90247501	90247700	+	0	NA	intron (NM_001160138, intron 1 of 22)	AluSc|SINE|Alu	2426	NM_001363438	79846		NM_024788	ENSG00000105792	CFAP69	C7orf63|FAP69|SPGF24	cilia and flagella associated protein 69	protein-coding
57539	chr12	122152171	122152330	+	0	NA	Intergenic	Intergenic	-15469	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
191295	chr6	6613871	6615480	+	0	NA	intron (NM_004271, intron 1 of 4)	intron (NM_004271, intron 1 of 4)	8151	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
143709	chr20	32247471	32247630	+	0	NA	Intergenic	L2|LINE|L2	9755	NR_031726	100302183		NR_031726	ENSG00000284125	MIR1825	MIRN1825|hsa-mir-1825	microRNA 1825	ncRNA
181551	chr5	43123951	43124500	+	0	NA	intron (NM_001330710, intron 3 of 5)	intron (NM_001330710, intron 3 of 5)	2660	NM_001330714	7690		NM_003432	ENSG00000172262	ZNF131	ZBTB35|pHZ-10	zinc finger protein 131	protein-coding
69542	chr14	96506001	96506450	+	0	NA	intron (NM_001293628, intron 1 of 21)	Charlie1|DNA|hAT-Charlie	3360	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
75154	chr15	64625671	64625900	+	0	NA	intron (NM_015042, intron 3 of 9)	AluYm1|SINE|Alu	77496	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
49191	chr12	15570801	15571430	+	0	NA	intron (NM_030671, intron 7 of 13)	MLT1O|LTR|ERVL-MaLR	24504	NM_030668	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
22922	chr1	225923671	225925300	+	0	NA	promoter-TSS (NM_013328)	promoter-TSS (NM_013328)	-145	NM_001271681	29920		NM_013328	ENSG00000143811	PYCR2	HLD10|P5CR2	pyrroline-5-carboxylate reductase 2	protein-coding
8977	chr1	44635501	44636150	+	0	NA	intron (NM_001319957, intron 6 of 13)	intron (NM_001319957, intron 6 of 13)	3857	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
963	chr1	1778071	1779470	+	0	NA	promoter-TSS (NM_023018)	promoter-TSS (NM_023018)	46	NM_001198993	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
71705	chr15	20337871	20338230	+	0	NA	Intergenic	AluSx1|SINE|Alu	55306	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
22893	chr1	225846751	225847200	+	0	NA	intron (NM_014698, intron 24 of 24)	intron (NM_014698, intron 24 of 24)	21621	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
213694	chr7	140176501	140178080	+	0	NA	promoter-TSS (NM_030647)	promoter-TSS (NM_030647)	29	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
192979	chr6	27902221	27903290	+	0	NA	Intergenic	Intergenic	9330	NM_003527	8348		NM_003527	ENSG00000274641	H2BC17	H2B.2|H2B/n|H2BFN|HIST1H2BO|dJ193B12.2	H2B clustered histone 17	protein-coding
228838	chr9	112175911	112176100	+	0	NA	promoter-TSS (NM_001282640)	promoter-TSS (NM_001282640)	-708	NM_001282643	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
86173	chr16	57807751	57808880	+	0	NA	Intergenic	Intergenic	-2204	NR_169553	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
114045	chr19	10963321	10965080	+	0	NA	intron (NM_001374457, intron 1 of 33)	intron (NM_001374457, intron 1 of 33)	3170	NM_001128849	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
83917	chr16	29014171	29014680	+	0	NA	Intergenic	AluSg|SINE|Alu	29373	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
115443	chr19	15324621	15325480	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	7489	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
21431	chr1	205343001	205343580	+	0	NA	exon (NM_018203, exon 2 of 6)	exon (NM_018203, exon 2 of 6)	13632	NM_018203	55220		NM_018203	ENSG00000162873	KLHDC8A	-	kelch domain containing 8A	protein-coding
72733	chr15	38699501	38700300	+	0	NA	non-coding (NR_160786, exon 2 of 2)	non-coding (NR_160786, exon 2 of 2)	3302	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
25439	chr10	6585251	6585550	+	0	NA	TTS (NR_036502)	TTS (NR_036502)	-4754	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
8349	chr1	40226171	40226330	+	0	NA	intron (NM_012421, intron 6 of 7)	intron (NM_012421, intron 6 of 7)	-21687	NM_001008740	127391		NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
30502	chr10	79316351	79317050	+	0	NA	TTS (NM_020338)	TTS (NM_020338)	-30769	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
151939	chr22	19111171	19111700	+	0	NA	intron (NM_001184781, intron 1 of 9)	MIRb|SINE|MIR	10977	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
24583	chr1	245311201	245311400	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	-76783	NR_151721	111216275		NR_151721	ENSG00000232192	KIF26B-AS1	-	KIF26B antisense RNA 1	ncRNA
111626	chr19	4123501	4125000	+	0	NA	promoter-TSS (NM_030662)	promoter-TSS (NM_030662)	-128	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
36766	chr11	9391221	9391480	+	0	NA	intron (NM_006391, intron 1 of 24)	AluSx3|SINE|Alu	6698	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
130571	chr2	85765421	85765830	+	0	NA	intron (NM_032827, intron 2 of 2)	intron (NM_032827, intron 2 of 2)	11634	NM_032827	84913		NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
225160	chr9	33815521	33815800	+	0	NA	Intergenic	AluJb|SINE|Alu	-1500	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
164518	chr3	63861451	63862100	+	0	NA	TTS (NR_104326)	TTS (NR_104326)	1130	NR_104326	100874039		NR_104326	ENSG00000240549	THOC7-AS1	-	THOC7 antisense RNA 1	ncRNA
211120	chr7	102524901	102525500	+	0	NA	Intergenic	L2c|LINE|L2	-7423	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
223991	chr9	2082551	2082850	+	0	NA	intron (NM_003070, intron 15 of 33)	intron (NM_003070, intron 15 of 33)	60755	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
125666	chr2	20098001	20098500	+	0	NA	Intergenic	Intergenic	-46622	NM_014713	9741		NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding
55002	chr12	96363001	96363200	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	37339	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
88799	chr16	87387701	87388950	+	0	NA	intron (NM_001282683, intron 2 of 9)	intron (NM_001282683, intron 2 of 9)	3796	NM_001282683	79791		NM_024735	ENSG00000103264	FBXO31	FBX14|FBXO14|Fbx31|MRT45|pp2386	F-box protein 31	protein-coding
110523	chr19	2073801	2074430	+	0	NA	intron (NM_130807, intron 4 of 4)	AluSc8|SINE|Alu	22211	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
159344	chr3	13110601	13111200	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	-37471	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
209965	chr7	92690571	92690930	+	0	NA	intron (NM_001145306, intron 4 of 7)	intron (NM_001145306, intron 4 of 7)	-100360	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
98310	chr17	46244771	46245160	+	0	NA	Intergenic	Intergenic	-19598	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
56731	chr12	120125721	120126180	+	0	NA	Intergenic	Intergenic	-9197	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
52458	chr12	55947371	55947730	+	0	NA	intron (NR_147026, intron 18 of 24)	L1ME4b|LINE|L1	11542	NM_001351037	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
91477	chr17	4888751	4889780	+	0	NA	intron (NM_015716, intron 12 of 30)	intron (NM_015716, intron 12 of 30)	-10271	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
276	chr1	932221	934000	+	0	NA	intron (NM_001385641, intron 4 of 13)	intron (NM_001385641, intron 4 of 13)	7379	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
14869	chr1	146413771	146414200	+	0	NA	Intergenic	Intergenic	37178	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
190975	chr6	2971051	2972350	+	0	NA	promoter-TSS (NM_001374515)	promoter-TSS (NM_001374515)	93	NM_001297700	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
13619	chr1	116405321	116405700	+	0	NA	TTS (NR_024126)	TTS (NR_024126)	13049	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
185125	chr5	119290321	119291050	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	21926	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
188362	chr5	151769271	151769430	+	0	NA	TTS (NR_132346)	TTS (NR_132346)	2158	NR_132346	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
153630	chr22	28748121	28748380	+	0	NA	intron (NM_172002, intron 4 of 5)	L2b|LINE|L2	5569	NM_001318316	150274		NM_172002	ENSG00000100209	HSCB	DNAJC20|HSC20|JAC1|SIDBA5	HscB mitochondrial iron-sulfur cluster cochaperone	protein-coding
179381	chr4	183553171	183553600	+	0	NA	Intergenic	(TGAGTG)n|Simple_repeat|Simple_repeat	47303	NM_001291959	3622		NM_001564	ENSG00000168556	ING2	ING1L|p33ING2	inhibitor of growth family member 2	protein-coding
127388	chr2	41782571	41782800	+	0	NA	Intergenic	PABL_B-int|LTR|ERV1	-94870	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
20450	chr1	198540401	198540600	+	0	NA	intron (NM_133326, intron 2 of 4)	MIRb|SINE|MIR	180	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
97859	chr17	44985851	44985950	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-17597	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
122400	chr19	49434601	49434830	+	0	NA	intron (NM_020309, intron 4 of 11)	intron (NM_020309, intron 4 of 11)	6812	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
106906	chr18	25896171	25896400	+	0	NA	Intergenic	Intergenic	194328	NM_001007559	6760		NM_005637	ENSG00000141380	SS18	SMARCL1|SSXT|SYT	SS18 subunit of BAF chromatin remodeling complex	protein-coding
83725	chr16	28550301	28550500	+	0	NA	Intergenic	AluY|SINE|Alu	-3520	NM_138414	112869		NM_138414	ENSG00000176476	SGF29	CCDC101|STAF36|TDRD29	SAGA complex associated factor 29	protein-coding
89393	chr16	88809021	88809350	+	0	NA	TTS (NM_000485)	TTS (NM_000485)	2743	NM_000485	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
62822	chr13	109764051	109764430	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	22343	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
207740	chr7	48092171	48092880	+	0	NA	intron (NM_001287426, intron 3 of 9)	intron (NM_001287426, intron 3 of 9)	3260	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
125698	chr2	20350271	20352450	+	0	NA	promoter-TSS (NM_001352930)	promoter-TSS (NM_001352930)	-376	NM_001352918	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
59070	chr13	20891551	20892230	+	0	NA	intron (NM_001372061, intron 1 of 19)	FLAM_A|SINE|Alu	10884	NM_001372061	64328		NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
44973	chr11	116879821	116880180	+	0	NA	intron (NM_001281748, intron 7 of 24)	intron (NM_001281748, intron 7 of 24)	-42050	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
62993	chr13	112308671	112309400	+	0	NA	Intergenic	Intergenic	-4432	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
170430	chr3	185825001	185826150	+	0	NA	promoter-TSS (NR_138486)	promoter-TSS (NR_138486)	-533	NR_138486	10644		NM_006548	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2	insulin like growth factor 2 mRNA binding protein 2	protein-coding
167599	chr3	129567971	129568350	+	0	NA	intron (NM_015103, intron 20 of 35)	L1ME4a|LINE|L1	19775	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
142062	chr20	2094801	2095280	+	0	NA	Intergenic	(CCTCAAT)n|Simple_repeat|Simple_repeat	-6787	NM_080836	140901		NM_080836	ENSG00000125834	STK35	CLIK1|STK35L1	serine/threonine kinase 35	protein-coding
143631	chr20	31822321	31823380	+	0	NA	intron (NM_033118, intron 4 of 12)	CpG	3494	NM_033118	85366		NM_033118	ENSG00000101306	MYLK2	KMLC|MLCK|MLCK2|skMLCK	myosin light chain kinase 2	protein-coding
206150	chr7	27866301	27867030	+	0	NA	intron (NM_175061, intron 3 of 4)	intron (NM_175061, intron 3 of 4)	126570	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
183885	chr5	87300871	87301300	+	0	NA	intron (NM_022650, intron 1 of 24)	intron (NM_022650, intron 1 of 24)	22543	NR_130929	644285		NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
106656	chr18	23020771	23021350	+	0	NA	intron (NM_203291, intron 17 of 18)	MIR3|SINE|MIR	87184	NM_203291	5932		NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JAWAD|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding
172891	chr4	3447271	3447430	+	0	NA	intron (NM_001528, intron 10 of 13)	intron (NM_001528, intron 10 of 13)	5382	NM_001297439	3083		NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
3202	chr1	13751421	13752150	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	2370	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
165360	chr3	90174971	90175150	+	0	NA	Intergenic	L1HS|LINE|L1	1067439	NM_005233	2042		NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
40286	chr11	63850551	63850800	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	11565	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
37050	chr11	12215001	12215550	+	0	NA	intron (NR_144415, intron 6 of 26)	intron (NR_144415, intron 6 of 26)	51592	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
132326	chr2	105396721	105396980	+	0	NA	intron (NM_001374399, intron 1 of 6)	intron (NM_001374399, intron 1 of 6)	2201	NM_001318895	2274		NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
160822	chr3	33047751	33049000	+	0	NA	intron (NM_000404, intron 9 of 15)	intron (NM_000404, intron 9 of 15)	48457	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
66112	chr14	60047751	60048250	+	0	NA	intron (NR_075071, intron 29 of 32)	L1PA11|LINE|L1	-43911	NM_022495	64430		NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex 4	protein-coding
11428	chr1	89754021	89755400	+	0	NA	Intergenic	CR1-12_AMi|LINE|CR1	-66322	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
224299	chr9	6450021	6450280	+	0	NA	intron (NR_046386, intron 3 of 16)	L1MC5a|LINE|L1	36951	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
58685	chr12	132547801	132548000	+	0	NA	intron (NM_001382740, intron 4 of 11)	intron (NM_001382740, intron 4 of 11)	-34097	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
145277	chr20	41004671	41004830	+	0	NA	intron (NR_145525, intron 1 of 2)	intron (NR_145525, intron 1 of 2)	24037	NR_145525	100128988		NR_145524		LOC100128988	-	uncharacterized LOC100128988	ncRNA
105055	chr17	82076251	82076680	+	0	NA	Intergenic	L1MEc|LINE|L1	-10661	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
104453	chr17	81099801	81100000	+	0	NA	intron (NM_001385159, intron 1 of 8)	intron (NM_001385159, intron 1 of 8)	2289	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
78174	chr15	90531571	90532150	+	0	NA	intron (NM_001042574, intron 1 of 14)	L3|LINE|CR1	1937	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
151751	chr22	17830971	17831130	+	0	NA	intron (NM_015241, intron 21 of 31)	intron (NM_015241, intron 21 of 31)	53760	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
46902	chr11	134124901	134125500	+	0	NA	intron (NM_032801, intron 1 of 8)	intron (NM_032801, intron 1 of 8)	26163	NR_145790	109623486		NR_145790		SNORD153	-	small nucleolar RNA, C/D box 153	snoRNA
141750	chr2	241897801	241898000	+	0	NA	intron (NM_001382369, intron 1 of 2)	AluJo|SINE|Alu	1240	NM_001382370	285095		NM_001382368	ENSG00000216921	FAM240C	-	family with sequence similarity 240 member C	protein-coding
229006	chr9	113602251	113602650	+	0	NA	Intergenic	MIR3|SINE|MIR	8321	NM_001276262	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
47637	chr12	6230601	6231930	+	0	NA	intron (NM_001769, intron 2 of 7)	MIR|SINE|MIR	30865	NM_001769	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
2450	chr1	9633721	9634530	+	0	NA	Intergenic	AluJb|SINE|Alu	-17606	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
4115	chr1	19317421	19318280	+	0	NA	intron (NR_109848, intron 3 of 9)	intron (NR_109848, intron 3 of 9)	5524	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
174722	chr4	42655271	42656400	+	0	NA	intron (NM_001105529, intron 1 of 35)	intron (NM_001105529, intron 1 of 35)	1270	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
40073	chr11	62763851	62763950	+	0	NA	intron (NM_002696, intron 3 of 7)	AluSx|SINE|Alu	2320	NM_002696	5436		NM_002696	ENSG00000168002	POLR2G	RPB19|RPB7|hRPB19|hsRPB7	RNA polymerase II subunit G	protein-coding
29415	chr10	70197221	70198150	+	0	NA	Intergenic	L1MD2|LINE|L1	-27171	NM_020150	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
134546	chr2	143729551	143729650	+	0	NA	intron (NM_018460, intron 13 of 13)	L2a|LINE|L2	-207467	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
169611	chr3	171253171	171253780	+	0	NA	intron (NM_001161560, intron 2 of 31)	L3|LINE|CR1	-146716	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
46371	chr11	126263251	126263580	+	0	NA	TTS (NM_001330446)	TTS (NM_001330446)	5480	NM_003139	6734		NM_003139	ENSG00000182934	SRPRA	DP|SRPR|Sralpha	SRP receptor subunit alpha	protein-coding
228467	chr9	99851201	99852730	+	0	NA	intron (NM_173200, intron 8 of 8)	L2c|LINE|L2	30080	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
32253	chr10	101890501	101890700	+	0	NA	intron (NM_024541, intron 23 of 25)	L1MD3|LINE|L1	-46680	NM_173197	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
236848	chrX	79269221	79269780	+	0	NA	Intergenic	Intergenic	97834	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
23694	chr1	231550321	231550650	+	0	NA	intron (NR_028393, intron 4 of 15)	intron (NR_028393, intron 4 of 15)	21816	NM_005999	7257		NM_005999	ENSG00000116918	TSNAX	C3PO|TRAX	translin associated factor X	protein-coding
175519	chr4	74364821	74365700	+	0	NA	5' UTR (NM_001432, exon 1 of 5)	5' UTR (NM_001432, exon 1 of 5)	115	NM_001432	2069		NM_001432	ENSG00000124882	EREG	EPR|ER|Ep	epiregulin	protein-coding
192997	chr6	28139971	28140750	+	0	NA	Intergenic	Intergenic	-1523	NM_006298	7745		NM_006298	ENSG00000198315	ZKSCAN8	LD5-1|ZNF192|ZSCAN40	zinc finger with KRAB and SCAN domains 8	protein-coding
111388	chr19	3745471	3745830	+	0	NA	intron (NM_001267560, intron 15 of 20)	MIRc|SINE|MIR	16042	NM_004886	9546		NM_004886	ENSG00000011132	APBA3	MGC:15815|X11L2|mint3	amyloid beta precursor protein binding family A member 3	protein-coding
44062	chr11	95263451	95263750	+	0	NA	Intergenic	Intergenic	-31125	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
216614	chr8	22086701	22087350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2125	NR_148728	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
47720	chr12	6458371	6459800	+	0	NA	intron (NR_147127, intron 6 of 8)	intron (NR_147127, intron 6 of 8)	7043	NR_147127	55080		NM_018009	ENSG00000139192	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein like	protein-coding
154161	chr22	31288101	31288500	+	0	NA	intron (NM_001135911, intron 4 of 4)	AluJb|SINE|Alu	4188	NM_052880	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
219767	chr8	81099371	81099880	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	12443	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
93345	chr17	18218701	18219280	+	0	NA	Intergenic	Intergenic	-6645	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
161824	chr3	45599601	45600030	+	0	NA	intron (NM_014240, intron 1 of 7)	intron (NM_014240, intron 1 of 7)	5064	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
157603	chr22	46015051	46015300	+	0	NA	Intergenic	Intergenic	8559	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
140011	chr2	230984351	230984950	+	0	NA	non-coding (NR_033879, exon 6 of 6)	non-coding (NR_033879, exon 6 of 6)	11382	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
187165	chr5	140568651	140570150	+	0	NA	TTS (NM_080670)	TTS (NM_080670)	-4796	NM_133174	10307		NM_006051	ENSG00000113108	APBB3	FE65L2|SRA	amyloid beta precursor protein binding family B member 3	protein-coding
68190	chr14	76709971	76710580	+	0	NA	Intergenic	Intergenic	-51193	NM_014909	22846		NM_014909	ENSG00000071246	VASH1	KIAA1036|TTCP 1	vasohibin 1	protein-coding
26851	chr10	24874371	24874730	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	78056	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
190641	chr5	181223001	181226430	+	0	NA	non-coding (NR_045218, exon 1 of 7)	non-coding (NR_045218, exon 1 of 7)	1434	NR_045218	90933		NM_033549	ENSG00000146063	TRIM41	RINCK	tripartite motif containing 41	protein-coding
166056	chr3	108823351	108823450	+	0	NA	intron (NM_001317747, intron 1 of 4)	intron (NM_001317747, intron 1 of 4)	614	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
135530	chr2	162298021	162298880	+	0	NA	intron (NM_022168, intron 3 of 15)	intron (NM_022168, intron 3 of 15)	20234	NM_022168	64135		NM_022168	ENSG00000115267	IFIH1	AGS7|Hlcd|IDDM19|IMD95|MDA-5|MDA5|RLR-2|SGMRT1	interferon induced with helicase C domain 1	protein-coding
64634	chr14	31200621	31200880	+	0	NA	intron (NM_015382, intron 2 of 42)	AluSz|SINE|Alu	7043	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
59825	chr13	30420151	30420450	+	0	NA	intron (NR_125771, intron 1 of 1)	intron (NR_125771, intron 1 of 1)	1944	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
167320	chr3	128733771	128734430	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	7917	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
29176	chr10	68903251	68903550	+	0	NA	intron (NM_024045, intron 1 of 14)	AluSx|SINE|Alu	2085	NM_024045	79009		NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
16270	chr1	153995951	153996950	+	0	NA	intron (NM_001159484, intron 35 of 37)	AluSx1|SINE|Alu	5688	NM_001030	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
25087	chr10	3872451	3872550	+	0	NA	Intergenic	Intergenic	38550	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
226911	chr9	79570101	79570700	+	0	NA	Intergenic	Intergenic	-1373	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
200591	chr6	136593801	136594680	+	0	NA	intron (NM_005923, intron 21 of 29)	MER103C|DNA|hAT-Charlie	-34874	NR_125858	101928461		NR_125858	ENSG00000234263	MAP3K5-AS1	-	MAP3K5 antisense RNA 1	ncRNA
118318	chr19	35532871	35533030	+	0	NA	promoter-TSS (NM_014364)	promoter-TSS (NM_014364)	-506	NM_014364	26330		NM_014364	ENSG00000105679	GAPDHS	GAPD2|GAPDH-2|GAPDS|HEL-S-278|HSD-35	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding
84094	chr16	29621621	29621880	+	0	NA	Intergenic	AluSq|SINE|Alu	-8033	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
158398	chr22	50518301	50518900	+	0	NA	intron (NM_014551, intron 7 of 8)	intron (NM_014551, intron 7 of 8)	6998	NM_005138	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
150010	chr21	37079351	37079730	+	0	NA	intron (NM_001353936, intron 1 of 36)	AluSz|SINE|Alu	-3407	NM_003316	7267		NM_003316	ENSG00000182670	TTC3	DCRR1|RNF105|TPRDIII	tetratricopeptide repeat domain 3	protein-coding
110090	chr19	1522801	1523000	+	0	NA	Intergenic	Intergenic	-1177	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
97696	chr17	44316471	44316880	+	0	NA	exon (NM_006695, exon 10 of 11)	exon (NM_006695, exon 10 of 11)	8074	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
157953	chr22	49804871	49805700	+	0	NA	intron (NM_001304808, intron 2 of 12)	intron (NM_001304808, intron 2 of 12)	19046	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
12483	chr1	107941771	107941930	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-22593	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
9470	chr1	50766751	50766850	+	0	NA	intron (NM_007051, intron 4 of 18)	L1PA15|LINE|L1	193467	NM_007051	11124		NM_007051	ENSG00000185104	FAF1	CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1	Fas associated factor 1	protein-coding
144160	chr20	34061821	34062280	+	0	NA	intron (NM_016732, intron 2 of 9)	L2c|LINE|L2	12931	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
124938	chr2	8581221	8581680	+	0	NA	intron (NR_110257, intron 1 of 5)	intron (NR_110257, intron 1 of 5)	2342	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
68165	chr14	75711201	75711430	+	0	NA	intron (NM_015072, intron 9 of 31)	intron (NM_015072, intron 9 of 31)	50069	NM_015072	23093		NM_015072	ENSG00000119685	TTLL5	CORD19|KIAA0998|STAMP	tubulin tyrosine ligase like 5	protein-coding
26158	chr10	14184421	14186650	+	0	NA	intron (NR_134578, intron 2 of 3)	intron (NR_134578, intron 2 of 3)	111251	NR_120638	101928453		NR_120638		LOC101928453	-	uncharacterized LOC101928453	ncRNA
55194	chr12	101414501	101414780	+	0	NA	Intergenic	Intergenic	-6820	NM_001301068	400		NM_001177	ENSG00000120805	ARL1	ARFL1	ADP ribosylation factor like GTPase 1	protein-coding
40962	chr11	65353421	65353680	+	0	NA	3' UTR (NM_006268, exon 11 of 11)	3' UTR (NM_006268, exon 11 of 11)	-1201	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
103721	chr17	78836721	78836980	+	0	NA	intron (NR_169585, intron 2 of 19)	intron (NR_169585, intron 2 of 19)	3964	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
200417	chr6	134873801	134874300	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	76051	NM_170771	64577		NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding
157704	chr22	46375271	46375430	+	0	NA	intron (NM_001378328, intron 24 of 34)	intron (NM_001378328, intron 24 of 34)	39636	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
130419	chr2	85346951	85347700	+	0	NA	intron (NM_017750, intron 5 of 10)	AluSg4|SINE|Alu	7203	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
165905	chr3	106339651	106339750	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	-470299	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
109011	chr18	79712151	79712830	+	0	NA	intron (NM_001318511, intron 6 of 11)	AluJo|SINE|Alu	31060	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
219510	chr8	73977771	73978080	+	0	NA	intron (NM_017866, intron 1 of 2)	intron (NM_017866, intron 1 of 2)	1730	NM_017866	54968		NM_017866	ENSG00000175606	TMEM70	MC5DN2	transmembrane protein 70	protein-coding
216713	chr8	22327301	22327500	+	0	NA	intron (NM_001135721, intron 20 of 22)	AluSp|SINE|Alu	-39878	NM_001351655	23516		NM_015359	ENSG00000104635	SLC39A14	HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
172346	chr4	1711501	1713480	+	0	NA	promoter-TSS (NM_001306074)	promoter-TSS (NM_001306074)	-171	NM_001306074	7884		NM_006527	ENSG00000163950	SLBP	HBP	stem-loop histone mRNA binding protein	protein-coding
63067	chr13	113157701	113157900	+	0	NA	promoter-TSS (NM_003891)	promoter-TSS (NM_003891)	-848	NM_003891	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
50646	chr12	48782601	48783000	+	0	NA	exon (NM_015270, exon 2 of 22)	exon (NM_015270, exon 2 of 22)	6289	NM_015270	112		NM_015270	ENSG00000174233	ADCY6	AC6|LCCS8	adenylate cyclase 6	protein-coding
73263	chr15	41830321	41830580	+	0	NA	intron (NM_005090, intron 1 of 24)	MER52A|LTR|ERV1	2358	NM_001114632	100137047		NM_001114632	ENSG00000243789	JMJD7	-	jumonji domain containing 7	protein-coding
27692	chr10	33134021	33134780	+	0	NA	Intergenic	Intergenic	-17593	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
174526	chr4	40149801	40150350	+	0	NA	intron (NM_001318359, intron 17 of 18)	intron (NM_001318359, intron 17 of 18)	-41005	NM_001278368	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
99172	chr17	49409221	49409480	+	0	NA	exon (NM_002634, exon 4 of 7)	exon (NM_002634, exon 4 of 7)	5508	NM_001281496	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
48245	chr12	8389101	8389300	+	0	NA	intron (NR_024420, intron 1 of 1)	intron (NR_024420, intron 1 of 1)	1552	NR_024420	389634		NM_001012988	ENSG00000226091	LINC00937	-	long intergenic non-protein coding RNA 937	ncRNA
80994	chr16	4053451	4053750	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	62842	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
197942	chr6	89887551	89888080	+	0	NA	Intergenic	CpG	-6654	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
134742	chr2	144619851	144620350	+	0	NA	Intergenic	Intergenic	-47867	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
222240	chr8	133152701	133153500	+	0	NA	Intergenic	Intergenic	-37939	NM_001204869	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
33540	chr10	119283351	119284330	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	76269	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
165655	chr3	101846851	101847200	+	0	NA	intron (NM_001005474, intron 2 of 12)	MLT2B1|LTR|ERVL	-2489	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
4275	chr1	19666751	19666850	+	0	NA	intron (NM_000871, intron 1 of 2)	L2a|LINE|L2	1925	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
184863	chr5	112186471	112186700	+	0	NA	intron (NM_022140, intron 17 of 22)	intron (NM_022140, intron 17 of 22)	25100	NR_002922	654322		NR_002922	ENSG00000238363	SNORA13	ACA13	small nucleolar RNA, H/ACA box 13	snoRNA
56577	chr12	117187321	117187780	+	0	NA	intron (NM_015002, intron 2 of 11)	intron (NM_015002, intron 2 of 11)	2920	NM_015002	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
224277	chr9	6354051	6354450	+	0	NA	Intergenic	Intergenic	25875	NM_001001874	89882		NM_033516	ENSG00000170777	TPD52L3	D55|NYDSP25|TPD55|hD55	TPD52 like 3	protein-coding
132415	chr2	105810001	105810580	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	-41557	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
87215	chr16	69466671	69467230	+	0	NA	TTS (NM_030579)	TTS (NM_030579)	42331	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
194676	chr6	33671571	33672330	+	0	NA	intron (NM_002224, intron 21 of 57)	intron (NM_002224, intron 21 of 57)	-26178	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
67623	chr14	72928221	72928480	+	0	NA	intron (NM_181340, intron 1 of 12)	AluSc8|SINE|Alu	1886	NM_001352449	26094		NM_015604	ENSG00000119599	DCAF4	WDR21|WDR21A	DDB1 and CUL4 associated factor 4	protein-coding
198158	chr6	92723451	92723930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	693470	NM_001376470	2045		NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
119534	chr19	40577951	40578130	+	0	NA	intron (NM_138392, intron 4 of 17)	intron (NM_138392, intron 4 of 17)	1167	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
209300	chr7	75996051	75996500	+	0	NA	TTS (NM_001317786)	TTS (NM_001317786)	-1680	NM_031925	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
150237	chr21	41363551	41363650	+	0	NA	intron (NM_002463, intron 1 of 13)	intron (NM_002463, intron 1 of 13)	1573	NM_002463	4600		NM_002463	ENSG00000183486	MX2	MXB	MX dynamin like GTPase 2	protein-coding
14177	chr1	121447401	121447600	+	0	NA	Intergenic	Intergenic	-49595	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
211218	chr7	102632151	102632650	+	0	NA	Intergenic	Intergenic	10391	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
197024	chr6	53333201	53333600	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	4217	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
180067	chr5	1095501	1095700	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	16463	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
145299	chr20	41046101	41046430	+	0	NA	intron (NM_003286, intron 2 of 20)	MIRc|SINE|MIR	17443	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
187504	chr5	142352801	142353380	+	0	NA	intron (NR_120664, intron 2 of 3)	intron (NR_120664, intron 2 of 3)	27797	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
96392	chr17	40130371	40131180	+	0	NA	TTS (NM_001365921)	TTS (NM_001365921)	8804	NM_001365919	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
132688	chr2	108957951	108958650	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	30920	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
64353	chr14	24090401	24091000	+	0	NA	intron (NM_006177, intron 1 of 3).2	intron (NM_006177, intron 1 of 3).2	-3611	NM_001308054	5106		NM_004563	ENSG00000100889	PCK2	PEPCK|PEPCK-M|PEPCK2|mtPCK2	phosphoenolpyruvate carboxykinase 2, mitochondrial	protein-coding
205815	chr7	24572071	24575030	+	0	NA	promoter-TSS (NM_016447)	promoter-TSS (NM_016447)	98	NM_001303037	51678		NM_016447	ENSG00000105926	PALS2	MPP6|VAM-1|VAM1|p55T	protein associated with LIN7 2, MAGUK p55 family member	protein-coding
36291	chr11	3823321	3823580	+	0	NA	intron (NR_104271, intron 4 of 7)	intron (NR_104271, intron 4 of 7)	14890	NR_104272	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
222573	chr8	140626851	140627500	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	8458	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
70849	chr14	103700771	103701380	+	0	NA	intron (NM_001130107, intron 15 of 15)	intron (NM_001130107, intron 15 of 15)	14376	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
69746	chr14	98960321	98960580	+	0	NA	Intergenic	Intergenic	248837	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
46679	chr11	128733651	128734800	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-38202	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
94783	chr17	30979751	30980050	+	0	NA	intron (NM_197939, intron 1 of 3)	SVA_E|Retroposon|SVA	4565	NR_002221	503645		NR_002221	ENSG00000264743	DPRXP4	-	divergent-paired related homeobox pseudogene 4	pseudo
218288	chr8	42337751	42338930	+	0	NA	promoter-TSS (NM_002690)	promoter-TSS (NM_002690)	-154	NM_002690	5423		NM_002690	ENSG00000070501	POLB	-	DNA polymerase beta	protein-coding
52545	chr12	56134901	56136030	+	0	NA	intron (NM_015292, intron 15 of 30)	AluSp|SINE|Alu	7198	NM_015292	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
95468	chr17	36190001	36190230	+	0	NA	Intergenic	Intergenic	6191	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
1240	chr1	2285601	2285800	+	0	NA	intron (NM_003036, intron 1 of 6)	AluSx1|SINE|Alu	57381	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
95100	chr17	34582351	34582850	+	0	NA	intron (NM_001304438, intron 1 of 8)	intron (NM_001304438, intron 1 of 8)	3018	NM_001304438	124842		NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding
215203	chr7	155804851	155805830	+	0	NA	intron (NM_000193, intron 2 of 2)	CpG	3823	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
235514	chrX	47190351	47191180	+	0	NA	promoter-TSS (NM_153280)	promoter-TSS (NM_153280)	-82	NM_153280	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
31008	chr10	88565151	88565330	+	0	NA	intron (NM_018363, intron 4 of 6)	intron (NM_018363, intron 4 of 6)	18078	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
20617	chr1	198963871	198964100	+	0	NA	Intergenic	L1PB2|LINE|L1	-26556	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
30706	chr10	80596601	80596950	+	0	NA	intron (NM_207372, intron 4 of 6)	intron (NM_207372, intron 4 of 6)	-53022	NR_155749	105378386		NR_155749	ENSG00000231082	LINC02655	-	long intergenic non-protein coding RNA 2655	ncRNA
71133	chr14	104974201	104975200	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	3674	NM_138420	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
193484	chr6	30545771	30546400	+	0	NA	exon (NM_005275, exon 12 of 12)	exon (NM_005275, exon 12 of 12)	-10624	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
142236	chr20	3102051	3103050	+	0	NA	Intergenic	Intergenic	-4361	NR_038395	100134015		NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
13311	chr1	113415221	113415880	+	0	NA	intron (NM_152900, intron 1 of 20)	intron (NM_152900, intron 1 of 20)	25035	NM_152900	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
116630	chr19	18300751	18301250	+	0	NA	Intergenic	Intergenic	18923	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
236361	chrX	70505021	70505280	+	0	NA	3' UTR (NM_020730, exon 14 of 14)	3' UTR (NM_020730, exon 14 of 14)	-49156	NR_109801	100873930		NR_046586	ENSG00000231651	DLG3-AS1	-	DLG3 antisense RNA 1	ncRNA
175471	chr4	73066171	73066330	+	0	NA	intron (NM_001300729, intron 1 of 4)	L2c|LINE|L2	3466	NM_173827	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
94128	chr17	28233171	28233530	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	6787	NR_003064	23615		NM_021093	ENSG00000290671	PYY2	-	peptide YY 2 (pseudogene)	pseudo
72105	chr15	28936651	28937380	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	3011	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
202718	chr6	158855651	158855950	+	0	NA	intron (NR_028496, intron 2 of 2)	AluSx|SINE|Alu	1832	NR_028496	202459		NM_145303	ENSG00000293101	OSTCP1	DC2L|OSTCL	oligosaccharyltransferase complex subunit pseudogene 1	pseudo
216136	chr8	11463521	11463780	+	0	NA	intron (NM_053279, intron 1 of 2)	intron (NM_053279, intron 1 of 2)	3103	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
124074	chr19	55615151	55615730	+	0	NA	exon (NM_001195605, exon 2 of 2)	exon (NM_001195605, exon 2 of 2)	9126	NM_203374	147808		NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
105583	chr18	212551	213000	+	0	NA	3' UTR (NM_001037334, exon 15 of 15)	3' UTR (NM_001037334, exon 15 of 15)	54218	NM_005151	9097		NM_005151	ENSG00000101557	USP14	TGT|Ubp6	ubiquitin specific peptidase 14	protein-coding
196473	chr6	43570221	43570480	+	0	NA	intron (NR_144392, intron 5 of 32)	intron (NR_144392, intron 5 of 32)	5688	NM_020750	57510		NM_020750	ENSG00000124571	XPO5	exp5	exportin 5	protein-coding
158366	chr22	50469221	50471700	+	0	NA	intron (NM_002972, intron 1 of 40)	intron (NM_002972, intron 1 of 40)	4575	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
167577	chr3	129548851	129549150	+	0	NA	intron (NM_001308262, intron 1 of 3)	intron (NM_001308262, intron 1 of 3)	615	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
26396	chr10	17001621	17002510	+	0	NA	intron (NM_001081, intron 28 of 66)	intron (NM_001081, intron 28 of 66)	127746	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
4746	chr1	23459221	23459480	+	0	NA	intron (NM_017707, intron 1 of 24)	MLT1O|LTR|ERVL-MaLR	24829	NM_001143778	55616		NM_017707	ENSG00000088280	ASAP3	ACAP4|CENTB6|DDEFL1|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding
108508	chr18	74172121	74172380	+	0	NA	Intergenic	Intergenic	23727	NM_014177	29090		NM_014177	ENSG00000075336	TIMM21	C18orf55|HSPC154|TIM21	translocase of inner mitochondrial membrane 21	protein-coding
94821	chr17	31321401	31322600	+	0	NA	promoter-TSS (NM_014210)	promoter-TSS (NM_014210)	-378	NM_001003927	2123		NM_014210	ENSG00000126860	EVI2A	EVDA|EVI-2A|EVI2	ecotropic viral integration site 2A	protein-coding
66951	chr14	65833021	65833380	+	0	NA	Intergenic	Intergenic	362098	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
127626	chr2	43106051	43106230	+	0	NA	Intergenic	Intergenic	-3695	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
72498	chr15	33068751	33068850	+	0	NA	promoter-TSS (NM_001103184).4	promoter-TSS (NM_001103184).4	-626	NM_001103184	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
36562	chr11	6645851	6646150	+	0	NA	intron (NM_003737, intron 1 of 20)	intron (NM_003737, intron 1 of 20)	9809	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
227120	chr9	86052721	86053580	+	0	NA	intron (NM_016548, intron 3 of 9)	(CACAC)n|Simple_repeat|Simple_repeat	46408	NM_016548	51280		NM_016548	ENSG00000135052	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
5387	chr1	25456271	25456630	+	0	NA	intron (NM_001282564, intron 4 of 8)	intron (NM_001282564, intron 4 of 8)	25553	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
90956	chr17	2663101	2663600	+	0	NA	intron (NM_000430, intron 2 of 10)	intron (NM_000430, intron 2 of 10)	29569	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
207518	chr7	44805001	44805200	+	0	NA	Intergenic	AluSq2|SINE|Alu	8419	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
106869	chr18	24130951	24131450	+	0	NA	intron (NM_001135993, intron 12 of 13)	AluJb|SINE|Alu	-7756	NM_001308231	26256		NM_012189	ENSG00000154040	CABYR	CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2	calcium binding tyrosine phosphorylation regulated	protein-coding
236867	chrX	80807571	80808800	+	0	NA	intron (NM_153252, intron 4 of 40)	intron (NM_153252, intron 4 of 40)	1692	NM_153252	254065		NM_153252	ENSG00000165288	BRWD3	BRODL|MRX93|XLID93	bromodomain and WD repeat domain containing 3	protein-coding
182953	chr5	71229401	71229600	+	0	NA	intron (NR_033968, intron 1 of 3).5	intron (NR_033968, intron 1 of 3).5	-21369	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
42006	chr11	67401001	67402480	+	0	NA	exon (NM_001008709, exon 1 of 7)	exon (NM_001008709, exon 1 of 7)	118	NM_001008709	5499		NM_002708	ENSG00000172531	PPP1CA	PP-1A|PP1A|PP1alpha|PPP1A	protein phosphatase 1 catalytic subunit alpha	protein-coding
228448	chr9	99836571	99837030	+	0	NA	intron (NM_173200, intron 6 of 8)	L1M2|LINE|L1	14915	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
217971	chr8	38352551	38352850	+	0	NA	intron (NM_017778, intron 1 of 9)	AluJb|SINE|Alu	29571	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
221645	chr8	125932501	125932700	+	0	NA	intron (NR_038447, intron 3 of 3)	L2b|LINE|L2	18597	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
168021	chr3	136884671	136884830	+	0	NA	intron (NM_001291999, intron 1 of 3)	AluSx1|SINE|Alu	22542	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
24052	chr1	235298901	235299450	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-28041	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
115833	chr19	16498601	16499030	+	0	NA	intron (NM_001288834, intron 1 of 7)	AluYk2|SINE|Alu	2421	NM_032207	84167		NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
237923	chrX	132023901	132025200	+	0	NA	intron (NM_001042453, intron 2 of 10)	intron (NM_001042453, intron 2 of 10)	961	NM_001042452	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
139585	chr2	224969121	224970150	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	12792	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
46861	chr11	133932371	133932930	+	0	NA	intron (NM_001277285, intron 7 of 19)	(GACA)n|Simple_repeat|Simple_repeat	24318	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
152165	chr22	20076751	20077050	+	0	NA	Intergenic	MER31A|LTR|ERV1	-3332	NM_001190326	54487		NM_022720	ENSG00000128191	DGCR8	C22orf12|DGCRK6|Gy1|pasha	DGCR8 microprocessor complex subunit	protein-coding
9583	chr1	52031171	52031630	+	0	NA	TTS (NR_046405)	TTS (NR_046405)	2410	NM_138417	112970		NM_138417	ENSG00000198841	KTI12	SBBI81|TOT4	KTI12 chromatin associated homolog	protein-coding
182603	chr5	66142621	66143050	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-1465	NM_001077199	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
24544	chr1	244855201	244856180	+	0	NA	intron (NM_031844, intron 11 of 13)	intron (NM_031844, intron 11 of 13)	-1473	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
172379	chr4	1759671	1760600	+	0	NA	Intergenic	Intergenic	-33158	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
144313	chr20	34869551	34870200	+	0	NA	intron (NM_178026, intron 1 of 14)	L2|LINE|L2	2981	NM_178026	2686		NM_178025	ENSG00000131067	GGT7	D20S101|GGT4|GGTL3|GGTL5	gamma-glutamyltransferase 7	protein-coding
104188	chr17	80441051	80441750	+	0	NA	Intergenic	Intergenic	21982	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
227674	chr9	92988171	92989180	+	0	NA	intron (NM_001369951, intron 3 of 17)	LTR47B3|LTR|ERVL	14206	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
53081	chr12	57734001	57734600	+	0	NA	intron (NM_014770, intron 4 of 17)	intron (NM_014770, intron 4 of 17)	3946	NM_001122772	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
129862	chr2	73044521	73044780	+	0	NA	intron (NM_001371737, intron 2 of 14)	intron (NM_001371737, intron 2 of 14)	14522	NM_001330407	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
46168	chr11	123086321	123086850	+	0	NA	intron (NM_024769, intron 2 of 6)	Charlie4z|DNA|hAT-Charlie	-24449	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
179702	chr4	190122121	190123100	+	0	NA	Intergenic	(AGGGTT)n|Simple_repeat|Simple_repeat	-51164	NM_001293798	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
162777	chr3	49086921	49087380	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluSq|SINE|Alu	6482	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
140884	chr2	237624721	237625280	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-2587	NM_001137550	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
224026	chr9	3398101	3398700	+	0	NA	intron (NM_001282116, intron 1 of 16)	intron (NM_001282116, intron 1 of 16)	91034	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
46400	chr11	126316901	126317100	+	0	NA	intron (NM_014026, intron 2 of 5)	AluY|SINE|Alu	12940	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
147098	chr20	53869671	53870500	+	0	NA	Intergenic	Intergenic	5624	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
87654	chr16	74577921	74578650	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	28829	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
94056	chr17	27356201	27356550	+	0	NA	Intergenic	AluJr|SINE|Alu	-61630	NR_033892	440419		NR_033892	ENSG00000290422	TBC1D3P5	-	TBC1 domain family member 3 pseudogene 5	pseudo
148731	chr21	7130671	7130850	+	0	NA	Intergenic	Intergenic	66334	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
59599	chr13	27623021	27623450	+	0	NA	exon (NM_015972, exon 2 of 2)	exon (NM_015972, exon 2 of 2)	1343	NM_015972	51082		NM_015972	ENSG00000186184	POLR1D	AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2	RNA polymerase I and III subunit D	protein-coding
20952	chr1	202295301	202296230	+	0	NA	intron (NM_021636, intron 6 of 17)	intron (NM_021636, intron 6 of 17)	46171	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
18182	chr1	160826801	160827200	+	0	NA	intron (NM_001261456, intron 9 of 9)	intron (NM_001261456, intron 9 of 9)	30826	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
47131	chr12	725971	726530	+	0	NA	Intergenic	Intergenic	-26329	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
181928	chr5	54883571	54884280	+	0	NA	Intergenic	CpG	101668	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
102394	chr17	75584821	75585200	+	0	NA	Intergenic	Intergenic	-3048	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
17066	chr1	156109371	156110150	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	-4951	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
45745	chr11	119149041	119150500	+	0	NA	intron (NM_001142505, intron 1 of 14)	CpG	181	NM_001142505	64137		NM_022169	ENSG00000172350	ABCG4	WHITE2	ATP binding cassette subfamily G member 4	protein-coding
14379	chr1	144152901	144153330	+	0	NA	Intergenic	TAR1|Satellite|telo	95090	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
84324	chr16	30168801	30169280	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-14370	NM_001193333	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
15346	chr1	149929171	149929330	+	0	NA	exon (NM_181873, exon 16 of 17)	exon (NM_181873, exon 16 of 17)	-1447	NM_005850	10262		NM_005850	ENSG00000143368	SF3B4	AFD1|Hsh49|SAP49|SF3b49	splicing factor 3b subunit 4	protein-coding
120758	chr19	45416601	45416800	+	0	NA	intron (NM_001369409, intron 6 of 8)	MIR3|SINE|MIR	6828	NM_001369416	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
66248	chr14	61352301	61352500	+	0	NA	intron (NM_006255, intron 1 of 13)	AluSz|SINE|Alu	30957	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
5857	chr1	26730871	26731450	+	0	NA	exon (NM_006015, exon 3 of 20)	exon (NM_006015, exon 3 of 20)	35145	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
227773	chr9	93119701	93120900	+	0	NA	Intergenic	Intergenic	13951	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
182704	chr5	68231421	68231880	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	15894	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
158730	chr3	8712451	8712750	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-21202	NM_001234	859		NM_001234	ENSG00000182533	CAV3	LGMD1C|LQT9|MPDT|RMD2|VIP-21|VIP21	caveolin 3	protein-coding
210672	chr7	100541101	100541650	+	0	NA	intron (NM_006076, intron 1 of 11)	intron (NM_006076, intron 1 of 11)	2172	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
47838	chr12	6604201	6604580	+	0	NA	intron (NM_001273, intron 2 of 39)	intron (NM_001273, intron 2 of 39)	2061	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
109884	chr19	1256451	1257130	+	0	NA	intron (NM_177401, intron 7 of 7)	AluJo|SINE|Alu	8237	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
2276	chr1	8939951	8940250	+	0	NA	Intergenic	LTR77|LTR|ERV1	-5768	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
81766	chr16	11501171	11501980	+	0	NA	intron (NM_001370704, intron 9 of 66)	AluJr|SINE|Alu	25672	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
50428	chr12	47414651	47415150	+	0	NA	promoter-TSS (NR_149087)	promoter-TSS (NR_149087)	-108	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
49697	chr12	30851001	30852350	+	0	NA	Intergenic	LTR13_|LTR|ERVK	55994	NR_040245	100287314		NR_040245		LINC00941	lncIAPF|lncRNA-MUF	long intergenic non-protein coding RNA 941	ncRNA
141707	chr2	241842351	241843180	+	0	NA	Intergenic	Intergenic	16129	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
80068	chr16	1982751	1982850	+	0	NA	3' UTR (NM_006453, exon 22 of 22)	3' UTR (NM_006453, exon 22 of 22)	-1331	NM_001267721	124056		NM_144603	ENSG00000196408	NOXO1	P41NOX|P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28	NADPH oxidase organizer 1	protein-coding
188530	chr5	155884021	155884480	+	0	NA	Intergenic	Intergenic	-442914	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
152504	chr22	20937571	20937730	+	0	NA	intron (NR_156180, intron 2 of 3)	intron (NR_156180, intron 2 of 3)	-19442	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
5555	chr1	25892651	25892950	+	0	NA	intron (NM_001145454, intron 4 of 4)	intron (NM_001145454, intron 4 of 4)	13353	NM_203401	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
137322	chr2	196076901	196077300	+	0	NA	Intergenic	Intergenic	-8263	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
178145	chr4	142314001	142314200	+	0	NA	intron (NM_001385334, intron 7 of 24)	intron (NM_001385334, intron 7 of 24)	-8156	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
22420	chr1	220089521	220090680	+	0	NA	promoter-TSS (NM_006085)	promoter-TSS (NM_006085)	-247	NM_001286150	10380		NM_006085	ENSG00000162813	BPNT1	HEL20|HsPIP|PIP	3'(2'), 5'-bisphosphate nucleotidase 1	protein-coding
134411	chr2	142868151	142868650	+	0	NA	Intergenic	LTR27E|LTR|ERV1	-9264	NM_001199241	8942		NM_003937	ENSG00000115919	KYNU	KYNUU|VCRL2	kynureninase	protein-coding
165532	chr3	100634751	100635200	+	0	NA	promoter-TSS (NM_001308362)	promoter-TSS (NM_001308362)	-563	NM_001308362	84873		NM_032787	ENSG00000144820	ADGRG7	GPR128	adhesion G protein-coupled receptor G7	protein-coding
218794	chr8	59017351	59018000	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	101472	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
26026	chr10	12346471	12346830	+	0	NA	Intergenic	AluSx|SINE|Alu	-2897	NM_020397	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
60852	chr13	45507901	45508300	+	0	NA	intron (NM_031431, intron 14 of 22)	intron (NM_031431, intron 14 of 22)	43161	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
160478	chr3	30605551	30605650	+	0	NA	promoter-TSS (NM_001024847)	promoter-TSS (NM_001024847)	-902	NM_001024847	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
4227	chr1	19474851	19474950	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	9395	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
98049	chr17	45440351	45440450	+	0	NA	intron (NM_014798, intron 9 of 11).3	MIRb|SINE|MIR	-7530	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
6429	chr1	28171821	28172130	+	0	NA	intron (NM_001164722, intron 1 of 1)	intron (NM_001164722, intron 1 of 1)	4715	NM_000952	5724		NM_000952	ENSG00000169403	PTAFR	PAFR	platelet activating factor receptor	protein-coding
78921	chr15	101237201	101237400	+	0	NA	intron (NM_014918, intron 1 of 2)	L2a|LINE|L2	14748	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
3005	chr1	12062471	12062630	+	0	NA	promoter-TSS (NM_001243)	promoter-TSS (NM_001243)	-753	NM_001243	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
119086	chr19	39246951	39247280	+	0	NA	non-coding (NR_074079, exon 5 of 5)	non-coding (NR_074079, exon 5 of 5)	1741	NR_074079	101180976		NM_001276254	ENSG00000272395	IFNL4	IFNAN	interferon lambda 4 (gene/pseudogene)	protein-coding
236438	chrX	71533921	71535300	+	0	NA	intron (NM_181673, intron 1 of 21)	intron (NM_181673, intron 1 of 21)	1506	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
31173	chr10	91165671	91166550	+	0	NA	intron (NM_001257101, intron 1 of 9)	MIR3|SINE|MIR	3098	NM_001257101	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
217308	chr8	27393451	27394030	+	0	NA	intron (NM_173174, intron 6 of 35)	L1MC1|LINE|L1	-39630	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
204599	chr7	5305301	5305500	+	0	NA	3' UTR (NM_001300847, exon 11 of 11)	3' UTR (NM_001300847, exon 11 of 11)	22457	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
134597	chr2	144323751	144324170	+	0	NA	intron (NM_001376310, intron 1 of 13)	intron (NM_001376310, intron 1 of 13)	8274	NM_001376318	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
164740	chr3	69025021	69025280	+	0	NA	intron (NM_001363879, intron 15 of 16)	LTR79|LTR|ERVL	-11466	NM_001278689	285203		NM_173654	ENSG00000163378	EOGT	AER61|AOS4|C3orf64|EOGT1	EGF domain specific O-linked N-acetylglucosamine transferase	protein-coding
84968	chr16	31420051	31420700	+	0	NA	intron (NM_001318185, intron 23 of 29)	intron (NM_001318185, intron 23 of 29)	7985	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
212480	chr7	128533071	128533530	+	0	NA	Intergenic	Intergenic	56552	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
125859	chr2	24506971	24507330	+	0	NA	intron (NM_001362954, intron 1 of 23)	intron (NM_001362954, intron 1 of 23)	15273	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
71880	chr15	22466821	22467300	+	0	NA	Intergenic	Intergenic	15314	NR_036470	100132101		NR_036470		HERC2P7	-	HERC2 pseudogene 7	pseudo
148609	chr21	5147701	5147930	+	0	NA	exon (NM_001368238, exon 4 of 21)	exon (NM_001368238, exon 4 of 21)	6843	NR_160695	102724159		NM_001368238	ENSG00000275464	LOC102724159	-	periodic tryptophan protein 2 homolog	protein-coding
206107	chr7	27212071	27212230	+	0	NA	Intergenic	Intergenic	11729	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
136109	chr2	173929401	173929600	+	0	NA	intron (NM_001172712, intron 4 of 6)	MLT1I-int|LTR|ERVL-MaLR	34380	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
153937	chr22	30336571	30337130	+	0	NA	intron (NM_005877, intron 13 of 15)	intron (NM_005877, intron 13 of 15)	-9909	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
2745	chr1	10674501	10674950	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	121921	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
170375	chr3	184687701	184687900	+	0	NA	Intergenic	Intergenic	24264	NM_022149	64110		NM_022149	ENSG00000177383	MAGEF1	MAGE-F1	MAGE family member F1	protein-coding
70413	chr14	102016001	102016750	+	0	NA	exon (NM_001376, exon 37 of 78)	exon (NM_001376, exon 37 of 78)	51802	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
150169	chr21	39183041	39184930	+	0	NA	promoter-TSS (NM_001320795)	promoter-TSS (NM_001320795)	-471	NM_203433	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
132293	chr2	105087271	105087430	+	0	NA	intron (NM_182640, intron 5 of 10)	intron (NM_182640, intron 5 of 10)	15594	NR_110227	101927492		NR_110227	ENSG00000231851	MRPS9-AS1	UTAT33	MRPS9 antisense RNA 1	ncRNA
170840	chr3	190446671	190447030	+	0	NA	intron (NM_207316, intron 2 of 4)	intron (NM_207316, intron 2 of 4)	3026	NM_207316	131920		NM_207316	ENSG00000198398	TMEM207	UNQ846	transmembrane protein 207	protein-coding
106735	chr18	23526921	23527780	+	0	NA	intron (NM_001276342, intron 11 of 17)	AluJb|SINE|Alu	23839	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
96022	chr17	39242971	39243500	+	0	NA	non-coding (NR_164152, exon 5 of 10)	non-coding (NR_164152, exon 5 of 10)	5465	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
3495	chr1	16027821	16028080	+	0	NA	intron (NM_004070, intron 9 of 19)	intron (NM_004070, intron 9 of 19)	5914	NM_001257139	1187		NM_004070	ENSG00000186510	CLCNKA	CLCK1|ClC-K1|hClC-Ka	chloride voltage-gated channel Ka	protein-coding
122457	chr19	49506151	49507080	+	0	NA	Intergenic	MADE1|DNA|TcMar-Mariner	-5747	NR_029703	406942		NR_029703	ENSG00000207782	MIR150	MIRN150|miRNA150|mir-150	microRNA 150	ncRNA
147066	chr20	53729521	53729800	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	121306	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
194649	chr6	33607601	33608200	+	0	NA	Intergenic	Intergenic	-13422	NM_002224	3710		NM_002224	ENSG00000096433	ITPR3	CMT1J|IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding
87333	chr16	70292501	70292700	+	0	NA	intron (NM_001257174, intron 1 of 9)	intron (NM_001257174, intron 1 of 9)	-2177	NM_001363938	11269		NM_007242	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD-box helicase 19B	protein-coding
172073	chr4	1032421	1033430	+	0	NA	Intergenic	Intergenic	20461	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
144019	chr20	33445751	33445850	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2037	NM_003098	6640		NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	syntrophin alpha 1	protein-coding
199981	chr6	127986251	127986800	+	0	NA	intron (NM_001291981, intron 24 of 32).2	intron (NM_001291981, intron 24 of 32).2	-41340	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
148959	chr21	13368001	13368200	+	0	NA	Intergenic	Intergenic	38360	NR_036164	100423018		NR_036164	ENSG00000266211	MIR3156-3	mir-3156-3	microRNA 3156-3	ncRNA
218693	chr8	58556221	58556630	+	0	NA	intron (NM_001007067, intron 1 of 8)	MER1B|DNA|hAT-Charlie	3164	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
38840	chr11	47321871	47322030	+	0	NA	intron (NR_164842, intron 29 of 33)	L2b|LINE|L2	30752	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
30223	chr10	74911251	74911350	+	0	NA	intron (NM_012330, intron 3 of 17).2	AluSx1|SINE|Alu	-1486	NR_134476								
16750	chr1	155308271	155309930	+	0	NA	intron (NM_001378424, intron 1 of 9)	intron (NM_001378424, intron 1 of 9)	234	NM_001378424	2224		NM_002004	ENSG00000160752	FDPS	FPPS|FPS|POROK9	farnesyl diphosphate synthase	protein-coding
51870	chr12	53488451	53488550	+	0	NA	intron (NM_006301, intron 1 of 14)	AluSp|SINE|Alu	10958	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
129966	chr2	73980401	73980600	+	0	NA	intron (NR_104030, intron 1 of 1)	AluSg4|SINE|Alu	939	NR_104030	100874048		NR_104029		DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA
88289	chr16	83995801	83996000	+	0	NA	intron (NM_001329748, intron 8 of 11)	CpG	27252	NM_001329749	54550		NM_019065	ENSG00000103154	NECAB2	EFCBP2|stip-2	N-terminal EF-hand calcium binding protein 2	protein-coding
57311	chr12	121670701	121672200	+	0	NA	intron (NM_001363685, intron 1 of 6)	MER113|DNA|hAT-Charlie	1194	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
142009	chr20	1619801	1620400	+	0	NA	promoter-TSS (NM_001135844)	promoter-TSS (NM_001135844)	-6	NM_001083910	10326		NM_006065	ENSG00000101307	SIRPB1	CD172b|SIRP-BETA-1	signal regulatory protein beta 1	protein-coding
205665	chr7	22924651	22924750	+	0	NA	Intergenic	L1PA4|LINE|L1	68087	NR_003075	692210		NR_003075	ENSG00000221740	SNORD93	HBII-336	small nucleolar RNA, C/D box 93	snoRNA
238797	chrX	154386701	154387900	+	0	NA	Intergenic	Intergenic	8005	NM_000117	2010		NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
82687	chr16	20385901	20386100	+	0	NA	intron (NM_174924, intron 2 of 11)	intron (NM_174924, intron 2 of 11)	18737	NM_174924	204474		NM_174924	ENSG00000169340	PDILT	PDIA7	protein disulfide isomerase like, testis expressed	protein-coding
108799	chr18	78010271	78010500	+	0	NA	Intergenic	(GTG)n|Simple_repeat|Simple_repeat	-16658	NR_104127	101927715		NR_104127	ENSG00000265843	LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
78503	chr15	92929921	92930700	+	0	NA	intron (NM_001042572, intron 5 of 12)	intron (NM_001042572, intron 5 of 12)	25911	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
179445	chr4	184412071	184412230	+	0	NA	intron (NM_002199, intron 5 of 8)	intron (NM_002199, intron 5 of 8)	-29844	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
88938	chr16	87835121	87835680	+	0	NA	promoter-TSS (NR_106833)	promoter-TSS (NR_106833)	-740	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
118975	chr19	38871951	38872250	+	0	NA	intron (NM_001195833, intron 4 of 11)	L2a|LINE|L2	6175	NM_198445	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
15004	chr1	148151101	148153200	+	0	NA	non-coding (NR_046188, exon 1 of 25)	non-coding (NR_046188, exon 1 of 25)	131	NM_001101663	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
75526	chr15	66506771	66506930	+	0	NA	intron (NM_001287823, intron 1 of 17)	intron (NM_001287823, intron 1 of 17)	1524	NM_017975	55055		NM_017975	ENSG00000174442	ZWILCH	KNTC1AP|hZwilch	zwilch kinetochore protein	protein-coding
45827	chr11	119366151	119366250	+	0	NA	intron (NM_001243759, intron 1 of 11)	MIRb|SINE|MIR	-1992	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
210395	chr7	99928921	99929800	+	0	NA	exon (NM_181538, exon 1 of 2)	exon (NM_181538, exon 1 of 2)	260	NM_181538	349149		NM_181538	ENSG00000176402	GJC3	CX29|CX30.2|CX31.3|GJE1	gap junction protein gamma 3	protein-coding
197879	chr6	89144401	89144600	+	0	NA	Intergenic	MIR|SINE|MIR	-1555	NM_001010853	135293		NM_001010853	ENSG00000146281	PM20D2	ACY1L2	peptidase M20 domain containing 2	protein-coding
32326	chr10	102227601	102227880	+	0	NA	exon (NM_152310, exon 2 of 4)	exon (NM_152310, exon 2 of 4)	1441	NM_152310	83401		NM_152310	ENSG00000119915	ELOVL3	CIG-30|CIG30	ELOVL fatty acid elongase 3	protein-coding
212093	chr7	115722221	115722680	+	0	NA	Intergenic	Intergenic	-141009	NR_145801	109623459		NR_145801	ENSG00000202377	SNORA25B	-	small nucleolar RNA, H/ACA box 25B	snoRNA
26218	chr10	14575001	14575930	+	0	NA	intron (NM_001282695, intron 2 of 5)	AluSz|SINE|Alu	-3090	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
178673	chr4	152512251	152512580	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	22618	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
188309	chr5	151195521	151196030	+	0	NA	intron (NM_015621, intron 4 of 8)	(CACCCA)n|Simple_repeat|Simple_repeat	-16359	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
1787	chr1	6101971	6102550	+	0	NA	3' UTR (NM_015557, exon 42 of 42)	3' UTR (NM_015557, exon 42 of 42)	56372	NM_001199863	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
200638	chr6	136924121	136924380	+	0	NA	exon (NM_001008783, exon 2 of 2)	exon (NM_001008783, exon 2 of 2)	1949	NM_001008783	340146		NM_001008783	ENSG00000182747	SLC35D3	FRCL1	solute carrier family 35 member D3	protein-coding
38910	chr11	47419351	47419450	+	0	NA	intron (NM_002804, intron 10 of 11)	intron (NM_002804, intron 10 of 11)	7039	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
124829	chr2	7726771	7727800	+	0	NA	Intergenic	Intergenic	172370	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
101697	chr17	68461451	68462080	+	0	NA	intron (NM_001278433, intron 1 of 10)	intron (NM_001278433, intron 1 of 10)	-4241	NR_135470	55062		NM_017983	ENSG00000070540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
231699	chr9	131719371	131719870	+	0	NA	intron (NM_001377935, intron 1 of 26)	MIR|SINE|MIR	-9778	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
42344	chr11	68507671	68508180	+	0	NA	intron (NR_147971, intron 2 of 24)	FLAM_C|SINE|Alu	47173	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
176032	chr4	82363721	82364550	+	0	NA	intron (NM_001003810, intron 1 of 6)	AluJb|SINE|Alu	9856	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
58143	chr12	124909811	124914300	+	0	NA	exon (NM_021009, exon 2 of 2)	exon (NM_021009, exon 2 of 2)	2595	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
132401	chr2	105792721	105792980	+	0	NA	intron (NM_001004722, intron 1 of 3)	L1MC5|LINE|L1	47787	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
21954	chr1	207997801	207998150	+	0	NA	Intergenic	Intergenic	38984	NR_167983	105372883		NR_167982		LINC02767	-	long intergenic non-protein coding RNA 2767	ncRNA
147107	chr20	53894601	53895130	+	0	NA	Intergenic	AluJr|SINE|Alu	-19156	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
31713	chr10	97673951	97674450	+	0	NA	3' UTR (NM_018425, exon 9 of 9)	3' UTR (NM_018425, exon 9 of 9)	13041	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
178774	chr4	153434301	153434880	+	0	NA	Intergenic	L1MB3|LINE|L1	-31756	NM_015196	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
239286	chrY	14249201	14249400	+	0	NA	Intergenic	Intergenic	193073	NM_181880	353513		NM_181880	ENSG00000129862	VCY1B	BPY1B	variable charge Y-linked 1B	protein-coding
169348	chr3	160369721	160370350	+	0	NA	intron (NR_148401, intron 3 of 18)	intron (NR_148401, intron 3 of 18)	13731	NM_001190242	57560		NM_020800	ENSG00000068885	IFT80	ATD2|CFAP167|FAP167|SRTD2|WDR56	intraflagellar transport 80	protein-coding
205801	chr7	24255071	24255730	+	0	NA	Intergenic	Intergenic	-28790	NM_000905	4852		NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding
120243	chr19	42398471	42398630	+	0	NA	intron (NR_073180, intron 1 of 2)	AluSg7|SINE|Alu	1402	NR_073180	100996307		NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
206066	chr7	27165101	27165680	+	0	NA	exon (NM_152739, exon 1 of 2)	exon (NM_152739, exon 1 of 2)	147	NM_152739	3205		NM_002142	ENSG00000078399	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding
22221	chr1	212558251	212559450	+	0	NA	Intergenic	CpG	-6484	NM_001030287	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
90571	chr17	1521951	1522050	+	0	NA	intron (NM_006224, intron 10 of 11)	FLAM_C|SINE|Alu	5081	NR_028514	100306951		NR_028514	ENSG00000236618	PITPNA-AS1	-	PITPNA antisense RNA 1	ncRNA
83648	chr16	28308471	28308630	+	0	NA	intron (NM_001024401, intron 1 of 3)	AluJo|SINE|Alu	16025	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
152289	chr22	20314071	20314430	+	0	NA	TTS (NM_033257)	TTS (NM_033257)	5810	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
120327	chr19	43530601	43530800	+	0	NA	Intergenic	MIR|SINE|MIR	-2488	NM_174945	284346		NM_174945	ENSG00000176472	ZNF575	-	zinc finger protein 575	protein-coding
114594	chr19	12944851	12947130	+	0	NA	exon (NM_001270362, exon 1 of 9)	exon (NM_001270362, exon 1 of 9)	128	NM_005053	5886		NM_005053	ENSG00000179262	RAD23A	HHR23A|HR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding
154514	chr22	35915651	35915750	+	0	NA	intron (NM_001349999, intron 2 of 13)	intron (NM_001349999, intron 2 of 13)	45930	NM_001349996	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
64514	chr14	24395571	24395800	+	0	NA	Intergenic	LTR33|LTR|ERVL	-3318	NM_025081	57523		NM_025081	ENSG00000205978	NYNRIN	CGIN1|KIAA1305	NYN domain and retroviral integrase containing	protein-coding
369	chr1	1029601	1029800	+	0	NA	intron (NM_198576, intron 2 of 35)	intron (NM_198576, intron 2 of 35)	-4293	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
161373	chr3	40623601	40623880	+	0	NA	Intergenic	Intergenic	98780	NM_001098414	285268		NM_198484	ENSG00000172888	ZNF621	-	zinc finger protein 621	protein-coding
10395	chr1	65062901	65063850	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	4371	NM_001321853	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
87155	chr16	69314451	69314950	+	0	NA	intron (NM_013245, intron 1 of 10)	intron (NM_013245, intron 1 of 10)	3350	NM_013245	27183		NM_013245	ENSG00000132612	VPS4A	CIMDAG|SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
3154	chr1	12596921	12597180	+	0	NA	promoter-TSS (NM_001324370)	promoter-TSS (NM_001324370)	-437	NM_001324370	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
146518	chr20	49917721	49918150	+	0	NA	intron (NR_134564, intron 1 of 2)	AluY|SINE|Alu	2113	NR_134564	105372653		NR_134564		LOC105372653	-	uncharacterized LOC105372653	ncRNA
103858	chr17	79734551	79734650	+	0	NA	intron (NM_178543, intron 2 of 5)	AluY|SINE|Alu	3657	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
143762	chr20	32387071	32387930	+	0	NA	intron (NM_015338, intron 3 of 11)	intron (NM_015338, intron 3 of 11)	28435	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
153492	chr22	26474951	26475450	+	0	NA	intron (NR_146311, intron 4 of 13)	L1ME2z|LINE|L1	4288	NR_073136	89781		NM_022081	ENSG00000100099	HPS4	BLOC3S2|LE	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding
113412	chr19	9586621	9587200	+	0	NA	Intergenic	LTR55|LTR|ERVL?	-2406	NM_001308269	7675		NM_001008727	ENSG00000197961	ZNF121	D19S204|ZHC32|ZNF20	zinc finger protein 121	protein-coding
165911	chr3	106826971	106827230	+	0	NA	Intergenic	Intergenic	413538	NR_028303	100302640		NR_028303		LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
109005	chr18	79705101	79705780	+	0	NA	intron (NM_001318511, intron 5 of 11)	CpG	24010	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
184714	chr5	109402621	109402880	+	0	NA	intron (NM_014819, intron 1 of 9)	L1ME1|LINE|L1	7224	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
90620	chr17	1642601	1644700	+	0	NA	exon (NM_003693, exon 4 of 11).2	exon (NM_003693, exon 4 of 11).2	2082	NM_145350	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
20537	chr1	198695701	198696100	+	0	NA	TTS (NM_001267798)	TTS (NM_001267798)	56860	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
10360	chr1	64943771	64944350	+	0	NA	intron (NM_001321852, intron 1 of 24)	AluY|SINE|Alu	22489	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
173218	chr4	6900801	6901650	+	0	NA	Intergenic	Intergenic	-8219	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
221173	chr8	120124901	120125130	+	0	NA	promoter-TSS (NM_021110)	promoter-TSS (NM_021110)	-87	NM_001384947	7373		NM_021110	ENSG00000187955	COL14A1	UND	collagen type XIV alpha 1 chain	protein-coding
7858	chr1	36375571	36375730	+	0	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	10274	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
186416	chr5	135551651	135552050	+	0	NA	Intergenic	Intergenic	-15886	NM_006161	4762		NM_006161	ENSG00000181965	NEUROG1	AKA|CCDDRD|Math4C|NEUROD3|bHLHa6|ngn1	neurogenin 1	protein-coding
225056	chr9	33220821	33221400	+	0	NA	Intergenic	Intergenic	-19057	NM_014471	27290		NM_014471	ENSG00000122711	SPINK4	HEL136|PEC-60|PEC60	serine peptidase inhibitor Kazal type 4	protein-coding
161079	chr3	38117871	38118830	+	0	NA	intron (NM_001321153, intron 33 of 36)	intron (NM_001321153, intron 33 of 36)	18777	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
86504	chr16	67054851	67055350	+	0	NA	intron (NM_001368708, intron 3 of 4)	intron (NM_001368708, intron 3 of 4)	25951	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
61854	chr13	76990701	76993180	+	0	NA	promoter-TSS (NM_001366624)	promoter-TSS (NM_001366624)	-141	NM_001366624	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
170692	chr3	187802571	187803550	+	0	NA	Intergenic	Intergenic	-57592	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
235161	chrX	41122101	41122630	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	36920	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
150285	chr21	41901001	41901200	+	0	NA	intron (NM_015500, intron 12 of 13)	intron (NM_015500, intron 12 of 13)	-21756	NM_001282934	63977		NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
120570	chr19	44993371	44993530	+	0	NA	TTS (NM_001294)	TTS (NM_001294)	-8014	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
229148	chr9	114488901	114489380	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	14075	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
215336	chr7	157364801	157365050	+	0	NA	intron (NM_001363676, intron 3 of 6)	intron (NM_001363676, intron 3 of 6)	27921	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
233990	chrX	2829301	2829500	+	0	NA	intron (NM_001079855, intron 1 of 10)	CpG	470	NM_001079855	8908		NM_003918	ENSG00000056998	GYG2	GN-2|GN2	glycogenin 2	protein-coding
216864	chr8	22621171	22621950	+	0	NA	TTS (NR_033902)	TTS (NR_033902)	16518	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
41098	chr11	65534421	65534680	+	0	NA	intron (NM_020680, intron 9 of 17)	L2a|LINE|L2	9467	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
206098	chr7	27202171	27202980	+	0	NA	non-coding (NR_037843, exon 2 of 3)	non-coding (NR_037843, exon 2 of 3)	2154	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
40796	chr11	64897571	64898900	+	0	NA	TTS (NR_106808)	TTS (NR_106808)	202	NR_106808	102466192		NR_106808	ENSG00000274986	MIR6750	hsa-mir-6750	microRNA 6750	ncRNA
129998	chr2	74061271	74061430	+	0	NA	intron (NM_001366022, intron 3 of 10)	SVA_D|Retroposon|SVA	58658	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
219889	chr8	85656021	85656430	+	0	NA	promoter-TSS (NR_003594)	promoter-TSS (NR_003594)	-549	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
162621	chr3	48713471	48713950	+	0	NA	intron (NM_016291, intron 1 of 5)	AluSx|SINE|Alu	3511	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
405	chr1	1063851	1065200	+	0	NA	intron (NR_148960, intron 3 of 3)	CpG	4791	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
177991	chr4	139238051	139238150	+	0	NA	Intergenic	AluSx3|SINE|Alu	42125	NM_032623	84709		NM_032623	ENSG00000137463	MGARP	C4orf49|CESP-1|HUMMR|OSAP	mitochondria localized glutamic acid rich protein	protein-coding
233646	chrX	850601	850800	+	0	NA	Intergenic	Intergenic	226356	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
12989	chr1	110915271	110915430	+	0	NA	Intergenic	AluYm1|SINE|Alu	42202	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
142303	chr20	3330001	3330480	+	0	NA	intron (NM_001009984, intron 12 of 36)	intron (NM_001009984, intron 12 of 36)	77422	NM_001009984	25943		NM_001009984	ENSG00000088854	DNAAF9	C20orf194	dynein axonemal assembly factor 9	protein-coding
184613	chr5	105166551	105166650	+	0	NA	Intergenic	AluY|SINE|Alu	67126	NR_000039	9366		NM_004250	ENSG00000232159	RAB9BP1	RAB9P1	RAB9B, member RAS oncogene family pseudogene 1	pseudo
62563	chr13	99958771	99959130	+	0	NA	Intergenic	Intergenic	-1785	NR_120421	101927437		NR_120421		CLYBL-AS3	-	CLYBL antisense RNA 3	ncRNA
133140	chr2	112670771	112671230	+	0	NA	Intergenic	Intergenic	25061	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
226655	chr9	74931071	74931230	+	0	NA	Intergenic	AluSx|SINE|Alu	21762	NM_017998	55071		NM_017998	ENSG00000135045	C9orf40	-	chromosome 9 open reading frame 40	protein-coding
46201	chr11	123480271	123480600	+	0	NA	intron (NM_001367421, intron 2 of 20)	intron (NM_001367421, intron 2 of 20)	-29481	NM_001330396	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
140005	chr2	230973721	230974980	+	0	NA	Intergenic	Intergenic	21682	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
198523	chr6	106528951	106529280	+	0	NA	intron (NM_001371242, intron 7 of 21)	AluSx|SINE|Alu	17260	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
185088	chr5	119066021	119066280	+	0	NA	intron (NR_134250, intron 1 of 2)	AluY|SINE|Alu	4740	NR_134250	105379143		NR_134249		DMXL1-DT	-	DMXL1 divergent transcript	ncRNA
37247	chr11	14626051	14626350	+	0	NA	intron (NM_148976, intron 1 of 10)	intron (NM_148976, intron 1 of 10)	17434	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
212399	chr7	128110701	128111550	+	0	NA	Intergenic	Intergenic	29264	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
188003	chr5	149540151	149540450	+	0	NA	intron (NM_001892, intron 2 of 9)	intron (NM_001892, intron 2 of 9)	10065	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
226905	chr9	79472351	79472450	+	0	NA	Intergenic	Intergenic	-99373	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
224844	chr9	27572351	27574580	+	0	NA	promoter-TSS (NM_018325)	promoter-TSS (NM_018325)	16	NM_018325	203228		NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1	C9orf72-SMCR8 complex subunit	protein-coding
12238	chr1	100424971	100425830	+	0	NA	intron (NM_001319210, intron 5 of 16)	L2b|LINE|L2	72894	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
139316	chr2	219540351	219540450	+	0	NA	exon (NM_024536, exon 4 of 4)	exon (NM_024536, exon 4 of 4)	2697	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
151	chr1	530071	530530	+	0	NA	Intergenic	Intergenic	-34855	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
73071	chr15	40918971	40919450	+	0	NA	Intergenic	Intergenic	-10130	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
70919	chr14	104137301	104137880	+	0	NA	non-coding (NR_158217, exon 1 of 3)	non-coding (NR_158217, exon 1 of 3)	1039	NR_158217	105370708		NR_158217		KIF26A-DT	-	KIF26A divergent transcript	ncRNA
226532	chr9	72024951	72025400	+	0	NA	Intergenic	Intergenic	35438	NM_001128618	138240		NM_001128618	ENSG00000204669	C9orf57	-	chromosome 9 open reading frame 57	protein-coding
215491	chr7	158395021	158395600	+	0	NA	intron (NM_130842, intron 1 of 21)	(GAGGGGC)n|Simple_repeat|Simple_repeat	137503	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
72604	chr15	36590971	36591230	+	0	NA	intron (NM_001321758, intron 1 of 8)	intron (NM_001321758, intron 1 of 8)	-3777	NM_032499	84529		NM_032499	ENSG00000186073	CDIN1	C15orf41|HH114	CDAN1 interacting nuclease 1	protein-coding
215760	chr8	2023871	2024230	+	0	NA	Intergenic	CpG	-20996	NM_003970	9172		NM_003970	ENSG00000036448	MYOM2	TTNAP	myomesin 2	protein-coding
123943	chr19	55381701	55382100	+	0	NA	intron (NM_001190764, intron 1 of 1)	intron (NM_001190764, intron 1 of 1)	2392	NM_001190764	388564		NM_001190764	ENSG00000233493	TMEM238	-	transmembrane protein 238	protein-coding
181839	chr5	52948251	52948850	+	0	NA	intron (NM_181501, intron 28 of 28)	intron (NM_181501, intron 28 of 28)	-40802	NR_073107	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
221720	chr8	127311901	127312100	+	0	NA	intron (NR_117100, intron 5 of 5)	L1HS|LINE|L1	67363	NR_117099	103021164		NR_117099		CASC21	CARLO2|CARLo-2|LINC01244	cancer susceptibility 21	ncRNA
52442	chr12	55924851	55925150	+	0	NA	intron (NM_032345, intron 1 of 2)	intron (NM_032345, intron 1 of 2)	2125	NM_001143853	84305		NM_032345	ENSG00000170473	PYM1	PYM|WIBG	PYM homolog 1, exon junction complex associated factor	protein-coding
7388	chr1	32900921	32902200	+	0	NA	promoter-TSS (NM_001329725)	promoter-TSS (NM_001329725)	-171	NM_001329723	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
151565	chr21	46562171	46562530	+	0	NA	intron (NM_001353942, intron 34 of 37)	intron (NM_001353942, intron 34 of 37)	42732	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
139537	chr2	224603801	224604000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18503	NM_001257197	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
209539	chr7	77196501	77196700	+	0	NA	exon (NM_006682, exon 2 of 2)	exon (NM_006682, exon 2 of 2)	3219	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
199458	chr6	117655251	117655550	+	0	NA	Intergenic	Intergenic	19884	NR_110854	101927919		NR_110854		LOC101927919	-	uncharacterized LOC101927919	ncRNA
180106	chr5	1227871	1228030	+	0	NA	intron (NM_182632, intron 1 of 11)	intron (NM_182632, intron 1 of 11)	2569	NM_182632	348932		NM_182632	ENSG00000164363	SLC6A18	Xtrp2	solute carrier family 6 member 18	protein-coding
204708	chr7	5532801	5534350	+	0	NA	Intergenic	AluJb|SINE|Alu	-2974	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
99224	chr17	49580051	49580350	+	0	NA	3' UTR (NM_007225, exon 2 of 2)	3' UTR (NM_007225, exon 2 of 2)	4329	NM_007225	11248		NM_007225	ENSG00000182575	NXPH3	NPH3	neurexophilin 3	protein-coding
81781	chr16	11524521	11524780	+	0	NA	intron (NM_001370704, intron 1 of 66)	intron (NM_001370704, intron 1 of 66)	2597	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
85789	chr16	56948201	56948400	+	0	NA	Intergenic	AluSz|SINE|Alu	-13650	NM_001286085	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
14717	chr1	145959321	145959580	+	0	NA	TTS (NM_001039888)	TTS (NM_001039888)	-1433	NM_153713	128077		NM_153713	ENSG00000271601	LIX1L	-	limb and CNS expressed 1 like	protein-coding
187289	chr5	141573451	141574250	+	0	NA	exon (NM_001079812, exon 15 of 27)	exon (NM_001079812, exon 15 of 27)	15539	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
36490	chr11	6363021	6363400	+	0	NA	Intergenic	Intergenic	-27264	NM_001365135	6609		NM_000543	ENSG00000166311	SMPD1	ASM|ASMASE|NPD	sphingomyelin phosphodiesterase 1	protein-coding
131018	chr2	88013551	88013730	+	0	NA	Intergenic	Intergenic	-27850	NM_001024457	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
197846	chr6	88870721	88871200	+	0	NA	intron (NM_001286428, intron 7 of 13)	intron (NM_001286428, intron 7 of 13)	92658	NM_003800	8732		NM_003800	ENSG00000111880	RNGTT	CAP1A|HCE|HCE1|hCAP	RNA guanylyltransferase and 5'-phosphatase	protein-coding
71406	chr14	105533651	105534150	+	0	NA	non-coding (NR_135205, exon 2 of 2)	non-coding (NR_135205, exon 2 of 2)	2045	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
231970	chr9	133162871	133163030	+	0	NA	intron (NM_021996, intron 1 of 6)	intron (NM_021996, intron 1 of 6)	964	NM_001288572	26301		NM_021996	ENSG00000148288	GBGT1	A3GALNT|FS|UNQ2513	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)	protein-coding
163099	chr3	50109151	50109330	+	0	NA	intron (NR_036627, intron 13 of 23)	AluYm1|SINE|Alu	-8252	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
192432	chr6	24887871	24888500	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-10820	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
59747	chr13	29958201	29959080	+	0	NA	Intergenic	Intergenic	22109	NR_033889	440131		NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
223193	chr8	143571371	143572330	+	0	NA	intron (NM_001100878, intron 2 of 13).2	intron (NM_001100878, intron 2 of 13).2	922	NM_001100878	642475		NM_001100878	ENSG00000204839	MROH6	C8orf73	maestro heat like repeat family member 6	protein-coding
74019	chr15	52175901	52176300	+	0	NA	intron (NM_016194, intron 3 of 12)	intron (NM_016194, intron 3 of 12)	3591	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
41964	chr11	67350771	67351730	+	0	NA	non-coding (NR_046413, exon 4 of 4)	non-coding (NR_046413, exon 4 of 4)	2296	NM_021173	57804		NM_021173	ENSG00000175482	POLD4	POLDS|p12	DNA polymerase delta 4, accessory subunit	protein-coding
113741	chr19	10490101	10490500	+	0	NA	intron (NM_012289, intron 3 of 5)	AluJo|SINE|Alu	12471	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
135003	chr2	153235321	153235900	+	0	NA	Intergenic	LTR43B|LTR|ERV1	243152	NM_019845	56475		NM_019845	ENSG00000177519	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator homolog	protein-coding
36465	chr11	6023021	6023280	+	0	NA	Intergenic	Intergenic	4591	NM_001001917	120796		NM_001001917	ENSG00000180934	OR56A1	OR11-75	olfactory receptor family 56 subfamily A member 1	protein-coding
134405	chr2	138697151	138697250	+	0	NA	intron (NM_007226, intron 1 of 1)	L1ME2|LINE|L1	83190	NM_007226	11249		NM_007226	ENSG00000144227	NXPH2	NPH2	neurexophilin 2	protein-coding
138088	chr2	202232071	202232630	+	0	NA	intron (NR_163943, intron 1 of 5)	intron (NR_163943, intron 1 of 5)	6247	NM_003352	7341		NM_003352	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin like modifier 1	protein-coding
81992	chr16	11900801	11901700	+	0	NA	intron (NM_001130007, intron 1 of 14)	intron (NM_001130007, intron 1 of 14)	14706	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
163142	chr3	50142121	50142380	+	0	NA	intron (NR_135301, intron 1 of 3)	AluSx|SINE|Alu	-12808	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
151472	chr21	46231721	46232200	+	0	NA	intron (NR_110565, intron 2 of 3)	intron (NR_110565, intron 2 of 3)	2729	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
32096	chr10	101143901	101144100	+	0	NA	Intergenic	Intergenic	-2734	NR_130724	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
215517	chr7	158710521	158711450	+	0	NA	Intergenic	L1MB7|LINE|L1	-6181	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
81823	chr16	11566171	11566500	+	0	NA	intron (NR_024320, intron 1 of 3)	MER81|DNA|hAT-Blackjack	20038	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
33031	chr10	110802401	110803180	+	0	NA	intron (NM_001134363, intron 7 of 13)	intron (NM_001134363, intron 7 of 13)	68114	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
55695	chr12	107695871	107696050	+	0	NA	intron (NM_007062, intron 5 of 14)	intron (NM_007062, intron 5 of 14)	9918	NM_001317962	11137		NM_007062	ENSG00000136045	PWP1	IEF-SSP-9502|NCLB	PWP1 homolog, endonuclein	protein-coding
66576	chr14	63471021	63471850	+	0	NA	intron (NM_006246, intron 2 of 13)	intron (NM_006246, intron 2 of 13)	36803	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
14925	chr1	147542611	147543350	+	0	NA	intron (NM_004326, intron 1 of 9)	intron (NM_004326, intron 1 of 9)	1479	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
7596	chr1	35195301	35195750	+	0	NA	Intergenic	AluSx|SINE|Alu	-2380	NM_005066	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
163393	chr3	50505151	50505500	+	0	NA	Intergenic	Intergenic	-1081	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
151104	chr21	44861621	44862080	+	0	NA	intron (NM_004339, intron 2 of 5)	L2a|LINE|L2	11840	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
60647	chr13	42466121	42466530	+	0	NA	intron (NR_135319, intron 3 of 3)	intron (NR_135319, intron 3 of 3)	41433	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
69558	chr14	96741221	96742000	+	0	NA	intron (NR_146552, intron 1 of 3)	CpG	419	NR_146552	105370646		NR_146552	ENSG00000258979	LINC02299	-	long intergenic non-protein coding RNA 2299	ncRNA
53066	chr12	57720101	57720300	+	0	NA	exon (NM_001017958, exon 13 of 15)	exon (NM_001017958, exon 13 of 15)	-6040	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
83426	chr16	27246051	27246750	+	0	NA	intron (NM_145080, intron 2 of 7)	intron (NM_145080, intron 2 of 7)	-21805	NR_037184	400512		NR_037184	ENSG00000245888	NSMCE1-DT	-	NSMCE1 divergent transcript	ncRNA
129612	chr2	70107271	70107430	+	0	NA	Intergenic	L2|LINE|L2	17966	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
120821	chr19	45488151	45488900	+	0	NA	intron (NM_005619, intron 8 of 10)	intron (NM_005619, intron 8 of 10)	4728	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
55660	chr12	107335821	107336080	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	15362	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
73803	chr15	48794721	48795030	+	0	NA	intron (NM_001194998, intron 6 of 26)	intron (NM_001194998, intron 6 of 26)	16194	NM_001194998	22995		NM_014985	ENSG00000103995	CEP152	MCPH4|MCPH9|SCKL5	centrosomal protein 152	protein-coding
76587	chr15	75351271	75351700	+	0	NA	intron (NM_001352519, intron 3 of 5)	AluJb|SINE|Alu	2200	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
223342	chr8	143838371	143838530	+	0	NA	promoter-TSS (NR_106904)	promoter-TSS (NR_106904)	-634	NR_106904	102466748		NR_106904	ENSG00000284142	MIR6845	hsa-mir-6845	microRNA 6845	ncRNA
238542	chrX	153763751	153764580	+	0	NA	promoter-TSS (NM_005393)	promoter-TSS (NM_005393)	-31	NM_001163257	5365		NM_005393	ENSG00000198753	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
46886	chr11	134035751	134035850	+	0	NA	intron (NR_027276, intron 1 of 2)	intron (NR_027276, intron 1 of 2)	3528	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
106619	chr18	22348071	22348700	+	0	NA	Intergenic	Intergenic	69530	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
71355	chr14	105472151	105473050	+	0	NA	promoter-TSS (NM_001270837)	promoter-TSS (NM_001270837)	-345	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
236617	chrX	74449671	74449830	+	0	NA	intron (NM_006517, intron 1 of 5)	intron (NM_006517, intron 1 of 5)	28257	NM_006517	6567		NM_006517	ENSG00000147100	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16 member 2	protein-coding
99712	chr17	50869901	50870100	+	0	NA	Intergenic	Intergenic	-2022	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
103677	chr17	78794971	78795780	+	0	NA	TTS (NM_001321291)	TTS (NM_001321291)	-13033	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
205307	chr7	12131121	12131400	+	0	NA	Intergenic	Intergenic	-80034	NM_018374	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
135309	chr2	160322401	160322700	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	-50655	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
233679	chrX	1167321	1167780	+	0	NA	Intergenic	MER4E1|LTR|ERV1	45099	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
181765	chr5	50729771	50729930	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	62436	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
92417	chr17	8385901	8386300	+	0	NA	Intergenic	AluSz|SINE|Alu	-2907	NM_000987	6154		NM_000987	ENSG00000161970	RPL26	DBA11|L26|uL24	ribosomal protein L26	protein-coding
105231	chr17	82374401	82374600	+	0	NA	exon (NM_001381897, exon 2 of 2)	exon (NM_001381897, exon 2 of 2)	2735	NM_001381897	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
236789	chrX	79138701	79139350	+	0	NA	Intergenic	MIR3|SINE|MIR	-5663	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
16471	chr1	154621901	154622330	+	0	NA	intron (NM_001365046, intron 1 of 15)	intron (NM_001365046, intron 1 of 15)	5856	NM_001025107	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
9299	chr1	46476621	46476880	+	0	NA	Intergenic	Intergenic	-13086	NM_172225	127343		NM_147192	ENSG00000197587	DMBX1	Atx|MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
106787	chr18	23865771	23866280	+	0	NA	intron (NM_198129, intron 36 of 74)	AluSz|SINE|Alu	-6995	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
10025	chr1	55641171	55641330	+	0	NA	Intergenic	Intergenic	303713	NR_147162	105378739		NR_147162	ENSG00000230250	LINC01753	-	long intergenic non-protein coding RNA 1753	ncRNA
110483	chr19	2031301	2031530	+	0	NA	Intergenic	AluSx|SINE|Alu	-15701	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
107463	chr18	46915971	46916130	+	0	NA	intron (NR_148703, intron 1 of 16)	intron (NR_148703, intron 1 of 16)	1457	NM_001354034	9063		NM_004671	ENSG00000078043	PIAS2	ARIP3|DIP|MIZ1|PIASX|SIZ2|ZMIZ4	protein inhibitor of activated STAT 2	protein-coding
183447	chr5	79025021	79025350	+	0	NA	intron (NR_104003, intron 8 of 9)	intron (NR_104003, intron 8 of 9)	-39227	NM_198709	411		NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
64135	chr14	22869551	22869880	+	0	NA	Intergenic	AluSq|SINE|Alu	-2025	NM_014045	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
161046	chr3	38010451	38010750	+	0	NA	intron (NM_006225, intron 5 of 14)	intron (NM_006225, intron 5 of 14)	13920	NM_001130964	5333		NM_006225	ENSG00000187091	PLCD1	NDNC3|PLC-III	phospholipase C delta 1	protein-coding
48032	chr12	6953301	6954430	+	0	NA	intron (NM_002831, intron 3 of 15)	intron (NM_002831, intron 3 of 15)	2509	NM_002831	5777		NM_002831	ENSG00000111679	PTPN6	HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1	protein tyrosine phosphatase non-receptor type 6	protein-coding
164625	chr3	66393421	66394600	+	0	NA	intron (NM_001377344, intron 11 of 17)	intron (NM_001377344, intron 11 of 17)	11757	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
17081	chr1	156126901	156128250	+	0	NA	intron (NM_001282624, intron 2 of 10)	AluSx3|SINE|Alu	1405	NM_001257374	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
170918	chr3	194140601	194142400	+	0	NA	Intergenic	CpG	5352	NM_005524	3280		NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
68664	chr14	90263551	90264280	+	0	NA	intron (NM_002802, intron 5 of 10)	intron (NM_002802, intron 5 of 10)	5976	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
29716	chr10	72076401	72076900	+	0	NA	intron (NM_014767, intron 2 of 11)	AluJo|SINE|Alu	11901	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
39607	chr11	61360371	61360530	+	0	NA	intron (NM_153611, intron 1 of 6)	MER58B|DNA|hAT-Charlie	1432	NM_001300763	220002		NM_153611	ENSG00000162144	CYB561A3	CYBASC3|LCYTB	cytochrome b561 family member A3	protein-coding
175556	chr4	75555701	75556100	+	0	NA	promoter-TSS (NM_001206981)	promoter-TSS (NM_001206981)	-148	NM_001257072	152816		NM_178497	ENSG00000174792	ODAPH	AI2A4|C4orf26	odontogenesis associated phosphoprotein	protein-coding
230290	chr9	127942371	127943170	+	0	NA	3' UTR (NM_001035254, exon 11 of 11)	3' UTR (NM_001035254, exon 11 of 11)	-4916	NM_001378436	8818		NM_003863	ENSG00000136908	DPM2	CDG1U	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein-coding
41328	chr11	65911521	65912730	+	0	NA	Intergenic	Intergenic	6937	NM_031450	83638		NM_031450	ENSG00000175573	C11orf68	BLES03|P5326	chromosome 11 open reading frame 68	protein-coding
145434	chr20	43468651	43469180	+	0	NA	Intergenic	AluJb|SINE|Alu	11019	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
153985	chr22	30385071	30385630	+	0	NA	intron (NM_001017981, intron 4 of 8)	AluY|SINE|Alu	2061	NM_001017981	200312		NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
101990	chr17	74761451	74761830	+	0	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	13012	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
58184	chr12	125000121	125000380	+	0	NA	intron (NM_080626, intron 1 of 2)	L1MA10|LINE|L1	6605	NM_080626	140707		NM_080626	ENSG00000184992	BRI3BP	BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19	BRI3 binding protein	protein-coding
157151	chr22	42859201	42859680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2167	NM_014570	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
42383	chr11	68843721	68844700	+	0	NA	Intergenic	CpG	-2279	NM_001031847	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
78714	chr15	98548071	98548780	+	0	NA	Intergenic	CpG	-34089	NM_182562	283777		NM_182562	ENSG00000293555	FAM169BP	FAM169B	protein FAM169B	pseudo
226113	chr9	62897351	62898480	+	0	NA	non-coding (NR_122077, exon 1 of 3)	non-coding (NR_122077, exon 1 of 3)	172	NR_122077	403323		NM_203449		LERFS	-	lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting	ncRNA
184155	chr5	95634821	95635080	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-11827	NM_001375394	317671		NM_173362	ENSG00000175449	RFESD	-	Rieske Fe-S domain containing	protein-coding
23408	chr1	228275551	228277000	+	0	NA	intron (NM_052843, intron 21 of 80)	CpG-2337	-62611	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
181476	chr5	42767471	42767750	+	0	NA	intron (NM_001134848, intron 3 of 8)	intron (NM_001134848, intron 3 of 8)	10792	NM_001134848	100129792		NM_001134848	ENSG00000198865	CCDC152	CH5400	coiled-coil domain containing 152	protein-coding
166019	chr3	108301451	108302150	+	0	NA	promoter-TSS (NM_007072)	promoter-TSS (NM_007072)	-685	NM_007072	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
156741	chr22	41822371	41823550	+	0	NA	intron (NM_024821, intron 6 of 6)	intron (NM_024821, intron 6 of 6)	-10145	NM_004599	6721		NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding
23160	chr1	226732821	226734030	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	5750	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
66772	chr14	64544921	64545380	+	0	NA	Intergenic	Intergenic	4682	NM_021979	3306		NM_021979	ENSG00000126803	HSPA2	HSP70-2|HSP70-3	heat shock protein family A (Hsp70) member 2	protein-coding
78675	chr15	95455801	95456030	+	0	NA	intron (NR_027133, intron 3 of 5)	intron (NR_027133, intron 3 of 5)	22822	NR_027133	145820		NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
163077	chr3	50081051	50081650	+	0	NA	Intergenic	AluSp|SINE|Alu	-7569	NR_036627	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
99516	chr17	50274451	50275030	+	0	NA	intron (NM_001168215, intron 2 of 5)	(GTGGAG)n|Simple_repeat|Simple_repeat	274	NM_153229	162461		NM_153229	ENSG00000167105	TMEM92	-	transmembrane protein 92	protein-coding
149543	chr21	33059521	33059780	+	0	NA	intron (NR_104056, intron 2 of 4)	intron (NR_104056, intron 2 of 4)	1821	NR_104056	101930746		NR_104056	ENSG00000232539	LINC00945	-	long intergenic non-protein coding RNA 945	ncRNA
59969	chr13	32001301	32001500	+	0	NA	Intergenic	Intergenic	30239	NR_103839	100507099		NR_103839		FRY-AS1	-	FRY antisense RNA 1	ncRNA
146740	chr20	50794341	50796180	+	0	NA	intron (NM_198799, intron 1 of 4)	CpG	199	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
2632	chr1	10215921	10216180	+	0	NA	intron (NM_001365952, intron 1 of 48)	MIR|SINE|MIR	4434	NM_001365952	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
238746	chrX	154328571	154329030	+	0	NA	intron (NM_001145933, intron 12 of 12)	MER68B|LTR|ERVL	23630	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
154963	chr22	37266851	37268180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-14993	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
147150	chr20	56411621	56412750	+	0	NA	promoter-TSS (NM_001164115)	promoter-TSS (NM_001164115)	-75	NM_001164115	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
141578	chr2	241598571	241598730	+	0	NA	intron (NM_001164356, intron 4 of 4)	MER1B|DNA|hAT-Charlie	18851	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
23195	chr1	226989351	226989730	+	0	NA	TTS (NM_001366010)	TTS (NM_001366010)	49246	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
30356	chr10	77844871	77845030	+	0	NA	intron (NM_004747, intron 5 of 31).2	L2a|LINE|L2	81805	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
231858	chr9	132879771	132880280	+	0	NA	promoter-TSS (NM_001371773)	promoter-TSS (NM_001371773)	-979	NM_001371771	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
183331	chr5	76726901	76727300	+	0	NA	intron (NM_001992, intron 1 of 1)	intron (NM_001992, intron 1 of 1)	10974	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
130456	chr2	85439801	85440400	+	0	NA	Intergenic	Intergenic	21169	NM_201594								
31504	chr10	96685021	96685480	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	35264	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
14209	chr1	143190301	143191300	+	0	NA	Intergenic	Intergenic	231792	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
104025	chr17	80123101	80123730	+	0	NA	Intergenic	Intergenic	21834	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
229167	chr9	114507301	114508100	+	0	NA	Intergenic	Intergenic	-2227	NM_015404	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
10870	chr1	78003121	78003530	+	0	NA	intron (NM_001317100, intron 2 of 3)	intron (NM_001317100, intron 2 of 3)	-1503	NM_001317103	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
105423	chr17	82865471	82865630	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-25528	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
29388	chr10	70121071	70121550	+	0	NA	intron (NM_032797, intron 3 of 8)	intron (NM_032797, intron 3 of 8)	11515	NM_032797	84883		NM_032797	ENSG00000042286	AIFM2	AMID|FSP1|PRG3	apoptosis inducing factor mitochondria associated 2	protein-coding
64703	chr14	34043571	34044350	+	0	NA	Intergenic	Intergenic	-92886	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
183004	chr5	72319841	72321230	+	0	NA	promoter-TSS (NM_015084)	promoter-TSS (NM_015084)	162	NM_024754	79810		NM_024754	ENSG00000049883	PTCD2	-	pentatricopeptide repeat domain 2	protein-coding
65180	chr14	49609121	49609580	+	0	NA	intron (NM_152329, intron 3 of 3)	AluSx1|SINE|Alu	10410	NM_152329	122769		NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
150102	chr21	37444221	37445100	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	24361	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
148662	chr21	6119021	6119430	+	0	NA	exon (NM_001320643, exon 11 of 14)	exon (NM_001320643, exon 11 of 14)	8094	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
136162	chr2	174344751	174345330	+	0	NA	Intergenic	Intergenic	10086	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
179835	chr5	476671	477400	+	0	NA	intron (NM_001284351, intron 11 of 16)	intron (NM_001284351, intron 11 of 16)	3799	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
100543	chr17	62533351	62533550	+	0	NA	intron (NM_001375270, intron 6 of 21)	AluJo|SINE|Alu	52337	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
193524	chr6	30589071	30589430	+	0	NA	intron (NM_001090, intron 19 of 23).3	AluSz|SINE|Alu	4918	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
18839	chr1	167707501	167707800	+	0	NA	3' UTR (NM_052862, exon 7 of 7)	3' UTR (NM_052862, exon 7 of 7)	-14332	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
8654	chr1	41804171	41804980	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	114347	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
29512	chr10	70667351	70667450	+	0	NA	Intergenic	LTR73|LTR|ERV1	-5106	NM_139155	140766		NM_080722	ENSG00000138316	ADAMTS14	-	ADAM metallopeptidase with thrombospondin type 1 motif 14	protein-coding
28097	chr10	43387671	43388230	+	0	NA	intron (NM_001098204, intron 3 of 3)	intron (NM_001098204, intron 3 of 3)	8881	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
232823	chr9	136727501	136729400	+	0	NA	promoter-TSS (NR_003672)	promoter-TSS (NR_003672)	-266	NR_024543	84973		NM_032887	ENSG00000233016	SNHG7	NCRNA00061	small nucleolar RNA host gene 7	ncRNA
175752	chr4	77754301	77754500	+	0	NA	intron (NM_144571, intron 5 of 11)	L1ME2|LINE|L1	64664	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
201140	chr6	142903801	142904230	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	41161	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
212871	chr7	130866851	130867430	+	0	NA	Intergenic	Intergenic	9670	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
124410	chr19	58439701	58441500	+	0	NA	promoter-TSS (NM_003433)	promoter-TSS (NM_003433)	-447	NM_003433	7691		NM_003433	ENSG00000131849	ZNF132	pHZ-12	zinc finger protein 132	protein-coding
79080	chr16	170821	171330	+	0	NA	Intergenic	Intergenic	-1801	NM_000517	3040		NM_000517	ENSG00000188536	HBA2	ECYT7|HBA-T2|HBH	hemoglobin subunit alpha 2	protein-coding
187853	chr5	147779671	147779900	+	0	NA	intron (NM_014790, intron 1 of 20)	intron (NM_014790, intron 1 of 20)	2943	NM_001282282	9832		NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
20251	chr1	193472501	193472700	+	0	NA	Intergenic	L2|LINE|L2	167855	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
101646	chr17	68253381	68254230	+	0	NA	intron (NR_144442, intron 4 of 6)	AluSx1|SINE|Alu	-5365	NM_001352903	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
173674	chr4	14925701	14925900	+	0	NA	intron (NR_038857, intron 7 of 7)	intron (NR_038857, intron 7 of 7)	-37631	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
78222	chr15	90646801	90647600	+	0	NA	intron (NR_120372, intron 2 of 3)	intron (NR_120372, intron 2 of 3)	-13034	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
82888	chr16	21597051	21598050	+	0	NA	intron (NM_001288660, intron 1 of 4)	intron (NM_001288660, intron 1 of 4)	329	NM_001288660	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
86713	chr16	67552471	67552830	+	0	NA	Intergenic	L2|LINE|L2	9659	NR_158165	107984813		NR_158165	ENSG00000259804	CTCF-DT	-	CTCF divergent transcript	ncRNA
162508	chr3	48583521	48583930	+	0	NA	exon (NM_000094, exon 40 of 119)	exon (NM_000094, exon 40 of 119)	-4748	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
4230	chr1	19479351	19480480	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	4380	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
179769	chr5	280501	280700	+	0	NA	intron (NM_001267557, intron 2 of 3)	intron (NM_001267557, intron 2 of 3)	8954	NM_001267559	10016		NM_013232	ENSG00000249915	PDCD6	ALG-2|ALG2|PEF1B	programmed cell death 6	protein-coding
234245	chrX	13087151	13088730	+	0	NA	Intergenic	Intergenic	-43320	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
92650	chr17	10327601	10327830	+	0	NA	intron (NM_003802, intron 22 of 40)	intron (NM_003802, intron 22 of 40)	45291	NM_003802	8735		NM_003802	ENSG00000006788	MYH13	MyHC-IIL|MyHC-eo	myosin heavy chain 13	protein-coding
169367	chr3	160421671	160421830	+	0	NA	intron (NM_005496, intron 12 of 22)	intron (NM_005496, intron 12 of 22)	17005	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
27005	chr10	26822851	26822950	+	0	NA	intron (NR_145410, intron 2 of 11)	L1MB4|LINE|L1	38058	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
819	chr1	1564371	1564850	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	10253	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
26142	chr10	13806421	13806680	+	0	NA	intron (NM_018027, intron 4 of 24)	intron (NM_018027, intron 4 of 24)	-98983	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
8911	chr1	43977571	43977730	+	0	NA	3' UTR (NM_001294333, exon 7 of 7)	3' UTR (NM_001294333, exon 7 of 7)	-1552	NM_003780	8704		NM_003780	ENSG00000117411	B4GALT2	B4Gal-T2|B4Gal-T3|beta4Gal-T2	beta-1,4-galactosyltransferase 2	protein-coding
129809	chr2	71510171	71510550	+	0	NA	intron (NM_003494, intron 4 of 54)	intron (NM_003494, intron 4 of 54)	43661	NM_001130987	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
38412	chr11	44980751	44981230	+	0	NA	Intergenic	Intergenic	7088	NR_026681	221122		NR_026681	ENSG00000254654	LINC02685	-	long intergenic non-protein coding RNA 2685	ncRNA
226736	chr9	75962651	75963150	+	0	NA	intron (NM_006200, intron 2 of 20)	MIR|SINE|MIR	72227	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
195681	chr6	38404471	38404630	+	0	NA	intron (NM_001172418, intron 5 of 10)	intron (NM_001172418, intron 5 of 10)	-77046	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
82181	chr16	14934271	14934530	+	0	NA	intron (NR_146231, intron 29 of 38)	L1M4|LINE|L1	-3043	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
176683	chr4	100680471	100680630	+	0	NA	Intergenic	AluY|SINE|Alu	-5437	NR_046811	100874275		NR_046811	ENSG00000250223	LINC01216	EMCN-IT3	long intergenic non-protein coding RNA 1216	ncRNA
224434	chr9	15304801	15305000	+	0	NA	intron (NM_152574, intron 1 of 19)	L2a|LINE|L2	2460	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
197391	chr6	73500721	73501000	+	0	NA	3' UTR (NM_001123226, exon 13 of 13)	3' UTR (NM_001123226, exon 13 of 13)	17578	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
84598	chr16	30663721	30664650	+	0	NA	intron (NM_001105079, intron 6 of 17)	intron (NM_001105079, intron 6 of 17)	5754	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
69445	chr14	94178821	94179280	+	0	NA	intron (NM_020958, intron 2 of 4).2	intron (NM_020958, intron 2 of 4).2	3589	NM_001348142	57718		NM_020958	ENSG00000119698	PPP4R4	CFAP14|KIAA1622|PP4R4	protein phosphatase 4 regulatory subunit 4	protein-coding
45628	chr11	118924101	118925300	+	0	NA	intron (NM_001378214, intron 1 of 8)	intron (NM_001378214, intron 1 of 8)	1226	NR_165445	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
21230	chr1	204190151	204190750	+	0	NA	3' UTR (NM_002256, exon 3 of 3)	3' UTR (NM_002256, exon 3 of 3)	6041	NM_002256	3814		NM_002256	ENSG00000170498	KISS1	HH13|KiSS-1	KiSS-1 metastasis suppressor	protein-coding
100270	chr17	59617321	59617580	+	0	NA	Intergenic	Intergenic	-2239	NM_001288653	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
116985	chr19	18883521	18884180	+	0	NA	intron (NM_021267, intron 3 of 7)	intron (NM_021267, intron 3 of 7)	12308	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
217720	chr8	30247001	30247400	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	90831	NM_006571	10671		NM_006571	ENSG00000104671	DCTN6	WS-3|WS3|p27	dynactin subunit 6	protein-coding
106802	chr18	23938151	23938950	+	0	NA	intron (NM_198129, intron 67 of 74)	intron (NM_198129, intron 67 of 74)	-54337	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
150474	chr21	42614251	42615680	+	0	NA	non-coding (NR_131192, exon 1 of 2)	non-coding (NR_131192, exon 1 of 2)	130	NR_131192	101928233		NR_131192	ENSG00000225431	LINC01671	-	long intergenic non-protein coding RNA 1671	ncRNA
51395	chr12	51954071	51954430	+	0	NA	intron (NM_020327, intron 1 of 8)	intron (NM_020327, intron 1 of 8)	870	NM_020327	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
76249	chr15	73996721	73998000	+	0	NA	intron (NM_033238, intron 1 of 8)	L1MB4|LINE|L1	2644	NM_033244	5371		NM_002675	ENSG00000140464	PML	MYL|PP8675|RNF71|TRIM19	PML nuclear body scaffold	protein-coding
159271	chr3	12959301	12959500	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	8330	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
30405	chr10	78754971	78755130	+	0	NA	Intergenic	Intergenic	312398	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
174486	chr4	39936721	39937180	+	0	NA	intron (NM_001100399, intron 2 of 32)	intron (NM_001100399, intron 2 of 32)	40961	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
30891	chr10	86966051	86967300	+	0	NA	Intergenic	Intergenic	-1807	NM_006829	10974		NM_006829	ENSG00000148671	ADIRF	AFRO|APM2|C10orf116|apM-2	adipogenesis regulatory factor	protein-coding
9435	chr1	48773801	48774000	+	0	NA	intron (NM_001349795, intron 2 of 7)	intron (NM_001349795, intron 2 of 7)	2991	NM_024603	79656		NM_024603	ENSG00000162373	BEND5	C1orf165	BEN domain containing 5	protein-coding
166313	chr3	112676501	112677480	+	0	NA	Intergenic	Intergenic	-35847	NM_199511	151887		NM_178274	ENSG00000091986	CCDC80	CL2|DRO1|LINC01279|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
44600	chr11	108495701	108496200	+	0	NA	intron (NM_153705, intron 1 of 7)	intron (NM_153705, intron 1 of 7)	2434	NM_001363502	143888		NM_153705	ENSG00000178202	POGLUT3	KDELC2	protein O-glucosyltransferase 3	protein-coding
6478	chr1	28359551	28360130	+	0	NA	Intergenic	Intergenic	-9900	NM_001350161	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
1736	chr1	5979201	5979500	+	0	NA	intron (NR_111987, intron 2 of 32)	L2a|LINE|L2	13075	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
28129	chr10	43422851	43422950	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-5460	NR_145740	109616985		NR_145740	ENSG00000221400	SNORD3J	-	small nucleolar RNA, C/D box 3J	snoRNA
173773	chr4	17472371	17472850	+	0	NA	Intergenic	Intergenic	39480	NM_000320	5860		NM_000320	ENSG00000151552	QDPR	DHPR|HDHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
96146	chr17	39673471	39674050	+	0	NA	intron (NM_033419, intron 5 of 7)	intron (NM_033419, intron 5 of 7)	5307	NM_002686	5409		NM_002686	ENSG00000141744	PNMT	PENT|PNMTase	phenylethanolamine N-methyltransferase	protein-coding
51360	chr12	51784801	51785000	+	0	NA	intron (NM_001330260, intron 21 of 26)	intron (NM_001330260, intron 21 of 26)	47017	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
83847	chr16	28874471	28874630	+	0	NA	TTS (NM_001308294)	TTS (NM_001308294)	-3938	NM_004320	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
30198	chr10	74681851	74682500	+	0	NA	intron (NM_001369123, intron 9 of 9)	intron (NM_001369123, intron 9 of 9)	-143080	NM_001370139	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
1504	chr1	2785601	2785800	+	0	NA	intron (NM_001242672, intron 4 of 7)	intron (NM_001242672, intron 4 of 7)	15168	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
160926	chr3	36875251	36875600	+	0	NA	intron (NM_014831, intron 7 of 22)	MLT1E3|LTR|ERVL-MaLR	-52925	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
9762	chr1	53392571	53392730	+	0	NA	Intergenic	Intergenic	47370	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
75655	chr15	67544351	67544450	+	0	NA	intron (NM_145160, intron 1 of 21)	MIR3|SINE|MIR	1697	NM_145160	5607		NM_002757	ENSG00000137764	MAP2K5	HsT17454|MAPKK5|MEK5|PRKMK5	mitogen-activated protein kinase kinase 5	protein-coding
103699	chr17	78816901	78817800	+	0	NA	intron (NR_169585, intron 10 of 19)	intron (NR_169585, intron 10 of 19)	23464	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
233697	chrX	1212601	1213500	+	0	NA	promoter-TSS (NM_022148)	promoter-TSS (NM_022148)	-327	NM_001012288	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
43411	chr11	77198671	77198830	+	0	NA	intron (NM_001369365, intron 35 of 49)	intron (NM_001369365, intron 35 of 49)	70504	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
186541	chr5	138448851	138449100	+	0	NA	Intergenic	Intergenic	9918	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
176784	chr4	102506201	102506700	+	0	NA	intron (NM_001382625, intron 1 of 24)	intron (NM_001382625, intron 1 of 24)	-3964	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
149270	chr21	26716051	26716150	+	0	NA	Intergenic	Intergenic	129309	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
16300	chr1	154173221	154173480	+	0	NA	intron (NM_001278188, intron 1 of 6)	intron (NM_001278188, intron 1 of 6)	4854	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
226360	chr9	69971971	69972130	+	0	NA	Intergenic	Charlie13b|DNA|hAT-Charlie	-71531	NM_001347990	256691		NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
101679	chr17	68354421	68355450	+	0	NA	intron (NM_001352901, intron 5 of 11)	intron (NM_001352901, intron 5 of 11)	-58688	NM_001278433	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
231677	chr9	131692701	131693130	+	0	NA	intron (NM_001377935, intron 1 of 26)	MER65-int|LTR|ERV1	16927	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
60848	chr13	45473621	45474380	+	0	NA	intron (NM_031431, intron 1 of 22)	LTR86A1|LTR|ERVL	9061	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
143566	chr20	31634021	31634830	+	0	NA	Intergenic	Intergenic	-3487	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
80564	chr16	2845001	2845700	+	0	NA	Intergenic	Intergenic	-2599	NR_026864	124221		NM_178453	ENSG00000291300	PRSS30P	Disp|TMPRSS8|TMPRSS8P	serine protease 30, pseudogene	pseudo
197436	chr6	73657151	73657650	+	0	NA	Intergenic	AluJo|SINE|Alu	-3408	NM_001382634	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
43150	chr11	75323671	75324230	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	11236	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
206232	chr7	29035351	29035650	+	0	NA	intron (NM_001371256, intron 15 of 16)	intron (NM_001371256, intron 15 of 16)	55533	NR_038965	100506497		NR_038965	ENSG00000272568	CPVL-AS2	-	CPVL antisense RNA 2	ncRNA
192842	chr6	27146601	27148330	+	0	NA	promoter-TSS (NM_001312653)	promoter-TSS (NM_001312653)	-161	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
169955	chr3	179146201	179146400	+	0	NA	intron (NR_125401, intron 1 of 2)	AluJo|SINE|Alu	1673	NR_125401	101928739		NR_125401	ENSG00000229102	PIK3CA-DT	-	PIK3CA divergent transcript	ncRNA
15192	chr1	149176401	149177450	+	0	NA	Intergenic	CpG	24221	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
151828	chr22	18416801	18417000	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-4484	NR_165629	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
136934	chr2	190088871	190089130	+	0	NA	Intergenic	Intergenic	-26271	NM_005259	2660		NM_005259	ENSG00000138379	MSTN	GDF8|MSLHP	myostatin	protein-coding
110158	chr19	1645071	1645230	+	0	NA	intron (NM_003200, intron 3 of 18)	intron (NM_003200, intron 3 of 18)	7465	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
28327	chr10	46349651	46349790	+	0	NA	intron (NR_165820, intron 4 of 7)	AluY|SINE|Alu	12459	NR_165820	653259		NR_165820		AGAP14P	AGAP14|CTGLF11P|bA145E20.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 14, pseudogene	pseudo
35424	chr11	1431251	1431750	+	0	NA	intron (NM_001256630, intron 1 of 19)	intron (NM_001256630, intron 1 of 19)	20348	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
40592	chr11	64450451	64450550	+	0	NA	non-coding (NR_073177, exon 2 of 2)	non-coding (NR_073177, exon 2 of 2)	1443	NR_073177	100996455		NR_073177	ENSG00000181908	LINC02724	-	long intergenic non-protein coding RNA 2724	ncRNA
237121	chrX	106455071	106455230	+	0	NA	Intergenic	L1PA15|LINE|L1	-156780	NM_001184782	55086		NM_018015	ENSG00000147231	RADX	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein-coding
171793	chr4	476451	476950	+	0	NA	intron (NM_133474, intron 1 of 2)	MER50-int|LTR|ERV1	-2491	NR_002451	79963		NM_024903	ENSG00000293360	ABCA11P	ABCA11|EST1133530	ATP binding cassette subfamily A member 11, pseudogene	pseudo
183468	chr5	79247521	79247880	+	0	NA	intron (NM_152405, intron 1 of 10)	AluSx1|SINE|Alu	11569	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
60141	chr13	39699371	39699600	+	0	NA	intron (NM_001145079, intron 12 of 18)	intron (NM_001145079, intron 12 of 18)	-35350	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
176266	chr4	87011621	87011880	+	0	NA	intron (NM_001313960, intron 1 of 17)	intron (NM_001313960, intron 1 of 17)	4749	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
217173	chr8	26302751	26303400	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	9859	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
228929	chr9	113219851	113222650	+	0	NA	promoter-TSS (NM_001859)	promoter-TSS (NM_001859)	27	NM_015258	23307		NM_015258	ENSG00000119321	FKBP15	FKBP133|KIAA0674|PPP1R76	FKBP prolyl isomerase family member 15	protein-coding
169605	chr3	171225201	171225680	+	0	NA	intron (NM_001161560, intron 3 of 31)	MER105|DNA|hAT-Charlie	-118681	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
33945	chr10	124623451	124623750	+	0	NA	exon (NM_014661, exon 5 of 5)	exon (NM_014661, exon 5 of 5)	-80428	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
229239	chr9	114968201	114968800	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-37905	NM_001252290	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
168394	chr3	142129801	142130000	+	0	NA	intron (NM_001178139, intron 1 of 12)	L1MB3|LINE|L1	19644	NM_001375773	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
75214	chr15	64844701	64846030	+	0	NA	intron (NM_001195059, intron 1 of 4)	intron (NM_001195059, intron 1 of 4)	3450	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
182151	chr5	56479731	56480770	+	0	NA	intron (NR_104664, intron 1 of 4)	intron (NR_104664, intron 1 of 4)	1519	NR_104664	102467147		NR_104664	ENSG00000248727	LINC01948	-	long intergenic non-protein coding RNA 1948	ncRNA
39101	chr11	48043651	48044030	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-52942	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
169861	chr3	177200571	177200730	+	0	NA	Intergenic	Intergenic	-3168	NM_001374330	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
65833	chr14	54896321	54896580	+	0	NA	intron (NM_001024024, intron 1 of 6)	intron (NM_001024024, intron 1 of 6)	6374	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
57619	chr12	122497701	122498430	+	0	NA	intron (NM_001350936, intron 1 of 12)	intron (NM_001350936, intron 1 of 12)	2867	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
34164	chr10	128076801	128077200	+	0	NA	intron (NM_001323354, intron 17 of 19)	intron (NM_001323354, intron 17 of 19)	-14575	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
152853	chr22	22207901	22208530	+	0	NA	Intergenic	Intergenic	-36571	NM_001303509	7441		NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	V-set pre-B cell surrogate light chain 1	protein-coding
173120	chr4	6573601	6574180	+	0	NA	Intergenic	Intergenic	-1299	NM_015274	23324		NM_015274	ENSG00000013288	MAN2B2	EpMAN	mannosidase alpha class 2B member 2	protein-coding
238779	chrX	154363621	154363880	+	0	NA	intron (NM_001110556, intron 15 of 47)	L1MB7|LINE|L1	10884	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
108777	chr18	77164671	77165030	+	0	NA	Intergenic	Intergenic	-32067	NM_001025101	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
214340	chr7	149440021	149440730	+	0	NA	intron (NM_015694, intron 4 of 5)	AluJb|SINE|Alu	20687	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
45446	chr11	118442921	118443180	+	0	NA	intron (NM_001197104, intron 1 of 35)	intron (NM_001197104, intron 1 of 35)	6558	NM_005933	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
167708	chr3	130895571	130895730	+	0	NA	intron (NM_001001487, intron 2 of 28)	intron (NM_001001487, intron 2 of 28)	1100	NM_014382	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
214875	chr7	151398951	151399250	+	0	NA	intron (NM_001284261, intron 2 of 4)	intron (NM_001284261, intron 2 of 4)	-10061	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
62499	chr13	99425221	99427380	+	0	NA	Intergenic	Intergenic	70169	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
44479	chr11	105042201	105042600	+	0	NA	intron (NM_001017534, intron 2 of 2)	L3|LINE|CR1	2924	NM_052889	114769		NM_052889	ENSG00000204397	CARD16	COP|COP1|LLID-114769|PSEUDO-ICE	caspase recruitment domain family member 16	protein-coding
102021	chr17	74849921	74850300	+	0	NA	intron (NM_001278553, intron 6 of 11)	intron (NM_001278553, intron 6 of 11)	9774	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
88547	chr16	85454051	85454150	+	0	NA	Intergenic	Intergenic	-147775	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
128022	chr2	47172371	47173150	+	0	NA	5' UTR (NM_001305626, exon 1 of 5)	5' UTR (NM_001305626, exon 1 of 5)	1447	NM_001305626	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
212520	chr7	128792901	128793430	+	0	NA	intron (NM_022742, intron 1 of 17)	LTR107_Mam|LTR|LTR	1197	NM_022742	64753		NM_022742	ENSG00000128596	CCDC136	NAG6	coiled-coil domain containing 136	protein-coding
2609	chr1	10032301	10033700	+	0	NA	promoter-TSS (NM_006048)	promoter-TSS (NM_006048)	42	NM_006048	10277		NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
38635	chr11	46357421	46358730	+	0	NA	intron (NM_001199266, intron 1 of 30)	Charlie1a|DNA|hAT-Charlie	-3531	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
39808	chr11	61974371	61974730	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-6916	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
64226	chr14	23073621	23074030	+	0	NA	intron (NM_014977, intron 8 of 18)	intron (NM_014977, intron 8 of 18)	-2256	NM_001164816	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
181449	chr5	41858921	41859280	+	0	NA	intron (NR_157114, intron 3 of 15)	Tigger7|DNA|TcMar-Tigger	-10930	NR_046635	100874002		NR_046635	ENSG00000248668	OXCT1-AS1	SARRAH	OXCT1 antisense RNA 1	ncRNA
175880	chr4	80060101	80060700	+	0	NA	intron (NM_001145794, intron 3 of 15)	intron (NM_001145794, intron 3 of 15)	12829	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
90737	chr17	2027001	2027200	+	0	NA	Intergenic	AluSz|SINE|Alu	-1766	NM_178568	146760		NM_178568	ENSG00000185924	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor like 1	protein-coding
40261	chr11	63765671	63766030	+	0	NA	exon (NM_001144936, exon 2 of 5)	exon (NM_001144936, exon 2 of 5)	2925	NM_001144936	65998		NM_023941	ENSG00000188070	ZFTA	C11orf95	zinc finger translocation associated	protein-coding
171694	chr3	197787201	197787750	+	0	NA	non-coding (NR_027840, exon 9 of 9)	non-coding (NR_027840, exon 9 of 9)	-3751	NM_001363887	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
197897	chr6	89349571	89349730	+	0	NA	intron (NM_016021, intron 1 of 7)	intron (NM_016021, intron 1 of 7)	3072	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
207625	chr7	45005171	45005530	+	0	NA	intron (NM_001167934, intron 1 of 8)	intron (NM_001167934, intron 1 of 8)	5149	NM_001363459	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
198090	chr6	90279371	90279730	+	0	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	17293	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
77816	chr15	88623421	88623700	+	0	NA	intron (NM_022767, intron 1 of 3)	intron (NM_022767, intron 1 of 3)	2220	NM_022767	64782		NM_022767	ENSG00000181026	AEN	ISG20L1|pp12744	apoptosis enhancing nuclease	protein-coding
37589	chr11	19345701	19345900	+	0	NA	intron (NM_001111018, intron 1 of 38)	intron (NM_001111018, intron 1 of 38)	564	NM_001111018	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
190318	chr5	179614751	179615280	+	0	NA	intron (NM_001364229, intron 12 of 12).2	intron (NM_001364229, intron 12 of 12).2	8386	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
74340	chr15	58551971	58552130	+	0	NA	intron (NM_000236, intron 6 of 8)	intron (NM_000236, intron 6 of 8)	-53315	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
47517	chr12	4142571	4143500	+	0	NA	Intergenic	Intergenic	-130727	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
220403	chr8	100257651	100257750	+	0	NA	3' UTR (NM_001280539, exon 11 of 11)	3' UTR (NM_001280539, exon 11 of 11)	44493	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
81465	chr16	8895471	8895630	+	0	NA	intron (NR_135826, intron 27 of 30)	intron (NR_135826, intron 27 of 30)	-26538	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
51025	chr12	49746101	49747700	+	0	NA	intron (NM_001098576, intron 1 of 9)	AluSx1|SINE|Alu	5091	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
36823	chr11	9757771	9759010	+	0	NA	promoter-TSS (NR_036485)	promoter-TSS (NR_036485)	97	NR_036485	283104		NR_036485	ENSG00000246273	SBF2-AS1	-	SBF2 antisense RNA 1	ncRNA
183837	chr5	86679551	86679730	+	0	NA	Intergenic	Intergenic	59134	NR_145802	109623460		NR_037402		SNORD138	MIR3607|mir-3607	small nucleolar RNA, C/D box 138	snoRNA
128944	chr2	64599421	64599680	+	0	NA	Intergenic	MIRb|SINE|MIR	-7762	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
36992	chr11	11871701	11872400	+	0	NA	intron (NM_001372093, intron 2 of 29)	MLT1G1|LTR|ERVL-MaLR	30078	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
25933	chr10	11336621	11337000	+	0	NA	TTS (NM_001326324)	TTS (NM_001326324)	7864	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
24048	chr1	235293151	235295030	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-33126	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
163226	chr3	50257901	50258530	+	0	NA	intron (NM_002070, intron 8 of 8)	intron (NM_002070, intron 8 of 8)	9156	NR_110702	101928931		NR_110702		SEMA3B-AS1	-	SEMA3B antisense RNA 1 (head to head)	ncRNA
20771	chr1	201012001	201012200	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	11614	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
232241	chr9	134388951	134389050	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	9589	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
212377	chr7	127859551	127859850	+	0	NA	intron (NM_014390, intron 12 of 23)	intron (NM_014390, intron 12 of 23)	-137809	NR_027330	27099		NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
81490	chr16	8942621	8942880	+	0	NA	intron (NM_003470, intron 1 of 30)	AluJr|SINE|Alu	-6111	NM_001286457	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
75722	chr15	68194321	68194580	+	0	NA	TTS (NM_016166)	TTS (NM_016166)	10882	NM_033429	91860		NM_033429	ENSG00000129007	CALML4	NY-BR-20	calmodulin like 4	protein-coding
118641	chr19	37295551	37295880	+	0	NA	Intergenic	Intergenic	-17122	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
139425	chr2	222816451	222816780	+	0	NA	Intergenic	Intergenic	-44421	NM_203372	2181		NM_004457	ENSG00000123983	ACSL3	ACS3|FACL3|LACS 3|LACS3|PRO2194	acyl-CoA synthetase long chain family member 3	protein-coding
145844	chr20	45880621	45881980	+	0	NA	promoter-TSS (NM_080603)	promoter-TSS (NM_080603)	73	NM_080603	90204		NM_080603	ENSG00000168612	ZSWIM1	C20orf162	zinc finger SWIM-type containing 1	protein-coding
199183	chr6	111767601	111768750	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-8258	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
143598	chr20	31699201	31699800	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-22007	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
66252	chr14	61355001	61355200	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	33657	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
12055	chr1	98388071	98389050	+	0	NA	Intergenic	Intergenic	177849	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
125531	chr2	12965371	12965930	+	0	NA	Intergenic	Intergenic	41363	NR_038434	100506474		NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
116492	chr19	18123471	18123830	+	0	NA	exon (NM_015016, exon 7 of 27)	exon (NM_015016, exon 7 of 27)	-24834	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
156412	chr22	41195101	41195680	+	0	NA	intron (NR_110514, intron 2 of 2)	intron (NR_110514, intron 2 of 2)	2111	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
94293	chr17	28725001	28725200	+	0	NA	TTS (NM_000984)	TTS (NM_000984)	1133	NM_138463	116238		NM_138463	ENSG00000160606	TLCD1	-	TLC domain containing 1	protein-coding
205350	chr7	12730501	12730700	+	0	NA	Intergenic	L1MA7|LINE|L1	42967	NM_005738	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
36781	chr11	9446071	9446500	+	0	NA	3' UTR (NM_006391, exon 25 of 25)	3' UTR (NM_006391, exon 25 of 25)	14413	NR_036539	644656		NR_036539	ENSG00000268403	LOC644656	-	uncharacterized LOC644656	ncRNA
166160	chr3	111603751	111604050	+	0	NA	intron (NR_134917, intron 7 of 14)	intron (NR_134917, intron 7 of 14)	-8554	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
141986	chr20	1390271	1390430	+	0	NA	intron (NM_000801, intron 2 of 4)	(GGGGAGG)n|Simple_repeat|Simple_repeat	2611	NR_106929	102465524		NR_106929	ENSG00000284436	MIR6869	hsa-mir-6869	microRNA 6869	ncRNA
7264	chr1	32363151	32363330	+	0	NA	promoter-TSS (NM_001167676)	promoter-TSS (NM_001167676)	701	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
13768	chr1	117061851	117062350	+	0	NA	intron (NM_003594, intron 2 of 22)	intron (NM_003594, intron 2 of 22)	1774	NM_003594	8458		NM_003594	ENSG00000116830	TTF2	F2|HuF2|ZGRF6	transcription termination factor 2	protein-coding
125816	chr2	24122051	24122150	+	0	NA	intron (NM_199346, intron 2 of 4)	AluSq2|SINE|Alu	1234	NM_199346	375189		NM_199346	ENSG00000176732	PFN4	-	profilin family member 4	protein-coding
228194	chr9	97698721	97699130	+	0	NA	TTS (NR_147055)	TTS (NR_147055)	-1516	NR_149094	7507		NM_000380	ENSG00000136936	XPA	XP1|XPAC	XPA, DNA damage recognition and repair factor	protein-coding
183496	chr5	79278201	79278750	+	0	NA	intron (NM_152405, intron 2 of 10)	AluJb|SINE|Alu	42344	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
176298	chr4	87353501	87353700	+	0	NA	intron (NM_016245, intron 5 of 6)	intron (NM_016245, intron 5 of 6)	-30718	NM_001136230	345275		NM_178135	ENSG00000170509	HSD17B13	FLDP|HMFN0376|NIIL497|SCDR9|SDR16C3	hydroxysteroid 17-beta dehydrogenase 13	protein-coding
20948	chr1	202254671	202255050	+	0	NA	intron (NM_001017404, intron 4 of 15)	FLAM_C|SINE|Alu	40705	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
186325	chr5	134630221	134631350	+	0	NA	intron (NM_016103, intron 1 of 6)	AluSz|SINE|Alu	2043	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
4121	chr1	19323051	19323150	+	0	NA	intron (NR_109848, intron 3 of 9)	AluJo|SINE|Alu	10774	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
161097	chr3	38159771	38160000	+	0	NA	Intergenic	Intergenic	-5652	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
209728	chr7	87154151	87154550	+	0	NA	intron (NM_021145, intron 2 of 19)	intron (NM_021145, intron 2 of 19)	1796	NM_021145	9988		NM_021145	ENSG00000135164	DMTF1	DMP1|DMTF|MRUL|hDMP1	cyclin D binding myb like transcription factor 1	protein-coding
13539	chr1	115073121	115073780	+	0	NA	intron (NM_001308315, intron 1 of 6)	intron (NM_001308315, intron 1 of 6)	16050	NM_001308315	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
66434	chr14	61530221	61530480	+	0	NA	intron (NM_006255, intron 11 of 13)	intron (NM_006255, intron 11 of 13)	39844	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
52940	chr12	57435171	57435930	+	0	NA	intron (NM_005538, intron 1 of 1)	intron (NM_005538, intron 1 of 1)	766	NM_005538	3626		NM_005538	ENSG00000175189	INHBC	IHBC	inhibin subunit beta C	protein-coding
144056	chr20	33667601	33669080	+	0	NA	3' UTR (NM_001024675, exon 1 of 1)	3' UTR (NM_001024675, exon 1 of 1)	1397	NM_001024675	170487		NM_001024675	ENSG00000288649	ACTL10	C20orf134|dJ63M2.2	actin like 10	protein-coding
136078	chr2	173148401	173148880	+	0	NA	intron (NM_133646, intron 2 of 11)	intron (NM_133646, intron 2 of 11)	72794	NM_016653	51776		NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
148916	chr21	9114851	9115250	+	0	NA	intron (NR_038329, intron 2 of 2)	intron (NR_038329, intron 2 of 2)	14711	NR_038327	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
103970	chr17	79989371	79989530	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	-38597	NM_001271845	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
32113	chr10	101218701	101219100	+	0	NA	Intergenic	Intergenic	10060	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
219253	chr8	67311021	67311280	+	0	NA	intron (NM_006421, intron 1 of 38)	SVA_F|Retroposon|SVA	32631	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
236910	chrX	86871671	86871830	+	0	NA	Intergenic	Intergenic	608782	NM_001139515	117154		NM_053281	ENSG00000126733	DACH2	-	dachshund family transcription factor 2	protein-coding
203018	chr6	163457671	163459030	+	0	NA	intron (NM_206854, intron 2 of 6)	MIR|SINE|MIR	43632	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
203494	chr7	598051	598430	+	0	NA	intron (NM_001164759, intron 6 of 10)	intron (NM_001164759, intron 6 of 10)	-4605	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
213210	chr7	132882501	132883180	+	0	NA	intron (NM_017812, intron 5 of 7)	intron (NM_017812, intron 5 of 7)	123870	NR_134332	100506937		NR_134332	ENSG00000225881	LOC100506937	-	uncharacterized LOC100506937	ncRNA
37492	chr11	18401051	18401750	+	0	NA	intron (NM_005566, intron 4 of 7)	AluSq2|SINE|Alu	5134	NM_001165414	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
130985	chr2	87694071	87694230	+	0	NA	Intergenic	L1ME1|LINE|L1	-6833	NR_160651	730268		NR_160651	ENSG00000234231	ANAPC1P4	-	ANAPC1 pseudogene 4	pseudo
4659	chr1	22350271	22350430	+	0	NA	Intergenic	Intergenic	84111	NR_039613	100616433		NR_039613	ENSG00000266564	MIR4418	-	microRNA 4418	ncRNA
24992	chr10	3125271	3126230	+	0	NA	intron (NM_001345944, intron 16 of 21)	intron (NM_001345944, intron 16 of 21)	-8354	NR_132758	106633806		NR_132758		SNORD142	SNORA85|SNORD174|ZL68	small nucleolar RNA, C/D box 142	snoRNA
105643	chr18	961701	962000	+	0	NA	Intergenic	Intergenic	-33857	NR_146724	388456		NR_146724	ENSG00000259837	LINC01904	-	long intergenic non-protein coding RNA 1904	ncRNA
90096	chr16	90036251	90036550	+	0	NA	exon (NM_001481, exon 6 of 11)	exon (NM_001481, exon 6 of 11)	-6499	NR_122031	750		NM_001214	ENSG00000221819	GAS8-AS1	C16orf3	GAS8 antisense RNA 1	ncRNA
91798	chr17	7026971	7027130	+	0	NA	exon (NM_181844, exon 8 of 9)	exon (NM_181844, exon 8 of 9)	4000	NM_181844	255877		NM_181844	ENSG00000161940	BCL6B	BAZF|ZBTB28|ZNF62	BCL6B transcription repressor	protein-coding
24823	chr10	322271	322500	+	0	NA	intron (NM_014974, intron 31 of 36)	CpG	142391	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
101426	chr17	67403771	67403930	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSx1|SINE|Alu	26569	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
36048	chr11	2934471	2935530	+	0	NA	Intergenic	Intergenic	-5580	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
25236	chr10	5977001	5978550	+	0	NA	promoter-TSS (NM_002189)	promoter-TSS (NM_002189)	-164	NM_001256765	3601		NM_002189	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor subunit alpha	protein-coding
225238	chr9	34217671	34219030	+	0	NA	intron (NR_033243, intron 2 of 7)	intron (NR_033243, intron 2 of 7)	39307	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
214302	chr7	149150371	149150530	+	0	NA	intron (NM_170686, intron 1 of 5)	AluSz|SINE|Alu	2997	NM_170686	57541		NM_020781	ENSG00000197024	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding
127505	chr2	42289571	42290000	+	0	NA	intron (NM_019063, intron 11 of 22)	intron (NM_019063, intron 11 of 22)	70253	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
87179	chr16	69374301	69374700	+	0	NA	intron (NM_005652, intron 3 of 9)	AluJr4|SINE|Alu	11507	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
17124	chr1	156169721	156169980	+	0	NA	intron (NM_001370567, intron 9 of 13)	AluSc5|SINE|Alu	15302	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
56533	chr12	116759701	116760200	+	0	NA	intron (NM_001382266, intron 5 of 10)	L1PB1|LINE|L1	21635	NM_032814	84900		NM_032814	ENSG00000135119	RNFT2	TMEM118	ring finger protein, transmembrane 2	protein-coding
105744	chr18	2746801	2747200	+	0	NA	intron (NM_015295, intron 29 of 47)	intron (NM_015295, intron 29 of 47)	91274	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
95454	chr17	36167701	36167900	+	0	NA	intron (NM_001001417, intron 12 of 13).3	intron (NM_001001417, intron 12 of 13).3	8778	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
20092	chr1	186482771	186482930	+	0	NA	Intergenic	Intergenic	-21736	NM_002597	5132		NM_002597	ENSG00000116703	PDC	MEKA|PHD|PhLOP|PhLP	phosducin	protein-coding
200828	chr6	137978401	137978930	+	0	NA	Intergenic	Intergenic	-32865	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
147070	chr20	53748971	53749530	+	0	NA	Intergenic	Intergenic	126459	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
57046	chr12	120835151	120835450	+	0	NA	intron (NM_139015, intron 1 of 10)	intron (NM_139015, intron 1 of 10)	69058	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
24781	chr1	248871901	248872100	+	0	NA	Intergenic	MER31B|LTR|ERV1	-12915	NM_001350072	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
124639	chr2	1797671	1798950	+	0	NA	intron (NM_001329845, intron 23 of 24)	intron (NM_001329845, intron 23 of 24)	-53795	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
85285	chr16	48605651	48606150	+	0	NA	intron (NM_153029, intron 1 of 6)	intron (NM_153029, intron 1 of 6)	4280	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
132548	chr2	106190871	106191030	+	0	NA	intron (NR_165308, intron 1 of 14)	intron (NR_165308, intron 1 of 14)	3351	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
94996	chr17	32356751	32357130	+	0	NA	intron (NM_001098507, intron 2 of 11)	AluJb|SINE|Alu	6783	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
134328	chr2	136091701	136092100	+	0	NA	Intergenic	Intergenic	24335	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
157071	chr22	42603621	42604080	+	0	NA	intron (NM_001278657, intron 1 of 8)	L1PA17|LINE|L1	11033	NM_178136	84271		NM_032311	ENSG00000100227	POLDIP3	PDIP3|PDIP46|SKAR	DNA polymerase delta interacting protein 3	protein-coding
55366	chr12	104286421	104287650	+	0	NA	promoter-TSS (NM_182729)	promoter-TSS (NM_182729)	3	NM_182743	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
72531	chr15	34315721	34316080	+	0	NA	intron (NM_133647, intron 1 of 24)	AluSc8|SINE|Alu	2920	NM_005135	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
67934	chr14	74764521	74764780	+	0	NA	intron (NM_019589, intron 1 of 20)	intron (NM_019589, intron 1 of 20)	1334	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
220265	chr8	97707921	97708650	+	0	NA	intron (NM_178812, intron 8 of 11)	AluSz|SINE|Alu	64101	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
185473	chr5	131287371	131287750	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluJb|SINE|Alu	23507	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
192800	chr6	26592721	26592980	+	0	NA	Intergenic	Intergenic	-4103	NM_013375	29777		NM_013375	ENSG00000146109	ABT1	Esf2|hABT1	activator of basal transcription 1	protein-coding
35331	chr11	1053101	1053830	+	0	NA	intron (NR_160890, intron 2 of 3)	intron (NR_160890, intron 2 of 3)	3585	NR_160890	101927503		NM_001323425	ENSG00000254872	LINC02688	-	long intergenic non-protein coding RNA 2688	ncRNA
31339	chr10	93072321	93072580	+	0	NA	Intergenic	CpG	-1025	NM_057157	1592		NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	cytochrome P450 family 26 subfamily A member 1	protein-coding
184075	chr5	93578951	93579500	+	0	NA	intron (NR_109818, intron 1 of 6)	CpG	2095	NR_109824	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
95232	chr17	35288921	35289600	+	0	NA	Intergenic	L1MB7|LINE|L1	46188	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
53752	chr12	68661501	68661800	+	0	NA	3' UTR (NM_015646, exon 8 of 8)	3' UTR (NM_015646, exon 8 of 8)	25209	NR_038930	100507250		NR_038930	ENSG00000247363	LOC100507250	-	uncharacterized LOC100507250	ncRNA
163157	chr3	50160001	50160730	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	1346	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
127164	chr2	38115271	38115500	+	0	NA	Intergenic	Intergenic	-15720	NR_027252	285154		NM_173652	ENSG00000232973	CYP1B1-AS1	C2orf58	CYP1B1 antisense RNA 1	ncRNA
125977	chr2	25276481	25278100	+	0	NA	intron (NR_135490, intron 4 of 23)	CpG	-24975	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
180220	chr5	1521901	1522680	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	1670	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
174955	chr4	49152001	49152400	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	165558	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
178015	chr4	139315151	139315450	+	0	NA	intron (NM_057175, intron 1 of 19)	AluJb|SINE|Alu	-12749	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
27834	chr10	38365901	38366200	+	0	NA	intron (NR_003086, intron 5 of 7)	MIRb|SINE|MIR	9670	NR_003086	158160		NM_182829	ENSG00000290439	HSD17B7P2	HSD17B7|Hsd17b_2|bA291L22.1	hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2	pseudo
43897	chr11	88484821	88485380	+	0	NA	Intergenic	L1M2b|LINE|L1	-19476	NR_049724	100873989		NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
73596	chr15	44544201	44545130	+	0	NA	intron (NM_001284336, intron 2 of 5)	AluSp|SINE|Alu	7518	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
77794	chr15	87645451	87645550	+	0	NA	Intergenic	Intergenic	68571	NR_026869	145978		NM_152454	ENSG00000259527	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA
232082	chr9	133540101	133540300	+	0	NA	intron (NM_014694, intron 5 of 18)	intron (NM_014694, intron 5 of 18)	5496	NM_014694	9719		NM_014694	ENSG00000197859	ADAMTSL2	ADAMTSL-2|GPHYSD1	ADAMTS like 2	protein-coding
113380	chr19	8835201	8835400	+	0	NA	Intergenic	AluSz|SINE|Alu	-2996	NM_144693	148156		NM_144693	ENSG00000167785	ZNF558	-	zinc finger protein 558	protein-coding
114653	chr19	13043321	13043580	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	18671	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
98474	chr17	47188221	47190130	+	0	NA	non-coding (NR_148340, exon 1 of 17)	non-coding (NR_148340, exon 1 of 17)	120	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
66321	chr14	61418601	61419350	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	97532	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
30417	chr10	78977651	78977750	+	0	NA	intron (NR_015429, intron 3 of 7)	L2c|LINE|L2	89748	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
40489	chr11	64254171	64255430	+	0	NA	exon (NM_000932, exon 3 of 31)	exon (NM_000932, exon 3 of 31)	3270	NM_001184883	5331		NM_000932	ENSG00000149782	PLCB3	SMDCD	phospholipase C beta 3	protein-coding
108559	chr18	74849171	74849530	+	0	NA	intron (NM_001384475, intron 4 of 8)	AluSq4|SINE|Alu	218387	NM_001146190	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
223357	chr8	143864121	143864380	+	0	NA	exon (NM_031308, exon 2 of 2)	exon (NM_031308, exon 2 of 2)	14217	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238557	chrX	153796901	153797430	+	0	NA	intron (NR_037927, intron 4 of 7)	intron (NR_037927, intron 4 of 7)	2497	NM_006280	6748		NM_006280	ENSG00000180879	SSR4	CDG1Y|TRAPD	signal sequence receptor subunit 4	protein-coding
171085	chr3	195485601	195486480	+	0	NA	Intergenic	Intergenic	-43020	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
222269	chr8	133290001	133290450	+	0	NA	intron (NM_001374844, intron 1 of 15)	intron (NM_001374844, intron 1 of 15)	6465	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
174605	chr4	40267221	40267480	+	0	NA	Intergenic	MER41A|LTR|ERV1	-39835	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
148877	chr21	8447921	8448280	+	0	NA	Intergenic	CpG	6954	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
3099	chr1	12205071	12205230	+	0	NA	intron (NM_001066, intron 9 of 9)	L2b|LINE|L2	13437	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
14133	chr1	121002721	121003180	+	0	NA	intron (NR_135813, intron 2 of 2)	AluJb|SINE|Alu	39302	NR_160532	105369199		NR_160532		LOC105369199	-	NBPF member 6 pseudogene	pseudo
39930	chr11	62533571	62534130	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	11814	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
114903	chr19	13929901	13930300	+	0	NA	exon (NM_017721, exon 27 of 29)	exon (NM_017721, exon 27 of 29)	8317	NM_001370095	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
60023	chr13	32540671	32540830	+	0	NA	Intergenic	L1MC3|LINE|L1	-1865	NM_033111	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
213037	chr7	131041971	131042130	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	64980	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
70227	chr14	100653371	100653980	+	0	NA	Intergenic	Intergenic	-3593	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
198109	chr6	90297951	90298430	+	0	NA	Intergenic	Intergenic	-1282	NM_001170794	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
26164	chr10	14385821	14386280	+	0	NA	Intergenic	Intergenic	-2773	NR_036181	100422843		NR_036181	ENSG00000266321	MIR4293	-	microRNA 4293	ncRNA
124701	chr2	3578901	3579900	+	0	NA	intron (NM_001011, intron 5 of 6)	intron (NM_001011, intron 5 of 6)	4140	NM_001011	6201		NM_001011	ENSG00000171863	RPS7	DBA8|S7|eS7	ribosomal protein S7	protein-coding
177539	chr4	118850101	118850930	+	0	NA	promoter-TSS (NM_001286754)	promoter-TSS (NM_001286754)	-166	NM_001286754	171024		NM_133477	ENSG00000172403	SYNPO2	SYISL	synaptopodin 2	protein-coding
162516	chr3	48587951	48588550	+	0	NA	intron (NM_000094, intron 21 of 118)	intron (NM_000094, intron 21 of 118)	7079	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
114754	chr19	13431001	13431300	+	0	NA	intron (NM_023035, intron 3 of 46)	L2a|LINE|L2	75329	NM_000068	773		NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|DEE42|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6	calcium voltage-gated channel subunit alpha1 A	protein-coding
160490	chr3	30616571	30617150	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	10259	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
144092	chr20	33778251	33779030	+	0	NA	intron (NR_104259, intron 10 of 13)	intron (NR_104259, intron 10 of 13)	32459	NR_110623	101929746		NR_110623	ENSG00000230753	ZNF341-AS1	-	ZNF341 antisense RNA 1	ncRNA
202987	chr6	162339021	162339280	+	0	NA	intron (NM_013987, intron 2 of 10)	SVA_F|Retroposon|SVA	-387982	NM_152410	135138		NM_152410	ENSG00000112530	PACRG	BUG21|GLUP|HAK005771|PACRG2.1|PARK2CRG|pf12	parkin coregulated	protein-coding
132989	chr2	111510251	111510650	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-15289	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
107182	chr18	35582901	35583100	+	0	NA	intron (NM_001384444, intron 1 of 11)	intron (NM_001384444, intron 1 of 11)	1260	NM_001384445	2589		NM_020474	ENSG00000141429	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
162831	chr3	49173951	49174050	+	0	NA	intron (NM_173546, intron 2 of 5)	intron (NM_173546, intron 2 of 5)	2402	NM_173546	200942		NM_173546	ENSG00000185909	KLHDC8B	CHL	kelch domain containing 8B	protein-coding
89918	chr16	89713601	89713800	+	0	NA	intron (NR_036480, intron 2 of 3)	MER30|DNA|hAT-Charlie	1844	NR_036480	100128881		NR_036480	ENSG00000261373	VPS9D1-AS1	MYU	VPS9D1 antisense RNA 1	ncRNA
44548	chr11	108121001	108122300	+	0	NA	promoter-TSS (NM_000019)	promoter-TSS (NM_000019)	83	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
61186	chr13	49240121	49240650	+	0	NA	intron (NR_135318, intron 1 of 1)	MIR|SINE|MIR	7455	NR_135318	105370203		NR_135318	ENSG00000288743	LOC105370203	-	uncharacterized LOC105370203	ncRNA
110162	chr19	1647021	1647280	+	0	NA	intron (NM_003200, intron 2 of 18)	intron (NM_003200, intron 2 of 18)	5465	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
113234	chr19	8483671	8484100	+	0	NA	intron (NM_031203, intron 14 of 16)	AluJb|SINE|Alu	18755	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
174861	chr4	48698121	48698830	+	0	NA	intron (NM_015030, intron 2 of 63)	intron (NM_015030, intron 2 of 63)	81804	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
183452	chr5	79229251	79230030	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-6491	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
62582	chr13	99988571	99989080	+	0	NA	Intergenic	Intergenic	7041	NM_007129	7546		NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
190581	chr5	181052601	181053700	+	0	NA	intron (NM_152547, intron 4 of 10)	CpG	-9666	NR_107056	102465882		NR_107056	ENSG00000277912	MIR8089	hsa-mir-8089	microRNA 8089	ncRNA
205729	chr7	23488801	23489130	+	0	NA	Intergenic	(TATATACG)n|Simple_repeat|Simple_repeat	-1423	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
135727	chr2	169364351	169365580	+	0	NA	Intergenic	Intergenic	-2431	NM_004525	4036		NM_004525	ENSG00000081479	LRP2	DBS|GP330|LRP-2	LDL receptor related protein 2	protein-coding
62318	chr13	99049351	99049650	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-33715	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
737	chr1	1473451	1473550	+	0	NA	intron (NM_031921, intron 1 of 15)	intron (NM_031921, intron 1 of 15)	1735	NM_031921	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
3409	chr1	15760321	15760580	+	0	NA	intron (NM_001024216, intron 1 of 6)	AluSz|SINE|Alu	1655	NM_001024216	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
144149	chr20	34044871	34045030	+	0	NA	intron (NM_016732, intron 2 of 9)	AluJo|SINE|Alu	-4169	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
6025	chr1	27102621	27103480	+	0	NA	intron (NR_046474, intron 5 of 10)	intron (NR_046474, intron 5 of 10)	52075	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
27017	chr10	26841751	26842500	+	0	NA	intron (NM_001178116, intron 1 of 11)	L1MA9|LINE|L1	18833	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
204512	chr7	4791051	4791150	+	0	NA	intron (NR_157345, intron 16 of 16)	intron (NR_157345, intron 16 of 16)	-2461	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
42872	chr11	73311171	73311730	+	0	NA	exon (NM_014786, exon 1 of 21)	exon (NM_014786, exon 1 of 21)	-2089	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
116456	chr19	18063201	18064030	+	0	NA	intron (NM_005535, intron 13 of 16)	L2c|LINE|L2	23319	NM_005535	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
64892	chr14	35390371	35390530	+	0	NA	Intergenic	Intergenic	14299	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
96853	chr17	42013521	42014700	+	0	NA	intron (NM_003315, intron 1 of 13)	intron (NM_003315, intron 1 of 13)	3055	NM_001144766	7266		NM_003315	ENSG00000168259	DNAJC7	DJ11|DJC7|TPR2|TTC2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding
64923	chr14	35534921	35535900	+	0	NA	exon (NM_032594, exon 1 of 1)	exon (NM_032594, exon 1 of 1)	1246	NM_032594	84684		NM_032594	ENSG00000168348	INSM2	IA-6|IA6|mlt1	INSM transcriptional repressor 2	protein-coding
160761	chr3	32664601	32665030	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-20373	NR_046352	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
71177	chr14	105047471	105047630	+	0	NA	Intergenic	Intergenic	17880	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
140141	chr2	231593771	231594380	+	0	NA	exon (NM_152614, exon 1 of 1)	exon (NM_152614, exon 1 of 1)	1211	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
192214	chr6	18153801	18154000	+	0	NA	intron (NM_001346817, intron 1 of 9)	intron (NM_001346817, intron 1 of 9)	1177	NM_000367	7172		NM_000367	ENSG00000137364	TPMT	TPMTD	thiopurine S-methyltransferase	protein-coding
162337	chr3	47779401	47779750	+	0	NA	intron (NM_003074, intron 1 of 27)	intron (NM_003074, intron 1 of 27)	2318	NM_003074	6599		NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|HYC5|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
28736	chr10	61962601	61963050	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	61126	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
71379	chr14	105503771	105503930	+	0	NA	Intergenic	Intergenic	12601	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
75371	chr15	65631621	65632250	+	0	NA	intron (NM_001301032, intron 1 of 7)	AluSc|SINE|Alu	7980	NM_001301031	9187		NM_004727	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 member 1	protein-coding
194589	chr6	33441851	33441950	+	0	NA	intron (NM_001130066, intron 13 of 17)	intron (NM_001130066, intron 13 of 17)	3569	NR_049800	100847012		NR_049800	ENSG00000284256	MIR5004	mir-5004	microRNA 5004	ncRNA
174367	chr4	38860771	38861250	+	0	NA	Intergenic	L2a|LINE|L2	-4193	NM_006068	10333		NM_006068	ENSG00000174130	TLR6	CD286	toll like receptor 6	protein-coding
164769	chr3	69099801	69100080	+	0	NA	intron (NM_006407, intron 1 of 2)	AluSq2|SINE|Alu	15003	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
201102	chr6	142849671	142850030	+	0	NA	intron (NM_006734, intron 1 of 9)	L2b|LINE|L2	95326	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
32571	chr10	103446621	103446880	+	0	NA	TTS (NM_015916)	TTS (NM_015916)	5620	NR_046344	51063		NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator family member 2	protein-coding
48597	chr12	10318671	10318830	+	0	NA	non-coding (NR_147040, exon 5 of 5)	non-coding (NR_147040, exon 5 of 5)	10880	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
34142	chr10	128051551	128052050	+	0	NA	intron (NM_001323357, intron 3 of 16)	intron (NM_001323357, intron 3 of 16)	4188	NM_001323357	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
78896	chr15	101088621	101089500	+	0	NA	Intergenic	CpG	162988	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
167716	chr3	130947171	130947330	+	0	NA	intron (NM_001199181, intron 7 of 26)	MER5A1|DNA|hAT-Charlie	52700	NM_014382	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
172739	chr4	2832351	2833050	+	0	NA	intron (NM_001145856, intron 11 of 12)	intron (NM_001145856, intron 11 of 12)	-11144	NM_001354759	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
20322	chr1	197615021	197615350	+	0	NA	intron (NR_125340, intron 10 of 19)	L2c|LINE|L2	160295	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
75902	chr15	70022101	70022300	+	0	NA	Intergenic	MER66B|LTR|ERV1	57268	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
49012	chr12	14239301	14239800	+	0	NA	Intergenic	Intergenic	-126082	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
223965	chr9	2008871	2009030	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	-6397	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
85496	chr16	50749451	50749950	+	0	NA	exon (NM_001378753, exon 3 of 18)	exon (NM_001378753, exon 3 of 18)	7285	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
33267	chr10	114517501	114518300	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	9013	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
63430	chr13	114099471	114100400	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-21980	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
6077	chr1	27161671	27162030	+	0	NA	Intergenic	MIRb|SINE|MIR	-6725	NM_003047	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
120709	chr19	45187151	45187850	+	0	NA	Intergenic	Intergenic	8716	NM_212550	388552		NM_212550	ENSG00000189114	BLOC1S3	BLOS3|HPS8|RP	biogenesis of lysosomal organelles complex 1 subunit 3	protein-coding
194660	chr6	33628951	33629050	+	0	NA	intron (NM_002224, intron 1 of 57)	intron (NM_002224, intron 1 of 57)	4745	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
209991	chr7	92851871	92852430	+	0	NA	intron (NR_110088, intron 1 of 1)	intron (NR_110088, intron 1 of 1)	-15577	NM_001145306	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
170869	chr3	192861951	192862300	+	0	NA	intron (NM_178496, intron 1 of 1)	L3|LINE|CR1	55731	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
84954	chr16	31366371	31366530	+	0	NA	intron (NM_000887, intron 14 of 29)	Tigger1|DNA|TcMar-Tigger	11274	NM_000887	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
181629	chr5	49226851	49227000	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1214363	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
53625	chr12	68155651	68156250	+	0	NA	intron (NM_000619, intron 3 of 3)	intron (NM_000619, intron 3 of 3)	3790	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
150140	chr21	38244851	38245200	+	0	NA	intron (NM_001276438, intron 1 of 2)	intron (NM_001276438, intron 1 of 2)	-11673	NM_001276436	3772		NM_002243	ENSG00000157551	KCNJ15	IRKK|KIR1.3|KIR4.2	potassium inwardly rectifying channel subfamily J member 15	protein-coding
110078	chr19	1507671	1508830	+	0	NA	intron (NM_001367197, intron 7 of 12)	intron (NM_001367197, intron 7 of 12)	4769	NM_001367197	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
133285	chr2	113553251	113553550	+	0	NA	intron (NR_146439, intron 1 of 3)	intron (NR_146439, intron 1 of 3)	-10710	NR_121187	103344932		NR_121185	ENSG00000231943	PGM5P4-AS1	FAM233C	PGM5P4 antisense RNA 1	ncRNA
158370	chr22	50473951	50474370	+	0	NA	intron (NM_002972, intron 1 of 40)	CpG	875	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
109141	chr18	80238751	80238950	+	0	NA	intron (NM_032510, intron 1 of 2)	intron (NM_032510, intron 1 of 2)	8664	NM_032510	84552		NM_032510	ENSG00000178184	PARD6G	PAR-6G|PAR6gamma	par-6 family cell polarity regulator gamma	protein-coding
146702	chr20	50555201	50555400	+	0	NA	intron (NM_001278618, intron 1 of 8)	L1MEc|LINE|L1	-30486	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
210910	chr7	101203201	101205080	+	0	NA	Intergenic	Intergenic	-3104	NM_178176	346606		NM_178176	ENSG00000106384	MOGAT3	DC7|DGAT2L2|MGAT3	monoacylglycerol O-acyltransferase 3	protein-coding
126091	chr2	25833001	25833200	+	0	NA	intron (NM_018263, intron 2 of 11)	L1MD2|LINE|L1	-2199	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
158845	chr3	9807821	9809200	+	0	NA	TTS (NM_001198780)	TTS (NM_001198780)	-1405	NM_001025930	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
227333	chr9	89452921	89453180	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	26840	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
98732	chr17	48023801	48024500	+	0	NA	Intergenic	CpG	-8732	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
175796	chr4	77806851	77806950	+	0	NA	intron (NM_001365006, intron 1 of 11)	intron (NM_001365006, intron 1 of 11)	12164	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
217053	chr8	23352801	23353200	+	0	NA	intron (NM_002318, intron 3 of 13)	(GGTGG)n|Simple_repeat|Simple_repeat	16792	NR_038323	100507156		NR_038323	ENSG00000253837	LOXL2-AS1	-	LOXL2 antisense RNA 1	ncRNA
90326	chr17	1137521	1137850	+	0	NA	intron (NM_001322841, intron 1 of 22)	Tigger1|DNA|TcMar-Tigger	-11113	NM_001322840	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
169486	chr3	169748701	169749250	+	0	NA	Intergenic	Intergenic	16085	NR_001566	7012		NR_001566	ENSG00000277925	TERC	DKCA1|PFBMFT2|SCARNA19|TER|TR|TRC3|hTR	telomerase RNA component	ncRNA
80542	chr16	2781971	2782130	+	0	NA	Intergenic	MER21A|LTR|ERVL	-4770	NM_007108	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
182071	chr5	55973921	55974380	+	0	NA	intron (NR_157112, intron 3 of 17)	L3|LINE|CR1	20813	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
88785	chr16	87325551	87325650	+	0	NA	Intergenic	Intergenic	8091	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
188727	chr5	157394351	157394650	+	0	NA	3' UTR (NM_001291721, exon 30 of 30)	3' UTR (NM_001291721, exon 30 of 30)	-48823	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
10666	chr1	70790651	70790750	+	0	NA	Intergenic	Intergenic	84247	NR_125938	101927244		NR_125938	ENSG00000229051	LINC01788	-	long intergenic non-protein coding RNA 1788	ncRNA
213804	chr7	140956251	140956550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-31471	NM_001354609	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
223851	chr9	73101	74130	+	0	NA	intron (NR_121190, intron 1 of 2).2	CpG	925	NR_121190	101929127		NR_121188	ENSG00000277631	PGM5P3-AS1	FAM233B	PGM5P3 antisense RNA 1	ncRNA
80054	chr16	1971201	1972830	+	0	NA	promoter-TSS (NM_006453)	promoter-TSS (NM_006453)	-38	NM_006453	10607		NM_006453	ENSG00000183751	TBL3	SAZD|UTP13	transducin beta like 3	protein-coding
191261	chr6	6003471	6004380	+	0	NA	5' UTR (NM_001278711, exon 1 of 4)	5' UTR (NM_001278711, exon 1 of 4)	119	NM_001278711	51299		NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
148371	chr20	63873651	63873950	+	0	NA	exon (NM_001243895, exon 3 of 6)	exon (NM_001243895, exon 3 of 6)	8530	NR_045090	7165		NM_003288	ENSG00000101150	TPD52L2	D54|TPD54	TPD52 like 2	protein-coding
130492	chr2	85579851	85580350	+	0	NA	intron (NM_003761, intron 2 of 2)	AluSz6|SINE|Alu	2514	NM_003761	8673		NM_003761	ENSG00000118640	VAMP8	EDB|VAMP-8	vesicle associated membrane protein 8	protein-coding
172601	chr4	2487571	2488680	+	0	NA	intron (NM_001185009, intron 2 of 8)	intron (NM_001185009, intron 2 of 8)	18672	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
3765	chr1	16677901	16678400	+	0	NA	Intergenic	Intergenic	-3105	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
158527	chr3	3175171	3176080	+	0	NA	intron (NM_016302, intron 1 of 10)	L1MC3|LINE|L1	4066	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
175768	chr4	77781571	77781730	+	0	NA	intron (NM_001365006, intron 1 of 11)	intron (NM_001365006, intron 1 of 11)	37414	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
31137	chr10	89643601	89644510	+	0	NA	promoter-TSS (NM_138316)	promoter-TSS (NM_138316)	-139	NM_138316	53354		NM_138316	ENSG00000152782	PANK1	PANK	pantothenate kinase 1	protein-coding
61208	chr13	49495051	49497600	+	0	NA	promoter-TSS (NM_001040444)	promoter-TSS (NM_001040444)	-72	NR_135323	51131		NM_001040443	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
137748	chr2	197889021	197889300	+	0	NA	intron (NM_006226, intron 1 of 5)	MIR3|SINE|MIR	84567	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
217359	chr8	27839021	27839280	+	0	NA	Intergenic	MER41B|LTR|ERV1	-1333	NM_001363040	55872		NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
227039	chr9	83965071	83965400	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	4622	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
167133	chr3	127696021	127696680	+	0	NA	intron (NM_001256585, intron 5 of 6)	intron (NM_001256585, intron 5 of 6)	23398	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
141455	chr2	241051371	241051780	+	0	NA	intron (NM_001080437, intron 12 of 31)	intron (NM_001080437, intron 12 of 31)	50712	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
110934	chr19	2818851	2818950	+	0	NA	promoter-TSS (NM_001102651)	promoter-TSS (NM_001102651)	-968	NM_001102651	115196		NM_152303	ENSG00000172006	ZNF554	-	zinc finger protein 554	protein-coding
136158	chr2	174340871	174341030	+	0	NA	Intergenic	CpG	5996	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
144176	chr20	34105801	34106230	+	0	NA	intron (NM_003908, intron 1 of 8)	AluJo|SINE|Alu	6228	NM_001316363	8894		NM_003908	ENSG00000125977	EIF2S2	EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta	eukaryotic translation initiation factor 2 subunit beta	protein-coding
128883	chr2	64113021	64113280	+	0	NA	intron (NM_020651, intron 1 of 6)	AluJr|SINE|Alu	31270	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
148658	chr21	6115571	6115950	+	0	NA	intron (NM_173354, intron 3 of 13).2	AluSx1|SINE|Alu	4629	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
194948	chr6	35264871	35265030	+	0	NA	intron (NM_003427, intron 1 of 13)	intron (NM_003427, intron 1 of 13)	5215	NM_001292032	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
12590	chr1	109025271	109025830	+	0	NA	intron (NM_001142550, intron 1 of 14)	AluSg|SINE|Alu	16552	NM_001142551	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
125808	chr2	24052851	24053150	+	0	NA	intron (NM_054033, intron 1 of 3)	L2a|LINE|L2	3259	NR_136536	2281		NM_004116	ENSG00000119782	FKBP1B	FKBP12.6|FKBP1L|OTK4|PKBP1L|PPIase	FKBP prolyl isomerase 1B	protein-coding
19484	chr1	175015751	175016050	+	0	NA	intron (NR_037606, intron 2 of 2)	intron (NR_037606, intron 2 of 2)	7525	NM_022100	63931		NM_022100	ENSG00000120333	MRPS14	COXPD38|DJ262D12.2|HSMRPS14|MRP-S14|S14mt|uS14m	mitochondrial ribosomal protein S14	protein-coding
2014	chr1	6889901	6890230	+	0	NA	intron (NM_001349608, intron 2 of 21)	intron (NM_001349608, intron 2 of 21)	104611	NM_001349609	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
172951	chr4	3528401	3529000	+	0	NA	intron (NM_002337, intron 1 of 7)	intron (NM_002337, intron 1 of 7)	3449	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
3432	chr1	15859221	15859500	+	0	NA	intron (NM_015001, intron 1 of 14)	AluYm1|SINE|Alu	-11213	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
53272	chr12	63821871	63822030	+	0	NA	non-coding (NR_126167, exon 1 of 4)	non-coding (NR_126167, exon 1 of 4)	206	NR_126167	104169670		NR_126167	ENSG00000255850	RXYLT1-AS1	TMEM5-AS1	RXYLT1 antisense RNA 1	ncRNA
145212	chr20	38905221	38905750	+	0	NA	intron (NM_001172735, intron 6 of 9)	MLT1F1|LTR|ERVL-MaLR	-20932	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
14880	chr1	146535821	146536880	+	0	NA	intron (NR_103556, intron 9 of 55)	intron (NR_103556, intron 9 of 55)	50018	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
148908	chr21	8815301	8815950	+	0	NA	Intergenic	TAR1|Satellite|telo	-171374	NR_037421	100500862		NR_037421	ENSG00000275708	MIR3648-1	MIR3648|hsa-mir-3648-1	microRNA 3648-1	ncRNA
120631	chr19	45064051	45064150	+	0	NA	exon (NM_007056, exon 12 of 21)	exon (NM_007056, exon 12 of 21)	-11527	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
87668	chr16	74599001	74599200	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	8014	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
12565	chr1	108702971	108704700	+	0	NA	TTS (NM_001349768)	TTS (NM_001349768)	-9073	NM_001144937	163479		NM_173532	ENSG00000143107	FNDC7	-	fibronectin type III domain containing 7	protein-coding
121813	chr19	47927401	47927700	+	0	NA	Intergenic	AluSp|SINE|Alu	-1268	NR_024220	100170225		NR_024220		SNAR-C1	-	small NF90 (ILF3) associated RNA C1	snRNA
203006	chr6	163412101	163412530	+	0	NA	TTS (NR_037593)	TTS (NR_037593)	1635	NR_037593	100526820		NR_037593	ENSG00000270419	CAHM	LINC00468	colon adenocarcinoma hypermethylated	ncRNA
145983	chr20	46360151	46360450	+	0	NA	intron (NM_173179, intron 1 of 9)	MER20B|DNA|hAT-Charlie	4125	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
127932	chr2	46492601	46492800	+	0	NA	Intergenic	Intergenic	13135	NM_001145051	388946		NM_001145051	ENSG00000284701	TMEM247	-	transmembrane protein 247	protein-coding
52297	chr12	54658621	54658900	+	0	NA	Intergenic	Intergenic	-10395	NM_001300854	117159		NM_053283	ENSG00000161634	DCD	AIDD|DCD-1|DSEP|HCAP|PIF	dermcidin	protein-coding
190306	chr5	179601601	179602880	+	0	NA	non-coding (NR_110560, exon 3 of 9).2	non-coding (NR_110560, exon 3 of 9).2	1501	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
79970	chr16	1781921	1783850	+	0	NA	promoter-TSS (NR_104318)	promoter-TSS (NR_104318)	-75	NM_001284501	10101		NM_012225	ENSG00000095906	NUBP2	CFD1|CIAO6|NBP 2|NUBP1	NUBP iron-sulfur cluster assembly factor 2, cytosolic	protein-coding
183920	chr5	87396271	87396650	+	0	NA	intron (NM_001239, intron 7 of 8)	AluSc8|SINE|Alu	16444	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
231862	chr9	132888951	132889250	+	0	NA	non-coding (NR_133631, exon 3 of 3)	non-coding (NR_133631, exon 3 of 3)	-10054	NM_001371771	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
46154	chr11	123058471	123059900	+	0	NA	promoter-TSS (NR_001454)	promoter-TSS (NR_001454)	-190	NR_001454	85390		NR_001454	ENSG00000207118	SNORD14D	-	small nucleolar RNA, C/D box 14D	snoRNA
87377	chr16	70437371	70437530	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	1650	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
41440	chr11	66078671	66079750	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	8938	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
58699	chr12	132558951	132559280	+	0	NA	intron (NM_001382740, intron 5 of 11)	CpG	-22882	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
207445	chr7	44568921	44569180	+	0	NA	intron (NM_019082, intron 10 of 13)	intron (NM_019082, intron 10 of 13)	5488	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
106375	chr18	13288621	13289100	+	0	NA	intron (NM_001378099, intron 2 of 6)	Mam_R4|LINE|Dong-R4	11498	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
86631	chr16	67434951	67436430	+	0	NA	exon (NM_000196, exon 2 of 5)	exon (NM_000196, exon 2 of 5)	4569	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
170735	chr3	188186971	188187400	+	0	NA	intron (NM_001375462, intron 1 of 11)	HAL1ME|LINE|L1	8642	NR_024413	401105		NM_207488	ENSG00000279891	FLJ42393	AVPC1948	uncharacterized LOC401105	ncRNA
13304	chr1	113389721	113390790	+	0	NA	promoter-TSS (NM_001142782)	promoter-TSS (NM_001142782)	-260	NM_001142782	260425		NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
222137	chr8	132395971	132396150	+	0	NA	intron (NM_004519, intron 1 of 14)	MIRb|SINE|MIR	51202	NM_001204824	3786		NM_004519	ENSG00000184156	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel subfamily Q member 3	protein-coding
106840	chr18	24025801	24026000	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-10440	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
228515	chr9	100355371	100355880	+	0	NA	Intergenic	Intergenic	-2683	NM_017746	54881		NM_017746	ENSG00000136891	TEX10	Ipi1|bA208F1.2	testis expressed 10	protein-coding
233315	chr9	137422601	137423930	+	0	NA	promoter-TSS (NM_001256067)	promoter-TSS (NM_001256067)	-103	NR_104599	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
118421	chr19	35777951	35778050	+	0	NA	intron (NM_052948, intron 3 of 20)	intron (NM_052948, intron 3 of 20)	2436	NM_001366178	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
78351	chr15	91289451	91289550	+	0	NA	intron (NM_001167580, intron 10 of 11)	intron (NM_001167580, intron 10 of 11)	-173839	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
47505	chr12	4069271	4069430	+	0	NA	Intergenic	L1MC1|LINE|L1	-195902	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
5967	chr1	26920051	26920150	+	0	NA	Intergenic	L2|LINE|L2	-1643	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
122705	chr19	49932501	49933430	+	0	NA	promoter-TSS (NR_039906)	promoter-TSS (NR_039906)	-99	NR_039906	100616483		NR_039906	ENSG00000283842	MIR4751	-	microRNA 4751	ncRNA
139645	chr2	226738971	226739130	+	0	NA	intron (NM_005544, intron 1 of 1)	intron (NM_005544, intron 1 of 1)	60770	NM_005544	3667		NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
66091	chr14	59480271	59480580	+	0	NA	intron (NM_144581, intron 1 of 4)	intron (NM_144581, intron 1 of 4)	3150	NM_001331159	112849		NM_144581	ENSG00000126790	L3HYPDH	C14orf149	trans-L-3-hydroxyproline dehydratase	protein-coding
221585	chr8	125422251	125422950	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-7758	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
172865	chr4	3300971	3301280	+	0	NA	Intergenic	Intergenic	-13022	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
60393	chr13	40954221	40954830	+	0	NA	intron (NM_001370329, intron 4 of 9)	SVA_D|Retroposon|SVA	27757	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
201474	chr6	148762501	148763080	+	0	NA	intron (NM_005715, intron 1 of 7)	L1PB4|LINE|L1	15760	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
164835	chr3	71019571	71019730	+	0	NA	intron (NM_001244810, intron 11 of 20)	AluSx1|SINE|Alu	45274	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
138473	chr2	206781371	206781830	+	0	NA	intron (NM_014929, intron 7 of 11)	AluSq|SINE|Alu	-1634	NR_036078	100423002		NR_036078	ENSG00000263468	MIR3130-2	MIR3130-4|mir-3130-2	microRNA 3130-2	ncRNA
32620	chr10	103663701	103664030	+	0	NA	intron (NM_001365079, intron 1 of 8)	intron (NM_001365079, intron 1 of 8)	14350	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
211039	chr7	102425321	102427630	+	0	NA	non-coding (NR_038967, exon 9 of 9)	non-coding (NR_038967, exon 9 of 9)	-7055	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
69994	chr14	100048821	100049280	+	0	NA	intron (NM_001330221, intron 1 of 13)	intron (NM_001330221, intron 1 of 13)	-16372	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
230864	chr9	129164671	129165030	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	13411	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
43698	chr11	85950571	85951130	+	0	NA	Intergenic	Intergenic	95467	NM_001286159	220047		NM_173556	ENSG00000150676	CCDC83	CT148|HSD9|KP-CoT-23	coiled-coil domain containing 83	protein-coding
123011	chr19	51096521	51096880	+	0	NA	TTS (NM_145232)	TTS (NM_145232)	11709	NM_145232	90353		NM_145232	ENSG00000142544	CTU1	ATPBD3|NCS6	cytosolic thiouridylase subunit 1	protein-coding
17748	chr1	159007571	159007980	+	0	NA	intron (NM_001364867, intron 1 of 12)	MLT1A|LTR|ERVL-MaLR	-1216	NM_001376589	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
163100	chr3	50109521	50109830	+	0	NA	exon (NM_005778, exon 15 of 25)	exon (NM_005778, exon 15 of 25)	-8687	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
32737	chr10	104306821	104307150	+	0	NA	Intergenic	Intergenic	-16379	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
192857	chr6	27195021	27195150	+	0	NA	Intergenic	LTR13A|LTR|ERVK	47459	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
129721	chr2	70898071	70898230	+	0	NA	Intergenic	Intergenic	-2426	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
42362	chr11	68632801	68633100	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-51594	NM_015973	51083		NM_015973	ENSG00000069482	GAL	ETL8|GAL-GMAP|GALN|GLNN|GMAP	galanin and GMAP prepropeptide	protein-coding
177728	chr4	122309951	122310250	+	0	NA	intron (NM_001384125, intron 59 of 87)	intron (NM_001384125, intron 59 of 87)	-68911	NM_139243	132612		NM_139243	ENSG00000164113	ADAD1	Tenr	adenosine deaminase domain containing 1	protein-coding
221359	chr8	123310251	123310850	+	0	NA	Intergenic	Intergenic	-35009	NR_037873	11244		NM_007222	ENSG00000165156	ZHX1	-	zinc fingers and homeoboxes 1	protein-coding
165376	chr3	93977851	93978350	+	0	NA	Intergenic	MER39|LTR|ERV1	-2039	NM_001174151	200894		NM_144996	ENSG00000169379	ARL13B	ARL2L1|JBTS8	ADP ribosylation factor like GTPase 13B	protein-coding
232734	chr9	136629401	136629850	+	0	NA	Intergenic	Intergenic	-12444	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
117813	chr19	29949071	29949430	+	0	NA	intron (NR_045557, intron 1 of 9)	SVA_C|Retroposon|SVA	7011	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
157893	chr22	49753651	49753750	+	0	NA	Intergenic	Intergenic	70631	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
200472	chr6	135162621	135163750	+	0	NA	Intergenic	AluJb|SINE|Alu	-18123	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
146887	chr20	51514251	51515330	+	0	NA	intron (NM_173091, intron 3 of 9)	AluSz|SINE|Alu	27929	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
82394	chr16	16149821	16150080	+	0	NA	non-coding (NR_147784, exon 29 of 29)	non-coding (NR_147784, exon 29 of 29)	73521	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
104364	chr17	81001021	81001280	+	0	NA	Intergenic	Intergenic	9309	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
15835	chr1	151344501	151345000	+	0	NA	exon (NM_001379417, exon 6 of 11)	exon (NM_001379417, exon 6 of 11)	2106	NM_001379416	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
195459	chr6	37017701	37019330	+	0	NA	intron (NM_173558, intron 9 of 15)	intron (NM_173558, intron 9 of 15)	12860	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
205538	chr7	19708321	19709980	+	0	NA	promoter-TSS (NM_001002926)	promoter-TSS (NM_001002926)	-113	NM_001002926	221830		NM_001002926	ENSG00000105849	POLR1F	A43|RPA43|TWISTNB	RNA polymerase I subunit F	protein-coding
107205	chr18	36069251	36069550	+	0	NA	Intergenic	AluJb|SINE|Alu	-1806	NM_001303413	55197		NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
57274	chr12	121629671	121630800	+	0	NA	intron (NM_032790, intron 2 of 2)	AluSq|SINE|Alu	3685	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
17302	chr1	156446971	156447350	+	0	NA	Intergenic	AluSp|SINE|Alu	-17612	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
154195	chr22	31348821	31349300	+	0	NA	non-coding (NR_120386, exon 1 of 1)	non-coding (NR_120386, exon 1 of 1)	2301	NR_120386	54944		NM_017834		LINC01521	-	long intergenic non-protein coding RNA 1521	ncRNA
114115	chr19	11137501	11139250	+	0	NA	Intergenic	Intergenic	17407	NM_001317033								
74646	chr15	60855051	60855350	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	173631	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
75679	chr15	67826451	67826900	+	0	NA	exon (NM_001365915, exon 2 of 9)	exon (NM_001365915, exon 2 of 9)	1166	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
71671	chr15	19423171	19423530	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-859394	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
111932	chr19	4750121	4750380	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-18855	NR_027148	284424		NM_174947	ENSG00000176840	MIR7-3HG	C19orf30|Huh7|LINC00306|NCRNA00306|PGSF1|uc002mbe.2	MIR7-3 host gene	ncRNA
17971	chr1	160452471	160452630	+	0	NA	Intergenic	AluSx|SINE|Alu	51986	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
39254	chr11	57716071	57716830	+	0	NA	intron (NR_144933, intron 1 of 6)	SVA_D|Retroposon|SVA	3857	NM_015959	51075		NM_015959	ENSG00000213593	TMX2	CGI-31|NEDMCMS|PDIA12|PIG26|TXNDC14	thioredoxin related transmembrane protein 2	protein-coding
187191	chr5	140658851	140659150	+	0	NA	exon (NM_006083, exon 12 of 20)	exon (NM_006083, exon 12 of 20)	-5799	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
8813	chr1	42946371	42947200	+	0	NA	intron (NM_006516, intron 1 of 9)	intron (NM_006516, intron 1 of 9)	12083	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
217585	chr8	29526151	29526730	+	0	NA	Intergenic	Intergenic	-175756	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
124382	chr19	58386241	58388400	+	0	NA	promoter-TSS (NR_039910)	promoter-TSS (NR_039910)	51	NM_001009	6193		NM_001009	ENSG00000083845	RPS5	S5|uS7	ribosomal protein S5	protein-coding
200565	chr6	136278821	136279580	+	0	NA	intron (NM_001363659, intron 3 of 11)	intron (NM_001363659, intron 3 of 11)	10646	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
119923	chr19	41768871	41769030	+	0	NA	intron (NM_002483, intron 5 of 5)	AluSp|SINE|Alu	13420	NM_002483	4680		NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA|NCA-50/90	CEA cell adhesion molecule 6	protein-coding
118233	chr19	35208421	35208730	+	0	NA	Intergenic	AluY|SINE|Alu	20150	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
39432	chr11	60910301	60910800	+	0	NA	Intergenic	L2a|LINE|L2	-3608	NM_024092	79073		NM_024092	ENSG00000110108	TMEM109	SND3|hSND3	transmembrane protein 109	protein-coding
58856	chr12	132987801	132988080	+	0	NA	intron (NM_001330514, intron 2 of 4)	L1MCa|LINE|L1	1573	NM_001330513	7574		NM_019591	ENSG00000198393	ZNF26	HEL-179|KOX20	zinc finger protein 26	protein-coding
83500	chr16	27430151	27430450	+	0	NA	intron (NM_181078, intron 2 of 8)	intron (NM_181078, intron 2 of 8)	3029	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
179625	chr4	186115771	186115950	+	0	NA	intron (NM_001367768, intron 1 of 13)	L1PA2|LINE|L1	11156	NM_001367768	25854		NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
139971	chr2	230879471	230880030	+	0	NA	TTS (NM_001012516)	TTS (NM_001012516)	-6796	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
232633	chr9	136455301	136455850	+	0	NA	intron (NM_014866, intron 20 of 31)	intron (NM_014866, intron 20 of 31)	-15730	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
55876	chr12	109546171	109546330	+	0	NA	Intergenic	Intergenic	27254	NR_038118	326625		NM_052845	ENSG00000139428	MMAB	ATR|CFAP23|cblB|cob	metabolism of cobalamin associated B	protein-coding
202680	chr6	158794241	158794730	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-23494	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
54849	chr12	95334201	95334680	+	0	NA	Intergenic	AluSq|SINE|Alu	24517	NR_037456	100500802		NR_037456	ENSG00000265917	MIR3685	-	microRNA 3685	ncRNA
25125	chr10	4038151	4038250	+	0	NA	Intergenic	Intergenic	-13526	NR_120632								
67250	chr14	68981201	68981930	+	0	NA	intron (NR_073422, intron 2 of 3)	L2c|LINE|L2	1883	NR_073422	161159		NR_073422	ENSG00000259062	ACTN1-DT	ACTN1-AS1|C14orf84	ACTN1 divergent transcript	ncRNA
102186	chr17	75152971	75153470	+	0	NA	promoter-TSS (NM_001288610)	promoter-TSS (NM_001288610)	73	NM_001288610	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
134263	chr2	135657621	135658750	+	0	NA	intron (NM_001378107, intron 18 of 26)	AluSx3|SINE|Alu	-7212	NR_029672	406915		NR_029672	ENSG00000207654	MIR128-1	MIR128A|MIRN128-1|MIRN128A|mir-128-1	microRNA 128-1	ncRNA
19819	chr1	182784371	182784880	+	0	NA	Intergenic	Intergenic	-4824	NM_001200052	80896		NM_030769	ENSG00000135838	NPL	C112|C1orf13|NAL|NPL1	N-acetylneuraminate pyruvate lyase	protein-coding
233426	chr9	137603471	137603700	+	0	NA	Intergenic	Intergenic	-2055	NM_001317968	92714		NM_152285	ENSG00000197070	ARRDC1	-	arrestin domain containing 1	protein-coding
222028	chr8	130182301	130182700	+	0	NA	intron (NM_001362924, intron 7 of 30)	intron (NM_001362924, intron 7 of 30)	-97732	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
214781	chr7	151116221	151116730	+	0	NA	intron (NM_001308305, intron 1 of 8)	intron (NM_001308305, intron 1 of 8)	1837	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
58391	chr12	131893921	131895200	+	0	NA	promoter-TSS (NM_003565)	promoter-TSS (NM_003565)	-62	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
199575	chr6	118905701	118906200	+	0	NA	intron (NM_014034, intron 3 of 3)	intron (NM_014034, intron 3 of 3)	11798	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
162441	chr3	48444171	48444750	+	0	NA	TTS (NM_001329417)	TTS (NM_001329417)	-2250	NM_001271022	84126		NM_032166	ENSG00000164053	ATRIP	-	ATR interacting protein	protein-coding
159187	chr3	12838671	12838850	+	0	NA	intron (NM_001007073, intron 3 of 3)	MER4E|LTR|ERV1	1690	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
236395	chrX	71111391	71112850	+	0	NA	promoter-TSS (NM_000206)	promoter-TSS (NM_000206)	-543	NM_000206	3561		NM_000206	ENSG00000147168	IL2RG	CD132|CIDX|IL-2RG|IMD4|P64|SCIDX|SCIDX1	interleukin 2 receptor subunit gamma	protein-coding
86339	chr16	66476271	66476780	+	0	NA	promoter-TSS (NR_109960)	promoter-TSS (NR_109960)	-123	NR_109960	101927726		NR_109960	ENSG00000261656	BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
28532	chr10	50501951	50502250	+	0	NA	intron (NM_147156, intron 3 of 10)	intron (NM_147156, intron 3 of 10)	121856	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
167512	chr3	129250971	129251130	+	0	NA	intron (NM_016128, intron 2 of 23)	AluYm1|SINE|Alu	1444	NM_016128	22820		NM_016128	ENSG00000181789	COPG1	COPG	COPI coat complex subunit gamma 1	protein-coding
90113	chr16	90107301	90107500	+	0	NA	intron (NR_126161, intron 2 of 3)	intron (NR_126161, intron 2 of 3)	5136	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
78659	chr15	94323221	94323550	+	0	NA	intron (NM_001385002, intron 5 of 23)	intron (NM_001385002, intron 5 of 23)	-32545	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
132567	chr2	106486151	106487780	+	0	NA	promoter-TSS (NM_001368307)	promoter-TSS (NM_001368307)	-399	NM_001368307	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
202569	chr6	158680001	158680200	+	0	NA	intron (NM_001318745, intron 2 of 14)	intron (NM_001318745, intron 2 of 14)	16697	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
71520	chr14	106141271	106142150	+	0	NA	Intergenic	Intergenic	-145964	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
128259	chr2	54572151	54572600	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	13981	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
62053	chr13	91353001	91353430	+	0	NA	non-coding (NR_027350, exon 2 of 2)	non-coding (NR_027350, exon 2 of 2)	1901	NR_029508	407048		NR_029508	ENSG00000283705	MIR92A1	C13orf25|MIR17HG|MIR92-1|MIRH1|MIRHG1|MIRN92-1|MIRN92A-1|MIRN92A1|miRNA92-1|mir-92a-1	microRNA 92a-1	ncRNA
208493	chr7	67304751	67305300	+	0	NA	intron (NR_040586, intron 1 of 4)	AluJb|SINE|Alu	2387	NR_040586	64940		NM_022906	ENSG00000291153	STAG3L4	STAG3L4P	STAG3 cohesin complex component like 4 (pseudogene)	pseudo
139308	chr2	219530001	219530980	+	0	NA	intron (NM_182847, intron 1 of 8)	L2a|LINE|L2	12607	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
193131	chr6	29015471	29016320	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-10283	NM_001010877	282890		NM_001010877	ENSG00000197935	ZNF311	zf31	zinc finger protein 311	protein-coding
72257	chr15	30572971	30573550	+	0	NA	intron (NR_027470, intron 2 of 4).2	CpG-8032	705	NR_026858	89838		NR_026858	ENSG00000291023	ULK4P1	D-X|FAM7A1	ULK4 pseudogene 1	pseudo
131494	chr2	96528201	96528950	+	0	NA	intron (NR_135564, intron 2 of 2)	MIR|SINE|MIR	3731	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
81048	chr16	4314511	4315070	+	0	NA	promoter-TSS (NM_001318918).2	promoter-TSS (NM_001318918).2	29	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
221053	chr8	116788171	116788660	+	0	NA	Intergenic	AluJr4|SINE|Alu	21891	NM_032334	84294		NM_032334	ENSG00000147679	UTP23	C8orf53	UTP23 small subunit processome component	protein-coding
237086	chrX	103845151	103845330	+	0	NA	Intergenic	Intergenic	-12958	NR_146558	51209		NM_016370	ENSG00000123570	RAB9B	RAB9L|Rab-9L	RAB9B, member RAS oncogene family	protein-coding
146506	chr20	49906521	49906780	+	0	NA	exon (NM_006038, exon 3 of 3)	exon (NM_006038, exon 3 of 3)	7089	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
199462	chr6	117677551	117678380	+	0	NA	intron (NM_138459, intron 1 of 4)	intron (NM_138459, intron 1 of 4)	2496	NM_138459	116150		NM_138459	ENSG00000153989	NUS1	C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding
225176	chr9	33883971	33884380	+	0	NA	intron (NM_017811, intron 1 of 4)	intron (NM_017811, intron 1 of 4)	50189	NM_001282530	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
161159	chr3	39095751	39096250	+	0	NA	TTS (NM_001278790)	TTS (NM_001278790)	11627	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
80746	chr16	3147051	3147750	+	0	NA	non-coding (NR_132322, exon 6 of 10)	non-coding (NR_132322, exon 6 of 10)	3109	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
24490	chr1	244341671	244341830	+	0	NA	Intergenic	Intergenic	-10885	NM_001276348	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
125670	chr2	20165151	20165250	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	59930	NM_002997	6382		NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
16606	chr1	155067551	155068030	+	0	NA	intron (NM_182689, intron 3 of 3)	AluY|SINE|Alu	-3799	NR_040773	100505666		NR_040772		DCST1-AS1	-	DCST1 antisense RNA 1	ncRNA
175592	chr4	75671701	75671900	+	0	NA	intron (NM_203505, intron 1 of 11)	intron (NM_203505, intron 1 of 11)	1359	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
238500	chrX	153636221	153636550	+	0	NA	Intergenic	Intergenic	-6056	NM_001395	1852		NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
223300	chr8	143794501	143795030	+	0	NA	intron (NM_182706, intron 27 of 36).2	intron (NM_182706, intron 27 of 36).2	18277	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
200104	chr6	130195651	130195950	+	0	NA	intron (NM_001258275, intron 7 of 13)	HERVH-int|LTR|ERV1	20085	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
98536	chr17	47655901	47656100	+	0	NA	intron (NM_002265, intron 3 of 21)	AluSq10|SINE|Alu	4935	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
37990	chr11	35042221	35042680	+	0	NA	Intergenic	Intergenic	95582	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
211333	chr7	104878651	104879030	+	0	NA	intron (NM_199000, intron 2 of 2)	Tigger1|DNA|TcMar-Tigger	47805	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
194355	chr6	32947721	32948080	+	0	NA	TTS (NM_006120)	TTS (NM_006120)	5197	NM_006120	3108		NM_006120	ENSG00000204257	HLA-DMA	D6S222E|DMA|HLADM|RING6	major histocompatibility complex, class II, DM alpha	protein-coding
173206	chr4	6843701	6844050	+	0	NA	intron (NM_014743, intron 4 of 9)	intron (NM_014743, intron 4 of 9)	61143	NM_001100590	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
186408	chr5	135457471	135457700	+	0	NA	Intergenic	Intergenic	-5234	NM_001099221	497189		NM_001099221	ENSG00000255833	TIFAB	-	TIFA inhibitor	protein-coding
29894	chr10	73098571	73099230	+	0	NA	Intergenic	Intergenic	-1926	NM_001017962	5033		NM_000917	ENSG00000122884	P4HA1	P4HA	prolyl 4-hydroxylase subunit alpha 1	protein-coding
219322	chr8	70154171	70154330	+	0	NA	intron (NM_001321713, intron 10 of 21)	intron (NM_001321713, intron 10 of 21)	-82998	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
24465	chr1	243979551	243979730	+	0	NA	intron (NR_033883, intron 2 of 11)	CpG	62238	NR_033883	339529		NR_033883	ENSG00000226828	LINC02774	-	long intergenic non-protein coding RNA 2774	ncRNA
224983	chr9	33101351	33101650	+	0	NA	Intergenic	Intergenic	-7192	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
79734	chr16	1331691	1332490	+	0	NA	Intergenic	Intergenic	-1555	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
6222	chr1	27497521	27498680	+	0	NA	Intergenic	AluSg|SINE|Alu	-7933	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
37965	chr11	34685301	34685500	+	0	NA	Intergenic	Intergenic	43028	NM_001378046	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
224212	chr9	5579971	5580130	+	0	NA	Intergenic	Intergenic	-49057	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
132710	chr2	109033621	109034130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-44655	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
210617	chr7	100441271	100441430	+	0	NA	Intergenic	AluY|SINE|Alu	-4853	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
234180	chrX	11774451	11774800	+	0	NA	intron (NM_078629, intron 12 of 12)	intron (NM_078629, intron 12 of 12)	14978	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
131006	chr2	87820971	87822030	+	0	NA	intron (NM_001024457, intron 1 of 22).2	intron (NM_001024457, intron 1 of 22).2	4267	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
73792	chr15	47987971	47988130	+	0	NA	Intergenic	Intergenic	-132940	NM_205850	283652		NM_205850	ENSG00000188467	SLC24A5	JSX|NCKX5|OCA6|SHEP4	solute carrier family 24 member 5	protein-coding
134686	chr2	144481001	144481300	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-38464	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
126873	chr2	32050301	32050700	+	0	NA	Intergenic	AluSx3|SINE|Alu	-10665	NR_135587	84661		NM_032574	ENSG00000162961	DPY30	Cps25|HDPY-30|Saf19	dpy-30 histone methyltransferase complex regulatory subunit	protein-coding
41942	chr11	67307501	67307880	+	0	NA	exon (NM_017857, exon 7 of 14)	exon (NM_017857, exon 7 of 14)	4160	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
158435	chr22	50584271	50584630	+	0	NA	TTS (NR_021492)	TTS (NR_021492)	1424	NR_110536	100144603		NR_021492	ENSG00000205559	CHKB-DT	CHKB-AS1|HRAT	CHKB divergent transcript	ncRNA
151638	chr22	16566371	16566530	+	0	NA	Intergenic	(CAAGCCAGC)n|Simple_repeat|Simple_repeat	26360	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
111164	chr19	3338351	3339280	+	0	NA	Intergenic	Intergenic	-20815	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
22352	chr1	214617251	214617550	+	0	NA	intron (NM_016343, intron 3 of 19)	intron (NM_016343, intron 3 of 19)	14205	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
23832	chr1	234601401	234602100	+	0	NA	Intergenic	Intergenic	7775	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
648	chr1	1348601	1350080	+	0	NA	promoter-TSS (NM_001330311)	promoter-TSS (NM_001330311)	78	NM_004421	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
79472	chr16	742321	742900	+	0	NA	Intergenic	Intergenic	-1613	NM_001304799	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
125124	chr2	9813571	9814880	+	0	NA	Intergenic	Intergenic	-29217	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
1334	chr1	2466801	2467500	+	0	NA	promoter-TSS (NM_001303012)	promoter-TSS (NM_001303012)	-301	NM_001303012	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
182893	chr5	70054701	70054900	+	0	NA	intron (NM_022874, intron 1 of 7)	intron (NM_022874, intron 1 of 7)	5131	NM_000344	6606		NM_000344	ENSG00000172062	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
44306	chr11	102352051	102352700	+	0	NA	intron (NM_001256166, intron 3 of 8)	AluY|SINE|Alu	5001	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
196125	chr6	42395101	42395880	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	56561	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
192678	chr6	26240001	26241730	+	0	NA	TTS (NM_003540)	TTS (NM_003540)	472	NM_003540	8361		NM_003540	ENSG00000274618	H4C6	H4|H4-16|H4/c|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C8|H4C9|H4FC|HIST1H4F	H4 clustered histone 6	protein-coding
123884	chr19	55303471	55303780	+	0	NA	intron (NM_032430, intron 11 of 18)	intron (NM_032430, intron 11 of 18)	19628	NM_032430	84446		NM_032430	ENSG00000160469	BRSK1	SAD-B|hSAD1	BR serine/threonine kinase 1	protein-coding
14705	chr1	145929371	145929550	+	0	NA	intron (NR_147182, intron 2 of 2)	AluSx4|SINE|Alu	-1976	NM_005105	9939		NM_005105	ENSG00000265241	RBM8A	BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1	RNA binding motif protein 8A	protein-coding
87867	chr16	77235921	77236580	+	0	NA	Intergenic	Intergenic	36842	NM_001129979	100130958		NM_001129979	ENSG00000205078	SYCE1L	MRP2	synaptonemal complex central element protein 1 like	protein-coding
137510	chr2	197179771	197179930	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-18141	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
51666	chr12	53059371	53060350	+	0	NA	exon (NM_015319, exon 18 of 29)	exon (NM_015319, exon 18 of 29)	2916	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
31631	chr10	97387551	97387650	+	0	NA	intron (NM_015179, intron 8 of 33)	intron (NM_015179, intron 8 of 33)	13740	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
189383	chr5	172717871	172718300	+	0	NA	Intergenic	Intergenic	-37418	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
35639	chr11	1839871	1840900	+	0	NA	intron (NM_001145841, intron 1 of 5)	intron (NM_001145841, intron 1 of 5)	178	NM_001145841	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
216290	chr8	12569871	12570030	+	0	NA	intron (NR_047662, intron 8 of 8)	AluJr|SINE|Alu	95661	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
62786	chr13	108898021	108898280	+	0	NA	intron (NM_015011, intron 15 of 34)	intron (NM_015011, intron 15 of 34)	268539	NM_001198950	23026		NM_015011	ENSG00000041515	MYO16	MYAP3|MYR8|Myo16b|NYAP3|PPP1R107	myosin XVI	protein-coding
73981	chr15	52003201	52003400	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	15795	NR_156732	112543478		NR_156732	ENSG00000259438	MAPK6-DT	lncMAPK6	MAPK6 divergent transcript	ncRNA
206414	chr7	32495001	32496430	+	0	NA	promoter-TSS (NM_001139499)	promoter-TSS (NM_001139499)	226	NM_015060	23080		NM_015060	ENSG00000105778	AVL9	KIAA0241	AVL9 cell migration associated	protein-coding
162712	chr3	49003801	49004330	+	0	NA	intron (NM_177939, intron 4 of 8)	intron (NM_177939, intron 4 of 8)	-3326	NM_018031	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
108385	chr18	69723351	69723650	+	0	NA	intron (NM_152721, intron 5 of 7)	intron (NM_152721, intron 5 of 7)	224373	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
133474	chr2	119843801	119844650	+	0	NA	intron (NM_002830, intron 2 of 26)	SVA_F|Retroposon|SVA	84303	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
142190	chr20	2910551	2910730	+	0	NA	intron (NM_001385311, intron 1 of 20)	AluY|SINE|Alu	37159	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
59585	chr13	27477371	27477730	+	0	NA	Intergenic	Intergenic	-26948	NM_001166263	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
67770	chr14	73736651	73736950	+	0	NA	intron (NM_001043318, intron 3 of 11)	intron (NM_001043318, intron 3 of 11)	-21947	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
93836	chr17	20984951	20985430	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	46624	NR_160722	339260		NR_123730	ENSG00000233098	LOC339260	-	uncharacterized LOC339260	ncRNA
92356	chr17	8187301	8188700	+	0	NA	TTS (NM_017622)	TTS (NM_017622)	1055	NR_039746	100616406		NR_039746	ENSG00000283160	MIR4521	mir-4521	microRNA 4521	ncRNA
20104	chr1	187157251	187157550	+	0	NA	intron (NR_126347, intron 1 of 3)	L1MC1|LINE|L1	64558	NR_126347	104169671		NR_126347	ENSG00000230426	LINC01036	-	long intergenic non-protein coding RNA 1036	ncRNA
144238	chr20	34473301	34473530	+	0	NA	intron (NM_031483, intron 16 of 24)	intron (NM_031483, intron 16 of 24)	7090	NR_030374	693229		NR_030374	ENSG00000207997	MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	ncRNA
101315	chr17	66548071	66548730	+	0	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-131546	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
136483	chr2	177222501	177223480	+	0	NA	non-coding (NR_138470, exon 12 of 12)	non-coding (NR_138470, exon 12 of 12)	10196	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
194967	chr6	35315401	35315800	+	0	NA	intron (NM_022047, intron 5 of 10)	L1MA4|LINE|L1	17782	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
165349	chr3	88180501	88180730	+	0	NA	Intergenic	Intergenic	30656	NM_173824	285237		NM_173824	ENSG00000179021	C3orf38	-	chromosome 3 open reading frame 38	protein-coding
86137	chr16	57688351	57688650	+	0	NA	3' UTR (NM_001308360, exon 11 of 11)	3' UTR (NM_001308360, exon 11 of 11)	-6306	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
152191	chr22	20108601	20108800	+	0	NA	intron (NM_022720, intron 12 of 13)	intron (NM_022720, intron 12 of 13)	6051	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
112111	chr19	5587271	5588130	+	0	NA	intron (NM_014649, intron 20 of 20)	CpG	-19666	NR_027064								
72777	chr15	39918871	39919030	+	0	NA	intron (NM_001271854, intron 1 of 3)	intron (NM_001271854, intron 1 of 3)	1316	NM_001271854	11245		NM_007223	ENSG00000166073	GPR176	HB-954	G protein-coupled receptor 176	protein-coding
103862	chr17	79739901	79740950	+	0	NA	intron (NM_178543, intron 5 of 5)	MIR3|SINE|MIR	9482	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
180118	chr5	1296471	1296850	+	0	NA	Intergenic	Intergenic	-1592	NM_001193376	7015		NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
204716	chr7	5545501	5545700	+	0	NA	Intergenic	Intergenic	-14999	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
137767	chr2	198326321	198326780	+	0	NA	intron (NR_110267, intron 2 of 2)	intron (NR_110267, intron 2 of 2)	48547	NR_110267	101927619		NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
12079	chr1	99685701	99685950	+	0	NA	intron (NM_017734, intron 3 of 7)	MamRTE1|LINE|RTE-BovB	27128	NR_031666	100302152		NR_031666	ENSG00000221669	MIR548N	MIRN548N|hsa-mir-548n	microRNA 548n	ncRNA
175747	chr4	77738121	77738380	+	0	NA	intron (NM_144571, intron 8 of 11)	intron (NM_144571, intron 8 of 11)	80814	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
207769	chr7	50156801	50157350	+	0	NA	intron (NM_001161834, intron 8 of 8)	intron (NM_001161834, intron 8 of 8)	61192	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
52464	chr12	55954271	55954700	+	0	NA	TTS (NM_201444)	TTS (NM_201444)	11557	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
210789	chr7	100803271	100803830	+	0	NA	exon (NM_004444, exon 17 of 17)	exon (NM_004444, exon 17 of 17)	-23319	NM_001363494	56996		NM_020246	ENSG00000146828	SLC12A9	CCC6|CIP1|WO3.3|hCCC6	solute carrier family 12 member 9	protein-coding
82024	chr16	12010851	12011150	+	0	NA	intron (NM_032167, intron 3 of 20)	intron (NM_032167, intron 3 of 20)	34266	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
143758	chr20	32381071	32381630	+	0	NA	intron (NM_015338, intron 3 of 11)	AluJb|SINE|Alu	22285	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
183627	chr5	80229071	80229230	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluSz|SINE|Alu	26898	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
39774	chr11	61916051	61916350	+	0	NA	intron (NM_001271686, intron 1 of 8)	AluSx|SINE|Alu	1366	NM_013401	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
94581	chr17	29698151	29698650	+	0	NA	intron (NM_033389, intron 3 of 14)	intron (NM_033389, intron 3 of 14)	63032	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
92198	chr17	7844701	7845750	+	0	NA	intron (NM_001348716, intron 2 of 22)	intron (NM_001348716, intron 2 of 22)	5308	NM_001080424	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
170656	chr3	187164971	187165400	+	0	NA	Intergenic	L1PA16|LINE|L1	-25689	NM_052969	116832		NM_052969	ENSG00000163923	RPL39L	L39-2|RPL39L1	ribosomal protein L39 like	protein-coding
186064	chr5	134083571	134083950	+	0	NA	Intergenic	L2c|LINE|L2	-30921	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
39615	chr11	61394921	61395180	+	0	NA	intron (NM_016499, intron 3 of 4)	AluJr|SINE|Alu	2463	NM_001173990	51259		NM_016499	ENSG00000187049	TMEM216	HSPC244	transmembrane protein 216	protein-coding
44937	chr11	116772171	116773680	+	0	NA	promoter-TSS (NM_001159736)	promoter-TSS (NM_001159736)	62	NM_032725	84811		NM_032725	ENSG00000137656	BUD13	Cwc26|fSAP71	BUD13 homolog	protein-coding
207835	chr7	50335601	50336600	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	17052	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
171553	chr3	196869551	196869950	+	0	NA	intron (NM_001308045, intron 1 of 8)	AluSp|SINE|Alu	1830	NM_152699	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
122936	chr19	50695001	50695830	+	0	NA	intron (NM_016148, intron 15 of 23)	CpG	24387	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
106430	chr18	13577421	13577880	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-33464	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
225092	chr9	33412371	33412530	+	0	NA	Intergenic	AluY|SINE|Alu	-9768	NM_001318156	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
33494	chr10	119119471	119119630	+	0	NA	intron (NR_130122, intron 4 of 7)	AluSx|SINE|Alu	15437	NM_001303111	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
156234	chr22	40384601	40384800	+	0	NA	intron (NM_001350047, intron 1 of 20)	AluY|SINE|Alu	14106	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
92891	chr17	16441271	16441730	+	0	NA	TTS (NM_207387)	TTS (NM_207387)	274	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
92405	chr17	8373971	8374280	+	0	NA	intron (NM_001304947, intron 1 of 1)	SVA_B|Retroposon|SVA	2579	NM_001304947	124751		NM_213597	ENSG00000184619	KRBA2	-	KRAB-A domain containing 2	protein-coding
74428	chr15	59196571	59196730	+	0	NA	intron (NM_004998, intron 16 of 27)	intron (NM_004998, intron 16 of 27)	-10193	NM_033195	92483		NM_033195	ENSG00000171989	LDHAL6B	LDH6B|LDHAL6|LDHL	lactate dehydrogenase A like 6B	protein-coding
13122	chr1	111638401	111638900	+	0	NA	intron (NM_001010935, intron 2 of 8)	AluJb|SINE|Alu	-18252	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
76745	chr15	76339621	76340590	+	0	NA	intron (NM_145805, intron 3 of 5)	CpG-8458	3332	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
111505	chr19	3983901	3984400	+	0	NA	exon (NM_001961, exon 2 of 15)	exon (NM_001961, exon 2 of 15)	1313	NM_001961	1938		NM_001961	ENSG00000167658	EEF2	EEF-2|EF-2|EF2|SCA26	eukaryotic translation elongation factor 2	protein-coding
68642	chr14	89939451	89939850	+	0	NA	intron (NM_145231, intron 3 of 5)	intron (NM_145231, intron 3 of 5)	14886	NM_001284268	90141		NM_145231	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
40814	chr11	64921151	64921650	+	0	NA	Intergenic	Intergenic	-3289	NM_006244	5526		NM_006244	ENSG00000068971	PPP2R5B	B56B|B56beta|PR61B	protein phosphatase 2 regulatory subunit B'beta	protein-coding
170906	chr3	194070471	194071230	+	0	NA	non-coding (NR_136179, exon 1 of 3)	non-coding (NR_136179, exon 1 of 3)	120	NR_136179	285389		NR_136179	ENSG00000230102	LINC02028	-	long intergenic non-protein coding RNA 2028	ncRNA
133102	chr2	112632871	112633130	+	0	NA	Intergenic	AluJb|SINE|Alu	11180	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
200	chr1	696101	696300	+	0	NA	Intergenic	L1M7|LINE|L1	-9546	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
153456	chr22	25333571	25333730	+	0	NA	Intergenic	Intergenic	15393	NR_029395	91353		NM_001013618		IGLL3P	16.1|IGLL3	immunoglobulin lambda like polypeptide 3, pseudogene	pseudo
34218	chr10	129959771	129960330	+	0	NA	intron (NM_001375379, intron 4 of 15)	CpG-3520	4224	NM_001005463	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
212785	chr7	130072101	130073030	+	0	NA	intron (NM_014997, intron 1 of 9)	intron (NM_014997, intron 1 of 9)	2031	NM_014997	23008		NM_014997	ENSG00000128607	KLHDC10	PNAS-138|slim	kelch domain containing 10	protein-coding
165043	chr3	71434271	71434650	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	107629	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
91433	chr17	4739311	4741330	+	0	NA	promoter-TSS (NM_001100812)	promoter-TSS (NM_001100812)	305	NM_032265	84225		NM_032265	ENSG00000141497	ZMYND15	SPGF14	zinc finger MYND-type containing 15	protein-coding
164445	chr3	59443921	59445050	+	0	NA	Intergenic	MIRb|SINE|MIR	214012	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
225149	chr9	33752071	33752300	+	0	NA	intron (NM_001197098, intron 1 of 4)	intron (NM_001197098, intron 1 of 4)	1364	NM_001197098	5646		NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	serine protease 3	protein-coding
89852	chr16	89600351	89601580	+	0	NA	Intergenic	Intergenic	-12343	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
75400	chr15	65760651	65760750	+	0	NA	intron (NM_001376920, intron 1 of 30)	AluSz|SINE|Alu	31593	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
218803	chr8	59045671	59046030	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	73297	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
172528	chr4	2296551	2297300	+	0	NA	intron (NM_020972, intron 8 of 12)	intron (NM_020972, intron 8 of 12)	-34816	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
125999	chr2	25307801	25308000	+	0	NA	intron (NR_135490, intron 2 of 23)	intron (NR_135490, intron 2 of 23)	20821	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
215888	chr8	8028501	8028700	+	0	NA	Intergenic	Intergenic	-31079	NM_001037380	641517		NM_001037380	ENSG00000206034	DEFB109B	DEF109P1B|DEFB109|DEFB109P1B|HBD9	defensin beta 109B	protein-coding
192351	chr6	24501421	24501680	+	0	NA	intron (NM_170740, intron 1 of 10)	intron (NM_170740, intron 1 of 10)	6581	NM_001368954	7915		NM_001080	ENSG00000112294	ALDH5A1	SSADH|SSDH	aldehyde dehydrogenase 5 family member A1	protein-coding
75168	chr15	64651301	64652550	+	0	NA	intron (NM_015042, intron 3 of 9)	intron (NM_015042, intron 3 of 9)	51356	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
21598	chr1	206553671	206553830	+	0	NA	intron (NM_182663, intron 2 of 5)	intron (NM_182663, intron 2 of 5)	-3414	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
54413	chr12	90199021	90199280	+	0	NA	Intergenic	Intergenic	-94168	NR_135018	105369893		NR_135018	ENSG00000258183	LINC02392	-	long intergenic non-protein coding RNA 2392	ncRNA
208215	chr7	65229371	65230180	+	0	NA	intron (NR_146906, intron 15 of 17)	AluSc8|SINE|Alu	88745	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
40037	chr11	62696101	62696330	+	0	NA	intron (NR_037948, intron 4 of 11)	intron (NR_037948, intron 4 of 11)	-6685	NM_203422	221091		NM_203422	ENSG00000177363	LRRN4CL	-	LRRN4 C-terminal like	protein-coding
27140	chr10	28299921	28300700	+	0	NA	intron (NM_001318170, intron 1 of 16)	intron (NM_001318170, intron 1 of 16)	2754	NR_134518	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
88461	chr16	85016501	85017250	+	0	NA	Intergenic	Intergenic	-5340	NM_001145548	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
84230	chr16	29977401	29977600	+	0	NA	intron (NM_016151, intron 1 of 15)	intron (NM_016151, intron 1 of 15)	3632	NM_001252043	9344		NM_004783	ENSG00000149930	TAOK2	MAP3K17|PSK|PSK1|PSK1-BETA|TAO1|TAO2|Tao2beta	TAO kinase 2	protein-coding
19443	chr1	174769921	174770300	+	0	NA	intron (NM_001366447, intron 18 of 20)	intron (NM_001366447, intron 18 of 20)	-29628	NM_001330989	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
47673	chr12	6340001	6340850	+	0	NA	intron (NR_144351, intron 1 of 8)	MIR|SINE|MIR	1651	NM_001346091	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
156380	chr22	41098571	41098730	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluY|SINE|Alu	6058	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
58021	chr12	124399421	124400250	+	0	NA	intron (NM_001077261, intron 17 of 47)	intron (NM_001077261, intron 17 of 47)	-62593	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
71869	chr15	22362371	22362830	+	0	NA	Intergenic	Intergenic	75426	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
148899	chr21	8468751	8469280	+	0	NA	Intergenic	Intergenic	27869	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
146381	chr20	49283401	49284280	+	0	NA	intron (NR_003604, intron 4 of 4)	HERVIP10B3-int|LTR|ERV1	3157	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
75861	chr15	69667351	69667680	+	0	NA	intron (NR_126437, intron 3 of 5)	intron (NR_126437, intron 3 of 5)	75315	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
44455	chr11	104946901	104947500	+	0	NA	intron (NM_001225, intron 6 of 8)	intron (NM_001225, intron 6 of 8)	21374	NM_001225	837		NM_001225	ENSG00000196954	CASP4	ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX	caspase 4	protein-coding
66629	chr14	63799571	63800000	+	0	NA	Intergenic	Intergenic	-53219	NM_015180	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
53556	chr12	67578851	67579830	+	0	NA	Intergenic	Intergenic	59258	NR_103861	100507175		NR_103861	ENSG00000203585	LINC02408	-	long intergenic non-protein coding RNA 2408	ncRNA
374	chr1	1035251	1035450	+	0	NA	intron (NM_198576, intron 3 of 35)	intron (NM_198576, intron 3 of 35)	1357	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
57754	chr12	122972821	122973130	+	0	NA	Intergenic	MIRb|SINE|MIR	-1751	NM_001304836	79676		NM_024623	ENSG00000111325	OGFOD2	-	2-oxoglutarate and iron dependent oxygenase domain containing 2	protein-coding
69068	chr14	91996961	91997830	+	0	NA	intron (NM_001321851, intron 13 of 20)	L2b|LINE|L2	42664	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
189089	chr5	170291271	170291850	+	0	NA	intron (NM_005565, intron 2 of 20)	intron (NM_005565, intron 2 of 20)	6217	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
174348	chr4	38729071	38729230	+	0	NA	Intergenic	Intergenic	53840	NM_030956	81793		NM_030956	ENSG00000174123	TLR10	CD290	toll like receptor 10	protein-coding
213128	chr7	131356521	131356980	+	0	NA	intron (NM_001321316, intron 1 of 17)	MER50-int|LTR|ERV1	28874	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
249	chr1	911321	911780	+	0	NA	Intergenic	Intergenic	8142	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
30650	chr10	80468701	80469750	+	0	NA	intron (NM_001351272, intron 2 of 9)	intron (NM_001351272, intron 2 of 9)	984	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
63932	chr14	22026451	22026830	+	0	NA	Intergenic	L1PBb|LINE|L1	-355623	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
201285	chr6	144302621	144303500	+	0	NA	intron (NM_007124, intron 1 of 73)	L2c|LINE|L2	11323	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
88800	chr16	87390001	87390550	+	0	NA	intron (NM_001282683, intron 1 of 9)	AluSx1|SINE|Alu	1846	NM_001282683	79791		NM_024735	ENSG00000103264	FBXO31	FBX14|FBXO14|Fbx31|MRT45|pp2386	F-box protein 31	protein-coding
237534	chrX	120344551	120344930	+	0	NA	Intergenic	L1PA4|LINE|L1	-17349	NM_012069	23439		NM_012069	ENSG00000101892	ATP1B4	-	ATPase Na+/K+ transporting family member beta 4	protein-coding
204133	chr7	2352501	2352700	+	0	NA	Intergenic	AluY|SINE|Alu	-1486	NM_001362792	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
81583	chr16	10256801	10257100	+	0	NA	Intergenic	Intergenic	-74042	NM_000833	2903		NM_000833	ENSG00000183454	GRIN2A	EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A	glutamate ionotropic receptor NMDA type subunit 2A	protein-coding
160555	chr3	30683551	30684000	+	0	NA	intron (NM_001024847, intron 6 of 7)	intron (NM_001024847, intron 6 of 7)	77174	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
186681	chr5	138656351	138656450	+	0	NA	Intergenic	AluJr|SINE|Alu	-80999	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
40944	chr11	65314071	65315200	+	0	NA	promoter-TSS (NM_006779)	promoter-TSS (NM_006779)	-231	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
88295	chr16	84086151	84086750	+	0	NA	intron (NM_003791, intron 9 of 22)	intron (NM_003791, intron 9 of 22)	30492	NM_003791	8720		NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SEDKF|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
146835	chr20	51413701	51414400	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	38927	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
63557	chr14	20345921	20346680	+	0	NA	intron (NM_001042618, intron 3 of 15)	intron (NM_001042618, intron 3 of 15)	2665	NM_001042618	10038		NM_005484	ENSG00000129484	PARP2	ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2	poly(ADP-ribose) polymerase 2	protein-coding
34026	chr10	124714671	124714830	+	0	NA	TTS (NR_120630)	TTS (NR_120630)	10722	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
75201	chr15	64826871	64827030	+	0	NA	Intergenic	MIRc|SINE|MIR	-1303	NM_001286497	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
71209	chr14	105086551	105088130	+	0	NA	Intergenic	CpG	-6807	NR_110546	102723354		NR_110546		LINC02298	-	long intergenic non-protein coding RNA 2298	ncRNA
199224	chr6	111811971	111812780	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-52458	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
91106	chr17	3665851	3666900	+	0	NA	intron (NR_037928, intron 12 of 14)	intron (NR_037928, intron 12 of 14)	2203	NM_014604	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
88260	chr16	82660051	82660470	+	0	NA	intron (NM_001220488, intron 2 of 14)	intron (NM_001220488, intron 2 of 14)	-28671	NR_107025	102465863		NR_107025	ENSG00000277387	MIR8058	hsa-mir-8058	microRNA 8058	ncRNA
84431	chr16	30389251	30389550	+	0	NA	intron (NM_001214907, intron 1 of 1)	AluY|SINE|Alu	-6020	NM_001214909	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
173039	chr4	4868221	4868480	+	0	NA	Intergenic	Intergenic	8685	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
92502	chr17	8883801	8884300	+	0	NA	intron (NM_001142633, intron 15 of 18)	L2b|LINE|L2	-16373	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
198934	chr6	110399651	110400150	+	0	NA	intron (NR_160546, intron 2 of 2)	CpG	15675	NM_001372108	8528		NM_003649	ENSG00000203797	DDO	DASOX|DASPO|DDO-1|DDO-2	D-aspartate oxidase	protein-coding
217537	chr8	29286851	29287150	+	0	NA	Intergenic	Intergenic	-23930	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
190421	chr5	179828851	179829380	+	0	NA	intron (NM_003900, intron 5 of 7).2	intron (NM_003900, intron 5 of 7).2	8210	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
7352	chr1	32771621	32772150	+	0	NA	exon (NM_001198972, exon 6 of 7)	exon (NM_001198972, exon 6 of 7)	6258	NM_001198972	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
44044	chr11	95157421	95158250	+	0	NA	intron (NR_110303, intron 2 of 2)	intron (NR_110303, intron 2 of 2)	7296	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
176543	chr4	98275101	98275700	+	0	NA	intron (NM_001100427, intron 1 of 14)	Cheshire|DNA|hAT-Charlie	14016	NM_001100428	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
39114	chr11	48082721	48082980	+	0	NA	intron (NM_002843, intron 1 of 24)	MIRb|SINE|MIR	-13932	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
205691	chr7	23207321	23207780	+	0	NA	Intergenic	Intergenic	25502	NM_001370444	11097		NM_007342	ENSG00000136243	NUP42	CG1|NLP-1|NLP1|NLP_1|NUPL2|UIP1|hCG1	nucleoporin 42	protein-coding
179740	chr5	230651	231300	+	0	NA	exon (NM_001294332, exon 6 of 14)	exon (NM_001294332, exon 6 of 14)	12655	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
103966	chr17	79942701	79943250	+	0	NA	TTS (NM_001271846)	TTS (NM_001271846)	7878	NM_001271844	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
130630	chr2	86042451	86042750	+	0	NA	intron (NM_015425, intron 23 of 33)	LTR33|LTR|ERVL	63286	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
210361	chr7	99579851	99581150	+	0	NA	Intergenic	Intergenic	-17767	NM_001195542	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
195541	chr6	37432501	37434900	+	0	NA	intron (NM_015050, intron 1 of 23)	intron (NM_015050, intron 1 of 23)	479	NM_015050	23070		NM_015050	ENSG00000137200	CMTR1	FTSJD2|KIAA0082|MTr1|hMTr1	cap methyltransferase 1	protein-coding
207381	chr7	44122971	44124650	+	0	NA	promoter-TSS (NM_001256879)	promoter-TSS (NM_001256879)	-240	NM_001127218	5425		NM_006230	ENSG00000106628	POLD2	-	DNA polymerase delta 2, accessory subunit	protein-coding
230136	chr9	127731971	127732130	+	0	NA	TTS (NM_001317037)	TTS (NM_001317037)	3244	NM_001252018	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
118306	chr19	35452771	35452930	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	4593	NM_001370087	2867		NM_005306	ENSG00000126262	FFAR2	FFA2R|GPR43	free fatty acid receptor 2	protein-coding
30926	chr10	87214351	87215280	+	0	NA	Intergenic	Intergenic	-10633	NM_001099338	728118		NM_001099338	ENSG00000184923	NUTM2A	FAM22A	NUT family member 2A	protein-coding
143327	chr20	25584921	25586100	+	0	NA	promoter-TSS (NM_025176)	promoter-TSS (NM_025176)	21	NM_025176	22981		NM_025176	ENSG00000101004	NINL	NLP	ninein like	protein-coding
101807	chr17	73314471	73314850	+	0	NA	Intergenic	AluJb|SINE|Alu	-2659	NM_012121	23580		NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein 4	protein-coding
231809	chr9	132409571	132410400	+	0	NA	promoter-TSS (NM_001282957)	promoter-TSS (NM_001282957)	-226	NM_001282957	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
22506	chr1	221775721	221776180	+	0	NA	Intergenic	Intergenic	-33774	NR_111940	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
143243	chr20	25042701	25044180	+	0	NA	intron (NM_001252675, intron 2 of 13)	intron (NM_001252675, intron 2 of 13)	-10734	NM_001252676	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
33608	chr10	119541571	119542100	+	0	NA	intron (NM_001005339, intron 1 of 4)	intron (NM_001005339, intron 1 of 4)	884	NM_001005339	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
183771	chr5	81778751	81779900	+	0	NA	Intergenic	Intergenic	-28072	NM_001256732	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
21102	chr1	203480471	203481050	+	0	NA	intron (NM_002725, intron 1 of 2)	intron (NM_002725, intron 1 of 2)	4954	NM_002725	5549		NM_002725	ENSG00000188783	PRELP	MST161|MSTP161|SLRR2A	proline and arginine rich end leucine rich repeat protein	protein-coding
166176	chr3	111673921	111675180	+	0	NA	promoter-TSS (NM_001185106)	promoter-TSS (NM_001185106)	-126	NM_153268	257068		NM_153268	ENSG00000240891	PLCXD2	-	phosphatidylinositol specific phospholipase C X domain containing 2	protein-coding
44552	chr11	108161021	108161500	+	0	NA	exon (NM_002519, exon 17 of 18)	exon (NM_002519, exon 17 of 18)	39693	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
2695	chr1	10635571	10635750	+	0	NA	TTS (NM_001079843)	TTS (NM_001079843)	160710	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
48967	chr12	12927301	12927850	+	0	NA	promoter-TSS (NR_149063)	promoter-TSS (NR_149063)	-151	NR_149066	100506314		NR_038920	ENSG00000247498	GPRC5D-AS1	-	GPRC5D and HEBP1 antisense RNA 1	ncRNA
53302	chr12	64494771	64495280	+	0	NA	intron (NM_013254, intron 13 of 20)	intron (NM_013254, intron 13 of 20)	42905	NM_013254	29110		NM_013254	ENSG00000183735	TBK1	FTDALS4|IIAE8|NAK|T2K	TANK binding kinase 1	protein-coding
36052	chr11	2940271	2941930	+	0	NA	Intergenic	Intergenic	-11680	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
124154	chr19	56080671	56081230	+	0	NA	Intergenic	Intergenic	14266	NR_110741	101928886		NR_110741	ENSG00000267522	LINC01864	-	long intergenic non-protein coding RNA 1864	ncRNA
114101	chr19	11123201	11123930	+	0	NA	intron (NM_001195800, intron 13 of 15)	MIR|SINE|MIR	10091	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
8150	chr1	39406401	39406600	+	0	NA	intron (NM_012090, intron 52 of 92)	AluSx|SINE|Alu	-2573	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
101586	chr17	68075571	68075730	+	0	NA	Intergenic	AluSz6|SINE|Alu	-25905	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
149784	chr21	34894551	34895000	+	0	NA	intron (NM_001754, intron 2 of 8)	MIRb|SINE|MIR	-6076	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
67110	chr14	68377521	68378350	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	250852	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
177965	chr4	139024971	139025330	+	0	NA	intron (NM_012118, intron 1 of 2)	HAL1ME|LINE|L1	9369	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
135945	chr2	171956551	171956650	+	0	NA	intron (NR_027862, intron 3 of 9)	MLT1D-int|LTR|ERVL-MaLR	34139	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
170802	chr3	189142221	189143100	+	0	NA	Intergenic	Intergenic	-29311	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
79575	chr16	995801	996000	+	0	NA	Intergenic	L1M5|LINE|L1	14130	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
176270	chr4	87041271	87041630	+	0	NA	intron (NM_001313960, intron 1 of 17)	MER5A|DNA|hAT-Charlie	34449	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
120762	chr19	45422101	45422450	+	0	NA	intron (NM_001369409, intron 2 of 8)	L2a|LINE|L2	1253	NM_001369416	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
90253	chr17	860451	860550	+	0	NA	intron (NM_022463, intron 1 of 7)	AluSx|SINE|Alu	3611	NM_001205319	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
53971	chr12	74536921	74538300	+	0	NA	promoter-TSS (NM_001136262)	promoter-TSS (NM_001136262)	-225	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
153571	chr22	26664051	26664350	+	0	NA	intron (NR_033320, intron 2 of 4)	AluSz6|SINE|Alu	6718	NR_033319	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
10389	chr1	65041421	65041680	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	16292	NR_037443	100500854		NR_037443	ENSG00000265996	MIR3671	-	microRNA 3671	ncRNA
202706	chr6	158817801	158820900	+	0	NA	promoter-TSS (NM_001111077)	promoter-TSS (NM_001111077)	18	NM_001111077	7430		NM_003379	ENSG00000092820	EZR	CVIL|CVL|HEL-S-105|VIL2	ezrin	protein-coding
117663	chr19	24033071	24034350	+	0	NA	intron (NM_001278677, intron 1 of 5)	intron (NM_001278677, intron 1 of 5)	261	NM_001278663	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
100683	chr17	63814751	63815050	+	0	NA	intron (NM_203499, intron 15 of 17)	AluSz|SINE|Alu	-12531	NM_002805	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
103998	chr17	80095521	80095980	+	0	NA	intron (NM_017950, intron 18 of 19)	intron (NM_017950, intron 18 of 19)	-3078	NR_039607	100616121		NR_039607	ENSG00000265561	MIR1268B	-	microRNA 1268b	ncRNA
9492	chr1	51235851	51239130	+	0	NA	intron (NM_014372, intron 1 of 2)	intron (NM_014372, intron 1 of 2)	1217	NM_014372	26994		NM_014372	ENSG00000123091	RNF11	CGI-123|SID1669	ring finger protein 11	protein-coding
6685	chr1	29152871	29153230	+	0	NA	intron (NM_005626, intron 4 of 5)	L2b|LINE|L2	28850	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
136090	chr2	173370221	173370780	+	0	NA	Intergenic	Intergenic	15628	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
127446	chr2	42183301	42184350	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-13594	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226376	chr9	70270151	70270450	+	0	NA	intron (NM_015110, intron 3 of 24)	MER21C|LTR|ERVL	11322	NM_015110	23137		NM_015110	ENSG00000198887	SMC5	ATELS2|SMC5L1	structural maintenance of chromosomes 5	protein-coding
233850	chrX	1513751	1514250	+	0	NA	intron (NM_178129, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	23185	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
61378	chr13	51445771	51445930	+	0	NA	3' UTR (NM_001039938, exon 3 of 3)	3' UTR (NM_001039938, exon 3 of 3)	7186	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
47900	chr12	6748251	6748350	+	0	NA	3' UTR (NM_005439, exon 9 of 9)	3' UTR (NM_005439, exon 9 of 9)	4616	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
20605	chr1	198922021	198922280	+	0	NA	intron (NR_040073, intron 1 of 2)	intron (NR_040073, intron 1 of 2)	15279	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
143570	chr20	31663101	31663480	+	0	NA	Intergenic	AluY|SINE|Alu	25378	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
164702	chr3	67674121	67674450	+	0	NA	intron (NR_109992, intron 3 of 6)	MSTA|LTR|ERVL-MaLR	19588	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
108516	chr18	74293221	74293880	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-1587	NM_001190807	1528		NM_001914	ENSG00000166347	CYB5A	CYB5|MCB5|METAG	cytochrome b5 type A	protein-coding
36544	chr11	6605821	6606400	+	0	NA	TTS (NM_006284)	TTS (NM_006284)	2336	NM_001014795	3611		NM_004517	ENSG00000166333	ILK	HEL-S-28|ILK-1|ILK-2|P59|p59ILK	integrin linked kinase	protein-coding
201169	chr6	142945101	142945700	+	0	NA	promoter-TSS (NM_006734)	promoter-TSS (NM_006734)	-224	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
131167	chr2	91808801	91809630	+	0	NA	Intergenic	CpG	33873	NR_003503	645367		NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
159135	chr3	12647471	12647950	+	0	NA	intron (NM_001354691, intron 1 of 16)	intron (NM_001354691, intron 1 of 16)	15798	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
41812	chr11	66975671	66976430	+	0	NA	intron (NM_001136485, intron 1 of 1)	intron (NM_001136485, intron 1 of 1)	746	NM_001136485	254439		NM_001136485	ENSG00000173237	C11orf86	FACI	chromosome 11 open reading frame 86	protein-coding
98616	chr17	47776351	47777500	+	0	NA	Intergenic	Intergenic	43689	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
72117	chr15	28951371	28951730	+	0	NA	intron (NM_001353793, intron 1 of 12).2	L1MC3|LINE|L1	17546	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
230614	chr9	128625951	128626500	+	0	NA	intron (NM_001375310, intron 48 of 57)	intron (NM_001375310, intron 48 of 57)	30625	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
122832	chr19	50419751	50419850	+	0	NA	intron (NM_003121, intron 1 of 5)	intron (NM_003121, intron 1 of 5)	862	NM_001243999	6689		NM_003121	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor	protein-coding
52787	chr12	56709971	56710600	+	0	NA	Intergenic	AluJb|SINE|Alu	15014	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
108831	chr18	79066651	79066950	+	0	NA	Intergenic	Intergenic	-2594	NM_001306085	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
100784	chr17	64013321	64013580	+	0	NA	intron (NM_001099788, intron 1 of 5)	AluJb|SINE|Alu	-6527	NM_000873	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
147414	chr20	58868771	58868930	+	0	NA	intron (NR_126334, intron 3 of 4)	intron (NR_126334, intron 3 of 4)	15869	NM_001077490	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
117764	chr19	29682051	29682150	+	0	NA	Intergenic	Intergenic	16639	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
59482	chr13	26377151	26377250	+	0	NA	intron (NM_001346501, intron 4 of 11)	intron (NM_001346501, intron 4 of 11)	123071	NM_001318368	1024		NM_001260	ENSG00000132964	CDK8	IDDHBA|K35	cyclin dependent kinase 8	protein-coding
162559	chr3	48651671	48652430	+	0	NA	intron (NM_001407, intron 11 of 34)	intron (NM_001407, intron 11 of 34)	-7770	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
123005	chr19	51017971	51018130	+	0	NA	intron (NM_145888, intron 2 of 5)	AluJb|SINE|Alu	1659	NM_145888	5655		NM_002776	ENSG00000129451	KLK10	NES1|PRSSL1	kallikrein related peptidase 10	protein-coding
76827	chr15	77181301	77182130	+	0	NA	exon (NM_001385026, exon 7 of 10)	exon (NM_001385026, exon 7 of 10)	43689	NR_026813	81698		NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	ncRNA
46526	chr11	128457301	128457580	+	0	NA	Intergenic	Intergenic	64870	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
53748	chr12	68648301	68648730	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	-21140	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
61667	chr13	73956271	73956630	+	0	NA	intron (NM_007249, intron 2 of 7)	MER20|DNA|hAT-Charlie	177479	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
149683	chr21	33931071	33932220	+	0	NA	non-coding (NR_134559, exon 1 of 2)	non-coding (NR_134559, exon 1 of 2)	431	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
9002	chr1	44707871	44708430	+	0	NA	intron (NM_001145636, intron 6 of 11)	intron (NM_001145636, intron 6 of 11)	13751	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
129858	chr2	72924821	72925480	+	0	NA	intron (NM_004097, intron 2 of 2)	intron (NM_004097, intron 2 of 2)	7631	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
211206	chr7	102621051	102621530	+	0	NA	Intergenic	AluJr|SINE|Alu	-4532	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
12995	chr1	110989821	110990080	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-26006	NM_001006945	55791		NM_018372	ENSG00000121931	LRIF1	C1orf103|FSHD3|HBiX1|RIF1	ligand dependent nuclear receptor interacting factor 1	protein-coding
177851	chr4	128059351	128059850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1712	NM_178043	55132		NM_018078	ENSG00000138709	LARP1B	LARP2	La ribonucleoprotein 1B	protein-coding
230713	chr9	128788571	128788730	+	0	NA	intron (NM_018201, intron 2 of 11)	intron (NM_018201, intron 2 of 11)	1397	NM_018201	54662		NM_018201	ENSG00000107021	TBC1D13	-	TBC1 domain family member 13	protein-coding
173333	chr4	7653751	7653850	+	0	NA	intron (NM_020777, intron 4 of 26)	intron (NM_020777, intron 4 of 26)	-100290	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
87207	chr16	69442501	69442700	+	0	NA	intron (NM_030579, intron 1 of 4)	AluJr4|SINE|Alu	17981	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
203148	chr6	166973551	166973650	+	0	NA	Intergenic	AluSg7|SINE|Alu	-17050	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
198078	chr6	90251471	90252030	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	45093	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
113477	chr19	9969251	9969550	+	0	NA	exon (NM_015719, exon 57 of 67)	exon (NM_015719, exon 57 of 67)	-32885	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
107211	chr18	36132001	36132230	+	0	NA	intron (NM_001324468, intron 1 of 20)	AluSz6|SINE|Alu	2216	NM_001242879	55250		NM_018255	ENSG00000134759	ELP2	MRT58|SHINC-2|STATIP1|StIP	elongator acetyltransferase complex subunit 2	protein-coding
28612	chr10	58265801	58266900	+	0	NA	intron (NM_152230, intron 1 of 5)	intron (NM_152230, intron 1 of 5)	1544	NM_152230	253430		NM_152230	ENSG00000151151	IPMK	-	inositol polyphosphate multikinase	protein-coding
116419	chr19	18006501	18007400	+	0	NA	intron (NM_001025604, intron 1 of 7)	intron (NM_001025604, intron 1 of 7)	-1220	NM_001286826	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
156499	chr22	41292401	41292600	+	0	NA	intron (NM_001317930, intron 1 of 15)	AluSg|SINE|Alu	-6313	NM_001278651	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
83229	chr16	23840271	23840950	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	4627	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
13274	chr1	112809221	112809550	+	0	NA	Intergenic	Intergenic	41258	NR_103746	100996702		NR_103746	ENSG00000215866	LINC01356	LIMp27	long intergenic non-protein coding RNA 1356	ncRNA
146769	chr20	50892401	50892600	+	0	NA	exon (NM_001282532, exon 4 of 4)	exon (NM_001282532, exon 4 of 4)	17291	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
235195	chrX	41342351	41343050	+	0	NA	intron (NM_001193417, intron 4 of 15)	intron (NM_001193417, intron 4 of 15)	8534	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
12960	chr1	110882801	110883230	+	0	NA	intron (NM_001040033, intron 2 of 8)	L1ME1|LINE|L1	9867	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
188945	chr5	160477321	160478130	+	0	NA	intron (NR_132748, intron 1 of 1)	intron (NR_132748, intron 1 of 1)	3323	NR_036095	100422938		NR_036095		MIR3142	-	microRNA 3142	ncRNA
85760	chr16	56862101	56862300	+	0	NA	Intergenic	Intergenic	-3007	NM_001126107	6559		NM_000339	ENSG00000070915	SLC12A3	NCC|NCCT|TSC	solute carrier family 12 member 3	protein-coding
215572	chr7	158822821	158824980	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	5609	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
166149	chr3	111570201	111570930	+	0	NA	intron (NR_134917, intron 3 of 14)	intron (NR_134917, intron 3 of 14)	24781	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
151417	chr21	46093501	46094330	+	0	NA	Intergenic	Intergenic	-4197	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
226043	chr9	43135451	43135550	+	0	NA	intron (NR_160669, intron 3 of 3)	intron (NR_160669, intron 3 of 3)	9334	NR_160669	102724904		NR_160669	ENSG00000291167	LOC102724904	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
28435	chr10	48391151	48391500	+	0	NA	intron (NM_001323302, intron 3 of 13)	intron (NM_001323302, intron 3 of 13)	-10287	NM_001278548	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
111497	chr19	3970381	3973800	+	0	NA	promoter-TSS (NM_001375658)	promoter-TSS (NM_001375658)	-991	NM_001375658	1613		NM_001348	ENSG00000167657	DAPK3	DLK|ZIP|ZIPK	death associated protein kinase 3	protein-coding
209193	chr7	75415871	75416180	+	0	NA	TTS (NM_001099415)	TTS (NM_001099415)	5703	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
210438	chr7	100098401	100098800	+	0	NA	exon (NM_005916, exon 6 of 15)	exon (NM_005916, exon 6 of 15)	2180	NM_182776	4176		NM_005916	ENSG00000166508	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146|PPP1R104	minichromosome maintenance complex component 7	protein-coding
197900	chr6	89354071	89355050	+	0	NA	Intergenic	Intergenic	-1838	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
177357	chr4	110199871	110200030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1335	NM_024090	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
167759	chr3	132470671	132471230	+	0	NA	intron (NM_015268, intron 20 of 55)	SVA_F|Retroposon|SVA	53448	NM_015268	23317		NM_015268	ENSG00000138246	DNAJC13	PARK21|RME8	DnaJ heat shock protein family (Hsp40) member C13	protein-coding
222202	chr8	133051751	133052250	+	0	NA	intron (NM_001282965, intron 1 of 6)	L2b|LINE|L2	-2959	NR_146773	100302522		NR_146773	ENSG00000287736	PTCSC1	NCRNA00197|PTCSC	papillary thyroid carcinoma susceptibility candidate 1	ncRNA
208201	chr7	65073101	65073300	+	0	NA	intron (NR_033416, intron 9 of 10)	intron (NR_033416, intron 9 of 10)	2662	NR_145713	109617022		NR_145713	ENSG00000206785	SNORA15B-2	SNORA15C	small nucleolar RNA, H/ACA box 15B-2	snoRNA
134700	chr2	144496821	144497630	+	0	NA	intron (NM_014795, intron 2 of 9)	L2c|LINE|L2	-22389	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
78701	chr15	97909371	97909630	+	0	NA	Intergenic	Intergenic	-35071	NR_024172	91948		NR_024172	ENSG00000251209	LINC00923	-	long intergenic non-protein coding RNA 923	ncRNA
100266	chr17	59567621	59568080	+	0	NA	intron (NM_024612, intron 2 of 17)	AluY|SINE|Alu	2240	NM_024612	79665		NM_024612	ENSG00000108406	DHX40	ARG147|DDX40|PAD	DEAH-box helicase 40	protein-coding
117286	chr19	19482251	19482430	+	0	NA	intron (NM_001384541, intron 2 of 10)	AluSx1|SINE|Alu	33208	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
112564	chr19	6593921	6594330	+	0	NA	Intergenic	Intergenic	-2975	NM_001252	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
85795	chr16	56956071	56956230	+	0	NA	Intergenic	L1MB2|LINE|L1	-5800	NM_001286085	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
24291	chr1	236531551	236532180	+	0	NA	intron (NM_201544, intron 2 of 9)	MER68|LTR|ERVL	-7357	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
17556	chr1	156805771	156806280	+	0	NA	TTS (NM_003975)	TTS (NM_003975)	-9725	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
166092	chr3	109731771	109732180	+	0	NA	Intergenic	Intergenic	129147	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
13754	chr1	116991651	116992030	+	0	NA	Intergenic	MER74A|LTR|ERVL	-9910	NM_001256111	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
97875	chr17	45049901	45050100	+	0	NA	intron (NM_001288654, intron 1 of 4)	AluSx1|SINE|Alu	1632	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
158487	chr3	11621	12350	+	0	NA	intron (NR_110824, intron 1 of 3)	LTR1A1|LTR|ERV1	234	NR_110824	102723448		NR_110824	ENSG00000223587	LINC01986	-	long intergenic non-protein coding RNA 1986	ncRNA
197650	chr6	84626851	84626950	+	0	NA	Intergenic	L1PA2|LINE|L1	-62558	NR_125877	102724201		NR_125875	ENSG00000228290	TBX18-AS1	-	TBX18 antisense RNA 1	ncRNA
19949	chr1	184840401	184842100	+	0	NA	intron (NM_052966, intron 5 of 13)	L3|LINE|CR1	-86392	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
54919	chr12	96186621	96186950	+	0	NA	Intergenic	Intergenic	-7590	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
94566	chr17	29621021	29621380	+	0	NA	intron (NM_032854, intron 1 of 9)	intron (NM_032854, intron 1 of 9)	223	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
140943	chr2	237742471	237742850	+	0	NA	intron (NM_001137550, intron 11 of 23)	intron (NM_001137550, intron 11 of 23)	50455	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
207506	chr7	44770851	44770950	+	0	NA	Intergenic	AluJr|SINE|Alu	14712	NM_174929	83637		NM_031449	ENSG00000122515	ZMIZ2	NET27|TRAFIP20|ZIMP7|hZIMP7	zinc finger MIZ-type containing 2	protein-coding
25624	chr10	8081051	8081350	+	0	NA	Intergenic	Intergenic	26512	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
90773	chr17	2064621	2065380	+	0	NA	intron (NM_001282326, intron 6 of 6)	intron (NM_001282326, intron 6 of 6)	8690	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
91939	chr17	7338051	7338550	+	0	NA	intron (NM_014716, intron 2 of 21)	AluSz|SINE|Alu	1771	NM_014716	9744		NM_014716	ENSG00000072818	ACAP1	CENTB1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding
95931	chr17	38925101	38925750	+	0	NA	non-coding (NR_038847, exon 1 of 2)	non-coding (NR_038847, exon 1 of 2)	257	NR_038847	100505576		NM_001414697	ENSG00000263874	LASP1NB	LINC00672	LASP1 neighbor	protein-coding
208080	chr7	56092671	56093880	+	0	NA	promoter-TSS (NM_001258459)	promoter-TSS (NM_001258459)	-279	NR_047689	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
72319	chr15	31260071	31260230	+	0	NA	Intergenic	L1ME3A|LINE|L1	-29288	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
118581	chr19	36304101	36304500	+	0	NA	Intergenic	SST1|Satellite|centr	-7043	NR_029389	100134317		NR_029389		LOC100134317	-	uncharacterized LOC100134317	ncRNA
75886	chr15	69752551	69752650	+	0	NA	Intergenic	MIR|SINE|MIR	-82634	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
45587	chr11	118886501	118887030	+	0	NA	intron (NM_001716, intron 1 of 1)	intron (NM_001716, intron 1 of 1)	2873	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
31511	chr10	96717101	96717750	+	0	NA	intron (NM_152309, intron 1 of 16)	intron (NM_152309, intron 1 of 16)	3089	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
214063	chr7	143391601	143392150	+	0	NA	TTS (NM_001010972)	TTS (NM_001010972)	9189	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
35519	chr11	1556651	1558700	+	0	NA	intron (NM_004420, intron 6 of 6)	CpG	14596	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
215465	chr7	158148201	158148780	+	0	NA	intron (NM_130842, intron 5 of 21)	intron (NM_130842, intron 5 of 21)	293905	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
141590	chr2	241619951	241620730	+	0	NA	intron (NM_015963, intron 2 of 5)	(GTGA)n|Simple_repeat|Simple_repeat	-2839	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
149266	chr21	26169101	26170000	+	0	NA	intron (NM_001136131, intron 1 of 15)	intron (NM_001136131, intron 1 of 15)	1220	NM_201414	351		NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|alpha-sAPP|preA4	amyloid beta precursor protein	protein-coding
221425	chr8	123770051	123770450	+	0	NA	intron (NM_001317918, intron 1 of 22)	AluSg|SINE|Alu	1811	NM_001317918	157769		NM_144963	ENSG00000176853	FAM91A1	-	family with sequence similarity 91 member A1	protein-coding
228628	chr9	105718421	105718700	+	0	NA	intron (NM_018112, intron 2 of 5)	intron (NM_018112, intron 2 of 5)	24019	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
91288	chr17	4145521	4145780	+	0	NA	intron (NM_144611, intron 1 of 3)	L2c|LINE|L2	1953	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
201010	chr6	141307571	141307800	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	623871	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
111511	chr19	3991221	3991530	+	0	NA	Intergenic	AluSc5|SINE|Alu	-5912	NM_001961	1938		NM_001961	ENSG00000167658	EEF2	EEF-2|EF-2|EF2|SCA26	eukaryotic translation elongation factor 2	protein-coding
151591	chr21	46665671	46666280	+	0	NA	TTS (NM_001242864)	TTS (NM_001242864)	30301	NM_001242866	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
57122	chr12	121196801	121197350	+	0	NA	Intergenic	Intergenic	-13054	NR_046372	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
34396	chr10	132381801	132382000	+	0	NA	TTS (NM_001143757)	TTS (NM_001143757)	-15300	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
101978	chr17	74748021	74750220	+	0	NA	TTS (NR_037409)	TTS (NR_037409)	492	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
88486	chr16	85106471	85106630	+	0	NA	intron (NM_001366920, intron 4 of 7)	MLT1D|LTR|ERVL-MaLR	5922	NM_198491	339145		NM_198491	ENSG00000153789	CIBAR2	FAM92B	CBY1 interacting BAR domain containing 2	protein-coding
67451	chr14	70809001	70810380	+	0	NA	promoter-TSS (NM_001284230)	promoter-TSS (NM_001284230)	-177	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
238339	chrX	149545051	149545150	+	0	NA	intron (NM_001171909, intron 1 of 4)	intron (NM_001171909, intron 1 of 4)	580	NM_001171909	91966		NM_178124	ENSG00000197620	EOLA1	CXorf40|CXorf40A	endothelium and lymphocyte associated ASCH domain 1	protein-coding
223539	chr8	144141221	144142200	+	0	NA	TTS (NM_016458)	TTS (NM_016458)	3936	NM_016458	51236		NM_016458	ENSG00000235173	HGH1	BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B	HGH1 homolog	protein-coding
10187	chr1	61724451	61725830	+	0	NA	promoter-TSS (NM_032027)	promoter-TSS (NM_032027)	1	NM_032027	83941		NM_032027	ENSG00000162604	TM2D1	BBP	TM2 domain containing 1	protein-coding
110109	chr19	1557621	1558430	+	0	NA	intron (NM_203304, intron 1 of 1)	AluSc|SINE|Alu	10033	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
108337	chr18	63994671	63995150	+	0	NA	intron (NM_001348367, intron 6 of 7)	MER76-int|LTR|ERVL	24829	NM_001348368	5271		NM_002640	ENSG00000166401	SERPINB8	C18orf53|CAP2|PI-8|PI8|PSS5	serpin family B member 8	protein-coding
24562	chr1	244914151	244914780	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-49922	NM_031844	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
111836	chr19	4555221	4555480	+	0	NA	intron (NM_032108, intron 7 of 16)	intron (NM_032108, intron 7 of 16)	4334	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
4696	chr1	23102221	23102630	+	0	NA	intron (NM_033631, intron 3 of 4)	intron (NM_033631, intron 3 of 4)	58120	NR_036057	100422866		NR_036057	ENSG00000263793	MIR3115	mir-3115	microRNA 3115	ncRNA
28957	chr10	63234251	63234730	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluJb|SINE|Alu	34733	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
198162	chr6	94758251	94758430	+	0	NA	Intergenic	L1PA3|LINE|L1	819111	NR_047502	101927288		NR_047502	ENSG00000261366	MANEA-DT	MANEA-AS1	MANEA divergent transcript	ncRNA
65877	chr14	55101601	55102710	+	0	NA	Intergenic	L1MC4|LINE|L1	-27097	NM_001357678	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
195325	chr6	36608601	36610500	+	0	NA	Intergenic	MIRb|SINE|MIR	12962	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
50019	chr12	42482821	42483150	+	0	NA	intron (NM_153026, intron 1 of 7)	CpG	630	NM_001144881	144165		NM_153026	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle planar cell polarity protein 1	protein-coding
109943	chr19	1344651	1345150	+	0	NA	Intergenic	Intergenic	-10059	NM_001369789	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
126324	chr2	27351521	27352200	+	0	NA	intron (NM_001521, intron 1 of 19)	intron (NM_001521, intron 1 of 19)	4632	NM_001318909	2976		NM_001521	ENSG00000115207	GTF3C2	TF3C-beta|TFIIIC-BETA|TFIIIC110	general transcription factor IIIC subunit 2	protein-coding
153820	chr22	29750901	29751500	+	0	NA	intron (NM_001318129, intron 1 of 5)	intron (NM_001318129, intron 1 of 5)	15780	NM_019103	55954		NM_019103	ENSG00000100319	ZMAT5	SNRNP20|U11/U12-20K|ZC3H19	zinc finger matrin-type 5	protein-coding
217316	chr8	27408871	27409030	+	0	NA	intron (NM_173174, intron 7 of 35)	MLT1C|LTR|ERVL-MaLR	-24420	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
145181	chr20	38870251	38871180	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-55702	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
99330	chr17	49843601	49844030	+	0	NA	intron (NM_170685, intron 2 of 4)	AluSz|SINE|Alu	-2071	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
181791	chr5	50857151	50857650	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	112787	NR_104653	100287592		NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA
8416	chr1	40423421	40423880	+	0	NA	TTS (NM_001198979)	TTS (NM_001198979)	-26414	NM_001369565	65243		NM_023070	ENSG00000187801	ZFP69B	ZKSCAN23B|ZNF643|ZSCAN54B	ZFP69 zinc finger protein B	protein-coding
214369	chr7	149690951	149691250	+	0	NA	Intergenic	Intergenic	-23911	NM_001290187	84626		NM_032534	ENSG00000133619	KRBA1	-	KRAB-A domain containing 1	protein-coding
68857	chr14	91301271	91301430	+	0	NA	intron (NM_001080414, intron 20 of 29)	intron (NM_001080414, intron 20 of 29)	-47470	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
149298	chr21	28834001	28834200	+	0	NA	Intergenic	MER68|LTR|ERVL	51267	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
9039	chr1	44789751	44790700	+	0	NA	Intergenic	Intergenic	-2055	NM_153274	266675		NM_153274	ENSG00000142959	BEST4	VMD2L2	bestrophin 4	protein-coding
34851	chr11	324421	324680	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-3690	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
172153	chr4	1210251	1211080	+	0	NA	TTS (NM_001377190)	TTS (NM_001377190)	545	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
25977	chr10	11757721	11758380	+	0	NA	intron (NM_024693, intron 4 of 4)	intron (NM_024693, intron 4 of 4)	15668	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
212737	chr7	129902951	129904280	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	49345	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
51681	chr12	53093771	53093930	+	0	NA	Intergenic	Intergenic	-3817	NM_002178	3489		NM_002178	ENSG00000167779	IGFBP6	IBP6	insulin like growth factor binding protein 6	protein-coding
55689	chr12	107607321	107607900	+	0	NA	intron (NM_001347944, intron 4 of 14)	intron (NM_001347944, intron 4 of 14)	26736	NM_001017523	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
101301	chr17	66449671	66449830	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-32896	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
49384	chr12	22422371	22422530	+	0	NA	Intergenic	L1PA13|LINE|L1	-87736	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
194429	chr6	33115321	33116150	+	0	NA	intron (NR_001435, intron 1 of 4)	intron (NR_001435, intron 1 of 4)	3219	NR_001435	3116		NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo
112105	chr19	5581651	5581950	+	0	NA	Intergenic	AluJr|SINE|Alu	-13766	NR_027064								
213553	chr7	139108151	139108700	+	0	NA	intron (NM_020119, intron 1 of 12)	CpG	1295	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
167931	chr3	136182251	136182880	+	0	NA	intron (NM_018133, intron 1 of 1)	L1MEc|LINE|L1	11903	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
238033	chrX	135186001	135186300	+	0	NA	Intergenic	Intergenic	-14323	NM_017863	54967		NM_017863	ENSG00000169551	CT55	BJHCC20A|CXorf48|SPGFX7	cancer/testis antigen 55	protein-coding
210867	chr7	101137951	101138900	+	0	NA	3' UTR (NM_000602, exon 9 of 9)	3' UTR (NM_000602, exon 9 of 9)	11321	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
34158	chr10	128069101	128069780	+	0	NA	intron (NM_001323354, intron 11 of 19)	intron (NM_001323354, intron 11 of 19)	-7015	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
207887	chr7	50399771	50400400	+	0	NA	exon (NM_001291842, exon 5 of 5)	exon (NM_001291842, exon 5 of 5)	50265	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
181460	chr5	41901351	41901980	+	0	NA	Intergenic	Intergenic	-2679	NM_175921	285636		NM_175921	ENSG00000205765	RIMOC1	C5orf51	RAB7A interacting MON1-CCZ1 complex subunit 1	protein-coding
137889	chr2	200851901	200852800	+	0	NA	TTS (NM_004071)	TTS (NM_004071)	12211	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
155180	chr22	37750521	37750980	+	0	NA	intron (NM_138632, intron 1 of 7)	intron (NM_138632, intron 1 of 7)	4516	NM_138632	11078		NM_007032	ENSG00000100106	TRIOBP	DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
101034	chr17	64790321	64791400	+	0	NA	intron (NR_024386, intron 8 of 10)	intron (NR_024386, intron 8 of 10)	-8861	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
233782	chrX	1433871	1434600	+	0	NA	intron (NM_001173473, intron 5 of 12).2	AluJo|SINE|Alu	18674	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
143821	chr20	32481451	32482050	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	1740	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
103612	chr17	78729401	78729800	+	0	NA	intron (NM_017456, intron 1 of 12)	L1ME4b|LINE|L1	-5850	NM_001292018	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
3056	chr1	12164271	12164430	+	0	NA	Intergenic	LTR78|LTR|ERV1	-2593	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
236672	chrX	76428201	76429030	+	0	NA	exon (NM_020932, exon 1 of 1)	exon (NM_020932, exon 1 of 1)	905	NM_020932	57692		NM_020932	ENSG00000198934	MAGEE1	DAMAGE|HCA1	MAGE family member E1	protein-coding
171128	chr3	195537701	195538500	+	0	NA	intron (NM_006241, intron 1 of 5)	intron (NM_006241, intron 1 of 5)	5225	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
100298	chr17	59782851	59783450	+	0	NA	intron (NM_030938, intron 7 of 11)	AluY|SINE|Alu	-58116	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
160632	chr3	31543471	31543900	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	10760	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
7882	chr1	36457771	36458330	+	0	NA	intron (NM_031280, intron 5 of 7)	intron (NM_031280, intron 5 of 7)	6334	NM_031280	64960		NM_031280	ENSG00000116898	MRPS15	DC37|MPR-S15|RPMS15|S15mt|uS15m	mitochondrial ribosomal protein S15	protein-coding
5734	chr1	26430471	26430630	+	0	NA	TTS (NM_024674)	TTS (NM_024674)	-1732	NM_001319959	79947		NM_024887	ENSG00000117682	DHDDS	CIT|CPT|DEDSM|DS|HDS|RP59|hCIT	dehydrodolichyl diphosphate synthase subunit	protein-coding
226349	chr9	69761951	69762480	+	0	NA	Intergenic	AluSq|SINE|Alu	-2204	NM_001099666	375743		NM_001099666	ENSG00000188647	PTAR1	-	protein prenyltransferase alpha subunit repeat containing 1	protein-coding
127479	chr2	42235001	42235400	+	0	NA	intron (NM_019063, intron 1 of 22)	AluSq2|SINE|Alu	-64969	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
131239	chr2	95729051	95729150	+	0	NA	Intergenic	Intergenic	97881	NR_103734	150759		NM_175853		LINC00342	NCRNA00342	long intergenic non-protein coding RNA 342	ncRNA
201237	chr6	143841751	143842050	+	0	NA	Intergenic	MIR|SINE|MIR	-1373	NM_001329953	84946		NM_032860	ENSG00000135521	LTV1	C6orf93|IPHAK|dJ468K18.4	LTV1 ribosome biogenesis factor	protein-coding
8542	chr1	41025321	41025580	+	0	NA	intron (NR_037868, intron 1 of 3)	intron (NR_037868, intron 1 of 3)	-3695	NM_001168247	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
129677	chr2	70300851	70302480	+	0	NA	exon (NM_001329752, exon 1 of 3)	exon (NM_001329752, exon 1 of 3)	402	NM_032822	84908		NM_032822	ENSG00000035141	FAM136A	-	family with sequence similarity 136 member A	protein-coding
5506	chr1	25768321	25768980	+	0	NA	intron (NM_001385185, intron 6 of 10)	(CA)n|Simple_repeat|Simple_repeat	-31543	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
43404	chr11	77147351	77148430	+	0	NA	exon (NM_000260, exon 4 of 49)	exon (NM_000260, exon 4 of 49)	19644	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
11340	chr1	89581201	89581400	+	0	NA	intron (NM_001369819, intron 5 of 6)	intron (NM_001369819, intron 5 of 6)	51594	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
77284	chr15	82221651	82221750	+	0	NA	intron (NR_136410, intron 12 of 19)	intron (NR_136410, intron 12 of 19)	40828	NM_001322845	79631		NM_024580	ENSG00000140598	EFL1	EFTUD1|FAM42A|HsT19294|RIA1|SDS2	elongation factor like GTPase 1	protein-coding
209342	chr7	76258671	76258830	+	0	NA	intron (NM_001291831, intron 3 of 15)	intron (NM_001291831, intron 3 of 15)	-43923	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
80558	chr16	2838851	2839680	+	0	NA	TTS (NR_026864)	TTS (NR_026864)	3486	NR_026864	124221		NM_178453	ENSG00000291300	PRSS30P	Disp|TMPRSS8|TMPRSS8P	serine protease 30, pseudogene	pseudo
89647	chr16	89343551	89344050	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	23348	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
169526	chr3	170145301	170145900	+	0	NA	intron (NM_001308116, intron 5 of 14)	intron (NM_001308116, intron 5 of 14)	36133	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
73966	chr15	51838771	51838930	+	0	NA	intron (NM_014547, intron 1 of 9)	intron (NM_014547, intron 1 of 9)	9197	NM_014547	29766		NM_014547	ENSG00000138594	TMOD3	UTMOD	tropomodulin 3	protein-coding
39535	chr11	61103101	61104300	+	0	NA	intron (NM_014207, intron 1 of 10)	(GT)n|Simple_repeat|Simple_repeat	1211	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
62761	chr13	108212821	108213380	+	0	NA	intron (NM_001098268, intron 1 of 1)	intron (NM_001098268, intron 1 of 1)	1682	NM_002312	3981		NM_002312	ENSG00000174405	LIG4	LIG4S	DNA ligase 4	protein-coding
124715	chr2	3606771	3606930	+	0	NA	intron (NM_001255989, intron 1 of 3)	intron (NM_001255989, intron 1 of 3)	798	NM_001255986	78989		NM_024027	ENSG00000118004	COLEC11	3MC2|CL-11|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
21324	chr1	204522271	204522800	+	0	NA	intron (NM_001204172, intron 1 of 2)	AluSc|SINE|Alu	6129	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
72611	chr15	37100051	37100610	+	0	NA	promoter-TSS (NM_172316)	promoter-TSS (NM_172316)	219	NM_170674	4212		NM_002399	ENSG00000134138	MEIS2	CPCMR|HsT18361|MRG1	Meis homeobox 2	protein-coding
141023	chr2	238172821	238173080	+	0	NA	intron (NM_030768, intron 10 of 11)	intron (NM_030768, intron 10 of 11)	13980	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
64429	chr14	24192401	24193150	+	0	NA	exon (NM_006405, exon 3 of 6)	exon (NM_006405, exon 3 of 6)	2666	NM_006405	10548		NM_006405	ENSG00000100926	TM9SF1	HMP70|MP70	transmembrane 9 superfamily member 1	protein-coding
164381	chr3	58260501	58260700	+	0	NA	intron (NM_020676, intron 2 of 8)	intron (NM_020676, intron 2 of 8)	22808	NM_001320126	57406		NM_020676	ENSG00000163686	ABHD6	-	abhydrolase domain containing 6, acylglycerol lipase	protein-coding
46655	chr11	128703151	128703900	+	0	NA	intron (NM_001271010, intron 1 of 9)	L1ME4b|LINE|L1	-7502	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
221316	chr8	123039351	123039950	+	0	NA	intron (NM_024295, intron 1 of 7)	L2a|LINE|L2	2652	NM_024295	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
178280	chr4	144645771	144646300	+	0	NA	promoter-TSS (NM_022475)	promoter-TSS (NM_022475)	-16	NR_037595	646576		NR_037595	ENSG00000248890	HHIP-AS1	HHAS1	HHIP antisense RNA 1	ncRNA
203167	chr6	167092621	167093080	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-18957	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
133169	chr2	112766151	112766450	+	0	NA	Intergenic	Intergenic	-1691	NR_130712	150468		NM_152515	ENSG00000169607	CKAP2L	-	cytoskeleton associated protein 2 like	protein-coding
44083	chr11	95691071	95691680	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	98407	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
101850	chr17	74198371	74198900	+	0	NA	Intergenic	Intergenic	-5043	NM_000999	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
59980	chr13	32309721	32310600	+	0	NA	intron (NM_001136571, intron 4 of 5)	intron (NM_001136571, intron 4 of 5)	5203	NM_001136571	646799		NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1 like	protein-coding
161634	chr3	43295621	43296000	+	0	NA	intron (NM_001330750, intron 1 of 4)	AluSz|SINE|Alu	9270	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
56613	chr12	118142421	118142880	+	0	NA	intron (NM_002567, intron 3 of 3)	AluSz|SINE|Alu	6526	NM_002567	5037		NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding
12462	chr1	107835001	107835400	+	0	NA	intron (NM_006113, intron 2 of 26)	L1PA16|LINE|L1	-62023	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
23189	chr1	226955551	226955850	+	0	NA	intron (NM_020247, intron 1 of 14)	intron (NM_020247, intron 1 of 14)	15406	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
231998	chr9	133349751	133350700	+	0	NA	promoter-TSS (NR_002448)	promoter-TSS (NR_002448)	131	NR_000017	26814		NR_000017	ENSG00000200831	SNORD36B	RNU36B|U36b	small nucleolar RNA, C/D box 36B	snoRNA
200939	chr6	139165451	139165550	+	0	NA	intron (NM_016217, intron 1 of 3)	L1MC1|LINE|L1	30420	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
130937	chr2	87497951	87498780	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	28415	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
107354	chr18	45910371	45910750	+	0	NA	exon (NM_020964, exon 23 of 44)	exon (NM_020964, exon 23 of 44)	56769	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
195416	chr6	36876401	36876600	+	0	NA	intron (NM_001286636, intron 1 of 9)	AluSq2|SINE|Alu	-1697	NM_016059	51645		NM_016059	ENSG00000137168	PPIL1	CGI-124|CYPL1|PCH14|PPIase|hCyPX	peptidylprolyl isomerase like 1	protein-coding
7968	chr1	37793521	37794480	+	0	NA	promoter-TSS (NM_001031740)	promoter-TSS (NM_001031740)	-102	NM_001113482	149175		NM_152496	ENSG00000185090	MANEAL	-	mannosidase endo-alpha like	protein-coding
62296	chr13	98993421	98993680	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	-15486	NM_001130050	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
44276	chr11	102292601	102292800	+	0	NA	Intergenic	Intergenic	-24784	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
45249	chr11	117989351	117990480	+	0	NA	intron (NM_001558, intron 3 of 6)	intron (NM_001558, intron 3 of 6)	3521	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
41241	chr11	65783651	65783750	+	0	NA	Intergenic	AluY|SINE|Alu	-2724	NM_138368	91056		NM_138368	ENSG00000254470	AP5B1	AP-5|PP1030	adaptor related protein complex 5 subunit beta 1	protein-coding
171210	chr3	195746151	195746600	+	0	NA	TTS (NM_138297).2	TTS (NM_138297).2	25397	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
233586	chrX	311771	311930	+	0	NA	intron (NM_012227, intron 6 of 9)	CpG-29363	6969	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
149032	chr21	14629971	14630850	+	0	NA	intron (NM_001256579, intron 1 of 6)	intron (NM_001256579, intron 1 of 6)	12697	NM_001256579	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
228386	chr9	99123071	99123830	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	18337	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
161733	chr3	44232501	44232730	+	0	NA	Intergenic	Intergenic	-9271	NM_001145030	375337		NM_001145030	ENSG00000173769	TOPAZ1	C3orf77	testis and ovary specific TOPAZ 1	protein-coding
81544	chr16	9109071	9110030	+	0	NA	intron (NM_014117, intron 3 of 3)	MIR3|SINE|MIR	17906	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
139173	chr2	219203471	219203630	+	0	NA	Intergenic	L5|LINE|RTE-X	-3232	NM_138802	130617		NM_138802	ENSG00000158552	ZFAND2B	AIRAPL	zinc finger AN1-type containing 2B	protein-coding
61868	chr13	77024951	77026000	+	0	NA	intron (NM_012158, intron 1 of 4)	AluJb|SINE|Alu	1684	NM_012158	26224		NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A|IDDSFAS	F-box and leucine rich repeat protein 3	protein-coding
111479	chr19	3955021	3955400	+	0	NA	Intergenic	AluSx1|SINE|Alu	6302	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
76628	chr15	75575651	75575750	+	0	NA	intron (NM_002833, intron 1 of 12)	AluY|SINE|Alu	3615	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
79069	chr16	161151	161250	+	0	NA	Intergenic	Intergenic	-4778	NM_001003938	3042		NM_001003938	ENSG00000206177	HBM	HBAP2|HBK	hemoglobin subunit mu	protein-coding
178001	chr4	139299671	139299830	+	0	NA	intron (NM_001184989, intron 1 of 5)	intron (NM_001184989, intron 1 of 5)	1460	NM_001184991	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
131148	chr2	91515971	91516780	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	143574	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
146445	chr20	49675171	49675820	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	38383	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
40983	chr11	65385201	65386000	+	0	NA	Intergenic	Intergenic	-1037	NM_001300832	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
178334	chr4	145807121	145807580	+	0	NA	intron (NM_178835, intron 8 of 14)	L1ME4a|LINE|L1	127204	NM_001080531	646603		NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
142058	chr20	2005851	2006180	+	0	NA	intron (NR_134520, intron 3 of 3)	intron (NR_134520, intron 3 of 3)	-11730	NM_001190899	5173		NM_024411	ENSG00000101327	PDYN	ADCA|PENKB|SCA23	prodynorphin	protein-coding
19767	chr1	182084551	182085550	+	0	NA	Intergenic	Intergenic	-23338	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
119121	chr19	39348101	39348300	+	0	NA	intron (NM_001303614, intron 1 of 12)	L2b|LINE|L2	5779	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
187993	chr5	149528301	149528500	+	0	NA	intron (NM_001892, intron 2 of 9)	intron (NM_001892, intron 2 of 9)	21965	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
163012	chr3	49791001	49791200	+	0	NA	intron (NM_001007540, intron 18 of 18)	intron (NM_001007540, intron 18 of 18)	-4558	NM_153273	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
61161	chr13	48980071	48980600	+	0	NA	intron (NM_001278438, intron 1 of 25)	intron (NM_001278438, intron 1 of 25)	3673	NR_103528	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
65169	chr14	49588671	49588930	+	0	NA	intron (NM_001351375, intron 1 of 2)	AluSz|SINE|Alu	2220	NR_002715	6029		NR_002715	ENSG00000276168	RN7SL1	7L1a|7SL|RN7SL|RNSRP1	RNA component of signal recognition particle 7SL1	scRNA
32956	chr10	110431951	110432250	+	0	NA	Intergenic	L2b|LINE|L2	-65807	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
3650	chr1	16400171	16401000	+	0	NA	non-coding (NR_148413, exon 13 of 16)	non-coding (NR_148413, exon 13 of 16)	33343	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
81052	chr16	4319271	4319950	+	0	NA	intron (NM_032575, intron 1 of 6).2	intron (NM_032575, intron 1 of 6).2	3543	NM_032575	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
174611	chr4	40285071	40285230	+	0	NA	Intergenic	Intergenic	-22035	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
196088	chr6	42313451	42313550	+	0	NA	intron (NM_033502, intron 3 of 17)	intron (NM_033502, intron 3 of 17)	-95639	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
73282	chr15	41857321	41857580	+	0	NA	exon (NM_016642, exon 51 of 68)	exon (NM_016642, exon 51 of 68)	9101	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
169722	chr3	172145421	172145880	+	0	NA	intron (NM_022763, intron 3 of 25)	MER47C|DNA|TcMar-Tigger	105119	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
188358	chr5	151755551	151755850	+	0	NA	intron (NM_004045, intron 1 of 3)	intron (NM_004045, intron 1 of 3)	2931	NM_004045	475		NM_004045	ENSG00000177556	ATOX1	ATX1|HAH1	antioxidant 1 copper chaperone	protein-coding
100032	chr17	57996501	57997080	+	0	NA	Intergenic	Intergenic	-8536	NM_007146	7716		NM_007146	ENSG00000136451	VEZF1	CMD1OO|DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
47402	chr12	2867601	2868480	+	0	NA	intron (NM_202002, intron 4 of 9)	intron (NM_202002, intron 4 of 9)	-8225	NR_046433	83695		NM_001252499	ENSG00000171792	RHNO1	C12orf32|HKMT1188|RHINO	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding
171037	chr3	195184801	195185000	+	0	NA	intron (NM_001308069, intron 2 of 3)	intron (NM_001308069, intron 2 of 3)	37029	NR_102711	101410543		NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
215776	chr8	2129901	2130430	+	0	NA	intron (NM_003970, intron 32 of 36).2	CpG	53576	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
106692	chr18	23306751	23307340	+	0	NA	intron (NR_148385, intron 13 of 13)	intron (NR_148385, intron 13 of 13)	130916	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
193933	chr6	31649571	31649930	+	0	NA	intron (NM_080702, intron 2 of 24).6	intron (NM_080702, intron 2 of 24).6	2640	NM_001098534	7917		NM_004639	ENSG00000204463	BAG6	BAG-6|BAT3|D6S52E|G3	BAG cochaperone 6	protein-coding
166238	chr3	112137001	112137750	+	0	NA	Intergenic	MamGypsy2-LTR|LTR|Gypsy	3952	NR_157393	112806053		NR_157393	ENSG00000261488	TBILA	-	TGF-beta induced lncRNA	ncRNA
137253	chr2	192162421	192162700	+	0	NA	intron (NM_001305134, intron 4 of 9)	intron (NM_001305134, intron 4 of 9)	32373	NM_016192	23671		NM_016192	ENSG00000144339	TMEFF2	CT120.2|HPP1|TENB2|TPEF|TR|TR-2	transmembrane protein with EGF like and two follistatin like domains 2	protein-coding
121286	chr19	46722001	46722300	+	0	NA	intron (NM_001039877, intron 15 of 17)	intron (NM_001039877, intron 15 of 17)	-5023	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
4400	chr1	21084271	21084430	+	0	NA	intron (NM_003760, intron 1 of 31)	THE1D|LTR|ERVL-MaLR	27033	NM_003760	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
188671	chr5	157263151	157263450	+	0	NA	Intergenic	L2b|LINE|L2	-2823	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
200751	chr6	137804671	137805030	+	0	NA	Intergenic	Intergenic	-62409	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
127497	chr2	42270321	42270580	+	0	NA	intron (NM_019063, intron 6 of 22)	AluJo|SINE|Alu	89588	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
13046	chr1	111320421	111320880	+	0	NA	TTS (NM_001258005)	TTS (NM_001258005)	-25910	NR_125338	128344		NM_181643	ENSG00000173947	CIMAP3	C1orf88|PIFO|pitchfork	ciliary microtubule associated protein 3	protein-coding
20573	chr1	198734321	198734930	+	0	NA	intron (NM_002838, intron 22 of 32)	intron (NM_002838, intron 22 of 32)	95585	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
92223	chr17	7881951	7882500	+	0	NA	intron (NM_001330111, intron 2 of 4)	intron (NM_001330111, intron 2 of 4)	-2571	NM_001005271	1107		NM_001272	ENSG00000170004	CHD3	Mi-2a|Mi2-ALPHA|SNIBCPS|ZFH	chromodomain helicase DNA binding protein 3	protein-coding
230278	chr9	127925671	127926030	+	0	NA	intron (NM_173492, intron 3 of 4)	intron (NM_173492, intron 3 of 4)	1641	NM_173492	138429		NM_173492	ENSG00000167103	PIP5KL1	PIPKH	phosphatidylinositol-4-phosphate 5-kinase like 1	protein-coding
213085	chr7	131098871	131099530	+	0	NA	intron (NR_109852, intron 2 of 5)	FLAM_C|SINE|Alu	7830	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
128216	chr2	54013971	54014600	+	0	NA	intron (NM_001320587, intron 2 of 5)	intron (NM_001320587, intron 2 of 5)	43172	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
94762	chr17	30819971	30820430	+	0	NA	intron (NM_015986, intron 1 of 7)	intron (NM_015986, intron 1 of 7)	4492	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
21968	chr1	208652451	208652550	+	0	NA	Intergenic	Intergenic	-76188	NR_146914	105372893		NR_146914	ENSG00000232812	LINC01717	-	long intergenic non-protein coding RNA 1717	ncRNA
15640	chr1	150696551	150697650	+	0	NA	promoter-TSS (NM_018178)	promoter-TSS (NM_018178)	54	NM_018178	55204		NM_018178	ENSG00000143457	GOLPH3L	GPP34R	golgi phosphoprotein 3 like	protein-coding
97020	chr17	42303321	42303830	+	0	NA	intron (NM_001288719, intron 8 of 17)	AluSp|SINE|Alu	15519	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
129699	chr2	70647851	70648180	+	0	NA	Intergenic	Intergenic	-94189	NM_003236	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
79603	chr16	1068251	1068350	+	0	NA	intron (NR_027242, intron 2 of 3)	intron (NR_027242, intron 2 of 3)	-4456	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
17752	chr1	159011171	159011550	+	0	NA	intron (NM_001376587, intron 1 of 11)	AluSz|SINE|Alu	1453	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
207702	chr7	45922201	45922580	+	0	NA	Intergenic	Intergenic	-1118	NM_000598	3486		NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP-3|IBP3|IGFBP-3	insulin like growth factor binding protein 3	protein-coding
148244	chr20	63640931	63643130	+	0	NA	intron (NM_001276310, intron 4 of 4)	CpG	10736	NM_001276310	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
116820	chr19	18559601	18559900	+	0	NA	intron (NM_001171949, intron 1 of 4)	MIR|SINE|MIR	1880	NM_024069	79036		NM_024069	ENSG00000105700	KXD1	BORCS4|C10orf50|C19orf50|KXDL|MST096|MSTP096	KxDL motif containing 1	protein-coding
63231	chr13	113917851	113918150	+	0	NA	intron (NR_164112, intron 5 of 7)	MLT1I|LTR|ERVL-MaLR	10991	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
80445	chr16	2660571	2661250	+	0	NA	non-coding (NR_040023, exon 3 of 3)	non-coding (NR_040023, exon 3 of 3)	12529	NR_040023	100507321		NM_001012731		ERVK13-1	-	endogenous retrovirus group K13 member 1	ncRNA
103809	chr17	79088651	79089300	+	0	NA	TTS (NM_001350451)	TTS (NM_001350451)	14151	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
161116	chr3	38256301	38256700	+	0	NA	Intergenic	L1MC1|LINE|L1	-9312	NM_004256	9390		NM_004256	ENSG00000172940	SLC22A13	OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3	solute carrier family 22 member 13	protein-coding
233807	chrX	1462421	1463500	+	0	NA	3' UTR (NM_178129, exon 2 of 2)	3' UTR (NM_178129, exon 2 of 2)	-9198	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
217425	chr8	28401601	28403130	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-15905	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
9205	chr1	45619051	45619880	+	0	NA	TTS (NM_002482)	TTS (NM_002482)	4589	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
4090	chr1	19179701	19180600	+	0	NA	intron (NM_020765, intron 17 of 105)	intron (NM_020765, intron 17 of 105)	30116	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
224181	chr9	5350801	5351200	+	0	NA	Intergenic	Intergenic	-11124	NM_006911	6013		NM_006911	ENSG00000107018	RLN1	H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2	relaxin 1	protein-coding
141329	chr2	240560601	240562200	+	0	NA	promoter-TSS (NM_001354023)	promoter-TSS (NM_001354023)	-290	NR_148698	51281		NM_016552	ENSG00000144504	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding
55381	chr12	104323401	104323700	+	0	NA	intron (NM_001093771, intron 10 of 16)	SVA_F|Retroposon|SVA	19811	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
51389	chr12	51926521	51926980	+	0	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	14367	NM_001077401	94		NM_000020	ENSG00000139567	ACVRL1	ACVRLK1|ALK-1|ALK1|HHT|HHT2|ORW2|SKR3|TSR-I	activin A receptor like type 1	protein-coding
197365	chr6	73468951	73469650	+	0	NA	intron (NM_133645, intron 3 of 12)	AluJb|SINE|Alu	7563	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
127836	chr2	45006221	45006680	+	0	NA	exon (NM_016932, exon 2 of 2)	exon (NM_016932, exon 2 of 2)	3002	NM_016932	10736		NM_016932	ENSG00000170577	SIX2	-	SIX homeobox 2	protein-coding
168186	chr3	140953001	140953200	+	0	NA	intron (NM_018155, intron 1 of 6)	Charlie29a|DNA|hAT-Charlie	11264	NM_001104647	55186		NM_018155	ENSG00000114120	SLC25A36	HHF8|PNC2	solute carrier family 25 member 36	protein-coding
24766	chr1	248847251	248847550	+	0	NA	exon (NM_024836, exon 4 of 4)	exon (NM_024836, exon 4 of 4)	9176	NM_024836	79894		NM_024836	ENSG00000171161	ZNF672	-	zinc finger protein 672	protein-coding
33807	chr10	123157371	123157630	+	0	NA	intron (NM_004725, intron 3 of 7)	intron (NM_004725, intron 3 of 7)	3098	NM_004725	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
36583	chr11	6682751	6684100	+	0	NA	promoter-TSS (NM_022061)	promoter-TSS (NM_022061)	-85	NM_022061	63875		NM_022061	ENSG00000158042	MRPL17	L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26|bL17m	mitochondrial ribosomal protein L17	protein-coding
231966	chr9	133154771	133155130	+	0	NA	intron (NM_021996, intron 6 of 6)	intron (NM_021996, intron 6 of 6)	-5740	NM_001042368	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
202935	chr6	160467471	160467630	+	0	NA	non-coding (NR_028092, exon 10 of 10)	non-coding (NR_028092, exon 10 of 10)	43574	NR_028092	80350		NM_024492	ENSG00000290613	LPAL2	APOA2|APOAL|APOARGC|apo(a)rg-C	lipoprotein(a) like 2 (pseudogene)	pseudo
194204	chr6	32177281	32179580	+	0	NA	promoter-TSS (NM_006913).6	promoter-TSS (NM_006913).6	25	NM_006913	6048		NM_006913	ENSG00000204308	RNF5	RING5|RMA1	ring finger protein 5	protein-coding
127511	chr2	42295301	42295500	+	0	NA	exon (NM_001145076, exon 12 of 22)	exon (NM_001145076, exon 12 of 22)	64638	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
179518	chr4	184815121	184815380	+	0	NA	promoter-TSS (NM_001381879)	promoter-TSS (NM_001381879)	-126	NM_001381879	2180		NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long chain family member 1	protein-coding
108441	chr18	70086471	70086780	+	0	NA	exon (NM_001318520, exon 31 of 48)	exon (NM_001318520, exon 31 of 48)	119062	NM_001318520	25914		NM_173630	ENSG00000176225	RTTN	MSSP	rotatin	protein-coding
122442	chr19	49484921	49485380	+	0	NA	intron (NM_001278637, intron 8 of 8)	AluSq|SINE|Alu	-2404	NM_001270491	23521		NM_012423	ENSG00000142541	RPL13A	L13A|TSTA1|uL13	ribosomal protein L13a	protein-coding
37829	chr11	33165921	33166480	+	0	NA	intron (NR_034027, intron 1 of 3)	L2|LINE|L2	4543	NR_034027	338739		NR_034027	ENSG00000247151	CSTF3-DT	CSTF3-AS1	CSTF3 divergent transcript	ncRNA
6011	chr1	27036651	27036950	+	0	NA	Intergenic	Intergenic	-23950	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
53124	chr12	57833701	57834280	+	0	NA	intron (NM_005730, intron 1 of 7)	MIR|SINE|MIR	-9298	NR_029847	407016		NR_029847	ENSG00000207789	MIR26A2	MIRN26A2|mir-26a-2	microRNA 26a-2	ncRNA
115623	chr19	16086071	16087030	+	0	NA	intron (NM_001367837, intron 3 of 7)	intron (NM_001367837, intron 3 of 7)	9534	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
26665	chr10	22608271	22609180	+	0	NA	intron (NM_001330062, intron 2 of 9)	AluJr|SINE|Alu	105383	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
101782	chr17	73191301	73192000	+	0	NA	Intergenic	Intergenic	-1405	NM_018714	9382		NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
233034	chr9	137040801	137041000	+	0	NA	exon (NM_015392, exon 4 of 9)	exon (NM_015392, exon 4 of 9)	5277	NM_015392	56654		NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
68658	chr14	90060271	90061100	+	0	NA	Intergenic	CpG	-1309	NM_022054	56659		NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	potassium two pore domain channel subfamily K member 13	protein-coding
121663	chr19	47495601	47496300	+	0	NA	intron (NR_038457, intron 1 of 8)	intron (NR_038457, intron 1 of 8)	11668	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
48749	chr12	10749921	10750630	+	0	NA	promoter-TSS (NR_120463)	promoter-TSS (NR_120463)	41	NR_120463	101928162		NR_120463	ENSG00000256888	LINC02366	-	long intergenic non-protein coding RNA 2366	ncRNA
169895	chr3	177597321	177598300	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	155889	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
120566	chr19	44989151	44990100	+	0	NA	intron (NM_001282175, intron 9 of 13)	intron (NM_001282175, intron 9 of 13)	-11839	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
175925	chr4	80268021	80268580	+	0	NA	promoter-TSS (NM_001291812)	promoter-TSS (NM_001291812)	35	NM_001291812	2250		NM_004464	ENSG00000138675	FGF5	HBGF-5|Smag-82|TCMGLY	fibroblast growth factor 5	protein-coding
218554	chr8	54103951	54104050	+	0	NA	Intergenic	MER41A|LTR|ERV1	-1983	NM_001279356	10434		NM_006330	ENSG00000120992	LYPLA1	APT-1|APT1|LPL-I|LPL1|hAPT1	lysophospholipase 1	protein-coding
228501	chr9	100098481	100099800	+	0	NA	promoter-TSS (NM_001318382)	promoter-TSS (NM_001318382)	-45	NR_134606	27130		NM_014425	ENSG00000119509	INVS	INV|NPH2|NPHP2	inversin	protein-coding
233301	chr9	137329511	137330300	+	0	NA	intron (NM_017820, intron 17 of 21)	(TACACGGGAC)n|Simple_repeat|Simple_repeat	-27634	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
135671	chr2	168537201	168537400	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	-45643	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA
202502	chr6	158475371	158475730	+	0	NA	intron (NM_001007466, intron 6 of 12)	intron (NM_001007466, intron 6 of 12)	-61090	NM_020823	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
57304	chr12	121660031	121661200	+	0	NA	intron (NM_173855, intron 1 of 5)	AluSx1|SINE|Alu	9039	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
14406	chr1	144276001	144277100	+	0	NA	TTS (NR_136328)	TTS (NR_136328)	212	NR_111000	101060524		NR_111000		LOC101060524	-	D(1B) dopamine receptor-like	pseudo
162385	chr3	48087151	48088200	+	0	NA	intron (NM_001384729, intron 1 of 20)	intron (NM_001384729, intron 1 of 20)	1173	NM_001384861	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
26690	chr10	22635001	22635350	+	0	NA	intron (NM_005028, intron 1 of 9)	L1MC1|LINE|L1	78933	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
4344	chr1	20632851	20633600	+	0	NA	promoter-TSS (NR_106732)	promoter-TSS (NR_106732)	-233	NM_032409	65018		NM_032409	ENSG00000158828	PINK1	BRPK|PARK6	PTEN induced kinase 1	protein-coding
71717	chr15	20348951	20349250	+	0	NA	Intergenic	Intergenic	66356	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
122711	chr19	49939121	49939580	+	0	NA	Intergenic	AluSz6|SINE|Alu	6286	NR_039906	100616483		NR_039906	ENSG00000283842	MIR4751	-	microRNA 4751	ncRNA
164506	chr3	62318801	62319480	+	0	NA	promoter-TSS (NR_038281)	promoter-TSS (NR_038281)	118	NM_001291942	57415		NM_020685	ENSG00000114405	CEP15	C3orf14|HT021	centrosomal protein 15	protein-coding
108712	chr18	77077151	77077450	+	0	NA	intron (NM_001025100, intron 2 of 3)	AluSq|SINE|Alu	55483	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
51187	chr12	50282621	50284150	+	0	NA	intron (NM_001113546, intron 1 of 10)	intron (NM_001113546, intron 1 of 10)	135	NM_016357	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
111446	chr19	3813651	3814750	+	0	NA	intron (NM_015174, intron 13 of 18)	intron (NM_015174, intron 13 of 18)	-12401	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
83905	chr16	28991621	28992100	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	6808	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
220189	chr8	95237251	95237500	+	0	NA	Intergenic	Intergenic	-21001	NR_046232	619344		NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
11019	chr1	84847321	84847930	+	0	NA	intron (NM_012152, intron 2 of 2)	intron (NM_012152, intron 2 of 2)	45581	NM_012152	23566		NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
15011	chr1	148246221	148246700	+	0	NA	intron (NR_120331, intron 1 of 4)	CpG	611	NR_120331	101927468		NR_120331	ENSG00000227733	LOC101927468	-	uncharacterized LOC101927468	ncRNA
160083	chr3	18781101	18781700	+	0	NA	Intergenic	Intergenic	-335808	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
18163	chr1	160782021	160782600	+	0	NA	Intergenic	Intergenic	-13864	NM_002348	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
89141	chr16	88517321	88517580	+	0	NA	intron (NM_153813, intron 4 of 9)	(GGTG)n|Simple_repeat|Simple_repeat	13603	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
62485	chr13	99399171	99399730	+	0	NA	Intergenic	Intergenic	43319	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
197607	chr6	81751651	81753100	+	0	NA	intron (NM_017633, intron 1 of 2)	CpG-23786	306	NM_017633	55603		NM_017633	ENSG00000112773	TENT5A	C6orf37|FAM46A|OI18|XTP11	terminal nucleotidyltransferase 5A	protein-coding
172615	chr4	2511371	2512950	+	0	NA	intron (NM_001185010, intron 5 of 6)	intron (NM_001185010, intron 5 of 6)	-23215	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
112282	chr19	5823421	5823880	+	0	NA	intron (NM_004558, intron 1 of 2)	intron (NM_004558, intron 1 of 2)	15142	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
46722	chr11	128884751	128885130	+	0	NA	Intergenic	Intergenic	-6416	NM_001354169	3762		NM_000890	ENSG00000120457	KCNJ5	CIR|GIRK4|KATP1|KIR3.4|LQT13	potassium inwardly rectifying channel subfamily J member 5	protein-coding
21094	chr1	203330471	203330830	+	0	NA	Intergenic	AluJo|SINE|Alu	20472	NR_103757	2331		NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding
227206	chr9	88313401	88313800	+	0	NA	Intergenic	MER34A1|LTR|ERV1	-74844	NM_006717	10927		NM_006717	ENSG00000106723	SPIN1	SPIN|TDRD24	spindlin 1	protein-coding
171804	chr4	576101	576550	+	0	NA	promoter-TSS (NR_148199)	promoter-TSS (NR_148199)	-30	NM_001362796	112441426		NM_001362796	ENSG00000273238	TMEM271	-	transmembrane protein 271	protein-coding
210848	chr7	101085071	101086450	+	0	NA	intron (NM_030961, intron 1 of 2)	intron (NM_030961, intron 1 of 2)	279	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
112913	chr19	7647021	7648300	+	0	NA	intron (NM_006949, intron 18 of 18)	intron (NM_006949, intron 18 of 18)	10550	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
238682	chrX	154054171	154054630	+	0	NA	intron (NM_001369393, intron 1 of 3)	AluSq2|SINE|Alu	-34411	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
121764	chr19	47759801	47760550	+	0	NA	intron (NR_132382, intron 2 of 2)	AluSq|SINE|Alu	4322	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
152993	chr22	23156871	23157050	+	0	NA	intron (NM_004914, intron 6 of 10)	intron (NM_004914, intron 6 of 10)	11483	NR_146295	9609		NM_004914	ENSG00000100228	RAB36	-	RAB36, member RAS oncogene family	protein-coding
115724	chr19	16247471	16248680	+	0	NA	Intergenic	AluSx1|SINE|Alu	50164	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
38507	chr11	45884351	45884450	+	0	NA	Intergenic	Intergenic	-1251	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
69564	chr14	96803971	96804150	+	0	NA	intron (NM_003384, intron 1 of 12)	L1MB5|LINE|L1	6678	NM_003384	7443		NM_003384	ENSG00000100749	VRK1	HMNR10|PCH1|PCH1A	VRK serine/threonine kinase 1	protein-coding
133237	chr2	113227671	113228030	+	0	NA	intron (NM_013953, intron 7 of 9)	intron (NM_013953, intron 7 of 9)	-7677	NR_047570	654433		NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
17272	chr1	156415371	156415730	+	0	NA	intron (NR_135260, intron 2 of 3)	intron (NR_135260, intron 2 of 3)	4879	NR_029691	407046		NR_029691	ENSG00000207933	MIR9-1	MIRN9-1|hsa-mir-9-1|miRNA9-1|mir-9-1	microRNA 9-1	ncRNA
177300	chr4	109628371	109629130	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	68504	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
203239	chr6	168909721	168910180	+	0	NA	Intergenic	CpG	54432	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
197957	chr6	89954621	89955400	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	60541	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
172488	chr4	2241401	2242950	+	0	NA	promoter-TSS (NM_001303143)	promoter-TSS (NM_001303143)	-54	NM_024511	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
64501	chr14	24334401	24336630	+	0	NA	promoter-TSS (NM_001198568)	promoter-TSS (NM_001198568)	-444	NM_001198568	196883		NM_139247	ENSG00000129467	ADCY4	AC4	adenylate cyclase 4	protein-coding
89848	chr16	89595871	89596230	+	0	NA	intron (NM_153636, intron 14 of 14)	intron (NM_153636, intron 14 of 14)	-17258	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
134757	chr2	145484471	145484630	+	0	NA	Intergenic	MARNA|DNA|TcMar-Mariner	816583	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
231612	chr9	131566171	131566330	+	0	NA	Intergenic	L1MEg|LINE|L1	20727	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
204759	chr7	5597221	5597480	+	0	NA	intron (NM_003088, intron 1 of 4)	AluJb|SINE|Alu	4534	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
199409	chr6	116572971	116573130	+	0	NA	intron (NM_016104, intron 2 of 8)	intron (NM_016104, intron 2 of 8)	1546	NM_016104	51389		NM_015952	ENSG00000111832	RWDD1	CGI-24|PTD013	RWD domain containing 1	protein-coding
170619	chr3	187012401	187013230	+	0	NA	intron (NM_173216, intron 2 of 7)	intron (NM_173216, intron 2 of 7)	-9040	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
65367	chr14	50530671	50531080	+	0	NA	intron (NM_198794, intron 2 of 31)	intron (NM_198794, intron 2 of 31)	1694	NM_006575	11183		NM_006575	ENSG00000012983	MAP4K5	GCKR|KHS|KHS1|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding
29407	chr10	70166771	70166930	+	0	NA	intron (NM_001142648, intron 1 of 7)	AluJo|SINE|Alu	3664	NM_001142648	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
194810	chr6	34243751	34244250	+	0	NA	intron (NM_145899, intron 5 of 5)	intron (NM_145899, intron 5 of 5)	3327	NR_106893	102465502		NR_106893	ENSG00000276404	MIR6835	hsa-mir-6835	microRNA 6835	ncRNA
72040	chr15	28710401	28711200	+	0	NA	intron (NM_001282468, intron 1 of 18).3	intron (NM_001282468, intron 1 of 18).3	1621	NM_001282468	653720		NM_001282468	ENSG00000188626	GOLGA8M	-	golgin A8 family member M	protein-coding
37595	chr11	19675051	19675150	+	0	NA	intron (NM_001111018, intron 2 of 38)	intron (NM_001111018, intron 2 of 38)	-37737	NM_001244963	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
229018	chr9	113740051	113741400	+	0	NA	Intergenic	Intergenic	-135557	NM_001318040	114991		NM_133374	ENSG00000157657	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
41958	chr11	67321371	67321530	+	0	NA	intron (NR_024469, intron 2 of 3)	intron (NR_024469, intron 2 of 3)	3611	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
92706	chr17	14189771	14190130	+	0	NA	intron (NM_001303, intron 5 of 6)	intron (NM_001303, intron 5 of 6)	46912	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
76446	chr15	74808901	74809300	+	0	NA	Intergenic	L2c|LINE|L2	-3735	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
77243	chr15	81300821	81301080	+	0	NA	intron (NM_172217, intron 14 of 18)	MIR3|SINE|MIR	3980	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
129970	chr2	73984111	73986000	+	0	NA	5' UTR (NM_001287491, exon 1 of 12)	5' UTR (NM_001287491, exon 1 of 12)	145	NM_001287491	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
67047	chr14	67672751	67673080	+	0	NA	intron (NM_006370, intron 1 of 5)	L2a|LINE|L2	1717	NM_006370	10490		NM_006370	ENSG00000100568	VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
50340	chr12	47085001	47086430	+	0	NA	intron (NM_138371, intron 1 of 3)	intron (NM_138371, intron 1 of 3)	-5756	NM_001370299	347902		NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
105175	chr17	82274651	82274850	+	0	NA	promoter-TSS (NR_110578)	promoter-TSS (NR_110578)	-1000	NR_110578	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
223728	chr8	144472021	144473200	+	0	NA	TTS (NM_003923)	TTS (NM_003923)	3239	NM_003923	8928		NM_003923	ENSG00000160973	FOXH1	FAST-1|FAST1	forkhead box H1	protein-coding
156477	chr22	41264401	41265000	+	0	NA	exon (NM_001317930, exon 5 of 16)	exon (NM_001317930, exon 5 of 16)	-11650	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
22348	chr1	214605651	214606150	+	0	NA	intron (NM_016343, intron 1 of 19)	CpG	2705	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
86511	chr16	67104071	67104500	+	0	NA	Intergenic	L2c|LINE|L2	-5656	NM_001320542	80262		NM_025187	ENSG00000125149	PHAF1	C16orf6|C16orf70|LIN10|MYTHO|lin-10	phagosome assembly factor 1	protein-coding
37560	chr11	18727201	18729150	+	0	NA	3' UTR (NM_006906, exon 15 of 15)	3' UTR (NM_006906, exon 15 of 15)	-1987	NR_160413	283284		NM_173588	ENSG00000179057	IGSF22	IGFN2	immunoglobulin superfamily member 22	protein-coding
153419	chr22	24986721	24987180	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-40255	NM_001001663	255349		NM_001001663	ENSG00000206069	LHFPL7	TMEM211|bA9F11.1	LHFPL tetraspan subfamily member 7	protein-coding
113499	chr19	10091921	10092930	+	0	NA	TTS (NM_001321411)	TTS (NM_001321411)	6108	NM_001308277	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
97365	chr17	43311201	43311600	+	0	NA	Intergenic	AluY|SINE|Alu	-11169	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
190233	chr5	178279951	178280330	+	0	NA	intron (NM_173465, intron 5 of 28)	intron (NM_173465, intron 5 of 28)	-47318	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
204931	chr7	6240321	6242650	+	0	NA	intron (NM_004227, intron 1 of 12)	L1MC5a|LINE|L1	31139	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
46214	chr11	123660021	123660450	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-5611	NM_001040151	55800		NM_018400	ENSG00000166257	SCN3B	ATFB16|BRGDA7|HSA243396|SCNB3	sodium voltage-gated channel beta subunit 3	protein-coding
136523	chr2	177255351	177255730	+	0	NA	TTS (NR_036075)	TTS (NR_036075)	470	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
139720	chr2	227871301	227871700	+	0	NA	promoter-TSS (NM_178821)	promoter-TSS (NM_178821)	124	NR_138459	164781		NM_178821	ENSG00000123977	DAW1	CILD52|DNAAF18|ODA16|WDR69	dynein assembly factor with WD repeats 1	protein-coding
206070	chr7	27169401	27170100	+	0	NA	promoter-TSS (NR_029911)	promoter-TSS (NR_029911)	-187	NR_029911	442920		NR_029911	ENSG00000283745	MIR196B	MIRN196B|miR-196b|miRNA196B	microRNA 196b	ncRNA
233978	chrX	2705051	2705630	+	0	NA	intron (NR_135623, intron 1 of 10)	intron (NR_135623, intron 1 of 10)	14045	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
116571	chr19	18240321	18241050	+	0	NA	intron (NM_000923, intron 1 of 15)	AluSc|SINE|Alu	-6306	NM_001330172	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
221537	chr8	124711001	124711400	+	0	NA	intron (NM_001363300, intron 1 of 12)	intron (NM_001363300, intron 1 of 12)	17273	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
23387	chr1	228184201	228184630	+	0	NA	Intergenic	L1MD1|LINE|L1	9845	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
212312	chr7	127187751	127188050	+	0	NA	intron (NM_001371087, intron 1 of 9)	MIR3|SINE|MIR	-27227	NR_110195	101928333		NR_110194	ENSG00000236340	GRM8-AS1	-	GRM8 antisense RNA 1	ncRNA
106918	chr18	26171221	26171300	+	0	NA	intron (NM_144662, intron 4 of 6)	intron (NM_144662, intron 4 of 6)	37391	NM_001308188	143471		NM_144662	ENSG00000154611	PSMA8	PSMA7L	proteasome 20S subunit alpha 8	protein-coding
120598	chr19	45019471	45020580	+	0	NA	intron (NM_006509, intron 3 of 10)	AluSp|SINE|Alu	18561	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
133010	chr2	111633851	111634550	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	136934	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
10681	chr1	72282201	72283630	+	0	NA	promoter-TSS (NM_173808)	promoter-TSS (NM_173808)	-376	NM_173808	257194		NM_173808	ENSG00000172260	NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding
6143	chr1	27382821	27383880	+	0	NA	promoter-TSS (NM_001330448)	promoter-TSS (NM_001330448)	-17	NM_001330448	388611		NM_207397	ENSG00000174950	CD164L2	EAPG6122|UNQ6122	CD164 molecule like 2	protein-coding
14355	chr1	144019851	144020500	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-46656	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
164887	chr3	71092451	71093350	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-27976	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
97390	chr17	43363401	43363600	+	0	NA	Intergenic	LTR52|LTR|ERVL	25398	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
71925	chr15	22809871	22810730	+	0	NA	intron (NM_144599, intron 1 of 4)	intron (NM_144599, intron 1 of 4)	23656	NM_144599	123606		NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
44756	chr11	112084251	112084550	+	0	NA	TTS (NR_028383)	TTS (NR_028383)	2356	NM_012459	26521		NM_012459	ENSG00000150779	TIMM8B	DDP2|TIM8B	translocase of inner mitochondrial membrane 8 homolog B	protein-coding
160389	chr3	28008101	28008700	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-174264	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
49343	chr12	22110221	22110530	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	64157	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
65678	chr14	52693271	52693430	+	0	NA	intron (NM_001382467, intron 1 of 14)	MLT2A1|LTR|ERVL	2208	NM_001382476	30001		NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
22702	chr1	223994621	223995130	+	0	NA	intron (NR_136590, intron 1 of 3)	intron (NR_136590, intron 1 of 3)	2145	NR_136593	100287497		NR_136590		SEPTIN7P13	-	septin 7 pseudogene 13	pseudo
87719	chr16	75064751	75065430	+	0	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	51682	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
135358	chr2	160410851	160411550	+	0	NA	intron (NM_016836, intron 1 of 13)	MLT1M|LTR|ERVL-MaLR	-3318	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
82528	chr16	18341901	18342450	+	0	NA	promoter-TSS (NR_103772).3	promoter-TSS (NR_103772).3	-558	NR_103772	100288162		NR_103772		LOC100288162	-	uncharacterized LOC100288162	ncRNA
215749	chr8	1953621	1953880	+	0	NA	intron (NM_001308152, intron 27 of 27)	L1ME4a|LINE|L1	-17647	NR_126346	104266957		NR_126346	ENSG00000253696	KBTBD11-OT1	-	KBTBD11 overlapping transcript 1	ncRNA
17625	chr1	157044471	157044630	+	0	NA	5' UTR (NM_198236, exon 1 of 41)	5' UTR (NM_198236, exon 1 of 41)	1192	NM_001377419	9826		NM_014784	ENSG00000132694	ARHGEF11	GTRAP48|PDZ-RHOGEF	Rho guanine nucleotide exchange factor 11	protein-coding
222185	chr8	133032951	133033050	+	0	NA	intron (NM_003235, intron 41 of 47)	MIRc|SINE|MIR	13581	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
170787	chr3	188973271	188973630	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-25811	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
95045	chr17	32518121	32518450	+	0	NA	intron (NM_015194, intron 21 of 21)	L2c|LINE|L2	31292	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
112380	chr19	6060871	6061450	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	49340	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
101734	chr17	69335101	69335400	+	0	NA	Intergenic	Intergenic	-8117	NM_172232	23461		NM_018672	ENSG00000154265	ABCA5	ABC13|EST90625|HTC3	ATP binding cassette subfamily A member 5	protein-coding
233082	chr9	137102471	137102830	+	0	NA	intron (NM_016219, intron 8 of 12)	intron (NM_016219, intron 8 of 12)	12083	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
56134	chr12	111056421	111057700	+	0	NA	intron (NM_015267, intron 1 of 21)	intron (NM_015267, intron 1 of 21)	22895	NM_015267	23316		NM_015267	ENSG00000111249	CUX2	CDP2|CUTL2|DEE67|EIEE67	cut like homeobox 2	protein-coding
149536	chr21	33024051	33024850	+	0	NA	Intergenic	CpG	-1485	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
179454	chr4	184424121	184424380	+	0	NA	intron (NM_002199, intron 2 of 8)	intron (NM_002199, intron 2 of 8)	-41944	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
117408	chr19	19622801	19623130	+	0	NA	TTS (NM_004720)	TTS (NM_004720)	-4278	NR_038198	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
238733	chrX	154258751	154259050	+	0	NA	intron (NM_000513, intron 1 of 5).3	intron (NM_000513, intron 1 of 5).3	1340	NM_001330067	101060233		NM_001330067	ENSG00000269433	OPN1MW3	GCP|GOP|OPN1MW|OPN1MW2	opsin 1, medium wave sensitive 3	protein-coding
82467	chr16	17101671	17101830	+	0	NA	TTS (NM_022166)	TTS (NM_022166)	-32754	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
155305	chr22	38183151	38184300	+	0	NA	Intergenic	MIRb|SINE|MIR	-1895	NM_001349866	8398		NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
149811	chr21	34996271	34996430	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	43076	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
52027	chr12	53995151	53996480	+	0	NA	intron (NR_047505, intron 2 of 2)	intron (NR_047505, intron 2 of 2)	970	NR_047505	100874364		NR_047505	ENSG00000250133	HOXC-AS2	-	HOXC cluster antisense RNA 2	ncRNA
37693	chr11	28105501	28106330	+	0	NA	intron (NM_031217, intron 1 of 16)	MIRb|SINE|MIR	2241	NM_031217	81930		NM_031217	ENSG00000121621	KIF18A	MS-KIF18A|PPP1R99	kinesin family member 18A	protein-coding
212037	chr7	114939571	114940130	+	0	NA	intron (NM_199072, intron 2 of 4)	Charlie13b|DNA|hAT-Charlie	17696	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
189438	chr5	172954221	172954850	+	0	NA	TTS (NR_026683)	TTS (NR_026683)	-4194	NM_001317981	51121		NM_016093	ENSG00000037241	RPL26L1	RPL26P1	ribosomal protein L26 like 1	protein-coding
177202	chr4	108355251	108356400	+	0	NA	Intergenic	Intergenic	183705	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
70327	chr14	101836921	101837250	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	27222	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
25907	chr10	11297371	11297530	+	0	NA	intron (NM_001326330, intron 9 of 12)	intron (NM_001326330, intron 9 of 12)	47224	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
159810	chr3	16343821	16344080	+	0	NA	intron (NM_015150, intron 7 of 9)	intron (NM_015150, intron 7 of 9)	78738	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
119890	chr19	41546261	41547130	+	0	NA	Intergenic	Intergenic	-2823	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
140622	chr2	233442701	233443100	+	0	NA	intron (NM_001377259, intron 8 of 27)	AluSc|SINE|Alu	23688	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
223269	chr8	143719401	143719600	+	0	NA	intron (NM_139021, intron 7 of 13)	intron (NM_139021, intron 7 of 13)	3151	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
181091	chr5	36887471	36888050	+	0	NA	intron (NM_133433, intron 1 of 46)	L2|LINE|L2	10991	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
191859	chr6	15262751	15263300	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	14170	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
66221	chr14	61322601	61323350	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	1532	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
222357	chr8	133564371	133564530	+	0	NA	intron (NM_173344, intron 1 of 9)	LTR54|LTR|ERV1	7437	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
126629	chr2	28808251	28808350	+	0	NA	Intergenic	Intergenic	-2534	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
112234	chr19	5713821	5714880	+	0	NA	intron (NM_001276480, intron 1 of 17)	AluSx|SINE|Alu	5796	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
182452	chr5	62317101	62317300	+	0	NA	intron (NM_001243952, intron 2 of 20)	AluSp|SINE|Alu	10994	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
49794	chr12	31956301	31956500	+	0	NA	Intergenic	LTR10F|LTR|ERV1	-3015	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
100536	chr17	62504951	62505400	+	0	NA	intron (NM_001375269, intron 2 of 20)	intron (NM_001375269, intron 2 of 20)	24062	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
71759	chr15	21107551	21107850	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	104423	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
163831	chr3	52458571	52458730	+	0	NA	intron (NM_001276294, intron 2 of 13)	intron (NM_001276294, intron 2 of 13)	3046	NM_001276294	11188		NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding
75751	chr15	68326701	68327100	+	0	NA	intron (NM_001004439, intron 16 of 29)	intron (NM_001004439, intron 16 of 29)	49155	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
33169	chr10	112950901	112952850	+	0	NA	intron (NM_001198530, intron 3 of 10)	intron (NM_001198530, intron 3 of 10)	1625	NM_001363501	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
57864	chr12	123363421	123363980	+	0	NA	intron (NM_018183, intron 1 of 31)	intron (NM_018183, intron 1 of 31)	1143	NR_107039	102466877		NR_107039	ENSG00000284425	MIR8072	hsa-mir-8072	microRNA 8072	ncRNA
237422	chrX	119636621	119636880	+	0	NA	intron (NM_145799, intron 7 of 10)	intron (NM_145799, intron 7 of 10)	10098	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
100811	chr17	64062921	64063480	+	0	NA	intron (NM_001433, intron 10 of 21)	intron (NM_001433, intron 10 of 21)	-42566	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
133989	chr2	130829071	130829630	+	0	NA	Intergenic	Intergenic	-7564	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
203987	chr7	1733451	1733850	+	0	NA	intron (NM_001128636, intron 2 of 2)	intron (NM_001128636, intron 2 of 2)	8660	NR_120509	101927125		NR_120508	ENSG00000236081	ELFN1-AS1	MYCLo-2	ELFN1 antisense RNA 1	ncRNA
238634	chrX	153965971	153966130	+	0	NA	intron (NM_005334, intron 1 of 25)	AluJr|SINE|Alu	-2715	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
147921	chr20	62908851	62909300	+	0	NA	intron (NM_001193369, intron 4 of 15)	intron (NM_001193369, intron 4 of 15)	17430	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
43474	chr11	78191771	78191930	+	0	NA	intron (NM_020798, intron 1 of 10)	AluY|SINE|Alu	2931	NM_020798	57558		NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
163516	chr3	51407701	51407900	+	0	NA	intron (NR_146065, intron 22 of 25)	AluSx1|SINE|Alu	16515	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
101633	chr17	68232801	68233450	+	0	NA	intron (NM_001346472, intron 2 of 7)	MLT1A|LTR|ERVL-MaLR	-14449	NM_001346474	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
11057	chr1	85047451	85048800	+	0	NA	intron (NM_001253693, intron 1 of 11)	CpG	375	NM_018298	55283		NM_018298	ENSG00000055732	MCOLN3	TRP-ML3|TRPML3	mucolipin TRP cation channel 3	protein-coding
229273	chr9	120495851	120496850	+	0	NA	intron (NM_018249, intron 12 of 37)	SVA_F|Retroposon|SVA	83817	NM_001011649	55755		NM_018249	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
157920	chr22	49778501	49779000	+	0	NA	intron (NR_146335, intron 9 of 13)	AluY|SINE|Alu	45581	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
89762	chr16	89456521	89457080	+	0	NA	intron (NM_001256182, intron 1 of 13)	L1MB5|LINE|L1	25882	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
98897	chr17	48586201	48587430	+	0	NA	intron (NM_001384749, intron 1 of 4)	intron (NM_001384749, intron 1 of 4)	3426	NM_001384750	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
217139	chr8	25457201	25459470	+	0	NA	promoter-TSS (NM_001317907)	promoter-TSS (NM_001317907)	98	NM_017634	54793		NM_017634	ENSG00000104756	KCTD9	BTBD27	potassium channel tetramerization domain containing 9	protein-coding
6035	chr1	27113821	27114680	+	0	NA	exon (NM_003047, exon 2 of 12)	exon (NM_003047, exon 2 of 12)	40875	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
109622	chr19	973021	973880	+	0	NA	3' UTR (NM_005224, exon 9 of 9)	3' UTR (NM_005224, exon 9 of 9)	-9478	NM_001372085	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
168998	chr3	152427171	152427650	+	0	NA	intron (NM_207295, intron 3 of 8)	AluJr4|SINE|Alu	-86420	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
16889	chr1	155856601	155857680	+	0	NA	promoter-TSS (NM_032292)	promoter-TSS (NM_032292)	74	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
234311	chrX	13724721	13725830	+	0	NA	intron (NM_014563, intron 1 of 4)	L1PA6|LINE|L1	9345	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
9078	chr1	44841571	44841730	+	0	NA	intron (NM_001166292, intron 2 of 22)	intron (NM_001166292, intron 2 of 22)	1294	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
136338	chr2	175227301	175227500	+	0	NA	Intergenic	L1MC5|LINE|L1	-45690	NM_001002258	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
167353	chr3	128764001	128764430	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	38032	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
221248	chr8	122673421	122673830	+	0	NA	intron (NR_126348, intron 2 of 3)	intron (NR_126348, intron 2 of 3)	20481	NR_126348	104266958		NR_126348		LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA
170251	chr3	184240501	184241050	+	0	NA	promoter-TSS (NR_030410)	promoter-TSS (NR_030410)	-630	NR_030410	100187716		NR_030410	ENSG00000221120	MIR1224	MIRN1224|mir-1224	microRNA 1224	ncRNA
17523	chr1	156771201	156771680	+	0	NA	intron (NM_005973, intron 1 of 6)	L2c|LINE|L2	3905	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
62218	chr13	98496021	98496300	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	25965	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
34786	chr11	217571	217930	+	0	NA	intron (NM_001370324, intron 5 of 5)	intron (NM_001370324, intron 5 of 5)	8414	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
201567	chr6	149322001	149322880	+	0	NA	intron (NM_015093, intron 1 of 8)	intron (NM_015093, intron 1 of 8)	4140	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
131569	chr2	96815571	96817380	+	0	NA	exon (NM_017623, exon 1 of 8)	exon (NM_017623, exon 1 of 8)	207	NM_017623	26505		NM_017623	ENSG00000168763	CNNM3	ACDP3	cyclin and CBS domain divalent metal cation transport mediator 3	protein-coding
26563	chr10	21702571	21703430	+	0	NA	intron (NM_004641, intron 14 of 23)	L1MA4A|LINE|L1	168768	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
238116	chrX	136648021	136648480	+	0	NA	promoter-TSS (NM_000074)	promoter-TSS (NM_000074)	92	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
38120	chr11	35239721	35240100	+	0	NA	Intergenic	Intergenic	76960	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
146110	chr20	48281351	48281470	+	0	NA	Intergenic	AluJo|SINE|Alu	-78501	NR_026958	284749		NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
87757	chr16	75248821	75249300	+	0	NA	promoter-TSS (NM_001170719).2	promoter-TSS (NM_001170719).2	-909	NM_001170719	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
138610	chr2	208373421	208373730	+	0	NA	intron (NR_163994, intron 1 of 14)	intron (NR_163994, intron 1 of 14)	13883	NR_163994	5746		NM_005048	ENSG00000144407	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
224961	chr9	33051571	33052080	+	0	NA	intron (NM_018225, intron 10 of 11)	AluSp|SINE|Alu	24849	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
97491	chr17	43878271	43879230	+	0	NA	intron (NM_001278381, intron 13 of 13)	intron (NM_001278381, intron 13 of 13)	21874	NM_001278376	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
97805	chr17	44778271	44778430	+	0	NA	intron (NM_001318933, intron 25 of 26)	intron (NM_001318933, intron 25 of 26)	19362	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
166792	chr3	122560551	122561550	+	0	NA	intron (NM_001146103, intron 1 of 10)	L2|LINE|L2	3250	NM_001146105	83666		NM_031458	ENSG00000138496	PARP9	ARTD9|BAL|BAL1|MGC:7868	poly(ADP-ribose) polymerase family member 9	protein-coding
202494	chr6	158316571	158316730	+	0	NA	intron (NM_001007466, intron 1 of 12)	MLT1E|LTR|ERVL-MaLR	4185	NM_001007466	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
189867	chr5	177299651	177300850	+	0	NA	TTS (NM_001365684)	TTS (NM_001365684)	3469	NM_001031677	53917		NM_130781	ENSG00000169228	RAB24	-	RAB24, member RAS oncogene family	protein-coding
212210	chr7	118288071	118288350	+	0	NA	Intergenic	L1M3b|LINE|L1	63506	NM_019644	56311		NM_019644	ENSG00000106013	ANKRD7	TSA806	ankyrin repeat domain 7	protein-coding
168966	chr3	152388701	152388900	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-47810	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
131680	chr2	97716771	97717480	+	0	NA	intron (NM_001079, intron 2 of 13)	intron (NM_001079, intron 2 of 13)	3243	NM_001378594	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
78771	chr15	99250121	99250380	+	0	NA	promoter-TSS (NM_001288615)	promoter-TSS (NM_001288615)	-669	NM_001288615	64927		NM_022905	ENSG00000103852	TTC23	HCC-8	tetratricopeptide repeat domain 23	protein-coding
227153	chr9	86339551	86339930	+	0	NA	intron (NM_024617, intron 8 of 26)	intron (NM_024617, intron 8 of 26)	14670	NM_001185074	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
25336	chr10	6240701	6240900	+	0	NA	intron (NM_001363545, intron 14 of 14)	L1MD3|LINE|L1	37868	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
231186	chr9	129912321	129913230	+	0	NA	intron (NM_001363755, intron 11 of 15)	intron (NM_001363755, intron 11 of 15)	43170	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
52199	chr12	54363521	54363780	+	0	NA	exon (NM_020370, exon 2 of 2)	exon (NM_020370, exon 2 of 2)	836	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
167059	chr3	126979201	126979630	+	0	NA	Intergenic	Intergenic	-9179	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
134000	chr2	130864801	130865100	+	0	NA	intron (NM_001375900, intron 1 of 12)	intron (NM_001375900, intron 1 of 12)	28036	NM_001375901	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
214664	chr7	150931201	150931480	+	0	NA	Intergenic	LTR33B|LTR|ERVL	24464	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
73638	chr15	44674651	44675680	+	0	NA	intron (NM_001330283, intron 2 of 14)	intron (NM_001330283, intron 2 of 14)	1723	NM_001330283	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
156111	chr22	40089171	40089980	+	0	NA	intron (NM_001024843, intron 1 of 23)	L1MC1|LINE|L1	44758	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
116191	chr19	17467451	17467980	+	0	NA	Intergenic	AluSz|SINE|Alu	-2809	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
120178	chr19	42259601	42260030	+	0	NA	Intergenic	AluSx|SINE|Alu	-4687	NM_001312656	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
226743	chr9	76020701	76020900	+	0	NA	intron (NM_006200, intron 3 of 20)	intron (NM_006200, intron 3 of 20)	130127	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
135894	chr2	171162371	171162530	+	0	NA	intron (NM_001136554, intron 1 of 20)	AluSg|SINE|Alu	-1557	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
229540	chr9	122896801	122897380	+	0	NA	intron (NM_018835, intron 2 of 17)	MER30|DNA|hAT-Charlie	8269	NM_001354486	54542		NM_018835	ENSG00000056586	RC3H2	MNAB|RNF164	ring finger and CCCH-type domains 2	protein-coding
186813	chr5	139384901	139386080	+	0	NA	Intergenic	Intergenic	-2140	NM_152685	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
31988	chr10	100828791	100829580	+	0	NA	3' UTR (NM_000278, exon 10 of 10)	3' UTR (NM_000278, exon 10 of 10)	83603	NM_003988	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
65807	chr14	54776251	54777100	+	0	NA	intron (NM_015589, intron 11 of 12)	intron (NM_015589, intron 11 of 12)	21842	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
216941	chr8	22916071	22916680	+	0	NA	intron (NM_001363233, intron 3 of 6)	intron (NM_001363233, intron 3 of 6)	11539	NM_144962	157310		NM_144962	ENSG00000134020	PEBP4	CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4	phosphatidylethanolamine binding protein 4	protein-coding
85385	chr16	50285671	50286030	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	-6766	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
133548	chr2	120346951	120347730	+	0	NA	intron (NM_002193, intron 1 of 1)	CpG	1204	NM_002193	3625		NM_002193	ENSG00000163083	INHBB	-	inhibin subunit beta B	protein-coding
128348	chr2	54897621	54898080	+	0	NA	intron (NM_001039753, intron 20 of 40)	intron (NM_001039753, intron 20 of 40)	112422	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
224855	chr9	29450671	29450880	+	0	NA	Intergenic	L1PA3|LINE|L1	-237174	NM_001258282	158038		NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
154409	chr22	35327901	35328680	+	0	NA	intron (NR_156428, intron 6 of 13)	intron (NR_156428, intron 6 of 13)	-7350	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
105595	chr18	623901	624350	+	0	NA	intron (NM_001375492, intron 5 of 10)	intron (NM_001375492, intron 5 of 10)	7425	NM_199167	27098		NM_014410	ENSG00000079101	CLUL1	RA337M	clusterin like 1	protein-coding
328	chr1	986901	987300	+	0	NA	Intergenic	Intergenic	-5007	NM_001291366	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
190914	chr6	2846201	2847280	+	0	NA	Intergenic	L2b|LINE|L2	-4877	NM_030666	1992		NM_030666	ENSG00000021355	SERPINB1	EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2	serpin family B member 1	protein-coding
50441	chr12	47707951	47708580	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-2204	NM_001146075	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
201710	chr6	149715921	149716700	+	0	NA	non-coding (NR_073033, exon 1 of 9)	non-coding (NR_073033, exon 1 of 9)	115	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
95332	chr17	35745051	35745350	+	0	NA	exon (NM_139285, exon 6 of 6)	exon (NM_139285, exon 6 of 6)	8039	NM_139285	246176		NM_139285	ENSG00000270765	GAS2L2	CILD41|GAR17	growth arrest specific 2 like 2	protein-coding
78948	chr15	101287001	101287800	+	0	NA	intron (NR_135507, intron 1 of 4)	L1PA5|LINE|L1	7848	NR_135506	6627		NM_003090	ENSG00000131876	SNRPA1	Lea1|U2A'	small nuclear ribonucleoprotein polypeptide A'	protein-coding
226644	chr9	74498471	74498850	+	0	NA	promoter-TSS (NR_125791)	promoter-TSS (NR_125791)	-107	NR_125791	103752585		NR_125791		RORB-AS1	-	RORB antisense RNA 1	ncRNA
162157	chr3	46972571	46973180	+	0	NA	intron (NM_144716, intron 2 of 7)	L1MB3|LINE|L1	3626	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
31239	chr10	91901701	91902680	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	7296	NM_152429	143282		NM_152429	ENSG00000174721	FGFBP3	C10orf13|FGF-BP3	fibroblast growth factor binding protein 3	protein-coding
14534	chr1	144859501	144859950	+	0	NA	intron (NR_104189, intron 2 of 3).2	AluJr|SINE|Alu	141554	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
35231	chr11	834371	834630	+	0	NA	intron (NM_139030, intron 1 of 7)	intron (NM_139030, intron 1 of 7)	1548	NM_139029	977		NM_004357	ENSG00000177697	CD151	EBS7|GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24	CD151 molecule (Raph blood group)	protein-coding
193800	chr6	31430171	31431100	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-11032	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
214763	chr7	151078201	151079030	+	0	NA	exon (NM_006712, exon 4 of 10)	exon (NM_006712, exon 4 of 10)	2194	NM_006712	10922		NM_006712	ENSG00000164896	FASTK	FAST	Fas activated serine/threonine kinase	protein-coding
55266	chr12	102702571	102702730	+	0	NA	Intergenic	Intergenic	121749	NR_033855	283432		NR_033855	ENSG00000258169	LINC00485	-	long intergenic non-protein coding RNA 485	ncRNA
208780	chr7	73576901	73577100	+	0	NA	intron (NM_001362660, intron 1 of 7)	AluY|SINE|Alu	1387	NM_001362663	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
134281	chr2	135797251	135798100	+	0	NA	intron (NM_002299, intron 13 of 16)	intron (NM_002299, intron 13 of 16)	-22516	NR_045486	100507600		NR_045486	ENSG00000226806	LCT-AS1	-	LCT antisense RNA 1	ncRNA
90703	chr17	1769251	1770630	+	0	NA	exon (NM_001329903, exon 3 of 8)	exon (NM_001329903, exon 3 of 8)	-1731	NM_001329905	5176		NM_002615	ENSG00000132386	SERPINF1	EPC-1|OI12|OI6|PEDF|PIG35	serpin family F member 1	protein-coding
185610	chr5	131422071	131422580	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	158272	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
42986	chr11	73931351	73931550	+	0	NA	TTS (NM_001267803)	TTS (NM_001267803)	-19576	NM_153614	374407		NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
20714	chr1	200838001	200838200	+	0	NA	intron (NM_203459, intron 6 of 16)	intron (NM_203459, intron 6 of 16)	-34881	NM_005298	2848		NM_005298	ENSG00000170128	GPR25	-	G protein-coupled receptor 25	protein-coding
165258	chr3	73502671	73502830	+	0	NA	intron (NM_015009, intron 3 of 9)	intron (NM_015009, intron 3 of 9)	-18572	NR_121660	101927296		NR_121660		LOC101927296	-	uncharacterized LOC101927296	ncRNA
164002	chr3	53166551	53166850	+	0	NA	intron (NM_001316327, intron 2 of 18)	intron (NM_001316327, intron 2 of 18)	-2003	NM_001354678	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
140400	chr2	233083571	233084100	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	23493	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
173601	chr4	10629421	10629680	+	0	NA	intron (NM_052964, intron 2 of 18)	intron (NM_052964, intron 2 of 18)	55218	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
136461	chr2	177151551	177152000	+	0	NA	Intergenic	L2c|LINE|L2	60636	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
20675	chr1	200411571	200411730	+	0	NA	Intergenic	MER21B|LTR|ERVL	-1614	NM_001281293	23528		NM_012482	ENSG00000162702	ZNF281	GZP1|ZBP-99|ZBP99|ZNP-99	zinc finger protein 281	protein-coding
217267	chr8	27331721	27332400	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	6496	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
161682	chr3	43377871	43378500	+	0	NA	intron (NM_001204831, intron 11 of 12)	intron (NM_001204831, intron 11 of 12)	-26223	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
200287	chr6	132796271	132797150	+	0	NA	intron (NM_052831, intron 2 of 13)	intron (NM_052831, intron 2 of 13)	1927	NM_052831	116843		NM_052831	ENSG00000146409	SLC18B1	C6orf192|VPAT|dJ55C23.6	solute carrier family 18 member B1	protein-coding
47970	chr12	6876751	6877500	+	0	NA	intron (NR_135083, intron 3 of 3)	L2|LINE|L2	-3822	NM_032641	84727		NM_032641	ENSG00000111671	SPSB2	GRCC9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding
61308	chr13	50298771	50298930	+	0	NA	intron (NR_109974, intron 2 of 6)	L1PA7|LINE|L1	126832	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
130289	chr2	84897621	84897880	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	-7906	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
136790	chr2	181472901	181473880	+	0	NA	intron (NM_000885, intron 2 of 27)	MER1B|DNA|hAT-Charlie	16004	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
150401	chr21	42311021	42311280	+	0	NA	TTS (NM_003226)	TTS (NM_003226)	4259	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
202006	chr6	152589001	152589200	+	0	NA	intron (NM_033071, intron 2 of 145)	AluSx|SINE|Alu	47751	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
139593	chr2	224986221	224987080	+	0	NA	intron (NM_014689, intron 1 of 55)	MLT1B|LTR|ERVL-MaLR	-4223	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
7441	chr1	32989071	32989430	+	0	NA	Intergenic	Intergenic	-24441	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
53901	chr12	71439051	71439400	+	0	NA	promoter-TSS (NM_001277227)	promoter-TSS (NM_001277227)	-573	NR_110596	8549		NM_003667	ENSG00000139292	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine rich repeat containing G protein-coupled receptor 5	protein-coding
74997	chr15	63939551	63940300	+	0	NA	intron (NR_169522, intron 3 of 11)	intron (NR_169522, intron 3 of 11)	11651	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
197443	chr6	73732871	73733780	+	0	NA	intron (NM_001159587, intron 4 of 32)	intron (NM_001159587, intron 4 of 32)	37122	NM_133493	135228		NM_133493	ENSG00000156535	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
120062	chr19	42071301	42072130	+	0	NA	intron (NM_001330519, intron 1 of 1)	intron (NM_001330519, intron 1 of 1)	3238	NM_001330519	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
166547	chr3	115164021	115164650	+	0	NA	Intergenic	Intergenic	-17047	NM_001348803	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
188894	chr5	160007171	160007530	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1750	NM_001282500	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
30953	chr10	87797671	87798100	+	0	NA	intron (NR_135914, intron 2 of 10)	MER4-int|LTR|ERV1	20346	NM_001321968	84896		NM_032810	ENSG00000138138	ATAD1	AFDC1|FNP001|HKPX4|Msp1|THORASE|hATAD1	ATPase family AAA domain containing 1	protein-coding
79505	chr16	792851	793800	+	0	NA	intron (NM_022092, intron 14 of 21)	CpG-8897	4705	NM_022092	63922		NM_022092	ENSG00000127586	CHTF18	C16orf41|C321D2.2|C321D2.3|C321D2.4|CHL12|Ctf18|RUVBL	chromosome transmission fidelity factor 18	protein-coding
168612	chr3	149527571	149527730	+	0	NA	intron (NM_001348362, intron 8 of 9)	intron (NM_001348362, intron 8 of 9)	52953	NM_004617	7104		NM_004617	ENSG00000169903	TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
173951	chr4	25911821	25912080	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-2242	NM_001145432	389203		NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7|PNX	small integral membrane protein 20	protein-coding
8157	chr1	39413651	39414150	+	0	NA	exon (NM_015038, exon 1 of 1)	exon (NM_015038, exon 1 of 1)	4827	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
149084	chr21	15775871	15776430	+	0	NA	intron (NM_001352561, intron 3 of 23)	intron (NM_001352561, intron 3 of 23)	46168	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
53372	chr12	64673771	64673930	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-51245	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
3422	chr1	15834161	15835300	+	0	NA	non-coding (NR_024279, exon 2 of 2)	non-coding (NR_024279, exon 2 of 2)	-12977	NM_015001	23013		NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RATARS|RBM15C|SHARP	spen family transcriptional repressor	protein-coding
13204	chr1	112635001	112635980	+	0	NA	intron (NM_006135, intron 1 of 9)	intron (NM_006135, intron 1 of 9)	15658	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
223137	chr8	143498271	143498830	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	7698	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
146069	chr20	47500521	47501030	+	0	NA	Intergenic	L2a|LINE|L2	-1112	NM_181659	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
110507	chr19	2055631	2058850	+	0	NA	Intergenic	AluSp|SINE|Alu	-5996	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
237950	chrX	132693571	132693730	+	0	NA	intron (NM_001077188, intron 4 of 5)	intron (NM_001077188, intron 4 of 5)	26008	NR_046691	100874102		NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
232315	chr9	134698571	134698830	+	0	NA	intron (NM_001278074, intron 2 of 65)	intron (NM_001278074, intron 2 of 65)	-45857	NR_138049	414316		NR_138049		COL5A1-AS1	C9orf104|bA54A22.4	COL5A1 antisense RNA 1	ncRNA
14115	chr1	120933371	120934130	+	0	NA	intron (NR_109754, intron 1 of 2)	AluJb|SINE|Alu	-8850	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
189361	chr5	172455771	172456180	+	0	NA	Intergenic	LTR33|LTR|ERVL	-1450	NM_001017995	285590		NM_001017995	ENSG00000174705	SH3PXD2B	FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4	SH3 and PX domains 2B	protein-coding
61742	chr13	74191101	74191530	+	0	NA	Intergenic	Intergenic	-40129	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
182920	chr5	70584571	70584730	+	0	NA	intron (NR_034021, intron 1 of 10)	L1PA16|LINE|L1	1072	NR_034021	11042		NM_021036		GUSBP15	SMA5	GUSB pseudogene 15	pseudo
198778	chr6	108849921	108850180	+	0	NA	intron (NM_001286609, intron 1 of 16)	intron (NM_001286609, intron 1 of 16)	1628	NM_032131	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
87277	chr16	70018271	70018950	+	0	NA	intron (NR_003610, intron 12 of 25)	MIR|SINE|MIR	-11736	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
178382	chr4	146638701	146639580	+	0	NA	5' UTR (NM_004575, exon 1 of 2)	5' UTR (NM_004575, exon 1 of 2)	247	NM_004575	5458		NM_004575	ENSG00000151615	POU4F2	BRN3.2|BRN3B|Brn-3b	POU class 4 homeobox 2	protein-coding
52397	chr12	55738061	55740180	+	0	NA	Intergenic	Intergenic	-4002	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
159204	chr3	12884521	12884780	+	0	NA	intron (NR_136189, intron 1 of 2)	intron (NR_136189, intron 1 of 2)	561	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
59145	chr13	21476751	21477700	+	0	NA	Intergenic	LTR50|LTR|ERVL	-17855	NM_001286638	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
109400	chr19	672351	673230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3602	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
230013	chr9	127048951	127049500	+	0	NA	intron (NM_001322323, intron 5 of 16)	intron (NM_001322323, intron 5 of 16)	73410	NM_012098	23452		NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
9689	chr1	52976851	52976950	+	0	NA	intron (NM_001193599, intron 7 of 14)	intron (NM_001193599, intron 7 of 14)	-38037	NM_001007099	6342		NM_002979	ENSG00000116171	SCP2	NLTP|NSL-TP|SCOX|SCP-2|SCP-CHI|SCP-X|SCPX	sterol carrier protein 2	protein-coding
237600	chrX	123962871	123964030	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	1744	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
70097	chr14	100211871	100212030	+	0	NA	Intergenic	Intergenic	-27194	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
60293	chr13	40633271	40633430	+	0	NA	intron (NM_002015, intron 1 of 2)	L1MB8|LINE|L1	33291	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
36685	chr11	8683801	8684780	+	0	NA	promoter-TSS (NR_002580)	promoter-TSS (NR_002580)	63	NR_002580	619562		NR_002580	ENSG00000200983	SNORA3A	ACA3|SNORA3|SNORA45A	small nucleolar RNA, H/ACA box 3A	snoRNA
137106	chr2	190981571	190981930	+	0	NA	intron (NM_139266, intron 18 of 22)	intron (NM_139266, intron 18 of 22)	32421	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
173865	chr4	23889901	23890230	+	0	NA	promoter-TSS (NM_001354828)	promoter-TSS (NM_001354828)	-18	NM_013261	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
157452	chr22	45248001	45248230	+	0	NA	Intergenic	AluJb|SINE|Alu	-7221	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
123705	chr19	55029501	55029700	+	0	NA	intron (NM_001083899, intron 3 of 7).8	AluSx|SINE|Alu	8664	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
34053	chr10	124742701	124742950	+	0	NA	intron (NM_014661, intron 1 of 4)	CpG	1553	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
117064	chr19	19033001	19035230	+	0	NA	promoter-TSS (NR_147913)	promoter-TSS (NR_147913)	-271	NM_001352071	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
171312	chr3	195967051	195967150	+	0	NA	intron (NR_003264, intron 14 of 16)	intron (NR_003264, intron 14 of 16)	23179	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
107898	chr18	56873851	56874150	+	0	NA	intron (NM_052834, intron 19 of 26)	intron (NM_052834, intron 19 of 26)	198119	NR_048536	100885779		NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR|lincRNA-ST8SIA3	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
220969	chr8	115218571	115219730	+	0	NA	Intergenic	MIRc|SINE|MIR	448863	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
10799	chr1	77744821	77745080	+	0	NA	intron (NM_201624, intron 1 of 23)	L1P1|LINE|L1	14902	NM_001377431	23032		NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
78251	chr15	90813801	90814200	+	0	NA	intron (NM_001287248, intron 21 of 21)	intron (NM_001287248, intron 21 of 21)	-54588	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
100084	chr17	58308271	58308930	+	0	NA	exon (NM_024418, exon 21 of 31)	exon (NM_024418, exon 21 of 31)	-16850	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
100317	chr17	59834021	59834280	+	0	NA	intron (NM_001329395, intron 11 of 12)	AluSq2|SINE|Alu	-7116	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
230319	chr9	127968071	127968850	+	0	NA	intron (NM_001035254, intron 1 of 10)	L2a|LINE|L2	12529	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
20222	chr1	193160951	193161130	+	0	NA	intron (NM_024529, intron 10 of 16)	intron (NM_024529, intron 10 of 16)	24537	NR_031691	100302163		NR_031691	ENSG00000221680	MIR1278	MIRN1278|hsa-mir-1278|mir-1278	microRNA 1278	ncRNA
92572	chr17	9115351	9115900	+	0	NA	intron (NM_004822, intron 2 of 6)	intron (NM_004822, intron 2 of 6)	63493	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
173739	chr4	16122851	16123350	+	0	NA	Intergenic	LTR77|LTR|ERV1	-39077	NM_006017	8842		NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding
94141	chr17	28330571	28330900	+	0	NA	intron (NM_174887, intron 2 of 5)	FAM|SINE|Alu	4737	NM_001267774	90410		NM_174887	ENSG00000109083	IFT20	-	intraflagellar transport 20	protein-coding
46553	chr11	128483411	128484150	+	0	NA	intron (NM_001162422, intron 1 of 3)	intron (NM_001162422, intron 1 of 3)	38530	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
91176	chr17	3843571	3844650	+	0	NA	intron (NM_001114118, intron 1 of 12)	intron (NM_001114118, intron 1 of 12)	2136	NM_001114118	55421		NM_018553	ENSG00000074356	NCBP3	C17orf85|ELG|HSA277841	nuclear cap binding subunit 3	protein-coding
75271	chr15	65032401	65033390	+	0	NA	Intergenic	Intergenic	-3256	NM_139242	123263		NM_139242	ENSG00000103707	MTFMT	COXPD15|FMT1|MC1DN27	mitochondrial methionyl-tRNA formyltransferase	protein-coding
71279	chr14	105252871	105253530	+	0	NA	intron (NM_001242788, intron 3 of 16)	intron (NM_001242788, intron 3 of 16)	-3796	NM_001242789	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
163337	chr3	50415801	50416200	+	0	NA	intron (NM_006030, intron 3 of 37)	intron (NM_006030, intron 3 of 37)	50637	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
193214	chr6	29827471	29827630	+	0	NA	promoter-TSS (NM_001384290)	promoter-TSS (NM_001384290)	-275	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
174259	chr4	38069221	38069550	+	0	NA	intron (NM_015173, intron 12 of 19)	intron (NM_015173, intron 12 of 19)	-40796	NM_001253913	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
146363	chr20	49268701	49269130	+	0	NA	intron (NM_021035, intron 3 of 13)	L1PA15|LINE|L1	9142	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
56515	chr12	116535771	116536130	+	0	NA	TTS (NR_027345)	TTS (NR_027345)	2515	NR_027346	100287569		NM_207436	ENSG00000196668	LINC00173	NCRNA00173	long intergenic non-protein coding RNA 173	ncRNA
196972	chr6	53060321	53060580	+	0	NA	intron (NM_001375400, intron 1 of 14)	intron (NM_001375400, intron 1 of 14)	1374	NM_001375398	22858		NM_014920	ENSG00000112144	CILK1	ECO|EJM10|ICK|LCK2|MRK|hICK	ciliogenesis associated kinase 1	protein-coding
94848	chr17	31496771	31496930	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	8742	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
55480	chr12	104719251	104719630	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	127807	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
107866	chr18	54959201	54959400	+	0	NA	intron (NM_025214, intron 1 of 11)	CpG	161	NM_025214	80323		NM_025214	ENSG00000166510	CCDC68	SE57-1	coiled-coil domain containing 68	protein-coding
43732	chr11	86058571	86059700	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	9949	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
155667	chr22	39026251	39026580	+	0	NA	intron (NM_152426, intron 4 of 6)	MLT1B|LTR|ERVL-MaLR	5288	NM_152426	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
110886	chr19	2640551	2641050	+	0	NA	intron (NM_052847, intron 2 of 4)	AluJo|SINE|Alu	10085	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
222965	chr8	143190651	143192050	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-21868	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
104819	chr17	81809821	81810330	+	0	NA	intron (NM_000160, intron 3 of 13)	MIR|SINE|MIR	5925	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
33367	chr10	117266351	117266650	+	0	NA	intron (NM_003054, intron 10 of 15)	intron (NM_003054, intron 10 of 15)	25386	NM_003054	6571		NM_003054	ENSG00000165646	SLC18A2	PKDYS2|SVAT|SVMT|VAT2|VMAT2	solute carrier family 18 member A2	protein-coding
234817	chrX	24151401	24151900	+	0	NA	intron (NM_001178086, intron 1 of 5)	intron (NM_001178086, intron 1 of 5)	1921	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
149317	chr21	29024071	29025470	+	0	NA	5' UTR (NM_001001992, exon 1 of 18)	5' UTR (NM_001001992, exon 1 of 18)	102	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
183071	chr5	73591001	73591830	+	0	NA	Intergenic	Intergenic	25672	NM_032175	84135		NM_032175	ENSG00000164338	UTP15	NET21	UTP15 small subunit processome component	protein-coding
21172	chr1	203768101	203768930	+	0	NA	intron (NM_017773, intron 1 of 4)	L2a|LINE|L2	-1123	NM_001282878	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
58766	chr12	132705351	132705650	+	0	NA	TTS (NM_018663)	TTS (NM_018663)	-5342	NM_001170544	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
33678	chr10	119894171	119894730	+	0	NA	intron (NR_037771, intron 1 of 17)	L2a|LINE|L2	1720	NM_007190	11196		NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A|iPLA1A|iPLA1beta	SEC23 interacting protein	protein-coding
211488	chr7	105152901	105153250	+	0	NA	intron (NM_182691, intron 6 of 14)	intron (NM_182691, intron 6 of 14)	116002	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
77012	chr15	78507151	78508480	+	0	NA	intron (NM_001083612, intron 1 of 4)	CpG	238	NM_001013619	123688		NM_001013619	ENSG00000188266	HYKK	AGPHD1	hydroxylysine kinase	protein-coding
218685	chr8	58409771	58410300	+	0	NA	Intergenic	L2c|LINE|L2	-1229	NM_001330535	137886		NM_001077619	ENSG00000215114	UBXN2B	p37	UBX domain protein 2B	protein-coding
22576	chr1	222713201	222714630	+	0	NA	TTS (NR_109927)	TTS (NR_109927)	540	NM_001375661	148362		NM_144695	ENSG00000162819	BROX	C1orf58	BRO1 domain and CAAX motif containing	protein-coding
90226	chr17	578721	579180	+	0	NA	intron (NM_018289, intron 12 of 17)	intron (NM_018289, intron 12 of 17)	-133010	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
64737	chr14	34543301	34543500	+	0	NA	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	-3314	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
70129	chr14	100260421	100261100	+	0	NA	intron (NM_003403, intron 1 of 4)	AluY|SINE|Alu	-16597	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
27580	chr10	32371951	32373480	+	0	NA	intron (NR_104163, intron 1 of 1)	intron (NR_104163, intron 1 of 1)	6054	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
132285	chr2	105037551	105039200	+	0	NA	intron (NM_182640, intron 1 of 10)	intron (NM_182640, intron 1 of 10)	121	NR_110603	102724691		NR_110603	ENSG00000224509	MRPS9-AS2	-	MRPS9 antisense RNA 2	ncRNA
38731	chr11	46837351	46837450	+	0	NA	intron (NM_014756, intron 1 of 42)	L1MC3|LINE|L1	8880	NM_001008938	9793		NM_014756	ENSG00000175216	CKAP5	CHTOG|MSPS|TOG|TOGp|ch-TOG	cytoskeleton associated protein 5	protein-coding
93597	chr17	19132551	19133200	+	0	NA	intron (NM_001129778, intron 2 of 3)	intron (NM_001129778, intron 2 of 3)	5286	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
166825	chr3	122792951	122794380	+	0	NA	exon (NM_001320728, exon 1 of 7)	exon (NM_001320728, exon 1 of 7)	166	NM_024610	79663		NM_024610	ENSG00000169087	HSPBAP1	PASS1	HSPB1 associated protein 1	protein-coding
218418	chr8	47602201	47603080	+	0	NA	intron (NM_001352944, intron 7 of 13)	intron (NM_001352944, intron 7 of 13)	-51448	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
211615	chr7	105910121	105910380	+	0	NA	Intergenic	Intergenic	-33651	NM_001385596	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
179040	chr4	165247851	165248350	+	0	NA	intron (NM_001161522, intron 3 of 13)	MLT1H|LTR|ERVL-MaLR	31923	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
208852	chr7	73706101	73706750	+	0	NA	intron (NM_001165903, intron 3 of 9)	intron (NM_001165903, intron 3 of 9)	-4892	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
222851	chr8	142623801	142624780	+	0	NA	Intergenic	(GTCCCT)n|Simple_repeat|Simple_repeat	-9811	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
212804	chr7	130344451	130344550	+	0	NA	promoter-TSS (NM_001127441)	promoter-TSS (NM_001127441)	-316	NM_001127441	93979		NM_080385	ENSG00000158525	CPA5	-	carboxypeptidase A5	protein-coding
68484	chr14	88007671	88008030	+	0	NA	intron (NM_003608, intron 1 of 1)	L1MEd|LINE|L1	2715	NM_003608	8477		NM_003608	ENSG00000140030	GPR65	TDAG8|hTDAG8	G protein-coupled receptor 65	protein-coding
151171	chr21	44966851	44967180	+	0	NA	intron (NM_001316983, intron 3 of 5)	intron (NM_001316983, intron 3 of 5)	26986	NM_058190	85395		NM_058190	ENSG00000160256	SLX9	C21orf70|FAM207A|PRED56	SLX9 ribosome biogenesis factor	protein-coding
97780	chr17	44655871	44656530	+	0	NA	promoter-TSS (NM_001145080)	promoter-TSS (NM_001145080)	-268	NM_001145080	284071		NM_001033659	ENSG00000180336	MEIOC	C17orf104	meiosis specific with coiled-coil domain	protein-coding
86239	chr16	58197201	58198680	+	0	NA	5' UTR (NM_001896, exon 1 of 12)	5' UTR (NM_001896, exon 1 of 12)	166	NM_001896	1459		NM_001896	ENSG00000070770	CSNK2A2	CK2A2|CK2alpha'|CSNK2A1	casein kinase 2 alpha 2	protein-coding
232426	chr9	136095001	136097030	+	0	NA	promoter-TSS (NM_144653)	promoter-TSS (NM_144653)	-726	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
58291	chr12	130761521	130762650	+	0	NA	Intergenic	Intergenic	-45780	NM_001351233	23504		NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
223028	chr8	143333621	143333880	+	0	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	1130	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
163441	chr3	50592201	50592400	+	0	NA	3' UTR (NM_001377425, exon 11 of 11)	3' UTR (NM_001377425, exon 11 of 11)	19474	NM_145071	1154		NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding
103186	chr17	77450981	77452580	+	0	NA	intron (NM_001293697, intron 1 of 9)	intron (NM_001293697, intron 1 of 9)	296	NM_001293697	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
159429	chr3	13638901	13639130	+	0	NA	TTS (NM_001165035)	TTS (NM_001165035)	-11706	NR_027103	285375		NR_027103	ENSG00000224514	LINC00620	-	long intergenic non-protein coding RNA 620	ncRNA
115942	chr19	16658601	16658800	+	0	NA	intron (NM_024104, intron 3 of 4)	intron (NM_024104, intron 3 of 4)	1444	NM_001300925	79086		NM_024104	ENSG00000214046	SMIM7	C19orf42	small integral membrane protein 7	protein-coding
28919	chr10	63169571	63169930	+	0	NA	intron (NM_001322258, intron 23 of 24)	intron (NM_001322258, intron 23 of 24)	36422	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
203680	chr7	1019401	1019830	+	0	NA	intron (NR_146964, intron 1 of 4)	intron (NR_146964, intron 1 of 4)	3411	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
204353	chr7	2895951	2896400	+	0	NA	Intergenic	Intergenic	-51867	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
67350	chr14	69682301	69682900	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	71004	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
92776	chr17	15699021	15700480	+	0	NA	promoter-TSS (NM_001130842)	promoter-TSS (NM_001130842)	-2	NM_001288646	57335		NM_020652	ENSG00000187607	ZNF286A	ZNF286	zinc finger protein 286A	protein-coding
50057	chr12	44659821	44660280	+	0	NA	intron (NM_001145108, intron 13 of 19)	intron (NM_001145108, intron 13 of 19)	215611	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
187456	chr5	142120901	142121100	+	0	NA	intron (NM_030571, intron 1 of 7)	intron (NM_030571, intron 1 of 7)	12221	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
229718	chr9	124857471	124858150	+	0	NA	TTS (NM_001276376)	TTS (NM_001276376)	4147	NM_007209	11224		NM_007209	ENSG00000136942	RPL35	DBA19|L35|uL29	ribosomal protein L35	protein-coding
130853	chr2	87341671	87342180	+	0	NA	Intergenic	CpG	-113502	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
54435	chr12	91681921	91682000	+	0	NA	Intergenic	L1M4c|LINE|L1	459753	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
105826	chr18	2973401	2973680	+	0	NA	intron (NM_001375808, intron 1 of 19)	L1ME1|LINE|L1	-26917	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
72357	chr15	31345001	31346130	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	18730	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
73837	chr15	49354651	49354760	+	0	NA	intron (NM_152647, intron 13 of 15)	L1PA2|LINE|L1	-68537	NM_002009	2252		NM_002009	ENSG00000140285	FGF7	HBGF-7|KGF	fibroblast growth factor 7	protein-coding
192131	chr6	16757551	16757650	+	0	NA	intron (NM_000332, intron 1 of 8)	intron (NM_000332, intron 1 of 8)	2584	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
157627	chr22	46073971	46074130	+	0	NA	Intergenic	Intergenic	-3029	NR_148973	642648		NR_148973		LINC02939	-	long intergenic non-protein coding RNA 2939	ncRNA
86988	chr16	68224251	68224550	+	0	NA	intron (NM_173163, intron 10 of 10)	AluSg4|SINE|Alu	9099	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
43536	chr11	82867521	82867900	+	0	NA	intron (NM_005040, intron 1 of 8)	intron (NM_005040, intron 1 of 8)	32720	NM_005040	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
47734	chr12	6475521	6475780	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-4973	NM_014231	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
29477	chr10	70565951	70566300	+	0	NA	intron (NM_014431, intron 19 of 19)	intron (NM_014431, intron 19 of 19)	36616	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
23797	chr1	234271351	234271450	+	0	NA	intron (NM_173508, intron 3 of 7)	intron (NM_173508, intron 3 of 7)	-35067	NR_039818	100616380		NR_039818	ENSG00000264377	MIR4671	-	microRNA 4671	ncRNA
35557	chr11	1652001	1652200	+	0	NA	Intergenic	Intergenic	-13497	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
237878	chrX	130916821	130917180	+	0	NA	Intergenic	Intergenic	-13683	NM_182314	10495		NM_006375	ENSG00000165675	ENOX2	APK1|COVA1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding
203569	chr7	904321	904880	+	0	NA	intron (NM_006869, intron 5 of 10)	intron (NM_006869, intron 5 of 10)	16289	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
128367	chr2	55009651	55010430	+	0	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	232	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133567	chr2	121492421	121492680	+	0	NA	intron (NM_001142274, intron 8 of 37)	L1MB8|LINE|L1	-38330	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
64620	chr14	30980051	30980730	+	0	NA	intron (NM_014574, intron 1 of 15)	intron (NM_014574, intron 1 of 15)	34352	NR_030354	693209		NR_030354	ENSG00000207952	MIR624	MIRN624|hsa-mir-624|mir-624	microRNA 624	ncRNA
141170	chr2	239273221	239273680	+	0	NA	intron (NM_006037, intron 2 of 26)	L1MC5|LINE|L1	-32012	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
184144	chr5	95285071	95285230	+	0	NA	promoter-TSS (NM_024717)	promoter-TSS (NM_024717)	-575	NM_024717	79772		NM_024717	ENSG00000175471	MCTP1	-	multiple C2 and transmembrane domain containing 1	protein-coding
168809	chr3	152209721	152210280	+	0	NA	Intergenic	Intergenic	-4571	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
147558	chr20	60087521	60088030	+	0	NA	promoter-TSS (NR_109916)	promoter-TSS (NR_109916)	89	NR_109918	729296		NR_109916	ENSG00000228340	LOC729296	-	uncharacterized LOC729296	ncRNA
170087	chr3	182989101	182989380	+	0	NA	Intergenic	AluSg|SINE|Alu	-3322	NM_001308101	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
215049	chr7	152586471	152586630	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	89591	NM_005431	7516		NM_005431	ENSG00000196584	XRCC2	FANCU|POF17|SPGF50	X-ray repair cross complementing 2	protein-coding
120236	chr19	42352371	42353280	+	0	NA	intron (NM_001410, intron 18 of 40)	intron (NM_001410, intron 18 of 40)	1694	NR_107044	102465875		NR_107044	ENSG00000277533	MIR8077	hsa-mir-8077	microRNA 8077	ncRNA
198495	chr6	106339271	106339730	+	0	NA	Intergenic	Intergenic	-13680	NM_001286107	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
191698	chr6	13636301	13636500	+	0	NA	intron (NM_005493, intron 10 of 13)	intron (NM_005493, intron 10 of 13)	21065	NM_016167	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
73014	chr15	40754701	40756050	+	0	NA	promoter-TSS (NM_001304802)	promoter-TSS (NM_001304802)	-39	NM_001323897	55177		NM_018145	ENSG00000137824	RMDN3	FAM82A2|FAM82C|RMD-3|RMD3|ptpip51	regulator of microtubule dynamics 3	protein-coding
222300	chr8	133479601	133480400	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	91887	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
22772	chr1	224411651	224412250	+	0	NA	intron (NM_001115113, intron 6 of 13)	FRAM|SINE|Alu	-13639	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
8992	chr1	44652551	44653380	+	0	NA	TTS (NM_001300746)	TTS (NM_001300746)	18091	NR_145816	109623472		NR_145816		SNORD145	-	small nucleolar RNA, C/D box 145	snoRNA
227488	chr9	91175971	91176130	+	0	NA	intron (NR_135306, intron 2 of 2)	AluSz|SINE|Alu	56988	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
65608	chr14	52259251	52259850	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-8148	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
54957	chr12	96250521	96251250	+	0	NA	intron (NM_005230, intron 3 of 4)	intron (NM_005230, intron 3 of 4)	-4613	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
91415	chr17	4707351	4707780	+	0	NA	Intergenic	Intergenic	-3067	NM_001330064	409		NM_004313	ENSG00000141480	ARRB2	ARB2|ARR2|BARR2	arrestin beta 2	protein-coding
58562	chr12	132411251	132411700	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-78676	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
18994	chr1	169427101	169427550	+	0	NA	5' UTR (NM_001300969, exon 1 of 6)	5' UTR (NM_001300969, exon 1 of 6)	149	NM_021179	57821		NM_021179	ENSG00000117477	CCDC181	C1orf114	coiled-coil domain containing 181	protein-coding
6232	chr1	27524001	27524830	+	0	NA	Intergenic	Intergenic	-34248	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
215192	chr7	155754271	155754600	+	0	NA	intron (NM_053043, intron 14 of 17)	intron (NM_053043, intron 14 of 17)	54728	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
133710	chr2	127361701	127361900	+	0	NA	intron (NM_001371911, intron 1 of 16)	MIRb|SINE|MIR	-18571	NM_006609	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
189848	chr5	177113071	177113230	+	0	NA	Intergenic	MIRb|SINE|MIR	-19929	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
209573	chr7	77414451	77414900	+	0	NA	promoter-TSS (NR_110073)	promoter-TSS (NR_110073)	-523	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
206770	chr7	36711371	36711530	+	0	NA	intron (NM_001177506, intron 1 of 21)	intron (NM_001177506, intron 1 of 21)	13044	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
139020	chr2	218392201	218392400	+	0	NA	intron (NM_000578, intron 11 of 14)	AluSp|SINE|Alu	-5933	NM_001206878	58190		NM_021198	ENSG00000144579	CTDSP1	NIF3|NLI-IF|NLIIF|SCP1	CTD small phosphatase 1	protein-coding
181873	chr5	54313151	54313450	+	0	NA	Intergenic	Intergenic	-2727	NM_019087	54622		NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
39633	chr11	61509311	61509980	+	0	NA	TTS (NR_039708)	TTS (NR_039708)	896	NM_001145077	390205		NM_001145077	ENSG00000204950	LRRC10B	-	leucine rich repeat containing 10B	protein-coding
227615	chr9	92761071	92761730	+	0	NA	intron (NM_001003800, intron 1 of 6)	intron (NM_001003800, intron 1 of 6)	3433	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
172206	chr4	1292051	1292150	+	0	NA	intron (NR_123716, intron 1 of 6)	intron (NR_123716, intron 1 of 6)	2209	NM_001297431	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
201548	chr6	149214851	149215150	+	0	NA	Intergenic	MamRep38|DNA|hAT	-2924	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
193857	chr6	31551171	31551800	+	0	NA	intron (NM_001144962, intron 2 of 3).3	MIRb|SINE|MIR	3877	NM_005007	4795		NM_005007	ENSG00000204498	NFKBIL1	IKBL|NFKBIL	NFKB inhibitor like 1	protein-coding
160783	chr3	32947371	32948130	+	0	NA	Intergenic	Intergenic	-3894	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
215227	chr7	156777601	156778000	+	0	NA	intron (NR_146958, intron 5 of 14)	L2|LINE|L2	115383	NM_001363412	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
191666	chr6	13435451	13436480	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	-27828	NM_001242630	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
42262	chr11	68207801	68208200	+	0	NA	intron (NR_161378, intron 1 of 9)	AluSg7|SINE|Alu	5296	NM_001369426	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
221267	chr8	122792651	122793430	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	11385	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
83975	chr16	29273701	29274380	+	0	NA	Intergenic	Intergenic	-28247	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
162100	chr3	46902271	46903150	+	0	NA	intron (NM_001184744, intron 13 of 14)	intron (NM_001184744, intron 13 of 14)	20461	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
122011	chr19	48596071	48596530	+	0	NA	intron (NM_177973, intron 5 of 6)	intron (NM_177973, intron 5 of 6)	-10442	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
108012	chr18	58755381	58755950	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	-58215	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
104952	chr17	81957051	81957750	+	0	NA	intron (NM_178493, intron 6 of 10)	intron (NM_178493, intron 6 of 10)	3787	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
215343	chr7	157370551	157371530	+	0	NA	intron (NM_001363676, intron 5 of 6)	MER1B|DNA|hAT-Charlie	34036	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
11441	chr1	89823151	89823250	+	0	NA	intron (NM_018103, intron 1 of 2)	intron (NM_018103, intron 1 of 2)	1261	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
15449	chr1	150319971	150320200	+	0	NA	Intergenic	Intergenic	-1383	NR_146767	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
190563	chr5	180807771	180808350	+	0	NA	intron (NR_157150, intron 1 of 1)	MIRc|SINE|MIR	1757	NM_001114618	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
14476	chr1	144518501	144519400	+	0	NA	Intergenic	Intergenic	32993	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
174883	chr4	48778421	48779800	+	0	NA	intron (NM_015030, intron 1 of 63)	intron (NM_015030, intron 1 of 63)	1169	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
234254	chrX	13101471	13102050	+	0	NA	Intergenic	Intergenic	-57140	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
57374	chr12	121798001	121798480	+	0	NA	intron (NR_152738, intron 4 of 4)	intron (NR_152738, intron 4 of 4)	-4552	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
82294	chr16	15598121	15598900	+	0	NA	intron (NM_001184998, intron 26 of 26).2	intron (NM_001184998, intron 26 of 26).2	12585	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
7653	chr1	35637151	35638050	+	0	NA	intron (NM_001199779, intron 1 of 5)	intron (NM_001199779, intron 1 of 5)	3926	NM_001199779	5690		NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome 20S subunit beta 2	protein-coding
104602	chr17	81409171	81409680	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-8647	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
209240	chr7	75866351	75866900	+	0	NA	Intergenic	Intergenic	-12367	NM_001346189	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
101082	chr17	64921671	64922180	+	0	NA	Intergenic	AluSx|SINE|Alu	-2434	NM_001303255	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
233734	chrX	1375801	1376000	+	0	NA	intron (NM_001267713, intron 7 of 9).2	MLT1B|LTR|ERVL-MaLR	16213	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
170314	chr3	184352601	184352800	+	0	NA	intron (NM_004366, intron 19 of 23)	intron (NM_004366, intron 19 of 23)	8905	NM_001171089	1181		NM_004366	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|FHA2|FHII|HALD2|LKPAT|clC-2	chloride voltage-gated channel 2	protein-coding
44723	chr11	111765401	111767030	+	0	NA	intron (NM_002716, intron 1 of 14)	CpG	174	NM_001177562	5519		NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding
39354	chr11	59555151	59555600	+	0	NA	Intergenic	AluY|SINE|Alu	39783	NR_036120	100422880		NR_036120	ENSG00000264559	MIR3162	mir-3162	microRNA 3162	ncRNA
138917	chr2	218166601	218167280	+	0	NA	promoter-TSS (NM_000634)	promoter-TSS (NM_000634)	22	NM_000634	3577		NM_000634	ENSG00000163464	CXCR1	C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA	C-X-C motif chemokine receptor 1	protein-coding
204059	chr7	1986401	1987200	+	0	NA	intron (NM_001304524, intron 12 of 16)	L1M7|LINE|L1	-46229	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
57	chr1	269971	270330	+	0	NA	Intergenic	Intergenic	-63553	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
134057	chr2	131424951	131425480	+	0	NA	Intergenic	CpG	19679	NR_002826	401010		NR_002826		NOC2LP2	-	NOC2 like nucleolar associated transcriptional repressor pseudogene 2	pseudo
208919	chr7	74061821	74062650	+	0	NA	intron (NM_001278918, intron 22 of 27)	intron (NM_001278918, intron 22 of 27)	-21569	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
177185	chr4	108165751	108168100	+	0	NA	promoter-TSS (NM_001166119)	promoter-TSS (NM_001166119)	-128	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
64571	chr14	24678351	24679380	+	0	NA	Intergenic	Intergenic	-44675	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
42591	chr11	72039551	72039850	+	0	NA	intron (NR_104476, intron 2 of 24)	intron (NR_104476, intron 2 of 24)	25409	NR_104178	100128494		NR_104178	ENSG00000251143	LOC100128494	-	uncharacterized LOC100128494	ncRNA
44188	chr11	96260421	96260680	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-80888	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
61546	chr13	60411701	60411980	+	0	NA	intron (NM_001146070, intron 1 of 13)	MER5A1|DNA|hAT-Charlie	14620	NM_001146070	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
90514	chr17	1466971	1467530	+	0	NA	exon (NM_001080950, exon 31 of 32)	exon (NM_001080950, exon 31 of 32)	-11018	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
17202	chr1	156253321	156253580	+	0	NA	exon (NM_001323615, exon 16 of 21)	exon (NM_001323615, exon 16 of 21)	-5333	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
125295	chr2	10537251	10537900	+	0	NA	Intergenic	Intergenic	87847	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
38577	chr11	46117671	46118230	+	0	NA	5' UTR (NM_001352032, exon 2 of 20)	5' UTR (NM_001352032, exon 2 of 20)	2869	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
160684	chr3	32285301	32285930	+	0	NA	intron (NM_001320308, intron 1 of 2)	L1MD2|LINE|L1	46935	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
62142	chr13	95723571	95723730	+	0	NA	intron (NM_006260, intron 3 of 11)	intron (NM_006260, intron 3 of 11)	46511	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
196294	chr6	43010321	43010580	+	0	NA	TTS (NM_014623)	TTS (NM_014623)	3496	NM_014623	4201		NM_014623	ENSG00000124733	MEA1	HYS|MEA	male-enhanced antigen 1	protein-coding
115024	chr19	14086871	14087430	+	0	NA	TTS (NM_138352)	TTS (NM_138352)	-1367	NM_001277378	646457		NM_001277378	ENSG00000188032	C19orf67	-	chromosome 19 open reading frame 67	protein-coding
233633	chrX	574451	574950	+	0	NA	Intergenic	Intergenic	-49644	NM_006883	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
131987	chr2	100335021	100335280	+	0	NA	Intergenic	Charlie10|DNA|hAT-Charlie	-12649	NM_198461	164832		NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
121064	chr19	45867371	45867530	+	0	NA	intron (NM_004497, intron 1 of 1)	(AGAT)n|Simple_repeat|Simple_repeat	3124	NM_004497	3171		NM_004497	ENSG00000170608	FOXA3	FKHH3|HNF3G|TCF3G	forkhead box A3	protein-coding
201989	chr6	152301571	152302530	+	0	NA	exon (NM_182961, exon 92 of 146)	exon (NM_182961, exon 92 of 146)	-78480	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
98698	chr17	47933321	47933580	+	0	NA	intron (NR_103857, intron 1 of 2)	intron (NR_103857, intron 1 of 2)	7954	NR_103857	100506325		NR_103856	ENSG00000234494	SP2-AS1	-	SP2 antisense RNA 1	ncRNA
68819	chr14	91263471	91263700	+	0	NA	Intergenic	Intergenic	-9705	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
44881	chr11	114340271	114340880	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	39464	NR_120567	101928940		NR_120567	ENSG00000256195	LOC101928940	-	uncharacterized LOC101928940	ncRNA
99431	chr17	50114821	50115380	+	0	NA	intron (NM_174920, intron 7 of 10)	MIRc|SINE|MIR	15060	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
191283	chr6	6580821	6581280	+	0	NA	intron (NR_026970, intron 1 of 7)	intron (NR_026970, intron 1 of 7)	-7670	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
123936	chr19	55375451	55376180	+	0	NA	Intergenic	Intergenic	-1011	NM_139172	147744		NM_139172	ENSG00000160472	TMEM190	MDAC1	transmembrane protein 190	protein-coding
194135	chr6	31974821	31975350	+	0	NA	intron (NM_004197, intron 2 of 6)	intron (NM_004197, intron 2 of 6)	2722	NM_004197	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
107659	chr18	48998071	48998700	+	0	NA	Intergenic	Intergenic	-25318	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
237657	chrX	124270571	124270730	+	0	NA	Intergenic	Intergenic	-62010	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
79673	chr16	1244051	1244350	+	0	NA	Intergenic	Intergenic	3495	NM_003294	7177		NM_003294	ENSG00000172236	TPSAB1	TPS1|TPS2|TPSB1|TPSB2|Tryptase-2	tryptase alpha/beta 1	protein-coding
191912	chr6	15434321	15435050	+	0	NA	intron (NM_001267040, intron 3 of 17)	MIRc|SINE|MIR	185830	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
26499	chr10	18203701	18204300	+	0	NA	intron (NM_201596, intron 2 of 13)	intron (NM_201596, intron 2 of 13)	-56722	NM_000724	783		NM_000724	ENSG00000165995	CACNB2	CAB2|CACNLB2|CAVB2|MYSB	calcium voltage-gated channel auxiliary subunit beta 2	protein-coding
220587	chr8	100861601	100862000	+	0	NA	Intergenic	LTR16C|LTR|ERVL	88771	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
8263	chr1	39816621	39817650	+	0	NA	Intergenic	MIR3|SINE|MIR	28159	NR_135805	101929536		NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
182627	chr5	66830001	66830200	+	0	NA	intron (NM_015183, intron 1 of 27)	intron (NM_015183, intron 1 of 27)	1327	NM_015183	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
166596	chr3	119218321	119218580	+	0	NA	intron (NM_212543, intron 7 of 8)	intron (NM_212543, intron 7 of 8)	-8036	NR_046574	100874201		NR_046574	ENSG00000240254	B4GALT4-AS1	-	B4GALT4 antisense RNA 1	ncRNA
34582	chr10	133243221	133243480	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	4270	NR_030170	574448		NR_030170	ENSG00000284219	MIR202	MIRN202|hsa-mir-202|mir-202	microRNA 202	ncRNA
213785	chr7	140779071	140779230	+	0	NA	intron (NM_001374244, intron 12 of 18)	L1ME3A|LINE|L1	-82073	NR_024454	100134713		NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
161339	chr3	40203271	40203430	+	0	NA	intron (NM_015460, intron 10 of 16)	intron (NM_015460, intron 10 of 16)	103339	NM_001284426	25924		NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
34318	chr10	132155251	132156330	+	0	NA	intron (NM_001323090, intron 19 of 23)	intron (NM_001323090, intron 19 of 23)	-31158	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
20503	chr1	198658601	198659780	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	20150	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
200051	chr6	129859571	129859730	+	0	NA	intron (NM_001010876, intron 1 of 4)	intron (NM_001010876, intron 1 of 4)	1665	NM_001010876	253582		NM_001010876	ENSG00000203756	TMEM244	C6orf191|bA174C7.4	transmembrane protein 244	protein-coding
152456	chr22	20696371	20696530	+	0	NA	Intergenic	Intergenic	-4664	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
110550	chr19	2101271	2101850	+	0	NA	3' UTR (NM_003938, exon 30 of 30)	3' UTR (NM_003938, exon 30 of 30)	4645	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
198213	chr6	98703551	98703650	+	0	NA	Intergenic	L1HS|LINE|L1	128100	NR_148381	105447646		NR_148381		PNKY	-	long intergenic non-protein coding RNA PNKY	ncRNA
237907	chrX	131802921	131803250	+	0	NA	intron (NR_026975, intron 3 of 12)	intron (NR_026975, intron 3 of 12)	27558	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
107909	chr18	57439121	57439580	+	0	NA	intron (NM_004852, intron 1 of 1)	CpG	3976	NM_004852	9480		NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
4407	chr1	21178521	21179330	+	0	NA	Intergenic	Intergenic	-2028	NM_001198802	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
6209	chr1	27473151	27474230	+	0	NA	intron (NM_006990, intron 1 of 8)	MER6A|DNA|TcMar-Tigger	16477	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
32892	chr10	110158471	110159080	+	0	NA	Intergenic	Intergenic	-6795	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
109457	chr19	773221	773680	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	22338	NR_135168	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
132102	chr2	101343301	101343500	+	0	NA	Intergenic	AluSx|SINE|Alu	33950	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
239459	chrY	56721001	56721750	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-232880	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
94647	chr17	30124121	30124580	+	0	NA	intron (NM_032141, intron 2 of 6)	intron (NM_032141, intron 2 of 6)	-7190	NR_036149	100423003		NR_036149	ENSG00000284399	MIR3184	-	microRNA 3184	ncRNA
32923	chr10	110224271	110224750	+	0	NA	intron (NM_001008541, intron 1 of 4)	MER20|DNA|hAT-Charlie	-1486	NM_005962	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
211153	chr7	102570421	102570950	+	0	NA	intron (NM_001097615, intron 1 of 8)	intron (NM_001097615, intron 1 of 8)	1936	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
51799	chr12	53385051	53385750	+	0	NA	intron (NM_138473, intron 3 of 5)	AluSc8|SINE|Alu	4756	NM_003109	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
55791	chr12	108633501	108634900	+	0	NA	promoter-TSS (NM_003006)	promoter-TSS (NM_003006)	-306	NM_003006	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
198982	chr6	110899171	110899550	+	0	NA	Intergenic	AluSz6|SINE|Alu	24576	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
169944	chr3	179069001	179069480	+	0	NA	5' UTR (NM_001375825, exon 1 of 6)	5' UTR (NM_001375825, exon 1 of 6)	102	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
171737	chr3	197959521	197960840	+	0	NA	promoter-TSS (NR_026786)	promoter-TSS (NR_026786)	-20	NM_001136049	89782		NM_033029	ENSG00000185621	LMLN	GP63|INV|IX14|LMNL1|MSP	leishmanolysin like peptidase	protein-coding
215076	chr7	154146871	154147030	+	0	NA	intron (NM_130797, intron 1 of 25)	intron (NM_130797, intron 1 of 25)	-86380	NR_136254	101929998		NR_136254		LOC101929998	-	uncharacterized LOC101929998	ncRNA
84330	chr16	30180651	30181330	+	0	NA	Intergenic	L3|LINE|CR1	-2420	NM_001193333	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
9916	chr1	54452971	54453530	+	0	NA	Intergenic	LTR33|LTR|ERVL	-46856	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
155648	chr22	38986671	38987400	+	0	NA	intron (NM_004900, intron 4 of 7)	intron (NM_004900, intron 4 of 7)	4688	NM_001270411	9582		NM_004900	ENSG00000179750	APOBEC3B	A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2	apolipoprotein B mRNA editing enzyme catalytic subunit 3B	protein-coding
185917	chr5	132827751	132828500	+	0	NA	intron (NM_001172700, intron 1 of 9)	intron (NM_001172700, intron 1 of 9)	-1815	NM_133456	134549		NM_133456	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
193351	chr6	30244571	30244750	+	0	NA	intron (NR_052012, intron 2 of 4)	intron (NR_052012, intron 2 of 4)	-14902	NR_027822	3139		NR_027822	ENSG00000291097	HLA-L	HLA-92|HLA92|HLAL	major histocompatibility complex, class I, L (pseudogene)	pseudo
96763	chr17	41718321	41718580	+	0	NA	intron (NM_001367462, intron 9 of 9)	intron (NM_001367462, intron 9 of 9)	6119	NM_000805	2520		NM_000805	ENSG00000184502	GAST	GAS	gastrin	protein-coding
33877	chr10	124418201	124419550	+	0	NA	promoter-TSS (NM_000274)	promoter-TSS (NM_000274)	48	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
216675	chr8	22152951	22153280	+	0	NA	intron (NM_139278, intron 5 of 7)	AluSq2|SINE|Alu	3691	NM_139278	203190		NM_139278	ENSG00000168481	LGI3	IDDMDS|LGIL4	leucine rich repeat LGI family member 3	protein-coding
56840	chr12	120241121	120241380	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	8913	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
80182	chr16	2125271	2125830	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-7569	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
173528	chr4	9890421	9890500	+	0	NA	intron (NM_020041, intron 9 of 11)	intron (NM_020041, intron 9 of 11)	108826	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
16414	chr1	154492171	154492680	+	0	NA	intron (NR_135169, intron 2 of 5)	intron (NR_135169, intron 2 of 5)	-9794	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
212128	chr7	116235701	116236260	+	0	NA	intron (NM_015641, intron 2 of 6)	intron (NM_015641, intron 2 of 6)	13027	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
197833	chr6	87925201	87925800	+	0	NA	Intergenic	Intergenic	-122341	NM_030960	81833		NM_030960	ENSG00000118434	SPACA1	SAMP32|SPGF85	sperm acrosome associated 1	protein-coding
4097	chr1	19214751	19215050	+	0	NA	TTS (NM_001271427)	TTS (NM_001271427)	4514	NR_135115	101927895		NR_135114	ENSG00000230424	EMC1-AS1	-	EMC1 antisense RNA 1	ncRNA
178639	chr4	152348751	152348930	+	0	NA	intron (NM_033632, intron 3 of 11)	intron (NM_033632, intron 3 of 11)	3986	NM_018315	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
140457	chr2	233164771	233165280	+	0	NA	intron (NM_001017915, intron 13 of 26).2	intron (NM_001017915, intron 13 of 26).2	-86546	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
55982	chr12	110149301	110149700	+	0	NA	intron (NM_001347946, intron 10 of 11)	LTR1A2|LTR|ERV1	25143	NR_144951	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
146228	chr20	48805651	48805980	+	0	NA	intron (NM_020820, intron 1 of 39)	MIR3|SINE|MIR	22184	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
90135	chr17	113121	113630	+	0	NA	Intergenic	(ACCCTA)n|Simple_repeat|Simple_repeat	-24194	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
63519	chr13	114313871	114316180	+	0	NA	intron (NM_001164145, intron 1 of 2)	L1MB8|LINE|L1	522	NM_001164144	283489		NM_032436	ENSG00000198824	CHAMP1	C13orf8|CAMP|CHAMP|MRD40|NEDHILD|ZNF828	chromosome alignment maintaining phosphoprotein 1	protein-coding
207002	chr7	38349721	38350400	+	0	NA	intron (NR_040085, intron 2 of 3)	intron (NR_040085, intron 2 of 3)	8483	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
1324	chr1	2414221	2415030	+	0	NA	promoter-TSS (NM_001374426)	promoter-TSS (NM_001374426)	-798	NM_001374427	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
149732	chr21	34351621	34351980	+	0	NA	Intergenic	Intergenic	-12206	NM_172201	9992		NM_005136	ENSG00000159197	KCNE2	ATFB4|LQT5|LQT6|MIRP1	potassium voltage-gated channel subfamily E regulatory subunit 2	protein-coding
81685	chr16	11218521	11218780	+	0	NA	Intergenic	Intergenic	37532	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
18068	chr1	160643751	160643950	+	0	NA	intron (NR_104400, intron 1 of 4)	L1MA4|LINE|L1	3194	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
104420	chr17	81066551	81067130	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	9106	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
154224	chr22	31530071	31530800	+	0	NA	intron (NM_001258325, intron 3 of 30)	AluY|SINE|Alu	33899	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
44206	chr11	96298351	96298650	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-42938	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
183893	chr5	87364501	87364700	+	0	NA	intron (NM_022650, intron 11 of 24)	intron (NM_022650, intron 11 of 24)	-40972	NR_130929	644285		NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
22252	chr1	212619321	212619980	+	0	NA	3' UTR (NM_001030287, exon 4 of 4)	3' UTR (NM_001030287, exon 4 of 4)	4632	NM_001206486	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
129394	chr2	68827451	68827750	+	0	NA	TTS (NM_001166276)	TTS (NM_001166276)	43797	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
145855	chr20	45894721	45895380	+	0	NA	exon (NM_000308, exon 11 of 15)	exon (NM_000308, exon 11 of 15)	3715	NM_000308	5476		NM_000308	ENSG00000064601	CTSA	GLB2|GSL|NGBE|PPCA|PPGB	cathepsin A	protein-coding
121408	chr19	46967371	46968000	+	0	NA	intron (NM_004491, intron 3 of 6)	L2c|LINE|L2	-52152	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
235575	chrX	47483951	47484050	+	0	NA	promoter-TSS (NM_001324152)	promoter-TSS (NM_001324152)	-731	NM_001324145	7592		NM_007130	ENSG00000147124	ZNF41	MRX89	zinc finger protein 41	protein-coding
128605	chr2	61016941	61018380	+	0	NA	promoter-TSS (NM_001322124)	promoter-TSS (NM_001322124)	-60	NM_002618	5194		NM_002618	ENSG00000162928	PEX13	NALD|PBD11A|PBD11B|ZWS	peroxisomal biogenesis factor 13	protein-coding
2058	chr1	7913101	7913600	+	0	NA	Intergenic	LTR36|LTR|ERV1	27489	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
91632	chr17	5417351	5417700	+	0	NA	intron (NM_002532, intron 1 of 16)	L2c|LINE|L2	-2116	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
78537	chr15	92959371	92959880	+	0	NA	intron (NM_001271, intron 16 of 38)	AluSz|SINE|Alu	55226	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
48836	chr12	12360051	12361630	+	0	NA	intron (NM_001330356, intron 1 of 2)	AluSx1|SINE|Alu	3762	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
141723	chr2	241856671	241856980	+	0	NA	intron (NM_005018, intron 1 of 4)	AluJb|SINE|Alu	2069	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
122884	chr19	50510521	50512350	+	0	NA	promoter-TSS (NM_001270639)	promoter-TSS (NM_001270639)	-80	NM_001270640	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
125413	chr2	11746171	11747250	+	0	NA	promoter-TSS (NM_001349202)	promoter-TSS (NM_001349202)	78	NM_001349201	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
193678	chr6	31067951	31068280	+	0	NA	Intergenic	(GGGAGA)n|Simple_repeat|Simple_repeat	14665	NR_003948	285834		NM_001348249	ENSG00000228789	HCG22	PBMUCL2	HLA complex group 22 (non-protein coding)	ncRNA
22434	chr1	220270471	220270630	+	0	NA	intron (NM_012414, intron 1 of 34)	L2c|LINE|L2	1903	NM_012414	25782		NM_012414	ENSG00000118873	RAB3GAP2	MARTS1|RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150	RAB3 GTPase activating non-catalytic protein subunit 2	protein-coding
128955	chr2	64625271	64625780	+	0	NA	Intergenic	Intergenic	18213	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
124015	chr19	55473401	55474200	+	0	NA	Intergenic	Intergenic	-2817	NM_033113	89887		NM_033113	ENSG00000197483	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
68443	chr14	81511071	81511300	+	0	NA	intron (NM_005065, intron 3 of 20)	intron (NM_005065, intron 3 of 20)	22668	NM_005065	6400		NM_005065	ENSG00000071537	SEL1L	Hrd3|PRO1063|SEL1-LIKE|SEL1L1	SEL1L adaptor subunit of SYVN1 ubiquitin ligase	protein-coding
145961	chr20	46246751	46246850	+	0	NA	intron (NM_021248, intron 2 of 11)	CpG	61698	NM_021248	64405		NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding
19642	chr1	180213501	180214130	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-16449	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
47472	chr12	3897121	3898580	+	0	NA	Intergenic	L3|LINE|CR1	-24402	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
92256	chr17	7991471	7991900	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-10930	NM_000180	3000		NM_000180	ENSG00000132518	GUCY2D	CACD|CACD1|CG-E|CORD5|CORD6|CSNB1I|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding
100732	chr17	63903801	63904530	+	0	NA	Intergenic	Intergenic	7093	NM_001321068	1444		NM_001318	ENSG00000204414	CSHL1	CS-5|CSHP1|CSL|GHB4|hCS-L	chorionic somatomammotropin hormone like 1	protein-coding
169022	chr3	152457921	152458250	+	0	NA	non-coding (NR_164861, exon 9 of 11)	non-coding (NR_164861, exon 9 of 11)	-117095	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
143190	chr20	24808601	24808950	+	0	NA	Intergenic	Intergenic	-140494	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
176372	chr4	88591051	88591150	+	0	NA	intron (NM_001375482, intron 1 of 24)	AluSz|SINE|Alu	-1380	NM_001375478	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
235462	chrX	46574901	46575500	+	0	NA	exon (NM_019886, exon 1 of 2)	exon (NM_019886, exon 1 of 2)	1435	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
196788	chr6	45677221	45678230	+	0	NA	Intergenic	Intergenic	255450	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
166568	chr3	115790921	115791330	+	0	NA	Intergenic	Intergenic	114001	NR_145779	109623450		NR_145779		SNORD155	-	small nucleolar RNA, C/D box 155	snoRNA
15813	chr1	151295901	151296100	+	0	NA	intron (NM_001369628, intron 9 of 12)	AluSx|SINE|Alu	13701	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
53862	chr12	70049671	70050430	+	0	NA	Intergenic	Intergenic	-192980	NM_001199302	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
3657	chr1	16406621	16407080	+	0	NA	intron (NM_001353349, intron 5 of 10)	MLT1B|LTR|ERVL-MaLR	30574	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
54612	chr12	92558751	92559150	+	0	NA	Intergenic	Intergenic	92271	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
132474	chr2	105889751	105890130	+	0	NA	intron (NM_001004720, intron 3 of 3)	MER5A|DNA|hAT-Charlie	38093	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
72159	chr15	29112101	29112300	+	0	NA	intron (NM_001353793, intron 11 of 12).2	intron (NM_001353793, intron 11 of 12).2	41542	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
163712	chr3	52285751	52286100	+	0	NA	Intergenic	AluSz|SINE|Alu	-1895	NM_001144951	132158		NM_145262	ENSG00000168237	GLYCTK	HBEBP2|HBEBP4|HBeAgBP4A	glycerate kinase	protein-coding
46082	chr11	122833971	122834330	+	0	NA	Intergenic	Charlie15b|DNA|hAT-Charlie	-4350	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
220806	chr8	102738201	102738880	+	0	NA	Intergenic	Intergenic	-68282	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
217248	chr8	27296451	27297150	+	0	NA	intron (NM_001304495, intron 1 of 3)	intron (NM_001304495, intron 1 of 3)	14472	NM_001362813	23087		NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
142758	chr20	10501251	10501630	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	66135	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
206123	chr7	27368051	27368350	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-120971	NR_120507	101410536		NR_120507	ENSG00000253405	EVX1-AS	EVX1-AS1|EVX1AS	EVX1 antisense RNA	ncRNA
141624	chr2	241686481	241687980	+	0	NA	promoter-TSS (NM_001165031)	promoter-TSS (NM_001165031)	210	NM_001330161	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
128861	chr2	63993821	63994200	+	0	NA	intron (NM_016516, intron 1 of 22)	HERVK11-int|LTR|ERVK	25418	NM_016516	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
102862	chr17	76500051	76500490	+	0	NA	intron (NR_164786, intron 1 of 19)	MER20|DNA|hAT-Charlie	1153	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
21636	chr1	206610551	206611050	+	0	NA	intron (NM_001201478, intron 2 of 12)	AluY|SINE|Alu	1665	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
178701	chr4	152584551	152585450	+	0	NA	Intergenic	Intergenic	48572	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
89566	chr16	89256551	89257980	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-38863	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
113111	chr19	8296551	8297770	+	0	NA	Intergenic	Intergenic	11198	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
205874	chr7	25047271	25047770	+	0	NA	Intergenic	L1HS|LINE|L1	-67342	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
153191	chr22	23846851	23847150	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-7994	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
221139	chr8	118743571	118743830	+	0	NA	Intergenic	Intergenic	-121737	NM_001349811	401474		NM_207506	ENSG00000177570	SAMD12	BAFME|BAFME1|FAME|FAME1|FCMTE1|MEBA	sterile alpha motif domain containing 12	protein-coding
161033	chr3	37995601	37996100	+	0	NA	intron (NM_015873, intron 5 of 19)	intron (NM_015873, intron 5 of 19)	1712	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
155960	chr22	39751351	39751450	+	0	NA	intron (NM_152512, intron 6 of 6)	intron (NM_152512, intron 6 of 6)	142360	NM_152512	150350		NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
203706	chr7	1046001	1046200	+	0	NA	intron (NM_001303473, intron 1 of 1)	intron (NM_001303473, intron 1 of 1)	1554	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
10289	chr1	64844901	64845750	+	0	NA	intron (NM_001321857, intron 15 of 24)	intron (NM_001321857, intron 15 of 24)	100250	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
13	chr1	24401	24800	+	0	NA	intron (NR_024540, intron 2 of 10)	intron (NR_024540, intron 2 of 10)	4770	NR_024540	653635		NR_024540		WASH7P	FAM39F|WASH5P	WASP family homolog 7, pseudogene	pseudo
216392	chr8	17929451	17929750	+	0	NA	intron (NR_148032, intron 2 of 38)	intron (NR_148032, intron 2 of 38)	6612	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
181324	chr5	40383701	40384830	+	0	NA	Intergenic	MER6B|DNA|TcMar-Tigger	-295650	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
102998	chr17	76754921	76755700	+	0	NA	intron (NR_148239, intron 8 of 12)	intron (NR_148239, intron 8 of 12)	17632	NM_001242532	79157		NM_024311	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
90353	chr17	1203101	1204050	+	0	NA	intron (NM_001322841, intron 1 of 22)	CpG	-16303	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
152571	chr22	21116601	21117180	+	0	NA	intron (NR_037566, intron 2 of 5)	intron (NR_037566, intron 2 of 5)	13874	NR_037566	400892		NM_207474	ENSG00000291044	BCRP2	BCR-2|BCR2|BCRL2	BCR pseudogene 2	pseudo
144825	chr20	36835251	36837500	+	0	NA	intron (NM_080627, intron 2 of 14)	AluSx|SINE|Alu	23498	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
60783	chr13	45299921	45300180	+	0	NA	Intergenic	AluJb|SINE|Alu	36397	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
39513	chr11	61069471	61069830	+	0	NA	Intergenic	Intergenic	-24313	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
188249	chr5	151067221	151067780	+	0	NA	intron (NM_001252390, intron 1 of 17)	intron (NM_001252390, intron 1 of 17)	-2369	NM_001258456	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
96051	chr17	39466371	39466830	+	0	NA	intron (NM_016507, intron 1 of 13)	AluSp|SINE|Alu	5114	NM_015083	51755		NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding
105450	chr17	82984051	82984730	+	0	NA	intron (NR_135465, intron 6 of 13)	intron (NR_135465, intron 6 of 13)	22598	NR_135466	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
198886	chr6	109478651	109479300	+	0	NA	intron (NM_014797, intron 2 of 6)	HAL1|LINE|L1	4244	NM_014797	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
53202	chr12	62263751	62264250	+	0	NA	intron (NM_001351164, intron 1 of 21)	intron (NM_001351164, intron 1 of 21)	3596	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
155254	chr22	37983721	37983980	+	0	NA	5' UTR (NM_006941, exon 2 of 4)	5' UTR (NM_006941, exon 2 of 4)	705	NM_006941	6663		NM_006941	ENSG00000100146	SOX10	DOM|PCWH|SOX-10|WS2E|WS4|WS4C	SRY-box transcription factor 10	protein-coding
23549	chr1	229270861	229272400	+	0	NA	promoter-TSS (NR_149312)	promoter-TSS (NR_149312)	-476	NR_149313	105373159		NR_149312	ENSG00000177788	RAB4A-AS1	-	RAB4A antisense RNA 1	ncRNA
191531	chr6	11385421	11385680	+	0	NA	Intergenic	Intergenic	-3202	NR_073131	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
95887	chr17	38881501	38882100	+	0	NA	intron (NM_001271608, intron 2 of 5)	intron (NM_001271608, intron 2 of 5)	11742	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
123832	chr19	55223151	55223250	+	0	NA	Intergenic	MER70A|LTR|ERVL	5563	NM_001372013	255043		NM_173804	ENSG00000180089	TMEM86B	-	transmembrane protein 86B	protein-coding
10938	chr1	84154571	84154930	+	0	NA	intron (NM_182948, intron 1 of 9)	L1M3|LINE|L1	-9434	NM_001242857	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
187820	chr5	146764951	146765650	+	0	NA	intron (NM_001271899, intron 2 of 9)	intron (NM_001271899, intron 2 of 9)	113457	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
227739	chr9	93071471	93072430	+	0	NA	intron (NM_001287005, intron 2 of 5)	MIR|SINE|MIR	13249	NM_001287007	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
142570	chr20	5315621	5316080	+	0	NA	intron (NM_144773, intron 1 of 2)	CpG	1104	NM_144773	128674		NM_144773	ENSG00000101292	PROKR2	GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3	prokineticin receptor 2	protein-coding
191816	chr6	14664051	14664650	+	0	NA	Intergenic	Intergenic	-378896	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
232850	chr9	136786501	136786700	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-4744	NM_032928	85014		NM_032928	ENSG00000244187	TMEM141	-	transmembrane protein 141	protein-coding
175068	chr4	54058021	54058900	+	0	NA	intron (NM_012110, intron 1 of 5)	intron (NM_012110, intron 1 of 5)	6145	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
61278	chr13	50122321	50122730	+	0	NA	intron (NR_109974, intron 2 of 6)	L2|LINE|L2	3016	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
137048	chr2	190884571	190884730	+	0	NA	intron (NM_014905, intron 1 of 17)	intron (NM_014905, intron 1 of 17)	3829	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
81184	chr16	4473851	4474950	+	0	NA	promoter-TSS (NM_001127206)	promoter-TSS (NM_001127206)	225	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
44866	chr11	114185551	114185650	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	-72206	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
169208	chr3	156978551	156978880	+	0	NA	intron (NM_001004316, intron 6 of 12)	intron (NM_001004316, intron 6 of 12)	-103126	NR_135546	105374177		NR_135546	ENSG00000241544	LINC02029	-	long intergenic non-protein coding RNA 2029	ncRNA
43616	chr11	83184971	83185130	+	0	NA	TTS (NR_133914)	TTS (NR_133914)	2434	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
115879	chr19	16569821	16570080	+	0	NA	intron (NM_024881, intron 2 of 5)	intron (NM_024881, intron 2 of 5)	2465	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
74567	chr15	60537121	60537700	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	55116	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
120303	chr19	43474351	43474450	+	0	NA	TTS (NM_198850)	TTS (NM_198850)	-8792	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
78952	chr15	101291871	101292430	+	0	NA	intron (NM_003090, intron 2 of 8)	intron (NM_003090, intron 2 of 8)	3098	NR_135506	6627		NM_003090	ENSG00000131876	SNRPA1	Lea1|U2A'	small nuclear ribonucleoprotein polypeptide A'	protein-coding
122005	chr19	48590371	48590530	+	0	NA	intron (NM_177973, intron 3 of 6)	AluSz|SINE|Alu	14714	NM_004605	6820		NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
163559	chr3	51734471	51734830	+	0	NA	Intergenic	L1MCa|LINE|L1	27582	NM_001349117	2912		NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate metabotropic receptor 2	protein-coding
60821	chr13	45366451	45366550	+	0	NA	intron (NR_024458, intron 3 of 10)	AluSx1|SINE|Alu	25155	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
47575	chr12	4526701	4527180	+	0	NA	intron (NR_144380, intron 4 of 10)	intron (NR_144380, intron 4 of 10)	11529	NM_020374	57102		NM_020374	ENSG00000047621	FERRY3	C12orf4|Fy-3|MRT66	FERRY endosomal RAB5 effector complex subunit 3	protein-coding
5960	chr1	26903001	26903200	+	0	NA	Intergenic	MER92B|LTR|ERV1	-2633	NM_022078	63906		NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
83329	chr16	24771221	24771480	+	0	NA	intron (NM_001330520, intron 4 of 23)	MIR|SINE|MIR	41699	NM_014494	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
189910	chr5	177362501	177363850	+	0	NA	intron (NM_006480, intron 1 of 14)	CpG	5251	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
147123	chr20	54078321	54078880	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-7835	NM_003657	8537		NM_003657	ENSG00000064787	BCAS1	AIBC1|NABC1|PMES-2	brain enriched myelin associated protein 1	protein-coding
170035	chr3	181712371	181712530	+	0	NA	exon (NM_003106, exon 1 of 1)	exon (NM_003106, exon 1 of 1)	525	NM_003106	6657		NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box transcription factor 2	protein-coding
13374	chr1	113907321	113907580	+	0	NA	intron (NM_022836, intron 2 of 3)	intron (NM_022836, intron 2 of 3)	2124	NM_022836	64858		NM_022836	ENSG00000118655	DCLRE1B	APOLLO|DKCB8|SNM1B|SNMIB	DNA cross-link repair 1B	protein-coding
112477	chr19	6413451	6413550	+	0	NA	3' UTR (NM_001366299, exon 19 of 19)	3' UTR (NM_001366299, exon 19 of 19)	3011	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
15943	chr1	151828221	151828680	+	0	NA	intron (NM_005060, intron 2 of 10)	intron (NM_005060, intron 2 of 10)	-2354	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
14038	chr1	120746521	120746880	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	22761	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
67885	chr14	74362321	74362780	+	0	NA	Intergenic	Intergenic	14079	NM_018228	55237		NM_018228	ENSG00000133980	VRTN	C14orf115|vertnin	vertebrae development associated	protein-coding
202148	chr6	155170971	155172530	+	0	NA	intron (NM_001384547, intron 8 of 25)	intron (NM_001384547, intron 8 of 25)	-45216	NM_001010927	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
87307	chr16	70174271	70175080	+	0	NA	intron (NM_173619, intron 2 of 12)	intron (NM_173619, intron 2 of 12)	888	NM_173619	283971		NM_173619	ENSG00000157335	CLEC18C	MRCL|MRCL3	C-type lectin domain family 18 member C	protein-coding
164363	chr3	58115771	58117100	+	0	NA	intron (NM_001164319, intron 18 of 44)	intron (NM_001164319, intron 18 of 44)	54200	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
239325	chrY	18378301	18378500	+	0	NA	Intergenic	L1MA2|LINE|L1	26646	NR_028084	100302526		NR_028084		FAM41AY2	-	family with sequence similarity 41 member A, Y-linked 2	ncRNA
79900	chr16	1610171	1611290	+	0	NA	TTS (NR_135176)	TTS (NR_135176)	1342	NM_014714	9742		NM_014714	ENSG00000187535	IFT140	MZSDS|RP80|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114	intraflagellar transport 140	protein-coding
45010	chr11	117004901	117005100	+	0	NA	intron (NM_001281748, intron 1 of 24)	MIR3|SINE|MIR	93428	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
60128	chr13	39037551	39038980	+	0	NA	promoter-TSS (NR_073109)	promoter-TSS (NR_073109)	-46	NR_073109	387921		NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
172333	chr4	1691251	1691550	+	0	NA	Intergenic	AluSx|SINE|Alu	-7087	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
34485	chr10	132534901	132535500	+	0	NA	intron (NR_158224, intron 1 of 3)	(TGTGCA)n|Simple_repeat|Simple_repeat	1723	NR_158224	107984282		NR_158224		LOC107984282	-	uncharacterized LOC107984282	ncRNA
161500	chr3	42536271	42537050	+	0	NA	3' UTR (NM_001251882, exon 14 of 14)	3' UTR (NM_001251882, exon 14 of 14)	-4054	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
93967	chr17	21550921	21551930	+	0	NA	non-coding (NR_160801, exon 1 of 2)	non-coding (NR_160801, exon 1 of 2)	253	NR_160801	339263		NM_001113434	ENSG00000212719	LINC02693	C17orf51	long intergenic non-protein coding RNA 2693	ncRNA
116993	chr19	18893251	18893580	+	0	NA	intron (NM_021267, intron 2 of 7)	intron (NM_021267, intron 2 of 7)	2743	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
156913	chr22	42272901	42273330	+	0	NA	intron (NR_036498, intron 1 of 1)	AluSq2|SINE|Alu	-2462	NM_181492	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
108157	chr18	62702301	62702500	+	0	NA	Intergenic	Intergenic	-13141	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
238159	chrX	136784201	136784530	+	0	NA	Intergenic	LTR41|LTR|ERVL	-3433	NM_004840	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
88395	chr16	84621771	84623130	+	0	NA	Intergenic	Intergenic	-4372	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
227951	chr9	94726321	94727330	+	0	NA	intron (NM_001193331, intron 1 of 7)	CpG	126	NM_001193331	84909		NM_032823	ENSG00000148120	AOPEP	AP-O|APO|C90RF3|C9orf3|DYT31|ONPEP	aminopeptidase O (putative)	protein-coding
27985	chr10	42988951	42989250	+	0	NA	Intergenic	Intergenic	-7593	NR_126352	104266963		NR_126352	ENSG00000229630	LINC01264	-	long intergenic non-protein coding RNA 1264	ncRNA
217904	chr8	37893401	37894300	+	0	NA	intron (NM_025151, intron 1 of 4)	intron (NM_025151, intron 1 of 4)	5647	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
40680	chr11	64763901	64765020	+	0	NA	TTS (NM_001346363)	TTS (NM_001346363)	-3745	NM_001164716	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
6070	chr1	27149421	27150080	+	0	NA	intron (NM_003047, intron 1 of 11)	MIRc|SINE|MIR	5375	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
120009	chr19	41933671	41934130	+	0	NA	Intergenic	Intergenic	5080	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
156282	chr22	40459071	40459630	+	0	NA	intron (NM_001282661, intron 4 of 13)	intron (NM_001282661, intron 4 of 13)	4090	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
176695	chr4	101015621	101016330	+	0	NA	Intergenic	LTR40a|LTR|ERVL	224897	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
114440	chr19	12696101	12697350	+	0	NA	promoter-TSS (NM_032301)	promoter-TSS (NM_032301)	-94	NM_032301	84261		NM_032301	ENSG00000132004	FBXW9	Fbw9|MEC-15	F-box and WD repeat domain containing 9	protein-coding
75972	chr15	70503301	70503850	+	0	NA	TTS (NR_146562)	TTS (NR_146562)	2353	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
167016	chr3	126198051	126198450	+	0	NA	intron (NR_046383, intron 1 of 1)	intron (NR_046383, intron 1 of 1)	-17064	NM_001270364	10840		NM_012190	ENSG00000144908	ALDH1L1	10-FTHFDH|10-fTHF|FDH|FTHFD	aldehyde dehydrogenase 1 family member L1	protein-coding
172039	chr4	1002051	1002750	+	0	NA	exon (NM_000203, exon 8 of 14)	exon (NM_000203, exon 8 of 14)	2690	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
224163	chr9	4984371	4986150	+	0	NA	promoter-TSS (NM_004972)	promoter-TSS (NM_004972)	-12	NM_004972	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
32501	chr10	102729051	102729730	+	0	NA	exon (NM_001350989, exon 6 of 13)	exon (NM_001350989, exon 6 of 13)	-14558	NM_001083913	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
150326	chr21	42059021	42059480	+	0	NA	Intergenic	Intergenic	-3627	NM_001199527	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
88360	chr16	84578921	84579180	+	0	NA	intron (NM_021149, intron 3 of 3)	intron (NM_021149, intron 3 of 3)	39028	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
164069	chr3	53888901	53889500	+	0	NA	intron (NM_021237, intron 1 of 4)	L1MB3|LINE|L1	2659	NM_021237	58515		NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
217654	chr8	30080921	30081370	+	0	NA	intron (NM_016127, intron 1 of 5)	AluSp|SINE|Alu	1919	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
227601	chr9	92711801	92712200	+	0	NA	3' UTR (NM_015250, exon 8 of 8)	3' UTR (NM_015250, exon 8 of 8)	-41869	NM_022755	64768		NM_022755	ENSG00000127080	IPPK	C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1	inositol-pentakisphosphate 2-kinase	protein-coding
71309	chr14	105350551	105351050	+	0	NA	intron (NM_001243127, intron 2 of 23)	LTR16B|LTR|ERVL	-35223	NM_001242787	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
20921	chr1	202191301	202191700	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-2490	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
75301	chr15	65217571	65217900	+	0	NA	Intergenic	Intergenic	-6262	NM_003613	8483		NM_003613	ENSG00000138615	CILP	CILP-1|CILP1|HsT18872	cartilage intermediate layer protein	protein-coding
90634	chr17	1656901	1657100	+	0	NA	intron (NM_006445, intron 34 of 42)	intron (NM_006445, intron 34 of 42)	-7134	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
144547	chr20	35727501	35728080	+	0	NA	intron (NM_184234, intron 6 of 16)	AluSq2|SINE|Alu	14470	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
220902	chr8	106617801	106618030	+	0	NA	intron (NM_001198532, intron 2 of 15)	intron (NM_001198532, intron 2 of 15)	-39893	NM_181354	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
227865	chr9	93600501	93601250	+	0	NA	intron (NM_005392, intron 1 of 21)	5S|rRNA|rRNA	6034	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
7661	chr1	35703771	35704130	+	0	NA	Intergenic	AluSz6|SINE|Alu	12961	NM_001348691	127703		NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
102966	chr17	76710501	76711530	+	0	NA	promoter-TSS (NM_198530)	promoter-TSS (NM_198530)	-50	NM_001008529	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
131935	chr2	99139801	99140080	+	0	NA	intron (NM_025244, intron 1 of 20)	intron (NM_025244, intron 1 of 20)	1240	NR_146001	80705		NM_025244	ENSG00000135951	TSGA10	CEP4L|CT79|SPGF26	testis specific 10	protein-coding
126460	chr2	28354971	28355130	+	0	NA	Intergenic	Intergenic	-37808	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
159967	chr3	17704651	17705480	+	0	NA	intron (NM_001349076, intron 1 of 22)	SVA_F|Retroposon|SVA	-5045	NM_001134381	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
188027	chr5	149647671	149647930	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	66302	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
134112	chr2	134119501	134120500	+	0	NA	promoter-TSS (NM_001371457)	promoter-TSS (NM_001371457)	65	NM_001371457	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
589	chr1	1287621	1287880	+	0	NA	non-coding (NR_037668, exon 10 of 17)	non-coding (NR_037668, exon 10 of 17)	7314	NM_001130413	6339		NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	sodium channel epithelial 1 subunit delta	protein-coding
59683	chr13	29232251	29232350	+	0	NA	intron (NM_001384606, intron 4 of 14)	(CA)n|Simple_repeat|Simple_repeat	-196360	NM_015233	23281		NM_015233	ENSG00000132938	MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated scaffold protein 2	protein-coding
28413	chr10	47756001	47756580	+	0	NA	intron (NM_031912, intron 6 of 7).2	intron (NM_031912, intron 6 of 7).2	6391	NM_181519	83849		NM_031912	ENSG00000204176	SYT15	CHR10SYT|SYT15B|sytXV	synaptotagmin 15	protein-coding
135276	chr2	159875201	159875780	+	0	NA	exon (NM_002349, exon 12 of 35)	exon (NM_002349, exon 12 of 35)	29266	NM_002349	4065		NM_002349	ENSG00000054219	LY75	CD205|CLEC13B|DEC-205|GP200-MR6|LY-75	lymphocyte antigen 75	protein-coding
182771	chr5	68343471	68343850	+	0	NA	Intergenic	Intergenic	51083	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
220652	chr8	101117651	101118350	+	0	NA	Intergenic	MIRb|SINE|MIR	52239	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
56910	chr12	120370951	120371250	+	0	NA	Intergenic	Intergenic	-1936	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
177137	chr4	108116651	108117580	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	49682	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
36143	chr11	3130721	3130980	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	34460	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
198507	chr6	106510121	106510960	+	0	NA	intron (NM_001371242, intron 2 of 21)	CpG	-1315	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
217753	chr8	30811871	30813100	+	0	NA	5' UTR (NM_001009552, exon 1 of 7)	5' UTR (NM_001009552, exon 1 of 7)	333	NM_001009552	5516		NM_004156	ENSG00000104695	PPP2CB	PP2Abeta|PP2CB	protein phosphatase 2 catalytic subunit beta	protein-coding
142243	chr20	3135351	3135450	+	0	NA	intron (NM_199415, intron 1 of 3)	intron (NM_199415, intron 1 of 3)	24465	NM_014948	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
24021	chr1	235266571	235267230	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-60316	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
175096	chr4	54217721	54218100	+	0	NA	Intergenic	Intergenic	-11383	NM_001347828	5156		NM_006206	ENSG00000134853	PDGFRA	CD140A|PDGFR-2|PDGFR2	platelet derived growth factor receptor alpha	protein-coding
126791	chr2	30315371	30316200	+	0	NA	Intergenic	MamTip3|DNA|hAT-Tip100	-30861	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
142327	chr20	3673471	3673630	+	0	NA	intron (NM_025220, intron 10 of 21)	CpG-17401	8460	NM_001282447	80332		NM_025220	ENSG00000149451	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
146002	chr20	46485871	46486030	+	0	NA	Intergenic	Intergenic	-20658	NR_026640	7686		NR_026640	ENSG00000225849	MKRN7P	MKRNP3|ZNF127L5|dJ981L23.2	makorin ring finger protein 7, pseudogene	pseudo
207228	chr7	43680601	43680800	+	0	NA	intron (NM_001321199, intron 1 of 6)	AluJb|SINE|Alu	48823	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
87936	chr16	79362771	79363130	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	237787	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
3974	chr1	18828201	18828600	+	0	NA	Intergenic	Intergenic	31260	NM_152232	80834		NM_152232	ENSG00000179002	TAS1R2	GPR71|T1R2|TR2	taste 1 receptor member 2	protein-coding
216143	chr8	11492121	11492530	+	0	NA	Intergenic	Intergenic	-2062	NM_001715	640		NM_001715	ENSG00000136573	BLK	MODY11	BLK proto-oncogene, Src family tyrosine kinase	protein-coding
110778	chr19	2426941	2428900	+	0	NA	promoter-TSS (NM_012458)	promoter-TSS (NM_012458)	-334	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
237582	chrX	123765021	123765980	+	0	NA	Intergenic	Intergenic	-32448	NM_001081550	57187		NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|XLID12|dJ506G2.1|hTREX120	THO complex subunit 2	protein-coding
66893	chr14	65206601	65207400	+	0	NA	Intergenic	Intergenic	15347	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
173153	chr4	6679401	6679600	+	0	NA	Intergenic	Intergenic	5425	NR_015433								
213737	chr7	140390621	140391200	+	0	NA	intron (NM_032295, intron 1 of 11)	L2a|LINE|L2	7620	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
94852	chr17	31500171	31500330	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	12142	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
66922	chr14	65412101	65414030	+	0	NA	promoter-TSS (NR_024334)	promoter-TSS (NR_024334)	335	NM_001371533	2530		NM_004480	ENSG00000033170	FUT8	CDGF|CDGF1	fucosyltransferase 8	protein-coding
9029	chr1	44775251	44777350	+	0	NA	promoter-TSS (NR_000024)	promoter-TSS (NR_000024)	-192	NR_000024	94161		NR_000024	ENSG00000200913	SNORD46	RNU40|RNU46|U40|U46	small nucleolar RNA, C/D box 46	snoRNA
105922	chr18	3459501	3459700	+	0	NA	3' UTR (NM_001278686, exon 4 of 4)	3' UTR (NM_001278686, exon 4 of 4)	5826	NM_173211	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
99230	chr17	49667921	49668180	+	0	NA	5' UTR (NM_001007230, exon 2 of 12)	5' UTR (NM_001007230, exon 2 of 12)	10047	NM_001007228	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
17862	chr1	159934071	159934430	+	0	NA	exon (NM_020789, exon 9 of 21)	exon (NM_020789, exon 9 of 21)	-8743	NM_003564	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
63639	chr14	20855701	20856000	+	0	NA	Intergenic	Intergenic	-35553	NM_002935	6037		NM_002935	ENSG00000169397	RNASE3	ECP|RAF1|RNS3	ribonuclease A family member 3	protein-coding
171785	chr4	329951	330290	+	0	NA	Intergenic	LTR13|LTR|ERVK	-7694	NM_001348280	7700		NM_003441	ENSG00000131127	ZNF141	D4S90|pHZ-44	zinc finger protein 141	protein-coding
152820	chr22	21865151	21865600	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	2270	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
214257	chr7	148941801	148942780	+	0	NA	TTS (NR_001571)	TTS (NR_001571)	802	NR_001571	6090		NR_001571		RNY5	Y5|hY5	RNA, Ro60-associated Y5	ncRNA
98404	chr17	46581971	46582130	+	0	NA	Intergenic	LTR26C|LTR|ERV1	-2328	NM_001288811	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
194187	chr6	32127471	32128660	+	0	NA	TTS (NM_022110).3	TTS (NM_022110).3	181	NM_004381	1388		NM_004381	ENSG00000213676	ATF6B	ATF6beta|CREB-RP|CREBL1|G13	activating transcription factor 6 beta	protein-coding
142821	chr20	16761151	16761460	+	0	NA	Intergenic	Intergenic	12947	NM_020157	56914		NM_020157	ENSG00000125879	OTOR	FDP|MIAL1	otoraplin	protein-coding
232782	chr9	136693201	136693680	+	0	NA	Intergenic	Intergenic	-5983	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
154575	chr22	36265651	36266250	+	0	NA	exon (NM_003661, exon 6 of 6)	exon (NM_003661, exon 6 of 6)	12817	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
2503	chr1	9693901	9694580	+	0	NA	intron (NM_001350234, intron 2 of 23)	HAL1|LINE|L1	2773	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
124280	chr19	57817971	57818450	+	0	NA	Intergenic	AluYh3|SINE|Alu	-3297	NM_024762	79818		NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
51547	chr12	52395901	52396100	+	0	NA	intron (NM_033033, intron 7 of 8)	intron (NM_033033, intron 7 of 8)	10335	NM_033033	3888		NM_033033	ENSG00000161850	KRT82	HB2|Hb-2|KRTHB2	keratin 82	protein-coding
83099	chr16	22450021	22450280	+	0	NA	intron (NR_027154, intron 1 of 28)	AluJo|SINE|Alu	-12435	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
220535	chr8	100693001	100693480	+	0	NA	Intergenic	L1MC4|LINE|L1	9784	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
113105	chr19	8288951	8289250	+	0	NA	Intergenic	L2|LINE|L2	19258	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
115846	chr19	16525521	16526000	+	0	NA	intron (NM_006387, intron 9 of 16)	CpG-13952	16677	NM_006387	10523		NM_006387	ENSG00000085872	CHERP	DAN16|SCAF6|SRA1	calcium homeostasis endoplasmic reticulum protein	protein-coding
212553	chr7	128867771	128867930	+	0	NA	intron (NM_001195150, intron 1 of 1)	AluSx4|SINE|Alu	1520	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
178715	chr4	152772301	152772600	+	0	NA	intron (NM_145720, intron 1 of 1)	MIRb|SINE|MIR	7280	NM_145720	201798		NM_145720	ENSG00000169989	TIGD4	-	tigger transposable element derived 4	protein-coding
49284	chr12	19744821	19745180	+	0	NA	Intergenic	Intergenic	-269685	NR_040098	100506393		NR_040098	ENSG00000256287	LINC02398	-	long intergenic non-protein coding RNA 2398	ncRNA
187571	chr5	142796071	142796230	+	0	NA	intron (NM_001349547, intron 1 of 21)	L2a|LINE|L2	24923	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
131502	chr2	96538501	96540080	+	0	NA	intron (NM_001319092, intron 1 of 6)	intron (NM_001319092, intron 1 of 6)	1411	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
235224	chrX	41373371	41373530	+	0	NA	Intergenic	AluSx1|SINE|Alu	39284	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
5724	chr1	26409521	26409850	+	0	NA	Intergenic	Intergenic	-1132	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
71107	chr14	104892851	104893150	+	0	NA	exon (NM_015005, exon 13 of 18)	exon (NM_015005, exon 13 of 18)	27686	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
24856	chr10	511001	511430	+	0	NA	intron (NM_014974, intron 1 of 36)	intron (NM_014974, intron 1 of 36)	-117349	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
89581	chr16	89268171	89269180	+	0	NA	intron (NM_013275, intron 12 of 12)	CpG	-27453	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
160061	chr3	18656571	18657150	+	0	NA	Intergenic	Intergenic	-211268	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
234960	chrX	39152201	39152400	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	175062	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
42802	chr11	72799501	72799780	+	0	NA	Intergenic	MER65A|LTR|ERV1	-5935	NM_006645	10809		NM_006645	ENSG00000214530	STARD10	CGI-52|NY-CO-28|PCTP2|SDCCAG28	StAR related lipid transfer domain containing 10	protein-coding
68949	chr14	91398601	91399200	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	18920	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
175404	chr4	70842971	70843480	+	0	NA	Intergenic	LTR54|LTR|ERV1	-3335	NM_002092	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
159355	chr3	13280601	13280800	+	0	NA	intron (NM_001376938, intron 1 of 15)	MER5A1|DNA|hAT-Charlie	2557	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
111984	chr19	4896271	4896430	+	0	NA	intron (NM_001367189, intron 3 of 3)	AluJb|SINE|Alu	6546	NM_001367189	645432		NM_001080523	ENSG00000205784	ARRDC5	-	arrestin domain containing 5	protein-coding
16132	chr1	153660671	153660950	+	0	NA	TTS (NM_001267809)	TTS (NM_001267809)	2107	NM_012437	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
102612	chr17	75942751	75942850	+	0	NA	3' UTR (NM_007292, exon 14 of 14)	3' UTR (NM_007292, exon 14 of 14)	-4568	NM_001319193	85302		NM_001080542	ENSG00000188878	FBF1	Alb|FBF-1	Fas binding factor 1	protein-coding
128611	chr2	61143871	61144100	+	0	NA	intron (NR_036496, intron 1 of 1)	(AG)n|Simple_repeat|Simple_repeat	990	NR_036496	339803		NR_036496	ENSG00000212978	C2orf74-DT	-	C2orf74 divergent transcript	ncRNA
135027	chr2	156313121	156313380	+	0	NA	Intergenic	CR1-L3B_Croc|LINE|CR1	19471	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
205029	chr7	6509401	6509800	+	0	NA	intron (NM_001145118, intron 11 of 21)	intron (NM_001145118, intron 11 of 21)	-25448	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
164110	chr3	56680201	56680400	+	0	NA	intron (NM_001365638, intron 1 of 22)	MIR|SINE|MIR	2937	NM_001363940	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
211528	chr7	105351271	105351430	+	0	NA	intron (NM_001350742, intron 2 of 16)	MSTC|LTR|ERVL-MaLR	37571	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
124334	chr19	58228201	58229630	+	0	NA	promoter-TSS (NM_001320773)	promoter-TSS (NM_001320773)	1	NM_001320769	27300		NM_014480	ENSG00000198131	ZNF544	-	zinc finger protein 544	protein-coding
188276	chr5	151101071	151101230	+	0	NA	3' UTR (NM_001155, exon 26 of 26)	3' UTR (NM_001155, exon 26 of 26)	-13465	NM_001252390	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
225568	chr9	35939701	35939900	+	0	NA	Intergenic	(AAAAC)n|Simple_repeat|Simple_repeat	18354	NM_019897	56656		NM_019897	ENSG00000278889	OR2S2	OR37A|OST715	olfactory receptor family 2 subfamily S member 2	protein-coding
154462	chr22	35540051	35541400	+	0	NA	promoter-TSS (NM_014310)	promoter-TSS (NM_014310)	-106	NM_014310	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
77384	chr15	82888271	82888430	+	0	NA	intron (NM_004839, intron 2 of 8)	L1HS|LINE|L1	64370	NM_004839	9455		NM_004839	ENSG00000103942	HOMER2	ACPD|CPD|DFNA68|HOMER-2|VESL-2	homer scaffold protein 2	protein-coding
11240	chr1	88936821	88937650	+	0	NA	intron (NM_001349450, intron 14 of 14)	intron (NM_001349450, intron 14 of 14)	-45668	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
121681	chr19	47508571	47508930	+	0	NA	intron (NR_038456, intron 1 of 11)	FLAM_C|SINE|Alu	6313	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
144792	chr20	36639351	36639650	+	0	NA	intron (NM_175077, intron 2 of 7)	intron (NM_175077, intron 2 of 7)	6696	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
114054	chr19	11032971	11033330	+	0	NA	intron (NR_164683, intron 26 of 35)	intron (NR_164683, intron 26 of 35)	49026	NM_001128846	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
118914	chr19	38726271	38727230	+	0	NA	intron (NM_004924, intron 17 of 20)	intron (NM_004924, intron 17 of 20)	17724	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
124001	chr19	55456771	55457130	+	0	NA	intron (NM_024710, intron 1 of 5)	intron (NM_024710, intron 1 of 5)	4692	NM_001136201	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
158994	chr3	10319471	10319950	+	0	NA	intron (NM_001136026, intron 1 of 9)	intron (NM_001136026, intron 1 of 9)	1331	NM_001136232	6396		NM_030673	ENSG00000157020	SEC13	D3S1231E|SEC13L1|SEC13R|npp-20	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding
8251	chr1	39770151	39772550	+	0	NA	promoter-TSS (NM_022120)	promoter-TSS (NM_022120)	-2	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
22112	chr1	211679671	211679900	+	0	NA	intron (NR_148994, intron 2 of 3)	intron (NR_148994, intron 2 of 3)	4023	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
205323	chr7	12434171	12434330	+	0	NA	Intergenic	Intergenic	-30309	NM_001346972	221806		NM_174949	ENSG00000146530	VWDE	-	von Willebrand factor D and EGF domains	protein-coding
87109	chr16	68608671	68609030	+	0	NA	Intergenic	L2a|LINE|L2	-36460	NM_001317196	1001		NM_001793	ENSG00000062038	CDH3	CDHP|HJMD|PCAD	cadherin 3	protein-coding
113564	chr19	10254651	10254950	+	0	NA	intron (NM_146387, intron 5 of 9)	AluSz|SINE|Alu	2586	NM_015956	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
21516	chr1	205774471	205776050	+	0	NA	5' UTR (NM_001135663, exon 1 of 4)	5' UTR (NM_001135663, exon 1 of 4)	222	NM_001135663	8934		NM_003929	ENSG00000117280	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
223202	chr8	143583221	143583700	+	0	NA	intron (NM_001330646, intron 2 of 6)	intron (NM_001330646, intron 2 of 6)	-5130	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
230356	chr9	128048621	128049050	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	18485	NM_197956	203245		NM_197956	ENSG00000171169	NAIF1	C9orf90|bA379C10.2	nuclear apoptosis inducing factor 1	protein-coding
82743	chr16	21402001	21403000	+	0	NA	exon (NM_130464, exon 13 of 13)	exon (NM_130464, exon 13 of 13)	22878	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
83127	chr16	22573001	22573830	+	0	NA	non-coding (NR_003676, exon 8 of 9).2	non-coding (NR_003676, exon 8 of 9).2	27717	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
174216	chr4	37686001	37688200	+	0	NA	promoter-TSS (NM_001085399)	promoter-TSS (NM_001085399)	-724	NM_001085400	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
205247	chr7	8105451	8105980	+	0	NA	Intergenic	Intergenic	136919	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
177269	chr4	109440351	109440850	+	0	NA	intron (NM_001318085, intron 1 of 23)	MIRb|SINE|MIR	-6783	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
135249	chr2	159715471	159715900	+	0	NA	5' UTR (NM_001282805, exon 3 of 12)	5' UTR (NM_001282805, exon 3 of 12)	3179	NM_001376255	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
96826	chr17	41960471	41961250	+	0	NA	intron (NM_031421, intron 10 of 11)	intron (NM_031421, intron 10 of 11)	-5935	NM_033133	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
64956	chr14	35977021	35977480	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-93177	NR_073454	101101773		NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA
218930	chr8	60904501	60904700	+	0	NA	Intergenic	Intergenic	6198	NR_168431	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
225596	chr9	36146751	36147050	+	0	NA	intron (NR_104637, intron 3 of 6)	MSTD-int|LTR|ERVL-MaLR	10115	NM_001287014	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
158129	chr22	50146751	50148080	+	0	NA	intron (NM_001164106, intron 1 of 8)	intron (NM_001164106, intron 1 of 8)	360	NM_001164106	54456		NM_018995	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8|SPGF73	Mov10 like RNA helicase 1	protein-coding
28849	chr10	62610551	62611080	+	0	NA	Intergenic	Intergenic	-193905	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
219220	chr8	66712151	66713630	+	0	NA	intron (NM_001033578, intron 1 of 16)	CpG	109	NM_001033578	23678		NM_013257	ENSG00000104205	SGK3	CISK|SGK2|SGKL	serum/glucocorticoid regulated kinase family member 3	protein-coding
175172	chr4	55947221	55948200	+	0	NA	Intergenic	Intergenic	-1235	NM_025009	9662		NM_014645	ENSG00000174799	CEP135	CEP4|KIAA0635|MCPH8	centrosomal protein 135	protein-coding
104856	chr17	81847351	81847650	+	0	NA	intron (NM_000918, intron 4 of 10)	intron (NM_000918, intron 4 of 10)	-12450	NM_001007533	116729		NM_001007533	ENSG00000182676	PPP1R27	DYSFIP1	protein phosphatase 1 regulatory subunit 27	protein-coding
54532	chr12	92127121	92128500	+	0	NA	intron (NR_132341, intron 1 of 4)	AluSz6|SINE|Alu	13903	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
65494	chr14	51878721	51879150	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	18323	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
196439	chr6	43479301	43479500	+	0	NA	intron (NM_001350570, intron 3 of 10)	intron (NM_001350570, intron 3 of 10)	1830	NM_001350569	93643		NM_080604	ENSG00000137221	TJAP1	PILT|TJP4	tight junction associated protein 1	protein-coding
224310	chr9	6654951	6655500	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-9496	NM_000170	2731		NM_000170	ENSG00000178445	GLDC	GCE|GCE1|GCSP|HYGN1	glycine decarboxylase	protein-coding
206558	chr7	35650851	35651500	+	0	NA	intron (NM_022373, intron 5 of 8)	L1MA4A|LINE|L1	43960	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
24391	chr1	242050951	242051050	+	0	NA	Intergenic	L1PA2|LINE|L1	-51902	NM_001004343	440738		NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule associated protein 1 light chain 3 gamma	protein-coding
88025	chr16	81078971	81079330	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1883	NM_001100873	123775		NM_152337	ENSG00000166455	C16orf46	-	chromosome 16 open reading frame 46	protein-coding
91512	chr17	4951071	4951230	+	0	NA	promoter-TSS (NM_001374523)	promoter-TSS (NM_001374523)	31	NM_001976	2027		NM_001976	ENSG00000108515	ENO3	GSD13|MSE	enolase 3	protein-coding
78617	chr15	94164221	94164550	+	0	NA	Intergenic	Intergenic	-56447	NR_120320	101927112		NR_120320	ENSG00000259724	LINC01581	-	long intergenic non-protein coding RNA 1581	ncRNA
58465	chr12	132135851	132136750	+	0	NA	TTS (NM_175066)	TTS (NM_175066)	8019	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
184775	chr5	110736451	110736850	+	0	NA	Intergenic	Intergenic	-1495	NM_001303250	91137		NM_138773	ENSG00000164209	SLC25A46	HMSN6B|PCH1E	solute carrier family 25 member 46	protein-coding
92116	chr17	7588451	7588550	+	0	NA	TTS (NM_001330073)	TTS (NM_001330073)	1594	NM_006942	6665		NM_006942	ENSG00000129194	SOX15	SOX20|SOX26|SOX27	SRY-box transcription factor 15	protein-coding
32429	chr10	102500771	102500930	+	0	NA	intron (NM_005736, intron 1 of 10)	AluJb|SINE|Alu	1862	NM_005736	10121		NM_005736	ENSG00000138107	ACTR1A	ARP1|Arp1A|CTRN1	actin related protein 1A	protein-coding
157771	chr22	46740421	46740680	+	0	NA	Intergenic	Intergenic	-2298	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
72219	chr15	30189171	30189580	+	0	NA	Intergenic	Intergenic	-6661	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
35932	chr11	2460751	2461050	+	0	NA	promoter-TSS (NM_181798)	promoter-TSS (NM_181798)	-554	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
61758	chr13	74254171	74254330	+	0	NA	intron (NR_144451, intron 1 of 1)	intron (NR_144451, intron 1 of 1)	22806	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
45641	chr11	118995351	118995450	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2738	NR_104051	338657		NM_198489	ENSG00000186166	CENATAC	CCDC84|DLNB14|MVA4	centrosomal AT-AC splicing factor	protein-coding
26993	chr10	26792021	26792280	+	0	NA	intron (NR_145410, intron 2 of 11)	L1ME3F|LINE|L1	68808	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
41649	chr11	66539101	66539750	+	0	NA	3' UTR (NM_207340, exon 3 of 3)	3' UTR (NM_207340, exon 3 of 3)	6623	NM_001348571	254359		NM_207340	ENSG00000174165	ZDHHC24	-	zinc finger DHHC-type containing 24	protein-coding
58490	chr12	132158221	132158650	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	13978	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
60056	chr13	33016071	33016780	+	0	NA	promoter-TSS (NM_004795)	promoter-TSS (NM_004795)	2	NM_004795	9365		NM_004795	ENSG00000133116	KL	HFTC3|KLA	klotho	protein-coding
26822	chr10	24466221	24466530	+	0	NA	promoter-TSS (NM_001282770)	promoter-TSS (NM_001282770)	-156	NM_001282770	56243		NM_019590	ENSG00000120549	KIAA1217	ETL4|SKT	KIAA1217	protein-coding
147770	chr20	62512551	62513050	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	-36805	NM_080473	140628		NM_080473	ENSG00000130700	GATA5	CHTD5|GATAS|bB379O24.1	GATA binding protein 5	protein-coding
199195	chr6	111780021	111780690	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-20438	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
19857	chr1	183186001	183186200	+	0	NA	promoter-TSS (NM_018891)	promoter-TSS (NM_018891)	-164	NM_018891	3918		NM_005562	ENSG00000058085	LAMC2	B2T|BM600|CSF|EBR2|EBR2A|JEB3A|JEB3B|LAMB2T|LAMNB2	laminin subunit gamma 2	protein-coding
234648	chrX	20122971	20123630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6393	NM_001168466	256714		NM_152780	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
222539	chr8	140587001	140587780	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	48243	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
105044	chr17	82062671	82062830	+	0	NA	intron (NM_022156, intron 5 of 13)	intron (NM_022156, intron 5 of 13)	3054	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
91388	chr17	4580201	4580600	+	0	NA	Intergenic	Intergenic	-3607	NM_198501	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
34296	chr10	131975071	131975430	+	0	NA	intron (NM_004052, intron 1 of 5)	intron (NM_004052, intron 1 of 5)	6763	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
92323	chr17	8141971	8142630	+	0	NA	exon (NM_002616, exon 21 of 23)	exon (NM_002616, exon 21 of 23)	2771	NR_106943	102465532		NR_106943	ENSG00000284117	MIR6883	hsa-mir-6883	microRNA 6883	ncRNA
175229	chr4	56914171	56914330	+	0	NA	intron (NM_001193508, intron 2 of 3)	intron (NM_001193508, intron 2 of 3)	5337	NM_001193508	5978		NM_005612	ENSG00000084093	REST	DFNA27|GINGF5|HGF5|NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
214814	chr7	151226621	151227900	+	0	NA	promoter-TSS (NM_005692)	promoter-TSS (NM_005692)	-55	NR_160983	114483834		NM_005692	ENSG00000285292	ABCF2-H2BK1	ABCF2-H2BE1	ABCF2-H2BK1 readthrough	protein-coding
81143	chr16	4403761	4404000	+	0	NA	intron (NM_001351729, intron 6 of 27)	L2b|LINE|L2	12017	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
212085	chr7	115230951	115231450	+	0	NA	non-coding (NR_126407, exon 1 of 5)	non-coding (NR_126407, exon 1 of 5)	155	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
165743	chr3	105723151	105723900	+	0	NA	intron (NM_001321811, intron 8 of 16)	intron (NM_001321811, intron 8 of 16)	144066	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
158272	chr22	50336871	50337850	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-5967	NM_001351647	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
21712	chr1	206749701	206750100	+	0	NA	Intergenic	Intergenic	20703	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
187419	chr5	141992121	141992800	+	0	NA	Intergenic	Intergenic	20567	NM_005471	10007		NM_005471	ENSG00000113552	GNPDA1	GNP1|GNPDA|GNPI|GPI|HLN	glucosamine-6-phosphate deaminase 1	protein-coding
192933	chr6	27754151	27754750	+	0	NA	Intergenic	tRNA-Val-GTY|tRNA|tRNA	-7294	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
135138	chr2	157439071	157440200	+	0	NA	intron (NM_004288, intron 1 of 7)	OldhAT1|DNA|hAT-Ac	4454	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
94918	chr17	31907351	31907650	+	0	NA	Intergenic	Intergenic	-5792	NM_018428	55813		NM_018428	ENSG00000108651	UTP6	C17orf40|HCA66	UTP6 small subunit processome component	protein-coding
207363	chr7	44101271	44101630	+	0	NA	Intergenic	Intergenic	-2895	NM_001129	165		NM_001129	ENSG00000106624	AEBP1	ACLP	AE binding protein 1	protein-coding
92475	chr17	8743801	8744200	+	0	NA	intron (NM_144681, intron 2 of 6)	intron (NM_144681, intron 2 of 6)	836	NM_144681	146849		NM_144681	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
184466	chr5	100706801	100707100	+	0	NA	Intergenic	Intergenic	109615	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
210383	chr7	99788651	99789150	+	0	NA	Intergenic	MIR|SINE|MIR	-4716	NM_017460	1576		NM_017460	ENSG00000160868	CYP3A4	CP33|CP34|CYP3A|CYP3A3|CYPIIIA3|CYPIIIA4|HLP|NF-25|P450C3|P450PCN1|VDDR3	cytochrome P450 family 3 subfamily A member 4	protein-coding
225792	chr9	37499851	37499950	+	0	NA	intron (NM_001282766, intron 10 of 12)	AluSx1|SINE|Alu	13952	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
54736	chr12	93741921	93743300	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	-4787	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
189617	chr5	175996671	175997030	+	0	NA	Intergenic	Intergenic	-28535	NM_032361	84321		NM_032361	ENSG00000051596	THOC3	THO3|hTREX45	THO complex subunit 3	protein-coding
15984	chr1	151943971	151944900	+	0	NA	Intergenic	MIR|SINE|MIR	-34924	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
186764	chr5	139330551	139331180	+	0	NA	3' UTR (NM_018834, exon 15 of 15)	3' UTR (NM_018834, exon 15 of 15)	-10967	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
159948	chr3	17181421	17181750	+	0	NA	intron (NM_001349090, intron 19 of 21)	intron (NM_001349090, intron 19 of 21)	248389	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
34761	chr11	195701	196680	+	0	NA	promoter-TSS (NM_001286136)	promoter-TSS (NM_001286136)	-571	NM_001286136	113746		NM_053280	ENSG00000177947	CIMAP1A	CT135|ODF3|SHIPPO1|TISP50	ciliary microtubule associated protein 1A	protein-coding
56412	chr12	113295801	113296200	+	0	NA	exon (NM_001351346, exon 29 of 29)	exon (NM_001351346, exon 29 of 29)	4477	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
12663	chr1	109278951	109279250	+	0	NA	TTS (NM_001350237)	TTS (NM_001350237)	4044	NM_001350237	84722		NM_032636	ENSG00000134222	PSRC1	DDA3|FP3214	proline and serine rich coiled-coil 1	protein-coding
151973	chr22	19143101	19143300	+	0	NA	intron (NR_134304, intron 1 of 9)	AluSx1|SINE|Alu	1451	NR_134304	8220		NM_022719	ENSG00000100056	ESS2	DGCR13|DGCR14|DGS-H|DGS-I|DGSH|DGSI|ES2|ESS-2|Es2el|bis1	ess-2 splicing factor homolog	protein-coding
68767	chr14	91076771	91077130	+	0	NA	intron (NM_001358312, intron 1 of 13)	L2c|LINE|L2	-16301	NM_182398	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
39704	chr11	61747551	61748230	+	0	NA	TTS (NM_006133)	TTS (NM_006133)	-4746	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
144568	chr20	35766701	35767000	+	0	NA	Intergenic	Intergenic	-5165	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
138860	chr2	216691121	216691700	+	0	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	4139	NM_000599	3488		NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
51289	chr12	51237001	51237200	+	0	NA	Intergenic	Intergenic	-1624	NM_001136264	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
55281	chr12	102962821	102963080	+	0	NA	Intergenic	Intergenic	-4509	NM_001354304	5053		NM_000277	ENSG00000171759	PAH	PH|PKU|PKU1	phenylalanine hydroxylase	protein-coding
88870	chr16	87695001	87695200	+	0	NA	intron (NM_020655, intron 4 of 4)	intron (NM_020655, intron 4 of 4)	70886	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
130165	chr2	75646371	75647630	+	0	NA	intron (NM_014763, intron 1 of 5)	CpG	217	NM_014763	9801		NM_014763	ENSG00000115364	MRPL19	L15mt|L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15|bL19m	mitochondrial ribosomal protein L19	protein-coding
232807	chr9	136714401	136715450	+	0	NA	intron (NM_152421, intron 1 of 4)	intron (NM_152421, intron 1 of 4)	2353	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
102809	chr17	76419751	76420050	+	0	NA	intron (NM_022066, intron 1 of 17)	intron (NM_022066, intron 1 of 17)	33252	NM_022066	63893		NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin conjugating enzyme E2 O	protein-coding
189789	chr5	176744321	176744780	+	0	NA	TTS (NR_108030)	TTS (NR_108030)	1345	NR_108030	102577424		NR_108030	ENSG00000248859	LINC01574	HI-LNC12	long intergenic non-protein coding RNA 1574	ncRNA
60744	chr13	44484651	44485130	+	0	NA	intron (NM_183422, intron 1 of 2)	MIRc|SINE|MIR	-10589	NM_001243798	8848		NM_006022	ENSG00000102804	TSC22D1	HUCEP-2|Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
165644	chr3	101813721	101814080	+	0	NA	intron (NM_001348997, intron 6 of 6)	intron (NM_001348997, intron 6 of 6)	-14090	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
219118	chr8	65998271	65999200	+	0	NA	Intergenic	L1PA5|LINE|L1	-16243	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
91716	chr17	6637221	6637480	+	0	NA	intron (NM_014804, intron 1 of 18)	intron (NM_014804, intron 1 of 18)	3361	NM_014804	9851		NM_014804	ENSG00000198920	KIAA0753	JBTS38|MNR|OFIP|SRTD21	KIAA0753	protein-coding
90018	chr16	89892851	89892950	+	0	NA	intron (NM_014972, intron 6 of 17)	intron (NM_014972, intron 6 of 17)	19308	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
63331	chr13	114015801	114016300	+	0	NA	intron (NM_001320822, intron 13 of 23).2	intron (NM_001320822, intron 13 of 23).2	-41974	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
62851	chr13	110340821	110341300	+	0	NA	TTS (NR_107040)	TTS (NR_107040)	102	NR_107040	102465872		NR_107040	ENSG00000276765	MIR8073	hsa-mir-8073	microRNA 8073	ncRNA
123442	chr19	54129951	54130730	+	0	NA	intron (NM_015629, intron 13 of 13)	intron (NM_015629, intron 13 of 13)	-7422	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
47603	chr12	5220971	5221130	+	0	NA	Intergenic	MER74A|LTR|ERVL	22101	NR_120476	101929584		NR_120476	ENSG00000256115	LINC02443	-	long intergenic non-protein coding RNA 2443	ncRNA
51938	chr12	53736451	53736750	+	0	NA	Intergenic	Intergenic	-9148	NM_001143682	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
80839	chr16	3492451	3493300	+	0	NA	TTS (NM_001353385)	TTS (NM_001353385)	2614	NM_001080524	646174		NM_001080524	ENSG00000215131	C16orf90	-	chromosome 16 open reading frame 90	protein-coding
62158	chr13	97223271	97224400	+	0	NA	intron (NM_001382682, intron 1 of 7)	intron (NM_001382682, intron 1 of 7)	1502	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
105407	chr17	82777551	82778130	+	0	NA	intron (NM_005993, intron 6 of 38)	LTR13|LTR|ERVK	25775	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
235409	chrX	45749371	45749830	+	0	NA	Intergenic	Intergenic	-2476	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
186663	chr5	138603601	138603880	+	0	NA	Intergenic	Intergenic	-28339	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
203935	chr7	1539151	1539450	+	0	NA	intron (NM_002360, intron 2 of 2)	intron (NM_002360, intron 2 of 2)	-4420	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
156105	chr22	40081501	40081980	+	0	NA	intron (NM_001024843, intron 1 of 23)	MIR|SINE|MIR	36923	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
75470	chr15	65888821	65889230	+	0	NA	3' UTR (NM_001206836, exon 5 of 5)	3' UTR (NM_001206836, exon 5 of 5)	19534	NM_001206836	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
150293	chr21	41948421	41948500	+	0	NA	promoter-TSS (NR_132773)	promoter-TSS (NR_132773)	-178	NR_132773	106635524		NR_132773		SNORA91	-	small nucleolar RNA, H/ACA box 91	snoRNA
110213	chr19	1751251	1751550	+	0	NA	Intergenic	Intergenic	-2106	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
196876	chr6	51874951	51875350	+	0	NA	intron (NM_170724, intron 46 of 60)	L1HS|LINE|L1	212463	NM_138694	5314		NM_138694	ENSG00000170927	PKHD1	ARPKD|FCYT|FPC|PCYT|PKD4|TIGM1	PKHD1 ciliary IPT domain containing fibrocystin/polyductin	protein-coding
198550	chr6	106566121	106567050	+	0	NA	intron (NM_001371242, intron 21 of 21)	AluSx1|SINE|Alu	54730	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
14614	chr1	145391301	145391500	+	0	NA	intron (NM_001278267, intron 13 of 137)	intron (NM_001278267, intron 13 of 137)	14378	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
132169	chr2	101771271	101771630	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	73185	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
202167	chr6	155316921	155317430	+	0	NA	Intergenic	Intergenic	-2691	NR_146725	51106		NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
13864	chr1	117719021	117719280	+	0	NA	Intergenic	L1PBa|LINE|L1	113102	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
110982	chr19	2982701	2983300	+	0	NA	intron (NM_001143986, intron 5 of 16)	intron (NM_001143986, intron 5 of 16)	5436	NR_138612	79816		NM_024760	ENSG00000104953	TLE6	GRG6|OZEMA15|PREMBL	TLE family member 6, subcortical maternal complex member	protein-coding
78450	chr15	92839021	92839280	+	0	NA	Intergenic	AluYa8|SINE|Alu	43666	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
89996	chr16	89875351	89876080	+	0	NA	intron (NM_014972, intron 1 of 17)	AluY|SINE|Alu	2123	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
100805	chr17	64056101	64056930	+	0	NA	intron (NM_001433, intron 12 of 21)	intron (NM_001433, intron 12 of 21)	-35881	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
164228	chr3	56934971	56935530	+	0	NA	intron (NM_001377407, intron 3 of 12)	LTR12C|LTR|ERV1	-4790	NR_046572	100874200		NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
107962	chr18	58400071	58400230	+	0	NA	3' UTR (NM_001144966, exon 30 of 30)	3' UTR (NM_001144966, exon 30 of 30)	-50924	NR_029667	406906		NR_029667	ENSG00000284440	MIR122	MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A|mir-122	microRNA 122	ncRNA
59644	chr13	28144751	28145250	+	0	NA	intron (NM_175854, intron 1 of 18)	AluSg4|SINE|Alu	-5826	NR_029383	100288730		NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
47069	chr12	565151	565250	+	0	NA	intron (NR_160428, intron 3 of 3)	intron (NR_160428, intron 3 of 3)	21286	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
159660	chr3	15355621	15355880	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-14370	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
21224	chr1	204148571	204149080	+	0	NA	intron (NM_001297761, intron 1 of 6)	intron (NM_001297761, intron 1 of 6)	3219	NM_001297760	55224		NM_018208	ENSG00000143845	ETNK2	EKI2|HMFT1716	ethanolamine kinase 2	protein-coding
14775	chr1	146048271	146048830	+	0	NA	Intergenic	AluSx1|SINE|Alu	3694	NR_104085	101954276		NR_104085	ENSG00000201558	RNVU1-6	RNU1-99|vU1.6	RNA, variant U1 small nuclear 6	snRNA
44376	chr11	102560671	102561430	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-30303	NM_002423	4316		NM_002423	ENSG00000137673	MMP7	MMP-7|MPSL1|PUMP-1	matrix metallopeptidase 7	protein-coding
62396	chr13	99278021	99278680	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-19922	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
149661	chr21	33558001	33558200	+	0	NA	3' UTR (NM_001291411, exon 5 of 5)	3' UTR (NM_001291411, exon 5 of 5)	7438	NR_106756	102465248		NR_106756	ENSG00000284448	MIR6501	hsa-mir-6501|mir-6501	microRNA 6501	ncRNA
232586	chr9	136401401	136401600	+	0	NA	TTS (NM_006643)	TTS (NM_006643)	-3063	NM_003086	6621		NM_003086	ENSG00000165684	SNAPC4	NEDRSO|PTFalpha|SNAP190	small nuclear RNA activating complex polypeptide 4	protein-coding
237264	chrX	110321701	110322030	+	0	NA	intron (NM_001171689, intron 2 of 7)	intron (NM_001171689, intron 2 of 7)	-3780	NM_001025580	9949		NM_015365	ENSG00000101935	AMMECR1	AMMERC1|MFHIEN	AMMECR nuclear protein 1	protein-coding
41341	chr11	65924571	65924930	+	0	NA	Intergenic	Intergenic	5324	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
45349	chr11	118239701	118240150	+	0	NA	intron (NM_001286152, intron 2 of 5)	A-rich|Low_complexity|Low_complexity	12440	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
85850	chr16	57019801	57020000	+	0	NA	intron (NM_001384955, intron 2 of 47)	intron (NM_001384955, intron 2 of 47)	30343	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
79402	chr16	671451	671750	+	0	NA	intron (NR_147953, intron 9 of 16)	intron (NR_147953, intron 9 of 16)	3468	NM_001352284	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
36184	chr11	3218521	3218780	+	0	NA	exon (NM_001164377, exon 1 of 1)	exon (NM_001164377, exon 1 of 1)	163	NM_001164377	386746		NM_001164377	ENSG00000182170	MRGPRG	GPR169|MRGG	MAS related GPR family member G	protein-coding
234305	chrX	13716171	13716700	+	0	NA	intron (NM_001128835, intron 4 of 5)	intron (NM_001128835, intron 4 of 5)	18185	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
53523	chr12	66910151	66910680	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-106146	NM_001379348	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
131706	chr2	97747271	97747780	+	0	NA	Intergenic	L1MB7|LINE|L1	14225	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
159589	chr3	15069251	15069550	+	0	NA	TTS (NM_022340)	TTS (NM_022340)	-4085	NM_022497	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
22951	chr1	225997801	225998030	+	0	NA	intron (NM_152608, intron 1 of 6)	AluSq2|SINE|Alu	1428	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
95688	chr17	38422071	38422230	+	0	NA	Intergenic	MIRb|SINE|MIR	-6314	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
156564	chr22	41455551	41455850	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8899	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
210089	chr7	97024271	97024650	+	0	NA	exon (NM_005221, exon 1 of 3)	exon (NM_005221, exon 1 of 3)	371	NM_005221	1749		NM_005221	ENSG00000105880	DLX5	SHFM1|SHFM1D	distal-less homeobox 5	protein-coding
143058	chr20	21507721	21508180	+	0	NA	Intergenic	CpG	6114	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
207069	chr7	39948501	39950890	+	0	NA	promoter-TSS (NR_158201)	promoter-TSS (NR_158201)	-276	NR_158201	112267983		NR_158201	ENSG00000259826	CDK13-DT	-	CDK13 divergent transcript	ncRNA
137067	chr2	190903001	190903300	+	0	NA	intron (NM_014905, intron 5 of 17)	FLAM_C|SINE|Alu	22329	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
127984	chr2	46918671	46919180	+	0	NA	intron (NM_001288953, intron 2 of 20)	intron (NM_001288953, intron 2 of 20)	-2813	NM_001171507	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
12009	chr1	95236521	95236950	+	0	NA	intron (NM_001199682, intron 1 of 3)	intron (NM_001199682, intron 1 of 3)	2525	NM_015485	25950		NM_015485	ENSG00000122481	RWDD3	RSUME	RWD domain containing 3	protein-coding
175047	chr4	53012801	53013000	+	0	NA	intron (NM_152540, intron 5 of 8)	intron (NM_152540, intron 5 of 8)	150583	NM_023940	65997		NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding
204016	chr7	1910701	1911100	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	29671	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
208956	chr7	74184921	74185380	+	0	NA	intron (NM_022170, intron 1 of 6)	AluJr|SINE|Alu	-6048	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
72707	chr15	38647901	38648300	+	0	NA	Intergenic	Intergenic	-48498	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
149805	chr21	34988571	34989050	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	50616	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
73518	chr15	43788701	43789430	+	0	NA	intron (NM_001199877, intron 2 of 4)	AluY|SINE|Alu	-2911	NR_037672	10169		NM_005770	ENSG00000140264	SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
184498	chr5	100873551	100873850	+	0	NA	intron (NM_005668, intron 3 of 4)	intron (NM_005668, intron 3 of 4)	29582	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
155311	chr22	38199071	38199900	+	0	NA	Intergenic	Intergenic	-2447	NM_001161572	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
96447	chr17	40203001	40203200	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	9503	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
115391	chr19	15263651	15264550	+	0	NA	intron (NM_001379291, intron 6 of 19)	intron (NM_001379291, intron 6 of 19)	16351	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
114830	chr19	13822871	13823230	+	0	NA	intron (NM_023072, intron 9 of 12)	AluJr|SINE|Alu	13309	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
20174	chr1	193019421	193019780	+	0	NA	TTS (NR_037607)	TTS (NR_037607)	37815	NR_135615	107397392		NR_135615	ENSG00000238754	SCARNA18B	-	small Cajal body-specific RNA 18B	ncRNA
108100	chr18	61952101	61952630	+	0	NA	Intergenic	Intergenic	-59358	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
67700	chr14	73248571	73248750	+	0	NA	intron (NM_173462, intron 5 of 25)	AluJb|SINE|Alu	-2659	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
100661	chr17	63708721	63709350	+	0	NA	intron (NM_001165970, intron 6 of 10)	L1ME5|LINE|L1	8697	NR_046273	729683		NR_046273		LOC729683	-	uncharacterized LOC729683	ncRNA
4768	chr1	23533171	23533950	+	0	NA	Intergenic	MIR|SINE|MIR	-2327	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
117681	chr19	26656151	26656250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1137231	NR_146735	101927151		NR_110687	ENSG00000267575	LINC02987	-	long intergenic non-protein coding RNA 2987	ncRNA
208606	chr7	72952371	72952750	+	0	NA	intron (NR_033323, intron 4 of 10)	AluSx1|SINE|Alu	2203	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
145310	chr20	41060301	41060700	+	0	NA	intron (NM_003286, intron 2 of 20)	L1ME2|LINE|L1	31678	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
161557	chr3	42698851	42699730	+	0	NA	intron (NM_020707, intron 3 of 11)	(TTA)n|Simple_repeat|Simple_repeat	2231	NR_027753	57467		NM_020707	ENSG00000010282	HHATL	C3orf3|GUP1|MBOAT3|MSTP002|OACT3	hedgehog acyltransferase like	protein-coding
73382	chr15	42556201	42556530	+	0	NA	intron (NM_001130447, intron 1 of 4)	AluSz|SINE|Alu	7527	NM_001130447	55142		NM_018097	ENSG00000137814	HAUS2	C15orf25|CEP27|HsT17025	HAUS augmin like complex subunit 2	protein-coding
144596	chr20	35800501	35800900	+	0	NA	intron (NM_016436, intron 1 of 17)	AluSz|SINE|Alu	28685	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
227528	chr9	91429471	91429630	+	0	NA	Intergenic	Intergenic	-4924	NM_001290000	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
162012	chr3	46441821	46442480	+	0	NA	intron (NM_002343, intron 13 of 16)	HAL1|LINE|L1	-18483	NR_151704	105377068		NR_151704	ENSG00000283646	LINC02009	-	long intergenic non-protein coding RNA 2009	ncRNA
24699	chr1	247322671	247323630	+	0	NA	intron (NM_032752, intron 6 of 9)	intron (NM_032752, intron 6 of 9)	8717	NM_032752	84838		NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
130504	chr2	85592821	85593280	+	0	NA	exon (NM_006634, exon 3 of 3)	exon (NM_006634, exon 3 of 3)	-2695	NM_016494	51255		NM_016494	ENSG00000168894	RNF181	HSPC238	ring finger protein 181	protein-coding
211951	chr7	112482051	112482350	+	0	NA	intron (NM_182597, intron 1 of 3)	intron (NM_182597, intron 1 of 3)	1209	NM_182597	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
107616	chr18	48928821	48929680	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	13557	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
221904	chr8	128658801	128659000	+	0	NA	Intergenic	Intergenic	-94221	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
155817	chr22	39323171	39323330	+	0	NA	Intergenic	LTR32|LTR|ERVL	-3627	NM_001033853	6122		NM_000967	ENSG00000100316	RPL3	ASC-1|L3|TARBP-B|uL3	ribosomal protein L3	protein-coding
18564	chr1	162791771	162791930	+	0	NA	intron (NM_001304512, intron 1 of 3)	intron (NM_001304512, intron 1 of 3)	1148	NM_001304512	51478		NM_016371	ENSG00000132196	HSD17B7	PRAP|SDR37C1	hydroxysteroid 17-beta dehydrogenase 7	protein-coding
115897	chr19	16586741	16588000	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-14955	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
35430	chr11	1437551	1437880	+	0	NA	intron (NM_001256630, intron 2 of 19)	intron (NM_001256630, intron 2 of 19)	26563	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
207110	chr7	41817471	41817630	+	0	NA	Intergenic	MER77B|LTR|ERVL	-114460	NM_002192	3624		NM_002192	ENSG00000122641	INHBA	EDF|FRP	inhibin subunit beta A	protein-coding
65267	chr14	49976971	49978000	+	0	NA	Intergenic	Intergenic	11086	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA
104669	chr17	81492321	81492680	+	0	NA	Intergenic	Intergenic	20299	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
234667	chrX	20181771	20182330	+	0	NA	intron (NM_004586, intron 10 of 21)	intron (NM_004586, intron 10 of 21)	-40212	NM_001412	1964		NM_001412	ENSG00000173674	EIF1AX	EIF1A|EIF1AP1|EIF4C|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A X-linked	protein-coding
75063	chr15	64249701	64249900	+	0	NA	intron (NM_001329607, intron 4 of 11)	intron (NM_001329607, intron 4 of 11)	-86778	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
221654	chr8	125945571	125946630	+	0	NA	non-coding (NR_038447, exon 2 of 4)	non-coding (NR_038447, exon 2 of 4)	5097	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
22248	chr1	212615851	212616230	+	0	NA	intron (NM_001206484, intron 3 of 4)	L2a|LINE|L2	1022	NM_001206486	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
211601	chr7	105851971	105852200	+	0	NA	intron (NM_001385596, intron 2 of 11)	intron (NM_001385596, intron 2 of 11)	24500	NM_152749	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
69163	chr14	92589051	92589450	+	0	NA	intron (NM_024832, intron 3 of 9)	L2c|LINE|L2	13016	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
112499	chr19	6463001	6463330	+	0	NA	promoter-TSS (NM_174882)	promoter-TSS (NM_174882)	-612	NM_174882	92359		NM_139161	ENSG00000130545	CRB3	-	crumbs cell polarity complex component 3	protein-coding
83621	chr16	28210901	28213130	+	0	NA	promoter-TSS (NM_015171)	promoter-TSS (NM_015171)	-50	NM_015171	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
152419	chr22	20577451	20578030	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	69693	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
104580	chr17	81386601	81387750	+	0	NA	Intergenic	CpG	-1793	NR_164137	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
214081	chr7	143480651	143480950	+	0	NA	intron (NR_033897, intron 2 of 4)	L1ME4b|LINE|L1	2927	NM_176883	259287		NM_176883	ENSG00000221855	TAS2R41	T2R41|T2R59	taste 2 receptor member 41	protein-coding
222728	chr8	141387721	141388230	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-4046	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
58823	chr12	132833851	132835000	+	0	NA	3' UTR (NM_001161346, exon 18 of 18)	3' UTR (NM_001161346, exon 18 of 18)	-5556	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
118563	chr19	36210521	36210980	+	0	NA	5' UTR (NM_001366189, exon 2 of 6)	5' UTR (NM_001366189, exon 2 of 6)	2829	NM_001366189	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
77343	chr15	82535371	82535530	+	0	NA	Intergenic	AluSx1|SINE|Alu	5007	NM_001021	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
6676	chr1	29136251	29136930	+	0	NA	Intergenic	L1ME4c|LINE|L1	-12687	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
50240	chr12	46242371	46242880	+	0	NA	intron (NM_001278388, intron 1 of 15)	AluJb|SINE|Alu	23891	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
200235	chr6	131715671	131715850	+	0	NA	intron (NM_005021, intron 15 of 24)	L1PA15-16|LINE|L1	-4743	NM_001145659	643854		NM_001145659	ENSG00000236761	CTAGE9	-	CTAGE family member 9	protein-coding
239416	chrY	56675871	56676500	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-278070	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
58992	chr13	20041471	20041700	+	0	NA	intron (NM_001353161, intron 14 of 26)	L1PA13|LINE|L1	-61116	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
55806	chr12	108729951	108730700	+	0	NA	intron (NM_014325, intron 1 of 10)	intron (NM_014325, intron 1 of 10)	518	NM_001276471	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
132010	chr2	100617551	100617650	+	0	NA	Intergenic	Intergenic	13861	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
213312	chr7	135165371	135165700	+	0	NA	TTS (NM_001243751)	TTS (NM_001243751)	3939	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
14255	chr1	143253701	143253900	+	0	NA	Intergenic	Intergenic	168792	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
232978	chr9	136975721	136976650	+	0	NA	Intergenic	Intergenic	-1319	NM_000954	5730		NM_000954	ENSG00000107317	PTGDS	L-PGDS|LPGDS|PDS|PGD2|PGDS|PGDS2	prostaglandin D2 synthase	protein-coding
23287	chr1	228010521	228010980	+	0	NA	intron (NM_033131, intron 1 of 3)	intron (NM_033131, intron 1 of 3)	3752	NM_033131	89780		NM_033131	ENSG00000154342	WNT3A	-	Wnt family member 3A	protein-coding
92093	chr17	7565671	7566100	+	0	NA	intron (NM_015670, intron 6 of 10)	intron (NM_015670, intron 6 of 10)	3893	NR_037926	100533955		NR_037926		SENP3-EIF4A1	-	SENP3-EIF4A1 readthrough (NMD candidate)	ncRNA
45147	chr11	117199851	117200350	+	0	NA	intron (NR_045215, intron 1 of 7)	intron (NR_045215, intron 1 of 7)	730	NM_003186	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
211865	chr7	111017771	111017930	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-73156	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
97265	chr17	43013321	43013980	+	0	NA	TTS (NM_006373)	TTS (NM_006373)	6866	NM_005533	3430		NM_005533	ENSG00000068079	IFI35	IFP35	interferon induced protein 35	protein-coding
78818	chr15	99616971	99617330	+	0	NA	intron (NM_001352615, intron 3 of 12)	intron (NM_001352615, intron 3 of 12)	-15828	NM_001130928	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
225825	chr9	37807771	37808130	+	0	NA	intron (NM_024345, intron 1 of 6)	AluSq2|SINE|Alu	7153	NM_024345	79269		NM_024345	ENSG00000122741	DCAF10	WDR32	DDB1 and CUL4 associated factor 10	protein-coding
46314	chr11	125091171	125091430	+	0	NA	TTS (NM_198277)	TTS (NM_198277)	20326	NR_047590	219854		NM_001080546	ENSG00000150433	TMEM218	JBTS39	transmembrane protein 218	protein-coding
85418	chr16	50323571	50324380	+	0	NA	intron (NM_013263, intron 11 of 16)	L2a|LINE|L2	31359	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
223185	chr8	143562351	143562730	+	0	NA	intron (NM_001166237, intron 13 of 13).2	intron (NM_001166237, intron 13 of 13).2	4194	NM_024736	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
205268	chr7	8175971	8178200	+	0	NA	intron (NR_146926, intron 6 of 13)	intron (NR_146926, intron 6 of 13)	85082	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
10547	chr1	66989671	66990230	+	0	NA	Intergenic	Intergenic	59694	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
19658	chr1	180482451	180483080	+	0	NA	intron (NM_032360, intron 3 of 7)	intron (NM_032360, intron 3 of 7)	19812	NM_032360	84320		NM_032360	ENSG00000230124	ACBD6	NEDPM	acyl-CoA binding domain containing 6	protein-coding
16676	chr1	155188151	155188680	+	0	NA	exon (NM_001204286, exon 4 of 9)	exon (NM_001204286, exon 4 of 9)	4494	NM_001204287	4582		NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|ADTKD2|CA 15-3|CD227|Ca15-3|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding
78111	chr15	90300001	90300200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-34341	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
119642	chr19	40808601	40809050	+	0	NA	TTS (NM_080732)	TTS (NM_080732)	2275	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
214200	chr7	148626951	148627530	+	0	NA	Intergenic	L1ME3G|LINE|L1	36474	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
115436	chr19	15316651	15317580	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	15424	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
58781	chr12	132730771	132731130	+	0	NA	intron (NM_015114, intron 10 of 12)	intron (NM_015114, intron 10 of 12)	20108	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
97290	chr17	43168821	43170600	+	0	NA	promoter-TSS (NM_031862)	promoter-TSS (NM_031862)	693	NR_110868	101929767		NR_110868		LOC101929767	-	uncharacterized LOC101929767	ncRNA
221753	chr8	127783221	127783680	+	0	NA	Intergenic	MIR|SINE|MIR	-11083	NR_003367	5820		NR_003367	ENSG00000249859	PVT1	LINC00079|MIR1204HG|NCRNA00079|TP53LC09|onco-lncRNA-100	Pvt1 oncogene	ncRNA
49243	chr12	19436101	19436500	+	0	NA	Intergenic	MER41B|LTR|ERV1	-3192	NM_153207	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
237786	chrX	129786351	129786950	+	0	NA	intron (NM_018990, intron 1 of 7)	intron (NM_018990, intron 1 of 7)	6701	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
57204	chr12	121494201	121495080	+	0	NA	exon (NM_032590, exon 12 of 23)	exon (NM_032590, exon 12 of 23)	-50288	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
203502	chr7	610401	611300	+	0	NA	intron (NM_001164759, intron 4 of 10)	intron (NM_001164759, intron 4 of 10)	7452	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
232301	chr9	134470501	134470900	+	0	NA	Intergenic	Intergenic	64140	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
168862	chr3	152285761	152286000	+	0	NA	intron (NM_001376823, intron 1 of 10)	AluJo|SINE|Alu	-13134	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
225547	chr9	35832051	35832350	+	0	NA	intron (NM_001363625, intron 1 of 4)	(GT)n|Simple_repeat|Simple_repeat	2972	NM_001042590	51754		NM_016446	ENSG00000137103	TMEM8B	C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6|NGX6a	transmembrane protein 8B	protein-coding
27059	chr10	27145921	27146530	+	0	NA	intron (NM_001253866, intron 2 of 17)	intron (NM_001253866, intron 2 of 17)	8159	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
232034	chr9	133405021	133405530	+	0	NA	TTS (NM_001279351)	TTS (NM_001279351)	-9062	NR_024514	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
188138	chr5	150401451	150401550	+	0	NA	TTS (NM_004355)	TTS (NM_004355)	11256	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
177028	chr4	107036271	107036630	+	0	NA	promoter-TSS (NM_014421)	promoter-TSS (NM_014421)	-137	NM_014421	27123		NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
129021	chr2	64880871	64882030	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-17819	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
205296	chr7	10998921	10999580	+	0	NA	intron (NM_014660, intron 4 of 16)	MER102b|DNA|hAT-Charlie	25378	NR_033436	9678		NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
226258	chr9	67722201	67723500	+	0	NA	Intergenic	SST1|Satellite|centr	-3671	NR_103833	100131997		NR_103833	ENSG00000274026	FAM27E3	-	family with sequence similarity 27 member E3	ncRNA
123711	chr19	55036351	55036650	+	0	NA	intron (NM_001083899, intron 1 of 7).8	AluJb|SINE|Alu	1764	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
178154	chr4	142348051	142349030	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	-42596	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
42961	chr11	73729721	73730030	+	0	NA	intron (NM_198896, intron 2 of 7)	MER74A|LTR|ERVL	30218	NM_001243719	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
185860	chr5	132506021	132506380	+	0	NA	Intergenic	L1MEf|LINE|L1	-15427	NM_001354925	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
220427	chr8	100291471	100291630	+	0	NA	intron (NM_001280539, intron 2 of 10)	intron (NM_001280539, intron 2 of 10)	10643	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
211739	chr7	107172521	107173080	+	0	NA	intron (NM_012257, intron 1 of 10)	FLAM_C|SINE|Alu	3797	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
163385	chr3	50497321	50497780	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	6084	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
180322	chr5	6372971	6373130	+	0	NA	intron (NM_032286, intron 3 of 3)	intron (NM_032286, intron 3 of 3)	5497	NM_032286	84246		NM_032286	ENSG00000133398	MED10	L6|NUT2|TRG20	mediator complex subunit 10	protein-coding
30459	chr10	79115321	79115580	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	46484	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
56635	chr12	118359551	118360230	+	0	NA	promoter-TSS (NM_001346489)	promoter-TSS (NM_001346489)	-185	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
153993	chr22	30393451	30393750	+	0	NA	Intergenic	Intergenic	-3341	NM_033382	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
150688	chr21	43689571	43689730	+	0	NA	intron (NM_015056, intron 13 of 15)	intron (NM_015056, intron 13 of 15)	-29479	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
113913	chr19	10698571	10698980	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2664	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
83570	chr16	28131621	28131880	+	0	NA	intron (NM_001270940, intron 13 of 24)	MIRb|SINE|MIR	-68036	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
134533	chr2	143675271	143675630	+	0	NA	intron (NM_018460, intron 12 of 13)	Tigger1|DNA|TcMar-Tigger	-261617	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
66420	chr14	61519571	61519880	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	50469	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
107134	chr18	35118751	35119950	+	0	NA	intron (NR_046177, intron 4 of 6)	L2a|LINE|L2	77937	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
82784	chr16	21452721	21453180	+	0	NA	non-coding (NR_027155, exon 24 of 29)	non-coding (NR_027155, exon 24 of 29)	-18495	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
206921	chr7	38219771	38219930	+	0	NA	intron (NM_032016, intron 7 of 8)	intron (NM_032016, intron 7 of 8)	41605	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
9844	chr1	54229371	54229930	+	0	NA	intron (NM_145716, intron 14 of 17)	intron (NM_145716, intron 14 of 17)	-6793	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
173615	chr4	11235651	11235830	+	0	NA	Intergenic	L1PA2|LINE|L1	-133087	NR_030298	693157		NR_030298	ENSG00000207716	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
113282	chr19	8536251	8536550	+	0	NA	intron (NM_012335, intron 18 of 27)	CpG	-22233	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
150415	chr21	42400501	42400930	+	0	NA	Intergenic	L1M4|LINE|L1	-3187	NM_018961	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
110495	chr19	2041431	2043460	+	0	NA	exon (NM_017572, exon 10 of 14)	exon (NM_017572, exon 10 of 14)	8799	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
17901	chr1	160104271	160104630	+	0	NA	Intergenic	Intergenic	-5622	NM_001206665	93185		NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
218637	chr8	56787571	56787730	+	0	NA	Intergenic	Intergenic	206217	NM_017813	54928		NM_017813	ENSG00000104331	BPNT2	GPAPP|IMP 3|IMP-3|IMPA3|IMPAD1	3'(2'), 5'-bisphosphate nucleotidase 2	protein-coding
62026	chr13	87672521	87673250	+	0	NA	promoter-TSS (NM_001384610)	promoter-TSS (NM_001384610)	296	NM_015567	26050		NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	SLIT and NTRK like family member 5	protein-coding
173488	chr4	9216571	9216930	+	0	NA	exon (NM_001256854, exon 1 of 1)	exon (NM_001256854, exon 1 of 1)	1345	NM_001256859	100287364		NM_001256859	ENSG00000250844	USP17L18	-	ubiquitin specific peptidase 17 like family member 18	protein-coding
75609	chr15	67118101	67118300	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	-7516	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
71601	chr14	106605851	106606150	+	0	NA	Intergenic	Intergenic	123561	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
93749	chr17	19876601	19877400	+	0	NA	Intergenic	Intergenic	-9064	NM_001142610	9706		NM_014683	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
186286	chr5	134550551	134551350	+	0	NA	intron (NM_001289985, intron 3 of 11)	intron (NM_001289985, intron 3 of 11)	24842	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
99954	chr17	57438171	57438800	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	85112	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
145163	chr20	38846701	38846900	+	0	NA	intron (NM_001172735, intron 2 of 9)	AluJr4|SINE|Alu	41103	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
202239	chr6	156853501	156853700	+	0	NA	intron (NM_017519, intron 2 of 18)	intron (NM_017519, intron 2 of 18)	-73869	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
196849	chr6	47481671	47481830	+	0	NA	intron (NM_012120, intron 1 of 17)	intron (NM_012120, intron 1 of 17)	3961	NM_012120	23607		NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
17372	chr1	156572001	156573000	+	0	NA	promoter-TSS (NM_178229)	promoter-TSS (NM_178229)	65	NM_178229	128239		NM_178229	ENSG00000183856	IQGAP3	-	IQ motif containing GTPase activating protein 3	protein-coding
132237	chr2	102366521	102368000	+	0	NA	intron (NM_001371424, intron 2 of 8)	intron (NM_001371424, intron 2 of 8)	10977	NM_001282399	8809		NM_003855	ENSG00000115604	IL18R1	CD218a|CDw218a|IL-18R-alpha|IL-18Ralpha|IL-1Rrp|IL18RA|IL18Ralpha2|IL1RRP	interleukin 18 receptor 1	protein-coding
10162	chr1	61058701	61058900	+	0	NA	Intergenic	Intergenic	-18427	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
162312	chr3	47423171	47423830	+	0	NA	intron (NM_001320044, intron 6 of 19)	AluJb|SINE|Alu	42479	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
214887	chr7	151411521	151412050	+	0	NA	non-coding (NR_034012, exon 3 of 5)	non-coding (NR_034012, exon 3 of 5)	-1073	NM_001284261	349136		NM_198285	ENSG00000187260	WDR86	-	WD repeat domain 86	protein-coding
130816	chr2	87057651	87058200	+	0	NA	intron (NR_026846, intron 1 of 10)	L2a|LINE|L2	18488	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
108785	chr18	77250571	77251050	+	0	NA	exon (NM_001480, exon 1 of 3)	exon (NM_001480, exon 1 of 3)	962	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
44624	chr11	108853821	108854800	+	0	NA	intron (NM_004398, intron 16 of 17)	intron (NM_004398, intron 16 of 17)	189241	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
85594	chr16	53512151	53512480	+	0	NA	Intergenic	AluJr|SINE|Alu	-9011	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
196221	chr6	42786921	42788430	+	0	NA	intron (NR_134654, intron 1 of 1)	L2c|LINE|L2	4179	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
145010	chr20	37693401	37694450	+	0	NA	promoter-TSS (NM_001281495)	promoter-TSS (NM_001281495)	-30	NM_001281495	56259		NM_030877	ENSG00000132792	CTNNBL1	C20orf33|IMD99|NAP|P14L|PP8304|dJ633O20.1	catenin beta like 1	protein-coding
13555	chr1	115608101	115608400	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-33720	NM_138959	81839		NM_138959	ENSG00000173218	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding
130531	chr2	85636601	85636880	+	0	NA	intron (NR_046347, intron 7 of 12)	AluSx1|SINE|Alu	20554	NM_001256725	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
233154	chr9	137172271	137172430	+	0	NA	promoter-TSS (NM_001282477)	promoter-TSS (NM_001282477)	-294	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
67730	chr14	73537371	73537830	+	0	NA	exon (NM_001037161, exon 1 of 3)	exon (NM_001037161, exon 1 of 3)	457	NM_001037161	641371		NM_001037161	ENSG00000184227	ACOT1	ACH2|CTE-1|LACH2	acyl-CoA thioesterase 1	protein-coding
93876	chr17	21041681	21042400	+	0	NA	intron (NM_015276, intron 1 of 12)	CpG	971	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
151979	chr22	19149501	19150950	+	0	NA	promoter-TSS (NM_005315)	promoter-TSS (NM_005315)	67	NM_005315	2928		NM_005315	ENSG00000063515	GSC2	GSCL	goosecoid homeobox 2	protein-coding
24587	chr1	245807121	245807680	+	0	NA	intron (NM_001375966, intron 7 of 8)	intron (NM_001375966, intron 7 of 8)	181151	NM_001375965	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
195640	chr6	37861001	37861200	+	0	NA	intron (NM_021943, intron 1 of 5)	AluSz6|SINE|Alu	41373	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
101715	chr17	68518051	68518730	+	0	NA	intron (NM_212471, intron 2 of 10)	THE1C-int|LTR|ERVL-MaLR	2996	NM_001276290	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
165749	chr3	105743101	105743300	+	0	NA	intron (NM_001321811, intron 5 of 16)	AluSz6|SINE|Alu	124391	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
175223	chr4	56908501	56909930	+	0	NA	5' UTR (NM_001363453, exon 1 of 4)	5' UTR (NM_001363453, exon 1 of 4)	302	NM_001193508	5978		NM_005612	ENSG00000084093	REST	DFNA27|GINGF5|HGF5|NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
83913	chr16	29011271	29011780	+	0	NA	Intergenic	Intergenic	26473	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
47354	chr12	2034721	2035630	+	0	NA	Intergenic	Intergenic	-13177	NR_046768	100874369		NR_046768	ENSG00000151067	CACNA1C-IT2	-	CACNA1C intronic transcript 2	ncRNA
72737	chr15	38853671	38853850	+	0	NA	Intergenic	Intergenic	157162	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
86177	chr16	57812851	57813150	+	0	NA	intron (NR_169553, intron 1 of 3)	intron (NR_169553, intron 1 of 3)	2363	NM_001278081	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
115091	chr19	14237571	14237930	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-31581	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
155011	chr22	37342551	37342850	+	0	NA	non-coding (NR_110512, exon 2 of 3)	non-coding (NR_110512, exon 2 of 3)	12139	NR_110515	100506271		NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA
189684	chr5	176406671	176406830	+	0	NA	intron (NM_001364127, intron 2 of 2)	intron (NM_001364127, intron 2 of 2)	4073	NM_001364126	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
205590	chr7	21448951	21449300	+	0	NA	intron (NM_003112, intron 3 of 5)	MER74A|LTR|ERVL	21042	NM_001326543	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
192939	chr6	27772221	27772880	+	0	NA	Intergenic	Intergenic	10806	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
228878	chr9	112490351	112490650	+	0	NA	intron (NM_133465, intron 1 of 3)	intron (NM_133465, intron 1 of 3)	-2856	NM_001350649	100133204		NM_001350649		HSDL2-AS1	C9orf147	HSDL2 antisense RNA 1	ncRNA
204316	chr7	2702051	2702430	+	0	NA	intron (NM_001321766, intron 2 of 6)	intron (NM_001321766, intron 2 of 6)	14038	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
187413	chr5	141960471	141961550	+	0	NA	Intergenic	Intergenic	-2808	NM_016580	51294		NM_016580	ENSG00000113555	PCDH12	DMJDS1|VE-cadherin-2|VECAD2	protocadherin 12	protein-coding
22897	chr1	225853401	225853600	+	0	NA	intron (NM_014698, intron 19 of 24)	intron (NM_014698, intron 19 of 24)	28146	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
124850	chr2	7825801	7826100	+	0	NA	Intergenic	Intergenic	73705	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
143358	chr20	25984801	25985280	+	0	NA	Intergenic	SST1|Satellite|centr	-24759	NR_004846	100134868		NR_004846		LOC100134868	-	uncharacterized LOC100134868	ncRNA
210389	chr7	99914351	99915180	+	0	NA	intron (NM_033091, intron 1 of 5)	L2a|LINE|L2	4765	NM_033091	89122		NM_033017	ENSG00000146833	TRIM4	RNF87	tripartite motif containing 4	protein-coding
175347	chr4	68566471	68566630	+	0	NA	intron (NM_001077, intron 2 of 6)	THE1D|LTR|ERVL-MaLR	9772	NM_001077	7367		NM_001077	ENSG00000197888	UGT2B17	BMND12|UDPGT2B17	UDP glucuronosyltransferase family 2 member B17	protein-coding
12039	chr1	97934551	97934850	+	0	NA	intron (NR_146275, intron 1 of 1)	intron (NR_146275, intron 1 of 1)	7040	NR_146275	109729128		NR_146275		LINC01930	-	long intergenic non-protein coding RNA 1930	ncRNA
137367	chr2	196169051	196169430	+	0	NA	intron (NM_004226, intron 1 of 7)	AluSx4|SINE|Alu	2338	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
45562	chr11	118789521	118791400	+	0	NA	intron (NM_004397, intron 1 of 13)	intron (NM_004397, intron 1 of 13)	488	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
207369	chr7	44106721	44107180	+	0	NA	intron (NM_001129, intron 2 of 20)	intron (NM_001129, intron 2 of 20)	2605	NM_001129	165		NM_001129	ENSG00000106624	AEBP1	ACLP	AE binding protein 1	protein-coding
129545	chr2	69774551	69775480	+	0	NA	intron (NM_001365496, intron 2 of 13)	MER21-int|LTR|ERVL	23983	NR_164155	107985770		NR_164153	ENSG00000288869	SMANTIS	ANXA4-AS|n342419	SMARCA4 interacting SWI/SNF chromatin remodeling complex scaffold lncRNA	ncRNA
234005	chrX	3650571	3650730	+	0	NA	intron (NM_005044, intron 3 of 8)	AluJb|SINE|Alu	-8837	NR_046643	100873944		NR_046643	ENSG00000236188	PRKX-AS1	-	PRKX antisense RNA 1	ncRNA
23872	chr1	234841821	234842150	+	0	NA	Intergenic	Intergenic	-81929	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
79432	chr16	703871	704130	+	0	NA	intron (NM_153350, intron 1 of 5)	intron (NM_153350, intron 1 of 5)	1801	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
186669	chr5	138644301	138644800	+	0	NA	Intergenic	Intergenic	-69149	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
235403	chrX	45505321	45505580	+	0	NA	promoter-TSS (NR_104645)	promoter-TSS (NR_104645)	62	NR_104645	101927528		NR_104644	ENSG00000229563	LINC01204	-	long intergenic non-protein coding RNA 1204	ncRNA
231685	chr9	131704021	131704600	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	5532	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
238488	chrX	153507121	153507930	+	0	NA	intron (NM_001711, intron 7 of 7)	intron (NM_001711, intron 7 of 7)	-12060	NR_073156	55559		NM_017518	ENSG00000213397	HAUS7	UCHL5IP|UIP1	HAUS augmin like complex subunit 7	protein-coding
195996	chr6	41997171	41997530	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	51544	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
152295	chr22	20317421	20318180	+	0	NA	intron (NM_033257, intron 2 of 4)	L1MC4|LINE|L1	2260	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
112215	chr19	5697801	5698000	+	0	NA	intron (NR_076392, intron 11 of 18)	intron (NR_076392, intron 11 of 18)	7605	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
172682	chr4	2745751	2747150	+	0	NA	intron (NM_001292016, intron 2 of 4)	intron (NM_001292016, intron 2 of 4)	9886	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
79254	chr16	423721	424130	+	0	NA	Intergenic	Intergenic	-1724	NM_001370401	9727		NM_014700	ENSG00000090565	RAB11FIP3	CART1|FIP3|FIP3-Rab11|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding
41299	chr11	65870651	65871200	+	0	NA	intron (NM_016938, intron 4 of 10)	intron (NM_016938, intron 4 of 10)	1875	NM_016938	30008		NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin extracellular matrix protein 2	protein-coding
45291	chr11	118053101	118053700	+	0	NA	intron (NM_001354434, intron 2 of 5)	L2b|LINE|L2	-23612	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
238615	chrX	153944001	153945350	+	0	NA	promoter-TSS (NM_002910)	promoter-TSS (NM_002910)	-32	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
231418	chr9	131129771	131129930	+	0	NA	intron (NM_001318324, intron 4 of 35)	AluSz|SINE|Alu	4264	NM_001318324	8021		NM_005085	ENSG00000126883	NUP214	CAIN|CAN|IIAE9	nucleoporin 214	protein-coding
35679	chr11	1880801	1881280	+	0	NA	TTS (NR_107001)	TTS (NR_107001)	995	NR_107001	102465993		NR_107001	ENSG00000284594	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
189783	chr5	176681551	176681670	+	0	NA	Intergenic	AluSg|SINE|Alu	34126	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
31671	chr10	97429451	97429700	+	0	NA	intron (NM_001317079, intron 1 of 3)	intron (NM_001317079, intron 1 of 3)	1898	NM_001317079	5223		NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
186580	chr5	138496071	138497080	+	0	NA	Intergenic	AluY|SINE|Alu	31096	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
102803	chr17	76400021	76400480	+	0	NA	exon (NM_022066, exon 8 of 18)	exon (NM_022066, exon 8 of 18)	14972	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
34646	chr10	133324201	133324930	+	0	NA	3' UTR (NM_001321617, exon 6 of 6)	3' UTR (NM_001321617, exon 6 of 6)	-12228	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
183244	chr5	76401001	76401200	+	0	NA	Intergenic	Intergenic	-2185	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
9064	chr1	44828871	44829230	+	0	NA	exon (NM_003738, exon 11 of 22)	exon (NM_003738, exon 11 of 22)	13894	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
32257	chr10	102009671	102010180	+	0	NA	intron (NM_024541, intron 12 of 25)	intron (NM_024541, intron 12 of 25)	46248	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
192751	chr6	26420071	26420230	+	0	NA	Intergenic	Intergenic	-1241	NR_027795	54718		NM_024018	ENSG00000291104	BTN2A3P	BTN2.3|BTN2A3	butyrophilin subfamily 2 member A3, pseudogene	pseudo
129827	chr2	72272051	72272150	+	0	NA	intron (NR_135773, intron 19 of 21)	intron (NR_135773, intron 19 of 21)	-124238	NM_019885	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
80809	chr16	3454101	3454300	+	0	NA	intron (NM_001317093, intron 2 of 6)	intron (NM_001317093, intron 2 of 6)	-3845	NM_001317094	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
40077	chr11	62772921	62773750	+	0	NA	intron (NM_006473, intron 1 of 10)	AluSx4|SINE|Alu	1939	NM_006473	10629		NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
51908	chr12	53637651	53637930	+	0	NA	Intergenic	L1M4|LINE|L1	-11375	NM_001206682	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
16094	chr1	153565471	153565830	+	0	NA	5' UTR (NM_005978, exon 1 of 3)	5' UTR (NM_005978, exon 1 of 3)	194	NM_005978	6273		NM_005978	ENSG00000196754	S100A2	CAN19|S100L	S100 calcium binding protein A2	protein-coding
160848	chr3	33092751	33093250	+	0	NA	exon (NM_001039770, exon 2 of 2)	exon (NM_001039770, exon 2 of 2)	3832	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
31520	chr10	96789671	96789850	+	0	NA	Intergenic	Intergenic	39004	NR_030338	693192		NR_030338	ENSG00000207976	MIR607	MIRN607|hsa-mir-607	microRNA 607	ncRNA
156780	chr22	41899021	41899280	+	0	NA	intron (NM_004599, intron 15 of 18)	intron (NM_004599, intron 15 of 18)	-1794	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
38659	chr11	46383201	46383600	+	0	NA	TTS (NM_000741)	TTS (NM_000741)	1689	NM_001012333	4192		NM_002391	ENSG00000110492	MDK	ARAP|MK|NEGF2	midkine	protein-coding
159583	chr3	15062551	15063030	+	0	NA	intron (NR_135246, intron 1 of 4)	SVA_D|Retroposon|SVA	2525	NR_135247	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
84270	chr16	30060871	30061330	+	0	NA	intron (NM_001365304, intron 4 of 13)	intron (NM_001365304, intron 4 of 13)	-3179	NM_184043	226		NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase, fructose-bisphosphate A	protein-coding
47633	chr12	6199721	6200930	+	0	NA	promoter-TSS (NM_001769)	promoter-TSS (NM_001769)	-75	NM_001769	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
146781	chr20	50916571	50917130	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-7059	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
110219	chr19	1756401	1756700	+	0	NA	intron (NM_001080488, intron 1 of 1)	CpG	3044	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
150299	chr21	41996621	41996880	+	0	NA	intron (NM_020727, intron 1 of 1)	THE1B|LTR|ERVL-MaLR	-12444	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
63301	chr13	113988971	113989550	+	0	NA	intron (NM_001320822, intron 22 of 23).2	(TCCA)n|Simple_repeat|Simple_repeat	-15184	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
236822	chrX	79178101	79178300	+	0	NA	Intergenic	L1MA1|LINE|L1	33512	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
195968	chr6	41958451	41958950	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-16852	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
132163	chr2	101762951	101763250	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	64835	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
145237	chr20	38928721	38929000	+	0	NA	intron (NM_030919, intron 1 of 3)	intron (NM_030919, intron 1 of 3)	2443	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
104286	chr17	80846471	80846830	+	0	NA	intron (NM_020761, intron 11 of 33)	intron (NM_020761, intron 11 of 33)	-41018	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
19586	chr1	179298601	179299850	+	0	NA	intron (NR_045530, intron 1 of 13)	MIRb|SINE|MIR	5428	NM_003101	6646		NM_003101	ENSG00000057252	SOAT1	ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT	sterol O-acyltransferase 1	protein-coding
63972	chr14	22177071	22177230	+	0	NA	Intergenic	Intergenic	255603	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
174748	chr4	46841201	46841400	+	0	NA	intron (NM_130902, intron 2 of 2)	intron (NM_130902, intron 2 of 2)	67945	NM_130902	170712		NM_130902	ENSG00000170516	COX7B2	-	cytochrome c oxidase subunit 7B2	protein-coding
168554	chr3	146553951	146554350	+	0	NA	Intergenic	Intergenic	-9543	NM_021105	5359		NM_021105	ENSG00000188313	PLSCR1	MMTRA1B	phospholipid scramblase 1	protein-coding
127917	chr2	46347721	46348180	+	0	NA	intron (NM_001430, intron 2 of 15)	intron (NM_001430, intron 2 of 15)	46217	NR_146999	105374582		NR_146999	ENSG00000228100	LINC01820	-	long intergenic non-protein coding RNA 1820	ncRNA
39734	chr11	61792021	61793580	+	0	NA	promoter-TSS (NR_030342)	promoter-TSS (NR_030342)	-111	NM_004111	2237		NM_004111	ENSG00000168496	FEN1	FEN-1|MF1|RAD2	flap structure-specific endonuclease 1	protein-coding
77965	chr15	89371271	89372130	+	0	NA	intron (NR_133003, intron 1 of 6)	CpG	3601	NR_133003	254559		NR_015411	ENSG00000255571	MIR9-3HG	LINC00925|lnc-FANCI-2	MIR9-3 host gene	ncRNA
5769	chr1	26495651	26496300	+	0	NA	Intergenic	AluSx1|SINE|Alu	23535	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
170470	chr3	185930471	185930780	+	0	NA	intron (NM_004593, intron 1 of 8)	intron (NM_004593, intron 1 of 8)	7389	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
54706	chr12	93438351	93438750	+	0	NA	intron (NM_003348, intron 1 of 3)	L2a|LINE|L2	3397	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
143671	chr20	31995051	31995330	+	0	NA	exon (NM_001011718, exon 2 of 3)	exon (NM_001011718, exon 2 of 3)	-15248	NM_001365692	140706		NM_080625	ENSG00000101331	CCM2L	C20orf160|dJ310O13.5	CCM2 like scaffold protein	protein-coding
219895	chr8	85663751	85663850	+	0	NA	Intergenic	Intergenic	-1287	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
44977	chr11	116908101	116908580	+	0	NA	intron (NM_001366687, intron 4 of 4)	AluJo|SINE|Alu	-70390	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
62997	chr13	112341451	112341550	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-10275	NR_126345	104266956		NR_126345	ENSG00000223626	LINC01044	-	long intergenic non-protein coding RNA 1044	ncRNA
222112	chr8	131906421	131907080	+	0	NA	intron (NM_001323555, intron 1 of 22)	intron (NM_001323555, intron 1 of 22)	2657	NM_015137	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
208111	chr7	57539951	57540050	+	0	NA	Intergenic	L1HS|LINE|L1	89823	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
11665	chr1	91816621	91816880	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	69401	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
6241	chr1	27542651	27542950	+	0	NA	intron (NM_001029882, intron 6 of 6)	intron (NM_001029882, intron 6 of 6)	-52633	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
88088	chr16	81504551	81504650	+	0	NA	intron (NM_030629, intron 1 of 20)	AluSx1|SINE|Alu	9246	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
69481	chr14	95464621	95465080	+	0	NA	intron (NM_001384284, intron 4 of 8)	L1MEd|LINE|L1	35690	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
207063	chr7	39745821	39746680	+	0	NA	intron (NR_026999, intron 1 of 11)	intron (NR_026999, intron 1 of 11)	12682	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
89397	chr16	88815171	88817280	+	0	NA	intron (NM_000512, intron 13 of 13)	intron (NM_000512, intron 13 of 13)	-4297	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
91325	chr17	4374021	4374350	+	0	NA	Intergenic	AluJr4|SINE|Alu	-7511	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
26019	chr10	12265571	12266100	+	0	NA	Intergenic	Intergenic	69647	NM_006023	8872		NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
77990	chr15	89472851	89473030	+	0	NA	intron (NM_001321041, intron 9 of 10)	intron (NM_001321041, intron 9 of 10)	23643	NM_001321041	51458		NM_016321	ENSG00000140519	RHCG	C15orf6|PDRC2|RHGK|SLC42A3	Rh family C glycoprotein	protein-coding
210083	chr7	97003951	97004450	+	0	NA	intron (NR_015448, intron 1 of 2)	intron (NR_015448, intron 1 of 2)	-1353	NM_005222	1750		NM_005222	ENSG00000006377	DLX6	-	distal-less homeobox 6	protein-coding
82145	chr16	14826221	14826830	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-1823	NR_023387	730013		NR_023387	ENSG00000290943	ABCC6P2	-	ATP binding cassette subfamily C member 6 pseudogene 2	pseudo
153670	chr22	28955501	28956580	+	0	NA	intron (NM_032173, intron 1 of 8)	intron (NM_032173, intron 1 of 8)	38651	NM_032173	84133		NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
214506	chr7	150465771	150465930	+	0	NA	intron (NM_175571, intron 1 of 4)	MIRc|SINE|MIR	15220	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
190935	chr6	2886071	2886430	+	0	NA	intron (NR_110841, intron 2 of 4)	MSTB1|LTR|ERVL-MaLR	2262	NR_110841	101927730		NR_110841		SERPINB9-AS1	-	SERPINB9 antisense RNA 1	ncRNA
201181	chr6	143059651	143059800	+	0	NA	promoter-TSS (NM_001366362)	promoter-TSS (NM_001366362)	362	NM_001286587	51390		NM_016108	ENSG00000146416	AIG1	AIG-1|dJ95L4.1	androgen induced 1	protein-coding
91473	chr17	4886571	4886730	+	0	NA	intron (NM_015716, intron 10 of 30)	intron (NM_015716, intron 10 of 30)	-12886	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
116808	chr19	18538171	18538530	+	0	NA	exon (NM_001308373, exon 5 of 9)	exon (NM_001308373, exon 5 of 9)	5223	NM_012181	23770		NM_012181	ENSG00000105701	FKBP8	FKBP38|FKBPr38	FKBP prolyl isomerase 8	protein-coding
212385	chr7	128053201	128053400	+	0	NA	intron (NM_014390, intron 16 of 23)	intron (NM_014390, intron 16 of 23)	-21863	NM_022143	64101		NM_022143	ENSG00000128594	LRRC4	NAG14|NGL-2	leucine rich repeat containing 4	protein-coding
11690	chr1	91846721	91846980	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	39301	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
152413	chr22	20566511	20567750	+	0	NA	intron (NM_001003891, intron 7 of 17)	intron (NM_001003891, intron 7 of 17)	59083	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
155884	chr22	39517701	39517900	+	0	NA	non-coding (NR_130789, exon 6 of 6)	non-coding (NR_130789, exon 6 of 6)	-2759	NM_001675	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
190502	chr5	180373001	180373650	+	0	NA	Intergenic	L1M5|LINE|L1	-19989	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
112493	chr19	6455221	6455680	+	0	NA	intron (NM_024103, intron 4 of 9)	intron (NM_024103, intron 4 of 9)	4342	NM_024103	79085		NM_024103	ENSG00000125648	SLC25A23	APC2|MCSC2|SCAMC3|SCaMC-3	solute carrier family 25 member 23	protein-coding
198256	chr6	99458371	99458530	+	0	NA	TTS (NM_001346030)	TTS (NM_001346030)	-33105	NM_001322413	25957		NM_015491	ENSG00000132424	PNISR	C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2	PNN interacting serine and arginine rich protein	protein-coding
228657	chr9	107273971	107274600	+	0	NA	Intergenic	MER73|LTR|ERVL	-8994	NM_002874	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
71631	chr14	106727671	106728250	+	0	NA	Intergenic	Intergenic	123039	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
75639	chr15	67228401	67228600	+	0	NA	intron (NM_024666, intron 5 of 9)	L1PA15|LINE|L1	26161	NM_024666	79719		NM_024666	ENSG00000103591	AAGAB	KPPP1|PPKP1|PPKP1A|p34	alpha and gamma adaptin binding protein	protein-coding
211116	chr7	102519271	102519530	+	0	NA	Intergenic	AluJr|SINE|Alu	-1623	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
17931	chr1	160292651	160292750	+	0	NA	intron (NM_001098398, intron 27 of 32)	MIR|SINE|MIR	-7549	NR_036492	5824		NM_002857	ENSG00000162735	PEX19	D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1	peroxisomal biogenesis factor 19	protein-coding
48982	chr12	13097801	13099580	+	0	NA	intron (NM_001367358, intron 1 of 6)	intron (NM_001367358, intron 1 of 6)	-3015	NM_031289	83445		NM_031289	ENSG00000111305	GSG1	-	germ cell associated 1	protein-coding
118569	chr19	36217701	36218350	+	0	NA	intron (NM_001099638, intron 1 of 2)	AluSx|SINE|Alu	2919	NM_007145	7705		NM_007145	ENSG00000167635	ZNF146	OZF	zinc finger protein 146	protein-coding
167425	chr3	129025771	129025930	+	0	NA	intron (NM_024768, intron 2 of 7)	intron (NM_024768, intron 2 of 7)	-21848	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
89199	chr16	88587701	88587900	+	0	NA	intron (NM_001294340, intron 4 of 18)	intron (NM_001294340, intron 4 of 18)	17397	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
111610	chr19	4107271	4107650	+	0	NA	intron (NM_030662, intron 3 of 10)	AluY|SINE|Alu	16662	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
151690	chr22	17216121	17217880	+	0	NA	intron (NM_001282225, intron 1 of 9)	HAL1ME|LINE|L1	2435	NM_001282225	51816		NM_017424	ENSG00000093072	ADA2	ADGF|CECR1|IDGFL|PAN|SNEDS|VAIHS	adenosine deaminase 2	protein-coding
25044	chr10	3769221	3770000	+	0	NA	Intergenic	Intergenic	15599	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
27364	chr10	30748751	30749050	+	0	NA	Intergenic	Intergenic	25681	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
149152	chr21	17800801	17801330	+	0	NA	intron (NM_017447, intron 2 of 4)	L1PA7|LINE|L1	-8556	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
8817	chr1	42950471	42950850	+	0	NA	intron (NM_006516, intron 1 of 9)	MIR3|SINE|MIR	8208	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
141691	chr2	241813501	241814450	+	0	NA	intron (NM_001167602, intron 2 of 4).2	intron (NM_001167602, intron 2 of 4).2	2579	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
124782	chr2	7432271	7432430	+	0	NA	intron (NR_038432, intron 4 of 5)	intron (NR_038432, intron 4 of 5)	11089	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
232280	chr9	134437451	134437750	+	0	NA	3' UTR (NM_002957, exon 10 of 10)	3' UTR (NM_002957, exon 10 of 10)	31040	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
228907	chr9	113059501	113059800	+	0	NA	Intergenic	Intergenic	-2926	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
104663	chr17	81486401	81486930	+	0	NA	Intergenic	L1MB4|LINE|L1	26134	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
39472	chr11	60989421	60989700	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	17880	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
107101	chr18	35052251	35052430	+	0	NA	intron (NR_046177, intron 1 of 6)	L1ME1|LINE|L1	10927	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
33792	chr10	123141121	123141380	+	0	NA	Intergenic	Intergenic	5280	NM_001105574	340784		NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
118680	chr19	37902551	37903730	+	0	NA	intron (NM_031951, intron 1 of 5)	intron (NM_031951, intron 1 of 5)	3454	NM_001291088	83889		NM_031951	ENSG00000171804	WDR87	NYD-SP11	WD repeat domain 87	protein-coding
25552	chr10	7481371	7481530	+	0	NA	Intergenic	Intergenic	-69964	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
153124	chr22	23714051	23714780	+	0	NA	intron (NR_024448, intron 2 of 11)	intron (NR_024448, intron 2 of 11)	3008	NR_024448	91316		NR_024448	ENSG00000228315	GUSBP11	-	GUSB pseudogene 11	pseudo
180022	chr5	1045951	1046050	+	0	NA	Intergenic	Intergenic	16974	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
218186	chr8	41994071	41994580	+	0	NA	intron (NM_001305878, intron 2 of 13)	L2a|LINE|L2	-57425	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
56605	chr12	118063801	118064000	+	0	NA	3' UTR (NM_019086, exon 9 of 9)	3' UTR (NM_019086, exon 9 of 9)	-1726	NM_001278557	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
67121	chr14	68506371	68507500	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	121852	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
163085	chr3	50091701	50092200	+	0	NA	intron (NR_036627, intron 2 of 23)	intron (NR_036627, intron 2 of 23)	3031	NM_005778	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
122960	chr19	50777571	50778650	+	0	NA	Intergenic	L1ME4b|LINE|L1	7646	NM_001506	2854		NM_001506	ENSG00000142511	GPR32	DRV1|RVDR1	G protein-coupled receptor 32	protein-coding
84750	chr16	30963701	30965400	+	0	NA	intron (NM_014712, intron 6 of 18)	intron (NM_014712, intron 6 of 18)	6796	NM_014712	9739		NM_014712	ENSG00000099381	SETD1A	EPEDD|EPEO2|KMT2F|NEDSID|Set1|Set1A	SET domain containing 1A, histone lysine methyltransferase	protein-coding
142138	chr20	2746801	2747000	+	0	NA	intron (NR_138537, intron 7 of 17)	intron (NR_138537, intron 7 of 17)	53727	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
106466	chr18	14129451	14129750	+	0	NA	intron (NM_145287, intron 1 of 2)	intron (NM_145287, intron 1 of 2)	2835	NM_145287	162655		NM_145287	ENSG00000175322	ZNF519	HsT2362	zinc finger protein 519	protein-coding
154291	chr22	31749451	31750750	+	0	NA	promoter-TSS (NM_173566)	promoter-TSS (NM_173566)	32	NM_173566	253143		NM_173566	ENSG00000183530	PRR14L	C22orf30	proline rich 14 like	protein-coding
114211	chr19	11438601	11439000	+	0	NA	intron (NM_001001329, intron 5 of 17)	intron (NM_001001329, intron 5 of 17)	-3018	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
57452	chr12	121916271	121916430	+	0	NA	non-coding (NR_048555, exon 5 of 5)	non-coding (NR_048555, exon 5 of 5)	-2242	NM_144668	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
32777	chr10	104351151	104351500	+	0	NA	TTS (NR_108036)	TTS (NR_108036)	2250	NR_108036	100505869		NR_108036	ENSG00000231233	CFAP58-DT	CCDC147-AS1|CFAP58-AS1|lncITPRIP-1	CFAP58 divergent transcript	ncRNA
216238	chr8	12196901	12197350	+	0	NA	intron (NR_146925, intron 2 of 3)	AluSc|SINE|Alu	-2992	NR_148876	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
187295	chr5	141596201	141596600	+	0	NA	intron (NM_005219, intron 1 of 27)	AluSz6|SINE|Alu	22600	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
197551	chr6	79095151	79095450	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-17046	NM_017934	55023		NM_017934	ENSG00000146247	PHIP	BRWD2|CHUJANS|DCAF14|DIDOD|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding
177328	chr4	109754171	109755180	+	0	NA	intron (NM_001375280, intron 6 of 12)	intron (NM_001375280, intron 6 of 12)	-24605	NM_030821	81579		NM_030821	ENSG00000123739	PLA2G12A	GXII|PLA2G12|ROSSY	phospholipase A2 group XIIA	protein-coding
221759	chr8	127798351	127798730	+	0	NA	intron (NR_003367, intron 1 of 8)	intron (NR_003367, intron 1 of 8)	2578	NR_031609	100302185		NR_031609	ENSG00000283710	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
165776	chr3	105777021	105777750	+	0	NA	intron (NM_001321811, intron 3 of 16)	AluJb|SINE|Alu	90206	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
129321	chr2	68723701	68724300	+	0	NA	Intergenic	AluJb|SINE|Alu	-10811	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
48791	chr12	11771321	11771580	+	0	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	121776	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
60185	chr13	40315301	40316230	+	0	NA	Intergenic	Intergenic	-95263	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
100152	chr17	58532971	58533130	+	0	NA	promoter-TSS (NM_080415)	promoter-TSS (NM_080415)	-966	NM_080416	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
151946	chr22	19119721	19120350	+	0	NA	intron (NM_001184781, intron 1 of 9)	intron (NM_001184781, intron 1 of 9)	2377	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
232334	chr9	135415271	135415430	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	56899	NR_038969	100506599		NR_038969	ENSG00000225361	PPP1R26-AS1	-	PPP1R26 antisense RNA 1	ncRNA
67828	chr14	73851721	73853080	+	0	NA	intron (NM_001371328, intron 1 of 8)	AluSc8|SINE|Alu	453	NM_001146155	145482		NM_152444	ENSG00000140043	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
16968	chr1	155946081	155947680	+	0	NA	TTS (NM_001350112)	TTS (NM_001350112)	4456	NR_106796	102465442		NR_106796	ENSG00000277817	MIR6738	hsa-mir-6738	microRNA 6738	ncRNA
15875	chr1	151461821	151462080	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-2456	NM_001194938	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
144290	chr20	34701171	34701530	+	0	NA	Intergenic	AluY|SINE|Alu	-2994	NM_021202	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
104764	chr17	81699401	81699600	+	0	NA	intron (NM_004712, intron 18 of 21)	AluSx1|SINE|Alu	-3867	NM_002949	6182		NM_002949	ENSG00000262814	MRPL12	5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12|bL12m	mitochondrial ribosomal protein L12	protein-coding
33981	chr10	124663421	124663880	+	0	NA	intron (NM_014661, intron 4 of 4)	MER5A1|DNA|hAT-Charlie	-40378	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
232001	chr9	133352921	133353350	+	0	NA	intron (NM_001280787, intron 4 of 7)	intron (NM_001280787, intron 4 of 7)	2289	NR_000016	26813		NR_000016	ENSG00000252542	SNORD36C	RNU36C|U36c	small nucleolar RNA, C/D box 36C	snoRNA
57234	chr12	121539201	121539600	+	0	NA	intron (NM_001005366, intron 6 of 22)	intron (NM_001005366, intron 6 of 22)	40846	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
95556	chr17	36849801	36850200	+	0	NA	Intergenic	Intergenic	86661	NR_135670	102723471		NR_135668	ENSG00000277268	LHX1-DT	lnc-ACACA-1	LHX1 divergent transcript	ncRNA
156852	chr22	41999821	42000300	+	0	NA	intron (NM_152613, intron 1 of 5)	intron (NM_152613, intron 1 of 5)	1272	NM_152613	164684		NM_152613	ENSG00000183066	WBP2NL	GRAMD7|PAWP	WBP2 N-terminal like	protein-coding
74218	chr15	56244601	56245200	+	0	NA	5' UTR (NM_001370561, exon 1 of 12)	5' UTR (NM_001370561, exon 1 of 12)	182	NM_001370561	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
91060	chr17	3003901	3004700	+	0	NA	intron (NM_001100398, intron 13 of 23)	intron (NM_001100398, intron 13 of 23)	-38405	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
223700	chr8	144434101	144434400	+	0	NA	promoter-TSS (NR_109770)	promoter-TSS (NR_109770)	-918	NR_109770	100287098		NR_109770		TONSL-AS1	-	TONSL antisense RNA 1	ncRNA
27928	chr10	41912601	41912900	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	455295	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
106498	chr18	14997051	14997150	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-26632	NR_110783	101927642		NR_110783	ENSG00000264301	LINC01444	-	long intergenic non-protein coding RNA 1444	ncRNA
125456	chr2	12176851	12177330	+	0	NA	intron (NR_110196, intron 3 of 5)	intron (NR_110196, intron 3 of 5)	-22040	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
98576	chr17	47720811	47722050	+	0	NA	Intergenic	Intergenic	-11806	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
137605	chr2	197293381	197295130	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	8264	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
211733	chr7	107147271	107147830	+	0	NA	intron (NM_002736, intron 6 of 10)	MER5A1|DNA|hAT-Charlie	-21411	NM_001244262	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
36745	chr11	9311201	9311730	+	0	NA	intron (NM_001165030, intron 1 of 2)	intron (NM_001165030, intron 1 of 2)	3128	NM_015012	440026		NM_015012	ENSG00000166471	TMEM41B	-	transmembrane protein 41B	protein-coding
18855	chr1	167723971	167724130	+	0	NA	intron (NM_001146191, intron 1 of 2)	FLAM_A|SINE|Alu	2068	NM_024569	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
171157	chr3	195623571	195624050	+	0	NA	Intergenic	Intergenic	28349	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
34428	chr10	132412871	132413030	+	0	NA	intron (NM_138499, intron 2 of 2)	L1MC5|LINE|L1	15750	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
73494	chr15	43753521	43753930	+	0	NA	intron (NM_005313, intron 1 of 12)	intron (NM_005313, intron 1 of 12)	7287	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
5405	chr1	25520351	25521450	+	0	NA	Intergenic	Intergenic	-22706	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
209405	chr7	76336121	76336530	+	0	NA	intron (NM_012479, intron 1 of 1)	L1MC1|LINE|L1	22666	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
194755	chr6	33923701	33924450	+	0	NA	Intergenic	Intergenic	24940	NR_106982	102466816		NR_106982	ENSG00000276824	MIR7159	hsa-mir-7159	microRNA 7159	ncRNA
91095	chr17	3647721	3648050	+	0	NA	intron (NM_001374496, intron 3 of 9)	intron (NM_001374496, intron 3 of 9)	11125	NM_004937	1497		NM_004937	ENSG00000040531	CTNS	CTNS-LSB|PQLC4|SLC66A4	cystinosin, lysosomal cystine transporter	protein-coding
59467	chr13	26050851	26051150	+	0	NA	5' UTR (NM_001007538, exon 1 of 2)	5' UTR (NM_001007538, exon 1 of 2)	1016	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
219722	chr8	81025551	81025950	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	86318	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
79615	chr16	1096271	1096630	+	0	NA	promoter-TSS (NM_207419)	promoter-TSS (NM_207419)	-206	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
89027	chr16	88366171	88366330	+	0	NA	Intergenic	Intergenic	-16709	NM_001367624	84627		NM_001127464	ENSG00000225614	ZNF469	BCS|BCS1|Zfp469	zinc finger protein 469	protein-coding
213012	chr7	131014651	131014950	+	0	NA	intron (NR_109850, intron 3 of 5)	MER3|DNA|hAT-Charlie	92230	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
193235	chr6	29917801	29918000	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	9315	NR_001317	80868		NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B	ncRNA
61682	chr13	74026651	74027650	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	106779	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
132310	chr2	105325001	105325200	+	0	NA	intron (NM_001328646, intron 1 of 11)	intron (NM_001328646, intron 1 of 11)	4556	NR_137328	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
137955	chr2	201138071	201138300	+	0	NA	3' UTR (NM_001308043, exon 5 of 5)	3' UTR (NM_001308043, exon 5 of 5)	-2090	NM_001202515	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
79774	chr16	1372421	1372880	+	0	NA	intron (NM_001372107, intron 10 of 14)	intron (NM_001372107, intron 10 of 14)	7002	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
55836	chr12	109020851	109021150	+	0	NA	promoter-TSS (NM_018711)	promoter-TSS (NM_018711)	68	NM_018711	55530		NM_018711	ENSG00000166111	SVOP	SLC22B4	SV2 related protein	protein-coding
211634	chr7	106110651	106110750	+	0	NA	intron (NR_167730, intron 1 of 5)	intron (NR_167730, intron 1 of 5)	1612	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
70650	chr14	102931871	102932030	+	0	NA	TTS (NM_006035)	TTS (NM_006035)	9287	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
8515	chr1	40978271	40978550	+	0	NA	Intergenic	L2b|LINE|L2	-1286	NR_125440	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
180944	chr5	34931151	34931250	+	0	NA	intron (NM_001012339, intron 1 of 11)	intron (NM_001012339, intron 1 of 11)	1641	NM_001348420	134218		NM_194283	ENSG00000168724	DNAJC21	BMFS3|DNAJA5|GS3|JJJ1	DnaJ heat shock protein family (Hsp40) member C21	protein-coding
52762	chr12	56667671	56668030	+	0	NA	intron (NM_001282602, intron 4 of 6)	AluSq2|SINE|Alu	20434	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
214381	chr7	149770551	149770850	+	0	NA	intron (NM_207336, intron 2 of 4)	intron (NM_207336, intron 2 of 4)	2888	NM_207336	168544		NM_207336	ENSG00000181444	ZNF467	EZI|Zfp467	zinc finger protein 467	protein-coding
28572	chr10	50741051	50741150	+	0	NA	intron (NM_001321959, intron 1 of 5)	MER3|DNA|hAT-Charlie	1164	NM_001321960	653308		NM_001079516	ENSG00000204147	ASAH2B	ASAH2C|ASAH2L|bA449O16.3|bA98I6.3	N-acylsphingosine amidohydrolase 2B	protein-coding
86379	chr16	66597101	66597600	+	0	NA	Intergenic	AluJr|SINE|Alu	-6646	NM_144601	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
774	chr1	1527001	1527400	+	0	NA	intron (NM_018188, intron 13 of 15)	intron (NM_018188, intron 13 of 15)	13424	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
196843	chr6	47376971	47377130	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-67145	NM_014452	27242		NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
202233	chr6	156826401	156826880	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-46909	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
16324	chr1	154219071	154219450	+	0	NA	promoter-TSS (NM_001127320)	promoter-TSS (NM_001127320)	-912	NM_001127320	9898		NM_014847	ENSG00000143569	UBAP2L	NEDLBF|NICE-4|NICE4	ubiquitin associated protein 2 like	protein-coding
31869	chr10	100170371	100170530	+	0	NA	intron (NM_006459, intron 6 of 10)	intron (NM_006459, intron 6 of 10)	15579	NM_001100626	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
35861	chr11	2377901	2378700	+	0	NA	promoter-TSS (NR_108080)	promoter-TSS (NR_108080)	-308	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
236795	chrX	79147721	79148180	+	0	NA	intron (NM_032553, intron 1 of 2)	intron (NM_032553, intron 1 of 2)	3262	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
145169	chr20	38857101	38857300	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	51503	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
116977	chr19	18876151	18876800	+	0	NA	intron (NM_021267, intron 6 of 7)	AluJr|SINE|Alu	19683	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
96664	chr17	40678971	40679350	+	0	NA	Intergenic	Intergenic	-13983	NM_152349	125113		NM_152349	ENSG00000213424	KRT222	KA21|KRT222P	keratin 222	protein-coding
221931	chr8	129873651	129874150	+	0	NA	intron (NM_001353280, intron 4 of 12)	intron (NM_001353280, intron 4 of 12)	65911	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
5095	chr1	24749021	24749830	+	0	NA	intron (NM_013943, intron 1 of 5)	intron (NM_013943, intron 1 of 5)	3978	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
113919	chr19	10704701	10705300	+	0	NA	intron (NM_031209, intron 3 of 9)	AluSx1|SINE|Alu	3561	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
147272	chr20	57480621	57481280	+	0	NA	Intergenic	Intergenic	43917	NM_001269052	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
54223	chr12	79931451	79931830	+	0	NA	intron (NM_001143885, intron 2 of 25)	intron (NM_001143885, intron 2 of 25)	3311	NM_001244992	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
153999	chr22	30401021	30401530	+	0	NA	intron (NM_033382, intron 2 of 10)	AluSx1|SINE|Alu	4257	NM_001291932	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
175841	chr4	78658051	78658600	+	0	NA	intron (NR_038306, intron 2 of 2)	intron (NR_038306, intron 2 of 2)	12331	NR_038304	100505702		NR_038303		LINC01094	CTEPHA1	long intergenic non-protein coding RNA 1094	ncRNA
137861	chr2	200826151	200826250	+	0	NA	3' UTR (NM_001321693, exon 11 of 11)	3' UTR (NM_001321693, exon 11 of 11)	13814	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
139708	chr2	227510001	227510600	+	0	NA	intron (NM_001135189, intron 2 of 11)	MLT1O|LTR|ERVL-MaLR	38144	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
35168	chr11	771901	772100	+	0	NA	intron (NM_001318824, intron 4 of 6)	intron (NM_001318824, intron 4 of 6)	5487	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
122648	chr19	49852921	49853180	+	0	NA	intron (NM_017432, intron 1 of 12)	intron (NM_017432, intron 1 of 12)	-1374	NR_040037	100506033		NR_040037	ENSG00000268006	PTOV1-AS1	-	PTOV1 antisense RNA 1	ncRNA
204537	chr7	4871071	4871430	+	0	NA	intron (NM_018059, intron 2 of 14)	intron (NM_018059, intron 2 of 14)	-9220	NM_020144	56903		NM_020144	ENSG00000218823	PAPOLB	PAPT|TPAP	poly(A) polymerase beta	protein-coding
134539	chr2	143714201	143714400	+	0	NA	intron (NM_018460, intron 13 of 13)	THE1A-int|LTR|ERVL-MaLR	-222767	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
35400	chr11	1385451	1385980	+	0	NA	Intergenic	AluJo|SINE|Alu	-4219	NR_046331	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
210632	chr7	100455951	100457080	+	0	NA	TTS (NM_001004323)	TTS (NM_001004323)	7745	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
146302	chr20	49178201	49178400	+	0	NA	intron (NM_001319135, intron 2 of 14)	intron (NM_001319135, intron 2 of 14)	10034	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
87906	chr16	78925071	78925330	+	0	NA	intron (NM_016373, intron 8 of 8)	AluJb|SINE|Alu	675537	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
158770	chr3	9409301	9409500	+	0	NA	intron (NM_001349451, intron 1 of 25)	L1MC5|LINE|L1	11785	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
175396	chr4	70803101	70803330	+	0	NA	intron (NM_001037442, intron 16 of 17)	intron (NM_001037442, intron 16 of 17)	36046	NM_001098477	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
98772	chr17	48125051	48125350	+	0	NA	Intergenic	AluSx1|SINE|Alu	17434	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
227733	chr9	93060701	93061530	+	0	NA	intron (NM_001287007, intron 1 of 2)	intron (NM_001287007, intron 1 of 2)	2414	NM_001287007	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
181942	chr5	54994151	54994250	+	0	NA	Intergenic	Intergenic	-8607	NM_001135604	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
140245	chr2	231926251	231927600	+	0	NA	promoter-TSS (NM_024409)	promoter-TSS (NM_024409)	-529	NM_024409	4880		NM_024409	ENSG00000163273	NPPC	CNP|CNP2	natriuretic peptide C	protein-coding
142027	chr20	1664921	1665880	+	0	NA	Intergenic	Intergenic	-7621	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
76048	chr15	72271951	72273650	+	0	NA	promoter-TSS (NM_001323531)	promoter-TSS (NM_001323531)	-246	NR_136604	56965		NM_020213	ENSG00000137817	PARP6	ARTD17|PARP-6-B1|PARP-6-C|pART17	poly(ADP-ribose) polymerase family member 6	protein-coding
174510	chr4	39976071	39977000	+	0	NA	exon (NM_001100400, exon 2 of 16)	exon (NM_001100400, exon 2 of 16)	1376	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
64159	chr14	22913751	22914530	+	0	NA	intron (NM_001352764, intron 1 of 14)	AluSc|SINE|Alu	5009	NM_001352765	55147		NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding
225290	chr9	34517551	34518280	+	0	NA	intron (NM_012144, intron 19 of 19)	intron (NM_012144, intron 19 of 19)	5075	NM_198573	375704		NM_198573	ENSG00000168913	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
219526	chr8	74948121	74948380	+	0	NA	Intergenic	L1PA2|LINE|L1	-36255	NM_031461	83690		NM_031461	ENSG00000121005	CRISPLD1	CRISP-10|CRISP10|LCRISP1	cysteine rich secretory protein LCCL domain containing 1	protein-coding
188327	chr5	151222951	151223500	+	0	NA	intron (NR_160730, intron 3 of 3)	intron (NR_160730, intron 3 of 3)	867	NM_015621	26112		NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
26340	chr10	15197271	15197630	+	0	NA	Intergenic	Intergenic	-28757	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
188243	chr5	151033301	151033500	+	0	NA	intron (NM_001252385, intron 16 of 17)	intron (NM_001252385, intron 16 of 17)	12809	NM_002084	2878		NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
177686	chr4	121818351	121818650	+	0	NA	intron (NM_001237, intron 6 of 7)	MER8|DNA|TcMar-Tigger	5383	NM_001237	890		NM_001237	ENSG00000145386	CCNA2	CCN1|CCNA	cyclin A2	protein-coding
148771	chr21	8201421	8201700	+	0	NA	intron (NR_038958, intron 2 of 6)	L1PREC2|LINE|L1	-3755	NR_128716	103504739		NR_128716	ENSG00000277379	MIR6724-3	hsa-mir-6724-3	microRNA 6724-3	ncRNA
77492	chr15	84603971	84604130	+	0	NA	exon (NM_001007072, exon 2 of 3)	exon (NM_001007072, exon 2 of 3)	3041	NM_017894	54993		NM_017894	ENSG00000176371	ZSCAN2	ZFP29|ZNF854	zinc finger and SCAN domain containing 2	protein-coding
51162	chr12	50187171	50187730	+	0	NA	intron (NM_001113547, intron 6 of 7)	intron (NM_001113547, intron 6 of 7)	14083	NM_001243775	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
28776	chr10	62052371	62052530	+	0	NA	intron (NM_001244638, intron 2 of 6)	intron (NM_001244638, intron 2 of 6)	3093	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
147129	chr20	54174101	54174800	+	0	NA	promoter-TSS (NM_000782)	promoter-TSS (NM_000782)	-464	NM_001128915	1591		NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|HCINF1|P450-CC24	cytochrome P450 family 24 subfamily A member 1	protein-coding
162737	chr3	49037501	49037700	+	0	NA	intron (NM_001320580, intron 7 of 10)	AluSx1|SINE|Alu	-8202	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
90604	chr17	1626751	1626850	+	0	NA	intron (NM_152346, intron 2 of 13).2	intron (NM_152346, intron 2 of 13).2	1616	NM_001321365	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
92919	chr17	16568501	16569750	+	0	NA	promoter-TSS (NM_020653)	promoter-TSS (NM_020653)	79	NM_020653	57336		NM_020653	ENSG00000141040	ZNF287	ZKSCAN13|ZSCAN45	zinc finger protein 287	protein-coding
52566	chr12	56160031	56161330	+	0	NA	intron (NM_021019, intron 6 of 6)	intron (NM_021019, intron 6 of 6)	2321	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
174767	chr4	47562321	47562580	+	0	NA	intron (NM_020453, intron 14 of 22)	L1PB4|LINE|L1	77175	NM_020453	57205		NM_020453	ENSG00000145246	ATP10D	ATPVD	ATPase phospholipid transporting 10D (putative)	protein-coding
109245	chr19	513671	514100	+	0	NA	intron (NM_033513, intron 1 of 1)	intron (NM_033513, intron 1 of 1)	6388	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
133181	chr2	112920701	112921350	+	0	NA	Intergenic	Intergenic	5832	NM_173205	27178		NM_014439	ENSG00000125571	IL37	FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-23|IL-37|IL1F7|IL1H4|IL1RP1	interleukin 37	protein-coding
75331	chr15	65355301	65355980	+	0	NA	intron (NM_004884, intron 2 of 13)	CpG	22362	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
71339	chr14	105423851	105424150	+	0	NA	intron (NM_001203258, intron 1 of 20)	intron (NM_001203258, intron 1 of 20)	4173	NM_001203258	9112		NM_004689	ENSG00000182979	MTA1	-	metastasis associated 1	protein-coding
32531	chr10	103053951	103055050	+	0	NA	intron (NM_017649, intron 3 of 7)	intron (NM_017649, intron 3 of 7)	99321	NM_001351191	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
69765	chr14	99164971	99165980	+	0	NA	Intergenic	Intergenic	106722	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
124807	chr2	7534921	7535180	+	0	NA	Intergenic	L1PB1|LINE|L1	113789	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
227634	chr9	92886571	92887830	+	0	NA	non-coding (NR_111003, exon 4 of 4)	non-coding (NR_111003, exon 4 of 4)	4633	NR_111003	642943		NR_111003		LOC642943	-	SPATA31 subfamily A pseudogene	pseudo
195947	chr6	41932071	41932230	+	0	NA	intron (NM_004053, intron 6 of 6)	intron (NM_004053, intron 6 of 6)	9658	NM_001760	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
164369	chr3	58177451	58179080	+	0	NA	Intergenic	Intergenic	-7630	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
228422	chr9	99498901	99499130	+	0	NA	Intergenic	L1HS|LINE|L1	-123758	NR_102271	100996569		NR_102270	ENSG00000271086	NAMA	-	non-protein coding RNA, associated with MAP kinase pathway and growth arrest	ncRNA
150026	chr21	37263901	37264380	+	0	NA	intron (NM_006052, intron 1 of 7)	intron (NM_006052, intron 1 of 7)	3194	NM_006052	10311		NM_006052	ENSG00000157538	VPS26C	DCRA|DSCR3|DSCRA	VPS26 endosomal protein sorting factor C	protein-coding
202421	chr6	157897421	157897680	+	0	NA	intron (NM_016224, intron 5 of 17)	AluSq|SINE|Alu	74304	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
172339	chr4	1698371	1698530	+	0	NA	intron (NM_006527, intron 5 of 7)	intron (NM_006527, intron 5 of 7)	13869	NM_001306075	7884		NM_006527	ENSG00000163950	SLBP	HBP	stem-loop histone mRNA binding protein	protein-coding
167316	chr3	128729071	128730430	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	3567	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
160867	chr3	33430021	33430400	+	0	NA	intron (NM_014517, intron 1 of 15)	intron (NM_014517, intron 1 of 15)	10168	NM_001128160	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
120309	chr19	43498871	43499030	+	0	NA	intron (NM_198850, intron 4 of 15)	L2c|LINE|L2	5883	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
115873	chr19	16565251	16565350	+	0	NA	intron (NM_024881, intron 4 of 5)	AluSq|SINE|Alu	7115	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
63470	chr13	114145421	114145950	+	0	NA	Intergenic	Intergenic	-13062	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
6073	chr1	27151771	27152830	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	2825	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
191165	chr6	4907671	4908080	+	0	NA	intron (NM_001368126, intron 2 of 6)	intron (NM_001368126, intron 2 of 6)	17835	NM_001143971	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
69790	chr14	99188501	99190280	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	82807	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
217931	chr8	38085921	38086480	+	0	NA	Intergenic	HERV1_I-int|LTR|ERV1	-19293	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
163553	chr3	51706421	51707430	+	0	NA	promoter-TSS (NM_001349116)	promoter-TSS (NM_001349116)	-143	NM_001349116	2912		NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate metabotropic receptor 2	protein-coding
86520	chr16	67153801	67154330	+	0	NA	TTS (NM_003789)	TTS (NM_003789)	-3067	NM_033309	84752		NM_033309	ENSG00000237172	B3GNT9	-	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding
135821	chr2	170397151	170397250	+	0	NA	intron (NR_045682, intron 16 of 35)	intron (NR_045682, intron 16 of 35)	-46257	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
116124	chr19	17325101	17325830	+	0	NA	intron (NM_020959, intron 16 of 17)	intron (NM_020959, intron 16 of 17)	9390	NM_020959	57719		NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
30227	chr10	74964771	74965130	+	0	NA	intron (NM_001370135, intron 4 of 9).2	L2c|LINE|L2	52164	NR_134476								
227116	chr9	85939551	85939650	+	0	NA	Intergenic	AluSg4|SINE|Alu	-1542	NM_001321881	60560		NM_021929	ENSG00000135040	NAA35	EGAP|MAK10|MAK10P|bA379P1.1	N-alpha-acetyltransferase 35, NatC auxiliary subunit	protein-coding
190706	chr6	235971	237400	+	0	NA	Intergenic	Intergenic	-31201	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
172033	chr4	998401	998780	+	0	NA	intron (NR_110313, intron 2 of 13)	intron (NR_110313, intron 2 of 13)	-1120	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
127610	chr2	42989751	42990050	+	0	NA	Intergenic	L1PA3|LINE|L1	49643	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
164063	chr3	53884451	53885180	+	0	NA	3' UTR (NM_021237, exon 5 of 5)	3' UTR (NM_021237, exon 5 of 5)	-2663	NM_022899	93973		NM_022899	ENSG00000113812	ACTR8	ARP8|INO80N|hArp8	actin related protein 8	protein-coding
87337	chr16	70300451	70300550	+	0	NA	intron (NM_001257175, intron 1 of 8)	AluJb|SINE|Alu	1314	NM_007242	11269		NM_007242	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD-box helicase 19B	protein-coding
165465	chr3	98732171	98732330	+	0	NA	promoter-TSS (NM_006100)	promoter-TSS (NM_006100)	14	NM_001271146	10402		NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
79930	chr16	1739721	1740450	+	0	NA	intron (NM_015133, intron 4 of 31)	intron (NM_015133, intron 4 of 31)	5100	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
224169	chr9	5186501	5187280	+	0	NA	Intergenic	Intergenic	-1251	NM_007179	11172		NM_007179	ENSG00000120210	INSL6	RIF1	insulin like 6	protein-coding
239025	chrY	3002501	3003530	+	0	NA	promoter-TSS (NR_144458)	promoter-TSS (NR_144458)	19	NR_046502	100873962		NR_046502	ENSG00000231535	LINC00278	NCRNA00278|YY1BM	long intergenic non-protein coding RNA 278	ncRNA
106775	chr18	23825801	23826580	+	0	NA	intron (NM_198129, intron 21 of 74)	intron (NM_198129, intron 21 of 74)	-46830	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
7099	chr1	32106301	32106700	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1556	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
48266	chr12	8644001	8645430	+	0	NA	Intergenic	Intergenic	18111	NM_003480	8076		NM_003480	ENSG00000197614	MFAP5	AAT9|MAGP-2|MAGP2|MFAP-5|MP25	microfibril associated protein 5	protein-coding
147994	chr20	63017671	63017830	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	8367	NR_033370	63930		NR_033370	ENSG00000272259	LINC01749	-	long intergenic non-protein coding RNA 1749	ncRNA
14008	chr1	120716421	120716680	+	0	NA	Intergenic	Intergenic	-7389	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
70417	chr14	102021401	102021830	+	0	NA	intron (NM_001376, intron 42 of 77)	intron (NM_001376, intron 42 of 77)	57042	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
233715	chrX	1323151	1323580	+	0	NA	TTS (NM_001379165)	TTS (NM_001379165)	-13251	NM_001267713	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
86671	chr16	67485921	67486330	+	0	NA	Intergenic	AluY|SINE|Alu	-2578	NM_001138	181		NM_001138	ENSG00000159723	AGRP	AGRT|ART|ASIP2	agouti related neuropeptide	protein-coding
50665	chr12	48823801	48824000	+	0	NA	intron (NM_001206916, intron 3 of 12)	intron (NM_001206916, intron 3 of 12)	5404	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
170335	chr3	184405251	184405350	+	0	NA	intron (NR_161198, intron 1 of 2)	intron (NR_161198, intron 1 of 2)	3763	NR_161198	105374250		NR_161198	ENSG00000224153	LINC02054	-	long intergenic non-protein coding RNA 2054	ncRNA
101154	chr17	65058201	65058400	+	0	NA	Intergenic	Intergenic	-1560	NM_006572	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
5963	chr1	26904301	26904650	+	0	NA	Intergenic	AluJo|SINE|Alu	-4008	NM_022078	63906		NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
124586	chr2	767421	767900	+	0	NA	Intergenic	Intergenic	-90254	NM_152834	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
153977	chr22	30374221	30374480	+	0	NA	non-coding (NR_046312, exon 2 of 2)	non-coding (NR_046312, exon 2 of 2)	3555	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
22698	chr1	223989751	223990480	+	0	NA	intron (NR_132119, intron 1 of 10)	AluSp|SINE|Alu	2529	NR_132119	441124		NR_132119		GTF2IP20	-	general transcription factor IIi pseudogene 20	pseudo
122305	chr19	49113721	49115200	+	0	NA	promoter-TSS (NM_022165)	promoter-TSS (NM_022165)	90	NM_001308419	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
25756	chr10	10138601	10138880	+	0	NA	Intergenic	L1MEc|LINE|L1	80018	NR_120636	101928298		NR_120636	ENSG00000224788	LINC02670	-	long intergenic non-protein coding RNA 2670	ncRNA
238153	chrX	136777251	136778030	+	0	NA	intron (NM_004840, intron 2 of 21)	L1PB1|LINE|L1	3292	NM_004840	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
33596	chr10	119524251	119524550	+	0	NA	intron (NM_002925, intron 3 of 4)	intron (NM_002925, intron 3 of 4)	12133	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
156919	chr22	42284951	42285400	+	0	NA	Intergenic	Intergenic	-1248	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
37794	chr11	32581001	32581200	+	0	NA	Intergenic	LTR64|LTR|ERV1	-2731	NM_001307929	10480		NM_006360	ENSG00000149100	EIF3M	B5|GA17|PCID1|TANGO7|hfl-B5	eukaryotic translation initiation factor 3 subunit M	protein-coding
226888	chr9	78242401	78242800	+	0	NA	intron (NM_001349839, intron 4 of 16)	intron (NM_001349839, intron 4 of 16)	6525	NM_001330693	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
116999	chr19	18899651	18899750	+	0	NA	exon (NM_001330469, exon 11 of 11)	exon (NM_001330469, exon 11 of 11)	-2973	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
120003	chr19	41927451	41928600	+	0	NA	promoter-TSS (NR_135626)	promoter-TSS (NR_135626)	424	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
23362	chr1	228154351	228155430	+	0	NA	intron (NM_020435, intron 1 of 1)	L1MC3|LINE|L1	4960	NM_020435	57165		NM_020435	ENSG00000198835	GJC2	CX46.6|Cx47|GJA12|HLD2|LMPH1C|LMPHM3|PMLDAR|SPG44	gap junction protein gamma 2	protein-coding
50690	chr12	48868101	48868500	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-2430	NM_014470	27289		NM_014470	ENSG00000172602	RND1	ARHS|RHO6|RHOS	Rho family GTPase 1	protein-coding
113852	chr19	10642751	10643300	+	0	NA	intron (NM_001363611, intron 22 of 22)	intron (NM_001363611, intron 22 of 22)	10847	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
236478	chrX	71621001	71621530	+	0	NA	Intergenic	AluSp|SINE|Alu	-2754	NM_001504	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
137348	chr2	196148271	196148530	+	0	NA	intron (NM_004226, intron 3 of 7)	Charlie7|DNA|hAT-Charlie	23178	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
31177	chr10	91185471	91186030	+	0	NA	intron (NM_001257101, intron 1 of 9)	L1PA13|LINE|L1	22738	NM_001257101	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
175368	chr4	70618501	70618700	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-10144	NM_031889	10117		NM_031889	ENSG00000132464	ENAM	ADAI|AI1C|AIH2	enamelin	protein-coding
191504	chr6	11257651	11259550	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-25918	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
65518	chr14	51904021	51904730	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	14196	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
142249	chr20	3157171	3158030	+	0	NA	intron (NM_021826, intron 1 of 1)	intron (NM_021826, intron 1 of 1)	2265	NM_014948	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
103418	chr17	78231851	78232700	+	0	NA	intron (NM_001204212, intron 2 of 3)	CpG	965	NM_001204210	283999		NM_001145529	ENSG00000204278	TMEM235	ARGM1	transmembrane protein 235	protein-coding
13626	chr1	116412371	116412930	+	0	NA	intron (NR_024126, intron 1 of 2)	MER20|DNA|hAT-Charlie	5909	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
217759	chr8	31023301	31023500	+	0	NA	intron (NM_001323312, intron 2 of 2)	intron (NM_001323312, intron 2 of 2)	9401	NM_013357	29942		NM_013357	ENSG00000172733	PURG	PURG-A|PURG-B|PURGA|PURGB	purine rich element binding protein G	protein-coding
68146	chr14	75548001	75548400	+	0	NA	Intergenic	Intergenic	25731	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
160438	chr3	28342271	28343200	+	0	NA	intron (NM_001271650, intron 1 of 8)	(CA)n|Simple_repeat|Simple_repeat	-5986	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
10908	chr1	83488001	83488230	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	42061	NR_146478	101927542		NR_146478		LINC01712	-	long intergenic non-protein coding RNA 1712	ncRNA
53454	chr12	65556701	65556950	+	0	NA	non-coding (NR_135033, exon 2 of 3)	non-coding (NR_135033, exon 2 of 3)	486	NR_135033	105369187		NR_135033	ENSG00000250748	LOC105369187	-	uncharacterized LOC105369187	ncRNA
337	chr1	997571	998030	+	0	NA	Intergenic	Intergenic	2297	NM_021170	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
7409	chr1	32948351	32948850	+	0	NA	intron (NM_153341, intron 2 of 8)	intron (NM_153341, intron 2 of 8)	16209	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
216149	chr8	11557351	11557450	+	0	NA	intron (NM_001715, intron 9 of 12)	intron (NM_001715, intron 9 of 12)	-19135	NR_040035	83655		NM_054029	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
165572	chr3	101559601	101560030	+	0	NA	Intergenic	AluYk2|SINE|Alu	-2053	NM_017819	54931		NM_017819	ENSG00000174173	TRMT10C	COXPD30|HNYA|MRPP1|RG9MTD1	tRNA methyltransferase 10C, mitochondrial RNase P subunit	protein-coding
53232	chr12	62342701	62343100	+	0	NA	intron (NM_001351164, intron 6 of 21)	L1PA8|LINE|L1	82496	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
95752	chr17	38602421	38602900	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	3292	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
103685	chr17	78803051	78803950	+	0	NA	exon (NM_001385169, exon 16 of 21)	exon (NM_001385169, exon 16 of 21)	-21158	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
188570	chr5	157109901	157110180	+	0	NA	promoter-TSS (NM_032782)	promoter-TSS (NM_032782)	-996	NM_032782	84868		NM_032782	ENSG00000135077	HAVCR2	CD366|HAVcr-2|KIM-3|SPTCL|TIM3|TIMD-3|TIMD3|Tim-3	hepatitis A virus cellular receptor 2	protein-coding
186856	chr5	139471771	139471930	+	0	NA	intron (NM_001365197, intron 1 of 1)	intron (NM_001365197, intron 1 of 1)	846	NM_001365197	111064649		NM_001365197	ENSG00000283288	SMIM33	-	small integral membrane protein 33	protein-coding
93366	chr17	18240071	18240230	+	0	NA	intron (NM_004140, intron 16 of 22)	L2|LINE|L2	14515	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
97640	chr17	44193271	44193980	+	0	NA	3' UTR (NM_001382312, exon 13 of 13)	3' UTR (NM_001382312, exon 13 of 13)	5744	NM_001382315	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
15020	chr1	148311651	148311750	+	0	NA	Intergenic	L1MD1|LINE|L1	22854	NR_049810	100847044		NR_049810	ENSG00000283676	MIR5087	-	microRNA 5087	ncRNA
49693	chr12	30823131	30823500	+	0	NA	Intergenic	CpG	27634	NR_040245	100287314		NR_040245		LINC00941	lncIAPF|lncRNA-MUF	long intergenic non-protein coding RNA 941	ncRNA
65382	chr14	50736201	50736400	+	0	NA	intron (NM_020921, intron 27 of 30)	AluSx3|SINE|Alu	-67994	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
216092	chr8	11014901	11015780	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	19962	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
181024	chr5	35867251	35867550	+	0	NA	non-coding (NR_120485, exon 3 of 6)	non-coding (NR_120485, exon 3 of 6)	10509	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
161206	chr3	39155671	39156580	+	0	NA	Intergenic	(CTGC)n|Simple_repeat|Simple_repeat	-1484	NM_001320560	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
105344	chr17	82629201	82629400	+	0	NA	intron (NM_019613, intron 3 of 9)	intron (NM_019613, intron 3 of 9)	19144	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
56573	chr12	117152851	117153480	+	0	NA	intron (NM_015002, intron 11 of 11)	intron (NM_015002, intron 11 of 11)	37305	NM_015002	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
122667	chr19	49873171	49873700	+	0	NA	intron (NM_001278160, intron 1 of 4)	intron (NM_001278160, intron 1 of 4)	2814	NM_001278159	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
59294	chr13	24261171	24261980	+	0	NA	intron (NM_153023, intron 3 of 11)	L2c|LINE|L2	-7136	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
212559	chr7	128879401	128879600	+	0	NA	intron (NM_001366122, intron 37 of 39)	intron (NM_001366122, intron 37 of 39)	13170	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
73267	chr15	41834051	41834550	+	0	NA	intron (NM_005090, intron 1 of 24)	L2b|LINE|L2	-4513	NM_001114633	100137049		NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2 group IVB	protein-coding
63063	chr13	113152001	113152550	+	0	NA	Intergenic	Intergenic	-6373	NM_003891	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
13448	chr1	114481551	114481850	+	0	NA	intron (NM_033020, intron 1 of 18)	(TA)n|Simple_repeat|Simple_repeat	29503	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
35902	chr11	2413551	2414830	+	0	NA	exon (NM_014555, exon 12 of 24)	exon (NM_014555, exon 12 of 24)	8855	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
173159	chr4	6685801	6686700	+	0	NA	Intergenic	MIR3|SINE|MIR	4269	NR_147207	339988		NR_147207	ENSG00000246526	LINC02481	LINC002481	long intergenic non-protein coding RNA 2481	ncRNA
194114	chr6	31955251	31955550	+	0	NA	intron (NM_002904, intron 4 of 10)	intron (NM_002904, intron 4 of 10)	1540	NR_031601	100302242		NR_031601	ENSG00000284446	MIR1236	MIRN1236|hsa-mir-1236	microRNA 1236	ncRNA
38896	chr11	47410551	47411100	+	0	NA	intron (NM_001330245, intron 2 of 9)	intron (NM_001330245, intron 2 of 9)	2235	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
74142	chr15	55254571	55255250	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	15376	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
67974	chr14	74887851	74888550	+	0	NA	intron (NM_001244883, intron 3 of 6)	intron (NM_001244883, intron 3 of 6)	6284	NM_001244883	1743		NM_001933	ENSG00000119689	DLST	DLTS|KGD2|PGL7|PPGL7	dihydrolipoamide S-succinyltransferase	protein-coding
72571	chr15	34580721	34581280	+	0	NA	intron (NM_001023567, intron 1 of 23)	intron (NM_001023567, intron 1 of 23)	2570	NR_027410	440270		NM_001023567	ENSG00000215252	GOLGA8B	GOLGA5	golgin A8 family member B	protein-coding
134728	chr2	144566121	144566200	+	0	NA	intron (NR_110570, intron 1 of 2)	intron (NR_110570, intron 1 of 2)	-41716	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
197928	chr6	89682051	89682430	+	0	NA	intron (NM_014611, intron 73 of 101)	intron (NM_014611, intron 73 of 101)	-43493	NM_020466	57226		NM_020466	ENSG00000083099	LYRM2	DJ122O8.2	LYR motif containing 2	protein-coding
86869	chr16	67965901	67966100	+	0	NA	intron (NM_001145961, intron 1 of 23)	intron (NM_001145961, intron 1 of 23)	794	NM_001145964	6560		NM_005072	ENSG00000124067	SLC12A4	CTC-479C5.17|KCC1|hKCC1	solute carrier family 12 member 4	protein-coding
19782	chr1	182385921	182386380	+	0	NA	intron (NM_001033044, intron 4 of 6)	intron (NM_001033044, intron 4 of 6)	5254	NM_001033056	2752		NM_002065	ENSG00000135821	GLUL	DEE116|GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding
31379	chr10	94299501	94299800	+	0	NA	intron (NM_016341, intron 24 of 32)	intron (NM_016341, intron 24 of 32)	-12580	NR_033969	100128054		NR_033969	ENSG00000268894	PLCE1-AS1	-	PLCE1 antisense RNA 1	ncRNA
35371	chr11	1262321	1263480	+	0	NA	TTS (NM_002458)	TTS (NM_002458)	6295	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
95272	chr17	35501951	35502250	+	0	NA	intron (NM_001363830, intron 2 of 4)	Harlequin-int|LTR|ERV1	-14361	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
224010	chr9	2622171	2623150	+	0	NA	promoter-TSS (NR_015375)	promoter-TSS (NR_015375)	-287	NR_015375	401491		NR_015375	ENSG00000236404	VLDLR-AS1	linc-VLDLR|lincRNA-VLDLR	VLDLR antisense RNA 1	ncRNA
143945	chr20	32778301	32778830	+	0	NA	intron (NM_175849, intron 1 of 19)	intron (NM_175849, intron 1 of 19)	-1287	NM_175850	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
228950	chr9	113400151	113400250	+	0	NA	intron (NM_001003945, intron 1 of 11)	MIR3|SINE|MIR	920	NM_001317745	210		NM_000031	ENSG00000148218	ALAD	ALADH|PBGS	aminolevulinate dehydratase	protein-coding
54502	chr12	92093321	92094080	+	0	NA	intron (NR_132341, intron 1 of 4)	L1MC1|LINE|L1	48013	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
124978	chr2	8986671	8986830	+	0	NA	intron (NR_135603, intron 1 of 13)	MLT1A|LTR|ERVL-MaLR	16934	NM_001321266	129642		NM_138799	ENSG00000143797	MBOAT2	LPAAT|LPCAT|LPCAT4|LPEAT|LPLAT 2|LPLAT13|OACT2	membrane bound O-acyltransferase domain containing 2	protein-coding
12487	chr1	107943621	107944280	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-20493	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
111917	chr19	4709321	4710380	+	0	NA	intron (NR_158699, intron 4 of 22)	intron (NR_158699, intron 4 of 22)	10502	NM_001384611	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
151997	chr22	19180801	19181350	+	0	NA	intron (NM_001835, intron 29 of 31)	intron (NM_001835, intron 29 of 31)	-2212	NR_046298	6576		NM_005984	ENSG00000100075	SLC25A1	CIC|CMS23|CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
25083	chr10	3865701	3865900	+	0	NA	Intergenic	Intergenic	31850	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
220161	chr8	95060901	95061100	+	0	NA	intron (NR_148915, intron 9 of 9)	intron (NR_148915, intron 9 of 9)	-11914	NR_036105	100422964		NR_036105	ENSG00000283522	MIR3150A	MIR3150|mir-3150a	microRNA 3150a	ncRNA
228600	chr9	105114221	105114680	+	0	NA	Intergenic	Intergenic	-130155	NM_001330731	23446		NM_022109	ENSG00000070214	SLC44A1	CD92|CDW92|CHTL1|CONATOC|CTL1	solute carrier family 44 member 1	protein-coding
135570	chr2	165791951	165792450	+	0	NA	intron (NM_004482, intron 1 of 10)	intron (NM_004482, intron 1 of 10)	2047	NM_004482	2591		NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HFTC1|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
97011	chr17	42296971	42297130	+	0	NA	intron (NM_001288719, intron 4 of 17)	AluSz6|SINE|Alu	8994	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
128106	chr2	48112871	48113030	+	0	NA	Intergenic	Intergenic	-201349	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
24249	chr1	236281401	236283050	+	0	NA	promoter-TSS (NM_019891)	promoter-TSS (NM_019891)	-267	NM_019891	56605		NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding
214702	chr7	150993601	150993800	+	0	NA	promoter-TSS (NM_001160110)	promoter-TSS (NM_001160110)	-82	NM_001160109	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
25276	chr10	6140071	6141620	+	0	NA	Intergenic	Intergenic	-4076	NR_136554	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
230056	chr9	127417301	127417500	+	0	NA	Intergenic	Intergenic	-6974	NM_001286696	7633		NM_007135	ENSG00000196152	ZNF79	pT7	zinc finger protein 79	protein-coding
81745	chr16	11363221	11363630	+	0	NA	Intergenic	Intergenic	17966	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
19991	chr1	185155071	185155430	+	0	NA	intron (NM_001202423, intron 1 of 14)	intron (NM_001202423, intron 1 of 14)	1703	NM_030934	81627		NM_030934	ENSG00000121486	TRMT1L	C1orf25|MST070|MSTP070|TRM1L|bG120K12.3	tRNA methyltransferase 1 like	protein-coding
205023	chr7	6502251	6502350	+	0	NA	intron (NM_001145118, intron 18 of 21)	AluJr|SINE|Alu	-18148	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
199818	chr6	127547351	127547530	+	0	NA	Intergenic	Intergenic	-28416	NM_001012279	387104		NM_001012279	ENSG00000214338	MTCL3	C6orf174|SOGA3|dJ403A15.3	MTCL family member 3	protein-coding
204425	chr7	3114901	3115400	+	0	NA	Intergenic	Intergenic	43423	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
118987	chr19	38881751	38882330	+	0	NA	intron (NR_034146, intron 7 of 13)	AluJo|SINE|Alu	-3765	NM_001195833	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
87139	chr16	69133751	69134200	+	0	NA	intron (NM_032830, intron 2 of 16)	intron (NM_032830, intron 2 of 16)	1326	NM_032830	84916		NM_032830	ENSG00000141076	UTP4	CIRH1A|CIRHIN|NAIC|TEX292	UTP4 small subunit processome component	protein-coding
124301	chr19	57906571	57906930	+	0	NA	3' UTR (NM_001297734, exon 3 of 3)	3' UTR (NM_001297734, exon 3 of 3)	9842	NM_001297734	147687		NM_152475	ENSG00000173480	ZNF417	-	zinc finger protein 417	protein-coding
114354	chr19	12294401	12295600	+	0	NA	promoter-TSS (NM_001353553)	promoter-TSS (NM_001353553)	-101	NM_001353553	51710		NM_016264	ENSG00000197857	ZNF44	GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58	zinc finger protein 44	protein-coding
158123	chr22	50085371	50086230	+	0	NA	promoter-TSS (NM_001376484)	promoter-TSS (NM_001376484)	75	NM_001376475	23209		NM_015166	ENSG00000100427	MLC1	LVM|MLC|VL	modulator of VRAC current 1	protein-coding
57950	chr12	123742051	123742550	+	0	NA	intron (NM_012463, intron 9 of 19)	HAL1M8|LINE|L1	-20001	NM_001372106	196385		NM_207437	ENSG00000197653	DNAH10	SPGF56	dynein axonemal heavy chain 10	protein-coding
15365	chr1	150096971	150097130	+	0	NA	intron (NM_001279354, intron 13 of 14)	intron (NM_001279354, intron 13 of 14)	29274	NR_103998	11311		NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
7432	chr1	32972721	32973850	+	0	NA	Intergenic	CpG	-8476	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
28256	chr10	45656921	45657380	+	0	NA	intron (NM_174890, intron 2 of 9)	AluJo|SINE|Alu	15582	NM_001282905	93550		NM_174890	ENSG00000172671	ZFAND4	ANUBL1	zinc finger AN1-type containing 4	protein-coding
124034	chr19	55491851	55492700	+	0	NA	intron (NM_001144950, intron 6 of 13)	MIRb|SINE|MIR	3839	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
196433	chr6	43454201	43454900	+	0	NA	intron (NM_206539, intron 2 of 5)	intron (NM_206539, intron 2 of 5)	998	NM_023932	65989		NM_023932	ENSG00000171462	DLK2	DLK-2|EGFL9	delta like non-canonical Notch ligand 2	protein-coding
167537	chr3	129313381	129314060	+	0	NA	Intergenic	L2b|LINE|L2	-2551	NR_026991	339942		NM_001025468		H1-10-AS1	C3orf47|H1FX-AS1	H1-10 antisense RNA 1	ncRNA
216176	chr8	11782801	11783700	+	0	NA	exon (NM_001135747, exon 3 of 4)	exon (NM_001135747, exon 3 of 4)	-12323	NM_001287742	2222		NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SQSD|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding
95625	chr17	37645621	37646330	+	0	NA	Intergenic	L2-3_Crp|LINE|L2	-2529	NM_007010	11056		NM_007010	ENSG00000278053	DDX52	HUSSY19|ROK1	DExD-box helicase 52	protein-coding
16102	chr1	153627121	153628030	+	0	NA	promoter-TSS (NM_001024213)	promoter-TSS (NM_001024213)	66	NM_001024211	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
205329	chr7	12524721	12525030	+	0	NA	intron (NR_136263, intron 1 of 3)	(AATA)n|Simple_repeat|Simple_repeat	20478	NR_136263	102725191		NM_001386512	ENSG00000226690	C7orf78	-	chromosome 7 open reading frame 78	protein-coding
17045	chr1	156085021	156085680	+	0	NA	intron (NM_001282625, intron 2 of 12)	intron (NM_001282625, intron 2 of 12)	2777	NM_001282625	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
1195	chr1	2245071	2245630	+	0	NA	intron (NM_003036, intron 1 of 6)	L1MB3|LINE|L1	17031	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
45766	chr11	119254301	119254500	+	0	NA	intron (NM_005188, intron 2 of 15)	Tigger3a|DNA|TcMar-Tigger	48061	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
135327	chr2	160367801	160368600	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	39682	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
116670	chr19	18392801	18393000	+	0	NA	intron (NM_145256, intron 1 of 1)	AluJb|SINE|Alu	4722	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
175431	chr4	71051051	71051150	+	0	NA	Intergenic	Intergenic	57451	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
159055	chr3	11634101	11634580	+	0	NA	intron (NM_014667, intron 2 of 5)	L2|LINE|L2	9575	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
142276	chr20	3205801	3206130	+	0	NA	Intergenic	AluSz|SINE|Alu	-1283	NM_023935	65992		NM_023935	ENSG00000198171	DDRGK1	C20orf116|SEMDSH|UFBP1|dJ1187M17.3	DDRGK domain containing 1	protein-coding
42832	chr11	72969771	72970750	+	0	NA	intron (NM_014824, intron 8 of 19)	intron (NM_014824, intron 8 of 19)	155849	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
43352	chr11	76674871	76675030	+	0	NA	Intergenic	Intergenic	-4203	NM_001128922	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
160361	chr3	27841751	27841850	+	0	NA	intron (NR_146630, intron 3 of 4)	LTR16C|LTR|ERVL	-7664	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
20613	chr1	198938351	198938650	+	0	NA	Intergenic	Intergenic	-1071	NR_040073	100131234		NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA
71137	chr14	104979951	104980750	+	0	NA	Intergenic	Intergenic	-1976	NM_138420	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
15390	chr1	150186771	150187750	+	0	NA	Intergenic	FLAM_A|SINE|Alu	26532	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
135243	chr2	159616621	159616880	+	0	NA	promoter-TSS (NM_001329857)	promoter-TSS (NM_001329857)	-149	NM_001289975	29994		NM_013450	ENSG00000123636	BAZ2B	WALp4	bromodomain adjacent to zinc finger domain 2B	protein-coding
177263	chr4	109434851	109435150	+	0	NA	intron (NM_001318085, intron 1 of 23)	intron (NM_001318085, intron 1 of 23)	-1183	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
153808	chr22	29713451	29713550	+	0	NA	Intergenic	Intergenic	-6503	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
7765	chr1	36179271	36179430	+	0	NA	intron (NM_001286365, intron 12 of 15)	intron (NM_001286365, intron 12 of 15)	23190	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
72620	chr15	38084321	38084600	+	0	NA	Intergenic	Intergenic	-11470	NR_147199	107984773		NR_147199	ENSG00000236914	LINC01852	-	long intergenic non-protein coding RNA 1852	ncRNA
27874	chr10	41861601	41862080	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	506205	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
48480	chr12	9793451	9794100	+	0	NA	Intergenic	Intergenic	-6277	NR_159359	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
94787	chr17	31051071	31051430	+	0	NA	intron (NR_146737, intron 2 of 6)	AluJo|SINE|Alu	7859	NR_146737	646030		NR_146737		LOC646030	LRRC37	leucine rich repeat containing 37B pseudogene	pseudo
222533	chr8	140580551	140580850	+	0	NA	intron (NM_012154, intron 2 of 18)	intron (NM_012154, intron 2 of 18)	54933	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
98252	chr17	46175971	46176130	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	16732	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
210555	chr7	100340101	100340500	+	0	NA	intron (NR_036570, intron 3 of 16)	AluSz6|SINE|Alu	-3993	NR_003613	5379		NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
64357	chr14	24093801	24095000	+	0	NA	promoter-TSS (NM_004563).2	promoter-TSS (NM_004563).2	89	NM_001291556	5106		NM_004563	ENSG00000100889	PCK2	PEPCK|PEPCK-M|PEPCK2|mtPCK2	phosphoenolpyruvate carboxykinase 2, mitochondrial	protein-coding
38351	chr11	44578521	44578980	+	0	NA	intron (NM_002231, intron 1 of 9)	intron (NM_002231, intron 1 of 9)	13087	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
2500	chr1	9691601	9691800	+	0	NA	intron (NM_001350234, intron 2 of 23)	intron (NM_001350234, intron 2 of 23)	233	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
113780	chr19	10546571	10547100	+	0	NA	intron (NR_104025, intron 3 of 8)	intron (NR_104025, intron 3 of 8)	2931	NM_001281504	84971		NM_032885	ENSG00000130734	ATG4D	APG4-D|APG4D|AUTL4|HsAPG4D	autophagy related 4D cysteine peptidase	protein-coding
223757	chr8	144517221	144518950	+	0	NA	promoter-TSS (NM_004260)	promoter-TSS (NM_004260)	93	NM_014665	9684		NM_014665	ENSG00000160959	LRRC14	LRRC14A	leucine rich repeat containing 14	protein-coding
63609	chr14	20609901	20610900	+	0	NA	Intergenic	Intergenic	-19577	NM_001024822	493901		NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
98434	chr17	46822101	46822700	+	0	NA	Intergenic	Intergenic	-3708	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
99200	chr17	49515301	49515500	+	0	NA	TTS (NM_002507)	TTS (NM_002507)	4583	NR_106751	102465141		NR_106751	ENSG00000277478	MIR6165	hsa-mir-6165	microRNA 6165	ncRNA
150277	chr21	41823201	41823400	+	0	NA	intron (NR_104258, intron 14 of 23)	intron (NR_104258, intron 14 of 23)	40002	NR_104260	63977		NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
14173	chr1	121399371	121399730	+	0	NA	Intergenic	Intergenic	-1645	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
5292	chr1	25140301	25140700	+	0	NA	Intergenic	Intergenic	92002	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
194636	chr6	33581301	33582280	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1514	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
67627	chr14	72962901	72963100	+	0	NA	TTS (NM_001352448)	TTS (NM_001352448)	23956	NM_178441	53349		NM_021260	ENSG00000165861	ZFYVE1	DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1	zinc finger FYVE-type containing 1	protein-coding
119574	chr19	40667251	40667350	+	0	NA	3' UTR (NM_001289979, exon 9 of 9)	3' UTR (NM_001289979, exon 9 of 9)	22864	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
171100	chr3	195502951	195503050	+	0	NA	Intergenic	Intergenic	40325	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
39970	chr11	62590751	62592480	+	0	NA	promoter-TSS (NM_001367906)	promoter-TSS (NM_001367906)	-92	NM_022830	64852		NM_022830	ENSG00000149016	TUT1	PAPD2|RBM21|STARPAP|TENT1|TUTase|URLC6	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding
188821	chr5	159051171	159051530	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	46606	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
224237	chr9	5840001	5840830	+	0	NA	Intergenic	Intergenic	-7298	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
130859	chr2	87397921	87398880	+	0	NA	Intergenic	(CCAAGCCAG)n|Simple_repeat|Simple_repeat	-57027	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
200857	chr6	138520371	138520730	+	0	NA	intron (NM_020464, intron 1 of 6)	AluSx|SINE|Alu	-21056	NM_001144060	57224		NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
81827	chr16	11569121	11570050	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	16788	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
99895	chr17	56831801	56832000	+	0	NA	intron (NM_001085430, intron 2 of 7)	MER67B|LTR|ERV1	2020	NM_001085430	339210		NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
99401	chr17	49998101	49998880	+	0	NA	Intergenic	Intergenic	-3266	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
151432	chr21	46131451	46131750	+	0	NA	intron (NM_001849, intron 27 of 27)	intron (NM_001849, intron 27 of 27)	-19775	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
57626	chr12	122505151	122505530	+	0	NA	non-coding (NR_036435, exon 11 of 11)	non-coding (NR_036435, exon 11 of 11)	-4408	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
3968	chr1	18686521	18686780	+	0	NA	intron (NM_001135254, intron 4 of 8)	intron (NM_001135254, intron 4 of 8)	55804	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
94464	chr17	29262271	29262430	+	0	NA	3' UTR (NM_020772, exon 4 of 4)	3' UTR (NM_020772, exon 4 of 4)	15491	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
121364	chr19	46850321	46851750	+	0	NA	promoter-TSS (NM_001301081)	promoter-TSS (NM_001301081)	-189	NM_001301078	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
165888	chr3	106207451	106207550	+	0	NA	Intergenic	Intergenic	-338099	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
17454	chr1	156694501	156694700	+	0	NA	Intergenic	Intergenic	10983	NM_001878	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
16598	chr1	155051901	155053500	+	0	NA	exon (NM_207197, exon 2 of 23)	exon (NM_207197, exon 2 of 23)	1384	NM_001261464	8751		NM_003815	ENSG00000143537	ADAM15	MDC15	ADAM metallopeptidase domain 15	protein-coding
168803	chr3	152200901	152201950	+	0	NA	intron (NR_136178, intron 1 of 2)	intron (NR_136178, intron 1 of 2)	4004	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
115324	chr19	15109951	15110250	+	0	NA	exon (NM_001300910, exon 3 of 8)	exon (NM_001300910, exon 3 of 8)	2699	NM_001300910	85360		NM_033025	ENSG00000105137	SYDE1	7h3|SYD1	synapse defective Rho GTPase homolog 1	protein-coding
203563	chr7	898351	899230	+	0	NA	3' UTR (NM_001284311, exon 9 of 9)	3' UTR (NM_001284311, exon 9 of 9)	22099	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
17232	chr1	156292251	156292950	+	0	NA	TTS (NM_001256605)	TTS (NM_001256605)	-1102	NM_001323617	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
48281	chr12	8860471	8860800	+	0	NA	intron (NM_144670, intron 26 of 35)	intron (NM_144670, intron 26 of 35)	15631	NM_001282424	144568		NM_144670	ENSG00000166535	A2ML1	CPAMD9|OMS|p170	alpha-2-macroglobulin like 1	protein-coding
177700	chr4	121944001	121944250	+	0	NA	intron (NM_001366479, intron 1 of 10)	intron (NM_001366479, intron 1 of 10)	7935	NM_001366479	7222		NM_003305	ENSG00000138741	TRPC3	SCA41|TRP3	transient receptor potential cation channel subfamily C member 3	protein-coding
99860	chr17	55845371	55845530	+	0	NA	Intergenic	CpG	94345	NM_001102402	58488		NM_021213	ENSG00000141179	PCTP	PC-TP|STARD2	phosphatidylcholine transfer protein	protein-coding
192472	chr6	24931451	24932850	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	3810	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
163128	chr3	50132571	50132730	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-22408	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
59743	chr13	29936911	29937500	+	0	NA	non-coding (NR_033889, exon 2 of 5)	non-coding (NR_033889, exon 2 of 5)	674	NR_033889	440131		NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
54356	chr12	89699821	89700280	+	0	NA	intron (NM_001366520, intron 1 of 21)	AluJb|SINE|Alu	8788	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
64219	chr14	23066221	23066880	+	0	NA	intron (NM_014977, intron 9 of 18)	intron (NM_014977, intron 9 of 18)	5019	NM_001164817	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
226465	chr9	71737501	71737700	+	0	NA	intron (NM_013390, intron 5 of 23)	AluJr|SINE|Alu	30913	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
231930	chr9	133114821	133115280	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	6190	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
159423	chr3	13554771	13555130	+	0	NA	intron (NM_001004019, intron 1 of 17)	AluSx|SINE|Alu	5825	NM_001004019	2199		NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
32611	chr10	103606671	103606830	+	0	NA	intron (NM_014631, intron 12 of 13)	SVA_D|Retroposon|SVA	71465	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
127860	chr2	45652401	45652930	+	0	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	990	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
5614	chr1	26138671	26139400	+	0	NA	Intergenic	Intergenic	-20044	NM_024869	79927		NM_024869	ENSG00000197245	FAM110D	GRRP1	family with sequence similarity 110 member D	protein-coding
14713	chr1	145954821	145955280	+	0	NA	intron (NM_153713, intron 1 of 5)	L2c|LINE|L2	2967	NM_153713	128077		NM_153713	ENSG00000271601	LIX1L	-	limb and CNS expressed 1 like	protein-coding
134357	chr2	136140971	136141130	+	0	NA	Intergenic	Intergenic	-22901	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
204359	chr7	2907671	2907830	+	0	NA	intron (NM_032415, intron 24 of 24)	AluSx1|SINE|Alu	-63442	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
93381	chr17	18254521	18255130	+	0	NA	exon (NM_002018, exon 5 of 30)	exon (NM_002018, exon 5 of 30)	3913	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
101382	chr17	67338421	67338680	+	0	NA	3' UTR (NM_001316341, exon 13 of 13)	3' UTR (NM_001316341, exon 13 of 13)	28027	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
170014	chr3	180919251	180919350	+	0	NA	intron (NM_001013439, intron 2 of 17)	AluSz|SINE|Alu	6629	NM_001363882	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
33282	chr10	114542771	114543250	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	-16097	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
139577	chr2	224948571	224949330	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	-1901	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
209579	chr7	77442521	77442780	+	0	NA	Intergenic	L1ME2z|LINE|L1	-26301	NM_001350896	54103		NM_017439	ENSG00000186088	GSAP	PION	gamma-secretase activating protein	protein-coding
181879	chr5	54514451	54514780	+	0	NA	Intergenic	Intergenic	-3144	NM_001145427	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
7650	chr1	35594351	35594650	+	0	NA	exon (NM_178548, exon 7 of 7)	exon (NM_178548, exon 7 of 7)	21186	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
63751	chr14	21235401	21236330	+	0	NA	intron (NM_001077443, intron 1 of 7)	intron (NM_001077443, intron 1 of 7)	-28965	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
72956	chr15	40467221	40467830	+	0	NA	non-coding (NR_125372, exon 5 of 5)	non-coding (NR_125372, exon 5 of 5)	-3459	NM_130468	113189		NM_130468	ENSG00000169105	CHST14	ATCS|D4ST1|EDSMC1|HNK1ST	carbohydrate sulfotransferase 14	protein-coding
88584	chr16	85573101	85573300	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-38209	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
233701	chrX	1231851	1232550	+	0	NA	Intergenic	Intergenic	-19477	NM_001012288	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
162785	chr3	49093021	49095030	+	0	NA	promoter-TSS (NM_001320583)	promoter-TSS (NM_001320583)	46	NM_198880	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
215043	chr7	152511401	152511600	+	0	NA	Intergenic	AluSx4|SINE|Alu	47376	NR_027387	100128822		NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
40740	chr11	64828921	64829180	+	0	NA	intron (NM_017525, intron 30 of 36)	AluSz|SINE|Alu	15603	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
214445	chr7	150048901	150049400	+	0	NA	intron (NM_001351028, intron 6 of 9)	CpG-26522	-1435	NR_147022	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
226572	chr9	72525951	72526250	+	0	NA	intron (NM_138691, intron 1 of 23)	intron (NM_138691, intron 1 of 23)	4492	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
95124	chr17	35006371	35006750	+	0	NA	non-coding (NR_037713, exon 7 of 7)	non-coding (NR_037713, exon 7 of 7)	26048	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
145102	chr20	38733001	38733400	+	0	NA	Intergenic	Intergenic	8714	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
176196	chr4	83503921	83504780	+	0	NA	Intergenic	Intergenic	-19250	NM_001345962	84142		NM_139076	ENSG00000163322	ABRAXAS1	ABRA1|CCDC98|FAM175A	abraxas 1, BRCA1 A complex subunit	protein-coding
108312	chr18	63410771	63410930	+	0	NA	intron (NM_004869, intron 2 of 10)	intron (NM_004869, intron 2 of 10)	11626	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
122311	chr19	49124571	49124930	+	0	NA	intron (NR_103842, intron 1 of 28)	intron (NR_103842, intron 1 of 28)	5206	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
36628	chr11	7520071	7520430	+	0	NA	intron (NM_001351855, intron 1 of 24)	MER48|LTR|ERV1	6251	NM_001351856	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
39069	chr11	47979421	47979680	+	0	NA	Intergenic	L2b|LINE|L2	-1009	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
192565	chr6	25489771	25490380	+	0	NA	intron (NM_001173977, intron 13 of 36)	intron (NM_001173977, intron 13 of 36)	-162140	NM_006998	10590		NM_006998	ENSG00000079689	SCGN	CALBL|DJ501N12.8|SECRET|SEGN|setagin	secretagogin, EF-hand calcium binding protein	protein-coding
145474	chr20	43761321	43761600	+	0	NA	Intergenic	Intergenic	-34458	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
174889	chr4	48832821	48833080	+	0	NA	intron (NM_017830, intron 2 of 8)	intron (NM_017830, intron 2 of 8)	1644	NM_001168254	54940		NM_017830	ENSG00000109180	OCIAD1	ASRIJ|OCIA|TPA018	OCIA domain containing 1	protein-coding
56322	chr12	112791321	112791630	+	0	NA	promoter-TSS (NM_001347954)	promoter-TSS (NM_001347954)	-63	NM_001347953	22895		NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding
12764	chr1	109634401	109635200	+	0	NA	Intergenic	Intergenic	10812	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
139320	chr2	219543151	219546400	+	0	NA	promoter-TSS (NM_024536)	promoter-TSS (NM_024536)	747	NM_001005209	130612		NM_001005209	ENSG00000188760	TMEM198	TMEM198A	transmembrane protein 198	protein-coding
39603	chr11	61335151	61335600	+	0	NA	intron (NM_001351976, intron 3 of 18)	intron (NM_001351976, intron 3 of 18)	2147	NM_001351979	26007		NM_015533	ENSG00000149476	TKFC	DAK|NET45|TKFCD	triokinase and FMN cyclase	protein-coding
132961	chr2	111469021	111469280	+	0	NA	intron (NR_024373, intron 1 of 1)	A-rich|Low_complexity|Low_complexity	26011	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
85098	chr16	33339751	33339890	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-9479	NR_158162	105369266		NR_158162		LOC105369266	-	uncharacterized LOC105369266	ncRNA
166290	chr3	112524601	112524800	+	0	NA	Intergenic	Intergenic	-25228	NM_001085357	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
6147	chr1	27390021	27390850	+	0	NA	Intergenic	Intergenic	-2187	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
190680	chr5	181384801	181385200	+	0	NA	Intergenic	L1PA8|LINE|L1	17713	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
212712	chr7	129788401	129789430	+	0	NA	Intergenic	Intergenic	-13901	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
65638	chr14	52313021	52313280	+	0	NA	Intergenic	Intergenic	-1162	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
228264	chr9	98044701	98046030	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-11367	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
160789	chr3	32957201	32957800	+	0	NA	Intergenic	AluSz|SINE|Alu	5856	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
176168	chr4	83272871	83273230	+	0	NA	intron (NM_015697, intron 3 of 6)	intron (NM_015697, intron 3 of 6)	11748	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
110256	chr19	1793421	1793750	+	0	NA	intron (NR_047593, intron 18 of 28)	intron (NR_047593, intron 18 of 28)	18691	NM_001178002	148229		NM_138813	ENSG00000130270	ATP8B3	ATPIK	ATPase phospholipid transporting 8B3	protein-coding
118502	chr19	35949171	35949550	+	0	NA	intron (NR_136525, intron 1 of 4)	intron (NR_136525, intron 1 of 4)	2245	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
102554	chr17	75845101	75845630	+	0	NA	promoter-TSS (NM_199242)	promoter-TSS (NM_199242)	-961	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
222000	chr8	130013371	130014080	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	2835	NM_001353262	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
135758	chr2	169583951	169585400	+	0	NA	intron (NM_004792, intron 1 of 13)	CpG	324	NM_004792	9360		NM_004792	ENSG00000138398	PPIG	CARS-Cyp|CYP|SCAF10|SRCyp	peptidylprolyl isomerase G	protein-coding
170387	chr3	184803071	184803600	+	0	NA	Intergenic	MIR3|SINE|MIR	-8808	NM_001349297	23355		NM_015303	ENSG00000156931	VPS8	KIAA0804	VPS8 subunit of CORVET complex	protein-coding
190569	chr5	180824371	180824530	+	0	NA	Intergenic	L1MC5a|LINE|L1	-6507	NR_027183	729678		NR_027183	ENSG00000245060	LINC00847	-	long intergenic non-protein coding RNA 847	ncRNA
215349	chr7	157376721	157377950	+	0	NA	intron (NM_001363676, intron 5 of 6)	MER4E1|LTR|ERV1	40331	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
105271	chr17	82452651	82452750	+	0	NA	Intergenic	MER4D1|LTR|ERV1	-1948	NR_036517	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
92413	chr17	8381221	8381880	+	0	NA	intron (NM_001315531, intron 2 of 3)	AluJo|SINE|Alu	1643	NM_001315530	6154		NM_000987	ENSG00000161970	RPL26	DBA11|L26|uL24	ribosomal protein L26	protein-coding
103637	chr17	78753721	78754430	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-17173	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
138984	chr2	218290651	218291280	+	0	NA	promoter-TSS (NM_001321430)	promoter-TSS (NM_001321430)	-963	NM_001321432	64114		NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
128067	chr2	47860901	47861100	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluSp|SINE|Alu	27719	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
233639	chrX	724521	725850	+	0	NA	Intergenic	Intergenic	100841	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
58349	chr12	131598651	131599330	+	0	NA	Intergenic	Intergenic	49131	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
5951	chr1	26893201	26893680	+	0	NA	exon (NM_022078, exon 4 of 7)	exon (NM_022078, exon 4 of 7)	-3157	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
77829	chr15	88637301	88637500	+	0	NA	intron (NM_001303234, intron 2 of 4)	intron (NM_001303234, intron 2 of 4)	-1616	NM_001303237	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
132855	chr2	110873101	110873500	+	0	NA	intron (NM_001371254, intron 10 of 18)	intron (NM_001371254, intron 10 of 18)	140727	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
192104	chr6	16710621	16710980	+	0	NA	intron (NM_000332, intron 3 of 8)	AluJo|SINE|Alu	49384	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
201983	chr6	152296501	152296700	+	0	NA	intron (NM_033071, intron 92 of 145)	intron (NM_033071, intron 92 of 145)	-83930	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
54891	chr12	95857301	95857500	+	0	NA	TTS (NR_135015)	TTS (NR_135015)	1439	NR_135015	105369921		NR_135014	ENSG00000258343	SNRPF-DT	-	SNRPF divergent transcript	ncRNA
76583	chr15	75346001	75346200	+	0	NA	promoter-TSS (NM_001352519)	promoter-TSS (NM_001352519)	-890	NM_001352519	79661		NM_024608	ENSG00000140398	NEIL1	FPG1|NEI1|hFPG1	nei like DNA glycosylase 1	protein-coding
54405	chr12	90028421	90028880	+	0	NA	Intergenic	Intergenic	80957	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
1454	chr1	2658371	2658800	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-25569	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
47704	chr12	6443101	6443900	+	0	NA	intron (NR_015382, intron 5 of 5)	intron (NR_015382, intron 5 of 5)	-1455	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
43506	chr11	78646551	78647050	+	0	NA	Intergenic	Intergenic	-71936	NM_001243251	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
129406	chr2	68911871	68912030	+	0	NA	Intergenic	L2b|LINE|L2	-40553	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
73807	chr15	48809121	48809380	+	0	NA	intron (NM_001194998, intron 1 of 26)	intron (NM_001194998, intron 1 of 26)	1819	NM_001194998	22995		NM_014985	ENSG00000103995	CEP152	MCPH4|MCPH9|SCKL5	centrosomal protein 152	protein-coding
160617	chr3	31507401	31507600	+	0	NA	Intergenic	LTR33|LTR|ERVL	-25425	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
186420	chr5	135759551	135759850	+	0	NA	intron (NM_001349345, intron 3 of 9)	L1ME1|LINE|L1	43375	NR_049867	100847082		NR_049867	ENSG00000265924	MIR5692C1	-	microRNA 5692c-1	ncRNA
201212	chr6	143539171	143539330	+	0	NA	Intergenic	Intergenic	22801	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
208913	chr7	74057271	74057430	+	0	NA	intron (NM_001278918, intron 18 of 27)	intron (NM_001278918, intron 18 of 27)	-26454	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
204053	chr7	1961501	1962260	+	0	NA	intron (NM_001304524, intron 13 of 16)	THE1A|LTR|ERVL-MaLR	-21309	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
60643	chr13	42396471	42397200	+	0	NA	Intergenic	Intergenic	-28057	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
205455	chr7	17152801	17153000	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-145752	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
131914	chr2	98827521	98827780	+	0	NA	intron (NM_207362, intron 5 of 9)	intron (NM_207362, intron 5 of 9)	-55752	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
223328	chr8	143823501	143823700	+	0	NA	intron (NM_001271099, intron 1 of 10)	intron (NM_001271099, intron 1 of 10)	5441	NM_001362896	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
238528	chrX	153692721	153692980	+	0	NA	intron (NM_005629, intron 4 of 12)	intron (NM_005629, intron 4 of 12)	3339	NM_001142806	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
222281	chr8	133449221	133450580	+	0	NA	Intergenic	MIRb|SINE|MIR	121987	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
208282	chr7	65979001	65979700	+	0	NA	intron (NM_001293105, intron 2 of 9)	intron (NM_001293105, intron 2 of 9)	2863	NM_001284290	2990		NM_000181	ENSG00000169919	GUSB	BG|MPS7	glucuronidase beta	protein-coding
52581	chr12	56175921	56176380	+	0	NA	intron (NM_003075, intron 15 of 27)	AluSq2|SINE|Alu	13333	NM_001130420	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
86209	chr16	58023501	58024050	+	0	NA	Intergenic	Intergenic	-1979	NM_002428	4324		NM_002428	ENSG00000102996	MMP15	MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15	protein-coding
54198	chr12	79850451	79850880	+	0	NA	intron (NM_001143885, intron 3 of 25)	MSTA|LTR|ERVL-MaLR	63246	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
199696	chr6	124432121	124432200	+	0	NA	intron (NM_153355, intron 3 of 5)	intron (NM_153355, intron 3 of 5)	149155	NM_001300740	154215		NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	sodium/potassium transporting ATPase interacting 2	protein-coding
161333	chr3	39867851	39867950	+	0	NA	intron (NM_015460, intron 1 of 16)	L1MA9|LINE|L1	58240	NM_001284425	25924		NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
229297	chr9	120844471	120844850	+	0	NA	non-coding (NR_152406, exon 1 of 4)	non-coding (NR_152406, exon 1 of 4)	1585	NR_024408	253039		NR_024408	ENSG00000293514	CUTALP	PSMD5-AS1	cutA divalent cation tolerance like, pseudogene	pseudo
107903	chr18	57084471	57084830	+	0	NA	Intergenic	Intergenic	-12531	NR_152602	100885779		NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR|lincRNA-ST8SIA3	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
198219	chr6	98831821	98832580	+	0	NA	promoter-TSS (NR_148381)	promoter-TSS (NR_148381)	-500	NR_148381	105447646		NR_148381		PNKY	-	long intergenic non-protein coding RNA PNKY	ncRNA
239453	chrY	56715821	56716080	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-238305	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
220514	chr8	100674071	100674430	+	0	NA	Intergenic	AluSg4|SINE|Alu	-24585	NM_152628	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
206994	chr7	38340301	38340800	+	0	NA	Intergenic	Intergenic	-1027	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
21606	chr1	206561821	206562080	+	0	NA	intron (NM_182665, intron 1 of 4)	AluSq2|SINE|Alu	4786	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
41789	chr11	66856021	66857350	+	0	NA	promoter-TSS (NM_024036)	promoter-TSS (NM_024036)	-379	NM_024036	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
31717	chr10	97678621	97679250	+	0	NA	intron (NM_021732, intron 2 of 2)	(GT)n|Simple_repeat|Simple_repeat	8306	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
45781	chr11	119295451	119295550	+	0	NA	intron (NM_005188, intron 12 of 15)	AluJb|SINE|Alu	17512	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
178734	chr4	153081101	153081700	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-70763	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
211159	chr7	102575901	102576500	+	0	NA	Intergenic	AluJo|SINE|Alu	-3579	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
136292	chr2	174753101	174754000	+	0	NA	exon (NM_000079, exon 6 of 9)	exon (NM_000079, exon 6 of 9)	10922	NM_001039523	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
191289	chr6	6592071	6592430	+	0	NA	intron (NM_004271, intron 1 of 4)	intron (NM_004271, intron 1 of 4)	3530	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
107653	chr18	48990451	48991400	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-32778	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
181846	chr5	53039651	53040400	+	0	NA	intron (NR_073104, intron 2 of 28)	L2c|LINE|L2	50673	NM_002203	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
176072	chr4	82797571	82797930	+	0	NA	intron (NM_024906, intron 1 of 3)	intron (NM_024906, intron 1 of 3)	1046	NM_001037582	79966		NM_024906	ENSG00000145284	SCD5	ACOD4|DFNA79|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
58147	chr12	124920021	124920530	+	0	NA	Intergenic	Intergenic	4728	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
169322	chr3	159763901	159764450	+	0	NA	intron (NM_001197108, intron 1 of 6)	CpG	4437	NR_121669	100874433		NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA
209546	chr7	77223551	77223850	+	0	NA	intron (NM_020879, intron 2 of 18)	intron (NM_020879, intron 2 of 18)	-23881	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
200678	chr6	137224771	137225200	+	0	NA	Intergenic	Intergenic	-5600	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
188758	chr5	157578251	157578550	+	0	NA	Intergenic	MLT1B-int|LTR|ERVL-MaLR	-2625	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
22404	chr1	219959621	219959880	+	0	NA	promoter-TSS (NM_001376929)	promoter-TSS (NM_001376929)	-652	NM_001376929	55532		NM_018713	ENSG00000196660	SLC30A10	HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10	solute carrier family 30 member 10	protein-coding
217512	chr8	29176901	29177300	+	0	NA	intron (NM_015254, intron 9 of 39)	MER20|DNA|hAT-Charlie	85970	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
124315	chr19	58092471	58092830	+	0	NA	intron (NM_001145542, intron 1 of 6)	intron (NM_001145542, intron 1 of 6)	5581	NM_001145543	65982		NM_023926	ENSG00000121413	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
185984	chr5	133398771	133398930	+	0	NA	intron (NM_015082, intron 4 of 15)	intron (NM_015082, intron 4 of 15)	28856	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
178633	chr4	152246601	152247030	+	0	NA	Intergenic	Intergenic	-90859	NR_104273	102191832		NR_104273	ENSG00000270751	FBXW7-AS1	DEAR|DEspR	FBXW7 antisense RNA 1	ncRNA
164781	chr3	69204001	69204880	+	0	NA	intron (NM_015123, intron 11 of 22)	intron (NM_015123, intron 11 of 22)	-81845	NM_001304418	56203		NM_198271	ENSG00000163380	LMOD3	NEM10	leiomodin 3	protein-coding
197839	chr6	88167221	88167480	+	0	NA	promoter-TSS (NM_001370547)	promoter-TSS (NM_001370547)	-1	NM_001370547	1268		NM_016083	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1	protein-coding
212441	chr7	128399851	128400280	+	0	NA	intron (NM_183243, intron 7 of 14)	intron (NM_183243, intron 7 of 14)	5930	NM_001142575	3614		NM_000883	ENSG00000106348	IMPDH1	IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608	inosine monophosphate dehydrogenase 1	protein-coding
13950	chr1	120350471	120351230	+	0	NA	Intergenic	Intergenic	-64177	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
45823	chr11	119362071	119362330	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	2008	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
119225	chr19	39462121	39462380	+	0	NA	intron (NM_001111020, intron 10 of 29)	L1MB7|LINE|L1	-5972	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
683	chr1	1384771	1384930	+	0	NA	TTS (NM_001350499)	TTS (NM_001350499)	-9643	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
194561	chr6	33393571	33394200	+	0	NA	intron (NM_002263, intron 1 of 10).3	AluSc8|SINE|Alu	2062	NM_002263	3833		NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
221716	chr8	127209601	127210450	+	0	NA	intron (NR_108049, intron 1 of 1)	intron (NR_108049, intron 1 of 1)	9243	NR_108049	100507056		NR_108049		CCAT1	CARLO5|CARLo-5|onco-lncRNA-40	colon cancer associated transcript 1	ncRNA
45992	chr11	121510451	121510750	+	0	NA	intron (NM_003105, intron 6 of 47)	MLT1J|LTR|ERVL-MaLR	-28811	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
118935	chr19	38770801	38771250	+	0	NA	TTS (NM_002307)	TTS (NM_002307)	2492	NM_002307	3963		NM_002307	ENSG00000205076	LGALS7	GAL7|LGALS7A	galectin 7	protein-coding
50164	chr12	45969851	45970030	+	0	NA	intron (NM_004719, intron 1 of 14)	AluSg7|SINE|Alu	20634	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
48806	chr12	12007701	12008700	+	0	NA	Intergenic	Intergenic	-41661	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
91602	chr17	5288351	5288880	+	0	NA	intron (NM_001291581, intron 1 of 16)	AluSx|SINE|Alu	6331	NM_001083585	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
78507	chr15	92932901	92934100	+	0	NA	intron (NM_001042572, intron 5 of 12)	intron (NM_001042572, intron 5 of 12)	29101	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
114182	chr19	11395321	11395780	+	0	NA	intron (NM_001161616, intron 18 of 18)	intron (NM_001161616, intron 18 of 18)	-11236	NR_033663	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
99529	chr17	50351721	50352330	+	0	NA	intron (NM_022167, intron 1 of 10)	L2a|LINE|L2	5899	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
53045	chr12	57618701	57618900	+	0	NA	promoter-TSS (NR_166678)	promoter-TSS (NR_166678)	-727	NR_166678	65012		NM_133489	ENSG00000293429	SLC26A10P	SLC26A10	solute carrier family 26 member 10, pseudogene	pseudo
106144	chr18	9612251	9612930	+	0	NA	intron (NR_168404, intron 2 of 20)	intron (NR_168404, intron 2 of 20)	1969	NM_001042388	9989		NM_005134	ENSG00000154845	PPP4R1	MEG1|PP4(Rmeg)|PP4R1	protein phosphatase 4 regulatory subunit 1	protein-coding
82683	chr16	19886151	19886900	+	0	NA	promoter-TSS (NM_001304771)	promoter-TSS (NM_001304771)	-891	NM_001304771	51704		NM_016235	ENSG00000167191	GPRC5B	MLC3|RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding
170881	chr3	192964971	192965130	+	0	NA	Intergenic	L1PA3|LINE|L1	-47194	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
66310	chr14	61408801	61409980	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	87947	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
129094	chr2	65119751	65119850	+	0	NA	intron (NM_004161, intron 1 of 5)	FLAM_C|SINE|Alu	10306	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
85964	chr16	57284051	57285100	+	0	NA	promoter-TSS (NM_015993)	promoter-TSS (NM_015993)	97	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
107754	chr18	50356921	50357570	+	0	NA	Intergenic	AluJb|SINE|Alu	-17801	NM_145060	220134		NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
199940	chr6	127907921	127908750	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-7254	NM_001164685	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
228786	chr9	111632871	111633030	+	0	NA	intron (NM_004125, intron 1 of 2)	intron (NM_004125, intron 1 of 2)	1598	NR_037148	548645		NM_001015882	ENSG00000059769	DNAJC25	bA16L21.2.1	DnaJ heat shock protein family (Hsp40) member C25	protein-coding
44236	chr11	96464771	96464930	+	0	NA	intron (NR_047481, intron 1 of 4)	intron (NR_047481, intron 1 of 4)	42027	NR_047481	100874053		NR_047481		JRKL-AS1	-	JRKL antisense RNA 1	ncRNA
90105	chr16	90053151	90053450	+	0	NA	Intergenic	MER72|LTR|ERV1	-5517	NR_027336	100130015		NR_027335	ENSG00000290738	URAHP	URAH	urate (hydroxyiso-) hydrolase, pseudogene	pseudo
77560	chr15	84821571	84821730	+	0	NA	intron (NM_020778, intron 1 of 13)	intron (NM_020778, intron 1 of 13)	4294	NM_020778	57538		NM_020778	ENSG00000136383	ALPK3	CMH27|MAK|MIDORI	alpha kinase 3	protein-coding
63271	chr13	113958671	113958830	+	0	NA	intron (NM_001365455, intron 6 of 6)	intron (NM_001365455, intron 6 of 6)	15326	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
207302	chr7	44018621	44019680	+	0	NA	promoter-TSS (NR_003655)	promoter-TSS (NR_003655)	44	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
150844	chr21	44058601	44059000	+	0	NA	intron (NM_003274, intron 5 of 22)	L2a|LINE|L2	-15524	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
141729	chr2	241865621	241866980	+	0	NA	Intergenic	CpG	-3429	NM_173821	285093		NM_173821	ENSG00000188011	RTP5	C2orf85|CXXC11|Z3CXXC5	receptor transporter protein 5 (putative)	protein-coding
28116	chr10	43404541	43405550	+	0	NA	intron (NM_001098204, intron 1 of 3)	intron (NM_001098204, intron 1 of 3)	2806	NM_001098206	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
37243	chr11	14584471	14584630	+	0	NA	intron (NM_148976, intron 2 of 10)	intron (NM_148976, intron 2 of 10)	59084	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
25548	chr10	7471721	7472230	+	0	NA	Intergenic	Intergenic	-60489	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
36446	chr11	5683151	5684200	+	0	NA	intron (NM_033093, intron 1 of 7)	LTR12C|LTR|ERV1	1399	NM_033034	85363		NM_033034	ENSG00000132256	TRIM5	RNF88|TRIM5alpha	tripartite motif containing 5	protein-coding
125419	chr2	11758701	11758900	+	0	NA	intron (NM_001349204, intron 2 of 21)	intron (NM_001349204, intron 2 of 21)	-8644	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA
32040	chr10	101035321	101035730	+	0	NA	non-coding (NR_157572, exon 4 of 12)	non-coding (NR_157572, exon 4 of 12)	4286	NM_030971	81855		NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3|SLC56A3	sideroflexin 3	protein-coding
183899	chr5	87378221	87378480	+	0	NA	intron (NM_022650, intron 17 of 24)	intron (NM_022650, intron 17 of 24)	34554	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
77595	chr15	85256201	85256750	+	0	NA	Intergenic	Intergenic	16124	NM_001310153	100133220		NM_001310153	ENSG00000188388	GOLGA6L3P	GOLGA6L3	golgin A6 family like 3, pseudogene	pseudo
197765	chr6	87392971	87393350	+	0	NA	Intergenic	Intergenic	-3964	NR_026784	63914		NM_022084	ENSG00000111850	LINC01590	C6orf164|dJ102H19.4	long intergenic non-protein coding RNA 1590	ncRNA
192	chr1	686021	686700	+	0	NA	exon (NM_001005277, exon 1 of 1).2	exon (NM_001005277, exon 1 of 1).2	294	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
193051	chr6	28621421	28621680	+	0	NA	Intergenic	L1PA3|LINE|L1	-5373	NM_001329616	114821		NM_052923	ENSG00000232040	SCAND3	Buster4|FAM200D|ZBED9|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3	SCAN domain containing 3	protein-coding
90498	chr17	1451201	1451400	+	0	NA	intron (NM_016823, intron 1 of 2)	AluSx1|SINE|Alu	4932	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
62567	chr13	99967371	99967880	+	0	NA	intron (NM_033132, intron 1 of 1)	intron (NM_033132, intron 1 of 1)	1547	NR_146225	85416		NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
167585	chr3	129556151	129556450	+	0	NA	3' UTR (NM_015103, exon 36 of 36)	3' UTR (NM_015103, exon 36 of 36)	7915	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
84300	chr16	30088301	30088800	+	0	NA	exon (NM_004608, exon 6 of 9)	exon (NM_004608, exon 6 of 9)	3374	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
134965	chr2	152097471	152098380	+	0	NA	intron (NM_000726, intron 2 of 13)	intron (NM_000726, intron 2 of 13)	838	NM_001005746	785		NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
122817	chr19	50389321	50390180	+	0	NA	intron (NR_046402, intron 1 of 25)	AluSx|SINE|Alu	5403	NR_046402	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
206129	chr7	27641351	27642050	+	0	NA	intron (NM_152740, intron 2 of 7)	MARNA|DNA|TcMar-Mariner	21183	NM_152740	11112		NM_152740	ENSG00000106049	HIBADH	NS5ATP1	3-hydroxyisobutyrate dehydrogenase	protein-coding
148627	chr21	5698471	5698630	+	0	NA	Intergenic	Intergenic	129346	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
136127	chr2	173958721	173958980	+	0	NA	intron (NM_001172712, intron 3 of 6)	intron (NM_001172712, intron 3 of 6)	5030	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
215376	chr7	157409421	157410380	+	0	NA	exon (NM_058246, exon 9 of 10)	exon (NM_058246, exon 9 of 10)	-56331	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
113606	chr19	10297171	10297430	+	0	NA	TTS (NM_003259)	TTS (NM_003259)	7348	NM_003259	7087		NM_003259	ENSG00000105376	ICAM5	TLCN|TLN	intercellular adhesion molecule 5	protein-coding
56092	chr12	110688671	110690850	+	0	NA	promoter-TSS (NM_001040107)	promoter-TSS (NM_001040107)	17	NM_001040107	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
199668	chr6	122461321	122461600	+	0	NA	intron (NM_020755, intron 1 of 9)	L1PA2|LINE|L1	10347	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
213100	chr7	131133401	131133800	+	0	NA	intron (NM_001145354, intron 1 of 18)	AluSc8|SINE|Alu	23506	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
186952	chr5	139657471	139658130	+	0	NA	intron (NM_001317205, intron 1 of 2)	intron (NM_001317205, intron 1 of 2)	-1755	NM_001317207	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
120530	chr19	44894451	44894750	+	0	NA	intron (NM_001128916, intron 6 of 9)	intron (NM_001128916, intron 6 of 9)	3346	NM_001128917	10452		NM_006114	ENSG00000130204	TOMM40	C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40	translocase of outer mitochondrial membrane 40	protein-coding
158558	chr3	4491571	4492500	+	0	NA	intron (NR_108075, intron 1 of 1)	MIRb|SINE|MIR	1128	NR_108075	100996539		NR_108075	ENSG00000231249	ITPR1-DT	ITPR1-AS1	ITPR1 divergent transcript	ncRNA
83884	chr16	28948071	28948730	+	0	NA	Intergenic	AluY|SINE|Alu	-2597	NM_032815	84901		NM_032815	ENSG00000176953	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T cells 2 interacting protein	protein-coding
200351	chr6	134021851	134022030	+	0	NA	intron (NM_145176, intron 2 of 4)	intron (NM_145176, intron 2 of 4)	30684	NM_145176	154091		NM_145176	ENSG00000146411	SLC2A12	GLUT12|GLUT8	solute carrier family 2 member 12	protein-coding
224285	chr9	6424171	6424330	+	0	NA	intron (NR_046386, intron 2 of 16)	intron (NR_046386, intron 2 of 16)	11051	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
85328	chr16	50065421	50066630	+	0	NA	promoter-TSS (NM_001329729)	promoter-TSS (NM_001329729)	55	NM_182922	55027		NM_017939	ENSG00000155393	HEATR3	DBA21|SYO1	HEAT repeat containing 3	protein-coding
161039	chr3	38003021	38003750	+	0	NA	intron (NM_015873, intron 15 of 19)	MIR3|SINE|MIR	9247	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
20533	chr1	198690351	198690450	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	51360	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
31925	chr10	100527571	100527730	+	0	NA	intron (NM_001284368, intron 2 of 4)	intron (NM_001284368, intron 2 of 4)	2221	NM_005004	4714		NM_005004	ENSG00000166136	NDUFB8	ASHI|CI-ASHI|MC1DN32	NADH:ubiquinone oxidoreductase subunit B8	protein-coding
98112	chr17	45619901	45620980	+	0	NA	promoter-TSS (NM_001256299).3	promoter-TSS (NM_001256299).3	94	NM_001256299	104909134		NM_001256299	ENSG00000263715	LINC02210-CRHR1	CRHR1-IT1-CRHR1|MGC57346-CRHR1	LINC02210-CRHR1 readthrough	protein-coding
221133	chr8	118499871	118500030	+	0	NA	intron (NM_207506, intron 2 of 3)	intron (NM_207506, intron 2 of 3)	-121051	NR_038210	552860		NR_038210		SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA
46424	chr11	126480551	126481100	+	0	NA	intron (NM_001161707, intron 4 of 13)	intron (NM_001161707, intron 4 of 13)	74738	NM_001254759	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
57448	chr12	121910521	121910780	+	0	NA	intron (NR_048555, intron 3 of 4)	AluSq2|SINE|Alu	-7942	NM_144668	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
8260	chr1	39788371	39789700	+	0	NA	promoter-TSS (NR_135805)	promoter-TSS (NR_135805)	59	NR_135805	101929536		NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
113956	chr19	10765751	10766050	+	0	NA	intron (NM_001005362, intron 2 of 19)	intron (NM_001005362, intron 2 of 19)	-14354	NR_039903	100616425		NR_039903	ENSG00000265879	MIR4748	mir-4748	microRNA 4748	ncRNA
229122	chr9	114433701	114434250	+	0	NA	intron (NM_015404, intron 3 of 11)	intron (NM_015404, intron 3 of 11)	-7807	NM_001346890	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
134851	chr2	148663771	148664130	+	0	NA	intron (NM_015630, intron 1 of 13)	MER1B|DNA|hAT-Charlie	19199	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
186602	chr5	138515171	138515530	+	0	NA	intron (NM_001291974, intron 4 of 10)	AluSz|SINE|Alu	26361	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
92849	chr17	16284551	16284850	+	0	NA	intron (NM_004278, intron 2 of 6)	LTR8|LTR|ERV1	2686	NR_031698	100302124		NR_031698	ENSG00000221355	MIR1288	MIRN1288|hsa-mir-1288	microRNA 1288	ncRNA
172500	chr4	2254721	2255850	+	0	NA	intron (NM_006454, intron 3 of 5)	intron (NM_006454, intron 3 of 5)	-5129	NR_039964	100616358		NR_039964	ENSG00000284276	MIR4800	mir-4800	microRNA 4800	ncRNA
96190	chr17	39740751	39741750	+	0	NA	intron (NM_001242443, intron 1 of 14)	L2c|LINE|L2	1283	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
124426	chr19	58469151	58469250	+	0	NA	exon (NM_014347, exon 2 of 4)	exon (NM_014347, exon 2 of 4)	2120	NM_014347	25799		NM_014347	ENSG00000083812	ZNF324	ZF5128|ZNF324A	zinc finger protein 324	protein-coding
1369	chr1	2514271	2514800	+	0	NA	intron (NM_018216, intron 10 of 18).2	intron (NM_018216, intron 10 of 18).2	12061	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
90733	chr17	2022371	2022950	+	0	NA	intron (NM_178568, intron 1 of 1)	intron (NM_178568, intron 1 of 1)	2674	NM_178568	146760		NM_178568	ENSG00000185924	RTN4RL1	NGRH2|NgR3	reticulon 4 receptor like 1	protein-coding
95971	chr17	39153601	39154000	+	0	NA	Intergenic	tRNA-Cys-TGY|tRNA|tRNA	-2163	NM_020405	57125		NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
91979	chr17	7415471	7415630	+	0	NA	exon (NM_020795, exon 6 of 7)	exon (NM_020795, exon 6 of 7)	-4774	NM_199339	374768		NM_199339	ENSG00000181323	SPEM1	C17orf83	spermatid maturation 1	protein-coding
35201	chr11	807351	807730	+	0	NA	Intergenic	AluY|SINE|Alu	-2309	NM_145887	55367		NM_018494	ENSG00000177595	PIDD1	LRDD|MRT75|PIDD	p53-induced death domain protein 1	protein-coding
31209	chr10	91249901	91250300	+	0	NA	intron (NM_032373, intron 5 of 9)	intron (NM_032373, intron 5 of 9)	29437	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
14504	chr1	144566651	144566750	+	0	NA	Intergenic	Intergenic	-14757	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
4774	chr1	23542601	23543050	+	0	NA	Intergenic	AluJb|SINE|Alu	-11592	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
74026	chr15	52217171	52217430	+	0	NA	intron (NM_018728, intron 32 of 40)	intron (NM_018728, intron 32 of 40)	-25908	NM_016194	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
58010	chr12	124380271	124380680	+	0	NA	intron (NM_001077261, intron 19 of 47)	intron (NM_001077261, intron 19 of 47)	-43233	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
223263	chr8	143714301	143714700	+	0	NA	TTS (NR_134306)	TTS (NR_134306)	-1849	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
95302	chr17	35540711	35541780	+	0	NA	Intergenic	L1ME4c|LINE|L1	-3384	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
88543	chr16	85448501	85449200	+	0	NA	Intergenic	Intergenic	-142525	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
19561	chr1	179084601	179084800	+	0	NA	intron (NM_022371, intron 2 of 5)	intron (NM_022371, intron 2 of 5)	2630	NM_022371	64222		NM_022371	ENSG00000186283	TOR3A	ADIR|ADIR2	torsin family 3 member A	protein-coding
208105	chr7	56817021	56817280	+	0	NA	Intergenic	Intergenic	-4414	NR_130727	401357		NR_130727		LOC401357	-	uncharacterized LOC401357	ncRNA
191853	chr6	15254201	15254950	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	5720	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
96165	chr17	39703751	39703850	+	0	NA	intron (NM_001382783, intron 2 of 27)	intron (NM_001382783, intron 2 of 27)	3736	NM_004448	2064		NM_004448	ENSG00000141736	ERBB2	CD340|HER-2|HER-2/neu|HER2|MLN 19|MLN-19|NEU|NGL|TKR1|VSCN2|c-ERB-2|c-ERB2|p185(erbB2)	erb-b2 receptor tyrosine kinase 2	protein-coding
214835	chr7	151255951	151256450	+	0	NA	intron (NM_001003802, intron 2 of 13)	AluSz|SINE|Alu	-7506	NM_001003801	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
560	chr1	1252301	1252980	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-5918	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
238739	chrX	154311171	154311480	+	0	NA	intron (NM_001145933, intron 5 of 12)	intron (NM_001145933, intron 5 of 12)	6155	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
108737	chr18	77100701	77101130	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	31868	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
126724	chr2	30186171	30186930	+	0	NA	promoter-TSS (NR_145719)	promoter-TSS (NR_145719)	-884	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
128048	chr2	47752221	47752700	+	0	NA	Intergenic	MER90a|LTR|ERV1	-30622	NM_001281493	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
195725	chr6	39166421	39166830	+	0	NA	Intergenic	Intergenic	-51439	NM_001304793	55776		NM_018322	ENSG00000112167	SAYSD1	C6orf64	SAYSVFN motif domain containing 1	protein-coding
65837	chr14	54899821	54900330	+	0	NA	intron (NM_001024024, intron 1 of 6)	AluSq2|SINE|Alu	2749	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
151842	chr22	18532221	18532480	+	0	NA	Intergenic	AluJb|SINE|Alu	4548	NM_001242313	728229		NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
28475	chr10	49512221	49512580	+	0	NA	intron (NM_001346440, intron 5 of 20)	intron (NM_001346440, intron 5 of 20)	11881	NM_170753	267004		NM_170753		PGBD3	-	piggyBac transposable element derived 3	protein-coding
65014	chr14	39015321	39015600	+	0	NA	Intergenic	Intergenic	-87680	NR_146545	105370458		NR_146545	ENSG00000258651	SEC23A-AS1	-	SEC23A antisense RNA 1	ncRNA
229279	chr9	120693151	120693480	+	0	NA	intron (NM_001080497, intron 1 of 5)	(AAAAAG)n|Simple_repeat|Simple_repeat	21155	NM_001080497	1955		NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
95748	chr17	38598501	38599050	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	7177	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
87882	chr16	78310921	78311200	+	0	NA	intron (NM_016373, intron 5 of 8)	intron (NM_016373, intron 5 of 8)	211406	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19292	chr1	172845321	172845730	+	0	NA	Intergenic	Intergenic	186422	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
73608	chr15	44559301	44559750	+	0	NA	intron (NM_003758, intron 6 of 7)	AluY|SINE|Alu	22378	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
177757	chr4	122652171	122652700	+	0	NA	intron (NR_104126, intron 10 of 10)	intron (NR_104126, intron 10 of 10)	-31369	NM_021803	59067		NM_021803	ENSG00000138684	IL21	CVID11|IL-21|Za11	interleukin 21	protein-coding
192828	chr6	27126601	27127580	+	0	NA	Intergenic	Intergenic	5705	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
217133	chr8	25346751	25347050	+	0	NA	intron (NM_024940, intron 26 of 51)	intron (NM_024940, intron 26 of 51)	1498	NR_106936	102465527		NR_106936	ENSG00000274988	MIR6876	hsa-mir-6876	microRNA 6876	ncRNA
70926	chr14	104342151	104342330	+	0	NA	Intergenic	(GGGGC)n|Simple_repeat|Simple_repeat	118656	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
25306	chr10	6208771	6209580	+	0	NA	intron (NM_001314063, intron 1 of 15)	intron (NM_001314063, intron 1 of 15)	6243	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
69466	chr14	95099071	95099230	+	0	NA	intron (NM_177438, intron 22 of 26)	intron (NM_177438, intron 22 of 26)	34353	NM_001195573	23405		NM_030621	ENSG00000100697	DICER1	DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2|aviD	dicer 1, ribonuclease III	protein-coding
134300	chr2	135960271	135961430	+	0	NA	intron (NM_001293312, intron 3 of 14)	intron (NM_001293312, intron 3 of 14)	-24326	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
167359	chr3	128773221	128773950	+	0	NA	intron (NM_004637, intron 1 of 5)	SVA_C|Retroposon|SVA	47402	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
203914	chr7	1508301	1508730	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-4126	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
176147	chr4	83164551	83164650	+	0	NA	Intergenic	L1PA5|LINE|L1	-49871	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
136974	chr2	190434671	190434830	+	0	NA	intron (NM_001375988, intron 2 of 7)	intron (NM_001375988, intron 2 of 7)	25892	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
28323	chr10	46297821	46298330	+	0	NA	intron (NM_001278688, intron 9 of 16)	intron (NM_001278688, intron 9 of 16)	11078	NM_001278688	195977		NM_001278688	ENSG00000274209	ANTXRL	-	ANTXR like	protein-coding
133212	chr2	113172371	113172850	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-1361	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
126623	chr2	28802901	28803830	+	0	NA	TTS (NM_002709)	TTS (NM_002709)	-7469	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
79114	chr16	205601	205800	+	0	NA	intron (NM_018032, intron 5 of 8)	AluY|SINE|Alu	23749	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
200800	chr6	137896501	137896700	+	0	NA	Intergenic	AluSq|SINE|Alu	-28367	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
3352	chr1	15523771	15525800	+	0	NA	promoter-TSS (NM_001278054)	promoter-TSS (NM_001278054)	5	NM_032996	842		NM_001229	ENSG00000132906	CASP9	APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56	caspase 9	protein-coding
97835	chr17	44935121	44935600	+	0	NA	promoter-TSS (NR_106841)	promoter-TSS (NR_106841)	-679	NR_106841	102466734		NR_106841	ENSG00000278223	MIR6783	hsa-mir-6783	microRNA 6783	ncRNA
59784	chr13	30253121	30253780	+	0	NA	intron (NM_032116, intron 4 of 10)	intron (NM_032116, intron 4 of 10)	53561	NM_001014380	84056		NM_032116	ENSG00000102781	KATNAL1	-	katanin catalytic subunit A1 like 1	protein-coding
206272	chr7	29684271	29685100	+	0	NA	promoter-TSS (NR_158194)	promoter-TSS (NR_158194)	453	NR_024278	646762		NR_024278		LOC646762	-	uncharacterized LOC646762	ncRNA
197476	chr6	75546421	75546680	+	0	NA	Intergenic	Intergenic	-52750	NM_001300866	27145		NM_015687	ENSG00000118407	FILIP1	FILIP|NMDF	filamin A interacting protein 1	protein-coding
130698	chr2	86564871	86565030	+	0	NA	intron (NM_001198954, intron 3 of 7)	intron (NM_001198954, intron 3 of 7)	-1507	NR_036454	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
133983	chr2	130822021	130823000	+	0	NA	Intergenic	Intergenic	-14404	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
101639	chr17	68240071	68240630	+	0	NA	intron (NM_001346472, intron 2 of 7)	HAL1|LINE|L1	-7224	NM_001346474	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
231637	chr9	131594501	131595030	+	0	NA	intron (NM_001377935, intron 17 of 26)	intron (NM_001377935, intron 17 of 26)	49242	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
219486	chr8	73867451	73867990	+	0	NA	intron (NR_073119, intron 1 of 5)	AluSz6|SINE|Alu	11142	NR_073120	55284		NM_018299	ENSG00000104343	UBE2W	UBC-16|UBC16	ubiquitin conjugating enzyme E2 W	protein-coding
156606	chr22	41546771	41547450	+	0	NA	Intergenic	AluSp|SINE|Alu	-2504	NM_001282884	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
32117	chr10	101223001	101223800	+	0	NA	Intergenic	CpG	5560	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
42189	chr11	67985671	67986030	+	0	NA	Intergenic	SATR1|Satellite|Satellite	18247	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
136038	chr2	172483101	172483500	+	0	NA	intron (NM_001316306, intron 11 of 25)	intron (NM_001316306, intron 11 of 25)	-17278	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
167053	chr3	126909301	126909500	+	0	NA	intron (NM_032343, intron 5 of 7)	intron (NM_032343, intron 5 of 7)	-79194	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
103930	chr17	79830971	79831700	+	0	NA	Intergenic	Intergenic	7883	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
145285	chr20	41027701	41030100	+	0	NA	promoter-TSS (NM_003286)	promoter-TSS (NM_003286)	78	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
227159	chr9	86353661	86355400	+	0	NA	promoter-TSS (NM_001185059)	promoter-TSS (NM_001185059)	-120	NM_001330718	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
160910	chr3	34248501	34248700	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	449970	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
234011	chrX	3698421	3698680	+	0	NA	intron (NM_005044, intron 1 of 8)	(TTG)n|Simple_repeat|Simple_repeat	15099	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
238951	chrX	155008751	155008850	+	0	NA	intron (NM_000132, intron 1 of 25)	intron (NM_000132, intron 1 of 25)	13923	NM_000132	2157		NM_000132	ENSG00000185010	F8	AHF|DXS1253E|F8B|F8C|FVIII|HEMA|THPH13	coagulation factor VIII	protein-coding
76544	chr15	75201101	75202300	+	0	NA	promoter-TSS (NM_015492)	promoter-TSS (NM_015492)	-182	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
81628	chr16	10874721	10875600	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2038	NM_000246	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
226749	chr9	76064321	76064580	+	0	NA	intron (NM_006200, intron 5 of 20)	SVA_F|Retroposon|SVA	173777	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
148452	chr20	64007051	64007750	+	0	NA	intron (NM_012469, intron 9 of 20)	(CCCCT)n|Simple_repeat|Simple_repeat	26268	NM_012469	24148		NM_012469	ENSG00000101161	PRPF6	ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6	pre-mRNA processing factor 6	protein-coding
60684	chr13	43783751	43784050	+	0	NA	intron (NM_001347966, intron 1 of 17)	intron (NM_001347966, intron 1 of 17)	3072	NM_001347964	55068		NM_017993	ENSG00000120658	ENOX1	CNOX|PIG38|bA64J21.1|cCNOX	ecto-NOX disulfide-thiol exchanger 1	protein-coding
156956	chr22	42347271	42347830	+	0	NA	Intergenic	MIRc|SINE|MIR	21658	NR_120597	102723775		NR_120595	ENSG00000229891	LINC01315	C22orf32-1|lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
122254	chr19	49032671	49033250	+	0	NA	exon (NM_001319065, exon 3 of 3)	exon (NM_001319065, exon 3 of 3)	1070	NM_033378	114336		NM_033378	ENSG00000104818	CGB2	-	chorionic gonadotropin subunit beta 2	protein-coding
131563	chr2	96800601	96801820	+	0	NA	intron (NM_020184, intron 5 of 6)	intron (NM_020184, intron 5 of 6)	2932	NR_036074	100422928		NR_036074	ENSG00000264157	MIR3127	mir-3127	microRNA 3127	ncRNA
112201	chr19	5679901	5681330	+	0	NA	promoter-TSS (NM_198708)	promoter-TSS (NM_198708)	-99	NM_205767	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
208564	chr7	72817801	72818030	+	0	NA	intron (NM_001145440, intron 2 of 13)	MER51E|LTR|ERV1	10285	NM_001145440	441250		NM_001145440	ENSG00000277149	TYW1B	LINC00069|NCRNA00069|RSAFD2	tRNA-yW synthesizing protein 1 homolog B	protein-coding
25455	chr10	6603921	6604180	+	0	NA	Intergenic	Intergenic	-14666	NR_120634	101928150		NR_120634		LINC02648	-	long intergenic non-protein coding RNA 2648	ncRNA
163804	chr3	52408571	52408730	+	0	NA	intron (NM_004656, intron 3 of 16)	intron (NM_004656, intron 3 of 16)	1358	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
39575	chr11	61157901	61158100	+	0	NA	intron (NM_017966, intron 1 of 4)	MSTB|LTR|ERVL-MaLR	3426	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
94297	chr17	28730951	28731050	+	0	NA	intron (NM_178170, intron 1 of 14)	AluSq2|SINE|Alu	2212	NM_178170	284086		NM_178170	ENSG00000160602	NEK8	JCK|NEK12A|NPHP9|RHPD2	NIMA related kinase 8	protein-coding
29729	chr10	72089731	72090750	+	0	NA	Intergenic	Intergenic	-1208	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
125571	chr2	16394651	16394800	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	271109	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
238601	chrX	153923001	153923350	+	0	NA	intron (NM_001164741, intron 1 of 22)	intron (NM_001164741, intron 1 of 22)	3089	NM_001164741	393		NM_001666	ENSG00000089820	ARHGAP4	C1|RGC1|RhoGAP4|SrGAP4|p115	Rho GTPase activating protein 4	protein-coding
230160	chr9	127765951	127766480	+	0	NA	intron (NM_170600, intron 2 of 11)	intron (NM_170600, intron 2 of 11)	-3775	NM_001142531	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
209742	chr7	87192871	87193780	+	0	NA	exon (NM_001142327, exon 15 of 18)	exon (NM_001142327, exon 15 of 18)	26407	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
68392	chr14	80930601	80931680	+	0	NA	intron (NR_157142, intron 2 of 24)	Charlie3|DNA|hAT-Charlie	10598	NR_157142	145508		NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding
459	chr1	1139771	1139930	+	0	NA	intron (NR_038869, intron 1 of 2)	intron (NR_038869, intron 1 of 2)	2833	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
180208	chr5	1508371	1508530	+	0	NA	intron (NM_024830, intron 1 of 13)	MLT1B|LTR|ERVL-MaLR	2406	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
130666	chr2	86238351	86238750	+	0	NA	intron (NM_001164732, intron 3 of 4)	intron (NM_001164732, intron 3 of 4)	39093	NM_016622	51318		NM_016622	ENSG00000132313	MRPL35	L35mt|MRP-L35|bL35m	mitochondrial ribosomal protein L35	protein-coding
76052	chr15	72312521	72312980	+	0	NA	intron (NM_052840, intron 2 of 12)	intron (NM_052840, intron 2 of 12)	-6435	NM_001172685	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
238865	chrX	154525751	154526250	+	0	NA	Intergenic	AluJb|SINE|Alu	-9758	NM_001171134	60343		NM_021806	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	FAM3 metabolism regulating signaling molecule A	protein-coding
222057	chr8	130294251	130294350	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	2233	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
217716	chr8	30169801	30170650	+	0	NA	intron (NM_006571, intron 2 of 6)	intron (NM_006571, intron 2 of 6)	13856	NM_006571	10671		NM_006571	ENSG00000104671	DCTN6	WS-3|WS3|p27	dynactin subunit 6	protein-coding
181391	chr5	40678901	40680400	+	0	NA	promoter-TSS (NM_000958)	promoter-TSS (NM_000958)	-265	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
214769	chr7	151087101	151088150	+	0	NA	intron (NM_001350103, intron 1 of 18)	CpG	1150	NM_001350103	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
99370	chr17	49912821	49913080	+	0	NA	Intergenic	Intergenic	-56240	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
190987	chr6	3025451	3026280	+	0	NA	intron (NR_152848, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	1802	NR_152848	101927759		NR_132750		LOC101927759	-	uncharacterized LOC101927759	ncRNA
221512	chr8	124635121	124636100	+	0	NA	intron (NM_001363300, intron 3 of 12)	L2c|LINE|L2	92863	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
57555	chr12	122206771	122208580	+	0	NA	TTS (NM_001371333)	TTS (NM_001371333)	3966	NM_030765	79369		NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
212337	chr7	127415371	127415730	+	0	NA	Intergenic	Intergenic	-22842	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
25937	chr10	11340771	11340930	+	0	NA	intron (NR_126062, intron 1 of 2)	intron (NR_126062, intron 1 of 2)	3824	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
83419	chr16	27230121	27231150	+	0	NA	intron (NM_145080, intron 5 of 7)	intron (NM_145080, intron 5 of 7)	26660	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
98951	chr17	48640921	48641180	+	0	NA	Intergenic	Intergenic	-8491	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
101701	chr17	68487721	68488600	+	0	NA	intron (NM_001278433, intron 1 of 10)	L2a|LINE|L2	-23620	NM_212471	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
186819	chr5	139394001	139394950	+	0	NA	exon (NM_001161546, exon 1 of 1)	exon (NM_001161546, exon 1 of 1)	629	NM_001161546	389333		NM_001161546	ENSG00000228672	PROB1	C5orf65	proline rich basic protein 1	protein-coding
155005	chr22	37324551	37325500	+	0	NA	Intergenic	CpG	29814	NR_110515	100506271		NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA
154403	chr22	35317851	35318350	+	0	NA	intron (NR_156428, intron 2 of 13)	intron (NR_156428, intron 2 of 13)	-17540	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
36827	chr11	9840671	9841380	+	0	NA	intron (NM_030962, intron 25 of 39)	intron (NM_030962, intron 25 of 39)	1883	NR_120539	101928008		NR_120539	ENSG00000255476	LOC101928008	-	uncharacterized LOC101928008	ncRNA
183877	chr5	87276971	87277530	+	0	NA	intron (NM_022650, intron 1 of 24)	intron (NM_022650, intron 1 of 24)	8313	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
8871	chr1	43528951	43529830	+	0	NA	intron (NM_001329137, intron 2 of 34)	intron (NM_001329137, intron 2 of 34)	-1470	NM_001329139	5792		NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase receptor type F	protein-coding
233382	chr9	137519151	137519250	+	0	NA	intron (NM_001098537, intron 11 of 34)	intron (NM_001098537, intron 11 of 34)	31202	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
56104	chr12	110734001	110734200	+	0	NA	intron (NM_002710, intron 1 of 6)	L2b|LINE|L2	8791	NM_001244974	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
228582	chr9	104780971	104781130	+	0	NA	TTS (NM_005502)	TTS (NM_005502)	16921	NR_130760	55335		NM_018376	ENSG00000165028	NIPSNAP3B	FP944|NIPSNAP3|SNAP1	nipsnap homolog 3B	protein-coding
202581	chr6	158692551	158693050	+	0	NA	intron (NM_001318745, intron 3 of 14)	AluY|SINE|Alu	29397	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
112080	chr19	5337371	5337530	+	0	NA	intron (NM_130853, intron 1 of 28)	intron (NM_130853, intron 1 of 28)	3362	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
47513	chr12	4120171	4120730	+	0	NA	Intergenic	Intergenic	-153312	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
139599	chr2	225008371	225008530	+	0	NA	intron (NM_014689, intron 1 of 55)	AmnSINE1|SINE|5S-Deu-L2	2090	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
209597	chr7	77548221	77548880	+	0	NA	intron (NM_001131008, intron 1 of 17)	intron (NM_001131008, intron 1 of 17)	10507	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
93689	chr17	19368151	19368580	+	0	NA	intron (NM_001368769, intron 1 of 6)	intron (NM_001368769, intron 1 of 6)	-5627	NM_001243473	27077		NM_015681	ENSG00000108641	B9D1	B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1	B9 domain containing 1	protein-coding
212831	chr7	130486121	130487080	+	0	NA	TTS (NR_004382)	TTS (NR_004382)	253	NM_001253902	4232		NM_002402	ENSG00000106484	MEST	PEG1	mesoderm specific transcript	protein-coding
197449	chr6	75202101	75202780	+	0	NA	intron (NM_004370, intron 2 of 65)	intron (NM_004370, intron 2 of 65)	3613	NM_004370	1303		NM_004370	ENSG00000111799	COL12A1	BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2	collagen type XII alpha 1 chain	protein-coding
69280	chr14	93073271	93073430	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	5898	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
28093	chr10	43383751	43384480	+	0	NA	Intergenic	PrimLTR79|LTR|ERV1	12471	NM_001184963	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
179340	chr4	182925101	182925580	+	0	NA	Intergenic	Intergenic	-7863	NM_001921	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
179875	chr5	610501	610980	+	0	NA	intron (NR_103444, intron 2 of 2)	intron (NR_103444, intron 2 of 2)	1470	NR_103444	100996325		NR_103444		CEP72-DT	-	CEP72 divergent transcript	ncRNA
181897	chr5	54541621	54541880	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	23991	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
11164	chr1	87044501	87045230	+	0	NA	intron (NM_001134492, intron 1 of 4)	intron (NM_001134492, intron 1 of 4)	-84900	NR_026988	339524		NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
200214	chr6	131292401	131292800	+	0	NA	Intergenic	MER67B|LTR|ERV1	42196	NM_138633	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
210490	chr7	100165851	100166700	+	0	NA	intron (NM_024637, intron 3 of 3)	intron (NM_024637, intron 3 of 3)	2342	NM_024637	79690		NM_024637	ENSG00000197093	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
43348	chr11	76670371	76671280	+	0	NA	promoter-TSS (NM_001128922)	promoter-TSS (NM_001128922)	-78	NM_001128922	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
212516	chr7	128788321	128788830	+	0	NA	Intergenic	Intergenic	-2863	NM_001367762	64753		NM_022742	ENSG00000128596	CCDC136	NAG6	coiled-coil domain containing 136	protein-coding
207781	chr7	50210901	50211580	+	0	NA	Intergenic	Intergenic	-92824	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
82644	chr16	19118821	19119080	+	0	NA	non-coding (NR_028028, exon 2 of 2)	non-coding (NR_028028, exon 2 of 2)	4986	NM_001034841	162073		NM_001034841	ENSG00000205730	ITPRIPL2	D1C	ITPRIP like 2	protein-coding
38701	chr11	46619501	46620780	+	0	NA	intron (NM_001205121, intron 2 of 16)	AluSq|SINE|Alu	2587	NM_001346311	9776		NM_014741	ENSG00000175224	ATG13	KIAA0652|PARATARG8	autophagy related 13	protein-coding
210761	chr7	100686971	100687330	+	0	NA	intron (NR_164719, intron 9 of 26)	intron (NR_164719, intron 9 of 26)	7100	NM_001375767	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
173116	chr4	6561121	6561380	+	0	NA	intron (NM_001206994, intron 1 of 9)	MER45C|DNA|hAT-Tip100	2549	NM_001206994	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
64707	chr14	34059751	34060700	+	0	NA	Intergenic	CpG	-109151	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
143727	chr20	32320401	32320600	+	0	NA	intron (NM_004798, intron 5 of 8)	(TG)n|Simple_repeat|Simple_repeat	-37831	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
130912	chr2	87469301	87470200	+	0	NA	promoter-TSS (NR_146460)	promoter-TSS (NR_146460)	-200	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
118706	chr19	38216401	38216600	+	0	NA	intron (NM_004647, intron 6 of 10)	intron (NM_004647, intron 6 of 10)	7722	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
52996	chr12	57507421	57507900	+	0	NA	intron (NM_004990, intron 11 of 20)	SVA_D|Retroposon|SVA	-5028	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
86925	chr16	68088601	68089730	+	0	NA	intron (NM_173165, intron 1 of 9)	intron (NM_173165, intron 1 of 9)	3795	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
199647	chr6	122381551	122382000	+	0	NA	Intergenic	Intergenic	-17776	NM_001135564	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
224102	chr9	4572421	4572750	+	0	NA	intron (NM_004170, intron 7 of 11)	AluJb|SINE|Alu	82117	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
130283	chr2	84881731	84882500	+	0	NA	Intergenic	Intergenic	-1031	NM_001307978	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
229246	chr9	115015071	115015230	+	0	NA	Intergenic	Intergenic	-84555	NM_001252290	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
183371	chr5	77239101	77239300	+	0	NA	intron (NM_001029853, intron 1 of 20)	L1MEf|LINE|L1	28520	NM_003719	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
149017	chr21	14544051	14544750	+	0	NA	intron (NM_001286523, intron 1 of 8)	intron (NM_001286523, intron 1 of 8)	1915	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
195892	chr6	41705821	41706630	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	27385	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
141538	chr2	241312721	241312980	+	0	NA	intron (NM_005336, intron 1 of 27)	intron (NM_005336, intron 1 of 27)	-2337	NM_006155	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
43702	chr11	85986501	85986700	+	0	NA	intron (NM_001008660, intron 12 of 19)	AluYb8|SINE|Alu	82484	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
74396	chr15	58924901	58925300	+	0	NA	intron (NR_135043, intron 1 of 18)	intron (NR_135043, intron 1 of 18)	8579	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
220963	chr8	113437751	113438400	+	0	NA	Intergenic	Intergenic	-1136	NM_001363185	114788		NM_052900	ENSG00000164796	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
137611	chr2	197299921	197300600	+	0	NA	intron (NR_046837, intron 2 of 5)	intron (NR_046837, intron 2 of 5)	2259	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
80269	chr16	2230851	2231150	+	0	NA	intron (NM_004424, intron 3 of 13)	intron (NM_004424, intron 3 of 13)	-5444	NM_001374	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
163037	chr3	49856271	49857780	+	0	NA	promoter-TSS (NM_005879)	promoter-TSS (NM_005879)	-461	NM_005879	10293		NM_005879	ENSG00000183763	TRAIP	RNF206|SCKL9|TRIP	TRAF interacting protein	protein-coding
146063	chr20	47487101	47488180	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-14247	NM_181659	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
209411	chr7	76347221	76347480	+	0	NA	intron (NM_012479, intron 1 of 1)	AluSq2|SINE|Alu	11641	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
181436	chr5	40833121	40833380	+	0	NA	promoter-TSS (NR_002583)	promoter-TSS (NR_002583)	-515	NR_002583	619564		NR_002583	ENSG00000212296	SNORD72	HBII-240	small nucleolar RNA, C/D box 72	snoRNA
35886	chr11	2399731	2401500	+	0	NA	promoter-TSS (NM_005706)	promoter-TSS (NM_005706)	-135	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
71511	chr14	106115471	106115630	+	0	NA	Intergenic	Intergenic	-143281	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
75519	chr15	66497021	66498120	+	0	NA	promoter-TSS (NR_039737)	promoter-TSS (NR_039737)	192	NM_001329615	10302		NM_006049	ENSG00000174446	SNAPC5	SNAP19	small nuclear RNA activating complex polypeptide 5	protein-coding
42387	chr11	68870651	68870750	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-28769	NM_001031847	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
32319	chr10	102172671	102173280	+	0	NA	Intergenic	AluY|SINE|Alu	20586	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
84471	chr16	30470171	30470390	+	0	NA	Intergenic	L1MB7|LINE|L1	-2462	NM_002209	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
81446	chr16	8874451	8874980	+	0	NA	Intergenic	Intergenic	-5703	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
230019	chr9	127198051	127198480	+	0	NA	intron (NM_001366400, intron 13 of 18)	intron (NM_001366400, intron 13 of 18)	-65397	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
100017	chr17	57950671	57951030	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	4562	NM_001271875	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
9306	chr1	46492571	46492730	+	0	NA	intron (NM_172225, intron 2 of 5)	intron (NM_172225, intron 2 of 5)	2814	NM_172225	127343		NM_147192	ENSG00000197587	DMBX1	Atx|MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
98248	chr17	46171751	46172500	+	0	NA	exon (NM_001379198, exon 3 of 16).3	exon (NM_001379198, exon 3 of 16).3	20657	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
149230	chr21	25566621	25566900	+	0	NA	intron (NR_001458, intron 1 of 2)	MIR|SINE|MIR	4615	NR_001458	114614		NR_001458	ENSG00000234883	MIR155HG	BIC|BIC-155|MIRHG2|NCRNA00172|miPEP155	MIR155 host gene	ncRNA
2244	chr1	8877421	8879600	+	0	NA	promoter-TSS (NR_038351)	promoter-TSS (NR_038351)	176	NM_001353346	2023		NM_001428	ENSG00000074800	ENO1	ENO1-IT1|ENO1L1|HEL-S-17|MPB1|NNE|PPH	enolase 1	protein-coding
58641	chr12	132510471	132511780	+	0	NA	non-coding (NR_168498, exon 4 of 4)	non-coding (NR_168498, exon 4 of 4)	5719	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
236926	chrX	96693371	96693530	+	0	NA	intron (NM_007309, intron 1 of 26)	intron (NM_007309, intron 1 of 26)	8608	NM_006729	1730		NM_006729	ENSG00000147202	DIAPH2	DIA|DIA2|DRF2|POF|POF2|POF2A	diaphanous related formin 2	protein-coding
171012	chr3	194768801	194769950	+	0	NA	promoter-TSS (NR_146990)	promoter-TSS (NR_146990)	-666	NR_146990	105374293		NR_146990	ENSG00000230401	LINC01972	-	long intergenic non-protein coding RNA 1972	ncRNA
117364	chr19	19558051	19558350	+	0	NA	Intergenic	Intergenic	19935	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
100384	chr17	60139651	60140380	+	0	NA	Intergenic	CpG	-9958	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
45490	chr11	118618901	118619300	+	0	NA	intron (NM_001144759, intron 4 of 20)	intron (NM_001144759, intron 4 of 20)	11485	NM_001144759	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
74158	chr15	55279401	55281130	+	0	NA	intron (NM_183235, intron 1 of 6)	MIRc|SINE|MIR	-9343	NM_183236	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
148920	chr21	9126871	9127430	+	0	NA	intron (NR_038329, intron 2 of 2)	intron (NR_038329, intron 2 of 2)	2611	NR_038327	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
114205	chr19	11426651	11426950	+	0	NA	intron (NM_001302453, intron 4 of 12)	intron (NM_001302453, intron 4 of 12)	-7486	NM_001035223	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
13452	chr1	114489921	114490700	+	0	NA	intron (NM_033020, intron 1 of 18)	L1MB8|LINE|L1	20893	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
223686	chr8	144415701	144416350	+	0	NA	exon (NM_017767, exon 1 of 11)	exon (NM_017767, exon 1 of 11)	424	NM_017767	55630		NM_017767	ENSG00000147804	SLC39A4	AEZ|AWMS2|ZIP4	solute carrier family 39 member 4	protein-coding
172557	chr4	2409501	2410200	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	8795	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
83843	chr16	28871121	28871380	+	0	NA	intron (NM_001145812, intron 5 of 9)	AluSz|SINE|Alu	-7238	NM_004320	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
123180	chr19	52335971	52336930	+	0	NA	5' UTR (NM_001161427, exon 1 of 5)	5' UTR (NM_001161427, exon 1 of 5)	205	NM_001161426	162963		NM_173530	ENSG00000167554	ZNF610	-	zinc finger protein 610	protein-coding
104813	chr17	81805101	81805300	+	0	NA	intron (NM_000160, intron 1 of 13)	intron (NM_000160, intron 1 of 13)	1050	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
193287	chr6	30062601	30063130	+	0	NA	intron (NM_170783, intron 3 of 3)	AluJb|SINE|Alu	1600	NR_103864	30834		NM_014596	ENSG00000066379	POLR1H	A12.2|HTEX-6|HTEX6|Rpa12|TCTEX6|TEX6|ZNRD1|ZR14|hZR14|tctex-6	RNA polymerase I subunit H	protein-coding
173733	chr4	16000871	16001030	+	0	NA	intron (NM_001371408, intron 12 of 24)	intron (NM_001371408, intron 12 of 24)	-37775	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
125820	chr2	24237401	24237600	+	0	NA	intron (NM_147152, intron 29 of 29)	intron (NM_147152, intron 29 of 29)	62447	NM_001040710	653140		NM_001040710	ENSG00000186453	FAM228A	C2orf84	family with sequence similarity 228 member A	protein-coding
213157	chr7	131554271	131554780	+	0	NA	intron (NM_005397, intron 1 of 7)	intron (NM_005397, intron 1 of 7)	2103	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
74851	chr15	63524321	63524780	+	0	NA	intron (NR_046342, intron 1 of 15)	MLT1H1|LTR|ERVL-MaLR	19957	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
45465	chr11	118564001	118564400	+	0	NA	intron (NM_001168618, intron 2 of 11)	AluSz|SINE|Alu	1731	NM_001168618	56912		NM_020153	ENSG00000118096	IFT46	C11orf2|C11orf60|CFAP32|FAP32	intraflagellar transport 46	protein-coding
230313	chr9	127961851	127961950	+	0	NA	intron (NM_001035254, intron 1 of 10)	L2a|LINE|L2	-11186	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
111860	chr19	4610151	4610580	+	0	NA	Intergenic	Intergenic	-29151	NM_152362	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
178082	chr4	140149021	140149430	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	4959	NM_018717	55534		NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3	mastermind like transcriptional coactivator 3	protein-coding
189061	chr5	170261821	170263080	+	0	NA	intron (NM_005565, intron 13 of 20)	intron (NM_005565, intron 13 of 20)	29444	NM_001305393	133874		NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding
158921	chr3	10018751	10018850	+	0	NA	intron (NR_002786, intron 2 of 2)	intron (NR_002786, intron 2 of 2)	7336	NR_002786	152302		NR_002786	ENSG00000186162	CIDECP1	CICE|CIDECP	CIDEC pseudogene 1	pseudo
234884	chrX	30602951	30603380	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-25399	NM_025159	80231		NM_025159	ENSG00000120280	TASL	CXorf21	TLR adaptor interacting with endolysosomal SLC15A4	protein-coding
146369	chr20	49272921	49273180	+	0	NA	intron (NM_021035, intron 2 of 13)	intron (NM_021035, intron 2 of 13)	5007	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
66049	chr14	58330721	58331800	+	0	NA	intron (NM_023000, intron 11 of 23)	intron (NM_023000, intron 11 of 23)	32705	NM_002892	5926		NM_002892	ENSG00000032219	ARID4A	RBBP-1|RBBP1|RBP-1|RBP1	AT-rich interaction domain 4A	protein-coding
13234	chr1	112678501	112678700	+	0	NA	intron (NM_001369507, intron 1 of 19)	L2c|LINE|L2	3862	NM_001369507	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
174253	chr4	37999171	37999680	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	39027	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
232015	chr9	133362071	133363130	+	0	NA	3' UTR (NM_001280789, exon 6 of 6).2	3' UTR (NM_001280789, exon 6 of 6).2	6050	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
159231	chr3	12910451	12911030	+	0	NA	intron (NM_014869, intron 10 of 13)	intron (NM_014869, intron 10 of 13)	-25529	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
150434	chr21	42424751	42426250	+	0	NA	intron (NM_001243467, intron 6 of 11)	intron (NM_001243467, intron 6 of 11)	21598	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
149384	chr21	31088001	31088400	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-49724	NM_001099219	728299		NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
100230	chr17	59327951	59328600	+	0	NA	Intergenic	L2a|LINE|L2	-3380	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
8521	chr1	40992021	40992280	+	0	NA	intron (NR_125440, intron 7 of 17)	L2c|LINE|L2	3631	NM_001301237	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
33966	chr10	124646951	124647050	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-57028	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
79535	chr16	846721	846980	+	0	NA	Intergenic	CpG	41407	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
44125	chr11	96075521	96075930	+	0	NA	intron (NM_032427, intron 2 of 4)	L2b|LINE|L2	-151618	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
53931	chr12	71754471	71756030	+	0	NA	exon (NM_014999, exon 1 of 7)	exon (NM_014999, exon 1 of 7)	387	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
37284	chr11	14700671	14700830	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	56946	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
204585	chr7	5293401	5293980	+	0	NA	intron (NM_001300847, intron 5 of 10)	AluJr|SINE|Alu	10747	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
120362	chr19	43607551	43608250	+	0	NA	exon (NM_182498, exon 3 of 3)	exon (NM_182498, exon 3 of 3)	-4188	NM_001145641	100170229		NM_001145641	ENSG00000226763	SRRM5	ZNF576	serine/arginine repetitive matrix 5	protein-coding
183658	chr5	80275271	80275680	+	0	NA	Intergenic	Kanga1d|DNA|TcMar-Tc2	-19427	NR_126060	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
224474	chr9	16058021	16058280	+	0	NA	Intergenic	Intergenic	218163	NM_001364979	100129385		NM_001271829	ENSG00000205549	LINC03041	C9orf92|Em:AL513424.1	long intergenic non-protein coding RNA 3041	ncRNA
202306	chr6	157238051	157238850	+	0	NA	Intergenic	(TGGTGA)n|Simple_repeat|Simple_repeat	85069	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
163210	chr3	50240951	50241630	+	0	NA	intron (NM_001282618, intron 1 of 7)	intron (NM_001282618, intron 1 of 7)	5086	NM_001282618	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
239188	chrY	12661351	12662700	+	0	NA	promoter-TSS (NR_001545)	promoter-TSS (NR_001545)	-342	NR_001545	64595		NR_001545	ENSG00000114374	TTTY15	NCRNA00138	testis expressed transcript, Y-linked 15	ncRNA
3882	chr1	17011331	17012950	+	0	NA	promoter-TSS (NM_022089)	promoter-TSS (NM_022089)	-212	NM_001141973	23400		NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9|SPG78	ATPase cation transporting 13A2	protein-coding
61338	chr13	50686651	50686950	+	0	NA	Intergenic	Intergenic	-121055	NR_046551	100874074		NR_046551	ENSG00000176124	DLEU7-AS1	-	DLEU7 antisense RNA 1	ncRNA
226776	chr9	76569771	76570530	+	0	NA	Intergenic	AluSz6|SINE|Alu	69517	NM_001097636	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
142894	chr20	17960571	17960750	+	0	NA	intron (NM_001282454, intron 1 of 12)	AluSz|SINE|Alu	2286	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
164302	chr3	57670501	57670700	+	0	NA	intron (NM_152678, intron 3 of 19)	MER34A|LTR|ERV1	22477	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
18380	chr1	161386001	161386200	+	0	NA	Intergenic	AluSp|SINE|Alu	-18224	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
235291	chrX	42127801	42128930	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-204811	NM_001367721	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
7056	chr1	31977871	31978480	+	0	NA	Intergenic	Intergenic	-35693	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
183908	chr5	87385771	87386950	+	0	NA	intron (NM_022650, intron 22 of 24)	intron (NM_022650, intron 22 of 24)	26544	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
107115	chr18	35066951	35067250	+	0	NA	intron (NR_046177, intron 1 of 6)	Tigger20a|DNA|TcMar-Tigger	25687	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
68022	chr14	75141951	75142550	+	0	NA	intron (NM_006827, intron 3 of 4)	MIR3|SINE|MIR	-15202	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
86717	chr16	67560071	67560230	+	0	NA	Intergenic	AluSp|SINE|Alu	2159	NR_158165	107984813		NR_158165	ENSG00000259804	CTCF-DT	-	CTCF divergent transcript	ncRNA
173634	chr4	13491071	13491240	+	0	NA	Intergenic	LTR50|LTR|ERVL	-6790	NM_001159601	9364		NM_004249	ENSG00000157869	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
117856	chr19	32347271	32347430	+	0	NA	intron (NM_001136156, intron 2 of 6)	MIRc|SINE|MIR	1740	NM_001136156	22847		NM_014910	ENSG00000168813	ZNF507	Zfp507	zinc finger protein 507	protein-coding
84370	chr16	30241551	30241850	+	0	NA	intron (NM_001321892, intron 3 of 8)	AluSg|SINE|Alu	4155	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
194231	chr6	32413451	32414100	+	0	NA	Intergenic	MIRc|SINE|MIR	-6645	NM_001304561	56244		NM_019602	ENSG00000204290	BTNL2	BTL-II|BTN7|HSBLMHC1|SS2	butyrophilin like 2	protein-coding
45856	chr11	119474571	119475080	+	0	NA	intron (NR_034160, intron 3 of 3)	intron (NR_034160, intron 3 of 3)	-49840	NM_001311162	7070		NM_006288	ENSG00000154096	THY1	CD90|CDw90	Thy-1 cell surface antigen	protein-coding
200933	chr6	139157721	139158080	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	22820	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
75557	chr15	66961271	66961530	+	0	NA	Intergenic	Intergenic	-4885	NR_135687	102723481		NR_135687	ENSG00000259289	SMASR	LINC02206	SMAD3 associated long non-coding RNA	ncRNA
33837	chr10	124152951	124153450	+	0	NA	Intergenic	Intergenic	-59602	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
32357	chr10	102383751	102384650	+	0	NA	Intergenic	MER21B|LTR|ERVL	-9910	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
49965	chr12	41363651	41363750	+	0	NA	intron (NM_001164595, intron 3 of 9)	intron (NM_001164595, intron 3 of 9)	-74039	NM_013377	29951		NM_013377	ENSG00000165966	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
193751	chr6	31273811	31274630	+	0	NA	Intergenic	Intergenic	-2084	NM_001243042	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
182244	chr5	57173001	57175280	+	0	NA	promoter-TSS (NM_022913)	promoter-TSS (NM_022913)	81	NM_022913	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
197065	chr6	53701421	53701680	+	0	NA	Intergenic	L2c|LINE|L2	-35794	NM_001003760	401265		NM_001003760	ENSG00000124743	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch like family member 31	protein-coding
141029	chr2	238185071	238186000	+	0	NA	intron (NM_030768, intron 5 of 11)	AluY|SINE|Alu	18160	NM_030768	80895		NM_030768	ENSG00000132323	ILKAP	ILKAP2|ILKAP3|PP2C-DELTA|PP2CD|PPM1O	ILK associated serine/threonine phosphatase	protein-coding
4093	chr1	19206151	19206680	+	0	NA	intron (NM_020765, intron 1 of 105)	AluSq2|SINE|Alu	3851	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
49990	chr12	42221701	42221900	+	0	NA	intron (NR_135140, intron 2 of 6)	intron (NR_135140, intron 2 of 6)	16448	NM_005748	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
133163	chr2	112752801	112753000	+	0	NA	intron (NM_001304361, intron 4 of 8)	intron (NM_001304361, intron 4 of 8)	11709	NM_152515	150468		NM_152515	ENSG00000169607	CKAP2L	-	cytoskeleton associated protein 2 like	protein-coding
97943	chr17	45218001	45218280	+	0	NA	intron (NR_147507, intron 2 of 2)	AluJb|SINE|Alu	3625	NR_147507	339192		NR_147507	ENSG00000267121	FMNL1-DT	-	FMNL1 divergent transcript	ncRNA
168637	chr3	149967071	149967430	+	0	NA	intron (NM_053024, intron 2 of 2)	intron (NM_053024, intron 2 of 2)	3645	NM_053024	5217		NM_002628	ENSG00000070087	PFN2	D3S1319E|PFL	profilin 2	protein-coding
90175	chr17	316771	317000	+	0	NA	intron (NM_006987, intron 5 of 9).2	intron (NM_006987, intron 5 of 9).2	-14634	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
63201	chr13	113808351	113809330	+	0	NA	intron (NM_182614, intron 8 of 8)	intron (NM_182614, intron 8 of 8)	-6770	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
54093	chr12	76076771	76077250	+	0	NA	intron (NM_139207, intron 1 of 15)	intron (NM_139207, intron 1 of 15)	7675	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
223112	chr8	143464271	143464850	+	0	NA	intron (NM_015117, intron 9 of 11)	intron (NM_015117, intron 9 of 11)	-33828	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
6552	chr1	28650971	28651300	+	0	NA	Intergenic	AluSx1|SINE|Alu	2535	NR_004407	26824		NR_004407	ENSG00000274978	RNU11	RNU11-1|U11	RNA, U11 small nuclear	snRNA
187999	chr5	149537121	149537580	+	0	NA	intron (NM_001892, intron 2 of 9)	AluSx1|SINE|Alu	13015	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
142671	chr20	5996501	5997380	+	0	NA	3' UTR (NM_032485, exon 19 of 19)	3' UTR (NM_032485, exon 19 of 19)	8881	NR_110101	101929225		NR_110101	ENSG00000278719	MCM8-AS1	-	MCM8 antisense RNA 1	ncRNA
79633	chr16	1150371	1151150	+	0	NA	Intergenic	Intergenic	-2346	NM_021098	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
60458	chr13	41040771	41040930	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	20536	NM_001370330	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
179242	chr4	174282821	174284330	+	0	NA	promoter-TSS (NM_001145314)	promoter-TSS (NM_001145314)	92	NM_012180	26269		NM_012180	ENSG00000164117	FBXO8	DC10|FBS|FBX8	F-box protein 8	protein-coding
85193	chr16	46950051	46950150	+	0	NA	Intergenic	Intergenic	23574	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
191630	chr6	12957271	12957830	+	0	NA	promoter-TSS (NM_001374583)	promoter-TSS (NM_001374583)	243	NM_001322312	221692		NM_030948	ENSG00000112137	PHACTR1	DEE70|EIEE70|RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
174106	chr4	36190821	36191180	+	0	NA	intron (NR_146894, intron 7 of 32)	intron (NR_146894, intron 7 of 32)	52939	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
8267	chr1	39845401	39846450	+	0	NA	intron (NR_132413, intron 1 of 3)	intron (NR_132413, intron 1 of 3)	37579	NM_017646	54802		NM_017646	ENSG00000043514	TRIT1	COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
218862	chr8	60514801	60515200	+	0	NA	Intergenic	Intergenic	-1910	NM_001242644	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
139179	chr2	219213051	219213150	+	0	NA	intron (NM_001349828, intron 11 of 17)	intron (NM_001349828, intron 11 of 17)	5858	NM_005689	10058		NM_005689	ENSG00000115657	ABCB6	ABC|LAN|MTABC3|PRP|umat	ATP binding cassette subfamily B member 6 (LAN blood group)	protein-coding
209177	chr7	75372721	75373380	+	0	NA	Intergenic	FLAM_C|SINE|Alu	13850	NR_040583	54441		NM_018991	ENSG00000290951	STAG3L1	STAG3L1P|STAG3L2|STAG3L3	STAG3 cohesin complex component like 1 (pseudogene)	pseudo
213385	chr7	135972951	135973250	+	0	NA	intron (NM_001128619, intron 1 of 3)	intron (NM_001128619, intron 1 of 3)	4259	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
161739	chr3	44442751	44442850	+	0	NA	3' UTR (NM_001369454, exon 7 of 7)	3' UTR (NM_001369454, exon 7 of 7)	-2902	NM_001375977								
4403	chr1	21174251	21174700	+	0	NA	intron (NM_001198801, intron 2 of 34)	intron (NM_001198801, intron 2 of 34)	2422	NM_001198801	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
33014	chr10	110643451	110644500	+	0	NA	promoter-TSS (NM_001134363)	promoter-TSS (NM_001134363)	-361	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
111473	chr19	3948821	3949550	+	0	NA	Intergenic	AluSz|SINE|Alu	12327	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
50822	chr12	49096671	49096850	+	0	NA	TTS (NM_001352165)	TTS (NM_001352165)	-1959	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
131421	chr2	96286471	96286630	+	0	NA	intron (NM_014014, intron 28 of 44)	intron (NM_014014, intron 28 of 44)	18996	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
152670	chr22	21591051	21591550	+	0	NA	intron (NR_046082, intron 1 of 3)	MER5A|DNA|hAT-Charlie	23586	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
17887	chr1	160082321	160082850	+	0	NA	intron (NM_004983, intron 1 of 2)	intron (NM_004983, intron 1 of 2)	1047	NM_004983	3765		NM_004983	ENSG00000162728	KCNJ9	GIRK3|KIR3.3	potassium inwardly rectifying channel subfamily J member 9	protein-coding
89297	chr16	88709351	88709850	+	0	NA	intron (NM_001318513, intron 2 of 13)	intron (NM_001318513, intron 2 of 13)	3097	NM_001012762	348180		NM_001012759	ENSG00000174177	CTU2	C16orf84|MFRG|NCS2|UPF0432	cytosolic thiouridylase subunit 2	protein-coding
119448	chr19	40409101	40409300	+	0	NA	intron (NM_020956, intron 1 of 5)	AluJo|SINE|Alu	4164	NM_020956	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
50993	chr12	49634771	49635130	+	0	NA	intron (NM_001379037, intron 10 of 22)	intron (NM_001379037, intron 10 of 22)	11389	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
171337	chr3	196039351	196039650	+	0	NA	Intergenic	L1MB7|LINE|L1	42590	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
178978	chr4	163161651	163161950	+	0	NA	intron (NM_138386, intron 2 of 7)	intron (NM_138386, intron 2 of 7)	5090	NM_001128931	92345		NM_138386	ENSG00000145414	NAF1	PFBMFT7	nuclear assembly factor 1 ribonucleoprotein	protein-coding
91225	chr17	3929871	3930050	+	0	NA	intron (NM_174953, intron 18 of 22)	intron (NM_174953, intron 18 of 22)	-13495	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
100332	chr17	59859371	59860030	+	0	NA	3' UTR (NM_016261, exon 9 of 9)	3' UTR (NM_016261, exon 9 of 9)	18434	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
184918	chr5	112920871	112921800	+	0	NA	intron (NM_005669, intron 1 of 4)	CpG	892	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
232154	chr9	134065371	134066550	+	0	NA	intron (NM_007371, intron 1 of 11)	intron (NM_007371, intron 1 of 11)	2066	NM_007371	8019		NM_007371	ENSG00000169925	BRD3	FSHRG2|ORFX|RING3L	bromodomain containing 3	protein-coding
188058	chr5	150001401	150002480	+	0	NA	intron (NM_001366501, intron 1 of 18)	intron (NM_001366501, intron 1 of 18)	1201	NM_014983	22993		NM_014983	ENSG00000113716	HMGXB3	HMGX3|SMF	HMG-box containing 3	protein-coding
18481	chr1	161625751	161625850	+	0	NA	intron (NM_001271037, intron 3 of 3)	intron (NM_001271037, intron 3 of 3)	5247	NM_001271036	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
154647	chr22	36334001	36335400	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-47793	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
47432	chr12	3202901	3203200	+	0	NA	intron (NM_006675, intron 3 of 8)	intron (NM_006675, intron 3 of 8)	125671	NM_006675	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
129693	chr2	70603271	70603430	+	0	NA	Intergenic	L1MD1|LINE|L1	-49524	NM_003236	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
196388	chr6	43273551	43274150	+	0	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	-24410	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
161865	chr3	45871651	45871950	+	0	NA	intron (NM_001276379, intron 2 of 9)	intron (NM_001276379, intron 2 of 9)	-14704	NM_001256369	10803		NM_006641	ENSG00000173585	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	C-C motif chemokine receptor 9	protein-coding
176772	chr4	102449171	102449330	+	0	NA	intron (NR_136202, intron 2 of 4)	AluSg4|SINE|Alu	-52109	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
3653	chr1	16402951	16403050	+	0	NA	intron (NM_001353349, intron 8 of 10)	intron (NM_001353349, intron 8 of 10)	34424	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
120260	chr19	42528201	42528650	+	0	NA	promoter-TSS (NM_001184813)	promoter-TSS (NM_001184813)	56	NM_001024912	634		NM_001712	ENSG00000079385	CEACAM1	BGP|BGP1|BGPI	CEA cell adhesion molecule 1	protein-coding
187124	chr5	140418801	140419330	+	0	NA	intron (NM_020690, intron 1 of 35)	L1MB7|LINE|L1	17232	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
190167	chr5	178147901	178148300	+	0	NA	3' UTR (NM_001288795, exon 11 of 11)	3' UTR (NM_001288795, exon 11 of 11)	5785	NM_017838	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
163312	chr3	50356901	50357630	+	0	NA	intron (NM_007024, intron 1 of 1)	L2c|LINE|L2	2256	NM_007024	11070		NM_007024	ENSG00000126062	TMEM115	PL6	transmembrane protein 115	protein-coding
86759	chr16	67657751	67658800	+	0	NA	TTS (NM_001013838)	TTS (NM_001013838)	1985	NM_001082486	65057		NM_022914	ENSG00000102977	ACD	PIP1|PTOP|TINT1|TPP1	ACD shelterin complex subunit and telomerase recruitment factor	protein-coding
142358	chr20	3766901	3768200	+	0	NA	5' UTR (NM_001258430, exon 1 of 6)	5' UTR (NM_001258430, exon 1 of 6)	203	NM_001258430	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
178034	chr4	139554871	139555700	+	0	NA	intron (NR_131339, intron 1 of 3)	CpG	1484	NM_030648	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
164200	chr3	56862651	56863300	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	53461	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
137259	chr2	193469351	193469650	+	0	NA	Intergenic	LTR77|LTR|ERV1	719655	NR_152587	64002		NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1 prostate-specific transcript	ncRNA
193939	chr6	31657421	31658200	+	0	NA	TTS (NM_021184).4	TTS (NM_021184).4	1916	NM_019101	55937		NM_019101	ENSG00000204444	APOM	G3a|HSPC336|NG20|apo-M	apolipoprotein M	protein-coding
207257	chr7	43889271	43889880	+	0	NA	intron (NM_001077664, intron 1 of 5)	intron (NM_001077664, intron 1 of 5)	17021	NM_001204871	100534592		NM_001204871	ENSG00000270617	URGCP-MRPS24	-	URGCP-MRPS24 readthrough	protein-coding
21676	chr1	206707151	206707250	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	22295	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
24641	chr1	246817921	246818130	+	0	NA	Intergenic	Intergenic	28408	NR_015422	149134		NM_207326		LINC01341	-	long intergenic non-protein coding RNA 1341	ncRNA
47254	chr12	1272051	1272550	+	0	NA	intron (NM_178039, intron 13 of 17)	intron (NM_178039, intron 13 of 17)	-228191	NR_028415	100292680		NR_028415	ENSG00000249628	LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA
178301	chr4	145154601	145154850	+	0	NA	intron (NM_001102653, intron 10 of 20)	MER20|DNA|hAT-Charlie	23433	NM_017493	54726		NM_017493	ENSG00000164164	OTUD4	DUBA6|HIN1|HSHIN1	OTU deubiquitinase 4	protein-coding
234832	chrX	24395751	24396080	+	0	NA	Intergenic	Intergenic	33232	NM_001136234	100130302		NM_001136234	ENSG00000223731	SUPT20HL1	FAM48B1|SPT20L	SUPT20H like 1	protein-coding
228086	chr9	96413051	96414300	+	0	NA	intron (NM_153695, intron 1 of 4)	intron (NM_153695, intron 1 of 4)	4695	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
150482	chr21	42655401	42656080	+	0	NA	intron (NM_001001580, intron 1 of 13)	intron (NM_001001580, intron 1 of 13)	1988	NM_001001580	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
149332	chr21	29051471	29052380	+	0	NA	intron (NM_006447, intron 16 of 17)	intron (NM_006447, intron 16 of 17)	21723	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
227500	chr9	91210871	91211030	+	0	NA	Intergenic	Intergenic	91888	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
107054	chr18	32271771	32271930	+	0	NA	intron (NM_022751, intron 4 of 5)	intron (NM_022751, intron 4 of 5)	81811	NM_005925	4225		NM_005925	ENSG00000141434	MEP1B	-	meprin A subunit beta	protein-coding
87551	chr16	71928671	71929030	+	0	NA	TTS (NM_181536)	TTS (NM_181536)	33319	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
68586	chr14	89447301	89447900	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	30246	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
129794	chr2	71334221	71334480	+	0	NA	intron (NM_014497, intron 1 of 27)	intron (NM_014497, intron 1 of 27)	2568	NM_014497	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
161951	chr3	46212971	46213830	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-5087	NM_001295	1230		NM_001295	ENSG00000163823	CCR1	CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1	C-C motif chemokine receptor 1	protein-coding
108128	chr18	62347251	62347750	+	0	NA	intron (NM_001270950, intron 1 of 7)	intron (NM_001270950, intron 1 of 7)	22190	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
78577	chr15	93029321	93030030	+	0	NA	Intergenic	Intergenic	43481	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
91672	chr17	5541601	5541800	+	0	NA	intron (NM_014922, intron 6 of 15)	intron (NM_014922, intron 6 of 15)	-40694	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
48876	chr12	12471821	12472150	+	0	NA	TTS (NM_001300742).2	TTS (NM_001300742).2	90878	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
221016	chr8	116446551	116446850	+	0	NA	Intergenic	Intergenic	-121641	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
141247	chr2	239720221	239720930	+	0	NA	Intergenic	Intergenic	-42285	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
103803	chr17	79082471	79083430	+	0	NA	intron (NM_001042573, intron 7 of 13)	intron (NM_001042573, intron 7 of 13)	8126	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
141323	chr2	240520421	240520680	+	0	NA	intron (NM_001282771, intron 8 of 17)	CpG-17241	37438	NM_017844	51281		NM_016552	ENSG00000144504	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding
45391	chr11	118321571	118321930	+	0	NA	Intergenic	MER57C1|LTR|ERV1	17020	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
230980	chr9	129480951	129481430	+	0	NA	Intergenic	Arthur1A|DNA|hAT-Tip100	-7470	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
41399	chr11	66012771	66013080	+	0	NA	exon (NM_001323, exon 2 of 3)	exon (NM_001323, exon 2 of 3)	917	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
164081	chr3	55654251	55654550	+	0	NA	intron (NR_132749, intron 16 of 17)	intron (NR_132749, intron 16 of 17)	5069	NR_024615	711		NM_001213	ENSG00000281708	ERC2-IT1	C1orf1|C3orf51|Po42	ERC2 intronic transcript 1	ncRNA
173682	chr4	15233221	15234230	+	0	NA	intron (NR_125911, intron 2 of 5)	intron (NR_125911, intron 2 of 5)	-106263	NM_001135170	114905		NM_031911	ENSG00000163145	C1QTNF7	CTRP7|ZACRP7	C1q and TNF related 7	protein-coding
113215	chr19	8460201	8460400	+	0	NA	intron (NM_001297418, intron 3 of 13)	intron (NM_001297418, intron 3 of 13)	15325	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
153295	chr22	24175021	24175880	+	0	NA	intron (NM_012295, intron 34 of 36)	intron (NM_012295, intron 34 of 36)	-6037	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
161601	chr3	43162401	43163830	+	0	NA	Intergenic	Intergenic	-57036	NM_032806	84892		NM_032806	ENSG00000144647	POMGNT2	AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8	protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)	protein-coding
79354	chr16	624751	625250	+	0	NA	intron (NM_001172664, intron 4 of 6)	intron (NM_001172664, intron 4 of 6)	-5985	NM_053284	117166		NM_053284	ENSG00000127578	WFIKKN1	C16orf12|RJD2|WFDC20A|WFIKKN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1	protein-coding
22474	chr1	221713101	221713700	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	23500	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
204654	chr7	5427621	5427980	+	0	NA	exon (NM_001354886, exon 1 of 1)	exon (NM_001354886, exon 1 of 1)	1127	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
25866	chr10	11246951	11247350	+	0	NA	intron (NM_001326330, intron 3 of 12)	L2|LINE|L2	82120	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
72923	chr15	40398101	40398880	+	0	NA	Intergenic	LTR43B|LTR|ERV1	-7305	NM_002225	3712		NM_002225	ENSG00000128928	IVD	ACAD2|IVDH	isovaleryl-CoA dehydrogenase	protein-coding
41197	chr11	65645451	65645950	+	0	NA	intron (NM_153253, intron 5 of 15)	intron (NM_153253, intron 5 of 15)	-3492	NR_039709	100616284		NR_039709	ENSG00000265874	MIR4489	mir-4489	microRNA 4489	ncRNA
135058	chr2	156431051	156431350	+	0	NA	Intergenic	Intergenic	-4352	NM_001083112	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
151275	chr21	45443801	45444000	+	0	NA	intron (NM_001379500, intron 2 of 41)	intron (NM_001379500, intron 2 of 41)	-11622	NM_030582	80781		NM_030582	ENSG00000182871	COL18A1	GLCC|KNO|KNO1|KS	collagen type XVIII alpha 1 chain	protein-coding
121580	chr19	47279501	47279700	+	0	NA	Intergenic	AluSx1|SINE|Alu	4715	NM_178511	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
494	chr1	1177021	1177680	+	0	NA	intron (NM_001371649, intron 3 of 15)	AluYj4|SINE|Alu	-2331	NM_153254	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
72892	chr15	40333301	40333500	+	0	NA	3' UTR (NM_207380, exon 11 of 11)	3' UTR (NM_207380, exon 11 of 11)	7567	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
134202	chr2	134466101	134466330	+	0	NA	exon (NM_030923, exon 6 of 8)	exon (NM_030923, exon 6 of 8)	212143	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
222700	chr8	141298921	141299650	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	9003	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
22732	chr1	224266751	224267250	+	0	NA	intron (NM_206840, intron 17 of 21)	MER21B|LTR|ERVL	-9890	NR_031574	100313769		NR_031574		MIR320B2	MIR320B-2|MIRN320B2|mir-320b-2	microRNA 320b-2	ncRNA
139146	chr2	219057421	219058830	+	0	NA	TTS (NR_036081)	TTS (NR_036081)	625	NR_036081	100422957		NR_036081	ENSG00000264755	MIR3131	mir-3131	microRNA 3131	ncRNA
160089	chr3	18824651	18824950	+	0	NA	Intergenic	MLT1B-int|LTR|ERVL-MaLR	-323710	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
29955	chr10	73493871	73494280	+	0	NA	intron (NM_001289969, intron 1 of 12)	intron (NM_001289969, intron 1 of 12)	-1677	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
220183	chr8	95214821	95215280	+	0	NA	intron (NR_046232, intron 1 of 2)	MER5A|DNA|hAT-Charlie	1324	NR_046232	619344		NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
74318	chr15	58383821	58384100	+	0	NA	Intergenic	Intergenic	-48031	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
155936	chr22	39664301	39665630	+	0	NA	intron (NM_001003406, intron 20 of 35)	CpG	94212	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
128510	chr2	60549971	60551030	+	0	NA	intron (NM_022893, intron 1 of 3)	CpG	2998	NM_001363864	53335		NM_018014	ENSG00000119866	BCL11A	CTIP1|DILOS|EVI9|HBFQTL5|SMARCM1|ZNF856	BCL11 transcription factor A	protein-coding
133310	chr2	113723621	113723880	+	0	NA	intron (NM_001330315, intron 13 of 16)	intron (NM_001330315, intron 13 of 16)	-2382	NR_039943	100616208		NR_039943	ENSG00000265429	MIR4782	-	microRNA 4782	ncRNA
206845	chr7	37363521	37364000	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	-10092	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
204904	chr7	6117601	6118150	+	0	NA	intron (NM_001365764, intron 3 of 15)	L1ME1|LINE|L1	12926	NM_001365764	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
212012	chr7	114915471	114915630	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-6604	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
192235	chr6	19516521	19516600	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	66739	NR_134615	105374960		NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
115629	chr19	16094451	16094550	+	0	NA	intron (NM_001367836, intron 8 of 8)	AluSz|SINE|Alu	-17389	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
74582	chr15	60556121	60556380	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	36276	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
6140	chr1	27379651	27380330	+	0	NA	3' UTR (NM_207397, exon 5 of 5)	3' UTR (NM_207397, exon 5 of 5)	3343	NM_207397	388611		NM_207397	ENSG00000174950	CD164L2	EAPG6122|UNQ6122	CD164 molecule like 2	protein-coding
206370	chr7	30596071	30596700	+	0	NA	intron (NM_002047, intron 1 of 16)	intron (NM_002047, intron 1 of 16)	1507	NM_002047	2617		NM_002047	ENSG00000106105	GARS1	CMT2D|DSMAV|GARS|GlyRS|HMN5|HMN5A|HMND5|SMAD1|SMAJI	glycyl-tRNA synthetase 1	protein-coding
107440	chr18	46229221	46229630	+	0	NA	intron (NM_001008239, intron 2 of 3)	AluY|SINE|Alu	55391	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
56921	chr12	120439621	120440580	+	0	NA	intron (NM_004373, intron 2 of 2)	MER5A|DNA|hAT-Charlie	1987	NM_004373	1337		NM_004373	ENSG00000111775	COX6A1	CMTRID|COX6A|COX6AL	cytochrome c oxidase subunit 6A1	protein-coding
121669	chr19	47500151	47500900	+	0	NA	intron (NR_038457, intron 1 of 8)	intron (NR_038457, intron 1 of 8)	14538	NM_003827	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
157244	chr22	43345971	43346620	+	0	NA	Intergenic	L2c|LINE|L2	-2923	NM_173050	80274		NM_152514	ENSG00000159307	SCUBE1	-	signal peptide, CUB domain and EGF like domain containing 1	protein-coding
211557	chr7	105536051	105536170	+	0	NA	intron (NR_144478, intron 2 of 13)	AluSz6|SINE|Alu	3909	NM_021930	60561		NM_021930	ENSG00000135249	RINT1	ILFS3|RINT-1	RAD50 interactor 1	protein-coding
39673	chr11	61694821	61695080	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	14559	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
24010	chr1	235257401	235257600	+	0	NA	intron (NM_016374, intron 3 of 23)	AluSx1|SINE|Alu	-67384	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
187670	chr5	143217551	143217950	+	0	NA	intron (NR_146198, intron 22 of 22)	L2b|LINE|L2	25250	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
203233	chr6	168879051	168879150	+	0	NA	Intergenic	Intergenic	85282	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
86279	chr16	58586221	58586530	+	0	NA	intron (NM_206999, intron 7 of 30)	(GAGGG)n|Simple_repeat|Simple_repeat	-26444	NR_002980	677830		NR_002980	ENSG00000281910	SNORA50A	ACA50|SNORA50|SNORA76A	small nucleolar RNA, H/ACA box 50A	snoRNA
63886	chr14	21845401	21845600	+	0	NA	Intergenic	Intergenic	-174483	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
16224	chr1	153930271	153930880	+	0	NA	exon (NM_001367466, exon 27 of 28)	exon (NM_001367466, exon 27 of 28)	-7603	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
236544	chrX	72168621	72169480	+	0	NA	Intergenic	MER51A|LTR|ERV1	-12626	NM_001170747	5303		NM_006223	ENSG00000102309	PIN4	EPVH|PAR14|PAR17|hEPVH|hPar14|hPar17	peptidylprolyl cis/trans isomerase, NIMA-interacting 4	protein-coding
214228	chr7	148855821	148856900	+	0	NA	intron (NM_001203248, intron 1 of 19)	L1MC3|LINE|L1	27125	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
95862	chr17	38845421	38845730	+	0	NA	Intergenic	AluY|SINE|Alu	-4137	NM_001080465	388381		NM_001080465	ENSG00000275489	SPMAP1	C17orf98	sperm microtubule associated protein 1	protein-coding
57653	chr12	122528421	122528680	+	0	NA	intron (NM_014708, intron 1 of 63)	FLAM_C|SINE|Alu	1301	NM_014708	9735		NM_014708	ENSG00000184445	KNTC1	ROD	kinetochore associated 1	protein-coding
92736	chr17	14307651	14307950	+	0	NA	intron (NM_006041, intron 1 of 1)	intron (NM_006041, intron 1 of 1)	4060	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
199403	chr6	116475671	116476250	+	0	NA	Intergenic	AluSc5|SINE|Alu	14585	NM_001010919	441168		NM_001010919	ENSG00000188820	CALHM6	C6orf187|FAM26F|INAM|dJ93H18.5	calcium homeostasis modulator family member 6	protein-coding
229318	chr9	120889351	120889450	+	0	NA	intron (NM_001286840, intron 1 of 14)	AluSx4|SINE|Alu	5496	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
204753	chr7	5590801	5591530	+	0	NA	Intergenic	AluJr|SINE|Alu	-1651	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
144675	chr20	36384001	36384300	+	0	NA	intron (NM_001365621, intron 2 of 12)	intron (NM_001365621, intron 2 of 12)	-77318	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
178807	chr4	153506871	153507230	+	0	NA	intron (NM_015196, intron 3 of 34)	LTR16A|LTR|ERVL	40690	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
52918	chr12	57236721	57237180	+	0	NA	intron (NM_020142, intron 2 of 4)	intron (NM_020142, intron 2 of 4)	3742	NM_020142	56901		NM_020142	ENSG00000185633	NDUFA4L2	COXFA4L2|MISTRH|NUOMS	NDUFA4 mitochondrial complex associated like 2	protein-coding
73877	chr15	50354601	50355950	+	0	NA	promoter-TSS (NM_005254)	promoter-TSS (NM_005254)	-77	NM_005254	2553		NM_002041	ENSG00000104064	GABPB1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4TF1B|GABPB|GABPB-1|GABPB2|NRF2B1|NRF2B2	GA binding protein transcription factor subunit beta 1	protein-coding
123648	chr19	54738401	54739030	+	0	NA	intron (NM_001291696, intron 1 of 6).46	intron (NM_001291696, intron 1 of 6).46	169	NM_001360171	102725023		NM_001360171		LOC102725023	KIR2DS3	killer cell immunoglobulin-like receptor 2DS3-like	protein-coding
47774	chr12	6554021	6554580	+	0	NA	intron (NR_036467, intron 1 of 9)	intron (NR_036467, intron 1 of 9)	1742	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
29437	chr10	70379621	70379950	+	0	NA	intron (NM_018239, intron 1 of 3)	intron (NM_018239, intron 1 of 3)	1781	NM_207119	55222		NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
43576	chr11	83069801	83070250	+	0	NA	intron (NM_014488, intron 1 of 5)	intron (NM_014488, intron 1 of 5)	1437	NM_001286061	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
54475	chr12	92030221	92031400	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	110903	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
54323	chr12	89542671	89543380	+	0	NA	Intergenic	Intergenic	-16763	NM_001199782	100528030		NM_001199781	ENSG00000259075	POC1B-GALNT4	GALNT4|GalNAc-T4	POC1B-GALNT4 readthrough	protein-coding
152999	chr22	23179451	23179800	+	0	NA	promoter-TSS (NM_004327)	promoter-TSS (NM_004327)	-884	NM_004327	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
112919	chr19	7651551	7653000	+	0	NA	Intergenic	Intergenic	15165	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
47615	chr12	6063001	6063480	+	0	NA	intron (NM_000552, intron 12 of 51)	intron (NM_000552, intron 12 of 51)	-23057	NR_145989	109729112		NR_145989		SNORA120	-	small nucleolar RNA, H/ACA box 120	snoRNA
128767	chr2	62210651	62211630	+	0	NA	intron (NM_006577, intron 1 of 1)	AluJb|SINE|Alu	-4381	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
20910	chr1	202172921	202173650	+	0	NA	intron (NR_002930, intron 6 of 21)	AluSx1|SINE|Alu	5234	NR_002930	148713		NR_002930	ENSG00000293457	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase receptor type V, pseudogene	pseudo
215644	chr8	265801	266400	+	0	NA	Intergenic	Intergenic	33644	NM_001042416	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
169118	chr3	155839701	155840150	+	0	NA	intron (NM_001363883, intron 1 of 3)	AluSz|SINE|Alu	14481	NM_001363883	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
178586	chr4	151390151	151390250	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-18976	NM_001348694	729830		NM_001109977	ENSG00000164142	FHIP1A	FAM160A1|FHIP-L	FHF complex subunit HOOK interacting protein 1A	protein-coding
64531	chr14	24435151	24435250	+	0	NA	intron (NM_015299, intron 5 of 7)	intron (NM_015299, intron 5 of 7)	5246	NM_015299	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
113493	chr19	10084051	10084450	+	0	NA	Intergenic	Intergenic	-2067	NM_018381	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
38537	chr11	45904171	45904600	+	0	NA	intron (NM_005456, intron 7 of 11)	intron (NM_005456, intron 7 of 11)	2886	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
153413	chr22	24938801	24939380	+	0	NA	intron (NM_001001663, intron 2 of 3)	MER5A|DNA|hAT-Charlie	7605	NM_001001663	255349		NM_001001663	ENSG00000206069	LHFPL7	TMEM211|bA9F11.1	LHFPL tetraspan subfamily member 7	protein-coding
60810	chr13	45338951	45339330	+	0	NA	intron (NM_003295, intron 4 of 5)	intron (NM_003295, intron 4 of 5)	-1531	NR_002967	677814		NR_002967	ENSG00000199477	SNORA31	ACA31|IIAE10|SNORA31A	small nucleolar RNA, H/ACA box 31	snoRNA
177000	chr4	105426421	105426830	+	0	NA	intron (NM_176866, intron 2 of 7)	L1P2|LINE|L1	47437	NM_176869	27068		NM_006903	ENSG00000138777	PPA2	HSPC124|SCFAI|SCFI|SID6-306	inorganic pyrophosphatase 2	protein-coding
88645	chr16	85641721	85642130	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	28603	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
23986	chr1	235220851	235221230	+	0	NA	intron (NM_016374, intron 14 of 23)	AluSz|SINE|Alu	-30924	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
61483	chr13	52449771	52451300	+	0	NA	promoter-TSS (NM_001282168)	promoter-TSS (NM_001282168)	99	NM_016075	51028		NM_016075	ENSG00000136100	VPS36	C13orf9|CGI-145|EAP45	vacuolar protein sorting 36 homolog	protein-coding
152124	chr22	19947101	19948000	+	0	NA	intron (NM_000754, intron 1 of 5)	LTR13|LTR|ERVK	-3352	NM_001135161	1312		NM_000754	ENSG00000093010	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
225941	chr9	40995401	40996000	+	0	NA	intron (NR_156730, intron 2 of 6)	AluY|SINE|Alu	3439	NR_034006	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
170613	chr3	187002351	187002650	+	0	NA	intron (NM_173216, intron 2 of 7)	intron (NM_173216, intron 2 of 7)	-19355	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
93791	chr17	20450651	20451330	+	0	NA	intron (NM_001042685, intron 10 of 10)	L2a|LINE|L2	14166	NR_144552	339256		NR_144552	ENSG00000291195	NOS2P3	-	nitric oxide synthase 2 pseudogene 3	pseudo
171831	chr4	683151	683250	+	0	NA	intron (NM_032219, intron 8 of 9)	intron (NM_032219, intron 8 of 9)	5278	NM_002477	4636		NM_002477	ENSG00000215375	MYL5	MYLC2	myosin light chain 5	protein-coding
110915	chr19	2772871	2774180	+	0	NA	intron (NM_003021, intron 1 of 11)	CpG	9748	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
150995	chr21	44355421	44355680	+	0	NA	intron (NM_001320350, intron 2 of 32)	L2c|LINE|L2	1949	NM_001320350	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
99471	chr17	50163721	50164150	+	0	NA	Intergenic	Intergenic	-2070	NM_000023	6442		NM_000023	ENSG00000108823	SGCA	50DAG|ADL|DAG2|DMDA2|LGMD2D|LGMDR3|SCARMD1|adhalin	sarcoglycan alpha	protein-coding
27264	chr10	29811971	29812350	+	0	NA	Intergenic	Intergenic	-75224	NM_001323599	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
45021	chr11	117019701	117020800	+	0	NA	intron (NM_001281748, intron 1 of 24)	(AT)n|Simple_repeat|Simple_repeat	78178	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
233280	chr9	137308971	137309230	+	0	NA	intron (NM_017820, intron 20 of 21)	intron (NM_017820, intron 20 of 21)	-6829	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
171516	chr3	196641481	196642300	+	0	NA	intron (NM_198565, intron 1 of 2)	intron (NM_198565, intron 1 of 2)	2196	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
41029	chr11	65443471	65443930	+	0	NA	promoter-TSS (NR_030343)	promoter-TSS (NR_030343)	-758	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
83457	chr16	27346571	27347130	+	0	NA	intron (NM_001257997, intron 5 of 9)	intron (NM_001257997, intron 5 of 9)	32876	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
177281	chr4	109557351	109557730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2706	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
160383	chr3	27943021	27943340	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-109044	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
129288	chr2	68447971	68449500	+	0	NA	Intergenic	Intergenic	18559	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
16712	chr1	155234601	155235080	+	0	NA	3' UTR (NM_001005742, exon 12 of 12)	3' UTR (NM_001005742, exon 12 of 12)	6409	NM_001171812	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
83935	chr16	29094271	29095380	+	0	NA	intron (NR_003369, intron 10 of 16)	AluSz|SINE|Alu	19983	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
125191	chr2	10126121	10126380	+	0	NA	intron (NR_164157, intron 5 of 12)	intron (NR_164157, intron 5 of 12)	3511	NM_001034	6241		NM_001034	ENSG00000171848	RRM2	C2orf48|R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
14436	chr1	144384701	144385830	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-11606	NM_001144032	730262		NM_001144032	ENSG00000271567	PPIAL4E	COAS2|PPIAL4F	peptidylprolyl isomerase A like 4E	protein-coding
164814	chr3	70958371	70958980	+	0	NA	non-coding (NR_146142, exon 20 of 20)	non-coding (NR_146142, exon 20 of 20)	106249	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
184692	chr5	108748351	108749980	+	0	NA	intron (NR_146155, intron 1 of 19)	CpG	217	NM_001308028	2241		NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding
143138	chr20	23902121	23902780	+	0	NA	Intergenic	L1PA3|LINE|L1	-22702	NM_001900	1473		NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
215743	chr8	1824971	1825400	+	0	NA	intron (NM_001308152, intron 1 of 27)	intron (NM_001308152, intron 1 of 27)	1259	NM_001308153	9639		NM_014629	ENSG00000104728	ARHGEF10	GEF10|SNCV	Rho guanine nucleotide exchange factor 10	protein-coding
162085	chr3	46885851	46886450	+	0	NA	intron (NM_001184744, intron 2 of 14)	intron (NM_001184744, intron 2 of 14)	3901	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
123960	chr19	55403601	55404500	+	0	NA	TTS (NM_001363697)	TTS (NM_001363697)	-1393	NR_145781	109623451		NR_145781		SNORD157	-	small nucleolar RNA, C/D box 157	snoRNA
57334	chr12	121698951	121699530	+	0	NA	Intergenic	AluY|SINE|Alu	-13512	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
233001	chr9	137005221	137005550	+	0	NA	Intergenic	AluSx|SINE|Alu	-8817	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
190239	chr5	178483651	178484030	+	0	NA	intron (NM_173465, intron 2 of 28)	intron (NM_173465, intron 2 of 28)	106553	NM_173465	91522		NM_173465	ENSG00000050767	COL23A1	-	collagen type XXIII alpha 1 chain	protein-coding
32159	chr10	101396801	101397630	+	0	NA	intron (NM_003939, intron 1 of 13)	intron (NM_003939, intron 1 of 13)	43050	NM_003939	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
65966	chr14	56194271	56194630	+	0	NA	intron (NM_021255, intron 2 of 5)	intron (NM_021255, intron 2 of 5)	76039	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
7657	chr1	35643301	35643700	+	0	NA	Intergenic	AluSq|SINE|Alu	-1974	NM_002794	5690		NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome 20S subunit beta 2	protein-coding
93982	chr17	21977671	21978180	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-225070	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
206527	chr7	34991171	34991330	+	0	NA	intron (NM_015283, intron 6 of 21)	L2|LINE|L2	46235	NM_001366673	23333		NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like C-mannosyltransferase 1	protein-coding
136529	chr2	177261101	177261600	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	2781	NM_001313900	4780		NM_006164	ENSG00000116044	NFE2L2	HEBP1|IMDDHH|NRF2|Nrf-2	NFE2 like bZIP transcription factor 2	protein-coding
170714	chr3	187986171	187987100	+	0	NA	Intergenic	Intergenic	-10228	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
69855	chr14	99262001	99263650	+	0	NA	intron (NM_022898, intron 1 of 2)	intron (NM_022898, intron 1 of 2)	9372	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
233334	chr9	137438571	137439550	+	0	NA	intron (NM_198585, intron 1 of 8)	intron (NM_198585, intron 1 of 8)	2297	NM_198585	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
228534	chr9	100689751	100689850	+	0	NA	Intergenic	Intergenic	111721	NM_001018116	347273		NM_001018116	ENSG00000170681	CAVIN4	MURC|cavin-4	caveolae associated protein 4	protein-coding
232715	chr9	136586121	136586380	+	0	NA	Intergenic	Intergenic	30931	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
48366	chr12	9433251	9433550	+	0	NA	non-coding (NR_033399, exon 7 of 27)	non-coding (NR_033399, exon 7 of 27)	14772	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
189761	chr5	176632821	176633300	+	0	NA	intron (NM_001375362, intron 1 of 8)	MLT1N2|LTR|ERVL-MaLR	2385	NM_001375362	253314		NM_001099408	ENSG00000175766	EIF4E1B	-	eukaryotic translation initiation factor 4E family member 1B	protein-coding
87237	chr16	69709321	69710200	+	0	NA	3' UTR (NM_001025434, exon 5 of 5)	3' UTR (NM_001025434, exon 5 of 5)	-1085	NR_145753	109617018		NR_145753		SNORD13H	-	small nucleolar RNA, C/D box 13H	snoRNA
191937	chr6	15776571	15776730	+	0	NA	Intergenic	Intergenic	-113592	NM_001271669	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
178782	chr4	153470501	153470830	+	0	NA	intron (NM_015196, intron 2 of 34)	intron (NM_015196, intron 2 of 34)	4305	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
187808	chr5	146519701	146519900	+	0	NA	Intergenic	L1ME1|LINE|L1	-3610	NM_194251	134391		NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|GPCR-2037|PGR7	G protein-coupled receptor 151	protein-coding
198378	chr6	105483551	105483930	+	0	NA	Intergenic	Intergenic	-80658	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
141268	chr2	239953221	239953480	+	0	NA	intron (NR_136158, intron 7 of 10)	MLT1D|LTR|ERVL-MaLR	-10256	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
18790	chr1	167556001	167556500	+	0	NA	Intergenic	Intergenic	-2488	NM_003851	8804		NM_003851	ENSG00000143162	CREG1	CREG	cellular repressor of E1A stimulated genes 1	protein-coding
29089	chr10	68052571	68052930	+	0	NA	intron (NM_001278185, intron 3 of 23)	Looper|DNA|PiggyBac	22533	NM_015601	26091		NM_015601	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
30327	chr10	76139401	76140000	+	0	NA	intron (NM_032024, intron 4 of 5)	intron (NM_032024, intron 4 of 5)	356939	NM_032024	83938		NM_032024	ENSG00000148655	LRMDA	C10orf11|CDA017	leucine rich melanocyte differentiation associated	protein-coding
66411	chr14	61513051	61513480	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	56929	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
173033	chr4	4856801	4857330	+	0	NA	Intergenic	CpG	-2600	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
24147	chr1	235851901	235852100	+	0	NA	TTS (NR_031718)	TTS (NR_031718)	1060	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
23262	chr1	227889301	227889500	+	0	NA	Intergenic	Intergenic	52283	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
109976	chr19	1399471	1399630	+	0	NA	exon (NM_138924, exon 3 of 5)	exon (NM_138924, exon 3 of 5)	1992	NM_138924	2593		NM_000156	ENSG00000130005	GAMT	CCDS2|HEL-S-20|PIG2|TP53I2	guanidinoacetate N-methyltransferase	protein-coding
77693	chr15	85649221	85649750	+	0	NA	intron (NM_007200, intron 10 of 36)	intron (NM_007200, intron 10 of 36)	29535	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
80686	chr16	3045171	3046290	+	0	NA	promoter-TSS (NM_022468)	promoter-TSS (NM_022468)	-831	NM_022468	64386		NM_004142	ENSG00000008516	MMP25	MMP-25|MMP20|MMP20A|MMPL1|MT-MMP 6|MT-MMP6|MT6-MMP|MT6MMP|MTMMP6	matrix metallopeptidase 25	protein-coding
138505	chr2	207164801	207165500	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	798	NM_003709	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
123305	chr19	53569651	53570550	+	0	NA	intron (NM_001317116, intron 3 of 4)	AluSz|SINE|Alu	14793	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
225675	chr9	36472601	36473380	+	0	NA	Intergenic	AluSq2|SINE|Alu	-71792	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
11822	chr1	92845571	92846230	+	0	NA	intron (NM_001252270, intron 3 of 3)	AluJb|SINE|Alu	5181	NR_002444	26782		NR_002444	ENSG00000207523	SNORA66	RNU66|U66	small nucleolar RNA, H/ACA box 66	snoRNA
18765	chr1	167505271	167506350	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	12719	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
189490	chr5	173144101	173145430	+	0	NA	intron (NM_001205, intron 1 of 5)	intron (NM_001205, intron 1 of 5)	234	NM_013978	662		NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2 interacting protein 1	protein-coding
11993	chr1	94925521	94926500	+	0	NA	promoter-TSS (NM_001286056)	promoter-TSS (NM_001286056)	-202	NM_001286056	1266		NM_001839	ENSG00000117519	CNN3	-	calponin 3	protein-coding
119838	chr19	41375101	41375500	+	0	NA	intron (NM_001098825, intron 1 of 3)	AluY|SINE|Alu	-1233	NM_001369862	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
152977	chr22	23128151	23129100	+	0	NA	intron (NM_014433, intron 4 of 6)	intron (NM_014433, intron 4 of 6)	13365	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
171712	chr3	197906001	197907230	+	0	NA	intron (NM_032263, intron 9 of 11)	ERVL-E-int|LTR|ERVL	43310	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
185932	chr5	132915871	132916100	+	0	NA	intron (NM_014423, intron 5 of 20)	AluSx1|SINE|Alu	42317	NM_052971	116842		NM_052971	ENSG00000164406	LEAP2	LEAP-2	liver enriched antimicrobial peptide 2	protein-coding
16516	chr1	154929801	154930080	+	0	NA	intron (NM_006556, intron 2 of 4)	intron (NM_006556, intron 2 of 4)	6779	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
102418	chr17	75630551	75631100	+	0	NA	exon (NM_004259, exon 12 of 20)	exon (NM_004259, exon 12 of 20)	-2609	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
143249	chr20	25054871	25055680	+	0	NA	intron (NM_001252675, intron 1 of 13)	MLT1G|LTR|ERVL-MaLR	2864	NM_032501	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
231803	chr9	132404151	132405080	+	0	NA	intron (NM_007344, intron 1 of 10)	L2b|LINE|L2	2225	NM_007344	7270		NM_007344	ENSG00000125482	TTF1	TTF-1|TTF-I	transcription termination factor 1	protein-coding
47930	chr12	6792671	6793200	+	0	NA	intron (NM_001382705, intron 1 of 7)	intron (NM_001382705, intron 1 of 7)	3407	NM_001195014	920		NM_000616	ENSG00000010610	CD4	CD4mut|IMD79|Leu-3|OKT4D|T4	CD4 molecule	protein-coding
108804	chr18	78515121	78515380	+	0	NA	Intergenic	Intergenic	-465025	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
226076	chr9	62532321	62533500	+	0	NA	intron (NR_147619, intron 1 of 1)	intron (NR_147619, intron 1 of 1)	348	NR_147619	103908604		NR_147619		FAM88F	-	family with sequence similarity 88 member F	ncRNA
112852	chr19	7545821	7546480	+	0	NA	intron (NM_006702, intron 16 of 34)	L2c|LINE|L2	10433	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
62428	chr13	99309351	99309650	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-2101	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
20635	chr1	199243121	199243700	+	0	NA	intron (NR_147896, intron 3 of 3)	intron (NR_147896, intron 3 of 3)	94812	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
2966	chr1	11928851	11929150	+	0	NA	Intergenic	AluJb|SINE|Alu	-2573	NM_138346	90231		NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
140976	chr2	237968321	237969050	+	0	NA	promoter-TSS (NM_001278305)	promoter-TSS (NM_001278305)	-108	NM_001278305	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
136390	chr2	176128571	176129030	+	0	NA	promoter-TSS (NM_001199747)	promoter-TSS (NM_001199747)	-905	NM_019558	3234		NM_019558	ENSG00000175879	HOXD8	HOX4|HOX4E|HOX5.4	homeobox D8	protein-coding
114134	chr19	11211951	11212050	+	0	NA	exon (NM_001367830, exon 37 of 49)	exon (NM_001367830, exon 37 of 49)	8372	NR_134909	105372273		NR_134909	ENSG00000267082	DOCK6-AS1	-	DOCK6 antisense RNA 1	ncRNA
65282	chr14	50022751	50022850	+	0	NA	intron (NR_131171, intron 6 of 8)	intron (NR_131171, intron 6 of 8)	-15280	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
190148	chr5	178112471	178112630	+	0	NA	promoter-TSS (NM_015111)	promoter-TSS (NM_015111)	-982	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
93266	chr17	18036921	18037180	+	0	NA	intron (NM_145691, intron 1 of 7)	AluSq2|SINE|Alu	2118	NM_145691	91647		NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|LP3663|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
97984	chr17	45266451	45266950	+	0	NA	intron (NM_003954, intron 13 of 15)	intron (NM_003954, intron 13 of 15)	-4606	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
235818	chrX	49264521	49264980	+	0	NA	promoter-TSS (NM_014009)	promoter-TSS (NM_014009)	-40	NM_001114377	50943		NM_014009	ENSG00000049768	FOXP3	AIID|DIETER|IPEX|JM2|PIDX|XPID	forkhead box P3	protein-coding
31759	chr10	97869271	97870230	+	0	NA	3' UTR (NM_001010917, exon 5 of 5)	3' UTR (NM_001010917, exon 5 of 5)	6147	NR_162124	113839520		NR_162124		MIR3085	-	microRNA 3085	ncRNA
176549	chr4	98448821	98449300	+	0	NA	Intergenic	Intergenic	187676	NM_001100428	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
35751	chr11	2140001	2140200	+	0	NA	promoter-TSS (NR_133657)	promoter-TSS (NR_133657)	-412	NR_028043	51214		NM_016412	ENSG00000099869	IGF2-AS	IGF2-AS1|IGF2AS|PEG8	IGF2 antisense RNA	ncRNA
73169	chr15	41483121	41484250	+	0	NA	TTS (NM_015138)	TTS (NM_015138)	-10189	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
169220	chr3	157113851	157114150	+	0	NA	intron (NR_034007, intron 1 of 3)	L2c|LINE|L2	9002	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
23591	chr1	229689301	229689500	+	0	NA	Intergenic	Intergenic	63153	NM_014777	9816		NM_014777	ENSG00000135763	URB2	KIAA0133|NET10|NPA2	URB2 ribosome biogenesis homolog	protein-coding
154668	chr22	36355371	36356100	+	0	NA	intron (NM_002473, intron 1 of 40)	MIRb|SINE|MIR	32232	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
53332	chr12	64625301	64626050	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-3070	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52852	chr12	57105751	57106050	+	0	NA	intron (NR_033659, intron 6 of 20)	intron (NR_033659, intron 6 of 20)	4389	NM_001178079	6778		NM_003153	ENSG00000166888	STAT6	D12S1644|HIES6|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6	protein-coding
102685	chr17	76124821	76125300	+	0	NA	Intergenic	L2b|LINE|L2	-15496	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
168930	chr3	152357801	152358200	+	0	NA	intron (NM_001376837, intron 2 of 9)	(GT)n|Simple_repeat|Simple_repeat	-17010	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
8153	chr1	39408421	39409700	+	0	NA	promoter-TSS (NM_015038)	promoter-TSS (NM_015038)	-13	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
149717	chr21	34088101	34088630	+	0	NA	intron (NM_032476, intron 1 of 2)	intron (NM_032476, intron 1 of 2)	14787	NM_006933	6526		NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
21132	chr1	203654501	203654700	+	0	NA	intron (NM_001365784, intron 1 of 20)	Tigger1|DNA|TcMar-Tigger	26663	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
179126	chr4	168995501	168995740	+	0	NA	intron (NM_032783, intron 4 of 4)	intron (NM_032783, intron 4 of 4)	14635	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
119467	chr19	40433651	40434630	+	0	NA	Intergenic	CpG	-8148	NM_013376	29950		NM_013376	ENSG00000197019	SERTAD1	SEI1|TRIP-Br1|TRIPBR1	SERTA domain containing 1	protein-coding
146664	chr20	50482351	50482650	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-27821	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138164	chr2	202628001	202628200	+	0	NA	Intergenic	L2a|LINE|L2	-6869	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
22536	chr1	222310771	222311070	+	0	NA	Intergenic	Intergenic	237184	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
201163	chr6	142938521	142938980	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	6426	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
33638	chr10	119664971	119665300	+	0	NA	intron (NM_004281, intron 1 of 3)	AluSq2|SINE|Alu	13755	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
118006	chr19	34121021	34121330	+	0	NA	Intergenic	L1MEf|LINE|L1	-51329	NR_169265	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
143027	chr20	21102271	21103700	+	0	NA	intron (NR_147212, intron 1 of 2)	CpG	3373	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
64777	chr14	34693001	34693400	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	20617	NM_021914	1073		NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding
42797	chr11	72790071	72790430	+	0	NA	intron (NM_006645, intron 1 of 6)	intron (NM_006645, intron 1 of 6)	3455	NM_006645	10809		NM_006645	ENSG00000214530	STARD10	CGI-52|NY-CO-28|PCTP2|SDCCAG28	StAR related lipid transfer domain containing 10	protein-coding
210061	chr7	95690501	95690700	+	0	NA	Intergenic	Intergenic	-81906	NM_001278422	1780		NM_004411	ENSG00000158560	DYNC1I1	DNCI1|DNCIC1	dynein cytoplasmic 1 intermediate chain 1	protein-coding
100560	chr17	62653271	62654030	+	0	NA	intron (NM_006039, intron 1 of 29)	intron (NM_006039, intron 1 of 29)	25980	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
38771	chr11	47173821	47174080	+	0	NA	intron (NM_001242832, intron 4 of 14)	intron (NM_001242832, intron 4 of 14)	2929	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
117580	chr19	21505351	21506650	+	0	NA	non-coding (NR_144524, exon 1 of 2)	non-coding (NR_144524, exon 1 of 2)	398	NM_001346913	353088		NM_001001415	ENSG00000197013	ZNF429	-	zinc finger protein 429	protein-coding
207081	chr7	39968221	39968680	+	0	NA	intron (NM_003718, intron 1 of 13)	FLAM_A|SINE|Alu	18090	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
227557	chr9	92114501	92115930	+	0	NA	intron (NM_001368273, intron 1 of 15)	CpG	198	NM_006415	10558		NM_006415	ENSG00000090054	SPTLC1	ALS27|HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI	serine palmitoyltransferase long chain base subunit 1	protein-coding
26240	chr10	14600201	14601080	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	3761	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
19146	chr1	171557521	171558180	+	0	NA	exon (NM_015172, exon 19 of 34)	exon (NM_015172, exon 19 of 34)	-61913	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
114616	chr19	12974101	12974300	+	0	NA	3' UTR (NM_152654, exon 2 of 2)	3' UTR (NM_152654, exon 2 of 2)	4582	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
154696	chr22	36391071	36391630	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3383	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
214110	chr7	143901551	143902750	+	0	NA	promoter-TSS (NM_001206938).2	promoter-TSS (NM_001206938).2	26	NM_001206938	9747		NM_014719	ENSG00000198420	TCAF1	FAM115A|GATD9A	TRPM8 channel associated factor 1	protein-coding
230687	chr9	128727831	128728350	+	0	NA	intron (NR_046240, intron 1 of 1)	AluJo|SINE|Alu	3628	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
54116	chr12	76445551	76445850	+	0	NA	intron (NM_001003712, intron 3 of 22)	L1M5|LINE|L1	-22415	NM_001319655	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
100689	chr17	63824401	63824880	+	0	NA	exon (NM_017647, exon 10 of 21)	exon (NM_017647, exon 10 of 21)	-2791	NM_002805	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
78120	chr15	90342501	90342900	+	0	NA	Intergenic	Intergenic	6747	NR_028287	23766		NM_032568		GABARAPL3	ATG8D	GABA type A receptor associated protein like 3 (pseudogene)	pseudo
117669	chr19	24048001	24048650	+	0	NA	intron (NM_001278663, intron 2 of 2)	intron (NM_001278663, intron 2 of 2)	14876	NM_001278663	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
161528	chr3	42607621	42608280	+	0	NA	intron (NM_001349126, intron 2 of 18)	MER21C|LTR|ERVL	-6872	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
74786	chr15	63274351	63275000	+	0	NA	Intergenic	L2|LINE|L2	-2875	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
89464	chr16	89052301	89053130	+	0	NA	Intergenic	CpG	-41137	NR_147928	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
164257	chr3	57448951	57449050	+	0	NA	intron (NM_001366028, intron 25 of 73)	LTR12C|LTR|ERV1	95344	NM_001366028	201625		NM_178504	ENSG00000174844	DNAH12	DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19	dynein axonemal heavy chain 12	protein-coding
207200	chr7	43636251	43636530	+	0	NA	intron (NR_163914, intron 7 of 8)	intron (NR_163914, intron 7 of 8)	53282	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
173339	chr4	7738451	7738780	+	0	NA	intron (NM_020777, intron 26 of 26)	intron (NM_020777, intron 26 of 26)	-15475	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
92532	chr17	8934601	8935950	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	-22758	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
100717	chr17	63869771	63869950	+	0	NA	Intergenic	Intergenic	3817	NM_020991	1443		NM_020991	ENSG00000213218	CSH2	CS-2|CSB|GHB1|PL|hCS-B	chorionic somatomammotropin hormone 2	protein-coding
147487	chr20	59151801	59153200	+	0	NA	intron (NM_001384354, intron 2 of 7)	intron (NM_001384354, intron 2 of 7)	-11321	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
230719	chr9	128809271	128809600	+	0	NA	3' UTR (NM_001286772, exon 10 of 10)	3' UTR (NM_001286772, exon 10 of 10)	-9065	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
59024	chr13	20230701	20231550	+	0	NA	5' UTR (NM_006783, exon 1 of 3)	5' UTR (NM_006783, exon 1 of 3)	108	NM_006783	10804		NM_006783	ENSG00000121742	GJB6	CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2	gap junction protein beta 6	protein-coding
91136	chr17	3737551	3738110	+	0	NA	intron (NM_002208, intron 20 of 30)	intron (NM_002208, intron 20 of 30)	13927	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
203421	chr7	267021	267700	+	0	NA	Intergenic	Intergenic	-22810	NM_001374838	116033993		NM_001374838	ENSG00000248767	FOXL3	-	forkhead box L3	protein-coding
84401	chr16	30336921	30337300	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1736	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
154940	chr22	37231201	37232980	+	0	NA	intron (NM_002872, intron 3 of 6)	intron (NM_002872, intron 3 of 6)	12179	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
84895	chr16	31201601	31203280	+	0	NA	exon (NM_013258, exon 1 of 3)	exon (NM_013258, exon 1 of 3)	320	NM_013258	29108		NM_013258	ENSG00000103490	PYCARD	ASC|CARD5|TMS|TMS-1|TMS1	PYD and CARD domain containing	protein-coding
85016	chr16	31568901	31569430	+	0	NA	non-coding (NR_027011, exon 1 of 1)	non-coding (NR_027011, exon 1 of 1)	359	NR_027011	440359		NR_027011		YBX3P1	CSDAP1	Y-box binding protein 3 pseudogene 1	pseudo
71239	chr14	105183801	105184000	+	0	NA	Intergenic	L1MB5|LINE|L1	-2577	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
75231	chr15	64861471	64861830	+	0	NA	intron (NM_001195059, intron 4 of 4)	intron (NM_001195059, intron 4 of 4)	19735	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
132181	chr2	101818671	101819200	+	0	NA	intron (NM_001384572, intron 2 of 29)	intron (NM_001384572, intron 2 of 29)	120670	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
146763	chr20	50851971	50852350	+	0	NA	intron (NM_198799, intron 4 of 4)	MIRb|SINE|MIR	57099	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
156493	chr22	41283051	41283380	+	0	NA	intron (NM_001317930, intron 1 of 15)	L2a|LINE|L2	2972	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
198901	chr6	109629651	109629750	+	0	NA	intron (NM_001145128, intron 12 of 40)	AluY|SINE|Alu	61512	NR_138057	221264		NM_145025	ENSG00000155085	AK9	AK 9|AKD1|AKD2|C6orf199|C6orf224|SPGF89|dJ70A9.1	adenylate kinase 9	protein-coding
163737	chr3	52331101	52331300	+	0	NA	exon (NM_015512, exon 7 of 78)	exon (NM_015512, exon 7 of 78)	14881	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
38948	chr11	47516271	47516430	+	0	NA	intron (NM_001376409, intron 1 of 15)	intron (NM_001376409, intron 1 of 15)	7481	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
116413	chr19	18002421	18002880	+	0	NA	intron (NM_001025604, intron 1 of 7)	intron (NM_001025604, intron 1 of 7)	1526	NM_001025604	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
149560	chr21	33213271	33213650	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-16435	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
141296	chr2	240430551	240430850	+	0	NA	Intergenic	Intergenic	-4963	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
176988	chr4	105144451	105144750	+	0	NA	Intergenic	MIRb|SINE|MIR	-1275	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
159561	chr3	14882201	14883030	+	0	NA	intron (NM_152536, intron 4 of 19)	AluSx1|SINE|Alu	63653	NM_001320276	152273		NM_152536	ENSG00000154783	FGD5	ZFYVE23	FYVE, RhoGEF and PH domain containing 5	protein-coding
17688	chr1	158014171	158014330	+	0	NA	intron (NM_001286349, intron 1 of 12)	GA-rich|Low_complexity|Low_complexity	-11300	NR_145471	100505785		NR_145471		KIRREL1-IT1	KIRREL-IT1	KIRREL1 intronic transcript 1	ncRNA
82585	chr16	18792051	18792350	+	0	NA	3' UTR (NM_001313858, exon 6 of 6)	3' UTR (NM_001313858, exon 6 of 6)	-1866	NM_001030009	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
84860	chr16	31144571	31144730	+	0	NA	intron (NM_173502, intron 6 of 14)	AluSz6|SINE|Alu	5416	NM_173502	146547		NM_173502	ENSG00000178226	PRSS36	-	serine protease 36	protein-coding
162553	chr3	48647121	48647730	+	0	NA	intron (NM_001407, intron 20 of 34)	intron (NM_001407, intron 20 of 34)	-3145	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
49492	chr12	25253121	25254130	+	0	NA	Intergenic	Intergenic	-2696	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
728	chr1	1441771	1442080	+	0	NA	3' UTR (NM_199121, exon 3 of 3)	3' UTR (NM_199121, exon 3 of 3)	6235	NM_022834	64856		NM_022834	ENSG00000179403	VWA1	HMNMYO|HMNR7|WARP	von Willebrand factor A domain containing 1	protein-coding
83610	chr16	28196401	28197000	+	0	NA	intron (NM_015171, intron 1 of 23)	MSTB1|LTR|ERVL-MaLR	15265	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
144941	chr20	37033871	37034030	+	0	NA	intron (NM_183404, intron 15 of 20)	AluJo|SINE|Alu	62047	NM_183404	5933		NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding
43772	chr11	86248671	86249130	+	0	NA	intron (NM_001330334, intron 1 of 9)	AluJb|SINE|Alu	4147	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
234442	chrX	16888751	16889700	+	0	NA	Intergenic	Intergenic	-18863	NM_002893	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
71988	chr15	25811471	25812230	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	36975	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
149689	chr21	33937891	33939380	+	0	NA	TTS (NR_134559)	TTS (NR_134559)	7421	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
198651	chr6	107814751	107815430	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	9223	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
28356	chr10	47081251	47081550	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	169678	NM_001042358	26095		NM_015605	ENSG00000204179	PTPN20	CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1	protein tyrosine phosphatase non-receptor type 20	protein-coding
151484	chr21	46287751	46287850	+	0	NA	intron (NM_001314022, intron 2 of 3)	AluSq2|SINE|Alu	1458	NM_001314022	54059		NM_058181	ENSG00000182362	YBEY	C21orf57	ybeY metalloendoribonuclease	protein-coding
27497	chr10	32263201	32263700	+	0	NA	Intergenic	LTR72|LTR|ERV1	83708	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
15265	chr1	149644771	149645530	+	0	NA	intron (NR_111950, intron 1 of 8)	MER51D|LTR|ERV1	38138	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
7422	chr1	32959771	32960000	+	0	NA	intron (NM_001127361, intron 1 of 8)	AluY|SINE|Alu	4924	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
226192	chr9	65225151	65225330	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	59969	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
101280	chr17	66392051	66392500	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	24579	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
2791	chr1	10905901	10906580	+	0	NA	Intergenic	Intergenic	60447	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
187977	chr5	149489121	149489450	+	0	NA	Intergenic	Intergenic	58639	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
209042	chr7	74658201	74659100	+	0	NA	intron (NM_001163636, intron 1 of 33)	CpG	932	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
178850	chr4	153790871	153791580	+	0	NA	Intergenic	CpG	-2142	NM_003013	6423		NM_003013	ENSG00000145423	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled related protein 2	protein-coding
176576	chr4	98662871	98663830	+	0	NA	non-coding (NR_148380, exon 3 of 3)	non-coding (NR_148380, exon 3 of 3)	4448	NR_148380	105377342		NR_148380		TSPAN5-DT	-	TSPAN5 divergent transcript	ncRNA
70953	chr14	104680321	104680580	+	0	NA	Intergenic	Intergenic	-2701	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	mir-4710	microRNA 4710	ncRNA
185164	chr5	119339451	119339630	+	0	NA	intron (NM_001286814, intron 1 of 1)	intron (NM_001286814, intron 1 of 1)	6365	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
39505	chr11	61048501	61049100	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-45163	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
34997	chr11	526771	527950	+	0	NA	Intergenic	L1MB1|LINE|L1	8207	NM_176795	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
3441	chr1	15885871	15886750	+	0	NA	intron (NM_015001, intron 3 of 14)	intron (NM_015001, intron 3 of 14)	-38163	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
43434	chr11	77636771	77638150	+	0	NA	intron (NM_001311199, intron 1 of 6)	CpG	334	NM_001311200	1207		NM_001293	ENSG00000074201	CLNS1A	CLCI|CLNS1B|ICln	chloride nucleotide-sensitive channel 1A	protein-coding
140949	chr2	237750471	237750630	+	0	NA	intron (NM_001137551, intron 4 of 11)	AluSq2|SINE|Alu	-48229	NM_001080504	375316		NM_198852	ENSG00000177483	RBM44	-	RNA binding motif protein 44	protein-coding
68991	chr14	91482371	91482530	+	0	NA	intron (NR_158976, intron 4 of 16)	intron (NR_158976, intron 4 of 16)	27860	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
15290	chr1	149835071	149835300	+	0	NA	TTS (NR_168446)	TTS (NR_168446)	2528	NR_168446	554313		NM_001034077	ENSG00000270276	H4C15	H4-16|H4/o|H4C1|H4C11|H4C12|H4C13|H4C14|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST2H4B	H4 clustered histone 15	protein-coding
226049	chr9	60631251	60631430	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-283067	NM_001113541	727905		NM_001113541	ENSG00000276581	SPATA31A5	FAM75A5	SPATA31 subfamily A member 5	protein-coding
166143	chr3	111548951	111549580	+	0	NA	intron (NR_134917, intron 2 of 14)	L2a|LINE|L2	7068	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
152808	chr22	21852601	21853000	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSz|SINE|Alu	14845	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
114962	chr19	14000951	14001600	+	0	NA	intron (NM_002918, intron 1 of 20)	intron (NM_002918, intron 1 of 20)	5045	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
43252	chr11	75529701	75530550	+	0	NA	Intergenic	Intergenic	-4184	NM_030792	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
234711	chrX	20527501	20527780	+	0	NA	Intergenic	Intergenic	-260731	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
143276	chr20	25237501	25237980	+	0	NA	Intergenic	Intergenic	-10345	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
108210	chr18	63151821	63153250	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	167234	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
139197	chr2	219251251	219251350	+	0	NA	TTS (NM_001330213)	TTS (NM_001330213)	-1943	NM_001355221	80086		NM_001355221	ENSG00000243910	TUBA4B	TUBA4	tubulin alpha 4b	protein-coding
158414	chr22	50534321	50535000	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-2162	NM_001014440	440836		NM_001014440	ENSG00000177989	CIMAP1B	FAP123|ODF3B|ODF3L3	ciliary microtubule associated protein 1B	protein-coding
118494	chr19	35940051	35940900	+	0	NA	exon (NM_024509, exon 2 of 3)	exon (NM_024509, exon 2 of 3)	4101	NM_024509	79414		NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
209199	chr7	75421051	75421350	+	0	NA	intron (NM_001099415, intron 13 of 14)	AluSz|SINE|Alu	10878	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
93480	chr17	18919851	18920150	+	0	NA	intron (NM_001353102, intron 9 of 11)	intron (NM_001353102, intron 9 of 11)	-30676	NM_001282417	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
136738	chr2	181262951	181263050	+	0	NA	intron (NR_130784, intron 3 of 4)	MLT1G|LTR|ERVL-MaLR	42652	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
167753	chr3	132399301	132399530	+	0	NA	Intergenic	Intergenic	-18087	NM_001329126	23317		NM_015268	ENSG00000138246	DNAJC13	PARK21|RME8	DnaJ heat shock protein family (Hsp40) member C13	protein-coding
38251	chr11	36507771	36508380	+	0	NA	intron (NM_145803, intron 1 of 7)	AluJb|SINE|Alu	2197	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
112780	chr19	7473171	7474050	+	0	NA	Intergenic	AluY|SINE|Alu	15425	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
56174	chr12	111423501	111423700	+	0	NA	intron (NM_005475, intron 2 of 7)	AluY|SINE|Alu	-11262	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
101334	chr17	66727921	66728200	+	0	NA	intron (NM_002737, intron 8 of 16)	intron (NM_002737, intron 8 of 16)	-59012	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
110103	chr19	1547571	1548130	+	0	NA	Intergenic	Intergenic	20208	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
167904	chr3	136157271	136157430	+	0	NA	intron (NM_018133, intron 1 of 1)	AluSx|SINE|Alu	37118	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
74053	chr15	52503871	52504280	+	0	NA	intron (NM_000259, intron 1 of 40)	(T)n|Simple_repeat|Simple_repeat	24805	NM_001382348	4644		NM_000259	ENSG00000197535	MYO5A	GS1|MYH12|MYO5|MYR12	myosin VA	protein-coding
98352	chr17	46340851	46341730	+	0	NA	intron (NM_001039083, intron 3 of 3).5	intron (NM_001039083, intron 3 of 3).5	20476	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
238333	chrX	149537751	149538050	+	0	NA	intron (NR_027455, intron 3 of 9)	intron (NR_027455, intron 3 of 9)	1852	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
223533	chr8	144126401	144126950	+	0	NA	Intergenic	Intergenic	-11099	NM_016458	51236		NM_016458	ENSG00000235173	HGH1	BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B	HGH1 homolog	protein-coding
64257	chr14	23183501	23184150	+	0	NA	promoter-TSS (NM_012244)	promoter-TSS (NM_012244)	-165	NM_012244	23428		NM_012244	ENSG00000092068	SLC7A8	LAT2|LPI-PC1	solute carrier family 7 member 8	protein-coding
68782	chr14	91172951	91173580	+	0	NA	intron (NM_001286470, intron 8 of 16)	intron (NM_001286470, intron 8 of 16)	46839	NR_003709	100124539		NR_003709	ENSG00000221102	SNORA11B	-	small nucleolar RNA, H/ACA box 11B	snoRNA
76685	chr15	75733721	75734550	+	0	NA	intron (NR_024595, intron 3 of 4)	intron (NR_024595, intron 3 of 4)	5942	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
30097	chr10	73955951	73957010	+	0	NA	Intergenic	MIRb|SINE|MIR	-33703	NR_160938	414236		NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 putative open reading frame 55	ncRNA
104681	chr17	81505151	81506450	+	0	NA	Intergenic	AluSg|SINE|Alu	6999	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
155705	chr22	39096051	39096380	+	0	NA	Intergenic	MIRc|SINE|MIR	-1009	NM_001166004	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
211500	chr7	105248751	105249150	+	0	NA	intron (NM_001350741, intron 2 of 16)	intron (NM_001350741, intron 2 of 16)	20127	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
109949	chr19	1364201	1364650	+	0	NA	intron (NR_168277, intron 7 of 14)	intron (NR_168277, intron 7 of 14)	7006	NR_163149	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
101001	chr17	64655151	64655980	+	0	NA	intron (NM_022739, intron 1 of 18)	L1M5|LINE|L1	6742	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
60545	chr13	41468801	41469800	+	0	NA	intron (NM_014059, intron 4 of 4)	(AAG)n|Simple_repeat|Simple_repeat	11750	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
206435	chr7	32846401	32846990	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	20393	NR_132360	102724668		NR_132360		DPY19L1P2	THC1072510	DPY19L1 pseudogene 2	pseudo
4965	chr1	24149601	24149930	+	0	NA	Intergenic	Intergenic	-6625	NM_021258	58985		NM_021258	ENSG00000142677	IL22RA1	CRF2-9|IL22R|IL22R1	interleukin 22 receptor subunit alpha 1	protein-coding
167654	chr3	129650301	129650530	+	0	NA	3' UTR (NM_001128224, exon 6 of 6)	3' UTR (NM_001128224, exon 6 of 6)	38317	NM_015008	23023		NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
107830	chr18	54221121	54221580	+	0	NA	TTS (NR_002970)	TTS (NR_002970)	1062	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
126942	chr2	33494301	33494500	+	0	NA	intron (NM_001349980, intron 2 of 18)	intron (NM_001349980, intron 2 of 18)	17751	NM_001349981	25780		NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
99300	chr17	49795171	49795780	+	0	NA	intron (NM_001199156, intron 2 of 12)	intron (NM_001199156, intron 2 of 12)	6794	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
214069	chr7	143396571	143396730	+	0	NA	intron (NM_005232, intron 10 of 17)	intron (NM_005232, intron 10 of 17)	-11163	NR_033897	285965		NR_033897	ENSG00000229153	EPHA1-AS1	-	EPHA1 antisense RNA 1	ncRNA
217016	chr8	23209551	23209650	+	0	NA	intron (NM_003844, intron 2 of 9)	THE1B-int|LTR|ERVL-MaLR	15502	NM_003844	8797		NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
222757	chr8	141429751	141430550	+	0	NA	intron (NM_032611, intron 5 of 5).2	CpG	8762	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
170155	chr3	183540771	183541200	+	0	NA	intron (NM_130446, intron 1 of 6)	intron (NM_130446, intron 1 of 6)	-7750	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
55597	chr12	106753401	106754130	+	0	NA	intron (NM_213594, intron 17 of 17)	intron (NM_213594, intron 17 of 17)	-20917	NM_001351363	55188		NM_018157	ENSG00000111785	RIC8B	RIC8|hSyn	RIC8 guanine nucleotide exchange factor B	protein-coding
83041	chr16	22318451	22319530	+	0	NA	intron (NM_018119, intron 13 of 20).2	AluSq|SINE|Alu	21581	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
128748	chr2	62054901	62055100	+	0	NA	intron (NM_001371765, intron 2 of 2)	Charlie3|DNA|hAT-Charlie	-141115	NM_006577	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
195025	chr6	35472101	35473130	+	0	NA	TTS (NM_003214)	TTS (NM_003214)	2107	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
73367	chr15	42490271	42491850	+	0	NA	promoter-TSS (NM_001381997)	promoter-TSS (NM_001381997)	81	NM_001381998	64397		NM_022473	ENSG00000103994	ZNF106	SH3BP3|ZFP106|ZNF474	zinc finger protein 106	protein-coding
126024	chr2	25340451	25340670	+	0	NA	intron (NR_135490, intron 1 of 23)	CpG	1365	NM_022552	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
194423	chr6	33082521	33083000	+	0	NA	intron (NM_002121, intron 2 of 5).5	intron (NM_002121, intron 2 of 5).5	-2012	NM_001242525	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
213559	chr7	139115701	139115900	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-6080	NM_020119	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
59394	chr13	25017971	25018930	+	0	NA	Intergenic	CpG	-49981	NR_026730	646405		NM_001126062		TPTE2P1	-	TPTE2 pseudogene 1	pseudo
140588	chr2	233378171	233378530	+	0	NA	intron (NM_152879, intron 1 of 29)	AluSx1|SINE|Alu	-9804	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
121856	chr19	48250971	48251730	+	0	NA	intron (NM_001351783, intron 1 of 12)	MER65-int|LTR|ERV1	-1503	NM_001184901	22900		NM_014959	ENSG00000105483	CARD8	CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN	caspase recruitment domain family member 8	protein-coding
137883	chr2	200845701	200846280	+	0	NA	Intergenic	Intergenic	18571	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
219208	chr8	66663671	66664230	+	0	NA	intron (NM_025054, intron 1 of 2)	intron (NM_025054, intron 1 of 2)	3281	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
108037	chr18	59137951	59138250	+	0	NA	Intergenic	L2a|LINE|L2	-1784	NM_001307941	90701		NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
123667	chr19	54903921	54904780	+	0	NA	Intergenic	L1PA16|LINE|L1	-1798	NM_001242357	9437		NM_004829	ENSG00000189430	NCR1	CD335|LY94|NK-p46|NKP46	natural cytotoxicity triggering receptor 1	protein-coding
238039	chrX	135342501	135343190	+	0	NA	5' UTR (NM_007131, exon 1 of 7)	5' UTR (NM_007131, exon 1 of 7)	1264	NR_110381	7626		NM_007131	ENSG00000186376	ZNF75D	D8C6|ZKSCAN24|ZNF75|ZNF82|ZSCAN28	zinc finger protein 75D	protein-coding
201310	chr6	144358071	144358430	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	-47405	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
20412	chr1	198191821	198192080	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	34952	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
95372	chr17	35874571	35874730	+	0	NA	intron (NM_002985, intron 2 of 2).2	AluSq|SINE|Alu	5710	NM_001278736	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
214363	chr7	149621671	149622500	+	0	NA	intron (NR_027789, intron 1 of 8)	intron (NR_027789, intron 1 of 8)	2705	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
84529	chr16	30522651	30522750	+	0	NA	3' UTR (NM_001114380, exon 29 of 29)	3' UTR (NM_001114380, exon 29 of 29)	3866	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
180486	chr5	14109201	14109400	+	0	NA	Intergenic	Intergenic	-34042	NM_007118	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
35271	chr11	918851	920080	+	0	NA	Intergenic	Intergenic	-4407	NM_001142675	66005		NM_023947	ENSG00000177830	CHID1	GL008|SI-CLP|SICLP	chitinase domain containing 1	protein-coding
14574	chr1	145162451	145162550	+	0	NA	Intergenic	Intergenic	5107	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
31279	chr10	92300271	92300430	+	0	NA	intron (NM_017824, intron 1 of 5)	AluJb|SINE|Alu	9183	NM_017824	54708		NM_017824	ENSG00000198060	MARCHF5	MARCH-V|MARCH5|MITOL|RNF153	membrane associated ring-CH-type finger 5	protein-coding
95901	chr17	38895571	38895930	+	0	NA	intron (NM_006148, intron 3 of 6)	intron (NM_006148, intron 3 of 6)	-19229	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
207814	chr7	50310651	50311300	+	0	NA	intron (NM_001291837, intron 1 of 6)	intron (NM_001291837, intron 1 of 6)	2275	NM_001291837	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
91909	chr17	7308501	7310150	+	0	NA	intron (NM_001143762, intron 1 of 5)	intron (NM_001143762, intron 1 of 5)	950	NM_001143762	1984		NM_001970	ENSG00000132507	EIF5A	EIF-5A|EIF5A1|FABAS|eIF-4D|eIF5AI	eukaryotic translation initiation factor 5A	protein-coding
62646	chr13	101624221	101625950	+	0	NA	intron (NM_004791, intron 7 of 10)	Eulor2B|DNA?|DNA?	135133	NM_001271756	9358		NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
41691	chr11	66632171	66632780	+	0	NA	intron (NM_001198846, intron 1 of 1)	intron (NM_001198846, intron 1 of 1)	-6142	NM_001198843	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
208380	chr7	66659101	66659300	+	0	NA	intron (NM_001367722, intron 1 of 7)	AluSg4|SINE|Alu	4633	NM_001367727	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
45699	chr11	119073351	119073650	+	0	NA	non-coding (NR_165452, exon 6 of 16).2	non-coding (NR_165452, exon 6 of 16).2	5487	NM_001378221	55823		NM_021729	ENSG00000160695	VPS11	END1|HLD12|HLD12; DYT32|PEP5|RNF108|hVPS11	VPS11 core subunit of CORVET and HOPS complexes	protein-coding
185505	chr5	131319801	131320580	+	0	NA	intron (NM_001375633, intron 2 of 5)	AluSz|SINE|Alu	56137	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
156215	chr22	40333971	40334130	+	0	NA	3' UTR (NM_001162501, exon 23 of 23)	3' UTR (NM_001162501, exon 23 of 23)	-12450	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
116295	chr19	17755521	17756350	+	0	NA	intron (NR_169234, intron 4 of 28)	intron (NR_169234, intron 4 of 28)	1726	NR_169258	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
172159	chr4	1216051	1216150	+	0	NA	exon (NM_001377190, exon 6 of 10)	exon (NM_001377190, exon 6 of 10)	5980	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
138932	chr2	218230851	218231530	+	0	NA	intron (NM_152862, intron 4 of 10)	intron (NM_152862, intron 4 of 10)	13793	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
109588	chr19	914671	915030	+	0	NA	Intergenic	AluY|SINE|Alu	-1631	NM_138774	91300		NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
139222	chr2	219292751	219293250	+	0	NA	intron (NM_001199763, intron 18 of 21)	MER1B|DNA|hAT-Charlie	1200	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
28198	chr10	44932571	44933330	+	0	NA	intron (NM_001345926, intron 2 of 3)	intron (NM_001345926, intron 2 of 3)	21613	NM_001123376	643236		NM_001123376	ENSG00000187783	TMEM72	C10orf127|KSP37	transmembrane protein 72	protein-coding
237515	chrX	120085551	120085950	+	0	NA	intron (NR_131238, intron 1 of 4)	HERV15-int|LTR|ERV1	-8060	NM_032498	84528		NM_032498	ENSG00000131721	RHOXF2	CT107|PEPP-2|PEPP2|THG1	Rhox homeobox family member 2	protein-coding
142945	chr20	18792801	18793000	+	0	NA	intron (NR_026883, intron 2 of 3)	(TATC)n|Simple_repeat|Simple_repeat	1082	NR_026884	29075		NM_014162	ENSG00000179935	LINC00652	HSPC072	long intergenic non-protein coding RNA 652	ncRNA
166392	chr3	113533501	113534100	+	0	NA	intron (NM_001322297, intron 1 of 24)	intron (NM_001322297, intron 1 of 24)	1245	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
78731	chr15	98713271	98713830	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	-62329	NR_126453	104472848		NR_126453		IRAIN	IGF1R-AS|IGF1RAS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
226227	chr9	66152771	66153500	+	0	NA	Intergenic	CpG	11771	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
61444	chr13	51941971	51942550	+	0	NA	intron (NM_001330579, intron 13 of 18)	intron (NM_001330579, intron 13 of 18)	69190	NM_000053	540		NM_000053	ENSG00000123191	ATP7B	PWD|WC1|WD|WND	ATPase copper transporting beta	protein-coding
196626	chr6	44267571	44268550	+	0	NA	Intergenic	Intergenic	-2390	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
90416	chr17	1341051	1341150	+	0	NA	Intergenic	Intergenic	59122	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
6781	chr1	30761551	30762000	+	0	NA	Intergenic	MIRc|SINE|MIR	-4001	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
24349	chr1	239997821	239998100	+	0	NA	Intergenic	CpG	-9564	NR_036695	645884		NR_036695		RPS7P5	RPS7_2_183	ribosomal protein S7 pseudogene 5	pseudo
171441	chr3	196284351	196285100	+	0	NA	intron (NM_005017, intron 1 of 9)	intron (NM_005017, intron 1 of 9)	3001	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
220458	chr8	100412571	100412730	+	0	NA	Intergenic	AluJo|SINE|Alu	29887	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
30129	chr10	74040551	74040850	+	0	NA	intron (NM_014000, intron 1 of 21)	intron (NM_014000, intron 1 of 21)	42584	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
25376	chr10	6475001	6475230	+	0	NA	intron (NM_001282644, intron 12 of 17)	intron (NM_001282644, intron 12 of 17)	105161	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
73678	chr15	44750621	44751380	+	0	NA	intron (NM_080745, intron 1 of 5).2	AluJb|SINE|Alu	14472	NM_001301145	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
177057	chr4	108030091	108030700	+	0	NA	intron (NM_001331027, intron 6 of 7)	intron (NM_001331027, intron 6 of 7)	25731	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
37012	chr11	12044321	12044800	+	0	NA	intron (NR_135109, intron 1 of 1)	intron (NR_135109, intron 1 of 1)	13685	NR_135109	105376554		NR_135109	ENSG00000254486	LINC02547	-	long intergenic non-protein coding RNA 2547	ncRNA
208234	chr7	65380321	65380830	+	0	NA	intron (NM_001287534, intron 1 of 1)	L1PREC2|LINE|L1	6720	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
131233	chr2	95413771	95414300	+	0	NA	3' UTR (NM_016044, exon 8 of 8)	3' UTR (NM_016044, exon 8 of 8)	11327	NM_016044	51011		NM_016044	ENSG00000115042	FAHD2A	CGI-105	fumarylacetoacetate hydrolase domain containing 2A	protein-coding
226343	chr9	69506451	69506550	+	0	NA	intron (NM_001163, intron 2 of 12)	L1PA2|LINE|L1	165871	NM_001163	320		NM_001163	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta precursor protein binding family A member 1	protein-coding
28405	chr10	47709551	47709850	+	0	NA	intron (NR_160661, intron 1 of 6)	intron (NR_160661, intron 1 of 6)	3639	NR_160660	439965		NR_027634		SHLD2P3	FAM35B2|FAM35DP	shieldin complex subunit 2 pseudogene 3	pseudo
134185	chr2	134312601	134313000	+	0	NA	intron (NM_001371457, intron 3 of 16)	intron (NM_001371457, intron 3 of 16)	58728	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
127473	chr2	42226801	42227480	+	0	NA	intron (NM_019063, intron 1 of 22)	AluJr|SINE|Alu	-56909	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
209924	chr7	92529971	92530330	+	0	NA	intron (NM_032120, intron 2 of 4)	AluSq4|SINE|Alu	1355	NM_001363366	84060		NM_032120	ENSG00000127993	RBM48	C7orf64|HSPC304	RNA binding motif protein 48	protein-coding
28891	chr10	62814801	62815790	+	0	NA	intron (NM_001136177, intron 2 of 2)	CpG	1071	NM_001321037	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
66150	chr14	60327501	60328330	+	0	NA	Intergenic	CpG	4719	NR_146481	101927729		NR_146481	ENSG00000258556	LINC02322	-	long intergenic non-protein coding RNA 2322	ncRNA
135190	chr2	158454321	158454580	+	0	NA	intron (NM_001301684, intron 1 of 11)	intron (NM_001301684, intron 1 of 11)	2303	NM_001301685	130940		NM_138803	ENSG00000153237	CCDC148	-	coiled-coil domain containing 148	protein-coding
114866	chr19	13867771	13868330	+	0	NA	intron (NR_146097, intron 1 of 1)	AluSx1|SINE|Alu	2847	NR_146096	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
79704	chr16	1304221	1305200	+	0	NA	Intergenic	AluY|SINE|Alu	-4442	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
213712	chr7	140252701	140253450	+	0	NA	Intergenic	Intergenic	75814	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
235696	chrX	48761901	48762100	+	0	NA	intron (NM_001080489, intron 1 of 3)	intron (NM_001080489, intron 1 of 3)	253	NM_001080489	392465		NM_001080489	ENSG00000171433	GLOD5	-	glyoxalase domain containing 5	protein-coding
216568	chr8	21915151	21915900	+	0	NA	Intergenic	Intergenic	-1835	NM_001317800	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
133961	chr2	130594051	130594150	+	0	NA	intron (NM_001270421, intron 3 of 3)	intron (NM_001270421, intron 3 of 3)	5475	NM_001270421	55997		NM_032545	ENSG00000136698	CFC1	CFC1B|CRYPTIC|DTGA2|HTX2	cryptic, EGF-CFC family member 1	protein-coding
157899	chr22	49757371	49758050	+	0	NA	Intergenic	Intergenic	66621	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
74761	chr15	63233801	63234000	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	-43650	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
117819	chr19	29966871	29967230	+	0	NA	intron (NR_045557, intron 1 of 9)	intron (NR_045557, intron 1 of 9)	24811	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
219022	chr8	64567671	64567850	+	0	NA	Intergenic	Intergenic	9503	NR_015374	401463		NR_015374	ENSG00000254102	BHLHE22-AS1	-	BHLHE22 antisense RNA 1	ncRNA
49829	chr12	32158621	32158880	+	0	NA	intron (NR_148725, intron 1 of 9)	L2b|LINE|L2	51903	NR_148725	636		NM_001714	ENSG00000151746	BICD1	BICD|bic-D 1	BICD cargo adaptor 1	protein-coding
198915	chr6	110124151	110124250	+	0	NA	intron (NM_001024935, intron 3 of 9)	(TC)n|Simple_repeat|Simple_repeat	55470	NM_003931	8936		NM_003931	ENSG00000112290	WASF1	NEDALVS|SCAR1|WAVE|WAVE1	WASP family member 1	protein-coding
194055	chr6	31855251	31855950	+	0	NA	Intergenic	AluSx|SINE|Alu	7221	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
8161	chr1	39493371	39494200	+	0	NA	intron (NM_181809, intron 1 of 6)	intron (NM_181809, intron 1 of 6)	2149	NM_181809	353500		NM_181809	ENSG00000183682	BMP8A	OP-2|Op2	bone morphogenetic protein 8a	protein-coding
56222	chr12	111683601	111683800	+	0	NA	intron (NM_006768, intron 1 of 11)	AluSz|SINE|Alu	2256	NM_006768	8315		NM_006768	ENSG00000089234	BRAP	BRAP2|IMP|RNF52	BRCA1 associated protein	protein-coding
88183	chr16	81729201	81729400	+	0	NA	Intergenic	Intergenic	-49991	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
195453	chr6	36984551	36985300	+	0	NA	intron (NM_001271641, intron 1 of 11)	intron (NM_001271641, intron 1 of 11)	1271	NM_001271641	23787		NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
95523	chr17	36550301	36551480	+	0	NA	intron (NM_024835, intron 2 of 13)	intron (NM_024835, intron 2 of 13)	5971	NM_024835	79893		NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding
53688	chr12	68481501	68481930	+	0	NA	Intergenic	Intergenic	-30231	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
211033	chr7	102420771	102421530	+	0	NA	intron (NR_038967, intron 8 of 8)	Tigger4|DNA|TcMar-Tigger	-12380	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
176451	chr4	89294221	89295900	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	12740	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
98506	chr17	47489871	47490280	+	0	NA	intron (NR_033934, intron 3 of 5)	intron (NR_033934, intron 3 of 5)	2545	NR_033934	653479		NR_033934		MRPL45P2	-	mitochondrial ribosomal protein L45 pseudogene 2	pseudo
223000	chr8	143272151	143272250	+	0	NA	intron (NM_138465, intron 2 of 3)	intron (NM_138465, intron 2 of 3)	4755	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
146814	chr20	51337571	51337730	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	115327	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
200131	chr6	130224801	130225000	+	0	NA	intron (NM_001258275, intron 2 of 13)	AluSc8|SINE|Alu	-1949	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
103554	chr17	78669021	78669700	+	0	NA	Intergenic	L2|LINE|L2	-37303	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
191985	chr6	16168121	16168530	+	0	NA	Intergenic	Intergenic	26769	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
16636	chr1	155124771	155125650	+	0	NA	Intergenic	Intergenic	-2666	NM_182685	1942		NM_004428	ENSG00000169242	EFNA1	B61|ECKLG|EFL1|EPLG1|GMAN|LERK-1|LERK1|TNFAIP4	ephrin A1	protein-coding
237386	chrX	119482301	119483100	+	0	NA	Intergenic	CpG	-13580	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
221353	chr8	123250971	123251230	+	0	NA	intron (NR_037874, intron 2 of 2)	MSTA|LTR|ERVL-MaLR	-9723	NM_032847	84933		NM_032847	ENSG00000189376	C8orf76	-	chromosome 8 open reading frame 76	protein-coding
20515	chr1	198672571	198673130	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	33810	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
167248	chr3	128496451	128496700	+	0	NA	intron (NR_125398, intron 2 of 2)	CpG	-3374	NM_032638	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
155442	chr22	38464951	38465680	+	0	NA	Intergenic	AluJr|SINE|Alu	-2747	NM_016657	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
119929	chr19	41792601	41793300	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-3637	NM_001815	1084		NM_001815	ENSG00000170956	CEACAM3	CD66D|CEA|CGM1|CGM1a|W264|W282	CEA cell adhesion molecule 3	protein-coding
35470	chr11	1482071	1482630	+	0	NA	intron (NM_001172223, intron 1 of 4)	intron (NM_001172223, intron 1 of 4)	-1464	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
159636	chr3	15302451	15302750	+	0	NA	intron (NM_004844, intron 3 of 8)	intron (NM_004844, intron 3 of 8)	29986	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
52647	chr12	56291471	56292430	+	0	NA	intron (NM_004077, intron 1 of 10)	intron (NM_004077, intron 1 of 10)	8380	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
118239	chr19	35215201	35215400	+	0	NA	Intergenic	MER41A|LTR|ERV1	13425	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
139008	chr2	218369421	218369900	+	0	NA	Intergenic	AluJr|SINE|Alu	-1758	NR_110573	101928513		NR_110573	ENSG00000225062	CATIP-AS1	-	CATIP antisense RNA 1	ncRNA
193104	chr6	28922811	28924380	+	0	NA	exon (NM_006510, exon 1 of 8)	exon (NM_006510, exon 1 of 8)	390	NM_006510	5987		NM_006510	ENSG00000204713	TRIM27	RFP|RNF76	tripartite motif containing 27	protein-coding
126846	chr2	31415951	31416630	+	0	NA	Intergenic	AluSx|SINE|Alu	-1548	NM_000379	7498		NM_000379	ENSG00000158125	XDH	XAN1|XO|XOR	xanthine dehydrogenase	protein-coding
61055	chr13	48248821	48249130	+	0	NA	intron (NM_021999, intron 1 of 5)	intron (NM_021999, intron 1 of 5)	15769	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
6794	chr1	30800451	30800930	+	0	NA	Intergenic	MIRb|SINE|MIR	-23962	NR_146732	105378622		NR_146732	ENSG00000223382	LINC01778	-	long intergenic non-protein coding RNA 1778	ncRNA
232639	chr9	136465701	136466100	+	0	NA	intron (NM_014866, intron 8 of 31)	intron (NM_014866, intron 8 of 31)	-17110	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
102637	chr17	76026371	76026830	+	0	NA	intron (NM_001320747, intron 1 of 21)	intron (NM_001320747, intron 1 of 21)	706	NM_001320747	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
133855	chr2	128315251	128315750	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	3368	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
224548	chr9	19375971	19376130	+	0	NA	3' UTR (NM_001010, exon 6 of 6)	3' UTR (NM_001010, exon 6 of 6)	4186	NM_001010	6194		NM_001010	ENSG00000137154	RPS6	S6|eS6	ribosomal protein S6	protein-coding
29550	chr10	71318871	71320230	+	0	NA	5' UTR (NM_001363518, exon 1 of 6)	5' UTR (NM_001363518, exon 1 of 6)	291	NM_018344	55315		NM_018344	ENSG00000198246	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 member 3	protein-coding
58249	chr12	128794501	128795330	+	0	NA	intron (NM_145648, intron 7 of 7)	intron (NM_145648, intron 7 of 7)	29043	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
236095	chrX	56798971	56799380	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-61591	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
28502	chr10	50143501	50143830	+	0	NA	Intergenic	L2a|LINE|L2	75711	NM_001005751	387680		NM_018232	ENSG00000099290	WASHC2A	FAM21A|FAM21B|bA56A21.1|bA98I6.1	WASH complex subunit 2A	protein-coding
86309	chr16	58755751	58756750	+	0	NA	Intergenic	Intergenic	-21934	NM_002080	2806		NM_002080	ENSG00000125166	GOT2	DEE82|KAT4|KATIV|KYAT4|mitAAT	glutamic-oxaloacetic transaminase 2	protein-coding
223281	chr8	143735501	143735980	+	0	NA	intron (NM_001381874, intron 1 of 13)	intron (NM_001381874, intron 1 of 13)	1601	NM_001381874	642574		NM_001381874	ENSG00000203499	IQANK1	CACClnc|FAM83H-AS1|FAM83HAS1|onco-lncRNA-3	IQ motif and ankyrin repeat containing 1	protein-coding
150522	chr21	42949271	42949700	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	1529	NR_049889	100847013		NR_049889	ENSG00000264580	MIR5692B	-	microRNA 5692b	ncRNA
222328	chr8	133521851	133521950	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	49987	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
235940	chrX	53239651	53239750	+	0	NA	intron (NM_015075, intron 10 of 13)	intron (NM_015075, intron 10 of 13)	-14278	NM_001353984	8242		NM_004187	ENSG00000126012	KDM5C	DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169	lysine demethylase 5C	protein-coding
88728	chr16	86018501	86018780	+	0	NA	Intergenic	Intergenic	100293	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
80661	chr16	3013621	3013880	+	0	NA	TTS (NM_021195)	TTS (NM_021195)	827	NM_020982	9080		NM_020982	ENSG00000213937	CLDN9	DFNB116	claudin 9	protein-coding
65596	chr14	52153951	52154430	+	0	NA	Intergenic	Intergenic	-85131	NM_007361	22795		NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
56675	chr12	120002871	120003230	+	0	NA	intron (NR_147894, intron 3 of 8)	AluSx|SINE|Alu	13206	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
180722	chr5	30861251	30861350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-332386	NM_004932	1004		NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	cadherin 6	protein-coding
42549	chr11	71734401	71734600	+	0	NA	Intergenic	Intergenic	79359	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
202563	chr6	158674671	158675000	+	0	NA	intron (NM_001318745, intron 2 of 14)	intron (NM_001318745, intron 2 of 14)	11432	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
128253	chr2	54564371	54564530	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	6056	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
83530	chr16	27515871	27516300	+	0	NA	intron (NM_001520, intron 6 of 36)	intron (NM_001520, intron 6 of 36)	33828	NM_001520	2975		NM_001520	ENSG00000077235	GTF3C1	TFIIIC|TFIIIC220|TFIIICalpha	general transcription factor IIIC subunit 1	protein-coding
166675	chr3	120159251	120159430	+	0	NA	Intergenic	L2b|LINE|L2	-64893	NM_001146156	2932		NM_002093	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding
56714	chr12	120100421	120100680	+	0	NA	intron (NM_006861, intron 3 of 5)	intron (NM_006861, intron 3 of 5)	16203	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
138497	chr2	207150001	207150400	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	15748	NM_003709	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
119194	chr19	39434151	39434250	+	0	NA	intron (NM_001321111, intron 2 of 4)	intron (NM_001321111, intron 2 of 4)	1749	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
208499	chr7	69199751	69199850	+	0	NA	Intergenic	LTR50|LTR|ERVL	397824	NR_148926	100507468		NR_108105	ENSG00000234215	CT66	-	cancer/testis associated transcript 66	ncRNA
159114	chr3	12586321	12586900	+	0	NA	intron (NR_148942, intron 13 of 16)	intron (NR_148942, intron 13 of 16)	-25611	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
121602	chr19	47413401	47413600	+	0	NA	intron (NM_001009813, intron 6 of 12)	(GGTGT)n|Simple_repeat|Simple_repeat	6027	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
39402	chr11	60821901	60822300	+	0	NA	Intergenic	Intergenic	-20013	NM_024098	79080		NM_024098	ENSG00000110104	CCDC86	Cgr1	coiled-coil domain containing 86	protein-coding
76184	chr15	73265451	73265880	+	0	NA	intron (NM_001172623, intron 15 of 27)	intron (NM_001172623, intron 15 of 27)	-34245	NR_162148	113219462		NR_162148		MIR12135	-	microRNA 12135	ncRNA
124082	chr19	55626101	55627030	+	0	NA	Intergenic	Intergenic	-1999	NM_203374	147808		NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
8810	chr1	42943051	42943780	+	0	NA	intron (NM_006516, intron 1 of 9)	intron (NM_006516, intron 1 of 9)	15453	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
230635	chr9	128655471	128656000	+	0	NA	intron (NM_052844, intron 1 of 8)	AluY|SINE|Alu	1115	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
137216	chr2	191521671	191521980	+	0	NA	Intergenic	Intergenic	-156247	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
92612	chr17	10040521	10040780	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-3993	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
134269	chr2	135733271	135733630	+	0	NA	Intergenic	Intergenic	-8405	NM_014607	23190		NM_014607	ENSG00000144224	UBXN4	UBXD2|UBXDC1|erasin	UBX domain protein 4	protein-coding
204267	chr7	2636771	2636930	+	0	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	4864	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
38450	chr11	45354051	45354350	+	0	NA	Intergenic	L2|LINE|L2	-1171	NR_120557	101928812		NR_120557	ENSG00000254427	LINC02696	-	long intergenic non-protein coding RNA 2696	ncRNA
162128	chr3	46939871	46940430	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	36351	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
193472	chr6	30532021	30533080	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	16284	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
2784	chr1	10889951	10890450	+	0	NA	Intergenic	L2a|LINE|L2	76487	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
64319	chr14	23584371	23584530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-5660	NM_032452	84502		NM_032452	ENSG00000092051	JPH4	JP4|JPHL1	junctophilin 4	protein-coding
54256	chr12	85317951	85318050	+	0	NA	Intergenic	L1PA2|LINE|L1	37780	NM_006982	8092		NM_006982	ENSG00000180318	ALX1	CART1|FND3|HEL23	ALX homeobox 1	protein-coding
121952	chr19	48472451	48473280	+	0	NA	intron (NM_017457, intron 4 of 11)	intron (NM_017457, intron 4 of 11)	3496	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
21414	chr1	205298521	205298780	+	0	NA	Intergenic	Intergenic	23095	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
48381	chr12	9470051	9470580	+	0	NA	intron (NR_153413, intron 2 of 45)	L2a|LINE|L2	22028	NR_153413	408186		NR_153413		LOC408186	OVOS|OVOS1	alpha-2-macroglobulin like 1 pseudogene	pseudo
17332	chr1	156476451	156476750	+	0	NA	intron (NM_005920, intron 7 of 11)	intron (NM_005920, intron 7 of 11)	14087	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
216596	chr8	22044951	22045900	+	0	NA	intron (NM_001304478, intron 2 of 4)	(CCCAGC)n|Simple_repeat|Simple_repeat	2605	NM_003867	8822		NM_003867	ENSG00000158815	FGF17	FGF-13|FGF-17|HH20	fibroblast growth factor 17	protein-coding
184430	chr5	98976021	98976280	+	0	NA	intron (NR_151718, intron 1 of 3)	intron (NR_151718, intron 1 of 3)	47016	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
235668	chrX	48576471	48576650	+	0	NA	exon (NM_006743, exon 5 of 7)	exon (NM_006743, exon 5 of 7)	2076	NM_006743	5935		NM_006743	ENSG00000102317	RBM3	IS1-RNPL|RNPL	RNA binding motif protein 3	protein-coding
232701	chr9	136545101	136547780	+	0	NA	promoter-TSS (NM_017617)	promoter-TSS (NM_017617)	-181	NR_039821	100616301		NR_039821	ENSG00000265181	MIR4674	-	microRNA 4674	ncRNA
229641	chr9	124215421	124215850	+	0	NA	Intergenic	Intergenic	-41971	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
104064	chr17	80195771	80196400	+	0	NA	intron (NM_052819, intron 8 of 9)	intron (NM_052819, intron 8 of 9)	8285	NM_052819	79092		NM_024110	ENSG00000141527	CARD14	BIMP2|CARMA2|PRP|PSORS2|PSS1	caspase recruitment domain family member 14	protein-coding
224989	chr9	33107221	33108030	+	0	NA	intron (NM_001378497, intron 2 of 2)	intron (NM_001378497, intron 2 of 2)	-1067	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
114898	chr19	13919801	13920250	+	0	NA	intron (NM_017721, intron 12 of 28)	AluJr|SINE|Alu	13824	NM_017721	54862		NM_017721	ENSG00000132024	CC2D1A	Aki-1|FREUD-1|Freud-1/Aki1|Lgd2|MRT3|TAPE	coiled-coil and C2 domain containing 1A	protein-coding
154818	chr22	37045951	37046980	+	0	NA	Intergenic	Intergenic	-5271	NM_001282684	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
15805	chr1	151288451	151288880	+	0	NA	exon (NM_001304764, exon 3 of 9)	exon (NM_001304764, exon 3 of 9)	6366	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
15491	chr1	150387901	150388100	+	0	NA	intron (NM_015203, intron 1 of 10)	AluJo|SINE|Alu	23889	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
11499	chr1	90841371	90841880	+	0	NA	intron (NR_147931, intron 1 of 2)	intron (NR_147931, intron 1 of 2)	-5464	NR_147932	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
33382	chr10	117542151	117542800	+	0	NA	promoter-TSS (NM_004098)	promoter-TSS (NM_004098)	30	NM_001165924	2018		NM_004098	ENSG00000170370	EMX2	-	empty spiracles homeobox 2	protein-coding
131581	chr2	96841351	96842130	+	0	NA	intron (NM_144994, intron 3 of 8)	MLT1C|LTR|ERVL-MaLR	2281	NM_144994	200539		NM_144994	ENSG00000163126	ANKRD23	DARP|MARP3	ankyrin repeat domain 23	protein-coding
93281	chr17	18107321	18107780	+	0	NA	TTS (NR_164159)	TTS (NR_164159)	-1206	NM_016239	51168		NM_016239	ENSG00000091536	MYO15A	DFNB3|MYO15	myosin XVA	protein-coding
161153	chr3	39065201	39065500	+	0	NA	intron (NM_001303402, intron 2 of 17)	intron (NM_001303402, intron 2 of 17)	13058	NM_001346228	57599		NM_020839	ENSG00000114742	WDR48	Bun62|P80|SPG60|UAF1	WD repeat domain 48	protein-coding
147435	chr20	58906101	58906600	+	0	NA	intron (NM_001077488, intron 6 of 12)	intron (NM_001077488, intron 6 of 12)	14187	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
138836	chr2	216475221	216475550	+	0	NA	exon (NM_001127207, exon 15 of 18)	exon (NM_001127207, exon 15 of 18)	-23459	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
219944	chr8	89216321	89216680	+	0	NA	Intergenic	Intergenic	541211	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
165076	chr3	71468901	71469600	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	72839	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
221059	chr8	116864751	116865530	+	0	NA	intron (NM_006265, intron 2 of 13)	intron (NM_006265, intron 2 of 13)	-9284	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
193565	chr6	30641121	30641400	+	0	NA	intron (NM_001318763, intron 8 of 9).6	Tigger19b|DNA|TcMar-Tigger	-5873	NM_001109938	221545		NM_145029	ENSG00000204564	C6orf136	-	chromosome 6 open reading frame 136	protein-coding
33518	chr10	119206051	119208600	+	0	NA	promoter-TSS (NM_005308)	promoter-TSS (NM_005308)	-246	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
32707	chr10	104120371	104121300	+	0	NA	intron (NM_001384830, intron 1 of 3)	intron (NM_001384830, intron 1 of 3)	669	NM_001384830	119392		NM_145247	ENSG00000156384	SFR1	C10orf78|MEI5|MEIR5|bA373N18.1	SWI5 dependent homologous recombination repair protein 1	protein-coding
22616	chr1	223479001	223479200	+	0	NA	Intergenic	Intergenic	85685	NM_152610	164127		NM_152610	ENSG00000178395	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
138511	chr2	207225721	207225980	+	0	NA	intron (NR_110283, intron 3 of 3)	intron (NR_110283, intron 3 of 3)	-13961	NR_146555	105373853		NR_146555	ENSG00000229647	MYOSLID	-	myocardin-induced smooth muscle lncRNA, inducer of differentiation	ncRNA
123311	chr19	53573571	53575100	+	0	NA	intron (NM_001317116, intron 4 of 4)	intron (NM_001317116, intron 4 of 4)	19028	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
211339	chr7	104940021	104942130	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14430	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
163785	chr3	52392521	52393480	+	0	NA	exon (NM_015512, exon 65 of 78)	exon (NM_015512, exon 65 of 78)	17008	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
657	chr1	1358151	1358600	+	0	NA	intron (NM_001282583, intron 1 of 9)	intron (NM_001282583, intron 1 of 9)	172	NM_001282585	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
60442	chr13	41006321	41006730	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	12791	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
207664	chr7	45087101	45087300	+	0	NA	intron (NM_001146334, intron 1 of 7)	intron (NM_001146334, intron 1 of 7)	1769	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
88830	chr16	87484901	87485380	+	0	NA	intron (NM_015144, intron 1 of 12)	intron (NM_015144, intron 1 of 12)	7884	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
89787	chr16	89483701	89484460	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	6481	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
210684	chr7	100563521	100564500	+	0	NA	intron (NM_006076, intron 10 of 11)	intron (NM_006076, intron 10 of 11)	9890	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
109872	chr19	1243021	1243480	+	0	NA	intron (NM_001001975, intron 2 of 4)	AluJb|SINE|Alu	1499	NM_001687	513		NM_001687	ENSG00000099624	ATP5F1D	ATP5D|MC5DN5	ATP synthase F1 subunit delta	protein-coding
174048	chr4	26881171	26881730	+	0	NA	intron (NM_020860, intron 1 of 11)	AluSx|SINE|Alu	20609	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
63902	chr14	21894051	21894430	+	0	NA	Intergenic	Intergenic	-223223	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
37343	chr11	14889871	14890150	+	0	NA	intron (NM_024514, intron 1 of 4)	AluY|SINE|Alu	1661	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
189389	chr5	172721721	172723030	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-33128	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
185497	chr5	131313851	131313950	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluSx|SINE|Alu	49847	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
63371	chr13	114050671	114050830	+	0	NA	intron (NM_001320822, intron 3 of 23).2	intron (NM_001320822, intron 3 of 23).2	27205	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
146081	chr20	47526151	47526450	+	0	NA	intron (NM_181659, intron 1 of 22)	SVA_D|Retroposon|SVA	24413	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
50563	chr12	48160921	48161180	+	0	NA	Intergenic	Intergenic	-3535	NM_001319296	140461		NM_024095	ENSG00000177981	ASB8	PP14212	ankyrin repeat and SOCS box containing 8	protein-coding
237501	chrX	119981771	119981930	+	0	NA	Intergenic	MER66C|LTR|ERV1	33701	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
84200	chr16	29864401	29864600	+	0	NA	intron (NR_015396, intron 2 of 5)	intron (NR_015396, intron 2 of 5)	666	NR_015396	440356		NR_015396	ENSG00000293487	CDIPTOSP	CDIPT-AS1|lnc-CTHCC	CDIP transferase opposite strand, pseudogene	ncRNA
123817	chr19	55177001	55177230	+	0	NA	intron (NM_001297774, intron 1 of 6)	intron (NM_001297774, intron 1 of 6)	2233	NM_001297774	6861		NM_003180	ENSG00000129990	SYT5	-	synaptotagmin 5	protein-coding
156080	chr22	40048051	40048730	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSx3|SINE|Alu	3573	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
43112	chr11	75143951	75144130	+	0	NA	Intergenic	AluSx|SINE|Alu	-7067	NM_001145212	11309		NM_007256	ENSG00000137491	SLCO2B1	OATP-B|OATP2B1|OATPB|SLC21A9	solute carrier organic anion transporter family member 2B1	protein-coding
220981	chr8	115427021	115428130	+	0	NA	intron (NM_001282903, intron 5 of 6)	MIRb|SINE|MIR	240438	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
92957	chr17	17051371	17052080	+	0	NA	intron (NM_015134, intron 1 of 22)	intron (NM_015134, intron 1 of 22)	9268	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
10824	chr1	77939171	77939330	+	0	NA	intron (NM_144573, intron 11 of 12)	intron (NM_144573, intron 11 of 12)	39822	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
126879	chr2	32068951	32069580	+	0	NA	intron (NM_001363875, intron 1 of 15)	intron (NM_001363875, intron 1 of 15)	5709	NM_001377959	6683		NM_014946	ENSG00000021574	SPAST	ADPSP|FSP2|SPG4	spastin	protein-coding
40007	chr11	62649471	62649980	+	0	NA	exon (NM_030628, exon 2 of 2)	exon (NM_030628, exon 2 of 2)	-2999	NM_001278194	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
80879	chr16	3615321	3615580	+	0	NA	Intergenic	Intergenic	-3844	NM_032444	84464		NM_032444	ENSG00000188827	SLX4	BTBD12|FANCP|MUS312	SLX4 structure-specific endonuclease subunit	protein-coding
51978	chr12	53951001	53951400	+	0	NA	Intergenic	Intergenic	-3703	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
192051	chr6	16511971	16512830	+	0	NA	intron (NM_000332, intron 6 of 8)	intron (NM_000332, intron 6 of 8)	247784	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
193	chr1	687321	687580	+	0	NA	promoter-TSS (NM_001005277).2	promoter-TSS (NM_001005277).2	-796	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
35063	chr11	602701	603650	+	0	NA	intron (NM_001286582, intron 10 of 17)	AluJb|SINE|Alu	12775	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
118167	chr19	35028771	35028930	+	0	NA	Intergenic	AluSc|SINE|Alu	-1620	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
182899	chr5	70229871	70230030	+	0	NA	intron (NR_027386, intron 3 of 5).2	THE1B|LTR|ERVL-MaLR	-4155	NR_024054	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
75430	chr15	65790671	65791200	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	1358	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
139464	chr2	223944071	223944600	+	0	NA	intron (NM_020830, intron 1 of 11)	CpG	1000	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
178426	chr4	147786771	147786930	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	4255	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
165343	chr3	88149271	88150530	+	0	NA	promoter-TSS (NM_001195308)	promoter-TSS (NM_001195308)	-34	NM_001195308	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
26441	chr10	17257521	17258030	+	0	NA	Intergenic	Intergenic	-27790	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
64117	chr14	22829571	22831030	+	0	NA	intron (NM_181307, intron 3 of 3)	intron (NM_181307, intron 3 of 3)	413	NM_181305	122704		NM_178336	ENSG00000172590	MRPL52	mL52	mitochondrial ribosomal protein L52	protein-coding
136489	chr2	177226451	177227030	+	0	NA	Intergenic	Intergenic	13946	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
85228	chr16	47779451	47779850	+	0	NA	Intergenic	Intergenic	-78931	NR_110650	101927132		NR_110650	ENSG00000261231	LINC02133	-	long intergenic non-protein coding RNA 2133	ncRNA
206487	chr7	33057071	33057230	+	0	NA	intron (NM_001374336, intron 1 of 10)	MER66C|LTR|ERV1	5626	NM_001002010	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
140872	chr2	237512601	237513070	+	0	NA	intron (NR_104019, intron 4 of 16)	intron (NR_104019, intron 4 of 16)	1904	NR_106869	102465486		NR_106869	ENSG00000277842	MIR6811	hsa-mir-6811	microRNA 6811	ncRNA
130261	chr2	84860721	84860980	+	0	NA	intron (NM_001307978, intron 2 of 4)	intron (NM_001307978, intron 2 of 4)	20234	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
91403	chr17	4694751	4694850	+	0	NA	intron (NM_001278241, intron 1 of 18)	AluSx1|SINE|Alu	9337	NM_001278241	27043		NM_014389	ENSG00000141456	PELP1	MNAR|P160	proline, glutamate and leucine rich protein 1	protein-coding
191492	chr6	11223551	11223650	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	9068	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
146200	chr20	48775601	48775800	+	0	NA	intron (NM_020820, intron 1 of 39)	THE1B|LTR|ERVL-MaLR	52299	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
230552	chr9	128417951	128418680	+	0	NA	promoter-TSS (NM_001286760)	promoter-TSS (NM_001286760)	-845	NM_001286760	51148		NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
238206	chrX	137428221	137429080	+	0	NA	Intergenic	CpG	-137477	NM_003413	7547		NM_003413	ENSG00000156925	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding
38111	chr11	35228101	35228300	+	0	NA	intron (NM_001202555, intron 9 of 9)	intron (NM_001202555, intron 9 of 9)	65250	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
227682	chr9	92998221	92998480	+	0	NA	intron (NM_001369951, intron 3 of 17)	L1PA5|LINE|L1	16594	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
212100	chr7	116150801	116151200	+	0	NA	Intergenic	Intergenic	-59539	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
49560	chr12	26846071	26846430	+	0	NA	Intergenic	Intergenic	-13056	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
92435	chr17	8443101	8443300	+	0	NA	intron (NM_001025579, intron 1 of 9)	L2c|LINE|L2	7316	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
210783	chr7	100742401	100742600	+	0	NA	intron (NM_173059, intron 7 of 45)	SVA_F|Retroposon|SVA	8905	NR_111918	7455		NM_003386	ENSG00000146839	ZAN	-	zonadhesin	protein-coding
165227	chr3	72999871	73000550	+	0	NA	intron (NM_001318025, intron 2 of 7)	AluJb|SINE|Alu	3399	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
207763	chr7	50146721	50146980	+	0	NA	intron (NM_001161834, intron 7 of 8)	intron (NM_001161834, intron 7 of 8)	50967	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
112606	chr19	6737001	6738200	+	0	NA	promoter-TSS (NR_106849)	promoter-TSS (NR_106849)	22	NM_001080452	56927		NM_020171	ENSG00000125734	GPR108	LUSTR2	G protein-coupled receptor 108	protein-coding
38818	chr11	47295321	47296130	+	0	NA	intron (NR_164839, intron 21 of 34)	intron (NR_164839, intron 21 of 34)	-23615	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
225392	chr9	35042151	35042600	+	0	NA	exon (NM_001040410, exon 1 of 2)	exon (NM_001040410, exon 1 of 2)	135	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
173500	chr4	9493071	9493430	+	0	NA	Intergenic	SATR1|Satellite|Satellite	48716	NM_001040448	644414		NM_001040448	ENSG00000186146	DEFB131A	DEFB-31|DEFB131	defensin beta 131A	protein-coding
55749	chr12	108468401	108468700	+	0	NA	intron (NR_120483, intron 2 of 3)	intron (NR_120483, intron 2 of 3)	5139	NR_120483	102723562		NR_120483	ENSG00000247213	LINC01498	-	long intergenic non-protein coding RNA 1498	ncRNA
51741	chr12	53233871	53234780	+	0	NA	Intergenic	Intergenic	-2069	NM_001243730	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
44907	chr11	115215771	115216230	+	0	NA	intron (NM_001301043, intron 6 of 11)	intron (NM_001301043, intron 6 of 11)	-117577	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
186364	chr5	134877171	134877750	+	0	NA	intron (NM_024715, intron 1 of 4)	L2b|LINE|L2	3089	NM_024715	79770		NM_024715	ENSG00000113621	TXNDC15	BUG|C5orf14|MKS14|UNQ335	thioredoxin domain containing 15	protein-coding
185836	chr5	132466121	132468650	+	0	NA	intron (NR_161242, intron 3 of 3)	MIRb|SINE|MIR	23388	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
54776	chr12	94169551	94169850	+	0	NA	intron (NM_005761, intron 2 of 30)	intron (NM_005761, intron 2 of 30)	21123	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
49595	chr12	27237971	27238800	+	0	NA	Intergenic	Intergenic	-5901	NM_015000	23012		NM_015000	ENSG00000211455	STK38L	NDR2	serine/threonine kinase 38 like	protein-coding
156201	chr22	40291271	40291650	+	0	NA	intron (NM_015088, intron 10 of 20)	intron (NM_015088, intron 10 of 20)	-55040	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
112956	chr19	7799351	7800050	+	0	NA	Intergenic	HERVKC4-int|LTR|ERVK	12216	NR_002931	440508		NR_002931		CLEC4GP1	-	C-type lectin domain family 4 member G pseudogene 1	pseudo
185511	chr5	131324451	131324750	+	0	NA	intron (NM_001375633, intron 2 of 5)	intron (NM_001375633, intron 2 of 5)	60547	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
82482	chr16	17341951	17342330	+	0	NA	intron (NM_022166, intron 2 of 11)	L2a|LINE|L2	128820	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
188190	chr5	150626021	150626300	+	0	NA	intron (NM_001166209, intron 2 of 2)	intron (NM_001166209, intron 2 of 2)	8516	NM_001166209	11346		NM_007286	ENSG00000171992	SYNPO	SYNPO1	synaptopodin	protein-coding
86107	chr16	57656321	57657180	+	0	NA	intron (NM_001370440, intron 10 of 14)	MIR|SINE|MIR	-11556	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
115791	chr19	16371101	16372850	+	0	NA	intron (NR_047665, intron 21 of 22)	intron (NR_047665, intron 21 of 22)	47149	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
155711	chr22	39113871	39114030	+	0	NA	Intergenic	AluSz|SINE|Alu	16706	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
225143	chr9	33738071	33738330	+	0	NA	intron (NR_109755, intron 1 of 1)	intron (NR_109755, intron 1 of 1)	216	NR_109755	101929688		NR_109755	ENSG00000235481	UBE2R2-AS1	LINC01251	UBE2R2 antisense RNA 1	ncRNA
20134	chr1	192553801	192554150	+	0	NA	Intergenic	Intergenic	-21798	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
165049	chr3	71440071	71440800	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluSx4|SINE|Alu	101654	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
101015	chr17	64749121	64749250	+	0	NA	TTS (NR_026899)	TTS (NR_026899)	-31574	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
121420	chr19	47007271	47007430	+	0	NA	Intergenic	AluSc8|SINE|Alu	-12487	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
93806	chr17	20535051	20535430	+	0	NA	Intergenic	Intergenic	-30742	NR_029393	644945		NR_029393	ENSG00000291196	KRT16P3	KERSMCR	keratin 16 pseudogene 3	pseudo
115460	chr19	15349371	15349530	+	0	NA	Intergenic	AluSx|SINE|Alu	-16911	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
145710	chr20	45032551	45033080	+	0	NA	intron (NM_006282, intron 10 of 10)	L1PA15|LINE|L1	66303	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
171559	chr3	196898771	196898930	+	0	NA	intron (NM_001308045, intron 2 of 8)	(TTCGA)n|Simple_repeat|Simple_repeat	30930	NM_152699	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
108085	chr18	61088871	61089030	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-244480	NM_031891	28316		NM_031891	ENSG00000101542	CDH20	CDH7L3|Cdh7	cadherin 20	protein-coding
165192	chr3	72482701	72483380	+	0	NA	Intergenic	L3b|LINE|CR1	-36417	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
104408	chr17	81053671	81054650	+	0	NA	intron (NM_001385148, intron 2 of 13)	intron (NM_001385148, intron 2 of 13)	-3574	NM_001385147	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
9148	chr1	45518151	45518800	+	0	NA	intron (NM_002574, intron 2 of 5)	AluSp|SINE|Alu	3409	NM_181697	5052		NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
148893	chr21	8462771	8463500	+	0	NA	Intergenic	Intergenic	21989	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
35609	chr11	1763471	1764730	+	0	NA	promoter-TSS (NM_001909)	promoter-TSS (NM_001909)	-173	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
682	chr1	1383671	1384730	+	0	NA	Intergenic	Intergenic	-8993	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
189083	chr5	170284721	170285130	+	0	NA	intron (NM_005565, intron 3 of 20)	AluSx1|SINE|Alu	12852	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
31601	chr10	97362751	97363050	+	0	NA	intron (NM_015179, intron 30 of 33)	intron (NM_015179, intron 30 of 33)	-28171	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
213441	chr7	138625921	138626200	+	0	NA	intron (NM_174959, intron 8 of 11)	intron (NM_174959, intron 8 of 11)	38164	NM_001331192	136306		NM_174959	ENSG00000157703	SVOPL	SLC22B5	SVOP like	protein-coding
204139	chr7	2357221	2357480	+	0	NA	intron (NM_001362791, intron 1 of 18)	intron (NM_001362791, intron 1 of 18)	2523	NM_001362791	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
14735	chr1	145987571	145987730	+	0	NA	Intergenic	Intergenic	8094	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
134137	chr2	134174921	134175380	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	48025	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
218809	chr8	59068821	59069280	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	50097	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
44336	chr11	102414471	102414780	+	0	NA	intron (NM_052932, intron 2 of 4)	L1PA15|LINE|L1	38140	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
177112	chr4	108091771	108091930	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	74947	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
234705	chrX	20455121	20455450	+	0	NA	Intergenic	L1MC5a|LINE|L1	-188376	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
125993	chr2	25301451	25302430	+	0	NA	intron (NR_135490, intron 2 of 23)	intron (NR_135490, intron 2 of 23)	26781	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
23802	chr1	234322901	234323250	+	0	NA	exon (NM_001300845, exon 7 of 7)	exon (NM_001300845, exon 7 of 7)	16608	NR_039818	100616380		NR_039818	ENSG00000264377	MIR4671	-	microRNA 4671	ncRNA
66210	chr14	61296351	61296450	+	0	NA	Intergenic	Intergenic	-15062	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
145567	chr20	44386421	44386800	+	0	NA	intron (NR_109949, intron 2 of 3)	MER20|DNA|hAT-Charlie	9096	NR_109949	101927219		NR_109949	ENSG00000229005	HNF4A-AS1	uc002xlx	HNF4A antisense RNA 1	ncRNA
70459	chr14	102059271	102059630	+	0	NA	Intergenic	AluSp|SINE|Alu	27594	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
131306	chr2	96114371	96115150	+	0	NA	3' UTR (NM_000682, exon 1 of 1)	3' UTR (NM_000682, exon 1 of 1)	1811	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
180895	chr5	34179701	34180100	+	0	NA	intron (NR_146599, intron 3 of 11)	intron (NR_146599, intron 3 of 11)	-9681	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
155832	chr22	39401451	39401950	+	0	NA	intron (NM_153497, intron 1 of 10)	intron (NM_153497, intron 1 of 10)	1920	NM_153497	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
168685	chr3	150607351	150607650	+	0	NA	intron (NM_016275, intron 1 of 5)	L2c|LINE|L2	4179	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
102930	chr17	76587721	76587980	+	0	NA	Intergenic	AluSx|SINE|Alu	-1990	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
126436	chr2	27952851	27953480	+	0	NA	intron (NM_199193, intron 4 of 13)	AluJo|SINE|Alu	-43202	NR_036230	100422965		NR_036230	ENSG00000265321	MIR4263	-	microRNA 4263	ncRNA
159755	chr3	16270971	16271130	+	0	NA	exon (NM_001330670, exon 3 of 9)	exon (NM_001330670, exon 3 of 9)	5838	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
161488	chr3	42507321	42507930	+	0	NA	intron (NM_001251883, intron 1 of 9)	intron (NM_001251883, intron 1 of 9)	4982	NM_004624	7433		NM_004624	ENSG00000114812	VIPR1	HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R	vasoactive intestinal peptide receptor 1	protein-coding
43951	chr11	93660051	93660350	+	0	NA	Intergenic	L2|LINE|L2	-1482	NM_033395	85459		NM_033395	ENSG00000166004	CEP295	KIAA1731|SCKL11	centrosomal protein 295	protein-coding
55967	chr12	110078371	110078530	+	0	NA	Intergenic	Intergenic	-4811	NR_148515	400073		NM_207435	ENSG00000174456	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
16172	chr1	153781171	153781750	+	0	NA	Intergenic	AluSx3|SINE|Alu	6053	NM_001317929	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
60940	chr13	46333351	46333450	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-35556	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
124734	chr2	6826351	6826750	+	0	NA	Intergenic	L2a|LINE|L2	13914	NR_126359	104326052		NR_126359		NRIR	lncCMPK2|lncRNA-CMPK2	negative regulator of interferon response	ncRNA
94397	chr17	28973871	28974430	+	0	NA	intron (NM_178860, intron 3 of 16)	intron (NM_178860, intron 3 of 16)	-22632	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
68292	chr14	77151401	77151600	+	0	NA	Intergenic	Intergenic	-9709	NM_174976	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
79513	chr16	800871	801030	+	0	NA	promoter-TSS (NM_016541)	promoter-TSS (NM_016541)	-216	NM_016541	51764		NM_016541	ENSG00000127588	GNG13	G(gamma)13|HG3J|h2-35	G protein subunit gamma 13	protein-coding
80167	chr16	2112551	2112650	+	0	NA	intron (NM_001009944, intron 13 of 45)	intron (NM_001009944, intron 13 of 45)	-5847	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
117420	chr19	19634401	19634630	+	0	NA	exon (NM_001288999, exon 17 of 20)	exon (NM_001288999, exon 17 of 20)	-6295	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
144392	chr20	35251371	35251530	+	0	NA	intron (NM_006690, intron 2 of 8)	L2c|LINE|L2	24760	NM_006690	10893		NM_006690	ENSG00000125966	MMP24	MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding
18466	chr1	161605021	161605300	+	0	NA	promoter-TSS (NR_024151)	promoter-TSS (NR_024151)	-899	NR_024151	3311		NR_024151	ENSG00000225217	HSPA7	HSP70B	heat shock protein family A (Hsp70) member 7 (pseudogene)	pseudo
162804	chr3	49109021	49109650	+	0	NA	intron (NM_001199160, intron 26 of 26)	intron (NM_001199160, intron 26 of 26)	-4578	NM_001272073	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
5658	chr1	26291701	26292250	+	0	NA	intron (NM_001077262, intron 4 of 10)	L2|LINE|L2	11889	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
216825	chr8	22579901	22580880	+	0	NA	promoter-TSS (NM_001368120)	promoter-TSS (NM_001368120)	-85	NM_176871	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
113201	chr19	8447251	8448030	+	0	NA	intron (NM_031203, intron 1 of 16)	AluJb|SINE|Alu	2665	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
235647	chrX	48521291	48522700	+	0	NA	intron (NM_006579, intron 1 of 4)	CpG	187	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
161615	chr3	43220671	43221030	+	0	NA	Intergenic	Intergenic	-65662	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
123254	chr19	53333121	53334980	+	0	NA	intron (NM_138374, intron 1 of 3)	CpG	301	NM_138374	91664		NM_138374	ENSG00000213799	ZNF845	-	zinc finger protein 845	protein-coding
168418	chr3	142437751	142438050	+	0	NA	intron (NM_019001, intron 1 of 41)	L1MA2|LINE|L1	10137	NM_019001	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
105649	chr18	2337601	2337800	+	0	NA	Intergenic	L3|LINE|CR1	233805	NM_022840	64863		NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase 4, N6-adenosine	protein-coding
213337	chr7	135466701	135466900	+	0	NA	intron (NM_013316, intron 1 of 10)	Tigger3b|DNA|TcMar-Tigger	43302	NM_001190849	4850		NM_013316	ENSG00000080802	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex subunit 4	protein-coding
59528	chr13	27170901	27173000	+	0	NA	promoter-TSS (NM_182488)	promoter-TSS (NM_182488)	-139	NM_182488	219333		NM_182488	ENSG00000152484	USP12	UBH1|USP12L1	ubiquitin specific peptidase 12	protein-coding
39900	chr11	62507551	62508000	+	0	NA	intron (NM_024060, intron 4 of 5)	AluSz|SINE|Alu	37889	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
14103	chr1	120920501	120921450	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-6861	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
204248	chr7	2560121	2560750	+	0	NA	intron (NM_001287501, intron 1 of 19)	intron (NM_001287501, intron 1 of 19)	1456	NM_001287500	23288		NM_152558	ENSG00000106012	IQCE	1700028P05Rik|PAPA7	IQ motif containing E	protein-coding
185479	chr5	131294371	131294530	+	0	NA	intron (NM_001038702, intron 1 of 4)	L2a|LINE|L2	30397	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
99270	chr17	49744401	49744600	+	0	NA	intron (NM_030802, intron 1 of 7)	AluJr|SINE|Alu	19631	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
157908	chr22	49768371	49768730	+	0	NA	Intergenic	Intergenic	55781	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
88144	chr16	81628871	81629730	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	17952	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
15780	chr1	151193551	151194380	+	0	NA	Intergenic	Intergenic	-3768	NM_005997	6944		NM_005997	ENSG00000163159	VPS72	CFL1|Swc2|TCFL1|YL-1|YL1	vacuolar protein sorting 72 homolog	protein-coding
171385	chr3	196154971	196155330	+	0	NA	intron (NR_034088, intron 2 of 2)	L1PBa|LINE|L1	12514	NR_034088	401109		NM_001001699	ENSG00000224652	LINC00885	-	long intergenic non-protein coding RNA 885	ncRNA
223057	chr8	143382251	143382680	+	0	NA	exon (NM_052924, exon 15 of 15)	exon (NM_052924, exon 15 of 15)	13589	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
63679	chr14	21075071	21075780	+	0	NA	exon (NM_018071, exon 4 of 24)	exon (NM_018071, exon 4 of 24)	-4553	NM_001282211	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
113080	chr19	8260021	8260280	+	0	NA	intron (NM_024552, intron 10 of 11)	intron (NM_024552, intron 10 of 11)	48208	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
126897	chr2	32364571	32364730	+	0	NA	intron (NM_016252, intron 1 of 73)	intron (NM_016252, intron 1 of 73)	7434	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
2507	chr1	9696821	9697130	+	0	NA	intron (NM_001350234, intron 2 of 23)	AluJr|SINE|Alu	5508	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
203581	chr7	916601	917630	+	0	NA	intron (NM_006869, intron 4 of 10)	intron (NM_006869, intron 4 of 10)	3774	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
232382	chr9	135962871	135963400	+	0	NA	Intergenic	L2c|LINE|L2	-1762	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
64040	chr14	22530151	22530480	+	0	NA	Intergenic	Intergenic	26747	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
147527	chr20	59269371	59269530	+	0	NA	Intergenic	Intergenic	-31161	NM_207032	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
178315	chr4	145609821	145610100	+	0	NA	Intergenic	Intergenic	-9425	NM_001375644	166785		NM_172250	ENSG00000151611	MMAA	cblA	metabolism of cobalamin associated A	protein-coding
38952	chr11	47523321	47524650	+	0	NA	promoter-TSS (NM_001172639)	promoter-TSS (NM_001172639)	-154	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
27804	chr10	35667221	35667530	+	0	NA	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	-25941	NM_031866	8325		NM_031866	ENSG00000177283	FZD8	FZ-8|hFZ8	frizzled class receptor 8	protein-coding
182877	chr5	69912671	69912830	+	0	NA	intron (NR_029426, intron 4 of 9).2	AluJr|SINE|Alu	-8730	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
34567	chr10	133226401	133227030	+	0	NA	TTS (NM_152643)	TTS (NM_152643)	-3502	NM_003577	8433		NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
157658	chr22	46183671	46184030	+	0	NA	intron (NM_001362872, intron 3 of 8)	intron (NM_001362872, intron 3 of 8)	33055	NM_001362873	5465		NM_005036	ENSG00000186951	PPARA	NR1C1|PPAR|PPAR-alpha|PPARalpha|hPPAR	peroxisome proliferator activated receptor alpha	protein-coding
68561	chr14	89393321	89393580	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	23783	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
124633	chr2	1744121	1744750	+	0	NA	promoter-TSS (NM_012293)	promoter-TSS (NM_012293)	80	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
95202	chr17	35237201	35237400	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-5772	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
190494	chr5	180354751	180355450	+	0	NA	Intergenic	Intergenic	-1764	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
108553	chr18	74623301	74623700	+	0	NA	intron (NM_001384475, intron 1 of 8)	intron (NM_001384475, intron 1 of 8)	-7463	NM_001146189	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
141874	chr20	709671	710030	+	0	NA	Intergenic	Intergenic	-34048	NM_033129	85508		NM_033129	ENSG00000215397	SCRT2	ZNF898B	scratch family transcriptional repressor 2	protein-coding
184840	chr5	111508921	111509800	+	0	NA	intron (NR_131754, intron 1 of 4)	intron (NR_131754, intron 1 of 4)	-2866	NR_040093	100505678		NR_040093	ENSG00000246859	STARD4-AS1	-	STARD4 antisense RNA 1	ncRNA
31309	chr10	92644521	92644930	+	0	NA	intron (NM_004523, intron 17 of 21)	intron (NM_004523, intron 17 of 21)	-45230	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
35301	chr11	1017801	1018350	+	0	NA	exon (NM_005961, exon 31 of 33)	exon (NM_005961, exon 31 of 33)	18643	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
184375	chr5	98767921	98768490	+	0	NA	promoter-TSS (NM_001366510)	promoter-TSS (NM_001366510)	-427	NM_001366510	285704		NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule BMP co-receptor b	protein-coding
2805	chr1	10960671	10961380	+	0	NA	intron (NM_001366227, intron 3 of 10)	intron (NM_001366227, intron 3 of 10)	5662	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
46067	chr11	122745971	122746680	+	0	NA	intron (NM_032873, intron 1 of 13)	CR1_Mam|LINE|CR1	90603	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
50499	chr12	47804771	47804930	+	0	NA	intron (NR_160436, intron 1 of 25)	intron (NR_160436, intron 1 of 25)	15053	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
231554	chr9	131482821	131483280	+	0	NA	intron (NM_013318, intron 22 of 31)	intron (NM_013318, intron 22 of 31)	-2615	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
222263	chr8	133284571	133285200	+	0	NA	intron (NM_001374844, intron 1 of 15)	intron (NM_001374844, intron 1 of 15)	11805	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
157371	chr22	44708371	44708730	+	0	NA	intron (NM_181334, intron 1 of 14)	intron (NM_181334, intron 1 of 14)	6346	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
134028	chr2	131048221	131048480	+	0	NA	3' UTR (NM_001009993, exon 7 of 7)	3' UTR (NM_001009993, exon 7 of 7)	44812	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
67904	chr14	74579251	74580430	+	0	NA	intron (NM_000428, intron 3 of 35)	MIRc|SINE|MIR	32397	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
72501	chr15	33092021	33092480	+	0	NA	intron (NM_001277313, intron 4 of 20)	intron (NM_001277313, intron 4 of 20)	-24076	NM_001103184	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
205624	chr7	22504571	22504750	+	0	NA	Intergenic	Intergenic	-4378	NM_207342	256227		NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
35972	chr11	2852721	2853080	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	8669	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
114909	chr19	13937571	13938030	+	0	NA	exon (NM_001146255, exon 2 of 6)	exon (NM_001146255, exon 2 of 6)	617	NM_001370095	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
224567	chr9	19473651	19473750	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	64691	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
138446	chr2	206158671	206160500	+	0	NA	promoter-TSS (NM_001959)	promoter-TSS (NM_001959)	-9	NM_021121	1933		NM_001959	ENSG00000114942	EEF1B2	EEF1B|EEF1B1|EF1B	eukaryotic translation elongation factor 1 beta 2	protein-coding
147845	chr20	62799001	62799500	+	0	NA	intron (NR_136405, intron 4 of 4)	intron (NR_136405, intron 4 of 4)	2777	NR_136405	55257		NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG domain binding protein	protein-coding
147370	chr20	58408721	58409500	+	0	NA	intron (NM_001195677, intron 1 of 2)	L2a|LINE|L2	19881	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
201961	chr6	152160401	152160630	+	0	NA	intron (NM_033071, intron 130 of 145)	HAL1|LINE|L1	7772	NM_001347702	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
53887	chr12	70365351	70367680	+	0	NA	5' UTR (NM_014505, exon 1 of 3)	5' UTR (NM_014505, exon 1 of 3)	225	NM_014505	27345		NM_014505	ENSG00000135643	KCNMB4	-	potassium calcium-activated channel subfamily M regulatory beta subunit 4	protein-coding
114659	chr19	13055201	13055400	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	30521	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
47114	chr12	676721	677250	+	0	NA	Intergenic	Intergenic	-13540	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
74485	chr15	59999171	59999750	+	0	NA	Intergenic	Intergenic	-4851	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
56503	chr12	116279901	116280100	+	0	NA	Intergenic	Intergenic	-2307	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
211682	chr7	106525671	106525830	+	0	NA	Intergenic	Intergenic	135408	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
167267	chr3	128611621	128612200	+	0	NA	Intergenic	Intergenic	-35824	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
97449	chr17	43661871	43662030	+	0	NA	promoter-TSS (NM_001040002)	promoter-TSS (NM_001040002)	-28	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
7974	chr1	37851721	37852150	+	0	NA	intron (NM_005955, intron 2 of 10)	(CTCA)n|Simple_repeat|Simple_repeat	7657	NM_005955	4520		NM_005955	ENSG00000188786	MTF1	MTF-1|ZRF	metal regulatory transcription factor 1	protein-coding
20840	chr1	201703971	201704400	+	0	NA	intron (NR_046696, intron 2 of 2)	intron (NR_046696, intron 2 of 2)	-15323	NR_049823	100847050		NR_049823	ENSG00000264802	MIR5191	-	microRNA 5191	ncRNA
28223	chr10	45362351	45362730	+	0	NA	Intergenic	L1PA6|LINE|L1	-11626	NM_001256154	240		NM_000698	ENSG00000012779	ALOX5	5-LO|5-LOX|5LPG|LOG5	arachidonate 5-lipoxygenase	protein-coding
205723	chr7	23480301	23480700	+	0	NA	Intergenic	AluSx|SINE|Alu	-9888	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
230756	chr9	128895601	128896050	+	0	NA	intron (NM_019594, intron 2 of 3)	intron (NM_019594, intron 2 of 3)	-13302	NM_001352989	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
25206	chr10	5707551	5707850	+	0	NA	intron (NM_017782, intron 1 of 20)	intron (NM_017782, intron 1 of 20)	22862	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
144143	chr20	34026021	34026630	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-22794	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
202914	chr6	160071021	160071280	+	0	NA	intron (NM_000876, intron 31 of 47)	intron (NM_000876, intron 31 of 47)	-21932	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
214002	chr7	143007771	143008330	+	0	NA	intron (NM_001363538, intron 9 of 11)	intron (NM_001363538, intron 9 of 11)	19082	NM_001001658	135924		NM_001001658	ENSG00000179468	OR9A2	-	olfactory receptor family 9 subfamily A member 2	protein-coding
76143	chr15	72611171	72611330	+	0	NA	intron (NR_135685, intron 2 of 2)	intron (NR_135685, intron 2 of 2)	24033	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
19392	chr1	174068001	174068260	+	0	NA	Intergenic	HAL1|LINE|L1	-45773	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
1418	chr1	2575601	2576150	+	0	NA	intron (NR_121638, intron 1 of 3)	intron (NR_121638, intron 1 of 3)	9340	NR_121638	100996583		NR_121638	ENSG00000228037	LOC100996583	-	uncharacterized LOC100996583	ncRNA
52848	chr12	57096071	57097180	+	0	NA	exon (NM_001178081, exon 20 of 20)	exon (NM_001178081, exon 20 of 20)	7511	NM_005967	4665		NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding
215258	chr7	156951271	156951930	+	0	NA	intron (NM_138400, intron 1 of 10)	intron (NM_138400, intron 1 of 10)	1888	NM_001353366	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
193828	chr6	31490351	31490650	+	0	NA	intron (NR_149132, intron 1 of 1)	intron (NR_149132, intron 1 of 1)	4294	NR_149132	102725068		NR_149132	ENSG00000286940	MICB-DT	TCONS_00012692	MICB divergent transcript	ncRNA
177533	chr4	118729771	118730150	+	0	NA	intron (NM_014822, intron 21 of 22)	intron (NM_014822, intron 21 of 22)	44568	NM_020961	57721		NM_020961	ENSG00000145388	METTL14	hMETTL14	methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit	protein-coding
201855	chr6	150335171	150335330	+	0	NA	Intergenic	Intergenic	-33762	NM_203395	389434		NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
198103	chr6	90292101	90292500	+	0	NA	intron (NM_021813, intron 1 of 8)	MIRb|SINE|MIR	4543	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
218612	chr8	56069521	56069880	+	0	NA	intron (NM_001146227, intron 5 of 5)	intron (NM_001146227, intron 5 of 5)	4201	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
132983	chr2	111496371	111496530	+	0	NA	Intergenic	Intergenic	-1289	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
195188	chr6	36039071	36039480	+	0	NA	intron (NM_139014, intron 1 of 10)	UCON105|Unknown|Unknown	11467	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
3661	chr1	16411171	16411330	+	0	NA	intron (NM_001353349, intron 2 of 10)	AluJr|SINE|Alu	26174	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
216547	chr8	21812171	21812500	+	0	NA	Intergenic	Intergenic	-23460	NM_001165038	2675		NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
54572	chr12	92364851	92364950	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-56631	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
52141	chr12	54216601	54218750	+	0	NA	Intergenic	Intergenic	13801	NR_039851	100616400		NR_039851	ENSG00000283803	MIR3198-2	mir-3198-2	microRNA 3198-2	ncRNA
189555	chr5	174724321	174724980	+	0	NA	promoter-TSS (NM_001363626)	promoter-TSS (NM_001363626)	68	NM_001363626	4488		NM_002449	ENSG00000120149	MSX2	CRS2|FPP|HOX8|MSH|PFM|PFM1	msh homeobox 2	protein-coding
199291	chr6	111984971	111985650	+	0	NA	Intergenic	Intergenic	-68794	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
132212	chr2	102187371	102188060	+	0	NA	intron (NM_001351446, intron 1 of 11)	CpG	401	NM_001351446	8808		NM_003854	ENSG00000115598	IL1RL2	IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2	interleukin 1 receptor like 2	protein-coding
224710	chr9	21443351	21443450	+	0	NA	Intergenic	AluY|SINE|Alu	2961	NM_024013	3439		NM_024013	ENSG00000197919	IFNA1	IFL|IFN|IFN-ALPHA|IFN-alphaD|IFNA13|IFNA@|leIF D	interferon alpha 1	protein-coding
122180	chr19	48913101	48914250	+	0	NA	intron (NM_006184, intron 7 of 12)	intron (NM_006184, intron 7 of 12)	5216	NR_046633	100874085		NR_046633	ENSG00000235191	NUCB1-AS1	-	NUCB1 antisense RNA 1	ncRNA
192287	chr6	20529041	20529600	+	0	NA	Intergenic	Intergenic	-5137	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
117602	chr19	21890021	21890300	+	0	NA	Intergenic	LTR13|LTR|ERVK	-38092	NM_001256653	7594		NM_003423	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
180526	chr5	14549301	14549500	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-32392	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
173557	chr4	10091101	10091300	+	0	NA	intron (NM_005112, intron 2 of 11)	intron (NM_005112, intron 2 of 11)	-12508	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
222686	chr8	141264471	141264630	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	9983	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
145548	chr20	44204421	44204830	+	0	NA	intron (NM_016470, intron 2 of 3)	L1PA16|LINE|L1	6146	NM_016470	51526		NM_016470	ENSG00000132823	OSER1	C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1	oxidative stress responsive serine rich 1	protein-coding
120703	chr19	45173871	45174230	+	0	NA	intron (NM_001270891, intron 1 of 5)	intron (NM_001270891, intron 1 of 5)	4187	NM_024108	79090		NM_024108	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex subunit 6A	protein-coding
23961	chr1	235156851	235157150	+	0	NA	intron (NR_144491, intron 2 of 9)	intron (NR_144491, intron 2 of 9)	4250	NR_027762	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
170863	chr3	192744721	192744980	+	0	NA	Intergenic	L1PA2|LINE|L1	-17309	NM_001377293	2257		NM_004113	ENSG00000114279	FGF12	DEE47|EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding
65792	chr14	54627501	54628830	+	0	NA	intron (NM_015589, intron 2 of 12)	intron (NM_015589, intron 2 of 12)	60553	NM_001161576	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
47535	chr12	4273401	4275050	+	0	NA	exon (NM_001759, exon 1 of 5)	exon (NM_001759, exon 1 of 5)	463	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
181623	chr5	45696121	45696430	+	0	NA	5' UTR (NM_021072, exon 1 of 8)	5' UTR (NM_021072, exon 1 of 8)	105	NM_021072	348980		NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|DEE24|EIEE24|GEFSP10|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
166941	chr3	125144251	125144550	+	0	NA	intron (NM_024628, intron 5 of 13)	intron (NM_024628, intron 5 of 13)	7152	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
13334	chr1	113798901	113799300	+	0	NA	intron (NM_018364, intron 1 of 6)	L2c|LINE|L2	13376	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
12854	chr1	110080371	110080730	+	0	NA	Intergenic	Intergenic	-2138	NR_126382	104355139		NR_126382	ENSG00000258673	LINC01397	-	long intergenic non-protein coding RNA 1397	ncRNA
90927	chr17	2605221	2605480	+	0	NA	intron (NM_000430, intron 1 of 10)	intron (NM_000430, intron 1 of 10)	11696	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
86601	chr16	67289051	67289150	+	0	NA	TTS (NM_001100915)	TTS (NM_001100915)	9568	NM_001129729	25894		NM_015432	ENSG00000196155	PLEKHG4	ARHGEF44|PRTPHN1|SCA4	pleckstrin homology and RhoGEF domain containing G4	protein-coding
233015	chr9	137015971	137016130	+	0	NA	exon (NM_001606, exon 22 of 49)	exon (NM_001606, exon 22 of 49)	-11414	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
117952	chr19	33242871	33243230	+	0	NA	Intergenic	L2b|LINE|L2	-17200	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
140428	chr2	233116421	233116680	+	0	NA	intron (NM_001017915, intron 2 of 26).2	AluJb|SINE|Alu	56208	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
14078	chr1	120849051	120849900	+	0	NA	Intergenic	Intergenic	1510	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
189632	chr5	176040301	176040830	+	0	NA	Intergenic	Intergenic	21490	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
194583	chr6	33429301	33430090	+	0	NA	intron (NM_006772, intron 3 of 18).2	intron (NM_006772, intron 3 of 18).2	-8636	NR_049800	100847012		NR_049800	ENSG00000284256	MIR5004	mir-5004	microRNA 5004	ncRNA
10741	chr1	76268501	76268730	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	193869	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
185446	chr5	131255701	131255900	+	0	NA	Intergenic	Intergenic	-8253	NM_001038702	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
106075	chr18	9119571	9119730	+	0	NA	intron (NM_021074, intron 4 of 7)	intron (NM_021074, intron 4 of 7)	16951	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
146257	chr20	48923301	48923580	+	0	NA	intron (NM_006420, intron 1 of 38)	Charlie4z|DNA|hAT-Charlie	1729	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
58587	chr12	132454421	132454880	+	0	NA	Intergenic	Intergenic	-35501	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
164763	chr3	69091401	69092850	+	0	NA	intron (NM_006407, intron 1 of 2)	intron (NM_006407, intron 1 of 2)	7188	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
172733	chr4	2823171	2823530	+	0	NA	intron (NM_001145856, intron 3 of 12)	intron (NM_001145856, intron 3 of 12)	4536	NM_003023	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
212157	chr7	116854321	116854580	+	0	NA	Intergenic	Intergenic	-8137	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
190006	chr5	177475001	177475530	+	0	NA	Intergenic	Intergenic	-1631	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
157877	chr22	49693001	49693200	+	0	NA	Intergenic	Intergenic	-35581	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
181724	chr5	50681601	50682130	+	0	NA	intron (NM_024615, intron 2 of 25)	Tigger15a|DNA|TcMar-Tigger	14451	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
216792	chr8	22538071	22538630	+	0	NA	intron (NM_001243975, intron 12 of 12)	intron (NM_001243975, intron 12 of 12)	-13577	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
105676	chr18	2641451	2642330	+	0	NA	Intergenic	Intergenic	13505	NR_033754	645158		NR_033754	ENSG00000293256	CBX3P2	-	CBX3 pseudogene 2	pseudo
162210	chr3	47016701	47018230	+	0	NA	intron (NR_146158, intron 21 of 21)	intron (NR_146158, intron 21 of 21)	5923	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
203306	chr6	170087371	170088500	+	0	NA	Intergenic	CpG	-72707	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
37384	chr11	17013501	17013900	+	0	NA	intron (NM_175058, intron 3 of 22)	CpG	714	NM_001329630	144100		NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding
182658	chr5	67205971	67206230	+	0	NA	Intergenic	Intergenic	-9301	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
205170	chr7	7465271	7465630	+	0	NA	intron (NM_001037763, intron 15 of 34)	L1HS|LINE|L1	70423	NM_001037763	340267		NM_001037763	ENSG00000215018	COL28A1	COL28	collagen type XXVIII alpha 1 chain	protein-coding
110651	chr19	2242251	2243450	+	0	NA	intron (NM_007165, intron 1 of 8)	intron (NM_007165, intron 1 of 8)	6026	NM_007165	8175		NM_007165	ENSG00000104897	SF3A2	PRP11|PRPF11|SAP62|SF3a66	splicing factor 3a subunit 2	protein-coding
120604	chr19	45025051	45025800	+	0	NA	intron (NM_006509, intron 5 of 10)	intron (NM_006509, intron 5 of 10)	-13620	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
65981	chr14	57202801	57203100	+	0	NA	3' UTR (NM_006544, exon 18 of 18)	3' UTR (NM_006544, exon 18 of 18)	65955	NM_006544	10640		NM_006544	ENSG00000070367	EXOC5	HSEC10|PRO1912|SEC10|SEC10L1|SEC10P	exocyst complex component 5	protein-coding
229975	chr9	126777951	126778050	+	0	NA	Intergenic	MIRb|SINE|MIR	-27006	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
61989	chr13	80339951	80340330	+	0	NA	promoter-TSS (NM_001318538)	promoter-TSS (NM_001318538)	-32	NM_001318536	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
237628	chrX	124016901	124017300	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	55394	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
11563	chr1	91402071	91402230	+	0	NA	intron (NM_001017975, intron 1 of 38)	MamRep564|Unknown|Unknown	2585	NR_165455	164045		NM_001017975	ENSG00000162669	HFM1	MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase	helicase for meiosis 1	protein-coding
8531	chr1	41016971	41017130	+	0	NA	non-coding (NR_037868, exon 1 of 4)	non-coding (NR_037868, exon 1 of 4)	2460	NR_037868	100507178		NR_037868	ENSG00000281207	SLFNL1-AS1	-	SLFNL1 antisense RNA 1	ncRNA
109428	chr19	705251	705350	+	0	NA	Intergenic	Intergenic	-3635	NM_001040134	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
94027	chr17	27218821	27219400	+	0	NA	Intergenic	Intergenic	74886	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
172634	chr4	2534151	2534550	+	0	NA	Intergenic	AluY|SINE|Alu	-1025	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
51824	chr12	53447071	53447230	+	0	NA	TTS (NM_018457)	TTS (NM_018457)	-4952	NM_001128914	5094		NM_005016	ENSG00000197111	PCBP2	HNRNPE2|HNRPE2|hnRNP-E2	poly(rC) binding protein 2	protein-coding
164664	chr3	66928371	66928530	+	0	NA	Intergenic	L1M4|LINE|L1	-69857	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
18280	chr1	161121271	161121430	+	0	NA	TTS (NM_001185094)	TTS (NM_001185094)	3232	NM_001185094	4817		NM_005600	ENSG00000158793	NIT1	-	nitrilase 1	protein-coding
227339	chr9	89459851	89460150	+	0	NA	intron (NM_001371194, intron 1 of 15)	MER92B|LTR|ERV1	19890	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
10978	chr1	84387701	84387930	+	0	NA	Intergenic	Intergenic	-3014	NR_003927	391051		NR_003927		UOX	UOXP|URICASE	urate oxidase (pseudogene)	pseudo
182908	chr5	70414801	70416030	+	0	NA	promoter-TSS (NM_001376001)	promoter-TSS (NM_001376001)	41	NM_001515	2966		NM_001515	ENSG00000145736	GTF2H2	BTF2|BTF2 p44|BTF2P44|T-BTF2P44|TFIIH|p44	general transcription factor IIH subunit 2	protein-coding
120954	chr19	45696851	45696950	+	0	NA	intron (NM_017659, intron 3 of 6)	AluSz|SINE|Alu	4234	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
143894	chr20	32576851	32577150	+	0	NA	intron (NM_001256798, intron 1 of 10)	MIRb|SINE|MIR	8333	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
110901	chr19	2734251	2734750	+	0	NA	TTS (NM_213568)	TTS (NM_213568)	5517	NM_144564	29985		NM_144564	ENSG00000141873	SLC39A3	ZIP-3|ZIP3	solute carrier family 39 member 3	protein-coding
217059	chr8	23409921	23410700	+	0	NA	Intergenic	Intergenic	-6190	NM_002318	4017		NM_002318	ENSG00000134013	LOXL2	LOR|LOR2|WS9-14	lysyl oxidase like 2	protein-coding
218966	chr8	61652821	61653080	+	0	NA	intron (NM_032466, intron 4 of 13)	intron (NM_032466, intron 4 of 13)	36861	NM_020164	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
61238	chr13	49799501	49799800	+	0	NA	Intergenic	Intergenic	-6968	NM_002267	3839		NM_002267	ENSG00000102753	KPNA3	IPOA4|SPG88|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
31107	chr10	89308971	89309130	+	0	NA	3' UTR (NM_001547, exon 2 of 2)	3' UTR (NM_001547, exon 2 of 2)	7004	NM_001547	3433		NM_001547	ENSG00000119922	IFIT2	G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54|ISG-54 K|ISG-54K|ISG54|P54|cig42	interferon induced protein with tetratricopeptide repeats 2	protein-coding
4806	chr1	23595151	23595650	+	0	NA	Intergenic	AluY|SINE|Alu	-31934	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
213516	chr7	139073551	139074150	+	0	NA	intron (NM_020119, intron 7 of 12)	intron (NM_020119, intron 7 of 12)	-29693	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
26057	chr10	12594121	12594950	+	0	NA	intron (NM_153498, intron 2 of 10)	intron (NM_153498, intron 2 of 10)	15782	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA
43248	chr11	75525301	75526430	+	0	NA	promoter-TSS (NM_001351168)	promoter-TSS (NM_001351168)	76	NM_030792	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
148071	chr20	63285521	63286280	+	0	NA	promoter-TSS (NR_036220)	promoter-TSS (NR_036220)	-908	NR_036220	100422945		NR_036220	ENSG00000266104	MIR4326	mir-4326	microRNA 4326	ncRNA
97813	chr17	44848501	44848900	+	0	NA	intron (NR_073504, intron 1 of 1)	intron (NR_073504, intron 1 of 1)	817	NM_016438	51751		NM_016438	ENSG00000131097	HIGD1B	CLST11240|CLST11240-15	HIG1 hypoxia inducible domain family member 1B	protein-coding
99750	chr17	50947371	50947730	+	0	NA	Intergenic	Intergenic	-79572	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
213831	chr7	141649971	141650230	+	0	NA	intron (NM_018238, intron 14 of 15)	intron (NM_018238, intron 14 of 15)	52066	NM_001080392	57189		NM_001080392	ENSG00000257093	DENND11	KIAA1147|LCHN|PRO2561	DENN domain containing 11	protein-coding
69380	chr14	94032751	94033200	+	0	NA	intron (NM_023112, intron 1 of 5)	AluSg|SINE|Alu	6635	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
13653	chr1	116539951	116540600	+	0	NA	intron (NR_026665, intron 2 of 5)	intron (NR_026665, intron 2 of 5)	19836	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
25188	chr10	5606951	5607060	+	0	NA	Intergenic	Intergenic	-10887	NR_134491	105376382		NR_134491	ENSG00000242147	LASTR	LINC02657	lncRNA associated with SART3 regulation of splicing	ncRNA
145989	chr20	46368651	46369180	+	0	NA	exon (NM_133171, exon 21 of 22)	exon (NM_133171, exon 21 of 22)	-4457	NM_001281458	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
234936	chrX	38328421	38328900	+	0	NA	Intergenic	L2c|LINE|L2	-1151	NM_001367249	6103		NM_000328	ENSG00000156313	RPGR	COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15	retinitis pigmentosa GTPase regulator	protein-coding
19022	chr1	169662221	169662480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-32226	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
121819	chr19	47939121	47939750	+	0	NA	promoter-TSS (NR_024218)	promoter-TSS (NR_024218)	-106	NR_024218	100170219		NR_024218		SNAR-C4	-	small NF90 (ILF3) associated RNA C4	snRNA
82980	chr16	21957951	21958250	+	0	NA	intron (NM_003366, intron 3 of 13)	MLT1C|LTR|ERVL-MaLR	4739	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
182371	chr5	60688151	60688550	+	0	NA	intron (NM_001145208, intron 1 of 9)	intron (NM_001145208, intron 1 of 9)	11816	NM_001145208	55789		NM_018369	ENSG00000035499	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
217353	chr8	27827671	27828050	+	0	NA	intron (NM_001278945, intron 3 of 7)	intron (NM_001278945, intron 3 of 7)	9957	NM_001278945	55872		NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
151524	chr21	46438421	46438680	+	0	NA	intron (NM_006031, intron 41 of 46)	intron (NM_006031, intron 41 of 46)	-20341	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
142727	chr20	10036071	10036230	+	0	NA	intron (NM_022096, intron 2 of 10)	intron (NM_022096, intron 2 of 10)	1163	NM_198798	63926		NM_022096	ENSG00000132623	ANKEF1	ANKRD5	ankyrin repeat and EF-hand domain containing 1	protein-coding
218998	chr8	63169921	63170330	+	0	NA	intron (NM_001277816, intron 2 of 3)	intron (NM_001277816, intron 2 of 3)	1122	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
126391	chr2	27572271	27572750	+	0	NA	Intergenic	Intergenic	-4012	NM_032266	84226		NM_032266	ENSG00000221843	SPATA31H1	C2orf16	SPATA31 subfamily H member 1	protein-coding
128889	chr2	64126021	64126280	+	0	NA	intron (NM_020651, intron 1 of 6)	intron (NM_020651, intron 1 of 6)	18270	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
172116	chr4	1165421	1165680	+	0	NA	Intergenic	Intergenic	7033	NM_012445	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
167139	chr3	127791071	127791230	+	0	NA	intron (NM_001003794, intron 2 of 7)	intron (NM_001003794, intron 2 of 7)	31732	NM_007283	11343		NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
21889	chr1	207803851	207804600	+	0	NA	intron (NR_135299, intron 5 of 5)	intron (NR_135299, intron 5 of 5)	-1702	NR_029518	407025		NR_029518	ENSG00000284203	MIR29B2	MIRN29B2	microRNA 29b-2	ncRNA
25881	chr10	11260171	11260530	+	0	NA	intron (NM_001326346, intron 4 of 11)	intron (NM_001326346, intron 4 of 11)	84324	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
98702	chr17	47941191	47942950	+	0	NA	promoter-TSS (NR_103856)	promoter-TSS (NR_103856)	499	NM_018129	55163		NM_018129	ENSG00000108439	PNPO	HEL-S-302|PDXPO	pyridoxamine 5'-phosphate oxidase	protein-coding
227033	chr9	83960401	83960950	+	0	NA	Intergenic	Intergenic	-3689	NM_001317997	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
87976	chr16	80570921	80571180	+	0	NA	intron (NR_104666, intron 1 of 2)	intron (NR_104666, intron 1 of 2)	-1440	NR_104665	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
158070	chr22	49958801	49959250	+	0	NA	Intergenic	Intergenic	-1747	NM_001001852	415116		NM_001001852	ENSG00000198355	PIM3	pim-3	Pim-3 proto-oncogene, serine/threonine kinase	protein-coding
110378	chr19	1918851	1919150	+	0	NA	intron (NM_079834, intron 5 of 6)	CpG-13123	13601	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
74296	chr15	58043301	58043500	+	0	NA	intron (NM_170696, intron 1 of 11)	intron (NM_170696, intron 1 of 11)	-21825	NR_147215	283665		NR_147215		ALDH1A2-AS1	-	ALDH1A2 antisense RNA 1	ncRNA
80369	chr16	2526121	2526680	+	0	NA	intron (NM_001330449, intron 3 of 10)	intron (NM_001330449, intron 3 of 10)	5008	NM_001048212	752014		NM_001048212	ENSG00000205923	CEMP1	CP-23|CP23	cementum protein 1	protein-coding
118148	chr19	35009051	35009350	+	0	NA	exon (NM_001136199, exon 2 of 18)	exon (NM_001136199, exon 2 of 18)	8877	NM_001136199	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
63400	chr13	114072671	114073530	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	4855	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
138479	chr2	206981771	206981930	+	0	NA	Intergenic	Intergenic	42332	NM_173077	130749		NM_173077	ENSG00000144410	CPO	-	carboxypeptidase O	protein-coding
94199	chr17	28578101	28578500	+	0	NA	intron (NM_006461, intron 21 of 23)	intron (NM_006461, intron 21 of 23)	-1405	NM_005165	230		NM_005165	ENSG00000109107	ALDOC	ALDC	aldolase, fructose-bisphosphate C	protein-coding
208477	chr7	67104971	67105130	+	0	NA	intron (NM_018264, intron 12 of 15)	MLT1H2|LTR|ERVL-MaLR	9347	NR_039794	100616331		NR_039794	ENSG00000264494	MIR4650-2	-	microRNA 4650-2	ncRNA
63168	chr13	113668551	113668850	+	0	NA	intron (NM_002929, intron 1 of 6)	intron (NM_002929, intron 1 of 6)	1481	NM_002929	6011		NM_002929	ENSG00000185974	GRK1	GPRK1|RHOK|RK	G protein-coupled receptor kinase 1	protein-coding
75932	chr15	70234371	70234790	+	0	NA	Intergenic	Intergenic	-136663	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
98348	chr17	46291151	46291700	+	0	NA	intron (NM_001352769, intron 4 of 4)	L1MEi|LINE|L1	-3706	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
150726	chr21	43744251	43744350	+	0	NA	intron (NM_001331030, intron 3 of 9)	intron (NM_001331030, intron 3 of 9)	2814	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
90715	chr17	1870001	1871050	+	0	NA	intron (NM_001355120, intron 5 of 16)	L1MB3|LINE|L1	40520	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
32219	chr10	101810971	101811550	+	0	NA	intron (NM_001142434, intron 3 of 14)	AluSx|SINE|Alu	7184	NM_012215	10724		NM_012215	ENSG00000198408	OGA	MEA5|MGEA5|NCOAT	O-GlcNAcase	protein-coding
42287	chr11	68335671	68336030	+	0	NA	intron (NM_002335, intron 1 of 22)	Tigger17a|DNA|TcMar-Tigger	23259	NM_002335	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
64611	chr14	30627551	30627650	+	0	NA	intron (NM_001257376, intron 1 of 22)	AluSp|SINE|Alu	5281	NM_001257376	23256		NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
72429	chr15	31482721	31484230	+	0	NA	exon (NM_001382637, exon 13 of 13)	exon (NM_001382637, exon 13 of 13)	156640	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
63861	chr14	21703901	21704500	+	0	NA	Intergenic	Intergenic	-33183	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
25723	chr10	9016771	9017330	+	0	NA	Intergenic	MIRc|SINE|MIR	119061	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
174067	chr4	26935501	26935780	+	0	NA	intron (NM_020860, intron 2 of 11)	MER5A|DNA|hAT-Charlie	74799	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
162037	chr3	46695021	46696930	+	0	NA	intron (NM_001370524, intron 1 of 3)	intron (NM_001370524, intron 1 of 3)	2197	NM_001370524	259236		NM_147196	ENSG00000181585	TMIE	DFNB6	transmembrane inner ear	protein-coding
90674	chr17	1714001	1714280	+	0	NA	promoter-TSS (NR_029494).2	promoter-TSS (NR_029494).2	-153	NR_029494	407004		NR_029494	ENSG00000283824	MIR22	MIRN22|hsa-mir-22|miR-22	microRNA 22	ncRNA
28706	chr10	61438671	61438900	+	0	NA	intron (NM_178505, intron 1 of 5)	intron (NM_178505, intron 1 of 5)	-13854	NR_120643	101928781		NR_120643		TMEM26-AS1	-	TMEM26 antisense RNA 1	ncRNA
48689	chr12	10594271	10594430	+	0	NA	intron (NR_028045, intron 4 of 6)	L1MA10|LINE|L1	5485	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
38617	chr11	46335821	46336080	+	0	NA	intron (NM_201532, intron 1 of 30)	intron (NM_201532, intron 1 of 30)	3024	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
142170	chr20	2850001	2850200	+	0	NA	intron (NM_022575, intron 1 of 23)	AluSq|SINE|Alu	-8949	NM_001271168	64773		NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
235643	chrX	48508421	48509780	+	0	NA	promoter-TSS (NM_203474)	promoter-TSS (NM_203474)	108	NM_001282167	64840		NM_022825	ENSG00000102312	PORCN	DHOF|FODH|MG61|PORC|PPN	porcupine O-acyltransferase	protein-coding
58898	chr13	19619001	19619200	+	0	NA	Intergenic	Intergenic	-14559	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
133494	chr2	119941451	119941550	+	0	NA	intron (NM_002830, intron 15 of 26)	intron (NM_002830, intron 15 of 26)	-71577	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
216270	chr8	12485201	12485500	+	0	NA	intron (NR_040092, intron 4 of 5)	LTR2C|LTR|ERV1	48337	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
191131	chr6	4065871	4066700	+	0	NA	Intergenic	Intergenic	12852	NM_173563	222826		NM_173563	ENSG00000145975	FAM217A	C6orf146	family with sequence similarity 217 member A	protein-coding
200985	chr6	139375301	139376650	+	0	NA	Intergenic	Intergenic	-1327	NM_006079	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
217965	chr8	38303301	38303530	+	0	NA	intron (NM_023034, intron 14 of 23)	intron (NM_023034, intron 14 of 23)	-34183	NM_001354454	84513		NM_032483	ENSG00000147535	PLPP5	DPPL1|HTPAP|PPAPDC1B	phospholipid phosphatase 5	protein-coding
210802	chr7	100865571	100866650	+	0	NA	TTS (NM_001267814)	TTS (NM_001267814)	-1277	NM_003302	7205		NM_003302	ENSG00000087077	TRIP6	OIP-1|OIP1|TRIP-6|TRIP6i2|ZRP-1	thyroid hormone receptor interactor 6	protein-coding
12077	chr1	99374351	99374450	+	0	NA	Intergenic	LTR71A|LTR|ERV1	109908	NM_014839	9890		NM_014839	ENSG00000117600	PLPPR4	LPPR4|LPR4|PHP1|PRG-1|PRG1	phospholipid phosphatase related 4	protein-coding
70905	chr14	104077801	104078430	+	0	NA	Intergenic	LTR41C|LTR|ERVL	-7585	NM_001080464	374569		NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT|LYSOLP|hASNase1	asparaginase	protein-coding
25325	chr10	6227971	6228930	+	0	NA	intron (NM_001314063, intron 15 of 15)	intron (NM_001314063, intron 15 of 15)	25518	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
39553	chr11	61122171	61122330	+	0	NA	intron (NM_001346456, intron 6 of 10)	intron (NM_001346456, intron 6 of 10)	19761	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
96011	chr17	39225651	39226530	+	0	NA	promoter-TSS (NM_198993)	promoter-TSS (NM_198993)	-145	NM_001351360	342667		NM_198993	ENSG00000141750	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
86139	chr16	57689451	57690380	+	0	NA	TTS (NM_001308360)	TTS (NM_001308360)	-4891	NM_001289162	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
90313	chr17	1108521	1110300	+	0	NA	promoter-TSS (NM_001092)	promoter-TSS (NM_001092)	-308	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
152171	chr22	20084551	20085130	+	0	NA	promoter-TSS (NR_037412)	promoter-TSS (NR_037412)	-906	NR_037412	100500860		NR_037412	ENSG00000284140	MIR3618	-	microRNA 3618	ncRNA
25473	chr10	6919721	6920500	+	0	NA	Intergenic	Intergenic	140512	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
72779	chr15	39920601	39921650	+	0	NA	promoter-TSS (NM_007223)	promoter-TSS (NM_007223)	-859	NM_007223	11245		NM_007223	ENSG00000166073	GPR176	HB-954	G protein-coupled receptor 176	protein-coding
231426	chr9	131235301	131235900	+	0	NA	TTS (NM_005085)	TTS (NM_005085)	40910	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
58191	chr12	125114651	125114750	+	0	NA	intron (NM_023928, intron 9 of 17)	intron (NM_023928, intron 9 of 17)	49265	NM_001319839	65985		NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
130828	chr2	87070601	87071300	+	0	NA	intron (NR_026846, intron 1 of 10)	intron (NR_026846, intron 1 of 10)	5463	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
182873	chr5	69872651	69872750	+	0	NA	intron (NR_029426, intron 1 of 9).2	LTR16A|LTR|ERVL	27888	NR_029426	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
195400	chr6	36773171	36773330	+	0	NA	intron (NM_001376889, intron 11 of 21)	intron (NM_001376889, intron 11 of 21)	-7455	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
13092	chr1	111599871	111600300	+	0	NA	non-coding (NR_034126, exon 5 of 5)	non-coding (NR_034126, exon 5 of 5)	8233	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
227804	chr9	93183171	93183330	+	0	NA	Intergenic	Intergenic	-1680	NM_001282394	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
202548	chr6	158645781	158647130	+	0	NA	Intergenic	AluJo|SINE|Alu	-1712	NM_001291602	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
217851	chr8	37764801	37765200	+	0	NA	intron (NM_007198, intron 1 of 7)	AluSp|SINE|Alu	2355	NM_007198	11212		NM_007198	ENSG00000147471	PLPBP	EPEO1|EPVB6D|PROSC	pyridoxal phosphate binding protein	protein-coding
124637	chr2	1780201	1780650	+	0	NA	Intergenic	Intergenic	-35910	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
171206	chr3	195720871	195721700	+	0	NA	intron (NM_020790, intron 1 of 5)	intron (NM_020790, intron 1 of 5)	307	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
57573	chr12	122248071	122248430	+	0	NA	intron (NM_001351018, intron 6 of 12)	intron (NM_001351018, intron 6 of 12)	18244	NM_022916	65082		NM_022916	ENSG00000139719	VPS33A	MPSPS	VPS33A core subunit of CORVET and HOPS complexes	protein-coding
45050	chr11	117047501	117047900	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJo|SINE|Alu	50728	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
235744	chrX	48944301	48944700	+	0	NA	intron (NM_001136159, intron 1 of 8)	intron (NM_001136159, intron 1 of 8)	13107	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
126893	chr2	32360751	32361130	+	0	NA	intron (NM_016252, intron 1 of 73)	AluSz|SINE|Alu	3724	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
180040	chr5	1065301	1065700	+	0	NA	intron (NM_006598, intron 17 of 23).2	intron (NM_006598, intron 17 of 23).2	-2526	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
147523	chr20	59235451	59235750	+	0	NA	intron (NM_178457, intron 4 of 5)	intron (NM_178457, intron 4 of 5)	-65011	NM_207032	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
221300	chr8	123018771	123019500	+	0	NA	intron (NM_001363963, intron 6 of 6)	intron (NM_001363963, intron 6 of 6)	6637	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
66974	chr14	66395321	66395680	+	0	NA	Intergenic	Intergenic	-90871	NR_110307	440184		NM_001004331	ENSG00000196553	CCDC196	C14orf53|LINC00238|NCRNA00238	coiled-coil domain containing 196	protein-coding
85545	chr16	53129251	53129430	+	0	NA	intron (NM_001308319, intron 1 of 38)	intron (NM_001308319, intron 1 of 38)	-1672	NM_001352127	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
163159	chr3	50161671	50162250	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	2941	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
74005	chr15	52116221	52116950	+	0	NA	3' UTR (NM_006578, exon 11 of 11)	3' UTR (NM_006578, exon 11 of 11)	-3810	NM_001306168	10017		NM_020396	ENSG00000137875	BCL2L10	BCL-B|Boo|Diva|bcl2-L-10	BCL2 like 10	protein-coding
92028	chr17	7478471	7479200	+	0	NA	intron (NM_020899, intron 1 of 3)	intron (NM_020899, intron 1 of 3)	796	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
223053	chr8	143378901	143379400	+	0	NA	intron (NM_052924, intron 7 of 14)	intron (NM_052924, intron 7 of 14)	10274	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
35637	chr11	1839051	1839250	+	0	NA	promoter-TSS (NM_001145829)	promoter-TSS (NM_001145829)	169	NM_003282	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
213333	chr7	135282671	135283100	+	0	NA	Intergenic	Intergenic	50906	NM_182489	346673		NM_182489	ENSG00000146857	STRA8	-	stimulated by retinoic acid 8	protein-coding
43656	chr11	85694401	85694700	+	0	NA	3' UTR (NM_001289610, exon 11 of 11)	3' UTR (NM_001289610, exon 11 of 11)	-8355	NM_152723	220388		NM_152723	ENSG00000179071	CCDC89	-	coiled-coil domain containing 89	protein-coding
78912	chr15	101188051	101188350	+	0	NA	intron (NM_014918, intron 2 of 2)	intron (NM_014918, intron 2 of 2)	63848	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
192698	chr6	26303901	26304500	+	0	NA	Intergenic	MER90a|LTR|ERV1	-18666	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
204328	chr7	2718751	2719480	+	0	NA	3' UTR (NM_133463, exon 7 of 7)	3' UTR (NM_133463, exon 7 of 7)	30913	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
87869	chr16	77675701	77675940	+	0	NA	Intergenic	Intergenic	-46672	NM_001243657	283927		NM_001105663	ENSG00000140876	NUDT7	-	nudix hydrolase 7	protein-coding
26874	chr10	25113151	25113500	+	0	NA	non-coding (NR_120649, exon 1 of 8)	non-coding (NR_120649, exon 1 of 8)	267	NR_120649	101929025		NR_120649	ENSG00000231422	LINC01516	-	long intergenic non-protein coding RNA 1516	ncRNA
40039	chr11	62703051	62703350	+	0	NA	intron (NR_037948, intron 3 of 11)	MER5B|DNA|hAT-Charlie	3115	NM_001130702	26580		NM_032667	ENSG00000168000	BSCL2	GNG3LG|HMN5|HMN5C|HMND13|PELD|SPG17	BSCL2 lipid droplet biogenesis associated, seipin	protein-coding
102082	chr17	74960501	74960950	+	0	NA	intron (NM_030630, intron 6 of 18)	intron (NM_030630, intron 6 of 18)	-9964	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
128081	chr2	47886421	47886680	+	0	NA	intron (NM_001190274, intron 1 of 22)	L1MC4a|LINE|L1	2169	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
125979	chr2	25279151	25279850	+	0	NA	intron (NR_135490, intron 4 of 23)	intron (NR_135490, intron 4 of 23)	-27185	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
224563	chr9	19461851	19462230	+	0	NA	Intergenic	Intergenic	53031	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
82194	chr16	14971651	14972150	+	0	NA	Intergenic	AluSz|SINE|Alu	-2835	NM_001285447	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
48070	chr12	7132721	7133150	+	0	NA	intron (NM_014718, intron 1 of 17)	intron (NM_014718, intron 1 of 17)	2564	NM_014718	9746		NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding
121011	chr19	45784071	45784650	+	0	NA	intron (NM_004943, intron 4 of 4)	intron (NM_004943, intron 4 of 4)	-1870	NM_001081560	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
213039	chr7	131043321	131043980	+	0	NA	intron (NR_109850, intron 3 of 5)	AluSz|SINE|Alu	63380	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
108557	chr18	74798571	74798730	+	0	NA	intron (NM_001384475, intron 4 of 8)	intron (NM_001384475, intron 4 of 8)	167687	NM_001146190	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
42162	chr11	67796171	67796530	+	0	NA	intron (NR_024249, intron 3 of 3)	intron (NR_024249, intron 3 of 3)	8986	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
192666	chr6	26214401	26214680	+	0	NA	Intergenic	MER39|LTR|ERV1	2148	NM_003518	8339		NM_003518	ENSG00000273802	H2BC8	H2B.1A|H2B/a|H2BC10|H2BC4|H2BC6|H2BC7|H2BFA|HIST1H2BG|dJ221C16.8	H2B clustered histone 8	protein-coding
238559	chrX	153798221	153798880	+	0	NA	TTS (NM_006280)	TTS (NM_006280)	3882	NM_006280	6748		NM_006280	ENSG00000180879	SSR4	CDG1Y|TRAPD	signal sequence receptor subunit 4	protein-coding
223359	chr8	143871001	143871200	+	0	NA	exon (NM_031308, exon 2 of 2)	exon (NM_031308, exon 2 of 2)	7367	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
71867	chr15	22360571	22361200	+	0	NA	Intergenic	Intergenic	77141	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
148879	chr21	8450401	8450630	+	0	NA	Intergenic	AluSp|SINE|Alu	9369	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
41566	chr11	66327771	66329180	+	0	NA	Intergenic	Intergenic	7959	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
161100	chr3	38166871	38167030	+	0	NA	intron (NM_005109, intron 1 of 17)	L2b|LINE|L2	1413	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
222267	chr8	133289151	133289250	+	0	NA	intron (NM_001374844, intron 1 of 15)	FLAM_A|SINE|Alu	7490	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
66627	chr14	63761821	63762080	+	0	NA	Intergenic	Intergenic	-33885	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
219740	chr8	81068371	81068530	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	43618	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
225072	chr9	33267501	33267700	+	0	NA	intron (NM_001195536, intron 2 of 6)	intron (NM_001195536, intron 2 of 6)	2551	NM_016410	51510		NM_016410	ENSG00000086065	CHMP5	C9orf83|CGI-34|HSPC177|PNAS-2|SNF7DC2|Vps60	charged multivesicular body protein 5	protein-coding
237182	chrX	107710521	107711800	+	0	NA	Intergenic	Intergenic	5348	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
216543	chr8	21786801	21787330	+	0	NA	intron (NM_001495, intron 1 of 8)	intron (NM_001495, intron 1 of 8)	1810	NM_001165039	2675		NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding
49685	chr12	30757121	30757380	+	0	NA	intron (NR_135046, intron 1 of 1)	L2c|LINE|L2	2176	NR_135046	645485		NR_135046	ENSG00000246331	LOC645485	-	uncharacterized LOC645485	ncRNA
44939	chr11	116775321	116776880	+	0	NA	3' UTR (NM_003904, exon 14 of 14)	3' UTR (NM_003904, exon 14 of 14)	-3102	NM_001159736	84811		NM_032725	ENSG00000137656	BUD13	Cwc26|fSAP71	BUD13 homolog	protein-coding
8833	chr1	43066551	43066850	+	0	NA	Intergenic	Intergenic	-81204	NM_001101376	440585		NM_001101376	ENSG00000186973	CFAP144	FAM183A	cilia and flagella associated protein 144	protein-coding
177537	chr4	118834821	118837300	+	0	NA	promoter-TSS (NM_001318066)	promoter-TSS (NM_001318066)	66	NM_001318066	9871		NM_014822	ENSG00000150961	SEC24D	CLCRP2	SEC24 homolog D, COPII coat complex component	protein-coding
128200	chr2	53966451	53966550	+	0	NA	intron (NM_014614, intron 1 of 46)	AluSz|SINE|Alu	4493	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
198107	chr6	90295901	90296300	+	0	NA	intron (NM_021813, intron 1 of 8)	CpG	743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
186936	chr5	139640351	139640450	+	0	NA	Intergenic	Intergenic	-6899	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
28453	chr10	49184551	49185150	+	0	NA	intron (NM_001288741, intron 1 of 4)	L1ME3G|LINE|L1	3541	NM_001353331	170371		NM_001010863	ENSG00000204161	TMEM273	C10orf128	transmembrane protein 273	protein-coding
202989	chr6	162621451	162621550	+	0	NA	intron (NM_013987, intron 1 of 10)	MLT1H2|LTR|ERVL-MaLR	-105632	NM_152410	135138		NM_152410	ENSG00000112530	PACRG	BUG21|GLUP|HAK005771|PACRG2.1|PARK2CRG|pf12	parkin coregulated	protein-coding
56950	chr12	120482351	120482450	+	0	NA	intron (NM_001037494, intron 1 of 2)	AluY|SINE|Alu	12558	NM_001037494	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
122064	chr19	48711121	48711780	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	5507	NM_182574	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
132987	chr2	111508171	111508330	+	0	NA	Intergenic	Intergenic	-13089	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
134512	chr2	143428321	143428980	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	299231	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
44288	chr11	102313301	102314050	+	0	NA	Intergenic	Intergenic	-3809	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
165431	chr3	98524451	98524930	+	0	NA	Intergenic	Intergenic	-1624	NM_001040199	56650		NM_019895	ENSG00000080822	CLDND1	C3orf4|GENX-3745|Z38	claudin domain containing 1	protein-coding
62242	chr13	98535501	98535700	+	0	NA	intron (NM_001286649, intron 1 of 9)	MIRb|SINE|MIR	-13475	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
16045	chr1	152448171	152448330	+	0	NA	Intergenic	Intergenic	-33987	NM_016190	49860		NM_016190	ENSG00000143536	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
17102	chr1	156149211	156149750	+	0	NA	promoter-TSS (NM_001193300)	promoter-TSS (NM_001193300)	-464	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
7665	chr1	35715271	35717000	+	0	NA	exon (NM_152374, exon 2 of 2)	exon (NM_152374, exon 2 of 2)	776	NM_001348691	127703		NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
30884	chr10	86959351	86959650	+	0	NA	intron (NM_003087, intron 1 of 4)	intron (NM_003087, intron 1 of 4)	901	NM_003087	6623		NM_003087	ENSG00000173267	SNCG	BCSG1|SR	synuclein gamma	protein-coding
167263	chr3	128603701	128604030	+	0	NA	Intergenic	Intergenic	-27779	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
205727	chr7	23487051	23487550	+	0	NA	Intergenic	AluSg|SINE|Alu	-3088	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
170361	chr3	184583421	184584280	+	0	NA	Intergenic	CpG	22065	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
135729	chr2	169452271	169452430	+	0	NA	Intergenic	Intergenic	-27144	NM_152384	129880		NM_152384	ENSG00000163093	BBS5	-	Bardet-Biedl syndrome 5	protein-coding
144147	chr20	34037021	34037680	+	0	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	-11769	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
113932	chr19	10729401	10730130	+	0	NA	intron (NM_001005362, intron 1 of 19)	L1ME3G|LINE|L1	11361	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
63080	chr13	113183521	113184130	+	0	NA	intron (NM_001320657, intron 9 of 13)	intron (NM_001320657, intron 9 of 13)	-24368	NM_001278513	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
131102	chr2	89838021	89838630	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-200418	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
187171	chr5	140635921	140636180	+	0	NA	Intergenic	AluSp|SINE|Alu	-2349	NM_001040021	929		NM_000591	ENSG00000170458	CD14	-	CD14 molecule	protein-coding
164767	chr3	69097251	69098780	+	0	NA	intron (NM_006407, intron 1 of 2)	intron (NM_006407, intron 1 of 2)	13078	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
172737	chr4	2830821	2831080	+	0	NA	intron (NM_001145856, intron 8 of 12)	intron (NM_001145856, intron 8 of 12)	12136	NM_003023	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
13322	chr1	113760651	113761180	+	0	NA	TTS (NR_130896)	TTS (NR_130896)	-1027	NM_001323042	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
220135	chr8	94833521	94834380	+	0	NA	intron (NM_017864, intron 6 of 26)	AluSp|SINE|Alu	10660	NR_073445	55656		NM_017864	ENSG00000164941	INTS8	C8orf52|INT8|NEDCHS	integrator complex subunit 8	protein-coding
113505	chr19	10099851	10099950	+	0	NA	intron (NM_031917, intron 1 of 5)	AluSz6|SINE|Alu	2757	NM_001321411	83854		NM_031917	ENSG00000130812	ANGPTL6	AGF|ARP5	angiopoietin like 6	protein-coding
212153	chr7	116809701	116810150	+	0	NA	Intergenic	Intergenic	-52662	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
162339	chr3	47785551	47786050	+	0	NA	Intergenic	AluSc|SINE|Alu	-3907	NM_003074	6599		NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|HYC5|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
75677	chr15	67824301	67824700	+	0	NA	Intergenic	CpG	-1009	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
177316	chr4	109692301	109692600	+	0	NA	intron (NM_001226, intron 5 of 6)	intron (NM_001226, intron 5 of 6)	10995	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
194587	chr6	33434071	33434230	+	0	NA	intron (NM_006772, intron 5 of 18).2	intron (NM_006772, intron 5 of 18).2	-4181	NR_049800	100847012		NR_049800	ENSG00000284256	MIR5004	mir-5004	microRNA 5004	ncRNA
174369	chr4	38867501	38868400	+	0	NA	promoter-TSS (NR_030300)	promoter-TSS (NR_030300)	-82	NR_030300	693159		NR_030300	ENSG00000207944	MIR574	MIR574-3p|MIRN574|hsa-mir-574|mir-574	microRNA 574	ncRNA
146253	chr20	48912171	48912530	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-9361	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
4192	chr1	19438771	19439250	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	45285	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
154175	chr22	31309271	31309430	+	0	NA	Intergenic	Intergenic	-16816	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
151456	chr21	46181251	46181550	+	0	NA	intron (NM_032261, intron 1 of 3)	intron (NM_032261, intron 1 of 3)	3059	NM_001142854	84221		NM_032261	ENSG00000160284	SPATC1L	C21orf56	spermatogenesis and centriole associated 1 like	protein-coding
92398	chr17	8310021	8310480	+	0	NA	promoter-TSS (NM_025014)	promoter-TSS (NM_025014)	9	NM_173728	22899		NM_025014	ENSG00000198844	ARHGEF15	ARGEF15|E5|Ephexin5|Vsm-RhoGEF	Rho guanine nucleotide exchange factor 15	protein-coding
192912	chr6	27650801	27651080	+	0	NA	Intergenic	tRNA-Val-GTY|tRNA|tRNA	-43095	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
139991	chr2	230929271	230929500	+	0	NA	Intergenic	Intergenic	-4143	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
170867	chr3	192838171	192838330	+	0	NA	intron (NM_178496, intron 1 of 1)	MLT1F1|LTR|ERVL-MaLR	79606	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
181627	chr5	48791321	48791400	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1649928	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
93662	chr17	19202501	19203250	+	0	NA	Intergenic	L2a|LINE|L2	-12630	NR_006881	780853		NR_006881		SNORD3C	RNU3-3|U3-3	small nucleolar RNA, C/D box 3C	snoRNA
94812	chr17	31311671	31311850	+	0	NA	intron (NM_006495, intron 1 of 1)	MIR|SINE|MIR	2294	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
192283	chr6	20454271	20454580	+	0	NA	intron (NM_001243076, intron 1 of 6)	intron (NM_001243076, intron 1 of 6)	50746	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
87520	chr16	71890671	71891250	+	0	NA	Intergenic	AluY|SINE|Alu	-3448	NM_001270976	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
227210	chr9	88386151	88386330	+	0	NA	Intergenic	AluSz|SINE|Alu	-2204	NM_006717	10927		NM_006717	ENSG00000106723	SPIN1	SPIN|TDRD24	spindlin 1	protein-coding
173553	chr4	10088071	10088430	+	0	NA	intron (NM_017491, intron 7 of 14)	intron (NM_017491, intron 7 of 14)	-9558	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
120707	chr19	45180921	45181180	+	0	NA	3' UTR (NM_212550, exon 2 of 2)	3' UTR (NM_212550, exon 2 of 2)	2266	NM_212550	388552		NM_212550	ENSG00000189114	BLOC1S3	BLOS3|HPS8|RP	biogenesis of lysosomal organelles complex 1 subunit 3	protein-coding
65686	chr14	52720071	52720230	+	0	NA	intron (NR_158967, intron 10 of 14)	AluSg|SINE|Alu	-10016	NM_001130701	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
51832	chr12	53455651	53455750	+	0	NA	intron (NM_031989, intron 4 of 14)	intron (NM_031989, intron 4 of 14)	3598	NM_001098620	5094		NM_005016	ENSG00000197111	PCBP2	HNRNPE2|HNRPE2|hnRNP-E2	poly(rC) binding protein 2	protein-coding
8255	chr1	39784071	39784430	+	0	NA	intron (NM_001720, intron 1 of 6)	MIRb|SINE|MIR	4615	NM_001720	656		NM_001720	ENSG00000116985	BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
165396	chr3	96813121	96813850	+	0	NA	Intergenic	CpG	-1109	NM_001080448	285220		NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding
25060	chr10	3800401	3801000	+	0	NA	Intergenic	L1MA5A|LINE|L1	-15419	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
86906	chr16	68065951	68066250	+	0	NA	intron (NM_001271763, intron 6 of 14)	L2a|LINE|L2	-19270	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
32739	chr10	104308501	104309300	+	0	NA	TTS (NM_001272013)	TTS (NM_001272013)	-14464	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
90235	chr17	714101	715530	+	0	NA	promoter-TSS (NM_001366254)	promoter-TSS (NM_001366254)	24	NM_018289	55275		NM_018289	ENSG00000141252	VPS53	HCCS1|PCH2E|hVps53L|pp13624	VPS53 subunit of GARP complex	protein-coding
239141	chrY	11322521	11322950	+	0	NA	Intergenic	CpG	1098855	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
203285	chr6	169808671	169808830	+	0	NA	Intergenic	Intergenic	-9925	NR_026781	401288		NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
225168	chr9	33842901	33843100	+	0	NA	intron (NM_017811, intron 1 of 4)	FRAM|SINE|Alu	25840	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
164510	chr3	62451501	62451900	+	0	NA	intron (NM_183393, intron 23 of 26)	intron (NM_183393, intron 23 of 26)	-78150	NM_018008	55079		NM_018008	ENSG00000153266	FEZF2	FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312	FEZ family zinc finger 2	protein-coding
77048	chr15	78830571	78831130	+	0	NA	Intergenic	CpG	-19386	NM_014272	11173		NM_014272	ENSG00000136378	ADAMTS7	ADAM-TS 7|ADAM-TS7|ADAMTS-7	ADAM metallopeptidase with thrombospondin type 1 motif 7	protein-coding
211128	chr7	102533051	102533850	+	0	NA	Intergenic	AluSx1|SINE|Alu	11338	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
75368	chr15	65612701	65612900	+	0	NA	intron (NM_001301033, intron 2 of 11)	intron (NM_001301033, intron 2 of 11)	1450	NM_001301033	9187		NM_004727	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 member 1	protein-coding
25095	chr10	3888901	3889100	+	0	NA	Intergenic	AluSx3|SINE|Alu	55050	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
200492	chr6	135494151	135494700	+	0	NA	intron (NM_001134830, intron 1 of 26)	intron (NM_001134830, intron 1 of 26)	3315	NM_001134831	54806		NM_017651	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
80282	chr16	2244471	2244630	+	0	NA	exon (NM_001919, exon 4 of 7)	exon (NM_001919, exon 4 of 7)	7037	NM_001178029	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
195622	chr6	37731751	37732130	+	0	NA	Intergenic	Intergenic	-34057	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
157873	chr22	49667001	49667750	+	0	NA	Intergenic	Intergenic	-9856	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
9926	chr1	54473101	54473500	+	0	NA	Intergenic	Intergenic	-66906	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
76492	chr15	74904521	74905350	+	0	NA	intron (NM_001321922, intron 3 of 4)	intron (NM_001321922, intron 3 of 4)	1916	NR_135852	57184		NM_020447	ENSG00000178761	FAM219B	C15orf17	family with sequence similarity 219 member B	protein-coding
167686	chr3	130143601	130143830	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	31165	NR_146654	105374104		NR_146653	ENSG00000249846	LINC02021	-	long intergenic non-protein coding RNA 2021	ncRNA
24816	chr10	248321	248600	+	0	NA	exon (NM_001370121, exon 11 of 13)	exon (NM_001370121, exon 11 of 13)	68466	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
27340	chr10	30645371	30645700	+	0	NA	Intergenic	Intergenic	-15782	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
23666	chr1	231242471	231242850	+	0	NA	intron (NM_001316350, intron 1 of 14)	intron (NM_001316350, intron 1 of 14)	1448	NM_001316350	8443		NM_014236	ENSG00000116906	GNPAT	DAP-AT|DAPAT|DHAPAT|RCDP2	glyceronephosphate O-acyltransferase	protein-coding
228830	chr9	112093821	112094380	+	0	NA	intron (NM_022486, intron 10 of 16)	MER5A|DNA|hAT-Charlie	81197	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
188729	chr5	157459521	157460450	+	0	NA	promoter-TSS (NM_001099287)	promoter-TSS (NM_001099287)	-34	NM_001172292	348938		NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN|NIPA4|SLC57A6	NIPA like domain containing 4	protein-coding
32568	chr10	103429951	103430050	+	0	NA	intron (NM_014976, intron 21 of 35)	AluJb|SINE|Alu	22370	NR_046344	51063		NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator family member 2	protein-coding
206158	chr7	27967721	27967980	+	0	NA	intron (NM_175061, intron 2 of 4)	L1ME3|LINE|L1	-212607	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
142723	chr20	9610001	9610200	+	0	NA	intron (NM_177990, intron 3 of 9)	intron (NM_177990, intron 3 of 9)	-95102	NR_109957	101929329		NR_109957	ENSG00000225988	LAMP5-AS1	-	LAMP5 antisense RNA 1	ncRNA
227037	chr9	83962521	83963350	+	0	NA	Intergenic	Intergenic	-5949	NM_001317997	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
145914	chr20	45996301	45996500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12508	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
121884	chr19	48351101	48351580	+	0	NA	intron (NR_130317, intron 1 of 5)	L2a|LINE|L2	12600	NM_001303538	55260		NM_018273	ENSG00000161558	TMEM143	-	transmembrane protein 143	protein-coding
165368	chr3	93165201	93165400	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	808596	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
158529	chr3	3177851	3178450	+	0	NA	intron (NM_016302, intron 1 of 10)	intron (NM_016302, intron 1 of 10)	1541	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
207748	chr7	48101371	48101530	+	0	NA	intron (NM_001287426, intron 5 of 9)	intron (NM_001287426, intron 5 of 9)	12185	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
125690	chr2	20340301	20340500	+	0	NA	intron (NM_001352925, intron 1 of 19)	Charlie2a|DNA|hAT-Charlie	10444	NM_001352927	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
175572	chr4	75645451	75645950	+	0	NA	exon (NM_203504, exon 11 of 11)	exon (NM_203504, exon 11 of 11)	-15172	NM_001330724	8999		NM_003948	ENSG00000138769	CDKL2	KKIAMRE|P56	cyclin dependent kinase like 2	protein-coding
53598	chr12	68032001	68032800	+	0	NA	Intergenic	Intergenic	42955	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
217357	chr8	27836651	27836750	+	0	NA	intron (NM_001278945, intron 1 of 7)	intron (NM_001278945, intron 1 of 7)	1117	NM_001278945	55872		NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
64916	chr14	35417901	35418100	+	0	NA	Intergenic	L2c|LINE|L2	-13251	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
170438	chr3	185902421	185902680	+	0	NA	Intergenic	AluSx1|SINE|Alu	35464	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
225196	chr9	34053071	34053230	+	0	NA	Intergenic	Intergenic	-3951	NM_001370059	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
128814	chr2	62754501	62754700	+	0	NA	intron (NM_001142616, intron 3 of 22)	L1PA5|LINE|L1	47703	NM_001354217	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
153638	chr22	28774501	28774900	+	0	NA	intron (NM_001284264, intron 2 of 3)	intron (NM_001284264, intron 2 of 3)	1563	NM_001284265	150275		NM_173510	ENSG00000159873	CCDC117	dJ366L4.1	coiled-coil domain containing 117	protein-coding
127380	chr2	39728901	39729230	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	50193	NM_025264	80745		NM_025264	ENSG00000138050	THUMPD2	C2orf8	THUMP domain containing 2	protein-coding
122408	chr19	49441171	49441900	+	0	NA	promoter-TSS (NM_020309)	promoter-TSS (NM_020309)	-8	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
133006	chr2	111625221	111625480	+	0	NA	Intergenic	AluY|SINE|Alu	-130189	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
110232	chr19	1767421	1768130	+	0	NA	intron (NM_001080488, intron 1 of 1)	intron (NM_001080488, intron 1 of 1)	14269	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
44106	chr11	95923551	95924350	+	0	NA	exon (NM_016156, exon 1 of 15)	exon (NM_016156, exon 1 of 15)	157	NM_016156	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
21556	chr1	206281721	206282030	+	0	NA	intron (NM_001377446, intron 2 of 21)	AluYc|SINE|Alu	-76102	NM_001385243	729533		NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
180454	chr5	10635271	10636050	+	0	NA	intron (NM_001164440, intron 2 of 3)	intron (NM_001164440, intron 2 of 3)	71590	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
19034	chr1	169687751	169688050	+	0	NA	Intergenic	LTR2|LTR|ERV1	20957	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
6862	chr1	31072321	31072580	+	0	NA	Intergenic	LTR27C|LTR|ERV1	-6733	NM_014676	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
1314	chr1	2404671	2405030	+	0	NA	non-coding (NR_164636, exon 6 of 6)	non-coding (NR_164636, exon 6 of 6)	7714	NM_002617	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
22152	chr1	212121871	212122430	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	44537	NR_036068	100422947		NR_036068	ENSG00000264358	MIR3122	mir-3122	microRNA 3122	ncRNA
113164	chr19	8377801	8378280	+	0	NA	intron (NR_038237, intron 1 of 2)	AluSc8|SINE|Alu	11340	NR_049795	100847049		NR_049795	ENSG00000265390	MIR4999	mir-4999	microRNA 4999	ncRNA
96640	chr17	40602551	40603800	+	0	NA	Intergenic	Intergenic	-37703	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
148846	chr21	8410571	8411600	+	0	NA	TTS (NR_038958).2	TTS (NR_038958).2	14159	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
175465	chr4	72567971	72568130	+	0	NA	intron (NM_014243, intron 1 of 21)	intron (NM_014243, intron 1 of 21)	1171	NM_014243	9508		NM_014243	ENSG00000156140	ADAMTS3	ADAMTS-4|HKLLS3	ADAM metallopeptidase with thrombospondin type 1 motif 3	protein-coding
236375	chrX	70998571	70998750	+	0	NA	Intergenic	L1MA3|LINE|L1	-67564	NM_032803	84889		NM_032803	ENSG00000165349	SLC7A3	ATRC3|CAT-3|CAT3	solute carrier family 7 member 3	protein-coding
137445	chr2	196975321	196975580	+	0	NA	Intergenic	L1M4|LINE|L1	-48743	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
86337	chr16	66461571	66461730	+	0	NA	intron (NM_001178020, intron 2 of 4)	intron (NM_001178020, intron 2 of 4)	14752	NR_109960	101927726		NR_109960	ENSG00000261656	BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
174063	chr4	26915151	26915250	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	54359	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
19817	chr1	182629601	182630100	+	0	NA	Intergenic	Intergenic	14710	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
103315	chr17	77894271	77894680	+	0	NA	Intergenic	Intergenic	-10388	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
199595	chr6	119179901	119180200	+	0	NA	intron (NM_005907, intron 12 of 12)	intron (NM_005907, intron 12 of 12)	-30857	NM_001100411	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
162033	chr3	46690771	46691180	+	0	NA	intron (NM_147129, intron 1 of 25)	intron (NM_147129, intron 1 of 25)	2704	NM_147129	259173		NM_147129	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
189251	chr5	172039821	172040750	+	0	NA	Intergenic	Intergenic	-33647	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
236840	chrX	79257901	79258100	+	0	NA	Intergenic	Intergenic	109334	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
75924	chr15	70101871	70102450	+	0	NA	Intergenic	Intergenic	-4243	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
20304	chr1	197327721	197327980	+	0	NA	intron (NM_001257965, intron 3 of 14)	Charlie15a|DNA|hAT-Charlie	59598	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
222139	chr8	132479621	132480150	+	0	NA	intron (NM_004519, intron 1 of 14)	CpG	1210	NM_004519	3786		NM_004519	ENSG00000184156	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel subfamily Q member 3	protein-coding
141758	chr2	241950801	241951150	+	0	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	-19708	NR_110592	102723927		NR_110592	ENSG00000237940	LINC01238	-	long intergenic non-protein coding RNA 1238	ncRNA
48463	chr12	9754501	9755630	+	0	NA	exon (NM_001781, exon 3 of 5)	exon (NM_001781, exon 3 of 5)	5836	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
160335	chr3	27709451	27709750	+	0	NA	Intergenic	Intergenic	12723	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
91044	chr17	2890521	2890780	+	0	NA	intron (NM_001100398, intron 2 of 23)	HAL1|LINE|L1	75245	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
87671	chr16	74602571	74602880	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluSx4|SINE|Alu	4389	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
73445	chr15	43270621	43270950	+	0	NA	Intergenic	Intergenic	-3857	NM_201631	9333		NM_004245	ENSG00000104055	TGM5	PSS2|TG(X)|TGASE5|TGASEX|TGM6|TGMX|TGX	transglutaminase 5	protein-coding
61718	chr13	74114171	74115030	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	19329	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
54847	chr12	95235251	95235550	+	0	NA	intron (NM_001352100, intron 2 of 12)	SVA_D|Retroposon|SVA	17593	NM_001352119	55591		NM_017599	ENSG00000028203	VEZT	VEZATIN	vezatin, adherens junctions transmembrane protein	protein-coding
101862	chr17	74210201	74211250	+	0	NA	TTS (NM_001035258)	TTS (NM_001035258)	2596	NR_026914	85001		NM_032915	ENSG00000246731	MGC16275	-	uncharacterized protein MGC16275	ncRNA
142624	chr20	5610501	5611550	+	0	NA	promoter-TSS (NM_019593)	promoter-TSS (NM_019593)	-19	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
60016	chr13	32533371	32534280	+	0	NA	intron (NM_001278432, intron 2 of 9)	intron (NM_001278432, intron 2 of 9)	4970	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
36794	chr11	9510771	9511600	+	0	NA	intron (NM_001282656, intron 12 of 15)	AluSp|SINE|Alu	50173	NM_003442	7702		NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
131474	chr2	96462051	96462350	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	43157	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
127234	chr2	38664901	38665100	+	0	NA	Intergenic	Intergenic	-1114	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
125946	chr2	25204221	25204730	+	0	NA	non-coding (NR_132378, exon 1 of 2)	non-coding (NR_132378, exon 1 of 2)	162	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
194806	chr6	34240501	34241150	+	0	NA	TTS (NR_106893)	TTS (NR_106893)	152	NR_106893	102465502		NR_106893	ENSG00000276404	MIR6835	hsa-mir-6835	microRNA 6835	ncRNA
208473	chr7	66996301	66997350	+	0	NA	promoter-TSS (NR_134540)	promoter-TSS (NR_134540)	-8	NM_018264	55253		NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog	protein-coding
72259	chr15	30605651	30605950	+	0	NA	intron (NM_001282490, intron 1 of 18).2	intron (NM_001282490, intron 1 of 18).2	1770	NR_024074	283796		NM_173613	ENSG00000291004	GOLGA8IP	GOLGA8I|GOLGA9P	golgin A8 family member I, pseudogene	pseudo
92156	chr17	7682201	7682400	+	0	NA	intron (NM_000546, intron 1 of 10)	AluY|SINE|Alu	-3771	NM_001143990	55135		NM_018081	ENSG00000141499	WRAP53	DKCB3|TCAB1|WDR79	WD repeat containing antisense to TP53	protein-coding
78657	chr15	94304851	94305560	+	0	NA	intron (NM_001385002, intron 3 of 23)	MLT1A|LTR|ERVL-MaLR	-50725	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
91552	chr17	5041951	5042700	+	0	NA	Intergenic	Intergenic	-6893	NM_001104577	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
209645	chr7	77797071	77797230	+	0	NA	intron (NM_032936, intron 1 of 1)	intron (NM_032936, intron 1 of 1)	1284	NM_032936	85025		NM_032936	ENSG00000135211	TMEM60	C7orf35|DC32	transmembrane protein 60	protein-coding
56452	chr12	114508551	114508800	+	0	NA	Intergenic	Intergenic	-100233	NM_000192	6910		NM_000192	ENSG00000089225	TBX5	HOS	T-box transcription factor 5	protein-coding
14333	chr1	143917521	143917780	+	0	NA	Intergenic	Intergenic	-11673	NM_001372105	440686		NM_001025303	ENSG00000273213	H3-7	H3-2|H3.7|HIST2H3PS2|p06	H3.7 histone (putative)	protein-coding
182091	chr5	56005771	56006330	+	0	NA	Intergenic	Intergenic	10883	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
144168	chr20	34079771	34080130	+	0	NA	3' UTR (NM_007367, exon 9 of 9)	3' UTR (NM_007367, exon 9 of 9)	30831	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
124930	chr2	8548451	8548750	+	0	NA	Intergenic	L2b|LINE|L2	35192	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
173085	chr4	6250601	6251400	+	0	NA	Intergenic	Intergenic	-18850	NM_001145853	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
221357	chr8	123276371	123276880	+	0	NA	Intergenic	AluSg|SINE|Alu	-1084	NR_037873	11244		NM_007222	ENSG00000165156	ZHX1	-	zinc fingers and homeoboxes 1	protein-coding
66121	chr14	60100071	60100430	+	0	NA	intron (NM_022495, intron 1 of 9)	intron (NM_022495, intron 1 of 9)	8327	NM_001330177	64430		NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex 4	protein-coding
192859	chr6	27209821	27209900	+	0	NA	Intergenic	tRNA-Ser-TCG|tRNA|tRNA	-37841	NM_005865	10279		NM_005865	ENSG00000112812	PRSS16	TSSP	serine protease 16	protein-coding
126071	chr2	25790001	25791150	+	0	NA	intron (NM_001369347, intron 1 of 9)	intron (NM_001369347, intron 1 of 9)	4116	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
211037	chr7	102423851	102424150	+	0	NA	intron (NR_038967, intron 8 of 8)	intron (NR_038967, intron 8 of 8)	-9530	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
175776	chr4	77789171	77790330	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluJb|SINE|Alu	29314	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
167328	chr3	128740551	128741100	+	0	NA	intron (NM_004637, intron 1 of 5)	AluJb|SINE|Alu	14642	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
150018	chr21	37224721	37225100	+	0	NA	3' UTR (NM_001331022, exon 7 of 7)	3' UTR (NM_001331022, exon 7 of 7)	16407	NR_026719	257203		NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9	ncRNA
110098	chr19	1542651	1543430	+	0	NA	Intergenic	L1MD2|LINE|L1	18963	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
118310	chr19	35483101	35483300	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	7264	NM_001244847	388533		NM_207392	ENSG00000188508	KRTDAP	KDAP|UNQ467	keratinocyte differentiation associated protein	protein-coding
100864	chr17	64269971	64270130	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-6790	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
158390	chr22	50509971	50510550	+	0	NA	intron (NM_014551, intron 1 of 8)	intron (NM_014551, intron 1 of 8)	2036	NM_001185011	29781		NM_014551	ENSG00000025770	NCAPH2	CAPH2	non-SMC condensin II complex subunit H2	protein-coding
117884	chr19	32677251	32677350	+	0	NA	3' UTR (NM_207391, exon 1 of 1)	3' UTR (NM_207391, exon 1 of 1)	1452	NM_207391	388531		NM_207391	ENSG00000186326	RGS9BP	PERRS|PERRS2|R9AP|RGS9	regulator of G protein signaling 9 binding protein	protein-coding
94958	chr17	32128521	32128780	+	0	NA	Intergenic	AluJb|SINE|Alu	-13804	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
66828	chr14	64764651	64765550	+	0	NA	intron (NM_001355436, intron 32 of 35)	intron (NM_001355436, intron 32 of 35)	20586	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
146889	chr20	51523571	51524000	+	0	NA	exon (NM_001136021, exon 2 of 11)	exon (NM_001136021, exon 2 of 11)	18934	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
234364	chrX	15741101	15741500	+	0	NA	intron (NM_007220, intron 1 of 7)	AluSz|SINE|Alu	3030	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
148391	chr20	63920151	63920250	+	0	NA	TTS (NR_040032)	TTS (NR_040032)	332	NR_040032	100126330		NR_040032	ENSG00000216195	MIR941-4	MIRN941-4	microRNA 941-4	ncRNA
71668	chr15	17082451	17082950	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-3200044	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
130472	chr2	85548971	85549130	+	0	NA	3' UTR (NM_001142269, exon 14 of 14)	3' UTR (NM_001142269, exon 14 of 14)	9882	NM_005911	4144		NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding
21752	chr1	206898801	206899200	+	0	NA	intron (NM_001185158, intron 2 of 4)	intron (NM_001185158, intron 2 of 4)	1557	NM_006850	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
237205	chrX	108071701	108072380	+	0	NA	intron (NM_001170553, intron 4 of 7)	intron (NM_001170553, intron 4 of 7)	19502	NM_002814	5716		NM_002814	ENSG00000101843	PSMD10	dJ889N15.2|p28|p28(GANK)	proteasome 26S subunit, non-ATPase 10	protein-coding
195457	chr6	37007771	37007930	+	0	NA	intron (NM_173558, intron 1 of 15)	MIRb|SINE|MIR	2195	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
135538	chr2	162316621	162317150	+	0	NA	intron (NM_022168, intron 1 of 15)	intron (NM_022168, intron 1 of 15)	1799	NM_022168	64135		NM_022168	ENSG00000115267	IFIH1	AGS7|Hlcd|IDDM19|IMD95|MDA-5|MDA5|RLR-2|SGMRT1	interferon induced with helicase C domain 1	protein-coding
102734	chr17	76235351	76235650	+	0	NA	intron (NM_052916, intron 1 of 18)	intron (NM_052916, intron 1 of 18)	4993	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
56234	chr12	111839971	111840700	+	0	NA	non-coding (NR_152608, exon 2 of 2)	non-coding (NR_152608, exon 2 of 2)	1595	NR_152606	51275		NR_015404	ENSG00000234608	MAPKAPK5-AS1	C12orf47|MAAS	MAPKAPK5 antisense RNA 1	ncRNA
111380	chr19	3718901	3719580	+	0	NA	intron (NM_001267560, intron 1 of 20)	intron (NM_001267560, intron 1 of 20)	-2497	NM_001267561	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
17968	chr1	160450421	160450680	+	0	NA	Intergenic	L1ME4c|LINE|L1	49986	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
29903	chr10	73155501	73155700	+	0	NA	intron (NM_007265, intron 5 of 13)	AluSq2|SINE|Alu	12408	NM_007265	11319		NM_007265	ENSG00000122882	ECD	GCR2|HSGT1|SGT1	ecdysoneless cell cycle regulator	protein-coding
48599	chr12	10320671	10321480	+	0	NA	non-coding (NR_147040, exon 5 of 5)	non-coding (NR_147040, exon 5 of 5)	13205	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
222248	chr8	133202621	133203280	+	0	NA	intron (NM_001204870, intron 1 of 1)	intron (NM_001204870, intron 1 of 1)	11911	NM_080838	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
39082	chr11	47997301	47997580	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	16881	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
62118	chr13	95494071	95494230	+	0	NA	intron (NR_046533, intron 3 of 3)	L1MC5|LINE|L1	39760	NR_046533	100874194		NR_046533	ENSG00000223392	CLDN10-AS1	-	CLDN10 antisense RNA 1	ncRNA
185215	chr5	120464851	120464950	+	0	NA	promoter-TSS (NM_001308087)	promoter-TSS (NM_001308087)	600	NM_001300783	51334		NM_016644	ENSG00000184838	PRR16	DSC54|LARGEN	proline rich 16	protein-coding
120882	chr19	45578521	45578780	+	0	NA	intron (NM_025136, intron 1 of 1)	AluSp|SINE|Alu	6152	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
156505	chr22	41303921	41304550	+	0	NA	intron (NM_017590, intron 1 of 22)	AluJr4|SINE|Alu	-1866	NM_001317930	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
71377	chr14	105502671	105502900	+	0	NA	Intergenic	Intergenic	11536	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
177425	chr4	112511471	112511830	+	0	NA	Intergenic	Intergenic	-3729	NR_161159	105377372		NR_161159		NEUROG2-AS1	-	NEUROG2 and ZGRF1 antisense RNA 1	ncRNA
6988	chr1	31815171	31815330	+	0	NA	exon (NM_001281987, exon 2 of 16)	exon (NM_001281987, exon 2 of 16)	801	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
149864	chr21	35340351	35340450	+	0	NA	Intergenic	Intergenic	240364	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
16931	chr1	155904051	155904550	+	0	NA	intron (NM_001256821, intron 5 of 5)	intron (NM_001256821, intron 5 of 5)	6618	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
219518	chr8	74321371	74321950	+	0	NA	promoter-TSS (NM_020647)	promoter-TSS (NM_020647)	-120	NM_001317830	56704		NM_020647	ENSG00000104369	JPH1	CMT2K|JP-1|JP1	junctophilin 1	protein-coding
42908	chr11	73384371	73384630	+	0	NA	intron (NM_032871, intron 1 of 10)	MIRb|SINE|MIR	7832	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
91756	chr17	6831221	6832400	+	0	NA	promoter-TSS (NM_053285)	promoter-TSS (NM_053285)	-81	NM_053285	83659		NM_053285	ENSG00000167858	TEKT1	-	tektin 1	protein-coding
62811	chr13	109754401	109755000	+	0	NA	3' UTR (NM_003749, exon 2 of 2)	3' UTR (NM_003749, exon 2 of 2)	26426	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
90058	chr16	89939721	89939980	+	0	NA	Intergenic	AluSc8|SINE|Alu	-8881	NM_001242821	54849		NM_017702	ENSG00000140995	DEF8	-	differentially expressed in FDCP 8 homolog	protein-coding
102633	chr17	76018251	76018550	+	0	NA	intron (NM_001320747, intron 12 of 21)	intron (NM_001320747, intron 12 of 21)	8906	NM_001320747	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
209971	chr7	92797351	92797950	+	0	NA	intron (NM_001145306, intron 2 of 7)	intron (NM_001145306, intron 2 of 7)	36309	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
26364	chr10	15921201	15921400	+	0	NA	Intergenic	L1PA2|LINE|L1	-60767	NM_001318330	80013		NM_024948	ENSG00000148481	MINDY3	C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042	MINDY lysine 48 deubiquitinase 3	protein-coding
4957	chr1	23979911	23981580	+	0	NA	promoter-TSS (NM_054016)	promoter-TSS (NM_054016)	-418	NM_001191005	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
130565	chr2	85751571	85751880	+	0	NA	Intergenic	Intergenic	-2266	NM_032827	84913		NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
181452	chr5	41865901	41866100	+	0	NA	intron (NR_157114, intron 1 of 15)	intron (NR_157114, intron 1 of 15)	-4030	NR_046635	100874002		NR_046635	ENSG00000248668	OXCT1-AS1	SARRAH	OXCT1 antisense RNA 1	ncRNA
57605	chr12	122469421	122469680	+	0	NA	Intergenic	AluY|SINE|Alu	31382	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
111234	chr19	3512871	3513750	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	6999	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
61386	chr13	51456451	51456750	+	0	NA	Intergenic	MER52A|LTR|ERV1	3255	NR_103812	100507398		NR_103812	ENSG00000236778	INTS6-AS1	-	INTS6 antisense RNA 1	ncRNA
33269	chr10	114520001	114520680	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	6573	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
159189	chr3	12839751	12840050	+	0	NA	TTS (NR_002582)	TTS (NR_002582)	550	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
22911	chr1	225896571	225897630	+	0	NA	Intergenic	Intergenic	-7954	NM_020997	10637		NM_020997	ENSG00000243709	LEFTY1	LEFTB|LEFTYB	left-right determination factor 1	protein-coding
218280	chr8	42290951	42291250	+	0	NA	intron (NM_001190720, intron 3 of 20)	MIR|SINE|MIR	19798	NM_001242778	3551		NM_001556	ENSG00000104365	IKBKB	IKK-2|IKK-beta|IKK2|IKKB|IMD15|IMD15A|IMD15B|NFKBIKB	inhibitor of nuclear factor kappa B kinase subunit beta	protein-coding
103426	chr17	78249621	78250080	+	0	NA	intron (NR_164160, intron 1 of 1)	intron (NR_164160, intron 1 of 1)	1534	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
58697	chr12	132557451	132557750	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-24397	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
106395	chr18	13401421	13401880	+	0	NA	intron (NM_001378099, intron 3 of 6)	intron (NM_001378099, intron 3 of 6)	25884	NR_040031	100288122		NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
85810	chr16	56978971	56979130	+	0	NA	intron (NM_000078, intron 11 of 15)	AluSz6|SINE|Alu	-10507	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
17324	chr1	156469801	156470630	+	0	NA	intron (NM_001271629, intron 8 of 10)	AluSx3|SINE|Alu	20472	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
764	chr1	1510451	1510650	+	0	NA	Intergenic	AluSx|SINE|Alu	-1612	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
132680	chr2	108786121	108787450	+	0	NA	promoter-TSS (NM_144978)	promoter-TSS (NM_144978)	14	NR_147236	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
87379	chr16	70438211	70440230	+	0	NA	promoter-TSS (NM_006927)	promoter-TSS (NM_006927)	-120	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
204263	chr7	2631421	2632380	+	0	NA	promoter-TSS (NM_025250)	promoter-TSS (NM_025250)	-86	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
52299	chr12	54702071	54702480	+	0	NA	Intergenic	Intergenic	-53910	NM_001300854	117159		NM_053283	ENSG00000161634	DCD	AIDD|DCD-1|DSEP|HCAP|PIF	dermcidin	protein-coding
232186	chr9	134188921	134189180	+	0	NA	Intergenic	Intergenic	-24486	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
190961	chr6	2938701	2938900	+	0	NA	Intergenic	MER50C|LTR|ERV1	23330	NM_001271825	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
186705	chr5	138789701	138790130	+	0	NA	intron (NM_001290307, intron 3 of 18)	L3|LINE|CR1	-35991	NR_134244	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
165841	chr3	105850721	105851250	+	0	NA	intron (NR_135807, intron 3 of 20)	L1MC2|LINE|L1	16606	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
138493	chr2	207142271	207142770	+	0	NA	intron (NM_001270943, intron 1 of 3)	L2c|LINE|L2	-8383	NM_001270944	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
209308	chr7	76046221	76046480	+	0	NA	intron (NM_001317786, intron 1 of 8)	(GC)n|Simple_repeat|Simple_repeat	1650	NM_001317787	51657		NM_016086	ENSG00000127952	STYXL1	DUSP24|MK-STYX|MKSTYX	serine/threonine/tyrosine interacting like 1	protein-coding
54426	chr12	91370401	91370800	+	0	NA	Intergenic	Intergenic	-187783	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
78410	chr15	92077171	92077600	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	223081	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
211210	chr7	102624901	102625100	+	0	NA	Intergenic	Intergenic	-8242	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
97664	chr17	44212501	44212700	+	0	NA	intron (NR_045058, intron 7 of 20)	intron (NR_045058, intron 7 of 20)	-4761	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
84066	chr16	29591551	29592630	+	0	NA	intron (NR_135305, intron 1 of 13)	intron (NR_135305, intron 1 of 13)	3002	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
201494	chr6	149028651	149029200	+	0	NA	intron (NR_134599, intron 1 of 1)	intron (NR_134599, intron 1 of 1)	3736	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
43525	chr11	82689551	82689800	+	0	NA	Intergenic	CpG	44189	NM_175885	220382		NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
38220	chr11	36413001	36413200	+	0	NA	intron (NM_001160167, intron 3 of 8)	intron (NM_001160167, intron 3 of 8)	12103	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
132569	chr2	106489071	106489550	+	0	NA	intron (NM_001349727, intron 1 of 5)	intron (NM_001349727, intron 1 of 5)	1946	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
14654	chr1	145689071	145689750	+	0	NA	intron (NM_001371361, intron 1 of 7)	intron (NM_001371361, intron 1 of 7)	17958	NM_001371361	5174		NM_002614	ENSG00000174827	PDZK1	CAP70|CLAMP|NHERF-3|NHERF3|PDZD1	PDZ domain containing 1	protein-coding
30843	chr10	86507151	86507750	+	0	NA	intron (NM_015045, intron 2 of 18)	L2|LINE|L2	14334	NM_001318328	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
202567	chr6	158678871	158679280	+	0	NA	intron (NM_001318745, intron 2 of 14)	intron (NM_001318745, intron 2 of 14)	15672	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
2998	chr1	12045421	12045680	+	0	NA	Intergenic	Intergenic	16392	NR_106787	102466982		NR_106787	ENSG00000276869	MIR6729	hsa-mir-6729	microRNA 6729	ncRNA
128257	chr2	54568871	54570380	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	11231	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
198150	chr6	90584851	90585350	+	0	NA	intron (NM_145333, intron 1 of 14)	MIRb|SINE|MIR	1972	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
26928	chr10	26479621	26480480	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	41709	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
130104	chr2	74524071	74524430	+	0	NA	exon (NM_133637, exon 4 of 12)	exon (NM_133637, exon 4 of 12)	1981	NM_133637	165545		NM_133637	ENSG00000144045	DQX1	-	DEAQ-box RNA dependent ATPase 1	protein-coding
55166	chr12	100163621	100164580	+	0	NA	TTS (NR_024261)	TTS (NR_024261)	9243	NR_024261	55592		NM_017600	ENSG00000290571	GOLGA2P5	GOLGA2B|GOLGA2L1	GOLGA2 pseudogene 5	pseudo
218334	chr8	42841671	42841850	+	0	NA	intron (NM_018105, intron 1 of 2)	intron (NM_018105, intron 1 of 2)	1565	NM_018105	55145		NM_018105	ENSG00000131931	THAP1	DYT6	THAP domain containing 1	protein-coding
190855	chr6	1770221	1770800	+	0	NA	intron (NM_001253846, intron 7 of 10)	intron (NM_001253846, intron 7 of 10)	160595	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
144196	chr20	34300351	34300650	+	0	NA	intron (NM_001161766, intron 1 of 9)	L2|LINE|L2	2490	NM_001322086	191		NM_000687	ENSG00000101444	AHCY	SAHH|adoHcyase	adenosylhomocysteinase	protein-coding
227128	chr9	86202001	86202500	+	0	NA	Intergenic	Intergenic	53783	NM_001276368	389766		NM_001010907	ENSG00000187753	C9orf153	bA507D14.1	chromosome 9 open reading frame 153	protein-coding
110066	chr19	1494321	1494680	+	0	NA	intron (NM_138393, intron 1 of 4)	MER20|DNA|hAT-Charlie	3319	NM_138393	92840		NM_138393	ENSG00000115255	REEP6	C19orf32|DP1L1|REEP6.1|REEP6.2|RP77|TB1|TB2L1|Yip2f	receptor accessory protein 6	protein-coding
161157	chr3	39092671	39092830	+	0	NA	intron (NM_001346226, intron 17 of 18)	L1MC5a|LINE|L1	14877	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
107086	chr18	35031801	35032380	+	0	NA	intron (NM_001143826, intron 2 of 7)	intron (NM_001143826, intron 2 of 7)	-9323	NR_046177	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
37745	chr11	31816471	31816630	+	0	NA	promoter-TSS (NR_033971)	promoter-TSS (NR_033971)	-16	NR_033971	440034		NR_033971	ENSG00000281880	PAX6-AS1	DKFZp686K1684	PAX6 antisense RNA 1	ncRNA
228054	chr9	96026071	96026430	+	0	NA	intron (NM_001375291, intron 18 of 18)	CpG	-4439	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
108500	chr18	74064601	74064800	+	0	NA	Intergenic	Intergenic	83134	NM_152676	201456		NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
224914	chr9	32556601	32557450	+	0	NA	intron (NM_182739, intron 2 of 2)	AluSx|SINE|Alu	-4397	NM_001195622	10210		NM_005802	ENSG00000197579	TOPORS	LUN|P53BP3|RP31|TP53BPL	TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase	protein-coding
218001	chr8	38403921	38404380	+	0	NA	intron (NM_144652, intron 6 of 9)	intron (NM_144652, intron 6 of 9)	17019	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
69803	chr14	99202271	99202680	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	69722	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
31139	chr10	89701151	89702630	+	0	NA	intron (NR_168375, intron 1 of 30)	MIR|SINE|MIR	300	NM_001284259	9585		NM_016195	ENSG00000138182	KIF20B	CT90|KRMP1|MPHOSPH1|MPP-1|MPP1	kinesin family member 20B	protein-coding
35131	chr11	708151	708250	+	0	NA	intron (NM_022772, intron 1 of 20)	intron (NM_022772, intron 1 of 20)	-1117	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
116638	chr19	18309821	18310430	+	0	NA	intron (NM_001252129, intron 2 of 3)	intron (NM_001252129, intron 2 of 3)	12951	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
197662	chr6	85453271	85453950	+	0	NA	intron (NM_002526, intron 1 of 8)	intron (NM_002526, intron 1 of 8)	3527	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
202710	chr6	158835401	158836000	+	0	NA	Intergenic	MIRb|SINE|MIR	-16332	NM_001111077	7430		NM_003379	ENSG00000092820	EZR	CVIL|CVL|HEL-S-105|VIL2	ezrin	protein-coding
80966	chr16	3878821	3880300	+	0	NA	intron (NM_004380, intron 1 of 30)	CpG	560	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
73558	chr15	44290951	44291580	+	0	NA	intron (NM_177974, intron 1 of 8)	AluJb|SINE|Alu	2546	NM_177974	113201		NM_138423	ENSG00000166734	GOLM2	CASC4|H63	golgi membrane protein 2	protein-coding
35838	chr11	2303971	2304430	+	0	NA	exon (NM_139022, exon 3 of 10)	exon (NM_139022, exon 3 of 10)	-1060	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
156164	chr22	40211121	40211380	+	0	NA	intron (NM_015088, intron 1 of 20)	AluJo|SINE|Alu	33325	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
214611	chr7	150714271	150714500	+	0	NA	Intergenic	L1PA8|LINE|L1	-2172	NM_001199577	100527949		NM_001199577	ENSG00000281887	GIMAP1-GIMAP5	-	GIMAP1-GIMAP5 readthrough	protein-coding
189314	chr5	172146321	172146580	+	0	NA	intron (NM_005990, intron 2 of 18)	intron (NM_005990, intron 2 of 18)	41774	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
10832	chr1	77949001	77949600	+	0	NA	non-coding (NR_146540, exon 19 of 23)	non-coding (NR_146540, exon 19 of 23)	29772	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
3412	chr1	15762151	15762450	+	0	NA	intron (NM_001024216, intron 1 of 6)	AluSg7|SINE|Alu	-2199	NM_001024215	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
118163	chr19	35025921	35026530	+	0	NA	3' UTR (NM_001320035, exon 18 of 18)	3' UTR (NM_001320035, exon 18 of 18)	-4245	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
147090	chr20	53844901	53846000	+	0	NA	Intergenic	AluSz6|SINE|Alu	30259	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
2034	chr1	7701871	7702030	+	0	NA	intron (NM_001349613, intron 1 of 11)	intron (NM_001349613, intron 1 of 11)	-2786	NM_001349622	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
81794	chr16	11535921	11536700	+	0	NA	Intergenic	MER76|LTR|ERVL	-9063	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
201006	chr6	140774221	140774500	+	0	NA	Intergenic	Intergenic	90546	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
9100	chr1	45205521	45206980	+	0	NA	exon (NM_020883, exon 1 of 14)	exon (NM_020883, exon 1 of 14)	355	NM_020883	57643		NM_020883	ENSG00000162415	ZSWIM5	-	zinc finger SWIM-type containing 5	protein-coding
104180	chr17	80423501	80423800	+	0	NA	intron (NM_001164638, intron 4 of 7)	intron (NM_001164638, intron 4 of 7)	4232	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
210619	chr7	100441671	100442480	+	0	NA	Intergenic	Intergenic	-5578	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
123813	chr19	55172751	55173050	+	0	NA	3' UTR (NM_003180, exon 9 of 9)	3' UTR (NM_003180, exon 9 of 9)	-6178	NM_001256714	352909		NM_178837	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	dynein axonemal assembly factor 3	protein-coding
204686	chr7	5503801	5504200	+	0	NA	intron (NM_024963, intron 2 of 4)	intron (NM_024963, intron 2 of 4)	-8083	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
41762	chr11	66694401	66695750	+	0	NA	intron (NM_006946, intron 21 of 37)	LTR41C|LTR|ERVL	-17188	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
48825	chr12	12323771	12323930	+	0	NA	Intergenic	L2c|LINE|L2	26392	NM_001363613	54682		NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
185493	chr5	131307021	131307280	+	0	NA	intron (NM_001038702, intron 1 of 4)	L1PA3|LINE|L1	43097	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
31337	chr10	93062151	93063050	+	0	NA	intron (NM_183374, intron 2 of 5)	CpG-3149	1802	NM_183374	340665		NM_183374	ENSG00000187553	CYP26C1	FFDD4	cytochrome P450 family 26 subfamily C member 1	protein-coding
162682	chr3	48932821	48933500	+	0	NA	intron (NM_001349214, intron 3 of 15)	AluJo|SINE|Alu	-13775	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
184095	chr5	93608871	93609030	+	0	NA	Intergenic	Intergenic	11838	NR_031754	100313887		NR_031754	ENSG00000284336	MIR2277	mir-2277	microRNA 2277	ncRNA
207510	chr7	44794601	44795200	+	0	NA	Intergenic	AluJb|SINE|Alu	-1781	NM_001300981	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
157091	chr22	42624501	42625630	+	0	NA	intron (NM_001129819, intron 7 of 8)	intron (NM_001129819, intron 7 of 8)	9820	NR_029422	267010		NR_029422	ENSG00000276027	RNU12	CDAGS|RNU12-1|RNU12L|RNU12P|SCAR33|dJ222E13.7	RNA, U12 small nuclear	snRNA
199826	chr6	127739371	127739730	+	0	NA	intron (NM_001010923, intron 4 of 5).2	AluY|SINE|Alu	115638	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
117011	chr19	18908971	18909730	+	0	NA	intron (NM_007263, intron 3 of 9)	MLT1C|LTR|ERVL-MaLR	10037	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
143455	chr20	30521971	30522130	+	0	NA	Intergenic	Intergenic	-118588	NR_045115	140678		NR_045115		MLLT10P1	MLLT10L|bA348I14.3	MLLT10 pseudogene 1	pseudo
228440	chr9	99830951	99831730	+	0	NA	intron (NM_173200, intron 4 of 8)	intron (NM_173200, intron 4 of 8)	9455	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
54648	chr12	92977271	92977630	+	0	NA	Intergenic	Intergenic	-48155	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
158738	chr3	8970901	8971580	+	0	NA	Intergenic	Intergenic	-7768	NM_020165	56852		NM_020165	ENSG00000070950	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
78151	chr15	90410621	90410880	+	0	NA	intron (NM_003870, intron 2 of 37)	L1PA5|LINE|L1	22508	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
172312	chr4	1610821	1611280	+	0	NA	Intergenic	Intergenic	72941	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
8052	chr1	38816071	38816650	+	0	NA	Intergenic	Intergenic	43412	NM_001271851	64121		NM_022157	ENSG00000116954	RRAGC	GTR2|LNGODS|LNGOS|RAGC|TIB929	Ras related GTP binding C	protein-coding
136414	chr2	176174871	176175530	+	0	NA	non-coding (NR_110468, exon 3 of 3)	non-coding (NR_110468, exon 3 of 3)	2929	NR_110458	401022		NR_033979	ENSG00000224189	HAGLR	HOXD-AS1|MIR7704HG|Mdgt|STEEL	HOXD antisense growth-associated long non-coding RNA	ncRNA
120750	chr19	45403351	45403450	+	0	NA	intron (NM_001142502, intron 1 of 12)	intron (NM_001142502, intron 1 of 12)	1669	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
19618	chr1	179942971	179943130	+	0	NA	Intergenic	L1PA2|LINE|L1	-11760	NM_014810	9857		NM_014810	ENSG00000135837	CEP350	CAP350|GM133	centrosomal protein 350	protein-coding
66730	chr14	64478621	64479330	+	0	NA	3' UTR (NM_001354682, exon 4 of 4)	3' UTR (NM_001354682, exon 4 of 4)	13476	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
203474	chr7	516321	516580	+	0	NA	intron (NM_033023, intron 2 of 5)	intron (NM_033023, intron 2 of 5)	3394	NM_002607	5154		NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
60193	chr13	40382271	40382830	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	98456	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
85458	chr16	50665151	50665880	+	0	NA	TTS (NM_153337)	TTS (NM_153337)	-3340	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
238385	chrX	150333301	150333700	+	0	NA	Intergenic	L1ME4a|LINE|L1	-29817	NM_001177465	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
223585	chr8	144276521	144276850	+	0	NA	intron (NM_015201, intron 2 of 15)	intron (NM_015201, intron 2 of 15)	10232	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
134716	chr2	144513691	144514200	+	0	NA	intron (NR_033258, intron 2 of 2)	intron (NR_033258, intron 2 of 2)	-5669	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
87177	chr16	69346871	69347330	+	0	NA	intron (NM_144676, intron 3 of 3)	L1MB7|LINE|L1	4686	NM_144676	146456		NM_144676	ENSG00000157315	TMED6	PRO34237|SPLL9146|p24g5	transmembrane p24 trafficking protein 6	protein-coding
78858	chr15	100337371	100337850	+	0	NA	intron (NM_139057, intron 2 of 21)	intron (NM_139057, intron 2 of 21)	4365	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
46354	chr11	125902651	125903690	+	0	NA	promoter-TSS (NM_001330438)	promoter-TSS (NM_001330438)	36	NM_031307	83480		NM_031307	ENSG00000110060	PUS3	2610020J05Rik|DEG1|FKSG32|MRT55|NEDMIGS	pseudouridine synthase 3	protein-coding
233862	chrX	1529351	1530200	+	0	NA	intron (NM_178129, intron 1 of 1)	(CTAT)n|Simple_repeat|Simple_repeat	7410	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
181920	chr5	54829051	54829350	+	0	NA	Intergenic	AluJr4|SINE|Alu	-84942	NR_104658	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
3546	chr1	16138601	16138800	+	0	NA	intron (NM_004431, intron 3 of 16)	intron (NM_004431, intron 3 of 16)	17369	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
210787	chr7	100801021	100801630	+	0	NA	Intergenic	Intergenic	-25544	NM_001363494	56996		NM_020246	ENSG00000146828	SLC12A9	CCC6|CIP1|WO3.3|hCCC6	solute carrier family 12 member 9	protein-coding
165223	chr3	72994771	72995150	+	0	NA	Intergenic	(CCTT)n|Simple_repeat|Simple_repeat	-1783	NM_001318026	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
59245	chr13	23916151	23916270	+	0	NA	intron (NR_073430, intron 3 of 4)	L1PA16|LINE|L1	-18708	NR_104426	387911		NM_001007537	ENSG00000205863	C1QTNF9B	CTRP9B	C1q and TNF related 9B	protein-coding
175749	chr4	77741971	77742330	+	0	NA	exon (NM_001286790, exon 8 of 12)	exon (NM_001286790, exon 8 of 12)	76914	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
137769	chr2	199229221	199229480	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	228589	NM_001172509	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
21625	chr1	206585221	206585480	+	0	NA	intron (NM_182665, intron 4 of 4)	intron (NM_182665, intron 4 of 4)	27115	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
207767	chr7	50153951	50154250	+	0	NA	intron (NM_001161834, intron 8 of 8)	intron (NM_001161834, intron 8 of 8)	58217	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
206483	chr7	33052951	33053250	+	0	NA	intron (NM_001374336, intron 1 of 10)	intron (NM_001374336, intron 1 of 10)	9676	NM_001002010	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
194969	chr6	35326021	35326280	+	0	NA	Intergenic	AluSg|SINE|Alu	-16408	NM_001171818	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
165347	chr3	88159621	88159880	+	0	NA	Intergenic	Intergenic	9791	NM_173824	285237		NM_173824	ENSG00000179021	C3orf38	-	chromosome 3 open reading frame 38	protein-coding
231315	chr9	130069821	130070080	+	0	NA	intron (NM_001136557, intron 1 of 19)	AluSx|SINE|Alu	16044	NM_001136557	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
13104	chr1	111623171	111623700	+	0	NA	intron (NM_001291896, intron 1 of 7)	AluSg|SINE|Alu	-3037	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
197916	chr6	89433871	89435030	+	0	NA	intron (NM_014942, intron 1 of 15)	intron (NM_014942, intron 1 of 15)	1272	NM_014942	22881		NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
14215	chr1	143200271	143200850	+	0	NA	Intergenic	Intergenic	222032	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
137835	chr2	200515021	200515480	+	0	NA	Intergenic	Intergenic	-5182	NM_001321548	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
5669	chr1	26319311	26320130	+	0	NA	intron (NM_001803, intron 1 of 1)	intron (NM_001803, intron 1 of 1)	-1455	NM_145345	91544		NM_145345	ENSG00000158062	UBXN11	COA-1|PP2243|SOC|SOCI|UBXD5	UBX domain protein 11	protein-coding
215925	chr8	8273101	8273550	+	0	NA	Intergenic	Intergenic	44755	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
35720	chr11	1948921	1949600	+	0	NA	promoter-TSS (NR_132974)	promoter-TSS (NR_132974)	-71	NR_132974	106635549		NR_132974		SNORD131	-	small nucleolar RNA, C/D box 131	snoRNA
148436	chr20	63972501	63972830	+	0	NA	Intergenic	Intergenic	-2735	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
76965	chr15	78161971	78162500	+	0	NA	exon (NM_005530, exon 6 of 11)	exon (NM_005530, exon 6 of 11)	12873	NM_005530	3419		NM_005530	ENSG00000166411	IDH3A	RP90	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein-coding
75878	chr15	69724601	69725200	+	0	NA	Intergenic	Intergenic	-110334	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
236430	chrX	71352821	71353280	+	0	NA	Intergenic	Intergenic	-13307	NR_104387	6872		NM_004606	ENSG00000147133	TAF1	BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|MRXS33|N-TAF1|NSCL2|OF|P250|TAF(II)250|TAF2A|TAFII-250|TAFII250|XDP	TATA-box binding protein associated factor 1	protein-coding
178554	chr4	151106521	151106800	+	0	NA	Intergenic	AluSx3|SINE|Alu	2833	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
221965	chr8	129975671	129975830	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	32703	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
69071	chr14	92003801	92004300	+	0	NA	exon (NM_004239, exon 11 of 21)	exon (NM_004239, exon 11 of 21)	36009	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
144072	chr20	33684601	33684880	+	0	NA	intron (NM_005225, intron 1 of 6)	intron (NM_005225, intron 1 of 6)	1645	NM_005225	1869		NM_005225	ENSG00000101412	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
183629	chr5	80230321	80230750	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	25513	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
91083	chr17	3241951	3242050	+	0	NA	TTS (NM_003552)	TTS (NM_003552)	1324	NR_145519	653166		NM_003552	ENSG00000255095	OR1D4	OR17-30	olfactory receptor family 1 subfamily D member 4	protein-coding
160470	chr3	30495651	30495950	+	0	NA	Intergenic	Intergenic	-23068	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
75171	chr15	64685851	64686680	+	0	NA	TTS (NM_015042)	TTS (NM_015042)	17016	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
188538	chr5	156137521	156137980	+	0	NA	Intergenic	Intergenic	-189414	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
130	chr1	507371	507530	+	0	NA	Intergenic	AluJr|SINE|Alu	-12005	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
71179	chr14	105048021	105048700	+	0	NA	Intergenic	AluJb|SINE|Alu	17070	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
31906	chr10	100375021	100375280	+	0	NA	intron (NR_026762, intron 1 of 2)	AluSx1|SINE|Alu	1574	NR_026762	90271		NR_026762	ENSG00000235823	OLMALINC	C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS	oligodendrocyte maturation-associated long intergenic non-coding RNA	ncRNA
225147	chr9	33750501	33750780	+	0	NA	promoter-TSS (NM_001197098)	promoter-TSS (NM_001197098)	-39	NM_007343	5646		NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	serine protease 3	protein-coding
76990	chr15	78284951	78285050	+	0	NA	intron (NM_025234, intron 10 of 10)	intron (NM_025234, intron 10 of 10)	14609	NM_025234	80349		NM_025234	ENSG00000140395	SKIC8	REC14|SKI8|WDR61	SKI8 subunit of superkiller complex	protein-coding
27019	chr10	26843151	26843250	+	0	NA	intron (NM_001178116, intron 1 of 11)	AluSx|SINE|Alu	17758	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
82002	chr16	11908201	11908400	+	0	NA	intron (NM_001130007, intron 1 of 14)	intron (NM_001130007, intron 1 of 14)	7656	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
88478	chr16	85083451	85083750	+	0	NA	intron (NM_014732, intron 10 of 12)	intron (NM_014732, intron 10 of 12)	20388	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
20122	chr1	192530101	192530580	+	0	NA	Intergenic	Intergenic	-45433	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
34342	chr10	132189751	132190330	+	0	NA	intron (NM_006426, intron 1 of 13)	intron (NM_006426, intron 1 of 13)	3092	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
203102	chr6	166438351	166438450	+	0	NA	intron (NM_021135, intron 14 of 20)	intron (NM_021135, intron 14 of 20)	26983	NR_046793	100874353		NR_046793	ENSG00000232082	RPS6KA2-IT1	-	RPS6KA2 intronic transcript 1	ncRNA
156932	chr22	42303771	42304550	+	0	NA	Intergenic	Intergenic	-20233	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
91276	chr17	4101121	4101580	+	0	NA	intron (NM_015113, intron 9 of 54)	intron (NM_015113, intron 9 of 54)	41680	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
94241	chr17	28676001	28676280	+	0	NA	intron (NM_003170, intron 6 of 36)	intron (NM_003170, intron 6 of 36)	13935	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
145563	chr20	44310301	44311630	+	0	NA	intron (NM_001080472, intron 1 of 1)	CpG	237	NM_001080472	128486		NM_001080472	ENSG00000197296	FITM2	C20orf142|Fit2|SIDDIS|dJ881L22.2	fat storage inducing transmembrane protein 2	protein-coding
99914	chr17	56934001	56934570	+	0	NA	Intergenic	Intergenic	-20236	NM_005082	7706		NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
138215	chr2	202727801	202728000	+	0	NA	intron (NM_173511, intron 4 of 7)	intron (NM_173511, intron 4 of 7)	92931	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
43899	chr11	88535921	88536180	+	0	NA	intron (NM_001143831, intron 8 of 9)	intron (NM_001143831, intron 8 of 9)	31474	NR_049724	100873989		NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
193261	chr6	29955951	29956050	+	0	NA	Intergenic	AluJo|SINE|Alu	13468	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
212615	chr7	129222921	129223330	+	0	NA	Intergenic	AluY|SINE|Alu	-1905	NM_015328	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
46633	chr11	128678071	128678300	+	0	NA	Intergenic	UCON26|Unknown|Unknown	-8350	NM_001271012	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
211804	chr7	107888001	107888400	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2907	NM_001289751	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
170848	chr3	190617251	190617550	+	0	NA	intron (NR_157352, intron 5 of 10)	intron (NR_157352, intron 5 of 10)	103315	NM_134470	3556		NM_002182	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
221851	chr8	128273571	128274500	+	0	NA	Intergenic	Intergenic	123919	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
17094	chr1	156140901	156143050	+	0	NA	Intergenic	AluSg|SINE|Alu	-7969	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
125997	chr2	25307251	25307350	+	0	NA	intron (NR_135490, intron 2 of 23)	intron (NR_135490, intron 2 of 23)	21421	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
34708	chr10	133479821	133480080	+	0	NA	Intergenic	Intergenic	26022	NR_149718	619207		NM_001033584	ENSG00000214279	SCART1	-	scavenger receptor family member expressed on T cells 1	protein-coding
70229	chr14	100663071	100663730	+	0	NA	intron (NR_024096, intron 1 of 1)	MIR|SINE|MIR	6132	NR_024096	283601		NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA
134133	chr2	134160151	134160450	+	0	NA	intron (NM_001371457, intron 1 of 16)	AluY|SINE|Alu	33175	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
107534	chr18	48475871	48476150	+	0	NA	Intergenic	Intergenic	-63021	NM_014772	9811		NM_014772	ENSG00000134030	CTIF	Gm672|KIAA0427	cap binding complex dependent translation initiation factor	protein-coding
131285	chr2	96101651	96101750	+	0	NA	Intergenic	Intergenic	14871	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
21272	chr1	204401771	204401930	+	0	NA	Intergenic	AluJb|SINE|Alu	9967	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
217300	chr8	27380171	27381350	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	-52610	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
148897	chr21	8465721	8467050	+	0	NA	Intergenic	CpG	25239	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
90126	chr16	90121521	90121800	+	0	NA	intron (NR_126161, intron 3 of 3)	(AGGGTT)n|Simple_repeat|Simple_repeat	19396	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
164748	chr3	69058021	69059100	+	0	NA	intron (NM_003968, intron 11 of 17)	intron (NM_003968, intron 11 of 17)	-6227	NM_001363879	7110		NM_007114	ENSG00000144747	TMF1	ARA160|TMF	TATA element modulatory factor 1	protein-coding
30419	chr10	78981471	78981900	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	85763	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
40487	chr11	64250851	64252880	+	0	NA	intron (NM_001184883, intron 1 of 28)	CpG	335	NM_001184883	5331		NM_000932	ENSG00000149782	PLCB3	SMDCD	phospholipase C beta 3	protein-coding
189087	chr5	170288971	170289500	+	0	NA	intron (NM_005565, intron 2 of 20)	MIRb|SINE|MIR	8542	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
212488	chr7	128542251	128542550	+	0	NA	Intergenic	AluSx1|SINE|Alu	65652	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
152973	chr22	23115551	23115850	+	0	NA	intron (NM_002073, intron 2 of 2)	intron (NM_002073, intron 2 of 2)	26290	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
199922	chr6	127884401	127884980	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	16391	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
80792	chr16	3264201	3265730	+	0	NA	non-coding (NR_033904, exon 1 of 2)	non-coding (NR_033904, exon 1 of 2)	1197	NR_033904	283876		NR_033904	ENSG00000281005	LINC00921	-	long intergenic non-protein coding RNA 921	ncRNA
32998	chr10	110558001	110558450	+	0	NA	Intergenic	FRAM|SINE|Alu	-9470	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
11834	chr1	92949671	92950230	+	0	NA	intron (NM_001006605, intron 1 of 4)	L2c|LINE|L2	11512	NM_001006605	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
214955	chr7	151834321	151834650	+	0	NA	intron (NM_016203, intron 1 of 15)	Tigger17a|DNA|TcMar-Tigger	-19614	NM_001040633	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
226841	chr9	77965401	77965600	+	0	NA	intron (NM_002072, intron 1 of 6)	L1ME1|LINE|L1	66311	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
198232	chr6	98942301	98942500	+	0	NA	intron (NM_001278716, intron 1 of 9)	MSTA|LTR|ERVL-MaLR	5546	NM_001278716	26235		NM_012160	ENSG00000112234	FBXL4	FBL4|FBL5|MTDPS13	F-box and leucine rich repeat protein 4	protein-coding
218015	chr8	38467721	38468100	+	0	NA	promoter-TSS (NM_001174065)	promoter-TSS (NM_001174065)	-65	NM_001174067	2260		NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
84081	chr16	29606071	29606580	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	-7060	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA
191933	chr6	15658401	15658600	+	0	NA	intron (NM_183040, intron 1 of 8)	intron (NM_183040, intron 1 of 8)	4528	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
123286	chr19	53546751	53548530	+	0	NA	intron (NM_001317113, intron 2 of 4)	L1MA7|LINE|L1	-6859	NM_001253801	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
173037	chr4	4866971	4867130	+	0	NA	Intergenic	CpG	7385	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
211085	chr7	102486051	102486650	+	0	NA	intron (NM_001367767, intron 18 of 20)	AluJr|SINE|Alu	-7428	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
81243	chr16	4604321	4604680	+	0	NA	Intergenic	Intergenic	10388	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
40764	chr11	64854801	64856260	+	0	NA	intron (NM_001282444, intron 5 of 6)	intron (NM_001282444, intron 5 of 6)	-10877	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
149136	chr21	17781801	17782600	+	0	NA	intron (NR_038870, intron 2 of 2)	intron (NR_038870, intron 2 of 2)	10309	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
38509	chr11	45886471	45886630	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	899	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
214605	chr7	150686401	150686690	+	0	NA	intron (NM_015660, intron 1 of 2)	intron (NM_015660, intron 1 of 2)	839	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
233966	chrX	2688851	2689350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2195	NM_001321369	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
135691	chr2	168849571	168849930	+	0	NA	intron (NM_052946, intron 7 of 14)	intron (NM_052946, intron 7 of 14)	40680	NM_020675	57405		NM_020675	ENSG00000152253	SPC25	AD024|SPBC25|hSpc25	SPC25 component of NDC80 kinetochore complex	protein-coding
62258	chr13	98562651	98565050	+	0	NA	intron (NM_001286649, intron 1 of 9)	AluY|SINE|Alu	13257	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
214861	chr7	151368051	151368550	+	0	NA	intron (NM_016118, intron 10 of 14)	MLT1J1|LTR|ERVL-MaLR	26488	NM_016118	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
94440	chr17	29159471	29159830	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	17123	NM_001346767	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
217539	chr8	29298801	29299430	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-36045	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
53324	chr12	64615201	64615950	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	5080	NM_178169	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
6031	chr1	27110751	27111130	+	0	NA	intron (NR_046474, intron 1 of 10)	intron (NR_046474, intron 1 of 10)	44185	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
48747	chr12	10722601	10724130	+	0	NA	promoter-TSS (NM_001145426)	promoter-TSS (NM_001145426)	-42	NM_003651	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
169875	chr3	177357221	177357480	+	0	NA	Intergenic	Intergenic	62908	NR_047465	100820709		NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
197812	chr6	87722601	87722830	+	0	NA	Intergenic	Intergenic	-20482	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
55888	chr12	109717821	109718750	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	4460	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
80981	chr16	3960901	3961580	+	0	NA	Intergenic	AluJb|SINE|Alu	-10796	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
169340	chr3	160039071	160039230	+	0	NA	intron (NR_108088, intron 3 of 9)	CpG	18501	NR_104132	730109		NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
101809	chr17	73369621	73370150	+	0	NA	intron (NM_001144952, intron 36 of 44)	AluY|SINE|Alu	-57884	NM_012121	23580		NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein 4	protein-coding
186711	chr5	138953171	138953850	+	0	NA	intron (NM_022464, intron 7 of 9)	intron (NM_022464, intron 7 of 9)	78110	NM_001324008	1495		NM_001903	ENSG00000044115	CTNNA1	CAP102|MDBS2|MDPT2	catenin alpha 1	protein-coding
11017	chr1	84779921	84780480	+	0	NA	Intergenic	Intergenic	-89732	NM_001166295	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
163116	chr3	50124071	50124900	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-23497	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
231807	chr9	132407901	132408300	+	0	NA	Intergenic	Intergenic	-1249	NM_001205296	7270		NM_007344	ENSG00000125482	TTF1	TTF-1|TTF-I	transcription termination factor 1	protein-coding
75711	chr15	68078221	68078730	+	0	NA	intron (NM_001320687, intron 2 of 14)	intron (NM_001320687, intron 2 of 14)	23899	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
71719	chr15	20350671	20351250	+	0	NA	Intergenic	Intergenic	68216	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
137381	chr2	196199921	196200930	+	0	NA	3' UTR (NM_020760, exon 29 of 29)	3' UTR (NM_020760, exon 29 of 29)	-28847	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
200630	chr6	136820801	136821000	+	0	NA	Intergenic	Intergenic	-1692	NM_000288	5191		NM_000288	ENSG00000112357	PEX7	PBD9B|PTS2R|RCDP1|RD	peroxisomal biogenesis factor 7	protein-coding
51189	chr12	50352671	50352830	+	0	NA	exon (NM_001145475, exon 4 of 8)	exon (NM_001145475, exon 4 of 8)	43859	NM_001145475	121006		NM_001145475	ENSG00000185958	FAM186A	-	family with sequence similarity 186 member A	protein-coding
55181	chr12	100554671	100554850	+	0	NA	intron (NM_005123, intron 9 of 10)	intron (NM_005123, intron 9 of 10)	-18924	NM_001363672	283431		NM_174942	ENSG00000139354	GAS2L3	G2L3	growth arrest specific 2 like 3	protein-coding
143329	chr20	25643771	25643950	+	0	NA	intron (NR_126466, intron 3 of 4)	LTR9A1|LTR|ERV1	19635	NR_126467	102724826		NR_126465	ENSG00000213742	ZNF337-AS1	-	ZNF337 antisense RNA 1	ncRNA
99844	chr17	55419821	55420500	+	0	NA	intron (NM_012329, intron 1 of 6)	intron (NM_012329, intron 1 of 6)	1675	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
87925	chr16	79280001	79280200	+	0	NA	Intergenic	Intergenic	320637	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
100136	chr17	58447401	58447800	+	0	NA	intron (NM_001080439, intron 5 of 5)	L1MA3|LINE|L1	-30066	NM_001305544	54894		NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
120578	chr19	44998901	44999100	+	0	NA	Intergenic	AluSq|SINE|Alu	-2464	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
229140	chr9	114481871	114482430	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	21065	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
125432	chr2	11830051	11830850	+	0	NA	Intergenic	Intergenic	6536	NR_036226	100422996		NR_036226	ENSG00000265172	MIR4262	-	microRNA 4262	ncRNA
206090	chr7	27191951	27192050	+	0	NA	Intergenic	Intergenic	6592	NR_002795	221883		NR_002795	ENSG00000240990	HOXA11-AS	HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|LncHOXA11|NCRNA00076	HOXA11 antisense RNA	ncRNA
233998	chrX	3035771	3036000	+	0	NA	Intergenic	Intergenic	-4349	NM_001201538	416		NM_004042	ENSG00000062096	ARSF	ASF	arylsulfatase F	protein-coding
230683	chr9	128723651	128725630	+	0	NA	promoter-TSS (NM_001318015)	promoter-TSS (NM_001318015)	178	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
116591	chr19	18256871	18258280	+	0	NA	exon (NM_025249, exon 4 of 4)	exon (NM_025249, exon 4 of 4)	-2156	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
156511	chr22	41368421	41368680	+	0	NA	intron (NM_001145398, intron 1 of 3)	intron (NM_001145398, intron 1 of 3)	1217	NM_001145398	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
129646	chr2	70161021	70161280	+	0	NA	intron (NR_145967, intron 7 of 8)	intron (NR_145967, intron 7 of 8)	29561	NR_145972	54980		NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
185201	chr5	119409201	119409400	+	0	NA	Intergenic	MIR|SINE|MIR	-43197	NM_001199291	3295		NM_000414	ENSG00000133835	HSD17B4	DBP|MFE-2|MFP-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid 17-beta dehydrogenase 4	protein-coding
132706	chr2	109028451	109028830	+	0	NA	Intergenic	Intergenic	-39420	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
23389	chr1	228206021	228206730	+	0	NA	non-coding (NR_073154, exon 4 of 4)	non-coding (NR_073154, exon 4 of 4)	-1669	NM_052843	84033		NM_052843	ENSG00000154358	OBSCN	ARHGEF30|RHABDO1|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding
231586	chr9	131530721	131531680	+	0	NA	promoter-TSS (NM_001318519)	promoter-TSS (NM_001318519)	63	NM_031432	83549		NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
227553	chr9	92087851	92087950	+	0	NA	intron (NM_001368272, intron 3 of 15)	L1PA3|LINE|L1	27513	NM_006415	10558		NM_006415	ENSG00000090054	SPTLC1	ALS27|HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI	serine palmitoyltransferase long chain base subunit 1	protein-coding
173210	chr4	6886151	6886580	+	0	NA	Intergenic	Intergenic	-23079	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
74692	chr15	62165221	62165480	+	0	NA	promoter-TSS (NM_001007595)	promoter-TSS (NM_001007595)	-65	NM_001007595	388125		NM_001007595	ENSG00000205502	C2CD4B	FAM148B|NLF2	C2 calcium dependent domain containing 4B	protein-coding
155364	chr22	38289121	38289700	+	0	NA	Intergenic	AluJb|SINE|Alu	-16400	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
156836	chr22	41949321	41949950	+	0	NA	Intergenic	Intergenic	-2471	NM_001002876	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
36284	chr11	3805721	3805980	+	0	NA	intron (NR_027017, intron 1 of 7)	AluSc|SINE|Alu	-2160	NR_027018	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
205945	chr7	26091921	26092430	+	0	NA	Intergenic	Intergenic	-60023	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
174302	chr4	38511801	38512000	+	0	NA	intron (NR_149076, intron 1 of 2)	intron (NR_149076, intron 1 of 2)	2133	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
143023	chr20	21074951	21075250	+	0	NA	Intergenic	Intergenic	31258	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
238831	chrX	154442451	154442950	+	0	NA	3' UTR (NM_001493, exon 11 of 11)	3' UTR (NM_001493, exon 11 of 11)	-1441	NM_004699	9130		NM_004699	ENSG00000071859	FAM50A	9F|DXS9928E|HXC-26|HXC26|MRXSA|XAP5	family with sequence similarity 50 member A	protein-coding
100614	chr17	63543901	63544300	+	0	NA	exon (NM_030779, exon 11 of 14)	exon (NM_030779, exon 11 of 14)	-6377	NM_005828	10238		NM_005828	ENSG00000136485	DCAF7	AN11|HAN11|SWAN-1|WDR68	DDB1 and CUL4 associated factor 7	protein-coding
21124	chr1	203638701	203639380	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	11103	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
163634	chr3	52060301	52060630	+	0	NA	Intergenic	Intergenic	-3894	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
149713	chr21	34076651	34077200	+	0	NA	intron (NM_032476, intron 1 of 2)	L3|LINE|CR1	3347	NM_006933	6526		NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
13605	chr1	116380301	116381200	+	0	NA	intron (NM_001160233, intron 1 of 22)	intron (NM_001160233, intron 1 of 22)	-2620	NM_001160234	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
146510	chr20	49908051	49908350	+	0	NA	exon (NM_006038, exon 2 of 3)	exon (NM_006038, exon 2 of 3)	5539	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
87717	chr16	75063101	75063300	+	0	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	53572	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
103850	chr17	79709621	79709980	+	0	NA	non-coding (NR_109783, exon 2 of 2)	non-coding (NR_109783, exon 2 of 2)	2534	NR_109783	100652929		NR_109783	ENSG00000267719	LINC02078	HP09025	long intergenic non-protein coding RNA 2078	ncRNA
119463	chr19	40427801	40428380	+	0	NA	Intergenic	L1MC5a|LINE|L1	-2098	NM_013376	29950		NM_013376	ENSG00000197019	SERTAD1	SEI1|TRIP-Br1|TRIPBR1	SERTA domain containing 1	protein-coding
201167	chr6	142942101	142943150	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	2551	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
131169	chr2	91824901	91825230	+	0	NA	Intergenic	Intergenic	49723	NR_003503	645367		NR_003503		GGT8P	GGT1P1	gamma-glutamyltransferase 8 pseudogene	pseudo
238516	chrX	153685351	153685650	+	0	NA	intron (NM_001366975, intron 2 of 12)	intron (NM_001366975, intron 2 of 12)	2271	NM_001366975	139728		NM_198452	ENSG00000130822	PNCK	BSTK3|CaMK1b	pregnancy up-regulated nonubiquitous CaM kinase	protein-coding
223316	chr8	143814521	143816550	+	0	NA	TTS (NM_014281)	TTS (NM_014281)	238	NM_182706	23513		NM_015356	ENSG00000180900	SCRIB	CRIB1|SCRB1|SCRIB1|Vartul|oSCRIB	scribble planar cell polarity protein	protein-coding
65369	chr14	50541401	50542000	+	0	NA	intron (NM_001127713, intron 1 of 13)	ERVL-E-int|LTR|ERVL	8618	NM_001127713	51062		NM_015915	ENSG00000198513	ATL1	AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1	atlastin GTPase 1	protein-coding
61361	chr13	51122821	51123280	+	0	NA	intron (NR_102431, intron 1 of 4)	intron (NR_102431, intron 1 of 4)	-11822	NM_001351589	647166		NM_001351589	ENSG00000226792	C13orf42	LINC00371|LINC00372	chromosome 13 open reading frame 42	protein-coding
29409	chr10	70167971	70168130	+	0	NA	intron (NM_001142648, intron 1 of 7)	intron (NM_001142648, intron 1 of 7)	2464	NM_001142648	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
161012	chr3	37806271	37806630	+	0	NA	intron (NM_002207, intron 27 of 27)	intron (NM_002207, intron 27 of 27)	55330	NR_110532	101928153		NR_110531	ENSG00000235257	ITGA9-AS1	-	ITGA9 antisense RNA 1	ncRNA
12740	chr1	109561801	109562600	+	0	NA	intron (NM_006496, intron 1 of 8)	intron (NM_006496, intron 1 of 8)	13585	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
185080	chr5	118062221	118062300	+	0	NA	intron (NR_104997, intron 2 of 2)	L1PA16|LINE|L1	-220314	NR_104609	100505811		NR_104609	ENSG00000250427	LINC02148	HNCAT21	long intergenic non-protein coding RNA 2148	ncRNA
230784	chr9	128929151	128929450	+	0	NA	intron (NM_174933, intron 4 of 11)	AluJo|SINE|Alu	7017	NM_001100877	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
162557	chr3	48650201	48651250	+	0	NA	intron (NM_001407, intron 15 of 34)	intron (NM_001407, intron 15 of 34)	-6445	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
168082	chr3	138185371	138185880	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-1623	NM_213654	25852		NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
199044	chr6	111473671	111473830	+	0	NA	intron (NM_001286432, intron 2 of 33)	intron (NM_001286432, intron 2 of 33)	9468	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
113479	chr19	10000021	10000480	+	0	NA	intron (NM_015719, intron 8 of 66)	MER87B|LTR|ERV1	10254	NM_015719	50509		NM_015719	ENSG00000080573	COL5A3	-	collagen type V alpha 3 chain	protein-coding
20274	chr1	194290871	194291230	+	0	NA	Intergenic	Intergenic	986305	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
105195	chr17	82305221	82305500	+	0	NA	Intergenic	Intergenic	12248	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
92524	chr17	8924651	8924950	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	-12283	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
146767	chr20	50874621	50874880	+	0	NA	intron (NM_198799, intron 4 of 4)	G-rich|Low_complexity|Low_complexity	35041	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
237211	chrX	108640621	108640880	+	0	NA	intron (NM_033380, intron 36 of 50)	L1MB3|LINE|L1	95627	NM_003604	8471		NM_003604	ENSG00000133124	IRS4	CHNG9|IRS-4|PY160	insulin receptor substrate 4	protein-coding
59032	chr13	20419621	20420450	+	0	NA	intron (NM_015974, intron 5 of 7)	intron (NM_015974, intron 5 of 7)	13811	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
156497	chr22	41288051	41288930	+	0	NA	intron (NM_001317930, intron 1 of 15)	intron (NM_001317930, intron 1 of 15)	-2303	NM_001278651	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
149614	chr21	33380171	33381600	+	0	NA	Intergenic	Intergenic	-22011	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
163733	chr3	52315371	52315750	+	0	NA	promoter-TSS (NM_015512)	promoter-TSS (NM_015512)	-759	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
116417	chr19	18004671	18005130	+	0	NA	intron (NM_001025604, intron 1 of 7)	AluSz|SINE|Alu	-3270	NM_001286826	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
129990	chr2	74029851	74030180	+	0	NA	intron (NM_001366022, intron 2 of 10)	intron (NM_001366022, intron 2 of 10)	27323	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
164253	chr3	57227271	57228850	+	0	NA	promoter-TSS (NM_001376061)	promoter-TSS (NM_001376061)	331	NM_012096	26060		NM_012096	ENSG00000157500	APPL1	APPL|DIP13alpha|MODY14	adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1	protein-coding
147483	chr20	59148401	59149150	+	0	NA	intron (NM_001384354, intron 2 of 7)	intron (NM_001384354, intron 2 of 7)	-15046	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
67049	chr14	67676121	67676680	+	0	NA	TTS (NM_001252650)	TTS (NM_001252650)	-1768	NM_006370	10490		NM_006370	ENSG00000100568	VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
100713	chr17	63850521	63850850	+	0	NA	Intergenic	Intergenic	-6331	NR_002947	146771		NR_002947	ENSG00000293480	TCAM1P	TCAM1	testicular cell adhesion molecule 1, pseudogene	pseudo
133148	chr2	112683151	112683450	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	37361	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
53968	chr12	74489701	74489900	+	0	NA	Intergenic	Intergenic	-48035	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
50140	chr12	45725421	45726330	+	0	NA	non-coding (NR_028408, exon 1 of 1)	non-coding (NR_028408, exon 1 of 1)	2046	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
19769	chr1	182087021	182087680	+	0	NA	Intergenic	Intergenic	-25638	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
199450	chr6	117600101	117600500	+	0	NA	intron (NM_020399, intron 1 of 8)	MSTC|LTR|ERVL-MaLR	2211	NM_001017408	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
167757	chr3	132435221	132435500	+	0	NA	intron (NM_015268, intron 2 of 55)	intron (NM_015268, intron 2 of 55)	17858	NM_015268	23317		NM_015268	ENSG00000138246	DNAJC13	PARK21|RME8	DnaJ heat shock protein family (Hsp40) member C13	protein-coding
204700	chr7	5517201	5520000	+	0	NA	intron (NR_126168, intron 1 of 3)	AluSq2|SINE|Alu	4746	NR_126168	221946		NR_126168		LOC221946	-	uncharacterized LOC221946	ncRNA
138201	chr2	202672951	202673250	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	38131	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
86882	chr16	67983621	67984150	+	0	NA	Intergenic	Intergenic	-3386	NM_001129758	64180		NM_022357	ENSG00000141096	DPEP3	MBD3	dipeptidase 3	protein-coding
30913	chr10	87085821	87086080	+	0	NA	intron (NM_001318906, intron 1 of 13)	intron (NM_001318906, intron 1 of 13)	8137	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
230266	chr9	127914521	127915050	+	0	NA	exon (NM_175039, exon 3 of 6)	exon (NM_175039, exon 3 of 6)	2241	NM_175040	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
215768	chr8	2091471	2091780	+	0	NA	intron (NM_003970, intron 15 of 36).2	intron (NM_003970, intron 15 of 36).2	15036	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
111499	chr19	3975001	3976400	+	0	NA	TTS (NM_001961)	TTS (NM_001961)	-4601	NM_001375658	1613		NM_001348	ENSG00000167657	DAPK3	DLK|ZIP|ZIPK	death associated protein kinase 3	protein-coding
69263	chr14	93041571	93041930	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	-4776	NM_001363707	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
151419	chr21	46095971	46096350	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-1952	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
212601	chr7	129134701	129135100	+	0	NA	Intergenic	Intergenic	8629	NR_002144	407835		NR_002144		LOC407835	-	mitogen-activated protein kinase kinase 2 pseudogene	pseudo
79067	chr16	154031	155350	+	0	NA	TTS (NM_005332)	TTS (NM_005332)	2046	NM_005332	3050		NM_005332	ENSG00000130656	HBZ	HBAZ|HBZ-T1|HBZ1	hemoglobin subunit zeta	protein-coding
166147	chr3	111561551	111562130	+	0	NA	intron (NR_134917, intron 2 of 14)	L1PA2|LINE|L1	19643	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
22148	chr1	212062101	212062300	+	0	NA	intron (NM_001286229, intron 4 of 12)	intron (NM_001286229, intron 4 of 12)	-10149	NR_026911	100131205		NR_026911	ENSG00000220749	RPL21P28	RPL21_8_160	ribosomal protein L21 pseudogene 28	pseudo
222654	chr8	141171901	141172530	+	0	NA	intron (NM_014957, intron 13 of 22)	intron (NM_014957, intron 13 of 22)	43626	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
221728	chr8	127567051	127567350	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-85061	NR_117100	727677		NR_024393	ENSG00000246228	CASC8	CARLO1|CARLo-1|LINC00860	cancer susceptibility 8	ncRNA
177359	chr4	110211021	110211650	+	0	NA	Intergenic	Intergenic	-12720	NM_024090	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
53094	chr12	57749871	57750680	+	0	NA	TTS (NM_005981)	TTS (NM_005981)	-1593	NR_106817	102466729		NR_106817	ENSG00000283621	MIR6759	hsa-mir-6759	microRNA 6759	ncRNA
139193	chr2	219244951	219246050	+	0	NA	promoter-TSS (NM_001330213)	promoter-TSS (NM_001330213)	21	NM_001330215	8576		NM_003691	ENSG00000115661	STK16	KRCT|MPSK|PKL12|PSK|TSF1|hPSK	serine/threonine kinase 16	protein-coding
7445	chr1	33024701	33025530	+	0	NA	intron (NR_134976, intron 1 of 5)	AluSg|SINE|Alu	11768	NM_001625	204		NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
96835	chr17	41970771	41971380	+	0	NA	intron (NM_033133, intron 2 of 3)	intron (NM_033133, intron 2 of 3)	3278	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
85940	chr16	57143501	57143900	+	0	NA	intron (NM_152727, intron 14 of 15)	intron (NM_152727, intron 14 of 15)	38850	NM_001354098	80011		NM_024946	ENSG00000172775	PSME3IP1	C16orf94|CDA018|CDA10|FAM192A|NIP30|PIP30	proteasome activator subunit 3 interacting protein 1	protein-coding
28085	chr10	43374121	43374780	+	0	NA	intron (NM_173160, intron 3 of 8)	intron (NM_173160, intron 3 of 8)	2806	NM_001184963	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
19538	chr1	178724671	178725800	+	0	NA	promoter-TSS (NM_152663)	promoter-TSS (NM_152663)	-9	NM_152663	55103		NM_018037	ENSG00000116191	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
20754	chr1	200984951	200985050	+	0	NA	intron (NM_017596, intron 26 of 33)	intron (NM_017596, intron 26 of 33)	38714	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
222904	chr8	142809201	142809400	+	0	NA	Intergenic	(TGTGTG)n|Simple_repeat|Simple_repeat	-22761	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
43422	chr11	77473201	77474850	+	0	NA	promoter-TSS (NM_001376283)	promoter-TSS (NM_001376283)	69	NM_001376277	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
212951	chr7	130946201	130946830	+	0	NA	intron (NR_109853, intron 4 of 5)	intron (NR_109853, intron 4 of 5)	33051	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
187973	chr5	149471271	149471430	+	0	NA	Intergenic	L2a|LINE|L2	40704	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
22841	chr1	225446771	225447000	+	0	NA	Intergenic	Intergenic	-18030	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
65167	chr14	49585021	49587700	+	0	NA	promoter-TSS (NM_001030001)	promoter-TSS (NM_001030001)	20	NM_001032	6235		NM_001032	ENSG00000213741	RPS29	DBA13|S29|uS14	ribosomal protein S29	protein-coding
158489	chr3	12851	13400	+	0	NA	intron (NR_110824, intron 1 of 3)	AluSp|SINE|Alu	1374	NR_110824	102723448		NR_110824	ENSG00000223587	LINC01986	-	long intergenic non-protein coding RNA 1986	ncRNA
88036	chr16	81424801	81425300	+	0	NA	Intergenic	Intergenic	-20120	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
29670	chr10	72036801	72037200	+	0	NA	Intergenic	AluY|SINE|Alu	51551	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
78211	chr15	90599071	90599230	+	0	NA	intron (NM_001042574, intron 3 of 14)	intron (NM_001042574, intron 3 of 14)	-61084	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
222753	chr8	141416351	141416930	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-4748	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
49143	chr12	14941271	14942030	+	0	NA	TTS (NM_001321420)	TTS (NM_001321420)	-3113	NM_152321	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
97190	chr17	42684471	42684980	+	0	NA	intron (NM_003632, intron 3 of 23)	AluSg7|SINE|Alu	2194	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
210735	chr7	100627851	100628580	+	0	NA	intron (NM_003227, intron 11 of 17)	intron (NM_003227, intron 11 of 17)	5435	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
34013	chr10	124700351	124701130	+	0	NA	intron (NM_014661, intron 2 of 4)	intron (NM_014661, intron 2 of 4)	-3288	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
64427	chr14	24190321	24191330	+	0	NA	intron (NM_001289006, intron 4 of 5).2	intron (NM_001289006, intron 4 of 5).2	-1907	NR_051979	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
137506	chr2	197167821	197168080	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-30041	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
91548	chr17	5034151	5034650	+	0	NA	intron (NM_001104577, intron 2 of 4)	intron (NM_001104577, intron 2 of 4)	1026	NM_017986	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
138080	chr2	202030051	202030350	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-4387	NM_003507	8324		NM_003507	ENSG00000155760	FZD7	FzE3	frizzled class receptor 7	protein-coding
4674	chr1	22563251	22563830	+	0	NA	promoter-TSS (NM_001006943)	promoter-TSS (NM_001006943)	51	NM_020526	2046		NM_020526	ENSG00000070886	EPHA8	EEK|EK3|HEK3	EPH receptor A8	protein-coding
38421	chr11	45089801	45090000	+	0	NA	Intergenic	Intergenic	-4259	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
212865	chr7	130861171	130862230	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	15110	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
45247	chr11	117987101	117988000	+	0	NA	intron (NR_026691, intron 2 of 7)	intron (NR_026691, intron 2 of 7)	1156	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
570	chr1	1266621	1266880	+	0	NA	intron (NM_194315, intron 2 of 7)	AluY|SINE|Alu	7104	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
120986	chr19	45733971	45734130	+	0	NA	promoter-TSS (NM_001329633)	promoter-TSS (NM_001329633)	611	NM_001310124	388553		NM_001310124	ENSG00000237452	MEIOSIN	BHMG1|HMGDC	meiosis initiator	protein-coding
97165	chr17	42608421	42610300	+	0	NA	promoter-TSS (NM_001070)	promoter-TSS (NM_001070)	14	NM_178126	162427		NM_178126	ENSG00000141699	RETREG3	FAM134C	reticulophagy regulator family member 3	protein-coding
70500	chr14	102139051	102140570	+	0	NA	promoter-TSS (NM_001353667)	promoter-TSS (NM_001353667)	-42	NM_001330228	91833		NM_144574	ENSG00000140153	WDR20	Bun107|DMR	WD repeat domain 20	protein-coding
14155	chr1	121186421	121187480	+	0	NA	5' UTR (NM_001329984, exon 2 of 10)	5' UTR (NM_001329984, exon 2 of 10)	1975	NM_001271872	653464		NM_001271872	ENSG00000171943	SRGAP2C	SRGAP2P1	SLIT-ROBO Rho GTPase activating protein 2C	protein-coding
68696	chr14	90406421	90407630	+	0	NA	3' UTR (NM_001363670, exon 6 of 6)	3' UTR (NM_001363670, exon 6 of 6)	8775	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
131010	chr2	87824751	87825300	+	0	NA	intron (NM_001024457, intron 1 of 22).2	intron (NM_001024457, intron 1 of 22).2	742	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
238337	chrX	149543221	149543480	+	0	NA	intron (NM_001324279, intron 2 of 5)	L2|LINE|L2	-1170	NM_001171909	91966		NM_178124	ENSG00000197620	EOLA1	CXorf40|CXorf40A	endothelium and lymphocyte associated ASCH domain 1	protein-coding
223537	chr8	144140601	144140800	+	0	NA	3' UTR (NM_016458, exon 6 of 6)	3' UTR (NM_016458, exon 6 of 6)	2926	NM_016458	51236		NM_016458	ENSG00000235173	HGH1	BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B	HGH1 homolog	protein-coding
23187	chr1	226944051	226944150	+	0	NA	intron (NM_020247, intron 1 of 14)	G-rich|Low_complexity|Low_complexity	3806	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
108339	chr18	67200071	67200550	+	0	NA	Intergenic	Intergenic	118726	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
110107	chr19	1555601	1556000	+	0	NA	exon (NM_001174118, exon 2 of 3)	exon (NM_001174118, exon 2 of 3)	12258	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
231978	chr9	133238071	133238800	+	0	NA	Intergenic	Intergenic	-29185	NR_110242	29989		NM_014581	ENSG00000171102	OBP2B	LCN14|OBPIIb	odorant binding protein 2B	protein-coding
51387	chr12	51907051	51907780	+	0	NA	promoter-TSS (NM_000020)	promoter-TSS (NM_000020)	-89	NM_000020	94		NM_000020	ENSG00000139567	ACVRL1	ACVRLK1|ALK-1|ALK1|HHT|HHT2|ORW2|SKR3|TSR-I	activin A receptor like type 1	protein-coding
212739	chr7	129908451	129908750	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	44360	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
25602	chr10	8058271	8058830	+	0	NA	exon (NM_002051, exon 3 of 6)	exon (NM_002051, exon 3 of 6)	3862	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
214367	chr7	149662451	149662930	+	0	NA	Intergenic	L1PBa|LINE|L1	-37900	NR_027789	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
56555	chr12	116960171	116960430	+	0	NA	intron (NM_012174, intron 4 of 10)	intron (NM_012174, intron 4 of 10)	27037	NR_103809	100506551		NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA
113446	chr19	9830201	9830900	+	0	NA	TTS (NM_001048241)	TTS (NM_001048241)	2632	NM_024292	59286		NM_024292	ENSG00000198258	UBL5	HUB1	ubiquitin like 5	protein-coding
62778	chr13	108409621	108410200	+	0	NA	Intergenic	Intergenic	140192	NM_006573	10673		NM_006573	ENSG00000102524	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4	TNF superfamily member 13b	protein-coding
44798	chr11	113532721	113533030	+	0	NA	Intergenic	Intergenic	-57477	NM_000795	1813		NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
207889	chr7	50403171	50403530	+	0	NA	3' UTR (NM_001291842, exon 5 of 5)	3' UTR (NM_001291842, exon 5 of 5)	47000	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
37827	chr11	33161191	33162400	+	0	NA	promoter-TSS (NM_001326)	promoter-TSS (NM_001326)	138	NR_034027	338739		NR_034027	ENSG00000247151	CSTF3-DT	CSTF3-AS1	CSTF3 divergent transcript	ncRNA
137887	chr2	200849571	200850780	+	0	NA	Intergenic	AluSp|SINE|Alu	14386	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
108033	chr18	59070401	59070750	+	0	NA	Intergenic	Intergenic	34896	NR_024021	390858		NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo
210869	chr7	101140401	101140600	+	0	NA	Intergenic	Intergenic	13396	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
123663	chr19	54850251	54850750	+	0	NA	promoter-TSS (NM_006737).12	promoter-TSS (NM_006737).12	57	NM_006737	3812		NM_006737	ENSG00000240403	KIR3DL2	3DL2|CD158K|KIR-3DL2|NKAT-4|NKAT4|NKAT4B|p140	killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 2	protein-coding
231034	chr9	129609311	129610200	+	0	NA	intron (NM_001286796, intron 1 of 3)	intron (NM_001286796, intron 1 of 3)	871	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
103782	chr17	79005451	79006450	+	0	NA	intron (NM_001159772, intron 1 of 5)	intron (NM_001159772, intron 1 of 5)	3814	NM_001159772	124583		NM_138793	ENSG00000171302	CANT1	DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
29521	chr10	70786901	70787250	+	0	NA	Intergenic	Intergenic	-1698	NR_134531	219793		NM_152710	ENSG00000166220	TBATA	C10orf27|SPATIAL	thymus, brain and testes associated	protein-coding
33809	chr10	123159651	123159750	+	0	NA	intron (NM_004725, intron 4 of 7)	intron (NM_004725, intron 4 of 7)	5298	NM_004725	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
46513	chr11	128445621	128446400	+	0	NA	Intergenic	L1PA6|LINE|L1	76300	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
57104	chr12	121065501	121065700	+	0	NA	Intergenic	AluJb|SINE|Alu	-26358	NM_198213	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
186442	chr5	136132551	136133750	+	0	NA	intron (NM_001001420, intron 1 of 6)	CpG	305	NM_001001419	4090		NM_005903	ENSG00000113658	SMAD5	DWFC|JV5-1|MADH5	SMAD family member 5	protein-coding
194427	chr6	33113371	33114400	+	0	NA	intron (NR_001435, intron 1 of 4)	intron (NR_001435, intron 1 of 4)	1369	NR_001435	3116		NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo
231301	chr9	130048001	130048630	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5126	NM_001363755	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
230298	chr9	127947471	127947830	+	0	NA	intron (NM_203305, intron 3 of 7)	L2b|LINE|L2	3064	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
177053	chr4	107994151	107994450	+	0	NA	intron (NM_001184705, intron 1 of 8)	intron (NM_001184705, intron 1 of 8)	4411	NM_005327	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
131237	chr2	95669001	95669200	+	0	NA	Intergenic	Intergenic	77099	NM_138800	129868		NM_138800	ENSG00000144015	TRIM43	TRIM43A	tripartite motif containing 43	protein-coding
8487	chr1	40817301	40817500	+	0	NA	intron (NM_172163, intron 2 of 12)	intron (NM_172163, intron 2 of 12)	33613	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
201239	chr6	143872051	143872430	+	0	NA	intron (NM_001013623, intron 1 of 7)	HERVL-int|LTR|ERVL	7766	NM_001013623	153918		NM_001013623	ENSG00000118491	ZC2HC1B	C6orf94|FAM164B|dJ468K18.5	zinc finger C2HC-type containing 1B	protein-coding
188691	chr5	157290301	157290830	+	0	NA	intron (NM_001291721, intron 3 of 29)	MLT1D|LTR|ERVL-MaLR	21241	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
127477	chr2	42233221	42233480	+	0	NA	intron (NM_019063, intron 1 of 22)	AluYm1|SINE|Alu	-63119	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226347	chr9	69758871	69760240	+	0	NA	intron (NM_001366937, intron 1 of 7)	CpG	456	NM_001366937	375743		NM_001099666	ENSG00000188647	PTAR1	-	protein prenyltransferase alpha subunit repeat containing 1	protein-coding
98623	chr17	47789421	47790380	+	0	NA	Intergenic	CpG	31894	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
226223	chr9	65825171	65825530	+	0	NA	Intergenic	Intergenic	34229	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
159265	chr3	12952621	12953280	+	0	NA	intron (NM_001134382, intron 1 of 13)	L2|LINE|L2	14780	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
233612	chrX	365521	365900	+	0	NA	intron (NM_013239, intron 1 of 12)	AluSz|SINE|Alu	21197	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
73746	chr15	45338221	45338680	+	0	NA	Intergenic	Intergenic	40094	NM_001482	2628		NM_001482	ENSG00000171766	GATM	AGAT|AT|CCDS3|FRTS|FRTS1|RFS	glycine amidinotransferase	protein-coding
189035	chr5	169649551	169650130	+	0	NA	intron (NR_156756, intron 1 of 52)	AluSz|SINE|Alu	12565	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
62941	chr13	111354951	111355050	+	0	NA	Intergenic	Intergenic	34358	NM_152324	121793		NM_152324	ENSG00000153495	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
215796	chr8	2202951	2203250	+	0	NA	Intergenic	Intergenic	126511	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
77544	chr15	84747171	84749200	+	0	NA	promoter-TSS (NM_014630)	promoter-TSS (NM_014630)	-407	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
95606	chr17	37522251	37522750	+	0	NA	intron (NM_001163544, intron 18 of 20).2	AluJb|SINE|Alu	32609	NM_007026	11072		NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
106672	chr18	23180471	23180630	+	0	NA	intron (NM_138375, intron 1 of 9)	AluJo|SINE|Alu	24725	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
41996	chr11	67390351	67390550	+	0	NA	intron (NR_024469, intron 3 of 3)	AluSc|SINE|Alu	-1536	NM_004584	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
170910	chr3	194131071	194131630	+	0	NA	Intergenic	Intergenic	-4798	NM_005524	3280		NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
173804	chr4	17786471	17786630	+	0	NA	Intergenic	LTR102_Mam|LTR|ERVL	-4929	NM_015688	27146		NM_015688	ENSG00000047662	FAM184B	-	family with sequence similarity 184 member B	protein-coding
93000	chr17	17181171	17181330	+	0	NA	intron (NM_201274, intron 23 of 23)	intron (NM_201274, intron 23 of 23)	25083	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
139342	chr2	219612901	219613950	+	0	NA	intron (NM_052902, intron 20 of 24)	intron (NM_052902, intron 20 of 24)	-14145	NM_001326559	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
18363	chr1	161307101	161307730	+	0	NA	exon (NM_000530, exon 2 of 6)	exon (NM_000530, exon 2 of 6)	2553	NM_000530	4359		NM_000530	ENSG00000158887	MPZ	CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0	myelin protein zero	protein-coding
89341	chr16	88755421	88756250	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	13068	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
77052	chr15	78871101	78871500	+	0	NA	Intergenic	AluSp|SINE|Alu	-1481	NM_206839	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
117005	chr19	18904721	18905380	+	0	NA	intron (NM_007263, intron 5 of 9)	intron (NM_007263, intron 5 of 9)	-8323	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
129679	chr2	70341221	70341780	+	0	NA	Intergenic	Intergenic	-39433	NM_001329753	84908		NM_032822	ENSG00000035141	FAM136A	-	family with sequence similarity 136 member A	protein-coding
123764	chr19	55090701	55090900	+	0	NA	TTS (NM_001271618)	TTS (NM_001271618)	10408	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
32064	chr10	101080951	101081650	+	0	NA	Intergenic	Intergenic	14917	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
203169	chr6	167094951	167095880	+	0	NA	Intergenic	Intergenic	-16392	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
192816	chr6	26902301	26902750	+	0	NA	intron (NR_003504, intron 3 of 8)	AluY|SINE|Alu	54029	NR_003504	387036		NM_001033523	ENSG00000290474	GUSBP2	GUSBL1|GUSBP4|SMA3-L|SMAC3L|SMAC3L2|b55C20.1|bA239L20.1|bA239L20.5|bGLU-Lp	GUSB pseudogene 2	pseudo
133167	chr2	112757221	112757750	+	0	NA	intron (NR_130712, intron 3 of 9)	AluSx3|SINE|Alu	7124	NM_152515	150468		NM_152515	ENSG00000169607	CKAP2L	-	cytoskeleton associated protein 2 like	protein-coding
141570	chr2	241562271	241562430	+	0	NA	exon (NM_032515, exon 3 of 5)	exon (NM_032515, exon 3 of 5)	-3207	NR_033346	100379249		NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	ncRNA
184544	chr5	102751871	102752030	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2833	NM_001319943	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
174781	chr4	47913851	47915150	+	0	NA	promoter-TSS (NM_001278624)	promoter-TSS (NM_001278624)	83	NM_001278624	152518		NM_152995	ENSG00000170448	NFXL1	CDZFP|HOZFP|OZFP|URCC5	nuclear transcription factor, X-box binding like 1	protein-coding
168633	chr3	149812421	149813930	+	0	NA	promoter-TSS (NM_001378285)	promoter-TSS (NM_001378285)	-40	NM_001378287	11342		NM_007282	ENSG00000082996	RNF13	DEE73|EIEE73|RZF	ring finger protein 13	protein-coding
147158	chr20	56420771	56421580	+	0	NA	intron (NM_001164114, intron 1 of 5)	MER113A|DNA|hAT-Charlie	8915	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
45589	chr11	118888501	118888700	+	0	NA	intron (NM_001716, intron 1 of 1)	L3|LINE|CR1	4708	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
41581	chr11	66340071	66340400	+	0	NA	intron (NM_015399, intron 6 of 9)	intron (NM_015399, intron 6 of 9)	-3461	NM_001363559	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
35517	chr11	1553471	1554680	+	0	NA	TTS (NM_004420)	TTS (NM_004420)	18196	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
231850	chr9	132812471	132812650	+	0	NA	intron (NM_001371771, intron 10 of 12)	intron (NM_001371771, intron 10 of 12)	65724	NM_001317958	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
61178	chr13	49140971	49141330	+	0	NA	intron (NM_001079673, intron 7 of 25)	MIRc|SINE|MIR	30833	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
148024	chr20	63134171	63135830	+	0	NA	Intergenic	Intergenic	-32681	NR_003245	768097		NR_003245	ENSG00000231133	HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B	ncRNA
91937	chr17	7336221	7337480	+	0	NA	intron (NM_014716, intron 1 of 21)	intron (NM_014716, intron 1 of 21)	321	NM_014716	9744		NM_014716	ENSG00000072818	ACAP1	CENTB1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding
192531	chr6	25055671	25056750	+	0	NA	Intergenic	Intergenic	-13922	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
146748	chr20	50810351	50810850	+	0	NA	intron (NM_198799, intron 1 of 4)	AluY|SINE|Alu	15539	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
72317	chr15	31257201	31257700	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-26588	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
65879	chr14	55104251	55104550	+	0	NA	Intergenic	Intergenic	-24852	NM_001357678	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
61871	chr13	77028301	77028680	+	0	NA	Intergenic	Intergenic	-1331	NM_012158	26224		NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A|IDDSFAS	F-box and leucine rich repeat protein 3	protein-coding
50017	chr12	42417971	42418130	+	0	NA	intron (NM_201515, intron 10 of 10)	AluY|SINE|Alu	65565	NM_001144881	144165		NM_153026	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle planar cell polarity protein 1	protein-coding
237354	chrX	118694601	118694750	+	0	NA	Intergenic	AluSx|SINE|Alu	-32931	NM_001560	3597		NM_001560	ENSG00000131724	IL13RA1	CD213A1|CT19|IL-13Ra|NR4	interleukin 13 receptor subunit alpha 1	protein-coding
67310	chr14	69610951	69612950	+	0	NA	intron (NM_014734, intron 1 of 5)	CpG	354	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
64846	chr14	35202621	35202880	+	0	NA	intron (NM_001256678, intron 4 of 6)	AluJr|SINE|Alu	-75808	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
160881	chr3	33658971	33659830	+	0	NA	promoter-TSS (NM_001207044)	promoter-TSS (NM_001207044)	-293	NM_001375715	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
103586	chr17	78705121	78705580	+	0	NA	intron (NM_017456, intron 3 of 12)	intron (NM_017456, intron 3 of 12)	11682	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
53102	chr12	57763801	57764000	+	0	NA	intron (NM_000785, intron 7 of 8)	intron (NM_000785, intron 7 of 8)	3178	NM_000785	1594		NM_000785	ENSG00000111012	CYP27B1	CP2B|CYP1|CYP1alpha|CYP27B|P450c1|PDDR|VDD1|VDDR|VDDRI|VDR	cytochrome P450 family 27 subfamily B member 1	protein-coding
28959	chr10	63237451	63237550	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	31723	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
182324	chr5	59037371	59037530	+	0	NA	intron (NM_001364603, intron 7 of 15)	intron (NM_001364603, intron 7 of 15)	2026	NM_001197222	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
101998	chr17	74767921	74769180	+	0	NA	exon (NM_004252, exon 6 of 6)	exon (NM_004252, exon 6 of 6)	7795	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
10189	chr1	61741651	61743130	+	0	NA	promoter-TSS (NM_001350145)	promoter-TSS (NM_001350145)	-90	NM_001350145	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
99883	chr17	56680171	56680330	+	0	NA	Intergenic	Intergenic	86551	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
151571	chr21	46604721	46605530	+	0	NA	promoter-TSS (NM_006272)	promoter-TSS (NM_006272)	-43	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
200937	chr6	139161901	139163200	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	27470	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
44433	chr11	104700651	104701130	+	0	NA	Intergenic	Intergenic	-91588	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
130939	chr2	87499801	87501500	+	0	NA	intron (NR_146461, intron 2 of 2)	L1MB3|LINE|L1	30700	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
73542	chr15	43832171	43833080	+	0	NA	intron (NM_024908, intron 2 of 12)	AluSx|SINE|Alu	5623	NM_001167941	79968		NM_024908	ENSG00000092470	WDR76	CDW14|CMR1	WD repeat domain 76	protein-coding
124418	chr19	58453301	58454180	+	0	NA	exon (NM_207395, exon 2 of 4)	exon (NM_207395, exon 2 of 4)	2118	NM_207395	388569		NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
201148	chr6	142912951	142914300	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	31551	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
171333	chr3	195993971	195994850	+	0	NA	Intergenic	LTR13|LTR|ERVK	-4131	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
60228	chr13	40550601	40551000	+	0	NA	Intergenic	Intergenic	-69794	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
209173	chr7	75363671	75364030	+	0	NA	intron (NR_040583, intron 4 of 9)	AluSc|SINE|Alu	4650	NR_040583	54441		NM_018991	ENSG00000290951	STAG3L1	STAG3L1P|STAG3L2|STAG3L3	STAG3 cohesin complex component like 1 (pseudogene)	pseudo
18001	chr1	160541451	160541550	+	0	NA	3' UTR (NM_001184879, exon 8 of 8)	3' UTR (NM_001184879, exon 8 of 8)	-18245	NM_001184714	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
168734	chr3	150766001	150766800	+	0	NA	Intergenic	Intergenic	-3231	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
226431	chr9	71285171	71285400	+	0	NA	intron (NM_001366141, intron 1 of 24)	intron (NM_001366141, intron 1 of 24)	161686	NM_001366142	80036		NM_020952	ENSG00000083067	TRPM3	CTRCT50|GON-2|LTRPC3|MLSN2|NEDFSS	transient receptor potential cation channel subfamily M member 3	protein-coding
50834	chr12	49109621	49111580	+	0	NA	5' UTR (NM_001352165, exon 2 of 17)	5' UTR (NM_001352165, exon 2 of 17)	300	NM_001352166	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
215592	chr7	158945221	158945480	+	0	NA	intron (NM_001350914, intron 24 of 24)	intron (NM_001350914, intron 24 of 24)	-63004	NR_024394	154822		NM_198345	ENSG00000231419	LINC00689	STORM	long intergenic non-protein coding RNA 689	ncRNA
111477	chr19	3952601	3953730	+	0	NA	Intergenic	AluJr|SINE|Alu	8347	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
54917	chr12	96143371	96143730	+	0	NA	Intergenic	Intergenic	-50825	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
91455	chr17	4808551	4809150	+	0	NA	intron (NM_002663, intron 4 of 24)	AluJo|SINE|Alu	1698	NM_002663	5338		NM_002663	ENSG00000129219	PLD2	PLD1C	phospholipase D2	protein-coding
121005	chr19	45777671	45778230	+	0	NA	intron (NM_001081560, intron 6 of 14)	intron (NM_001081560, intron 6 of 14)	1669	NM_001288765	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
73054	chr15	40897071	40897230	+	0	NA	intron (NM_020857, intron 2 of 4)	AluSq2|SINE|Alu	2700	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
5449	chr1	25612271	25612430	+	0	NA	Intergenic	L2b|LINE|L2	-4441	NM_020379	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
124685	chr2	3489121	3489200	+	0	NA	Intergenic	Intergenic	28587	NM_001306077	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
230032	chr9	127244671	127245780	+	0	NA	Intergenic	CpG	-18437	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
81284	chr16	4664801	4666100	+	0	NA	intron (NM_001142291, intron 7 of 15)	AluSz|SINE|Alu	-5868	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
19947	chr1	184838501	184839280	+	0	NA	intron (NM_052966, intron 5 of 13)	X6A_LINE|LINE|CR1	-84032	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
213206	chr7	132771221	132771880	+	0	NA	Intergenic	Intergenic	12580	NR_134332	100506937		NR_134332	ENSG00000225881	LOC100506937	-	uncharacterized LOC100506937	ncRNA
99721	chr17	50903251	50903350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-35322	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
179322	chr4	181143351	181143530	+	0	NA	intron (NR_033918, intron 2 of 2)	intron (NR_033918, intron 2 of 2)	15709	NR_033918	728081		NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
166072	chr3	108840571	108840930	+	0	NA	intron (NM_001317747, intron 2 of 4)	MER70B|LTR|ERVL	17964	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
130751	chr2	86809401	86810150	+	0	NA	Intergenic	CpG	-1379	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
20046	chr1	185438971	185439130	+	0	NA	Intergenic	L2|LINE|L2	-104011	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
127499	chr2	42277421	42277700	+	0	NA	intron (NM_019063, intron 6 of 22)	intron (NM_019063, intron 6 of 22)	82478	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
21748	chr1	206878651	206878750	+	0	NA	Intergenic	LTR8|LTR|ERV1	13077	NM_001385165	50604		NM_018724	ENSG00000162891	IL20	IL-20|IL10D|ZCYTO10	interleukin 20	protein-coding
57092	chr12	121032651	121032950	+	0	NA	intron (NM_198213, intron 2 of 4)	intron (NM_198213, intron 2 of 4)	6442	NM_003733	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
217728	chr8	30650071	30650430	+	0	NA	intron (NM_001348353, intron 2 of 6)	L1MB8|LINE|L1	7368	NM_001348353	2961		NM_002095	ENSG00000197265	GTF2E2	FE|TF2E2|TFIIE-B|TTD6	general transcription factor IIE subunit 2	protein-coding
100278	chr17	59641671	59643080	+	0	NA	intron (NM_004859, intron 1 of 31)	intron (NM_004859, intron 1 of 31)	22480	NM_004859	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
94942	chr17	32066801	32067850	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	26989	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
13573	chr1	116127371	116127930	+	0	NA	intron (NM_152367, intron 5 of 6)	intron (NM_152367, intron 5 of 6)	15895	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
236692	chrX	77769901	77770100	+	0	NA	intron (NM_138270, intron 1 of 33)	AluJb|SINE|Alu	16216	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
171039	chr3	195186301	195186800	+	0	NA	intron (NM_001308069, intron 2 of 3)	L2b|LINE|L2	38679	NR_102711	101410543		NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
207253	chr7	43866801	43867000	+	0	NA	exon (NM_032014, exon 4 of 4)	exon (NM_032014, exon 4 of 4)	2617	NM_032014	64951		NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
91306	chr17	4266321	4266580	+	0	NA	Intergenic	L2b|LINE|L2	-2471	NR_047571	51479		NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
190163	chr5	178133421	178133800	+	0	NA	intron (NM_022762, intron 2 of 10)	AluSq2|SINE|Alu	2596	NM_022762	64777		NM_022762	ENSG00000145916	RMND5B	GID2|GID2B	required for meiotic nuclear division 5 homolog B	protein-coding
54725	chr12	93573151	93574000	+	0	NA	intron (NM_001270467, intron 2 of 2)	CpG	900	NM_001270471	8835		NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
89649	chr16	89347051	89347350	+	0	NA	intron (NR_045839, intron 2 of 9)	MLT2C1|LTR|ERVL	26748	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
47424	chr12	3095651	3095750	+	0	NA	intron (NM_006675, intron 2 of 8)	SVA_F|Retroposon|SVA	18321	NM_006675	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
56448	chr12	113961871	113962030	+	0	NA	intron (NM_016196, intron 2 of 23)	MER5A|DNA|hAT-Charlie	4375	NM_001146698	9904		NM_016196	ENSG00000122965	RBM19	Mrd1	RNA binding motif protein 19	protein-coding
162500	chr3	48573701	48574480	+	0	NA	intron (NM_000094, intron 80 of 118)	(CACAGA)n|Simple_repeat|Simple_repeat	4887	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
154643	chr22	36330501	36330900	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-43793	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
129697	chr2	70643771	70644030	+	0	NA	Intergenic	Intergenic	-90074	NM_003236	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
9980	chr1	54980521	54980780	+	0	NA	promoter-TSS (NM_182532)	promoter-TSS (NM_182532)	22	NM_182532	199964		NM_182532	ENSG00000143001	TMEM61	-	transmembrane protein 61	protein-coding
21971	chr1	208988721	208989230	+	0	NA	Intergenic	Intergenic	16521	NR_146915	105372894		NR_146915	ENSG00000236950	LINC01774	-	long intergenic non-protein coding RNA 1774	ncRNA
25979	chr10	11793271	11793430	+	0	NA	Intergenic	LTR13|LTR|ERVK	-30006	NM_153256	254427		NM_153256	ENSG00000148426	PROSER2	C10orf47	proline and serine rich 2	protein-coding
141327	chr2	240559151	240559250	+	0	NA	promoter-TSS (NM_001033575)	promoter-TSS (NM_001033575)	-854	NM_001033575	285193		NM_001033575	ENSG00000188542	DUSP28	DUSP26|VHP	dual specificity phosphatase 28	protein-coding
24946	chr10	1368901	1369180	+	0	NA	intron (NM_018702, intron 2 of 9)	intron (NM_018702, intron 2 of 9)	-157590	NR_033387	642394		NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168	ADARB2 antisense RNA 1	ncRNA
55687	chr12	107515501	107515730	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	-65259	NM_001017523	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
90042	chr16	89912601	89913430	+	0	NA	Intergenic	Intergenic	-5847	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
194902	chr6	34696251	34698150	+	0	NA	promoter-TSS (NM_024294)	promoter-TSS (NM_024294)	255	NR_134626	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
76560	chr15	75215001	75215200	+	0	NA	Intergenic	Intergenic	13218	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
68859	chr14	91302001	91302630	+	0	NA	intron (NM_001080414, intron 20 of 29)	intron (NM_001080414, intron 20 of 29)	-48435	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
149278	chr21	26844301	26844780	+	0	NA	exon (NM_006988, exon 1 of 9)	exon (NM_006988, exon 1 of 9)	869	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
125842	chr2	24409921	24410270	+	0	NA	Intergenic	Intergenic	-49559	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
21302	chr1	204492171	204492800	+	0	NA	intron (NM_001377335, intron 1 of 35)	intron (NM_001377335, intron 1 of 35)	2320	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
137702	chr2	197496471	197496780	+	0	NA	intron (NM_199440, intron 3 of 11)	intron (NM_199440, intron 3 of 11)	3215	NM_002156	3329		NM_002156	ENSG00000144381	HSPD1	CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13	heat shock protein family D (Hsp60) member 1	protein-coding
181771	chr5	50741871	50742030	+	0	NA	intron (NM_024615, intron 2 of 25)	AluSq2|SINE|Alu	74536	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
37446	chr11	18009851	18010680	+	0	NA	intron (NR_104041, intron 1 of 9)	intron (NR_104041, intron 1 of 9)	2782	NR_104041	26297		NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
141243	chr2	239706951	239707050	+	0	NA	Intergenic	(TGCCCTGCCC)n|Simple_repeat|Simple_repeat	-55860	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
36243	chr11	3755801	3756200	+	0	NA	intron (NM_001365128, intron 10 of 32)	intron (NM_001365128, intron 10 of 32)	41546	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
156446	chr22	41242451	41242930	+	0	NA	Intergenic	L1ME3|LINE|L1	-1759	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
103807	chr17	79086021	79086500	+	0	NA	exon (NM_001042573, exon 14 of 14)	exon (NM_001042573, exon 14 of 14)	11436	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
233809	chrX	1466251	1466580	+	0	NA	exon (NM_178129, exon 2 of 2)	exon (NM_178129, exon 2 of 2)	-12653	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
219625	chr8	80126921	80127380	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	43971	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
90554	chr17	1503621	1504500	+	0	NA	intron (NM_016532, intron 7 of 11)	intron (NM_016532, intron 7 of 11)	-11374	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
148942	chr21	10123571	10123730	+	0	NA	Intergenic	GSATII|Satellite|centr	-289847	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
194652	chr6	33616851	33617730	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-4032	NM_002224	3710		NM_002224	ENSG00000096433	ITPR3	CMT1J|IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding
154744	chr22	36479921	36480180	+	0	NA	intron (NM_012473, intron 2 of 3)	AluSq2|SINE|Alu	1590	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
238441	chrX	151393301	151393900	+	0	NA	Intergenic	Intergenic	-2995	NM_001363810	203547		NM_001017980	ENSG00000160131	VMA21	MEAX|XMEA	vacuolar ATPase assembly factor VMA21	protein-coding
76595	chr15	75357271	75357630	+	0	NA	TTS (NM_001352520)	TTS (NM_001352520)	-3765	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
177585	chr4	120066151	120068330	+	0	NA	promoter-TSS (NM_002358)	promoter-TSS (NM_002358)	-392	NM_002358	4085		NM_002358	ENSG00000164109	MAD2L1	HSMAD2|MAD2	mitotic arrest deficient 2 like 1	protein-coding
39314	chr11	58923221	58923480	+	0	NA	intron (NM_001354699, intron 2 of 7)	intron (NM_001354699, intron 2 of 7)	-4279	NM_001220494	92292		NM_080661	ENSG00000166840	GLYATL1	GATF-C|GNAT	glycine-N-acyltransferase like 1	protein-coding
132935	chr2	111443751	111444250	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	51161	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
101966	chr17	74732251	74732820	+	0	NA	intron (NM_175738, intron 2 of 8)	(GT)n|Simple_repeat|Simple_repeat	-4025	NM_001330471	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
211553	chr7	105530851	105530950	+	0	NA	Intergenic	AluSp|SINE|Alu	-1181	NR_144478	60561		NM_021930	ENSG00000135249	RINT1	ILFS3|RINT-1	RAD50 interactor 1	protein-coding
18873	chr1	168056321	168056480	+	0	NA	intron (NM_001198956, intron 17 of 21)	CpG	57740	NR_031702	100313835		NR_031702	ENSG00000221545	MIR1255B2	MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2	microRNA 1255b-2	ncRNA
157324	chr22	44621971	44622800	+	0	NA	non-coding (NR_044991, exon 3 of 5)	non-coding (NR_044991, exon 3 of 5)	3034	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
160014	chr3	18396871	18397430	+	0	NA	intron (NM_001322873, intron 6 of 10)	intron (NM_001322873, intron 6 of 10)	28189	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
103301	chr17	77871951	77872800	+	0	NA	Intergenic	Intergenic	11712	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
49184	chr12	15522601	15522850	+	0	NA	intron (NM_030667, intron 10 of 26)	intron (NM_030667, intron 10 of 26)	-23886	NM_030671	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
132502	chr2	106060251	106060580	+	0	NA	Intergenic	Intergenic	-5273	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
205671	chr7	23011101	23011950	+	0	NA	intron (NM_001363466, intron 1 of 11)	intron (NM_001363466, intron 1 of 11)	2605	NM_032581	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
128664	chr2	61454221	61454930	+	0	NA	intron (NM_014709, intron 1 of 79)	AluSx1|SINE|Alu	16512	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
231782	chr9	132290421	132290680	+	0	NA	intron (NM_001351527, intron 15 of 25)	AluSg|SINE|Alu	64306	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
103034	chr17	77097801	77098000	+	0	NA	intron (NM_001204410, intron 3 of 18)	L2a|LINE|L2	8483	NR_106997	102466864		NR_106997	ENSG00000284250	MIR6516	hsa-mir-6516	microRNA 6516	ncRNA
141821	chr20	362451	363080	+	0	NA	Intergenic	Intergenic	14860	NM_001323685	80023		NM_024958	ENSG00000125841	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
110150	chr19	1619051	1619150	+	0	NA	intron (NM_003200, intron 16 of 18)	intron (NM_003200, intron 16 of 18)	-13638	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
34358	chr10	132222821	132223880	+	0	NA	intron (NM_173575, intron 8 of 11)	intron (NM_173575, intron 8 of 11)	25758	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
7750	chr1	36163551	36163650	+	0	NA	intron (NM_001286365, intron 1 of 15)	intron (NM_001286365, intron 1 of 15)	7440	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
210656	chr7	100485551	100485650	+	0	NA	intron (NM_173564, intron 2 of 6)	intron (NM_173564, intron 2 of 6)	1673	NM_173564	222950		NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
183460	chr5	79240271	79240880	+	0	NA	intron (NM_152405, intron 1 of 10)	AluSx|SINE|Alu	4444	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
183791	chr5	82139201	82139400	+	0	NA	intron (NM_031482, intron 3 of 7)	SVA_F|Retroposon|SVA	139054	NM_001025	6228		NM_001025	ENSG00000186468	RPS23	BTDD|MABAS|MCINS|PAMAS|S23|uS12	ribosomal protein S23	protein-coding
166196	chr3	111831771	111832250	+	0	NA	intron (NM_001134437, intron 1 of 17)	intron (NM_001134437, intron 1 of 17)	-27170	NM_145753	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
8436	chr1	40648971	40649330	+	0	NA	intron (NM_014747, intron 1 of 7)	intron (NM_014747, intron 1 of 7)	16532	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
99130	chr17	49234971	49235130	+	0	NA	Intergenic	Intergenic	-4263	NM_178500	162466		NM_178500	ENSG00000173868	PHOSPHO1	-	phosphoethanolamine/phosphocholine phosphatase 1	protein-coding
48969	chr12	12983401	12983700	+	0	NA	non-coding (NR_038920, exon 3 of 3)	non-coding (NR_038920, exon 3 of 3)	3713	NR_038920	100506314		NR_038920	ENSG00000247498	GPRC5D-AS1	-	GPRC5D and HEBP1 antisense RNA 1	ncRNA
151820	chr22	18390301	18390600	+	0	NA	Intergenic	Intergenic	-3894	NR_165634	729461		NM_201401	ENSG00000274044	FAM230J	LINC01660	family with sequence similarity 230 member J	ncRNA
220187	chr8	95228351	95228650	+	0	NA	Intergenic	Intergenic	-12126	NR_046232	619344		NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
172785	chr4	2943401	2943600	+	0	NA	intron (NM_001291978, intron 13 of 17)	intron (NM_001291978, intron 13 of 17)	7954	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
118961	chr19	38846901	38847130	+	0	NA	intron (NM_001533, intron 2 of 12)	AluJb|SINE|Alu	2971	NM_001533	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
226368	chr9	70234371	70234530	+	0	NA	intron (NR_039990, intron 2 of 3)	L1PA7|LINE|L1	24424	NR_039990	100507299		NR_039990		SMC5-DT	MAMDC2-AS2|SMC5-AS1	SMC5 divergent transcript	ncRNA
210906	chr7	101186751	101187250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6707	NM_198571	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
22724	chr1	224192401	224192880	+	0	NA	3' UTR (NM_001321542, exon 3 of 3)	3' UTR (NM_001321542, exon 3 of 3)	8960	NM_001321542	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
9019	chr1	44732451	44732550	+	0	NA	Intergenic	AluY|SINE|Alu	-1332	NR_002755	26830		NR_002755	ENSG00000200169	RNU5D-1	RNU5D|U5DL|U5DS	RNA, U5D small nuclear 1	snRNA
238712	chrX	154096621	154098680	+	0	NA	promoter-TSS (NM_001316337)	promoter-TSS (NM_001316337)	67	NM_001110792	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
194535	chr6	33310171	33310700	+	0	NA	intron (NM_172209, intron 2 of 6).2	AluSx1|SINE|Alu	3643	NM_003190	6892		NM_003190	ENSG00000231925	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein	protein-coding
37628	chr11	20367421	20367880	+	0	NA	TTS (NM_001098523)	TTS (NM_001098523)	3509	NM_001098523	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
122681	chr19	49884921	49885180	+	0	NA	intron (NM_024682, intron 13 of 16)	intron (NM_024682, intron 13 of 16)	-3125	NR_039905	100616314		NR_039905	ENSG00000284394	MIR4750	mir-4750	microRNA 4750	ncRNA
108682	chr18	76983101	76983900	+	0	NA	intron (NM_001025081, intron 6 of 6)	intron (NM_001025081, intron 6 of 6)	33555	NM_001025090	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
11140	chr1	86738171	86738400	+	0	NA	intron (NM_001206652, intron 9 of 10)	AluY|SINE|Alu	33709	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
63559	chr14	20347371	20347930	+	0	NA	intron (NM_001042618, intron 4 of 15)	AluSx|SINE|Alu	4015	NM_001042618	10038		NM_005484	ENSG00000129484	PARP2	ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2	poly(ADP-ribose) polymerase 2	protein-coding
56626	chr12	118312601	118312800	+	0	NA	intron (NM_001346487, intron 1 of 20)	intron (NM_001346487, intron 1 of 20)	47005	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
128763	chr2	62206101	62206850	+	0	NA	TTS (NR_049824)	TTS (NR_049824)	649	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
212528	chr7	128837571	128838230	+	0	NA	intron (NM_001458, intron 5 of 47)	intron (NM_001458, intron 5 of 47)	7494	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
197609	chr6	81821071	81821230	+	0	NA	Intergenic	Intergenic	-6958	NR_126363	101928770		NR_126363	ENSG00000224995	LINC01526	Lnc-FAM46A-1	long intergenic non-protein coding RNA 1526	ncRNA
178803	chr4	153501121	153502100	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	35250	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
17598	chr1	156888251	156888550	+	0	NA	Intergenic	Intergenic	-5318	NM_001353682	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
82695	chr16	20738801	20739080	+	0	NA	exon (NM_017736, exon 2 of 4)	exon (NM_017736, exon 2 of 4)	2878	NM_017736	55623		NM_017736	ENSG00000066654	THUMPD1	NEDSOA|Tan1	THUMP domain containing 1	protein-coding
16454	chr1	154584671	154585430	+	0	NA	intron (NM_001111, intron 14 of 14)	intron (NM_001111, intron 14 of 14)	17272	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
175888	chr4	80069821	80070680	+	0	NA	intron (NM_001145794, intron 2 of 15)	intron (NM_001145794, intron 2 of 15)	2979	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
112984	chr19	7873171	7873330	+	0	NA	exon (NM_001190467, exon 3 of 6)	exon (NM_001190467, exon 3 of 6)	1140	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
214348	chr7	149494221	149495100	+	0	NA	intron (NM_152557, intron 1 of 6)	intron (NM_152557, intron 1 of 6)	3147	NM_001163474	155061		NM_152557	ENSG00000181220	ZNF746	PARIS	zinc finger protein 746	protein-coding
173128	chr4	6612851	6613230	+	0	NA	intron (NM_015274, intron 15 of 18)	MLT1K|LTR|ERVL-MaLR	-27051	NM_033296	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
118855	chr19	38646101	38646300	+	0	NA	Intergenic	L2a|LINE|L2	-1449	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
199407	chr6	116564851	116565480	+	0	NA	Intergenic	LTR2752|LTR|ERV1	-6339	NM_001007464	51389		NM_015952	ENSG00000111832	RWDD1	CGI-24|PTD013	RWD domain containing 1	protein-coding
167700	chr3	130747601	130748680	+	0	NA	Intergenic	AluSz|SINE|Alu	-1311	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
101612	chr17	68190151	68190480	+	0	NA	Intergenic	Intergenic	-8345	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
62035	chr13	88622301	88622830	+	0	NA	Intergenic	LTR77|LTR|ERV1	-4288	NR_047490	100861553		NR_047490	ENSG00000261666	LINC00560	-	long intergenic non-protein coding RNA 560	ncRNA
134759	chr2	145752471	145752700	+	0	NA	Intergenic	Intergenic	-834472	NR_026904	728773		NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
204757	chr7	5595321	5595580	+	0	NA	intron (NM_003088, intron 1 of 4)	intron (NM_003088, intron 1 of 4)	2634	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
16232	chr1	153942551	153942980	+	0	NA	intron (NM_014856, intron 3 of 27)	intron (NM_014856, intron 3 of 27)	2491	NM_001367466	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
133239	chr2	113235151	113236500	+	0	NA	promoter-TSS (NR_015377)	promoter-TSS (NR_015377)	298	NR_047570	654433		NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
197959	chr6	89956701	89956900	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	62331	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
203237	chr6	168905701	168906630	+	0	NA	Intergenic	Intergenic	58217	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
61003	chr13	48037251	48039980	+	0	NA	intron (NR_136687, intron 1 of 4)	MIR|SINE|MIR	889	NM_018283	55270		NM_018283	ENSG00000136159	NUDT15	MTH2|NUDT15D	nudix hydrolase 15	protein-coding
5714	chr1	26391051	26392350	+	0	NA	Intergenic	Intergenic	-18906	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
71207	chr14	105076571	105077780	+	0	NA	Intergenic	Intergenic	-11745	NM_013345	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
82660	chr16	19522951	19523050	+	0	NA	promoter-TSS (NM_014711)	promoter-TSS (NM_014711)	-902	NM_001324066	51573		NM_016641	ENSG00000006007	GDE1	363E6.2|MIR16	glycerophosphodiester phosphodiesterase 1	protein-coding
746	chr1	1491171	1491330	+	0	NA	intron (NM_031921, intron 15 of 15)	intron (NM_031921, intron 15 of 15)	13401	NM_001317238	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
198066	chr6	90229521	90229980	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	67093	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
76829	chr15	77186501	77186980	+	0	NA	intron (NM_001385027, intron 5 of 6)	intron (NM_001385027, intron 5 of 6)	38664	NR_026813	81698		NM_030944		LINC00597	C15orf5	long intergenic non-protein coding RNA 597	ncRNA
61669	chr13	73970071	73970230	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	163779	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
80596	chr16	2914201	2914400	+	0	NA	intron (NM_032296, intron 2 of 9)	intron (NM_032296, intron 2 of 9)	2321	NM_020912	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
65661	chr14	52466171	52466550	+	0	NA	intron (NM_020784, intron 16 of 20)	AluSc8|SINE|Alu	86145	NM_020784	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
170617	chr3	187005801	187006300	+	0	NA	intron (NM_173216, intron 2 of 7)	L2c|LINE|L2	-15805	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
46704	chr11	128828621	128829280	+	0	NA	Intergenic	L2a|LINE|L2	13519	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
77583	chr15	85047251	85047550	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	65426	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
227085	chr9	85698421	85698750	+	0	NA	intron (NM_001286717, intron 1 of 24)	intron (NM_001286717, intron 1 of 24)	43369	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
156479	chr22	41267771	41268530	+	0	NA	exon (NM_001317930, exon 4 of 16)	exon (NM_001317930, exon 4 of 16)	-15100	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
83227	chr16	23837901	23839100	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	2517	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
235175	chrX	41261851	41261950	+	0	NA	Intergenic	MER65C|LTR|ERV1	-13839	NR_135616	105373185		NR_135616	ENSG00000223714	LINC02601	-	long intergenic non-protein coding RNA 2601	ncRNA
113497	chr19	10089421	10090050	+	0	NA	intron (NM_018381, intron 4 of 7)	intron (NM_018381, intron 4 of 7)	3418	NM_001308277	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
153417	chr22	24955371	24955530	+	0	NA	Intergenic	Intergenic	-8755	NM_001001663	255349		NM_001001663	ENSG00000206069	LHFPL7	TMEM211|bA9F11.1	LHFPL tetraspan subfamily member 7	protein-coding
87209	chr16	69445901	69446100	+	0	NA	intron (NM_030579, intron 1 of 4)	intron (NM_030579, intron 1 of 4)	21381	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
190310	chr5	179605001	179605880	+	0	NA	intron (NM_001040452, intron 15 of 17).2	intron (NM_001040452, intron 15 of 17).2	-1699	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
22212	chr1	212478651	212478950	+	0	NA	Intergenic	AluJb|SINE|Alu	45880	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
198098	chr6	90288201	90288730	+	0	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	8378	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
10387	chr1	65008771	65009480	+	0	NA	intron (NM_001321853, intron 2 of 26)	L1ME3G|LINE|L1	-6649	NR_119383	101927084		NR_119383	ENSG00000226891	LINC01359	-	long intergenic non-protein coding RNA 1359	ncRNA
221539	chr8	124716871	124717430	+	0	NA	intron (NM_001363300, intron 1 of 12)	L2a|LINE|L2	11323	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
103978	chr17	79999971	80000130	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	35822	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
136070	chr2	173027421	173027750	+	0	NA	intron (NR_164740, intron 24 of 30)	intron (NR_164740, intron 24 of 30)	-48261	NM_133646	51776		NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
57322	chr12	121681771	121682930	+	0	NA	Intergenic	Intergenic	-9706	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
23681	chr1	231411951	231412250	+	0	NA	intron (NM_001377261, intron 1 of 3)	intron (NM_001377261, intron 1 of 3)	10187	NM_001377261	54583		NM_022051	ENSG00000135766	EGLN1	C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia inducible factor 1	protein-coding
164889	chr3	71095971	71096330	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-31226	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
34196	chr10	129031501	129032450	+	0	NA	Intergenic	Intergenic	119142	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
78842	chr15	99924401	99924830	+	0	NA	Intergenic	AluY|SINE|Alu	117592	NR_135737	400464		NM_001013670		LOC400464	-	ubiquitin conjugating enzyme E2 Q2 pseudogene	pseudo
203010	chr6	163417671	163417830	+	0	NA	intron (NM_206854, intron 1 of 6)	intron (NM_206854, intron 1 of 6)	3032	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
197731	chr6	87146251	87146550	+	0	NA	Intergenic	Intergenic	-9165	NM_015021	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
153591	chr22	26836051	26836230	+	0	NA	Intergenic	MIRb|SINE|MIR	-24071	NR_146604	110091768		NR_146604		LOC110091768	-	uncharacterized LOC110091768	ncRNA
236918	chrX	89204851	89204950	+	0	NA	Intergenic	Intergenic	457675	NM_001184771	53336		NM_033048	ENSG00000147183	CPXCR1	CT77	CPX chromosome region candidate 1	protein-coding
113511	chr19	10107471	10107630	+	0	NA	promoter-TSS (NR_004381)	promoter-TSS (NR_004381)	-101	NR_004381	692229		NR_004381	ENSG00000209645	SNORD105	U105	small nucleolar RNA, C/D box 105	snoRNA
134931	chr2	151408351	151408730	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1362	NM_001177664	55183		NM_018151	ENSG00000080345	RIF1	-	replication timing regulatory factor 1	protein-coding
176290	chr4	87222051	87222350	+	0	NA	Intergenic	LTR48B|LTR|ERV1	-1582	NM_001292006	57563		NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
209720	chr7	86993201	86993550	+	0	NA	intron (NM_001142749, intron 1 of 21)	L2c|LINE|L2	-27476	NM_152748	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
113836	chr19	10624271	10625980	+	0	NA	promoter-TSS (NM_020428)	promoter-TSS (NM_020428)	-428	NM_001363611	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
206523	chr7	34900951	34901050	+	0	NA	Intergenic	Intergenic	39834	NR_031666	100302152		NR_031666	ENSG00000221669	MIR548N	MIRN548N|hsa-mir-548n	microRNA 548n	ncRNA
72119	chr15	28953971	28954130	+	0	NA	intron (NM_001353793, intron 1 of 12).2	L2|LINE|L2	20046	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
205358	chr7	13779151	13779250	+	0	NA	Intergenic	LTR16A|LTR|ERVL	207314	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
52789	chr12	56711271	56711430	+	0	NA	Intergenic	Intergenic	13949	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
170789	chr3	189022701	189022900	+	0	NA	Intergenic	L1PA3|LINE|L1	-75161	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
31882	chr10	100265051	100266000	+	0	NA	intron (NM_001303407, intron 1 of 12)	AluSx1|SINE|Alu	2113	NM_018294	55280		NM_018294	ENSG00000095485	CWF19L1	C19L1|SCAR17|hDrn1	CWF19 like cell cycle control factor 1	protein-coding
15853	chr1	151405051	151405150	+	0	NA	exon (NM_145796, exon 17 of 17)	exon (NM_145796, exon 17 of 17)	5527	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
166168	chr3	111621671	111621930	+	0	NA	intron (NR_134917, intron 8 of 14)	intron (NR_134917, intron 8 of 14)	-26454	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
43920	chr11	90220101	90221300	+	0	NA	intron (NM_001144073, intron 1 of 9)	intron (NM_001144073, intron 1 of 9)	2349	NM_012124	26973		NM_012124	ENSG00000110172	CHORDC1	CHP1	cysteine and histidine rich domain containing 1	protein-coding
215747	chr8	1892401	1892700	+	0	NA	intron (NM_001308152, intron 10 of 27)	intron (NM_001308152, intron 10 of 27)	68624	NM_001308153	9639		NM_014629	ENSG00000104728	ARHGEF10	GEF10|SNCV	Rho guanine nucleotide exchange factor 10	protein-coding
54652	chr12	93098101	93098530	+	0	NA	intron (NR_040096, intron 3 of 4)	intron (NR_040096, intron 3 of 4)	-76051	NR_120492	102724933		NR_120492		LINC02412	-	long intergenic non-protein coding RNA 2412	ncRNA
223425	chr8	143949951	143950050	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	926	NM_201380	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
186832	chr5	139407451	139407750	+	0	NA	Intergenic	Intergenic	-3511	NM_194296	202051		NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
143590	chr20	31686301	31686500	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-35107	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
85442	chr16	50547151	50547900	+	0	NA	promoter-TSS (NM_033119)	promoter-TSS (NM_033119)	-871	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
6108	chr1	27333971	27334830	+	0	NA	intron (NR_037576, intron 6 of 6)	intron (NR_037576, intron 6 of 6)	-7622	NM_032872	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
160387	chr3	27967171	27967330	+	0	NA	Intergenic	Intergenic	-133114	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
807	chr1	1554601	1555150	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	-14251	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
226396	chr9	70405871	70406800	+	0	NA	intron (NM_001206, intron 1 of 1)	MIRb|SINE|MIR	8322	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
92216	chr17	7863771	7863930	+	0	NA	intron (NM_001330111, intron 3 of 4)	intron (NM_001330111, intron 3 of 4)	5847	NM_001330110	124637		NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
119958	chr19	41882451	41883500	+	0	NA	promoter-TSS (NM_198977)	promoter-TSS (NM_198977)	-209	NM_198977	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
177904	chr4	129091551	129092150	+	0	NA	intron (NM_001300898, intron 1 of 5)	MIR|SINE|MIR	1689	NM_144643	132320		NM_144643	ENSG00000151466	SCLT1	CAP-1A|CAP1A	sodium channel and clathrin linker 1	protein-coding
11985	chr1	94755771	94755930	+	0	NA	intron (NR_160781, intron 1 of 4)	intron (NR_160781, intron 1 of 4)	-9950	NR_039620	100616321		NR_039620	ENSG00000263526	MIR378G	-	microRNA 378g	ncRNA
57174	chr12	121425971	121426130	+	0	NA	Intergenic	Intergenic	18302	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
33879	chr10	124436151	124436480	+	0	NA	Intergenic	L1MB5|LINE|L1	13720	NM_001146340	390010		NM_001146340	ENSG00000229544	NKX1-2	C10orf121|NKX-1.1|bB238F13.2	NK1 homeobox 2	protein-coding
187638	chr5	143006121	143006380	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-137340	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
216695	chr8	22167351	22167900	+	0	NA	intron (NR_033404, intron 1 of 15)	intron (NR_033404, intron 1 of 15)	2253	NR_033403	649		NM_001199	ENSG00000168487	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
231734	chr9	131853421	131853680	+	0	NA	Intergenic	L1MD2|LINE|L1	-113474	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
103082	chr17	77323451	77324250	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	4335	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
108733	chr18	77095001	77095650	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	37458	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
77685	chr15	85625521	85626400	+	0	NA	intron (NM_001270546, intron 1 of 28)	intron (NM_001270546, intron 1 of 28)	6010	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
62708	chr13	102870301	102870980	+	0	NA	intron (NM_001204425, intron 20 of 22)	intron (NM_001204425, intron 20 of 22)	-9459	NR_026965	121952		NR_026965	ENSG00000250878	METTL21EP	METTL21CP1	methyltransferase like 21E, pseudogene	pseudo
119608	chr19	40762571	40763450	+	0	NA	exon (NM_004596, exon 4 of 6)	exon (NM_004596, exon 4 of 6)	11807	NM_004596	6626		NM_004596	ENSG00000077312	SNRPA	Mud1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding
63517	chr13	114295071	114295430	+	0	NA	intron (NR_148485, intron 5 of 6)	intron (NR_148485, intron 5 of 6)	12855	NM_001353648	65110		NM_023011	ENSG00000169062	UPF3A	HUPF3A|RENT3A|UPF3	UPF3A regulator of nonsense mediated mRNA decay	protein-coding
177654	chr4	121252001	121252700	+	0	NA	Intergenic	Intergenic	-24867	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
223267	chr8	143718051	143718350	+	0	NA	intron (NM_139021, intron 3 of 13)	intron (NM_139021, intron 3 of 13)	1851	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
222359	chr8	133566151	133566450	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	5587	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
193666	chr6	30943251	30943430	+	0	NA	intron (NM_080870, intron 1 of 2)	intron (NM_080870, intron 1 of 2)	2367	NM_080870	135656		NM_080870	ENSG00000168631	MUCL3	C6orf37|DPCR1|PBLT	mucin like 3	protein-coding
191857	chr6	15258551	15259800	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	10320	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
25672	chr10	8402271	8403180	+	0	NA	Intergenic	Intergenic	-134420	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
212039	chr7	114941451	114941750	+	0	NA	intron (NM_199072, intron 2 of 4)	L2c|LINE|L2	19446	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
160155	chr3	20160171	20160530	+	0	NA	TTS (NM_001012412)	TTS (NM_001012412)	-13936	NR_132785	100874028		NR_046723	ENSG00000231304	SGO1-AS1	SGOL1-AS1	SGO1 antisense RNA 1	ncRNA
70621	chr14	102806701	102806980	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	29361	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
168850	chr3	152275051	152275800	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-5799	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
44512	chr11	107549151	107549500	+	0	NA	intron (NR_165426, intron 6 of 10)	MIRb|SINE|MIR	16410	NM_138775	91801		NM_138775	ENSG00000137760	ALKBH8	ABH8|MRT71|TRM9|TRMT9|TRMT9A	alkB homolog 8, tRNA methyltransferase	protein-coding
166576	chr3	117997551	117997650	+	0	NA	Intergenic	CpG	-306675	NR_146652	105374057		NR_146652	ENSG00000241213	LINC02024	-	long intergenic non-protein coding RNA 2024	ncRNA
133987	chr2	130826701	130827430	+	0	NA	Intergenic	Intergenic	-9849	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
89942	chr16	89740651	89740750	+	0	NA	TTS (NR_110128)	TTS (NR_110128)	19163	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
123064	chr19	51364021	51364630	+	0	NA	intron (NM_001985, intron 1 of 5)	intron (NM_001985, intron 1 of 5)	2063	NM_001985	2109		NM_001985	ENSG00000105379	ETFB	FP585|MADD	electron transfer flavoprotein subunit beta	protein-coding
108634	chr18	76465051	76465150	+	0	NA	intron (NM_014643, intron 1 of 6)	intron (NM_014643, intron 1 of 6)	-26552	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
230811	chr9	129027671	129030500	+	0	NA	promoter-TSS (NM_001287046)	promoter-TSS (NM_001287046)	-732	NM_001287046	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
107422	chr18	46193151	46193930	+	0	NA	intron (NM_145055, intron 1 of 4)	AluSq2|SINE|Alu	19506	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
203989	chr7	1742931	1743850	+	0	NA	intron (NM_001128636, intron 2 of 2)	intron (NM_001128636, intron 2 of 2)	-1080	NR_120510	101927125		NR_120508	ENSG00000236081	ELFN1-AS1	MYCLo-2	ELFN1 antisense RNA 1	ncRNA
2691	chr1	10632821	10633100	+	0	NA	Intergenic	Intergenic	158010	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
231633	chr9	131591171	131592200	+	0	NA	intron (NM_001377935, intron 18 of 26)	intron (NM_001377935, intron 18 of 26)	46162	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
117705	chr19	28727451	28727750	+	0	NA	promoter-TSS (NR_110759)	promoter-TSS (NR_110759)	94	NR_110759	100420587		NR_110759	ENSG00000283403	LOC100420587	-	SHC binding and spindle associated 1 pseudogene	pseudo
26497	chr10	18140321	18140780	+	0	NA	5' UTR (NM_001167945, exon 1 of 14)	5' UTR (NM_001167945, exon 1 of 14)	126	NM_201571	783		NM_000724	ENSG00000165995	CACNB2	CAB2|CACNLB2|CAVB2|MYSB	calcium voltage-gated channel auxiliary subunit beta 2	protein-coding
230536	chr9	128369771	128370030	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluSg|SINE|Alu	-1419	NM_001135947	81605		NM_030914	ENSG00000167118	URM1	C9orf74	ubiquitin related modifier 1	protein-coding
126627	chr2	28806851	28806950	+	0	NA	Intergenic	AluSx|SINE|Alu	-3934	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
8823	chr1	42957401	42958300	+	0	NA	intron (NM_006516, intron 1 of 9)	CpG	1018	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
93070	chr17	17506401	17506600	+	0	NA	intron (NM_148172, intron 5 of 6)	intron (NM_148172, intron 5 of 6)	-10105	NM_001199989	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
195141	chr6	35690571	35690730	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	-1708	NM_001145777	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
94649	chr17	30147651	30148030	+	0	NA	intron (NM_032141, intron 2 of 6)	AluSq2|SINE|Alu	-30680	NR_036149	100423003		NR_036149	ENSG00000284399	MIR3184	-	microRNA 3184	ncRNA
95676	chr17	38346951	38347050	+	0	NA	Intergenic	AluY|SINE|Alu	-3044	NM_001004334	440435		NM_001004334	ENSG00000277399	GPR179	CSNB1E|GPR158L|GPR158L1	G protein-coupled receptor 179	protein-coding
206338	chr7	30321471	30321970	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-31830	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
51797	chr12	53381801	53383150	+	0	NA	exon (NM_003109, exon 3 of 6)	exon (NM_003109, exon 3 of 6)	1831	NM_003109	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
112932	chr19	7682951	7683050	+	0	NA	3' UTR (NM_001042462, exon 2 of 2)	3' UTR (NM_001042462, exon 2 of 2)	2167	NM_001042462	126003		NM_174894	ENSG00000181029	TRAPPC5	TRS31	trafficking protein particle complex subunit 5	protein-coding
189735	chr5	176550301	176551180	+	0	NA	intron (NM_017675, intron 1 of 31)	intron (NM_017675, intron 1 of 31)	1398	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
215096	chr7	155203401	155203800	+	0	NA	Intergenic	Intergenic	-94172	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
176143	chr4	83138771	83140150	+	0	NA	Intergenic	Intergenic	-24731	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
39154	chr11	57312371	57312530	+	0	NA	intron (NM_033396, intron 5 of 11)	intron (NM_033396, intron 5 of 11)	12502	NM_033396	85456		NM_033396	ENSG00000149115	TNKS1BP1	CNOT12|TAB182	tankyrase 1 binding protein 1	protein-coding
185852	chr5	132489611	132492100	+	0	NA	promoter-TSS (NM_002198)	promoter-TSS (NM_002198)	-82	NM_001354925	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
62342	chr13	99124651	99125450	+	0	NA	Intergenic	Intergenic	38327	NR_047482	100861541		NR_047482		DOCK9-DT	DOCK9-AS2	DOCK9 divergent transcript	ncRNA
8480	chr1	40807751	40808330	+	0	NA	intron (NM_172163, intron 1 of 12)	AluJo|SINE|Alu	24253	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
44388	chr11	102940921	102941200	+	0	NA	Intergenic	Intergenic	14672	NM_002427	4322		NM_002427	ENSG00000137745	MMP13	CLG3|MANDP1|MDST|MMP-13	matrix metallopeptidase 13	protein-coding
177753	chr4	122619321	122620080	+	0	NA	intron (NR_104126, intron 1 of 10)	intron (NR_104126, intron 1 of 10)	717	NR_104126	100996941		NR_104126	ENSG00000227145	IL21-AS1	-	IL21 antisense RNA 1	ncRNA
104311	chr17	80901701	80902150	+	0	NA	intron (NM_020761, intron 20 of 33)	L2a|LINE|L2	69288	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
217137	chr8	25454371	25454730	+	0	NA	intron (NM_017634, intron 1 of 11)	intron (NM_017634, intron 1 of 11)	3883	NM_017634	54793		NM_017634	ENSG00000104756	KCTD9	BTBD27	potassium channel tetramerization domain containing 9	protein-coding
72157	chr15	29110151	29110450	+	0	NA	TTS (NM_001353795)	TTS (NM_001353795)	39642	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
41852	chr11	67157221	67157880	+	0	NA	intron (NM_012308, intron 2 of 20)	AluSx|SINE|Alu	38287	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
159535	chr3	14461701	14462000	+	0	NA	intron (NR_103507, intron 6 of 13)	intron (NR_103507, intron 6 of 13)	59244	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
98656	chr17	47829421	47830700	+	0	NA	intron (NM_148887, intron 1 of 5)	intron (NM_148887, intron 1 of 5)	1481	NR_037575	124995		NM_145255	ENSG00000159111	MRPL10	L10MT|MRP-L10|MRP-L8|MRPL8|RPML8|uL10m	mitochondrial ribosomal protein L10	protein-coding
132494	chr2	105994471	105994650	+	0	NA	Intergenic	LTR14B|LTR|ERVK	-71128	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
189869	chr5	177302401	177302700	+	0	NA	intron (NM_130781, intron 5 of 8)	intron (NM_130781, intron 5 of 8)	1169	NM_001031677	53917		NM_130781	ENSG00000169228	RAB24	-	RAB24, member RAS oncogene family	protein-coding
143170	chr20	24136771	24136930	+	0	NA	Intergenic	Intergenic	-62917	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
108116	chr18	62249271	62249800	+	0	NA	intron (NR_144408, intron 14 of 32)	intron (NR_144408, intron 14 of 32)	62280	NR_144403	57614		NM_020854	ENSG00000134444	RELCH	HsT3308|HsT885|KIAA1468	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	protein-coding
176392	chr4	88699121	88699380	+	0	NA	intron (NM_001375479, intron 23 of 25)	intron (NM_001375479, intron 23 of 25)	-1421	NM_153757	266812		NM_153757	ENSG00000177432	NAP1L5	DRLM	nucleosome assembly protein 1 like 5	protein-coding
201569	chr6	149323371	149323530	+	0	NA	intron (NM_015093, intron 1 of 8)	intron (NM_015093, intron 1 of 8)	5150	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
131567	chr2	96810701	96810900	+	0	NA	3' UTR (NM_020184, exon 7 of 7)	3' UTR (NM_020184, exon 7 of 7)	2857	NR_149141	100506036		NR_149141	ENSG00000273265	CNNM3-DT	-	CNNM3 divergent transcript	ncRNA
208610	chr7	72955871	72956030	+	0	NA	Intergenic	AluJr|SINE|Alu	-1187	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
145306	chr20	41052071	41052230	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	23328	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
1293	chr1	2336221	2336830	+	0	NA	exon (NM_024848, exon 12 of 14)	exon (NM_024848, exon 12 of 14)	16136	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
161441	chr3	42048371	42048900	+	0	NA	Intergenic	AluJb|SINE|Alu	-38565	NM_001349245	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
6681	chr1	29143671	29144230	+	0	NA	Intergenic	AluY|SINE|Alu	-20047	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
221028	chr8	116693471	116694080	+	0	NA	intron (NM_003756, intron 2 of 7)	AluJr|SINE|Alu	41675	NR_136278	105375713		NR_136278	ENSG00000289382	LOC105375713	-	uncharacterized LOC105375713	ncRNA
90213	chr17	494521	495400	+	0	NA	Intergenic	Intergenic	-49020	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
215068	chr7	153989951	153990230	+	0	NA	intron (NR_157195, intron 1 of 24)	intron (NR_157195, intron 1 of 24)	-62308	NM_130797	1804		NM_001936	ENSG00000130226	DPP6	DPL1|DPPX|MRD33|VF2	dipeptidyl peptidase like 6	protein-coding
153171	chr22	23822521	23822980	+	0	NA	intron (NM_003073, intron 6 of 8).2	L2a|LINE|L2	16256	NM_001135751	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
205894	chr7	25117521	25118750	+	0	NA	TTS (NM_018947)	TTS (NM_018947)	7125	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
25225	chr10	5816051	5816350	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2651	NM_001115156	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
67150	chr14	68734201	68735000	+	0	NA	Intergenic	Intergenic	58467	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
201680	chr6	149521321	149521780	+	0	NA	intron (NM_139126, intron 9 of 12)	MER46C|DNA|TcMar-Tigger	24493	NM_139126	85313		NM_139126	ENSG00000131013	PPIL4	HDCME13P	peptidylprolyl isomerase like 4	protein-coding
84721	chr16	30901621	30903780	+	0	NA	non-coding (NR_165660, exon 3 of 3)	non-coding (NR_165660, exon 3 of 3)	6086	NM_001142544	1489		NM_001330	ENSG00000150281	CTF1	CT-1|CT1	cardiotrophin 1	protein-coding
124554	chr2	437721	438930	+	0	NA	Intergenic	Intergenic	54330	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
36012	chr11	2901651	2903050	+	0	NA	promoter-TSS (NM_002555).2	promoter-TSS (NM_002555).2	-70	NM_001315501	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
204000	chr7	1827151	1827750	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	16803	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
114501	chr19	12777591	12778480	+	0	NA	Intergenic	Intergenic	-2483	NM_013312	29911		NM_013312	ENSG00000095066	HOOK2	HK2	hook microtubule tethering protein 2	protein-coding
167057	chr3	126913571	126913730	+	0	NA	intron (NM_032343, intron 5 of 7)	intron (NM_032343, intron 5 of 7)	-74944	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
101186	chr17	65228671	65230000	+	0	NA	Intergenic	Intergenic	91965	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
28652	chr10	59887051	59887350	+	0	NA	intron (NM_005436, intron 1 of 8)	MIRb|SINE|MIR	19356	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
235595	chrX	47595951	47596250	+	0	NA	intron (NM_133499, intron 5 of 12)	L1M4|LINE|L1	8671	NR_039926	100616147		NR_039926	ENSG00000263858	MIR4769	-	microRNA 4769	ncRNA
129374	chr2	68792671	68793800	+	0	NA	intron (NM_001364819, intron 4 of 10)	L1PB4|LINE|L1	18325	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
131710	chr2	97761101	97762980	+	0	NA	exon (NM_015348, exon 36 of 41)	exon (NM_015348, exon 36 of 41)	28740	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
6212	chr1	27478001	27478200	+	0	NA	intron (NM_006990, intron 1 of 8)	AluSz|SINE|Alu	12067	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
78768	chr15	99245771	99245930	+	0	NA	intron (NM_001353869, intron 2 of 12)	AluSx1|SINE|Alu	3731	NR_109947	64927		NM_022905	ENSG00000103852	TTC23	HCC-8	tetratricopeptide repeat domain 23	protein-coding
184926	chr5	112931351	112931650	+	0	NA	Intergenic	Intergenic	-9273	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
70570	chr14	102597801	102598780	+	0	NA	intron (NM_015156, intron 2 of 11)	intron (NM_015156, intron 2 of 11)	5641	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
203548	chr7	883901	885080	+	0	NA	intron (NM_015949, intron 1 of 8)	intron (NM_015949, intron 1 of 8)	7936	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
82593	chr16	18803751	18804630	+	0	NA	TTS (NM_015092)	TTS (NM_015092)	-2641	NM_015161	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
154407	chr22	35323671	35324130	+	0	NA	exon (NM_005488, exon 6 of 15)	exon (NM_005488, exon 6 of 15)	-11740	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
183873	chr5	87272401	87272880	+	0	NA	intron (NM_022650, intron 1 of 24)	intron (NM_022650, intron 1 of 24)	3703	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
193698	chr6	31125701	31125900	+	0	NA	5' UTR (NM_014068, exon 2 of 6).5	5' UTR (NM_014068, exon 2 of 6).5	-5354	NM_001264	1041		NM_001264	ENSG00000204539	CDSN	HTSS|HTSS1|HYPT2|PSS|PSS1	corneodesmosin	protein-coding
190983	chr6	2999301	3000800	+	0	NA	promoter-TSS (NM_001318940)	promoter-TSS (NM_001318940)	-108	NM_001318940	4835		NM_000904	ENSG00000124588	NQO2	DHQV|DIA6|NMOR2|QR2	N-ribosyldihydronicotinamide:quinone dehydrogenase 2	protein-coding
138780	chr2	216031901	216032100	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	1804	NM_001372190	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
204281	chr7	2657401	2657800	+	0	NA	intron (NM_025250, intron 11 of 13)	MIRb|SINE|MIR	-21922	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
212333	chr7	127404251	127404780	+	0	NA	Intergenic	Intergenic	-11807	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
220355	chr8	99663521	99663780	+	0	NA	intron (NM_152564, intron 35 of 61)	Kanga1|DNA|TcMar-Tc2	-126789	NR_030596	100126309		NR_030596	ENSG00000216069	MIR875	MIRN875|hsa-mir-875	microRNA 875	ncRNA
210035	chr7	94392021	94392280	+	0	NA	promoter-TSS (NR_147206)	promoter-TSS (NR_147206)	42	NR_147206	101927525		NR_147206		COL1A2-AS1	TCONS_00013888|lncRNA8975-1	COL1A2 antisense RNA 1	ncRNA
190212	chr5	178226071	178226830	+	0	NA	intron (NM_153373, intron 3 of 12)	MER21A|LTR|ERVL	6352	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
84883	chr16	31188451	31188570	+	0	NA	intron (NR_028388, intron 7 of 13)	intron (NR_028388, intron 7 of 13)	8371	NM_004960	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
162159	chr3	46974271	46974950	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	1891	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
222053	chr8	130284301	130285100	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	11833	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
186884	chr5	139550001	139550750	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-10791	NM_181838	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
29600	chr10	71745351	71746250	+	0	NA	intron (NM_022124, intron 36 of 67)	intron (NM_022124, intron 36 of 67)	-7950	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
78539	chr15	92961451	92962200	+	0	NA	intron (NM_001271, intron 16 of 38)	L1MB1|LINE|L1	57426	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
199643	chr6	121959501	121959700	+	0	NA	Intergenic	Intergenic	-439951	NM_001135564	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
54959	chr12	96255551	96255650	+	0	NA	intron (NM_001303511, intron 1 of 2)	MER4E|LTR|ERV1	102	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
214216	chr7	148726371	148726880	+	0	NA	intron (NM_001370664, intron 1 of 21)	intron (NM_001370664, intron 1 of 21)	26915	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
200289	chr6	132800401	132800850	+	0	NA	Intergenic	AluSp|SINE|Alu	-1988	NM_052831	116843		NM_052831	ENSG00000146409	SLC18B1	C6orf192|VPAT|dJ55C23.6	solute carrier family 18 member B1	protein-coding
130287	chr2	84894101	84894300	+	0	NA	Intergenic	Intergenic	-11456	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
149013	chr21	14535751	14535850	+	0	NA	intron (NM_001286523, intron 1 of 8)	MLT1B|LTR|ERVL-MaLR	10515	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
206461	chr7	32915021	32915280	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-23390	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
13675	chr1	116570901	116571880	+	0	NA	promoter-TSS (NM_001779)	promoter-TSS (NM_001779)	-297	NM_001144822	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
217269	chr8	27334571	27334930	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	9186	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
198475	chr6	106194971	106196130	+	0	NA	intron (NR_104402, intron 5 of 5)	intron (NR_104402, intron 5 of 5)	96609	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
229326	chr9	120896371	120896550	+	0	NA	Intergenic	AluYg6|SINE|Alu	-1564	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
46930	chr11	134330621	134330880	+	0	NA	Intergenic	Intergenic	-1124	NM_138342	89944		NM_138342	ENSG00000149328	GLB1L2	MST114|MSTP114	galactosidase beta 1 like 2	protein-coding
191678	chr6	13478571	13479100	+	0	NA	intron (NM_001242629, intron 1 of 1)	intron (NM_001242629, intron 1 of 1)	-6772	NR_038459	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
143723	chr20	32285051	32286600	+	0	NA	intron (NM_004798, intron 1 of 8)	intron (NM_004798, intron 1 of 8)	8174	NM_004798	9371		NM_004798	ENSG00000101350	KIF3B	FLA8|HH0048|KLP-11|OTSC12|RP89	kinesin family member 3B	protein-coding
13714	chr1	116772271	116772650	+	0	NA	Intergenic	MIRb|SINE|MIR	18030	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
17516	chr1	156753201	156753850	+	0	NA	Intergenic	Intergenic	-1077	NM_001319186	3068		NM_004494	ENSG00000143321	HDGF	HMG1L2	heparin binding growth factor	protein-coding
112164	chr19	5648951	5649430	+	0	NA	exon (NM_001201340, exon 6 of 20)	exon (NM_001201340, exon 6 of 20)	26107	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
93463	chr17	18783401	18783900	+	0	NA	intron (NM_001316919, intron 1 of 6)	L2a|LINE|L2	2336	NM_001316919	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
181893	chr5	54531051	54531350	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	13441	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
132006	chr2	100600151	100600250	+	0	NA	Intergenic	AluY|SINE|Alu	-3539	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
209593	chr7	77542071	77543100	+	0	NA	intron (NM_001131008, intron 1 of 17)	intron (NM_001131008, intron 1 of 17)	4542	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
123408	chr19	53990571	53991130	+	0	NA	promoter-TSS (NR_102308)	promoter-TSS (NR_102308)	-299	NR_102308	59285		NM_031897	ENSG00000130433	CACNG6	-	calcium voltage-gated channel auxiliary subunit gamma 6	protein-coding
178930	chr4	158856821	158857200	+	0	NA	intron (NM_001346043, intron 8 of 15)	intron (NM_001346043, intron 8 of 15)	51171	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
206790	chr7	36776701	36778350	+	0	NA	Intergenic	Intergenic	-52976	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
179220	chr4	173521971	173522700	+	0	NA	Intergenic	CpG	-3191	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
152638	chr22	21513851	21514450	+	0	NA	intron (NR_003700, intron 1 of 16)	intron (NR_003700, intron 1 of 16)	3341	NR_003700	375133		NR_003700	ENSG00000293427	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
215172	chr7	155665271	155665430	+	0	NA	intron (NM_053043, intron 2 of 17)	intron (NM_053043, intron 2 of 17)	20689	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
166549	chr3	115169501	115170000	+	0	NA	Intergenic	Intergenic	-22462	NM_001348803	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
96984	chr17	42270471	42271400	+	0	NA	intron (NM_012448, intron 1 of 18)	MIR|SINE|MIR	5456	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
198562	chr6	106979321	106979620	+	0	NA	Intergenic	Intergenic	-2615	NM_001291738	100133941		NM_013230	ENSG00000272398	CD24	CD24A	CD24 molecule	protein-coding
2849	chr1	11271271	11271430	+	0	NA	Intergenic	AluY|SINE|Alu	-1848	NM_001330350	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
50059	chr12	44679271	44679630	+	0	NA	intron (NM_001145108, intron 12 of 19)	intron (NM_001145108, intron 12 of 19)	196211	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
143624	chr20	31746421	31746680	+	0	NA	intron (NM_012112, intron 2 of 17)	intron (NM_012112, intron 2 of 17)	7260	NM_012112	22974		NM_012112	ENSG00000088325	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2 microtubule nucleation factor	protein-coding
52691	chr12	56494571	56494750	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-6246	NM_001280798	27165		NM_013267	ENSG00000135423	GLS2	GA|GLS|LGA|hLGA	glutaminase 2	protein-coding
100013	chr17	57939571	57940000	+	0	NA	intron (NM_001271875, intron 1 of 10)	MLT1O|LTR|ERVL-MaLR	15627	NM_001271875	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
239400	chrY	22855451	22855550	+	0	NA	Intergenic	L1PA2|LINE|L1	3916	NR_002180	474151		NR_002180	ENSG00000227439	TTTY17B	NCRNA00141	testis expressed transcript, Y-linked 17B	ncRNA
28917	chr10	63166601	63167250	+	0	NA	TTS (NM_001318154)	TTS (NM_001318154)	33597	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
67411	chr14	69811551	69812050	+	0	NA	promoter-TSS (NR_149012)	promoter-TSS (NR_149012)	40	NR_149012	100506358		NR_149012		LOC100506358	-	uncharacterized LOC100506358	ncRNA
163033	chr3	49813401	49815230	+	0	NA	promoter-TSS (NM_003335)	promoter-TSS (NM_003335)	-362	NM_003335	7318		NM_003335	ENSG00000182179	UBA7	D8|UBA1B|UBE1L|UBE2|UBE7	ubiquitin like modifier activating enzyme 7	protein-coding
107950	chr18	58195201	58195800	+	0	NA	promoter-TSS (NM_001144970)	promoter-TSS (NM_001144970)	95	NM_001144970	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
102315	chr17	75366471	75366630	+	0	NA	intron (NM_203506, intron 2 of 4)	AluJb|SINE|Alu	39128	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
146067	chr20	47497971	47499050	+	0	NA	Intergenic	L2a|LINE|L2	-3377	NM_181659	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
223139	chr8	143503021	143503280	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	3098	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
20204	chr1	193120571	193120730	+	0	NA	Intergenic	Intergenic	-1381	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
110509	chr19	2060051	2060150	+	0	NA	Intergenic	Intergenic	-8856	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
151191	chr21	45085921	45086180	+	0	NA	intron (NM_001346688, intron 1 of 11)	Charlie25|DNA|hAT-Charlie	10999	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
111111	chr19	3211671	3211830	+	0	NA	Intergenic	Intergenic	-12911	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
199744	chr6	125791501	125792200	+	0	NA	intron (NM_001199621, intron 1 of 14)	intron (NM_001199621, intron 1 of 14)	890	NM_001199621	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
168782	chr3	151468371	151468600	+	0	NA	intron (NM_001385063, intron 1 of 8)	intron (NM_001385063, intron 1 of 8)	-7424	NM_178822	285313		NM_178822	ENSG00000152580	IGSF10	CMF608	immunoglobulin superfamily member 10	protein-coding
159652	chr3	15330151	15330650	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	2186	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
86237	chr16	58155801	58156400	+	0	NA	Intergenic	Intergenic	-26675	NR_136632	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
8573	chr1	41369351	41370130	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	5929	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
61962	chr13	79398901	79399100	+	0	NA	intron (NM_022118, intron 1 of 20)	intron (NM_022118, intron 1 of 20)	7221	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
141190	chr2	239302301	239302780	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-2922	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
23799	chr1	234309701	234310480	+	0	NA	intron (NM_173508, intron 4 of 7)	intron (NM_173508, intron 4 of 7)	3623	NR_039818	100616380		NR_039818	ENSG00000264377	MIR4671	-	microRNA 4671	ncRNA
230084	chr9	127504971	127505130	+	0	NA	TTS (NM_001035534)	TTS (NM_001035534)	52795	NM_001005374	90678		NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
220967	chr8	115127951	115128050	+	0	NA	Intergenic	Intergenic	540013	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
35559	chr11	1654771	1655130	+	0	NA	Intergenic	Intergenic	-10647	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
31551	chr10	97096021	97097500	+	0	NA	intron (NM_003061, intron 4 of 36)	intron (NM_003061, intron 4 of 36)	-5996	NR_038330	100505540		NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
185780	chr5	132404501	132404900	+	0	NA	Intergenic	AluSx|SINE|Alu	-6229	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
237898	chrX	131747251	131747350	+	0	NA	intron (NR_152876, intron 8 of 9)	intron (NR_152876, intron 8 of 9)	83343	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
76693	chr15	75747921	75748180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7973	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
161712	chr3	43699971	43700480	+	0	NA	intron (NM_001355186, intron 2 of 7)	MIR3|SINE|MIR	-8631	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
107600	chr18	48915001	48915400	+	0	NA	Intergenic	Intergenic	27607	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
72359	chr15	31347001	31348050	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	20690	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
73839	chr15	49421821	49422280	+	0	NA	TTS (NM_001330293)	TTS (NM_001330293)	-1192	NM_002009	2252		NM_002009	ENSG00000140285	FGF7	HBGF-7|KGF	fibroblast growth factor 7	protein-coding
118181	chr19	35064601	35064950	+	0	NA	intron (NM_182983, intron 9 of 12)	MIRb|SINE|MIR	23054	NM_001384133	3249		NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
29479	chr10	70568721	70568980	+	0	NA	TTS (NM_014431)	TTS (NM_014431)	33891	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
207106	chr7	40644721	40644980	+	0	NA	intron (NM_001193312, intron 11 of 12)	intron (NM_001193312, intron 11 of 12)	335089	NR_110831	101928744		NR_110831	ENSG00000232458	LINC01450	-	long intergenic non-protein coding RNA 1450	ncRNA
159902	chr3	16904301	16904500	+	0	NA	intron (NM_001144382, intron 1 of 5)	Charlie24|DNA|hAT-Charlie	19445	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
21862	chr1	207554871	207555180	+	0	NA	intron (NM_000651, intron 19 of 46)	Tigger1|DNA|TcMar-Tigger	58868	NM_000651	1378		NM_000573	ENSG00000203710	CR1	C3BR|C4BR|CD35|KN	complement C3b/C4b receptor 1 (Knops blood group)	protein-coding
125275	chr2	10451051	10451880	+	0	NA	intron (NR_110597, intron 2 of 4)	intron (NR_110597, intron 2 of 4)	1737	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
155580	chr22	38745651	38745750	+	0	NA	exon (NM_015374, exon 8 of 18)	exon (NM_015374, exon 8 of 18)	9766	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
38579	chr11	46120801	46122700	+	0	NA	promoter-TSS (NM_001352027)	promoter-TSS (NM_001352027)	-296	NM_001352032	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
28725	chr10	61904621	61905500	+	0	NA	intron (NM_032199, intron 2 of 9)	intron (NM_032199, intron 2 of 9)	3361	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
196274	chr6	42971221	42971480	+	0	NA	intron (NM_000287, intron 3 of 16)	intron (NM_000287, intron 3 of 16)	7831	NM_001316313	5190		NM_000287	ENSG00000124587	PEX6	HMLR2|PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
55030	chr12	96386901	96387300	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	13339	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
49048	chr12	14390721	14391780	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	5969	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
34118	chr10	127254321	127254580	+	0	NA	intron (NM_001377553, intron 28 of 50)	L1MC5a|LINE|L1	-57859	NM_001039762	642938		NM_001039762	ENSG00000188916	INSYN2A	C10orf141|FAM196A|INSYN2	inhibitory synaptic factor 2A	protein-coding
163339	chr3	50416801	50417250	+	0	NA	intron (NM_006030, intron 3 of 37)	intron (NM_006030, intron 3 of 37)	51662	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
211785	chr7	107582471	107583230	+	0	NA	intron (NR_163934, intron 2 of 8)	A-rich|Low_complexity|Low_complexity	2604	NR_163927	55973		NM_018844	ENSG00000075790	BCAP29	B29|BAP29	B cell receptor associated protein 29	protein-coding
174257	chr4	38052471	38052730	+	0	NA	intron (NM_001253912, intron 12 of 20)	AluSz|SINE|Alu	-57581	NM_001253913	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
112505	chr19	6468801	6469580	+	0	NA	intron (NM_024898, intron 19 of 22)	AluSq|SINE|Alu	4919	NM_174881	92359		NM_139161	ENSG00000130545	CRB3	-	crumbs cell polarity complex component 3	protein-coding
13222	chr1	112664171	112664330	+	0	NA	intron (NM_006135, intron 7 of 9)	intron (NM_006135, intron 7 of 9)	-10062	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
173737	chr4	16083151	16083450	+	0	NA	promoter-TSS (NM_001145850)	promoter-TSS (NM_001145850)	36	NM_001371407	8842		NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding
100319	chr17	59836071	59836430	+	0	NA	intron (NM_001329395, intron 11 of 12)	AluJb|SINE|Alu	-5016	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
213153	chr7	131522321	131522800	+	0	NA	intron (NM_005397, intron 1 of 7)	L1MCc|LINE|L1	34068	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
230317	chr9	127965071	127966480	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	-15061	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
114386	chr19	12552951	12553250	+	0	NA	Intergenic	AluSx|SINE|Alu	-1618	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
218715	chr8	58651851	58652150	+	0	NA	intron (NM_003580, intron 1 of 30)	intron (NM_003580, intron 1 of 30)	7407	NM_001144772	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
172553	chr4	2402201	2402900	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	16095	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
34811	chr11	282951	283600	+	0	NA	intron (NM_138329, intron 5 of 7)	MIR|SINE|MIR	4705	NM_138329	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
33661	chr10	119818471	119818930	+	0	NA	promoter-TSS (NM_001243194)	promoter-TSS (NM_001243194)	-557	NM_001243194	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
155669	chr22	39027801	39028200	+	0	NA	intron (NM_152426, intron 4 of 6)	intron (NM_152426, intron 4 of 6)	6873	NM_152426	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
237866	chrX	130266801	130267000	+	0	NA	intron (NM_017666, intron 1 of 18)	AluSg|SINE|Alu	1999	NM_017666	55609		NM_017666	ENSG00000056277	ZNF280C	SUHW3|ZNF633|ZPET	zinc finger protein 280C	protein-coding
30530	chr10	79374421	79375280	+	0	NA	Intergenic	Intergenic	27381	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
104817	chr17	81808721	81809300	+	0	NA	5' UTR (NM_000160, exon 2 of 14)	5' UTR (NM_000160, exon 2 of 14)	4860	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
234819	chrX	24152771	24153550	+	0	NA	intron (NM_001330327, intron 3 of 10)	intron (NM_001330327, intron 3 of 10)	3431	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
16688	chr1	155200701	155201680	+	0	NA	exon (NM_001252607, exon 11 of 22)	exon (NM_001252607, exon 11 of 22)	6013	NR_030281	693235		NR_030281	ENSG00000284586	MIR92B	MIRN92B|hsa-mir-92b|mir-92b	microRNA 92b	ncRNA
193283	chr6	30013321	30013750	+	0	NA	non-coding (NR_145416, exon 7 of 7)	non-coding (NR_145416, exon 7 of 7)	7564	NR_024240	3137		NR_024240	ENSG00000290574	HLA-J	CDA12|D6S203|HLA-59|HLA-CDA12	major histocompatibility complex, class I, J (pseudogene)	pseudo
68817	chr14	91260821	91261780	+	0	NA	Intergenic	Intergenic	-7420	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
166988	chr3	125836021	125837100	+	0	NA	intron (NR_125396, intron 2 of 2)	HERVS71-int|LTR|ERV1	-46008	NR_031687	100302204		NR_031687	ENSG00000221737	MIR548I1	MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1	microRNA 548i-1	ncRNA
121936	chr19	48456101	48456650	+	0	NA	3' UTR (NM_031485, exon 7 of 7)	3' UTR (NM_031485, exon 7 of 7)	801	NM_013348	3770		NM_013348	ENSG00000182324	KCNJ14	IRK4|KIR2.4	potassium inwardly rectifying channel subfamily J member 14	protein-coding
3959	chr1	18643201	18644000	+	0	NA	intron (NM_001135254, intron 4 of 8)	CpG	12754	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
92298	chr17	8112051	8112150	+	0	NA	exon (NM_001369446, exon 6 of 15)	exon (NM_001369446, exon 6 of 15)	6203	NM_001369446	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
53636	chr12	68198071	68198700	+	0	NA	Intergenic	AluSx|SINE|Alu	27425	NM_018402	55801		NM_018402	ENSG00000111536	IL26	AK155|IL-26	interleukin 26	protein-coding
145581	chr20	44515421	44515880	+	0	NA	intron (NM_006811, intron 1 of 9)	L1MB5|LINE|L1	6420	NM_006811	10955		NM_006811	ENSG00000132824	SERINC3	AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1	serine incorporator 3	protein-coding
193912	chr6	31630471	31631530	+	0	NA	intron (NM_004638, intron 15 of 30).7	FLAM_C|SINE|Alu	-2787	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
15447	chr1	150318571	150318900	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2733	NR_146767	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
48662	chr12	10446051	10446350	+	0	NA	3' UTR (NM_002259, exon 7 of 7)	3' UTR (NM_002259, exon 7 of 7)	7177	NM_002259	3821		NM_002259	ENSG00000134545	KLRC1	CD159A|NKG2|NKG2A	killer cell lectin like receptor C1	protein-coding
80518	chr16	2756321	2756880	+	0	NA	exon (NM_016333, exon 2 of 15)	exon (NM_016333, exon 2 of 15)	3962	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
91866	chr17	7233911	7235080	+	0	NA	promoter-TSS (NM_004422)	promoter-TSS (NM_004422)	22	NM_004422	1856		NM_004422	ENSG00000004975	DVL2	-	dishevelled segment polarity protein 2	protein-coding
169126	chr3	155859651	155860300	+	0	NA	Intergenic	Intergenic	-5516	NM_001190992	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
202285	chr6	157145221	157145680	+	0	NA	intron (NM_001371656, intron 9 of 20)	intron (NM_001371656, intron 9 of 20)	109023	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
68034	chr14	75177851	75177950	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1288	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
149319	chr21	29026901	29027100	+	0	NA	intron (NM_001032410, intron 2 of 18)	intron (NM_001032410, intron 2 of 18)	2332	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
1962	chr1	6585921	6587600	+	0	NA	exon (NM_001278648, exon 5 of 11)	exon (NM_001278648, exon 5 of 11)	6766	NM_001278647	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
22043	chr1	210446451	210446980	+	0	NA	intron (NM_018194, intron 7 of 11).2	L2a|LINE|L2	117349	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
90335	chr17	1177921	1178180	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	1931	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
215404	chr7	157568421	157569450	+	0	NA	exon (NM_001308267, exon 20 of 22)	exon (NM_001308267, exon 20 of 22)	5487	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
186011	chr5	133961071	133961730	+	0	NA	intron (NM_020199, intron 1 of 2)	AluY|SINE|Alu	7225	NM_020199	56951		NM_020199	ENSG00000113583	C5orf15	HTGN29|KCT2	chromosome 5 open reading frame 15	protein-coding
225451	chr9	35109871	35110030	+	0	NA	intron (NM_025182, intron 1 of 8)	intron (NM_025182, intron 1 of 8)	1502	NM_001317991	80256		NM_025182	ENSG00000005238	ATOSB	FAM214B|KIAA1539	atos homolog B	protein-coding
27240	chr10	29513021	29513380	+	0	NA	intron (NM_021738, intron 16 of 37)	intron (NM_021738, intron 16 of 37)	31897	NR_030335	693189		NR_030335	ENSG00000207612	MIR604	MIRN604|hsa-mir-604	microRNA 604	ncRNA
88694	chr16	85811971	85812530	+	0	NA	Intergenic	HAL1M8|LINE|L1	12555	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
9936	chr1	54487901	54488900	+	0	NA	Intergenic	CpG	-59828	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
58946	chr13	19777001	19777250	+	0	NA	intron (NM_001354909, intron 1 of 8)	AluSx|SINE|Alu	5820	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
84130	chr16	29700121	29700900	+	0	NA	Intergenic	L2a|LINE|L2	21330	NR_134536	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
80382	chr16	2537221	2538800	+	0	NA	promoter-TSS (NM_001261816)	promoter-TSS (NM_001261816)	-11	NM_031268	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
171528	chr3	196695201	196696630	+	0	NA	Intergenic	AluSx1|SINE|Alu	16335	NM_001379468	84984		NM_032898	ENSG00000174007	CEP19	C3orf34|MOSPGF	centrosomal protein 19	protein-coding
75268	chr15	65029071	65030380	+	0	NA	promoter-TSS (NM_139242)	promoter-TSS (NM_139242)	-86	NM_139242	123263		NM_139242	ENSG00000103707	MTFMT	COXPD15|FMT1|MC1DN27	mitochondrial methionyl-tRNA formyltransferase	protein-coding
138852	chr2	216619551	216619850	+	0	NA	Intergenic	Intergenic	-12762	NR_110392	101928232		NR_110392		LINC01280	-	long intergenic non-protein coding RNA 1280	ncRNA
191351	chr6	7142371	7142780	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	34614	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
52399	chr12	55741071	55741430	+	0	NA	Intergenic	Intergenic	-1872	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
54085	chr12	76057501	76057700	+	0	NA	intron (NM_139207, intron 6 of 15)	intron (NM_139207, intron 6 of 15)	-25824	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
159427	chr3	13621451	13622200	+	0	NA	exon (NM_001165035, exon 9 of 18)	exon (NM_001165035, exon 9 of 18)	3444	NR_132775	106635526		NR_132775		SNORA93	-	small nucleolar RNA, H/ACA box 93	snoRNA
233186	chr9	137197971	137198130	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	2691	NM_001128228	286262		NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79	taperin	protein-coding
25136	chr10	4127771	4128130	+	0	NA	Intergenic	Intergenic	76224	NR_120632								
17224	chr1	156284351	156284450	+	0	NA	promoter-TSS (NM_032323)	promoter-TSS (NM_032323)	75	NM_032323	84283		NM_032323	ENSG00000163472	TMEM79	MATT	transmembrane protein 79	protein-coding
198798	chr6	109004421	109004680	+	0	NA	intron (NM_014454, intron 1 of 9)	AluSc8|SINE|Alu	4438	NM_001199934	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
87279	chr16	70021971	70022430	+	0	NA	intron (NR_003610, intron 11 of 25)	intron (NR_003610, intron 11 of 25)	-8146	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
133680	chr2	127080301	127081300	+	0	NA	intron (NM_139345, intron 1 of 15)	intron (NM_139345, intron 1 of 15)	1265	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
134353	chr2	136131101	136133330	+	0	NA	Intergenic	Intergenic	-14066	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
189906	chr5	177357151	177358500	+	0	NA	promoter-TSS (NM_001366618)	promoter-TSS (NM_001366618)	-99	NM_006480	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
56653	chr12	119666571	119666730	+	0	NA	Intergenic	Intergenic	-1483	NM_006253	5564		NM_006253	ENSG00000111725	PRKAB1	AMPK|HAMPKb	protein kinase AMP-activated non-catalytic subunit beta 1	protein-coding
227785	chr9	93129401	93129700	+	0	NA	intron (NM_004148, intron 1 of 3)	intron (NM_004148, intron 1 of 3)	4701	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
102426	chr17	75665651	75665950	+	0	NA	intron (NM_001003716, intron 2 of 7)	intron (NM_001003716, intron 2 of 7)	-1316	NR_126037	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
126920	chr2	32835251	32835350	+	0	NA	intron (NR_027098, intron 1 of 5)	MSTB1|LTR|ERVL-MaLR	9867	NR_027098	285045		NR_027098	ENSG00000230876	LINC00486	-	long intergenic non-protein coding RNA 486	ncRNA
107878	chr18	55780121	55780380	+	0	NA	non-coding (NR_145453, exon 1 of 2)	non-coding (NR_145453, exon 1 of 2)	171	NR_145453	100132501		NR_145452		LINC01415	TCONS_00026208	long intergenic non-protein coding RNA 1415	ncRNA
46774	chr11	129894851	129896230	+	0	NA	promoter-TSS (NM_001143835)	promoter-TSS (NM_001143835)	38	NM_001143835	4798		NM_006165	ENSG00000170322	NFRKB	INO80G	nuclear factor related to kappaB binding protein	protein-coding
10797	chr1	77685521	77685780	+	0	NA	Intergenic	MIR|SINE|MIR	-2223	NM_001308237	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
38320	chr11	44094221	44094700	+	0	NA	Intergenic	Intergenic	-1218	NM_207122	2132		NM_000401	ENSG00000151348	EXT2	SOTV|SSMS	exostosin glycosyltransferase 2	protein-coding
168807	chr3	152205201	152205980	+	0	NA	promoter-TSS (NR_136178)	promoter-TSS (NR_136178)	-161	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
203567	chr7	902721	903330	+	0	NA	intron (NM_006869, intron 6 of 10)	intron (NM_006869, intron 6 of 10)	17864	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
128369	chr2	55012471	55013000	+	0	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	-2463	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133569	chr2	121505201	121505400	+	0	NA	intron (NM_001142274, intron 7 of 37)	intron (NM_001142274, intron 7 of 37)	-25580	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
115244	chr19	14520771	14521000	+	0	NA	intron (NM_001313964, intron 2 of 3)	AluJr|SINE|Alu	-2488	NM_006145	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
200853	chr6	138456001	138456830	+	0	NA	intron (NM_020464, intron 3 of 6)	intron (NM_020464, intron 3 of 6)	-21121	NR_036099	100423001		NR_036099	ENSG00000266555	MIR3145	mir-3145	microRNA 3145	ncRNA
70099	chr14	100212621	100213230	+	0	NA	Intergenic	Intergenic	-26219	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
72651	chr15	38503871	38504030	+	0	NA	intron (NM_005739, intron 10 of 16)	Tigger3b|DNA|TcMar-Tigger	49823	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
189656	chr5	176305251	176305750	+	0	NA	intron (NR_131772, intron 3 of 9)	SVA_F|Retroposon|SVA	-7645	NM_001308200	375484		NM_198567	ENSG00000170085	SIMC1	C5orf25|OOMA1|PLEIAD	SUMO interacting motifs containing 1	protein-coding
46615	chr11	128608801	128609200	+	0	NA	Intergenic	Intergenic	-21442	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
157629	chr22	46075221	46075480	+	0	NA	Intergenic	Intergenic	-4329	NR_148973	642648		NR_148973		LINC02939	-	long intergenic non-protein coding RNA 2939	ncRNA
235826	chrX	49277251	49278200	+	0	NA	intron (NM_033215, intron 1 of 3)	intron (NM_033215, intron 1 of 3)	7932	NM_033215	89801		NM_033215	ENSG00000049769	PPP1R3F	HB2E|LL0XNC01-7P3.1|R3F	protein phosphatase 1 regulatory subunit 3F	protein-coding
117936	chr19	33157951	33158280	+	0	NA	intron (NM_173479, intron 7 of 10)	intron (NM_173479, intron 7 of 10)	26001	NM_173479	126248		NM_173479	ENSG00000166359	WDR88	PQWD	WD repeat domain 88	protein-coding
1888	chr1	6439071	6439230	+	0	NA	intron (NM_031475, intron 2 of 12)	intron (NM_031475, intron 2 of 12)	-9254	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
191800	chr6	14276551	14277450	+	0	NA	Intergenic	(TCCTCT)n|Simple_repeat|Simple_repeat	8454	NR_108097	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
50985	chr12	49580221	49580880	+	0	NA	Intergenic	Intergenic	-12405	NM_001278341	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
95132	chr17	35044521	35044780	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	19057	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
215047	chr7	152585801	152586000	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	90241	NM_005431	7516		NM_005431	ENSG00000196584	XRCC2	FANCU|POF17|SPGF50	X-ray repair cross complementing 2	protein-coding
170089	chr3	182992651	182992750	+	0	NA	Intergenic	AluY|SINE|Alu	-6782	NM_001308101	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
98525	chr17	47646771	47647130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2969	NM_002265	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
81012	chr16	4200201	4200580	+	0	NA	intron (NM_001323667, intron 4 of 6)	intron (NM_001323667, intron 4 of 6)	41690	NM_001098814	6345		NM_001098814	ENSG00000185739	SRL	SAR	sarcalumenin	protein-coding
229415	chr9	121267821	121269330	+	0	NA	intron (NM_001127662, intron 1 of 16)	intron (NM_001127662, intron 1 of 16)	413	NM_001353059	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
32916	chr10	110212101	110213050	+	0	NA	intron (NM_001008541, intron 1 of 4)	MIR|SINE|MIR	2344	NM_001008541	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
194265	chr6	32589301	32590100	+	0	NA	exon (NM_001243965, exon 1 of 8)	exon (NM_001243965, exon 1 of 8)	136	NM_002124	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
57921	chr12	123533371	123534580	+	0	NA	promoter-TSS (NM_001319243)	promoter-TSS (NM_001319243)	-256	NM_178314	353116		NM_178314	ENSG00000188026	RILPL1	GOSPEL|OPDM4|RLP1	Rab interacting lysosomal protein like 1	protein-coding
119521	chr19	40554001	40554580	+	0	NA	exon (NM_020971, exon 23 of 36)	exon (NM_020971, exon 23 of 36)	-22583	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
209020	chr7	74372701	74372900	+	0	NA	intron (NM_032421, intron 8 of 15)	intron (NM_032421, intron 8 of 15)	-81106	NM_001199207	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
188874	chr5	159412051	159412950	+	0	NA	Intergenic	Intergenic	53776	NR_027110	285627		NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
131548	chr2	96762471	96763200	+	0	NA	intron (NM_020184, intron 1 of 6)	intron (NM_020184, intron 1 of 6)	1933	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
85185	chr16	46858921	46859180	+	0	NA	Intergenic	Intergenic	-25312	NM_133443	84706		NM_133443	ENSG00000166123	GPT2	ALT2|GPT 2|MRT49|NEDSPM	glutamic--pyruvic transaminase 2	protein-coding
197304	chr6	72570301	72570650	+	0	NA	Intergenic	L1PA2|LINE|L1	-51589	NM_001160132	56479		NM_019842	ENSG00000185760	KCNQ5	Kv7.5|MRD46	potassium voltage-gated channel subfamily Q member 5	protein-coding
203710	chr7	1054751	1055850	+	0	NA	promoter-TSS (NM_001303474)	promoter-TSS (NM_001303474)	-70	NM_138445	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
197031	chr6	53339801	53340000	+	0	NA	intron (NM_001242830, intron 1 of 6)	Tigger3b|DNA|TcMar-Tigger	-2283	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
229688	chr9	124629671	124629830	+	0	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	-28686	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
74999	chr15	63942551	63942850	+	0	NA	intron (NR_169522, intron 3 of 11)	L2c|LINE|L2	14426	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
136770	chr2	181441001	181441200	+	0	NA	Intergenic	Intergenic	-15792	NM_001316312	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
139573	chr2	224944601	224944950	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	2274	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
234952	chrX	38811601	38812350	+	0	NA	Intergenic	MER129|LTR?|LTR?	-8092	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
238012	chrX	134999501	134999780	+	0	NA	Intergenic	Intergenic	8649	NM_001163438	644538		NM_001163438	ENSG00000184785	SMIM10	CXorf69	small integral membrane protein 10	protein-coding
17712	chr1	158818671	158818830	+	0	NA	Intergenic	Intergenic	-12601	NM_002432	4332		NM_002432	ENSG00000163563	MNDA	PYHIN3	myeloid cell nuclear differentiation antigen	protein-coding
144451	chr20	35519301	35519900	+	0	NA	TTS (NM_007186)	TTS (NM_007186)	10052	NR_026933	140873		NM_080828	ENSG00000125975	C20orf173	dJ477O4.4	chromosome 20 open reading frame 173	protein-coding
170383	chr3	184785051	184785350	+	0	NA	Intergenic	Intergenic	-12045	NR_110043	101928992		NR_110043	ENSG00000229433	LINC02069	-	long intergenic non-protein coding RNA 2069	ncRNA
64739	chr14	34544901	34545300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1614	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
70127	chr14	100258351	100259180	+	0	NA	intron (NM_003403, intron 1 of 4)	MIR|SINE|MIR	-18592	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
167281	chr3	128625651	128625950	+	0	NA	intron (NM_002950, intron 7 of 9)	intron (NM_002950, intron 7 of 9)	25018	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
172085	chr4	1042951	1043350	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	30686	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
215229	chr7	156827901	156828300	+	0	NA	intron (NR_146958, intron 3 of 14)	intron (NR_146958, intron 3 of 14)	65083	NM_001363412	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
193859	chr6	31556101	31556600	+	0	NA	intron (NM_001144962, intron 2 of 3).3	intron (NM_001144962, intron 2 of 3).3	8742	NM_005007	4795		NM_005007	ENSG00000204498	NFKBIL1	IKBL|NFKBIL	NFKB inhibitor like 1	protein-coding
174814	chr4	48131521	48132080	+	0	NA	intron (NM_003328, intron 1 of 14)	L3b|LINE|CR1	2450	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
14233	chr1	143223021	143223500	+	0	NA	Intergenic	Intergenic	199332	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
89440	chr16	88967751	88967850	+	0	NA	intron (NM_005187, intron 1 of 11)	CpG	9407	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
183091	chr5	74575551	74576230	+	0	NA	Intergenic	Intergenic	-38914	NR_126354	104310351		NR_126354	ENSG00000248673	LINC01331	-	long intergenic non-protein coding RNA 1331	ncRNA
221269	chr8	122793751	122794250	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	12345	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
139240	chr2	219352001	219352780	+	0	NA	Intergenic	AluJr4|SINE|Alu	-19213	NM_001007089	389075		NM_001007089	ENSG00000182698	RESP18	-	regulated endocrine specific protein 18	protein-coding
234602	chrX	19797071	19798180	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	2148	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
7757	chr1	36171421	36171680	+	0	NA	exon (NM_018067, exon 3 of 17)	exon (NM_018067, exon 3 of 17)	15390	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
231082	chr9	129737571	129738530	+	0	NA	TTS (NM_004878)	TTS (NM_004878)	14992	NM_004878	9536		NM_004878	ENSG00000148344	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
56334	chr12	112933801	112934000	+	0	NA	TTS (NM_001320151)	TTS (NM_001320151)	-4574	NM_006187	4940		NM_006187	ENSG00000111331	OAS3	p100|p100OAS	2'-5'-oligoadenylate synthetase 3	protein-coding
103734	chr17	78866851	78867150	+	0	NA	intron (NM_003255, intron 3 of 4)	AluSx|SINE|Alu	-25561	NM_001385176	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
104254	chr17	80750221	80750680	+	0	NA	intron (NM_020761, intron 5 of 33)	intron (NM_020761, intron 5 of 33)	55182	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
160714	chr3	32416771	32417130	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	25097	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
15826	chr1	151326921	151328980	+	0	NA	promoter-TSS (NM_002651)	promoter-TSS (NM_002651)	-235	NM_001369623	5298		NM_002651	ENSG00000143393	PI4KB	DFNA87|NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIII|PI4KIIIBETA|PIK4CB	phosphatidylinositol 4-kinase beta	protein-coding
154450	chr22	35394751	35394850	+	0	NA	TTS (NM_002133)	TTS (NM_002133)	-5340	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
84844	chr16	31127751	31128050	+	0	NA	intron (NM_032188, intron 5 of 10)	intron (NM_032188, intron 5 of 10)	7827	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
93599	chr17	19133671	19134400	+	0	NA	intron (NM_001129778, intron 2 of 3)	intron (NM_001129778, intron 2 of 3)	6446	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
18803	chr1	167631751	167633100	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	2193	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
64568	chr14	24670621	24670980	+	0	NA	Intergenic	Tigger10|DNA|TcMar-Tigger	-36610	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
198766	chr6	108714351	108714850	+	0	NA	Intergenic	CR1-3_Croc|LINE|CR1	-37054	NR_033376	387111		NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
6015	chr1	27086501	27086950	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	68400	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
71277	chr14	105250951	105251800	+	0	NA	TTS (NM_033271)	TTS (NM_033271)	-1971	NM_001242789	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
127111	chr2	37644171	37644630	+	0	NA	3' UTR (NM_001270438, exon 2 of 2)	3' UTR (NM_001270438, exon 2 of 2)	27242	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
179118	chr4	168877771	168878700	+	0	NA	exon (NM_001166110, exon 2 of 12)	exon (NM_001166110, exon 2 of 12)	46140	NM_001367570	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
61073	chr13	48317571	48318000	+	0	NA	intron (NM_000321, intron 2 of 26)	intron (NM_000321, intron 2 of 26)	14034	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
204057	chr7	1974271	1974830	+	0	NA	intron (NM_001304524, intron 13 of 16)	HAL1|LINE|L1	-33979	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
138919	chr2	218168621	218169200	+	0	NA	Intergenic	Intergenic	-1948	NM_000634	3577		NM_000634	ENSG00000163464	CXCR1	C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA	C-X-C motif chemokine receptor 1	protein-coding
208917	chr7	74060451	74060550	+	0	NA	exon (NM_001278913, exon 21 of 29)	exon (NM_001278913, exon 21 of 29)	-23304	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
167000	chr3	125967421	125967880	+	0	NA	intron (NM_001385066, intron 1 of 6)	intron (NM_001385066, intron 1 of 6)	-1528	NM_001012337	152015		NM_001012337	ENSG00000114547	ROPN1B	-	rhophilin associated tail protein 1B	protein-coding
134059	chr2	131488701	131489300	+	0	NA	intron (NM_001085365, intron 2 of 2)	intron (NM_001085365, intron 2 of 2)	2236	NR_039945	100616378		NR_039945	ENSG00000284149	MIR4784	-	microRNA 4784	ncRNA
99081	chr17	48990101	48990580	+	0	NA	Intergenic	Intergenic	-7045	NM_006546	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
223248	chr8	143635521	143637130	+	0	NA	5' UTR (NM_001082480, exon 1 of 2)	5' UTR (NM_001082480, exon 1 of 2)	163	NM_001082480	9831		NM_014789	ENSG00000183309	ZNF623	-	zinc finger protein 623	protein-coding
168586	chr3	149042821	149043280	+	0	NA	intron (NM_001318934, intron 18 of 24)	L1M7|LINE|L1	-43282	NR_046648	100873945		NR_046648	ENSG00000239718	HLTF-AS1	-	HLTF antisense RNA 1	ncRNA
61286	chr13	50134371	50134530	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	-8909	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
161831	chr3	45659751	45660380	+	0	NA	intron (NM_014240, intron 2 of 7)	intron (NM_014240, intron 2 of 7)	28817	NR_033947	644714		NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
33369	chr10	117320001	117320350	+	0	NA	intron (NM_173791, intron 2 of 4)	intron (NM_173791, intron 2 of 4)	55265	NM_173791	118987		NM_173791	ENSG00000165650	PDZD8	IDDADF|PDZK8	PDZ domain containing 8	protein-coding
9201	chr1	45615971	45616380	+	0	NA	intron (NM_001195193, intron 9 of 12)	intron (NM_001195193, intron 9 of 12)	7879	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
160613	chr3	31464651	31464950	+	0	NA	Intergenic	Intergenic	-68125	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
224581	chr9	20198351	20198450	+	0	NA	Intergenic	Intergenic	212838	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
103633	chr17	78750071	78750580	+	0	NA	intron (NM_017456, intron 1 of 12)	L2|LINE|L2	-13423	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
161516	chr3	42590251	42592080	+	0	NA	intron (NM_016305, intron 2 of 3)	CpG	305	NM_001370300	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
128063	chr2	47811301	47811500	+	0	NA	intron (NM_001374325, intron 18 of 22)	AluSx1|SINE|Alu	27445	NM_001281494	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
26264	chr10	14723221	14723680	+	0	NA	intron (NM_001282695, intron 1 of 5)	intron (NM_001282695, intron 1 of 5)	51447	NM_001282695	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
196992	chr6	53293121	53293530	+	0	NA	TTS (NM_001242831)	TTS (NM_001242831)	16332	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
131989	chr2	100416951	100417730	+	0	NA	intron (NM_004854, intron 1 of 6)	CpG	328	NM_004854	9486		NM_004854	ENSG00000115526	CHST10	HNK-1ST|HNK1ST	carbohydrate sulfotransferase 10	protein-coding
114628	chr19	12987051	12987150	+	0	NA	Intergenic	Intergenic	-8375	NM_002501	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
201987	chr6	152299301	152299730	+	0	NA	intron (NM_033071, intron 92 of 145)	L2b|LINE|L2	-81015	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
9987	chr1	55060701	55061100	+	0	NA	intron (NM_174936, intron 10 of 11)	MIRb|SINE|MIR	20678	NR_110451	255738		NM_174936	ENSG00000169174	PCSK9	FH3|FHCL3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
220589	chr8	100900051	100900900	+	0	NA	Intergenic	Intergenic	50096	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
15051	chr1	148399371	148399830	+	0	NA	Intergenic	MLT2A2|LTR|ERVL	-2906	NR_168364	100132057		NR_033189	ENSG00000291232	PDE4DIPP6	-	PDE4DIP pseudogene 6	pseudo
11059	chr1	85050771	85051580	+	0	NA	Intergenic	AluSx|SINE|Alu	-2635	NM_001253693	55283		NM_018298	ENSG00000055732	MCOLN3	TRP-ML3|TRPML3	mucolipin TRP cation channel 3	protein-coding
126452	chr2	28267221	28267560	+	0	NA	intron (NM_199193, intron 11 of 13)	intron (NM_199193, intron 11 of 13)	43069	NR_038319	100505716		NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
182629	chr5	66840701	66841000	+	0	NA	intron (NM_015183, intron 1 of 27)	intron (NM_015183, intron 1 of 27)	12077	NM_015183	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
71757	chr15	21013301	21013500	+	0	NA	intron (NR_145444, intron 1 of 3)	intron (NR_145444, intron 1 of 3)	10123	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
164106	chr3	56674851	56674950	+	0	NA	intron (NM_001365638, intron 1 of 22)	AluY|SINE|Alu	8337	NM_001363940	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
33167	chr10	112948171	112948780	+	0	NA	Intergenic	Intergenic	-1772	NM_001146274	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
107657	chr18	48995921	48996250	+	0	NA	Intergenic	L2c|LINE|L2	-27618	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
169242	chr3	157148201	157148800	+	0	NA	exon (NM_020307, exon 11 of 11)	exon (NM_020307, exon 11 of 11)	11647	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
198284	chr6	99823701	99824100	+	0	NA	Intergenic	L1PA2|LINE|L1	-170138	NR_038384	728012		NR_038384	ENSG00000229315	MCHR2-AS1	-	MCHR2 antisense RNA 1	ncRNA
237659	chrX	124274501	124275130	+	0	NA	Intergenic	Intergenic	-57845	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
60594	chr13	41977871	41978030	+	0	NA	intron (NR_039974, intron 3 of 3)	L2|LINE|L2	16781	NR_039974	100507240		NR_039974	ENSG00000278338	VWA8-AS1	-	VWA8 antisense RNA 1 (head to head)	ncRNA
155856	chr22	39468401	39468800	+	0	NA	intron (NM_002409, intron 1 of 1)	intron (NM_002409, intron 1 of 1)	8222	NR_126469	104502417		NR_126469	ENSG00000227188	MGAT3-AS1	TapSAKI	MGAT3 antisense RNA 1	ncRNA
91376	chr17	4557551	4557650	+	0	NA	3' UTR (NM_001122890, exon 4 of 4)	3' UTR (NM_001122890, exon 4 of 4)	-2214	NM_001105538	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
218154	chr8	41896901	41897550	+	0	NA	promoter-TSS (NM_001142446)	promoter-TSS (NM_001142446)	-484	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
109459	chr19	789721	789980	+	0	NA	Intergenic	AluJb|SINE|Alu	-7602	NM_002819	5725		NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
202102	chr6	154732721	154733700	+	0	NA	promoter-TSS (NM_001286194)	promoter-TSS (NM_001286194)	-168	NM_001286189	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
239457	chrY	56718601	56718880	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-235515	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
220660	chr8	101132171	101132330	+	0	NA	Intergenic	Intergenic	37989	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
228101	chr9	96452371	96453130	+	0	NA	intron (NM_014282, intron 1 of 7)	intron (NM_014282, intron 1 of 7)	2581	NM_014282	22927		NM_014282	ENSG00000130956	HABP4	IHABP-4|IHABP4|Ki-1/57|SERBP1L	hyaluronan binding protein 4	protein-coding
94341	chr17	28856171	28856580	+	0	NA	exon (NM_005702, exon 2 of 10)	exon (NM_005702, exon 2 of 10)	1359	NR_134328	26284		NM_005702	ENSG00000132591	ERAL1	CEGA|ERA|ERA-W|ERAL1A|ERAL1B|H-ERA|HERA-A|HERA-B|PRLTS6	Era like 12S mitochondrial rRNA chaperone 1	protein-coding
120166	chr19	42246151	42246750	+	0	NA	Intergenic	Intergenic	-3848	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
171739	chr3	197981651	197982150	+	0	NA	intron (NM_001136049, intron 6 of 16)	AluSx|SINE|Alu	21683	NR_026787	89782		NM_033029	ENSG00000185621	LMLN	GP63|INV|IX14|LMNL1|MSP	leishmanolysin like peptidase	protein-coding
34242	chr10	130169371	130169930	+	0	NA	intron (NM_001199868, intron 7 of 11)	intron (NM_001199868, intron 7 of 11)	33241	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
68618	chr14	89640071	89640630	+	0	NA	Intergenic	L2a|LINE|L2	-21185	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
98899	chr17	48589271	48589780	+	0	NA	promoter-TSS (NR_110331)	promoter-TSS (NR_110331)	716	NM_001384750	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
13503	chr1	114738121	114738380	+	0	NA	intron (NM_001242891, intron 4 of 20)	MER5A|DNA|hAT-Charlie	19734	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
168978	chr3	152400871	152401300	+	0	NA	intron (NM_001314057, intron 3 of 11)	MER5B|DNA|hAT-Charlie	-60095	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
161337	chr3	40191871	40192180	+	0	NA	intron (NM_015460, intron 10 of 16)	intron (NM_015460, intron 10 of 16)	92014	NM_001284426	25924		NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
217028	chr8	23240901	23241600	+	0	NA	Intergenic	PABL_A-int|LTR|ERV1	-2387	NM_152272	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
16887	chr1	155853221	155853700	+	0	NA	exon (NM_032292, exon 2 of 21)	exon (NM_032292, exon 2 of 21)	3754	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
191214	chr6	5626751	5627390	+	0	NA	intron (NM_001374875, intron 6 of 6)	Tigger3b|DNA|TcMar-Tigger	68202	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
237909	chrX	131816571	131817330	+	0	NA	intron (NR_026975, intron 2 of 12)	intron (NR_026975, intron 2 of 12)	13693	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
229293	chr9	120839921	120840650	+	0	NA	intron (NM_005047, intron 1 of 9)	AluJb|SINE|Alu	2637	NM_001270427	5711		NM_005047	ENSG00000095261	PSMD5	S5B	proteasome 26S subunit, non-ATPase 5	protein-coding
107907	chr18	57435051	57436050	+	0	NA	5' UTR (NM_004852, exon 1 of 2)	5' UTR (NM_004852, exon 1 of 2)	176	NM_004852	9480		NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
130051	chr2	74439221	74439580	+	0	NA	intron (NM_001015055, intron 1 of 11)	intron (NM_001015055, intron 1 of 11)	1183	NM_033046	6242		NM_033046	ENSG00000114993	RTKN	RTKN-1	rhotekin	protein-coding
38065	chr11	35183371	35184500	+	0	NA	intron (NM_001202557, intron 3 of 8)	intron (NM_001202557, intron 3 of 8)	20985	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
82469	chr16	17106271	17106430	+	0	NA	3' UTR (NM_022166, exon 12 of 12)	3' UTR (NM_022166, exon 12 of 12)	-28154	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
213615	chr7	139434401	139434800	+	0	NA	Intergenic	Intergenic	-7074	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
192261	chr6	20335901	20336400	+	0	NA	Intergenic	MIRc|SINE|MIR	-65729	NM_001949	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
52029	chr12	53998421	53998800	+	0	NA	TTS (NR_047504)	TTS (NR_047504)	1400	NR_047504	100874363		NR_047504	ENSG00000250451	HOXC-AS1	-	HOXC cluster antisense RNA 1	ncRNA
154044	chr22	30574421	30575130	+	0	NA	promoter-TSS (NM_001318103)	promoter-TSS (NM_001318103)	-110	NM_001318104	9514		NM_004861	ENSG00000128242	GAL3ST1	CST	galactose-3-O-sulfotransferase 1	protein-coding
185919	chr5	132831351	132831450	+	0	NA	promoter-TSS (NM_001172700)	promoter-TSS (NM_001172700)	-753	NM_001172700	134549		NM_133456	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
198330	chr6	102088651	102088750	+	0	NA	Intergenic	L1PA3|LINE|L1	689715	NM_001166247	2898		NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6|NEDLAS	glutamate ionotropic receptor kainate type subunit 2	protein-coding
6172	chr1	27428351	27429230	+	0	NA	exon (NM_001201404, exon 2 of 8)	exon (NM_001201404, exon 2 of 8)	36168	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
213488	chr7	139050601	139051000	+	0	NA	intron (NM_020119, intron 12 of 12)	intron (NM_020119, intron 12 of 12)	-6643	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
38090	chr11	35206471	35207200	+	0	NA	intron (NM_001001389, intron 10 of 16)	intron (NM_001001389, intron 10 of 16)	43885	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
140459	chr2	233167401	233167950	+	0	NA	intron (NM_001017915, intron 13 of 26).2	intron (NM_001017915, intron 13 of 26).2	-83896	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
137002	chr2	190635801	190636030	+	0	NA	Intergenic	AluJo|SINE|Alu	-12980	NM_001321313	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
21372	chr1	205142971	205143130	+	0	NA	3' UTR (NM_199462, exon 12 of 12)	3' UTR (NM_199462, exon 12 of 12)	-21072	NM_001193272	5929		NM_005057	ENSG00000117222	RBBP5	RBQ3|SWD1	RB binding protein 5, histone lysine methyltransferase complex subunit	protein-coding
181071	chr5	36696071	36696400	+	0	NA	Intergenic	Intergenic	89629	NM_004172	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
119870	chr19	41447871	41448550	+	0	NA	Intergenic	L1M4|LINE|L1	5054	NM_001130514	100170765		NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
96943	chr17	42179921	42180430	+	0	NA	intron (NM_012285, intron 1 of 16)	intron (NM_012285, intron 1 of 16)	967	NM_012285	23415		NM_012285	ENSG00000089558	KCNH4	BEC2|ELK1|Kv12.3	potassium voltage-gated channel subfamily H member 4	protein-coding
178637	chr4	152281671	152282030	+	0	NA	Intergenic	Intergenic	-55824	NR_104273	102191832		NR_104273	ENSG00000270751	FBXW7-AS1	DEAR|DEspR	FBXW7 antisense RNA 1	ncRNA
119345	chr19	39975901	39976100	+	0	NA	intron (NM_006503, intron 6 of 10)	AluYc|SINE|Alu	4835	NM_006503	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
21901	chr1	207817271	207817430	+	0	NA	non-coding (NR_135298, exon 2 of 5)	non-coding (NR_135298, exon 2 of 5)	-1029	NR_026817	148696		NM_001039568		LOC148696	-	uncharacterized LOC148696	ncRNA
70329	chr14	101838421	101838730	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	28712	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
25909	chr10	11300071	11300650	+	0	NA	intron (NM_001326330, intron 9 of 12)	intron (NM_001326330, intron 9 of 12)	44314	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
86551	chr16	67190371	67190900	+	0	NA	promoter-TSS (NM_178516)	promoter-TSS (NM_178516)	-499	NM_178516	283849		NM_178516	ENSG00000179044	EXOC3L1	EXOC3L	exocyst complex component 3 like 1	protein-coding
196485	chr6	43625421	43625680	+	0	NA	exon (NM_001286216, exon 5 of 12)	exon (NM_001286216, exon 5 of 12)	1803	NM_001286216	54676		NM_019096	ENSG00000172432	GTPBP2	JABELS	GTP binding protein 2	protein-coding
105575	chr18	107201	108590	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-1170	NR_033770	727758		NR_033770	ENSG00000290877	ROCK1P1	ROCK1P	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
125484	chr2	12488121	12489130	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-228247	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
122813	chr19	50385571	50385930	+	0	NA	intron (NR_046402, intron 1 of 25)	AluSx1|SINE|Alu	1403	NR_046402	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
22084	chr1	211407771	211407950	+	0	NA	intron (NR_026761, intron 4 of 5)	L1PA5|LINE|L1	25105	NR_026761	84791		NM_032705	ENSG00000153363	LINC00467	ASAP|C1orf97	long intergenic non-protein coding RNA 467	ncRNA
53172	chr12	58920551	58920650	+	0	NA	promoter-TSS (NM_153377)	promoter-TSS (NM_153377)	-96	NM_153377	121227		NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding
171951	chr4	892551	892650	+	0	NA	intron (NM_001318134, intron 6 of 24)	intron (NM_001318134, intron 6 of 24)	39716	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
234420	chrX	16802751	16803850	+	0	NA	intron (NM_001168683, intron 1 of 7)	intron (NM_001168683, intron 1 of 7)	16834	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
220948	chr8	109325671	109326380	+	0	NA	intron (NM_032869, intron 1 of 9)	intron (NM_032869, intron 1 of 9)	3908	NM_001128211	84955		NM_032869	ENSG00000120526	NUDCD1	CML66|OVA66	NudC domain containing 1	protein-coding
2024	chr1	7649171	7649330	+	0	NA	intron (NM_001349608, intron 6 of 21)	intron (NM_001349608, intron 6 of 21)	-20480	NM_001349614	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
41918	chr11	67284021	67284450	+	0	NA	exon (NM_001619, exon 18 of 21)	exon (NM_001619, exon 18 of 21)	-5068	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
65809	chr14	54803271	54803800	+	0	NA	Intergenic	LTR32|LTR|ERVL	48702	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
61801	chr13	75489421	75490120	+	0	NA	Intergenic	Intergenic	-7601	NM_014832	9882		NM_014832	ENSG00000136111	TBC1D4	AS160|NIDDM5	TBC1 domain family member 4	protein-coding
61495	chr13	52616811	52618530	+	0	NA	5' UTR (NM_001011724, exon 1 of 7)	5' UTR (NM_001011724, exon 1 of 7)	145	NM_001011725	144983		NM_001011724	ENSG00000139675	HNRNPA1L2	-	heterogeneous nuclear ribonucleoprotein A1 like 2	protein-coding
154922	chr22	37206121	37207280	+	0	NA	exon (NM_001278687, exon 2 of 2)	exon (NM_001278687, exon 2 of 2)	3989	NM_001278687	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
142455	chr20	4014681	4016400	+	0	NA	promoter-TSS (NM_001134338)	promoter-TSS (NM_001134338)	18	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
196618	chr6	44255821	44256700	+	0	NA	intron (NM_001286519, intron 1 of 1)	intron (NM_001286519, intron 1 of 1)	1028	NM_001286510	347734		NM_178148	ENSG00000157593	SLC35B2	HLD26|PAPST1|SLL|UGTrel4	solute carrier family 35 member B2	protein-coding
146048	chr20	47357501	47358330	+	0	NA	Intergenic	Intergenic	-1026	NM_001281769	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
148724	chr21	7044151	7044450	+	0	NA	Intergenic	Intergenic	-4559	NM_001322036	102724951		NM_001322036	ENSG00000276077	LINC03105	-	long intergenic non-protein coding RNA 3105	ncRNA
31237	chr10	91887201	91887830	+	0	NA	Intergenic	CpG	21971	NM_152429	143282		NM_152429	ENSG00000174721	FGFBP3	C10orf13|FGF-BP3	fibroblast growth factor binding protein 3	protein-coding
61108	chr13	48486301	48486500	+	0	NA	Intergenic	Intergenic	-41731	NM_005767	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
163682	chr3	52241921	52242180	+	0	NA	TTS (NR_135307)	TTS (NR_135307)	2812	NR_135307	101929054		NR_135307	ENSG00000243224	TWF2-DT	-	TWF2 divergent transcript	ncRNA
1358	chr1	2501371	2502130	+	0	NA	intron (NM_001303013, intron 20 of 21)	intron (NM_001303013, intron 20 of 21)	24846	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
171601	chr3	197292171	197292580	+	0	NA	intron (NM_001204386, intron 3 of 24)	L1MB2|LINE|L1	1573	NR_039960	100616216		NR_039960	ENSG00000265850	MIR4797	-	microRNA 4797	ncRNA
174081	chr4	27049301	27049530	+	0	NA	Intergenic	Intergenic	-168064	NR_125921	101929199		NR_125921	ENSG00000249699	LINC02261	-	long intergenic non-protein coding RNA 2261	ncRNA
61460	chr13	52160521	52160780	+	0	NA	promoter-TSS (NR_027415)	promoter-TSS (NR_027415)	-789	NM_001146099	4752		NM_002498	ENSG00000136098	NEK3	HSPK36	NIMA related kinase 3	protein-coding
202474	chr6	158238871	158239030	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	70600	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
166772	chr3	122415051	122417130	+	0	NA	promoter-TSS (NR_125405)	promoter-TSS (NR_125405)	-28	NM_019069	54554		NM_019069	ENSG00000196981	WDR5B	-	WD repeat domain 5B	protein-coding
171865	chr4	746371	747200	+	0	NA	intron (NM_001317836, intron 9 of 11)	CpG	35063	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
222585	chr8	140790651	140792030	+	0	NA	intron (NR_148036, intron 13 of 34)	FAM|SINE|Alu	-58687	NR_029892	442893		NR_029892	ENSG00000254324	MIR151A	MIR151|MIRN151|hsa-mir-151|hsa-mir-151a	microRNA 151a	ncRNA
180625	chr5	16628071	16628230	+	0	NA	intron (NR_109946, intron 3 of 3)	AluJb|SINE|Alu	-11092	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
46432	chr11	128035251	128036680	+	0	NA	Intergenic	L2a|LINE|L2	-172801	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
224306	chr9	6585121	6585400	+	0	NA	intron (NM_000170, intron 15 of 24)	intron (NM_000170, intron 15 of 24)	60469	NM_000170	2731		NM_000170	ENSG00000178445	GLDC	GCE|GCE1|GCSP|HYGN1	glycine decarboxylase	protein-coding
230732	chr9	128824921	128825480	+	0	NA	intron (NM_016390, intron 7 of 11)	intron (NM_016390, intron 7 of 11)	4594	NM_016390	51490		NM_016390	ENSG00000198917	SPOUT1	C9orf114|CENP-32|CENP32|HSPC109	SPOUT domain containing methyltransferase 1	protein-coding
87759	chr16	75250751	75252250	+	0	NA	5' UTR (NM_001170717, exon 1 of 7)	5' UTR (NM_001170717, exon 1 of 7)	124	NM_014567	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
173312	chr4	7326871	7327030	+	0	NA	intron (NM_020777, intron 1 of 26)	intron (NM_020777, intron 1 of 26)	16500	NR_039961	100616471		NR_039961	ENSG00000264658	MIR4798	-	microRNA 4798	ncRNA
121705	chr19	47582471	47583180	+	0	NA	Intergenic	L1MC5|LINE|L1	-9677	NM_001277075	84215		NM_032255	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
44716	chr11	111631251	111631750	+	0	NA	intron (NM_015191, intron 3 of 14)	intron (NM_015191, intron 3 of 14)	29051	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
105462	chr17	83050951	83052650	+	0	NA	promoter-TSS (NM_001320742)	promoter-TSS (NM_001320742)	10	NM_001009905	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
3753	chr1	16659921	16660630	+	0	NA	Intergenic	AluJb|SINE|Alu	6673	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
93825	chr17	20841801	20842000	+	0	NA	Intergenic	Intergenic	-26627	NR_160710	440416		NR_104185	ENSG00000233098	CCDC144NL-AS1	-	CCDC144NL antisense RNA 1	ncRNA
120198	chr19	42282201	42286080	+	0	NA	promoter-TSS (NM_015125)	promoter-TSS (NM_015125)	-329	NM_001379484	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
135874	chr2	170974951	170975350	+	0	NA	Intergenic	MIR3|SINE|MIR	45897	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
14315	chr1	143868001	143868200	+	0	NA	intron (NR_160915, intron 1 of 1)	MER41B|LTR|ERV1	-6643	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
174200	chr4	37389971	37390170	+	0	NA	intron (NM_001144990, intron 3 of 6)	AluSx1|SINE|Alu	-63855	NM_001104629	55286		NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
168034	chr3	136907751	136908050	+	0	NA	intron (NM_001291999, intron 1 of 3)	intron (NM_001291999, intron 1 of 3)	-22602	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
18071	chr1	160646351	160646450	+	0	NA	intron (NR_104400, intron 1 of 4)	intron (NR_104400, intron 1 of 4)	644	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
116171	chr19	17408671	17408830	+	0	NA	intron (NR_130765, intron 3 of 4)	(AT)n|Simple_repeat|Simple_repeat	3009	NM_001304547	93343		NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
221137	chr8	118564001	118564600	+	0	NA	intron (NM_207506, intron 2 of 3)	intron (NM_207506, intron 2 of 3)	-56701	NR_038210	552860		NR_038210		SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA
59345	chr13	24599321	24599930	+	0	NA	Intergenic	Intergenic	19417	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
136123	chr2	173953551	173953650	+	0	NA	intron (NM_001172712, intron 4 of 6)	AluSz|SINE|Alu	10280	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
148623	chr21	5601551	5602300	+	0	NA	Intergenic	Intergenic	32721	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
52197	chr12	54358671	54360000	+	0	NA	intron (NR_120487, intron 1 of 3)	intron (NR_120487, intron 1 of 3)	5151	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
168301	chr3	141540821	141541350	+	0	NA	intron (NM_006506, intron 5 of 23)	L2|LINE|L2	54058	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
46254	chr11	124748521	124749180	+	0	NA	intron (NM_014312, intron 4 of 6)	MIRb|SINE|MIR	3405	NM_001329920	23584		NM_014312	ENSG00000019102	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
232862	chr9	136800931	136801650	+	0	NA	intron (NM_001039374, intron 5 of 13)	intron (NM_001039374, intron 5 of 13)	4952	NM_001039374	84960		NM_032874	ENSG00000213213	CCDC183	KIAA1984|PARF|bA216L13.7	coiled-coil domain containing 183	protein-coding
61592	chr13	72784921	72785180	+	0	NA	intron (NM_006346, intron 2 of 17)	MLT1A0|LTR|ERVL-MaLR	2917	NR_146206	10464		NM_006346	ENSG00000083535	PIBF1	C13orf24|CEP90|JBTS33|PIBF	progesterone immunomodulatory binding factor 1	protein-coding
36384	chr11	3991301	3991580	+	0	NA	intron (NM_001382568, intron 2 of 11)	AluJo|SINE|Alu	-103245	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
188247	chr5	151058451	151058750	+	0	NA	intron (NM_006058, intron 5 of 17)	intron (NM_006058, intron 5 of 17)	6531	NM_001258455	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
172210	chr4	1295321	1296350	+	0	NA	intron (NR_123716, intron 1 of 6)	intron (NR_123716, intron 1 of 6)	5944	NM_001297431	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
45149	chr11	117200871	117201230	+	0	NA	intron (NR_045215, intron 1 of 7)	intron (NR_045215, intron 1 of 7)	864	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
41141	chr11	65586721	65587100	+	0	NA	intron (NM_001099409, intron 12 of 18)	intron (NM_001099409, intron 12 of 18)	8890	NM_033347	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
62196	chr13	97855621	97855700	+	0	NA	Intergenic	Intergenic	-98015	NM_002271	3843		NM_002271	ENSG00000065150	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding
235450	chrX	46463701	46463920	+	0	NA	intron (NM_001129898, intron 5 of 5)	(TGTT)n|Simple_repeat|Simple_repeat	16513	NM_001129898	55634		NM_017776	ENSG00000147121	KRBOX4	ZNF673	KRAB box domain containing 4	protein-coding
127105	chr2	37635171	37636350	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	35882	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
44176	chr11	96244801	96245200	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-96438	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
232998	chr9	137001721	137001980	+	0	NA	Intergenic	AluYm1|SINE|Alu	-5282	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
20	chr1	34701	35080	+	0	NA	non-coding (NR_026818, exon 3 of 3)	non-coding (NR_026818, exon 3 of 3)	1191	NR_026822	654835		NR_026822	ENSG00000218839	FAM138C	F379	family with sequence similarity 138 member C	ncRNA
133706	chr2	127353301	127353500	+	0	NA	intron (NM_001371911, intron 1 of 16)	SVA_D|Retroposon|SVA	-10171	NM_006609	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
23289	chr1	228057771	228057930	+	0	NA	intron (NM_033131, intron 3 of 3)	AluSz6|SINE|Alu	18700	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
155602	chr22	38792601	38793050	+	0	NA	intron (NM_005740, intron 1 of 3)	Tigger3b|DNA|TcMar-Tigger	1318	NM_005740	10126		NM_005740	ENSG00000100246	DNAL4	MRMV3|PIG27	dynein axonemal light chain 4	protein-coding
188323	chr5	151218001	151218700	+	0	NA	intron (NR_160730, intron 2 of 3)	intron (NR_160730, intron 2 of 3)	5742	NM_015621	26112		NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
174664	chr4	41216051	41216750	+	0	NA	Intergenic	(GCG)n|Simple_repeat|Simple_repeat	-1858	NM_173075	323		NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
222316	chr8	133499201	133499700	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	72437	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
41848	chr11	67126971	67127330	+	0	NA	intron (NM_012308, intron 2 of 20)	AluJr|SINE|Alu	7887	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
140325	chr2	232525851	232526150	+	0	NA	promoter-TSS (NM_001311196)	promoter-TSS (NM_001311196)	-160	NM_001256657	1144		NM_000751	ENSG00000135902	CHRND	ACHRD|CMS2A|CMS3A|CMS3B|CMS3C|FCCMS|SCCMS	cholinergic receptor nicotinic delta subunit	protein-coding
162634	chr3	48808401	48808930	+	0	NA	intron (NM_004157, intron 1 of 10)	AluSz|SINE|Alu	39209	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
102850	chr17	76484601	76485000	+	0	NA	intron (NR_164787, intron 2 of 18)	L2|LINE|L2	16623	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
29062	chr10	67882251	67882350	+	0	NA	Intergenic	Intergenic	-2356	NM_012238	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
207048	chr7	39606301	39606700	+	0	NA	intron (NM_001282446, intron 2 of 2)	intron (NM_001282446, intron 2 of 2)	-17072	NM_005402	5898		NM_005402	ENSG00000006451	RALA	HINCONS|RAL	RAS like proto-oncogene A	protein-coding
10549	chr1	67013651	67013750	+	0	NA	intron (NM_015139, intron 10 of 11)	LTR49-int|LTR|ERV1	40448	NM_015139	23169		NM_015139	ENSG00000116704	SLC35D1	SHNKND|UGTREL7	solute carrier family 35 member D1	protein-coding
155952	chr22	39689801	39690200	+	0	NA	TTS (NM_021096)	TTS (NM_021096)	119247	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
227737	chr9	93063751	93066300	+	0	NA	intron (NM_001287007, intron 1 of 2)	intron (NM_001287007, intron 1 of 2)	6324	NM_001287007	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
142023	chr20	1659271	1659650	+	0	NA	Intergenic	Intergenic	-1681	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
23938	chr1	235106651	235106980	+	0	NA	Intergenic	AluSx3|SINE|Alu	21122	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
15763	chr1	151161651	151162400	+	0	NA	exon (NM_001136543, exon 2 of 3)	exon (NM_001136543, exon 2 of 3)	3877	NM_001136543	388695		NM_212551	ENSG00000163155	LYSMD1	SB145	LysM domain containing 1	protein-coding
144988	chr20	37383301	37383500	+	0	NA	intron (NM_198291, intron 3 of 13)	intron (NM_198291, intron 3 of 13)	37260	NM_198291	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
73182	chr15	41498601	41498800	+	0	NA	intron (NM_002220, intron 1 of 6)	intron (NM_002220, intron 1 of 6)	4826	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
14488	chr1	144541151	144541250	+	0	NA	Intergenic	L1MEc|LINE|L1	10743	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
53712	chr12	68598821	68599680	+	0	NA	Intergenic	Intergenic	-11649	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
163557	chr3	51720451	51720750	+	0	NA	Intergenic	Intergenic	13532	NM_001349117	2912		NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate metabotropic receptor 2	protein-coding
176941	chr4	103008901	103009350	+	0	NA	intron (NR_047513, intron 1 of 10)	MIR3|SINE|MIR	10580	NR_047515	150159		NM_139173	ENSG00000164037	SLC9B1	NHA1|NHEDC1	solute carrier family 9 member B1	protein-coding
61261	chr13	50072771	50073130	+	0	NA	intron (NR_152566, intron 2 of 13)	intron (NR_152566, intron 2 of 13)	9091	NR_152568	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
65269	chr14	49980501	49980700	+	0	NA	Intergenic	Intergenic	12534	NR_126499	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
46535	chr11	128463751	128463850	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	58510	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
160863	chr3	33372701	33373130	+	0	NA	intron (NR_146130, intron 6 of 15)	MER5A1|DNA|hAT-Charlie	67463	NM_001128160	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
115877	chr19	16568871	16569280	+	0	NA	intron (NM_024881, intron 2 of 5)	AluSc|SINE|Alu	3340	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
109325	chr19	591521	592100	+	0	NA	intron (NM_001194, intron 1 of 7)	intron (NM_001194, intron 1 of 7)	1929	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
124803	chr2	7499021	7499280	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	77889	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
99066	chr17	48942601	48942800	+	0	NA	intron (NM_001317193, intron 1 of 6)	intron (NM_001317193, intron 1 of 6)	2142	NR_133679	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
132148	chr2	101733521	101733780	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	35385	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
195943	chr6	41928001	41928200	+	0	NA	intron (NM_004053, intron 2 of 6)	MER20|DNA|hAT-Charlie	6601	NM_004053	705		NM_004053	ENSG00000112578	BYSL	BYSTIN|Enp1	bystin like	protein-coding
87601	chr16	74298571	74298730	+	0	NA	intron (NM_002811, intron 1 of 6)	AluJb|SINE|Alu	1836	NM_002811	5713		NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	proteasome 26S subunit, non-ATPase 7	protein-coding
141058	chr2	238255771	238255930	+	0	NA	exon (NM_022817, exon 18 of 23)	exon (NM_022817, exon 18 of 23)	-15812	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
28648	chr10	59882151	59883130	+	0	NA	intron (NM_005436, intron 1 of 8)	intron (NM_005436, intron 1 of 8)	23916	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
20374	chr1	198047971	198048190	+	0	NA	Intergenic	Intergenic	-108918	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
162733	chr3	49032821	49033080	+	0	NA	intron (NM_001320580, intron 8 of 10)	intron (NM_001320580, intron 8 of 10)	-3552	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
95414	chr17	36081621	36083120	+	0	NA	Intergenic	Intergenic	7328	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
174763	chr4	47510221	47510800	+	0	NA	intron (NM_020453, intron 1 of 22)	intron (NM_020453, intron 1 of 22)	25235	NM_020453	57205		NM_020453	ENSG00000145246	ATP10D	ATPVD	ATPase phospholipid transporting 10D (putative)	protein-coding
112479	chr19	6415121	6415780	+	0	NA	TTS (NR_037505)	TTS (NR_037505)	1061	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
74493	chr15	60006221	60007050	+	0	NA	3' UTR (NM_012182, exon 2 of 2)	3' UTR (NM_012182, exon 2 of 2)	2324	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
120007	chr19	41932151	41932450	+	0	NA	Intergenic	L2c|LINE|L2	3480	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
154826	chr22	37059621	37060400	+	0	NA	intron (NM_001282686, intron 5 of 5)	intron (NM_001282686, intron 5 of 5)	8274	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
153973	chr22	30370271	30370630	+	0	NA	exon (NM_001318334, exon 5 of 12)	exon (NM_001318334, exon 5 of 12)	7455	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
219454	chr8	73063201	73064100	+	0	NA	TTS (NM_153225)	TTS (NM_153225)	29522	NM_153225	157869		NM_153225	ENSG00000164764	SBSPON	C8orf84|RPESP	somatomedin B and thrombospondin type 1 domain containing	protein-coding
108159	chr18	62714671	62716500	+	0	NA	promoter-TSS (NM_194449)	promoter-TSS (NM_194449)	44	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
30457	chr10	79104551	79105050	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	35834	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
229401	chr9	121192871	121193600	+	0	NA	intron (NM_016322, intron 2 of 7)	intron (NM_016322, intron 2 of 7)	-8248	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
238157	chrX	136780801	136781900	+	0	NA	promoter-TSS (NM_004840)	promoter-TSS (NM_004840)	-418	NM_004840	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
13921	chr1	120100601	120100800	+	0	NA	Intergenic	Intergenic	-30997	NM_001200001	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
75607	chr15	67116151	67116250	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	-9516	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
34035	chr10	124726021	124726280	+	0	NA	intron (NM_014661, intron 1 of 4)	MER5A|DNA|hAT-Charlie	18228	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
93747	chr17	19874101	19874300	+	0	NA	Intergenic	Intergenic	-6264	NM_001142610	9706		NM_014683	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
92123	chr17	7611621	7612080	+	0	NA	intron (NM_004860, intron 1 of 16)	intron (NM_004860, intron 1 of 16)	-2214	NM_001289114	6462		NM_001040	ENSG00000129214	SHBG	ABP|SBP|TEBG	sex hormone binding globulin	protein-coding
81343	chr16	4775021	4775280	+	0	NA	Intergenic	Intergenic	-7988	NM_001303450	26048		NM_021646	ENSG00000103199	ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
172037	chr4	1000901	1001550	+	0	NA	intron (NM_001363576, intron 3 of 12)	intron (NM_001363576, intron 3 of 12)	1515	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
217202	chr8	26332151	26332450	+	0	NA	intron (NM_002717, intron 2 of 9)	AluSz|SINE|Alu	39084	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
127564	chr2	42494701	42495530	+	0	NA	intron (NM_001282755, intron 1 of 17)	intron (NM_001282755, intron 1 of 17)	546	NM_001282755	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
122286	chr19	49083901	49084100	+	0	NA	Intergenic	AluSp|SINE|Alu	-1451	NM_003089	6625		NM_003089	ENSG00000104852	SNRNP70	RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP	small nuclear ribonucleoprotein U1 subunit 70	protein-coding
110475	chr19	2023771	2024550	+	0	NA	Intergenic	AluY|SINE|Alu	-8446	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
164067	chr3	53887251	53887980	+	0	NA	intron (NM_021237, intron 2 of 4)	intron (NM_021237, intron 2 of 4)	4244	NM_021237	58515		NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
156984	chr22	42498271	42498930	+	0	NA	Intergenic	MER11D|LTR|ERVK	-1979	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
188029	chr5	149651861	149652600	+	0	NA	Intergenic	Intergenic	70732	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
159969	chr3	17740621	17741130	+	0	NA	promoter-TSS (NM_014744)	promoter-TSS (NM_014744)	32	NM_014744	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
96813	chr17	41930211	41931480	+	0	NA	intron (NM_031421, intron 1 of 11)	CpG	228	NR_110662	83538		NM_031421	ENSG00000204815	ODAD4	TTC25	outer dynein arm docking complex subunit 4	protein-coding
92788	chr17	15897471	15898130	+	0	NA	Intergenic	L1ME3G|LINE|L1	-47117	NM_000676	136		NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
6021	chr1	27100521	27100780	+	0	NA	intron (NR_046474, intron 10 of 10)	intron (NR_046474, intron 10 of 10)	54475	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
53224	chr12	62291971	62292700	+	0	NA	intron (NM_001351164, intron 1 of 21)	L1PA15-16|LINE|L1	31931	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
27057	chr10	27144071	27144230	+	0	NA	intron (NM_139312, intron 4 of 19)	intron (NM_139312, intron 4 of 19)	10234	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
204112	chr7	2243601	2244200	+	0	NA	intron (NM_198954, intron 1 of 3)	intron (NM_198954, intron 1 of 3)	995	NM_198954	4521		NM_002452	ENSG00000106268	NUDT1	MTH1	nudix hydrolase 1	protein-coding
121442	chr19	47034301	47034580	+	0	NA	promoter-TSS (NM_001321086)	promoter-TSS (NM_001321086)	-877	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
3996	chr1	18918051	18918750	+	0	NA	exon (NM_001136265, exon 4 of 9)	exon (NM_001136265, exon 4 of 9)	-15601	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
144549	chr20	35729621	35730350	+	0	NA	intron (NM_184234, intron 4 of 16)	L1ME3G|LINE|L1	12275	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
190181	chr5	178194051	178194780	+	0	NA	Intergenic	Intergenic	-7044	NM_001358008	64396		NM_001358008	ENSG00000244234	GMCL2	GCL|GMCL1L|GMCL1P1	germ cell-less 2, spermatogenesis associated	protein-coding
201935	chr6	151449871	151450380	+	0	NA	intron (NM_017909, intron 1 of 11)	SVA_D|Retroposon|SVA	2001	NM_017909	55005		NM_017909	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog	protein-coding
232966	chr9	136963571	136963730	+	0	NA	Intergenic	L3|LINE|CR1	-5762	NR_157392	101928638		NM_001101674		LINC02692	C9orf141|PRR31	long intergenic non-protein coding RNA 2692	ncRNA
63838	chr14	21508021	21508380	+	0	NA	intron (NM_019852, intron 1 of 10)	AluJo|SINE|Alu	3140	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
62358	chr13	99208771	99208930	+	0	NA	intron (NR_026644, intron 1 of 8)	LTR78|LTR|ERV1	7996	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
142329	chr20	3674651	3674950	+	0	NA	exon (NM_001282447, exon 5 of 22)	exon (NM_001282447, exon 5 of 22)	7210	NM_001282447	80332		NM_025220	ENSG00000149451	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
220204	chr8	96154201	96154400	+	0	NA	intron (NM_001001557, intron 1 of 1)	intron (NM_001001557, intron 1 of 1)	6506	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
210251	chr7	99390801	99391530	+	0	NA	intron (NM_005720, intron 6 of 9)	intron (NM_005720, intron 6 of 9)	16435	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
107582	chr18	48844001	48844200	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	98707	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
89958	chr16	89767471	89767830	+	0	NA	intron (NM_001286167, intron 26 of 42)	AluSc8|SINE|Alu	46113	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
137228	chr2	191624821	191625650	+	0	NA	Intergenic	Intergenic	-52837	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
21523	chr1	205807351	205807930	+	0	NA	intron (NM_173854, intron 2 of 10)	intron (NM_173854, intron 2 of 10)	5558	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
30935	chr10	87310551	87310650	+	0	NA	intron (NR_024397, intron 3 of 5)	(AT)n|Simple_repeat|Simple_repeat	-31811	NR_029408	439994		NR_029408	ENSG00000224914	LINC00863	-	long intergenic non-protein coding RNA 863	ncRNA
110562	chr19	2115571	2115930	+	0	NA	intron (NM_001374799, intron 18 of 31)	CpG-13151	18835	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
63131	chr13	113445651	113446180	+	0	NA	intron (NM_138430, intron 1 of 6)	intron (NM_138430, intron 1 of 6)	3243	NM_199162	113622		NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
205276	chr7	8261551	8262350	+	0	NA	promoter-TSS (NR_125740)	promoter-TSS (NR_125740)	217	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
86976	chr16	68163401	68163600	+	0	NA	intron (NM_173165, intron 4 of 9)	SVA_D|Retroposon|SVA	69999	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
198509	chr6	106513871	106514700	+	0	NA	intron (NM_001371242, intron 3 of 21)	intron (NM_001371242, intron 3 of 21)	2430	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
162116	chr3	46928121	46928850	+	0	NA	intron (NM_144716, intron 3 of 7)	MADE1|DNA|TcMar-Mariner	46236	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
177139	chr4	108118421	108118980	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	48097	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
112446	chr19	6374481	6374930	+	0	NA	TTS (NM_004158)	TTS (NM_004158)	1211	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
150540	chr21	42989871	42990430	+	0	NA	intron (NM_001320694, intron 1 of 10)	AluSx|SINE|Alu	15588	NM_004571	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
84914	chr16	31222871	31223700	+	0	NA	intron (NM_001008274, intron 6 of 6)	intron (NM_001008274, intron 6 of 6)	-6150	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
49544	chr12	26696621	26696880	+	0	NA	intron (NM_002223, intron 9 of 56)	intron (NM_002223, intron 9 of 56)	136444	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
214259	chr7	148945301	148945880	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	4102	NR_001571	6090		NR_001571		RNY5	Y5|hY5	RNA, Ro60-associated Y5	ncRNA
2548	chr1	9732171	9732330	+	0	NA	intron (NM_014944, intron 15 of 17)	AluJb|SINE|Alu	40783	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
213739	chr7	140396751	140397050	+	0	NA	intron (NM_032295, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	1630	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
19696	chr1	181043771	181043950	+	0	NA	intron (NM_001310213, intron 3 of 6)	intron (NM_001310213, intron 3 of 6)	9877	NM_001385162	3140		NM_001531	ENSG00000153029	MR1	HLALS	major histocompatibility complex, class I-related	protein-coding
161385	chr3	41200831	41201400	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	1610	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
145421	chr20	43455671	43456030	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2046	NR_034009	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
196868	chr6	49550451	49550800	+	0	NA	promoter-TSS (NM_001145652)	promoter-TSS (NM_001145652)	-43	NR_146860	135398		NM_153344	ENSG00000197261	C6orf141	-	chromosome 6 open reading frame 141	protein-coding
51287	chr12	51236221	51236480	+	0	NA	Intergenic	L2b|LINE|L2	-2374	NM_001136264	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
117832	chr19	31213721	31214780	+	0	NA	intron (NR_138036, intron 2 of 4)	intron (NR_138036, intron 2 of 4)	46740	NR_147209	107985312		NR_147209	ENSG00000267777	LINC01791	-	long intergenic non-protein coding RNA 1791	ncRNA
235922	chrX	53091301	53092130	+	0	NA	Intergenic	AluY|SINE|Alu	-2442	NR_145978	102723508		NM_001397448	ENSG00000232593	KANTR	LINC01155|Spasm	KANTR integral membrane protein	protein-coding
121711	chr19	47600021	47601550	+	0	NA	Intergenic	CpG	-7411	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
48000	chr12	6920501	6920700	+	0	NA	intron (NM_001975, intron 8 of 11)	AluSp|SINE|Alu	-3859	NM_001007026	1822		NM_001940	ENSG00000111676	ATN1	B37|CHEDDA|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding
49052	chr12	14397321	14398080	+	0	NA	intron (NM_181352, intron 1 of 14)	L3|LINE|CR1	12419	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
105224	chr17	82350201	82350950	+	0	NA	Intergenic	Intergenic	-8672	NM_207459	400629		NM_207459	ENSG00000182459	TEX19	-	testis expressed 19	protein-coding
201502	chr6	149044451	149044750	+	0	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-11939	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
155420	chr22	38412321	38413630	+	0	NA	Intergenic	CpG	-14049	NR_002821	400927		NM_001034843		TPTEP2	Z98749.2	TPTE pseudogene 2	pseudo
43623	chr11	83191371	83191730	+	0	NA	intron (NR_149009, intron 1 of 2)	AluSq2|SINE|Alu	2119	NR_149009	100506282		NM_018705	ENSG00000247137	ANKRD42-DT	-	ANKRD42 divergent transcript	ncRNA
102782	chr17	76352871	76354980	+	0	NA	promoter-TSS (NM_001330503)	promoter-TSS (NM_001330503)	-9	NM_001330503	5635		NM_002766	ENSG00000161542	PRPSAP1	PAP39	phosphoribosyl pyrophosphate synthetase associated protein 1	protein-coding
128781	chr2	62227301	62227800	+	0	NA	Intergenic	Intergenic	12029	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
80837	chr16	3490721	3491380	+	0	NA	Intergenic	Intergenic	4439	NM_001080524	646174		NM_001080524	ENSG00000215131	C16orf90	-	chromosome 16 open reading frame 90	protein-coding
194189	chr6	32130021	32131480	+	0	NA	promoter-TSS (NM_022110).3	promoter-TSS (NM_022110).3	-462	NM_022110	63943		NM_022110	ENSG00000204315	FKBPL	DIR1|NG7|WISP39	FKBP prolyl isomerase like	protein-coding
189802	chr5	176870421	176871030	+	0	NA	intron (NM_133369, intron 6 of 14)	intron (NM_133369, intron 6 of 14)	28621	NM_002115	3101		NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3	protein-coding
140541	chr2	233254271	233254430	+	0	NA	intron (NM_198890, intron 1 of 13).2	intron (NM_198890, intron 1 of 13).2	2677	NM_017974	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
26804	chr10	23437771	23437930	+	0	NA	Intergenic	Intergenic	-1225	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
122663	chr19	49868801	49871430	+	0	NA	intron (NM_001278160, intron 4 of 4)	CpG	-2539	NM_007254	11284		NM_007254	ENSG00000039650	PNKP	AOA4|CMT2B2|EIEE10|MCSZ|PNK	polynucleotide kinase 3'-phosphatase	protein-coding
168315	chr3	141602251	141603200	+	0	NA	intron (NM_001303246, intron 20 of 24)	L1M4a1|LINE|L1	-60474	NR_136190	646730		NR_136190		LINC02618	-	long intergenic non-protein coding RNA 2618	ncRNA
11580	chr1	91546171	91546750	+	0	NA	Intergenic	CpG	45352	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
115908	chr19	16600301	16600700	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	27704	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
6346	chr1	27727871	27728180	+	0	NA	intron (NM_001143914, intron 2 of 7)	AluSg4|SINE|Alu	2064	NM_001143915	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
135029	chr2	156314671	156315550	+	0	NA	Intergenic	Intergenic	17611	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
205027	chr7	6505951	6506650	+	0	NA	intron (NM_001145118, intron 13 of 21)	intron (NM_001145118, intron 13 of 21)	-22148	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
232612	chr9	136437451	136437750	+	0	NA	intron (NM_001318502, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	2245	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
118983	chr19	38877721	38879080	+	0	NA	promoter-TSS (NM_198445).2	promoter-TSS (NM_198445).2	-125	NM_001195833	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
80014	chr16	1925371	1926030	+	0	NA	Intergenic	Intergenic	-7285	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
120834	chr19	45504301	45505200	+	0	NA	Intergenic	AluSz|SINE|Alu	-2729	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
104960	chr17	81963551	81964050	+	0	NA	Intergenic	MIR|SINE|MIR	-2613	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
17172	chr1	156219971	156220130	+	0	NA	intron (NM_001199664, intron 1 of 4)	AluY|SINE|Alu	7062	NM_001199653	11243		NM_007221	ENSG00000160783	PMF1	-	polyamine modulated factor 1	protein-coding
68538	chr14	89246271	89246630	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	170783	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
171488	chr3	196566271	196566430	+	0	NA	intron (NM_001345907, intron 1 of 2)	AluJb|SINE|Alu	2204	NM_001345917	348793		NM_182627	ENSG00000185798	WDR53	-	WD repeat domain 53	protein-coding
178685	chr4	152528251	152528550	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	6633	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
118212	chr19	35152801	35153000	+	0	NA	intron (NM_022006, intron 5 of 5)	intron (NM_022006, intron 5 of 5)	-1835	NM_001320912	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
158292	chr22	50366421	50366800	+	0	NA	intron (NM_001351641, intron 1 of 23)	L1MEc|LINE|L1	23283	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
111913	chr19	4692401	4692800	+	0	NA	intron (NR_158699, intron 13 of 22)	intron (NR_158699, intron 13 of 22)	13318	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
151993	chr22	19174971	19175130	+	0	NA	TTS (NM_001287387)	TTS (NM_001287387)	3344	NR_103767	100652736		NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
122764	chr19	50134901	50135400	+	0	NA	Intergenic	AluSp|SINE|Alu	-1286	NR_024231	100170224		NR_024231		SNAR-B1	-	small NF90 (ILF3) associated RNA B1	snRNA
115658	chr19	16132721	16133180	+	0	NA	3' UTR (NM_005370, exon 8 of 8)	3' UTR (NM_005370, exon 8 of 8)	-1078	NR_111904	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
68769	chr14	91087371	91087730	+	0	NA	intron (NM_001358312, intron 1 of 13)	LTR10C|LTR|ERV1	-26463	NM_001102366	80017		NM_024952	ENSG00000133943	DGLUCY	C14orf159	D-glutamate cyclase	protein-coding
178418	chr4	147755521	147755780	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	23562	NM_024605	79658		NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
171615	chr3	197438121	197438380	+	0	NA	Intergenic	Intergenic	71411	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
111282	chr19	3556401	3558900	+	0	NA	promoter-TSS (NM_001287529)	promoter-TSS (NM_001287529)	-64	NM_174983	126321		NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501|SLC59B1	major facilitator superfamily domain containing 12	protein-coding
89241	chr16	88643271	88643680	+	0	NA	exon (NM_000101, exon 6 of 6)	exon (NM_000101, exon 6 of 6)	4903	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
39526	chr11	61090971	61091530	+	0	NA	Intergenic	Intergenic	-2713	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
5758	chr1	26482371	26482530	+	0	NA	Intergenic	L1MB7|LINE|L1	10010	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
18263	chr1	161073571	161074380	+	0	NA	intron (NM_030916, intron 6 of 8)	intron (NM_030916, intron 6 of 8)	-4084	NM_001287602	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
172804	chr4	2965951	2966250	+	0	NA	intron (NM_001350173, intron 1 of 13)	intron (NM_001350173, intron 1 of 13)	2529	NM_005307	2868		NM_005307	ENSG00000125388	GRK4	GPRK2L|GPRK4|GRK4a|IT11	G protein-coupled receptor kinase 4	protein-coding
109541	chr19	869171	869480	+	0	NA	intron (NM_005481, intron 13 of 15)	intron (NM_005481, intron 13 of 15)	9661	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
225772	chr9	37414921	37415980	+	0	NA	Intergenic	Intergenic	-7246	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
219040	chr8	65743551	65743850	+	0	NA	intron (NM_001242318, intron 5 of 12)	intron (NM_001242318, intron 5 of 12)	45357	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
28426	chr10	48304251	48305030	+	0	NA	Intergenic	L2b|LINE|L2	-1999	NM_001278547	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
25403	chr10	6532071	6532600	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	47941	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
72709	chr15	38650651	38652070	+	0	NA	Intergenic	Intergenic	-45238	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
69363	chr14	94008971	94009130	+	0	NA	TTS (NM_001351596)	TTS (NM_001351596)	11749	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
223654	chr8	144356771	144356930	+	0	NA	exon (NM_012162, exon 5 of 9)	exon (NM_012162, exon 5 of 9)	-1241	NM_001280561	340393		NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
205249	chr7	8115451	8115980	+	0	NA	intron (NR_146928, intron 13 of 14)	intron (NR_146928, intron 13 of 14)	146452	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
184478	chr5	100833071	100833430	+	0	NA	intron (NM_005668, intron 4 of 4)	L2c|LINE|L2	-16685	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
213601	chr7	139393351	139393450	+	0	NA	intron (NM_016019, intron 2 of 9)	AluJb|SINE|Alu	33506	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
135247	chr2	159713871	159714100	+	0	NA	intron (NM_001376242, intron 1 of 9)	intron (NM_001376242, intron 1 of 9)	1479	NM_001376255	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
177267	chr4	109438251	109438630	+	0	NA	intron (NM_001318085, intron 1 of 23)	AluJr|SINE|Alu	-4623	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
96449	chr17	40214621	40215080	+	0	NA	Intergenic	AluSz|SINE|Alu	-4454	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
115371	chr19	15235871	15236500	+	0	NA	3' UTR (NM_001379291, exon 20 of 20)	3' UTR (NM_001379291, exon 20 of 20)	-3138	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
220810	chr8	102782751	102783750	+	0	NA	Intergenic	MER90a|LTR|ERV1	-23572	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
70975	chr14	104705551	104705850	+	0	NA	TTS (NM_032714)	TTS (NM_032714)	16082	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
135323	chr2	160347301	160347530	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	60467	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
100356	chr17	59963801	59965530	+	0	NA	promoter-TSS (NM_016125)	promoter-TSS (NM_016125)	75	NM_016125	51136		NM_016125	ENSG00000189050	RNFT1	PTD016	ring finger protein, transmembrane 1	protein-coding
42824	chr11	72831501	72832550	+	0	NA	Intergenic	Intergenic	17614	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
77143	chr15	79900971	79901130	+	0	NA	intron (NR_037652, intron 2 of 2)	L1ME4c|LINE|L1	-3765	NM_001199758	10588		NM_006441	ENSG00000136371	MTHFS	HsT19268|NEDMEHM	methenyltetrahydrofolate synthetase	protein-coding
12007	chr1	95233671	95235400	+	0	NA	promoter-TSS (NR_125948)	promoter-TSS (NR_125948)	325	NM_015485	25950		NM_015485	ENSG00000122481	RWDD3	RSUME	RWD domain containing 3	protein-coding
24697	chr1	247303951	247304050	+	0	NA	intron (NM_032752, intron 9 of 9)	MLT1B-int|LTR|ERVL-MaLR	27867	NM_032752	84838		NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
234856	chrX	24709451	24709830	+	0	NA	intron (NR_165483, intron 4 of 35)	SVA_F|Retroposon|SVA	15722	NM_001330360	5422		NM_016937	ENSG00000101868	POLA1	NSX|PDR|POLA|VEODS|p180	DNA polymerase alpha 1, catalytic subunit	protein-coding
63720	chr14	21204351	21204880	+	0	NA	non-coding (NR_038970, exon 1 of 1)	non-coding (NR_038970, exon 1 of 1)	888	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
144576	chr20	35775501	35776150	+	0	NA	intron (NM_016436, intron 1 of 17)	intron (NM_016436, intron 1 of 17)	3810	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
213951	chr7	142714151	142715430	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-34682	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
167533	chr3	129310051	129310150	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-6171	NR_026991	339942		NM_001025468		H1-10-AS1	C3orf47|H1FX-AS1	H1-10 antisense RNA 1	ncRNA
136558	chr2	177547671	177547830	+	0	NA	Intergenic	Intergenic	5046	NM_152517	150737		NM_152517	ENSG00000196659	IFT70B	IFT70|TTC30B|fleer	intraflagellar transport 70B	protein-coding
85684	chr16	56422951	56423350	+	0	NA	intron (NM_001144, intron 1 of 13)	intron (NM_001144, intron 1 of 13)	1839	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
223904	chr9	399901	401250	+	0	NA	intron (NM_203447, intron 26 of 47)	intron (NM_203447, intron 26 of 47)	-69716	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
196437	chr6	43476951	43478800	+	0	NA	intron (NM_001350564, intron 1 of 9)	intron (NM_001350564, intron 1 of 9)	305	NM_001350569	93643		NM_080604	ENSG00000137221	TJAP1	PILT|TJP4	tight junction associated protein 1	protein-coding
3761	chr1	16671471	16671830	+	0	NA	Intergenic	THE1A|LTR|ERVL-MaLR	-4702	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
158127	chr22	50112171	50112880	+	0	NA	intron (NM_001164104, intron 5 of 25)	intron (NM_001164104, intron 5 of 25)	22269	NM_001164105	54456		NM_018995	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8|SPGF73	Mov10 like RNA helicase 1	protein-coding
82963	chr16	21924771	21924930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-28511	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
47067	chr12	562271	562830	+	0	NA	3' UTR (NM_173593, exon 20 of 20)	3' UTR (NM_173593, exon 20 of 20)	23936	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
218382	chr8	43253521	43254100	+	0	NA	Intergenic	Intergenic	-38632	NM_001002920	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
221185	chr8	120718401	120719000	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-42553	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
98422	chr17	46769351	46770480	+	0	NA	exon (NM_030753, exon 3 of 5)	exon (NM_030753, exon 3 of 5)	48777	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
224233	chr9	5830851	5830950	+	0	NA	exon (NM_024896, exon 2 of 15)	exon (NM_024896, exon 2 of 15)	2217	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
74075	chr15	52661551	52661650	+	0	NA	intron (NR_169533, intron 3 of 3)	intron (NR_169533, intron 3 of 3)	-9560	NR_169552	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
223753	chr8	144514671	144515180	+	0	NA	intron (NM_004260, intron 9 of 20)	intron (NM_004260, intron 9 of 20)	2908	NM_004260	9401		NM_004260	ENSG00000160957	RECQL4	RECQ4	RecQ like helicase 4	protein-coding
66904	chr14	65281801	65282430	+	0	NA	Intergenic	Intergenic	53068	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
150273	chr21	41783421	41783880	+	0	NA	Intergenic	LTR3B|LTR|ERVK	-16598	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
149356	chr21	29296471	29297330	+	0	NA	Intergenic	AluSc|SINE|Alu	-2022	NM_001186	571		NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding
196896	chr6	52304451	52305580	+	0	NA	Intergenic	Intergenic	-20273	NM_001270472	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
78311	chr15	90931571	90933300	+	0	NA	exon (NM_198527, exon 1 of 4)	exon (NM_198527, exon 1 of 4)	114	NR_104447	374659		NM_198527	ENSG00000184508	HDDC3	(ppGpp)ase|MESH1|MYNRL15	HD domain containing 3	protein-coding
222537	chr8	140586071	140586330	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	49433	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
32846	chr10	110054901	110055100	+	0	NA	intron (NM_016824, intron 1 of 14)	AluSg|SINE|Alu	-46619	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
228115	chr9	96618371	96618730	+	0	NA	intron (NR_147239, intron 1 of 14)	CpG	1293	NM_003671	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
104648	chr17	81460171	81460330	+	0	NA	intron (NM_001377448, intron 23 of 27)	intron (NM_001377448, intron 23 of 27)	-9062	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
180740	chr5	31867851	31867950	+	0	NA	intron (NM_178140, intron 2 of 24)	G-rich|Low_complexity|Low_complexity	68259	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
235044	chrX	40096301	40097150	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	1233	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
211312	chr7	103352251	103352550	+	0	NA	TTS (NM_001321787)	TTS (NM_001321787)	4757	NM_002803	5701		NM_002803	ENSG00000161057	PSMC2	MSS1|Nbla10058|RPT1|S7	proteasome 26S subunit, ATPase 2	protein-coding
57503	chr12	122101121	122101380	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	22494	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
46114	chr11	122882451	122883700	+	0	NA	5' UTR (NM_001363089, exon 1 of 9)	5' UTR (NM_001363089, exon 1 of 9)	145	NM_001363089	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
213865	chr7	142320101	142320800	+	0	NA	Intergenic	Intergenic	-48201	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
45347	chr11	118237871	118238230	+	0	NA	intron (NM_001286152, intron 2 of 5)	AluSz|SINE|Alu	-13039	NM_001286570	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
88160	chr16	81697201	81697700	+	0	NA	intron (NM_030629, intron 14 of 20)	intron (NM_030629, intron 14 of 20)	32096	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
205138	chr7	7156721	7158150	+	0	NA	Intergenic	L1M8|LINE|L1	-25109	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
91206	chr17	3915271	3915700	+	0	NA	intron (NM_002558, intron 1 of 11)	intron (NM_002558, intron 1 of 11)	980	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
187417	chr5	141970371	141970830	+	0	NA	intron (NM_183401, intron 1 of 8)	intron (NM_183401, intron 1 of 8)	1495	NM_004290	9604		NM_004290	ENSG00000013561	RNF14	ARA54|HFB30|HRIHFB2038|TRIAD2	ring finger protein 14	protein-coding
88408	chr16	84652421	84653230	+	0	NA	intron (NM_024731, intron 2 of 4)	L1ME3A|LINE|L1	4314	NM_024731	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
27441	chr10	31789451	31789950	+	0	NA	Intergenic	L1ME3|LINE|L1	119226	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
175343	chr4	68451521	68451980	+	0	NA	intron (NM_014058, intron 1 of 9).2	MIRb|SINE|MIR	4287	NM_014058	28983		NM_014058	ENSG00000087128	TMPRSS11E	DESC1|TMPRSS11E2	transmembrane serine protease 11E	protein-coding
137363	chr2	196164801	196165500	+	0	NA	intron (NM_004226, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	6428	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
68947	chr14	91396151	91396450	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	21520	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
82072	chr16	14093951	14094050	+	0	NA	intron (NM_001365418, intron 3 of 5)	intron (NM_001365418, intron 3 of 5)	22681	NM_001365421	57496		NM_014048	ENSG00000186260	MRTFB	MKL2|MRTF-B|NPD001	myocardin related transcription factor B	protein-coding
175227	chr4	56913051	56913630	+	0	NA	intron (NM_001193508, intron 2 of 3)	intron (NM_001193508, intron 2 of 3)	4427	NM_001193508	5978		NM_005612	ENSG00000084093	REST	DFNA27|GINGF5|HGF5|NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
75101	chr15	64458001	64458600	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-2278	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
71109	chr14	104894571	104894930	+	0	NA	exon (NM_015005, exon 18 of 18)	exon (NM_015005, exon 18 of 18)	29436	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
31976	chr10	100744521	100744830	+	0	NA	promoter-TSS (NM_000278)	promoter-TSS (NM_000278)	-907	NM_003987	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
34941	chr11	446051	446430	+	0	NA	Intergenic	Intergenic	-2028	NM_001329548	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
158974	chr3	10254551	10254650	+	0	NA	intron (NM_014760, intron 2 of 7)	L2a|LINE|L2	6141	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
88195	chr16	81754351	81754450	+	0	NA	Intergenic	Intergenic	-24891	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
44632	chr11	109697351	109697450	+	0	NA	Intergenic	L1PA16|LINE|L1	275210	NM_207645	399947		NM_207645	ENSG00000185742	C11orf87	LOH11CR1A|NEURIM1	chromosome 11 open reading frame 87	protein-coding
210314	chr7	99474571	99474930	+	0	NA	intron (NM_001350999, intron 1 of 3)	intron (NM_001350999, intron 1 of 3)	1858	NM_001351000	285989		NM_213603	ENSG00000198556	ZNF789	-	zinc finger protein 789	protein-coding
208860	chr7	73718771	73720230	+	0	NA	intron (NM_001165903, intron 1 of 9)	CpG	169	NM_004603	6804		NM_004603	ENSG00000106089	STX1A	HPC-1|P35-1|STX1|SYN1A	syntaxin 1A	protein-coding
163500	chr3	51382651	51382950	+	0	NA	3' UTR (NM_004947, exon 53 of 53)	3' UTR (NM_004947, exon 53 of 53)	-2491	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
144772	chr20	36622001	36622400	+	0	NA	intron (NM_175077, intron 5 of 7)	AluSx|SINE|Alu	16421	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
188296	chr5	151151301	151152200	+	0	NA	intron (NM_001363114, intron 1 of 24)	intron (NM_001363114, intron 1 of 24)	6029	NM_001155	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
69001	chr14	91491721	91492150	+	0	NA	intron (NR_158976, intron 2 of 16)	AluJo|SINE|Alu	18375	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
75808	chr15	69059001	69059600	+	0	NA	non-coding (NR_033672, exon 17 of 17)	non-coding (NR_033672, exon 17 of 17)	-21550	NR_026949	283673		NM_173610	ENSG00000212766	EWSAT1	LINC00277|NCRNA00277|TMEM84	Ewing sarcoma associated transcript 1	ncRNA
214883	chr7	151407271	151407700	+	0	NA	intron (NM_001284261, intron 1 of 4)	intron (NM_001284261, intron 1 of 4)	-1676	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
196341	chr6	43178971	43179200	+	0	NA	intron (NM_001292001, intron 6 of 6)	intron (NM_001292001, intron 6 of 6)	-3111	NM_015089	23113		NM_015089	ENSG00000112659	CUL9	H7AP1|PARC	cullin 9	protein-coding
189619	chr5	176007171	176007600	+	0	NA	Intergenic	Intergenic	-39070	NM_032361	84321		NM_032361	ENSG00000051596	THOC3	THO3|hTREX45	THO complex subunit 3	protein-coding
64064	chr14	22553441	22554820	+	0	NA	Intergenic	Intergenic	2932	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
63637	chr14	20780751	20781350	+	0	NA	promoter-TSS (NM_005615)	promoter-TSS (NM_005615)	-218	NM_005615	6039		NM_005615	ENSG00000169413	RNASE6	RAD1|RNS6|RNasek6	ribonuclease A family member k6	protein-coding
224421	chr9	15228401	15228600	+	0	NA	intron (NM_152574, intron 2 of 19)	MER57E1|LTR|ERV1	21718	NM_001168342	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
189787	chr5	176726571	176727200	+	0	NA	Intergenic	Intergenic	-16320	NR_108030	102577424		NR_108030	ENSG00000248859	LINC01574	HI-LNC12	long intergenic non-protein coding RNA 1574	ncRNA
36343	chr11	3903471	3904200	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	47773	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
164048	chr3	53494171	53494880	+	0	NA	promoter-TSS (NM_000720)	promoter-TSS (NM_000720)	-86	NM_000720	776		NM_000720	ENSG00000157388	CACNA1D	CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD	calcium voltage-gated channel subunit alpha1 D	protein-coding
232809	chr9	136716021	136716850	+	0	NA	intron (NM_152421, intron 1 of 4)	AluJb|SINE|Alu	3863	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
102807	chr17	76410051	76410350	+	0	NA	intron (NM_022066, intron 1 of 17)	L2a|LINE|L2	24922	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
21202	chr1	204064071	204064230	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-8965	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
58816	chr12	132819451	132819730	+	0	NA	intron (NM_005895, intron 2 of 23)	intron (NM_005895, intron 2 of 23)	8799	NM_005895	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
74820	chr15	63481071	63482280	+	0	NA	Intergenic	Intergenic	-22836	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
30041	chr10	73807401	73807780	+	0	NA	exon (NM_003635, exon 3 of 15)	exon (NM_003635, exon 3 of 15)	4008	NM_001330107	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
159806	chr3	16339081	16339680	+	0	NA	non-coding (NR_148220, exon 11 of 11)	non-coding (NR_148220, exon 11 of 11)	74168	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
34778	chr11	210901	211100	+	0	NA	intron (NM_001286134, intron 4 of 9)	intron (NM_001286134, intron 4 of 9)	1664	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
217185	chr8	26315401	26315980	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	22474	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
200165	chr6	130537471	130537630	+	0	NA	Intergenic	L1PREC2|LINE|L1	100433	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
197255	chr6	70371501	70371780	+	0	NA	Intergenic	Intergenic	-22562	NR_125857	101928353		NR_125857		LINC01610	EVADR	long intergenic non-protein coding RNA 1610	ncRNA
187591	chr5	142845071	142846430	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	23160	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
133935	chr2	130454771	130454930	+	0	NA	Intergenic	Intergenic	-13169	NR_103761	646802		NR_103761	ENSG00000290599	CYP4F62P	CYP4F43P	cytochrome P450 family 4 subfamily F member 62, pseudogene	pseudo
39214	chr11	57562201	57562400	+	0	NA	intron (NM_198183, intron 1 of 3)	L1M1|LINE|L1	5372	NM_004223	9246		NM_004223	ENSG00000156587	UBE2L6	RIG-B|UBCH8	ubiquitin conjugating enzyme E2 L6	protein-coding
105409	chr17	82780551	82780650	+	0	NA	intron (NM_005993, intron 6 of 38)	AluSx3|SINE|Alu	28535	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
235407	chrX	45743151	45743250	+	0	NA	Intergenic	MLT1A1-int|LTR|ERVL-MaLR	3066	NR_029635	407006		NR_029635	ENSG00000207870	MIR221	MIRN221|miRNA221|mir-221	microRNA 221	ncRNA
168426	chr3	142448951	142449280	+	0	NA	TTS (NM_001354579)	TTS (NM_001354579)	-1053	NM_001282859	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
1589	chr1	3613871	3614230	+	0	NA	Intergenic	Intergenic	-2542	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
83097	chr16	22449351	22449450	+	0	NA	intron (NR_027154, intron 1 of 28)	MER77B|LTR|ERVL	-11685	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
51549	chr12	52525401	52525600	+	0	NA	Intergenic	Intergenic	-5106	NM_000424	3852		NM_000424	ENSG00000186081	KRT5	CK5|DDD|DDD1|EBS1|EBS2|EBS2A|EBS2B|EBS2C|EBS2D|EBS2E|EBS2F|K5|KRT5A	keratin 5	protein-coding
55541	chr12	105357021	105357700	+	0	NA	intron (NM_001145199, intron 2 of 5)	(T)n|Simple_repeat|Simple_repeat	26669	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
60964	chr13	46593201	46594180	+	0	NA	intron (NM_015116, intron 1 of 18)	intron (NM_015116, intron 1 of 18)	40520	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
79424	chr16	697171	697330	+	0	NA	exon (NM_153350, exon 2 of 6)	exon (NM_153350, exon 2 of 6)	-6852	NM_032259	84219		NM_032259	ENSG00000127580	WDR24	C16orf21|JFP7	WD repeat domain 24	protein-coding
114515	chr19	12798021	12799400	+	0	NA	intron (NM_005809, intron 5 of 5)	FLAM_A|SINE|Alu	3090	NM_005809	7001		NM_005809	ENSG00000167815	PRDX2	HEL-S-2a|NKEF-B|NKEFB|PRP|PRX2|PRXII|PTX1|TDPX1|TPX1|TSA	peroxiredoxin 2	protein-coding
227312	chr9	89428551	89428650	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	51290	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
154595	chr22	36285621	36285880	+	0	NA	exon (NM_002473, exon 37 of 41)	exon (NM_002473, exon 37 of 41)	1157	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
237962	chrX	133722771	133723130	+	0	NA	intron (NM_001164617, intron 3 of 8)	intron (NM_001164617, intron 3 of 8)	-174493	NR_148713	110806308		NR_148713	ENSG00000286096	GPC3-AS1	-	GPC3 antisense RNA 1	ncRNA
230805	chr9	129020351	129020650	+	0	NA	intron (NR_163192, intron 1 of 10)	AluSx1|SINE|Alu	7831	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
121832	chr19	48112021	48112280	+	0	NA	Intergenic	Intergenic	-1298	NM_001159322	8605		NM_003706	ENSG00000105499	PLA2G4C	CPLA2-gamma	phospholipase A2 group IVC	protein-coding
147461	chr20	59028771	59029230	+	0	NA	intron (NM_006886, intron 2 of 2)	intron (NM_006886, intron 2 of 2)	3335	NM_006886	514		NM_006886	ENSG00000124172	ATP5F1E	ATP5E|ATPE|MC5DN3	ATP synthase F1 subunit epsilon	protein-coding
62013	chr13	84086001	84086830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-54187	NR_046871	100874128		NR_046871		LINC00333	NCRNA00333	long intergenic non-protein coding RNA 333	ncRNA
157791	chr22	46772221	46772550	+	0	NA	intron (NR_104292, intron 2 of 13)	(ATACAC)n|Simple_repeat|Simple_repeat	-1542	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
117711	chr19	29262101	29262300	+	0	NA	Intergenic	Intergenic	-49049	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
72217	chr15	30183751	30184250	+	0	NA	Intergenic	Intergenic	-12036	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
193531	chr6	30593551	30594180	+	0	NA	Intergenic	Intergenic	9533	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
184795	chr5	111222021	111222630	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-1258	NM_001323375	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
32427	chr10	102492721	102493180	+	0	NA	intron (NM_005736, intron 1 of 10)	AluSz6|SINE|Alu	9762	NM_005736	10121		NM_005736	ENSG00000138107	ACTR1A	ARP1|Arp1A|CTRN1	actin related protein 1A	protein-coding
132167	chr2	101768421	101769450	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	70670	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
193816	chr6	31470621	31471030	+	0	NA	promoter-TSS (NR_002812)	promoter-TSS (NR_002812)	-404	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
78619	chr15	94229121	94230040	+	0	NA	Intergenic	Intergenic	-1981	NM_018349	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
20864	chr1	202009221	202010300	+	0	NA	promoter-TSS (NM_001114309)	promoter-TSS (NM_001114309)	593	NR_146472	102723465		NR_146472		ELF3-AS1	SCAT7	ELF3 antisense RNA 1	ncRNA
202169	chr6	155328471	155328630	+	0	NA	Intergenic	Intergenic	-14066	NR_146725	51106		NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
145233	chr20	38923571	38923950	+	0	NA	TTS (NM_015568)	TTS (NM_015568)	-2657	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
90153	chr17	145271	145630	+	0	NA	3' UTR (NM_003585, exon 9 of 9).2	3' UTR (NM_003585, exon 9 of 9).2	7881	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
167112	chr3	127652151	127652780	+	0	NA	intron (NM_015720, intron 2 of 7)	intron (NM_015720, intron 2 of 7)	-20473	NM_032548	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
199175	chr6	111755401	111755880	+	0	NA	intron (NM_002037, intron 3 of 13)	L1ME4a|LINE|L1	3491	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
19859	chr1	183219071	183219980	+	0	NA	intron (NM_005562, intron 4 of 22)	L1ME3B|LINE|L1	33261	NM_005562	3918		NM_005562	ENSG00000058085	LAMC2	B2T|BM600|CSF|EBR2|EBR2A|JEB3A|JEB3B|LAMB2T|LAMNB2	laminin subunit gamma 2	protein-coding
183324	chr5	76717601	76717950	+	0	NA	intron (NM_001992, intron 1 of 1)	intron (NM_001992, intron 1 of 1)	1649	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
9107	chr1	45305701	45305900	+	0	NA	TTS (NR_024270)	TTS (NR_024270)	1890	NR_024270	400752		NR_024270	ENSG00000281912	LINC01144	-	long intergenic non-protein coding RNA 1144	ncRNA
159587	chr3	15067021	15067480	+	0	NA	Intergenic	AluSg|SINE|Alu	-1935	NM_022497	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
201706	chr6	149709551	149710230	+	0	NA	intron (NM_001350339, intron 1 of 9)	AluSg|SINE|Alu	6535	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
102586	chr17	75890701	75891350	+	0	NA	exon (NM_001256124, exon 5 of 5)	exon (NM_001256124, exon 5 of 5)	5926	NM_001256124	201292		NM_173547	ENSG00000141569	TRIM65	4732463G12Rik	tripartite motif containing 65	protein-coding
147790	chr20	62622051	62622350	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-20303	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
107264	chr18	42028271	42029000	+	0	NA	intron (NM_002647, intron 14 of 24)	intron (NM_002647, intron 14 of 24)	73401	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
110284	chr19	1823601	1824530	+	0	NA	intron (NM_020695, intron 3 of 15)	intron (NM_020695, intron 3 of 15)	1976	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
157460	chr22	45267901	45268500	+	0	NA	Intergenic	Intergenic	-16749	NM_006953	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
41647	chr11	66510171	66510930	+	0	NA	promoter-TSS (NM_024649)	promoter-TSS (NM_024649)	-85	NM_024649	582		NM_024649	ENSG00000174483	BBS1	BBS2L2	Bardet-Biedl syndrome 1	protein-coding
129823	chr2	72147251	72147880	+	0	NA	intron (NM_019885, intron 1 of 5)	CpG	297	NM_001277742	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
104305	chr17	80892901	80893950	+	0	NA	intron (NM_020761, intron 19 of 33)	(GT)n|Simple_repeat|Simple_repeat	77788	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
67210	chr14	68935771	68936130	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	43352	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
13174	chr1	112390651	112391430	+	0	NA	Intergenic	Intergenic	-5174	NM_018704	55917		NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
119481	chr19	40447751	40448050	+	0	NA	exon (NM_000713, exon 5 of 5)	exon (NM_000713, exon 5 of 5)	-3565	NM_203344	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
83129	chr16	22578301	22578500	+	0	NA	Intergenic	Intergenic	32702	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
207067	chr7	39896401	39896800	+	0	NA	Intergenic	Intergenic	52819	NR_158201	112267983		NR_158201	ENSG00000259826	CDK13-DT	-	CDK13 divergent transcript	ncRNA
175049	chr4	53315451	53315550	+	0	NA	intron (NM_152540, intron 2 of 8)	intron (NM_152540, intron 2 of 8)	50561	NM_152540	152579		NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
137069	chr2	190905221	190906000	+	0	NA	intron (NM_014905, intron 6 of 17)	intron (NM_014905, intron 6 of 17)	24789	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
60328	chr13	40666201	40667600	+	0	NA	promoter-TSS (NM_002015)	promoter-TSS (NM_002015)	-259	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
210087	chr7	97016621	97017100	+	0	NA	Intergenic	CpG	-2795	NR_015448	285987		NR_015448		DLX6-AS1	DLX6-AS|DLX6AS|Evf-2|NCRNA00212	DLX6 antisense RNA 1	ncRNA
87107	chr16	68606551	68606850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-38610	NM_001317196	1001		NM_001793	ENSG00000062038	CDH3	CDHP|HJMD|PCAD	cadherin 3	protein-coding
138956	chr2	218260301	218260500	+	0	NA	promoter-TSS (NM_001077191)	promoter-TSS (NM_001077191)	-615	NM_001077194	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
134016	chr2	131036551	131037150	+	0	NA	intron (NM_001375904, intron 2 of 10)	intron (NM_001375904, intron 2 of 10)	56312	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
127282	chr2	38729851	38730430	+	0	NA	intron (NM_138801, intron 5 of 6)	intron (NM_138801, intron 5 of 6)	21221	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
81384	chr16	5088851	5089150	+	0	NA	intron (NM_201598, intron 6 of 6)	intron (NM_201598, intron 6 of 6)	8795	NM_201400	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
200504	chr6	135568121	135568780	+	0	NA	intron (NR_152845, intron 2 of 4)	intron (NR_152845, intron 2 of 4)	70649	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
120050	chr19	41998451	41999850	+	0	NA	exon (NM_002088, exon 19 of 19)	exon (NM_002088, exon 19 of 19)	-4920	NM_152296	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
212206	chr7	118195521	118196110	+	0	NA	3' UTR (NM_016200, exon 4 of 4)	3' UTR (NM_016200, exon 4 of 4)	11651	NM_016200	51691		NM_016200	ENSG00000128534	LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding
39722	chr11	61774601	61774830	+	0	NA	intron (NM_013279, intron 8 of 25)	intron (NM_013279, intron 8 of 25)	-17051	NR_026882	26070		NR_026882	ENSG00000124915	MYRF-AS1	DKFZP434K028	MYRF antisense RNA 1	ncRNA
127913	chr2	46304451	46304980	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	7308	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
28847	chr10	62593971	62594430	+	0	NA	Intergenic	Intergenic	-210520	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
110330	chr19	1867571	1867730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4071	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
238100	chrX	136598671	136599430	+	0	NA	Intergenic	Intergenic	-40493	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
230661	chr9	128705801	128706430	+	0	NA	intron (NM_001317926, intron 3 of 21)	intron (NM_001317926, intron 3 of 21)	3612	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
175192	chr4	56505301	56506400	+	0	NA	promoter-TSS (NM_001363794)	promoter-TSS (NM_001363794)	59	NM_001363794	132946		NM_206919	ENSG00000196503	ARL9	-	ADP ribosylation factor like GTPase 9	protein-coding
158038	chr22	49933071	49933530	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	14666	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
188268	chr5	151093671	151094650	+	0	NA	Intergenic	Intergenic	-6475	NM_001252390	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
146106	chr20	47784951	47785450	+	0	NA	intron (NM_198596, intron 1 of 20)	CpG	864	NM_018837	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
138606	chr2	208269001	208269600	+	0	NA	intron (NM_015040, intron 1 of 41)	intron (NM_015040, intron 1 of 41)	3033	NM_152671	200576		NM_015040	ENSG00000115020	PIKFYVE	CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29	phosphoinositide kinase, FYVE-type zinc finger containing	protein-coding
161559	chr3	42701151	42701880	+	0	NA	promoter-TSS (NR_027753)	promoter-TSS (NR_027753)	6	NR_027753	57467		NM_020707	ENSG00000010282	HHATL	C3orf3|GUP1|MBOAT3|MSTP002|OACT3	hedgehog acyltransferase like	protein-coding
225576	chr9	36036471	36037830	+	0	NA	intron (NM_021111, intron 1 of 20)	CpG	237	NM_021111	8434		NM_021111	ENSG00000122707	RECK	ST15	reversion inducing cysteine rich protein with kazal motifs	protein-coding
50580	chr12	48349171	48349500	+	0	NA	intron (NM_001172682, intron 1 of 4)	intron (NM_001172682, intron 1 of 4)	1584	NM_001365804	121274		NM_152320	ENSG00000167528	ZNF641	-	zinc finger protein 641	protein-coding
120444	chr19	44415251	44415350	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-13692	NM_152354	26974		NM_152354	ENSG00000267508	ZNF285	ZNF285A	zinc finger protein 285	protein-coding
225988	chr9	41271051	41271350	+	0	NA	Intergenic	L1M4|LINE|L1	-37365	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
24191	chr1	235954221	235954990	+	0	NA	Intergenic	AluJo|SINE|Alu	-70892	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
115899	chr19	16589821	16590480	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-17735	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
155819	chr22	39331821	39332080	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-12327	NM_001033853	6122		NM_000967	ENSG00000100316	RPL3	ASC-1|L3|TARBP-B|uL3	ribosomal protein L3	protein-coding
98920	chr17	48609101	48609600	+	0	NA	intron (NM_004502, intron 1 of 1)	intron (NM_004502, intron 1 of 1)	1667	NM_004502	3217		NM_004502	ENSG00000260027	HOXB7	HHO.C1|HOX2|HOX2C|Hox-2.3	homeobox B7	protein-coding
33686	chr10	119931251	119931550	+	0	NA	intron (NR_037771, intron 14 of 17)	AluJb|SINE|Alu	-27113	NR_039830	100616322		NR_039830	ENSG00000265370	MIR4682	-	microRNA 4682	ncRNA
74569	chr15	60538901	60539550	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	53301	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
237616	chrX	123991371	123991730	+	0	NA	intron (NM_001282418, intron 2 of 33)	AluSx|SINE|Alu	29844	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
22588	chr1	223129251	223129850	+	0	NA	intron (NM_003268, intron 5 of 5)	intron (NM_003268, intron 5 of 5)	13698	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
228903	chr9	112903251	112903350	+	0	NA	Intergenic	Intergenic	-12424	NM_033051	57864		NM_033051	ENSG00000119457	SLC46A2	Ly110|TSCOT	solute carrier family 46 member 2	protein-coding
104667	chr17	81490651	81490750	+	0	NA	Intergenic	Intergenic	22099	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
6694	chr1	29172401	29172630	+	0	NA	intron (NM_005626, intron 1 of 5)	AluSx1|SINE|Alu	9385	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
234669	chrX	20211021	20211680	+	0	NA	intron (NM_004586, intron 2 of 21)	MIRc|SINE|MIR	55559	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
137110	chr2	190986221	190986680	+	0	NA	intron (NM_139266, intron 14 of 22)	intron (NM_139266, intron 14 of 22)	27721	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
186005	chr5	133931671	133932030	+	0	NA	Intergenic	Intergenic	18173	NR_131252	105664404		NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
125524	chr2	12855601	12856050	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	118458	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
74738	chr15	63202421	63202880	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	13044	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
221202	chr8	120780251	120780550	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	19147	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
196525	chr6	43779171	43779330	+	0	NA	intron (NM_001171628, intron 5 of 5)	intron (NM_001171628, intron 5 of 5)	7282	NM_001287044	7422		NM_003376	ENSG00000112715	VEGFA	L-VEGF|MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
111564	chr19	4053601	4054580	+	0	NA	exon (NM_001317990, exon 2 of 3)	exon (NM_001317990, exon 2 of 3)	11439	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
87309	chr16	70182251	70182550	+	0	NA	exon (NM_173619, exon 6 of 13)	exon (NM_173619, exon 6 of 13)	-5922	NR_135173	105371328		NR_135173		LOC105371328	-	uncharacterized LOC105371328	ncRNA
130235	chr2	84831101	84831800	+	0	NA	intron (NM_001080824, intron 4 of 5)	intron (NM_001080824, intron 4 of 5)	49634	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
22312	chr1	213670271	213670630	+	0	NA	Intergenic	Intergenic	-254299	NR_046189	100861504		NR_046189		LINC00538	PROX1UT|Yiya	long intergenic non-protein coding RNA 538	ncRNA
109416	chr19	691421	691680	+	0	NA	intron (NM_214710, intron 3 of 4)	AluSz|SINE|Alu	3902	NM_001308209	400668		NM_214710	ENSG00000185198	PRSS57	NSP4|PRSSL1|UNQ782	serine protease 57	protein-coding
35080	chr11	618971	619730	+	0	NA	exon (NM_021924, exon 12 of 15).2	exon (NM_021924, exon 12 of 15).2	-3400	NM_004029	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
152417	chr22	20576071	20576850	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	68413	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
112497	chr19	6459641	6461250	+	0	NA	promoter-TSS (NM_024103)	promoter-TSS (NM_024103)	-653	NM_024103	79085		NM_024103	ENSG00000125648	SLC25A23	APC2|MCSC2|SCAMC3|SCaMC-3	solute carrier family 25 member 23	protein-coding
83327	chr16	24753321	24753580	+	0	NA	intron (NM_001330520, intron 3 of 23)	intron (NM_001330520, intron 3 of 23)	23799	NM_014494	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
234580	chrX	19764071	19764680	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	35398	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
228653	chr9	107256821	107257250	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-26244	NM_002874	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
91723	chr17	6646701	6646980	+	0	NA	intron (NM_016060, intron 3 of 3)	LTR5B|LTR|ERVK	4765	NM_016060	51003		NM_016060	ENSG00000108590	MED31	3110004H13Rik|CGI-125|SEP10|Soh1	mediator complex subunit 31	protein-coding
24898	chr10	1041421	1042030	+	0	NA	intron (NM_004508, intron 4 of 4)	intron (NM_004508, intron 4 of 4)	7161	NM_001317957	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
112836	chr19	7530671	7530830	+	0	NA	intron (NM_020533, intron 12 of 13)	AluSx|SINE|Alu	-3414	NM_006702	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
180518	chr5	14409271	14409430	+	0	NA	intron (NR_134469, intron 33 of 56)	intron (NR_134469, intron 33 of 56)	-54633	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
49583	chr12	27013801	27015040	+	0	NA	promoter-TSS (NM_016551)	promoter-TSS (NM_016551)	-36	NM_016551	51768		NM_016551	ENSG00000064115	TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
57222	chr12	121524401	121524800	+	0	NA	intron (NM_001005366, intron 8 of 22)	intron (NM_001005366, intron 8 of 22)	55646	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
112511	chr19	6479051	6479350	+	0	NA	intron (NM_024898, intron 4 of 22)	intron (NM_024898, intron 4 of 22)	2587	NM_001290331	79958		NM_024898	ENSG00000205744	DENND1C	FAM31C	DENN domain containing 1C	protein-coding
185956	chr5	133050421	133050680	+	0	NA	Intergenic	Intergenic	-1463	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
152591	chr22	21213321	21213580	+	0	NA	intron (NM_001351304, intron 11 of 16)	intron (NM_001351304, intron 11 of 16)	45585	NR_165621	642633		NM_201565	ENSG00000215498	FAM230B	-	family with sequence similarity 230 member B	ncRNA
91188	chr17	3886471	3887150	+	0	NA	intron (NM_172207, intron 1 of 15)	intron (NM_172207, intron 1 of 15)	3933	NM_172206	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
202010	chr6	152631151	152632050	+	0	NA	intron (NM_033071, intron 1 of 145)	L2c|LINE|L2	5251	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
10287	chr1	64843351	64843650	+	0	NA	intron (NM_001321857, intron 17 of 24)	MIRc|SINE|MIR	98425	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
117442	chr19	19657221	19657630	+	0	NA	intron (NM_020410, intron 3 of 25)	intron (NM_020410, intron 3 of 25)	6251	NM_020410	57130		NM_020410	ENSG00000105726	ATP13A1	ATP13A|CGI-152	ATPase 13A1	protein-coding
216372	chr8	17698721	17698980	+	0	NA	intron (NR_156437, intron 6 of 13)	intron (NR_156437, intron 6 of 13)	-1113	NM_020749	57509		NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1	microtubule associated scaffold protein 1	protein-coding
102978	chr17	76722771	76722930	+	0	NA	intron (NM_015167, intron 3 of 5)	AluSx|SINE|Alu	-3191	NM_001378349	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
71936	chr15	23035701	23036300	+	0	NA	intron (NM_001354377, intron 3 of 22)	intron (NM_001354377, intron 3 of 22)	3569	NM_001354376	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
69873	chr14	99285751	99286050	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-13703	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
218701	chr8	58580901	58581300	+	0	NA	intron (NM_001007069, intron 8 of 8)	intron (NM_001007069, intron 8 of 8)	27839	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
228754	chr9	110152651	110153230	+	0	NA	intron (NM_147150, intron 8 of 9)	intron (NM_147150, intron 8 of 9)	27439	NM_001136562	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
92316	chr17	8131401	8131680	+	0	NA	Intergenic	AluSg|SINE|Alu	-7434	NM_001165967	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
166451	chr3	114153551	114153650	+	0	NA	intron (NM_033663, intron 3 of 7)	MIR|SINE|MIR	25176	NM_001290809	1814		NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
140416	chr2	233106321	233106950	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	46293	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
142590	chr20	5550621	5551100	+	0	NA	intron (NM_019593, intron 19 of 19)	HAL1|LINE|L1	-40858	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
222425	chr8	134684951	134686050	+	0	NA	intron (NM_001289394, intron 1 of 16)	intron (NM_001289394, intron 1 of 16)	11055	NM_001029939	57623		NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
107786	chr18	51129421	51129680	+	0	NA	Intergenic	Intergenic	68131	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
110766	chr19	2389701	2389900	+	0	NA	exon (NM_182973, exon 2 of 18)	exon (NM_182973, exon 2 of 18)	4535	NM_182973	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
177248	chr4	108700621	108700880	+	0	NA	Intergenic	Intergenic	50151	NM_001267818	58505		NM_021227	ENSG00000198856	OSTC	DC2	oligosaccharyltransferase complex non-catalytic subunit	protein-coding
135268	chr2	159774471	159774630	+	0	NA	intron (NM_014880, intron 5 of 5)	MIRb|SINE|MIR	23658	NM_014880	9936		NM_014880	ENSG00000241399	CD302	BIMLEC|CLEC13A|DCL-1|DCL1	CD302 molecule	protein-coding
185606	chr5	131418951	131419650	+	0	NA	Intergenic	AluJo|SINE|Alu	155247	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
129241	chr2	68357851	68358230	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-7242	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
23547	chr1	229268321	229268880	+	0	NA	non-coding (NR_149312, exon 2 of 3)	non-coding (NR_149312, exon 2 of 3)	-2462	NR_073545	5867		NM_004578	ENSG00000168118	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
95889	chr17	38883371	38883530	+	0	NA	intron (NM_001271608, intron 2 of 5)	intron (NM_001271608, intron 2 of 5)	13392	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
17636	chr1	157132751	157132930	+	0	NA	TTS (NM_005240)	TTS (NM_005240)	4478	NR_001560	360155		NR_001560	ENSG00000235700	CYCSP52	HC6|HCP2	CYCS pseudogene 52	pseudo
91881	chr17	7258801	7259000	+	0	NA	exon (NM_015362, exon 8 of 9)	exon (NM_015362, exon 8 of 9)	3578	NM_001307	1366		NM_001307	ENSG00000181885	CLDN7	CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1	claudin 7	protein-coding
182460	chr5	62328301	62328500	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	22194	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
29973	chr10	73731801	73732530	+	0	NA	TTS (NR_048575)	TTS (NR_048575)	1603	NR_048575	2749		NR_048575	ENSG00000291043	GLUD1P3	C10orf102|GLUDP3	glutamate dehydrogenase 1 pseudogene 3	pseudo
34258	chr10	131743221	131743530	+	0	NA	Intergenic	Intergenic	46824	NR_038365	399827		NM_001001677	ENSG00000189275	LINC01164	-	long intergenic non-protein coding RNA 1164	ncRNA
225549	chr9	35833621	35834350	+	0	NA	intron (NM_001363625, intron 1 of 4)	intron (NM_001363625, intron 1 of 4)	4757	NM_001042590	51754		NM_016446	ENSG00000137103	TMEM8B	C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6|NGX6a	transmembrane protein 8B	protein-coding
102034	chr17	74859551	74860070	+	0	NA	promoter-TSS (NR_103735)	promoter-TSS (NR_103735)	74	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
40854	chr11	65061121	65061630	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-2822	NM_005468	10004		NM_005468	ENSG00000168060	NAALADL1	HILAP|I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase like 1	protein-coding
128302	chr2	54632021	54632280	+	0	NA	intron (NM_178313, intron 15 of 30)	intron (NM_178313, intron 15 of 30)	73756	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
133502	chr2	119968651	119968950	+	0	NA	intron (NM_002830, intron 26 of 26)	AluY|SINE|Alu	-44277	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
102301	chr17	75345271	75346530	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	-56451	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
60098	chr13	36814471	36814730	+	0	NA	Intergenic	MER50|LTR|ERV1	-4622	NM_000538	5994		NM_000538	ENSG00000133111	RFXAP	-	regulatory factor X associated protein	protein-coding
42741	chr11	72704071	72704450	+	0	NA	exon (NM_001040118, exon 14 of 35)	exon (NM_001040118, exon 14 of 35)	3786	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
111105	chr19	3204971	3205330	+	0	NA	intron (NM_020170, intron 9 of 14)	intron (NM_020170, intron 9 of 14)	19220	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
61796	chr13	75365651	75366350	+	0	NA	intron (NM_014832, intron 1 of 20)	intron (NM_014832, intron 1 of 20)	116168	NM_001286659	9882		NM_014832	ENSG00000136111	TBC1D4	AS160|NIDDM5	TBC1 domain family member 4	protein-coding
150718	chr21	43736371	43736600	+	0	NA	intron (NM_003681, intron 2 of 10)	L1M4|LINE|L1	-5001	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
110798	chr19	2458301	2458930	+	0	NA	TTS (NR_134931)	TTS (NR_134931)	-1656	NM_032737	84823		NM_032737	ENSG00000176619	LMNB2	EPM9|LAMB2|LMN2|MCPH27	lamin B2	protein-coding
39655	chr11	61587401	61588750	+	0	NA	promoter-TSS (NR_110189)	promoter-TSS (NR_110189)	-419	NR_110189	101927495		NR_110189	ENSG00000250230	LOC101927495	-	uncharacterized LOC101927495	ncRNA
211737	chr7	107169501	107170900	+	0	NA	intron (NM_012257, intron 1 of 10)	intron (NM_012257, intron 1 of 10)	1197	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
175076	chr4	54090901	54092480	+	0	NA	Intergenic	L1PB1|LINE|L1	-8473	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
220429	chr8	100293051	100293500	+	0	NA	intron (NM_001280539, intron 2 of 10)	L1M4a1|LINE|L1	8918	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
126771	chr2	30252571	30253930	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	21716	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
80638	chr16	2991121	2991380	+	0	NA	intron (NR_033861, intron 3 of 4)	intron (NR_033861, intron 3 of 4)	2196	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
171153	chr3	195617701	195617900	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-33860	NM_001647	347		NM_001647	ENSG00000189058	APOD	-	apolipoprotein D	protein-coding
173785	chr4	17584701	17585100	+	0	NA	intron (NM_015907, intron 5 of 12)	intron (NM_015907, intron 5 of 12)	7702	NM_015907	51056		NM_015907	ENSG00000002549	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
8426	chr1	40508171	40509430	+	0	NA	promoter-TSS (NM_001346950)	promoter-TSS (NM_001346950)	81	NM_001346946	64789		NM_022774	ENSG00000164002	EXO5	C1orf176|DEM1|Exo V|hExo5	exonuclease 5	protein-coding
135296	chr2	160224121	160224580	+	0	NA	Intergenic	Intergenic	-24037	NM_001282354	3694		NM_000888	ENSG00000115221	ITGB6	AI1H	integrin subunit beta 6	protein-coding
182791	chr5	68645051	68645150	+	0	NA	Intergenic	Intergenic	352523	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
237134	chrX	106894401	106894600	+	0	NA	Intergenic	Intergenic	-5664	NM_001171092	9075		NM_020384	ENSG00000165376	CLDN2	OAZON|claudin-2	claudin 2	protein-coding
176675	chr4	100458721	100459180	+	0	NA	intron (NM_016242, intron 4 of 11)	intron (NM_016242, intron 4 of 11)	59072	NM_001159694	51705		NM_016242	ENSG00000164035	EMCN	EMCN2|MUC14	endomucin	protein-coding
204533	chr7	4814501	4814700	+	0	NA	intron (NM_018059, intron 9 of 14)	intron (NM_018059, intron 9 of 14)	22850	NR_145804	109623455		NR_145804		SNORD165	-	small nucleolar RNA, C/D box 165	snoRNA
136921	chr2	189764171	189764330	+	0	NA	non-coding (NR_163942, exon 5 of 5)	non-coding (NR_163942, exon 5 of 5)	-1052	NR_148883	64172		NM_022353	ENSG00000128694	OSGEPL1	OSGEPL|Qri7	O-sialoglycoprotein endopeptidase like 1	protein-coding
213528	chr7	139083471	139084130	+	0	NA	exon (NM_024625, exon 3 of 9)	exon (NM_024625, exon 3 of 9)	25920	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
30610	chr10	80195251	80195350	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	9191	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
4950	chr1	23973151	23973880	+	0	NA	intron (NM_001191007, intron 3 of 5)	AluJo|SINE|Alu	6812	NM_001191009	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
57675	chr12	122825801	122826230	+	0	NA	intron (NM_201435, intron 12 of 12)	intron (NM_201435, intron 12 of 12)	-8733	NM_001303099	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
116973	chr19	18873451	18873950	+	0	NA	intron (NM_021267, intron 6 of 7)	AluSx|SINE|Alu	22458	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
44415	chr11	103927651	103927750	+	0	NA	intron (NM_025208, intron 5 of 6)	intron (NM_025208, intron 5 of 6)	77794	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
77184	chr15	80234871	80235030	+	0	NA	intron (NM_001352888, intron 1 of 2)	MIRb|SINE|MIR	17263	NM_001352888	100996492		NM_001352888	ENSG00000259417	CTXND1	LINC01314	cortexin domain containing 1	protein-coding
123681	chr19	55006921	55007380	+	0	NA	Intergenic	LTR7|LTR|ERV1	31114	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
64998	chr14	38120051	38120550	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-87604	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
42978	chr11	73779101	73780500	+	0	NA	Intergenic	Intergenic	-8074	NR_134658	51642		NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48|mL48	mitochondrial ribosomal protein L48	protein-coding
93969	chr17	21574071	21574630	+	0	NA	Intergenic	SST1|Satellite|centr	-22672	NR_160801	339263		NM_001113434	ENSG00000212719	LINC02693	C17orf51	long intergenic non-protein coding RNA 2693	ncRNA
57714	chr12	122868921	122869830	+	0	NA	intron (NM_024667, intron 2 of 3)	L1ME3|LINE|L1	26749	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
53516	chr12	66829551	66830200	+	0	NA	intron (NM_001379351, intron 1 of 22)	MIRb|SINE|MIR	-25606	NM_001379348	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
147338	chr20	58209451	58210450	+	0	NA	Intergenic	Intergenic	18703	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
615	chr1	1317401	1318400	+	0	NA	intron (NM_001256463, intron 2 of 14)	AluY|SINE|Alu	-5334	NR_106785	102465435		NR_106785	ENSG00000283712	MIR6727	hsa-mir-6727	microRNA 6727	ncRNA
196847	chr6	47476321	47476650	+	0	NA	Intergenic	Intergenic	-1304	NM_012120	23607		NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
202237	chr6	156832351	156832450	+	0	NA	intron (NM_017519, intron 2 of 18)	intron (NM_017519, intron 2 of 18)	-52669	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
184822	chr5	111273951	111274250	+	0	NA	intron (NM_001744, intron 1 of 10)	L2a|LINE|L2	49716	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
85643	chr16	55803501	55804100	+	0	NA	intron (NM_001266, intron 12 of 13)	intron (NM_001266, intron 12 of 13)	29296	NM_001266	1066		NM_001266	ENSG00000198848	CES1	ACAT|CE-1|CEH|CES2|HMSE|HMSE1|PCE-1|REH|SES1|TGH|hCE-1	carboxylesterase 1	protein-coding
132239	chr2	102391421	102391780	+	0	NA	intron (NM_001371424, intron 7 of 8)	L1MC5|LINE|L1	-27190	NM_003853	8807		NM_003853	ENSG00000115607	IL18RAP	ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB	interleukin 18 receptor accessory protein	protein-coding
71307	chr14	105340871	105341230	+	0	NA	intron (NM_001100913, intron 1 of 24)	intron (NM_001100913, intron 1 of 24)	-25473	NM_001242787	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
16332	chr1	154262671	154263230	+	0	NA	intron (NM_001375623, intron 24 of 27)	intron (NM_001375623, intron 24 of 27)	3223	NR_145714	109617023		NR_145714	ENSG00000201129	SNORA58B	-	small nucleolar RNA, H/ACA box 58B	snoRNA
54453	chr12	91875171	91876100	+	0	NA	Intergenic	L2c|LINE|L2	266078	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
218639	chr8	56970721	56971250	+	0	NA	intron (NM_017813, intron 3 of 4)	intron (NM_017813, intron 3 of 4)	22882	NM_017813	54928		NM_017813	ENSG00000104331	BPNT2	GPAPP|IMP 3|IMP-3|IMPA3|IMPAD1	3'(2'), 5'-bisphosphate nucleotidase 2	protein-coding
89812	chr16	89558721	89558980	+	0	NA	Intergenic	AluSx|SINE|Alu	-1807	NM_001243131	6137		NM_000977	ENSG00000167526	RPL13	BBC1|D16S444E|D16S44E|L13|SEMDIST|eL13	ribosomal protein L13	protein-coding
113984	chr19	10828101	10828300	+	0	NA	promoter-TSS (NR_106851)	promoter-TSS (NR_106851)	-773	NR_106851	102466737		NR_106851	ENSG00000275640	MIR6793	hsa-mir-6793	microRNA 6793	ncRNA
2684	chr1	10586301	10586500	+	0	NA	intron (NM_004565, intron 3 of 8)	L1ME3B|LINE|L1	111450	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
172128	chr4	1183201	1183400	+	0	NA	intron (NM_001199021, intron 1 of 7)	L1MB3|LINE|L1	-10089	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
187484	chr5	142160501	142160900	+	0	NA	Intergenic	MIRb|SINE|MIR	51921	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
20555	chr1	198711051	198711350	+	0	NA	intron (NM_002838, intron 11 of 32)	L1ME2|LINE|L1	72160	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
172712	chr4	2797471	2798320	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	4810	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
151977	chr22	19147201	19147930	+	0	NA	3' UTR (NM_005315, exon 3 of 3)	3' UTR (NM_005315, exon 3 of 3)	2727	NM_005315	2928		NM_005315	ENSG00000063515	GSC2	GSCL	goosecoid homeobox 2	protein-coding
200531	chr6	136248271	136248630	+	0	NA	intron (NM_001318738, intron 2 of 8)	THE1B|LTR|ERVL-MaLR	1861	NM_001318738	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
103154	chr17	77419601	77420300	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	14873	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
158338	chr22	50450701	50451450	+	0	NA	intron (NM_002972, intron 36 of 40)	AluJo|SINE|Alu	23960	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
110030	chr19	1455201	1456330	+	0	NA	intron (NM_005883, intron 6 of 14)	CpG-13051	2781	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
66770	chr14	64543421	64543680	+	0	NA	TTS (NM_021979)	TTS (NM_021979)	3082	NM_021979	3306		NM_021979	ENSG00000126803	HSPA2	HSP70-2|HSP70-3	heat shock protein family A (Hsp70) member 2	protein-coding
120350	chr19	43584001	43584780	+	0	NA	TTS (NM_001007561)	TTS (NM_001007561)	3784	NM_001321124	390940		NM_001193621	ENSG00000234465	PINLYP	-	phospholipase A2 inhibitor and LY6/PLAUR domain containing	protein-coding
124998	chr2	9476171	9476330	+	0	NA	intron (NM_001320863, intron 2 of 5)	intron (NM_001320863, intron 2 of 5)	1195	NM_001320858	285148		NM_001039613	ENSG00000134330	IAH1	-	isoamyl acetate hydrolyzing esterase 1 (putative)	protein-coding
214889	chr7	151412821	151413280	+	0	NA	TTS (NR_034012)	TTS (NR_034012)	-2338	NM_001284261	349136		NM_198285	ENSG00000187260	WDR86	-	WD repeat domain 86	protein-coding
12489	chr1	107950171	107951130	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	-13793	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
23162	chr1	226734421	226734980	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	4475	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
31668	chr10	97425471	97427240	+	0	NA	promoter-TSS (NR_157582)	promoter-TSS (NR_157582)	164	NM_002629	5223		NM_002629	ENSG00000171314	PGAM1	HEL-S-35|PGAM-B|PGAMA	phosphoglycerate mutase 1	protein-coding
189613	chr5	175969701	175969900	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1485	NM_032361	84321		NM_032361	ENSG00000051596	THOC3	THO3|hTREX45	THO complex subunit 3	protein-coding
200816	chr6	137926121	137926600	+	0	NA	Intergenic	Intergenic	19440	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
238785	chrX	154372321	154373830	+	0	NA	intron (NM_001110556, intron 1 of 47)	intron (NM_001110556, intron 1 of 47)	1559	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
142268	chr20	3172871	3174530	+	0	NA	promoter-TSS (NM_001365618)	promoter-TSS (NM_001365618)	-151	NM_001367609	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
8165	chr1	39514601	39515050	+	0	NA	promoter-TSS (NR_132962)	promoter-TSS (NR_132962)	-41	NR_132962	192217		NR_132962	ENSG00000237624	OXCT2P1	OXCT2P	3-oxoacid CoA-transferase 2 pseudogene 1	pseudo
192937	chr6	27762071	27762230	+	0	NA	intron (NR_038929, intron 1 of 2)	AluY|SINE|Alu	406	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
134316	chr2	136050201	136050400	+	0	NA	Intergenic	Intergenic	-64616	NM_001293312	1615		NM_001349	ENSG00000115866	DARS1	DARS|HBSL|aspRS	aspartyl-tRNA synthetase 1	protein-coding
87137	chr16	69130771	69131600	+	0	NA	intron (NM_001002847, intron 1 of 2)	intron (NM_001002847, intron 1 of 2)	974	NM_001366604	113455421		NM_001002847	ENSG00000286140	DERPC	-	DERPC proline and glycine rich nuclear protein	protein-coding
137369	chr2	196172971	196173550	+	0	NA	Intergenic	Intergenic	-1682	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
24247	chr1	236279171	236280080	+	0	NA	intron (NM_019891, intron 1 of 15)	AluSx1|SINE|Alu	2333	NM_019891	56605		NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding
175349	chr4	69170571	69170800	+	0	NA	Intergenic	Intergenic	-11415	NR_136191	105377267		NR_136191	ENSG00000250696	LOC105377267	-	uncharacterized LOC105377267	ncRNA
207367	chr7	44103371	44103530	+	0	NA	promoter-TSS (NM_001129)	promoter-TSS (NM_001129)	-895	NM_001129	165		NM_001129	ENSG00000106624	AEBP1	ACLP	AE binding protein 1	protein-coding
210387	chr7	99912851	99913500	+	0	NA	intron (NM_033091, intron 1 of 5)	intron (NM_033091, intron 1 of 5)	6355	NM_033091	89122		NM_033017	ENSG00000146833	TRIM4	RNF87	tripartite motif containing 4	protein-coding
216168	chr8	11746271	11747000	+	0	NA	intron (NM_002052, intron 2 of 6)	intron (NM_002052, intron 2 of 6)	-14621	NM_001031839	606553		NM_001031839		LINC02905	C8orf49|G4DM	long intergenic non-protein coding RNA 2905	ncRNA
231715	chr9	131742651	131743150	+	0	NA	Intergenic	Intergenic	-2824	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
165747	chr3	105739821	105740500	+	0	NA	intron (NM_001321811, intron 6 of 16)	intron (NM_001321811, intron 6 of 16)	127431	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
135590	chr2	166539371	166539560	+	0	NA	Intergenic	Intergenic	-45216	NM_002976	6332		NM_002976	ENSG00000136546	SCN7A	NaG|Nav2.1|Nav2.2|SCN6A	sodium voltage-gated channel alpha subunit 7	protein-coding
229844	chr9	126082701	126082930	+	0	NA	Intergenic	Intergenic	193100	NR_121584	101929116		NR_121584	ENSG00000288537	LOC101929116	-	uncharacterized LOC101929116	ncRNA
73269	chr15	41839251	41839550	+	0	NA	intron (NM_001114633, intron 1 of 19)	intron (NM_001114633, intron 1 of 19)	587	NM_001114633	100137049		NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2 group IVB	protein-coding
186667	chr5	138642921	138643600	+	0	NA	Intergenic	Intergenic	-67859	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
105403	chr17	82770451	82771150	+	0	NA	intron (NM_005993, intron 5 of 38)	AluSg7|SINE|Alu	18735	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
189714	chr5	176527171	176527800	+	0	NA	3' UTR (NM_014901, exon 11 of 11)	3' UTR (NM_014901, exon 11 of 11)	9917	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
104005	chr17	80102851	80102950	+	0	NA	TTS (NR_134848)	TTS (NR_134848)	1319	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
10872	chr1	78005901	78006680	+	0	NA	intron (NM_001317103, intron 1 of 1)	intron (NM_001317103, intron 1 of 1)	1351	NM_007034	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
108488	chr18	71784701	71784900	+	0	NA	Intergenic	MER66D|LTR|ERV1	-2574	NR_126324	102724913		NR_126324	ENSG00000265352	LINC01899	-	long intergenic non-protein coding RNA 1899	ncRNA
101685	chr17	68399821	68400100	+	0	NA	intron (NM_001352901, intron 10 of 11)	intron (NM_001352901, intron 10 of 11)	-13663	NM_001278433	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
183024	chr5	73135501	73135700	+	0	NA	intron (NR_134252, intron 1 of 1)	intron (NR_134252, intron 1 of 1)	14992	NR_134252	105379030		NR_134252	ENSG00000251599	LOC105379030	-	uncharacterized LOC105379030	ncRNA
65182	chr14	49617871	49618450	+	0	NA	TTS (NM_001001)	TTS (NM_001001)	2466	NM_001001	6166		NM_001001	ENSG00000165502	RPL36AL	RPL36A|RPL36AP42|RPL36A_18_1363	ribosomal protein L36a like	protein-coding
150122	chr21	37497001	37497250	+	0	NA	intron (NM_101395, intron 10 of 12)	intron (NM_101395, intron 10 of 12)	76826	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
93166	chr17	17784921	17785780	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	-5821	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
232803	chr9	136711601	136712680	+	0	NA	promoter-TSS (NM_152421)	promoter-TSS (NM_152421)	-432	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
101418	chr17	67394551	67394650	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	17319	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
29510	chr10	70618221	70618950	+	0	NA	Intergenic	L2c|LINE|L2	-15797	NM_005041	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
224148	chr9	4798251	4798500	+	0	NA	intron (NM_001286699, intron 1 of 6)	MIRc|SINE|MIR	5431	NM_005772	10171		NM_005772	ENSG00000120158	RCL1	RNAC|RPCL1	RNA terminal phosphate cyclase like 1	protein-coding
108615	chr18	75479021	75479280	+	0	NA	Intergenic	Intergenic	-51447	NM_001303482	284274		NM_001037331	ENSG00000206026	SMIM21	C18orf62	small integral membrane protein 21	protein-coding
68346	chr14	77618301	77618900	+	0	NA	Intergenic	MIRc|SINE|MIR	-1963	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
193504	chr6	30574171	30575180	+	0	NA	intron (NM_001090, intron 1 of 23).3	intron (NM_001090, intron 1 of 23).3	3233	NM_001025091	23		NM_001090	ENSG00000204574	ABCF1	ABC27|ABC50	ATP binding cassette subfamily F member 1	protein-coding
86867	chr16	67946701	67947100	+	0	NA	intron (NM_001145964, intron 17 of 23)	intron (NM_001145964, intron 17 of 23)	-2780	NM_000229	3931		NM_000229	ENSG00000213398	LCAT	-	lecithin-cholesterol acyltransferase	protein-coding
111852	chr19	4589671	4589900	+	0	NA	Intergenic	Intergenic	-30101	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
31377	chr10	93907251	93907350	+	0	NA	non-coding (NR_144335, exon 3 of 3)	non-coding (NR_144335, exon 3 of 3)	13322	NR_144336	159371		NM_153226	ENSG00000176273	SLC35G1	C10orf60|POST|TMEM20	solute carrier family 35 member G1	protein-coding
61015	chr13	48144451	48145100	+	0	NA	Intergenic	Intergenic	-49634	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
79082	chr16	172671	173180	+	0	NA	promoter-TSS (NM_000517)	promoter-TSS (NM_000517)	49	NM_000517	3040		NM_000517	ENSG00000188536	HBA2	ECYT7|HBA-T2|HBH	hemoglobin subunit alpha 2	protein-coding
21454	chr1	205493221	205493530	+	0	NA	Intergenic	Intergenic	-11294	NM_002596	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
227012	chr9	83714271	83714680	+	0	NA	TTS (NR_135839)	TTS (NR_135839)	6144	NR_135840	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
70843	chr14	103698401	103698600	+	0	NA	3' UTR (NM_005432, exon 10 of 10)	3' UTR (NM_005432, exon 10 of 10)	16951	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
162528	chr3	48599721	48599980	+	0	NA	intron (NM_003365, intron 11 of 12)	intron (NM_003365, intron 11 of 12)	-4521	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
54216	chr12	79922801	79923000	+	0	NA	intron (NM_001143885, intron 2 of 25)	intron (NM_001143885, intron 2 of 25)	-8989	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
64359	chr14	24096651	24096950	+	0	NA	intron (NM_001291556, intron 2 of 9).2	intron (NM_001291556, intron 2 of 9).2	-1670	NM_001354769	4901		NM_006177	ENSG00000129535	NRL	D14S46E|NRL-MAF|RP27	neural retina leucine zipper	protein-coding
78220	chr15	90645201	90646080	+	0	NA	TTS (NM_022769)	TTS (NM_022769)	-14594	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
116946	chr19	18851201	18851400	+	0	NA	intron (NM_001297549, intron 5 of 23)	intron (NM_001297549, intron 5 of 23)	19341	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
46673	chr11	128727771	128728230	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-31977	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
38410	chr11	44978901	44979300	+	0	NA	Intergenic	Intergenic	5198	NR_026681	221122		NR_026681	ENSG00000254654	LINC02685	-	long intergenic non-protein coding RNA 2685	ncRNA
94789	chr17	31061621	31061880	+	0	NA	Intergenic	Intergenic	-2641	NR_146737	646030		NR_146737		LOC646030	LRRC37	leucine rich repeat containing 37B pseudogene	pseudo
26140	chr10	13795371	13796430	+	0	NA	intron (NM_018027, intron 5 of 24)	intron (NM_018027, intron 5 of 24)	-88333	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
19246	chr1	172662271	172663700	+	0	NA	intron (NM_000639, intron 2 of 3)	intron (NM_000639, intron 2 of 3)	3882	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
129829	chr2	72579671	72579830	+	0	NA	intron (NR_135773, intron 6 of 21)	intron (NR_135773, intron 6 of 21)	246283	NM_001321730	23233		NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2|SEMDJL3	exocyst complex component 6B	protein-coding
92652	chr17	10605571	10605730	+	0	NA	intron (NR_125367, intron 6 of 10)	intron (NR_125367, intron 6 of 10)	51659	NM_002470	4621		NM_002470	ENSG00000109063	MYH3	CPSFS1A|CPSFS1B|CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE	myosin heavy chain 3	protein-coding
183942	chr5	87432501	87432700	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-19567	NM_001363539	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
364	chr1	1025001	1026450	+	0	NA	intron (NM_198576, intron 2 of 35)	intron (NM_198576, intron 2 of 35)	5605	NM_198576	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
56754	chr12	120150751	120151250	+	0	NA	intron (NM_006836, intron 34 of 57)	intron (NM_006836, intron 34 of 57)	4499	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
67629	chr14	73025421	73025930	+	0	NA	intron (NM_021260, intron 1 of 11)	AluSx1|SINE|Alu	1431	NM_001281734	53349		NM_021260	ENSG00000165861	ZFYVE1	DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1	zinc finger FYVE-type containing 1	protein-coding
159514	chr3	14406951	14407830	+	0	NA	intron (NR_103507, intron 1 of 13)	L1ME2|LINE|L1	4784	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
119594	chr19	40737571	40737730	+	0	NA	intron (NM_025194, intron 5 of 6)	intron (NM_025194, intron 5 of 6)	12827	NR_148549	284325		NM_198476	ENSG00000188493	ACTMAP	C19orf54	actin maturation protease	protein-coding
106822	chr18	23999551	23999950	+	0	NA	intron (NR_110796, intron 5 of 5)	intron (NR_110796, intron 5 of 5)	6863	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
150297	chr21	41994871	41995230	+	0	NA	intron (NM_020727, intron 1 of 1)	THE1B|LTR|ERVL-MaLR	-14144	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
110217	chr19	1754471	1755150	+	0	NA	exon (NM_001080488, exon 1 of 2)	exon (NM_001080488, exon 1 of 2)	1304	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
21232	chr1	204198751	204199050	+	0	NA	intron (NM_198447, intron 4 of 4)	MIR|SINE|MIR	-2409	NM_002256	3814		NM_002256	ENSG00000170498	KISS1	HH13|KiSS-1	KiSS-1 metastasis suppressor	protein-coding
217700	chr8	30131451	30131550	+	0	NA	TTS (NM_001100916)	TTS (NM_001100916)	13165	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
234286	chrX	13658671	13659280	+	0	NA	intron (NM_001297564, intron 2 of 2)	intron (NM_001297564, intron 2 of 2)	5834	NM_001297563	170082		NM_152634	ENSG00000176896	TCEANC	TCEANC1	transcription elongation factor A N-terminal and central domain containing	protein-coding
145239	chr20	38929801	38930680	+	0	NA	intron (NM_030919, intron 1 of 3)	intron (NM_030919, intron 1 of 3)	3823	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
63607	chr14	20607751	20608330	+	0	NA	TTS (NR_122043)	TTS (NR_122043)	-17217	NM_001024822	493901		NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
202163	chr6	155306071	155306530	+	0	NA	intron (NR_146725, intron 2 of 8)	L1ME1|LINE|L1	8184	NM_001350501	51106		NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
164348	chr3	58030451	58030750	+	0	NA	intron (NM_001164319, intron 1 of 44)	AluJb|SINE|Alu	22178	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
160656	chr3	31635601	31636130	+	0	NA	intron (NM_178862, intron 15 of 15)	intron (NM_178862, intron 15 of 15)	-68348	NR_049771	100874206		NR_049771	ENSG00000232490	OSBPL10-AS1	-	OSBPL10 antisense RNA 1	ncRNA
196041	chr6	42045451	42046230	+	0	NA	intron (NM_001287434, intron 1 of 4)	intron (NM_001287434, intron 1 of 4)	3054	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
69031	chr14	91825021	91825280	+	0	NA	intron (NM_001128596, intron 1 of 11)	AluSg7|SINE|Alu	11305	NM_152332	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
138111	chr2	202280121	202281080	+	0	NA	intron (NM_015934, intron 3 of 14)	AluSx|SINE|Alu	2487	NR_145774	109616995		NR_145774	ENSG00000212309	SNORD70B	-	small nucleolar RNA, C/D box 70B	snoRNA
75838	chr15	69465271	69465430	+	0	NA	Intergenic	Intergenic	12532	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
146611	chr20	50150921	50151180	+	0	NA	intron (NM_199129, intron 1 of 5)	L2a|LINE|L2	2673	NM_001162505	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
33558	chr10	119315121	119316230	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	-62297	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
210014	chr7	93231651	93232780	+	0	NA	promoter-TSS (NM_017667)	promoter-TSS (NM_017667)	-17	NM_001346642	253012		NM_198151	ENSG00000188175	HEPACAM2	MIKI	HEPACAM family member 2	protein-coding
25798	chr10	11181471	11181630	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	16520	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
22656	chr1	223765901	223766100	+	0	NA	intron (NM_001748, intron 15 of 20)	intron (NM_001748, intron 15 of 20)	53461	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
127919	chr2	46351451	46353050	+	0	NA	intron (NM_001430, intron 2 of 15)	L2b|LINE|L2	41917	NR_146999	105374582		NR_146999	ENSG00000228100	LINC01820	-	long intergenic non-protein coding RNA 1820	ncRNA
161553	chr3	42661571	42661730	+	0	NA	intron (NM_145166, intron 3 of 5)	intron (NM_145166, intron 3 of 5)	-7262	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
124966	chr2	8693251	8693930	+	0	NA	Intergenic	Intergenic	11534	NM_002166	3398		NM_002166	ENSG00000115738	ID2	GIG8|ID2A|ID2H|bHLHb26	inhibitor of DNA binding 2	protein-coding
44602	chr11	108497171	108498100	+	0	NA	intron (NM_153705, intron 1 of 7)	intron (NM_153705, intron 1 of 7)	749	NM_001363502	143888		NM_153705	ENSG00000178202	POGLUT3	KDELC2	protein O-glucosyltransferase 3	protein-coding
193165	chr6	29692771	29693080	+	0	NA	Intergenic	LTR2|LTR|ERV1	-11773	NM_001109809	346171		NM_001109809	ENSG00000204644	ZFP57	C6orf40|TNDM1|ZNF698|bA145L22|bA145L22.2	ZFP57 zinc finger protein	protein-coding
131181	chr2	94641651	94641830	+	0	NA	Intergenic	Intergenic	54429	NM_001382497	100509620		NM_001382497	ENSG00000259916	AQP7B	-	aquaporin 7B	protein-coding
71139	chr14	104982071	104982700	+	0	NA	Intergenic	Intergenic	-3403	NM_174891	122616		NM_174891	ENSG00000140104	CLBA1	C14orf79	clathrin binding box of aftiphilin containing 1	protein-coding
160906	chr3	33883471	33884030	+	0	NA	Intergenic	Intergenic	85120	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
75131	chr15	64574921	64575180	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	114472	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
142296	chr20	3246801	3247200	+	0	NA	Intergenic	AluJb|SINE|Alu	-7810	NR_135000	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
8356	chr1	40257251	40258530	+	0	NA	promoter-TSS (NM_005857)	promoter-TSS (NM_005857)	-346	NM_005857	10269		NM_005857	ENSG00000084073	ZMPSTE24	FACE-1|FACE1|HGPS|PRO1|RSDM1|STE24|Ste24p	zinc metallopeptidase STE24	protein-coding
77745	chr15	85747301	85747700	+	0	NA	3' UTR (NM_001270546, exon 29 of 29)	3' UTR (NM_001270546, exon 29 of 29)	11225	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
51362	chr12	51814001	51815080	+	0	NA	Intergenic	CpG	17377	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
116690	chr19	18422351	18423980	+	0	NA	intron (NM_032627, intron 1 of 17)	intron (NM_032627, intron 1 of 17)	3767	NM_032627	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
174445	chr4	39703071	39703430	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluJr|SINE|Alu	5114	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
156610	chr22	41565421	41565980	+	0	NA	intron (NM_014460, intron 1 of 3)	intron (NM_014460, intron 1 of 3)	4690	NM_014460	27254		NM_014460	ENSG00000172346	CSDC2	PIPPIN|dJ347H13.2	cold shock domain containing C2	protein-coding
137063	chr2	190898401	190899180	+	0	NA	intron (NM_014905, intron 3 of 17)	AluSp|SINE|Alu	17969	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
175043	chr4	52876121	52876380	+	0	NA	intron (NM_152540, intron 8 of 8)	MIRb|SINE|MIR	13933	NM_023940	65997		NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding
88438	chr16	84767901	84768380	+	0	NA	intron (NM_005153, intron 10 of 13)	intron (NM_005153, intron 10 of 13)	-51845	NM_031476	83716		NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2|LGL1	cysteine rich secretory protein LCCL domain containing 2	protein-coding
216196	chr8	11851551	11851850	+	0	NA	intron (NM_001384728, intron 4 of 10)	intron (NM_001384728, intron 4 of 10)	16387	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
91236	chr17	3942001	3942400	+	0	NA	intron (NM_174953, intron 12 of 22)	intron (NM_174953, intron 12 of 22)	22237	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
89691	chr16	89389801	89390630	+	0	NA	intron (NR_045839, intron 2 of 9)	CpG	-40703	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
118567	chr19	36213871	36215600	+	0	NA	promoter-TSS (NM_001099638)	promoter-TSS (NM_001099638)	-70	NM_152477	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
40565	chr11	64345701	64345900	+	0	NA	intron (NM_032251, intron 14 of 26)	AluSx1|SINE|Alu	-3896	NR_106977	102466815		NR_106977	ENSG00000278359	MIR7155	hsa-mir-7155	microRNA 7155	ncRNA
16302	chr1	154174121	154174380	+	0	NA	intron (NM_001278188, intron 1 of 6)	AluSx1|SINE|Alu	3954	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
92917	chr17	16536601	16537950	+	0	NA	Intergenic	Intergenic	31929	NM_020653	57336		NM_020653	ENSG00000141040	ZNF287	ZKSCAN13|ZSCAN45	zinc finger protein 287	protein-coding
151808	chr22	18214321	18215680	+	0	NA	Intergenic	L1M4|LINE|L1	-9091	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
15190	chr1	149174721	149175200	+	0	NA	Intergenic	Intergenic	26186	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
71337	chr14	105421621	105422530	+	0	NA	intron (NM_001203258, intron 1 of 20)	intron (NM_001203258, intron 1 of 20)	2248	NM_001203258	9112		NM_004689	ENSG00000182979	MTA1	-	metastasis associated 1	protein-coding
9249	chr1	46184021	46184480	+	0	NA	exon (NM_005727, exon 4 of 9)	exon (NM_005727, exon 4 of 9)	-7762	NM_001303427	110117499		NM_001303427	ENSG00000278139	P3R3URF-PIK3R3	LOC110117498-PIK3R3	P3R3URF-PIK3R3 readthrough	protein-coding
16971	chr1	155951121	155951380	+	0	NA	promoter-TSS (NR_106796)	promoter-TSS (NR_106796)	86	NR_106796	102465442		NR_106796	ENSG00000277817	MIR6738	hsa-mir-6738	microRNA 6738	ncRNA
147038	chr20	53622521	53622900	+	0	NA	intron (NR_134576, intron 2 of 2)	MIRc|SINE|MIR	14356	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
228659	chr9	107281401	107281600	+	0	NA	Intergenic	Intergenic	-1779	NM_002874	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
43152	chr11	75325971	75326850	+	0	NA	intron (NM_020251, intron 1 of 14)	MIR|SINE|MIR	8776	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
237101	chrX	104122671	104123200	+	0	NA	non-coding (NR_039980, exon 1 of 1)	non-coding (NR_039980, exon 1 of 1)	1697	NR_039980	286437		NR_039980		LOC286437	-	uncharacterized LOC286437	ncRNA
40590	chr11	64448301	64449200	+	0	NA	promoter-TSS (NR_073177)	promoter-TSS (NR_073177)	-307	NR_073177	100996455		NR_073177	ENSG00000181908	LINC02724	-	long intergenic non-protein coding RNA 2724	ncRNA
102280	chr17	75314821	75315080	+	0	NA	Intergenic	Intergenic	-25501	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
155813	chr22	39317401	39318200	+	0	NA	promoter-TSS (NR_000026)	promoter-TSS (NR_000026)	-904	NR_000026	116936		NR_000026		SNORD139	RNU86|U82|U86	small nucleolar RNA, C/D box 139	snoRNA
152484	chr22	20857571	20859650	+	0	NA	promoter-TSS (NM_004782)	promoter-TSS (NM_004782)	201	NM_058004	5297		NM_002650	ENSG00000241973	PI4KA	GIDID2|PI4K-ALPHA|PIK4CA|PMGYCHA|SPG84|pi4K230	phosphatidylinositol 4-kinase alpha	protein-coding
115893	chr19	16582951	16583050	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-10585	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
7412	chr1	32951821	32952080	+	0	NA	intron (NM_001127361, intron 1 of 8)	AluSx1|SINE|Alu	12859	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
15165	chr1	148975701	148976130	+	0	NA	intron (NM_001198834, intron 17 of 43)	intron (NM_001198834, intron 17 of 43)	23458	NM_001350520	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
4953	chr1	23975371	23976000	+	0	NA	intron (NM_001191007, intron 2 of 5)	intron (NM_001191007, intron 2 of 5)	4642	NM_001191009	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
169625	chr3	171280071	171280300	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-173426	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
234663	chrX	20143501	20144000	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-1912	NM_001412	1964		NM_001412	ENSG00000173674	EIF1AX	EIF1A|EIF1AP1|EIF4C|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A X-linked	protein-coding
228909	chr9	113061301	113061830	+	0	NA	Intergenic	Intergenic	-4841	NM_003408	7539		NM_003408	ENSG00000136866	ZFP37	ZNF906|zfp-37	ZFP37 zinc finger protein	protein-coding
185111	chr5	119276551	119276650	+	0	NA	intron (NM_001077654, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	7841	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
14373	chr1	144146721	144146980	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	101355	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
124612	chr2	1047571	1047750	+	0	NA	intron (NM_018968, intron 1 of 16)	L1PA15|LINE|L1	-96268	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
221757	chr8	127795201	127796830	+	0	NA	promoter-TSS (NR_031609)	promoter-TSS (NR_031609)	53	NR_031609	100302185		NR_031609	ENSG00000283710	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
83926	chr16	29043321	29043650	+	0	NA	Intergenic	Intergenic	-31357	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
175376	chr4	70676651	70676950	+	0	NA	Intergenic	Intergenic	-10292	NM_144646	3512		NM_144646	ENSG00000132465	JCHAIN	IGCJ|IGJ|JCH	joining chain of multimeric IgA and IgM	protein-coding
236466	chrX	71588951	71589450	+	0	NA	intron (NM_052957, intron 2 of 12)	intron (NM_052957, intron 2 of 12)	11176	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
167728	chr3	131028521	131028780	+	0	NA	intron (NM_145910, intron 2 of 14)	AluY|SINE|Alu	922	NM_001321223	79858		NM_024800	ENSG00000114670	NEK11	-	NIMA related kinase 11	protein-coding
80608	chr16	2956021	2956780	+	0	NA	Intergenic	Intergenic	-7875	NM_001253726	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
38858	chr11	47336451	47336900	+	0	NA	intron (NM_000256, intron 24 of 33)	intron (NM_000256, intron 24 of 33)	16027	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
173100	chr4	6329271	6329880	+	0	NA	intron (NM_001206995, intron 8 of 9)	intron (NM_001206995, intron 8 of 9)	52293	NM_181876	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
148460	chr20	64031001	64031550	+	0	NA	intron (NM_012469, intron 19 of 20)	intron (NM_012469, intron 19 of 20)	-2452	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
7546	chr1	34977121	34977380	+	0	NA	non-coding (NR_037869, exon 3 of 3)	non-coding (NR_037869, exon 3 of 3)	1456	NR_037869	653160		NR_037869	ENSG00000293382	GPR199P	-	G protein-coupled receptor 199, pseudogene	ncRNA
14425	chr1	144367001	144367200	+	0	NA	Intergenic	Intergenic	6559	NM_001164261	645142		NM_001164261	ENSG00000289549	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding
16748	chr1	155306221	155306700	+	0	NA	Intergenic	Intergenic	-2288	NM_001242825	2224		NM_002004	ENSG00000160752	FDPS	FPPS|FPS|POROK9	farnesyl diphosphate synthase	protein-coding
158790	chr3	9646051	9646350	+	0	NA	Intergenic	AluY|SINE|Alu	-3305	NM_001077526	64419		NM_022485	ENSG00000163719	MTMR14	C3orf29	myotubularin related protein 14	protein-coding
118710	chr19	38222471	38223330	+	0	NA	intron (NM_001363579, intron 1 of 11)	intron (NM_001363579, intron 1 of 11)	1322	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
234764	chrX	23773071	23773980	+	0	NA	Intergenic	Intergenic	-9633	NR_027783	6303		NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
148791	chr21	8228011	8231600	+	0	NA	intron (NR_003287, intron 1 of 2)	HERVIP10FH-int|LTR|ERV1	15917	NR_146148	109864282		NR_146148		RNA28SN2	-	RNA, 28S ribosomal N2	rRNA
8886	chr1	43705551	43706230	+	0	NA	TTS (NM_014663)	TTS (NM_014663)	1451	NR_033827	100132774		NR_033827		KDM4A-AS1	-	KDM4A antisense RNA 1	ncRNA
59593	chr13	27573301	27573500	+	0	NA	intron (NM_153371, intron 2 of 9)	L1M4|LINE|L1	47129	NM_153371	222484		NM_153371	ENSG00000139517	LNX2	PDZRN1	ligand of numb-protein X 2	protein-coding
158461	chr22	50670671	50671250	+	0	NA	Intergenic	L2b|LINE|L2	-1863	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
102001	chr17	74770321	74771050	+	0	NA	non-coding (NR_130954, exon 6 of 6)	non-coding (NR_130954, exon 6 of 6)	5660	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
128002	chr2	46986621	46987480	+	0	NA	intron (NM_020458, intron 5 of 19)	intron (NM_020458, intron 5 of 19)	-45195	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
212500	chr7	128654121	128654830	+	0	NA	non-coding (NR_024368, exon 5 of 5)	non-coding (NR_024368, exon 5 of 5)	13234	NR_024368	402483		NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
230152	chr9	127753221	127753480	+	0	NA	intron (NM_170600, intron 3 of 11)	L2b|LINE|L2	1932	NM_001142534	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
56274	chr12	112107621	112109000	+	0	NA	intron (NM_024953, intron 1 of 23)	intron (NM_024953, intron 1 of 23)	473	NM_024953	80018		NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N-alpha-acetyltransferase 25, NatB auxiliary subunit	protein-coding
102334	chr17	75426101	75426790	+	0	NA	Intergenic	Intergenic	20376	NR_037449	100500841		NR_037449	ENSG00000264511	MIR3678	mir-3678	microRNA 3678	ncRNA
111780	chr19	4435001	4435200	+	0	NA	intron (NM_005483, intron 13 of 14)	AluYc|SINE|Alu	-10878	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
38151	chr11	35616251	35616650	+	0	NA	Intergenic	Intergenic	-2010	NM_014344	24147		NM_014344	ENSG00000179431	FJX1	-	four-jointed box kinase 1	protein-coding
64157	chr14	22913121	22913450	+	0	NA	intron (NM_001352763, intron 1 of 14)	AluY|SINE|Alu	5864	NM_001352765	55147		NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding
225270	chr9	34385871	34386230	+	0	NA	intron (NM_032596, intron 1 of 6)	intron (NM_032596, intron 1 of 6)	-4461	NM_147168	84688		NM_032596	ENSG00000164972	SPMIP6	C9orf24|CBE1|NYD-SP22|SMRP1|bA573M23.4	sperm microtubule inner protein 6	protein-coding
17606	chr1	156897901	156898600	+	0	NA	intron (NM_001080471, intron 1 of 22)	intron (NM_001080471, intron 1 of 22)	4532	NM_001353683	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
165592	chr3	101636171	101636950	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-39870	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
218734	chr8	58790421	58791680	+	0	NA	Intergenic	Intergenic	-131197	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
171159	chr3	195626301	195626880	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	25569	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
41464	chr11	66125671	66126180	+	0	NA	intron (NM_018026, intron 1 of 23)	AluSz|SINE|Alu	55653	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
98043	chr17	45434951	45435800	+	0	NA	TTS (NR_027782)	TTS (NR_027782)	-2505	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
74342	chr15	58568321	58568580	+	0	NA	intron (NM_000236, intron 8 of 8)	intron (NM_000236, intron 8 of 8)	-69715	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
220423	chr8	100288751	100289380	+	0	NA	intron (NM_001280539, intron 2 of 10)	AluY|SINE|Alu	13128	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
207605	chr7	44974871	44975550	+	0	NA	exon (NM_033054, exon 5 of 22)	exon (NM_033054, exon 5 of 22)	3805	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
36990	chr11	11870101	11870650	+	0	NA	intron (NM_001372101, intron 1 of 26)	L1MD1|LINE|L1	28403	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
1479	chr1	2700771	2701180	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-67959	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
35171	chr11	773921	774380	+	0	NA	intron (NM_001318818, intron 1 of 6)	intron (NM_001318818, intron 1 of 6)	3337	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
236498	chrX	71765721	71765980	+	0	NA	intron (NR_165034, intron 1 of 4).2	intron (NR_165034, intron 1 of 4).2	633	NR_165034	100132994		NM_001145139	ENSG00000215113	CXorf49B	CXorf49	chromosome X open reading frame 49B	protein-coding
71906	chr15	22744921	22745180	+	0	NA	Intergenic	Intergenic	-12807	NR_040057	283683		NR_040057	ENSG00000274253	LOC283683	-	uncharacterized LOC283683	ncRNA
31179	chr10	91190001	91190400	+	0	NA	intron (NM_001257101, intron 1 of 9)	MLT1A0|LTR|ERVL-MaLR	27188	NM_001257101	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
225543	chr9	35818321	35818980	+	0	NA	intron (NR_052026, intron 7 of 7)	intron (NR_052026, intron 7 of 7)	-3608	NM_032593	84681		NM_032593	ENSG00000137133	HINT2	HIT-17	histidine triad nucleotide binding protein 2	protein-coding
216072	chr8	10630071	10631030	+	0	NA	intron (NM_178857, intron 1 of 3)	intron (NM_178857, intron 1 of 3)	24593	NM_178857	94137		NM_178857	ENSG00000183638	RP1L1	DCDC4B|OCMD|RP88	RP1 like 1	protein-coding
81492	chr16	8944201	8945200	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	4954	NR_135826	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
122856	chr19	50481151	50481780	+	0	NA	intron (NM_206538, intron 6 of 6)	intron (NM_206538, intron 6 of 6)	-4617	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
202310	chr6	157271151	157272050	+	0	NA	Intergenic	Intergenic	51919	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
207955	chr7	54773871	54774500	+	0	NA	intron (NR_110040, intron 1 of 2)	intron (NR_110040, intron 1 of 2)	14872	NR_110040	100996654		NR_110040	ENSG00000234707	SEC61G-DT	-	SEC61G divergent transcript	ncRNA
163206	chr3	50237401	50239350	+	0	NA	intron (NM_001282618, intron 1 of 7)	intron (NM_001282618, intron 1 of 7)	2171	NM_001282618	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
188590	chr5	157168371	157168530	+	0	NA	Intergenic	AluSz|SINE|Alu	-2186	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
139405	chr2	222423551	222423960	+	0	NA	promoter-TSS (NM_001320834)	promoter-TSS (NM_001320834)	-233	NM_001320834	130367		NM_152386	ENSG00000163082	SGPP2	SPP2|SPPase2	sphingosine-1-phosphate phosphatase 2	protein-coding
36965	chr11	11416671	11416830	+	0	NA	intron (NM_001363464, intron 3 of 9)	intron (NM_001363464, intron 3 of 9)	-63500	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
35878	chr11	2394551	2395300	+	0	NA	intron (NM_004356, intron 3 of 7)	intron (NM_004356, intron 3 of 7)	-5825	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
75720	chr15	68155051	68155150	+	0	NA	intron (NM_001320687, intron 8 of 14)	intron (NM_001320687, intron 8 of 14)	50232	NM_033429	91860		NM_033429	ENSG00000129007	CALML4	NY-BR-20	calmodulin like 4	protein-coding
70419	chr14	102023071	102023230	+	0	NA	intron (NM_001376, intron 43 of 77)	AluJb|SINE|Alu	58577	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
106795	chr18	23886771	23887200	+	0	NA	intron (NM_198129, intron 41 of 74)	intron (NM_198129, intron 41 of 74)	13965	NM_001127718	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
66250	chr14	61353621	61353880	+	0	NA	intron (NM_006255, intron 1 of 13)	AluJr4|SINE|Alu	32307	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
145167	chr20	38853821	38854080	+	0	NA	intron (NM_001172735, intron 2 of 9)	MLT1H2|LTR|ERVL-MaLR	48253	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
132233	chr2	102357051	102358330	+	0	NA	intron (NM_001371424, intron 1 of 8)	intron (NM_001371424, intron 1 of 8)	1407	NM_001282399	8809		NM_003855	ENSG00000115604	IL18R1	CD218a|CDw218a|IL-18R-alpha|IL-18Ralpha|IL-1Rrp|IL18RA|IL18Ralpha2|IL1RRP	interleukin 18 receptor 1	protein-coding
147974	chr20	62985201	62985880	+	0	NA	Intergenic	Intergenic	21424	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
177512	chr4	118280251	118280430	+	0	NA	TTS (NR_034011)	TTS (NR_034011)	1150	NR_002963	677809		NR_002963	ENSG00000275994	SNORA24	ACA24|SNORA24A	small nucleolar RNA, H/ACA box 24	snoRNA
87339	chr16	70302801	70303200	+	0	NA	intron (NM_001257175, intron 1 of 8)	L1ME1|LINE|L1	3814	NM_007242	11269		NM_007242	ENSG00000157349	DDX19B	DBP5|DDX19|RNAh	DEAD-box helicase 19B	protein-coding
92725	chr17	14295551	14296230	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-5191	NR_130138	9953		NM_006041	ENSG00000125430	HS3ST3B1	3-OST-3B|3OST3B1|h3-OST-3B	heparan sulfate-glucosamine 3-sulfotransferase 3B1	protein-coding
74708	chr15	63097151	63097250	+	0	NA	Intergenic	Intergenic	-24661	NM_032857	114294		NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
30229	chr10	74966871	74967230	+	0	NA	intron (NM_001370135, intron 4 of 9).2	AluY|SINE|Alu	54264	NR_134476								
172441	chr4	1898771	1899580	+	0	NA	intron (NM_007331, intron 2 of 10)	intron (NM_007331, intron 2 of 10)	-1451	NM_133334	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
42666	chr11	72578971	72579130	+	0	NA	intron (NM_001243784, intron 27 of 30)	intron (NM_001243784, intron 27 of 30)	8394	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
218633	chr8	56214151	56214250	+	0	NA	intron (NR_133936, intron 2 of 5)	AluJo|SINE|Alu	2411	NM_001011671	79145		NM_024300	ENSG00000170791	CHCHD7	COX23	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding
194458	chr6	33178551	33178850	+	0	NA	exon (NM_080679, exon 15 of 63).6	exon (NM_080679, exon 15 of 63).6	13767	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
204539	chr7	4957971	4958130	+	0	NA	intron (NM_001270375, intron 1 of 7)	intron (NM_001270375, intron 1 of 7)	1137	NR_072989	221938		NM_198403	ENSG00000136297	MMD2	PAQR10	monocyte to macrophage differentiation associated 2	protein-coding
134537	chr2	143688171	143688530	+	0	NA	intron (NM_018460, intron 12 of 13)	intron (NM_018460, intron 12 of 13)	-248717	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
186305	chr5	134573271	134573430	+	0	NA	intron (NM_001289985, intron 9 of 11)	intron (NM_001289985, intron 9 of 11)	47242	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
28298	chr10	46098171	46098330	+	0	NA	Intergenic	Intergenic	-11245	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
209708	chr7	85335171	85335330	+	0	NA	Intergenic	L1PA2|LINE|L1	-85007	NM_001384901	223117		NM_152754	ENSG00000153993	SEMA3D	Sema-Z2|coll-2	semaphorin 3D	protein-coding
180242	chr5	1632121	1632580	+	0	NA	intron (NR_003713, intron 2 of 3)	intron (NR_003713, intron 2 of 3)	1655	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
141945	chr20	1277601	1277800	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	11406	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
116979	chr19	18877101	18877500	+	0	NA	TTS (NM_001290265)	TTS (NM_001290265)	18858	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
207861	chr7	50362151	50363200	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	43627	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
210881	chr7	101161771	101162000	+	0	NA	TTS (NM_001283)	TTS (NM_001283)	2412	NR_039797	100616117		NR_039797	ENSG00000264425	MIR4653	-	microRNA 4653	ncRNA
153997	chr22	30398821	30399500	+	0	NA	intron (NM_001291932, intron 1 of 10)	intron (NM_001291932, intron 1 of 10)	2142	NM_001291932	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
113917	chr19	10703501	10703980	+	0	NA	intron (NM_031209, intron 3 of 9)	AluSx1|SINE|Alu	2301	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
52942	chr12	57449671	57450030	+	0	NA	exon (NM_005538, exon 2 of 2)	exon (NM_005538, exon 2 of 2)	-5457	NM_031479	83729		NM_031479	ENSG00000139269	INHBE	-	inhibin subunit beta E	protein-coding
165796	chr3	105805251	105805350	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	62291	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
51872	chr12	53490411	53491250	+	0	NA	intron (NM_006301, intron 1 of 14)	AluJb|SINE|Alu	8628	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
220231	chr8	96337071	96337230	+	0	NA	TTS (NM_001290225)	TTS (NM_001290225)	49498	NR_125829	102724804		NR_125828		LOC102724804	-	uncharacterized LOC102724804	ncRNA
22525	chr1	221961701	221962050	+	0	NA	intron (NR_149057, intron 1 of 3)	LTR49-int|LTR|ERV1	-4535	NR_149071	110806276		NR_149071		LINC02474	lncSLCC1	long intergenic non-protein coding RNA 2474	ncRNA
32779	chr10	104353281	104354580	+	0	NA	promoter-TSS (NR_108036)	promoter-TSS (NR_108036)	97	NM_001008723	159686		NM_001008723	ENSG00000120051	CFAP58	C10orf80|CCDC147|SPGF49|bA127L20.4|bA127L20.5|bA554P13.1	cilia and flagella associated protein 58	protein-coding
90275	chr17	1001051	1001350	+	0	NA	3' UTR (NM_013337, exon 4 of 4)	3' UTR (NM_013337, exon 4 of 4)	4071	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
186960	chr5	139663021	139663700	+	0	NA	intron (NM_001317207, intron 1 of 2)	intron (NM_001317207, intron 1 of 2)	3805	NM_001317206	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
63101	chr13	113295551	113295950	+	0	NA	Intergenic	LTR62|LTR|ERVL	-1489	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
187275	chr5	141548621	141548880	+	0	NA	intron (NM_005219, intron 17 of 27)	AluJb|SINE|Alu	-9561	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
154271	chr22	31630161	31631430	+	0	NA	promoter-TSS (NM_014338)	promoter-TSS (NM_014338)	29	NM_014338	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
179486	chr4	184548301	184548880	+	0	NA	Intergenic	Intergenic	-11007	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
30905	chr10	87055521	87056050	+	0	NA	intron (NM_001318904, intron 12 of 13)	intron (NM_001318904, intron 12 of 13)	35491	NM_001146157	643161		NM_001146157	ENSG00000188100	FAM25A	bA96C23.5	family with sequence similarity 25 member A	protein-coding
79553	chr16	964251	965280	+	0	NA	intron (NM_001352017, intron 1 of 11)	CpG	6219	NM_022773	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
142029	chr20	1667501	1667880	+	0	NA	Intergenic	LTR43|LTR|ERV1	-9911	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
43911	chr11	89908671	89908830	+	0	NA	Intergenic	Intergenic	11658	NM_001105522	729384		NM_001105522	ENSG00000233802	TRIM49D2	TRIM48L1|TRIM49D1|TRIM49D2P|TRIM49L|TRIM49L1	tripartite motif containing 49D2	protein-coding
63808	chr14	21439001	21439530	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	-1990	NM_020920	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
144270	chr20	34564751	34565130	+	0	NA	intron (NM_080476, intron 11 of 11)	intron (NM_080476, intron 11 of 11)	6222	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
181244	chr5	39202101	39202450	+	0	NA	exon (NM_018594, exon 3 of 19)	exon (NM_018594, exon 3 of 19)	17288	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
188329	chr5	151225241	151226000	+	0	NA	Intergenic	Intergenic	-1528	NM_015621	26112		NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
164367	chr3	58175521	58175980	+	0	NA	Intergenic	Intergenic	-5115	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
195949	chr6	41933351	41933930	+	0	NA	TTS (NM_004053)	TTS (NM_004053)	8168	NM_001760	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
151670	chr22	17096601	17097000	+	0	NA	intron (NM_014339, intron 1 of 12)	AluY|SINE|Alu	11800	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
132421	chr2	105821951	105823250	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-29247	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
124809	chr2	7539951	7540050	+	0	NA	Intergenic	L1PB1|LINE|L1	118739	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
814	chr1	1559751	1560730	+	0	NA	intron (NM_014188, intron 2 of 4)	AluJo|SINE|Alu	14623	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
91125	chr17	3695791	3697150	+	0	NA	promoter-TSS (NM_175080)	promoter-TSS (NM_175080)	-66	NR_037928	100533970		NR_037928	ENSG00000257950	P2RX5-TAX1BP3	P2RX5|P2X5	P2RX5-TAX1BP3 readthrough (NMD candidate)	ncRNA
38912	chr11	47420671	47420830	+	0	NA	intron (NM_002804, intron 8 of 11)	intron (NM_002804, intron 8 of 11)	5689	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
82345	chr16	15954751	15955550	+	0	NA	intron (NM_004996, intron 1 of 30)	AluSx1|SINE|Alu	5534	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
172337	chr4	1694571	1694730	+	0	NA	intron (NM_006527, intron 7 of 7)	AluSx1|SINE|Alu	-10337	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
89197	chr16	88584451	88584950	+	0	NA	intron (NM_144604, intron 2 of 17)	intron (NM_144604, intron 2 of 17)	14297	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
147127	chr20	54172701	54173300	+	0	NA	exon (NM_000782, exon 2 of 12)	exon (NM_000782, exon 2 of 12)	986	NM_000782	1591		NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|HCINF1|P450-CC24	cytochrome P450 family 24 subfamily A member 1	protein-coding
34005	chr10	124691751	124692650	+	0	NA	intron (NM_014661, intron 3 of 4)	intron (NM_014661, intron 3 of 4)	-11828	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
177716	chr4	122154971	122155130	+	0	NA	intron (NM_001384125, intron 2 of 87)	L2a|LINE|L2	2719	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
162739	chr3	49039301	49039700	+	0	NA	intron (NM_001320580, intron 7 of 10)	AluSx1|SINE|Alu	-10102	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
75637	chr15	67196271	67196630	+	0	NA	Intergenic	Intergenic	30295	NM_001145104	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
203181	chr6	167129901	167130650	+	0	NA	intron (NM_031409, intron 1 of 2)	intron (NM_031409, intron 1 of 2)	7522	NM_031409	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
112473	chr19	6410601	6410800	+	0	NA	intron (NM_001321601, intron 2 of 3)	AluSx1|SINE|Alu	5811	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
239245	chrY	13094321	13094610	+	0	NA	Intergenic	MER51B|LTR|ERV1	188760	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
174769	chr4	47668871	47669150	+	0	NA	intron (NM_006587, intron 10 of 21)	intron (NM_006587, intron 10 of 21)	16341	NR_107020	102467004		NR_107020	ENSG00000277388	MIR8053	hsa-mir-8053	microRNA 8053	ncRNA
85293	chr16	48622821	48623850	+	0	NA	Intergenic	Intergenic	-13155	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
205821	chr7	24715871	24716100	+	0	NA	intron (NM_001127453, intron 5 of 9)	intron (NM_001127453, intron 5 of 9)	41479	NM_001127453	1687		NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
192630	chr6	26129401	26130180	+	0	NA	Intergenic	Intergenic	5618	NM_003512	8334		NM_003512	ENSG00000180573	H2AC6	H2A/l|H2AFL|HIST1H2AC|dJ221C16.4	H2A clustered histone 6	protein-coding
229434	chr9	121367671	121368130	+	0	NA	intron (NR_073037, intron 1 of 7)	intron (NR_073037, intron 1 of 7)	2350	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
120307	chr19	43489421	43489680	+	0	NA	intron (NM_198850, intron 9 of 15)	L1ME4b|LINE|L1	15283	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
160869	chr3	33434401	33434800	+	0	NA	intron (NM_014517, intron 1 of 15)	intron (NM_014517, intron 1 of 15)	5778	NM_001128160	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
69945	chr14	99660171	99660400	+	0	NA	exon (NM_001329411, exon 6 of 9)	exon (NM_001329411, exon 6 of 9)	15156	NM_001127258	84439		NM_032425	ENSG00000182218	HHIPL1	KIAA1822|UNQ9245	HHIP like 1	protein-coding
141671	chr2	241799201	241799400	+	0	NA	intron (NM_022134, intron 2 of 3)	intron (NM_022134, intron 2 of 3)	-9893	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
86377	chr16	66589001	66589760	+	0	NA	Intergenic	L2|LINE|L2	9917	NM_001199317	146225		NM_144673	ENSG00000140932	CMTM2	CKLFSF2	CKLF like MARVEL transmembrane domain containing 2	protein-coding
31867	chr10	100169051	100169300	+	0	NA	intron (NM_006459, intron 6 of 10)	LTR9D|LTR|ERV1	16854	NM_001100626	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
150246	chr21	41419351	41419450	+	0	NA	Intergenic	LTR49|LTR|ERV1	-1158	NM_001144925	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
47154	chr12	766151	766450	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	13377	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
236775	chrX	79081871	79082330	+	0	NA	Intergenic	Intergenic	-62588	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
103715	chr17	78833351	78833700	+	0	NA	intron (NR_169585, intron 4 of 19)	intron (NR_169585, intron 4 of 19)	7289	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
160735	chr3	32459671	32460880	+	0	NA	Intergenic	Intergenic	42577	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
141358	chr2	240626151	240626400	+	0	NA	intron (NM_005301, intron 1 of 1)	intron (NM_005301, intron 1 of 1)	1030	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
90622	chr17	1645501	1645700	+	0	NA	TTS (NM_031430)	TTS (NM_031430)	132	NM_145350	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
87631	chr16	74439701	74440100	+	0	NA	Intergenic	Intergenic	-17759	NM_001385192	497190		NM_001011880	ENSG00000140839	CLEC18B	MRCL2	C-type lectin domain family 18 member B	protein-coding
224167	chr9	5042421	5043030	+	0	NA	intron (NM_001322204, intron 1 of 21)	intron (NM_001322204, intron 1 of 21)	1032	NM_001322204	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
109025	chr18	79725721	79725980	+	0	NA	intron (NM_048368, intron 10 of 11)	L1MD1|LINE|L1	44420	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
29845	chr10	72342851	72343850	+	0	NA	intron (NR_157570, intron 3 of 8)	intron (NR_157570, intron 3 of 8)	11569	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
67091	chr14	68268851	68269380	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	359672	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
129410	chr2	68943551	68944080	+	0	NA	Intergenic	L1PA16|LINE|L1	9078	NM_182536	200504		NM_182536	ENSG00000183607	GKN2	BRICD1B|GDDR|PRO813|TFIZ1|VLTI465	gastrokine 2	protein-coding
46505	chr11	128415651	128415850	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	106560	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
10362	chr1	64945821	64946380	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	20449	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
147292	chr20	57620201	57621400	+	0	NA	promoter-TSS (NM_001323966)	promoter-TSS (NM_001323966)	-374	NM_001160419	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
153979	chr22	30376021	30376750	+	0	NA	intron (NM_001017437, intron 11 of 11)	intron (NM_001017437, intron 11 of 11)	1520	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
2801	chr1	10939821	10940930	+	0	NA	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	26312	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
174835	chr4	48364471	48364730	+	0	NA	intron (NM_020846, intron 1 of 7)	SVA_D|Retroposon|SVA	23071	NM_020846	57606		NM_020846	ENSG00000109171	SLAIN2	KIAA1458	SLAIN motif family member 2	protein-coding
231154	chr9	129874721	129876180	+	0	NA	exon (NM_001008563, exon 20 of 26)	exon (NM_001008563, exon 20 of 26)	5845	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
116997	chr19	18897371	18898930	+	0	NA	Intergenic	Intergenic	-1423	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
162865	chr3	49360651	49360950	+	0	NA	intron (NM_001313946, intron 2 of 2)	AluSc|SINE|Alu	-2200	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
156917	chr22	42282101	42282730	+	0	NA	intron (NM_005650, intron 1 of 5)	intron (NM_005650, intron 1 of 5)	1512	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
108153	chr18	62584021	62584980	+	0	NA	non-coding (NR_126534, exon 15 of 15)	non-coding (NR_126534, exon 15 of 15)	61475	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
186648	chr5	138565021	138566550	+	0	NA	intron (NM_004134, intron 9 of 16)	AluJb|SINE|Alu	-4675	NR_002913	26785		NR_002913	ENSG00000206989	SNORD63	RNU63|SNORD63A|U63	small nucleolar RNA, C/D box 63	snoRNA
189155	chr5	171386751	171388200	+	0	NA	promoter-TSS (NM_199185)	promoter-TSS (NM_199185)	-229	NM_001355010	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
23908	chr1	234987551	234987900	+	0	NA	Intergenic	Intergenic	-23726	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
142323	chr20	3671071	3671230	+	0	NA	exon (NM_001282447, exon 19 of 22)	exon (NM_001282447, exon 19 of 22)	-7751	NM_145762	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
165768	chr3	105763301	105763850	+	0	NA	intron (NR_135806, intron 4 of 20)	THE1B|LTR|ERVL-MaLR	104016	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
216147	chr8	11501371	11501930	+	0	NA	intron (NM_001330465, intron 1 of 11).2	MER63C|DNA|hAT-Blackjack	7263	NM_001330465	640		NM_001715	ENSG00000136573	BLK	MODY11	BLK proto-oncogene, Src family tyrosine kinase	protein-coding
3665	chr1	16420471	16421830	+	0	NA	intron (NM_001353349, intron 2 of 10)	intron (NM_001353349, intron 2 of 10)	16274	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
70884	chr14	103851371	103851830	+	0	NA	intron (NR_038436, intron 1 of 2)	AluSx1|SINE|Alu	3879	NR_038436	145216		NR_038436	ENSG00000258735	PPP1R13B-DT	HITT|LINC00637	PPP1R13B divergent transcript	ncRNA
162601	chr3	48696221	48696480	+	0	NA	intron (NM_016291, intron 1 of 5)	intron (NM_016291, intron 1 of 5)	-10435	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
207348	chr7	44073771	44075300	+	0	NA	intron (NM_001284330, intron 5 of 8)	intron (NM_001284330, intron 5 of 8)	-1102	NR_106897	102465504		NR_106897	ENSG00000283969	MIR6838	hsa-mir-6838	microRNA 6838	ncRNA
195588	chr6	37535701	37536830	+	0	NA	TTS (NR_126057)	TTS (NR_126057)	19157	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
106478	chr18	14333951	14334250	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-3323	NR_026756	284233		NR_026756	ENSG00000290462	CYP4F35P	-	cytochrome P450 family 4 subfamily F member 35, pseudogene	pseudo
177133	chr4	108111651	108112230	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	54857	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
142247	chr20	3155121	3155450	+	0	NA	intron (NM_021826, intron 1 of 1)	AluSx1|SINE|Alu	4580	NM_014948	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
140025	chr2	231053971	231054730	+	0	NA	Intergenic	Intergenic	-2514	NM_001191037	5707		NM_002807	ENSG00000173692	PSMD1	P112|Rpn2|S1	proteasome 26S subunit, non-ATPase 1	protein-coding
198503	chr6	106481021	106481100	+	0	NA	intron (NM_001371242, intron 2 of 21)	AluYa5|SINE|Alu	-23812	NR_134603	105377924		NR_134603	ENSG00000282408	LOC105377924	-	uncharacterized LOC105377924	ncRNA
20626	chr1	199113251	199113550	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-35198	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
233418	chr9	137596521	137596780	+	0	NA	Intergenic	AluSx|SINE|Alu	-6138	NM_138462	116225		NM_138462	ENSG00000165724	ZMYND19	MIZIP	zinc finger MYND-type containing 19	protein-coding
222016	chr8	130066801	130067100	+	0	NA	intron (NM_001362924, intron 28 of 30)	intron (NM_001362924, intron 28 of 30)	17818	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
217757	chr8	30981501	30981700	+	0	NA	Intergenic	L1ME1|LINE|L1	51201	NM_013357	29942		NM_013357	ENSG00000172733	PURG	PURG-A|PURG-B|PURGA|PURGB	purine rich element binding protein G	protein-coding
226925	chr9	79590371	79590530	+	0	NA	intron (NM_001351556, intron 4 of 18)	intron (NM_001351556, intron 4 of 18)	17273	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
127780	chr2	44187851	44188150	+	0	NA	intron (NM_177969, intron 1 of 4)	AluY|SINE|Alu	19125	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
159963	chr3	17579671	17579830	+	0	NA	intron (NM_001349089, intron 1 of 20)	intron (NM_001349089, intron 1 of 20)	120270	NM_001134381	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
188023	chr5	149616971	149617130	+	0	NA	intron (NM_001001669, intron 5 of 12)	MLT1K|LTR|ERVL-MaLR	35552	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
162951	chr3	49587521	49587850	+	0	NA	intron (NM_003458, intron 1 of 11)	MER51A|LTR|ERV1	33208	NM_003458	8927		NM_003458	ENSG00000164061	BSN	ZNF231	bassoon presynaptic cytomatrix protein	protein-coding
19074	chr1	170073551	170073650	+	0	NA	intron (NM_001204514, intron 1 of 20)	MIR3|SINE|MIR	1095	NM_001375830	22920		NM_014970	ENSG00000075945	KIFAP3	FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1	kinesin associated protein 3	protein-coding
233685	chrX	1173601	1174100	+	0	NA	Intergenic	Intergenic	38799	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
144543	chr20	35722901	35724630	+	0	NA	intron (NM_184234, intron 8 of 16)	intron (NM_184234, intron 8 of 16)	18495	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
59469	chr13	26053551	26053650	+	0	NA	intron (NR_146971, intron 1 of 1)	intron (NR_146971, intron 1 of 1)	-1584	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
89029	chr16	88371951	88372350	+	0	NA	Intergenic	Intergenic	-10809	NM_001367624	84627		NM_001127464	ENSG00000225614	ZNF469	BCS|BCS1|Zfp469	zinc finger protein 469	protein-coding
86668	chr16	67480151	67483550	+	0	NA	promoter-TSS (NM_004691)	promoter-TSS (NM_004691)	-693	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
95598	chr17	37430301	37430500	+	0	NA	intron (NM_001166105, intron 4 of 15).2	intron (NM_001166105, intron 4 of 15).2	23175	NM_001488	6871		NM_001488	ENSG00000276234	TADA2A	ADA2|ADA2A|KL04P|TADA2L|hADA2	transcriptional adaptor 2A	protein-coding
212557	chr7	128870971	128871200	+	0	NA	3' UTR (NM_001195150, exon 2 of 2)	3' UTR (NM_001195150, exon 2 of 2)	4755	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
57533	chr12	122145771	122146850	+	0	NA	3' UTR (NM_014938, exon 17 of 17)	3' UTR (NM_014938, exon 17 of 17)	-21409	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
194183	chr6	32120601	32120800	+	0	NA	intron (NM_001136153, intron 8 of 17).4	AluSx1|SINE|Alu	7546	NM_004381	1388		NM_004381	ENSG00000213676	ATF6B	ATF6beta|CREB-RP|CREBL1|G13	activating transcription factor 6 beta	protein-coding
191235	chr6	5831271	5832080	+	0	NA	Intergenic	Intergenic	-136403	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
211012	chr7	102357351	102357650	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1056	NM_001146210	729597		NM_001146210	ENSG00000260097	SPDYE6	-	speedy/RINGO cell cycle regulator family member E6	protein-coding
235344	chrX	44245721	44246000	+	0	NA	intron (NM_025184, intron 7 of 14)	intron (NM_025184, intron 7 of 14)	97812	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
56046	chr12	110469001	110470130	+	0	NA	promoter-TSS (NM_001164372)	promoter-TSS (NM_001164372)	720	NM_013300	29902		NM_013300	ENSG00000204856	FAM216A	C12orf24|HSU79274	family with sequence similarity 216 member A	protein-coding
12814	chr1	109913251	109913850	+	0	NA	intron (NM_172210, intron 1 of 8)	intron (NM_172210, intron 1 of 8)	2701	NM_172210	1435		NM_000757	ENSG00000184371	CSF1	CSF-1|MCSF|PG-M-CSF	colony stimulating factor 1	protein-coding
122669	chr19	49874101	49874630	+	0	NA	intron (NM_001278160, intron 1 of 4)	intron (NM_001278160, intron 1 of 4)	1884	NM_001278159	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
52440	chr12	55922071	55922230	+	0	NA	intron (NM_032345, intron 1 of 2)	AluJr|SINE|Alu	4975	NM_001143853	84305		NM_032345	ENSG00000170473	PYM1	PYM|WIBG	PYM homolog 1, exon junction complex associated factor	protein-coding
66934	chr14	65470501	65471630	+	0	NA	promoter-TSS (NR_030355)	promoter-TSS (NR_030355)	-37	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
221700	chr8	127168921	127169180	+	0	NA	Intergenic	L1MC1|LINE|L1	28577	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
149056	chr21	15164051	15164150	+	0	NA	Intergenic	AluY|SINE|Alu	-99100	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
214253	chr7	148915421	148916100	+	0	NA	Intergenic	AluJr|SINE|Alu	-25728	NR_001571	6090		NR_001571		RNY5	Y5|hY5	RNA, Ro60-associated Y5	ncRNA
35677	chr11	1878601	1879680	+	0	NA	promoter-TSS (NR_107001)	promoter-TSS (NR_107001)	-905	NR_107001	102465993		NR_107001	ENSG00000284594	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
173157	chr4	6684401	6684600	+	0	NA	Intergenic	Intergenic	6019	NR_147207	339988		NR_147207	ENSG00000246526	LINC02481	LINC002481	long intergenic non-protein coding RNA 2481	ncRNA
41297	chr11	65869701	65870130	+	0	NA	non-coding (NR_037718, exon 7 of 12)	non-coding (NR_037718, exon 7 of 12)	2885	NM_016938	30008		NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin extracellular matrix protein 2	protein-coding
145148	chr20	38831751	38832380	+	0	NA	intron (NM_001172735, intron 1 of 9)	L2c|LINE|L2	26368	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
213733	chr7	140387151	140387450	+	0	NA	intron (NM_032295, intron 1 of 11)	AluJo|SINE|Alu	11230	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
20448	chr1	198534801	198535430	+	0	NA	intron (NM_133262, intron 2 of 3)	intron (NM_133262, intron 2 of 3)	5565	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
218082	chr8	38935571	38935750	+	0	NA	intron (NM_021623, intron 2 of 11)	AluJr|SINE|Alu	34314	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
204728	chr7	5554951	5557180	+	0	NA	Intergenic	CpG	-25464	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
195976	chr6	41966401	41966800	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-24752	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
122580	chr19	49686771	49687350	+	0	NA	intron (NM_001536, intron 10 of 10)	intron (NM_001536, intron 10 of 10)	-1625	NM_001101340	199800		NM_001101340	ENSG00000224420	ADM5	AM5|C19orf76	adrenomedullin 5 (putative)	protein-coding
152275	chr22	20293021	20293280	+	0	NA	Intergenic	Intergenic	-24832	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
180126	chr5	1316301	1317630	+	0	NA	TTS (NM_030782)	TTS (NM_030782)	-7588	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
72568	chr15	34554421	34554680	+	0	NA	intron (NM_001023567, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	-26179	NR_036261	100422845		NR_036261	ENSG00000221065	MIR1233-2	-	microRNA 1233-2	ncRNA
151999	chr22	19182601	19182800	+	0	NA	intron (NM_001835, intron 29 of 31)	intron (NM_001835, intron 29 of 31)	-3837	NR_046298	6576		NM_005984	ENSG00000100075	SLC25A1	CIC|CMS23|CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding
111919	chr19	4721151	4721450	+	0	NA	promoter-TSS (NM_001384611)	promoter-TSS (NM_001384611)	-907	NM_001384614	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
24589	chr1	245816971	245817130	+	0	NA	intron (NM_001375966, intron 7 of 8)	L1PA3|LINE|L1	171501	NM_001375965	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
36492	chr11	6379201	6379750	+	0	NA	Intergenic	Intergenic	-10999	NM_001365135	6609		NM_000543	ENSG00000166311	SMPD1	ASM|ASMASE|NPD	sphingomyelin phosphodiesterase 1	protein-coding
223931	chr9	650401	650680	+	0	NA	intron (NM_001256877, intron 2 of 12)	MER5A1|DNA|hAT-Charlie	-36227	NM_001354336	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
88793	chr16	87364201	87364730	+	0	NA	intron (NM_001282683, intron 2 of 9)	intron (NM_001282683, intron 2 of 9)	19311	NM_024735	79791		NM_024735	ENSG00000103264	FBXO31	FBX14|FBXO14|Fbx31|MRT45|pp2386	F-box protein 31	protein-coding
81965	chr16	11867501	11867880	+	0	NA	TTS (NM_002094)	TTS (NM_002094)	-16148	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
35368	chr11	1259001	1259300	+	0	NA	intron (NM_002458, intron 44 of 48)	intron (NM_002458, intron 44 of 48)	2545	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
4759	chr1	23523271	23523430	+	0	NA	intron (NM_004091, intron 2 of 6)	AluSx|SINE|Alu	1420	NR_110799	101928163		NR_110799		LOC101928163	-	uncharacterized LOC101928163	ncRNA
37048	chr11	12199551	12200350	+	0	NA	intron (NR_144415, intron 2 of 26)	intron (NR_144415, intron 2 of 26)	36267	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
100056	chr17	58098201	58098400	+	0	NA	Intergenic	AluJb|SINE|Alu	14881	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
12037	chr1	97922501	97922700	+	0	NA	Intergenic	L2a|LINE|L2	-1541	NM_001160301	1806		NM_000110	ENSG00000188641	DPYD	DHP|DHPDHASE|DPD|DYPD	dihydropyrimidine dehydrogenase	protein-coding
8535	chr1	41020121	41020430	+	0	NA	exon (NM_001377532, exon 1 of 4)	exon (NM_001377532, exon 1 of 4)	1450	NM_001377532	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
213634	chr7	139646971	139647350	+	0	NA	intron (NM_022740, intron 2 of 14)	L2c|LINE|L2	123475	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
118989	chr19	38883371	38884030	+	0	NA	exon (NM_030593, exon 8 of 15)	exon (NM_030593, exon 8 of 15)	-5425	NM_001195833	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
228898	chr9	112803621	112803980	+	0	NA	intron (NM_001012994, intron 1 of 8)	L1HS|LINE|L1	53040	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
134425	chr2	143125371	143125530	+	0	NA	Intergenic	L1M5|LINE|L1	-3969	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
135023	chr2	156192651	156192750	+	0	NA	intron (NR_110250, intron 1 of 3)	intron (NR_110250, intron 1 of 3)	62231	NR_110250	101929378		NR_110249	ENSG00000226383	LINC01876	uc.83	long intergenic non-protein coding RNA 1876	ncRNA
22899	chr1	225865571	225866750	+	0	NA	intron (NM_014698, intron 9 of 24)	intron (NM_014698, intron 9 of 24)	16220	NM_014698	9725		NM_014698	ENSG00000196187	TMEM63A	HLD19|KIAA0792	transmembrane protein 63A	protein-coding
16124	chr1	153648721	153648980	+	0	NA	Intergenic	AluSp|SINE|Alu	-9804	NR_052020	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
72739	chr15	39263051	39263350	+	0	NA	Intergenic	L1PA6|LINE|L1	12531	NR_144508	400360		NM_207445	ENSG00000175746	LINC02915	C15orf54	long intergenic non-protein coding RNA 2915	ncRNA
25433	chr10	6579901	6581000	+	0	NA	promoter-TSS (NM_006257)	promoter-TSS (NM_006257)	25	NR_036503	439949		NR_036502	ENSG00000237943	PRKCQ-AS1	-	PRKCQ antisense RNA 1	ncRNA
115071	chr19	14202051	14202550	+	0	NA	intron (NM_001008701, intron 1 of 23)	AluSx|SINE|Alu	3869	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
86179	chr16	57814821	57815400	+	0	NA	intron (NR_169553, intron 2 of 3)	intron (NR_169553, intron 2 of 3)	4473	NM_001278081	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
205570	chr7	21338751	21339450	+	0	NA	Intergenic	Intergenic	-88983	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
81990	chr16	11899671	11900030	+	0	NA	intron (NM_001130007, intron 1 of 14)	intron (NM_001130007, intron 1 of 14)	16106	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
197885	chr6	89239401	89240030	+	0	NA	Intergenic	Intergenic	-8427	NM_001267582	2569		NM_002042	ENSG00000146276	GABRR1	-	gamma-aminobutyric acid type A receptor subunit rho1	protein-coding
125638	chr2	19365151	19366280	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-7092	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
219340	chr8	70223521	70223930	+	0	NA	intron (NM_001321713, intron 2 of 21)	MIR|SINE|MIR	-152473	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
170490	chr3	186108701	186109590	+	0	NA	promoter-TSS (NM_004454)	promoter-TSS (NM_004454)	-56	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
45946	chr11	121336451	121337050	+	0	NA	Intergenic	Intergenic	43882	NM_001024956	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
8837	chr1	43171771	43173180	+	0	NA	promoter-TSS (NR_106791)	promoter-TSS (NR_106791)	95	NM_001159936	10969		NM_006824	ENSG00000117395	EBNA1BP2	EBP2|NOBP|P40	EBNA1 binding protein 2	protein-coding
167539	chr3	129315901	129317850	+	0	NA	promoter-TSS (NM_006026)	promoter-TSS (NM_006026)	-589	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
172516	chr4	2268571	2268730	+	0	NA	TTS (NM_001172656)	TTS (NM_001172656)	-6541	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
143691	chr20	32121671	32122250	+	0	NA	intron (NM_001363731, intron 1 of 17)	SVA_D|Retroposon|SVA	12232	NM_001363731	9777		NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding
219875	chr8	85290101	85290350	+	0	NA	Intergenic	Intergenic	44767	NM_198584	377677		NM_198584	ENSG00000185015	CA13	CAXIII	carbonic anhydrase 13	protein-coding
44979	chr11	116916401	116916600	+	0	NA	intron (NM_001366687, intron 4 of 4)	intron (NM_001366687, intron 4 of 4)	-78550	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
62999	chr13	112488771	112488930	+	0	NA	intron (NM_001286277, intron 21 of 21)	intron (NM_001286277, intron 21 of 21)	99303	NM_006322	10426		NM_006322	ENSG00000126216	TUBGCP3	104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex component 3	protein-coding
27164	chr10	28503101	28503300	+	0	NA	Intergenic	Intergenic	-7387	NR_134496	105376468		NR_134496	ENSG00000237128	LINC02652	-	long intergenic non-protein coding RNA 2652	ncRNA
164861	chr3	71063971	71065760	+	0	NA	promoter-TSS (NM_001244813)	promoter-TSS (NM_001244813)	59	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
151124	chr21	44889651	44889750	+	0	NA	intron (NM_001127491, intron 12 of 15)	intron (NM_001127491, intron 12 of 15)	-15797	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
54524	chr12	92120621	92121130	+	0	NA	intron (NR_132341, intron 1 of 4)	L1ME3E|LINE|L1	20838	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
172831	chr4	3191371	3191530	+	0	NA	intron (NM_002111, intron 40 of 66)	AluSp|SINE|Alu	-52919	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
228866	chr9	112349571	112349730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-15986	NM_001163790	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
120801	chr19	45460821	45461600	+	0	NA	Intergenic	Intergenic	-6786	NM_001114171	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
205243	chr7	8039951	8040250	+	0	NA	intron (NM_138426, intron 3 of 7)	L1ME1|LINE|L1	71304	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
110854	chr19	2598991	2600150	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-31145	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
55662	chr12	107337221	107337480	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	16762	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
14863	chr1	146405571	146406380	+	0	NA	Intergenic	AluJb|SINE|Alu	29168	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
13613	chr1	116400801	116401200	+	0	NA	non-coding (NR_027646, exon 2 of 3)	non-coding (NR_027646, exon 2 of 3)	17559	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
68508	chr14	88551451	88552200	+	0	NA	intron (NM_007039, intron 1 of 18)	FRAM|SINE|Alu	3182	NM_007039	11099		NM_007039	ENSG00000070778	PTPN21	PTPD1|PTPRL10	protein tyrosine phosphatase non-receptor type 21	protein-coding
205327	chr7	12497051	12497630	+	0	NA	promoter-TSS (NR_136262)	promoter-TSS (NR_136262)	94	NR_136262	102725191		NM_001386512	ENSG00000226690	C7orf78	-	chromosome 7 open reading frame 78	protein-coding
135329	chr2	160371751	160372330	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	35842	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
97853	chr17	44971921	44972580	+	0	NA	Intergenic	Intergenic	-3947	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
170761	chr3	188441371	188441730	+	0	NA	intron (NR_164692, intron 3 of 9)	intron (NR_164692, intron 3 of 9)	127116	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
153690	chr22	29204071	29204230	+	0	NA	Intergenic	Intergenic	-1746	NM_133455	129080		NM_133455	ENSG00000186998	EMID1	EMI5|EMU1	EMI domain containing 1	protein-coding
113610	chr19	10301571	10301930	+	0	NA	Intergenic	AluSx3|SINE|Alu	7807	NM_001103167	100125288		NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	zinc finger GATA like protein 1	protein-coding
99710	chr17	50865901	50868400	+	0	NA	promoter-TSS (NM_005749)	promoter-TSS (NM_005749)	471	NR_038458	400604		NR_038458	ENSG00000229980	TOB1-AS1	-	TOB1 antisense RNA 1	ncRNA
89399	chr16	88818101	88818430	+	0	NA	intron (NM_000512, intron 12 of 13)	intron (NM_000512, intron 12 of 13)	-6337	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
26017	chr10	12263521	12264880	+	0	NA	Intergenic	AluSq|SINE|Alu	68012	NM_006023	8872		NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
213116	chr7	131324221	131324680	+	0	NA	intron (NR_125364, intron 2 of 5)	LTR56|LTR|ERV1	3329	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
26834	chr10	24656651	24657200	+	0	NA	intron (NM_001367450, intron 4 of 27)	SVA_F|Retroposon|SVA	-34082	NR_160024	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
38657	chr11	46378221	46379890	+	0	NA	exon (NM_001105540, exon 29 of 32)	exon (NM_001105540, exon 29 of 32)	-1729	NM_001270550	4192		NM_002391	ENSG00000110492	MDK	ARAP|MK|NEGF2	midkine	protein-coding
168015	chr3	136879701	136879900	+	0	NA	intron (NM_001291999, intron 1 of 3)	L1PA6|LINE|L1	17592	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
164955	chr3	71261951	71262250	+	0	NA	intron (NM_001012505, intron 5 of 6)	AluSg|SINE|Alu	-17023	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
40079	chr11	62775601	62776330	+	0	NA	intron (NM_006473, intron 2 of 10)	intron (NM_006473, intron 2 of 10)	4569	NM_006473	10629		NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
80807	chr16	3444971	3445450	+	0	NA	intron (NM_001083601, intron 1 of 7)	intron (NM_001083601, intron 1 of 7)	1530	NM_001083601	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
64651	chr14	31419851	31421150	+	0	NA	promoter-TSS (NR_110045)	promoter-TSS (NR_110045)	50	NM_015473	25938		NM_015473	ENSG00000129493	HEATR5A	C14orf125|p200b	HEAT repeat containing 5A	protein-coding
60385	chr13	40944551	40945450	+	0	NA	intron (NM_001370329, intron 6 of 9)	intron (NM_001370329, intron 6 of 9)	-23226	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
153946	chr22	30345151	30345250	+	0	NA	intron (NM_005877, intron 3 of 15)	intron (NM_005877, intron 3 of 15)	-11424	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
98084	chr17	45581851	45582250	+	0	NA	Intergenic	L2c|LINE|L2	19812	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
32259	chr10	102021971	102022130	+	0	NA	intron (NM_024541, intron 8 of 25)	Tigger3b|DNA|TcMar-Tigger	34123	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
90755	chr17	2046021	2046280	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	3858	NR_029674	406921		NR_029674	ENSG00000267200	MIR132	MIRN132|miRNA132|mir-132	microRNA 132	ncRNA
120665	chr19	45092501	45094080	+	0	NA	5' UTR (NM_019121, exon 1 of 13)	5' UTR (NM_019121, exon 1 of 13)	111	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
76794	chr15	77023851	77025080	+	0	NA	intron (NR_135552, intron 3 of 11)	intron (NR_135552, intron 3 of 11)	29339	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
48030	chr12	6950601	6951600	+	0	NA	promoter-TSS (NM_080549)	promoter-TSS (NM_080549)	-171	NM_080549	5777		NM_002831	ENSG00000111679	PTPN6	HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1	protein tyrosine phosphatase non-receptor type 6	protein-coding
33445	chr10	119032471	119033300	+	0	NA	TTS (NM_003750)	TTS (NM_003750)	3171	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
164605	chr3	66297301	66298400	+	0	NA	intron (NM_173471, intron 6 of 10)	intron (NM_173471, intron 6 of 10)	76847	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
161085	chr3	38131671	38132130	+	0	NA	intron (NM_001130410, intron 4 of 9)	intron (NM_001130410, intron 4 of 9)	5227	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
224239	chr9	5843101	5843380	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-10123	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
67321	chr14	69625201	69626180	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	14094	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
35924	chr11	2441451	2441780	+	0	NA	Intergenic	Intergenic	-3393	NM_000218	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
223759	chr8	144520001	144521230	+	0	NA	exon (NM_001272036, exon 4 of 5)	exon (NM_001272036, exon 4 of 5)	2623	NM_014665	9684		NM_014665	ENSG00000160959	LRRC14	LRRC14A	leucine rich repeat containing 14	protein-coding
150279	chr21	41865251	41865550	+	0	NA	intron (NM_022115, intron 5 of 30)	intron (NM_022115, intron 5 of 30)	-2098	NR_104260	63977		NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
127852	chr2	45640351	45640850	+	0	NA	Intergenic	Intergenic	-11075	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
118548	chr19	36125401	36125800	+	0	NA	intron (NR_155756, intron 5 of 5)	intron (NR_155756, intron 5 of 5)	9830	NM_001300971	1155		NM_001281	ENSG00000105254	TBCB	CG22|CKAP1|CKAPI	tubulin folding cofactor B	protein-coding
161804	chr3	45388021	45388880	+	0	NA	promoter-TSS (NM_015340)	promoter-TSS (NM_015340)	-126	NM_001368263	23395		NM_015340	ENSG00000011376	LARS2	HLASA|LEURS|PRLTS4|mtLeuRS	leucyl-tRNA synthetase 2, mitochondrial	protein-coding
59963	chr13	31908951	31909250	+	0	NA	intron (NR_027062, intron 1 of 3)	intron (NR_027062, intron 1 of 3)	62317	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
47722	chr12	6460501	6461400	+	0	NA	intron (NM_001351355, intron 7 of 7)	intron (NM_001351355, intron 7 of 7)	8908	NR_147127	55080		NM_018009	ENSG00000139192	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein like	protein-coding
80267	chr16	2229671	2229830	+	0	NA	intron (NM_004424, intron 3 of 13)	intron (NM_004424, intron 3 of 13)	6159	NM_004424	1877		NM_004424	ENSG00000167967	E4F1	E4F	E4F transcription factor 1	protein-coding
128363	chr2	55000021	55000280	+	0	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	10122	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133563	chr2	121402321	121402650	+	0	NA	intron (NM_001378005, intron 26 of 37)	intron (NM_001378005, intron 26 of 37)	-117283	NM_014553	29842		NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
44060	chr11	95255571	95255730	+	0	NA	Intergenic	MIRb|SINE|MIR	-23175	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
162615	chr3	48706121	48706730	+	0	NA	intron (NM_016291, intron 1 of 5)	AluJr|SINE|Alu	10796	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
48541	chr12	10218021	10218280	+	0	NA	intron (NM_031412, intron 2 of 3)	intron (NM_031412, intron 2 of 3)	5273	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
130857	chr2	87397371	87397530	+	0	NA	Intergenic	(CCAAGCCAG)n|Simple_repeat|Simple_repeat	-57977	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
200859	chr6	138572121	138572600	+	0	NA	5' UTR (NM_020464, exon 1 of 7)	5' UTR (NM_020464, exon 1 of 7)	209	NM_020464	57224		NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
68192	chr14	76761471	76762550	+	0	NA	5' UTR (NM_014909, exon 1 of 7)	5' UTR (NM_014909, exon 1 of 7)	542	NM_014909	22846		NM_014909	ENSG00000071246	VASH1	KIAA1036|TTCP 1	vasohibin 1	protein-coding
195872	chr6	41562101	41562300	+	0	NA	intron (NM_138457, intron 1 of 16)	intron (NM_138457, intron 1 of 16)	-13579	NR_126415	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
157623	chr22	46069751	46070000	+	0	NA	intron (NR_148973, intron 1 of 1)	intron (NR_148973, intron 1 of 1)	1146	NR_148973	642648		NR_148973		LINC02939	-	long intergenic non-protein coding RNA 2939	ncRNA
214748	chr7	151056701	151056900	+	0	NA	intron (NM_004935, intron 3 of 11)	intron (NM_004935, intron 3 of 11)	1097	NM_001164410	1020		NM_004935	ENSG00000164885	CDK5	LIS7|PSSALRE	cyclin dependent kinase 5	protein-coding
162488	chr3	48565001	48565450	+	0	NA	intron (NM_000094, intron 116 of 118)	intron (NM_000094, intron 116 of 118)	-1444	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
101930	chr17	74472451	74472750	+	0	NA	intron (NM_001256841, intron 1 of 5)	intron (NM_001256841, intron 1 of 5)	5966	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
42389	chr11	68891671	68891830	+	0	NA	intron (NM_181514, intron 6 of 6)	intron (NM_181514, intron 6 of 6)	12082	NM_181514	219927		NM_181512	ENSG00000197345	MRPL21	L21mt|MRP-L21|bL21m	mitochondrial ribosomal protein L21	protein-coding
134359	chr2	136162571	136163080	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	-44676	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
32317	chr10	102171801	102172000	+	0	NA	Intergenic	AluSq2|SINE|Alu	19511	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
167300	chr3	128678771	128678930	+	0	NA	Intergenic	AluSp|SINE|Alu	-28032	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
62075	chr13	94351351	94351650	+	0	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	128182	NM_001922	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
44095	chr11	95764051	95764730	+	0	NA	Intergenic	Intergenic	25392	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
204357	chr7	2905451	2905950	+	0	NA	TTS (NM_001324281)	TTS (NM_001324281)	-61392	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
16272	chr1	153998521	153998980	+	0	NA	intron (NM_001159484, intron 35 of 37)	AluJo|SINE|Alu	7988	NM_001030	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
92648	chr17	10317271	10317430	+	0	NA	intron (NM_003802, intron 27 of 40)	intron (NM_003802, intron 27 of 40)	55656	NM_003802	8735		NM_003802	ENSG00000006788	MYH13	MyHC-IIL|MyHC-eo	myosin heavy chain 13	protein-coding
45816	chr11	119353901	119354100	+	0	NA	Intergenic	AluSp|SINE|Alu	-7295	NM_015645	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
75517	chr15	66494021	66494480	+	0	NA	3' UTR (NM_001329613, exon 2 of 2)	3' UTR (NM_001329613, exon 2 of 2)	2784	NR_039737	100616149		NR_039737	ENSG00000266589	MIR4512	-	microRNA 4512	ncRNA
179895	chr5	672401	673830	+	0	NA	intron (NM_007030, intron 2 of 3)	intron (NM_007030, intron 2 of 3)	20237	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
181877	chr5	54488951	54489600	+	0	NA	Intergenic	MIRb|SINE|MIR	-28484	NM_001145427	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
157724	chr22	46542321	46542800	+	0	NA	Intergenic	Intergenic	-4940	NM_001378328	9620		NM_014246	ENSG00000075275	CELSR1	ADGRC1|CDHF9|FMI2|HFMI2|LMPHM9|ME2	cadherin EGF LAG seven-pass G-type receptor 1	protein-coding
18833	chr1	167680101	167680300	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	-41782	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
210470	chr7	100150651	100150750	+	0	NA	intron (NR_134530, intron 2 of 3)	intron (NR_134530, intron 2 of 3)	1722	NR_134530								
27665	chr10	33048671	33048830	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	68057	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
103701	chr17	78820321	78821030	+	0	NA	intron (NR_169581, intron 8 of 20)	intron (NR_169581, intron 8 of 20)	20139	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
40960	chr11	65351851	65352350	+	0	NA	3' UTR (NM_006268, exon 11 of 11)	3' UTR (NM_006268, exon 11 of 11)	-2651	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
33054	chr10	110867401	110867980	+	0	NA	Intergenic	MIR3|SINE|MIR	3214	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
231382	chr9	130700771	130701580	+	0	NA	intron (NM_001282709, intron 5 of 7)	intron (NM_001282709, intron 5 of 7)	7395	NM_014285	23404		NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|SHRF|hRrp4p|p7	exosome component 2	protein-coding
56304	chr12	112416051	112416700	+	0	NA	intron (NM_001320141, intron 1 of 8)	AluY|SINE|Alu	2460	NM_001320141	6128		NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1|eL6	ribosomal protein L6	protein-coding
139579	chr2	224952571	224952750	+	0	NA	intron (NM_014689, intron 1 of 55)	AluYa5|SINE|Alu	-5611	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
209577	chr7	77436351	77436450	+	0	NA	Intergenic	L1MC5|LINE|L1	-20051	NM_001350896	54103		NM_017439	ENSG00000186088	GSAP	PION	gamma-secretase activating protein	protein-coding
165925	chr3	107429451	107430280	+	0	NA	Intergenic	Charlie23a|DNA|hAT-Charlie	-1065	NR_110039	101929607		NR_110039	ENSG00000273125	LINC01990	-	long intergenic non-protein coding RNA 1990	ncRNA
93687	chr17	19364921	19365780	+	0	NA	intron (NM_001368769, intron 1 of 6)	intron (NM_001368769, intron 1 of 6)	-2612	NM_001243473	27077		NM_015681	ENSG00000108641	B9D1	B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1	B9 domain containing 1	protein-coding
99170	chr17	49407021	49407280	+	0	NA	intron (NM_001281496, intron 5 of 6)	intron (NM_001281496, intron 5 of 6)	7708	NM_001281496	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
14203	chr1	125183621	125183880	+	0	NA	Intergenic	Intergenic	3664638	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
174506	chr4	39970471	39971150	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluJb|SINE|Alu	7101	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
183391	chr5	77718921	77719580	+	0	NA	intron (NM_001297738, intron 1 of 2)	MIRb|SINE|MIR	57089	NM_004607	6902		NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
60418	chr13	40979021	40979580	+	0	NA	intron (NM_001370329, intron 2 of 9)	MIR|SINE|MIR	2982	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
172385	chr4	1764171	1764330	+	0	NA	Intergenic	AluSp|SINE|Alu	-29043	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
27690	chr10	33129951	33130850	+	0	NA	Intergenic	MADE2|DNA|TcMar-Mariner	-13593	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
40995	chr11	65400301	65400700	+	0	NA	intron (NM_001300832, intron 7 of 9)	intron (NM_001300832, intron 7 of 9)	13863	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
88244	chr16	82439801	82440000	+	0	NA	Intergenic	Intergenic	-187069	NM_001257	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
170083	chr3	182977771	182977930	+	0	NA	intron (NM_001308101, intron 1 of 6)	AluSx1|SINE|Alu	2688	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
64709	chr14	34094001	34094400	+	0	NA	Intergenic	Intergenic	-143126	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
226768	chr9	76458001	76458350	+	0	NA	promoter-TSS (NM_001097633)	promoter-TSS (NM_001097633)	-977	NM_001097633	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
223512	chr8	144100201	144100930	+	0	NA	intron (NM_030974, intron 2 of 8)	intron (NM_030974, intron 2 of 8)	3208	NR_038270	81858		NM_030974	ENSG00000179526	SHARPIN	AIFID|SIPL1	SHANK associated RH domain interactor	protein-coding
238312	chrX	149504911	149506050	+	0	NA	promoter-TSS (NR_104128)	promoter-TSS (NR_104128)	-174	NM_001166550	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
33542	chr10	119285851	119286550	+	0	NA	intron (NM_005308, intron 1 of 15)	L1MC5a|LINE|L1	78629	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
228962	chr9	113507871	113508330	+	0	NA	intron (NM_144488, intron 14 of 25)	MER103C|DNA|hAT-Charlie	6593	NM_130795	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
202961	chr6	161241651	161242550	+	0	NA	intron (NM_020133, intron 1 of 8)	MIRb|SINE|MIR	31961	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
197331	chr6	73391621	73392480	+	0	NA	Intergenic	L1MC|LINE|L1	-2778	NM_018665	55510		NM_018665	ENSG00000080007	DDX43	CT13|HAGE	DEAD-box helicase 43	protein-coding
47214	chr12	859871	860030	+	0	NA	intron (NM_018979, intron 6 of 27)	AluJo|SINE|Alu	73126	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
96365	chr17	40093401	40094330	+	0	NA	TTS (NM_001190919)	TTS (NM_001190919)	6724	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
224494	chr9	17073601	17073800	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-61340	NM_001114395	54875		NM_017738	ENSG00000044459	CNTLN	C9orf101|C9orf39|bA340N12.1	centlein	protein-coding
174887	chr4	48815621	48815880	+	0	NA	Intergenic	Intergenic	-15293	NM_001079841	54940		NM_017830	ENSG00000109180	OCIAD1	ASRIJ|OCIA|TPA018	OCIA domain containing 1	protein-coding
197004	chr6	53312201	53313400	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	24817	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
28788	chr10	62075471	62076030	+	0	NA	intron (NM_001244638, intron 5 of 6)	L3|LINE|CR1	26393	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
209320	chr7	76153371	76154100	+	0	NA	Intergenic	Intergenic	-44973	NR_135079	101927126		NR_135079		GTF2IP7	-	general transcription factor IIi pseudogene 7	pseudo
86719	chr16	67560821	67561080	+	0	NA	TTS (NR_158165)	TTS (NR_158165)	1359	NR_158165	107984813		NR_158165	ENSG00000259804	CTCF-DT	-	CTCF divergent transcript	ncRNA
205758	chr7	23516151	23516700	+	0	NA	exon (NM_001362759, exon 3 of 7)	exon (NM_001362759, exon 3 of 7)	15556	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
12944	chr1	110773901	110774100	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	-97199	NM_001040033	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
215347	chr7	157374471	157375330	+	0	NA	intron (NM_001363676, intron 5 of 6)	intron (NM_001363676, intron 5 of 6)	37896	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
235271	chrX	41831151	41831450	+	0	NA	intron (NM_001126055, intron 2 of 24)	MIRb|SINE|MIR	91734	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
187524	chr5	142472321	142472650	+	0	NA	Intergenic	MIRb|SINE|MIR	147192	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
170389	chr3	184810701	184811300	+	0	NA	Intergenic	AluSg|SINE|Alu	-1143	NM_001349297	23355		NM_015303	ENSG00000156931	VPS8	KIAA0804	VPS8 subunit of CORVET complex	protein-coding
96390	chr17	40128601	40128800	+	0	NA	intron (NM_001365920, intron 2 of 7)	intron (NM_001365920, intron 2 of 7)	6729	NM_001365919	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
190567	chr5	180813451	180813830	+	0	NA	intron (NM_001364380, intron 1 of 2)	LTR86B1|LTR|ERVL	1976	NM_001364382	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
193853	chr6	31541021	31543550	+	0	NA	promoter-TSS (NM_004640).5	promoter-TSS (NM_004640).5	-19	NR_133675	106478957		NR_133674	ENSG00000234006	DDX39B-AS1	-	DDX39B antisense RNA 1	ncRNA
142874	chr20	17681901	17683130	+	0	NA	promoter-TSS (NM_001365613)	promoter-TSS (NM_001365613)	-273	NM_001042576	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
215223	chr7	156616151	156617130	+	0	NA	intron (NR_026865, intron 1 of 3)	CpG	-13445	NR_103858	100506380		NM_032625	ENSG00000182648	RNF32-DT	C7orf13|LINC01006|MY040	RNF32 divergent transcript	ncRNA
160787	chr3	32954521	32954780	+	0	NA	3' UTR (NM_005508, exon 2 of 2)	3' UTR (NM_005508, exon 2 of 2)	3006	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
16625	chr1	155088351	155088650	+	0	NA	TTS (NM_004952)	TTS (NM_004952)	9663	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
95102	chr17	34626101	34627100	+	0	NA	exon (NM_001304438, exon 2 of 9)	exon (NM_001304438, exon 2 of 9)	47018	NM_001304438	124842		NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding
232554	chr9	136352771	136353130	+	0	NA	promoter-TSS (NM_001145639)	promoter-TSS (NM_001145639)	-107	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
221263	chr8	122788671	122789180	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	7270	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
226796	chr9	76906171	76906400	+	0	NA	promoter-TSS (NM_015225)	promoter-TSS (NM_015225)	-171	NM_015225	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
79314	chr16	560251	560950	+	0	NA	5' UTR (NM_145270, exon 1 of 3)	5' UTR (NM_145270, exon 1 of 3)	206	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
131212	chr2	95062951	95063530	+	0	NA	Intergenic	HAL1|LINE|L1	37532	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
160619	chr3	31508421	31509080	+	0	NA	Intergenic	Intergenic	-24175	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
52241	chr12	54404151	54405300	+	0	NA	exon (NM_002205, exon 13 of 30)	exon (NM_002205, exon 13 of 30)	-13427	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
202855	chr6	159784401	159785050	+	0	NA	TTS (NR_002965)	TTS (NR_002965)	1008	NR_002965	677812		NR_002965	ENSG00000206910	SNORA29	ACA29	small nucleolar RNA, H/ACA box 29	snoRNA
36595	chr11	6724901	6725100	+	0	NA	Intergenic	L1M3f|LINE|L1	-3121	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
128069	chr2	47862751	47863250	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluSq2|SINE|Alu	25719	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
103639	chr17	78755901	78756250	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSx1|SINE|Alu	-19173	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
233637	chrX	723571	723800	+	0	NA	Intergenic	L1MB5|LINE|L1	99341	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
208984	chr7	74212801	74213150	+	0	NA	intron (NM_014146, intron 1 of 12)	MIR3|SINE|MIR	2969	NM_014146	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
127956	chr2	46566151	46566450	+	0	NA	intron (NM_012249, intron 2 of 4)	L2c|LINE|L2	13938	NR_104182	100506142		NR_104182	ENSG00000250116	RHOQ-AS1	-	RHOQ antisense RNA 1	ncRNA
131983	chr2	100291021	100292080	+	0	NA	intron (NM_001371783, intron 10 of 12)	intron (NM_001371783, intron 10 of 12)	30951	NM_001371783	164832		NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
66047	chr14	58324071	58324230	+	0	NA	intron (NM_023000, intron 8 of 23)	AluY|SINE|Alu	25595	NM_002892	5926		NM_002892	ENSG00000032219	ARID4A	RBBP-1|RBBP1|RBP-1|RBP1	AT-rich interaction domain 4A	protein-coding
138282	chr2	203706251	203706930	+	0	NA	promoter-TSS (NM_001243077)	promoter-TSS (NM_001243077)	-49	NM_001243077	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
1428	chr1	2586201	2588450	+	0	NA	intron (NR_036638, intron 2 of 6).2	CpG-223	548	NM_001195741	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
76243	chr15	73982671	73983230	+	0	NA	TTS (NM_001324227)	TTS (NM_001324227)	9345	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
108528	chr18	74373151	74374230	+	0	NA	Intergenic	Intergenic	-35758	NR_131977	101927606		NR_131977	ENSG00000259779	LINC01922	-	long intergenic non-protein coding RNA 1922	ncRNA
77446	chr15	84246271	84246830	+	0	NA	Intergenic	Intergenic	10777	NM_001267536	643707		NM_001267536	ENSG00000184206	GOLGA6L4	-	golgin A6 family like 4	protein-coding
153842	chr22	30101801	30102200	+	0	NA	intron (NM_152510, intron 3 of 10)	AluJb|SINE|Alu	21536	NM_001329458	150280		NM_152510	ENSG00000176635	HORMAD2	CT46.2	HORMA domain containing 2	protein-coding
36560	chr11	6632521	6632980	+	0	NA	exon (NM_003737, exon 6 of 21)	exon (NM_003737, exon 6 of 21)	-13328	NM_000391	1200		NM_000391	ENSG00000166340	TPP1	CLN2|GIG1|LPIC|SCAR7|TPP-1	tripeptidyl peptidase 1	protein-coding
190710	chr6	252771	253600	+	0	NA	Intergenic	Intergenic	-38872	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
227100	chr9	85739251	85739750	+	0	NA	intron (NM_001330701, intron 1 of 25)	AluSq2|SINE|Alu	2454	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
135455	chr2	161244381	161246080	+	0	NA	intron (NR_110164, intron 1 of 1)	intron (NR_110164, intron 1 of 1)	491	NR_110163	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
28123	chr10	43412471	43412630	+	0	NA	Intergenic	AluY|SINE|Alu	-3302	NM_001098204	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
87511	chr16	71852321	71852800	+	0	NA	3' UTR (NM_001137675, exon 3 of 3)	3' UTR (NM_001137675, exon 3 of 3)	6584	NM_001137675	342371		NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1 like	protein-coding
134053	chr2	131335371	131335530	+	0	NA	Intergenic	Intergenic	28718	NM_001077637	150786		NM_001077637	ENSG00000233087	RAB6D	RAB6CL|WTH3DI	RAB6D, member RAS oncogene family	protein-coding
138913	chr2	218125831	218126230	+	0	NA	promoter-TSS (NM_001557)	promoter-TSS (NM_001557)	2	NM_001557	3579		NM_001557	ENSG00000180871	CXCR2	CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB|WHIMS2	C-X-C motif chemokine receptor 2	protein-coding
212682	chr7	129635401	129635900	+	0	NA	intron (NM_001040110, intron 1 of 10)	intron (NM_001040110, intron 1 of 10)	5572	NM_001040110	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
127606	chr2	42972101	42972300	+	0	NA	Intergenic	LTR81C|LTR|Gypsy	67343	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
201914	chr6	151384571	151384750	+	0	NA	intron (NM_020861, intron 1 of 2)	L2|LINE|L2	6899	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
25106	chr10	3945601	3946500	+	0	NA	Intergenic	Intergenic	-45110	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
168001	chr3	136787501	136788080	+	0	NA	Intergenic	ORSL|DNA|hAT-Tip100	-31229	NM_001097600	80723		NM_025246	ENSG00000168917	SLC35G2	TMEM22	solute carrier family 35 member G2	protein-coding
24050	chr1	235296621	235297100	+	0	NA	intron (NM_016374, intron 2 of 23)	(AAGG)n|Simple_repeat|Simple_repeat	-30356	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
77628	chr15	85414421	85415150	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	34182	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
136994	chr2	190537271	190537430	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-2628	NR_136298	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
113860	chr19	10650371	10651150	+	0	NA	Intergenic	AluY|SINE|Alu	3112	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
109453	chr19	757321	757580	+	0	NA	exon (NM_173481, exon 2 of 5)	exon (NM_173481, exon 2 of 5)	6338	NR_135168	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
211157	chr7	102574701	102574900	+	0	NA	Intergenic	Intergenic	-2179	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
171733	chr3	197956451	197956550	+	0	NA	3' UTR (NM_001316311, exon 5 of 5)	3' UTR (NM_001316311, exon 5 of 5)	3491	NM_032263	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
228616	chr9	105519821	105520200	+	0	NA	non-coding (NR_104269, exon 1 of 1)	non-coding (NR_104269, exon 1 of 1)	186	NR_104269	26134		NM_015639	ENSG00000229419	RALGAPA1P1	GARNL2|GARNL2P|RALGAPA1P|bA235C23.1	RALGAPA1 pseudogene 1	pseudo
128110	chr2	48144751	48145050	+	0	NA	Intergenic	L1PB1|LINE|L1	-169399	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
11928	chr1	93681601	93682000	+	0	NA	promoter-TSS (NM_003567)	promoter-TSS (NM_003567)	37	NM_003567	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
50874	chr12	49187711	49188500	+	0	NA	intron (NM_006009, intron 1 of 3)	(CA)n|Simple_repeat|Simple_repeat	975	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
229299	chr9	120846271	120847800	+	0	NA	intron (NR_152407, intron 1 of 2)	intron (NR_152407, intron 1 of 2)	353	NR_152407	253039		NR_024408	ENSG00000293514	CUTALP	PSMD5-AS1	cutA divalent cation tolerance like, pseudogene	pseudo
168334	chr3	141796021	141798980	+	0	NA	intron (NM_139209, intron 4 of 5)	CpG	34092	NM_139209	131890		NM_139209	ENSG00000114124	GRK7	GPRK7	G protein-coupled receptor kinase 7	protein-coding
237903	chrX	131768201	131768480	+	0	NA	intron (NR_152876, intron 5 of 9)	intron (NR_152876, intron 5 of 9)	62303	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
198217	chr6	98828801	98829580	+	0	NA	TTS (NR_148381)	TTS (NR_148381)	2510	NR_148381	105447646		NR_148381		PNKY	-	long intergenic non-protein coding RNA PNKY	ncRNA
139546	chr2	224886001	224886500	+	0	NA	intron (NM_001363762, intron 5 of 55)	intron (NM_001363762, intron 5 of 55)	60799	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
164611	chr3	66306851	66307630	+	0	NA	intron (NR_028475, intron 5 of 9)	L1PA8|LINE|L1	86237	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
29915	chr10	73244001	73244450	+	0	NA	3' UTR (NM_173348, exon 14 of 14)	3' UTR (NM_173348, exon 14 of 14)	3030	NM_015190	23234		NM_015190	ENSG00000213551	DNAJC9	HDJC9|JDD1|SB73	DnaJ heat shock protein family (Hsp40) member C9	protein-coding
74358	chr15	58697071	58697430	+	0	NA	intron (NM_001320570, intron 2 of 14)	L1MA4A|LINE|L1	-3643	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
3750	chr1	16648771	16648930	+	0	NA	intron (NR_027504, intron 8 of 13)	intron (NR_027504, intron 8 of 13)	3276	NR_027504	11209		NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
220583	chr8	100835221	100836050	+	0	NA	Intergenic	LTR41|LTR|ERVL	-113547	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
182623	chr5	66757351	66757530	+	0	NA	intron (NM_198828, intron 1 of 5)	intron (NM_198828, intron 1 of 5)	-71333	NM_015183	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
197496	chr6	75613401	75613950	+	0	NA	intron (NM_015571, intron 1 of 23)	L1MC4|LINE|L1	11795	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
173012	chr4	4389621	4389880	+	0	NA	intron (NM_001382227, intron 3 of 5)	intron (NM_001382227, intron 3 of 5)	2648	NM_001382227	27065		NM_014392	ENSG00000168824	NSG1	D4S234|D4S234E|NEEP21|P21	neuronal vesicle trafficking associated 1	protein-coding
130678	chr2	86444551	86444900	+	0	NA	intron (NM_001146688, intron 2 of 25)	intron (NM_001146688, intron 2 of 25)	3264	NM_001146688	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
224006	chr9	2181951	2182050	+	0	NA	intron (NM_001289400, intron 4 of 7)	intron (NM_001289400, intron 4 of 7)	23544	NM_001289400	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
191287	chr6	6588221	6588880	+	0	NA	promoter-TSS (NM_004271)	promoter-TSS (NM_004271)	-170	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
46402	chr11	126318501	126319950	+	0	NA	intron (NM_014026, intron 2 of 5)	intron (NM_014026, intron 2 of 5)	15165	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
121180	chr19	46489371	46490900	+	0	NA	intron (NM_001205281, intron 3 of 3)	intron (NM_001205281, intron 3 of 3)	5732	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
206292	chr7	30062601	30062880	+	0	NA	exon (NM_001197027, exon 12 of 14)	exon (NM_001197027, exon 12 of 14)	17655	NM_001363474	84725		NM_032639	ENSG00000106086	PLEKHA8	FAPP2	pleckstrin homology domain containing A8	protein-coding
179722	chr5	165901	166100	+	0	NA	intron (NM_052909, intron 13 of 19)	CpG	-25495	NM_001080478	389257		NM_001080478	ENSG00000185028	LRRC14B	-	leucine rich repeat containing 14B	protein-coding
237653	chrX	124263571	124264150	+	0	NA	Intergenic	L1PA16|LINE|L1	-68800	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
221686	chr8	126505751	126506530	+	0	NA	Intergenic	Intergenic	52338	NM_174911	157638		NM_174911	ENSG00000168672	LRATD2	BCMP101|FAM84B|NSE2	LRAT domain containing 2	protein-coding
47655	chr12	6311851	6312150	+	0	NA	intron (NM_001384603, intron 1 of 11)	intron (NM_001384603, intron 1 of 11)	1000	NM_001144856	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
174381	chr4	39026751	39026850	+	0	NA	intron (NM_001303228, intron 1 of 6)	AluSz6|SINE|Alu	5609	NM_024943	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
140453	chr2	233161501	233162130	+	0	NA	exon (NM_005541, exon 11 of 27).2	exon (NM_005541, exon 11 of 27).2	-89756	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
20950	chr1	202283171	202283930	+	0	NA	intron (NM_021636, intron 6 of 17)	intron (NM_021636, intron 6 of 17)	58386	NM_014176	29089		NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding
346	chr1	1004751	1005950	+	0	NA	Intergenic	Intergenic	-5253	NM_001142467	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
61138	chr13	48586601	48587280	+	0	NA	Intergenic	Intergenic	-6039	NR_051983	100129597		NR_051983	ENSG00000233610	LINC00462	-	long intergenic non-protein coding RNA 462	ncRNA
31207	chr10	91247501	91247700	+	0	NA	intron (NM_032373, intron 3 of 9)	intron (NM_032373, intron 3 of 9)	26937	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
146348	chr20	49247651	49247750	+	0	NA	exon (NM_021035, exon 14 of 14)	exon (NM_021035, exon 14 of 14)	28284	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
171634	chr3	197555701	197556680	+	0	NA	promoter-TSS (NM_004051)	promoter-TSS (NM_004051)	-222	NM_004051	622		NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding
52958	chr12	57465651	57465900	+	0	NA	intron (NM_001160045, intron 4 of 9)	intron (NM_001160045, intron 4 of 9)	5624	NM_001167609	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
91977	chr17	7413901	7414280	+	0	NA	intron (NM_020795, intron 2 of 6)	intron (NM_020795, intron 2 of 6)	-6234	NM_199339	374768		NM_199339	ENSG00000181323	SPEM1	C17orf83	spermatid maturation 1	protein-coding
197837	chr6	88165721	88166080	+	0	NA	5' UTR (NM_001160259, exon 1 of 2)	5' UTR (NM_001160259, exon 1 of 2)	447	NM_001365872	1268		NM_016083	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1	protein-coding
181908	chr5	54648601	54649200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	54424	NR_104659	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
85744	chr16	56701721	56702500	+	0	NA	Intergenic	Intergenic	19640	NM_005952	4501		NM_005952	ENSG00000187193	MT1X	MT-1l|MT1	metallothionein 1X	protein-coding
14726	chr1	145977221	145978300	+	0	NA	intron (NM_032305, intron 5 of 7)	intron (NM_032305, intron 5 of 7)	13070	NM_032305	84265		NM_032305	ENSG00000121851	POLR3GL	RPC32HOM|SOFM|flj32422	RNA polymerase III subunit GL	protein-coding
168280	chr3	141490271	141491580	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	3898	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
18180	chr1	160813201	160813700	+	0	NA	intron (NM_001261456, intron 2 of 9)	L2c|LINE|L2	17276	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
237754	chrX	129677771	129678930	+	0	NA	Intergenic	CpG	-23394	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
61831	chr13	75841971	75842130	+	0	NA	intron (NM_001330583, intron 22 of 28)	L2a|LINE|L2	-28988	NR_164111	729420		NM_001257995	ENSG00000178734	LMO7DN	C13orf45	LMO7 downstream neighbor	ncRNA
44325	chr11	102403551	102403850	+	0	NA	intron (NM_052932, intron 2 of 4)	MSTB2|LTR|ERVL-MaLR	49065	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
65839	chr14	54902701	54903900	+	0	NA	promoter-TSS (NM_001024071)	promoter-TSS (NM_001024071)	-474	NM_001024071	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
185282	chr5	126437921	126438680	+	0	NA	intron (NR_146195, intron 1 of 15)	intron (NR_146195, intron 1 of 15)	14891	NM_001349542	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
120815	chr19	45482101	45482720	+	0	NA	Intergenic	AluY|SINE|Alu	10843	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
57613	chr12	122475251	122475350	+	0	NA	intron (NM_017612, intron 13 of 13)	AluSz|SINE|Alu	25632	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
161210	chr3	39173971	39174130	+	0	NA	Intergenic	L1PREC2|LINE|L1	18545	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
236144	chrX	63525521	63525980	+	0	NA	intron (NR_152610, intron 1 of 4)	intron (NR_152610, intron 1 of 4)	35345	NR_152610	92249		NR_015353	ENSG00000235437	LINC01278	-	long intergenic non-protein coding RNA 1278	ncRNA
182724	chr5	68258021	68258280	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-30369	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
188455	chr5	154482351	154483130	+	0	NA	Intergenic	CpG	-4513	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
215841	chr8	6840771	6841200	+	0	NA	intron (NR_045217, intron 2 of 2)	intron (NR_045217, intron 2 of 2)	5431	NR_045217	100652791		NR_045217	ENSG00000245857	GS1-24F4.2	-	uncharacterized LOC100652791	ncRNA
44473	chr11	105032521	105032880	+	0	NA	intron (NM_033294, intron 2 of 7)	L2|LINE|L2	2444	NM_001257119	834		NM_001223	ENSG00000137752	CASP1	ICE|IL1BC|P45	caspase 1	protein-coding
181658	chr5	50418901	50419100	+	0	NA	intron (NM_198449, intron 2 of 8)	intron (NM_198449, intron 2 of 8)	22288	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
62493	chr13	99418701	99419200	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	62819	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
185913	chr5	132822451	132822750	+	0	NA	3' UTR (NM_001172700, exon 10 of 10)	3' UTR (NM_001172700, exon 10 of 10)	3710	NM_133456	134549		NM_133456	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
119045	chr19	39052301	39052730	+	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-19966	NM_178820	126433		NM_178820	ENSG00000161243	FBXO27	FBG5|Fbx27	F-box protein 27	protein-coding
25939	chr10	11344521	11344880	+	0	NA	promoter-TSS (NR_126062)	promoter-TSS (NR_126062)	-26	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
171116	chr3	195527471	195528030	+	0	NA	intron (NM_006241, intron 2 of 5)	FAM|SINE|Alu	15575	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
21931	chr1	207860621	207860880	+	0	NA	Intergenic	L2a|LINE|L2	-38047	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
141727	chr2	241861871	241862350	+	0	NA	Intergenic	Intergenic	-3216	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
83417	chr16	27227351	27227650	+	0	NA	intron (NM_145080, intron 5 of 7)	intron (NM_145080, intron 5 of 7)	23525	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
125417	chr2	11753151	11755250	+	0	NA	intron (NM_001349205, intron 1 of 21)	intron (NM_001349205, intron 1 of 21)	5667	NM_001349205	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
91624	chr17	5395571	5395930	+	0	NA	intron (NM_002532, intron 8 of 16)	AluSx|SINE|Alu	-23891	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
8399	chr1	40395951	40396600	+	0	NA	promoter-TSS (NM_001198980)	promoter-TSS (NM_001198980)	-525	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
181371	chr5	40605371	40606380	+	0	NA	Intergenic	Intergenic	-74040	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
137302	chr2	195656351	195657700	+	0	NA	promoter-TSS (NM_020342)	promoter-TSS (NM_020342)	67	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
22422	chr1	220092471	220092630	+	0	NA	Intergenic	AluJr|SINE|Alu	-1582	NM_018060	55699		NM_018060	ENSG00000067704	IARS2	CAGSSS|ILERS	isoleucyl-tRNA synthetase 2, mitochondrial	protein-coding
152524	chr22	20967171	20967330	+	0	NA	promoter-TSS (NR_027464)	promoter-TSS (NR_027464)	-5	NR_027464	150209		NM_144704	ENSG00000183773	AIFM3	AIFL	apoptosis inducing factor mitochondria associated 3	protein-coding
43841	chr11	87097451	87097830	+	0	NA	intron (NM_001168724, intron 4 of 13)	L2a|LINE|L2	59706	NM_001168724	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
198030	chr6	90156851	90157500	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	139668	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
37583	chr11	19280721	19281430	+	0	NA	Intergenic	Intergenic	-39420	NM_001256372	79733		NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
60850	chr13	45489071	45489430	+	0	NA	intron (NM_031431, intron 8 of 22)	intron (NM_031431, intron 8 of 22)	24311	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
178186	chr4	142393551	142394050	+	0	NA	intron (NR_169599, intron 3 of 22)	MER57A1|LTR|ERV1	9333	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
122819	chr19	50391821	50392280	+	0	NA	intron (NR_046402, intron 1 of 25)	intron (NR_046402, intron 1 of 25)	-6802	NM_001308632	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
204965	chr7	6375451	6376400	+	0	NA	intron (NM_018890, intron 1 of 6)	intron (NM_018890, intron 1 of 6)	1398	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
25288	chr10	6165851	6166180	+	0	NA	intron (NM_001282630, intron 1 of 14)	AluSx1|SINE|Alu	-13753	NR_039698	100628560		NR_039698	ENSG00000283634	MIR3155B	hsa-mir-3155b	microRNA 3155b	ncRNA
154344	chr22	32420201	32420400	+	0	NA	intron (NM_174932, intron 11 of 14)	AluYm1|SINE|Alu	-8053	NM_014306	51493		NM_014306	ENSG00000100220	RTCB	C22orf28|DJ149A16.6|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding
43148	chr11	75317771	75317930	+	0	NA	intron (NM_020251, intron 1 of 14)	MIRb|SINE|MIR	17336	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
11364	chr1	89634501	89634700	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	1480	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
36829	chr11	9859771	9860200	+	0	NA	intron (NM_030962, intron 17 of 39)	intron (NM_030962, intron 17 of 39)	20843	NR_120539	101928008		NR_120539	ENSG00000255476	LOC101928008	-	uncharacterized LOC101928008	ncRNA
183897	chr5	87375821	87376080	+	0	NA	intron (NM_022650, intron 15 of 24)	L2c|LINE|L2	36954	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
169518	chr3	170040101	170040530	+	0	NA	intron (NM_014373, intron 2 of 3)	intron (NM_014373, intron 2 of 3)	2320	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
69815	chr14	99213451	99214080	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	58432	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
176238	chr4	86595071	86595230	+	0	NA	intron (NM_080683, intron 1 of 47)	intron (NM_080683, intron 1 of 47)	835	NM_080684	5783		NM_006264	ENSG00000163629	PTPN13	FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E	protein tyrosine phosphatase non-receptor type 13	protein-coding
228134	chr9	96719721	96720180	+	0	NA	Intergenic	CpG	-5871	NR_026792	441455		NR_026792		LOC441455	-	makorin ring finger protein 1 pseudogene	pseudo
130351	chr2	85010201	85010600	+	0	NA	intron (NM_020122, intron 1 of 6)	AluSz|SINE|Alu	39239	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
183436	chr5	78796951	78797050	+	0	NA	intron (NM_000046, intron 6 of 7)	AluYa5|SINE|Alu	-148228	NM_005779	10184		NM_005779	ENSG00000145685	LHFPL2	-	LHFPL tetraspan subfamily member 2	protein-coding
13533	chr1	115062541	115064030	+	0	NA	intron (NM_001308315, intron 2 of 6)	L1PA16|LINE|L1	26215	NM_001308315	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
217328	chr8	27466801	27467000	+	0	NA	intron (NM_001282455, intron 5 of 6)	intron (NM_001282455, intron 5 of 6)	12361	NM_000742	1135		NM_000742	ENSG00000120903	CHRNA2	-	cholinergic receptor nicotinic alpha 2 subunit	protein-coding
161037	chr3	38001351	38002200	+	0	NA	exon (NM_001370265, exon 9 of 16)	exon (NM_001370265, exon 9 of 16)	7637	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
71882	chr15	22469751	22470050	+	0	NA	Intergenic	Intergenic	12474	NR_036470	100132101		NR_036470		HERC2P7	-	HERC2 pseudogene 7	pseudo
148629	chr21	5709601	5710550	+	0	NA	Intergenic	Intergenic	140871	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
206127	chr7	27576401	27576600	+	0	NA	intron (NM_152740, intron 4 of 7)	intron (NM_152740, intron 4 of 7)	-39474	NR_122123	790953		NR_122122		TSL	-	testis-expressed, seven-twelve, leukemia	ncRNA
136129	chr2	173960751	173961580	+	0	NA	intron (NM_001172712, intron 3 of 6)	UCON55|DNA|TcMar-Tigger	2715	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
92426	chr17	8413001	8413600	+	0	NA	Intergenic	Intergenic	-15473	NM_001146684	643904		NM_001146684	ENSG00000189051	RNF222	-	ring finger protein 222	protein-coding
32119	chr10	101225451	101225930	+	0	NA	Intergenic	CpG	3270	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
42187	chr11	67983721	67983980	+	0	NA	Intergenic	SATR1|Satellite|Satellite	20247	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
197468	chr6	75281751	75282430	+	0	NA	intron (NM_018247, intron 1 of 6)	intron (NM_018247, intron 1 of 6)	2702	NM_018247	55754		NM_018247	ENSG00000112697	TMEM30A	C6orf67|CDC50A	transmembrane protein 30A	protein-coding
96020	chr17	39238151	39239200	+	0	NA	intron (NR_164152, intron 2 of 9)	intron (NR_164152, intron 2 of 9)	905	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
143538	chr20	31575971	31576750	+	0	NA	Intergenic	AluJr|SINE|Alu	-3097	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
63268	chr13	113956751	113956850	+	0	NA	exon (NM_001365455, exon 7 of 7)	exon (NM_001365455, exon 7 of 7)	17276	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
186254	chr5	134507471	134507630	+	0	NA	intron (NR_105045, intron 1 of 1)	intron (NR_105045, intron 1 of 1)	998	NR_105045	101927934		NR_105045	ENSG00000251169	LINC01843	Lnc-APUE	long intergenic non-protein coding RNA 1843	ncRNA
6804	chr1	30905951	30906450	+	0	NA	intron (NM_014654, intron 1 of 4)	intron (NM_014654, intron 1 of 4)	2558	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
94299	chr17	28732401	28732600	+	0	NA	intron (NM_178170, intron 1 of 14)	L2a|LINE|L2	3712	NM_178170	284086		NM_178170	ENSG00000160602	NEK8	JCK|NEK12A|NPHP9|RHPD2	NIMA related kinase 8	protein-coding
29727	chr10	72086651	72087900	+	0	NA	intron (NM_001134434, intron 2 of 2)	CpG	1276	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
125591	chr2	16667271	16667630	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-1616	NM_030797	81553		NM_030797	ENSG00000197872	CYRIA	CYRI-A|FAM49A	CYFIP related Rac1 interactor A	protein-coding
116432	chr19	18019571	18019730	+	0	NA	Intergenic	AluSq2|SINE|Alu	11480	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
16752	chr1	155320421	155321080	+	0	NA	promoter-TSS (NM_001105204)	promoter-TSS (NM_001105204)	-144	NM_001105204	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
38842	chr11	47323001	47323300	+	0	NA	intron (NR_164842, intron 29 of 33)	AluSz|SINE|Alu	29552	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
74196	chr15	55829851	55830330	+	0	NA	intron (NR_104302, intron 20 of 20)	intron (NR_104302, intron 20 of 20)	-86938	NM_173814	283659		NM_173814	ENSG00000166450	PRTG	IGDCC5	protogenin	protein-coding
204851	chr7	5793671	5793830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-12087	NM_207116	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
155286	chr22	38105921	38106280	+	0	NA	intron (NM_025045, intron 4 of 13)	intron (NM_025045, intron 4 of 13)	4584	NM_025045	80115		NM_025045	ENSG00000128298	BAIAP2L2	-	BAR/IMD domain containing adaptor protein 2 like 2	protein-coding
29630	chr10	71810651	71810950	+	0	NA	intron (NM_001171933, intron 15 of 22)	AluSx|SINE|Alu	-1083	NM_001171936	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
192985	chr6	28082471	28082630	+	0	NA	intron (NM_003447, intron 1 of 3)	MER9a3|LTR|ERVK	1982	NM_001376492	7718		NM_003447	ENSG00000197279	ZNF165	CT53|LD65|ZSCAN7	zinc finger protein 165	protein-coding
88076	chr16	81478151	81478250	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-17154	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
198854	chr6	109375401	109375800	+	0	NA	intron (NM_001142401, intron 3 of 4)	AluSx1|SINE|Alu	6139	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
78509	chr15	92934971	92935130	+	0	NA	intron (NM_001042572, intron 5 of 12)	AluY|SINE|Alu	30651	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
138105	chr2	202273801	202274080	+	0	NA	intron (NM_015934, intron 1 of 14)	AluSx|SINE|Alu	-2491	NR_003058	692110		NR_003058	ENSG00000212534	SNORD70	HBII-234|SNORD70A	small nucleolar RNA, C/D box 70	snoRNA
146605	chr20	50145871	50146030	+	0	NA	intron (NM_199129, intron 1 of 5)	MIRb|SINE|MIR	7773	NM_001162505	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
210335	chr7	99501351	99502280	+	0	NA	Intergenic	Intergenic	-1507	NM_001345968	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
222353	chr8	133560521	133560780	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	11237	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
212033	chr7	114935371	114935530	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	13296	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
220055	chr8	93748351	93748850	+	0	NA	Intergenic	L2c|LINE|L2	-6244	NM_001142301	91147		NM_153704	ENSG00000164953	TMEM67	JBTS6|MECKELIN|MKS3|NPHP11|TNEM67	transmembrane protein 67	protein-coding
2069	chr1	7930541	7931800	+	0	NA	intron (NM_001561, intron 7 of 7)	L1ME3B|LINE|L1	9669	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
81560	chr16	9123951	9124500	+	0	NA	Intergenic	Intergenic	32581	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
72998	chr15	40676771	40676930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	18255	NR_040058	100505648		NR_040058	ENSG00000245849	RAD51-AS1	TODRA	RAD51 antisense RNA 1	ncRNA
66451	chr14	61544351	61544680	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	25679	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
146955	chr20	52399421	52399880	+	0	NA	Intergenic	L2a|LINE|L2	-207665	NM_199427	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
56122	chr12	110781671	110781830	+	0	NA	Intergenic	Intergenic	-38859	NM_002710	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
88283	chr16	83928271	83928430	+	0	NA	Intergenic	Intergenic	-24890	NM_182981	29948		NM_013370	ENSG00000140961	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
129074	chr2	65095171	65095330	+	0	NA	intron (NM_004161, intron 3 of 5)	AluJo|SINE|Alu	34856	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
4796	chr1	23576571	23576830	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-17199	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
99527	chr17	50348651	50350150	+	0	NA	intron (NM_022167, intron 1 of 10)	intron (NM_022167, intron 1 of 10)	3274	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
81595	chr16	10385551	10386390	+	0	NA	promoter-TSS (NM_001256160)	promoter-TSS (NM_001256160)	-91	NM_024997	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
238737	chrX	154284541	154285650	+	0	NA	intron (NM_001205201, intron 3 of 4)	AluJb|SINE|Alu	10006	NM_001586	1527		NM_001586	ENSG00000278057	TEX28	CXorf2|MRX99|TEX28P1|TEX28P2|fTEX	testis expressed 28	protein-coding
108739	chr18	77103701	77104350	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	28758	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
156860	chr22	42072651	42073300	+	0	NA	Intergenic	L2a|LINE|L2	-1273	NM_001002034	150368		NM_001002034	ENSG00000177096	PHETA2	FAM109B|IPIP27B|Ses2	PH domain containing endocytic trafficking adaptor 2	protein-coding
167357	chr3	128768421	128769100	+	0	NA	intron (NM_004637, intron 1 of 5)	AluJr|SINE|Alu	42577	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
133914	chr2	130340871	130341030	+	0	NA	exon (NM_001321118, exon 4 of 5)	exon (NM_001321118, exon 4 of 5)	1214	NM_032357	84317		NM_032357	ENSG00000136710	CCDC115	CDG2O|ccp1	coiled-coil domain containing 115	protein-coding
204300	chr7	2677751	2678550	+	0	NA	Intergenic	Intergenic	-1372	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
52812	chr12	56836871	56837330	+	0	NA	Intergenic	MER50-int|LTR|ERV1	73776	NM_003725	8630		NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid 17-beta dehydrogenase 6	protein-coding
206974	chr7	38311301	38311930	+	0	NA	Intergenic	CpG	-29962	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
35711	chr11	1937771	1938000	+	0	NA	intron (NM_001363561, intron 16 of 16)	CpG	-9447	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
41787	chr11	66853271	66854200	+	0	NA	intron (NM_022172, intron 10 of 20)	intron (NM_022172, intron 10 of 20)	-3329	NM_024036	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
31719	chr10	97680521	97681430	+	0	NA	intron (NM_021732, intron 1 of 2)	intron (NM_021732, intron 1 of 2)	6266	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
176149	chr4	83185801	83186000	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-71171	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
229277	chr9	120583721	120584320	+	0	NA	Intergenic	Intergenic	-3850	NM_001272039	55755		NM_018249	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
54398	chr12	89948801	89949230	+	0	NA	intron (NR_135019, intron 2 of 2)	intron (NR_135019, intron 2 of 2)	1322	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
190548	chr5	180786801	180787650	+	0	NA	3' UTR (NM_002406, exon 2 of 2)	3' UTR (NM_002406, exon 2 of 2)	15581	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
215368	chr7	157397901	157398300	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	61096	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
114534	chr19	12839121	12839750	+	0	NA	intron (NM_014975, intron 1 of 25)	intron (NM_014975, intron 1 of 25)	920	NM_014975	22983		NM_014975	ENSG00000105613	MAST1	MCCCHCM|SAST	microtubule associated serine/threonine kinase 1	protein-coding
221328	chr8	123084801	123085000	+	0	NA	intron (NM_145647, intron 4 of 21)	AluSz|SINE|Alu	11651	NM_001363149	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
177759	chr4	122665521	122665780	+	0	NA	intron (NR_104126, intron 10 of 10)	intron (NR_104126, intron 10 of 10)	-44584	NM_021803	59067		NM_021803	ENSG00000138684	IL21	CVID11|IL-21|Za11	interleukin 21	protein-coding
199676	chr6	122469051	122470380	+	0	NA	intron (NM_020755, intron 1 of 9)	AluSz|SINE|Alu	2092	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
203983	chr7	1669921	1670730	+	0	NA	Intergenic	CpG	-17794	NM_001128636	392617		NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
200698	chr6	137353471	137353830	+	0	NA	Intergenic	Intergenic	-134265	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
145006	chr20	37651871	37652130	+	0	NA	Intergenic	Intergenic	-24910	NR_040021	100287792		NM_001001690	ENSG00000204117	LOC100287792	-	uncharacterized LOC100287792	ncRNA
95968	chr17	39150201	39150400	+	0	NA	intron (NM_020405, intron 1 of 13)	intron (NM_020405, intron 1 of 13)	1337	NM_020405	57125		NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
1290	chr1	2332721	2333380	+	0	NA	intron (NM_024848, intron 12 of 13)	intron (NM_024848, intron 12 of 13)	19611	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
96875	chr17	42071801	42072150	+	0	NA	intron (NM_001378270, intron 1 of 8)	intron (NM_001378270, intron 1 of 8)	-21374	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
16556	chr1	154967171	154967330	+	0	NA	intron (NM_001130041, intron 8 of 12)	intron (NM_001130041, intron 8 of 12)	3497	NM_001130040	6464		NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding
176092	chr4	82902251	82902550	+	0	NA	intron (NM_024672, intron 1 of 4)	intron (NM_024672, intron 1 of 4)	-1484	NR_034076	100499177		NR_034075	ENSG00000251022	THAP9-AS1	-	THAP9 antisense RNA 1	ncRNA
58149	chr12	124923351	124923450	+	0	NA	Intergenic	AluSz|SINE|Alu	7853	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
101637	chr17	68236871	68238290	+	0	NA	intron (NM_001346472, intron 2 of 7)	intron (NM_001346472, intron 2 of 7)	-9994	NM_001346474	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
231639	chr9	131602501	131602700	+	0	NA	intron (NM_005312, intron 11 of 23)	MIRb|SINE|MIR	48803	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
203212	chr6	167851401	167851600	+	0	NA	intron (NM_001291964, intron 1 of 32)	intron (NM_001291964, intron 1 of 32)	23865	NM_001291964	4301		NM_005936	ENSG00000130396	AFDN	AF6|MLL-AF6|MLLT4|l-afadin	afadin, adherens junction formation factor	protein-coding
19578	chr1	179251851	179252050	+	0	NA	Intergenic	Intergenic	-22266	NM_001136001	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
136272	chr2	174685151	174685900	+	0	NA	Intergenic	MER41A|LTR|ERV1	-2612	NM_001375835	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
195428	chr6	36953721	36954780	+	0	NA	promoter-TSS (NM_153370)	promoter-TSS (NM_153370)	-488	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
130800	chr2	86941921	86942280	+	0	NA	promoter-TSS (NM_001382344)	promoter-TSS (NM_001382344)	-18	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
146861	chr20	51458671	51458830	+	0	NA	intron (NM_173091, intron 5 of 9)	AluSc5|SINE|Alu	-5773	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
108951	chr18	79511601	79511800	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-67582	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
214510	chr7	150477521	150477980	+	0	NA	exon (NM_175571, exon 5 of 5)	exon (NM_175571, exon 5 of 5)	27120	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
122952	chr19	50723421	50723800	+	0	NA	exon (NM_002975, exon 1 of 4)	exon (NM_002975, exon 1 of 4)	246	NM_002975	6320		NM_002975	ENSG00000105472	CLEC11A	CLECSF3|LSLCL|P47|SCGF	C-type lectin domain containing 11A	protein-coding
104011	chr17	80108401	80108800	+	0	NA	exon (NM_001079804, exon 7 of 20)	exon (NM_001079804, exon 7 of 20)	7019	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
54156	chr12	76586851	76587380	+	0	NA	Intergenic	Intergenic	-27344	NM_001319653	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
161128	chr3	38438301	38439100	+	0	NA	Intergenic	LTR12|LTR|ERV1	-15190	NM_001106	93		NM_001106	ENSG00000114739	ACVR2B	ACTRIIB|ActR-IIB|HTX4	activin A receptor type 2B	protein-coding
226747	chr9	76028401	76028830	+	0	NA	intron (NM_006200, intron 5 of 20)	LTR8|LTR|ERV1	137942	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
8483	chr1	40815471	40815630	+	0	NA	intron (NM_172163, intron 1 of 12)	intron (NM_172163, intron 1 of 12)	31763	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
40462	chr11	64222701	64222930	+	0	NA	TTS (NM_001160389)	TTS (NM_001160389)	3054	NM_001160393	83707		NM_031472	ENSG00000149743	TRPT1	-	tRNA phosphotransferase 1	protein-coding
5634	chr1	26191501	26191900	+	0	NA	intron (NM_198137, intron 2 of 9)	intron (NM_198137, intron 2 of 9)	1098	NM_198137	378807		NM_198137	ENSG00000188782	CATSPER4	-	cation channel sperm associated 4	protein-coding
170632	chr3	187028971	187029630	+	0	NA	intron (NM_003032, intron 1 of 6)	L2|LINE|L2	7445	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
227157	chr9	86350971	86351530	+	0	NA	intron (NM_024617, intron 2 of 26)	AluSz|SINE|Alu	3160	NM_001185074	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
215396	chr7	157487701	157487900	+	0	NA	intron (NR_110157, intron 2 of 3)	intron (NR_110157, intron 2 of 3)	21569	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
233930	chrX	2264671	2265530	+	0	NA	intron (NM_145177, intron 5 of 6)	intron (NM_145177, intron 5 of 6)	235439	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
206038	chr7	27095451	27097280	+	0	NA	promoter-TSS (NM_005522)	promoter-TSS (NM_005522)	271	NR_038367	100506311		NR_038366	ENSG00000233429	HOTAIRM1	HOXA-AS1|HOXA1-AS1|NCRNA00179	HOXA transcript antisense RNA, myeloid-specific 1	ncRNA
76284	chr15	74132521	74133030	+	0	NA	exon (NM_020851, exon 3 of 3)	exon (NM_020851, exon 3 of 3)	2189	NM_020851	57611		NM_020851	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine rich repeat 2	protein-coding
122602	chr19	49768401	49768730	+	0	NA	intron (NM_014203, intron 1 of 23)	intron (NM_014203, intron 1 of 23)	1564	NM_014203	160		NM_014203	ENSG00000196961	AP2A1	ADTAA|AP2-ALPHA|CLAPA1	adaptor related protein complex 2 subunit alpha 1	protein-coding
139742	chr2	229853451	229853550	+	0	NA	intron (NM_001348327, intron 4 of 41)	AluSz6|SINE|Alu	68179	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
100160	chr17	58615601	58615800	+	0	NA	intron (NM_198393, intron 7 of 32)	L2|LINE|L2	-71372	NM_001368771	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
108601	chr18	75228951	75229050	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	18203	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
117180	chr19	19356571	19356880	+	0	NA	3' UTR (NM_015329, exon 19 of 19)	3' UTR (NM_015329, exon 19 of 19)	-29118	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
34692	chr10	133391871	133392630	+	0	NA	TTS (NM_152911)	TTS (NM_152911)	-1907	NM_138384	92170		NM_138384	ENSG00000148824	MTG1	GTP|GTPBP7	mitochondrial ribosome associated GTPase 1	protein-coding
189863	chr5	177279401	177279600	+	0	NA	intron (NM_172349, intron 18 of 23)	AluSx|SINE|Alu	24219	NM_001031677	53917		NM_130781	ENSG00000169228	RAB24	-	RAB24, member RAS oncogene family	protein-coding
153432	chr22	25066201	25066400	+	0	NA	intron (NM_001145206, intron 4 of 10)	AluJr|SINE|Alu	38326	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
200666	chr6	137155621	137156100	+	0	NA	intron (NM_181310, intron 3 of 4)	intron (NM_181310, intron 3 of 4)	17784	NM_181309	116379		NM_052962	ENSG00000164485	IL22RA2	CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16	interleukin 22 receptor subunit alpha 2	protein-coding
217686	chr8	30116101	30116950	+	0	NA	intron (NM_001128208, intron 3 of 3)	MER1B|DNA|hAT-Charlie	21117	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
8820	chr1	42952351	42954300	+	0	NA	intron (NM_006516, intron 1 of 9)	intron (NM_006516, intron 1 of 9)	5543	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
92847	chr17	16229471	16230650	+	0	NA	intron (NM_004278, intron 1 of 6)	AluSc|SINE|Alu	12850	NM_004278	9487		NM_004278	ENSG00000108474	PIGL	CHIME	phosphatidylinositol glycan anchor biosynthesis class L	protein-coding
201563	chr6	149315701	149315900	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	-1912	NM_001292034	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
179526	chr4	184825141	184827500	+	0	NA	promoter-TSS (NM_001286711)	promoter-TSS (NM_001286711)	-352	NM_001381885	2180		NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long chain family member 1	protein-coding
123364	chr19	53890901	53891100	+	0	NA	intron (NM_001316329, intron 5 of 18)	AluSx|SINE|Alu	8803	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
138564	chr2	207692221	207692500	+	0	NA	Intergenic	Intergenic	-19180	NM_001142300	151195		NM_152523	ENSG00000163249	CCNYL1	-	cyclin Y like 1	protein-coding
80494	chr16	2713501	2713700	+	0	NA	exon (NM_031948, exon 5 of 6)	exon (NM_031948, exon 5 of 6)	6624	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
93888	chr17	21213621	21215280	+	0	NA	promoter-TSS (NM_003876)	promoter-TSS (NM_003876)	-289	NM_003876	8834		NM_003876	ENSG00000178307	TMEM11	C17orf35|PM1|PMI	transmembrane protein 11	protein-coding
14522	chr1	144842221	144842680	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	124279	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
190989	chr6	3028071	3028450	+	0	NA	TTS (NR_152848)	TTS (NR_152848)	4197	NR_152848	101927759		NR_132750		LOC101927759	-	uncharacterized LOC101927759	ncRNA
95324	chr17	35733171	35733330	+	0	NA	intron (NM_033315, intron 1 of 3)	intron (NM_033315, intron 1 of 3)	1611	NM_033315	91608		NM_033315	ENSG00000270885	RASL10B	RRP17|VTS58635	RAS like family 10 member B	protein-coding
212339	chr7	127429871	127430030	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-37242	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
222059	chr8	130306251	130306350	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-9767	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
83650	chr16	28311871	28312850	+	0	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	19835	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
108865	chr18	79379971	79380150	+	0	NA	Intergenic	Intergenic	-15870	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
162153	chr3	46969171	46969530	+	0	NA	intron (NM_144716, intron 2 of 7)	AluJo|SINE|Alu	7151	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
159161	chr3	12798871	12799030	+	0	NA	intron (NM_012298, intron 1 of 12)	intron (NM_012298, intron 1 of 12)	2270	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
62738	chr13	106536401	106536880	+	0	NA	promoter-TSS (NM_001372058)	promoter-TSS (NM_001372058)	-978	NM_001372058	1948		NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5|ephrin-B2	ephrin B2	protein-coding
214767	chr7	151084801	151085300	+	0	NA	promoter-TSS (NM_001350104)	promoter-TSS (NM_001350104)	-817	NM_001281300	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
177931	chr4	133149001	133149250	+	0	NA	promoter-TSS (NR_125885)	promoter-TSS (NR_125885)	-9	NR_125885	101927359		NR_125885	ENSG00000250241	PCDH10-DT	-	PCDH10 divergent transcript	ncRNA
12983	chr1	110902271	110902430	+	0	NA	Intergenic	Intergenic	29202	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
129938	chr2	73823921	73824400	+	0	NA	Intergenic	Intergenic	-4751	NM_001353969	10617		NM_006463	ENSG00000124356	STAMBP	AMSH|MICCAP	STAM binding protein	protein-coding
149160	chr21	17807321	17807580	+	0	NA	intron (NM_017447, intron 2 of 4)	MSTA|LTR|ERVL-MaLR	11906	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
85056	chr16	31988971	31989480	+	0	NA	Intergenic	Intergenic	115418	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
62569	chr13	99969921	99971630	+	0	NA	exon (NM_033132, exon 1 of 2)	exon (NM_033132, exon 1 of 2)	1134	NR_146224	85416		NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
128228	chr2	54114851	54116500	+	0	NA	promoter-TSS (NM_001320590)	promoter-TSS (NM_001320590)	60	NM_001320589	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
93181	chr17	17802851	17803250	+	0	NA	intron (NM_030665, intron 3 of 5)	AluSx|SINE|Alu	10495	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
103382	chr17	78142801	78143130	+	0	NA	TTS (NM_152468)	TTS (NM_152468)	-3420	NM_001163075	100141515		NM_001163075	ENSG00000187997	C17orf99	IL-40|UNQ464	chromosome 17 open reading frame 99	protein-coding
132581	chr2	106513151	106514400	+	0	NA	intron (NM_001368307, intron 5 of 5)	intron (NM_001368307, intron 5 of 5)	26411	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
15664	chr1	150922121	150922850	+	0	NA	Intergenic	Intergenic	-3778	NM_001366417	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
186817	chr5	139389371	139390780	+	0	NA	promoter-TSS (NM_016459)	promoter-TSS (NM_016459)	-162	NM_016459	51237		NM_016459	ENSG00000170476	MZB1	MEDA-7|PACAP|pERp1	marginal zone B and B1 cell specific protein	protein-coding
231701	chr9	131723451	131723950	+	0	NA	intron (NM_001377935, intron 1 of 26)	L1MB3|LINE|L1	13747	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
183879	chr5	87280751	87281050	+	0	NA	intron (NM_022650, intron 1 of 24)	AluYh3|SINE|Alu	11963	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
191051	chr6	3253201	3253580	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-5557	NM_001135750	389362		NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
181899	chr5	54605951	54606050	+	0	NA	Intergenic	Intergenic	88241	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
130214	chr2	84678401	84678600	+	0	NA	intron (NM_001370, intron 41 of 76)	intron (NM_001370, intron 41 of 76)	162002	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
43212	chr11	75429701	75431280	+	0	NA	exon (NM_001039548, exon 1 of 6)	exon (NM_001039548, exon 1 of 6)	139	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
139597	chr2	225001651	225003150	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	8140	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
84100	chr16	29636201	29636700	+	0	NA	Intergenic	Intergenic	-22733	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
209599	chr7	77558501	77558700	+	0	NA	intron (NM_001131008, intron 1 of 17)	MER68|LTR|ERVL	20557	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
84468	chr16	30465801	30466530	+	0	NA	Intergenic	AluJb|SINE|Alu	-6577	NM_002209	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
169740	chr3	172511921	172512660	+	0	NA	intron (NM_003810, intron 2 of 4)	intron (NM_003810, intron 2 of 4)	11140	NM_001190943	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
85783	chr16	56942771	56943350	+	0	NA	intron (NM_014685, intron 7 of 7)	intron (NM_014685, intron 7 of 7)	10918	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
166543	chr3	115099201	115099400	+	0	NA	intron (NM_001348800, intron 1 of 11)	intron (NM_001348800, intron 1 of 11)	1008	NM_001348805	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
54028	chr12	75508821	75509780	+	0	NA	intron (NM_007043, intron 1 of 9)	MER5A|DNA|hAT-Charlie	2309	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
197447	chr6	73855021	73855300	+	0	NA	Intergenic	Intergenic	158957	NM_133493	135228		NM_133493	ENSG00000156535	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
186311	chr5	134578921	134580530	+	0	NA	3' UTR (NM_015288, exon 11 of 11)	3' UTR (NM_015288, exon 11 of 11)	53103	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
3445	chr1	15904371	15904950	+	0	NA	intron (NM_015001, intron 3 of 14)	intron (NM_015001, intron 3 of 14)	-56513	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
199649	chr6	122399201	122401130	+	0	NA	intron (NM_001135564, intron 1 of 11)	CpG	513	NM_001243094	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
194981	chr6	35355271	35355650	+	0	NA	intron (NM_001171819, intron 2 of 6)	AluJb|SINE|Alu	12902	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
217263	chr8	27325001	27326000	+	0	NA	promoter-TSS (NM_173176)	promoter-TSS (NM_173176)	-52	NM_173176	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
39067	chr11	47977821	47978080	+	0	NA	Intergenic	Intergenic	-2609	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
68004	chr14	75011401	75011750	+	0	NA	3' UTR (NM_014239, exon 8 of 8)	3' UTR (NM_014239, exon 8 of 8)	8654	NM_014239	8892		NM_014239	ENSG00000119718	EIF2B2	EIF-2Bbeta|EIF2B|EIF2Bbeta|VWM2	eukaryotic translation initiation factor 2B subunit beta	protein-coding
149019	chr21	14547771	14548350	+	0	NA	intron (NM_001256370, intron 2 of 8)	intron (NM_001256370, intron 2 of 8)	-1700	NM_001286523	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
200283	chr6	132767971	132768630	+	0	NA	Intergenic	Intergenic	-4845	NM_078488	8875		NM_004665	ENSG00000112303	VNN2	FOAP-4|GPI-80	vanin 2	protein-coding
90305	chr17	1072471	1072630	+	0	NA	intron (NM_001282149, intron 3 of 17).3	CpG	6443	NM_001282149	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
21045	chr1	203127851	203128280	+	0	NA	intron (NM_001048230, intron 1 of 2)	intron (NM_001048230, intron 1 of 2)	339	NM_001048230	134		NM_000674	ENSG00000163485	ADORA1	RDC7	adenosine A1 receptor	protein-coding
2795	chr1	10911451	10911550	+	0	NA	Intergenic	Intergenic	55187	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
176176	chr4	83297501	83297900	+	0	NA	intron (NM_001199830, intron 10 of 10)	intron (NM_001199830, intron 10 of 10)	-12566	NM_015697	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
185564	chr5	131376551	131377230	+	0	NA	intron (NM_001038702, intron 2 of 4)	L1PA15|LINE|L1	112837	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
137781	chr2	199466771	199467130	+	0	NA	intron (NM_015265, intron 1 of 11)	intron (NM_015265, intron 1 of 11)	-1148	NR_026830	150538		NM_153031	ENSG00000225953	SATB2-AS1	-	SATB2 antisense RNA 1	ncRNA
70913	chr14	104096901	104097100	+	0	NA	intron (NM_001080464, intron 4 of 15)	intron (NM_001080464, intron 4 of 15)	11300	NM_001080464	374569		NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT|LYSOLP|hASNase1	asparaginase	protein-coding
69540	chr14	96504451	96505150	+	0	NA	intron (NM_001293628, intron 1 of 21)	intron (NM_001293628, intron 1 of 21)	1935	NM_001293628	10914		NM_032632	ENSG00000090060	PAPOLA	PAP|PAP-alpha	poly(A) polymerase alpha	protein-coding
28316	chr10	46273571	46273880	+	0	NA	Intergenic	Intergenic	-4117	NR_103827	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
226592	chr9	73131951	73133980	+	0	NA	Intergenic	Intergenic	-18900	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
200912	chr6	139138601	139138950	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	3695	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
143729	chr20	32321651	32322450	+	0	NA	intron (NM_004798, intron 5 of 8)	L1MB7|LINE|L1	-36281	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
215431	chr7	157684121	157684380	+	0	NA	intron (NM_130842, intron 11 of 21)	CpG	-109828	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
53606	chr12	68081601	68081800	+	0	NA	Intergenic	Intergenic	78040	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
170555	chr3	186788201	186788480	+	0	NA	TTS (NR_002586)	TTS (NR_002586)	727	NR_002588	619568		NR_002588	ENSG00000263776	SNORA4	ACA4	small nucleolar RNA, H/ACA box 4	snoRNA
98588	chr17	47734311	47735200	+	0	NA	intron (NM_013351, intron 1 of 5)	intron (NM_013351, intron 1 of 5)	1519	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
207611	chr7	44982421	44983230	+	0	NA	TTS (NR_003697)	TTS (NR_003697)	2685	NR_002952	677798		NR_002952	ENSG00000277184	SNORA9	ACA9|SNORA9A	small nucleolar RNA, H/ACA box 9	snoRNA
111956	chr19	4814671	4815000	+	0	NA	Intergenic	Intergenic	16877	NM_001385680	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
22920	chr1	225921651	225922000	+	0	NA	TTS (NR_106799)	TTS (NR_106799)	317	NR_106799	102466270		NR_106799	ENSG00000284519	MIR6741	hsa-mir-6741	microRNA 6741	ncRNA
4961	chr1	24028071	24028480	+	0	NA	Intergenic	Intergenic	-47948	NM_001191005	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
30500	chr10	79311651	79311750	+	0	NA	intron (NM_020338, intron 24 of 24)	intron (NM_020338, intron 24 of 24)	-35769	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
50928	chr12	49342151	49343030	+	0	NA	Intergenic	CpG	-4298	NM_024902	79962		NM_024902	ENSG00000178401	DNAJC22	wus	DnaJ heat shock protein family (Hsp40) member C22	protein-coding
85821	chr16	56991631	56992530	+	0	NA	intron (NR_169520, intron 1 of 47)	MLT1C|LTR|ERVL-MaLR	2523	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
81829	chr16	11570871	11571180	+	0	NA	intron (NR_024320, intron 1 of 3)	MLT1D|LTR|ERVL-MaLR	15348	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
11874	chr1	93094051	93094630	+	0	NA	intron (NM_001164393, intron 1 of 12)	L1ME3B|LINE|L1	15057	NM_007358	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
211100	chr7	102503271	102504200	+	0	NA	intron (NM_001367767, intron 5 of 20)	intron (NM_001367767, intron 5 of 20)	14042	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
78421	chr15	92161771	92161930	+	0	NA	intron (NM_013272, intron 9 of 9)	intron (NM_013272, intron 9 of 9)	-232031	NM_006011	8128		NM_006011	ENSG00000140557	ST8SIA2	HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding
114086	chr19	11107701	11108100	+	0	NA	intron (NM_001195800, intron 4 of 15)	AluSx3|SINE|Alu	-5574	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
111606	chr19	4102251	4103380	+	0	NA	intron (NM_030662, intron 3 of 10)	CpG-13370	21307	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
230017	chr9	127154721	127155180	+	0	NA	intron (NM_001190729, intron 8 of 17)	intron (NM_001190729, intron 8 of 17)	-32315	NM_012098	23452		NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
42681	chr11	72599151	72599450	+	0	NA	intron (NM_001243784, intron 4 of 30)	intron (NM_001243784, intron 4 of 30)	15830	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
100019	chr17	57953371	57953900	+	0	NA	intron (NM_001271875, intron 1 of 10)	Charlie4z|DNA|hAT-Charlie	1777	NM_001271875	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
192492	chr6	24960701	24961850	+	0	NA	intron (NM_001286446, intron 1 of 13)	L2b|LINE|L2	-25315	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
110503	chr19	2052101	2053150	+	0	NA	Intergenic	Intergenic	-1381	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
139411	chr2	222563351	222563450	+	0	NA	TTS (NM_001320834)	TTS (NM_001320834)	92692	NM_005687	10056		NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC|RILDBC1|RJBS	phenylalanyl-tRNA synthetase subunit beta	protein-coding
223133	chr8	143489221	143489480	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	16898	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
74013	chr15	52170401	52170800	+	0	NA	intron (NM_016194, intron 3 of 12)	L1PA11|LINE|L1	9091	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
98312	chr17	46246771	46247130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21583	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
163039	chr3	49860151	49860250	+	0	NA	exon (NM_024046, exon 10 of 11)	exon (NM_024046, exon 10 of 11)	-3636	NM_005879	10293		NM_005879	ENSG00000183763	TRAIP	RNF206|SCKL9|TRIP	TRAF interacting protein	protein-coding
64217	chr14	23063301	23063500	+	0	NA	intron (NM_014977, intron 13 of 18)	intron (NM_014977, intron 13 of 18)	5740	NR_169511	105370705		NR_169511	ENSG00000288795	LOC105370705	-	collagen alpha-2(I) chain-like	ncRNA
85128	chr16	34589151	34589600	+	0	NA	Intergenic	Intergenic	-207895	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
38211	chr11	36398301	36398500	+	0	NA	intron (NM_024841, intron 2 of 9)	intron (NM_024841, intron 2 of 9)	-2597	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
55000	chr12	96360601	96361350	+	0	NA	intron (NM_002595, intron 1 of 16)	LTR50|LTR|ERVL	39464	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
185105	chr5	119270121	119270630	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	1616	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
183846	chr5	87040371	87040730	+	0	NA	Intergenic	L1PA6|LINE|L1	74404	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
155663	chr22	39020101	39021440	+	0	NA	promoter-TSS (NM_001363781)	promoter-TSS (NM_001363781)	-357	NM_001363781	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
95094	chr17	34420301	34420580	+	0	NA	Intergenic	Intergenic	-57207	NM_002981	6346		NM_002981	ENSG00000108702	CCL1	I-309|P500|SCYA1|SISe|TCA3	C-C motif chemokine ligand 1	protein-coding
172559	chr4	2412271	2414500	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	5260	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
193289	chr6	30065851	30067580	+	0	NA	promoter-TSS (NM_021959)	promoter-TSS (NM_021959)	-483	NM_021959	6992		NM_021959	ENSG00000204619	PPP1R11	CFAP255|HCG-V|HCGV|IPP3|TCTE5|TCTEX5	protein phosphatase 1 regulatory inhibitor subunit 11	protein-coding
234813	chrX	24100621	24100880	+	0	NA	Intergenic	L1M4|LINE|L1	45794	NM_001415	1968		NM_001415	ENSG00000130741	EIF2S3	EIF2|EIF2G|EIF2gamma|MEHMO|MRXSBRK|eIF-2gA|eIF2gX	eukaryotic translation initiation factor 2 subunit gamma	protein-coding
73809	chr15	48812671	48813000	+	0	NA	Intergenic	MIRc|SINE|MIR	-1766	NM_014985	22995		NM_014985	ENSG00000103995	CEP152	MCPH4|MCPH9|SCKL5	centrosomal protein 152	protein-coding
167851	chr3	134224371	134225200	+	0	NA	intron (NM_001005861, intron 1 of 14)	LTR13|LTR|ERVK	25959	NM_001005861	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
230384	chr9	128091321	128092100	+	0	NA	5' UTR (NM_001006642, exon 1 of 10)	5' UTR (NM_001006642, exon 1 of 10)	246	NM_001265614	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
122420	chr19	49451201	49452400	+	0	NA	promoter-TSS (NM_017916)	promoter-TSS (NM_017916)	14	NM_017916	55011		NM_017916	ENSG00000104872	PIH1D1	DNAAF14|MOT48|NOP17|Pih1	PIH1 domain containing 1	protein-coding
106926	chr18	26223971	26224130	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	-2395	NR_121653	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
20452	chr1	198544471	198544630	+	0	NA	Intergenic	L2a|LINE|L2	-3605	NM_133326	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
8570	chr1	41365901	41367280	+	0	NA	intron (NM_001291281, intron 1 of 2)	CpG	5156	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
58347	chr12	131588301	131588550	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	59696	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
47526	chr12	4156121	4156500	+	0	NA	Intergenic	Intergenic	-117452	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
43724	chr11	86050801	86051230	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	18069	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
77827	chr15	88634801	88635800	+	0	NA	promoter-TSS (NR_130134)	promoter-TSS (NR_130134)	-332	NR_130134	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
86207	chr16	58020171	58021430	+	0	NA	3' UTR (NM_001195302, exon 6 of 6)	3' UTR (NM_001195302, exon 6 of 6)	-4954	NM_002428	4324		NM_002428	ENSG00000102996	MMP15	MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15	protein-coding
102015	chr17	74789771	74790800	+	0	NA	exon (NM_001321264, exon 5 of 10)	exon (NM_001321264, exon 5 of 10)	13786	NM_017728	54868		NM_017728	ENSG00000109066	TMEM104	SLC38A12	transmembrane protein 104	protein-coding
116842	chr19	18593851	18595450	+	0	NA	intron (NM_004750, intron 6 of 8)	intron (NM_004750, intron 6 of 8)	5852	NM_001100418	55049		NM_017967	ENSG00000006015	REX1BD	C19orf60	required for excision 1-B domain containing	protein-coding
163333	chr3	50388421	50388680	+	0	NA	intron (NM_006030, intron 4 of 37)	intron (NM_006030, intron 4 of 37)	23187	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
59072	chr13	20900901	20901300	+	0	NA	intron (NM_001372061, intron 1 of 19)	MIRb|SINE|MIR	1674	NM_001372061	64328		NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
104884	chr17	81876101	81876430	+	0	NA	Intergenic	AluSg|SINE|Alu	-4928	NM_001301240	396		NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
20234	chr1	193211501	193211700	+	0	NA	intron (NM_024529, intron 11 of 16)	MER44C|DNA|TcMar-Tigger	-24987	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
62820	chr13	109762501	109762700	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	23983	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
146367	chr20	49271571	49271930	+	0	NA	exon (NM_021035, exon 3 of 14)	exon (NM_021035, exon 3 of 14)	6307	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
140188	chr2	231672001	231672250	+	0	NA	Intergenic	Intergenic	-36400	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
213159	chr7	131555621	131556930	+	0	NA	exon (NM_001018111, exon 1 of 9)	exon (NM_001018111, exon 1 of 9)	353	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
100313	chr17	59830271	59830430	+	0	NA	intron (NM_030938, intron 10 of 11)	intron (NM_030938, intron 10 of 11)	-10916	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
166270	chr3	112473021	112473880	+	0	NA	intron (NM_181780, intron 2 of 4)	intron (NM_181780, intron 2 of 4)	26022	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
160802	chr3	32996371	32997530	+	0	NA	3' UTR (NM_001079811, exon 16 of 16)	3' UTR (NM_001079811, exon 16 of 16)	45306	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
134585	chr2	144261951	144262450	+	0	NA	intron (NR_164806, intron 1 of 11)	intron (NR_164806, intron 1 of 11)	-13501	NR_148872	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
167965	chr3	136689521	136690150	+	0	NA	intron (NM_005862, intron 1 of 33)	AluSx|SINE|Alu	62543	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
66110	chr14	59964071	59964450	+	0	NA	intron (NR_075071, intron 10 of 32)	intron (NR_075071, intron 10 of 32)	44547	NM_001355272	341883		NM_198499	ENSG00000131951	LRRC9	-	leucine rich repeat containing 9	protein-coding
72064	chr15	28881771	28882130	+	0	NA	Intergenic	Intergenic	-4024	NM_001353789	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
132306	chr2	105287701	105288200	+	0	NA	intron (NM_001328646, intron 4 of 11)	intron (NM_001328646, intron 4 of 11)	41706	NR_137328	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
37052	chr11	12220521	12220980	+	0	NA	intron (NR_144415, intron 8 of 26)	intron (NR_144415, intron 8 of 26)	57067	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
230230	chr9	127873121	127873380	+	0	NA	intron (NM_001318121, intron 2 of 6)	intron (NM_001318121, intron 2 of 6)	230	NM_001318122	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
6785	chr1	30765351	30765450	+	0	NA	Intergenic	Intergenic	-7626	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
90456	chr17	1377271	1378230	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	22472	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
155764	chr22	39230171	39230330	+	0	NA	intron (NM_033016, intron 4 of 6)	intron (NM_033016, intron 4 of 6)	10659	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
145494	chr20	43946751	43947050	+	0	NA	intron (NM_001098798, intron 1 of 7)	intron (NM_001098798, intron 1 of 7)	1004	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
237115	chrX	104913371	104913530	+	0	NA	intron (NM_017416, intron 2 of 10)	intron (NM_017416, intron 2 of 10)	307244	NM_001291277	56157		NM_031274	ENSG00000268629	TEX13A	-	testis expressed 13A	protein-coding
33746	chr10	122420851	122421350	+	0	NA	intron (NR_165165, intron 9 of 12)	L1MC4|LINE|L1	4135	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
37544	chr11	18696971	18697450	+	0	NA	Intergenic	Intergenic	-1569	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
174702	chr4	42570271	42570650	+	0	NA	intron (NM_006095, intron 14 of 36)	intron (NM_006095, intron 14 of 36)	86645	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
105291	chr17	82492901	82493400	+	0	NA	Intergenic	Intergenic	-26582	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
46900	chr11	134075421	134075980	+	0	NA	intron (NM_032801, intron 1 of 8)	AluJo|SINE|Alu	6628	NM_032801	83700		NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
229026	chr9	114155151	114155950	+	0	NA	promoter-TSS (NM_032888)	promoter-TSS (NM_032888)	13	NM_032888	85301		NM_032161	ENSG00000196739	COL27A1	STLS	collagen type XXVII alpha 1 chain	protein-coding
109188	chr19	380701	381590	+	0	NA	Intergenic	Intergenic	-5119	NM_016585	51298		NM_016585	ENSG00000105549	SPMAP2	CT56|THEG|THEG1	sperm microtubule associated protein 2	protein-coding
50364	chr12	47207221	47209400	+	0	NA	TTS (NR_026544)	TTS (NR_026544)	8133	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
149313	chr21	29017471	29018130	+	0	NA	intron (NM_001320724, intron 1 of 5)	L2a|LINE|L2	1549	NM_016940	10069		NM_016940	ENSG00000156253	RWDD2B	C21orf6|GL011	RWD domain containing 2B	protein-coding
223716	chr8	144458071	144458230	+	0	NA	intron (NM_138496, intron 2 of 4)	MIR|SINE|MIR	4389	NR_162109	113218512		NR_162109		MIR10400	-	microRNA 10400	ncRNA
681	chr1	1383251	1383500	+	0	NA	Intergenic	AluSg4|SINE|Alu	-8168	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
124862	chr2	8239701	8239900	+	0	NA	intron (NR_152741, intron 9 of 9)	intron (NR_152741, intron 9 of 9)	88619	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
19346	chr1	173845471	173845630	+	0	NA	intron (NM_001365212, intron 12 of 15)	AluJb|SINE|Alu	-17698	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
14753	chr1	146006801	146007750	+	0	NA	Intergenic	Intergenic	-10696	NM_006472	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
32651	chr10	103765101	103765400	+	0	NA	intron (NM_014631, intron 3 of 13)	intron (NM_014631, intron 3 of 13)	18471	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
30099	chr10	73958301	73959280	+	0	NA	Intergenic	Intergenic	-36013	NR_160938	414236		NM_001001791	ENSG00000222047	C10orf55	-	chromosome 10 putative open reading frame 55	ncRNA
163528	chr3	51538051	51539100	+	0	NA	promoter-TSS (NM_001322253)	promoter-TSS (NM_001322253)	-144	NM_001322253	23132		NM_015106	ENSG00000164080	RAD54L2	ARIP4|HSPC325|SRISNF2L	RAD54 like 2	protein-coding
57840	chr12	123250801	123251500	+	0	NA	intron (NM_001194995, intron 1 of 2)	L1PBa1|LINE|L1	17104	NM_001270434	8099		NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding
64259	chr14	23230551	23230730	+	0	NA	intron (NM_001370218, intron 2 of 15)	AluY|SINE|Alu	-7296	NM_001282322	100507650		NM_001282322	ENSG00000215277	RNF212B	C14orf164	ring finger protein 212B	protein-coding
78320	chr15	90953851	90953950	+	0	NA	promoter-TSS (NM_001017919)	promoter-TSS (NM_001017919)	-976	NM_001017919	91433		NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
54316	chr12	89521971	89522130	+	0	NA	3' UTR (NM_001199782, exon 3 of 3)	3' UTR (NM_001199782, exon 3 of 3)	2746	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
130933	chr2	87493851	87494150	+	0	NA	intron (NR_146461, intron 2 of 2)	AluY|SINE|Alu	24050	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
97763	chr17	44485571	44485730	+	0	NA	intron (NM_001304940, intron 1 of 9)	intron (NM_001304940, intron 1 of 9)	17756	NM_001002909	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
198730	chr6	108293501	108293830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1389	NR_136553	246269		NM_145315	ENSG00000135537	AFG1L	AFG1|LACE1|c222389	AFG1 like ATPase	protein-coding
1184	chr1	2234161	2235900	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	6711	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
55599	chr12	106766271	106766830	+	0	NA	intron (NR_040246, intron 1 of 3)	intron (NR_040246, intron 1 of 3)	-8132	NM_001351363	55188		NM_018157	ENSG00000111785	RIC8B	RIC8|hSyn	RIC8 guanine nucleotide exchange factor B	protein-coding
168639	chr3	149970601	149972130	+	0	NA	promoter-TSS (NM_002628)	promoter-TSS (NM_002628)	86	NR_036538	646903		NR_036538		LOC646903	-	uncharacterized LOC646903	ncRNA
51591	chr12	52675271	52675530	+	0	NA	exon (NM_006121, exon 9 of 9)	exon (NM_006121, exon 9 of 9)	5007	NM_006121	3848		NM_006121	ENSG00000167768	KRT1	AEI2|CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK	keratin 1	protein-coding
203163	chr6	167056171	167056730	+	0	NA	Intergenic	Intergenic	-55357	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
228205	chr9	97832451	97832550	+	0	NA	intron (NR_147055, intron 1 of 10)	intron (NR_147055, intron 1 of 10)	20580	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
17414	chr1	156647371	156648000	+	0	NA	intron (NM_198427, intron 4 of 7)	intron (NM_198427, intron 4 of 7)	5568	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
21332	chr1	204543021	204543500	+	0	NA	intron (NM_001204171, intron 8 of 9)	AluJo|SINE|Alu	26854	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
28028	chr10	43212151	43212450	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	17439	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
141027	chr2	238183721	238184180	+	0	NA	intron (NM_030768, intron 7 of 11)	intron (NM_030768, intron 7 of 11)	19745	NM_030768	80895		NM_030768	ENSG00000132323	ILKAP	ILKAP2|ILKAP3|PP2C-DELTA|PP2CD|PPM1O	ILK associated serine/threonine phosphatase	protein-coding
182942	chr5	70930101	70930300	+	0	NA	intron (NM_017411, intron 1 of 8).5	MLT1F|LTR|ERVL-MaLR	5113	NM_017411	6607		NM_017411	ENSG00000205571	SMN2	BCD541|C-BCD541|GEMIN1|SMNC|TDRD16B	survival of motor neuron 2, centromeric	protein-coding
119745	chr19	41275121	41275580	+	0	NA	intron (NM_144732, intron 4 of 14)	AluJb|SINE|Alu	10269	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
49745	chr12	31728251	31730000	+	0	NA	promoter-TSS (NR_103523)	promoter-TSS (NR_103523)	49	NM_001278411	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
4448	chr1	21329351	21330450	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	15604	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
192165	chr6	17598101	17598300	+	0	NA	Intergenic	MER39B|LTR|ERV1	-2102	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
9983	chr1	54996181	54997230	+	0	NA	Intergenic	Intergenic	-2228	NM_057176	7809		NM_057176	ENSG00000162399	BSND	BART|DFNB73	barttin CLCNK type accessory subunit beta	protein-coding
34999	chr11	528921	529500	+	0	NA	Intergenic	Intergenic	6357	NM_176795	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
187997	chr5	149534271	149534430	+	0	NA	intron (NM_001892, intron 2 of 9)	AluSc|SINE|Alu	16015	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
176596	chr4	98932651	98932830	+	0	NA	Intergenic	Intergenic	-2103	NM_001968	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
117648	chr19	23799321	23799780	+	0	NA	intron (NR_149351, intron 2 of 4)	intron (NR_149351, intron 2 of 4)	36546	NR_149351	388524		NM_001005472	ENSG00000288920	RPSA2	37LRP|67LR|LBP/p40|LRP/LR|LamR|RPSAP58|RPSA_30_1642	ribosomal protein SA 2	protein-coding
90890	chr17	2396621	2397850	+	0	NA	intron (NM_020310, intron 1 of 5)	intron (NM_020310, intron 1 of 5)	3825	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
27499	chr10	32275701	32276100	+	0	NA	intron (NR_168510, intron 10 of 14)	AluSg4|SINE|Alu	71258	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
226172	chr9	64466351	64466450	+	0	NA	intron (NR_136310, intron 4 of 4).2	intron (NR_136310, intron 4 of 4).2	2801	NR_026759	100133036		NR_026759	ENSG00000290718	FAM95B1	-	family with sequence similarity 95 member B1	ncRNA
145502	chr20	43954171	43954630	+	0	NA	intron (NM_001098798, intron 1 of 7)	L2b|LINE|L2	8504	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
201421	chr6	146857321	146857930	+	0	NA	intron (NR_034115, intron 8 of 10)	intron (NR_034115, intron 8 of 10)	-53801	NR_003954	729176		NR_003954		KATNBL1P6	-	katanin regulatory subunit B1 like 1 pseudogene 6	pseudo
72916	chr15	40369201	40369600	+	0	NA	exon (NM_033510, exon 8 of 8)	exon (NM_033510, exon 8 of 8)	11181	NM_033510	85455		NM_033510	ENSG00000140323	DISP2	C15orf36|DISPB|HsT16908|LINC00594	dispatched RND transporter family member 2	protein-coding
63711	chr14	21196721	21196980	+	0	NA	Intergenic	AluSx1|SINE|Alu	8653	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
91336	chr17	4439921	4440580	+	0	NA	intron (NM_001320449, intron 2 of 10)	intron (NM_001320449, intron 2 of 10)	6310	NM_182538	201305		NM_182538	ENSG00000182557	SPNS3	SLC62A3|SLC63A3	SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)	protein-coding
171339	chr3	196042471	196042830	+	0	NA	Intergenic	L1MB7|LINE|L1	39440	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
161737	chr3	44439471	44440630	+	0	NA	promoter-TSS (NM_001375977)	promoter-TSS (NM_001375977)	-152	NM_001375977								
179944	chr5	774321	775230	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	9954	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
143296	chr20	25295601	25296000	+	0	NA	intron (NM_002862, intron 19 of 19)	intron (NM_002862, intron 19 of 19)	47715	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
51262	chr12	51078221	51078880	+	0	NA	intron (NM_030809, intron 1 of 4)	intron (NM_030809, intron 1 of 4)	5046	NR_045072	81566		NM_030809	ENSG00000110925	CSRNP2	C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12	cysteine and serine rich nuclear protein 2	protein-coding
139177	chr2	219209021	219210150	+	0	NA	TTS (NM_001270999)	TTS (NM_001270999)	2801	NM_001270999	130617		NM_138802	ENSG00000158552	ZFAND2B	AIRAPL	zinc finger AN1-type containing 2B	protein-coding
118474	chr19	35896751	35897350	+	0	NA	exon (NM_001321831, exon 5 of 12)	exon (NM_001321831, exon 5 of 12)	2687	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
209179	chr7	75375251	75375750	+	0	NA	Intergenic	AluSz|SINE|Alu	16300	NR_040583	54441		NM_018991	ENSG00000290951	STAG3L1	STAG3L1P|STAG3L2|STAG3L3	STAG3 cohesin complex component like 1 (pseudogene)	pseudo
90865	chr17	2372801	2373430	+	0	NA	intron (NM_001346700, intron 15 of 22)	intron (NM_001346700, intron 15 of 22)	27945	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
190169	chr5	178150971	178151130	+	0	NA	TTS (NM_022762)	TTS (NM_022762)	2835	NM_017838	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
166372	chr3	113021071	113021230	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1479	NM_001319109	25871		NM_015412	ENSG00000163608	NEPRO	ANXD3|C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
179022	chr4	165110721	165110980	+	0	NA	intron (NM_001100389, intron 1 of 5)	MLT1N2|LTR|ERVL-MaLR	2010	NM_001100389	201931		NM_152681	ENSG00000170088	TMEM192	-	transmembrane protein 192	protein-coding
92453	chr17	8474551	8475280	+	0	NA	3' UTR (NM_001256012, exon 43 of 43)	3' UTR (NM_001256012, exon 43 of 43)	39031	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
46472	chr11	128300551	128301150	+	0	NA	Intergenic	Intergenic	92084	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
224706	chr9	21402451	21403200	+	0	NA	Intergenic	CpG	-6292	NM_002170	3445		NM_002170	ENSG00000120242	IFNA8	IFN-alphaB	interferon alpha 8	protein-coding
154649	chr22	36336771	36336930	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-49943	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
173712	chr4	15773971	15774430	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-4128	NM_001775	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
118102	chr19	34429801	34430080	+	0	NA	intron (NM_005499, intron 1 of 16)	AluJb|SINE|Alu	1559	NM_005499	10054		NM_005499	ENSG00000126261	UBA2	ACCES|ARX|HRIHFB2115|SAE2	ubiquitin like modifier activating enzyme 2	protein-coding
230332	chr9	127982801	127983280	+	0	NA	Intergenic	Intergenic	-2051	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
102154	chr17	75112921	75113330	+	0	NA	intron (NM_024585, intron 2 of 2)	AluSx1|SINE|Alu	3156	NM_001304273	79637		NM_024585	ENSG00000125449	ARMC7	-	armadillo repeat containing 7	protein-coding
3757	chr1	16664671	16665600	+	0	NA	Intergenic	Intergenic	1813	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
121305	chr19	46737251	46737930	+	0	NA	intron (NM_001039877, intron 3 of 17)	intron (NM_001039877, intron 3 of 17)	-8467	NM_024301	79147		NM_024301	ENSG00000181027	FKRP	FKTR|LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
176568	chr4	98643871	98644100	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	14626	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
159981	chr3	18088001	18088200	+	0	NA	intron (NR_161333, intron 4 of 4)	L2a|LINE|L2	125548	NR_161333	339862		NR_046199		BALR6	BALR-6	B-cell acute lymphoblastic leukemia associated long RNA 6	ncRNA
149980	chr21	36704301	36704700	+	0	NA	intron (NM_005069, intron 1 of 10)	CpG	5385	NM_009586	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
50804	chr12	49065121	49065730	+	0	NA	exon (NM_001303126, exon 7 of 8)	exon (NM_001303126, exon 7 of 8)	4554	NM_144593	121268		NM_144593	ENSG00000167550	RHEBL1	RHEBL1c	RHEB like 1	protein-coding
127493	chr2	42257721	42258180	+	0	NA	intron (NM_001145076, intron 3 of 21)	intron (NM_001145076, intron 3 of 21)	-87719	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
48166	chr12	7958271	7959030	+	0	NA	Intergenic	Intergenic	-22463	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
104832	chr17	81821821	81822950	+	0	NA	TTS (NM_001288798)	TTS (NM_001288798)	10906	NM_001288798	348262		NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
18031	chr1	160580521	160581280	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-1384	NM_001184882	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
47082	chr12	614151	614500	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	-3909	NM_001294345	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
171033	chr3	195161921	195162700	+	0	NA	intron (NM_001308069, intron 2 of 3)	intron (NM_001308069, intron 2 of 3)	14439	NR_102711	101410543		NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
24347	chr1	239898121	239898380	+	0	NA	non-coding (NR_046582, exon 2 of 2)	non-coding (NR_046582, exon 2 of 2)	1622	NR_046582	100873984		NR_046582	ENSG00000234601	CHRM3-AS1	-	CHRM3 antisense RNA 1	ncRNA
30127	chr10	74035471	74035730	+	0	NA	intron (NM_014000, intron 1 of 21)	L2c|LINE|L2	37484	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
143268	chr20	25179121	25179600	+	0	NA	Intergenic	Intergenic	-16310	NM_001322394	955		NM_001247	ENSG00000197586	ENTPD6	CD39L2|IL-6SAG|IL6ST2|NTPDase-6|dJ738P15.3	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding
137257	chr2	193331751	193331850	+	0	NA	Intergenic	Intergenic	581955	NR_152587	64002		NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1 prostate-specific transcript	ncRNA
216451	chr8	19514951	19516050	+	0	NA	intron (NM_001354497, intron 1 of 7)	intron (NM_001354497, intron 1 of 7)	87045	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
168701	chr3	150633801	150634200	+	0	NA	Intergenic	AluSx|SINE|Alu	30679	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
193937	chr6	31655071	31655530	+	0	NA	promoter-TSS (NM_019101)	promoter-TSS (NM_019101)	-594	NM_019101	55937		NM_019101	ENSG00000204444	APOM	G3a|HSPC336|NG20|apo-M	apolipoprotein M	protein-coding
226404	chr9	70413201	70414800	+	0	NA	5' UTR (NM_001206, exon 1 of 2)	5' UTR (NM_001206, exon 1 of 2)	657	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
207259	chr7	43904021	43904480	+	0	NA	intron (NM_001077664, intron 1 of 5)	L2c|LINE|L2	2346	NM_001204871	100534592		NM_001204871	ENSG00000270617	URGCP-MRPS24	-	URGCP-MRPS24 readthrough	protein-coding
44403	chr11	103184851	103184950	+	0	NA	exon (NM_001080463, exon 41 of 90)	exon (NM_001080463, exon 41 of 90)	75474	NM_001080463	79659		NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding
238128	chrX	136687551	136688200	+	0	NA	intron (NM_004840, intron 11 of 21)	intron (NM_004840, intron 11 of 21)	39717	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
182024	chr5	55441301	55441500	+	0	NA	intron (NM_176895, intron 4 of 5)	intron (NM_176895, intron 4 of 5)	67526	NR_049869	100847019		NR_049869	ENSG00000265135	MIR5687	-	microRNA 5687	ncRNA
53132	chr12	57841201	57841600	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	5329	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
73369	chr15	42493201	42493400	+	0	NA	Intergenic	AluJb|SINE|Alu	-2006	NM_130798	8773		NM_003825	ENSG00000092531	SNAP23	HsT17016|SNAP-23|SNAP23A|SNAP23B	synaptosome associated protein 23	protein-coding
237054	chrX	103356151	103356980	+	0	NA	promoter-TSS (NM_001006612)	promoter-TSS (NM_001006612)	59	NM_001006614	51186		NM_016303	ENSG00000185222	TCEAL9	WBP5|WEX6	transcription elongation factor A like 9	protein-coding
117960	chr19	33280351	33280650	+	0	NA	Intergenic	(ACACAC)n|Simple_repeat|Simple_repeat	22034	NM_004364	1050		NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	CCAAT enhancer binding protein alpha	protein-coding
100980	chr17	64541851	64542150	+	0	NA	TTS (NM_022739)	TTS (NM_022739)	35023	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
116275	chr19	17717471	17717830	+	0	NA	Intergenic	Intergenic	-1830	NM_018174	55201		NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule associated protein 1S	protein-coding
91907	chr17	7305601	7305800	+	0	NA	Intergenic	AluSz|SINE|Alu	-1299	NM_001143760	1984		NM_001970	ENSG00000132507	EIF5A	EIF-5A|EIF5A1|FABAS|eIF-4D|eIF5AI	eukaryotic translation initiation factor 5A	protein-coding
148324	chr20	63750851	63752430	+	0	NA	intron (NM_025224, intron 4 of 4)	CpG	11864	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
45697	chr11	119070851	119071230	+	0	NA	intron (NR_165448, intron 4 of 13)	AluJb|SINE|Alu	3027	NM_001378221	55823		NM_021729	ENSG00000160695	VPS11	END1|HLD12|HLD12; DYT32|PEP5|RNF108|hVPS11	VPS11 core subunit of CORVET and HOPS complexes	protein-coding
84527	chr16	30521921	30522330	+	0	NA	3' UTR (NM_001114380, exon 29 of 29)	3' UTR (NM_001114380, exon 29 of 29)	4441	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
192504	chr6	25005151	25005450	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	36988	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
31277	chr10	92294521	92294780	+	0	NA	intron (NM_017824, intron 1 of 5)	intron (NM_017824, intron 1 of 5)	3483	NM_017824	54708		NM_017824	ENSG00000198060	MARCHF5	MARCH-V|MARCH5|MITOL|RNF153	membrane associated ring-CH-type finger 5	protein-coding
233803	chrX	1455601	1456150	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2113	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
68246	chr14	76979251	76979850	+	0	NA	Intergenic	AluJr|SINE|Alu	19912	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
141249	chr2	239730251	239730680	+	0	NA	Intergenic	MIR3|SINE|MIR	-32395	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
5955	chr1	26896501	26897400	+	0	NA	intron (NM_022078, intron 2 of 6)	AluY|SINE|Alu	3517	NM_022078	63906		NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
226096	chr9	62833251	62833350	+	0	NA	TTS (NR_135128)	TTS (NR_135128)	5046	NR_135128	100132249		NR_135128		LOC100132249	-	uncharacterized LOC100132249	ncRNA
204202	chr7	2505101	2505900	+	0	NA	Intergenic	Intergenic	-7029	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
109640	chr19	998001	998580	+	0	NA	Intergenic	L1MB3|LINE|L1	-2129	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
95172	chr17	35164801	35165500	+	0	NA	intron (NM_173167, intron 8 of 18)	AluJo|SINE|Alu	16886	NM_173167	146862		NM_173167	ENSG00000141161	UNC45B	CMYA4|CTRCT43|MFM11|SMUNC45|UNC-45B|UNC45	unc-45 myosin chaperone B	protein-coding
157942	chr22	49793971	49794650	+	0	NA	intron (NR_146335, intron 7 of 13)	intron (NR_146335, intron 7 of 13)	30021	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
160087	chr3	18790401	18791050	+	0	NA	Intergenic	L2c|LINE|L2	-345133	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
209146	chr7	75153921	75154180	+	0	NA	Intergenic	MIRb|SINE|MIR	17948	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
74242	chr15	56886701	56888000	+	0	NA	non-coding (NR_015419, exon 4 of 4)	non-coding (NR_015419, exon 4 of 4)	-30740	NM_001322151	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
134654	chr2	144448771	144449730	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-70364	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
205058	chr7	6600351	6600750	+	0	NA	intron (NM_001303039, intron 5 of 6)	intron (NM_001303039, intron 5 of 6)	10529	NM_001303039	79034		NM_024067	ENSG00000146576	INTS15	C7orf26	integrator complex subunit 15	protein-coding
59194	chr13	22114501	22115280	+	0	NA	Intergenic	Intergenic	-95395	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
211559	chr7	105570251	105570550	+	0	NA	intron (NM_001355531, intron 1 of 3)	intron (NM_001355531, intron 1 of 3)	11093	NM_001355530	100130771		NM_001355526	ENSG00000185055	EFCAB10	-	EF-hand calcium binding domain 10	protein-coding
197704	chr6	85674371	85675890	+	0	NA	Intergenic	Intergenic	2238	NR_002743	26799		NR_002743		SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
220114	chr8	94592051	94592700	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-38857	NM_183009	25962		NM_015496	ENSG00000164944	VIRMA	KIAA1429|MSTP054|fSAP121	vir like m6A methyltransferase associated	protein-coding
31757	chr10	97858151	97858250	+	0	NA	intron (NM_001010917, intron 1 of 4)	L2c|LINE|L2	8357	NM_001010917	401647		NM_001010917	ENSG00000155265	GOLGA7B	C10orf132|C10orf133|bA451M19.3|bA459F3.4	golgin A7 family member B	protein-coding
73167	chr15	41481221	41481480	+	0	NA	3' UTR (NM_015138, exon 18 of 18)	3' UTR (NM_015138, exon 18 of 18)	-12524	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
115627	chr19	16092251	16092750	+	0	NA	intron (NM_001367837, intron 5 of 7)	intron (NM_001367837, intron 5 of 7)	15484	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
136845	chr2	185433971	185434130	+	0	NA	Intergenic	L1PA16|LINE|L1	-266978	NR_136319	105373782		NR_136319		LOC105373782	-	uncharacterized LOC105373782	ncRNA
134904	chr2	149561201	149561680	+	0	NA	Intergenic	Intergenic	-25918	NR_110240	101929231		NR_110240	ENSG00000231969	MMADHC-DT	-	MMADHC divergent transcript	ncRNA
162206	chr3	47013501	47013700	+	0	NA	TTS (NR_024046)	TTS (NR_024046)	2058	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
203310	chr6	170145751	170146730	+	0	NA	Intergenic	Intergenic	-14402	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
121667	chr19	47498801	47499380	+	0	NA	intron (NR_038457, intron 1 of 8)	intron (NR_038457, intron 1 of 8)	14808	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
140996	chr2	238100051	238100480	+	0	NA	promoter-TSS (NM_194312)	promoter-TSS (NM_194312)	-75	NM_194312	339768		NM_194312	ENSG00000144488	ESPNL	-	espin like	protein-coding
237440	chrX	119680521	119681250	+	0	NA	intron (NM_145799, intron 1 of 10)	AluSg4|SINE|Alu	12283	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
136370	chr2	176101971	176102130	+	0	NA	3' UTR (NM_021193, exon 2 of 2)	3' UTR (NM_021193, exon 2 of 2)	2255	NM_021193	3238		NM_021193	ENSG00000170178	HOXD12	HOX4H	homeobox D12	protein-coding
123856	chr19	55250401	55250630	+	0	NA	intron (NM_014931, intron 1 of 23)	intron (NM_014931, intron 1 of 23)	-5265	NR_106861	102466739		NR_106861	ENSG00000278264	MIR6803	hsa-mir-6803	microRNA 6803	ncRNA
173441	chr4	8237651	8238380	+	0	NA	intron (NM_001318480, intron 17 of 17)	L2b|LINE|L2	-31739	NM_053044	94031		NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
140640	chr2	233473421	233473680	+	0	NA	Intergenic	Intergenic	16348	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
29087	chr10	68016651	68017180	+	0	NA	intron (NM_001278185, intron 8 of 23)	intron (NM_001278185, intron 8 of 23)	-6032	NR_131184	100009667		NR_131184		POU5F1P5	Oct4-pg5	POU class 5 homeobox 1 pseudogene 5	pseudo
25176	chr10	5446401	5446830	+	0	NA	promoter-TSS (NM_005863)	promoter-TSS (NM_005863)	6	NM_005863	10276		NM_005863	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
30329	chr10	76984871	76985030	+	0	NA	intron (NM_001322838, intron 19 of 29)	intron (NM_001322838, intron 19 of 29)	96906	NR_120655	101929328		NR_120655	ENSG00000236467	KCNMA1-AS1	-	KCNMA1 antisense RNA 1	ncRNA
55825	chr12	108855851	108857000	+	0	NA	intron (NM_001161330, intron 1 of 13)	intron (NM_001161330, intron 1 of 13)	1158	NM_018984	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
24149	chr1	235854001	235854950	+	0	NA	intron (NM_001301365, intron 1 of 52)	L2|LINE|L2	-1415	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
96780	chr17	41788221	41788830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1757	NM_001352776	3728		NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PG|PKGB	junction plakoglobin	protein-coding
87239	chr16	69725101	69725500	+	0	NA	intron (NM_000903, intron 1 of 5)	L3|LINE|CR1	1260	NM_000903	1728		NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	NAD(P)H quinone dehydrogenase 1	protein-coding
134753	chr2	145259071	145259580	+	0	NA	Intergenic	Intergenic	591358	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
198398	chr6	105791751	105791850	+	0	NA	Intergenic	Intergenic	-294536	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
190010	chr5	177477721	177478350	+	0	NA	Intergenic	Intergenic	-4401	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
66350	chr14	61452021	61453430	+	0	NA	intron (NM_006255, intron 6 of 13)	intron (NM_006255, intron 6 of 13)	117469	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
197953	chr6	89950521	89951380	+	0	NA	exon (NM_001170794, exon 5 of 7)	exon (NM_001170794, exon 5 of 7)	56481	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
133233	chr2	113201721	113201980	+	0	NA	3' UTR (NM_012455, exon 17 of 17)	3' UTR (NM_012455, exon 17 of 17)	27879	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
114582	chr19	12930201	12930750	+	0	NA	promoter-TSS (NR_149078)	promoter-TSS (NR_149078)	-47	NR_149078	106144598		NR_149078	ENSG00000266975	FARSA-AS1	-	FARSA antisense RNA 1	ncRNA
78090	chr15	90240521	90240780	+	0	NA	intron (NM_001013657, intron 3 of 3)	AluSx|SINE|Alu	6441	NM_001322811	390637		NM_001013657	ENSG00000183208	GDPGP1	C15orf58|VTC2	GDP-D-glucose phosphorylase 1	protein-coding
227385	chr9	89509351	89509850	+	0	NA	Intergenic	HAL1|LINE|L1	-11487	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
106544	chr18	21599501	21602280	+	0	NA	promoter-TSS (NM_052911)	promoter-TSS (NM_052911)	-186	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
46734	chr11	128930221	128930800	+	0	NA	Intergenic	Intergenic	7324	NM_001195194	63970		NM_022112	ENSG00000120471	TP53AIP1	P53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein-coding
87988	chr16	80670051	80670440	+	0	NA	intron (NM_152342, intron 2 of 6)	THE1C|LTR|ERVL-MaLR	-97437	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
112917	chr19	7650351	7651050	+	0	NA	Intergenic	Intergenic	13590	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
152997	chr22	23177571	23177730	+	0	NA	Intergenic	Intergenic	-2859	NM_004327	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
13910	chr1	119968001	119968380	+	0	NA	exon (NM_024408, exon 7 of 34)	exon (NM_024408, exon 7 of 34)	-71675	NM_021794	11085		NM_021794	ENSG00000134249	ADAM30	svph4	ADAM metallopeptidase domain 30	protein-coding
225695	chr9	36555721	36556730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-16637	NR_046337	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
128769	chr2	62212271	62212700	+	0	NA	intron (NM_006577, intron 1 of 1)	intron (NM_006577, intron 1 of 1)	-3036	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
189470	chr5	173063001	173064150	+	0	NA	intron (NM_001168393, intron 1 of 3)	AluSx|SINE|Alu	7223	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
194161	chr6	32087201	32088200	+	0	NA	intron (NM_019105, intron 6 of 43).4	CpG	21638	NM_019105	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
178809	chr4	153518301	153519600	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	52590	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
43043	chr11	74074421	74074500	+	0	NA	exon (NM_001286577, exon 24 of 33)	exon (NM_001286577, exon 24 of 33)	-65223	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
197603	chr6	81595921	81596000	+	0	NA	Intergenic	LTR16C|LTR|ERVL	156721	NM_017633	55603		NM_017633	ENSG00000112773	TENT5A	C6orf37|FAM46A|OI18|XTP11	terminal nucleotidyltransferase 5A	protein-coding
109996	chr19	1421151	1421250	+	0	NA	exon (NM_001352034, exon 5 of 12)	exon (NM_001352034, exon 5 of 12)	13614	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
78065	chr15	90144471	90144630	+	0	NA	Intergenic	AluSx3|SINE|Alu	-40370	NM_020210	10509		NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
217112	chr8	24955821	24956800	+	0	NA	exon (NM_006158, exon 1 of 4)	exon (NM_006158, exon 1 of 4)	302	NM_006158	4747		NM_006158	ENSG00000277586	NEFL	CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110	neurofilament light chain	protein-coding
150641	chr21	43402001	43402500	+	0	NA	Intergenic	Intergenic	24881	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
28398	chr10	47605921	47606400	+	0	NA	Intergenic	Intergenic	-22741	NR_033407	1517		NR_033407		CTSLP2	CTSL1P2|CTSL1P5|CTSL1P7|CTSLL2|CTSLL5|CTSLL7|CTSLP5|CTSLP7|bA144G6.6|bA342C24.4	cathepsin L pseudogene 2	pseudo
167185	chr3	128149801	128150200	+	0	NA	intron (NM_001319086, intron 1 of 9)	intron (NM_001319086, intron 1 of 9)	-3481	NM_021937	60678		NM_021937	ENSG00000132394	EEFSEC	EFSEC|SELB	eukaryotic elongation factor, selenocysteine-tRNA specific	protein-coding
128835	chr2	63557951	63558050	+	0	NA	intron (NR_148705, intron 1 of 16)	L1PA10|LINE|L1	30477	NM_015910	51057		NM_015910	ENSG00000143951	WDPCP	BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ	WD repeat containing planar cell polarity effector	protein-coding
156473	chr22	41260471	41260630	+	0	NA	intron (NM_001278651, intron 7 of 16)	intron (NM_001278651, intron 7 of 16)	-7500	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
141276	chr2	240030851	240031550	+	0	NA	promoter-TSS (NM_001005853)	promoter-TSS (NM_001005853)	-771	NM_001005853	389090		NM_001001962	ENSG00000182083	OR6B2	OR2-1|OR6B2P	olfactory receptor family 6 subfamily B member 2	protein-coding
198366	chr6	105454951	105455050	+	0	NA	Intergenic	MER34A|LTR|ERV1	-51918	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
61033	chr13	48194351	48194450	+	0	NA	Intergenic	AluSx|SINE|Alu	-38806	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
56	chr1	268821	269330	+	0	NA	Intergenic	Intergenic	-62478	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
71237	chr14	105180621	105181780	+	0	NA	exon (NM_001318380, exon 1 of 5)	exon (NM_001318380, exon 1 of 5)	112	NM_177533	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
170684	chr3	187750271	187750430	+	0	NA	Intergenic	Intergenic	-4882	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
16202	chr1	153859501	153859900	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	63272	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
62005	chr13	81116801	81117200	+	0	NA	Intergenic	Intergenic	98609	NR_125770	103724386		NR_125770		LINC00377	TCONS_00021861	long intergenic non-protein coding RNA 377	ncRNA
214048	chr7	143373201	143373550	+	0	NA	intron (NM_001371250, intron 1 of 6)	L2a|LINE|L2	7650	NR_161353	100507507		NR_161353		FAM131B-AS2	-	FAM131B antisense RNA 2	ncRNA
103280	chr17	77782121	77782450	+	0	NA	Intergenic	Intergenic	-53726	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
218426	chr8	47703871	47704430	+	0	NA	intron (NM_001352944, intron 11 of 13)	intron (NM_001352944, intron 11 of 13)	34014	NM_005195	1052		NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT enhancer binding protein delta	protein-coding
145935	chr20	46027101	46027600	+	0	NA	intron (NM_001134771, intron 1 of 25)	intron (NM_001134771, intron 1 of 25)	-1865	NM_020708	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
28156	chr10	43571071	43571630	+	0	NA	intron (NM_001324353, intron 2 of 4)	intron (NM_001324353, intron 2 of 4)	-2891	NM_005674	8187		NM_005674	ENSG00000196793	ZNF239	HOK-2|MOK2	zinc finger protein 239	protein-coding
153484	chr22	26367401	26367900	+	0	NA	intron (NM_001184775, intron 13 of 15)	Kanga1b|DNA|TcMar-Tc2	-61610	NM_020437	57168		NM_020437	ENSG00000128203	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
109968	chr19	1392471	1392830	+	0	NA	intron (NM_001363602, intron 6 of 7)	L1MB7|LINE|L1	8743	NM_001363602	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
10986	chr1	84479121	84480380	+	0	NA	intron (NM_025065, intron 1 of 8)	intron (NM_025065, intron 1 of 8)	484	NM_025065	80135		NM_025065	ENSG00000117133	RPF1	BXDC5	ribosome production factor 1 homolog	protein-coding
81693	chr16	11228671	11229400	+	0	NA	Intergenic	L2a|LINE|L2	27147	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
172100	chr4	1055551	1056480	+	0	NA	TTS (NM_001366918)	TTS (NM_001366918)	43551	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
127215	chr2	38594801	38595580	+	0	NA	intron (NM_138394, intron 1 of 12)	AluSx3|SINE|Alu	7738	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
226068	chr9	61865601	61865800	+	0	NA	Intergenic	Intergenic	-3085	NR_144466	105379807		NR_144466		LOC105379807	-	uncharacterized LOC105379807	ncRNA
65746	chr14	53180451	53181130	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	27436	NR_110062	101927620		NR_110062	ENSG00000258731	DDHD1-DT	-	DDHD1 divergent transcript	ncRNA
170783	chr3	188954601	188954880	+	0	NA	Intergenic	Intergenic	-7101	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
64779	chr14	34716071	34716630	+	0	NA	Intergenic	Intergenic	-1527	NR_028130	1073		NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding
42799	chr11	72792001	72792200	+	0	NA	intron (NM_006645, intron 1 of 6)	AluSx1|SINE|Alu	1605	NM_006645	10809		NM_006645	ENSG00000214530	STARD10	CGI-52|NY-CO-28|PCTP2|SDCCAG28	StAR related lipid transfer domain containing 10	protein-coding
229522	chr9	122810171	122810700	+	0	NA	Intergenic	Intergenic	10312	NM_080859	392392		NM_080859	ENSG00000165204	OR1K1	hg99	olfactory receptor family 1 subfamily K member 1	protein-coding
99468	chr17	50157921	50158600	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-7583	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
14273	chr1	143505121	143505400	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	-80576	NR_027356	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
99100	chr17	49086671	49087030	+	0	NA	Intergenic	Intergenic	-45610	NM_001159388	124872		NM_153446	ENSG00000167080	B4GALNT2	B4GALT|GALGT2	beta-1,4-N-acetyl-galactosaminyltransferase 2 (SID blood group)	protein-coding
7753	chr1	36164221	36164480	+	0	NA	intron (NM_001286365, intron 1 of 15)	L2a|LINE|L2	8190	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
221533	chr8	124688711	124689230	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	39503	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
98152	chr17	46028751	46029330	+	0	NA	TTS (NM_001203251)	TTS (NM_001203251)	29790	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
154676	chr22	36363871	36364200	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	23932	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
103334	chr17	77994951	77995450	+	0	NA	Intergenic	LTR41|LTR|ERVL	-9037	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
158158	chr22	50196951	50197480	+	0	NA	intron (NM_001378762, intron 5 of 9)	intron (NM_001378762, intron 5 of 9)	-3796	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
56374	chr12	113159851	113160480	+	0	NA	promoter-TSS (NR_106956)	promoter-TSS (NR_106956)	-988	NR_106956	102466222		NR_106956	ENSG00000276908	MIR7106	hsa-mir-7106	microRNA 7106	ncRNA
164883	chr3	71085951	71086250	+	0	NA	intron (NM_001244810, intron 7 of 20)	MIRb|SINE|MIR	-21176	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
190237	chr5	178461171	178461350	+	0	NA	intron (NM_173465, intron 2 of 28)	intron (NM_173465, intron 2 of 28)	129133	NM_173465	91522		NM_173465	ENSG00000050767	COL23A1	-	collagen type XXIII alpha 1 chain	protein-coding
14086	chr1	120858201	120859030	+	0	NA	Intergenic	Intergenic	-7630	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
160314	chr3	27496521	27496780	+	0	NA	Intergenic	Intergenic	-12266	NM_001321103	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
213500	chr7	139059001	139059550	+	0	NA	intron (NM_020119, intron 9 of 12)	intron (NM_020119, intron 9 of 12)	-15118	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
120130	chr19	42203771	42204880	+	0	NA	intron (NR_073049, intron 3 of 4)	MSTB|LTR|ERVL-MaLR	13352	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
140968	chr2	237941651	237942650	+	0	NA	Intergenic	MER89|LTR|ERV1	-24795	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
103001	chr17	76772271	76773700	+	0	NA	intron (NR_148239, intron 10 of 12)	L1MEc|LINE|L1	-26059	NR_110837	101928514		NR_110837	ENSG00000267065	LINC02080	-	long intergenic non-protein coding RNA 2080	ncRNA
206529	chr7	35024371	35024530	+	0	NA	intron (NM_015283, intron 1 of 21)	intron (NM_015283, intron 1 of 21)	13035	NM_001366673	23333		NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like C-mannosyltransferase 1	protein-coding
136527	chr2	177259671	177259900	+	0	NA	intron (NM_001313902, intron 1 of 3)	AluYm1|SINE|Alu	-3775	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
157024	chr22	42552871	42553030	+	0	NA	Intergenic	X7A_LINE|LINE|CR1	-1006	NR_104301	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
220636	chr8	100947421	100948900	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	2411	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
30621	chr10	80247651	80247750	+	0	NA	promoter-TSS (NR_136612)	promoter-TSS (NR_136612)	-58	NR_136612	100130698		NR_136612		LOC100130698	-	uncharacterized LOC100130698	ncRNA
191939	chr6	15879901	15880500	+	0	NA	Intergenic	Intergenic	-217142	NM_001271669	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
59002	chr13	20126121	20126580	+	0	NA	Intergenic	AluSx1|SINE|Alu	23649	NR_126380	104355137		NR_126380	ENSG00000236076	LINC01072	-	long intergenic non-protein coding RNA 1072	ncRNA
102715	chr17	76181101	76181530	+	0	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	-40070	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
18945	chr1	168521461	168522050	+	0	NA	Intergenic	Intergenic	22242	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
187690	chr5	143345251	143345350	+	0	NA	intron (NR_157096, intron 1 of 7)	AluSz|SINE|Alu	57983	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
199344	chr6	114726051	114726280	+	0	NA	Intergenic	L1PA2|LINE|L1	-663288	NM_153612	222537		NM_153612	ENSG00000249853	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate-glucosamine 3-sulfotransferase 5	protein-coding
168382	chr3	141930751	141931480	+	0	NA	Intergenic	Intergenic	54472	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
86277	chr16	58514021	58514280	+	0	NA	TTS (NM_020465)	TTS (NM_020465)	-1329	NM_024860	79918		NM_024860	ENSG00000103037	SETD6	-	SET domain containing 6, protein lysine methyltransferase	protein-coding
37685	chr11	27508001	27508200	+	0	NA	intron (NR_002832, intron 1 of 7)	AluJr4|SINE|Alu	1248	NR_002832	497258		NR_002832	ENSG00000245573	BDNF-AS	ANTI-BDNF|BDNF|BDNF-AS1|BDNFAS|BDNFOS|NCRNA00049	BDNF antisense RNA	ncRNA
163865	chr3	52494601	52496000	+	0	NA	promoter-TSS (NM_015136)	promoter-TSS (NM_015136)	-38	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
8577	chr1	41373251	41373550	+	0	NA	intron (NM_001291281, intron 1 of 2)	L2c|LINE|L2	2269	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
208505	chr7	69597751	69598650	+	0	NA	promoter-TSS (NR_108105)	promoter-TSS (NR_108105)	-275	NM_015570	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
152979	chr22	23135921	23136380	+	0	NA	intron (NM_014433, intron 3 of 6)	L2c|LINE|L2	5840	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
185380	chr5	127852951	127853050	+	0	NA	intron (NM_001317938, intron 5 of 6)	AluY|SINE|Alu	149609	NM_001317938	728586		NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
58050	chr12	124471151	124471450	+	0	NA	intron (NM_001077261, intron 6 of 47)	L2c|LINE|L2	96312	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
9789	chr1	53574851	53575550	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	115801	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
60496	chr13	41314651	41315030	+	0	NA	intron (NM_024561, intron 1 of 19)	AluJr4|SINE|Alu	-2802	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
73879	chr15	50357951	50358350	+	0	NA	non-coding (NR_024490, exon 1 of 1)	non-coding (NR_024490, exon 1 of 1)	-2179	NR_039862	100616396		NR_039862	ENSG00000284284	MIR4712	-	microRNA 4712	ncRNA
29439	chr10	70381671	70383130	+	0	NA	promoter-TSS (NM_207119)	promoter-TSS (NM_207119)	225	NM_001278212	55222		NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
161312	chr3	39405371	39405530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1270	NM_002295	3921		NM_002295	ENSG00000168028	RPSA	37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40|uS2	ribosomal protein SA	protein-coding
10262	chr1	64499971	64500130	+	0	NA	intron (NM_020925, intron 1 of 26)	intron (NM_020925, intron 1 of 26)	-5864	NM_001293274	57685		NM_020925	ENSG00000158966	CACHD1	-	cache domain containing 1	protein-coding
144695	chr20	36460451	36462270	+	0	NA	promoter-TSS (NM_001042486)	promoter-TSS (NM_001042486)	-108	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
175258	chr4	66522651	66522750	+	0	NA	Intergenic	Intergenic	245876	NR_031673	100302177		NR_031673	ENSG00000221563	MIR1269A	MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a	microRNA 1269a	ncRNA
101803	chr17	73309771	73310030	+	0	NA	intron (NM_012121, intron 1 of 1)	intron (NM_012121, intron 1 of 1)	2101	NM_012121	23580		NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein 4	protein-coding
232418	chr9	136088601	136089270	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	6354	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
223016	chr8	143289201	143289850	+	0	NA	Intergenic	CpG	-1892	NM_030895	79943		NM_030895	ENSG00000185730	ZNF696	-	zinc finger protein 696	protein-coding
143247	chr20	25053071	25053230	+	0	NA	intron (NM_001252675, intron 1 of 13)	AluJb|SINE|Alu	4989	NM_032501	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
13635	chr1	116437271	116437630	+	0	NA	intron (NR_125972, intron 2 of 3)	L1MDa|LINE|L1	-18828	NR_027646	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
238804	chrX	154395471	154396600	+	0	NA	Intergenic	AluSz|SINE|Alu	-2030	NM_001303625	6134		NM_006013	ENSG00000147403	RPL10	AUTSX5|DXS648|DXS648E|L10|MRXS35|NOV|QM|uL16	ribosomal protein L10	protein-coding
229726	chr9	124868221	124869600	+	0	NA	5' UTR (NM_030978, exon 3 of 6)	5' UTR (NM_030978, exon 3 of 6)	6780	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
79154	chr16	274901	276400	+	0	NA	intron (NM_183337, intron 1 of 16)	CpG-8819	294	NM_183337	8786		NM_003834	ENSG00000076344	RGS11	RS11	regulator of G protein signaling 11	protein-coding
65542	chr14	51925571	51925930	+	0	NA	intron (NM_053064, intron 2 of 3)	AluSz|SINE|Alu	-7179	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
46970	chr11	134837751	134837860	+	0	NA	Intergenic	Intergenic	101860	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
151295	chr21	45532851	45533730	+	0	NA	intron (NM_194255, intron 2 of 5)	intron (NM_194255, intron 2 of 5)	1466	NM_001205207	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
163601	chr3	51985151	51985700	+	0	NA	exon (NM_001198898, exon 3 of 14)	exon (NM_001198898, exon 3 of 14)	1890	NM_000666	95		NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
171682	chr3	197746821	197747280	+	0	NA	intron (NM_001145642, intron 1 of 20)	intron (NM_001145642, intron 1 of 20)	-2503	NM_001011537	84248		NM_032288	ENSG00000122068	FYTTD1	UIF	forty-two-three domain containing 1	protein-coding
111215	chr19	3491501	3491700	+	0	NA	exon (NM_001145165, exon 5 of 5)	exon (NM_001145165, exon 5 of 5)	9074	NM_031304	83475		NM_031304	ENSG00000129932	DOHH	HLRC1|NEDMVIC|hDOHH	deoxyhypusine hydroxylase	protein-coding
174002	chr4	26342521	26342780	+	0	NA	promoter-TSS (NM_001374403)	promoter-TSS (NM_001374403)	-490	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
143323	chr20	25470001	25470200	+	0	NA	intron (NM_001318226, intron 16 of 22)	intron (NM_001318226, intron 16 of 22)	62417	NR_134574	9837		NM_021067	ENSG00000101003	GINS1	IMD55|PSF1	GINS complex subunit 1	protein-coding
41199	chr11	65647101	65648330	+	0	NA	intron (NM_153253, intron 9 of 15)	CpG-4479	-1477	NR_039709	100616284		NR_039709	ENSG00000265874	MIR4489	mir-4489	microRNA 4489	ncRNA
45191	chr11	117426151	117426650	+	0	NA	Intergenic	Intergenic	98546	NM_014956	22897		NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
10591	chr1	67419651	67420030	+	0	NA	intron (NM_001018067, intron 6 of 7)	intron (NM_001018067, intron 6 of 7)	10562	NM_001018067	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
176547	chr4	98330721	98330800	+	0	NA	intron (NM_001100426, intron 2 of 14)	SVA_B|Retroposon|SVA	69376	NM_001100428	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
5084	chr1	24697171	24697750	+	0	NA	Intergenic	LTR12|LTR|ERV1	-47987	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
105818	chr18	2964271	2964930	+	0	NA	intron (NM_001375808, intron 1 of 19)	MLT1A|LTR|ERVL-MaLR	-17977	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
187946	chr5	149264451	149264980	+	0	NA	Intergenic	Intergenic	-7123	NM_001323063	134265		NM_152406	ENSG00000157510	AFAP1L1	-	actin filament associated protein 1 like 1	protein-coding
155064	chr22	37537821	37538100	+	0	NA	Intergenic	AluJr|SINE|Alu	-18545	NM_014550	29775		NM_014550	ENSG00000100065	CARD10	BIMP1|CARMA3|IMD89	caspase recruitment domain family member 10	protein-coding
185234	chr5	123035621	123036130	+	0	NA	intron (NM_000943, intron 1 of 4)	CpG	850	NM_000943	5480		NM_000943	ENSG00000168938	PPIC	CYPC	peptidylprolyl isomerase C	protein-coding
232685	chr9	136525251	136525750	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	-5874	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
115452	chr19	15337221	15337880	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5011	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
206390	chr7	30743721	30744250	+	0	NA	Intergenic	L2a|LINE|L2	-8150	NM_006774	11185		NM_006774	ENSG00000241644	INMT	TEMT	indolethylamine N-methyltransferase	protein-coding
45898	chr11	120328701	120328930	+	0	NA	intron (NM_174926, intron 2 of 3)	intron (NM_174926, intron 2 of 3)	3516	NM_001198675	219902		NM_174926	ENSG00000181264	TLCD5	TMEM136	TLC domain containing 5	protein-coding
217533	chr8	29261001	29261400	+	0	NA	intron (NM_015254, intron 1 of 39)	intron (NM_015254, intron 1 of 39)	1870	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
163951	chr3	52892611	52894200	+	0	NA	intron (NM_001198974, intron 1 of 9)	L1MC5a|LINE|L1	4143	NM_198563	375346		NM_198563	ENSG00000213533	STIMATE	TMEM110	STIM activating enhancer	protein-coding
118285	chr19	35295451	35296450	+	0	NA	exon (NM_002361, exon 4 of 11)	exon (NM_002361, exon 4 of 11)	3789	NM_002361	4099		NM_002361	ENSG00000105695	MAG	GMA|S-MAG|SIGLEC-4A|SIGLEC4|SIGLEC4A|SPG75	myelin associated glycoprotein	protein-coding
178612	chr4	152090601	152090950	+	0	NA	Intergenic	Intergenic	-9978	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
65054	chr14	39269421	39269680	+	0	NA	intron (NM_203355, intron 1 of 22)	AluJb|SINE|Alu	2165	NM_001354144	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
143029	chr20	21104351	21104450	+	0	NA	intron (NR_147212, intron 1 of 2)	intron (NR_147212, intron 1 of 2)	1958	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
76012	chr15	71540451	71540630	+	0	NA	intron (NM_024817, intron 6 of 16)	AluSg|SINE|Alu	-6696	NM_001286429	79875		NM_024817	ENSG00000187720	THSD4	AAT12|ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin type 1 domain containing 4	protein-coding
184672	chr5	108093201	108093400	+	0	NA	intron (NM_001163315, intron 6 of 8)	intron (NM_001163315, intron 6 of 8)	288798	NM_001163315	64839		NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
137081	chr2	190917951	190918500	+	0	NA	intron (NM_014905, intron 7 of 17)	Tigger1|DNA|TcMar-Tigger	37404	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
230560	chr9	128453971	128454550	+	0	NA	promoter-TSS (NM_153436)	promoter-TSS (NM_153436)	-895	NM_153436	4957		NM_002540	ENSG00000136811	ODF2	CT134|ODF2/1|ODF2/2|ODF84	outer dense fiber of sperm tails 2	protein-coding
125171	chr2	10050721	10050980	+	0	NA	intron (NM_001177718, intron 3 of 3)	intron (NM_001177718, intron 3 of 3)	6605	NM_001177718	8462		NM_003597	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	KLF transcription factor 11	protein-coding
90423	chr17	1347151	1347330	+	0	NA	intron (NR_024058, intron 6 of 6)	AluY|SINE|Alu	52982	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
208164	chr7	64663921	64664380	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1933	NM_001282360	51427		NM_016220	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
119469	chr19	40436651	40436950	+	0	NA	Intergenic	AluYf1|SINE|Alu	5798	NM_013368	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
90375	chr17	1261621	1262130	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-8569	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
149719	chr21	34092421	34092900	+	0	NA	intron (NM_032476, intron 1 of 2)	intron (NM_032476, intron 1 of 2)	19082	NM_006933	6526		NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
25415	chr10	6560621	6561300	+	0	NA	intron (NM_001323265, intron 1 of 17)	AluY|SINE|Alu	19316	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
68074	chr14	75268271	75268430	+	0	NA	Intergenic	AluSz|SINE|Alu	-10478	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
26580	chr10	21993271	21993730	+	0	NA	intron (NM_022365, intron 1 of 11)	intron (NM_022365, intron 1 of 11)	10230	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
131163	chr2	91528471	91528630	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	131399	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
169040	chr3	153042871	153043400	+	0	NA	Intergenic	Intergenic	-119091	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
117667	chr19	24037601	24037800	+	0	NA	intron (NM_001278677, intron 1 of 5)	AluSp|SINE|Alu	4251	NM_001278663	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
84170	chr16	29809171	29810380	+	0	NA	intron (NM_001042539, intron 5 of 5)	intron (NM_001042539, intron 5 of 5)	-2418	NM_001256442	112476		NM_145239	ENSG00000167371	PRRT2	BFIC2|BFIS2|DSPB3|DYT10|EKD1|FICCA|ICCA|IFITMD1|PKC	proline rich transmembrane protein 2	protein-coding
230689	chr9	128728771	128729530	+	0	NA	TTS (NM_001375959)	TTS (NM_001375959)	4688	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
100687	chr17	63822601	63823130	+	0	NA	intron (NM_017647, intron 13 of 20)	MIR|SINE|MIR	-4566	NM_002805	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
176825	chr4	102558001	102558650	+	0	NA	intron (NM_001382625, intron 6 of 24)	L1PA12|LINE|L1	-55839	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
227559	chr9	92133701	92134930	+	0	NA	intron (NR_015444, intron 2 of 12)	intron (NR_015444, intron 2 of 12)	1481	NR_015444	100128076		NR_015444		LOC100128076	-	protein tyrosine phosphatase receptor type H pseudogene	pseudo
191751	chr6	13815801	13816000	+	0	NA	Intergenic	L1ME2|LINE|L1	-1340	NM_001031713	63933		NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
32157	chr10	101367171	101367330	+	0	NA	intron (NM_003939, intron 1 of 13)	AluSc|SINE|Alu	13085	NM_003939	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
202181	chr6	156013271	156013430	+	0	NA	Intergenic	Intergenic	66553	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
113473	chr19	9937821	9938330	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1560	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
38539	chr11	45905521	45906730	+	0	NA	TTS (NM_001080446)	TTS (NM_001080446)	1146	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
228182	chr9	97574651	97575680	+	0	NA	intron (NM_001166116, intron 8 of 9)	LTR12C|LTR|ERV1	58203	NM_139246	158427		NM_139246	ENSG00000136925	TSTD2	C9orf97	thiosulfate sulfurtransferase like domain containing 2	protein-coding
47553	chr12	4291171	4291330	+	0	NA	intron (NM_001759, intron 4 of 4)	intron (NM_001759, intron 4 of 4)	-15066	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
55070	chr12	96500821	96501700	+	0	NA	intron (NM_001367885, intron 2 of 68)	intron (NM_001367885, intron 2 of 68)	11683	NM_001367885	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
211385	chr7	105014901	105016200	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	1345	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
163739	chr3	52339551	52340000	+	0	NA	intron (NM_015512, intron 8 of 77)	L1MC4|LINE|L1	23456	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
8875	chr1	43554471	43554700	+	0	NA	intron (NM_001329139, intron 5 of 32)	intron (NM_001329139, intron 5 of 32)	23702	NM_002840	5792		NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase receptor type F	protein-coding
100719	chr17	63880401	63880800	+	0	NA	exon (NM_022557, exon 4 of 4)	exon (NM_022557, exon 4 of 4)	1344	NM_022558	2689		NM_002059	ENSG00000136487	GH2	GH-V|GHB2|GHL|GHV|hGH-V	growth hormone 2	protein-coding
82245	chr16	15065971	15066330	+	0	NA	intron (NM_018427, intron 15 of 17)	intron (NM_018427, intron 15 of 17)	-10071	NM_001270766	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
230717	chr9	128808221	128808900	+	0	NA	3' UTR (NM_001286772, exon 10 of 10)	3' UTR (NM_001286772, exon 10 of 10)	-9940	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
147489	chr20	59154801	59155000	+	0	NA	intron (NM_001384354, intron 2 of 7)	L2c|LINE|L2	-8921	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
164259	chr3	57544221	57544480	+	0	NA	promoter-TSS (NM_198564)	promoter-TSS (NM_198564)	-6	NM_198564	201625		NM_178504	ENSG00000174844	DNAH12	DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19	dynein axonemal heavy chain 12	protein-coding
137200	chr2	191165151	191165530	+	0	NA	Intergenic	Intergenic	-13744	NM_001243835	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
173337	chr4	7719521	7719930	+	0	NA	intron (NM_020777, intron 18 of 26)	intron (NM_020777, intron 18 of 26)	-34365	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
98911	chr17	48599851	48600580	+	0	NA	intron (NM_001369397, intron 1 of 2)	intron (NM_001369397, intron 1 of 2)	4257	NR_033205	404266		NR_033201	ENSG00000233101	HOXB-AS3	-	HOXB cluster antisense RNA 3	ncRNA
133421	chr2	118882571	118883250	+	0	NA	Intergenic	LTR41|LTR|ERVL	-35262	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
114786	chr19	13773051	13773480	+	0	NA	non-coding (NR_138051, exon 7 of 7)	non-coding (NR_138051, exon 7 of 7)	-1191	NM_014047	28974		NM_014047	ENSG00000104979	C19orf53	HSPC023|L10K|LYDG10	chromosome 19 open reading frame 53	protein-coding
11804	chr1	92785121	92786030	+	0	NA	promoter-TSS (NM_001350198)	promoter-TSS (NM_001350198)	-467	NM_001377211	7813		NM_005665	ENSG00000067208	EVI5	EVI-5|NB4S	ecotropic viral integration site 5	protein-coding
41027	chr11	65442371	65442530	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	-2008	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
218315	chr8	42708721	42709300	+	0	NA	intron (NM_000749, intron 2 of 5)	intron (NM_000749, intron 2 of 5)	11634	NM_001347717	1142		NM_000749	ENSG00000147432	CHRNB3	-	cholinergic receptor nicotinic beta 3 subunit	protein-coding
83459	chr16	27348821	27349080	+	0	NA	intron (NM_001257997, intron 5 of 9)	intron (NM_001257997, intron 5 of 9)	34976	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
149687	chr21	33935471	33935630	+	0	NA	intron (NR_038883, intron 1 of 2)	AluSx1|SINE|Alu	4336	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
116484	chr19	18109571	18110880	+	0	NA	intron (NM_015016, intron 2 of 26)	CpG	-11409	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
221112	chr8	118099321	118100730	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	11801	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
57515	chr12	122121421	122121680	+	0	NA	intron (NM_014938, intron 1 of 16)	AluSg|SINE|Alu	42794	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
30570	chr10	79905471	79905630	+	0	NA	intron (NR_033857, intron 1 of 5)	intron (NR_033857, intron 1 of 5)	652	NR_033857	100288974		NR_033857		BMS1P21	-	BMS1 pseudogene 21	pseudo
104442	chr17	81086771	81087830	+	0	NA	intron (NM_001385147, intron 5 of 12)	intron (NM_001385147, intron 5 of 12)	3761	NM_001385156	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
150975	chr21	44330001	44331050	+	0	NA	exon (NM_001271441, exon 6 of 7)	exon (NM_001271441, exon 6 of 7)	7813	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
38768	chr11	47166301	47166700	+	0	NA	intron (NM_032389, intron 14 of 15)	intron (NM_032389, intron 14 of 15)	10379	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
193630	chr6	30787951	30788350	+	0	NA	intron (NR_138037, intron 1 of 3)	intron (NR_138037, intron 1 of 3)	21325	NR_138037	105375013		NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20	ncRNA
224935	chr9	33024531	33026400	+	0	NA	promoter-TSS (NM_001368999)	promoter-TSS (NM_001368999)	192	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
85393	chr16	50297401	50297800	+	0	NA	intron (NM_001114, intron 7 of 25)	intron (NM_001114, intron 7 of 25)	4984	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
53676	chr12	68447301	68447950	+	0	NA	intron (NR_120458, intron 1 of 3)	intron (NR_120458, intron 1 of 3)	3859	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
56864	chr12	120267001	120267200	+	0	NA	Intergenic	AluSx|SINE|Alu	-1329	NM_001243756	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
114264	chr19	11567621	11567900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8524	NM_032377	84337		NM_032377	ENSG00000130165	ELOF1	ELF1	elongation factor 1	protein-coding
173831	chr4	20251721	20252000	+	0	NA	promoter-TSS (NM_001289135)	promoter-TSS (NM_001289135)	-45	NM_004787	9353		NM_004787	ENSG00000145147	SLIT2	SLIL3|Slit-2	slit guidance ligand 2	protein-coding
140947	chr2	237746421	237746880	+	0	NA	intron (NM_001137550, intron 11 of 23)	intron (NM_001137550, intron 11 of 23)	-52129	NM_001080504	375316		NM_198852	ENSG00000177483	RBM44	-	RNA binding motif protein 44	protein-coding
117305	chr19	19497251	19498430	+	0	NA	intron (NM_001384516, intron 8 of 12)	intron (NM_001384516, intron 8 of 12)	17708	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
224502	chr9	19046701	19047300	+	0	NA	intron (NM_001287049, intron 1 of 3)	AluSx1|SINE|Alu	2354	NM_001287049	158297		NM_153707	ENSG00000155875	SAXO1	C9orf138|FAM154A	stabilizer of axonemal microtubules 1	protein-coding
142691	chr20	8018901	8022400	+	0	NA	promoter-TSS (NM_021156)	promoter-TSS (NM_021156)	-889	NM_021156	56255		NM_021156	ENSG00000125827	TMX4	DJ971N18.2|PDIA14|TXNDC13	thioredoxin related transmembrane protein 4	protein-coding
173516	chr4	9692851	9693150	+	0	NA	Intergenic	Intergenic	-88634	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
231280	chr9	130022971	130024200	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	19604	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
8827	chr1	42962201	42962880	+	0	NA	intron (NR_033967, intron 1 of 3)	intron (NR_033967, intron 1 of 3)	3491	NR_033967	440584		NR_033967	ENSG00000227533	SLC2A1-DT	SLC2A1-AS1	SLC2A1 divergent transcript	ncRNA
155408	chr22	38392321	38392850	+	0	NA	intron (NR_002821, intron 1 of 4)	intron (NR_002821, intron 1 of 4)	6330	NM_001289912	102800317		NM_001289912	ENSG00000283900	TPTEP2-CSNK1E	LOC400927-CSNK1E	TPTEP2-CSNK1E readthrough	protein-coding
158483	chr22	50785851	50786300	+	0	NA	intron (NR_026982, intron 2 of 2)	intron (NR_026982, intron 2 of 2)	2346	NR_026982	284942		NM_203302	ENSG00000291064	RPL23AP82	RPL23A_43_1761	ribosomal protein L23a pseudogene 82	pseudo
139042	chr2	218583151	218583260	+	0	NA	intron (NR_073390, intron 3 of 6)	(GT)n|Simple_repeat|Simple_repeat	14366	NR_073390	9125		NM_005444	ENSG00000144580	CNOT9	CAF40|CT129|RCD-1|RCD1|RQCD1	CCR4-NOT transcription complex subunit 9	protein-coding
93030	chr17	17269921	17270330	+	0	NA	intron (NM_001316354, intron 4 of 11)	AluSx3|SINE|Alu	10573	NM_001199125	8533		NM_003653	ENSG00000141030	COPS3	CSN3|SGN3	COP9 signalosome subunit 3	protein-coding
187979	chr5	149489871	149490350	+	0	NA	Intergenic	Intergenic	59464	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
17889	chr1	160084951	160085050	+	0	NA	intron (NM_004983, intron 2 of 2)	intron (NM_004983, intron 2 of 2)	3462	NM_004983	3765		NM_004983	ENSG00000162728	KCNJ9	GIRK3|KIR3.3	potassium inwardly rectifying channel subfamily J member 9	protein-coding
89299	chr16	88710821	88711880	+	0	NA	intron (NM_001318507, intron 4 of 14)	intron (NM_001318507, intron 4 of 14)	4847	NM_001012762	348180		NM_001012759	ENSG00000174177	CTU2	C16orf84|MFRG|NCS2|UPF0432	cytosolic thiouridylase subunit 2	protein-coding
206738	chr7	36644601	36644800	+	0	NA	intron (NM_001177506, intron 4 of 21)	intron (NM_001177506, intron 4 of 21)	-44580	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
95636	chr17	37770951	37771130	+	0	NA	Intergenic	Intergenic	-25981	NM_000458	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
189335	chr5	172171901	172172100	+	0	NA	intron (NM_005990, intron 1 of 18)	AluSq2|SINE|Alu	16224	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
178998	chr4	163548551	163549300	+	0	NA	intron (NM_001166373, intron 6 of 7)	intron (NM_001166373, intron 6 of 7)	54235	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
212116	chr7	116217071	116217930	+	0	NA	intron (NM_015641, intron 1 of 6)	intron (NM_015641, intron 1 of 6)	-5453	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
112610	chr19	6741971	6742130	+	0	NA	intron (NR_110231, intron 3 of 14)	MER46C|DNA|TcMar-Tigger	2370	NM_001288963	9322		NM_004240	ENSG00000125733	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
152690	chr22	21625271	21625630	+	0	NA	Intergenic	L2c|LINE|L2	4572	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
151413	chr21	46057301	46058100	+	0	NA	Intergenic	Intergenic	-40412	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
43084	chr11	74752021	74752500	+	0	NA	intron (NM_001098638, intron 1 of 5)	AluSc|SINE|Alu	3411	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
226047	chr9	43532651	43532750	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	406534	NR_160669	102724904		NR_160669	ENSG00000291167	LOC102724904	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
111493	chr19	3967551	3967650	+	0	NA	intron (NM_001348, intron 2 of 8)	AluSx1|SINE|Alu	3499	NM_001348	1613		NM_001348	ENSG00000167657	DAPK3	DLK|ZIP|ZIPK	death associated protein kinase 3	protein-coding
16523	chr1	154936121	154938280	+	0	NA	promoter-TSS (NM_001323011)	promoter-TSS (NM_001323011)	-481	NM_001323011	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
146216	chr20	48790751	48791500	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	36874	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
160251	chr3	24185901	24186100	+	0	NA	intron (NR_121667, intron 3 of 3)	intron (NR_121667, intron 3 of 3)	34676	NR_121667	101927854		NR_121667		THRB-AS2	-	THRB antisense RNA 2	ncRNA
139199	chr2	219252051	219253300	+	0	NA	promoter-TSS (NM_001355221)	promoter-TSS (NM_001355221)	-568	NM_001355221	80086		NM_001355221	ENSG00000243910	TUBA4B	TUBA4	tubulin alpha 4b	protein-coding
209197	chr7	75420171	75420330	+	0	NA	intron (NM_001099415, intron 13 of 14)	L2a|LINE|L2	9928	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
104711	chr17	81549551	81550450	+	0	NA	intron (NR_033338, intron 3 of 8)	intron (NR_033338, intron 3 of 8)	2353	NR_033338	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
238210	chrX	139205051	139205150	+	0	NA	promoter-TSS (NM_001139500)	promoter-TSS (NM_001139500)	-77	NM_001139498	2258		NM_004114	ENSG00000129682	FGF13	DEE90|FGF-13|FGF2|FHF-2|FHF2|LINC00889|XLID110	fibroblast growth factor 13	protein-coding
177353	chr4	110193571	110194780	+	0	NA	intron (NM_024090, intron 1 of 3)	intron (NM_024090, intron 1 of 3)	4440	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
234681	chrX	20266311	20268100	+	0	NA	promoter-TSS (NM_004586)	promoter-TSS (NM_004586)	-296	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
169454	chr3	167740971	167741330	+	0	NA	intron (NM_005025, intron 1 of 8)	intron (NM_005025, intron 1 of 8)	5427	NM_005025	5274		NM_005025	ENSG00000163536	SERPINI1	HNS-S1|HNS-S2|PI12|neuroserpin	serpin family I member 1	protein-coding
32359	chr10	102388401	102388600	+	0	NA	Intergenic	AluSx|SINE|Alu	-5610	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
33839	chr10	124221001	124221950	+	0	NA	Intergenic	MIR|SINE|MIR	-127877	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
109947	chr19	1362751	1363050	+	0	NA	intron (NR_168277, intron 7 of 14)	intron (NR_168277, intron 7 of 14)	5481	NR_163149	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
231001	chr9	129502221	129502680	+	0	NA	non-coding (NR_038955, exon 3 of 5)	non-coding (NR_038955, exon 3 of 5)	13790	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
57134	chr12	121222851	121223990	+	0	NA	intron (NR_046373, intron 4 of 10)	intron (NR_046373, intron 4 of 10)	13291	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
152946	chr22	22865471	22866230	+	0	NA	Intergenic	Intergenic	-20417	NR_049835	100847006		NR_049835	ENSG00000264824	MIR5571	-	microRNA 5571	ncRNA
231334	chr9	130171571	130173030	+	0	NA	promoter-TSS (NM_014286)	promoter-TSS (NM_014286)	-104	NM_014286	23413		NM_014286	ENSG00000107130	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
36693	chr11	8691521	8691830	+	0	NA	Intergenic	Intergenic	6236	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
195245	chr6	36360401	36360950	+	0	NA	intron (NM_001207039, intron 6 of 6)	intron (NM_001207039, intron 6 of 6)	-23787	NM_001010903	389384		NM_001010903	ENSG00000189325	BNIP5	C6orf222	BCL2 interacting protein 5	protein-coding
60285	chr13	40625701	40626000	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	40791	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
75559	chr15	67032821	67033300	+	0	NA	intron (NR_135686, intron 2 of 5)	L2a|LINE|L2	31122	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
126244	chr2	27074471	27074630	+	0	NA	Intergenic	AluSz|SINE|Alu	-2896	NM_001134693	100128731		NM_001134693	ENSG00000228474	OST4	-	oligosaccharyltransferase complex subunit 4, non-catalytic	protein-coding
71551	chr14	106277551	106278080	+	0	NA	Intergenic	Intergenic	-9859	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
108333	chr18	63971671	63971930	+	0	NA	intron (NM_001366198, intron 1 of 6)	intron (NM_001366198, intron 1 of 6)	1719	NM_001348368	5271		NM_002640	ENSG00000166401	SERPINB8	C18orf53|CAP2|PI-8|PI8|PSS5	serpin family B member 8	protein-coding
214067	chr7	143394351	143394650	+	0	NA	intron (NM_005232, intron 14 of 17)	AluSx3|SINE|Alu	11814	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
25632	chr10	8096001	8096200	+	0	NA	Intergenic	Intergenic	41412	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
222759	chr8	141469121	141469200	+	0	NA	intron (NM_207414, intron 17 of 29)	(GGT)n|Simple_repeat|Simple_repeat	38069	NR_160399	389690		NM_207414	ENSG00000226807	MROH5	-	maestro heat like repeat family member 5 (gene/pseudogene)	protein-coding
167202	chr3	128321551	128322300	+	0	NA	intron (NM_021937, intron 4 of 6)	intron (NM_021937, intron 4 of 6)	-141669	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
121960	chr19	48477021	48477280	+	0	NA	intron (NM_017457, intron 8 of 11)	intron (NM_017457, intron 8 of 11)	7781	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
136435	chr2	176637521	176638900	+	0	NA	promoter-TSS (NR_040001)	promoter-TSS (NR_040001)	456	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
141138	chr2	239211571	239211930	+	0	NA	intron (NM_006037, intron 3 of 26)	intron (NM_006037, intron 3 of 26)	-16293	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
67221	chr14	68947921	68948180	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	31252	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
115920	chr19	16615801	16616230	+	0	NA	intron (NM_004831, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	12189	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
237830	chrX	130059371	130059530	+	0	NA	Intergenic	Intergenic	51047	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
123669	chr19	54906951	54907400	+	0	NA	intron (NM_004829, intron 3 of 6).6	AluSq2|SINE|Alu	1027	NM_001242356	9437		NM_004829	ENSG00000189430	NCR1	CD335|LY94|NK-p46|NKP46	natural cytotoxicity triggering receptor 1	protein-coding
210863	chr7	101128301	101128900	+	0	NA	exon (NM_000602, exon 2 of 9)	exon (NM_000602, exon 2 of 9)	1496	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
108039	chr18	59141171	59141400	+	0	NA	intron (NM_033280, intron 1 of 5)	intron (NM_033280, intron 1 of 5)	1401	NM_033280	90701		NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
238037	chrX	135295571	135296500	+	0	NA	promoter-TSS (NM_001185063)	promoter-TSS (NM_001185063)	4	NM_001185063	7626		NM_007131	ENSG00000186376	ZNF75D	D8C6|ZKSCAN24|ZNF75|ZNF82|ZSCAN28	zinc finger protein 75D	protein-coding
207883	chr7	50393801	50394750	+	0	NA	intron (NM_006060, intron 7 of 7)	intron (NM_006060, intron 7 of 7)	56075	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
7959	chr1	37682271	37682830	+	0	NA	3' UTR (NM_001350766, exon 6 of 6)	3' UTR (NM_001350766, exon 6 of 6)	7979	NM_001350761	54955		NM_017850	ENSG00000116922	AIRIM	C1orf109	AFG2 interacting ribosome maturation factor	protein-coding
131310	chr2	96118871	96119450	+	0	NA	Intergenic	Intergenic	-2589	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
129774	chr2	71100501	71100700	+	0	NA	Intergenic	Intergenic	29629	NM_032601	84693		NM_032601	ENSG00000124370	MCEE	GLOD2|MCE|MMCE	methylmalonyl-CoA epimerase	protein-coding
70530	chr14	102498851	102499250	+	0	NA	3' UTR (NM_014844, exon 20 of 20)	3' UTR (NM_014844, exon 20 of 20)	10726	NM_152326	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
213557	chr7	139113971	139114130	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-4330	NM_020119	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
74811	chr15	63472001	63472400	+	0	NA	Intergenic	AluY|SINE|Alu	-32311	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
73661	chr15	44719201	44720380	+	0	NA	Intergenic	MER57B2|LTR|ERV1	1946	NR_162102	113218500		NR_162102		MIR10393	-	microRNA 10393	ncRNA
138380	chr2	204019671	204019830	+	0	NA	Intergenic	Tigger12|DNA|TcMar-Tigger	82987	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
153275	chr22	24152801	24154530	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-27822	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
123580	chr19	54458751	54459250	+	0	NA	3' UTR (NM_001375641, exon 15 of 15).2	3' UTR (NM_001375641, exon 15 of 15).2	4778	NM_198988	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
137814	chr2	200375071	200375230	+	0	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	66200	NM_001282744	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
220755	chr8	102317151	102317530	+	0	NA	intron (NM_001282873, intron 14 of 58)	L1PA3|LINE|L1	77889	NR_125415	101927221		NR_125415		UBR5-DT	UBR5-AS1	UBR5 divergent transcript	ncRNA
172157	chr4	1214351	1214930	+	0	NA	intron (NM_001377193, intron 6 of 9)	intron (NM_001377193, intron 6 of 9)	4520	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
41397	chr11	66011251	66011350	+	0	NA	promoter-TSS (NM_001323)	promoter-TSS (NM_001323)	-708	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
212733	chr7	129866001	129866400	+	0	NA	intron (NM_003344, intron 3 of 6)	intron (NM_003344, intron 3 of 6)	86760	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
74118	chr15	55168401	55169030	+	0	NA	Intergenic	AluJb|SINE|Alu	28226	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
55463	chr12	104672701	104672900	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	81167	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
85023	chr16	31699321	31699580	+	0	NA	Intergenic	Intergenic	-1163	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
13412	chr1	113977901	113978100	+	0	NA	TTS (NM_001369807)	TTS (NM_001369807)	-1391	NM_001286353	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
54788	chr12	94243071	94243430	+	0	NA	intron (NM_005761, intron 11 of 30)	intron (NM_005761, intron 11 of 30)	-19369	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
78579	chr15	93030651	93031550	+	0	NA	Intergenic	Intergenic	42056	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
88006	chr16	80948901	80949150	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	48651	NM_001351973	56942		NM_020188	ENSG00000103121	CMC2	2310061C15Rik|C16orf61|DC13	C-X9-C motif containing 2	protein-coding
86757	chr16	67656551	67657380	+	0	NA	TTS (NM_022914)	TTS (NM_022914)	3295	NM_001082486	65057		NM_022914	ENSG00000102977	ACD	PIP1|PTOP|TINT1|TPP1	ACD shelterin complex subunit and telomerase recruitment factor	protein-coding
128445	chr2	55600871	55601430	+	0	NA	intron (NM_020463, intron 3 of 14)	AluSg|SINE|Alu	16472	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
35268	chr11	898151	898250	+	0	NA	intron (NM_001142674, intron 8 of 13)	intron (NM_001142674, intron 8 of 13)	12610	NM_001142676	66005		NM_023947	ENSG00000177830	CHID1	GL008|SI-CLP|SICLP	chitinase domain containing 1	protein-coding
121648	chr19	47482051	47482600	+	0	NA	intron (NR_111923, intron 4 of 12)	AluSx|SINE|Alu	1894	NR_111923	11133		NM_007059	ENSG00000118162	KPTN	2E4|KICS4|MRT41	kaptin, actin binding protein	protein-coding
19508	chr1	175194771	175195480	+	0	NA	Intergenic	Intergenic	-2138	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
27563	chr10	32352171	32352950	+	0	NA	intron (NR_104163, intron 1 of 1)	L2c|LINE|L2	5196	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
107515	chr18	47997571	47997730	+	0	NA	Intergenic	Intergenic	-66504	NM_001135937	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
129673	chr2	70293001	70294600	+	0	NA	promoter-TSS (NM_003096)	promoter-TSS (NM_003096)	-29	NM_001317171	6637		NM_003096	ENSG00000143977	SNRPG	SMG|Sm-G	small nuclear ribonucleoprotein polypeptide G	protein-coding
222931	chr8	143014401	143015050	+	0	NA	intron (NR_026913, intron 1 of 1)	intron (NR_026913, intron 1 of 1)	3665	NR_026913	100133669		NR_026913		LY6E-DT	-	LY6E divergent transcript	ncRNA
208932	chr7	74090901	74091100	+	0	NA	intron (NM_002314, intron 2 of 15)	AluY|SINE|Alu	-2217	NM_001204426	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
176792	chr4	102514071	102515230	+	0	NA	intron (NM_001382625, intron 2 of 24)	L1MEf|LINE|L1	-12164	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
96805	chr17	41917851	41918400	+	0	NA	intron (NM_001303274, intron 1 of 28)	CpG	826	NM_001096	47		NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
209222	chr7	75527421	75529180	+	0	NA	promoter-TSS (NR_028059)	promoter-TSS (NR_028059)	-177	NR_028059	5387		NM_005395	ENSG00000291092	PMS2P3	PMS2L3|PMS2L9|PMS5|PMSR3	PMS1 homolog 2, mismatch repair system component pseudogene 3	pseudo
96491	chr17	40289601	40290000	+	0	NA	intron (NM_001254, intron 2 of 11)	AluSx1|SINE|Alu	1921	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
1297	chr1	2340701	2341100	+	0	NA	intron (NM_024848, intron 10 of 13)	intron (NM_024848, intron 10 of 13)	11761	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
145706	chr20	45028371	45029380	+	0	NA	intron (NM_006282, intron 10 of 10)	intron (NM_006282, intron 10 of 10)	62363	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
54123	chr12	76499901	76500100	+	0	NA	intron (NM_001003712, intron 1 of 22)	intron (NM_001003712, intron 1 of 22)	59771	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
177059	chr4	108032801	108033000	+	0	NA	intron (NM_001184705, intron 7 of 8)	AluSz|SINE|Alu	28236	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
138234	chr2	202849021	202849480	+	0	NA	intron (NM_001288622, intron 1 of 12)	L1PA8|LINE|L1	-20016	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
204185	chr7	2474821	2475280	+	0	NA	TTS (NM_001291784)	TTS (NM_001291784)	1333	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
139924	chr2	230772621	230773680	+	0	NA	intron (NM_016289, intron 2 of 8)	L1ME1|LINE|L1	59602	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
201233	chr6	143634651	143634750	+	0	NA	intron (NM_014721, intron 1 of 12)	intron (NM_014721, intron 1 of 12)	26520	NM_001100166	9749		NM_014721	ENSG00000112419	PHACTR2	C6orf56	phosphatase and actin regulator 2	protein-coding
178966	chr4	159446501	159446800	+	0	NA	Intergenic	Intergenic	178841	NM_014247	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
226229	chr9	66198471	66198630	+	0	NA	Intergenic	Intergenic	-33644	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
212634	chr7	129432801	129433000	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-1532	NM_001134336	57464		NM_020704	ENSG00000128578	STRIP2	FAM40B|FAR11B	striatin interacting protein 2	protein-coding
51986	chr12	53957401	53957700	+	0	NA	3' UTR (NM_173860, exon 2 of 2)	3' UTR (NM_173860, exon 2 of 2)	2647	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
8525	chr1	40999071	40999500	+	0	NA	intron (NR_125440, intron 9 of 17)	intron (NR_125440, intron 9 of 17)	10766	NM_001301237	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
126658	chr2	29003271	29003830	+	0	NA	exon (NM_001321539, exon 6 of 16)	exon (NM_001321539, exon 6 of 16)	22252	NM_001321538	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
146883	chr20	51505901	51506500	+	0	NA	intron (NM_173091, intron 3 of 9)	MIRc|SINE|MIR	36519	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
35808	chr11	2210951	2211050	+	0	NA	Intergenic	Intergenic	37937	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
61987	chr13	80337771	80338130	+	0	NA	intron (NM_005842, intron 1 of 1)	intron (NM_005842, intron 1 of 1)	1709	NM_001318537	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
229995	chr9	126873521	126874080	+	0	NA	intron (NM_001099270, intron 1 of 1)	AluSx1|SINE|Alu	13161	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
47314	chr12	1706571	1707130	+	0	NA	intron (NM_001375365, intron 1 of 7).2	FRAM|SINE|Alu	15780	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
83953	chr16	29145971	29146130	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	71208	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
205190	chr7	7675751	7676650	+	0	NA	5' UTR (NM_001302350, exon 3 of 5)	5' UTR (NM_001302350, exon 3 of 5)	35448	NM_001302348	729852		NM_001302348	ENSG00000219545	UMAD1	RPA3-AS1|RPA3OS	UBAP1-MVB12-associated (UMA) domain containing 1	protein-coding
96265	chr17	39855871	39856900	+	0	NA	intron (NM_183231, intron 1 of 5)	AluSx|SINE|Alu	7803	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
117817	chr19	29962951	29963050	+	0	NA	intron (NR_045557, intron 1 of 9)	L1MEg|LINE|L1	20761	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
157897	chr22	49756451	49756550	+	0	NA	Intergenic	Intergenic	67831	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
216772	chr8	22495701	22496080	+	0	NA	intron (NM_005605, intron 3 of 13)	intron (NM_005605, intron 3 of 13)	54812	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
203961	chr7	1561201	1561400	+	0	NA	Intergenic	Intergenic	-5095	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
105696	chr18	2677551	2678130	+	0	NA	intron (NM_015295, intron 5 of 47)	AluJo|SINE|Alu	22114	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
74941	chr15	63765371	63766030	+	0	NA	intron (NM_003922, intron 2 of 77)	MER4B|LTR|ERV1	68248	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
126908	chr2	32553271	32553430	+	0	NA	intron (NM_016252, intron 65 of 73)	intron (NM_016252, intron 65 of 73)	21197	NR_030285	693143		NR_030285	ENSG00000207653	MIR558	MIRN558|hsa-mir-558	microRNA 558	ncRNA
218301	chr8	42507601	42507800	+	0	NA	intron (NM_006749, intron 1 of 10)	intron (NM_006749, intron 1 of 10)	-6469	NM_001257180	6575		NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC2|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
130131	chr2	74715151	74715950	+	0	NA	Intergenic	CpG	61303	NM_004263	10505		NM_004263	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	ssemaphorin 4F	protein-coding
233554	chrX	270251	271030	+	0	NA	Intergenic	Intergenic	-5716	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228354	chr9	99049301	99049500	+	0	NA	intron (NM_001855, intron 28 of 41)	MIRc|SINE|MIR	-55713	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
35101	chr11	639051	640380	+	0	NA	exon (NM_000797, exon 3 of 4)	exon (NM_000797, exon 3 of 4)	2446	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
12680	chr1	109461301	109461680	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-5056	NM_001040709	284612		NM_198280	ENSG00000143028	SYPL2	MG29	synaptophysin like 2	protein-coding
31109	chr10	89316471	89316700	+	0	NA	Intergenic	L1PA5|LINE|L1	-11412	NM_001549	3437		NM_001549	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41	interferon induced protein with tetratricopeptide repeats 3	protein-coding
71976	chr15	25710101	25710380	+	0	NA	intron (NM_024490, intron 10 of 20)	intron (NM_024490, intron 10 of 20)	138585	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
69833	chr14	99231901	99232350	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	40072	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
192853	chr6	27175871	27176350	+	0	NA	Intergenic	Intergenic	28484	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
110366	chr19	1903301	1903980	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1759	NM_138422	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
143874	chr20	32560971	32561680	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	24008	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
13515	chr1	114753271	114753730	+	0	NA	intron (NM_001242891, intron 1 of 20)	intron (NM_001242891, intron 1 of 20)	4484	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
107386	chr18	46070921	46071250	+	0	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	1175	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
96290	chr17	39931051	39931750	+	0	NA	Intergenic	AluSx3|SINE|Alu	-3799	NM_001320802	94103		NM_016471	ENSG00000172057	ORMDL3	-	ORMDL sphingolipid biosynthesis regulator 3	protein-coding
218034	chr8	38785621	38785950	+	0	NA	intron (NM_001352797, intron 2 of 13)	intron (NM_001352797, intron 2 of 13)	-1451	NM_001352779	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
17676	chr1	157721771	157722130	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	-21181	NM_052939	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
94029	chr17	27245221	27245550	+	0	NA	Intergenic	Intergenic	48611	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
49446	chr12	24902121	24903000	+	0	NA	promoter-TSS (NM_001178094)	promoter-TSS (NM_001178094)	-338	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
39424	chr11	60872601	60873000	+	0	NA	intron (NM_207341, intron 6 of 11)	MIRb|SINE|MIR	5258	NM_207341	22917		NM_207341	ENSG00000149506	ZP1	HEL163|OOMD|OOMD1|OZEMA1|ZPB1	zona pellucida glycoprotein 1	protein-coding
203855	chr7	1455651	1456130	+	0	NA	intron (NM_182924, intron 1 of 16)	intron (NM_182924, intron 1 of 16)	3580	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
186180	chr5	134207221	134207650	+	0	NA	intron (NM_002715, intron 1 of 6)	MER5B|DNA|hAT-Charlie	18119	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
232637	chr9	136458451	136458750	+	0	NA	intron (NM_014866, intron 17 of 31)	AluY|SINE|Alu	-18755	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
102639	chr17	76027271	76028030	+	0	NA	promoter-TSS (NM_001988)	promoter-TSS (NM_001988)	-344	NM_001988	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
119927	chr19	41784351	41784980	+	0	NA	Intergenic	Intergenic	-11922	NM_001815	1084		NM_001815	ENSG00000170956	CEACAM3	CD66D|CEA|CGM1|CGM1a|W264|W282	CEA cell adhesion molecule 3	protein-coding
52341	chr12	54993001	54993560	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-8518	NM_001136030	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
209008	chr7	74284971	74285130	+	0	NA	Intergenic	Intergenic	-4357	NM_032421	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
118237	chr19	35211601	35212500	+	0	NA	Intergenic	Intergenic	16675	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
79214	chr16	360151	360250	+	0	NA	Intergenic	CpG	-7477	NM_181050	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
105940	chr18	3598801	3599030	+	0	NA	intron (NM_001242765, intron 4 of 8)	AluSz|SINE|Alu	4801	NR_024101	649446		NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
70041	chr14	100112021	100112480	+	0	NA	intron (NM_016337, intron 3 of 13)	intron (NM_016337, intron 3 of 13)	2595	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
74778	chr15	63255321	63255580	+	0	NA	intron (NM_016530, intron 3 of 7)	intron (NM_016530, intron 3 of 7)	-22100	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
58589	chr12	132460771	132461130	+	0	NA	Intergenic	AluSx|SINE|Alu	-29201	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
157436	chr22	45218851	45219550	+	0	NA	intron (NM_001009880, intron 1 of 9)	MIRb|SINE|MIR	-6816	NM_015264	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
34820	chr11	292221	292800	+	0	NA	intron (NM_025092, intron 5 of 13)	intron (NM_025092, intron 5 of 13)	3384	NM_025092	80162		NM_025092	ENSG00000142102	PGGHG	ATHL1	protein-glucosylgalactosylhydroxylysine glucosidase	protein-coding
213682	chr7	140081871	140082380	+	0	NA	Intergenic	Intergenic	-19174	NR_130117	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
152842	chr22	21981921	21983150	+	0	NA	5' UTR (NM_003935, exon 1 of 18)	5' UTR (NM_003935, exon 1 of 18)	252	NM_001349847	8940		NM_003935	ENSG00000100038	TOP3B	TOP3B1	DNA topoisomerase III beta	protein-coding
106095	chr18	9147301	9148260	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	10217	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
129145	chr2	65434851	65435050	+	0	NA	Intergenic	Intergenic	-2351	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
191828	chr6	14799901	14800200	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-446019	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
90929	chr17	2608221	2608900	+	0	NA	intron (NM_000430, intron 1 of 10)	AluJr|SINE|Alu	14906	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
6776	chr1	30754741	30755150	+	0	NA	intron (NM_006762, intron 1 of 7)	intron (NM_006762, intron 1 of 7)	2829	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
76343	chr15	74431651	74432300	+	0	NA	intron (NM_001146029, intron 1 of 12)	intron (NM_001146029, intron 1 of 12)	1729	NM_001146030	8482		NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|PFIC11|SEMAK1|SEMAL	semaphorin 7A (JohnMiltonHagen blood group)	protein-coding
1438	chr1	2628121	2629980	+	0	NA	intron (NM_033467, intron 2 of 23)	CpG	3966	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
19192	chr1	172344351	172344650	+	0	NA	intron (NM_015569, intron 17 of 20)	intron (NM_015569, intron 17 of 20)	-76185	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
138499	chr2	207153851	207154150	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	11948	NM_003709	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
94197	chr17	28575421	28575780	+	0	NA	intron (NM_005165, intron 1 of 8)	intron (NM_005165, intron 1 of 8)	1295	NM_005165	230		NM_005165	ENSG00000109107	ALDOC	ALDC	aldolase, fructose-bisphosphate C	protein-coding
208497	chr7	69166151	69166250	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	431424	NR_148926	100507468		NR_108105	ENSG00000234215	CT66	-	cancer/testis associated transcript 66	ncRNA
57635	chr12	122510471	122510630	+	0	NA	intron (NR_036434, intron 8 of 10)	intron (NR_036434, intron 8 of 10)	-9618	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
100635	chr17	63621711	63623330	+	0	NA	5' UTR (NM_203351, exon 1 of 17)	5' UTR (NM_203351, exon 1 of 17)	103	NM_203351	4215		NM_002401	ENSG00000198909	MAP3K3	MAPKKK3|MEKK3	mitogen-activated protein kinase kinase kinase 3	protein-coding
163615	chr3	52004071	52004450	+	0	NA	Intergenic	Intergenic	-8365	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
111201	chr19	3469221	3469880	+	0	NA	TTS (NM_001245005)	TTS (NM_001245005)	10975	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
121254	chr19	46679371	46679980	+	0	NA	intron (NM_001079881, intron 16 of 18)	AluSx1|SINE|Alu	18197	NR_040041	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
132563	chr2	106465421	106466030	+	0	NA	intron (NM_001144013, intron 1 of 22)	intron (NM_001144013, intron 1 of 22)	2688	NM_001144013	653489		NM_001144013	ENSG00000153165	RGPD3	RGP3	RANBP2 like and GRIP domain containing 3	protein-coding
42938	chr11	73411021	73411700	+	0	NA	intron (NM_015159, intron 5 of 7)	intron (NM_015159, intron 5 of 7)	34692	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
67420	chr14	70289171	70289430	+	0	NA	Intergenic	Intergenic	-41499	NR_003951	145241		NR_003951	ENSG00000293335	ADAM21P1	ADAM21P	ADAM metallopeptidase domain 21 pseudogene 1	pseudo
80367	chr16	2524971	2525300	+	0	NA	intron (NM_001330449, intron 3 of 10)	AluSx1|SINE|Alu	4764	NM_001330449	51005		NM_015944	ENSG00000162066	AMDHD2	CGI-14	amidohydrolase domain containing 2	protein-coding
48687	chr12	10584001	10585030	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	15320	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
159183	chr3	12836001	12836200	+	0	NA	exon (NM_001007074, exon 3 of 3)	exon (NM_001007074, exon 3 of 3)	4350	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
16901	chr1	155869071	155869450	+	0	NA	intron (NM_152280, intron 2 of 3)	intron (NM_152280, intron 2 of 3)	9693	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
147738	chr20	62400421	62400680	+	0	NA	intron (NM_031215, intron 1 of 9)	intron (NM_031215, intron 1 of 9)	6733	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
38619	chr11	46338601	46338800	+	0	NA	intron (NM_201532, intron 1 of 30)	intron (NM_201532, intron 1 of 30)	5774	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
72427	chr15	31475901	31476500	+	0	NA	3' UTR (NM_001382637, exon 13 of 13)	3' UTR (NM_001382637, exon 13 of 13)	149365	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
196412	chr6	43383501	43384930	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-14568	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
16372	chr1	154352051	154354150	+	0	NA	Intergenic	Intergenic	24302	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
32217	chr10	101804271	101804630	+	0	NA	intron (NM_001142434, intron 6 of 14)	AluY|SINE|Alu	13994	NM_012215	10724		NM_012215	ENSG00000198408	OGA	MEA5|MGEA5|NCOAT	O-GlcNAcase	protein-coding
42289	chr11	68337421	68338280	+	0	NA	intron (NM_002335, intron 1 of 22)	intron (NM_002335, intron 1 of 22)	25259	NM_002335	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
207216	chr7	43653121	43654150	+	0	NA	intron (NM_001321205, intron 1 of 3)	intron (NM_001321205, intron 1 of 3)	70527	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
28524	chr10	50415571	50415930	+	0	NA	intron (NM_147156, intron 6 of 10)	intron (NM_147156, intron 6 of 10)	-164234	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
134267	chr2	135709621	135710130	+	0	NA	intron (NM_001378107, intron 22 of 26)	intron (NM_001378107, intron 22 of 26)	-31980	NM_014607	23190		NM_014607	ENSG00000144224	UBXN4	UBXD2|UBXDC1|erasin	UBX domain protein 4	protein-coding
163488	chr3	50971541	50972280	+	0	NA	intron (NM_004947, intron 5 of 52)	L1PA15-16|LINE|L1	296830	NR_039950	100616138		NR_039950	ENSG00000272543	MIR4787	mir-4787	microRNA 4787	ncRNA
204269	chr7	2639101	2639800	+	0	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	7464	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
219242	chr8	66961821	66962080	+	0	NA	5' UTR (NM_001193502, exon 2 of 4)	5' UTR (NM_001193502, exon 2 of 4)	641	NM_001193502	100129654		NM_001193502	ENSG00000261787	TCF24	TCF-24|bHLHa25	transcription factor 24	protein-coding
114600	chr19	12952151	12952250	+	0	NA	TTS (NM_052850)	TTS (NM_052850)	5023	NM_052850	90480		NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1|mL64	GADD45G interacting protein 1	protein-coding
29933	chr10	73370971	73371130	+	0	NA	Intergenic	L1M4c|LINE|L1	-12186	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
214106	chr7	143881771	143883350	+	0	NA	intron (NM_001206938, intron 1 of 8).2	intron (NM_001206938, intron 1 of 8).2	2810	NM_001206941	9747		NM_014719	ENSG00000198420	TCAF1	FAM115A|GATD9A	TRPM8 channel associated factor 1	protein-coding
178862	chr4	154549551	154550950	+	0	NA	intron (NM_002669, intron 1 of 14)	CpG	150	NM_002669	5356		NM_002669	ENSG00000171566	PLRG1	Cwc1|PRL1|PRP46|PRPF46|TANGO4	pleiotropic regulator 1	protein-coding
111080	chr19	3174521	3175200	+	0	NA	Intergenic	Intergenic	-3909	NM_003775	8698		NM_003775	ENSG00000125910	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
149635	chr21	33481601	33482080	+	0	NA	Intergenic	Intergenic	-1831	NR_040016	757		NM_006134	ENSG00000142188	TMEM50B	C21orf4|HCVP7TP3	transmembrane protein 50B	protein-coding
56204	chr12	111454801	111455780	+	0	NA	intron (NM_001310121, intron 23 of 25)	intron (NM_001310121, intron 23 of 25)	20428	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
201581	chr6	149336001	149336380	+	0	NA	intron (NM_015093, intron 2 of 8)	intron (NM_015093, intron 2 of 8)	17890	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
102701	chr17	76142651	76142930	+	0	NA	3' UTR (NM_001330501, exon 18 of 18)	3' UTR (NM_001330501, exon 18 of 18)	-1545	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
128702	chr2	61586401	61586550	+	0	NA	Intergenic	AluY|SINE|Alu	-48119	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
79722	chr16	1322401	1322600	+	0	NA	intron (NM_194259, intron 7 of 7)	AluSx1|SINE|Alu	-11145	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
189881	chr5	177317571	177318730	+	0	NA	Intergenic	MER21-int|LTR|ERVL	-6252	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
105668	chr18	2606401	2607150	+	0	NA	intron (NM_006101, intron 14 of 16)	intron (NM_006101, intron 14 of 16)	35218	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
26059	chr10	12634901	12635380	+	0	NA	intron (NM_153498, intron 2 of 10)	L2b|LINE|L2	18057	NR_039701	100616320		NR_039701	ENSG00000283699	MIR4481	-	microRNA 4481	ncRNA
224987	chr9	33104151	33105780	+	0	NA	intron (NM_001378497, intron 2 of 2)	AluSz|SINE|Alu	-3727	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
234064	chrX	7925951	7926250	+	0	NA	exon (NM_004650, exon 2 of 7)	exon (NM_004650, exon 2 of 7)	1313	NM_004650	8228		NM_004650	ENSG00000006757	PNPLA4	DXS1283E|GS2|iPLA2eta	patatin like phospholipase domain containing 4	protein-coding
148091	chr20	63309221	63310350	+	0	NA	exon (NM_020882, exon 10 of 36)	exon (NM_020882, exon 10 of 36)	16599	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
158090	chr22	49995301	49995600	+	0	NA	3' UTR (NM_001001694, exon 15 of 15)	3' UTR (NM_001001694, exon 15 of 15)	17315	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
118010	chr19	34135901	34136300	+	0	NA	Intergenic	L1ME1|LINE|L1	-36404	NR_169265	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
110398	chr19	1945901	1946500	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	5028	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
208511	chr7	69803951	69804280	+	0	NA	intron (NM_001127232, intron 1 of 4)	intron (NM_001127232, intron 1 of 4)	205640	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
222512	chr8	140543251	140543350	+	0	NA	intron (NM_012154, intron 14 of 18)	intron (NM_012154, intron 14 of 18)	31304	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
150318	chr21	42012071	42012580	+	0	NA	intron (NR_119384, intron 1 of 1)	intron (NR_119384, intron 1 of 1)	-1965	NM_001320729	49854		NM_020727	ENSG00000173276	ZBTB21	ZNF295	zinc finger and BTB domain containing 21	protein-coding
114950	chr19	13987671	13988030	+	0	NA	intron (NM_002918, intron 2 of 20)	intron (NM_002918, intron 2 of 20)	18470	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
6245	chr1	27551321	27551580	+	0	NA	exon (NM_001371928, exon 8 of 9)	exon (NM_001371928, exon 8 of 9)	52044	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
227441	chr9	90192301	90192950	+	0	NA	Intergenic	L1PA4|LINE|L1	-151126	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
218978	chr8	61712301	61712700	+	0	NA	intron (NM_032466, intron 1 of 13)	intron (NM_032466, intron 1 of 13)	2092	NM_004318	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
126371	chr2	27445371	27445830	+	0	NA	intron (NM_015662, intron 45 of 47)	intron (NM_015662, intron 45 of 47)	3219	NM_001321325	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
80678	chr16	3031451	3032430	+	0	NA	promoter-TSS (NR_047572)	promoter-TSS (NR_047572)	-541	NR_047572	100128770		NR_047572	ENSG00000205890	LOC100128770	-	uncharacterized LOC100128770	ncRNA
167028	chr3	126472351	126472850	+	0	NA	intron (NR_104249, intron 1 of 8)	MER106B|DNA|hAT-Charlie	3291	NM_025112	79364		NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
21887	chr1	207801971	207802550	+	0	NA	promoter-TSS (NR_029832)	promoter-TSS (NR_029832)	263	NR_029518	407025		NR_029518	ENSG00000284203	MIR29B2	MIRN29B2	microRNA 29b-2	ncRNA
93541	chr17	19055271	19056450	+	0	NA	Intergenic	AluSc8|SINE|Alu	-6052	NR_003924	780852		NR_003924		SNORD3B-2	U3-2B|U3b2	small nucleolar RNA, C/D box 3B-2	snoRNA
211337	chr7	104922771	104923200	+	0	NA	intron (NR_027374, intron 1 of 3)	intron (NR_027374, intron 1 of 3)	3660	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
221057	chr8	116851201	116851730	+	0	NA	intron (NM_006265, intron 11 of 13)	intron (NM_006265, intron 11 of 13)	-22959	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
173385	chr4	7960571	7961330	+	0	NA	Intergenic	LTR47B4|LTR|ERVL	-21024	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
208836	chr7	73693401	73694080	+	0	NA	intron (NM_001202560, intron 9 of 12)	intron (NM_001202560, intron 9 of 12)	10143	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
88344	chr16	84547271	84547880	+	0	NA	Intergenic	Intergenic	-42916	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
14303	chr1	143802971	143803400	+	0	NA	Intergenic	Intergenic	9585	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
168154	chr3	139117201	139117850	+	0	NA	intron (NR_026783, intron 2 of 2)	Tigger3|DNA|TcMar-Tigger	13340	NR_026783	60467		NM_021812	ENSG00000232416	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis candidate 1	ncRNA
182391	chr5	61281021	61281680	+	0	NA	Intergenic	Intergenic	-16421	NR_146624	105378992		NR_146624	ENSG00000249279	LINC02057	-	long intergenic non-protein coding RNA 2057	ncRNA
153524	chr22	26555151	26555450	+	0	NA	promoter-TSS (NR_031615)	promoter-TSS (NR_031615)	23	NR_031615	100313914		NR_031615	ENSG00000221760	MIR548J	MIRN548J|hsa-mir-548j	microRNA 548j	ncRNA
189387	chr5	172720701	172721030	+	0	NA	Intergenic	Intergenic	-34638	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
218586	chr8	55860751	55861050	+	0	NA	Intergenic	Intergenic	-18935	NM_002350	4067		NM_002350	ENSG00000254087	LYN	JTK8|SAIDV|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding
63677	chr14	21073801	21074500	+	0	NA	exon (NM_018071, exon 3 of 24)	exon (NM_018071, exon 3 of 24)	-3278	NM_001282211	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
217000	chr8	23156521	23156780	+	0	NA	intron (NM_003840, intron 1 of 8)	AluJb|SINE|Alu	7377	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
107501	chr18	47915321	47915580	+	0	NA	intron (NM_001135937, intron 1 of 9)	L1ME3Cz|LINE|L1	15209	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
185499	chr5	131315151	131316150	+	0	NA	intron (NM_001038702, intron 1 of 4)	MER102b|DNA|hAT-Charlie	51597	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
25512	chr10	7256921	7257380	+	0	NA	intron (NM_001029880, intron 7 of 20)	intron (NM_001029880, intron 7 of 20)	-70366	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
75080	chr15	64385651	64385950	+	0	NA	intron (NR_109934, intron 1 of 3)	MLT2B3|LTR|ERVL	1887	NR_109934	9768		NM_014736	ENSG00000166803	PCLAF	KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF	PCNA clamp associated factor	protein-coding
175644	chr4	76430851	76431030	+	0	NA	Intergenic	Intergenic	-4289	NM_020859	57619		NM_020859	ENSG00000138771	SHROOM3	APXL3|MSTP013|SHRM|ShrmL	shroom family member 3	protein-coding
137664	chr2	197436901	197437100	+	0	NA	Intergenic	Ricksha_c|DNA|MULE-MuDR	-1907	NM_001005526	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
149552	chr21	33196621	33197190	+	0	NA	Intergenic	MIR3|SINE|MIR	-26669	NR_024102	728409		NR_024102		LINC01548	C21orf54	long intergenic non-protein coding RNA 1548	ncRNA
34738	chr10	133763741	133764330	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-137240	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
211516	chr7	105305601	105305800	+	0	NA	intron (NM_001350742, intron 2 of 16)	MER34A1|LTR|ERV1	-6921	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
46603	chr11	128550051	128550500	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	24133	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
118169	chr19	35031671	35032230	+	0	NA	intron (NM_001321605, intron 1 of 5)	intron (NM_001321605, intron 1 of 5)	679	NM_001321605	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
209464	chr7	76498821	76500380	+	0	NA	intron (NM_001102595, intron 5 of 9)	intron (NM_001102595, intron 5 of 9)	-10823	NM_030570	105375355		NM_030570	ENSG00000243566	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
182897	chr5	70202101	70202500	+	0	NA	intron (NR_024054, intron 3 of 6)	AluJr|SINE|Alu	23495	NR_024054	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
73686	chr15	44882071	44882230	+	0	NA	intron (NR_146394, intron 1 of 9)	HUERS-P1-int|LTR|ERV1	469	NR_146393	653381		NR_146393	ENSG00000290387	SORD2P	SORD2	sorbitol dehydrogenase 2, pseudogene	pseudo
34569	chr10	133228321	133228580	+	0	NA	Intergenic	AluJr|SINE|Alu	-1767	NM_003577	8433		NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
11264	chr1	89061701	89062300	+	0	NA	intron (NM_002053, intron 2 of 10)	L1MB3|LINE|L1	3208	NM_002053	2633		NM_002053	ENSG00000117228	GBP1	hGBP1	guanylate binding protein 1	protein-coding
123819	chr19	55178821	55181000	+	0	NA	promoter-TSS (NM_001297774)	promoter-TSS (NM_001297774)	379	NM_003180	6861		NM_003180	ENSG00000129990	SYT5	-	synaptotagmin 5	protein-coding
210613	chr7	100438721	100439700	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2713	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
25388	chr10	6497651	6497950	+	0	NA	intron (NM_001282644, intron 5 of 17)	intron (NM_001282644, intron 5 of 17)	82476	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
69180	chr14	92649401	92650140	+	0	NA	intron (NM_024832, intron 5 of 9)	intron (NM_024832, intron 5 of 9)	73536	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
126877	chr2	32066601	32067650	+	0	NA	intron (NM_001363875, intron 1 of 15)	AluSz|SINE|Alu	3569	NM_001377959	6683		NM_014946	ENSG00000021574	SPAST	ADPSP|FSP2|SPG4	spastin	protein-coding
227712	chr9	93036901	93037280	+	0	NA	TTS (NM_001083536)	TTS (NM_001083536)	-21598	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
190102	chr5	177873921	177874500	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1051	NR_003615	728554		NR_003615	ENSG00000291113	LOC728554	-	THO complex 3 pseudogene	pseudo
23824	chr1	234521621	234521880	+	0	NA	Intergenic	Intergenic	10029	NR_038426	100506795		NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
211831	chr7	108463621	108464300	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-7240	NM_001371122	4897		NM_005010	ENSG00000091129	NRCAM	NEDNMS	neuronal cell adhesion molecule	protein-coding
187842	chr5	147170801	147171000	+	0	NA	Intergenic	Intergenic	63959	NR_147190	105378217		NR_147190		STK32A-AS1	-	STK32A antisense RNA 1	ncRNA
55969	chr12	110080901	110081350	+	0	NA	Intergenic	AluJr|SINE|Alu	-7486	NR_148515	400073		NM_207435	ENSG00000174456	C12orf76	-	chromosome 12 open reading frame 76	protein-coding
95516	chr17	36537301	36537700	+	0	NA	exon (NM_001346755, exon 2 of 2)	exon (NM_001346755, exon 2 of 2)	-2043	NM_001163735	80179		NM_025109	ENSG00000278259	MYO19	MYOHD1	myosin XIX	protein-coding
51961	chr12	53758321	53758780	+	0	NA	Intergenic	Intergenic	-1516	NR_104332	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
98148	chr17	46025671	46026580	+	0	NA	non-coding (NR_165166, exon 10 of 10)	non-coding (NR_165166, exon 10 of 10)	26875	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
137763	chr2	198314571	198314880	+	0	NA	intron (NR_110267, intron 2 of 2)	intron (NR_110267, intron 2 of 2)	60372	NR_110267	101927619		NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
175743	chr4	77728571	77728930	+	0	NA	intron (NM_144571, intron 10 of 11)	intron (NM_144571, intron 10 of 11)	90314	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
165229	chr3	73002321	73003200	+	0	NA	intron (NM_001318025, intron 2 of 7)	AluSc8|SINE|Alu	5949	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
200261	chr6	132498701	132498900	+	0	NA	intron (NR_137169, intron 2 of 8)	intron (NR_137169, intron 2 of 8)	13983	NM_001326578	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
136487	chr2	177225271	177225450	+	0	NA	Intergenic	Intergenic	12566	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
194963	chr6	35309101	35309650	+	0	NA	intron (NM_022047, intron 1 of 10)	MIR|SINE|MIR	11557	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
217281	chr8	27354221	27354480	+	0	NA	intron (NM_173174, intron 6 of 35)	MLT1K|LTR|ERVL-MaLR	28786	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
82032	chr16	12079701	12081050	+	0	NA	intron (NM_032167, intron 11 of 20)	intron (NM_032167, intron 11 of 20)	103641	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
206489	chr7	33060121	33060650	+	0	NA	intron (NM_001374336, intron 1 of 10)	(T)n|Simple_repeat|Simple_repeat	2391	NM_001002010	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
108206	chr18	63136621	63137180	+	0	NA	intron (NM_000633, intron 2 of 2)	LTR16C|LTR|ERVL	182869	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
31936	chr10	100569521	100570350	+	0	NA	Intergenic	Intergenic	33992	NM_017902	55662		NM_017902	ENSG00000166135	HIF1AN	FIH1	hypoxia inducible factor 1 subunit alpha inhibitor	protein-coding
182436	chr5	62286801	62287300	+	0	NA	Intergenic	Intergenic	-19112	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
100552	chr17	62616651	62616950	+	0	NA	Intergenic	AluY|SINE|Alu	-10870	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
44672	chr11	110463171	110463430	+	0	NA	3' UTR (NM_004109, exon 4 of 4)	3' UTR (NM_004109, exon 4 of 4)	33352	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
62692	chr13	102771871	102772030	+	0	NA	intron (NM_138779, intron 1 of 5)	intron (NM_138779, intron 1 of 5)	1836	NR_104590	93081		NM_138779	ENSG00000151287	TEX30	C13orf27	testis expressed 30	protein-coding
98841	chr17	48432971	48433330	+	0	NA	Intergenic	Intergenic	-2936	NM_001075099	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
80169	chr16	2113051	2113480	+	0	NA	exon (NM_000296, exon 12 of 46)	exon (NM_000296, exon 12 of 46)	-6512	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
144372	chr20	35094151	35094250	+	0	NA	Intergenic	L1PB|LINE|L1	-1385	NM_199368	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
210714	chr7	100600021	100600730	+	0	NA	intron (NM_012172, intron 9 of 9)	intron (NM_012172, intron 9 of 9)	-1988	NM_002593	5118		NM_002593	ENSG00000106333	PCOLCE	PCPE|PCPE-1|PCPE1	procollagen C-endopeptidase enhancer	protein-coding
197151	chr6	59547651	59547950	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1586354	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
94399	chr17	28975921	28976380	+	0	NA	intron (NM_178860, intron 3 of 16)	intron (NM_178860, intron 3 of 16)	-24632	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
92085	chr17	7555521	7555780	+	0	NA	intron (NR_037146, intron 6 of 7)	intron (NR_037146, intron 6 of 7)	-2642	NM_172088	8741		NM_003808	ENSG00000161955	TNFSF13	APRIL|CD256|TALL-2|TALL2|TNLG7B|TRDL-1|UNQ383/PRO715|ZTNF2	TNF superfamily member 13	protein-coding
63368	chr13	114047121	114047880	+	0	NA	intron (NM_001320822, intron 3 of 23).2	L1M5|LINE|L1	30455	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
57412	chr12	121834501	121835380	+	0	NA	Intergenic	AluSp|SINE|Alu	23919	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
229482	chr9	122127601	122127800	+	0	NA	Intergenic	Intergenic	-7533	NR_039690	100616312		NR_039690	ENSG00000266583	MIR4478	mir-4478	microRNA 4478	ncRNA
142538	chr20	5090151	5090580	+	0	NA	intron (NM_001330987, intron 3 of 3)	HAL1|LINE|L1	22711	NM_001009923	29058		NM_014145	ENSG00000089063	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
196741	chr6	45351171	45351530	+	0	NA	intron (NM_001024630, intron 2 of 8)	L2c|LINE|L2	23020	NR_103532	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
84710	chr16	30874691	30877350	+	0	NA	promoter-TSS (NR_039744)	promoter-TSS (NR_039744)	560	NR_110942	101928736		NR_110940	ENSG00000260083	MIR762HG	-	MIR762 host gene	ncRNA
231015	chr9	129570501	129570700	+	0	NA	Intergenic	Intergenic	-38284	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
165047	chr3	71438671	71439400	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	103054	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
22623	chr1	223550671	223550830	+	0	NA	intron (NM_001143962, intron 15 of 20)	intron (NM_001143962, intron 15 of 20)	114951	NM_001143962	388743		NM_001143962	ENSG00000203697	CAPN8	nCL-2	calpain 8	protein-coding
13134	chr1	111655671	111655830	+	0	NA	intron (NM_001010935, intron 2 of 8)	AluY|SINE|Alu	-9044	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
1904	chr1	6456651	6457380	+	0	NA	intron (NM_031475, intron 10 of 12)	intron (NM_031475, intron 10 of 12)	9158	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
79655	chr16	1195571	1195730	+	0	NA	intron (NM_021098, intron 4 of 34)	intron (NM_021098, intron 4 of 34)	29618	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
97447	chr17	43660371	43660530	+	0	NA	intron (NM_004527, intron 1 of 2)	intron (NM_004527, intron 1 of 2)	1113	NM_013999	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
5401	chr1	25503471	25504330	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-39706	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
112860	chr19	7568221	7569000	+	0	NA	Intergenic	Intergenic	-27253	NM_020902	57662		NM_020902	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA|PPP1R80	calmodulin regulated spectrin associated protein family member 3	protein-coding
171557	chr3	196892051	196892150	+	0	NA	intron (NM_001308045, intron 2 of 8)	intron (NM_001308045, intron 2 of 8)	24180	NM_152699	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
18815	chr1	167648451	167648750	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	18368	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
238085	chrX	136237251	136237350	+	0	NA	intron (NM_001173517, intron 5 of 17)	intron (NM_001173517, intron 5 of 17)	14100	NM_024597	79649		NM_024597	ENSG00000129680	MAP7D3	MDP3	MAP7 domain containing 3	protein-coding
199271	chr6	111862471	111863280	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	10196	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
234408	chrX	16784671	16785030	+	0	NA	Intergenic	Intergenic	-1582	NM_001168683	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
4668	chr1	22449371	22449730	+	0	NA	Intergenic	Intergenic	-2301	NM_014870	9923		NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
66700	chr14	64233371	64234050	+	0	NA	intron (NR_073497, intron 6 of 6)	Tigger17a|DNA|TcMar-Tigger	17756	NM_182910	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
110730	chr19	2319951	2320580	+	0	NA	Intergenic	Intergenic	8321	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
183623	chr5	80224551	80224850	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluSq2|SINE|Alu	31348	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
172012	chr4	966371	967000	+	0	NA	intron (NM_001347, intron 11 of 22)	intron (NM_001347, intron 11 of 22)	6884	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
74258	chr15	57017001	57017200	+	0	NA	intron (NM_001322164, intron 3 of 19)	LTR40a|LTR|ERVL	97655	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
145680	chr20	44990221	44991900	+	0	NA	intron (NM_006282, intron 5 of 10)	HAL1|LINE|L1	24548	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
117311	chr19	19502701	19503300	+	0	NA	intron (NM_001384516, intron 12 of 12)	intron (NM_001384516, intron 12 of 12)	12548	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
157391	chr22	44735651	44736750	+	0	NA	intron (NM_001017530, intron 7 of 7)	L2|LINE|L2	-16358	NM_001198726	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
65445	chr14	51649751	51650530	+	0	NA	non-coding (NR_037676, exon 1 of 1)	non-coding (NR_037676, exon 1 of 1)	1604	NR_037676	145438		NR_037676	ENSG00000258537	FRMD6-AS1	C14orf82	FRMD6 antisense RNA 1	ncRNA
204137	chr7	2354401	2355630	+	0	NA	exon (NM_003751, exon 1 of 19)	exon (NM_003751, exon 1 of 19)	188	NM_001362791	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
134139	chr2	134178251	134178830	+	0	NA	intron (NM_001371457, intron 1 of 16)	LTR33A|LTR|ERVL	51415	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
31307	chr10	92619471	92619630	+	0	NA	intron (NM_004523, intron 9 of 21)	L1MD2|LINE|L1	26420	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
184395	chr5	98884121	98884730	+	0	NA	intron (NR_157078, intron 19 of 36)	L1PB1|LINE|L1	-44137	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
50497	chr12	47803201	47804050	+	0	NA	intron (NR_160436, intron 1 of 25)	L2b|LINE|L2	16278	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
46069	chr11	122748771	122749550	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	-89340	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
49628	chr12	28189971	28192350	+	0	NA	promoter-TSS (NR_148936)	promoter-TSS (NR_148936)	-422	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
174228	chr4	37823621	37824180	+	0	NA	Intergenic	Intergenic	-2786	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
190474	chr5	180127101	180127380	+	0	NA	intron (NM_175062, intron 6 of 13)	CpG	-55481	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
141894	chr20	840901	842050	+	0	NA	intron (NM_001289147, intron 1 of 1)	CpG	200	NM_001289147	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
63924	chr14	21992751	21993130	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-321923	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
5091	chr1	24743451	24743750	+	0	NA	Intergenic	MIRb|SINE|MIR	-1847	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
53889	chr12	70590051	70590230	+	0	NA	exon (NM_001330204, exon 8 of 33)	exon (NM_001330204, exon 8 of 33)	19884	NM_002837	5787		NM_002837	ENSG00000127329	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase receptor type B	protein-coding
37184	chr11	14091751	14092050	+	0	NA	intron (NM_006108, intron 5 of 15)	L1PA8|LINE|L1	129177	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
145569	chr20	44460871	44461130	+	0	NA	TTS (NR_132342)	TTS (NR_132342)	4344	NR_132342	140834		NM_178476	ENSG00000168746	LINC01620	C20orf62|dJ1013A22.3	long intergenic non-protein coding RNA 1620	ncRNA
9103	chr1	45300101	45300880	+	0	NA	Intergenic	Intergenic	-3420	NR_024270	400752		NR_024270	ENSG00000281912	LINC01144	-	long intergenic non-protein coding RNA 1144	ncRNA
201306	chr6	144352901	144353100	+	0	NA	intron (NM_007124, intron 1 of 73)	AluJb|SINE|Alu	-52655	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
183724	chr5	81017151	81017650	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-56493	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
70610	chr14	102796201	102796400	+	0	NA	intron (NM_001199427, intron 1 of 7)	MER21A|LTR|ERVL	18821	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
218807	chr8	59061021	59061480	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	57897	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
8511	chr1	40948721	40949300	+	0	NA	Intergenic	Intergenic	-30686	NR_125440	1503		NM_001905	ENSG00000171793	CTPS1	CTPS|GATD5|GATD5A|IMD24	CTP synthase 1	protein-coding
147390	chr20	58661021	58662230	+	0	NA	intron (NM_001134773, intron 2 of 8)	intron (NM_001134773, intron 2 of 8)	10342	NM_001204868	8675		NM_003763	ENSG00000124222	STX16	SYN-16|SYN16	syntaxin 16	protein-coding
114422	chr19	12671471	12672430	+	0	NA	TTS (NR_161468)	TTS (NR_161468)	2197	NM_032332	84292		NM_032332	ENSG00000123154	WDR83	MORG1	WD repeat domain 83	protein-coding
104705	chr17	81543971	81544480	+	0	NA	intron (NR_033338, intron 6 of 8)	intron (NR_033338, intron 6 of 8)	8128	NR_033338	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
155681	chr22	39045901	39046300	+	0	NA	intron (NM_145298, intron 4 of 6)	MLT1B|LTR|ERVL-MaLR	5236	NM_001006666	200316		NM_145298	ENSG00000128394	APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	apolipoprotein B mRNA editing enzyme catalytic subunit 3F	protein-coding
10802	chr1	77757551	77757650	+	0	NA	intron (NM_201626, intron 1 of 21)	intron (NM_201626, intron 1 of 21)	2252	NM_001377431	23032		NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
189014	chr5	168581171	168581330	+	0	NA	Intergenic	MER41B|LTR|ERV1	-1882	NM_024594	79646		NM_024594	ENSG00000120137	PANK3	-	pantothenate kinase 3	protein-coding
44225	chr11	96341271	96342340	+	0	NA	TTS (NR_036125)	TTS (NR_036125)	367	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
165404	chr3	97823721	97824180	+	0	NA	intron (NM_153605, intron 1 of 21)	intron (NM_153605, intron 1 of 21)	1939	NM_153605	131544		NM_153605	ENSG00000080200	CRYBG3	DKFZp667G2110|vlAKAP	crystallin beta-gamma domain containing 3	protein-coding
232930	chr9	136899671	136900030	+	0	NA	intron (NM_021138, intron 3 of 10)	AluJo|SINE|Alu	13117	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
170061	chr3	182861971	182862350	+	0	NA	intron (NM_014616, intron 12 of 29)	AluJb|SINE|Alu	68656	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
60760	chr13	44973001	44973230	+	0	NA	intron (NM_012345, intron 5 of 9)	intron (NM_012345, intron 5 of 9)	16356	NM_012345	26747		NM_012345	ENSG00000083635	NUFIP1	NUFIP|Rsa1|bA540M5.1	nuclear FMR1 interacting protein 1	protein-coding
5624	chr1	26164001	26164880	+	0	NA	TTS (NM_024869)	TTS (NM_024869)	4142	NM_001364667	110806296		NM_001364667	ENSG00000282872	C1orf232	-	chromosome 1 open reading frame 230	protein-coding
68578	chr14	89432301	89432780	+	0	NA	intron (NM_001085471, intron 1 of 6)	MIRb|SINE|MIR	15186	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
48181	chr12	7996971	7997480	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-35491	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
17132	chr1	156176601	156176800	+	0	NA	exon (NM_001193300, exon 16 of 16)	exon (NM_001193300, exon 16 of 16)	-17404	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
219126	chr8	66032251	66032850	+	0	NA	intron (NR_146171, intron 1 of 6)	intron (NR_146171, intron 1 of 6)	10997	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
64119	chr14	22835451	22835750	+	0	NA	promoter-TSS (NM_004995)	promoter-TSS (NM_004995)	-985	NM_004995	4323		NM_004995	ENSG00000157227	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14	protein-coding
123952	chr19	55393671	55394830	+	0	NA	intron (NM_001363697, intron 4 of 4)	AluSc8|SINE|Alu	6069	NR_106863	102465483		NR_106863	ENSG00000284029	MIR6805	hsa-mir-6805	microRNA 6805	ncRNA
140892	chr2	237671501	237671900	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-20464	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
191472	chr6	11111521	11112200	+	0	NA	promoter-TSS (NM_207582)	promoter-TSS (NM_207582)	-135	NM_207582	405754		NM_207582	ENSG00000244476	ERVFRD-1	ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD	endogenous retrovirus group FRD member 1, envelope	protein-coding
119620	chr19	40786121	40786580	+	0	NA	intron (NM_016154, intron 5 of 7)	intron (NM_016154, intron 5 of 7)	8103	NM_016154	53916		NM_016154	ENSG00000167578	RAB4B	-	RAB4B, member RAS oncogene family	protein-coding
122364	chr19	49356501	49357200	+	0	NA	intron (NM_001256661, intron 4 of 12)	intron (NM_001256661, intron 4 of 12)	4667	NM_001256661	8463		NM_003598	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain transcription factor 2	protein-coding
235649	chrX	48524351	48524950	+	0	NA	intron (NM_006579, intron 2 of 4)	(TTA)n|Simple_repeat|Simple_repeat	2842	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
105647	chr18	2104871	2105130	+	0	NA	Intergenic	Intergenic	466505	NM_022840	64863		NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase 4, N6-adenosine	protein-coding
174110	chr4	36195201	36195780	+	0	NA	intron (NR_146894, intron 6 of 32)	intron (NR_146894, intron 6 of 32)	48449	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
157846	chr22	48244951	48245250	+	0	NA	Intergenic	Intergenic	-29264	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	ncRNA
60795	chr13	45324701	45325200	+	0	NA	Intergenic	AluSz|SINE|Alu	11497	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
55747	chr12	108455851	108455950	+	0	NA	Intergenic	Intergenic	17789	NR_120483	102723562		NR_120483	ENSG00000247213	LINC01498	-	long intergenic non-protein coding RNA 1498	ncRNA
152432	chr22	20585601	20586030	+	0	NA	exon (NM_001293237, exon 16 of 17)	exon (NM_001293237, exon 16 of 17)	77768	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
44909	chr11	115217471	115218430	+	0	NA	exon (NM_001301044, exon 6 of 11)	exon (NM_001301044, exon 6 of 11)	-115627	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
94691	chr17	30654971	30655130	+	0	NA	Intergenic	AluSz|SINE|Alu	30732	NR_033420	6459		NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2	pseudo
8830	chr1	43037621	43037880	+	0	NA	Intergenic	Intergenic	78701	NR_033967	440584		NR_033967	ENSG00000227533	SLC2A1-DT	SLC2A1-AS1	SLC2A1 divergent transcript	ncRNA
225372	chr9	34986451	34987100	+	0	NA	intron (NR_109756, intron 1 of 1)	intron (NR_109756, intron 1 of 1)	2604	NR_109756	101926900		NR_109756	ENSG00000281491	DNAJB5-DT	DNAJB5-AS1	DNAJB5 divergent transcript	ncRNA
48888	chr12	12501121	12501380	+	0	NA	intron (NM_030640, intron 3 of 6)	intron (NM_030640, intron 3 of 6)	61613	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
123602	chr19	54485921	54486650	+	0	NA	Intergenic	AluSc8|SINE|Alu	-12989	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
76384	chr15	74616401	74617380	+	0	NA	intron (NM_001130028, intron 1 of 12)	intron (NM_001130028, intron 1 of 12)	1054	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
185477	chr5	131292151	131292930	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluSx|SINE|Alu	28487	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
134248	chr2	135055321	135055730	+	0	NA	intron (NM_001172435, intron 2 of 24)	AluJb|SINE|Alu	3233	NM_012233	22930		NM_012233	ENSG00000115839	RAB3GAP1	MARTS2|P130|RAB3GAP|RAB3GAP130|WARBM1	RAB3 GTPase activating protein catalytic subunit 1	protein-coding
116524	chr19	18173401	18174930	+	0	NA	intron (NM_006332, intron 1 of 6)	CpG	352	NM_006332	10437		NM_006332	ENSG00000216490	IFI30	GILT|IFI-30|IP-30|IP30	IFI30 lysosomal thiol reductase	protein-coding
67922	chr14	74628471	74628630	+	0	NA	Intergenic	Intergenic	-16313	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
223059	chr8	143384451	143384630	+	0	NA	TTS (NM_052924)	TTS (NM_052924)	15664	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
191565	chr6	11786001	11786450	+	0	NA	Intergenic	Intergenic	-7178	NM_001143948	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
163153	chr3	50154601	50157350	+	0	NA	non-coding (NR_135301, exon 1 of 4)	non-coding (NR_135301, exon 1 of 4)	110	NR_135301	100129060		NR_135301	ENSG00000235016	SEMA3F-AS1	RBM5-AS1	SEMA3F antisense RNA 1	ncRNA
67893	chr14	74491871	74492330	+	0	NA	intron (NM_001363688, intron 1 of 3)	LTR8|LTR|ERV1	1205	NM_006432	10577		NM_006432	ENSG00000119655	NPC2	EDDM1|HE1	NPC intracellular cholesterol transporter 2	protein-coding
95224	chr17	35256571	35257180	+	0	NA	intron (NM_144975, intron 1 of 4)	MER1B|DNA|hAT-Charlie	13803	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
159458	chr3	14125801	14127200	+	0	NA	intron (NM_024334, intron 1 of 11)	MIRb|SINE|MIR	1448	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
161785	chr3	45037251	45038100	+	0	NA	Intergenic	AluY|SINE|Alu	7532	NM_001308394	7123		NM_003278	ENSG00000163815	CLEC3B	MCDR4|TN|TNA	C-type lectin domain family 3 member B	protein-coding
213339	chr7	135481321	135481580	+	0	NA	intron (NM_013316, intron 1 of 10)	L1MA4A|LINE|L1	28652	NM_001190849	4850		NM_013316	ENSG00000080802	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex subunit 4	protein-coding
121311	chr19	46745841	46747700	+	0	NA	promoter-TSS (NM_013403)	promoter-TSS (NM_013403)	-320	NM_013403	29888		NM_013403	ENSG00000090372	STRN4	PPP2R6C|ZIN|zinedin	striatin 4	protein-coding
16862	chr1	155749101	155749300	+	0	NA	TTS (NM_001282858)	TTS (NM_001282858)	3432	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
89789	chr16	89486971	89487200	+	0	NA	intron (NM_001256182, intron 1 of 13)	intron (NM_001256182, intron 1 of 13)	3476	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
109892	chr19	1268461	1270630	+	0	NA	intron (NR_023313, intron 1 of 5)	CpG-13015	213	NR_023312	1153		NM_001280	ENSG00000099622	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
182879	chr5	69914171	69914680	+	0	NA	intron (NR_029426, intron 5 of 9).2	FLAM_C|SINE|Alu	-10405	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
21688	chr1	206723751	206723850	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	38895	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
92959	chr17	17063271	17064330	+	0	NA	intron (NM_015134, intron 1 of 22)	intron (NM_015134, intron 1 of 22)	21343	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
216988	chr8	23102351	23103060	+	0	NA	promoter-TSS (NM_003841)	promoter-TSS (NM_003841)	-216	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
128381	chr2	55033071	55034050	+	0	NA	intron (NM_001321904, intron 2 of 9)	Tigger17a|DNA|TcMar-Tigger	13766	NM_001321863	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133581	chr2	121644671	121644830	+	0	NA	intron (NM_001142274, intron 1 of 37)	AluJb|SINE|Alu	4712	NM_001378005	23332		NM_015282	ENSG00000074054	CLASP1	MAST1	cytoplasmic linker associated protein 1	protein-coding
126899	chr2	32368951	32369330	+	0	NA	intron (NM_016252, intron 1 of 73)	Helitron3Na_Mam|RC|Helitron	11924	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
102382	chr17	75573451	75573830	+	0	NA	intron (NM_004524, intron 21 of 24)	intron (NM_004524, intron 21 of 24)	-14418	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
80877	chr16	3613371	3613530	+	0	NA	Intergenic	L1MB7|LINE|L1	-1844	NM_032444	84464		NM_032444	ENSG00000188827	SLX4	BTBD12|FANCP|MUS312	SLX4 structure-specific endonuclease subunit	protein-coding
40009	chr11	62650701	62651100	+	0	NA	intron (NM_030628, intron 1 of 1)	AluJr|SINE|Alu	2402	NM_030628	80789		NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
168715	chr3	150738401	150738800	+	0	NA	intron (NR_121657, intron 1 of 2)	intron (NR_121657, intron 1 of 2)	385	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
147529	chr20	59300401	59300800	+	0	NA	promoter-TSS (NM_207033)	promoter-TSS (NM_207033)	-11	NM_207032	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
33182	chr10	113102051	113102350	+	0	NA	intron (NM_001146283, intron 5 of 12)	MIR|SINE|MIR	-24433	NM_001349871	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
626	chr1	1329251	1329880	+	0	NA	TTS (NM_001029885)	TTS (NM_001029885)	-1715	NM_152228	83756		NM_152228	ENSG00000169962	TAS1R3	T1R3	taste 1 receptor member 3	protein-coding
218782	chr8	58991421	58992600	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	127137	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
204028	chr7	1926901	1927630	+	0	NA	intron (NM_001304524, intron 15 of 16)	L1MDa|LINE|L1	13306	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
40663	chr11	64749051	64749850	+	0	NA	intron (NM_001164716, intron 15 of 17)	AluY|SINE|Alu	-3994	NM_153819	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
114907	chr19	13931921	13932380	+	0	NA	3' UTR (NM_001146255, exon 6 of 6)	3' UTR (NM_001146255, exon 6 of 6)	6267	NM_001370095	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
213033	chr7	131038201	131038850	+	0	NA	intron (NR_109850, intron 3 of 5)	AluSz|SINE|Alu	68505	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
135624	chr2	168192801	168193850	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	54270	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
35607	chr11	1760901	1761250	+	0	NA	intron (NM_001909, intron 2 of 8)	intron (NM_001909, intron 2 of 8)	2852	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
238553	chrX	153783571	153784250	+	0	NA	intron (NM_014370, intron 9 of 14)	intron (NM_014370, intron 9 of 14)	2869	NM_001170760	26576		NM_014370	ENSG00000184343	SRPK3	MSSK-1|MSSK1|STK23	SRSF protein kinase 3	protein-coding
223353	chr8	143859571	143860280	+	0	NA	exon (NM_031308, exon 2 of 2)	exon (NM_031308, exon 2 of 2)	18542	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
224680	chr9	21183071	21183750	+	0	NA	Intergenic	Intergenic	4272	NM_021068	3441		NM_021068	ENSG00000236637	IFNA4	IFN-alpha4a|INFA4	interferon alpha 4	protein-coding
74035	chr15	52261201	52262380	+	0	NA	intron (NM_018728, intron 9 of 40)	intron (NM_018728, intron 9 of 40)	15410	NR_031670	100302202		NR_031670	ENSG00000221052	MIR1266	MIRN1266|hsa-mir-1266|mir-1266	microRNA 1266	ncRNA
25716	chr10	9005771	9006130	+	0	NA	Intergenic	Intergenic	107961	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
101554	chr17	68019751	68020650	+	0	NA	Intergenic	CpG	-15535	NM_002266	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
193985	chr6	31737481	31739000	+	0	NA	promoter-TSS (NM_001287593).5	promoter-TSS (NM_001287593).5	-922	NM_001287593	1192		NM_001288	ENSG00000213719	CLIC1	CL1C1|CLCNL1|G6|NCC27	chloride intracellular channel 1	protein-coding
149756	chr21	34640101	34640750	+	0	NA	Intergenic	L1MB4|LINE|L1	-25312	NM_004414	1827		NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
221000	chr8	115664651	115664950	+	0	NA	intron (NM_001282903, intron 1 of 6)	intron (NM_001282903, intron 1 of 6)	3213	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
124186	chr19	56162401	56162600	+	0	NA	Intergenic	Intergenic	-13508	NM_033106	85569		NM_033106	ENSG00000197487	GALP	GAL	galanin like peptide	protein-coding
148873	chr21	8440901	8441700	+	0	NA	non-coding (NR_003287, exon 1 of 1).3	non-coding (NR_003287, exon 1 of 1).3	154	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
70457	chr14	102056001	102056400	+	0	NA	3' UTR (NM_001376, exon 78 of 78)	3' UTR (NM_001376, exon 78 of 78)	30844	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
180875	chr5	33443551	33443650	+	0	NA	intron (NM_001258437, intron 2 of 19)	AluY|SINE|Alu	2635	NM_152295	6897		NM_152295	ENSG00000113407	TARS1	TARS|TTD7|ThrRS	threonyl-tRNA synthetase 1	protein-coding
27822	chr10	38027871	38028300	+	0	NA	intron (NM_001278175, intron 5 of 5)	AluJo|SINE|Alu	17410	NM_001324177	7581		NM_006954	ENSG00000189180	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
131961	chr2	99487671	99488030	+	0	NA	intron (NM_001321460, intron 1 of 23)	intron (NM_001321460, intron 1 of 23)	2167	NM_001321455	51455		NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1 DNA directed polymerase	protein-coding
114657	chr19	13053571	13053930	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	28971	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
211712	chr7	106869301	106869500	+	0	NA	exon (NM_002649, exon 2 of 11)	exon (NM_002649, exon 2 of 11)	3921	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
27993	chr10	43119751	43120050	+	0	NA	intron (NM_020975, intron 14 of 19)	intron (NM_020975, intron 14 of 19)	15168	NM_001355216	5979		NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1	ret proto-oncogene	protein-coding
180340	chr5	6711021	6711280	+	0	NA	Intergenic	L2a|LINE|L2	-2282	NM_001171805	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
227831	chr9	93456351	93457080	+	0	NA	intron (NM_001286723, intron 1 of 9)	intron (NM_001286723, intron 1 of 9)	-3114	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
88383	chr16	84610351	84610450	+	0	NA	intron (NM_021149, intron 2 of 3)	MLT1K|LTR|ERVL-MaLR	7678	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
208446	chr7	66920321	66921700	+	0	NA	promoter-TSS (NM_017994)	promoter-TSS (NM_017994)	-215	NM_017994	55069		NM_017994	ENSG00000106609	TMEM248	C7orf42	transmembrane protein 248	protein-coding
224569	chr9	19493071	19493680	+	0	NA	Intergenic	Intergenic	84366	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
125973	chr2	25258071	25258850	+	0	NA	intron (NR_135490, intron 6 of 23)	intron (NR_135490, intron 6 of 23)	-6145	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
227516	chr9	91364551	91364850	+	0	NA	Intergenic	MER52C|LTR|ERV1	-2731	NM_001306190	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
34493	chr10	132544201	132545430	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	7028	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
59660	chr13	28505621	28505880	+	0	NA	Intergenic	Intergenic	-10622	NM_001160030	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
221281	chr8	122857821	122858080	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	76295	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
86109	chr16	57658751	57659050	+	0	NA	intron (NM_001370440, intron 11 of 14)	MIRb|SINE|MIR	-9406	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
115771	chr19	16341901	16344230	+	0	NA	Intergenic	AluSx3|SINE|Alu	18239	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
54298	chr12	89355601	89355800	+	0	NA	Intergenic	MIRc|SINE|MIR	-3199	NM_001946	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
135723	chr2	169361001	169361330	+	0	NA	intron (NM_004525, intron 1 of 78)	intron (NM_004525, intron 1 of 78)	1369	NM_004525	4036		NM_004525	ENSG00000081479	LRP2	DBS|GP330|LRP-2	LDL receptor related protein 2	protein-coding
70935	chr14	104433771	104433930	+	0	NA	Intergenic	Intergenic	-145914	NM_001286399	400258		NM_001008404	ENSG00000184601	C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
188170	chr5	150460551	150461600	+	0	NA	Intergenic	Intergenic	-11336	NM_001025071	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
13840	chr1	117637971	117638780	+	0	NA	Intergenic	Intergenic	32327	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
167269	chr3	128613871	128614630	+	0	NA	Intergenic	Intergenic	36568	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
164216	chr3	56917671	56918480	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	-1639	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
132914	chr2	111418321	111418580	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	76711	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
100756	chr17	63955801	63956000	+	0	NA	intron (NM_000334, intron 13 of 23)	intron (NM_000334, intron 13 of 23)	17018	NM_000334	6329		NM_000334	ENSG00000007314	SCN4A	CMS16|CMYP22A|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium voltage-gated channel alpha subunit 4	protein-coding
95712	chr17	38557951	38558800	+	0	NA	exon (NM_025248, exon 11 of 19)	exon (NM_025248, exon 11 of 19)	47577	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
165172	chr3	72400451	72400550	+	0	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	46123	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
216549	chr8	21896021	21896480	+	0	NA	Intergenic	Intergenic	17440	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
59695	chr13	29561301	29561700	+	0	NA	intron (NM_003045, intron 1 of 12)	intron (NM_003045, intron 1 of 12)	34188	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
202212	chr6	156793171	156793780	+	0	NA	intron (NM_001371656, intron 2 of 20)	AluJr|SINE|Alu	-13744	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
228211	chr9	97851751	97852050	+	0	NA	intron (NR_147055, intron 1 of 10)	CpG	1180	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
97826	chr17	44901271	44901930	+	0	NA	exon (NM_001258398, exon 3 of 4)	exon (NM_001258398, exon 3 of 4)	1871	NM_001258399	388389		NM_213607	ENSG00000167131	CCDC103	CILD17|PR46b|SMH	coiled-coil domain containing 103	protein-coding
6042	chr1	27120121	27120580	+	0	NA	intron (NM_003047, intron 1 of 11)	AluSq|SINE|Alu	34775	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
53414	chr12	64757771	64757930	+	0	NA	intron (NM_002076, intron 1 of 13)	intron (NM_002076, intron 1 of 13)	1556	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
7996	chr1	37989151	37990530	+	0	NA	intron (NM_006802, intron 1 of 16)	CpG	182	NM_001320830	10946		NM_006802	ENSG00000183431	SF3A3	PRP9|PRPF9|SAP61|SF3a60	splicing factor 3a subunit 3	protein-coding
131855	chr2	98693571	98694130	+	0	NA	intron (NM_012214, intron 2 of 15)	L1MDa|LINE|L1	-30377	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
202983	chr6	161373721	161374700	+	0	NA	intron (NM_013987, intron 9 of 10)	(GT)n|Simple_repeat|Simple_repeat	-96767	NR_134593	105378098		NR_134593		LOC105378098	-	uncharacterized LOC105378098	ncRNA
191104	chr6	4008101	4008640	+	0	NA	Intergenic	MIR|SINE|MIR	-12930	NM_003913	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
65558	chr14	51935551	51935850	+	0	NA	intron (NM_053064, intron 2 of 3)	MSTB|LTR|ERVL-MaLR	-17129	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
127201	chr2	38555151	38555500	+	0	NA	Intergenic	AluJr|SINE|Alu	-39585	NR_110259	101929596		NR_110259	ENSG00000231367	LINC02613	-	long intergenic non-protein coding RNA 2613	ncRNA
117254	chr19	19446001	19446480	+	0	NA	intron (NM_001384516, intron 2 of 12)	L1MB5|LINE|L1	11177	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
188624	chr5	157208801	157209380	+	0	NA	intron (NM_005546, intron 2 of 16)	AluSx3|SINE|Alu	28250	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
187432	chr5	142063551	142064450	+	0	NA	Intergenic	Intergenic	-44779	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
179208	chr4	173426051	173426550	+	0	NA	intron (NM_001329597, intron 2 of 3)	intron (NM_001329597, intron 2 of 3)	-27184	NM_007281	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
10961	chr1	84211601	84212000	+	0	NA	intron (NM_002731, intron 8 of 9)	MIR|SINE|MIR	30168	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
58247	chr12	128791751	128792650	+	0	NA	TTS (NM_145648)	TTS (NM_145648)	31758	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
123420	chr19	54097571	54097730	+	0	NA	intron (NM_001282350, intron 2 of 3).8	AluJo|SINE|Alu	5036	NM_001282350	126014		NM_130771	ENSG00000170909	OSCAR	PIGR3|PIgR-3	osteoclast associated Ig-like receptor	protein-coding
52649	chr12	56293201	56293400	+	0	NA	intron (NM_004077, intron 1 of 10)	intron (NM_004077, intron 1 of 10)	7030	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
192289	chr6	20534151	20535450	+	0	NA	intron (NM_017774, intron 1 of 15)	intron (NM_017774, intron 1 of 15)	343	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
46575	chr11	128503401	128504090	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	18565	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
182846	chr5	69366901	69367100	+	0	NA	intron (NM_001015892, intron 1 of 2).2	AluSq2|SINE|Alu	-2297	NM_133343	5884		NM_002873	ENSG00000152942	RAD17	CCYC|HRAD17|R24L|RAD17SP|RAD24	RAD17 checkpoint clamp loader component	protein-coding
173559	chr4	10092671	10093180	+	0	NA	intron (NM_005112, intron 2 of 11)	intron (NM_005112, intron 2 of 11)	-14233	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
194514	chr6	33293971	33294130	+	0	NA	exon (NM_001243738, exon 11 of 17)	exon (NM_001243738, exon 11 of 17)	3805	NR_106892	102465501		NR_106892	ENSG00000284064	MIR6834	hsa-mir-6834	microRNA 6834	ncRNA
109725	chr19	1084101	1084700	+	0	NA	intron (NM_012292, intron 22 of 22)	intron (NM_012292, intron 22 of 22)	7766	NM_001282334	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
119402	chr19	40235471	40236030	+	0	NA	intron (NM_001243027, intron 11 of 13)	intron (NM_001243027, intron 11 of 13)	-9061	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
212159	chr7	116861051	116861350	+	0	NA	Intergenic	AluSx|SINE|Alu	-1387	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
160035	chr3	18431401	18431980	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	-6351	NM_001195470	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
162333	chr3	47583251	47583550	+	0	NA	Intergenic	Intergenic	-3160	NM_001206945	10675		NM_006574	ENSG00000114646	CSPG5	NGC	chondroitin sulfate proteoglycan 5	protein-coding
103015	chr17	76924251	76924550	+	0	NA	intron (NM_144677, intron 8 of 16)	intron (NM_144677, intron 8 of 16)	44799	NR_136416	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
20334	chr1	197771521	197771780	+	0	NA	intron (NM_001300858, intron 2 of 15)	intron (NM_001300858, intron 2 of 15)	3830	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
236075	chrX	56733501	56733700	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	3984	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
146259	chr20	48924071	48925430	+	0	NA	intron (NM_006420, intron 1 of 38)	MIR|SINE|MIR	3039	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
174363	chr4	38847751	38847850	+	0	NA	intron (NM_006068, intron 1 of 1)	L1PA5|LINE|L1	9017	NM_006068	10333		NM_006068	ENSG00000174130	TLR6	CD286	toll like receptor 6	protein-coding
23741	chr1	232579901	232580400	+	0	NA	intron (NM_001377488, intron 1 of 21)	MER41B|LTR|ERV1	49983	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
66885	chr14	65104121	65104480	+	0	NA	Intergenic	Intergenic	-1605	NR_073138	4149		NM_002382	ENSG00000125952	MAX	PDMCS|bHLHd4	MYC associated factor X	protein-coding
86307	chr16	58732421	58732950	+	0	NA	intron (NM_001286220, intron 1 of 8)	intron (NM_001286220, intron 1 of 8)	1631	NM_001286220	2806		NM_002080	ENSG00000125166	GOT2	DEE82|KAT4|KATIV|KYAT4|mitAAT	glutamic-oxaloacetic transaminase 2	protein-coding
14061	chr1	120778271	120778430	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-27206	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
79526	chr16	811871	812430	+	0	NA	intron (NM_001013638, intron 2 of 2)	intron (NM_001013638, intron 2 of 2)	6707	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
49827	chr12	32139051	32139680	+	0	NA	intron (NR_148725, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	32518	NR_148725	636		NM_001714	ENSG00000151746	BICD1	BICD|bic-D 1	BICD cargo adaptor 1	protein-coding
44136	chr11	96124201	96124630	+	0	NA	intron (NM_032427, intron 1 of 4)	MIRc|SINE|MIR	-200308	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
19004	chr1	169572301	169572650	+	0	NA	intron (NM_000130, intron 2 of 24)	intron (NM_000130, intron 2 of 24)	14006	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
107628	chr18	48942371	48942680	+	0	NA	exon (NM_001190823, exon 1 of 2)	exon (NM_001190823, exon 1 of 2)	282	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
235676	chrX	48599651	48599950	+	0	NA	intron (NM_001347217, intron 5 of 9)	intron (NM_001347217, intron 5 of 9)	2308	NM_017883	64743		NM_017883	ENSG00000101940	WDR13	MG21	WD repeat domain 13	protein-coding
133306	chr2	113693551	113694230	+	0	NA	Intergenic	AluSc5|SINE|Alu	27478	NR_039943	100616208		NR_039943	ENSG00000265429	MIR4782	-	microRNA 4782	ncRNA
128506	chr2	60141421	60141680	+	0	NA	Intergenic	L1PA2|LINE|L1	241486	NR_132991	106660609		NR_132991	ENSG00000228590	MIR4432HG	-	MIR4432 host gene	ncRNA
157879	chr22	49705651	49705980	+	0	NA	Intergenic	Intergenic	-48296	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
120252	chr19	42425071	42425400	+	0	NA	intron (NR_073179, intron 1 of 1)	L2b|LINE|L2	1480	NR_073179	100996307		NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
135170	chr2	157851821	157851900	+	0	NA	intron (NM_001347664, intron 1 of 11)	(AC)n|Simple_repeat|Simple_repeat	-13230	NM_001347667	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
220561	chr8	100718771	100718950	+	0	NA	intron (NM_002568, intron 1 of 14)	intron (NM_002568, intron 1 of 14)	3228	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
188723	chr5	157351871	157352230	+	0	NA	intron (NM_014376, intron 23 of 30)	intron (NM_014376, intron 23 of 30)	-6373	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
97051	chr17	42342251	42343350	+	0	NA	intron (NM_001369519, intron 4 of 23)	intron (NM_001369519, intron 4 of 23)	45642	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
127080	chr2	37570871	37571030	+	0	NA	Intergenic	Intergenic	100692	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
18540	chr1	162072371	162072930	+	0	NA	intron (NM_014697, intron 1 of 9)	intron (NM_014697, intron 1 of 9)	2959	NM_001164757	9722		NM_014697	ENSG00000198929	NOS1AP	6330408P19Rik|CAPON|NPHS22	nitric oxide synthase 1 adaptor protein	protein-coding
217057	chr8	23403451	23404230	+	0	NA	intron (NM_002318, intron 1 of 13)	CpG	280	NM_002318	4017		NM_002318	ENSG00000134013	LOXL2	LOR|LOR2|WS9-14	lysyl oxidase like 2	protein-coding
222716	chr8	141318121	141318800	+	0	NA	Intergenic	Intergenic	-10172	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
140725	chr2	234438221	234439050	+	0	NA	Intergenic	Intergenic	15960	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
98724	chr17	48015751	48016050	+	0	NA	Intergenic	Alu|SINE|Alu	-16982	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
50264	chr12	46264751	46265750	+	0	NA	intron (NM_001278387, intron 1 of 17)	MIRb|SINE|MIR	1266	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
239428	chrY	56687651	56687950	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-266455	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
165068	chr3	71458351	71458650	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	83589	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
211441	chr7	105071351	105071880	+	0	NA	intron (NM_182931, intron 6 of 26)	AluSc|SINE|Alu	57410	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
23978	chr1	235206751	235207650	+	0	NA	intron (NM_031371, intron 16 of 22)	L2|LINE|L2	-17084	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
227337	chr9	89458301	89458930	+	0	NA	intron (NM_001371194, intron 1 of 15)	(CA)n|Simple_repeat|Simple_repeat	21275	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
20653	chr1	200129351	200130080	+	0	NA	intron (NM_205860, intron 7 of 7)	intron (NM_205860, intron 7 of 7)	86890	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
7761	chr1	36176271	36176630	+	0	NA	exon (NM_018067, exon 7 of 17)	exon (NM_018067, exon 7 of 17)	20290	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
121817	chr19	47935901	47936130	+	0	NA	Intergenic	L1MC4|LINE|L1	1834	NR_004435	100126798		NR_004435		SNAR-A1	SNAR-A53113498	small NF90 (ILF3) associated RNA A1	snRNA
43312	chr11	76233551	76233850	+	0	NA	Intergenic	Intergenic	-27198	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
145987	chr20	46367201	46367600	+	0	NA	exon (NM_133171, exon 22 of 22)	exon (NM_133171, exon 22 of 22)	-2942	NM_001281458	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
104936	chr17	81932671	81932830	+	0	NA	3' UTR (NM_006907, exon 7 of 7)	3' UTR (NM_006907, exon 7 of 7)	4550	NM_153824	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
114878	chr19	13879751	13880800	+	0	NA	intron (NR_146096, intron 2 of 2)	CpG	3026	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
11497	chr1	90838951	90839700	+	0	NA	intron (NR_147931, intron 1 of 2)	AluSx1|SINE|Alu	-3164	NR_147932	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
63878	chr14	21751101	21751300	+	0	NA	Intergenic	Intergenic	-80183	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
218850	chr8	60051901	60052400	+	0	NA	Intergenic	Intergenic	229250	NM_001321837	767		NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
216576	chr8	21948271	21948830	+	0	NA	intron (NM_001362802, intron 1 of 26)	Tigger3a|DNA|TcMar-Tigger	28888	NM_001362802	23039		NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
1191	chr1	2240221	2241450	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	12516	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
191	chr1	685801	686000	+	0	NA	exon (NM_001005277, exon 1 of 1).2	exon (NM_001005277, exon 1 of 1).2	754	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
28216	chr10	45056971	45057130	+	0	NA	Intergenic	L1MC4|LINE|L1	56127	NM_006963	7570		NM_006963	ENSG00000165512	ZNF22	HKR-T1|KOX15|ZNF422|Zfp422	zinc finger protein 22	protein-coding
37143	chr11	13464851	13464950	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-1603	NM_001297741	84280		NM_032320	ENSG00000148925	BTBD10	GMRP-1|GMRP1	BTB domain containing 10	protein-coding
142729	chr20	10090571	10090830	+	0	NA	intron (NR_040710, intron 3 of 4)	intron (NR_040710, intron 3 of 4)	55713	NM_198798	63926		NM_022096	ENSG00000132623	ANKEF1	ANKRD5	ankyrin repeat and EF-hand domain containing 1	protein-coding
128887	chr2	64119501	64119700	+	0	NA	intron (NM_020651, intron 1 of 6)	intron (NM_020651, intron 1 of 6)	24820	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
167137	chr3	127762221	127762700	+	0	NA	intron (NM_001003794, intron 3 of 7)	intron (NM_001003794, intron 3 of 7)	60422	NM_007283	11343		NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
30975	chr10	87909251	87909550	+	0	NA	intron (NM_001304718, intron 2 of 8)	AluSz6|SINE|Alu	45775	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
57910	chr12	123475071	123475650	+	0	NA	intron (NM_178314, intron 6 of 6)	intron (NM_178314, intron 6 of 6)	15656	NM_180699	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
43588	chr11	83118451	83118950	+	0	NA	Intergenic	Intergenic	-38431	NM_001346414	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
86936	chr16	68102051	68102800	+	0	NA	intron (NM_173165, intron 1 of 9)	HAL1|LINE|L1	17055	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
32709	chr10	104123301	104123650	+	0	NA	intron (NM_001384830, intron 2 of 3)	intron (NM_001384830, intron 2 of 3)	1304	NM_001002759	119392		NM_145247	ENSG00000156384	SFR1	C10orf78|MEI5|MEIR5|bA373N18.1	SWI5 dependent homologous recombination repair protein 1	protein-coding
90205	chr17	446601	447600	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1160	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
63171	chr13	113671901	113672490	+	0	NA	intron (NM_002929, intron 3 of 6)	(GTGTGTG)n|Simple_repeat|Simple_repeat	4976	NM_002929	6011		NM_002929	ENSG00000185974	GRK1	GPRK1|RHOK|RK	G protein-coupled receptor kinase 1	protein-coding
158523	chr3	3170851	3171550	+	0	NA	intron (NM_016302, intron 4 of 10)	intron (NM_016302, intron 4 of 10)	8491	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
51802	chr12	53388401	53389000	+	0	NA	intron (NM_138473, intron 3 of 5)	AluJb|SINE|Alu	8056	NM_003109	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
165096	chr3	71501921	71502550	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	39854	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
138477	chr2	206800601	206800950	+	0	NA	Intergenic	Intergenic	-17467	NR_036077	100422993		NR_036077	ENSG00000283469	MIR3130-1	MIR3130-3|mir-3130-1	microRNA 3130-1	ncRNA
208479	chr7	67128751	67129500	+	0	NA	intron (NM_018264, intron 13 of 15)	L1MC1|LINE|L1	-14728	NR_039793	100616310		NR_039793	ENSG00000266525	MIR4650-1	-	microRNA 4650-1	ncRNA
119174	chr19	39418571	39419130	+	0	NA	intron (NM_022835, intron 10 of 18)	intron (NM_022835, intron 10 of 18)	5071	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
171500	chr3	196619971	196620580	+	0	NA	Intergenic	Intergenic	12312	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
166695	chr3	120558751	120559780	+	0	NA	Intergenic	Intergenic	-37071	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
190285	chr5	179562071	179562230	+	0	NA	intron (NM_001040452, intron 2 of 17).2	AluSg7|SINE|Alu	2419	NM_001040451	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
42547	chr11	71707101	71707350	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	106634	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
26985	chr10	26779351	26779650	+	0	NA	intron (NR_145410, intron 2 of 11)	intron (NR_145410, intron 2 of 11)	81458	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
72846	chr15	40183721	40184180	+	0	NA	intron (NM_001211, intron 6 of 22)	intron (NM_001211, intron 6 of 22)	22881	NM_001211	701		NM_001211	ENSG00000156970	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
174069	chr4	26942021	26942280	+	0	NA	intron (NM_020860, intron 2 of 11)	intron (NM_020860, intron 2 of 11)	81309	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
38311	chr11	43890251	43890550	+	0	NA	intron (NM_139178, intron 6 of 9)	intron (NM_139178, intron 6 of 9)	-6903	NR_026952	729799		NR_026952	ENSG00000213693	SEC14L1P1	-	SEC14 like 1 pseudogene 1	pseudo
98212	chr17	46138971	46139130	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	53732	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
222133	chr8	132144821	132145080	+	0	NA	intron (NM_004519, intron 9 of 14)	intron (NM_004519, intron 9 of 14)	-39685	NM_001145095	10086		NM_005712	ENSG00000132297	HHLA1	PLA2L	HHLA1 neighbor of OC90	protein-coding
193492	chr6	30553471	30553630	+	0	NA	exon (NM_005275, exon 6 of 12)	exon (NM_005275, exon 6 of 12)	-3159	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
177016	chr4	106321921	106322180	+	0	NA	intron (NM_001142416, intron 1 of 6)	SVA_A|Retroposon|SVA	-5367	NM_001163436	93627		NM_033115	ENSG00000145348	TBCK	FERRY1|Fy-1|HSPC302|IHPRF3|TBCKL	TBC1 domain containing kinase	protein-coding
64317	chr14	23580301	23580700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1710	NM_032452	84502		NM_032452	ENSG00000092051	JPH4	JP4|JPHL1	junctophilin 4	protein-coding
34075	chr10	125002971	125003330	+	0	NA	intron (NM_022802, intron 2 of 8)	intron (NM_022802, intron 2 of 8)	2868	NM_001363508	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
162039	chr3	46698921	46699330	+	0	NA	intron (NM_001370524, intron 1 of 3)	AluSp|SINE|Alu	-2267	NM_147196	259236		NM_147196	ENSG00000181585	TMIE	DFNB6	transmembrane inner ear	protein-coding
210155	chr7	98253301	98253500	+	0	NA	Intergenic	Intergenic	-1168	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
154967	chr22	37274551	37274850	+	0	NA	Intergenic	Intergenic	-7808	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
166084	chr3	109023621	109023930	+	0	NA	intron (NM_014429, intron 17 of 27)	intron (NM_014429, intron 17 of 27)	-69896	NM_005459	9626		NM_005459	ENSG00000138472	GUCA1C	GCAP3	guanylate cyclase activator 1C	protein-coding
38754	chr11	47152951	47153730	+	0	NA	intron (NM_001003676, intron 4 of 7)	intron (NM_001003676, intron 4 of 7)	23539	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
139112	chr2	218959121	218959780	+	0	NA	promoter-TSS (NM_003936)	promoter-TSS (NM_003936)	-216	NM_003936	8941		NM_003936	ENSG00000171450	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin dependent kinase 5 regulatory subunit 2	protein-coding
192191	chr6	17694321	17694730	+	0	NA	intron (NM_001278209, intron 1 of 22)	AluSx|SINE|Alu	-11605	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
584	chr1	1284771	1285350	+	0	NA	intron (NR_037668, intron 5 of 16)	intron (NR_037668, intron 5 of 16)	4624	NM_001130413	6339		NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	sodium channel epithelial 1 subunit delta	protein-coding
175209	chr4	56681201	56681750	+	0	NA	promoter-TSS (NM_032495)	promoter-TSS (NM_032495)	-179	NM_032495	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
52016	chr12	53983471	53983980	+	0	NA	TTS (NR_047506)	TTS (NR_047506)	-1421	NM_017409	3226		NM_017409	ENSG00000180818	HOXC10	HOX3I	homeobox C10	protein-coding
16844	chr1	155686271	155686630	+	0	NA	intron (NM_139121, intron 1 of 10)	intron (NM_139121, intron 1 of 10)	2206	NM_001198903	55249		NM_018253	ENSG00000163374	YY1AP1	GRNG|HCCA1|HCCA2|YY1AP	YY1 associated protein 1	protein-coding
76697	chr15	75756871	75757230	+	0	NA	Intergenic	AluJb|SINE|Alu	5265	NR_036198	100423035		NR_036198	ENSG00000284385	MIR4313	-	microRNA 4313	ncRNA
149547	chr21	33078851	33079350	+	0	NA	Intergenic	Intergenic	8959	NM_138983	116448		NM_138983	ENSG00000184221	OLIG1	BHLHB6|BHLHE21	oligodendrocyte transcription factor 1	protein-coding
30085	chr10	73907451	73907950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3432	NM_001145031	5328		NM_002658	ENSG00000122861	PLAU	ATF|BDPLT5|QPD|UPA|URK|u-PA	plasminogen activator, urokinase	protein-coding
21710	chr1	206744571	206745930	+	0	NA	Intergenic	Intergenic	25353	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
226117	chr9	62912251	62912950	+	0	NA	Intergenic	Intergenic	-14513	NR_122076	403323		NM_203449		LERFS	-	lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting	ncRNA
86233	chr16	58125651	58126400	+	0	NA	intron (NR_136632, intron 1 of 5)	MIRb|SINE|MIR	3356	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
223179	chr8	143557651	143558980	+	0	NA	promoter-TSS (NM_024736)	promoter-TSS (NM_024736)	-31	NM_024736	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
163073	chr3	49958421	49959350	+	0	NA	intron (NR_146071, intron 1 of 15)	AluSg4|SINE|Alu	18735	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
87436	chr16	70739071	70739230	+	0	NA	intron (NM_001351157, intron 12 of 17)	MIRb|SINE|MIR	-15945	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
37021	chr11	12089871	12090730	+	0	NA	Intergenic	Intergenic	-20276	NM_001282668	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
28913	chr10	63163371	63163530	+	0	NA	Intergenic	AluSx|SINE|Alu	30122	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
212046	chr7	114962401	114962800	+	0	NA	intron (NM_199072, intron 3 of 4)	intron (NM_199072, intron 3 of 4)	40446	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
56410	chr12	113287621	113287880	+	0	NA	intron (NM_001143819, intron 20 of 28)	intron (NM_001143819, intron 20 of 28)	-3773	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
55585	chr12	106378821	106379080	+	0	NA	intron (NM_018082, intron 8 of 27)	intron (NM_018082, intron 8 of 27)	20868	NM_001160708	55703		NM_018082	ENSG00000013503	POLR3B	C128|CMT1I|HLD8|INMAP|RPC2	RNA polymerase III subunit B	protein-coding
70316	chr14	101826601	101827850	+	0	NA	intron (NM_001161725, intron 3 of 15)	AluSz|SINE|Alu	17362	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
27485	chr10	32057521	32057780	+	0	NA	Intergenic	LTR65|LTR|ERV1	-1225	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
152678	chr22	21607501	21607830	+	0	NA	intron (NM_003347, intron 2 of 3)	intron (NM_003347, intron 2 of 3)	22357	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
215132	chr7	155381151	155381700	+	0	NA	promoter-TSS (NR_147174)	promoter-TSS (NR_147174)	-651	NR_147174	100286906		NR_147174		LINC03010	-	long intergenic non-protein coding RNA 3010	ncRNA
119440	chr19	40398651	40399350	+	0	NA	intron (NM_020956, intron 5 of 5)	CpG	-8819	NM_144685	147746		NM_144685	ENSG00000160396	HIPK4	-	homeodomain interacting protein kinase 4	protein-coding
187857	chr5	147783771	147783930	+	0	NA	Intergenic	Intergenic	-1122	NM_001270941	9832		NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
88872	chr16	87697301	87697950	+	0	NA	3' UTR (NM_020655, exon 5 of 5)	3' UTR (NM_020655, exon 5 of 5)	68361	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
178970	chr4	160125651	160125830	+	0	NA	Intergenic	L1PA3|LINE|L1	-347956	NR_146278	109729132		NR_146278		LINC02233	-	long intergenic non-protein coding RNA 2233	ncRNA
39639	chr11	61565771	61566500	+	0	NA	intron (NM_001370211, intron 1 of 7)	intron (NM_001370211, intron 1 of 7)	14737	NM_001252065	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
34985	chr11	512801	513500	+	0	NA	Intergenic	AluSz|SINE|Alu	-5908	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
230549	chr9	128412101	128412880	+	0	NA	intron (NR_031672, intron 2 of 2).4	intron (NR_031672, intron 2 of 2).4	-6670	NM_001286760	51148		NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
93467	chr17	18786171	18786330	+	0	NA	intron (NM_001316919, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	-2785	NM_001316920	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
100547	chr17	62552971	62553500	+	0	NA	intron (NM_001375269, intron 7 of 20)	intron (NM_001375269, intron 7 of 20)	72122	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
232827	chr9	136733551	136733950	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-5566	NR_024543	84973		NM_032887	ENSG00000233016	SNHG7	NCRNA00061	small nucleolar RNA host gene 7	ncRNA
102829	chr17	76464421	76464680	+	0	NA	intron (NM_001166579, intron 3 of 6)	intron (NM_001166579, intron 3 of 6)	-3053	NM_001088	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
26075	chr10	13103221	13103680	+	0	NA	intron (NM_021980, intron 1 of 13)	L3|LINE|CR1	3287	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
20421	chr1	198205271	198205630	+	0	NA	intron (NM_133494, intron 1 of 9)	MER5B|DNA|hAT-Charlie	48452	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
120296	chr19	43468171	43468630	+	0	NA	Intergenic	AluSx|SINE|Alu	-2792	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
198435	chr6	106100701	106101450	+	0	NA	intron (NM_182907, intron 2 of 4)	L2b|LINE|L2	2134	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
191638	chr6	13302421	13303210	+	0	NA	intron (NR_134872, intron 5 of 7)	intron (NR_134872, intron 5 of 7)	-7229	NR_160971	100130357		NM_001242698	ENSG00000215022	LOC100130357	-	uncharacterized LOC100130357	ncRNA
75472	chr15	65942021	65942730	+	0	NA	intron (NR_169558, intron 10 of 22)	MamTip2|DNA|hAT-Tip100	72884	NM_001206836	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
229163	chr9	114501901	114502550	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	990	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
156125	chr22	40106501	40106800	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	61833	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
169069	chr3	153385401	153385600	+	0	NA	intron (NR_146713, intron 6 of 6)	intron (NR_146713, intron 6 of 6)	-98995	NR_160966	152118		NR_160966	ENSG00000237787	LINC02877	C3orf79	long intergenic non-protein coding RNA 2877	ncRNA
105427	chr17	82881421	82881680	+	0	NA	intron (NM_005993, intron 14 of 38)	intron (NM_005993, intron 14 of 38)	-41528	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
235429	chrX	45806151	45807090	+	0	NA	Intergenic	Intergenic	44870	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
165052	chr3	71443871	71445250	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	97529	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
65068	chr14	39408001	39408200	+	0	NA	intron (NM_203301, intron 1 of 3)	AluJb|SINE|Alu	24400	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
79861	chr16	1495121	1495630	+	0	NA	exon (NM_001351846, exon 3 of 21)	exon (NM_001351846, exon 3 of 21)	2015	NM_016111	9894		NM_016111	ENSG00000100726	TELO2	CLK2|TEL2|YHFS	telomere maintenance 2	protein-coding
74804	chr15	63443821	63444080	+	0	NA	Intergenic	Intergenic	53720	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
147915	chr20	62904621	62904900	+	0	NA	TTS (NM_080796)	TTS (NM_080796)	21745	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
142350	chr20	3753101	3753580	+	0	NA	TTS (NR_047675)	TTS (NR_047675)	14413	NM_001258430	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
232545	chr9	136344821	136345130	+	0	NA	intron (NM_001145638, intron 9 of 13)	intron (NM_001145638, intron 9 of 13)	-8082	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
176687	chr4	100895401	100896000	+	0	NA	Intergenic	MIRb|SINE|MIR	-220587	NR_046811	100874275		NR_046811	ENSG00000250223	LINC01216	EMCN-IT3	long intergenic non-protein coding RNA 1216	ncRNA
100825	chr17	64102871	64103230	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	27094	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
164208	chr3	56885771	56886480	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	30311	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
44729	chr11	111878321	111880330	+	0	NA	promoter-TSS (NR_038364)	promoter-TSS (NR_038364)	101	NM_001330371	64776		NM_022761	ENSG00000137720	CFAP68	C11orf1	cilia and flagella associated protein 68	protein-coding
78452	chr15	92843171	92843330	+	0	NA	Intergenic	AluSx|SINE|Alu	-39593	NR_037600	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
233794	chrX	1445721	1446630	+	0	NA	intron (NM_001173473, intron 1 of 12).2	LTR13_|LTR|ERVK	6734	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
169363	chr3	160415451	160416150	+	0	NA	intron (NM_005496, intron 8 of 22)	intron (NM_005496, intron 8 of 22)	11055	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
120268	chr19	42635071	42635230	+	0	NA	intron (NR_073180, intron 2 of 2)	intron (NR_073180, intron 2 of 2)	-40226	NM_001816	1088		NM_001816	ENSG00000124469	CEACAM8	CD66b|CD67|CGM6|NCA-95	CEA cell adhesion molecule 8	protein-coding
85852	chr16	57021121	57021380	+	0	NA	intron (NM_001384955, intron 3 of 47)	intron (NM_001384955, intron 3 of 47)	31693	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
79400	chr16	670371	670830	+	0	NA	intron (NM_001352285, intron 8 of 17)	intron (NM_001352285, intron 8 of 17)	2468	NM_001352284	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
234325	chrX	14027101	14027980	+	0	NA	intron (NM_001042479, intron 1 of 4)	intron (NM_001042479, intron 1 of 4)	2352	NM_017856	54960		NM_017856	ENSG00000046647	GEMIN8	FAM51A1	gem nuclear organelle associated protein 8	protein-coding
22047	chr1	210653871	210654430	+	0	NA	intron (NM_018194, intron 11 of 11).2	intron (NM_018194, intron 11 of 11).2	324784	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
78234	chr15	90662571	90662730	+	0	NA	intron (NR_120371, intron 2 of 2)	intron (NR_120371, intron 2 of 2)	2416	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
79168	chr16	289321	289580	+	0	NA	exon (NM_003502, exon 10 of 11)	exon (NM_003502, exon 10 of 11)	6286	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
171542	chr3	196754501	196754900	+	0	NA	intron (NM_002577, intron 1 of 14)	intron (NM_002577, intron 1 of 14)	14843	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
152351	chr22	20438921	20439600	+	0	NA	Intergenic	Intergenic	-1435	NM_182895	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
188050	chr5	149901501	149901900	+	0	NA	intron (NM_000440, intron 8 of 21)	intron (NM_000440, intron 8 of 21)	31277	NR_110534	644762		NR_110534		MFFP2	-	MFF pseudogene 2	pseudo
184910	chr5	112899601	112899800	+	0	NA	intron (NM_005669, intron 3 of 4)	L1ME3G|LINE|L1	22527	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
131726	chr2	98086751	98087250	+	0	NA	promoter-TSS (NR_144297)	promoter-TSS (NR_144297)	-167	NR_144296	200403		NM_144992	ENSG00000168658	VWA3B	SCAR22	von Willebrand factor A domain containing 3B	protein-coding
196380	chr6	43263001	43263950	+	0	NA	intron (NM_032538, intron 13 of 14)	L2c|LINE|L2	19994	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
67348	chr14	69675021	69675350	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	63589	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
15443	chr1	150306601	150306800	+	0	NA	intron (NM_031901, intron 2 of 2)	AluSp|SINE|Alu	12839	NM_031901	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
233693	chrX	1185401	1185800	+	0	NA	Intergenic	AluJo|SINE|Alu	27049	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
230988	chr9	129492371	129493200	+	0	NA	intron (NR_038955, intron 1 of 4)	MIR3|SINE|MIR	4125	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
23088	chr1	226657721	226657980	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	17218	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
68813	chr14	91257271	91257430	+	0	NA	Intergenic	Intergenic	-3470	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
121976	chr19	48494971	48495130	+	0	NA	intron (NM_001080434, intron 12 of 15)	AluSx1|SINE|Alu	18139	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
193456	chr6	30505701	30506450	+	0	NA	Intergenic	Intergenic	-10191	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
135444	chr2	161201701	161202100	+	0	NA	intron (NM_133484, intron 2 of 3)	intron (NM_133484, intron 2 of 3)	41472	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
177464	chr4	113687221	113687530	+	0	NA	intron (NM_001321585, intron 2 of 19)	intron (NM_001321585, intron 2 of 19)	74363	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
149825	chr21	35021771	35022550	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	17266	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
73380	chr15	42553671	42553830	+	0	NA	intron (NM_001130447, intron 1 of 4)	intron (NM_001130447, intron 1 of 4)	4912	NM_001130447	55142		NM_018097	ENSG00000137814	HAUS2	C15orf25|CEP27|HsT17025	HAUS augmin like complex subunit 2	protein-coding
208626	chr7	72972601	72973200	+	0	NA	non-coding (NR_003602, exon 5 of 5)	non-coding (NR_003602, exon 5 of 5)	3218	NR_104007	100101148		NR_104007		FKBP6P1	-	FKBP6 pseudogene 1	pseudo
35774	chr11	2163371	2163850	+	0	NA	TTS (NM_199293)	TTS (NM_199293)	-2401	NM_001291897	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
176719	chr4	101284501	101285180	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	-43968	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
67702	chr14	73249771	73250130	+	0	NA	intron (NM_173462, intron 5 of 25)	intron (NM_173462, intron 5 of 25)	-3949	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
108120	chr18	62324821	62326450	+	0	NA	intron (NM_001270950, intron 1 of 7)	CpG	325	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
173777	chr4	17575121	17575380	+	0	NA	Intergenic	Intergenic	-1948	NM_015907	51056		NM_015907	ENSG00000002549	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
130524	chr2	85613501	85614230	+	0	NA	intron (NM_001256727, intron 1 of 12)	AluJb|SINE|Alu	1762	NM_001256727	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
163379	chr3	50490351	50490650	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	13134	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
35615	chr11	1772121	1773350	+	0	NA	Intergenic	Intergenic	-8808	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
166317	chr3	112736721	112737630	+	0	NA	promoter-TSS (NR_162092)	promoter-TSS (NR_162092)	86	NR_162092	113218483		NR_162092		MIR9900	-	microRNA 9900	ncRNA
227508	chr9	91338651	91339150	+	0	NA	intron (NM_001351432, intron 4 of 10)	L1MC4a|LINE|L1	23018	NM_001698	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
202844	chr6	159757901	159759230	+	0	NA	intron (NM_001322817, intron 1 of 7)	intron (NM_001322817, intron 1 of 7)	-3480	NM_005891	39		NM_005891	ENSG00000120437	ACAT2	-	acetyl-CoA acetyltransferase 2	protein-coding
196234	chr6	42844901	42845300	+	0	NA	intron (NM_015349, intron 5 of 11)	intron (NM_015349, intron 5 of 11)	24044	NM_015349	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
10438	chr1	66245501	66245700	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-86508	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
125235	chr2	10381821	10383480	+	0	NA	intron (NM_001258359, intron 1 of 4)	intron (NM_001258359, intron 1 of 4)	13886	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
217177	chr8	26306171	26306700	+	0	NA	intron (NM_002717, intron 2 of 9)	AluSz|SINE|Alu	13219	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
20509	chr1	198666171	198666330	+	0	NA	intron (NM_002838, intron 2 of 32)	AluJb|SINE|Alu	27210	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
161399	chr3	41216871	41217830	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	17845	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
215964	chr8	8669721	8670080	+	0	NA	Intergenic	Intergenic	-32037	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
35432	chr11	1438951	1439050	+	0	NA	intron (NM_001256630, intron 3 of 19)	intron (NM_001256630, intron 3 of 19)	27848	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
221924	chr8	129821471	129821850	+	0	NA	Intergenic	Intergenic	-35036	NM_031415	56169		NM_031415	ENSG00000147697	GSDMC	MLZE	gasdermin C	protein-coding
128518	chr2	60581571	60582020	+	0	NA	Intergenic	CpG	-28141	NM_022893	53335		NM_018014	ENSG00000119866	BCL11A	CTIP1|DILOS|EVI9|HBFQTL5|SMARCM1|ZNF856	BCL11 transcription factor A	protein-coding
133318	chr2	113888821	113890400	+	0	NA	promoter-TSS (NR_102318)	promoter-TSS (NR_102318)	-324	NR_102318	10096		NM_005721	ENSG00000115091	ACTR3	ARP3	actin related protein 3	protein-coding
58965	chr13	19852971	19853130	+	0	NA	intron (NM_001039649, intron 2 of 4)	AluJr|SINE|Alu	10586	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
206378	chr7	30681171	30681330	+	0	NA	intron (NM_001202483, intron 2 of 12)	intron (NM_001202483, intron 2 of 12)	1206	NM_001883	1395		NM_001883	ENSG00000106113	CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
51793	chr12	53372821	53373080	+	0	NA	Intergenic	AluY|SINE|Alu	-7226	NM_001251825	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
107448	chr18	46336321	46336580	+	0	NA	non-coding (NR_046357, exon 2 of 2)	non-coding (NR_046357, exon 2 of 2)	2226	NM_001256758	494470		NM_152470	ENSG00000141622	ARK2C	ARKL2|RNF111L2|RNF165|lncAMPC	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C	protein-coding
7869	chr1	36388651	36388950	+	0	NA	Intergenic	AluJr|SINE|Alu	-2876	NM_001282546	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
112972	chr19	7861871	7863850	+	0	NA	intron (NM_145245, intron 16 of 18)	CpG-13572	11530	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
189775	chr5	176656801	176657280	+	0	NA	intron (NM_001366492, intron 6 of 6)	intron (NM_001366492, intron 6 of 6)	9556	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
171797	chr4	497451	497750	+	0	NA	intron (NM_133474, intron 1 of 2)	MER4A1|LTR|ERV1	1556	NM_133474	170960		NM_133474	ENSG00000182903	ZNF721	-	zinc finger protein 721	protein-coding
32929	chr10	110268551	110268900	+	0	NA	intron (NM_005962, intron 3 of 5)	intron (NM_005962, intron 3 of 5)	36195	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
97561	chr17	44083821	44084800	+	0	NA	intron (NM_001382393, intron 16 of 26)	intron (NM_001382393, intron 16 of 26)	13399	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
222708	chr8	141306751	141306850	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	1488	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
194195	chr6	32150551	32151310	+	0	NA	intron (NM_030651, intron 1 of 3).2	intron (NM_030651, intron 1 of 3).2	1009	NM_030651	80863		NM_030651	ENSG00000204314	PRRT1	C6orf31|DSPD1|IFITMD7|NG5|SynDIG4	proline rich transmembrane protein 1	protein-coding
225661	chr9	36450051	36450430	+	0	NA	Intergenic	L1MB4|LINE|L1	-49042	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
123996	chr19	55450851	55452350	+	0	NA	Intergenic	CpG	-8737	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
140856	chr2	237432321	237433250	+	0	NA	Intergenic	Intergenic	-18578	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
166811	chr3	122646301	122646750	+	0	NA	Intergenic	HAL1|LINE|L1	30910	NM_001308321	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
79679	chr16	1252471	1252830	+	0	NA	Intergenic	L1MEc|LINE|L1	-3419	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
230576	chr9	128550021	128551280	+	0	NA	intron (NR_031672, intron 2 of 2).4	intron (NR_031672, intron 2 of 2).4	-1937	NM_001375318	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
211621	chr7	106019751	106020050	+	0	NA	intron (NM_001301161, intron 11 of 17)	intron (NM_001301161, intron 11 of 17)	56636	NM_152750	222256		NM_152750	ENSG00000128536	CDHR3	CDH28	cadherin related family member 3	protein-coding
26493	chr10	17847671	17847900	+	0	NA	intron (NM_002438, intron 6 of 29)	intron (NM_002438, intron 6 of 29)	2678	NR_030167	574445		NR_030167	ENSG00000207938	MIR511	MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511	microRNA 511	ncRNA
231673	chr9	131679701	131679950	+	0	NA	intron (NM_001377935, intron 1 of 26)	MLT1E1A|LTR|ERVL-MaLR	-28422	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
91845	chr17	7209451	7209980	+	0	NA	intron (NR_135527, intron 3 of 20)	AluJb|SINE|Alu	-2444	NM_001369566	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
58990	chr13	19987201	19987600	+	0	NA	intron (NM_001353162, intron 4 of 26)	AluSx3|SINE|Alu	28376	NM_001353161	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
135050	chr2	156344901	156345100	+	0	NA	Intergenic	Intergenic	-2880	NR_147695	440918		NR_147695		FLJ46875	-	uncharacterized LOC440918	ncRNA
108674	chr18	76859121	76859980	+	0	NA	intron (NM_001306089, intron 3 of 30)	intron (NM_001306089, intron 3 of 30)	35790	NM_007345	7776		NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
50242	chr12	46243671	46243830	+	0	NA	intron (NM_001077484, intron 1 of 16)	intron (NM_001077484, intron 1 of 16)	22766	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
27296	chr10	30427351	30428350	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-6171	NM_001244134	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
121588	chr19	47305221	47305750	+	0	NA	Intergenic	Intergenic	-4376	NM_001736	728		NM_001736	ENSG00000197405	C5AR1	C5A|C5AR|C5R1|CD88	complement C5a receptor 1	protein-coding
14551	chr1	144883071	144883530	+	0	NA	intron (NR_104189, intron 2 of 3).2	CpG	165129	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
2317	chr1	9116551	9116850	+	0	NA	intron (NM_024980, intron 1 of 3)	AluSx3|SINE|Alu	12402	NM_024980	80045		NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
166536	chr3	114827501	114827730	+	0	NA	intron (NM_015642, intron 3 of 9)	intron (NM_015642, intron 3 of 9)	-45418	NR_126422	104413890		NR_126422	ENSG00000239946	ZBTB20-AS3	-	ZBTB20 antisense RNA 3	ncRNA
35254	chr11	856971	857730	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	12904	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
96538	chr17	40356201	40356680	+	0	NA	3' UTR (NM_001024809, exon 8 of 8)	3' UTR (NM_001024809, exon 8 of 8)	8297	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
179216	chr4	173508801	173509000	+	0	NA	intron (NM_001329597, intron 1 of 3)	intron (NM_001329597, intron 1 of 3)	10244	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
178699	chr4	152555151	152555250	+	0	NA	Intergenic	L2a|LINE|L2	18772	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
237745	chrX	129603871	129604630	+	0	NA	Intergenic	AluSx|SINE|Alu	50706	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
212079	chr7	115030551	115030650	+	0	NA	Intergenic	L1PA2|LINE|L1	-48358	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
4173	chr1	19406071	19406900	+	0	NA	intron (NM_001313932, intron 2 of 4)	intron (NM_001313932, intron 2 of 4)	77810	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
197893	chr6	89345101	89345300	+	0	NA	intron (NM_016021, intron 1 of 7)	intron (NM_016021, intron 1 of 7)	7522	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
223146	chr8	143517901	143518450	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	-11927	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
225805	chr9	37590251	37590750	+	0	NA	intron (NM_001001790, intron 1 of 1)	L1MB7|LINE|L1	2097	NM_001001790	401505		NM_001001790	ENSG00000175768	TOMM5	C9orf105|Tom5|bA613M10.3	translocase of outer mitochondrial membrane 5	protein-coding
19835	chr1	182863971	182864280	+	0	NA	intron (NM_001357, intron 12 of 27)	AluJr|SINE|Alu	-24534	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
188444	chr5	154472721	154472980	+	0	NA	Intergenic	Intergenic	5377	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
63513	chr13	114267801	114269430	+	0	NA	intron (NM_001330104, intron 16 of 16)	intron (NM_001330104, intron 16 of 16)	-5213	NR_039724	100616227		NR_039724	ENSG00000265450	MIR4502	-	microRNA 4502	ncRNA
123640	chr19	54648251	54648350	+	0	NA	Intergenic	Intergenic	2991	NR_107028	102466251		NR_107028	ENSG00000277636	MIR8061	hsa-mir-8061	microRNA 8061	ncRNA
236155	chrX	63761601	63761880	+	0	NA	intron (NM_001330495, intron 1 of 10)	intron (NM_001330495, intron 1 of 10)	-6524	NM_001353923	23229		NM_015185	ENSG00000131089	ARHGEF9	COLLYBISTIN|DEE8|EIEE8|HPEM-2|PEM-2|PEM2	Cdc42 guanine nucleotide exchange factor 9	protein-coding
18608	chr1	165699601	165699830	+	0	NA	intron (NR_036683, intron 1 of 3)	intron (NR_036683, intron 1 of 3)	965	NR_036683	440700		NR_036683	ENSG00000293132	LOC440700	-	carbonic anhydrase 14 pseudogene	pseudo
155459	chr22	38478971	38479380	+	0	NA	intron (NM_006855, intron 2 of 4)	FLAM_A|SINE|Alu	11079	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
86315	chr16	60523151	60523250	+	0	NA	Intergenic	L1PA2|LINE|L1	532566	NR_039624	100616345		NR_039624	ENSG00000283795	MIR4426	-	microRNA 4426	ncRNA
65994	chr14	58197671	58198480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2074	NM_018477	55860		NM_018477	ENSG00000131966	ACTR10	ACTR11|Arp10|Arp11|HARP11	actin related protein 10	protein-coding
109856	chr19	1226451	1227080	+	0	NA	intron (NM_000455, intron 9 of 9)	CpG	11240	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
108773	chr18	77141771	77142150	+	0	NA	Intergenic	Intergenic	-9177	NM_001025101	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
231774	chr9	132247671	132248180	+	0	NA	Intergenic	AluSp|SINE|Alu	85867	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
229310	chr9	120872851	120874050	+	0	NA	intron (NM_001286840, intron 3 of 14)	intron (NM_001286840, intron 3 of 14)	3738	NM_001009936	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
1086	chr1	1942851	1943150	+	0	NA	intron (NM_001304360, intron 21 of 38)	intron (NM_001304360, intron 21 of 38)	-23721	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
96769	chr17	41732871	41733250	+	0	NA	intron (NM_177977, intron 1 of 10)	AluSq2|SINE|Alu	1583	NM_001367462	9001		NM_003949	ENSG00000173805	HAP1	HAP2|HIP5|HLP|hHLP1	huntingtin associated protein 1	protein-coding
64456	chr14	24238171	24239030	+	0	NA	exon (NM_001351026, exon 11 of 11)	exon (NM_001351026, exon 11 of 11)	4023	NM_001099274	26277		NM_012461	ENSG00000092330	TINF2	DKCA3|TIN2	TERF1 interacting nuclear factor 2	protein-coding
187678	chr5	143229301	143230440	+	0	NA	TTS (NM_001135608)	TTS (NM_001135608)	37370	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
97292	chr17	43172921	43173730	+	0	NA	intron (NM_001291571, intron 1 of 20)	AluSz|SINE|Alu	2111	NM_001291572	4077		NM_005899	ENSG00000188554	NBR1	1A1-3B|IAI3B|M17S2|MIG19	NBR1 autophagy cargo receptor	protein-coding
214220	chr7	148773351	148774000	+	0	NA	intron (NM_001370660, intron 9 of 21)	intron (NM_001370660, intron 9 of 21)	73965	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
152857	chr22	22248951	22249330	+	0	NA	Intergenic	L2c|LINE|L2	4354	NM_007128	7441		NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	V-set pre-B cell surrogate light chain 1	protein-coding
37391	chr11	17076051	17076650	+	0	NA	promoter-TSS (NR_001452)	promoter-TSS (NR_001452)	-482	NR_001452	85388		NR_001452	ENSG00000201403	SNORD14B	RNU14B|U14|U14B	small nucleolar RNA, C/D box 14B	snoRNA
37856	chr11	33739351	33739650	+	0	NA	Intergenic	AluSz|SINE|Alu	-3021	NM_203329	966		NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
25894	chr10	11271851	11272150	+	0	NA	intron (NM_001326330, intron 7 of 12)	MIRb|SINE|MIR	72674	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
154355	chr22	32881071	32881880	+	0	NA	intron (NM_133633, intron 3 of 11)	intron (NM_133633, intron 3 of 11)	79770	NM_000362	7078		NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
163346	chr3	50432071	50432230	+	0	NA	intron (NM_006030, intron 3 of 37)	intron (NM_006030, intron 3 of 37)	66787	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
210075	chr7	96685201	96686000	+	0	NA	intron (NR_163952, intron 2 of 6)	MIR|SINE|MIR	-21262	NR_038948	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
84887	chr16	31191921	31192730	+	0	NA	TTS (NM_004960)	TTS (NM_004960)	-9560	NR_102400	100652740		NR_102400	ENSG00000261359	PYCARD-AS1	C16orf98|PYCARDOS	PYCARD antisense RNA 1	ncRNA
203522	chr7	732201	732450	+	0	NA	intron (NR_075098, intron 2 of 12)	intron (NR_075098, intron 2 of 12)	-4649	NM_001164758	5575		NM_002735	ENSG00000188191	PRKAR1B	MASNS|PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding
64305	chr14	23565271	23565630	+	0	NA	intron (NM_001354675, intron 5 of 18)	intron (NM_001354675, intron 5 of 18)	2341	NM_003917	8906		NM_003917	ENSG00000213983	AP1G2	G2AD	adaptor related protein complex 1 subunit gamma 2	protein-coding
232321	chr9	134849201	134849400	+	0	NA	promoter-TSS (NR_039691)	promoter-TSS (NR_039691)	69	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	ncRNA
233288	chr9	137315971	137316130	+	0	NA	intron (NM_017820, intron 19 of 21)	(CC)n|Simple_repeat|Simple_repeat	-13779	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
212373	chr7	127820151	127820450	+	0	NA	intron (NM_014390, intron 11 of 23)	intron (NM_014390, intron 11 of 23)	168106	NM_014390	27044		NM_014390	ENSG00000197157	SND1	TDRD11|TSN|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
187351	chr5	141691651	141692520	+	0	NA	Intergenic	CpG	-9855	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
68449	chr14	81533371	81534400	+	0	NA	promoter-TSS (NM_001244984)	promoter-TSS (NM_001244984)	-24	NM_001244984	6400		NM_005065	ENSG00000071537	SEL1L	Hrd3|PRO1063|SEL1-LIKE|SEL1L1	SEL1L adaptor subunit of SYVN1 ubiquitin ligase	protein-coding
75734	chr15	68252801	68253200	+	0	NA	Intergenic	L1ME3F|LINE|L1	-23272	NM_017882	54982		NM_017882	ENSG00000128973	CLN6	CLN4A|CLN6A|HsT18960|nclf	CLN6 transmembrane ER protein	protein-coding
159462	chr3	14132101	14132530	+	0	NA	intron (NM_024334, intron 4 of 11)	L3|LINE|CR1	7263	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
183833	chr5	86616851	86616950	+	0	NA	Intergenic	Intergenic	-1041	NM_001867	1350		NM_001867	ENSG00000127184	COX7C	-	cytochrome c oxidase subunit 7C	protein-coding
82597	chr16	18820901	18821280	+	0	NA	intron (NM_015092, intron 55 of 62)	intron (NM_015092, intron 55 of 62)	-19541	NM_015161	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
149792	chr21	34936251	34937250	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-48051	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
129001	chr2	64819321	64820750	+	0	NA	Intergenic	Intergenic	43596	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
121949	chr19	48468671	48470600	+	0	NA	intron (NM_017457, intron 1 of 11)	CpG	266	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
119054	chr19	39098671	39099200	+	0	NA	intron (NM_001004318, intron 3 of 12)	CpG	14567	NM_001004318	390928		NM_001004318	ENSG00000183760	ACP7	PAPL|PAPL1	acid phosphatase 7, tartrate resistant (putative)	protein-coding
177008	chr4	105710101	105710400	+	0	NA	promoter-TSS (NM_001031720)	promoter-TSS (NM_001031720)	-563	NM_001031720	79807		NM_024751	ENSG00000138780	GSTCD	-	glutathione S-transferase C-terminal domain containing	protein-coding
169110	chr3	155744451	155745430	+	0	NA	5' UTR (NM_001349252, exon 1 of 25)	5' UTR (NM_001349252, exon 1 of 25)	131	NM_001349252	23007		NM_014996	ENSG00000114805	PLCH1	HPE14|PLC eta 1|PLC-L3|PLCL3	phospholipase C eta 1	protein-coding
129334	chr2	68744871	68745450	+	0	NA	intron (NM_001364821, intron 1 of 10)	MIR|SINE|MIR	9783	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
220407	chr8	100262371	100262730	+	0	NA	intron (NM_183419, intron 7 of 9)	L2a|LINE|L2	39643	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
6374	chr1	27873201	27874480	+	0	NA	intron (NM_001039477, intron 1 of 3)	intron (NM_001039477, intron 1 of 3)	1296	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
234541	chrX	19683821	19684930	+	0	NA	intron (NM_031892, intron 5 of 17)	intron (NM_031892, intron 5 of 17)	-13376	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
186245	chr5	134423571	134423900	+	0	NA	Intergenic	AluJo|SINE|Alu	11312	NR_105044	102546229		NR_105044		LINC02999	-	long intergenic non-protein coding RNA 2999	ncRNA
83572	chr16	28138501	28138700	+	0	NA	intron (NM_001270940, intron 10 of 24)	MLT1L|LTR|ERVL-MaLR	73365	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
5137	chr1	24895771	24896530	+	0	NA	Intergenic	Intergenic	23266	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
219257	chr8	67317251	67317550	+	0	NA	intron (NM_006421, intron 1 of 38)	MER21C|LTR|ERVL	26381	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
180302	chr5	5419251	5419650	+	0	NA	Intergenic	Intergenic	-3227	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
98904	chr17	48593101	48594600	+	0	NA	promoter-TSS (NM_002147)	promoter-TSS (NM_002147)	-109	NM_002147	3215		NM_002147	ENSG00000120075	HOXB5	HHO.C10|HOX2|HOX2A|HU-1|Hox2.1	homeobox B5	protein-coding
206901	chr7	37833201	37833780	+	0	NA	Intergenic	Intergenic	-15107	NM_016616	51314		NM_016616	ENSG00000086288	NME8	CILD6|DNAI8|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2	NME/NM23 family member 8	protein-coding
38274	chr11	40276621	40276700	+	0	NA	intron (NM_001258419, intron 4 of 6)	intron (NM_001258419, intron 4 of 6)	16470	NR_047673	57689		NM_020929	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
153131	chr22	23749221	23750000	+	0	NA	intron (NM_021916, intron 1 of 1)	AluJo|SINE|Alu	1502	NM_021916	7621		NM_021916	ENSG00000187792	ZNF70	Cos17	zinc finger protein 70	protein-coding
42785	chr11	72776451	72777000	+	0	NA	intron (NM_006645, intron 2 of 6)	MIRb|SINE|MIR	-6805	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
56151	chr12	111360921	111361380	+	0	NA	3' UTR (NM_001177997, exon 3 of 3)	3' UTR (NM_001177997, exon 3 of 3)	7945	NM_001177996	144717		NM_144671	ENSG00000198324	PHETA1	FAM109A|IPIP27A|SES1	PH domain containing endocytic trafficking adaptor 1	protein-coding
90217	chr17	499871	500680	+	0	NA	Intergenic	Intergenic	-54335	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
161093	chr3	38148421	38148680	+	0	NA	Intergenic	L1MD2|LINE|L1	8799	NR_164663	4615		NM_002468	ENSG00000172936	MYD88	IMD68|MYD88D|WM1	MYD88 innate immune signal transduction adaptor	protein-coding
66422	chr14	61521501	61521800	+	0	NA	intron (NM_006255, intron 10 of 13)	AluJb|SINE|Alu	48544	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
11118	chr1	86395541	86397500	+	0	NA	promoter-TSS (NM_001007022)	promoter-TSS (NM_001007022)	-178	NM_001184765	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
221199	chr8	120757421	120757680	+	0	NA	intron (NM_021021, intron 1 of 6)	L3|LINE|CR1	-3703	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
100792	chr17	64023601	64023800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3066	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
29125	chr10	68470501	68470700	+	0	NA	intron (NR_102264, intron 2 of 21)	FRAM|SINE|Alu	1373	NM_001080449	1763		NM_001080449	ENSG00000138346	DNA2	DNA2L|hDNA2	DNA replication helicase/nuclease 2	protein-coding
59876	chr13	30671551	30672130	+	0	NA	Intergenic	L2c|LINE|L2	37625	NM_001321534	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
12386	chr1	101275751	101276500	+	0	NA	Intergenic	L1MC|LINE|L1	39106	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
143130	chr20	23607671	23608030	+	0	NA	Intergenic	Intergenic	-1933	NM_001008693	128822		NM_001008693	ENSG00000173335	CST9	CLM|CTES7A	cystatin 9	protein-coding
123968	chr19	55410471	55410630	+	0	NA	Intergenic	L2a|LINE|L2	-2762	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
17370	chr1	156533151	156533450	+	0	NA	intron (NM_178229, intron 31 of 37)	intron (NM_178229, intron 31 of 37)	-32525	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
199187	chr6	111771801	111772330	+	0	NA	intron (NM_002037, intron 3 of 13)	MIRb|SINE|MIR	-12148	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
206651	chr7	36203271	36203430	+	0	NA	intron (NM_030636, intron 2 of 7)	intron (NM_030636, intron 2 of 7)	50096	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
159575	chr3	14989071	14989630	+	0	NA	intron (NM_003298, intron 1 of 14)	intron (NM_003298, intron 1 of 14)	-40909	NR_046251	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
129280	chr2	68425601	68426200	+	0	NA	Intergenic	Intergenic	41394	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
11811	chr1	92833651	92834580	+	0	NA	intron (NR_146333, intron 3 of 7)	intron (NR_146333, intron 3 of 7)	2075	NM_000969	6125		NM_000969	ENSG00000122406	RPL5	L5|MSTP030|PPP1R135|uL18	ribosomal protein L5	protein-coding
15819	chr1	151304271	151304630	+	0	NA	intron (NM_001369628, intron 5 of 12)	AluSq2|SINE|Alu	22151	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
56858	chr12	120260151	120260450	+	0	NA	intron (NM_001080855, intron 1 of 11)	AluSp|SINE|Alu	5430	NM_002859	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
221042	chr8	116743751	116743850	+	0	NA	intron (NM_003756, intron 1 of 7)	(AC)n|Simple_repeat|Simple_repeat	12023	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
72153	chr15	29090501	29091100	+	0	NA	intron (NM_001353793, intron 5 of 12).2	intron (NM_001353793, intron 5 of 12).2	20142	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
144805	chr20	36720671	36720830	+	0	NA	intron (NR_038370, intron 2 of 13)	intron (NR_038370, intron 2 of 13)	25340	NM_022477	57446		NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
146944	chr20	52103551	52104680	+	0	NA	intron (NM_199427, intron 5 of 8)	intron (NM_199427, intron 5 of 8)	1369	NM_001319146	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
96947	chr17	42187051	42187430	+	0	NA	Intergenic	AluJr|SINE|Alu	-1788	NM_001524	3060		NM_001524	ENSG00000161610	HCRT	NRCLP1|OX|PPOX	hypocretin neuropeptide precursor	protein-coding
178677	chr4	152515851	152516330	+	0	NA	intron (NM_001349798, intron 2 of 13)	MLT1E1A|LTR|ERVL-MaLR	18943	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
189498	chr5	173234701	173235430	+	0	NA	exon (NM_001166176, exon 1 of 2)	exon (NM_001166176, exon 1 of 2)	141	NM_001166176	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
212097	chr7	116142601	116143250	+	0	NA	Intergenic	Intergenic	-67614	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
181304	chr5	40220671	40221230	+	0	NA	Intergenic	Intergenic	168659	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
16721	chr1	155246521	155246980	+	0	NA	TTS (NM_001267608)	TTS (NM_001267608)	-2123	NM_001005742	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
203726	chr7	1115971	1116330	+	0	NA	intron (NM_001350970, intron 2 of 2)	CpG	22097	NM_001318252	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
119830	chr19	41360151	41361000	+	0	NA	intron (NM_030578, intron 2 of 3)	AluSq2|SINE|Alu	-3372	NM_001369864	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
181031	chr5	35881071	35881230	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	24259	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
53200	chr12	62262171	62262400	+	0	NA	intron (NM_001351164, intron 1 of 21)	intron (NM_001351164, intron 1 of 21)	1881	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
151261	chr21	45356271	45356430	+	0	NA	Intergenic	LTR50|LTR|ERVL	-14360	NR_103811	388830		NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
209016	chr7	74307071	74307430	+	0	NA	intron (NM_032421, intron 1 of 15)	intron (NM_032421, intron 1 of 15)	17843	NM_003388	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
47271	chr12	1587921	1588450	+	0	NA	intron (NM_152441, intron 1 of 1)	intron (NM_152441, intron 1 of 1)	6396	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
187800	chr5	146313251	146313350	+	0	NA	Intergenic	Intergenic	-25539	NM_002700	5459		NM_002700	ENSG00000091010	POU4F3	BRN3C|DFNA15|DFNA42|DFNA52	POU class 4 homeobox 3	protein-coding
198370	chr6	105458151	105458600	+	0	NA	Intergenic	Intergenic	-55293	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
101794	chr17	73227221	73227930	+	0	NA	intron (NM_032837, intron 1 of 2)	intron (NM_032837, intron 1 of 2)	142	NM_001289412	84923		NM_032837	ENSG00000133193	VCF1	FAM104A	VCP nuclear cofactor family member 1	protein-coding
141260	chr2	239928521	239928780	+	0	NA	intron (NR_136158, intron 7 of 10)	intron (NR_136158, intron 7 of 10)	14444	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
149596	chr21	33308951	33309350	+	0	NA	Intergenic	Intergenic	-15245	NM_001384504	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
238793	chrX	154382521	154383680	+	0	NA	Intergenic	Intergenic	3805	NM_000117	2010		NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
198845	chr6	109362621	109362950	+	0	NA	Intergenic	LTR41|LTR|ERVL	18954	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
37699	chr11	28332501	28332730	+	0	NA	3' UTR (NM_152636, exon 8 of 8)	3' UTR (NM_152636, exon 8 of 8)	144933	NR_107035	102466876		NR_107035	ENSG00000273912	MIR8068	hsa-mir-8068	microRNA 8068	ncRNA
117949	chr19	33239521	33239980	+	0	NA	Intergenic	AluJr|SINE|Alu	-13900	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
220044	chr8	92231401	92231600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-128115	NM_175634	862		NM_004349	ENSG00000079102	RUNX1T1	AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	RUNX1 partner transcriptional co-repressor 1	protein-coding
235810	chrX	49199351	49200530	+	0	NA	intron (NR_046649, intron 1 of 1)	CpG	253	NM_003179	6855		NM_003179	ENSG00000102003	SYP	MRX96|MRXSYP|XLID96	synaptophysin	protein-coding
78950	chr15	101288821	101289650	+	0	NA	intron (NR_135506, intron 1 of 5)	intron (NR_135506, intron 1 of 5)	6013	NR_135506	6627		NM_003090	ENSG00000131876	SNRPA1	Lea1|U2A'	small nuclear ribonucleoprotein polypeptide A'	protein-coding
169228	chr3	157132271	157132750	+	0	NA	Intergenic	Intergenic	-9508	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
41185	chr11	65631451	65631850	+	0	NA	intron (NM_032223, intron 27 of 34)	AluSx1|SINE|Alu	-4660	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
89496	chr16	89147171	89147700	+	0	NA	intron (NR_147928, intron 11 of 11)	intron (NR_147928, intron 11 of 11)	10887	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
120323	chr19	43526201	43526500	+	0	NA	intron (NM_014297, intron 2 of 6)	intron (NM_014297, intron 2 of 6)	851	NM_001320867	23474		NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1 persulfide dioxygenase	protein-coding
154660	chr22	36348501	36349600	+	0	NA	exon (NM_002473, exon 2 of 41)	exon (NM_002473, exon 2 of 41)	38917	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
12718	chr1	109508171	109508330	+	0	NA	exon (NM_020703, exon 2 of 2)	exon (NM_020703, exon 2 of 2)	1477	NM_020703	57463		NM_020703	ENSG00000181754	AMIGO1	ALI2|AMIGO|AMIGO-1	adhesion molecule with Ig like domain 1	protein-coding
7484	chr1	33179121	33179580	+	0	NA	intron (NM_018207, intron 1 of 4)	intron (NM_018207, intron 1 of 4)	2693	NM_018207	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
161377	chr3	41116921	41117950	+	0	NA	Intergenic	Intergenic	-82070	NM_001330729	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
16883	chr1	155850201	155850600	+	0	NA	intron (NM_001282861, intron 2 of 20)	intron (NM_001282861, intron 2 of 20)	6814	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
13507	chr1	114743351	114743780	+	0	NA	intron (NM_001242891, intron 2 of 20)	intron (NM_001242891, intron 2 of 20)	14419	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
217199	chr8	26326951	26327850	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	34184	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
168938	chr3	152364251	152364580	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-23425	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
136398	chr2	176134871	176135330	+	0	NA	intron (NR_038435, intron 2 of 2)	intron (NR_038435, intron 2 of 2)	-1512	NR_148241	401021		NR_148241		LOC401021	-	uncharacterized LOC401021	ncRNA
171779	chr4	211221	211480	+	0	NA	Intergenic	LTR77|LTR|ERV1	-1250	NR_027481	642280		NM_001039758	ENSG00000290382	ZNF876P	-	zinc finger protein 876, pseudogene	pseudo
83776	chr16	28738751	28738850	+	0	NA	Intergenic	Intergenic	-13635	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
87574	chr16	72502271	72502430	+	0	NA	intron (NR_159371, intron 3 of 5)	intron (NR_159371, intron 3 of 5)	162620	NR_126330	101927957		NR_126330	ENSG00000261008	LINC01572	-	long intergenic non-protein coding RNA 1572	ncRNA
190140	chr5	178104471	178105230	+	0	NA	Intergenic	Intergenic	-8682	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
122025	chr19	48618771	48621080	+	0	NA	promoter-TSS (NM_000979)	promoter-TSS (NM_000979)	419	NM_001204158	56848		NM_020126	ENSG00000063176	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding
120247	chr19	42401301	42402900	+	0	NA	intron (NM_005357, intron 9 of 9)	CpG	4952	NR_073180	100996307		NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
17529	chr1	156775851	156776480	+	0	NA	intron (NM_005973, intron 1 of 6)	AluJr4|SINE|Alu	8630	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
102410	chr17	75619771	75620500	+	0	NA	intron (NM_001309242, intron 46 of 62)	intron (NM_001309242, intron 46 of 62)	-13299	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
126916	chr2	32629071	32629230	+	0	NA	intron (NM_017735, intron 1 of 19)	AluSq|SINE|Alu	1100	NM_017735	55622		NM_017735	ENSG00000018699	TTC27	-	tetratricopeptide repeat domain 27	protein-coding
100596	chr17	63441701	63441900	+	0	NA	promoter-TSS (NM_001017917)	promoter-TSS (NM_001017917)	-973	NM_001017917	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
152214	chr22	20133301	20133500	+	0	NA	intron (NM_001185024, intron 1 of 10)	intron (NM_001185024, intron 1 of 10)	1596	NM_013373	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
112294	chr19	5840251	5840550	+	0	NA	Intergenic	AluJo|SINE|Alu	-1608	NM_001381956	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
154589	chr22	36278701	36278900	+	0	NA	Intergenic	AluSx1|SINE|Alu	8107	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
217042	chr8	23262251	23262350	+	0	NA	TTS (NM_001317899)	TTS (NM_001317899)	15659	NM_001317899	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
5865	chr1	26742171	26742530	+	0	NA	intron (NM_139135, intron 4 of 19)	intron (NM_139135, intron 4 of 19)	-44704	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
163891	chr3	52516171	52516750	+	0	NA	intron (NM_015136, intron 39 of 68)	intron (NM_015136, intron 39 of 68)	17397	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
71753	chr15	20959551	20959650	+	0	NA	intron (NR_040094, intron 2 of 4)	intron (NR_040094, intron 2 of 4)	19162	NR_040094	348120		NR_040094	ENSG00000258710	LINC01193	CT60	long intergenic non-protein coding RNA 1193	ncRNA
22451	chr1	220881251	220881550	+	0	NA	intron (NM_021958, intron 2 of 3)	CpG	-1260	NR_046901	100873924		NR_046901	ENSG00000257551	HLX-AS1	-	HLX antisense RNA 1	ncRNA
79371	chr16	640971	643380	+	0	NA	promoter-TSS (NR_138611)	promoter-TSS (NR_138611)	-79	NR_138609	84331		NM_032371	ENSG00000172366	MCRIP2	C16orf14|FAM195A|c349E10.1	MAPK regulated corepressor interacting protein 2	protein-coding
33163	chr10	112721021	112721330	+	0	NA	intron (NM_001365713, intron 8 of 8)	MIR|SINE|MIR	87005	NR_036177	100422909		NR_036177	ENSG00000264763	MIR4295	-	microRNA 4295	ncRNA
147103	chr20	53881051	53881430	+	0	NA	Intergenic	AluY|SINE|Alu	-5531	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
144661	chr20	36154201	36155400	+	0	NA	promoter-TSS (NM_012156)	promoter-TSS (NM_012156)	60	NM_012156	2036		NM_012156	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1 like 1	protein-coding
238694	chrX	154070301	154070700	+	0	NA	intron (NM_001316337, intron 2 of 4)	Tigger1|DNA|TcMar-Tigger	26469	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
239305	chrY	15896821	15896900	+	0	NA	Intergenic	AluYe5|SINE|Alu	-1092827	NR_046504	100874056		NR_046504	ENSG00000228787	NLGN4Y-AS1	NLGN4Y-AS|NLGN4YAS	NLGN4Y antisense RNA 1	ncRNA
79902	chr16	1613991	1615230	+	0	NA	intron (NM_020825, intron 1 of 20)	CpG-9024	2250	NM_020825	57585		NM_020825	ENSG00000007545	CRAMP1	CRAMP1L|HN1L|TCE4	cramped chromatin regulator homolog 1	protein-coding
45012	chr11	117009171	117009580	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJo|SINE|Alu	89053	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
101693	chr17	68455901	68456150	+	0	NA	intron (NR_135470, intron 1 of 12)	MER112|DNA|hAT-Charlie	1471	NM_017983	55062		NM_017983	ENSG00000070540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
5567	chr1	25919401	25919600	+	0	NA	Intergenic	AluSz6|SINE|Alu	-12623	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
184789	chr5	111083301	111083500	+	0	NA	Intergenic	Intergenic	-8948	NM_139281	134430		NM_139281	ENSG00000134987	WDR36	GLC1G|TA-WDRP|TAWDRP|UTP21	WD repeat domain 36	protein-coding
52193	chr12	54353871	54354230	+	0	NA	intron (NR_120487, intron 1 of 3)	intron (NR_120487, intron 1 of 3)	359	NR_120486	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
214118	chr7	144192101	144192530	+	0	NA	intron (NM_001368318, intron 1 of 1)	intron (NM_001368318, intron 1 of 1)	-3006	NR_126022	101928605		NR_126022		ARHGEF35-AS1	-	ARHGEF35 antisense RNA 1	ncRNA
76898	chr15	77992251	77993300	+	0	NA	TTS (NR_026998)	TTS (NR_026998)	1450	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
161520	chr3	42598551	42598650	+	0	NA	intron (NM_001201572, intron 1 of 6)	AluSx1|SINE|Alu	-2086	NM_005385	4820		NM_005385	ENSG00000114857	NKTR	CypNK|p104	natural killer cell triggering receptor	protein-coding
48394	chr12	9642801	9643730	+	0	NA	intron (NR_046449, intron 1 of 3)	intron (NR_046449, intron 1 of 3)	397	NR_046449	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
26738	chr10	22689101	22690150	+	0	NA	intron (NM_005028, intron 1 of 9)	MER2|DNA|TcMar-Tigger	24483	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
221177	chr8	120452651	120453130	+	0	NA	intron (NM_022045, intron 4 of 21)	intron (NM_022045, intron 4 of 21)	7471	NM_022045	27085		NM_022045	ENSG00000172167	MTBP	MDM2BP	MDM2 binding protein	protein-coding
116131	chr19	17332501	17333100	+	0	NA	intron (NM_020959, intron 5 of 17)	intron (NM_020959, intron 5 of 17)	2055	NM_020959	57719		NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
972	chr1	1795021	1795630	+	0	NA	intron (NM_001282539, intron 6 of 10)	intron (NM_001282539, intron 6 of 10)	-15294	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
40682	chr11	64766951	64767050	+	0	NA	exon (NM_001346363, exon 12 of 13)	exon (NM_001346363, exon 12 of 13)	-6285	NM_001164716	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
168074	chr3	138160801	138161000	+	0	NA	TTS (NM_016216)	TTS (NM_016216)	14021	NM_016216	51163		NM_016216	ENSG00000138231	DBR1	XGIP	debranching RNA lariats 1	protein-coding
120029	chr19	41953021	41953750	+	0	NA	Intergenic	AluY|SINE|Alu	5936	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
135834	chr2	170710901	170711130	+	0	NA	intron (NR_110185, intron 5 of 5)	intron (NR_110185, intron 5 of 5)	3552	NR_027433	440925		NM_001013712	ENSG00000222033	LINC01124	-	long intergenic non-protein coding RNA 1124	ncRNA
136366	chr2	176097371	176097930	+	0	NA	Intergenic	CpG	-2145	NM_021193	3238		NM_021193	ENSG00000170178	HOXD12	HOX4H	homeobox D12	protein-coding
217924	chr8	38072551	38072650	+	0	NA	Intergenic	Intergenic	-32893	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
26569	chr10	21737001	21737400	+	0	NA	intron (NM_004641, intron 22 of 23)	intron (NM_004641, intron 22 of 23)	202968	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
150306	chr21	41999701	42000450	+	0	NA	intron (NM_020727, intron 1 of 1)	L2|LINE|L2	-9119	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
88362	chr16	84583551	84584050	+	0	NA	intron (NM_021149, intron 3 of 3)	intron (NM_021149, intron 3 of 3)	34278	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
76191	chr15	73464601	73464800	+	0	NA	intron (NM_001042367, intron 1 of 5)	intron (NM_001042367, intron 1 of 5)	21536	NM_001348772	283677		NM_001042367	ENSG00000183324	REC114	C15orf60|CT147|OOMD10|OZEMA10	REC114 meiotic recombination protein	protein-coding
100568	chr17	62792671	62792830	+	0	NA	intron (NM_001288779, intron 2 of 11)	(CAC)n|Simple_repeat|Simple_repeat	13890	NM_001100875	162333		NM_152598	ENSG00000173838	MARCHF10	MARCH-X|MARCH10|RNF190	membrane associated ring-CH-type finger 10	protein-coding
75970	chr15	70494701	70495830	+	0	NA	Intergenic	Intergenic	10663	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
117588	chr19	21605651	21605750	+	0	NA	Intergenic	AluY|SINE|Alu	-43968	NR_144514	400682		NR_144514		LOC400682	-	zinc finger protein 100-like	pseudo
230772	chr9	128912351	128912680	+	0	NA	intron (NM_019594, intron 3 of 3)	intron (NM_019594, intron 3 of 3)	-8467	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
51438	chr12	52034471	52035230	+	0	NA	intron (NM_001202233, intron 1 of 7)	intron (NM_001202233, intron 1 of 7)	-2865	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
166732	chr3	121718251	121719030	+	0	NA	intron (NM_001366283, intron 6 of 20)	intron (NM_001366283, intron 6 of 20)	31101	NM_001366284	2804		NM_004487	ENSG00000173230	GOLGB1	GCP|GCP372|GOLIM1	golgin B1	protein-coding
202434	chr6	157979501	157980180	+	0	NA	Intergenic	Intergenic	-2023	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
227621	chr9	92782001	92782200	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-17267	NM_001003800	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
220922	chr8	107496921	107497580	+	0	NA	intron (NM_001199859, intron 1 of 8)	intron (NM_001199859, intron 1 of 8)	668	NM_001199859	284		NM_001146	ENSG00000154188	ANGPT1	AGP1|AGPT|AGPT-1|ANG1|HAE5	angiopoietin 1	protein-coding
94418	chr17	29115801	29116330	+	0	NA	intron (NM_203318, intron 11 of 40)	intron (NM_203318, intron 11 of 40)	24324	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
31233	chr10	91810321	91810850	+	0	NA	intron (NM_025235, intron 1 of 26)	AluY|SINE|Alu	12159	NM_025235	80351		NM_025235	ENSG00000107854	TNKS2	ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6	tankyrase 2	protein-coding
189466	chr5	173059271	173059650	+	0	NA	intron (NM_001168393, intron 1 of 3)	AluSq2|SINE|Alu	3108	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
1680	chr1	4016871	4017330	+	0	NA	Intergenic	L1ME5|LINE|L1	-68120	NR_147024	105376672		NR_147024	ENSG00000226374	LINC01345	-	long intergenic non-protein coding RNA 1345	ncRNA
92975	chr17	17118051	17118350	+	0	NA	intron (NM_015134, intron 3 of 22)	intron (NM_015134, intron 3 of 22)	75743	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
176980	chr4	104938451	104938950	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-207175	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
219814	chr8	81574801	81575200	+	0	NA	Intergenic	L1PB1|LINE|L1	-43610	NM_001105281	646486		NM_001105281	ENSG00000197416	FABP12	-	fatty acid binding protein 12	protein-coding
32205	chr10	101777671	101778500	+	0	NA	intron (NM_001206389, intron 1 of 4)	L2b|LINE|L2	-1971	NM_033163	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
90709	chr17	1824771	1824930	+	0	NA	intron (NM_052928, intron 2 of 10)	AluSz|SINE|Alu	5052	NM_052928	114826		NM_052928	ENSG00000186532	SMYD4	ZMYND21	SET and MYND domain containing 4	protein-coding
188007	chr5	149542871	149543650	+	0	NA	intron (NM_001892, intron 2 of 9)	intron (NM_001892, intron 2 of 9)	7105	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
4213	chr1	19458521	19459030	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	25520	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
198527	chr6	106532271	106532630	+	0	NA	intron (NM_001371242, intron 8 of 21)	L1MA6|LINE|L1	20595	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
56912	chr12	120390001	120390200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-20936	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
149568	chr21	33234571	33235600	+	0	NA	intron (NM_001385055, intron 1 of 9)	MER41B|LTR|ERV1	5147	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
93294	chr17	18147071	18147630	+	0	NA	intron (NM_016239, intron 29 of 64)	intron (NM_016239, intron 29 of 64)	-29789	NR_164159	105371566		NR_164159		LOC105371566	-	uncharacterized LOC105371566	ncRNA
207208	chr7	43645521	43646080	+	0	NA	TTS (NM_001321202)	TTS (NM_001321202)	62692	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
27761	chr10	35240001	35240350	+	0	NA	Intergenic	Intergenic	-6850	NM_181698	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
105535	chr17	83135651	83135950	+	0	NA	Intergenic	Intergenic	54654	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
146022	chr20	46971351	46971530	+	0	NA	intron (NM_172110, intron 1 of 13)	MLT1J|LTR|ERVL-MaLR	76597	NM_005244	2139		NM_005244	ENSG00000064655	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding
142307	chr20	3420071	3420730	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-12738	NM_001009984	25943		NM_001009984	ENSG00000088854	DNAAF9	C20orf194	dynein axonemal assembly factor 9	protein-coding
184617	chr5	106865321	106865580	+	0	NA	intron (NR_104671, intron 2 of 3)	intron (NR_104671, intron 2 of 3)	145564	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
15484	chr1	150371351	150371780	+	0	NA	intron (NM_015203, intron 1 of 10)	AluYj4|SINE|Alu	7454	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
154948	chr22	37240901	37241900	+	0	NA	intron (NM_002872, intron 2 of 6)	intron (NM_002872, intron 2 of 6)	2869	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
105902	chr18	3356521	3356780	+	0	NA	Intergenic	L1MA9|LINE|L1	-6091	NR_146506	105371964		NR_146506	ENSG00000259256	LINC01895	-	long intergenic non-protein coding RNA 1895	ncRNA
139533	chr2	224582751	224583230	+	0	NA	intron (NM_003590, intron 1 of 15)	intron (NM_003590, intron 1 of 15)	2373	NM_003590	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
115885	chr19	16576471	16577480	+	0	NA	exon (NM_004831, exon 3 of 3)	exon (NM_004831, exon 3 of 3)	-4560	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
136730	chr2	181224601	181225110	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	80797	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
66920	chr14	65391721	65391800	+	0	NA	Intergenic	AluSz|SINE|Alu	-18832	NR_038167	2530		NM_004480	ENSG00000033170	FUT8	CDGF|CDGF1	fucosyltransferase 8	protein-coding
94850	chr17	31498721	31498980	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	10742	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
9894	chr1	54372371	54372530	+	0	NA	intron (NM_145716, intron 4 of 17)	L2c|LINE|L2	33944	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
59366	chr13	24682951	24683050	+	0	NA	intron (NM_001185085, intron 2 of 22)	AluSq2|SINE|Alu	2589	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
197071	chr6	53741471	53741730	+	0	NA	Intergenic	MLT1H2-int|LTR|ERVL-MaLR	-53405	NM_018214	55227		NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
84688	chr16	30776871	30777030	+	0	NA	TTS (NM_001286572)	TTS (NM_001286572)	10255	NM_001080417	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
123947	chr19	55388751	55389420	+	0	NA	TTS (NR_106863)	TTS (NR_106863)	904	NR_106863	102465483		NR_106863	ENSG00000284029	MIR6805	hsa-mir-6805	microRNA 6805	ncRNA
188834	chr5	159104171	159104530	+	0	NA	intron (NR_109890, intron 1 of 2)	intron (NR_109890, intron 1 of 2)	3867	NR_109890	101927740		NR_109890	ENSG00000245812	LINC02202	-	long intergenic non-protein coding RNA 2202	ncRNA
30959	chr10	87826771	87827180	+	0	NA	intron (NR_028492, intron 2 of 3)	intron (NR_028492, intron 2 of 3)	8662	NR_028492	142913		NM_152427	ENSG00000290782	CFL1P1	CFLP1	cofilin 1 pseudogene 1	pseudo
152800	chr22	21840651	21841030	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSx3|SINE|Alu	26805	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
39331	chr11	59171551	59173580	+	0	NA	5' UTR (NM_015177, exon 1 of 9)	5' UTR (NM_015177, exon 1 of 9)	433	NM_015177	23220		NM_015177	ENSG00000110042	DTX4	RNF155	deltex E3 ubiquitin ligase 4	protein-coding
108218	chr18	63165121	63165480	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	154469	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
17860	chr1	159931271	159931950	+	0	NA	intron (NM_001135050, intron 11 of 20)	intron (NM_001135050, intron 11 of 20)	-6103	NM_003564	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
99232	chr17	49675601	49676700	+	0	NA	intron (NM_003563, intron 1 of 10)	intron (NM_003563, intron 1 of 10)	1947	NM_001007228	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
105652	chr18	2547421	2547800	+	0	NA	intron (NM_022840, intron 5 of 8)	intron (NM_022840, intron 5 of 8)	23895	NM_022840	64863		NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase 4, N6-adenosine	protein-coding
142801	chr20	13788121	13788430	+	0	NA	intron (NM_024120, intron 2 of 10)	intron (NM_024120, intron 2 of 10)	3247	NR_147982	79133		NM_024120	ENSG00000101247	NDUFAF5	C20orf7|MC1DN16|bA526K24.2|dJ842G6.1	NADH:ubiquinone oxidoreductase complex assembly factor 5	protein-coding
99454	chr17	50141271	50141430	+	0	NA	exon (NM_032595, exon 4 of 10)	exon (NM_032595, exon 4 of 10)	9327	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
5186	chr1	24948821	24949080	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	16060	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
171746	chr3	198099791	198100400	+	0	NA	Intergenic	Intergenic	-19424	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
235204	chrX	41350371	41351800	+	0	NA	TTS (NM_001363819)	TTS (NM_001363819)	16919	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
101288	chr17	66402451	66403200	+	0	NA	intron (NR_110822, intron 3 of 3)	intron (NR_110822, intron 3 of 3)	14029	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
131522	chr2	96558701	96559150	+	0	NA	Intergenic	Intergenic	21046	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
17401	chr1	156627121	156628180	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-5722	NR_135113	101928177		NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
89285	chr16	88692991	88694580	+	0	NA	Intergenic	Intergenic	-7278	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
17895	chr1	160095551	160096330	+	0	NA	intron (NM_052868, intron 1 of 6)	intron (NM_052868, intron 1 of 6)	2679	NM_052868	93185		NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
178858	chr4	154416271	154416430	+	0	NA	intron (NM_001142552, intron 1 of 7).2	intron (NM_001142552, intron 1 of 7).2	75449	NM_001142552	54798		NM_017639	ENSG00000197410	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
113125	chr19	8309501	8309780	+	0	NA	intron (NR_135539, intron 4 of 4)	L2b|LINE|L2	-1282	NM_001165895	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
175424	chr4	70998851	70999530	+	0	NA	intron (NM_000788, intron 2 of 6)	L1PA7|LINE|L1	5541	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
117976	chr19	33375471	33375630	+	0	NA	intron (NM_001252296, intron 1 of 1)	intron (NM_001252296, intron 1 of 1)	1026	NM_001252296	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
42800	chr11	72793401	72794550	+	0	NA	promoter-TSS (NM_006645)	promoter-TSS (NM_006645)	-270	NM_006645	10809		NM_006645	ENSG00000214530	STARD10	CGI-52|NY-CO-28|PCTP2|SDCCAG28	StAR related lipid transfer domain containing 10	protein-coding
60299	chr13	40639471	40639700	+	0	NA	intron (NM_002015, intron 1 of 2)	MER20|DNA|hAT-Charlie	27056	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
215513	chr7	158706151	158706250	+	0	NA	Intergenic	Intergenic	-1396	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
135007	chr2	153478351	153479080	+	0	NA	promoter-TSS (NM_019845)	promoter-TSS (NM_019845)	47	NM_019845	56475		NM_019845	ENSG00000177519	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator homolog	protein-coding
34059	chr10	124790571	124790830	+	0	NA	intron (NM_212554, intron 1 of 6)	intron (NM_212554, intron 1 of 6)	1187	NM_212554	399818		NM_212554	ENSG00000203791	EEF1AKMT2	C10orf138|Efm4|METTL10	EEF1A lysine methyltransferase 2	protein-coding
187214	chr5	140699901	140700950	+	0	NA	promoter-TSS (NM_144723)	promoter-TSS (NM_144723)	-22	NM_144723	153527		NM_144723	ENSG00000146007	ZMAT2	Ptg-12|Snu23	zinc finger matrin-type 2	protein-coding
205009	chr7	6478871	6479650	+	0	NA	intron (NM_006854, intron 1 of 4)	AluJb|SINE|Alu	4892	NM_001100603	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
16130	chr1	153658351	153659750	+	0	NA	intron (NR_052019, intron 1 of 2)	intron (NR_052019, intron 1 of 2)	347	NM_012437	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
29236	chr10	69091721	69092480	+	0	NA	intron (NM_001321054, intron 1 of 1)	intron (NM_001321054, intron 1 of 1)	3997	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
10793	chr1	77677271	77677430	+	0	NA	intron (NR_164775, intron 1 of 14)	AluSx|SINE|Alu	5308	NM_001376155	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
142665	chr20	5919051	5919600	+	0	NA	intron (NM_001819, intron 3 of 4)	intron (NM_001819, intron 3 of 4)	7815	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
9363	chr1	47224801	47225000	+	0	NA	intron (NM_001290406, intron 1 of 2)	intron (NM_001290406, intron 1 of 2)	6815	NM_001287347	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
107838	chr18	54263071	54263600	+	0	NA	Intergenic	Intergenic	-6144	NR_147257	11201		NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
223197	chr8	143577671	143578900	+	0	NA	promoter-TSS (NM_145201)	promoter-TSS (NM_145201)	45	NM_145201	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
42461	chr11	69637921	69638500	+	0	NA	Intergenic	CpG	-2946	NM_053056	595		NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
56657	chr12	119809101	119809300	+	0	NA	intron (NM_007174, intron 9 of 46)	intron (NM_007174, intron 9 of 46)	68120	NM_001206999	11113		NM_007174	ENSG00000122966	CIT	CITK|CRIK|MCPH17|STK21	citron rho-interacting serine/threonine kinase	protein-coding
180781	chr5	32177571	32177730	+	0	NA	Intergenic	Intergenic	-3331	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
170544	chr3	186778571	186778730	+	0	NA	Intergenic	Intergenic	-4927	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
211508	chr7	105270301	105270700	+	0	NA	intron (NM_001350742, intron 2 of 16)	AluSq2|SINE|Alu	-1423	NM_001350744	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
124021	chr19	55479801	55480230	+	0	NA	intron (NM_033113, intron 2 of 2)	L2a|LINE|L2	3398	NM_033113	89887		NM_033113	ENSG00000197483	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
67506	chr14	70954851	70955180	+	0	NA	intron (NM_014982, intron 2 of 35)	intron (NM_014982, intron 2 of 35)	47556	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
112788	chr19	7479151	7479930	+	0	NA	intron (NM_080662, intron 3 of 4)	MER5A|DNA|hAT-Charlie	9495	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
63704	chr14	21106571	21107430	+	0	NA	Intergenic	Intergenic	-2296	NM_001102454	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
11242	chr1	88973471	88974080	+	0	NA	intron (NM_001349447, intron 2 of 13)	intron (NM_001349447, intron 2 of 13)	18854	NM_001162536	494115		NM_019610	ENSG00000213516	RBMXL1	RBM1	RBMX like 1	protein-coding
83256	chr16	23920701	23920900	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	84817	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
1037	chr1	1878951	1879430	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	11897	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
150581	chr21	43176551	43178030	+	0	NA	Intergenic	Intergenic	7054	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
236613	chrX	74411821	74412080	+	0	NA	Intergenic	MIR|SINE|MIR	-9543	NM_006517	6567		NM_006517	ENSG00000147100	SLC16A2	AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT	solute carrier family 16 member 2	protein-coding
208388	chr7	66681401	66682750	+	0	NA	promoter-TSS (NM_001367745)	promoter-TSS (NM_001367745)	-91	NM_001367740	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
223222	chr8	143600621	143601630	+	0	NA	3' UTR (NM_032862, exon 1 of 1)	3' UTR (NM_032862, exon 1 of 1)	3294	NM_032862	84948		NM_032862	ENSG00000179886	TIGD5	-	tigger transposable element derived 5	protein-coding
22110	chr1	211678401	211678600	+	0	NA	intron (NR_148994, intron 2 of 3)	AluSx|SINE|Alu	2738	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
103673	chr17	78791771	78791930	+	0	NA	intron (NM_001385179, intron 20 of 20)	AluJr|SINE|Alu	-9508	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
205303	chr7	11831701	11832130	+	0	NA	exon (NM_015204, exon 1 of 27)	exon (NM_015204, exon 1 of 27)	283	NM_015204	221981		NM_015204	ENSG00000005108	THSD7A	-	thrombospondin type 1 domain containing 7A	protein-coding
161871	chr3	45890471	45890900	+	0	NA	intron (NM_006641, intron 1 of 1)	intron (NM_006641, intron 1 of 1)	4142	NM_006641	10803		NM_006641	ENSG00000173585	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	C-C motif chemokine receptor 9	protein-coding
140669	chr2	234024671	234024830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-25952	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
71086	chr14	104866971	104867300	+	0	NA	intron (NM_015005, intron 1 of 17)	MER45R|DNA|hAT-Tip100	1821	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
50118	chr12	44969071	44969230	+	0	NA	Intergenic	Intergenic	-55222	NM_001145110	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
70788	chr14	103527271	103528200	+	0	NA	Intergenic	Intergenic	-1461	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
219200	chr8	66650851	66651150	+	0	NA	intron (NM_025054, intron 2 of 2)	AluSp|SINE|Alu	16231	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
114642	chr19	13011251	13011750	+	0	NA	intron (NM_001365902, intron 1 of 10)	CpG	-12472	NM_001271044	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
173799	chr4	17651451	17652350	+	0	NA	intron (NM_015688, intron 11 of 17)	intron (NM_015688, intron 11 of 17)	37259	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
106684	chr18	23235921	23236330	+	0	NA	intron (NM_138375, intron 6 of 9)	intron (NM_138375, intron 6 of 9)	80300	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
158109	chr22	50027451	50028200	+	0	NA	intron (NM_001350317, intron 13 of 13)	intron (NM_001350317, intron 13 of 13)	-15060	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
46559	chr11	128487371	128487530	+	0	NA	intron (NM_001143820, intron 5 of 9)	intron (NM_001143820, intron 5 of 9)	34860	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
201318	chr6	144377301	144377730	+	0	NA	intron (NM_007124, intron 1 of 73)	MamRTE1|LINE|RTE-BovB	-28140	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
31315	chr10	92691721	92692480	+	0	NA	intron (NM_002729, intron 1 of 3)	intron (NM_002729, intron 1 of 3)	2145	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
61077	chr13	48319701	48321300	+	0	NA	intron (NM_000321, intron 2 of 26)	intron (NM_000321, intron 2 of 26)	16749	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
128740	chr2	61898871	61899100	+	0	NA	intron (NM_001321781, intron 1 of 2)	intron (NM_001321781, intron 1 of 2)	-6657	NM_152516	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
71273	chr14	105240571	105240730	+	0	NA	intron (NM_001242789, intron 1 of 12)	intron (NM_001242789, intron 1 of 12)	7235	NM_145685	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
85918	chr16	57088001	57088530	+	0	NA	Intergenic	Intergenic	-4318	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
50811	chr12	49072171	49072330	+	0	NA	Intergenic	Intergenic	-2271	NR_130123	121268		NM_144593	ENSG00000167550	RHEBL1	RHEBL1c	RHEB like 1	protein-coding
38046	chr11	35161301	35161500	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	-1550	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
140580	chr2	233357001	233357650	+	0	NA	intron (NM_152879, intron 1 of 29)	intron (NM_152879, intron 1 of 29)	2831	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
163397	chr3	50518151	50518250	+	0	NA	Intergenic	MIR3|SINE|MIR	-13956	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
54530	chr12	92125801	92126000	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	15813	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
48024	chr12	6943321	6944300	+	0	NA	promoter-TSS (NR_023317)	promoter-TSS (NR_023317)	-6	NR_023317	100147744		NR_023317	ENSG00000238923	RNU7-1	AGS9|RNU7|U7.1	RNA, U7 small nuclear 1	snRNA
18807	chr1	167636921	167638230	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	7343	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
91510	chr17	4947901	4949300	+	0	NA	promoter-TSS (NM_001375991)	promoter-TSS (NM_001375991)	-70	NM_005022	5216		NM_005022	ENSG00000108518	PFN1	ALS18	profilin 1	protein-coding
103774	chr17	78994071	78994450	+	0	NA	intron (NM_001159772, intron 5 of 5)	intron (NM_001159772, intron 5 of 5)	-14337	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
35930	chr11	2449021	2449550	+	0	NA	intron (NM_000218, intron 1 of 15)	intron (NM_000218, intron 1 of 15)	4277	NM_000218	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
236714	chrX	77925671	77926030	+	0	NA	intron (NR_104109, intron 1 of 9)	intron (NR_104109, intron 1 of 9)	15157	NR_104109	538		NM_000052	ENSG00000165240	ATP7A	DSMAX|HMNX|MK|MNK|SMAX3	ATPase copper transporting alpha	protein-coding
220450	chr8	100381971	100382980	+	0	NA	promoter-TSS (NR_039681)	promoter-TSS (NR_039681)	-288	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
109669	chr19	1022851	1023150	+	0	NA	Intergenic	Charlie5|DNA|hAT-Charlie	1478	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
110487	chr19	2034871	2035700	+	0	NA	Intergenic	Intergenic	15959	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
237469	chrX	119779571	119780230	+	0	NA	Intergenic	MIRb|SINE|MIR	7584	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
183443	chr5	78984021	78986100	+	0	NA	exon (NM_198709, exon 2 of 8)	exon (NM_198709, exon 2 of 8)	250	NM_000046	411		NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
26820	chr10	24464021	24464280	+	0	NA	intron (NM_001321681, intron 1 of 13)	intron (NM_001321681, intron 1 of 13)	-2381	NM_001282770	56243		NM_019590	ENSG00000120549	KIAA1217	ETL4|SKT	KIAA1217	protein-coding
14237	chr1	143230021	143230530	+	0	NA	Intergenic	Intergenic	192317	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
107467	chr18	46946571	46947250	+	0	NA	promoter-TSS (NM_001367621)	promoter-TSS (NM_001367621)	75	NM_001367621	83473		NM_031303	ENSG00000167216	KATNAL2	-	katanin catalytic subunit A1 like 2	protein-coding
234416	chrX	16799321	16799580	+	0	NA	intron (NM_001168683, intron 1 of 7)	intron (NM_001168683, intron 1 of 7)	12984	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
58492	chr12	132159771	132160130	+	0	NA	Intergenic	Intergenic	15493	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
126662	chr2	29010801	29013480	+	0	NA	intron (NM_199280, intron 7 of 19)	intron (NM_199280, intron 7 of 19)	30842	NM_001321538	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
70123	chr14	100253471	100253630	+	0	NA	intron (NM_003403, intron 1 of 4)	AluSx|SINE|Alu	14406	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
106783	chr18	23862721	23862980	+	0	NA	intron (NM_198129, intron 35 of 74)	MLT1F1|LTR|ERVL-MaLR	-10170	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
47751	chr12	6533801	6535900	+	0	NA	promoter-TSS (NM_001256799)	promoter-TSS (NM_001256799)	333	NM_002046	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
219081	chr8	65834321	65835030	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	7389	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
109580	chr19	904671	904830	+	0	NA	intron (NM_138774, intron 1 of 7)	AluJr|SINE|Alu	8469	NM_138774	91300		NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
225732	chr9	37028651	37028950	+	0	NA	intron (NR_103999, intron 1 of 8)	intron (NR_103999, intron 1 of 8)	5468	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
157957	chr22	49809271	49809430	+	0	NA	intron (NM_001304808, intron 2 of 12)	AluSg4|SINE|Alu	14981	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
232406	chr9	136051301	136051500	+	0	NA	intron (NM_144653, intron 1 of 5)	CpG	43889	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
223008	chr8	143279771	143280000	+	0	NA	TTS (NR_120683)	TTS (NR_120683)	1815	NR_120683	100507316		NR_120682	ENSG00000253716	MINCR	LINC01604	MYC-induced long non-coding RNA	ncRNA
65564	chr14	51943001	51943400	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-24629	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
97782	chr17	44689251	44690250	+	0	NA	promoter-TSS (NM_001099225)	promoter-TSS (NM_001099225)	26	NM_144609	124808		NM_144609	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
85848	chr16	57018021	57018700	+	0	NA	intron (NM_001384955, intron 2 of 47)	MIRc|SINE|MIR	28803	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
18267	chr1	161092701	161093050	+	0	NA	Intergenic	Intergenic	-3317	NM_030916	81607		NM_030916	ENSG00000143217	NECTIN4	EDSS1|LNIR|PRR4|PVRL4|nectin-4	nectin cell adhesion molecule 4	protein-coding
50941	chr12	49368621	49368880	+	0	NA	intron (NM_001293286, intron 1 of 12)	intron (NM_001293286, intron 1 of 12)	1288	NM_001293286	65244		NM_023071	ENSG00000123352	SPATS2	Nbla00526|P59SCR|SCR59|SPATA10	spermatogenesis associated serine rich 2	protein-coding
167240	chr3	128490111	128490700	+	0	NA	intron (NR_125398, intron 2 of 2)	CpG-20230	1202	NR_125398	101927167		NR_125398		GATA2-AS1	-	GATA2 antisense RNA 1	ncRNA
67352	chr14	69684971	69686100	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	73939	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
31488	chr10	96640801	96641400	+	0	NA	intron (NM_152309, intron 8 of 16)	(GT)n|Simple_repeat|Simple_repeat	-54088	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
229855	chr9	126361851	126361950	+	0	NA	intron (NM_033446, intron 2 of 9)	AluJb|SINE|Alu	35071	NM_001011703	89853		NM_033446	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
159409	chr3	13483301	13484200	+	0	NA	intron (NM_001330636, intron 3 of 6)	intron (NM_001330636, intron 3 of 6)	3444	NM_001136041	79885		NM_024827	ENSG00000163517	HDAC11	HD11	histone deacetylase 11	protein-coding
216689	chr8	22161651	22162330	+	0	NA	intron (NM_001385660, intron 3 of 6)	intron (NM_001385660, intron 3 of 6)	192	NM_001317779	6440		NM_003018	ENSG00000168484	SFTPC	BRICD6|PSP-C|SFTP2|SMDP2|SP-C|SP5	surfactant protein C	protein-coding
12669	chr1	109397301	109398380	+	0	NA	promoter-TSS (NM_002959)	promoter-TSS (NM_002959)	78	NM_002959	6272		NM_002959	ENSG00000134243	SORT1	Gp95|LDLCQ6|NT3|NTR3	sortilin 1	protein-coding
157607	chr22	46038751	46038850	+	0	NA	Intergenic	Intergenic	6068	NR_027036	100271722		NR_027036		LINC00899	-	long intergenic non-protein coding RNA 899	ncRNA
139281	chr2	219497501	219497800	+	0	NA	intron (NM_001286811, intron 2 of 3)	CpG-17033	-1241	NM_013335	29926		NM_013335	ENSG00000144591	GMPPA	AAMR	GDP-mannose pyrophosphorylase A	protein-coding
92329	chr17	8148851	8148950	+	0	NA	intron (NM_002616, intron 7 of 22)	intron (NM_002616, intron 7 of 22)	3504	NM_002616	5187		NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian regulator 1	protein-coding
85141	chr16	46380871	46381030	+	0	NA	Intergenic	Intergenic	188147	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
105806	chr18	2936571	2936730	+	0	NA	intron (NM_001375809, intron 7 of 19)	AluJb|SINE|Alu	9973	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
103145	chr17	77407471	77408150	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	2733	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
81149	chr16	4409151	4409930	+	0	NA	intron (NM_001351729, intron 3 of 27)	MIRb|SINE|MIR	6357	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
87735	chr16	75147471	75147630	+	0	NA	promoter-TSS (NM_001318469).2	promoter-TSS (NM_001318469).2	-974	NM_001318472	162239		NM_153688	ENSG00000184517	ZFP1	ZNF475	ZFP1 zinc finger protein	protein-coding
192993	chr6	28133871	28134630	+	0	NA	intron (NR_103455, intron 1 of 2)	MER20|DNA|hAT-Charlie	3066	NR_103456	100129195		NR_103455	ENSG00000269293	ZSCAN16-AS1	-	ZSCAN16 antisense RNA 1	ncRNA
135198	chr2	158754021	158754280	+	0	NA	Intergenic	Intergenic	-19148	NR_135242	100129029		NR_135242	ENSG00000204380	PKP4-AS1	-	PKP4 antisense RNA 1	ncRNA
168829	chr3	152245421	152246480	+	0	NA	intron (NM_001376839, intron 2 of 10)	AluJb|SINE|Alu	2318	NM_001376819	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
78448	chr15	92834071	92834380	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	38741	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
120874	chr19	45545141	45545600	+	0	NA	TTS (NM_025136)	TTS (NM_025136)	37891	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
64622	chr14	31004101	31004500	+	0	NA	intron (NM_014574, intron 1 of 15)	AluJb|SINE|Alu	10442	NR_030354	693209		NR_030354	ENSG00000207952	MIR624	MIRN624|hsa-mir-624|mir-624	microRNA 624	ncRNA
216560	chr8	21906951	21907050	+	0	NA	Intergenic	AluSx3|SINE|Alu	6690	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
106061	chr18	9101371	9103270	+	0	NA	promoter-TSS (NM_021074)	promoter-TSS (NM_021074)	-379	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
219763	chr8	81093201	81095180	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	17878	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
27786	chr10	35451121	35451680	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	114526	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
47609	chr12	5945221	5945480	+	0	NA	promoter-TSS (NM_001278596)	promoter-TSS (NM_001278596)	-91	NM_001364791	57101		NM_020373	ENSG00000047617	ANO2	C12orf3|TMEM16B	anoctamin 2	protein-coding
23584	chr1	229586721	229586800	+	0	NA	Intergenic	Intergenic	-28053	NM_012089	23456		NM_012089	ENSG00000135776	ABCB10	EST20237|M-ABC2|MTABC2	ATP binding cassette subfamily B member 10	protein-coding
229961	chr9	126704271	126704700	+	0	NA	Intergenic	Intergenic	90557	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
235948	chrX	53305951	53306050	+	0	NA	intron (NM_001111125, intron 1 of 14)	intron (NM_001111125, intron 1 of 14)	15350	NM_001111125	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
97991	chr17	45282701	45283680	+	0	NA	intron (NM_003954, intron 6 of 15)	intron (NM_003954, intron 6 of 15)	-21096	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
184867	chr5	112356151	112356250	+	0	NA	intron (NM_022140, intron 1 of 22)	ERVL-E-int|LTR|ERVL	63077	NR_144931	64097		NM_022140	ENSG00000129595	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
51076	chr12	49944601	49944800	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	-6037	NM_000486	359		NM_000486	ENSG00000167580	AQP2	AQP-CD|NDI2|WCH-CD	aquaporin 2	protein-coding
50778	chr12	49037301	49037850	+	0	NA	exon (NM_003482, exon 35 of 55)	exon (NM_003482, exon 35 of 55)	-18799	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
54041	chr12	75784551	75784850	+	0	NA	Intergenic	Intergenic	247076	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
80833	chr16	3487271	3487700	+	0	NA	TTS (NM_001083600)	TTS (NM_001083600)	-2016	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
58560	chr12	132349701	132349930	+	0	NA	Intergenic	(CACCAT)n|Simple_repeat|Simple_repeat	19965	NR_120467	101928416		NR_120467	ENSG00000255916	LOC101928416	-	uncharacterized LOC101928416	ncRNA
203995	chr7	1785521	1785780	+	0	NA	Intergenic	L1ME3E|LINE|L1	-43340	NR_120510	101927125		NR_120508	ENSG00000236081	ELFN1-AS1	MYCLo-2	ELFN1 antisense RNA 1	ncRNA
43627	chr11	83196971	83197130	+	0	NA	intron (NM_182603, intron 1 of 9)	intron (NM_182603, intron 1 of 9)	3338	NM_001300973	338699		NM_182603	ENSG00000137494	ANKRD42	PPP1R79|SARP	ankyrin repeat domain 42	protein-coding
222320	chr8	133502951	133504330	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	68247	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
22770	chr1	224409921	224410180	+	0	NA	intron (NM_001115113, intron 7 of 13)	AluSq2|SINE|Alu	-11739	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
19011	chr1	169604371	169605350	+	0	NA	intron (NM_003005, intron 9 of 16)	intron (NM_003005, intron 9 of 16)	-18379	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
130484	chr2	85559871	85560380	+	0	NA	intron (NM_001142269, intron 1 of 13)	Charlie17a|DNA|hAT-Charlie	1368	NM_001311312	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
10244	chr1	63575321	63575950	+	0	NA	Intergenic	AluJr|SINE|Alu	-17776	NM_002633	5236		NM_002633	ENSG00000079739	PGM1	CDG1T|GSD14	phosphoglucomutase 1	protein-coding
219664	chr8	80497521	80498280	+	0	NA	intron (NM_023929, intron 1 of 6)	AluSz|SINE|Alu	11674	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
51283	chr12	51216271	51216430	+	0	NA	intron (NM_001368008, intron 1 of 2)	intron (NM_001368008, intron 1 of 2)	955	NM_001368008	5463		NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
1208	chr1	2259951	2260050	+	0	NA	intron (NM_003036, intron 1 of 6)	L1MC4|LINE|L1	31681	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
117872	chr19	32582571	32582730	+	0	NA	intron (NM_004708, intron 2 of 5)	intron (NM_004708, intron 2 of 5)	1460	NM_004708	9141		NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
216717	chr8	22368821	22369530	+	0	NA	intron (NM_001135153, intron 1 of 8)	intron (NM_001135153, intron 1 of 8)	1637	NM_001135153	23516		NM_015359	ENSG00000104635	SLC39A14	HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
224540	chr9	19238321	19238630	+	0	NA	intron (NM_001330640, intron 1 of 32)	(CCCTC)n|Simple_repeat|Simple_repeat	7782	NR_073201	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
213779	chr7	140702601	140703000	+	0	NA	intron (NM_004546, intron 1 of 3)	intron (NM_004546, intron 1 of 3)	-5723	NR_024454	100134713		NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
58595	chr12	132469201	132470130	+	0	NA	Intergenic	L1MA9|LINE|L1	-20486	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
172226	chr4	1326671	1327180	+	0	NA	intron (NM_001017405, intron 4 of 8)	intron (NM_001017405, intron 4 of 8)	17134	NM_001297433	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
180369	chr5	7289351	7289550	+	0	NA	Intergenic	AluSx1|SINE|Alu	17264	NR_033906	442132		NM_001034846		LOC442132	-	golgin A6 family-like 1 pseudogene	pseudo
139000	chr2	218327151	218327250	+	0	NA	intron (NR_125777, intron 3 of 3)	intron (NR_125777, intron 3 of 3)	4021	NM_022572	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
200413	chr6	134632901	134633500	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-93195	NR_125856	101928304		NR_125855	ENSG00000232310	LINC03002	-	long intergenic non-protein coding RNA 3002	ncRNA
162120	chr3	46933121	46933400	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	43241	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
69678	chr14	98140521	98141580	+	0	NA	Intergenic	Intergenic	-162926	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
45343	chr11	118230001	118231080	+	0	NA	intron (NM_001286152, intron 5 of 5)	L2a|LINE|L2	-5529	NM_001286570	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
43974	chr11	93792821	93793250	+	0	NA	intron (NM_004268, intron 3 of 11)	intron (NM_004268, intron 3 of 11)	8753	NM_004268	9440		NM_004268	ENSG00000042429	MED17	CRSP6|CRSP77|DRIP80|SRB4|TRAP80	mediator complex subunit 17	protein-coding
42260	chr11	68204271	68204830	+	0	NA	intron (NR_161378, intron 1 of 9)	MLT1D|LTR|ERVL-MaLR	8746	NM_001369426	51111		NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|MRD51|SUV420H1	lysine methyltransferase 5B	protein-coding
133641	chr2	127042671	127043400	+	0	NA	Intergenic	Intergenic	39030	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
215207	chr7	155813851	155814150	+	0	NA	Intergenic	Intergenic	-1537	NM_000193	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
57507	chr12	122105701	122105900	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	27044	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
148065	chr20	63274621	63275130	+	0	NA	intron (NM_001281483, intron 1 of 12)	intron (NM_001281483, intron 1 of 12)	2062	NM_175609	55738		NM_018209	ENSG00000101199	ARFGAP1	ARF1GAP|HRIHFB2281	ADP ribosylation factor GTPase activating protein 1	protein-coding
99045	chr17	48894921	48895580	+	0	NA	exon (NM_001002027, exon 4 of 5)	exon (NM_001002027, exon 4 of 5)	2463	NM_005175	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
53529	chr12	67068521	67069900	+	0	NA	5' UTR (NM_001379349, exon 1 of 24)	5' UTR (NM_001379349, exon 1 of 24)	128	NM_001379351	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
66656	chr14	63882421	63882680	+	0	NA	intron (NM_015180, intron 1 of 114)	AluJr|SINE|Alu	29546	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
222577	chr8	140631571	140631730	+	0	NA	intron (NM_012154, intron 1 of 18)	L1MC5a|LINE|L1	3983	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
150233	chr21	41359201	41359700	+	0	NA	Intergenic	Intergenic	-2577	NM_002463	4600		NM_002463	ENSG00000183486	MX2	MXB	MX dynamin like GTPase 2	protein-coding
180063	chr5	1091721	1092380	+	0	NA	intron (NM_006598, intron 3 of 23).2	intron (NM_006598, intron 3 of 23).2	20013	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
64275	chr14	23325371	23325930	+	0	NA	3' UTR (NM_004643, exon 7 of 7)	3' UTR (NM_004643, exon 7 of 7)	3644	NM_001360552	8106		NM_004643	ENSG00000100836	PABPN1	OPMD|PAB2|PABII|PABP-2|PABP2	poly(A) binding protein nuclear 1	protein-coding
42295	chr11	68445621	68445880	+	0	NA	intron (NM_002335, intron 21 of 22)	intron (NM_002335, intron 21 of 22)	-15002	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
9881	chr1	54336951	54337250	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	69294	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
224273	chr9	6133621	6133930	+	0	NA	Intergenic	Intergenic	-81374	NM_001314047	90865		NM_033439	ENSG00000137033	IL33	C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV	interleukin 33	protein-coding
182365	chr5	60541551	60541850	+	0	NA	intron (NR_024617, intron 3 of 3)	intron (NR_024617, intron 3 of 3)	-45414	NM_001364599	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
104622	chr17	81430801	81431000	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	20288	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
239311	chrY	17085401	17085600	+	0	NA	Intergenic	Intergenic	-415458	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
47063	chr12	559071	559430	+	0	NA	intron (NM_173593, intron 18 of 19)	intron (NM_173593, intron 18 of 19)	27236	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
82967	chr16	21930151	21930900	+	0	NA	Intergenic	Intergenic	-22836	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
144811	chr20	36744101	36745030	+	0	NA	intron (NR_038370, intron 1 of 13)	intron (NR_038370, intron 1 of 13)	1525	NM_022477	57446		NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
40338	chr11	63922651	63923150	+	0	NA	Intergenic	Intergenic	-5736	NM_173587	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
235589	chrX	47572871	47573430	+	0	NA	intron (NM_006950, intron 12 of 12)	intron (NM_006950, intron 12 of 12)	-9286	NM_003254	7076		NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP|TIMP-1	TIMP metallopeptidase inhibitor 1	protein-coding
144536	chr20	35715771	35716680	+	0	NA	intron (NM_184234, intron 10 of 16)	AluSx|SINE|Alu	16820	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
167573	chr3	129469101	129469300	+	0	NA	intron (NM_001280545, intron 9 of 30)	intron (NM_001280545, intron 9 of 30)	28976	NM_052989	55764		NM_018262	ENSG00000163913	IFT122	CED|CED1|CFAP80|FAP80|SPG|WDR10|WDR10p|WDR140	intraflagellar transport 122	protein-coding
62140	chr13	95706251	95706580	+	0	NA	intron (NM_006260, intron 1 of 11)	ERVL-E-int|LTR|ERVL	29276	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
196477	chr6	43579201	43579600	+	0	NA	intron (NM_001291969, intron 1 of 8)	MER21A|LTR|ERVL	3215	NM_001291970	5429		NM_006502	ENSG00000170734	POLH	RAD30|RAD30A|XP-V|XPV	DNA polymerase eta	protein-coding
105587	chr18	322671	322830	+	0	NA	intron (NM_130386, intron 8 of 9)	intron (NM_130386, intron 8 of 9)	-54703	NM_005131	9984		NM_005131	ENSG00000079134	THOC1	DFNA86|HPR1|P84|P84N5	THO complex subunit 1	protein-coding
17200	chr1	156250171	156250580	+	0	NA	3' UTR (NM_001323615, exon 21 of 21)	3' UTR (NM_001323615, exon 21 of 21)	-2258	NM_001272106	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
174454	chr4	39711921	39712980	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSg|SINE|Alu	14314	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
193419	chr6	30454921	30455380	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-34359	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
24693	chr1	247297601	247298000	+	0	NA	3' UTR (NM_032752, exon 10 of 10)	3' UTR (NM_032752, exon 10 of 10)	34067	NM_032752	84838		NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
77147	chr15	79921451	79921750	+	0	NA	intron (NR_037653, intron 1 of 2)	intron (NR_037653, intron 1 of 2)	-1171	NR_028330	283687		NM_175898		ST20-AS1	C15orf37	ST20 antisense RNA 1	ncRNA
12003	chr1	95115901	95116100	+	0	NA	intron (NM_001199679, intron 1 of 6)	intron (NM_001199679, intron 1 of 6)	-1355	NM_152487	148534		NM_152487	ENSG00000152078	TLCD4	TMEM56	TLC domain containing 4	protein-coding
5120	chr1	24879271	24879630	+	0	NA	Intergenic	MSTD-int|LTR|ERVL-MaLR	39966	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
176756	chr4	102257801	102258000	+	0	NA	intron (NM_001135147, intron 10 of 10)	LTR41B|LTR|ERVL	66412	NM_001135148	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
125051	chr2	9614921	9615180	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	15947	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
115004	chr19	14058821	14060430	+	0	NA	intron (NM_001145028, intron 1 of 6)	intron (NM_001145028, intron 1 of 6)	-1987	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
235660	chrX	48534771	48534930	+	0	NA	Intergenic	Intergenic	-4769	NM_001348262	4943		NM_002536	ENSG00000068354	TBC1D25	MG81|OATL1	TBC1 domain family member 25	protein-coding
184438	chr5	99033101	99033900	+	0	NA	Intergenic	Intergenic	104366	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
115331	chr19	15122601	15123250	+	0	NA	exon (NM_006844, exon 5 of 16)	exon (NM_006844, exon 5 of 16)	2861	NM_006844	10994		NM_006844	ENSG00000105135	ILVBL	209L8|AHAS|HACL1L|HACL2|ILV2H	ilvB acetolactate synthase like	protein-coding
38304	chr11	43679101	43679300	+	0	NA	Intergenic	L1PA5|LINE|L1	-1538	NM_016142	51144		NM_016142	ENSG00000149084	HSD17B12	KAR|SDR12C1	hydroxysteroid 17-beta dehydrogenase 12	protein-coding
25407	chr10	6542071	6542330	+	0	NA	intron (NM_001323265, intron 1 of 17)	MIR3|SINE|MIR	38076	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
69367	chr14	94011151	94011250	+	0	NA	intron (NR_024183, intron 9 of 10).2	intron (NR_024183, intron 9 of 10).2	13899	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
114890	chr19	13904071	13904630	+	0	NA	intron (NM_001345844, intron 2 of 7)	AluJo|SINE|Alu	1767	NM_024323	79173		NM_024323	ENSG00000132016	BRME1	C19orf57|MEIOK21	break repair meiotic recombinase recruitment factor 1	protein-coding
177146	chr4	108125351	108125850	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	41197	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
135166	chr2	157777521	157777780	+	0	NA	intron (NM_001111067, intron 5 of 10)	intron (NM_001111067, intron 5 of 10)	60980	NM_001347667	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
154810	chr22	37018101	37018300	+	0	NA	exon (NM_001270483, exon 2 of 3)	exon (NM_001270483, exon 2 of 3)	1247	NM_003312	7263		NM_003312	ENSG00000128311	TST	RDS	thiosulfate sulfurtransferase	protein-coding
11035	chr1	84971901	84972800	+	0	NA	intron (NM_001330647, intron 1 of 14)	intron (NM_001330647, intron 1 of 14)	24763	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
112439	chr19	6368371	6368930	+	0	NA	exon (NM_006012, exon 6 of 6)	exon (NM_006012, exon 6 of 6)	-4144	NM_032306	84266		NM_032306	ENSG00000125652	ALKBH7	ABH7|SPATA11|UNQ6002	alkB homolog 7	protein-coding
69169	chr14	92608951	92610280	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	33381	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
1626	chr1	3727221	3727680	+	0	NA	intron (NM_001204185, intron 7 of 12)	intron (NM_001204185, intron 7 of 12)	19321	NR_033712	57212		NM_207306	ENSG00000293478	GFOD3P	KIAA0495|PDAM|TP73-AS1	Gfo/Idh/MocA-like oxidoreductase domain containing 3, pseudogene	pseudo
162773	chr3	49083471	49084030	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluJo|SINE|Alu	9882	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
58829	chr12	132839151	132840430	+	0	NA	TTS (NM_001161344)	TTS (NM_001161344)	-10921	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
144317	chr20	34872271	34873280	+	0	NA	promoter-TSS (NM_001351702)	promoter-TSS (NM_001351702)	81	NM_178026	2686		NM_178025	ENSG00000131067	GGT7	D20S101|GGT4|GGTL3|GGTL5	gamma-glutamyltransferase 7	protein-coding
182607	chr5	66150801	66151000	+	0	NA	intron (NM_139168, intron 1 of 12)	AluSx|SINE|Alu	6065	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
213746	chr7	140418671	140418830	+	0	NA	intron (NM_001008749, intron 3 of 3)	AluJr|SINE|Alu	14692	NM_001008749	401409		NM_001008749	ENSG00000146955	RAB19	RAB19B	RAB19, member RAS oncogene family	protein-coding
156088	chr22	40056551	40056650	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluJr|SINE|Alu	11783	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
34580	chr10	133239871	133240230	+	0	NA	exon (NM_014468, exon 3 of 3)	exon (NM_014468, exon 3 of 3)	2195	NM_014468	27287		NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
77349	chr15	82542921	82543600	+	0	NA	TTS (NM_001365246)	TTS (NM_001365246)	-2803	NR_111943	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
32865	chr10	110076521	110078450	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-69104	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
200295	chr6	132817601	132818100	+	0	NA	TTS (NM_001016)	TTS (NM_001016)	631	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
237927	chrX	132071271	132071450	+	0	NA	intron (NM_001042453, intron 7 of 10)	intron (NM_001042453, intron 7 of 10)	47771	NM_001042452	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
203482	chr7	532601	532800	+	0	NA	Intergenic	Intergenic	12309	NR_033963	441307		NR_033963	ENSG00000223855	PDGFA-DT	HRAT92	PDGFA divergent transcript	ncRNA
107929	chr18	57642171	57643680	+	0	NA	intron (NR_164148, intron 2 of 2)	LTR12C|LTR|ERV1	12594	NR_164148	100505549		NR_164148	ENSG00000267040	ATP8B1-AS1	-	ATP8B1 antisense RNA 1	ncRNA
115837	chr19	16518171	16518550	+	0	NA	3' UTR (NM_006387, exon 17 of 17)	3' UTR (NM_006387, exon 17 of 17)	21966	NM_032207	84167		NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
71061	chr14	104814351	104814450	+	0	NA	Intergenic	Intergenic	-6801	NR_024396	196872		NM_152646	ENSG00000258701	VESTAR	LINC00638	VEGFC mRNA stability associated lncRNA	ncRNA
140819	chr2	236541501	236541900	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-28125	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
68984	chr14	91469521	91469780	+	0	NA	intron (NR_158976, intron 11 of 16)	AluSx|SINE|Alu	40660	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
75069	chr15	64326901	64327100	+	0	NA	intron (NM_001329606, intron 1 of 11)	L1PA2|LINE|L1	29173	NM_001329606	53944		NM_022048	ENSG00000169118	CSNK1G1	CK1gamma1	casein kinase 1 gamma 1	protein-coding
236863	chrX	79456551	79456850	+	0	NA	Intergenic	LTR12|LTR|ERV1	-89148	NM_001171581	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
182957	chr5	71236601	71237250	+	0	NA	intron (NR_033968, intron 1 of 3).5	MLT1A|LTR|ERVL-MaLR	22370	NR_033968	100049076		NR_033968		GUSBP17	GUSBP9	GUSB pseudogene 17	pseudo
132122	chr2	101651621	101652530	+	0	NA	Intergenic	HAL1|LINE|L1	-45628	NM_145686	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
174040	chr4	26869271	26869430	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	8509	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
9351	chr1	46735651	46736000	+	0	NA	Intergenic	Intergenic	-16711	NM_014774	9813		NM_014774	ENSG00000159658	EFCAB14	KIAA0494	EF-hand calcium binding domain 14	protein-coding
15767	chr1	151167421	151167700	+	0	NA	intron (NR_037937, intron 5 of 6)	AluSz|SINE|Alu	1416	NR_037937	79005		NM_024041	ENSG00000163156	SCNM1	OFD19	sodium channel modifier 1	protein-coding
32890	chr10	110154771	110155200	+	0	NA	Intergenic	L1MB7|LINE|L1	-3005	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
126812	chr2	30460221	30460680	+	0	NA	intron (NM_182551, intron 2 of 6)	intron (NM_182551, intron 2 of 6)	13204	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
227777	chr9	93122671	93122830	+	0	NA	intron (NM_004148, intron 3 of 3)	intron (NM_004148, intron 3 of 3)	11501	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
179259	chr4	175946771	175947130	+	0	NA	intron (NM_005277, intron 1 of 7)	intron (NM_005277, intron 1 of 7)	55741	NM_001261447	2823		NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
84332	chr16	30181771	30181930	+	0	NA	Intergenic	AluY|SINE|Alu	-1560	NM_001193333	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
115496	chr19	15385171	15385330	+	0	NA	intron (NM_014371, intron 12 of 13)	AluYa5|SINE|Alu	-5463	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
155416	chr22	38401401	38401900	+	0	NA	Intergenic	Intergenic	-2724	NR_002821	400927		NM_001034843		TPTEP2	Z98749.2	TPTE pseudogene 2	pseudo
80180	chr16	2124151	2124630	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-8729	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
173508	chr4	9601451	9601550	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-45184	NR_031688	100302277		NR_031688	ENSG00000221275	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2	microRNA 548i-2	ncRNA
7568	chr1	35166501	35166700	+	0	NA	Intergenic	AluY|SINE|Alu	26545	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
162674	chr3	48925801	48926000	+	0	NA	intron (NM_001349209, intron 2 of 15)	AluSc5|SINE|Alu	-6515	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
56842	chr12	120244001	120244400	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	5963	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
49249	chr12	19443351	19443900	+	0	NA	intron (NM_001267043, intron 1 of 8)	AluSz|SINE|Alu	3026	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
212108	chr7	116210301	116211670	+	0	NA	intron (NM_015641, intron 1 of 6)	intron (NM_015641, intron 1 of 6)	446	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
90651	chr17	1673171	1674250	+	0	NA	intron (NM_006445, intron 22 of 42)	intron (NM_006445, intron 22 of 42)	11157	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
92099	chr17	7570551	7571250	+	0	NA	non-coding (NR_037926, exon 10 of 22)	non-coding (NR_037926, exon 10 of 22)	-1925	NM_001416	1973		NM_001416	ENSG00000161960	EIF4A1	DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I	eukaryotic translation initiation factor 4A1	protein-coding
94385	chr17	28947451	28948150	+	0	NA	intron (NM_020889, intron 2 of 8)	intron (NM_020889, intron 2 of 8)	3718	NM_020889	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
109819	chr19	1169021	1169580	+	0	NA	intron (NM_014963, intron 1 of 31)	G-rich|Low_complexity|Low_complexity	4968	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
207022	chr7	38398651	38399000	+	0	NA	intron (NM_139316, intron 16 of 19)	L1MA3|LINE|L1	57248	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
188166	chr5	150448821	150450600	+	0	NA	promoter-TSS (NM_001025070)	promoter-TSS (NM_001025070)	29	NM_005617	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
64755	chr14	34560651	34560900	+	0	NA	TTS (NM_001366519)	TTS (NM_001366519)	-4386	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
223464	chr8	144012071	144012550	+	0	NA	promoter-TSS (NM_001134374)	promoter-TSS (NM_001134374)	30	NM_001134374	375686		NM_198572	ENSG00000186583	SPATC1	SPATA15	spermatogenesis and centriole associated 1	protein-coding
146208	chr20	48785221	48785700	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	42539	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
55980	chr12	110125901	110126100	+	0	NA	intron (NR_144949, intron 1 of 18)	AluY|SINE|Alu	1643	NR_144951	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
41684	chr11	66625021	66626230	+	0	NA	exon (NM_006328, exon 2 of 3)	exon (NM_006328, exon 2 of 3)	8995	NM_006328	10432		NM_006328	ENSG00000239306	RBM14	COAA|PSP2|SIP|SYTIP1|TMEM137	RNA binding motif protein 14	protein-coding
5231	chr1	24998621	24999050	+	0	NA	Intergenic	Intergenic	-24668	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
177179	chr4	108158901	108159100	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	7797	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
22250	chr1	212618171	212618550	+	0	NA	intron (NM_001206484, intron 4 of 4)	intron (NM_001206484, intron 4 of 4)	3342	NM_001206486	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
157365	chr22	44700771	44700930	+	0	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	-1348	NM_181334	553158		NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
207944	chr7	51467601	51468000	+	0	NA	Intergenic	Intergenic	-74544	NR_157843	107986794		NR_157843		LOC107986794	-	uncharacterized LOC107986794	ncRNA
205236	chr7	8016271	8016430	+	0	NA	intron (NM_138426, intron 2 of 7)	AluY|SINE|Alu	47554	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
154204	chr22	31487421	31487880	+	0	NA	intron (NM_019843, intron 2 of 18)	AluJb|SINE|Alu	1906	NM_001164501	56478		NM_019843	ENSG00000184708	EIF4ENIF1	4E-T|Clast4	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding
83116	chr16	22514801	22515000	+	0	NA	intron (NM_001135865, intron 1 of 6)	(AC)n|Simple_repeat|Simple_repeat	1377	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
104400	chr17	81045451	81046350	+	0	NA	intron (NR_169579, intron 2 of 15)	intron (NR_169579, intron 2 of 15)	10749	NM_017450	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
21527	chr1	205810171	205810850	+	0	NA	5' UTR (NM_173854, exon 2 of 11)	5' UTR (NM_173854, exon 2 of 11)	2688	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
121428	chr19	47022321	47022650	+	0	NA	intron (NM_002517, intron 3 of 11)	MIR|SINE|MIR	2648	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
128625	chr2	61262621	61262880	+	0	NA	intron (NM_014709, intron 43 of 79)	L1PA15|LINE|L1	85332	NR_152212	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
50258	chr12	46260471	46260630	+	0	NA	intron (NM_001278387, intron 1 of 17)	MIR3|SINE|MIR	5966	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
184361	chr5	97022771	97023130	+	0	NA	intron (NM_175920, intron 14 of 17)	L1MB2|LINE|L1	64517	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
211799	chr7	107870551	107870930	+	0	NA	Intergenic	AluJo|SINE|Alu	-20367	NM_001289751	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
115468	chr19	15354621	15355550	+	0	NA	exon (NM_005858, exon 14 of 14)	exon (NM_005858, exon 14 of 14)	-22546	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
145718	chr20	45040571	45040730	+	0	NA	intron (NM_006282, intron 10 of 10)	L1MC5|LINE|L1	60477	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
12178	chr1	100363871	100364250	+	0	NA	intron (NM_001319210, intron 2 of 16)	AluJb|SINE|Alu	11554	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
201975	chr6	152206471	152206750	+	0	NA	intron (NM_033071, intron 124 of 145)	L2b|LINE|L2	-21232	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
91630	chr17	5412401	5412850	+	0	NA	intron (NM_002532, intron 3 of 16)	intron (NM_002532, intron 3 of 16)	-7016	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
7001	chr1	31872671	31873650	+	0	NA	Intergenic	L2a|LINE|L2	-57109	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
12871	chr1	110196901	110197850	+	0	NA	intron (NM_001010898, intron 10 of 11)	intron (NM_001010898, intron 10 of 11)	12612	NR_046546	100873974		NR_046546		KCNC4-DT	KCNC4-AS1|LINC02586	KCNC4 divergent transcript	ncRNA
137242	chr2	191690501	191691530	+	0	NA	TTS (NM_001031716)	TTS (NM_001031716)	834	NR_131917	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
175262	chr4	67465221	67465680	+	0	NA	Intergenic	L1PBa|LINE|L1	-43450	NR_110747	101927237		NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
27053	chr10	27139271	27139630	+	0	NA	intron (NM_001253866, intron 3 of 17)	AluJr4|SINE|Alu	14934	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
232094	chr9	133659671	133659830	+	0	NA	TTS (NM_000787)	TTS (NM_000787)	-2342	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
96817	chr17	41934951	41935250	+	0	NA	intron (NM_031421, intron 1 of 11)	intron (NM_031421, intron 1 of 11)	4483	NR_110662	83538		NM_031421	ENSG00000204815	ODAD4	TTC25	outer dynein arm docking complex subunit 4	protein-coding
141703	chr2	241838771	241839130	+	0	NA	Intergenic	MER101-int|LTR|ERV1	19944	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
188198	chr5	150669621	150669880	+	0	NA	intron (NM_133371, intron 2 of 6)	AluSx|SINE|Alu	8499	NM_001122853	91977		NM_133371	ENSG00000164591	MYOZ3	CS-3|CS3|FATZ-3|FRP3	myozenin 3	protein-coding
59381	chr13	24746951	24747980	+	0	NA	Intergenic	CpG	-16704	NM_001184993	56163		NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
122453	chr19	49502451	49502550	+	0	NA	Intergenic	Intergenic	-1632	NR_029703	406942		NR_029703	ENSG00000207782	MIR150	MIRN150|miRNA150|mir-150	microRNA 150	ncRNA
96034	chr17	39441771	39441930	+	0	NA	intron (NM_004774, intron 3 of 16)	AluSx1|SINE|Alu	9413	NM_004774	5469		NM_004774	ENSG00000125686	MED1	CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2	mediator complex subunit 1	protein-coding
169002	chr3	152431921	152432180	+	0	NA	intron (NM_207295, intron 3 of 8)	intron (NM_207295, intron 3 of 8)	-91060	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
110435	chr19	1976271	1976680	+	0	NA	intron (NM_001319, intron 2 of 11)	intron (NM_001319, intron 2 of 11)	-21926	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
141954	chr20	1286421	1286890	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	20361	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
28884	chr10	62779171	62780250	+	0	NA	Intergenic	Intergenic	-25010	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
218697	chr8	58566921	58567180	+	0	NA	intron (NM_001007069, intron 2 of 8)	intron (NM_001007069, intron 2 of 8)	13789	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
172077	chr4	1035971	1036580	+	0	NA	Intergenic	Intergenic	23811	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
47470	chr12	3890901	3891400	+	0	NA	Intergenic	Intergenic	-17702	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
19640	chr1	180195171	180195530	+	0	NA	intron (NM_001004128, intron 11 of 12)	intron (NM_001004128, intron 11 of 12)	-34914	NM_033343	89884		NM_033343	ENSG00000121454	LHX4	CPHD4	LIM homeobox 4	protein-coding
92127	chr17	7617651	7618700	+	0	NA	intron (NM_001289114, intron 1 of 7)	AluSx|SINE|Alu	-3278	NM_004860	9513		NM_004860	ENSG00000129245	FXR2	FMR1L2|FXR2P	FMR1 autosomal homolog 2	protein-coding
81347	chr16	4798151	4799150	+	0	NA	exon (NM_024589, exon 7 of 11)	exon (NM_024589, exon 7 of 11)	3281	NM_001253794	440335		NM_001253790	ENSG00000267795	SMIM22	CASIMO1	small integral membrane protein 22	protein-coding
75603	chr15	67109421	67110050	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	-15981	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
42486	chr11	69947751	69948250	+	0	NA	Intergenic	Intergenic	-37907	NM_001378092	55107		NM_018043	ENSG00000131620	ANO1	DOG1|INDMS|MYMY7|ORAOV2|TAOS2|TMEM16A	anoctamin 1	protein-coding
93743	chr17	19868821	19869430	+	0	NA	Intergenic	AluSz|SINE|Alu	-1189	NM_001142610	9706		NM_014683	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
202299	chr6	157220951	157221880	+	0	NA	Intergenic	Intergenic	102104	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
53860	chr12	70033301	70033500	+	0	NA	Intergenic	L1MDa|LINE|L1	208173	NM_182530	196446		NM_182530	ENSG00000166268	MYRFL	C12orf15|C12orf28|bcm1377	myelin regulatory factor like	protein-coding
78626	chr15	94238501	94238900	+	0	NA	intron (NR_169532, intron 1 of 23)	L2c|LINE|L2	7139	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
54610	chr12	92557051	92557600	+	0	NA	Intergenic	L2|LINE|L2	90646	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
132297	chr2	105142521	105142780	+	0	NA	Intergenic	Intergenic	-1463	NR_136172	105373984		NR_136172	ENSG00000226508	LINC01918	-	long intergenic non-protein coding RNA 1918	ncRNA
30453	chr10	79093771	79093930	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	24884	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
141604	chr2	241645201	241645600	+	0	NA	intron (NM_013325, intron 1 of 12)	intron (NM_013325, intron 1 of 12)	7707	NM_013325	23192		NM_013325	ENSG00000168397	ATG4B	APG4B|AUTL1|HsAPG4B	autophagy related 4B cysteine peptidase	protein-coding
144084	chr20	33721701	33722030	+	0	NA	Intergenic	Intergenic	-1555	NM_183397	11264		NM_007238	ENSG00000101417	PXMP4	PMP24	peroxisomal membrane protein 4	protein-coding
153933	chr22	30334271	30335100	+	0	NA	exon (NM_005877, exon 16 of 16)	exon (NM_005877, exon 16 of 16)	-7744	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
206103	chr7	27205521	27206030	+	0	NA	non-coding (NR_037843, exon 3 of 3)	non-coding (NR_037843, exon 3 of 3)	5354	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
142815	chr20	16599251	16599350	+	0	NA	Intergenic	Intergenic	-25852	NM_001199865	55614		NM_024704	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
46080	chr11	122821221	122821480	+	0	NA	Intergenic	HERV35I-int|LTR|ERV1	-17150	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
220826	chr8	102832321	102832580	+	0	NA	intron (NM_148174, intron 9 of 11)	intron (NM_148174, intron 9 of 11)	25628	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
107194	chr18	35970101	35970830	+	0	NA	Intergenic	Intergenic	-2160	NM_001201475	83608		NM_031446	ENSG00000141428	C18orf21	HsT3108|PNAS-124|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
7491	chr1	33251971	33252130	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-4442	NM_152493	149076		NM_152493	ENSG00000160094	ZNF362	RN|lin-29	zinc finger protein 362	protein-coding
134593	chr2	144310271	144310430	+	0	NA	intron (NM_001376311, intron 1 of 11)	L2a|LINE|L2	-15037	NM_001354361	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
53401	chr12	64713321	64713580	+	0	NA	TTS (NM_002076)	TTS (NM_002076)	45956	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
53895	chr12	70730021	70730300	+	0	NA	intron (NM_130846, intron 2 of 9)	intron (NM_130846, intron 2 of 9)	24448	NR_073474	5801		NM_002849	ENSG00000153233	PTPRR	EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ	protein tyrosine phosphatase receptor type R	protein-coding
178721	chr4	152786071	152786650	+	0	NA	intron (NM_001025593, intron 1 of 7)	L2b|LINE|L2	6406	NM_001025595	27236		NM_014447	ENSG00000164144	ARFIP1	HSU52521	ADP ribosylation factor interacting protein 1	protein-coding
74497	chr15	60124671	60124850	+	0	NA	Intergenic	L1MC5a|LINE|L1	120449	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
2722	chr1	10657321	10657580	+	0	NA	intron (NM_017766, intron 7 of 15)	intron (NM_017766, intron 7 of 15)	139196	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
140952	chr2	237766871	237767030	+	0	NA	intron (NM_001137550, intron 19 of 23)	AluJb|SINE|Alu	-31829	NM_001080504	375316		NM_198852	ENSG00000177483	RBM44	-	RNA binding motif protein 44	protein-coding
123892	chr19	55326501	55327080	+	0	NA	Intergenic	L1MB5|LINE|L1	-1449	NM_001282011	284417		NM_001085488	ENSG00000180061	TMEM150B	DRAM3|TMEM224|TTN2	transmembrane protein 150B	protein-coding
117428	chr19	19642001	19642900	+	0	NA	intron (NM_001288998, intron 2 of 19)	intron (NM_001288998, intron 2 of 19)	1207	NM_001288998	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
181255	chr5	39213571	39214430	+	0	NA	intron (NM_001349333, intron 1 of 19)	intron (NM_001349333, intron 1 of 19)	5563	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
23543	chr1	229250151	229250650	+	0	NA	Intergenic	Intergenic	-20662	NR_073545	5867		NM_004578	ENSG00000168118	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
191591	chr6	12040801	12041000	+	0	NA	intron (NM_002114, intron 2 of 8)	MSTA|LTR|ERVL-MaLR	28588	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
10076	chr1	58781501	58783400	+	0	NA	exon (NM_002228, exon 1 of 1)	exon (NM_002228, exon 1 of 1)	1597	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
230451	chr9	128173721	128173980	+	0	NA	intron (NM_001257975, intron 11 of 17)	AluY|SINE|Alu	13585	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
227799	chr9	93146571	93147000	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-12534	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
168410	chr3	142270371	142271230	+	0	NA	Intergenic	MER74C|LTR|ERVL	-45215	NM_001039547	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
11778	chr1	92475871	92477230	+	0	NA	intron (NM_001127216, intron 6 of 6)	intron (NM_001127216, intron 6 of 6)	7404	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
139057	chr2	218781921	218782330	+	0	NA	promoter-TSS (NM_000784)	promoter-TSS (NM_000784)	-22	NM_000784	1593		NM_000784	ENSG00000135929	CYP27A1	CP27|CTX|CYP27	cytochrome P450 family 27 subfamily A member 1	protein-coding
209059	chr7	74766671	74767480	+	0	NA	Intergenic	MIR|SINE|MIR	-6887	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
7138	chr1	32207351	32207730	+	0	NA	exon (NM_001160042, exon 5 of 5)	exon (NM_001160042, exon 5 of 5)	-1554	NM_001099434	149069		NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
158162	chr22	50205071	50205230	+	0	NA	intron (NM_031454, intron 1 of 8)	L1MB1|LINE|L1	4139	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
155325	chr22	38214371	38215730	+	0	NA	3' UTR (NM_012323, exon 3 of 3)	3' UTR (NM_012323, exon 3 of 3)	9670	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
69877	chr14	99317501	99317900	+	0	NA	Intergenic	Intergenic	-45503	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
161480	chr3	42403771	42404030	+	0	NA	intron (NM_001304386, intron 4 of 4)	intron (NM_001304386, intron 4 of 4)	6710	NM_144634	131375		NM_144634	ENSG00000157093	LYZL4	LYC4|LYZA	lysozyme like 4	protein-coding
216332	chr8	13150471	13150630	+	0	NA	intron (NM_182643, intron 5 of 17)	intron (NM_182643, intron 5 of 17)	-17261	NM_006094	10395		NM_006094	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
140602	chr2	233399271	233401150	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	12056	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
102938	chr17	76658221	76658750	+	0	NA	Intergenic	Intergenic	-13443	NR_130916	105274304		NR_130916	ENSG00000261335	LOC105274304	-	uncharacterized LOC105274304	ncRNA
51244	chr12	51009071	51010030	+	0	NA	promoter-TSS (NM_001174130)	promoter-TSS (NM_001174130)	-335	NM_001379448	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
10283	chr1	64837171	64837580	+	0	NA	intron (NM_001321857, intron 22 of 24)	intron (NM_001321857, intron 22 of 24)	92300	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
29624	chr10	71772911	71774650	+	0	NA	promoter-TSS (NM_022153)	promoter-TSS (NM_022153)	-260	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
99931	chr17	57113801	57114400	+	0	NA	intron (NM_001370423, intron 6 of 11)	intron (NM_001370423, intron 6 of 11)	18611	NM_001370427	8165		NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding
177222	chr4	108519921	108520380	+	0	NA	Intergenic	Intergenic	-37083	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
90359	chr17	1227921	1228900	+	0	NA	intron (NM_001322842, intron 1 of 1)	intron (NM_001322842, intron 1 of 1)	1312	NM_001322842	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
3834	chr1	16902971	16903330	+	0	NA	Intergenic	Intergenic	7170	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
79886	chr16	1541921	1542180	+	0	NA	exon (NM_001256541, exon 3 of 4)	exon (NM_001256541, exon 3 of 4)	8384	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
60789	chr13	45318821	45319080	+	0	NA	Intergenic	AluSz|SINE|Alu	17497	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
39519	chr11	61077701	61078400	+	0	NA	Intergenic	MIR|SINE|MIR	-15913	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
201641	chr6	149469271	149469830	+	0	NA	intron (NM_207360, intron 2 of 5)	intron (NM_207360, intron 2 of 5)	15464	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
49587	chr12	27039571	27039950	+	0	NA	Intergenic	AluSc8|SINE|Alu	17202	NM_004264	9412		NM_004264	ENSG00000152944	MED21	SRB7|SURB7|hSrb7	mediator complex subunit 21	protein-coding
226052	chr9	61122721	61123280	+	0	NA	Intergenic	CpG	-67036	NM_001113541	727905		NM_001113541	ENSG00000276581	SPATA31A5	FAM75A5	SPATA31 subfamily A member 5	protein-coding
185412	chr5	129771321	129771680	+	0	NA	Intergenic	Intergenic	23406	NM_001257308	100127206		NM_001257308	ENSG00000186367	MINAR2	DFNB120|KIAA1024L	membrane integral NOTCH2 associated receptor 2	protein-coding
112876	chr19	7613721	7614580	+	0	NA	intron (NM_020902, intron 11 of 16)	AluY|SINE|Alu	-3289	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
91727	chr17	6650771	6652700	+	0	NA	promoter-TSS (NM_016060)	promoter-TSS (NM_016060)	-27	NM_001105520	388327		NM_001105520	ENSG00000256806	C17orf100	-	chromosome 17 open reading frame 100	protein-coding
170095	chr3	183085671	183085900	+	0	NA	intron (NR_120639, intron 2 of 15)	LTR50|LTR|ERVL	13458	NR_120640	56922		NM_020166	ENSG00000078070	MCCC1	MCC-B|MCCA|MCCCalpha	methylcrotonyl-CoA carboxylase subunit 1	protein-coding
66525	chr14	61749821	61750230	+	0	NA	promoter-TSS (NR_045406)	promoter-TSS (NR_045406)	-936	NR_045406	100750247		NR_045406		HIF1A-AS2	3'aHIF-1A|aHIF	HIF1A antisense RNA 2	ncRNA
83323	chr16	24733951	24734380	+	0	NA	intron (NM_001330520, intron 2 of 23)	AluJr|SINE|Alu	4514	NM_014494	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
109952	chr19	1375801	1376450	+	0	NA	intron (NM_001369790, intron 14 of 14)	AluSc8|SINE|Alu	-7782	NM_024407	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
225317	chr9	34602401	34602600	+	0	NA	Intergenic	Intergenic	9597	NM_148178	138716		NM_148178	ENSG00000164967	RPP25L	C9orf23|bA296L22.5	ribonuclease P/MRP subunit p25 like	protein-coding
89795	chr16	89501871	89502230	+	0	NA	Intergenic	Intergenic	-6338	NM_001363850	6687		NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7 matrix AAA peptidase subunit, paraplegin	protein-coding
157650	chr22	46124571	46124730	+	0	NA	Intergenic	Intergenic	10964	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
15949	chr1	151832621	151833650	+	0	NA	Intergenic	Intergenic	-1333	NM_005060	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
11941	chr1	93817901	93818580	+	0	NA	intron (NM_001261408, intron 2 of 13)	L2a|LINE|L2	-28592	NR_030621	100126348		NR_030621	ENSG00000211575	MIR760	MIRN760|hsa-mir-760|mir-760	microRNA 760	ncRNA
14976	chr1	148013351	148013650	+	0	NA	intron (NR_111936, intron 1 of 9)	intron (NR_111936, intron 1 of 9)	1456	NR_111936	100034743		NR_003377		PDZK1P1	PDZK1P2	PDZ domain containing 1 pseudogene 1	pseudo
126609	chr2	28789951	28790650	+	0	NA	intron (NM_206876, intron 7 of 8)	L1MC5a|LINE|L1	-20534	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
198487	chr6	106321001	106321600	+	0	NA	intron (NM_004849, intron 1 of 7)	L2c|LINE|L2	4135	NM_001286106	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
130275	chr2	84874071	84874230	+	0	NA	intron (NM_001307978, intron 1 of 4)	intron (NM_001307978, intron 1 of 4)	6934	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
77641	chr15	85485071	85485230	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	104547	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
113088	chr19	8267621	8267880	+	0	NA	Intergenic	AluJo|SINE|Alu	40608	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
147901	chr20	62889851	62890350	+	0	NA	3' UTR (NM_080797, exon 15 of 15)	3' UTR (NM_080797, exon 15 of 15)	-7197	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
83475	chr16	27379201	27379400	+	0	NA	Intergenic	Intergenic	-22874	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
172393	chr4	1770271	1770680	+	0	NA	Intergenic	CpG	-22818	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
237402	chrX	119584501	119585430	+	0	NA	TTS (NM_001282161)	TTS (NM_001282161)	10402	NM_001282161	7319		NM_003336	ENSG00000077721	UBE2A	HHR6A|MRXS30|MRXSN|RAD6A|UBC2	ubiquitin conjugating enzyme E2 A	protein-coding
191417	chr6	10398221	10398680	+	0	NA	exon (NM_001372066, exon 7 of 7)	exon (NM_001372066, exon 7 of 7)	-6052	NR_145448	109729173		NR_145448	ENSG00000285278	TFAP2A-AS2	HIPSTR	TFAP2A antisense RNA 2	ncRNA
89760	chr16	89454801	89455930	+	0	NA	TTS (NR_110931)	TTS (NR_110931)	24447	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
138741	chr2	214797001	214797200	+	0	NA	exon (NM_001282549, exon 2 of 5)	exon (NM_001282549, exon 2 of 5)	12583	NM_001282549	580		NM_000465	ENSG00000138376	BARD1	-	BRCA1 associated RING domain 1	protein-coding
204240	chr7	2550201	2550400	+	0	NA	intron (NM_001350627, intron 2 of 12)	AluJb|SINE|Alu	5224	NR_146879	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
109602	chr19	930321	930750	+	0	NA	intron (NM_005224, intron 2 of 8)	AluY|SINE|Alu	4500	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
157900	chr22	49758551	49758650	+	0	NA	Intergenic	Intergenic	65731	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
126959	chr2	36137671	36137830	+	0	NA	Intergenic	Intergenic	217820	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
179883	chr5	647901	649600	+	0	NA	intron (NR_164122, intron 11 of 15)	intron (NR_164122, intron 11 of 15)	36410	NM_018140	55722		NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72	protein-coding
239254	chrY	13370901	13371550	+	0	NA	intron (NM_001258265, intron 4 of 23)	L1MB5|LINE|L1	-107952	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
147651	chr20	62218571	62218900	+	0	NA	intron (NM_007232, intron 1 of 2)	intron (NM_007232, intron 1 of 2)	1543	NM_007232	11255		NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
5906	chr1	26830151	26830700	+	0	NA	intron (NM_032283, intron 1 of 7)	MIR|SINE|MIR	3737	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
218679	chr8	58321471	58322130	+	0	NA	Intergenic	Intergenic	-49699	NR_105005	101929528		NR_105005	ENSG00000253281	LOC101929528	-	uncharacterized LOC101929528	ncRNA
8942	chr1	44216651	44216950	+	0	NA	intron (NM_001034024, intron 4 of 10)	L2b|LINE|L2	3329	NM_019100	55929		NM_019100	ENSG00000178028	DMAP1	DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4	DNA methyltransferase 1 associated protein 1	protein-coding
172099	chr4	1054371	1054850	+	0	NA	Intergenic	Intergenic	42146	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
91915	chr17	7314071	7314230	+	0	NA	exon (NM_004489, exon 5 of 11)	exon (NM_004489, exon 5 of 11)	1210	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
54457	chr12	91903001	91903400	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	238513	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
38122	chr11	35242121	35242380	+	0	NA	Intergenic	Intergenic	79300	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
73855	chr15	50119071	50119430	+	0	NA	promoter-TSS (NR_073597)	promoter-TSS (NR_073597)	-17	NR_073597	79895		NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
72335	chr15	31308121	31308780	+	0	NA	Intergenic	Intergenic	-18385	NM_001302461	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
71303	chr14	105316371	105317280	+	0	NA	intron (NM_001100913, intron 1 of 24)	intron (NM_001100913, intron 1 of 24)	-1248	NM_001242787	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
35535	chr11	1575771	1575930	+	0	NA	intron (NR_021489, intron 1 of 1).3	L1ME1|LINE|L1	3109	NR_021489	338651		NR_021489	ENSG00000233930	KRTAP5-AS1	-	KRTAP5-1/KRTAP5-2 antisense RNA 1	ncRNA
213542	chr7	139096421	139096980	+	0	NA	intron (NM_020119, intron 1 of 12)	intron (NM_020119, intron 1 of 12)	13020	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
202277	chr6	157068471	157069180	+	0	NA	intron (NM_001363725, intron 2 of 17)	intron (NM_001363725, intron 2 of 17)	32398	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
132279	chr2	104856851	104857400	+	0	NA	3' UTR (NM_006236, exon 1 of 1)	3' UTR (NM_006236, exon 1 of 1)	3010	NM_006236	5455		NM_006236	ENSG00000198914	POU3F3	BRN1|OTF8|SNIBFIS|brain-1|oct-8	POU class 3 homeobox 3	protein-coding
85647	chr16	56080521	56080730	+	0	NA	Intergenic	AluYk4|SINE|Alu	110469	NR_027078	283856		NR_027078	ENSG00000246379	GNAO1-DT	-	GNAO1 divergent transcript	ncRNA
231145	chr9	129864551	129865450	+	0	NA	intron (NM_001110303, intron 9 of 25)	L1ME4a|LINE|L1	-4605	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
147378	chr20	58567071	58567230	+	0	NA	intron (NR_034147, intron 6 of 6)	intron (NR_034147, intron 6 of 6)	-51751	NR_130908	164284		NM_153360	ENSG00000198768	APCDD1L	-	APC down-regulated 1 like	protein-coding
165117	chr3	71662671	71663030	+	0	NA	Intergenic	Intergenic	62552	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
1020	chr1	1864051	1865030	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	26547	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
172142	chr4	1196001	1196200	+	0	NA	non-coding (NR_024569, exon 4 of 4)	non-coding (NR_024569, exon 4 of 4)	12862	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
134020	chr2	131041121	131042880	+	0	NA	intron (NM_001375902, intron 7 of 10)	intron (NM_001375902, intron 7 of 10)	51162	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
116933	chr19	18840451	18840550	+	0	NA	intron (NM_001297549, intron 1 of 23)	intron (NM_001297549, intron 1 of 23)	8541	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
18494	chr1	161661301	161662300	+	0	NA	Intergenic	Intergenic	-1315	NM_004001	2213		NM_004001	ENSG00000072694	FCGR2B	CD32|CD32B|FCG2|FCGR2|FCGR2C|FcGRIIB|FcRII-c|FcgammaRIIb|IGFR2	Fc gamma receptor IIb	protein-coding
184848	chr5	111584771	111585130	+	0	NA	intron (NR_040093, intron 1 of 6)	LTR33|LTR|ERVL	-72353	NM_001308057	134429		NM_139164	ENSG00000164211	STARD4	-	StAR related lipid transfer domain containing 4	protein-coding
105969	chr18	5237501	5238730	+	0	NA	promoter-TSS (NR_026849)	promoter-TSS (NR_026849)	15	NR_015389	339290		NR_015389	ENSG00000263753	LINC00667	-	long intergenic non-protein coding RNA 667	ncRNA
204573	chr7	5234021	5234530	+	0	NA	TTS (NM_001033518)	TTS (NM_001033518)	20006	NM_001033520	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
235967	chrX	53578421	53579300	+	0	NA	intron (NM_031407, intron 43 of 83)	SVA_E|Retroposon|SVA	-21586	NR_029484	406889		NR_029484	ENSG00000208012	MIRLET7F2	LET7F2|MIRNLET7F2|let-7f-2	microRNA let-7f-2	ncRNA
225084	chr9	33299471	33299630	+	0	NA	intron (NM_147134, intron 2 of 15)	AluJo|SINE|Alu	9034	NM_147134	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
237174	chrX	107685171	107685730	+	0	NA	Intergenic	Intergenic	31058	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
50035	chr12	43831451	43831780	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4246	NM_001286211	84216		NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
176635	chr4	99848621	99848880	+	0	NA	intron (NM_014395, intron 3 of 8)	intron (NM_014395, intron 3 of 8)	31923	NM_014395	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
45384	chr11	118314371	118314700	+	0	NA	intron (NM_000733, intron 8 of 8)	intron (NM_000733, intron 8 of 8)	9805	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
28419	chr10	48064171	48064530	+	0	NA	Intergenic	Intergenic	-32710	NR_029396	414224		NR_029396	ENSG00000290898	AGAP12P	CTGLF12P|PTPN20CP	ArfGAP with GTPase domain, ankyrin repeat and PH domain 12, pseudogene	pseudo
154429	chr22	35345971	35346630	+	0	NA	intron (NR_156428, intron 12 of 13)	intron (NR_156428, intron 12 of 13)	-9501	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
36149	chr11	3138671	3138830	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	26560	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
209353	chr7	76269901	76270430	+	0	NA	intron (NM_001291831, intron 11 of 15)	intron (NM_001291831, intron 11 of 15)	-32508	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
177197	chr4	108301801	108302000	+	0	NA	Intergenic	Intergenic	129780	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
43828	chr11	86805801	86806400	+	0	NA	intron (NR_120591, intron 1 of 4)	intron (NR_120591, intron 1 of 4)	5558	NM_001293179	11098		NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	serine protease 23	protein-coding
224718	chr9	21505851	21506330	+	0	NA	intron (NR_152877, intron 1 of 3)	intron (NR_152877, intron 1 of 3)	6095	NR_029505	407035		NR_029505	ENSG00000199177	MIR31	MIRN31|hsa-mir-31|miR-31	microRNA 31	ncRNA
126731	chr2	30192651	30192750	+	0	NA	Intergenic	Intergenic	5266	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
211777	chr7	107560921	107562050	+	0	NA	intron (NM_001379511, intron 1 of 20)	L2|LINE|L2	2435	NM_001379516	10466		NM_006348	ENSG00000164597	COG5	CDG2I|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding
175036	chr4	52723451	52724130	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	10541	NR_003016	677810		NR_003016	ENSG00000212588	SNORA26	HBI-6	small nucleolar RNA, H/ACA box 26	snoRNA
125287	chr2	10497771	10498800	+	0	NA	Intergenic	Intergenic	48557	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
87078	chr16	68425871	68426400	+	0	NA	intron (NM_018667, intron 1 of 8)	intron (NM_018667, intron 1 of 8)	22373	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
195180	chr6	36030101	36030300	+	0	NA	intron (NM_139014, intron 1 of 10)	intron (NM_139014, intron 1 of 10)	2392	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
70298	chr14	101783601	101783800	+	0	NA	intron (NM_001352915, intron 2 of 14)	intron (NM_001352915, intron 2 of 14)	21330	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
43121	chr11	75244921	75245180	+	0	NA	Intergenic	Intergenic	4276	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
215250	chr7	156928451	156928750	+	0	NA	Intergenic	MER50|LTR|ERV1	-21112	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
193820	chr6	31473871	31474280	+	0	NA	Intergenic	Intergenic	2846	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
2371	chr1	9390121	9390380	+	0	NA	Intergenic	AluJb|SINE|Alu	38666	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
131995	chr2	100562201	100564400	+	0	NA	intron (NM_024065, intron 1 of 5)	CpG	307	NM_024065	79031		NM_024065	ENSG00000115539	PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin like 3	protein-coding
205062	chr7	6607171	6607680	+	0	NA	intron (NM_001303039, intron 6 of 6)	CpG	-8185	NM_017560	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
95330	chr17	35743821	35744250	+	0	NA	TTS (NM_139285)	TTS (NM_139285)	9204	NM_139285	246176		NM_139285	ENSG00000270765	GAS2L2	CILD41|GAR17	growth arrest specific 2 like 2	protein-coding
189144	chr5	171316401	171316600	+	0	NA	Intergenic	CpG	7252	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
102074	chr17	74952601	74952800	+	0	NA	intron (NM_030630, intron 16 of 18)	LTR16C|LTR|ERVL	16802	NM_001272005	347741		NM_178233	ENSG00000182938	OTOP3	-	otopetrin 3	protein-coding
59689	chr13	29531071	29531230	+	0	NA	intron (NM_003045, intron 4 of 12)	intron (NM_003045, intron 4 of 12)	-43400	NR_046378	100874107		NR_046378		MTUS2-AS1	-	MTUS2 antisense RNA 1	ncRNA
54935	chr12	96210071	96211030	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	16175	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
29977	chr10	73734251	73734900	+	0	NA	Intergenic	Intergenic	4013	NR_048575	2749		NR_048575	ENSG00000291043	GLUD1P3	C10orf102|GLUDP3	glutamate dehydrogenase 1 pseudogene 3	pseudo
86488	chr16	67000301	67001600	+	0	NA	exon (NM_001364782, exon 4 of 14)	exon (NM_001364782, exon 4 of 14)	411	NM_001190201	283848		NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
155541	chr22	38711321	38711830	+	0	NA	intron (NM_004286, intron 2 of 11)	AluSz6|SINE|Alu	5631	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
47301	chr12	1668571	1668730	+	0	NA	Intergenic	Intergenic	-8270	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
78555	chr15	93000751	93001050	+	0	NA	intron (NM_001271, intron 32 of 38)	AluSq10|SINE|Alu	72256	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
83093	chr16	22446451	22446750	+	0	NA	intron (NR_027154, intron 1 of 28)	AluSx3|SINE|Alu	-8885	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
47972	chr12	6879321	6879780	+	0	NA	intron (NR_135083, intron 2 of 3)	AluSx3|SINE|Alu	-4431	NR_002803	283345		NR_002803	ENSG00000240370	RPL13P5	RPL13-2|RPL13L|RPL13_4_1199|RRPL13L	ribosomal protein L13 pseudogene 5	pseudo
220595	chr8	100905801	100906000	+	0	NA	Intergenic	AluY|SINE|Alu	44671	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
206915	chr7	38191971	38192400	+	0	NA	intron (NM_001363344, intron 2 of 8)	(CTTTCT)n|Simple_repeat|Simple_repeat	13940	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
140420	chr2	233108921	233109450	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	48843	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
173621	chr4	11480651	11480950	+	0	NA	Intergenic	L2a|LINE|L2	-51906	NM_005114	9957		NM_005114	ENSG00000002587	HS3ST1	3OST|3OST1	heparan sulfate-glucosamine 3-sulfotransferase 1	protein-coding
164022	chr3	53222971	53223700	+	0	NA	Intergenic	Intergenic	32687	NM_001064	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
133975	chr2	130731651	130731950	+	0	NA	Intergenic	AluY|SINE|Alu	2730	NM_207364	344561		NM_207364	ENSG00000173302	GPR148	BTR|PGR6	G protein-coupled receptor 148	protein-coding
213797	chr7	140918151	140918780	+	0	NA	intron (NM_001374244, intron 1 of 18)	MER1B|DNA|hAT-Charlie	5803	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
96618	chr17	40558751	40558850	+	0	NA	intron (NM_001301714, intron 1 of 1)	intron (NM_001301714, intron 1 of 1)	1594	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
66899	chr14	65223551	65224050	+	0	NA	Intergenic	AluJb|SINE|Alu	-1453	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
8718	chr1	42454371	42454730	+	0	NA	intron (NM_032257, intron 1 of 7)	L2c|LINE|L2	1472	NM_032257	84217		NM_032257	ENSG00000066185	ZMYND12	-	zinc finger MYND-type containing 12	protein-coding
150421	chr21	42407651	42408030	+	0	NA	intron (NM_001243467, intron 2 of 11)	L1ME3Cz|LINE|L1	3938	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
202026	chr6	152976871	152977030	+	0	NA	intron (NM_001142522, intron 1 of 4)	MER20|DNA|hAT-Charlie	6091	NM_012177	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
35114	chr11	679171	679330	+	0	NA	intron (NM_001367390, intron 8 of 11)	AluY|SINE|Alu	15972	NM_021008	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
122188	chr19	48933251	48934350	+	0	NA	exon (NM_014475, exon 1 of 7)	exon (NM_014475, exon 1 of 7)	101	NM_014475	27294		NM_014475	ENSG00000104808	DHDH	2DD|HUM2DD	dihydrodiol dehydrogenase	protein-coding
53370	chr12	64671321	64671850	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-48980	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
63633	chr14	20685721	20686080	+	0	NA	intron (NM_002937, intron 1 of 1)	AluSg4|SINE|Alu	1340	NM_001282193	6038		NM_002937	ENSG00000258818	RNASE4	RAB1|RNS4	ribonuclease A family member 4	protein-coding
235355	chrX	44342851	44343900	+	0	NA	intron (NM_025184, intron 1 of 14)	intron (NM_025184, intron 1 of 14)	297	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
36347	chr11	3907451	3907830	+	0	NA	intron (NM_001382571, intron 1 of 9)	L2a|LINE|L2	51578	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
145540	chr20	44187521	44188250	+	0	NA	promoter-TSS (NM_020433)	promoter-TSS (NM_020433)	-697	NM_175913	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
61740	chr13	74138671	74138830	+	0	NA	Intergenic	Intergenic	-4821	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
124394	chr19	58399251	58399350	+	0	NA	promoter-TSS (NR_149054)	promoter-TSS (NR_149054)	-903	NR_149054	110806301		NR_149054	ENSG00000268307	LINC02560	-	long intergenic non-protein coding RNA 2560	ncRNA
48528	chr12	10188901	10189500	+	0	NA	intron (NM_153022, intron 3 of 3)	AluSz|SINE|Alu	10168	NM_001384897	120939		NM_153022	ENSG00000165685	TMEM52B	C12orf59	transmembrane protein 52B	protein-coding
74264	chr15	57081921	57082180	+	0	NA	intron (NM_001322156, intron 5 of 21)	intron (NM_001322156, intron 5 of 21)	-137380	NM_001306220	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
112849	chr19	7542701	7543100	+	0	NA	exon (NM_001166113, exon 15 of 35)	exon (NM_001166113, exon 15 of 35)	7183	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
79201	chr16	341571	342430	+	0	NA	intron (NM_181050, intron 2 of 9)	LTR12C|LTR|ERV1	10723	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
110527	chr19	2077271	2077700	+	0	NA	intron (NM_130807, intron 3 of 4)	intron (NM_130807, intron 3 of 4)	18841	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
143252	chr20	25059241	25060000	+	0	NA	Intergenic	AluJo|SINE|Alu	-1438	NM_001252675	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
109420	chr19	696801	697430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1663	NM_214710	400668		NM_214710	ENSG00000185198	PRSS57	NSP4|PRSSL1|UNQ782	serine protease 57	protein-coding
144732	chr20	36580101	36580680	+	0	NA	intron (NM_001199535, intron 2 of 4)	MIRb|SINE|MIR	5836	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
159224	chr3	12905471	12905630	+	0	NA	intron (NM_014869, intron 12 of 13)	intron (NM_014869, intron 12 of 13)	-20339	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
12361	chr1	101241051	101241150	+	0	NA	3' UTR (NM_001400, exon 2 of 2)	3' UTR (NM_001400, exon 2 of 2)	4081	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
182900	chr5	70288421	70288680	+	0	NA	intron (NR_029426, intron 1 of 9).3	L1PA10|LINE|L1	1627	NR_029426	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
158934	chr3	10139601	10140000	+	0	NA	Intergenic	AluJb|SINE|Alu	-1978	NM_001354723	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
92621	chr17	10081351	10082000	+	0	NA	intron (NM_201433, intron 1 of 13)	L1ME3Cz|LINE|L1	-45018	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
137126	chr2	191022301	191022800	+	0	NA	intron (NR_136318, intron 1 of 2)	intron (NR_136318, intron 1 of 2)	1024	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
115447	chr19	15328201	15329700	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluSp|SINE|Alu	3589	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
22934	chr1	225970021	225970650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-28843	NM_001172425	7044		NM_003240	ENSG00000143768	LEFTY2	EBAF|LEFTA|LEFTYA|TGFB4	left-right determination factor 2	protein-coding
176552	chr4	98483021	98483300	+	0	NA	intron (NM_005723, intron 3 of 7)	intron (NM_005723, intron 3 of 7)	175451	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
237620	chrX	124011601	124011800	+	0	NA	intron (NM_001282418, intron 2 of 33)	MSTC|LTR|ERVL-MaLR	49994	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
68943	chr14	91392621	91393450	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	24785	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
129015	chr2	64866751	64866850	+	0	NA	Intergenic	Intergenic	-3169	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
162218	chr3	47037371	47038800	+	0	NA	intron (NR_146158, intron 18 of 21)	intron (NR_146158, intron 18 of 21)	26543	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
123725	chr19	55053551	55054680	+	0	NA	intron (NM_001145971, intron 3 of 6).10	intron (NM_001145971, intron 3 of 6).10	9033	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
205178	chr7	7577951	7578250	+	0	NA	intron (NM_019005, intron 5 of 12)	L2a|LINE|L2	10074	NM_001370078	54468		NM_019005	ENSG00000164654	MIOS	MIO|Sea4|Yulink	meiosis regulator for oocyte development	protein-coding
182650	chr5	67181651	67182280	+	0	NA	3' UTR (NM_005582, exon 3 of 3)	3' UTR (NM_005582, exon 3 of 3)	14834	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
110845	chr19	2552521	2553550	+	0	NA	intron (NM_052847, intron 3 of 4)	L1M4|LINE|L1	76908	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
225536	chr9	35791371	35792180	+	0	NA	5' UTR (NM_001378923, exon 1 of 22)	5' UTR (NM_001378923, exon 1 of 22)	184	NM_003995	4882		NM_000907	ENSG00000159899	NPR2	AMD1|AMDM|ANPRB|ANPb|ECDM|GC-B|GCB|GUC2B|GUCY2B|NPRB|NPRBi|SNSK	natriuretic peptide receptor 2	protein-coding
218990	chr8	63038451	63039520	+	0	NA	promoter-TSS (NM_003878)	promoter-TSS (NM_003878)	-179	NM_003878	8836		NM_003878	ENSG00000137563	GGH	GATD10|GH	gamma-glutamyl hydrolase	protein-coding
20220	chr1	193155521	193155850	+	0	NA	intron (NM_024529, intron 10 of 16)	AluSz6|SINE|Alu	19182	NR_031691	100302163		NR_031691	ENSG00000221680	MIR1278	MIRN1278|hsa-mir-1278|mir-1278	microRNA 1278	ncRNA
110370	chr19	1908871	1910380	+	0	NA	intron (NM_001329539, intron 1 of 5)	intron (NM_001329539, intron 1 of 5)	4226	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
158078	chr22	49968111	49969350	+	0	NA	Intergenic	Intergenic	5864	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
92570	chr17	9022701	9023500	+	0	NA	exon (NM_004822, exon 2 of 7)	exon (NM_004822, exon 2 of 7)	1590	NM_004822	9423		NM_004822	ENSG00000065320	NTN1	MRMV4|NET1|NTN1L	netrin 1	protein-coding
62834	chr13	109776921	109777380	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	9433	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
63354	chr13	114034901	114035450	+	0	NA	intron (NM_001320822, intron 4 of 23).2	L1MC|LINE|L1	42780	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
28843	chr10	62527121	62527630	+	0	NA	Intergenic	L1PB1|LINE|L1	-152248	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
97586	chr17	44104971	44105130	+	0	NA	intron (NM_001382393, intron 3 of 26)	MIR3|SINE|MIR	-10862	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
93784	chr17	20274221	20274550	+	0	NA	intron (NM_001033555, intron 10 of 12)	intron (NM_001033555, intron 10 of 12)	-46789	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
225811	chr9	37650501	37651450	+	0	NA	promoter-TSS (NM_014907)	promoter-TSS (NM_014907)	21	NM_014907	22844		NM_014907	ENSG00000070601	FRMPD1	FRMD2	FERM and PDZ domain containing 1	protein-coding
166661	chr3	120067201	120067400	+	0	NA	intron (NM_001146156, intron 1 of 10)	L1MC5a|LINE|L1	17348	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
131482	chr2	96503471	96503830	+	0	NA	intron (NR_104346, intron 1 of 3)	intron (NR_104346, intron 1 of 3)	1707	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
196499	chr6	43659001	43659400	+	0	NA	intron (NM_152732, intron 4 of 4)	Tigger1|DNA|TcMar-Tigger	14164	NM_152732	221421		NM_152732	ENSG00000172426	RSPH9	C6orf206|CILD12|MRPS18AL1	radial spoke head component 9	protein-coding
52228	chr12	54392401	54392600	+	0	NA	intron (NR_120487, intron 1 of 3)	AluSx1|SINE|Alu	-1202	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
87103	chr16	68548751	68549350	+	0	NA	intron (NM_001305203, intron 2 of 4)	L2c|LINE|L2	9759	NM_001305208	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
55482	chr12	104722101	104722350	+	0	NA	intron (NM_018413, intron 2 of 2)	AluJb|SINE|Alu	130592	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
16914	chr1	155886751	155887050	+	0	NA	Intergenic	L1PA16|LINE|L1	24018	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
138412	chr2	205034071	205034230	+	0	NA	intron (NM_205863, intron 3 of 21)	intron (NM_205863, intron 3 of 21)	488675	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
82749	chr16	21413521	21414700	+	0	NA	intron (NM_130464, intron 3 of 12)	intron (NM_130464, intron 3 of 12)	11268	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
4047	chr1	18972321	18972980	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-15974	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
43730	chr11	86055921	86057530	+	0	NA	intron (NM_001206947, intron 1 of 18)	L1MB7|LINE|L1	12359	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
228463	chr9	99847821	99848280	+	0	NA	intron (NM_173200, intron 8 of 8)	AluJb|SINE|Alu	26165	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
26999	chr10	26801171	26801330	+	0	NA	intron (NR_145410, intron 2 of 11)	L1MC4|LINE|L1	59708	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
77010	chr15	78504301	78504730	+	0	NA	Intergenic	AluSg|SINE|Alu	-3049	NM_001083612	123688		NM_001013619	ENSG00000188266	HYKK	AGPHD1	hydroxylysine kinase	protein-coding
41643	chr11	66487571	66487800	+	0	NA	intron (NM_001256670, intron 4 of 16)	intron (NM_001256670, intron 4 of 16)	7251	NM_130443	10072		NM_005700	ENSG00000254986	DPP3	DPPIII	dipeptidyl peptidase 3	protein-coding
21170	chr1	203767301	203767500	+	0	NA	intron (NM_017773, intron 1 of 4)	AluSp|SINE|Alu	2217	NM_017773	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
222599	chr8	141020351	141020450	+	0	NA	Intergenic	Intergenic	-18321	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
199135	chr6	111714051	111716080	+	0	NA	intron (NM_001370529, intron 2 of 11)	intron (NM_001370529, intron 2 of 11)	44066	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
11258	chr1	89033701	89034480	+	0	NA	Intergenic	L1PA6|LINE|L1	-11224	NM_001319180	2635		NM_018284	ENSG00000117226	GBP3	-	guanylate binding protein 3	protein-coding
27582	chr10	32375501	32375700	+	0	NA	intron (NR_168507, intron 1 of 1)	intron (NR_168507, intron 1 of 1)	3169	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
90157	chr17	181271	181880	+	0	NA	promoter-TSS (NM_003585).2	promoter-TSS (NM_003585).2	75	NM_003585	8447		NM_003585	ENSG00000272636	DOC2B	DOC2BL	double C2 domain beta	protein-coding
56211	chr12	111585701	111586130	+	0	NA	intron (NM_001310121, intron 1 of 25)	AluJb|SINE|Alu	13400	NM_001372574	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
27318	chr10	30501901	30503380	+	0	NA	Intergenic	Intergenic	67994	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
145273	chr20	40986601	40987200	+	0	NA	intron (NR_145525, intron 1 of 2)	MamRep1527|LTR|LTR	6187	NR_145525	100128988		NR_145524		LOC100128988	-	uncharacterized LOC100128988	ncRNA
212824	chr7	130435471	130435630	+	0	NA	intron (NM_001257160, intron 1 of 2)	L1MD2|LINE|L1	5466	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
234459	chrX	17736551	17737600	+	0	NA	promoter-TSS (NM_001037535)	promoter-TSS (NM_001037535)	-374	NM_001037535	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
104457	chr17	81103101	81103680	+	0	NA	intron (NM_001385159, intron 2 of 8)	intron (NM_001385159, intron 2 of 8)	5779	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
75575	chr15	67072721	67073550	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	7533	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
32423	chr10	102478571	102479730	+	0	NA	TTS (NM_005736)	TTS (NM_005736)	17755	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
164944	chr3	71237251	71237350	+	0	NA	intron (NM_001012505, intron 5 of 6)	MER33|DNA|hAT-Charlie	7777	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
166805	chr3	122580621	122581080	+	0	NA	intron (NM_001113523, intron 1 of 11)	Tigger3a|DNA|TcMar-Tigger	3200	NM_001308320	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
185741	chr5	132100671	132101250	+	0	NA	Intergenic	Intergenic	27171	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
132246	chr2	102426951	102427450	+	0	NA	intron (NM_003853, intron 5 of 11)	L1MA4|LINE|L1	-5089	NR_039930	100616157		NR_039930	ENSG00000264764	MIR4772	mir-4772	microRNA 4772	ncRNA
175584	chr4	75664471	75664980	+	0	NA	intron (NM_203505, intron 1 of 11)	AluSz|SINE|Alu	8434	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
72213	chr15	30176971	30177750	+	0	NA	Intergenic	Intergenic	-18676	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
193571	chr6	30670151	30670450	+	0	NA	intron (NM_001164239, intron 4 of 19).6	intron (NM_001164239, intron 4 of 19).6	2706	NM_003587	8449		NM_003587	ENSG00000204560	DHX16	DBP2|DDX16|NMOAS|PRO2014|PRP8|PRPF2|Prp2	DEAH-box helicase 16	protein-coding
121872	chr19	48318871	48319230	+	0	NA	intron (NM_001364171, intron 3 of 15)	intron (NM_001364171, intron 3 of 15)	449	NM_144577	93233		NM_144577	ENSG00000105479	ODAD1	CCDC114|CILD20	outer dynein arm docking complex subunit 1	protein-coding
118140	chr19	34995171	34995700	+	0	NA	intron (NM_001320036, intron 1 of 19)	MIRb|SINE|MIR	708	NM_001320036	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
62017	chr13	84136971	84137800	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-3217	NR_046871	100874128		NR_046871		LINC00333	NCRNA00333	long intergenic non-protein coding RNA 333	ncRNA
32375	chr10	102404801	102405380	+	0	NA	intron (NM_001270965, intron 14 of 17)	intron (NM_001270965, intron 14 of 17)	4187	NR_073110	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
218646	chr8	57113501	57114000	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-104526	NR_038235	100507651		NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
228870	chr9	112376271	112376630	+	0	NA	Intergenic	AluSc|SINE|Alu	-3459	NR_036651	84263		NM_032303	ENSG00000119471	HSDL2	C9orf99|SDR13C1	hydroxysteroid dehydrogenase like 2	protein-coding
226556	chr9	72361251	72361550	+	0	NA	intron (NM_001102421, intron 1 of 5)	intron (NM_001102421, intron 1 of 5)	3156	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
211142	chr7	102545671	102546400	+	0	NA	intron (NM_001097615, intron 4 of 8)	AluSx|SINE|Alu	-1247	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
232794	chr9	136705251	136705550	+	0	NA	Intergenic	MER57D|LTR|ERV1	-7172	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
141003	chr2	238139221	238139900	+	0	NA	intron (NM_198582, intron 1 of 7)	CpG	892	NM_198582	377007		NM_198582	ENSG00000168427	KLHL30	-	kelch like family member 30	protein-coding
228345	chr9	98998851	98999480	+	0	NA	intron (NM_001855, intron 6 of 41)	intron (NM_001855, intron 6 of 41)	55258	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
233545	chrX	253171	253530	+	0	NA	Intergenic	Intergenic	-23006	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
124858	chr2	8091151	8091250	+	0	NA	intron (NR_034135, intron 7 of 8)	L2c|LINE|L2	-114386	NR_015405	339788		NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
143350	chr20	25861121	25861980	+	0	NA	Intergenic	SST1|Satellite|centr	-7529	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
144683	chr20	36437571	36437730	+	0	NA	intron (NM_001365621, intron 4 of 12)	intron (NM_001365621, intron 4 of 12)	-23818	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
12801	chr1	109801971	109803130	+	0	NA	Intergenic	Intergenic	-38627	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
12495	chr1	107964601	107966280	+	0	NA	promoter-TSS (NM_006113)	promoter-TSS (NM_006113)	-260	NM_006113	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
157833	chr22	47337301	47337500	+	0	NA	Intergenic	LTR33B|LTR|ERVL	-8171	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
86654	chr16	67460401	67460600	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	20657	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
59982	chr13	32311451	32311980	+	0	NA	exon (NM_001136571, exon 3 of 6)	exon (NM_001136571, exon 3 of 6)	3648	NM_001136571	646799		NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1 like	protein-coding
16066	chr1	153343871	153344230	+	0	NA	intron (NM_020393, intron 4 of 8)	LTR19B|LTR|ERV1	4791	NM_020393	57115		NM_020393	ENSG00000163218	PGLYRP4	PGLYRPIbeta|PGRP-Ibeta|PGRPIB|SBBI67	peptidoglycan recognition protein 4	protein-coding
205598	chr7	21879021	21879100	+	0	NA	intron (NM_001277115, intron 74 of 81)	intron (NM_001277115, intron 74 of 81)	66839	NM_018719	55536		NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
46131	chr11	123037851	123038150	+	0	NA	Intergenic	AluSx1|SINE|Alu	20156	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
12108	chr1	100040301	100041050	+	0	NA	intron (NM_033055, intron 1 of 11)	AluSx3|SINE|Alu	2580	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
145018	chr20	37902701	37903330	+	0	NA	promoter-TSS (NM_080607)	promoter-TSS (NM_080607)	-112	NM_080607	128434		NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
9516	chr1	51345571	51345730	+	0	NA	promoter-TSS (NM_001144832)	promoter-TSS (NM_001144832)	-534	NM_001144832	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
67248	chr14	68978901	68980330	+	0	NA	promoter-TSS (NR_073422)	promoter-TSS (NR_073422)	-67	NR_073422	161159		NR_073422	ENSG00000259062	ACTN1-DT	ACTN1-AS1|C14orf84	ACTN1 divergent transcript	ncRNA
211099	chr7	102502551	102503030	+	0	NA	intron (NM_001367767, intron 6 of 20)	AluSz|SINE|Alu	14987	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
12460	chr1	107829021	107829980	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-67723	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
195648	chr6	37876351	37876450	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	56673	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
46838	chr11	132357651	132358200	+	0	NA	Intergenic	Chap1_Mam|DNA|hAT-Charlie	73623	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript	ncRNA
78334	chr15	90997471	90997630	+	0	NA	TTS (NM_001289149)	TTS (NM_001289149)	-3015	NM_003981	9055		NM_003981	ENSG00000198901	PRC1	ASE1|MAP65	protein regulator of cytokinesis 1	protein-coding
153351	chr22	24420871	24421030	+	0	NA	intron (NR_103546, intron 18 of 19)	intron (NR_103546, intron 18 of 19)	-2647	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
231410	chr9	131053051	131053500	+	0	NA	intron (NM_006059, intron 11 of 27)	intron (NM_006059, intron 11 of 27)	-43201	NR_033701	83543		NM_031426	ENSG00000126878	AIF1L	C9orf58|IBA2	allograft inflammatory factor 1 like	protein-coding
178021	chr4	139415871	139416430	+	0	NA	Intergenic	MIR3|SINE|MIR	37891	NR_159964	107984036		NR_159963		RAB33B-AS1	-	RAB33B antisense RNA 1	ncRNA
41545	chr11	66290751	66290850	+	0	NA	Intergenic	Intergenic	-1094	NM_153266	256472		NM_153266	ENSG00000179292	TMEM151A	DYT36|EKD3|TMEM151	transmembrane protein 151A	protein-coding
186588	chr5	138505121	138506230	+	0	NA	TTS (NR_157090)	TTS (NR_157090)	36036	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
53471	chr12	66087471	66087850	+	0	NA	Intergenic	Intergenic	43090	NM_032338	84298		NM_032338	ENSG00000139233	LLPH	C12orf31|hLLP	LLP homolog, long-term synaptic facilitation factor	protein-coding
158213	chr22	50263351	50263600	+	0	NA	TTS (NR_110887)	TTS (NR_110887)	-1665	NM_001303252	6300		NM_002969	ENSG00000188130	MAPK12	ERK-6|ERK3|ERK6|MAPK 12|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
118293	chr19	35348901	35349500	+	0	NA	Intergenic	L2a|LINE|L2	-2342	NM_005303	2864		NM_005303	ENSG00000126266	FFAR1	FFA1R|GPCR40|GPR40	free fatty acid receptor 1	protein-coding
192456	chr6	24910601	24912050	+	0	NA	promoter-TSS (NM_001346032)	promoter-TSS (NM_001346032)	-277	NM_014722	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
9442	chr1	49257151	49257400	+	0	NA	promoter-TSS (NR_125988)	promoter-TSS (NR_125988)	-136	NR_125988	101929721		NR_125988	ENSG00000230114	AGBL4-AS1	-	AGBL4 antisense RNA 1	ncRNA
119101	chr19	39321971	39322480	+	0	NA	Intergenic	Intergenic	-1362	NM_020862	57622		NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
47861	chr12	6632201	6632950	+	0	NA	promoter-TSS (NM_001142961)	promoter-TSS (NM_001142961)	-926	NM_001142961	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
129154	chr2	66432851	66432950	+	0	NA	intron (NR_046438, intron 1 of 3)	intron (NR_046438, intron 1 of 3)	570	NR_046438	730198		NR_046438		MEIS1-AS3	-	MEIS1 antisense RNA 3	ncRNA
144784	chr20	36633751	36633850	+	0	NA	intron (NM_175077, intron 3 of 7)	intron (NM_175077, intron 3 of 7)	12396	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
59791	chr13	30308801	30309200	+	0	NA	Intergenic	LTR85a|LTR|Gypsy?	-1449	NM_032116	84056		NM_032116	ENSG00000102781	KATNAL1	-	katanin catalytic subunit A1 like 1	protein-coding
158982	chr3	10264951	10265400	+	0	NA	intron (NM_014760, intron 3 of 7)	AluSx|SINE|Alu	-15176	NR_162141	113219470		NR_162141		MIR12127	-	microRNA 12127	ncRNA
232693	chr9	136533701	136534330	+	0	NA	intron (NM_017617, intron 2 of 33)	CpG	12033	NM_017617	4851		NM_017617	ENSG00000148400	NOTCH1	AOS5|AOVD1|TAN1|hN1	notch receptor 1	protein-coding
203844	chr7	1448301	1448700	+	0	NA	intron (NM_182924, intron 3 of 16)	intron (NM_182924, intron 3 of 16)	10970	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
7219	chr1	32311301	32311700	+	0	NA	intron (NM_004964, intron 2 of 13)	intron (NM_004964, intron 2 of 13)	19417	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
154135	chr22	31229171	31230050	+	0	NA	intron (NM_005569, intron 2 of 15)	intron (NM_005569, intron 2 of 15)	17312	NM_005569	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
81050	chr16	4317171	4318180	+	0	NA	intron (NM_032575, intron 1 of 6).2	intron (NM_032575, intron 1 of 6).2	1608	NM_032575	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
151283	chr21	45488801	45489000	+	0	NA	intron (NM_001379500, intron 18 of 41)	intron (NM_001379500, intron 18 of 41)	10634	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
146486	chr20	49821871	49822430	+	0	NA	intron (NR_048540, intron 2 of 11)	MIR|SINE|MIR	9322	NR_048538	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
75673	chr15	67820551	67821800	+	0	NA	Intergenic	CpG	-4334	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
162379	chr3	48052501	48052900	+	0	NA	intron (NM_001384729, intron 2 of 20)	MER5A|DNA|hAT-Charlie	36148	NM_001384861	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
238480	chrX	153460901	153461200	+	0	NA	intron (NR_169631, intron 5 of 10)	L1MD2|LINE|L1	9526	NM_001385481	55559		NM_017518	ENSG00000213397	HAUS7	UCHL5IP|UIP1	HAUS augmin like complex subunit 7	protein-coding
47400	chr12	2834951	2835250	+	0	NA	promoter-TSS (NM_031474)	promoter-TSS (NM_031474)	-65	NM_031474	83714		NM_031474	ENSG00000053702	NRIP2	-	nuclear receptor interacting protein 2	protein-coding
172777	chr4	2933701	2935600	+	0	NA	promoter-TSS (NM_001120)	promoter-TSS (NM_001120)	175	NM_001146069	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
220175	chr8	95137621	95138050	+	0	NA	intron (NM_024613, intron 1 of 1)	intron (NM_024613, intron 1 of 1)	4050	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
151912	chr22	18970001	18971450	+	0	NA	intron (NR_045121, intron 1 of 2)	CpG	227	NR_110533	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
111992	chr19	4917871	4918300	+	0	NA	intron (NM_013282, intron 1 of 15)	intron (NM_013282, intron 1 of 15)	7718	NM_013282	29128		NM_013282	ENSG00000276043	UHRF1	ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95	ubiquitin like with PHD and ring finger domains 1	protein-coding
73280	chr15	41854251	41855100	+	0	NA	intron (NM_016642, intron 56 of 67)	intron (NM_016642, intron 56 of 67)	11876	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
169702	chr3	172099451	172099850	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	59119	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
47168	chr12	778521	778780	+	0	NA	intron (NM_018979, intron 1 of 27)	(TT)n|Simple_repeat|Simple_repeat	25727	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
187131	chr5	140430301	140430800	+	0	NA	intron (NM_020690, intron 1 of 35)	intron (NM_020690, intron 1 of 35)	28717	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
78653	chr15	94294171	94294530	+	0	NA	intron (NM_001385002, intron 2 of 23)	intron (NM_001385002, intron 2 of 23)	-61580	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
5175	chr1	24938271	24938430	+	0	NA	intron (NM_001031680, intron 1 of 5)	MIR3|SINE|MIR	-8074	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
174740	chr4	44448601	44449100	+	0	NA	promoter-TSS (NM_198353)	promoter-TSS (NM_198353)	-41	NM_198353	386617		NM_198353	ENSG00000183783	KCTD8	-	potassium channel tetramerization domain containing 8	protein-coding
94795	chr17	31097301	31098030	+	0	NA	intron (NM_001042492, intron 1 of 57)	intron (NM_001042492, intron 1 of 57)	2688	NM_001042492	4763		NM_000267	ENSG00000196712	NF1	NFNS|VRNF|WSS	neurofibromin 1	protein-coding
208433	chr7	66836621	66837600	+	0	NA	intron (NR_003934, intron 3 of 10)	intron (NR_003934, intron 3 of 10)	7716	NR_003934	729156		NR_003934	ENSG00000291206	GTF2IRD1P1	-	GTF2I repeat domain containing 1 pseudogene 1	pseudo
193191	chr6	29734421	29734930	+	0	NA	intron (NR_026972, intron 4 of 5).3	L1MB5|LINE|L1	11241	NM_001098478	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
60691	chr13	43875451	43875550	+	0	NA	intron (NM_144974, intron 1 of 6)	MER89|LTR|ERV1	-3678	NM_001128303	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
85566	chr16	53453651	53454630	+	0	NA	intron (NM_001323609, intron 7 of 20)	intron (NM_001323609, intron 7 of 20)	18521	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
62059	chr13	91417721	91417980	+	0	NA	intron (NM_004466, intron 1 of 7)	MER65D|LTR|ERV1	19229	NM_004466	2262		NM_004466	ENSG00000179399	GPC5	-	glypican 5	protein-coding
195960	chr6	41947171	41947330	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-5402	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
127274	chr2	38719471	38719880	+	0	NA	intron (NM_138801, intron 4 of 6)	AluSq2|SINE|Alu	31686	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
131434	chr2	96301751	96302230	+	0	NA	intron (NM_014014, intron 3 of 44)	intron (NM_014014, intron 3 of 44)	3556	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
54843	chr12	95103151	95103530	+	0	NA	intron (NM_018351, intron 14 of 20)	intron (NM_018351, intron 14 of 20)	-29722	NM_001032287	7181		NM_003297	ENSG00000120798	NR2C1	TR2	nuclear receptor subfamily 2 group C member 1	protein-coding
80031	chr16	1947501	1947700	+	0	NA	intron (NM_005061, intron 4 of 9)	L2b|LINE|L2	-4401	NM_001382264	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
97022	chr17	42304971	42305230	+	0	NA	intron (NM_001288720, intron 11 of 17)	AluJo|SINE|Alu	17044	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
160840	chr3	33069821	33070280	+	0	NA	intron (NM_000404, intron 2 of 15)	L1PA15|LINE|L1	26782	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
70216	chr14	100618251	100618550	+	0	NA	Intergenic	Intergenic	-30983	NM_001385089	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
15642	chr1	150717971	150718720	+	0	NA	intron (NM_001199829, intron 2 of 13)	AluJb|SINE|Alu	2550	NM_001199829	84072		NM_032132	ENSG00000143452	HORMAD1	CT46|NOHMA	HORMA domain containing 1	protein-coding
156788	chr22	41906801	41907250	+	0	NA	non-coding (NR_103834, exon 22 of 22)	non-coding (NR_103834, exon 22 of 22)	6081	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
213046	chr7	131051601	131052180	+	0	NA	intron (NR_109850, intron 3 of 5)	AluSx1|SINE|Alu	55140	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
48467	chr12	9758301	9759530	+	0	NA	intron (NM_001781, intron 1 of 4)	intron (NM_001781, intron 1 of 4)	1986	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
160375	chr3	27904701	27904900	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-70664	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
2645	chr1	10415221	10415550	+	0	NA	intron (NM_001304451, intron 7 of 11)	intron (NM_001304451, intron 7 of 11)	-15048	NM_198544	100526739		NM_198544	ENSG00000251503	CENPS-CORT	APITD1|APITD1-CORT|CENP-S|CENPS|FAAP16|MHF1	CENPS-CORT readthrough	protein-coding
94760	chr17	30818521	30819100	+	0	NA	intron (NM_015986, intron 1 of 7)	intron (NM_015986, intron 1 of 7)	5882	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
17750	chr1	159009501	159010480	+	0	NA	promoter-TSS (NM_005531)	promoter-TSS (NM_005531)	83	NM_001376587	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
222179	chr8	133001221	133001700	+	0	NA	intron (NM_003235, intron 35 of 47)	intron (NM_003235, intron 35 of 47)	45121	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
19813	chr1	182615751	182616980	+	0	NA	non-coding (NR_036490, exon 1 of 1)	non-coding (NR_036490, exon 1 of 1)	1225	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
162073	chr3	46875371	46875530	+	0	NA	Intergenic	Intergenic	-2271	NM_000316	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
121245	chr19	46662001	46662830	+	0	NA	non-coding (NR_040041, exon 1 of 3)	non-coding (NR_040041, exon 1 of 3)	937	NR_040041	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
86333	chr16	66425621	66425880	+	0	NA	Intergenic	Intergenic	-1545	NM_001197224	146227		NM_001136106	ENSG00000166546	BEAN1	BEAN|SCA31	brain expressed associated with NEDD4 1	protein-coding
90119	chr16	90112571	90112730	+	0	NA	intron (NR_126161, intron 3 of 3)	L1MD3|LINE|L1	10386	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
63535	chr14	16093551	16093650	+	0	NA	Intergenic	SAR|Satellite|Satellite	-2507517	NM_001013354	440153		NM_001013354	ENSG00000257115	OR11H12	-	olfactory receptor family 11 subfamily H member 12	protein-coding
30426	chr10	79027221	79028430	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	39623	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
236335	chrX	69505371	69505530	+	0	NA	exon (NM_015686, exon 1 of 3)	exon (NM_015686, exon 1 of 3)	1124	NM_015686	27112		NM_015686	ENSG00000130054	NALF2	CXorf63|FAM155B|TED|TMEM28|bB57D9.1	NALCN channel auxiliary factor 2	protein-coding
217405	chr8	28362401	28362600	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	23853	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
103829	chr17	79391811	79392450	+	0	NA	intron (NM_001082575, intron 2 of 14)	MIRb|SINE|MIR	124018	NM_001082575	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
233827	chrX	1487851	1488180	+	0	NA	intron (NM_178129, intron 1 of 1)	AluSc8|SINE|Alu	-34253	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
40444	chr11	64203351	64203650	+	0	NA	exon (NM_006819, exon 13 of 14)	exon (NM_006819, exon 13 of 14)	-2420	NM_001382448	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
116800	chr19	18529621	18530430	+	0	NA	Intergenic	Intergenic	-7955	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
110272	chr19	1814501	1815130	+	0	NA	TTS (NM_020695)	TTS (NM_020695)	1423	NR_031730	100302210		NR_031730	ENSG00000284216	MIR1909	MIRN1909|hsa-mir-1909|mir-1909	microRNA 1909	ncRNA
1272	chr1	2314201	2316450	+	0	NA	Intergenic	CpG	37336	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
207722	chr7	47977421	47977880	+	0	NA	intron (NR_037917, intron 3 of 8)	AluSx1|SINE|Alu	1965	NM_001363683	3364		NM_004507	ENSG00000136273	HUS1	hHUS1	HUS1 checkpoint clamp component	protein-coding
168145	chr3	138949821	138950700	+	0	NA	intron (NM_001040061, intron 2 of 2)	CpG	3043	NM_001040061	401089		NM_001040061	ENSG00000206262	FOXL2NB	C3orf72	FOXL2 neighbor	protein-coding
186949	chr5	139653751	139654350	+	0	NA	intron (NM_001317205, intron 1 of 2)	intron (NM_001317205, intron 1 of 2)	3061	NM_001317205	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
205566	chr7	20797571	20798730	+	0	NA	Intergenic	CpG	-11264	NM_182700	221833		NM_182700	ENSG00000164651	SP8	BTD	Sp8 transcription factor	protein-coding
141309	chr2	240444601	240444800	+	0	NA	intron (NM_002081, intron 1 of 8)	intron (NM_002081, intron 1 of 8)	9037	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
153678	chr22	29070151	29070550	+	0	NA	Intergenic	Intergenic	-2685	NM_001039570	83999		NM_032045	ENSG00000183762	KREMEN1	ECTD13|KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
170478	chr3	185943021	185944250	+	0	NA	Intergenic	LTR41|LTR|ERVL	-5621	NM_004593	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
194224	chr6	32227451	32227650	+	0	NA	Intergenic	Intergenic	-3483	NM_004557	4855		NM_004557	ENSG00000204301	NOTCH4	INT3	notch receptor 4	protein-coding
84931	chr16	31264471	31264650	+	0	NA	intron (NM_000632, intron 2 of 29)	FRAM|SINE|Alu	4585	NM_000632	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
27026	chr10	26853351	26853730	+	0	NA	intron (NM_001178116, intron 1 of 11)	AluY|SINE|Alu	7418	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
175532	chr4	74453801	74454000	+	0	NA	intron (NM_001657, intron 5 of 5)	AluSq2|SINE|Alu	8764	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
227077	chr9	84954171	84954350	+	0	NA	intron (NM_006180, intron 16 of 18)	intron (NM_006180, intron 16 of 18)	248359	NM_001369552	4915		NM_006180	ENSG00000148053	NTRK2	DEE58|EIEE58|GP145-TrkB|OBHD|TRKB|trk-B	neurotrophic receptor tyrosine kinase 2	protein-coding
211393	chr7	105024621	105025350	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	10780	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
235187	chrX	41334701	41335510	+	0	NA	intron (NM_001193417, intron 1 of 15)	intron (NM_001193417, intron 1 of 15)	939	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
105189	chr17	82296701	82297700	+	0	NA	Intergenic	Looper|DNA|PiggyBac	-4386	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
111485	chr19	3960501	3960730	+	0	NA	TTS (NR_030367)	TTS (NR_030367)	897	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
118688	chr19	38048521	38049600	+	0	NA	intron (NM_015073, intron 2 of 21)	AluSc8|SINE|Alu	-114036	NR_145800	109623473		NR_145800		SNORD152	-	small nucleolar RNA, C/D box 152	snoRNA
213373	chr7	135933671	135934330	+	0	NA	intron (NM_001128619, intron 3 of 3)	MSTA|LTR|ERVL-MaLR	43359	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
115603	chr19	16061501	16062240	+	0	NA	Intergenic	AluJo|SINE|Alu	-3817	NR_146442	105372292		NR_146442	ENSG00000267517	LINC01855	-	long intergenic non-protein coding RNA 1855	ncRNA
162346	chr3	47800671	47800830	+	0	NA	Intergenic	Intergenic	-2159	NM_014966	22907		NM_014966	ENSG00000132153	DHX30	DDX30|NEDMIAL|RETCOR	DExH-box helicase 30	protein-coding
35633	chr11	1834621	1835080	+	0	NA	intron (NM_001290333, intron 1 of 8)	(GCTGG)n|Simple_repeat|Simple_repeat	423	NM_001290333	90019		NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
232288	chr9	134450551	134450650	+	0	NA	Intergenic	Intergenic	44040	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
233321	chr9	137428971	137429530	+	0	NA	intron (NM_001256068, intron 4 of 11)	intron (NM_001256068, intron 4 of 11)	5855	NM_001256068	10811		NM_006647	ENSG00000188747	NOXA1	NY-CO-31|SDCCAG31|p51NOX	NADPH oxidase activator 1	protein-coding
64205	chr14	23044621	23044880	+	0	NA	TTS (NM_001099780)	TTS (NM_001099780)	2538	NM_001099780	122706		NM_001099780	ENSG00000222028	PSMB11	BETA5T	proteasome subunit beta 11	protein-coding
228521	chr9	100426471	100428350	+	0	NA	promoter-TSS (NM_001198805)	promoter-TSS (NM_001198805)	-19	NM_001198805	91283		NM_080655	ENSG00000066697	MSANTD3	C9orf30|L8	Myb/SANT DNA binding domain containing 3	protein-coding
180763	chr5	32155721	32156180	+	0	NA	intron (NM_022130, intron 1 of 3)	AluSp|SINE|Alu	18369	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
202522	chr6	158571521	158572350	+	0	NA	intron (NR_164859, intron 1 of 16)	intron (NR_164859, intron 1 of 16)	11844	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
130842	chr2	87193101	87193630	+	0	NA	Intergenic	L2b|LINE|L2	-1421	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
5012	chr1	24480671	24481400	+	0	NA	Intergenic	AluSq2|SINE|Alu	-21309	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
175905	chr4	80173321	80174300	+	0	NA	Intergenic	Intergenic	-11460	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
63114	chr13	113325301	113326300	+	0	NA	exon (NM_001286732, exon 7 of 7)	exon (NM_001286732, exon 7 of 7)	-25873	NR_120385	100874068		NR_046541		GRTP1-AS1	-	GRTP1 antisense RNA 1	ncRNA
204342	chr7	2851371	2851980	+	0	NA	Intergenic	L1MEd|LINE|L1	-7367	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
216384	chr8	17916071	17916430	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-6607	NM_001352660	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
73466	chr15	43494871	43495030	+	0	NA	intron (NM_005657, intron 1 of 27)	AluJb|SINE|Alu	-1794	NM_001355001	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
164526	chr3	63914201	63915000	+	0	NA	intron (NM_001177387, intron 3 of 12)	intron (NM_001177387, intron 3 of 12)	2488	NM_001377406	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
158495	chr3	2099221	2099480	+	0	NA	5' UTR (NM_001350095, exon 2 of 25)	5' UTR (NM_001350095, exon 2 of 25)	484	NM_175607	152330		NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
26692	chr10	22637151	22637250	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	76908	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
118415	chr19	35767421	35768080	+	0	NA	exon (NM_001367856, exon 9 of 11)	exon (NM_001367856, exon 9 of 11)	-7814	NM_001172630	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
38	chr1	190051	190680	+	0	NA	Intergenic	Intergenic	-2407	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
111618	chr19	4116801	4117000	+	0	NA	intron (NM_030662, intron 2 of 10)	AluSx|SINE|Alu	7222	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
151698	chr22	17280251	17280800	+	0	NA	Intergenic	Intergenic	-13792	NR_038398	27442		NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3	ncRNA
148765	chr21	8193971	8195100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3085	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
115953	chr19	16825001	16825830	+	0	NA	Intergenic	L2b|LINE|L2	-3983	NM_001297595	23309		NM_015260	ENSG00000127511	SIN3B	-	SIN3 transcription regulator family member B	protein-coding
124677	chr2	3380971	3381130	+	0	NA	intron (NM_016030, intron 1 of 11)	intron (NM_016030, intron 1 of 11)	1356	NM_016030	51112		NM_016030	ENSG00000171853	TRAPPC12	CGI-87|PEBAS|TTC-15|TTC15	trafficking protein particle complex subunit 12	protein-coding
8592	chr1	41404221	41404830	+	0	NA	Intergenic	Intergenic	-28856	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
57577	chr12	122286651	122286950	+	0	NA	intron (NM_001247997, intron 21 of 25)	AluSc8|SINE|Alu	-20306	NM_001351021	65082		NM_022916	ENSG00000139719	VPS33A	MPSPS	VPS33A core subunit of CORVET and HOPS complexes	protein-coding
43904	chr11	88815701	88815900	+	0	NA	intron (NM_001143831, intron 3 of 9)	MSTB1|LTR|ERVL-MaLR	247859	NM_000842	2915		NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
68835	chr14	91278751	91279050	+	0	NA	intron (NM_001080414, intron 28 of 29)	AluJb|SINE|Alu	-25020	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
182833	chr5	69233921	69235380	+	0	NA	promoter-TSS (NM_001324077)	promoter-TSS (NM_001324077)	-145	NM_001324072	1022		NM_001799	ENSG00000134058	CDK7	CAK|CAK1|CDKN7|HCAK|MO15|STK1|p39MO15	cyclin dependent kinase 7	protein-coding
69608	chr14	97477401	97477620	+	0	NA	intron (NR_110166, intron 1 of 4)	MLT1K|LTR|ERVL-MaLR	18694	NR_110166	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
175655	chr4	76758451	76758550	+	0	NA	intron (NM_020859, intron 8 of 10)	intron (NM_020859, intron 8 of 10)	139644	NM_001029870	345079		NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
171824	chr4	673051	673150	+	0	NA	intron (NM_007100, intron 3 of 3)	AluSx1|SINE|Alu	1176	NM_007100	521		NM_007100	ENSG00000169020	ATP5ME	ATP5I|ATP5K	ATP synthase membrane subunit e	protein-coding
46720	chr11	128871151	128871450	+	0	NA	Intergenic	Intergenic	-4004	NM_153764	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
144298	chr20	34712601	34713200	+	0	NA	3' UTR (NM_021202, exon 5 of 5)	3' UTR (NM_021202, exon 5 of 5)	8181	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
227226	chr9	88989101	88989780	+	0	NA	Intergenic	Intergenic	-1423	NM_001001938	1903		NM_005226	ENSG00000213694	S1PR3	C9orf108|C9orf47|EDG-3|EDG3|LPB3|S1P3|bA791O21.3	sphingosine-1-phosphate receptor 3	protein-coding
197627	chr6	83214921	83215400	+	0	NA	intron (NM_002395, intron 13 of 13)	intron (NM_002395, intron 13 of 13)	-21260	NM_001199917	5238		NM_015599	ENSG00000013375	PGM3	AGM1|IMD23|PAGM|PGM 3	phosphoglucomutase 3	protein-coding
152131	chr22	19967871	19968030	+	0	NA	intron (NM_007310, intron 3 of 3)	intron (NM_007310, intron 3 of 3)	4197	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
25477	chr10	6925821	6926530	+	0	NA	Intergenic	L1M7|LINE|L1	146577	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
38374	chr11	44633671	44633830	+	0	NA	Intergenic	LTR78|LTR|ERV1	68087	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
180664	chr5	18739771	18739930	+	0	NA	Intergenic	Intergenic	932576	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
90317	chr17	1113371	1113530	+	0	NA	intron (NM_001322840, intron 2 of 22).2	AluSx1|SINE|Alu	-4348	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
115704	chr19	16208021	16208880	+	0	NA	intron (NM_001130524, intron 4 of 12)	intron (NM_001130524, intron 4 of 12)	10539	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
125751	chr2	20822601	20823530	+	0	NA	promoter-TSS (NM_001282724)	promoter-TSS (NM_001282724)	36	NM_021925	60526		NM_021925	ENSG00000118961	LDAH	C2orf43|hLDAH	lipid droplet associated hydrolase	protein-coding
176056	chr4	82425171	82425330	+	0	NA	intron (NM_031372, intron 7 of 7)	intron (NM_031372, intron 7 of 7)	4975	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
39557	chr11	61124651	61124830	+	0	NA	intron (NM_001346456, intron 8 of 10)	L2b|LINE|L2	22251	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
30648	chr10	80466901	80467230	+	0	NA	intron (NM_001351268, intron 2 of 9)	MER49|LTR|ERV1	-1176	NM_001351272	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
27851	chr10	40541471	40541630	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1826495	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
219369	chr8	70373171	70373600	+	0	NA	intron (NM_001321703, intron 1 of 22)	L1ME2|LINE|L1	30005	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
12073	chr1	98991271	98991630	+	0	NA	intron (NM_001010861, intron 1 of 5)	intron (NM_001010861, intron 1 of 5)	-12826	NR_033940	100129620		NR_033940	ENSG00000232825	PLPPR5-AS1	-	PLPPR5 antisense RNA 1	ncRNA
5127	chr1	24887271	24887630	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	31966	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
96696	chr17	41338671	41339780	+	0	NA	Intergenic	Intergenic	11603	NM_004138	3883		NM_004138	ENSG00000006059	KRT33A	HA3I|Ha-3I|K33A|KRTHA3A|Krt1-3|hHa3-I	keratin 33A	protein-coding
216230	chr8	12188451	12190100	+	0	NA	intron (NR_146925, intron 1 of 3)	(AAAT)n|Simple_repeat|Simple_repeat	3539	NR_146925	619423		NR_146925		FAM85A	-	family with sequence similarity 85 member A	ncRNA
191171	chr6	4936521	4936830	+	0	NA	intron (NM_001368125, intron 5 of 8)	intron (NM_001368125, intron 5 of 8)	46635	NM_001143971	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
17270	chr1	156398451	156398750	+	0	NA	Intergenic	(TCCTTAGTCA)n|Simple_repeat|Simple_repeat	21829	NR_029691	407046		NR_029691	ENSG00000207933	MIR9-1	MIRN9-1|hsa-mir-9-1|miRNA9-1|mir-9-1	microRNA 9-1	ncRNA
177320	chr4	109704571	109704880	+	0	NA	Intergenic	AluSz|SINE|Alu	-1280	NM_001226	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
199429	chr6	117102271	117102650	+	0	NA	Intergenic	L1HS|LINE|L1	-163098	NM_153453	245806		NM_153453	ENSG00000170162	VGLL2	VGL2|VITO1	vestigial like family member 2	protein-coding
12286	chr1	100687451	100687550	+	0	NA	Intergenic	L1PB1|LINE|L1	-32140	NM_080682	7412		NM_001078	ENSG00000162692	VCAM1	CD106|INCAM-100	vascular cell adhesion molecule 1	protein-coding
27158	chr10	28381621	28382210	+	0	NA	Intergenic	Intergenic	-78851	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
122968	chr19	50789671	50789830	+	0	NA	promoter-TSS (NM_033068)	promoter-TSS (NM_033068)	-665	NM_033068	93650		NM_033068	ENSG00000142513	ACP4	ACPT|AI1J	acid phosphatase 4	protein-coding
142130	chr20	2715571	2715930	+	0	NA	intron (NR_138537, intron 7 of 17)	AluSz6|SINE|Alu	22872	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
219063	chr8	65807601	65808300	+	0	NA	intron (NM_001242318, intron 1 of 12)	MLT1L|LTR|ERVL-MaLR	-18893	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
147219	chr20	57390801	57392200	+	0	NA	5' UTR (NM_017495, exon 1 of 4)	5' UTR (NM_017495, exon 1 of 4)	104	NM_183425	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
113972	chr19	10811201	10811750	+	0	NA	intron (NM_001005361, intron 14 of 20)	intron (NM_001005361, intron 14 of 20)	6021	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
23645	chr1	230867821	230869000	+	0	NA	exon (NM_032800, exon 1 of 4)	exon (NM_032800, exon 1 of 4)	111	NM_032800	84886		NM_032800	ENSG00000119280	C1orf198	-	chromosome 1 open reading frame 198	protein-coding
106761	chr18	23584571	23585800	+	0	NA	intron (NM_000271, intron 1 of 24)	AluJb|SINE|Alu	1321	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
132318	chr2	105336971	105338630	+	0	NA	intron (NM_024093, intron 1 of 3)	intron (NM_024093, intron 1 of 3)	260	NM_001286537	79074		NM_024093	ENSG00000135974	C2orf49	asw	chromosome 2 open reading frame 49	protein-coding
144266	chr20	34559601	34561430	+	0	NA	TTS (NM_032514)	TTS (NM_032514)	1797	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
72042	chr15	28718901	28719100	+	0	NA	intron (NR_135833, intron 1 of 1)	intron (NR_135833, intron 1 of 1)	-6579	NM_001282468	653720		NM_001282468	ENSG00000188626	GOLGA8M	-	golgin A8 family member M	protein-coding
95431	chr17	36118671	36119500	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	15258	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
91439	chr17	4744921	4745180	+	0	NA	intron (NM_032265, intron 11 of 12)	intron (NM_032265, intron 11 of 12)	5035	NM_032265	84225		NM_032265	ENSG00000141497	ZMYND15	SPGF14	zinc finger MYND-type containing 15	protein-coding
165471	chr3	98836921	98837180	+	0	NA	intron (NM_080927, intron 3 of 15)	SVA_F|Retroposon|SVA	64645	NM_080927	131566		NM_080927	ENSG00000057019	DCBLD2	CLCP1|ESDN	discoidin, CUB and LCCL domain containing 2	protein-coding
215352	chr7	157379451	157380200	+	0	NA	intron (NM_001363676, intron 5 of 6)	AluSx1|SINE|Alu	42821	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
50342	chr12	47095121	47095530	+	0	NA	intron (NM_138371, intron 1 of 3)	L1ME3A|LINE|L1	-15366	NM_001370299	347902		NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
28457	chr10	49190071	49191020	+	0	NA	Intergenic	Intergenic	-2154	NM_001288743	170371		NM_001010863	ENSG00000204161	TMEM273	C10orf128	transmembrane protein 273	protein-coding
35354	chr11	1228701	1229100	+	0	NA	intron (NM_002458, intron 8 of 48)	intron (NM_002458, intron 8 of 48)	5834	NM_002458	727897		NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
4646	chr1	22135101	22135500	+	0	NA	intron (NM_030761, intron 1 of 4)	MIRb|SINE|MIR	7797	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
27396	chr10	31322601	31323180	+	0	NA	intron (NM_001323675, intron 1 of 6)	intron (NM_001323675, intron 1 of 6)	1230	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
186976	chr5	139695901	139696100	+	0	NA	Intergenic	MIR|SINE|MIR	20557	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
177577	chr4	119454171	119455830	+	0	NA	promoter-TSS (NR_135112)	promoter-TSS (NR_135112)	217	NR_037630	645513		NR_037630		SEPTIN7P14	-	septin 7 pseudogene 14	pseudo
104943	chr17	81938351	81938650	+	0	NA	Intergenic	Intergenic	-1172	NM_001282280	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
37562	chr11	18731771	18732480	+	0	NA	intron (NM_032781, intron 12 of 14)	intron (NM_032781, intron 12 of 14)	-5937	NR_160413	283284		NM_173588	ENSG00000179057	IGSF22	IGFN2	immunoglobulin superfamily member 22	protein-coding
207895	chr7	50415671	50415830	+	0	NA	Intergenic	Intergenic	34600	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
223708	chr8	144449371	144449730	+	0	NA	TTS (NM_001330618)	TTS (NM_001330618)	-5110	NM_013432	4796		NM_013432	ENSG00000160949	TONSL	IKBR|NFKBIL2|SEMDSP	tonsoku like, DNA repair protein	protein-coding
156294	chr22	40502921	40503180	+	0	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-18750	NR_109965	101927257		NR_109965	ENSG00000232564	MRTFA-AS1	-	MRTFA antisense RNA 1	ncRNA
88986	chr16	87910301	87910650	+	0	NA	intron (NM_001739, intron 2 of 6)	intron (NM_001739, intron 2 of 6)	26054	NM_001367225	763		NM_001739	ENSG00000174990	CA5A	CA5|CA5AD|CAV|CAVA|GS1-21A4.1	carbonic anhydrase 5A	protein-coding
72554	chr15	34404101	34404600	+	0	NA	intron (NM_001368072, intron 4 of 23)	intron (NM_001368072, intron 4 of 23)	-14582	NM_181077	23015		NM_015003	ENSG00000175265	GOLGA8A	CFAP286|FAP286|GM88|GOLGA8B	golgin A8 family member A	protein-coding
67951	chr14	74833521	74834000	+	0	NA	intron (NM_019589, intron 19 of 20)	intron (NM_019589, intron 19 of 20)	42385	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
116214	chr19	17506821	17507480	+	0	NA	TTS (NM_198580)	TTS (NM_198580)	-4499	NM_012088	25796		NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
122996	chr19	50909171	50909750	+	0	NA	intron (NM_001302961, intron 1 of 4)	intron (NM_001302961, intron 1 of 4)	1278	NM_001302961	9622		NM_004917	ENSG00000167749	KLK4	AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein	kallikrein related peptidase 4	protein-coding
106490	chr18	14607401	14607600	+	0	NA	Intergenic	L1MC3|LINE|L1	-63900	NR_134878	388468		NM_001137671	ENSG00000183206	POTEC	A26B2|CT104.6|POTE-18|POTE18	POTE ankyrin domain family member C	protein-coding
225032	chr9	33149501	33149900	+	0	NA	intron (NM_001378495, intron 1 of 5)	L1MC4|LINE|L1	-17248	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
66623	chr14	63731501	63731700	+	0	NA	Intergenic	Intergenic	-3535	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
139700	chr2	227474721	227475080	+	0	NA	intron (NM_001135189, intron 1 of 11)	MIRb|SINE|MIR	2744	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
122640	chr19	49835471	49836800	+	0	NA	intron (NM_030973, intron 16 of 17)	intron (NM_030973, intron 16 of 17)	4117	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
71863	chr15	22274901	22275200	+	0	NA	intron (NR_033735, intron 1 of 2)	(CATC)n|Simple_repeat|Simple_repeat	16436	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
136503	chr2	177237521	177238180	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	18160	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
86215	chr16	58095371	58095530	+	0	NA	Intergenic	Intergenic	33931	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
148839	chr21	8403201	8403550	+	0	NA	intron (NR_038958, intron 2 of 6).2	intron (NR_038958, intron 2 of 6).2	6449	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
222146	chr8	132651321	132651800	+	0	NA	intron (NR_135912, intron 3 of 11)	intron (NR_135912, intron 3 of 11)	23985	NR_135908	23639		NM_012472	ENSG00000129295	DNAAF11	CILD19|LRRC6|LRTP|TSLRP|tilB	dynein axonemal assembly factor 11	protein-coding
213079	chr7	131091301	131092480	+	0	NA	intron (NR_109852, intron 2 of 5)	AluJb|SINE|Alu	15140	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
28935	chr10	63205821	63206080	+	0	NA	intron (NM_001322258, intron 9 of 24)	AluJb|SINE|Alu	63273	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
216017	chr8	9074801	9075000	+	0	NA	intron (NM_001354638, intron 6 of 7)	intron (NM_001354638, intron 6 of 7)	-16270	NR_145772	109616996		NR_145772		SNORD3I	-	small nucleolar RNA, C/D box 3I	snoRNA
204193	chr7	2497051	2497350	+	0	NA	Intergenic	Intergenic	-15329	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
237594	chrX	123864401	123864900	+	0	NA	intron (NM_001378590, intron 1 of 6)	(GT)n|Simple_repeat|Simple_repeat	4200	NM_001378590	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
151666	chr22	17090971	17091130	+	0	NA	intron (NM_014339, intron 1 of 12)	HAL1|LINE|L1	6050	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
22700	chr1	223991271	223991430	+	0	NA	intron (NR_132119, intron 1 of 10)	AluJb|SINE|Alu	1294	NR_132119	441124		NR_132119		GTF2IP20	-	general transcription factor IIi pseudogene 20	pseudo
153857	chr22	30223321	30223880	+	0	NA	Intergenic	Intergenic	-15594	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
37291	chr11	14724671	14725030	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	81046	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
54419	chr12	90945151	90945250	+	0	NA	intron (NR_038868, intron 3 of 4)	intron (NR_038868, intron 3 of 4)	9976	NM_152638	196477		NM_152638	ENSG00000197651	CCER1	C12orf12	coiled-coil glutamate rich protein 1	protein-coding
97392	chr17	43364701	43365030	+	0	NA	Intergenic	AluJb|SINE|Alu	24033	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
125939	chr2	25170901	25171150	+	0	NA	Intergenic	Intergenic	-2174	NM_001035256	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
50708	chr12	48932601	48933140	+	0	NA	Intergenic	Intergenic	-7323	NM_001143782	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
51006	chr12	49672621	49673030	+	0	NA	intron (NM_175736, intron 1 of 25)	intron (NM_175736, intron 1 of 25)	34580	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
150563	chr21	43103221	43103930	+	0	NA	intron (NM_001025204, intron 2 of 8).2	intron (NM_001025204, intron 2 of 8).2	3995	NM_006758	7307		NM_006758	ENSG00000160201	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
19449	chr1	174799521	174800750	+	0	NA	5' UTR (NM_001243765, exon 1 of 9)	5' UTR (NM_001243765, exon 1 of 9)	397	NM_001366454	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
47679	chr12	6348101	6348300	+	0	NA	exon (NM_001038, exon 13 of 13)	exon (NM_001038, exon 13 of 13)	-6124	NM_001346092	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
229181	chr9	114596801	114597400	+	0	NA	intron (NM_004888, intron 2 of 2)	AluY|SINE|Alu	9331	NM_004888	9550		NM_004888	ENSG00000136888	ATP6V1G1	ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10	ATPase H+ transporting V1 subunit G1	protein-coding
4040	chr1	18953171	18953330	+	0	NA	intron (NM_001136265, intron 1 of 8)	MIR3|SINE|MIR	3426	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
206256	chr7	29275651	29276180	+	0	NA	intron (NM_001293072, intron 1 of 12)	intron (NM_001293072, intron 1 of 12)	-66945	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
973	chr1	1796301	1796980	+	0	NA	intron (NM_001282539, intron 6 of 10)	intron (NM_001282539, intron 6 of 10)	-16609	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
48294	chr12	8956371	8956530	+	0	NA	intron (NR_137427, intron 1 of 2)	AluSx1|SINE|Alu	6406	NM_001329103	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
80945	chr16	3855471	3855630	+	0	NA	intron (NM_004380, intron 1 of 30)	AluSx|SINE|Alu	24570	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
225298	chr9	34546871	34547330	+	0	NA	Intergenic	Intergenic	-20912	NR_024369	415056		NR_024369	ENSG00000237159	CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
197452	chr6	75206071	75206430	+	0	NA	promoter-TSS (NM_004370)	promoter-TSS (NM_004370)	-197	NM_080645	1303		NM_004370	ENSG00000111799	COL12A1	BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2	collagen type XII alpha 1 chain	protein-coding
87173	chr16	69337721	69337980	+	0	NA	intron (NM_001374871, intron 1 of 3)	AluSc|SINE|Alu	-1662	NM_001199434	51388		NM_016101	ENSG00000132603	NIP7	CGI-37|HSPC031|KD93	nucleolar pre-rRNA processing protein NIP7	protein-coding
203434	chr7	350151	350630	+	0	NA	Intergenic	Intergenic	-29035	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
174518	chr4	40056501	40057400	+	0	NA	promoter-TSS (NM_018177)	promoter-TSS (NM_018177)	100	NM_001318359	55728		NM_018177	ENSG00000078177	N4BP2	B3BP	NEDD4 binding protein 2	protein-coding
60197	chr13	40394171	40394540	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	86651	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
37766	chr11	32121171	32121530	+	0	NA	Intergenic	L2|LINE|L2	22562	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
33564	chr10	119362271	119362630	+	0	NA	intron (NM_005308, intron 2 of 15)	intron (NM_005308, intron 2 of 15)	-15522	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
57731	chr12	122890001	122890850	+	0	NA	intron (NM_024667, intron 1 of 3)	AluJb|SINE|Alu	5699	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
158778	chr3	9417221	9417750	+	0	NA	intron (NM_001349451, intron 1 of 25)	AluY|SINE|Alu	19870	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
92500	chr17	8882701	8883280	+	0	NA	intron (NM_001142633, intron 15 of 18)	L2b|LINE|L2	-15313	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
55145	chr12	98646621	98647280	+	0	NA	intron (NM_013229, intron 1 of 26)	intron (NM_013229, intron 1 of 26)	1650	NM_181869	317		NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
88262	chr16	82672671	82672830	+	0	NA	intron (NM_001220488, intron 2 of 14)	intron (NM_001220488, intron 2 of 14)	-16181	NR_107025	102465863		NR_107025	ENSG00000277387	MIR8058	hsa-mir-8058	microRNA 8058	ncRNA
24829	chr10	336951	337250	+	0	NA	intron (NM_014974, intron 29 of 36)	intron (NM_014974, intron 29 of 36)	157106	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
199204	chr6	111788371	111788530	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-28533	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
190401	chr5	179806401	179807630	+	0	NA	promoter-TSS (NM_001142299)	promoter-TSS (NM_001142299)	6	NM_001142299	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
157443	chr22	45238901	45239100	+	0	NA	intron (NM_001009880, intron 1 of 9)	MIRb|SINE|MIR	1894	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
32305	chr10	102149401	102149600	+	0	NA	intron (NM_015062, intron 13 of 13)	AluSx3|SINE|Alu	-2676	NM_001284388	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
185041	chr5	115640201	115640400	+	0	NA	Intergenic	LTR81C|LTR|Gypsy	-14121	NM_001164469	100302736		NM_001164468	ENSG00000251201	TMED7-TICAM2	MyD88-4|TICAM-2|TICAM2|TIRAP3|TIRP|TRAM	TMED7-TICAM2 readthrough	protein-coding
84045	chr16	29574251	29574350	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSx3|SINE|Alu	20792	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
56768	chr12	120164171	120164530	+	0	NA	exon (NM_006836, exon 18 of 58)	exon (NM_006836, exon 18 of 58)	-8851	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
75505	chr15	66401671	66402180	+	0	NA	intron (NM_002755, intron 1 of 10)	L2c|LINE|L2	15013	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
31333	chr10	92901821	92902500	+	0	NA	intron (NM_001319200, intron 5 of 17)	HAL1|LINE|L1	53640	NM_001319195	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
56539	chr12	116820371	116820530	+	0	NA	intron (NM_001382266, intron 7 of 10)	MER33|DNA|hAT-Charlie	60991	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
143307	chr20	25321451	25321950	+	0	NA	intron (NM_001042472, intron 3 of 12)	intron (NM_001042472, intron 3 of 12)	69135	NM_015600	26090		NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12	abhydrolase domain containing 12, lysophospholipase	protein-coding
118326	chr19	35554051	35554350	+	0	NA	intron (NM_000704, intron 16 of 21)	intron (NM_000704, intron 16 of 21)	-8171	NR_038396	100506469		NR_038396	ENSG00000236144	TMEM147-AS1	-	TMEM147 antisense RNA 1	ncRNA
88591	chr16	85581101	85581300	+	0	NA	Intergenic	Intergenic	-30209	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
21100	chr1	203351171	203351580	+	0	NA	promoter-TSS (NM_002023)	promoter-TSS (NM_002023)	-253	NM_002023	2331		NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding
93394	chr17	18318951	18319380	+	0	NA	intron (NM_144775, intron 1 of 1)	intron (NM_144775, intron 1 of 1)	3872	NM_144775	140775		NM_144775	ENSG00000176994	SMCR8	DENND8A	SMCR8-C9orf72 complex subunit	protein-coding
44550	chr11	108123971	108124530	+	0	NA	intron (NM_000019, intron 1 of 11)	LTR33A_|LTR|ERVL	2683	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
21468	chr1	205593421	205594280	+	0	NA	intron (NM_181644, intron 7 of 9)	intron (NM_181644, intron 7 of 9)	-24545	NR_152721	284578		NR_027086		MFSD4A-AS1	-	MFSD4A antisense RNA 1	ncRNA
124699	chr2	3577871	3578230	+	0	NA	intron (NM_001011, intron 5 of 6)	intron (NM_001011, intron 5 of 6)	2790	NM_001011	6201		NM_001011	ENSG00000171863	RPS7	DBA8|S7|eS7	ribosomal protein S7	protein-coding
101827	chr17	73641951	73642250	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	2345	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
231829	chr9	132583101	132583500	+	0	NA	intron (NM_020064, intron 1 of 2)	intron (NM_020064, intron 1 of 2)	694	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
40483	chr11	64244751	64246100	+	0	NA	promoter-TSS (NR_135087)	promoter-TSS (NR_135087)	-441	NR_135087	105369340		NR_135086	ENSG00000256940	PPP1R14B-AS1	-	PPP1R14B antisense RNA 1	ncRNA
67112	chr14	68404471	68405030	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	224037	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
170822	chr3	189641971	189642130	+	0	NA	intron (NM_001329144, intron 1 of 11)	intron (NM_001329144, intron 1 of 11)	10661	NM_001329144	8626		NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding
14139	chr1	121010371	121010530	+	0	NA	intron (NR_135813, intron 2 of 2)	intron (NR_135813, intron 2 of 2)	41717	NR_135813	101929798		NR_135813	ENSG00000290904	PDE4DIPP4	CH17-118O6.3	PDE4DIP pseudogene 4	pseudo
53300	chr12	64461701	64461900	+	0	NA	intron (NM_013254, intron 3 of 20)	MER77B|LTR|ERVL	9680	NM_013254	29110		NM_013254	ENSG00000183735	TBK1	FTDALS4|IIAE8|NAK|T2K	TANK binding kinase 1	protein-coding
181662	chr5	50427621	50427900	+	0	NA	intron (NM_198449, intron 2 of 8)	intron (NM_198449, intron 2 of 8)	13528	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
36050	chr11	2937251	2938400	+	0	NA	Intergenic	Intergenic	-8405	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
114121	chr19	11154671	11154830	+	0	NA	intron (NM_001317033, intron 1 of 4)	L1MB3|LINE|L1	1032	NM_001317033								
107574	chr18	48836251	48836830	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	106267	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
202726	chr6	158909921	158911000	+	0	NA	TTS (NR_160977)	TTS (NR_160977)	21983	NR_160979	100130967		NM_001195032	ENSG00000203711	LINC02901	C6orf99	long intergenic non-protein coding RNA 2901	ncRNA
127485	chr2	42243551	42243900	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-73494	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
134173	chr2	134258471	134259230	+	0	NA	intron (NM_001371457, intron 2 of 16)	intron (NM_001371457, intron 2 of 16)	4778	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
60029	chr13	32590221	32590730	+	0	NA	intron (NM_015032, intron 1 of 34)	intron (NM_015032, intron 1 of 34)	4023	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
213097	chr7	131115371	131115630	+	0	NA	intron (NM_001145354, intron 1 of 18)	L2b|LINE|L2	5406	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
226880	chr9	78212971	78213130	+	0	NA	Intergenic	Intergenic	-23025	NM_001098802	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
116857	chr19	18610171	18610700	+	0	NA	Intergenic	Intergenic	-2435	NM_012109	25789		NM_012109	ENSG00000105696	TMEM59L	BSMAP|C19orf4	transmembrane protein 59 like	protein-coding
164722	chr3	68090251	68090900	+	0	NA	intron (NM_213609, intron 2 of 4)	intron (NM_213609, intron 2 of 4)	86328	NM_213609	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
46637	chr11	128685851	128686250	+	0	NA	promoter-TSS (NM_001271012)	promoter-TSS (NM_001271012)	-485	NM_001271012	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
47902	chr12	6748751	6749150	+	0	NA	exon (NM_005439, exon 8 of 9)	exon (NM_005439, exon 8 of 9)	3966	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
165519	chr3	100395451	100395930	+	0	NA	intron (NM_014820, intron 1 of 11)	intron (NM_014820, intron 1 of 11)	5399	NM_014820	9868		NM_014820	ENSG00000154174	TOMM70	TOMM70A|Tom70	translocase of outer mitochondrial membrane 70	protein-coding
101545	chr17	67995371	67996950	+	0	NA	exon (NM_001382359, exon 1 of 4)	exon (NM_001382359, exon 1 of 4)	309	NM_001382359	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
32456	chr10	102638351	102638450	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6079	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
47371	chr12	2460151	2460350	+	0	NA	intron (NM_199460, intron 5 of 49)	MLT1I|LTR|ERVL-MaLR	190474	NR_046769	100874370		NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
127618	chr2	43050451	43050900	+	0	NA	Intergenic	Intergenic	-11132	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
179611	chr4	185587271	185588030	+	0	NA	exon (NM_001145673, exon 23 of 23)	exon (NM_001145673, exon 23 of 23)	-52092	NM_001257962	27295		NM_014476	ENSG00000154553	PDLIM3	ALP	PDZ and LIM domain 3	protein-coding
41810	chr11	66960551	66960850	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2317	NM_001040716	5091		NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
135986	chr2	172172501	172173130	+	0	NA	Intergenic	CpG	69809	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
156972	chr22	42441971	42442130	+	0	NA	Intergenic	AluSp|SINE|Alu	-4064	NM_001371362	150372		NM_145912	ENSG00000235568	NFAM1	CNAIP	NFAT activating protein with ITAM motif 1	protein-coding
1075	chr1	1921821	1922430	+	0	NA	3' UTR (NM_001304360, exon 39 of 39)	3' UTR (NM_001304360, exon 39 of 39)	-2846	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
123025	chr19	51126221	51126480	+	0	NA	intron (NM_014441, intron 3 of 6)	intron (NM_014441, intron 3 of 6)	1444	NM_014441	27180		NM_014441	ENSG00000129450	SIGLEC9	CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9	sialic acid binding Ig like lectin 9	protein-coding
266	chr1	926471	926630	+	0	NA	promoter-TSS (NR_168405)	promoter-TSS (NR_168405)	819	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
59480	chr13	26255771	26256180	+	0	NA	intron (NM_001260, intron 1 of 12)	intron (NM_001260, intron 1 of 12)	1846	NM_001318368	1024		NM_001260	ENSG00000132964	CDK8	IDDHBA|K35	cyclin dependent kinase 8	protein-coding
52594	chr12	56201001	56201400	+	0	NA	TTS (NR_040053)	TTS (NR_040053)	-11717	NM_139067	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
195667	chr6	38161801	38162000	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-319696	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
129715	chr2	70887321	70887930	+	0	NA	promoter-TSS (NR_126384)	promoter-TSS (NR_126384)	-246	NR_126384	104355141		NR_126384	ENSG00000237751	LINC01143	-	long intergenic non-protein coding RNA 1143	ncRNA
211226	chr7	102636871	102637500	+	0	NA	3' UTR (NM_001114403, exon 6 of 6)	3' UTR (NM_001114403, exon 6 of 6)	5606	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
208843	chr7	73699351	73699450	+	0	NA	3' UTR (NM_004603, exon 10 of 10)	3' UTR (NM_004603, exon 10 of 10)	-11917	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
96859	chr17	42024571	42025450	+	0	NA	TTS (NM_001378270)	TTS (NM_001378270)	4920	NM_001144929	28511		NM_017595	ENSG00000168256	NKIRAS2	KBRAS2|kappaB-Ras2	NFKB inhibitor interacting Ras like 2	protein-coding
64929	chr14	35800651	35800750	+	0	NA	intron (NM_014990, intron 1 of 40)	L1MA4A|LINE|L1	8595	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
188578	chr5	157148301	157149300	+	0	NA	Intergenic	Alu|SINE|Alu	-5935	NM_004270	9443		NM_004270	ENSG00000155868	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
131844	chr2	98682101	98682300	+	0	NA	intron (NM_012214, intron 2 of 15)	AluSp|SINE|Alu	-18727	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
225266	chr9	34375921	34377800	+	0	NA	promoter-TSS (NM_020702)	promoter-TSS (NM_020702)	38	NM_020702	57462		NM_020702	ENSG00000164976	MYORG	IBGC7|KIAA1161|NET37	myogenesis regulating glycosidase (putative)	protein-coding
169381	chr3	160448871	160450530	+	0	NA	promoter-TSS (NM_173084)	promoter-TSS (NM_173084)	86	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
31654	chr10	97406821	97407780	+	0	NA	Intergenic	Intergenic	-5930	NM_001145114	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
177599	chr4	120977601	120977800	+	0	NA	Intergenic	L2b|LINE|L2	-54974	NM_001300823	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
160430	chr3	28309451	28310050	+	0	NA	intron (NM_001331186, intron 3 of 4)	L2c|LINE|L2	-38971	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
54884	chr12	95815671	95815830	+	0	NA	intron (NR_135016, intron 1 of 1)	intron (NR_135016, intron 1 of 1)	12653	NR_135016	105369920		NR_135016	ENSG00000258292	LINC02410	-	long intergenic non-protein coding RNA 2410	ncRNA
91087	chr17	3534501	3536080	+	0	NA	intron (NM_145068, intron 7 of 17)	(CCTTCCT)n|Simple_repeat|Simple_repeat	-21438	NM_001321337	84690		NM_032598	ENSG00000141255	SPATA22	NYD-SP20|NYDSP20	spermatogenesis associated 22	protein-coding
144032	chr20	33515501	33515930	+	0	NA	intron (NM_001032999, intron 1 of 10)	AluSg|SINE|Alu	25619	NM_001032999	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
137340	chr2	196139801	196140900	+	0	NA	intron (NM_004226, intron 6 of 7)	intron (NM_004226, intron 6 of 7)	31228	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
236470	chrX	71608201	71608500	+	0	NA	intron (NM_052957, intron 9 of 12)	AluY|SINE|Alu	10161	NM_001142797	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
175360	chr4	69881251	69881380	+	0	NA	Intergenic	Intergenic	-21170	NM_005420	6783		NM_005420	ENSG00000109193	SULT1E1	EST|EST-1|ST1E1|STE	sulfotransferase family 1E member 1	protein-coding
12962	chr1	110884351	110884650	+	0	NA	intron (NM_001040033, intron 2 of 8)	L1ME1|LINE|L1	11352	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
28610	chr10	58212701	58213300	+	0	NA	intron (NM_152230, intron 4 of 5)	intron (NM_152230, intron 4 of 5)	54894	NM_152230	253430		NM_152230	ENSG00000151151	IPMK	-	inositol polyphosphate multikinase	protein-coding
79271	chr16	523201	523850	+	0	NA	TTS (NM_014700)	TTS (NM_014700)	3882	NR_024121	64493		NR_024121		LINC00235	C16orf10|LA16c-356B8.1|NCRNA00235	long intergenic non-protein coding RNA 235	ncRNA
162891	chr3	49389221	49389600	+	0	NA	intron (NM_001313943, intron 1 of 5)	intron (NM_001313943, intron 1 of 5)	22566	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
137875	chr2	200837171	200837530	+	0	NA	Intergenic	AluSx3|SINE|Alu	24964	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
103410	chr17	78188321	78188950	+	0	NA	intron (NM_001010982, intron 1 of 10)	AluY|SINE|Alu	1318	NR_027083	125061		NM_001010982	ENSG00000183077	AFMID	FKF|KF|KFA	arylformamidase	protein-coding
148476	chr20	64047701	64048530	+	0	NA	3' UTR (NM_018419, exon 2 of 2)	3' UTR (NM_018419, exon 2 of 2)	1524	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
113294	chr19	8557201	8557400	+	0	NA	intron (NM_012335, intron 1 of 27)	AluJr|SINE|Alu	20142	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
153214	chr22	23911871	23912230	+	0	NA	intron (NR_003082, intron 4 of 4)	LTR46|LTR|ERV1	-13120	NR_038911	284889		NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA
197920	chr6	89474121	89475000	+	0	NA	intron (NM_014942, intron 1 of 15)	AluY|SINE|Alu	41382	NM_014942	22881		NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
225784	chr9	37472071	37472500	+	0	NA	Intergenic	L1MEc|LINE|L1	-6835	NM_014872	9925		NM_014872	ENSG00000168795	ZBTB5	-	zinc finger and BTB domain containing 5	protein-coding
111274	chr19	3547371	3548430	+	0	NA	exon (NM_001287529, exon 4 of 10)	exon (NM_001287529, exon 4 of 10)	8743	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
169887	chr3	177538371	177538530	+	0	NA	intron (NR_047568, intron 1 of 3)	intron (NR_047568, intron 1 of 3)	96529	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
85762	chr16	56866901	56867880	+	0	NA	intron (NM_001126107, intron 2 of 25)	intron (NM_001126107, intron 2 of 25)	2183	NM_001126108	6559		NM_000339	ENSG00000070915	SLC12A3	NCC|NCCT|TSC	solute carrier family 12 member 3	protein-coding
6193	chr1	27448951	27449250	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	41067	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
102673	chr17	76092921	76093180	+	0	NA	intron (NM_001145297, intron 6 of 19)	intron (NM_001145297, intron 6 of 19)	5026	NR_106928	102466753		NR_106928	ENSG00000275360	MIR6868	hsa-mir-6868	microRNA 6868	ncRNA
5215	chr1	24981321	24982330	+	0	NA	Intergenic	MIRc|SINE|MIR	-16815	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
209931	chr7	92574221	92574780	+	0	NA	intron (NM_001040057, intron 9 of 11)	L1MB5|LINE|L1	15549	NM_001288584	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
181916	chr5	54753051	54753550	+	0	NA	Intergenic	Intergenic	-9042	NR_104658	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
82836	chr16	21502101	21502930	+	0	NA	promoter-TSS (NR_027155)	promoter-TSS (NR_027155)	-234	NR_027155	100271836		NR_027155	ENSG00000180747	SMG1P3	-	SMG1 pseudogene 3	pseudo
83356	chr16	25060651	25062030	+	0	NA	Intergenic	AluJb|SINE|Alu	-5547	NR_135196	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
222222	chr8	133074621	133075830	+	0	NA	intron (NM_001045556, intron 1 of 8)	intron (NM_001045556, intron 1 of 8)	-14871	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
134720	chr2	144519021	144519430	+	0	NA	promoter-TSS (NR_040248)	promoter-TSS (NR_040248)	-389	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
208221	chr7	65258251	65258550	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-115399	NM_001287532	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
1027	chr1	1870851	1870950	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSx|SINE|Alu	20187	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
45794	chr11	119320901	119321850	+	0	NA	Intergenic	CpG	-4245	NM_006500	4162		NM_006500	ENSG00000076706	MCAM	CD146|HEMCAM|METCAM|MUC18|MelCAM	melanoma cell adhesion molecule	protein-coding
162397	chr3	48187871	48189700	+	0	NA	promoter-TSS (NM_201567)	promoter-TSS (NM_201567)	-368	NM_201567	993		NM_001789	ENSG00000164045	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
117245	chr19	19435901	19436300	+	0	NA	TTS (NR_030370)	TTS (NR_030370)	1037	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
31215	chr10	91407771	91408130	+	0	NA	intron (NR_024467, intron 3 of 4)	intron (NR_024467, intron 3 of 4)	-1285	NM_001348365	143279		NM_173497	ENSG00000165338	HECTD2	-	HECT domain E3 ubiquitin protein ligase 2	protein-coding
79751	chr16	1348751	1349050	+	0	NA	TTS (NM_001001410)	TTS (NM_001001410)	2978	NM_001001410	115939		NM_001001410	ENSG00000007520	TSR3	C16orf42|HsTsr3	TSR3 ribosome maturation factor	protein-coding
71373	chr14	105498601	105499850	+	0	NA	TTS (NM_001134875)	TTS (NM_001134875)	7976	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
71425	chr14	105589171	105589880	+	0	NA	Intergenic	(CCAGC)n|Simple_repeat|Simple_repeat	-31591	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
188986	chr5	163564351	163565150	+	0	NA	Intergenic	Intergenic	59131	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
93024	chr17	17252321	17252580	+	0	NA	intron (NM_003653, intron 9 of 11)	MER20|DNA|hAT-Charlie	-15282	NM_144606	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
172799	chr4	2958501	2958700	+	0	NA	intron (NM_001291978, intron 1 of 17)	intron (NM_001291978, intron 1 of 17)	4806	NM_001291978	8602		NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
29907	chr10	73160851	73161150	+	0	NA	intron (NR_024203, intron 1 of 11)	L1M3|LINE|L1	7008	NM_007265	11319		NM_007265	ENSG00000122882	ECD	GCR2|HSGT1|SGT1	ecdysoneless cell cycle regulator	protein-coding
167342	chr3	128753551	128754550	+	0	NA	intron (NM_004637, intron 1 of 5)	L1M4c|LINE|L1	27867	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
102774	chr17	76293221	76293680	+	0	NA	exon (NM_032134, exon 4 of 19)	exon (NM_032134, exon 4 of 19)	14230	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
207526	chr7	44810501	44811130	+	0	NA	Intergenic	AluSq2|SINE|Alu	14134	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
199810	chr6	127475621	127475880	+	0	NA	exon (NM_001012279, exon 6 of 12)	exon (NM_001012279, exon 6 of 12)	-16361	NM_014702	9729		NM_014702	ENSG00000189367	KIAA0408	-	KIAA0408	protein-coding
221405	chr8	123518701	123519130	+	0	NA	intron (NM_148177, intron 1 of 5)	AluJo|SINE|Alu	13228	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
228608	chr9	105246671	105247330	+	0	NA	intron (NM_001330731, intron 1 of 15)	intron (NM_001330731, intron 1 of 15)	2349	NM_080546	23446		NM_022109	ENSG00000070214	SLC44A1	CD92|CDW92|CHTL1|CONATOC|CTL1	solute carrier family 44 member 1	protein-coding
135578	chr2	165903971	165904330	+	0	NA	intron (NM_024753, intron 19 of 28)	intron (NM_024753, intron 19 of 28)	-29707	NR_038984	100506134		NR_038983		TTC21B-AS1	-	TTC21B antisense RNA 1	ncRNA
205762	chr7	23518921	23519430	+	0	NA	intron (NM_013293, intron 2 of 7)	AluSc5|SINE|Alu	12806	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
225683	chr9	36480821	36481280	+	0	NA	Intergenic	AluSx|SINE|Alu	-79852	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
130432	chr2	85398701	85399100	+	0	NA	intron (NM_001256140, intron 6 of 9)	MER91A|DNA|hAT-Tip100	10932	NM_001320732	822		NM_001747	ENSG00000042493	CAPG	AFCP|HEL-S-66|MCP	capping actin protein, gelsolin like	protein-coding
24595	chr1	246002471	246002650	+	0	NA	intron (NM_001375963, intron 5 of 11)	Alu|SINE|Alu	-14009	NM_001375966	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
1112	chr1	2053951	2054730	+	0	NA	intron (NM_002744, intron 1 of 17)	intron (NM_002744, intron 1 of 17)	3929	NM_002744	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
151859	chr22	18582551	18582850	+	0	NA	Intergenic	Intergenic	29219	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
28041	chr10	43252251	43252350	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	14765	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
110129	chr19	1595571	1596300	+	0	NA	Intergenic	L1MC4a|LINE|L1	-3070	NM_001281453	53615		NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
87008	chr16	68244471	68246500	+	0	NA	exon (NM_012320, exon 1 of 6)	exon (NM_012320, exon 1 of 6)	112	NM_012320	23659		NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	phospholipase A2 group XV	protein-coding
57120	chr12	121132371	121133370	+	0	NA	promoter-TSS (NR_033953)	promoter-TSS (NR_033953)	-6	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
227393	chr9	89521971	89522930	+	0	NA	Intergenic	Intergenic	-24337	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
211077	chr7	102477971	102479530	+	0	NA	intron (NM_006234, intron 1 of 3)	intron (NM_006234, intron 1 of 3)	172	NM_001371100	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
175736	chr4	77709401	77709600	+	0	NA	Intergenic	AluSx|SINE|Alu	103680	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
126031	chr2	25358401	25358600	+	0	NA	Intergenic	Intergenic	-15910	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
41458	chr11	66113071	66113750	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	43138	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
228958	chr9	113443101	113443330	+	0	NA	Intergenic	L1PA7|LINE|L1	-1515	NM_144488	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
116351	chr19	17865221	17865480	+	0	NA	Intergenic	AluJr|SINE|Alu	2762	NR_000012	26780		NR_000012	ENSG00000207166	SNORA68	RNU68|SNORA68A|U68	small nucleolar RNA, H/ACA box 68	snoRNA
224018	chr9	2850101	2850530	+	0	NA	Intergenic	LTR16B1|LTR|ERVL	-6220	NM_014878	9933		NM_014878	ENSG00000080608	PUM3	HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5	pumilio RNA binding family member 3	protein-coding
126304	chr2	27259671	27259900	+	0	NA	intron (NM_001318950, intron 2 of 8)	L2c|LINE|L2	3262	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
22885	chr1	225813351	225813650	+	0	NA	intron (NM_001378426, intron 2 of 9)	intron (NM_001378426, intron 2 of 9)	3376	NR_165624	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
76946	chr15	78093621	78093880	+	0	NA	intron (NM_001101404, intron 1 of 5)	intron (NM_001101404, intron 1 of 5)	1165	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
195305	chr6	36549471	36549630	+	0	NA	Intergenic	AluY|SINE|Alu	-2071	NM_001305102	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
124970	chr2	8829871	8830230	+	0	NA	intron (NR_145965, intron 1 of 29)	intron (NR_145965, intron 1 of 29)	7563	NM_001348740	57498		NM_020738	ENSG00000134313	KIDINS220	ARMS|SINO|VENARG	kinase D interacting substrate 220	protein-coding
14337	chr1	143968421	143969700	+	0	NA	intron (NR_144349, intron 1 of 3)	L1MB2|LINE|L1	2946	NM_001346070	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
24560	chr1	244904671	244904830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-40207	NM_031844	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
182443	chr5	62309371	62309600	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	3279	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
148449	chr20	64004901	64005100	+	0	NA	intron (NM_012469, intron 9 of 20)	intron (NM_012469, intron 9 of 20)	23868	NM_012469	24148		NM_012469	ENSG00000101161	PRPF6	ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6	pre-mRNA processing factor 6	protein-coding
226752	chr9	76302971	76303200	+	0	NA	intron (NM_001372043, intron 28 of 37)	intron (NM_001372043, intron 28 of 37)	91341	NM_018339	55312		NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
99332	chr17	49846221	49846530	+	0	NA	intron (NR_164135, intron 2 of 2)	AluJr|SINE|Alu	489	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
122947	chr19	50718301	50719100	+	0	NA	intron (NM_016148, intron 1 of 23)	CpG	1102	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
39231	chr11	57651571	57651730	+	0	NA	Intergenic	MLT2A2|LTR|ERVL	-1706	NM_001363487	219539		NM_145008	ENSG00000166793	YPEL4	-	yippee like 4	protein-coding
153800	chr22	29635651	29635950	+	0	NA	intron (NR_156186, intron 2 of 16)	intron (NR_156186, intron 2 of 16)	32167	NM_181829	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
227142	chr9	86284471	86284850	+	0	NA	Intergenic	L1MC1|LINE|L1	-2122	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
120691	chr19	45160121	45160380	+	0	NA	promoter-TSS (NM_198478)	promoter-TSS (NM_198478)	-100	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
59266	chr13	24162501	24162900	+	0	NA	TTS (NR_031753)	TTS (NR_031753)	284	NR_031753	100313842		NR_031753	ENSG00000252695	MIR2276	-	microRNA 2276	ncRNA
62985	chr13	112302271	112302700	+	0	NA	Intergenic	Intergenic	-10982	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
116678	chr19	18407501	18407700	+	0	NA	Intergenic	AluY|SINE|Alu	-9978	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
89385	chr16	88802051	88802590	+	0	NA	Intergenic	Intergenic	-1469	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
38864	chr11	47340971	47341330	+	0	NA	exon (NM_000256, exon 18 of 34)	exon (NM_000256, exon 18 of 34)	11552	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
69807	chr14	99206121	99206730	+	0	NA	intron (NM_022898, intron 2 of 2)	MER44B|DNA|TcMar-Tigger	65772	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
4863	chr1	23744971	23745130	+	0	NA	intron (NM_003198, intron 1 of 10)	intron (NM_003198, intron 1 of 10)	1684	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
112125	chr19	5601151	5601600	+	0	NA	intron (NM_014649, intron 11 of 20)	intron (NM_014649, intron 11 of 20)	21401	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
209759	chr7	87210601	87211980	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	8442	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
139757	chr2	229919721	229920800	+	0	NA	intron (NM_001348325, intron 1 of 42)	intron (NM_001348325, intron 1 of 42)	1419	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
101321	chr17	66664171	66664730	+	0	NA	intron (NM_002737, intron 5 of 16)	intron (NM_002737, intron 5 of 16)	-122622	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
194409	chr6	33029101	33030250	+	0	NA	Intergenic	Intergenic	-20084	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
167193	chr3	128242901	128243250	+	0	NA	intron (NM_021937, intron 1 of 6)	intron (NM_021937, intron 1 of 6)	-89161	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
110994	chr19	3037471	3038100	+	0	NA	intron (NM_001144761, intron 2 of 19)	MIR|SINE|MIR	-8171	NM_001144762	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
150914	chr21	44220351	44220910	+	0	NA	Intergenic	Intergenic	20313	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
11708	chr1	91864401	91865000	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	21451	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
70524	chr14	102362151	102363780	+	0	NA	promoter-TSS (NM_014844)	promoter-TSS (NM_014844)	24	NM_014844	9895		NM_014844	ENSG00000196663	TECPR2	HSAN9|KIAA0329|SPG49	tectonin beta-propeller repeat containing 2	protein-coding
143801	chr20	32460921	32461730	+	0	NA	intron (NM_080616, intron 2 of 7)	L2a|LINE|L2	22165	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
227099	chr9	85732171	85732330	+	0	NA	intron (NM_001330701, intron 1 of 25)	AluY|SINE|Alu	9704	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
10006	chr1	55200671	55201180	+	0	NA	intron (NM_015306, intron 1 of 67)	intron (NM_015306, intron 1 of 67)	14439	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
218374	chr8	43237821	43238330	+	0	NA	Intergenic	SAR|Satellite|Satellite	-54367	NM_001002920	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
171108	chr3	195507871	195508030	+	0	NA	Intergenic	AluJb|SINE|Alu	35375	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
210144	chr7	98230171	98230830	+	0	NA	intron (NM_015395, intron 15 of 25)	intron (NM_015395, intron 15 of 25)	19061	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
143665	chr20	31954001	31954200	+	0	NA	Intergenic	Intergenic	-2054	NM_030815	81572		NM_030815	ENSG00000088356	PDRG1	C20orf126|PDRG	p53 and DNA damage regulated 1	protein-coding
83198	chr16	23509871	23511350	+	0	NA	promoter-TSS (NM_015044)	promoter-TSS (NM_015044)	-116	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
30847	chr10	86521031	86522450	+	0	NA	promoter-TSS (NM_001318328)	promoter-TSS (NM_001318328)	44	NM_001318328	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
29336	chr10	69411271	69411430	+	0	NA	intron (NM_001057, intron 2 of 4)	LTR8|LTR|ERV1	5568	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
60399	chr13	40958421	40959400	+	0	NA	exon (NM_001145353, exon 2 of 8)	exon (NM_001145353, exon 2 of 8)	23372	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
196111	chr6	42374151	42375080	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	77436	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
138041	chr2	201404801	201405000	+	0	NA	intron (NM_015049, intron 3 of 15)	intron (NM_015049, intron 3 of 15)	46558	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
164895	chr3	71104951	71105250	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	25486	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
175113	chr4	54659571	54659730	+	0	NA	intron (NM_001385292, intron 1 of 20)	intron (NM_001385292, intron 1 of 20)	1693	NM_001093772	3815		NM_000222	ENSG00000157404	KIT	C-Kit|CD117|MASTC|PBT|SCFR	KIT proto-oncogene, receptor tyrosine kinase	protein-coding
11342	chr1	89598771	89599450	+	0	NA	Intergenic	Intergenic	33784	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
83891	chr16	28972251	28972550	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2378	NM_001142449	83985		NM_032038	ENSG00000169682	SPNS1	HSpin1|LAT|PP2030|SLC62A1|SLC63A1|SPIN1|SPINL|nrs	SPNS lysolipid transporter 1, lysophospholipid	protein-coding
127992	chr2	46942101	46943030	+	0	NA	promoter-TSS (NM_001171508)	promoter-TSS (NM_001171508)	-710	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
83405	chr16	27197221	27197580	+	0	NA	Intergenic	L2a|LINE|L2	-6126	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
2183	chr1	8524571	8524730	+	0	NA	intron (NM_012102, intron 8 of 23)	intron (NM_012102, intron 8 of 23)	-29737	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
113788	chr19	10555251	10555730	+	0	NA	intron (NM_023008, intron 16 of 18)	intron (NM_023008, intron 16 of 18)	3368	NR_031603	100302226		NR_031603	ENSG00000221410	MIR1238	MIRN1238|hsa-mir-1238	microRNA 1238	ncRNA
58693	chr12	132554121	132554380	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-27747	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
7179	chr1	32262301	32262500	+	0	NA	intron (NM_005356, intron 1 of 12)	AluSz|SINE|Alu	11135	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
14906	chr1	147104821	147105080	+	0	NA	intron (NR_103466, intron 4 of 5)	intron (NR_103466, intron 4 of 5)	9396	NR_103466	644861		NR_103466		NBPF13P	-	NBPF member 13, pseudogene	pseudo
4394	chr1	20941051	20941150	+	0	NA	TTS (NM_001198803)	TTS (NM_001198803)	47332	NR_031657	100302155		NR_031657	ENSG00000221808	MIR1256	MIRN1256|hsa-mir-1256	microRNA 1256	ncRNA
169506	chr3	169968371	169969100	+	0	NA	intron (NM_003262, intron 1 of 7)	intron (NM_003262, intron 1 of 7)	1928	NM_003262	7095		NM_003262	ENSG00000008952	SEC62	Dtrp1|HTP1|TLOC1|TP-1	SEC62 homolog, preprotein translocation factor	protein-coding
170795	chr3	189122651	189123400	+	0	NA	Intergenic	Intergenic	-48946	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
222197	chr8	133045471	133045630	+	0	NA	TTS (NR_107002)	TTS (NR_107002)	1031	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
89418	chr16	88888371	88889150	+	0	NA	intron (NM_175931, intron 4 of 10)	intron (NM_175931, intron 4 of 10)	5245	NR_135194	101927793		NR_135194	ENSG00000259881	LOC101927793	-	uncharacterized LOC101927793	ncRNA
231938	chr9	133123801	133124000	+	0	NA	intron (NM_001042368, intron 1 of 17)	(AC)n|Simple_repeat|Simple_repeat	-2660	NM_006266	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
56619	chr12	118182071	118182630	+	0	NA	intron (NM_001346497, intron 2 of 9)	MIRb|SINE|MIR	8185	NM_001346497	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
218241	chr8	42141301	42142750	+	0	NA	Intergenic	Intergenic	-10921	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
223577	chr8	144271721	144271980	+	0	NA	intron (NM_015201, intron 3 of 15)	intron (NM_015201, intron 3 of 15)	5397	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
238377	chrX	149936871	149937130	+	0	NA	intron (NM_001013845, intron 2 of 4)	intron (NM_001013845, intron 2 of 4)	1491	NM_001013845	541578		NM_001013845	ENSG00000197021	EOLA2	CXorf40B	endothelium and lymphocyte associated ASCH domain 2	protein-coding
108379	chr18	69469421	69469850	+	0	NA	promoter-TSS (NR_134579)	promoter-TSS (NR_134579)	-296	NR_134579	105372179		NR_134579	ENSG00000293054	LOC105372179	-	uncharacterized LOC105372179	ncRNA
23183	chr1	226885071	226885600	+	0	NA	intron (NM_012486, intron 5 of 12)	intron (NM_012486, intron 5 of 12)	14719	NM_000447	5664		NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2	protein-coding
15658	chr1	150874271	150874950	+	0	NA	intron (NM_001350224, intron 1 of 22)	AluJr|SINE|Alu	1989	NM_001197325	405		NM_001668	ENSG00000143437	ARNT	ARNT1|HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2	aryl hydrocarbon receptor nuclear translocator	protein-coding
127868	chr2	45777971	45778130	+	0	NA	intron (NM_005400, intron 1 of 14)	MIR3|SINE|MIR	126375	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
200999	chr6	139595271	139595430	+	0	NA	Intergenic	Intergenic	-120754	NR_033919	645434		NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA
226519	chr9	71887171	71887630	+	0	NA	intron (NM_016014, intron 1 of 4)	intron (NM_016014, intron 1 of 4)	23793	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
179861	chr5	543571	544930	+	0	NA	Intergenic	Intergenic	-8368	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
130997	chr2	87799601	87799800	+	0	NA	intron (NM_001382344, intron 8 of 22).2	intron (NM_001382344, intron 8 of 22).2	26067	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
12796	chr1	109793471	109794800	+	0	NA	Intergenic	Intergenic	-30212	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
42360	chr11	68614821	68615080	+	0	NA	non-coding (NR_147966, exon 26 of 26)	non-coding (NR_147966, exon 26 of 26)	-69594	NM_015973	51083		NM_015973	ENSG00000069482	GAL	ETL8|GAL-GMAP|GALN|GLNN|GMAP	galanin and GMAP prepropeptide	protein-coding
188882	chr5	159479051	159479300	+	0	NA	Intergenic	Intergenic	-12899	NR_027110	285627		NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
177708	chr4	122116701	122116900	+	0	NA	Intergenic	Intergenic	-35531	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
119754	chr19	41284521	41285400	+	0	NA	intron (NM_144732, intron 7 of 14)	AluYi6_4d|SINE|Alu	19879	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
132641	chr2	108721801	108722380	+	0	NA	intron (NM_006267, intron 1 of 28)	Charlie4z|DNA|hAT-Charlie	2608	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
129701	chr2	70656571	70657150	+	0	NA	TTS (NM_017488)	TTS (NM_017488)	-103034	NM_003236	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
45243	chr11	117979701	117980800	+	0	NA	Intergenic	Intergenic	-6144	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
149092	chr21	15826101	15826380	+	0	NA	exon (NM_013396, exon 13 of 24)	exon (NM_013396, exon 13 of 24)	96258	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
163120	chr3	50126251	50126350	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-25312	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
165880	chr3	106176351	106177300	+	0	NA	Intergenic	Intergenic	-307424	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
209512	chr7	76984271	76985900	+	0	NA	intron (NR_023383, intron 1 of 10)	intron (NR_023383, intron 1 of 10)	4263	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
183365	chr5	77180221	77180780	+	0	NA	intron (NM_001376066, intron 1 of 20)	CpG	196	NM_001376071	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
2709	chr1	10649101	10650030	+	0	NA	intron (NM_017766, intron 13 of 15)	intron (NM_017766, intron 13 of 15)	147081	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
64423	chr14	24185801	24186630	+	0	NA	intron (NM_024658, intron 10 of 29).2	intron (NM_024658, intron 10 of 29).2	2601	NM_024658	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
107225	chr18	36461851	36462150	+	0	NA	intron (NM_001281739, intron 3 of 23)	intron (NM_001281739, intron 3 of 23)	164287	NM_025135	80206		NM_025135	ENSG00000134775	FHOD3	CMH28|FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
44089	chr11	95704301	95704500	+	0	NA	Intergenic	Intergenic	85382	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
210775	chr7	100707651	100708050	+	0	NA	TTS (NM_005837)	TTS (NM_005837)	1729	NM_005837	10248		NM_005837	ENSG00000172336	POP7	0610037N12Rik|RPP2|RPP20	POP7 homolog, ribonuclease P/MRP subunit	protein-coding
64375	chr14	24139401	24139830	+	0	NA	TTS (NM_001281529)	TTS (NM_001281529)	1976	NM_001346877	51016		NM_016049	ENSG00000100908	EMC9	C14orf122|CGI-112|FAM158A	ER membrane protein complex subunit 9	protein-coding
42395	chr11	68963901	68964100	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	16986	NM_198923	116512		NM_198923	ENSG00000172938	MRGPRD	MRGD|TGR7	MAS related GPR family member D	protein-coding
34017	chr10	124704901	124706130	+	0	NA	intron (NR_120631, intron 1 of 1)	L2b|LINE|L2	1487	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
49147	chr12	14945221	14945480	+	0	NA	intron (NR_135637, intron 2 of 3)	intron (NR_135637, intron 2 of 3)	3546	NR_135637	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
161694	chr3	43483121	43483480	+	0	NA	intron (NM_001346467, intron 12 of 13)	intron (NM_001346467, intron 12 of 13)	-131338	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
181812	chr5	52742951	52743300	+	0	NA	Intergenic	HAL1|LINE|L1	-44791	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
149149	chr21	17796901	17797300	+	0	NA	exon (NM_001100420, exon 3 of 5)	exon (NM_001100420, exon 3 of 5)	-4591	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
68011	chr14	75088551	75089050	+	0	NA	intron (NM_001329238, intron 19 of 21)	intron (NM_001329238, intron 19 of 21)	19159	NM_024643	79696		NM_024643	ENSG00000119703	ZC2HC1C	C14orf140|FAM164C	zinc finger C2HC-type containing 1C	protein-coding
192419	chr6	24866321	24866600	+	0	NA	intron (NM_001286447, intron 6 of 13)	MER20|DNA|hAT-Charlie	10810	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
65163	chr14	49580821	49581230	+	0	NA	intron (NM_001030001, intron 2 of 2)	AluSp|SINE|Alu	5355	NM_001032	6235		NM_001032	ENSG00000213741	RPS29	DBA13|S29|uS14	ribosomal protein S29	protein-coding
187933	chr5	148957451	148958130	+	0	NA	Intergenic	Intergenic	104619	NR_030310	693169		NR_030310	ENSG00000207714	MIR584	MIRN584|hsa-mir-584	microRNA 584	ncRNA
221742	chr8	127732301	127733030	+	0	NA	intron (NR_117101, intron 1 of 1)	intron (NR_117101, intron 1 of 1)	1302	NR_117102	100270680		NR_117101	ENSG00000249375	CASC11	CARLO7|CARLo-7|LINC00990|MYMLR|TCONS_00014535	cancer susceptibility 11	ncRNA
119653	chr19	40819411	40820380	+	0	NA	Intergenic	Intergenic	-8795	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
4381	chr1	20734401	20734600	+	0	NA	Intergenic	AluSq|SINE|Alu	-1797	NM_001103161	400745		NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
4466	chr1	21348051	21348480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2761	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
17300	chr1	156445151	156445250	+	0	NA	Intergenic	AluJb|SINE|Alu	-15652	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
34834	chr11	304251	304350	+	0	NA	Intergenic	CpG	-3807	NM_006435	10581		NM_006435	ENSG00000185201	IFITM2	1-8D|DSPA2c	interferon induced transmembrane protein 2	protein-coding
217546	chr8	29336621	29337080	+	0	NA	3' UTR (NM_001394, exon 4 of 4)	3' UTR (NM_001394, exon 4 of 4)	11955	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
59806	chr13	30378271	30378430	+	0	NA	Intergenic	Intergenic	-4436	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
179955	chr5	783701	784100	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	829	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
40238	chr11	63593101	63593350	+	0	NA	intron (NM_007069, intron 2 of 3)	L2a|LINE|L2	21212	NM_007069	11145		NM_007069	ENSG00000176485	PLAAT3	AdPLA|FPLD9|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3	phospholipase A and acyltransferase 3	protein-coding
100092	chr17	58314671	58314830	+	0	NA	intron (NM_001261835, intron 16 of 31)	intron (NM_001261835, intron 16 of 31)	-10700	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
166266	chr3	112467821	112468350	+	0	NA	intron (NM_001085357, intron 3 of 3)	intron (NM_001085357, intron 3 of 3)	31387	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
39430	chr11	60900821	60901080	+	0	NA	intron (NM_014502, intron 8 of 15)	intron (NM_014502, intron 8 of 15)	5635	NM_014502	27339		NM_014502	ENSG00000110107	PRPF19	NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4	pre-mRNA processing factor 19	protein-coding
195817	chr6	41199921	41201180	+	0	NA	intron (NM_024807, intron 1 of 4)	intron (NM_024807, intron 1 of 4)	599	NM_024807	79865		NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
161793	chr3	45117751	45118630	+	0	NA	intron (NM_022842, intron 2 of 8)	MIR|SINE|MIR	28188	NM_022842	64866		NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
79063	chr16	150451	151050	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1894	NM_005332	3050		NM_005332	ENSG00000130656	HBZ	HBAZ|HBZ-T1|HBZ1	hemoglobin subunit zeta	protein-coding
119903	chr19	41570271	41571030	+	0	NA	intron (NM_001288773, intron 2 of 7)	intron (NM_001288773, intron 2 of 7)	-5516	NM_001290113	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
23728	chr1	232398871	232399030	+	0	NA	3' UTR (NM_020808, exon 23 of 23)	3' UTR (NM_020808, exon 23 of 23)	231183	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
69267	chr14	93057551	93057850	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	-9752	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
38204	chr11	36389951	36390500	+	0	NA	intron (NM_024841, intron 2 of 9)	L2b|LINE|L2	-10772	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
98974	chr17	48725521	48725850	+	0	NA	TTS (NM_001282276)	TTS (NM_001282276)	-1210	NR_036150	100422978		NR_036150	ENSG00000263602	MIR3185	-	microRNA 3185	ncRNA
125	chr1	502071	502530	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-6855	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
40989	chr11	65390671	65391200	+	0	NA	intron (NM_001300833, intron 3 of 9)	intron (NM_001300833, intron 3 of 9)	4298	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
30917	chr10	87092851	87093500	+	0	NA	intron (NM_001318905, intron 1 of 15)	intron (NM_001318905, intron 1 of 15)	912	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
178394	chr4	147532021	147532100	+	0	NA	intron (NR_045958, intron 3 of 6)	AluY|SINE|Alu	50963	NM_001354797	1909		NM_001957	ENSG00000151617	EDNRA	ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR	endothelin receptor type A	protein-coding
179605	chr4	185469151	185470270	+	0	NA	intron (NM_001145411, intron 2 of 5)	intron (NM_001145411, intron 2 of 5)	-1721	NR_133944	105377590		NR_133944		LOC105377590	-	uncharacterized LOC105377590	ncRNA
230147	chr9	127744751	127745100	+	0	NA	exon (NM_001142534, exon 5 of 10)	exon (NM_001142534, exon 5 of 10)	-9631	NM_001134430	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
5130	chr1	24889901	24890430	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	29251	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
100149	chr17	58530101	58530730	+	0	NA	promoter-TSS (NR_104196)	promoter-TSS (NR_104196)	-948	NR_037155	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
83502	chr16	27438971	27439630	+	0	NA	intron (NM_181078, intron 4 of 8)	intron (NM_181078, intron 4 of 8)	12029	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
3049	chr1	12156571	12156730	+	0	NA	Intergenic	AluJb|SINE|Alu	-10293	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
2310	chr1	9054601	9054800	+	0	NA	intron (NM_001328620, intron 3 of 11)	AluJo|SINE|Alu	14935	NM_001328620	6518		NM_003039	ENSG00000142583	SLC2A5	GLUT-5|GLUT5	solute carrier family 2 member 5	protein-coding
190415	chr5	179823271	179824850	+	0	NA	exon (NM_001142299, exon 4 of 9)	exon (NM_001142299, exon 4 of 9)	3155	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
135750	chr2	169573261	169574430	+	0	NA	promoter-TSS (NM_001281476)	promoter-TSS (NM_001281476)	20	NM_024622	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
129639	chr2	70140651	70141700	+	0	NA	Intergenic	Intergenic	-15859	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
67252	chr14	68987871	68988030	+	0	NA	TTS (NR_073422)	TTS (NR_073422)	8268	NR_073422	161159		NR_073422	ENSG00000259062	ACTN1-DT	ACTN1-AS1|C14orf84	ACTN1 divergent transcript	ncRNA
94496	chr17	29290551	29290650	+	0	NA	intron (NM_020772, intron 1 of 3)	AluSz|SINE|Alu	3548	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
18367	chr1	161310901	161311100	+	0	NA	Intergenic	AluJo|SINE|Alu	-1032	NM_001315491	4359		NM_000530	ENSG00000158887	MPZ	CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0	myelin protein zero	protein-coding
28530	chr10	50447771	50447930	+	0	NA	intron (NM_147156, intron 5 of 10)	MLT1M|LTR|ERVL-MaLR	176106	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
176160	chr4	83251151	83251750	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	33348	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
79609	chr16	1073721	1073980	+	0	NA	intron (NM_001172560, intron 1 of 1)	intron (NM_001172560, intron 1 of 1)	1094	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
156849	chr22	41978601	41979250	+	0	NA	intron (NM_145733, intron 1 of 10)	(GGA)n|Simple_repeat|Simple_repeat	1998	NM_019106	55964		NM_019106	ENSG00000100167	SEPTIN3	SEP3|SEPT3|bK250D10.3	septin 3	protein-coding
37781	chr11	32420751	32421430	+	0	NA	intron (NR_160306, intron 3 of 9)	intron (NR_160306, intron 3 of 9)	9723	NM_001198552	7490		NM_000378	ENSG00000184937	WT1	AWT1|GUD|NPHS4|WAGR|WIT-2|WT-1|WT33	WT1 transcription factor	protein-coding
233406	chr9	137568001	137568400	+	0	NA	intron (NM_001346386, intron 4 of 7)	intron (NM_001346386, intron 4 of 7)	10392	NM_001346373	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
95954	chr17	39056401	39057400	+	0	NA	promoter-TSS (NR_036551)	promoter-TSS (NR_036551)	-119	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
222008	chr8	130021901	130022750	+	0	NA	Intergenic	AluJb|SINE|Alu	-5196	NM_001353269	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
106632	chr18	22406071	22406700	+	0	NA	Intergenic	L1P3|LINE|L1	11530	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
72126	chr15	28973971	28974830	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	-21127	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
171097	chr3	195499721	195499980	+	0	NA	Intergenic	L1MC1|LINE|L1	43475	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
189075	chr5	170277801	170279950	+	0	NA	intron (NM_005565, intron 3 of 20)	intron (NM_005565, intron 3 of 20)	18902	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
98627	chr17	47803921	47804200	+	0	NA	Intergenic	Intergenic	17734	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
71522	chr14	106153521	106154000	+	0	NA	Intergenic	Intergenic	-133914	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
190688	chr6	147501	147930	+	0	NA	intron (NR_109817, intron 1 of 2)	(CTAACC)n|Simple_repeat|Simple_repeat	444	NR_109817	107105278		NR_109817		SEPTIN14P6	C6orf88|LINC00266-3|NCRNA00266-3|NCRNA00266C|SEPT14P6|dJ24O22.2	septin 14 pseudogene 6	pseudo
193993	chr6	31772291	31773380	+	0	NA	intron (NM_025258, intron 7 of 16).6	AluSp|SINE|Alu	4493	NM_025258	80737		NM_025258	ENSG00000204396	VWA7	C6orf27|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding
166298	chr3	112559421	112559980	+	0	NA	intron (NM_022488, intron 1 of 11)	L2a|LINE|L2	-1620	NM_001348906	55032		NM_017945	ENSG00000138459	SLC35A5	-	solute carrier family 35 member A5	protein-coding
127437	chr2	42171551	42172250	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-1669	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
111341	chr19	3646921	3647530	+	0	NA	intron (NM_001300849, intron 10 of 16)	intron (NM_001300849, intron 10 of 16)	-20410	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
131277	chr2	96093101	96093500	+	0	NA	Intergenic	Intergenic	23271	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
201279	chr6	144286001	144287050	+	0	NA	Intergenic	CpG	-5212	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
139328	chr2	219556151	219556250	+	0	NA	exon (NM_001173431, exon 14 of 14)	exon (NM_001173431, exon 14 of 14)	-7053	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
102145	chr17	75092821	75093080	+	0	NA	intron (NM_001369668, intron 1 of 5)	intron (NM_001369668, intron 1 of 5)	4996	NM_004695	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
20579	chr1	198741801	198742300	+	0	NA	intron (NM_002838, intron 24 of 32)	A-rich|Low_complexity|Low_complexity	103010	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
67434	chr14	70645551	70645980	+	0	NA	intron (NM_015351, intron 1 of 2)	intron (NM_015351, intron 1 of 2)	3849	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
92229	chr17	7897801	7898430	+	0	NA	intron (NM_001005271, intron 12 of 39)	intron (NM_001005271, intron 12 of 39)	-8008	NR_003000	677763		NR_003000	ENSG00000252835	SCARNA21	ACA68|SCARNA21A	small Cajal body-specific RNA 21	ncRNA
30725	chr10	83871501	83871800	+	0	NA	Intergenic	Intergenic	-194561	NR_134317	105378397		NR_134317	ENSG00000233945	LINC02650	-	long intergenic non-protein coding RNA 2650	ncRNA
127896	chr2	46229451	46230480	+	0	NA	Intergenic	(CTCC)n|Simple_repeat|Simple_repeat	-67442	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
238520	chrX	153688951	153689250	+	0	NA	promoter-TSS (NM_001142806)	promoter-TSS (NM_001142806)	-411	NM_001142806	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
223320	chr8	143818771	143819680	+	0	NA	intron (NM_001362897, intron 5 of 11)	intron (NM_001362897, intron 5 of 11)	-3452	NM_015356	23513		NM_015356	ENSG00000180900	SCRIB	CRIB1|SCRB1|SCRIB1|Vartul|oSCRIB	scribble planar cell polarity protein	protein-coding
24492	chr1	244395151	244396150	+	0	NA	Intergenic	Intergenic	43015	NM_001276349	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
146526	chr20	49937971	49938350	+	0	NA	intron (NM_018683, intron 1 of 5)	intron (NM_018683, intron 1 of 5)	1763	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
36589	chr11	6710071	6710230	+	0	NA	Intergenic	L1MA5|LINE|L1	11729	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
46517	chr11	128451371	128451930	+	0	NA	Intergenic	Intergenic	70660	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
202995	chr6	162829151	162829880	+	0	NA	intron (NM_001080378, intron 3 of 5)	intron (NM_001080378, intron 3 of 5)	101545	NM_001080379	135138		NM_152410	ENSG00000112530	PACRG	BUG21|GLUP|HAK005771|PACRG2.1|PARK2CRG|pf12	parkin coregulated	protein-coding
76816	chr15	77083571	77084430	+	0	NA	Intergenic	Intergenic	-12891	NM_198902	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
37992	chr11	35043851	35044230	+	0	NA	Intergenic	MER57C2|LTR|ERV1	93992	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
231074	chr9	129667801	129668000	+	0	NA	intron (NM_016307, intron 1 of 3)	intron (NM_016307, intron 1 of 3)	2253	NM_016307	51450		NM_016307	ENSG00000167157	PRRX2	PMX2|PRX2	paired related homeobox 2	protein-coding
108073	chr18	59903271	59903430	+	0	NA	3' UTR (NM_001382615, exon 3 of 3)	3' UTR (NM_001382615, exon 3 of 3)	3354	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
37823	chr11	33128301	33128500	+	0	NA	intron (NM_001326, intron 3 of 20)	intron (NM_001326, intron 3 of 20)	33080	NM_001326	1479		NM_001326	ENSG00000176102	CSTF3	CSTF-77	cleavage stimulation factor subunit 3	protein-coding
200124	chr6	130218021	130219130	+	0	NA	intron (NM_001258275, intron 3 of 13)	intron (NM_001258275, intron 3 of 13)	-2690	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
180257	chr5	1666851	1667700	+	0	NA	Intergenic	CpG	-33270	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
219302	chr8	70069121	70069850	+	0	NA	exon (NM_024504, exon 2 of 8)	exon (NM_024504, exon 2 of 8)	1767	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
18678	chr1	167262251	167262350	+	0	NA	intron (NM_001365848, intron 2 of 17)	FAM|SINE|Alu	41414	NM_002697	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
186428	chr5	135916551	135917050	+	0	NA	Intergenic	Intergenic	-13497	NR_152420	26223		NM_012159		FBXL21P	FBL3B|FBXL21|FBXL3B|FBXL3P|Fbl21	F-box and leucine rich repeat protein 21, pseudogene	pseudo
173226	chr4	6912321	6912850	+	0	NA	intron (NM_020773, intron 1 of 13)	intron (NM_020773, intron 1 of 13)	2759	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
13731	chr1	116807471	116807850	+	0	NA	Intergenic	Intergenic	53230	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
237045	chrX	103248621	103248900	+	0	NA	Intergenic	Intergenic	6395	NM_153333	90843		NM_153333	ENSG00000180964	TCEAL8	WEX3	transcription elongation factor A like 8	protein-coding
212779	chr7	130057071	130057230	+	0	NA	Intergenic	AluJo|SINE|Alu	-5699	NM_001282191	51530		NM_016478	ENSG00000091732	ZC3HC1	HSPC216|NIPA	zinc finger C3HC-type containing 1	protein-coding
10344	chr1	64922221	64922850	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	44014	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
51383	chr12	51875121	51875630	+	0	NA	Intergenic	Intergenic	-12728	NM_182608	341405		NM_182608	ENSG00000167612	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
41940	chr11	67305951	67306050	+	0	NA	intron (NM_017857, intron 3 of 13)	(A)n|Simple_repeat|Simple_repeat	2470	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
100176	chr17	58633471	58634030	+	0	NA	intron (NM_198393, intron 2 of 32)	AluSg|SINE|Alu	58295	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
73790	chr15	46312171	46312400	+	0	NA	Intergenic	Intergenic	607090	NR_135680	105370802		NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA
200670	chr6	137213621	137213950	+	0	NA	intron (NM_000416, intron 1 of 6)	intron (NM_000416, intron 1 of 6)	5411	NM_001363526	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
131026	chr2	88054751	88056530	+	0	NA	5' UTR (NM_016618, exon 1 of 4)	5' UTR (NM_016618, exon 1 of 4)	143	NM_016618	51315		NM_016618	ENSG00000172086	KRCC1	CHBP2	lysine rich coiled-coil 1	protein-coding
188750	chr5	157563421	157564080	+	0	NA	intron (NM_033274, intron 3 of 22)	intron (NM_033274, intron 3 of 22)	12025	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
50358	chr12	47202221	47202650	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	14008	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
196105	chr6	42368121	42368630	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	83676	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
115151	chr19	14402171	14402830	+	0	NA	intron (NM_001025160, intron 10 of 18)	intron (NM_001025160, intron 10 of 18)	16841	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
125104	chr2	9750671	9751200	+	0	NA	Intergenic	Intergenic	-92507	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
23830	chr1	234597771	234598550	+	0	NA	Intergenic	Intergenic	11365	NM_001077397	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
22350	chr1	214607671	214608200	+	0	NA	intron (NM_016343, intron 1 of 19)	intron (NM_016343, intron 1 of 19)	4740	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
5221	chr1	24987301	24987500	+	0	NA	Intergenic	L3|LINE|CR1	-22390	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
11013	chr1	84724201	84724830	+	0	NA	Intergenic	Intergenic	-34047	NM_001166295	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
79470	chr16	737921	738380	+	0	NA	intron (NM_022493, intron 2 of 10)	intron (NM_022493, intron 2 of 10)	2847	NM_022493	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
136854	chr2	186490601	186490800	+	0	NA	intron (NM_018471, intron 1 of 9)	intron (NM_018471, intron 1 of 9)	4440	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
233094	chr9	137111201	137111550	+	0	NA	intron (NM_013379, intron 11 of 12)	intron (NM_013379, intron 11 of 12)	3358	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
59281	chr13	24233451	24233750	+	0	NA	intron (NM_001166271, intron 2 of 12)	intron (NM_001166271, intron 2 of 12)	20839	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
31155	chr10	90862851	90863150	+	0	NA	Intergenic	Intergenic	-4961	NM_019860	3363		NM_000872	ENSG00000148680	HTR7	5-HT7	5-hydroxytryptamine receptor 7	protein-coding
73765	chr15	45522021	45523280	+	0	NA	5' UTR (NM_013309, exon 1 of 8)	5' UTR (NM_013309, exon 1 of 8)	105	NM_001321036	7782		NM_013309	ENSG00000104154	SLC30A4	ZNT4|znT-4	solute carrier family 30 member 4	protein-coding
8754	chr1	42708701	42709480	+	0	NA	Intergenic	L1MA4A|LINE|L1	25954	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
169835	chr3	177165621	177166080	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluJb|SINE|Alu	30628	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
217579	chr8	29498771	29500500	+	0	NA	Intergenic	AluJo|SINE|Alu	-148951	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
48743	chr12	10720201	10720580	+	0	NA	intron (NM_003651, intron 1 of 9)	intron (NM_003651, intron 1 of 9)	2933	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
74874	chr15	63573571	63573730	+	0	NA	intron (NR_046342, intron 10 of 15)	Kanga2_a|DNA|TcMar-Tc2	-23737	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
134645	chr2	144438721	144439580	+	0	NA	intron (NM_014795, intron 2 of 9)	(A)n|Simple_repeat|Simple_repeat	-80464	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
72058	chr15	28847301	28847780	+	0	NA	intron (NM_001365371, intron 1 of 8)	intron (NM_001365371, intron 1 of 8)	1145	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
165752	chr3	105745621	105745880	+	0	NA	intron (NM_001321811, intron 5 of 16)	intron (NM_001321811, intron 5 of 16)	121841	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
133297	chr2	113601751	113602400	+	0	NA	promoter-TSS (NR_024005)	promoter-TSS (NR_024005)	-499	NR_024005	84771		NM_032685		DDX11L2	-	DEAD/H-box helicase 11 like 2 (pseudogene)	pseudo
2465	chr1	9651301	9653200	+	0	NA	TTS (NR_027045)	TTS (NR_027045)	519	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
203299	chr6	169992371	169992730	+	0	NA	Intergenic	Intergenic	29927	NR_027434	100131532		NR_027434		LOC100131532	-	uncharacterized LOC100131532	ncRNA
149176	chr21	18155451	18155800	+	0	NA	intron (NM_001204176, intron 2 of 6)	intron (NM_001204176, intron 2 of 6)	-89208	NM_024944	140578		NM_024944	ENSG00000154645	CHODL	C21orf68|MT75|PRED12	chondrolectin	protein-coding
81247	chr16	4607171	4607900	+	0	NA	Intergenic	Intergenic	7353	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
199948	chr6	127915321	127915880	+	0	NA	intron (NM_001164687, intron 1 of 5).2	(AG)n|Simple_repeat|Simple_repeat	3031	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
19984	chr1	185040871	185041300	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4473	NM_007212	6045		NM_007212	ENSG00000121481	RNF2	BAP-1|BAP1|DING|HIPI3|LUSYAM|RING1B|RING2	ring finger protein 2	protein-coding
173077	chr4	6196871	6197030	+	0	NA	intron (NM_144720, intron 1 of 12)	intron (NM_144720, intron 1 of 12)	-2331	NM_001306134	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
67772	chr14	73738521	73739200	+	0	NA	exon (NM_194278, exon 2 of 12)	exon (NM_194278, exon 2 of 12)	-19887	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
35704	chr11	1927801	1929050	+	0	NA	intron (NM_001363561, intron 8 of 16)	intron (NM_001363561, intron 8 of 16)	5594	NM_001367843	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
123453	chr19	54147301	54147700	+	0	NA	intron (NM_014516, intron 10 of 17).8	intron (NM_014516, intron 10 of 17).8	9738	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
176019	chr4	82342951	82343450	+	0	NA	Intergenic	Intergenic	30791	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
191973	chr6	16151871	16152030	+	0	NA	Intergenic	Intergenic	10394	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
198272	chr6	99603471	99604150	+	0	NA	Intergenic	CpG	-3023	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
141362	chr2	240639771	240639930	+	0	NA	Intergenic	Intergenic	14605	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
111847	chr19	4580251	4580700	+	0	NA	Intergenic	CpG	-20791	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
2732	chr1	10664421	10664680	+	0	NA	intron (NM_017766, intron 5 of 15)	intron (NM_017766, intron 5 of 15)	132096	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
18169	chr1	160799171	160799330	+	0	NA	intron (NM_001033667, intron 1 of 2)	L1ME2z|LINE|L1	3076	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
152933	chr22	22809751	22810600	+	0	NA	Intergenic	Intergenic	-12601	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
106555	chr18	21632371	21632800	+	0	NA	3' UTR (NM_006938, exon 4 of 4)	3' UTR (NM_006938, exon 4 of 4)	20271	NM_006938	6632		NM_006938	ENSG00000167088	SNRPD1	HsT2456|SMD1|SNRPD|Sm-D1	small nuclear ribonucleoprotein D1 polypeptide	protein-coding
143815	chr20	32476851	32477280	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	6425	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
42025	chr11	67426671	67427180	+	0	NA	Intergenic	AluJr|SINE|Alu	-1569	NM_003952	6199		NM_003952	ENSG00000175634	RPS6KB2	KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb	ribosomal protein S6 kinase B2	protein-coding
108346	chr18	67266721	67267000	+	0	NA	Intergenic	Intergenic	185276	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
176313	chr4	87424651	87424750	+	0	NA	intron (NM_024047, intron 1 of 7)	HAL1ME|LINE|L1	2103	NM_198038	53343		NM_024047	ENSG00000170502	NUDT9	NUDT10	nudix hydrolase 9	protein-coding
164486	chr3	60010201	60011650	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	69984	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
212746	chr7	129917371	129917530	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	35510	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
77249	chr15	81305801	81306780	+	0	NA	intron (NM_001352686, intron 17 of 18)	intron (NM_001352686, intron 17 of 18)	9320	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
183607	chr5	80209521	80210300	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluJb|SINE|Alu	46138	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
147256	chr20	57428951	57429480	+	0	NA	Intergenic	Intergenic	-36159	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
97146	chr17	42563671	42564350	+	0	NA	exon (NM_001042529, exon 3 of 10)	exon (NM_001042529, exon 3 of 10)	1862	NM_001042529	80347		NM_025233	ENSG00000068120	COASY	DPCK|NBIA6|NBP|PCH12|PPAT|UKR1|pOV-2	Coenzyme A synthase	protein-coding
163773	chr3	52380871	52381030	+	0	NA	intron (NM_015512, intron 48 of 77)	LTR42|LTR|ERVL	29058	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
221411	chr8	123536251	123536850	+	0	NA	intron (NM_001242463, intron 1 of 6)	intron (NM_001242463, intron 1 of 6)	-4407	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
104141	chr17	80381751	80381850	+	0	NA	intron (NM_001256071, intron 57 of 67)	intron (NM_001256071, intron 57 of 67)	-33367	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
135882	chr2	171087691	171088180	+	0	NA	intron (NM_012290, intron 2 of 20)	HAL1|LINE|L1	-20962	NM_001136555	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
1636	chr1	3775701	3776780	+	0	NA	TTS (NM_001163724)	TTS (NM_001163724)	3491	NM_001163724	388588		NM_001163724	ENSG00000235169	SMIM1	Vel	small integral membrane protein 1 (Vel blood group)	protein-coding
113439	chr19	9816771	9817130	+	0	NA	intron (NM_001316942, intron 2 of 3)	THE1A|LTR|ERVL-MaLR	2129	NM_001316938	54850		NM_017703	ENSG00000127452	FBXL12	Fbl12	F-box and leucine rich repeat protein 12	protein-coding
170926	chr3	194274801	194276230	+	0	NA	Intergenic	Intergenic	-25362	NR_125403	100505920		NR_125403		LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
125565	chr2	16140951	16141450	+	0	NA	Intergenic	LTR33A|LTR|ERVL	90773	NR_126559	104797537		NR_126559	ENSG00000236289	GACAT3	LINC01458|lncRNA-AC130710	gastric cancer associated transcript 3	ncRNA
9662	chr1	52682001	52682200	+	0	NA	Intergenic	AluJo|SINE|Alu	16247	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
133122	chr2	112656501	112656900	+	0	NA	intron (NM_005415, intron 5 of 10)	intron (NM_005415, intron 5 of 10)	10761	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
196564	chr6	44122701	44124350	+	0	NA	intron (NM_001318767, intron 1 of 2)	intron (NM_001318767, intron 1 of 2)	2742	NM_001318770	64928		NM_032111	ENSG00000180992	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32|uL14m	mitochondrial ribosomal protein L14	protein-coding
13120	chr1	111636371	111637000	+	0	NA	intron (NM_001010935, intron 2 of 8)	AluSp|SINE|Alu	-16287	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
80815	chr16	3459121	3460150	+	0	NA	intron (NM_001317095, intron 1 of 5)	intron (NM_001317095, intron 1 of 5)	1590	NM_001317097	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
111525	chr19	4013751	4014150	+	0	NA	intron (NM_015897, intron 2 of 10)	MLT1F|LTR|ERVL-MaLR	6214	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
68640	chr14	89912751	89913050	+	0	NA	intron (NM_145231, intron 5 of 5)	intron (NM_145231, intron 5 of 5)	41636	NM_001284268	90141		NM_145231	ENSG00000140025	EFCAB11	C14orf143	EF-hand calcium binding domain 11	protein-coding
183957	chr5	88502121	88503100	+	0	NA	Intergenic	Intergenic	-63520	NR_105021	102546226		NR_105021	ENSG00000250156	LINC02060	-	long intergenic non-protein coding RNA 2060	ncRNA
195311	chr6	36593421	36595000	+	0	NA	promoter-TSS (NR_036610)	promoter-TSS (NR_036610)	-103	NR_036610	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
228481	chr9	99911871	99912350	+	0	NA	intron (NM_017919, intron 1 of 7)	AluSq2|SINE|Alu	5456	NM_017919	55014		NM_017919	ENSG00000136874	STX17	-	syntaxin 17	protein-coding
166784	chr3	122502071	122502430	+	0	NA	intron (NM_002264, intron 1 of 13)	intron (NM_002264, intron 1 of 13)	12689	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
202482	chr6	158256101	158256850	+	0	NA	Intergenic	Intergenic	-55990	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
4851	chr1	23695021	23695650	+	0	NA	intron (NM_000975, intron 4 of 5)	intron (NM_000975, intron 4 of 5)	3529	NM_000975	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
49349	chr12	22163821	22164580	+	0	NA	Intergenic	Intergenic	117982	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
169769	chr3	172615951	172616330	+	0	NA	Intergenic	Ricksha_0|DNA|MULE-MuDR	-20533	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
87713	chr16	74999801	75000700	+	0	NA	intron (NM_032268, intron 1 of 4)	CpG	1226	NM_032268	84937		NM_032268	ENSG00000186187	ZNRF1	NIN283	zinc and ring finger 1	protein-coding
172508	chr4	2259371	2260080	+	0	NA	intron (NM_006454, intron 2 of 5)	intron (NM_006454, intron 2 of 5)	2384	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
89850	chr16	89598201	89598820	+	0	NA	Intergenic	Intergenic	-14798	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
75402	chr15	65762151	65762630	+	0	NA	intron (NM_001376919, intron 1 of 31)	AluJo|SINE|Alu	29903	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
163674	chr3	52231121	52232250	+	0	NA	intron (NM_007284, intron 3 of 8)	intron (NM_007284, intron 3 of 8)	-5522	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
201246	chr6	144053421	144053930	+	0	NA	5' UTR (NM_001317159, exon 2 of 8)	5' UTR (NM_001317159, exon 2 of 8)	1587	NM_001317159	5325		NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
218823	chr8	59115071	59115230	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	3997	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
84232	chr16	29990821	29991250	+	0	NA	intron (NM_004783, intron 18 of 18)	intron (NM_004783, intron 18 of 18)	4582	NM_003609	8479		NM_003609	ENSG00000149929	HIRIP3	-	HIRA interacting protein 3	protein-coding
238871	chrX	154532551	154532850	+	0	NA	exon (NM_001360016, exon 10 of 13)	exon (NM_001360016, exon 10 of 13)	-8538	NM_001377312	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
27142	chr10	28301921	28303880	+	0	NA	non-coding (NR_134517, exon 1 of 17)	non-coding (NR_134517, exon 1 of 17)	164	NR_134518	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
99688	chr17	50777671	50778230	+	0	NA	Intergenic	Intergenic	9300	NR_107026	102466918		NR_107026	ENSG00000278672	MIR8059	hsa-mir-8059	microRNA 8059	ncRNA
50196	chr12	46184121	46184650	+	0	NA	3' UTR (NM_001077484, exon 17 of 17)	3' UTR (NM_001077484, exon 17 of 17)	82131	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
179367	chr4	183427501	183427700	+	0	NA	Intergenic	AluY|SINE|Alu	-17036	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
26005	chr10	12131551	12132200	+	0	NA	intron (NM_001142627, intron 1 of 11)	AluSx1|SINE|Alu	-1059	NR_039699	100616488		NR_039699	ENSG00000265653	MIR548AK	-	microRNA 548ak	ncRNA
199589	chr6	119116921	119117180	+	0	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	32143	NM_001288576	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
148551	chr20	64232601	64233500	+	0	NA	intron (NM_004535, intron 19 of 22)	intron (NM_004535, intron 19 of 22)	-22645	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
204991	chr7	6435151	6436950	+	0	NA	intron (NM_139179, intron 3 of 14)	intron (NM_139179, intron 3 of 14)	11904	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
84454	chr16	30427471	30428330	+	0	NA	intron (NR_134470, intron 2 of 2)	AluJr|SINE|Alu	1900	NR_134471	79077		NM_024096	ENSG00000179958	DCTPP1	CDA03|RS21C6|XTP3TPA	dCTP pyrophosphatase 1	protein-coding
158550	chr3	4352451	4352550	+	0	NA	Intergenic	Intergenic	49196	NM_006515	6419		NM_006515	ENSG00000170364	SETMAR	METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
156876	chr22	42119571	42119730	+	0	NA	intron (NR_034118, intron 3 of 4)	AluY|SINE|Alu	11158	NM_001348386	1564		NM_001002910		CYP2D7	CYP2D|CYP2D6|CYP2D7AP|CYP2D7P|CYP2D7P1|CYP2D@|P450C2D|P450DB1|RNA40057	cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)	protein-coding
166683	chr3	120348271	120349730	+	0	NA	exon (NM_001099678, exon 1 of 4)	exon (NM_001099678, exon 1 of 4)	354	NM_001099678	116064		NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
190293	chr5	179592021	179592280	+	0	NA	intron (NM_001040452, intron 10 of 17).2	AluSc|SINE|Alu	11591	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
222464	chr8	139706771	139706930	+	0	NA	Intergenic	Intergenic	-3727	NM_001282534	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
94285	chr17	28718551	28718650	+	0	NA	promoter-TSS (NM_001256276)	promoter-TSS (NM_001256276)	-332	NM_001144943	83871		NM_031934	ENSG00000109113	RAB34	NARR|OFD20|RAB39|RAH	RAB34, member RAS oncogene family	protein-coding
221597	chr8	125507871	125508950	+	0	NA	Intergenic	Intergenic	76201	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
85996	chr16	57462301	57463680	+	0	NA	intron (NM_032940, intron 1 of 8)	CpG	311	NM_032940	5432		NM_002694	ENSG00000102978	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	RNA polymerase II subunit C	protein-coding
125472	chr2	12334671	12335030	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	135720	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
88802	chr16	87394401	87395250	+	0	NA	intron (NM_022818, intron 1 of 3)	FLAM_C|SINE|Alu	2489	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
30652	chr10	80470471	80471380	+	0	NA	intron (NM_001351272, intron 2 of 9)	intron (NM_001351272, intron 2 of 9)	2684	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
63930	chr14	22003671	22003830	+	0	NA	Intergenic	Intergenic	-332733	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
55644	chr12	107134601	107134850	+	0	NA	Intergenic	Intergenic	-41176	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
120538	chr19	44907401	44907950	+	0	NA	intron (NM_000041, intron 2 of 3)	intron (NM_000041, intron 2 of 3)	1274	NM_001302690	348		NM_000041	ENSG00000130203	APOE	AD2|APO-E|ApoE4|LDLCQ5|LPG	apolipoprotein E	protein-coding
199660	chr6	122443571	122443730	+	0	NA	3' UTR (NM_020755, exon 10 of 10)	3' UTR (NM_020755, exon 10 of 10)	28157	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
213108	chr7	131226001	131226200	+	0	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	101679	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
217411	chr8	28371351	28371850	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	14860	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
136217	chr2	174583701	174584030	+	0	NA	intron (NM_001375837, intron 2 of 4)	AluJb|SINE|Alu	13939	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
206219	chr7	28626721	28626980	+	0	NA	intron (NM_182899, intron 4 of 9)	intron (NM_182899, intron 4 of 9)	-59283	NM_001011666	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
71203	chr14	105072371	105073780	+	0	NA	Intergenic	Intergenic	-7645	NM_013345	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
37490	chr11	18399621	18400680	+	0	NA	intron (NM_001135239, intron 3 of 6)	intron (NM_001135239, intron 3 of 6)	3884	NM_001165414	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
128040	chr2	47402671	47404300	+	0	NA	intron (NM_000251, intron 1 of 15)	CpG	329	NM_000251	4436		NM_000251	ENSG00000095002	MSH2	COCA1|FCC1|HNPCC|HNPCC1|LCFS2|LYNCH1|MMRCS2|MSH-2|hMSH2	mutS homolog 2	protein-coding
133279	chr2	113511301	113511700	+	0	NA	Intergenic	SATR1|Satellite|Satellite	12416	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
212542	chr7	128856221	128857080	+	0	NA	exon (NM_001127487, exon 43 of 47)	exon (NM_001127487, exon 43 of 47)	5976	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
203277	chr6	169750101	169750300	+	0	NA	non-coding (NR_138070, exon 1 of 1).2	non-coding (NR_138070, exon 1 of 1).2	1372	NM_174910	6991		NM_174910	ENSG00000184786	DYNLT2	TCTE3|TCTEX1D3|TCTEX2|Tctex4|oda12	dynein light chain Tctex-type 2	protein-coding
61007	chr13	48066671	48066850	+	0	NA	Intergenic	MER61C|LTR|ERV1	-10377	NR_046511	100873965		NR_046511	ENSG00000229111	MED4-AS1	MED4-AS	MED4 antisense RNA 1	ncRNA
72235	chr15	30420671	30421030	+	0	NA	Intergenic	Intergenic	-6590	NM_001282484	101059918		NM_001282484	ENSG00000186399	GOLGA8R	-	golgin A8 family member R	protein-coding
194462	chr6	33184221	33184480	+	0	NA	intron (NM_080680, intron 7 of 65).6	intron (NM_080680, intron 7 of 65).6	8117	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
98121	chr17	45832151	45833200	+	0	NA	intron (NM_001303018, intron 6 of 10).3	X7A_LINE|LINE|CR1	-12206	NM_175882	162540		NM_175882	ENSG00000185294	SPPL2C	IMP5	signal peptide peptidase like 2C	protein-coding
24990	chr10	3123951	3124450	+	0	NA	intron (NM_001345944, intron 16 of 21)	MER46C|DNA|TcMar-Tigger	-9904	NR_132758	106633806		NR_132758		SNORD142	SNORA85|SNORD174|ZL68	small nucleolar RNA, C/D box 142	snoRNA
173099	chr4	6328901	6329100	+	0	NA	intron (NM_001206995, intron 9 of 9)	intron (NM_001206995, intron 9 of 9)	52868	NM_181876	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
198994	chr6	110916771	110916930	+	0	NA	Intergenic	MER9a3|LTR|ERVK	-41856	NM_138408	112495		NM_138408	ENSG00000155115	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC subunit 6	protein-coding
85581	chr16	53491951	53492450	+	0	NA	TTS (NM_001323611)	TTS (NM_001323611)	11009	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
101406	chr17	67383221	67383630	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	6144	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
81589	chr16	10322551	10322650	+	0	NA	Intergenic	AluSz|SINE|Alu	-63461	NM_024997	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
37465	chr11	18320521	18320950	+	0	NA	intron (NM_181507, intron 1 of 22)	L3|LINE|CR1	1405	NM_007216	11234		NM_007216	ENSG00000110756	HPS5	AIBP63|BLOC2S2	HPS5 biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding
229212	chr9	114889621	114890100	+	0	NA	Intergenic	L1M1|LINE|L1	40731	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
146895	chr20	51531021	51531780	+	0	NA	intron (NM_001258292, intron 1 of 9)	intron (NM_001258292, intron 1 of 9)	11319	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
199355	chr6	116090301	116090500	+	0	NA	Intergenic	Intergenic	-10453	NM_152729	221294		NM_152729	ENSG00000178425	NT5DC1	C6orf200|LP2642|NT5C2L1	5'-nucleotidase domain containing 1	protein-coding
98828	chr17	48414701	48414900	+	0	NA	intron (NM_001075099, intron 1 of 12)	intron (NM_001075099, intron 1 of 12)	15414	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
173142	chr4	6658301	6659300	+	0	NA	Intergenic	CpG	15081	NR_134665	105374366		NR_134664	ENSG00000251580	LINC02482	-	long intergenic non-protein coding RNA 2482	ncRNA
214322	chr7	149280751	149280850	+	0	NA	intron (NR_144367, intron 6 of 6)	intron (NR_144367, intron 6 of 6)	-4481	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
130946	chr2	87508901	87509130	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	39065	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
1030	chr1	1873221	1873850	+	0	NA	intron (NM_001282538, intron 1 of 9)	MLT1H|LTR|ERVL-MaLR	17552	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
24965	chr10	2522671	2523030	+	0	NA	Intergenic	CpG	-21388	NR_136146	105376351		NR_136146		LINC02645	-	long intergenic non-protein coding RNA 2645	ncRNA
127525	chr2	42313671	42313830	+	0	NA	intron (NM_019063, intron 17 of 22)	AluSx|SINE|Alu	46288	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
229983	chr9	126810001	126810400	+	0	NA	intron (NM_014007, intron 2 of 2)	AluSq|SINE|Alu	5160	NM_014007	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
23144	chr1	226716851	226718150	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	21675	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
2903	chr1	11675171	11675830	+	0	NA	intron (NM_006341, intron 7 of 8)	intron (NM_006341, intron 7 of 8)	5648	NM_006341	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
219781	chr8	81135321	81135780	+	0	NA	Intergenic	L2a|LINE|L2	-23482	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
194575	chr6	33417301	33419400	+	0	NA	promoter-TSS (NM_001014837)	promoter-TSS (NM_001014837)	-243	NM_001014433	51596		NM_015921	ENSG00000112514	CUTA	ACHAP|C6orf82	cutA divalent cation tolerance homolog	protein-coding
130690	chr2	86545321	86545580	+	0	NA	intron (NM_001198954, intron 3 of 7)	SVA_A|Retroposon|SVA	17993	NM_001193517	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
154187	chr22	31341071	31341300	+	0	NA	3' UTR (NM_032051, exon 3 of 3)	3' UTR (NM_032051, exon 3 of 3)	5161	NM_032052	23598		NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ/BTB and AT hook containing zinc finger 1	protein-coding
106083	chr18	9132471	9132830	+	0	NA	intron (NR_110771, intron 2 of 3)	AluJb|SINE|Alu	4070	NR_110771	101927275		NR_110771	ENSG00000266053	NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
52098	chr12	54129471	54129630	+	0	NA	intron (NR_026656, intron 1 of 1)	intron (NR_026656, intron 1 of 1)	3479	NR_026656	400043		NR_026656	ENSG00000250742	LINC02381	HMS|lncEPAT	long intergenic non-protein coding RNA 2381	ncRNA
230196	chr9	127807321	127807600	+	0	NA	exon (NM_001288803, exon 6 of 14)	exon (NM_001288803, exon 6 of 14)	4279	NM_001018078	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
200808	chr6	137906301	137906650	+	0	NA	Intergenic	L1ME3E|LINE|L1	-38242	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
139263	chr2	219445951	219446450	+	0	NA	intron (NM_005876, intron 3 of 40)	intron (NM_005876, intron 3 of 40)	11357	NM_005876	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
20090	chr1	186409101	186409300	+	0	NA	intron (NM_001164245, intron 11 of 12)	AluJb|SINE|Alu	-25961	NR_126002	102724919		NR_126002	ENSG00000229739	PDC-AS1	-	PDC antisense RNA 1	ncRNA
45284	chr11	118046101	118047650	+	0	NA	intron (NM_001354434, intron 2 of 5)	intron (NM_001354434, intron 2 of 5)	-30137	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
217597	chr8	29647301	29647600	+	0	NA	Intergenic	Intergenic	100659	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
134308	chr2	135984901	135986150	+	0	NA	intron (NR_110199, intron 1 of 3)	intron (NR_110199, intron 1 of 3)	101	NM_001349	1615		NM_001349	ENSG00000115866	DARS1	DARS|HBSL|aspRS	aspartyl-tRNA synthetase 1	protein-coding
236014	chrX	54891651	54891800	+	0	NA	Intergenic	L1PREC2|LINE|L1	-28838	NM_001271183	7216		NM_016157	ENSG00000067445	TRO	MAGE-d3|MAGED3	trophinin	protein-coding
103074	chr17	77315771	77316430	+	0	NA	intron (NM_001113491, intron 2 of 11)	MER103C|DNA|hAT-Charlie	-3415	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
53750	chr12	68654871	68655480	+	0	NA	intron (NM_001251921, intron 4 of 6)	AluJb|SINE|Alu	-27800	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
205631	chr7	22559821	22560380	+	0	NA	Intergenic	Intergenic	-3237	NR_038393	100506178		NR_038393	ENSG00000232759	STEAP1B-AS1	-	STEAP1B antisense RNA 1	ncRNA
95230	chr17	35274201	35275350	+	0	NA	Intergenic	L1PA4|LINE|L1	31703	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
18877	chr1	168135271	168135430	+	0	NA	intron (NM_001349634, intron 1 of 7)	MIRc|SINE|MIR	1357	NM_001267613	23432		NM_007369	ENSG00000143147	GPR161	RE2	G protein-coupled receptor 161	protein-coding
70398	chr14	101966901	101967100	+	0	NA	intron (NM_001376, intron 1 of 77)	intron (NM_001376, intron 1 of 77)	2427	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
192820	chr6	27019851	27020300	+	0	NA	non-coding (NR_026776, exon 1 of 1)	non-coding (NR_026776, exon 1 of 1)	231	NR_026776	100270746		NR_026776		LARRPM	-	LINC00240 antisense RNA regulating promoter methylation	ncRNA
20065	chr1	185680321	185680680	+	0	NA	Intergenic	L2b|LINE|L2	-52012	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
230168	chr9	127775471	127775630	+	0	NA	intron (NM_170600, intron 1 of 11)	AluSq2|SINE|Alu	3116	NM_170600	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
17471	chr1	156713001	156713200	+	0	NA	Intergenic	Intergenic	-7284	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
49641	chr12	28249651	28250130	+	0	NA	intron (NM_001352086, intron 3 of 15)	intron (NM_001352086, intron 3 of 15)	-59152	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
180200	chr5	1498821	1499280	+	0	NA	intron (NM_024830, intron 2 of 13)	intron (NM_024830, intron 2 of 13)	11806	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
7128	chr1	32194901	32195300	+	0	NA	exon (NM_001376857, exon 10 of 10)	exon (NM_001376857, exon 10 of 10)	-5495	NM_001301011	79140		NM_024296	ENSG00000160050	CCDC28B	-	coiled-coil domain containing 28B	protein-coding
186872	chr5	139511221	139512330	+	0	NA	Intergenic	LTR12|LTR|ERV1	-29017	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
171046	chr3	195252671	195252980	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	-4905	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
119115	chr19	39341101	39343650	+	0	NA	promoter-TSS (NM_001384584)	promoter-TSS (NM_001384584)	-46	NM_001384587	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
15857	chr1	151420071	151420230	+	0	NA	intron (NM_015100, intron 10 of 18)	AluJr|SINE|Alu	20577	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
159195	chr3	12872871	12873030	+	0	NA	Intergenic	Intergenic	12261	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
8305	chr1	40057321	40058000	+	0	NA	intron (NM_001350484, intron 2 of 13)	intron (NM_001350484, intron 2 of 13)	16634	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
236387	chrX	71103251	71104530	+	0	NA	TTS (NM_001025265)	TTS (NM_001025265)	2850	NR_033212	158830		NM_001025265	ENSG00000204165	CXorf65	-	chromosome X open reading frame 65	protein-coding
122892	chr19	50519521	50519780	+	0	NA	intron (NM_001348568, intron 2 of 2)	AluSz|SINE|Alu	-4966	NM_001024656	554235		NM_001024656	ENSG00000204653	ASPDH	-	aspartate dehydrogenase domain containing	protein-coding
108891	chr18	79416821	79417330	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	16776	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
106389	chr18	13379301	13379500	+	0	NA	intron (NM_001378098, intron 1 of 5)	intron (NM_001378098, intron 1 of 5)	40797	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
160918	chr3	36729471	36729700	+	0	NA	intron (NM_033403, intron 2 of 4)	intron (NM_033403, intron 2 of 4)	10276	NM_033403	85443		NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin like kinase 3	protein-coding
16081	chr1	153531851	153532600	+	0	NA	Intergenic	Intergenic	3766	NM_014624	6277		NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA|S10A6	S100 calcium binding protein A6	protein-coding
140364	chr2	232772371	232772980	+	0	NA	intron (NM_002242, intron 1 of 2)	intron (NM_002242, intron 1 of 2)	3890	NM_001172417	3769		NM_002242	ENSG00000115474	KCNJ13	KIR1.4|KIR7.1|LCA16|SVD	potassium inwardly rectifying channel subfamily J member 13	protein-coding
113876	chr19	10667001	10667230	+	0	NA	intron (NM_153464, intron 1 of 17)	AluJb|SINE|Alu	12769	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
174625	chr4	40306301	40306580	+	0	NA	promoter-TSS (NR_121641)	promoter-TSS (NR_121641)	-745	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
70156	chr14	100297171	100297600	+	0	NA	intron (NM_001352823, intron 2 of 5)	intron (NM_001352823, intron 2 of 5)	9059	NM_001291814	123096		NM_152333	ENSG00000197119	SLC25A29	C14orf69|CACL|ORNT3	solute carrier family 25 member 29	protein-coding
33068	chr10	110882851	110883250	+	0	NA	exon (NM_001199492, exon 4 of 12)	exon (NM_001199492, exon 4 of 12)	11122	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
134971	chr2	152174871	152176580	+	0	NA	promoter-TSS (NM_005843)	promoter-TSS (NM_005843)	38	NM_005843	10254		NM_005843	ENSG00000115145	STAM2	Hbp|STAM2A|STAM2B	signal transducing adaptor molecule 2	protein-coding
3824	chr1	16874221	16874580	+	0	NA	TTS (NR_160658)	TTS (NR_160658)	2174	NR_160657	112267871		NR_160657	ENSG00000228549	LINC03126	-	long intergenic non-protein coding RNA 3126	ncRNA
129382	chr2	68801221	68801680	+	0	NA	intron (NM_001364819, intron 4 of 10)	L2-3_Crp|LINE|L2	26540	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
197771	chr6	87575121	87575650	+	0	NA	intron (NR_146756, intron 1 of 19)	LTR16E1|LTR|ERVL	14602	NM_020320	57038		NM_014107	ENSG00000146282	RARS2	ArgRS|DALRD2|PCH6|PRO1992|RARSL	arginyl-tRNA synthetase 2, mitochondrial	protein-coding
32755	chr10	104322501	104323300	+	0	NA	promoter-TSS (NR_120622)	promoter-TSS (NR_120622)	-464	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
114923	chr19	13960821	13961480	+	0	NA	TTS (NM_002918)	TTS (NM_002918)	-7758	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
90259	chr17	948801	949080	+	0	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	30836	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
103938	chr17	79841601	79842130	+	0	NA	Intergenic	CpG	-2425	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
51344	chr12	51393651	51393750	+	0	NA	intron (NM_001258401, intron 1 of 24)	intron (NM_001258401, intron 1 of 24)	-2294	NM_007210	11226		NM_007210	ENSG00000139629	GALNT6	GALNAC-T6|GalNAcT6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding
136030	chr2	172461771	172462600	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	3837	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
221579	chr8	125262371	125263080	+	0	NA	intron (NR_146191, intron 6 of 8)	MIRc|SINE|MIR	-167633	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
39932	chr11	62535621	62536380	+	0	NA	exon (NM_001346446, exon 3 of 5)	exon (NM_001346446, exon 3 of 5)	9664	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
165556	chr3	101466671	101467780	+	0	NA	intron (NM_001077203, intron 3 of 22)	L1PA6|LINE|L1	45987	NM_001282802	57337		NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
10383	chr1	64969171	64969530	+	0	NA	intron (NM_001321853, intron 2 of 26)	MER20|DNA|hAT-Charlie	-2414	NM_001320923	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
173393	chr4	7971671	7971830	+	0	NA	intron (NM_001286688, intron 14 of 14)	intron (NM_001286688, intron 14 of 14)	-31824	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
67576	chr14	71557371	71557630	+	0	NA	intron (NM_001354289, intron 5 of 23)	intron (NM_001354289, intron 5 of 23)	-28798	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
124721	chr2	3690251	3690430	+	0	NA	intron (NM_018436, intron 7 of 11)	(CCCCT)n|Simple_repeat|Simple_repeat	-13235	NM_001287444	728597		NM_001287444	ENSG00000214866	DCDC2C	-	doublecortin domain containing 2C	protein-coding
112088	chr19	5404071	5404300	+	0	NA	Intergenic	Intergenic	-51232	NM_181710	148066		NM_181710	ENSG00000105428	ZNRF4	RNF204|SPERIZIN|Ssrzf1|spzn	zinc and ring finger 4	protein-coding
63774	chr14	21258371	21259580	+	0	NA	intron (NM_001077443, intron 1 of 7)	L2a|LINE|L2	10467	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
198129	chr6	90415071	90415430	+	0	NA	Intergenic	Intergenic	102508	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
62580	chr13	99984801	99985530	+	0	NA	intron (NM_007129, intron 2 of 2)	CpG-6798	3381	NM_007129	7546		NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
180081	chr5	1108871	1109850	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	2703	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
69494	chr14	95518001	95518200	+	0	NA	Intergenic	Intergenic	-1450	NM_001384284	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
64865	chr14	35296571	35296730	+	0	NA	intron (NM_001282232, intron 1 of 6)	intron (NM_001282232, intron 1 of 6)	4268	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
63615	chr14	20624821	20625750	+	0	NA	Intergenic	Intergenic	16406	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
235135	chrX	41087321	41087580	+	0	NA	intron (NM_001039590, intron 1 of 44)	intron (NM_001039590, intron 1 of 44)	2005	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
83223	chr16	23826171	23827830	+	0	NA	Intergenic	L1ME3|LINE|L1	-8983	NM_212535	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
156439	chr22	41237201	41238700	+	0	NA	exon (NM_138481, exon 3 of 6)	exon (NM_138481, exon 3 of 6)	2981	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
47886	chr12	6703071	6703230	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2335	NM_153685	196500		NM_153685	ENSG00000139200	PIANP	C12orf53|LEDA1|PANP|leda-1	PILR alpha associated neural protein	protein-coding
109364	chr19	635301	635980	+	0	NA	Intergenic	Intergenic	-2103	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
77587	chr15	85197571	85197730	+	0	NA	Intergenic	Intergenic	37131	NR_158179	101929479		NR_158179		LOC101929479	-	golgin A2 pseudogene	pseudo
205709	chr7	23373171	23373750	+	0	NA	intron (NM_006547, intron 3 of 14)	L1M3|LINE|L1	-22986	NR_145734	109616981		NR_145734	ENSG00000212264	SNORD65C	-	small nucleolar RNA, C/D box 65C	snoRNA
135707	chr2	168974251	168974630	+	0	NA	intron (NM_003742, intron 12 of 27)	intron (NM_003742, intron 12 of 27)	56884	NM_003742	8647		NM_003742	ENSG00000073734	ABCB11	ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP	ATP binding cassette subfamily B member 11	protein-coding
127847	chr2	45586201	45586400	+	0	NA	intron (NM_018079, intron 4 of 20)	L1ME4b|LINE|L1	24967	NM_018079	55133		NM_018079	ENSG00000068784	SRBD1	-	S1 RNA binding domain 1	protein-coding
42870	chr11	73310051	73310150	+	0	NA	promoter-TSS (NR_147696)	promoter-TSS (NR_147696)	-739	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
64890	chr14	35389721	35389980	+	0	NA	Intergenic	AluSx1|SINE|Alu	14899	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
166032	chr3	108552451	108552950	+	0	NA	intron (NM_020890, intron 19 of 20)	intron (NM_020890, intron 19 of 20)	-23378	NM_014981	22989		NM_014981	ENSG00000144821	MYH15	-	myosin heavy chain 15	protein-coding
52328	chr12	54977851	54978230	+	0	NA	promoter-TSS (NR_147064)	promoter-TSS (NR_147064)	-977	NR_147064	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
19943	chr1	184794321	184794580	+	0	NA	3' UTR (NM_052966, exon 14 of 14)	3' UTR (NM_052966, exon 14 of 14)	-39592	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
88961	chr16	87853661	87855030	+	0	NA	TTS (NR_162122)	TTS (NR_162122)	449	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
63254	chr13	113945971	113946130	+	0	NA	Intergenic	CpG	-17059	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
230072	chr9	127445971	127446880	+	0	NA	Intergenic	AluJr4|SINE|Alu	2212	NR_002449	26783		NR_002449	ENSG00000201302	SNORA65	RNU65|U65	small nucleolar RNA, H/ACA box 65	snoRNA
75900	chr15	69976321	69976600	+	0	NA	Intergenic	Intergenic	103008	NR_030714	693214		NR_030714	ENSG00000207965	MIR629	MIRN629|hsa-mir-629|mir-629	microRNA 629	ncRNA
49010	chr12	14222501	14222700	+	0	NA	Intergenic	AluY|SINE|Alu	-143032	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
20320	chr1	197521101	197521430	+	0	NA	intron (NR_125340, intron 17 of 19)	intron (NR_125340, intron 17 of 19)	253013	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
181959	chr5	55064551	55064650	+	0	NA	Intergenic	Intergenic	-38046	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
34140	chr10	128050771	128050930	+	0	NA	intron (NM_001323357, intron 3 of 16)	intron (NM_001323357, intron 3 of 16)	3238	NM_001323357	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
201122	chr6	142881721	142882180	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	63226	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
54913	chr12	96117651	96117750	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-74180	NM_001256643	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
179348	chr4	183097901	183098430	+	0	NA	non-coding (NR_024008, exon 1 of 1)	non-coding (NR_024008, exon 1 of 1)	1034	NR_024008	152641		NM_153008	ENSG00000251359	WWC2-AS2	C4orf38	WWC2 antisense RNA 2	ncRNA
111437	chr19	3804901	3805750	+	0	NA	3' UTR (NM_015174, exon 19 of 19)	3' UTR (NM_015174, exon 19 of 19)	-3526	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
63432	chr13	114101971	114102730	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-24395	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
168774	chr3	151284171	151284530	+	0	NA	intron (NM_053002, intron 14 of 42)	intron (NM_053002, intron 14 of 42)	-5808	NM_014879	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
226471	chr9	71741671	71741830	+	0	NA	intron (NM_001135820, intron 4 of 22)	AluSq2|SINE|Alu	26763	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
120729	chr19	45347921	45348180	+	0	NA	exon (NM_177417, exon 5 of 13)	exon (NM_177417, exon 5 of 13)	7300	NM_177417	147700		NM_145275	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
127341	chr2	39114321	39115130	+	0	NA	intron (NM_001382394, intron 1 of 22)	AluSx|SINE|Alu	6326	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
244	chr1	907851	908580	+	0	NA	Intergenic	Intergenic	11477	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
209133	chr7	75089671	75090380	+	0	NA	Intergenic	L1MB4|LINE|L1	-2531	NM_001368301	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
210498	chr7	100174651	100174750	+	0	NA	exon (NM_152742, exon 4 of 10)	exon (NM_152742, exon 4 of 10)	2681	NM_152742	221914		NM_152742	ENSG00000213420	GPC2	-	glypican 2	protein-coding
71726	chr15	20355471	20355630	+	0	NA	Intergenic	Intergenic	72806	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
44955	chr11	116793701	116793900	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-1380	NM_001166598	116519		NM_052968	ENSG00000110243	APOA5	APOAV|RAP3	apolipoprotein A5	protein-coding
379	chr1	1037251	1038000	+	0	NA	intron (NM_198576, intron 3 of 35)	intron (NM_198576, intron 3 of 35)	3632	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
181609	chr5	43605621	43605880	+	0	NA	intron (NM_182977, intron 1 of 21)	intron (NM_182977, intron 1 of 21)	-2520	NR_073113	100652772		NR_073113		NNT-AS1	-	NNT antisense RNA 1	ncRNA
171373	chr3	196097951	196098400	+	0	NA	Intergenic	L1MC3|LINE|L1	-16085	NM_001313966	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
70028	chr14	100097371	100097730	+	0	NA	exon (NM_001330221, exon 3 of 14)	exon (NM_001330221, exon 3 of 14)	11964	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
184089	chr5	93598421	93598850	+	0	NA	Intergenic	Intergenic	15413	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
5560	chr1	25904771	25905900	+	0	NA	intron (NM_203399, intron 1 of 4)	intron (NM_203399, intron 1 of 4)	818	NM_203401	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
200977	chr6	139363801	139364590	+	0	NA	Intergenic	L1PA6|LINE|L1	10018	NM_001168389	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
56311	chr12	112447121	112447780	+	0	NA	intron (NM_001374625, intron 2 of 15)	L1ME3Cz|LINE|L1	28503	NM_001330437	5781		NM_002834	ENSG00000179295	PTPN11	BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2	protein tyrosine phosphatase non-receptor type 11	protein-coding
98730	chr17	48021721	48022400	+	0	NA	Intergenic	Intergenic	-10822	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
215184	chr7	155724551	155724900	+	0	NA	intron (NM_053043, intron 9 of 17)	L1ME1|LINE|L1	80064	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
44437	chr11	104736451	104736750	+	0	NA	Intergenic	Intergenic	-127298	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
130979	chr2	87608471	87608630	+	0	NA	Intergenic	MER21A|LTR|ERVL	-21205	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
151531	chr21	46471021	46471280	+	0	NA	intron (NM_206891, intron 1 of 19)	AluJr|SINE|Alu	8679	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
99887	chr17	56737651	56737950	+	0	NA	Intergenic	Intergenic	96120	NM_001085430	339210		NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
238399	chrX	150482671	150483030	+	0	NA	intron (NM_001177466, intron 3 of 5)	intron (NM_001177466, intron 3 of 5)	37396	NM_001177466	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
236881	chrX	82127671	82128050	+	0	NA	Intergenic	Intergenic	925758	NM_003022	6451		NM_003022	ENSG00000131171	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate rich protein like	protein-coding
223599	chr8	144305101	144305500	+	0	NA	intron (NM_005526, intron 1 of 12)	AluSc|SINE|Alu	12015	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
146722	chr20	50595951	50596050	+	0	NA	intron (NM_080829, intron 15 of 21)	intron (NM_080829, intron 15 of 21)	10214	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
108397	chr18	69890471	69891200	+	0	NA	intron (NM_006566, intron 4 of 6)	L1M3|LINE|L1	57038	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
11358	chr1	89622751	89623250	+	0	NA	Intergenic	Intergenic	9894	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
33994	chr10	124677601	124677800	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-26328	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
111896	chr19	4676321	4676700	+	0	NA	non-coding (NR_169286, exon 24 of 24)	non-coding (NR_169286, exon 24 of 24)	-2772	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
151816	chr22	18361451	18361930	+	0	NA	TTS (NR_136569)	TTS (NR_136569)	24866	NR_136569	729461		NM_201401	ENSG00000274044	FAM230J	LINC01660	family with sequence similarity 230 member J	ncRNA
80540	chr16	2780301	2780580	+	0	NA	Intergenic	Intergenic	-3160	NM_007108	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
50013	chr12	42366321	42366580	+	0	NA	intron (NM_201515, intron 5 of 10)	AluSx|SINE|Alu	34652	NM_001364834	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
188707	chr5	157308871	157309930	+	0	NA	intron (NM_014376, intron 9 of 30)	intron (NM_014376, intron 9 of 30)	36277	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
48784	chr12	11730271	11730830	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	80876	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
192571	chr6	25720421	25720750	+	0	NA	Intergenic	L2c|LINE|L2	5977	NM_170745	221613		NM_170745	ENSG00000164508	H2AC1	H2AA|H2AFR|HIST1H2AA|HISTH2AA|TH2A|bA317E16.2	H2A clustered histone 1	protein-coding
72313	chr15	31229201	31229400	+	0	NA	exon (NM_001243538, exon 2 of 4)	exon (NM_001243538, exon 2 of 4)	1562	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
90779	chr17	2070171	2071130	+	0	NA	intron (NM_001282326, intron 3 of 6)	intron (NM_001282326, intron 3 of 6)	14340	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
169445	chr3	165861321	165861400	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-23937	NR_137635	590		NM_000055	ENSG00000114200	BCHE	BCHED|CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
32275	chr10	102105921	102106280	+	0	NA	TTS (NM_003893)	TTS (NM_003893)	8902	NM_003893	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
91933	chr17	7332251	7333450	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-3515	NM_001005408	84461		NM_032442	ENSG00000215041	NEURL4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding
74928	chr15	63734201	63734600	+	0	NA	intron (NM_003922, intron 13 of 77)	intron (NM_003922, intron 13 of 77)	99548	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
92905	chr17	16451821	16452450	+	0	NA	intron (NM_001113567, intron 2 of 3)	AluJb|SINE|Alu	10909	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
1687	chr1	4379601	4379800	+	0	NA	Intergenic	Intergenic	-32351	NR_027088	284661		NR_027088	ENSG00000235054	LINC01777	-	long intergenic non-protein coding RNA 1777	ncRNA
133246	chr2	113260821	113260900	+	0	NA	intron (NR_015377, intron 4 of 5)	(AG)n|Simple_repeat|Simple_repeat	18061	NM_013953	7849		NM_003466	ENSG00000125618	PAX8	PAX-8	paired box 8	protein-coding
40055	chr11	62724101	62724300	+	0	NA	intron (NM_001079559, intron 2 of 13)	intron (NM_001079559, intron 2 of 13)	3184	NR_037946	100534595		NR_037946	ENSG00000234857	HNRNPUL2-BSCL2	-	HNRNPUL2-BSCL2 readthrough (NMD candidate)	ncRNA
35513	chr11	1550771	1551200	+	0	NA	Intergenic	Intergenic	21286	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
213824	chr7	141557371	141559150	+	0	NA	intron (NM_018238, intron 2 of 15)	AluSx|SINE|Alu	6850	NM_001364948	55750		NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
141530	chr2	241273801	241274600	+	0	NA	non-coding (NR_168372, exon 2 of 2)	non-coding (NR_168372, exon 2 of 2)	-1314	NM_001243900	3069		NM_005336	ENSG00000115677	HDLBP	HBP|PRO2900|VGL	high density lipoprotein binding protein	protein-coding
168673	chr3	150575651	150576150	+	0	NA	intron (NM_001319043, intron 10 of 12)	AluSz|SINE|Alu	-27421	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
195254	chr6	36386851	36388630	+	0	NA	promoter-TSS (NM_016135)	promoter-TSS (NM_016135)	60	NM_001207036	51513		NM_016135	ENSG00000010030	ETV7	TEL-2|TEL2|TELB	ETS variant transcription factor 7	protein-coding
27218	chr10	28674951	28676050	+	0	NA	Intergenic	Intergenic	-2021	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
158886	chr3	9895271	9895430	+	0	NA	Intergenic	Intergenic	4740	NM_001363890	84522		NM_032492	ENSG00000171135	JAGN1	GL009|SCN6	jagunal homolog 1	protein-coding
126255	chr2	27089951	27090250	+	0	NA	intron (NM_006488, intron 1 of 7)	AluSp|SINE|Alu	3328	NM_000221	3795		NM_000221	ENSG00000138030	KHK	FRUCTU	ketohexokinase	protein-coding
220744	chr8	102238321	102240050	+	0	NA	promoter-TSS (NM_001172478)	promoter-TSS (NM_001172478)	-224	NM_015713	50484		NM_015713	ENSG00000048392	RRM2B	MTDPS8A|MTDPS8B|P53R2|RCDFRD	ribonucleotide reductase regulatory TP53 inducible subunit M2B	protein-coding
132975	chr2	111487601	111488080	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	7321	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
158507	chr3	3126271	3128230	+	0	NA	non-coding (NR_159944, exon 1 of 3)	non-coding (NR_159944, exon 1 of 3)	310	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
167991	chr3	136745671	136746030	+	0	NA	intron (NM_005862, intron 1 of 33)	MER30|DNA|hAT-Charlie	6528	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
172621	chr4	2517521	2517980	+	0	NA	Intergenic	AluSx|SINE|Alu	-17625	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
125828	chr2	24355051	24355150	+	0	NA	intron (NM_147152, intron 1 of 29)	intron (NM_147152, intron 1 of 29)	5436	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
238093	chrX	136572151	136572850	+	0	NA	Intergenic	Intergenic	21622	NR_030631	100126324		NR_030631	ENSG00000216060	MIR934	MIRN934|hsa-mir-934|mir-934	microRNA 934	ncRNA
12592	chr1	109033501	109033900	+	0	NA	intron (NM_001142550, intron 1 of 14)	AluSc5|SINE|Alu	8402	NM_001142551	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
73481	chr15	43689151	43690480	+	0	NA	intron (NR_146339, intron 1 of 39)	CpG	216	NR_146339	110006325		NR_146339		PPIP5K1P1-CATSPER2	-	PPIP5K1P1-CATSPER2 readthrough	pseudo
3574	chr1	16189121	16189580	+	0	NA	Intergenic	Plat_L3|LINE|CR1	23302	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
101094	chr17	64967901	64968100	+	0	NA	non-coding (NR_026903, exon 5 of 5)	non-coding (NR_026903, exon 5 of 5)	7585	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
111868	chr19	4643401	4643600	+	0	NA	intron (NM_001167942, intron 1 of 1)	intron (NM_001167942, intron 1 of 1)	3483	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
47201	chr12	818401	819350	+	0	NA	intron (NM_018979, intron 2 of 27)	L1MB5|LINE|L1	65952	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
11196	chr1	88457271	88457490	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-226764	NM_001320707	5586		NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
209716	chr7	86970001	86970200	+	0	NA	intron (NM_001142749, intron 1 of 21)	intron (NM_001142749, intron 1 of 21)	-4201	NM_152748	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
36247	chr11	3757521	3757780	+	0	NA	intron (NM_001365128, intron 10 of 32)	AluSq2|SINE|Alu	39896	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
52964	chr12	57469421	57469750	+	0	NA	exon (NM_005269, exon 11 of 12)	exon (NM_005269, exon 11 of 12)	8282	NM_001319851	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
181731	chr5	50690521	50690780	+	0	NA	intron (NM_024615, intron 2 of 25)	L2c|LINE|L2	23236	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
53270	chr12	63802001	63802230	+	0	NA	exon (NM_014254, exon 4 of 6)	exon (NM_014254, exon 4 of 6)	20041	NR_126167	104169670		NR_126167	ENSG00000255850	RXYLT1-AS1	TMEM5-AS1	RXYLT1 antisense RNA 1	ncRNA
105265	chr17	82446351	82447100	+	0	NA	intron (NR_036517, intron 1 of 4)	intron (NR_036517, intron 1 of 4)	3001	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
123188	chr19	52525721	52526180	+	0	NA	Intergenic	AluY|SINE|Alu	-1706	NM_001321425	388558		NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
203026	chr6	163667671	163668030	+	0	NA	intron (NR_134620, intron 1 of 1)	intron (NR_134620, intron 1 of 1)	3634	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
149238	chr21	25575521	25575780	+	0	NA	TTS (NR_001458)	TTS (NR_001458)	1670	NR_030784	406947		NR_030784	ENSG00000283904	MIR155	MIRN155|miRNA155|mir-155	microRNA 155	ncRNA
199967	chr6	127968601	127969000	+	0	NA	TTS (NM_002844)	TTS (NM_002844)	-50169	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
212797	chr7	130204801	130206100	+	0	NA	promoter-TSS (NM_001363478)	promoter-TSS (NM_001363478)	-44	NR_156699	84928		NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
148928	chr21	9324521	9325550	+	0	NA	Intergenic	CpG	-195274	NR_038329	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
55683	chr12	107475851	107476150	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	-104874	NM_001017523	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
93528	chr17	19033271	19033430	+	0	NA	intron (NM_006613, intron 3 of 4)	MSTB|LTR|ERVL-MaLR	13607	NM_006613	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
14882	chr1	146711201	146711400	+	0	NA	intron (NR_103556, intron 27 of 55)	intron (NR_103556, intron 27 of 55)	224968	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
12261	chr1	100452401	100453400	+	0	NA	intron (NM_001319212, intron 7 of 13)	intron (NM_001319212, intron 7 of 13)	-85239	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
221546	chr8	124790151	124790450	+	0	NA	Intergenic	Intergenic	-31685	NR_039806	100616221		NR_039806	ENSG00000283609	MIR4662A	-	microRNA 4662a	ncRNA
79972	chr16	1786351	1786800	+	0	NA	non-coding (NR_104318, exon 2 of 6)	non-coding (NR_104318, exon 2 of 6)	3615	NR_104318	10101		NM_012225	ENSG00000095906	NUBP2	CFD1|CIAO6|NBP 2|NUBP1	NUBP iron-sulfur cluster assembly factor 2, cytosolic	protein-coding
216152	chr8	11562271	11562430	+	0	NA	intron (NM_001715, intron 11 of 12)	intron (NM_001715, intron 11 of 12)	-14185	NR_040035	83655		NM_054029	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
183900	chr5	87379071	87379600	+	0	NA	intron (NM_022650, intron 18 of 24)	intron (NM_022650, intron 18 of 24)	33569	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
190326	chr5	179621001	179621300	+	0	NA	intron (NM_001364250, intron 2 of 12).2	intron (NM_001364250, intron 2 of 12).2	2251	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
86155	chr16	57755321	57755830	+	0	NA	intron (NM_005886, intron 16 of 19)	intron (NM_005886, intron 16 of 19)	16777	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
239180	chrY	12544651	12544750	+	0	NA	Intergenic	Intergenic	-117667	NR_001545	64595		NR_001545	ENSG00000114374	TTTY15	NCRNA00138	testis expressed transcript, Y-linked 15	ncRNA
79301	chr16	548401	549930	+	0	NA	exon (NM_005632, exon 5 of 14)	exon (NM_005632, exon 5 of 14)	5888	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
142252	chr20	3161351	3162230	+	0	NA	TTS (NM_001365618)	TTS (NM_001365618)	-1925	NM_001267584	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
217742	chr8	30729001	30729530	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-1266	NM_001195103	2936		NM_000637	ENSG00000104687	GSR	GR|GSRD|HEL-75|HEL-S-122m	glutathione-disulfide reductase	protein-coding
139686	chr2	227326751	227326850	+	0	NA	promoter-TSS (NM_020194)	promoter-TSS (NM_020194)	-712	NM_020194	56947		NM_020194	ENSG00000168958	MFF	C2orf33|EMPF2|GL004	mitochondrial fission factor	protein-coding
175911	chr4	80185721	80186480	+	0	NA	intron (NM_020226, intron 1 of 9)	intron (NM_020226, intron 1 of 9)	830	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
220643	chr8	101051651	101052150	+	0	NA	promoter-TSS (NR_033962)	promoter-TSS (NR_033962)	-154	NR_033962	441374		NR_033962	ENSG00000248599	SLEAR	-	STAT1 regulated ILF2 complex interacting lncRNA	ncRNA
113849	chr19	10639151	10640200	+	0	NA	intron (NM_001363611, intron 20 of 22)	AluSx1|SINE|Alu	14122	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
74364	chr15	58731721	58732300	+	0	NA	intron (NM_001320570, intron 1 of 14)	intron (NM_001320570, intron 1 of 14)	17697	NM_001110	102		NM_001110	ENSG00000137845	ADAM10	AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz	ADAM metallopeptidase domain 10	protein-coding
41442	chr11	66081221	66082650	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	11663	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
122725	chr19	50005501	50005900	+	0	NA	intron (NM_001308420, intron 5 of 12)	L1MB7|LINE|L1	19672	NM_001308420	51231		NM_016440	ENSG00000105053	VRK3	-	VRK serine/threonine kinase 3	protein-coding
207486	chr7	44641371	44641530	+	0	NA	intron (NM_001363523, intron 2 of 23)	AluSx|SINE|Alu	34823	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
183650	chr5	80254611	80255100	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	1193	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
210466	chr7	100138071	100138430	+	0	NA	Intergenic	Intergenic	-10668	NM_001008395	389541		NM_001008395	ENSG00000188186	LAMTOR4	C7orf59	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding
184383	chr5	98839521	98840030	+	0	NA	Intergenic	MER61C|LTR|ERV1	66112	NM_001366508	285704		NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule BMP co-receptor b	protein-coding
83706	chr16	28495371	28495680	+	0	NA	exon (NM_018690, exon 2 of 4)	exon (NM_018690, exon 2 of 4)	882	NM_018690	55911		NM_018690	ENSG00000184730	APOBR	APOB100R|APOB48R	apolipoprotein B receptor	protein-coding
87504	chr16	71842051	71842550	+	0	NA	Intergenic	Intergenic	-3676	NM_001137675	342371		NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1 like	protein-coding
171079	chr3	195478721	195478980	+	0	NA	Intergenic	Intergenic	-35830	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
196913	chr6	52377001	52377200	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	14949	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
118401	chr19	35743801	35747050	+	0	NA	promoter-TSS (NM_144987)	promoter-TSS (NM_144987)	-7	NR_163171	199746		NM_144987	ENSG00000161265	U2AF1L4	U2AF1-RS3|U2AF1L3|U2AF1L3V1|U2AF1RS3|U2af26	U2 small nuclear RNA auxiliary factor 1 like 4	protein-coding
128454	chr2	55616451	55617000	+	0	NA	intron (NM_020463, intron 1 of 14)	intron (NM_020463, intron 1 of 14)	897	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
163218	chr3	50249951	50250050	+	0	NA	intron (NM_001166425, intron 1 of 8)	intron (NM_001166425, intron 1 of 8)	3090	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
32622	chr10	103666271	103666430	+	0	NA	intron (NM_001365079, intron 1 of 8)	intron (NM_001365079, intron 1 of 8)	11865	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
13577	chr1	116150251	116150550	+	0	NA	Intergenic	L2a|LINE|L2	38645	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
100238	chr17	59352871	59353430	+	0	NA	intron (NM_001005404, intron 1 of 4)	intron (NM_001005404, intron 1 of 4)	-12933	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
131299	chr2	96109001	96109630	+	0	NA	Intergenic	Intergenic	7256	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
180814	chr5	32429901	32430100	+	0	NA	intron (NR_144318, intron 2 of 18)	AluJr|SINE|Alu	14740	NM_016107	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
201297	chr6	144341951	144342350	+	0	NA	intron (NM_007124, intron 1 of 73)	L1MB7|LINE|L1	50413	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
160692	chr3	32303071	32304330	+	0	NA	intron (NM_001320308, intron 1 of 2)	L1MC4|LINE|L1	65020	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
196282	chr6	42981501	42981700	+	0	NA	Intergenic	Intergenic	-2419	NR_133009	5190		NM_000287	ENSG00000124587	PEX6	HMLR2|PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
136284	chr2	174719801	174720030	+	0	NA	non-coding (NR_002315, exon 1 of 1)	non-coding (NR_002315, exon 1 of 1)	115	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
68265	chr14	77037951	77038730	+	0	NA	Intergenic	Intergenic	-2709	NR_110554	283575		NR_110554	ENSG00000246548	LINC02288	-	long intergenic non-protein coding RNA 2288	ncRNA
77699	chr15	85667671	85669300	+	0	NA	intron (NM_007200, intron 13 of 36)	intron (NM_007200, intron 13 of 36)	48535	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
26258	chr10	14660771	14660930	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-56449	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
43047	chr11	74170641	74172150	+	0	NA	promoter-TSS (NM_001286577)	promoter-TSS (NM_001286577)	106	NM_001271593	51400		NM_016147	ENSG00000214517	PPME1	ABDH19|PME-1	protein phosphatase methylesterase 1	protein-coding
189430	chr5	172868621	172868880	+	0	NA	intron (NM_001031711, intron 1 of 9)	L1MC1|LINE|L1	34499	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
29276	chr10	69201001	69201200	+	0	NA	intron (NM_001301683, intron 12 of 15)	intron (NM_001301683, intron 12 of 15)	-19232	NM_025130	80201		NM_025130	ENSG00000156510	HKDC1	RP92	hexokinase domain containing 1	protein-coding
54621	chr12	92595271	92595650	+	0	NA	Intergenic	L1PA15|LINE|L1	-107383	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
16170	chr1	153779101	153779930	+	0	NA	intron (NM_001317929, intron 9 of 9)	intron (NM_001317929, intron 9 of 9)	4108	NM_001317929	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
224641	chr9	20616801	20617030	+	0	NA	intron (NM_001286691, intron 2 of 10)	L1ME3G|LINE|L1	5023	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
159818	chr3	16375651	16375950	+	0	NA	intron (NM_015150, intron 5 of 9)	intron (NM_015150, intron 5 of 9)	110588	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
9367	chr1	47228351	47228950	+	0	NA	intron (NM_003189, intron 3 of 5)	intron (NM_003189, intron 3 of 5)	3065	NM_001287347	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
119898	chr19	41554801	41556150	+	0	NA	intron (NM_001288773, intron 1 of 7)	LTR49-int|LTR|ERV1	5957	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
229989	chr9	126834801	126835000	+	0	NA	3' UTR (NM_001135776, exon 2 of 2)	3' UTR (NM_001135776, exon 2 of 2)	-25739	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
109064	chr18	79902201	79902400	+	0	NA	TTS (NM_025078)	TTS (NM_025078)	38632	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
11999	chr1	95071371	95071680	+	0	NA	intron (NM_144988, intron 1 of 3)	AluSx1|SINE|Alu	1426	NM_001305242	199857		NM_144988	ENSG00000172339	ALG14	CMS15|IDDEBF|MEPCA	ALG14 UDP-N-acetylglucosaminyltransferase subunit	protein-coding
15991	chr1	151980451	151980750	+	0	NA	Intergenic	Intergenic	13259	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
68290	chr14	77140451	77140630	+	0	NA	intron (NM_174976, intron 1 of 2)	CpG	204	NM_001364172	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
206213	chr7	28410771	28410930	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	-1668	NM_182898	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
168646	chr3	150372551	150373350	+	0	NA	Intergenic	Intergenic	-35348	NM_014779	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
133273	chr2	113502821	113504050	+	0	NA	Intergenic	CpG	4351	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
60942	chr13	46341271	46341630	+	0	NA	TTS (NM_001286765)	TTS (NM_001286765)	-43606	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
180381	chr5	7871621	7872100	+	0	NA	intron (NR_134482, intron 2 of 13)	intron (NR_134482, intron 2 of 13)	2712	NR_157174	4552		NM_002454	ENSG00000124275	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
113221	chr19	8472851	8473150	+	0	NA	intron (NM_001297418, intron 9 of 13)	AluJb|SINE|Alu	28025	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
206982	chr7	38318621	38319230	+	0	NA	Intergenic	L2c|LINE|L2	-22652	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
112388	chr19	6074871	6075030	+	0	NA	intron (NM_000635, intron 1 of 17)	MLT1A|LTR|ERVL-MaLR	35550	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
191997	chr6	16277451	16277550	+	0	NA	intron (NM_006877, intron 5 of 8)	intron (NM_006877, intron 5 of 8)	38913	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
57351	chr12	121774251	121774350	+	0	NA	intron (NM_001080825, intron 9 of 11)	intron (NM_001080825, intron 9 of 11)	19388	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
214944	chr7	151759501	151760100	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	-23486	NM_001304527	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
216805	chr8	22557121	22557580	+	0	NA	intron (NM_005775, intron 4 of 20)	intron (NM_005775, intron 4 of 20)	5423	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
162824	chr3	49163951	49164500	+	0	NA	5' UTR (NM_022903, exon 2 of 2)	5' UTR (NM_022903, exon 2 of 2)	2106	NM_022903	64925		NM_022903	ENSG00000177352	CCDC71	-	coiled-coil domain containing 71	protein-coding
173093	chr4	6278551	6279200	+	0	NA	intron (NM_006005, intron 2 of 7)	intron (NM_006005, intron 2 of 7)	9025	NM_006005	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
29083	chr10	67913971	67914330	+	0	NA	intron (NM_001142498, intron 7 of 7)	AluSg|SINE|Alu	22748	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
117400	chr19	19615951	19616380	+	0	NA	intron (NM_025245, intron 1 of 7)	intron (NM_025245, intron 1 of 7)	2522	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
136330	chr2	175167221	175168880	+	0	NA	promoter-TSS (NR_030630)	promoter-TSS (NR_030630)	153	NR_045774	1386		NM_001880	ENSG00000115966	ATF2	CRE-BP1|CREB-2|CREB2|HB16|TREB7	activating transcription factor 2	protein-coding
154114	chr22	31103151	31103450	+	0	NA	intron (NR_168475, intron 20 of 20)	L2c|LINE|L2	4268	NM_080430	140606		NM_080430	ENSG00000198832	SELENOM	SELM|SEPM	selenoprotein M	protein-coding
114194	chr19	11417051	11417730	+	0	NA	intron (NM_001161616, intron 2 of 18)	AluSz|SINE|Alu	1924	NM_001161616	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
216661	chr8	22134301	22134850	+	0	NA	Intergenic	Intergenic	-3523	NM_018411	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
64554	chr14	24609571	24610480	+	0	NA	promoter-TSS (NM_001270781)	promoter-TSS (NM_001270781)	-340	NM_033423	2999		NM_033423	ENSG00000100450	GZMH	CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2	granzyme H	protein-coding
39902	chr11	62509671	62510450	+	0	NA	intron (NM_024060, intron 4 of 5)	AluSx3|SINE|Alu	35604	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
221240	chr8	122472901	122473100	+	0	NA	intron (NR_131202, intron 2 of 3)	L1PREC2|LINE|L1	95644	NR_131202	105375734		NR_131202		SMILR	-	smooth muscle induced lncRNA, enhancer of proliferation	ncRNA
129082	chr2	65110021	65110280	+	0	NA	intron (NM_004161, intron 1 of 5)	L1MD3|LINE|L1	19956	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
15782	chr1	151194951	151195250	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3452	NM_001135638	8394		NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein-coding
31753	chr10	97828551	97829180	+	0	NA	intron (NR_108035, intron 2 of 2)	intron (NR_108035, intron 2 of 2)	20933	NR_108035	100505561		NR_108035	ENSG00000227356	GOLGA7B-DT	LINC00866	GOLGA7B divergent transcript	ncRNA
39371	chr11	59680351	59680780	+	0	NA	Intergenic	Intergenic	-11528	NM_152716	219988		NM_152716	ENSG00000166889	PATL1	Pat1b|hPat1b	PAT1 homolog 1, processing body mRNA decay factor	protein-coding
73163	chr15	41465521	41466080	+	0	NA	intron (NM_015138, intron 5 of 17)	intron (NM_015138, intron 5 of 17)	-28074	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
157928	chr22	49783451	49783750	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	40731	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
168990	chr3	152413271	152413930	+	0	NA	intron (NM_001314057, intron 3 of 11)	intron (NM_001314057, intron 3 of 11)	-72610	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
48145	chr12	7917101	7917600	+	0	NA	Intergenic	LTR41B|LTR|ERVL	18837	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
99272	chr17	49745601	49746050	+	0	NA	intron (NM_030802, intron 1 of 7)	L1MC5a|LINE|L1	18306	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
140064	chr2	231411871	231412830	+	0	NA	Intergenic	CpG	16640	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
106089	chr18	9140451	9141180	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	3252	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
42088	chr11	67504901	67505400	+	0	NA	intron (NM_001130848, intron 1 of 23)	CpG	213	NM_004910	9600		NM_004910	ENSG00000110697	PITPNM1	DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9	phosphatidylinositol transfer protein membrane associated 1	protein-coding
226964	chr9	80345351	80345450	+	0	NA	Intergenic	L1P1|LINE|L1	370377	NR_121212	101927477		NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
236087	chrX	56776301	56776880	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-39006	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
147507	chr20	59178851	59178950	+	0	NA	intron (NM_178457, intron 1 of 5)	MIR|SINE|MIR	15079	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
185992	chr5	133610951	133611730	+	0	NA	intron (NM_015082, intron 1 of 15)	CpG	1201	NM_015082	23105		NM_015082	ENSG00000053108	FSTL4	-	follistatin like 4	protein-coding
64042	chr14	22532801	22533000	+	0	NA	Intergenic	Intergenic	24162	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
21914	chr1	207831651	207832680	+	0	NA	Intergenic	Intergenic	-9462	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
171346	chr3	196052571	196052730	+	0	NA	intron (NM_001313966, intron 16 of 16)	AluSp|SINE|Alu	29440	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
3484	chr1	16012721	16013880	+	0	NA	TTS (NM_001349685)	TTS (NM_001349685)	4743	NM_001349685	27129		NM_014424	ENSG00000173641	HSPB7	cvHSP	heat shock protein family B (small) member 7	protein-coding
55294	chr12	103441251	103442180	+	0	NA	intron (NR_103526, intron 2 of 10)	intron (NR_103526, intron 2 of 10)	54253	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
209267	chr7	75904671	75905230	+	0	NA	Intergenic	AluSc8|SINE|Alu	-10205	NM_001382658	5447		NM_000941	ENSG00000127948	POR	CPR|CYPOR|P450R	cytochrome p450 oxidoreductase	protein-coding
139269	chr2	219459251	219459900	+	0	NA	intron (NM_005876, intron 6 of 40)	intron (NM_005876, intron 6 of 40)	-1237	NM_001173476	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
38950	chr11	47521671	47522080	+	0	NA	intron (NM_001376409, intron 1 of 15)	intron (NM_001376409, intron 1 of 15)	1956	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
220676	chr8	101198571	101198730	+	0	NA	3' UTR (NM_001267708, exon 6 of 6)	3' UTR (NM_001267708, exon 6 of 6)	7023	NM_016096	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
6744	chr1	30717861	30720350	+	0	NA	non-coding (NR_034182, exon 1 of 4)	non-coding (NR_034182, exon 1 of 4)	333	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
90846	chr17	2352271	2353400	+	0	NA	intron (NM_001346700, intron 2 of 22)	AluY|SINE|Alu	15334	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
135252	chr2	159718071	159719480	+	0	NA	intron (NM_001376235, intron 3 of 11)	intron (NM_001376235, intron 3 of 11)	6269	NM_001376255	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
61814	chr13	75635521	75637250	+	0	NA	promoter-TSS (NR_120410)	promoter-TSS (NR_120410)	55	NM_001306080	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
120170	chr19	42249701	42250230	+	0	NA	intron (NM_001308402, intron 2 of 3)	intron (NM_001308402, intron 2 of 3)	3934	NM_001308402	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
235561	chrX	47312351	47312830	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	-57988	NM_003446	7712		NM_003446	ENSG00000147117	ZNF157	HZF22	zinc finger protein 157	protein-coding
95200	chr17	35235671	35236580	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-6947	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
229548	chr9	122906951	122907280	+	0	NA	TTS (NM_006626)	TTS (NM_006626)	-1756	NM_001100588	54542		NM_018835	ENSG00000056586	RC3H2	MNAB|RNF164	ring finger and CCCH-type domains 2	protein-coding
190277	chr5	179552171	179552550	+	0	NA	intron (NM_025158, intron 1 of 17)	intron (NM_025158, intron 1 of 17)	1806	NM_025158	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
147886	chr20	62866351	62866650	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4678	NM_001301726	10732		NM_006602	ENSG00000101190	TCFL5	CHA|E2BP-1|Figlb|SOSF1|bHLHe82	transcription factor like 5	protein-coding
131688	chr2	97731151	97731850	+	0	NA	intron (NM_001079, intron 4 of 13)	intron (NM_001079, intron 4 of 13)	-1800	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
35970	chr11	2850851	2851150	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	10569	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
138485	chr2	207107451	207107750	+	0	NA	intron (NR_073108, intron 3 of 4)	intron (NR_073108, intron 3 of 4)	2473	NR_036227	100423036		NR_036227	ENSG00000253008	MIR2355	mir-2355	microRNA 2355	ncRNA
114929	chr19	13964601	13965230	+	0	NA	intron (NM_002918, intron 16 of 20)	intron (NM_002918, intron 16 of 20)	-11523	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
154636	chr22	36324601	36325100	+	0	NA	intron (NM_002473, intron 5 of 40)	intron (NM_002473, intron 5 of 40)	-37943	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
103374	chr17	78131301	78133000	+	0	NA	intron (NM_152468, intron 3 of 15)	CpG-11726	277	NM_007267	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
205604	chr7	22001321	22001630	+	0	NA	Intergenic	Intergenic	-55576	NM_001127370	55536		NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
221573	chr8	125158851	125158950	+	0	NA	intron (NR_146191, intron 5 of 8)	intron (NR_146191, intron 5 of 8)	67040	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
236314	chrX	68791921	68792180	+	0	NA	Intergenic	LTR8|LTR|ERV1	-36971	NM_004429	1947		NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
134008	chr2	130995671	130995900	+	0	NA	intron (NM_001375902, intron 2 of 10)	L1MEg|LINE|L1	32130	NM_001375904	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
36191	chr11	3377501	3377780	+	0	NA	non-coding (NR_040083, exon 2 of 6)	non-coding (NR_040083, exon 2 of 6)	1506	NM_007152	7748		NM_007152	ENSG00000005801	ZNF195	HRF1|ZNFP104	zinc finger protein 195	protein-coding
14277	chr1	143637601	143637800	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	61919	NR_104078	101954269		NR_104078	ENSG00000207349	RNVU1-17	RNU1-127|vU1.17	RNA, variant U1 small nuclear 17	snRNA
212218	chr7	120941071	120941600	+	0	NA	Intergenic	Intergenic	-9442	NM_198267	54556		NM_019071	ENSG00000071243	ING3	Eaf4|ING2|MEAF4|p47ING3	inhibitor of growth family member 3	protein-coding
36898	chr11	10782301	10782700	+	0	NA	Intergenic	AluSp|SINE|Alu	19108	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
205954	chr7	26149501	26149980	+	0	NA	Intergenic	AluJo|SINE|Alu	-2458	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
2900	chr1	11672021	11672280	+	0	NA	intron (NM_018438, intron 4 of 5)	intron (NM_018438, intron 4 of 5)	7950	NM_018438	26270		NM_018438	ENSG00000116663	FBXO6	FBG2|FBS2|FBX6|Fbx6b	F-box protein 6	protein-coding
106383	chr18	13369501	13369900	+	0	NA	intron (NM_001378098, intron 1 of 5)	intron (NM_001378098, intron 1 of 5)	31097	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
138618	chr2	209789871	209790380	+	0	NA	intron (NM_001371986, intron 6 of 64)	intron (NM_001371986, intron 6 of 64)	18132	NM_032504	285175		NM_032504	ENSG00000144406	UNC80	C2orf21|UNC-80	unc-80 homolog, NALCN channel complex subunit	protein-coding
87115	chr16	68738371	68738930	+	0	NA	intron (NM_004360, intron 2 of 15)	intron (NM_004360, intron 2 of 15)	1358	NM_001317185	999		NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
146118	chr20	48617601	48618150	+	0	NA	Intergenic	Intergenic	210124	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
131415	chr2	96283851	96283950	+	0	NA	exon (NM_014014, exon 32 of 45)	exon (NM_014014, exon 32 of 45)	17675	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
208788	chr7	73586921	73587180	+	0	NA	Intergenic	Intergenic	-8471	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
214022	chr7	143266401	143266950	+	0	NA	intron (NM_001143679, intron 4 of 6)	AluJb|SINE|Alu	3234	NM_015917	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
49766	chr12	31802651	31802750	+	0	NA	Intergenic	AluSz6|SINE|Alu	-10402	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
1033	chr1	1877021	1877330	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSz|SINE|Alu	13912	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
81697	chr16	11236671	11237030	+	0	NA	Intergenic	Intergenic	19332	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
99625	chr17	50564551	50564650	+	0	NA	intron (NM_198376, intron 1 of 34)	intron (NM_198376, intron 1 of 34)	-2492	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
57896	chr12	123449571	123450050	+	0	NA	Intergenic	AluJr|SINE|Alu	-8329	NR_104103	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
199055	chr6	111522401	111522980	+	0	NA	intron (NR_034109, intron 1 of 1)	L1MEc|LINE|L1	-38975	NM_001286432	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
205703	chr7	23300751	23300850	+	0	NA	intron (NM_138446, intron 1 of 3)	intron (NM_138446, intron 1 of 3)	1461	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
20842	chr1	201739651	201741080	+	0	NA	intron (NM_001167738, intron 1 of 26)	intron (NM_001167738, intron 1 of 26)	465	NM_001167738	89796		NM_020443	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding
119866	chr19	41446271	41446850	+	0	NA	Intergenic	L2b|LINE|L2	3404	NM_001130514	100170765		NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
145975	chr20	46346821	46347080	+	0	NA	3' UTR (NM_001281457, exon 10 of 10)	3' UTR (NM_001281457, exon 10 of 10)	17475	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
193808	chr6	31459321	31459580	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-3730	NR_040662	10866		NR_040662	ENSG00000206337	HCP5	6S2650E|D6S2650E|P5-1	HLA complex P5	ncRNA
19390	chr1	174030551	174030850	+	0	NA	Intergenic	AluJo|SINE|Alu	-8343	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
173399	chr4	7985771	7986400	+	0	NA	intron (NM_001286688, intron 11 of 14)	intron (NM_001286688, intron 11 of 14)	19296	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
198123	chr6	90399901	90400930	+	0	NA	Intergenic	Intergenic	87673	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
201718	chr6	149745971	149747380	+	0	NA	promoter-TSS (NR_104456)	promoter-TSS (NR_104456)	-146	NM_198887	348995		NM_024647	ENSG00000120253	NUP43	bA350J20.1|p42	nucleoporin 43	protein-coding
72205	chr15	30171371	30171530	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-24586	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
94228	chr17	28655171	28655850	+	0	NA	intron (NR_045585, intron 1 of 2)	intron (NR_045585, intron 1 of 2)	6396	NM_006923	6388		NM_006923	ENSG00000132581	SDF2	-	stromal cell derived factor 2	protein-coding
71233	chr14	105176071	105177130	+	0	NA	exon (NM_001318380, exon 4 of 5)	exon (NM_001318380, exon 4 of 5)	4712	NM_177533	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
61037	chr13	48220651	48222150	+	0	NA	Intergenic	Intergenic	-11806	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
133540	chr2	120269301	120269580	+	0	NA	intron (NM_002881, intron 1 of 4)	LTR12_|LTR|ERV1	16588	NM_001369400	5899		NM_002881	ENSG00000144118	RALB	-	RAS like proto-oncogene B	protein-coding
128340	chr2	54724561	54725630	+	0	NA	promoter-TSS (NM_001039753)	promoter-TSS (NM_001039753)	83	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
156433	chr22	41232401	41233050	+	0	NA	intron (NM_138481, intron 5 of 5)	intron (NM_138481, intron 5 of 5)	8206	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
163797	chr3	52402471	52402980	+	0	NA	intron (NM_004656, intron 15 of 16)	intron (NM_004656, intron 15 of 16)	7283	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
54570	chr12	92362421	92362980	+	0	NA	Intergenic	Intergenic	-58831	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
141236	chr2	239624951	239625350	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-137710	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
19365	chr1	173865701	173866650	+	0	NA	promoter-TSS (NR_003939)	promoter-TSS (NR_003939)	115	NR_132783	106635533		NR_132783		SNORA103	-	small nucleolar RNA, H/ACA box 103	snoRNA
128875	chr2	64055371	64055600	+	0	NA	Intergenic	L1ME5|LINE|L1	-36057	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
120723	chr19	45333901	45334130	+	0	NA	Intergenic	Intergenic	-6735	NM_177417	147700		NM_145275	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
46268	chr11	124762901	124763650	+	0	NA	promoter-TSS (NM_138961)	intron (NR_120579, intron 1 of 1)	844	NR_120579	101929340		NR_120577	ENSG00000250073	ESAM-AS1	-	ESAM antisense RNA 1	ncRNA
139137	chr2	219001321	219002300	+	0	NA	promoter-TSS (NR_029867)	promoter-TSS (NR_029867)	-102	NR_029867	494324		NR_029867	ENSG00000198973	MIR375	MIRN375|hsa-mir-375|miRNA375|mir-375	microRNA 375	ncRNA
117622	chr19	23272321	23272630	+	0	NA	intron (NR_103741, intron 1 of 4)	intron (NR_103741, intron 1 of 4)	1776	NR_103742	100132815		NR_103741		IPO5P1	-	importin 5 pseudogene 1	pseudo
180506	chr5	14270271	14270450	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	127018	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
209139	chr7	75096151	75096750	+	0	NA	intron (NM_001368302, intron 1 of 15)	AluSq2|SINE|Alu	2418	NM_001368302	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
118434	chr19	35844621	35844880	+	0	NA	intron (NM_004646, intron 14 of 28)	intron (NM_004646, intron 14 of 28)	7754	NM_004646	4868		NM_004646	ENSG00000161270	NPHS1	CNF|NPHN|nephrin	NPHS1 adhesion molecule, nephrin	protein-coding
161777	chr3	44988051	44988400	+	0	NA	intron (NR_023353, intron 1 of 6)	L1MC4a|LINE|L1	11976	NR_023353	23016		NM_015004	ENSG00000075914	EXOSC7	EAP1|RRP42|Rrp42p|hRrp42p|p8	exosome component 7	protein-coding
188252	chr5	151070901	151071300	+	0	NA	intron (NM_001252390, intron 1 of 17)	L1MC1|LINE|L1	-5969	NM_001258456	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
9198	chr1	45614951	45615050	+	0	NA	intron (NM_001195193, intron 7 of 12)	intron (NM_001195193, intron 7 of 12)	9054	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
181603	chr5	43531401	43531630	+	0	NA	intron (NM_183323, intron 9 of 10)	AluSx|SINE|Alu	-16367	NM_198566	375444		NM_198566	ENSG00000172244	C5orf34	-	chromosome 5 open reading frame 34	protein-coding
171379	chr3	196120301	196121000	+	0	NA	Intergenic	Intergenic	-21986	NR_034088	401109		NM_001001699	ENSG00000224652	LINC00885	-	long intergenic non-protein coding RNA 885	ncRNA
136798	chr2	181588751	181588850	+	0	NA	intron (NR_027690, intron 2 of 11)	L1MA8|LINE|L1	68305	NM_201548	375298		NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding
151165	chr21	44938371	44938750	+	0	NA	intron (NR_027129, intron 1 of 3)	AluSz6|SINE|Alu	-1137	NM_001316988	85395		NM_058190	ENSG00000160256	SLX9	C21orf70|FAM207A|PRED56	SLX9 ribosome biogenesis factor	protein-coding
65790	chr14	54572271	54572530	+	0	NA	intron (NM_015589, intron 2 of 12)	intron (NM_015589, intron 2 of 12)	4788	NM_001161576	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
185485	chr5	131298871	131299030	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	34897	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
87534	chr16	71904251	71904780	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluJr|SINE|Alu	8984	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
83736	chr16	28612071	28612930	+	0	NA	intron (NM_177536, intron 2 of 5)	intron (NM_177536, intron 2 of 5)	-2456	NM_177529	6817		NM_001055	ENSG00000196502	SULT1A1	HAST1/HAST2|P-PST|P-PST 1|PST|ST1A1|ST1A3|STP|STP1|TSPST1|ts-PST	sulfotransferase family 1A member 1	protein-coding
184083	chr5	93593571	93594080	+	0	NA	exon (NM_005654, exon 3 of 3)	exon (NM_005654, exon 3 of 3)	10603	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
226132	chr9	63346001	63346750	+	0	NA	non-coding (NR_160666, exon 4 of 4)	non-coding (NR_160666, exon 4 of 4)	11837	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
70959	chr14	104688341	104688850	+	0	NA	Intergenic	MIRb|SINE|MIR	-1011	NM_032714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
140408	chr2	233097721	233098000	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	37518	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
79331	chr16	575621	576080	+	0	NA	exon (NM_148920, exon 3 of 10)	exon (NM_148920, exon 3 of 10)	5882	NM_004204	9091		NM_004204	ENSG00000007541	PIGQ	DEE77|EIEE77|GPI1|GPIBD19|MCAHS4|c407A10.1	phosphatidylinositol glycan anchor biosynthesis class Q	protein-coding
155947	chr22	39683971	39684500	+	0	NA	intron (NM_001003406, intron 34 of 35)	intron (NM_001003406, intron 34 of 35)	113482	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
181953	chr5	55033701	55033900	+	0	NA	exon (NM_002104, exon 5 of 5)	exon (NM_002104, exon 5 of 5)	9544	NM_002104	3003		NM_002104	ENSG00000113088	GZMK	TRYP2	granzyme K	protein-coding
190026	chr5	177503521	177503780	+	0	NA	3' UTR (NM_001375794, exon 6 of 6)	3' UTR (NM_001375794, exon 6 of 6)	-6045	NM_213636	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
65765	chr14	54396551	54397980	+	0	NA	intron (NM_001130851, intron 1 of 6)	CpG	258	NM_005192	1033		NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
185618	chr5	131470451	131470750	+	0	NA	intron (NM_001164387, intron 17 of 28)	intron (NM_001164387, intron 17 of 28)	164629	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
222645	chr8	141140121	141140380	+	0	NA	intron (NM_014957, intron 3 of 22)	intron (NM_014957, intron 3 of 22)	11661	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
165250	chr3	73044201	73044680	+	0	NA	intron (NM_001318025, intron 2 of 7)	AluSx3|SINE|Alu	-17219	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
58794	chr12	132767521	132767780	+	0	NA	Intergenic	Intergenic	-5818	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
206495	chr7	33108791	33109930	+	0	NA	promoter-TSS (NM_203288)	promoter-TSS (NM_203288)	44	NM_203288	6100		NM_203288	ENSG00000164610	RP9	PAP-1|PAP1	RP9 pre-mRNA splicing factor	protein-coding
215117	chr7	155343371	155343750	+	0	NA	Intergenic	Intergenic	24373	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
107890	chr18	56654251	56654550	+	0	NA	intron (NM_001382485, intron 1 of 26)	AluSc|SINE|Alu	2703	NM_001382485	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
203326	chr6	170183551	170183850	+	0	NA	Intergenic	(TGATGA)n|Simple_repeat|Simple_repeat	23058	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
163542	chr3	51677051	51677650	+	0	NA	intron (NM_001243727, intron 2 of 3)	intron (NM_001243727, intron 2 of 3)	5723	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
181704	chr5	50646651	50646950	+	0	NA	Intergenic	L1MEd|LINE|L1	-19131	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
237608	chrX	123972771	123972950	+	0	NA	intron (NM_001282418, intron 2 of 33)	AluSz|SINE|Alu	11154	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
66148	chr14	60272201	60272430	+	0	NA	intron (NM_177951, intron 2 of 3)	intron (NM_177951, intron 2 of 3)	23094	NM_021003	5494		NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
168679	chr3	150589801	150590000	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-13421	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
120624	chr19	45057471	45057630	+	0	NA	intron (NM_001278439, intron 5 of 19)	L2b|LINE|L2	-18077	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
182928	chr5	70773801	70774200	+	0	NA	TTS (NR_157804).4	TTS (NR_157804).4	2636	NR_160659	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
101394	chr17	67363251	67363550	+	0	NA	intron (NM_001316341, intron 1 of 12)	AluJr4|SINE|Alu	3177	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
198770	chr6	108801671	108801830	+	0	NA	Intergenic	L1ME4a|LINE|L1	-46666	NM_001286609	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
130973	chr2	87569571	87570130	+	0	NA	Intergenic	Intergenic	-59905	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
47231	chr12	961101	961330	+	0	NA	intron (NM_001297419, intron 1 of 11)	AluSx1|SINE|Alu	-11493	NR_123713	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
97767	chr17	44501671	44502250	+	0	NA	intron (NM_001304940, intron 1 of 9)	intron (NM_001304940, intron 1 of 9)	1446	NM_001002909	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
18282	chr1	161123101	161123500	+	0	NA	intron (NM_032998, intron 4 of 5)	intron (NM_032998, intron 4 of 5)	5182	NM_001185094	4817		NM_005600	ENSG00000158793	NIT1	-	nitrilase 1	protein-coding
74059	chr15	52557301	52557500	+	0	NA	intron (NM_006628, intron 1 of 2)	intron (NM_006628, intron 1 of 2)	11432	NM_001330309	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
238393	chrX	150410221	150410880	+	0	NA	intron (NM_001177465, intron 1 of 4)	intron (NM_001177465, intron 1 of 4)	-34904	NM_005491	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
223593	chr8	144296271	144296430	+	0	NA	intron (NM_005526, intron 1 of 12)	intron (NM_005526, intron 1 of 12)	4746	NM_005526	3297		NM_005526	ENSG00000185122	HSF1	HSTF1	heat shock transcription factor 1	protein-coding
109408	chr19	678571	679080	+	0	NA	intron (NM_005860, intron 2 of 4)	L2c|LINE|L2	2433	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
66841	chr14	64913871	64915830	+	0	NA	intron (NM_001204063, intron 1 of 3)	intron (NM_001204063, intron 1 of 3)	395	NM_001202558	100529261		NM_001202558	ENSG00000125954	CHURC1-FNTB	FNTB|FTase-beta	CHURC1-FNTB readthrough	protein-coding
23785	chr1	233441071	233441230	+	0	NA	Intergenic	Intergenic	113426	NM_032435	84451		NM_032435	ENSG00000143674	MAP3K21	MLK4|dJ862P8.3	mitogen-activated protein kinase kinase kinase 21	protein-coding
237958	chrX	132975371	132975530	+	0	NA	Intergenic	Intergenic	-14080	NM_001077188	90161		NM_147174	ENSG00000171004	HS6ST2	MRXSPM	heparan sulfate 6-O-sulfotransferase 2	protein-coding
14757	chr1	146015601	146016000	+	0	NA	Intergenic	AluY|SINE|Alu	5935	NM_213652	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
110921	chr19	2779021	2779600	+	0	NA	intron (NM_003021, intron 1 of 11)	intron (NM_003021, intron 1 of 11)	3963	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
99752	chr17	50949101	50949730	+	0	NA	Intergenic	Intergenic	-81437	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
78046	chr15	90065271	90065700	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	16722	NR_146321	109729181		NR_146321	ENSG00000259291	ZNF710-AS1	-	ZNF710 antisense RNA 1	ncRNA
31273	chr10	92290071	92291800	+	0	NA	promoter-TSS (NM_017824)	promoter-TSS (NM_017824)	143	NM_014912	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
92935	chr17	16911251	16911950	+	0	NA	Intergenic	Intergenic	21576	NR_147084	96597		NR_147084		TBC1D27P	TBC1D27	TBC1 domain family member 27, pseudogene	pseudo
84523	chr16	30519251	30519930	+	0	NA	intron (NM_002209, intron 29 of 30)	L2c|LINE|L2	6976	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
71315	chr14	105375551	105375930	+	0	NA	intron (NM_001243127, intron 8 of 23)	L1M4|LINE|L1	-22798	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
19020	chr1	169658671	169659130	+	0	NA	Intergenic	L1P3|LINE|L1	-28776	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
45693	chr11	119065171	119065850	+	0	NA	Intergenic	Intergenic	-2308	NR_165447	55823		NM_021729	ENSG00000160695	VPS11	END1|HLD12|HLD12; DYT32|PEP5|RNF108|hVPS11	VPS11 core subunit of CORVET and HOPS complexes	protein-coding
26941	chr10	26494121	26494380	+	0	NA	intron (NM_019043, intron 3 of 14)	intron (NM_019043, intron 3 of 14)	55909	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
91903	chr17	7298551	7298650	+	0	NA	Intergenic	AluY|SINE|Alu	-3961	NM_015982	51087		NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y-box binding protein 2	protein-coding
238142	chrX	136749421	136749680	+	0	NA	intron (NM_004840, intron 2 of 21)	intron (NM_004840, intron 2 of 21)	18265	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
4217	chr1	19463071	19464150	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	20685	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
6419	chr1	28064171	28064530	+	0	NA	intron (NR_104214, intron 1 of 16)	intron (NR_104214, intron 1 of 16)	24260	NM_001282560	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
69382	chr14	94034321	94034850	+	0	NA	intron (NM_023112, intron 1 of 5)	MIRb|SINE|MIR	8245	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
116235	chr19	17541151	17541800	+	0	NA	intron (NM_173544, intron 10 of 15)	L2b|LINE|L2	-14174	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
30788	chr10	84359251	84360000	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	31036	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
151504	chr21	46371651	46371950	+	0	NA	intron (NM_006031, intron 15 of 46)	intron (NM_006031, intron 15 of 46)	47133	NM_001315529	5116		NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
69518	chr14	96204701	96204900	+	0	NA	promoter-TSS (NM_000623)	promoter-TSS (NM_000623)	-39	NM_000623	624		NM_000623	ENSG00000168398	BDKRB2	B2R|BK-2|BK2|BKR2|BRB2	bradykinin receptor B2	protein-coding
31086	chr10	89224951	89225450	+	0	NA	exon (NM_001127605, exon 6 of 10)	exon (NM_001127605, exon 6 of 10)	-17883	NM_003956	9023		NM_003956	ENSG00000138135	CH25H	C25H	cholesterol 25-hydroxylase	protein-coding
82982	chr16	21981951	21982250	+	0	NA	intron (NM_003366, intron 13 of 13)	AluY|SINE|Alu	19016	NM_001370530	255762		NM_173806	ENSG00000155714	PDZD9	C16orf65	PDZ domain containing 9	protein-coding
108097	chr18	61942001	61942500	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	-49243	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
238099	chrX	136597521	136597780	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-41893	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
44407	chr11	103682201	103682800	+	0	NA	Intergenic	Intergenic	-167406	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
98700	chr17	47939121	47939700	+	0	NA	intron (NR_103857, intron 1 of 2)	AluSz|SINE|Alu	1994	NR_103857	100506325		NR_103856	ENSG00000234494	SP2-AS1	-	SP2 antisense RNA 1	ncRNA
142707	chr20	8292851	8293150	+	0	NA	intron (NM_015192, intron 2 of 31)	intron (NM_015192, intron 2 of 31)	44296	NR_046809	100874337		NR_046809	ENSG00000225479	PLCB1-IT1	-	PLCB1 intronic transcript 1	ncRNA
184389	chr5	98876921	98877180	+	0	NA	intron (NR_157078, intron 24 of 36)	AluJb|SINE|Alu	-51512	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
193977	chr6	31728951	31729800	+	0	NA	promoter-TSS (NM_001303007)	promoter-TSS (NM_001303007)	-76	NM_001303007	23564		NM_013974	ENSG00000213722	DDAH2	DDAH|DDAHII|G6a|HEL-S-277|NG30	DDAH family member 2, ADMA-independent	protein-coding
5563	chr1	25908551	25908850	+	0	NA	Intergenic	AluJo|SINE|Alu	-1823	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
121457	chr19	47044501	47045030	+	0	NA	intron (NM_002517, intron 11 of 11)	AluSx|SINE|Alu	3859	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
29756	chr10	72218551	72219480	+	0	NA	intron (NM_001366791, intron 1 of 3)	intron (NM_001366791, intron 1 of 3)	-1881	NM_001369099	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
175156	chr4	55551771	55552530	+	0	NA	Intergenic	LTR12|LTR|ERV1	-5241	NM_004898	9575		NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
30123	chr10	74021171	74021330	+	0	NA	intron (NM_014000, intron 1 of 21)	L2c|LINE|L2	23134	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
196919	chr6	52390201	52391200	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	28549	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
171073	chr3	195444651	195444750	+	0	NA	Intergenic	AluJb|SINE|Alu	-1680	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
24343	chr1	239735251	239735350	+	0	NA	intron (NM_001375983, intron 5 of 6)	intron (NM_001375983, intron 5 of 6)	-16181	NR_103776	100506915		NR_103776	ENSG00000233355	CHRM3-AS2	-	CHRM3 antisense RNA 2	ncRNA
208294	chr7	66072271	66072700	+	0	NA	Intergenic	Intergenic	-3334	NM_001024943	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
104872	chr17	81862701	81862930	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-2280	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
26778	chr10	22988771	22989200	+	0	NA	intron (NM_173081, intron 10 of 18)	intron (NM_173081, intron 10 of 18)	60932	NM_001282746	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
218410	chr8	47513671	47514630	+	0	NA	intron (NM_001352958, intron 10 of 21)	intron (NM_001352958, intron 10 of 21)	-139938	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
136766	chr2	181420851	181421150	+	0	NA	Intergenic	Intergenic	-35892	NM_001316312	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
179048	chr4	165286851	165287250	+	0	NA	intron (NM_001161522, intron 4 of 13)	L1MB2|LINE|L1	-7027	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
127041	chr2	37196201	37198030	+	0	NA	intron (NM_001322375, intron 1 of 4)	intron (NM_001322375, intron 1 of 4)	619	NR_136316	100505876		NM_001322373	ENSG00000218739	CEBPZOS	CEBPZ-AS1	CEBPZ opposite strand	protein-coding
63402	chr13	114074701	114075200	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	3005	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
131293	chr2	96106571	96106730	+	0	NA	Intergenic	AluJr|SINE|Alu	9921	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
138992	chr2	218315901	218316280	+	0	NA	intron (NM_015488, intron 2 of 9)	MLT1H|LTR|ERVL-MaLR	-7089	NM_022572	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
82791	chr16	21457821	21458150	+	0	NA	non-coding (NR_027155, exon 17 of 29)	non-coding (NR_027155, exon 17 of 29)	-23530	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
150706	chr21	43723171	43723330	+	0	NA	intron (NM_003681, intron 1 of 10)	AluSx|SINE|Alu	4121	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
75930	chr15	70196471	70197080	+	0	NA	Intergenic	Intergenic	-98858	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
134464	chr2	143225701	143226100	+	0	NA	intron (NM_018460, intron 4 of 13)	intron (NM_018460, intron 4 of 13)	96481	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
230372	chr9	128076071	128076430	+	0	NA	intron (NM_001006641, intron 1 of 9)	AluJb|SINE|Alu	8050	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
166332	chr3	112858201	112859030	+	0	NA	Intergenic	LTR60B|LTR|ERV1	-11759	NM_001370552	344807		NM_001008784	ENSG00000206531	CD200R1L	CD200R2|CD200RLa	CD200 receptor 1 like	protein-coding
92457	chr17	8478851	8479630	+	0	NA	intron (NM_005964, intron 38 of 40)	intron (NM_005964, intron 38 of 40)	43356	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
220649	chr8	101097921	101098180	+	0	NA	Intergenic	Intergenic	45996	NR_033962	441374		NR_033962	ENSG00000248599	SLEAR	-	STAT1 regulated ILF2 complex interacting lncRNA	ncRNA
211480	chr7	105118621	105119350	+	0	NA	intron (NM_001350746, intron 14 of 14)	intron (NM_001350746, intron 14 of 14)	104780	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
113843	chr19	10633401	10634250	+	0	NA	intron (NM_001363611, intron 10 of 22)	intron (NM_001363611, intron 10 of 22)	8272	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
51478	chr12	52073421	52074080	+	0	NA	exon (NM_021934, exon 3 of 4)	exon (NM_021934, exon 3 of 4)	3772	NM_001098673	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
180887	chr5	33973371	33973530	+	0	NA	intron (NM_016180, intron 2 of 6)	intron (NM_016180, intron 2 of 6)	11243	NM_001297417	51151		NM_016180	ENSG00000164175	SLC45A2	1A1|AIM1|MATP|OCA4|SHEP5	solute carrier family 45 member 2	protein-coding
30316	chr10	75401771	75401930	+	0	NA	promoter-TSS (NR_120651)	promoter-TSS (NR_120651)	44	NR_120651	84858		NM_032772	ENSG00000165655	ZNF503	NOLZ-1|NOLZ1|Nlz2	zinc finger protein 503	protein-coding
191946	chr6	15994871	15995030	+	0	NA	Intergenic	Intergenic	-134136	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
203415	chr7	262951	263200	+	0	NA	Intergenic	Intergenic	-27095	NM_001374838	116033993		NM_001374838	ENSG00000248767	FOXL3	-	forkhead box L3	protein-coding
96578	chr17	40488501	40488700	+	0	NA	exon (NM_032865, exon 3 of 13)	exon (NM_032865, exon 3 of 13)	13023	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
237870	chrX	130339421	130340500	+	0	NA	promoter-TSS (NM_001282195)	promoter-TSS (NM_001282195)	41	NR_104107	9016		NM_003951	ENSG00000102078	SLC25A14	BMCP1|UCP5	solute carrier family 25 member 14	protein-coding
4177	chr1	19422121	19422380	+	0	NA	intron (NM_001313932, intron 1 of 4)	MER20|DNA|hAT-Charlie	62045	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
13701	chr1	116759451	116760050	+	0	NA	intron (NM_001328609, intron 2 of 4)	intron (NM_001328609, intron 2 of 4)	5320	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
77021	chr15	78620821	78621280	+	0	NA	promoter-TSS (NM_000743)	promoter-TSS (NM_000743)	-54	NR_046313	1136		NM_000743	ENSG00000080644	CHRNA3	BAIPRCK|LNCR2|NACHRA3|PAOD2	cholinergic receptor nicotinic alpha 3 subunit	protein-coding
147550	chr20	59948521	59949440	+	0	NA	TTS (NM_022106)	TTS (NM_022106)	8591	NM_001190827	63939		NM_022106	ENSG00000196227	FAM217B	C20orf177|dJ551D2.5	family with sequence similarity 217 member B	protein-coding
141178	chr2	239282251	239282550	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-23062	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
237345	chrX	118535021	118535280	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	39241	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
136475	chr2	177214371	177215130	+	0	NA	intron (NR_138470, intron 1 of 11)	AluY|SINE|Alu	1956	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
56220	chr12	111635471	111635830	+	0	NA	Intergenic	MIRb|SINE|MIR	-35974	NR_132311	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
97949	chr17	45225401	45227580	+	0	NA	intron (NM_005892, intron 1 of 26)	intron (NM_005892, intron 1 of 26)	4605	NM_005892	752		NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin like 1	protein-coding
168697	chr3	150620121	150620630	+	0	NA	intron (NM_016275, intron 1 of 5)	intron (NM_016275, intron 1 of 5)	17054	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
19875	chr1	183580301	183580700	+	0	NA	intron (NM_001127651, intron 3 of 15)	intron (NM_001127651, intron 3 of 15)	9959	NM_000433	4688		NM_000433	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
149143	chr21	17789551	17790230	+	0	NA	3' UTR (NM_001100420, exon 5 of 5)	3' UTR (NM_001100420, exon 5 of 5)	2619	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
99556	chr17	50394701	50395130	+	0	NA	intron (NM_018509, intron 2 of 6)	intron (NM_018509, intron 2 of 6)	2608	NM_018509	55379		NM_018509	ENSG00000108829	LRRC59	PRO1855|p34	leucine rich repeat containing 59	protein-coding
54099	chr12	76084401	76086200	+	0	NA	promoter-TSS (NM_004537)	promoter-TSS (NM_004537)	-615	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
52385	chr12	55720671	55722280	+	0	NA	exon (NM_002905, exon 2 of 5)	exon (NM_002905, exon 2 of 5)	1082	NM_001199771	5959		NM_002905	ENSG00000135437	RDH5	9cRDH|HSD17B9|RDH1|SDR9C5	retinol dehydrogenase 5	protein-coding
219002	chr8	63173371	63174080	+	0	NA	intron (NM_001277815, intron 3 of 5)	intron (NM_001277815, intron 3 of 5)	4722	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
108373	chr18	68720951	68721050	+	0	NA	intron (NM_001093729, intron 2 of 9)	AluJr|SINE|Alu	5784	NM_001093729	79839		NM_024781	ENSG00000150636	CCDC102B	ACY1L|AN|C18orf14|HsT1731	coiled-coil domain containing 102B	protein-coding
226513	chr9	71858951	71859200	+	0	NA	Intergenic	Intergenic	52118	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
200993	chr6	139532171	139533080	+	0	NA	Intergenic	AluY|SINE|Alu	-58029	NR_033919	645434		NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA
203688	chr7	1026071	1026750	+	0	NA	non-coding (NR_134538, exon 2 of 2)	non-coding (NR_134538, exon 2 of 2)	1959	NR_156697	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
70085	chr14	100164851	100165430	+	0	NA	Intergenic	MER74A|LTR|ERVL	-5495	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
229710	chr9	124800601	124800800	+	0	NA	promoter-TSS (NM_001282715)	promoter-TSS (NM_001282715)	-174	NM_001282715	169611		NM_182487	ENSG00000185585	OLFML2A	PRO34319	olfactomedin like 2A	protein-coding
231374	chr9	130683451	130683550	+	0	NA	TTS (NM_021619)	TTS (NM_021619)	-10260	NM_001282709	23404		NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|SHRF|hRrp4p|p7	exosome component 2	protein-coding
194291	chr6	32685071	32686250	+	0	NA	Intergenic	Intergenic	-19003	NM_002123	3119		NM_002123	ENSG00000179344	HLA-DQB1	CELIAC1|HLA-DQB|IDDM1	major histocompatibility complex, class II, DQ beta 1	protein-coding
36697	chr11	8699851	8700200	+	0	NA	intron (NR_164822, intron 16 of 22)	intron (NR_164822, intron 16 of 22)	14586	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
82266	chr16	15145871	15146030	+	0	NA	Intergenic	Intergenic	-8991	NR_123721	105369154		NR_123721	ENSG00000270580	PKD1P6-NPIPP1	-	PKD1P6-NPIPP1 readthrough	pseudo
184555	chr5	102761971	102762400	+	0	NA	intron (NM_001364588, intron 1 of 24)	intron (NM_001364588, intron 1 of 24)	6880	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
157551	chr22	45645571	45646230	+	0	NA	Intergenic	CpG	-25898	NM_001167621	25814		NM_013236	ENSG00000130638	ATXN10	ATX10|E46L|HUMEEP|SCA10	ataxin 10	protein-coding
78754	chr15	99014821	99015700	+	0	NA	intron (NR_126487, intron 1 of 3)	CpG	556	NR_126487	104564224		NR_126487		LUNAR1	-	leukemia-associated non-coding IGF1R activator RNA 1	ncRNA
223020	chr8	143296171	143296630	+	0	NA	exon (NM_030895, exon 3 of 3)	exon (NM_030895, exon 3 of 3)	4983	NM_030895	79943		NM_030895	ENSG00000185730	ZNF696	-	zinc finger protein 696	protein-coding
161799	chr3	45321951	45322250	+	0	NA	Intergenic	Intergenic	-66476	NM_001368263	23395		NM_015340	ENSG00000011376	LARS2	HLASA|LEURS|PRLTS4|mtLeuRS	leucyl-tRNA synthetase 2, mitochondrial	protein-coding
20211	chr1	193128101	193128500	+	0	NA	intron (NM_024529, intron 2 of 16)	AluJb|SINE|Alu	6269	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
139028	chr2	218404221	218404650	+	0	NA	3' UTR (NM_001206878, exon 7 of 7)	3' UTR (NM_001206878, exon 7 of 7)	1789	NR_029500	407017		NR_029500	ENSG00000199121	MIR26B	MIRN26B|hsa-mir-26b|miR-26b	microRNA 26b	ncRNA
67404	chr14	69796621	69797180	+	0	NA	exon (NM_003049, exon 1 of 5)	exon (NM_003049, exon 1 of 5)	341	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
16527	chr1	154941371	154941830	+	0	NA	intron (NM_001323012, intron 1 of 4)	intron (NM_001323012, intron 1 of 4)	1058	NM_001323012	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
201540	chr6	149171071	149171500	+	0	NA	Intergenic	Intergenic	-46639	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
119909	chr19	41597071	41597900	+	0	NA	Intergenic	L1MC4a|LINE|L1	21319	NM_001098506	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
35472	chr11	1485671	1486300	+	0	NA	intron (NM_001172223, intron 1 of 4)	intron (NM_001172223, intron 1 of 4)	794	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
111041	chr19	3095851	3096630	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	1878	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
29552	chr10	71322951	71323650	+	0	NA	intron (NR_033414, intron 2 of 3)	MLT1J|LTR|ERVL-MaLR	4041	NM_018344	55315		NM_018344	ENSG00000198246	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 member 3	protein-coding
117457	chr19	19686701	19687200	+	0	NA	Intergenic	AluSz6|SINE|Alu	18111	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
133718	chr2	127376021	127376280	+	0	NA	intron (NM_001371911, intron 1 of 16)	LTR22C0|LTR|ERVK	11825	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
236251	chrX	65748601	65749000	+	0	NA	Intergenic	CR1_Mam|LINE|CR1	81146	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
189840	chr5	177097151	177097980	+	0	NA	exon (NM_002011, exon 18 of 18)	exon (NM_002011, exon 18 of 18)	8015	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
136562	chr2	177604471	177604700	+	0	NA	Intergenic	Intergenic	14157	NM_152275	92104		NM_152275	ENSG00000197557	IFT70A	CFAP259|FAP259|TTC30A|TTC30B	intraflagellar transport 70A	protein-coding
193124	chr6	28985371	28985530	+	0	NA	promoter-TSS (NR_145490)	promoter-TSS (NR_145490)	-398	NR_145490	414761		NR_135289		HCG15	HCG16	HLA complex group 15	ncRNA
100143	chr17	58517171	58519200	+	0	NA	promoter-TSS (NM_001378066)	promoter-TSS (NM_001378066)	-305	NM_001378066	9110		NM_004687	ENSG00000108389	MTMR4	FYVE-DSP2|ZFYVE11	myotubularin related protein 4	protein-coding
206778	chr7	36722371	36722750	+	0	NA	intron (NM_001177506, intron 1 of 21)	intron (NM_001177506, intron 1 of 21)	1934	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
50999	chr12	49648271	49648830	+	0	NA	intron (NM_175736, intron 21 of 25)	intron (NM_175736, intron 21 of 25)	24989	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
189375	chr5	172701301	172702050	+	0	NA	Intergenic	Intergenic	39510	NR_049799	100847029		NR_049799	ENSG00000265160	MIR5003	-	microRNA 5003	ncRNA
171397	chr3	196190171	196190530	+	0	NA	Intergenic	Intergenic	21050	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
81898	chr16	11718001	11718400	+	0	NA	intron (NM_001303447, intron 5 of 12)	intron (NM_001303447, intron 5 of 12)	24657	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
126885	chr2	32276201	32276400	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-1604	NM_032312	84272		NM_032312	ENSG00000119820	YIPF4	FinGER4|Nbla11189|YIPFalpha2	Yip1 domain family member 4	protein-coding
187939	chr5	149037751	149038080	+	0	NA	intron (NM_024577, intron 8 of 16)	intron (NM_024577, intron 8 of 16)	24494	NR_030310	693169		NR_030310	ENSG00000207714	MIR584	MIRN584|hsa-mir-584	microRNA 584	ncRNA
158256	chr22	50312371	50312730	+	0	NA	exon (NM_001001794, exon 18 of 20)	exon (NM_001001794, exon 18 of 20)	-4904	NM_001376869	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
195884	chr6	41683321	41684830	+	0	NA	TTS (NM_007162)	TTS (NM_007162)	45607	NM_005586	4188		NM_005586	ENSG00000112559	MDFI	I-MF|I-mfa	MyoD family inhibitor	protein-coding
222308	chr8	133489421	133490100	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	82127	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
150502	chr21	42832721	42833090	+	0	NA	Intergenic	Intergenic	46370	NM_001260477	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
192413	chr6	24856921	24857500	+	0	NA	intron (NM_001286447, intron 8 of 13)	intron (NM_001286447, intron 8 of 13)	20060	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
28500	chr10	50074871	50075650	+	0	NA	intron (NM_001291398, intron 3 of 29)	intron (NM_001291398, intron 3 of 29)	7306	NM_001005751	387680		NM_018232	ENSG00000099290	WASHC2A	FAM21A|FAM21B|bA56A21.1|bA98I6.1	WASH complex subunit 2A	protein-coding
227480	chr9	91159871	91160280	+	0	NA	intron (NR_135306, intron 2 of 2)	CpG	41013	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
74985	chr15	63896601	63897900	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-26231	NR_029944	494334		NR_029944	ENSG00000199156	MIR422A	MIRN422A	microRNA 422a	ncRNA
79639	chr16	1159421	1159800	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	6369	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
119659	chr19	40826271	40827650	+	0	NA	Intergenic	Intergenic	-15860	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
229567	chr9	123265651	123266180	+	0	NA	intron (NM_018387, intron 1 of 18)	intron (NM_018387, intron 1 of 18)	2671	NR_033234	55342		NM_018387	ENSG00000165209	STRBP	HEL162|ILF3L|SPNR|p74	spermatid perinuclear RNA binding protein	protein-coding
81191	chr16	4481471	4482230	+	0	NA	intron (NM_001286268, intron 1 of 5).2	intron (NM_001286268, intron 1 of 5).2	5452	NM_002134	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
85199	chr16	46973201	46975230	+	0	NA	promoter-TSS (NM_005880)	promoter-TSS (NM_005880)	-541	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
29044	chr10	67765101	67766150	+	0	NA	Intergenic	L1ME4a|LINE|L1	-69430	NM_013266	29119		NM_013266	ENSG00000183230	CTNNA3	ARVD13|VR22	catenin alpha 3	protein-coding
173871	chr4	24475901	24476400	+	0	NA	Intergenic	Intergenic	-3245	NM_001330752	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
2313	chr1	9093901	9094100	+	0	NA	Intergenic	HERVFH19-int|LTR|ERV1	-21741	NM_001328619	6518		NM_003039	ENSG00000142583	SLC2A5	GLUT-5|GLUT5	solute carrier family 2 member 5	protein-coding
191690	chr6	13611771	13612130	+	0	NA	non-coding (NR_164853, exon 7 of 7)	non-coding (NR_164853, exon 7 of 7)	-3377	NM_001317724	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
5133	chr1	24892971	24893800	+	0	NA	Intergenic	L2a|LINE|L2	26031	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
209248	chr7	75882021	75882630	+	0	NA	intron (NM_001346186, intron 4 of 5)	intron (NM_001346186, intron 4 of 5)	3291	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
83532	chr16	27547451	27547750	+	0	NA	intron (NM_001520, intron 1 of 36)	intron (NM_001520, intron 1 of 36)	2313	NM_001520	2975		NM_001520	ENSG00000077235	GTF3C1	TFIIIC|TFIIIC220|TFIIICalpha	general transcription factor IIIC subunit 1	protein-coding
180702	chr5	21495671	21496730	+	0	NA	intron (NR_027028, intron 5 of 5).2	AluSx|SINE|Alu	36720	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
178094	chr4	140353701	140354100	+	0	NA	intron (NM_001153690, intron 1 of 2)	intron (NM_001153690, intron 1 of 2)	10439	NM_001153585	60592		NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding
193999	chr6	31779621	31780330	+	0	NA	intron (NM_006295, intron 26 of 29).4	intron (NM_006295, intron 26 of 29).4	-2647	NM_025258	80737		NM_025258	ENSG00000204396	VWA7	C6orf27|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding
212674	chr7	129611001	129613630	+	0	NA	intron (NM_005011, intron 1 of 10)	CpG	595	NM_001293164	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
201273	chr6	144218201	144218700	+	0	NA	Intergenic	Intergenic	67933	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
115662	chr19	16136621	16137350	+	0	NA	intron (NR_163150, intron 1 of 7)	LTR9A1|LTR|ERV1	2957	NR_111903	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
38234	chr11	36459271	36459430	+	0	NA	intron (NM_001160167, intron 8 of 8)	intron (NM_001160167, intron 8 of 8)	50922	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
39168	chr11	57347171	57347730	+	0	NA	exon (NM_002559, exon 4 of 12)	exon (NM_002559, exon 4 of 12)	9098	NM_002559	5024		NM_002559	ENSG00000109991	P2RX3	P2X3	purinergic receptor P2X 3	protein-coding
121622	chr19	47431421	47432130	+	0	NA	intron (NM_015063, intron 9 of 9)	intron (NM_015063, intron 9 of 9)	-9542	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
39400	chr11	60767321	60767580	+	0	NA	intron (NM_001278242, intron 2 of 5)	CpG	10583	NM_001278242	219995		NM_152717	ENSG00000166961	MS4A15	-	membrane spanning 4-domains A15	protein-coding
234892	chrX	30735801	30736080	+	0	NA	Intergenic	Intergenic	82517	NM_000167	2710		NM_000167	ENSG00000198814	GK	GK1|GKD	glycerol kinase	protein-coding
138274	chr2	203623571	203623930	+	0	NA	Intergenic	L2b|LINE|L2	-82725	NM_001243078	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
38452	chr11	45356271	45356430	+	0	NA	non-coding (NR_120557, exon 2 of 2)	non-coding (NR_120557, exon 2 of 2)	979	NR_120558	101928812		NR_120557	ENSG00000254427	LINC02696	-	long intergenic non-protein coding RNA 2696	ncRNA
59836	chr13	30456601	30456800	+	0	NA	TTS (NM_002128)	TTS (NM_002128)	7627	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
54127	chr12	76517701	76517900	+	0	NA	intron (NM_001003712, intron 1 of 22)	MSTB|LTR|ERVL-MaLR	41971	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
93585	chr17	19117321	19118100	+	0	NA	Intergenic	AluY|SINE|Alu	-5074	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
100392	chr17	60161921	60162450	+	0	NA	intron (NR_137422, intron 8 of 11)	intron (NR_137422, intron 8 of 11)	12212	NM_000717	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
40208	chr11	63490001	63490200	+	0	NA	intron (NM_054108, intron 2 of 5)	intron (NM_054108, intron 2 of 5)	1067	NM_054108	117245		NM_054108	ENSG00000168004	PLAAT5	HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT	phospholipase A and acyltransferase 5	protein-coding
92610	chr17	9987801	9988230	+	0	NA	intron (NM_201432, intron 2 of 13)	intron (NM_201432, intron 2 of 13)	-28520	NM_003644	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
129633	chr2	70133561	70134600	+	0	NA	Intergenic	Intergenic	-8764	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
8915	chr1	43981921	43982380	+	0	NA	intron (NM_003780, intron 3 of 6)	intron (NM_003780, intron 3 of 6)	1645	NM_001005417	8704		NM_003780	ENSG00000117411	B4GALT2	B4Gal-T2|B4Gal-T3|beta4Gal-T2	beta-1,4-galactosyltransferase 2	protein-coding
222971	chr8	143204571	143204750	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-8558	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
208972	chr7	74199471	74199630	+	0	NA	Intergenic	Intergenic	8352	NR_030321	693175		NR_030321	ENSG00000207741	MIR590	MIRN590|hsa-mir-590|mir-590	microRNA 590	ncRNA
34804	chr11	271351	271530	+	0	NA	Intergenic	Intergenic	-6967	NM_001276700	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
27567	chr10	32358421	32358950	+	0	NA	intron (NR_104163, intron 1 of 1)	intron (NR_104163, intron 1 of 1)	11321	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
17330	chr1	156474921	156475380	+	0	NA	exon (NM_005920, exon 9 of 12)	exon (NM_005920, exon 9 of 12)	15537	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
39861	chr11	62401851	62403100	+	0	NA	Intergenic	Intergenic	-16558	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
162108	chr3	46911321	46911580	+	0	NA	Intergenic	L1MD2|LINE|L1	29201	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
156843	chr22	41957681	41959080	+	0	NA	non-coding (NR_024355, exon 2 of 2)	non-coding (NR_024355, exon 2 of 2)	6193	NR_024355								
86753	chr16	67652471	67653500	+	0	NA	intron (NM_001317026, intron 29 of 37)	CpG	7275	NM_001082486	65057		NM_022914	ENSG00000102977	ACD	PIP1|PTOP|TINT1|TPP1	ACD shelterin complex subunit and telomerase recruitment factor	protein-coding
154755	chr22	36508071	36508600	+	0	NA	Intergenic	Intergenic	-1295	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
85027	chr16	31703451	31703550	+	0	NA	intron (NR_024034, intron 4 of 8)	intron (NR_024034, intron 4 of 8)	2887	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
232721	chr9	136603971	136604130	+	0	NA	Intergenic	Intergenic	13131	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
75615	chr15	67126321	67126580	+	0	NA	intron (NM_001145102, intron 1 of 8)	intron (NM_001145102, intron 1 of 8)	734	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
142882	chr20	17874071	17874230	+	0	NA	Intergenic	Intergenic	88796	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
43451	chr11	77886531	77886650	+	0	NA	intron (NR_133637, intron 4 of 4)	LSU-rRNA_Hsa|rRNA|rRNA	45452	NM_001363564	28971		NM_024684	ENSG00000087884	AAMDC	C11orf67|CK067|PTD015	adipogenesis associated Mth938 domain containing	protein-coding
1382	chr1	2533751	2534050	+	0	NA	Intergenic	L1MB4|LINE|L1	-3637	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
163746	chr3	52355571	52356030	+	0	NA	intron (NM_015512, intron 21 of 77)	L2b|LINE|L2	39481	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
186141	chr5	134161771	134162680	+	0	NA	intron (NM_170679, intron 3 of 5)	AluJb|SINE|Alu	14725	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
55467	chr12	104682421	104683530	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	91342	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
212773	chr7	129989371	129989780	+	0	NA	Intergenic	Intergenic	-36615	NM_001202498	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
183065	chr5	73519471	73520050	+	0	NA	Intergenic	Intergenic	21335	NM_001207	689		NM_001207	ENSG00000145741	BTF3	BETA-NAC|BTF3a|BTF3b|NACB	basic transcription factor 3	protein-coding
41393	chr11	66009671	66009830	+	0	NA	Intergenic	AluJb|SINE|Alu	-2258	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
2126	chr1	8314221	8315100	+	0	NA	Intergenic	Intergenic	-3454	NM_001379614	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
75774	chr15	68781771	68782330	+	0	NA	intron (NM_006305, intron 5 of 6)	intron (NM_006305, intron 5 of 6)	19875	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
187751	chr5	143968071	143968230	+	0	NA	Intergenic	Intergenic	155989	NM_021182	57824		NM_021182	ENSG00000158497	HMHB1	HB-1|HB-1Y|HLA-HB1	histocompatibility minor HB-1	protein-coding
153235	chr22	23975901	23976500	+	0	NA	intron (NM_001355, intron 1 of 3).2	intron (NM_001355, intron 1 of 3).2	-1759	NM_001381852	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
33380	chr10	117496571	117496880	+	0	NA	intron (NR_002791, intron 2 of 3)	intron (NR_002791, intron 2 of 3)	-45720	NM_001165924	2018		NM_004098	ENSG00000170370	EMX2	-	empty spiracles homeobox 2	protein-coding
149392	chr21	31142621	31142880	+	0	NA	intron (NM_001353694, intron 20 of 27)	intron (NM_001353694, intron 20 of 27)	18190	NM_001353684	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
196852	chr6	47506051	47506350	+	0	NA	intron (NM_012120, intron 2 of 17)	SVA_C|Retroposon|SVA	28411	NM_012120	23607		NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
105981	chr18	5630501	5630800	+	0	NA	promoter-TSS (NM_001384706)	promoter-TSS (NM_001384706)	13	NM_001384700	23136		NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1 like 3	protein-coding
18966	chr1	168580171	168580330	+	0	NA	intron (NM_002995, intron 2 of 2)	intron (NM_002995, intron 2 of 2)	3645	NM_002995	6375		NM_002995	ENSG00000143184	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	X-C motif chemokine ligand 1	protein-coding
129734	chr2	70946651	70947330	+	0	NA	intron (NM_001692, intron 2 of 13)	(CCTCTC)n|Simple_repeat|Simple_repeat	1621	NR_110274	101927750		NR_110273	ENSG00000239322	ATP6V1B1-AS1	-	ATP6V1B1 antisense RNA 1	ncRNA
9431	chr1	48471601	48472490	+	0	NA	5' UTR (NM_019073, exon 1 of 13)	5' UTR (NM_019073, exon 1 of 13)	159	NM_001286238	54558		NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
60440	chr13	41004071	41004250	+	0	NA	intron (NM_001370329, intron 1 of 9)	L2c|LINE|L2	15156	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
108079	chr18	59923321	59923580	+	0	NA	Intergenic	Intergenic	23454	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
238077	chrX	136162751	136163080	+	0	NA	intron (NM_001159700, intron 1 of 6)	MLT1A1|LTR|ERVL-MaLR	-6381	NM_001159704	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
63900	chr14	21875001	21875400	+	0	NA	Intergenic	Intergenic	-204183	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
75254	chr15	64905051	64905850	+	0	NA	Intergenic	Intergenic	-6452	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
155996	chr22	39925501	39925700	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	-1004	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
182551	chr5	65779621	65779950	+	0	NA	intron (NM_020726, intron 4 of 12)	intron (NM_020726, intron 4 of 12)	57580	NM_020726	57486		NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
115916	chr19	16612071	16612680	+	0	NA	intron (NM_004831, intron 1 of 2)	AluJr|SINE|Alu	15829	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
192295	chr6	20693021	20693280	+	0	NA	intron (NM_017774, intron 5 of 15)	AluY|SINE|Alu	158693	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
217573	chr8	29466651	29466950	+	0	NA	Intergenic	Intergenic	-116116	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
49291	chr12	20551451	20551550	+	0	NA	intron (NM_001378408, intron 2 of 17)	SSU-rRNA_Hsa|rRNA|rRNA	-20579	NM_001244683	5139		NM_000921	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB	phosphodiesterase 3A	protein-coding
88832	chr16	87487451	87488080	+	0	NA	intron (NM_015144, intron 1 of 12)	L1MB7|LINE|L1	5259	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
237521	chrX	120244471	120245350	+	0	NA	non-coding (NR_027131, exon 1 of 3)	non-coding (NR_027131, exon 1 of 3)	357	NR_027131	158801		NM_173522	ENSG00000293328	NKAPP1	CXorf42	NFKB activating protein pseudogene 1	pseudo
185274	chr5	125611551	125611650	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	118339	NR_109887	101927460		NR_109887	ENSG00000260192	LINC02240	-	long intergenic non-protein coding RNA 2240	ncRNA
39679	chr11	61700651	61700950	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	20409	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
110558	chr19	2110371	2110530	+	0	NA	intron (NM_001374799, intron 27 of 31)	intron (NM_001374799, intron 27 of 31)	13535	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
72929	chr15	40408371	40408730	+	0	NA	intron (NR_148925, intron 3 of 13)	intron (NR_148925, intron 3 of 13)	2755	NM_001159508	3712		NM_002225	ENSG00000128928	IVD	ACAD2|IVDH	isovaleryl-CoA dehydrogenase	protein-coding
3869	chr1	16977601	16978400	+	0	NA	intron (NM_017459, intron 2 of 8)	intron (NM_017459, intron 2 of 8)	2620	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
26035	chr10	12355571	12355730	+	0	NA	intron (NM_153498, intron 1 of 10)	intron (NM_153498, intron 1 of 10)	6103	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
179067	chr4	166039951	166040050	+	0	NA	intron (NM_012464, intron 10 of 20)	intron (NM_012464, intron 10 of 20)	166763	NM_012464	7092		NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding
98885	chr17	48566021	48566480	+	0	NA	intron (NM_001384750, intron 1 of 3)	intron (NM_001384750, intron 1 of 3)	8198	NM_002146	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
43110	chr11	75140551	75141230	+	0	NA	Intergenic	MIRc|SINE|MIR	-10217	NM_001145212	11309		NM_007256	ENSG00000137491	SLCO2B1	OATP-B|OATP2B1|OATPB|SLC21A9	solute carrier organic anion transporter family member 2B1	protein-coding
84202	chr16	29865171	29865330	+	0	NA	intron (NR_015396, intron 4 of 5)	intron (NR_015396, intron 4 of 5)	1416	NR_015396	440356		NR_015396	ENSG00000293487	CDIPTOSP	CDIPT-AS1|lnc-CTHCC	CDIP transferase opposite strand, pseudogene	ncRNA
143166	chr20	24108971	24109800	+	0	NA	Intergenic	Intergenic	-90382	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
178406	chr4	147689101	147689300	+	0	NA	Intergenic	Intergenic	-4970	NM_001350142	90826		NM_138364	ENSG00000164169	PRMT9	PRMT10	protein arginine methyltransferase 9	protein-coding
75432	chr15	65793601	65793800	+	0	NA	Intergenic	Intergenic	-1407	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
92041	chr17	7493851	7494030	+	0	NA	intron (NM_000937, intron 1 of 29)	AluYa8|SINE|Alu	9574	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
238226	chrX	140712751	140713350	+	0	NA	TTS (NR_028345)	TTS (NR_028345)	3291	NR_104228	286411		NR_028344	ENSG00000203930	LINC00632	ARST|ASINC|BMOR|CDR1-AS|CDR1NAT|CDR1as|MDHDH|ciRS-7	long intergenic non-protein coding RNA 632	ncRNA
77391	chr15	83061221	83061880	+	0	NA	intron (NM_025238, intron 1 of 7)	MLT1H2|LTR|ERVL-MaLR	5702	NM_001011885	53339		NM_025238	ENSG00000064726	BTBD1	C15orf1|NS5ATP8	BTB domain containing 1	protein-coding
1852	chr1	6351821	6352280	+	0	NA	intron (NM_007274, intron 1 of 8)	intron (NM_007274, intron 1 of 8)	6879	NM_181866	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
145641	chr20	44888421	44889550	+	0	NA	intron (NM_003404, intron 2 of 6)	intron (NM_003404, intron 2 of 6)	3280	NM_003404	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
86086	chr16	57634101	57634500	+	0	NA	intron (NM_001145772, intron 1 of 14)	intron (NM_001145772, intron 1 of 14)	-5192	NM_001145774	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
195011	chr6	35419171	35419930	+	0	NA	intron (NM_001171820, intron 3 of 5)	intron (NM_001171820, intron 3 of 5)	-32788	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
146220	chr20	48794271	48794880	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	33424	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
118844	chr19	38634371	38635130	+	0	NA	intron (NM_013234, intron 6 of 7).2	intron (NM_013234, intron 6 of 7).2	-12899	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
112626	chr19	6770521	6770780	+	0	NA	Intergenic	AluJr|SINE|Alu	-2058	NM_001258207	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
152939	chr22	22820501	22821550	+	0	NA	Intergenic	Intergenic	-1751	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
54329	chr12	89649071	89649430	+	0	NA	intron (NM_001366523, intron 2 of 21)	MSTB-int|LTR|ERVL-MaLR	59588	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
165207	chr3	72845851	72846150	+	0	NA	intron (NM_018130, intron 1 of 10)	MIR|SINE|MIR	2445	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
212120	chr7	116224501	116225180	+	0	NA	intron (NM_152829, intron 1 of 6)	intron (NM_152829, intron 1 of 6)	1887	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
49562	chr12	26863601	26863800	+	0	NA	Intergenic	Intergenic	-30506	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
203293	chr6	169950651	169950930	+	0	NA	Intergenic	Intergenic	-11833	NR_027434	100131532		NR_027434		LOC100131532	-	uncharacterized LOC100131532	ncRNA
86273	chr16	58506901	58507100	+	0	NA	exon (NM_020465, exon 10 of 16)	exon (NM_020465, exon 10 of 16)	6857	NM_001378344	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
87476	chr16	71736071	71736830	+	0	NA	intron (NM_001128, intron 21 of 22)	AluYh3|SINE|Alu	-11749	NM_015020	23035		NM_015020	ENSG00000040199	PHLPP2	PHLPPL|PPM3B	PH domain and leucine rich repeat protein phosphatase 2	protein-coding
173520	chr4	9701851	9702150	+	0	NA	Intergenic	AluJr|SINE|Alu	-79634	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
66724	chr14	64457651	64458100	+	0	NA	intron (NM_001364837, intron 26 of 26)	intron (NM_001364837, intron 26 of 26)	-7624	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
82480	chr16	17336701	17337100	+	0	NA	intron (NM_022166, intron 2 of 11)	intron (NM_022166, intron 2 of 11)	134060	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
57659	chr12	122659751	122660050	+	0	NA	Intergenic	Intergenic	36099	NR_162150	113218511		NR_162150		MIR9902-2	-	microRNA 9902-2	ncRNA
156221	chr22	40340701	40340900	+	0	NA	Intergenic	AluJb|SINE|Alu	-5700	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
89594	chr16	89281251	89281800	+	0	NA	exon (NM_001256183, exon 9 of 13)	exon (NM_001256183, exon 9 of 13)	-14603	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
155640	chr22	38957271	38957830	+	0	NA	promoter-TSS (NM_001270406)	promoter-TSS (NM_001270406)	28	NM_001193289	100913187		NM_001193289		APOBEC3A_B	A3A|APOBEC3A	APOBEC3A and APOBEC3B deletion hybrid	protein-coding
191979	chr6	16157121	16157380	+	0	NA	Intergenic	Intergenic	15694	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
176013	chr4	82281901	82282100	+	0	NA	Intergenic	AluSz|SINE|Alu	91991	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
123459	chr19	54152151	54152250	+	0	NA	intron (NM_014516, intron 13 of 17).8	intron (NM_014516, intron 13 of 17).8	7521	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
224975	chr9	33081051	33081630	+	0	NA	Intergenic	Intergenic	-4666	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
61489	chr13	52497851	52498430	+	0	NA	intron (NR_002793, intron 3 of 23)	L1MA4A|LINE|L1	9147	NR_002793	220115		NR_002793		TPTE2P3	TPTEps1	TPTE2 pseudogene 3	pseudo
108046	chr18	59267771	59268430	+	0	NA	3' UTR (NM_013435, exon 3 of 3)	3' UTR (NM_013435, exon 3 of 3)	5354	NM_013435	30062		NM_013435	ENSG00000134438	RAX	MCOP3|MCOPS16|RAX1|RX	retina and anterior neural fold homeobox	protein-coding
65481	chr14	51866071	51866780	+	0	NA	intron (NM_001243774, intron 1 of 2)	intron (NM_001243774, intron 1 of 2)	5813	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
85397	chr16	50302001	50302450	+	0	NA	intron (NM_001114, intron 10 of 25)	intron (NM_001114, intron 10 of 25)	9609	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
24384	chr1	241770021	241770280	+	0	NA	intron (NM_001367482, intron 17 of 27)	intron (NM_001367482, intron 17 of 27)	-78041	NM_001319224	9156		NM_003686	ENSG00000174371	EXO1	HEX1|hExoI	exonuclease 1	protein-coding
193670	chr6	30966221	30966480	+	0	NA	Intergenic	Intergenic	-11488	NR_138040	102723346		NR_138040		HCG21	NCRNA00150	HLA complex group 21	ncRNA
171891	chr4	789571	790330	+	0	NA	intron (NM_006651, intron 3 of 3)	intron (NM_006651, intron 3 of 3)	-8102	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
150935	chr21	44285471	44286480	+	0	NA	promoter-TSS (NM_000383)	promoter-TSS (NM_000383)	99	NM_000383	326		NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
141062	chr2	238258821	238259080	+	0	NA	intron (NM_022817, intron 14 of 22)	intron (NM_022817, intron 14 of 22)	-18912	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
41023	chr11	65439421	65440050	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	-4723	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
176319	chr4	87559271	87559780	+	0	NA	Intergenic	Intergenic	-30022	NM_004684	8404		NM_004684	ENSG00000152583	SPARCL1	MAST 9|MAST9|PIG33|SC1	SPARC like 1	protein-coding
35734	chr11	2077171	2077530	+	0	NA	Intergenic	L1ME2|LINE|L1	56859	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
173377	chr4	7936421	7936680	+	0	NA	intron (NM_001371091, intron 1 of 17)	intron (NM_001371091, intron 1 of 17)	-2451	NM_203423	389199		NM_203423	ENSG00000228919	LOC389199	-	uncharacterized LOC389199	ncRNA
121400	chr19	46953851	46954150	+	0	NA	intron (NM_004491, intron 3 of 6)	intron (NM_004491, intron 3 of 6)	-65837	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
104428	chr17	81073551	81073850	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	-9289	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
163779	chr3	52386801	52387000	+	0	NA	intron (NM_015512, intron 56 of 77)	intron (NM_015512, intron 56 of 77)	23108	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
169664	chr3	171561851	171562150	+	0	NA	Intergenic	Intergenic	-101592	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
77856	chr15	88834251	88834600	+	0	NA	intron (NM_013227, intron 1 of 17)	intron (NM_013227, intron 1 of 17)	30982	NM_013227	176		NM_001135	ENSG00000157766	ACAN	AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD	aggrecan	protein-coding
166717	chr3	121483471	121483630	+	0	NA	exon (NM_199420, exon 18 of 30)	exon (NM_199420, exon 18 of 30)	62438	NM_199420	10721		NM_006596	ENSG00000051341	POLQ	PRO0327	DNA polymerase theta	protein-coding
113433	chr19	9806471	9806630	+	0	NA	Intergenic	AluJr|SINE|Alu	12529	NM_001316938	54850		NM_017703	ENSG00000127452	FBXL12	Fbl12	F-box and leucine rich repeat protein 12	protein-coding
47557	chr12	4295201	4296030	+	0	NA	intron (NM_001759, intron 4 of 4)	AluSx|SINE|Alu	-19431	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
10478	chr1	66348971	66349430	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	-5335	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
190299	chr5	179597651	179598180	+	0	NA	intron (NR_110560, intron 7 of 8).2	AluSx3|SINE|Alu	5826	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
32153	chr10	101351071	101351230	+	0	NA	Intergenic	AluSx|SINE|Alu	-2883	NM_001256856	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
23461	chr1	228555051	228555150	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-42812	NM_001287262	100129094		NM_001287262		BTNL10P	BTN4|BTNL10|BUTR1	butyrophilin like 10, pseudogene	pseudo
166689	chr3	120450421	120451080	+	0	NA	intron (NM_007085, intron 1 of 10)	CpG-20143	242	NM_007085	11167		NM_007085	ENSG00000163430	FSTL1	FRP|FSL1|MIR198|OCC-1|OCC1|tsc36	follistatin like 1	protein-coding
15586	chr1	150577641	150580630	+	0	NA	exon (NM_182763, exon 1 of 2)	exon (NM_182763, exon 1 of 2)	475	NM_021960	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
155968	chr22	39896451	39897300	+	0	NA	Intergenic	Intergenic	-3115	NM_152512	150350		NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
4125	chr1	19326251	19326350	+	0	NA	exon (NM_001287531, exon 5 of 8)	exon (NM_001287531, exon 5 of 8)	13974	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
142750	chr20	10446871	10447430	+	0	NA	intron (NM_001009608, intron 1 of 7)	L1MD2|LINE|L1	11845	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
217240	chr8	26690721	26691280	+	0	NA	Intergenic	Intergenic	112595	NM_001244604	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
228594	chr9	104984671	104985030	+	0	NA	Intergenic	Intergenic	-56695	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
233394	chr9	137551001	137552500	+	0	NA	promoter-TSS (NM_032477)	promoter-TSS (NM_032477)	-129	NM_032477	64975		NM_032477	ENSG00000182154	MRPL41	BMRP|MRP-L27|MRPL27|PIG3|RPML27|mL41	mitochondrial ribosomal protein L41	protein-coding
234725	chrX	21773101	21773330	+	0	NA	Intergenic	L1PB1|LINE|L1	-15099	NM_014332	23676		NM_014332	ENSG00000091482	SMPX	Chisel|Csl|DFN6|DFNX4|MPD7	small muscle protein X-linked	protein-coding
166560	chr3	115667251	115667830	+	0	NA	intron (NM_001130064, intron 2 of 3)	intron (NM_001130064, intron 2 of 3)	44030	NM_001130064	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
23800	chr1	234313551	234314200	+	0	NA	intron (NM_173508, intron 4 of 7)	intron (NM_173508, intron 4 of 7)	7408	NR_039818	100616380		NR_039818	ENSG00000264377	MIR4671	-	microRNA 4671	ncRNA
169763	chr3	172586371	172586730	+	0	NA	intron (NR_146714, intron 2 of 3)	intron (NR_146714, intron 2 of 3)	9057	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
218829	chr8	59141621	59142450	+	0	NA	Intergenic	LTR53|LTR|ERVL	22825	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
152751	chr22	21737871	21738500	+	0	NA	Intergenic	L1MB3|LINE|L1	-2391	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
78274	chr15	90870451	90870550	+	0	NA	promoter-TSS (NM_001382619)	promoter-TSS (NM_001382619)	-552	NM_001382619	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
131326	chr2	96133721	96133980	+	0	NA	intron (NM_001002036, intron 4 of 8)	intron (NM_001002036, intron 4 of 8)	4586	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
125131	chr2	9841371	9842150	+	0	NA	Intergenic	Intergenic	-1682	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
90427	chr17	1351151	1351650	+	0	NA	intron (NR_024058, intron 6 of 6)	intron (NR_024058, intron 6 of 6)	48822	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
40186	chr11	62909101	62909530	+	0	NA	3' UTR (NM_000738, exon 2 of 2)	3' UTR (NM_000738, exon 2 of 2)	12048	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
199583	chr6	119077351	119079480	+	0	NA	5' UTR (NM_024581, exon 1 of 18)	5' UTR (NM_024581, exon 1 of 18)	249	NM_024581	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
184632	chr5	107388551	107388650	+	0	NA	intron (NM_001962, intron 2 of 4)	intron (NM_001962, intron 2 of 4)	282337	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
143198	chr20	24945701	24946100	+	0	NA	Intergenic	L1PA7|LINE|L1	-3369	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
66212	chr14	61298201	61298400	+	0	NA	Intergenic	Intergenic	-16962	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
196780	chr6	45608101	45608500	+	0	NA	Intergenic	Intergenic	186025	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
12015	chr1	96719151	96719450	+	0	NA	Intergenic	MIR|SINE|MIR	-2305	NM_001300988	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
142578	chr20	5528471	5529300	+	0	NA	Intergenic	Intergenic	-18883	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
124794	chr2	7452171	7453000	+	0	NA	Intergenic	Intergenic	31324	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
7834	chr1	36317171	36317330	+	0	NA	intron (NM_024676, intron 7 of 12)	MIR|SINE|MIR	6395	NM_001304762	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
39886	chr11	62493201	62493400	+	0	NA	intron (NM_024060, intron 4 of 5)	AluSx|SINE|Alu	52364	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
232858	chr9	136795001	136795550	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-1063	NM_001039374	84960		NM_032874	ENSG00000213213	CCDC183	KIAA1984|PARF|bA216L13.7	coiled-coil domain containing 183	protein-coding
5782	chr1	26533771	26534400	+	0	NA	intron (NM_002953, intron 1 of 21)	intron (NM_002953, intron 1 of 21)	4324	NM_002953	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
175060	chr4	54005271	54005630	+	0	NA	Intergenic	Intergenic	-18168	NR_027153	402176		NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo
79519	chr16	804451	804550	+	0	NA	promoter-TSS (NM_001013638)	promoter-TSS (NM_001013638)	-943	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
137040	chr2	190862601	190863030	+	0	NA	Intergenic	Intergenic	-18006	NM_001256310	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
23295	chr1	228065051	228065350	+	0	NA	Intergenic	Intergenic	11350	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
144332	chr20	34987601	34987800	+	0	NA	intron (NM_020884, intron 17 of 44)	intron (NM_020884, intron 17 of 44)	-2676	NR_030223	574501		NR_030223	ENSG00000207635	MIR499A	MIR499|MIRN499|hsa-mir-499a|mir-499a	microRNA 499a	ncRNA
18792	chr1	167599851	167600700	+	0	NA	Intergenic	Intergenic	-29918	NM_001322923	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
187828	chr5	146875451	146875750	+	0	NA	intron (NM_181678, intron 2 of 10)	intron (NM_181678, intron 2 of 10)	3157	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
182476	chr5	62383151	62383250	+	0	NA	intron (NM_004520, intron 19 of 19)	AluSx|SINE|Alu	20705	NM_014473	27292		NM_014473	ENSG00000086189	DIMT1	DIM1|DIMT1L|HSA9761|HUSSY5	DIM1 rRNA methyltransferase and ribosome maturation factor	protein-coding
115812	chr19	16446851	16447850	+	0	NA	intron (NM_021235, intron 1 of 22)	L1ME3G|LINE|L1	24620	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
155892	chr22	39527671	39528080	+	0	NA	Intergenic	Intergenic	4873	NR_130151	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
169081	chr3	153680601	153680830	+	0	NA	intron (NR_146713, intron 2 of 6)	intron (NR_146713, intron 2 of 6)	81811	NR_146713	105374165		NR_146713		LINC02006	-	long intergenic non-protein coding RNA 2006	ncRNA
105458	chr17	83039371	83039530	+	0	NA	intron (NR_135465, intron 3 of 13)	CpG	12320	NR_135465	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
3138	chr1	12472151	12472330	+	0	NA	intron (NM_018156, intron 66 of 68)	HAL1|LINE|L1	-35006	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
23260	chr1	227886371	227886530	+	0	NA	Intergenic	Intergenic	55233	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
22974	chr1	226075421	226076350	+	0	NA	Intergenic	Intergenic	-7690	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
102990	chr17	76735901	76736700	+	0	NA	promoter-TSS (NM_001242534)	promoter-TSS (NM_001242534)	248	NR_030366	693221		NR_030366	ENSG00000283805	MIR636	MIRN636|hsa-mir-636	microRNA 636	ncRNA
126496	chr2	28404251	28404350	+	0	NA	exon (NM_005253, exon 2 of 4)	exon (NM_005253, exon 2 of 4)	-9628	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
58284	chr12	130386421	130387310	+	0	NA	Intergenic	Intergenic	48978	NM_001190971	9271		NM_004764	ENSG00000125207	PIWIL1	CT80.1|HIWI|MIWI|PIWI	piwi like RNA-mediated gene silencing 1	protein-coding
138525	chr2	207467701	207468100	+	0	NA	Intergenic	MARNA|DNA|TcMar-Mariner	-62062	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123325	chr19	53584701	53585100	+	0	NA	Intergenic	AluSx1|SINE|Alu	18597	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
11820	chr1	92842151	92842450	+	0	NA	TTS (NM_000969)	TTS (NM_000969)	1581	NR_002444	26782		NR_002444	ENSG00000207523	SNORA66	RNU66|U66	small nucleolar RNA, H/ACA box 66	snoRNA
211871	chr7	111029301	111029900	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-61406	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
202140	chr6	155104251	155104950	+	0	NA	intron (NM_001384546, intron 2 of 26)	AluSc8|SINE|Alu	-2387	NM_001384547	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
126837	chr2	31216701	31216900	+	0	NA	intron (NM_001321270, intron 2 of 21)	intron (NM_001321270, intron 2 of 21)	715	NM_001145122	440854		NM_001145122	ENSG00000214711	CAPN14	-	calpain 14	protein-coding
102646	chr17	76048451	76049380	+	0	NA	intron (NR_048541, intron 8 of 14)	intron (NR_048541, intron 8 of 14)	4741	NM_001260503	6730		NM_014230	ENSG00000167881	SRP68	SCN10	signal recognition particle 68	protein-coding
20151	chr1	192600251	192600580	+	0	NA	Intergenic	Intergenic	24642	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
189918	chr5	177368351	177368530	+	0	NA	intron (NM_006480, intron 8 of 14)	intron (NM_006480, intron 8 of 14)	10516	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
47932	chr12	6820201	6820400	+	0	NA	3' UTR (NM_000616, exon 10 of 10)	3' UTR (NM_000616, exon 10 of 10)	-1521	NM_014449	27239		NM_014449	ENSG00000250510	GPR162	A-2|GRCA	G protein-coupled receptor 162	protein-coding
108824	chr18	78986251	78986350	+	0	NA	intron (NM_171999, intron 1 of 2)	intron (NM_171999, intron 1 of 2)	6025	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
159647	chr3	15318551	15318850	+	0	NA	intron (NM_001018009, intron 2 of 8)	AluSz6|SINE|Alu	13886	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
46607	chr11	128568251	128568550	+	0	NA	intron (NM_001143820, intron 2 of 9)	intron (NM_001143820, intron 2 of 9)	19158	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
18981	chr1	169108401	169108600	+	0	NA	intron (NM_001677, intron 1 of 5)	intron (NM_001677, intron 1 of 5)	1810	NM_001677	481		NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
231823	chr9	132574951	132575430	+	0	NA	Intergenic	Intergenic	-7416	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
124693	chr2	3535771	3536230	+	0	NA	intron (NR_148532, intron 9 of 10)	intron (NR_148532, intron 9 of 10)	-16469	NM_018269	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
20858	chr1	201954851	201956230	+	0	NA	promoter-TSS (NM_006335)	promoter-TSS (NM_006335)	37	NM_006335	10440		NM_006335	ENSG00000134375	TIMM17A	TIM17|TIM17A	translocase of inner mitochondrial membrane 17A	protein-coding
213397	chr7	136115301	136115570	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-138076	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
65280	chr14	50007871	50008030	+	0	NA	promoter-TSS (NR_126498)	promoter-TSS (NR_126498)	-430	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
37641	chr11	22245071	22245250	+	0	NA	intron (NM_213599, intron 9 of 21)	L1PA16|LINE|L1	52075	NM_001142649	203859		NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|LGMDR12|TMEM16E	anoctamin 5	protein-coding
157449	chr22	45245301	45245500	+	0	NA	Intergenic	Intergenic	-4506	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
14109	chr1	120926021	120927080	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-12436	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
53330	chr12	64624101	64624600	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-1745	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52850	chr12	57101971	57103550	+	0	NA	intron (NR_033659, intron 11 of 20)	intron (NR_033659, intron 11 of 20)	7529	NM_001178079	6778		NM_003153	ENSG00000166888	STAT6	D12S1644|HIES6|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6	protein-coding
235755	chrX	48970001	48970600	+	0	NA	5' UTR (NM_004979, exon 1 of 6)	5' UTR (NM_004979, exon 1 of 6)	1544	NM_004979	3750		NM_004979	ENSG00000102057	KCND1	KV4.1	potassium voltage-gated channel subfamily D member 1	protein-coding
63673	chr14	21068251	21069290	+	0	NA	intron (NM_001282211, intron 1 of 14)	intron (NM_001282211, intron 1 of 14)	-1534	NM_001278529	55701		NM_018071	ENSG00000165801	ARHGEF40	SOLO	Rho guanine nucleotide exchange factor 40	protein-coding
169200	chr3	156814301	156814980	+	0	NA	intron (NR_038387, intron 1 of 2)	intron (NR_038387, intron 1 of 2)	2422	NR_038387	730091		NR_038387	ENSG00000240875	LINC00886	-	long intergenic non-protein coding RNA 886	ncRNA
60958	chr13	46575321	46575580	+	0	NA	intron (NM_015116, intron 1 of 18)	intron (NM_015116, intron 1 of 18)	22280	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
174242	chr4	37948421	37948880	+	0	NA	intron (NM_015173, intron 2 of 19)	L1MB7|LINE|L1	-11748	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
21130	chr1	203651671	203652200	+	0	NA	intron (NM_001365784, intron 1 of 20)	AluSx1|SINE|Alu	23998	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
179106	chr4	168634301	168634630	+	0	NA	intron (NM_001166109, intron 1 of 18)	intron (NM_001166109, intron 1 of 18)	2887	NM_001166109	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
165513	chr3	100316451	100317180	+	0	NA	intron (NM_001199198, intron 16 of 18)	AluSz|SINE|Alu	-17942	NM_020202	56954		NM_020202	ENSG00000114021	NIT2	HEL-S-8a	nitrilase family member 2	protein-coding
143007	chr20	20593651	20593750	+	0	NA	intron (NM_020343, intron 16 of 39)	intron (NM_020343, intron 16 of 39)	118944	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
56509	chr12	116358701	116359680	+	0	NA	Intergenic	Intergenic	69128	NR_039683	100616309		NR_039683	ENSG00000264037	MIR4472-2	-	microRNA 4472-2	ncRNA
118026	chr19	34191721	34192000	+	0	NA	intron (NM_001384434, intron 1 of 9).2	intron (NM_001384434, intron 1 of 9).2	19356	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
82281	chr16	15427501	15427950	+	0	NA	Intergenic	MIRc|SINE|MIR	-6863	NM_033201	89927		NM_033201	ENSG00000166780	BMERB1	C16orf45|MINP	bMERB domain containing 1	protein-coding
8921	chr1	43991101	43992600	+	0	NA	promoter-TSS (NR_146064)	promoter-TSS (NR_146064)	3	NM_001349128	149473		NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding
26242	chr10	14601701	14602500	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	2301	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
190434	chr5	179838801	179839000	+	0	NA	TTS (NM_001142299)	TTS (NM_001142299)	17995	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
50493	chr12	47790871	47791230	+	0	NA	intron (NR_160435, intron 15 of 24)	intron (NR_160435, intron 15 of 24)	17812	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
114448	chr19	12705551	12705850	+	0	NA	TTS (NR_002751)	TTS (NR_002751)	818	NR_002751	26810		NR_002751	ENSG00000209702	SNORD41	RNU41|U41	small nucleolar RNA, C/D box 41	snoRNA
185341	chr5	126853271	126854700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	76849	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
31303	chr10	92600801	92601000	+	0	NA	intron (NM_004523, intron 1 of 21)	AluSg7|SINE|Alu	7770	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
75535	chr15	66692921	66693530	+	0	NA	Intergenic	Intergenic	-9011	NM_005585	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
204177	chr7	2451321	2452680	+	0	NA	Intergenic	Intergenic	24383	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
161508	chr3	42577371	42577730	+	0	NA	intron (NM_001201572, intron 1 of 6)	L1MD2|LINE|L1	-4290	NM_016305	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
134179	chr2	134288571	134289600	+	0	NA	intron (NM_001371457, intron 3 of 16)	intron (NM_001371457, intron 3 of 16)	35013	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
33855	chr10	124354871	124355230	+	0	NA	Intergenic	Intergenic	63873	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
32335	chr10	102238121	102239050	+	0	NA	intron (NM_005029, intron 1 of 3)	intron (NM_005029, intron 1 of 3)	2927	NM_005029	5309		NM_005029	ENSG00000107859	PITX3	ASGD1|ASMD|ASOD|CTPP4|CTRCT11|PTX3	paired like homeodomain 3	protein-coding
78122	chr15	90349651	90350350	+	0	NA	promoter-TSS (NR_028287)	promoter-TSS (NR_028287)	-553	NR_028287	23766		NM_032568		GABARAPL3	ATG8D	GABA type A receptor associated protein like 3 (pseudogene)	pseudo
203401	chr7	20571	21000	+	0	NA	Intergenic	Intergenic	128653	NR_134325	102723672		NR_134325		LINC03015	-	long intergenic non-protein coding RNA 3015	ncRNA
49465	chr12	25089451	25090150	+	0	NA	intron (NR_159368, intron 13 of 20)	intron (NR_159368, intron 13 of 20)	37094	NM_006152	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
64058	chr14	22547421	22547830	+	0	NA	Intergenic	Intergenic	9437	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
177593	chr4	120841651	120841950	+	0	NA	intron (NM_001379104, intron 3 of 15)	intron (NM_001379104, intron 3 of 15)	80926	NM_001379106	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
57701	chr12	122855651	122856500	+	0	NA	exon (NM_003959, exon 14 of 32)	exon (NM_003959, exon 14 of 32)	20618	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
110770	chr19	2415921	2416750	+	0	NA	intron (NM_001385642, intron 11 of 17)	MIRc|SINE|MIR	11251	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
44894	chr11	114633751	114634250	+	0	NA	Intergenic	L1PA3|LINE|L1	-38214	NM_001077639	54827		NM_017678	ENSG00000137634	NXPE4	C11orf33|FAM55D	neurexophilin and PC-esterase domain family member 4	protein-coding
62874	chr13	110644821	110645530	+	0	NA	intron (NR_147942, intron 13 of 16)	intron (NR_147942, intron 13 of 16)	29547	NM_001242881	55739		NM_018210	ENSG00000213995	NAXD	CARKD|LP3298|PEBEL2	NAD(P)HX dehydratase	protein-coding
92530	chr17	8931421	8931680	+	0	NA	intron (NM_001142633, intron 1 of 18)	L1MEc|LINE|L1	-19033	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
207220	chr7	43659821	43660380	+	0	NA	intron (NM_001371313, intron 1 of 8)	MLT1B|LTR|ERVL-MaLR	69423	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
198921	chr6	110233751	110234200	+	0	NA	Intergenic	Intergenic	53548	NM_015891	51362		NM_015891	ENSG00000168438	CDC40	EHB3|PCH15|PRP17|PRPF17	cell division cycle 40	protein-coding
199231	chr6	111819921	111820180	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	53021	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
30298	chr10	75230471	75231480	+	0	NA	exon (NM_001184823, exon 10 of 10)	exon (NM_001184823, exon 10 of 10)	4982	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
84862	chr16	31148221	31148480	+	0	NA	intron (NM_173502, intron 5 of 14)	CpG	1716	NM_173502	146547		NM_173502	ENSG00000178226	PRSS36	-	serine protease 36	protein-coding
28229	chr10	45421201	45421880	+	0	NA	intron (NM_001256153, intron 4 of 13).2	intron (NM_001256153, intron 4 of 13).2	31581	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
49490	chr12	25248401	25248600	+	0	NA	intron (NM_001369786, intron 1 of 5)	intron (NM_001369786, intron 1 of 5)	2429	NM_033360	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
83612	chr16	28200671	28201350	+	0	NA	intron (NM_015171, intron 1 of 23)	intron (NM_015171, intron 1 of 23)	10955	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
97443	chr17	43608301	43608600	+	0	NA	Intergenic	MER66B|LTR|ERV1	53113	NM_013999	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
42584	chr11	72005401	72005600	+	0	NA	intron (NM_001286561, intron 22 of 26)	intron (NM_001286561, intron 22 of 26)	5573	NM_001145055	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
96246	chr17	39822071	39823300	+	0	NA	intron (NM_001257408, intron 2 of 6)	AluY|SINE|Alu	41503	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
208849	chr7	73704851	73704950	+	0	NA	intron (NM_001165903, intron 4 of 9)	intron (NM_001165903, intron 4 of 9)	-6417	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
138847	chr2	216543721	216543980	+	0	NA	Intergenic	AluY|SINE|Alu	45006	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
76149	chr15	72650501	72650700	+	0	NA	Intergenic	Intergenic	-4097	NM_018652	55889		NM_018652	ENSG00000215186	GOLGA6B	GOLGA|GOLGA6D	golgin A6 family member B	protein-coding
22627	chr1	223684071	223684480	+	0	NA	Intergenic	Intergenic	-17318	NM_001146068	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
153287	chr22	24165271	24165630	+	0	NA	intron (NM_012295, intron 30 of 36)	intron (NM_012295, intron 30 of 36)	-16037	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
126468	chr2	28362951	28363380	+	0	NA	Intergenic	Intergenic	-29693	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
4043	chr1	18956301	18957590	+	0	NA	promoter-TSS (NM_001136265)	promoter-TSS (NM_001136265)	-269	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
43770	chr11	86246651	86246850	+	0	NA	intron (NM_001330334, intron 1 of 9)	intron (NM_001330334, intron 1 of 9)	1997	NM_003797	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
225717	chr9	36765621	36766420	+	0	NA	Intergenic	Intergenic	57579	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA
76347	chr15	74435171	74435950	+	0	NA	Intergenic	Intergenic	-1602	NM_001146029	8482		NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|PFIC11|SEMAK1|SEMAL	semaphorin 7A (JohnMiltonHagen blood group)	protein-coding
169814	chr3	177106221	177106480	+	0	NA	intron (NM_001374330, intron 1 of 14)	intron (NM_001374330, intron 1 of 14)	90128	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
14936	chr1	147597001	147597200	+	0	NA	intron (NM_004326, intron 1 of 9)	intron (NM_004326, intron 1 of 9)	55599	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
181151	chr5	38845671	38846030	+	0	NA	promoter-TSS (NM_001323504)	promoter-TSS (NM_001323504)	-8	NM_001323507	9180		NM_003999	ENSG00000145623	OSMR	IL-31R-beta|IL-31RB|OSMRB|OSMRbeta|PLCA1	oncostatin M receptor	protein-coding
55784	chr12	108623351	108623450	+	0	NA	exon (NM_003006, exon 2 of 2)	exon (NM_003006, exon 2 of 2)	8681	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
75114	chr15	64504721	64504980	+	0	NA	intron (NM_015042, intron 2 of 9)	FLAM_C|SINE|Alu	44272	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
189692	chr5	176415871	176416950	+	0	NA	non-coding (NR_157088, exon 1 of 7)	non-coding (NR_157088, exon 1 of 7)	129	NM_007097	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
124288	chr19	57838751	57839150	+	0	NA	intron (NM_001204818, intron 1 of 3)	intron (NM_001204818, intron 1 of 3)	8651	NM_001204818	100293516		NM_001204818	ENSG00000269343	ZNF587B	-	zinc finger protein 587B	protein-coding
157476	chr22	45297971	45298130	+	0	NA	Intergenic	Intergenic	-10910	NR_146323	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
2180	chr1	8520451	8521050	+	0	NA	intron (NM_012102, intron 8 of 23)	intron (NM_012102, intron 8 of 23)	-25837	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
60241	chr13	40570621	40571630	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	-90119	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
83435	chr16	27284601	27285200	+	0	NA	intron (NR_037184, intron 2 of 4)	MLT1I|LTR|ERVL-MaLR	-16128	NM_145080	197370		NM_145080	ENSG00000169189	NSMCE1	NSE1	NSE1 homolog, SMC5-SMC6 complex component	protein-coding
172793	chr4	2950601	2950800	+	0	NA	non-coding (NR_015453, exon 4 of 4)	non-coding (NR_015453, exon 4 of 4)	12706	NM_001291978	8602		NM_003703	ENSG00000087269	NOP14	C4orf9|NOL14|RES4-25|RES425|UTP2	NOP14 nucleolar protein	protein-coding
138341	chr2	203861271	203861630	+	0	NA	Intergenic	Intergenic	-6321	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
123541	chr19	54363651	54363950	+	0	NA	intron (NM_001289027, intron 1 of 8).3	L1MA7|LINE|L1	1131	NR_110279	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
118277	chr19	35277821	35278150	+	0	NA	intron (NM_001321150, intron 5 of 7)	intron (NM_001321150, intron 5 of 7)	-4543	NM_021175	57817		NM_021175	ENSG00000105697	HAMP	HEPC|HFE2B|LEAP1|PLTR	hepcidin antimicrobial peptide	protein-coding
43250	chr11	75527171	75528830	+	0	NA	Intergenic	Intergenic	-2059	NM_030792	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
191842	chr6	15188701	15188980	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-57229	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
69014	chr14	91504371	91505480	+	0	NA	intron (NR_158976, intron 2 of 16)	intron (NR_158976, intron 2 of 16)	5385	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
152828	chr22	21945801	21946000	+	0	NA	exon (NM_014634, exon 2 of 8)	exon (NM_014634, exon 2 of 8)	6948	NM_014634	9647		NM_014634	ENSG00000100034	PPM1F	CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2	protein phosphatase, Mg2+/Mn2+ dependent 1F	protein-coding
15292	chr1	149837151	149837250	+	0	NA	intron (NR_168447, intron 1 of 1)	AluYc|SINE|Alu	4004	NM_001005464	333932		NM_001005464	ENSG00000203852	H3C15	H3/n|H3/o|H3C13|H3C14|HIST2H3A	H3 clustered histone 15	protein-coding
99748	chr17	50945971	50947130	+	0	NA	Intergenic	Intergenic	-78572	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
232677	chr9	136515251	136515830	+	0	NA	exon (NM_017617, exon 11 of 34)	exon (NM_017617, exon 11 of 34)	4086	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
102679	chr17	76106521	76106780	+	0	NA	Intergenic	Intergenic	-2863	NM_001375976	23265		NM_015219	ENSG00000182473	EXOC7	2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|NEDSEBA|YJL085W	exocyst complex component 7	protein-coding
65466	chr14	51827871	51828580	+	0	NA	Intergenic	Intergenic	-32387	NM_001243773	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
29306	chr10	69325171	69325330	+	0	NA	intron (NM_000188, intron 1 of 17)	AluY|SINE|Alu	6403	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
93482	chr17	18921721	18922080	+	0	NA	intron (NM_001353102, intron 9 of 11)	L1MB5|LINE|L1	-28776	NM_001282417	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
38555	chr11	45922101	45923530	+	0	NA	intron (NM_001300721, intron 1 of 13)	CpG	159	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
218074	chr8	38925401	38925800	+	0	NA	intron (NM_021623, intron 2 of 11)	intron (NM_021623, intron 2 of 11)	24254	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
172694	chr4	2761501	2762150	+	0	NA	Intergenic	Intergenic	-5489	NM_024309	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
110123	chr19	1583601	1583800	+	0	NA	intron (NM_001281453, intron 3 of 6)	AluJr4|SINE|Alu	9165	NM_001281454	53615		NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
167924	chr3	136176851	136176950	+	0	NA	intron (NM_018133, intron 1 of 1)	MSTB|LTR|ERVL-MaLR	17568	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
40161	chr11	62879801	62881000	+	0	NA	promoter-TSS (NM_001013251)	promoter-TSS (NM_001013251)	-496	NM_001013251	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
98350	chr17	46330271	46330700	+	0	NA	exon (NM_014834, exon 9 of 14).2	exon (NM_014834, exon 9 of 14).2	31281	NM_001039083	100506084		NM_001039083	ENSG00000228696	ARL17B	ARL17|ARL17A	ADP ribosylation factor like GTPase 17B	protein-coding
11738	chr1	91947201	91947400	+	0	NA	Intergenic	L2c|LINE|L2	-2071	NM_001242810	676		NM_001726	ENSG00000137948	BRDT	BRD6|CT9|SPGF21	bromodomain testis associated	protein-coding
10036	chr1	58324671	58325030	+	0	NA	intron (NM_001379461, intron 4 of 20)	intron (NM_001379461, intron 4 of 20)	-74347	NM_001353980	1600		NM_021080	ENSG00000173406	DAB1	SCA37	DAB adaptor protein 1	protein-coding
227399	chr9	89529221	89530250	+	0	NA	Intergenic	L1MA6|LINE|L1	-31622	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
164118	chr3	56694051	56694230	+	0	NA	Intergenic	Intergenic	-10875	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
143834	chr20	32509251	32511080	+	0	NA	non-coding (NR_110619, exon 1 of 3)	non-coding (NR_110619, exon 1 of 3)	206	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
211520	chr7	105309401	105310280	+	0	NA	intron (NM_001350742, intron 2 of 16)	L2b|LINE|L2	-11061	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
101021	chr17	64776371	64777500	+	0	NA	intron (NR_026899, intron 3 of 12)	CpG	-3824	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
182449	chr5	62314271	62315500	+	0	NA	intron (NM_001243952, intron 2 of 20)	AluSz|SINE|Alu	8679	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
69837	chr14	99236521	99237650	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	35112	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
64126	chr14	22851001	22851200	+	0	NA	Intergenic	Intergenic	14515	NM_004995	4323		NM_004995	ENSG00000157227	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14	protein-coding
155725	chr22	39133301	39133500	+	0	NA	3' UTR (NM_175709, exon 6 of 6)	3' UTR (NM_175709, exon 6 of 6)	19280	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
68780	chr14	91145471	91145630	+	0	NA	intron (NM_001102367, intron 2 of 14)	intron (NM_001102367, intron 2 of 14)	19124	NR_003709	100124539		NR_003709	ENSG00000221102	SNORA11B	-	small nucleolar RNA, H/ACA box 11B	snoRNA
225560	chr9	35910571	35911730	+	0	NA	3' UTR (NM_001348107, exon 2 of 2)	3' UTR (NM_001348107, exon 2 of 2)	1660	NM_001348107	158376		NM_001348107	ENSG00000235387	SPAAR	LINC00961|SPAR	small regulatory polypeptide of amino acid response	protein-coding
130171	chr2	77593221	77593300	+	0	NA	Intergenic	L1PA3|LINE|L1	-70827	NR_146416	80059		NM_024993	ENSG00000176204	LRRTM4	-	leucine rich repeat transmembrane neuronal 4	protein-coding
4860	chr1	23741571	23741730	+	0	NA	Intergenic	AluJo|SINE|Alu	-1716	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
216732	chr8	22446051	22447230	+	0	NA	intron (NM_005605, intron 1 of 13)	AluSx|SINE|Alu	5562	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
40868	chr11	65095751	65097250	+	0	NA	intron (NR_073519, intron 1 of 9)	CpG	286	NR_073519	738		NM_013265	ENSG00000149823	VPS51	ANG2|ANG3|C11orf2|C11orf3|FFR|PCH13	VPS51 subunit of GARP complex	protein-coding
99971	chr17	57552371	57552800	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	-28988	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
83957	chr16	29148101	29149730	+	0	NA	Intergenic	Intergenic	74073	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
23486	chr1	228634521	228636130	+	0	NA	Intergenic	CpG	-4817	NR_023366	100169755		NR_023366	ENSG00000200381	RNA5S4	RN5S4	RNA, 5S ribosomal 4	rRNA
61983	chr13	80048721	80049050	+	0	NA	Intergenic	Intergenic	37808	NR_104138	101515984		NR_104138		LINC01080	TCONS_00021856	long intergenic non-protein coding RNA 1080	ncRNA
234968	chrX	39309371	39310530	+	0	NA	intron (NR_038968, intron 2 of 3)	intron (NR_038968, intron 2 of 3)	17412	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
39201	chr11	57491521	57491900	+	0	NA	intron (NM_003627, intron 9 of 14)	intron (NM_003627, intron 9 of 14)	23199	NM_001198810	8501		NM_003627	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	solute carrier family 43 member 1	protein-coding
11569	chr1	91513201	91514080	+	0	NA	intron (NM_001134420, intron 7 of 11)	intron (NM_001134420, intron 7 of 11)	12532	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
151853	chr22	18575451	18575900	+	0	NA	Intergenic	Intergenic	-26847	NR_003563	728233		NR_003563	ENSG00000290425	PI4KAP1	-	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudo
34264	chr10	131881601	131882000	+	0	NA	Intergenic	Intergenic	-19208	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
15561	chr1	150551871	150553150	+	0	NA	TTS (NR_036211)	TTS (NR_036211)	581	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
185847	chr5	132483121	132483500	+	0	NA	non-coding (NR_149068, exon 8 of 8)	non-coding (NR_149068, exon 8 of 8)	7463	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
225689	chr9	36489571	36489930	+	0	NA	Intergenic	L2c|LINE|L2	-83112	NR_046337	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
99302	chr17	49799721	49800100	+	0	NA	intron (NM_001199155, intron 4 of 13)	AluJo|SINE|Alu	11229	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
14307	chr1	143805371	143805730	+	0	NA	Intergenic	L1PA17|LINE|L1	11950	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
126004	chr2	25312271	25312430	+	0	NA	intron (NR_135490, intron 2 of 23)	intron (NR_135490, intron 2 of 23)	16371	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
224318	chr9	6705571	6705980	+	0	NA	Intergenic	Intergenic	-15088	NM_001146696	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
208876	chr7	73770321	73770880	+	0	NA	promoter-TSS (NM_001306)	promoter-TSS (NM_001306)	-330	NM_001306	1365		NM_001306	ENSG00000165215	CLDN3	C7orf1|CPE-R2|CPETR2|HRVP1|RVP1	claudin 3	protein-coding
206550	chr7	35644151	35644850	+	0	NA	intron (NM_022373, intron 5 of 8)	AluSz|SINE|Alu	50635	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
194403	chr6	33013721	33013980	+	0	NA	Intergenic	L1MEh|LINE|L1	-4259	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
116051	chr19	17213021	17214000	+	0	NA	TTS (NM_001130065)	TTS (NM_001130065)	-1847	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
195005	chr6	35408301	35408700	+	0	NA	intron (NM_001171818, intron 3 of 8)	intron (NM_001171818, intron 3 of 8)	-43838	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
209753	chr7	87206321	87206780	+	0	NA	intron (NR_138030, intron 1 of 3)	MER44B|DNA|TcMar-Tigger	13182	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
21883	chr1	207800101	207800730	+	0	NA	Intergenic	Intergenic	1524	NR_029832	407026		NR_029832	ENSG00000284214	MIR29C	MIRN29C|miRNA29C|mir-29c	microRNA 29c	ncRNA
231241	chr9	129981071	129981230	+	0	NA	intron (NM_001363755, intron 2 of 15)	AluSq|SINE|Alu	62039	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
227093	chr9	85724301	85724500	+	0	NA	intron (NM_001330701, intron 1 of 25)	intron (NM_001330701, intron 1 of 25)	17554	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
211377	chr7	105007721	105008000	+	0	NA	Intergenic	AluSz6|SINE|Alu	6281	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
218938	chr8	60923071	60923650	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-12562	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
126331	chr2	27365271	27365430	+	0	NA	intron (NM_172195, intron 10 of 11)	AluSp|SINE|Alu	4702	NM_001318965	8890		NM_015636	ENSG00000115211	EIF2B4	EIF-2B|EIF2B|EIF2Bdelta|VWM4	eukaryotic translation initiation factor 2B subunit delta	protein-coding
167199	chr3	128307121	128307380	+	0	NA	intron (NM_021937, intron 4 of 6)	intron (NM_021937, intron 4 of 6)	-153336	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
87038	chr16	68281501	68282380	+	0	NA	intron (NM_001076785, intron 4 of 11)	intron (NM_001076785, intron 4 of 11)	17414	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
219228	chr8	66870351	66871080	+	0	NA	promoter-TSS (NM_001136161)	promoter-TSS (NM_001136161)	-56	NM_173518	157777		NM_173518	ENSG00000178460	MCMDC2	C8orf45	minichromosome maintenance domain containing 2	protein-coding
180445	chr5	10588971	10589130	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	24980	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
148443	chr20	63978411	63979000	+	0	NA	intron (NM_080621, intron 1 of 4)	intron (NM_080621, intron 1 of 4)	937	NM_080621	140700		NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
95370	chr17	35873751	35874100	+	0	NA	intron (NM_002985, intron 2 of 2).2	intron (NM_002985, intron 2 of 2).2	-5034	NR_135630	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
20410	chr1	198190221	198190480	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	33352	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
67698	chr14	73245621	73246530	+	0	NA	promoter-TSS (NR_135248)	promoter-TSS (NR_135248)	-74	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
97819	chr17	44866251	44866750	+	0	NA	intron (NM_001258354, intron 13 of 27)	AluSz6|SINE|Alu	18617	NM_016438	51751		NM_016438	ENSG00000131097	HIGD1B	CLST11240|CLST11240-15	HIG1 hypoxia inducible domain family member 1B	protein-coding
149675	chr21	33644501	33644700	+	0	NA	intron (NM_001331010, intron 1 of 38)	intron (NM_001331010, intron 1 of 38)	2099	NM_001331009	6453		NM_003024	ENSG00000205726	ITSN1	ITSN|SH3D1A|SH3P17	intersectin 1	protein-coding
13659	chr1	116554521	116555130	+	0	NA	intron (NR_026665, intron 1 of 5)	intron (NR_026665, intron 1 of 5)	5286	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
167042	chr3	126613501	126614030	+	0	NA	intron (NM_001173513, intron 12 of 14)	Tigger3b|DNA|TcMar-Tigger	41359	NM_052883	114112		NM_052883	ENSG00000197763	TXNRD3	TGR|TR2|TR2IT1|TRXR3|TXNR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1	thioredoxin reductase 3	protein-coding
150987	chr21	44343621	44343950	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-4395	NM_001271440	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
185525	chr5	131335401	131335900	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA4|LINE|L1	71597	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
213891	chr7	142451871	142452030	+	0	NA	intron (NM_001363538, intron 11 of 11)	L2c|LINE|L2	-22577	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
29937	chr10	73378721	73379550	+	0	NA	intron (NM_001320879, intron 10 of 11)	intron (NM_001320879, intron 10 of 11)	-20271	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
52418	chr12	55775121	55775580	+	0	NA	intron (NM_033082, intron 9 of 10)	AluSx|SINE|Alu	32228	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
234996	chrX	39777621	39777880	+	0	NA	Intergenic	Intergenic	-59811	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
54975	chr12	96315651	96316640	+	0	NA	intron (NM_002595, intron 3 of 16)	L1PA2|LINE|L1	60647	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
139202	chr2	219256451	219257100	+	0	NA	intron (NM_001355221, intron 1 of 3)	AluJr|SINE|Alu	-2167	NM_001278552	7277		NM_006000	ENSG00000127824	TUBA4A	ALS22|H2-ALPHA|TUBA1	tubulin alpha 4a	protein-coding
234640	chrX	20028321	20028780	+	0	NA	intron (NM_152780, intron 7 of 15)	intron (NM_152780, intron 7 of 15)	-11363	NR_037414	100500809		NR_037414	ENSG00000264566	MIR23C	hsa-mir-23c|mir-23c	microRNA 23c	ncRNA
175119	chr4	54940721	54941280	+	0	NA	Intergenic	L3b|LINE|CR1	184595	NM_002253	3791		NM_002253	ENSG00000128052	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor	protein-coding
196956	chr6	52787251	52787350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	16516	NM_001319059	2938		NM_145740	ENSG00000243955	GSTA1	GST-epsilon|GST2|GSTA1-1|GTH1	glutathione S-transferase alpha 1	protein-coding
29455	chr10	70468951	70469450	+	0	NA	Intergenic	Intergenic	-9567	NM_014431	27143		NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	phosphatase domain containing paladin 1	protein-coding
72375	chr15	31363301	31363780	+	0	NA	intron (NM_001302461, intron 1 of 1).3	AluSx1|SINE|Alu	36705	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
134146	chr2	134201801	134202200	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-52072	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
32213	chr10	101787571	101788850	+	0	NA	intron (NM_001142434, intron 13 of 14)	AluSq|SINE|Alu	-4797	NM_006993	10360		NM_006993	ENSG00000107833	NPM3	PORMIN|TMEM123	nucleophosmin/nucleoplasmin 3	protein-coding
209654	chr7	77912321	77912980	+	0	NA	intron (NM_001366086, intron 7 of 17)	intron (NM_001366086, intron 7 of 17)	72520	NM_001127359	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
35575	chr11	1690431	1691350	+	0	NA	Intergenic	Intergenic	-5261	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
25729	chr10	9025071	9025430	+	0	NA	Intergenic	L1ME4b|LINE|L1	127261	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
72423	chr15	31459101	31459380	+	0	NA	Intergenic	L1MC3|LINE|L1	132405	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
21721	chr1	206773951	206774380	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-1671	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
48683	chr12	10565751	10566050	+	0	NA	intron (NR_146456, intron 1 of 2)	L1PA7|LINE|L1	12521	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
147778	chr20	62552401	62552600	+	0	NA	promoter-TSS (NR_033263)	promoter-TSS (NR_033263)	-939	NR_033263	253868		NM_152757		CRMA	C20orf166-AS1|C20orf200|CARMA|MIR1-1HG-AS1|NCRNA00335	cardiomyocyte maturation associated lncRNA	ncRNA
162097	chr3	46900501	46900700	+	0	NA	intron (NM_001184744, intron 9 of 14)	intron (NM_001184744, intron 9 of 14)	18351	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
499	chr1	1182071	1182230	+	0	NA	intron (NM_001371649, intron 9 of 15)	intron (NM_001371649, intron 9 of 15)	2469	NM_153254	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
4111	chr1	19315351	19315850	+	0	NA	intron (NM_001040126, intron 2 of 7)	intron (NM_001040126, intron 2 of 7)	3274	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
80363	chr16	2518201	2519500	+	0	NA	intron (NM_001198569, intron 2 of 3)	intron (NM_001198569, intron 2 of 3)	-1521	NM_015944	51005		NM_015944	ENSG00000162066	AMDHD2	CGI-14	amidohydrolase domain containing 2	protein-coding
82806	chr16	21471751	21472250	+	0	NA	intron (NR_027155, intron 8 of 28)	intron (NR_027155, intron 8 of 28)	-29526	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
196606	chr6	44241351	44241850	+	0	NA	Intergenic	AluJo|SINE|Alu	-4566	NM_001271970	3326		NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
137454	chr2	196989601	196989800	+	0	NA	3' UTR (NM_001367497, exon 28 of 28)	3' UTR (NM_001367497, exon 28 of 28)	-62993	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
226207	chr9	65391501	65391930	+	0	NA	Intergenic	SST1|Satellite|centr	-106506	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
142986	chr20	20188701	20188900	+	0	NA	intron (NM_015585, intron 14 of 26)	L1ME3A|LINE|L1	132154	NM_001167816	26074		NM_015585	ENSG00000089101	CFAP61	C20orf26|CaM-IP3|SPGF84|dJ1002M8.3|dJ1178H5.4	cilia and flagella associated protein 61	protein-coding
209904	chr7	92131471	92131630	+	0	NA	intron (NM_000786, intron 2 of 9)	intron (NM_000786, intron 2 of 9)	2927	NM_000786	1595		NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
66152	chr14	60331221	60332480	+	0	NA	Intergenic	Intergenic	8654	NR_146481	101927729		NR_146481	ENSG00000258556	LINC02322	-	long intergenic non-protein coding RNA 2322	ncRNA
6190	chr1	27444801	27445000	+	0	NA	intron (NM_006990, intron 1 of 8)	L2c|LINE|L2	45267	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
100675	chr17	63768751	63769580	+	0	NA	intron (NM_020198, intron 1 of 12)	AluJr|SINE|Alu	4432	NM_020198	57003		NM_020198	ENSG00000108588	CCDC47	GK001|MSTP041|THNS	coiled-coil domain containing 47	protein-coding
94193	chr17	28570671	28573130	+	0	NA	promoter-TSS (NM_033198)	promoter-TSS (NM_033198)	-376	NM_033198	94005		NM_033198	ENSG00000087111	PIGS	DEE95|GPIBD18|PIG-S	phosphatidylinositol glycan anchor biosynthesis class S	protein-coding
86061	chr16	57588651	57589100	+	0	NA	Intergenic	L1ME3F|LINE|L1	-30863	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
37010	chr11	12007951	12010200	+	0	NA	promoter-TSS (NM_015881)	promoter-TSS (NM_015881)	7	NM_015881	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
50075	chr12	44820321	44820850	+	0	NA	intron (NM_001145108, intron 2 of 19)	AluY|SINE|Alu	55076	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
56421	chr12	113312521	113312800	+	0	NA	intron (NR_152403, intron 11 of 15)	intron (NR_152403, intron 11 of 15)	21137	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
211093	chr7	102494401	102495750	+	0	NA	intron (NM_001367767, intron 12 of 20)	CpG-26267	-16153	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
227377	chr9	89497801	89498800	+	0	NA	promoter-TSS (NM_001371194)	promoter-TSS (NM_001371194)	-187	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
126447	chr2	28240001	28240200	+	0	NA	intron (NM_199193, intron 9 of 13)	AluJr|SINE|Alu	-33139	NR_120504	100505736		NR_120504		LOC100505736	-	uncharacterized LOC100505736	ncRNA
26118	chr10	13528321	13529380	+	0	NA	5' UTR (NM_001370075, exon 1 of 10)	5' UTR (NM_001370075, exon 1 of 10)	164	NM_001370075	222389		NM_152751	ENSG00000165626	BEND7	C10orf30	BEN domain containing 7	protein-coding
95529	chr17	36576501	36576850	+	0	NA	intron (NM_024835, intron 6 of 13)	(AT)n|Simple_repeat|Simple_repeat	-15204	NM_024308	79154		NM_024308	ENSG00000278535	DHRS11	ARPG836|SDR24C1|spDHRS11	dehydrogenase/reductase 11	protein-coding
91521	chr17	4969401	4970480	+	0	NA	promoter-TSS (NR_106924)	promoter-TSS (NR_106924)	-169	NR_106924	102465521		NR_106924	ENSG00000274300	MIR6864	hsa-mir-6864	microRNA 6864	ncRNA
13896	chr1	119674951	119675130	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-26774	NM_001080470	90874		NM_138366	ENSG00000143067	ZNF697	-	zinc finger protein 697	protein-coding
84372	chr16	30245271	30245430	+	0	NA	intron (NM_001321892, intron 3 of 8)	intron (NM_001321892, intron 3 of 8)	505	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
138868	chr2	216850001	216850200	+	0	NA	Intergenic	Intergenic	9964	NM_003284	7141		NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1	protein-coding
144560	chr20	35741321	35743600	+	0	NA	promoter-TSS (NR_040724)	promoter-TSS (NR_040724)	-124	NR_136587	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
38448	chr11	45333621	45333950	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-21586	NR_120557	101928812		NR_120557	ENSG00000254427	LINC02696	-	long intergenic non-protein coding RNA 2696	ncRNA
107642	chr18	48970071	48970650	+	0	NA	Intergenic	AluYh3|SINE|Alu	-19649	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
200191	chr6	130980601	130980800	+	0	NA	intron (NM_001350314, intron 1 of 15)	LTR54|LTR|ERV1	-10217	NM_001350299	2037		NM_001431	ENSG00000079819	EPB41L2	4.1-G|4.1G	erythrocyte membrane protein band 4.1 like 2	protein-coding
169257	chr3	157162601	157163600	+	0	NA	Intergenic	Intergenic	-2953	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
89964	chr16	89792321	89792580	+	0	NA	intron (NM_001286167, intron 12 of 42)	intron (NM_001286167, intron 12 of 42)	24197	NM_001286167	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
159940	chr3	17150421	17150730	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	217379	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
84901	chr16	31209601	31210050	+	0	NA	Intergenic	AluJo|SINE|Alu	-4294	NM_001008274	493829		NM_001008274	ENSG00000177238	TRIM72	MG53	tripartite motif containing 72	protein-coding
141009	chr2	238160321	238160800	+	0	NA	intron (NM_001291832, intron 1 of 7)	intron (NM_001291832, intron 1 of 7)	1590	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
149941	chr21	36319601	36322080	+	0	NA	intron (NM_001320445, intron 1 of 15)	intron (NM_001320445, intron 1 of 15)	643	NM_015358	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
135130	chr2	157431651	157432330	+	0	NA	intron (NM_004288, intron 3 of 7)	L3|LINE|CR1	12099	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
62364	chr13	99220371	99221130	+	0	NA	intron (NR_026644, intron 1 of 8)	intron (NR_026644, intron 1 of 8)	19896	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
157839	chr22	48084051	48084580	+	0	NA	Intergenic	L2c|LINE|L2	-190049	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	ncRNA
239442	chrY	56706871	56707300	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-247170	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
144689	chr20	36455501	36455900	+	0	NA	intron (NM_001365621, intron 7 of 12)	intron (NM_001365621, intron 7 of 12)	-5768	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
235636	chrX	48477121	48477380	+	0	NA	intron (NM_177439, intron 2 of 13)	intron (NM_177439, intron 2 of 13)	1051	NM_177439	24140		NM_012280	ENSG00000068438	FTSJ1	CDLIV|JM23|MRX44|MRX9|SPB1|TRMT7|XLID9	FtsJ RNA 2'-O-methyltransferase 1	protein-coding
71488	chr14	105986051	105987000	+	0	NA	Intergenic	Intergenic	-14256	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
26811	chr10	23448671	23449500	+	0	NA	Intergenic	Intergenic	10010	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
187565	chr5	142789471	142790030	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	18523	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
154561	chr22	36239101	36240580	+	0	NA	promoter-TSS (NM_030882)	promoter-TSS (NM_030882)	114	NM_145637	23780		NM_030882	ENSG00000128335	APOL2	APOL-II|APOL3	apolipoprotein L2	protein-coding
49823	chr12	32105151	32105500	+	0	NA	Intergenic	AluSz|SINE|Alu	-1482	NM_001363603	636		NM_001714	ENSG00000151746	BICD1	BICD|bic-D 1	BICD cargo adaptor 1	protein-coding
88189	chr16	81739971	81740130	+	0	NA	Intergenic	AluSz|SINE|Alu	-39241	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
49992	chr12	42227471	42227630	+	0	NA	intron (NR_135140, intron 2 of 6)	SVA_F|Retroposon|SVA	10698	NM_005748	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
151289	chr21	45504301	45504900	+	0	NA	intron (NM_001379500, intron 34 of 41)	intron (NM_001379500, intron 34 of 41)	26334	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
86303	chr16	58661271	58661430	+	0	NA	Intergenic	Intergenic	22981	NM_001308384	55238		NM_018231	ENSG00000103042	SLC38A7	SNAT7	solute carrier family 38 member 7	protein-coding
236035	chrX	55451601	55452980	+	0	NA	promoter-TSS (NR_039764)	promoter-TSS (NR_039764)	163	NM_014061	28986		NM_014061	ENSG00000187601	MAGEH1	APR-1|APR1|MAGEH	MAGE family member H1	protein-coding
63505	chr13	114232371	114232730	+	0	NA	Intergenic	MER4CL34|LTR|ERV1	-2295	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
22121	chr1	211737851	211737950	+	0	NA	Intergenic	L3|LINE|CR1	62138	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
162373	chr3	47961621	47962280	+	0	NA	intron (NM_001385675, intron 3 of 18)	MER66C|LTR|ERV1	54466	NM_001385692	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
4271	chr1	19660751	19660850	+	0	NA	Intergenic	Intergenic	-4075	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
174126	chr4	36221951	36222050	+	0	NA	intron (NR_146894, intron 2 of 32)	MIRb|SINE|MIR	21939	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
213346	chr7	135557451	135559450	+	0	NA	intron (NM_001329434, intron 1 of 42)	intron (NM_001329434, intron 1 of 42)	533	NM_015135	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
144717	chr20	36556301	36557130	+	0	NA	intron (NR_109939, intron 2 of 4)	intron (NR_109939, intron 2 of 4)	15196	NM_181526	10398		NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MMIHS4|MRLC1|MYRL2	myosin light chain 9	protein-coding
160075	chr3	18740421	18741800	+	0	NA	Intergenic	Intergenic	-295518	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
114467	chr19	12732071	12732230	+	0	NA	intron (NR_138095, intron 1 of 2)	AluSq2|SINE|Alu	2534	NM_001329738	79002		NM_024038	ENSG00000123144	TRIR	C19orf43|TERCIR|fSAP18	telomerase RNA component interacting RNase	protein-coding
80001	chr16	1911451	1911750	+	0	NA	exon (NM_001009606, exon 2 of 2)	exon (NM_001009606, exon 2 of 2)	6815	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
159696	chr3	15598171	15598330	+	0	NA	intron (NR_104315, intron 2 of 14)	AluSp|SINE|Alu	-3102	NM_001281723	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
119616	chr19	40775551	40776150	+	0	NA	non-coding (NR_037775, exon 2 of 10)	non-coding (NR_037775, exon 2 of 10)	313	NR_037775	100529262		NR_037775		MIA-RAB4B	RAB4B	MIA-RAB4B readthrough (NMD candidate)	ncRNA
100941	chr17	64482001	64482630	+	0	NA	intron (NM_007215, intron 6 of 7)	AluSz6|SINE|Alu	14739	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
22828	chr1	225396471	225396630	+	0	NA	intron (NM_001367479, intron 84 of 85)	intron (NM_001367479, intron 84 of 85)	31488	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
219110	chr8	65947471	65947830	+	0	NA	Intergenic	LTR16D|LTR|ERVL	-67328	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
118299	chr19	35403401	35403600	+	0	NA	Intergenic	LTR89|LTR|ERVL?	-2107	NR_040046	100128682		NR_040046	ENSG00000205786	LINC01531	-	long intergenic non-protein coding RNA 1531	ncRNA
158219	chr22	50268601	50268900	+	0	NA	intron (NM_002751, intron 1 of 11)	L2b|LINE|L2	1630	NM_002751	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
49781	chr12	31890101	31891300	+	0	NA	Intergenic	Intergenic	-3497	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
187472	chr5	142139251	142139750	+	0	NA	intron (NM_030571, intron 5 of 7)	MLT1L|LTR|ERVL-MaLR	30721	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
131401	chr2	96271001	96271600	+	0	NA	exon (NM_004804, exon 7 of 7)	exon (NM_004804, exon 7 of 7)	5075	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
58243	chr12	128748351	128748650	+	0	NA	Intergenic	AluSx4|SINE|Alu	75458	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
50820	chr12	49094521	49095300	+	0	NA	promoter-TSS (NM_021044)	promoter-TSS (NM_021044)	-109	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
232699	chr9	136542871	136543700	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	2763	NM_017617	4851		NM_017617	ENSG00000148400	NOTCH1	AOS5|AOVD1|TAN1|hN1	notch receptor 1	protein-coding
102697	chr17	76138601	76139000	+	0	NA	intron (NM_001454, intron 2 of 2)	intron (NM_001454, intron 2 of 2)	-1756	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
96074	chr17	39601201	39601430	+	0	NA	Intergenic	Intergenic	6605	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
62928	chr13	111183051	111183730	+	0	NA	intron (NM_001354057, intron 3 of 18)	intron (NM_001354057, intron 3 of 18)	-3404	NM_001113513	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
47430	chr12	3198201	3198730	+	0	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	121086	NM_006675	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
64313	chr14	23576071	23576500	+	0	NA	exon (NM_032452, exon 4 of 7)	exon (NM_032452, exon 4 of 7)	2505	NM_001146028	84502		NM_032452	ENSG00000092051	JPH4	JP4|JPHL1	junctophilin 4	protein-coding
162079	chr3	46880371	46880900	+	0	NA	intron (NM_000316, intron 1 of 15)	AluSz|SINE|Alu	-1614	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
222173	chr8	132978071	132978230	+	0	NA	intron (NM_003235, intron 34 of 47)	MSTB|LTR|ERVL-MaLR	68431	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
187104	chr5	140362071	140362480	+	0	NA	intron (NM_031467, intron 5 of 21)	intron (NM_031467, intron 5 of 21)	2081	NM_001258426	83697		NM_031467	ENSG00000113073	SLC4A9	AE4	solute carrier family 4 member 9	protein-coding
42543	chr11	71630151	71630250	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-47325	NM_001005405	440051		NM_001005405	ENSG00000204571	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
97484	chr17	43830621	43831080	+	0	NA	intron (NM_001353080, intron 6 of 20)	intron (NM_001353080, intron 6 of 20)	2296	NM_001932	4356		NM_001932	ENSG00000161647	MPP3	DLG3	MAGUK p55 scaffold protein 3	protein-coding
164220	chr3	56921851	56922730	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	-5854	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
159668	chr3	15377771	15378880	+	0	NA	Intergenic	MER66C|LTR|ERV1	-36945	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
87255	chr16	69773251	69773550	+	0	NA	intron (NM_001270455, intron 1 of 8)	AluSx1|SINE|Alu	11068	NM_001270454	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
138437	chr2	206064021	206064380	+	0	NA	intron (NM_017759, intron 1 of 10)	intron (NM_017759, intron 1 of 10)	21974	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
208439	chr7	66848401	66848880	+	0	NA	non-coding (NR_135738, exon 2 of 7)	non-coding (NR_135738, exon 2 of 7)	1190	NR_135738	101929580		NR_135738		GTF2IP23	-	general transcription factor IIi pseudogene 23	pseudo
119134	chr19	39371771	39372230	+	0	NA	intron (NM_001384588, intron 5 of 13)	intron (NM_001384588, intron 5 of 13)	19106	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
198558	chr6	106628851	106630480	+	0	NA	promoter-TSS (NM_018292)	promoter-TSS (NM_018292)	87	NM_018292	55278		NM_018292	ENSG00000130348	QRSL1	COXPD40|GatA	glutaminyl-tRNA amidotransferase subunit QRSL1	protein-coding
178321	chr4	145622851	145623150	+	0	NA	intron (NM_001375644, intron 1 of 6)	intron (NM_001375644, intron 1 of 6)	3615	NM_172250	166785		NM_172250	ENSG00000151611	MMAA	cblA	metabolism of cobalamin associated A	protein-coding
230695	chr9	128733301	128733700	+	0	NA	TTS (NR_046240)	TTS (NR_046240)	9038	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
89328	chr16	88740721	88741380	+	0	NA	non-coding (NR_103774, exon 3 of 3)	non-coding (NR_103774, exon 3 of 3)	-1717	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
157765	chr22	46732921	46733450	+	0	NA	intron (NM_022766, intron 1 of 12)	AluY|SINE|Alu	5067	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
227520	chr9	91415221	91415680	+	0	NA	intron (NM_001290000, intron 1 of 1)	MIRb|SINE|MIR	8382	NM_005384	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
8638	chr1	41727551	41727980	+	0	NA	intron (NM_024503, intron 1 of 8)	MIRc|SINE|MIR	191157	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
147495	chr20	59163251	59164370	+	0	NA	promoter-TSS (NM_178457)	promoter-TSS (NM_178457)	-11	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
138896	chr2	217902771	217902930	+	0	NA	intron (NM_022648, intron 4 of 32)	intron (NM_022648, intron 4 of 32)	-2222	NR_106867	102465485		NR_106867	ENSG00000275458	MIR6809	hsa-mir-6809	microRNA 6809	ncRNA
78304	chr15	90918101	90918380	+	0	NA	non-coding (NR_135502, exon 21 of 23)	non-coding (NR_135502, exon 21 of 23)	-11940	NM_001039675	55898		NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|OOHE|SMAP-1|SMAP1|UNC-45A	unc-45 myosin chaperone A	protein-coding
46808	chr11	130311151	130311450	+	0	NA	intron (NR_163264, intron 1 of 10)	AluJb|SINE|Alu	3412	NM_001301099	29068		NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
152	chr1	530701	530900	+	0	NA	Intergenic	Intergenic	-35355	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
66911	chr14	65301371	65302330	+	0	NA	Intergenic	Intergenic	33333	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
153051	chr22	23278051	23278150	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	15333	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
108108	chr18	62186451	62188550	+	0	NA	promoter-TSS (NM_012327)	promoter-TSS (NM_012327)	245	NR_144403	57614		NM_020854	ENSG00000134444	RELCH	HsT3308|HsT885|KIAA1468	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	protein-coding
105183	chr17	82290471	82290930	+	0	NA	non-coding (NR_135639, exon 2 of 2)	non-coding (NR_135639, exon 2 of 2)	2114	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
167177	chr3	128114001	128114750	+	0	NA	intron (NM_003707, intron 2 of 10)	intron (NM_003707, intron 2 of 10)	9437	NM_001319084	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
12138	chr1	100075121	100075680	+	0	NA	intron (NM_033055, intron 8 of 11)	intron (NM_033055, intron 8 of 11)	37305	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
145318	chr20	41075401	41076000	+	0	NA	intron (NM_003286, intron 3 of 20)	intron (NM_003286, intron 3 of 20)	46878	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
184761	chr5	109923471	109923630	+	0	NA	Intergenic	Intergenic	40368	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
211399	chr7	105029871	105030400	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	15930	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
37147	chr11	13549101	13549300	+	0	NA	Intergenic	L1PBa|LINE|L1	-53025	NM_001316352	5741		NM_000315	ENSG00000152266	PTH	FIH1|PTH1	parathyroid hormone	protein-coding
165964	chr3	107941951	107942530	+	0	NA	Intergenic	MIR3|SINE|MIR	59035	NR_015394	285205		NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
103823	chr17	79105121	79105580	+	0	NA	intron (NM_001082575, intron 6 of 14)	intron (NM_001082575, intron 6 of 14)	30526	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
190844	chr6	1610401	1611000	+	0	NA	exon (NM_001453, exon 1 of 1)	exon (NM_001453, exon 1 of 1)	785	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
216536	chr8	21102751	21102850	+	0	NA	Intergenic	Intergenic	128814	NR_033894	286114		NR_033894	ENSG00000253199	LINC02153	-	long intergenic non-protein coding RNA 2153	ncRNA
46101	chr11	122869851	122869950	+	0	NA	intron (NM_019604, intron 9 of 9)	Tigger9a|DNA|TcMar-Tigger	7569	NM_001304782	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
184490	chr5	100854221	100854680	+	0	NA	intron (NM_005668, intron 4 of 4)	AluY|SINE|Alu	-37885	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
11493	chr1	90834471	90834930	+	0	NA	intron (NR_147930, intron 1 of 1)	intron (NR_147930, intron 1 of 1)	1461	NR_147932	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
91670	chr17	5536421	5536680	+	0	NA	intron (NM_033006, intron 7 of 15)	AluSx3|SINE|Alu	-35544	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
114838	chr19	13829001	13829400	+	0	NA	intron (NM_023072, intron 12 of 12)	AluJr|SINE|Alu	7159	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
143050	chr20	21391571	21392200	+	0	NA	Intergenic	Intergenic	5641	NM_033176	644524		NM_033176	ENSG00000125816	NKX2-4	NKX2.4|NKX2D	NK2 homeobox 4	protein-coding
228045	chr9	96017121	96018000	+	0	NA	non-coding (NR_164677, exon 20 of 20)	non-coding (NR_164677, exon 20 of 20)	4251	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
104976	chr17	81987401	81987800	+	0	NA	intron (NR_045351, intron 3 of 14)	intron (NR_045351, intron 3 of 14)	9971	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
216811	chr8	22563151	22563850	+	0	NA	intron (NM_005775, intron 7 of 20)	intron (NM_005775, intron 7 of 20)	-2229	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
186943	chr5	139646821	139647330	+	0	NA	promoter-TSS (NM_001317201)	promoter-TSS (NM_001317201)	-224	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
161621	chr3	43243771	43244330	+	0	NA	Intergenic	Intergenic	-42462	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
13351	chr1	113858351	113858650	+	0	NA	exon (NM_001193431, exon 4 of 21)	exon (NM_001193431, exon 4 of 21)	1865	NR_037864	100287722		NR_037864	ENSG00000226167	AP4B1-AS1	-	AP4B1 antisense RNA 1	ncRNA
12831	chr1	110040821	110041280	+	0	NA	intron (NR_073071, intron 7 of 21)	intron (NR_073071, intron 7 of 21)	6426	NM_033088	85369		NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
235114	chrX	40651621	40652030	+	0	NA	exon (NM_004229, exon 31 of 31)	exon (NM_004229, exon 31 of 31)	-4264	NM_001330455	159013		NM_144970	ENSG00000185753	CXorf38	-	chromosome X open reading frame 38	protein-coding
141303	chr2	240439321	240439580	+	0	NA	intron (NM_002081, intron 1 of 8)	intron (NM_002081, intron 1 of 8)	3787	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
20657	chr1	200141101	200141300	+	0	NA	intron (NM_205860, intron 7 of 7)	L1MD2|LINE|L1	98375	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
29548	chr10	71303251	71303550	+	0	NA	TTS (NM_001244889)	TTS (NM_001244889)	-15853	NR_033413	55315		NM_018344	ENSG00000198246	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 member 3	protein-coding
99124	chr17	49224111	49226200	+	0	NA	intron (NM_001143804, intron 2 of 2)	intron (NM_001143804, intron 2 of 2)	5611	NM_001143804	162466		NM_178500	ENSG00000173868	PHOSPHO1	-	phosphoethanolamine/phosphocholine phosphatase 1	protein-coding
72890	chr15	40322951	40325200	+	0	NA	exon (NM_001301268, exon 1 of 1)	exon (NM_001301268, exon 1 of 1)	383	NM_001301268	100505573		NM_001301268	ENSG00000259330	INAFM2	LINC00984|OGU1	InaF motif containing 2	protein-coding
50738	chr12	48989401	48989600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8847	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
115959	chr19	16877151	16877450	+	0	NA	intron (NM_001297595, intron 16 of 18)	MLT1C|LTR|ERVL-MaLR	-11699	NM_003950	9002		NM_003950	ENSG00000127533	F2RL3	PAR4	F2R like thrombin or trypsin receptor 3	protein-coding
80873	chr16	3585501	3586130	+	0	NA	intron (NM_032444, intron 12 of 14)	AluJb|SINE|Alu	-8412	NR_075083	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
51036	chr12	49762501	49763580	+	0	NA	3' UTR (NM_003217, exon 10 of 10)	3' UTR (NM_003217, exon 10 of 10)	21231	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
143444	chr20	30292901	30293100	+	0	NA	Intergenic	Intergenic	-6463	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
206886	chr7	37686671	37686830	+	0	NA	intron (NM_001381946, intron 2 of 2)	intron (NM_001381946, intron 2 of 2)	2984	NM_001329994	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
31061	chr10	88989651	88991100	+	0	NA	promoter-TSS (NR_028036)	promoter-TSS (NR_028036)	-423	NR_028035	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
35069	chr11	607271	608550	+	0	NA	exon (NM_001286581, exon 14 of 18).2	exon (NM_001286581, exon 14 of 18).2	8040	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
152565	chr22	21047471	21048130	+	0	NA	intron (NR_110991, intron 2 of 8)	L2b|LINE|L2	1854	NR_027006	400891		NM_001013675	ENSG00000187905	LRRC74B	-	leucine rich repeat containing 74B	protein-coding
134222	chr2	134706351	134707350	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	12150	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
222720	chr8	141334671	141334830	+	0	NA	Intergenic	Intergenic	-5799	NR_024441	731779		NR_024441	ENSG00000253595	LINC01300	-	long intergenic non-protein coding RNA 1300	ncRNA
104588	chr17	81393321	81394130	+	0	NA	Intergenic	CpG	-1732	NM_001377448	57597		NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
22730	chr1	224245121	224245600	+	0	NA	intron (NM_206840, intron 18 of 21)	intron (NM_206840, intron 18 of 21)	11750	NR_031574	100313769		NR_031574		MIR320B2	MIR320B-2|MIRN320B2|mir-320b-2	microRNA 320b-2	ncRNA
182839	chr5	69332051	69333130	+	0	NA	intron (NM_001297696, intron 1 of 10)	intron (NM_001297696, intron 1 of 10)	203	NM_001297697	202243		NM_176816	ENSG00000183323	CCDC125	KENAE	coiled-coil domain containing 125	protein-coding
72865	chr15	40273571	40274030	+	0	NA	intron (NM_001276718, intron 9 of 9)	intron (NM_001276718, intron 9 of 9)	8786	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
216317	chr8	12751721	12751980	+	0	NA	intron (NM_001329976, intron 1 of 11).2	intron (NM_001329976, intron 1 of 11).2	3676	NR_138255	91694		NM_152271	ENSG00000154359	LONRF1	RNF191	LON peptidase N-terminal domain and ring finger 1	protein-coding
103241	chr17	77507901	77508100	+	0	NA	Intergenic	Intergenic	-19001	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
115609	chr19	16070021	16071450	+	0	NA	intron (NM_001367836, intron 1 of 8)	intron (NM_001367836, intron 1 of 8)	3197	NM_001367836	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
213379	chr7	135957871	135958230	+	0	NA	intron (NM_001128619, intron 1 of 3)	intron (NM_001128619, intron 1 of 3)	19309	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
37349	chr11	14905101	14906500	+	0	NA	Intergenic	CpG	-13569	NM_024514	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
74580	chr15	60553651	60554200	+	0	NA	intron (NM_134261, intron 2 of 10)	MER34A|LTR|ERV1	38601	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
204924	chr7	6167001	6167200	+	0	NA	intron (NM_004227, intron 9 of 12)	intron (NM_004227, intron 9 of 12)	5037	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
139185	chr2	219221771	219222450	+	0	NA	exon (NM_001077198, exon 13 of 16)	exon (NM_001077198, exon 13 of 16)	-3152	NM_001349828	10058		NM_005689	ENSG00000115657	ABCB6	ABC|LAN|MTABC3|PRP|umat	ATP binding cassette subfamily B member 6 (LAN blood group)	protein-coding
28905	chr10	63130851	63131800	+	0	NA	Intergenic	LTR17|LTR|ERV1	-1922	NM_001282405	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
180769	chr5	32162801	32163530	+	0	NA	intron (NM_022130, intron 1 of 3)	MIRc|SINE|MIR	11154	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
67897	chr14	74514601	74515130	+	0	NA	intron (NM_000428, intron 18 of 35)	intron (NM_000428, intron 18 of 35)	21100	NM_194279	122961		NM_194279	ENSG00000165898	ISCA2	HBLD1|ISA2|MMDS4|c14_5557	iron-sulfur cluster assembly 2	protein-coding
61944	chr13	78649951	78650930	+	0	NA	intron (NM_024546, intron 1 of 5)	L2|LINE|L2	8715	NM_024546	79596		NM_024546	ENSG00000152193	OBI1	C13orf7|RNF219	ORC ubiquitin ligase 1	protein-coding
24012	chr1	235258151	235258450	+	0	NA	intron (NM_016374, intron 3 of 23)	AluSx|SINE|Alu	-68184	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
50569	chr12	48186151	48186850	+	0	NA	TTS (NM_001013635)	TTS (NM_001013635)	2856	NM_001013635	387856		NM_001013635	ENSG00000177875	CCDC184	C12orf68	coiled-coil domain containing 184	protein-coding
90916	chr17	2591721	2591980	+	0	NA	Intergenic	AluJb|SINE|Alu	-1804	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
207118	chr7	42236351	42237400	+	0	NA	intron (NM_000168, intron 1 of 14)	CpG	334	NM_000168	2737		NM_000168	ENSG00000106571	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
185437	chr5	131212571	131212730	+	0	NA	Intergenic	Intergenic	41706	NM_001293735	90624		NM_181705	ENSG00000186687	LYRM7	C5orf31|MC3DN8|MZM1L	LYR motif containing 7	protein-coding
214208	chr7	148700801	148701430	+	0	NA	intron (NM_001370664, intron 1 of 21)	intron (NM_001370664, intron 1 of 21)	1405	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
95860	chr17	38843371	38844580	+	0	NA	Intergenic	AluSp|SINE|Alu	-2537	NM_001080465	388381		NM_001080465	ENSG00000275489	SPMAP1	C17orf98	sperm microtubule associated protein 1	protein-coding
225332	chr9	34625621	34626500	+	0	NA	intron (NM_001017363, intron 1 of 6)	intron (NM_001017363, intron 1 of 6)	2026	NM_001017363	138715		NM_001017363	ENSG00000205143	ARID3C	-	AT-rich interaction domain 3C	protein-coding
55743	chr12	108339151	108340050	+	0	NA	promoter-TSS (NM_001142343)	promoter-TSS (NM_001142343)	-289	NM_004072	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
152472	chr22	20731751	20732050	+	0	NA	intron (NM_001362863, intron 35 of 53)	AluY|SINE|Alu	30786	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
185896	chr5	132755071	132755230	+	0	NA	TTS (NM_001098813)	TTS (NM_001098813)	7705	NM_001287252	645121		NM_001039780	ENSG00000205089	CCNI2	-	cyclin I family member 2	protein-coding
205260	chr7	8133421	8133680	+	0	NA	intron (NR_146926, intron 12 of 13)	MSTC|LTR|ERVL-MaLR	128617	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
199423	chr6	116690801	116691000	+	0	NA	intron (NM_001366306, intron 2 of 13)	MER2|DNA|TcMar-Tigger	9689	NM_001366305	3841		NM_002269	ENSG00000196911	KPNA5	IPOA6|SRP6	karyopherin subunit alpha 5	protein-coding
215052	chr7	152675401	152676900	+	0	NA	promoter-TSS (NM_005431)	promoter-TSS (NM_005431)	-9	NM_005431	7516		NM_005431	ENSG00000196584	XRCC2	FANCU|POF17|SPGF50	X-ray repair cross complementing 2	protein-coding
95895	chr17	38887451	38888280	+	0	NA	intron (NM_001271608, intron 2 of 5)	intron (NM_001271608, intron 2 of 5)	17807	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
191432	chr6	10510551	10510850	+	0	NA	Intergenic	Intergenic	-10651	NM_145649	2651		NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein-coding
91409	chr17	4700571	4700930	+	0	NA	intron (NM_001278241, intron 1 of 18)	AluJb|SINE|Alu	3387	NM_001278241	27043		NM_014389	ENSG00000141456	PELP1	MNAR|P160	proline, glutamate and leucine rich protein 1	protein-coding
95401	chr17	35975671	35976250	+	0	NA	TTS (NM_004590)	TTS (NM_004590)	5537	NM_004590	6360		NM_004590	ENSG00000275152	CCL16	CKb12|HCC-4|ILINCK|LCC-1|LEC|LMC|Mtn-1|NCC-4|NCC4|SCYA16|SCYL4	C-C motif chemokine ligand 16	protein-coding
178827	chr4	153570471	153571250	+	0	NA	intron (NM_015196, intron 7 of 34)	intron (NM_015196, intron 7 of 34)	-69308	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
87775	chr16	75379951	75381050	+	0	NA	intron (NM_006324, intron 5 of 6)	L1MEd|LINE|L1	53003	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
3568	chr1	16165401	16166800	+	0	NA	Intergenic	Intergenic	-10031	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
20912	chr1	202175651	202175750	+	0	NA	intron (NR_002930, intron 6 of 21)	intron (NR_002930, intron 6 of 21)	7649	NR_002930	148713		NR_002930	ENSG00000293457	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase receptor type V, pseudogene	pseudo
132018	chr2	100652551	100652850	+	0	NA	Intergenic	MER53|DNA|hAT	48961	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
123416	chr19	54089701	54090150	+	0	NA	Intergenic	AluSx|SINE|Alu	-8560	NM_001135686	441864		NM_001135686	ENSG00000248385	TARM1	OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding
87614	chr16	74370101	74371030	+	0	NA	Intergenic	AluSg|SINE|Alu	-2310	NR_026950	283922		NR_026950	ENSG00000290890	PDPR2P	-	pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene	pseudo
219363	chr8	70366771	70367000	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	36505	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
232970	chr9	136968021	136968650	+	0	NA	Intergenic	Intergenic	-1077	NR_157392	101928638		NM_001101674		LINC02692	C9orf141|PRR31	long intergenic non-protein coding RNA 2692	ncRNA
94016	chr17	26937351	26937450	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	151841	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
18596	chr1	165601571	165602000	+	0	NA	Intergenic	Intergenic	-19630	NR_026744	400794		NR_026744	ENSG00000237463	LRRC52-AS1	-	LRRC52 antisense RNA 1	ncRNA
226250	chr9	67712521	67713130	+	0	NA	intron (NR_121606, intron 2 of 2).2	intron (NR_121606, intron 2 of 2).2	1148	NR_121606	102723709		NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
40378	chr11	63997251	63997930	+	0	NA	TTS (NM_014067)	TTS (NM_014067)	11737	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
185868	chr5	132607171	132607350	+	0	NA	intron (NM_005732, intron 16 of 24)	L3|LINE|CR1	34530	NR_132124	101927761		NR_132124	ENSG00000223442	TH2LCRR	TH2-LCR	T helper type 2 locus control region associated RNA	ncRNA
109681	chr19	1034451	1034630	+	0	NA	intron (NM_201277, intron 4 of 5)	CpG	-5567	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
234947	chrX	38804711	38805140	+	0	NA	5' UTR (NM_001098791, exon 2 of 2)	5' UTR (NM_001098791, exon 2 of 2)	-1042	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
104949	chr17	81953401	81953700	+	0	NA	intron (NM_178493, intron 10 of 10)	AluSx|SINE|Alu	-6317	NM_001145113	255275		NM_001145113	ENSG00000185105	MYADML2	-	myeloid associated differentiation marker like 2	protein-coding
3001	chr1	12051801	12052600	+	0	NA	Intergenic	Intergenic	-11103	NM_001243	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
60812	chr13	45343101	45343450	+	0	NA	intron (NR_024458, intron 1 of 10)	AluSx1|SINE|Alu	1930	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
177020	chr4	106369471	106369650	+	0	NA	promoter-TSS (NM_001195138)	promoter-TSS (NM_001195138)	-782	NM_001195138	100507096		NM_001195138	ENSG00000250298	GIMD1	-	GIMAP family P-loop NTPase domain containing 1	protein-coding
165132	chr3	71726101	71726930	+	0	NA	intron (NM_173359, intron 2 of 7)	intron (NM_173359, intron 2 of 7)	-1113	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
48644	chr12	10405101	10405830	+	0	NA	intron (NM_001199805, intron 4 of 12)	MER44B|DNA|TcMar-Tigger	4292	NM_013431	8302		NM_013431	ENSG00000183542	KLRC4	NKG2-F|NKG2F	killer cell lectin like receptor C4	protein-coding
5551	chr1	25878201	25878480	+	0	NA	Intergenic	AluSc|SINE|Alu	-2632	NM_178422	164091		NM_178422	ENSG00000182749	PAQR7	MPRA|PGLP|mSR	progestin and adipoQ receptor family member 7	protein-coding
147213	chr20	57384801	57385730	+	0	NA	intron (NR_149006, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	-6131	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
219069	chr8	65819951	65820250	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	21964	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
178545	chr4	151101251	151101350	+	0	NA	promoter-TSS (NR_145963)	promoter-TSS (NR_145963)	-757	NR_145963	114655		NR_145963	ENSG00000201264	SNORD73B	RNU73B|U73B	small nucleolar RNA, C/D box U73B	snoRNA
188130	chr5	150395071	150395650	+	0	NA	intron (NM_001371623, intron 23 of 26)	intron (NM_001371623, intron 23 of 26)	17396	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
152104	chr22	19885171	19885730	+	0	NA	intron (NR_147957, intron 10 of 16)	intron (NR_147957, intron 10 of 16)	-30576	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
176356	chr4	88456301	88457610	+	0	NA	promoter-TSS (NM_016323)	promoter-TSS (NM_016323)	-164	NM_016323	51191		NM_016323	ENSG00000138646	HERC5	CEB1|CEBP1	HECT and RLD domain containing E3 ubiquitin protein ligase 5	protein-coding
147982	chr20	62998321	62998580	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	8514	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
115731	chr19	16258251	16258830	+	0	NA	Intergenic	Intergenic	60629	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
11075	chr1	85229871	85230030	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-28934	NM_032184	84144		NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
116287	chr19	17747351	17748780	+	0	NA	intron (NR_169231, intron 1 of 25)	CpG	321	NR_169240	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
237481	chrX	119790171	119790350	+	0	NA	intron (NM_001000, intron 1 of 2)	MIRb|SINE|MIR	1370	NM_001000	6170		NM_001000	ENSG00000198918	RPL39	L39|RPL39P42|RPL39_23_1806|eL39	ribosomal protein L39	protein-coding
140681	chr2	234135751	234136730	+	0	NA	Intergenic	Intergenic	85538	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
34497	chr10	132549321	132549780	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	11763	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
173480	chr4	9151001	9151200	+	0	NA	Intergenic	Intergenic	-22073	NM_001358418	100287045		NM_001358418	ENSG00000229924	FAM90A26	FAM90A26P	family with sequence similarity 90 member A26	protein-coding
69638	chr14	97726451	97726950	+	0	NA	Intergenic	Intergenic	36131	NR_146447	100132612		NR_146447	ENSG00000258869	LINC02312	-	long intergenic non-protein coding RNA 2312	ncRNA
16710	chr1	155233321	155233580	+	0	NA	Intergenic	Intergenic	-5916	NR_002188	2630		NR_002188	ENSG00000291137	GBA1LP	Beta-GC|GBA|GBAP|GBAP1|GC|GLUC	glucosylceramidase beta 1 like, pseudogene	pseudo
3491	chr1	16022601	16022800	+	0	NA	exon (NM_001042704, exon 2 of 20)	exon (NM_001042704, exon 2 of 20)	664	NM_001257139	1187		NM_004070	ENSG00000186510	CLCNKA	CLCK1|ClC-K1|hClC-Ka	chloride voltage-gated channel Ka	protein-coding
125933	chr2	25161021	25161850	+	0	NA	exon (NM_001319205, exon 3 of 3)	exon (NM_001319205, exon 3 of 3)	7145	NM_000939	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
68805	chr14	91247701	91248400	+	0	NA	intron (NM_001348437, intron 1 of 2)	AluJb|SINE|Alu	-3346	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
88387	chr16	84613051	84614000	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	4553	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
68491	chr14	88025021	88025280	+	0	NA	intron (NR_046094, intron 1 of 3)	LTR5B|LTR|ERVK	600	NR_046094	283587		NR_046094	ENSG00000258867	HISLA	LINC01146	HIF1A stabilizing long noncoding RNA	ncRNA
43934	chr11	93234601	93235000	+	0	NA	Intergenic	Intergenic	-36809	NM_152313	120103		NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
27997	chr10	43136571	43136730	+	0	NA	Intergenic	MER89-int|LTR|ERV1	-1795	NR_135077	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
227871	chr9	93671371	93671530	+	0	NA	intron (NM_005392, intron 17 of 21)	intron (NM_005392, intron 17 of 21)	76609	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
21844	chr1	207361301	207361500	+	0	NA	TTS (NM_001300903)	TTS (NM_001300903)	39722	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
204042	chr7	1938521	1939700	+	0	NA	intron (NM_001304524, intron 14 of 16)	CpG	1461	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
180835	chr5	32537121	32538480	+	0	NA	Intergenic	AluSz|SINE|Alu	-47757	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
2741	chr1	10670401	10670830	+	0	NA	intron (NM_017766, intron 4 of 15)	L2b|LINE|L2	126031	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
216084	chr8	10927951	10928850	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	88374	NR_125432	101929229		NR_125432		PINX1-DT	-	PINX1 divergent transcript	ncRNA
70453	chr14	102053371	102054250	+	0	NA	3' UTR (NM_001376, exon 78 of 78)	3' UTR (NM_001376, exon 78 of 78)	33234	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
150569	chr21	43117271	43117430	+	0	NA	Intergenic	LTR13|LTR|ERVK	-9744	NM_001320651	102724594		NM_001320646	ENSG00000275895	LOC102724594	U2AF1L5	U2 small nuclear RNA auxiliary factor 1 like 5	protein-coding
206507	chr7	33702721	33703180	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-23031	NR_165282	55025		NM_017937	ENSG00000173862	FLJ20712	-	uncharacterized FLJ20712	ncRNA
148833	chr21	8393801	8394700	+	0	NA	non-coding (NR_003286, exon 1 of 1).2	non-coding (NR_003286, exon 1 of 1).2	-1356	NR_145821	106632260		NR_145821	ENSG00000278189	RNA5-8SN1	RNA5-8S4	RNA, 5.8S ribosomal N1	rRNA
136509	chr2	177242401	177242600	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	13510	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
93980	chr17	21973551	21973930	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-229255	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
38626	chr11	46345971	46346500	+	0	NA	intron (NM_201533, intron 1 of 30)	intron (NM_201533, intron 1 of 30)	968	NM_201533	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
162046	chr3	46704421	46705700	+	0	NA	intron (NM_147196, intron 1 of 3)	intron (NM_147196, intron 1 of 3)	3668	NM_147196	259236		NM_147196	ENSG00000181585	TMIE	DFNB6	transmembrane inner ear	protein-coding
35603	chr11	1755751	1756430	+	0	NA	intron (NM_001909, intron 5 of 8)	intron (NM_001909, intron 5 of 8)	-5495	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
64235	chr14	23089821	23090080	+	0	NA	intron (NM_001164815, intron 3 of 17)	intron (NM_001164815, intron 3 of 17)	-5555	NM_017924	55017		NM_017924	ENSG00000179933	C14orf119	-	chromosome 14 open reading frame 119	protein-coding
233021	chr9	137020271	137020800	+	0	NA	intron (NM_212533, intron 9 of 48)	CpG-29180	-6929	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
89098	chr16	88485971	88486500	+	0	NA	intron (NM_153813, intron 2 of 9)	intron (NM_153813, intron 2 of 9)	17317	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
119962	chr19	41888851	41889480	+	0	NA	intron (NM_198977, intron 4 of 27)	intron (NM_198977, intron 4 of 27)	4722	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
40667	chr11	64751551	64751650	+	0	NA	exon (NM_005609, exon 15 of 20)	exon (NM_005609, exon 15 of 20)	-6144	NM_153819	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
182765	chr5	68301151	68301450	+	0	NA	3' UTR (NM_181504, exon 10 of 10)	3' UTR (NM_181504, exon 10 of 10)	8723	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
213073	chr7	131081701	131083480	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	24440	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
187	chr1	683151	683250	+	0	NA	Intergenic	L1MA7|LINE|L1	3454	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
204199	chr7	2501751	2502880	+	0	NA	Intergenic	Intergenic	-10214	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
150680	chr21	43645621	43645980	+	0	NA	intron (NM_007031, intron 3 of 8)	intron (NM_007031, intron 3 of 8)	13688	NM_007031	11077		NM_007031	ENSG00000160207	HSF2BP	MEILB2|POF19	heat shock transcription factor 2 binding protein	protein-coding
134197	chr2	134410001	134410480	+	0	NA	intron (NM_001371457, intron 12 of 16)	intron (NM_001371457, intron 12 of 16)	156168	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
225230	chr9	34193121	34194480	+	0	NA	intron (NM_001171201, intron 1 of 5)	MER21A|LTR|ERVL	14757	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
54905	chr12	96047471	96048050	+	0	NA	Intergenic	Intergenic	-4240	NM_001256643	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
64153	chr14	22900051	22900950	+	0	NA	3' UTR (NM_001077352, exon 12 of 12)	3' UTR (NM_001077352, exon 12 of 12)	17278	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
124406	chr19	58411901	58412100	+	0	NA	intron (NM_173548, intron 2 of 3)	AluSx|SINE|Alu	3326	NR_134461	201514		NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
167742	chr3	131526971	131527130	+	0	NA	Intergenic	CpG	-24079	NM_007208	11222		NM_007208	ENSG00000114686	MRPL3	COXPD9|MRL3|RPML3|uL3m	mitochondrial ribosomal protein L3	protein-coding
102374	chr17	75532201	75532730	+	0	NA	intron (NM_004524, intron 1 of 24)	AluSx|SINE|Alu	6763	NM_001015002	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
96192	chr17	39750401	39750600	+	0	NA	Intergenic	Intergenic	10533	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
4565	chr1	22054571	22054730	+	0	NA	intron (NM_044472, intron 1 of 5)	intron (NM_044472, intron 1 of 5)	1941	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
205362	chr7	13849001	13849300	+	0	NA	Intergenic	Intergenic	137364	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
208125	chr7	59734751	59734850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2284623	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
77766	chr15	85792251	85792550	+	0	NA	intron (NM_022480, intron 1 of 2)	intron (NM_022480, intron 1 of 2)	2525	NM_022480	64410		NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch like family member 25	protein-coding
73564	chr15	44425451	44425550	+	0	NA	Intergenic	Intergenic	-2129	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
95300	chr17	35537501	35538250	+	0	NA	promoter-TSS (NM_001363830)	promoter-TSS (NM_001363830)	-14	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
58012	chr12	124387871	124388030	+	0	NA	intron (NM_001077261, intron 18 of 47)	intron (NM_001077261, intron 18 of 47)	-50708	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
166152	chr3	111577701	111578230	+	0	NA	intron (NM_198196, intron 4 of 14)	MER5B|DNA|hAT-Charlie	17381	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
59597	chr13	27619801	27621000	+	0	NA	promoter-TSS (NM_001206559)	promoter-TSS (NM_001206559)	129	NM_153371	222484		NM_153371	ENSG00000139517	LNX2	PDZRN1	ligand of numb-protein X 2	protein-coding
210692	chr7	100572121	100572730	+	0	NA	exon (NM_001348680, exon 6 of 6)	exon (NM_001348680, exon 6 of 6)	1475	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
117141	chr19	19300771	19301130	+	0	NA	intron (NM_172231, intron 7 of 13)	intron (NM_172231, intron 7 of 13)	19559	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
176864	chr4	102616001	102616900	+	0	NA	exon (NM_003998, exon 24 of 24)	exon (NM_003998, exon 24 of 24)	-113964	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
175336	chr4	68373551	68374000	+	0	NA	Intergenic	Intergenic	-23685	NM_001031732	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
227793	chr9	93137601	93137900	+	0	NA	Intergenic	Intergenic	-3499	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
209053	chr7	74684571	74685130	+	0	NA	intron (NM_001163636, intron 1 of 33)	intron (NM_001163636, intron 1 of 33)	27132	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
195705	chr6	38713651	38714550	+	0	NA	Intergenic	Intergenic	-1211	NM_001371	1769		NM_001371	ENSG00000124721	DNAH8	ATPase|SPGF46|hdhc9	dynein axonemal heavy chain 8	protein-coding
116751	chr19	18479821	18480180	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	-41867	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
213218	chr7	133252721	133254030	+	0	NA	intron (NM_021807, intron 1 of 17)	intron (NM_021807, intron 1 of 17)	297	NM_021807	60412		NM_021807	ENSG00000131558	EXOC4	SEC8|SEC8L1|Sec8p	exocyst complex component 4	protein-coding
126704	chr2	30162171	30163900	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	16028	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
14377	chr1	144149901	144150200	+	0	NA	Intergenic	REP522|Satellite|telo	98155	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
160466	chr3	30434851	30435150	+	0	NA	Intergenic	MLT1H2-int|LTR|ERVL-MaLR	-83868	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
192808	chr6	26607421	26607880	+	0	NA	Intergenic	Intergenic	10697	NM_013375	29777		NM_013375	ENSG00000146109	ABT1	Esf2|hABT1	activator of basal transcription 1	protein-coding
225384	chr9	35034271	35034630	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6645	NM_001040411	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
26196	chr10	14550471	14551250	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	-2223	NM_001320739	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
50005	chr12	42325751	42327700	+	0	NA	promoter-TSS (NM_033114)	promoter-TSS (NM_033114)	558	NM_001364827	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
87880	chr16	78159421	78159680	+	0	NA	intron (NM_130791, intron 4 of 5)	L1MB1|LINE|L1	59896	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19290	chr1	172827951	172828250	+	0	NA	Intergenic	L2c|LINE|L2	168997	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
126953	chr2	34096651	34096830	+	0	NA	intron (NR_126403, intron 4 of 5)	L2a|LINE|L2	29514	NR_132381	106144585		NR_132381	ENSG00000237790	LINC01318	-	long intergenic non-protein coding RNA 1318	ncRNA
6197	chr1	27455301	27455800	+	0	NA	intron (NM_006990, intron 1 of 8)	L2c|LINE|L2	34617	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
198414	chr6	105993951	105995300	+	0	NA	Intergenic	CpG	-91711	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
14668	chr1	145815271	145815650	+	0	NA	intron (NM_014455, intron 1 of 8)	intron (NM_014455, intron 1 of 8)	8635	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
13818	chr1	117616771	117617400	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	11037	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
217991	chr8	38383001	38383980	+	0	NA	Intergenic	Intergenic	-1218	NM_017778	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
97658	chr17	44207171	44207330	+	0	NA	TTS (NR_106840)	TTS (NR_106840)	589	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
179889	chr5	665071	665230	+	0	NA	exon (NM_007030, exon 4 of 4)	exon (NM_007030, exon 4 of 4)	28202	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
134320	chr2	136054851	136055350	+	0	NA	Intergenic	Intergenic	61135	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
1023	chr1	1866751	1867600	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSq|SINE|Alu	23912	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
82876	chr16	21543671	21543830	+	0	NA	Intergenic	Intergenic	-23306	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
13111	chr1	111627771	111628180	+	0	NA	intron (NM_001010935, intron 2 of 8)	MIRb|SINE|MIR	-7577	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
162797	chr3	49103171	49103330	+	0	NA	intron (NM_001272073, intron 5 of 23)	AluJr|SINE|Alu	1507	NR_073590	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
191484	chr6	11209901	11210280	+	0	NA	intron (NM_182966, intron 2 of 2)	intron (NM_182966, intron 2 of 2)	22578	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
200820	chr6	137946051	137946350	+	0	NA	promoter-TSS (NR_149097)	promoter-TSS (NR_149097)	-400	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
19265	chr1	172702221	172702680	+	0	NA	Intergenic	L2a|LINE|L2	43347	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
147078	chr20	53827151	53827250	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	48509	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
35505	chr11	1538901	1539300	+	0	NA	Intergenic	Intergenic	33171	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
71333	chr14	105418001	105418200	+	0	NA	non-coding (NR_125384, exon 3 of 3)	non-coding (NR_125384, exon 3 of 3)	1639	NR_125384	100507437		NR_125384	ENSG00000251602	MTA1-DT	-	MTA1 divergent transcript	ncRNA
126603	chr2	28783301	28783850	+	0	NA	intron (NM_206876, intron 5 of 8)	AluSx3|SINE|Alu	-27259	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
92913	chr17	16520921	16521650	+	0	NA	Intergenic	Intergenic	-29092	NM_207387	388341		NM_207387	ENSG00000181350	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
132540	chr2	106175751	106176050	+	0	NA	intron (NR_165308, intron 1 of 14)	MLT1G|LTR|ERVL-MaLR	-15263	NM_001377509	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
227694	chr9	93015821	93016380	+	0	NA	intron (NM_001369951, intron 10 of 17)	intron (NM_001369951, intron 10 of 17)	-1156	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
94328	chr17	28789571	28789730	+	0	NA	intron (NM_001288636, intron 3 of 5)	L1MC4|LINE|L1	22821	NM_001288634	55731		NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding
72305	chr15	31200651	31201330	+	0	NA	Intergenic	Intergenic	-15031	NR_135834	102725022		NR_135834		LINC02352	-	long intergenic non-protein coding RNA 2352	ncRNA
172399	chr4	1785401	1785800	+	0	NA	Intergenic	Intergenic	-7693	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
72456	chr15	32358421	32358800	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	-15933	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
116939	chr19	18845051	18845680	+	0	NA	intron (NM_001297549, intron 1 of 23)	intron (NM_001297549, intron 1 of 23)	13406	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
29376	chr10	69958301	69958530	+	0	NA	intron (NM_001368884, intron 36 of 36)	intron (NM_001368884, intron 36 of 36)	-94431	NM_018649	55506		NM_018649	ENSG00000099284	MACROH2A2	H2AFY2	macroH2A.2 histone	protein-coding
156626	chr22	41593571	41594300	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4095	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
26358	chr10	15856501	15856850	+	0	NA	intron (NM_001318330, intron 1 of 13)	intron (NM_001318330, intron 1 of 13)	3832	NM_024948	80013		NM_024948	ENSG00000148481	MINDY3	C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042	MINDY lysine 48 deubiquitinase 3	protein-coding
68365	chr14	77739671	77740130	+	0	NA	intron (NM_001318844, intron 3 of 12)	AluY|SINE|Alu	-20868	NR_161324	283579		NM_174943	ENSG00000197734	C14orf178	-	chromosome 14 open reading frame 178	ncRNA
165184	chr3	72442601	72443250	+	0	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	3698	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
90064	chr16	89964201	89964400	+	0	NA	exon (NM_001242816, exon 11 of 13)	exon (NM_001242816, exon 11 of 13)	-8280	NR_003228	172		NM_001132	ENSG00000293510	AFG3L1P	AFG3|AFG3L1	AFG3 like matrix AAA peptidase subunit 1, pseudogene	pseudo
204579	chr7	5286771	5287280	+	0	NA	intron (NM_153247, intron 1 of 10)	L2|LINE|L2	4082	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
134577	chr2	144237901	144238350	+	0	NA	promoter-TSS (NM_024659)	promoter-TSS (NM_024659)	-786	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
105963	chr18	5106851	5106970	+	0	NA	Intergenic	Intergenic	25728	NR_146900	105371969		NR_146900	ENSG00000265514	LINC01892	-	long intergenic non-protein coding RNA 1892	ncRNA
172093	chr4	1050621	1050880	+	0	NA	Intergenic	CpG	38286	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
163824	chr3	52449601	52449830	+	0	NA	Intergenic	AluY|SINE|Alu	4326	NM_003280	7134		NM_003280	ENSG00000114854	TNNC1	CMD1Z|CMH13|TN-C|TNC|TNNC	troponin C1, slow skeletal and cardiac type	protein-coding
93145	chr17	17747221	17747680	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	18852	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
218673	chr8	58151901	58152100	+	0	NA	Intergenic	Intergenic	81792	NM_001377998	90362		NM_147189	ENSG00000169122	FAM110B	C8orf72	family with sequence similarity 110 member B	protein-coding
113388	chr19	9141651	9141950	+	0	NA	intron (NM_001190791, intron 1 of 5)	AluSq2|SINE|Alu	1403	NR_102435	57693		NM_020933	ENSG00000130803	ZNF317	-	zinc finger protein 317	protein-coding
2187	chr1	8532921	8533450	+	0	NA	intron (NM_012102, intron 8 of 23)	MLT1J|LTR|ERVL-MaLR	-38272	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
112221	chr19	5703101	5704000	+	0	NA	intron (NR_076392, intron 9 of 18)	intron (NR_076392, intron 9 of 18)	13255	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
57251	chr12	121573121	121573580	+	0	NA	intron (NM_001005366, intron 4 of 22)	AluJb|SINE|Alu	6896	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
132273	chr2	104851451	104851750	+	0	NA	promoter-TSS (NR_131235)	promoter-TSS (NR_131235)	-124	NR_037883	100506421		NR_037883	ENSG00000233639	PANTR1	LINC01158|linc-Brn1a|linc-POU3F3	POU3F3 adjacent non-coding transcript 1	ncRNA
76050	chr15	72305571	72305730	+	0	NA	intron (NM_052840, intron 2 of 12)	L2|LINE|L2	665	NM_001172685	60677		NM_052840	ENSG00000140488	CELF6	BRUNOL6	CUGBP Elav-like family member 6	protein-coding
147934	chr20	62925581	62927450	+	0	NA	promoter-TSS (NM_001193370)	promoter-TSS (NM_001193370)	-10	NM_001193369	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
219445	chr8	72944001	72944230	+	0	NA	Intergenic	Intergenic	-64749	NM_003218	7013		NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding
180228	chr5	1539371	1540530	+	0	NA	Intergenic	(GGCCACACAG)n|Simple_repeat|Simple_repeat	-15990	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
238621	chrX	153950951	153951050	+	0	NA	intron (NM_005334, intron 22 of 25)	intron (NM_005334, intron 22 of 25)	-6357	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
170395	chr3	185152621	185153330	+	0	NA	promoter-TSS (NM_001025266)	promoter-TSS (NM_001025266)	85	NM_001025266	285382		NM_001025266	ENSG00000187068	C3orf70	-	chromosome 3 open reading frame 70	protein-coding
68390	chr14	80809671	80809830	+	0	NA	intron (NR_157142, intron 13 of 24)	L1M2|LINE|L1	131988	NR_157142	145508		NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding
145246	chr20	38937151	38937450	+	0	NA	intron (NM_030919, intron 1 of 3)	intron (NM_030919, intron 1 of 3)	10883	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
225017	chr9	33135071	33135230	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	26458	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
186457	chr5	137742801	137743400	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-7011	NM_017415	26249		NM_017415	ENSG00000146021	KLHL3	PHA2D	kelch like family member 3	protein-coding
99372	chr17	49914471	49914830	+	0	NA	Intergenic	Intergenic	-54540	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
226352	chr9	69821521	69821780	+	0	NA	promoter-TSS (NR_038833)	promoter-TSS (NR_038833)	833	NR_131756	138255		NM_001010940	ENSG00000204711	CFAP95	C9orf135	cilia and flagella associated protein 95	protein-coding
17954	chr1	160408621	160408880	+	0	NA	intron (NM_020335, intron 1 of 7)	intron (NM_020335, intron 1 of 7)	8186	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
39271	chr11	57799071	57799450	+	0	NA	intron (NM_001331, intron 6 of 18)	intron (NM_001331, intron 6 of 18)	37458	NM_001331	1500		NM_001331	ENSG00000198561	CTNND1	BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
49699	chr12	30985871	30986050	+	0	NA	intron (NM_001370301, intron 6 of 6)	intron (NM_001370301, intron 6 of 6)	59056	NM_001080509	441631		NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding
99901	chr17	56866651	56866750	+	0	NA	3' UTR (NM_003647, exon 12 of 12)	3' UTR (NM_003647, exon 12 of 12)	18213	NR_027025	246754		NR_027025		MTVR2	-	mouse mammary tumor virus receptor homolog 2	pseudo
94964	chr17	32142091	32143350	+	0	NA	exon (NM_001288754, exon 1 of 20)	exon (NM_001288754, exon 1 of 20)	266	NM_001288754	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
196215	chr6	42780071	42780230	+	0	NA	intron (NM_001318819, intron 1 of 13)	AluJr|SINE|Alu	-3346	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
216032	chr8	9552321	9552580	+	0	NA	Intergenic	Intergenic	-3462	NM_003747	8658		NM_003747	ENSG00000173273	TNKS	ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5	tankyrase	protein-coding
71654	chr14	106841151	106841250	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	9799	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
125214	chr2	10311801	10312000	+	0	NA	intron (NM_134421, intron 1 of 5)	(CATCAT)n|Simple_repeat|Simple_repeat	8200	NM_134421	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
154423	chr22	35340121	35340730	+	0	NA	intron (NR_156428, intron 11 of 13)	intron (NR_156428, intron 11 of 13)	-3626	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
4867	chr1	23758201	23758400	+	0	NA	intron (NM_003198, intron 10 of 10)	AluSx3|SINE|Alu	14934	NM_003198	6924		NM_003198	ENSG00000011007	ELOA	ELOA1|SIII|SIII p110|TCEB3|TCEB3A	elongin A	protein-coding
155025	chr22	37442651	37442750	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-15221	NM_052906	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
101721	chr17	68539521	68539780	+	0	NA	intron (NR_027751, intron 9 of 10)	intron (NR_027751, intron 9 of 10)	18777	NR_027751	54757		NM_017565	ENSG00000108950	FAM20A	AI1G|AIGFS|FP2747	FAM20A golgi associated secretory pathway pseudokinase	protein-coding
55394	chr12	104460351	104460730	+	0	NA	intron (NM_018413, intron 1 of 2)	AluSz6|SINE|Alu	3592	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
209359	chr7	76279601	76280080	+	0	NA	intron (NM_001291831, intron 11 of 15)	intron (NM_001291831, intron 11 of 15)	-22833	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
139357	chr2	219642201	219643100	+	0	NA	TTS (NM_201574)	TTS (NM_201574)	15020	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
160498	chr3	30624401	30624800	+	0	NA	intron (NM_001024847, intron 2 of 7)	AluSc|SINE|Alu	17999	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
98047	chr17	45438801	45439300	+	0	NA	intron (NM_014798, intron 11 of 11).3	intron (NM_014798, intron 11 of 11).3	-6180	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
218774	chr8	58978521	58978980	+	0	NA	intron (NM_014729, intron 1 of 8)	L1MC1|LINE|L1	140397	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
69282	chr14	93073871	93074900	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	6933	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
2566	chr1	9786001	9786200	+	0	NA	intron (NM_014944, intron 1 of 17)	AluSz6|SINE|Alu	37865	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
229285	chr9	120716521	120716780	+	0	NA	Intergenic	Intergenic	-2180	NM_001080497	1955		NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
150148	chr21	38755721	38756150	+	0	NA	intron (NR_027065, intron 1 of 6)	intron (NR_027065, intron 1 of 6)	13039	NR_027066	400866		NM_001001789	ENSG00000223806	LINC00114	C21orf24|NCRNA00114	long intergenic non-protein coding RNA 114	ncRNA
31425	chr10	95754421	95754680	+	0	NA	non-coding (NR_038444, exon 6 of 6)	non-coding (NR_038444, exon 6 of 6)	-1102	NM_001312654	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
39751	chr11	61833251	61833830	+	0	NA	intron (NM_004265, intron 1 of 11)	intron (NM_004265, intron 1 of 11)	5240	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
31373	chr10	93845671	93845830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-48228	NM_001345993	159371		NM_153226	ENSG00000176273	SLC35G1	C10orf60|POST|TMEM20	solute carrier family 35 member G1	protein-coding
71215	chr14	105092731	105094930	+	0	NA	promoter-TSS (NR_110546)	promoter-TSS (NR_110546)	-317	NR_110546	102723354		NR_110546		LINC02298	-	long intergenic non-protein coding RNA 2298	ncRNA
86863	chr16	67943621	67943880	+	0	NA	3' UTR (NM_005072, exon 24 of 24)	3' UTR (NM_005072, exon 24 of 24)	370	NM_000229	3931		NM_000229	ENSG00000213398	LCAT	-	lecithin-cholesterol acyltransferase	protein-coding
194668	chr6	33645401	33645980	+	0	NA	intron (NM_002224, intron 2 of 57)	L1ME3G|LINE|L1	-11945	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
118726	chr19	38258621	38258900	+	0	NA	Intergenic	AluSx|SINE|Alu	-2386	NM_033256	94274		NM_033256	ENSG00000167641	PPP1R14A	CPI-17|CPI17|PPP1INL	protein phosphatase 1 regulatory inhibitor subunit 14A	protein-coding
42645	chr11	72430851	72431700	+	0	NA	intron (NM_001258394, intron 1 of 17)	intron (NM_001258394, intron 1 of 17)	3256	NM_030813	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
56579	chr12	117189571	117191150	+	0	NA	exon (NM_033624, exon 1 of 12)	exon (NM_033624, exon 1 of 12)	110	NM_015002	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
143707	chr20	32231771	32232850	+	0	NA	intron (NM_015352, intron 6 of 6)	FLAM_C|SINE|Alu	-5485	NR_031726	100302183		NR_031726	ENSG00000284125	MIR1825	MIRN1825|hsa-mir-1825	microRNA 1825	ncRNA
57948	chr12	123715121	123715400	+	0	NA	intron (NM_012463, intron 1 of 19)	intron (NM_012463, intron 1 of 19)	2907	NM_012463	23545		NM_012463	ENSG00000185344	ATP6V0A2	A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS|a2V	ATPase H+ transporting V0 subunit a2	protein-coding
46924	chr11	134275681	134277630	+	0	NA	5' UTR (NM_001080407, exon 1 of 20)	5' UTR (NM_001080407, exon 1 of 20)	276	NM_001080407	112937		NM_138416	ENSG00000166105	GLB1L3	-	galactosidase beta 1 like 3	protein-coding
224122	chr9	4667671	4668300	+	0	NA	Intergenic	L2|LINE|L2	-1505	NR_148444	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
63069	chr13	113159171	113159750	+	0	NA	intron (NM_001256134, intron 2 of 8)	intron (NM_001256134, intron 2 of 8)	806	NM_001256134	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
94098	chr17	27753121	27753400	+	0	NA	Intergenic	Intergenic	47269	NM_000625	4843		NM_000625	ENSG00000007171	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2	protein-coding
139851	chr2	230473421	230473900	+	0	NA	intron (NM_001080391, intron 16 of 28)	intron (NM_001080391, intron 16 of 28)	56904	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
6368	chr1	27862971	27863530	+	0	NA	Intergenic	Intergenic	-9293	NM_004848	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
43700	chr11	85967871	85968230	+	0	NA	intron (NM_007166, intron 19 of 19)	intron (NM_007166, intron 19 of 19)	101034	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
36946	chr11	10989951	10990050	+	0	NA	Intergenic	Intergenic	131783	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
24243	chr1	236259051	236259350	+	0	NA	intron (NM_019891, intron 2 of 15)	L1M3de|LINE|L1	22758	NM_019891	56605		NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding
192977	chr6	27894101	27894900	+	0	NA	TTS (NM_003527)	TTS (NM_003527)	1075	NM_003527	8348		NM_003527	ENSG00000274641	H2BC17	H2B.2|H2B/n|H2BFN|HIST1H2BO|dJ193B12.2	H2B clustered histone 17	protein-coding
87133	chr16	69123851	69124700	+	0	NA	intron (NM_001002847, intron 1 of 2)	intron (NM_001002847, intron 1 of 2)	7884	NM_001366604	113455421		NM_001002847	ENSG00000286140	DERPC	-	DERPC proline and glycine rich nuclear protein	protein-coding
112843	chr19	7538151	7538450	+	0	NA	intron (NM_006702, intron 6 of 34)	AluJr|SINE|Alu	2583	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
215556	chr7	158805871	158806480	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	23334	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
139965	chr2	230874151	230874850	+	0	NA	intron (NM_001287240, intron 2 of 5)	intron (NM_001287240, intron 2 of 5)	9550	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
62804	chr13	109747701	109748100	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	19626	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
200571	chr6	136285901	136286100	+	0	NA	intron (NM_001301038, intron 1 of 12)	AluSx|SINE|Alu	3846	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
158378	chr22	50484201	50484780	+	0	NA	3' UTR (NM_001253845, exon 3 of 3)	3' UTR (NM_001253845, exon 3 of 3)	-2369	NM_017584	55586		NM_017584	ENSG00000100253	MIOX	ALDRL6	myo-inositol oxygenase	protein-coding
110070	chr19	1497101	1497500	+	0	NA	3' UTR (NM_001329556, exon 6 of 6)	3' UTR (NM_001329556, exon 6 of 6)	6119	NM_138393	92840		NM_138393	ENSG00000115255	REEP6	C19orf32|DP1L1|REEP6.1|REEP6.2|RP77|TB1|TB2L1|Yip2f	receptor accessory protein 6	protein-coding
57771	chr12	122989051	122989150	+	0	NA	intron (NM_001300801, intron 18 of 25)	intron (NM_001300801, intron 18 of 25)	9040	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
151937	chr22	19107921	19108180	+	0	NA	intron (NM_001184781, intron 1 of 9)	L2b|LINE|L2	14362	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
210918	chr7	101216901	101219150	+	0	NA	promoter-TSS (NM_001084)	promoter-TSS (NM_001084)	-140	NM_006349	10467		NM_006349	ENSG00000106400	ZNHIT1	CG1I|ZNFN4A1|p18(Hamlet)	zinc finger HIT-type containing 1	protein-coding
21081	chr1	203316371	203316980	+	0	NA	Intergenic	Intergenic	11156	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
90998	chr17	2756671	2756830	+	0	NA	Intergenic	Intergenic	-7098	NM_001355573	101928991		NM_001355573	ENSG00000277200	CCDC92B	-	coiled-coil domain containing 92B	protein-coding
25089	chr10	3873601	3874400	+	0	NA	Intergenic	Intergenic	40050	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
114225	chr19	11477151	11477450	+	0	NA	intron (NM_001420, intron 1 of 6)	AluJb|SINE|Alu	3746	NM_032281	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
13450	chr1	114488621	114489550	+	0	NA	intron (NM_033020, intron 1 of 18)	L1MB8|LINE|L1	22118	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
199561	chr6	118889951	118890450	+	0	NA	intron (NM_001378357, intron 8 of 13)	intron (NM_001378357, intron 8 of 13)	-3952	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
148900	chr21	8469521	8469800	+	0	NA	Intergenic	Intergenic	28514	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
45492	chr11	118622371	118622830	+	0	NA	intron (NM_001144759, intron 4 of 20)	intron (NM_001144759, intron 4 of 20)	14985	NM_001144759	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
236906	chrX	86046371	86046530	+	0	NA	intron (NM_001145414, intron 1 of 4)	MIRb|SINE|MIR	856	NM_001362518	1121		NM_000390	ENSG00000188419	CHM	DXS540|GGTA|HSD-32|REP-1|TCD	CHM Rab escort protein	protein-coding
30524	chr10	79352251	79352550	+	0	NA	intron (NM_005729, intron 5 of 5)	intron (NM_005729, intron 5 of 5)	4931	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
175491	chr4	73240521	73240900	+	0	NA	intron (NM_032217, intron 1 of 33)	intron (NM_032217, intron 1 of 33)	-17653	NM_001286771	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
22904	chr1	225878571	225879380	+	0	NA	intron (NM_014698, intron 2 of 24)	intron (NM_014698, intron 2 of 24)	3405	NM_014698	9725		NM_014698	ENSG00000196187	TMEM63A	HLD19|KIAA0792	transmembrane protein 63A	protein-coding
129315	chr2	68717121	68717750	+	0	NA	Intergenic	MIRb|SINE|MIR	-17376	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
169781	chr3	172720151	172720250	+	0	NA	Intergenic	AluY|SINE|Alu	-9133	NM_020792	57552		NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
158651	chr3	5006271	5007330	+	0	NA	Intergenic	(CCCAC)n|Simple_repeat|Simple_repeat	-26839	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
78864	chr15	100373051	100373900	+	0	NA	intron (NR_120374, intron 1 of 4)	CpG	536	NR_120374	102723320		NR_120374		CERS3-AS1	-	CERS3 antisense RNA 1	ncRNA
20619	chr1	199009451	199009850	+	0	NA	intron (NR_110525, intron 1 of 2)	MER121B|DNA|hAT?	-6483	NR_126351	104266961		NR_126351	ENSG00000235492	LINC01221	TCONS_00000366	long intergenic non-protein coding RNA 1221	ncRNA
46368	chr11	126212871	126213030	+	0	NA	intron (NM_024556, intron 1 of 8)	intron (NM_024556, intron 1 of 8)	1168	NM_024556	79607		NM_024556	ENSG00000197798	FAM118B	-	family with sequence similarity 118 member B	protein-coding
55024	chr12	96382451	96383150	+	0	NA	intron (NM_002595, intron 1 of 16)	L1PA16|LINE|L1	17639	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
148650	chr21	6106401	6106600	+	0	NA	Intergenic	Intergenic	-4631	NM_001320643	102724428		NM_001320643	ENSG00000275993	LOC102724428	SIK|SIK-1|SIK1|SIK1B|SNF1LK	salt inducible kinase 1B (putative)	protein-coding
85464	chr16	50676101	50676500	+	0	NA	intron (NM_001144972, intron 2 of 3)	intron (NM_001144972, intron 2 of 3)	5012	NM_182854	124460		NM_153337	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
136150	chr2	174331001	174331730	+	0	NA	TTS (NR_038897)	TTS (NR_038897)	-3589	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
223645	chr8	144351471	144351930	+	0	NA	Intergenic	Intergenic	3231	NM_001252404	340393		NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
194940	chr6	35241121	35241980	+	0	NA	exon (NM_001303136, exon 11 of 22)	exon (NM_001303136, exon 11 of 22)	-18185	NM_003427	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
125800	chr2	24009771	24011530	+	0	NA	intron (NM_001346880, intron 1 of 13)	intron (NM_001346880, intron 1 of 13)	565	NM_001346880	388931		NM_001080473	ENSG00000205639	MFSD2B	SLC59A2	MFSD2 lysolipid transporter B, sphingolipid	protein-coding
236656	chrX	76052351	76052450	+	0	NA	Intergenic	L1PA4|LINE|L1	-120529	NM_001300888	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
79231	chr16	376771	377630	+	0	NA	intron (NM_021259, intron 3 of 12)	intron (NM_021259, intron 3 of 12)	4778	NM_021259	58986		NM_021259	ENSG00000129925	PGAP6	GPI-PLA2|M83|TMEM6|TMEM8|TMEM8A	post-GPI attachment to proteins 6	protein-coding
119182	chr19	39422201	39423030	+	0	NA	intron (NM_001351694, intron 17 of 17)	AluSx1|SINE|Alu	8836	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
175760	chr4	77766871	77767180	+	0	NA	intron (NM_144571, intron 4 of 11)	AluSx1|SINE|Alu	52039	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
137740	chr2	197837871	197838730	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	33707	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
89016	chr16	88117101	88117300	+	0	NA	Intergenic	Intergenic	-16215	NR_120310	400553		NR_120310	ENSG00000205037	LOC400553	-	uncharacterized LOC400553	ncRNA
124094	chr19	55642401	55642900	+	0	NA	promoter-TSS (NM_016535)	promoter-TSS (NM_016535)	553	NM_001163423	51157		NM_016202	ENSG00000213015	ZNF580	-	zinc finger protein 580	protein-coding
196493	chr6	43634321	43634600	+	0	NA	intron (NM_001003690, intron 2 of 3)	AluJr4|SINE|Alu	-1380	NM_014628	9587		NM_014628	ENSG00000124688	MAD2L1BP	CMT2|p31comet	MAD2L1 binding protein	protein-coding
158901	chr3	9943171	9944030	+	0	NA	intron (NM_001374316, intron 10 of 10)	(AGCCCC)n|Simple_repeat|Simple_repeat	-3804	NR_046734	100874032		NR_046734	ENSG00000230082	PRRT3-AS1	-	PRRT3 antisense RNA 1	ncRNA
167597	chr3	129566551	129566650	+	0	NA	exon (NM_015103, exon 23 of 36)	exon (NM_015103, exon 23 of 36)	18215	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
234453	chrX	17654171	17654600	+	0	NA	intron (NM_001291868, intron 1 of 7)	intron (NM_001291868, intron 1 of 7)	18885	NM_001291868	4810		NM_198270	ENSG00000188158	NHS	CTRCT40|CXN|SCML1	NHS actin remodeling regulator	protein-coding
145279	chr20	41006921	41007550	+	0	NA	intron (NR_145525, intron 2 of 2)	MER52A|LTR|ERV1	-21587	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
235055	chrX	40111721	40111980	+	0	NA	intron (NM_001123384, intron 1 of 13)	L1ME4b|LINE|L1	-13892	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
18518	chr1	161773971	161774330	+	0	NA	intron (NM_007348, intron 1 of 15)	L1MC5a|LINE|L1	7830	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
63603	chr14	20506121	20506380	+	0	NA	intron (NM_001012975, intron 1 of 1)	SVA_D|Retroposon|SVA	2017	NM_001012975	338879		NM_001012975	ENSG00000182545	RNASE10	RAH1|RNASE9	ribonuclease A family member 10 (inactive)	protein-coding
15146	chr1	148885351	148885450	+	0	NA	intron (NM_001350522, intron 3 of 45)	L2a|LINE|L2	-1973	NM_001195260	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
84124	chr16	29677721	29678130	+	0	NA	Intergenic	AluJr|SINE|Alu	-1083	NM_001318249	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
3179	chr1	13702551	13704130	+	0	NA	intron (NM_001135610, intron 1 of 7)	MER20|DNA|hAT-Charlie	-1515	NM_015866	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
14179	chr1	121516001	121516950	+	0	NA	Intergenic	MER95|LTR|ERV1	-2637	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
202326	chr6	157334951	157335250	+	0	NA	Intergenic	AluSq2|SINE|Alu	-11581	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
162542	chr3	48632701	48634300	+	0	NA	TTS (NR_106882)	TTS (NR_106882)	198	NR_106882	102465495		NR_106882	ENSG00000284364	MIR6824	hsa-mir-6824	microRNA 6824	ncRNA
194696	chr6	33692351	33693400	+	0	NA	exon (NM_002224, exon 55 of 58)	exon (NM_002224, exon 55 of 58)	-5253	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
224297	chr9	6439171	6439930	+	0	NA	intron (NR_046386, intron 3 of 16)	intron (NR_046386, intron 3 of 16)	26351	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
167411	chr3	129002951	129003130	+	0	NA	promoter-TSS (NM_001348520)	promoter-TSS (NM_001348520)	-788	NM_001348520	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
164322	chr3	57758751	57758850	+	0	NA	intron (NR_165328, intron 2 of 22)	intron (NR_165328, intron 2 of 22)	1544	NM_001304421	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
228469	chr9	99855701	99856300	+	0	NA	intron (NM_173200, intron 8 of 8)	L3|LINE|CR1	34115	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
204546	chr7	4973471	4975000	+	0	NA	intron (NR_023385, intron 1 of 4)	CpG	250	NR_023385	441191		NR_015449	ENSG00000196204	RNF216P1	RNF216L|hCG2040556	ring finger protein 216 pseudogene 1	pseudo
46677	chr11	128732121	128732750	+	0	NA	intron (NM_001271010, intron 1 of 9)	L2a|LINE|L2	-36412	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
10694	chr1	74732021	74732280	+	0	NA	intron (NM_001130042, intron 1 of 9)	intron (NM_001130042, intron 1 of 9)	900	NM_001889	1429		NM_001889	ENSG00000116791	CRYZ	-	crystallin zeta	protein-coding
175517	chr4	74320621	74320880	+	0	NA	Intergenic	Intergenic	12280	NM_001270990	255324		NM_001013442	ENSG00000182585	EPGN	ALGV3072|EPG|PRO9904	epithelial mitogen	protein-coding
106848	chr18	24049421	24049680	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-34090	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
147162	chr20	56433521	56434180	+	0	NA	intron (NM_001164114, intron 1 of 5)	intron (NM_001164114, intron 1 of 5)	21590	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
222593	chr8	141002001	141002980	+	0	NA	promoter-TSS (NM_001352699)	promoter-TSS (NM_001352699)	-411	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
40546	chr11	64315621	64316080	+	0	NA	TTS (NM_016404)	TTS (NM_016404)	1709	NM_001286082	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
68020	chr14	75140071	75140430	+	0	NA	intron (NM_006827, intron 3 of 4)	AluSg|SINE|Alu	-13202	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
70847	chr14	103700271	103700500	+	0	NA	intron (NM_001371232, intron 7 of 9)	intron (NM_001371232, intron 7 of 9)	15066	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
183928	chr5	87402001	87402450	+	0	NA	intron (NR_157069, intron 4 of 8)	intron (NR_157069, intron 4 of 8)	10679	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
18382	chr1	161387001	161387200	+	0	NA	Intergenic	AluSx3|SINE|Alu	-19224	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
47331	chr12	1802751	1802850	+	0	NA	intron (NM_172364, intron 29 of 37)	L2c|LINE|L2	-17467	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
9604	chr1	52356901	52357100	+	0	NA	intron (NM_032449, intron 16 of 23)	intron (NM_032449, intron 16 of 23)	9205	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
11005	chr1	84673271	84673430	+	0	NA	intron (NM_001166293, intron 1 of 13)	L2a|LINE|L2	17111	NM_001166294	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
115031	chr19	14094451	14095430	+	0	NA	intron (NM_207518, intron 8 of 9)	MIRc|SINE|MIR	-4189	NM_138352	90378		NM_138352	ENSG00000141858	SAMD1	-	sterile alpha motif domain containing 1	protein-coding
205530	chr7	19116901	19117880	+	0	NA	non-coding (NR_149001, exon 1 of 3)	non-coding (NR_149001, exon 1 of 3)	246	NM_000474	7291		NM_000474	ENSG00000122691	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding
83919	chr16	29021471	29022230	+	0	NA	Intergenic	AluSx1|SINE|Alu	36798	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
25437	chr10	6584371	6584530	+	0	NA	non-coding (NR_036502, exon 3 of 3)	non-coding (NR_036502, exon 3 of 3)	-3804	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
38334	chr11	44550021	44550480	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-15413	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
213674	chr7	140053701	140054450	+	0	NA	intron (NR_130117, intron 4 of 10)	intron (NR_130117, intron 4 of 10)	8876	NM_022750	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
168823	chr3	152238021	152238580	+	0	NA	Intergenic	LTR33|LTR|ERVL	-5332	NM_001376839	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
192999	chr6	28141571	28142480	+	0	NA	promoter-TSS (NM_001278121)	promoter-TSS (NM_001278121)	142	NM_001278119	7745		NM_006298	ENSG00000198315	ZKSCAN8	LD5-1|ZNF192|ZSCAN40	zinc finger with KRAB and SCAN domains 8	protein-coding
115304	chr19	14683471	14683650	+	0	NA	Intergenic	Intergenic	-6488	NM_001352244	84449		NM_032433	ENSG00000160961	ZNF333	-	zinc finger protein 333	protein-coding
125351	chr2	10902651	10902750	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-9234	NM_002236	3754		NM_002236	ENSG00000162975	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel modifier subfamily F member 1	protein-coding
12033	chr1	97911671	97912030	+	0	NA	intron (NM_001160301, intron 1 of 5)	intron (NM_001160301, intron 1 of 5)	9184	NM_000110	1806		NM_000110	ENSG00000188641	DPYD	DHP|DHPDHASE|DPD|DYPD	dihydropyrimidine dehydrogenase	protein-coding
5123	chr1	24885221	24885480	+	0	NA	Intergenic	AluJb|SINE|Alu	34066	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
219769	chr8	81103101	81103630	+	0	NA	intron (NM_018440, intron 1 of 8)	MIRb|SINE|MIR	8703	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
163108	chr3	50117501	50118030	+	0	NA	non-coding (NR_135301, exon 4 of 4)	non-coding (NR_135301, exon 4 of 4)	-16777	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
88797	chr16	87382801	87384750	+	0	NA	promoter-TSS (NM_024735)	promoter-TSS (NM_024735)	1	NM_024735	79791		NM_024735	ENSG00000103264	FBXO31	FBX14|FBXO14|Fbx31|MRT45|pp2386	F-box protein 31	protein-coding
99862	chr17	55926301	55926700	+	0	NA	Intergenic	L3b|LINE|CR1	175395	NM_001102402	58488		NM_021213	ENSG00000141179	PCTP	PC-TP|STARD2	phosphatidylcholine transfer protein	protein-coding
17230	chr1	156286871	156287030	+	0	NA	intron (NM_001323617, intron 1 of 22)	AluSz|SINE|Alu	2625	NM_032323	84283		NM_032323	ENSG00000163472	TMEM79	MATT	transmembrane protein 79	protein-coding
177720	chr4	122205671	122205830	+	0	NA	intron (NM_001384125, intron 15 of 87)	intron (NM_001384125, intron 15 of 87)	35147	NM_015312	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
98451	chr17	46979101	46979850	+	0	NA	promoter-TSS (NM_203400)	promoter-TSS (NM_203400)	-222	NM_203400	388394		NM_203400	ENSG00000179673	RPRML	-	reprimo like	protein-coding
8088	chr1	39038671	39038830	+	0	NA	Intergenic	AluSx|SINE|Alu	12400	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
223971	chr9	2016001	2016900	+	0	NA	intron (NM_003070, intron 1 of 33)	CpG	1103	NM_001289397	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
40308	chr11	63881951	63882050	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	-6537	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
130591	chr2	85862421	85863250	+	0	NA	intron (NM_001354234, intron 2 of 8)	intron (NM_001354234, intron 2 of 8)	4835	NM_001042437	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
216683	chr8	22159151	22159250	+	0	NA	intron (NM_001385659, intron 1 of 7)	AluJo|SINE|Alu	721	NM_001385659	6440		NM_003018	ENSG00000168484	SFTPC	BRICD6|PSP-C|SFTP2|SMDP2|SP-C|SP5	surfactant protein C	protein-coding
159403	chr3	13461421	13462080	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	18303	NR_046690	100874101		NR_046690	ENSG00000244502	HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
2136	chr1	8350721	8351180	+	0	NA	Intergenic	Intergenic	32836	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
33280	chr10	114539971	114540330	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	-13237	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
195936	chr6	41920571	41922580	+	0	NA	promoter-TSS (NR_131160)	promoter-TSS (NR_131160)	76	NM_004053	705		NM_004053	ENSG00000112578	BYSL	BYSTIN|Enp1	bystin like	protein-coding
152235	chr22	20160601	20161100	+	0	NA	Intergenic	Intergenic	-9795	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
239011	chrY	2859751	2860050	+	0	NA	intron (NM_001008, intron 5 of 6)	L1MB2|LINE|L1	18298	NM_001008	6192		NM_001008	ENSG00000129824	RPS4Y1	RPS4Y|S4	ribosomal protein S4 Y-linked 1	protein-coding
182065	chr5	55946551	55947230	+	0	NA	intron (NR_157112, intron 16 of 17)	L1ME1|LINE|L1	48073	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
213773	chr7	140675151	140675630	+	0	NA	intron (NM_052853, intron 2 of 7)	FLAM_C|SINE|Alu	2445	NM_052853	90956		NM_052853	ENSG00000133597	ADCK2	AARF	aarF domain containing kinase 2	protein-coding
197244	chr6	69813021	69813900	+	0	NA	Intergenic	LTR39|LTR|ERV1	-16450	NM_018368	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
41293	chr11	65865451	65866150	+	0	NA	TTS (NR_037718)	TTS (NR_037718)	5367	NR_146598	80198		NM_025128	ENSG00000172732	MUS81	SLX3	MUS81 structure-specific endonuclease subunit	protein-coding
143882	chr20	32568771	32568930	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	16483	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
233721	chrX	1336371	1336530	+	0	NA	promoter-TSS (NM_002183).2	promoter-TSS (NM_002183).2	-166	NM_001267713	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
180363	chr5	6828951	6829880	+	0	NA	Intergenic	MIRb|SINE|MIR	-1494	NR_036242	100422999		NR_036242	ENSG00000283420	MIR4278	-	microRNA 4278	ncRNA
214486	chr7	150406861	150408000	+	0	NA	intron (NR_027237, intron 1 of 2)	L2c|LINE|L2	1678	NR_027237	728743		NM_001080852	ENSG00000284691	LOC728743	-	zinc finger domain-containing protein LOC728743	protein-coding
35673	chr11	1875551	1876000	+	0	NA	intron (NM_001013254, intron 1 of 10)	intron (NM_001013254, intron 1 of 10)	-4270	NR_107001	102465993		NR_107001	ENSG00000284594	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
162746	chr3	49050851	49051150	+	0	NA	intron (NM_001320580, intron 4 of 10)	intron (NM_001320580, intron 4 of 10)	-21602	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
200419	chr6	134904921	134905380	+	0	NA	Intergenic	LTR12C|LTR|ERV1	44951	NM_170771	64577		NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding
48585	chr12	10307771	10308950	+	0	NA	intron (NM_007334, intron 1 of 4)	intron (NM_007334, intron 1 of 4)	490	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
130417	chr2	85345071	85345830	+	0	NA	intron (NM_017750, intron 6 of 10)	intron (NM_017750, intron 6 of 10)	9078	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
3219	chr1	13768021	13768650	+	0	NA	intron (NM_001135610, intron 6 of 7)	AluY|SINE|Alu	18920	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
29866	chr10	72369851	72370980	+	0	NA	intron (NM_006077, intron 11 of 11)	intron (NM_006077, intron 11 of 11)	-15496	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
216784	chr8	22514571	22514730	+	0	NA	intron (NM_005605, intron 6 of 13)	L1MA3|LINE|L1	-37277	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
204742	chr7	5568951	5571300	+	0	NA	Intergenic	CpG	-22691	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
191275	chr6	6315601	6315800	+	0	NA	intron (NM_000129, intron 2 of 14)	intron (NM_000129, intron 2 of 14)	4962	NM_000129	2162		NM_000129	ENSG00000124491	F13A1	F13A	coagulation factor XIII A chain	protein-coding
148365	chr20	63861571	63861730	+	0	NA	non-coding (NR_165312, exon 1 of 1)	non-coding (NR_165312, exon 1 of 1)	152	NM_080622	140701		NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
9421	chr1	47755501	47755700	+	0	NA	Intergenic	Intergenic	241785	NM_001194986	388630		NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
454	chr1	1133821	1134550	+	0	NA	Intergenic	Intergenic	-2832	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
145122	chr20	38807101	38808100	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	1903	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
40742	chr11	64830721	64830980	+	0	NA	intron (NM_017525, intron 28 of 36)	MIRb|SINE|MIR	13803	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
68875	chr14	91319771	91320680	+	0	NA	intron (NM_001080414, intron 13 of 29)	MER21C|LTR|ERVL	-66345	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
57537	chr12	122148971	122149330	+	0	NA	Intergenic	Intergenic	-18569	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
25955	chr10	11578621	11578880	+	0	NA	intron (NR_125732, intron 2 of 2)	Charlie2b|DNA|hAT-Charlie	-32551	NR_160647	107984208		NR_160647	ENSG00000271360	USP6NL-AS1	-	USP6NL antisense RNA 1	ncRNA
52285	chr12	54583001	54583400	+	0	NA	intron (NM_006741, intron 3 of 6)	intron (NM_006741, intron 3 of 6)	5459	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
150239	chr21	41364021	41365030	+	0	NA	intron (NM_002463, intron 1 of 13)	intron (NM_002463, intron 1 of 13)	2498	NM_002463	4600		NM_002463	ENSG00000183486	MX2	MXB	MX dynamin like GTPase 2	protein-coding
69966	chr14	99789671	99790050	+	0	NA	intron (NM_001375411, intron 1 of 21)	intron (NM_001375411, intron 1 of 21)	-3553	NM_001008707	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
70426	chr14	102029071	102029430	+	0	NA	intron (NM_001376, intron 48 of 77)	intron (NM_001376, intron 48 of 77)	57794	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
139300	chr2	219521021	219521600	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	6828	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
145297	chr20	41042771	41044130	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	14628	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
56320	chr12	112751521	112752480	+	0	NA	intron (NM_001347952, intron 1 of 21)	intron (NM_001347952, intron 1 of 21)	-39538	NM_001347953	22895		NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding
180069	chr5	1097321	1097580	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	14613	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
28975	chr10	63251671	63251830	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	17473	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
224279	chr9	6415271	6415900	+	0	NA	intron (NR_046386, intron 1 of 16)	MER91B|DNA|hAT-Tip100	2386	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
30216	chr10	74886601	74887000	+	0	NA	intron (NM_012330, intron 3 of 17).2	intron (NM_012330, intron 3 of 17).2	-25986	NR_134476								
65855	chr14	55050871	55052950	+	0	NA	intron (NM_144578, intron 1 of 3)	CpG	263	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
202415	chr6	157889921	157890380	+	0	NA	intron (NM_016224, intron 4 of 17)	intron (NM_016224, intron 4 of 17)	66904	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
118522	chr19	36008301	36008500	+	0	NA	TTS (NM_198867)	TTS (NM_198867)	413	NM_001297735	163183		NM_153233	ENSG00000181392	SYNE4	C19orf46|DFNB76|KASH4|Nesp4	spectrin repeat containing nuclear envelope family member 4	protein-coding
222020	chr8	130079901	130080900	+	0	NA	intron (NM_001362925, intron 25 of 29)	intron (NM_001362925, intron 25 of 29)	4368	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
202688	chr6	158800351	158801330	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-17139	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
80803	chr16	3400371	3402100	+	0	NA	promoter-TSS (NM_001347868)	promoter-TSS (NM_001347868)	20	NM_001347868	7727		NM_003450	ENSG00000103343	ZNF174	ZSCAN8	zinc finger protein 174	protein-coding
82366	chr16	15992701	15993100	+	0	NA	intron (NM_004996, intron 1 of 30)	L2b|LINE|L2	43284	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
38653	chr11	46374951	46375400	+	0	NA	intron (NM_001199266, intron 19 of 30)	intron (NM_001199266, intron 19 of 30)	-1227	NR_039837	100616368		NR_039837	ENSG00000264102	MIR4688	mir-4688	microRNA 4688	ncRNA
5316	chr1	25230571	25231150	+	0	NA	intron (NM_015484, intron 2 of 6)	AluY|SINE|Alu	1642	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
47639	chr12	6232771	6233130	+	0	NA	intron (NM_001769, intron 3 of 7)	intron (NM_001769, intron 3 of 7)	32550	NM_001769	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
135815	chr2	170301671	170301830	+	0	NA	intron (NR_045682, intron 7 of 35)	intron (NR_045682, intron 7 of 35)	49193	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
106361	chr18	13260471	13260830	+	0	NA	intron (NM_001378100, intron 1 of 6)	intron (NM_001378100, intron 1 of 6)	-16712	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
26013	chr10	12226421	12226950	+	0	NA	intron (NM_006023, intron 6 of 12)	SVA_B|Retroposon|SVA	30497	NM_006023	8872		NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
192124	chr6	16747271	16748080	+	0	NA	intron (NR_152112, intron 1 of 1)	(A)n|Simple_repeat|Simple_repeat	12509	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
132718	chr2	109116971	109117350	+	0	NA	Intergenic	L1PA3|LINE|L1	-12045	NM_001099289	344558		NM_001099289	ENSG00000172985	SH3RF3	POSH2|SH3MD4	SH3 domain containing ring finger 3	protein-coding
97857	chr17	44985051	44985450	+	0	NA	Intergenic	Intergenic	-16947	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
14867	chr1	146411921	146412980	+	0	NA	Intergenic	Intergenic	35643	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
13617	chr1	116404201	116404600	+	0	NA	TTS (NR_024124)	TTS (NR_024124)	14159	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
190995	chr6	3054851	3055200	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-8942	NM_001317061	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
87705	chr16	74982701	74983200	+	0	NA	intron (NM_030581, intron 1 of 25)	L2a|LINE|L2	2173	NM_030581	79726		NM_030581	ENSG00000103091	WDR59	CDW12|FP977|p90-120	WD repeat domain 59	protein-coding
105514	chr17	83109471	83109630	+	0	NA	Intergenic	Intergenic	28404	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
186400	chr5	135373621	135374180	+	0	NA	intron (NM_138610, intron 2 of 8)	intron (NM_138610, intron 2 of 8)	25331	NM_138610	9555		NM_004893	ENSG00000113648	MACROH2A1	H2A.y|H2A/y|H2AF12M|H2AFY|MACROH2A1.1|mH2A1|macroH2A1.2	macroH2A.1 histone	protein-coding
20311	chr1	197392971	197393350	+	0	NA	intron (NM_201253, intron 5 of 11)	intron (NM_201253, intron 5 of 11)	124908	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
129426	chr2	69395301	69395500	+	0	NA	TTS (NR_045632)	TTS (NR_045632)	-8173	NM_001244710	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
49021	chr12	14275901	14276100	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-89632	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
91479	chr17	4892021	4892530	+	0	NA	intron (NM_015716, intron 17 of 30)	intron (NM_015716, intron 17 of 30)	-7261	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
95471	chr17	36193971	36194430	+	0	NA	TTS (NM_021006)	TTS (NM_021006)	2106	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
172871	chr4	3341451	3341750	+	0	NA	intron (NM_198229, intron 2 of 17)	intron (NM_198229, intron 2 of 17)	27453	NM_002926	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
215752	chr8	1973151	1974450	+	0	NA	promoter-TSS (NR_136274)	promoter-TSS (NR_136274)	123	NM_014867	9920		NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
219835	chr8	81780521	81780930	+	0	NA	Intergenic	Intergenic	48277	NM_152284	92421		NM_152284	ENSG00000164695	CHMP4C	SNF7-3|Shax3|VPS32C	charged multivesicular body protein 4C	protein-coding
167579	chr3	129552551	129552650	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	4215	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
235583	chrX	47563771	47564130	+	0	NA	intron (NM_001256197, intron 3 of 5)	MER44C|DNA|TcMar-Tigger	2745	NM_001654	369		NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
125678	chr2	20291071	20291450	+	0	NA	intron (NM_015317, intron 9 of 20)	intron (NM_015317, intron 9 of 20)	36126	NM_001282791	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
193413	chr6	30447171	30447700	+	0	NA	Intergenic	Intergenic	-42074	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
223308	chr8	143808221	143808780	+	0	NA	intron (NM_182706, intron 15 of 36).2	intron (NM_182706, intron 15 of 36).2	4542	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
238508	chrX	153649401	153650250	+	0	NA	intron (NM_001318503, intron 3 of 3)	intron (NM_001318503, intron 3 of 3)	2622	NM_001318503	1852		NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
209585	chr7	77533521	77533800	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3635	NM_002835	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
53431	chr12	65123471	65123630	+	0	NA	Intergenic	Intergenic	-2245	NM_007191	11197		NM_007191	ENSG00000156076	WIF1	WIF-1	WNT inhibitory factor 1	protein-coding
141631	chr2	241699071	241699230	+	0	NA	intron (NM_001330161, intron 2 of 7)	AluSp|SINE|Alu	-2889	NM_032329	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
229474	chr9	122094801	122095930	+	0	NA	Intergenic	Intergenic	-2057	NM_194252	158135		NM_194252	ENSG00000175764	TTLL11	C9orf148|C9orf20|TTLL11-IT1|bA244O19.1	tubulin tyrosine ligase like 11	protein-coding
107923	chr18	57624851	57625330	+	0	NA	Intergenic	Intergenic	-3254	NM_004539	4677		NM_004539	ENSG00000134440	NARS1	ASNRS|NARS|NEDMILEG|NEDMILG	asparaginyl-tRNA synthetase 1	protein-coding
140813	chr2	236510101	236510330	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-2680	NM_001270584	79781		NM_024726	ENSG00000132321	IQCA1	4930465P12Rik|DRC11|IQCA	IQ motif containing with AAA domain 1	protein-coding
106867	chr18	24118001	24118200	+	0	NA	intron (NM_001135993, intron 7 of 13)	intron (NM_001135993, intron 7 of 13)	4773	NM_001292030	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
24284	chr1	236521651	236521950	+	0	NA	intron (NM_201545, intron 2 of 11)	AluSz|SINE|Alu	-1639	NM_006499	3964		NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
192670	chr6	26222701	26222980	+	0	NA	Intergenic	Charlie5|DNA|hAT-Charlie	-1338	NM_001381999	8353		NM_003532	ENSG00000274750	H3C6	H3.1|H3/d|H3C1|H3C10|H3C11|H3C12|H3C2|H3C3|H3C4|H3C7|H3C8|H3FD|HIST1H3E	H3 clustered histone 6	protein-coding
144384	chr20	35161301	35162130	+	0	NA	intron (NM_001355008, intron 5 of 14)	L1PA7|LINE|L1	-10357	NM_006404	10544		NM_006404	ENSG00000101000	PROCR	CCCA|CCD41|EPCR	protein C receptor	protein-coding
236869	chrX	80812001	80812430	+	0	NA	Intergenic	LTR41|LTR|ERVL	-2338	NM_153252	254065		NM_153252	ENSG00000165288	BRWD3	BRODL|MRX93|XLID93	bromodomain and WD repeat domain containing 3	protein-coding
137518	chr2	197194101	197194500	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	-3691	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
78	chr1	293071	293600	+	0	NA	Intergenic	L2a|LINE|L2	-86738	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
181885	chr5	54523571	54523730	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	5891	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
33466	chr10	119062601	119063000	+	0	NA	intron (NM_003750, intron 7 of 21)	AluSz|SINE|Alu	-2662	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
85297	chr16	49014351	49014450	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	267438	NM_004352	869		NM_004352	ENSG00000102924	CBLN1	-	cerebellin 1 precursor	protein-coding
8679	chr1	41914321	41915000	+	0	NA	intron (NR_038260, intron 1 of 2)	intron (NR_038260, intron 1 of 2)	4262	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
120455	chr19	44643301	44644450	+	0	NA	promoter-TSS (NM_006505)	promoter-TSS (NM_006505)	-35	NM_001135768	5817		NM_006505	ENSG00000073008	PVR	CD155|HVED|NECL5|Necl-5|PVS|TAGE4	PVR cell adhesion molecule	protein-coding
6952	chr1	31756121	31757030	+	0	NA	exon (NM_001294335, exon 4 of 33)	exon (NM_001294335, exon 4 of 33)	2160	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
112433	chr19	6358251	6358550	+	0	NA	Intergenic	Intergenic	-3131	NM_006012	8192		NM_006012	ENSG00000125656	CLPP	DFNB81|PRLTS3	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding
162779	chr3	49088471	49088630	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluSx|SINE|Alu	5082	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
75633	chr15	67181301	67181530	+	0	NA	exon (NM_001145103, exon 6 of 9)	exon (NM_001145103, exon 6 of 9)	15260	NM_001145104	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
172377	chr4	1758421	1759100	+	0	NA	Intergenic	Intergenic	-34533	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
234188	chrX	12770521	12770850	+	0	NA	Intergenic	Intergenic	-20670	NM_001039091	5634		NM_002765	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
89193	chr16	88578451	88579780	+	0	NA	intron (NM_144604, intron 2 of 17)	intron (NM_144604, intron 2 of 17)	8712	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
188815	chr5	158856671	158857100	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	241071	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
151630	chr22	16403051	16403150	+	0	NA	Intergenic	(CCCTAA)n|Simple_repeat|Simple_repeat	189710	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
96004	chr17	39213851	39214700	+	0	NA	exon (NM_198993, exon 8 of 11)	exon (NM_198993, exon 8 of 11)	11670	NM_198993	342667		NM_198993	ENSG00000141750	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
169302	chr3	158643951	158645100	+	0	NA	promoter-TSS (NM_024996)	promoter-TSS (NM_024996)	-2	NR_164499	85476		NM_024996	ENSG00000168827	GFM1	COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1|mtEF-G1	G elongation factor mitochondrial 1	protein-coding
180110	chr5	1271851	1272150	+	0	NA	intron (NM_001193376, intron 7 of 14)	intron (NM_001193376, intron 7 of 14)	23068	NM_198253	7015		NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
232394	chr9	135981171	135981730	+	0	NA	Intergenic	CpG	-20077	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
109813	chr19	1162321	1163050	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	11583	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
4135	chr1	19331471	19332350	+	0	NA	non-coding (NR_109848, exon 10 of 10)	non-coding (NR_109848, exon 10 of 10)	19584	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
228745	chr9	110030271	110030450	+	0	NA	intron (NM_147150, intron 7 of 9)	LTR48B|LTR|ERV1	-18238	NM_001004065	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
143750	chr20	32368821	32369200	+	0	NA	intron (NM_001164603, intron 2 of 3)	intron (NM_001164603, intron 2 of 3)	9945	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
91600	chr17	5283901	5284300	+	0	NA	intron (NM_001291581, intron 1 of 16)	intron (NM_001291581, intron 1 of 16)	1816	NM_001083585	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
144230	chr20	34397101	34397300	+	0	NA	intron (NM_001257138, intron 3 of 23)	AluSg7|SINE|Alu	33927	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
2294	chr1	8966651	8967030	+	0	NA	intron (NM_001270502, intron 3 of 5)	intron (NM_001270502, intron 3 of 5)	20972	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
45990	chr11	121501651	121502150	+	0	NA	intron (NM_003105, intron 6 of 47)	L1MB7|LINE|L1	-20111	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
46171	chr11	123102971	123103580	+	0	NA	intron (NM_024769, intron 1 of 6)	intron (NM_024769, intron 1 of 6)	-41139	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
13952	chr1	120353671	120353830	+	0	NA	Intergenic	LTR8|LTR|ERV1	-61277	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
66588	chr14	63512051	63512450	+	0	NA	intron (NM_006246, intron 2 of 13)	intron (NM_006246, intron 2 of 13)	-4012	NM_001282182	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
119205	chr19	39443971	39444130	+	0	NA	Intergenic	AluY|SINE|Alu	-1496	NM_001130825	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
142198	chr20	3011451	3011750	+	0	NA	intron (NM_080841, intron 11 of 23)	L2b|LINE|L2	-32022	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
184061	chr5	91641771	91641930	+	0	NA	Intergenic	Intergenic	-258533	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
66312	chr14	61411601	61412750	+	0	NA	intron (NM_006255, intron 2 of 13)	L1MEc|LINE|L1	90732	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
49856	chr12	34170721	34170800	+	0	NA	Intergenic	AluY|SINE|Alu	148264	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
79557	chr16	973301	973750	+	0	NA	intron (NM_001352017, intron 1 of 11)	L1MB5|LINE|L1	-2526	NM_001352020	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
70648	chr14	102930001	102930930	+	0	NA	exon (NM_030943, exon 11 of 12)	exon (NM_030943, exon 11 of 12)	7802	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
154231	chr22	31552621	31553650	+	0	NA	intron (NM_001007467, intron 6 of 32)	AluJr|SINE|Alu	56599	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
179253	chr4	174604371	174604530	+	0	NA	Intergenic	Intergenic	-81552	NM_001256307	3248		NM_000860	ENSG00000164120	HPGD	15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1	15-hydroxyprostaglandin dehydrogenase	protein-coding
153751	chr22	29332551	29332650	+	0	NA	TTS (NR_003686)	TTS (NR_003686)	658	NR_003686	100113380		NR_003686	ENSG00000239127	SNORD125	-	small nucleolar RNA, C/D box 125	snoRNA
216298	chr8	12600771	12601800	+	0	NA	non-coding (NR_047662, exon 6 of 9)	non-coding (NR_047662, exon 6 of 9)	64326	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
187235	chr5	141338751	141338850	+	0	NA	promoter-TSS (NM_018915)	promoter-TSS (NM_018915)	40	NM_032009	56113		NM_018915	ENSG00000081853	PCDHGA2	PCDH-GAMMA-A2	protocadherin gamma subfamily A, 2	protein-coding
46878	chr11	133967251	133968330	+	0	NA	Intergenic	Intergenic	-10822	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
78374	chr15	91491101	91491580	+	0	NA	intron (NR_110106, intron 3 of 3)	intron (NR_110106, intron 3 of 3)	28001	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
45965	chr11	121452801	121453350	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	761	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
220271	chr8	97736021	97737000	+	0	NA	Intergenic	Intergenic	-39278	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
157065	chr22	42594801	42595250	+	0	NA	intron (NM_001278657, intron 6 of 8)	MER68|LTR|ERVL	-13014	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
32554	chr10	103359801	103360230	+	0	NA	Intergenic	AluYe5|SINE|Alu	-7961	NM_139052	6877		NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
207322	chr7	44041951	44042250	+	0	NA	intron (NR_015401, intron 2 of 2)	AluSc|SINE|Alu	-1477	NR_024116	401331		NR_024116		RASA4CP	RASA4P	RAS p21 protein activator 4C, pseudogene	pseudo
77562	chr15	84878521	84878850	+	0	NA	Intergenic	Intergenic	-5976	NM_001287761	9154		NM_004213	ENSG00000156222	SLC28A1	CNT1|HCNT1|URCTU	solute carrier family 28 member 1	protein-coding
167546	chr3	129339271	129339800	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-23249	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
49391	chr12	22437321	22437730	+	0	NA	Intergenic	L1PB1|LINE|L1	-102811	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
75354	chr15	65528201	65528800	+	0	NA	Intergenic	Intergenic	-1963	NM_016395	51495		NM_016395	ENSG00000074696	HACD3	B-IND1|BIND1|HSPC121|PTPLAD1	3-hydroxyacyl-CoA dehydratase 3	protein-coding
193295	chr6	30074401	30074800	+	0	NA	intron (NM_025236, intron 1 of 3).6	intron (NM_025236, intron 1 of 3).6	1249	NM_170769	80352		NM_025236	ENSG00000204618	RNF39	FAP216|HZF|HZFW|LIRF	ring finger protein 39	protein-coding
141709	chr2	241845271	241845430	+	0	NA	Intergenic	Intergenic	13544	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
183551	chr5	80119201	80119400	+	0	NA	intron (NR_126061, intron 11 of 13)	intron (NR_126061, intron 11 of 13)	-35635	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
84971	chr16	31423601	31423800	+	0	NA	intron (NM_001318185, intron 26 of 29)	intron (NM_001318185, intron 26 of 29)	4660	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
190482	chr5	180296321	180296980	+	0	NA	Intergenic	L1MC3|LINE|L1	-4567	NM_001135044	5601		NM_002752	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
81946	chr16	11813371	11814250	+	0	NA	Intergenic	Intergenic	15022	NR_131217	400500		NR_024049	ENSG00000262117	BCAR4	-	breast cancer anti-estrogen resistance 4	ncRNA
177173	chr4	108154271	108154630	+	0	NA	intron (NM_016269, intron 3 of 11)	(A)n|Simple_repeat|Simple_repeat	12347	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
51694	chr12	53175021	53175280	+	0	NA	intron (NM_015989, intron 2 of 16)	intron (NM_015989, intron 2 of 16)	5496	NM_015989	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
106438	chr18	13610701	13611530	+	0	NA	promoter-TSS (NM_001003675)	promoter-TSS (NM_001003675)	1	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
142166	chr20	2838921	2839300	+	0	NA	intron (NM_022760, intron 3 of 7)	intron (NM_022760, intron 3 of 7)	1545	NM_022760	64773		NM_022760	ENSG00000132635	PCED1A	C20orf81|FAM113A|bA12M19.1	PC-esterase domain containing 1A	protein-coding
32042	chr10	101038301	101038800	+	0	NA	intron (NM_030971, intron 9 of 11)	intron (NM_030971, intron 9 of 11)	7311	NM_030971	81855		NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3|SLC56A3	sideroflexin 3	protein-coding
6284	chr1	27603401	27604700	+	0	NA	promoter-TSS (NM_001371928)	promoter-TSS (NM_001371928)	94	NM_001371928	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
84302	chr16	30089451	30090350	+	0	NA	intron (NM_004608, intron 3 of 8)	AluSx4|SINE|Alu	2024	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
204411	chr7	3091471	3091830	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-47783	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
121141	chr19	46261051	46261350	+	0	NA	Intergenic	Intergenic	31458	NM_198541	374918		NM_198541	ENSG00000188293	IGFL1	APRG644|UNQ644	IGF like family member 1	protein-coding
216266	chr8	12450771	12451130	+	0	NA	intron (NR_040092, intron 4 of 5)	MLT1K|LTR|ERVL-MaLR	13937	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
211793	chr7	107725121	107725530	+	0	NA	Intergenic	Intergenic	18307	NR_144536	101927974		NR_144536	ENSG00000241764	CBLL1-AS1	-	CBLL1 antisense RNA 1	ncRNA
221991	chr8	130005021	130005580	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	3153	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
213120	chr7	131329271	131329800	+	0	NA	intron (NM_001321316, intron 1 of 17)	intron (NM_001321316, intron 1 of 17)	1659	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
174340	chr4	38686901	38687100	+	0	NA	intron (NM_016531, intron 2 of 5)	intron (NM_016531, intron 2 of 5)	-22372	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
56090	chr12	110678501	110678900	+	0	NA	intron (NM_001256413, intron 2 of 6)	AluJb|SINE|Alu	10415	NM_032369	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
125857	chr2	24502921	24503650	+	0	NA	intron (NM_001362954, intron 1 of 23)	intron (NM_001362954, intron 1 of 23)	11408	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
113626	chr19	10323071	10323850	+	0	NA	exon (NM_001366174, exon 4 of 14)	exon (NM_001366174, exon 4 of 14)	-7445	NM_001031734	112812		NM_080665	ENSG00000267673	FDX2	FDX1L|MEOAL	ferredoxin 2	protein-coding
174875	chr4	48740471	48741230	+	0	NA	intron (NM_015030, intron 1 of 63)	L1MC1|LINE|L1	39429	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
148607	chr21	5129901	5130130	+	0	NA	TTS (NM_001368238)	TTS (NM_001368238)	-1646	NM_001363758	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
206109	chr7	27213001	27213780	+	0	NA	Intergenic	CpG	12969	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
153939	chr22	30337771	30338330	+	0	NA	intron (NM_005877, intron 11 of 15)	intron (NM_005877, intron 11 of 15)	-11109	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
54229	chr12	80149421	80149680	+	0	NA	intron (NM_001368062, intron 5 of 62)	L1PA3|LINE|L1	50013	NM_001378610	283310		NM_173591	ENSG00000165899	OTOGL	C12orf64|DFNB84B	otogelin like	protein-coding
136107	chr2	173925951	173926250	+	0	NA	intron (NM_001172712, intron 4 of 6)	intron (NM_001172712, intron 4 of 6)	37780	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
204597	chr7	5304071	5304600	+	0	NA	3' UTR (NM_001300847, exon 11 of 11)	3' UTR (NM_001300847, exon 11 of 11)	21392	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
98110	chr17	45617871	45618250	+	0	NA	Intergenic	Intergenic	-2269	NR_138259	147081		NM_152466	ENSG00000293460	LINC02210	C17orf69|CRHR1-IT1	long intergenic non-protein coding RNA 2210	ncRNA
134599	chr2	144326621	144327130	+	0	NA	intron (NM_001376310, intron 1 of 13)	intron (NM_001376310, intron 1 of 13)	5359	NM_001376318	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
43885	chr11	88353651	88354400	+	0	NA	Intergenic	Intergenic	-16289	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
77291	chr15	82299571	82299730	+	0	NA	intron (NR_045529, intron 2 of 23)	intron (NR_045529, intron 2 of 23)	6367	NR_045529	390660		NR_045529	ENSG00000274376	ADAMTS7P1	ADAMTS7P2	ADAMTS7 pseudogene 1	pseudo
168241	chr3	141376771	141377300	+	0	NA	intron (NM_001376119, intron 2 of 3)	intron (NM_001376119, intron 2 of 3)	-7770	NM_001376143	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
194647	chr6	33598351	33599100	+	0	NA	Intergenic	AluSp|SINE|Alu	-5387	NR_027908	401253		NM_207497	ENSG00000197251	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
211694	chr7	106731201	106731400	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-70142	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
86425	chr16	66876851	66877150	+	0	NA	Intergenic	AluJb|SINE|Alu	-3515	NM_001329931	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
186622	chr5	138538021	138538600	+	0	NA	intron (NM_001291975, intron 2 of 11)	AluSz|SINE|Alu	3401	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
122459	chr19	49510921	49512100	+	0	NA	Intergenic	AluJo|SINE|Alu	-1151	NM_001136019	2217		NM_004107	ENSG00000104870	FCGRT	FCRN|FcgammaRn|alpha-chain	Fc gamma receptor and transporter	protein-coding
80071	chr16	1985821	1986730	+	0	NA	3' UTR (NM_005262, exon 3 of 3)	3' UTR (NM_005262, exon 3 of 3)	2082	NM_005262	2671		NM_005262	ENSG00000127554	GFER	ALR|ERV1|HERV1|HPO|HPO1|HPO2|HSS|MMCHD|MPMCD	growth factor, augmenter of liver regeneration	protein-coding
56065	chr12	110576551	110576850	+	0	NA	intron (NM_139283, intron 1 of 5)	L1MB7|LINE|L1	6618	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
84748	chr16	30956971	30958400	+	0	NA	promoter-TSS (NM_014712)	promoter-TSS (NM_014712)	-69	NM_014712	9739		NM_014712	ENSG00000099381	SETD1A	EPEDD|EPEO2|KMT2F|NEDSID|Set1|Set1A	SET domain containing 1A, histone lysine methyltransferase	protein-coding
229102	chr9	114383801	114384700	+	0	NA	intron (NM_030767, intron 1 of 21)	intron (NM_030767, intron 1 of 21)	3732	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
160775	chr3	32818221	32818650	+	0	NA	exon (NM_001039111, exon 1 of 4)	exon (NM_001039111, exon 1 of 4)	438	NM_001039111	131405		NM_001039111	ENSG00000206557	TRIM71	HYC4|HYDCC1|LIN-41|LIN41	tripartite motif containing 71	protein-coding
67616	chr14	72893001	72895400	+	0	NA	promoter-TSS (NM_012074)	promoter-TSS (NM_012074)	-84	NM_001280543	8110		NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4|SMARCG3	double PHD fingers 3	protein-coding
156388	chr22	41103201	41104000	+	0	NA	intron (NM_001362843, intron 1 of 29)	L2c|LINE|L2	11008	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
144017	chr20	33442251	33442550	+	0	NA	intron (NM_003098, intron 1 of 7)	intron (NM_003098, intron 1 of 7)	1363	NM_003098	6640		NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	syntrophin alpha 1	protein-coding
224246	chr9	5869801	5870000	+	0	NA	Intergenic	Intergenic	-20989	NM_005511	2315		NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
961	chr1	1775571	1776200	+	0	NA	intron (NM_001353641, intron 1 of 11)	intron (NM_001353641, intron 1 of 11)	2585	NM_023018	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
148957	chr21	10692551	10692920	+	0	NA	Intergenic	(TTCCA)n|Simple_repeat|Simple_repeat	171152	NM_199259	7179		NM_199259	ENSG00000274391	TPTE	CT44|PTEN2|TPTE1	transmembrane phosphatase with tensin homology	protein-coding
150167	chr21	39175271	39175650	+	0	NA	TTS (NM_001320795)	TTS (NM_001320795)	7991	NM_003720	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
172520	chr4	2284171	2284630	+	0	NA	intron (NM_020972, intron 8 of 12)	intron (NM_020972, intron 8 of 12)	-22291	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
31863	chr10	100046101	100046600	+	0	NA	intron (NM_001308, intron 8 of 8)	AluJo|SINE|Alu	35519	NM_001308	1369		NM_001308	ENSG00000120054	CPN1	CPN|SCPN	carboxypeptidase N subunit 1	protein-coding
236735	chrX	78132021	78132650	+	0	NA	intron (NM_015975, intron 6 of 6)	L1MA7|LINE|L1	7315	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
215880	chr8	7783501	7784210	+	0	NA	Intergenic	Intergenic	-2441	NM_001282479	100131608		NM_001282479	ENSG00000255251	PRR23D1	PRR23D2	proline rich 23 domain containing 1	protein-coding
63575	chr14	20457901	20458550	+	0	NA	TTS (NM_001244249)	TTS (NM_001244249)	2999	NM_001641	328		NM_001641	ENSG00000100823	APEX1	APE|APE1|APEN|APEX|APX|HAP1|REF1	apurinic/apyrimidinic endodeoxyribonuclease 1	protein-coding
52496	chr12	56022921	56023180	+	0	NA	intron (NM_001351092, intron 1 of 6)	AluY|SINE|Alu	2007	NM_022465	64375		NM_022465	ENSG00000123411	IKZF4	EOS|ZNFN1A4	IKAROS family zinc finger 4	protein-coding
86373	chr16	66562471	66563330	+	0	NA	intron (NM_001204099, intron 2 of 3)	AluSz6|SINE|Alu	-3539	NM_181268	113540		NM_052999	ENSG00000089505	CMTM1	CKLFH|CKLFH1|CKLFSF1	CKLF like MARVEL transmembrane domain containing 1	protein-coding
202293	chr6	157197351	157197650	+	0	NA	intron (NM_001371656, intron 17 of 20)	intron (NM_001371656, intron 17 of 20)	126019	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
142007	chr20	1556021	1556280	+	0	NA	intron (NM_178460, intron 1 of 3)	MLT1E1|LTR|ERVL-MaLR	1555	NM_178460	128646		NM_178460	ENSG00000125900	SIRPD	PTPNS1L2|dJ576H24.4	signal regulatory protein delta	protein-coding
98770	chr17	48120251	48120550	+	0	NA	intron (NM_152244, intron 7 of 7)	AluSx1|SINE|Alu	12634	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
82381	chr16	16061671	16062250	+	0	NA	intron (NM_004996, intron 12 of 30)	AluSz|SINE|Alu	112344	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
214895	chr7	151432171	151432330	+	0	NA	intron (NM_001308292, intron 2 of 2)	CpG	1389	NR_037468	100500835		NR_037468	ENSG00000265810	MIR3907	-	microRNA 3907	ncRNA
44477	chr11	105036451	105036700	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-1418	NM_033295	834		NM_001223	ENSG00000137752	CASP1	ICE|IL1BC|P45	caspase 1	protein-coding
62497	chr13	99422321	99422780	+	0	NA	Intergenic	Intergenic	66419	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
238799	chrX	154389201	154391480	+	0	NA	Intergenic	CpG	-7725	NM_001303625	6134		NM_006013	ENSG00000147403	RPL10	AUTSX5|DXS648|DXS648E|L10|MRXS35|NOV|QM|uL16	ribosomal protein L10	protein-coding
6291	chr1	27612671	27612830	+	0	NA	3' UTR (NM_005248, exon 13 of 13)	3' UTR (NM_005248, exon 13 of 13)	-8606	NM_001371928	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
108797	chr18	77671601	77671800	+	0	NA	Intergenic	Intergenic	322027	NR_104127	101927715		NR_104127	ENSG00000265843	LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
135665	chr2	168469221	168469680	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	13178	NM_001256126	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
146322	chr20	49223321	49224150	+	0	NA	intron (NM_017895, intron 4 of 20)	AluSz6|SINE|Alu	4319	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
177645	chr4	121221621	121222280	+	0	NA	intron (NM_001244764, intron 1 of 12)	intron (NM_001244764, intron 1 of 12)	-5323	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
57617	chr12	122495521	122496150	+	0	NA	intron (NM_001350936, intron 1 of 12)	AluSg|SINE|Alu	5097	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
77465	chr15	84444251	84444350	+	0	NA	intron (NR_158192, intron 1 of 5)	CpG	854	NR_158192	102724135		NR_158192		LOC102724135	-	uncharacterized LOC102724135	pseudo
81816	chr16	11555801	11556030	+	0	NA	intron (NM_004862, intron 2 of 3)	MIR|SINE|MIR	-28668	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
90568	chr17	1519401	1519600	+	0	NA	3' UTR (NM_006224, exon 12 of 12)	3' UTR (NM_006224, exon 12 of 12)	2581	NR_028514	100306951		NR_028514	ENSG00000236618	PITPNA-AS1	-	PITPNA antisense RNA 1	ncRNA
160144	chr3	20067201	20068030	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	27169	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
117943	chr19	33194301	33195300	+	0	NA	exon (NM_002333, exon 1 of 7)	exon (NM_002333, exon 1 of 7)	470	NM_002333	4037		NM_002333	ENSG00000130881	LRP3	-	LDL receptor related protein 3	protein-coding
188307	chr5	151173971	151174400	+	0	NA	Intergenic	Intergenic	-16406	NM_001363114	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
219506	chr8	73973451	73973550	+	0	NA	Intergenic	AluSz|SINE|Alu	-1213	NM_001204857	6921		NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
197877	chr6	89118851	89119230	+	0	NA	promoter-TSS (NM_001376898)	promoter-TSS (NM_001376898)	-969	NM_080743	135295		NM_080743	ENSG00000154548	SRSF12	SFRS13B|SFRS19|SRrp35	serine and arginine rich splicing factor 12	protein-coding
4210	chr1	19455651	19456150	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	28395	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
32235	chr10	101832571	101832900	+	0	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	7136	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
90739	chr17	2027621	2028280	+	0	NA	Intergenic	MIRc|SINE|MIR	-2162	NM_001346574	1801		NM_001383	ENSG00000108963	DPH1	DEDSSH|DPH2L|DPH2L1|OVCA1	diphthamide biosynthesis 1	protein-coding
91973	chr17	7410071	7410230	+	0	NA	intron (NM_020795, intron 1 of 6)	intron (NM_020795, intron 1 of 6)	2305	NM_020795	57555		NM_020795	ENSG00000169992	NLGN2	-	neuroligin 2	protein-coding
171674	chr3	197730301	197731080	+	0	NA	intron (NM_001145642, intron 1 of 20)	LTR14A|LTR|ERVK	6214	NM_014687	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
69981	chr14	99946721	99947230	+	0	NA	Intergenic	Intergenic	-24447	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
1683	chr1	4267501	4267780	+	0	NA	Intergenic	Intergenic	-144411	NR_027088	284661		NR_027088	ENSG00000235054	LINC01777	-	long intergenic non-protein coding RNA 1777	ncRNA
77490	chr15	84600251	84601730	+	0	NA	promoter-TSS (NM_001007072)	promoter-TSS (NM_001007072)	-19	NM_001007072	54993		NM_017894	ENSG00000176371	ZSCAN2	ZFP29|ZNF854	zinc finger and SCAN domain containing 2	protein-coding
31203	chr10	91227471	91228080	+	0	NA	non-coding (NR_046310, exon 3 of 3)	non-coding (NR_046310, exon 3 of 3)	7112	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
140286	chr2	232350101	232350300	+	0	NA	Intergenic	Intergenic	-28551	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
88549	chr16	85464071	85464230	+	0	NA	Intergenic	Intergenic	-147259	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
26342	chr10	15209821	15210600	+	0	NA	Intergenic	Intergenic	-41517	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
8931	chr1	44030901	44032030	+	0	NA	promoter-TSS (NM_001328626)	promoter-TSS (NM_001328626)	-3	NM_001328630	6536		NM_006934	ENSG00000196517	SLC6A9	GCENSG|GLYT1	solute carrier family 6 member 9	protein-coding
51408	chr12	52004071	52004830	+	0	NA	Intergenic	MIR3|SINE|MIR	-2496	NM_181711	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
30398	chr10	78320421	78320930	+	0	NA	Intergenic	Intergenic	53333	NR_073447	414243		NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
147109	chr20	53903601	53903800	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-27991	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
154583	chr22	36272971	36273130	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	13857	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
51160	chr12	50170351	50171300	+	0	NA	Intergenic	AluYa5|SINE|Alu	-3292	NM_001281731	91012		NM_147190	ENSG00000139624	CERS5	LASS5|Trh4	ceramide synthase 5	protein-coding
130638	chr2	86097401	86097600	+	0	NA	intron (NM_015425, intron 3 of 33)	L1MA5A|LINE|L1	8386	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
228402	chr9	99162721	99163080	+	0	NA	Intergenic	Intergenic	57787	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
150006	chr21	37064151	37064250	+	0	NA	Intergenic	AluSx1|SINE|Alu	8603	NM_153681	51227		NM_016430	ENSG00000185808	PIGP	DCRC|DCRC-S|DEE55|DSCR5|DSRC|EIEE55|PIG-P	phosphatidylinositol glycan anchor biosynthesis class P	protein-coding
202401	chr6	157868121	157868380	+	0	NA	intron (NM_016224, intron 2 of 17)	L4_C_Mam|LINE|RTE-X	45004	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
101699	chr17	68464701	68465250	+	0	NA	intron (NM_001278433, intron 1 of 10)	AluY|SINE|Alu	-7451	NR_135470	55062		NM_017983	ENSG00000070540	WIPI1	ATG18|ATG18A|WIPI49	WD repeat domain, phosphoinositide interacting 1	protein-coding
124827	chr2	7723771	7724500	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	175520	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
231697	chr9	131716101	131716500	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-6458	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
120329	chr19	43532571	43533500	+	0	NA	promoter-TSS (NM_174945)	promoter-TSS (NM_174945)	-153	NM_174945	284346		NM_174945	ENSG00000176472	ZNF575	-	zinc finger protein 575	protein-coding
127741	chr2	43578271	43578430	+	0	NA	intron (NR_144316, intron 9 of 36)	AluJr|SINE|Alu	17624	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
168374	chr3	141907421	141907800	+	0	NA	intron (NM_001679, intron 3 of 6)	AluSq2|SINE|Alu	30967	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
152287	chr22	20307071	20307730	+	0	NA	Intergenic	Intergenic	12660	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
63472	chr13	114147371	114147530	+	0	NA	Intergenic	CpG	-14827	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
9415	chr1	47708601	47709050	+	0	NA	Intergenic	CpG	270781	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
136066	chr2	172943571	172944130	+	0	NA	intron (NM_001282901, intron 1 of 24)	intron (NM_001282901, intron 1 of 24)	15698	NM_001282901	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
179748	chr5	241721	242180	+	0	NA	intron (NM_001330758, intron 11 of 12)	intron (NM_001330758, intron 11 of 12)	23630	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
217193	chr8	26322751	26323200	+	0	NA	intron (NM_002717, intron 2 of 9)	L2a|LINE|L2	29759	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
26708	chr10	22657151	22657330	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	56868	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
51195	chr12	50506751	50507180	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	1980	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
171773	chr4	56251	56830	+	0	NA	intron (NM_001286053, intron 1 of 1)	LTR70|LTR|ERV1	3219	NM_182524	152687		NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding
116104	chr19	17294101	17294880	+	0	NA	exon (NM_024527, exon 4 of 5)	exon (NM_024527, exon 4 of 5)	-8375	NM_001382342	64981		NM_023937	ENSG00000130312	MRPL34	L34mt|bL34m	mitochondrial ribosomal protein L34	protein-coding
96346	chr17	40065821	40066130	+	0	NA	intron (NM_199334, intron 1 of 8)	intron (NM_199334, intron 1 of 8)	3010	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
126151	chr2	26189651	26189950	+	0	NA	TTS (NM_001191033)	TTS (NM_001191033)	9084	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
1716	chr1	5637271	5637430	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	225391	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
28329	chr10	46525151	46525550	+	0	NA	Intergenic	Intergenic	31066	NM_014696	9721		NM_014696	ENSG00000204175	GPRIN2	GRIN2|KIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding
135801	chr2	169842171	169842530	+	0	NA	intron (NM_172070, intron 1 of 38)	LTR12C|LTR|ERV1	14896	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
86522	chr16	67156371	67156530	+	0	NA	intron (NM_001323552, intron 2 of 4)	intron (NM_001323552, intron 2 of 4)	3459	NM_003789	8717		NM_003789	ENSG00000102871	TRADD	Hs.89862	TNFRSF1A associated via death domain	protein-coding
109286	chr19	549921	550730	+	0	NA	TTS (NM_005317)	TTS (NM_005317)	6272	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
69792	chr14	99193001	99193600	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	78897	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
79932	chr16	1741051	1742030	+	0	NA	intron (NM_015133, intron 4 of 31)	intron (NM_015133, intron 4 of 31)	6555	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
239005	chrX	156025001	156025400	+	0	NA	TTS (NR_110561)	TTS (NR_110561)	2983	NR_110561	727856		NR_110561		DDX11L16	-	DEAD/H-box helicase 11 like 16 (pseudogene)	pseudo
2612	chr1	10034971	10035830	+	0	NA	intron (NM_001105562, intron 1 of 27)	AluY|SINE|Alu	2442	NM_006048	10277		NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
72755	chr15	39626621	39627030	+	0	NA	intron (NM_001324338, intron 10 of 11)	THE1D|LTR|ERVL-MaLR	45746	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
190726	chr6	317721	318180	+	0	NA	intron (NR_104473, intron 3 of 5)	intron (NR_104473, intron 3 of 5)	25893	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
46711	chr11	128845371	128845930	+	0	NA	intron (NM_153764, intron 1 of 1)	intron (NM_153764, intron 1 of 1)	-3181	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
233858	chrX	1523371	1523750	+	0	NA	intron (NM_178129, intron 1 of 1)	L1MB5|LINE|L1	13625	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
73068	chr15	40912551	40912850	+	0	NA	Intergenic	Intergenic	5891	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
217342	chr8	27633551	27634200	+	0	NA	promoter-TSS (NM_016240)	promoter-TSS (NM_016240)	-27	NM_016240	51435		NM_016240	ENSG00000168077	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A member 3	protein-coding
116472	chr19	18098871	18100130	+	0	NA	promoter-TSS (NM_001290024)	promoter-TSS (NM_001290024)	-684	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
7824	chr1	36302101	36302300	+	0	NA	intron (NM_001321471, intron 12 of 12)	intron (NM_001321471, intron 12 of 12)	-4168	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
124545	chr2	368571	368730	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	52366	NR_146953	105373350		NR_146953		LINC01865	-	long intergenic non-protein coding RNA 1865	ncRNA
23395	chr1	228210021	228210630	+	0	NA	intron (NR_073154, intron 2 of 3)	intron (NR_073154, intron 2 of 3)	2195	NM_001098623	84033		NM_052843	ENSG00000154358	OBSCN	ARHGEF30|RHABDO1|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding
30156	chr10	74179321	74179980	+	0	NA	intron (NM_001369124, intron 1 of 9)	MER41B|LTR|ERV1	2887	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
29723	chr10	72082101	72083230	+	0	NA	intron (NM_014767, intron 2 of 11)	AluJb|SINE|Alu	5886	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
143578	chr20	31672301	31673030	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	34753	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
184783	chr5	110755751	110756050	+	0	NA	intron (NM_001303249, intron 6 of 7)	intron (NM_001303249, intron 6 of 7)	16893	NM_138773	91137		NM_138773	ENSG00000164209	SLC25A46	HMSN6B|PCH1E	solute carrier family 25 member 46	protein-coding
42183	chr11	67956821	67957600	+	0	NA	Intergenic	L2a|LINE|L2	46887	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
105161	chr17	82259821	82261230	+	0	NA	intron (NM_139062, intron 2 of 9)	intron (NM_139062, intron 2 of 9)	13175	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
122325	chr19	49142071	49142230	+	0	NA	intron (NR_103842, intron 19 of 28)	intron (NR_103842, intron 19 of 28)	13246	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
58384	chr12	131832471	131833230	+	0	NA	intron (NM_016155, intron 1 of 9)	intron (NM_016155, intron 1 of 9)	4457	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
136098	chr2	173892971	173893280	+	0	NA	Intergenic	AluJb|SINE|Alu	70755	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
103990	chr17	80035101	80036100	+	0	NA	intron (NM_019020, intron 1 of 11)	CpG	272	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
3128	chr1	12433471	12434700	+	0	NA	intron (NM_018156, intron 64 of 68)	intron (NM_018156, intron 64 of 68)	-73161	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
50692	chr12	48890751	48891580	+	0	NA	Intergenic	Intergenic	-12968	NM_033124	85478		NM_033124	ENSG00000139537	CCDC65	CFAP250|DRC2|FAP250|NYD-SP28	coiled-coil domain containing 65	protein-coding
161077	chr3	38114651	38115000	+	0	NA	intron (NM_001321153, intron 26 of 36)	intron (NM_001321153, intron 26 of 36)	22302	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
13537	chr1	115070021	115070480	+	0	NA	intron (NM_001308315, intron 2 of 6)	intron (NM_001308315, intron 2 of 6)	19250	NM_001308315	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
27646	chr10	32980271	32981380	+	0	NA	Intergenic	CpG	-22595	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
23360	chr1	228152301	228153530	+	0	NA	intron (NM_020435, intron 1 of 1)	intron (NM_020435, intron 1 of 1)	2985	NM_020435	57165		NM_020435	ENSG00000198835	GJC2	CX46.6|Cx47|GJA12|HLD2|LMPH1C|LMPHM3|PMLDAR|SPG44	gap junction protein gamma 2	protein-coding
228174	chr9	97386821	97387950	+	0	NA	Intergenic	Intergenic	9306	NR_026847	286359		NM_182600		LOC286359	-	uncharacterized LOC286359	ncRNA
183476	chr5	79256551	79256880	+	0	NA	intron (NM_152405, intron 1 of 10)	intron (NM_152405, intron 1 of 10)	20584	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
120023	chr19	41946851	41946950	+	0	NA	Intergenic	Intergenic	12421	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
176278	chr4	87072371	87072830	+	0	NA	intron (NM_001313959, intron 3 of 19)	AluSx1|SINE|Alu	65599	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
220344	chr8	99168121	99168400	+	0	NA	intron (NM_152564, intron 15 of 61)	intron (NM_152564, intron 15 of 61)	154986	NM_015243	157680		NM_015243	ENSG00000132549	VPS13B	BLTP5B|CHS1|COH1	vacuolar protein sorting 13 homolog B	protein-coding
116565	chr19	18234701	18235100	+	0	NA	promoter-TSS (NM_001330172)	promoter-TSS (NM_001330172)	-521	NM_001330172	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
191524	chr6	11368651	11369000	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	13523	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
42728	chr11	72692251	72692350	+	0	NA	intron (NR_161388, intron 25 of 29)	L3|LINE|CR1	-8174	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
29881	chr10	72818171	72818430	+	0	NA	intron (NR_073062, intron 3 of 9)	intron (NR_073062, intron 3 of 9)	-75439	NM_152635	170392		NM_152635	ENSG00000138315	OIT3	LZP	oncoprotein induced transcript 3	protein-coding
103646	chr17	78763351	78763450	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	18808	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
84556	chr16	30573471	30573630	+	0	NA	Intergenic	L2b|LINE|L2	-1143	NM_001024683	146542		NM_145271	ENSG00000229809	ZNF688	-	zinc finger protein 688	protein-coding
219887	chr8	85654001	85654780	+	0	NA	TTS (NR_003594)	TTS (NR_003594)	1286	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
203140	chr6	166952401	166952680	+	0	NA	exon (NM_003730, exon 2 of 9)	exon (NM_003730, exon 2 of 9)	4010	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
198070	chr6	90233271	90233430	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	63493	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
37587	chr11	19311301	19311830	+	0	NA	Intergenic	Intergenic	-33671	NM_001111018	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
47519	chr12	4144801	4145330	+	0	NA	Intergenic	L2|LINE|L2	-128697	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
209316	chr7	76132051	76132150	+	0	NA	Intergenic	Intergenic	-23338	NR_135079	101927126		NR_135079		GTF2IP7	-	general transcription factor IIi pseudogene 7	pseudo
95750	chr17	38599901	38600880	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	5562	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
129850	chr2	72918701	72919430	+	0	NA	intron (NM_004097, intron 1 of 2)	CpG-16147	1546	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
53230	chr12	62335221	62335600	+	0	NA	3' UTR (NM_001252079, exon 7 of 7)	3' UTR (NM_001252079, exon 7 of 7)	75006	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
181331	chr5	40391251	40391350	+	0	NA	Intergenic	Intergenic	-288615	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
2281	chr1	8946551	8947980	+	0	NA	intron (NM_001270502, intron 1 of 5)	intron (NM_001270502, intron 1 of 5)	1397	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
65380	chr14	50726021	50726850	+	0	NA	TTS (NM_182944)	TTS (NM_182944)	-58129	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
181004	chr5	35831751	35832050	+	0	NA	Intergenic	Intergenic	-24991	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
15022	chr1	148321471	148321630	+	0	NA	Intergenic	L1PREC2|LINE|L1	13004	NR_049810	100847044		NR_049810	ENSG00000283676	MIR5087	-	microRNA 5087	ncRNA
83413	chr16	27223221	27224080	+	0	NA	Intergenic	Intergenic	19675	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
184684	chr5	108606271	108606450	+	0	NA	Intergenic	MER34C2|LTR|ERV1	121901	NR_046368	100652853		NR_046368		LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
212397	chr7	128107571	128108100	+	0	NA	Intergenic	Intergenic	25974	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
97642	chr17	44194471	44194630	+	0	NA	exon (NM_001382312, exon 12 of 13)	exon (NM_001382312, exon 12 of 13)	4819	NM_001382315	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
29188	chr10	68964171	68964900	+	0	NA	intron (NM_004728, intron 4 of 14)	AluSz|SINE|Alu	8095	NM_001256910	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
2907	chr1	11679171	11679630	+	0	NA	intron (NM_006341, intron 3 of 8)	intron (NM_006341, intron 3 of 8)	1748	NM_006341	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
219381	chr8	70400271	70400430	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	3040	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
30028	chr10	73794501	73795100	+	0	NA	intron (NM_015037, intron 14 of 25)	intron (NM_015037, intron 14 of 25)	6599	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
779	chr1	1533671	1533830	+	0	NA	intron (NM_018188, intron 15 of 15)	intron (NM_018188, intron 15 of 15)	6874	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
161226	chr3	39187071	39187230	+	0	NA	exon (NM_001198621, exon 2 of 3)	exon (NM_001198621, exon 2 of 3)	5445	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
31726	chr10	97689601	97689800	+	0	NA	Intergenic	Intergenic	-2459	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
116	chr1	490301	490700	+	0	NA	TTS (NR_028322)	TTS (NR_028322)	4945	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
14207	chr1	143186101	143186630	+	0	NA	Intergenic	Intergenic	236227	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
197658	chr6	85448971	85449800	+	0	NA	promoter-TSS (NM_001204813)	promoter-TSS (NM_001204813)	-199	NM_001204813	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
93683	chr17	19360221	19360680	+	0	NA	intron (NM_001368769, intron 1 of 6)	intron (NM_001368769, intron 1 of 6)	2273	NM_001321219	27077		NM_015681	ENSG00000108641	B9D1	B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1	B9 domain containing 1	protein-coding
134708	chr2	144503901	144504580	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-15374	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
139539	chr2	224646151	224646500	+	0	NA	Intergenic	Intergenic	-60928	NM_001257197	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
55528	chr12	105322421	105322680	+	0	NA	intron (NR_131986, intron 1 of 2)	intron (NR_131986, intron 1 of 2)	4467	NR_131986	105369954		NR_131986	ENSG00000257642	C12orf75-AS1	KCCAT198	C12orf75 antisense RNA 1	ncRNA
209537	chr7	77192571	77193250	+	0	NA	TTS (NM_006682)	TTS (NM_006682)	6909	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
74140	chr15	55252201	55252750	+	0	NA	intron (NM_183234, intron 1 of 6)	AluSz6|SINE|Alu	17811	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
212891	chr7	130883571	130884000	+	0	NA	intron (NR_034120, intron 3 of 3)	intron (NR_034120, intron 3 of 3)	-6246	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
35900	chr11	2411721	2412230	+	0	NA	intron (NM_014555, intron 16 of 23)	AluJb|SINE|Alu	11070	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
95270	chr17	35499571	35499930	+	0	NA	intron (NM_001363830, intron 2 of 4)	intron (NM_001363830, intron 2 of 4)	-12011	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
28099	chr10	43389871	43390030	+	0	NA	intron (NM_001098204, intron 3 of 3)	intron (NM_001098204, intron 3 of 3)	6881	NM_001098208	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
5045	chr1	24534701	24535600	+	0	NA	exon (NM_001251985, exon 2 of 2)	exon (NM_001251985, exon 2 of 2)	20836	NM_001251982	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
210430	chr7	100090101	100090680	+	0	NA	intron (NM_006833, intron 3 of 9)	intron (NM_006833, intron 3 of 9)	1421	NM_006833	10980		NM_006833	ENSG00000168090	COPS6	CSN6|MOV34-34KD	COP9 signalosome subunit 6	protein-coding
19780	chr1	182300801	182301230	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	13046	NR_104175	400799		NR_104175		LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
197908	chr6	89373271	89373430	+	0	NA	intron (NM_021244, intron 5 of 6)	AluSx4|SINE|Alu	-20628	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
181837	chr5	52945071	52945680	+	0	NA	intron (NM_181501, intron 27 of 28)	intron (NM_181501, intron 27 of 28)	-43977	NR_073107	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
18837	chr1	167687101	167688230	+	0	NA	intron (NM_052862, intron 3 of 6)	intron (NM_052862, intron 3 of 6)	-34317	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
18014	chr1	160563271	160563830	+	0	NA	intron (NM_001184882, intron 1 of 5)	L1PA11|LINE|L1	15946	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
54500	chr12	92092571	92092800	+	0	NA	intron (NR_132341, intron 1 of 4)	L1MC1|LINE|L1	49028	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
163097	chr3	50107521	50107980	+	0	NA	intron (NR_036627, intron 11 of 23)	AluSq2|SINE|Alu	-6762	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
75513	chr15	66473971	66474130	+	0	NA	intron (NM_002755, intron 5 of 10)	intron (NM_002755, intron 5 of 10)	22984	NR_039737	100616149		NR_039737	ENSG00000266589	MIR4512	-	microRNA 4512	ncRNA
34928	chr11	429401	429600	+	0	NA	intron (NM_001347882, intron 10 of 21)	intron (NM_001347882, intron 10 of 21)	-12103	NM_001135053	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
181496	chr5	42994501	42995630	+	0	NA	Intergenic	CpG	-1732	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
72275	chr15	30816571	30816950	+	0	NA	Intergenic	Intergenic	-1276	NR_072991	390561		NR_072991		HERC2P10	-	HERC2 pseudogene 10	pseudo
201018	chr6	141464521	141464800	+	0	NA	Intergenic	Intergenic	-668499	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
32313	chr10	102160421	102160680	+	0	NA	exon (NM_001284388, exon 10 of 13)	exon (NM_001284388, exon 10 of 13)	8161	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
187287	chr5	141567151	141568130	+	0	NA	intron (NM_005219, intron 17 of 27)	intron (NM_005219, intron 17 of 27)	9329	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
101970	chr17	74736371	74737200	+	0	NA	promoter-TSS (NM_001006638)	promoter-TSS (NM_001006638)	-35	NM_001163989	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
27428	chr10	31603351	31603950	+	0	NA	Intergenic	CpG	-203895	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
195832	chr6	41344921	41345380	+	0	NA	intron (NM_001199510, intron 5 of 5)	intron (NM_001199510, intron 5 of 5)	9542	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
128126	chr2	48325871	48326450	+	0	NA	intron (NM_001375452, intron 1 of 5)	L2b|LINE|L2	11478	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
215519	chr7	158728971	158729130	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-24246	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
228620	chr9	105608951	105609250	+	0	NA	intron (NR_147213, intron 7 of 9)	L2c|LINE|L2	50969	NM_001351496	2218		NM_006731	ENSG00000106692	FKTN	CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4	fukutin	protein-coding
141598	chr2	241634521	241634980	+	0	NA	intron (NM_015963, intron 1 of 5)	FRAM|SINE|Alu	2408	NM_015963	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
204405	chr7	3067221	3067950	+	0	NA	Intergenic	MER21C|LTR|ERVL	-23718	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
73994	chr15	52031801	52032000	+	0	NA	intron (NM_002748, intron 1 of 5)	intron (NM_002748, intron 1 of 5)	12681	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
205003	chr7	6463651	6464350	+	0	NA	intron (NM_001100603, intron 3 of 3)	AluSp|SINE|Alu	-15988	NM_001142936	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
143986	chr20	32965471	32966100	+	0	NA	Intergenic	Intergenic	38648	NM_080675	140732		NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding
41744	chr11	66677301	66679780	+	0	NA	promoter-TSS (NM_001286135)	promoter-TSS (NM_001286135)	-653	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
199755	chr6	125827001	125827480	+	0	NA	intron (NM_001199621, intron 2 of 14)	MSTD|LTR|ERVL-MaLR	-8382	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
59967	chr13	31930721	31931180	+	0	NA	intron (NR_027062, intron 1 of 3)	L2c|LINE|L2	84167	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
80263	chr16	2226221	2226530	+	0	NA	intron (NM_004424, intron 1 of 13)	intron (NM_004424, intron 1 of 13)	2784	NM_004424	1877		NM_004424	ENSG00000167967	E4F1	E4F	E4F transcription factor 1	protein-coding
208088	chr7	56099771	56100080	+	0	NA	Intergenic	AluJr|SINE|Alu	6551	NM_016139	51142		NM_016139	ENSG00000106153	CHCHD2	C7orf17|MIX17B|MNRR1|NS2TP|PARK22	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding
214722	chr7	151020421	151020980	+	0	NA	intron (NR_133652, intron 5 of 16)	intron (NR_133652, intron 5 of 16)	3799	NM_001317056	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
158103	chr22	50013421	50014400	+	0	NA	Intergenic	Intergenic	-1145	NM_001371416	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
181468	chr5	42078671	42078830	+	0	NA	Intergenic	L1PA3|LINE|L1	96595	NR_104635	101926960		NR_104635		LINC02996	-	long intergenic non-protein coding RNA 2996	ncRNA
173793	chr4	17619151	17619450	+	0	NA	intron (NM_025205, intron 1 of 3)	L2a|LINE|L2	4659	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
60341	chr13	40770801	40772000	+	0	NA	promoter-TSS (NM_005830)	promoter-TSS (NM_005830)	-210	NM_005830	10240		NM_005830	ENSG00000102738	MRPS31	IMOGN38|MRP-S31|S31mt|mS31	mitochondrial ribosomal protein S31	protein-coding
188665	chr5	157254701	157255030	+	0	NA	3' UTR (NM_005546, exon 17 of 17)	3' UTR (NM_005546, exon 17 of 17)	-11258	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
155188	chr22	37803821	37804150	+	0	NA	Intergenic	Intergenic	-1244	NM_005318	3005		NM_005318	ENSG00000189060	H1-0	H1.0|H10|H1F0|H1FV	H1.0 linker histone	protein-coding
63734	chr14	21219301	21219630	+	0	NA	intron (NM_001077443, intron 4 of 7)	L2a|LINE|L2	-12565	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
124321	chr19	58100071	58100330	+	0	NA	intron (NM_001145542, intron 1 of 6)	AluJb|SINE|Alu	-1837	NM_023926	65982		NM_023926	ENSG00000121413	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
67536	chr14	71049971	71050780	+	0	NA	intron (NM_014982, intron 22 of 35)	intron (NM_014982, intron 22 of 35)	142916	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
28127	chr10	43420101	43421850	+	0	NA	Intergenic	Intergenic	-3535	NR_145740	109616985		NR_145740	ENSG00000221400	SNORD3J	-	small nucleolar RNA, C/D box 3J	snoRNA
92884	chr17	16433001	16433430	+	0	NA	intron (NM_016113, intron 12 of 14)	intron (NM_016113, intron 12 of 14)	-5772	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
119211	chr19	39451271	39451880	+	0	NA	intron (NM_001111020, intron 2 of 29)	AluSx1|SINE|Alu	5927	NM_003169	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
76247	chr15	73993671	73993830	+	0	NA	promoter-TSS (NM_002675)	promoter-TSS (NM_002675)	872	NM_001324227	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
159291	chr3	12981751	12982150	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	5151	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
57952	chr12	123747171	123747530	+	0	NA	intron (NM_012463, intron 13 of 19)	intron (NM_012463, intron 13 of 19)	-14951	NM_001372106	196385		NM_207437	ENSG00000197653	DNAH10	SPGF56	dynein axonemal heavy chain 10	protein-coding
66043	chr14	58300771	58300930	+	0	NA	intron (NM_023000, intron 2 of 23)	intron (NM_023000, intron 2 of 23)	2295	NM_002892	5926		NM_002892	ENSG00000032219	ARID4A	RBBP-1|RBBP1|RBP-1|RBP1	AT-rich interaction domain 4A	protein-coding
106617	chr18	22344251	22345710	+	0	NA	Intergenic	Intergenic	72935	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
236619	chrX	74534501	74535000	+	0	NA	TTS (NM_006517)	TTS (NM_006517)	79874	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
16468	chr1	154611271	154611430	+	0	NA	intron (NM_001365046, intron 1 of 15)	X6A_LINE|LINE|CR1	-2553	NM_001365048	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
7574	chr1	35171701	35173480	+	0	NA	Intergenic	L1MB7|LINE|L1	20555	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
149290	chr21	28745021	28746030	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	139842	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
109764	chr19	1124501	1124930	+	0	NA	intron (NM_001100122, intron 2 of 28).2	intron (NM_001100122, intron 2 of 28).2	7506	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
141566	chr2	241542251	241542350	+	0	NA	Intergenic	CpG	-16445	NM_032515	666		NM_032515	ENSG00000176720	BOK	BCL2L9|BOKL	BCL2 family apoptosis regulator BOK	protein-coding
9360	chr1	47184151	47184900	+	0	NA	intron (NM_005764, intron 3 of 3)	intron (NM_005764, intron 3 of 3)	5275	NR_047498	100874253		NR_047498	ENSG00000224805	LINC00853	PDZK1IP1-AS1|ncRNA-a4	long intergenic non-protein coding RNA 853	ncRNA
205309	chr7	12170321	12170880	+	0	NA	Intergenic	L1PA7|LINE|L1	-40694	NM_018374	54664		NM_018374	ENSG00000106460	TMEM106B	HLD16	transmembrane protein 106B	protein-coding
103679	chr17	78797201	78797430	+	0	NA	non-coding (NR_169584, exon 22 of 23)	non-coding (NR_169584, exon 22 of 23)	-14973	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
33481	chr10	119078501	119078950	+	0	NA	intron (NM_003750, intron 1 of 21)	intron (NM_003750, intron 1 of 21)	2092	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
233677	chrX	1164521	1164900	+	0	NA	Intergenic	Intergenic	47939	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
135307	chr2	160299751	160299850	+	0	NA	intron (NM_016836, intron 6 of 13)	L2c|LINE|L2	-27905	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
29206	chr10	68986571	68986930	+	0	NA	Intergenic	Intergenic	-2053	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
16100	chr1	153626171	153626530	+	0	NA	exon (NM_001024213, exon 2 of 3)	exon (NM_001024213, exon 2 of 3)	698	NM_001024213	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
83849	chr16	28874821	28875680	+	0	NA	Intergenic	Intergenic	-3238	NM_004320	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
153828	chr22	29870701	29870980	+	0	NA	Intergenic	L2c|LINE|L2	-12329	NM_153050	8897		NM_021090	ENSG00000100330	MTMR3	FYVE-DSP1|ZFYVE10	myotubularin related protein 3	protein-coding
127412	chr2	42107301	42107650	+	0	NA	Intergenic	L2a|LINE|L2	59454	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
15392	chr1	150221271	150222250	+	0	NA	intron (NM_001280560, intron 4 of 4)	intron (NM_001280560, intron 4 of 4)	12918	NM_001136479	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
108542	chr18	74495481	74497150	+	0	NA	promoter-TSS (NM_018235)	promoter-TSS (NM_018235)	-48	NM_001370249	55748		NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	carnosine dipeptidase 2	protein-coding
122541	chr19	49643421	49644030	+	0	NA	intron (NM_021228, intron 1 of 10)	intron (NM_021228, intron 1 of 10)	1516	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
140663	chr2	233977551	233977650	+	0	NA	intron (NM_024080, intron 17 of 25)	intron (NM_024080, intron 17 of 25)	60227	NM_024080	79054		NM_024080	ENSG00000144481	TRPM8	LTRPC6|LTrpC-6|TRPP8|trp-p8	transient receptor potential cation channel subfamily M member 8	protein-coding
94594	chr17	29725951	29726250	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	35332	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
43350	chr11	76672351	76673730	+	0	NA	Intergenic	MIR|SINE|MIR	-2293	NM_001128922	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
42830	chr11	72869671	72869830	+	0	NA	intron (NM_014824, intron 12 of 19)	intron (NM_014824, intron 12 of 19)	55339	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
48482	chr12	9795571	9795830	+	0	NA	Intergenic	Intergenic	-4352	NR_159359	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
17431	chr1	156663951	156664250	+	0	NA	Intergenic	Intergenic	13307	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
237463	chrX	119758021	119759550	+	0	NA	exon (NM_001105576, exon 1 of 1)	exon (NM_001105576, exon 1 of 1)	197	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
183449	chr5	79133051	79133150	+	0	NA	TTS (NM_001713)	TTS (NM_001713)	21291	NM_001713	635		NM_001713	ENSG00000145692	BHMT	BHMT1|HEL-S-61p	betaine--homocysteine S-methyltransferase	protein-coding
142834	chr20	17533501	17533700	+	0	NA	intron (NM_001278608, intron 3 of 9)	MLT1H2|LTR|ERVL-MaLR	-2221	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
72622	chr15	38127551	38127650	+	0	NA	Intergenic	Intergenic	-54610	NR_147199	107984773		NR_147199	ENSG00000236914	LINC01852	-	long intergenic non-protein coding RNA 1852	ncRNA
235231	chrX	41379821	41380280	+	0	NA	Intergenic	AluSx|SINE|Alu	45884	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
173694	chr4	15649101	15649300	+	0	NA	intron (NM_012161, intron 1 of 10)	intron (NM_012161, intron 1 of 10)	6157	NM_012161	26234		NM_012161	ENSG00000118564	FBXL5	FBL4|FBL5|FLR1	F-box and leucine rich repeat protein 5	protein-coding
23025	chr1	226405301	226405830	+	0	NA	intron (NM_001618, intron 1 of 22)	AluSz|SINE|Alu	2528	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
236787	chrX	79116951	79117250	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-27588	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
98250	chr17	46174021	46174300	+	0	NA	intron (NM_001193465, intron 2 of 15)	Charlie1a|DNA|hAT-Charlie	18622	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
106789	chr18	23866771	23867280	+	0	NA	intron (NM_198129, intron 36 of 74)	intron (NM_198129, intron 36 of 74)	-5995	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
100290	chr17	59713921	59714280	+	0	NA	intron (NM_001329394, intron 1 of 11)	MSTC|LTR|ERVL-MaLR	6446	NM_001329401	81671		NM_030938	ENSG00000062716	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding
140764	chr2	234550521	234550850	+	0	NA	Intergenic	Intergenic	-53604	NM_001282431	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
34364	chr10	132232051	132232750	+	0	NA	intron (NM_173575, intron 2 of 11)	intron (NM_173575, intron 2 of 11)	16708	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
150494	chr21	42781451	42782350	+	0	NA	Intergenic	Intergenic	-1906	NR_135517	101928311		NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
99202	chr17	49552101	49552300	+	0	NA	intron (NR_103773, intron 1 of 2)	intron (NR_103773, intron 1 of 2)	21864	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
110414	chr19	1958551	1959130	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	-4291	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
39301	chr11	58597771	58597930	+	0	NA	intron (NM_053023, intron 2 of 10)	Tigger2|DNA|TcMar-Tigger	18736	NR_024091	386607		NM_170768		ZFP91-CNTF	ZFP91|ZNF757|Zfp-91	ZFP91-CNTF readthrough (NMD candidate)	ncRNA
144152	chr20	34049401	34049800	+	0	NA	TTS (NR_039911)	TTS (NR_039911)	481	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
188801	chr5	158000271	158000430	+	0	NA	Intergenic	MIRb|SINE|MIR	-141205	NM_001195555	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
197371	chr6	73475201	73475400	+	0	NA	intron (NM_133645, intron 4 of 12)	AluSq2|SINE|Alu	13563	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
129782	chr2	71226351	71227800	+	0	NA	promoter-TSS (NM_020459)	promoter-TSS (NM_020459)	28	NM_020459	400961		NM_020459	ENSG00000124374	PAIP2B	-	poly(A) binding protein interacting protein 2B	protein-coding
39972	chr11	62595001	62595200	+	0	NA	intron (NM_001330292, intron 14 of 17)	intron (NM_001330292, intron 14 of 17)	-3577	NM_022830	64852		NM_022830	ENSG00000149016	TUT1	PAPD2|RBM21|STARPAP|TENT1|TUTase|URLC6	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding
171120	chr3	195532121	195532380	+	0	NA	intron (NM_006241, intron 1 of 5)	AluJr|SINE|Alu	11075	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
109663	chr19	1016421	1016680	+	0	NA	intron (NM_033420, intron 1 of 9)	intron (NM_033420, intron 1 of 9)	4573	NM_001033026	91304		NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
10408	chr1	65252951	65253350	+	0	NA	Intergenic	L1MC4|LINE|L1	-11544	NM_001256865	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
166017	chr3	108296301	108296500	+	0	NA	promoter-TSS (NM_001282559)	promoter-TSS (NM_001282559)	-90	NM_001282559	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
53954	chr12	71868401	71868750	+	0	NA	intron (NM_001146214, intron 2 of 17)	intron (NM_001146214, intron 2 of 17)	-17592	NR_024072	729633		NR_024072		MRS2P2	-	MRS2 pseudogene 2	pseudo
163079	chr3	50083901	50084100	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-4919	NR_036627	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
64213	chr14	23058101	23059280	+	0	NA	TTS (NR_169511)	TTS (NR_169511)	1030	NR_169511	105370705		NR_169511	ENSG00000288795	LOC105370705	-	collagen alpha-2(I) chain-like	ncRNA
10160	chr1	61056001	61056200	+	0	NA	Intergenic	Intergenic	-21127	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
171218	chr3	195767251	195767950	+	0	NA	intron (NM_018406, intron 7 of 24)	(ACCACC)n|Simple_repeat|Simple_repeat	44329	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
59749	chr13	29961521	29962180	+	0	NA	Intergenic	AluSc8|SINE|Alu	25319	NR_033889	440131		NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
84625	chr16	30705021	30705330	+	0	NA	intron (NM_006662, intron 4 of 33)	AluSx|SINE|Alu	-5362	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
223173	chr8	143549251	143551100	+	0	NA	Intergenic	Intergenic	-3212	NM_001166237	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
74017	chr15	52174671	52175030	+	0	NA	intron (NM_016194, intron 3 of 12)	AluSx|SINE|Alu	4841	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
118482	chr19	35906851	35907430	+	0	NA	intron (NM_003332, intron 4 of 4)	intron (NM_003332, intron 4 of 4)	1155	NM_198125	7305		NM_003332	ENSG00000011600	TYROBP	DAP12|KARAP|PLOSL|PLOSL1	transmembrane immune signaling adaptor TYROBP	protein-coding
45595	chr11	118894851	118894950	+	0	NA	3' UTR (NM_001716, exon 2 of 2)	3' UTR (NM_001716, exon 2 of 2)	1508	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
231990	chr9	133341571	133341980	+	0	NA	3' UTR (NM_181491, exon 4 of 4)	3' UTR (NM_181491, exon 4 of 4)	-5587	NM_006753	6838		NM_006753	ENSG00000148296	SURF6	RRP14	surfeit 6	protein-coding
67732	chr14	73543151	73543250	+	0	NA	exon (NM_001037161, exon 3 of 3)	exon (NM_001037161, exon 3 of 3)	6057	NM_001037161	641371		NM_001037161	ENSG00000184227	ACOT1	ACH2|CTE-1|LACH2	acyl-CoA thioesterase 1	protein-coding
14719	chr1	145961401	145962200	+	0	NA	5' UTR (NM_001039888, exon 4 of 4)	5' UTR (NM_001039888, exon 4 of 4)	2775	NM_001039888	284615		NM_001039888	ENSG00000272031	ANKRD34A	ANKRD34	ankyrin repeat domain 34A	protein-coding
115255	chr19	14533151	14533250	+	0	NA	intron (NM_138501, intron 1 of 12)	AluSx|SINE|Alu	3606	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
196201	chr6	42748651	42748980	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	1828	NM_001318819	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
178288	chr4	145097821	145099430	+	0	NA	promoter-TSS (NM_001256710)	promoter-TSS (NM_001256710)	-84	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
111412	chr19	3774001	3774300	+	0	NA	Intergenic	Intergenic	-1922	NM_032753	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
151492	chr21	46321371	46321880	+	0	NA	promoter-TSS (NM_001286462)	promoter-TSS (NM_001286462)	-800	NM_001286462	54058		NM_058180	ENSG00000160298	C21orf58	-	chromosome 21 open reading frame 58	protein-coding
89228	chr16	88631171	88631330	+	0	NA	exon (NM_001294340, exon 19 of 19)	exon (NM_001294340, exon 19 of 19)	-7322	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
226184	chr9	64774801	64775600	+	0	NA	Intergenic	CpG	-29834	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
141762	chr2	242002901	242003300	+	0	NA	non-coding (NR_149023, exon 1 of 1)	non-coding (NR_149023, exon 1 of 1)	1891	NR_149023	285097		NM_178530	ENSG00000280119	LOC285097	-	uncharacterized FLJ38379	ncRNA
87355	chr16	70372671	70372830	+	0	NA	non-coding (NR_135296, exon 10 of 10)	non-coding (NR_135296, exon 10 of 10)	25847	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
101858	chr17	74206921	74207650	+	0	NA	intron (NM_000999, intron 3 of 4)	AluJr|SINE|Alu	3607	NM_001035258	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
175203	chr4	56650951	56651050	+	0	NA	intron (NM_001145460, intron 3 of 4)	intron (NM_001145460, intron 3 of 4)	5522	NM_139211	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
10195	chr1	61781271	61781880	+	0	NA	intron (NM_176877, intron 7 of 42)	intron (NM_176877, intron 7 of 42)	39095	NM_176877	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
45560	chr11	118786771	118787630	+	0	NA	intron (NM_004397, intron 1 of 13)	AluSg7|SINE|Alu	3748	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
108746	chr18	77110251	77110800	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	22258	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
196080	chr6	42290951	42291250	+	0	NA	intron (NM_033502, intron 4 of 17)	MIRb|SINE|MIR	-73239	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
7049	chr1	31954571	31955450	+	0	NA	Intergenic	Intergenic	-16642	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
215471	chr7	158331071	158331300	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	201628	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
176136	chr4	83114421	83115400	+	0	NA	promoter-TSS (NM_001130715)	promoter-TSS (NM_001130715)	-181	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
70917	chr14	104135251	104135350	+	0	NA	intron (NR_158217, intron 2 of 2)	intron (NR_158217, intron 2 of 2)	3329	NR_158217	105370708		NR_158217		KIF26A-DT	-	KIF26A divergent transcript	ncRNA
188350	chr5	151658751	151659250	+	0	NA	Intergenic	MIR3|SINE|MIR	-17945	NR_109873	101927096		NR_109873	ENSG00000249035	CLMAT3	CTB-113P19.1|SPARC-AS1	colorectal liver metastasis associated transcript 3	ncRNA
78204	chr15	90590501	90590700	+	0	NA	intron (NM_001042574, intron 2 of 14)	AluSx|SINE|Alu	60677	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
200456	chr6	135102801	135103880	+	0	NA	Intergenic	Intergenic	-48518	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
152051	chr22	19610421	19610950	+	0	NA	Intergenic	Intergenic	-43846	NR_024381	150185		NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
153	chr1	531151	532050	+	0	NA	Intergenic	Intergenic	-36155	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
39063	chr11	47975451	47975750	+	0	NA	Intergenic	AluJb|SINE|Alu	-4959	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
235423	chrX	45771371	45772020	+	0	NA	Intergenic	Intergenic	-24571	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
169063	chr3	153287321	153288000	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	125434	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
234025	chrX	3738501	3738700	+	0	NA	Intergenic	L1ME3B|LINE|L1	-24951	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
23870	chr1	234838271	234838430	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-78294	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
79430	chr16	702871	703500	+	0	NA	intron (NM_153350, intron 1 of 5)	intron (NM_153350, intron 1 of 5)	2616	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
229169	chr9	114513621	114514130	+	0	NA	Intergenic	Intergenic	-8402	NM_015404	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
8628	chr1	41682801	41683490	+	0	NA	intron (NM_001127714, intron 1 of 7)	L2c|LINE|L2	-198462	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
85787	chr16	56945121	56945930	+	0	NA	TTS (NM_001272103)	TTS (NM_001272103)	13383	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
131140	chr2	91506151	91506330	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	153709	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
142050	chr20	1802401	1802850	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-22879	NR_037142	100289473		NR_037142	ENSG00000293374	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
231646	chr9	131624601	131625000	+	0	NA	intron (NM_001377935, intron 10 of 26)	intron (NM_001377935, intron 10 of 26)	26603	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
13251	chr1	112706911	112708380	+	0	NA	promoter-TSS (NM_001042679)	promoter-TSS (NM_001042679)	-242	NM_001042678	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
24794	chr1	248945201	248946400	+	0	NA	Intergenic	(AGGGTT)n|Simple_repeat|Simple_repeat	39557	NM_001017434	267002		NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
74834	chr15	63501171	63501800	+	0	NA	Intergenic	Intergenic	-3026	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
230543	chr9	128397051	128397700	+	0	NA	intron (NR_031672, intron 2 of 2).4	L2c|LINE|L2	-4661	NR_029837	407003		NR_029837	ENSG00000284185	MIR219A2	MIR219-2|MIRN219-2|hsa-mir-219a-2|mir-219a-2	microRNA 219a-2	ncRNA
206162	chr7	28008021	28008280	+	0	NA	intron (NM_175061, intron 1 of 4)	MIRc|SINE|MIR	-172307	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
129586	chr2	70072071	70072950	+	0	NA	intron (NR_033872, intron 4 of 10)	AluSz|SINE|Alu	14505	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
102823	chr17	76459521	76460080	+	0	NA	intron (NM_001166579, intron 2 of 6)	MIR|SINE|MIR	6449	NM_001166579	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
165352	chr3	88262651	88262950	+	0	NA	Intergenic	AluJb|SINE|Alu	-75656	NM_001368167	111064647		NM_001368165	ENSG00000283434	CSNKA2IP	-	casein kinase 2 subunit alpha' interacting protein	protein-coding
129807	chr2	71465521	71465780	+	0	NA	intron (NM_003494, intron 1 of 54)	L2a|LINE|L2	-1049	NM_001130984	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
70725	chr14	103349101	103349600	+	0	NA	Intergenic	AluSq2|SINE|Alu	11501	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
169369	chr3	160434121	160434380	+	0	NA	3' UTR (NM_001288753, exon 24 of 24)	3' UTR (NM_001288753, exon 24 of 24)	15536	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
57818	chr12	123152901	123153330	+	0	NA	Intergenic	Intergenic	-2025	NM_001384661	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
84272	chr16	30062171	30062530	+	0	NA	intron (NM_001365304, intron 4 of 13)	AluSz|SINE|Alu	-1929	NM_184043	226		NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase, fructose-bisphosphate A	protein-coding
31522	chr10	96830301	96830930	+	0	NA	TTS (NR_135921)	TTS (NR_135921)	-1683	NM_001170765	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
104245	chr17	80729921	80730180	+	0	NA	intron (NM_020761, intron 4 of 33)	intron (NM_020761, intron 4 of 33)	75582	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
179767	chr5	273671	273930	+	0	NA	intron (NM_001267557, intron 2 of 3)	intron (NM_001267557, intron 2 of 3)	2154	NM_001267559	10016		NM_013232	ENSG00000249915	PDCD6	ALG-2|ALG2|PEF1B	programmed cell death 6	protein-coding
92419	chr17	8387071	8387230	+	0	NA	Intergenic	L2b|LINE|L2	-3957	NM_000987	6154		NM_000987	ENSG00000161970	RPL26	DBA11|L26|uL24	ribosomal protein L26	protein-coding
176614	chr4	99118171	99118330	+	0	NA	intron (NR_037884, intron 1 of 9)	intron (NR_037884, intron 1 of 9)	26047	NM_000670	127		NM_000670	ENSG00000198099	ADH4	ADH-2|HEL-S-4	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
32126	chr10	101231851	101233130	+	0	NA	intron (NR_029380, intron 2 of 2)	intron (NR_029380, intron 2 of 2)	2896	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
225152	chr9	33778651	33779100	+	0	NA	intron (NM_001197098, intron 1 of 4)	L1PA16|LINE|L1	-16686	NM_002771	5646		NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	serine protease 3	protein-coding
57111	chr12	121094651	121094750	+	0	NA	Intergenic	L1MA9|LINE|L1	-38176	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
77781	chr15	86385971	86386190	+	0	NA	intron (NM_152336, intron 17 of 24)	(CTC)n|Simple_repeat|Simple_repeat	-69112	NR_046012	727915		NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
39609	chr11	61363721	61364180	+	0	NA	intron (NM_016464, intron 1 of 4)	MIR|SINE|MIR	1576	NM_016464	51524		NM_016464	ENSG00000149483	TMEM138	HSPC196	transmembrane protein 138	protein-coding
236802	chrX	79155701	79156280	+	0	NA	intron (NM_032553, intron 1 of 2)	intron (NM_032553, intron 1 of 2)	11302	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
230270	chr9	127918371	127919130	+	0	NA	Intergenic	Intergenic	-1709	NM_175039	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
166230	chr3	112120021	112120680	+	0	NA	TTS (NM_152785)	TTS (NM_152785)	7549	NR_030292	693152		NR_030292	ENSG00000207940	MIR567	MIRN567|hsa-mir-567	microRNA 567	ncRNA
63970	chr14	22163001	22163600	+	0	NA	Intergenic	Intergenic	269453	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
62264	chr13	98569121	98570050	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	7522	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
40758	chr11	64844131	64846230	+	0	NA	promoter-TSS (NM_017525)	promoter-TSS (NM_017525)	-527	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
176713	chr4	101224671	101224930	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	16072	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
60649	chr13	42486901	42487100	+	0	NA	Intergenic	Intergenic	62108	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
179510	chr4	184735551	184735650	+	0	NA	Intergenic	AluY|SINE|Alu	-1504	NR_104593	79682		NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
41056	chr11	65483501	65483700	+	0	NA	Intergenic	MER34A|LTR|ERV1	-14138	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
212346	chr7	127484851	127485150	+	0	NA	intron (NR_110024, intron 3 of 3)	intron (NR_110024, intron 3 of 3)	8117	NR_110024	100506682		NR_110024	ENSG00000226770	LINC03012	-	long intergenic non-protein coding RNA 3012	ncRNA
87406	chr16	70575551	70575850	+	0	NA	3' UTR (NM_012426, exon 26 of 26)	3' UTR (NM_012426, exon 26 of 26)	-4195	NM_152456	146433		NM_152456	ENSG00000157368	IL34	C16orf77|IL-34	interleukin 34	protein-coding
163373	chr3	50482001	50482200	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	21534	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
86203	chr16	57997921	57999000	+	0	NA	5' UTR (NM_001384367, exon 3 of 3)	5' UTR (NM_001384367, exon 3 of 3)	-1143	NM_001330568	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
58343	chr12	131559771	131560400	+	0	NA	Intergenic	Intergenic	88036	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
77823	chr15	88631151	88631250	+	0	NA	3' UTR (NM_022767, exon 4 of 4)	3' UTR (NM_022767, exon 4 of 4)	-4432	NR_130134	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
103697	chr17	78815071	78815330	+	0	NA	intron (NR_169585, intron 10 of 19)	AluSc|SINE|Alu	25614	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
42144	chr11	67651851	67651950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1170	NM_080658	91703		NM_080658	ENSG00000132744	ACY3	ACY-3|HCBP1	aminoacylase 3	protein-coding
233699	chrX	1215071	1215230	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2427	NM_001012288	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
77992	chr15	89486371	89486930	+	0	NA	intron (NM_001321041, intron 2 of 10)	intron (NM_001321041, intron 2 of 10)	9933	NM_001321041	51458		NM_016321	ENSG00000140519	RHCG	C15orf6|PDRC2|RHGK|SLC42A3	Rh family C glycoprotein	protein-coding
11692	chr1	91850001	91850200	+	0	NA	intron (NR_036634, intron 2 of 17)	AluY|SINE|Alu	36051	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
76589	chr15	75352651	75353250	+	0	NA	TTS (NM_001352519)	TTS (NM_001352519)	735	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
116828	chr19	18568401	18568830	+	0	NA	exon (NM_024069, exon 5 of 5)	exon (NM_024069, exon 5 of 5)	-3115	NM_001321017	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
195711	chr6	38871951	38872280	+	0	NA	intron (NM_001371, intron 48 of 91)	intron (NM_001371, intron 48 of 91)	80992	NR_038401	100131047		NR_038401		DNAH8-AS1	-	DNAH8 antisense RNA 1	ncRNA
36816	chr11	9673171	9673330	+	0	NA	intron (NM_001297714, intron 1 of 10)	MER21A|LTR|ERVL	9173	NM_015055	23075		NM_015055	ENSG00000133789	SWAP70	HSPC321|SWAP-70	switching B cell complex subunit SWAP70	protein-coding
166384	chr3	113489951	113490450	+	0	NA	intron (NM_144718, intron 6 of 17)	L2c|LINE|L2	24644	NM_001331079	152185		NM_144718	ENSG00000163611	SPICE1	CCDC52|SPICE	spindle and centriole associated protein 1	protein-coding
214526	chr7	150508321	150508930	+	0	NA	Intergenic	Intergenic	-6247	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
32058	chr10	101065971	101067000	+	0	NA	non-coding (NR_135068, exon 1 of 2)	non-coding (NR_135068, exon 1 of 2)	102	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
221342	chr8	123160271	123160800	+	0	NA	intron (NM_001363151, intron 19 of 19)	intron (NM_001363151, intron 19 of 19)	-18512	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
136232	chr2	174599101	174599480	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-1059	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
218145	chr8	41792121	41792730	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	5197	NM_000037	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
34874	chr11	360371	360530	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-9049	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
190522	chr5	180591351	180591650	+	0	NA	promoter-TSS (NM_052863)	promoter-TSS (NM_052863)	-1	NM_052863	92304		NM_052863	ENSG00000161055	SCGB3A1	HIN-1|HIN1|LU105|PnSP-2|UGRP2	secretoglobin family 3A member 1	protein-coding
101677	chr17	68352401	68352600	+	0	NA	intron (NM_001352901, intron 5 of 11)	AluSx1|SINE|Alu	60365	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
231679	chr9	131693771	131693930	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	15992	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
71155	chr14	105016671	105017530	+	0	NA	intron (NM_017955, intron 1 of 1)	intron (NM_017955, intron 1 of 1)	3983	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
40278	chr11	63841601	63842080	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	2730	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
167405	chr3	128995721	128995980	+	0	NA	intron (NM_001348521, intron 1 of 15)	MLT1G1|LTR|ERVL-MaLR	-1774	NM_020741	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
33765	chr10	122551101	122552100	+	0	NA	Intergenic	Intergenic	-9154	NM_001320644	1755		NM_004406	ENSG00000187908	DMBT1	GP340|SAG|SALSA|muclin	deleted in malignant brain tumors 1	protein-coding
48980	chr12	13066601	13066800	+	0	NA	exon (NM_020853, exon 6 of 13)	exon (NM_020853, exon 6 of 13)	22319	NM_020853	57613		NM_020853	ENSG00000084444	FAM234B	KIAA1467	family with sequence similarity 234 member B	protein-coding
114574	chr19	12918001	12918200	+	0	NA	intron (NM_001105578, intron 2 of 5)	AluJb|SINE|Alu	1193	NM_001105578	256126		NM_001105578	ENSG00000161860	SYCE2	CESC1	synaptonemal complex central element protein 2	protein-coding
161393	chr3	41210121	41210380	+	0	NA	intron (NM_001098210, intron 1 of 15)	AluY|SINE|Alu	10745	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
199636	chr6	121436621	121437400	+	0	NA	intron (NM_000165, intron 1 of 1)	intron (NM_000165, intron 1 of 1)	1364	NM_000165	2697		NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
195442	chr6	36967871	36968030	+	0	NA	TTS (NR_130739)	TTS (NR_130739)	13212	NM_153370	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
228927	chr9	113216671	113217480	+	0	NA	intron (NM_015258, intron 1 of 27)	AluSq2|SINE|Alu	4202	NM_015258	23307		NM_015258	ENSG00000119321	FKBP15	FKBP133|KIAA0674|PPP1R76	FKBP prolyl isomerase family member 15	protein-coding
39470	chr11	60987871	60988380	+	0	NA	intron (NM_006725, intron 1 of 12)	MIRb|SINE|MIR	16445	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
229237	chr9	114938921	114939700	+	0	NA	Intergenic	Intergenic	-8715	NM_001252290	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
41783	chr11	66849671	66849830	+	0	NA	exon (NM_000920, exon 20 of 22)	exon (NM_000920, exon 20 of 22)	6309	NM_001032279	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
178794	chr4	153491771	153492150	+	0	NA	intron (NM_015196, intron 3 of 34)	AluJb|SINE|Alu	25600	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
153104	chr22	23538971	23539920	+	0	NA	intron (NR_109832, intron 2 of 3)	HERVK-int|LTR|ERVK	1343	NR_109832	101978785		NR_109832		PCAT14	-	prostate cancer associated transcript 14	ncRNA
180002	chr5	963271	964230	+	0	NA	Intergenic	Intergenic	33590	NR_104614	100506688		NM_001242737	ENSG00000215246	LINC02982	-	long intergenic non-protein coding RNA 2982	ncRNA
206934	chr7	38233901	38234350	+	0	NA	Intergenic	L1ME4b|LINE|L1	39522	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
98934	chr17	48626501	48627400	+	0	NA	promoter-TSS (NM_024017)	promoter-TSS (NM_024017)	-592	NM_024017	3219		NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
33790	chr10	123139201	123139600	+	0	NA	TTS (NM_001105574)	TTS (NM_001105574)	3430	NM_001105574	340784		NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
8206	chr1	39641771	39641930	+	0	NA	Intergenic	AluJo|SINE|Alu	-2207	NM_014571	26508		NM_014571	ENSG00000163909	HEYL	HESR3|HEY3|HRT3|bHLHb33	hes related family bHLH transcription factor with YRPW motif like	protein-coding
25550	chr10	7480221	7480480	+	0	NA	Intergenic	MIR|SINE|MIR	-68864	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
5242	chr1	25012221	25012680	+	0	NA	Intergenic	Intergenic	-11053	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
107121	chr18	35076151	35076930	+	0	NA	intron (NR_046177, intron 2 of 6)	intron (NR_046177, intron 2 of 6)	35127	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
28621	chr10	58336371	58336600	+	0	NA	intron (NM_003338, intron 1 of 6)	intron (NM_003338, intron 1 of 6)	1479	NM_003338	7321		NM_003338	ENSG00000072401	UBE2D1	E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A	ubiquitin conjugating enzyme E2 D1	protein-coding
238777	chrX	154362201	154363200	+	0	NA	exon (NM_001456, exon 16 of 47)	exon (NM_001456, exon 16 of 47)	11934	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
82689	chr16	20675071	20675230	+	0	NA	intron (NR_134918, intron 3 of 10)	HERV15-int|LTR|ERV1	16106	NR_134918	116285		NM_052956	ENSG00000166743	ACSM1	BUCS1|MACS1	acyl-CoA synthetase medium chain family member 1	protein-coding
57450	chr12	121912351	121913130	+	0	NA	intron (NR_048555, intron 3 of 4)	AluSq|SINE|Alu	-5852	NM_144668	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
108779	chr18	77208751	77209450	+	0	NA	Intergenic	L1MDa|LINE|L1	-40748	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
99523	chr17	50343901	50344350	+	0	NA	Intergenic	AluY|SINE|Alu	-2001	NM_022167	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
84752	chr16	30966371	30966530	+	0	NA	intron (NM_014712, intron 8 of 18)	intron (NM_014712, intron 8 of 18)	8696	NM_014712	9739		NM_014712	ENSG00000099381	SETD1A	EPEDD|EPEO2|KMT2F|NEDSID|Set1|Set1A	SET domain containing 1A, histone lysine methyltransferase	protein-coding
129034	chr2	64988801	64990550	+	0	NA	exon (NM_003038, exon 1 of 8)	exon (NM_003038, exon 1 of 8)	276	NM_003038	6509		NM_003038	ENSG00000115902	SLC1A4	ASCT1|SATT|SPATCCM	solute carrier family 1 member 4	protein-coding
119354	chr19	39991151	39991600	+	0	NA	Intergenic	Intergenic	-5685	NM_178544	339327		NM_178544	ENSG00000187187	ZNF546	ZNF49	zinc finger protein 546	protein-coding
151985	chr22	19168101	19168530	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-3391	NR_103767	100652736		NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
506	chr1	1198671	1198830	+	0	NA	TTS (NM_001130045)	TTS (NM_001130045)	7842	NM_148902	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
129301	chr2	68519501	68520200	+	0	NA	intron (NM_173545, intron 5 of 9)	L1PB1|LINE|L1	52265	NM_173545	200558		NM_173545	ENSG00000169621	APLF	APFL|C2orf13|PALF|Xip1|ZCCHH1	aprataxin and PNKP like factor	protein-coding
177308	chr4	109649971	109650500	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	53210	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
88287	chr16	83956701	83957100	+	0	NA	intron (NM_182981, intron 1 of 5)	intron (NM_182981, intron 1 of 5)	3660	NM_182981	29948		NM_013370	ENSG00000140961	OSGIN1	BDGI|OKL38	oxidative stress induced growth inhibitor 1	protein-coding
172480	chr4	2141701	2142500	+	0	NA	intron (NM_181808, intron 16 of 25)	MamGypLTR2c|LTR|Gypsy	82773	NM_178557	339983		NM_178557	ENSG00000185818	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8 like	protein-coding
41128	chr11	65569301	65570930	+	0	NA	promoter-TSS (NM_006396)	promoter-TSS (NM_006396)	298	NR_038923	254100		NR_038923		ZNRD2-DT	SSSCA1-AS1|ZNRD2-AS1	ZNRD2 divergent transcript	ncRNA
187051	chr5	139968371	139969080	+	0	NA	intron (NM_013981, intron 1 of 9)	intron (NM_013981, intron 1 of 9)	74574	NM_004883	9542		NM_004883	ENSG00000158458	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
75704	chr15	68055101	68055900	+	0	NA	intron (NM_001320687, intron 1 of 14)	intron (NM_001320687, intron 1 of 14)	924	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
93644	chr17	19181071	19182580	+	0	NA	Intergenic	Intergenic	-6191	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
197899	chr6	89352201	89353300	+	0	NA	promoter-TSS (NM_016021)	promoter-TSS (NM_016021)	-28	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
212073	chr7	115014501	115015350	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	-64033	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
183765	chr5	81737451	81738150	+	0	NA	intron (NM_001256733, intron 1 of 15)	AluY|SINE|Alu	13453	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
178693	chr4	152537851	152538600	+	0	NA	non-coding (NR_033797, exon 1 of 1)	non-coding (NR_033797, exon 1 of 1)	1797	NR_039658	100616193		NR_039658	ENSG00000283792	MIR4453	-	microRNA 4453	ncRNA
163046	chr3	49872471	49873350	+	0	NA	Intergenic	Intergenic	-3004	NM_001320147	79012		NM_024046	ENSG00000164076	CAMKV	1G5|VACAMKL	CaM kinase like vesicle associated	protein-coding
45829	chr11	119367371	119368130	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	-3542	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
232021	chr9	133367951	133368800	+	0	NA	intron (NM_001280791, intron 1 of 5)	intron (NM_001280791, intron 1 of 5)	7685	NM_033161	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
64335	chr14	23969321	23970830	+	0	NA	promoter-TSS (NM_001193635)	promoter-TSS (NM_001193635)	60	NM_001193635	317749		NM_198083	ENSG00000187630	DHRS4L2	SDR25C3	dehydrogenase/reductase 4 like 2	protein-coding
210375	chr7	99622971	99624000	+	0	NA	intron (NM_001350986, intron 6 of 6)	intron (NM_001350986, intron 6 of 6)	6539	NM_001350984	221785		NM_145115	ENSG00000197037	ZSCAN25	ZNF498	zinc finger and SCAN domain containing 25	protein-coding
41821	chr11	67027551	67028330	+	0	NA	intron (NM_177963, intron 1 of 7)	intron (NM_177963, intron 1 of 7)	4806	NM_177963	91683		NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
1145	chr1	2179521	2179780	+	0	NA	intron (NM_001033581, intron 13 of 14)	intron (NM_001033581, intron 13 of 14)	4225	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
155453	chr22	38473471	38473630	+	0	NA	intron (NM_006855, intron 1 of 4)	intron (NM_006855, intron 1 of 4)	5454	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
181447	chr5	41843371	41843900	+	0	NA	promoter-TSS (NM_001364303)	promoter-TSS (NM_001364303)	22	NM_001364303	5019		NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA-transferase 1	protein-coding
118995	chr19	38887371	38888200	+	0	NA	intron (NR_034146, intron 6 of 13)	AluSg|SINE|Alu	6370	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
158915	chr3	10010501	10011980	+	0	NA	promoter-TSS (NM_018447)	promoter-TSS (NM_018447)	8	NM_018447	55831		NM_018447	ENSG00000125037	EMC3	POB|TMEM111	ER membrane protein complex subunit 3	protein-coding
210840	chr7	101000201	101000600	+	0	NA	exon (NM_001164462, exon 2 of 12)	exon (NM_001164462, exon 2 of 12)	17208	NR_120519	102724094		NR_120519	ENSG00000227053	MUC12-AS1	-	MUC12 antisense RNA 1	ncRNA
154055	chr22	30598251	30598350	+	0	NA	intron (NM_001282327, intron 2 of 16)	LTR12C|LTR|ERV1	-6390	NM_014303	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
153565	chr22	26656771	26658100	+	0	NA	promoter-TSS (NR_003491)	promoter-TSS (NR_003491)	-47	NR_033321	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
183839	chr5	86917201	86917680	+	0	NA	Intergenic	Intergenic	170622	NR_105017	100505878		NR_105017		LINC02059	-	long intergenic non-protein coding RNA 2059	ncRNA
91062	chr17	3011051	3011550	+	0	NA	intron (NM_001100398, intron 16 of 23)	intron (NM_001100398, intron 16 of 23)	-45405	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
223720	chr8	144460951	144461630	+	0	NA	intron (NM_138496, intron 2 of 4)	intron (NM_138496, intron 2 of 4)	1249	NR_162109	113218512		NR_162109		MIR10400	-	microRNA 10400	ncRNA
142444	chr20	3968321	3968780	+	0	NA	intron (NM_001134337, intron 1 of 5)	AluJr4|SINE|Alu	47008	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
121943	chr19	48464101	48464450	+	0	NA	exon (NM_013348, exon 3 of 3)	exon (NM_013348, exon 3 of 3)	-4933	NM_017457	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
229010	chr9	113676451	113676750	+	0	NA	Intergenic	Intergenic	82471	NM_001276262	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
137625	chr2	197327371	197327530	+	0	NA	Intergenic	Intergenic	-16670	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
129978	chr2	73998271	73999300	+	0	NA	intron (NM_001287491, intron 2 of 11)	intron (NM_001287491, intron 2 of 11)	-3907	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
177971	chr4	139041851	139042350	+	0	NA	intron (NM_012118, intron 1 of 2)	AluSz|SINE|Alu	26319	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
12987	chr1	110909001	110909200	+	0	NA	Intergenic	L1PA15|LINE|L1	35952	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
697	chr1	1401751	1402530	+	0	NA	TTS (NR_015434)	TTS (NR_015434)	2610	NR_015434	148413		NR_015434	ENSG00000224870	MRPL20-AS1	-	MRPL20 antisense RNA 1	ncRNA
219702	chr8	80904751	80904950	+	0	NA	Intergenic	Intergenic	-30069	NM_001033723	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
18638	chr1	166874251	166874550	+	0	NA	intron (NM_053053, intron 1 of 7)	intron (NM_053053, intron 1 of 7)	1864	NM_053053	117143		NM_053053	ENSG00000152382	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
19805	chr1	182605801	182606000	+	0	NA	Intergenic	Intergenic	-1511	NM_002928	6004		NM_002928	ENSG00000143333	RGS16	A28-RGS14|A28-RGS14P|RGS-R	regulator of G protein signaling 16	protein-coding
19491	chr1	175072321	175072600	+	0	NA	intron (NM_022093, intron 1 of 18)	intron (NM_022093, intron 1 of 18)	4627	NM_022093	63923		NM_022093	ENSG00000120332	TNN	TN-W|TNW	tenascin N	protein-coding
194818	chr6	34269521	34270000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-20652	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
209425	chr7	76360751	76360850	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1809	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
37249	chr11	14633451	14634150	+	0	NA	intron (NM_148976, intron 1 of 10)	L1PA2|LINE|L1	9834	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
212379	chr7	127905871	127906030	+	0	NA	intron (NM_014390, intron 14 of 23)	intron (NM_014390, intron 14 of 23)	-91559	NR_027330	27099		NM_014411	ENSG00000279078	SND1-IT1	C7orf54|NAG8|NSG-X	SND1 intronic transcript 1	ncRNA
102241	chr17	75251701	75252300	+	0	NA	intron (NM_001291641, intron 1 of 17)	AluJb|SINE|Alu	9606	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
128242	chr2	54513151	54513250	+	0	NA	intron (NM_003128, intron 1 of 35)	AluJb|SINE|Alu	-16022	NR_002229	56969		NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
61680	chr13	74017351	74017850	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	116329	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
13771	chr1	117069501	117069700	+	0	NA	intron (NM_003594, intron 3 of 22)	MIR|SINE|MIR	9274	NM_003594	8458		NM_003594	ENSG00000116830	TTF2	F2|HuF2|ZGRF6	transcription termination factor 2	protein-coding
4170	chr1	19395871	19396230	+	0	NA	intron (NM_001313932, intron 2 of 4)	intron (NM_001313932, intron 2 of 4)	83724	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
96508	chr17	40321101	40321600	+	0	NA	intron (NM_001145301, intron 1 of 8)	intron (NM_001145301, intron 1 of 8)	3105	NM_001145302	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
135350	chr2	160402521	160402780	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	5232	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
70652	chr14	102947971	102948130	+	0	NA	intron (NM_006035, intron 26 of 36)	intron (NM_006035, intron 26 of 36)	25387	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
20768	chr1	201009351	201009930	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	14074	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
21066	chr1	203296821	203297500	+	0	NA	Intergenic	L2|LINE|L2	8165	NR_034150	730227		NR_034150	ENSG00000233791	BTG2-DT	LINC01136	BTG2 divergent transcript	ncRNA
92843	chr17	16216871	16218050	+	0	NA	exon (NM_004278, exon 1 of 7)	exon (NM_004278, exon 1 of 7)	250	NM_004278	9487		NM_004278	ENSG00000108474	PIGL	CHIME	phosphatidylinositol glycan anchor biosynthesis class L	protein-coding
28570	chr10	50738301	50738700	+	0	NA	Intergenic	L2|LINE|L2	-1436	NM_001321957	653308		NM_001079516	ENSG00000204147	ASAH2B	ASAH2C|ASAH2L|bA449O16.3|bA98I6.3	N-acylsphingosine amidohydrolase 2B	protein-coding
153472	chr22	25432071	25432230	+	0	NA	Intergenic	Intergenic	-15937	NR_033734	1416		NR_033733	ENSG00000291087	CRYBB2P1	CRYB2B	crystallin beta B2 pseudogene 1	pseudo
66084	chr14	59201771	59202250	+	0	NA	intron (NM_001270520, intron 1 of 24)	intron (NM_001270520, intron 1 of 24)	13343	NM_001270520	23002		NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
161142	chr3	38805871	38806030	+	0	NA	Intergenic	Intergenic	-11940	NM_006514	6336		NM_006514	ENSG00000185313	SCN10A	FEPS2|Nav1.8|PN3|SNS	sodium voltage-gated channel alpha subunit 10	protein-coding
52760	chr12	56661471	56663250	+	0	NA	TTS (NM_001282604)	TTS (NM_001282604)	-16376	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
233970	chrX	2692901	2695180	+	0	NA	intron (NR_135623, intron 1 of 10)	intron (NR_135623, intron 1 of 10)	2745	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
86726	chr16	67568501	67569230	+	0	NA	intron (NM_006565, intron 1 of 11)	AluSg|SINE|Alu	-1908	NM_001363916	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
206078	chr7	27180851	27181150	+	0	NA	promoter-TSS (NR_037940)	promoter-TSS (NR_037940)	-739	NR_037940	100534589		NR_037940		HOXA10-HOXA9	-	HOXA10-HOXA9 readthrough	ncRNA
69596	chr14	97381501	97381700	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-77216	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
133018	chr2	111736021	111736630	+	0	NA	Intergenic	Intergenic	34809	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
122416	chr19	49449221	49449750	+	0	NA	exon (NM_017916, exon 3 of 9)	exon (NM_017916, exon 3 of 9)	2329	NM_017916	55011		NM_017916	ENSG00000104872	PIH1D1	DNAAF14|MOT48|NOP17|Pih1	PIH1 domain containing 1	protein-coding
170672	chr3	187735671	187735830	+	0	NA	promoter-TSS (NM_001134738)	promoter-TSS (NM_001134738)	751	NM_001130845	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
120590	chr19	45010771	45011000	+	0	NA	intron (NM_006509, intron 2 of 10)	AluSq2|SINE|Alu	9421	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
106910	chr18	26088601	26088880	+	0	NA	intron (NM_001308201, intron 1 of 10)	intron (NM_001308201, intron 1 of 10)	1873	NM_001007559	6760		NM_005637	ENSG00000141380	SS18	SMARCL1|SSXT|SYT	SS18 subunit of BAF chromatin remodeling complex	protein-coding
35402	chr11	1387351	1388000	+	0	NA	Intergenic	Intergenic	-2259	NR_046331	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
111741	chr19	4360251	4360350	+	0	NA	TTS (NM_001300862)	TTS (NM_001300862)	16738	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
13948	chr1	120348221	120348480	+	0	NA	Intergenic	AluJo|SINE|Alu	-66677	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
199114	chr6	111686171	111686580	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	72756	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
20539	chr1	198697171	198697330	+	0	NA	intron (NM_002838, intron 4 of 32)	intron (NM_002838, intron 4 of 32)	58210	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
67474	chr14	70904901	70905300	+	0	NA	Intergenic	Intergenic	-2359	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
221193	chr8	120738401	120738800	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-22653	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
52795	chr12	56720551	56721830	+	0	NA	exon (NM_001113203, exon 3 of 11)	exon (NM_001113203, exon 3 of 11)	4109	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
139728	chr2	229780721	229781580	+	0	NA	intron (NM_001348327, intron 34 of 41)	intron (NM_001348327, intron 34 of 41)	-66595	NM_139072	92737		NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch like EGF repeat containing	protein-coding
161099	chr3	38164691	38166580	+	0	NA	promoter-TSS (NM_005109)	promoter-TSS (NM_005109)	98	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
185033	chr5	115621571	115621730	+	0	NA	intron (NM_181836, intron 1 of 2)	Tigger16a|DNA|TcMar-Tigger	4386	NM_181836	51014		NM_181836	ENSG00000134970	TMED7	CGI-109|Tag|p24g3|p24gamma3|p27	transmembrane p24 trafficking protein 7	protein-coding
193689	chr6	31106351	31106650	+	0	NA	Intergenic	AluSc5|SINE|Alu	6075	NM_014070	29113		NM_014070	ENSG00000204542	C6orf15	STG	chromosome 6 open reading frame 15	protein-coding
62895	chr13	110812451	110812850	+	0	NA	non-coding (NR_135280, exon 1 of 1)	non-coding (NR_135280, exon 1 of 1)	434	NR_135280	283486		NR_135280	ENSG00000259831	LINC00567	-	long intergenic non-protein coding RNA 567	ncRNA
44875	chr11	114247101	114247300	+	0	NA	exon (NM_001018011, exon 6 of 7)	exon (NM_001018011, exon 6 of 7)	-10606	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
62401	chr13	99283601	99284030	+	0	NA	intron (NR_026644, intron 4 of 8)	AluSg|SINE|Alu	23584	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
184435	chr5	99028301	99028500	+	0	NA	Intergenic	AluSz6|SINE|Alu	99266	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
155263	chr22	37999421	38000350	+	0	NA	intron (NM_001301130, intron 5 of 5)	(TTGTTA)n|Simple_repeat|Simple_repeat	11091	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
169574	chr3	170368801	170369200	+	0	NA	intron (NM_001145098, intron 3 of 7)	intron (NM_001145098, intron 3 of 7)	9377	NM_001248008	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
43764	chr11	86218021	86219030	+	0	NA	Intergenic	Intergenic	-25859	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
47566	chr12	4323551	4323650	+	0	NA	intron (NM_020375, intron 1 of 5)	MIR|SINE|MIR	2387	NM_020375	57103		NM_020375	ENSG00000078237	TIGAR	C12orf5|FR2BP	TP53 induced glycolysis regulatory phosphatase	protein-coding
77867	chr15	88902901	88903480	+	0	NA	intron (NM_001114614, intron 5 of 6)	intron (NM_001114614, intron 5 of 6)	-7646	NM_178232	145864		NM_178232	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
39199	chr11	57482151	57482250	+	0	NA	Intergenic	Intergenic	21672	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
157431	chr22	45172551	45173480	+	0	NA	intron (NM_153645, intron 4 of 8)	intron (NM_153645, intron 4 of 8)	8344	NM_153645	10762		NM_007172	ENSG00000093000	NUP50	NPAP60|NPAP60L	nucleoporin 50	protein-coding
193560	chr6	30626451	30627750	+	0	NA	TTS (NM_014046).5	TTS (NM_014046).5	226	NM_001031722	79969		NM_024909	ENSG00000137343	ATAT1	C6orf134|MEC17|Nbla00487|TAT|alpha-TAT|alpha-TAT1	alpha tubulin acetyltransferase 1	protein-coding
147430	chr20	58901151	58901250	+	0	NA	TTS (NM_001309842)	TTS (NM_001309842)	9037	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
89472	chr16	89095451	89095830	+	0	NA	intron (NM_001127214, intron 1 of 9)	intron (NM_001127214, intron 1 of 9)	1788	NM_001284316	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
62860	chr13	110525671	110526030	+	0	NA	intron (NM_017817, intron 1 of 1)	intron (NM_017817, intron 1 of 1)	-17671	NR_046583	100874203		NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
3817	chr1	16771601	16771800	+	0	NA	Intergenic	L2a|LINE|L2	-7220	NM_001271733	11223		NM_001271733	ENSG00000186715	MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P|MST1P7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1 like (pseudogene)	pseudo
64585	chr14	24806271	24806430	+	0	NA	Intergenic	MIRb|SINE|MIR	-172160	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
83792	chr16	28763151	28763650	+	0	NA	intron (NM_001287251, intron 3 of 7)	intron (NM_001287251, intron 3 of 7)	10965	NM_001287250	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
163780	chr3	52388171	52388330	+	0	NA	exon (NM_015512, exon 57 of 78)	exon (NM_015512, exon 57 of 78)	21758	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
11102	chr1	85707751	85708850	+	0	NA	5' UTR (NM_017953, exon 1 of 10)	5' UTR (NM_017953, exon 1 of 10)	133	NM_017953	54680		NM_017953	ENSG00000117174	ZNHIT6	BCD1|C1orf181|NY-BR-75	zinc finger HIT-type containing 6	protein-coding
182368	chr5	60668551	60668900	+	0	NA	intron (NM_001145208, intron 2 of 9)	L1M5|LINE|L1	31441	NM_001145208	55789		NM_018369	ENSG00000035499	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
1695	chr1	4660971	4661130	+	0	NA	intron (NM_018836, intron 1 of 5)	intron (NM_018836, intron 1 of 5)	6441	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
131809	chr2	98601521	98601830	+	0	NA	intron (NM_001008215, intron 2 of 2)	MER1B|DNA|hAT-Charlie	6837	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
166670	chr3	120092201	120092680	+	0	NA	intron (NM_001146156, intron 1 of 10)	intron (NM_001146156, intron 1 of 10)	2007	NM_001354596	2932		NM_002093	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding
12506	chr1	108082921	108083430	+	0	NA	Intergenic	L2b|LINE|L2	109660	NM_213651	29957		NM_013386	ENSG00000085491	SLC25A24	APC1|SCAMC-1|SCAMC1	solute carrier family 25 member 24	protein-coding
34750	chr11	177271	178630	+	0	NA	Intergenic	LTR36|LTR|ERV1	-15128	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
201807	chr6	150008051	150008150	+	0	NA	Intergenic	Intergenic	-2956	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
72024	chr15	28106001	28107000	+	0	NA	Intergenic	CpG	-7185	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
173932	chr4	25439951	25440300	+	0	NA	Intergenic	Intergenic	62862	NM_013367	29945		NM_013367	ENSG00000053900	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding
218306	chr8	42540451	42542300	+	0	NA	promoter-TSS (NM_001135675)	promoter-TSS (NM_001135675)	137	NM_001257181	6575		NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC2|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
189507	chr5	173283471	173284080	+	0	NA	Intergenic	CpG	-19955	NR_162132	113219469		NR_162132		MIR12118	-	microRNA 12118	ncRNA
130136	chr2	74835951	74836100	+	0	NA	intron (NM_001371525, intron 1 of 17)	intron (NM_001371525, intron 1 of 17)	855	NM_001371525	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
110361	chr19	1899921	1900330	+	0	NA	Intergenic	AluY|SINE|Alu	-5274	NM_138422	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
230630	chr9	128643551	128643650	+	0	NA	intron (NM_052844, intron 1 of 8)	AluJb|SINE|Alu	13250	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
76137	chr15	72552221	72552680	+	0	NA	intron (NM_005744, intron 3 of 13)	AluSz|SINE|Alu	-34767	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
82777	chr16	21444571	21445230	+	0	NA	Intergenic	Intergenic	-10445	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
107381	chr18	46068301	46068500	+	0	NA	intron (NM_024430, intron 1 of 14)	AluY|SINE|Alu	3860	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
164354	chr3	58042021	58042500	+	0	NA	intron (NM_001164319, intron 1 of 44)	intron (NM_001164319, intron 1 of 44)	33838	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
148068	chr20	63281971	63282750	+	0	NA	intron (NM_001281483, intron 7 of 12)	intron (NM_001281483, intron 7 of 12)	-1952	NR_104023	55738		NM_018209	ENSG00000101199	ARFGAP1	ARF1GAP|HRIHFB2281	ADP ribosylation factor GTPase activating protein 1	protein-coding
598	chr1	1296751	1297150	+	0	NA	promoter-TSS (NR_106784)	promoter-TSS (NR_106784)	-780	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
199027	chr6	111257671	111257830	+	0	NA	Intergenic	AluSg|SINE|Alu	-1589	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
203966	chr7	1564771	1564930	+	0	NA	Intergenic	Intergenic	5182	NM_032302	84262		NM_032302	ENSG00000157778	PSMG3	C7orf48|PAC3	proteasome assembly chaperone 3	protein-coding
105691	chr18	2664571	2665600	+	0	NA	intron (NM_015295, intron 1 of 47)	intron (NM_015295, intron 1 of 47)	9359	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
196779	chr6	45595251	45595550	+	0	NA	Intergenic	Intergenic	173125	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
83981	chr16	29323951	29324250	+	0	NA	intron (NR_002939, intron 3 of 8)	intron (NR_002939, intron 3 of 8)	21813	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
193717	chr6	31193401	31193780	+	0	NA	Intergenic	Intergenic	-4170	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
6331	chr1	27671151	27671450	+	0	NA	intron (NM_022872, intron 1 of 4)	MIRb|SINE|MIR	892	NM_002038	2537		NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon alpha inducible protein 6	protein-coding
117537	chr19	20664501	20664900	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-3104	NM_145297	199777		NM_145297	ENSG00000188171	ZNF626	-	zinc finger protein 626	protein-coding
50324	chr12	46811271	46811430	+	0	NA	intron (NM_018018, intron 1 of 16)	L2b|LINE|L2	14647	NM_018018	55089		NM_018018	ENSG00000139209	SLC38A4	ATA3|NAT3|PAAT|SNAT4	solute carrier family 38 member 4	protein-coding
208831	chr7	73689401	73690030	+	0	NA	intron (NR_045512, intron 5 of 10)	intron (NR_045512, intron 5 of 10)	6118	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
222832	chr8	142510051	142511100	+	0	NA	intron (NM_001702, intron 17 of 30)	CpG	60926	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
130614	chr2	85996071	85996430	+	0	NA	Intergenic	Intergenic	106970	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
182396	chr5	61306621	61306880	+	0	NA	Intergenic	L2b|LINE|L2	-25508	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
84428	chr16	30381401	30381700	+	0	NA	intron (NM_052838, intron 5 of 11)	intron (NM_052838, intron 5 of 11)	1011	NM_001365977	1731		NM_052838	ENSG00000180096	SEPTIN1	DIFF6|LARP|PNUTL3|SEP1|SEPT1|Septin-1	septin 1	protein-coding
208516	chr7	70177451	70177940	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	579220	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
231167	chr9	129888301	129889980	+	0	NA	3' UTR (NM_015033, exon 17 of 17)	3' UTR (NM_015033, exon 17 of 17)	19535	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
101169	chr17	65122951	65123700	+	0	NA	Intergenic	CpG	-14045	NM_001081955	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
54068	chr12	76033721	76034280	+	0	NA	Intergenic	AluJo|SINE|Alu	-2224	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
86745	chr16	67646801	67647480	+	0	NA	exon (NM_001013838, exon 9 of 38)	exon (NM_001013838, exon 9 of 38)	1996	NM_001013838	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
133850	chr2	128280051	128280950	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	38368	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
126376	chr2	27489071	27490200	+	0	NA	exon (NM_015662, exon 1 of 48)	exon (NM_015662, exon 1 of 48)	108	NM_015662	26160		NM_015662	ENSG00000138002	IFT172	BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim	intraflagellar transport 172	protein-coding
227446	chr9	90287671	90287830	+	0	NA	Intergenic	Intergenic	145739	NR_109795	101927873		NR_109795	ENSG00000231107	LINC01508	-	long intergenic non-protein coding RNA 1508	ncRNA
10605	chr1	67561621	67561930	+	0	NA	Intergenic	Intergenic	-123426	NM_001924	1647		NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
168987	chr3	152408601	152409080	+	0	NA	intron (NM_001314057, intron 3 of 11)	MER20|DNA|hAT-Charlie	-67850	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
217663	chr8	30090521	30091600	+	0	NA	Intergenic	Intergenic	-4348	NM_001128208	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
102706	chr17	76152851	76152950	+	0	NA	intron (NM_052916, intron 17 of 18)	intron (NM_052916, intron 17 of 18)	-11655	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
20389	chr1	198165521	198166330	+	0	NA	intron (NM_133494, intron 1 of 9)	Tigger1|DNA|TcMar-Tigger	8927	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
39027	chr11	47758921	47759350	+	0	NA	intron (NM_015308, intron 2 of 16)	AluSz|SINE|Alu	8206	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
236090	chrX	56778021	56778880	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-40866	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
189886	chr5	177328901	177329400	+	0	NA	Intergenic	AluSz|SINE|Alu	-17252	NM_001142935	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
203998	chr7	1824571	1825330	+	0	NA	intron (NM_001304524, intron 16 of 16)	(TCACAC)n|Simple_repeat|Simple_repeat	19303	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
200683	chr6	137231051	137232280	+	0	NA	Intergenic	Intergenic	-12280	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
220762	chr8	102401321	102401580	+	0	NA	intron (NM_001282873, intron 1 of 58)	intron (NM_001282873, intron 1 of 58)	-10889	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
199249	chr6	111840071	111840600	+	0	NA	intron (NM_002037, intron 2 of 13)	MLT1D|LTR|ERVL-MaLR	32736	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
148096	chr20	63313401	63313800	+	0	NA	intron (NM_020882, intron 17 of 35)	(GTGGT)n|Simple_repeat|Simple_repeat	20414	NM_020882	57642		NM_020882	ENSG00000101203	COL20A1	-	collagen type XX alpha 1 chain	protein-coding
235945	chrX	53280051	53280430	+	0	NA	intron (NM_015075, intron 1 of 13)	intron (NM_015075, intron 1 of 13)	1344	NM_015075	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
161917	chr3	45994591	45996450	+	0	NA	intron (NM_024513, intron 1 of 17)	intron (NM_024513, intron 1 of 17)	304	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
214101	chr7	143817871	143818130	+	0	NA	intron (NR_015421, intron 2 of 2)	intron (NR_015421, intron 2 of 2)	3014	NM_001130026	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
224154	chr9	4936321	4936880	+	0	NA	Intergenic	(AACAAC)n|Simple_repeat|Simple_repeat	-48486	NM_001322195	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
159707	chr3	15637571	15638000	+	0	NA	intron (NM_001281726, intron 2 of 2)	L3|LINE|CR1	35816	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
201586	chr6	149338601	149339280	+	0	NA	intron (NM_015093, intron 2 of 8)	intron (NM_015093, intron 2 of 8)	20640	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
69413	chr14	94062001	94062400	+	0	NA	exon (NM_020414, exon 3 of 9).2	exon (NM_020414, exon 3 of 9).2	19002	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
216419	chr8	19313501	19314180	+	0	NA	promoter-TSS (NM_001363111)	promoter-TSS (NM_001363111)	-136	NM_001174159	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
18612	chr1	165827541	165829350	+	0	NA	intron (NM_012474, intron 1 of 6)	CpG	831	NM_012474	7371		NM_012474	ENSG00000143179	UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
207211	chr7	43648531	43649200	+	0	NA	intron (NR_135583, intron 1 of 7)	intron (NR_135583, intron 1 of 7)	65757	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
22960	chr1	226064101	226064600	+	0	NA	non-coding (NR_002315, exon 2 of 4)	non-coding (NR_002315, exon 2 of 4)	1623	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
135195	chr2	158477101	158477500	+	0	NA	5' UTR (NM_001377221, exon 2 of 23)	5' UTR (NM_001377221, exon 2 of 23)	19407	NM_001377218	8502		NM_003628	ENSG00000144283	PKP4	p0071	plakophilin 4	protein-coding
23274	chr1	227946321	227947050	+	0	NA	intron (NM_003395, intron 1 of 3)	intron (NM_003395, intron 1 of 3)	1247	NM_003395	7483		NM_003395	ENSG00000143816	WNT9A	WNT14	Wnt family member 9A	protein-coding
3515	chr1	16055471	16056700	+	0	NA	intron (NM_000085, intron 18 of 19)	MIRc|SINE|MIR	7323	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
213477	chr7	139039721	139039980	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-3808	NM_080660	92092		NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding
78800	chr15	99476671	99477230	+	0	NA	Intergenic	Intergenic	-88467	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
103148	chr17	77411221	77411980	+	0	NA	intron (NM_001293696, intron 1 of 9)	AluSq4|SINE|Alu	6523	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
81869	chr16	11666171	11666630	+	0	NA	Intergenic	Intergenic	-2055	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
85861	chr16	57030771	57031300	+	0	NA	intron (NM_001384955, intron 10 of 47)	AluJb|SINE|Alu	41478	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
50968	chr12	49552051	49552630	+	0	NA	intron (NM_001314030, intron 10 of 14)	intron (NM_001314030, intron 10 of 14)	13310	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
36379	chr11	3981401	3981800	+	0	NA	intron (NM_001382568, intron 2 of 11)	intron (NM_001382568, intron 2 of 11)	-113085	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
130713	chr2	86731271	86731430	+	0	NA	intron (NM_022780, intron 1 of 8)	intron (NM_022780, intron 1 of 8)	-10228	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
198910	chr6	109978521	109978830	+	0	NA	intron (NM_005284, intron 1 of 1)	CpG	364	NM_005284	2830		NM_005284	ENSG00000146360	GPR6	-	G protein-coupled receptor 6	protein-coding
194050	chr6	31851001	31851450	+	0	NA	Intergenic	Intergenic	11596	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
185339	chr5	126851421	126851800	+	0	NA	Intergenic	Intergenic	74474	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
51573	chr12	52611771	52611930	+	0	NA	intron (NR_126005, intron 1 of 2)	L2c|LINE|L2	1999	NR_126005	100127967		NR_126005	ENSG00000257495	KRT73-AS1	-	KRT73 antisense RNA 1	ncRNA
111206	chr19	3472901	3473700	+	0	NA	TTS (NM_001136503)	TTS (NM_001136503)	7225	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
229858	chr9	126395321	126395880	+	0	NA	exon (NM_001011703, exon 6 of 6)	exon (NM_001011703, exon 6 of 6)	14904	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
22995	chr1	226109421	226111050	+	0	NA	Intergenic	CpG	26660	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
78461	chr15	92883401	92884300	+	0	NA	intron (NR_037601, intron 2 of 5)	intron (NR_037601, intron 2 of 5)	554	NR_037602	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
74230	chr15	56725501	56725980	+	0	NA	intron (NM_001002844, intron 1 of 5)	intron (NM_001002844, intron 1 of 5)	8346	NM_001288589	54816		NM_017661	ENSG00000137871	ZNF280D	SUHW4|ZNF634	zinc finger protein 280D	protein-coding
223005	chr8	143275921	143277350	+	0	NA	exon (NM_138465, exon 4 of 4)	exon (NM_138465, exon 4 of 4)	5065	NR_120683	100507316		NR_120682	ENSG00000253716	MINCR	LINC01604	MYC-induced long non-coding RNA	ncRNA
191980	chr6	16157551	16158200	+	0	NA	Intergenic	Intergenic	16319	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
85400	chr16	50305051	50305500	+	0	NA	intron (NM_001114, intron 12 of 25)	MIR1_Amn|SINE|MIR	12659	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
79852	chr16	1471201	1471400	+	0	NA	intron (NM_001287, intron 1 of 24)	intron (NM_001287, intron 1 of 24)	3728	NM_001287	1186		NM_001287	ENSG00000103249	CLCN7	CLC-7|CLC7|HOD|OPTA2|OPTB4|PPP1R63	chloride voltage-gated channel 7	protein-coding
200784	chr6	137878551	137880000	+	0	NA	exon (NM_001270508, exon 7 of 9)	exon (NM_001270508, exon 7 of 9)	-11042	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
217764	chr8	31236851	31236950	+	0	NA	Intergenic	L1PA4|LINE|L1	203090	NM_000553	7486		NM_000553	ENSG00000165392	WRN	RECQ3|RECQL2|RECQL3	WRN RecQ like helicase	protein-coding
85168	chr16	46758251	46758350	+	0	NA	intron (NM_001308301, intron 1 of 11)	(CA)n|Simple_repeat|Simple_repeat	4946	NM_001308301	91807		NM_182493	ENSG00000140795	MYLK3	MLCK|MLCK2|caMLCK	myosin light chain kinase 3	protein-coding
72394	chr15	31384421	31384980	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	57865	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
196746	chr6	45420501	45421030	+	0	NA	intron (NM_001024630, intron 2 of 8)	intron (NM_001024630, intron 2 of 8)	-1510	NM_001369405	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
148404	chr20	63940371	63940530	+	0	NA	exon (NM_001353476, exon 13 of 15)	exon (NM_001353476, exon 13 of 15)	1094	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
173164	chr4	6690001	6691730	+	0	NA	promoter-TSS (NR_147207)	promoter-TSS (NR_147207)	-346	NR_147207	339988		NR_147207	ENSG00000246526	LINC02481	LINC002481	long intergenic non-protein coding RNA 2481	ncRNA
29949	chr10	73482171	73482530	+	0	NA	intron (NM_001289969, intron 1 of 12)	AluY|SINE|Alu	-13402	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
40422	chr11	64169551	64169850	+	0	NA	Intergenic	Intergenic	-3587	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
142818	chr20	16729721	16730780	+	0	NA	intron (NM_003092, intron 1 of 6)	CpG	224	NM_003092	6629		NM_003092	ENSG00000125870	SNRPB2	Msl1|U2B''	small nuclear ribonucleoprotein polypeptide B2	protein-coding
23754	chr1	232726171	232726330	+	0	NA	Intergenic	Intergenic	8179	NR_146922	105373199		NR_146922	ENSG00000225919	LINC01745	-	long intergenic non-protein coding RNA 1745	ncRNA
27556	chr10	32344221	32344950	+	0	NA	TTS (NR_168506)	TTS (NR_168506)	2573	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
35594	chr11	1751151	1751450	+	0	NA	promoter-TSS (NM_001170820)	promoter-TSS (NM_001170820)	-705	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
197156	chr6	59561521	59561780	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1600204	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
14291	chr1	143787571	143787730	+	0	NA	Intergenic	Intergenic	-4845	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
170232	chr3	184185651	184187550	+	0	NA	exon (NM_018358, exon 2 of 21)	exon (NM_018358, exon 2 of 21)	525	NM_001351299	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
163852	chr3	52485071	52486030	+	0	NA	intron (NM_007184, intron 14 of 20)	intron (NM_007184, intron 14 of 20)	-9788	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
36177	chr11	3171171	3171730	+	0	NA	Intergenic	Intergenic	-6140	NM_145638	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
200266	chr6	132598551	132598650	+	0	NA	Intergenic	Intergenic	-8862	NM_003967	9038		NM_003967	ENSG00000135569	TAAR5	PNR|taR-5	trace amine associated receptor 5	protein-coding
212564	chr7	128886421	128886750	+	0	NA	intron (NM_001366122, intron 25 of 39)	intron (NM_001366122, intron 25 of 39)	20255	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
217286	chr8	27363471	27364650	+	0	NA	intron (NM_173174, intron 6 of 35)	MIRb|SINE|MIR	38496	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
33913	chr10	124596871	124597030	+	0	NA	intron (NM_022126, intron 6 of 6)	MLT2A2|LTR|ERVL	-107078	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
234700	chrX	20437571	20438600	+	0	NA	Intergenic	Intergenic	-171176	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
108201	chr18	63131121	63132050	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	188184	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
122202	chr19	48957851	48958150	+	0	NA	intron (NM_001291428, intron 4 of 5)	L2b|LINE|L2	3125	NM_138761	581		NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
182431	chr5	62225121	62225650	+	0	NA	Intergenic	L1PA7|LINE|L1	-80777	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
53140	chr12	57850121	57850530	+	0	NA	Intergenic	Intergenic	-3596	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
110438	chr19	1978521	1979150	+	0	NA	intron (NM_001319, intron 5 of 11)	CpG-13133	-24286	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
50094	chr12	44845201	44845600	+	0	NA	intron (NM_001145108, intron 2 of 19)	(AGTAC)n|Simple_repeat|Simple_repeat	30261	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
109193	chr19	393101	393430	+	0	NA	Intergenic	L2a|LINE|L2	15882	NM_001136263	126567		NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium dependent domain containing 4C	protein-coding
115572	chr19	15820751	15821200	+	0	NA	Intergenic	Intergenic	-7972	NR_015379	652995		NR_015379	ENSG00000214049	UCA1	CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36	urothelial cancer associated 1	ncRNA
180890	chr5	34022151	34022450	+	0	NA	intron (NM_030945, intron 5 of 5)	MLT1J2-int|LTR|ERVL-MaLR	-14250	NM_014324	23600		NM_014324	ENSG00000242110	AMACR	AMACRD|CBAS4|P504S|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
211497	chr7	105225221	105225680	+	0	NA	intron (NM_001350741, intron 2 of 16)	Helitron3Na_Mam|RC|Helitron	43627	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
126043	chr2	25374951	25375250	+	0	NA	Intergenic	Intergenic	-32510	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
18435	chr1	161473351	161473880	+	0	NA	Intergenic	HERV9NC-int|LTR|ERV1	-31842	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
194444	chr6	33166601	33167100	+	0	NA	intron (NM_080680, intron 58 of 65).6	intron (NM_080680, intron 58 of 65).6	23526	NR_138084	414768		NR_138084		HCG24	-	HLA complex group 24	ncRNA
95364	chr17	35867321	35867650	+	0	NA	intron (NM_152781, intron 1 of 14).2	intron (NM_152781, intron 1 of 14).2	1406	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
73500	chr15	43759121	43759380	+	0	NA	intron (NM_005313, intron 3 of 12)	AluYk4|SINE|Alu	12812	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
226324	chr9	69035471	69036700	+	0	NA	intron (NM_181425, intron 1 of 4)	CpG	333	NM_181425	2395		NM_000144	ENSG00000165060	FXN	CyaY|FA|FARR|FRDA|X25	frataxin	protein-coding
209943	chr7	92621021	92622230	+	0	NA	intron (NM_001145306, intron 6 of 7)	intron (NM_001145306, intron 6 of 7)	-31235	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
14562	chr1	145008451	145009280	+	0	NA	intron (NM_001385227, intron 2 of 8)	A-rich|Low_complexity|Low_complexity	-85431	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
18957	chr1	168553921	168554580	+	0	NA	Intergenic	Intergenic	-10253	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
188195	chr5	150658251	150658600	+	0	NA	3' UTR (NM_007286, exon 3 of 3)	3' UTR (NM_007286, exon 3 of 3)	-2416	NM_133371	91977		NM_133371	ENSG00000164591	MYOZ3	CS-3|CS3|FATZ-3|FRP3	myozenin 3	protein-coding
166999	chr3	125958071	125958750	+	0	NA	intron (NM_001385066, intron 1 of 6)	CpG	-10768	NM_001012337	152015		NM_001012337	ENSG00000114547	ROPN1B	-	rhophilin associated tail protein 1B	protein-coding
211836	chr7	108521851	108522550	+	0	NA	intron (NM_001256011, intron 1 of 10)	AluSx4|SINE|Alu	3935	NM_001256007	50640		NM_015723	ENSG00000135241	PNPLA8	IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma	patatin like phospholipase domain containing 8	protein-coding
201978	chr6	152268051	152268450	+	0	NA	intron (NM_033071, intron 98 of 145)	intron (NM_033071, intron 98 of 145)	-82872	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
7813	chr1	36285371	36286130	+	0	NA	intron (NM_001321471, intron 4 of 12)	intron (NM_001321471, intron 4 of 12)	-20618	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
208337	chr7	66393871	66394130	+	0	NA	intron (NR_026873, intron 3 of 4)	SVA_E|Retroposon|SVA	6408	NR_026873	285908		NM_181722	ENSG00000179406	LINC00174	NCRNA00174	long intergenic non-protein coding RNA 174	ncRNA
210109	chr7	97971501	97972700	+	0	NA	intron (NR_148008, intron 1 of 2)	CpG	258	NR_147989	107986827		NM_001013725		CZ1P-ASNS	-	CZ1P-ASNS readthrough	ncRNA
20187	chr1	193066501	193066700	+	0	NA	intron (NM_001042370, intron 1 of 9)	L2|LINE|L2	-6524	NM_001350852	51377		NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
138339	chr2	203858021	203858500	+	0	NA	Intergenic	Intergenic	-9511	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
123539	chr19	54361371	54362430	+	0	NA	intron (NM_001289027, intron 1 of 8).3	intron (NM_001289027, intron 1 of 8).3	3031	NR_110279	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
97552	chr17	44076971	44077550	+	0	NA	TTS (NM_001384167)	TTS (NM_001384167)	6349	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
211511	chr7	105295671	105295830	+	0	NA	intron (NM_001350742, intron 2 of 16)	L1MB4|LINE|L1	3029	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
101010	chr17	64710421	64710930	+	0	NA	Intergenic	AluSq2|SINE|Alu	-48368	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
62529	chr13	99542701	99543400	+	0	NA	intron (NM_004800, intron 9 of 16)	L2a|LINE|L2	-34062	NR_126390	104355149		NR_126390		LINC01039	-	long intergenic non-protein coding RNA 1039	ncRNA
55456	chr12	104643421	104643880	+	0	NA	intron (NM_018413, intron 2 of 2)	(CA)n|Simple_repeat|Simple_repeat	52017	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
128628	chr2	61356301	61356500	+	0	NA	intron (NM_014709, intron 10 of 79)	AluJb|SINE|Alu	60977	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
121425	chr19	47018801	47019000	+	0	NA	promoter-TSS (NM_002517)	promoter-TSS (NM_002517)	-937	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
145715	chr20	45038871	45039030	+	0	NA	intron (NM_006282, intron 10 of 10)	Charlie1a|DNA|hAT-Charlie	62177	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
114063	chr19	11086221	11086780	+	0	NA	Intergenic	AluY|SINE|Alu	-2963	NM_001195799	3949		NM_000527	ENSG00000130164	LDLR	FH|FHC|FHCL1|LDLCQ2	low density lipoprotein receptor	protein-coding
115465	chr19	15353001	15353700	+	0	NA	TTS (NM_005858)	TTS (NM_005858)	-20811	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
157368	chr22	44704101	44704850	+	0	NA	intron (NM_181334, intron 1 of 14)	intron (NM_181334, intron 1 of 14)	2271	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
218581	chr8	55806771	55806930	+	0	NA	intron (NM_001317902, intron 9 of 10)	intron (NM_001317902, intron 9 of 10)	33404	NM_024831	96764		NM_024831	ENSG00000137574	TGS1	NCOA6IP|PIMT|PIPMT	trimethylguanosine synthase 1	protein-coding
54994	chr12	96353321	96353580	+	0	NA	intron (NM_002595, intron 1 of 16)	Charlie1a|DNA|hAT-Charlie	46989	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
140193	chr2	231677451	231678480	+	0	NA	Intergenic	Intergenic	-30560	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
67718	chr14	73467521	73468100	+	0	NA	Intergenic	Intergenic	-4168	NR_135251	101928143		NR_135251	ENSG00000284930	LOC101928143	-	uncharacterized LOC101928143	ncRNA
108080	chr18	59952921	59953180	+	0	NA	Intergenic	Intergenic	53054	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
84646	chr16	30723121	30723400	+	0	NA	intron (NM_006662, intron 24 of 33)	intron (NM_006662, intron 24 of 33)	12723	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
15624	chr1	150626501	150626980	+	0	NA	TTS (NM_207168)	TTS (NM_207168)	2393	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
107506	chr18	47927771	47927930	+	0	NA	intron (NM_001135937, intron 1 of 9)	AluSp|SINE|Alu	2809	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
85679	chr16	56371851	56372550	+	0	NA	intron (NM_001144, intron 10 of 13)	L1MB2|LINE|L1	52789	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
97044	chr17	42324551	42324850	+	0	NA	intron (NM_001369519, intron 17 of 23)	intron (NM_001369519, intron 17 of 23)	36644	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
81671	chr16	11087851	11088750	+	0	NA	intron (NM_001243403, intron 18 of 20)	MIRc|SINE|MIR	143736	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
146205	chr20	48781621	48782400	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	45989	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
82257	chr16	15135171	15135330	+	0	NA	intron (NR_123721, intron 4 of 28)	intron (NR_123721, intron 4 of 28)	-1100	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
133782	chr2	127700571	127701700	+	0	NA	promoter-TSS (NM_032740)	promoter-TSS (NM_032740)	-362	NM_032740	84826		NM_032740	ENSG00000173349	SFT2D3	-	SFT2 domain containing 3	protein-coding
201034	chr6	141848321	141849000	+	0	NA	Intergenic	Intergenic	-284499	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
110867	chr19	2621651	2622100	+	0	NA	intron (NM_052847, intron 2 of 4)	MLT1C|LTR|ERVL-MaLR	-8840	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
155686	chr22	39073971	39074330	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-2855	NM_001349437	60489		NM_021822	ENSG00000239713	APOBEC3G	A3G|ARCD|ARP-9|ARP9|CEM-15|CEM15|MDS019|bK150C2.7|dJ494G10.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3G	protein-coding
58476	chr12	132146651	132146750	+	0	NA	intron (NM_024078, intron 3 of 14)	MER102a|DNA|hAT-Charlie	2243	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
138033	chr2	201289471	201289630	+	0	NA	non-coding (NR_110620, exon 13 of 14)	non-coding (NR_110620, exon 13 of 14)	29014	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
165873	chr3	106074821	106075480	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-205749	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
237889	chrX	131704801	131705200	+	0	NA	intron (NR_026975, intron 12 of 12)	intron (NR_026975, intron 12 of 12)	125643	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
107887	chr18	56650021	56650330	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-1184	NM_015285	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
140342	chr2	232607271	232607430	+	0	NA	intron (NM_001243252, intron 1 of 3)	AluSx1|SINE|Alu	1293	NM_001243252	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
94900	chr17	31560951	31561050	+	0	NA	TTS (NR_029710)	TTS (NR_029710)	1004	NR_029710	406968		NR_029710	ENSG00000207614	MIR193A	MIRN193|MIRN193A|mir-193a	microRNA 193a	ncRNA
88659	chr16	85652421	85654000	+	0	NA	intron (NM_001278184, intron 2 of 14)	(CCT)n|Simple_repeat|Simple_repeat	35744	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
212105	chr7	116207451	116207750	+	0	NA	Intergenic	Intergenic	-2939	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
34270	chr10	131895471	131895630	+	0	NA	Intergenic	Intergenic	-5458	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
113553	chr19	10237571	10237800	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6354	NM_004230	9294		NM_004230	ENSG00000267534	S1PR2	AGR16|DFNB68|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding
81520	chr16	9053251	9053350	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-38344	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
55305	chr12	103626651	103626750	+	0	NA	intron (NM_017564, intron 5 of 68)	intron (NM_017564, intron 5 of 68)	39427	NM_017564	55576		NM_017564	ENSG00000136011	STAB2	FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1	stabilin 2	protein-coding
201301	chr6	144346901	144348050	+	0	NA	intron (NM_007124, intron 1 of 73)	L2a|LINE|L2	55738	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
166124	chr3	111313071	111313430	+	0	NA	Intergenic	Intergenic	-228947	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
30809	chr10	84802621	84802700	+	0	NA	Intergenic	Intergenic	377491	NM_001284242	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
15977	chr1	151912101	151912850	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2964	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
56162	chr12	111401071	111401780	+	0	NA	Intergenic	MIRc|SINE|MIR	-4498	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
173505	chr4	9510411	9510630	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	45796	NR_031688	100302277		NR_031688	ENSG00000221275	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2	microRNA 548i-2	ncRNA
112737	chr19	7351721	7352130	+	0	NA	intron (NM_001367823, intron 1 of 28)	AluSx|SINE|Alu	2988	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
76339	chr15	74428551	74429130	+	0	NA	intron (NM_001146029, intron 1 of 12)	intron (NM_001146029, intron 1 of 12)	4864	NM_001146030	8482		NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|PFIC11|SEMAK1|SEMAL	semaphorin 7A (JohnMiltonHagen blood group)	protein-coding
4792	chr1	23567851	23567950	+	0	NA	Intergenic	Intergenic	-8399	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
99567	chr17	50467101	50467500	+	0	NA	intron (NM_001267, intron 1 of 3)	intron (NM_001267, intron 1 of 3)	-1029	NR_110232	80221		NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
114369	chr19	12482051	12483350	+	0	NA	intron (NM_152601, intron 1 of 3)	intron (NM_152601, intron 1 of 3)	2116	NM_152601	163051		NM_152601	ENSG00000242852	ZNF709	-	zinc finger protein 709	protein-coding
117316	chr19	19508151	19508900	+	0	NA	non-coding (NR_169268, exon 12 of 12)	non-coding (NR_169268, exon 12 of 12)	7023	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
157396	chr22	44753821	44754150	+	0	NA	intron (NM_181335, intron 1 of 11)	intron (NM_181335, intron 1 of 11)	1410	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
89734	chr16	89429951	89430930	+	0	NA	promoter-TSS (NR_110931)	promoter-TSS (NR_110931)	-478	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
90000	chr16	89877851	89878180	+	0	NA	intron (NM_014972, intron 1 of 17)	AluJb|SINE|Alu	4423	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
109342	chr19	610171	612530	+	0	NA	intron (NM_001194, intron 5 of 7)	CpG	21469	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
42950	chr11	73625471	73626010	+	0	NA	Intergenic	AluSx1|SINE|Alu	-20841	NM_021200	58473		NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding
38088	chr11	35205371	35205530	+	0	NA	intron (NM_001001389, intron 9 of 16)	intron (NM_001001389, intron 9 of 16)	42500	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
21340	chr1	204564551	204565100	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	48419	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
199276	chr6	111867671	111868300	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	5086	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
229677	chr9	124495701	124496300	+	0	NA	intron (NM_004959, intron 4 of 6)	intron (NM_004959, intron 4 of 6)	11399	NM_004959	2516		NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1	nuclear receptor subfamily 5 group A member 1	protein-coding
227479	chr9	91156671	91157950	+	0	NA	intron (NR_135306, intron 2 of 2)	AluJr|SINE|Alu	38248	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
126349	chr2	27407021	27407550	+	0	NA	intron (NM_177983, intron 1 of 9)	AluJb|SINE|Alu	2306	NM_177983	5496		NM_177983	ENSG00000115241	PPM1G	PP2CG|PP2CGAMMA|PPP2CG	protein phosphatase, Mg2+/Mn2+ dependent 1G	protein-coding
156085	chr22	40052551	40053080	+	0	NA	intron (NM_001024843, intron 1 of 23)	L2c|LINE|L2	7998	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
101237	chr17	66195701	66195900	+	0	NA	Intergenic	L2a|LINE|L2	-3667	NM_001199165	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
231239	chr9	129979571	129979930	+	0	NA	intron (NM_001363755, intron 2 of 15)	AluSz|SINE|Alu	63439	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
200298	chr6	132819551	132819950	+	0	NA	Intergenic	Intergenic	2531	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
32145	chr10	101290401	101290800	+	0	NA	Intergenic	Intergenic	-27050	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
95928	chr17	38922471	38922630	+	0	NA	TTS (NM_001271608)	TTS (NM_001271608)	-2618	NR_038847	100505576		NM_001414697	ENSG00000263874	LASP1NB	LINC00672	LASP1 neighbor	protein-coding
39397	chr11	60618551	60618930	+	0	NA	intron (NR_026946, intron 1 of 6)	LTR13|LTR|ERVK	2989	NR_026946	283197		NM_174939	ENSG00000293513	LINC00301	C11orf64|NCRNA00301	long intergenic non-protein coding RNA 301	ncRNA
57832	chr12	123240871	123241030	+	0	NA	intron (NM_001194995, intron 1 of 2)	AluSx|SINE|Alu	7206	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
136672	chr2	180983651	180984230	+	0	NA	intron (NM_001278554, intron 2 of 5)	intron (NM_001278554, intron 2 of 5)	2816	NM_001278554	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
148172	chr20	63534201	63534800	+	0	NA	intron (NM_001256358, intron 1 of 6)	intron (NM_001256358, intron 1 of 6)	2870	NM_001256358	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
71048	chr14	104792221	104792930	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	1026	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
69849	chr14	99254521	99254800	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	17537	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
70746	chr14	103392171	103392600	+	0	NA	intron (NM_002376, intron 1 of 15)	MER5A|DNA|hAT-Charlie	6970	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
203612	chr7	946171	946730	+	0	NA	promoter-TSS (NM_001284309)	promoter-TSS (NM_001284309)	-634	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
50102	chr12	44855901	44856100	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	19661	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
74954	chr15	63805651	63807500	+	0	NA	intron (NM_003922, intron 1 of 77)	intron (NM_003922, intron 1 of 77)	27373	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
166977	chr3	125604451	125604550	+	0	NA	Intergenic	LTR12|LTR|ERV1	-9003	NM_022776	114885		NM_022776	ENSG00000144909	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein like 11	protein-coding
128386	chr2	55043951	55044630	+	0	NA	intron (NM_001321904, intron 2 of 9)	AluJr|SINE|Alu	3036	NM_001321863	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133586	chr2	121679721	121679980	+	0	NA	intron (NR_037857, intron 2 of 3)	LTR23-int|LTR|ERV1	29861	NR_037856	254128		NR_037856	ENSG00000236859	NIFK-AS1	-	NIFK antisense RNA 1	ncRNA
91664	chr17	5526171	5526330	+	0	NA	intron (NM_014922, intron 12 of 15)	AluJb|SINE|Alu	-25244	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
207354	chr7	44079351	44079800	+	0	NA	non-coding (NR_156113, exon 4 of 10)	non-coding (NR_156113, exon 4 of 10)	2955	NM_001284330	27434		NM_013284	ENSG00000122678	POLM	Pol Mu|Tdt-N	DNA polymerase mu	protein-coding
53017	chr12	57545021	57545280	+	0	NA	intron (NM_001348066, intron 2 of 15)	intron (NM_001348066, intron 2 of 15)	1709	NM_001348065	10540		NM_006400	ENSG00000175203	DCTN2	DCTN50|DYNAMITIN|HEL-S-77|RBP50	dynactin subunit 2	protein-coding
163919	chr3	52670051	52670150	+	0	NA	intron (NM_181042, intron 4 of 29)	intron (NM_181042, intron 4 of 29)	15499	NM_001350074	55193		NM_018313	ENSG00000163939	PBRM1	BAF180|PB1|RCC|SMARCH1	polybromo 1	protein-coding
75496	chr15	66388601	66388850	+	0	NA	intron (NM_002755, intron 1 of 10)	intron (NM_002755, intron 1 of 10)	1813	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
230937	chr9	129408821	129409400	+	0	NA	Intergenic	Intergenic	72187	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
100939	chr17	64479651	64480350	+	0	NA	intron (NM_007215, intron 7 of 7)	intron (NM_007215, intron 7 of 7)	17054	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
13189	chr1	112618701	112619200	+	0	NA	promoter-TSS (NM_006135)	promoter-TSS (NM_006135)	191	NM_138727	54879		NM_017744	ENSG00000007341	ST7L	FAM4B|ST7R|STLR	suppression of tumorigenicity 7 like	protein-coding
22462	chr1	221688971	221689530	+	0	NA	Intergenic	Intergenic	47650	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
131998	chr2	100580401	100581880	+	0	NA	Intergenic	Intergenic	18147	NM_024065	79031		NM_024065	ENSG00000115539	PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin like 3	protein-coding
201850	chr6	150235271	150235430	+	0	NA	intron (NM_030949, intron 3 of 3)	AluJr4|SINE|Alu	92306	NM_030949	81706		NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1 regulatory inhibitor subunit 14C	protein-coding
88896	chr16	87764071	87765000	+	0	NA	intron (NM_001351937, intron 1 of 11)	AluSq2|SINE|Alu	1451	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
121316	chr19	46753551	46754530	+	0	NA	intron (NM_001039885, intron 3 of 3)	intron (NM_001039885, intron 3 of 3)	-7590	NM_013403	29888		NM_013403	ENSG00000090372	STRN4	PPP2R6C|ZIN|zinedin	striatin 4	protein-coding
187143	chr5	140545251	140545550	+	0	NA	intron (NM_020690, intron 34 of 35)	AluSg4|SINE|Alu	-2262	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
233169	chr9	137182671	137183530	+	0	NA	intron (NM_013366, intron 6 of 12)	intron (NM_013366, intron 6 of 12)	5460	NM_013366	29882		NM_013366	ENSG00000176248	ANAPC2	APC2	anaphase promoting complex subunit 2	protein-coding
85902	chr16	57070701	57072550	+	0	NA	intron (NM_001384955, intron 37 of 47)	intron (NM_001384955, intron 37 of 47)	-20958	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
103167	chr17	77432121	77432380	+	0	NA	intron (NM_001293696, intron 1 of 9)	MIR|SINE|MIR	-18499	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
193332	chr6	30185901	30186100	+	0	NA	exon (NM_003449, exon 10 of 10).3	exon (NM_003449, exon 10 of 10).3	22454	NM_033229	89870		NM_033229	ENSG00000204610	TRIM15	RNF93|ZNF178|ZNFB7	tripartite motif containing 15	protein-coding
81379	chr16	5055251	5055350	+	0	NA	exon (NM_001098514, exon 6 of 8)	exon (NM_001098514, exon 6 of 8)	10656	NM_001098514	146556		NM_152459	ENSG00000153446	C16orf89	-	chromosome 16 open reading frame 89	protein-coding
189550	chr5	174311771	174312200	+	0	NA	Intergenic	CpG	-24369	NR_125806	101928176		NR_125806	ENSG00000249306	LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
85371	chr16	50272901	50273250	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	6524	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
224715	chr9	21491951	21492050	+	0	NA	intron (NR_152877, intron 1 of 3)	intron (NR_152877, intron 1 of 3)	-9687	NM_176891	338376		NM_176891	ENSG00000184995	IFNE	IFN-E|IFNE1|IFNT1|INFE1|PRO655	interferon epsilon	protein-coding
11324	chr1	89454951	89455400	+	0	NA	Intergenic	Intergenic	47496	NR_003133	400759		NR_003133	ENSG00000290525	GBP1P1	LIMIT	guanylate binding protein 1 pseudogene 1	pseudo
36869	chr11	10457671	10458280	+	0	NA	intron (NM_001025390, intron 1 of 14)	intron (NM_001025390, intron 1 of 14)	1919	NM_001025390	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
186753	chr5	139314851	139315150	+	0	NA	intron (NM_199189, intron 6 of 17)	intron (NM_199189, intron 6 of 17)	21250	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
186904	chr5	139580021	139580280	+	0	NA	intron (NM_181838, intron 2 of 7)	AluJb|SINE|Alu	18811	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
200032	chr6	129686871	129688150	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	22667	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
184845	chr5	111530001	111530900	+	0	NA	intron (NR_040093, intron 1 of 6)	intron (NR_040093, intron 1 of 6)	-17853	NM_001308057	134429		NM_139164	ENSG00000164211	STARD4	-	StAR related lipid transfer domain containing 4	protein-coding
70054	chr14	100128371	100128730	+	0	NA	exon (NM_001330221, exon 6 of 14)	exon (NM_001330221, exon 6 of 14)	18895	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
184370	chr5	97231071	97231300	+	0	NA	Intergenic	Intergenic	-47938	NM_001159749	55781		NM_018343	ENSG00000058729	RIOK2	RIO2	RIO kinase 2	protein-coding
141344	chr2	240588471	240588830	+	0	NA	intron (NM_023085, intron 1 of 9)	L2|LINE|L2	1916	NM_023085	11132		NM_021251	ENSG00000142330	CAPN10	CANP10|NIDDM1	calpain 10	protein-coding
176638	chr4	99874721	99875130	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	19502	NM_021970	8649		NM_021970	ENSG00000109270	LAMTOR3	MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding
96095	chr17	39619251	39620280	+	0	NA	Intergenic	MIRb|SINE|MIR	-7187	NM_032192	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
92466	chr17	8633821	8634080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3189	NM_001256095	4628		NM_005964	ENSG00000133026	MYH10	NMMHC-IIB|NMMHCB	myosin heavy chain 10	protein-coding
190803	chr6	1379401	1379880	+	0	NA	Intergenic	CpG	-9936	NM_001452	2295		NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
149939	chr21	36317801	36318750	+	0	NA	Intergenic	AluYc|SINE|Alu	-1914	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
66682	chr14	63988601	63988800	+	0	NA	intron (NM_015180, intron 19 of 114)	THE1B|LTR|ERVL-MaLR	106425	NR_031677	100313830		NR_031677	ENSG00000221537	MIR548H1	MIR548H-1|MIRN548H1	microRNA 548h-1	ncRNA
78785	chr15	99433201	99434050	+	0	NA	Intergenic	Intergenic	-131792	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
58115	chr12	124880421	124881350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17021	NM_001082959	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
148229	chr20	63623701	63624080	+	0	NA	intron (NM_012384, intron 1 of 9)	AluSx|SINE|Alu	3211	NM_012384	26205		NM_012384	ENSG00000101216	GMEB2	GMEB-2|P79PIF|PIF79	glucocorticoid modulatory element binding protein 2	protein-coding
157841	chr22	48098271	48099900	+	0	NA	Intergenic	Intergenic	-175279	NR_036172	100422916		NR_036172	ENSG00000266508	MIR3201	-	microRNA 3201	ncRNA
154727	chr22	36457471	36458330	+	0	NA	Intergenic	MIR3|SINE|MIR	23740	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
63228	chr13	113904321	113904730	+	0	NA	intron (NR_164112, intron 3 of 7)	intron (NR_164112, intron 3 of 7)	9422	NR_164112	643365		NM_001039767	ENSG00000229373	LINC00452	LINC00453	long intergenic non-protein coding RNA 452	ncRNA
147840	chr20	62790051	62790630	+	0	NA	Intergenic	Intergenic	-6133	NM_018270	55257		NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG domain binding protein	protein-coding
29767	chr10	72254701	72255700	+	0	NA	Intergenic	Intergenic	-18724	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
186654	chr5	138571071	138571430	+	0	NA	intron (NM_004134, intron 3 of 16)	AluSx|SINE|Alu	4151	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
219121	chr8	66009951	66010250	+	0	NA	Intergenic	Intergenic	-4878	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
96060	chr17	39547621	39548180	+	0	NA	Intergenic	Intergenic	60020	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
147375	chr20	58447751	58448080	+	0	NA	non-coding (NR_036633, exon 4 of 4)	non-coding (NR_036633, exon 4 of 4)	58686	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
231148	chr9	129868511	129870350	+	0	NA	promoter-TSS (NR_106914)	promoter-TSS (NR_106914)	-175	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
70542	chr14	102516551	102517980	+	0	NA	Intergenic	CpG	-7489	NM_001348652	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
37139	chr11	13388451	13388950	+	0	NA	3' UTR (NM_001297742, exon 8 of 8)	3' UTR (NM_001297742, exon 8 of 8)	51579	NM_001297742	84280		NM_032320	ENSG00000148925	BTBD10	GMRP-1|GMRP1	BTB domain containing 10	protein-coding
211479	chr7	105112601	105113200	+	0	NA	exon (NM_018682, exon 26 of 26)	exon (NM_018682, exon 26 of 26)	98695	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
48153	chr12	7927351	7927650	+	0	NA	intron (NM_006931, intron 6 of 9)	intron (NM_006931, intron 6 of 9)	8687	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
53834	chr12	69512001	69512200	+	0	NA	intron (NM_001278354, intron 2 of 9)	intron (NM_001278354, intron 2 of 9)	-3340	NR_145803	109623461		NR_145803		SNORA113	-	small nucleolar RNA, H/ACA box 113	snoRNA
52354	chr12	55590221	55590480	+	0	NA	Intergenic	L1PA3|LINE|L1	15935	NM_001258285	121129		NM_001258285	ENSG00000179615	OR2AP1	OR2AP1P	olfactory receptor family 2 subfamily AP member 1	protein-coding
31745	chr10	97769901	97770100	+	0	NA	intron (NM_003015, intron 1 of 2)	intron (NM_003015, intron 1 of 2)	1999	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
170066	chr3	182904071	182904230	+	0	NA	intron (NM_014616, intron 28 of 29)	MIR3|SINE|MIR	76388	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
239173	chrY	12420971	12421530	+	0	NA	intron (NR_033667, intron 1 of 4)	CpG	340	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
27752	chr10	35197971	35198680	+	0	NA	intron (NM_001352446, intron 1 of 2)	AluSg|SINE|Alu	2423	NM_182724	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
77668	chr15	85582101	85583650	+	0	NA	intron (NM_007200, intron 7 of 36)	intron (NM_007200, intron 7 of 36)	-37075	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
184527	chr5	102229851	102230150	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	66284	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
196542	chr6	44044601	44044800	+	0	NA	intron (NR_125864, intron 1 of 4)	(CA)n|Simple_repeat|Simple_repeat	29952	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
25640	chr10	8216901	8217100	+	0	NA	Intergenic	Intergenic	51305	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
11968	chr1	94045551	94045980	+	0	NA	intron (NM_000350, intron 19 of 49)	intron (NM_000350, intron 19 of 49)	75383	NM_000350	24		NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
229699	chr9	124754421	124754700	+	0	NA	intron (NM_001278546, intron 1 of 9)	intron (NM_001278546, intron 1 of 9)	16751	NM_033334	2649		NM_001489	ENSG00000148200	NR6A1	CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR	nuclear receptor subfamily 6 group A member 1	protein-coding
198617	chr6	107736121	107737900	+	0	NA	intron (NM_001286408, intron 4 of 6)	intron (NM_001286408, intron 4 of 6)	-4860	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
4269	chr1	19658151	19659030	+	0	NA	TTS (NM_001204086)	TTS (NM_001204086)	-6285	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
6467	chr1	28286221	28286680	+	0	NA	Intergenic	Intergenic	26932	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
171380	chr3	196127351	196128100	+	0	NA	Intergenic	Intergenic	-14911	NR_034088	401109		NM_001001699	ENSG00000224652	LINC00885	-	long intergenic non-protein coding RNA 885	ncRNA
228216	chr9	97857601	97857800	+	0	NA	TTS (NM_004473)	TTS (NM_004473)	4474	NM_004473	2304		NM_004473	ENSG00000178919	FOXE1	BAMLAZ|FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2	forkhead box E1	protein-coding
148047	chr20	63230751	63231150	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-4955	NM_139317	79444		NM_022161	ENSG00000101197	BIRC7	KIAP|LIVIN|ML-IAP|MLIAP|RNF50	baculoviral IAP repeat containing 7	protein-coding
45173	chr11	117228901	117229100	+	0	NA	intron (NM_004716, intron 3 of 16)	MIR|SINE|MIR	3073	NM_004716	9159		NM_004716	ENSG00000160613	PCSK7	LPC|PC7|PC8|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding
182223	chr5	56856921	56857180	+	0	NA	intron (NM_005921, intron 2 of 19)	intron (NM_005921, intron 2 of 19)	41501	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
10573	chr1	67307371	67308300	+	0	NA	promoter-TSS (NM_001374259)	promoter-TSS (NM_001374259)	-38	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
113085	chr19	8264601	8264800	+	0	NA	Intergenic	FLAM_C|SINE|Alu	43658	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
130278	chr2	84876471	84877300	+	0	NA	intron (NM_001307978, intron 1 of 4)	intron (NM_001307978, intron 1 of 4)	4199	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
164211	chr3	56890871	56891830	+	0	NA	intron (NM_001377407, intron 3 of 12)	(T)n|Simple_repeat|Simple_repeat	25086	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
23046	chr1	226603351	226604050	+	0	NA	3' UTR (NM_001003665, exon 4 of 4)	3' UTR (NM_001003665, exon 4 of 4)	54936	NM_001003665	375057		NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
227497	chr9	91195921	91196180	+	0	NA	Intergenic	Intergenic	76988	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
100751	chr17	63948671	63949530	+	0	NA	intron (NM_000334, intron 15 of 23)	intron (NM_000334, intron 15 of 23)	-16769	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
177884	chr4	128816601	128817300	+	0	NA	intron (NM_001287443, intron 1 of 10)	AluSz6|SINE|Alu	5106	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
49277	chr12	19624001	19624200	+	0	NA	Intergenic	Intergenic	183501	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
221286	chr8	122916921	122917280	+	0	NA	intron (NM_001362797, intron 3 of 4)	intron (NM_001362797, intron 3 of 4)	108672	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
178310	chr4	145307871	145308030	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	32469	NR_147156	105377466		NR_147156	ENSG00000272727	LINC02266	-	long intergenic non-protein coding RNA 2266	ncRNA
237253	chrX	110237171	110237700	+	0	NA	intron (NM_001025580, intron 1 of 4)	intron (NM_001025580, intron 1 of 4)	-12375	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
170098	chr3	183100501	183100700	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1013	NR_120639	56922		NM_020166	ENSG00000078070	MCCC1	MCC-B|MCCA|MCCCalpha	methylcrotonyl-CoA carboxylase subunit 1	protein-coding
194007	chr6	31793651	31793750	+	0	NA	intron (NM_006295, intron 2 of 29).4	L2a|LINE|L2	2052	NM_006295	7407		NM_006295	ENSG00000204394	VARS1	G7A|NDMSCA|VARS|VARS2	valyl-tRNA synthetase 1	protein-coding
182347	chr5	59238601	59238800	+	0	NA	intron (NM_001364600, intron 3 of 7)	intron (NM_001364600, intron 3 of 7)	37415	NM_001197220	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
115776	chr19	16355021	16355880	+	0	NA	non-coding (NR_047665, exon 23 of 23)	non-coding (NR_047665, exon 23 of 23)	30624	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
191687	chr6	13538171	13538480	+	0	NA	Intergenic	Intergenic	-35949	NM_001376799	23408		NM_012241	ENSG00000124523	SIRT5	SIR2L5	sirtuin 5	protein-coding
206692	chr7	36505921	36506180	+	0	NA	Intergenic	LTR9|LTR|ERV1	94070	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
222442	chr8	135456671	135458430	+	0	NA	promoter-TSS (NM_006558)	promoter-TSS (NM_006558)	94	NM_006558	10656		NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH RNA binding domain containing, signal transduction associated 3	protein-coding
52633	chr12	56274951	56275550	+	0	NA	intron (NM_004077, intron 7 of 10)	intron (NM_004077, intron 7 of 10)	7924	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
208441	chr7	66849371	66849530	+	0	NA	intron (NR_135738, intron 2 of 6)	AluSp|SINE|Alu	2000	NR_135738	101929580		NR_135738		GTF2IP23	-	general transcription factor IIi pseudogene 23	pseudo
191719	chr6	13686351	13686700	+	0	NA	intron (NM_005493, intron 2 of 13)	AluSx|SINE|Alu	25310	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
227511	chr9	91359521	91360180	+	0	NA	intron (NM_001698, intron 1 of 9)	intron (NM_001698, intron 1 of 9)	2068	NM_001698	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
93554	chr17	19072001	19072600	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-8164	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
44390	chr11	103055251	103055550	+	0	NA	3' UTR (NM_001318740, exon 7 of 7)	3' UTR (NM_001318740, exon 7 of 7)	36760	NM_032299	84259		NM_032299	ENSG00000137692	DCUN1D5	DCNL5|SCCRO5	defective in cullin neddylation 1 domain containing 5	protein-coding
97756	chr17	44467251	44467550	+	0	NA	intron (NM_001304940, intron 3 of 9)	MamRTE1|LINE|RTE-BovB	-30549	NM_001304943	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
62370	chr13	99228721	99229600	+	0	NA	intron (NR_026644, intron 1 of 8)	intron (NR_026644, intron 1 of 8)	28306	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
156553	chr22	41439571	41440030	+	0	NA	intron (NM_016272, intron 1 of 1)	AluSx1|SINE|Alu	7001	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
14766	chr1	146033951	146034300	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12390	NM_145277	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
168680	chr3	150590551	150590850	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-12621	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
187392	chr5	141882951	141884100	+	0	NA	Intergenic	CpG	-5115	NM_002587	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
102935	chr17	76625971	76626130	+	0	NA	exon (NM_001289107, exon 8 of 10)	exon (NM_001289107, exon 8 of 10)	17707	NM_018414	55808		NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding
159750	chr3	16262801	16263350	+	0	NA	intron (NM_001047434, intron 1 of 1)	L2a|LINE|L2	1868	NM_001047434	285381		NM_206831	ENSG00000154813	DPH3	DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2	diphthamide biosynthesis 3	protein-coding
67386	chr14	69781901	69782130	+	0	NA	intron (NM_003049, intron 2 of 4)	intron (NM_003049, intron 2 of 4)	-14302	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
131966	chr2	100071551	100071650	+	0	NA	intron (NM_001025108, intron 2 of 23)	intron (NM_001025108, intron 2 of 23)	33983	NM_001025108	3899		NM_002285	ENSG00000144218	AFF3	KINS|LAF4|MLLT2-like	ALF transcription elongation factor 3	protein-coding
88351	chr16	84558751	84558850	+	0	NA	Intergenic	AluJr|SINE|Alu	-54141	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
171234	chr3	195781871	195782030	+	0	NA	exon (NM_001322468, exon 11 of 42)	exon (NM_001322468, exon 11 of 42)	29979	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
51605	chr12	52867421	52868150	+	0	NA	Intergenic	Intergenic	-18791	NM_173352	196374		NM_173352	ENSG00000170423	KRT78	CK-78|K5B|K78|Kb40	keratin 78	protein-coding
227836	chr9	93463501	93463980	+	0	NA	intron (NM_001286723, intron 1 of 9)	intron (NM_001286723, intron 1 of 9)	-10139	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
162493	chr3	48568721	48569280	+	0	NA	intron (NM_000094, intron 103 of 118)	intron (NM_000094, intron 103 of 118)	-5219	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
185682	chr5	131787371	131787530	+	0	NA	intron (NM_133372, intron 1 of 17)	intron (NM_133372, intron 1 of 17)	9567	NM_001008738	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
93042	chr17	17313321	17313900	+	0	NA	intron (NM_020201, intron 2 of 4)	L2b|LINE|L2	10237	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
155328	chr22	38216601	38217050	+	0	NA	TTS (NM_012323)	TTS (NM_012323)	7895	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
198789	chr6	108904721	108905000	+	0	NA	intron (NM_001286609, intron 7 of 16)	intron (NM_001286609, intron 7 of 16)	19243	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
149751	chr21	34612251	34613080	+	0	NA	intron (NM_004414, intron 1 of 3)	intron (NM_004414, intron 1 of 3)	1178	NM_001285389	1827		NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
76631	chr15	75576801	75577150	+	0	NA	intron (NM_002833, intron 1 of 12)	intron (NM_002833, intron 1 of 12)	2340	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
124181	chr19	56147971	56149150	+	0	NA	intron (NM_018337, intron 3 of 4)	intron (NM_018337, intron 3 of 4)	7273	NM_001253792	55311		NM_018337	ENSG00000167685	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
44365	chr11	102464971	102465350	+	0	NA	Intergenic	Intergenic	-2095	NR_135076	102723838		NR_135076	ENSG00000255482	LOC102723838	-	uncharacterized LOC102723838	ncRNA
133807	chr2	127808371	127809050	+	0	NA	intron (NM_001006623, intron 1 of 7)	AluSz|SINE|Alu	2461	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
181258	chr5	39217101	39218350	+	0	NA	intron (NM_001349333, intron 1 of 19)	intron (NM_001349333, intron 1 of 19)	1838	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
203809	chr7	1296451	1296600	+	0	NA	Intergenic	L2b|LINE|L2	63653	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
168569	chr3	148989521	148989780	+	0	NA	Intergenic	Intergenic	-1758	NM_001184721	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
117425	chr19	19638971	19639130	+	0	NA	intron (NM_001288998, intron 7 of 19)	AluSx|SINE|Alu	4607	NM_001288998	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
161610	chr3	43215771	43216280	+	0	NA	Intergenic	Intergenic	-70487	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
107702	chr18	49560201	49560400	+	0	NA	Intergenic	AluJr|SINE|Alu	-1757	NM_001308006	9388		NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding
89970	chr16	89820701	89820900	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4153	NM_000135	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
77377	chr15	82836321	82836950	+	0	NA	TTS (NM_001080435)	TTS (NM_001080435)	27007	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
216820	chr8	22573471	22573630	+	0	NA	intron (NM_005775, intron 20 of 20)	MER3|DNA|hAT-Charlie	-5191	NM_021630	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
120189	chr19	42273901	42274530	+	0	NA	exon (NM_001304815, exon 2 of 21)	exon (NM_001304815, exon 2 of 21)	4963	NM_001379482	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
25011	chr10	3315051	3315150	+	0	NA	Intergenic	Intergenic	-3595	NR_131187	105376360		NR_131187		LOC105376360	-	uncharacterized LOC105376360	ncRNA
21019	chr1	202952671	202953030	+	0	NA	intron (NM_015999, intron 1 of 7)	intron (NM_015999, intron 1 of 7)	5134	NM_001290553	51094		NM_015999	ENSG00000159346	ADIPOR1	ACDCR1|CGI-45|CGI45|PAQR1|TESBP1A	adiponectin receptor 1	protein-coding
96325	chr17	40018351	40019450	+	0	NA	TTS (NM_001267797)	TTS (NM_001267797)	3460	NM_001178147	1440		NM_000759	ENSG00000108342	CSF3	C17orf33|CSF3OS|GCSF	colony stimulating factor 3	protein-coding
211446	chr7	105077701	105077930	+	0	NA	intron (NM_182931, intron 11 of 26)	intron (NM_182931, intron 11 of 26)	63610	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
37906	chr11	34085451	34085550	+	0	NA	intron (NM_203364, intron 9 of 17)	intron (NM_203364, intron 9 of 17)	-20129	NM_001144030	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
77179	chr15	80152111	80153750	+	0	NA	promoter-TSS (NM_000137)	promoter-TSS (NM_000137)	-69	NM_000137	2184		NM_000137	ENSG00000103876	FAH	-	fumarylacetoacetate hydrolase	protein-coding
92280	chr17	8073551	8074530	+	0	NA	intron (NM_001139, intron 12 of 14)	intron (NM_001139, intron 12 of 14)	13676	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
208712	chr7	73303201	73303400	+	0	NA	3' UTR (NM_001168347, exon 10 of 10)	3' UTR (NM_001168347, exon 10 of 10)	5526	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
222711	chr8	141310751	141310850	+	0	NA	Intergenic	AluSz|SINE|Alu	-2512	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
42452	chr11	69337171	69338380	+	0	NA	Intergenic	L1ME1|LINE|L1	43620	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
97276	chr17	43027851	43028650	+	0	NA	intron (NM_005440, intron 4 of 4)	intron (NM_005440, intron 4 of 4)	3019	NM_005440	8153		NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
9319	chr1	46534871	46535330	+	0	NA	intron (NM_001357063, intron 1 of 2)	intron (NM_001357063, intron 1 of 2)	415	NM_001357063	105378696		NM_001357063	ENSG00000282881	TMEM275	-	transmembrane protein 275	protein-coding
96473	chr17	40248201	40248500	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSx1|SINE|Alu	29046	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
24406	chr1	243251601	243252200	+	0	NA	intron (NM_001042405, intron 1 of 18).2	intron (NM_001042405, intron 1 of 18).2	3381	NM_014812	9859		NM_014812	ENSG00000143702	CEP170	FAM68A|KAB|KIAA0470	centrosomal protein 170	protein-coding
152143	chr22	19984101	19985480	+	0	NA	intron (NM_001670, intron 3 of 19)	intron (NM_001670, intron 3 of 19)	21037	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
166808	chr3	122589401	122589600	+	0	NA	intron (NM_001113523, intron 1 of 11)	L1MB7|LINE|L1	11850	NM_001308320	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
16690	chr1	155203021	155203900	+	0	NA	intron (NM_001252607, intron 4 of 21)	intron (NM_001252607, intron 4 of 21)	4437	NM_001252608	7059		NM_007112	ENSG00000169231	THBS3	TSP3	thrombospondin 3	protein-coding
102502	chr17	75767071	75767830	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-2258	NM_000154	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
235671	chrX	48578371	48579180	+	0	NA	3' UTR (NM_006743, exon 7 of 7)	3' UTR (NM_006743, exon 7 of 7)	4291	NM_006743	5935		NM_006743	ENSG00000102317	RBM3	IS1-RNPL|RNPL	RNA binding motif protein 3	protein-coding
133301	chr2	113626401	113627830	+	0	NA	promoter-TSS (NM_001354405)	promoter-TSS (NM_001354405)	23	NR_024531	118433		NR_000029		RPL23AP7	RPL23AL1|RPL23A_6_267|bA395L14.9	ribosomal protein L23a pseudogene 7	pseudo
128501	chr2	59886601	59887000	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	496236	NR_132991	106660609		NR_132991	ENSG00000228590	MIR4432HG	-	MIR4432 host gene	ncRNA
199138	chr6	111718371	111718600	+	0	NA	intron (NM_001370529, intron 2 of 11)	intron (NM_001370529, intron 2 of 11)	40646	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
118554	chr19	36133501	36133700	+	0	NA	Intergenic	Intergenic	-6466	NM_001003962	826		NM_001749	ENSG00000126247	CAPNS1	CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1|PPH6	calpain small subunit 1	protein-coding
42234	chr11	68076471	68076630	+	0	NA	intron (NM_212469, intron 2 of 10)	intron (NM_212469, intron 2 of 10)	31756	NR_106811	102465451		NR_106811	ENSG00000275022	MIR6753	hsa-mir-6753	microRNA 6753	ncRNA
220566	chr8	100724651	100725100	+	0	NA	Intergenic	L2b|LINE|L2	-2787	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
221663	chr8	125963501	125963700	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-12403	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
196797	chr6	45801671	45802100	+	0	NA	Intergenic	MER121|DNA|hAT?	135712	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
97083	chr17	42403051	42403650	+	0	NA	3' UTR (NM_012232, exon 2 of 2)	3' UTR (NM_012232, exon 2 of 2)	-14908	NM_001384989	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
215623	chr7	159246801	159247000	+	0	NA	Intergenic	L1ME1|LINE|L1	-101943	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
133034	chr2	112052771	112053130	+	0	NA	Intergenic	MER41D|LTR|ERV1	-2319	NM_032824	84910		NM_032824	ENSG00000153214	TMEM87B	-	transmembrane protein 87B	protein-coding
16665	chr1	155179651	155179950	+	0	NA	exon (NM_001282378, exon 7 of 9)	exon (NM_001282378, exon 7 of 9)	5046	NM_001256601	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
201782	chr6	149969571	149970030	+	0	NA	intron (NM_025218, intron 3 of 4)	intron (NM_025218, intron 3 of 4)	5857	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
104759	chr17	81693851	81694600	+	0	NA	TTS (NR_106844)	TTS (NR_106844)	468	NR_106844	102465471		NR_106844	ENSG00000277784	MIR6786	hsa-mir-6786	microRNA 6786	ncRNA
131612	chr2	96911701	96911900	+	0	NA	intron (NM_001122646, intron 12 of 16)	intron (NM_001122646, intron 12 of 16)	-7306	NR_110209	101927053		NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
234757	chrX	23732821	23733230	+	0	NA	intron (NM_001330259, intron 2 of 13)	intron (NM_001330259, intron 2 of 13)	10251	NM_001330259	23597		NM_012332	ENSG00000123130	ACOT9	ACATE2|CGI-16|MT-ACT48|MTACT48	acyl-CoA thioesterase 9	protein-coding
98854	chr17	48456571	48456750	+	0	NA	intron (NR_110804, intron 5 of 5)	intron (NR_110804, intron 5 of 5)	11827	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
192152	chr6	17015051	17016330	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-86360	NM_001190766	401236		NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
160219	chr3	23942121	23942380	+	0	NA	intron (NM_001377380, intron 1 of 4)	AluSz6|SINE|Alu	-3036	NM_005126	9975		NM_005126	ENSG00000174738	NR1D2	BD73|EAR-1R|REVERBB|REVERBbeta|RVR	nuclear receptor subfamily 1 group D member 2	protein-coding
94402	chr17	28978071	28978430	+	0	NA	intron (NM_178860, intron 3 of 16)	L2b|LINE|L2	-26732	NM_001290131	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
103239	chr17	77506321	77506930	+	0	NA	Intergenic	Intergenic	-20376	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
82531	chr16	18345071	18345880	+	0	NA	non-coding (NR_146336, exon 14 of 35).2	non-coding (NR_146336, exon 14 of 35).2	-1396	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
27272	chr10	30034321	30034780	+	0	NA	intron (NM_020848, intron 2 of 3)	intron (NM_020848, intron 2 of 3)	25036	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
233237	chr9	137251621	137252700	+	0	NA	intron (NM_001004353, intron 3 of 5)	intron (NM_001004353, intron 3 of 5)	874	NR_046339	441476		NM_001004353	ENSG00000197768	STPG3	C9orf173	sperm-tail PG-rich repeat containing 3	protein-coding
215724	chr8	1756421	1756680	+	0	NA	Intergenic	Intergenic	6784	NR_134302	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
60559	chr13	41490901	41491300	+	0	NA	Intergenic	Intergenic	33550	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
49757	chr12	31749051	31749750	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-20226	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
182841	chr5	69334721	69335430	+	0	NA	Intergenic	Intergenic	-2274	NM_176816	202243		NM_176816	ENSG00000183323	CCDC125	KENAE	coiled-coil domain containing 125	protein-coding
138682	chr2	213065971	213066680	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	84112	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
221764	chr8	127859571	127860130	+	0	NA	intron (NR_003367, intron 1 of 8)	intron (NR_003367, intron 1 of 8)	63888	NR_031609	100302185		NR_031609	ENSG00000283710	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
75285	chr15	65101371	65102130	+	0	NA	intron (NM_001163692, intron 3 of 5)	L2c|LINE|L2	13450	NM_001163692	390595		NM_001163692	ENSG00000246922	UBAP1L	UBAP-1L	ubiquitin associated protein 1 like	protein-coding
212913	chr7	130905251	130905350	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	8010	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
146182	chr20	48754201	48754600	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	73599	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
127206	chr2	38582651	38582750	+	0	NA	intron (NM_138394, intron 4 of 12)	AluSx1|SINE|Alu	20228	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
56908	chr12	120368871	120370300	+	0	NA	promoter-TSS (NM_002442)	promoter-TSS (NM_002442)	-421	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
11094	chr1	85296571	85296930	+	0	NA	Intergenic	AluSq|SINE|Alu	-20118	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
110848	chr19	2567601	2567800	+	0	NA	intron (NM_052847, intron 2 of 4)	MER58B|DNA|hAT-Charlie	-63015	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
36520	chr11	6473101	6474940	+	0	NA	promoter-TSS (NM_001248007)	promoter-TSS (NM_001248007)	-36	NM_006458	10612		NM_006458	ENSG00000110171	TRIM3	BERP|HAC1|RNF22|RNF97	tripartite motif containing 3	protein-coding
194834	chr6	34397671	34398430	+	0	NA	intron (NM_001202470, intron 5 of 8)	SVA_F|Retroposon|SVA	-5381	NM_006703	11165		NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
28163	chr10	43608271	43608430	+	0	NA	intron (NM_001318143, intron 2 of 2)	intron (NM_001318143, intron 2 of 2)	1912	NM_145312	220992		NM_145312	ENSG00000198298	ZNF485	-	zinc finger protein 485	protein-coding
158075	chr22	49965621	49966750	+	0	NA	Intergenic	Intergenic	3319	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
212282	chr7	123728321	123728580	+	0	NA	intron (NM_003941, intron 1 of 10)	intron (NM_003941, intron 1 of 10)	20553	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
12348	chr1	101178521	101179280	+	0	NA	Intergenic	Intergenic	57628	NR_104626	101928370		NR_104626		S1PR1-DT	LISPR1	S1PR1 divergent transcript	ncRNA
162215	chr3	47033071	47033630	+	0	NA	intron (NR_146158, intron 19 of 21)	L2c|LINE|L2	21808	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
44020	chr11	94968371	94968750	+	0	NA	intron (NM_001363371, intron 5 of 6)	intron (NM_001363371, intron 5 of 6)	4996	NM_016403	51503		NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
213499	chr7	139058021	139058500	+	0	NA	intron (NM_020119, intron 9 of 12)	AluJb|SINE|Alu	-14103	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
37337	chr11	14856721	14856980	+	0	NA	intron (NM_001363569, intron 12 of 15)	AluY|SINE|Alu	34821	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
59892	chr13	30736871	30737030	+	0	NA	intron (NM_001629, intron 1 of 4)	L2a|LINE|L2	1407	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
46299	chr11	124878451	124879350	+	0	NA	intron (NR_163413, intron 4 of 8)	intron (NR_163413, intron 4 of 8)	2086	NM_001370357	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
205175	chr7	7568151	7568480	+	0	NA	intron (NM_019005, intron 3 of 12)	intron (NM_019005, intron 3 of 12)	289	NM_001370078	54468		NM_019005	ENSG00000164654	MIOS	MIO|Sea4|Yulink	meiosis regulator for oocyte development	protein-coding
59923	chr13	31132851	31133150	+	0	NA	Intergenic	AluSz|SINE|Alu	28904	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
157347	chr22	44676471	44677600	+	0	NA	promoter-TSS (NM_015366)	promoter-TSS (NM_015366)	-50	NM_015366	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
80227	chr16	2187321	2187580	+	0	NA	exon (NM_020764, exon 7 of 20)	exon (NM_020764, exon 7 of 20)	9155	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
47762	chr12	6544901	6545100	+	0	NA	intron (NM_001039670, intron 8 of 9)	AluY|SINE|Alu	9736	NM_001256799	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
123728	chr19	55056251	55056350	+	0	NA	intron (NM_001145971, intron 3 of 6).10	AluSx|SINE|Alu	6848	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
36671	chr11	8222951	8223050	+	0	NA	Intergenic	Intergenic	40878	NR_073006	4004		NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
229970	chr9	126723201	126725000	+	0	NA	Intergenic	L2c|LINE|L2	-80906	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
157223	chr22	43207971	43208130	+	0	NA	intron (NM_173050, intron 20 of 21)	L2c|LINE|L2	-4624	NR_134632	105373051		NR_134632	ENSG00000236272	SCUBE1-AS2	-	SCUBE1 antisense RNA 2	ncRNA
129018	chr2	64873001	64873880	+	0	NA	Intergenic	Intergenic	-9809	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
177011	chr4	106238801	106239100	+	0	NA	intron (NM_033115, intron 10 of 23)	L1MCa|LINE|L1	-76660	NM_001142415	9255		NM_004757	ENSG00000164022	AIMP1	EMAP2|EMAPII|HLD3|SCYE1|p43	aminoacyl tRNA synthetase complex interacting multifunctional protein 1	protein-coding
83596	chr16	28179221	28179780	+	0	NA	intron (NM_001270940, intron 3 of 24)	MIR3|SINE|MIR	32465	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
87794	chr16	75460871	75461900	+	0	NA	intron (NM_001304998, intron 1 of 2)	intron (NM_001304998, intron 1 of 2)	3058	NM_001304997	124491		NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
178163	chr4	142361221	142361680	+	0	NA	intron (NM_001385334, intron 6 of 24)	MLT1J|LTR|ERVL-MaLR	41683	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
143403	chr20	29409321	29409580	+	0	NA	Intergenic	Intergenic	7511	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
19407	chr1	174167801	174168000	+	0	NA	intron (NM_001366447, intron 1 of 20)	intron (NM_001366447, intron 1 of 20)	8380	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
65530	chr14	51914951	51915430	+	0	NA	TTS (NR_126331)	TTS (NR_126331)	3381	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
95874	chr17	38861401	38861950	+	0	NA	Intergenic	Intergenic	-7954	NM_000978	9349		NM_000978	ENSG00000125691	RPL23	L23|rpL17|uL14	ribosomal protein L23	protein-coding
9700	chr1	53089071	53089430	+	0	NA	intron (NM_001287595, intron 9 of 10)	(GTTT)n|Simple_repeat|Simple_repeat	27037	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
27625	chr10	32942021	32942680	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	-6792	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
115749	chr19	16317321	16317580	+	0	NA	Intergenic	AluSp|SINE|Alu	-7376	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
40920	chr11	65213471	65214530	+	0	NA	non-coding (NR_033396, exon 1 of 10)	non-coding (NR_033396, exon 1 of 10)	160	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
122185	chr19	48925371	48926080	+	0	NA	Intergenic	AluJo|SINE|Alu	-6834	NR_046633	100874085		NR_046633	ENSG00000235191	NUCB1-AS1	-	NUCB1 antisense RNA 1	ncRNA
159882	chr3	16850571	16850730	+	0	NA	Intergenic	Intergenic	-34305	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
235358	chrX	44542501	44543380	+	0	NA	promoter-TSS (NM_173794)	promoter-TSS (NM_173794)	-81	NM_173794	139341		NM_173794	ENSG00000069509	FUNDC1	-	FUN14 domain containing 1	protein-coding
165091	chr3	71491151	71491850	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	50589	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
81177	chr16	4464351	4464680	+	0	NA	intron (NR_147845, intron 4 of 6)	intron (NR_147845, intron 4 of 6)	10110	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
12702	chr1	109490451	109491450	+	0	NA	exon (NM_153340, exon 10 of 11)	exon (NM_153340, exon 10 of 11)	-3086	NM_001134402	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
837	chr1	1593701	1594150	+	0	NA	Intergenic	Intergenic	-5508	NR_147951	105378586		NR_147951		LOC105378586	-	uncharacterized LOC105378586	ncRNA
45008	chr11	117001201	117001400	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSx|SINE|Alu	97128	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
233010	chr9	137012751	137012850	+	0	NA	exon (NM_001606, exon 31 of 49)	exon (NM_001606, exon 31 of 49)	-14664	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
79918	chr16	1720771	1720930	+	0	NA	intron (NM_001318852, intron 1 of 31)	AluSc8|SINE|Alu	-14135	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
152392	chr22	20533521	20534430	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	25928	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
220598	chr8	100910101	100911080	+	0	NA	Intergenic	Intergenic	39981	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
206918	chr7	38216821	38217180	+	0	NA	intron (NM_001363343, intron 5 of 8)	intron (NM_001363343, intron 5 of 8)	38755	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
112312	chr19	5891701	5893150	+	0	NA	3' UTR (NM_001193375, exon 4 of 4)	3' UTR (NM_001193375, exon 4 of 4)	11365	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
24355	chr1	240608771	240608930	+	0	NA	intron (NM_022469, intron 1 of 1)	intron (NM_022469, intron 1 of 1)	3305	NM_022469	64388		NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC|STHAG9	gremlin 2, DAN family BMP antagonist	protein-coding
20681	chr1	200483371	200483790	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-73544	NM_001281293	23528		NM_012482	ENSG00000162702	ZNF281	GZP1|ZBP-99|ZBP99|ZNP-99	zinc finger protein 281	protein-coding
216571	chr8	21919111	21921080	+	0	NA	intron (NM_001362802, intron 1 of 26)	CpG	433	NM_001362802	23039		NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
133978	chr2	130755871	130756600	+	0	NA	promoter-TSS (NM_001105195)	promoter-TSS (NM_001105195)	-56	NM_001105194	205147		NM_152698	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
145154	chr20	38837521	38837930	+	0	NA	intron (NM_001172735, intron 2 of 9)	AluSx1|SINE|Alu	32028	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
106070	chr18	9112551	9112950	+	0	NA	intron (NM_021074, intron 1 of 7)	AluSz|SINE|Alu	10051	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
13387	chr1	113938001	113938200	+	0	NA	intron (NM_001369806, intron 1 of 15)	AluJb|SINE|Alu	8256	NM_001369807	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
121537	chr19	47237851	47238300	+	0	NA	Intergenic	AluJb|SINE|Alu	-5408	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
236523	chrX	72101981	72102600	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	29625	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
58534	chr12	132231401	132231600	+	0	NA	intron (NM_001122636, intron 6 of 10)	CpG	-25472	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
104931	chr17	81924801	81925230	+	0	NA	intron (NM_002359, intron 1 of 2)	intron (NM_002359, intron 1 of 2)	-1549	NM_032711	4097		NM_002359	ENSG00000197063	MAFG	hMAF	MAF bZIP transcription factor G	protein-coding
143291	chr20	25290701	25291330	+	0	NA	intron (NM_002862, intron 16 of 19)	intron (NM_002862, intron 16 of 19)	42930	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
27124	chr10	27998401	27999080	+	0	NA	intron (NM_018076, intron 1 of 19)	CpG	157	NM_001290020	55130		NM_018076	ENSG00000169126	ODAD2	ARMC4|CILD23|gudu	outer dynein arm docking complex subunit 2	protein-coding
66338	chr14	61437201	61438400	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	116357	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
73905	chr15	50688401	50688600	+	0	NA	Intergenic	AluSq10|SINE|Alu	-1703	NM_017672	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
125238	chr2	10386101	10386430	+	0	NA	intron (NM_001258359, intron 1 of 4)	intron (NM_001258359, intron 1 of 4)	17501	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
15236	chr1	149587071	149587330	+	0	NA	Intergenic	AluJr|SINE|Alu	3377	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
227505	chr9	91256171	91256530	+	0	NA	intron (NM_001351432, intron 7 of 10)	intron (NM_001351432, intron 7 of 10)	105568	NM_001698	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
114302	chr19	11812171	11812700	+	0	NA	Intergenic	MER21B|LTR|ERVL	-1838	NM_152357	126070		NM_152357	ENSG00000171295	ZNF440	-	zinc finger protein 440	protein-coding
201426	chr6	147109651	147110550	+	0	NA	intron (NR_034115, intron 4 of 10)	L1MC5|LINE|L1	-48825	NR_132442	106182249		NR_132442	ENSG00000196634	LUADT1	-	lung adenocarcinoma associated transcript 1	ncRNA
54564	chr12	92297601	92298380	+	0	NA	Intergenic	Intergenic	-123541	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
195593	chr6	37553571	37554150	+	0	NA	Intergenic	L1ME3A|LINE|L1	1562	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
179463	chr4	184454751	184455280	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	19535	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
81717	chr16	11259951	11261250	+	0	NA	Intergenic	Intergenic	-4418	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
59501	chr13	26760271	26760950	+	0	NA	5' UTR (NM_005288, exon 1 of 2)	5' UTR (NM_005288, exon 1 of 2)	176	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
93313	chr17	18175371	18175780	+	0	NA	intron (NM_016239, intron 64 of 64)	AluSz|SINE|Alu	-8253	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
55622	chr12	107025671	107025830	+	0	NA	intron (NM_004075, intron 1 of 12)	intron (NM_004075, intron 1 of 12)	-38584	NM_025198	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
205643	chr7	22725701	22725900	+	0	NA	non-coding (NR_131935, exon 2 of 2)	non-coding (NR_131935, exon 2 of 2)	-1400	NM_001318095	3569		NM_000600	ENSG00000136244	IL6	BSF-2|BSF2|CDF|HGF|HSF|IFN-beta-2|IFNB2|IL-6	interleukin 6	protein-coding
14823	chr1	146303001	146303350	+	0	NA	Intergenic	Intergenic	5184	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
176591	chr4	98926571	98926930	+	0	NA	intron (NM_001331017, intron 1 of 7)	intron (NM_001331017, intron 1 of 7)	2383	NM_001130678	1977		NM_001968	ENSG00000151247	EIF4E	AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
198867	chr6	109444801	109445000	+	0	NA	TTS (NM_003080)	TTS (NM_003080)	-3729	NM_001111298	285755		NM_173672	ENSG00000185250	PPIL6	PPIase|RSPH12|bA425D10.6|dJ919F19.1	peptidylprolyl isomerase like 6	protein-coding
149828	chr21	35025301	35025780	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	13886	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
14992	chr1	148078021	148078280	+	0	NA	intron (NR_146087, intron 1 of 7)	intron (NR_146087, intron 1 of 7)	28848	NR_146087	728920		NR_146087		PDE4DIPP1	PDE4DIP1	PDE4DIP pseudogene 1	pseudo
230985	chr9	129487071	129487350	+	0	NA	Intergenic	Intergenic	-1450	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
103494	chr17	78383301	78383500	+	0	NA	intron (NR_111989, intron 1 of 8)	AluSp|SINE|Alu	4751	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
113210	chr19	8454851	8454950	+	0	NA	intron (NM_031203, intron 1 of 16)	intron (NM_031203, intron 1 of 16)	9925	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
153290	chr22	24167371	24167530	+	0	NA	intron (NM_012295, intron 32 of 36)	intron (NM_012295, intron 32 of 36)	-14037	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
176417	chr4	89245471	89245830	+	0	NA	3' UTR (NM_198281, exon 2 of 2)	3' UTR (NM_198281, exon 2 of 2)	62150	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
173479	chr4	9144171	9144350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-28913	NM_001358418	100287045		NM_001358418	ENSG00000229924	FAM90A26	FAM90A26P	family with sequence similarity 90 member A26	protein-coding
161860	chr3	45844651	45844950	+	0	NA	intron (NM_001276378, intron 3 of 11)	intron (NM_001276378, intron 3 of 11)	-2681	NM_020347	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
5274	chr1	25064151	25065200	+	0	NA	Intergenic	Intergenic	41172	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
234328	chrX	14032101	14032950	+	0	NA	Intergenic	Intergenic	-2633	NM_001042479	54960		NM_017856	ENSG00000046647	GEMIN8	FAM51A1	gem nuclear organelle associated protein 8	protein-coding
58255	chr12	128810071	128810850	+	0	NA	intron (NM_145648, intron 2 of 7)	intron (NM_145648, intron 2 of 7)	13498	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
120265	chr19	42596301	42596850	+	0	NA	intron (NR_073180, intron 2 of 2)	intron (NR_073180, intron 2 of 2)	-1651	NM_001816	1088		NM_001816	ENSG00000124469	CEACAM8	CD66b|CD67|CGM6|NCA-95	CEA cell adhesion molecule 8	protein-coding
65041	chr14	39184301	39184500	+	0	NA	Intergenic	AluSx3|SINE|Alu	9146	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
61049	chr13	48243501	48244480	+	0	NA	intron (NM_021999, intron 1 of 5)	intron (NM_021999, intron 1 of 5)	10784	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
79848	chr16	1453201	1453400	+	0	NA	intron (NM_001114331, intron 13 of 23)	AluSp|SINE|Alu	-8811	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
40656	chr11	64738721	64740230	+	0	NA	exon (NM_001318398, exon 8 of 17)	exon (NM_001318398, exon 8 of 17)	4667	NM_001098671	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
167364	chr3	128779821	128780080	+	0	NA	intron (NM_004637, intron 1 of 5)	LTR26D|LTR|ERV1	53767	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
14781	chr1	146054571	146054730	+	0	NA	intron (NR_125968, intron 1 of 2)	LOR1b|LTR|ERV1	2054	NR_125967	101928979		NR_125967		LINC01719	-	long intergenic non-protein coding RNA 1719	ncRNA
224639	chr9	20616021	20616280	+	0	NA	intron (NM_001286691, intron 2 of 10)	MIRb|SINE|MIR	5788	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
232548	chr9	136347521	136348430	+	0	NA	intron (NM_001145638, intron 9 of 13)	intron (NM_001145638, intron 9 of 13)	-5082	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
67361	chr14	69717871	69718400	+	0	NA	Intergenic	Intergenic	-49007	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
147918	chr20	62906471	62906730	+	0	NA	intron (NM_001193369, intron 5 of 15)	intron (NM_001193369, intron 5 of 15)	19905	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
10092	chr1	58902671	58902830	+	0	NA	Intergenic	AluSz6|SINE|Alu	117599	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
32683	chr10	103921721	103922130	+	0	NA	Intergenic	L2a|LINE|L2	-3741	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
164205	chr3	56879501	56879700	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	36836	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
100828	chr17	64106251	64107550	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	23244	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
79141	chr16	236501	236850	+	0	NA	intron (NM_001284497, intron 1 of 12)	AluYe6|SINE|Alu	1854	NM_001284497	83986		NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding
144124	chr20	33999571	34000450	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-5643	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
150679	chr21	43604871	43605230	+	0	NA	intron (NM_007031, intron 7 of 8)	(AC)n|Simple_repeat|Simple_repeat	4939	NR_106718	102464825		NR_106718	ENSG00000278433	MIR6070	hsa-mir-6070	microRNA 6070	ncRNA
35964	chr11	2813501	2813700	+	0	NA	intron (NM_181798, intron 15 of 15)	intron (NM_181798, intron 15 of 15)	47969	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
48213	chr12	8099621	8099880	+	0	NA	Intergenic	AluY|SINE|Alu	17476	NM_015509	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
205744	chr7	23502651	23502750	+	0	NA	Intergenic	AluJb|SINE|Alu	12312	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
113037	chr19	7952951	7953250	+	0	NA	Intergenic	Intergenic	-9434	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
214903	chr7	151443751	151444050	+	0	NA	Intergenic	AluSz|SINE|Alu	-3087	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
42555	chr11	71792551	71793050	+	0	NA	Intergenic	Intergenic	21059	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
156128	chr22	40108971	40109130	+	0	NA	intron (NM_001024843, intron 1 of 23)	L1PA10|LINE|L1	64233	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
76511	chr15	74988021	74988300	+	0	NA	Intergenic	Intergenic	-7403	NR_033660	192683		NM_138967	ENSG00000198794	SCAMP5	-	secretory carrier membrane protein 5	protein-coding
122269	chr19	49059671	49060430	+	0	NA	Intergenic	AluSz|SINE|Alu	-2301	NM_001385261	94027		NM_033142	ENSG00000196337	CGB7	CG-beta-a|CGB6	chorionic gonadotropin subunit beta 7	protein-coding
24133	chr1	235831171	235831400	+	0	NA	intron (NM_001301365, intron 2 of 52)	MLT1M|LTR|ERVL-MaLR	21775	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
86446	chr16	66923621	66924180	+	0	NA	exon (NM_001128850, exon 3 of 5)	exon (NM_001128850, exon 3 of 5)	1635	NM_004165	6236		NM_004165	ENSG00000166592	RRAD	RAD|RAD1|REM3	RRAD, Ras related glycolysis inhibitor and calcium channel regulator	protein-coding
87243	chr16	69754451	69756030	+	0	NA	promoter-TSS (NM_014062)	promoter-TSS (NM_014062)	-272	NR_074074	28987		NM_014062	ENSG00000141101	NOB1	ART-4|MST158|MSTP158|NOB1P|PSMD8BP1	NIN1 (RPN12) binding protein 1 homolog	protein-coding
191635	chr6	13273721	13274430	+	0	NA	TTS (NR_134872)	TTS (NR_134872)	9367	NR_134859	100130357		NM_001242698	ENSG00000215022	LOC100130357	-	uncharacterized LOC100130357	ncRNA
138557	chr2	207627051	207627650	+	0	NA	Intergenic	Intergenic	-1297	NM_001330133	151194		NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase 21A, HSPA lysine	protein-coding
123357	chr19	53884501	53885230	+	0	NA	intron (NM_001316329, intron 3 of 18)	intron (NM_001316329, intron 3 of 18)	2668	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
208559	chr7	72626151	72626300	+	0	NA	intron (NM_001145440, intron 12 of 13)	intron (NM_001145440, intron 12 of 13)	-71678	NR_039793	100616310		NR_039793	ENSG00000266525	MIR4650-1	-	microRNA 4650-1	ncRNA
198438	chr6	106104671	106104830	+	0	NA	intron (NM_182907, intron 2 of 4)	X9_LINE|LINE|L1	5809	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
43039	chr11	74020851	74021030	+	0	NA	intron (NM_001286577, intron 32 of 32)	L2|LINE|L2	-11703	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
214653	chr7	150801671	150801830	+	0	NA	promoter-TSS (NM_014020)	promoter-TSS (NM_014020)	-390	NM_014020	28959		NM_014020	ENSG00000106565	TMEM176B	LR8|MS4B2	transmembrane protein 176B	protein-coding
144999	chr20	37524751	37525480	+	0	NA	promoter-TSS (NM_001167823)	promoter-TSS (NM_001167823)	-662	NM_001167823	10904		NM_006698	ENSG00000166619	BLCAP	BC10	BLCAP apoptosis inducing factor	protein-coding
213380	chr7	135962801	135963000	+	0	NA	intron (NM_001128619, intron 1 of 3)	intron (NM_001128619, intron 1 of 3)	14459	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
132082	chr2	101299571	101299730	+	0	NA	intron (NM_173647, intron 1 of 6)	intron (NM_173647, intron 1 of 6)	9051	NM_173647	284996		NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
52513	chr12	56050101	56050500	+	0	NA	Intergenic	AluSx3|SINE|Alu	8382	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
82040	chr16	12228521	12228780	+	0	NA	intron (NM_032167, intron 14 of 20)	L2|LINE|L2	251916	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
152675	chr22	21599151	21599450	+	0	NA	intron (NM_003347, intron 2 of 3)	intron (NM_003347, intron 2 of 3)	30722	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
17834	chr1	159908101	159908880	+	0	NA	Intergenic	Intergenic	-8325	NM_012337	25790		NM_012337	ENSG00000213085	CFAP45	CCDC19|HTX11|NESG1	cilia and flagella associated protein 45	protein-coding
34300	chr10	131978471	131978830	+	0	NA	intron (NM_004052, intron 1 of 5)	intron (NM_004052, intron 1 of 5)	3363	NM_004052	664		NM_004052	ENSG00000176171	BNIP3	HABON|NIP3	BCL2 interacting protein 3	protein-coding
227164	chr9	86659521	86659780	+	0	NA	Intergenic	Intergenic	287856	NM_002048	2619		NM_002048	ENSG00000180447	GAS1	-	growth arrest specific 1	protein-coding
55275	chr12	102950571	102950730	+	0	NA	intron (NM_001354304, intron 1 of 13)	CpG	-7024	NM_004316	429		NM_004316	ENSG00000139352	ASCL1	ASH1|HASH1|MASH1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding
225977	chr9	41229701	41230450	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3680	NR_039688	100616184		NR_039688	ENSG00000276029	MIR4477A	-	microRNA 4477a	ncRNA
17017	chr1	156050551	156050850	+	0	NA	intron (NM_001304342, intron 3 of 10)	intron (NM_001304342, intron 3 of 10)	3098	NM_001304342	56893		NM_020131	ENSG00000160803	UBQLN4	A1U|A1Up|C1orf6|CIP75|UBIN	ubiquilin 4	protein-coding
72528	chr15	34285001	34285230	+	0	NA	intron (NM_133647, intron 1 of 24)	L2a|LINE|L2	33705	NM_005135	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
94505	chr17	29387851	29388250	+	0	NA	Intergenic	MIR|SINE|MIR	-2313	NM_020791	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
216456	chr8	19575971	19576130	+	0	NA	intron (NM_001354495, intron 2 of 9)	intron (NM_001354495, intron 2 of 9)	26495	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
168706	chr3	150665971	150666330	+	0	NA	intron (NM_001308234, intron 13 of 13)	MIR|SINE|MIR	-37414	NR_121675	101928085		NR_121674	ENSG00000240137	ERICH6-AS1	-	ERICH6 antisense RNA 1	ncRNA
104512	chr17	81231901	81232100	+	0	NA	non-coding (NR_135654, exon 4 of 4)	non-coding (NR_135654, exon 4 of 4)	3293	NR_135654	105371925		NR_135654		LOC105371925	-	uncharacterized LOC105371925	ncRNA
81925	chr16	11755421	11755880	+	0	NA	intron (NM_014153, intron 21 of 22)	MIRc|SINE|MIR	-12793	NR_136671	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
99997	chr17	57811101	57811500	+	0	NA	Intergenic	Intergenic	38744	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
35328	chr11	1042971	1043330	+	0	NA	Intergenic	Intergenic	-6432	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
57189	chr12	121450871	121451230	+	0	NA	intron (NM_001005366, intron 13 of 22)	Tigger2b_Pri|DNA|TcMar-Tigger	-6698	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
235727	chrX	48918401	48919700	+	0	NA	promoter-TSS (NM_006875)	promoter-TSS (NM_006875)	-26	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
105729	chr18	2727901	2728100	+	0	NA	intron (NM_015295, intron 22 of 47)	intron (NM_015295, intron 22 of 47)	72274	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
33884	chr10	124455251	124455350	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5265	NM_001146340	390010		NM_001146340	ENSG00000229544	NKX1-2	C10orf121|NKX-1.1|bB238F13.2	NK1 homeobox 2	protein-coding
197060	chr6	53635601	53635800	+	0	NA	Intergenic	Intergenic	7320	NR_125841	101927171		NR_125841	ENSG00000235899	LINC01564	RAMS11|TCONS_00011314|XLOC_005327	long intergenic non-protein coding RNA 1564	ncRNA
77719	chr15	85698871	85699700	+	0	NA	intron (NM_007200, intron 17 of 36)	AluSq|SINE|Alu	59440	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
9941	chr1	54541821	54542750	+	0	NA	Intergenic	CpG	-5943	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
92481	chr17	8806451	8806550	+	0	NA	intron (NR_110865, intron 17 of 19)	intron (NR_110865, intron 17 of 19)	-7135	NM_152599	162387		NM_152599	ENSG00000185156	MFSD6L	-	major facilitator superfamily domain containing 6 like	protein-coding
213234	chr7	133699551	133699650	+	0	NA	intron (NM_021807, intron 10 of 17)	MER65A|LTR|ERV1	125288	NR_120513	101928861		NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
207182	chr7	43616771	43617350	+	0	NA	intron (NR_135582, intron 6 of 6)	L2b|LINE|L2	33952	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
210162	chr7	98283221	98283680	+	0	NA	intron (NM_001159491, intron 2 of 2)	intron (NM_001159491, intron 2 of 2)	1764	NM_015379	25798		NM_015379	ENSG00000164713	BRI3	I3	brain protein I3	protein-coding
3260	chr1	14968971	14969380	+	0	NA	intron (NM_201628, intron 2 of 14)	intron (NM_201628, intron 2 of 14)	23256	NM_001017999	23254		NM_015209	ENSG00000189337	KAZN	C1orf196|KAZ	kazrin, periplakin interacting protein	protein-coding
159986	chr3	18330751	18330850	+	0	NA	Intergenic	L1PA3|LINE|L1	94539	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
232989	chr9	136987801	136988200	+	0	NA	Intergenic	Intergenic	-4422	NR_138077	286257		NM_183241	ENSG00000148362	PAXX	C9orf142|XLS	PAXX non-homologous end joining factor	protein-coding
102987	chr17	76732861	76733960	+	0	NA	TTS (NM_003016)	TTS (NM_003016)	3138	NR_030366	693221		NR_030366	ENSG00000283805	MIR636	MIRN636|hsa-mir-636	microRNA 636	ncRNA
16164	chr1	153771921	153772500	+	0	NA	intron (NM_001324475, intron 27 of 30).2	intron (NM_001324475, intron 27 of 30).2	-3197	NR_145826	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
214754	chr7	151064471	151065030	+	0	NA	exon (NM_003040, exon 4 of 23)	exon (NM_003040, exon 4 of 23)	2108	NM_001199694	6522		NM_003040	ENSG00000164889	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3|OPTB9	solute carrier family 4 member 2	protein-coding
224701	chr9	21384901	21385400	+	0	NA	exon (NM_000605, exon 1 of 1)	exon (NM_000605, exon 1 of 1)	248	NM_000605	3440		NM_000605	ENSG00000188379	IFNA2	IFN-alpha-2|IFN-alphaA|IFNA|IFNA2B|leIF A	interferon alpha 2	protein-coding
48335	chr12	9135151	9135450	+	0	NA	Intergenic	Intergenic	-19071	NM_001347423	2		NM_000014	ENSG00000175899	A2M	A2MD|CPAMD5|FWP007|S863-7	alpha-2-macroglobulin	protein-coding
159578	chr3	15052721	15052980	+	0	NA	intron (NR_135247, intron 3 of 4)	intron (NR_135247, intron 3 of 4)	12465	NR_135247	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
8968	chr1	44572071	44572380	+	0	NA	intron (NM_001319957, intron 1 of 13)	intron (NM_001319957, intron 1 of 13)	26732	NR_049849	100847089		NR_049849	ENSG00000263381	MIR5584	-	microRNA 5584	ncRNA
109991	chr19	1417621	1418250	+	0	NA	intron (NM_170711, intron 2 of 12)	intron (NM_170711, intron 2 of 12)	10349	NM_018959	26528		NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding
145382	chr20	41196771	41196930	+	0	NA	intron (NM_001384324, intron 4 of 4)	intron (NM_001384324, intron 4 of 4)	27827	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
150646	chr21	43409101	43409930	+	0	NA	Intergenic	L1ME1|LINE|L1	17616	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
31827	chr10	99532621	99533280	+	0	NA	promoter-TSS (NM_145285)	promoter-TSS (NM_145285)	8	NM_145285	159296		NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
197119	chr6	57317401	57318080	+	0	NA	intron (NM_000947, intron 1 of 13)	intron (NM_000947, intron 1 of 13)	110	NM_000947	5558		NM_000947	ENSG00000146143	PRIM2	PRIM2A|p58	DNA primase subunit 2	protein-coding
220709	chr8	101889971	101890330	+	0	NA	intron (NM_001040626, intron 3 of 6)	L1ME3F|LINE|L1	-94282	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
185557	chr5	131369251	131369930	+	0	NA	intron (NM_001038702, intron 2 of 4)	L1ME3B|LINE|L1	105537	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
151543	chr21	46531971	46532380	+	0	NA	exon (NM_001146115, exon 9 of 20)	exon (NM_001146115, exon 9 of 20)	69704	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
51104	chr12	50050501	50051300	+	0	NA	Intergenic	Intergenic	-6696	NM_001095	41		NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding
123965	chr19	55409201	55409630	+	0	NA	Intergenic	AluSx|SINE|Alu	-1627	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
162080	chr3	46881621	46882480	+	0	NA	promoter-TSS (NM_001184744)	promoter-TSS (NM_001184744)	-199	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
90662	chr17	1689101	1689930	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-4648	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
194166	chr6	32096351	32096450	+	0	NA	exon (NM_001365276, exon 3 of 44).4	exon (NM_001365276, exon 3 of 44).4	12938	NM_019105	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
10322	chr1	64892701	64893380	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	73509	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
57387	chr12	121815301	121816130	+	0	NA	intron (NM_001353345, intron 7 of 16)	AluJb|SINE|Alu	11706	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
60080	chr13	34156971	34157230	+	0	NA	Intergenic	Intergenic	-190943	NR_146542	105370158		NR_146542	ENSG00000271850	LINC02343	-	long intergenic non-protein coding RNA 2343	ncRNA
101102	chr17	64984001	64984200	+	0	NA	Intergenic	HAL1|LINE|L1	-8515	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
173446	chr4	8244451	8245130	+	0	NA	Intergenic	Intergenic	-24964	NM_053044	94031		NM_053044	ENSG00000170801	HTRA3	Prsp|Tasp	HtrA serine peptidase 3	protein-coding
186248	chr5	134436571	134437930	+	0	NA	Intergenic	Intergenic	-2203	NR_105044	102546229		NR_105044		LINC02999	-	long intergenic non-protein coding RNA 2999	ncRNA
82611	chr16	18909521	18910250	+	0	NA	intron (NM_015092, intron 1 of 62)	intron (NM_015092, intron 1 of 62)	16523	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
147692	chr20	62318201	62319550	+	0	NA	exon (NM_005560, exon 52 of 80)	exon (NM_005560, exon 52 of 80)	13682	NR_039915	100616340		NR_039915	ENSG00000284074	MIR4758	-	microRNA 4758	ncRNA
18736	chr1	167475901	167476650	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	42254	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
230492	chr9	128244271	128244500	+	0	NA	TTS (NR_029619)	TTS (NR_029619)	445	NR_029619	406978		NR_029619	ENSG00000207581	MIR199B	MIRN199B|mir-199b	microRNA 199b	ncRNA
83282	chr16	24036471	24037280	+	0	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	-166241	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
162201	chr3	47009151	47010450	+	0	NA	TTS (NM_015175)	TTS (NM_015175)	-1742	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
191552	chr6	11675771	11675930	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	102953	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
45713	chr11	119086801	119087200	+	0	NA	promoter-TSS (NM_001024382)	promoter-TSS (NM_001024382)	-987	NM_001024382	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
140991	chr2	238060401	238062380	+	0	NA	intron (NM_016510, intron 1 of 11)	intron (NM_016510, intron 1 of 11)	389	NM_016510	51540		NM_016510	ENSG00000132330	SCLY	SCL|hSCL	selenocysteine lyase	protein-coding
123851	chr19	55245421	55246230	+	0	NA	promoter-TSS (NR_106861)	promoter-TSS (NR_106861)	-575	NR_106861	102466739		NR_106861	ENSG00000278264	MIR6803	hsa-mir-6803	microRNA 6803	ncRNA
113804	chr19	10575271	10576200	+	0	NA	intron (NM_001300887, intron 9 of 11)	intron (NM_001300887, intron 9 of 11)	-6756	NM_079421	1032		NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
142647	chr20	5775771	5776130	+	0	NA	intron (NM_001303477, intron 3 of 3)	AluSz|SINE|Alu	25549	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
38584	chr11	46215251	46215550	+	0	NA	Intergenic	MER66B|LTR|ERV1	43445	NR_120565	101928894		NR_120565	ENSG00000255314	LOC101928894	-	uncharacterized LOC101928894	ncRNA
20666	chr1	200301221	200301600	+	0	NA	Intergenic	Intergenic	72382	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
177005	chr4	105520871	105521050	+	0	NA	Intergenic	Intergenic	-31660	NM_017700	54848		NM_017700	ENSG00000236699	ARHGEF38	-	Rho guanine nucleotide exchange factor 38	protein-coding
192017	chr6	16419671	16420190	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	181343	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
71052	chr14	104798971	104799800	+	0	NA	Intergenic	Intergenic	-1169	NM_001370342	100128927		NM_001137601	ENSG00000179627	ZBTB42	LCCS6|ZNF925	zinc finger and BTB domain containing 42	protein-coding
93235	chr17	17852751	17853050	+	0	NA	intron (NM_001082968, intron 12 of 14)	intron (NM_001082968, intron 12 of 14)	-15889	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
55755	chr12	108517701	108518130	+	0	NA	intron (NM_007076, intron 2 of 2)	LTR33|LTR|ERVL	2638	NM_007076	11153		NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain protein adenylyltransferase	protein-coding
117053	chr19	18949321	18949880	+	0	NA	Intergenic	AluSc8|SINE|Alu	-8383	NM_004838	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
64980	chr14	37874601	37875000	+	0	NA	Intergenic	Intergenic	27324	NR_135286	400208		NR_135286	ENSG00000259091	LINC00517	C14orf26	long intergenic non-protein coding RNA 517	ncRNA
226091	chr9	62814101	62814300	+	0	NA	TTS (NR_121647)	TTS (NR_121647)	12735	NR_121647	103352539		NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA
110910	chr19	2767451	2767750	+	0	NA	exon (NM_003021, exon 3 of 12)	exon (NM_003021, exon 3 of 12)	15673	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
154358	chr22	32986151	32986250	+	0	NA	intron (NM_133633, intron 1 of 11)	MER91B|DNA|hAT-Tip100	20621	NM_133633	8224		NM_003490	ENSG00000185666	SYN3	-	synapsin III	protein-coding
47996	chr12	6917471	6917630	+	0	NA	intron (NM_001975, intron 5 of 11)	OldhAT1|DNA|hAT-Ac	2970	NM_001975	2026		NM_001975	ENSG00000111674	ENO2	HEL-S-279|NSE	enolase 2	protein-coding
150990	chr21	44349071	44349430	+	0	NA	Intergenic	Intergenic	-4351	NM_001320351	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
71544	chr14	106228301	106229100	+	0	NA	Intergenic	L1M4b|LINE|L1	-58974	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
127333	chr2	39101071	39101430	+	0	NA	intron (NM_001382394, intron 1 of 22)	MSTB|LTR|ERVL-MaLR	19801	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
233285	chr9	137312621	137313900	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-10989	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
210078	chr7	96708321	96708630	+	0	NA	intron (NR_163953, intron 1 of 5)	intron (NR_163953, intron 1 of 5)	1371	NR_163952	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
59429	chr13	25468671	25468930	+	0	NA	promoter-TSS (NM_001313741)	promoter-TSS (NM_001313741)	26	NM_001313741	51761		NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
89069	chr16	88459671	88459830	+	0	NA	intron (NM_153813, intron 1 of 9)	(CCCCCT)n|Simple_repeat|Simple_repeat	6470	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
209141	chr7	75104121	75104380	+	0	NA	intron (NM_001368302, intron 1 of 15)	AluSx1|SINE|Alu	10218	NM_001368302	389524		NM_001003795	ENSG00000174428	GTF2IRD2B	GTF2IRD2|GTF2IRD2A	GTF2I repeat domain containing 2B	protein-coding
86628	chr16	67432551	67433150	+	0	NA	intron (NM_000196, intron 1 of 4)	intron (NM_000196, intron 1 of 4)	1729	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
221813	chr8	128000701	128001700	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	-7698	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
22565	chr1	222652601	222652930	+	0	NA	intron (NM_001324062, intron 13 of 28)	intron (NM_001324062, intron 13 of 28)	8462	NM_001300867	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
89603	chr16	89293101	89294030	+	0	NA	intron (NR_045839, intron 5 of 9)	intron (NR_045839, intron 5 of 9)	-2563	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
187675	chr5	143220621	143221130	+	0	NA	intron (NR_146198, intron 22 of 22)	intron (NR_146198, intron 22 of 22)	28375	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
103006	chr17	76839451	76840800	+	0	NA	Intergenic	L2b|LINE|L2	-16041	NR_135283	283994		NR_135283	ENSG00000267535	LINC00868	C17orf52	long intergenic non-protein coding RNA 868	ncRNA
24880	chr10	939221	939680	+	0	NA	intron (NR_120629, intron 1 of 2)	intron (NR_120629, intron 1 of 2)	6424	NR_120629	101927762		NR_120629	ENSG00000229869	LARP4B-DT	-	LARP4B divergent transcript	ncRNA
58775	chr12	132718321	132719250	+	0	NA	exon (NM_138575, exon 6 of 6)	exon (NM_138575, exon 6 of 6)	7943	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
146354	chr20	49255601	49256000	+	0	NA	intron (NM_021035, intron 9 of 13)	intron (NM_021035, intron 9 of 13)	22257	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
199894	chr6	127853971	127854730	+	0	NA	intron (NM_001318531, intron 1 of 6).2	MER58A|DNA|hAT-Charlie	838	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
220631	chr8	100941471	100941880	+	0	NA	intron (NM_001135702, intron 2 of 5)	AluSx1|SINE|Alu	8896	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
154671	chr22	36358671	36358830	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	29217	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
58614	chr12	132488551	132491030	+	0	NA	promoter-TSS (NM_001142641)	promoter-TSS (NM_001142641)	-361	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
35098	chr11	635401	635800	+	0	NA	Intergenic	Intergenic	-1669	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
1014	chr1	1858271	1859350	+	0	NA	intron (NM_001282538, intron 1 of 9)	MER119|DNA|hAT-Charlie	32277	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
22590	chr1	223134851	223135500	+	0	NA	intron (NM_003268, intron 3 of 5)	intron (NM_003268, intron 3 of 5)	8073	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
4554	chr1	22041651	22041950	+	0	NA	Intergenic	L2c|LINE|L2	-10909	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
144670	chr20	36258071	36258830	+	0	NA	Intergenic	Intergenic	21972	NM_001271874	25980		NM_015511	ENSG00000131043	AAR2	C20orf4|CGI-23	AAR2 splicing factor	protein-coding
181644	chr5	49666951	49667300	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	774163	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
29484	chr10	70574371	70574730	+	0	NA	Intergenic	AluSz|SINE|Alu	28191	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
225808	chr9	37593671	37593830	+	0	NA	Intergenic	AluSx|SINE|Alu	-1111	NM_001134484	401505		NM_001001790	ENSG00000175768	TOMM5	C9orf105|Tom5|bA613M10.3	translocase of outer mitochondrial membrane 5	protein-coding
192384	chr6	24718101	24718700	+	0	NA	intron (NM_030939, intron 1 of 4)	intron (NM_030939, intron 1 of 4)	754	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
127039	chr2	37194501	37194700	+	0	NA	intron (NM_001032377, intron 1 of 8)	intron (NM_001032377, intron 1 of 8)	1487	NM_001032377	391365		NM_001032377	ENSG00000138068	SULT6B1	ST6B1	sulfotransferase family 6B member 1	protein-coding
228883	chr9	112699251	112699550	+	0	NA	intron (NM_001329585, intron 2 of 5)	MER44A|DNA|TcMar-Tigger	18717	NR_138056	58493		NM_021218	ENSG00000148153	INIP	C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1	INTS3 and NABP interacting protein	protein-coding
236158	chrX	64018801	64019000	+	0	NA	Intergenic	L1HS|LINE|L1	186808	NM_152424	139285		NM_152424	ENSG00000184675	AMER1	FAM123B|OSCS|WTX	APC membrane recruitment protein 1	protein-coding
210934	chr7	101241651	101242330	+	0	NA	intron (NM_016068, intron 2 of 4)	AluJr|SINE|Alu	3091	NM_016068	51024		NM_016068	ENSG00000214253	FIS1	CGI-135|TTC11	fission, mitochondrial 1	protein-coding
117359	chr19	19551551	19551850	+	0	NA	Intergenic	Intergenic	13435	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
50598	chr12	48658971	48659530	+	0	NA	intron (NM_017822, intron 8 of 9)	AluSz6|SINE|Alu	-2468	NR_002950	677793		NR_002950	ENSG00000206612	SNORA2A	ACA2A	small nucleolar RNA, H/ACA box 2A	snoRNA
237748	chrX	129613721	129613980	+	0	NA	Intergenic	Intergenic	41106	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
171499	chr3	196614501	196614700	+	0	NA	Intergenic	AluSx1|SINE|Alu	17987	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
91165	chr17	3789121	3789580	+	0	NA	intron (NM_002208, intron 1 of 30)	L1MC5a|LINE|L1	11838	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
238473	chrX	153382001	153382500	+	0	NA	Intergenic	(GACAGA)n|Simple_repeat|Simple_repeat	18446	NM_001351294	649238		NM_001351293	ENSG00000214897	PNMA6E	-	PNMA family member 6E	protein-coding
121585	chr19	47299851	47300250	+	0	NA	Intergenic	Intergenic	-9811	NM_001736	728		NM_001736	ENSG00000197405	C5AR1	C5A|C5AR|C5R1|CD88	complement C5a receptor 1	protein-coding
151270	chr21	45436801	45437630	+	0	NA	intron (NM_001379500, intron 2 of 41)	intron (NM_001379500, intron 2 of 41)	-12145	NR_027498	378832		NM_199175	ENSG00000183535	COL18A1-AS1	C21orf123|NCRNA00175|PRED80	COL18A1 antisense RNA 1	ncRNA
510	chr1	1203571	1204030	+	0	NA	exon (NM_148901, exon 4 of 4)	exon (NM_148901, exon 4 of 4)	2792	NM_148902	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
101474	chr17	67476921	67477180	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-5465	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
65610	chr14	52264071	52264630	+	0	NA	Intergenic	Intergenic	-3348	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
170107	chr3	183161621	183161990	+	0	NA	intron (NM_014398, intron 1 of 5)	intron (NM_014398, intron 1 of 5)	929	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
222705	chr8	141303821	141304080	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	4338	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
194198	chr6	32153701	32155230	+	0	NA	promoter-TSS (NR_037169)	promoter-TSS (NR_037169)	-100	NR_037170	100507547		NR_037169	ENSG00000284954	LOC100507547	-	uncharacterized LOC100507547	ncRNA
218421	chr8	47644201	47644450	+	0	NA	intron (NR_148202, intron 11 of 20)	intron (NR_148202, intron 11 of 20)	-9763	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
23304	chr1	228071871	228072600	+	0	NA	Intergenic	Intergenic	4315	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
122137	chr19	48861221	48861480	+	0	NA	intron (NM_020904, intron 5 of 19)	intron (NM_020904, intron 5 of 19)	7267	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
91190	chr17	3888721	3889450	+	0	NA	intron (NM_172207, intron 1 of 15)	intron (NM_172207, intron 1 of 15)	1658	NM_172206	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
128515	chr2	60557001	60557600	+	0	NA	Intergenic	Intergenic	-3646	NM_022893	53335		NM_018014	ENSG00000119866	BCL11A	CTIP1|DILOS|EVI9|HBFQTL5|SMARCM1|ZNF856	BCL11 transcription factor A	protein-coding
133315	chr2	113885521	113885850	+	0	NA	intron (NR_110174, intron 1 of 4)	intron (NR_110174, intron 1 of 4)	-4249	NR_102318	10096		NM_005721	ENSG00000115091	ACTR3	ARP3	actin related protein 3	protein-coding
206840	chr7	37345021	37345700	+	0	NA	intron (NM_001206480, intron 1 of 21)	L2a|LINE|L2	8308	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
192230	chr6	18387151	18387900	+	0	NA	5' UTR (NM_182757, exon 1 of 8)	5' UTR (NM_182757, exon 1 of 8)	175	NM_182757	255488		NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding
189778	chr5	176660571	176661850	+	0	NA	Intergenic	Intergenic	13726	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
206375	chr7	30661821	30661900	+	0	NA	intron (NM_001202483, intron 7 of 12)	intron (NM_001202483, intron 7 of 12)	20596	NM_001883	1395		NM_001883	ENSG00000106113	CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
107445	chr18	46333421	46333680	+	0	NA	promoter-TSS (NM_001256758)	promoter-TSS (NM_001256758)	-468	NM_152470	494470		NM_152470	ENSG00000141622	ARK2C	ARKL2|RNF111L2|RNF165|lncAMPC	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C	protein-coding
96979	chr17	42264651	42264750	+	0	NA	intron (NM_012448, intron 1 of 18)	L1PA3|LINE|L1	11691	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
131862	chr2	98701821	98702630	+	0	NA	intron (NM_012214, intron 2 of 15)	L1M4a2|LINE|L1	28907	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
63016	chr13	112715201	112715500	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	25021	NM_015205	23250		NM_015205	ENSG00000068650	ATP11A	ATPIH|ATPIS|AUNA2|DFNA84|HLD24	ATPase phospholipid transporting 11A	protein-coding
36209	chr11	3476351	3476680	+	0	NA	intron (NR_169525, intron 1 of 1)	HERVE-int|LTR|ERV1	558	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
70445	chr14	102049421	102050330	+	0	NA	exon (NM_001376, exon 76 of 78)	exon (NM_001376, exon 76 of 78)	37169	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
141271	chr2	240019701	240019850	+	0	NA	intron (NM_004544, intron 3 of 9)	AluYa5|SINE|Alu	5567	NR_136158	4705		NM_004544	ENSG00000130414	NDUFA10	CI-42KD|CI-42k|MC1DN22	NADH:ubiquinone oxidoreductase subunit A10	protein-coding
198361	chr6	105401471	105401630	+	0	NA	intron (NM_002726, intron 1 of 14)	MIR3|SINE|MIR	1532	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
97548	chr17	44072151	44073150	+	0	NA	intron (NM_001384166, intron 2 of 6)	AluSx1|SINE|Alu	1739	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
227932	chr9	94332351	94332650	+	0	NA	promoter-TSS (NR_033937)	promoter-TSS (NR_033937)	24	NR_033937	100132077		NR_033937		LOC100132077	-	uncharacterized LOC100132077	ncRNA
155757	chr22	39215421	39216280	+	0	NA	Intergenic	Intergenic	25059	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
181743	chr5	50706671	50707130	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	39486	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
41424	chr11	66056871	66057030	+	0	NA	exon (NM_006842, exon 6 of 22)	exon (NM_006842, exon 6 of 22)	3806	NR_145738	109616986		NR_145738		SNORD13F	-	small nucleolar RNA, C/D box 13F	snoRNA
105538	chr17	83181401	83181950	+	0	NA	Intergenic	Intergenic	-45222	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
163956	chr3	52899171	52899330	+	0	NA	Intergenic	Intergenic	-1702	NM_001198974	100526772		NM_001198974	ENSG00000248592	STIMATE-MUSTN1	TMEM110-MUSTN1	STIMATE-MUSTN1 readthrough	protein-coding
207205	chr7	43642671	43643300	+	0	NA	intron (NR_146940, intron 3 of 6)	intron (NR_146940, intron 3 of 6)	59877	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
204364	chr7	2925921	2926180	+	0	NA	intron (NM_032415, intron 14 of 24)	intron (NM_032415, intron 14 of 24)	-81742	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
100472	chr17	61451521	61452500	+	0	NA	promoter-TSS (NM_001321120)	promoter-TSS (NM_001321120)	-412	NM_001321120	9496		NM_018488	ENSG00000121075	TBX4	ICPPS|PAPPAS|SPS	T-box transcription factor 4	protein-coding
156804	chr22	41921471	41922080	+	0	NA	TTS (NM_052945)	TTS (NM_052945)	1522	NR_039760	100616259		NR_039760	ENSG00000283829	MIR378I	-	microRNA 378i	ncRNA
154945	chr22	37237351	37237650	+	0	NA	intron (NM_002872, intron 2 of 6)	intron (NM_002872, intron 2 of 6)	6769	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
25835	chr10	11217401	11217600	+	0	NA	exon (NM_001326324, exon 4 of 15)	exon (NM_001326324, exon 4 of 15)	52470	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
75795	chr15	68828121	68828380	+	0	NA	Intergenic	AluSz|SINE|Alu	-7355	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
217813	chr8	34215371	34215530	+	0	NA	Intergenic	L1PA3|LINE|L1	-568471	NR_125746	103689844		NR_125746		LINC01288	TCONS_00014671	long intergenic non-protein coding RNA 1288	ncRNA
187941	chr5	149114701	149114930	+	0	NA	Intergenic	Intergenic	-26632	NM_001301018	22885		NM_014945	ENSG00000173210	ABLIM3	HMFN1661	actin binding LIM protein family member 3	protein-coding
132734	chr2	109320171	109320530	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-6725	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	ncRNA
149565	chr21	33229321	33231130	+	0	NA	intron (NM_001385055, intron 1 of 9)	CpG	287	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
184487	chr5	100844051	100845030	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-27975	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
229721	chr9	124860471	124860630	+	0	NA	intron (NM_007209, intron 2 of 3)	intron (NM_007209, intron 2 of 3)	1407	NM_007209	11224		NM_007209	ENSG00000136942	RPL35	DBA19|L35|uL29	ribosomal protein L35	protein-coding
163606	chr3	51989621	51989900	+	0	NA	TTS (NM_001198898)	TTS (NM_001198898)	6135	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
121359	chr19	46841571	46841730	+	0	NA	intron (NM_001301078, intron 2 of 4)	L2b|LINE|L2	8664	NM_001301076	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
51092	chr12	49969921	49970380	+	0	NA	Intergenic	Intergenic	-2797	NM_001652	363		NM_001652	ENSG00000086159	AQP6	AQP2L|KID	aquaporin 6	protein-coding
27748	chr10	35194651	35195200	+	0	NA	promoter-TSS (NM_001352445)	promoter-TSS (NM_001352445)	-202	NM_001267569	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
88701	chr16	85829571	85829930	+	0	NA	Intergenic	Intergenic	30055	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
32644	chr10	103745521	103746330	+	0	NA	promoter-TSS (NR_038940)	promoter-TSS (NR_038940)	-854	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
97306	chr17	43231171	43231980	+	0	NA	Intergenic	Intergenic	2402	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
75760	chr15	68403321	68403580	+	0	NA	intron (NM_001004439, intron 1 of 29)	MSTB|LTR|ERVL-MaLR	28713	NM_001004439	22801		NM_012211	ENSG00000137809	ITGA11	HsT18964	integrin subunit alpha 11	protein-coding
223011	chr8	143283451	143284050	+	0	NA	Intergenic	CpG	-2050	NR_120682	100507316		NR_120682	ENSG00000253716	MINCR	LINC01604	MYC-induced long non-coding RNA	ncRNA
130864	chr2	87402871	87403030	+	0	NA	Intergenic	AluSx3|SINE|Alu	-52477	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
111039	chr19	3093901	3094460	+	0	NA	promoter-TSS (NM_002067)	promoter-TSS (NM_002067)	-182	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
36925	chr11	10808201	10810080	+	0	NA	promoter-TSS (NR_120540)	promoter-TSS (NR_120540)	-105	NM_001042559	1982		NM_001418	ENSG00000110321	EIF4G2	AAG1|DAP5|NAT1|P97	eukaryotic translation initiation factor 4 gamma 2	protein-coding
132633	chr2	108629001	108629780	+	0	NA	intron (NM_001371500, intron 1 of 2)	intron (NM_001371500, intron 1 of 2)	8139	NM_001371500	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
69919	chr14	99518251	99519150	+	0	NA	intron (NM_001144995, intron 3 of 5)	(GGCCCCT)n|Simple_repeat|Simple_repeat	37291	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
93058	chr17	17476351	17477580	+	0	NA	promoter-TSS (NM_018019)	promoter-TSS (NM_018019)	-35	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
149472	chr21	31784071	31784230	+	0	NA	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	-52032	NM_001145444	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
30269	chr10	75145371	75146180	+	0	NA	intron (NM_144660, intron 1 of 4)	MER20|DNA|hAT-Charlie	34119	NM_144660	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
92765	chr17	15552971	15553330	+	0	NA	intron (NR_037924, intron 2 of 5)	MER20|DNA|hAT-Charlie	10333	NM_001204478	100533496		NM_001204478	ENSG00000259024	TVP23C-CDRT4	FAM18B2|FAM18B2-CDRT4|TVP23C	TVP23C-CDRT4 readthrough	protein-coding
42626	chr11	72234501	72234700	+	0	NA	exon (NM_001567, exon 21 of 28)	exon (NM_001567, exon 21 of 28)	9576	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
218233	chr8	42048521	42048780	+	0	NA	exon (NM_006766, exon 2 of 17)	exon (NM_006766, exon 2 of 17)	-3100	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
224382	chr9	8429701	8430100	+	0	NA	intron (NM_130391, intron 21 of 31)	intron (NM_130391, intron 21 of 31)	304046	NM_130393	5789		NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|R-PTP-delta|RPTPDELTA	protein tyrosine phosphatase receptor type D	protein-coding
117585	chr19	21586201	21587230	+	0	NA	Intergenic	CpG	-62953	NR_144514	400682		NR_144514		LOC400682	-	zinc finger protein 100-like	pseudo
78486	chr15	92914571	92915420	+	0	NA	intron (NM_001042572, intron 2 of 12)	LTR54B|LTR|ERV1	10596	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
219923	chr8	86366301	86366700	+	0	NA	intron (NM_007013, intron 1 of 24)	intron (NM_007013, intron 1 of 24)	23953	NM_007013	11059		NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
100565	chr17	62718201	62718600	+	0	NA	intron (NM_001288779, intron 9 of 11)	intron (NM_001288779, intron 9 of 11)	12194	NR_147886	105371855		NR_147886	ENSG00000265702	LOC105371855	-	uncharacterized LOC105371855	ncRNA
180642	chr5	17216271	17216430	+	0	NA	promoter-TSS (NM_001271606)	promoter-TSS (NM_001271606)	-473	NM_001271606	10409		NM_006317	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant membrane attached signal protein 1	protein-coding
85886	chr16	57055771	57055930	+	0	NA	intron (NM_001384959, intron 27 of 46)	intron (NM_001384959, intron 27 of 46)	-36733	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
49109	chr12	14766901	14768130	+	0	NA	Intergenic	AluSz6|SINE|Alu	3616	NM_175054	121504		NM_175054	ENSG00000197837	H4C16	H4-16|H4/p|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST4H4	H4 histone 16	protein-coding
211932	chr7	112463571	112463980	+	0	NA	intron (NR_120333, intron 7 of 11)	intron (NR_120333, intron 7 of 11)	11717	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
27971	chr10	42637171	42637330	+	0	NA	intron (NM_001305039, intron 1 of 5)	intron (NM_001305039, intron 1 of 5)	1320	NM_001305037	7582		NM_006955	ENSG00000196693	ZNF33B	KOX2|KOX31|ZNF11B	zinc finger protein 33B	protein-coding
68477	chr14	87990771	87991550	+	0	NA	intron (NM_001201402, intron 1 of 16)	MIR|SINE|MIR	2022	NM_000153	2581		NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
92790	chr17	15944601	15945680	+	0	NA	5' UTR (NM_000676, exon 1 of 2)	5' UTR (NM_000676, exon 1 of 2)	223	NM_000676	136		NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
31446	chr10	95841571	95842330	+	0	NA	intron (NM_001164182, intron 3 of 8)	intron (NM_001164182, intron 3 of 8)	-66025	NM_001349008	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
27302	chr10	30445721	30445980	+	0	NA	intron (NM_001320961, intron 2 of 7)	intron (NM_001320961, intron 2 of 7)	11204	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
214115	chr7	144178451	144178930	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-4280	NM_001278507	100142659		NM_001278507	ENSG00000289604	CTAGE8	CTAGE4	CTAGE family member 8	protein-coding
34471	chr10	132456821	132457150	+	0	NA	Intergenic	Intergenic	11796	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
82319	chr16	15689871	15690230	+	0	NA	intron (NM_017668, intron 5 of 8)	AluSz6|SINE|Alu	39805	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
164182	chr3	56800401	56801100	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	1199	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
231494	chr9	131391371	131392150	+	0	NA	intron (NM_001384822, intron 1 of 30)	AluSx1|SINE|Alu	-2326	NM_001384821	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
40525	chr11	64290851	64291150	+	0	NA	promoter-TSS (NM_001317090)	promoter-TSS (NM_001317090)	-302	NR_133660	50801		NM_016611	ENSG00000182450	KCNK4	FHEIG|K2p4.1|TRAAK|TRAAK1	potassium two pore domain channel subfamily K member 4	protein-coding
52704	chr12	56570001	56570680	+	0	NA	intron (NM_002898, intron 4 of 13)	intron (NM_002898, intron 4 of 13)	48520	NM_002898	5939		NM_002898	ENSG00000076067	RBMS2	SCR3	RNA binding motif single stranded interacting protein 2	protein-coding
61310	chr13	50309651	50310200	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	137907	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
67871	chr14	74256101	74256300	+	0	NA	intron (NM_182894, intron 3 of 4)	AluSx1|SINE|Alu	16751	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
190554	chr5	180797071	180798150	+	0	NA	intron (NR_157150, intron 1 of 1)	intron (NR_157150, intron 1 of 1)	5196	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
239308	chrY	16902251	16902350	+	0	NA	Intergenic	L1PA3|LINE|L1	-598658	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
108493	chr18	72672451	72672550	+	0	NA	Intergenic	Intergenic	-128158	NM_182511	147381		NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
228259	chr9	98010351	98010730	+	0	NA	intron (NM_006401, intron 4 of 6)	L2b|LINE|L2	27199	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
102569	chr17	75861101	75861800	+	0	NA	Intergenic	LTR50|LTR|ERVL	-5014	NM_001348170	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
232567	chr9	136365851	136366750	+	0	NA	intron (NM_052813, intron 10 of 12)	intron (NM_052813, intron 10 of 12)	-2556	NR_073565	728489		NM_001080849	ENSG00000213221	DNLZ	C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2	DNL-type zinc finger	protein-coding
33843	chr10	124225401	124226400	+	0	NA	Intergenic	Intergenic	-132302	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
65457	chr14	51748701	51749100	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	31617	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
136395	chr2	176132321	176132900	+	0	NA	TTS (NM_001199747)	TTS (NM_001199747)	2905	NM_001199747	3234		NM_019558	ENSG00000175879	HOXD8	HOX4|HOX4E|HOX5.4	homeobox D8	protein-coding
67178	chr14	68817571	68818380	+	0	NA	Intergenic	Intergenic	-21732	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
47581	chr12	4579771	4579930	+	0	NA	intron (NM_001371301, intron 2 of 14)	intron (NM_001371301, intron 2 of 14)	-10222	NM_003845	8798		NM_003845	ENSG00000010219	DYRK4	-	dual specificity tyrosine phosphorylation regulated kinase 4	protein-coding
18532	chr1	162035451	162035550	+	0	NA	Intergenic	Intergenic	-11035	NM_015441	25903		NM_015441	ENSG00000162745	OLFML2B	-	olfactomedin like 2B	protein-coding
114781	chr19	13764151	13765550	+	0	NA	intron (NR_138051, intron 1 of 6)	CpG	328	NM_001031727	84245		NM_032285	ENSG00000037757	MRI1	M1Pi|MRDI|MTNA|Ypr118w	methylthioribose-1-phosphate isomerase 1	protein-coding
133426	chr2	119011551	119011650	+	0	NA	Intergenic	CpG	69406	NM_006770	8685		NM_006770	ENSG00000019169	MARCO	SCARA2|SR-A6	macrophage receptor with collagenous structure	protein-coding
122028	chr19	48623801	48625730	+	0	NA	promoter-TSS (NM_001204160)	promoter-TSS (NM_001204160)	-264	NM_001204160	56848		NM_020126	ENSG00000063176	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding
29819	chr10	72311721	72312180	+	0	NA	Intergenic	Intergenic	38026	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
149104	chr21	17387021	17387300	+	0	NA	Intergenic	Intergenic	-51730	NR_037586	100505929		NM_001005521		LINC01549	C21orf37	long intergenic non-protein coding RNA 1549	ncRNA
202186	chr6	156166101	156166300	+	0	NA	Intergenic	MIRc|SINE|MIR	-212550	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
169225	chr3	157129301	157129800	+	0	NA	Intergenic	Intergenic	-6548	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
234263	chrX	13177901	13178150	+	0	NA	Intergenic	Intergenic	125427	NR_146309	109729169		NR_146309	ENSG00000235385	LINC02154	MALR	long intergenic non-protein coding RNA 2154	ncRNA
102680	chr17	76107421	76107950	+	0	NA	Intergenic	L1MC|LINE|L1	-3898	NM_001375976	23265		NM_015219	ENSG00000182473	EXOC7	2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|NEDSEBA|YJL085W	exocyst complex component 7	protein-coding
168935	chr3	152362871	152363030	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-21960	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
186139	chr5	134159351	134160850	+	0	NA	intron (NM_170679, intron 4 of 5)	AluSq2|SINE|Alu	16850	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
7416	chr1	32955221	32955880	+	0	NA	intron (NM_001127361, intron 1 of 8)	AluJb|SINE|Alu	9259	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
15125	chr1	148678151	148679200	+	0	NA	intron (NM_001364007, intron 1 of 4)	intron (NM_001364007, intron 1 of 4)	1071	NM_001364007	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
97937	chr17	45170451	45171350	+	0	NA	TTS (NM_001303444)	TTS (NM_001303444)	585	NR_135646	105371795		NR_135646	ENSG00000267288	LOC105371795	-	uncharacterized LOC105371795	ncRNA
96602	chr17	40539301	40539830	+	0	NA	Intergenic	Intergenic	20829	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
79647	chr16	1189701	1190000	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	35418	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
70558	chr14	102568071	102568980	+	0	NA	Intergenic	MER21A|LTR|ERVL	23271	NR_146561	105370681		NR_146561	ENSG00000259230	LINC02323	-	long intergenic non-protein coding RNA 2323	ncRNA
232710	chr9	136570821	136571080	+	0	NA	Intergenic	Intergenic	23108	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
124212	chr19	56838771	56839600	+	0	NA	intron (NR_161476, intron 1 of 3)	intron (NR_161476, intron 1 of 3)	-1377	NM_001369733	5178		NM_006210	ENSG00000198300	PEG3	PW1|ZKSCAN22|ZNF904|ZSCAN24	paternally expressed 3	protein-coding
83966	chr16	29192201	29192450	+	0	NA	Intergenic	Intergenic	-109962	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
191756	chr6	13935601	13935800	+	0	NA	intron (NM_001165033, intron 1 of 1)	intron (NM_001165033, intron 1 of 1)	10507	NM_001165033	221687		NM_152737	ENSG00000180537	RNF182	-	ring finger protein 182	protein-coding
3521	chr1	16061751	16062150	+	0	NA	intron (NM_182623, intron 4 of 6)	intron (NM_182623, intron 4 of 6)	11701	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
97455	chr17	43677771	43678700	+	0	NA	Intergenic	MIRb|SINE|MIR	-16313	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
7542	chr1	34928621	34930200	+	0	NA	intron (NM_001080418, intron 1 of 11)	CpG	240	NM_001080418	58512		NM_001080418	ENSG00000116544	DLGAP3	DAP3|SAPAP3|SPAPA3	DLG associated protein 3	protein-coding
119322	chr19	39908251	39908350	+	0	NA	intron (NM_003890, intron 6 of 28)	L1MC5a|LINE|L1	26326	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
14465	chr1	144468671	144469250	+	0	NA	Intergenic	Intergenic	-7291	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
124983	chr2	9206351	9207050	+	0	NA	promoter-TSS (NM_003887)	promoter-TSS (NM_003887)	-65	NM_001135191	8853		NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
198848	chr6	109364621	109365280	+	0	NA	Intergenic	L1PA6|LINE|L1	16789	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
87284	chr16	70027621	70028180	+	0	NA	intron (NR_003610, intron 8 of 25)	AluJb|SINE|Alu	-2446	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
19894	chr1	183805001	183805580	+	0	NA	5' UTR (NM_001297671, exon 1 of 18)	5' UTR (NM_001297671, exon 1 of 18)	170	NM_001297671	23179		NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
111333	chr19	3636201	3636400	+	0	NA	TTS (NM_001300849)	TTS (NM_001300849)	-9485	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
100104	chr17	58325021	58325630	+	0	NA	promoter-TSS (NR_038410)	promoter-TSS (NR_038410)	-125	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
8882	chr1	43649651	43651200	+	0	NA	intron (NM_014663, intron 1 of 21)	CpG	276	NM_014663	9682		NM_014663	ENSG00000066135	KDM4A	JHDM3A|JMJD2|JMJD2A|TDRD14A	lysine demethylase 4A	protein-coding
65935	chr14	55373551	55375130	+	0	NA	intron (NM_014924, intron 9 of 9)	L1ME4b|LINE|L1	37490	NM_014924	22863		NM_014924	ENSG00000126775	ATG14	ATG14L|BARKOR|KIAA0831	autophagy related 14	protein-coding
171477	chr3	196501971	196503100	+	0	NA	intron (NM_152617, intron 1 of 5)	AluSz|SINE|Alu	1233	NM_152617	165918		NM_152617	ENSG00000163961	RNF168	RIDL|hRNF168	ring finger protein 168	protein-coding
189495	chr5	173229551	173229850	+	0	NA	Intergenic	Intergenic	5506	NM_001166176	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
14490	chr1	144544471	144544830	+	0	NA	Intergenic	Intergenic	7293	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
144808	chr20	36739751	36739850	+	0	NA	intron (NR_038370, intron 1 of 13)	AluYc|SINE|Alu	6290	NM_022477	57446		NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
123300	chr19	53563951	53564650	+	0	NA	intron (NM_001317117, intron 3 of 5)	AluSz|SINE|Alu	8993	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
138500	chr2	207154671	207154830	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	11198	NM_003709	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
36717	chr11	9015651	9016400	+	0	NA	Intergenic	L2a|LINE|L2	-12024	NM_020645	56675		NM_020645	ENSG00000175352	NRIP3	C11orf14|NY-SAR-105	nuclear receptor interacting protein 3	protein-coding
26606	chr10	22308401	22308600	+	0	NA	Intergenic	Intergenic	-7883	NM_001204062	100532731		NM_001204062	ENSG00000269897	COMMD3-BMI1	BMI1|PCGF4|RNF51	COMMD3-BMI1 readthrough	protein-coding
225670	chr9	36466071	36466430	+	0	NA	Intergenic	L1MB7|LINE|L1	-65052	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
46789	chr11	130118271	130118450	+	0	NA	intron (NM_001382546, intron 3 of 13)	intron (NM_001382546, intron 3 of 13)	-41422	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
94673	chr17	30376771	30377230	+	0	NA	Intergenic	Intergenic	-1927	NM_001304	1362		NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
137086	chr2	190925371	190925530	+	0	NA	intron (NM_014905, intron 11 of 17)	intron (NM_014905, intron 11 of 17)	44629	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
121053	chr19	45848971	45849130	+	0	NA	intron (NM_004819, intron 5 of 26)	intron (NM_004819, intron 5 of 26)	14097	NM_004819	8189		NM_004819	ENSG00000125755	SYMPK	Pta1|SPK|SYM	symplekin scaffold protein	protein-coding
125176	chr2	10074601	10074800	+	0	NA	intron (NM_001037160, intron 1 of 2)	intron (NM_001037160, intron 1 of 2)	5711	NM_001037160	192668		NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
78260	chr15	90835451	90835750	+	0	NA	Intergenic	AluSz|SINE|Alu	-32988	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
74431	chr15	59282901	59283000	+	0	NA	intron (NM_004998, intron 1 of 27)	G-rich|Low_complexity|Low_complexity	76107	NM_033195	92483		NM_033195	ENSG00000171989	LDHAL6B	LDH6B|LDHAL6|LDHL	lactate dehydrogenase A like 6B	protein-coding
173497	chr4	9368301	9368800	+	0	NA	non-coding (NR_027279, exon 1 of 1)	non-coding (NR_027279, exon 1 of 1)	676	NR_027279	391622		NM_212553	ENSG00000205946	USP17L6P	DUB4|USP17L6|vDUB4	ubiquitin specific peptidase 17 like family member 6, pseudogene	pseudo
38543	chr11	45910121	45910700	+	0	NA	intron (NM_004813, intron 10 of 10)	intron (NM_004813, intron 10 of 10)	-3139	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
49936	chr12	39713871	39714230	+	0	NA	intron (NR_135051, intron 11 of 18)	(TA)n|Simple_repeat|Simple_repeat	87867	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
223884	chr9	273701	274830	+	0	NA	intron (NM_001193536, intron 1 of 46)	intron (NM_001193536, intron 1 of 46)	1217	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
24705	chr1	247333321	247333580	+	0	NA	non-coding (NR_168398, exon 3 of 3)	non-coding (NR_168398, exon 3 of 3)	1396	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
85201	chr16	46976401	46976800	+	0	NA	Intergenic	Intergenic	-2926	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
81209	chr16	4502671	4502830	+	0	NA	5' UTR (NM_001286270, exon 3 of 8)	5' UTR (NM_001286270, exon 3 of 8)	6892	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
237510	chrX	120014621	120014980	+	0	NA	non-coding (NR_131250, exon 2 of 4)	non-coding (NR_131250, exon 2 of 4)	751	NR_131250	101928941		NR_131250	ENSG00000291200	RHOXF1P1	TCONS_00017086|lncRHOXF1	Rhox homeobox family member 1 pseudogene 1	pseudo
142940	chr20	18717171	18717330	+	0	NA	intron (NM_080820, intron 4 of 5)	Tigger2|DNA|TcMar-Tigger	-18542	NR_109955	101929526		NR_109955	ENSG00000233993	DTD1-AS1	-	DTD1 antisense RNA 1	ncRNA
2334	chr1	9200501	9201080	+	0	NA	Intergenic	Intergenic	-18452	NR_132742	106614088		NR_132742	ENSG00000228526	MIR34AHG	lnc34a	MIR34A host gene	ncRNA
225124	chr9	33498471	33498630	+	0	NA	Intergenic	Intergenic	12616	NR_003667	441394		NM_001007550		SUGT1P1	SGT1P|SUGT1P|bA255A11.1	SUGT1 pseudogene 1	pseudo
152941	chr22	22823271	22823500	+	0	NA	TTS (NR_030755)	TTS (NR_030755)	609	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
67669	chr14	73124501	73125100	+	0	NA	TTS (NM_021239)	TTS (NM_021239)	-11707	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
78295	chr15	90891271	90891930	+	0	NA	exon (NM_002005, exon 12 of 19)	exon (NM_002005, exon 12 of 19)	6554	NM_001143784	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
211164	chr7	102580321	102581050	+	0	NA	3' UTR (NM_006989, exon 21 of 21)	3' UTR (NM_006989, exon 21 of 21)	-8064	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
13832	chr1	117631351	117631930	+	0	NA	Intergenic	Intergenic	25592	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
12352	chr1	101228251	101228750	+	0	NA	Intergenic	HAL1|LINE|L1	8028	NR_104626	101928370		NR_104626		S1PR1-DT	LISPR1	S1PR1 divergent transcript	ncRNA
145639	chr20	44884771	44887030	+	0	NA	intron (NM_139323, intron 1 of 5)	CpG	195	NM_003404	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
234686	chrX	20352721	20353650	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-86276	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
226873	chr9	78121371	78121800	+	0	NA	Intergenic	Intergenic	-89774	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
71583	chr14	106504451	106504550	+	0	NA	Intergenic	Intergenic	22061	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
110617	chr19	2197971	2198750	+	0	NA	intron (NM_032482, intron 7 of 27)	intron (NM_032482, intron 7 of 27)	34427	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
134180	chr2	134290171	134291350	+	0	NA	intron (NM_001371457, intron 3 of 16)	intron (NM_001371457, intron 3 of 16)	36688	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
150697	chr21	43713271	43713630	+	0	NA	Intergenic	AluSx3|SINE|Alu	-5679	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
231006	chr9	129505751	129506250	+	0	NA	intron (NR_038955, intron 4 of 4)	AluJb|SINE|Alu	17340	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
107769	chr18	50967551	50968830	+	0	NA	intron (NM_018696, intron 1 of 3)	CpG	150	NM_018696	55520		NM_018696	ENSG00000141642	ELAC1	D29	elaC ribonuclease Z 1	protein-coding
22079	chr1	211380201	211380600	+	0	NA	Intergenic	L1ME3C|LINE|L1	-2355	NR_026761	84791		NM_032705	ENSG00000153363	LINC00467	ASAP|C1orf97	long intergenic non-protein coding RNA 467	ncRNA
237767	chrX	129758871	129759030	+	0	NA	intron (NM_003399, intron 14 of 20)	intron (NM_003399, intron 14 of 20)	19971	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
195020	chr6	35467601	35469830	+	0	NA	intron (NM_007104, intron 1 of 5)	CpG	314	NM_007104	4736		NM_007104	ENSG00000198755	RPL10A	CSA19|Csa-19|L10A|NEDD6|uL1	ribosomal protein L10a	protein-coding
146211	chr20	48787301	48787500	+	0	NA	intron (NM_020820, intron 1 of 39)	A-rich|Low_complexity|Low_complexity	40599	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
110789	chr19	2446221	2447100	+	0	NA	intron (NM_032737, intron 1 of 11)	L1MB7|LINE|L1	10299	NM_032737	84823		NM_032737	ENSG00000176619	LMNB2	EPM9|LAMB2|LMN2|MCPH27	lamin B2	protein-coding
37882	chr11	33988021	33988350	+	0	NA	Intergenic	Intergenic	-63546	NM_005898	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
160256	chr3	25613671	25614030	+	0	NA	intron (NM_001330700, intron 27 of 35)	MIRc|SINE|MIR	50522	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
203862	chr7	1463571	1464230	+	0	NA	Intergenic	Intergenic	-4430	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
168502	chr3	143751451	143752530	+	0	NA	intron (NM_173653, intron 4 of 15)	intron (NM_173653, intron 4 of 15)	96478	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
104716	chr17	81556671	81557250	+	0	NA	TTS (NM_017921)	TTS (NM_017921)	-4607	NM_025161	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
212111	chr7	116213651	116213950	+	0	NA	intron (NM_015641, intron 1 of 6)	intron (NM_015641, intron 1 of 6)	3261	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
10104	chr1	58969421	58969680	+	0	NA	Intergenic	L1PA10|LINE|L1	-50926	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
6708	chr1	29229871	29230030	+	0	NA	intron (NM_001349713, intron 1 of 11)	MIRb|SINE|MIR	984	NR_146214	51102		NM_016011	ENSG00000116353	MECR	CGI-63|DYTOABG|ETR1|FASN2B|NRBF1|OPA16	mitochondrial trans-2-enoyl-CoA reductase	protein-coding
236483	chrX	71639801	71640350	+	0	NA	Intergenic	L2|LINE|L2	-21564	NM_001504	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
201315	chr6	144364601	144365000	+	0	NA	intron (NM_007124, intron 1 of 73)	MLT1D|LTR|ERVL-MaLR	-40855	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
173511	chr4	9604021	9605350	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-48369	NR_031688	100302277		NR_031688	ENSG00000221275	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2	microRNA 548i-2	ncRNA
142696	chr20	8114301	8114530	+	0	NA	Intergenic	L1PA3|LINE|L1	-17851	NM_015192	23236		NM_015192	ENSG00000182621	PLCB1	DEE12|EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B	phospholipase C beta 1	protein-coding
8352	chr1	40240021	40240280	+	0	NA	exon (NM_012421, exon 8 of 8)	exon (NM_012421, exon 8 of 8)	-7787	NM_001008740	127391		NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
45504	chr11	118660701	118661200	+	0	NA	intron (NM_007180, intron 8 of 14)	intron (NM_007180, intron 8 of 14)	16950	NR_106773	102466719		NR_106773	ENSG00000284246	MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
51322	chr12	51326801	51327780	+	0	NA	Intergenic	Intergenic	-2622	NM_001290007	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
208385	chr7	66679071	66679880	+	0	NA	intron (NM_001367722, intron 1 of 7)	AluJb|SINE|Alu	-2691	NM_001367740	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
63193	chr13	113774401	113774630	+	0	NA	intron (NM_001348663, intron 3 of 7)	(CACACAC)n|Simple_repeat|Simple_repeat	15289	NM_182614	348013		NM_182614	ENSG00000184497	TMEM255B	FAM70B	transmembrane protein 255B	protein-coding
173836	chr4	20773451	20773630	+	0	NA	intron (NM_147181, intron 1 of 6)	intron (NM_147181, intron 1 of 6)	73082	NM_001130727	133015		NM_145048	ENSG00000163138	PACRGL	C4orf28	parkin coregulated like	protein-coding
233474	chr9	137756521	137756780	+	0	NA	intron (NM_024757, intron 8 of 26)	intron (NM_024757, intron 8 of 26)	31756	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
156210	chr22	40328951	40329780	+	0	NA	3' UTR (NM_001162501, exon 23 of 23)	3' UTR (NM_001162501, exon 23 of 23)	-17135	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
6647	chr1	28963771	28964130	+	0	NA	intron (NM_001376013, intron 1 of 20)	intron (NM_001376013, intron 1 of 20)	49374	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
116290	chr19	17751071	17752350	+	0	NA	intron (NM_001384394, intron 1 of 28)	intron (NM_001384394, intron 1 of 28)	233	NM_001384387	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
58038	chr12	124454831	124455880	+	0	NA	intron (NM_001077261, intron 8 of 47)	intron (NM_001077261, intron 8 of 47)	112257	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
106414	chr18	13505971	13506330	+	0	NA	intron (NM_001378099, intron 4 of 6)	Tigger6a|DNA|TcMar-Tigger	46203	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
185500	chr5	131316551	131316950	+	0	NA	intron (NM_001375633, intron 2 of 5)	intron (NM_001375633, intron 2 of 5)	52697	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
112785	chr19	7477151	7477700	+	0	NA	exon (NM_001300881, exon 5 of 5)	exon (NM_001300881, exon 5 of 5)	11610	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
189982	chr5	177452251	177452350	+	0	NA	intron (NM_001174102, intron 1 of 2)	intron (NM_001174102, intron 1 of 2)	3975	NM_001174102	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
125149	chr2	10011401	10011600	+	0	NA	Intergenic	CpG	31901	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
82117	chr16	14688851	14688950	+	0	NA	intron (NM_003561, intron 2 of 3).2	intron (NM_003561, intron 2 of 3).2	5408	NM_003561	8399		NM_003561	ENSG00000069764	PLA2G10	GXPLA2|GXSPLA2|SPLA2|sPLA2-X	phospholipase A2 group X	protein-coding
100	chr1	433951	434130	+	0	NA	Intergenic	L1PA8|LINE|L1	17638	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
189213	chr5	171439421	171439750	+	0	NA	intron (NM_003862, intron 3 of 4)	MIRc|SINE|MIR	19938	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
31628	chr10	97384951	97385300	+	0	NA	intron (NM_015179, intron 10 of 33)	intron (NM_015179, intron 10 of 33)	16215	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
155700	chr22	39087821	39088600	+	0	NA	TTS (NM_021822)	TTS (NM_021822)	-9014	NM_001166004	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
233102	chr9	137120051	137120350	+	0	NA	Intergenic	AluSc|SINE|Alu	-5467	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
49307	chr12	21458801	21459080	+	0	NA	intron (NM_001350913, intron 6 of 10)	Tigger1|DNA|TcMar-Tigger	21025	NM_001350912	79912		NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
211505	chr7	105266851	105267600	+	0	NA	intron (NM_001350741, intron 2 of 16)	intron (NM_001350741, intron 2 of 16)	1852	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
178961	chr4	159206421	159206680	+	0	NA	intron (NM_001351724, intron 3 of 30)	intron (NM_001351724, intron 3 of 30)	-21082	NM_001351726	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
23122	chr1	226692751	226692850	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-17732	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
125092	chr2	9708821	9709580	+	0	NA	Intergenic	Intergenic	-78203	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
206430	chr7	32727771	32728270	+	0	NA	promoter-TSS (NR_003502)	promoter-TSS (NR_003502)	70	NR_003502	441208		NM_001013723		ZNRF2P1	-	zinc and ring finger 2 pseudogene 1	pseudo
222936	chr8	143021471	143022250	+	0	NA	3' UTR (NM_002346, exon 4 of 4)	3' UTR (NM_002346, exon 4 of 4)	3331	NM_002346	4061		NM_002346	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	lymphocyte antigen 6 family member E	protein-coding
107835	chr18	54247021	54247480	+	0	NA	Intergenic	Intergenic	-22229	NR_147257	11201		NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
142668	chr20	5947251	5948150	+	0	NA	intron (NM_015939, intron 1 of 10)	intron (NM_015939, intron 1 of 10)	2833	NM_015939	51605		NM_015939	ENSG00000089195	TRMT6	CGI-09|GCD10|Gcd10p	tRNA methyltransferase 6 non-catalytic subunit	protein-coding
145701	chr20	45020071	45020230	+	0	NA	intron (NM_006282, intron 9 of 10)	MIR|SINE|MIR	53638	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
7150	chr1	32224051	32224500	+	0	NA	intron (NM_003757, intron 4 of 11)	intron (NM_003757, intron 4 of 11)	-1904	NR_133636	56063		NM_019118	ENSG00000160055	TMEM234	AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7	transmembrane protein 234	protein-coding
64482	chr14	24301901	24302100	+	0	NA	exon (NM_001286367, exon 4 of 10)	exon (NM_001286367, exon 4 of 10)	2150	NM_174913	161424		NM_174913	ENSG00000196943	NOP9	C14orf21|HP08474	NOP9 nucleolar protein	protein-coding
42448	chr11	69311521	69312380	+	0	NA	Intergenic	MIRb|SINE|MIR	17795	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
170150	chr3	183515971	183516730	+	0	NA	intron (NM_130446, intron 2 of 6)	intron (NM_130446, intron 2 of 6)	-32385	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
89575	chr16	89264801	89265150	+	0	NA	Intergenic	Intergenic	-31153	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
137534	chr2	197213771	197214450	+	0	NA	intron (NM_153697, intron 1 of 9)	L1ME4a|LINE|L1	16119	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
101285	chr17	66399071	66399890	+	0	NA	intron (NR_110822, intron 3 of 3)	L1MB2|LINE|L1	17374	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
104133	chr17	80369401	80370000	+	0	NA	intron (NM_001256071, intron 45 of 67)	intron (NM_001256071, intron 45 of 67)	-45467	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
156037	chr22	39968001	39968200	+	0	NA	exon (NM_001291826, exon 5 of 7)	exon (NM_001291826, exon 5 of 7)	21283	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
178855	chr4	154329371	154329530	+	0	NA	intron (NM_001142552, intron 6 of 7).2	intron (NM_001142552, intron 6 of 7).2	162349	NM_001142552	54798		NM_017639	ENSG00000197410	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
186267	chr5	134531421	134532480	+	0	NA	intron (NM_015288, intron 1 of 10)	AluJb|SINE|Alu	5842	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
113128	chr19	8316171	8316330	+	0	NA	intron (NM_005001, intron 3 of 3)	AluJb|SINE|Alu	5125	NM_005001	4701		NM_005001	ENSG00000267855	NDUFA7	B14.5a|CI-B14.5a	NADH:ubiquinone oxidoreductase subunit A7	protein-coding
73229	chr15	41662901	41663200	+	0	NA	intron (NM_001164273, intron 1 of 23)	intron (NM_001164273, intron 1 of 23)	2638	NM_001080541	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
172984	chr4	4145471	4145900	+	0	NA	Intergenic	Intergenic	81244	NM_177998	133060		NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
149	chr1	527821	528350	+	0	NA	Intergenic	AluSz|SINE|Alu	-32640	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
43487	chr11	78397421	78397780	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	20220	NM_080491	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
33419	chr10	118701621	118701880	+	0	NA	intron (NM_153810, intron 4 of 8)	intron (NM_153810, intron 4 of 8)	53220	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
93126	chr17	17721651	17721750	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	40242	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
77207	chr15	80984971	80985380	+	0	NA	intron (NR_126327, intron 1 of 4)	MIR|SINE|MIR	4644	NR_126327	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
5114	chr1	24872401	24873130	+	0	NA	Intergenic	UCON82|Unknown|Unknown	46651	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
67003	chr14	67411601	67412350	+	0	NA	intron (NM_016445, intron 1 of 8)	CpG	190	NM_016445	26499		NM_016445	ENSG00000100558	PLEK2	-	pleckstrin 2	protein-coding
29443	chr10	70402421	70402950	+	0	NA	Intergenic	Intergenic	-1460	NM_004096	1979		NM_004096	ENSG00000148730	EIF4EBP2	4EBP2|PHASII	eukaryotic translation initiation factor 4E binding protein 2	protein-coding
86827	chr16	67884801	67885630	+	0	NA	TTS (NM_014329)	TTS (NM_014329)	330	NM_198443	123904		NM_198443	ENSG00000188038	NRN1L	MRCC2446|UNQ2446|cpg15-2	neuritin 1 like	protein-coding
40899	chr11	65136571	65136730	+	0	NA	Intergenic	L2a|LINE|L2	-2131	NM_032431	84447		NM_032431	ENSG00000162298	SYVN1	DER3|HRD1	synoviolin 1	protein-coding
62200	chr13	98279671	98280080	+	0	NA	intron (NM_001286839, intron 2 of 27)	intron (NM_001286839, intron 2 of 27)	71351	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA
144977	chr20	37276551	37277050	+	0	NA	Intergenic	Intergenic	-12855	NM_001376532	63905		NM_022077	ENSG00000101363	MANBAL	-	mannosidase beta like	protein-coding
17140	chr1	156186301	156186700	+	0	NA	Intergenic	HERVK22-int|LTR|ERVK	-7604	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
108215	chr18	63159901	63162950	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	158344	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
115888	chr19	16579271	16579430	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-6935	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
225999	chr9	41348451	41348950	+	0	NA	Intergenic	Intergenic	-10162	NR_148348	107984035		NR_148348		LOC107984035	-	uncharacterized LOC107984035	ncRNA
11598	chr1	91591921	91592180	+	0	NA	Intergenic	Intergenic	90942	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
165324	chr3	88005021	88005450	+	0	NA	Intergenic	Intergenic	22659	NM_000866	3355		NM_000866	ENSG00000179097	HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	5-hydroxytryptamine receptor 1F	protein-coding
118803	chr19	38466451	38466750	+	0	NA	intron (NM_000540, intron 24 of 105)	AluY|SINE|Alu	32909	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
3871	chr1	16979171	16979330	+	0	NA	intron (NM_001135247, intron 1 of 8)	intron (NM_001135247, intron 1 of 8)	1370	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
237048	chrX	103253971	103255400	+	0	NA	intron (NM_153333, intron 1 of 2)	intron (NM_153333, intron 1 of 2)	470	NM_153333	90843		NM_153333	ENSG00000180964	TCEAL8	WEX3	transcription elongation factor A like 8	protein-coding
132850	chr2	110854401	110854950	+	0	NA	intron (NM_001371254, intron 10 of 18)	intron (NM_001371254, intron 10 of 18)	122102	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
52930	chr12	57280101	57281200	+	0	NA	intron (NM_001351209, intron 13 of 23)	intron (NM_001351209, intron 13 of 23)	-29463	NM_001286257	246329		NM_145064	ENSG00000185482	STAC3	CMYP13|MYPBB|NAM	SH3 and cysteine rich domain 3	protein-coding
66444	chr14	61538971	61539130	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	31144	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
20938	chr1	202213121	202213700	+	0	NA	promoter-TSS (NM_001017404)	promoter-TSS (NM_001017404)	-745	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
183396	chr5	77775151	77777030	+	0	NA	intron (NM_001297738, intron 1 of 2)	CpG	249	NM_004607	6902		NM_004607	ENSG00000171530	TBCA	-	tubulin folding cofactor A	protein-coding
174501	chr4	39958251	39958600	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluSq|SINE|Alu	19486	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
127739	chr2	43570901	43571100	+	0	NA	intron (NR_144316, intron 13 of 36)	AluJr|SINE|Alu	24974	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
13549	chr1	115114321	115114580	+	0	NA	Intergenic	Intergenic	-24947	NM_005725	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
61150	chr13	48769121	48769530	+	0	NA	Intergenic	Intergenic	115396	NM_001308476	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
223832	chr8	144997621	144998030	+	0	NA	non-coding (NR_002807, exon 1 of 1)	non-coding (NR_002807, exon 1 of 1)	2960	NR_002807	286102		NR_002807		TMED10P1	S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1	transmembrane p24 trafficking protein 10 pseudogene 1	pseudo
186425	chr5	135887421	135887980	+	0	NA	intron (NM_001349335, intron 10 of 10)	intron (NM_001349335, intron 10 of 10)	8141	NM_000590	3578		NM_000590	ENSG00000145839	IL9	HP40|IL-9|P40	interleukin 9	protein-coding
205450	chr7	17140501	17140900	+	0	NA	Intergenic	Intergenic	-157952	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
47852	chr12	6622621	6623030	+	0	NA	intron (NM_020400, intron 1 of 1)	AluJb|SINE|Alu	8824	NM_001142961	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
7263	chr1	32361321	32362780	+	0	NA	promoter-TSS (NM_052841)	promoter-TSS (NM_052841)	193	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
58705	chr12	132564021	132564600	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-17687	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
103706	chr17	78823501	78824530	+	0	NA	intron (NR_169583, intron 6 of 22)	L1MC4|LINE|L1	16799	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
20289	chr1	197135771	197135930	+	0	NA	intron (NM_018136, intron 4 of 27)	AluSz6|SINE|Alu	10819	NM_018136	259266		NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	assembly factor for spindle microtubules	protein-coding
202998	chr6	162995251	162995550	+	0	NA	intron (NM_001080378, intron 3 of 5)	L1PA2|LINE|L1	58761	NR_110872	101929239		NR_110871	ENSG00000225437	PACRG-AS2	-	PACRG antisense RNA 2	ncRNA
156312	chr22	40605351	40605450	+	0	NA	intron (NM_001282661, intron 1 of 13)	L2c|LINE|L2	31319	NM_020831	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
116392	chr19	17955101	17955300	+	0	NA	intron (NM_002248, intron 2 of 10)	FRAM|SINE|Alu	3898	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
89673	chr16	89374501	89374800	+	0	NA	intron (NR_045839, intron 2 of 9)	MER105|DNA|hAT-Charlie	54198	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
23	chr1	38551	38930	+	0	NA	Intergenic	MLT1E1A-int|LTR|ERVL-MaLR	-2659	NR_026818	645520		NR_026818	ENSG00000237613	FAM138A	F379|FAM138F	family with sequence similarity 138 member A	ncRNA
155057	chr22	37502551	37502850	+	0	NA	exon (NM_014550, exon 11 of 20)	exon (NM_014550, exon 11 of 20)	-16313	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
181043	chr5	35924321	35925350	+	0	NA	intron (NM_144647, intron 1 of 4)	intron (NM_144647, intron 1 of 4)	13787	NM_001042625	133690		NM_144647	ENSG00000152611	CAPSL	-	calcyphosine like	protein-coding
102148	chr17	75105571	75106330	+	0	NA	exon (NM_001271765, exon 7 of 7)	exon (NM_001271765, exon 7 of 7)	-4019	NM_001304272	79637		NM_024585	ENSG00000125449	ARMC7	-	armadillo repeat containing 7	protein-coding
36279	chr11	3801101	3801500	+	0	NA	intron (NR_027017, intron 1 of 7)	MIRb|SINE|MIR	3402	NM_001346401	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
139325	chr2	219550751	219550850	+	0	NA	TTS (NM_015311)	TTS (NM_015311)	-1653	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
96909	chr17	42132901	42133900	+	0	NA	intron (NM_001252039, intron 1 of 6)	intron (NM_001252039, intron 1 of 6)	10596	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
212477	chr7	128528971	128529130	+	0	NA	Intergenic	AluSx3|SINE|Alu	52302	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
189078	chr5	170281701	170282150	+	0	NA	intron (NM_005565, intron 3 of 20)	intron (NM_005565, intron 3 of 20)	15852	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
46691	chr11	128757101	128758330	+	0	NA	intron (NM_001167681, intron 2 of 9)	intron (NM_001167681, intron 2 of 9)	-61692	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
24038	chr1	235283871	235284250	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-43156	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
25943	chr10	11401221	11402430	+	0	NA	Intergenic	Intergenic	-57151	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
166295	chr3	112556771	112556930	+	0	NA	intron (NM_022488, intron 2 of 11)	SVA_D|Retroposon|SVA	-4470	NM_001348906	55032		NM_017945	ENSG00000138459	SLC35A5	-	solute carrier family 35 member A5	protein-coding
23374	chr1	228169451	228170500	+	0	NA	intron (NM_001010867, intron 1 of 2)	AluSg|SINE|Alu	4171	NM_001010867	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
190685	chr6	90771	90950	+	0	NA	Intergenic	Intergenic	57299	NR_109817	107105278		NR_109817		SEPTIN14P6	C6orf88|LINC00266-3|NCRNA00266-3|NCRNA00266C|SEPT14P6|dJ24O22.2	septin 14 pseudogene 6	pseudo
50712	chr12	48937601	48937800	+	0	NA	3' UTR (NM_001659, exon 5 of 5)	3' UTR (NM_001659, exon 5 of 5)	-12153	NM_001143782	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
222005	chr8	130018851	130018950	+	0	NA	Intergenic	AluSx|SINE|Alu	-1771	NM_001353269	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
70182	chr14	100383601	100384330	+	0	NA	intron (NM_024515, intron 2 of 6)	intron (NM_024515, intron 2 of 6)	7480	NM_001350947	79446		NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
220303	chr8	98165951	98166050	+	0	NA	Intergenic	Intergenic	48160	NM_015029	10940		NM_015029	ENSG00000104356	POP1	ANXD2	POP1 homolog, ribonuclease P/MRP subunit	protein-coding
74330	chr15	58477151	58477450	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	21435	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
215879	chr8	7695771	7696050	+	0	NA	Intergenic	Intergenic	-73674	NR_046351								
190418	chr5	179825701	179827030	+	0	NA	intron (NM_003900, intron 5 of 7).2	AluSx1|SINE|Alu	5460	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
90747	chr17	2038251	2038750	+	0	NA	intron (NR_144476, intron 6 of 12)	MER1B|DNA|hAT-Charlie	-3522	NM_080822	124641		NM_080822	ENSG00000262664	OVCA2	-	OVCA2 serine hydrolase domain containing	protein-coding
189934	chr5	177390441	177391800	+	0	NA	TTS (NM_001167579)	TTS (NM_001167579)	6686	NM_003052	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
127601	chr2	42946521	42947180	+	0	NA	Intergenic	Intergenic	92693	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
117654	chr19	23946701	23946900	+	0	NA	Intergenic	L1M2|LINE|L1	11153	NR_149007	100505851		NR_149007	ENSG00000269289	LOC100505851	-	uncharacterized LOC100505851	ncRNA
188224	chr5	150777551	150777650	+	0	NA	promoter-TSS (NM_032947)	promoter-TSS (NM_032947)	-346	NM_032947	85027		NM_032947	ENSG00000256235	SMIM3	C5orf62|MST150|NID67	small integral membrane protein 3	protein-coding
179608	chr4	185473351	185473850	+	0	NA	Intergenic	LTR9A1|LTR|ERV1	-1867	NM_001145411	256309		NM_152775	ENSG00000168491	CCDC110	CT52|KM-HN-1|KMHN1	coiled-coil domain containing 110	protein-coding
10921	chr1	84089401	84089730	+	0	NA	intron (NM_207578, intron 1 of 8)	L2|LINE|L2	11486	NM_001375576	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
38645	chr11	46367151	46368450	+	0	NA	intron (NM_001199267, intron 3 of 30)	intron (NM_001199267, intron 3 of 30)	6194	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
124163	chr19	56110771	56110930	+	0	NA	intron (NM_001351682, intron 1 of 1)	intron (NM_001351682, intron 1 of 1)	10445	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
146909	chr20	51560601	51561130	+	0	NA	intron (NM_001258292, intron 1 of 9)	intron (NM_001258292, intron 1 of 9)	1974	NM_001258294	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
88537	chr16	85435151	85435450	+	0	NA	Intergenic	Intergenic	-128975	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
192689	chr6	26273701	26275000	+	0	NA	TTS (NM_003525)	TTS (NM_003525)	1419	NM_003525	8346		NM_003525	ENSG00000278588	H2BC10	H2B/k|H2BC4|H2BC6|H2BC7|H2BC8|H2BFK|HIST1H2BI	H2B clustered histone 10	protein-coding
181349	chr5	40438901	40439950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-240490	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
214440	chr7	149960721	149961230	+	0	NA	intron (NM_001351028, intron 6 of 9)	intron (NM_001351028, intron 6 of 9)	-80380	NR_148939	100134040		NR_148939		LOC100134040	-	uncharacterized LOC100134040	ncRNA
162780	chr3	49088851	49088950	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluJo|SINE|Alu	4732	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
51174	chr12	50216901	50217980	+	0	NA	intron (NM_001113547, intron 1 of 7)	intron (NM_001113547, intron 1 of 7)	5218	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
69612	chr14	97592201	97592980	+	0	NA	Intergenic	Intergenic	94068	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
117904	chr19	32787351	32787650	+	0	NA	intron (NM_001366102, intron 11 of 32)	L1PA7|LINE|L1	67733	NM_001366102	91646		NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
160103	chr3	19146551	19147750	+	0	NA	Intergenic	CpG	-1360	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
17985	chr1	160512821	160513250	+	0	NA	intron (NM_001184714, intron 1 of 7)	L1PA10|LINE|L1	10220	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
127951	chr2	46547921	46548730	+	0	NA	intron (NM_012249, intron 2 of 4)	intron (NM_012249, intron 2 of 4)	-5748	NM_001371283	90423		NM_080653	ENSG00000250565	ATP6V1E2	ATP6E1|ATP6EL2|ATP6V1EL2|VMA4	ATPase H+ transporting V1 subunit E2	protein-coding
220009	chr8	90472721	90473030	+	0	NA	Intergenic	Intergenic	133188	NR_104062	101937451		NR_104062	ENSG00000253799	LINC01030	-	long intergenic non-protein coding RNA 1030	ncRNA
45436	chr11	118432351	118433150	+	0	NA	Intergenic	L1ME4b|LINE|L1	-3742	NM_001197104	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
179958	chr5	787051	787150	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2371	NM_001351303	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
33457	chr10	119048151	119049380	+	0	NA	intron (NM_003750, intron 17 of 21)	AluSg|SINE|Alu	11373	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
138159	chr2	202573901	202574480	+	0	NA	Intergenic	AluSx3|SINE|Alu	-60779	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
208157	chr7	64597271	64597430	+	0	NA	intron (NR_077227, intron 1 of 2)	AluY|SINE|Alu	14740	NR_033245	641746		NR_033245		LOC641746	-	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo
146659	chr20	50460471	50461300	+	0	NA	Intergenic	Intergenic	-49436	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
216993	chr8	23108821	23109080	+	0	NA	intron (NM_003841, intron 1 of 4)	L1MEf|LINE|L1	6029	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
71685	chr15	20103001	20103530	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-179479	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
65843	chr14	54947121	54947650	+	0	NA	intron (NM_007086, intron 24 of 25)	intron (NM_007086, intron 24 of 25)	-44559	NM_001024071	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
192560	chr6	25405751	25406230	+	0	NA	intron (NM_001173977, intron 2 of 36)	L2b|LINE|L2	126616	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
79566	chr16	983151	983450	+	0	NA	intron (NM_014587, intron 1 of 2)	CpG	1530	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
33935	chr10	124614351	124614700	+	0	NA	TTS (NM_022126)	TTS (NM_022126)	-89503	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
49867	chr12	37157451	37157550	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1159274	NM_001308340	144245		NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10 alpha-1,2-glucosyltransferase B	protein-coding
210778	chr7	100720501	100721650	+	0	NA	intron (NM_000799, intron 1 of 4)	intron (NM_000799, intron 1 of 4)	607	NM_000799	2056		NM_000799	ENSG00000130427	EPO	DBAL|ECYT5|EP|MVCD2	erythropoietin	protein-coding
137582	chr2	197270701	197270900	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	31719	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
116143	chr19	17378271	17378700	+	0	NA	Intergenic	Intergenic	-1143	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
107228	chr18	36771271	36771430	+	0	NA	intron (NM_001281739, intron 23 of 23)	intron (NM_001281739, intron 23 of 23)	57652	NM_001271953	25941		NM_015476	ENSG00000134779	TPGS2	C18orf10|HMFN0601|L17|PGs2	tubulin polyglutamylase complex subunit 2	protein-coding
164962	chr3	71271651	71271950	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-17958	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
172932	chr4	3513201	3514000	+	0	NA	intron (NR_110005, intron 7 of 7)	AluJb|SINE|Alu	18549	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
14021	chr1	120729501	120729850	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	5736	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
57797	chr12	123085771	123085930	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	4466	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
168494	chr3	143443801	143444150	+	0	NA	intron (NM_173653, intron 12 of 15)	intron (NM_173653, intron 12 of 15)	101729	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
226791	chr9	76670371	76670600	+	0	NA	intron (NM_001308047, intron 9 of 17)	L1PA2|LINE|L1	21930	NM_001330680	158471		NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2 with BCH domain	protein-coding
117753	chr19	29670121	29670380	+	0	NA	intron (NM_024310, intron 1 of 1)	L1MB2|LINE|L1	4789	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
235276	chrX	41868451	41868850	+	0	NA	intron (NM_001126055, intron 1 of 24)	MIRb|SINE|MIR	54384	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
18413	chr1	161444521	161445000	+	0	NA	Intergenic	CpG	-60697	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
60131	chr13	39145071	39145230	+	0	NA	Intergenic	ERV24_Prim-int|LTR|ERV1	106694	NM_001012754	387921		NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
120652	chr19	45078751	45080730	+	0	NA	intron (NM_001007269, intron 1 of 1)	intron (NM_001007269, intron 1 of 1)	480	NM_001007269	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
183368	chr5	77211701	77211900	+	0	NA	intron (NM_001029853, intron 1 of 20)	intron (NM_001029853, intron 1 of 20)	1120	NM_003719	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
234112	chrX	9515901	9516300	+	0	NA	intron (NM_001139467, intron 2 of 16)	intron (NM_001139467, intron 2 of 16)	51042	NM_005647	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
50224	chr12	46227251	46227550	+	0	NA	intron (NM_001278387, intron 6 of 17)	HAL1|LINE|L1	39116	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
6321	chr1	27656871	27657550	+	0	NA	Intergenic	AluSq2|SINE|Alu	5512	NR_151722	111216282		NR_151722	ENSG00000233975	LINC02574	HEAL	long intergenic non-protein coding RNA 2574	ncRNA
177705	chr4	121998071	121998230	+	0	NA	Intergenic	Intergenic	-46090	NM_001130698	7222		NM_003305	ENSG00000138741	TRPC3	SCA41|TRP3	transient receptor potential cation channel subfamily C member 3	protein-coding
192717	chr6	26336521	26336780	+	0	NA	Intergenic	MER90|LTR|ERV1	-28509	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
82159	chr16	14905221	14905680	+	0	NA	Intergenic	AluJb|SINE|Alu	-2267	NR_128712	103504726		NR_128712	ENSG00000265776	MIR3670-3	hsa-mir-3670-3	microRNA 3670-3	ncRNA
98764	chr17	48112351	48112450	+	0	NA	intron (NM_001330320, intron 2 of 6)	L2a|LINE|L2	4634	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
60838	chr13	45425801	45426730	+	0	NA	Intergenic	AluSc|SINE|Alu	-7810	NM_001286806	253512		NM_001010875	ENSG00000174032	SLC25A30	KMCP1	solute carrier family 25 member 30	protein-coding
226460	chr9	71727901	71728100	+	0	NA	intron (NM_001135820, intron 9 of 22)	AluSx1|SINE|Alu	40513	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
231935	chr9	133120511	133122280	+	0	NA	promoter-TSS (NM_006266)	promoter-TSS (NM_006266)	-155	NM_006266	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
202966	chr6	161259501	161260100	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	14261	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
197336	chr6	73418451	73419080	+	0	NA	Intergenic	AluSz|SINE|Alu	23937	NM_018665	55510		NM_018665	ENSG00000080007	DDX43	CT13|HAGE	DEAD-box helicase 43	protein-coding
127865	chr2	45681701	45681900	+	0	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	30125	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
120902	chr19	45596421	45596900	+	0	NA	intron (NM_005282, intron 1 of 1)	AluJb|SINE|Alu	5552	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
40623	chr11	64694371	64694930	+	0	NA	intron (NM_015080, intron 3 of 22)	intron (NM_015080, intron 3 of 22)	28547	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
231502	chr9	131399671	131399830	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	5664	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
55205	chr12	101773551	101773990	+	0	NA	intron (NM_024312, intron 7 of 20)	intron (NM_024312, intron 7 of 20)	-34298	NM_153694	50511		NM_153694	ENSG00000139351	SYCP3	COR1|RPRGL4|SCP3|SPGF4	synaptonemal complex protein 3	protein-coding
135224	chr2	159250071	159250230	+	0	NA	intron (NM_001330279, intron 8 of 9)	intron (NM_001330279, intron 8 of 9)	36553	NM_001330278	151525		NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
34370	chr10	132254751	132255100	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	-5817	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
215846	chr8	7091851	7092800	+	0	NA	Intergenic	CpG	-35586	NM_021010	1670		NM_021010	ENSG00000164816	DEFA5	DEF5|HD-5	defensin alpha 5	protein-coding
213105	chr7	131190971	131191630	+	0	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	81206	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
120535	chr19	44904801	44905030	+	0	NA	promoter-TSS (NM_001302691)	promoter-TSS (NM_001302691)	-881	NM_001302688	348		NM_000041	ENSG00000130203	APOE	AD2|APO-E|ApoE4|LDLCQ5|LPG	apolipoprotein E	protein-coding
112553	chr19	6550351	6550650	+	0	NA	Intergenic	Intergenic	19474	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
1503	chr1	2776651	2777330	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	23878	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
224280	chr9	6416271	6416780	+	0	NA	intron (NR_046386, intron 1 of 16)	intron (NR_046386, intron 1 of 16)	3326	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
132782	chr2	109905951	109906050	+	0	NA	3' UTR (NM_001205288, exon 3 of 3).2	3' UTR (NM_001205288, exon 3 of 3).2	7309	NM_001371340	100288695		NM_001205288	ENSG00000256671	LIMS4	LIMS3L	LIM zinc finger domain containing 4	protein-coding
83837	chr16	28865751	28866380	+	0	NA	5' UTR (NM_001308293, exon 4 of 11)	5' UTR (NM_001308293, exon 4 of 11)	2072	NM_015503	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
82357	chr16	15968871	15969230	+	0	NA	intron (NM_004996, intron 1 of 30)	AluSz|SINE|Alu	19434	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
76988	chr15	78276371	78276730	+	0	NA	intron (NM_018602, intron 6 of 7)	intron (NM_018602, intron 6 of 7)	10332	NM_001130183	55466		NM_018602	ENSG00000140403	DNAJA4	MST104|MSTP104|PRO1472	DnaJ heat shock protein family (Hsp40) member A4	protein-coding
114257	chr19	11550721	11551250	+	0	NA	TTS (NM_001308342)	TTS (NM_001308342)	4482	NM_001363673	84337		NM_032377	ENSG00000130165	ELOF1	ELF1	elongation factor 1	protein-coding
69957	chr14	99687071	99687230	+	0	NA	intron (NM_006668, intron 1 of 14)	intron (NM_006668, intron 1 of 14)	2852	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
96136	chr17	39662871	39663430	+	0	NA	3' UTR (NM_006804, exon 15 of 15)	3' UTR (NM_006804, exon 15 of 15)	-2199	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
27862	chr10	41125151	41125430	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1242755	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
174386	chr4	39033621	39034250	+	0	NA	Intergenic	MIRc|SINE|MIR	-1526	NM_001303228	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
76239	chr15	73974151	73974930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	17755	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
205922	chr7	25851701	25853080	+	0	NA	Intergenic	CpG	-62271	NR_157808	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
158144	chr22	50182771	50183230	+	0	NA	Intergenic	Intergenic	-2913	NR_135275	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
185159	chr5	119332551	119333980	+	0	NA	promoter-TSS (NM_001286814)	promoter-TSS (NM_001286814)	90	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
166413	chr3	113717201	113717400	+	0	NA	3' UTR (NM_025146, exon 5 of 5)	3' UTR (NM_025146, exon 5 of 5)	-20658	NM_001009899	205717		NM_001009899	ENSG00000176542	USF3	KIAA2018	upstream transcription factor family member 3	protein-coding
113737	chr19	10482721	10483100	+	0	NA	Intergenic	AluSx4|SINE|Alu	19861	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
197517	chr6	75781421	75782090	+	0	NA	intron (NM_001368139, intron 2 of 9)	AluSg4|SINE|Alu	32516	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
172505	chr4	2258051	2258350	+	0	NA	intron (NM_006454, intron 2 of 5)	intron (NM_006454, intron 2 of 5)	3909	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
224001	chr9	2157451	2158980	+	0	NA	promoter-TSS (NM_001289399)	promoter-TSS (NM_001289399)	-237	NM_001289399	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
218914	chr8	60790871	60791030	+	0	NA	intron (NM_017780, intron 3 of 37)	L2c|LINE|L2	49691	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
214054	chr7	143380701	143382030	+	0	NA	promoter-TSS (NM_001010972)	promoter-TSS (NM_001010972)	20	NM_003461	7791		NM_003461	ENSG00000159840	ZYX	ESP-2|HED-2	zyxin	protein-coding
59620	chr13	27960351	27961500	+	0	NA	TTS (NM_001265)	TTS (NM_001265)	7399	NR_135254	100132234		NR_135254	ENSG00000260704	LINC00543	-	long intergenic non-protein coding RNA 543	ncRNA
150374	chr21	42234401	42235680	+	0	NA	intron (NM_207628, intron 4 of 16)	CpG	15142	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
221681	chr8	126421071	126421430	+	0	NA	Intergenic	Intergenic	95755	NR_125421	101927657		NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
21240	chr1	204295801	204296000	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	64029	NM_014935	22874		NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
139541	chr2	224752521	224752880	+	0	NA	Intergenic	L2b|LINE|L2	-167303	NM_001257197	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
164616	chr3	66372401	66372950	+	0	NA	intron (NM_173471, intron 10 of 10)	intron (NM_173471, intron 10 of 10)	33092	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
3267	chr1	15128521	15128800	+	0	NA	intron (NR_027136, intron 1 of 4)	intron (NR_027136, intron 1 of 4)	23804	NR_027136	200197		NM_182534	ENSG00000175147	TMEM51-AS1	C1orf126	TMEM51 antisense RNA 1	ncRNA
125568	chr2	16150851	16150950	+	0	NA	Intergenic	L3|LINE|CR1	100473	NR_126559	104797537		NR_126559	ENSG00000236289	GACAT3	LINC01458|lncRNA-AC130710	gastric cancer associated transcript 3	ncRNA
69435	chr14	94136621	94137150	+	0	NA	Intergenic	Intergenic	-7281	NM_032036	83982		NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	interferon alpha inducible protein 27 like 2	protein-coding
35193	chr11	798001	799630	+	0	NA	promoter-TSS (NM_001191061)	promoter-TSS (NM_001191061)	-534	NM_001191061	79751		NM_024698	ENSG00000177542	SLC25A22	DEE3|EIEE3|GC-1|GC1|NET44	solute carrier family 25 member 22	protein-coding
197491	chr6	75608901	75609450	+	0	NA	intron (NM_015571, intron 1 of 23)	intron (NM_015571, intron 1 of 23)	7295	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
111528	chr19	4017101	4017950	+	0	NA	intron (NM_015897, intron 2 of 10)	intron (NM_015897, intron 2 of 10)	9789	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
224334	chr9	6762871	6763030	+	0	NA	intron (NR_148677, intron 1 of 21)	AluSq|SINE|Alu	4977	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
167669	chr3	129975321	129975950	+	0	NA	intron (NM_007117, intron 1 of 2)	CpG	915	NM_007117	7200		NM_007117	ENSG00000170893	TRH	Pro-TRH|TRF	thyrotropin releasing hormone	protein-coding
228611	chr9	105385401	105385900	+	0	NA	intron (NM_001330731, intron 15 of 15)	intron (NM_001330731, intron 15 of 15)	-62384	NM_001287192	83856		NM_031919	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1 like	protein-coding
197760	chr6	87239171	87239580	+	0	NA	intron (NM_015021, intron 5 of 7)	SVA_A|Retroposon|SVA	-83213	NM_020425	57150		NM_020425	ENSG00000111850	SMIM8	C6orf162|dJ102H19.2	small integral membrane protein 8	protein-coding
202612	chr6	158733451	158733950	+	0	NA	intron (NM_001318745, intron 8 of 14)	LTR10E|LTR|ERV1	31053	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
26132	chr10	13784051	13784550	+	0	NA	intron (NM_018027, intron 5 of 24)	MIR3|SINE|MIR	-76733	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
83014	chr16	22240701	22241830	+	0	NA	intron (NM_013302, intron 2 of 17).2	intron (NM_013302, intron 2 of 17).2	34987	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
169467	chr3	168249501	168249900	+	0	NA	non-coding (NR_021485, exon 1 of 16)	non-coding (NR_021485, exon 1 of 16)	178	NR_021485	93556		NR_021485		EGFEM1P	C3orf50|NCRNA00259	EGF like and EMI domain containing 1, pseudogene	pseudo
105029	chr17	82053501	82053700	+	0	NA	intron (NM_212492, intron 2 of 12)	intron (NM_212492, intron 2 of 12)	1702	NM_212492	2873		NM_004127	ENSG00000169727	GPS1	COPS1|CSN1|SGN1	G protein pathway suppressor 1	protein-coding
7992	chr1	37967271	37967600	+	0	NA	intron (NM_006802, intron 15 of 16)	AluY|SINE|Alu	-20378	NR_158629	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
97866	chr17	45020271	45020430	+	0	NA	Intergenic	Intergenic	31282	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
6046	chr1	27124701	27125100	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	30225	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
235027	chrX	40022401	40022750	+	0	NA	Intergenic	Intergenic	75383	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
211984	chr7	113118121	113119080	+	0	NA	promoter-TSS (NM_001352688)	promoter-TSS (NM_001352688)	-18	NM_001352687	401397		NM_001352687	ENSG00000214194	SMIM30	LINC00998|MAVI1	small integral membrane protein 30	protein-coding
168006	chr3	136820001	136820450	+	0	NA	intron (NM_025246, intron 1 of 1)	CpG	1099	NM_025246	80723		NM_025246	ENSG00000168917	SLC35G2	TMEM22	solute carrier family 35 member G2	protein-coding
94575	chr17	29639301	29640000	+	0	NA	intron (NM_033389, intron 13 of 14)	intron (NM_033389, intron 13 of 14)	-18227	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
39297	chr11	58581271	58581430	+	0	NA	intron (NM_053023, intron 1 of 10)	intron (NM_053023, intron 1 of 10)	2236	NR_024091	386607		NM_170768		ZFP91-CNTF	ZFP91|ZNF757|Zfp-91	ZFP91-CNTF readthrough (NMD candidate)	ncRNA
14856	chr1	146390651	146390950	+	0	NA	Intergenic	Intergenic	13993	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
167580	chr3	129552871	129553300	+	0	NA	Intergenic	Intergenic	4700	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
134960	chr2	151998871	151999300	+	0	NA	intron (NM_000726, intron 2 of 13)	HAL1ME|LINE|L1	-25107	NM_001330115	785		NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
106558	chr18	21684321	21684580	+	0	NA	TTS (NR_031565)	TTS (NR_031565)	932	NR_031565	100302135		NR_031565	ENSG00000221493	MIR320C1	MIR320C-1|MIRN320C1|hsa-mir-320c-1|mir-320c-1	microRNA 320c-1	ncRNA
124310	chr19	58009451	58010430	+	0	NA	Intergenic	Intergenic	-6594	NM_025027	80095		NM_025027	ENSG00000166704	ZNF606	ZNF328	zinc finger protein 606	protein-coding
143818	chr20	32479001	32479200	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	4390	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
164134	chr3	56731151	56731450	+	0	NA	TTS (NM_001377415)	TTS (NM_001377415)	44417	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
60720	chr13	44196271	44196430	+	0	NA	promoter-TSS (NR_107046)	promoter-TSS (NR_107046)	-150	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
14391	chr1	144218671	144219530	+	0	NA	Intergenic	Intergenic	29105	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
172164	chr4	1221601	1222280	+	0	NA	intron (NM_001377193, intron 5 of 9)	intron (NM_001377193, intron 5 of 9)	11820	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
204856	chr7	5824001	5825000	+	0	NA	intron (NR_023382, intron 1 of 6)	intron (NR_023382, intron 1 of 6)	1340	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
18849	chr1	167713801	167715000	+	0	NA	Intergenic	CpG	-7582	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
36759	chr11	9384451	9385480	+	0	NA	intron (NM_006391, intron 1 of 24)	CpG	313	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
119220	chr19	39459401	39459800	+	0	NA	intron (NM_001111020, intron 9 of 29)	intron (NM_001111020, intron 9 of 29)	-8622	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
72294	chr15	31004221	31004680	+	0	NA	intron (NM_001252024, intron 27 of 27).3	intron (NM_001252024, intron 27 of 27).3	-12822	NM_017762	54893		NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
118930	chr19	38743001	38743580	+	0	NA	intron (NM_144691, intron 1 of 20)	MSR1|Satellite|Satellite	1184	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
125596	chr2	17671101	17671330	+	0	NA	intron (NM_024624, intron 24 of 26)	intron (NM_024624, intron 24 of 26)	82595	NM_001142286	79677		NM_024624	ENSG00000163029	SMC6	SMC-6|SMC6L1|hSMC6	structural maintenance of chromosomes 6	protein-coding
8653	chr1	41802521	41803430	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	115947	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
59571	chr13	27428271	27428880	+	0	NA	intron (NM_002097, intron 2 of 8)	intron (NM_002097, intron 2 of 8)	3956	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
235249	chrX	41558421	41558930	+	0	NA	intron (NM_001367721, intron 18 of 26)	intron (NM_001367721, intron 18 of 26)	111215	NM_022567	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
105247	chr17	82417821	82418980	+	0	NA	promoter-TSS (NM_001330542)	promoter-TSS (NM_001330542)	53	NM_001369487	284004		NM_173620	ENSG00000169660	HEXD	HEXDC	hexosaminidase D	protein-coding
123202	chr19	52689421	52690860	+	0	NA	intron (NM_001348019, intron 1 of 6)	CpG	441	NM_001348015	55769		NM_018300	ENSG00000167766	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
11516	chr1	90966501	90966700	+	0	NA	intron (NM_201269, intron 2 of 5)	AluSx|SINE|Alu	54908	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
130356	chr2	85015701	85016350	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	44864	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
183431	chr5	78483801	78484000	+	0	NA	Intergenic	Intergenic	123283	NM_004866	9522		NM_004866	ENSG00000085365	SCAMP1	SCAMP|SCAMP37	secretory carrier membrane protein 1	protein-coding
105323	chr17	82587371	82587900	+	0	NA	intron (NM_004514, intron 8 of 8)	CpG	60809	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
73975	chr15	51968921	51969180	+	0	NA	intron (NM_001323903, intron 1 of 12)	AluSx|SINE|Alu	2728	NM_001323904	123169		NM_138792	ENSG00000166477	LEO1	RDL	LEO1 homolog, Paf1/RNA polymerase II complex component	protein-coding
162852	chr3	49337271	49337580	+	0	NA	intron (NM_199443, intron 1 of 20)	intron (NM_199443, intron 1 of 20)	2628	NM_003363	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
12112	chr1	100042601	100043100	+	0	NA	intron (NM_033055, intron 1 of 11)	AluSq2|SINE|Alu	4755	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
199945	chr6	127911521	127912380	+	0	NA	intron (NM_001164687, intron 1 of 5).2	THE1-int|LTR|ERVL-MaLR	6681	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
213564	chr7	139230551	139232500	+	0	NA	exon (NM_173569, exon 1 of 18)	exon (NM_173569, exon 1 of 18)	288	NM_173569	254048		NM_173569	ENSG00000157741	UBN2	-	ubinuclein 2	protein-coding
205044	chr7	6554671	6555430	+	0	NA	Intergenic	Intergenic	-3614	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
189162	chr5	171394921	171395180	+	0	NA	intron (NM_002520, intron 6 of 10)	AluSz|SINE|Alu	7201	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
37551	chr11	18705171	18706500	+	0	NA	exon (NM_173588, exon 22 of 23)	exon (NM_173588, exon 22 of 23)	7056	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
134648	chr2	144443551	144443850	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-75914	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
29857	chr10	72357321	72357850	+	0	NA	Intergenic	AluJb|SINE|Alu	-2666	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
67962	chr14	74853701	74854000	+	0	NA	non-coding (NR_169190, exon 6 of 6)	non-coding (NR_169190, exon 6 of 6)	22295	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
122539	chr19	49639481	49641200	+	0	NA	promoter-TSS (NM_006270)	promoter-TSS (NM_006270)	-197	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
16822	chr1	155612121	155613050	+	0	NA	intron (NM_001350780, intron 9 of 13)	intron (NM_001350780, intron 9 of 13)	2367	NM_018116	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
16993	chr1	155989201	155990430	+	0	NA	Intergenic	Intergenic	-10255	NM_001350112	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
178181	chr4	142386271	142387030	+	0	NA	intron (NR_169599, intron 3 of 22)	MER57A1|LTR|ERV1	16483	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
95264	chr17	35489921	35490180	+	0	NA	intron (NM_001363830, intron 2 of 4)	intron (NM_001363830, intron 2 of 4)	-2311	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
169838	chr3	177178901	177179300	+	0	NA	intron (NM_001374329, intron 1 of 15)	AluSq2|SINE|Alu	17378	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
181376	chr5	40641371	40641530	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-38465	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
196108	chr6	42370821	42371080	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	81101	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
171111	chr3	195510901	195511500	+	0	NA	Intergenic	AluSz6|SINE|Alu	32125	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
170509	chr3	186380601	186380800	+	0	NA	Intergenic	Intergenic	-18466	NM_001080744	1608		NM_001346	ENSG00000058866	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase gamma	protein-coding
65419	chr14	50834921	50835630	+	0	NA	Intergenic	Intergenic	-4113	NM_020921	51199		NM_016350	ENSG00000100503	NIN	SCKL7	ninein	protein-coding
61411	chr13	51793721	51793980	+	0	NA	intron (NR_165332, intron 2 of 8)	intron (NR_165332, intron 2 of 8)	9885	NM_001377932	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
89505	chr16	89158971	89159130	+	0	NA	promoter-TSS (NR_024347)	promoter-TSS (NR_024347)	-170	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
22663	chr1	223774201	223774480	+	0	NA	intron (NM_001748, intron 20 of 20)	intron (NM_001748, intron 20 of 20)	61801	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
238860	chrX	154492601	154492880	+	0	NA	Intergenic	Intergenic	-2111	NM_001142392	8273		NM_019848	ENSG00000126903	SLC10A3	DXS253E|P3	solute carrier family 10 member 3	protein-coding
7157	chr1	32239201	32239400	+	0	NA	non-coding (NR_026850, exon 3 of 7)	non-coding (NR_026850, exon 3 of 7)	2410	NR_026850	339483		NM_178546	ENSG00000291132	MTMR9LP	MTMR9L	myotubularin related protein 9 like, pseudogene	pseudo
146866	chr20	51480021	51481080	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	-27573	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
145334	chr20	41124671	41124830	+	0	NA	TTS (NM_003286)	TTS (NM_003286)	-12793	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
25984	chr10	11870221	11870480	+	0	NA	exon (NM_153256, exon 4 of 4)	exon (NM_153256, exon 4 of 4)	24360	NR_038222	219731		NR_038222	ENSG00000225778	PROSER2-AS1	-	PROSER2 antisense RNA 1	ncRNA
145001	chr20	37527421	37528550	+	0	NA	promoter-TSS (NM_006698)	promoter-TSS (NM_006698)	-54	NM_001167820	10904		NM_006698	ENSG00000166619	BLCAP	BC10	BLCAP apoptosis inducing factor	protein-coding
8441	chr1	40663901	40664330	+	0	NA	intron (NM_014747, intron 1 of 7)	intron (NM_014747, intron 1 of 7)	1567	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
125792	chr2	23925571	23926400	+	0	NA	intron (NM_001354107, intron 1 of 28)	intron (NM_001354107, intron 1 of 28)	1138	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
84997	chr16	31474601	31475150	+	0	NA	intron (NM_015927, intron 7 of 10)	MIRb|SINE|MIR	1670	NM_015927	7041		NM_015927	ENSG00000140682	TGFB1I1	ARA55|HIC-5|HIC5|TSC-5	transforming growth factor beta 1 induced transcript 1	protein-coding
48042	chr12	6964801	6966080	+	0	NA	TTS (NR_135032)	TTS (NR_135032)	1343	NR_029682	406933		NR_029682	ENSG00000207708	MIR141	MIRN141|mir-141	microRNA 141	ncRNA
183347	chr5	76818821	76819680	+	0	NA	exon (NM_005242, exon 1 of 2)	exon (NM_005242, exon 1 of 2)	220	NM_005242	2150		NM_005242	ENSG00000164251	F2RL1	GPR11|PAR2	F2R like trypsin receptor 1	protein-coding
107363	chr18	45960951	45961250	+	0	NA	intron (NM_020964, intron 1 of 43)	L2a|LINE|L2	6229	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
110383	chr19	1922771	1922930	+	0	NA	intron (NM_079834, intron 5 of 6)	intron (NM_079834, intron 5 of 6)	17451	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
49377	chr12	22411951	22412280	+	0	NA	Intergenic	AluSz6|SINE|Alu	-77401	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
11712	chr1	91869671	91869830	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	16401	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
64145	chr14	22883901	22884530	+	0	NA	intron (NM_173527, intron 1 of 4)	intron (NM_173527, intron 1 of 4)	993	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
235138	chrX	41089771	41090130	+	0	NA	intron (NM_001039590, intron 1 of 44)	AluJb|SINE|Alu	4505	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
155000	chr22	37315721	37315980	+	0	NA	TTS (NM_013385)	TTS (NM_013385)	33342	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
199671	chr6	122465351	122465650	+	0	NA	intron (NM_020755, intron 1 of 9)	HAL1|LINE|L1	6307	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
48554	chr12	10236771	10236930	+	0	NA	Intergenic	L2a|LINE|L2	-2111	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
183223	chr5	76325471	76326430	+	0	NA	3' UTR (NM_014979, exon 13 of 13)	3' UTR (NM_014979, exon 13 of 13)	-77335	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
114814	chr19	13807801	13808200	+	0	NA	intron (NM_023072, intron 3 of 12)	MSTA|LTR|ERVL-MaLR	12557	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
154894	chr22	37160001	37160500	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	-10334	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
112085	chr19	5345921	5346180	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-5238	NM_130854	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
66483	chr14	61649301	61649700	+	0	NA	intron (NR_039985, intron 1 of 2)	L1MC3|LINE|L1	-46013	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
135409	chr2	161063521	161064030	+	0	NA	Intergenic	Intergenic	-73180	NM_133484	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
205407	chr7	16432021	16432530	+	0	NA	Intergenic	Intergenic	-10737	NR_160656	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
67286	chr14	69393771	69394130	+	0	NA	intron (NM_004450, intron 2 of 3)	AluJo|SINE|Alu	4349	NM_004450	2079		NM_004450	ENSG00000100632	ERH	DROER	ERH mRNA splicing and mitosis factor	protein-coding
88251	chr16	82580301	82580500	+	0	NA	Intergenic	Intergenic	-46569	NM_001257	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
103935	chr17	79836201	79836400	+	0	NA	intron (NM_003655, intron 3 of 4)	intron (NM_003655, intron 3 of 4)	3140	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
145280	chr20	41007671	41007830	+	0	NA	intron (NR_145525, intron 2 of 2)	MIRb|SINE|MIR	-21072	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
174628	chr4	40309081	40310500	+	0	NA	intron (NR_121641, intron 2 of 3)	intron (NR_121641, intron 2 of 3)	2605	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
44290	chr11	102315371	102315830	+	0	NA	Intergenic	AluSx|SINE|Alu	-1884	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
62270	chr13	98574871	98575600	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	1872	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
160915	chr3	36380271	36380430	+	0	NA	promoter-TSS (NM_001292049)	promoter-TSS (NM_001292049)	-137	NM_001292049	6769		NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
63964	chr14	22132101	22132480	+	0	NA	Intergenic	Intergenic	300463	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
223442	chr8	143970801	143971550	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	2354	NM_201378	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
80097	chr16	2011501	2011900	+	0	NA	Intergenic	AluY|SINE|Alu	-1879	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
46029	chr11	122661601	122661800	+	0	NA	intron (NM_032873, intron 1 of 13)	MIRc|SINE|MIR	5978	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
49668	chr12	29380371	29381930	+	0	NA	promoter-TSS (NM_016570)	promoter-TSS (NM_016570)	22	NM_016570	51290		NM_016570	ENSG00000087502	ERGIC2	CDA14|Erv41|PTX1|cd002	ERGIC and golgi 2	protein-coding
67073	chr14	67943901	67944100	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	120408	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
119118	chr19	39345601	39346480	+	0	NA	intron (NM_001303614, intron 1 of 12)	intron (NM_001303614, intron 1 of 12)	3619	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
159198	chr3	12874971	12875330	+	0	NA	Intergenic	L3|LINE|CR1	10061	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
77277	chr15	82044221	82044630	+	0	NA	exon (NM_032246, exon 2 of 2)	exon (NM_032246, exon 2 of 2)	1593	NM_032246	84206		NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
202809	chr6	159654521	159655630	+	0	NA	Intergenic	Intergenic	38166	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
132807	chr2	110474921	110475250	+	0	NA	Intergenic	Intergenic	-2010	NR_038099	100288695		NM_001205288	ENSG00000256671	LIMS4	LIMS3L	LIM zinc finger domain containing 4	protein-coding
60637	chr13	42380701	42380900	+	0	NA	Intergenic	Intergenic	-44092	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
155281	chr22	38089101	38089830	+	0	NA	intron (NM_025045, intron 8 of 13)	CpG-19045	-5281	NM_013356	23539		NM_013356	ENSG00000100156	SLC16A8	MCT3|REMP	solute carrier family 16 member 8	protein-coding
230165	chr9	127773651	127774280	+	0	NA	intron (NM_170600, intron 2 of 11)	intron (NM_170600, intron 2 of 11)	-2596	NM_001252334	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
44265	chr11	102265271	102265630	+	0	NA	Intergenic	AluSz6|SINE|Alu	-52034	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
33041	chr10	110845551	110846280	+	0	NA	Intergenic	Intergenic	24989	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
156737	chr22	41809501	41809700	+	0	NA	intron (NM_024821, intron 2 of 6)	L2c|LINE|L2	8921	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
163493	chr3	51199371	51199530	+	0	NA	intron (NM_004947, intron 12 of 52)	L1PA3|LINE|L1	-185841	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
231706	chr9	131730521	131730980	+	0	NA	intron (NM_001377935, intron 1 of 26)	MIRb|SINE|MIR	6697	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
12951	chr1	110871621	110872000	+	0	NA	intron (NM_001040033, intron 1 of 8)	MER103C|DNA|hAT-Charlie	611	NM_001040033	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
93153	chr17	17755851	17756150	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	10302	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
151372	chr21	45885621	45887400	+	0	NA	intron (NM_001382276, intron 6 of 18)	intron (NM_001382276, intron 6 of 18)	38360	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
162919	chr3	49418871	49419830	+	0	NA	exon (NM_000481, exon 6 of 9)	exon (NM_000481, exon 6 of 9)	3123	NM_001164710	275		NM_000481	ENSG00000145020	AMT	GCE|GCE2|GCST|GCVT|NKH	aminomethyltransferase	protein-coding
134305	chr2	135979621	135979880	+	0	NA	intron (NM_001293312, intron 1 of 14)	intron (NM_001293312, intron 1 of 14)	-5426	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
177936	chr4	136650871	136651630	+	0	NA	Intergenic	Intergenic	-542506	NR_134640	729307		NR_134640		LINC02510	-	long intergenic non-protein coding RNA 2510	ncRNA
186537	chr5	138444801	138445330	+	0	NA	intron (NM_016606, intron 5 of 7)	intron (NM_016606, intron 5 of 7)	6008	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
137264	chr2	193701651	193701750	+	0	NA	Intergenic	Intergenic	-642569	NR_110222	101927406		NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
175244	chr4	57163601	57164310	+	0	NA	intron (NR_034081, intron 1 of 4)	CpG	-53570	NM_001253835	3490		NM_001553	ENSG00000163453	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin like growth factor binding protein 7	protein-coding
132586	chr2	106584971	106585250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	97746	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
85271	chr16	48575621	48576000	+	0	NA	intron (NM_153029, intron 1 of 6)	intron (NM_153029, intron 1 of 6)	34370	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
59737	chr13	29903371	29903730	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-15145	NR_046510	100874059		NR_046510	ENSG00000224329	LINC00297	NCRNA00297	long intergenic non-protein coding RNA 297	ncRNA
192332	chr6	22814551	22814650	+	0	NA	Intergenic	AluYe5|SINE|Alu	-96676	NR_134613	105374972		NR_134613		LINC03005	-	long intergenic non-protein coding RNA 3005	ncRNA
81279	chr16	4659051	4659580	+	0	NA	intron (NM_001142291, intron 5 of 15)	intron (NM_001142291, intron 5 of 15)	-12003	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
24775	chr1	248857871	248859780	+	0	NA	5' UTR (NM_001136036, exon 1 of 12)	5' UTR (NM_001136036, exon 1 of 12)	260	NM_001350073	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
58880	chr13	18287051	18287150	+	0	NA	Intergenic	Intergenic	91803	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
11224	chr1	88878771	88879100	+	0	NA	intron (NM_001514, intron 2 of 6)	MLT1G3|LTR|ERVL-MaLR	12632	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
34529	chr10	132788071	132788230	+	0	NA	Intergenic	CpG-3593	-2003	NM_177400	84504		NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B|SPAX8	NK6 homeobox 2	protein-coding
159166	chr3	12808651	12808950	+	0	NA	intron (NM_001162499, intron 4 of 14)	L2c|LINE|L2	12120	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
210982	chr7	101856121	101857380	+	0	NA	intron (NM_181552, intron 1 of 23)	intron (NM_181552, intron 1 of 23)	39124	NM_181552	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
207962	chr7	55113851	55113950	+	0	NA	intron (NM_001346900, intron 1 of 27)	intron (NM_001346900, intron 1 of 27)	4061	NM_001346900	1956		NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|ERRP|HER1|NISBD2|PIG61|mENA	epidermal growth factor receptor	protein-coding
200805	chr6	137902851	137903150	+	0	NA	Intergenic	L1M5|LINE|L1	-34767	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
23864	chr1	234792401	234792800	+	0	NA	Intergenic	Intergenic	-32544	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
194578	chr6	33422621	33423180	+	0	NA	intron (NM_006772, intron 1 of 18).2	intron (NM_006772, intron 1 of 18).2	2835	NM_006772	8831		NM_006772	ENSG00000197283	SYNGAP1	MRD5|RASA1|RASA5|SYNGAP	synaptic Ras GTPase activating protein 1	protein-coding
102167	chr17	75133951	75134930	+	0	NA	TTS (NM_001288610)	TTS (NM_001288610)	-2645	NM_001252377	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
232169	chr9	134168721	134169180	+	0	NA	Intergenic	Intergenic	-4386	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
24614	chr1	246514401	246514880	+	0	NA	Intergenic	AluYc|SINE|Alu	-7361	NM_001167740	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
210213	chr7	99197001	99197200	+	0	NA	intron (NM_001145715, intron 3 of 10)	L1MB7|LINE|L1	11015	NM_001145715	402569		NM_001145715	ENSG00000185467	KPNA7	IPOA8|OZEMA17	karyopherin subunit alpha 7	protein-coding
14699	chr1	145922921	145923400	+	0	NA	3' UTR (NM_005105, exon 6 of 6)	3' UTR (NM_005105, exon 6 of 6)	-3671	NR_147182	105371260		NR_147182	ENSG00000234222	LIX1L-AS1	-	LIX1L antisense RNA 1	ncRNA
199358	chr6	116098221	116098480	+	0	NA	Intergenic	AluJr|SINE|Alu	-2503	NM_152729	221294		NM_152729	ENSG00000178425	NT5DC1	C6orf200|LP2642|NT5C2L1	5'-nucleotidase domain containing 1	protein-coding
146898	chr20	51534701	51535450	+	0	NA	intron (NM_001258292, intron 1 of 9)	intron (NM_001258292, intron 1 of 9)	7644	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
6640	chr1	28931251	28931650	+	0	NA	intron (NM_001376013, intron 1 of 20)	Arthur1|DNA|hAT-Tip100	16874	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
230504	chr9	128256851	128257850	+	0	NA	intron (NM_001366246, intron 25 of 25)	intron (NM_001366246, intron 25 of 25)	-12320	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
165629	chr3	101735571	101736130	+	0	NA	intron (NM_024548, intron 6 of 10)	L1PA7|LINE|L1	11236	NM_001303401	79598		NM_024548	ENSG00000182504	CEP97	2810403B08Rik|LRRIQ2	centrosomal protein 97	protein-coding
179521	chr4	184820101	184820650	+	0	NA	intron (NM_001381885, intron 1 of 21)	intron (NM_001381885, intron 1 of 21)	-5251	NM_001381879	2180		NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long chain family member 1	protein-coding
51921	chr12	53696871	53697030	+	0	NA	Intergenic	Intergenic	-20620	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
127528	chr2	42315671	42316180	+	0	NA	intron (NM_019063, intron 17 of 22)	intron (NM_019063, intron 17 of 22)	44113	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
55929	chr12	109882771	109882930	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2309	NM_016433	51228		NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
108606	chr18	75244271	75244650	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	33663	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
200661	chr6	137095751	137096150	+	0	NA	Intergenic	Intergenic	-50770	NM_014432	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
208100	chr7	56373521	56373850	+	0	NA	Intergenic	Intergenic	74690	NR_029420	650226		NR_029420		LOC650226	-	ankyrin repeat domain containing 26 pseudogene	pseudo
52432	chr12	55828321	55828580	+	0	NA	exon (NM_032364, exon 2 of 7)	exon (NM_032364, exon 2 of 7)	-1158	NR_036479	440104		NM_001013700	ENSG00000293491	TMEM198B	-	transmembrane protein 198B (pseudogene)	pseudo
45574	chr11	118868351	118869000	+	0	NA	Intergenic	AluSc|SINE|Alu	-15217	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
217681	chr8	30111671	30112050	+	0	NA	intron (NM_001128208, intron 3 of 3)	intron (NM_001128208, intron 3 of 3)	16452	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
80129	chr16	2057101	2057300	+	0	NA	intron (NM_001370404, intron 9 of 40)	intron (NM_001370404, intron 9 of 40)	8998	NM_001318832	7249		NM_000548	ENSG00000103197	TSC2	LAM|PPP1R160|TSC4	TSC complex subunit 2	protein-coding
10174	chr1	61253451	61253630	+	0	NA	promoter-TSS (NR_104180)	promoter-TSS (NR_104180)	-22	NR_104180	645030		NR_104180	ENSG00000237853	NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
214830	chr7	151251021	151251980	+	0	NA	intron (NM_001003802, intron 2 of 13)	intron (NM_001003802, intron 2 of 13)	-2806	NM_001003801	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
46197	chr11	123456921	123457580	+	0	NA	intron (NM_001367421, intron 2 of 20)	intron (NM_001367421, intron 2 of 20)	26981	NM_001354837	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
215391	chr7	157480201	157480830	+	0	NA	intron (NR_110157, intron 2 of 3)	intron (NR_110157, intron 2 of 3)	14284	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
52254	chr12	54418801	54419930	+	0	NA	promoter-TSS (NR_120488)	promoter-TSS (NR_120488)	-99	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
108956	chr18	79516251	79516910	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-62702	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
104016	chr17	80114121	80114730	+	0	NA	intron (NM_000152, intron 15 of 19)	L1M4|LINE|L1	12844	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
65884	chr14	55128921	55130050	+	0	NA	intron (NM_002306, intron 1 of 5)	CpG	233	NM_002306	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
87012	chr16	68247621	68248150	+	0	NA	intron (NM_001363551, intron 1 of 5)	intron (NM_001363551, intron 1 of 5)	2512	NM_012320	23659		NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	phospholipase A2 group XV	protein-coding
110089	chr19	1522221	1522480	+	0	NA	Intergenic	AluSz|SINE|Alu	-1727	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
195720	chr6	39111051	39111580	+	0	NA	5' UTR (NM_001304793, exon 2 of 3)	5' UTR (NM_001304793, exon 2 of 3)	3871	NM_018322	55776		NM_018322	ENSG00000112167	SAYSD1	C6orf64	SAYSVFN motif domain containing 1	protein-coding
63328	chr13	114012451	114013780	+	0	NA	intron (NM_001320822, intron 15 of 23).2	CpG	-39039	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
22009	chr1	209821171	209821530	+	0	NA	Intergenic	Intergenic	-6622	NM_014388	27042		NM_014388	ENSG00000117597	UTP25	C1orf107|DEF|DIEXF|DJ434O14.5	UTP25 small subunit processome component	protein-coding
237067	chrX	103562321	103562580	+	0	NA	Intergenic	Intergenic	-7497	NR_131237	105373300		NR_131236		LINC02589	-	long intergenic non-protein coding RNA 2589	ncRNA
227984	chr9	95426401	95427200	+	0	NA	Intergenic	(CCCGG)n|Simple_repeat|Simple_repeat	-36809	NR_038982	100507346		NR_038982		LOC100507346	-	uncharacterized LOC100507346	ncRNA
107069	chr18	33578121	33578630	+	0	NA	5' UTR (NM_030632, exon 1 of 12)	5' UTR (NM_030632, exon 1 of 12)	156	NM_030632	80816		NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	ASXL transcriptional regulator 3	protein-coding
100235	chr17	59335201	59335400	+	0	NA	intron (NM_001005404, intron 1 of 4)	L2a|LINE|L2	3645	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
139416	chr2	222655271	222657050	+	0	NA	promoter-TSS (NR_130154)	promoter-TSS (NR_130154)	-68	NR_130154	10056		NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC|RILDBC1|RJBS	phenylalanyl-tRNA synthetase subunit beta	protein-coding
96672	chr17	40828071	40828230	+	0	NA	intron (NR_160886, intron 1 of 2)	L2b|LINE|L2	-5536	NM_000421	3858		NM_000421	ENSG00000186395	KRT10	BCIE|BIE|CK10|EHK|EHK2|EHK2A|EHK2B|IHL|K10|KPP	keratin 10	protein-coding
218563	chr8	54458971	54459130	+	0	NA	intron (NM_022454, intron 1 of 1)	CpG	1115	NM_022454	64321		NM_022454	ENSG00000164736	SOX17	VUR3	SRY-box transcription factor 17	protein-coding
42653	chr11	72440821	72441080	+	0	NA	Intergenic	AluSg4|SINE|Alu	-6266	NM_001258394	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
46399	chr11	126316521	126316780	+	0	NA	intron (NM_014026, intron 2 of 5)	AluSx1|SINE|Alu	12590	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
67460	chr14	70821251	70823430	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-12827	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
122728	chr19	50023851	50024150	+	0	NA	intron (NM_001308420, intron 1 of 12)	AluSx|SINE|Alu	1372	NM_001308420	51231		NM_016440	ENSG00000105053	VRK3	-	VRK serine/threonine kinase 3	protein-coding
114081	chr19	11104271	11104800	+	0	NA	intron (NM_001195800, intron 3 of 15)	AluSz|SINE|Alu	-8939	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
80327	chr16	2441251	2441850	+	0	NA	intron (NM_001323538, intron 7 of 15)	AluJr|SINE|Alu	-3842	NR_106825	102465459		NR_106825	ENSG00000283180	MIR6767	hsa-mir-6767	microRNA 6767	ncRNA
204580	chr7	5287571	5288900	+	0	NA	intron (NM_153247, intron 2 of 10)	intron (NM_153247, intron 2 of 10)	5292	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
111601	chr19	4096151	4096530	+	0	NA	intron (NM_030662, intron 8 of 10)	intron (NM_030662, intron 8 of 10)	27782	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
163215	chr3	50247701	50247900	+	0	NA	intron (NM_001166425, intron 1 of 8)	intron (NM_001166425, intron 1 of 8)	890	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
121654	chr19	47488751	47488850	+	0	NA	intron (NR_038456, intron 10 of 11)	AluY|SINE|Alu	4518	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
12248	chr1	100437451	100437950	+	0	NA	intron (NM_001319210, intron 5 of 16)	intron (NM_001319210, intron 5 of 16)	85194	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
212499	chr7	128653251	128654050	+	0	NA	non-coding (NR_024368, exon 5 of 5)	non-coding (NR_024368, exon 5 of 5)	12409	NR_024368	402483		NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
37237	chr11	14536951	14537850	+	0	NA	intron (NM_148976, intron 2 of 10)	intron (NM_148976, intron 2 of 10)	-16955	NM_001143937	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
67108	chr14	68375471	68375630	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	253237	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
72467	chr15	32453071	32453430	+	0	NA	intron (NM_001277308, intron 2 of 18)	MIRb|SINE|MIR	2384	NM_001277308	728047		NM_001277308	ENSG00000206127	GOLGA8O	-	golgin A8 family member O	protein-coding
52615	chr12	56242601	56242800	+	0	NA	3' UTR (NM_173595, exon 28 of 28)	3' UTR (NM_173595, exon 28 of 28)	11983	NM_001135195	283375		NM_173596	ENSG00000139540	SLC39A5	LZT-Hs7|MYP24|ZIP5	solute carrier family 39 member 5	protein-coding
53580	chr12	67678671	67679230	+	0	NA	Intergenic	L2c|LINE|L2	30205	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
67495	chr14	70933801	70934000	+	0	NA	intron (NM_014982, intron 1 of 35)	Charlie25|DNA|hAT-Charlie	26441	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
107110	chr18	35061501	35061700	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	20187	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
67801	chr14	73769051	73769350	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-8897	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
47918	chr12	6771951	6772850	+	0	NA	promoter-TSS (NM_002286)	promoter-TSS (NM_002286)	-120	NM_002286	3902		NM_002286	ENSG00000089692	LAG3	CD223	lymphocyte activating 3	protein-coding
134667	chr2	144467651	144468150	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-51714	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
52774	chr12	56682251	56682350	+	0	NA	intron (NM_001282601, intron 1 of 6)	intron (NM_001282601, intron 1 of 6)	5984	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
204669	chr7	5479771	5480130	+	0	NA	3' UTR (NM_001367781, exon 5 of 5)	3' UTR (NM_001367781, exon 5 of 5)	15967	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
121904	chr19	48395371	48396580	+	0	NA	intron (NM_000836, intron 2 of 13)	intron (NM_000836, intron 2 of 13)	2307	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
207616	chr7	44987801	44988000	+	0	NA	Intergenic	Intergenic	-1204	NR_152596	285958		NR_003697	ENSG00000232956	SNHG15	C7orf40|Linc-Myo1g|MYO1GUT	small nucleolar RNA host gene 15	ncRNA
111951	chr19	4799471	4800530	+	0	NA	3' UTR (NM_018708, exon 1 of 1)	3' UTR (NM_018708, exon 1 of 1)	8266	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
215897	chr8	8067071	8067950	+	0	NA	Intergenic	Intergenic	21579	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
142403	chr20	3852101	3852500	+	0	NA	intron (NM_001385663, intron 1 of 7)	intron (NM_001385663, intron 1 of 7)	5466	NM_020746	57506		NM_020746	ENSG00000088888	MAVS	CARDIF|IPS-1|IPS1|VISA	mitochondrial antiviral signaling protein	protein-coding
28564	chr10	50658171	50658330	+	0	NA	Intergenic	Intergenic	33299	NR_126411	104355295		NR_126411		SGMS1-AS1	-	SGMS1 antisense RNA 1	ncRNA
30686	chr10	80519901	80520100	+	0	NA	3' UTR (NM_001351267, exon 11 of 11)	3' UTR (NM_001351267, exon 11 of 11)	15942	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
176171	chr4	83281921	83282950	+	0	NA	intron (NM_015697, intron 1 of 6)	intron (NM_015697, intron 1 of 6)	2363	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
149235	chr21	25571571	25572050	+	0	NA	intron (NR_001458, intron 2 of 2)	intron (NR_001458, intron 2 of 2)	-2170	NR_030784	406947		NR_030784	ENSG00000283904	MIR155	MIRN155|miRNA155|mir-155	microRNA 155	ncRNA
137786	chr2	199485971	199486130	+	0	NA	Intergenic	Intergenic	-14784	NM_015265	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
121753	chr19	47751751	47751850	+	0	NA	intron (NM_015710, intron 5 of 12)	MIR|SINE|MIR	-4053	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
94603	chr17	29742401	29743200	+	0	NA	intron (NM_033389, intron 2 of 14)	AluSz|SINE|Alu	18632	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
114200	chr19	11423651	11424430	+	0	NA	intron (NM_001302453, intron 7 of 12)	intron (NM_001302453, intron 7 of 12)	-4726	NM_001035223	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
219642	chr8	80240371	80241030	+	0	NA	promoter-TSS (NR_049894)	promoter-TSS (NR_049894)	-689	NR_049894	100847056		NR_049894	ENSG00000265588	MIR5708	-	microRNA 5708	ncRNA
26676	chr10	22621501	22621700	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	92508	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
148925	chr21	9246971	9247130	+	0	NA	Intergenic	Intergenic	-117289	NR_038329	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
215436	chr7	157688621	157689280	+	0	NA	intron (NM_130842, intron 11 of 21)	CpG	-114528	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
186316	chr5	134585451	134585630	+	0	NA	Intergenic	AluJb|SINE|Alu	47288	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
29658	chr10	71916051	71916150	+	0	NA	Intergenic	Intergenic	-48295	NM_004273	9469		NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate sulfotransferase 3	protein-coding
20547	chr1	198703351	198703930	+	0	NA	intron (NM_002838, intron 7 of 32)	intron (NM_002838, intron 7 of 32)	64600	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
194986	chr6	35367901	35368100	+	0	NA	intron (NM_001171819, intron 2 of 6)	MIRb|SINE|MIR	25442	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
79762	chr16	1361571	1361730	+	0	NA	intron (NM_032520, intron 3 of 10)	AluYm1|SINE|Alu	9719	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
105268	chr17	82448721	82450000	+	0	NA	TTS (NR_036519)	TTS (NR_036519)	366	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
123185	chr19	52453271	52453750	+	0	NA	promoter-TSS (NM_001366182)	promoter-TSS (NM_001366182)	-43	NM_001099694	147660		NM_152472	ENSG00000258405	ZNF578	-	zinc finger protein 578	protein-coding
95497	chr17	36288571	36288730	+	0	NA	intron (NR_164156, intron 1 of 5)	intron (NR_164156, intron 1 of 5)	14451	NR_164156	101929950		NR_164156		LOC101929950	-	puromycin-sensitive aminopeptidase-like protein	pseudo
196824	chr6	46325371	46326170	+	0	NA	5' UTR (NM_005822, exon 1 of 4)	5' UTR (NM_005822, exon 1 of 4)	122	NM_005822	10231		NM_005822	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
125825	chr2	24351551	24352150	+	0	NA	intron (NM_147152, intron 1 of 29)	Tigger7|DNA|TcMar-Tigger	8686	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
9591	chr1	52071721	52071980	+	0	NA	intron (NM_001243767, intron 3 of 4)	intron (NM_001243767, intron 3 of 4)	15555	NM_152265	91408		NM_152265	ENSG00000134717	BTF3L4	-	basic transcription factor 3 like 4	protein-coding
111865	chr19	4639011	4641180	+	0	NA	promoter-TSS (NM_001167942)	promoter-TSS (NM_001167942)	78	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
3153	chr1	12596051	12596900	+	0	NA	5' UTR (NM_001324370, exon 1 of 6)	5' UTR (NM_001324370, exon 1 of 6)	138	NM_001324370	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
195173	chr6	35919201	35920400	+	0	NA	intron (NR_034069, intron 2 of 15)	intron (NR_034069, intron 2 of 15)	1298	NM_003137	6732		NM_003137	ENSG00000096063	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
132978	chr2	111490371	111490890	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	4531	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
180923	chr5	34490551	34490850	+	0	NA	Intergenic	Intergenic	-165628	NM_001145522	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
191056	chr6	3261001	3261750	+	0	NA	intron (NM_001128592, intron 1 of 3)	intron (NM_001128592, intron 1 of 3)	2428	NM_001128591	389362		NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding
13287	chr1	112958751	112959830	+	0	NA	intron (NR_103743, intron 1 of 2)	AluSp|SINE|Alu	2875	NR_103744	100506392		NR_103743	ENSG00000226419	SLC16A1-AS1	-	SLC16A1 antisense RNA 1	ncRNA
113312	chr19	8576401	8577930	+	0	NA	intron (NM_012335, intron 1 of 27)	intron (NM_012335, intron 1 of 27)	277	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
153392	chr22	24622521	24623100	+	0	NA	intron (NM_013421, intron 10 of 16)	intron (NM_013421, intron 10 of 16)	-10105	NR_024494	644165		NR_024494		BCRP3	BCR3|BCRL3|BCRL6	BCR pseudogene 3	pseudo
232010	chr9	133358751	133358850	+	0	NA	intron (NM_017503, intron 3 of 5)	intron (NM_017503, intron 3 of 5)	2250	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
81759	chr16	11495371	11496300	+	0	NA	intron (NM_001370704, intron 10 of 66)	MIR|SINE|MIR	30575	NR_110907	101927131		NR_110907	ENSG00000262999	LOC101927131	-	uncharacterized LOC101927131	ncRNA
85751	chr16	56732951	56733130	+	0	NA	intron (NM_014669, intron 1 of 21)	intron (NM_014669, intron 1 of 21)	2911	NM_014669	9688		NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
24255	chr1	236387001	236387430	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-7071	NM_145861	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
153143	chr22	23766071	23766230	+	0	NA	TTS (NM_001376905)	TTS (NM_001376905)	1822	NR_125756	400916		NM_213720	ENSG00000250479	CHCHD10	C22orf16|FTDALS2|IMMD|MIX17A|N27C7-4|SMAJ	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding
120427	chr19	44025151	44025950	+	0	NA	intron (NM_001129996, intron 1 of 3)	CpG	171	NM_001129996	7673		NM_013360	ENSG00000159885	ZNF222	-	zinc finger protein 222	protein-coding
83638	chr16	28296401	28296730	+	0	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	4040	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
111739	chr19	4358751	4358850	+	0	NA	intron (NM_001159846, intron 9 of 10)	MER113A|DNA|hAT-Charlie	15238	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
223711	chr8	144453001	144453200	+	0	NA	intron (NM_138496, intron 3 of 4)	intron (NM_138496, intron 3 of 4)	-8660	NM_013432	4796		NM_013432	ENSG00000160949	TONSL	IKBR|NFKBIL2|SEMDSP	tonsoku like, DNA repair protein	protein-coding
126258	chr2	27110901	27111300	+	0	NA	intron (NM_001301324, intron 1 of 5)	LTR12C|LTR|ERV1	8027	NM_001301324	10669		NM_006569	ENSG00000138028	CGREF1	CGR11	cell growth regulator with EF-hand domain 1	protein-coding
161473	chr3	42345771	42346350	+	0	NA	Intergenic	MER41B|LTR|ERV1	64550	NM_144634	131375		NM_144634	ENSG00000157093	LYZL4	LYC4|LYZA	lysozyme like 4	protein-coding
97376	chr17	43321221	43321480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21119	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
62750	chr13	106570271	106571200	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-2598	NM_018011	55082		NM_018011	ENSG00000134884	ARGLU1	-	arginine and glutamate rich 1	protein-coding
92380	chr17	8241601	8241800	+	0	NA	intron (NM_025099, intron 2 of 22)	AluJb|SINE|Alu	6356	NR_046431	80169		NM_025099	ENSG00000178971	CTC1	AAF-132|AAF132|C17orf68|CRMCC|tmp494178	CST telomere replication complex component 1	protein-coding
88771	chr16	87162101	87162830	+	0	NA	Intergenic	Intergenic	-49650	NR_110939	101928708		NR_110939	ENSG00000261095	LOC101928708	-	uncharacterized LOC101928708	ncRNA
105296	chr17	82500421	82500880	+	0	NA	Intergenic	Intergenic	-19082	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
169448	chr3	167650351	167650650	+	0	NA	intron (NM_001348951, intron 2 of 18)	intron (NM_001348951, intron 2 of 18)	3442	NM_001366157	151790		NM_178824	ENSG00000174776	WDR49	-	WD repeat domain 49	protein-coding
229021	chr9	113886321	113886880	+	0	NA	intron (NM_133374, intron 1 of 13)	intron (NM_133374, intron 1 of 13)	10291	NM_001318042	114991		NM_133374	ENSG00000157657	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
96225	chr17	39781021	39782150	+	0	NA	intron (NM_001284514, intron 6 of 8)	intron (NM_001284514, intron 6 of 8)	-3360	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
132034	chr2	100964251	100964350	+	0	NA	intron (NM_002518, intron 8 of 20)	intron (NM_002518, intron 8 of 20)	12861	NR_110213	101927142		NR_110213		NPAS2-AS1	-	NPAS2 antisense RNA 1	ncRNA
17059	chr1	156101501	156101700	+	0	NA	intron (NM_001282625, intron 3 of 12)	L2b|LINE|L2	-13111	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
125547	chr2	15316371	15316830	+	0	NA	intron (NR_052013, intron 38 of 50)	L1PA6|LINE|L1	244734	NM_015909	51594		NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	NBAS subunit of NRZ tethering complex	protein-coding
63098	chr13	113275401	113275600	+	0	NA	Intergenic	MER4B|LTR|ERV1	12580	NR_107042	102465874		NR_107042	ENSG00000277942	MIR8075	hsa-mir-8075	microRNA 8075	ncRNA
94069	chr17	27469271	27469630	+	0	NA	intron (NM_001367810, intron 1 of 18)	intron (NM_001367810, intron 1 of 18)	-2514	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
58133	chr12	124901701	124901900	+	0	NA	Intergenic	AluSz|SINE|Alu	12850	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
132301	chr2	105176571	105176730	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	32537	NR_136172	105373984		NR_136172	ENSG00000226508	LINC01918	-	long intergenic non-protein coding RNA 1918	ncRNA
103502	chr17	78413011	78413750	+	0	NA	intron (NR_110601, intron 6 of 8)	intron (NR_110601, intron 6 of 8)	34731	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
42334	chr11	68493951	68494500	+	0	NA	intron (NM_001352362, intron 2 of 24)	L1MA3|LINE|L1	33473	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
43854	chr11	88174701	88175550	+	0	NA	intron (NM_022337, intron 1 of 2)	CpG	318	NM_022337	23682		NM_022337	ENSG00000123892	RAB38	NY-MEL-1|rrGTPbp	RAB38, member RAS oncogene family	protein-coding
77757	chr15	85758351	85758850	+	0	NA	TTS (NM_022480)	TTS (NM_022480)	125	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
188409	chr5	154072001	154072630	+	0	NA	Intergenic	Intergenic	33348	NM_005927	4238		NM_005927	ENSG00000037749	MFAP3	-	microfibril associated protein 3	protein-coding
34895	chr11	381201	381400	+	0	NA	intron (NM_178537, intron 19 of 19)	intron (NM_178537, intron 19 of 19)	-11296	NM_001303029	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
34401	chr10	132386371	132386900	+	0	NA	Intergenic	Intergenic	-10565	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
232237	chr9	134386221	134386600	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	6999	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
27372	chr10	30792021	30792430	+	0	NA	Intergenic	L2a|LINE|L2	69006	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
102239	chr17	75249921	75250800	+	0	NA	intron (NM_001291641, intron 1 of 17)	intron (NM_001291641, intron 1 of 17)	11246	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
39464	chr11	60981571	60981930	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	10070	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
68407	chr14	80988251	80988350	+	0	NA	intron (NM_001142626, intron 1 of 8)	MSTA|LTR|ERVL-MaLR	32679	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
9468	chr1	50704071	50704350	+	0	NA	intron (NM_007051, intron 7 of 18)	intron (NM_007051, intron 7 of 18)	256057	NM_007051	11124		NM_007051	ENSG00000185104	FAF1	CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1	Fas associated factor 1	protein-coding
27901	chr10	41888521	41888880	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	479345	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
88948	chr16	87842271	87842950	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-7950	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
179345	chr4	183095921	183096180	+	0	NA	TTS (NR_024008)	TTS (NR_024008)	3149	NR_024008	152641		NM_153008	ENSG00000251359	WWC2-AS2	C4orf38	WWC2 antisense RNA 2	ncRNA
118637	chr19	37292401	37292630	+	0	NA	Intergenic	SST1|Satellite|centr	-20322	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
210495	chr7	100171201	100172650	+	0	NA	exon (NM_152742, exon 7 of 10)	exon (NM_152742, exon 7 of 10)	-3308	NM_024637	79690		NM_024637	ENSG00000197093	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
179870	chr5	598551	598800	+	0	NA	Intergenic	L1M5|LINE|L1	13535	NR_103444	100996325		NR_103444		CEP72-DT	-	CEP72 divergent transcript	ncRNA
49179	chr12	15269001	15269280	+	0	NA	Intergenic	Intergenic	-47723	NM_032918	85004		NM_032918	ENSG00000134533	RERG	-	RAS like estrogen regulated growth inhibitor	protein-coding
35016	chr11	550571	551230	+	0	NA	intron (NM_198075, intron 8 of 13)	intron (NM_198075, intron 8 of 13)	-8362	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
193152	chr6	29636071	29636630	+	0	NA	Intergenic	Intergenic	-3167	NM_001470	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
167856	chr3	134249451	134251630	+	0	NA	exon (NM_002958, exon 1 of 15)	exon (NM_002958, exon 1 of 15)	204	NM_001005861	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
33610	chr10	119545051	119545350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2481	NM_001005339	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
34860	chr11	335771	336130	+	0	NA	Intergenic	MER39|LTR|ERV1	-15090	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
213282	chr7	134750021	134750380	+	0	NA	Intergenic	Intergenic	-29434	NM_004342	800		NM_004342	ENSG00000122786	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22|h-CD	caldesmon 1	protein-coding
106921	chr18	26185251	26185350	+	0	NA	intron (NM_144662, intron 6 of 6)	MLT1L|LTR|ERVL-MaLR	-41145	NR_121653	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
32585	chr10	103485621	103486280	+	0	NA	intron (NR_120675, intron 3 of 3)	intron (NR_120675, intron 3 of 3)	-6710	NM_001129742	119395		NM_182494	ENSG00000183128	CALHM3	FAM26A|bA225H22.7	calcium homeostasis modulator 3	protein-coding
234533	chrX	19660001	19660200	+	0	NA	intron (NM_001353892, intron 7 of 17)	intron (NM_001353892, intron 7 of 17)	10899	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
4819	chr1	23610701	23611100	+	0	NA	Intergenic	LTR33|LTR|ERVL	-16434	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
207134	chr7	42934071	42934300	+	0	NA	intron (NR_156497, intron 1 of 3)	AluSx|SINE|Alu	1809	NM_031903	64983		NM_031903	ENSG00000106591	MRPL32	HSPC283|L32mt|MRP-L32|bL32m|bMRP-59b	mitochondrial ribosomal protein L32	protein-coding
183841	chr5	86970951	86971450	+	0	NA	Intergenic	Intergenic	143754	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
6772	chr1	30749611	30750230	+	0	NA	intron (NM_006762, intron 1 of 7)	intron (NM_006762, intron 1 of 7)	7854	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
50516	chr12	47826801	47827200	+	0	NA	Intergenic	Intergenic	-7097	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
90969	chr17	2695351	2695950	+	0	NA	intron (NM_015229, intron 13 of 25)	intron (NM_015229, intron 13 of 25)	-2731	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
213913	chr7	142519271	142519430	+	0	NA	intron (NM_001363538, intron 11 of 11)	LTR33|LTR|ERVL	44823	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
75385	chr15	65736251	65736550	+	0	NA	intron (NM_001376919, intron 7 of 31)	AluSx1|SINE|Alu	-17068	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
87343	chr16	70343051	70343350	+	0	NA	intron (NR_039997, intron 1 of 4)	L2b|LINE|L2	3547	NR_039997	100506083		NR_039997	ENSG00000261777	DDX19A-DT	-	DDX19A divergent transcript	ncRNA
122357	chr19	49338851	49339350	+	0	NA	intron (NM_001774, intron 6 of 7)	intron (NM_001774, intron 6 of 7)	3694	NM_001040031	951		NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
123269	chr19	53463151	53463500	+	0	NA	Intergenic	Intergenic	-4408	NM_001004301	126017		NM_001004301	ENSG00000198346	ZNF813	-	zinc finger protein 813	protein-coding
60517	chr13	41356701	41357980	+	0	NA	intron (NM_024561, intron 10 of 19)	L1MC5a|LINE|L1	-45302	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
39787	chr11	61952551	61952650	+	0	NA	intron (NR_134580, intron 2 of 10)	AluSz|SINE|Alu	2249	NM_004183	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
49719	chr12	31303521	31303780	+	0	NA	intron (NM_001135812, intron 1 of 5)	intron (NM_001135812, intron 1 of 5)	-20666	NR_026806	79857		NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
38830	chr11	47313201	47313600	+	0	NA	intron (NM_001376612, intron 26 of 31)	AluSx|SINE|Alu	39302	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
219890	chr8	85656821	85657350	+	0	NA	Intergenic	Intergenic	-1409	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
170475	chr3	185936751	185939030	+	0	NA	5' UTR (NM_004593, exon 1 of 9)	5' UTR (NM_004593, exon 1 of 9)	124	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
73621	chr15	44578151	44579250	+	0	NA	intron (NM_025137, intron 30 of 39)	L1MEf|LINE|L1	41553	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
112037	chr19	5126671	5127230	+	0	NA	intron (NM_015015, intron 11 of 22)	intron (NM_015015, intron 11 of 22)	157837	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
15907	chr1	151616901	151617300	+	0	NA	intron (NM_030918, intron 1 of 11)	intron (NM_030918, intron 1 of 11)	5050	NM_030918	81609		NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin 27	protein-coding
30879	chr10	86938501	86938700	+	0	NA	intron (NM_024756, intron 6 of 6)	intron (NM_024756, intron 6 of 6)	-17159	NM_001330120	6623		NM_003087	ENSG00000173267	SNCG	BCSG1|SR	synuclein gamma	protein-coding
55375	chr12	104299801	104300000	+	0	NA	intron (NM_001261446, intron 2 of 13)	intron (NM_001261446, intron 2 of 13)	-3839	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
168148	chr3	138961251	138961350	+	0	NA	Intergenic	Intergenic	14083	NM_001040061	401089		NM_001040061	ENSG00000206262	FOXL2NB	C3orf72	FOXL2 neighbor	protein-coding
153675	chr22	29061971	29062130	+	0	NA	promoter-TSS (NM_015370)	promoter-TSS (NM_015370)	-131	NM_015370	25770		NM_015370	ENSG00000100249	C22orf31	HS747E2A|bK747E2.1	chromosome 22 open reading frame 31	protein-coding
34200	chr10	129042571	129043130	+	0	NA	Intergenic	Intergenic	130017	NR_148990	728327		NR_148990	ENSG00000224190	LINC02667	-	long intergenic non-protein coding RNA 2667	ncRNA
94970	chr17	32232301	32232700	+	0	NA	Intergenic	Intergenic	-33332	NM_001330181	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
190930	chr6	2877671	2878530	+	0	NA	Intergenic	L1PBa1|LINE|L1	-1590	NR_033851	221756		NM_182544		SERPINB9P1	SERPINB9P	serpin family B member 9 pseudogene 1	pseudo
58406	chr12	131909821	131910250	+	0	NA	intron (NM_003565, intron 10 of 27)	intron (NM_003565, intron 10 of 27)	15413	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
138733	chr2	213241401	213242000	+	0	NA	Intergenic	Intergenic	42509	NR_161186	100130451		NR_144752		SPAG16-DT	-	SPAG16 divergent transcript	ncRNA
217408	chr8	28365651	28366430	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	20420	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
133082	chr2	112436821	112437530	+	0	NA	Intergenic	Intergenic	-3530	NM_001164463	727851		NM_001164463	ENSG00000169629	RGPD8	RANBP2L1|RGP8|RanBP2alpha	RANBP2 like and GRIP domain containing 8	protein-coding
201734	chr6	149852221	149852880	+	0	NA	intron (NM_032832, intron 2 of 6)	intron (NM_032832, intron 2 of 6)	-10948	NR_045126	100652739		NR_045126	ENSG00000268592	RAET1E-AS1	RAET1G-AS1	RAET1E antisense RNA 1	ncRNA
212380	chr7	128020251	128020350	+	0	NA	intron (NM_014390, intron 16 of 23)	intron (NM_014390, intron 16 of 23)	11137	NM_022143	64101		NM_022143	ENSG00000128594	LRRC4	NAG14|NGL-2	leucine rich repeat containing 4	protein-coding
55423	chr12	104497001	104497930	+	0	NA	intron (NM_018413, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	40517	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
85063	chr16	32073671	32073830	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	114363	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
170562	chr3	186795151	186795650	+	0	NA	intron (NM_002916, intron 4 of 10)	L1ME4a|LINE|L1	7787	NR_002588	619568		NR_002588	ENSG00000263776	SNORA4	ACA4	small nucleolar RNA, H/ACA box 4	snoRNA
88111	chr16	81554771	81555130	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	21048	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
27523	chr10	32307921	32308780	+	0	NA	intron (NR_168508, intron 1 of 12)	AluSz|SINE|Alu	38808	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
236338	chrX	69618851	69619150	+	0	NA	intron (NM_001399, intron 1 of 7)	intron (NM_001399, intron 1 of 7)	2887	NM_001005613	1896		NM_001399	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED	ectodysplasin A	protein-coding
121248	chr19	46672651	46672950	+	0	NA	intron (NR_040042, intron 2 of 2)	AluJb|SINE|Alu	11322	NR_040041	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
35228	chr11	829581	831280	+	0	NA	intron (NM_173584, intron 5 of 7)	CpG-3790	2170	NM_173584	283229		NM_173584	ENSG00000177685	CRACR2B	EFCAB4A	calcium release activated channel regulator 2B	protein-coding
209622	chr7	77709051	77709380	+	0	NA	intron (NM_198467, intron 1 of 7)	(TGTGTG)n|Simple_repeat|Simple_repeat	-11870	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
117139	chr19	19299551	19299650	+	0	NA	intron (NM_172231, intron 7 of 13)	AluY|SINE|Alu	20909	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
134311	chr2	136007971	136009130	+	0	NA	Intergenic	Intergenic	-22866	NM_001293312	1615		NM_001349	ENSG00000115866	DARS1	DARS|HBSL|aspRS	aspartyl-tRNA synthetase 1	protein-coding
54163	chr12	76706171	76706330	+	0	NA	Intergenic	LTR16|LTR|ERVL	-57865	NM_015336	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
26889	chr10	26407471	26407730	+	0	NA	Intergenic	Intergenic	-30741	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
75418	chr15	65777621	65777880	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	14543	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
129273	chr2	68411201	68412200	+	0	NA	Intergenic	Intergenic	46418	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
98039	chr17	45429651	45430150	+	0	NA	exon (NM_001282290, exon 4 of 20)	exon (NM_001282290, exon 4 of 20)	2970	NM_174919	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
160378	chr3	27923501	27924050	+	0	NA	Intergenic	Intergenic	-89639	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
156785	chr22	41903951	41904380	+	0	NA	intron (NR_103834, intron 20 of 21)	AluJr|SINE|Alu	3221	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
201633	chr6	149455021	149455500	+	0	NA	intron (NM_207360, intron 4 of 5)	intron (NM_207360, intron 4 of 5)	29754	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
21057	chr1	203282751	203283050	+	0	NA	Intergenic	Intergenic	-4252	NR_117097	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
138634	chr2	210181251	210181780	+	0	NA	Intergenic	L1PA7|LINE|L1	-10106	NM_152519	151050		NM_152519	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1 like	protein-coding
103987	chr17	80031801	80032150	+	0	NA	intron (NM_019020, intron 1 of 11)	intron (NM_019020, intron 1 of 11)	3897	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
233989	chrX	2819571	2819730	+	0	NA	Intergenic	Charlie17|DNA|hAT-Charlie	-9172	NM_001184702	8908		NM_003918	ENSG00000056998	GYG2	GN-2|GN2	glycogenin 2	protein-coding
200811	chr6	137910121	137910580	+	0	NA	Intergenic	Intergenic	35450	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
137422	chr2	196337021	196337600	+	0	NA	intron (NM_001348768, intron 3 of 28)	intron (NM_001348768, intron 3 of 28)	24867	NM_001304840	57520		NM_020760	ENSG00000138411	HECW2	NDHSAL|NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
146134	chr20	48637451	48637750	+	0	NA	intron (NM_020820, intron 31 of 39)	intron (NM_020820, intron 31 of 39)	190399	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
88818	chr16	87409251	87409750	+	0	NA	3' UTR (NM_015144, exon 13 of 13)	3' UTR (NM_015144, exon 13 of 13)	17164	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
32482	chr10	102669421	102670150	+	0	NA	Intergenic	Intergenic	25290	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
90070	chr16	89994401	89997050	+	0	NA	non-coding (NR_003226, exon 11 of 11)	non-coding (NR_003226, exon 11 of 11)	13279	NM_001371581	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
212234	chr7	121328621	121329080	+	0	NA	promoter-TSS (NM_057168)	promoter-TSS (NM_057168)	-150	NM_057168	51384		NM_016087	ENSG00000002745	WNT16	-	Wnt family member 16	protein-coding
226629	chr9	73181471	73182230	+	0	NA	Intergenic	Intergenic	29985	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
200536	chr6	136254571	136255430	+	0	NA	Intergenic	Intergenic	-4689	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
189109	chr5	170334821	170335430	+	0	NA	TTS (NR_026945)	TTS (NR_026945)	3732	NR_108024	257358		NM_001025454	ENSG00000235172	LINC01366	-	long intergenic non-protein coding RNA 1366	ncRNA
194882	chr6	34664321	34665300	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-31344	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
235894	chrX	52932701	52932900	+	0	NA	Intergenic	Intergenic	23955	NM_001099684	727866		NM_001099684	ENSG00000179304	FAM156B	TMEM29B	family with sequence similarity 156 member B	protein-coding
126743	chr2	30222701	30222900	+	0	NA	Intergenic	Intergenic	-8734	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
220178	chr8	95162201	95162680	+	0	NA	Intergenic	Intergenic	28655	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
93213	chr17	17828671	17828830	+	0	NA	intron (NM_001005291, intron 1 of 19)	AluJr|SINE|Alu	-5120	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
129540	chr2	69756101	69756350	+	0	NA	intron (NM_001320702, intron 1 of 12)	intron (NM_001320702, intron 1 of 12)	14091	NM_001320700	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
216191	chr8	11840651	11841550	+	0	NA	Intergenic	MER53|DNA|hAT	26987	NM_001384727	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
56824	chr12	120223271	120224030	+	0	NA	intron (NM_001080855, intron 3 of 11)	intron (NM_001080855, intron 3 of 11)	22359	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
47848	chr12	6615451	6616150	+	0	NA	Intergenic	Intergenic	-8421	NM_001273	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
114664	chr19	13060101	13060500	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	35521	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
15336	chr1	149917501	149918150	+	0	NA	promoter-TSS (NM_001328674)	promoter-TSS (NM_001328674)	19	NM_001328674	9900		NM_014849	ENSG00000159164	SV2A	DEE113|SLC22B1|SV2	synaptic vesicle glycoprotein 2A	protein-coding
131186	chr2	94874151	94874650	+	0	NA	intron (NM_144705, intron 3 of 5)	intron (NM_144705, intron 3 of 5)	2970	NM_001286559	150483		NM_144705	ENSG00000163060	TEKT4	-	tektin 4	protein-coding
127153	chr2	37877451	37878050	+	0	NA	Intergenic	Intergenic	-1887	NR_110012	101929559		NR_110011	ENSG00000237803	PIRAT1	LINC00211|NCRNA00211|PIRAT	PU.1 (SPI1) induced regulator of S100A8 and S100A9 alarmin transcription 1	ncRNA
160901	chr3	33806951	33807250	+	0	NA	intron (NM_001256192, intron 1 of 5)	intron (NM_001256192, intron 1 of 5)	8470	NM_013374	10015		NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95|MCPH29	programmed cell death 6 interacting protein	protein-coding
234000	chrX	3426851	3426950	+	0	NA	Intergenic	(ATG)n|Simple_repeat|Simple_repeat	-80248	NM_015419	25878		NM_015419	ENSG00000101825	MXRA5	-	matrix remodeling associated 5	protein-coding
154138	chr22	31243821	31244080	+	0	NA	intron (NM_005569, intron 2 of 15)	intron (NM_005569, intron 2 of 15)	-4434	NM_016733	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
231680	chr9	131694021	131694680	+	0	NA	intron (NM_001377935, intron 1 of 26)	MER105|DNA|hAT-Charlie	15492	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
142291	chr20	3241501	3241900	+	0	NA	Intergenic	AluJb|SINE|Alu	-2510	NR_135000	83959		NM_032034	ENSG00000088836	SLC4A11	BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2	solute carrier family 4 member 11	protein-coding
36107	chr11	3056121	3056580	+	0	NA	intron (NM_001378136, intron 1 of 22).2	intron (NM_001378136, intron 1 of 22).2	1073	NM_001751	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
66238	chr14	61339871	61340130	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	18557	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
102494	chr17	75755351	75756330	+	0	NA	exon (NM_001005731, exon 34 of 39)	exon (NM_001005731, exon 34 of 39)	9352	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
47141	chr12	749821	750380	+	0	NA	Intergenic	Intergenic	-2479	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
152290	chr22	20314971	20315130	+	0	NA	intron (NM_033257, intron 4 of 4)	intron (NM_033257, intron 4 of 4)	5010	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
112210	chr19	5694851	5695300	+	0	NA	intron (NR_076392, intron 14 of 18)	L2b|LINE|L2	4780	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
124961	chr2	8679901	8680450	+	0	NA	non-coding (NR_110153, exon 2 of 2)	non-coding (NR_110153, exon 2 of 2)	1686	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
67592	chr14	72417121	72417200	+	0	NA	intron (NM_001370288, intron 3 of 16)	intron (NM_001370288, intron 3 of 16)	-99660	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
45735	chr11	119114821	119115080	+	0	NA	intron (NM_001382611, intron 12 of 12)	AluJb|SINE|Alu	-6573	NM_001243259	25988		NM_015517	ENSG00000172273	HINFP	HiNF-P|MIZF|ZNF743	histone H4 transcription factor	protein-coding
160651	chr3	31576501	31576700	+	0	NA	intron (NM_178862, intron 2 of 15)	intron (NM_178862, intron 2 of 15)	43675	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
186585	chr5	138501201	138502000	+	0	NA	Intergenic	Intergenic	36121	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
196046	chr6	42052221	42052480	+	0	NA	intron (NM_138572, intron 2 of 8)	AluSx|SINE|Alu	1826	NM_138572	129685		NM_138572	ENSG00000137413	TAF8	II|NEDMLHB|TAF|TAF(II)43|TAFII-43|TAFII43|TBN	TATA-box binding protein associated factor 8	protein-coding
238610	chrX	153936171	153936330	+	0	NA	intron (NM_002910, intron 9 of 10)	AluY|SINE|Alu	-1213	NM_003491	8260		NM_003491	ENSG00000102030	NAA10	ARD1|ARD1A|ARD1P|DXS707|LZMS|MAA|MCOPS1|NATD|OGDNS|TE2|hARD1	N-alpha-acetyltransferase 10, NatA catalytic subunit	protein-coding
66989	chr14	67067521	67067780	+	0	NA	intron (NM_020806, intron 11 of 22)	L1P2|LINE|L1	-121790	NM_173526	161142		NM_173526	ENSG00000172717	GARIN2	C14orf54|FAM71D|GARI-L1|GARI-L2	golgi associated RAB2 interactor family member 2	protein-coding
231569	chr9	131497601	131498100	+	0	NA	3' UTR (NM_001384822, exon 31 of 31)	3' UTR (NM_001384822, exon 31 of 31)	-5068	NM_001374695	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
101567	chr17	68042351	68043850	+	0	NA	exon (NM_001320611, exon 7 of 11)	exon (NM_001320611, exon 7 of 11)	7140	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
138116	chr2	202285971	202286500	+	0	NA	intron (NM_015934, intron 5 of 14)	AluY|SINE|Alu	-5082	NR_003694	100113392		NR_003694	ENSG00000271852	SNORD11B	-	small nucleolar RNA, C/D box 11B	snoRNA
146616	chr20	50155971	50156130	+	0	NA	Intergenic	L2a|LINE|L2	-2252	NR_027889	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
16563	chr1	154973591	154976500	+	0	NA	promoter-TSS (NR_036212)	promoter-TSS (NR_036212)	364	NM_001826	1163		NM_001826	ENSG00000173207	CKS1B	CKS1|PNAS-16|PNAS-18|ckshs1	CDC28 protein kinase regulatory subunit 1B	protein-coding
85609	chr16	53742771	53743350	+	0	NA	intron (NM_001363897, intron 1 of 7)	intron (NM_001363897, intron 1 of 7)	38904	NM_001080432	79068		NM_001080432	ENSG00000140718	FTO	ALKBH9|BMIQ14|GDFD|IFEX9	FTO alpha-ketoglutarate dependent dioxygenase	protein-coding
81601	chr16	10497071	10497430	+	0	NA	Intergenic	MER54A|LTR|ERVL	30948	NR_149081	106144584		NR_149081	ENSG00000260468	LINC01290	-	long intergenic non-protein coding RNA 1290	ncRNA
167952	chr3	136484551	136484850	+	0	NA	intron (NM_005862, intron 9 of 33)	L1HS|LINE|L1	234360	NM_000532	5096		NM_000532	ENSG00000114054	PCCB	-	propionyl-CoA carboxylase subunit beta	protein-coding
58355	chr12	131624221	131625400	+	0	NA	Intergenic	Intergenic	23311	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
234281	chrX	13615171	13615330	+	0	NA	intron (NM_015507, intron 7 of 11)	intron (NM_015507, intron 7 of 11)	24958	NR_106734	102466519		NR_106734	ENSG00000283493	MIR6086	hsa-mir-6086	microRNA 6086	ncRNA
108780	chr18	77210371	77211180	+	0	NA	Intergenic	Intergenic	-39073	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
159834	chr3	16494871	16495180	+	0	NA	intron (NM_015150, intron 1 of 9)	intron (NM_015150, intron 1 of 9)	18674	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
172479	chr4	2135021	2135480	+	0	NA	intron (NM_181808, intron 16 of 25)	intron (NM_181808, intron 16 of 25)	75923	NM_178557	339983		NM_178557	ENSG00000185818	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8 like	protein-coding
144413	chr20	35303471	35304450	+	0	NA	exon (NM_001184977, exon 8 of 8)	exon (NM_001184977, exon 8 of 8)	-11535	NM_178468	128876		NM_178468	ENSG00000125998	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83 member C	protein-coding
24534	chr1	244845301	244845880	+	0	NA	TTS (NM_001312871)	TTS (NM_001312871)	8627	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
9584	chr1	52032151	52032450	+	0	NA	non-coding (NR_046405, exon 3 of 3)	non-coding (NR_046405, exon 3 of 3)	1510	NM_138417	112970		NM_138417	ENSG00000198841	KTI12	SBBI81|TOT4	KTI12 chromatin associated homolog	protein-coding
145015	chr20	37901571	37901930	+	0	NA	Intergenic	Intergenic	-1377	NM_080607	128434		NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
114763	chr19	13685571	13685730	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-46102	NM_001320566	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
195645	chr6	37866421	37867080	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	47023	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
126644	chr2	28892671	28893280	+	0	NA	Intergenic	Intergenic	-1692	NM_015131	23160		NM_015131	ENSG00000163811	WDR43	NET12|UTP5	WD repeat domain 43	protein-coding
52114	chr12	54194201	54194400	+	0	NA	Intergenic	MIR|SINE|MIR	-5306	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
101710	chr17	68511451	68513630	+	0	NA	promoter-TSS (NM_001369390)	promoter-TSS (NM_001369390)	110	NM_002734	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
167602	chr3	129570201	129570800	+	0	NA	intron (NM_015103, intron 19 of 35)	intron (NM_015103, intron 19 of 35)	22115	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
48313	chr12	9002451	9003030	+	0	NA	intron (NM_005810, intron 3 of 4)	AluJb|SINE|Alu	13115	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
72784	chr15	39935501	39935700	+	0	NA	intron (NM_001013703, intron 1 of 38)	AluJo|SINE|Alu	1485	NM_001013703	440275		NM_001013703	ENSG00000128829	EIF2AK4	GCN2|PVOD2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding
205595	chr7	21691351	21691450	+	0	NA	intron (NM_001277115, intron 35 of 81)	intron (NM_001277115, intron 35 of 81)	148361	NM_001277115	8701		NM_001277115	ENSG00000105877	DNAH11	CILD7|DNAHBL|DNAHC11|DNHBL|DPL11	dynein axonemal heavy chain 11	protein-coding
175877	chr4	80036671	80037430	+	0	NA	intron (NM_001145794, intron 7 of 15)	intron (NM_001145794, intron 7 of 15)	36179	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
124855	chr2	7978101	7978500	+	0	NA	Intergenic	Intergenic	-1486	NR_015405	339788		NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
73570	chr15	44430821	44431380	+	0	NA	intron (NM_016396, intron 1 of 12)	AluSp|SINE|Alu	3471	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
67261	chr14	69129121	69130300	+	0	NA	intron (NM_001284208, intron 1 of 6)	intron (NM_001284208, intron 1 of 6)	22889	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
116941	chr19	18846821	18847550	+	0	NA	intron (NM_001297549, intron 2 of 23)	intron (NM_001297549, intron 2 of 23)	15226	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
233548	chrX	255101	255300	+	0	NA	Intergenic	CpG	-21156	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228348	chr9	99013601	99014300	+	0	NA	intron (NM_001855, intron 9 of 41)	intron (NM_001855, intron 9 of 41)	70043	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
159007	chr3	10417771	10418100	+	0	NA	intron (NM_001353564, intron 3 of 20)	intron (NM_001353564, intron 3 of 20)	-23373	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
90463	chr17	1382421	1382680	+	0	NA	intron (NR_024058, intron 1 of 6)	AluY|SINE|Alu	17672	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
184272	chr5	96743471	96743830	+	0	NA	promoter-TSS (NR_104285)	promoter-TSS (NR_104285)	48	NR_104285	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
148796	chr21	8235801	8236800	+	0	NA	intron (NR_003287, intron 1 of 2)	intron (NR_003287, intron 1 of 2)	-13205	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
38183	chr11	36362851	36362950	+	0	NA	intron (NM_001160167, intron 1 of 8)	intron (NM_001160167, intron 1 of 8)	-13085	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
158466	chr22	50676321	50676580	+	0	NA	intron (NM_001372044, intron 4 of 23)	intron (NM_001372044, intron 4 of 23)	3627	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
220062	chr8	93906151	93906450	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	9819	NR_039602	100616169		NR_039602	ENSG00000284288	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
3161	chr1	12613201	12613600	+	0	NA	intron (NM_004753, intron 1 of 5)	intron (NM_004753, intron 1 of 5)	3389	NM_001319225	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
196373	chr6	43249371	43249530	+	0	NA	intron (NM_032538, intron 2 of 14)	ORSL|DNA|hAT-Tip100	5969	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
236790	chrX	79143021	79143280	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1538	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
102006	chr17	74775901	74777200	+	0	NA	promoter-TSS (NR_130954)	promoter-TSS (NR_130954)	51	NM_017728	54868		NM_017728	ENSG00000109066	TMEM104	SLC38A12	transmembrane protein 104	protein-coding
175371	chr4	70624201	70625250	+	0	NA	Intergenic	Intergenic	-4019	NM_031889	10117		NM_031889	ENSG00000132464	ENAM	ADAI|AI1C|AIH2	enamelin	protein-coding
117267	chr19	19458871	19459500	+	0	NA	intron (NM_001384522, intron 3 of 13)	L1ME4a|LINE|L1	24122	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
10675	chr1	71061521	71062330	+	0	NA	intron (NR_038420, intron 2 of 2)	L1MD3|LINE|L1	5791	NR_029707	406962		NR_029707	ENSG00000207721	MIR186	MIRN186|miR-186	microRNA 186	ncRNA
236461	chrX	71577221	71577480	+	0	NA	promoter-TSS (NM_052957)	promoter-TSS (NM_052957)	-674	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
230289	chr9	127941871	127942050	+	0	NA	3' UTR (NM_001035254, exon 11 of 11)	3' UTR (NM_001035254, exon 11 of 11)	-4106	NM_001378436	8818		NM_003863	ENSG00000136908	DPM2	CDG1U	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein-coding
100287	chr17	59706471	59708400	+	0	NA	promoter-TSS (NM_016077)	promoter-TSS (NM_016077)	-5	NM_016077	51651		NM_016077	ENSG00000141378	PTRH2	BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2	peptidyl-tRNA hydrolase 2	protein-coding
146962	chr20	52422621	52423080	+	0	NA	Intergenic	L1MA1|LINE|L1	-197988	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
71143	chr14	104985321	104986750	+	0	NA	promoter-TSS (NM_001364170)	promoter-TSS (NM_001364170)	-244	NM_001364170	122616		NM_174891	ENSG00000140104	CLBA1	C14orf79	clathrin binding box of aftiphilin containing 1	protein-coding
10714	chr1	75727601	75727800	+	0	NA	intron (NM_001286044, intron 1 of 8)	MER58B|DNA|hAT-Charlie	2991	NM_000016	34		NM_000016	ENSG00000117054	ACADM	ACAD1|MCAD|MCADH	acyl-CoA dehydrogenase medium chain	protein-coding
185116	chr5	119282121	119283180	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	13891	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
193384	chr6	30350421	30350800	+	0	NA	Intergenic	L1MB4|LINE|L1	5454	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
207898	chr7	50416901	50417100	+	0	NA	Intergenic	Intergenic	33350	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
52535	chr12	56120621	56121200	+	0	NA	exon (NM_001303125, exon 3 of 3)	exon (NM_001303125, exon 3 of 3)	2493	NM_001303125	84872		NM_032786	ENSG00000135482	ZC3H10	ZC3HDC10	zinc finger CCCH-type containing 10	protein-coding
217064	chr8	23447551	23447650	+	0	NA	intron (NM_004901, intron 4 of 12)	intron (NM_004901, intron 4 of 12)	10047	NM_004901	9583		NM_004901	ENSG00000197217	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
200084	chr6	130164551	130164650	+	0	NA	intron (NM_001258275, intron 10 of 13)	intron (NM_001258275, intron 10 of 13)	51285	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
20799	chr1	201152871	201153030	+	0	NA	intron (NM_016456, intron 2 of 5)	Tigger4|DNA|TcMar-Tigger	1524	NM_001288565	252839		NM_016456	ENSG00000116857	TMEM9	DERM4|TMEM9A	transmembrane protein 9	protein-coding
120969	chr19	45712221	45712950	+	0	NA	exon (NM_001080469, exon 2 of 2)	exon (NM_001080469, exon 2 of 2)	2693	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
85470	chr16	50682821	50683080	+	0	NA	Intergenic	AluJr|SINE|Alu	-1638	NM_001144972	124460		NM_153337	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
223705	chr8	144443621	144445080	+	0	NA	promoter-TSS (NM_013432)	promoter-TSS (NM_013432)	90	NM_013432	4796		NM_013432	ENSG00000160949	TONSL	IKBR|NFKBIL2|SEMDSP	tonsoku like, DNA repair protein	protein-coding
155533	chr22	38703671	38704030	+	0	NA	Intergenic	AluSp|SINE|Alu	-2094	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
237106	chrX	104166151	104167230	+	0	NA	5' UTR (NM_207318, exon 1 of 6)	5' UTR (NM_207318, exon 1 of 6)	237	NM_207318	139231		NM_207318	ENSG00000123575	FAM199X	CXorf39	family with sequence similarity 199, X-linked	protein-coding
70839	chr14	103664701	103664900	+	0	NA	intron (NM_001130107, intron 5 of 15)	AluJo|SINE|Alu	35612	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
69736	chr14	98704271	98704850	+	0	NA	Intergenic	Intergenic	-7053	NR_161367	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
137600	chr2	197288971	197289130	+	0	NA	intron (NR_046837, intron 5 of 5)	L1MA4A|LINE|L1	13469	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
164659	chr3	66822101	66822500	+	0	NA	Intergenic	Intergenic	-83964	NR_135533	105377143		NR_135533		LOC105377143	-	uncharacterized LOC105377143	ncRNA
51503	chr12	52139571	52140000	+	0	NA	Intergenic	Intergenic	46216	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
194750	chr6	33903171	33903530	+	0	NA	Intergenic	Intergenic	4215	NR_106982	102466816		NR_106982	ENSG00000276824	MIR7159	hsa-mir-7159	microRNA 7159	ncRNA
149287	chr21	28604971	28605580	+	0	NA	Intergenic	Intergenic	65957	NR_026552	118421		NR_026552	ENSG00000226935	LINC00161	C21orf100|Linc-USP16|NCRNA00161	long intergenic non-protein coding RNA 161	ncRNA
130013	chr2	74176471	74177480	+	0	NA	intron (NM_001317112, intron 1 of 4)	L1M4|LINE|L1	1339	NM_001317111	55233		NM_018221	ENSG00000114978	MOB1A	C2orf6|MABKL1B|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B	MOB kinase activator 1A	protein-coding
209400	chr7	76326121	76326530	+	0	NA	TTS (NM_012479)	TTS (NM_012479)	23652	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
53059	chr12	57632601	57633730	+	0	NA	promoter-TSS (NM_001276469)	promoter-TSS (NM_001276469)	36	NM_001478	2583		NM_001478	ENSG00000135454	B4GALNT1	GALGT|GALNACT|GalNAc-T|SPG26	beta-1,4-N-acetyl-galactosaminyltransferase 1	protein-coding
36309	chr11	3852551	3853250	+	0	NA	Intergenic	L1MB2|LINE|L1	-1704	NM_001382581	6786		NM_003156	ENSG00000167323	STIM1	D11S4896E|GOK|IMD10|STRMK|TAM|TAM1	stromal interaction molecule 1	protein-coding
41067	chr11	65498401	65499480	+	0	NA	TTS (NR_145459)	TTS (NR_145459)	1202	NR_144568	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
24115	chr1	235645901	235646400	+	0	NA	intron (NM_001098721, intron 1 of 3)	intron (NM_001098721, intron 1 of 3)	3634	NM_001098722	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
78870	chr15	100571171	100571950	+	0	NA	intron (NR_148017, intron 6 of 6)	intron (NR_148017, intron 6 of 6)	-12277	NR_073405	441733		NR_073405		PRKXP1	-	PRKX pseudogene 1	pseudo
38728	chr11	46718201	46718450	+	0	NA	promoter-TSS (NM_000506)	promoter-TSS (NM_000506)	-888	NM_000506	2147		NM_000506	ENSG00000180210	F2	PT|RPRGL2|THPH1	coagulation factor II, thrombin	protein-coding
210507	chr7	100189871	100190350	+	0	NA	intron (NM_012447, intron 8 of 33)	MIRb|SINE|MIR	12192	NM_001282718	10734		NM_012447	ENSG00000066923	STAG3	SA3|SPGF61	STAG3 cohesin complex component	protein-coding
123137	chr19	52048221	52049700	+	0	NA	promoter-TSS (NM_014650)	promoter-TSS (NM_014650)	-122	NM_014650	9668		NM_014650	ENSG00000256087	ZNF432	-	zinc finger protein 432	protein-coding
23204	chr1	227543901	227544100	+	0	NA	Intergenic	Intergenic	-19556	NM_001367909	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
193230	chr6	29891351	29891780	+	0	NA	TTS (NR_001434).4	TTS (NR_001434).4	3992	NR_001434	3136		NR_001434		HLA-H	HLAHP	major histocompatibility complex, class I, H (pseudogene)	pseudo
132315	chr2	105329201	105330680	+	0	NA	promoter-TSS (NM_004257)	promoter-TSS (NM_004257)	-205	NM_001142621	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
164909	chr3	71132951	71133450	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	-1003	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
137950	chr2	201132301	201132930	+	0	NA	promoter-TSS (NM_001202518)	promoter-TSS (NM_001202518)	-166	NM_001202518	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
122965	chr19	50784771	50785450	+	0	NA	TTS (NM_001384597)	TTS (NM_001384597)	1050	NM_001384597	105372440		NM_001384597	ENSG00000261341	SMIM47	-	small integral membrane protein 47	protein-coding
163080	chr3	50084371	50085030	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-4219	NR_036627	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
134817	chr2	148530101	148530700	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-114351	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
33530	chr10	119233571	119234000	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	26214	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
204819	chr7	5687371	5687730	+	0	NA	intron (NM_207111, intron 13 of 16)	L3|LINE|CR1	-7089	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
207866	chr7	50368351	50368750	+	0	NA	3' UTR (NM_001291845, exon 4 of 4)	3' UTR (NM_001291845, exon 4 of 4)	49502	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
210886	chr7	101167601	101167930	+	0	NA	Intergenic	(TGCATG)n|Simple_repeat|Simple_repeat	-2196	NM_003378	7425		NM_003378	ENSG00000128564	VGF	SCG7|SgVII	VGF nerve growth factor inducible	protein-coding
30661	chr10	80484731	80485530	+	0	NA	intron (NM_001351272, intron 2 of 9)	intron (NM_001351272, intron 2 of 9)	16889	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
187290	chr5	141589801	141590000	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	29100	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
3810	chr1	16754001	16754200	+	0	NA	TTS (NM_001271733)	TTS (NM_001271733)	10380	NM_001271733	11223		NM_001271733	ENSG00000186715	MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P|MST1P7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1 like (pseudogene)	pseudo
50636	chr12	48713471	48714130	+	0	NA	intron (NM_001240, intron 2 of 8)	intron (NM_001240, intron 2 of 8)	2907	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
89402	chr16	88821251	88821550	+	0	NA	intron (NM_000512, intron 12 of 13)	intron (NM_000512, intron 12 of 13)	-9472	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
48235	chr12	8238371	8238530	+	0	NA	intron (NR_120454, intron 1 of 2)	LTR33A|LTR|ERVL	3035	NR_120454	101927905		NR_120454	ENSG00000215241	LINC02449	-	long intergenic non-protein coding RNA 2449	ncRNA
75850	chr15	69523401	69523680	+	0	NA	Intergenic	Intergenic	-38180	NR_026979	145837		NR_026979	ENSG00000245750	DRAIC	-	downregulated RNA in cancer, inhibitor of cell invasion and migration	ncRNA
88450	chr16	84951071	84951500	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	60250	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
79996	chr16	1863501	1864100	+	0	NA	intron (NM_001163560, intron 3 of 13)	intron (NM_001163560, intron 3 of 13)	8364	NM_152764	254528		NM_152764	ENSG00000162039	MEIOB	C16orf73|POF23|SPGF22|gs129	meiosis specific with OB-fold	protein-coding
172446	chr4	1964401	1964600	+	0	NA	intron (NM_133330, intron 20 of 23)	L1M4c|LINE|L1	-10136	NR_003004	677770		NR_003004	ENSG00000249784	SCARNA22	ACA11	small Cajal body-specific RNA 22	ncRNA
144295	chr20	34708531	34710430	+	0	NA	exon (NM_021202, exon 4 of 5)	exon (NM_021202, exon 4 of 5)	4761	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
177832	chr4	126928571	126928830	+	0	NA	Intergenic	L1PA2|LINE|L1	-704257	NM_015693	27152		NM_015693	ENSG00000164066	INTU	CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20	inturned planar cell polarity protein	protein-coding
57287	chr12	121641771	121641930	+	0	NA	3' UTR (NM_032790, exon 3 of 3)	3' UTR (NM_032790, exon 3 of 3)	15300	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
62471	chr13	99373671	99374030	+	0	NA	intron (NR_026644, intron 8 of 8)	intron (NR_026644, intron 8 of 8)	17719	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
44491	chr11	105101151	105101630	+	0	NA	promoter-TSS (NM_001007232)	promoter-TSS (NM_001007232)	41	NM_001007232	440068		NM_001007232		CARD17P	CARD17|INCA	caspase recruitment domain family member 17, pseudogene	pseudo
130319	chr2	84971801	84972500	+	0	NA	intron (NM_020122, intron 1 of 6)	CpG	989	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
200317	chr6	133707451	133707750	+	0	NA	intron (NR_109982, intron 4 of 8)	LTR33B|LTR|ERVL	-113547	NR_027030	154089		NM_153224		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
44805	chr11	113841271	113842030	+	0	NA	intron (NM_020886, intron 4 of 24)	intron (NM_020886, intron 4 of 24)	33922	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
185733	chr5	132075251	132075730	+	0	NA	intron (NM_000758, intron 3 of 3)	intron (NM_000758, intron 3 of 3)	1701	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
10222	chr1	62687621	62688700	+	0	NA	intron (NM_033407, intron 1 of 48)	CpG	208	NM_033407	85440		NM_033407	ENSG00000116641	DOCK7	DEE23|EIEE23|ZIR2	dedicator of cytokinesis 7	protein-coding
193017	chr6	28335101	28337650	+	0	NA	promoter-TSS (NM_001243242)	promoter-TSS (NM_001243242)	0	NM_001243242	64288		NM_030899	ENSG00000235109	ZSCAN31	ZNF20-Lp|ZNF310P|ZNF323	zinc finger and SCAN domain containing 31	protein-coding
196079	chr6	42284101	42284650	+	0	NA	intron (NM_033502, intron 4 of 17)	Tigger13a|DNA|TcMar-Tigger	-66514	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
175658	chr4	76897901	76898580	+	0	NA	promoter-TSS (NM_001029870)	promoter-TSS (NM_001029870)	-96	NM_001029870	345079		NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
171913	chr4	833901	834330	+	0	NA	Intergenic	Intergenic	-7986	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
143647	chr20	31862651	31863100	+	0	NA	intron (NM_001012644, intron 5 of 6)	L2b|LINE|L2	7356	NM_177991	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
167420	chr3	129017121	129017950	+	0	NA	intron (NM_024768, intron 2 of 7)	MLT1E2|LTR|ERVL-MaLR	-13533	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
112804	chr19	7495371	7495930	+	0	NA	Intergenic	AluJr|SINE|Alu	-1898	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
122851	chr19	50476011	50477100	+	0	NA	promoter-TSS (NM_175063)	promoter-TSS (NM_175063)	48	NM_175063	284361		NM_175063	ENSG00000161671	EMC10	C19orf63|HSM1|HSS1|NEDDFAS	ER membrane protein complex subunit 10	protein-coding
199727	chr6	125752201	125752400	+	0	NA	intron (NM_012259, intron 3 of 4)	intron (NM_012259, intron 3 of 4)	2668	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
108852	chr18	79245301	79246980	+	0	NA	intron (NM_198531, intron 11 of 29)	intron (NM_198531, intron 11 of 29)	-149790	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
5158	chr1	24919601	24919800	+	0	NA	promoter-TSS (NR_106789)	promoter-TSS (NR_106789)	-284	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
148768	chr21	8198371	8198680	+	0	NA	intron (NR_038958, intron 1 of 6)	AluJb|SINE|Alu	905	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
171282	chr3	195894421	195895500	+	0	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	388	NM_001010938	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
111615	chr19	4113301	4113680	+	0	NA	intron (NM_030662, intron 2 of 10)	MIRb|SINE|MIR	10632	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
151695	chr22	17258051	17258750	+	0	NA	intron (NR_038398, intron 2 of 2)	intron (NR_038398, intron 2 of 2)	8333	NR_038398	27442		NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3	ncRNA
163201	chr3	50230371	50230730	+	0	NA	promoter-TSS (NM_001282617)	promoter-TSS (NM_001282617)	-226	NM_001282617	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
83382	chr16	26594851	26595550	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-471727	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
158498	chr3	2856171	2856730	+	0	NA	intron (NM_175607, intron 7 of 24)	intron (NM_175607, intron 7 of 24)	-35765	NM_175613	152330		NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
118418	chr19	35776621	35777180	+	0	NA	intron (NM_001172630, intron 1 of 20)	L2c|LINE|L2	1336	NM_001366178	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
185634	chr5	131526171	131527180	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	108554	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
82707	chr16	20805451	20805550	+	0	NA	intron (NM_080663, intron 1 of 10)	LTR10C|LTR|ERV1	972	NM_080663	112479		NM_080663	ENSG00000196678	ERI2	EXOD1|ZGRF5	ERI1 exoribonuclease family member 2	protein-coding
178983	chr4	163168351	163168450	+	0	NA	Intergenic	Intergenic	-1510	NM_138386	92345		NM_138386	ENSG00000145414	NAF1	PFBMFT7	nuclear assembly factor 1 ribonucleoprotein	protein-coding
232285	chr9	134442821	134444130	+	0	NA	Intergenic	Intergenic	36915	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
83518	chr16	27455471	27456200	+	0	NA	Intergenic	HAL1|LINE|L1	-2442	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
175908	chr4	80181171	80181580	+	0	NA	Intergenic	Intergenic	-3895	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
64644	chr14	31326171	31326330	+	0	NA	exon (NM_015473, exon 23 of 36)	exon (NM_015473, exon 23 of 36)	94300	NM_015473	25938		NM_015473	ENSG00000129493	HEATR5A	C14orf125|p200b	HEAT repeat containing 5A	protein-coding
17580	chr1	156846551	156847130	+	0	NA	intron (NM_014215, intron 7 of 21)	intron (NM_014215, intron 7 of 21)	12277	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
178212	chr4	142566811	142567600	+	0	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	-6450	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
118685	chr19	38003351	38003750	+	0	NA	intron (NM_015073, intron 1 of 21)	intron (NM_015073, intron 1 of 21)	96342	NM_015073	23094		NM_015073	ENSG00000105738	SIPA1L3	CTRCT45|SPAL3|SPAR3	signal induced proliferation associated 1 like 3	protein-coding
111488	chr19	3963121	3963800	+	0	NA	intron (NM_001348, intron 6 of 8)	intron (NM_001348, intron 6 of 8)	-1948	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
12576	chr1	108750751	108751080	+	0	NA	intron (NM_007269, intron 1 of 18)	MER21C|LTR|ERVL	4241	NM_007269	6814		NM_007269	ENSG00000116266	STXBP3	MUNC18-3|MUNC18C|PSP|UNC-18C	syntaxin binding protein 3	protein-coding
92855	chr17	16311071	16311780	+	0	NA	intron (NM_004278, intron 3 of 6)	MIR|SINE|MIR	29411	NR_031698	100302124		NR_031698	ENSG00000221355	MIR1288	MIRN1288|hsa-mir-1288	microRNA 1288	ncRNA
93335	chr17	18199951	18200250	+	0	NA	intron (NM_017758, intron 2 of 3)	AluSx1|SINE|Alu	16272	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
11172	chr1	87286971	87287330	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-41730	NM_006769	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
228367	chr9	99099551	99100230	+	0	NA	Intergenic	L1MEd|LINE|L1	-5223	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233567	chrX	287871	288480	+	0	NA	intron (NR_163416, intron 2 of 7)	MLT1C|LTR|ERVL-MaLR	4697	NM_001370373	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
103569	chr17	78682401	78683150	+	0	NA	intron (NM_017456, intron 10 of 12)	HAL1|LINE|L1	34257	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
9707	chr1	53106451	53106950	+	0	NA	intron (NM_001287597, intron 2 of 9)	L1M5|LINE|L1	35938	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
13797	chr1	117388351	117388750	+	0	NA	intron (NM_006699, intron 1 of 12)	MSTA|LTR|ERVL-MaLR	21101	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
137878	chr2	200839801	200840400	+	0	NA	Intergenic	L1M1|LINE|L1	24461	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
141676	chr2	241801071	241801230	+	0	NA	intron (NM_022134, intron 2 of 3)	L1PA8|LINE|L1	-8043	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
205826	chr7	24794821	24795080	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-37011	NM_004403	1687		NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
61210	chr13	49499951	49500950	+	0	NA	intron (NR_135323, intron 2 of 11)	intron (NR_135323, intron 2 of 11)	3394	NM_001040444	51131		NM_001040443	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
47647	chr12	6280521	6280780	+	0	NA	Intergenic	L2b|LINE|L2	-29682	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
19477	chr1	174989751	174990780	+	0	NA	non-coding (NR_158982, exon 27 of 27)	non-coding (NR_158982, exon 27 of 27)	-9170	NM_001007214	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
95804	chr17	38731851	38732350	+	0	NA	intron (NM_001136498, intron 3 of 3)	intron (NM_001136498, intron 3 of 3)	1759	NM_001136498	284106		NM_001136498	ENSG00000277972	CISD3	MiNT|Miner2	CDGSH iron sulfur domain 3	protein-coding
140573	chr2	233332971	233333130	+	0	NA	intron (NM_000541, intron 10 of 15)	AluSx1|SINE|Alu	-21444	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
170284	chr3	184320121	184320880	+	0	NA	5' UTR (NM_004953, exon 1 of 26)	5' UTR (NM_004953, exon 1 of 26)	237	NM_004953	1981		NM_004953	ENSG00000114867	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma 1	protein-coding
73099	chr15	40956701	40957230	+	0	NA	TTS (NM_024111)	TTS (NM_024111)	3494	NM_024111	79094		NM_024111	ENSG00000128965	CHAC1	-	ChaC glutathione specific gamma-glutamylcyclotransferase 1	protein-coding
230853	chr9	129112851	129112950	+	0	NA	intron (NM_001193397, intron 1 of 9)	AluSp|SINE|Alu	1212	NM_001193397	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
9648	chr1	52604671	52605730	+	0	NA	intron (NM_015696, intron 1 of 2)	intron (NM_015696, intron 1 of 2)	2829	NM_015696	2882		NM_015696	ENSG00000116157	GPX7	CL683|GPX6|GPx-7|GSHPx-7|NPGPx	glutathione peroxidase 7	protein-coding
104353	chr17	80988771	80990080	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-2416	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
177711	chr4	122149701	122150250	+	0	NA	Intergenic	L1PA13|LINE|L1	-2356	NM_001384125	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
103680	chr17	78797471	78797630	+	0	NA	non-coding (NR_169584, exon 22 of 23)	non-coding (NR_169584, exon 22 of 23)	-15208	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
129718	chr2	70894971	70895400	+	0	NA	Intergenic	Intergenic	-5391	NM_012476	25806		NM_012476	ENSG00000116035	VAX2	DRES93	ventral anterior homeobox 2	protein-coding
203186	chr6	167153701	167153930	+	0	NA	Intergenic	Intergenic	4165	NM_005299	2853		NM_005299	ENSG00000120436	GPR31	12-HETER|HETER|HETER1	G protein-coupled receptor 31	protein-coding
36601	chr11	6737751	6738850	+	0	NA	Intergenic	Intergenic	-16421	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
188575	chr5	157141151	157141250	+	0	NA	intron (NM_004270, intron 1 of 1)	AluY|SINE|Alu	1575	NM_001100816	9443		NM_004270	ENSG00000155868	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
18919	chr1	168420101	168420580	+	0	NA	intron (NR_037851, intron 2 of 3)	intron (NR_037851, intron 2 of 3)	2316	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
215942	chr8	8342101	8342500	+	0	NA	intron (NM_001369759, intron 3 of 5)	AluY|SINE|Alu	43944	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
132426	chr2	105829571	105829800	+	0	NA	intron (NM_001004722, intron 2 of 3)	L1MC3|LINE|L1	-22162	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
123028	chr19	51128701	51129650	+	0	NA	intron (NM_001198558, intron 6 of 6)	AluSc8|SINE|Alu	4269	NM_014441	27180		NM_014441	ENSG00000129450	SIGLEC9	CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9	sialic acid binding Ig like lectin 9	protein-coding
101548	chr17	67999501	67999700	+	0	NA	Intergenic	Intergenic	-3131	NM_001382359	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
87384	chr16	70453001	70453200	+	0	NA	Intergenic	MER4A|LTR|ERV1	-1495	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
165460	chr3	98657401	98657630	+	0	NA	Intergenic	CpG	-63904	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
239020	chrY	2941901	2942100	+	0	NA	intron (NM_001369710, intron 1 of 4)	AluJo|SINE|Alu	6619	NM_001369702	7544		NM_003411	ENSG00000067646	ZFY	ZNF911	zinc finger protein Y-linked	protein-coding
127615	chr2	43041871	43042030	+	0	NA	Intergenic	Intergenic	-2407	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
7251	chr1	32353401	32353600	+	0	NA	Intergenic	MIR3|SINE|MIR	8743	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
3531	chr1	16075101	16075500	+	0	NA	Intergenic	AluSz|SINE|Alu	-1649	NM_182623	348487		NM_182623	ENSG00000185519	FAM131C	C1orf117	family with sequence similarity 131 member C	protein-coding
109573	chr19	898551	899130	+	0	NA	intron (NM_138774, intron 7 of 7)	intron (NM_138774, intron 7 of 7)	5356	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
106770	chr18	23703021	23703350	+	0	NA	intron (NM_198129, intron 1 of 74)	MER5A|DNA|hAT-Charlie	13732	NM_001127717	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
155112	chr22	37618501	37618700	+	0	NA	intron (NM_001172688, intron 5 of 17)	intron (NM_001172688, intron 5 of 17)	9560	NM_001172688	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
115192	chr19	14451871	14452030	+	0	NA	exon (NM_213560, exon 7 of 22)	exon (NM_213560, exon 7 of 22)	11673	NM_213560	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
170330	chr3	184378771	184379450	+	0	NA	promoter-TSS (NM_001177598)	promoter-TSS (NM_001177598)	578	NM_001290003	7066		NM_000460	ENSG00000090534	THPO	CAMT2|MGDF|MKCSF|ML|MPLLG|THC9|THCYT1|TPO	thrombopoietin	protein-coding
28994	chr10	63274501	63274800	+	0	NA	intron (NM_001322258, intron 2 of 24)	intron (NM_001322258, intron 2 of 24)	-5407	NM_001322254	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
99428	chr17	50113151	50113450	+	0	NA	intron (NM_174920, intron 10 of 10)	intron (NM_174920, intron 10 of 10)	16860	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
233710	chrX	1292621	1292900	+	0	NA	intron (NM_172249, intron 7 of 8)	LTR5B|LTR|ERVK	-1158	NR_037461	100500894		NR_037461	ENSG00000265658	MIR3690	MIR3690-1|MIR3690-2|hsa-mir-3690-1|hsa-mir-3690-2|mir-3690-1|mir-3690-2	microRNA 3690	ncRNA
45078	chr11	117070071	117070850	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSq2|SINE|Alu	27968	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
154276	chr22	31636071	31636850	+	0	NA	intron (NM_001326416, intron 3 of 10)	AluSq4|SINE|Alu	2063	NM_178022	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
127488	chr2	42250771	42251550	+	0	NA	intron (NM_019063, intron 2 of 22)	MER1A|DNA|hAT-Charlie	-80929	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
179481	chr4	184534251	184535380	+	0	NA	intron (NR_147158, intron 1 of 2)	intron (NR_147158, intron 1 of 2)	2768	NR_147158	105377585		NR_147158		LINC02427	-	long intergenic non-protein coding RNA 2427	ncRNA
53985	chr12	74945801	74946280	+	0	NA	Intergenic	Intergenic	263708	NM_139136	3747		NM_139136	ENSG00000166006	KCNC2	DEE103|KV3.2	potassium voltage-gated channel subfamily C member 2	protein-coding
12772	chr1	109641671	109642030	+	0	NA	Intergenic	Intergenic	-14226	NR_024538	2948		NM_000850	ENSG00000168765	GSTM4	GSTM4-4|GTM4	glutathione S-transferase mu 4	protein-coding
122300	chr19	49106551	49107880	+	0	NA	intron (NM_003089, intron 8 of 9)	intron (NM_003089, intron 8 of 9)	-7155	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
184994	chr5	115098151	115098450	+	0	NA	Intergenic	Intergenic	71608	NM_001300759	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
79581	chr16	1001101	1001700	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	19630	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
81107	chr16	4369751	4369850	+	0	NA	intron (NM_001351729, intron 9 of 27)	intron (NM_001351729, intron 9 of 27)	-2048	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
165791	chr3	105801251	105801800	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	66066	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
220236	chr8	96646701	96647050	+	0	NA	intron (NM_016134, intron 1 of 7)	intron (NM_016134, intron 1 of 7)	1633	NM_016134	10404		NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
190637	chr5	181216701	181217700	+	0	NA	Intergenic	AluJr|SINE|Alu	5433	NR_039781	100616342		NR_039781	ENSG00000264732	MIR4638	mir-4638	microRNA 4638	ncRNA
188462	chr5	154642471	154642730	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-40379	NM_001367715	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
115049	chr19	14136271	14137750	+	0	NA	promoter-TSS (NM_018154)	promoter-TSS (NM_018154)	-142	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
133734	chr2	127407671	127409100	+	0	NA	Intergenic	CpG	-10042	NM_001375603	5624		NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C, inactivator of coagulation factors Va and VIIIa	protein-coding
201082	chr6	142802101	142802300	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	142976	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
196097	chr6	42344871	42345300	+	0	NA	intron (NM_033502, intron 3 of 17)	intron (NM_033502, intron 3 of 17)	106966	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
56741	chr12	120132301	120132500	+	0	NA	intron (NM_006836, intron 53 of 57)	intron (NM_006836, intron 53 of 57)	-15647	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
159444	chr3	13876101	13876700	+	0	NA	intron (NM_004625, intron 1 of 3)	L2a|LINE|L2	3671	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
109240	chr19	505571	505730	+	0	NA	TTS (NM_130762)	TTS (NM_130762)	-1847	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
204602	chr7	5329721	5329980	+	0	NA	intron (NM_001080495, intron 19 of 29)	intron (NM_001080495, intron 19 of 29)	46907	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
148592	chr21	5105401	5106250	+	0	NA	Intergenic	Intergenic	3765	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
90599	chr17	1620901	1621300	+	0	NA	intron (NM_152346, intron 2 of 13).2	intron (NM_152346, intron 2 of 13).2	7316	NM_001321365	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
162956	chr3	49670121	49670380	+	0	NA	3' UTR (NM_003458, exon 12 of 12)	3' UTR (NM_003458, exon 12 of 12)	-4101	NM_001640	327		NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
134254	chr2	135245951	135246050	+	0	NA	intron (NM_032143, intron 12 of 20)	intron (NM_032143, intron 12 of 20)	109372	NR_145723	109616967		NR_145723	ENSG00000208308	SNORA40B	-	small nucleolar RNA, H/ACA box 40B	snoRNA
72743	chr15	39497721	39498050	+	0	NA	Intergenic	Intergenic	-83194	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
25449	chr10	6594401	6594900	+	0	NA	Intergenic	L1M7|LINE|L1	-14004	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
115343	chr19	15180601	15181230	+	0	NA	intron (NM_000435, intron 18 of 32)	intron (NM_000435, intron 18 of 32)	-1565	NR_106853	102465476		NR_106853	ENSG00000275711	MIR6795	hsa-mir-6795	microRNA 6795	ncRNA
21441	chr1	205455071	205455330	+	0	NA	promoter-TSS (NR_148934)	promoter-TSS (NR_148934)	-858	NR_148934	284577		NR_148934	ENSG00000224717	LEMD1-DT	-	LEMD1 divergent transcript	ncRNA
184129	chr5	94618001	94619530	+	0	NA	promoter-TSS (NM_001145678)	promoter-TSS (NM_001145678)	96	NM_032290	84250		NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding
24476	chr1	244074301	244075600	+	0	NA	Intergenic	Intergenic	21745	NM_006352	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
96403	chr17	40144651	40145350	+	0	NA	intron (NM_007359, intron 3 of 13)	AluSx|SINE|Alu	4463	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
73127	chr15	41288201	41288400	+	0	NA	intron (NR_152821, intron 2 of 4)	intron (NR_152821, intron 2 of 4)	2958	NR_152821	729082		NR_026757	ENSG00000247556	OIP5-AS1	cyrano|linc-OIP5	OIP5 antisense RNA 1	ncRNA
97206	chr17	42743301	42743500	+	0	NA	intron (NM_001321082, intron 1 of 19)	AluSz6|SINE|Alu	1640	NM_001321079	2145		NM_001991	ENSG00000108799	EZH1	KMT6B	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding
204952	chr7	6350051	6350150	+	0	NA	Intergenic	AluJo|SINE|Alu	-1133	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
32980	chr10	110507471	110507830	+	0	NA	intron (NM_004419, intron 3 of 3)	intron (NM_004419, intron 3 of 3)	9743	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
208012	chr7	55559951	55560250	+	0	NA	intron (NM_001321243, intron 1 of 5)	AluSx|SINE|Alu	-6213	NM_001321248	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
222011	chr8	130045601	130046800	+	0	NA	Intergenic	Intergenic	-29071	NM_001353269	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
121267	chr19	46700301	46700500	+	0	NA	intron (NM_001079881, intron 8 of 18)	AluJo|SINE|Alu	8954	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
48058	chr12	7081951	7082250	+	0	NA	exon (NM_001354346, exon 10 of 11)	exon (NM_001354346, exon 10 of 11)	9793	NM_001354346	715		NM_001733	ENSG00000159403	C1R	EDS8|EDSPD1	complement C1r	protein-coding
37976	chr11	34926051	34926380	+	0	NA	intron (NM_003477, intron 1 of 10)	intron (NM_003477, intron 1 of 10)	9597	NM_003477	8050		NM_003477	ENSG00000110435	PDHX	DLDBP|E3BP|OPDX|PDHXD|PDX1|proX	pyruvate dehydrogenase complex component X	protein-coding
191160	chr6	4801651	4802100	+	0	NA	intron (NM_001368127, intron 1 of 5)	intron (NM_001368127, intron 1 of 5)	25471	NM_001368126	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
77109	chr15	78933071	78933230	+	0	NA	intron (NM_001319137, intron 6 of 12)	intron (NM_001319137, intron 6 of 12)	11896	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
68894	chr14	91338921	91339250	+	0	NA	intron (NM_001080414, intron 8 of 29)	intron (NM_001080414, intron 8 of 29)	78735	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
115227	chr19	14502371	14502530	+	0	NA	Intergenic	MIRb|SINE|MIR	-6301	NM_202494	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
162606	chr3	48701171	48701530	+	0	NA	intron (NM_016291, intron 1 of 5)	AluSq2|SINE|Alu	-15435	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
158775	chr3	9413051	9413150	+	0	NA	intron (NM_001349451, intron 1 of 25)	intron (NM_001349451, intron 1 of 25)	15485	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
69532	chr14	96395221	96395750	+	0	NA	intron (NM_001350891, intron 1 of 16)	Tigger2a|DNA|TcMar-Tigger	3357	NM_001350888	122481		NM_152327	ENSG00000140057	AK7	AK 7|CFAP75|FAP75|SPGF27	adenylate kinase 7	protein-coding
30369	chr10	77981821	77982080	+	0	NA	intron (NM_007055, intron 28 of 30)	AluY|SINE|Alu	47565	NM_007055	11128		NM_007055	ENSG00000148606	POLR3A	ADDH|C160|HLD7|RPC1|RPC155|WDRTS|hRPC155	RNA polymerase III subunit A	protein-coding
140240	chr2	231869671	231869830	+	0	NA	Intergenic	Intergenic	22548	NR_031717	100302126		NR_031717	ENSG00000222246	MIR1471	MIRN1471|hsa-mir-1471	microRNA 1471	ncRNA
55865	chr12	109427851	109428350	+	0	NA	intron (NM_001101421, intron 18 of 30)	AluJb|SINE|Alu	39381	NM_001101421	283446		NM_173597	ENSG00000174527	MYO1H	CCHS2	myosin IH	protein-coding
56978	chr12	120550321	120550780	+	0	NA	intron (NM_001330474, intron 2 of 16)	L2a|LINE|L2	16194	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
101989	chr17	74760571	74761400	+	0	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	12357	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
174515	chr4	40053471	40053800	+	0	NA	intron (NR_027277, intron 1 of 2)	AluY|SINE|Alu	-3215	NM_018177	55728		NM_018177	ENSG00000078177	N4BP2	B3BP	NEDD4 binding protein 2	protein-coding
221064	chr8	116871601	116872030	+	0	NA	intron (NM_006265, intron 1 of 13)	MIR|SINE|MIR	-2609	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
231987	chr9	133335501	133336780	+	0	NA	promoter-TSS (NM_006753)	promoter-TSS (NM_006753)	48	NR_103874	6838		NM_006753	ENSG00000148296	SURF6	RRP14	surfeit 6	protein-coding
59956	chr13	31824751	31825250	+	0	NA	Intergenic	Intergenic	-21783	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
215024	chr7	152406701	152406900	+	0	NA	intron (NM_170606, intron 1 of 58)	intron (NM_170606, intron 1 of 58)	29203	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
57549	chr12	122190651	122191650	+	0	NA	intron (NM_152759, intron 5 of 11)	MIR1_Amn|SINE|MIR	8027	NM_001098519	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
168167	chr3	139762701	139762900	+	0	NA	Intergenic	Intergenic	-84750	NM_178177	349565		NM_178177	ENSG00000163864	NMNAT3	FKSG76|PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
133633	chr2	126777201	126778180	+	0	NA	Intergenic	Intergenic	-121200	NM_001322244	101929926		NM_001322244	ENSG00000237524	TEX51	-	testis expressed 51	protein-coding
27202	chr10	28574221	28574700	+	0	NA	intron (NM_100486, intron 3 of 12)	AluSx3|SINE|Alu	41342	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
225295	chr9	34521971	34522130	+	0	NA	intron (NM_198573, intron 1 of 1)	intron (NM_198573, intron 1 of 1)	940	NM_198573	375704		NM_198573	ENSG00000168913	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
82219	chr16	15020471	15020630	+	0	NA	intron (NM_001324019, intron 12 of 22)	AluY|SINE|Alu	-10153	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
6315	chr1	27638551	27638650	+	0	NA	Intergenic	AluSz|SINE|Alu	-3415	NM_005248	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
94472	chr17	29267701	29268280	+	0	NA	intron (NM_020772, intron 2 of 3)	AluSx1|SINE|Alu	21131	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
55890	chr12	109719401	109720250	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	6000	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
78025	chr15	89912551	89912930	+	0	NA	promoter-TSS (NM_001282380)	promoter-TSS (NM_001282380)	-53	NM_001282380	348110		NM_182616	ENSG00000242498	ARPIN	C15orf38	actin related protein 2/3 complex inhibitor	protein-coding
88617	chr16	85611501	85612500	+	0	NA	intron (NM_001134473, intron 1 of 14)	CpG	591	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
150241	chr21	41369001	41370580	+	0	NA	intron (NM_002463, intron 1 of 13)	intron (NM_002463, intron 1 of 13)	7763	NM_002463	4600		NM_002463	ENSG00000183486	MX2	MXB	MX dynamin like GTPase 2	protein-coding
108919	chr18	79444701	79445130	+	0	NA	intron (NM_172389, intron 3 of 9)	intron (NM_172389, intron 3 of 9)	44616	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
234057	chrX	7085521	7086780	+	0	NA	intron (NM_001178136, intron 2 of 3)	MER67A|LTR|ERV1	-61140	NM_001320750	412		NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase	protein-coding
104059	chr17	80152071	80152750	+	0	NA	Intergenic	MER41B|LTR|ERV1	-5282	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
238917	chrX	154729701	154730100	+	0	NA	intron (NR_104114, intron 1 of 8)	intron (NR_104114, intron 1 of 8)	21177	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
197203	chr6	63597921	63598900	+	0	NA	Intergenic	Intergenic	25930	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
111153	chr19	3300701	3301300	+	0	NA	Intergenic	Intergenic	-58630	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
94734	chr17	30780171	30781530	+	0	NA	intron (NR_144395, intron 8 of 9)	intron (NR_144395, intron 8 of 9)	43842	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
115076	chr19	14206201	14208130	+	0	NA	promoter-TSS (NM_014921)	promoter-TSS (NM_014921)	-996	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
170798	chr3	189132121	189133380	+	0	NA	Intergenic	Intergenic	-39221	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
194707	chr6	33714171	33714730	+	0	NA	Intergenic	Intergenic	-2750	NM_032340	84300		NM_032340	ENSG00000137288	UQCC2	C6orf125|C6orf126|Cbp6|M19|MC3DN7|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
65913	chr14	55294071	55294230	+	0	NA	intron (NM_152231, intron 1 of 1)	L2a|LINE|L2	21996	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
139459	chr2	223929451	223930430	+	0	NA	intron (NM_020830, intron 1 of 11)	intron (NM_020830, intron 1 of 11)	15395	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
49207	chr12	15886151	15886900	+	0	NA	intron (NM_007178, intron 2 of 9)	MIRb|SINE|MIR	4138	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
209457	chr7	76460121	76460780	+	0	NA	Intergenic	AluYc|SINE|Alu	-1205	NM_020892	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
232102	chr9	133685721	133686180	+	0	NA	intron (NM_001134707, intron 16 of 20)	intron (NM_001134707, intron 16 of 20)	-28542	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
210550	chr7	100334771	100334950	+	0	NA	intron (NR_003613, intron 1 of 6)	AluSx1|SINE|Alu	-1205	NR_036569	101752399		NR_036569	ENSG00000272752	STAG3L5P-PVRIG2P-PILRB	FDFACT|LOC101735302-LOC101752334-PILRB|PILRB	STAG3L5P-PVRIG2P-PILRB readthrough	ncRNA
100051	chr17	58089421	58089830	+	0	NA	3' UTR (NM_080677, exon 3 of 3)	3' UTR (NM_080677, exon 3 of 3)	6206	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
207909	chr7	50595121	50595700	+	0	NA	intron (NM_001371008, intron 15 of 15)	intron (NM_001371008, intron 15 of 15)	-30005	NM_001082971	1644		NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
137907	chr2	200869751	200869850	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5142	NR_027856	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
154249	chr22	31613851	31613950	+	0	NA	intron (NM_001007467, intron 27 of 32)	intron (NM_001007467, intron 27 of 32)	7631	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
113785	chr19	10551401	10552000	+	0	NA	promoter-TSS (NR_031603)	promoter-TSS (NR_031603)	-422	NR_031603	100302226		NR_031603	ENSG00000221410	MIR1238	MIRN1238|hsa-mir-1238	microRNA 1238	ncRNA
10503	chr1	66725871	66726400	+	0	NA	intron (NM_001376546, intron 18 of 23)	LTR41|LTR|ERVL	-26324	NM_152665	200132		NM_152665	ENSG00000152760	DYNLT5	TCTEX1D1	dynein light chain Tctex-type family member 5	protein-coding
45103	chr11	117093771	117094300	+	0	NA	intron (NM_001281748, intron 1 of 24)	MIRb|SINE|MIR	4393	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
148747	chr21	7658101	7659680	+	0	NA	Intergenic	Intergenic	33311	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
98487	chr17	47222801	47223000	+	0	NA	intron (NM_001002841, intron 6 of 7)	intron (NM_001002841, intron 6 of 7)	13552	NM_002476	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
6460	chr1	28262501	28262700	+	0	NA	intron (NM_031459, intron 1 of 9)	AluJb|SINE|Alu	3082	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
44780	chr11	112525621	112526080	+	0	NA	intron (NR_120559, intron 2 of 2)	MLT1N2|LTR|ERVL-MaLR	29952	NR_104155	387810		NR_104155	ENSG00000255484	LINC02764	-	long intergenic non-protein coding RNA 2764	ncRNA
164898	chr3	71110201	71110400	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	20286	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
48126	chr12	7896501	7896930	+	0	NA	Intergenic	Intergenic	-5519	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
120587	chr19	45006751	45008100	+	0	NA	intron (NM_006509, intron 2 of 10)	MIR|SINE|MIR	5961	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
16499	chr1	154862451	154862750	+	0	NA	intron (NM_001204087, intron 1 of 8)	intron (NM_001204087, intron 1 of 8)	-2724	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
171105	chr3	195505921	195506350	+	0	NA	Intergenic	Intergenic	37190	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
143668	chr20	31956671	31957030	+	0	NA	Intergenic	Intergenic	-4804	NM_030815	81572		NM_030815	ENSG00000088356	PDRG1	C20orf126|PDRG	p53 and DNA damage regulated 1	protein-coding
67796	chr14	73764571	73765100	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-4532	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
63594	chr14	20481321	20481780	+	0	NA	Intergenic	Intergenic	12144	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
137657	chr2	197429851	197429950	+	0	NA	intron (NM_001005526, intron 1 of 4)	intron (NM_001005526, intron 1 of 4)	5128	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
207659	chr7	45083171	45083480	+	0	NA	exon (NM_001146334, exon 2 of 8)	exon (NM_001146334, exon 2 of 8)	5644	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
223936	chr9	764051	764350	+	0	NA	Intergenic	Intergenic	57523	NM_001354342	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
30167	chr10	74191651	74191950	+	0	NA	intron (NM_001369124, intron 1 of 9)	L1MD2|LINE|L1	15037	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
150823	chr21	44011601	44013500	+	0	NA	exon (NM_003274, exon 1 of 23)	exon (NM_003274, exon 1 of 23)	241	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
77307	chr15	82356801	82357000	+	0	NA	intron (NR_004847, intron 1 of 4)	intron (NR_004847, intron 1 of 4)	1764	NR_004847	100134869		NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	UBE2Q2 pseudogene 2	pseudo
89900	chr16	89692921	89693550	+	0	NA	intron (NM_052987, intron 6 of 12)	intron (NM_052987, intron 6 of 12)	6546	NM_001098533	8558		NM_003674	ENSG00000185324	CDK10	ALSAS|PISSLRE	cyclin dependent kinase 10	protein-coding
107002	chr18	32049501	32051980	+	0	NA	intron (NM_017831, intron 4 of 5)	intron (NM_017831, intron 4 of 5)	31915	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
195971	chr6	41961051	41961150	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-19252	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
675	chr1	1379501	1379900	+	0	NA	Intergenic	AluY|SINE|Alu	-4493	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
180121	chr5	1311071	1311430	+	0	NA	Intergenic	MER51A|LTR|ERV1	-1873	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
73329	chr15	41964221	41964880	+	0	NA	intron (NM_139265, intron 1 of 5)	AluJo|SINE|Alu	8007	NM_139265	30844		NM_139265	ENSG00000103966	EHD4	PAST4	EH domain containing 4	protein-coding
112128	chr19	5603521	5604030	+	0	NA	intron (NM_014649, intron 11 of 20)	MER119|DNA|hAT-Charlie	19001	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
173984	chr4	26197021	26197930	+	0	NA	intron (NM_001374401, intron 1 of 11)	intron (NM_001374401, intron 1 of 11)	34017	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
38144	chr11	35391001	35391530	+	0	NA	intron (NM_001252652, intron 1 of 11)	MER58A|DNA|hAT-Charlie	28293	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
149051	chr21	15062371	15063330	+	0	NA	intron (NM_003489, intron 1 of 3)	intron (NM_003489, intron 1 of 3)	2150	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
198089	chr6	90278071	90278630	+	0	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	18493	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
26414	chr10	17183151	17183250	+	0	NA	intron (NM_001351223, intron 1 of 11)	intron (NM_001351223, intron 1 of 11)	18472	NM_001321006	1787		NM_004412	ENSG00000107614	TRDMT1	DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1	tRNA aspartic acid methyltransferase 1	protein-coding
186359	chr5	134851301	134852030	+	0	NA	intron (NM_001135586, intron 1 of 1)	intron (NM_001135586, intron 1 of 1)	5697	NM_001300894	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
51675	chr12	53067421	53068080	+	0	NA	intron (NM_032840, intron 7 of 10)	intron (NM_032840, intron 7 of 10)	10806	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
159050	chr3	11601901	11602100	+	0	NA	exon (NM_001284390, exon 4 of 7)	exon (NM_001284390, exon 4 of 7)	2581	NM_001284391	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
116675	chr19	18404851	18405600	+	0	NA	Intergenic	Intergenic	-7603	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
51714	chr12	53204601	53204800	+	0	NA	intron (NM_000889, intron 1 of 15)	L1MB5|LINE|L1	2551	NR_104181	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
62300	chr13	98997771	98998180	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	17810	NM_001366677	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
169194	chr3	156735451	156735550	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	58836	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
71184	chr14	105051551	105052530	+	0	NA	exon (NM_013345, exon 4 of 4)	exon (NM_013345, exon 4 of 4)	13390	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
141649	chr2	241739551	241740600	+	0	NA	intron (NM_001352824, intron 2 of 9)	AluJb|SINE|Alu	5445	NM_152783	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
84567	chr16	30611871	30612030	+	0	NA	Intergenic	Intergenic	-1175	NR_073481	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
191019	chr6	3093671	3094030	+	0	NA	intron (NM_001354931, intron 6 of 9)	CpG	-24526	NR_026649	670		NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase like	protein-coding
88952	chr16	87845021	87845930	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-8421	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
176973	chr4	104692351	104692530	+	0	NA	intron (NR_125926, intron 9 of 9)	L1PA2|LINE|L1	-197546	NM_025212	80319		NM_025212	ENSG00000168772	CXXC4	IDAX	CXXC finger protein 4	protein-coding
186053	chr5	134068921	134069780	+	0	NA	Intergenic	Intergenic	-45331	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
225413	chr9	35058271	35058730	+	0	NA	intron (NM_001354927, intron 15 of 16)	AluSc8|SINE|Alu	13808	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
12434	chr1	103524871	103526480	+	0	NA	promoter-TSS (NM_017619)	promoter-TSS (NM_017619)	-24	NM_017619	55599		NM_017619	ENSG00000185946	RNPC3	CPHD7|IGHD5|RBM40|RNP|SNRNP65	RNA binding region (RNP1, RRM) containing 3	protein-coding
195308	chr6	36583271	36584180	+	0	NA	Intergenic	AluY|SINE|Alu	-10588	NR_036610	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
222884	chr8	142775621	142775930	+	0	NA	intron (NM_177457, intron 2 of 3)	intron (NM_177457, intron 2 of 3)	756	NM_001356370	66004		NM_177457	ENSG00000180155	LYNX1	-	Ly6/neurotoxin 1	protein-coding
143940	chr20	32765401	32765600	+	0	NA	intron (NM_175849, intron 1 of 19)	AluSz|SINE|Alu	3115	NM_006892	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
224015	chr9	2824051	2824150	+	0	NA	intron (NM_014878, intron 11 of 17)	intron (NM_014878, intron 11 of 17)	19995	NM_014878	9933		NM_014878	ENSG00000080608	PUM3	HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5	pumilio RNA binding family member 3	protein-coding
171564	chr3	196940551	196941000	+	0	NA	intron (NR_046630, intron 1 of 2)	intron (NR_046630, intron 1 of 2)	898	NR_046630	100874001		NR_046630		NCBP2-AS1	-	NCBP2 antisense RNA 1	ncRNA
81309	chr16	4695611	4696330	+	0	NA	TTS (NR_040252)	TTS (NR_040252)	2252	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
85301	chr16	49440451	49440750	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	66796	NM_144602	123970		NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
228955	chr9	113409621	113410900	+	0	NA	promoter-TSS (NM_152786)	promoter-TSS (NM_152786)	415	NR_027261	54107		NM_017443	ENSG00000148229	POLE3	CHARAC17|CHRAC17|CHRAC2|YBL1|p17	DNA polymerase epsilon 3, accessory subunit	protein-coding
198383	chr6	105587351	105588180	+	0	NA	Intergenic	Intergenic	-184683	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
85972	chr16	57309451	57309550	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-24828	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
97723	chr17	44358821	44359500	+	0	NA	intron (NM_198475, intron 3 of 7)	L2b|LINE|L2	4693	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
1058	chr1	1899121	1900150	+	0	NA	Intergenic	Intergenic	8455	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
172497	chr4	2250271	2250950	+	0	NA	promoter-TSS (NR_039964)	promoter-TSS (NR_039964)	-454	NR_039964	100616358		NR_039964	ENSG00000284276	MIR4800	mir-4800	microRNA 4800	ncRNA
78360	chr15	91319821	91320680	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-143089	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
169929	chr3	178382151	178382250	+	0	NA	Intergenic	L2b|LINE|L2	-37001	NR_046786	100874330		NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA
228605	chr9	105157151	105157480	+	0	NA	Intergenic	Intergenic	-87290	NM_001330731	23446		NM_022109	ENSG00000070214	SLC44A1	CD92|CDW92|CHTL1|CONATOC|CTL1	solute carrier family 44 member 1	protein-coding
135575	chr2	165876751	165877050	+	0	NA	intron (NM_024753, intron 27 of 28)	intron (NM_024753, intron 27 of 28)	-4959	NR_045375	100506124		NR_045375		LOC100506124	-	uncharacterized LOC100506124	ncRNA
4518	chr1	21784651	21785330	+	0	NA	Intergenic	AluY|SINE|Alu	-1791	NM_001330394	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
191313	chr6	6750071	6750230	+	0	NA	Intergenic	Intergenic	-127324	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
221408	chr8	123522551	123523050	+	0	NA	intron (NM_148177, intron 1 of 5)	L2c|LINE|L2	9343	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
168239	chr3	141375501	141376180	+	0	NA	intron (NM_001376119, intron 2 of 3)	intron (NM_001376119, intron 2 of 3)	7336	NM_001376113	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
229394	chr9	121184121	121184630	+	0	NA	intron (NM_016322, intron 5 of 7)	intron (NM_016322, intron 5 of 7)	-17108	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
64683	chr14	32225051	32225300	+	0	NA	Intergenic	X6A_LINE|LINE|CR1	-21906	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
99646	chr17	50633051	50633700	+	0	NA	Intergenic	Intergenic	-1506	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
12252	chr1	100441651	100442150	+	0	NA	intron (NM_001319210, intron 6 of 16)	intron (NM_001319210, intron 6 of 16)	89394	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
66055	chr14	58354951	58355250	+	0	NA	intron (NM_023000, intron 17 of 23)	MER90a|LTR|ERV1	-40830	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
204420	chr7	3107921	3108200	+	0	NA	Intergenic	LTR8|LTR|ERV1	50513	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
28068	chr10	43299451	43300400	+	0	NA	Intergenic	HERVK14-int|LTR|ERVK	-32860	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
153941	chr22	30339471	30339930	+	0	NA	intron (NM_005877, intron 9 of 15)	AluSx|SINE|Alu	-12759	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
2324	chr1	9132171	9132680	+	0	NA	Intergenic	L1MB7|LINE|L1	-3323	NM_024980	80045		NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
78395	chr15	91921321	91921780	+	0	NA	intron (NM_013272, intron 2 of 9)	L1MD2|LINE|L1	67246	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
175899	chr4	80128871	80129450	+	0	NA	Intergenic	Intergenic	-55688	NM_001286780	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
50172	chr12	45986651	45987230	+	0	NA	intron (NM_004719, intron 1 of 14)	THE1A|LTR|ERVL-MaLR	3634	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
170766	chr3	188552451	188552750	+	0	NA	intron (NR_164692, intron 5 of 9)	MLT1D|LTR|ERVL-MaLR	16066	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
121139	chr19	46260521	46260780	+	0	NA	Intergenic	Intergenic	30908	NM_198541	374918		NM_198541	ENSG00000188293	IGFL1	APRG644|UNQ644	IGF like family member 1	protein-coding
105874	chr18	3244471	3244830	+	0	NA	Intergenic	AluSx|SINE|Alu	-2832	NM_001303048	10627		NM_006471	ENSG00000101608	MYL12A	HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B	myosin light chain 12A	protein-coding
213111	chr7	131233921	131234380	+	0	NA	intron (NM_001145354, intron 2 of 18)	AluSq2|SINE|Alu	93629	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
77936	chr15	89328221	89328630	+	0	NA	intron (NM_002693, intron 6 of 22)	intron (NM_002693, intron 6 of 22)	-1615	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
202862	chr6	159819621	159820480	+	0	NA	intron (NM_173516, intron 18 of 18)	intron (NM_173516, intron 18 of 18)	19774	NM_001271862	154197		NM_173516	ENSG00000146453	PNLDC1	HsPNLDC1|SPGF57|Trimmer	PARN like ribonuclease domain containing exonuclease 1	protein-coding
228861	chr9	112329601	112330030	+	0	NA	intron (NM_001375918, intron 1 of 13)	intron (NM_001375918, intron 1 of 13)	3211	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
97881	chr17	45060401	45062980	+	0	NA	promoter-TSS (NM_001288654)	promoter-TSS (NM_001288654)	373	NM_021079	4836		NM_021079	ENSG00000136448	NMT1	HsNMT1|NMT	N-myristoyltransferase 1	protein-coding
11636	chr1	91753221	91753480	+	0	NA	intron (NR_036634, intron 5 of 17)	AluJb|SINE|Alu	132801	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
120806	chr19	45467071	45468400	+	0	NA	promoter-TSS (NM_001114171)	promoter-TSS (NM_001114171)	-261	NM_001114171	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
106123	chr18	9211201	9211400	+	0	NA	intron (NM_001204056, intron 4 of 11)	intron (NM_001204056, intron 4 of 11)	73737	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
154027	chr22	30446201	30446400	+	0	NA	Intergenic	L2c|LINE|L2	13614	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
117248	chr19	19439071	19439430	+	0	NA	intron (NM_001384516, intron 2 of 12)	intron (NM_001384516, intron 2 of 12)	4187	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
164866	chr3	71072171	71072330	+	0	NA	intron (NM_001244810, intron 7 of 20)	AluJr4|SINE|Alu	-7326	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
25813	chr10	11196301	11196800	+	0	NA	intron (NM_001326346, intron 2 of 11)	AluJr|SINE|Alu	31520	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
232474	chr9	136220221	136220580	+	0	NA	intron (NM_181701, intron 6 of 11)	intron (NM_181701, intron 6 of 11)	-15272	NM_178138	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
167819	chr3	133590071	133590730	+	0	NA	TTS (NM_017548)	TTS (NM_017548)	15966	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
172836	chr4	3196321	3198380	+	0	NA	intron (NM_002111, intron 40 of 66)	intron (NM_002111, intron 40 of 66)	-47019	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
135462	chr2	161277601	161278000	+	0	NA	Intergenic	Intergenic	-23157	NR_110593	101929512		NR_110593		PSMD14-DT	-	PSMD14 divergent transcript	ncRNA
177442	chr4	112762771	112763250	+	0	NA	intron (NM_001354269, intron 1 of 43)	intron (NM_001354269, intron 1 of 43)	-54987	NM_001127493	287		NM_001148	ENSG00000145362	ANK2	ANK-2|CFAP87|FAP87|LQT4|brank-2	ankyrin 2	protein-coding
90825	chr17	2289151	2289730	+	0	NA	intron (NM_017575, intron 6 of 18)	AluJr|SINE|Alu	14345	NM_017575	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
97188	chr17	42682391	42682950	+	0	NA	promoter-TSS (NM_016602)	promoter-TSS (NM_016602)	139	NM_003632	8506		NM_003632	ENSG00000108797	CNTNAP1	CASPR|CHN3|CNTNAP|NRXN4|P190	contactin associated protein 1	protein-coding
29642	chr10	71847901	71848530	+	0	NA	intron (NM_002778, intron 1 of 13)	intron (NM_002778, intron 1 of 13)	3036	NM_002778	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
8661	chr1	41862471	41862830	+	0	NA	intron (NR_038260, intron 1 of 2)	intron (NR_038260, intron 1 of 2)	56272	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
172511	chr4	2264401	2264730	+	0	NA	Intergenic	Intergenic	-2456	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
143696	chr20	32176601	32177080	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	13520	NR_002781	128854		NM_178465	ENSG00000235217	TSPY26P	TSPYL3|bA392M18.1	testis specific protein Y-linked 26, pseudogene	pseudo
51222	chr12	50641671	50641830	+	0	NA	intron (NM_173602, intron 3 of 37)	intron (NM_173602, intron 3 of 37)	-122351	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
200732	chr6	137712671	137713030	+	0	NA	Intergenic	Intergenic	26187	NR_121618	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
68550	chr14	89352901	89353600	+	0	NA	intron (NM_001085471, intron 2 of 6)	MIRb|SINE|MIR	63983	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
76869	chr15	77951651	77951950	+	0	NA	Intergenic	Intergenic	-7239	NR_157580	440292		NR_157580		COMMD4P1	-	COMM domain containing 4 pseudogene 1	pseudo
227860	chr9	93589871	93590030	+	0	NA	intron (NM_005392, intron 1 of 21)	intron (NM_005392, intron 1 of 21)	-4891	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
179594	chr4	185423801	185424280	+	0	NA	intron (NR_144317, intron 1 of 11)	AluJb|SINE|Alu	1924	NM_018359	55325		NM_018359	ENSG00000109775	UFSP2	BHD|C4orf20|DEE106|SEMDDR	UFM1 specific peptidase 2	protein-coding
65621	chr14	52281201	52281400	+	0	NA	Intergenic	PRIMA4-int|LTR|ERV1	13602	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
104359	chr17	80996771	80996930	+	0	NA	intron (NM_024591, intron 4 of 7)	FLAM_A|SINE|Alu	5009	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
61629	chr13	73765801	73766500	+	0	NA	intron (NM_007249, intron 5 of 7)	intron (NM_007249, intron 5 of 7)	201906	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
234357	chrX	15647521	15647780	+	0	NA	intron (NM_020665, intron 3 of 5)	MER20|DNA|hAT-Charlie	17155	NM_020665	57393		NM_020665	ENSG00000147003	CLTRN	NX-17|NX17|TMEM27	collectrin, amino acid transport regulator	protein-coding
24713	chr1	247361171	247361330	+	0	NA	intron (NR_168399, intron 1 of 2)	intron (NR_168399, intron 1 of 2)	29196	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
131930	chr2	99066071	99066300	+	0	NA	intron (NM_025244, intron 15 of 20)	intron (NM_025244, intron 15 of 20)	74995	NR_146001	80705		NM_025244	ENSG00000135951	TSGA10	CEP4L|CT79|SPGF26	testis specific 10	protein-coding
126465	chr2	28360571	28361630	+	0	NA	Intergenic	Intergenic	-31758	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
195464	chr6	37029051	37029680	+	0	NA	TTS (NM_173558)	TTS (NM_173558)	23710	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
84142	chr16	29734471	29734830	+	0	NA	Intergenic	AluJb|SINE|Alu	11340	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
82571	chr16	18780371	18780850	+	0	NA	TTS (NM_001030009)	TTS (NM_001030009)	9724	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
27232	chr10	29409101	29410350	+	0	NA	promoter-TSS (NR_110928)	promoter-TSS (NR_110928)	191	NR_110920	102724316		NR_003930	ENSG00000291093	SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
170217	chr3	184166851	184166950	+	0	NA	exon (NM_004423, exon 11 of 15)	exon (NM_004423, exon 11 of 15)	-7946	NM_001025205	1173		NM_004068	ENSG00000161203	AP2M1	AP50|CLAPM1|MRD60|mu2	adaptor related protein complex 2 subunit mu 1	protein-coding
176946	chr4	103019391	103020450	+	0	NA	promoter-TSS (NR_047515)	promoter-TSS (NR_047515)	-215	NM_139173	150159		NM_139173	ENSG00000164037	SLC9B1	NHA1|NHEDC1	solute carrier family 9 member B1	protein-coding
215324	chr7	157352301	157352850	+	0	NA	intron (NM_001363676, intron 1 of 6)	intron (NM_001363676, intron 1 of 6)	15571	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
103563	chr17	78676551	78676900	+	0	NA	intron (NM_017456, intron 12 of 12)	intron (NM_017456, intron 12 of 12)	40307	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
187547	chr5	142774371	142774700	+	0	NA	intron (NM_001349547, intron 1 of 21)	L1MC2|LINE|L1	3308	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
221364	chr8	123352951	123353050	+	0	NA	intron (NM_014109, intron 13 of 27)	AluJo|SINE|Alu	-4870	NR_030382	693130		NR_030382	ENSG00000283172	MIR548D1	MIRN548D1	microRNA 548d-1	ncRNA
83267	chr16	23976401	23976600	+	0	NA	intron (NM_212535, intron 2 of 16)	MLT1K|LTR|ERVL-MaLR	140517	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
35496	chr11	1522821	1523080	+	0	NA	Intergenic	L1M5|LINE|L1	-36171	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
26598	chr10	22234171	22234530	+	0	NA	Intergenic	AluJr4|SINE|Alu	-17722	NR_038921	100130992		NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
27454	chr10	31961651	31962150	+	0	NA	Intergenic	MER50-int|LTR|ERV1	-33024	NM_001270695	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
140579	chr2	233356151	233356450	+	0	NA	intron (NM_152879, intron 1 of 29)	intron (NM_152879, intron 1 of 29)	1806	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
100857	chr17	64217701	64218330	+	0	NA	intron (NM_001288732, intron 1 of 11)	intron (NM_001288732, intron 1 of 11)	12719	NM_001288733	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
69502	chr14	95531471	95531830	+	0	NA	Intergenic	Intergenic	1979	NR_003002	677768		NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA
230859	chr9	129133021	129133280	+	0	NA	intron (NM_001271832, intron 4 of 8)	intron (NM_001271832, intron 4 of 8)	21462	NM_001193397	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
34954	chr11	485851	486150	+	0	NA	intron (NR_138046, intron 4 of 12)	CpG	20768	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
43995	chr11	94473221	94473880	+	0	NA	intron (NM_005590, intron 7 of 18)	intron (NM_005590, intron 7 of 18)	-6970	NR_031630	100302275		NR_031630	ENSG00000221230	MIR548L	MIRN548L|hsa-mir-548l	microRNA 548l	ncRNA
57362	chr12	121783651	121783950	+	0	NA	intron (NM_019034, intron 2 of 4)	AluSx1|SINE|Alu	9888	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
71745	chr15	20659451	20659550	+	0	NA	Intergenic	AluSx3|SINE|Alu	96651	NR_027992	606		NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
63418	chr13	114089201	114089780	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-11535	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
161505	chr3	42555501	42556900	+	0	NA	intron (NM_004206, intron 5 of 6)	intron (NM_004206, intron 5 of 6)	-23594	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
182592	chr5	66010301	66010950	+	0	NA	intron (NM_001253697, intron 4 of 25)	L1MC4|LINE|L1	-65052	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
77139	chr15	79853571	79854000	+	0	NA	intron (NM_006441, intron 2 of 2)	intron (NM_006441, intron 2 of 2)	43212	NR_037654	10588		NM_006441	ENSG00000136371	MTHFS	HsT19268|NEDMEHM	methenyltetrahydrofolate synthetase	protein-coding
97236	chr17	42846051	42846850	+	0	NA	intron (NM_001158, intron 1 of 3)	intron (NM_001158, intron 1 of 3)	1870	NM_001158	314		NM_001158	ENSG00000131480	AOC2	DAO2|RAO|SSAO	amine oxidase copper containing 2	protein-coding
30542	chr10	79509741	79509850	+	0	NA	intron (NR_136625, intron 2 of 2)	intron (NR_136625, intron 2 of 2)	1187	NR_136624	729815		NR_136624	ENSG00000293221	LOC729815	-	uncharacterized LOC729815	ncRNA
222311	chr8	133492821	133493980	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	78487	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
208312	chr7	66118051	66118350	+	0	NA	intron (NM_001040648, intron 1 of 2)	AluSx|SINE|Alu	3353	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
55554	chr12	105936071	105936900	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	203548	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
115043	chr19	14120771	14121130	+	0	NA	intron (NM_018154, intron 3 of 3)	AluSq2|SINE|Alu	-3188	NM_002730	5566		NM_002730	ENSG00000072062	PRKACA	CAFD1|PKACA|PPNAD4	protein kinase cAMP-activated catalytic subunit alpha	protein-coding
96433	chr17	40187601	40188330	+	0	NA	intron (NM_001303534, intron 4 of 14)	AluSz|SINE|Alu	-5632	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
126572	chr2	28747951	28748900	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-3323	NM_206876	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
176690	chr4	100982471	100982630	+	0	NA	Intergenic	Intergenic	258322	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
114445	chr19	12700901	12701450	+	0	NA	non-coding (NR_167979, exon 25 of 25)	non-coding (NR_167979, exon 25 of 25)	2496	NR_132756	106633804		NR_132756		SNORD135	ZL2	small nucleolar RNA, C/D box 135	snoRNA
42274	chr11	68271021	68272900	+	0	NA	promoter-TSS (NM_001300913)	promoter-TSS (NM_001300913)	13	NM_001300913	53838		NM_022338	ENSG00000171067	C11orf24	DM4E3	chromosome 11 open reading frame 24	protein-coding
64294	chr14	23550621	23552350	+	0	NA	5' UTR (NM_033400, exon 1 of 10)	5' UTR (NM_033400, exon 1 of 10)	280	NM_033400	85446		NM_033400	ENSG00000136367	ZFHX2	MARSIS|ZFH-5|ZFH5|ZNF409	zinc finger homeobox 2	protein-coding
43960	chr11	93736201	93736400	+	0	NA	non-coding (NR_146090, exon 6 of 14)	non-coding (NR_146090, exon 6 of 14)	-1064	NR_002973	677822		NR_002973	ENSG00000210825	SNORA40	ACA40|SNORA40A	small nucleolar RNA, H/ACA box 40	snoRNA
133701	chr2	127292351	127292750	+	0	NA	intron (NM_000122, intron 3 of 14)	intron (NM_000122, intron 3 of 14)	1594	NM_001303418	2071		NM_000122	ENSG00000163161	ERCC3	BTF2|GTF2H|RAD25|Ssl2|TFIIH|TTD2|XPB	ERCC excision repair 3, TFIIH core complex helicase subunit	protein-coding
38785	chr11	47216201	47217080	+	0	NA	intron (NM_000107, intron 2 of 9)	intron (NM_000107, intron 2 of 9)	1666	NM_000107	1643		NM_000107	ENSG00000134574	DDB2	DDBB|UV-DDB2|XPE	damage specific DNA binding protein 2	protein-coding
90687	chr17	1728271	1728630	+	0	NA	exon (NM_152348, exon 2 of 11)	exon (NM_152348, exon 2 of 11)	3746	NM_001163809	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
109579	chr19	903651	904230	+	0	NA	intron (NM_138774, intron 1 of 7)	AluY|SINE|Alu	9279	NM_138774	91300		NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
201382	chr6	145012121	145012380	+	0	NA	Intergenic	Intergenic	429102	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
30054	chr10	73819801	73820550	+	0	NA	intron (NM_172171, intron 16 of 20)	intron (NM_172171, intron 16 of 20)	-8355	NR_160744	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
196397	chr6	43285151	43285450	+	0	NA	exon (NM_032538, exon 15 of 15)	exon (NM_032538, exon 15 of 15)	-12960	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
55042	chr12	96396001	96396430	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	4224	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
149857	chr21	35205121	35205980	+	0	NA	Intergenic	Intergenic	-156248	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
205271	chr7	8196601	8196800	+	0	NA	intron (NR_146926, intron 6 of 13)	L1MC1|LINE|L1	65467	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
184123	chr5	94578901	94579130	+	0	NA	intron (NM_001385723, intron 1 of 4)	AluSg|SINE|Alu	39110	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
115349	chr19	15200101	15201300	+	0	NA	intron (NM_000435, intron 1 of 32)	CpG	295	NM_000435	4854		NM_000435	ENSG00000074181	NOTCH3	CADASIL|CADASIL1|CASIL|IMF2|LMNS	notch receptor 3	protein-coding
81137	chr16	4398451	4398550	+	0	NA	intron (NM_001351729, intron 6 of 27)	AluSz|SINE|Alu	17397	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
162111	chr3	46915351	46915830	+	0	NA	Intergenic	L1ME3D|LINE|L1	33341	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
8765	chr1	42736301	42736500	+	0	NA	intron (NM_001185117, intron 2 of 2)	intron (NM_001185117, intron 2 of 2)	3836	NM_148960	149461		NM_148960	ENSG00000164007	CLDN19	HOMG5	claudin 19	protein-coding
235758	chrX	48987751	48987950	+	0	NA	exon (NM_020137, exon 13 of 26)	exon (NM_020137, exon 13 of 26)	14414	NM_020137	56850		NM_020137	ENSG00000068400	GRIPAP1	GRASP-1	GRIP1 associated protein 1	protein-coding
210256	chr7	99396201	99396800	+	0	NA	3' UTR (NM_014891, exon 6 of 6)	3' UTR (NM_014891, exon 6 of 6)	12097	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
95017	chr17	32398371	32398730	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-45960	NM_002815	5717		NM_002815	ENSG00000108671	PSMD11	Rpn6|S9|p44.5	proteasome 26S subunit, non-ATPase 11	protein-coding
122000	chr19	48576621	48576880	+	0	NA	intron (NM_177973, intron 2 of 6)	AluJb|SINE|Alu	1014	NM_004605	6820		NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
202554	chr6	158656651	158657400	+	0	NA	intron (NM_001242395, intron 2 of 15)	intron (NM_001242395, intron 2 of 15)	-6378	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
218502	chr8	52737101	52737380	+	0	NA	Intergenic	Intergenic	-22774	NM_001083617	9821		NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
128264	chr2	54577401	54577600	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	19106	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
170030	chr3	181700001	181701130	+	0	NA	intron (NR_075089, intron 3 of 3)	intron (NR_075089, intron 3 of 3)	-11360	NM_003106	6657		NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box transcription factor 2	protein-coding
142462	chr20	4078671	4078830	+	0	NA	Intergenic	L1MB5|LINE|L1	-63192	NM_001134337	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
189915	chr5	177366921	177367430	+	0	NA	intron (NM_006480, intron 5 of 14)	CpG	9251	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
59357	chr13	24624701	24624950	+	0	NA	Intergenic	Intergenic	44617	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
112712	chr19	7187971	7188150	+	0	NA	intron (NM_001079817, intron 2 of 20)	L2b|LINE|L2	106354	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
152792	chr22	21823671	21823830	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	43895	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
190186	chr5	178203821	178204900	+	0	NA	promoter-TSS (NM_004499)	promoter-TSS (NM_004499)	-173	NM_004499	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
232961	chr9	136957601	136957800	+	0	NA	Intergenic	Intergenic	5427	NM_178536	286256		NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
8432	chr1	40628271	40628830	+	0	NA	intron (NM_014747, intron 7 of 7)	intron (NM_014747, intron 7 of 7)	37132	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
48929	chr12	12705651	12706300	+	0	NA	Intergenic	Intergenic	-9792	NM_006143	2842		NM_006143	ENSG00000183150	GPR19	-	G protein-coupled receptor 19	protein-coding
239320	chrY	17913521	17913650	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-33365	NM_004825	9426		NM_004825	ENSG00000182415	CDY2A	CDY|CDY2	chromodomain Y-linked 2A	protein-coding
22764	chr1	224394721	224395780	+	0	NA	intron (NM_001115113, intron 12 of 13)	MIR|SINE|MIR	3061	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
37668	chr11	26276871	26277030	+	0	NA	intron (NM_001313726, intron 1 of 27)	intron (NM_001313726, intron 1 of 27)	11057	NR_132968	105376599		NR_132968		ANO3-AS1	-	ANO3 antisense RNA 1	ncRNA
58574	chr12	132439571	132440130	+	0	NA	Intergenic	Intergenic	-50301	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
67015	chr14	67512501	67512800	+	0	NA	intron (NM_001348549, intron 1 of 3)	intron (NM_001348549, intron 1 of 3)	2565	NM_001348544	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
37377	chr11	16795251	16795350	+	0	NA	intron (NM_175058, intron 17 of 22)	L1MB2|LINE|L1	56653	NM_014267	10944		NM_014267	ENSG00000110696	C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
171852	chr4	714671	714830	+	0	NA	intron (NM_001317836, intron 1 of 11)	intron (NM_001317836, intron 1 of 11)	8918	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
45880	chr11	119742331	119743150	+	0	NA	Intergenic	Intergenic	13157	NR_120587	102724301		NR_120587	ENSG00000254854	NECTIN1-DT	-	NECTIN1 divergent transcript	ncRNA
157747	chr22	46638921	46639350	+	0	NA	intron (NM_001366660, intron 3 of 17)	intron (NM_001366660, intron 3 of 17)	18749	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
108282	chr18	63307921	63308450	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	11584	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
122281	chr19	49073801	49074350	+	0	NA	Intergenic	Intergenic	-1134	NM_031886	3743		NM_031886	ENSG00000104848	KCNA7	HAK6|KV1.7	potassium voltage-gated channel subfamily A member 7	protein-coding
138528	chr2	207479371	207479530	+	0	NA	Intergenic	Intergenic	-50512	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
144820	chr20	36776171	36776330	+	0	NA	Intergenic	Intergenic	-2487	NM_001145318	79980		NM_024918	ENSG00000149636	DSN1	C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3	DSN1 component of MIS12 kinetochore complex	protein-coding
123328	chr19	53586271	53587180	+	0	NA	Intergenic	AluJb|SINE|Alu	16772	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
56666	chr12	119991401	119991830	+	0	NA	intron (NR_147894, intron 1 of 8)	intron (NR_147894, intron 1 of 8)	1771	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
36631	chr11	7528601	7529000	+	0	NA	intron (NM_001351855, intron 1 of 24)	intron (NM_001351855, intron 1 of 24)	14801	NM_001351856	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
231914	chr9	133100871	133101600	+	0	NA	intron (NM_001271775, intron 16 of 17)	L2a|LINE|L2	18696	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
197209	chr6	63639651	63640550	+	0	NA	intron (NM_001290260, intron 1 of 3)	intron (NM_001290260, intron 1 of 3)	3619	NM_001290260	23469		NM_015153	ENSG00000118482	PHF3	-	PHD finger protein 3	protein-coding
104053	chr17	80144351	80144450	+	0	NA	intron (NM_014740, intron 1 of 11)	intron (NM_014740, intron 1 of 11)	2728	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
156157	chr22	40196621	40197230	+	0	NA	intron (NM_015088, intron 1 of 20)	MIRb|SINE|MIR	19000	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
108913	chr18	79437101	79438600	+	0	NA	intron (NM_172389, intron 3 of 9)	intron (NM_172389, intron 3 of 9)	37551	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
105455	chr17	83023201	83023600	+	0	NA	intron (NR_135465, intron 4 of 13)	intron (NR_135465, intron 4 of 13)	-16403	NM_001320743	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
101212	chr17	65559601	65560450	+	0	NA	intron (NM_004655, intron 1 of 10)	CpG	1623	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
2454	chr1	9639321	9639880	+	0	NA	Intergenic	Intergenic	-12131	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
187825	chr5	146796321	146796980	+	0	NA	intron (NM_001271899, intron 2 of 9)	L2b|LINE|L2	82107	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
46942	chr11	134400021	134400280	+	0	NA	intron (NM_054025, intron 1 of 5)	intron (NM_054025, intron 1 of 5)	11768	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
229406	chr9	121198521	121198850	+	0	NA	intron (NM_016322, intron 1 of 7)	L2a|LINE|L2	-2798	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
95834	chr17	38808601	38808980	+	0	NA	intron (NM_017748, intron 6 of 9)	AluSq2|SINE|Alu	-8885	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
65570	chr14	51962851	51963580	+	0	NA	intron (NM_053064, intron 3 of 3)	intron (NM_053064, intron 3 of 3)	-26331	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
82620	chr16	18924001	18924480	+	0	NA	intron (NM_015092, intron 1 of 62)	intron (NM_015092, intron 1 of 62)	2168	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
161164	chr3	39100971	39101750	+	0	NA	intron (NM_001278789, intron 1 of 6)	MIR|SINE|MIR	6267	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
154821	chr22	37051301	37052600	+	0	NA	intron (NM_001282685, intron 1 of 6)	CpG	214	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
101983	chr17	74754471	74756200	+	0	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	6707	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
142575	chr20	5488871	5489030	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	15646	NR_015406	149837		NR_015406	ENSG00000205181	LINC00654	-	long intergenic non-protein coding RNA 654	ncRNA
133639	chr2	127024671	127024830	+	0	NA	Intergenic	Intergenic	57315	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
228067	chr9	96157671	96158030	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-41439	NR_132344	158434		NM_001256408	ENSG00000275465	LOC158434	-	uncharacterized LOC158434	ncRNA
238984	chrX	155641571	155641930	+	0	NA	intron (NM_001304990, intron 1 of 2)	LTR30|LTR|ERV1	-28798	NM_018196	55217		NM_018196	ENSG00000185973	TMLHE	AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130	trimethyllysine hydroxylase, epsilon	protein-coding
203637	chr7	967521	968280	+	0	NA	3' UTR (NM_001031617, exon 3 of 3)	3' UTR (NM_001031617, exon 3 of 3)	7649	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
232855	chr9	136792771	136792930	+	0	NA	3' UTR (NM_032928, exon 5 of 5)	3' UTR (NM_032928, exon 5 of 5)	1506	NM_032928	85014		NM_032928	ENSG00000244187	TMEM141	-	transmembrane protein 141	protein-coding
54790	chr12	94244621	94245580	+	0	NA	intron (NM_005761, intron 12 of 30)	intron (NM_005761, intron 12 of 30)	-17519	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
100678	chr17	63771951	63772300	+	0	NA	intron (NM_020198, intron 1 of 12)	MIR|SINE|MIR	1472	NM_020198	57003		NM_020198	ENSG00000108588	CCDC47	GK001|MSTP041|THNS	coiled-coil domain containing 47	protein-coding
87492	chr16	71801421	71803700	+	0	NA	intron (NM_001128, intron 1 of 22)	AluSx1|SINE|Alu	6274	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
109546	chr19	874421	874880	+	0	NA	intron (NM_005481, intron 10 of 15)	AluJo|SINE|Alu	14986	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
141744	chr2	241885471	241885630	+	0	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	4187	NR_110220	101927289		NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
184770	chr5	110108651	110108750	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	225518	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
152547	chr22	20997371	20997550	+	0	NA	3' UTR (NM_006767, exon 21 of 21)	3' UTR (NM_006767, exon 21 of 21)	-4462	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
207653	chr7	45078951	45079050	+	0	NA	Intergenic	Intergenic	9969	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
150829	chr21	44018701	44019750	+	0	NA	intron (NM_003274, intron 1 of 22)	AluJb|SINE|Alu	6916	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
236292	chrX	66728671	66729300	+	0	NA	Intergenic	Intergenic	-89687	NM_001199687	60401		NM_021783	ENSG00000131080	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
54765	chr12	94126201	94126600	+	0	NA	Intergenic	Intergenic	-22177	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
86048	chr16	57569301	57569700	+	0	NA	intron (NM_001318481, intron 9 of 10)	intron (NM_001318481, intron 9 of 10)	26857	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
154327	chr22	32140751	32141480	+	0	NA	Intergenic	Intergenic	18188	NM_001010859	150297		NM_001010859	ENSG00000205856	C22orf42	dJ90G24.6	chromosome 22 open reading frame 42	protein-coding
111159	chr19	3309301	3309780	+	0	NA	Intergenic	Intergenic	-50090	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
47464	chr12	3871371	3871880	+	0	NA	intron (NM_001286522, intron 1 of 7)	intron (NM_001286522, intron 1 of 7)	1774	NM_001286522	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
120514	chr19	44843071	44843230	+	0	NA	Intergenic	Intergenic	-3147	NM_001042724	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
106994	chr18	32036571	32037330	+	0	NA	intron (NM_017831, intron 1 of 5)	intron (NM_017831, intron 1 of 5)	18125	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
139453	chr2	223865021	223866450	+	0	NA	Intergenic	AluJb|SINE|Alu	-28153	NR_110905	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
11606	chr1	91698571	91698730	+	0	NA	intron (NR_036634, intron 15 of 17)	AluJb|SINE|Alu	187501	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
147775	chr20	62549801	62550000	+	0	NA	promoter-TSS (NM_001302812)	promoter-TSS (NM_001302812)	-553	NM_178463	128826		NM_178463	ENSG00000174407	MIR1-1HG	C20orf166|MIR133A2HG	MIR1-1 host gene	ncRNA
53874	chr12	70254701	70255200	+	0	NA	intron (NR_037615, intron 1 of 16)	AluSx3|SINE|Alu	11236	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
207903	chr7	50466451	50466950	+	0	NA	intron (NM_001082971, intron 13 of 14)	intron (NM_001082971, intron 13 of 14)	-16294	NM_001287495	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
129297	chr2	68514371	68514530	+	0	NA	intron (NM_173545, intron 5 of 9)	L1MEb|LINE|L1	46865	NM_173545	200558		NM_173545	ENSG00000169621	APLF	APFL|C2orf13|PALF|Xip1|ZCCHH1	aprataxin and PNKP like factor	protein-coding
199190	chr6	111775271	111775830	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-15633	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
77906	chr15	89203771	89204530	+	0	NA	Intergenic	Intergenic	17429	NM_000326	6017		NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
37179	chr11	14065171	14065530	+	0	NA	intron (NM_006108, intron 3 of 15)	intron (NM_006108, intron 3 of 15)	102627	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
154243	chr22	31608451	31608950	+	0	NA	intron (NM_001007467, intron 22 of 32)	intron (NM_001007467, intron 22 of 32)	12831	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
128786	chr2	62299621	62299930	+	0	NA	Intergenic	AluSz6|SINE|Alu	84254	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
185528	chr5	131340171	131340330	+	0	NA	intron (NM_001375633, intron 2 of 5)	MER44D|DNA|TcMar-Tigger	76197	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
76520	chr15	75042851	75043950	+	0	NA	5' UTR (NM_001301104, exon 1 of 4)	5' UTR (NM_001301104, exon 1 of 4)	114	NM_001301105	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
149678	chr21	33894571	33895330	+	0	NA	3' UTR (NM_003024, exon 40 of 40)	3' UTR (NM_003024, exon 40 of 40)	20854	NM_001697	539		NM_001697	ENSG00000241837	ATP5PO	ATP5O|ATPO|HMC08D05|MC5DN7|OSCP	ATP synthase peripheral stalk subunit OSCP	protein-coding
140546	chr2	233259871	233260430	+	0	NA	intron (NM_198890, intron 2 of 13).2	intron (NM_198890, intron 2 of 13).2	8477	NM_017974	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
207754	chr7	48919551	48919650	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-4947	NM_152627	168448		NM_152627	ENSG00000218305	CDC14C	CDC14B2|CDC14Bretro	cell division cycle 14C	protein-coding
229094	chr9	114375501	114376930	+	0	NA	intron (NM_001317952, intron 2 of 20)	intron (NM_001317952, intron 2 of 20)	11767	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
141643	chr2	241729921	241730380	+	0	NA	TTS (NM_032329)	TTS (NM_032329)	-4480	NM_001287249	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
173917	chr4	25240801	25241150	+	0	NA	intron (NM_018323, intron 1 of 9)	HERV9NC-int|LTR|ERV1	6942	NM_018323	55300		NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
35285	chr11	964921	966050	+	0	NA	intron (NR_144509, intron 2 of 20)	intron (NR_144509, intron 2 of 20)	39615	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
59159	chr13	21581901	21582120	+	0	NA	intron (NM_152726, intron 1 of 11)	intron (NM_152726, intron 1 of 11)	22160	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
176979	chr4	104930471	104931230	+	0	NA	Intergenic	L1PA7|LINE|L1	-215025	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
214182	chr7	146090001	146090250	+	0	NA	Intergenic	Intergenic	-684146	NM_014141	26047		NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein 2	protein-coding
191013	chr6	3088301	3089080	+	0	NA	intron (NM_001354931, intron 5 of 9)	L1MDa|LINE|L1	20196	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
206144	chr7	27785471	27785830	+	0	NA	intron (NM_006024, intron 7 of 16)	MLT1F|LTR|ERVL-MaLR	45555	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
194252	chr6	32529851	32530630	+	0	NA	promoter-TSS (NM_002125)	promoter-TSS (NM_002125)	47	NM_002125	3127		NM_002125	ENSG00000198502	HLA-DRB5	DRB5|HLA-DRB5*	major histocompatibility complex, class II, DR beta 5	protein-coding
145426	chr20	43462021	43462530	+	0	NA	non-coding (NR_034009, exon 7 of 7)	non-coding (NR_034009, exon 7 of 7)	4379	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
218935	chr8	60913601	60914180	+	0	NA	Intergenic	Intergenic	-3092	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
180448	chr5	10607201	10607400	+	0	NA	intron (NM_001164440, intron 1 of 3)	MLT1I|LTR|ERVL-MaLR	43230	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
219225	chr8	66773571	66773800	+	0	NA	intron (NM_001033578, intron 1 of 16)	MER44B|DNA|TcMar-Tigger	-1496	NM_013257	23678		NM_013257	ENSG00000104205	SGK3	CISK|SGK2|SGKL	serum/glucocorticoid regulated kinase family member 3	protein-coding
23950	chr1	235127671	235129300	+	0	NA	promoter-TSS (NR_002956)	promoter-TSS (NR_002956)	352	NM_014765	9804		NM_014765	ENSG00000173726	TOMM20	MAS20|MOM19|TOM20	translocase of outer mitochondrial membrane 20	protein-coding
121716	chr19	47609901	47611030	+	0	NA	intron (NM_015711, intron 1 of 14)	intron (NM_015711, intron 1 of 14)	2269	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
198083	chr6	90266701	90267900	+	0	NA	intron (NM_021813, intron 2 of 8)	intron (NM_021813, intron 2 of 8)	29543	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
112441	chr19	6370321	6370580	+	0	NA	TTS (NM_006012)	TTS (NM_006012)	-2344	NM_032306	84266		NM_032306	ENSG00000125652	ALKBH7	ABH7|SPATA11|UNQ6002	alkB homolog 7	protein-coding
195008	chr6	35415071	35415900	+	0	NA	intron (NM_001171820, intron 3 of 5)	intron (NM_001171820, intron 3 of 5)	-36853	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
186353	chr5	134847601	134847800	+	0	NA	intron (NM_001135586, intron 1 of 1)	intron (NM_001135586, intron 1 of 1)	1732	NM_001300894	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
12404	chr1	101311451	101311850	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-12187	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
85331	chr16	50093671	50094180	+	0	NA	intron (NR_138092, intron 12 of 15)	MLT1G3|LTR|ERVL-MaLR	27955	NM_182922	55027		NM_017939	ENSG00000155393	HEATR3	DBA21|SYO1	HEAT repeat containing 3	protein-coding
193732	chr6	31245421	31245880	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	26442	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
81339	chr16	4770551	4770650	+	0	NA	Intergenic	AluSx|SINE|Alu	-3438	NM_001303450	26048		NM_021646	ENSG00000103199	ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
157592	chr22	46004171	46004950	+	0	NA	Intergenic	Intergenic	-2056	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
224315	chr9	6684471	6684700	+	0	NA	Intergenic	AluSx|SINE|Alu	-36278	NM_001146696	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
117512	chr19	20051851	20052700	+	0	NA	Intergenic	CpG	-12770	NM_033196	91120		NM_033196	ENSG00000197124	ZNF682	BC39498_3	zinc finger protein 682	protein-coding
234965	chrX	39201371	39201530	+	0	NA	Intergenic	Intergenic	125912	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
191319	chr6	6856571	6856800	+	0	NA	Intergenic	Intergenic	-233859	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
222817	chr8	142472951	142473310	+	0	NA	intron (NM_001702, intron 2 of 30)	intron (NM_001702, intron 2 of 30)	23481	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
169923	chr3	178001751	178002330	+	0	NA	Intergenic	L1MCc|LINE|L1	185175	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
52673	chr12	56346521	56347080	+	0	NA	intron (NM_001385115, intron 20 of 23)	intron (NM_001385115, intron 20 of 23)	7916	NM_016584	51561		NM_016584	ENSG00000110944	IL23A	IL-23|IL-23A|IL23P19|P19|SGRF	interleukin 23 subunit alpha	protein-coding
63850	chr14	21525721	21526980	+	0	NA	promoter-TSS (NM_001364564)	promoter-TSS (NM_001364564)	-4	NM_001291447	6297		NM_005407	ENSG00000165821	SALL2	COLB|HSAL2|Sal-2|ZNF795|p150(Sal2)	spalt like transcription factor 2	protein-coding
62330	chr13	99068801	99069000	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	17794	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
168233	chr3	141320801	141321430	+	0	NA	Intergenic	Intergenic	-3071	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
5519	chr1	25794821	25795150	+	0	NA	Intergenic	L2b|LINE|L2	-5208	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
187792	chr5	146209171	146209930	+	0	NA	intron (NM_018989, intron 1 of 20)	intron (NM_018989, intron 1 of 20)	5945	NM_018989	54439		NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18|ZC3H20	RNA binding motif protein 27	protein-coding
159350	chr3	13233201	13233400	+	0	NA	intron (NM_001376938, intron 1 of 15)	MER5A|DNA|hAT-Charlie	49957	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
292	chr1	948671	949230	+	0	NA	intron (NM_015658, intron 12 of 18)	intron (NM_015658, intron 12 of 18)	10306	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
175893	chr4	80075071	80075230	+	0	NA	Intergenic	MER49|LTR|ERV1	-1678	NM_001286780	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
40148	chr11	62850671	62852550	+	0	NA	TTS (NR_152575)	TTS (NR_152575)	1425	NR_000008	9304		NR_000008	ENSG00000277194	SNORD22	RNU22|U22	small nucleolar RNA, C/D box 22	snoRNA
8099	chr1	39104801	39106900	+	0	NA	intron (NM_012090, intron 1 of 92)	CpG	21683	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
15548	chr1	150541371	150541730	+	0	NA	Intergenic	AluSc|SINE|Alu	-7858	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
164115	chr3	56684471	56684630	+	0	NA	Intergenic	Intergenic	-1285	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
186059	chr5	134076401	134076800	+	0	NA	Intergenic	Intergenic	-38081	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
225419	chr9	35062871	35063380	+	0	NA	intron (NM_001354927, intron 6 of 16)	intron (NM_001354927, intron 6 of 16)	9183	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
80417	chr16	2619421	2620030	+	0	NA	intron (NR_015441, intron 3 of 3)	intron (NR_015441, intron 3 of 3)	16341	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
149351	chr21	29145501	29145700	+	0	NA	promoter-TSS (NM_001286624)	promoter-TSS (NM_001286624)	23	NM_001286624	56911		NM_020152	ENSG00000156265	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
198389	chr6	105645871	105647050	+	0	NA	Intergenic	Intergenic	-243378	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
196891	chr6	52286751	52287500	+	0	NA	Intergenic	Intergenic	-2383	NM_001270472	4172		NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding
155728	chr22	39138471	39139280	+	0	NA	intron (NM_001346743, intron 3 of 5)	intron (NM_001346743, intron 3 of 5)	13805	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
178567	chr4	151119571	151119930	+	0	NA	TTS (NM_001128924)	TTS (NM_001128924)	15923	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
76671	chr15	75698071	75698230	+	0	NA	intron (NM_001897, intron 1 of 9)	intron (NM_001897, intron 1 of 9)	14698	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
18116	chr1	160710501	160710930	+	0	NA	intron (NM_001256030, intron 1 of 2)	intron (NM_001256030, intron 1 of 2)	1107	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
40841	chr11	65025271	65025700	+	0	NA	intron (NR_037650, intron 3 of 10)	intron (NR_037650, intron 3 of 10)	-1954	NM_013306	29907		NM_013306	ENSG00000110025	SNX15	HSAF001435	sorting nexin 15	protein-coding
161932	chr3	46090001	46090200	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-4256	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
77337	chr15	82530351	82531480	+	0	NA	Intergenic	Intergenic	9542	NM_001021	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
42754	chr11	72723751	72724250	+	0	NA	intron (NM_001040118, intron 3 of 34)	intron (NM_001040118, intron 3 of 34)	-1642	NM_001135190	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
107302	chr18	44799871	44800230	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	99175	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
89930	chr16	89729521	89730080	+	0	NA	intron (NR_110122, intron 6 of 10)	intron (NR_110122, intron 6 of 10)	8263	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
60268	chr13	40605871	40606430	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	60491	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
167813	chr3	133581521	133581780	+	0	NA	intron (NM_001282764, intron 2 of 4)	MIR|SINE|MIR	7216	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
129122	chr2	65234221	65234680	+	0	NA	intron (NM_005722, intron 1 of 8)	intron (NM_005722, intron 1 of 8)	6619	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
6463	chr1	28263971	28264130	+	0	NA	intron (NM_031459, intron 1 of 9)	FLAM_C|SINE|Alu	4532	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
234851	chrX	24676521	24676780	+	0	NA	Intergenic	Intergenic	-3763	NM_001163264	9468		NM_004845	ENSG00000102230	PCYT1B	CCTB|CTB	phosphate cytidylyltransferase 1B, choline	protein-coding
45133	chr11	117191101	117191600	+	0	NA	intron (NM_001040455, intron 18 of 25)	AluSx|SINE|Alu	-7944	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
144571	chr20	35770201	35770430	+	0	NA	Intergenic	Intergenic	-1700	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
213956	chr7	142722351	142722950	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	-26822	NM_002769	5644		NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	serine protease 1	protein-coding
39918	chr11	62521951	62522250	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	23564	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
171780	chr4	212551	212800	+	0	NA	promoter-TSS (NR_027481)	promoter-TSS (NR_027481)	75	NR_027481	642280		NM_001039758	ENSG00000290382	ZNF876P	-	zinc finger protein 876, pseudogene	pseudo
152825	chr22	21937851	21939250	+	0	NA	non-coding (NR_147620, exon 1 of 2)	non-coding (NR_147620, exon 1 of 2)	313	NR_147620	100286925		NR_147620		PPM1F-AS1	-	PPM1F antisense RNA 1	ncRNA
154570	chr22	36261821	36262280	+	0	NA	intron (NM_145343, intron 6 of 6)	MIRb|SINE|MIR	8917	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
124285	chr19	57823001	57823200	+	0	NA	Intergenic	Intergenic	4362	NR_024162	2282		NR_024162		FKBP1AP1	FKBP12|FKBP1P1	FKBP prolyl isomerase 1A pseudogene 1	pseudo
121133	chr19	46078601	46078830	+	0	NA	Intergenic	Intergenic	-1086	NR_163177	444882		NM_001002923	ENSG00000204869	IGFL4	-	IGF like family member 4	protein-coding
8409	chr1	40404371	40405230	+	0	NA	intron (NM_001198980, intron 1 of 9)	intron (NM_001198980, intron 1 of 9)	8000	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
10533	chr1	66960671	66960830	+	0	NA	intron (NM_001077702, intron 8 of 15)	intron (NM_001077702, intron 8 of 15)	30494	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
100351	chr17	59914151	59914880	+	0	NA	intron (NM_001272042, intron 3 of 13)	intron (NM_001272042, intron 3 of 13)	21394	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
178710	chr4	152681071	152681430	+	0	NA	Intergenic	Intergenic	-1253	NM_152680	201799		NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding
220530	chr8	100687721	100688080	+	0	NA	Intergenic	AluSz|SINE|Alu	15124	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
99761	chr17	51001021	51001600	+	0	NA	intron (NM_001130527, intron 12 of 29)	intron (NM_001130527, intron 12 of 29)	45568	NM_001251971	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
113100	chr19	8284051	8284900	+	0	NA	Intergenic	AluSx|SINE|Alu	23883	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
49237	chr12	19382051	19382400	+	0	NA	Intergenic	Intergenic	-57267	NM_153207	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
94704	chr17	30695751	30696250	+	0	NA	Intergenic	AluSz|SINE|Alu	-13608	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
236127	chrX	57595251	57595780	+	0	NA	3' UTR (NM_007157, exon 1 of 1)	3' UTR (NM_007157, exon 1 of 1)	3504	NM_007157	158586		NM_007157	ENSG00000198455	ZXDB	ZNF905|dJ83L6.1	zinc finger X-linked duplicated B	protein-coding
106129	chr18	9271121	9271380	+	0	NA	intron (NM_001204056, intron 9 of 11)	AluJb|SINE|Alu	-63523	NM_020648	57045		NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation BMP signaling modulator 1	protein-coding
213606	chr7	139399271	139399750	+	0	NA	intron (NM_016019, intron 3 of 9)	AluY|SINE|Alu	28016	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
182747	chr5	68278801	68279200	+	0	NA	intron (NM_181523, intron 4 of 15)	MLT1B|LTR|ERVL-MaLR	-9519	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
115376	chr19	15239501	15239900	+	0	NA	exon (NM_058243, exon 16 of 20)	exon (NM_058243, exon 16 of 20)	-6653	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
168421	chr3	142444051	142444150	+	0	NA	intron (NM_019001, intron 1 of 41)	L1MA2|LINE|L1	3937	NM_019001	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
226724	chr9	75200921	75201250	+	0	NA	Intergenic	Intergenic	112571	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
228048	chr9	96020721	96022200	+	0	NA	intron (NR_024129, intron 1 of 1)	CpG	351	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
42046	chr11	67453851	67454350	+	0	NA	intron (NM_001379183, intron 3 of 8)	intron (NM_001379183, intron 3 of 8)	-1254	NM_145200	57010		NM_145200	ENSG00000175544	CABP4	CRSD|CSNB2B	calcium binding protein 4	protein-coding
61091	chr13	48411451	48412200	+	0	NA	exon (NM_005767, exon 7 of 7)	exon (NM_005767, exon 7 of 7)	1288	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
65099	chr14	41606421	41607280	+	0	NA	promoter-TSS (NM_001330106)	promoter-TSS (NM_001330106)	-6	NM_001346173	145581		NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
208737	chr7	73438701	73438900	+	0	NA	Intergenic	Intergenic	5022	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
187596	chr5	142880471	142881050	+	0	NA	intron (NR_146198, intron 4 of 22)	intron (NR_146198, intron 4 of 22)	-11850	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
138739	chr2	214683501	214684180	+	0	NA	Intergenic	L1PA2|LINE|L1	125843	NM_001282549	580		NM_000465	ENSG00000138376	BARD1	-	BRCA1 associated RING domain 1	protein-coding
149800	chr21	34971671	34971850	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	67666	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
176997	chr4	105271971	105272330	+	0	NA	intron (NM_001127208, intron 9 of 10)	intron (NM_001127208, intron 9 of 10)	80731	NR_126420	104384744		NR_126420		TET2-AS1	-	TET2 antisense RNA 1	ncRNA
7817	chr1	36293271	36293630	+	0	NA	intron (NM_001321471, intron 8 of 12)	intron (NM_001321471, intron 8 of 12)	-12918	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
114835	chr19	13827451	13827550	+	0	NA	intron (NM_023072, intron 11 of 12)	AluSz6|SINE|Alu	8859	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
108105	chr18	62087921	62088500	+	0	NA	intron (NM_176787, intron 25 of 30)	intron (NM_176787, intron 25 of 30)	98846	NM_176787	23556		NM_012327	ENSG00000197563	PIGN	MCAHS|MCAHS1|MCD4|MDC4|PIG-N	phosphatidylinositol glycan anchor biosynthesis class N	protein-coding
79199	chr16	339151	340000	+	0	NA	intron (NM_181050, intron 2 of 9)	AluSx1|SINE|Alu	13148	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
29561	chr10	71486651	71486750	+	0	NA	intron (NM_001171931, intron 3 of 24)	MIRc|SINE|MIR	25220	NR_120672	102723377		NR_120672	ENSG00000223817	CDH23-AS1	C10orf106|NCRNA00223|bA327E2.3	CDH23 antisense RNA 1	ncRNA
24504	chr1	244450171	244451000	+	0	NA	intron (NM_001365073, intron 1 of 12)	intron (NM_001365073, intron 1 of 12)	1324	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
159801	chr3	16334101	16334500	+	0	NA	intron (NM_015150, intron 7 of 9)	L1MC5a|LINE|L1	69088	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
41154	chr11	65599501	65599850	+	0	NA	exon (NM_002419, exon 9 of 10)	exon (NM_002419, exon 9 of 10)	-3875	NM_033348	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
37867	chr11	33802151	33802950	+	0	NA	Intergenic	Intergenic	27851	NR_120550	101928440		NR_120550	ENSG00000254508	FBXO3-DT	FBXO3-AS1	FBXO3 divergent transcript	ncRNA
145315	chr20	41072651	41073100	+	0	NA	intron (NM_003286, intron 3 of 20)	intron (NM_003286, intron 3 of 20)	44053	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
123263	chr19	53396251	53396550	+	0	NA	intron (NM_001350496, intron 1 of 12)	LTR61|LTR|ERV1	1251	NM_001350496	110116772		NM_001350496		ZNF765-ZNF761	-	ZNF765-ZNF761 readthrough	protein-coding
2369	chr1	9317551	9318050	+	0	NA	intron (NM_025106, intron 1 of 2)	intron (NM_025106, intron 1 of 2)	24906	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
224426	chr9	15292821	15293200	+	0	NA	intron (NM_152574, intron 1 of 19)	Tigger3b|DNA|TcMar-Tigger	14350	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
46440	chr11	128052601	128053450	+	0	NA	Intergenic	Intergenic	-155741	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
147498	chr20	59167701	59168350	+	0	NA	intron (NM_178457, intron 1 of 5)	L1MD1|LINE|L1	4204	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
157768	chr22	46736171	46736630	+	0	NA	intron (NM_022766, intron 1 of 12)	intron (NM_022766, intron 1 of 12)	1852	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
99296	chr17	49792721	49792980	+	0	NA	intron (NM_001199156, intron 2 of 12)	AluJr|SINE|Alu	4169	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
81631	chr16	10878751	10879980	+	0	NA	intron (NM_001379334, intron 1 of 19)	CpG	398	NM_001379334	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
85639	chr16	55712201	55712480	+	0	NA	Intergenic	Intergenic	-12585	NR_033740	390732		NR_033740		CES1P2	-	carboxylesterase 1 pseudogene 2	pseudo
131637	chr2	97092851	97093430	+	0	NA	intron (NM_001320848, intron 1 of 8)	intron (NM_001320848, intron 1 of 8)	1742	NM_199336	151313		NM_199336	ENSG00000144199	FAHD2B	-	fumarylacetoacetate hydrolase domain containing 2B	protein-coding
198555	chr6	106572321	106572580	+	0	NA	TTS (NM_001624)	TTS (NM_001624)	57048	NM_032730	84816		NM_032730	ENSG00000130347	RTN4IP1	NIMP|OPA10	reticulon 4 interacting protein 1	protein-coding
188291	chr5	151144871	151146330	+	0	NA	intron (NM_001363114, intron 2 of 24)	intron (NM_001363114, intron 2 of 24)	-3916	NM_001193544	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
201639	chr6	149467201	149467400	+	0	NA	intron (NM_207360, intron 2 of 5)	AluJr|SINE|Alu	17714	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
196346	chr6	43183371	43183800	+	0	NA	intron (NM_015089, intron 1 of 40)	intron (NM_015089, intron 1 of 40)	1389	NM_015089	23113		NM_015089	ENSG00000112659	CUL9	H7AP1|PARC	cullin 9	protein-coding
230698	chr9	128735701	128736130	+	0	NA	intron (NM_001375959, intron 12 of 14)	AluSz|SINE|Alu	11453	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
233983	chrX	2712101	2712500	+	0	NA	intron (NR_135623, intron 1 of 10)	L1MA8|LINE|L1	21005	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
100800	chr17	64049021	64049480	+	0	NA	intron (NM_001433, intron 17 of 21)	intron (NM_001433, intron 17 of 21)	-28616	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
106272	chr18	12411501	12411950	+	0	NA	intron (NM_006553, intron 1 of 6)	L1ME3Cz|LINE|L1	3796	NM_001142405	10650		NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding
45705	chr11	119080851	119081150	+	0	NA	intron (NR_165447, intron 14 of 15).2	intron (NR_165447, intron 14 of 15).2	-3877	NM_001258209	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
189103	chr5	170319171	170319530	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-6634	NR_147701	100128059		NR_147701	ENSG00000250274	LOC100128059	-	uncharacterized LOC100128059	ncRNA
226623	chr9	73175951	73176050	+	0	NA	Intergenic	AluSq|SINE|Alu	24135	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
98663	chr17	47836571	47836930	+	0	NA	TTS (NM_001145023)	TTS (NM_001145023)	4523	NM_001145023	90507		NM_138355	ENSG00000141295	SCRN2	Ses2	secernin 2	protein-coding
233212	chr9	137228771	137228930	+	0	NA	exon (NM_001190228, exon 3 of 3)	exon (NM_001190228, exon 3 of 3)	1348	NM_001190228	643596		NM_001190228	ENSG00000233198	RNF224	-	ring finger protein 224	protein-coding
159665	chr3	15367051	15367350	+	0	NA	Intergenic	Intergenic	-25820	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
18323	chr1	161181471	161181630	+	0	NA	Intergenic	AluJo|SINE|Alu	-3582	NM_001199873	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
66208	chr14	61292771	61292930	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-11512	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
236974	chrX	101399501	101399900	+	0	NA	intron (NM_000169, intron 4 of 6)	L2a|LINE|L2	8225	NM_000169	2717		NM_000169	ENSG00000102393	GLA	GALA	galactosidase alpha	protein-coding
36137	chr11	3125701	3125900	+	0	NA	intron (NM_145638, intron 3 of 20)	AluY|SINE|Alu	39510	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
15306	chr1	149855201	149855580	+	0	NA	intron (NR_168447, intron 1 of 1).2	(GT)n|Simple_repeat|Simple_repeat	2782	NM_001005464	333932		NM_001005464	ENSG00000203852	H3C15	H3/n|H3/o|H3C13|H3C14|HIST2H3A	H3 clustered histone 15	protein-coding
103914	chr17	79820971	79821230	+	0	NA	Intergenic	Intergenic	-2352	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
234300	chrX	13696651	13696950	+	0	NA	intron (NM_001195328, intron 1 of 1)	intron (NM_001195328, intron 1 of 1)	7672	NM_004251	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
32024	chr10	101014221	101015200	+	0	NA	intron (NM_001195263, intron 11 of 16)	(AC)n|Simple_repeat|Simple_repeat	12213	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
29292	chr10	69237321	69238000	+	0	NA	intron (NM_025130, intron 4 of 17)	intron (NM_025130, intron 4 of 17)	-5170	NR_120648	101928994		NR_120648	ENSG00000229261	LOC101928994	-	uncharacterized LOC101928994	ncRNA
117133	chr19	19274721	19275180	+	0	NA	Intergenic	Intergenic	-1649	NM_001001524	53345		NM_203510	ENSG00000213996	TM6SF2	-	transmembrane 6 superfamily member 2	protein-coding
160934	chr3	36895171	36895330	+	0	NA	intron (NM_014831, intron 4 of 22)	intron (NM_014831, intron 4 of 22)	49804	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
74750	chr15	63214001	63215080	+	0	NA	intron (NM_016530, intron 1 of 7)	AluSx|SINE|Alu	24934	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
18475	chr1	161618801	161619150	+	0	NA	Intergenic	MER11A|LTR|ERVK	12072	NM_001271036	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
129279	chr2	68425301	68425500	+	0	NA	Intergenic	Intergenic	41894	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
230666	chr9	128709951	128710250	+	0	NA	intron (NM_001317926, intron 6 of 21)	AluY|SINE|Alu	7597	NM_001317926	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
19729	chr1	181134401	181134880	+	0	NA	Intergenic	MIR3|SINE|MIR	-39844	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
89774	chr16	89468751	89469050	+	0	NA	intron (NM_001256182, intron 1 of 13)	L1MEc|LINE|L1	21661	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
146101	chr20	47679471	47679630	+	0	NA	intron (NM_198596, intron 7 of 20)	intron (NM_198596, intron 7 of 20)	106514	NM_018837	55959		NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding
138601	chr2	208254811	208255850	+	0	NA	promoter-TSS (NM_001282386)	promoter-TSS (NM_001282386)	97	NR_046452	100507475		NR_046452	ENSG00000231908	IDH1-AS1	-	IDH1 antisense RNA 1	ncRNA
109742	chr19	1106971	1107550	+	0	NA	TTS (NM_002085)	TTS (NM_002085)	2610	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
130160	chr2	75560521	75561000	+	0	NA	5' UTR (NM_001135032, exon 1 of 4)	5' UTR (NM_001135032, exon 1 of 4)	179	NM_001369525	84141		NM_032181	ENSG00000115363	EVA1A	FAM176A|TMEM166	eva-1 homolog A, regulator of programmed cell death	protein-coding
225571	chr9	35954801	35955200	+	0	NA	Intergenic	CR1-3_Croc|LINE|CR1	3154	NM_019897	56656		NM_019897	ENSG00000278889	OR2S2	OR37A|OST715	olfactory receptor family 2 subfamily S member 2	protein-coding
83494	chr16	27419071	27419230	+	0	NA	intron (NM_181079, intron 2 of 9)	AluSq2|SINE|Alu	-8121	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
108564	chr18	74950571	74950730	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	254863	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
15455	chr1	150337721	150337980	+	0	NA	intron (NR_146768, intron 7 of 15)	AluSp|SINE|Alu	16317	NM_004698	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
69223	chr14	92746971	92747130	+	0	NA	intron (NM_001008530, intron 1 of 14)	AluY|SINE|Alu	1577	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
212201	chr7	118153521	118153830	+	0	NA	Intergenic	Intergenic	-30489	NM_016200	51691		NM_016200	ENSG00000128534	LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding
222254	chr8	133238721	133238980	+	0	NA	3' UTR (NM_001135242, exon 16 of 16)	3' UTR (NM_001135242, exon 16 of 16)	47811	NM_080838	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
231563	chr9	131491621	131492630	+	0	NA	intron (NM_013318, intron 29 of 31)	intron (NM_013318, intron 29 of 31)	1639	NR_002914	26786		NR_002914	ENSG00000235284	SNORD62A	RNU62|U62|U62A	small nucleolar RNA, C/D box 62A	snoRNA
89615	chr16	89305851	89307400	+	0	NA	intron (NM_013275, intron 3 of 12)	CpG	10497	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
79027	chr16	66671	67130	+	0	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	5731	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
160078	chr3	18752601	18753200	+	0	NA	Intergenic	Intergenic	-307308	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
98009	chr17	45319501	45319700	+	0	NA	Intergenic	AmnSINE2|SINE|tRNA-Deu	-2580	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
126749	chr2	30230171	30231700	+	0	NA	promoter-TSS (NM_030915)	promoter-TSS (NM_030915)	-599	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
57872	chr12	123382221	123382850	+	0	NA	Intergenic	Intergenic	-1597	NM_001324505	387893		NM_020382	ENSG00000183955	KMT5A	PR-Set7|PR/SET07|SET07|SET8|SETD8	lysine methyltransferase 5A	protein-coding
138951	chr2	218254021	218254730	+	0	NA	TTS (NM_005731)	TTS (NM_005731)	-5121	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
134011	chr2	131032771	131032930	+	0	NA	intron (NM_001375904, intron 2 of 10)	AluJb|SINE|Alu	60312	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
203930	chr7	1535471	1536330	+	0	NA	intron (NM_002360, intron 1 of 2)	intron (NM_002360, intron 1 of 2)	-1020	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
156100	chr22	40074551	40074850	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluY|SINE|Alu	29883	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
236038	chrX	55487401	55487600	+	0	NA	exon (NM_201286, exon 2 of 2)	exon (NM_201286, exon 2 of 2)	1698	NM_201286	158880		NM_201286	ENSG00000247746	USP51	-	ubiquitin specific peptidase 51	protein-coding
84218	chr16	29959621	29959880	+	0	NA	Intergenic	AluSx|SINE|Alu	-2329	NR_161465	124446		NM_194280	ENSG00000149932	TMEM219	IGFBP-3R|IGFBP3R	transmembrane protein 219	protein-coding
65127	chr14	44960221	44960550	+	0	NA	intron (NM_017658, intron 1 of 4)	intron (NM_017658, intron 1 of 4)	1100	NM_001308112	54813		NM_017658	ENSG00000179454	KLHL28	BTBD5	kelch like family member 28	protein-coding
127159	chr2	37934871	37935480	+	0	NA	intron (NM_001322211, intron 2 of 10)	intron (NM_001322211, intron 2 of 10)	6416	NM_001170792	151393		NM_144713	ENSG00000115841	RMDN2	BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
119486	chr19	40457851	40458150	+	0	NA	intron (NM_000713, intron 3 of 4)	L2b|LINE|L2	7745	NM_000713	645		NM_000713	ENSG00000090013	BLVRB	BVRB|FLR|HEL-S-10|SDR43U1	biliverdin reductase B	protein-coding
43462	chr11	78080801	78081180	+	0	NA	Intergenic	LTR7C|LTR|ERV1	-1128	NM_004549	4718		NM_004549	ENSG00000151366	NDUFC2	B14.5b|CI-B14.5b|HLC-1|MC1DN36|NADHDH2	NADH:ubiquinone oxidoreductase subunit C2	protein-coding
90181	chr17	340521	340780	+	0	NA	intron (NM_006987, intron 1 of 9).2	intron (NM_006987, intron 1 of 9).2	9131	NR_164141	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
212080	chr7	115136051	115136500	+	0	NA	intron (NR_126407, intron 2 of 4)	MER44A|DNA|TcMar-Tigger	57317	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
102581	chr17	75878601	75879350	+	0	NA	promoter-TSS (NM_033452)	promoter-TSS (NM_033452)	-394	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
133382	chr2	118089201	118089880	+	0	NA	intron (NM_001321332, intron 1 of 5)	intron (NM_001321332, intron 1 of 5)	990	NM_001321329	51141		NM_016133	ENSG00000125629	INSIG2	INSIG-2	insulin induced gene 2	protein-coding
128582	chr2	60910321	60911100	+	0	NA	intron (NM_001291746, intron 4 of 9)	AluSz|SINE|Alu	29136	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
140742	chr2	234478301	234478800	+	0	NA	Intergenic	Intergenic	18499	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
39852	chr11	62379571	62379730	+	0	NA	intron (NM_001083926, intron 4 of 6)	HERVK-int|LTR|ERVK	-39383	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
58436	chr12	131948201	131949000	+	0	NA	Intergenic	AluJb|SINE|Alu	-1342	NM_015409	57634		NM_015409	ENSG00000183495	EP400	CAGH32|P400|TNRC12	E1A binding protein p400	protein-coding
6905	chr1	31617551	31618500	+	0	NA	intron (NM_001525, intron 1 of 8)	CpG	336	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
34230	chr10	130107801	130108400	+	0	NA	non-coding (NR_044994, exon 1 of 1)	non-coding (NR_044994, exon 1 of 1)	2091	NR_044994	119437		NR_044994	ENSG00000233122	CTAGE7P	CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5	CTAGE family member 7, pseudogene	pseudo
38461	chr11	45650421	45650680	+	0	NA	exon (NM_003654, exon 4 of 4)	exon (NM_003654, exon 4 of 4)	15072	NM_003654	8534		NM_003654	ENSG00000175264	CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate sulfotransferase 1	protein-coding
187568	chr5	142794001	142794380	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	22963	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
64467	chr14	24264251	24264550	+	0	NA	Intergenic	Intergenic	-1223	NM_000359	7051		NM_000359	ENSG00000092295	TGM1	ARCI1|ICR2|KTG|LI|LI1|TGASE|TGK	transglutaminase 1	protein-coding
201701	chr6	149702171	149702330	+	0	NA	non-coding (NR_073033, exon 2 of 9)	non-coding (NR_073033, exon 2 of 9)	14175	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
112337	chr19	5916551	5917200	+	0	NA	TTS (NM_004058)	TTS (NM_004058)	2621	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
97125	chr17	42534621	42535080	+	0	NA	Intergenic	AluY|SINE|Alu	-1391	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
15937	chr1	151823121	151823380	+	0	NA	intron (NM_005060, intron 2 of 10)	intron (NM_005060, intron 2 of 10)	2846	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
874	chr1	1628651	1631100	+	0	NA	intron (NM_080875, intron 19 of 19)	CpG-125	-2298	NM_006983	8510		NM_006983	ENSG00000189409	MMP23B	MIFR|MIFR-1|MMP22|MMP23A	matrix metallopeptidase 23B	protein-coding
193811	chr6	31461351	31461450	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1780	NR_040662	10866		NR_040662	ENSG00000206337	HCP5	6S2650E|D6S2650E|P5-1	HLA complex P5	ncRNA
76379	chr15	74610051	74610800	+	0	NA	intron (NM_003992, intron 1 of 12)	intron (NM_003992, intron 1 of 12)	2053	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
90888	chr17	2391671	2395330	+	0	NA	intron (NM_020310, intron 4 of 5)	CpG	7560	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
121512	chr19	47189321	47189600	+	0	NA	intron (NM_001145713, intron 6 of 6)	AluSg|SINE|Alu	-37482	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
114769	chr19	13733401	13733630	+	0	NA	intron (NM_001320561, intron 2 of 10)	AluSp|SINE|Alu	1763	NM_001320564	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
172473	chr4	2058201	2058600	+	0	NA	promoter-TSS (NM_178557)	promoter-TSS (NM_178557)	-927	NM_178557	339983		NM_178557	ENSG00000185818	NAT8L	CML3|NACED|NAT8-LIKE	N-acetyltransferase 8 like	protein-coding
144419	chr20	35329571	35329830	+	0	NA	intron (NM_018244, intron 7 of 9)	intron (NM_018244, intron 7 of 9)	-37275	NM_178468	128876		NM_178468	ENSG00000125998	FAM83C	C20orf128|dJ614O4.7	family with sequence similarity 83 member C	protein-coding
38800	chr11	47272121	47272380	+	0	NA	promoter-TSS (NR_120569)	promoter-TSS (NR_120569)	-140	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
147466	chr20	59047871	59048230	+	0	NA	Intergenic	L2b|LINE|L2	-5204	NR_037929	100533975		NR_037929		SLMO2-ATP5E	-	SLMO2-ATP5E readthrough	ncRNA
7515	chr1	33473751	33474180	+	0	NA	intron (NM_001377379, intron 1 of 6)	intron (NM_001377379, intron 1 of 6)	1320	NM_001377376	7579		NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
80650	chr16	3000351	3000980	+	0	NA	intron (NR_110947, intron 5 of 5)	intron (NR_110947, intron 5 of 5)	1710	NR_110949	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
138865	chr2	216696601	216697000	+	0	NA	Intergenic	Intergenic	-1251	NM_000599	3488		NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
157796	chr22	46774501	46775350	+	0	NA	intron (NM_001284305, intron 1 of 12)	intron (NM_001284305, intron 1 of 12)	998	NM_001284305	25771		NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding
117716	chr19	29294071	29294700	+	0	NA	intron (NR_040029, intron 9 of 9)	MIRb|SINE|MIR	-81234	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
122057	chr19	48670701	48671100	+	0	NA	exon (NM_145807, exon 2 of 7)	exon (NM_145807, exon 2 of 7)	2117	NM_145807	126147		NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
193536	chr6	30599451	30600880	+	0	NA	TTS (NR_072994).7	TTS (NR_072994).7	15833	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
182768	chr5	68304451	68305050	+	0	NA	Intergenic	Intergenic	12173	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
93305	chr17	18160521	18160780	+	0	NA	intron (NM_016239, intron 55 of 64)	MLT1K|LTR|ERVL-MaLR	-23178	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
230283	chr9	127935001	127935200	+	0	NA	TTS (NM_003863)	TTS (NM_003863)	2754	NR_165632	8818		NM_003863	ENSG00000136908	DPM2	CDG1U	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein-coding
170854	chr3	191290421	191290680	+	0	NA	intron (NM_198152, intron 4 of 8)	intron (NM_198152, intron 4 of 8)	-38844	NM_178335	152137		NM_174908	ENSG00000152492	CCDC50	C3orf6|DFNA44|YMER	coiled-coil domain containing 50	protein-coding
185601	chr5	131412971	131413430	+	0	NA	Intergenic	AluJb|SINE|Alu	149147	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
129246	chr2	68364921	68365520	+	0	NA	promoter-TSS (NM_002664)	promoter-TSS (NM_002664)	-62	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
124102	chr19	55651921	55652350	+	0	NA	intron (NM_001370467, intron 5 of 5)	intron (NM_001370467, intron 5 of 5)	-2900	NM_007279	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
230912	chr9	129269901	129271400	+	0	NA	Intergenic	AluSz|SINE|Alu	-11766	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
218706	chr8	58584551	58584850	+	0	NA	intron (NM_003580, intron 30 of 30)	AluJr|SINE|Alu	31439	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
166456	chr3	114213121	114214500	+	0	NA	Intergenic	Intergenic	-14403	NM_001282563	1814		NM_000796	ENSG00000151577	DRD3	D3DR|ETM1|FET1	dopamine receptor D3	protein-coding
140411	chr2	233099771	233101350	+	0	NA	intron (NM_001017915, intron 2 of 26).2	L3|LINE|CR1	40218	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
82737	chr16	21359971	21360130	+	0	NA	intron (NR_045011, intron 2 of 5)	intron (NR_045011, intron 2 of 5)	10687	NR_045011	100652781		NM_001012391		SNX29P1	RUNDC2B|RUNDC2L	sorting nexin 29 pseudogene 1	pseudo
73913	chr15	50767371	50767980	+	0	NA	Intergenic	L2c|LINE|L2	-1969	NM_032802	84888		NM_032802	ENSG00000138600	SPPL2A	IMD86|IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
173610	chr4	10983351	10983450	+	0	NA	Intergenic	Intergenic	-298632	NM_052964	116449		NM_052964	ENSG00000109684	CLNK	MIST	cytokine dependent hematopoietic cell linker	protein-coding
107781	chr18	51053801	51054200	+	0	NA	intron (NM_005359, intron 4 of 11)	intron (NM_005359, intron 4 of 11)	23787	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
110761	chr19	2383601	2383800	+	0	NA	Intergenic	AluJr|SINE|Alu	-1565	NM_182973	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
91853	chr17	7220841	7222000	+	0	NA	intron (NM_001033859, intron 5 of 18)	intron (NM_001033859, intron 5 of 18)	-1370	NR_135527	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
76177	chr15	73141151	73141650	+	0	NA	intron (NM_001172623, intron 5 of 27)	intron (NM_001172623, intron 5 of 27)	88916	NM_001172623	4756		NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
21164	chr1	203756421	203757430	+	0	NA	Intergenic	L2c|LINE|L2	-8258	NM_001136190	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
100214	chr17	59161871	59162630	+	0	NA	intron (NM_018304, intron 1 of 9)	(AC)n|Simple_repeat|Simple_repeat	6504	NM_018304	55771		NM_018304	ENSG00000068489	PRR11	-	proline rich 11	protein-coding
75594	chr15	67095771	67096280	+	0	NA	intron (NM_005902, intron 1 of 8)	MER45B|DNA|hAT-Tip100	-29691	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
112516	chr19	6483451	6484480	+	0	NA	Intergenic	AluSp|SINE|Alu	-2178	NM_024898	79958		NM_024898	ENSG00000205744	DENND1C	FAM31C	DENN domain containing 1C	protein-coding
185951	chr5	133020721	133020980	+	0	NA	intron (NR_131766, intron 1 of 4)	AluY|SINE|Alu	5699	NM_001300818	54819		NM_017665	ENSG00000155329	ZCCHC10	-	zinc finger CCHC-type containing 10	protein-coding
152596	chr22	21325301	21325880	+	0	NA	intron (NR_136559, intron 1 of 11)	HSATI|Satellite|Satellite	1046	NR_136559	100996335		NR_136559	ENSG00000206142	FAM230H	-	family with sequence similarity 230 member H	ncRNA
150410	chr21	42385051	42385350	+	0	NA	intron (NM_024022, intron 6 of 12)	intron (NM_024022, intron 6 of 12)	3949	NM_032404	64699		NM_024022	ENSG00000160183	TMPRSS3	DFNB10|DFNB8|ECHOS1|TADG12	transmembrane serine protease 3	protein-coding
164754	chr3	69081221	69082130	+	0	NA	Intergenic	Intergenic	-1302	NM_001363861	9039		NM_003968	ENSG00000144744	UBA3	NAE2|UBE1C|hUBA3	ubiquitin like modifier activating enzyme 3	protein-coding
110490	chr19	2037751	2038050	+	0	NA	3' UTR (NM_199054, exon 14 of 14)	3' UTR (NM_199054, exon 14 of 14)	13344	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
18093	chr1	160690321	160690650	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK11-int|LTR|ERVK	21337	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
49551	chr12	26826501	26826700	+	0	NA	intron (NM_002223, intron 1 of 56)	intron (NM_002223, intron 1 of 56)	6594	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
180838	chr5	32545401	32545600	+	0	NA	Intergenic	Intergenic	-40057	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
196379	chr6	43254801	43255000	+	0	NA	intron (NM_032538, intron 6 of 14)	intron (NM_032538, intron 6 of 14)	11419	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
112831	chr19	7527321	7528200	+	0	NA	intron (NM_020533, intron 5 of 13)	intron (NM_020533, intron 5 of 13)	5136	NM_020533	57192		NM_020533	ENSG00000090674	MCOLN1	LECD|MG-2|ML1|ML4|MLIV|MST080|MSTP080|TRP-ML1|TRPM-L1|TRPML1	mucolipin TRP cation channel 1	protein-coding
66186	chr14	60724971	60725880	+	0	NA	Intergenic	AluY|SINE|Alu	-1074	NM_017420	51804		NM_017420	ENSG00000100625	SIX4	AREC3	SIX homeobox 4	protein-coding
160162	chr3	21255151	21255250	+	0	NA	Intergenic	L1PA2|LINE|L1	-150526	NR_002311	391518		NR_002311		VENTXP7	HPX42|VENTX1	VENT homeobox pseudogene 7	pseudo
109597	chr19	926661	927530	+	0	NA	intron (NM_005224, intron 1 of 8)	intron (NM_005224, intron 1 of 8)	1060	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
9474	chr1	50929321	50929700	+	0	NA	intron (NM_007051, intron 1 of 18)	intron (NM_007051, intron 1 of 18)	30757	NM_007051	11124		NM_007051	ENSG00000185104	FAF1	CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1	Fas associated factor 1	protein-coding
193317	chr6	30116721	30117000	+	0	NA	Intergenic	L1ME3G|LINE|L1	-3770	NM_007028	11074		NM_007028	ENSG00000204616	TRIM31	C6orf13|HCG1|HCGI|RNF	tripartite motif containing 31	protein-coding
163234	chr3	50266001	50266480	+	0	NA	TTS (NR_110702)	TTS (NR_110702)	1131	NR_110702	101928931		NR_110702		SEMA3B-AS1	-	SEMA3B antisense RNA 1 (head to head)	ncRNA
32394	chr10	102429501	102429700	+	0	NA	intron (NM_024040, intron 1 of 8)	intron (NM_024040, intron 1 of 8)	2974	NM_024040	79004		NM_024040	ENSG00000107874	CUEDC2	C10orf66|bA18I14.5	CUE domain containing 2	protein-coding
40212	chr11	63518351	63519050	+	0	NA	Intergenic	L1PA16|LINE|L1	10713	NM_001142537	85329		NM_033101	ENSG00000133317	LGALS12	GAL12|GRIP1	galectin 12	protein-coding
61321	chr13	50387101	50387380	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	140209	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
200017	chr6	129575271	129575700	+	0	NA	TTS (NM_033515)	TTS (NM_033515)	134692	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
65329	chr14	50119301	50119780	+	0	NA	intron (NM_006939, intron 22 of 22)	AluSx1|SINE|Alu	-2968	NR_049739	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
44835	chr11	114072801	114073000	+	0	NA	intron (NM_001354751, intron 2 of 6)	AluY|SINE|Alu	9689	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
130019	chr2	74203851	74204150	+	0	NA	intron (NR_027405, intron 2 of 8)	AluSz|SINE|Alu	5385	NM_006636	10797		NM_006636	ENSG00000065911	MTHFD2	NMDMC	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	protein-coding
99485	chr17	50185621	50186580	+	0	NA	intron (NM_000088, intron 49 of 50)	intron (NM_000088, intron 49 of 50)	-13624	NR_024192	373861		NM_194072		H1-9P	H1-9|H1.9|HILS1	H1.9 linker histone, pseudogene	pseudo
178548	chr4	151102501	151103100	+	0	NA	TTS (NR_145963)	TTS (NR_145963)	743	NR_145963	114655		NR_145963	ENSG00000201264	SNORD73B	RNU73B|U73B	small nucleolar RNA, C/D box U73B	snoRNA
89254	chr16	88653661	88654900	+	0	NA	intron (NM_002461, intron 8 of 9)	intron (NM_002461, intron 8 of 9)	-3227	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
164903	chr3	71124721	71124980	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	5736	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
109411	chr19	683371	684200	+	0	NA	TTS (NM_005860)	TTS (NM_005860)	7393	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
89432	chr16	88940921	88941180	+	0	NA	5' UTR (NM_175931, exon 1 of 11)	5' UTR (NM_175931, exon 1 of 11)	300	NM_175931	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
120963	chr19	45706751	45707480	+	0	NA	Intergenic	Intergenic	8163	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
48205	chr12	8083701	8083930	+	0	NA	intron (NR_024260, intron 1 of 6)	AluJr4|SINE|Alu	1541	NM_015509	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
92564	chr17	9001951	9002430	+	0	NA	Intergenic	Intergenic	-19320	NM_004822	9423		NM_004822	ENSG00000065320	NTN1	MRMV4|NET1|NTN1L	netrin 1	protein-coding
149214	chr21	25456321	25456890	+	0	NA	Intergenic	Intergenic	-24904	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
237611	chrX	123982071	123983130	+	0	NA	intron (NM_001282418, intron 2 of 33)	AluSz|SINE|Alu	20894	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
50606	chr12	48674401	48674600	+	0	NA	intron (NM_017822, intron 4 of 9)	intron (NM_017822, intron 4 of 9)	-6907	NR_002951	677794		NR_002951	ENSG00000207313	SNORA2B	ACA2b	small nucleolar RNA, H/ACA box 2B	snoRNA
3813	chr1	16758401	16758600	+	0	NA	exon (NM_001271733, exon 11 of 15)	exon (NM_001271733, exon 11 of 15)	5980	NM_001271733	11223		NM_001271733	ENSG00000186715	MST1L	BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P|MST1P7|MST1P9|MSTP7|MSTP9	macrophage stimulating 1 like (pseudogene)	pseudo
185865	chr5	132555071	132555630	+	0	NA	Intergenic	L1MB3|LINE|L1	-1627	NM_005732	10111		NM_005732	ENSG00000113522	RAD50	NBSLD|RAD502|hRad50	RAD50 double strand break repair protein	protein-coding
155539	chr22	38710471	38710630	+	0	NA	intron (NM_004286, intron 2 of 11)	L2|LINE|L2	4606	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
53928	chr12	71746771	71747730	+	0	NA	Intergenic	Intergenic	-7613	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
164653	chr3	66499801	66502130	+	0	NA	promoter-TSS (NM_015541)	promoter-TSS (NM_015541)	57	NM_001377344	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
163380	chr3	50491101	50491300	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	12434	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
140597	chr2	233387621	233388330	+	0	NA	promoter-TSS (NM_003648)	promoter-TSS (NM_003648)	-179	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
33500	chr10	119134021	119134480	+	0	NA	intron (NM_207009, intron 8 of 8)	AluSx1|SINE|Alu	30137	NM_001303111	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
23234	chr1	227766001	227767580	+	0	NA	intron (NR_136654, intron 2 of 3)	intron (NR_136654, intron 2 of 3)	-20022	NR_168381	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
134884	chr2	148881751	148881850	+	0	NA	intron (NM_004522, intron 1 of 25)	intron (NM_004522, intron 1 of 25)	6573	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
132015	chr2	100642171	100643000	+	0	NA	Intergenic	Intergenic	38846	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
54481	chr12	92038321	92039250	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	102928	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
211860	chr7	111011601	111012180	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-79116	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
36339	chr11	3895101	3895330	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	39153	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
197424	chr6	73587301	73587680	+	0	NA	Intergenic	AluJr|SINE|Alu	-66458	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
180467	chr5	10762701	10763100	+	0	NA	Intergenic	L2a|LINE|L2	-1666	NM_001291963	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
198632	chr6	107787021	107788250	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	36678	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
225820	chr9	37776751	37777300	+	0	NA	intron (NM_001286954, intron 7 of 7)	AluSp|SINE|Alu	8039	NM_016042	51010		NM_016042	ENSG00000107371	EXOSC3	CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10	exosome component 3	protein-coding
185739	chr5	132099071	132100000	+	0	NA	Intergenic	MIRb|SINE|MIR	25746	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
130313	chr2	84961021	84961280	+	0	NA	Intergenic	Intergenic	-10011	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
113157	chr19	8352601	8353200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9638	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
47297	chr12	1664921	1665850	+	0	NA	Intergenic	Intergenic	-5005	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
204813	chr7	5681971	5682550	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-1799	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
69706	chr14	98189001	98190330	+	0	NA	Intergenic	Intergenic	-211541	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
70809	chr14	103548201	103548400	+	0	NA	Intergenic	Intergenic	14020	NM_001015049	9529		NM_004873	ENSG00000166170	BAG5	BAG-5|CMD2F	BAG cochaperone 5	protein-coding
223180	chr8	143559671	143560130	+	0	NA	exon (NM_024736, exon 3 of 11)	exon (NM_024736, exon 3 of 11)	1554	NM_024736	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
51533	chr12	52308101	52308730	+	0	NA	exon (NM_001320198, exon 11 of 11)	exon (NM_001320198, exon 11 of 11)	12983	NM_002282	3889		NM_002282	ENSG00000170523	KRT83	EKVP5|HB3|Hb-3|KRTHB3|MNLIX	keratin 83	protein-coding
123686	chr19	55009901	55010100	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	28264	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
74270	chr15	57217851	57217950	+	0	NA	intron (NM_207038, intron 8 of 19)	intron (NM_207038, intron 8 of 19)	-1530	NM_001306220	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
40724	chr11	64808821	64809080	+	0	NA	intron (NM_001370259, intron 2 of 9)	AluY|SINE|Alu	1601	NM_001370262	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
23452	chr1	228465701	228466130	+	0	NA	Intergenic	L2b|LINE|L2	3841	NR_039812	100616308		NR_039812	ENSG00000266174	MIR4666A	MIR4666|hsa-mir-4666a	microRNA 4666a	ncRNA
214205	chr7	148696001	148696550	+	0	NA	Intergenic	Intergenic	-1481	NM_001370660	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
95140	chr17	35056621	35057080	+	0	NA	intron (NR_037713, intron 1 of 6)	L2c|LINE|L2	6857	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
217364	chr8	27895971	27896350	+	0	NA	intron (NM_173833, intron 7 of 8)	intron (NM_173833, intron 7 of 8)	-10044	NR_036249	100422828		NR_036249	ENSG00000265847	MIR4287	-	microRNA 4287	ncRNA
136926	chr2	189791351	189792180	+	0	NA	intron (NR_110332, intron 2 of 12)	intron (NR_110332, intron 2 of 12)	7315	NM_001128143	5378		NM_000534	ENSG00000064933	PMS1	HNPCC3|MLH2|PMSL1|hPMS1	PMS1 homolog 1, mismatch repair system component	protein-coding
52505	chr12	56039921	56040650	+	0	NA	Intergenic	Intergenic	-1633	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
1244	chr1	2288351	2288730	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	60221	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
200384	chr6	134272321	134272780	+	0	NA	intron (NM_001143676, intron 1 of 13)	intron (NM_001143676, intron 1 of 13)	45508	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
178989	chr4	163492701	163493100	+	0	NA	Intergenic	Intergenic	-1790	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
193084	chr6	28841321	28841780	+	0	NA	Intergenic	AluSx1|SINE|Alu	22127	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
30746	chr10	84190601	84191500	+	0	NA	Intergenic	Intergenic	-3487	NM_001171971	92211		NM_033100	ENSG00000148600	CDHR1	CORD15|PCDH21|PRCAD|RP65	cadherin related family member 1	protein-coding
135291	chr2	160197751	160197850	+	0	NA	intron (NM_001282390, intron 1 of 13)	intron (NM_001282390, intron 1 of 13)	2472	NM_001282390	3694		NM_000888	ENSG00000115221	ITGB6	AI1H	integrin subunit beta 6	protein-coding
28380	chr10	47309601	47310180	+	0	NA	exon (NM_004962, exon 2 of 3)	exon (NM_004962, exon 2 of 3)	9693	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
182796	chr5	68712551	68712730	+	0	NA	Intergenic	Intergenic	317287	NR_130778	101928885		NR_130778		LINC02198	-	long intergenic non-protein coding RNA 2198	ncRNA
207115	chr7	42105801	42106000	+	0	NA	intron (NM_000168, intron 3 of 14)	intron (NM_000168, intron 3 of 14)	131309	NM_000168	2737		NM_000168	ENSG00000106571	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
31048	chr10	88935121	88936080	+	0	NA	intron (NR_125373, intron 3 of 4)	intron (NR_125373, intron 3 of 4)	2916	NR_125373	100132116		NR_125373	ENSG00000180139	ACTA2-AS1	UC001kfo|ZXF1|uc001kfo.1	ACTA2 antisense RNA 1	ncRNA
79397	chr16	665871	666380	+	0	NA	intron (NM_145294, intron 36 of 40)	intron (NM_145294, intron 36 of 40)	-1958	NM_001352287	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
72145	chr15	29045621	29045920	+	0	NA	intron (NM_001353793, intron 2 of 12).2	intron (NM_001353793, intron 2 of 12).2	-24888	NM_001353797	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
87990	chr16	80693571	80693730	+	0	NA	intron (NM_152342, intron 1 of 6)	L1MD3|LINE|L1	110948	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
94513	chr17	29395551	29395650	+	0	NA	intron (NM_025142, intron 1 of 17)	intron (NM_025142, intron 1 of 17)	4675	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
139188	chr2	219224021	219224800	+	0	NA	exon (NM_001077198, exon 8 of 16)	exon (NM_001077198, exon 8 of 16)	5226	NM_024085	79065		NM_024085	ENSG00000198925	ATG9A	APG9L1|MGD3208|mATG9	autophagy related 9A	protein-coding
53364	chr12	64662021	64662850	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJb|SINE|Alu	-39830	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
175071	chr4	54061101	54062050	+	0	NA	intron (NM_012110, intron 1 of 5)	intron (NM_012110, intron 1 of 5)	3030	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
126776	chr2	30257701	30258580	+	0	NA	3' UTR (NM_030915, exon 3 of 3)	3' UTR (NM_030915, exon 3 of 3)	26606	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
102306	chr17	75351221	75351480	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	54328	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
171919	chr4	852501	852900	+	0	NA	intron (NM_001318134, intron 21 of 24)	AluY|SINE|Alu	-26571	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
104585	chr17	81390671	81390930	+	0	NA	Intergenic	Intergenic	-4657	NM_001377448	57597		NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
124474	chr19	58546851	58547150	+	0	NA	intron (NM_005762, intron 3 of 16)	intron (NM_005762, intron 3 of 16)	2936	NM_005762	10155		NM_005762	ENSG00000130726	TRIM28	KAP1|PPP1R157|RNF96|TF1B|TIF1B|TIF1beta	tripartite motif containing 28	protein-coding
196073	chr6	42260701	42261700	+	0	NA	intron (NM_033502, intron 8 of 17)	intron (NM_033502, intron 8 of 17)	-43339	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
78088	chr15	90233001	90234550	+	0	NA	promoter-TSS (NM_001322811)	promoter-TSS (NM_001322811)	166	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
220362	chr8	99716001	99716230	+	0	NA	intron (NM_152564, intron 36 of 61)	intron (NM_152564, intron 36 of 61)	177592	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
152568	chr22	21056671	21056830	+	0	NA	intron (NM_001291006, intron 7 of 9)	intron (NM_001291006, intron 7 of 9)	10804	NR_027006	400891		NM_001013675	ENSG00000187905	LRRC74B	-	leucine rich repeat containing 74B	protein-coding
4159	chr1	19370251	19370950	+	0	NA	intron (NM_001206540, intron 4 of 9)	MER68|LTR|ERVL	58274	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
87965	chr16	80518271	80519080	+	0	NA	intron (NR_120307, intron 2 of 5)	Tigger9b|DNA|TcMar-Tigger	-22059	NM_001305017	83657		NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein light chain roadblock-type 2	protein-coding
159307	chr3	13000571	13001280	+	0	NA	intron (NM_001134382, intron 1 of 13)	MIRb|SINE|MIR	-13824	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
96798	chr17	41869621	41869880	+	0	NA	intron (NM_001096, intron 25 of 28)	intron (NM_001096, intron 25 of 28)	-4327	NM_018143	55175		NM_018143	ENSG00000178502	KLHL11	-	kelch like family member 11	protein-coding
93456	chr17	18695301	18695500	+	0	NA	Intergenic	L1M2c|LINE|L1	-2598	NM_001353221	147166		NM_001037330	ENSG00000291110	TRIM16L	TRIM70	tripartite motif containing 16 like (pseudogene)	pseudo
200230	chr6	131597301	131597750	+	0	NA	intron (NM_001376524, intron 18 of 26)	intron (NM_001376524, intron 18 of 26)	24299	NM_001369020	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
76925	chr15	78056521	78057550	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	20617	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
110389	chr19	1935321	1936130	+	0	NA	Intergenic	Intergenic	-5447	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
224850	chr9	27888751	27888850	+	0	NA	Intergenic	Intergenic	-314934	NM_001256054	203228		NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1	C9orf72-SMCR8 complex subunit	protein-coding
107369	chr18	45997321	45999500	+	0	NA	intron (NM_024430, intron 8 of 14)	intron (NM_024430, intron 8 of 14)	-31081	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
237367	chrX	118976121	118977100	+	0	NA	5' UTR (NM_001289109, exon 1 of 12)	5' UTR (NM_001289109, exon 1 of 12)	278	NM_001289109	79836		NM_024778	ENSG00000175556	LONRF3	RNF127	LON peptidase N-terminal domain and ring finger 3	protein-coding
22039	chr1	210397301	210397650	+	0	NA	intron (NM_001170564, intron 4 of 9).2	intron (NM_001170564, intron 4 of 9).2	68109	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
128878	chr2	64091971	64092130	+	0	NA	TTS (NM_020651)	TTS (NM_020651)	52370	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
104316	chr17	80930051	80930580	+	0	NA	intron (NM_020761, intron 24 of 33)	(CAGCT)n|Simple_repeat|Simple_repeat	40898	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
12897	chr1	110359751	110359850	+	0	NA	Intergenic	MIRc|SINE|MIR	20423	NM_022768	64783		NM_014092	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding
35760	chr11	2147421	2148450	+	0	NA	non-coding (NR_133657, exon 3 of 3)	non-coding (NR_133657, exon 3 of 3)	1668	NM_001007139	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
72644	chr15	38493421	38493680	+	0	NA	intron (NM_001306086, intron 14 of 14)	intron (NM_001306086, intron 14 of 14)	39423	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
105590	chr18	514001	514430	+	0	NA	intron (NR_136505, intron 2 of 2)	AluSx|SINE|Alu	1079	NR_136505	105376854		NR_136505	ENSG00000264265	LINC01925	-	long intergenic non-protein coding RNA 1925	ncRNA
215091	chr7	155188451	155188550	+	0	NA	Intergenic	Intergenic	-109272	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
201715	chr6	149728221	149728880	+	0	NA	intron (NM_198887, intron 7 of 7)	intron (NM_198887, intron 7 of 7)	-10294	NM_001270519	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
183229	chr5	76339651	76339750	+	0	NA	intron (NM_001297716, intron 12 of 12)	AluY|SINE|Alu	-63585	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
52402	chr12	55744951	55745250	+	0	NA	intron (NM_005811, intron 1 of 2)	intron (NM_005811, intron 1 of 2)	1978	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
133154	chr2	112705951	112706650	+	0	NA	Intergenic	Intergenic	-15186	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
230531	chr9	128363421	128363680	+	0	NA	intron (NR_031672, intron 2 of 2).4	L2b|LINE|L2	-7769	NM_001135947	81605		NM_030914	ENSG00000167118	URM1	C9orf74	ubiquitin related modifier 1	protein-coding
145978	chr20	46355601	46356000	+	0	NA	intron (NM_173179, intron 5 of 9)	intron (NM_173179, intron 5 of 9)	8625	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
14587	chr1	145194971	145195330	+	0	NA	intron (NR_156690, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	-19701	NR_148945	100996740		NR_148945		LOC100996740	-	uncharacterized LOC100996740	ncRNA
41214	chr11	65661551	65662000	+	0	NA	exon (NM_001243985, exon 4 of 12)	exon (NM_001243985, exon 4 of 12)	1141	NM_021975	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
195146	chr6	35716301	35716500	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	12183	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
35795	chr11	2193371	2194130	+	0	NA	Intergenic	Intergenic	20687	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
193805	chr6	31442571	31442880	+	0	NA	intron (NR_144465, intron 1 of 1)	intron (NR_144465, intron 1 of 1)	1058	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
23555	chr1	229326251	229326950	+	0	NA	intron (NM_145257, intron 3 of 3)	intron (NM_145257, intron 3 of 3)	16447	NM_145257	126731		NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
166571	chr3	115819471	115820280	+	0	NA	intron (NM_001318915, intron 7 of 8)	intron (NM_001318915, intron 7 of 8)	85251	NR_145779	109623450		NR_145779		SNORD155	-	small nucleolar RNA, C/D box 155	snoRNA
208785	chr7	73581821	73582330	+	0	NA	Intergenic	Intergenic	-3496	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
230816	chr9	129034051	129034550	+	0	NA	Intergenic	Intergenic	-2326	NR_138422	84895		NM_032809	ENSG00000148343	MIGA2	C9orf54|FAM73B	mitoguardin 2	protein-coding
20162	chr1	192808201	192809630	+	0	NA	promoter-TSS (NM_002923)	promoter-TSS (NM_002923)	-124	NM_002923	5997		NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G protein signaling 2	protein-coding
58078	chr12	124556221	124556480	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	11262	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
6643	chr1	28934851	28935550	+	0	NA	intron (NM_001376013, intron 1 of 20)	AluSz6|SINE|Alu	20624	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
114887	chr19	13889051	13889150	+	0	NA	intron (NM_001345848, intron 5 of 7)	intron (NM_001345848, intron 5 of 7)	11851	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
199058	chr6	111536901	111537100	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	30279	NM_001164283	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
74471	chr15	59798151	59798250	+	0	NA	Intergenic	L1M7|LINE|L1	-108880	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
46958	chr11	134584201	134584400	+	0	NA	Intergenic	Intergenic	147818	NR_033852	283177		NR_033852	ENSG00000255545	B3GAT1-DT	-	B3GAT1 divergent transcript	ncRNA
71446	chr14	105686601	105686800	+	0	NA	Intergenic	Intergenic	-13893	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
131418	chr2	96285051	96285350	+	0	NA	exon (NM_014014, exon 30 of 45)	exon (NM_014014, exon 30 of 45)	18975	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
146115	chr20	48449821	48450380	+	0	NA	Intergenic	(GATGG)n|Simple_repeat|Simple_repeat	90189	NR_026958	284749		NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
138615	chr2	209425501	209425750	+	0	NA	intron (NM_001375502, intron 1 of 14)	intron (NM_001375502, intron 1 of 14)	1578	NM_001375498	4133		NM_002374	ENSG00000078018	MAP2	MAP-2|MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
202803	chr6	159151001	159151500	+	0	NA	Intergenic	Intergenic	-18150	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
212215	chr7	120800751	120800850	+	0	NA	intron (NM_012338, intron 7 of 7)	AluSz|SINE|Alu	57344	NM_012338	23554		NM_012338	ENSG00000106025	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
193661	chr6	30913151	30913250	+	0	NA	intron (NM_001517, intron 12 of 13).4	intron (NM_001517, intron 12 of 13).4	-1008	NM_001167733	57176		NM_020442	ENSG00000137411	VARS2	COXPD20|VALRS|VARS2L|VARSL	valyl-tRNA synthetase 2, mitochondrial	protein-coding
192032	chr6	16447371	16447530	+	0	NA	intron (NM_000332, intron 7 of 8)	AluSx1|SINE|Alu	208863	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
59707	chr13	29597251	29597350	+	0	NA	Intergenic	FRAM|SINE|Alu	-1612	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
81511	chr16	8965951	8966450	+	0	NA	Intergenic	Intergenic	-2294	NM_003470	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
85519	chr16	50780901	50781750	+	0	NA	exon (NM_001378753, exon 9 of 18)	exon (NM_001378753, exon 9 of 18)	-25347	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
163499	chr3	51380901	51381630	+	0	NA	exon (NM_004947, exon 53 of 53)	exon (NM_004947, exon 53 of 53)	-4026	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
49976	chr12	42104101	42104680	+	0	NA	intron (NM_173601, intron 5 of 7)	intron (NM_173601, intron 5 of 7)	40484	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
138488	chr2	207123421	207123680	+	0	NA	intron (NR_073108, intron 3 of 4)	intron (NR_073108, intron 3 of 4)	10587	NM_001270944	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
38486	chr11	45852301	45853050	+	0	NA	intron (NM_021117, intron 1 of 11)	intron (NM_021117, intron 1 of 11)	5200	NM_021117	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
131685	chr2	97725651	97725950	+	0	NA	intron (NM_001079, intron 4 of 13)	L2a|LINE|L2	-7500	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
84396	chr16	30328551	30329350	+	0	NA	intron (NR_002453, intron 1 of 12)	AluSz6|SINE|Alu	6424	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
13872	chr1	117895551	117895880	+	0	NA	intron (NM_001135589, intron 8 of 12)	intron (NM_001135589, intron 8 of 12)	33906	NM_001135589	54834		NM_017686	ENSG00000196505	GDAP2	MACROD3|SCAR27	ganglioside induced differentiation associated protein 2	protein-coding
134005	chr2	130963401	130964430	+	0	NA	exon (NM_001375903, exon 1 of 10)	exon (NM_001375903, exon 1 of 10)	260	NM_001375904	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
70269	chr14	101724301	101725200	+	0	NA	Intergenic	Intergenic	-5687	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
135403	chr2	160797701	160797950	+	0	NA	Intergenic	L1PA3|LINE|L1	-304018	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
90166	chr17	288101	289150	+	0	NA	intron (NM_006987, intron 5 of 9).2	CpG	-42894	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
151072	chr21	44800101	44800480	+	0	NA	intron (NM_003343, intron 1 of 5)	intron (NM_003343, intron 1 of 5)	1530	NM_182688	7327		NM_003343	ENSG00000184787	UBE2G2	UBC7	ubiquitin conjugating enzyme E2 G2	protein-coding
229545	chr9	122902521	122902780	+	0	NA	intron (NM_018835, intron 1 of 17)	AluSz6|SINE|Alu	2709	NM_001354486	54542		NM_018835	ENSG00000056586	RC3H2	MNAB|RNF164	ring finger and CCCH-type domains 2	protein-coding
54280	chr12	89227771	89228000	+	0	NA	Intergenic	AluJb|SINE|Alu	124616	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
3416	chr1	15803321	15803680	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	4199	NM_001089591	440567		NM_001089591	ENSG00000233954	UQCRHL	hCG25371	ubiquinol-cytochrome c reductase hinge protein like	protein-coding
48890	chr12	12503151	12504480	+	0	NA	intron (NM_030640, intron 3 of 6)	MER103C|DNA|hAT-Charlie	59048	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
232163	chr9	134135351	134137430	+	0	NA	promoter-TSS (NM_001384411)	promoter-TSS (NM_001384411)	-31	NM_001384412	11091		NM_017588	ENSG00000196363	WDR5	BIG-3|BIG3|CFAP89|SWD3	WD repeat domain 5	protein-coding
29586	chr10	71729321	71729730	+	0	NA	intron (NM_001171930, intron 29 of 30)	LTR16A2|LTR|ERVL	8325	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
204286	chr7	2660521	2661000	+	0	NA	intron (NM_025250, intron 13 of 13)	intron (NM_025250, intron 13 of 13)	-18762	NM_133463	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
84851	chr16	31134471	31134830	+	0	NA	intron (NM_002773, intron 2 of 5)	AluJb|SINE|Alu	1077	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
60607	chr13	42055901	42056100	+	0	NA	intron (NM_001204504, intron 2 of 29)	AluJr|SINE|Alu	7352	NM_178009	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
136822	chr2	182650871	182651030	+	0	NA	Intergenic	Intergenic	-65307	NR_073366	54431		NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
210219	chr7	99324101	99324300	+	0	NA	Intergenic	Charlie3|DNA|hAT-Charlie	-1673	NM_001190996	10552		NM_006409	ENSG00000241685	ARPC1A	Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L	actin related protein 2/3 complex subunit 1A	protein-coding
157925	chr22	49781451	49781550	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	42831	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
162282	chr3	47380221	47382180	+	0	NA	intron (NM_001304482, intron 1 of 23)	CpG	179	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
73843	chr15	49589201	49589430	+	0	NA	intron (NM_152647, intron 4 of 15)	intron (NM_152647, intron 4 of 15)	31503	NM_001330293	196951		NM_152647	ENSG00000166262	FAM227B	C15orf33	family with sequence similarity 227 member B	protein-coding
26094	chr10	13271551	13272030	+	0	NA	Intergenic	Intergenic	27956	NM_001037537	5264		NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
41722	chr11	66657521	66658880	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluSp|SINE|Alu	19497	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
48865	chr12	12439321	12440180	+	0	NA	intron (NM_058169, intron 3 of 3)	intron (NM_058169, intron 3 of 3)	82672	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
229827	chr9	125745601	125747700	+	0	NA	promoter-TSS (NM_001330782)	promoter-TSS (NM_001330782)	-721	NR_122032	51145		NM_016158		PBX3-DT	-	PBX3 divergent transcript	ncRNA
162913	chr3	49411321	49413600	+	0	NA	promoter-TSS (NM_001664)	promoter-TSS (NM_001664)	254	NM_022171	6988		NM_022171	ENSG00000145022	TCTA	-	T cell leukemia translocation altered	protein-coding
84158	chr16	29784101	29784570	+	0	NA	Intergenic	L1MB7|LINE|L1	6079	NM_152338	653808		NM_152338	ENSG00000174992	ZG16	JCLN|JCLN1|ZG16A	zymogen granule protein 16	protein-coding
165724	chr3	104273071	104273230	+	0	NA	Intergenic	Intergenic	-749034	NR_039611	100616336		NR_039611	ENSG00000265328	MIR548AB	-	microRNA 548ab	ncRNA
184921	chr5	112924851	112924950	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-2673	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
216808	chr8	22560621	22560880	+	0	NA	intron (NM_005775, intron 5 of 20)	intron (NM_005775, intron 5 of 20)	-4979	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
21690	chr1	206725201	206725900	+	0	NA	intron (NM_032960, intron 1 of 9)	MIRc|SINE|MIR	40645	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
112385	chr19	6066801	6067600	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	43300	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
8056	chr1	38858771	38860330	+	0	NA	exon (NM_001271851, exon 1 of 7)	exon (NM_001271851, exon 1 of 7)	222	NM_001271851	64121		NM_022157	ENSG00000116954	RRAGC	GTR2|LNGODS|LNGOS|RAGC|TIB929	Ras related GTP binding C	protein-coding
76717	chr15	75929971	75930330	+	0	NA	3' UTR (NM_012170, exon 6 of 6)	3' UTR (NM_012170, exon 6 of 6)	26272	NR_037623	26263		NM_012170	ENSG00000167196	FBXO22	FBX22|FISTC1	F-box protein 22	protein-coding
114506	chr19	12786361	12787280	+	0	NA	promoter-TSS (NR_049864)	promoter-TSS (NR_049864)	-308	NR_049864	100847071		NR_049864	ENSG00000263800	MIR5684	-	microRNA 5684	ncRNA
101181	chr17	65179051	65180280	+	0	NA	intron (NM_003835, intron 9 of 18)	(TG)n|Simple_repeat|Simple_repeat	42295	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
56187	chr12	111437621	111438000	+	0	NA	intron (NM_001291424, intron 1 of 6)	intron (NM_001291424, intron 1 of 6)	2948	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
55058	chr12	96460071	96460230	+	0	NA	Intergenic	AluSx3|SINE|Alu	-29427	NM_001306084	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
161446	chr3	42090251	42090750	+	0	NA	promoter-TSS (NM_001265608)	promoter-TSS (NM_001265608)	-857	NM_001265608	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
155300	chr22	38178301	38178700	+	0	NA	intron (NM_001199562, intron 1 of 15)	AluJb|SINE|Alu	3330	NM_001199562	8398		NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
107063	chr18	32730471	32731000	+	0	NA	intron (NM_020805, intron 3 of 8)	intron (NM_020805, intron 3 of 8)	42288	NM_020805	57565		NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding
183047	chr5	73418221	73418680	+	0	NA	Intergenic	Intergenic	30327	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
110083	chr19	1513801	1514530	+	0	NA	Intergenic	Intergenic	-1146	NM_213604	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
99582	chr17	50501051	50501650	+	0	NA	Intergenic	MIRb|SINE|MIR	-7089	NR_158785	84073		NM_032133	ENSG00000136449	MYCBPAP	AMAP-1|AMAP1	MYCBP associated protein	protein-coding
153176	chr22	23833971	23834130	+	0	NA	TTS (NM_001135751)	TTS (NM_001135751)	4956	NM_001135751	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
16019	chr1	152109521	152109780	+	0	NA	exon (NM_007113, exon 3 of 3)	exon (NM_007113, exon 3 of 3)	5804	NM_007113	7062		NM_007113	ENSG00000159450	TCHH	THH|THL|TRHY|UHS3	trichohyalin	protein-coding
108111	chr18	62191371	62191730	+	0	NA	intron (NR_144408, intron 1 of 32)	L1PA10|LINE|L1	4295	NR_144403	57614		NM_020854	ENSG00000134444	RELCH	HsT3308|HsT885|KIAA1468	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	protein-coding
165623	chr3	101695571	101696100	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-9117	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
122112	chr19	48795171	48797350	+	0	NA	intron (NM_001190, intron 10 of 10)	intron (NM_001190, intron 10 of 10)	14769	NM_001284325	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
99318	chr17	49832801	49833000	+	0	NA	3' UTR (NM_007067, exon 15 of 15)	3' UTR (NM_007067, exon 15 of 15)	-12986	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
21665	chr1	206696621	206697350	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	12080	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
145301	chr20	41047601	41048500	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	19228	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
3542	chr1	16122501	16123390	+	0	NA	Intergenic	MIR3|SINE|MIR	33124	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
159815	chr3	16367601	16368000	+	0	NA	intron (NM_015150, intron 6 of 9)	intron (NM_015150, intron 6 of 9)	102588	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
119895	chr19	41551471	41551950	+	0	NA	intron (NM_001288773, intron 1 of 7)	intron (NM_001288773, intron 1 of 7)	2192	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
145034	chr20	38091471	38092100	+	0	NA	3' UTR (NM_021215, exon 7 of 7)	3' UTR (NM_021215, exon 7 of 7)	58039	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
7521	chr1	34251151	34251250	+	0	NA	Intergenic	L1PA3|LINE|L1	74293	NM_001134734	84970		NM_032884	ENSG00000142698	C1orf94	-	chromosome 1 open reading frame 94	protein-coding
227917	chr9	94179501	94179880	+	0	NA	TTS (NR_029481)	TTS (NR_029481)	856	NR_029481	406886		NR_029481	ENSG00000199133	MIRLET7D	LET7D|MIRNLET7D|hsa-let-7d|let-7d	microRNA let-7d	ncRNA
89535	chr16	89191951	89193770	+	0	NA	intron (NM_004933, intron 11 of 13)	CpG-10236	7677	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
39647	chr11	61578271	61579300	+	0	NA	intron (NM_001370211, intron 1 of 7)	intron (NM_001370211, intron 1 of 7)	2087	NM_001252065	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
30558	chr10	79711351	79711700	+	0	NA	intron (NM_001278495, intron 6 of 6)	intron (NM_001278495, intron 6 of 6)	8298	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
94354	chr17	28905121	28905580	+	0	NA	TTS (NM_001290131)	TTS (NM_001290131)	-2271	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
43590	chr11	83119971	83120880	+	0	NA	Intergenic	Intergenic	-36706	NM_001346414	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
118186	chr19	35114641	35115380	+	0	NA	promoter-TSS (NM_021910)	promoter-TSS (NM_021910)	-813	NM_001136007	5349		NM_005971	ENSG00000089356	FXYD3	MAT8|PLML	FXYD domain containing ion transport regulator 3	protein-coding
207101	chr7	40134101	40135280	+	0	NA	promoter-TSS (NM_001193313)	promoter-TSS (NM_001193313)	-68	NM_138701	136647		NM_138701	ENSG00000168303	MPLKIP	ABHS|C7orf11|ORF20|TTD4	M-phase specific PLK1 interacting protein	protein-coding
31583	chr10	97341401	97342000	+	0	NA	Intergenic	AluJb|SINE|Alu	-6971	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
15552	chr1	150543621	150543900	+	0	NA	Intergenic	L2c|LINE|L2	-5648	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
218680	chr8	58332001	58332200	+	0	NA	Intergenic	L1PA10|LINE|L1	-59999	NR_105005	101929528		NR_105005	ENSG00000253281	LOC101929528	-	uncharacterized LOC101929528	ncRNA
204663	chr7	5452271	5453050	+	0	NA	Intergenic	Intergenic	-23733	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
128907	chr2	64212201	64213000	+	0	NA	Intergenic	Intergenic	-7115	NR_033837	150992		NR_033837	ENSG00000230923	LINC00309	NCRNA00309	long intergenic non-protein coding RNA 309	ncRNA
142409	chr20	3886271	3886830	+	0	NA	Intergenic	AluY|SINE|Alu	-2231	NM_024960	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
17364	chr1	156514651	156514750	+	0	NA	Intergenic	AluY|SINE|Alu	-13925	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
38295	chr11	43547801	43548000	+	0	NA	Intergenic	CpG	-11756	NR_031577	100313777		NR_031577	ENSG00000211568	MIR670	hsa-mir-670	microRNA 670	ncRNA
132280	chr2	104862721	104862980	+	0	NA	Intergenic	Intergenic	8735	NM_006236	5455		NM_006236	ENSG00000198914	POU3F3	BRN1|OTF8|SNIBFIS|brain-1|oct-8	POU class 3 homeobox 3	protein-coding
224782	chr9	22050771	22051530	+	0	NA	intron (NR_120536, intron 3 of 3)	intron (NR_120536, intron 3 of 3)	-41837	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
64784	chr14	34831621	34831980	+	0	NA	intron (NM_013448, intron 3 of 26)	intron (NM_013448, intron 3 of 26)	-42391	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
54466	chr12	91991351	91991780	+	0	NA	intron (NR_046160, intron 2 of 5)	MIRb|SINE|MIR	150148	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
211610	chr7	105878551	105878650	+	0	NA	Intergenic	Intergenic	-2001	NM_001385596	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
97624	chr17	44176901	44177200	+	0	NA	exon (NM_080863, exon 3 of 5)	exon (NM_080863, exon 3 of 5)	6346	NM_080863	92591		NM_080863	ENSG00000161664	ASB16	-	ankyrin repeat and SOCS box containing 16	protein-coding
166820	chr3	122754821	122755100	+	0	NA	intron (NM_024610, intron 5 of 7)	intron (NM_024610, intron 5 of 7)	38871	NM_024610	79663		NM_024610	ENSG00000169087	HSPBAP1	PASS1	HSPB1 associated protein 1	protein-coding
84026	chr16	29494271	29494700	+	0	NA	intron (NM_001355401, intron 3 of 7)	intron (NM_001355401, intron 3 of 7)	11389	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
43565	chr11	83024421	83024680	+	0	NA	intron (NM_001286060, intron 1 of 4)	intron (NM_001286060, intron 1 of 4)	9724	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
15044	chr1	148386551	148387380	+	0	NA	Intergenic	Intergenic	-1317	NR_106967	102466225		NR_106967	ENSG00000278596	MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
27931	chr10	41915971	41916130	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	451995	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
151196	chr21	45102421	45102850	+	0	NA	intron (NM_001346688, intron 1 of 11)	L1MC3|LINE|L1	27584	NM_001346688	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
111116	chr19	3219451	3219750	+	0	NA	Intergenic	Intergenic	-5061	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
78543	chr15	92968071	92968430	+	0	NA	intron (NM_001271, intron 17 of 38)	FLAM_C|SINE|Alu	63851	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
179045	chr4	165258401	165258600	+	0	NA	intron (NM_001161522, intron 3 of 13)	intron (NM_001161522, intron 3 of 13)	21523	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
218569	chr8	54874021	54874100	+	0	NA	Intergenic	L2c|LINE|L2	-227968	NM_052898	114786		NM_052898	ENSG00000206579	XKR4	XRG4|hXKR4	XK related 4	protein-coding
128657	chr2	61446621	61447080	+	0	NA	intron (NM_014709, intron 1 of 79)	Charlie1a|DNA|hAT-Charlie	24237	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
40152	chr11	62860101	62860300	+	0	NA	intron (NM_001012664, intron 1 of 9)	LTR5B|LTR|ERVK	4091	NM_001012664	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
68437	chr14	81464501	81465430	+	0	NA	Intergenic	Intergenic	-14808	NR_109999	100506700		NR_109999		LINC02308	-	long intergenic non-protein coding RNA 2308	ncRNA
212493	chr7	128564071	128564600	+	0	NA	Intergenic	MIR|SINE|MIR	-76906	NR_024368	402483		NM_001039682		LINC01000	-	long intergenic non-protein coding RNA 1000	ncRNA
38260	chr11	36594401	36594800	+	0	NA	promoter-TSS (NM_001276724)	promoter-TSS (NM_001276724)	107	NM_001276723	119710		NM_138787	ENSG00000166352	IFTAP	C11orf74|HEPIS|NWC	intraflagellar transport associated protein	protein-coding
34431	chr10	132414501	132414700	+	0	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	17400	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
145807	chr20	45425551	45425850	+	0	NA	TTS (NR_106870)	TTS (NR_106870)	190	NR_106870	102465487		NR_106870	ENSG00000273555	MIR6812	hsa-mir-6812	microRNA 6812	ncRNA
56389	chr12	113187051	113187150	+	0	NA	intron (NM_001286215, intron 2 of 2)	MIRb|SINE|MIR	1379	NM_032848	84934		NM_032848	ENSG00000139405	RITA1	C12orf52|RITA	RBPJ interacting and tubulin associated 1	protein-coding
58103	chr12	124755051	124756030	+	0	NA	Intergenic	Intergenic	84131	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
176432	chr4	89271851	89272350	+	0	NA	intron (NM_198281, intron 1 of 1)	MLT1A0|LTR|ERVL-MaLR	35700	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
132001	chr2	100586971	100587130	+	0	NA	Intergenic	L1MC3|LINE|L1	-16689	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
68955	chr14	91408201	91408900	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	9270	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
42304	chr11	68458171	68458880	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-2227	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
25875	chr10	11255351	11255650	+	0	NA	intron (NM_001326330, intron 4 of 12)	intron (NM_001326330, intron 4 of 12)	89174	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
26968	chr10	26689401	26689830	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-7809	NM_001321979	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
204764	chr7	5601451	5602300	+	0	NA	intron (NM_003088, intron 1 of 4)	intron (NM_003088, intron 1 of 4)	9059	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
55126	chr12	98599471	98599650	+	0	NA	promoter-TSS (NR_003015)	promoter-TSS (NR_003015)	-75	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
180929	chr5	34656251	34657300	+	0	NA	intron (NM_001145520, intron 1 of 17)	CpG	284	NM_001145520	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
195179	chr6	36028621	36029580	+	0	NA	intron (NM_139014, intron 1 of 10)	intron (NM_139014, intron 1 of 10)	1292	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
89114	chr16	88496951	88497050	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	28082	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
132334	chr2	105521251	105521580	+	0	NA	Intergenic	Intergenic	-82886	NM_001374399	2274		NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
200152	chr6	130368671	130368830	+	0	NA	intron (NM_001258276, intron 1 of 1)	intron (NM_001258276, intron 1 of 1)	2469	NM_001258276	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
121759	chr19	47756451	47757550	+	0	NA	TTS (NM_015710)	TTS (NM_015710)	1147	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
197262	chr6	70547451	70547630	+	0	NA	intron (NM_001162529, intron 20 of 21)	MER20|DNA|hAT-Charlie	-19390	NM_145267	135154		NM_145267	ENSG00000154079	SDHAF4	C6orf57|Sdh8	succinate dehydrogenase complex assembly factor 4	protein-coding
80926	chr16	3803051	3803350	+	0	NA	intron (NM_004380, intron 3 of 30)	intron (NM_004380, intron 3 of 30)	76920	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
229321	chr9	120892201	120892430	+	0	NA	intron (NM_001286840, intron 1 of 14)	intron (NM_001286840, intron 1 of 14)	2581	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
116238	chr19	17543551	17543650	+	0	NA	exon (NM_001321828, exon 11 of 14)	exon (NM_001321828, exon 11 of 14)	-12049	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
214211	chr7	148707921	148708530	+	0	NA	intron (NM_001370664, intron 1 of 21)	intron (NM_001370664, intron 1 of 21)	8515	NM_001370664	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
83608	chr16	28194771	28195550	+	0	NA	intron (NM_015171, intron 1 of 23)	L1ME4b|LINE|L1	16805	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
77882	chr15	89049221	89049900	+	0	NA	Intergenic	L1PA3|LINE|L1	-38896	NM_007011	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
206466	chr7	32957121	32957850	+	0	NA	promoter-TSS (NM_007270)	promoter-TSS (NM_007270)	45	NM_007270	11328		NM_007270	ENSG00000122642	FKBP9	FKBP60|FKBP63|PPIase	FKBP prolyl isomerase 9	protein-coding
222960	chr8	143182251	143182550	+	0	NA	Intergenic	Intergenic	-21746	NM_001130478	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
237955	chrX	132858151	132858250	+	0	NA	intron (NM_001077188, intron 3 of 5)	intron (NM_001077188, intron 3 of 5)	103170	NM_147175	90161		NM_147174	ENSG00000171004	HS6ST2	MRXSPM	heparan sulfate 6-O-sulfotransferase 2	protein-coding
232310	chr9	134654401	134654600	+	0	NA	intron (NM_001278074, intron 1 of 65)	intron (NM_001278074, intron 1 of 65)	-1657	NR_138049	414316		NR_138049		COL5A1-AS1	C9orf104|bA54A22.4	COL5A1 antisense RNA 1	ncRNA
180194	chr5	1492551	1493450	+	0	NA	intron (NM_024830, intron 3 of 13)	intron (NM_024830, intron 3 of 13)	17856	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
153092	chr22	23451501	23451700	+	0	NA	Intergenic	Intergenic	18036	NR_110538	101929374		NR_110538	ENSG00000234928	LINC01659	-	long intergenic non-protein coding RNA 1659	ncRNA
113012	chr19	7915971	7917200	+	0	NA	intron (NM_001195259, intron 1 of 5)	CpG	1755	NM_001195259	100507588		NM_001195259	ENSG00000260001	TGFBR3L	GEMP|TGFR-3L	transforming growth factor beta receptor 3 like	protein-coding
66161	chr14	60508471	60509430	+	0	NA	promoter-TSS (NM_007374)	promoter-TSS (NM_007374)	-196	NM_007374	4990		NM_007374	ENSG00000184302	SIX6	MCOPCT2|ODRMD|OPTX2|Six9	SIX homeobox 6	protein-coding
3150	chr1	12566771	12566930	+	0	NA	Intergenic	AluJo|SINE|Alu	12173	NR_106788	102466722		NR_106788	ENSG00000276830	MIR6730	hsa-mir-6730	microRNA 6730	ncRNA
191356	chr6	7154771	7155330	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	47089	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
86052	chr16	57577631	57579130	+	0	NA	Intergenic	MER53|DNA|hAT	35737	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
182925	chr5	70723371	70723530	+	0	NA	intron (NR_146391, intron 1 of 10).3	L1P4a|LINE|L1	3661	NR_146391	653080		NR_146391		GUSBP16	-	GUSB pseudogene 16	pseudo
119722	chr19	41218601	41219200	+	0	NA	promoter-TSS (NM_001699)	promoter-TSS (NM_001699)	-323	NM_001699	558		NM_001699	ENSG00000167601	AXL	ARK|AXL3|JTK11|Tyro7|UFO	AXL receptor tyrosine kinase	protein-coding
109405	chr19	676301	676880	+	0	NA	intron (NM_005860, intron 1 of 4)	(GCG)n|Simple_repeat|Simple_repeat	198	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
237605	chrX	123969601	123970000	+	0	NA	intron (NM_001282418, intron 2 of 33)	AluSq|SINE|Alu	8094	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
111733	chr19	4354821	4356030	+	0	NA	intron (NM_032868, intron 8 of 11)	AluY|SINE|Alu	11863	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
86544	chr16	67182471	67182630	+	0	NA	intron (NM_001369685, intron 2 of 8)	FLAM_A|SINE|Alu	1413	NM_001369680	653319		NM_001040715	ENSG00000196123	MATCAP1	KIAA0895L|TMCP1	microtubule associated tyrosine carboxypeptidase 1	protein-coding
153149	chr22	23772451	23773780	+	0	NA	intron (NR_133013, intron 1 of 7).2	CpG	266	NR_133013	4320		NM_005940	ENSG00000099953	MMP11	SL-3|ST3|STMY3	matrix metallopeptidase 11	protein-coding
28855	chr10	62632071	62633100	+	0	NA	Intergenic	Intergenic	-172135	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
66868	chr14	65075651	65075950	+	0	NA	non-coding (NR_073137, exon 4 of 4)	non-coding (NR_073137, exon 4 of 4)	-14118	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
65975	chr14	56556051	56556150	+	0	NA	Intergenic	Intergenic	-23698	NM_017799	54916		NM_017799	ENSG00000070269	TMEM260	C14orf101|SHDRA	transmembrane protein 260	protein-coding
186016	chr5	133970971	133971330	+	0	NA	TTS (NR_036624)	TTS (NR_036624)	2461	NR_134247	105379183		NR_134247		LOC105379183	-	uncharacterized LOC105379183	ncRNA
225456	chr9	35161471	35162600	+	0	NA	promoter-TSS (NM_001330653)	promoter-TSS (NM_001330653)	26	NM_006377	10497		NM_006377	ENSG00000198722	UNC13B	MUNC13|UNC13|Unc13h2|munc13-2	unc-13 homolog B	protein-coding
173860	chr4	23291851	23292380	+	0	NA	Intergenic	Intergenic	578023	NR_102357	57733		NM_020973	ENSG00000249948	GBA3	CBG|CBGL1|GLUC|KLRP	glucosylceramidase beta 3 (gene/pseudogene)	protein-coding
161479	chr3	42388221	42389080	+	0	NA	Intergenic	Intergenic	21960	NM_144634	131375		NM_144634	ENSG00000157093	LYZL4	LYC4|LYZA	lysozyme like 4	protein-coding
71628	chr14	106720721	106721330	+	0	NA	Intergenic	L1M4b|LINE|L1	129974	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
123700	chr19	55023471	55023630	+	0	NA	intron (NM_001256017, intron 4 of 6).2	MSTA|LTR|ERVL-MaLR	14714	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
94633	chr17	30031571	30031730	+	0	NA	intron (NR_026738, intron 7 of 15)	MIR|SINE|MIR	-85157	NM_001261467	84081		NM_032141	ENSG00000126653	NSRP1	CCDC55|HSPC095|NEDSSBA|NSrp70	nuclear speckle splicing regulatory protein 1	protein-coding
17928	chr1	160289721	160290180	+	0	NA	3' UTR (NM_004371, exon 33 of 33)	3' UTR (NM_004371, exon 33 of 33)	-4799	NR_036492	5824		NM_002857	ENSG00000162735	PEX19	D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1	peroxisomal biogenesis factor 19	protein-coding
206498	chr7	33131201	33131400	+	0	NA	intron (NM_001348046, intron 1 of 19)	intron (NM_001348046, intron 1 of 19)	1736	NM_198428	27241		NM_014451	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
169121	chr3	155851251	155851930	+	0	NA	intron (NM_001190992, intron 1 of 6)	intron (NM_001190992, intron 1 of 6)	2816	NM_001363883	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
7871	chr1	36389551	36389880	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	-3791	NM_001282546	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
51613	chr12	52878751	52878850	+	0	NA	Intergenic	Intergenic	20184	NR_162090	113218482		NR_162090		MIR9898	-	microRNA 9898	ncRNA
185615	chr5	131461871	131462030	+	0	NA	exon (NM_001164386, exon 19 of 29)	exon (NM_001164386, exon 19 of 29)	173279	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
5818	chr1	26623201	26624250	+	0	NA	Intergenic	Intergenic	69183	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
67831	chr14	73885151	73885400	+	0	NA	non-coding (NR_163921, exon 10 of 10)	non-coding (NR_163921, exon 10 of 10)	-1584	NM_001242926	57862		NM_021188	ENSG00000119725	ZNF410	APA-1|APA1	zinc finger protein 410	protein-coding
222648	chr8	141156751	141157800	+	0	NA	intron (NM_014957, intron 8 of 22)	intron (NM_014957, intron 8 of 22)	28686	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
145586	chr20	44520721	44521090	+	0	NA	intron (NM_006811, intron 1 of 9)	MER21B|LTR|ERVL	1165	NM_006811	10955		NM_006811	ENSG00000132824	SERINC3	AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1	serine incorporator 3	protein-coding
234539	chrX	19681621	19681880	+	0	NA	intron (NM_001353892, intron 7 of 17)	L2a|LINE|L2	-10751	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
104537	chr17	81272771	81272930	+	0	NA	intron (NM_001037984, intron 8 of 15)	intron (NM_001037984, intron 8 of 15)	22457	NM_001037984	124565		NM_138570	ENSG00000157637	SLC38A10	PP1744|SNAT10	solute carrier family 38 member 10	protein-coding
213919	chr7	142558051	142558530	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	83763	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
237861	chrX	130174301	130174730	+	0	NA	intron (NM_004794, intron 1 of 1)	intron (NM_004794, intron 1 of 1)	2553	NM_004794	9363		NM_004794	ENSG00000134594	RAB33A	RabS10	RAB33A, member RAS oncogene family	protein-coding
216977	chr8	23067271	23068090	+	0	NA	promoter-TSS (NR_038873)	promoter-TSS (NR_038873)	-549	NR_038873	286059		NR_038873	ENSG00000246130	TNFRSF10B-AS1	DR5-AS	TNFRSF10B antisense RNA 1	pseudo
46241	chr11	124717851	124718830	+	0	NA	Intergenic	CpG	-21602	NM_006176	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
140405	chr2	233092571	233093180	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	32533	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
121931	chr19	48452451	48453050	+	0	NA	exon (NM_031485, exon 7 of 7)	exon (NM_031485, exon 7 of 7)	-2824	NM_013348	3770		NM_013348	ENSG00000182324	KCNJ14	IRK4|KIR2.4	potassium inwardly rectifying channel subfamily J member 14	protein-coding
102233	chr17	75242191	75244250	+	0	NA	intron (NM_001172703, intron 5 of 16)	intron (NM_001172703, intron 5 of 16)	18386	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
151168	chr21	44949321	44950280	+	0	NA	intron (NM_001316983, intron 2 of 5)	intron (NM_001316983, intron 2 of 5)	9771	NM_058190	85395		NM_058190	ENSG00000160256	SLX9	C21orf70|FAM207A|PRED56	SLX9 ribosome biogenesis factor	protein-coding
18572	chr1	163315801	163316080	+	0	NA	intron (NM_001254748, intron 1 of 5)	intron (NM_001254748, intron 1 of 5)	5851	NR_045630	127814295		NR_045630	ENSG00000232995	LOC127814295	-	uncharacterized LOC127814295	ncRNA
37207	chr11	14336921	14337500	+	0	NA	intron (NM_001177314, intron 1 of 5)	MER44D|DNA|TcMar-Tigger	21275	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
67138	chr14	68684251	68684550	+	0	NA	Intergenic	Intergenic	-55613	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
136795	chr2	181526601	181527030	+	0	NA	intron (NM_000885, intron 21 of 27)	intron (NM_000885, intron 21 of 27)	69429	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
26324	chr10	15123851	15124350	+	0	NA	intron (NM_004808, intron 8 of 11)	intron (NM_004808, intron 8 of 11)	26745	NM_001097590	10557		NM_006414	ENSG00000152464	RPP38	-	ribonuclease P/MRP subunit p38	protein-coding
188403	chr5	154038051	154039230	+	0	NA	promoter-TSS (NM_005927)	promoter-TSS (NM_005927)	270	NM_001317993	10827		NM_018691	ENSG00000055147	FAM114A2	133K02|C5orf3	family with sequence similarity 114 member A2	protein-coding
185488	chr5	131300621	131301180	+	0	NA	intron (NM_001038702, intron 1 of 4)	MIRb|SINE|MIR	36847	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
73419	chr15	43099871	43100230	+	0	NA	intron (NM_174916, intron 1 of 46)	AluY|SINE|Alu	5988	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
114381	chr19	12545151	12545250	+	0	NA	intron (NM_144976, intron 1 of 3)	AluSp|SINE|Alu	6282	NM_144976	163050		NM_144976	ENSG00000249709	ZNF564	-	zinc finger protein 564	protein-coding
41655	chr11	66548771	66549150	+	0	NA	intron (NR_047663, intron 1 of 20)	intron (NR_047663, intron 1 of 20)	2057	NM_001104	89		NM_001104	ENSG00000248746	ACTN3	ACTN3D	actinin alpha 3	protein-coding
33229	chr10	114100971	114101950	+	0	NA	Intergenic	Intergenic	57594	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
97977	chr17	45257801	45258200	+	0	NA	intron (NM_152343, intron 1 of 4)	intron (NM_152343, intron 1 of 4)	-4080	NR_024435	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
111634	chr19	4160771	4160950	+	0	NA	intron (NM_001271996, intron 4 of 9)	AluYc3|SINE|Alu	7229	NM_032607	84699		NM_032607	ENSG00000060566	CREB3L3	CREB-H|CREBH|HYST1481|HYTG2	cAMP responsive element binding protein 3 like 3	protein-coding
197036	chr6	53343001	53343780	+	0	NA	intron (NM_001242830, intron 1 of 6)	AluJb|SINE|Alu	5560	NM_001301856	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
92994	chr17	17175751	17176550	+	0	NA	intron (NM_015134, intron 19 of 22)	intron (NM_015134, intron 19 of 22)	30183	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
60808	chr13	45336951	45337050	+	0	NA	promoter-TSS (NR_145985)	promoter-TSS (NR_145985)	-553	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
177180	chr4	108159671	108160300	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	6812	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
40911	chr11	65186051	65186400	+	0	NA	exon (NM_005186, exon 6 of 22)	exon (NM_005186, exon 6 of 22)	4297	NM_005186	823		NM_005186	ENSG00000014216	CAPN1	CANP|CANP1|CANPL1|SPG76|muCANP|muCL	calpain 1	protein-coding
16340	chr1	154270271	154270580	+	0	NA	3' UTR (NM_001375621, exon 27 of 27)	3' UTR (NM_001375621, exon 27 of 27)	-2204	NM_001018837	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
119526	chr19	40567571	40568430	+	0	NA	exon (NM_020971, exon 31 of 36)	exon (NM_020971, exon 31 of 36)	-8873	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
195197	chr6	36100001	36100800	+	0	NA	intron (NM_001315, intron 9 of 11)	intron (NM_001315, intron 9 of 11)	-30113	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
125290	chr2	10518421	10518680	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	68822	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
183068	chr5	73560901	73561580	+	0	NA	exon (NM_023039, exon 3 of 9)	exon (NM_023039, exon 3 of 9)	4399	NM_023039	57763		NM_023039	ENSG00000164331	ANKRA2	ANKRA	ankyrin repeat family A member 2	protein-coding
60101	chr13	36821271	36821650	+	0	NA	intron (NM_000538, intron 1 of 2)	AluJr|SINE|Alu	2238	NM_000538	5994		NM_000538	ENSG00000133111	RFXAP	-	regulatory factor X associated protein	protein-coding
93275	chr17	18091301	18091500	+	0	NA	intron (NM_001330144, intron 1 of 12)	AluSz|SINE|Alu	3452	NM_001388	1819		NM_001388	ENSG00000108591	DRG2	-	developmentally regulated GTP binding protein 2	protein-coding
153238	chr22	23978751	23978850	+	0	NA	intron (NM_001355, intron 1 of 3).2	AluSz|SINE|Alu	1028	NM_001355	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
127733	chr2	43560801	43561000	+	0	NA	intron (NR_144316, intron 15 of 36)	AluSx|SINE|Alu	35074	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
154758	chr22	36510221	36510500	+	0	NA	TTS (NM_003753)	TTS (NM_003753)	-3320	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
110632	chr19	2225251	2225550	+	0	NA	exon (NM_032482, exon 26 of 28)	exon (NM_032482, exon 26 of 28)	8749	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
33905	chr10	124545401	124546130	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	83942	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
6866	chr1	31154721	31155630	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	84712	NM_024522	79570		NM_024522	ENSG00000084628	NKAIN1	FAM77C	sodium/potassium transporting ATPase interacting 1	protein-coding
189651	chr5	176216521	176216780	+	0	NA	Intergenic	MER83A-int|LTR|ERV1	-17355	NR_036494	643201		NR_036494	ENSG00000248596	CEP192P1	-	CEP192 pseudogene 1	pseudo
75964	chr15	70487951	70488830	+	0	NA	Intergenic	Intergenic	17538	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
68089	chr14	75287771	75288830	+	0	NA	Intergenic	Intergenic	-6104	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
48375	chr12	9447301	9448580	+	0	NA	promoter-TSS (NR_153413)	promoter-TSS (NR_153413)	232	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
216124	chr8	11411321	11412150	+	0	NA	intron (NR_026814, intron 3 of 6)	intron (NR_026814, intron 3 of 6)	43333	NR_026814	83656		NM_054017	ENSG00000184608	FAM167A-AS1	C8orf12	FAM167A antisense RNA 1	ncRNA
181192	chr5	39145751	39146050	+	0	NA	intron (NM_199335, intron 3 of 17)	L2c|LINE|L2	-71501	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
162105	chr3	46908471	46908630	+	0	NA	Intergenic	Intergenic	26301	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
44011	chr11	94876671	94876950	+	0	NA	TTS (NM_001301007)	TTS (NM_001301007)	96746	NM_016403	51503		NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
235821	chrX	49271501	49271780	+	0	NA	intron (NM_033215, intron 1 of 3)	MIRb|SINE|MIR	1847	NM_033215	89801		NM_033215	ENSG00000049769	PPP1R3F	HB2E|LL0XNC01-7P3.1|R3F	protein phosphatase 1 regulatory subunit 3F	protein-coding
39141	chr11	50178651	50178950	+	0	NA	Intergenic	L2|LINE|L2	119662	NR_003034	441601		NR_003034	ENSG00000291108	SEPTIN7P11	-	septin 7 pseudogene 11	pseudo
117931	chr19	33125701	33126250	+	0	NA	intron (NR_135270, intron 19 of 20)	intron (NR_135270, intron 19 of 20)	-6139	NR_135565	126248		NM_173479	ENSG00000166359	WDR88	PQWD	WD repeat domain 88	protein-coding
145782	chr20	45371301	45371530	+	0	NA	intron (NR_003189, intron 3 of 5)	intron (NR_003189, intron 3 of 5)	6910	NM_014477	27296		NM_014477	ENSG00000124251	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
215873	chr8	7616151	7616530	+	0	NA	Intergenic	Intergenic	-41942	NR_046343								
220309	chr8	98426801	98427150	+	0	NA	promoter-TSS (NM_020697)	promoter-TSS (NM_020697)	17	NM_020697	3788		NM_020697	ENSG00000156486	KCNS2	KV9.2	potassium voltage-gated channel modifier subfamily S member 2	protein-coding
45406	chr11	118347721	118348380	+	0	NA	intron (NM_000073, intron 1 of 6)	intron (NM_000073, intron 1 of 6)	3706	NM_000073	917		NM_000073	ENSG00000160654	CD3G	CD3-GAMMA|CD3GAMMA|IMD17|T3G	CD3 gamma subunit of T-cell receptor complex	protein-coding
142224	chr20	3084451	3084850	+	0	NA	promoter-TSS (NM_000490)	promoter-TSS (NM_000490)	74	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
72683	chr15	38551921	38553580	+	0	NA	intron (NM_001128602, intron 2 of 15)	MER63B|DNA|hAT-Blackjack	12064	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
48423	chr12	9679401	9679600	+	0	NA	intron (NM_001197317, intron 1 of 3)	L1MC1|LINE|L1	9787	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
39848	chr11	62372621	62373230	+	0	NA	intron (NM_001083926, intron 4 of 6)	intron (NM_001083926, intron 4 of 6)	35477	NM_001083926	80150		NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase and isoaspartyl peptidase 1	protein-coding
189901	chr5	177350821	177352580	+	0	NA	promoter-TSS (NM_006816)	promoter-TSS (NM_006816)	-32	NM_006816	10960		NM_006816	ENSG00000169223	LMAN2	C5orf8|GP36B|VIP36	lectin, mannose binding 2	protein-coding
181049	chr5	36145471	36145830	+	0	NA	intron (NM_001007527, intron 1 of 17)	intron (NM_001007527, intron 1 of 17)	2338	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	ncRNA
224807	chr9	23590551	23590850	+	0	NA	intron (NR_121602, intron 11 of 27)	intron (NR_121602, intron 11 of 27)	81699	NR_121602	101929563		NR_121602	ENSG00000283982	LOC101929563	-	uncharacterized LOC101929563	ncRNA
88507	chr16	85306121	85306780	+	0	NA	promoter-TSS (NR_049816)	promoter-TSS (NR_049816)	-125	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
102421	chr17	75633971	75634750	+	0	NA	intron (NM_001162995, intron 1 of 2)	intron (NM_001162995, intron 1 of 2)	926	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
128422	chr2	55291501	55291700	+	0	NA	intron (NM_018084, intron 31 of 31)	intron (NM_018084, intron 31 of 31)	9281	NR_027258	344405		NM_001080459	ENSG00000293422	PRORSD1P	NCRNA00117|PRDXDD1P|Prdxdd1|ProX|ProXp-ala|Ybakd1	prolyl-tRNA synthetase associated domain containing 1, pseudogene	pseudo
127634	chr2	43133501	43134930	+	0	NA	Intergenic	Intergenic	-31770	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
209245	chr7	75876871	75877500	+	0	NA	Intergenic	Intergenic	-1807	NM_001346189	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
233181	chr9	137194421	137194980	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	6024	NM_003731	8636		NM_003731	ENSG00000176101	SSNA1	N14|NA-14|NA14	SS nuclear autoantigen 1	protein-coding
18776	chr1	167515051	167515380	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	3314	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
56681	chr12	120009671	120010100	+	0	NA	intron (NR_147894, intron 3 of 8)	intron (NR_147894, intron 3 of 8)	20041	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
13362	chr1	113874171	113874900	+	0	NA	intron (NR_037864, intron 3 of 4)	intron (NR_037864, intron 3 of 4)	-2776	NM_001193431	26191		NM_012411	ENSG00000134242	PTPN22	LYP|LYP1|LYP2|PEP|PTPN22.5|PTPN22.6|PTPN8	protein tyrosine phosphatase non-receptor type 22	protein-coding
96288	chr17	39929301	39929650	+	0	NA	Intergenic	Intergenic	-1874	NM_001320802	94103		NM_016471	ENSG00000172057	ORMDL3	-	ORMDL sphingolipid biosynthesis regulator 3	protein-coding
161511	chr3	42579321	42579980	+	0	NA	intron (NM_001201572, intron 1 of 6)	intron (NM_001201572, intron 1 of 6)	-2190	NM_016305	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
55313	chr12	103901551	103902450	+	0	NA	intron (NR_027249, intron 4 of 15)	intron (NR_027249, intron 4 of 15)	28211	NR_027249	253724		NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
198490	chr6	106327101	106327300	+	0	NA	Intergenic	L1ME2z|LINE|L1	-1380	NM_001286107	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
74300	chr15	58070971	58071130	+	0	NA	non-coding (NR_147215, exon 3 of 3)	non-coding (NR_147215, exon 3 of 3)	-5127	NM_001206897	8854		NM_003888	ENSG00000128918	ALDH1A2	DIH4|RALDH(II)|RALDH2|RALDH2-T	aldehyde dehydrogenase 1 family member A2	protein-coding
220003	chr8	90004471	90004950	+	0	NA	intron (NM_001359, intron 1 of 9)	L2a|LINE|L2	3233	NM_001359	1666		NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	2,4-dienoyl-CoA reductase 1	protein-coding
160109	chr3	19866771	19867100	+	0	NA	Intergenic	Intergenic	67282	NM_144715	151651		NM_144715	ENSG00000163576	EFHB	CFAP21	EF-hand domain family member B	protein-coding
222305	chr8	133485851	133486830	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	85547	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
12698	chr1	109487851	109488280	+	0	NA	intron (NM_001350177, intron 6 of 11)	intron (NM_001350177, intron 6 of 11)	4106	NM_001350177	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
87595	chr16	73196951	73197050	+	0	NA	Intergenic	Intergenic	-52553	NR_163978	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
126888	chr2	32279251	32279800	+	0	NA	intron (NM_032312, intron 1 of 5)	AluY|SINE|Alu	1621	NM_032312	84272		NM_032312	ENSG00000119820	YIPF4	FinGER4|Nbla11189|YIPFalpha2	Yip1 domain family member 4	protein-coding
216999	chr8	23145551	23146250	+	0	NA	exon (NM_003840, exon 5 of 9)	exon (NM_003840, exon 5 of 9)	18127	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
161836	chr3	45686551	45686930	+	0	NA	TTS (NM_014240)	TTS (NM_014240)	2142	NR_033947	644714		NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
146653	chr20	50387651	50388250	+	0	NA	Intergenic	AluJb|SINE|Alu	-66608	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
138153	chr2	202375321	202378480	+	0	NA	5' UTR (NM_001204, exon 1 of 13)	5' UTR (NM_001204, exon 1 of 13)	573	NM_001204	659		NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding
4196	chr1	19442121	19442380	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	42045	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
15756	chr1	151155921	151156900	+	0	NA	promoter-TSS (NR_144937)	promoter-TSS (NR_144937)	-239	NR_144937	100534012		NM_001204848	ENSG00000163156	TNFAIP8L2-SCNM1	SCNM1	TNFAIP8L2-SCNM1 readthrough	protein-coding
201154	chr6	142926151	142927340	+	0	NA	intron (NM_006734, intron 1 of 9)	CpG	18431	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
224586	chr9	20256371	20256680	+	0	NA	Intergenic	Intergenic	154713	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
133715	chr2	127366251	127366350	+	0	NA	intron (NM_001371911, intron 1 of 16)	FLAM_A|SINE|Alu	21675	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
181227	chr5	39184421	39184680	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	35013	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
189378	chr5	172711901	172712100	+	0	NA	Intergenic	L2c|LINE|L2	-43503	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
206775	chr7	36718421	36718880	+	0	NA	intron (NM_001177506, intron 1 of 21)	L1MB7|LINE|L1	5844	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
96939	chr17	42175771	42176330	+	0	NA	intron (NM_012285, intron 5 of 16)	intron (NM_012285, intron 5 of 16)	5092	NM_012285	23415		NM_012285	ENSG00000089558	KCNH4	BEC2|ELK1|Kv12.3	potassium voltage-gated channel subfamily H member 4	protein-coding
45355	chr11	118245751	118246550	+	0	NA	intron (NM_198275, intron 1 of 5)	intron (NM_198275, intron 1 of 5)	6215	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
24008	chr1	235254851	235255150	+	0	NA	intron (NM_016374, intron 5 of 23)	intron (NM_016374, intron 5 of 23)	-64884	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
168581	chr3	149016971	149017850	+	0	NA	intron (NM_001184721, intron 5 of 5)	intron (NM_001184721, intron 5 of 5)	25870	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
87560	chr16	72007671	72007830	+	0	NA	promoter-TSS (NM_001361)	promoter-TSS (NM_001361)	-994	NM_001361	1723		NM_001361	ENSG00000102967	DHODH	DHOdehase|POADS|URA1	dihydroorotate dehydrogenase (quinone)	protein-coding
227610	chr9	92757321	92757780	+	0	NA	intron (NM_001003800, intron 1 of 6)	AluYh3|SINE|Alu	7283	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
198761	chr6	108630221	108630630	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	69508	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
36511	chr11	6416071	6416450	+	0	NA	intron (NM_145689, intron 1 of 13)	L2b|LINE|L2	2834	NM_001164	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
99053	chr17	48911051	48911500	+	0	NA	intron (NM_023079, intron 2 of 6)	intron (NM_023079, intron 2 of 6)	-2292	NR_135674	105371814		NR_135674	ENSG00000293025	LOC105371814	-	uncharacterized LOC105371814	ncRNA
139025	chr2	218399101	218402530	+	0	NA	intron (NM_021198, intron 1 of 6)	CpG-16986	947	NM_182642	58190		NM_021198	ENSG00000144579	CTDSP1	NIF3|NLI-IF|NLIIF|SCP1	CTD small phosphatase 1	protein-coding
124169	chr19	56115351	56115450	+	0	NA	intron (NM_001351682, intron 1 of 1)	AluY|SINE|Alu	5895	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
146903	chr20	51539651	51540280	+	0	NA	intron (NM_001258292, intron 1 of 9)	L1MC3|LINE|L1	2754	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
93622	chr17	19158651	19158900	+	0	NA	3' UTR (NM_001353418, exon 4 of 4)	3' UTR (NM_001353418, exon 4 of 4)	3849	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
127116	chr2	37648351	37649530	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	22702	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
181343	chr5	40428251	40428750	+	0	NA	Intergenic	Intergenic	-251415	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
155357	chr22	38283301	38283700	+	0	NA	Intergenic	AluSx|SINE|Alu	-10490	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
192683	chr6	26252621	26252900	+	0	NA	TTS (NM_003524)	TTS (NM_003524)	1146	NM_003524	8345		NM_003524	ENSG00000275713	H2BC9	H2B/j|H2BFJ|HIST1H2BH	H2B clustered histone 9	protein-coding
116092	chr19	17266571	17268200	+	0	NA	promoter-TSS (NM_001288757)	promoter-TSS (NM_001288757)	9	NM_001033549	29086		NM_014173	ENSG00000105393	BABAM1	C19orf62|HSPC142|MERIT40|NBA1	BRISC and BRCA1 A complex member 1	protein-coding
156012	chr22	39942321	39943000	+	0	NA	intron (NM_001291828, intron 1 of 4)	AluJo|SINE|Alu	-4157	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
146754	chr20	50820321	50820880	+	0	NA	intron (NM_198799, intron 2 of 4)	intron (NM_198799, intron 2 of 4)	25539	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
25020	chr10	3622421	3622680	+	0	NA	intron (NR_131187, intron 1 of 1)	Tigger3a|DNA|TcMar-Tigger	-119712	NR_155744	101927880		NR_155743	ENSG00000233321	LINC02669	-	long intergenic non-protein coding RNA 2669	ncRNA
58735	chr12	132595721	132596780	+	0	NA	Intergenic	Intergenic	14253	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
7260	chr1	32359151	32359250	+	0	NA	Intergenic	AluY|SINE|Alu	3043	NM_001167676	100128071		NM_001167676	ENSG00000225828	FAM229A	-	family with sequence similarity 229 member A	protein-coding
184558	chr5	102764551	102764950	+	0	NA	intron (NM_001364588, intron 1 of 24)	intron (NM_001364588, intron 1 of 24)	9445	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
147144	chr20	56360921	56361180	+	0	NA	intron (NM_080821, intron 1 of 2)	intron (NM_080821, intron 1 of 2)	2076	NM_080821	116151		NM_080821	ENSG00000124098	FAM210B	5A3|C20orf108|dJ1167H4.1	family with sequence similarity 210 member B	protein-coding
203685	chr7	1023501	1023950	+	0	NA	promoter-TSS (NR_029898)	promoter-TSS (NR_029898)	-699	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
73884	chr15	50423751	50425500	+	0	NA	5' UTR (NM_001128610, exon 1 of 20)	5' UTR (NM_001128610, exon 1 of 20)	220	NM_005154	9101		NM_005154	ENSG00000138592	USP8	HumORF8|PITA4|SPG59|UBPY	ubiquitin specific peptidase 8	protein-coding
192784	chr6	26540971	26541130	+	0	NA	intron (NM_006353, intron 1 of 1)	intron (NM_006353, intron 1 of 1)	2684	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
116149	chr19	17382671	17383380	+	0	NA	Intergenic	AluY|SINE|Alu	-5683	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
37719	chr11	31107001	31107230	+	0	NA	intron (NM_001367979, intron 12 of 38)	intron (NM_001367979, intron 12 of 38)	-114429	NM_020869	341019		NM_020869	ENSG00000170959	DCDC1	DCDC5	doublecortin domain containing 1	protein-coding
47787	chr12	6566201	6566680	+	0	NA	intron (NM_001258309, intron 4 of 16)	intron (NM_001258309, intron 4 of 16)	1851	NM_001258309	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
161497	chr3	42529271	42530030	+	0	NA	intron (NM_004624, intron 6 of 12)	intron (NM_004624, intron 6 of 12)	2956	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
20908	chr1	202170521	202171030	+	0	NA	intron (NR_002930, intron 4 of 21)	MIRb|SINE|MIR	2724	NR_002930	148713		NR_002930	ENSG00000293457	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase receptor type V, pseudogene	pseudo
75328	chr15	65319771	65319930	+	0	NA	Intergenic	L1MB8|LINE|L1	15173	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
183096	chr5	74581921	74582180	+	0	NA	Intergenic	L2b|LINE|L2	-45074	NR_126354	104310351		NR_126354	ENSG00000248673	LINC01331	-	long intergenic non-protein coding RNA 1331	ncRNA
117759	chr19	29676771	29677580	+	0	NA	Intergenic	Intergenic	11714	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
203418	chr7	266151	266250	+	0	NA	Intergenic	Intergenic	-23970	NM_001374838	116033993		NM_001374838	ENSG00000248767	FOXL3	-	forkhead box L3	protein-coding
23626	chr1	230278171	230278330	+	0	NA	intron (NM_001291866, intron 15 of 15)	AluJr|SINE|Alu	148082	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
174534	chr4	40191651	40191950	+	0	NA	intron (NM_001278368, intron 1 of 2)	intron (NM_001278368, intron 1 of 2)	720	NM_001278368	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
32528	chr10	102935551	102935850	+	0	NA	intron (NM_017649, intron 1 of 7)	AluJr|SINE|Alu	-17365	NR_160733	107984265		NR_160733	ENSG00000286575	LOC107984265	-	uncharacterized LOC107984265	ncRNA
144456	chr20	35541621	35543100	+	0	NA	exon (NM_015966, exon 2 of 13)	exon (NM_015966, exon 2 of 13)	282	NM_015966	51614		NM_015966	ENSG00000125991	ERGIC3	C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2	ERGIC and golgi 3	protein-coding
136478	chr2	177217351	177218930	+	0	NA	intron (NR_138470, intron 8 of 11)	AluSc8|SINE|Alu	5346	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
237348	chrX	118538801	118539280	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	43131	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
141175	chr2	239280471	239280900	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-24777	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
213852	chr7	142133701	142134100	+	0	NA	intron (NM_001293626, intron 6 of 47)	intron (NM_001293626, intron 6 of 47)	22182	NM_001293626	93432		NM_001008748	ENSG00000257743	MGAM2	-	maltase-glucoamylase 2 (putative)	protein-coding
9922	chr1	54468921	54469380	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	-62756	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
195222	chr6	36140221	36140480	+	0	NA	non-coding (NR_072996, exon 10 of 10)	non-coding (NR_072996, exon 10 of 10)	9837	NM_002754	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
162564	chr3	48655621	48657430	+	0	NA	intron (NM_001407, intron 2 of 34)	CpG-19824	6361	NM_001407	1951		NM_001407	ENSG00000008300	CELSR3	ADGRC3|CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1	cadherin EGF LAG seven-pass G-type receptor 3	protein-coding
52900	chr12	57216301	57218330	+	0	NA	intron (NM_007224, intron 1 of 1)	CpG	521	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
167286	chr3	128645421	128645730	+	0	NA	intron (NM_002950, intron 1 of 9)	AluSx4|SINE|Alu	5243	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
176842	chr4	102581571	102582130	+	0	NA	intron (NM_001382625, intron 10 of 24)	intron (NM_001382625, intron 10 of 24)	-79364	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
143195	chr20	24931101	24931330	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-18054	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
29782	chr10	72272721	72274300	+	0	NA	promoter-TSS (NM_019058)	promoter-TSS (NM_019058)	-414	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
163477	chr3	50638171	50638330	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	21099	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
234728	chrX	21939301	21939730	+	0	NA	Intergenic	Intergenic	-1058	NM_001258423	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
23448	chr1	228455721	228456180	+	0	NA	Intergenic	Intergenic	1923	NM_033445	92815		NM_033445	ENSG00000181218	H2AC25	H2AW|HIST3H2A	H2A clustered histone 25	protein-coding
166419	chr3	113735671	113735830	+	0	NA	intron (NM_025146, intron 1 of 4)	AluSz6|SINE|Alu	10499	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
181076	chr5	36734551	36734650	+	0	NA	Intergenic	Intergenic	127994	NM_004172	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
151147	chr21	44912971	44913400	+	0	NA	intron (NM_001127491, intron 1 of 15)	intron (NM_001127491, intron 1 of 15)	7714	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
185153	chr5	119326051	119326730	+	0	NA	intron (NM_001286815, intron 2 of 2)	L2c|LINE|L2	-6785	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
167764	chr3	132658921	132659600	+	0	NA	promoter-TSS (NM_001321239)	promoter-TSS (NM_001321239)	-237	NM_001321239	79876		NM_024818	ENSG00000081307	UBA5	DEE44|EIEE44|SCAR24|THIFP1|UBE1DC1	ubiquitin like modifier activating enzyme 5	protein-coding
112559	chr19	6586871	6587930	+	0	NA	intron (NM_001330332, intron 2 of 3)	GA-rich|Low_complexity|Low_complexity	3750	NM_001330332	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
71827	chr15	22174001	22174900	+	0	NA	Intergenic	Intergenic	4146	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
41526	chr11	66272471	66273780	+	0	NA	intron (NM_030981, intron 4 of 5)	MIRc|SINE|MIR	4486	NM_030981	81876		NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
66667	chr14	63901421	63902050	+	0	NA	intron (NM_015180, intron 1 of 114)	AluJr4|SINE|Alu	48731	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
222667	chr8	141203121	141203800	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	25114	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
42122	chr11	67615351	67616980	+	0	NA	promoter-TSS (NR_033791)	promoter-TSS (NR_033791)	-501	NR_033791	390213		NR_033791		DOC2GP	-	double C2 domain gamma, pseudogene	pseudo
155965	chr22	39859901	39860250	+	0	NA	intron (NM_152512, intron 3 of 6)	L2a|LINE|L2	33685	NM_152512	150350		NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
192266	chr6	20369721	20370000	+	0	NA	Intergenic	Intergenic	-32019	NM_001949	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
205344	chr7	12686251	12688500	+	0	NA	promoter-TSS (NM_005738)	promoter-TSS (NM_005738)	89	NM_001195396	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
197584	chr6	79947101	79948330	+	0	NA	promoter-TSS (NM_022726)	promoter-TSS (NM_022726)	-162	NM_022726	6785		NM_022726	ENSG00000118402	ELOVL4	ADMD|CT118|ISQMR|SCA34|STGD2|STGD3	ELOVL fatty acid elongase 4	protein-coding
66378	chr14	61485401	61485600	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	84694	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
105023	chr17	82048251	82048350	+	0	NA	3' UTR (NM_002917, exon 8 of 8)	3' UTR (NM_002917, exon 8 of 8)	3511	NM_002917	5986		NM_002917	ENSG00000169733	RFNG	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
29991	chr10	73748821	73749480	+	0	NA	intron (NM_198597, intron 2 of 22)	intron (NM_198597, intron 2 of 22)	4778	NM_198597	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
218987	chr8	63007801	63008200	+	0	NA	Intergenic	MER74A|LTR|ERVL	30806	NM_003878	8836		NM_003878	ENSG00000137563	GGH	GATD10|GH	gamma-glutamyl hydrolase	protein-coding
99786	chr17	51165521	51167550	+	0	NA	promoter-TSS (NM_001018138)	promoter-TSS (NM_001018138)	34	NM_001018139	4831		NM_002512	ENSG00000243678	NME2	NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF	NME/NM23 nucleoside diphosphate kinase 2	protein-coding
104425	chr17	81070801	81071200	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	-11989	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
114702	chr19	13140551	13141200	+	0	NA	3' UTR (NM_052876, exon 6 of 6)	3' UTR (NM_052876, exon 6 of 6)	9500	NM_003765	8677		NM_003765	ENSG00000104915	STX10	SYN10|hsyn10	syntaxin 10	protein-coding
14249	chr1	143246971	143247700	+	0	NA	Intergenic	Intergenic	175257	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
31544	chr10	96984721	96984980	+	0	NA	exon (NM_001346516, exon 8 of 8)	exon (NM_001346516, exon 8 of 8)	-117906	NR_038330	100505540		NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
130056	chr2	74454421	74455730	+	0	NA	promoter-TSS (NM_031288)	promoter-TSS (NM_031288)	-12	NM_031288	83444		NM_031288	ENSG00000115274	INO80B	HMGA1L4|HMGIYL4|IES2|PAP-1BP|PAPA-1|PAPA1|ZNHIT4|hIes2	INO80 complex subunit B	protein-coding
15276	chr1	149712421	149712780	+	0	NA	Intergenic	tRNA-Val-GTG|tRNA|tRNA	10391	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
183404	chr5	77867371	77867530	+	0	NA	Intergenic	Intergenic	-17206	NR_105012	101929154		NR_105012	ENSG00000287162	LOC101929154	-	uncharacterized LOC101929154	ncRNA
46812	chr11	130340551	130341250	+	0	NA	intron (NR_148980, intron 1 of 6)	LTR06|LTR|ERV1	25907	NR_148980	646383		NM_001039787	ENSG00000175773	ZBTB44-DT	-	ZBTB44 divergent transcript	ncRNA
145850	chr20	45888901	45889480	+	0	NA	promoter-TSS (NM_001127695)	promoter-TSS (NM_001127695)	-954	NR_133656	5476		NM_000308	ENSG00000064601	CTSA	GLB2|GSL|NGBE|PPCA|PPGB	cathepsin A	protein-coding
228106	chr9	96553351	96553450	+	0	NA	intron (NR_147239, intron 4 of 14)	AluSq2|SINE|Alu	13431	NM_001351569	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
64743	chr14	34548301	34549350	+	0	NA	Intergenic	AluJo|SINE|Alu	2111	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
235570	chrX	47384251	47384780	+	0	NA	intron (NM_003446, intron 1 of 3)	MER4B-int|LTR|ERV1	-4135	NR_003710	100124540		NR_003710	ENSG00000221459	SNORA11C	-	small nucleolar RNA, H/ACA box 11C	snoRNA
128600	chr2	60972271	60972580	+	0	NA	intron (NM_001322127, intron 4 of 16)	AluY|SINE|Alu	44787	NM_001322124	150962		NM_144709	ENSG00000162927	PUS10	CCDC139|DOBI|Hup10	pseudouridine synthase 10	protein-coding
120161	chr19	42240321	42240780	+	0	NA	intron (NM_019884, intron 1 of 10)	intron (NM_019884, intron 1 of 10)	2052	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
69356	chr14	93998771	93998930	+	0	NA	intron (NR_024183, intron 2 of 10).2	intron (NR_024183, intron 2 of 10).2	1549	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
59219	chr13	23379201	23379880	+	0	NA	intron (NM_014363, intron 2 of 9)	(CCTCA)n|Simple_repeat|Simple_repeat	-4032	NM_001278055	26278		NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding
15083	chr1	148513571	148513730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-30348	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
31052	chr10	88974771	88975830	+	0	NA	intron (NM_001320855, intron 1 of 8)	intron (NM_001320855, intron 1 of 8)	-15498	NR_028035	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
164101	chr3	56612971	56613400	+	0	NA	intron (NR_148366, intron 11 of 18)	L1MA4A|LINE|L1	50861	NM_015224	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
150938	chr21	44287751	44287850	+	0	NA	intron (NM_000383, intron 4 of 13)	L2b|LINE|L2	1924	NM_000383	326		NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
8650	chr1	41800351	41801030	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	118232	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
211917	chr7	112449701	112451500	+	0	NA	promoter-TSS (NR_120333)	promoter-TSS (NR_120333)	92	NR_120333	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
82956	chr16	21906771	21907130	+	0	NA	Intergenic	AluJb|SINE|Alu	-40215	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
78584	chr15	93035721	93036830	+	0	NA	3' UTR (NM_001166288, exon 4 of 4)	3' UTR (NM_001166288, exon 4 of 4)	36881	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
155851	chr22	39455351	39455450	+	0	NA	Intergenic	AluSg|SINE|Alu	-1612	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
224978	chr9	33085301	33085500	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8726	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
22487	chr1	221725921	221726700	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	10590	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
128950	chr2	64612451	64612550	+	0	NA	intron (NR_034023, intron 1 of 3)	AluSp|SINE|Alu	5188	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
124010	chr19	55465071	55466150	+	0	NA	Intergenic	Intergenic	-3968	NM_024710	79763		NM_024710	ENSG00000063241	ISOC2	-	isochorismatase domain containing 2	protein-coding
167663	chr3	129892171	129894230	+	0	NA	promoter-TSS (NR_037893)	promoter-TSS (NR_037893)	376	NM_001128224	23023		NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
6185	chr1	27442501	27442700	+	0	NA	intron (NM_006990, intron 1 of 8)	AluJb|SINE|Alu	47567	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
25390	chr10	6501371	6501730	+	0	NA	intron (NM_001282645, intron 3 of 16)	AluSp|SINE|Alu	78726	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
10613	chr1	67736121	67736580	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	51149	NM_001199741	1647		NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
235243	chrX	41457571	41458000	+	0	NA	intron (NM_001378477, intron 2 of 2)	intron (NM_001378477, intron 2 of 2)	10325	NM_022567	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
4234	chr1	19484251	19484800	+	0	NA	promoter-TSS (NM_001282162)	promoter-TSS (NM_001282162)	-230	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
168306	chr3	141552351	141553350	+	0	NA	intron (NM_006506, intron 5 of 23)	intron (NM_006506, intron 5 of 23)	65823	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
69198	chr14	92671151	92671800	+	0	NA	intron (NM_024832, intron 7 of 9)	intron (NM_024832, intron 7 of 9)	77152	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
216670	chr8	22146571	22147200	+	0	NA	TTS (NM_139278)	TTS (NM_139278)	-4978	NM_001316965	80346		NM_025232	ENSG00000168476	REEP4	C8orf20|PP432|Yip2c	receptor accessory protein 4	protein-coding
26102	chr10	13303951	13304930	+	0	NA	Intergenic	AluSx3|SINE|Alu	-4310	NM_001323083	5264		NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
116176	chr19	17422101	17422700	+	0	NA	exon (NM_001304547, exon 5 of 10)	exon (NM_001304547, exon 5 of 10)	2353	NM_138401	93343		NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
235327	chrX	43653151	43653450	+	0	NA	Intergenic	L2b|LINE|L2	-1607	NM_001270458	4128		NM_000240	ENSG00000189221	MAOA	BRNRS|MAO-A	monoamine oxidase A	protein-coding
27045	chr10	27104751	27105700	+	0	NA	Intergenic	Intergenic	-4731	NM_001256053	22852		NM_014915	ENSG00000107890	ANKRD26	THC2|bA145E8.1	ankyrin repeat domain containing 26	protein-coding
105329	chr17	82592501	82595050	+	0	NA	intron (NM_004514, intron 8 of 8)	intron (NM_004514, intron 8 of 8)	54669	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
2195	chr1	8603871	8604780	+	0	NA	intron (NM_012102, intron 5 of 23)	L1MC4a|LINE|L1	-109412	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
18256	chr1	161065001	161065650	+	0	NA	intron (NM_001025598, intron 1 of 11)	L4_A_Mam|LINE|RTE-X	4566	NM_181720	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
69891	chr14	99396201	99396480	+	0	NA	Intergenic	Intergenic	84519	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
69405	chr14	94053271	94053630	+	0	NA	intron (NM_020414, intron 7 of 8).2	AluJo|SINE|Alu	27110	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
25365	chr10	6416871	6417680	+	0	NA	intron (NM_001323267, intron 17 of 17)	intron (NM_001323267, intron 17 of 17)	66959	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
75098	chr15	64454021	64454280	+	0	NA	intron (NR_135855, intron 11 of 11)	intron (NR_135855, intron 11 of 11)	-6428	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
224034	chr9	3479551	3480250	+	0	NA	intron (NM_001282116, intron 1 of 16)	intron (NM_001282116, intron 1 of 16)	9534	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
150074	chr21	37402401	37402930	+	0	NA	intron (NM_001347723, intron 1 of 10)	L1MEf|LINE|L1	-16240	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
183172	chr5	75339001	75339300	+	0	NA	intron (NM_001130996, intron 1 of 18)	intron (NM_001130996, intron 1 of 18)	1930	NM_000859	3156		NM_000859	ENSG00000113161	HMGCR	LDLCQ3|LGMDR28|MYPLG	3-hydroxy-3-methylglutaryl-CoA reductase	protein-coding
6451	chr1	28248301	28249480	+	0	NA	Intergenic	MIRc|SINE|MIR	-10628	NM_031459	83667		NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding
214354	chr7	149580771	149581530	+	0	NA	intron (NR_027788, intron 3 of 7)	(AAAACC)n|Simple_repeat|Simple_repeat	43640	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
224301	chr9	6487421	6487680	+	0	NA	intron (NM_152896, intron 9 of 15)	AluSq2|SINE|Alu	74351	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
194130	chr6	31968271	31969500	+	0	NA	TTS (NM_005510).5	TTS (NM_005510).5	-2290	NR_026717	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
124237	chr19	57389541	57390900	+	0	NA	intron (NM_152909, intron 1 of 2)	intron (NM_152909, intron 1 of 2)	366	NM_001172773	147694		NM_152909	ENSG00000188785	ZNF548	-	zinc finger protein 548	protein-coding
171606	chr3	197302621	197303280	+	0	NA	non-coding (NR_038289, exon 3 of 3)	non-coding (NR_038289, exon 3 of 3)	-3629	NM_001366203	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
219574	chr8	79684651	79684950	+	0	NA	Intergenic	Intergenic	73683	NM_007029	11075		NM_007029	ENSG00000104435	STMN2	SCG10|SCGN10	stathmin 2	protein-coding
30445	chr10	79069901	79071500	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	1734	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
174086	chr4	27977851	27978050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	760471	NR_125921	101929199		NR_125921	ENSG00000249699	LINC02261	-	long intergenic non-protein coding RNA 2261	ncRNA
76209	chr15	73865701	73866100	+	0	NA	Intergenic	Intergenic	-7664	NM_001286434	161514		NM_153356	ENSG00000167139	TBC1D21	MgcRabGAP	TBC1 domain family member 21	protein-coding
24173	chr1	235877871	235878100	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	5723	NM_001301365	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
96106	chr17	39631471	39631650	+	0	NA	intron (NM_032192, intron 4 of 6)	intron (NM_032192, intron 4 of 6)	3057	NM_001242464	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
123757	chr19	55083421	55083930	+	0	NA	intron (NM_133180, intron 14 of 19)	CpG-15148	3283	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
44640	chr11	110208771	110209530	+	0	NA	intron (NM_001260496, intron 6 of 7)	L1PA2|LINE|L1	87464	NM_002906	5962		NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding
170503	chr3	186241901	186242130	+	0	NA	intron (NM_001346, intron 20 of 24)	intron (NM_001346, intron 20 of 24)	120219	NM_001080745	1608		NM_001346	ENSG00000058866	DGKG	DAGK3|DGK-GAMMA	diacylglycerol kinase gamma	protein-coding
86583	chr16	67239571	67240230	+	0	NA	intron (NM_001318202, intron 1 of 23)	L2a|LINE|L2	7581	NM_001318202	29109		NM_013241	ENSG00000135723	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
171956	chr4	895371	895830	+	0	NA	intron (NM_001318134, intron 4 of 24)	intron (NM_001318134, intron 4 of 24)	36716	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
213780	chr7	140714321	140714980	+	0	NA	3' UTR (NM_001378474, exon 18 of 18)	3' UTR (NM_001378474, exon 18 of 18)	-17573	NR_024454	100134713		NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
63385	chr13	114060701	114061100	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	17055	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
43079	chr11	74735371	74736080	+	0	NA	Intergenic	MER63B|DNA|hAT-Blackjack	-4299	NM_015424	25884		NM_015424	ENSG00000054938	CHRDL2	BNF1|CHL2	chordin like 2	protein-coding
83807	chr16	28828651	28829330	+	0	NA	intron (NM_148416, intron 6 of 22)	AluSx|SINE|Alu	5942	NM_007245	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
1500	chr1	2770301	2770700	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	30368	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
92068	chr17	7516021	7517350	+	0	NA	Intergenic	AluSc8|SINE|Alu	32319	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
122533	chr19	49632001	49632200	+	0	NA	Intergenic	Intergenic	8043	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
110555	chr19	2106771	2107330	+	0	NA	intron (NM_001374799, intron 31 of 31)	AluY|SINE|Alu	10135	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
192298	chr6	20810451	20810550	+	0	NA	intron (NM_017774, intron 8 of 15)	FRAM|SINE|Alu	276043	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
17874	chr1	160007521	160007950	+	0	NA	Intergenic	Intergenic	24255	NM_145167	93183		NM_145167	ENSG00000143315	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis class M	protein-coding
87829	chr16	75627721	75628580	+	0	NA	intron (NM_001378148, intron 13 of 13)	intron (NM_001378148, intron 13 of 13)	-4869	NM_001324448	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
55235	chr12	101839701	101840130	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-8956	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
93755	chr17	19974401	19975100	+	0	NA	intron (NM_007202, intron 1 of 14)	AluJr|SINE|Alu	3078	NM_007202	11216		NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A-kinase anchoring protein 10	protein-coding
41082	chr11	65514621	65515250	+	0	NA	Intergenic	Intergenic	-7503	NR_145459	109136579		NR_145459	ENSG00000289740	TALAM1	-	TALAM1 transcript, MALAT1 antisense RNA	ncRNA
10515	chr1	66924301	66925880	+	0	NA	promoter-TSS (NM_001077703)	promoter-TSS (NM_001077703)	100	NM_001146112	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
121353	chr19	46825221	46825980	+	0	NA	Intergenic	L2|LINE|L2	5104	NR_024258	100170220		NR_024258		SNAR-E	-	small NF90 (ILF3) associated RNA E	snRNA
137386	chr2	196209571	196210050	+	0	NA	intron (NM_001348768, intron 28 of 28)	AluY|SINE|Alu	-38232	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
203554	chr7	890971	891130	+	0	NA	exon (NM_015949, exon 5 of 9)	exon (NM_015949, exon 5 of 9)	14496	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
26636	chr10	22483221	22483480	+	0	NA	Intergenic	Intergenic	-45421	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
100131	chr17	58382251	58382950	+	0	NA	intron (NM_017763, intron 2 of 9)	intron (NM_017763, intron 2 of 9)	20121	NM_001305545	54894		NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
123000	chr19	50929901	50930180	+	0	NA	Intergenic	Intergenic	-19302	NM_004917	9622		NM_004917	ENSG00000167749	KLK4	AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein	kallikrein related peptidase 4	protein-coding
55153	chr12	98754171	98754330	+	0	NA	intron (NM_020140, intron 9 of 10)	intron (NM_020140, intron 9 of 10)	108950	NM_181869	317		NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
65905	chr14	55277201	55277530	+	0	NA	intron (NM_152231, intron 1 of 1)	AluJr4|SINE|Alu	5211	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
186716	chr5	139177851	139177950	+	0	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	20468	NM_001037633	64374		NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
163111	chr3	50119221	50119480	+	0	NA	TTS (NM_005778)	TTS (NM_005778)	-18362	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
111033	chr19	3088401	3088800	+	0	NA	Intergenic	L2a|LINE|L2	-5762	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
184414	chr5	98919551	98919850	+	0	NA	intron (NR_157078, intron 2 of 36)	L1MC3|LINE|L1	-8862	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
119022	chr19	38912771	38913450	+	0	NA	promoter-TSS (NM_001243212)	promoter-TSS (NM_001243212)	-952	NM_001243212	643669		NM_001243212	ENSG00000262484	CCER2	-	coiled-coil glutamate rich protein 2	protein-coding
116568	chr19	18236871	18237430	+	0	NA	intron (NM_000923, intron 1 of 15)	intron (NM_000923, intron 1 of 15)	-2771	NM_001330172	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
233961	chrX	2632421	2632700	+	0	NA	intron (NR_033380, intron 8 of 8)	intron (NR_033380, intron 8 of 8)	-17213	NR_037842	100359394		NR_037842	ENSG00000230542	LINC00102	NCRNA00102	long intergenic non-protein coding RNA 102	ncRNA
8422	chr1	40452471	40452630	+	0	NA	intron (NM_001369565, intron 2 of 5)	L1MC5a|LINE|L1	2074	NM_023070	65243		NM_023070	ENSG00000187801	ZFP69B	ZKSCAN23B|ZNF643|ZSCAN54B	ZFP69 zinc finger protein B	protein-coding
135696	chr2	168889801	168890830	+	0	NA	intron (NM_020675, intron 1 of 6)	CpG	115	NM_020675	57405		NM_020675	ENSG00000152253	SPC25	AD024|SPBC25|hSpc25	SPC25 component of NDC80 kinetochore complex	protein-coding
3157	chr1	12601071	12601630	+	0	NA	intron (NM_004753, intron 1 of 5)	MLT1K|LTR|ERVL-MaLR	-4737	NM_001324370	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
217819	chr8	37179771	37180030	+	0	NA	Intergenic	(CTCCCCC)n|Simple_repeat|Simple_repeat	314013	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
143462	chr20	30816121	30816600	+	0	NA	Intergenic	CpG	-412898	NR_045115	140678		NR_045115		MLLT10P1	MLLT10L|bA348I14.3	MLLT10 pseudogene 1	pseudo
214866	chr7	151380571	151380730	+	0	NA	TTS (NM_001284262)	TTS (NM_001284262)	-28511	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
235190	chrX	41338351	41338680	+	0	NA	non-coding (NR_126094, exon 3 of 3)	non-coding (NR_126094, exon 3 of 3)	4349	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
178102	chr4	140568701	140569350	+	0	NA	promoter-TSS (NM_021833)	promoter-TSS (NM_021833)	-64	NM_021833	7350		NM_021833	ENSG00000109424	UCP1	SLC25A7|UCP	uncoupling protein 1	protein-coding
80953	chr16	3863421	3864400	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	16210	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
153792	chr22	29601521	29602230	+	0	NA	Intergenic	MIRb|SINE|MIR	-1681	NM_016418	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
113712	chr19	10436271	10437230	+	0	NA	intron (NM_001111309, intron 1 of 14)	intron (NM_001111309, intron 1 of 14)	4315	NM_001111309	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
59257	chr13	24061051	24061250	+	0	NA	intron (NM_001286792, intron 3 of 14)	L1PREC2|LINE|L1	81348	NR_104595	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
45115	chr11	117146251	117146550	+	0	NA	intron (NR_110282, intron 1 of 2)	intron (NR_110282, intron 1 of 2)	2113	NM_002572	5049		NM_002572	ENSG00000168092	PAFAH1B2	HEL-S-303	platelet activating factor acetylhydrolase 1b catalytic subunit 2	protein-coding
197532	chr6	77474371	77474530	+	0	NA	Intergenic	LTR27|LTR|ERV1	-10959	NM_000863	3351		NM_000863	ENSG00000135312	HTR1B	5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12	5-hydroxytryptamine receptor 1B	protein-coding
96632	chr17	40588621	40589150	+	0	NA	Intergenic	L1PB1|LINE|L1	-23413	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
97907	chr17	45129001	45129200	+	0	NA	intron (NM_133373, intron 1 of 14)	MIR|SINE|MIR	3415	NM_133373	113026		NM_133373	ENSG00000161714	PLCD3	PLC-delta-3	phospholipase C delta 3	protein-coding
73041	chr15	40870921	40871180	+	0	NA	Intergenic	AluSg|SINE|Alu	3184	NM_133639	171177		NM_133639	ENSG00000104140	RHOV	ARHV|CHP|WRCH2	ras homolog family member V	protein-coding
149131	chr21	17720401	17720600	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	72009	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
176275	chr4	87066521	87066880	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	59699	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
177960	chr4	139018901	139019530	+	0	NA	intron (NM_012118, intron 1 of 2)	AluSx|SINE|Alu	3434	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
135940	chr2	171927871	171928230	+	0	NA	intron (NR_027862, intron 2 of 9)	AluSq2|SINE|Alu	5589	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
122328	chr19	49147351	49148250	+	0	NA	intron (NR_103842, intron 22 of 28)	MER5A1|DNA|hAT-Charlie	7596	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
123281	chr19	53541871	53542380	+	0	NA	intron (NM_001317113, intron 2 of 4)	intron (NM_001317113, intron 2 of 4)	3337	NM_001253800	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
93929	chr17	21300451	21300750	+	0	NA	exon (NM_002756, exon 4 of 12)	exon (NM_002756, exon 4 of 12)	12564	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
37277	chr11	14682951	14683250	+	0	NA	intron (NM_001363569, intron 1 of 15)	AluSp|SINE|Alu	39296	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
136095	chr2	173451051	173451380	+	0	NA	Intergenic	Intergenic	96343	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
18502	chr1	161740151	161740600	+	0	NA	Intergenic	Intergenic	-9411	NM_007240	11266		NM_007240	ENSG00000081721	DUSP12	DUSP1|YVH1	dual specificity phosphatase 12	protein-coding
202637	chr6	158757721	158758700	+	0	NA	intron (NM_001318745, intron 11 of 14)	AluSc|SINE|Alu	6543	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
86685	chr16	67519471	67519630	+	0	NA	intron (NR_104656, intron 1 of 1)	intron (NR_104656, intron 1 of 1)	9195	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
132639	chr2	108718851	108720580	+	0	NA	intron (NM_006267, intron 1 of 28)	CpG	233	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
19550	chr1	179025471	179026980	+	0	NA	intron (NM_001324311, intron 1 of 7)	CpG	101	NM_001324311	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
124548	chr2	399151	399650	+	0	NA	Intergenic	Intergenic	83116	NR_146953	105373350		NR_146953		LINC01865	-	long intergenic non-protein coding RNA 1865	ncRNA
233855	chrX	1517351	1517750	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	19635	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
143575	chr20	31668921	31669180	+	0	NA	intron (NR_134257, intron 1 of 2)	AluJo|SINE|Alu	31138	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
226846	chr9	77982601	77983650	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	48686	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
218239	chr8	42138621	42139050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-14111	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
52734	chr12	56627851	56627950	+	0	NA	intron (NM_013449, intron 1 of 28)	AluSq2|SINE|Alu	2426	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
239008	chrY	2841351	2842330	+	0	NA	intron (NM_001008, intron 1 of 6)	intron (NM_001008, intron 1 of 6)	238	NM_001008	6192		NM_001008	ENSG00000129824	RPS4Y1	RPS4Y|S4	ribosomal protein S4 Y-linked 1	protein-coding
159130	chr3	12642451	12642880	+	0	NA	intron (NM_001354691, intron 1 of 16)	intron (NM_001354691, intron 1 of 16)	20843	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
84053	chr16	29580471	29580630	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSx3|SINE|Alu	14542	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
219929	chr8	86473671	86473850	+	0	NA	3' UTR (NM_001286719, exon 9 of 9)	3' UTR (NM_001286719, exon 9 of 9)	34926	NM_016033	51115		NM_016033	ENSG00000176623	RMDN1	CGI-90|FAM82B|RMD-1|RMD1	regulator of microtubule dynamics 1	protein-coding
27332	chr10	30534271	30534880	+	0	NA	Intergenic	AluSx|SINE|Alu	95178	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
11414	chr1	89709351	89709880	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	76495	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
57591	chr12	122415901	122416600	+	0	NA	intron (NM_001247997, intron 1 of 25)	intron (NM_001247997, intron 1 of 25)	6319	NM_001247997	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
221952	chr8	129938851	129941330	+	0	NA	promoter-TSS (NM_001353300)	promoter-TSS (NM_001353300)	-279	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
1784	chr1	6100501	6100730	+	0	NA	3' UTR (NM_003636, exon 16 of 16)	3' UTR (NM_003636, exon 16 of 16)	54727	NM_001199863	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
104267	chr17	80781971	80782130	+	0	NA	intron (NM_020761, intron 6 of 33)	intron (NM_020761, intron 6 of 33)	23582	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
179745	chr5	236401	236600	+	0	NA	exon (NM_001294332, exon 9 of 14)	exon (NM_001294332, exon 9 of 14)	18180	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
234269	chrX	13367971	13368330	+	0	NA	Intergenic	Tigger18a|DNA|TcMar-Tigger	32909	NR_045260	100133123		NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA
49139	chr12	14938551	14938750	+	0	NA	promoter-TSS (NM_152321)	promoter-TSS (NM_152321)	-113	NM_152321	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
42	chr1	194821	195650	+	0	NA	Intergenic	Intergenic	-7277	NR_107062	102465909		NR_107062	ENSG00000273874	MIR6859-2	hsa-mir-6859-2	microRNA 6859-2	ncRNA
98960	chr17	48655971	48656550	+	0	NA	Intergenic	LTR52|LTR|ERVL	-23701	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
74529	chr15	60483101	60483500	+	0	NA	intron (NR_120341, intron 1 of 4)	L2c|LINE|L2	4122	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
186133	chr5	134155001	134155350	+	0	NA	3' UTR (NM_170679, exon 6 of 6)	3' UTR (NM_170679, exon 6 of 6)	21775	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
237216	chrX	109533171	109533330	+	0	NA	Intergenic	L1MB7|LINE|L1	-2574	NM_018698	55916		NM_018698	ENSG00000101888	NXT2	P15-2	nuclear transport factor 2 like export factor 2	protein-coding
224082	chr9	4318721	4318980	+	0	NA	Intergenic	L1MC4|LINE|L1	-18782	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
130635	chr2	86081851	86082230	+	0	NA	intron (NM_015425, intron 7 of 33)	AluJb|SINE|Alu	23846	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
219194	chr8	66610001	66610930	+	0	NA	intron (NM_001294282, intron 1 of 14)	intron (NM_001294282, intron 1 of 14)	2753	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
108499	chr18	74063151	74063250	+	0	NA	Intergenic	Intergenic	84634	NM_152676	201456		NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
238497	chrX	153600901	153601230	+	0	NA	Intergenic	Intergenic	1725	NR_131982	105373383		NR_131982	ENSG00000293160	LOC105373383	-	uncharacterized LOC105373383	ncRNA
221602	chr8	125514521	125515330	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	82716	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
83367	chr16	25126171	25126330	+	0	NA	intron (NM_001032391, intron 1 of 8)	intron (NM_001032391, intron 1 of 8)	14508	NM_001032391	51451		NM_016015	ENSG00000205629	LCMT1	CGI-68|LCMT|PPMT1	leucine carboxyl methyltransferase 1	protein-coding
228253	chr9	97991101	97991300	+	0	NA	intron (NM_006401, intron 1 of 6)	AluJo|SINE|Alu	7859	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
91763	chr17	6856021	6856280	+	0	NA	intron (NR_002710, intron 2 of 13)	MER89-int|LTR|ERV1	2574	NR_002710	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
98995	chr17	48744451	48744930	+	0	NA	Intergenic	Intergenic	-15940	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
51840	chr12	53461771	53462130	+	0	NA	intron (NM_031989, intron 7 of 14)	AluJb|SINE|Alu	-2518	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
102563	chr17	75853321	75853580	+	0	NA	intron (NM_012478, intron 1 of 7)	intron (NM_012478, intron 1 of 7)	1885	NM_012478	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
90541	chr17	1494371	1494850	+	0	NA	TTS (NM_001135642)	TTS (NM_001135642)	-1924	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
111339	chr19	3645901	3646100	+	0	NA	exon (NM_012398, exon 11 of 18)	exon (NM_012398, exon 11 of 18)	-19185	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
83678	chr16	28377071	28377930	+	0	NA	Intergenic	SVA_B|Retroposon|SVA	13551	NR_106922	102465520		NR_106922	ENSG00000275429	MIR6862-1	hsa-mir-6862-1	microRNA 6862-1	ncRNA
160550	chr3	30680371	30681080	+	0	NA	intron (NM_001024847, intron 6 of 7)	intron (NM_001024847, intron 6 of 7)	74124	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
97336	chr17	43272321	43273230	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	5393	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
223311	chr8	143810471	143810650	+	0	NA	exon (NM_015356, exon 13 of 36)	exon (NM_015356, exon 13 of 36)	2482	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
238511	chrX	153667621	153668380	+	0	NA	Intergenic	Intergenic	5288	NM_001135740	139728		NM_198452	ENSG00000130822	PNCK	BSTK3|CaMK1b	pregnancy up-regulated nonubiquitous CaM kinase	protein-coding
88731	chr16	86044251	86044580	+	0	NA	Intergenic	Intergenic	126068	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
183592	chr5	80189051	80190100	+	0	NA	intron (NM_001174072, intron 2 of 11)	intron (NM_001174072, intron 2 of 11)	66473	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
146830	chr20	51408371	51408530	+	0	NA	intron (NM_012340, intron 9 of 10)	AluSz|SINE|Alu	44527	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
12616	chr1	109094971	109095150	+	0	NA	non-coding (NR_136242, exon 4 of 4)	non-coding (NR_136242, exon 4 of 4)	4296	NR_136242	56900		NM_020141	ENSG00000215717	TMEM167B	AD-020|C1orf119	transmembrane protein 167B	protein-coding
178474	chr4	148426551	148427130	+	0	NA	intron (NR_148974, intron 2 of 6)	intron (NR_148974, intron 2 of 6)	15574	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
238836	chrX	154462371	154462880	+	0	NA	intron (NM_017514, intron 4 of 32)	intron (NM_017514, intron 4 of 32)	4344	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
57262	chr12	121586921	121587180	+	0	NA	Intergenic	AluSz|SINE|Alu	-6027	NM_032590	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
56799	chr12	120207321	120207580	+	0	NA	intron (NR_038924, intron 2 of 3)	intron (NR_038924, intron 2 of 3)	6159	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
121059	chr19	45864001	45864750	+	0	NA	promoter-TSS (NM_004497)	promoter-TSS (NM_004497)	49	NM_004497	3171		NM_004497	ENSG00000170608	FOXA3	FKHH3|HNF3G|TCF3G	forkhead box A3	protein-coding
119944	chr19	41869451	41869780	+	0	NA	promoter-TSS (NR_106855)	promoter-TSS (NR_106855)	-12	NR_106855	102465478		NR_106855	ENSG00000276926	MIR6797	hsa-mir-6797	microRNA 6797	ncRNA
231581	chr9	131526771	131527430	+	0	NA	intron (NR_134666, intron 5 of 7)	AluJb|SINE|Alu	4163	NM_031432	83549		NM_031432	ENSG00000130717	UCK1	URK1	uridine-cytidine kinase 1	protein-coding
156831	chr22	41944171	41944650	+	0	NA	TTS (NM_001304371)	TTS (NM_001304371)	2344	NM_001304373	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
214898	chr7	151435251	151436150	+	0	NA	intron (NM_001308292, intron 2 of 2)	intron (NM_001308292, intron 2 of 2)	-2061	NR_037468	100500835		NR_037468	ENSG00000265810	MIR3907	-	microRNA 3907	ncRNA
124989	chr2	9416771	9417130	+	0	NA	intron (NR_134953, intron 1 of 4)	L2a|LINE|L2	5641	NR_134951	9270		NM_004763	ENSG00000119185	ITGB1BP1	ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B	integrin subunit beta 1 binding protein 1	protein-coding
204064	chr7	2018001	2018200	+	0	NA	intron (NM_001304524, intron 10 of 16)	intron (NM_001304524, intron 10 of 16)	70952	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
21499	chr1	205739771	205740450	+	0	NA	intron (NM_022731, intron 1 of 6)	AluSz|SINE|Alu	10072	NM_022731	64710		NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding
25491	chr10	7028301	7029030	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	158119	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
25805	chr10	11189671	11190050	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	24830	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
135668	chr2	168478251	168478550	+	0	NA	intron (NM_203463, intron 1 of 9)	HAL1|LINE|L1	22128	NM_001256126	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
177648	chr4	121225271	121225630	+	0	NA	intron (NM_001244764, intron 1 of 12)	intron (NM_001244764, intron 1 of 12)	2033	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
64394	chr14	24163871	24164230	+	0	NA	intron (NM_001385402, intron 5 of 8)	intron (NM_001385402, intron 5 of 8)	2785	NM_001385400	10379		NM_006084	ENSG00000213928	IRF9	IRF-9|ISGF3|ISGF3G|p48	interferon regulatory factor 9	protein-coding
42374	chr11	68818071	68818330	+	0	NA	intron (NM_001031847, intron 1 of 18)	intron (NM_001031847, intron 1 of 18)	23716	NM_001876	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
116596	chr19	18264411	18265300	+	0	NA	exon (NM_001145304, exon 3 of 4)	exon (NM_001145304, exon 3 of 4)	-9436	NR_036575	729966		NM_001396036	ENSG00000284797	CIST1	-	colon, intestine and stomach enriched 1	protein-coding
156516	chr22	41379121	41379600	+	0	NA	intron (NM_001145398, intron 1 of 3)	AluSp|SINE|Alu	-2582	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
129641	chr2	70144721	70145650	+	0	NA	Intergenic	Intergenic	-19869	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
185206	chr5	119435421	119435930	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-16822	NM_001199291	3295		NM_000414	ENSG00000133835	HSD17B4	DBP|MFE-2|MFP-2|MPF-2|PRLTS1|SDR8C1	hydroxysteroid 17-beta dehydrogenase 4	protein-coding
58173	chr12	124975451	124975750	+	0	NA	intron (NM_032656, intron 5 of 26)	intron (NM_032656, intron 5 of 26)	13531	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
132701	chr2	108988601	108989350	+	0	NA	5' UTR (NM_022336, exon 1 of 12)	5' UTR (NM_022336, exon 1 of 12)	245	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
239464	chrY	56724451	56724550	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-229755	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
70686	chr14	103099171	103099330	+	0	NA	promoter-TSS (NM_001077594)	promoter-TSS (NM_001077594)	-894	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
165024	chr3	71399421	71399680	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-94779	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
218167	chr8	41957901	41958400	+	0	NA	intron (NM_001305878, intron 8 of 13)	intron (NM_001305878, intron 8 of 13)	-61409	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
293	chr1	953821	954080	+	0	NA	intron (NM_015658, intron 7 of 18)	intron (NM_015658, intron 7 of 18)	5306	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
20824	chr1	201408221	201408580	+	0	NA	3' UTR (NM_003281, exon 8 of 8)	3' UTR (NM_003281, exon 8 of 8)	-9076	NM_005558	3898		NM_005558	ENSG00000159166	LAD1	LadA	ladinin 1	protein-coding
87693	chr16	74666521	74667600	+	0	NA	promoter-TSS (NM_018124)	promoter-TSS (NM_018124)	-183	NM_001370542	55159		NM_018124	ENSG00000168411	RFWD3	FANCW|RNF201	ring finger and WD repeat domain 3	protein-coding
62230	chr13	98522851	98523150	+	0	NA	promoter-TSS (NM_003576)	promoter-TSS (NM_003576)	-875	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
145633	chr20	44810221	44810780	+	0	NA	promoter-TSS (NM_182970)	promoter-TSS (NM_182970)	46	NM_001205317	140730		NM_182970	ENSG00000101098	RIMS4	C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma	regulating synaptic membrane exocytosis 4	protein-coding
226879	chr9	78212071	78212830	+	0	NA	Intergenic	Intergenic	-23625	NM_001098802	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
120981	chr19	45722571	45722730	+	0	NA	intron (NM_001329633, intron 1 of 1)	AluY|SINE|Alu	846	NM_001329634	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
32467	chr10	102650471	102650730	+	0	NA	intron (NM_001345950, intron 1 of 4)	intron (NM_001345950, intron 1 of 4)	6105	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
223817	chr8	144830021	144830380	+	0	NA	intron (NM_001349807, intron 3 of 4)	intron (NM_001349807, intron 3 of 4)	2640	NM_001282795	7553		NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
77237	chr15	81293631	81294750	+	0	NA	intron (NM_172217, intron 12 of 18)	intron (NM_172217, intron 12 of 18)	-2780	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
137501	chr2	197158501	197159080	+	0	NA	intron (NM_153697, intron 2 of 9)	L2b|LINE|L2	-39201	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
181572	chr5	43191051	43191150	+	0	NA	Intergenic	MIR|SINE|MIR	-1125	NM_153361	167359		NM_153361	ENSG00000177453	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
67033	chr14	67601701	67602100	+	0	NA	Intergenic	Intergenic	-1599	NM_001363694	5283		NM_004569	ENSG00000100564	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis class H	protein-coding
60677	chr13	43094901	43095150	+	0	NA	intron (NM_013238, intron 5 of 5)	L1MEg1|LINE|L1	-18140	NR_047013	100874159		NR_047013		LINC00400	-	long intergenic non-protein coding RNA 400	ncRNA
66546	chr14	61867301	61867500	+	0	NA	intron (NM_001367652, intron 1 of 6)	L1ME1|LINE|L1	54697	NM_001367656	83851		NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r	synaptotagmin 16	protein-coding
107664	chr18	49026321	49026580	+	0	NA	intron (NR_148999, intron 3 of 4)	intron (NR_148999, intron 3 of 4)	2747	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
209872	chr7	90464251	90464350	+	0	NA	Intergenic	THE1C-int|LTR|ERVL-MaLR	-5339	NM_001365443	102723899		NM_001365443	ENSG00000251154	PTTG1IP2	-	PTTG1IP family member 2	protein-coding
110684	chr19	2277701	2277930	+	0	NA	intron (NM_198532, intron 3 of 3)	AluSg|SINE|Alu	4360	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
156337	chr22	40726371	40727580	+	0	NA	Intergenic	AluSp|SINE|Alu	47491	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
153825	chr22	29827771	29828050	+	0	NA	intron (NM_001369940, intron 1 of 19)	(AC)n|Simple_repeat|Simple_repeat	10364	NM_001369933	84164		NM_032204	ENSG00000100325	ASCC2	ASC1p100|p100	activating signal cointegrator 1 complex subunit 2	protein-coding
83169	chr16	23468701	23469130	+	0	NA	exon (NM_015044, exon 16 of 17)	exon (NM_015044, exon 16 of 17)	-15726	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
212956	chr7	130950871	130951100	+	0	NA	intron (NR_109853, intron 4 of 5)	intron (NR_109853, intron 4 of 5)	37521	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
145734	chr20	45062501	45063700	+	0	NA	intron (NM_001352385, intron 11 of 11)	AluJb|SINE|Alu	38027	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
7153	chr1	32227471	32228230	+	0	NA	intron (NM_003757, intron 7 of 11)	intron (NM_003757, intron 7 of 11)	-5479	NR_133636	56063		NM_019118	ENSG00000160055	TMEM234	AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7	transmembrane protein 234	protein-coding
125392	chr2	11465421	11466900	+	0	NA	promoter-TSS (NM_001278278)	promoter-TSS (NM_001278278)	1	NM_001278276	1876		NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
60368	chr13	40926851	40927550	+	0	NA	Intergenic	AluY|SINE|Alu	-5426	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
110783	chr19	2431721	2432650	+	0	NA	intron (NM_032737, intron 9 of 11)	intron (NM_032737, intron 9 of 11)	2815	NR_106958	102466806		NR_106958	ENSG00000283728	MIR7108	hsa-mir-7108	microRNA 7108	ncRNA
183747	chr5	81301201	81302580	+	0	NA	promoter-TSS (NR_034121)	promoter-TSS (NR_034121)	303	NM_001131035	84240		NM_032280	ENSG00000131732	ZCCHC9	PPP1R41	zinc finger CCHC-type containing 9	protein-coding
212606	chr7	129163871	129164330	+	0	NA	intron (NM_178562, intron 4 of 7)	intron (NM_178562, intron 4 of 7)	19393	NM_178562	340348		NM_178562	ENSG00000158457	TSPAN33	PEN|PEN.|TSPAN-33	tetraspanin 33	protein-coding
39762	chr11	61896621	61897000	+	0	NA	TTS (NM_013401)	TTS (NM_013401)	-5265	NM_021727	3995		NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
107763	chr18	50819571	50820300	+	0	NA	promoter-TSS (NM_031939)	promoter-TSS (NM_031939)	81	NM_001369511	83876		NM_031939	ENSG00000134042	MRO	B29|C18orf3	maestro	protein-coding
127682	chr2	43197051	43197900	+	0	NA	Intergenic	Intergenic	29131	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
49337	chr12	22047651	22047750	+	0	NA	intron (NR_135117, intron 1 of 6)	intron (NR_135117, intron 1 of 6)	1482	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
112100	chr19	5574821	5575080	+	0	NA	Intergenic	Intergenic	-6916	NR_027064								
188668	chr5	157257471	157258780	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	-7998	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
181465	chr5	41924721	41926030	+	0	NA	promoter-TSS (NM_012176)	promoter-TSS (NM_012176)	94	NM_012176	26272		NM_012176	ENSG00000151876	FBXO4	FBX4	F-box protein 4	protein-coding
130552	chr2	85699001	85699200	+	0	NA	TTS (NM_012483)	TTS (NM_012483)	4742	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
138206	chr2	202687151	202687450	+	0	NA	intron (NM_173511, intron 1 of 7)	L1ME1|LINE|L1	52331	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
106487	chr18	14458121	14458900	+	0	NA	Intergenic	CpG	40196	NR_024076	440224		NR_024076	ENSG00000293262	CXADRP3	-	CXADR pseudogene 3	pseudo
195577	chr6	37507771	37508800	+	0	NA	intron (NR_126057, intron 1 of 3)	intron (NR_126057, intron 1 of 3)	937	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
236489	chrX	71670051	71670450	+	0	NA	intron (NM_001323075, intron 2 of 5)	intron (NM_001323075, intron 2 of 5)	2548	NM_001323075	101059915		NM_001323075	ENSG00000283599	LOC101059915	-	chromosome X open reading frame 49-like	protein-coding
16441	chr1	154574801	154575000	+	0	NA	intron (NM_000748, intron 5 of 5)	intron (NM_000748, intron 5 of 5)	7122	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
155185	chr22	37797771	37798330	+	0	NA	Intergenic	L2c|LINE|L2	-7179	NM_005318	3005		NM_005318	ENSG00000189060	H1-0	H1.0|H10|H1F0|H1FV	H1.0 linker histone	protein-coding
230261	chr9	127909771	127910130	+	0	NA	intron (NM_175040, intron 4 of 4)	intron (NM_175040, intron 4 of 4)	-4602	NR_104629	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
199758	chr6	125830451	125830550	+	0	NA	intron (NM_001199621, intron 2 of 14)	AluJr|SINE|Alu	-11642	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
58008	chr12	124375721	124376180	+	0	NA	intron (NM_006312, intron 20 of 48)	intron (NM_006312, intron 20 of 48)	-38708	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
37757	chr11	31995751	31996300	+	0	NA	Intergenic	MER96B|DNA|hAT-Tip100	45293	NR_120526	100506675		NR_120526	ENSG00000254584	LINC03031	-	long intergenic non-protein coding RNA 3031	ncRNA
204408	chr7	3082621	3083030	+	0	NA	Intergenic	Intergenic	-38958	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
208085	chr7	56097651	56098150	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-4904	NR_047689	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
88120	chr16	81577701	81578750	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-33123	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
153547	chr22	26592071	26593150	+	0	NA	Intergenic	L2b|LINE|L2	-2478	NM_001362922	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
84786	chr16	31029201	31029600	+	0	NA	Intergenic	Intergenic	-3695	NM_001272096	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
215460	chr7	157981871	157982030	+	0	NA	intron (NM_130842, intron 10 of 21)	intron (NM_130842, intron 10 of 21)	127365	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
141595	chr2	241631721	241632080	+	0	NA	intron (NM_015963, intron 2 of 5)	AluSx|SINE|Alu	5258	NM_015963	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
221420	chr8	123763421	123764380	+	0	NA	Intergenic	Intergenic	-4539	NM_144963	157769		NM_144963	ENSG00000176853	FAM91A1	-	family with sequence similarity 91 member A1	protein-coding
175627	chr4	76198221	76199100	+	0	NA	intron (NM_001204255, intron 1 of 8)	intron (NM_001204255, intron 1 of 8)	15164	NM_001204255	950		NM_005506	ENSG00000138760	SCARB2	AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII	scavenger receptor class B member 2	protein-coding
52472	chr12	55966101	55967780	+	0	NA	promoter-TSS (NM_001320122)	promoter-TSS (NM_001320122)	110	NM_001290230	1017		NM_001798	ENSG00000123374	CDK2	CDKN2|p33(CDK2)	cyclin dependent kinase 2	protein-coding
45534	chr11	118751651	118751950	+	0	NA	3' UTR (NM_001257191, exon 14 of 14)	3' UTR (NM_001257191, exon 14 of 14)	39148	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
10134	chr1	59699301	59699580	+	0	NA	TTS (NR_103473)	TTS (NR_103473)	33856	NR_039861	100616409		NR_039861	ENSG00000266150	MIR4711	-	microRNA 4711	ncRNA
125143	chr2	9979871	9980230	+	0	NA	intron (NM_198182, intron 8 of 15)	intron (NM_198182, intron 8 of 15)	28357	NM_198182	29841		NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
201015	chr6	141381071	141381230	+	0	NA	Intergenic	AluY|SINE|Alu	697336	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
215791	chr8	2193071	2193430	+	0	NA	Intergenic	Intergenic	116661	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
189219	chr5	171450721	171451650	+	0	NA	intron (NM_003862, intron 4 of 4)	intron (NM_003862, intron 4 of 4)	31538	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
64024	chr14	22512051	22513180	+	0	NA	Intergenic	Intergenic	-29656	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
95580	chr17	36964121	36964380	+	0	NA	intron (NM_012138, intron 4 of 11)	L2|LINE|L2	15296	NM_012138	26574		NM_012138	ENSG00000275700	AATF	BFR2|CHE-1|CHE1|DED	apoptosis antagonizing transcription factor	protein-coding
188696	chr5	157296871	157297430	+	0	NA	intron (NM_014376, intron 5 of 30)	L2a|LINE|L2	27826	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
96415	chr17	40167021	40167480	+	0	NA	intron (NM_007359, intron 8 of 13)	AluSg|SINE|Alu	5317	NR_106926	102466986		NR_106926	ENSG00000284144	MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
195320	chr6	36603921	36604750	+	0	NA	non-coding (NR_036610, exon 7 of 7)	non-coding (NR_036610, exon 7 of 7)	9973	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
188940	chr5	160472701	160472950	+	0	NA	intron (NR_132748, intron 1 of 1)	(TCTCCC)n|Simple_repeat|Simple_repeat	-1577	NR_036095	100422938		NR_036095		MIR3142	-	microRNA 3142	ncRNA
231306	chr9	130053321	130055300	+	0	NA	intron (NM_001136557, intron 1 of 19)	CpG	404	NM_001136557	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
190862	chr6	2038051	2038380	+	0	NA	intron (NM_001253846, intron 4 of 10)	intron (NM_001253846, intron 4 of 10)	137776	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
151772	chr22	18023521	18023800	+	0	NA	intron (NM_015241, intron 1 of 31)	CpG	901	NM_015241	57553		NM_015241	ENSG00000243156	MICAL3	MICAL-3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
197905	chr6	89364571	89364730	+	0	NA	TTS (NM_021244)	TTS (NM_021244)	-11928	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
69116	chr14	92519371	92520830	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	6319	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
172917	chr4	3499101	3500250	+	0	NA	intron (NM_001301071, intron 8 of 9)	intron (NM_001301071, intron 8 of 9)	15131	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
35385	chr11	1330501	1330700	+	0	NA	Intergenic	L1MB2|LINE|L1	20892	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
81988	chr16	11898351	11898650	+	0	NA	intron (NM_001130007, intron 1 of 14)	AluSp|SINE|Alu	17456	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
50889	chr12	49263271	49263430	+	0	NA	intron (NM_001303115, intron 3 of 5)	(TTCCCTA)n|Simple_repeat|Simple_repeat	-1732	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
13802	chr1	117558571	117558930	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	47020	NR_121626	100996263		NR_121626	ENSG00000236866	TENT5C-DT	-	TENT5C divergent transcript	ncRNA
72585	chr15	34968951	34970130	+	0	NA	exon (NM_014691, exon 1 of 35)	exon (NM_014691, exon 1 of 35)	202	NM_014691	9716		NM_014691	ENSG00000021776	AQR	IBP160|fSAP164	aquarius intron-binding spliceosomal factor	protein-coding
225993	chr9	41276171	41276330	+	0	NA	Intergenic	L1PBa|LINE|L1	-42415	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
134705	chr2	144501401	144501800	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-18014	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
828	chr1	1572051	1572600	+	0	NA	intron (NM_014188, intron 1 of 4)	AluY|SINE|Alu	2538	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
73610	chr15	44560651	44561550	+	0	NA	exon (NM_001284336, exon 6 of 6)	exon (NM_001284336, exon 6 of 6)	23953	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
74860	chr15	63544451	63544750	+	0	NA	intron (NR_046342, intron 4 of 15)	intron (NR_046342, intron 4 of 15)	40007	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
118809	chr19	38508701	38509100	+	0	NA	intron (NM_000540, intron 58 of 105)	L2a|LINE|L2	75209	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
234137	chrX	10013671	10013830	+	0	NA	Intergenic	AluSg|SINE|Alu	-1504	NM_015691	55841		NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
75016	chr15	64044071	64044230	+	0	NA	intron (NM_014326, intron 1 of 11)	MamTip2|DNA|hAT-Tip100	2335	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
49906	chr12	39587221	39587600	+	0	NA	intron (NM_005164, intron 6 of 9)	MER20|DNA|hAT-Charlie	32393	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
24735	chr1	248372521	248372780	+	0	NA	Intergenic	L1MA2|LINE|L1	11069	NM_001004696	127074		NM_001004696	ENSG00000196944	OR2T4	OR1-60|OR2T4Q	olfactory receptor family 2 subfamily T member 4	protein-coding
104139	chr17	80380451	80380750	+	0	NA	intron (NM_001256071, intron 55 of 67)	intron (NM_001256071, intron 55 of 67)	-34567	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
81239	chr16	4600101	4600850	+	0	NA	TTS (NM_001145011)	TTS (NM_001145011)	14413	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
192732	chr6	26371201	26371400	+	0	NA	intron (NM_001197249, intron 4 of 9)	L1ME4b|LINE|L1	3122	NM_001197246	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
85231	chr16	48156721	48156980	+	0	NA	Intergenic	Intergenic	-10080	NM_033226	94160		NM_033226	ENSG00000140798	ABCC12	MRP9	ATP binding cassette subfamily C member 12	protein-coding
59777	chr13	30155921	30156380	+	0	NA	Intergenic	Intergenic	-3076	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
197655	chr6	85401401	85401800	+	0	NA	intron (NR_134633, intron 3 of 3)	intron (NR_134633, intron 3 of 3)	3202	NR_134633	101928820		NR_134633	ENSG00000234155	LINC02535	-	long intergenic non-protein coding RNA 2535	ncRNA
113441	chr19	9818421	9820280	+	0	NA	promoter-TSS (NM_001316937)	promoter-TSS (NM_001316937)	-271	NM_001316940	54850		NM_017703	ENSG00000127452	FBXL12	Fbl12	F-box and leucine rich repeat protein 12	protein-coding
79464	chr16	733521	734780	+	0	NA	intron (NM_022493, intron 6 of 10)	intron (NM_022493, intron 6 of 10)	6847	NM_022493	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
5391	chr1	25473621	25474150	+	0	NA	intron (NM_018202, intron 6 of 10)	intron (NM_018202, intron 6 of 10)	42988	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
60924	chr13	46210721	46212230	+	0	NA	promoter-TSS (NM_001282460)	promoter-TSS (NM_001282460)	-453	NM_001282460	220416		NM_001024609	ENSG00000173988	LRRC63	-	leucine rich repeat containing 63	protein-coding
165942	chr3	107597871	107598230	+	0	NA	intron (NM_020235, intron 2 of 16)	Charlie2a|DNA|hAT-Charlie	75088	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
174582	chr4	40243391	40244000	+	0	NA	exon (NM_004310, exon 3 of 3)	exon (NM_004310, exon 3 of 3)	46664	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
53497	chr12	66301751	66303020	+	0	NA	promoter-TSS (NR_135080)	promoter-TSS (NR_135080)	-108	NM_001370285	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
74895	chr15	63597951	63598050	+	0	NA	intron (NM_203373, intron 1 of 1)	intron (NM_203373, intron 1 of 1)	613	NM_203373	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
74401	chr15	58931201	58931400	+	0	NA	intron (NR_135043, intron 1 of 18)	intron (NR_135043, intron 1 of 18)	2379	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
116825	chr19	18566271	18566430	+	0	NA	intron (NM_001171948, intron 4 of 5)	AluY|SINE|Alu	-5380	NM_001321017	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
69323	chr14	93230971	93231330	+	0	NA	Intergenic	Intergenic	23894	NM_175748	55148		NM_175748	ENSG00000012963	UBR7	C14orf130|LICAS	ubiquitin protein ligase E3 component n-recognin 7	protein-coding
63795	chr14	21307401	21307830	+	0	NA	intron (NM_020366, intron 6 of 24)	intron (NM_020366, intron 6 of 24)	-9938	NM_001377950	57096		NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	RPGR interacting protein 1	protein-coding
205649	chr7	22821101	22821300	+	0	NA	intron (NR_168014, intron 1 of 2)	AluY|SINE|Alu	1649	NR_168015	54543		NM_019059	ENSG00000196683	TOMM7	GMPGS|TOM7	translocase of outer mitochondrial membrane 7	protein-coding
223254	chr8	143683271	143683430	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-1129	NM_001100599	286075		NM_173831	ENSG00000181135	ZNF707	-	zinc finger protein 707	protein-coding
177667	chr4	121690801	121691000	+	0	NA	intron (NM_001154, intron 2 of 12)	intron (NM_001154, intron 2 of 12)	6080	NM_001154	308		NM_001154	ENSG00000164111	ANXA5	ANX5|CPB-I|ENX2|HEL-S-7|PP4|RPRGL3|VAC-alph	annexin A5	protein-coding
213201	chr7	132580501	132580980	+	0	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	-4176	NM_020911	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
135647	chr2	168336771	168337130	+	0	NA	Intergenic	Intergenic	-89355	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
217420	chr8	28385001	28387180	+	0	NA	intron (NM_018660, intron 1 of 9)	CpG	370	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
150774	chr21	43810401	43812250	+	0	NA	non-coding (NR_026961, exon 1 of 2)	non-coding (NR_026961, exon 1 of 2)	1242	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
191864	chr6	15280821	15281280	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	32195	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
28466	chr10	49309521	49310350	+	0	NA	intron (NM_001135196, intron 1 of 2)	intron (NM_001135196, intron 1 of 2)	10765	NM_001135196	118461		NM_199459	ENSG00000177354	C10orf71	CEFIP	chromosome 10 open reading frame 71	protein-coding
42864	chr11	73289301	73289900	+	0	NA	intron (NM_001277207, intron 2 of 2)	intron (NM_001277207, intron 2 of 2)	17262	NM_001277204	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
84582	chr16	30646321	30646580	+	0	NA	Intergenic	AluJo|SINE|Alu	-4328	NM_001320464	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
3263	chr1	15065771	15066330	+	0	NA	3' UTR (NM_015209, exon 8 of 8)	3' UTR (NM_015209, exon 8 of 8)	86414	NR_027136	200197		NM_182534	ENSG00000175147	TMEM51-AS1	C1orf126	TMEM51 antisense RNA 1	ncRNA
224734	chr9	21709421	21709780	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-93036	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
69475	chr14	95361551	95361730	+	0	NA	Intergenic	Intergenic	32056	NR_110127	101929080		NR_110127	ENSG00000258630	LINC02292	-	long intergenic non-protein coding RNA 2292	ncRNA
63760	chr14	21245471	21246150	+	0	NA	intron (NM_001077443, intron 1 of 7)	Tigger3b|DNA|TcMar-Tigger	23632	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
197360	chr6	73460851	73462500	+	0	NA	promoter-TSS (NM_001123226)	promoter-TSS (NM_001123226)	-62	NM_133645	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
26172	chr10	14516801	14517000	+	0	NA	Intergenic	L1MC4|LINE|L1	15814	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
226436	chr9	71638701	71639050	+	0	NA	Intergenic	Intergenic	129638	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
202930	chr6	160459871	160460030	+	0	NA	Intergenic	Intergenic	51174	NR_028092	80350		NM_024492	ENSG00000290613	LPAL2	APOA2|APOAL|APOARGC|apo(a)rg-C	lipoprotein(a) like 2 (pseudogene)	pseudo
84318	chr16	30122321	30123690	+	0	NA	intron (NM_001040056, intron 1 of 6)	CpG	215	NM_001040056	5595		NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
94535	chr17	29576471	29576630	+	0	NA	exon (NM_014030, exon 13 of 20)	exon (NM_014030, exon 13 of 20)	7849	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
195599	chr6	37581071	37581230	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-25728	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
82923	chr16	21818851	21819230	+	0	NA	intron (NM_001301064, intron 2 of 12)	L2b|LINE|L2	134	NR_003370	730092		NR_003370		RRN3P1	-	RRN3 pseudogene 1	pseudo
82892	chr16	21608721	21609300	+	0	NA	intron (NM_016025, intron 1 of 4).2	intron (NM_016025, intron 1 of 4).2	9433	NM_016025	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
179469	chr4	184469421	184469880	+	0	NA	intron (NM_002199, intron 1 of 8)	AluJr|SINE|Alu	4900	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
51515	chr12	52203151	52203450	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	7530	NR_164127	283403		NM_001242696		LINC02874	C12orf80	long intergenic non-protein coding RNA 2874	ncRNA
224633	chr9	20582371	20582730	+	0	NA	intron (NM_001286691, intron 2 of 10)	THE1A|LTR|ERVL-MaLR	39388	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
98462	chr17	47098551	47098950	+	0	NA	Intergenic	Intergenic	90545	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
176484	chr4	89889351	89889530	+	0	NA	intron (NM_001371403, intron 1 of 8)	LTR53|LTR|ERVL	-5414	NM_007351	22915		NM_007351	ENSG00000138722	MMRN1	ECM|EMILIN4|GPIa*|MMRN	multimerin 1	protein-coding
47027	chr12	388571	390230	+	0	NA	promoter-TSS (NM_001130147)	promoter-TSS (NM_001130147)	50	NM_001130147	84318		NM_032358	ENSG00000120647	CCDC77	-	coiled-coil domain containing 77	protein-coding
151576	chr21	46621801	46623200	+	0	NA	Intergenic	Intergenic	-13095	NM_001286677	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
34330	chr10	132169951	132170280	+	0	NA	3' UTR (NM_001105521, exon 24 of 25)	3' UTR (NM_001105521, exon 24 of 25)	-16833	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
17804	chr1	159821421	159822080	+	0	NA	Intergenic	Intergenic	-5123	NM_001330741	56833		NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
150673	chr21	43454121	43454580	+	0	NA	TTS (NR_152722).2	TTS (NR_152722).2	7749	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
30182	chr10	74313301	74313500	+	0	NA	intron (NM_001369123, intron 3 of 9)	HAL1ME|LINE|L1	136637	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
160886	chr3	33716771	33717400	+	0	NA	intron (NM_001375705, intron 1 of 36)	intron (NM_001375705, intron 1 of 36)	1169	NM_001365628	23122		NM_015097	ENSG00000163539	CLASP2	-	cytoplasmic linker associated protein 2	protein-coding
132382	chr2	105773571	105773730	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	28587	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
1507	chr1	2789251	2789750	+	0	NA	intron (NM_001242672, intron 2 of 7)	CpG	11368	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
103581	chr17	78700121	78700380	+	0	NA	intron (NM_017456, intron 7 of 12)	intron (NM_017456, intron 7 of 12)	16782	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
213080	chr7	131092621	131093000	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	14220	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
226897	chr9	78351901	78352100	+	0	NA	Intergenic	L1MB2|LINE|L1	54875	NM_058179	29968		NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding
43009	chr11	73981341	73981450	+	0	NA	intron (NM_001381943, intron 2 of 8)	intron (NM_001381943, intron 2 of 8)	1448	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
83877	chr16	28936151	28937380	+	0	NA	intron (NR_169755, intron 6 of 13)	CpG	4794	NR_169755	930		NM_001770	ENSG00000177455	CD19	B4|CVID3	CD19 molecule	protein-coding
99851	chr17	55433451	55433750	+	0	NA	Intergenic	Intergenic	-11765	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
192536	chr6	25129271	25129630	+	0	NA	intron (NR_027626, intron 2 of 6)	MER4-int|LTR|ERV1	8373	NR_002174	8418		NM_003570	ENSG00000293489	CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
123057	chr19	51341801	51342280	+	0	NA	promoter-TSS (NM_001163922)	promoter-TSS (NM_001163922)	84	NM_001163922	147645		NM_001163922	ENSG00000186806	VSIG10L	-	V-set and immunoglobulin domain containing 10 like	protein-coding
25780	chr10	11156551	11157280	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-7966	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
96176	chr17	39725071	39725850	+	0	NA	intron (NM_001382797, intron 21 of 25)	intron (NM_001382797, intron 21 of 25)	-1035	NR_039881	100616132		NR_039881	ENSG00000265178	MIR4728	-	microRNA 4728	ncRNA
41553	chr11	66313901	66315230	+	0	NA	TTS (NM_020404)	TTS (NM_020404)	2479	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
104248	chr17	80738101	80738500	+	0	NA	intron (NM_020761, intron 5 of 33)	intron (NM_020761, intron 5 of 33)	67332	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
173473	chr4	8964321	8964630	+	0	NA	Intergenic	CpG	-92636	NM_001306142	3166		NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
24103	chr1	235492821	235493280	+	0	NA	intron (NM_152490, intron 2 of 11)	L2a|LINE|L2	11402	NM_001277155	148789		NM_152490	ENSG00000162885	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
76279	chr15	74126771	74126930	+	0	NA	non-coding (NR_027073, exon 2 of 2)	non-coding (NR_027073, exon 2 of 2)	2428	NR_152622	283731		NR_027073	ENSG00000248540	LOC283731	-	uncharacterized LOC283731	ncRNA
99158	chr17	49364251	49364350	+	0	NA	non-coding (NR_110884, exon 2 of 3)	non-coding (NR_110884, exon 2 of 3)	-1827	NM_014897	22834		NM_014897	ENSG00000198740	ZNF652	-	zinc finger protein 652	protein-coding
139892	chr2	230709701	230710100	+	0	NA	Intergenic	AluSx|SINE|Alu	-2942	NM_016289	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
192811	chr6	26659051	26660350	+	0	NA	promoter-TSS (NM_001242797)	promoter-TSS (NM_001242797)	46	NM_024639	79692		NM_024639	ENSG00000181315	ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding
174786	chr4	48003671	48003900	+	0	NA	intron (NM_001379270, intron 2 of 10)	LTR13|LTR|ERVK	9160	NM_000087	1259		NM_000087	ENSG00000198515	CNGA1	CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49	cyclic nucleotide gated channel subunit alpha 1	protein-coding
113337	chr19	8612101	8612600	+	0	NA	Intergenic	Intergenic	-1635	NM_030957	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
9189	chr1	45605121	45606000	+	0	NA	intron (NM_152298, intron 4 of 13)	AluSx|SINE|Alu	18494	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
144993	chr20	37412501	37413250	+	0	NA	Intergenic	Intergenic	66735	NM_198291	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
214659	chr7	150896901	150897100	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	44483	NM_001091	26		NM_001091	ENSG00000002726	AOC1	ABP|ABP1|DAO|DAO1|KAO|KDAO	amine oxidase copper containing 1	protein-coding
54855	chr12	95477751	95477850	+	0	NA	intron (NM_001317183, intron 2 of 9)	intron (NM_001317183, intron 2 of 9)	3648	NM_001317183	10988		NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
101961	chr17	74671021	74671630	+	0	NA	5' UTR (NM_175738, exon 1 of 9)	5' UTR (NM_175738, exon 1 of 9)	194	NM_175738	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
73457	chr15	43481851	43482150	+	0	NA	intron (NM_001355001, intron 4 of 28)	AluY|SINE|Alu	11156	NM_001141980	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
31685	chr10	97494951	97495780	+	0	NA	intron (NM_001330128, intron 1 of 28)	intron (NM_001330128, intron 1 of 28)	3057	NM_022362	64210		NM_022362	ENSG00000155229	MMS19	CIAO4|MET18|MMS19L|hMMS19	MMS19 homolog, cytosolic iron-sulfur assembly component	protein-coding
146440	chr20	49669501	49670700	+	0	NA	intron (NM_004776, intron 1 of 8)	MER41A|LTR|ERV1	43778	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
167064	chr3	126985571	126985830	+	0	NA	Intergenic	Intergenic	-2894	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
124567	chr2	655671	656030	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	20854	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
238446	chrX	151680951	151681050	+	0	NA	Intergenic	Intergenic	-13607	NM_001372165	79057		NM_024082	ENSG00000130032	PRRG3	PRGP3|TMG3	proline rich and Gla domain 3	protein-coding
105624	chr18	804501	804700	+	0	NA	intron (NM_005433, intron 1 of 11)	AluSx|SINE|Alu	7642	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
99396	chr17	49992221	49992600	+	0	NA	intron (NM_005220, intron 2 of 2)	intron (NM_005220, intron 2 of 2)	2814	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
160507	chr3	30633071	30633230	+	0	NA	intron (NM_001024847, intron 2 of 7)	MIRb|SINE|MIR	26549	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
214909	chr7	151453251	151453950	+	0	NA	Intergenic	Intergenic	-12787	NR_131779	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
43663	chr11	85745571	85746480	+	0	NA	intron (NM_032943, intron 3 of 18)	intron (NM_032943, intron 3 of 18)	12044	NM_001162951	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
181776	chr5	50746021	50746750	+	0	NA	intron (NM_024615, intron 2 of 25)	L1MD2|LINE|L1	78971	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
44813	chr11	113870421	113871080	+	0	NA	intron (NM_020886, intron 1 of 24)	intron (NM_020886, intron 1 of 24)	4822	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
234028	chrX	3747901	3748300	+	0	NA	Intergenic	Intergenic	-34451	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
156441	chr22	41239251	41239350	+	0	NA	intron (NM_138481, intron 2 of 5)	MIRc|SINE|MIR	1631	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
78645	chr15	94270651	94270850	+	0	NA	intron (NR_169532, intron 1 of 23)	L2a|LINE|L2	39189	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
66742	chr14	64508951	64509300	+	0	NA	intron (NM_001123329, intron 1 of 1)	AluJb|SINE|Alu	-3912	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
131554	chr2	96770321	96770580	+	0	NA	intron (NM_020184, intron 1 of 6)	intron (NM_020184, intron 1 of 6)	9548	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
122263	chr19	49053551	49054530	+	0	NA	TTS (NM_001385261)	TTS (NM_001385261)	3709	NM_033142	94027		NM_033142	ENSG00000196337	CGB7	CG-beta-a|CGB6	chorionic gonadotropin subunit beta 7	protein-coding
1805	chr1	6204271	6204430	+	0	NA	TTS (NR_125997)	TTS (NR_125997)	1430	NR_125997	102724450		NR_125997	ENSG00000226944	RNF207-AS1	-	RNF207 antisense RNA 1	ncRNA
208553	chr7	70787951	70788630	+	0	NA	intron (NM_015570, intron 18 of 18)	intron (NM_015570, intron 18 of 18)	-343854	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
50414	chr12	47367851	47368430	+	0	NA	Intergenic	L2a|LINE|L2	-3871	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
6342	chr1	27723971	27724480	+	0	NA	Intergenic	AluJb|SINE|Alu	-1736	NM_001143914	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
175452	chr4	71275171	71275330	+	0	NA	intron (NM_001134742, intron 3 of 24)	intron (NM_001134742, intron 3 of 24)	-63770	NM_003759	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
124710	chr2	3595951	3596250	+	0	NA	intron (NM_024027, intron 1 of 6)	intron (NM_024027, intron 1 of 6)	988	NM_024027	78989		NM_024027	ENSG00000118004	COLEC11	3MC2|CL-11|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
232212	chr9	134364501	134365150	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-14470	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
116547	chr19	18214101	18214300	+	0	NA	intron (NM_001330172, intron 13 of 15)	AluY|SINE|Alu	9470	NR_134910	102725254		NR_134910	ENSG00000268650	LOC102725254	-	uncharacterized LOC102725254	ncRNA
232983	chr9	136981201	136982030	+	0	NA	3' UTR (NM_000954, exon 7 of 7)	3' UTR (NM_000954, exon 7 of 7)	-1378	NM_207510	401562		NM_207510	ENSG00000214402	LCNL1	-	lipocalin like 1	protein-coding
158692	chr3	5200021	5200600	+	0	NA	intron (NM_014674, intron 3 of 11)	intron (NM_014674, intron 3 of 11)	12603	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
118612	chr19	36796871	36798250	+	0	NA	promoter-TSS (NR_040027)	promoter-TSS (NR_040027)	-3	NR_040028	284408		NR_040027	ENSG00000267254	ZNF790-AS1	-	ZNF790 antisense RNA 1	ncRNA
178285	chr4	145061321	145061680	+	0	NA	intron (NM_001256711, intron 5 of 6)	intron (NM_001256711, intron 5 of 6)	35882	NM_001318367	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
8657	chr1	41810371	41810850	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	108312	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
101855	chr17	74204671	74204830	+	0	NA	intron (NM_000999, intron 3 of 4)	AluSx|SINE|Alu	1072	NM_001035258	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
180574	chr5	14744771	14745130	+	0	NA	intron (NM_054027, intron 7 of 11)	intron (NM_054027, intron 7 of 11)	32256	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
59531	chr13	27250801	27252180	+	0	NA	promoter-TSS (NM_000982).2	promoter-TSS (NM_000982).2	-65	NM_000982	6144		NM_000982	ENSG00000122026	RPL21	HYPT12|L21|eL21	ribosomal protein L21	protein-coding
2418	chr1	9591471	9591830	+	0	NA	intron (NM_001130924, intron 1 of 10)	intron (NM_001130924, intron 1 of 10)	2739	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
29392	chr10	70134151	70134450	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1366	NM_001198696	84883		NM_032797	ENSG00000042286	AIFM2	AMID|FSP1|PRG3	apoptosis inducing factor mitochondria associated 2	protein-coding
115258	chr19	14534801	14535230	+	0	NA	intron (NM_138501, intron 1 of 12)	intron (NM_138501, intron 1 of 12)	5421	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
68729	chr14	90827851	90829500	+	0	NA	Intergenic	Intergenic	-12245	NM_001010854	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
15206	chr1	149321321	149321780	+	0	NA	Intergenic	CpG	-16733	NR_158171	100996716		NR_158171		SEC22B2P	CH17-189H20.1|SEC22B2	SEC22 homolog B2, pseudogene	pseudo
130756	chr2	86814421	86814880	+	0	NA	TTS (NM_001178100)	TTS (NM_001178100)	-6254	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
47199	chr12	816171	817500	+	0	NA	intron (NM_018979, intron 2 of 27)	intron (NM_018979, intron 2 of 27)	63912	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
114002	chr19	10857971	10858680	+	0	NA	exon (NM_001136482, exon 4 of 7)	exon (NM_001136482, exon 4 of 7)	9910	NM_001136482	255809		NM_001136482	ENSG00000214212	C19orf38	HIDE1	chromosome 19 open reading frame 38	protein-coding
102914	chr17	76567471	76568200	+	0	NA	intron (NM_006456, intron 7 of 8)	intron (NM_006456, intron 7 of 8)	6202	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
10840	chr1	77953971	77954130	+	0	NA	intron (NR_146539, intron 18 of 22)	FLAM_A|SINE|Alu	25022	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
171215	chr3	195760521	195760800	+	0	NA	intron (NM_018406, intron 16 of 24)	intron (NM_018406, intron 16 of 24)	39682	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
111682	chr19	4264701	4265600	+	0	NA	intron (NM_018074, intron 6 of 7)	Tigger13a|DNA|TcMar-Tigger	-13919	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
39566	chr11	61131721	61132700	+	0	NA	exon (NM_017966, exon 5 of 5)	exon (NM_017966, exon 5 of 5)	29216	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
73935	chr15	51162901	51163130	+	0	NA	intron (NR_146310, intron 1 of 2)	intron (NR_146310, intron 1 of 2)	-57739	NM_207381	388121		NM_207381	ENSG00000183578	TNFAIP8L3	TIPE3	TNF alpha induced protein 8 like 3	protein-coding
66308	chr14	61407671	61408400	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	86592	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
105723	chr18	2714071	2714850	+	0	NA	intron (NM_015295, intron 17 of 47)	L1M2|LINE|L1	58734	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
18223	chr1	161022721	161022980	+	0	NA	Intergenic	AluSp|SINE|Alu	-1698	NM_001382730	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
47397	chr12	2813601	2814450	+	0	NA	intron (NR_147202, intron 1 of 15)	AluJr|SINE|Alu	-1101	NR_146318	283440		NR_033958	ENSG00000258325	ITFG2-AS1	-	ITFG2 antisense RNA 1	ncRNA
112157	chr19	5629851	5629950	+	0	NA	intron (NM_001320571, intron 2 of 18)	AluSx1|SINE|Alu	6817	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
48456	chr12	9747351	9747880	+	0	NA	Intergenic	AluJb|SINE|Alu	13286	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
36239	chr11	3735851	3736150	+	0	NA	intron (NM_001365129, intron 11 of 31)	AluSx3|SINE|Alu	61546	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
139725	chr2	229714371	229715630	+	0	NA	promoter-TSS (NM_139072)	promoter-TSS (NM_139072)	-445	NM_139072	92737		NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch like EGF repeat containing	protein-coding
198061	chr6	90217871	90219260	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	78278	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
20741	chr1	200970901	200971250	+	0	NA	3' UTR (NM_001252103, exon 34 of 34)	3' UTR (NM_001252103, exon 34 of 34)	42131	NR_147176	647215		NR_147176	ENSG00000293444	MROH3P	C1orf81	maestro heat like repeat family member 3, pseudogene	pseudo
24078	chr1	235322351	235322450	+	0	NA	intron (NM_016374, intron 2 of 23)	L2c|LINE|L2	-4816	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
206075	chr7	27176301	27176500	+	0	NA	intron (NR_037939, intron 1 of 1)	intron (NR_037939, intron 1 of 1)	-2080	NM_018951	3206		NM_018951	ENSG00000253293	HOXA10	HOX1|HOX1.8|HOX1H|PL	homeobox A10	protein-coding
23334	chr1	228105521	228105900	+	0	NA	TTS (NM_181464)	TTS (NM_181464)	-2385	NM_024319	79169		NM_024319	ENSG00000143793	C1orf35	MMTAG2	chromosome 1 open reading frame 35	protein-coding
22854	chr1	225466571	225468630	+	0	NA	Intergenic	Intergenic	-38745	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
217952	chr8	38181621	38182100	+	0	NA	intron (NM_001204878, intron 1 of 3)	AluSg7|SINE|Alu	5005	NM_004874	9530		NM_004874	ENSG00000156735	BAG4	BAG-4|SODD	BAG cochaperone 4	protein-coding
133015	chr2	111706571	111706730	+	0	NA	Intergenic	Intergenic	64484	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
36988	chr11	11866251	11866550	+	0	NA	intron (NM_001372101, intron 1 of 26)	intron (NM_001372101, intron 1 of 26)	24428	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
92163	chr17	7703371	7703950	+	0	NA	TTS (NM_018081)	TTS (NM_018081)	-1542	NM_001406	1949		NM_001406	ENSG00000108947	EFNB3	EFL6|EPLG8|LERK8	ephrin B3	protein-coding
13961	chr1	120394371	120394930	+	0	NA	Intergenic	MIR3|SINE|MIR	-20377	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
122686	chr19	49888051	49888700	+	0	NA	TTS (NR_039905)	TTS (NR_039905)	200	NR_039905	100616314		NR_039905	ENSG00000284394	MIR4750	mir-4750	microRNA 4750	ncRNA
151549	chr21	46543471	46543630	+	0	NA	intron (NM_206891, intron 18 of 19)	intron (NM_206891, intron 18 of 19)	61532	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
74370	chr15	58760571	58761200	+	0	NA	Intergenic	Intergenic	10089	NR_135474	101928725		NR_135474	ENSG00000245975	MINDY2-DT	-	MINDY2 divergent transcript	ncRNA
220703	chr8	101730971	101731330	+	0	NA	intron (NM_001040625, intron 4 of 6)	L2a|LINE|L2	59819	NM_032041	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
197113	chr6	57220201	57220600	+	0	NA	intron (NR_103822, intron 1 of 3)	L1ME1|LINE|L1	1061	NM_183227	51715		NM_016277	ENSG00000112210	RAB23	HSPC137	RAB23, member RAS oncogene family	protein-coding
222180	chr8	133016451	133017650	+	0	NA	intron (NM_003235, intron 37 of 47)	intron (NM_003235, intron 37 of 47)	29531	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
85557	chr16	53437601	53438000	+	0	NA	intron (NM_001323611, intron 1 of 21)	AluY|SINE|Alu	2181	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
217602	chr8	29695971	29696130	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	52059	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
53264	chr12	63667221	63667480	+	0	NA	intron (NM_173812, intron 1 of 21)	intron (NM_173812, intron 1 of 21)	1143	NM_173812	283417		NM_173812	ENSG00000177990	DPY19L2	SPATA34|SPGF9	dpy-19 like 2	protein-coding
118966	chr19	38854001	38854730	+	0	NA	Intergenic	AluJo|SINE|Alu	-2018	NM_001005335	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
52970	chr12	57473971	57474130	+	0	NA	exon (NM_032496, exon 16 of 18)	exon (NM_032496, exon 16 of 18)	3817	NM_001319851	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
210901	chr7	101180951	101181400	+	0	NA	promoter-TSS (NM_198571)	promoter-TSS (NM_198571)	-882	NM_198571	375607		NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding
79297	chr16	544301	545300	+	0	NA	intron (NM_005632, intron 3 of 13)	intron (NM_005632, intron 3 of 13)	1523	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
220954	chr8	109539271	109540830	+	0	NA	promoter-TSS (NM_001278938)	promoter-TSS (NM_001278938)	-123	NM_004215	9166		NM_004215	ENSG00000147654	EBAG9	EB9|PDAF	estrogen receptor binding site associated antigen 9	protein-coding
69093	chr14	92123551	92123650	+	0	NA	intron (NM_001322272, intron 1 of 15)	AluSz|SINE|Alu	1631	NM_017437	53981		NM_017437	ENSG00000165934	CPSF2	CPSF100	cleavage and polyadenylation specific factor 2	protein-coding
117059	chr19	18999101	18999830	+	0	NA	intron (NR_147914, intron 8 of 11)	MIRb|SINE|MIR	34052	NR_147914	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
183796	chr5	82174771	82175100	+	0	NA	intron (NM_031482, intron 4 of 7)	intron (NM_031482, intron 4 of 7)	103419	NM_001025	6228		NM_001025	ENSG00000186468	RPS23	BTDD|MABAS|MCINS|PAMAS|S23|uS12	ribosomal protein S23	protein-coding
127339	chr2	39111021	39111880	+	0	NA	intron (NM_001382394, intron 1 of 22)	intron (NM_001382394, intron 1 of 22)	9601	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
28280	chr10	46022771	46023850	+	0	NA	intron (NM_001145263, intron 1 of 9)	CpG	148	NM_005437	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
166191	chr3	111712201	111713030	+	0	NA	intron (NM_153268, intron 2 of 3)	intron (NM_153268, intron 2 of 3)	-19881	NM_001134437	90102		NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding
20978	chr1	202624621	202624880	+	0	NA	intron (NM_177402, intron 1 of 8)	(GT)n|Simple_repeat|Simple_repeat	18703	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
209428	chr7	76364051	76364150	+	0	NA	Intergenic	Intergenic	-5109	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
3992	chr1	18915071	18915930	+	0	NA	intron (NM_001136265, intron 5 of 8)	intron (NM_001136265, intron 5 of 8)	-12701	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
194815	chr6	34257451	34258080	+	0	NA	Intergenic	AluYk3|SINE|Alu	-8657	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
57986	chr12	124109951	124110050	+	0	NA	intron (NM_001347902, intron 2 of 4)	MLT1J|LTR|ERVL-MaLR	136785	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
192084	chr6	16672221	16673450	+	0	NA	intron (NM_000332, intron 3 of 8)	AluSx1|SINE|Alu	87349	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
141826	chr20	380321	381300	+	0	NA	promoter-TSS (NM_001301196)	promoter-TSS (NM_001301196)	181	NM_021158	57761		NM_021158	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding
137628	chr2	197343151	197343600	+	0	NA	Intergenic	AluJb|SINE|Alu	-32595	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
75193	chr15	64783151	64783250	+	0	NA	Intergenic	Intergenic	-7611	NM_194272	348093		NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
21563	chr1	206384401	206384800	+	0	NA	intron (NM_001377446, intron 5 of 21)	intron (NM_001377446, intron 5 of 21)	-85876	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
220604	chr8	100915701	100916580	+	0	NA	TTS (NM_001135701)	TTS (NM_001135701)	34431	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
210651	chr7	100477101	100477600	+	0	NA	non-coding (NR_130119, exon 2 of 5)	non-coding (NR_130119, exon 2 of 5)	1864	NM_030935	81628		NM_030935	ENSG00000166925	TSC22D4	SPACDR|THG-1|THG1|TILZ2	TSC22 domain family member 4	protein-coding
129975	chr2	73995621	73996180	+	0	NA	intron (NM_001287491, intron 2 of 11)	intron (NM_001287491, intron 2 of 11)	-6792	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
7267	chr1	32366101	32367230	+	0	NA	3' UTR (NM_001300958, exon 10 of 10)	3' UTR (NM_001300958, exon 10 of 10)	4126	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
153568	chr22	26660051	26660350	+	0	NA	intron (NR_033319, intron 1 of 3)	AluSx|SINE|Alu	2718	NR_033319	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
105170	chr17	82268901	82269100	+	0	NA	intron (NM_139062, intron 1 of 9)	AluSz|SINE|Alu	4700	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
146054	chr20	47380601	47381100	+	0	NA	Intergenic	Intergenic	-23961	NM_001281769	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
89633	chr16	89325921	89326700	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	5858	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
116792	chr19	18519921	18520960	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	1630	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
156712	chr22	41779751	41780250	+	0	NA	intron (NM_152513, intron 22 of 30)	intron (NM_152513, intron 22 of 30)	-20679	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
103306	chr17	77880651	77882000	+	0	NA	non-coding (NR_028337, exon 2 of 2)	non-coding (NR_028337, exon 2 of 2)	2762	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
205676	chr7	23020801	23021330	+	0	NA	Intergenic	Intergenic	-6935	NM_001363467	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
172610	chr4	2507321	2507580	+	0	NA	intron (NM_001185009, intron 5 of 8)	intron (NM_001185009, intron 5 of 8)	-27925	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
210378	chr7	99631621	99631900	+	0	NA	3' UTR (NM_001350979, exon 6 of 6)	3' UTR (NM_001350979, exon 6 of 6)	14814	NM_001350984	221785		NM_145115	ENSG00000197037	ZSCAN25	ZNF498	zinc finger and SCAN domain containing 25	protein-coding
33975	chr10	124656071	124656230	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-47878	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
154058	chr22	30602051	30602350	+	0	NA	intron (NM_001282327, intron 2 of 16)	THE1D|LTR|ERVL-MaLR	4813	NM_001282328	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
228889	chr9	112741121	112741580	+	0	NA	Intergenic	L1MC3|LINE|L1	-9410	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
226391	chr9	70400051	70400830	+	0	NA	intron (NM_001206, intron 1 of 1)	MamGypLTR2c|LTR|Gypsy	14217	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
118998	chr19	38890501	38890700	+	0	NA	intron (NR_034146, intron 2 of 13)	AluSx|SINE|Alu	3555	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
158918	chr3	10015751	10016330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4792	NM_018447	55831		NM_018447	ENSG00000125037	EMC3	POB|TMEM111	ER membrane protein complex subunit 3	protein-coding
127033	chr2	37153021	37153880	+	0	NA	intron (NM_002759, intron 1 of 16)	AluJr|SINE|Alu	3530	NM_001135651	5610		NM_002759	ENSG00000055332	EIF2AK2	DYT33|EIF2AK1|LEUDEN|PKR|PPP1R83|PRKR	eukaryotic translation initiation factor 2 alpha kinase 2	protein-coding
15881	chr1	151505201	151505800	+	0	NA	Intergenic	Intergenic	-5887	NM_020770	57530		NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
188647	chr5	157234821	157235080	+	0	NA	intron (NM_005546, intron 8 of 16)	intron (NM_005546, intron 8 of 16)	-31173	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
11889	chr1	93172701	93173130	+	0	NA	intron (NR_030761, intron 1 of 4)	L1MA7|LINE|L1	7498	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
94114	chr17	28043001	28043980	+	0	NA	intron (NM_016231, intron 1 of 10)	intron (NM_016231, intron 1 of 10)	813	NM_016231	51701		NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding
155202	chr22	37827921	37828180	+	0	NA	Intergenic	AluSx3|SINE|Alu	4668	NM_003614	8484		NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
117353	chr19	19543321	19543580	+	0	NA	intron (NM_153221, intron 7 of 7)	intron (NM_153221, intron 7 of 7)	5185	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
186512	chr5	138346551	138347330	+	0	NA	exon (NM_001350195, exon 5 of 5)	exon (NM_001350195, exon 5 of 5)	-5745	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
60171	chr13	40189301	40189980	+	0	NA	TTS (NR_046870)	TTS (NR_046870)	7831	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
93205	chr17	17820851	17821400	+	0	NA	intron (NM_004176, intron 1 of 18)	intron (NM_004176, intron 1 of 18)	2505	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
171493	chr3	196596371	196596530	+	0	NA	Intergenic	Intergenic	-27776	NM_001345913	348793		NM_182627	ENSG00000185798	WDR53	-	WD repeat domain 53	protein-coding
183768	chr5	81746721	81747850	+	0	NA	intron (NM_001256733, intron 1 of 15)	MIRb|SINE|MIR	3968	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
40588	chr11	64415801	64416430	+	0	NA	Intergenic	Intergenic	-32942	NR_073177	100996455		NR_073177	ENSG00000181908	LINC02724	-	long intergenic non-protein coding RNA 2724	ncRNA
162234	chr3	47149351	47149680	+	0	NA	intron (NR_146158, intron 1 of 21)	intron (NR_146158, intron 1 of 21)	14598	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
134936	chr2	151423521	151424400	+	0	NA	intron (NM_018151, intron 8 of 35)	L1MB4|LINE|L1	14058	NM_001177665	55183		NM_018151	ENSG00000080345	RIF1	-	replication timing regulatory factor 1	protein-coding
192317	chr6	21851401	21851800	+	0	NA	intron (NR_015410, intron 4 of 11)	SVA_E|Retroposon|SVA	185187	NR_015410	401237		NR_015410		CASC15	CANT|LINC00340|lnc-SOX4-1	cancer susceptibility 15	ncRNA
177305	chr4	109646451	109646550	+	0	NA	intron (NM_017918, intron 1 of 7)	L2b|LINE|L2	56945	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
15188	chr1	149165801	149166100	+	0	NA	Intergenic	AluJo|SINE|Alu	35196	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
151988	chr22	19170401	19170630	+	0	NA	Intergenic	Intergenic	-1191	NR_103767	100652736		NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
221819	chr8	128030721	128031380	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	-18102	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
32294	chr10	102135171	102135480	+	0	NA	intron (NM_015062, intron 1 of 13)	intron (NM_015062, intron 1 of 13)	2285	NM_015062	23082		NM_015062	ENSG00000148840	PPRC1	PRC	PPARG related coactivator 1	protein-coding
40312	chr11	63888121	63890200	+	0	NA	intron (NM_017490, intron 1 of 17)	intron (NM_017490, intron 1 of 17)	623	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
29022	chr10	63632751	63633230	+	0	NA	Intergenic	AluSc|SINE|Alu	-111100	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
76759	chr15	76951201	76951430	+	0	NA	3' UTR (NM_001271837, exon 8 of 8)	3' UTR (NM_001271837, exon 8 of 8)	19566	NM_001271837	5955		NM_002902	ENSG00000117906	RCN2	E6BP|ERC-55|ERC55|TCBP49	reticulocalbin 2	protein-coding
113831	chr19	10618521	10618780	+	0	NA	intron (NM_001145056, intron 1 of 21)	AluY|SINE|Alu	-6903	NM_001363611	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
23653	chr1	230976871	230978200	+	0	NA	intron (NM_024525, intron 1 of 22)	intron (NM_024525, intron 1 of 22)	1326	NM_001376509	79573		NM_024525	ENSG00000143643	TTC13	-	tetratricopeptide repeat domain 13	protein-coding
174264	chr4	38128701	38129780	+	0	NA	intron (NM_015173, intron 18 of 19)	intron (NM_015173, intron 18 of 19)	9286	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
60878	chr13	46120951	46121250	+	0	NA	Intergenic	Intergenic	-16024	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
197736	chr6	87157101	87157700	+	0	NA	intron (NM_015021, intron 1 of 7)	intron (NM_015021, intron 1 of 7)	1835	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
16057	chr1	153244321	153244580	+	0	NA	Intergenic	Intergenic	-15237	NM_000427	4014		NM_000427	ENSG00000203782	LORICRIN	LOR	loricrin cornified envelope precursor protein	protein-coding
153596	chr22	27607851	27607970	+	0	NA	Intergenic	Intergenic	193846	NM_002430	4330		NM_002430	ENSG00000169184	MN1	CEBALID|MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	MN1 proto-oncogene, transcriptional regulator	protein-coding
113516	chr19	10109921	10110580	+	0	NA	TTS (NR_003688)	TTS (NR_003688)	501	NR_003688	100113382		NR_003688	ENSG00000238531	SNORD105B	-	small nucleolar RNA, C/D box 105B	snoRNA
18706	chr1	167443271	167443430	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	75179	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
15723	chr1	151047151	151048000	+	0	NA	promoter-TSS (NM_017860)	promoter-TSS (NM_017860)	-176	NM_017860	54964		NM_017860	ENSG00000143443	C1orf56	MENT	chromosome 1 open reading frame 56	protein-coding
169890	chr3	177551351	177551950	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	109729	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
89354	chr16	88767371	88768350	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	17360	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
88577	chr16	85565451	85566100	+	0	NA	Intergenic	Intergenic	-45634	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
175920	chr4	80204651	80205150	+	0	NA	TTS (NM_001099403)	TTS (NM_001099403)	7397	NM_001099403	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
65229	chr14	49854851	49855480	+	0	NA	Intergenic	AluJo|SINE|Alu	-1251	NR_145670	378707		NR_145670	ENSG00000278771	RN7SL3	7L30.2|RN7SL631P|RNSRP3	RNA component of signal recognition particle 7SL3	scRNA
61221	chr13	49583321	49583580	+	0	NA	intron (NM_001352504, intron 1 of 11)	intron (NM_001352504, intron 1 of 11)	2108	NM_001352500	55213		NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RDEOA	RCC1 and BTB domain containing protein 1	protein-coding
181749	chr5	50712351	50712930	+	0	NA	intron (NM_024615, intron 2 of 25)	L2c|LINE|L2	45226	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
162380	chr3	48055351	48055650	+	0	NA	intron (NM_001384729, intron 1 of 20)	SVA_F|Retroposon|SVA	33348	NM_001384861	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
51134	chr12	50113601	50113800	+	0	NA	intron (NM_001257134, intron 1 of 1)	AluSx|SINE|Alu	1464	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
108477	chr18	70662971	70663850	+	0	NA	Intergenic	Intergenic	-12456	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
238479	chrX	153412371	153412530	+	0	NA	Intergenic	L2a|LINE|L2	-5873	NM_001136273	139735		NM_001136273	ENSG00000189420	ZFP92	ZNF897	ZFP92 zinc finger protein	protein-coding
45476	chr11	118594201	118594400	+	0	NA	intron (NM_001142281, intron 7 of 8)	AluJb|SINE|Alu	-12136	NM_015157	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
167408	chr3	128998921	128999680	+	0	NA	intron (NM_001348521, intron 1 of 15)	intron (NM_001348521, intron 1 of 15)	-2004	NM_024768	79825		NM_024768	ENSG00000114654	EFCC1	C3orf73|CCDC48	EF-hand and coiled-coil domain containing 1	protein-coding
44449	chr11	104907811	104908350	+	0	NA	intron (NR_034078, intron 2 of 4)	intron (NR_034078, intron 2 of 4)	-9410	NR_034068	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
99026	chr17	48854171	48854700	+	0	NA	intron (NM_001261391, intron 10 of 13)	AluSx1|SINE|Alu	23400	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
145082	chr20	38665321	38665580	+	0	NA	Intergenic	Intergenic	-59036	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
62954	chr13	112280601	112281030	+	0	NA	Intergenic	Intergenic	-7815	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
77551	chr15	84759471	84759830	+	0	NA	intron (NM_014630, intron 1 of 10)	MamTip2|DNA|hAT-Tip100	11058	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
48305	chr12	8993921	8994650	+	0	NA	intron (NR_137426, intron 2 of 3)	AluSz6|SINE|Alu	4660	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
218148	chr8	41827921	41829090	+	0	NA	intron (NM_001142446, intron 1 of 42)	CpG	-30883	NM_020477	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
160495	chr3	30622351	30622450	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	15799	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
233163	chr9	137178601	137179000	+	0	NA	intron (NM_013366, intron 10 of 12)	intron (NM_013366, intron 10 of 12)	-6744	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
187149	chr5	140550771	140551330	+	0	NA	intron (NM_001035235, intron 4 of 4)	intron (NM_001035235, intron 4 of 4)	3388	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
76601	chr15	75361821	75362280	+	0	NA	intron (NM_001256494, intron 8 of 25)	intron (NM_001256494, intron 8 of 25)	6557	NM_006715	4123		NM_006715	ENSG00000140400	MAN2C1	CDDG2|MAN6A8|MANA|MANA1	mannosidase alpha class 2C member 1	protein-coding
155028	chr22	37468601	37468800	+	0	NA	TTS (NM_002405)	TTS (NM_002405)	17684	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
186759	chr5	139325151	139325750	+	0	NA	exon (NM_018834, exon 13 of 15)	exon (NM_018834, exon 13 of 15)	-16382	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
140177	chr2	231659021	231659330	+	0	NA	Intergenic	Intergenic	-49350	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
33099	chr10	110924301	110924500	+	0	NA	intron (NR_136749, intron 1 of 7)	L2c|LINE|L2	4796	NM_007373	8036		NM_007373	ENSG00000108061	SHOC2	NSLH1|SIAA0862|SOC2|SUR8	SHOC2 leucine rich repeat scaffold protein	protein-coding
51635	chr12	53002971	53003400	+	0	NA	Intergenic	AluJb|SINE|Alu	-3271	NM_001300821	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
163913	chr3	52538971	52539780	+	0	NA	intron (NM_001124767, intron 1 of 1)	intron (NM_001124767, intron 1 of 1)	2770	NM_001124767	440957		NM_001124767	ENSG00000168273	UQCC5	C3orf78|SMIM4	ubiquinol-cytochrome c reductase complex assembly factor 5	protein-coding
187092	chr5	140267001	140267600	+	0	NA	intron (NM_002622, intron 3 of 3)	intron (NM_002622, intron 3 of 3)	35801	NM_002622	5201		NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
196218	chr6	42782701	42784010	+	0	NA	promoter-TSS (NR_134654)	promoter-TSS (NR_134654)	-141	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
61420	chr13	51816171	51816330	+	0	NA	3' UTR (NM_001351005, exon 4 of 4)	3' UTR (NM_001351005, exon 4 of 4)	-12087	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
100933	chr17	64476651	64476750	+	0	NA	Intergenic	Intergenic	20354	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
52603	chr12	56224071	56225280	+	0	NA	intron (NM_024068, intron 1 of 6)	intron (NM_024068, intron 1 of 6)	333	NM_024068	79035		NM_024068	ENSG00000139579	NABP2	OBFC2B|SOSS-B1|SSB1|hSSB1	nucleic acid binding protein 2	protein-coding
217856	chr8	37799571	37799880	+	0	NA	intron (NM_032777, intron 1 of 18)	intron (NM_032777, intron 1 of 18)	2842	NM_032777	25960		NM_032777	ENSG00000020181	ADGRA2	GPR124|TEM5	adhesion G protein-coupled receptor A2	protein-coding
171201	chr3	195705421	195705680	+	0	NA	intron (NR_122105, intron 2 of 4)	intron (NR_122105, intron 2 of 4)	6149	NR_030296	693155		NR_030296	ENSG00000207650	MIR570	MIRN570|hsa-mir-570	microRNA 570	ncRNA
163282	chr3	50317851	50318450	+	0	NA	exon (NM_033158, exon 5 of 5)	exon (NM_033158, exon 5 of 5)	4595	NM_003773	8692		NM_003773	ENSG00000068001	HYAL2	LUCA2	hyaluronidase 2	protein-coding
219448	chr8	73008401	73009630	+	0	NA	exon (NM_017489, exon 1 of 10)	exon (NM_017489, exon 1 of 10)	151	NM_017489	7013		NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding
182047	chr5	55905671	55906430	+	0	NA	intron (NM_001297572, intron 8 of 10)	intron (NM_001297572, intron 8 of 10)	52728	NM_001242639	133396		NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R|zcytoR17	interleukin 31 receptor A	protein-coding
180225	chr5	1535671	1535900	+	0	NA	Intergenic	L1ME1|LINE|L1	-11825	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
27887	chr10	41874971	41875930	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	492595	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
152176	chr22	20090801	20091050	+	0	NA	intron (NM_022720, intron 5 of 13)	intron (NM_022720, intron 5 of 13)	4867	NR_031706	100302197		NR_031706	ENSG00000284464	MIR1306	MIRN1306|hsa-mir-1306|mir-1306	microRNA 1306	ncRNA
141922	chr20	1144571	1144730	+	0	NA	intron (NM_178578, intron 5 of 7)	L1MD1|LINE|L1	26048	NM_001323410	9491		NM_006814	ENSG00000125818	PSMF1	PI31	proteasome inhibitor subunit 1	protein-coding
94774	chr17	30921951	30922050	+	0	NA	promoter-TSS (NM_018404)	promoter-TSS (NM_018404)	55	NM_018404	55803		NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
174950	chr4	49145671	49146550	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	159468	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
231421	chr9	131181321	131181600	+	0	NA	intron (NM_001318324, intron 24 of 35)	L1M4|LINE|L1	-8679	NM_001318325	8021		NM_005085	ENSG00000126883	NUP214	CAIN|CAN|IIAE9	nucleoporin 214	protein-coding
194307	chr6	32814871	32815030	+	0	NA	intron (NM_002120, intron 2 of 5)	intron (NM_002120, intron 2 of 5)	2052	NM_002120	3112		NM_002120	ENSG00000241106	HLA-DOB	DOB|HLA_DOB	major histocompatibility complex, class II, DO beta	protein-coding
170398	chr3	185253851	185254430	+	0	NA	promoter-TSS (NR_106712)	promoter-TSS (NR_106712)	-91	NM_001166415	1962		NM_001966	ENSG00000113790	EHHADH	ECHD|FRTS3|L-PBE|LBFP|LBP|MFE1|PBFE	enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase	protein-coding
39581	chr11	61164071	61164530	+	0	NA	Intergenic	Intergenic	-2874	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
178010	chr4	139312271	139312630	+	0	NA	intron (NM_057175, intron 1 of 19)	intron (NM_057175, intron 1 of 19)	-9899	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
60711	chr13	44116771	44117570	+	0	NA	intron (NR_104065, intron 1 of 4)	intron (NR_104065, intron 1 of 4)	6621	NR_104065	101929212		NR_104064	ENSG00000227258	SMIM2-AS1	C13orf44-AS1|C3orf81-AS1	SMIM2 antisense RNA 1	ncRNA
94615	chr17	29809001	29809400	+	0	NA	intron (NM_033389, intron 1 of 14)	AluSz6|SINE|Alu	-47768	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
93865	chr17	21027951	21028450	+	0	NA	intron (NM_015276, intron 2 of 12)	intron (NM_015276, intron 2 of 12)	14811	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
211473	chr7	105105771	105106130	+	0	NA	exon (NM_018682, exon 18 of 26)	exon (NM_018682, exon 18 of 26)	91745	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
109177	chr19	342771	343180	+	0	NA	intron (NM_017550, intron 1 of 13)	intron (NM_017550, intron 1 of 13)	1866	NM_001346105	54531		NM_017550	ENSG00000105556	MIER2	KIAA1193|Mi-er2	MIER family member 2	protein-coding
239179	chrY	12537151	12537780	+	0	NA	Intergenic	CpG	-115875	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
113385	chr19	9136301	9137130	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-3682	NM_020933	57693		NM_020933	ENSG00000130803	ZNF317	-	zinc finger protein 317	protein-coding
148347	chr20	63831801	63832680	+	0	NA	promoter-TSS (NM_001369741)	promoter-TSS (NM_001369741)	-976	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
171080	chr3	195480371	195480830	+	0	NA	Intergenic	L1MC1|LINE|L1	-37580	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
118862	chr19	38652151	38652530	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	4691	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
191136	chr6	4132821	4133080	+	0	NA	intron (NM_206836, intron 2 of 9)	AluSz|SINE|Alu	2518	NM_001166010	10455		NM_006117	ENSG00000198721	ECI2	ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3	enoyl-CoA delta isomerase 2	protein-coding
7531	chr1	34863251	34864050	+	0	NA	Intergenic	Intergenic	-3901	NM_001320261	113444		NM_138428	ENSG00000163866	SMIM12	C1orf212	small integral membrane protein 12	protein-coding
174600	chr4	40261121	40262380	+	0	NA	Intergenic	LTR22E|LTR|ERVK	-45435	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
190809	chr6	1388801	1389130	+	0	NA	promoter-TSS (NM_001452)	promoter-TSS (NM_001452)	-611	NM_001452	2295		NM_001452	ENSG00000137273	FOXF2	FKHL6|FREAC-2|FREAC2	forkhead box F2	protein-coding
149933	chr21	36297521	36299050	+	0	NA	Intergenic	Intergenic	-21904	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
3251	chr1	13828751	13829330	+	0	NA	Intergenic	Intergenic	79625	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
93890	chr17	21216151	21216450	+	0	NA	Intergenic	Intergenic	-2139	NM_003876	8834		NM_003876	ENSG00000178307	TMEM11	C17orf35|PM1|PMI	transmembrane protein 11	protein-coding
123112	chr19	51688871	51689650	+	0	NA	promoter-TSS (NM_001316994)	promoter-TSS (NM_001316994)	-122	NM_001316994	147650		NM_207324	ENSG00000182310	SPACA6	LET7EH|LINC00085|NCRNA00085|SPACA6P	sperm acrosome associated 6	protein-coding
148223	chr20	63590171	63591430	+	0	NA	intron (NM_012384, intron 9 of 9)	intron (NM_012384, intron 9 of 9)	-16561	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
99218	chr17	49574951	49575050	+	0	NA	promoter-TSS (NM_007225)	promoter-TSS (NM_007225)	-871	NM_007225	11248		NM_007225	ENSG00000182575	NXPH3	NPH3	neurexophilin 3	protein-coding
59611	chr13	27826371	27826880	+	0	NA	intron (NR_047484, intron 3 of 4)	intron (NR_047484, intron 3 of 4)	34142	NM_145657	219409		NM_145657	ENSG00000169840	GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
134832	chr2	148631251	148631350	+	0	NA	Intergenic	L1MB2|LINE|L1	-13451	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
182229	chr5	56900321	56901300	+	0	NA	Intergenic	Intergenic	-8450	NM_001323022	133383		NM_153706	ENSG00000155542	SETD9	C5orf35	SET domain containing 9	protein-coding
170366	chr3	184607271	184607430	+	0	NA	Intergenic	Intergenic	45565	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
77976	chr15	89407021	89408180	+	0	NA	intron (NR_160724, intron 1 of 2)	CpG	7429	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
37109	chr11	13289171	13289400	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	11495	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
53804	chr12	69245751	69246300	+	0	NA	intron (NM_001300947, intron 1 of 10)	AluSz|SINE|Alu	6456	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
72980	chr15	40589501	40590500	+	0	NA	Intergenic	Intergenic	-4249	NM_144508	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
147075	chr20	53754271	53754900	+	0	NA	Intergenic	Intergenic	121124	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
11676	chr1	91828021	91828280	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	58001	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
107257	chr18	41974821	41975200	+	0	NA	intron (NM_002647, intron 4 of 24)	intron (NM_002647, intron 4 of 24)	19776	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
237259	chrX	110268951	110269250	+	0	NA	intron (NM_001171689, intron 3 of 7)	intron (NM_001171689, intron 3 of 7)	-44040	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
169642	chr3	171376171	171376330	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	84155	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
198684	chr6	108068501	108069580	+	0	NA	intron (NM_014028, intron 1 of 5)	L2c|LINE|L2	5701	NM_014028	28962		NM_014028	ENSG00000081087	OSTM1	GIPN|GL|HSPC019|OPTB5	osteoclastogenesis associated transmembrane protein 1	protein-coding
14641	chr1	145503471	145503900	+	0	NA	Intergenic	AluJb|SINE|Alu	-97907	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
165436	chr3	98536571	98537130	+	0	NA	Intergenic	Intergenic	4872	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
33127	chr10	112363921	112364750	+	0	NA	Intergenic	Intergenic	-7740	NR_028134	390003		NR_028134	ENSG00000243316	GUCY2GP	GUCY2G	guanylate cyclase 2G, pseudogene	pseudo
32743	chr10	104312421	104312880	+	0	NA	3' UTR (NM_001272013, exon 2 of 2)	3' UTR (NM_001272013, exon 2 of 2)	-10714	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
67987	chr14	74920201	74920600	+	0	NA	intron (NR_163405, intron 3 of 13)	intron (NR_163405, intron 3 of 13)	2042	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
186931	chr5	139635571	139636700	+	0	NA	Intergenic	Intergenic	-11164	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
220260	chr8	97676721	97677280	+	0	NA	intron (NM_178812, intron 2 of 11)	AluSc8|SINE|Alu	32816	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
141044	chr2	238237571	238237730	+	0	NA	TTS (NM_001282434)	TTS (NM_001282434)	2388	NM_001282434	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
229693	chr9	124657821	124658700	+	0	NA	promoter-TSS (NR_038975)	promoter-TSS (NR_038975)	-176	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
184070	chr5	93572771	93573330	+	0	NA	intron (NR_109818, intron 1 of 6)	CpG	-1707	NR_109825	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
192805	chr6	26598001	26598200	+	0	NA	exon (NM_013375, exon 2 of 3)	exon (NM_013375, exon 2 of 3)	1147	NM_013375	29777		NM_013375	ENSG00000146109	ABT1	Esf2|hABT1	activator of basal transcription 1	protein-coding
177817	chr4	123536171	123536330	+	0	NA	Intergenic	MERX|DNA|TcMar-Tigger	-113741	NR_027105	285419		NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
132154	chr2	101744851	101745150	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	46735	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
200332	chr6	133920651	133921500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-31095	NM_001253676	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
191614	chr6	12138401	12138880	+	0	NA	intron (NM_002114, intron 7 of 8)	L2a|LINE|L2	126328	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
28481	chr10	49594521	49594800	+	0	NA	Intergenic	Intergenic	-14435	NM_020984	1103		NM_020549	ENSG00000070748	CHAT	CHOACTASE|CMS1A|CMS1A2|CMS6	choline O-acetyltransferase	protein-coding
41314	chr11	65887671	65889690	+	0	NA	promoter-TSS (NM_198897)	promoter-TSS (NM_198897)	-209	NM_004214	9158		NM_004214	ENSG00000172500	FIBP	FGFIBP|FIBP-1|TROFAS	FGF1 intracellular binding protein	protein-coding
5268	chr1	25042051	25043000	+	0	NA	Intergenic	MER52A|LTR|ERV1	19022	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
82429	chr16	16312921	16313930	+	0	NA	Intergenic	L1MC5a|LINE|L1	-2797	NR_146336	110006323		NR_146336		PKD1P4-NPIPA8	-	PKD1P4-NPIPA8 readthrough	pseudo
193032	chr6	28449051	28449550	+	0	NA	Intergenic	Intergenic	-5809	NM_001012455	222696		NM_001012455	ENSG00000187987	ZSCAN23	ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1	zinc finger and SCAN domain containing 23	protein-coding
213215	chr7	133051071	133051230	+	0	NA	intron (NM_017812, intron 2 of 7)	intron (NM_017812, intron 2 of 7)	-16235	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
192661	chr6	26198401	26200480	+	0	NA	promoter-TSS (NM_003530)	promoter-TSS (NM_003530)	-76	NM_003522	8343		NM_003522	ENSG00000277224	H2BC7	H2B/g|H2BC10|H2BC4|H2BC6|H2BC8|H2BFG|HIST1H2BF	H2B clustered histone 7	protein-coding
195708	chr6	38715001	38715900	+	0	NA	intron (NM_001371, intron 1 of 91)	CpG	139	NM_001206927	1769		NM_001371	ENSG00000124721	DNAH8	ATPase|SPGF46|hdhc9	dynein axonemal heavy chain 8	protein-coding
12474	chr1	107897271	107897930	+	0	NA	TTS (NR_107006)	TTS (NR_107006)	377	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
162499	chr3	48572821	48573330	+	0	NA	intron (NM_000094, intron 85 of 118)	intron (NM_000094, intron 85 of 118)	5902	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
52069	chr12	54037851	54038530	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	4240	NR_030753	693200		NR_030753	ENSG00000207571	MIR615	MIRN615|hsa-mir-615|mir-615	microRNA 615	ncRNA
130980	chr2	87633501	87633700	+	0	NA	Intergenic	Intergenic	3840	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
38025	chr11	35137101	35137880	+	0	NA	intron (NR_120528, intron 1 of 2)	L2c|LINE|L2	542	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
198783	chr6	108893521	108893780	+	0	NA	intron (NM_001286609, intron 4 of 16)	intron (NM_001286609, intron 4 of 16)	30453	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
121016	chr19	45790071	45791280	+	0	NA	intron (NM_004943, intron 2 of 4)	AluY|SINE|Alu	2170	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
168563	chr3	148950951	148951050	+	0	NA	Intergenic	Intergenic	-40408	NM_001184721	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
6176	chr1	27433451	27434000	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	41103	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
203803	chr7	1274801	1275000	+	0	NA	Intergenic	Intergenic	42028	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
85932	chr16	57131271	57132030	+	0	NA	intron (NM_152727, intron 12 of 15)	intron (NM_152727, intron 12 of 15)	39067	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
191713	chr6	13681101	13682530	+	0	NA	intron (NM_005493, intron 2 of 13)	L1MC5a|LINE|L1	30020	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
208128	chr7	60209651	60209750	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2759523	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
54380	chr12	89856451	89856850	+	0	NA	Intergenic	Intergenic	-91043	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
165897	chr3	106299371	106299800	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-430184	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
229794	chr9	125260921	125263100	+	0	NA	intron (NM_001354298, intron 1 of 25)	CpG	184	NM_001354295	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
178237	chr4	143192051	143192880	+	0	NA	intron (NM_032557, intron 2 of 9)	intron (NM_032557, intron 2 of 9)	7548	NM_032557	84640		NM_032557	ENSG00000170185	USP38	HP43.8KD	ubiquitin specific peptidase 38	protein-coding
207054	chr7	39720751	39720850	+	0	NA	Intergenic	MER4D1|LTR|ERV1	-12768	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
95985	chr17	39173951	39174050	+	0	NA	3' UTR (NM_000723, exon 14 of 14)	3' UTR (NM_000723, exon 14 of 14)	-7839	NM_001143968	390790		NM_001143968	ENSG00000141748	ARL5C	ARL12	ADP ribosylation factor like GTPase 5C	protein-coding
84296	chr16	30085471	30085830	+	0	NA	TTS (NM_001303503)	TTS (NM_001303503)	6274	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
127500	chr2	42278271	42278750	+	0	NA	intron (NM_019063, intron 6 of 22)	AluSz|SINE|Alu	81528	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
70369	chr14	101888601	101888850	+	0	NA	intron (NM_178587, intron 5 of 11)	AluSx|SINE|Alu	-75848	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
156559	chr22	41445201	41445900	+	0	NA	intron (NM_016272, intron 1 of 1)	intron (NM_016272, intron 1 of 1)	1251	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
179927	chr5	758001	758500	+	0	NA	intron (NM_001351303, intron 4 of 13)	intron (NM_001351303, intron 4 of 13)	26479	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
50132	chr12	45644571	45644730	+	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	83271	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
128086	chr2	47893871	47894030	+	0	NA	intron (NM_001190274, intron 1 of 22)	intron (NM_001190274, intron 1 of 22)	-5231	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
14010	chr1	120717351	120717450	+	0	NA	Intergenic	Intergenic	-6539	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
70167	chr14	100313851	100314150	+	0	NA	Intergenic	Intergenic	6141	NR_029906	442910		NR_029906	ENSG00000198984	MIR345	MIRN345|hsa-mir-345|mir-345	microRNA 345	ncRNA
167681	chr3	130098101	130098650	+	0	NA	TTS (NM_001136152)	TTS (NM_001136152)	-4071	NR_146710	105374105		NR_146710		LINC02014	-	long intergenic non-protein coding RNA 2014	ncRNA
58504	chr12	132171421	132171680	+	0	NA	Intergenic	Intergenic	18145	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
111557	chr19	4047901	4048430	+	0	NA	exon (NM_001317990, exon 3 of 3)	exon (NM_001317990, exon 3 of 3)	17364	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
183925	chr5	87399521	87399780	+	0	NA	intron (NM_001239, intron 6 of 8)	intron (NM_001239, intron 6 of 8)	13254	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
207440	chr7	44564351	44564780	+	0	NA	TTS (NM_001257189)	TTS (NM_001257189)	9973	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
106370	chr18	13278151	13278450	+	0	NA	intron (NM_001378099, intron 2 of 6)	intron (NM_001378099, intron 2 of 6)	938	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
59040	chr13	20489271	20489430	+	0	NA	intron (NM_015974, intron 3 of 7)	intron (NM_015974, intron 3 of 7)	36507	NM_015974	51084		NM_015974	ENSG00000165475	CRYL1	GDH|HEL30|gul3DH|lambda-CRY	crystallin lambda 1	protein-coding
221669	chr8	126066901	126067100	+	0	NA	Intergenic	Intergenic	-115803	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
112012	chr19	5029751	5030500	+	0	NA	intron (NM_001370093, intron 2 of 11)	AluJb|SINE|Alu	61012	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
152092	chr22	19776501	19776930	+	0	NA	intron (NM_005992, intron 8 of 9)	intron (NM_005992, intron 8 of 9)	15937	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
106845	chr18	24039401	24039830	+	0	NA	intron (NM_001135993, intron 1 of 13)	AluJr4|SINE|Alu	-24155	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
104904	chr17	81895701	81896100	+	0	NA	intron (NM_001002249, intron 3 of 3)	AluSc5|SINE|Alu	3973	NM_001289416	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
233310	chr9	137410601	137410830	+	0	NA	intron (NM_017820, intron 1 of 21)	intron (NM_017820, intron 1 of 21)	12447	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
228510	chr9	100350921	100351250	+	0	NA	intron (NM_017746, intron 1 of 14)	MIRb|SINE|MIR	1486	NM_001161584	54881		NM_017746	ENSG00000136891	TEX10	Ipi1|bA208F1.2	testis expressed 10	protein-coding
44943	chr11	116782251	116782350	+	0	NA	intron (NM_001317086, intron 10 of 12)	intron (NM_001317086, intron 10 of 12)	5723	NM_003904	8882		NM_003904	ENSG00000109917	ZPR1	GKAF|ZNF259	ZPR1 zinc finger	protein-coding
45038	chr11	117036671	117036830	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	61678	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
89513	chr16	89167171	89168380	+	0	NA	intron (NR_046200, intron 2 of 2)	intron (NR_046200, intron 2 of 2)	1392	NR_046200	400558		NR_046200	ENSG00000205015	LINC02138	-	long intergenic non-protein coding RNA 2138	ncRNA
215629	chr8	94571	94800	+	0	NA	intron (NR_168395, intron 1 of 7)	intron (NR_168395, intron 1 of 7)	18417	NR_168395	101927506		NR_168395		LOC101927506	-	uncharacterized LOC101927506	ncRNA
170730	chr3	188164251	188164750	+	0	NA	intron (NM_001375462, intron 1 of 11)	intron (NM_001375462, intron 1 of 11)	10343	NM_001375463	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
19955	chr1	184865971	184866130	+	0	NA	intron (NM_052966, intron 5 of 13)	L2c|LINE|L2	108458	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
239146	chrY	11325751	11325930	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1095750	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
120183	chr19	42266721	42267000	+	0	NA	Intergenic	AluYk2|SINE|Alu	-1670	NM_001304815	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
12732	chr1	109550371	109550880	+	0	NA	intron (NM_006496, intron 1 of 8)	AluY|SINE|Alu	2010	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
122700	chr19	49914471	49914630	+	0	NA	intron (NM_001193357, intron 1 of 1)	intron (NM_001193357, intron 1 of 1)	-14152	NM_012068	22809		NM_012068	ENSG00000169136	ATF5	ATFX|HMFN0395	activating transcription factor 5	protein-coding
234202	chrX	12952621	12952900	+	0	NA	Intergenic	AluJb|SINE|Alu	-9460	NR_030727	349408		NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
139640	chr2	226649921	226650400	+	0	NA	Intergenic	Intergenic	8633	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
235058	chrX	40146101	40146800	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	30827	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
172860	chr4	3297271	3297630	+	0	NA	Intergenic	Intergenic	-16697	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
64528	chr14	24434171	24434330	+	0	NA	intron (NM_015299, intron 5 of 7)	intron (NM_015299, intron 5 of 7)	4296	NM_015299	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
165391	chr3	94249421	94249750	+	0	NA	Intergenic	Intergenic	186524	NM_022072	63899		NM_022072	ENSG00000178694	NSUN3	COXPD48|MST077|MSTP077	NOP2/Sun RNA methyltransferase 3	protein-coding
91447	chr17	4787251	4787900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1211	NM_182566	284013		NM_182566	ENSG00000182853	VMO1	ERGA6350|PRO21055	vitelline membrane outer layer 1 homolog	protein-coding
221580	chr8	125271351	125271650	+	0	NA	intron (NR_146191, intron 6 of 8)	intron (NR_146191, intron 6 of 8)	-158858	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
104654	chr17	81471451	81471550	+	0	NA	Intergenic	Intergenic	-20312	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
152149	chr22	19989851	19990480	+	0	NA	intron (NM_001670, intron 3 of 19)	intron (NM_001670, intron 3 of 19)	26412	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
164830	chr3	71009901	71010100	+	0	NA	intron (NM_001244810, intron 12 of 20)	AluJr|SINE|Alu	54924	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
15866	chr1	151449921	151450480	+	0	NA	intron (NM_015100, intron 1 of 18)	AluSx1|SINE|Alu	-7995	NM_207171	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
10910	chr1	83692771	83693130	+	0	NA	intron (NR_119375, intron 2 of 2)	intron (NR_119375, intron 2 of 2)	167596	NR_119374	101927560		NR_119374	ENSG00000233008	LOC101927560	-	uncharacterized LOC101927560	ncRNA
228767	chr9	110252151	110253030	+	0	NA	intron (NM_003329, intron 1 of 4)	intron (NM_003329, intron 1 of 4)	3917	NM_003329	7295		NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1|TXN1|Trx80	thioredoxin	protein-coding
9703	chr1	53099221	53099480	+	0	NA	intron (NM_001287595, intron 5 of 10)	intron (NM_001287595, intron 5 of 10)	37137	NM_001199081	127435		NM_153703	ENSG00000174348	PODN	PCAN|SLRR5A	podocan	protein-coding
46341	chr11	125568151	125568400	+	0	NA	Intergenic	AluY|SINE|Alu	-1202	NM_004879	9538		NM_004879	ENSG00000149547	EI24	EPG4|PIG8|TP53I8	EI24 autophagy associated transmembrane protein	protein-coding
212919	chr7	130910871	130911630	+	0	NA	intron (NR_110472, intron 2 of 3)	Charlie4z|DNA|hAT-Charlie	2060	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
31184	chr10	91195651	91196050	+	0	NA	intron (NM_001257101, intron 1 of 9)	LTR16E2|LTR|ERVL	-24301	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
141450	chr2	241039701	241039900	+	0	NA	intron (NM_001080437, intron 6 of 31)	intron (NM_001080437, intron 6 of 31)	41182	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
223648	chr8	144353921	144354180	+	0	NA	exon (NM_001252404, exon 2 of 4)	exon (NM_001252404, exon 2 of 4)	881	NM_001252404	340393		NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
65500	chr14	51885471	51885800	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	25023	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
19437	chr1	174398051	174398350	+	0	NA	intron (NM_001366447, intron 13 of 20)	MER77B|LTR|ERVL	-49764	NM_005684	9293		NM_005684	ENSG00000203737	GPR52	-	G protein-coupled receptor 52	protein-coding
139996	chr2	230943201	230943830	+	0	NA	Intergenic	Intergenic	-18273	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
174422	chr4	39453251	39454400	+	0	NA	TTS (NM_001024921)	TTS (NM_001024921)	5097	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
40043	chr11	62707521	62707880	+	0	NA	promoter-TSS (NM_001122955)	promoter-TSS (NM_001122955)	7	NM_001122955	26580		NM_032667	ENSG00000168000	BSCL2	GNG3LG|HMN5|HMN5C|HMND13|PELD|SPG17	BSCL2 lipid droplet biogenesis associated, seipin	protein-coding
129318	chr2	68719521	68720950	+	0	NA	Intergenic	L5|LINE|RTE-X	-14576	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
160213	chr3	23921071	23921980	+	0	NA	TTS (NM_001253383)	TTS (NM_001253383)	4393	NM_001253383	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
104753	chr17	81688671	81689030	+	0	NA	intron (NM_004712, intron 5 of 21)	intron (NM_004712, intron 5 of 21)	4839	NM_004712	9146		NM_004712	ENSG00000185359	HGS	HRS	hepatocyte growth factor-regulated tyrosine kinase substrate	protein-coding
177311	chr4	109655551	109656350	+	0	NA	intron (NM_017918, intron 1 of 7)	MER5A|DNA|hAT-Charlie	47495	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
78144	chr15	90398671	90399330	+	0	NA	intron (NM_003870, intron 2 of 37)	AluSz6|SINE|Alu	10758	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
33329	chr10	116682321	116682650	+	0	NA	intron (NM_025015, intron 7 of 11)	intron (NM_025015, intron 7 of 11)	-12203	NM_001350930	143379		NM_144661	ENSG00000165863	SPMIP5	C10orf82	sperm microtubule inner protein 5	protein-coding
151451	chr21	46169101	46169650	+	0	NA	intron (NM_032261, intron 1 of 3)	SVA_E|Retroposon|SVA	-13796	NM_001320412	10841		NM_006657	ENSG00000160282	FTCD	LCHC1	formimidoyltransferase cyclodeaminase	protein-coding
136544	chr2	177350371	177350880	+	0	NA	intron (NR_026966, intron 1 of 8)	intron (NR_026966, intron 1 of 8)	-36743	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
160982	chr3	37223021	37223350	+	0	NA	Intergenic	Intergenic	-20086	NM_002078	2803		NM_002078	ENSG00000144674	GOLGA4	CRPF46|GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
187176	chr5	140643171	140643330	+	0	NA	intron (NM_018502, intron 7 of 11)	AluSx|SINE|Alu	3799	NM_018502	55374		NM_018502	ENSG00000113119	TMCO6	PRO1580	transmembrane and coiled-coil domains 6	protein-coding
157047	chr22	42576801	42577230	+	0	NA	non-coding (NR_002184, exon 4 of 7)	non-coding (NR_002184, exon 4 of 7)	4996	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
114228	chr19	11480271	11480600	+	0	NA	intron (NM_001420, intron 1 of 6)	CpG	611	NM_032281	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
103233	chr17	77497721	77498380	+	0	NA	intron (NM_001293697, intron 9 of 9)	intron (NM_001293697, intron 9 of 9)	22415	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
26224	chr10	14583181	14584300	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-11365	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
37307	chr11	14751871	14752600	+	0	NA	intron (NM_001363569, intron 1 of 15)	L3|LINE|CR1	108431	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
17264	chr1	156387001	156387630	+	0	NA	Intergenic	Intergenic	18104	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
38395	chr11	44926901	44927700	+	0	NA	intron (NM_130783, intron 9 of 9)	intron (NM_130783, intron 9 of 9)	22860	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
143409	chr20	29443401	29444080	+	0	NA	Intergenic	LTR43-int|LTR|ERV1	-4777	NR_134504	105379477		NR_134504		LOC105379477	-	uncharacterized LOC105379477	ncRNA
178169	chr4	142371601	142372000	+	0	NA	intron (NM_001385334, intron 6 of 24)	L1MA4|LINE|L1	31333	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
69572	chr14	97021101	97021750	+	0	NA	Intergenic	Intergenic	77846	NR_104113	145249		NR_104113		LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
158375	chr22	50479701	50480500	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1443	NM_001369882	79924		NM_024866	ENSG00000128165	ADM2	AM2|dJ579N16.4	adrenomedullin 2	protein-coding
133280	chr2	113511971	113512850	+	0	NA	Intergenic	AluSc8|SINE|Alu	13326	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
56938	chr12	120466271	120466980	+	0	NA	intron (NM_003769, intron 1 of 3)	AluJo|SINE|Alu	3123	NM_003769	8683		NM_003769	ENSG00000111786	SRSF9	SFRS9|SRp30c	serine and arginine rich splicing factor 9	protein-coding
210915	chr7	101214871	101215230	+	0	NA	intron (NM_001084, intron 6 of 18)	intron (NM_001084, intron 6 of 18)	2531	NM_001084	8985		NM_001084	ENSG00000106397	PLOD3	LH3	procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	protein-coding
84485	chr16	30485221	30486080	+	0	NA	intron (NM_002209, intron 9 of 30)	AluJr|SINE|Alu	12908	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
158840	chr3	9800571	9800830	+	0	NA	intron (NM_005718, intron 3 of 5)	AluSq2|SINE|Alu	7618	NM_001198780	10093		NM_005718	ENSG00000241553	ARPC4	ARC20|DEVLO|P20-ARC	actin related protein 2/3 complex subunit 4	protein-coding
125941	chr2	25195671	25195850	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8553	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
13986	chr1	120615371	120615700	+	0	NA	intron (NR_144516, intron 5 of 43)	intron (NR_144516, intron 5 of 43)	49901	NR_144516	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
194801	chr6	34236301	34237700	+	0	NA	5' UTR (NM_145901, exon 1 of 5)	intron (NM_001319081, intron 1 of 4)	127	NM_145902	3159		NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding
139968	chr2	230876901	230877100	+	0	NA	intron (NM_001012514, intron 3 of 4)	intron (NM_001012514, intron 3 of 4)	-9546	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
94254	chr17	28688271	28688680	+	0	NA	intron (NM_003170, intron 24 of 36)	intron (NM_003170, intron 24 of 36)	21629	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
56289	chr12	112303071	112303590	+	0	NA	intron (NM_001109662, intron 7 of 75)	intron (NM_001109662, intron 7 of 75)	79101	NM_001109662	283450		NM_173813	ENSG00000173064	HECTD4	C12ord51|C12orf51|HEEL|NEDSSCC|POTAGE	HECT domain E3 ubiquitin protein ligase 4	protein-coding
38360	chr11	44601151	44601850	+	0	NA	intron (NM_002231, intron 4 of 9)	intron (NM_002231, intron 4 of 9)	35837	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
213493	chr7	139054001	139054430	+	0	NA	intron (NM_020119, intron 10 of 12)	intron (NM_020119, intron 10 of 12)	-10058	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
82501	chr16	17403621	17404080	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	67110	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
94432	chr17	29145071	29145850	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	-5071	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
49882	chr12	38934721	38934980	+	0	NA	Intergenic	HERVIP10F-int|LTR|ERV1	-29259	NM_153634	144402		NM_153634	ENSG00000139117	CPNE8	-	copine 8	protein-coding
148841	chr21	8404601	8405000	+	0	NA	intron (NR_038958, intron 2 of 6).2	(AC)n|Simple_repeat|Simple_repeat	7874	NR_146154	109910382		NR_146154		RNA28SN3	-	RNA, 28S ribosomal N3	rRNA
157229	chr22	43263051	43264550	+	0	NA	intron (NM_173050, intron 4 of 21)	intron (NM_173050, intron 4 of 21)	-12142	NR_134582	101927447		NR_134582	ENSG00000203527	SCUBE1-AS1	-	SCUBE1 antisense RNA 1	ncRNA
115644	chr19	16113771	16114730	+	0	NA	intron (NM_005370, intron 1 of 7)	AluJb|SINE|Alu	2361	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
96716	chr17	41633551	41634280	+	0	NA	intron (NR_033415, intron 4 of 10)	intron (NR_033415, intron 4 of 10)	6284	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
189256	chr5	172043851	172044180	+	0	NA	3' UTR (NM_005990, exon 19 of 19)	3' UTR (NM_005990, exon 19 of 19)	-37377	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
133334	chr2	113905821	113906550	+	0	NA	intron (NM_001277140, intron 1 of 11)	L1MB3|LINE|L1	-15193	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128534	chr2	60803971	60804130	+	0	NA	Intergenic	AluJr|SINE|Alu	47782	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
236529	chrX	72106751	72106850	+	0	NA	intron (NM_001013627, intron 1 of 7)	L1PA6|LINE|L1	25115	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
106527	chr18	21110271	21112530	+	0	NA	5' UTR (NM_005406, exon 1 of 33)	5' UTR (NM_005406, exon 1 of 33)	413	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
51412	chr12	52007501	52008550	+	0	NA	promoter-TSS (NR_146770)	promoter-TSS (NR_146770)	-370	NR_146770	692159		NR_146770		TAMALIN-AS1	GRASP-AS1|GRASPOS	TAMALIN antisense RNA 1	ncRNA
133001	chr2	111549301	111549580	+	0	NA	Intergenic	Intergenic	-54279	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
42204	chr11	68009951	68010480	+	0	NA	promoter-TSS (NM_001290058)	promoter-TSS (NM_001290058)	-112	NM_000694	221		NM_000694	ENSG00000006534	ALDH3B1	ALDH4|ALDH7	aldehyde dehydrogenase 3 family member B1	protein-coding
98565	chr17	47707701	47707980	+	0	NA	intron (NM_014726, intron 6 of 8)	intron (NM_014726, intron 6 of 8)	12576	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
24436	chr1	243597521	243597880	+	0	NA	intron (NM_005465, intron 8 of 13)	AluJr|SINE|Alu	245582	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
86143	chr16	57725201	57725400	+	0	NA	intron (NM_001289162, intron 13 of 18)	THE1D|LTR|ERVL-MaLR	-10470	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
115743	chr19	16285751	16286450	+	0	NA	Intergenic	L1M5|LINE|L1	-38726	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
223960	chr9	1805721	1806080	+	0	NA	Intergenic	L1PA5|LINE|L1	-209447	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
194665	chr6	33635001	33635530	+	0	NA	intron (NM_002224, intron 1 of 57)	L2c|LINE|L2	-1520	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
57961	chr12	123907951	123908450	+	0	NA	intron (NM_207437, intron 56 of 77)	intron (NM_207437, intron 56 of 77)	63859	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
225191	chr9	34047471	34047650	+	0	NA	intron (NM_001370059, intron 1 of 28)	intron (NM_001370059, intron 1 of 28)	1327	NM_001370064	55833		NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding
26712	chr10	22662451	22663050	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	51358	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
8974	chr1	44631071	44633130	+	0	NA	5' UTR (NM_001376489, exon 1 of 11)	5' UTR (NM_001376489, exon 1 of 11)	132	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
37936	chr11	34252601	34252800	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	105310	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
150145	chr21	38660471	38660830	+	0	NA	promoter-TSS (NM_001243428)	promoter-TSS (NM_001243428)	17	NM_001243428	2078		NM_004449	ENSG00000157554	ERG	LMPHM14|erg-3|p55	ETS transcription factor ERG	protein-coding
98590	chr17	47736901	47737580	+	0	NA	intron (NM_013351, intron 1 of 5)	intron (NM_013351, intron 1 of 5)	4004	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
229288	chr9	120755751	120756200	+	0	NA	TTS (NM_012164)	TTS (NM_012164)	37441	NM_001375890	26190		NM_012164	ENSG00000119402	FBXW2	FBW2|Fwd2|Md6	F-box and WD repeat domain containing 2	protein-coding
66758	chr14	64520751	64521330	+	0	NA	intron (NR_110550, intron 2 of 3)	AluJb|SINE|Alu	-15827	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
46649	chr11	128695601	128696580	+	0	NA	promoter-TSS (NR_038908)	promoter-TSS (NR_038908)	-67	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
63496	chr13	114211871	114212430	+	0	NA	Intergenic	Intergenic	-22695	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
21993	chr1	209755851	209757430	+	0	NA	intron (NM_025228, intron 1 of 16)	intron (NM_025228, intron 1 of 16)	587	NM_025228	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
52575	chr12	56169401	56169950	+	0	NA	exon (NM_001330288, exon 25 of 29)	exon (NM_001330288, exon 25 of 29)	11316	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
174657	chr4	40897521	40898030	+	0	NA	intron (NM_173075, intron 9 of 16)	intron (NM_173075, intron 9 of 16)	-40583	NM_001166054	323		NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
219838	chr8	81828621	81828880	+	0	NA	intron (NR_145473, intron 2 of 5)	MLT1E2|LTR|ERVL-MaLR	13435	NR_145473	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
85430	chr16	50370301	50370650	+	0	NA	Intergenic	Intergenic	-1487	NM_013263	29117		NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4|SMARCI1	bromodomain containing 7	protein-coding
21822	chr1	207329051	207329150	+	0	NA	intron (NM_001300904, intron 5 of 10)	MER115|DNA|hAT-Tip100	7422	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
125675	chr2	20243251	20243350	+	0	NA	Intergenic	Intergenic	-17867	NM_001006946	6382		NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
223305	chr8	143805101	143805880	+	0	NA	intron (NM_182706, intron 18 of 36).2	CpG-27744	7552	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
238505	chrX	153645901	153646100	+	0	NA	intron (NM_001395, intron 1 of 3)	L1ME4c|LINE|L1	-1203	NM_001318503	1852		NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
196674	chr6	44527321	44527580	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	24431	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
28765	chr10	62038401	62039200	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-10557	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
74200	chr15	55937001	55937200	+	0	NA	intron (NM_006154, intron 4 of 28)	intron (NM_006154, intron 4 of 28)	-19964	NM_001284338	4734		NM_006154	ENSG00000069869	NEDD4	NEDD4-1|RPF1	NEDD4 E3 ubiquitin protein ligase	protein-coding
96388	chr17	40123201	40124980	+	0	NA	intron (NM_001365920, intron 1 of 7)	intron (NM_001365920, intron 1 of 7)	2119	NM_001365919	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
209976	chr7	92813301	92814580	+	0	NA	intron (NM_001145306, intron 2 of 7)	intron (NM_001145306, intron 2 of 7)	20019	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
13262	chr1	112717321	112717830	+	0	NA	Intergenic	Intergenic	-1330	NM_001004440	284467		NM_182759	ENSG00000184599	TAFA3	FAM19A3|TAFA-3	TAFA chemokine like family member 3	protein-coding
69776	chr14	99175851	99176550	+	0	NA	intron (NM_022898, intron 2 of 2)	CpG	95997	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
70879	chr14	103845501	103845700	+	0	NA	intron (NM_015316, intron 1 of 16)	intron (NM_015316, intron 1 of 16)	1975	NM_015316	23368		NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
55213	chr12	101795771	101796380	+	0	NA	intron (NM_024312, intron 2 of 20)	intron (NM_024312, intron 2 of 20)	34884	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
157172	chr22	42980751	42981850	+	0	NA	intron (NM_001184970, intron 1 of 10)	SVA_E|Retroposon|SVA	-20964	NM_001349970	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
96512	chr17	40330101	40330900	+	0	NA	intron (NM_001145301, intron 1 of 8)	intron (NM_001145301, intron 1 of 8)	-11666	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
19089	chr1	171226871	171227030	+	0	NA	Intergenic	Intergenic	-21521	NM_001282694	2326		NM_002021	ENSG00000010932	FMO1	-	flavin containing dimethylaniline monoxygenase 1	protein-coding
193683	chr6	31087221	31088030	+	0	NA	Intergenic	Intergenic	24950	NM_014070	29113		NM_014070	ENSG00000204542	C6orf15	STG	chromosome 6 open reading frame 15	protein-coding
14147	chr1	121080701	121080900	+	0	NA	intron (NR_160941, intron 2 of 2)	LTR30|LTR|ERV1	-6545	NR_164759	2210		NM_001004340	ENSG00000291135	FCGR1BP	CD34|CD64b|FCG1|FCGR1|FCGR1B|FcRI|FcgammaRIa|IGFR1|IGFRB	Fc gamma receptor Ib, pseudogene	pseudo
190998	chr6	3061501	3061700	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-2367	NM_001317061	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
194350	chr6	32933401	32934030	+	0	NA	TTS (NM_002118).3	TTS (NM_002118).3	7313	NM_002118	3109		NM_002118	ENSG00000242574	HLA-DMB	D6S221E|RING7	major histocompatibility complex, class II, DM beta	protein-coding
185039	chr5	115627571	115627900	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-1556	NM_001164469	100302736		NM_001164468	ENSG00000251201	TMED7-TICAM2	MyD88-4|TICAM-2|TICAM2|TIRAP3|TIRP|TRAM	TMED7-TICAM2 readthrough	protein-coding
174907	chr4	49098871	49099030	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	112308	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
155269	chr22	38051071	38051680	+	0	NA	Intergenic	L2b|LINE|L2	-5880	NM_001039584	9463		NM_012407	ENSG00000100151	PICK1	PICK|PRKCABP	protein interacting with PRKCA 1	protein-coding
33621	chr10	119616971	119617150	+	0	NA	Intergenic	MIRb|SINE|MIR	-20031	NM_003252	7073		NM_003252	ENSG00000151923	TIAL1	TCBP|TIAR	TIA1 cytotoxic granule associated RNA binding protein like 1	protein-coding
28790	chr10	62079821	62080350	+	0	NA	intron (NM_001244638, intron 5 of 6)	intron (NM_001244638, intron 5 of 6)	30728	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
78830	chr15	99731701	99731900	+	0	NA	exon (NM_152449, exon 3 of 6)	exon (NM_152449, exon 3 of 6)	1637	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
45255	chr11	117995551	117996050	+	0	NA	intron (NM_001558, intron 6 of 6)	intron (NM_001558, intron 6 of 6)	9406	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
59117	chr13	21319001	21319430	+	0	NA	non-coding (NR_144554, exon 1 of 1)	non-coding (NR_144554, exon 1 of 1)	179	NR_144554	2871		NR_144554		GRK6P1	GPRK6L|GPRK6P|GRK6PS	G protein-coupled receptor kinase 6 pseudogene 1	pseudo
79787	chr16	1384271	1384700	+	0	NA	intron (NM_001372107, intron 10 of 14)	intron (NM_001372107, intron 10 of 14)	-4833	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
132715	chr2	109063121	109063380	+	0	NA	Intergenic	Intergenic	-65955	NM_001099289	344558		NM_001099289	ENSG00000172985	SH3RF3	POSH2|SH3MD4	SH3 domain containing ring finger 3	protein-coding
48622	chr12	10376871	10377500	+	0	NA	intron (NR_120430, intron 2 of 3)	L1ME1|LINE|L1	12856	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
91826	chr17	7177101	7178530	+	0	NA	intron (NM_001671, intron 2 of 8)	intron (NM_001671, intron 2 of 8)	1555	NM_001671	432		NM_001671	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
202685	chr6	158797671	158797900	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-20194	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
135818	chr2	170354951	170355250	+	0	NA	intron (NR_045682, intron 8 of 35)	intron (NR_045682, intron 8 of 35)	-4157	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
13591	chr1	116339351	116339450	+	0	NA	Intergenic	L1ME4a|LINE|L1	-33844	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
5384	chr1	25444821	25445280	+	0	NA	intron (NM_001282564, intron 1 of 8)	AluJo|SINE|Alu	14153	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
72482	chr15	32595601	32595800	+	0	NA	intron (NM_001282494, intron 2 of 18).3	AluY|SINE|Alu	2244	NM_001282494	643699		NM_001282494	ENSG00000232653	GOLGA8N	GOLGA8R	golgin A8 family member N	protein-coding
196773	chr6	45495721	45496200	+	0	NA	intron (NM_001278478, intron 4 of 5)	intron (NM_001278478, intron 4 of 5)	73685	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
148396	chr20	63932721	63932980	+	0	NA	3' UTR (NM_025219, exon 5 of 5)	3' UTR (NM_025219, exon 5 of 5)	8694	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
199570	chr6	118899071	118899330	+	0	NA	intron (NM_001378365, intron 7 of 7)	L2a|LINE|L2	5048	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
1966	chr1	6591001	6591980	+	0	NA	3' UTR (NM_001324309, exon 4 of 4)	3' UTR (NM_001324309, exon 4 of 4)	11379	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
214134	chr7	144293331	144295050	+	0	NA	intron (NR_126022, intron 3 of 4).3	CpG	-5183	NR_002158	401428		NR_002158	ENSG00000170356	OR2A20P	OR2A20	olfactory receptor family 2 subfamily A member 20 pseudogene	pseudo
236390	chrX	71106551	71107050	+	0	NA	promoter-TSS (NM_001025265)	promoter-TSS (NM_001025265)	-60	NM_001025265	158830		NM_001025265	ENSG00000204165	CXorf65	-	chromosome X open reading frame 65	protein-coding
9932	chr1	54481161	54482150	+	0	NA	Intergenic	L2c|LINE|L2	-66573	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
212852	chr7	130844471	130844630	+	0	NA	Intergenic	Intergenic	32260	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
208804	chr7	73621801	73622100	+	0	NA	intron (NR_134541, intron 1 of 15)	(CCCT)n|Simple_repeat|Simple_repeat	2572	NM_032953	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
126076	chr2	25796001	25796200	+	0	NA	intron (NM_018263, intron 4 of 11)	intron (NM_018263, intron 4 of 11)	-1409	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
163564	chr3	51857451	51857550	+	0	NA	Intergenic	Intergenic	-4115	NM_203424	389123		NM_203424	ENSG00000184345	IQCF2	-	IQ motif containing F2	protein-coding
175771	chr4	77784301	77785130	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluJb|SINE|Alu	34349	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
10635	chr1	70207771	70208780	+	0	NA	intron (NM_001350606, intron 1 of 12)	intron (NM_001350606, intron 1 of 12)	2579	NM_001190987	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
202418	chr6	157892421	157892680	+	0	NA	intron (NM_016224, intron 4 of 17)	intron (NM_016224, intron 4 of 17)	69304	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
26516	chr10	21173921	21174380	+	0	NA	promoter-TSS (NM_213569)	promoter-TSS (NM_213569)	37	NM_213569	10529		NM_006393	ENSG00000078114	NEBL	C10orf113|LASP2|LNEBL|bA165O3.1	nebulette	protein-coding
35418	chr11	1417651	1417900	+	0	NA	intron (NM_001256630, intron 1 of 19)	intron (NM_001256630, intron 1 of 19)	6623	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
131803	chr2	98557571	98557930	+	0	NA	intron (NM_001134224, intron 17 of 25)	intron (NM_001134224, intron 17 of 25)	50762	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
75228	chr15	64857651	64857750	+	0	NA	intron (NM_001195059, intron 2 of 4)	intron (NM_001195059, intron 2 of 4)	15785	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
182096	chr5	56019121	56019580	+	0	NA	Intergenic	Intergenic	24183	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
193784	chr6	31395921	31396280	+	0	NA	intron (NR_148222, intron 1 of 1)	intron (NR_148222, intron 1 of 1)	2408	NR_148223	101929072		NR_148222		MICA-AS1	-	MICA antisense RNA 1	ncRNA
200689	chr6	137258201	137258600	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-39015	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
154190	chr22	31343621	31343880	+	0	NA	intron (NM_014323, intron 1 of 4)	intron (NM_014323, intron 1 of 4)	2596	NM_032052	23598		NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ/BTB and AT hook containing zinc finger 1	protein-coding
130687	chr2	86496471	86496630	+	0	NA	Intergenic	AluJo|SINE|Alu	55089	NM_001146688	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
114110	chr19	11132971	11133330	+	0	NA	3' UTR (NM_001195798, exon 18 of 18)	3' UTR (NM_001195798, exon 18 of 18)	19676	NR_106946	102465534		NR_106946	ENSG00000284553	MIR6886	hsa-mir-6886	microRNA 6886	ncRNA
217669	chr8	30099251	30100550	+	0	NA	intron (NM_015344, intron 1 of 3)	L2b|LINE|L2	4492	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
199243	chr6	111832901	111833630	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	39806	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
214616	chr7	150719521	150719930	+	0	NA	intron (NM_001303630, intron 2 of 4)	intron (NM_001303630, intron 2 of 4)	3112	NM_130759	170575		NM_130759	ENSG00000213203	GIMAP1	HIMAP1|IAN2|IMAP1|IMAP38	GTPase, IMAP family member 1	protein-coding
199327	chr6	113854871	113855480	+	0	NA	Intergenic	Intergenic	-2170	NM_002356	4082		NM_002356	ENSG00000277443	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
29146	chr10	68625371	68625830	+	0	NA	intron (NM_030625, intron 3 of 11)	intron (NM_030625, intron 3 of 11)	65263	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
16240	chr1	153952071	153952430	+	0	NA	exon (NM_181715, exon 10 of 14)	exon (NM_181715, exon 10 of 14)	-5532	NM_014856	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
164054	chr3	53837321	53837580	+	0	NA	intron (NM_018397, intron 2 of 8)	intron (NM_018397, intron 2 of 8)	8969	NM_018397	55349		NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
127557	chr2	42351601	42352200	+	0	NA	intron (NM_001319036, intron 3 of 3)	AluJb|SINE|Alu	8138	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
168914	chr3	152339151	152339450	+	0	NA	TTS (NR_132656)	TTS (NR_132656)	1690	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
191278	chr6	6515751	6516650	+	0	NA	intron (NR_026970, intron 3 of 7)	intron (NR_026970, intron 3 of 7)	-72520	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
148368	chr20	63863601	63864600	+	0	NA	non-coding (NR_165312, exon 1 of 1)	non-coding (NR_165312, exon 1 of 1)	973	NR_165313	112268269		NR_165198		LOC112268269	-	uncharacterized LOC112268269	ncRNA
76107	chr15	72503951	72505380	+	0	NA	intron (NM_005744, intron 1 of 13)	LTR28B|LTR|ERV1	30335	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
93423	chr17	18432451	18432750	+	0	NA	TTS (NR_146075)	TTS (NR_146075)	5739	NR_146075	339241		NR_146075		KRT17P2	-	keratin 17 pseudogene 2	pseudo
200560	chr6	136276251	136277050	+	0	NA	intron (NM_001301038, intron 4 of 12)	intron (NM_001301038, intron 4 of 12)	13196	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
110061	chr19	1487971	1488730	+	0	NA	intron (NM_017573, intron 2 of 14)	intron (NM_017573, intron 2 of 14)	2100	NM_017573	54760		NM_017573	ENSG00000115257	PCSK4	PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding
107081	chr18	35026171	35026950	+	0	NA	intron (NM_001143826, intron 2 of 7)	intron (NM_001143826, intron 2 of 7)	-14853	NR_046177	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
217580	chr8	29503101	29503300	+	0	NA	Intergenic	Intergenic	-152516	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
218006	chr8	38414671	38415430	+	0	NA	intron (NM_001354367, intron 13 of 17)	intron (NM_001354367, intron 13 of 17)	27919	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
179620	chr4	186068901	186069480	+	0	NA	promoter-TSS (NM_003265)	promoter-TSS (NM_003265)	34	NM_003265	7098		NM_003265	ENSG00000164342	TLR3	CD283|IIAE2|IMD83	toll like receptor 3	protein-coding
152238	chr22	20163701	20164830	+	0	NA	Intergenic	Intergenic	-13210	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
101163	chr17	65103871	65104030	+	0	NA	intron (NR_110801, intron 2 of 2)	AluJo|SINE|Alu	3138	NR_110801	100507002		NR_110801		LOC100507002	-	uncharacterized LOC100507002	ncRNA
12536	chr1	108585171	108585680	+	0	NA	intron (NM_001010883, intron 1 of 10)	intron (NM_001010883, intron 1 of 10)	25325	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
161984	chr3	46355701	46356300	+	0	NA	intron (NM_001123396, intron 1 of 1)	intron (NM_001123396, intron 1 of 1)	1889	NM_001123396	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
11132	chr1	86702701	86703080	+	0	NA	TTS (NR_135838)	TTS (NR_135838)	1603	NR_135837	105378828		NR_135837	ENSG00000236915	CLCA4-AS1	-	CLCA4 antisense RNA 1	ncRNA
93375	chr17	18247101	18247600	+	0	NA	exon (NM_002018, exon 21 of 30)	exon (NM_002018, exon 21 of 30)	11388	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
144191	chr20	34241001	34241400	+	0	NA	promoter-TSS (NM_001672)	promoter-TSS (NM_001672)	-223	NM_001672	434		NM_001672	ENSG00000101440	ASIP	AGSW|AGTI|AGTIL|ASP|SHEP9	agouti signaling protein	protein-coding
238164	chrX	136858071	136858230	+	0	NA	Intergenic	L2|LINE|L2	21121	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
219467	chr8	73346301	73347100	+	0	NA	intron (NR_125388, intron 1 of 5)	L1MB5|LINE|L1	9761	NR_125388	101926926		NR_125388	ENSG00000250295	RDH10-AS1	-	RDH10 antisense RNA 1	ncRNA
182068	chr5	55959021	55959780	+	0	NA	intron (NR_157112, intron 8 of 17)	intron (NR_157112, intron 8 of 17)	35563	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
33570	chr10	119444971	119445780	+	0	NA	intron (NM_005308, intron 12 of 15)	intron (NM_005308, intron 12 of 15)	67403	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
134442	chr2	143151271	143151630	+	0	NA	intron (NM_018460, intron 1 of 13)	intron (NM_018460, intron 1 of 13)	22031	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
80459	chr16	2684521	2685130	+	0	NA	intron (NM_018992, intron 1 of 5)	AluSx4|SINE|Alu	2302	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
143224	chr20	24971721	24972130	+	0	NA	intron (NM_020531, intron 4 of 8)	intron (NM_020531, intron 4 of 8)	20826	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
56547	chr12	116882671	116882830	+	0	NA	Intergenic	MIR|SINE|MIR	-1309	NR_073189	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
165846	chr3	105856171	105856330	+	0	NA	intron (NM_001321811, intron 2 of 16)	AluSx1|SINE|Alu	11341	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
50676	chr12	48850771	48852800	+	0	NA	intron (NM_004818, intron 1 of 16)	L2c|LINE|L2	378	NM_004818	9416		NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
163105	chr3	50115101	50115650	+	0	NA	TTS (NR_135301)	TTS (NR_135301)	-14387	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
159252	chr3	12931071	12931230	+	0	NA	intron (NM_014869, intron 3 of 13)	intron (NM_014869, intron 3 of 13)	36580	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
32784	chr10	104580801	104581100	+	0	NA	Intergenic	Intergenic	-60340	NM_014978	22986		NM_014978	ENSG00000156395	SORCS3	SORCS	sortilin related VPS10 domain containing receptor 3	protein-coding
99142	chr17	49338721	49339600	+	0	NA	intron (NR_135579, intron 1 of 7)	intron (NR_135579, intron 1 of 7)	-22005	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
27688	chr10	33127821	33128080	+	0	NA	Intergenic	(CTCCC)n|Simple_repeat|Simple_repeat	-11143	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
48275	chr12	8696351	8696450	+	0	NA	promoter-TSS (NM_001352268)	promoter-TSS (NM_001352268)	-783	NM_001352268	57494		NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding
61893	chr13	77316301	77316750	+	0	NA	intron (NM_015057, intron 1 of 82)	LTR16|LTR|ERVL	10569	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
216413	chr8	18912201	18912400	+	0	NA	intron (NM_015310, intron 2 of 15)	intron (NM_015310, intron 2 of 15)	-25243	NM_001362819	23362		NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
61922	chr13	77918901	77919500	+	0	NA	promoter-TSS (NM_001122659)	promoter-TSS (NM_001122659)	-369	NM_001122659	1910		NM_000115	ENSG00000136160	EDNRB	ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A	endothelin receptor type B	protein-coding
176524	chr4	95290701	95290900	+	0	NA	intron (NM_003728, intron 3 of 15)	intron (NM_003728, intron 3 of 15)	199309	NM_001256794	658		NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMD3|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
232181	chr9	134181401	134181950	+	0	NA	Intergenic	Intergenic	-17111	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
190966	chr6	2952571	2953000	+	0	NA	intron (NM_001271823, intron 5 of 6)	intron (NM_001271823, intron 5 of 6)	9345	NM_001271825	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
103421	chr17	78241421	78241780	+	0	NA	TTS (NM_001204211)	TTS (NM_001204211)	-6716	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
107200	chr18	36064171	36064330	+	0	NA	intron (NM_001303411, intron 1 of 7)	LTR12D|LTR|ERV1	3309	NM_001303411	55197		NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
185333	chr5	126809851	126810300	+	0	NA	intron (NR_134488, intron 3 of 11)	intron (NR_134488, intron 3 of 11)	32939	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
157404	chr22	44863521	44863980	+	0	NA	TTS (NM_001017526)	TTS (NM_001017526)	111175	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
130719	chr2	86744121	86744380	+	0	NA	intron (NM_022780, intron 2 of 8)	intron (NM_022780, intron 2 of 8)	-23128	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
62431	chr13	99312301	99312850	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-5176	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
200717	chr6	137559621	137560300	+	0	NA	Intergenic	L1PB1|LINE|L1	-65566	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
51910	chr12	53675471	53677100	+	0	NA	promoter-TSS (NM_001330269)	promoter-TSS (NM_001330269)	45	NM_001369755	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
48755	chr12	10981721	10983000	+	0	NA	intron (NM_001291314, intron 2 of 6).3	ERVL-E-int|LTR|ERVL	4552	NM_176890	259296		NM_176890	ENSG00000212126	TAS2R50	T2R50|T2R51|TAS2R51	taste 2 receptor member 50	protein-coding
236738	chrX	78141001	78141200	+	0	NA	Intergenic	Intergenic	-1450	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
31143	chr10	89793571	89793900	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-35758	NR_038382	643529		NR_038382	ENSG00000232229	LINC00865	-	long intergenic non-protein coding RNA 865	ncRNA
197911	chr6	89408451	89408750	+	0	NA	intron (NM_021244, intron 1 of 6)	intron (NM_021244, intron 1 of 6)	3673	NM_021244	58528		NM_021244	ENSG00000025039	RRAGD	HOMG7|RAGD|bA11D8.2.1	Ras related GTP binding D	protein-coding
134711	chr2	144508071	144508980	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-11089	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
208210	chr7	65216421	65216930	+	0	NA	intron (NR_146906, intron 15 of 17)	intron (NR_146906, intron 15 of 17)	75645	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
218494	chr8	52407771	52407930	+	0	NA	3' UTR (NM_001352880, exon 3 of 3)	3' UTR (NM_001352880, exon 3 of 3)	1906	NM_001352884	9705		NM_014682	ENSG00000147488	ST18	NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387	ST18 C2H2C-type zinc finger transcription factor	protein-coding
109199	chr19	407871	408030	+	0	NA	exon (NM_001136263, exon 2 of 2)	exon (NM_001136263, exon 2 of 2)	1197	NM_001136263	126567		NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium dependent domain containing 4C	protein-coding
57802	chr12	123115451	123116150	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	-10284	NM_001384660	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
239197	chrY	12911701	12912000	+	0	NA	exon (NM_001122665, exon 5 of 18)	exon (NM_001122665, exon 5 of 18)	6145	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
40084	chr11	62784071	62784580	+	0	NA	intron (NM_006473, intron 9 of 10)	AluY|SINE|Alu	-3077	NM_001363601	374395		NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
156385	chr22	41101221	41101750	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluY|SINE|Alu	8893	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
126049	chr2	25513601	25514080	+	0	NA	intron (NM_001351381, intron 8 of 18)	intron (NM_001351381, intron 8 of 18)	136382	NM_001256308	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
25290	chr10	6171951	6172330	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-19878	NR_039698	100628560		NR_039698	ENSG00000283634	MIR3155B	hsa-mir-3155b	microRNA 3155b	ncRNA
98079	chr17	45577551	45577850	+	0	NA	Intergenic	L1MB7|LINE|L1	24162	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
4224	chr1	19472301	19473380	+	0	NA	intron (NM_001206541, intron 1 of 8)	AluY|SINE|Alu	11455	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
214962	chr7	151863101	151863680	+	0	NA	intron (NM_016203, intron 1 of 15)	LTR16A|LTR|ERVL	-13652	NR_038926	100505483		NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	ncRNA
160778	chr3	32902821	32903530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-48469	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
182172	chr5	56686101	56687030	+	0	NA	Intergenic	Intergenic	-80309	NR_161255	101928448		NM_001287053		C5orf67	-	chromosome 5 putative open reading frame 67	ncRNA
58713	chr12	132571951	132572400	+	0	NA	intron (NM_001382739, intron 9 of 18)	CpG	-9822	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
7161	chr1	32244071	32244500	+	0	NA	Intergenic	AluY|SINE|Alu	-2575	NR_026850	339483		NM_178546	ENSG00000291132	MTMR9LP	MTMR9L	myotubularin related protein 9 like, pseudogene	pseudo
78183	chr15	90554071	90554630	+	0	NA	intron (NM_001042574, intron 2 of 14)	AluSx|SINE|Alu	24427	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
9909	chr1	54405701	54407200	+	0	NA	promoter-TSS (NM_001009955)	promoter-TSS (NM_001009955)	-56	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
109042	chr18	79750071	79750430	+	0	NA	intron (NM_004715, intron 12 of 12)	AluJb|SINE|Alu	68820	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
90030	chr16	89900121	89900730	+	0	NA	intron (NM_014972, intron 11 of 17)	intron (NM_014972, intron 11 of 17)	-18437	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
1791	chr1	6141671	6141930	+	0	NA	intron (NM_015557, intron 15 of 41)	MLT1C|LTR|ERVL-MaLR	38521	NM_015557	26038		NM_015557	ENSG00000116254	CHD5	CHD-5|PMNDS	chromodomain helicase DNA binding protein 5	protein-coding
89704	chr16	89402801	89404100	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-27468	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
25265	chr10	6091351	6092280	+	0	NA	intron (NM_001145547, intron 1 of 11)	intron (NM_001145547, intron 1 of 11)	2469	NM_001145547	84991		NM_032905	ENSG00000134453	RBM17	SPF45	RNA binding motif protein 17	protein-coding
17497	chr1	156731851	156732530	+	0	NA	intron (NM_015997, intron 2 of 7)	intron (NM_015997, intron 2 of 7)	-3424	NM_001370150	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
141407	chr2	240916471	240916630	+	0	NA	intron (NM_001351305, intron 1 of 31)	intron (NM_001351305, intron 1 of 31)	10214	NM_001351305	728763		NM_001351305	ENSG00000226321	CROCC2	-	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding
18356	chr1	161228421	161228680	+	0	NA	intron (NM_001286373, intron 7 of 8)	intron (NM_001286373, intron 7 of 8)	1364	NR_049819	100847090		NR_049819	ENSG00000284035	MIR5187	mir-5187	microRNA 5187	ncRNA
201280	chr6	144287151	144287480	+	0	NA	Intergenic	Intergenic	-4422	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
174878	chr4	48746421	48746980	+	0	NA	intron (NM_015030, intron 1 of 63)	MLT1G|LTR|ERVL-MaLR	33579	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
84761	chr16	30979421	30979900	+	0	NA	exon (NM_014712, exon 14 of 19)	exon (NM_014712, exon 14 of 19)	-5547	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
126192	chr2	26768951	26770030	+	0	NA	intron (NM_017877, intron 1 of 5)	intron (NM_017877, intron 1 of 5)	5206	NM_017877	54978		NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
157096	chr22	42628221	42628900	+	0	NA	intron (NM_001129819, intron 4 of 8)	intron (NM_001129819, intron 4 of 8)	12041	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
199821	chr6	127606121	127606380	+	0	NA	Intergenic	Intergenic	29076	NM_001010905	352999		NM_001010905	ENSG00000184530	C6orf58	LEG1	chromosome 6 open reading frame 58	protein-coding
122757	chr19	50118551	50118950	+	0	NA	promoter-TSS (NR_024214).8	promoter-TSS (NR_024214).8	-910	NR_024224	100169953		NR_024224		SNAR-A7	-	small NF90 (ILF3) associated RNA A7	snRNA
117016	chr19	18913901	18914300	+	0	NA	intron (NM_007263, intron 1 of 9)	intron (NM_007263, intron 1 of 9)	5287	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
78728	chr15	98669001	98669400	+	0	NA	intron (NM_000875, intron 1 of 20)	intron (NM_000875, intron 1 of 20)	-17979	NR_126453	104472848		NR_126453		IRAIN	IGF1R-AS|IGF1RAS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
6216	chr1	27488971	27489600	+	0	NA	intron (NM_006990, intron 1 of 8)	(CA)n|Simple_repeat|Simple_repeat	882	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
226942	chr9	79623701	79624780	+	0	NA	intron (NM_001351563, intron 5 of 17)	intron (NM_001351563, intron 5 of 17)	51063	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
38870	chr11	47345871	47346730	+	0	NA	exon (NM_000256, exon 12 of 34)	exon (NM_000256, exon 12 of 34)	6402	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
114069	chr19	11091401	11093280	+	0	NA	intron (NM_001195800, intron 1 of 15)	intron (NM_001195800, intron 1 of 15)	-2681	NR_163945	115271120		NR_163945		LDLR-AS1	-	LDLR antisense RNA 1	ncRNA
140199	chr2	231684221	231684700	+	0	NA	Intergenic	Intergenic	-24065	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
76309	chr15	74376221	74376650	+	0	NA	Intergenic	Intergenic	-2647	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
207830	chr7	50330621	50331000	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	11762	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
155137	chr22	37654101	37654700	+	0	NA	intron (NM_001350055, intron 17 of 17)	AluSx1|SINE|Alu	3977	NR_109952	101927051		NR_109952	ENSG00000233360	PDXP-DT	-	PDXP divergent transcript	ncRNA
44984	chr11	116929871	116930770	+	0	NA	intron (NM_001366686, intron 3 of 24)	intron (NM_001366686, intron 3 of 24)	-92370	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
106435	chr18	13608021	13608530	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-2839	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
201001	chr6	139764771	139764930	+	0	NA	Intergenic	Intergenic	-6223	NR_038399	100132735		NR_038399	ENSG00000231426	FILNC1	-	FOXO induced long non-coding RNA 1	ncRNA
139947	chr2	230847651	230848300	+	0	NA	Intergenic	Intergenic	-16210	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
111500	chr19	3976601	3977100	+	0	NA	intron (NM_001961, intron 14 of 14)	intron (NM_001961, intron 14 of 14)	5722	NR_002602	26812		NR_002602	ENSG00000206775	SNORD37	RNU37|U37	small nucleolar RNA, C/D box 37	snoRNA
209949	chr7	92634271	92634530	+	0	NA	intron (NM_001145306, intron 5 of 7)	L1M5|LINE|L1	-44010	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
55335	chr12	103954221	103954480	+	0	NA	intron (NM_001135570, intron 2 of 2)	MSTB|LTR|ERVL-MaLR	2865	NM_001135570	728568		NM_001135570	ENSG00000204954	UQCC6	BR|BRAWNIN|C12orf73	ubiquinol-cytochrome c reductase complex assembly factor 6	protein-coding
30839	chr10	86450001	86450200	+	0	NA	intron (NM_015045, intron 15 of 18)	L1MD2|LINE|L1	71684	NM_001318328	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
179174	chr4	173013321	173013630	+	0	NA	intron (NM_001034845, intron 11 of 12)	intron (NM_001034845, intron 11 of 12)	-155336	NM_001375599	51809		NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
166993	chr3	125920051	125920350	+	0	NA	intron (NR_024251, intron 2 of 4)	intron (NR_024251, intron 2 of 4)	3599	NR_024250	100125556		NR_024250	ENSG00000291071	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
193298	chr6	30078151	30078250	+	0	NA	Intergenic	L2a|LINE|L2	-2349	NM_025236	80352		NM_025236	ENSG00000204618	RNF39	FAP216|HZF|HZFW|LIRF	ring finger protein 39	protein-coding
204681	chr7	5500021	5500700	+	0	NA	intron (NM_024963, intron 3 of 4)	CpG	-4443	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
123533	chr19	54326621	54327530	+	0	NA	Intergenic	L1P4a|LINE|L1	12087	NM_012276	23547		NM_012276	ENSG00000239961	LILRA4	CD85g|ILT7	leukocyte immunoglobulin like receptor A4	protein-coding
138333	chr2	203815021	203815680	+	0	NA	Intergenic	Intergenic	-52421	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
210103	chr7	97871751	97872700	+	0	NA	promoter-TSS (NM_001178077)	promoter-TSS (NM_001178077)	-60	NM_133436	440		NM_001673	ENSG00000070669	ASNS	ASNSD|TS11	asparagine synthetase (glutamine-hydrolyzing)	protein-coding
140042	chr2	231228371	231228530	+	0	NA	intron (NR_148040, intron 7 of 21)	MLT1G3|LTR|ERVL-MaLR	29819	NM_001352755	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
94930	chr17	32006721	32008290	+	0	NA	5' UTR (NM_001321350, exon 1 of 15)	5' UTR (NM_001321350, exon 1 of 15)	122	NM_001321350	114659		NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
190612	chr5	181180521	181181100	+	0	NA	Intergenic	Intergenic	11098	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
164440	chr3	59411071	59411430	+	0	NA	Intergenic	Intergenic	247247	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
201334	chr6	144470571	144470930	+	0	NA	intron (NM_007124, intron 22 of 73)	SVA_B|Retroposon|SVA	65095	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
63285	chr13	113971271	113971500	+	0	NA	intron (NM_001365455, intron 1 of 6)	intron (NM_001365455, intron 1 of 6)	2691	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
212780	chr7	130058201	130059130	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-7214	NM_001282191	51530		NM_016478	ENSG00000091732	ZC3HC1	HSPC216|NIPA	zinc finger C3HC-type containing 1	protein-coding
140924	chr2	237719121	237719380	+	0	NA	intron (NM_001137550, intron 4 of 23)	intron (NM_001137550, intron 4 of 23)	27045	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
216295	chr8	12596571	12597150	+	0	NA	intron (NR_047662, intron 6 of 8)	intron (NR_047662, intron 6 of 8)	68751	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
179402	chr4	183798901	183799100	+	0	NA	intron (NR_132761, intron 1 of 2)	intron (NR_132761, intron 1 of 2)	978	NR_132761	56977		NM_020225	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
187238	chr5	141354851	141355280	+	0	NA	promoter-TSS (NM_032053)	promoter-TSS (NM_032053)	44	NM_018917	56111		NM_018917	ENSG00000262576	PCDHGA4	PCDH-GAMMA-A4	protocadherin gamma subfamily A, 4	protein-coding
162477	chr3	48553821	48554550	+	0	NA	intron (NM_001317136, intron 1 of 13)	intron (NM_001317136, intron 1 of 13)	2618	NM_001317135	5210		NM_004567	ENSG00000114268	PFKFB4	-	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding
157068	chr22	42597251	42597550	+	0	NA	intron (NM_001278657, intron 4 of 8)	intron (NM_001278657, intron 4 of 8)	-15389	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
107814	chr18	51384571	51384730	+	0	NA	Intergenic	Intergenic	-7392	NR_040074	100287225		NR_040074	ENSG00000227115	LINC01630	-	long intergenic non-protein coding RNA 1630	ncRNA
108380	chr18	69559501	69559700	+	0	NA	intron (NM_152721, intron 1 of 7)	intron (NM_152721, intron 1 of 7)	89669	NR_134579	105372179		NR_134579	ENSG00000293054	LOC105372179	-	uncharacterized LOC105372179	ncRNA
114363	chr19	12365051	12366150	+	0	NA	promoter-TSS (NM_030824)	promoter-TSS (NM_030824)	83	NM_001363774	79973		NM_030824	ENSG00000198342	ZNF442	-	zinc finger protein 442	protein-coding
24574	chr1	245042651	245043030	+	0	NA	intron (NM_001290327, intron 3 of 7)	intron (NM_001290327, intron 3 of 7)	-71971	NR_111907	101928068		NR_111907		LOC101928068	-	uncharacterized LOC101928068	ncRNA
142195	chr20	2982151	2982730	+	0	NA	intron (NM_001385320, intron 7 of 21)	intron (NM_001385320, intron 7 of 21)	-61182	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
39996	chr11	62631271	62631630	+	0	NA	intron (NM_198334, intron 9 of 23)	L2a|LINE|L2	8768	NM_001329224	23193		NM_014610	ENSG00000089597	GANAB	G2AN|GIIA|GIIalpha|GLUII|PKD3	glucosidase II alpha subunit	protein-coding
10412	chr1	65262671	65262830	+	0	NA	Intergenic	AluJr|SINE|Alu	-1944	NM_001256865	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
101310	chr17	66509471	66510030	+	0	NA	intron (NM_002737, intron 3 of 16)	MLT1H2|LTR|ERVL-MaLR	-92896	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
193266	chr6	29959421	29959680	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	-15565	NR_028032	10255		NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9	ncRNA
86184	chr16	57889271	57890430	+	0	NA	intron (NM_001297, intron 31 of 32)	MIRc|SINE|MIR	79213	NM_001278081	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
35850	chr11	2315951	2316330	+	0	NA	intron (NM_139022, intron 6 of 9)	intron (NM_139022, intron 6 of 9)	-13000	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
119208	chr19	39448271	39448730	+	0	NA	intron (NM_001111020, intron 2 of 29)	MamSINE1|SINE|tRNA-RTE	2852	NM_003169	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
7810	chr1	36280951	36281250	+	0	NA	intron (NM_001321471, intron 3 of 12)	AluSq2|SINE|Alu	-25268	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
237883	chrX	131251171	131251330	+	0	NA	Intergenic	L1PA2|LINE|L1	37811	NM_001170963	3547		NM_001555	ENSG00000147255	IGSF1	CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120	immunoglobulin superfamily member 1	protein-coding
165879	chr3	106175871	106176030	+	0	NA	Intergenic	AluSx|SINE|Alu	-306549	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
221856	chr8	128283651	128283750	+	0	NA	Intergenic	L1ME3A|LINE|L1	133584	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
138039	chr2	201362051	201362350	+	0	NA	Intergenic	Tigger8|DNA|TcMar-Tigger	-4802	NM_139163	130540		NM_139163	ENSG00000155749	FLACC1	ALS2CR12	flagellum associated containing coiled-coil domains 1	protein-coding
177254	chr4	109298671	109298830	+	0	NA	intron (NM_198721, intron 3 of 36)	intron (NM_198721, intron 3 of 36)	3908	NM_032518	84570		NM_032518	ENSG00000188517	COL25A1	AMY|CFEOM5|CLAC|CLAC-P|CLACP	collagen type XXV alpha 1 chain	protein-coding
223667	chr8	144392171	144393080	+	0	NA	TTS (NM_013291)	TTS (NM_013291)	1605	NR_030635	100126351		NR_030635	ENSG00000284310	MIR939	MIRN939|hsa-mir-939|mir-939	microRNA 939	ncRNA
208037	chr7	55887021	55888180	+	0	NA	5' UTR (NM_001366796, exon 1 of 7)	5' UTR (NM_001366796, exon 1 of 7)	144	NM_182633	349075		NM_182633	ENSG00000178665	ZNF713	-	zinc finger protein 713	protein-coding
113559	chr19	10249221	10249480	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2614	NM_146387	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
70661	chr14	103059201	103060100	+	0	NA	Intergenic	Intergenic	-2101	NM_006035	9578		NM_006035	ENSG00000198752	CDC42BPB	CHOCNS|MRCKB	CDC42 binding protein kinase beta	protein-coding
73530	chr15	43819751	43820050	+	0	NA	intron (NM_005926, intron 1 of 8)	AluYk3|SINE|Alu	4790	NM_005926	4236		NM_005926	ENSG00000140259	MFAP1	AMP	microfibril associated protein 1	protein-coding
228748	chr9	110050801	110051250	+	0	NA	intron (NM_001198656, intron 1 of 4)	intron (NM_001198656, intron 1 of 4)	2427	NM_001198656	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
226024	chr9	42236201	42236400	+	0	NA	Intergenic	Intergenic	37438	NR_126166	100996582		NR_126166		FAM74A7	-	family with sequence similarity 74 member A7	ncRNA
231233	chr9	129972221	129972650	+	0	NA	intron (NM_001363755, intron 4 of 15)	AluSx1|SINE|Alu	70754	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
188818	chr5	158958301	158958530	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	139541	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
59319	chr13	24304421	24304780	+	0	NA	3' UTR (NM_001286793, exon 9 of 9)	3' UTR (NM_001286793, exon 9 of 9)	-2566	NM_001303138	338872		NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and TNF related 9	protein-coding
18891	chr1	168229851	168230150	+	0	NA	intron (NM_199344, intron 1 of 7)	intron (NM_199344, intron 1 of 7)	3996	NM_199344	375035		NM_199344	ENSG00000213064	SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
69256	chr14	93024151	93024450	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	12674	NM_001363707	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
109924	chr19	1301571	1302130	+	0	NA	TTS (NM_001405)	TTS (NM_001405)	15977	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
5854	chr1	26727301	26727830	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	31550	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
234185	chrX	11824821	11825280	+	0	NA	intron (NM_001368395, intron 1 of 18)	intron (NM_001368395, intron 1 of 18)	2611	NM_001368398	9758		NM_014728	ENSG00000169933	FRMPD4	MRX104|PDZD10|PDZK10|XLID104	FERM and PDZ domain containing 4	protein-coding
227473	chr9	91131171	91131880	+	0	NA	intron (NR_135306, intron 2 of 2)	intron (NR_135306, intron 2 of 2)	12463	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
126343	chr2	27380001	27381950	+	0	NA	promoter-TSS (NM_001201459)	promoter-TSS (NM_001201459)	-241	NM_144631	130557		NM_144631	ENSG00000163795	ZNF513	HMFT0656|RP58|Zfp513	zinc finger protein 513	protein-coding
18405	chr1	161427871	161428380	+	0	NA	Intergenic	tRNA-Asn-AAC|tRNA|tRNA	-60249	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
158430	chr22	50576971	50577130	+	0	NA	intron (NR_027928, intron 13 of 29)	intron (NR_027928, intron 13 of 29)	967	NM_001145137	1375		NM_004377	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B	protein-coding
182404	chr5	61336751	61336850	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	4542	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
108234	chr18	63205651	63206200	+	0	NA	intron (NM_000633, intron 2 of 2)	L3b|LINE|CR1	113844	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
14349	chr1	143988871	143989230	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-15531	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
120458	chr19	44657171	44657780	+	0	NA	intron (NM_001135768, intron 4 of 7)	L2a|LINE|L2	-3743	NR_039756	100616355		NR_039756	ENSG00000283673	MIR4531	-	microRNA 4531	ncRNA
15376	chr1	150152951	150153730	+	0	NA	intron (NM_016274, intron 2 of 5)	AluJr|SINE|Alu	2754	NM_001304723	51177		NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding
66278	chr14	61376971	61377330	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	55707	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
196120	chr6	42386771	42387850	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	64741	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
126227	chr2	27032351	27034000	+	0	NA	intron (NM_017727, intron 1 of 16)	CpG	210	NM_001083590	54867		NM_017727	ENSG00000119777	TMEM214	-	transmembrane protein 214	protein-coding
137515	chr2	197190051	197190350	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	-7791	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
18198	chr1	160860751	160861250	+	0	NA	intron (NM_001166664, intron 1 of 7)	intron (NM_001166664, intron 1 of 7)	1887	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
45775	chr11	119269921	119270180	+	0	NA	intron (NM_005188, intron 2 of 15)	intron (NM_005188, intron 2 of 15)	42962	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
181888	chr5	54527001	54527200	+	0	NA	intron (NM_001145427, intron 1 of 1)	L2a|LINE|L2	9341	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
95059	chr17	32672551	32672850	+	0	NA	intron (NM_015194, intron 16 of 21)	AluSx|SINE|Alu	185707	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
91051	chr17	2929751	2930300	+	0	NA	intron (NM_001100398, intron 3 of 23)	intron (NM_001100398, intron 3 of 23)	35870	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
239222	chrY	12937221	12937700	+	0	NA	Intergenic	AluSx|SINE|Alu	31755	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
209588	chr7	77535221	77535630	+	0	NA	Intergenic	Intergenic	-1870	NM_002835	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
148431	chr20	63966801	63967000	+	0	NA	exon (NM_020713, exon 4 of 17)	exon (NM_020713, exon 4 of 17)	3030	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
45614	chr11	118908271	118908450	+	0	NA	non-coding (NR_165445, exon 2 of 7)	non-coding (NR_165445, exon 2 of 7)	2182	NM_182557	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
238932	chrX	154748551	154749230	+	0	NA	intron (NR_104114, intron 1 of 8)	intron (NR_104114, intron 1 of 8)	2187	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
126156	chr2	26246651	26247030	+	0	NA	intron (NM_001281513, intron 1 of 16)	intron (NM_001281513, intron 1 of 16)	1901	NM_001281513	3032		NM_000183	ENSG00000138029	HADHB	ECHB|MSTP029|MTPB|MTPD|MTPD2|TP-BETA	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta	protein-coding
111542	chr19	4034221	4034950	+	0	NA	intron (NM_015897, intron 9 of 10)	intron (NM_015897, intron 9 of 10)	26849	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
39293	chr11	58575221	58576150	+	0	NA	intron (NM_001143995, intron 1 of 8)	intron (NM_001143995, intron 1 of 8)	171	NM_004811	9404		NM_004811	ENSG00000110031	LPXN	LDPL	leupaxin	protein-coding
133145	chr2	112679151	112679650	+	0	NA	Intergenic	FRAM|SINE|Alu	33461	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
226650	chr9	74770921	74771480	+	0	NA	intron (NM_001177311, intron 25 of 38)	L2a|LINE|L2	116147	NM_001177311	140803		NM_017662	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	transient receptor potential cation channel subfamily M member 6	protein-coding
135806	chr2	169933201	169933400	+	0	NA	intron (NM_172070, intron 19 of 38)	intron (NM_172070, intron 19 of 38)	105846	NM_172070	130507		NM_172070	ENSG00000144357	UBR3	ZNF650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding
109281	chr19	546951	547450	+	0	NA	intron (NM_001258351, intron 1 of 4)	intron (NM_001258351, intron 1 of 4)	3147	NM_001258351	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
127746	chr2	43609071	43609800	+	0	NA	Intergenic	Intergenic	-13389	NM_001345923	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
61348	chr13	50908371	50908550	+	0	NA	intron (NR_046552, intron 1 of 2)	intron (NR_046552, intron 1 of 2)	-1218	NM_001142279	79621		NM_024570	ENSG00000136104	RNASEH2B	AGS2|DLEU8	ribonuclease H2 subunit B	protein-coding
140000	chr2	230950671	230950830	+	0	NA	Intergenic	MER21A|LTR|ERVL	-25508	NM_005683	9290		NM_005683	ENSG00000135898	GPR55	LPIR1	G protein-coupled receptor 55	protein-coding
136061	chr2	172736151	172736480	+	0	NA	promoter-TSS (NR_026995)	promoter-TSS (NR_026995)	-109	NR_026995	91149		NR_026995	ENSG00000228016	RAPGEF4-AS1	-	RAPGEF4 antisense RNA 1	ncRNA
36574	chr11	6663751	6664350	+	0	NA	Intergenic	Intergenic	-8241	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
164402	chr3	58464851	58465250	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-27046	NM_001128214	200845		NM_153331	ENSG00000168301	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
105198	chr17	82313901	82314680	+	0	NA	TTS (NM_006137)	TTS (NM_006137)	3318	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
224374	chr9	7967401	7967700	+	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	-167772	NM_001318059	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
197043	chr6	53360101	53360830	+	0	NA	Intergenic	MIRb|SINE|MIR	-11286	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
120462	chr19	44684901	44685530	+	0	NA	TTS (NM_020219)	TTS (NM_020219)	13763	NM_001127893	56971		NM_020219	ENSG00000186567	CEACAM19	CEACM19|CEAL1	CEA cell adhesion molecule 19	protein-coding
35197	chr11	802571	802730	+	0	NA	intron (NM_145886, intron 4 of 15)	intron (NM_145886, intron 4 of 15)	2581	NM_145886	55367		NM_018494	ENSG00000177595	PIDD1	LRDD|MRT75|PIDD	p53-induced death domain protein 1	protein-coding
53941	chr12	71794501	71794700	+	0	NA	3' UTR (NM_014999, exon 7 of 7)	3' UTR (NM_014999, exon 7 of 7)	39737	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
226900	chr9	78821351	78821450	+	0	NA	Intergenic	Intergenic	324266	NR_109771	101927450		NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
150001	chr21	37001301	37001500	+	0	NA	Intergenic	Intergenic	-4750	NM_001317768	53820		NM_018962	ENSG00000183145	RIPPLY3	DSCR6	ripply transcriptional repressor 3	protein-coding
202406	chr6	157872401	157872600	+	0	NA	intron (NM_016224, intron 2 of 17)	MLT1H|LTR|ERVL-MaLR	49254	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
147613	chr20	62132421	62133080	+	0	NA	intron (NM_144703, intron 7 of 8)	L2|LINE|L2	10275	NM_144703	149986		NM_014054	ENSG00000149657	LSM14B	C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3	LSM family member 14B	protein-coding
149484	chr21	32266251	32266350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	12749	NM_018944	54069		NM_018944	ENSG00000159055	MIS18A	B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha	MIS18 kinetochore protein A	protein-coding
150334	chr21	42089051	42089830	+	0	NA	intron (NM_173568, intron 5 of 21)	MER90a|LTR|ERV1	18123	NM_001004416	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
116687	chr19	18420201	18421230	+	0	NA	intron (NM_032627, intron 1 of 17)	AluSc|SINE|Alu	1317	NM_032627	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
79545	chr16	903321	903780	+	0	NA	intron (NM_001352017, intron 5 of 11)	intron (NM_001352017, intron 5 of 11)	-17483	NR_110946	101929387		NR_110945	ENSG00000260439	LMF1-AS1	LA16c-366D3.1	LMF1 antisense RNA 1	ncRNA
113777	chr19	10542451	10542780	+	0	NA	Intergenic	AluJo|SINE|Alu	-1289	NR_104025	84971		NM_032885	ENSG00000130734	ATG4D	APG4-D|APG4D|AUTL4|HsAPG4D	autophagy related 4D cysteine peptidase	protein-coding
61702	chr13	74069271	74069450	+	0	NA	intron (NM_007249, intron 1 of 7)	L2a|LINE|L2	64569	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
140281	chr2	232335251	232335850	+	0	NA	intron (NR_046477, intron 18 of 18)	intron (NR_046477, intron 18 of 18)	-43201	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
116719	chr19	18452601	18453000	+	0	NA	intron (NM_006532, intron 6 of 11)	intron (NM_006532, intron 6 of 11)	-14667	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
156799	chr22	41916951	41917250	+	0	NA	Intergenic	Intergenic	-2005	NM_001207020	440829		NM_001207020	ENSG00000234965	SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
13244	chr1	112699451	112699830	+	0	NA	intron (NM_001286072, intron 18 of 21)	intron (NM_001286072, intron 18 of 21)	7416	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
66039	chr14	58294921	58295880	+	0	NA	intron (NR_029434, intron 1 of 4)	HSMAR1|DNA|TcMar-Mariner	2737	NR_029435	379025		NR_029434	ENSG00000257621	PSMA3-AS1	-	PSMA3 antisense RNA 1	ncRNA
146469	chr20	49712571	49714530	+	0	NA	intron (NM_004776, intron 1 of 8)	CpG	328	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
229554	chr9	122930851	122932000	+	0	NA	promoter-TSS (NM_001304364)	promoter-TSS (NM_001304364)	87	NM_001304363	57684		NM_020924	ENSG00000171448	ZBTB26	ZNF481|bioref	zinc finger and BTB domain containing 26	protein-coding
59105	chr13	21148651	21148980	+	0	NA	3' UTR (NM_005870, exon 4 of 4)	3' UTR (NM_005870, exon 4 of 4)	8269	NM_001366643	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
109000	chr18	79698921	79699430	+	0	NA	intron (NM_001318511, intron 4 of 11)	intron (NM_001318511, intron 4 of 11)	17745	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
219501	chr8	73965301	73966330	+	0	NA	intron (NM_001204858, intron 1 of 4)	intron (NM_001204858, intron 1 of 4)	6093	NM_001204861	6921		NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
230413	chr9	128121021	128121900	+	0	NA	intron (NM_001256335, intron 7 of 7)	intron (NM_001256335, intron 7 of 7)	-2726	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
69953	chr14	99681721	99681980	+	0	NA	Intergenic	MER50|LTR|ERV1	-2448	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
53778	chr12	68810051	68811180	+	0	NA	intron (NM_002392, intron 2 of 10)	AluY|SINE|Alu	1591	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
82353	chr16	15963371	15964100	+	0	NA	intron (NM_004996, intron 1 of 30)	THE1C-int|LTR|ERVL-MaLR	14119	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
83833	chr16	28861151	28861450	+	0	NA	intron (NM_001308293, intron 1 of 10)	AluSg|SINE|Alu	-2457	NM_001145797	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
205948	chr7	26101321	26101880	+	0	NA	Intergenic	Intergenic	-50598	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
20584	chr1	198750721	198751000	+	0	NA	intron (NM_002838, intron 29 of 32)	intron (NM_002838, intron 29 of 32)	108122	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
38666	chr11	46389401	46390400	+	0	NA	intron (NM_001366692, intron 1 of 1)	CpG	1768	NM_001366692	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
147714	chr20	62366721	62367380	+	0	NA	exon (NM_005560, exon 1 of 80)	exon (NM_005560, exon 1 of 80)	262	NM_005560	3911		NM_005560	ENSG00000130702	LAMA5	BBDS2|NPHS26	laminin subunit alpha 5	protein-coding
100484	chr17	61583371	61583530	+	0	NA	Intergenic	Intergenic	7769	NM_199290	342538		NM_199290	ENSG00000253506	NACA2	ANAC|NACAL	nascent polypeptide associated complex subunit alpha 2	protein-coding
117464	chr19	19707471	19708000	+	0	NA	Intergenic	Intergenic	25377	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
58631	chr12	132502471	132503250	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	-2546	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
150280	chr21	41876471	41877300	+	0	NA	intron (NM_022115, intron 3 of 30)	intron (NM_022115, intron 3 of 30)	2459	NR_104257	63977		NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
2243	chr1	8876451	8877400	+	0	NA	intron (NM_001428, intron 1 of 11)	AluSq2|SINE|Alu	1761	NM_001353346	2023		NM_001428	ENSG00000074800	ENO1	ENO1-IT1|ENO1L1|HEL-S-17|MPB1|NNE|PPH	enolase 1	protein-coding
120575	chr19	44996251	44997100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4789	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
86699	chr16	67535421	67535880	+	0	NA	intron (NM_001193523, intron 1 of 21)	L2a|LINE|L2	-1812	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
40627	chr11	64710651	64711780	+	0	NA	intron (NM_015080, intron 2 of 22)	intron (NM_015080, intron 2 of 22)	11982	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
233995	chrX	2927471	2927630	+	0	NA	intron (NM_009589, intron 1 of 6)	AluSq2|SINE|Alu	1789	NM_009589	414		NM_001669	ENSG00000006756	ARSD	ASD	arylsulfatase D	protein-coding
157052	chr22	42580271	42583000	+	0	NA	intron (NR_002184, intron 1 of 6)	intron (NR_002184, intron 1 of 6)	376	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
59498	chr13	26719671	26719850	+	0	NA	Intergenic	Intergenic	41026	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
81436	chr16	8862501	8863400	+	0	NA	intron (NM_001278260, intron 1 of 4)	intron (NM_001278260, intron 1 of 4)	-1140	NM_001278266	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
94101	chr17	27793271	27794030	+	0	NA	intron (NM_000625, intron 2 of 26)	CpG	6879	NM_000625	4843		NM_000625	ENSG00000007171	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2	protein-coding
98238	chr17	46162121	46162380	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	30532	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
99164	chr17	49390501	49391480	+	0	NA	Intergenic	Intergenic	23868	NM_001281496	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
209311	chr7	76050051	76050350	+	0	NA	intron (NM_001282404, intron 1 of 7)	AluSz|SINE|Alu	2094	NM_001282403	4191		NM_005918	ENSG00000146701	MDH2	DEE51|EIEE51|M-MDH|MDH|MGC:3559|MOR1	malate dehydrogenase 2	protein-coding
134622	chr2	144409721	144410180	+	0	NA	intron (NM_001171653, intron 3 of 8)	AluY|SINE|Alu	-76881	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
221892	chr8	128574401	128575030	+	0	NA	Intergenic	Intergenic	-10036	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
181336	chr5	40405451	40405550	+	0	NA	Intergenic	Intergenic	-274415	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
35029	chr11	563751	564480	+	0	NA	TTS (NM_001143994)	TTS (NM_001143994)	3145	NM_001143994	8045		NM_003475	ENSG00000099849	RASSF7	C11orf13|CFAP88|FAP88|HRAS1|HRC1	Ras association domain family member 7	protein-coding
31021	chr10	88826351	88826950	+	0	NA	intron (NM_144590, intron 3 of 5)	L2b|LINE|L2	23920	NM_001128215	340654		NM_001128215	ENSG00000173239	LIPM	LIPL3|bA304I5.1	lipase family member M	protein-coding
103641	chr17	78757751	78758200	+	0	NA	intron (NM_017456, intron 1 of 12)	L1M5|LINE|L1	-21073	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
169878	chr3	177361401	177361600	+	0	NA	Intergenic	Intergenic	67058	NR_047465	100820709		NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
98989	chr17	48740351	48741000	+	0	NA	Intergenic	Intergenic	-11925	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
115209	chr19	14479551	14481200	+	0	NA	exon (NM_005716, exon 6 of 9)	exon (NM_005716, exon 6 of 9)	-5021	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
16997	chr1	156005951	156006050	+	0	NA	Intergenic	AluSg|SINE|Alu	14951	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
40974	chr11	65367251	65367430	+	0	NA	Intergenic	LTR15|LTR|ERV1	12589	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
186599	chr5	138511771	138512330	+	0	NA	intron (NR_157090, intron 5 of 9)	AluJb|SINE|Alu	29661	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
72825	chr15	40123321	40123780	+	0	NA	Intergenic	AluY|SINE|Alu	-14671	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
94808	chr17	31307901	31308400	+	0	NA	intron (NM_006495, intron 1 of 1)	AluSz|SINE|Alu	5904	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
1641	chr1	3786471	3786630	+	0	NA	intron (NM_020710, intron 2 of 6)	intron (NM_020710, intron 2 of 6)	9948	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
122579	chr19	49686171	49686330	+	0	NA	intron (NM_001536, intron 9 of 10)	intron (NM_001536, intron 9 of 10)	-2435	NM_001101340	199800		NM_001101340	ENSG00000224420	ADM5	AM5|C19orf76	adrenomedullin 5 (putative)	protein-coding
50529	chr12	47883121	47883930	+	0	NA	intron (NM_000376, intron 1 of 9)	intron (NM_000376, intron 1 of 9)	21469	NM_001374661	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
27710	chr10	33249651	33249750	+	0	NA	intron (NM_001244973, intron 6 of 16)	intron (NM_001244973, intron 6 of 16)	84967	NM_001330068	8829		NM_003873	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
29853	chr10	72354001	72355800	+	0	NA	promoter-TSS (NM_017626)	promoter-TSS (NM_017626)	19	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
161843	chr3	45693541	45694980	+	0	NA	intron (NM_001319073, intron 2 of 20)	intron (NM_001319073, intron 2 of 20)	4864	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
184107	chr5	93915021	93915380	+	0	NA	intron (NR_028080, intron 4 of 8)	intron (NR_028080, intron 4 of 8)	-173600	NM_153216	134187		NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
76115	chr15	72513301	72514050	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	39345	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
211088	chr7	102488221	102488930	+	0	NA	exon (NM_001277335, exon 17 of 20)	exon (NM_001277335, exon 17 of 20)	-9653	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
56785	chr12	120191701	120191980	+	0	NA	intron (NM_006836, intron 1 of 57)	HAL1|LINE|L1	2875	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
42151	chr11	67713651	67714400	+	0	NA	Intergenic	Intergenic	-32801	NM_001031615	222		NM_000695	ENSG00000132746	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family member B2	protein-coding
214608	chr7	150688721	150689380	+	0	NA	intron (NM_015660, intron 2 of 2)	intron (NM_015660, intron 2 of 2)	3344	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
183471	chr5	79249751	79249850	+	0	NA	intron (NM_152405, intron 1 of 10)	intron (NM_152405, intron 1 of 10)	13669	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
95820	chr17	38751601	38753900	+	0	NA	promoter-TSS (NR_104194)	promoter-TSS (NR_104194)	9	NR_104195	5691		NM_002795	ENSG00000277791	PSMB3	HC10-II	proteasome 20S subunit beta 3	protein-coding
105166	chr17	82264351	82264950	+	0	NA	intron (NM_139062, intron 2 of 9)	intron (NM_139062, intron 2 of 9)	9050	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
82634	chr16	19067201	19068680	+	0	NA	promoter-TSS (NR_119382)	promoter-TSS (NR_119382)	33	NR_163449	10229		NM_016138	ENSG00000167186	COQ7	CAT5|CLK-1|CLK1|COQ10D8|HMNR9	coenzyme Q7, hydroxylase	protein-coding
205660	chr7	22855851	22856200	+	0	NA	promoter-TSS (NR_003075)	promoter-TSS (NR_003075)	-588	NR_003075	692210		NR_003075	ENSG00000221740	SNORD93	HBII-336	small nucleolar RNA, C/D box 93	snoRNA
118970	chr19	38862901	38863100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10653	NM_001005335	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
62094	chr13	94617401	94617830	+	0	NA	intron (NM_180989, intron 3 of 8)	intron (NM_180989, intron 3 of 8)	15758	NM_180989	160897		NM_180989	ENSG00000152749	GPR180	ITR	G protein-coupled receptor 180	protein-coding
44074	chr11	95631771	95631930	+	0	NA	Intergenic	L1PA2|LINE|L1	157932	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
179440	chr4	184408571	184408730	+	0	NA	intron (NM_002199, intron 5 of 8)	intron (NM_002199, intron 5 of 8)	-26344	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
218018	chr8	38527901	38528300	+	0	NA	intron (NR_167676, intron 1 of 2)	intron (NR_167676, intron 1 of 2)	562	NR_167676	389649		NM_207412	ENSG00000196166	LINC03042	C8orf86	long intergenic non-protein coding RNA 3042	ncRNA
214958	chr7	151840351	151840450	+	0	NA	intron (NM_016203, intron 1 of 15)	FRAM|SINE|Alu	-25529	NM_001040633	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
43338	chr11	76513201	76513450	+	0	NA	intron (NM_001300942, intron 10 of 21)	intron (NM_001300942, intron 10 of 21)	68300	NM_020193	56946		NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY transcriptional repressor, BRCA2 interacting	protein-coding
42858	chr11	73254201	73255080	+	0	NA	Intergenic	MIRb|SINE|MIR	-9865	NM_001277205	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
210390	chr7	99915371	99915530	+	0	NA	intron (NM_033091, intron 1 of 5)	intron (NM_033091, intron 1 of 5)	4080	NM_033091	89122		NM_033017	ENSG00000146833	TRIM4	RNF87	tripartite motif containing 4	protein-coding
21485	chr1	205677201	205677400	+	0	NA	intron (NM_033102, intron 1 of 4)	intron (NM_033102, intron 1 of 4)	3209	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
164174	chr3	56793151	56793450	+	0	NA	intron (NM_001289698, intron 2 of 10)	AluY|SINE|Alu	8649	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
205589	chr7	21432771	21432930	+	0	NA	intron (NM_003112, intron 3 of 5)	AluJo|SINE|Alu	4767	NM_001326543	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
197349	chr6	73449121	73449840	+	0	NA	intron (NM_138441, intron 1 of 4)	(AC)n|Simple_repeat|Simple_repeat	2817	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
190721	chr6	296271	297350	+	0	NA	intron (NR_104475, intron 1 of 3)	intron (NR_104475, intron 1 of 3)	4753	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
135587	chr2	166127821	166128200	+	0	NA	promoter-TSS (NM_001353960)	promoter-TSS (NM_001353960)	10	NR_148667	6323		NM_006920	ENSG00000144285	SCN1A	DEE6|DEE6A|DEE6B|DRVT|EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI	sodium voltage-gated channel alpha subunit 1	protein-coding
62968	chr13	112290071	112290330	+	0	NA	Intergenic	Intergenic	-17200	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
117008	chr19	18907301	18907730	+	0	NA	intron (NM_007263, intron 3 of 9)	intron (NM_007263, intron 3 of 9)	-10788	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
179054	chr4	165329001	165329800	+	0	NA	intron (NM_001017369, intron 1 of 4)	L2b|LINE|L2	1731	NM_006745	6307		NM_006745	ENSG00000052802	MSMO1	DESP4|ERG25|MCCPD|SC4MOL	methylsterol monooxygenase 1	protein-coding
195512	chr6	37201851	37203130	+	0	NA	Intergenic	AluSq2|SINE|Alu	32338	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
181760	chr5	50722321	50722880	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	55186	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
143981	chr20	32859101	32859300	+	0	NA	intron (NM_001143967, intron 1 of 26)	intron (NM_001143967, intron 1 of 26)	277	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
207927	chr7	50724451	50724750	+	0	NA	intron (NM_001350816, intron 2 of 17)	L3|LINE|CR1	7753	NM_001001549	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
215839	chr8	6834451	6834750	+	0	NA	promoter-TSS (NR_045217)	promoter-TSS (NR_045217)	924	NM_207411	389610		NM_207411	ENSG00000275591	XKR5	HARL2754|UNQ2754|XRG5A|XRG5BM	XK related 5	protein-coding
3935	chr1	17539701	17539900	+	0	NA	non-coding (NR_137288, exon 1 of 29)	non-coding (NR_137288, exon 1 of 29)	102	NR_137288	55160		NM_018125	ENSG00000074964	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor 10 like	protein-coding
137929	chr2	201070901	201072330	+	0	NA	promoter-TSS (NM_001321624)	promoter-TSS (NM_001321624)	56	NM_001321619	285172		NM_173822	ENSG00000155744	HYCC2	FAM126B	hyccin PI4KA lipid kinase complex subunit 2	protein-coding
233482	chr9	137810051	137810150	+	0	NA	intron (NM_024757, intron 18 of 26)	CpG	-21694	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
194729	chr6	33840071	33840430	+	0	NA	Intergenic	Intergenic	-36247	NM_001040109	4295		NM_002418	ENSG00000096395	MLN	-	motilin	protein-coding
128121	chr2	48319551	48320480	+	0	NA	intron (NM_001375452, intron 1 of 5)	intron (NM_001375452, intron 1 of 5)	5333	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
9051	chr1	44812421	44813000	+	0	NA	intron (NM_001136537, intron 4 of 7)	intron (NM_001136537, intron 4 of 7)	4228	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
102122	chr17	75038251	75038350	+	0	NA	TTS (NM_006356)	TTS (NM_006356)	5729	NR_110835	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
206863	chr7	37447271	37448100	+	0	NA	intron (NM_001206480, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	1267	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
154303	chr22	31947001	31947780	+	0	NA	intron (NM_003405, intron 1 of 1)	intron (NM_003405, intron 1 of 1)	-2028	NM_015372	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
46016	chr11	122100371	122100530	+	0	NA	promoter-TSS (NR_029671)	promoter-TSS (NR_029671)	396	NR_137178	399959		NR_024430	ENSG00000255248	MIR100HG	AGD1|linc-NeD125|lncRNA-N2	mir-100-let-7a-2-mir-125b-1 cluster host gene	ncRNA
159268	chr3	12957071	12957230	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	10580	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
42410	chr11	69054401	69054900	+	0	NA	intron (NM_139075, intron 2 of 24)	intron (NM_139075, intron 2 of 24)	5718	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
54686	chr12	93412551	93412900	+	0	NA	intron (NM_003348, intron 1 of 3)	LTR10C|LTR|ERV1	29222	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
25947	chr10	11440421	11440880	+	0	NA	Intergenic	MER41B|LTR|ERV1	91630	NM_001080491	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
164620	chr3	66383221	66383480	+	0	NA	exon (NM_001377349, exon 8 of 12)	exon (NM_001377349, exon 8 of 12)	22417	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
212437	chr7	128389571	128389730	+	0	NA	intron (NR_148338, intron 2 of 2)	intron (NR_148338, intron 2 of 2)	2968	NR_148339	107986845		NR_148338		LOC107986845	-	uncharacterized LOC107986845	ncRNA
189038	chr5	169653471	169653630	+	0	NA	intron (NR_156756, intron 1 of 52)	intron (NR_156756, intron 1 of 52)	16275	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
31856	chr10	99891771	99891930	+	0	NA	intron (NM_001318326, intron 8 of 13)	SVA_F|Retroposon|SVA	22242	NM_001318327	23268		NM_015221	ENSG00000107554	DNMBP	ARHGEF36|CTRCT48|TUBA	dynamin binding protein	protein-coding
230295	chr9	127946201	127946400	+	0	NA	intron (NM_203305, intron 3 of 7)	intron (NM_203305, intron 3 of 7)	4414	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
89368	chr16	88783271	88783700	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	1735	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
153980	chr22	30376801	30377000	+	0	NA	3' UTR (NM_001318334, exon 12 of 12)	3' UTR (NM_001318334, exon 12 of 12)	1005	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
181491	chr5	42988171	42988600	+	0	NA	intron (NR_104643, intron 1 of 1)	MER4-int|LTR|ERV1	4948	NR_104643	643977		NR_104643	ENSG00000287263	FLJ32255	-	uncharacterized LOC643977	ncRNA
209817	chr7	88090551	88091080	+	0	NA	intron (NM_021721, intron 4 of 27)	intron (NM_021721, intron 4 of 27)	-125845	NR_120517	102723885		NR_120517		SRI-AS1	-	SRI antisense RNA 1	ncRNA
89677	chr16	89378571	89378950	+	0	NA	intron (NR_045839, intron 2 of 9)	AluSx3|SINE|Alu	-52158	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
139819	chr2	230407771	230408600	+	0	NA	Intergenic	L1MB8|LINE|L1	-7971	NM_001206703	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
93651	chr17	19187351	19189000	+	0	NA	TTS (NR_006880)	TTS (NR_006880)	159	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
182052	chr5	55928551	55928850	+	0	NA	Intergenic	AluSp|SINE|Alu	66263	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
181517	chr5	43036221	43036980	+	0	NA	intron (NR_104651, intron 2 of 2)	AluJr|SINE|Alu	3719	NM_001014279	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
17811	chr1	159829121	159829450	+	0	NA	intron (NM_001330741, intron 1 of 3)	L2c|LINE|L2	2412	NM_020125	56833		NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
237022	chrX	102652001	102653200	+	0	NA	intron (NM_001184727, intron 3 of 5)	intron (NM_001184727, intron 3 of 5)	1117	NM_014710	9737		NM_014710	ENSG00000198932	GPRASP1	GASP|GASP-1|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding
11370	chr1	89640301	89640900	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	7480	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
212896	chr7	130887601	130888280	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	-10401	NR_029517	407024		NR_029517	ENSG00000283797	MIR29B1	MIRN29B1|miR-29b|miRNA29B1|mir-29b-1	microRNA 29b-1	ncRNA
76534	chr15	75130871	75131450	+	0	NA	Intergenic	L1MB2|LINE|L1	-70722	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
223872	chr9	214421	215680	+	0	NA	non-coding (NR_160804, exon 1 of 1)	non-coding (NR_160804, exon 1 of 1)	185	NM_203447	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
8229	chr1	39689601	39690030	+	0	NA	intron (NM_016257, intron 1 of 3)	intron (NM_016257, intron 1 of 3)	1618	NM_016257	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
148352	chr20	63836001	63836930	+	0	NA	Intergenic	Intergenic	-5201	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
5737	chr1	26433701	26434100	+	0	NA	intron (NM_205861, intron 2 of 8)	AluSx|SINE|Alu	1579	NM_205861	79947		NM_024887	ENSG00000117682	DHDDS	CIT|CPT|DEDSM|DS|HDS|RP59|hCIT	dehydrodolichyl diphosphate synthase subunit	protein-coding
127779	chr2	44183821	44184550	+	0	NA	intron (NM_177969, intron 1 of 4)	MIR|SINE|MIR	15310	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
17118	chr1	156162771	156162930	+	0	NA	intron (NM_001370567, intron 8 of 13)	intron (NM_001370567, intron 8 of 13)	8302	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
188587	chr5	157161571	157161930	+	0	NA	TTS (NM_130899)	TTS (NM_130899)	4514	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
219386	chr8	70405801	70406080	+	0	NA	Intergenic	Intergenic	-1723	NM_001321703	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
83180	chr16	23482371	23483200	+	0	NA	intron (NM_015044, intron 9 of 16)	intron (NM_015044, intron 9 of 16)	27709	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
161221	chr3	39182901	39183400	+	0	NA	TTS (NM_001351377)	TTS (NM_001351377)	9445	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
188806	chr5	158234371	158234530	+	0	NA	Intergenic	Intergenic	175323	NR_109888	101927697		NR_109888	ENSG00000276778	LINC02227	-	long intergenic non-protein coding RNA 2227	ncRNA
197376	chr6	73481871	73482230	+	0	NA	exon (NM_001123226, exon 9 of 13)	exon (NM_001123226, exon 9 of 13)	20313	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
231975	chr9	133185951	133186750	+	0	NA	Intergenic	L1MB5|LINE|L1	-22436	NM_021996	26301		NM_021996	ENSG00000148288	GBGT1	A3GALNT|FS|UNQ2513	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)	protein-coding
55916	chr12	109763071	109763230	+	0	NA	intron (NM_032829, intron 2 of 2)	intron (NM_032829, intron 2 of 2)	10337	NR_026662	84983		NM_032897	ENSG00000255650	FAM222A-AS1	-	FAM222A antisense RNA 1	ncRNA
91561	chr17	5076901	5077100	+	0	NA	Intergenic	Intergenic	-1467	NM_153018	124961		NM_153018	ENSG00000180787	ZFP3	ZNF752	ZFP3 zinc finger protein	protein-coding
95569	chr17	36937651	36937950	+	0	NA	5' UTR (NM_005568, exon 1 of 5)	5' UTR (NM_005568, exon 1 of 5)	325	NM_005568	3975		NM_005568	ENSG00000273706	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
21296	chr1	204463251	204463550	+	0	NA	intron (NM_001377335, intron 7 of 35)	intron (NM_001377335, intron 7 of 35)	31405	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
202094	chr6	154605271	154605730	+	0	NA	Intergenic	Intergenic	-94815	NM_173515	154043		NM_173515	ENSG00000153721	CNKSR3	CNK3|CNK3/IPCEF1|MAGI1	CNKSR family member 3	protein-coding
212868	chr7	130864201	130864600	+	0	NA	Intergenic	L1MA4|LINE|L1	12410	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
158787	chr3	9553501	9554130	+	0	NA	promoter-TSS (NM_198560)	promoter-TSS (NM_198560)	7	NM_198560	375323		NM_198560	ENSG00000156959	LHFPL4	GARLH4	LHFPL tetraspan subfamily member 4	protein-coding
107242	chr18	37444801	37445000	+	0	NA	intron (NR_148519, intron 2 of 12)	intron (NR_148519, intron 2 of 12)	21604	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
97845	chr17	44964901	44965100	+	0	NA	intron (NM_006688, intron 1 of 1)	AluSx|SINE|Alu	3303	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
89924	chr16	89720271	89721700	+	0	NA	promoter-TSS (NM_152287)	promoter-TSS (NM_152287)	-17	NM_152287	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
169657	chr3	171492371	171492530	+	0	NA	Intergenic	Intergenic	-32042	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
7301	chr1	32426971	32427130	+	0	NA	Intergenic	CpG	-32609	NM_001143889	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
19979	chr1	184972651	184972750	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	1808	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
167459	chr3	129101951	129102050	+	0	NA	intron (NM_001204890, intron 11 of 12)	LTR16E2|LTR|ERVL	19804	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
134400	chr2	138503251	138503980	+	0	NA	intron (NM_001001664, intron 1 of 10)	intron (NM_001001664, intron 1 of 10)	1845	NM_001001664	339745		NM_001001664	ENSG00000144228	SPOPL	BTBD33	speckle type BTB/POZ protein like	protein-coding
80116	chr16	2031751	2032050	+	0	NA	intron (NM_001130012, intron 2 of 6)	AluSx|SINE|Alu	-1394	NM_001252073	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
235236	chrX	41421421	41421680	+	0	NA	Intergenic	Intergenic	-25793	NM_001378477	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
144289	chr20	34700071	34700750	+	0	NA	Intergenic	AluJb|SINE|Alu	-3934	NM_021202	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
18417	chr1	161448201	161449600	+	0	NA	Intergenic	CpG	-56557	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
142514	chr20	4821871	4823000	+	0	NA	intron (NM_014737, intron 1 of 11)	CpG	1173	NM_014737	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
237944	chrX	132593051	132593150	+	0	NA	Intergenic	Intergenic	-74542	NR_046691	100874102		NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
1899	chr1	6451621	6452480	+	0	NA	exon (NM_001367473, exon 11 of 14)	exon (NM_001367473, exon 11 of 14)	14123	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
62324	chr13	99056551	99056850	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	29994	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
151717	chr22	17646721	17646980	+	0	NA	intron (NM_001270726, intron 1 of 5)	AluSx3|SINE|Alu	8093	NM_015367	23786		NM_015367	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2 like 13	protein-coding
111797	chr19	4452151	4452880	+	0	NA	intron (NM_025241, intron 3 of 10)	intron (NM_025241, intron 3 of 10)	2786	NM_001171091	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
172972	chr4	3953401	3953830	+	0	NA	intron (NR_130742, intron 1 of 3)	intron (NR_130742, intron 1 of 3)	1813	NR_130742	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
57793	chr12	123077771	123078130	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-3434	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
210738	chr7	100631421	100632330	+	0	NA	exon (NM_001206855, exon 5 of 15)	exon (NM_001206855, exon 5 of 15)	1775	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
169907	chr3	177652521	177653200	+	0	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-164005	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
53258	chr12	62798951	62799340	+	0	NA	intron (NM_020700, intron 3 of 9)	intron (NM_020700, intron 3 of 9)	136005	NM_020700	57460		NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent 1H	protein-coding
49863	chr12	36168751	36168850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2146304	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
95738	chr17	38588951	38589450	+	0	NA	intron (NM_025248, intron 1 of 18)	AluSq10|SINE|Alu	16752	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
236103	chrX	56963351	56963680	+	0	NA	Intergenic	Intergenic	32026	NM_001010862	169981		NM_001010862	ENSG00000204271	SPIN3	SPIN-3|TDRD27|bA445O16.1	spindlin family member 3	protein-coding
154009	chr22	30426101	30427830	+	0	NA	intron (NM_001003704, intron 2 of 2)	intron (NM_001003704, intron 2 of 2)	1197	NM_016498	51537		NM_016498	ENSG00000242114	MTFP1	HSPC242|MTP18	mitochondrial fission process 1	protein-coding
65847	chr14	54981721	54981980	+	0	NA	intron (NM_007086, intron 15 of 25)	intron (NM_007086, intron 15 of 25)	45249	NM_007086	11169		NM_007086	ENSG00000198554	WDHD1	AND-1|AND1|CHTF4|CTF4	WD repeat and HMG-box DNA binding protein 1	protein-coding
122546	chr19	49649721	49649980	+	0	NA	intron (NM_021228, intron 6 of 10)	MIR|SINE|MIR	7641	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
151689	chr22	17213921	17214930	+	0	NA	intron (NM_001282225, intron 1 of 9)	intron (NM_001282225, intron 1 of 9)	5010	NM_001282225	51816		NM_017424	ENSG00000093072	ADA2	ADGF|CECR1|IDGFL|PAN|SNEDS|VAIHS	adenosine deaminase 2	protein-coding
33453	chr10	119043051	119043150	+	0	NA	intron (NM_003750, intron 18 of 21)	AluJb|SINE|Alu	13386	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
72599	chr15	35667201	35667400	+	0	NA	intron (NR_038251, intron 1 of 2)	intron (NR_038251, intron 1 of 2)	121105	NR_038251	100507466		NR_038251		DPH6-DT	ATPBD4-AS1|DPH6-AS1	DPH6 divergent transcript	ncRNA
225853	chr9	38160671	38160900	+	0	NA	Intergenic	LTR50|LTR|ERVL	-91558	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
22161	chr1	212224401	212224600	+	0	NA	TTS (NR_125983)	TTS (NR_125983)	10236	NR_125983	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
35399	chr11	1385271	1385430	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-4584	NR_046331	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
31391	chr10	95132901	95133250	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-61125	NM_207321	142827		NM_207321	ENSG00000173124	ACSM6	C10orf129|bA310E22.3	acyl-CoA synthetase medium chain family member 6	protein-coding
50401	chr12	47319021	47319680	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-11951	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
141561	chr2	241515471	241516880	+	0	NA	Intergenic	L1M4|LINE|L1	-6603	NM_001282305	10494		NM_006374	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
50895	chr12	49272271	49273750	+	0	NA	exon (NM_001303117, exon 5 of 5)	exon (NM_001303117, exon 5 of 5)	7928	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
91292	chr17	4167401	4168580	+	0	NA	intron (NM_001330063, intron 24 of 24)	intron (NM_001330063, intron 24 of 24)	24293	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
104593	chr17	81399951	81400750	+	0	NA	TTS (NR_039894)	TTS (NR_039894)	428	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
137194	chr2	191147351	191147730	+	0	NA	intron (NM_003151, intron 2 of 23)	L1MB3|LINE|L1	3454	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
22868	chr1	225652771	225653800	+	0	NA	promoter-TSS (NM_018212)	promoter-TSS (NM_018212)	-162	NM_001377482	55740		NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	ENAH actin regulator	protein-coding
4773	chr1	23541571	23542100	+	0	NA	Intergenic	AluY|SINE|Alu	-10602	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
215765	chr8	2080951	2081050	+	0	NA	intron (NM_003970, intron 13 of 36).2	intron (NM_003970, intron 13 of 36).2	4411	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
34516	chr10	132617571	132617730	+	0	NA	intron (NM_005539, intron 2 of 15)	intron (NM_005539, intron 2 of 15)	-63625	NM_001321042	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
74889	chr15	63593501	63594550	+	0	NA	non-coding (NR_046341, exon 16 of 16)	non-coding (NR_046341, exon 16 of 16)	-3362	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
158619	chr3	4889001	4889700	+	0	NA	Intergenic	Intergenic	17151	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
118699	chr19	38210021	38210750	+	0	NA	TTS (NM_001135156)	TTS (NM_001135156)	13837	NM_001135155	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
151560	chr21	46557621	46557880	+	0	NA	exon (NM_015151, exon 31 of 38)	exon (NM_015151, exon 31 of 38)	47332	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
119216	chr19	39455371	39456730	+	0	NA	intron (NM_001111020, intron 3 of 29)	AluSq2|SINE|Alu	10402	NM_003169	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
159296	chr3	12986401	12987000	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	401	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
88533	chr16	85420621	85421280	+	0	NA	Intergenic	Intergenic	-114625	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
78908	chr15	101158651	101158950	+	0	NA	Intergenic	Intergenic	93248	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
221725	chr8	127458201	127458400	+	0	NA	intron (NR_024393, intron 4 of 4)	intron (NR_024393, intron 4 of 4)	23839	NR_024393	727677		NR_024393	ENSG00000246228	CASC8	CARLO1|CARLo-1|LINC00860	cancer susceptibility 8	ncRNA
232299	chr9	134465101	134465600	+	0	NA	Intergenic	CpG	58790	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
50860	chr12	49174071	49174430	+	0	NA	Intergenic	Intergenic	14830	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
102297	chr17	75341951	75342250	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	-52651	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
90743	chr17	2034051	2034830	+	0	NA	intron (NM_001346576, intron 3 of 11)	intron (NM_001346576, intron 3 of 11)	4287	NM_001383	1801		NM_001383	ENSG00000108963	DPH1	DEDSSH|DPH2L|DPH2L1|OVCA1	diphthamide biosynthesis 1	protein-coding
189974	chr5	177444201	177445100	+	0	NA	intron (NR_038915, intron 1 of 3)	L2c|LINE|L2	-1345	NM_001375593	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
124326	chr19	58181551	58182300	+	0	NA	Intergenic	L1M5|LINE|L1	-1064	NM_001278734	10782		NM_016324	ENSG00000171606	ZNF274	HFB101|ZF2|ZKSCAN19|ZSCAN51	zinc finger protein 274	protein-coding
177588	chr4	120156121	120156450	+	0	NA	Intergenic	Intergenic	-89437	NM_002358	4085		NM_002358	ENSG00000164109	MAD2L1	HSMAD2|MAD2	mitotic arrest deficient 2 like 1	protein-coding
92839	chr17	16212421	16212830	+	0	NA	intron (NM_006311, intron 1 of 45)	intron (NM_006311, intron 1 of 45)	2909	NM_006311	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
93359	chr17	18233751	18234600	+	0	NA	exon (NM_004140, exon 6 of 23)	exon (NM_004140, exon 6 of 23)	8540	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
129581	chr2	70058771	70058930	+	0	NA	intron (NR_033872, intron 5 of 10)	AluSq10|SINE|Alu	28165	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
13283	chr1	112952751	112953580	+	0	NA	intron (NM_003051, intron 1 of 4)	AluSz|SINE|Alu	2898	NM_001166496	6566		NM_003051	ENSG00000155380	SLC16A1	HHF7|MCT|MCT1|MCT1D	solute carrier family 16 member 1	protein-coding
195133	chr6	35678771	35678930	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluJo|SINE|Alu	10065	NM_001145776	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
132938	chr2	111445751	111446250	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	49161	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
219628	chr8	80138371	80139300	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	32286	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
57438	chr12	121895721	121895980	+	0	NA	intron (NR_048555, intron 2 of 4)	MLT1D|LTR|ERVL-MaLR	7060	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
63789	chr14	21294771	21295130	+	0	NA	intron (NM_020366, intron 3 of 24)	AluSx|SINE|Alu	14867	NM_020366	57096		NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	RPGR interacting protein 1	protein-coding
15670	chr1	150928721	150929000	+	0	NA	intron (NM_012432, intron 2 of 21)	L1PA5|LINE|L1	2497	NM_012432	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
231641	chr9	131613571	131613930	+	0	NA	intron (NM_001377935, intron 12 of 26)	intron (NM_001377935, intron 12 of 26)	37653	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
95493	chr17	36256301	36256500	+	0	NA	intron (NM_001291463, intron 11 of 13).13	intron (NM_001291463, intron 11 of 13).13	8113	NM_001291465	101060389		NM_001123390	ENSG00000274419	TBC1D3D	PRC17|TBC1D3|TBC1D3A|TBC1D3H	TBC1 domain family member 3D	protein-coding
127797	chr2	44244201	44244900	+	0	NA	Intergenic	UCON5|Unknown|Unknown	-30930	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
200451	chr6	135087401	135088230	+	0	NA	Intergenic	Intergenic	-32993	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
152056	chr22	19714151	19715980	+	0	NA	intron (NM_002688, intron 2 of 11)	intron (NM_002688, intron 2 of 11)	562	NM_002688	5413		NM_002688	ENSG00000184702	SEPTIN5	CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5|Septin-5	septin 5	protein-coding
13076	chr1	111507271	111508880	+	0	NA	intron (NM_001081976, intron 1 of 5)	intron (NM_001081976, intron 1 of 5)	-4442	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
20543	chr1	198700471	198700630	+	0	NA	intron (NM_002838, intron 5 of 32)	intron (NM_002838, intron 5 of 32)	61510	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
215476	chr7	158334871	158335030	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	197863	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
94607	chr17	29749371	29749730	+	0	NA	intron (NM_033389, intron 2 of 14)	Tigger3|DNA|TcMar-Tigger	11882	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
6848	chr1	31055851	31056150	+	0	NA	intron (NM_014676, intron 2 of 21)	intron (NM_014676, intron 2 of 21)	9717	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
82018	chr16	11940671	11940830	+	0	NA	intron (NM_001355514, intron 3 of 8)	AluSc|SINE|Alu	23688	NM_001355514	729978		NM_001355514	ENSG00000234719	NPIPB2	-	nuclear pore complex interacting protein family member B2	protein-coding
176131	chr4	83107671	83108700	+	0	NA	intron (NM_016619, intron 1 of 4)	intron (NM_016619, intron 1 of 4)	1704	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
109057	chr18	79837451	79837550	+	0	NA	Intergenic	THE1D-int|LTR|ERVL-MaLR	-26168	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
149275	chr21	26833901	26834300	+	0	NA	Intergenic	L1PBa|LINE|L1	11309	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
912	chr1	1694801	1695350	+	0	NA	Intergenic	Intergenic	-2280	NM_001110781	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
239059	chrY	7289201	7289400	+	0	NA	intron (NR_028062, intron 1 of 7)	AluSg|SINE|Alu	15328	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
226957	chr9	79817551	79817650	+	0	NA	Intergenic	Intergenic	-6930	NR_121213	101927477		NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
108741	chr18	77105101	77105600	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	27433	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
234240	chrX	13078871	13079680	+	0	NA	Intergenic	Intergenic	-34655	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
139602	chr2	225010851	225011180	+	0	NA	promoter-TSS (NR_039641)	promoter-TSS (NR_039641)	-475	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
122742	chr19	50094821	50095080	+	0	NA	Intergenic	L1PB1|LINE|L1	-2341	NR_024229	100170216		NR_024229		SNAR-A10	-	small NF90 (ILF3) associated RNA A10	snRNA
56800	chr12	120207621	120207880	+	0	NA	intron (NR_038924, intron 2 of 3)	MIR|SINE|MIR	6459	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
32030	chr10	101021071	101021900	+	0	NA	intron (NM_024895, intron 6 of 9)	intron (NM_024895, intron 6 of 9)	9644	NM_001195263	79955		NM_024895	ENSG00000186862	PDZD7	DFNB57|PDZK7	PDZ domain containing 7	protein-coding
209254	chr7	75888851	75889150	+	0	NA	TTS (NM_001040457)	TTS (NM_001040457)	9966	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
21761	chr1	206911021	206911700	+	0	NA	intron (NM_005449, intron 4 of 7)	MER33|DNA|hAT-Charlie	10581	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
25769	chr10	11141251	11142130	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-23191	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
72463	chr15	32407971	32408280	+	0	NA	intron (NR_027470, intron 4 of 4).3	intron (NR_027470, intron 4 of 4).3	-4833	NM_001355469	653075		NM_001355469	ENSG00000261247	GOLGA8T	-	golgin A8 family member T	protein-coding
48259	chr12	8572451	8572980	+	0	NA	Intergenic	Intergenic	-31810	NM_014358	26253		NM_014358	ENSG00000166523	CLEC4E	CLECSF9|MINCLE	C-type lectin domain family 4 member E	protein-coding
226607	chr9	73164921	73165180	+	0	NA	intron (NM_000700, intron 8 of 12)	intron (NM_000700, intron 8 of 12)	13185	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
37233	chr11	14502801	14503330	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	-3196	NM_001144062	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
189127	chr5	170681171	170681370	+	0	NA	non-coding (NR_136214, exon 1 of 6)	non-coding (NR_136214, exon 1 of 6)	200	NR_136214	105377716		NR_136214	ENSG00000253591	KCNIP1-AS1	-	KCNIP1 antisense RNA 1	ncRNA
139952	chr2	230863301	230863780	+	0	NA	promoter-TSS (NM_001287241)	promoter-TSS (NM_001287241)	-645	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
80323	chr16	2428071	2429850	+	0	NA	promoter-TSS (NM_001761)	promoter-TSS (NM_001761)	-487	NM_001761	899		NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1|FTDALS5	cyclin F	protein-coding
125319	chr2	10720971	10721130	+	0	NA	promoter-TSS (NM_001039362)	promoter-TSS (NM_001039362)	-580	NM_144583	245973		NM_144583	ENSG00000143882	ATP6V1C2	ATP6C2|VMA5	ATPase H+ transporting V1 subunit C2	protein-coding
196206	chr6	42767721	42768230	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	-15521	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
36436	chr11	4636821	4637550	+	0	NA	Intergenic	Intergenic	-2530	NM_001004751	390038		NM_001004751	ENSG00000197428	OR51D1	OR11-14|OR51D1Q	olfactory receptor family 51 subfamily D member 1	protein-coding
25538	chr10	7395251	7395350	+	0	NA	intron (NM_001029880, intron 1 of 20)	HAL1|LINE|L1	14041	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
207402	chr7	44240851	44241550	+	0	NA	intron (NM_172080, intron 11 of 19)	intron (NM_172080, intron 11 of 19)	40222	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
86021	chr16	57485571	57487080	+	0	NA	5' UTR (NM_018110, exon 1 of 9)	5' UTR (NM_018110, exon 1 of 9)	168	NM_001369618	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
80475	chr16	2701551	2702050	+	0	NA	intron (NM_018992, intron 4 of 5)	intron (NM_018992, intron 4 of 5)	18424	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
42657	chr11	72483871	72484030	+	0	NA	Intergenic	L2b|LINE|L2	-49266	NM_001258394	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
56461	chr12	116015651	116015750	+	0	NA	intron (NM_015335, intron 7 of 30)	intron (NM_015335, intron 7 of 30)	132954	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
100275	chr17	59623871	59624680	+	0	NA	intron (NM_004859, intron 1 of 31)	intron (NM_004859, intron 1 of 31)	4380	NM_004859	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
140057	chr2	231398271	231398430	+	0	NA	exon (NM_145236, exon 2 of 2)	exon (NM_145236, exon 2 of 2)	2640	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
116980	chr19	18877521	18877850	+	0	NA	TTS (NM_001290265)	TTS (NM_001290265)	18473	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
217725	chr8	30600751	30601200	+	0	NA	intron (NM_001348353, intron 6 of 6)	intron (NM_001348353, intron 6 of 6)	-37605	NM_001206847	100507341		NM_001206847	ENSG00000253457	SMIM18	-	small integral membrane protein 18	protein-coding
34712	chr10	133509721	133509980	+	0	NA	Intergenic	L1M3de|LINE|L1	-17513	NM_000773	1571		NM_000773	ENSG00000130649	CYP2E1	CPE1|CYP2E|P450-J|P450C2E	cytochrome P450 family 2 subfamily E member 1	protein-coding
195716	chr6	39048601	39049180	+	0	NA	exon (NM_002062, exon 1 of 13)	exon (NM_002062, exon 1 of 13)	109	NR_136563	2740		NM_002062	ENSG00000112164	GLP1R	GLP-1|GLP-1-R|GLP-1R	glucagon like peptide 1 receptor	protein-coding
189292	chr5	172112661	172113600	+	0	NA	intron (NM_005990, intron 4 of 18)	intron (NM_005990, intron 4 of 18)	75094	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
44246	chr11	100286021	100286450	+	0	NA	intron (NM_001243270, intron 17 of 23)	L1PA2|LINE|L1	-401053	NM_001367945	143872		NM_032021	ENSG00000165895	ARHGAP42	AD031|GRAF3|TMEM133	Rho GTPase activating protein 42	protein-coding
1320	chr1	2409421	2409680	+	0	NA	intron (NR_164636, intron 2 of 5)	L2a|LINE|L2	3014	NM_002617	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
214521	chr7	150503851	150504480	+	0	NA	Intergenic	Intergenic	-10707	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
45279	chr11	118033471	118033630	+	0	NA	intron (NM_001354434, intron 2 of 5)	L4_B_Mam|LINE|RTE-X	-43462	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
104020	chr17	80119171	80120900	+	0	NA	TTS (NM_001079804)	TTS (NM_001079804)	18454	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
41271	chr11	65844571	65845450	+	0	NA	intron (NM_152760, intron 1 of 12)	L1ME3|LINE|L1	11047	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
121008	chr19	45781221	45783050	+	0	NA	TTS (NM_004943)	TTS (NM_004943)	355	NM_001081562	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
207174	chr7	43609071	43609600	+	0	NA	non-coding (NR_146945, exon 7 of 7)	non-coding (NR_146945, exon 7 of 7)	26227	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
53035	chr12	57608601	57609280	+	0	NA	intron (NM_178502, intron 6 of 6)	intron (NM_178502, intron 6 of 6)	-1176	NM_001111270	115557		NM_133483	ENSG00000240771	ARHGEF25	GEFT|p63RhoGEF	Rho guanine nucleotide exchange factor 25	protein-coding
31699	chr10	97640221	97641700	+	0	NA	exon (NM_018425, exon 1 of 9)	exon (NM_018425, exon 1 of 9)	274	NM_018425	55361		NM_018425	ENSG00000155252	PI4K2A	NEDMSB|PI4KII|PIK42A	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
177949	chr4	138919171	138919400	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	93361	NR_133945	105377448		NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
35691	chr11	1916171	1916550	+	0	NA	Intergenic	Intergenic	-3343	NM_001042781	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
135969	chr2	172095301	172095930	+	0	NA	Intergenic	CpG	7285	NM_004405	1746		NM_004405	ENSG00000115844	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
205967	chr7	26163871	26164030	+	0	NA	intron (NM_004289, intron 1 of 3)	L1PA5|LINE|L1	11752	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
234573	chrX	19753071	19753230	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	46623	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
124688	chr2	3518471	3520230	+	0	NA	intron (NM_018269, intron 1 of 3)	CpG	181	NM_018269	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
144853	chr20	36892871	36893450	+	0	NA	3' UTR (NM_001304783, exon 6 of 6)	3' UTR (NM_001304783, exon 6 of 6)	17022	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
179830	chr5	470121	470480	+	0	NA	TTS (NM_004174)	TTS (NM_004174)	2665	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
70855	chr14	103707271	103707430	+	0	NA	intron (NM_001371232, intron 5 of 9)	intron (NM_001371232, intron 5 of 9)	8101	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
118677	chr19	37817271	37817700	+	0	NA	promoter-TSS (NR_040013)	promoter-TSS (NR_040013)	74	NR_040013	644554		NR_040013		LOC644554	-	uncharacterized LOC644554	ncRNA
96894	chr17	42119571	42119930	+	0	NA	intron (NM_001376227, intron 4 of 17)	intron (NM_001376227, intron 4 of 17)	1617	NM_021078	2648		NM_021078	ENSG00000108773	KAT2A	GCN5|GCN5L2|PCAF-b|hGCN5	lysine acetyltransferase 2A	protein-coding
201145	chr6	142909501	142910300	+	0	NA	intron (NM_006734, intron 1 of 9)	Tigger15a|DNA|TcMar-Tigger	35276	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
124415	chr19	58449201	58449600	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-2222	NM_207395	388569		NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
68403	chr14	80973671	80974330	+	0	NA	intron (NM_001142626, intron 1 of 8)	intron (NM_001142626, intron 1 of 8)	18379	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
125013	chr2	9554151	9554250	+	0	NA	intron (NM_001382778, intron 1 of 18)	intron (NM_001382778, intron 1 of 18)	1630	NM_003183	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
232277	chr9	134434051	134434550	+	0	NA	intron (NM_001291921, intron 8 of 8)	intron (NM_001291921, intron 8 of 8)	27740	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
212341	chr7	127431101	127431300	+	0	NA	Intergenic	Intergenic	-38492	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
52559	chr12	56151401	56154080	+	0	NA	intron (NM_002475, intron 1 of 7)	intron (NM_002475, intron 1 of 7)	153	NM_002475	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
102279	chr17	75314271	75314430	+	0	NA	Intergenic	Intergenic	-24901	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
65426	chr14	50875021	50876030	+	0	NA	intron (NM_181814, intron 1 of 10)	intron (NM_181814, intron 1 of 10)	3365	NM_181814	145447		NM_181533	ENSG00000131969	ABHD12B	BEM46L3|C14orf29|c14_5314	abhydrolase domain containing 12B	protein-coding
77753	chr15	85755171	85755330	+	0	NA	intron (NR_120366, intron 5 of 5)	intron (NR_120366, intron 5 of 5)	3475	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
169422	chr3	161254921	161255180	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	33739	NM_015938	51068		NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
2071	chr1	7933451	7933750	+	0	NA	intron (NM_001561, intron 6 of 7)	AluSx1|SINE|Alu	7239	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
58137	chr12	124904151	124904730	+	0	NA	Intergenic	Intergenic	10210	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
79810	chr16	1410451	1410750	+	0	NA	intron (NM_001372107, intron 2 of 14)	intron (NM_001372107, intron 2 of 14)	4104	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
235062	chrX	40155731	40156200	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	21312	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
101995	chr17	74765621	74765880	+	0	NA	intron (NM_004252, intron 3 of 5)	AluSx1|SINE|Alu	10595	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
172294	chr4	1570351	1570850	+	0	NA	Intergenic	Intergenic	113391	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
40121	chr11	62823871	62824430	+	0	NA	intron (NM_001244666, intron 10 of 10)	intron (NM_001244666, intron 10 of 10)	7901	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
73298	chr15	41877301	41877500	+	0	NA	intron (NM_016642, intron 17 of 67)	intron (NM_016642, intron 17 of 67)	-10849	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
19602	chr1	179816371	179816680	+	0	NA	TTS (NM_001329717)	TTS (NM_001329717)	12601	NR_162130	113219451		NR_162130		MIR12116	-	microRNA 12116	ncRNA
184150	chr5	95618171	95618530	+	0	NA	Intergenic	Intergenic	-1737	NM_199243	285601		NM_199243	ENSG00000178015	GPR150	PGR11	G protein-coupled receptor 150	protein-coding
64166	chr14	22921021	22921480	+	0	NA	intron (NR_120600, intron 1 of 1)	L2b|LINE|L2	1794	NR_120599	100505758		NR_120599	ENSG00000237054	PRMT5-AS1	-	PRMT5 antisense RNA 1	ncRNA
132074	chr2	101272121	101273380	+	0	NA	TTS (NR_003070)	TTS (NR_003070)	299	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
40828	chr11	64971671	64972530	+	0	NA	promoter-TSS (NM_001300803)	promoter-TSS (NM_001300803)	8	NM_001037225	283129		NM_001037225	ENSG00000168070	MAJIN	C11orf85	membrane anchored junction protein	protein-coding
146745	chr20	50803051	50803500	+	0	NA	intron (NM_198799, intron 1 of 4)	intron (NM_198799, intron 1 of 4)	8214	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
239353	chrY	19502701	19503430	+	0	NA	promoter-TSS (NR_002923)	promoter-TSS (NR_002923)	88	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
47185	chr12	801421	801880	+	0	NA	intron (NM_018979, intron 1 of 27)	AluJr|SINE|Alu	48727	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
74414	chr15	59018871	59019030	+	0	NA	intron (NM_001270530, intron 1 of 13)	AluJb|SINE|Alu	30804	NM_001270530	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
158802	chr3	9702151	9702680	+	0	NA	TTS (NM_001077526)	TTS (NM_001077526)	-1418	NM_001308388	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
147155	chr20	56417071	56417430	+	0	NA	intron (NM_001164114, intron 1 of 5)	intron (NM_001164114, intron 1 of 5)	4990	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
161433	chr3	42011701	42011900	+	0	NA	Intergenic	L1MD2|LINE|L1	-49697	NR_136342	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
15521	chr1	150509801	150510000	+	0	NA	exon (NM_001202858, exon 4 of 10)	exon (NM_001202858, exon 4 of 10)	1791	NM_004425	1893		NM_004425	ENSG00000143369	ECM1	URBWD	extracellular matrix protein 1	protein-coding
34224	chr10	129967321	129967580	+	0	NA	Intergenic	CpG-3521	-3176	NM_001375390	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
11529	chr1	90993071	90993430	+	0	NA	intron (NM_032186, intron 1 of 3)	MLT1H|LTR|ERVL-MaLR	28258	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
225289	chr9	34501671	34502030	+	0	NA	intron (NM_012144, intron 12 of 19)	intron (NM_012144, intron 12 of 19)	21140	NM_198573	375704		NM_198573	ENSG00000168913	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
81574	chr16	9138771	9139400	+	0	NA	Intergenic	Intergenic	47441	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
18650	chr1	166969071	166969630	+	0	NA	intron (NM_199351, intron 1 of 9)	intron (NM_199351, intron 1 of 9)	6190	NM_199351	387597		NM_199351	ENSG00000143195	ILDR2	C1orf32|dJ782G3.1	immunoglobulin like domain containing receptor 2	protein-coding
111779	chr19	4431871	4432230	+	0	NA	exon (NM_005483, exon 12 of 15)	exon (NM_005483, exon 12 of 15)	-13928	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
163041	chr3	49867651	49868380	+	0	NA	intron (NM_001320147, intron 1 of 11)	intron (NM_001320147, intron 1 of 11)	1891	NM_024046	79012		NM_024046	ENSG00000164076	CAMKV	1G5|VACAMKL	CaM kinase like vesicle associated	protein-coding
156777	chr22	41895921	41896380	+	0	NA	intron (NR_103834, intron 14 of 21)	AluY|SINE|Alu	-4794	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
232026	chr9	133375501	133376850	+	0	NA	promoter-TSS (NM_001280789).2	promoter-TSS (NM_001280789).2	-9	NM_001280792	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
223428	chr8	143954251	143954650	+	0	NA	promoter-TSS (NM_201379)	promoter-TSS (NM_201379)	-616	NM_201379	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
217892	chr8	37879671	37880050	+	0	NA	intron (NM_025151, intron 1 of 4)	AluSz|SINE|Alu	19637	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
22378	chr1	218330021	218330300	+	0	NA	intron (NM_016052, intron 4 of 4)	L2b|LINE|L2	-15124	NR_138148	7042		NM_003238	ENSG00000092969	TGFB2	G-TSF|LDS4|TGF-beta2	transforming growth factor beta 2	protein-coding
79458	chr16	729471	730030	+	0	NA	TTS (NM_032304)	TTS (NM_032304)	2644	NM_032304	84264		NM_032304	ENSG00000103253	HAGHL	-	hydroxyacylglutathione hydrolase like	protein-coding
153719	chr22	29294451	29295130	+	0	NA	intron (NM_001163286, intron 10 of 15)	AluSc|SINE|Alu	-12233	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
113799	chr19	10570621	10571330	+	0	NA	Intergenic	Intergenic	-1996	NM_079421	1032		NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
174642	chr4	40503001	40503200	+	0	NA	promoter-TSS (NR_039966)	promoter-TSS (NR_039966)	-981	NR_039966	100616274		NR_039966	ENSG00000263642	MIR4802	-	microRNA 4802	ncRNA
205355	chr7	13525071	13525300	+	0	NA	Intergenic	Intergenic	461329	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
60633	chr13	42369121	42369580	+	0	NA	Intergenic	Intergenic	-55542	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
187056	chr5	140073071	140073550	+	0	NA	Intergenic	Intergenic	-30011	NM_013982	9542		NM_004883	ENSG00000158458	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding
76476	chr15	74867801	74868700	+	0	NA	intron (NM_001320778, intron 1 of 9)	intron (NM_001320778, intron 1 of 9)	5115	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
159029	chr3	10992651	10992750	+	0	NA	promoter-TSS (NM_001348251)	promoter-TSS (NM_001348251)	-34	NM_001348251	6529		NM_003042	ENSG00000157103	SLC6A1	GABATHG|GABATR|GAT1|MAE|hGAT-1	solute carrier family 6 member 1	protein-coding
77273	chr15	81809751	81809850	+	0	NA	Intergenic	Intergenic	236218	NM_032246	84206		NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
188969	chr5	163461301	163462730	+	0	NA	intron (NM_001142557, intron 1 of 14)	MamSINE1|SINE|tRNA-RTE	1383	NM_001142556	3161		NM_012484	ENSG00000072571	HMMR	CD168|IHABP|RHAMM	hyaluronan mediated motility receptor	protein-coding
37315	chr11	14770701	14770900	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	120871	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
67077	chr14	68094271	68094430	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	270758	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
166165	chr3	111614651	111615180	+	0	NA	intron (NR_134917, intron 8 of 14)	LTR78|LTR|ERV1	-19569	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
50370	chr12	47216201	47217300	+	0	NA	promoter-TSS (NR_026544)	promoter-TSS (NR_026544)	-307	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
129306	chr2	68643121	68644050	+	0	NA	promoter-TSS (NM_138964)	promoter-TSS (NM_138964)	6	NM_138964	10887		NM_138964	ENSG00000169618	PROKR1	GPR73|GPR73a|PK-R1|PKR1|ZAQ	prokineticin receptor 1	protein-coding
1453	chr1	2657571	2658280	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-24909	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
80093	chr16	2006751	2007330	+	0	NA	intron (NM_178167, intron 3 of 13)	intron (NM_178167, intron 3 of 13)	2781	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
186320	chr5	134591171	134591530	+	0	NA	Intergenic	Intergenic	41478	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
72070	chr15	28890351	28891430	+	0	NA	intron (NM_001353788, intron 1 of 14).2	intron (NM_001353788, intron 1 of 14).2	4916	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
103975	chr17	79996801	79998200	+	0	NA	intron (NM_019020, intron 3 of 11)	MER58D|DNA|hAT-Charlie	38372	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
58339	chr12	131535971	131536780	+	0	NA	Intergenic	Intergenic	111746	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
77086	chr15	78910771	78911980	+	0	NA	Intergenic	AluSg7|SINE|Alu	33671	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
236915	chrX	88841051	88841150	+	0	NA	Intergenic	L1M1|LINE|L1	93875	NM_001184771	53336		NM_033048	ENSG00000147183	CPXCR1	CT77	CPX chromosome region candidate 1	protein-coding
66487	chr14	61661821	61663020	+	0	NA	Intergenic	Intergenic	-33093	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
86391	chr16	66612201	66612400	+	0	NA	intron (NM_144601, intron 5 of 5)	AluSx|SINE|Alu	7569	NR_037619	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
78162	chr15	90422921	90423800	+	0	NA	intron (NM_003870, intron 2 of 37)	AluSz|SINE|Alu	35118	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
198095	chr6	90283771	90285230	+	0	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	12343	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
207620	chr7	44997471	44997880	+	0	NA	Intergenic	AluSx|SINE|Alu	-2071	NR_030770	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
49425	chr12	23642851	23643050	+	0	NA	intron (NM_152989, intron 10 of 17)	AluYa5|SINE|Alu	-58364	NM_178010	6660		NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box transcription factor 5	protein-coding
215449	chr7	157878651	157878950	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	24215	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
95075	chr17	32927801	32928530	+	0	NA	promoter-TSS (NM_015544)	promoter-TSS (NM_015544)	12	NM_015544	26022		NM_015544	ENSG00000006042	TMEM98	TADA1	transmembrane protein 98	protein-coding
107126	chr18	35096251	35096630	+	0	NA	intron (NR_046177, intron 2 of 6)	intron (NR_046177, intron 2 of 6)	55027	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
170487	chr3	186068021	186068280	+	0	NA	intron (NM_004454, intron 7 of 12)	intron (NM_004454, intron 7 of 12)	40939	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
220894	chr8	105319021	105319600	+	0	NA	promoter-TSS (NM_001362837)	promoter-TSS (NM_001362837)	-233	NM_001362837	23414		NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
235178	chrX	41275521	41276800	+	0	NA	non-coding (NR_135616, exon 2 of 2)	non-coding (NR_135616, exon 2 of 2)	421	NR_135616	105373185		NR_135616	ENSG00000223714	LINC02601	-	long intergenic non-protein coding RNA 2601	ncRNA
199631	chr6	121237151	121237250	+	0	NA	intron (NR_104452, intron 20 of 35)	L1MEf|LINE|L1	97280	NM_152730	221322		NM_152730	ENSG00000146350	TBC1D32	BROMI|C6orf170|C6orf171	TBC1 domain family member 32	protein-coding
49373	chr12	22397451	22397830	+	0	NA	Intergenic	MER95|LTR|ERV1	-62926	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
227088	chr9	85714171	85714330	+	0	NA	intron (NM_001330701, intron 1 of 25)	intron (NM_001330701, intron 1 of 25)	27704	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
65648	chr14	52325071	52325930	+	0	NA	intron (NM_000956, intron 1 of 1)	intron (NM_000956, intron 1 of 1)	11188	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
41751	chr11	66684301	66685100	+	0	NA	3' UTR (NM_006946, exon 38 of 38)	3' UTR (NM_006946, exon 38 of 38)	-6813	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
45759	chr11	119223121	119223380	+	0	NA	intron (NM_005188, intron 1 of 15)	AluJo|SINE|Alu	16911	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
210529	chr7	100231951	100232050	+	0	NA	intron (NR_166147, intron 2 of 4)	intron (NR_166147, intron 2 of 4)	12752	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
97510	chr17	43928871	43929030	+	0	NA	Intergenic	LTR46|LTR|ERV1	-9311	NR_136406	107546764		NR_136406	ENSG00000261514	LINC01976	-	long intergenic non-protein coding RNA 1976	ncRNA
84993	chr16	31466371	31466730	+	0	NA	exon (NM_001301820, exon 7 of 7)	exon (NM_001301820, exon 7 of 7)	-5602	NM_001042454	7041		NM_015927	ENSG00000140682	TGFB1I1	ARA55|HIC-5|HIC5|TSC-5	transforming growth factor beta 1 induced transcript 1	protein-coding
164927	chr3	71202901	71203300	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	41977	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
28269	chr10	45826101	45826500	+	0	NA	exon (NM_001291379, exon 10 of 10)	exon (NM_001291379, exon 10 of 10)	-8976	NM_001351234	643479		NM_001351234	ENSG00000290779	FAM25EP	FAM25D|FAM25E	family with sequence similarity 25 member E	pseudo
212847	chr7	130840501	130840900	+	0	NA	Intergenic	Intergenic	36110	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
84822	chr16	31092871	31093450	+	0	NA	intron (NM_001311311, intron 2 of 3)	intron (NM_001311311, intron 2 of 3)	1637	NM_024006	79001		NM_024006	ENSG00000167397	VKORC1	EDTP308|MST134|MST576|VKCFD2|VKOR	vitamin K epoxide reductase complex subunit 1	protein-coding
153687	chr22	29154301	29154700	+	0	NA	intron (NM_032045, intron 9 of 9)	intron (NM_032045, intron 9 of 9)	-51396	NM_133455	129080		NM_133455	ENSG00000186998	EMID1	EMI5|EMU1	EMI domain containing 1	protein-coding
145374	chr20	41172851	41174030	+	0	NA	exon (NM_002660, exon 28 of 32)	exon (NM_002660, exon 28 of 32)	4417	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
139420	chr2	222701621	222702000	+	0	NA	intron (NM_058165, intron 5 of 5)	intron (NM_058165, intron 5 of 5)	30152	NM_058165	116255		NM_058165	ENSG00000124003	MOGAT1	DGAT2L|DGAT2L1|MGAT1	monoacylglycerol O-acyltransferase 1	protein-coding
22667	chr1	223786551	223786850	+	0	NA	intron (NM_001031685, intron 16 of 17)	AluY|SINE|Alu	59247	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
111746	chr19	4364121	4364580	+	0	NA	intron (NM_001199943, intron 3 of 8)	AluJr|SINE|Alu	20788	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
5786	chr1	26537701	26538280	+	0	NA	intron (NM_002953, intron 2 of 21)	intron (NM_002953, intron 2 of 21)	-5122	NM_001330441	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
4979	chr1	24199151	24199930	+	0	NA	promoter-TSS (NR_027087)	promoter-TSS (NR_027087)	-700	NR_027087	284632		NR_027087	ENSG00000230023	LINC02800	-	long intergenic non-protein coding RNA 2800	ncRNA
118858	chr19	38649121	38649450	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	1636	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
173125	chr4	6582901	6583400	+	0	NA	intron (NM_015274, intron 3 of 18)	MLT1J2|LTR|ERVL-MaLR	7961	NM_001292038	23324		NM_015274	ENSG00000013288	MAN2B2	EpMAN	mannosidase alpha class 2B member 2	protein-coding
127542	chr2	42336651	42336950	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	23238	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
214345	chr7	149477071	149477230	+	0	NA	intron (NM_152557, intron 5 of 6)	intron (NM_152557, intron 5 of 6)	-16088	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
11895	chr1	93178921	93180000	+	0	NA	intron (NR_030761, intron 1 of 4)	intron (NR_030761, intron 1 of 4)	953	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
4347	chr1	20650021	20650850	+	0	NA	non-coding (NR_046507, exon 1 of 3)	non-coding (NR_046507, exon 1 of 3)	1758	NR_046507	100861548		NR_046507	ENSG00000117242	PINK1-AS	NAPINK1|PINK1-AS1|PINK1AS	PINK1 antisense RNA	ncRNA
40730	chr11	64813901	64814200	+	0	NA	Intergenic	L2a|LINE|L2	-2756	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
11401	chr1	89694271	89694430	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	61230	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
15409	chr1	150243001	150243200	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-6988	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
122411	chr19	49445821	49446200	+	0	NA	TTS (NM_017916)	TTS (NM_017916)	-4483	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
108412	chr18	69935051	69936680	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	12008	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
214870	chr7	151387251	151387700	+	0	NA	intron (NM_001284260, intron 3 of 5)	intron (NM_001284260, intron 3 of 5)	-21686	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
46193	chr11	123437821	123438280	+	0	NA	intron (NM_001367421, intron 2 of 20)	intron (NM_001367421, intron 2 of 20)	7781	NM_001354837	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
98055	chr17	45449271	45449630	+	0	NA	intron (NM_014798, intron 8 of 11).3	intron (NM_014798, intron 8 of 11).3	-16580	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
23220	chr1	227730401	227731400	+	0	NA	TTS (NM_001161465)	TTS (NM_001161465)	2382	NR_136654	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
60354	chr13	40813821	40814380	+	0	NA	intron (NR_038259, intron 5 of 5)	L1PA16|LINE|L1	3334	NR_030352	693206		NR_030352	ENSG00000207652	MIR621	MIRN621|hsa-mir-621	microRNA 621	ncRNA
212525	chr7	128833971	128834130	+	0	NA	intron (NM_001458, intron 1 of 47)	intron (NM_001458, intron 1 of 47)	3644	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
166504	chr3	114319471	114319930	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-3131	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
175885	chr4	80065401	80065800	+	0	NA	intron (NM_001145794, intron 3 of 15)	intron (NM_001145794, intron 3 of 15)	7629	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
101482	chr17	67520321	67520880	+	0	NA	intron (NM_181671, intron 1 of 9)	L2b|LINE|L2	-49015	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
11860	chr1	93021551	93022180	+	0	NA	Intergenic	Intergenic	-57370	NM_001164393	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
48779	chr12	11652321	11652630	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	2801	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
90784	chr17	2083371	2084150	+	0	NA	intron (NM_001282326, intron 2 of 6)	intron (NM_001282326, intron 2 of 6)	5001	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
86856	chr16	67936501	67937930	+	0	NA	promoter-TSS (NM_002801)	promoter-TSS (NM_002801)	-365	NM_002801	5699		NM_002801	ENSG00000205220	PSMB10	LMP10|MECL1|PRAAS5|beta2i	proteasome 20S subunit beta 10	protein-coding
102246	chr17	75259621	75260050	+	0	NA	intron (NM_001291641, intron 1 of 17)	intron (NM_001291641, intron 1 of 17)	1771	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
159323	chr3	13019221	13019780	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-32399	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
110544	chr19	2095201	2095500	+	0	NA	intron (NM_130807, intron 1 of 4)	intron (NM_130807, intron 1 of 4)	976	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
226365	chr9	70093851	70094150	+	0	NA	intron (NM_153267, intron 2 of 13)	intron (NM_153267, intron 2 of 13)	50152	NM_153267	256691		NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
194538	chr6	33312001	33313360	+	0	NA	intron (NM_172209, intron 2 of 6).2	intron (NM_172209, intron 2 of 6).2	1398	NM_003190	6892		NM_003190	ENSG00000231925	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein	protein-coding
204459	chr7	4641301	4643030	+	0	NA	Intergenic	CpG	-40130	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
134457	chr2	143183951	143184280	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	54696	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
5613	chr1	26128601	26128830	+	0	NA	Intergenic	AluJb|SINE|Alu	16891	NM_152835	149420		NM_152835	ENSG00000175087	PDIK1L	CLIK1L|STK35L2	PDLIM1 interacting kinase 1 like	protein-coding
199709	chr6	125299121	125300000	+	0	NA	intron (NM_016063, intron 2 of 5)	intron (NM_016063, intron 2 of 5)	2407	NM_016063	51020		NM_016063	ENSG00000111906	HDDC2	C6orf74|CGI-130|NS5ATP2|dJ167O5.2	HD domain containing 2	protein-coding
169950	chr3	179088471	179088630	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-16037	NM_001375827	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
124293	chr19	57853001	57853200	+	0	NA	intron (NM_001204817, intron 1 of 2)	AluSx|SINE|Alu	3241	NM_001204817	84914		NM_017961	ENSG00000198466	ZNF587	ZF6	zinc finger protein 587	protein-coding
62102	chr13	94860851	94861150	+	0	NA	intron (NR_110754, intron 2 of 4)	GA-rich|Low_complexity|Low_complexity	-99041	NR_047487	100861544		NR_047487	ENSG00000260962	LINC00557	-	long intergenic non-protein coding RNA 557	ncRNA
17242	chr1	156337051	156337250	+	0	NA	promoter-TSS (NM_144627)	promoter-TSS (NM_144627)	-164	NM_144627	128229		NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding
61506	chr13	52809371	52809630	+	0	NA	promoter-TSS (NR_031582)	promoter-TSS (NR_031582)	-550	NR_031582	100313778		NR_031582	ENSG00000211579	MIR759	hsa-mir-759	microRNA 759	ncRNA
172788	chr4	2945971	2946350	+	0	NA	intron (NM_001291978, intron 11 of 17)	intron (NM_001291978, intron 11 of 17)	10614	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
89878	chr16	89647351	89647900	+	0	NA	intron (NM_002768, intron 4 of 6)	CpG	10083	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
59733	chr13	29849901	29851100	+	0	NA	5' UTR (NM_007106, exon 1 of 5)	5' UTR (NM_007106, exon 1 of 5)	117	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
192372	chr6	24707871	24708330	+	0	NA	intron (NM_030939, intron 4 of 4)	MER5A1|DNA|hAT-Charlie	11054	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
159247	chr3	12927271	12927630	+	0	NA	intron (NM_014869, intron 3 of 13)	intron (NM_014869, intron 3 of 13)	40280	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
142963	chr20	19784921	19785180	+	0	NA	intron (NM_001378238, intron 1 of 11)	intron (NM_001378238, intron 1 of 11)	26792	NM_018993	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
183519	chr5	79629651	79629750	+	0	NA	intron (NM_173797, intron 5 of 15)	AluY|SINE|Alu	17259	NM_001349554	167153		NM_173797	ENSG00000164329	TENT2	APD4|GLD2|PAPD4|TUT2	terminal nucleotidyltransferase 2	protein-coding
121464	chr19	47058451	47058750	+	0	NA	Intergenic	MER77|LTR|ERVL	-9976	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
186577	chr5	138491671	138492780	+	0	NA	Intergenic	CpG	26746	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
177976	chr4	139083701	139085800	+	0	NA	promoter-TSS (NM_006874)	promoter-TSS (NM_006874)	-336	NM_001276457	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
115424	chr19	15305651	15305950	+	0	NA	intron (NM_001379291, intron 1 of 19)	Tigger1|DNA|TcMar-Tigger	-25349	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
151332	chr21	45613201	45613780	+	0	NA	Intergenic	Intergenic	19836	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
89171	chr16	88544171	88544700	+	0	NA	Intergenic	Intergenic	-13382	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
169600	chr3	171162951	171163480	+	0	NA	intron (NM_001161560, intron 10 of 31)	intron (NM_001161560, intron 10 of 31)	-56456	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
93157	chr17	17763921	17764580	+	0	NA	intron (NR_130894, intron 1 of 1)	L1ME3A|LINE|L1	2052	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
42912	chr11	73386551	73386830	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	10022	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
122597	chr19	49761821	49762550	+	0	NA	exon (NM_021733, exon 2 of 11)	exon (NM_021733, exon 2 of 11)	1121	NM_021733	60385		NM_021733	ENSG00000126467	TSKS	PPP1R161|STK22S1|TSKS1|TSSKS	testis specific serine kinase substrate	protein-coding
193270	chr6	29967401	29968130	+	0	NA	Intergenic	HERVP71A-int|LTR|ERV1	-7350	NR_028032	10255		NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9	ncRNA
123177	chr19	52271901	52272100	+	0	NA	intron (NM_001010851, intron 1 of 3)	AluSz|SINE|Alu	2413	NM_001010851	90321		NM_001010851	ENSG00000196214	ZNF766	-	zinc finger protein 766	protein-coding
25618	chr10	8074721	8075180	+	0	NA	3' UTR (NM_002051, exon 6 of 6)	3' UTR (NM_002051, exon 6 of 6)	20262	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
126119	chr2	26037551	26037880	+	0	NA	intron (NM_016131, intron 1 of 5)	MIR|SINE|MIR	3631	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
41063	chr11	65493921	65494380	+	0	NA	Intergenic	Intergenic	-3588	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
73316	chr15	41897371	41897730	+	0	NA	3' UTR (NM_139265, exon 6 of 6)	3' UTR (NM_139265, exon 6 of 6)	-3497	NM_016642	51332		NM_016642	ENSG00000137877	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin beta, non-erythrocytic 5	protein-coding
98444	chr17	46924501	46925000	+	0	NA	intron (NM_001363851, intron 1 of 5)	intron (NM_001363851, intron 1 of 5)	1590	NM_001321133	9570		NM_004287	ENSG00000108433	GOSR2	Bos1|EPM6|GS27|MYOS	golgi SNAP receptor complex member 2	protein-coding
8278	chr1	39953501	39953980	+	0	NA	Intergenic	L2b|LINE|L2	-1372	NM_001287808	84879		NM_032793	ENSG00000168389	MFSD2A	HsMFSD2A|MCPH15|MFSD2|NEDMISBA|NLS1|SLC59A1	MFSD2 lysolipid transporter A, lysophospholipid	protein-coding
217996	chr8	38390371	38390530	+	0	NA	intron (NM_144652, intron 2 of 9)	AluSx1|SINE|Alu	3319	NM_001199660	137994		NM_144652	ENSG00000165046	LETM2	SLC55A2	leucine zipper and EF-hand containing transmembrane protein 2	protein-coding
51507	chr12	52151451	52152980	+	0	NA	Intergenic	CpG	39799	NM_001081492	144501		NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
109112	chr18	80042771	80043030	+	0	NA	intron (NM_024805, intron 5 of 6)	intron (NM_024805, intron 5 of 6)	8466	NM_001171967	79863		NM_024805	ENSG00000101546	RBFA	C18orf22|HsT169	ribosome binding factor A	protein-coding
89711	chr16	89408151	89408450	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-22618	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
155573	chr22	38739471	38739830	+	0	NA	intron (NM_001199580, intron 14 of 18)	intron (NM_001199580, intron 14 of 18)	15816	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
169264	chr3	157179221	157179480	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-19203	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
9995	chr1	55140351	55140930	+	0	NA	intron (NM_015306, intron 24 of 67)	intron (NM_015306, intron 24 of 67)	74724	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
33085	chr10	110901971	110902780	+	0	NA	intron (NM_001243783, intron 1 of 2)	intron (NM_001243783, intron 1 of 2)	4285	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
175004	chr4	51851271	51851630	+	0	NA	intron (NM_001287757, intron 2 of 11)	intron (NM_001287757, intron 2 of 11)	7871	NM_001287755	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
116756	chr19	18483471	18483850	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	38410	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
68909	chr14	91357371	91357530	+	0	NA	intron (NM_001080414, intron 4 of 29)	AluJb|SINE|Alu	60370	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
42842	chr11	73140321	73140780	+	0	NA	intron (NM_014824, intron 1 of 19)	intron (NM_014824, intron 1 of 19)	1768	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
190699	chr6	209321	210180	+	0	NA	Intergenic	Intergenic	-4266	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
166289	chr3	112518921	112519650	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-19813	NM_001085357	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
23421	chr1	228391521	228391780	+	0	NA	Intergenic	Intergenic	5459	NR_106800	102465444		NR_106800	ENSG00000284311	MIR6742	hsa-mir-6742	microRNA 6742	ncRNA
5720	chr1	26401151	26401250	+	0	NA	Intergenic	AluJr|SINE|Alu	-9617	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
71147	chr14	105006571	105006730	+	0	NA	Intergenic	Intergenic	14433	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
64888	chr14	35388121	35389080	+	0	NA	Intergenic	Intergenic	16149	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
160461	chr3	30353851	30354750	+	0	NA	Intergenic	Intergenic	-164568	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
135427	chr2	161162171	161162330	+	0	NA	intron (NM_001199135, intron 1 of 7)	L1MD|LINE|L1	1822	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
17035	chr1	156072471	156072830	+	0	NA	3' UTR (NM_001093725, exon 2 of 2)	3' UTR (NM_001093725, exon 2 of 2)	9815	NM_001093725	92312		NM_001093725	ENSG00000254726	MEX3A	MEX-3A|RKHD4|RNF162	mex-3 RNA binding family member A	protein-coding
205429	chr7	16734851	16735150	+	0	NA	Intergenic	AluYj4|SINE|Alu	-18755	NM_014399	27075		NM_014399	ENSG00000106537	TSPAN13	NET-6|NET6|TM4SF13	tetraspanin 13	protein-coding
117146	chr19	19316321	19316980	+	0	NA	intron (NM_172231, intron 1 of 13)	intron (NM_172231, intron 1 of 13)	3859	NM_172231	57794		NM_021164	ENSG00000105705	SUGP1	F23858|RBP|SF4	SURP and G-patch domain containing 1	protein-coding
174890	chr4	48903551	48903850	+	0	NA	intron (NM_001014446, intron 2 of 6)	AluY|SINE|Alu	3074	NM_001014446	132299		NM_152398	ENSG00000145247	OCIAD2	-	OCIA domain containing 2	protein-coding
175331	chr4	68348671	68348830	+	0	NA	intron (NM_001031732, intron 1 of 16)	intron (NM_001031732, intron 1 of 16)	1340	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
217640	chr8	30067251	30067550	+	0	NA	intron (NM_016127, intron 3 of 5)	L1ME3A|LINE|L1	15664	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
140112	chr2	231485001	231485200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-20616	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
64181	chr14	22978851	22979780	+	0	NA	intron (NM_001289097, intron 1 of 1)	intron (NM_001289097, intron 1 of 1)	-2473	NM_198086	84962		NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
44578	chr11	108241271	108241910	+	0	NA	intron (NM_000051, intron 5 of 62)	Tigger3b|DNA|TcMar-Tigger	18061	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
62598	chr13	100203321	100204200	+	0	NA	intron (NM_001352611, intron 6 of 21)	HAL1M8|LINE|L1	114667	NR_148027	5095		NM_000282	ENSG00000175198	PCCA	-	propionyl-CoA carboxylase subunit alpha	protein-coding
196333	chr6	43167721	43167980	+	0	NA	Intergenic	AluSz|SINE|Alu	-3419	NM_003131	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
183752	chr5	81506971	81507200	+	0	NA	intron (NM_001256734, intron 4 of 15)	intron (NM_001256734, intron 4 of 15)	-112951	NM_130767	134526		NM_130767	ENSG00000172497	ACOT12	CACH-1|Cach|STARD15|THEAL	acyl-CoA thioesterase 12	protein-coding
38187	chr11	36373721	36374180	+	0	NA	intron (NM_001160167, intron 1 of 8)	L2a|LINE|L2	-2035	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
48119	chr12	7876071	7876430	+	0	NA	intron (NM_001286237, intron 1 of 9)	AluSz|SINE|Alu	-3335	NM_001286234	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
202827	chr6	159724401	159724780	+	0	NA	intron (NM_001322817, intron 3 of 7)	AluJb|SINE|Alu	2360	NM_001322820	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
184232	chr5	96613971	96614530	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-47787	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
132829	chr2	110578371	110578530	+	0	NA	intron (NM_032260, intron 1 of 19).2	intron (NM_032260, intron 1 of 19).2	282	NM_032260	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
114454	chr19	12719551	12719650	+	0	NA	intron (NM_001382240, intron 3 of 25)	AluSx3|SINE|Alu	2659	NM_001382242	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
160790	chr3	32959221	32959830	+	0	NA	Intergenic	Intergenic	7881	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
124401	chr19	58404871	58406000	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3214	NM_173548	201514		NM_173548	ENSG00000171574	ZNF584	-	zinc finger protein 584	protein-coding
90467	chr17	1385771	1385930	+	0	NA	intron (NR_024058, intron 1 of 6)	SVA_D|Retroposon|SVA	14372	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
11200	chr1	88660871	88662000	+	0	NA	intron (NR_110682, intron 1 of 3)	intron (NR_110682, intron 1 of 3)	-22709	NM_001320707	5586		NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
200549	chr6	136266321	136266600	+	0	NA	intron (NM_001363659, intron 10 of 11)	intron (NM_001363659, intron 10 of 11)	-16149	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
130547	chr2	85691721	85692580	+	0	NA	Intergenic	Intergenic	-2208	NM_012483	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
154062	chr22	30634171	30635000	+	0	NA	Intergenic	Intergenic	-1196	NM_001318371	339665		NM_001001479	ENSG00000100036	SLC35E4	-	solute carrier family 35 member E4	protein-coding
39056	chr11	47934151	47935430	+	0	NA	Intergenic	MIRc|SINE|MIR	-45769	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
81735	chr16	11343901	11344430	+	0	NA	intron (NR_135174, intron 1 of 1)	AluY|SINE|Alu	1047	NR_135174	105371083		NR_135174	ENSG00000263080	LOC105371083	-	uncharacterized LOC105371083	ncRNA
153552	chr22	26598651	26598950	+	0	NA	TTS (NM_001887)	TTS (NM_001887)	-8668	NM_001362922	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
24239	chr1	236162851	236163150	+	0	NA	intron (NM_003272, intron 1 of 6)	THE1A-int|LTR|ERVL-MaLR	20461	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
87149	chr16	69253671	69254080	+	0	NA	intron (NM_006750, intron 2 of 6)	intron (NM_006750, intron 2 of 6)	-57475	NM_013245	27183		NM_013245	ENSG00000132612	VPS4A	CIMDAG|SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
204325	chr7	2715871	2716580	+	0	NA	3' UTR (NM_133463, exon 7 of 7)	3' UTR (NM_133463, exon 7 of 7)	28023	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
229803	chr9	125409321	125409600	+	0	NA	Intergenic	Intergenic	147634	NM_001354295	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
192695	chr6	26288051	26288150	+	0	NA	Intergenic	LTR3|LTR|ERVK	-2566	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
4631	chr1	22117521	22117780	+	0	NA	3' UTR (NM_030761, exon 5 of 5)	3' UTR (NM_030761, exon 5 of 5)	25447	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
101726	chr17	68771901	68772130	+	0	NA	Intergenic	Intergenic	143861	NR_110825	101928104		NR_110825	ENSG00000267659	LINC01482	-	long intergenic non-protein coding RNA 1482	ncRNA
149524	chr21	32932021	32933330	+	0	NA	Intergenic	Intergenic	-26213	NR_135522	102724502		NR_135522	ENSG00000228961	LINC01690	-	long intergenic non-protein coding RNA 1690	ncRNA
36078	chr11	2990551	2991280	+	0	NA	5' UTR (NM_001369388, exon 1 of 16).2	5' UTR (NM_001369388, exon 1 of 16).2	188	NM_001369379	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
185674	chr5	131634351	131636250	+	0	NA	promoter-TSS (NM_001164386)	promoter-TSS (NM_001164386)	-71	NM_016340	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
82703	chr16	20798421	20798680	+	0	NA	TTS (NM_005622)	TTS (NM_005622)	7922	NM_080663	112479		NM_080663	ENSG00000196678	ERI2	EXOD1|ZGRF5	ERI1 exoribonuclease family member 2	protein-coding
91782	chr17	7009801	7010280	+	0	NA	exon (NM_000697, exon 13 of 14)	exon (NM_000697, exon 13 of 14)	2294	NR_040089	100506713		NR_040089	ENSG00000215067	ALOX12-AS1	-	ALOX12 antisense RNA 1	ncRNA
28809	chr10	62235621	62235880	+	0	NA	intron (NM_145307, intron 6 of 11)	Tigger4b|DNA|TcMar-Tigger	33094	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
72969	chr15	40564201	40565900	+	0	NA	promoter-TSS (NM_001382436)	promoter-TSS (NM_001382436)	-8	NM_001382437	90416		NM_052849	ENSG00000128891	CCDC32	C15orf57|CFNDS	coiled-coil domain containing 32	protein-coding
24988	chr10	3106301	3106750	+	0	NA	intron (NM_001345944, intron 7 of 21)	intron (NM_001345944, intron 7 of 21)	1916	NM_001323073	5214		NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
203794	chr7	1249851	1250380	+	0	NA	Intergenic	Intergenic	17243	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
130825	chr2	87067651	87068150	+	0	NA	intron (NR_026846, intron 1 of 10)	AluSc8|SINE|Alu	8513	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
196039	chr6	42042971	42043130	+	0	NA	intron (NM_001287434, intron 1 of 4)	MIR|SINE|MIR	5844	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
202545	chr6	158641801	158642000	+	0	NA	intron (NM_006519, intron 1 of 4)	intron (NM_006519, intron 1 of 4)	2843	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
37488	chr11	18397971	18398130	+	0	NA	intron (NR_028500, intron 2 of 6)	intron (NR_028500, intron 2 of 6)	1784	NM_001165414	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
61352	chr13	50915321	50916000	+	0	NA	intron (NM_001142279, intron 1 of 9)	intron (NM_001142279, intron 1 of 9)	-4948	NR_046552	100874255		NR_046552		RNASEH2B-AS1	-	RNASEH2B antisense RNA 1	ncRNA
185773	chr5	132386521	132387130	+	0	NA	intron (NM_003060, intron 4 of 9)	intron (NM_003060, intron 4 of 9)	-16909	NR_110997	553103		NR_110997	ENSG00000233006	MIR3936HG	SLC22A5-AS1	MIR3936 host gene	ncRNA
138120	chr2	202289601	202289800	+	0	NA	intron (NM_015934, intron 6 of 14)	L1MB4|LINE|L1	-1617	NR_003694	100113392		NR_003694	ENSG00000271852	SNORD11B	-	small nucleolar RNA, C/D box 11B	snoRNA
146620	chr20	50170551	50171330	+	0	NA	Intergenic	Intergenic	-1630	NR_109943	101927541		NR_109943	ENSG00000231742	LINC01273	-	long intergenic non-protein coding RNA 1273	ncRNA
56486	chr12	116236151	116236600	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	41318	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
238626	chrX	153955671	153957600	+	0	NA	exon (NM_005334, exon 15 of 26)	exon (NM_005334, exon 15 of 26)	-11992	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
1856	chr1	6359501	6360500	+	0	NA	intron (NM_007274, intron 1 of 8)	intron (NM_007274, intron 1 of 8)	714	NM_181865	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
177872	chr4	128633121	128633380	+	0	NA	Intergenic	Intergenic	-176450	NM_199320	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
57283	chr12	121637171	121638000	+	0	NA	intron (NM_032790, intron 2 of 2)	intron (NM_032790, intron 2 of 2)	11035	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
145241	chr20	38931721	38932400	+	0	NA	intron (NM_030919, intron 1 of 3)	MamRep137|DNA|TcMar-Tigger	5643	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
70380	chr14	101917621	101918550	+	0	NA	intron (NM_002719, intron 13 of 13)	intron (NM_002719, intron 13 of 13)	-46488	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
74132	chr15	55237721	55238780	+	0	NA	intron (NM_183236, intron 2 of 6)	intron (NM_183236, intron 2 of 6)	32036	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
49522	chr12	25436251	25436550	+	0	NA	Intergenic	Intergenic	116883	NM_001256266	160492		NM_152590	ENSG00000152936	LMNTD1	IFLTD1|LMNARS1|PAS1C1	lamin tail domain containing 1	protein-coding
13438	chr1	114344701	114345180	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	166263	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
232844	chr9	136767871	136768030	+	0	NA	Intergenic	L1ME1|LINE|L1	-3432	NM_203347	389812		NM_203347	ENSG00000177984	LCN15	PRO6093|UNQ2541	lipocalin 15	protein-coding
112226	chr19	5709021	5709280	+	0	NA	intron (NR_076392, intron 5 of 18)	FRAM|SINE|Alu	10996	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
54369	chr12	89752371	89752730	+	0	NA	Intergenic	Intergenic	-43184	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
193543	chr6	30606471	30606630	+	0	NA	non-coding (NR_072994, exon 8 of 20).7	non-coding (NR_072994, exon 8 of 20).7	10693	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
100524	chr17	62472471	62472630	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5261	NM_001375271	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
165607	chr3	101679121	101680030	+	0	NA	TTS (NR_024407)	TTS (NR_024407)	-2443	NM_014415	27107		NM_014415	ENSG00000066422	ZBTB11	MRT69|ZNF-U69274|ZNF913	zinc finger and BTB domain containing 11	protein-coding
57076	chr12	121021021	121021480	+	0	NA	intron (NM_001261825, intron 3 of 3)	MIR|SINE|MIR	-4763	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
91991	chr17	7433751	7434180	+	0	NA	Intergenic	Intergenic	-1470	NM_178518	284114		NM_178518	ENSG00000181284	TMEM102	CBAP|D2B	transmembrane protein 102	protein-coding
20088	chr1	186392001	186392400	+	0	NA	intron (NM_001164245, intron 8 of 12)	L1PA13|LINE|L1	16362	NM_017847	54953		NM_017847	ENSG00000157181	ODR4	C1orf27|TTG1|odr-4	odr-4 GPCR localization factor homolog	protein-coding
95999	chr17	39206421	39207380	+	0	NA	Intergenic	AluJb|SINE|Alu	6577	NM_001330200	6143		NM_000981	ENSG00000108298	RPL19	L19|eL19	ribosomal protein L19	protein-coding
217968	chr8	38340421	38340680	+	0	NA	intron (NM_017778, intron 2 of 9)	AluSx|SINE|Alu	41721	NM_023034	54904		NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding
203693	chr7	1031971	1032130	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	-3618	NR_146965	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
200988	chr6	139379001	139379400	+	0	NA	Intergenic	AluJb|SINE|Alu	-4552	NM_006079	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
45601	chr11	118898721	118898980	+	0	NA	non-coding (NR_165445, exon 7 of 7)	non-coding (NR_165445, exon 7 of 7)	5458	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
21786	chr1	206944651	206945750	+	0	NA	intron (NM_002644, intron 1 of 10)	intron (NM_002644, intron 1 of 10)	1266	NM_002644	5284		NM_002644	ENSG00000162896	PIGR	-	polymeric immunoglobulin receptor	protein-coding
41609	chr11	66410101	66411300	+	0	NA	Intergenic	Intergenic	-10304	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
155240	chr22	37933771	37934550	+	0	NA	intron (NM_033386, intron 13 of 15)	intron (NM_033386, intron 13 of 15)	19441	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
105444	chr17	82970501	82970700	+	0	NA	intron (NR_135465, intron 6 of 13)	intron (NR_135465, intron 6 of 13)	36388	NR_135466	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
66764	chr14	64530221	64530630	+	0	NA	intron (NM_014950, intron 2 of 2)	AluSx3|SINE|Alu	9943	NR_110550	102723809		NR_110550	ENSG00000259116	HSPA2-AS1	-	HSPA2 and ZBTB1 antisense RNA 1	ncRNA
165957	chr3	107741151	107741550	+	0	NA	intron (NM_020235, intron 7 of 16)	intron (NM_020235, intron 7 of 16)	136718	NR_024276	151658		NR_015414	ENSG00000241469	LINC00635	-	long intergenic non-protein coding RNA 635	ncRNA
156621	chr22	41587751	41588100	+	0	NA	intron (NM_002676, intron 1 of 7)	intron (NM_002676, intron 1 of 7)	1915	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
52080	chr12	54051121	54051850	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	-2350	NM_153633	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
200576	chr6	136291771	136292000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2034	NM_001077440	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
97630	chr17	44182901	44183100	+	0	NA	non-coding (NR_049729, exon 2 of 4)	non-coding (NR_049729, exon 2 of 4)	3717	NR_049730	339201		NM_178542	ENSG00000267080	ASB16-AS1	C17orf65	ASB16 antisense RNA 1	ncRNA
212274	chr7	123580871	123581100	+	0	NA	intron (NR_111926, intron 3 of 7)	intron (NR_111926, intron 3 of 7)	20666	NR_111926	4698		NM_005000	ENSG00000128609	NDUFA5	B13|CI-13KD-B|CI-13kB|NUFM|UQOR13	NADH:ubiquinone oxidoreductase subunit A5	protein-coding
145823	chr20	45782651	45783180	+	0	NA	intron (NM_080614, intron 4 of 6)	L2a|LINE|L2	8968	NM_080614	140686		NM_080614	ENSG00000124116	WFDC3	WAP14|dJ447F3.3	WAP four-disulfide core domain 3	protein-coding
209648	chr7	77800971	77801800	+	0	NA	intron (NM_001366086, intron 1 of 17)	AluSx|SINE|Alu	2414	NM_001366087	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
121222	chr19	46624801	46625600	+	0	NA	promoter-TSS (NM_000960)	promoter-TSS (NM_000960)	-111	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
2017	chr1	6969121	6969380	+	0	NA	intron (NM_001349608, intron 2 of 21)	intron (NM_001349608, intron 2 of 21)	183796	NM_001349609	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
138674	chr2	213015671	213016680	+	0	NA	intron (NM_001371276, intron 6 of 7)	MIR|SINE|MIR	-89839	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
105050	chr17	82067351	82067650	+	0	NA	Intergenic	L1M4a2|LINE|L1	-1696	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
225504	chr9	35664521	35665780	+	0	NA	promoter-TSS (NM_032818)	promoter-TSS (NM_032818)	45	NM_032818	84904		NM_032818	ENSG00000137135	ARHGEF39	C9orf100	Rho guanine nucleotide exchange factor 39	protein-coding
215551	chr7	158797301	158797680	+	0	NA	intron (NM_020728, intron 3 of 21)	FLAM_A|SINE|Alu	32019	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
146174	chr20	48745301	48745580	+	0	NA	intron (NM_020820, intron 2 of 39)	MIRb|SINE|MIR	82559	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
53242	chr12	62492371	62492550	+	0	NA	intron (NM_001278472, intron 3 of 35)	AluYb8|SINE|Alu	25634	NM_015026	23041		NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
201673	chr6	149510671	149510830	+	0	NA	intron (NM_139126, intron 12 of 12)	AluSq2|SINE|Alu	-25736	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
21053	chr1	203272871	203274580	+	0	NA	Intergenic	Intergenic	-13427	NR_117097	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
115262	chr19	14538921	14539180	+	0	NA	intron (NM_138501, intron 1 of 12)	AluY|SINE|Alu	9456	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
12310	chr1	100928301	100928600	+	0	NA	intron (NM_133496, intron 8 of 10)	intron (NM_133496, intron 8 of 10)	32360	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
39128	chr11	48172671	48173180	+	0	NA	Intergenic	Intergenic	-43885	NM_001005470	119765		NM_001005470	ENSG00000175619	OR4B1	OR11-106|OST208	olfactory receptor family 4 subfamily B member 1	protein-coding
129233	chr2	68255351	68255930	+	0	NA	Intergenic	Intergenic	-3108	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
141755	chr2	241927971	241928330	+	0	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	-25565	NM_001382369	285095		NM_001382368	ENSG00000216921	FAM240C	-	family with sequence similarity 240 member C	protein-coding
160338	chr3	27714801	27715750	+	0	NA	TTS (NM_005442)	TTS (NM_005442)	7048	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
54167	chr12	76765671	76766350	+	0	NA	intron (NM_015336, intron 1 of 16)	intron (NM_015336, intron 1 of 16)	1752	NM_001359626	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
23509	chr1	228791071	228791250	+	0	NA	Intergenic	Intergenic	55681	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
117179	chr19	19355201	19356180	+	0	NA	intron (NM_015329, intron 18 of 18)	intron (NM_015329, intron 18 of 18)	-30153	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
47684	chr12	6363101	6364450	+	0	NA	intron (NM_001159575, intron 2 of 12)	CpG-5265	-11385	NM_001270987	4055		NM_002342	ENSG00000111321	LTBR	D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	lymphotoxin beta receptor	protein-coding
128923	chr2	64375571	64376130	+	0	NA	Intergenic	Intergenic	-35002	NR_106995	102465833		NR_106995	ENSG00000264297	MIR4433B	hsa-mir-4433b	microRNA 4433b	ncRNA
39821	chr11	62033771	62033930	+	0	NA	Intergenic	Intergenic	-66216	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
175468	chr4	73019571	73019750	+	0	NA	Intergenic	Intergenic	50056	NM_173827	285521		NM_173827	ENSG00000163626	COX18	COX18HS|OXA1L2	cytochrome c oxidase assembly factor COX18	protein-coding
137448	chr2	196982101	196982300	+	0	NA	Intergenic	MER65B|LTR|ERV1	-55493	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
236378	chrX	71072951	71073050	+	0	NA	intron (NM_001256185, intron 1 of 4)	intron (NM_001256185, intron 1 of 4)	426	NM_001256185	29934		NM_013346	ENSG00000147164	SNX12	-	sorting nexin 12	protein-coding
68136	chr14	75531221	75531800	+	0	NA	intron (NM_006399, intron 2 of 2)	intron (NM_006399, intron 2 of 2)	9041	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
143183	chr20	24406821	24407080	+	0	NA	Intergenic	Intergenic	-62249	NM_001323606	79953		NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding
103318	chr17	77916621	77917180	+	0	NA	Intergenic	Intergenic	-32813	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
199598	chr6	119257001	119257200	+	0	NA	intron (NM_005907, intron 5 of 12)	intron (NM_005907, intron 5 of 12)	92661	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
27527	chr10	32312271	32312880	+	0	NA	intron (NR_168508, intron 1 of 12)	L2a|LINE|L2	34583	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
1461	chr1	2671851	2672250	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-39034	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
85067	chr16	32115771	32116900	+	0	NA	Intergenic	CpG	71778	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
1386	chr1	2537571	2537730	+	0	NA	Intergenic	Intergenic	-7387	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
201774	chr6	149958771	149959250	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-4933	NM_001317089	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
55427	chr12	104507721	104508200	+	0	NA	intron (NM_018413, intron 1 of 2)	MLT1H|LTR|ERVL-MaLR	51012	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
185120	chr5	119285351	119285900	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	16866	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
138773	chr2	216011521	216011900	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	1841	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
190970	chr6	2966421	2966680	+	0	NA	intron (NM_001297700, intron 1 of 6)	MER1B|DNA|hAT-Charlie	4173	NM_001374516	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
139856	chr2	230575421	230576180	+	0	NA	Intergenic	Intergenic	124729	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
2122	chr1	8217021	8217930	+	0	NA	Intergenic	CpG	8803	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
118721	chr19	38233501	38234500	+	0	NA	Intergenic	Intergenic	-4286	NM_001135156	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
153635	chr22	28770751	28770850	+	0	NA	Intergenic	AluYh3|SINE|Alu	-1874	NM_001284263	150275		NM_173510	ENSG00000159873	CCDC117	dJ366L4.1	coiled-coil domain containing 117	protein-coding
5964	chr1	26904771	26904930	+	0	NA	Intergenic	MER34D|LTR|ERV1	-4383	NM_022078	63906		NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
122405	chr19	49439151	49439580	+	0	NA	intron (NM_020309, intron 1 of 11)	intron (NM_020309, intron 1 of 11)	2162	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
15903	chr1	151606301	151606830	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-5485	NM_001330723	81609		NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin 27	protein-coding
41470	chr11	66134251	66135100	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	64403	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
112077	chr19	5330051	5330350	+	0	NA	intron (NM_130853, intron 1 of 28)	MER45A|DNA|hAT-Tip100	10612	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
3618	chr1	16369051	16369150	+	0	NA	intron (NR_073500, intron 1 of 1)	intron (NR_073500, intron 1 of 1)	1858	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
207745	chr7	48097501	48098630	+	0	NA	intron (NM_001287429, intron 3 of 5)	intron (NM_001287429, intron 3 of 5)	8800	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
170435	chr3	185900551	185900850	+	0	NA	Intergenic	AluSp|SINE|Alu	37314	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
18926	chr1	168457301	168457500	+	0	NA	Intergenic	LTR14C|LTR|ERVK	-34744	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
183880	chr5	87282101	87282930	+	0	NA	intron (NM_022650, intron 1 of 24)	L1MDa|LINE|L1	13578	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
206155	chr7	27921251	27921500	+	0	NA	intron (NM_175061, intron 2 of 4)	intron (NM_175061, intron 2 of 4)	181280	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
60513	chr13	41347921	41348380	+	0	NA	intron (NM_024561, intron 9 of 19)	L1MB8|LINE|L1	-36112	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
39783	chr11	61948951	61949950	+	0	NA	promoter-TSS (NM_004183)	promoter-TSS (NM_004183)	-371	NM_001363592	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
168122	chr3	138832751	138832850	+	0	NA	intron (NM_006219, intron 1 of 23)	AluSp|SINE|Alu	2128	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
79940	chr16	1759251	1760030	+	0	NA	intron (NM_001318852, intron 10 of 31)	intron (NM_001318852, intron 10 of 31)	12069	NM_002513	4832		NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
165365	chr3	93135721	93136200	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	837936	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
87347	chr16	70348571	70349130	+	0	NA	intron (NM_018332, intron 1 of 11)	AluJb|SINE|Alu	1947	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
221947	chr8	129924971	129925130	+	0	NA	intron (NM_001353279, intron 2 of 13)	intron (NM_001353279, intron 2 of 13)	14761	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
77061	chr15	78880451	78880550	+	0	NA	intron (NM_206839, intron 2 of 12)	intron (NM_206839, intron 2 of 12)	7511	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
175837	chr4	78612521	78612780	+	0	NA	Intergenic	Intergenic	-33344	NR_038308	100505702		NR_038303		LINC01094	CTEPHA1	long intergenic non-protein coding RNA 1094	ncRNA
84499	chr16	30496971	30497330	+	0	NA	intron (NM_002209, intron 15 of 30)	AluY|SINE|Alu	-6769	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
204541	chr7	4959901	4960430	+	0	NA	promoter-TSS (NR_072989)	promoter-TSS (NR_072989)	-978	NM_001270375	221938		NM_198403	ENSG00000136297	MMD2	PAQR10	monocyte to macrophage differentiation associated 2	protein-coding
114040	chr19	10957821	10958080	+	0	NA	Intergenic	AluJb|SINE|Alu	-3080	NM_001374457	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
56260	chr12	112005921	112006380	+	0	NA	intron (NM_138341, intron 1 of 9)	intron (NM_138341, intron 1 of 9)	7015	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
48317	chr12	9008501	9008900	+	0	NA	intron (NM_005810, intron 3 of 4)	MLT1A|LTR|ERVL-MaLR	19075	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
168297	chr3	141524551	141524650	+	0	NA	intron (NM_006506, intron 3 of 23)	AluSx3|SINE|Alu	37573	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
6074	chr1	27152971	27153200	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	2040	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
120409	chr19	43782371	43783250	+	0	NA	Intergenic	Intergenic	-1837	NM_002250	3783		NM_002250	ENSG00000104783	KCNN4	DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium calcium-activated channel subfamily N member 4	protein-coding
38389	chr11	44861671	44862950	+	0	NA	intron (NM_130783, intron 3 of 9)	Charlie15b|DNA|hAT-Charlie	87850	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
202321	chr6	157312251	157312350	+	0	NA	intron (NM_018452, intron 3 of 3)	intron (NM_018452, intron 3 of 3)	11219	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
228322	chr9	98255291	98256530	+	0	NA	promoter-TSS (NR_051978)	promoter-TSS (NR_051978)	-261	NM_001267571	55357		NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
233522	chrX	10101	10530	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-266041	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
164469	chr3	59886001	59886400	+	0	NA	intron (NM_001354590, intron 7 of 8)	intron (NM_001354590, intron 7 of 8)	194709	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
203288	chr6	169831601	169832000	+	0	NA	Intergenic	Intergenic	-32975	NR_026781	401288		NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
225165	chr9	33822151	33822450	+	0	NA	intron (NM_017811, intron 1 of 4)	AluSp|SINE|Alu	5140	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
194691	chr6	33688701	33688980	+	0	NA	intron (NM_002224, intron 49 of 57)	intron (NM_002224, intron 49 of 57)	-9288	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
82226	chr16	15028801	15029330	+	0	NA	3' UTR (NM_001285450, exon 14 of 14).2	3' UTR (NM_001285450, exon 14 of 14).2	-18668	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
32541	chr10	103194351	103194950	+	0	NA	Intergenic	AluSz|SINE|Alu	-1344	NM_001351197	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
211125	chr7	102529571	102529930	+	0	NA	Intergenic	AluSx|SINE|Alu	-11973	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
34172	chr10	128096801	128097180	+	0	NA	3' UTR (NM_002417, exon 15 of 15)	3' UTR (NM_002417, exon 15 of 15)	29433	NM_002417	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
167416	chr3	129013501	129014550	+	0	NA	TTS (NM_001377501)	TTS (NM_001377501)	-10023	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
172439	chr4	1877571	1878000	+	0	NA	intron (NM_001042424, intron 1 of 21)	L2a|LINE|L2	6392	NM_001042424	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
159874	chr3	16828751	16829100	+	0	NA	Intergenic	Intergenic	-56030	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
71349	chr14	105466221	105467080	+	0	NA	intron (NM_001203258, intron 17 of 20)	CpG	-6295	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
75341	chr15	65396671	65396980	+	0	NA	intron (NM_020962, intron 6 of 19)	CpG	-18823	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
56295	chr12	112401551	112401650	+	0	NA	Intergenic	AluY|SINE|Alu	7685	NM_001320139	6128		NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1|eL6	ribosomal protein L6	protein-coding
209960	chr7	92682721	92683700	+	0	NA	intron (NM_001145306, intron 4 of 7)	intron (NM_001145306, intron 4 of 7)	-92820	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
26330	chr10	15148271	15148430	+	0	NA	intron (NM_004808, intron 1 of 11)	AluJr|SINE|Alu	6997	NR_036506	100192204		NR_036506	ENSG00000206448	PPIAP30	-	peptidylprolyl isomerase A pseudogene 30	pseudo
126060	chr2	25664551	25665000	+	0	NA	intron (NM_001351381, intron 1 of 18)	MIRb|SINE|MIR	8802	NM_001351391	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
16567	chr1	154985951	154986250	+	0	NA	intron (NM_025207, intron 1 of 6)	AluSz6|SINE|Alu	2756	NM_001184891	80308		NM_025207	ENSG00000160688	FLAD1	FAD1|FADS|LSMFLAD|PP591	flavin adenine dinucleotide synthetase 1	protein-coding
158906	chr3	9951201	9951400	+	0	NA	intron (NM_207351, intron 1 of 3)	intron (NM_207351, intron 1 of 3)	1108	NM_207351	285368		NM_207351	ENSG00000163704	PRRT3	-	proline rich transmembrane protein 3	protein-coding
130792	chr2	86857851	86858430	+	0	NA	exon (NM_004931, exon 2 of 6)	exon (NM_004931, exon 2 of 6)	-3685	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
188427	chr5	154236651	154236950	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	46067	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
236651	chrX	75276601	75277000	+	0	NA	intron (NR_030774, intron 1 of 7)	L1MB8|LINE|L1	2715	NM_145052	139596		NM_145052	ENSG00000094841	UPRT	FUR1|UPP	uracil phosphoribosyltransferase homolog	protein-coding
36103	chr11	3051951	3052450	+	0	NA	intron (NR_165428, intron 1 of 22)	intron (NR_165428, intron 1 of 22)	5223	NM_001751	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
76038	chr15	72225271	72225700	+	0	NA	intron (NM_001206798, intron 1 of 10)	intron (NM_001206798, intron 1 of 10)	4426	NM_001206799	5315		NM_002654	ENSG00000067225	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1|p58	pyruvate kinase M1/2	protein-coding
119259	chr19	39506771	39507930	+	0	NA	exon (NM_203486, exon 7 of 9)	exon (NM_203486, exon 7 of 9)	-7763	NM_182704	348303		NM_182704	ENSG00000186838	SELENOV	SELV	selenoprotein V	protein-coding
1598	chr1	3624271	3625680	+	0	NA	promoter-TSS (NM_182752)	promoter-TSS (NM_182752)	-40	NM_182752	127262		NM_182752	ENSG00000158109	TPRG1L	FAM79A|SVAP30|TPRGL|h-mover|mover	tumor protein p63 regulated 1 like	protein-coding
169786	chr3	172752601	172753180	+	0	NA	intron (NM_001349100, intron 2 of 25)	intron (NM_001349100, intron 2 of 25)	1888	NM_001349096	1894		NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding
154178	chr22	31328051	31328150	+	0	NA	intron (NM_032050, intron 3 of 3)	intron (NM_032050, intron 3 of 3)	-7249	NR_110542	101929760		NR_110542	ENSG00000228839	PIK3IP1-DT	PIK3IP1-AS1	PIK3IP1 divergent transcript	ncRNA
158656	chr3	5019401	5020680	+	0	NA	Intergenic	Intergenic	-40079	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
80572	chr16	2857251	2857730	+	0	NA	intron (NM_022119, intron 1 of 5)	intron (NM_022119, intron 1 of 5)	680	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
3970	chr1	18818321	18818580	+	0	NA	Intergenic	Intergenic	41210	NM_152232	80834		NM_152232	ENSG00000179002	TAS1R2	GPR71|T1R2|TR2	taste 1 receptor member 2	protein-coding
121197	chr19	46546521	46546880	+	0	NA	intron (NM_001370550, intron 1 of 2)	MLT1J2|LTR|ERVL-MaLR	-50833	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
199566	chr6	118894601	118895430	+	0	NA	exon (NM_001378365, exon 8 of 8)	exon (NM_001378365, exon 8 of 8)	863	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
146402	chr20	49319971	49320130	+	0	NA	Intergenic	Intergenic	39367	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
191290	chr6	6592821	6593430	+	0	NA	intron (NM_004271, intron 1 of 4)	MLT1D|LTR|ERVL-MaLR	4405	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
93217	chr17	17831251	17831500	+	0	NA	intron (NM_001005291, intron 1 of 19)	intron (NM_001005291, intron 1 of 19)	5611	NM_001005291	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
113508	chr19	10101701	10103050	+	0	NA	intron (NM_031917, intron 1 of 5)	intron (NM_031917, intron 1 of 5)	282	NM_001321411	83854		NM_031917	ENSG00000130812	ANGPTL6	AGF|ARP5	angiopoietin like 6	protein-coding
236901	chrX	85955651	85955750	+	0	NA	intron (NM_001320959, intron 8 of 14)	L1ME3F|LINE|L1	-51993	NR_029848	494323		NR_029848	ENSG00000199051	MIR361	MIRN361|hsa-mir-361|mir-361	microRNA 361	ncRNA
175496	chr4	73256971	73257770	+	0	NA	intron (NM_032217, intron 1 of 33)	intron (NM_032217, intron 1 of 33)	1428	NM_015574	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
220138	chr8	94860671	94861030	+	0	NA	intron (NM_017864, intron 16 of 26)	AluY|SINE|Alu	34404	NM_057749	9134		NM_004702	ENSG00000175305	CCNE2	CYCE2	cyclin E2	protein-coding
176933	chr4	102849671	102849830	+	0	NA	intron (NM_181890, intron 1 of 7)	L1ME3|LINE|L1	19143	NM_181893	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
84563	chr16	30607321	30608250	+	0	NA	intron (NM_138447, intron 2 of 2)	AluSx1|SINE|Alu	2043	NR_104166	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
208793	chr7	73592921	73593700	+	0	NA	non-coding (NR_134541, exon 16 of 16)	non-coding (NR_134541, exon 16 of 16)	-14731	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
131794	chr2	98508301	98509380	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	62830	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
112142	chr19	5614671	5615030	+	0	NA	intron (NM_014649, intron 4 of 20)	intron (NM_014649, intron 4 of 20)	7926	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
116635	chr19	18306571	18306730	+	0	NA	3' UTR (NM_012321, exon 5 of 5)	3' UTR (NM_012321, exon 5 of 5)	16426	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
58511	chr12	132178621	132179630	+	0	NA	Intergenic	CpG	10570	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
217947	chr8	38171471	38172280	+	0	NA	intron (NM_014462, intron 2 of 3)	intron (NM_014462, intron 2 of 3)	4618	NM_014462	27257		NM_014462	ENSG00000175324	LSM1	CASM|YJL124C	LSM1 homolog, mRNA degradation associated	protein-coding
19060	chr1	169892021	169892280	+	0	NA	intron (NM_181093, intron 1 of 13)	intron (NM_181093, intron 1 of 13)	1746	NM_020423	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
233726	chrX	1356751	1357050	+	0	NA	intron (NM_001267713, intron 5 of 9).2	intron (NM_001267713, intron 5 of 9).2	20115	NM_002183	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
214481	chr7	150378521	150380300	+	0	NA	promoter-TSS (NM_173680)	promoter-TSS (NM_173680)	80	NM_173680	285971		NM_173680	ENSG00000196456	ZNF775	-	zinc finger protein 775	protein-coding
162741	chr3	49045671	49046030	+	0	NA	intron (NM_001320580, intron 6 of 10)	AluJb|SINE|Alu	-16452	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
97915	chr17	45138621	45139330	+	0	NA	intron (NM_001378111, intron 7 of 8)	intron (NM_001378111, intron 7 of 8)	3288	NM_001135707	79777		NM_024722	ENSG00000181513	ACBD4	HMFT0700	acyl-CoA binding domain containing 4	protein-coding
112099	chr19	5573371	5573530	+	0	NA	Intergenic	AluJr|SINE|Alu	-5416	NR_027064								
152019	chr22	19429801	19431000	+	0	NA	intron (NM_003325, intron 1 of 24)	intron (NM_003325, intron 1 of 24)	1333	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
22208	chr1	212467951	212469200	+	0	NA	Intergenic	AluSx|SINE|Alu	35655	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
55846	chr12	109094721	109094980	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-1362	NM_001205180	121642		NM_001001655	ENSG00000189046	ALKBH2	ABH2	alkB homolog 2, alpha-ketoglutarate dependent dioxygenase	protein-coding
195931	chr6	41893701	41893900	+	0	NA	intron (NM_001286554, intron 1 of 7)	intron (NM_001286554, intron 1 of 7)	1575	NM_018561	25862		NM_018561	ENSG00000164663	USP49	-	ubiquitin specific peptidase 49	protein-coding
54879	chr12	95656221	95656730	+	0	NA	intron (NR_077225, intron 1 of 4)	AluJr4|SINE|Alu	7220	NR_077225	100132594		NR_077225	ENSG00000293270	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
239016	chrY	2935601	2936600	+	0	NA	intron (NM_001369710, intron 1 of 4)	CpG	719	NM_001369702	7544		NM_003411	ENSG00000067646	ZFY	ZNF911	zinc finger protein Y-linked	protein-coding
227125	chr9	86135471	86135630	+	0	NA	intron (NR_110996, intron 2 of 4)	intron (NR_110996, intron 2 of 4)	8010	NR_110996	101927623		NR_110996		LOC101927623	-	uncharacterized LOC101927623	ncRNA
50200	chr12	46188151	46188450	+	0	NA	3' UTR (NM_001077484, exon 17 of 17)	3' UTR (NM_001077484, exon 17 of 17)	78216	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
19095	chr1	171420901	171421100	+	0	NA	Intergenic	Intergenic	-64530	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
190858	chr6	1786821	1787150	+	0	NA	intron (NM_001253846, intron 7 of 10)	intron (NM_001253846, intron 7 of 10)	177070	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
77303	chr15	82352701	82353430	+	0	NA	Intergenic	Intergenic	-2071	NR_004847	100134869		NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	UBE2Q2 pseudogene 2	pseudo
30163	chr10	74185971	74186130	+	0	NA	intron (NM_001369124, intron 1 of 9)	AluSz|SINE|Alu	9287	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
223976	chr9	2023551	2024650	+	0	NA	intron (NM_001289396, intron 1 of 33)	intron (NM_001289396, intron 1 of 33)	2155	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
144504	chr20	35689201	35689400	+	0	NA	intron (NM_001198989, intron 4 of 11)	AluSx|SINE|Alu	10052	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
132410	chr2	105803401	105804600	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	-47847	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
130596	chr2	85878721	85879180	+	0	NA	intron (NM_001354229, intron 1 of 7)	L2c|LINE|L2	8599	NM_001354238	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
224823	chr9	26944671	26945150	+	0	NA	intron (NM_001321546, intron 1 of 12)	AluSp|SINE|Alu	-2080	NM_001099223	80173		NM_025103	ENSG00000096872	IFT74	BBS22|CCDC2|CMG-1|CMG1|JBTS40|SPGF58	intraflagellar transport 74	protein-coding
98483	chr17	47217021	47217800	+	0	NA	intron (NM_001002841, intron 3 of 7)	AluSz|SINE|Alu	8062	NM_002476	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
209305	chr7	76008621	76009880	+	0	NA	intron (NM_001317787, intron 3 of 6)	intron (NM_001317787, intron 3 of 6)	-14655	NM_031925	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
131693	chr2	97736601	97737200	+	0	NA	intron (NM_207519, intron 2 of 5)	L2a|LINE|L2	3600	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
186708	chr5	138825221	138825500	+	0	NA	intron (NM_001290307, intron 6 of 18)	intron (NM_001290307, intron 6 of 18)	-49870	NM_001324009	1495		NM_001903	ENSG00000044115	CTNNA1	CAP102|MDBS2|MDPT2	catenin alpha 1	protein-coding
208694	chr7	73247051	73247380	+	0	NA	Intergenic	Intergenic	26576	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
45107	chr11	117099851	117101130	+	0	NA	Intergenic	Intergenic	-2062	NM_001366687	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
10507	chr1	66753071	66753230	+	0	NA	intron (NM_152665, intron 1 of 4)	(CA)n|Simple_repeat|Simple_repeat	691	NM_152665	200132		NM_152665	ENSG00000152760	DYNLT5	TCTEX1D1	dynein light chain Tctex-type family member 5	protein-coding
157117	chr22	42644851	42645150	+	0	NA	promoter-TSS (NM_001171660)	promoter-TSS (NM_001171660)	-366	NM_001171660	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
117197	chr19	19372921	19373800	+	0	NA	Intergenic	AluSg|SINE|Alu	-12483	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
125356	chr2	11089551	11089650	+	0	NA	Intergenic	L1MB7|LINE|L1	42576	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
169582	chr3	170860271	170860650	+	0	NA	Intergenic	LTR13|LTR|ERVK	9735	NR_135259	200916		NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22 like 1	protein-coding
198544	chr6	106555051	106555350	+	0	NA	intron (NM_001371242, intron 16 of 21)	AluSx4|SINE|Alu	43345	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
205810	chr7	24441501	24441900	+	0	NA	Intergenic	Intergenic	-131752	NM_016447	51678		NM_016447	ENSG00000105926	PALS2	MPP6|VAM-1|VAM1|p55T	protein associated with LIN7 2, MAGUK p55 family member	protein-coding
36735	chr11	9260571	9261480	+	0	NA	intron (NM_001243254, intron 1 of 22)	AluJo|SINE|Alu	4301	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
49203	chr12	15881621	15882870	+	0	NA	promoter-TSS (NM_007178)	promoter-TSS (NM_007178)	-142	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
81078	chr16	4341001	4341600	+	0	NA	intron (NM_016069, intron 3 of 4)	intron (NM_016069, intron 3 of 4)	10021	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
220249	chr8	97598151	97598450	+	0	NA	Intergenic	Intergenic	-45884	NM_178812	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
80776	chr16	3187271	3188180	+	0	NA	promoter-TSS (NM_001370640)	promoter-TSS (NM_001370640)	-479	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
65917	chr14	55303901	55304400	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	31996	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
199762	chr6	125833451	125833750	+	0	NA	intron (NM_001199621, intron 2 of 14)	(GGGGGA)n|Simple_repeat|Simple_repeat	-14742	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
115036	chr19	14112851	14113200	+	0	NA	intron (NM_002730, intron 1 of 9)	intron (NM_002730, intron 1 of 9)	1166	NM_207518	5566		NM_002730	ENSG00000072062	PRKACA	CAFD1|PKACA|PPNAD4	protein kinase cAMP-activated catalytic subunit alpha	protein-coding
212992	chr7	130992701	130993130	+	0	NA	intron (NR_109855, intron 2 of 4)	AluSz|SINE|Alu	79451	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
106398	chr18	13436371	13437250	+	0	NA	intron (NM_001378099, intron 3 of 6)	intron (NM_001378099, intron 3 of 6)	-9276	NR_040031	100288122		NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
6549	chr1	28645051	28645350	+	0	NA	intron (NR_146730, intron 1 of 1)	AluYk4|SINE|Alu	1944	NR_146730	105378616		NR_146730	ENSG00000229388	TAF12-DT	LINC01715	TAF12 divergent transcript	ncRNA
117222	chr19	19414571	19415050	+	0	NA	intron (NM_001384527, intron 1 of 11)	AluSz6|SINE|Alu	9135	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
200772	chr6	137864951	137865630	+	0	NA	non-coding (NR_049793, exon 3 of 4)	non-coding (NR_049793, exon 3 of 4)	-1969	NM_006290	7128		NM_006290	ENSG00000118503	TNFAIP3	A20|AIFBL1|AISBL|OTUD7C|TNFA1P2	TNF alpha induced protein 3	protein-coding
130568	chr2	85753471	85753950	+	0	NA	promoter-TSS (NM_032827)	promoter-TSS (NM_032827)	-281	NM_032827	84913		NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
188652	chr5	157240701	157241250	+	0	NA	intron (NM_005546, intron 10 of 16)	AluSx|SINE|Alu	-25148	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
146927	chr20	51700801	51701030	+	0	NA	intron (NM_006045, intron 4 of 27)	intron (NM_006045, intron 4 of 27)	67475	NM_006045	10079		NM_006045	ENSG00000054793	ATP9A	ATPIIA|NEDGBA	ATPase phospholipid transporting 9A (putative)	protein-coding
195759	chr6	40390771	40391330	+	0	NA	TTS (NM_020737)	TTS (NM_020737)	12713	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
57244	chr12	121560051	121560350	+	0	NA	intron (NM_001005366, intron 4 of 22)	AluJb|SINE|Alu	20046	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
46228	chr11	124415371	124415550	+	0	NA	Intergenic	Intergenic	9411	NM_001005196	283162		NM_001005196	ENSG00000280090	OR8B4	OR11-315|OR8B4P	olfactory receptor family 8 subfamily B member 4	protein-coding
232434	chr9	136105651	136105950	+	0	NA	Intergenic	Intergenic	-10511	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
172876	chr4	3368371	3369250	+	0	NA	intron (NM_198229, intron 3 of 17)	intron (NM_198229, intron 3 of 17)	-1388	NM_198227	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
165900	chr3	106327121	106327680	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-457999	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
25817	chr10	11199671	11200280	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	34945	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
219515	chr8	74088171	74088330	+	0	NA	Intergenic	Intergenic	96858	NM_015364	23643		NM_015364	ENSG00000154589	LY96	ESOP-1|MD-2|MD2|ly-96	lymphocyte antigen 96	protein-coding
181203	chr5	39157101	39157700	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	62163	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
147863	chr20	62818421	62819650	+	0	NA	intron (NM_001853, intron 3 of 31)	intron (NM_001853, intron 3 of 31)	1985	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
17778	chr1	159132251	159132550	+	0	NA	Intergenic	Intergenic	-39215	NM_001346510	57863		NM_021189	ENSG00000162706	CADM3	BIgR|CMT2FF|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3	cell adhesion molecule 3	protein-coding
69459	chr14	94889851	94889950	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	119258	NR_144432	108868751		NR_144432		GSC-DT	DIGIT	GSC divergent transcript	ncRNA
188902	chr5	160045451	160045550	+	0	NA	intron (NM_001282500, intron 5 of 7)	(CA)n|Simple_repeat|Simple_repeat	36361	NM_003314	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
129421	chr2	69381401	69381830	+	0	NA	intron (NM_001244710, intron 1 of 19)	AluJr|SINE|Alu	5612	NM_002056	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
177428	chr4	112515251	112517430	+	0	NA	promoter-TSS (NM_024019)	promoter-TSS (NM_024019)	-160	NM_024019	63973		NM_024019	ENSG00000178403	NEUROG2	Atoh4|Math4A|NGN2|bHLHa8|ngn-2	neurogenin 2	protein-coding
106366	chr18	13273271	13273430	+	0	NA	intron (NM_001378100, intron 1 of 6)	AluJr|SINE|Alu	-4012	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
105834	chr18	2982621	2983480	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	28897	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
82514	chr16	17476601	17477030	+	0	NA	Intergenic	Intergenic	-5855	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
43682	chr11	85812171	85812330	+	0	NA	Intergenic	Intergenic	-1091	NM_001289608	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
220027	chr8	90984421	90985750	+	0	NA	promoter-TSS (NM_001363275)	promoter-TSS (NM_001363275)	-8	NM_001363275	100127983		NM_001190972	ENSG00000253250	C8orf88	-	chromosome 8 open reading frame 88	protein-coding
222245	chr8	133195301	133195500	+	0	NA	intron (NM_001204870, intron 1 of 1)	intron (NM_001204870, intron 1 of 1)	4361	NM_080838	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
165650	chr3	101827291	101828140	+	0	NA	promoter-TSS (NM_001005474)	promoter-TSS (NM_001005474)	-275	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
7738	chr1	36146301	36146930	+	0	NA	intron (NM_001270895, intron 1 of 4)	(A)n|Simple_repeat|Simple_repeat	2871	NM_014408	27095		NM_014408	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex subunit 3	protein-coding
156508	chr22	41337421	41337680	+	0	NA	intron (NM_017590, intron 7 of 22)	intron (NM_017590, intron 7 of 22)	-29783	NM_001145398	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
185218	chr5	121960251	121960580	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-1560	NM_152546	153443		NM_152546	ENSG00000151304	SRFBP1	BUD22|P49|Rlb1|STRAP|p49/STRAP	serum response factor binding protein 1	protein-coding
65725	chr14	53110451	53110980	+	0	NA	intron (NM_030637, intron 1 of 11)	AluSx|SINE|Alu	42608	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
121179	chr19	46488771	46489030	+	0	NA	intron (NM_001205281, intron 3 of 3)	intron (NM_001205281, intron 3 of 3)	6967	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
90294	chr17	1050571	1050930	+	0	NA	intron (NM_001282149, intron 9 of 17).3	intron (NM_001282149, intron 9 of 17).3	-18919	NM_001256847	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
42211	chr11	68028801	68029000	+	0	NA	3' UTR (NM_001290058, exon 9 of 9)	3' UTR (NM_001290058, exon 9 of 9)	-1781	NM_002496	4728		NM_002496	ENSG00000110717	NDUFS8	CI-23k|CI23KD|MC1DN2|TYKY	NADH:ubiquinone oxidoreductase core subunit S8	protein-coding
76255	chr15	74044821	74045080	+	0	NA	exon (NM_033238, exon 9 of 9)	exon (NM_033238, exon 9 of 9)	37600	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
64687	chr14	32327601	32327800	+	0	NA	Intergenic	MIR3|SINE|MIR	-1598	NM_004274	9472		NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding
187160	chr5	140561851	140562880	+	0	NA	exon (NM_006051, exon 5 of 12)	exon (NM_006051, exon 5 of 12)	1386	NR_106889	102465499		NR_106889	ENSG00000283717	MIR6831	hsa-mir-6831	microRNA 6831	ncRNA
9840	chr1	54222121	54222580	+	0	NA	intron (NM_001330602, intron 6 of 6)	intron (NM_001330602, intron 6 of 6)	-14093	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
120224	chr19	42311471	42311900	+	0	NA	TTS (NM_199285)	TTS (NM_199285)	-1624	NM_001366910	284339		NM_173633	ENSG00000167619	TMEM145	-	transmembrane protein 145	protein-coding
168279	chr3	141490151	141490250	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	3173	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
135535	chr2	162315301	162315500	+	0	NA	intron (NM_022168, intron 1 of 15)	intron (NM_022168, intron 1 of 15)	3284	NM_022168	64135		NM_022168	ENSG00000115267	IFIH1	AGS7|Hlcd|IDDM19|IMD95|MDA-5|MDA5|RLR-2|SGMRT1	interferon induced with helicase C domain 1	protein-coding
237208	chrX	108139371	108139530	+	0	NA	intron (NM_001321287, intron 10 of 13)	intron (NM_001321287, intron 10 of 13)	47672	NM_052936	115201		NM_052936	ENSG00000101844	ATG4A	APG4A|AUTL2|HsAPG4A	autophagy related 4A cysteine peptidase	protein-coding
119883	chr19	41534771	41535450	+	0	NA	promoter-TSS (NR_110724)	promoter-TSS (NR_110724)	-388	NR_110724	101927931		NR_110724	ENSG00000270164	LINC01480	-	long intergenic non-protein coding RNA 1480	ncRNA
38681	chr11	46554651	46554950	+	0	NA	intron (NM_001367471, intron 1 of 18)	intron (NM_001367471, intron 1 of 18)	32644	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
167325	chr3	128737501	128738330	+	0	NA	intron (NM_004637, intron 1 of 5)	AluJb|SINE|Alu	11732	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
17941	chr1	160339651	160339950	+	0	NA	intron (NM_001098398, intron 3 of 32)	intron (NM_001098398, intron 3 of 32)	3450	NM_001098398	1314		NM_004371	ENSG00000122218	COPA	AILJK|HEP-COP|alpha-COP	COPI coat complex subunit alpha	protein-coding
25034	chr10	3757171	3758700	+	0	NA	Intergenic	Intergenic	27274	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
150015	chr21	37207671	37208230	+	0	NA	promoter-TSS (NR_026719)	promoter-TSS (NR_026719)	-553	NR_026719	257203		NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9	ncRNA
97727	chr17	44362601	44364400	+	0	NA	intron (NM_198475, intron 1 of 7)	CpG	353	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
110095	chr19	1527721	1527980	+	0	NA	intron (NM_001243079, intron 6 of 13)	intron (NM_001243079, intron 6 of 13)	3773	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
144165	chr20	34068701	34070200	+	0	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	20331	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
112393	chr19	6105521	6105780	+	0	NA	intron (NM_000635, intron 1 of 17)	L2a|LINE|L2	4850	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
152313	chr22	20356401	20356600	+	0	NA	Intergenic	CpG	17587	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
4928	chr1	23912351	23912650	+	0	NA	intron (NM_001841, intron 1 of 1)	MIR|SINE|MIR	862	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
74676	chr15	62056221	62056480	+	0	NA	intron (NM_017684, intron 1 of 82)	LTR13|LTR|ERVK	4097	NM_017684	54832		NM_017684	ENSG00000129003	VPS13C	BLTP5C|PARK23	vacuolar protein sorting 13 homolog C	protein-coding
173088	chr4	6263951	6264380	+	0	NA	Intergenic	Intergenic	-5685	NM_001145853	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
75649	chr15	67481701	67481900	+	0	NA	intron (NR_147832, intron 15 of 17)	MLT1I-int|LTR|ERVL-MaLR	39173	NR_040055	100506686		NR_040051	ENSG00000259673	IQCH-AS1	-	IQCH antisense RNA 1	ncRNA
71641	chr14	106769751	106769850	+	0	NA	Intergenic	L1PB4|LINE|L1	81199	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
93709	chr17	19469371	19469570	+	0	NA	Intergenic	AluSq|SINE|Alu	58238	NM_007148	7732		NM_007148	ENSG00000128482	RNF112	BFP|ZNF179	ring finger protein 112	protein-coding
153756	chr22	29394971	29395730	+	0	NA	Intergenic	Intergenic	-6767	NM_145730	162		NM_001127	ENSG00000100280	AP1B1	ADTB1|AP105A|BAM22|CLAPB2|KIDAR	adaptor related protein complex 1 subunit beta 1	protein-coding
190677	chr5	181284071	181284480	+	0	NA	Intergenic	L1MDb|LINE|L1	23063	NR_102760	100507602		NR_102759	ENSG00000248275	TRIM52-AS1	-	TRIM52 antisense RNA 1 (head to head)	ncRNA
76614	chr15	75445201	75446780	+	0	NA	intron (NM_001145357, intron 1 of 20)	intron (NM_001145357, intron 1 of 20)	5700	NM_015477	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
212485	chr7	128538451	128538750	+	0	NA	Intergenic	AluY|SINE|Alu	61852	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
220276	chr8	97777801	97778400	+	0	NA	intron (NM_018407, intron 1 of 6)	intron (NM_018407, intron 1 of 6)	2312	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
164745	chr3	69048821	69049480	+	0	NA	promoter-TSS (NR_036087)	promoter-TSS (NR_036087)	-115	NR_036087	100422859		NR_036087	ENSG00000265355	MIR3136	mir-3136	microRNA 3136	ncRNA
135652	chr2	168378901	168379700	+	0	NA	Intergenic	Intergenic	-76972	NM_203463	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
81103	chr16	4365951	4366700	+	0	NA	intron (NM_001351729, intron 9 of 27)	intron (NM_001351729, intron 9 of 27)	-5523	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
82135	chr16	14741021	14741330	+	0	NA	Intergenic	Intergenic	-9638	NM_001277324	642799		NM_001277324	ENSG00000254852	NPIPA2	NPIP|NPIPA1	nuclear pore complex interacting protein family member A2	protein-coding
184066	chr5	93563951	93564450	+	0	NA	intron (NR_021490, intron 1 of 5)	intron (NR_021490, intron 1 of 5)	7143	NR_109825	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
68672	chr14	90277621	90278080	+	0	NA	3' UTR (NM_017970, exon 14 of 14)	3' UTR (NM_017970, exon 14 of 14)	19911	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
76775	chr15	77001601	77001800	+	0	NA	intron (NR_135552, intron 1 of 11)	L1ME4b|LINE|L1	6574	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
131288	chr2	96103221	96103880	+	0	NA	Intergenic	Intergenic	13021	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
101522	chr17	67837121	67837700	+	0	NA	intron (NM_182641, intron 1 of 27)	AluSx|SINE|Alu	11907	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
154236	chr22	31584921	31585980	+	0	NA	intron (NM_001007467, intron 14 of 32)	intron (NM_001007467, intron 14 of 32)	36081	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
187019	chr5	139762021	139762480	+	0	NA	Intergenic	AluSx|SINE|Alu	-16027	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
205204	chr7	7772451	7772850	+	0	NA	intron (NM_001302350, intron 3 of 4)	intron (NM_001302350, intron 3 of 4)	-54043	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
170370	chr3	184619171	184619930	+	0	NA	Intergenic	Intergenic	57765	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
212618	chr7	129258601	129259000	+	0	NA	intron (NM_001130720, intron 1 of 16)	intron (NM_001130720, intron 1 of 16)	33770	NM_001130720	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
106730	chr18	23515721	23516380	+	0	NA	intron (NM_001276342, intron 4 of 17)	intron (NM_001276342, intron 4 of 17)	12539	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
135902	chr2	171318771	171319830	+	0	NA	non-coding (NR_135568, exon 7 of 7)	non-coding (NR_135568, exon 7 of 7)	-88007	NM_001136554	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
109533	chr19	858121	858630	+	0	NA	Intergenic	Intergenic	-1289	NM_001928	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
170845	chr3	190585851	190586150	+	0	NA	intron (NR_157352, intron 3 of 10)	intron (NR_157352, intron 3 of 10)	71915	NM_134470	3556		NM_002182	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
39744	chr11	61825251	61826330	+	0	NA	intron (NM_001281502, intron 1 of 11)	AluY|SINE|Alu	-2510	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
92182	chr17	7743571	7744150	+	0	NA	TTS (NM_001303270)	TTS (NM_001303270)	-10460	NR_002778	118432		NR_002778	ENSG00000293140	RPL29P2	RPL29_10_1510	ribosomal protein L29 pseudogene 2	pseudo
138218	chr2	202745271	202745430	+	0	NA	intron (NM_173511, intron 4 of 7)	L1M2|LINE|L1	83884	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
33959	chr10	124640071	124640230	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-63878	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
223949	chr9	1009101	1009450	+	0	NA	Intergenic	Intergenic	32620	NM_021240	58524		NM_021240	ENSG00000064218	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
91586	chr17	5228851	5229180	+	0	NA	intron (NR_152840, intron 5 of 5)	intron (NR_152840, intron 5 of 5)	5845	NM_001319190	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
115584	chr19	15899921	15900600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2186	NM_001082	8529		NM_001082	ENSG00000186115	CYP4F2	CPF2	cytochrome P450 family 4 subfamily F member 2	protein-coding
49726	chr12	31325101	31326780	+	0	NA	TTS (NR_026806)	TTS (NR_026806)	210	NM_001135812	58516		NM_021238	ENSG00000139146	SINHCAF	C12orf14|FAM60A|L4|TERA	SIN3-HDAC complex associated factor	protein-coding
123199	chr19	52636421	52636680	+	0	NA	intron (NM_001348016, intron 1 of 3)	intron (NM_001348016, intron 1 of 3)	1841	NM_001348016	55769		NM_018300	ENSG00000167766	ZNF83	HPF1|ZNF816B	zinc finger protein 83	protein-coding
99665	chr17	50723401	50724030	+	0	NA	intron (NM_001330330, intron 1 of 10)	AluSz6|SINE|Alu	4112	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
21318	chr1	204517101	204518080	+	0	NA	intron (NM_001204172, intron 1 of 2)	AluSq|SINE|Alu	1184	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
188535	chr5	156119751	156120050	+	0	NA	Intergenic	Intergenic	-207264	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
182117	chr5	56092121	56092380	+	0	NA	Intergenic	AluJb|SINE|Alu	97083	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
158869	chr3	9852571	9852730	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-8591	NM_001351737	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
178140	chr4	142284701	142284900	+	0	NA	intron (NR_169617, intron 7 of 22)	L2a|LINE|L2	21032	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
60704	chr13	44035521	44035600	+	0	NA	Intergenic	AluJb|SINE|Alu	13225	NR_026955	121838		NR_026955		NRAD1	LINC00284|NCRNA00284	non-coding RNA in the aldehyde dehydrogenase 1A pathway	ncRNA
27170	chr10	28534871	28535230	+	0	NA	intron (NM_100486, intron 2 of 12)	intron (NM_100486, intron 2 of 12)	1932	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
63299	chr13	113982371	113983030	+	0	NA	intron (NM_001320822, intron 22 of 23).2	MLT1A0|LTR|ERVL-MaLR	-8624	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
94268	chr17	28699301	28701330	+	0	NA	intron (NM_003170, intron 34 of 36)	intron (NM_003170, intron 34 of 36)	9789	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
19473	chr1	174985471	174985630	+	0	NA	intron (NM_001366454, intron 8 of 8)	intron (NM_001366454, intron 8 of 8)	-13885	NM_001007214	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
47643	chr12	6276551	6276650	+	0	NA	Intergenic	Intergenic	-33732	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
71010	chr14	104752341	104754150	+	0	NA	promoter-TSS (NM_021709)	promoter-TSS (NM_021709)	98	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
140533	chr2	233242501	233242930	+	0	NA	Intergenic	Intergenic	-8856	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
123042	chr19	51259401	51259600	+	0	NA	intron (NM_173635, intron 1 of 5)	MER21-int|LTR|ERVL	1758	NM_173635	284369		NM_173635	ENSG00000179213	SIGLECL1	C19orf75|SIGLEC23P|SIGLECP7	SIGLEC family like 1	protein-coding
99690	chr17	50781301	50781730	+	0	NA	Intergenic	CpG	12865	NR_107026	102466918		NR_107026	ENSG00000278672	MIR8059	hsa-mir-8059	microRNA 8059	ncRNA
9063	chr1	44828351	44828650	+	0	NA	intron (NM_001166292, intron 12 of 22)	intron (NM_001166292, intron 12 of 22)	14444	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
215928	chr8	8288871	8289550	+	0	NA	Intergenic	Intergenic	60640	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
137838	chr2	200525571	200526650	+	0	NA	promoter-TSS (NM_152524)	promoter-TSS (NM_152524)	-32	NM_001160033	151246		NM_152524	ENSG00000163535	SGO2	SGOL2|TRIPIN	shugoshin 2	protein-coding
166853	chr3	123286221	123286580	+	0	NA	intron (NM_183357, intron 20 of 20)	intron (NM_183357, intron 20 of 20)	84457	NM_012430	26984		NM_012430	ENSG00000121542	SEC22A	SEC22L2	SEC22 homolog A, vesicle trafficking protein	protein-coding
141636	chr2	241719251	241719950	+	0	NA	exon (NM_001330161, exon 7 of 8)	exon (NM_001330161, exon 7 of 8)	-15030	NM_001287249	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
19325	chr1	173444771	173445230	+	0	NA	intron (NR_125960, intron 1 of 1)	intron (NR_125960, intron 1 of 1)	16362	NR_125960	101928673		NR_125960	ENSG00000203739	PRDX6-AS1	-	PRDX6 antisense RNA 1	ncRNA
21582	chr1	206479321	206480500	+	0	NA	exon (NM_014002, exon 11 of 22)	exon (NM_014002, exon 11 of 22)	5107	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
13793	chr1	117371421	117371730	+	0	NA	intron (NM_006699, intron 1 of 12)	L2c|LINE|L2	4126	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
17258	chr1	156374101	156374300	+	0	NA	intron (NR_146763, intron 2 of 11)	MER1B|DNA|hAT-Charlie	4989	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
221968	chr8	129982071	129982430	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	26203	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
105007	chr17	82029001	82029430	+	0	NA	intron (NM_144999, intron 13 of 16)	intron (NM_144999, intron 13 of 16)	-2463	NM_005052	5881		NM_005052	ENSG00000169750	RAC3	-	Rac family small GTPase 3	protein-coding
235009	chrX	39883621	39883980	+	0	NA	Intergenic	(GTG)n|Simple_repeat|Simple_repeat	46239	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
22186	chr1	212319451	212319750	+	0	NA	intron (NM_001199756, intron 1 of 12)	intron (NM_001199756, intron 1 of 12)	17742	NM_001199756	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
34636	chr10	133313721	133314350	+	0	NA	TTS (NR_130127)	TTS (NR_130127)	-1698	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
231318	chr9	130106921	130108080	+	0	NA	exon (NM_020960, exon 14 of 18)	exon (NM_020960, exon 14 of 18)	36719	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
8118	chr1	39217571	39217750	+	0	NA	intron (NM_012090, intron 1 of 92)	AluSz|SINE|Alu	133493	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
136684	chr2	181113001	181113200	+	0	NA	Intergenic	Intergenic	-10737	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
68225	chr14	76928771	76929130	+	0	NA	Intergenic	Intergenic	-30688	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
148184	chr20	63545601	63545980	+	0	NA	intron (NM_080823, intron 1 of 7)	intron (NM_080823, intron 1 of 7)	1714	NM_080823	6725		NM_080823	ENSG00000125508	SRMS	C20orf148|PTK70|SRM|dJ697K14.1	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding
88613	chr16	85608271	85608580	+	0	NA	Intergenic	Intergenic	-2984	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
59604	chr13	27704601	27704900	+	0	NA	Intergenic	L1MB2|LINE|L1	82858	NM_015972	51082		NM_015972	ENSG00000186184	POLR1D	AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2	RNA polymerase I and III subunit D	protein-coding
54661	chr12	93377201	93378100	+	0	NA	promoter-TSS (NR_040096)	promoter-TSS (NR_040096)	86	NR_040096	643339		NR_040096		LOC643339	-	uncharacterized LOC643339	ncRNA
123924	chr19	55362621	55363350	+	0	NA	exon (NM_001145402, exon 1 of 11)	exon (NM_001145402, exon 1 of 11)	275	NM_001145402	284418		NM_001145402	ENSG00000180043	GARIN5B	C19orf16|FAM71E2	golgi associated RAB2 interactor family member 5B	protein-coding
53811	chr12	69253201	69253400	+	0	NA	intron (NM_001300947, intron 3 of 10)	intron (NM_001300947, intron 3 of 10)	13731	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
224241	chr9	5844551	5845200	+	0	NA	Intergenic	Intergenic	-11758	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
235303	chrX	42535001	42535500	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	242913	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
133673	chr2	127074071	127074600	+	0	NA	intron (NM_139345, intron 2 of 15)	intron (NM_139345, intron 2 of 15)	7730	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
79442	chr16	710351	710850	+	0	NA	Intergenic	Intergenic	-4518	NM_024042	79006		NM_024042	ENSG00000103260	METRN	C16orf23|c380A1.2	meteorin, glial cell differentiation regulator	protein-coding
141114	chr2	238846901	238847300	+	0	NA	promoter-TSS (NM_057179)	promoter-TSS (NM_057179)	807	NR_157851	100287387		NR_157851		LOC100287387	-	uncharacterized LOC100287387	ncRNA
238388	chrX	150363911	150364230	+	0	NA	intron (NM_001177465, intron 1 of 4)	CpG-30120	753	NM_001177465	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
223588	chr8	144289101	144289380	+	0	NA	exon (NM_015201, exon 2 of 16)	exon (NM_015201, exon 2 of 16)	2198	NM_015201	23246		NM_015201	ENSG00000261236	BOP1	-	BOP1 ribosomal biogenesis factor	protein-coding
206613	chr7	35839821	35840500	+	0	NA	intron (NM_001788, intron 2 of 12)	(CCTTCCC)n|Simple_repeat|Simple_repeat	38941	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
1337	chr1	2469671	2470200	+	0	NA	intron (NM_001303012, intron 1 of 21)	intron (NM_001303012, intron 1 of 21)	2484	NM_001303012	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
41301	chr11	65872451	65872900	+	0	NA	intron (NM_016938, intron 1 of 10)	CpG	125	NM_016938	30008		NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin extracellular matrix protein 2	protein-coding
45309	chr11	118154301	118154900	+	0	NA	Intergenic	Intergenic	-1777	NM_174934	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
80256	chr16	2218471	2218830	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3810	NM_001042371	283871		NM_001042371	ENSG00000184207	PGP	AUM|G3PP|PGPase	phosphoglycolate phosphatase	protein-coding
168246	chr3	141388571	141389230	+	0	NA	intron (NM_001376167, intron 2 of 4)	intron (NM_001376167, intron 2 of 4)	1253	NM_001376177	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
221996	chr8	130009901	130010100	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	-1547	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
73788	chr15	45714551	45714850	+	0	NA	intron (NR_135680, intron 1 of 4)	intron (NR_135680, intron 1 of 4)	9505	NR_135680	105370802		NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA
53118	chr12	57818001	57818280	+	0	NA	Intergenic	AluJb|SINE|Alu	-2071	NM_006576	10677		NM_006576	ENSG00000135407	AVIL	ADVIL|DOC6|NPHS21|p92	advillin	protein-coding
113621	chr19	10319001	10319630	+	0	NA	intron (NM_133452, intron 9 of 12)	intron (NM_133452, intron 9 of 12)	-3300	NM_001031734	112812		NM_080665	ENSG00000267673	FDX2	FDX1L|MEOAL	ferredoxin 2	protein-coding
41972	chr11	67366871	67367380	+	0	NA	intron (NM_013246, intron 2 of 2)	intron (NM_013246, intron 2 of 2)	6473	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
158735	chr3	8964951	8965650	+	0	NA	Intergenic	Intergenic	-1828	NM_020165	56852		NM_020165	ENSG00000070950	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
187313	chr5	141614571	141614900	+	0	NA	intron (NM_005219, intron 1 of 27)	X6B_LINE|LINE|CR1	4265	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
204416	chr7	3103421	3104350	+	0	NA	Intergenic	MIR3|SINE|MIR	54688	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
116552	chr19	18220721	18221450	+	0	NA	intron (NM_001330172, intron 5 of 15)	(CCCGC)n|Simple_repeat|Simple_repeat	3408	NM_001098819	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
121146	chr19	46271571	46271930	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-25292	NM_152795	64344		NM_022462	ENSG00000124440	HIF3A	HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17	hypoxia inducible factor 3 subunit alpha	protein-coding
207469	chr7	44617051	44617750	+	0	NA	intron (NM_001363523, intron 1 of 23)	intron (NM_001363523, intron 1 of 23)	10773	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
137467	chr2	197062371	197063050	+	0	NA	intron (NM_001195144, intron 16 of 27)	L1HS|LINE|L1	-135281	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
216261	chr8	12435641	12438180	+	0	NA	promoter-TSS (NM_001137610).2	promoter-TSS (NM_001137610).2	-103	NR_040092	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
175447	chr4	71239471	71239630	+	0	NA	intron (NM_001134742, intron 2 of 24)	intron (NM_001134742, intron 2 of 24)	52291	NM_001098484	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
12049	chr1	98228071	98228230	+	0	NA	intron (NR_046088, intron 1 of 2)	MLT1D|LTR|ERVL-MaLR	17439	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
210489	chr7	100165221	100165480	+	0	NA	intron (NM_024637, intron 3 of 3)	AluSx|SINE|Alu	3267	NM_024637	79690		NM_024637	ENSG00000197093	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
221640	chr8	125926801	125927150	+	0	NA	intron (NR_038447, intron 3 of 3)	intron (NR_038447, intron 3 of 3)	24222	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
143458	chr20	30723801	30724300	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-320588	NR_045115	140678		NR_045115		MLLT10P1	MLLT10L|bA348I14.3	MLLT10 pseudogene 1	pseudo
139580	chr2	224953051	224954430	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	-6691	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
136783	chr2	181466671	181466950	+	0	NA	intron (NM_000885, intron 2 of 27)	intron (NM_000885, intron 2 of 27)	9424	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
184098	chr5	93620421	93621590	+	0	NA	promoter-TSS (NR_031754)	promoter-TSS (NR_031754)	-217	NR_031754	100313887		NR_031754	ENSG00000284336	MIR2277	mir-2277	microRNA 2277	ncRNA
142161	chr20	2825451	2826250	+	0	NA	Intergenic	Intergenic	9486	NM_001167670	100288797		NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
73123	chr15	41282421	41282700	+	0	NA	TTS (NM_007236)	TTS (NM_007236)	-1430	NR_152822	729082		NR_026757	ENSG00000247556	OIP5-AS1	cyrano|linc-OIP5	OIP5 antisense RNA 1	ncRNA
96407	chr17	40152801	40153000	+	0	NA	intron (NM_007359, intron 3 of 13)	AluSx1|SINE|Alu	-9033	NR_106926	102466986		NR_106926	ENSG00000284144	MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
72747	chr15	39593871	39594350	+	0	NA	exon (NM_003246, exon 20 of 22)	exon (NM_003246, exon 20 of 22)	13031	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
170527	chr3	186588501	186588700	+	0	NA	Intergenic	L3|LINE|CR1	17880	NR_165640	51726		NM_016306	ENSG00000090520	DNAJB11	ABBP-2|ABBP2|DJ9|Dj-9|EDJ|ERdj3|ERj3|ERj3p|PKD6|PRO1080|UNQ537	DnaJ heat shock protein family (Hsp40) member B11	protein-coding
152160	chr22	20023551	20023850	+	0	NA	intron (NM_001322172, intron 1 of 7)	AluY|SINE|Alu	2590	NM_152906	128989		NM_152906	ENSG00000183597	TANGO2	C22orf25|MECRCN	transport and golgi organization 2 homolog	protein-coding
172849	chr4	3285551	3286480	+	0	NA	Intergenic	Intergenic	-28132	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
67740	chr14	73591551	73592880	+	0	NA	exon (NM_152331, exon 1 of 3)	exon (NM_152331, exon 1 of 3)	509	NM_152331	122970		NM_152331	ENSG00000177465	ACOT4	PTE-Ib|PTE1B|PTE2B	acyl-CoA thioesterase 4	protein-coding
183556	chr5	80134271	80134430	+	0	NA	intron (NR_126061, intron 11 of 13)	AluSz|SINE|Alu	-50685	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
209667	chr7	79453201	79454750	+	0	NA	promoter-TSS (NM_001301128)	promoter-TSS (NM_001301128)	15	NR_038344	100505881		NR_038343	ENSG00000234456	MAGI2-AS3	-	MAGI2 antisense RNA 3	ncRNA
139669	chr2	226934951	226935050	+	0	NA	intron (NM_001349069, intron 8 of 8)	intron (NM_001349069, intron 8 of 8)	98946	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
206714	chr7	36528451	36528750	+	0	NA	intron (NM_001177506, intron 19 of 21)	AluJr|SINE|Alu	71520	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
162412	chr3	48244451	48244750	+	0	NA	intron (NM_016089, intron 1 of 3)	intron (NM_016089, intron 1 of 3)	3496	NM_016089	51385		NM_016089	ENSG00000164048	ZNF589	SZF1	zinc finger protein 589	protein-coding
65652	chr14	52331671	52332030	+	0	NA	Intergenic	Intergenic	17538	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
133774	chr2	127672571	127673000	+	0	NA	intron (NM_001161404, intron 1 of 9)	intron (NM_001161404, intron 1 of 9)	2745	NM_001161403	55679		NM_017980	ENSG00000072163	LIMS2	LGMD2W|MDRCMTT|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
167541	chr3	129318951	129319430	+	0	NA	intron (NR_026991, intron 3 of 4)	intron (NR_026991, intron 3 of 4)	-2904	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
239512	chrY	56830101	56830300	+	0	NA	Intergenic	(TTCCA)n|Simple_repeat|Simple_repeat	-124055	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
91022	chr17	2809371	2809930	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	13212	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
88515	chr16	85316471	85317200	+	0	NA	Intergenic	Intergenic	-10510	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
75942	chr15	70260901	70261100	+	0	NA	Intergenic	Intergenic	-163083	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
98338	chr17	46278571	46278930	+	0	NA	intron (NM_001103154, intron 4 of 4)	HAL1ME|LINE|L1	-16381	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
34102	chr10	125868401	125868630	+	0	NA	intron (NM_018180, intron 1 of 10)	intron (NM_018180, intron 1 of 10)	12777	NM_018180	55760		NM_018180	ENSG00000089876	DHX32	DDX32|DHLP1	DEAH-box helicase 32 (putative)	protein-coding
137225	chr2	191617571	191618550	+	0	NA	Intergenic	Intergenic	-60012	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
11750	chr1	92291371	92291730	+	0	NA	intron (NM_053274, intron 3 of 18)	intron (NM_053274, intron 3 of 18)	7437	NM_053274	11146		NM_007070	ENSG00000174842	GLMN	FAP|FAP48|FAP68|FKBPAP|GLML|GVM|VMGLOM	glomulin, FKBP associated protein	protein-coding
230999	chr9	129501371	129501730	+	0	NA	intron (NR_038955, intron 2 of 4)	intron (NR_038955, intron 2 of 4)	12890	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
126517	chr2	28423621	28425150	+	0	NA	Intergenic	L2|LINE|L2	-29713	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
100997	chr17	64641521	64641800	+	0	NA	intron (NM_022739, intron 1 of 18)	MLT1G|LTR|ERVL-MaLR	20647	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
208377	chr7	66653651	66655200	+	0	NA	promoter-TSS (NM_001367741)	promoter-TSS (NM_001367741)	-94	NR_110037	100996437		NR_110037	ENSG00000226824	LOC100996437	-	uncharacterized LOC100996437	ncRNA
114740	chr19	13213771	13214580	+	0	NA	intron (NM_023035, intron 40 of 46)	intron (NM_023035, intron 40 of 46)	63764	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
5775	chr1	26524351	26524850	+	0	NA	Intergenic	Intergenic	-5161	NM_002953	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
138379	chr2	204015221	204016000	+	0	NA	Intergenic	Intergenic	78847	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123579	chr19	54457771	54458450	+	0	NA	exon (NM_052925, exon 14 of 16)	exon (NM_052925, exon 14 of 16)	5668	NM_198988	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
20183	chr1	193060851	193061850	+	0	NA	intron (NM_001042370, intron 1 of 9)	intron (NM_001042370, intron 1 of 9)	-1274	NM_001350852	51377		NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
201938	chr6	151475701	151476300	+	0	NA	Intergenic	Intergenic	-18017	NM_025059	80129		NM_025059	ENSG00000120262	CCDC170	C6orf97|bA282P11.1	coiled-coil domain containing 170	protein-coding
18953	chr1	168541751	168542080	+	0	NA	intron (NM_003175, intron 2 of 2)	intron (NM_003175, intron 2 of 2)	2082	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
211876	chr7	111083201	111084030	+	0	NA	intron (NM_032549, intron 3 of 5)	MIRb|SINE|MIR	-7391	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
76880	chr15	77981421	77981680	+	0	NA	Intergenic	Intergenic	12675	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
128642	chr2	61419201	61419780	+	0	NA	intron (NM_014709, intron 2 of 79)	intron (NM_014709, intron 2 of 79)	-2113	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
102641	chr17	76028501	76028700	+	0	NA	Intergenic	Intergenic	-1294	NM_001988	2125		NM_001988	ENSG00000167880	EVPL	EVPK	envoplakin	protein-coding
20728	chr1	200887801	200888830	+	0	NA	Intergenic	Intergenic	-3216	NM_018265	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
115532	chr19	15451971	15452850	+	0	NA	intron (NM_022904, intron 16 of 17)	intron (NM_022904, intron 16 of 17)	-2454	NM_021241	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
126491	chr2	28400501	28400900	+	0	NA	intron (NM_005253, intron 1 of 3)	intron (NM_005253, intron 1 of 3)	-6028	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
21026	chr1	202966351	202968230	+	0	NA	promoter-TSS (NM_016243)	promoter-TSS (NM_016243)	-33	NM_016243	51706		NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
110478	chr19	2027221	2027900	+	0	NA	Intergenic	L1MD2|LINE|L1	-11846	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
3977	chr1	18883901	18884950	+	0	NA	intron (NM_170726, intron 5 of 15)	intron (NM_170726, intron 5 of 15)	-1150	NR_039844	100616120		NR_039844	ENSG00000265606	MIR4695	-	microRNA 4695	ncRNA
3349	chr1	15521201	15521950	+	0	NA	intron (NM_032996, intron 1 of 8)	LTR13A|LTR|ERVK	2640	NM_001229	842		NM_001229	ENSG00000132906	CASP9	APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56	caspase 9	protein-coding
80502	chr16	2722521	2722780	+	0	NA	Intergenic	AluY|SINE|Alu	-2426	NM_031948	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
182471	chr5	62340051	62340680	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	34159	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
200147	chr6	130362051	130362500	+	0	NA	intron (NM_001258275, intron 1 of 13)	MER5A1|DNA|hAT-Charlie	3593	NM_001258275	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
169086	chr3	154133051	154133150	+	0	NA	intron (NM_001251962, intron 4 of 14).2	intron (NM_001251962, intron 4 of 14).2	11710	NM_001251963	26084		NM_015595	ENSG00000114790	ARHGEF26	CSGEF|HMFN1864|SGEF	Rho guanine nucleotide exchange factor 26	protein-coding
130149	chr2	74919771	74920500	+	0	NA	intron (NR_125792, intron 1 of 4)	CpG	11004	NR_125792	102724515		NR_125792	ENSG00000204792	LINC01291	LINC01293	long intergenic non-protein coding RNA 1291	ncRNA
52720	chr12	56599801	56600000	+	0	NA	intron (NM_001351156, intron 27 of 30)	intron (NM_001351156, intron 27 of 30)	30426	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
33917	chr10	124600071	124600230	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-103878	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
43989	chr11	94171671	94171900	+	0	NA	intron (NM_015368, intron 2 of 4)	intron (NM_015368, intron 2 of 4)	42944	NM_015368	24145		NM_015368	ENSG00000110218	PANX1	MRS1|OOMD7|OZEMA7|PX1|UNQ2529	pannexin 1	protein-coding
36173	chr11	3166501	3166930	+	0	NA	Intergenic	Intergenic	-1405	NM_145638	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
217453	chr8	28633751	28634150	+	0	NA	Intergenic	Intergenic	67514	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
170272	chr3	184297171	184297680	+	0	NA	Intergenic	Intergenic	-1816	NM_002808	5708		NM_002808	ENSG00000175166	PSMD2	P97|RPN1|S2|TRAP2	proteasome 26S subunit ubiquitin receptor, non-ATPase 2	protein-coding
4081	chr1	19076451	19076750	+	0	NA	intron (NM_020765, intron 105 of 105)	intron (NM_020765, intron 105 of 105)	-119924	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
176800	chr4	102524471	102525250	+	0	NA	intron (NM_001382625, intron 2 of 24)	MER1A|DNA|hAT-Charlie	-22374	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
149997	chr21	36985501	36986330	+	0	NA	intron (NR_148020, intron 1 of 10)	L1MC4a|LINE|L1	4296	NR_148020	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
86766	chr16	67667801	67668880	+	0	NA	exon (NM_001012984, exon 4 of 4)	exon (NM_001012984, exon 4 of 4)	1526	NM_001012984	388284		NM_001012984	ENSG00000159761	C16orf86	-	chromosome 16 open reading frame 86	protein-coding
43238	chr11	75492071	75492630	+	0	NA	intron (NM_030792, intron 1 of 16)	intron (NM_030792, intron 1 of 16)	33223	NM_001351168	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
130092	chr2	74509521	74509980	+	0	NA	Intergenic	Intergenic	-2055	NM_032673	84759		NM_032673	ENSG00000115289	PCGF1	2010002K04Rik|NSPC1|RNF3A-2|RNF68	polycomb group ring finger 1	protein-coding
129563	chr2	69913001	69913300	+	0	NA	Intergenic	Intergenic	-1891	NM_001202514	4084		NM_002357	ENSG00000059728	MXD1	BHLHC58|MAD|MAD1	MAX dimerization protein 1	protein-coding
38799	chr11	47270801	47272000	+	0	NA	intron (NM_001376601, intron 1 of 34)	intron (NM_001376601, intron 1 of 34)	263	NM_001376601	8567		NM_003682	ENSG00000110514	MADD	DEEAH|DENN|IG20|NEDDISH|RAB3GEP|RabGEF	MAP kinase activating death domain	protein-coding
126760	chr2	30242751	30243700	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	11691	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
61248	chr13	49996251	49997880	+	0	NA	promoter-TSS (NR_037407)	promoter-TSS (NR_037407)	23	NM_005798	10206		NM_005798	ENSG00000204977	TRIM13	CAR|DLEU5|LEU5|RFP2|RNF77	tripartite motif containing 13	protein-coding
136632	chr2	179106851	179107150	+	0	NA	3' UTR (NM_178123, exon 18 of 18)	3' UTR (NM_178123, exon 18 of 18)	-56863	NM_173648	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
148132	chr20	63472251	63473150	+	0	NA	promoter-TSS (NM_004518)	promoter-TSS (NM_004518)	-45	NM_172108	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
23579	chr1	229529671	229529830	+	0	NA	intron (NM_012089, intron 8 of 12)	intron (NM_012089, intron 8 of 12)	21320	NR_110630	101927478		NR_110630		NUP133-DT	-	NUP133 divergent transcript	ncRNA
39393	chr11	60455521	60456000	+	0	NA	promoter-TSS (NM_021950)	promoter-TSS (NM_021950)	-49	NM_021950	931		NM_021950	ENSG00000156738	MS4A1	B1|Bp35|CD20|CVID5|FMC7|LEU-16|S7	membrane spanning 4-domains A1	protein-coding
132145	chr2	101729101	101729300	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	30935	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
33725	chr10	122289871	122290030	+	0	NA	exon (NM_001318189, exon 6 of 16)	exon (NM_001318189, exon 6 of 16)	18654	NM_001318189	118663		NM_144587	ENSG00000138152	BTBD16	C10orf87	BTB domain containing 16	protein-coding
109328	chr19	594671	594830	+	0	NA	intron (NM_001194, intron 1 of 7)	intron (NM_001194, intron 1 of 7)	4869	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
187980	chr5	149490521	149491200	+	0	NA	Intergenic	AluSz|SINE|Alu	59505	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
141055	chr2	238252971	238253550	+	0	NA	exon (NM_022817, exon 19 of 23)	exon (NM_022817, exon 19 of 23)	-13222	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
101277	chr17	66375471	66375630	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	41304	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
231279	chr9	130021771	130022230	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluJb|SINE|Alu	21189	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
227439	chr9	90142521	90142850	+	0	NA	Intergenic	Intergenic	-101186	NR_038882	286370		NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
198926	chr6	110299051	110299150	+	0	NA	exon (NM_001354595, exon 3 of 4)	exon (NM_001354595, exon 3 of 4)	30958	NM_001354595	728464		NM_001123364	ENSG00000053328	METTL24	C6orf186	methyltransferase like 24	protein-coding
229637	chr9	124208451	124209380	+	0	NA	Intergenic	L2|LINE|L2	-48691	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
199236	chr6	111825371	111826400	+	0	NA	intron (NM_002037, intron 2 of 13)	LTR103_Mam|LTR|ERV1?	47186	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
105750	chr18	2754401	2755430	+	0	NA	intron (NM_015295, intron 34 of 47)	AluSx|SINE|Alu	-92091	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
2010	chr1	6784361	6787180	+	0	NA	promoter-TSS (NR_149049)	promoter-TSS (NR_149049)	316	NM_001349609	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
203406	chr7	149001	150630	+	0	NA	promoter-TSS (NR_134325)	promoter-TSS (NR_134325)	97	NR_108064	100507642		NR_108064	ENSG00000240859	LINC03014	-	long intergenic non-protein coding RNA 3014	ncRNA
8202	chr1	39601551	39602030	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-25000	NM_003819	8761		NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
28661	chr10	59908141	59908780	+	0	NA	Intergenic	Intergenic	-1904	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
5246	chr1	25017271	25018300	+	0	NA	Intergenic	Intergenic	-5718	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
144985	chr20	37347771	37348130	+	0	NA	intron (NM_198291, intron 1 of 13)	intron (NM_198291, intron 1 of 13)	1810	NM_198291	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
87050	chr16	68294501	68294700	+	0	NA	intron (NM_001076785, intron 8 of 11)	intron (NM_001076785, intron 8 of 11)	16346	NM_032178	84138		NM_032178	ENSG00000103061	SLC7A6OS	EPM12|Iwr1	solute carrier family 7 member 6 opposite strand	protein-coding
99563	chr17	50425251	50426550	+	0	NA	promoter-TSS (NM_001288971)	promoter-TSS (NM_001288971)	-258	NM_001288968	80221		NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
140328	chr2	232530101	232531030	+	0	NA	intron (NM_001256657, intron 6 of 10)	intron (NM_001256657, intron 6 of 10)	4405	NM_000751	1144		NM_000751	ENSG00000135902	CHRND	ACHRD|CMS2A|CMS3A|CMS3B|CMS3C|FCCMS|SCCMS	cholinergic receptor nicotinic delta subunit	protein-coding
41168	chr11	65616611	65618100	+	0	NA	intron (NM_032223, intron 3 of 34)	intron (NM_032223, intron 3 of 34)	1043	NM_032223	399909		NM_032223	ENSG00000197136	PCNX3	PCNXL3	pecanex 3	protein-coding
13344	chr1	113811451	113813080	+	0	NA	promoter-TSS (NR_125965)	promoter-TSS (NR_125965)	211	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
171992	chr4	949801	950000	+	0	NA	intron (NM_001297423, intron 3 of 10)	MLT1A0|LTR|ERVL-MaLR	17440	NM_032326	84286		NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
207045	chr7	39580001	39580680	+	0	NA	intron (NM_001282446, intron 2 of 2)	intron (NM_001282446, intron 2 of 2)	13936	NM_001282446	57002		NM_020192	ENSG00000241127	YAE1	C7orf36|CIAB2|GK003|YAE1D1	YAE1 maturation factor of ABCE1	protein-coding
112777	chr19	7471301	7471700	+	0	NA	3' UTR (NM_001130955, exon 20 of 20)	3' UTR (NM_001130955, exon 20 of 20)	17535	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
185346	chr5	126973321	126973580	+	0	NA	intron (NM_178450, intron 1 of 4)	intron (NM_178450, intron 1 of 4)	57108	NM_178450	115123		NM_178450	ENSG00000173926	MARCHF3	MARCH-III|MARCH3|RNF173	membrane associated ring-CH-type finger 3	protein-coding
10731	chr1	76076001	76076200	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	1354	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
15973	chr1	151908371	151908530	+	0	NA	intron (NM_053055, intron 1 of 5)	MER61-int|LTR|ERV1	1061	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
41400	chr11	66013451	66013880	+	0	NA	TTS (NM_001323)	TTS (NM_001323)	1657	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
178293	chr4	145124921	145125180	+	0	NA	exon (NM_001040876, exon 17 of 18)	exon (NM_001040876, exon 17 of 18)	-26509	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
232995	chr9	136996071	136998900	+	0	NA	promoter-TSS (NM_004669)	promoter-TSS (NM_004669)	-917	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
47545	chr12	4284051	4284780	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-8231	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
118021	chr19	34183721	34184180	+	0	NA	intron (NM_001384434, intron 1 of 9).2	L1ME1|LINE|L1	11446	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
208520	chr7	70312321	70312880	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	714125	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
165833	chr3	105839701	105839900	+	0	NA	intron (NR_135807, intron 3 of 20)	intron (NR_135807, intron 3 of 20)	27791	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
230124	chr9	127718301	127718500	+	0	NA	intron (NM_144965, intron 4 of 13)	MER3|DNA|hAT-Charlie	2321	NM_144965	158248		NM_144965	ENSG00000167094	TTC16	-	tetratricopeptide repeat domain 16	protein-coding
138073	chr2	201880151	201880250	+	0	NA	intron (NM_001261435, intron 12 of 13)	(GTGT)n|Simple_repeat|Simple_repeat	73621	NM_001261435	65061		NM_139158	ENSG00000138395	CDK15	ALS2CR7|PFTAIRE2|PFTK2	cyclin dependent kinase 15	protein-coding
127108	chr2	37638971	37639330	+	0	NA	Intergenic	Intergenic	32492	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
82253	chr16	15095421	15095950	+	0	NA	intron (NR_125434, intron 1 of 3)	AluSz6|SINE|Alu	1274	NR_125434	100505915		NR_125434	ENSG00000293341	LOC100505915	-	uncharacterized LOC100505915	ncRNA
201074	chr6	142746601	142747000	+	0	NA	Intergenic	Intergenic	-108911	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
41861	chr11	67189551	67189650	+	0	NA	intron (NM_012308, intron 5 of 20)	AluSx1|SINE|Alu	-50414	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
179101	chr4	168511651	168512500	+	0	NA	exon (NM_016081, exon 2 of 21)	exon (NM_016081, exon 2 of 21)	15023	NM_001166108	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
45869	chr11	119693271	119693630	+	0	NA	intron (NM_203286, intron 1 of 5)	MIRb|SINE|MIR	35750	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
117577	chr19	21482601	21483230	+	0	NA	promoter-TSS (NR_037194)	promoter-TSS (NR_037194)	-800	NR_037194	400680		NR_037194	ENSG00000268658	LINC00664	-	long intergenic non-protein coding RNA 664	ncRNA
196739	chr6	45330771	45331130	+	0	NA	intron (NM_001024630, intron 2 of 8)	intron (NM_001024630, intron 2 of 8)	2620	NR_103532	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
21396	chr1	205278501	205278900	+	0	NA	Intergenic	Intergenic	21503	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
70765	chr14	103428851	103429650	+	0	NA	intron (NM_002376, intron 3 of 15)	MIRc|SINE|MIR	43835	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
213868	chr7	142326801	142327180	+	0	NA	Intergenic	Intergenic	-54741	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
203094	chr6	166410521	166410800	+	0	NA	3' UTR (NM_001006932, exon 22 of 22)	3' UTR (NM_001006932, exon 22 of 22)	-27720	NR_164831	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
52131	chr12	54207051	54207150	+	0	NA	Intergenic	MIR|SINE|MIR	-18106	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
104645	chr17	81455501	81455700	+	0	NA	intron (NM_001377448, intron 15 of 27)	intron (NM_001377448, intron 15 of 27)	-4412	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
228118	chr9	96621651	96622150	+	0	NA	Intergenic	Intergenic	-2057	NM_033331	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
176214	chr4	84493201	84493680	+	0	NA	exon (NM_006168, exon 3 of 3)	exon (NM_006168, exon 3 of 3)	5852	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
65959	chr14	56117721	56119930	+	0	NA	intron (NM_021255, intron 1 of 5)	CpG	414	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
61951	chr13	79194251	79194830	+	0	NA	Intergenic	Intergenic	211681	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
32166	chr10	101558021	101558880	+	0	NA	Intergenic	Intergenic	29807	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
28879	chr10	62748521	62748780	+	0	NA	Intergenic	L3b|LINE|CR1	-56070	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
31562	chr10	97278451	97278780	+	0	NA	intron (NM_001204300, intron 1 of 10)	intron (NM_001204300, intron 1 of 10)	-7958	NM_001256423	84986		NM_032900	ENSG00000213390	ARHGAP19	-	Rho GTPase activating protein 19	protein-coding
82773	chr16	21440901	21441550	+	0	NA	Intergenic	Intergenic	-6770	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
53358	chr12	64656251	64657030	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-34035	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52838	chr12	57078071	57080000	+	0	NA	promoter-TSS (NM_001130963)	promoter-TSS (NM_001130963)	-244	NM_015257	23306		NM_015257	ENSG00000166881	NEMP1	TMEM194|TMEM194A	nuclear envelope integral membrane protein 1	protein-coding
36008	chr11	2897371	2897830	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-2091	NM_183233	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
101026	chr17	64782351	64783200	+	0	NA	promoter-TSS (NR_026899)	promoter-TSS (NR_026899)	-776	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
76133	chr15	72534371	72535300	+	0	NA	intron (NM_005744, intron 2 of 13)	intron (NM_005744, intron 2 of 13)	-52382	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
230670	chr9	128713351	128713800	+	0	NA	exon (NM_013355, exon 9 of 22)	exon (NM_013355, exon 9 of 22)	10552	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
70790	chr14	103530571	103531150	+	0	NA	intron (NM_152307, intron 2 of 3)	intron (NM_152307, intron 2 of 3)	1664	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
2989	chr1	12017171	12017330	+	0	NA	Intergenic	Intergenic	-2248	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
173972	chr4	26081721	26082180	+	0	NA	Intergenic	Intergenic	-81508	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
184562	chr5	102771351	102771750	+	0	NA	intron (NM_001364588, intron 1 of 24)	intron (NM_001364588, intron 1 of 24)	16245	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
130176	chr2	82526971	82527400	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-329618	NR_033423	1720		NR_033423		DHFRP3	-	dihydrofolate reductase pseudogene 3	pseudo
106854	chr18	24054101	24054500	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-38840	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
143514	chr20	31538871	31539030	+	0	NA	3' UTR (NM_178582, exon 3 of 3)	3' UTR (NM_178582, exon 3 of 3)	24508	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
20830	chr1	201481781	201482850	+	0	NA	Intergenic	Intergenic	-13127	NM_012396	23612		NM_012396	ENSG00000174307	PHLDA3	TIH1	pleckstrin homology like domain family A member 3	protein-coding
166630	chr3	119581371	119581530	+	0	NA	intron (NM_001371092, intron 2 of 4)	MIR|SINE|MIR	1958	NM_001371092	141		NM_001125	ENSG00000144843	ADPRH	ARH1|hARH1	ADP-ribosylarginine hydrolase	protein-coding
97439	chr17	43548071	43548230	+	0	NA	Intergenic	Intergenic	-1810	NM_001261437	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
7973	chr1	37846701	37847000	+	0	NA	intron (NM_005955, intron 2 of 10)	intron (NM_005955, intron 2 of 10)	12742	NM_005955	4520		NM_005955	ENSG00000188786	MTF1	MTF-1|ZRF	metal regulatory transcription factor 1	protein-coding
62224	chr13	98515901	98516100	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	6125	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
221188	chr8	120730671	120731800	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-30018	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
24511	chr1	244651421	244651680	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-1576	NM_016076	51029		NM_016076	ENSG00000121644	DESI2	C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
91392	chr17	4587421	4587680	+	0	NA	intron (NM_001375361, intron 1 of 6)	intron (NM_001375361, intron 1 of 6)	3021	NM_001375361	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
211849	chr7	110595821	110596080	+	0	NA	Intergenic	LTR40a|LTR|ERVL	-495056	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
31291	chr10	92572021	92572280	+	0	NA	intron (NM_001322795, intron 1 of 25)	intron (NM_001322795, intron 1 of 25)	1356	NM_001322796	3416		NM_004969	ENSG00000119912	IDE	INSULYSIN	insulin degrading enzyme	protein-coding
35299	chr11	1015671	1016030	+	0	NA	exon (NM_005961, exon 31 of 33)	exon (NM_005961, exon 31 of 33)	20868	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
45671	chr11	119027801	119028500	+	0	NA	intron (NM_001164278, intron 4 of 11)	intron (NM_001164278, intron 4 of 11)	1330	NM_001164280	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
41679	chr11	66620371	66620730	+	0	NA	intron (NM_001198846, intron 1 of 1)	AluSx|SINE|Alu	3920	NM_006328	10432		NM_006328	ENSG00000239306	RBM14	COAA|PSP2|SIP|SYTIP1|TMEM137	RNA binding motif protein 14	protein-coding
138346	chr2	203874021	203874930	+	0	NA	TTS (NM_005214)	TTS (NM_005214)	6704	NM_001037631	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
123546	chr19	54372151	54373200	+	0	NA	Intergenic	AluSg|SINE|Alu	-2119	NM_001289026	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
147470	chr20	59087751	59088150	+	0	NA	Intergenic	Intergenic	-35438	NM_001384354	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
136555	chr2	177416231	177416700	+	0	NA	intron (NM_003659, intron 1 of 19)	intron (NM_003659, intron 1 of 19)	23692	NM_003659	8540		NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3	alkylglycerone phosphate synthase	protein-coding
57006	chr12	120577871	120578230	+	0	NA	TTS (NM_198202)	TTS (NM_198202)	3348	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
157471	chr22	45292551	45292650	+	0	NA	intron (NM_006953, intron 4 of 5)	intron (NM_006953, intron 4 of 5)	7651	NM_001167574	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
77863	chr15	88899221	88899480	+	0	NA	3' UTR (NM_005928, exon 8 of 8)	3' UTR (NM_005928, exon 8 of 8)	-3806	NM_178232	145864		NM_178232	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
103297	chr17	77863571	77864230	+	0	NA	Intergenic	Intergenic	20187	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
169534	chr3	170160351	170161050	+	0	NA	intron (NM_001308116, intron 4 of 14)	AluSx1|SINE|Alu	21033	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
233299	chr9	137326601	137327130	+	0	NA	intron (NM_017820, intron 17 of 21)	L1MB4|LINE|L1	-24594	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
190394	chr5	179797951	179799530	+	0	NA	promoter-TSS (NR_031598).2	promoter-TSS (NR_031598).2	-394	NR_031598	100302156		NR_031598	ENSG00000221394	MIR1229	MIRN1229|hsa-mir-1229	microRNA 1229	ncRNA
181156	chr5	38994171	38994580	+	0	NA	intron (NM_001285439, intron 6 of 38)	Tigger4b|DNA|TcMar-Tigger	80024	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
184475	chr5	100826071	100826430	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-9685	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
185073	chr5	116492021	116492300	+	0	NA	intron (NM_001300780, intron 6 of 19)	intron (NM_001300780, intron 6 of 19)	44662	NR_109879	101927233		NR_109879	ENSG00000248445	SEMA6A-AS1	CTB-118N6.3	SEMA6A antisense RNA 1	ncRNA
175953	chr4	81003621	81003880	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-26958	NM_001201	651		NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
83815	chr16	28836001	28836200	+	0	NA	exon (NM_007245, exon 22 of 22)	exon (NM_007245, exon 22 of 22)	7907	NR_039872	100616256		NR_039872	ENSG00000283845	MIR4721	-	microRNA 4721	ncRNA
10120	chr1	59292501	59292900	+	0	NA	Intergenic	Intergenic	-4113	NM_001350793	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
171618	chr3	197447871	197448070	+	0	NA	Intergenic	Intergenic	61691	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
178415	chr4	147730971	147733330	+	0	NA	promoter-TSS (NM_024605)	promoter-TSS (NM_024605)	62	NM_024605	79658		NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
84665	chr16	30747451	30750200	+	0	NA	exon (NM_001172432, exon 2 of 11)	exon (NM_001172432, exon 2 of 11)	400	NM_000294	5261		NM_000294	ENSG00000156873	PHKG2	GSD9C	phosphorylase kinase catalytic subunit gamma 2	protein-coding
103122	chr17	77380651	77381330	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	4907	NM_001113494	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
115655	chr19	16129051	16129350	+	0	NA	intron (NM_005370, intron 6 of 7)	MIRc|SINE|MIR	-4828	NR_111904	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
64030	chr14	22519301	22520280	+	0	NA	Intergenic	Intergenic	-36831	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
196601	chr6	44232901	44233680	+	0	NA	intron (NM_001304462, intron 13 of 13)	intron (NM_001304462, intron 13 of 13)	9695	NM_001372327	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
232482	chr9	136247101	136247300	+	0	NA	Intergenic	L2a|LINE|L2	-1388	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
3925	chr1	17433471	17433630	+	0	NA	intron (NM_018715, intron 2 of 12).2	intron (NM_018715, intron 2 of 12).2	4986	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
92558	chr17	8967101	8967880	+	0	NA	Intergenic	Intergenic	-1778	NM_001251853	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
51577	chr12	52615071	52615830	+	0	NA	TTS (NR_126005)	TTS (NR_126005)	3109	NM_175068	319101		NM_175068	ENSG00000186049	KRT73	CK-73|IRT6IRS3|K6IRS3|K73|KRT6IRS3	keratin 73	protein-coding
142981	chr20	20051801	20052940	+	0	NA	promoter-TSS (NM_015585)	promoter-TSS (NM_015585)	96	NM_001278628	51340		NM_016652	ENSG00000101343	CRNKL1	CLF|CRN|Clf1|HCRN|MSTP021|SYF3	crooked neck pre-mRNA splicing factor 1	protein-coding
152980	chr22	23137401	23139050	+	0	NA	intron (NM_014433, intron 3 of 6)	intron (NM_014433, intron 3 of 6)	3765	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
185379	chr5	127785451	127786230	+	0	NA	intron (NM_001317938, intron 3 of 6)	intron (NM_001317938, intron 3 of 6)	82449	NM_001317938	728586		NM_001317938	ENSG00000230561	CCDC192	LINC01183	coiled-coil domain containing 192	protein-coding
175603	chr4	75727201	75727980	+	0	NA	intron (NM_003715, intron 1 of 23)	intron (NM_003715, intron 1 of 23)	3013	NM_003715	8615		NM_003715	ENSG00000138768	USO1	P115|TAP|VDP	USO1 vesicle transport factor	protein-coding
84690	chr16	30777901	30778600	+	0	NA	TTS (NM_001345970)	TTS (NM_001345970)	8955	NM_001080417	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
178688	chr4	152532301	152532630	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	2568	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
171485	chr3	196528371	196529580	+	0	NA	Intergenic	CpG	-13629	NM_001077657	255798		NM_001077657	ENSG00000214097	SMCO1	C3orf43	single-pass membrane protein with coiled-coil domains 1	protein-coding
88134	chr16	81619151	81619650	+	0	NA	intron (NM_030629, intron 2 of 20)	intron (NM_030629, intron 2 of 20)	8052	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
89268	chr16	88665801	88666000	+	0	NA	intron (NR_024399, intron 1 of 3)	AluJr|SINE|Alu	2527	NR_024399	197187		NM_144986	ENSG00000260630	SNAI3-AS1	-	SNAI3 antisense RNA 1	ncRNA
115905	chr19	16596971	16597330	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-24735	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
105882	chr18	3255471	3255830	+	0	NA	non-coding (NR_130144, exon 3 of 3)	non-coding (NR_130144, exon 3 of 3)	3437	NM_001303049	10627		NM_006471	ENSG00000101608	MYL12A	HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B	myosin light chain 12A	protein-coding
213437	chr7	138542121	138542380	+	0	NA	intron (NM_015905, intron 7 of 18)	Tigger1|DNA|TcMar-Tigger	81991	NM_003852	8805		NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
196951	chr6	52664201	52664980	+	0	NA	non-coding (NR_024405, exon 1 of 3)	non-coding (NR_024405, exon 1 of 3)	189	NR_024403	730101		NR_024403	ENSG00000291006	LOC730101	-	uncharacterized LOC730101	ncRNA
62712	chr13	104608371	104608530	+	0	NA	Intergenic	Intergenic	-857417	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
45520	chr11	118715271	118715430	+	0	NA	Intergenic	Intergenic	-35700	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
134141	chr2	134180851	134181750	+	0	NA	intron (NM_001371457, intron 1 of 16)	MER20|DNA|hAT-Charlie	54175	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
48651	chr12	10422251	10422500	+	0	NA	Intergenic	Intergenic	-1780	NM_007333	3823		NM_002261	ENSG00000205810	KLRC3	NKG2-E|NKG2E	killer cell lectin like receptor C3	protein-coding
154762	chr22	36513101	36513750	+	0	NA	intron (NR_156418, intron 12 of 14)	AluSq|SINE|Alu	-6385	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
69417	chr14	94066001	94066850	+	0	NA	intron (NM_020414, intron 2 of 8).2	L1PB1|LINE|L1	14777	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
144492	chr20	35658051	35658150	+	0	NA	intron (NM_001198840, intron 1 of 1)	intron (NM_001198840, intron 1 of 1)	-4191	NM_003915	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
117320	chr19	19511451	19512050	+	0	NA	Intergenic	Intergenic	3798	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
11270	chr1	89070021	89070480	+	0	NA	Intergenic	Intergenic	-5042	NM_002053	2633		NM_002053	ENSG00000117228	GBP1	hGBP1	guanylate binding protein 1	protein-coding
213896	chr7	142469571	142470300	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-4592	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
168318	chr3	141644701	141645230	+	0	NA	Intergenic	Intergenic	-18234	NR_136190	646730		NR_136190		LINC02618	-	long intergenic non-protein coding RNA 2618	ncRNA
6999	chr1	31848221	31849250	+	0	NA	Intergenic	Intergenic	-32684	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
160090	chr3	18825171	18825930	+	0	NA	Intergenic	Intergenic	-322960	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
148964	chr21	13740351	13740600	+	0	NA	intron (NR_146656, intron 3 of 4).2	intron (NR_146656, intron 3 of 4).2	16286	NR_128718	103504736		NR_128718	ENSG00000278618	MIR8069	MIR8069-2|hsa-mir-8069-2	microRNA 8069	ncRNA
234991	chrX	39764771	39765130	+	0	NA	Intergenic	Intergenic	-72611	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
150154	chr21	38804771	38807100	+	0	NA	promoter-TSS (NM_005239)	promoter-TSS (NM_005239)	6	NM_005239	2114		NM_005239	ENSG00000157557	ETS2	ETS2IT1	ETS proto-oncogene 2, transcription factor	protein-coding
183052	chr5	73444201	73444800	+	0	NA	Intergenic	CpG	4277	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
33652	chr10	119725401	119726830	+	0	NA	promoter-TSS (NM_014937)	promoter-TSS (NM_014937)	65	NM_014937	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
60930	chr13	46292871	46293030	+	0	NA	Intergenic	Intergenic	4894	NR_047493	100861554		NR_047493	ENSG00000261097	LINC00563	-	long intergenic non-protein coding RNA 563	ncRNA
44508	chr11	107017651	107018330	+	0	NA	exon (NM_001256424, exon 1 of 9)	exon (NM_001256424, exon 1 of 9)	486	NM_000855	2977		NM_000855	ENSG00000152402	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1 soluble subunit alpha 2	protein-coding
21158	chr1	203696771	203697150	+	0	NA	intron (NM_001365783, intron 2 of 20)	intron (NM_001365783, intron 2 of 20)	-32621	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
121599	chr19	47391151	47391900	+	0	NA	Intergenic	L1MB8|LINE|L1	28002	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
39023	chr11	47754051	47754350	+	0	NA	intron (NM_015308, intron 3 of 16)	AluSx|SINE|Alu	13141	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
196865	chr6	49462051	49462350	+	0	NA	intron (NM_000255, intron 1 of 12)	intron (NM_000255, intron 1 of 12)	1053	NM_000255	4594		NM_000255	ENSG00000146085	MMUT	MCM|MUT	methylmalonyl-CoA mutase	protein-coding
231246	chr9	129985071	129985230	+	0	NA	intron (NM_001363755, intron 2 of 15)	L1M7|LINE|L1	58039	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
161388	chr3	41204151	41204830	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	4985	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
126336	chr2	27369721	27371980	+	0	NA	promoter-TSS (NM_001318969)	promoter-TSS (NM_001318969)	234	NR_049788	9784		NM_014748	ENSG00000115234	SNX17	-	sorting nexin 17	protein-coding
125864	chr2	24511171	24511330	+	0	NA	intron (NM_001362954, intron 1 of 23)	L1MB5|LINE|L1	19373	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
956	chr1	1752771	1753600	+	0	NA	intron (NM_001198995, intron 9 of 9)	intron (NM_001198995, intron 9 of 9)	5457	NM_001198995	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
111824	chr19	4509971	4510930	+	0	NA	exon (NM_001367868, exon 5 of 8)	exon (NM_001367868, exon 5 of 8)	8036	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
53196	chr12	62251251	62251550	+	0	NA	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-8940	NM_001351162	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
5727	chr1	26411401	26411850	+	0	NA	intron (NM_024674, intron 2 of 3)	CpG-709	808	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
21851	chr1	207404851	207405250	+	0	NA	Intergenic	Intergenic	-49278	NM_001877	1380		NM_001877	ENSG00000117322	CR2	C3DR|CD21|CR|CVID7|SLEB9	complement C3d receptor 2	protein-coding
25859	chr10	11241501	11241700	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	76570	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
208871	chr7	73736601	73737050	+	0	NA	TTS (NR_026690)	TTS (NR_026690)	1756	NR_026690	171022		NR_026690		ABHD11-AS1	LINC00035|NCRNA00035|WBSCR26	ABHD11 antisense RNA 1 (tail to tail)	ncRNA
222872	chr8	142742551	142742850	+	0	NA	promoter-TSS (NM_020427)	promoter-TSS (NM_020427)	-294	NM_020427	57152		NM_020427	ENSG00000126233	SLURP1	ANUP|ARS|ArsB|LY6-MT|LY6LS|MDM	secreted LY6/PLAUR domain containing 1	protein-coding
116056	chr19	17220221	17220830	+	0	NA	TTS (NM_018467)	TTS (NM_018467)	5168	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
68979	chr14	91459121	91459600	+	0	NA	intron (NR_158976, intron 16 of 16)	AluSx1|SINE|Alu	-41540	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
8239	chr1	39737201	39737910	+	0	NA	Intergenic	LTR46|LTR|ERV1	-1290	NR_036544	10450		NM_006112	ENSG00000084072	PPIE	CYP-33|CYP33|CypE	peptidylprolyl isomerase E	protein-coding
175704	chr4	77100451	77101150	+	0	NA	Intergenic	Intergenic	-24811	NM_006835	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
41902	chr11	67269371	67269730	+	0	NA	intron (NM_001619, intron 1 of 20)	intron (NM_001619, intron 1 of 20)	3077	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
158035	chr22	49929321	49930130	+	0	NA	Intergenic	CpG	11091	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
194874	chr6	34639401	34640000	+	0	NA	intron (NM_022758, intron 2 of 3)	intron (NM_022758, intron 2 of 3)	-56454	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
95692	chr17	38429851	38429950	+	0	NA	intron (NM_001199417, intron 1 of 23).2	intron (NM_001199417, intron 1 of 23).2	1436	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
28167	chr10	43648251	43649600	+	0	NA	promoter-TSS (NM_001324167)	promoter-TSS (NM_001324167)	-44	NM_006973	7580		NM_006973	ENSG00000169740	ZNF32	KOX30|ZNF637|Zfp637	zinc finger protein 32	protein-coding
4615	chr1	22100051	22100350	+	0	NA	3' UTR (NM_001039802, exon 7 of 7)	3' UTR (NM_001039802, exon 7 of 7)	42897	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
131406	chr2	96275721	96276200	+	0	NA	intron (NM_014014, intron 43 of 44)	AluY|SINE|Alu	9735	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
176857	chr4	102609471	102609630	+	0	NA	intron (NM_001382625, intron 20 of 24)	AluSx|SINE|Alu	-107064	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
188265	chr5	151087001	151087800	+	0	NA	promoter-TSS (NM_001252391)	promoter-TSS (NM_001252391)	-234	NM_001252392	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
44346	chr11	102425871	102426030	+	0	NA	intron (NM_052932, intron 2 of 4)	L2a|LINE|L2	26815	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
159691	chr3	15557551	15558150	+	0	NA	Intergenic	Intergenic	-36144	NM_080539	8292		NM_005677	ENSG00000206561	COLQ	CMS5|EAD	collagen like tail subunit of asymmetric acetylcholinesterase	protein-coding
47810	chr12	6583221	6583880	+	0	NA	intron (NM_001273, intron 25 of 39)	intron (NM_001273, intron 25 of 39)	-1941	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
119611	chr19	40765171	40766630	+	0	NA	TTS (NM_004596)	TTS (NM_004596)	-9260	NM_001202553	8190		NM_006533	ENSG00000261857	MIA	CD-RAP|MIA1	MIA SH3 domain containing	protein-coding
41371	chr11	65980171	65980600	+	0	NA	TTS (NM_005146)	TTS (NM_005146)	18651	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
65085	chr14	39469321	39469580	+	0	NA	Intergenic	L1MA3|LINE|L1	-36950	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
45379	chr11	118310301	118310580	+	0	NA	intron (NM_000733, intron 4 of 8)	L1PA13|LINE|L1	5710	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
151152	chr21	44919001	44919740	+	0	NA	intron (NM_001127491, intron 1 of 15)	intron (NM_001127491, intron 1 of 15)	1529	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
49753	chr12	31737601	31737880	+	0	NA	Intergenic	Intergenic	-8566	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
1330	chr1	2443351	2444400	+	0	NA	Intergenic	CpG	-23576	NM_001303012	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
100946	chr17	64485171	64485530	+	0	NA	intron (NM_007215, intron 5 of 7)	intron (NM_007215, intron 5 of 7)	11704	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
103279	chr17	77781171	77781650	+	0	NA	Intergenic	Intergenic	-52851	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
174121	chr4	36217971	36218500	+	0	NA	intron (NR_146894, intron 2 of 32)	L1PREC2|LINE|L1	25704	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
62516	chr13	99503121	99503380	+	0	NA	intron (NM_004800, intron 1 of 16)	L2c|LINE|L2	1778	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
213341	chr7	135512071	135512980	+	0	NA	Intergenic	AluJr|SINE|Alu	-2398	NM_001190848	4850		NM_013316	ENSG00000080802	CNOT4	CLONE243|NOT4|NOT4H	CCR4-NOT transcription complex subunit 4	protein-coding
233277	chr9	137305621	137306350	+	0	NA	TTS (NM_017820)	TTS (NM_017820)	-3714	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
106217	chr18	11818501	11818930	+	0	NA	intron (NM_182978, intron 4 of 11)	L4_A_Mam|LINE|RTE-X	-32698	NM_020412	57132		NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
110822	chr19	2484501	2484700	+	0	NA	Intergenic	MIR|SINE|MIR	8473	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
16428	chr1	154557811	154560180	+	0	NA	promoter-TSS (NM_017582)	promoter-TSS (NM_017582)	-333	NM_017582	55585		NM_017582	ENSG00000160714	UBE2Q1	GTAP|NICE-5|NICE5|PRO3094|UBE2Q	ubiquitin conjugating enzyme E2 Q1	protein-coding
236219	chrX	65702171	65703030	+	0	NA	intron (NM_002444, intron 1 of 12)	AluSx1|SINE|Alu	34946	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
59674	chr13	28720171	28720330	+	0	NA	Intergenic	Intergenic	-1237	NM_001347960	283537		NM_181785	ENSG00000139508	SLC46A3	FKSG16	solute carrier family 46 member 3	protein-coding
61112	chr13	48488621	48489250	+	0	NA	TTS (NM_001352424)	TTS (NM_001352424)	44145	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
149690	chr21	33940821	33941080	+	0	NA	intron (NR_038883, intron 1 of 2)	intron (NR_038883, intron 1 of 2)	9736	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
14745	chr1	145996071	145997650	+	0	NA	promoter-TSS (NM_006472)	promoter-TSS (NM_006472)	-281	NM_006472	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
129914	chr2	73282901	73283720	+	0	NA	intron (NM_001080410, intron 1 of 16)	intron (NM_001080410, intron 1 of 16)	1168	NM_001371389	150726		NM_001080410	ENSG00000163013	FBXO41	FBX41	F-box protein 41	protein-coding
140263	chr2	232306871	232307630	+	0	NA	intron (NR_046476, intron 14 of 20)	L2c|LINE|L2	-71501	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
59715	chr13	29771071	29771500	+	0	NA	intron (NM_007106, intron 3 of 4)	intron (NM_007106, intron 3 of 4)	79332	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
79185	chr16	318821	319080	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	33773	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
133074	chr2	112429651	112430080	+	0	NA	intron (NM_005054, intron 1 of 22).3	AluSx3|SINE|Alu	3749	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
154566	chr22	36256421	36256680	+	0	NA	intron (NM_001136541, intron 2 of 4)	intron (NM_001136541, intron 2 of 4)	3417	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
97087	chr17	42409701	42410300	+	0	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	13256	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
72662	chr15	38533301	38534000	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	31164	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
191143	chr6	4155651	4156210	+	0	NA	non-coding (NR_103764, exon 4 of 4)	non-coding (NR_103764, exon 4 of 4)	19858	NR_103764	100507506		NR_103764	ENSG00000234817	ECI2-DT	-	ECI2 divergent transcript	ncRNA
22758	chr1	224384671	224385030	+	0	NA	TTS (NM_025160)	TTS (NM_025160)	13461	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
104308	chr17	80899071	80899800	+	0	NA	intron (NM_020761, intron 20 of 33)	intron (NM_020761, intron 20 of 33)	71778	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
206014	chr7	26292901	26293250	+	0	NA	promoter-TSS (NM_001318199)	promoter-TSS (NM_001318199)	44	NM_001318199	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
25696	chr10	8898861	8899580	+	0	NA	intron (NR_131944, intron 1 of 3)	intron (NR_131944, intron 1 of 3)	1231	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
157519	chr22	45342901	45343300	+	0	NA	TTS (NM_001291501)	TTS (NM_001291501)	24657	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
37654	chr11	22666621	22667080	+	0	NA	non-coding (NR_147085, exon 1 of 11)	non-coding (NR_147085, exon 1 of 11)	239	NM_001351224	2620		NM_005256	ENSG00000148935	GAS2	GAS-2	growth arrest specific 2	protein-coding
117599	chr19	21851551	21852580	+	0	NA	promoter-TSS (NM_001256649)	promoter-TSS (NM_001256649)	0	NM_001256651	7594		NM_003423	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
1948	chr1	6553951	6555900	+	0	NA	promoter-TSS (NM_177540)	promoter-TSS (NM_177540)	-382	NM_177540	80835		NM_138697	ENSG00000173662	TAS1R1	GM148|GPR70|T1R1|TR1	taste 1 receptor member 1	protein-coding
173294	chr4	7074951	7075730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7276	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
149946	chr21	36327051	36327430	+	0	NA	intron (NM_001320445, intron 1 of 15)	AluSz|SINE|Alu	7043	NM_015358	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
23065	chr1	226635051	226635150	+	0	NA	intron (NM_002221, intron 7 of 7)	intron (NM_002221, intron 7 of 7)	39968	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
121320	chr19	46765551	46765850	+	0	NA	Intergenic	(TGTT)n|Simple_repeat|Simple_repeat	19114	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
73398	chr15	42608801	42609400	+	0	NA	intron (NM_020759, intron 3 of 32)	intron (NM_020759, intron 3 of 32)	33494	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
235631	chrX	48467471	48467750	+	0	NA	intron (NM_033518, intron 4 of 16)	intron (NM_033518, intron 4 of 16)	2650	NM_033518	92745		NM_033518	ENSG00000017483	SLC38A5	JM24|SN2|SNAT5|pp7194	solute carrier family 38 member 5	protein-coding
50750	chr12	49001071	49001230	+	0	NA	intron (NR_147179, intron 1 of 1)	intron (NR_147179, intron 1 of 1)	-1775	NM_015086	23109		NM_015086	ENSG00000181418	DDN	-	dendrin	protein-coding
115360	chr19	15227001	15227200	+	0	NA	3' UTR (NM_001142886, exon 8 of 8)	3' UTR (NM_001142886, exon 8 of 8)	5348	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
199178	chr6	111758501	111760900	+	0	NA	promoter-TSS (NM_153048)	promoter-TSS (NM_153048)	217	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
200196	chr6	131116721	131117000	+	0	NA	Intergenic	MER53|DNA|hAT	-18607	NR_164832	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
96477	chr17	40264571	40264930	+	0	NA	exon (NM_133264, exon 5 of 8)	exon (NM_133264, exon 5 of 8)	-23129	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
184798	chr5	111226901	111227100	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	2616	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
34324	chr10	132162101	132162730	+	0	NA	intron (NM_001323090, intron 19 of 23)	intron (NM_001323090, intron 19 of 23)	-24533	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
100690	chr17	63825321	63825600	+	0	NA	intron (NM_017647, intron 6 of 20)	intron (NM_017647, intron 6 of 20)	-1971	NM_002805	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
136083	chr2	173286201	173286400	+	0	NA	Intergenic	Intergenic	-4264	NR_033882	339751		NR_033882	ENSG00000238133	MAP3K20-AS1	MLK7-AS1	MAP3K20 antisense RNA 1	ncRNA
20144	chr1	192578501	192578730	+	0	NA	intron (NM_002922, intron 4 of 4)	intron (NM_002922, intron 4 of 4)	2842	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
12411	chr1	101332671	101332930	+	0	NA	intron (NR_126402, intron 1 of 4)	intron (NR_126402, intron 1 of 4)	8963	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
109263	chr19	534151	534600	+	0	NA	intron (NM_004359, intron 1 of 4)	intron (NM_004359, intron 1 of 4)	2615	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
23090	chr1	226659021	226659750	+	0	NA	intron (NR_103784, intron 1 of 1)	intron (NR_103784, intron 1 of 1)	15683	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
230808	chr9	129024271	129024930	+	0	NA	intron (NM_001369914, intron 1 of 10)	AluJo|SINE|Alu	3731	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
146594	chr20	50115751	50116800	+	0	NA	promoter-TSS (NM_022442)	promoter-TSS (NM_022442)	-318	NM_022442	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
127824	chr2	44942471	44943530	+	0	NA	intron (NM_005413, intron 1 of 1)	CpG	-1122	NR_103786	100506108		NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA
30068	chr10	73870301	73870500	+	0	NA	intron (NR_160045, intron 1 of 17)	intron (NR_160045, intron 1 of 17)	4155	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
104971	chr17	81976501	81978730	+	0	NA	promoter-TSS (NM_001330528)	promoter-TSS (NM_001330528)	-14	NM_001330528	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
216816	chr8	22570521	22570780	+	0	NA	intron (NM_005775, intron 17 of 20)	intron (NM_005775, intron 17 of 20)	4921	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
73156	chr15	41428401	41428600	+	0	NA	intron (NM_015138, intron 1 of 17)	AluY|SINE|Alu	11396	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
161626	chr3	43288351	43289180	+	0	NA	intron (NM_001330750, intron 1 of 4)	intron (NM_001330750, intron 1 of 4)	2225	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
31766	chr10	98031351	98031450	+	0	NA	promoter-TSS (NM_018058)	promoter-TSS (NM_018058)	-572	NM_001206528	55118		NM_018058	ENSG00000095713	CRTAC1	ASPIC|ASPIC1|CEP-68|CEP68|LOTUS	cartilage acidic protein 1	protein-coding
114518	chr19	12803201	12803600	+	0	NA	Intergenic	Intergenic	-1600	NM_005809	7001		NM_005809	ENSG00000167815	PRDX2	HEL-S-2a|NKEF-B|NKEFB|PRP|PRX2|PRXII|PTX1|TDPX1|TPX1|TSA	peroxiredoxin 2	protein-coding
154598	chr22	36288751	36289200	+	0	NA	intron (NM_002473, intron 32 of 40)	intron (NM_002473, intron 32 of 40)	-2068	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
13383	chr1	113933501	113934030	+	0	NA	intron (NM_001369806, intron 1 of 15)	AluJb|SINE|Alu	3921	NM_001369807	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
69650	chr14	97917301	97917500	+	0	NA	Intergenic	Intergenic	60724	NR_015430	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
121577	chr19	47276401	47277000	+	0	NA	TTS (NR_037675)	TTS (NR_037675)	1815	NM_178511	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
216531	chr8	21038771	21040480	+	0	NA	Intergenic	Intergenic	65639	NR_033894	286114		NR_033894	ENSG00000253199	LINC02153	-	long intergenic non-protein coding RNA 2153	ncRNA
133938	chr2	130531901	130532280	+	0	NA	Intergenic	AluSx3|SINE|Alu	10868	NM_001079530	653275		NM_001079530	ENSG00000152093	CFC1B	-	cryptic, EGF-CFC family member 1B	protein-coding
106030	chr18	8611871	8612030	+	0	NA	intron (NM_001025300, intron 1 of 5)	intron (NM_001025300, intron 1 of 5)	2505	NM_001025300	201475		NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding
197258	chr6	70412151	70412250	+	0	NA	TTS (NR_147708)	TTS (NR_147708)	-1204	NM_001331006	57579		NM_020819	ENSG00000082269	FAM135A	KIAA1411	family with sequence similarity 135 member A	protein-coding
225492	chr9	35649311	35650100	+	0	NA	3' UTR (NM_014450, exon 5 of 5)	3' UTR (NM_014450, exon 5 of 5)	1226	NM_014450	27240		NM_014450	ENSG00000137078	SIT1	SIT|SIT-R	signaling threshold regulating transmembrane adaptor 1	protein-coding
93259	chr17	17994051	17994550	+	0	NA	exon (NM_001130091, exon 8 of 14)	exon (NM_001130091, exon 8 of 14)	21438	NM_001130091	83450		NM_031294	ENSG00000171962	DRC3	CFAP134|LRRC48	dynein regulatory complex subunit 3	protein-coding
186464	chr5	137888621	137889730	+	0	NA	promoter-TSS (NM_001258449)	promoter-TSS (NM_001258449)	-282	NM_001300921	27039		NM_014386	ENSG00000078795	PKD2L2	TRPP5	polycystin 2 like 2, transient receptor potential cation channel	protein-coding
160523	chr3	30649601	30649800	+	0	NA	intron (NM_001024847, intron 3 of 7)	intron (NM_001024847, intron 3 of 7)	43099	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
51731	chr12	53222501	53222850	+	0	NA	intron (NM_001243730, intron 2 of 8)	intron (NM_001243730, intron 2 of 8)	-2313	NM_001243732	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
55739	chr12	108334121	108334580	+	0	NA	intron (NM_004072, intron 1 of 2)	intron (NM_004072, intron 1 of 2)	4961	NM_001142343	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
187719	chr5	143398901	143399350	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	4158	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
913	chr1	1696701	1697130	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3024	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
76705	chr15	75836751	75837450	+	0	NA	Intergenic	Intergenic	-6347	NM_001284382	92912		NM_173469	ENSG00000140367	UBE2Q2	-	ubiquitin conjugating enzyme E2 Q2	protein-coding
200168	chr6	130577201	130577700	+	0	NA	Intergenic	Intergenic	140333	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
68602	chr14	89599921	89600380	+	0	NA	intron (NM_001085471, intron 1 of 6)	L1MEg|LINE|L1	19015	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
184766	chr5	110053671	110054700	+	0	NA	Intergenic	Intergenic	171003	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
217188	chr8	26318971	26319380	+	0	NA	intron (NM_002717, intron 2 of 9)	L1MB3|LINE|L1	25959	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
92445	chr17	8468121	8468380	+	0	NA	TTS (NM_001330129)	TTS (NM_001330129)	32366	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
55568	chr12	106227561	106228250	+	0	NA	Intergenic	Intergenic	20115	NM_006825	10970		NM_006825	ENSG00000136026	CKAP4	CLIMP-63|CLIMP63|ERGIC-63|p63	cytoskeleton associated protein 4	protein-coding
191392	chr6	7909501	7911630	+	0	NA	promoter-TSS (NM_001145549)	promoter-TSS (NM_001145549)	223	NM_030810	81567		NM_022085	ENSG00000239264	TXNDC5	ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364	thioredoxin domain containing 5	protein-coding
81173	chr16	4461271	4461830	+	0	NA	TTS (NM_001351996)	TTS (NM_001351996)	13075	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
164045	chr3	53350421	53350780	+	0	NA	Intergenic	LTR75_1|LTR|ERV1	-3057	NM_001290204	55802		NM_018403	ENSG00000272886	DCP1A	HSA275986|Nbla00360|SMAD4IP1|SMIF	decapping mRNA 1A	protein-coding
206387	chr7	30740121	30741130	+	0	NA	Intergenic	Intergenic	-11510	NM_006774	11185		NM_006774	ENSG00000241644	INMT	TEMT	indolethylamine N-methyltransferase	protein-coding
136389	chr2	176127871	176128030	+	0	NA	Intergenic	Intergenic	-1755	NM_019558	3234		NM_019558	ENSG00000175879	HOXD8	HOX4|HOX4E|HOX5.4	homeobox D8	protein-coding
138891	chr2	217786651	217786950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-30207	NR_026597	729582		NR_026597	ENSG00000231672	DIRC3	-	disrupted in renal carcinoma 3	ncRNA
165443	chr3	98551801	98552280	+	0	NA	Intergenic	MIR3|SINE|MIR	20062	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
26431	chr10	17237821	17239350	+	0	NA	TTS (NM_003380)	TTS (NM_003380)	-8600	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
8005	chr1	38003901	38004620	+	0	NA	intron (NM_004468, intron 1 of 5)	intron (NM_004468, intron 1 of 5)	1254	NM_004468	2275		NM_004468	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
153056	chr22	23283251	23283350	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	20533	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
235709	chrX	48896851	48898750	+	0	NA	promoter-TSS (NM_005710)	promoter-TSS (NM_005710)	-112	NM_001032383	10084		NM_005710	ENSG00000102103	PQBP1	MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS	polyglutamine binding protein 1	protein-coding
105707	chr18	2689321	2690150	+	0	NA	intron (NM_015295, intron 7 of 47)	AluJo|SINE|Alu	34009	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
34968	chr11	496601	497430	+	0	NA	intron (NM_203389, intron 8 of 9).2	intron (NM_203389, intron 8 of 9).2	9753	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
178326	chr4	145693771	145693930	+	0	NA	intron (NM_001080531, intron 1 of 5)	SVA_F|Retroposon|SVA	13704	NM_001080531	646603		NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
139364	chr2	221500001	221500350	+	0	NA	intron (NM_004438, intron 4 of 17)	MIR|SINE|MIR	72129	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
75440	chr15	65808771	65809380	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-16782	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
123742	chr19	55066801	55067000	+	0	NA	intron (NM_138412, intron 1 of 7).5	MLT1G1|LTR|ERVL-MaLR	2620	NM_138412	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
19403	chr1	174162521	174163150	+	0	NA	intron (NM_001366447, intron 1 of 20)	L1PA2|LINE|L1	3315	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
27468	chr10	32024121	32024580	+	0	NA	intron (NM_004521, intron 15 of 25)	AluYa5|SINE|Alu	32075	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
27100	chr10	27506421	27506750	+	0	NA	intron (NR_046172, intron 1 of 5)	AluJo|SINE|Alu	2281	NM_021252	22931		NM_021252	ENSG00000099246	RAB18	RAB18LI1|WARBM3	RAB18, member RAS oncogene family	protein-coding
227849	chr9	93509071	93509230	+	0	NA	intron (NM_001286722, intron 5 of 17)	intron (NM_001286722, intron 5 of 17)	-55549	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
187687	chr5	143329751	143330050	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	73383	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
60774	chr13	45123751	45124250	+	0	NA	intron (NM_004128, intron 1 of 7)	intron (NM_004128, intron 1 of 7)	3490	NM_004128	2963		NM_004128	ENSG00000188342	GTF2F2	BTF4|RAP30|TF2F2|TFIIF	general transcription factor IIF subunit 2	protein-coding
228220	chr9	97898851	97899450	+	0	NA	intron (NM_001371657, intron 5 of 5)	intron (NM_001371657, intron 5 of 5)	23031	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
189489	chr5	173142701	173143450	+	0	NA	Intergenic	AluY|SINE|Alu	-1456	NM_013979	662		NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2 interacting protein 1	protein-coding
94711	chr17	30708301	30709600	+	0	NA	promoter-TSS (NR_024187)	promoter-TSS (NR_024187)	-658	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
185397	chr5	128196801	128197230	+	0	NA	Intergenic	Intergenic	113249	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
229930	chr9	126637111	126638280	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	23767	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
59927	chr13	31137421	31137680	+	0	NA	intron (NM_001286503, intron 16 of 16)	intron (NM_001286503, intron 16 of 16)	24354	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
80223	chr16	2182351	2183030	+	0	NA	intron (NM_020764, intron 16 of 19)	intron (NM_020764, intron 16 of 19)	13915	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
88840	chr16	87496441	87497350	+	0	NA	intron (NR_110943, intron 1 of 3)	intron (NR_110943, intron 1 of 3)	2708	NR_110943	101928737		NR_110943	ENSG00000288568	ZCCHC14-DT	-	ZCCHC14 divergent transcript	ncRNA
205135	chr7	7136301	7136850	+	0	NA	Intergenic	MIR|SINE|MIR	-39789	NR_034022	100131257		NR_034022		LOC100131257	-	zinc finger protein 655 pseudogene	pseudo
60615	chr13	42161451	42161550	+	0	NA	intron (NR_123715, intron 7 of 31)	intron (NR_123715, intron 7 of 31)	23442	NR_123714	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
37333	chr11	14844401	14844600	+	0	NA	intron (NM_001363569, intron 12 of 15)	L1PA3|LINE|L1	47171	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
48359	chr12	9418021	9418280	+	0	NA	non-coding (NR_033399, exon 27 of 27)	non-coding (NR_033399, exon 27 of 27)	-10736	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
8495	chr1	40838101	40838300	+	0	NA	intron (NM_172163, intron 12 of 12)	CpG	24163	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
239133	chrY	11313421	11314000	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1107880	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
123411	chr19	54020201	54020400	+	0	NA	Intergenic	Intergenic	28663	NM_031897	59285		NM_031897	ENSG00000130433	CACNG6	-	calcium voltage-gated channel auxiliary subunit gamma 6	protein-coding
60432	chr13	40996951	40997050	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	-14101	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
172125	chr4	1176151	1176450	+	0	NA	intron (NM_001199021, intron 2 of 7)	intron (NM_001199021, intron 2 of 7)	-3089	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
220727	chr8	102097381	102098450	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	26419	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
211439	chr7	105069671	105069930	+	0	NA	intron (NM_182931, intron 6 of 26)	L1MD1|LINE|L1	55595	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
48157	chr12	7931551	7931650	+	0	NA	intron (NM_006931, intron 3 of 9)	intron (NM_006931, intron 3 of 9)	4587	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
2616	chr1	10170071	10170530	+	0	NA	intron (NM_001105562, intron 24 of 27)	intron (NM_001105562, intron 24 of 27)	-40270	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
147335	chr20	58205901	58206300	+	0	NA	Intergenic	Intergenic	22553	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
73028	chr15	40787301	40788100	+	0	NA	intron (NM_018163, intron 1 of 10)	intron (NM_018163, intron 1 of 10)	17720	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
29763	chr10	72245071	72245430	+	0	NA	Intergenic	Intergenic	-28116	NM_001369099	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
17708	chr1	158716451	158716550	+	0	NA	TTS (NM_001005327)	TTS (NM_001005327)	1615	NM_001005327	391114		NM_001005327	ENSG00000203757	OR6K3	OR1-18	olfactory receptor family 6 subfamily K member 3	protein-coding
170994	chr3	194671471	194671650	+	0	NA	intron (NM_018385, intron 1 of 13)	intron (NM_018385, intron 1 of 13)	631	NM_018385	55341		NM_018385	ENSG00000041802	LSG1	-	large 60S subunit nuclear export GTPase 1	protein-coding
34094	chr10	125515001	125515200	+	0	NA	Intergenic	Intergenic	-59271	NR_023362	100169752		NR_023362	ENSG00000237675	TEX36-AS1	-	TEX36 antisense RNA 1	ncRNA
149979	chr21	36702851	36703150	+	0	NA	intron (NM_005069, intron 1 of 10)	intron (NM_005069, intron 1 of 10)	3885	NM_009586	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
184330	chr5	96942071	96943100	+	0	NA	intron (NM_005575, intron 1 of 17)	AluSx|SINE|Alu	6505	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
195059	chr6	35500801	35501000	+	0	NA	intron (NM_001289395, intron 12 of 13)	intron (NM_001289395, intron 12 of 13)	-3821	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
231122	chr9	129830521	129830980	+	0	NA	intron (NM_016520, intron 6 of 8)	AluSg7|SINE|Alu	4525	NM_016520	51759		NM_016520	ENSG00000136819	C9orf78	CSU2|HCA59|HSPC220|TLS1|bA409K20.3	chromosome 9 open reading frame 78	protein-coding
176678	chr4	100548401	100548600	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-30478	NM_016242	51705		NM_016242	ENSG00000164035	EMCN	EMCN2|MUC14	endomucin	protein-coding
213525	chr7	139080951	139081530	+	0	NA	intron (NM_020119, intron 3 of 12)	(GT)n|Simple_repeat|Simple_repeat	28480	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
200072	chr6	130099251	130099350	+	0	NA	intron (NM_001007102, intron 17 of 21)	intron (NM_001007102, intron 17 of 21)	79656	NM_001346550	84456		NM_032438	ENSG00000198945	L3MBTL3	MBT-1|MBT1	L3MBTL histone methyl-lysine binding protein 3	protein-coding
60254	chr13	40590951	40591530	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	75401	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
23320	chr1	228092271	228093530	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	-4363	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
185891	chr5	132749251	132750030	+	0	NA	intron (NM_001039780, intron 3 of 5)	intron (NM_001039780, intron 3 of 5)	2195	NM_001287252	645121		NM_001039780	ENSG00000205089	CCNI2	-	cyclin I family member 2	protein-coding
93779	chr17	20267201	20267800	+	0	NA	intron (NM_001033555, intron 10 of 12)	intron (NM_001033555, intron 10 of 12)	-53674	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
42768	chr11	72744851	72745150	+	0	NA	intron (NM_001040118, intron 1 of 34)	intron (NM_001040118, intron 1 of 34)	7389	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
173788	chr4	17613901	17615380	+	0	NA	promoter-TSS (NM_025205)	promoter-TSS (NM_025205)	-1	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
2783	chr1	10888301	10889180	+	0	NA	Intergenic	CpG	77947	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
193372	chr6	30333071	30333580	+	0	NA	intron (NM_001369523, intron 5 of 8).5	MER20B|DNA|hAT-Charlie	4014	NM_001199119	202658		NM_001199119	ENSG00000248167	TRIM39-RPP21	TRIM39R	TRIM39-RPP21 readthrough	protein-coding
74606	chr15	60585841	60587100	+	0	NA	intron (NM_134260, intron 1 of 11)	(GT)n|Simple_repeat|Simple_repeat	6056	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
17342	chr1	156484051	156484150	+	0	NA	intron (NM_005920, intron 1 of 11)	HY1|scRNA|scRNA	6587	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
115113	chr19	14352021	14352280	+	0	NA	intron (NR_134908, intron 1 of 3)	AluSz|SINE|Alu	11840	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
155193	chr22	37809771	37809930	+	0	NA	intron (NM_014291, intron 1 of 8)	intron (NM_014291, intron 1 of 8)	1916	NM_014291	23464		NM_014291	ENSG00000100116	GCAT	KBL	glycine C-acetyltransferase	protein-coding
150715	chr21	43731501	43732330	+	0	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	-9571	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
110795	chr19	2455151	2455250	+	0	NA	intron (NM_032737, intron 1 of 11)	intron (NM_032737, intron 1 of 11)	1759	NM_032737	84823		NM_032737	ENSG00000176619	LMNB2	EPM9|LAMB2|LMN2|MCPH27	lamin B2	protein-coding
103246	chr17	77525721	77526180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1051	NR_148967	400622		NR_148967	ENSG00000267665	LOC400622	-	uncharacterized LOC400622	ncRNA
43055	chr11	74388721	74389330	+	0	NA	intron (NM_173582, intron 1 of 13)	intron (NM_173582, intron 1 of 13)	9408	NM_173582	283209		NM_173582	ENSG00000165434	PGM2L1	BM32A|NEDHFS|PMMLP	phosphoglucomutase 2 like 1	protein-coding
99499	chr17	50195121	50195680	+	0	NA	intron (NM_000088, intron 18 of 50)	intron (NM_000088, intron 18 of 50)	6231	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
7779	chr1	36227121	36227380	+	0	NA	intron (NM_001321471, intron 2 of 12)	intron (NM_001321471, intron 2 of 12)	2807	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
30994	chr10	88152571	88153100	+	0	NA	Intergenic	Intergenic	289210	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
208399	chr7	66693451	66693850	+	0	NA	intron (NM_001367745, intron 1 of 7)	intron (NM_001367745, intron 1 of 7)	11484	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
206881	chr7	37663851	37663950	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-19866	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
138397	chr2	204545221	204546100	+	0	NA	5' UTR (NM_057177, exon 1 of 22)	5' UTR (NM_057177, exon 1 of 22)	185	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
123597	chr19	54476521	54476780	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-3354	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
111108	chr19	3208401	3209230	+	0	NA	3' UTR (NM_001321463, exon 15 of 15)	3' UTR (NM_001321463, exon 15 of 15)	-15846	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
9847	chr1	54232621	54232880	+	0	NA	intron (NM_145716, intron 14 of 17)	SVA_F|Retroposon|SVA	-3693	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
230977	chr9	129468501	129469080	+	0	NA	Intergenic	Intergenic	-19870	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
100979	chr17	64539801	64540400	+	0	NA	Intergenic	AluSx|SINE|Alu	33123	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
15062	chr1	148446971	148447130	+	0	NA	intron (NR_027468, intron 1 of 4)	Kanga11a|DNA|TcMar-Tc2	12870	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
42539	chr11	71604951	71605480	+	0	NA	Intergenic	Intergenic	-22340	NM_001005405	440051		NM_001005405	ENSG00000204571	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
184284	chr5	96804221	96804500	+	0	NA	intron (NM_001198541, intron 1 of 18)	intron (NM_001198541, intron 1 of 18)	3585	NM_001040458	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
53013	chr12	57528171	57528900	+	0	NA	exon (NM_052897, exon 10 of 13)	exon (NM_052897, exon 10 of 13)	5711	NM_052897	114785		NM_052897	ENSG00000166987	MBD6	-	methyl-CpG binding domain protein 6	protein-coding
182519	chr5	65475971	65476130	+	0	NA	intron (NM_197941, intron 1 of 24)	MLT1F2|LTR|ERVL-MaLR	5870	NR_135689	11174		NM_014273	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein-coding
143963	chr20	32831901	32833100	+	0	NA	intron (NM_012325, intron 2 of 6)	AluJb|SINE|Alu	12546	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
83540	chr16	27723001	27723200	+	0	NA	intron (NM_015202, intron 14 of 27)	L2c|LINE|L2	-4071	NR_147898	100128079		NR_147898		LOC100128079	-	uncharacterized LOC100128079	ncRNA
166937	chr3	125140201	125140600	+	0	NA	intron (NM_024628, intron 5 of 13)	intron (NM_024628, intron 5 of 13)	11152	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
77373	chr15	82832501	82833100	+	0	NA	intron (NM_001080435, intron 9 of 9)	intron (NM_001080435, intron 9 of 9)	23172	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
58988	chr13	19984701	19985650	+	0	NA	intron (NM_001353162, intron 4 of 26)	AluJb|SINE|Alu	26151	NM_001353161	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
9545	chr1	51516551	51517150	+	0	NA	intron (NM_001981, intron 1 of 24)	L2c|LINE|L2	2416	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
50270	chr12	46342601	46343030	+	0	NA	Intergenic	L1M1|LINE|L1	29958	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
148513	chr20	64087971	64088130	+	0	NA	intron (NM_001200019, intron 2 of 5)	intron (NM_001200019, intron 2 of 5)	3051	NM_001200019	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
37215	chr11	14380951	14381530	+	0	NA	Intergenic	CpG	-16734	NM_001177314	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
177245	chr4	108638051	108638150	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	-12485	NM_001267817	58505		NM_021227	ENSG00000198856	OSTC	DC2	oligosaccharyltransferase complex non-catalytic subunit	protein-coding
135265	chr2	159749121	159749380	+	0	NA	intron (NM_001376253, intron 4 of 7)	AluSx|SINE|Alu	15286	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
54809	chr12	94644151	94644800	+	0	NA	intron (NM_020698, intron 1 of 3)	intron (NM_020698, intron 1 of 3)	6082	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
12150	chr1	100135051	100135150	+	0	NA	intron (NM_019083, intron 1 of 10)	MER20|DNA|hAT-Charlie	1950	NR_135078	54482		NM_019083	ENSG00000122435	TRMT13	CCDC76	tRNA methyltransferase 13 homolog	protein-coding
90528	chr17	1480001	1480200	+	0	NA	intron (NM_001080779, intron 7 of 31)	AluSx1|SINE|Alu	5301	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
22278	chr1	212738451	212738750	+	0	NA	exon (NM_015471, exon 6 of 6)	exon (NM_015471, exon 6 of 6)	-38760	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
112799	chr19	7490571	7490730	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-1250	NM_001300881	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
152719	chr22	21655851	21655950	+	0	NA	intron (NR_169731, intron 3 of 3)	AluSp|SINE|Alu	-1860	NR_169732	107985532		NR_169729		LOC107985532	-	uncharacterized LOC107985532	pseudo
162041	chr3	46700001	46700400	+	0	NA	intron (NM_001370524, intron 1 of 3)	intron (NM_001370524, intron 1 of 3)	-1192	NM_147196	259236		NM_147196	ENSG00000181585	TMIE	DFNB6	transmembrane inner ear	protein-coding
233026	chr9	137026771	137027150	+	0	NA	promoter-TSS (NM_207511)	promoter-TSS (NM_207511)	-504	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
222428	chr8	134710801	134711080	+	0	NA	intron (NM_001289394, intron 1 of 16)	Tigger4|DNA|TcMar-Tigger	2091	NM_020863	57623		NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
77425	chr15	84080051	84080630	+	0	NA	intron (NR_036652, intron 1 of 9)	CpG	153	NR_036652	648809		NR_036652		EFL1P1	EFTUD1P1|FAM42B|HsT19321	elongation factor like GTPase 1 pseudogene 1	pseudo
6793	chr1	30790721	30791100	+	0	NA	Intergenic	L1ME4c|LINE|L1	-33136	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
227876	chr9	93674601	93674850	+	0	NA	intron (NM_005392, intron 18 of 21)	intron (NM_005392, intron 18 of 21)	79884	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
171274	chr3	195874751	195875050	+	0	NA	intron (NM_005781, intron 9 of 14)	CpG	7495	NR_106887	102465977		NR_106887	ENSG00000276489	MIR6829	hsa-mir-6829	microRNA 6829	ncRNA
86291	chr16	58621921	58623130	+	0	NA	intron (NM_206999, intron 1 of 30)	intron (NM_206999, intron 1 of 30)	7301	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
58239	chr12	128742551	128742850	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	81258	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
102975	chr17	76720021	76720580	+	0	NA	intron (NM_015167, intron 5 of 5)	intron (NM_015167, intron 5 of 5)	-5741	NM_001378349	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
141583	chr2	241610021	241611400	+	0	NA	intron (NM_015963, intron 2 of 5)	intron (NM_015963, intron 2 of 5)	6791	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
140686	chr2	234243921	234244200	+	0	NA	Intergenic	MER51B|LTR|ERV1	193358	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
131094	chr2	89826501	89826780	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-188733	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
155342	chr22	38228671	38229380	+	0	NA	intron (NM_001195071, intron 5 of 8)	intron (NM_001195071, intron 5 of 8)	-4305	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
208093	chr7	56105051	56105900	+	0	NA	intron (NM_001320327, intron 1 of 3)	L2a|LINE|L2	1001	NM_016139	51142		NM_016139	ENSG00000106153	CHCHD2	C7orf17|MIX17B|MNRR1|NS2TP|PARK22	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding
70481	chr14	102081651	102082030	+	0	NA	intron (NM_001017963, intron 11 of 11)	intron (NM_001017963, intron 11 of 11)	5204	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
180515	chr5	14400671	14401200	+	0	NA	intron (NR_134469, intron 30 of 56)	intron (NR_134469, intron 30 of 56)	-63048	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
52637	chr12	56278171	56278800	+	0	NA	intron (NM_004077, intron 6 of 10)	AluSc|SINE|Alu	11159	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
16646	chr1	155135451	155137680	+	0	NA	intron (NM_001287587, intron 2 of 5)	AluY|SINE|Alu	713	NM_001287587	55974		NM_018845	ENSG00000169241	SLC50A1	HsSWEET1|RAG1AP1|SCP|SWEET1|slv	solute carrier family 50 member 1	protein-coding
115736	chr19	16264151	16264530	+	0	NA	Intergenic	AluJr|SINE|Alu	-60486	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
51120	chr12	50087871	50088050	+	0	NA	intron (NM_139071, intron 5 of 11)	intron (NM_139071, intron 5 of 11)	2618	NM_003076	6602		NM_003076	ENSG00000066117	SMARCD1	BAF60A|CRACD1|CSS11|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding
199062	chr6	111579921	111580180	+	0	NA	intron (NR_034108, intron 3 of 3)	intron (NR_034108, intron 3 of 3)	-12771	NM_001164283	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
80706	chr16	3070701	3071250	+	0	NA	Intergenic	THE1D-int|LTR|ERVL-MaLR	5191	NM_001012636	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
81008	chr16	4161071	4161230	+	0	NA	Intergenic	L1MB7|LINE|L1	-44708	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
170129	chr3	183306851	183307430	+	0	NA	intron (NM_015078, intron 10 of 29)	intron (NM_015078, intron 10 of 29)	53887	NM_032047	84002		NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
221453	chr8	124370501	124370800	+	0	NA	intron (NM_194291, intron 1 of 6)	intron (NM_194291, intron 1 of 6)	2049	NM_194291	157378		NM_194291	ENSG00000164983	TMEM65	-	transmembrane protein 65	protein-coding
49273	chr12	19552351	19553300	+	0	NA	Intergenic	AluSq2|SINE|Alu	112226	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
237486	chrX	119870551	119872680	+	0	NA	promoter-TSS (NM_004541)	promoter-TSS (NM_004541)	118	NM_006978	7737		NM_006978	ENSG00000125352	RNF113A	Cwc24|RNF113|TTD5|ZNF183	ring finger protein 113A	protein-coding
196528	chr6	43817351	43817450	+	0	NA	Intergenic	Intergenic	34933	NR_149142	285857		NR_149142	ENSG00000283215	LINC02537	-	long intergenic non-protein coding RNA 2537	ncRNA
101299	chr17	66440501	66440700	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-23746	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
231297	chr9	130044351	130044450	+	0	NA	Intergenic	AluJr|SINE|Alu	-1211	NM_001363755	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
130238	chr2	84833851	84834150	+	0	NA	intron (NM_001080824, intron 3 of 5)	intron (NM_001080824, intron 3 of 5)	47084	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
46594	chr11	128524101	128524300	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	1810	NR_106738	102466104		NR_106738	ENSG00000276176	MIR6090	hsa-mir-6090	microRNA 6090	ncRNA
10577	chr1	67336801	67337550	+	0	NA	intron (NM_001374259, intron 8 of 16)	intron (NM_001374259, intron 8 of 16)	29302	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
176351	chr4	88381401	88381980	+	0	NA	intron (NM_017912, intron 1 of 22)	AluSg|SINE|Alu	2838	NM_001165136	55008		NM_017912	ENSG00000138642	HERC6	-	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein-coding
47458	chr12	3809571	3809730	+	0	NA	non-coding (NR_104461, exon 9 of 9)	non-coding (NR_104461, exon 9 of 9)	-56541	NM_001144958	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
45177	chr11	117235201	117235400	+	0	NA	intron (NM_207343, intron 2 of 14)	AluY|SINE|Alu	2564	NM_001077239	257160		NM_207343	ENSG00000167257	RNF214	-	ring finger protein 214	protein-coding
49086	chr12	14447271	14447530	+	0	NA	intron (NM_181352, intron 6 of 14)	AluSx1|SINE|Alu	62119	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
225985	chr9	41266151	41266250	+	0	NA	Intergenic	Intergenic	-32365	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
152687	chr22	21623201	21623400	+	0	NA	non-coding (NR_046082, exon 4 of 4)	non-coding (NR_046082, exon 4 of 4)	6722	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
195353	chr6	36637101	36637300	+	0	NA	Intergenic	Intergenic	-14688	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
186008	chr5	133944271	133944580	+	0	NA	Intergenic	Intergenic	24200	NM_020199	56951		NM_020199	ENSG00000113583	C5orf15	HTGN29|KCT2	chromosome 5 open reading frame 15	protein-coding
213847	chr7	141976021	141976580	+	0	NA	Intergenic	Intergenic	-2527	NM_176817	5726		NM_176817	ENSG00000257138	TAS2R38	PTC|T2R38|T2R61|THIOT	taste 2 receptor member 38	protein-coding
86562	chr16	67201751	67202230	+	0	NA	TTS (NR_029887)	TTS (NR_029887)	405	NR_029887	442901		NR_029887	ENSG00000207948	MIR328	MIRN328|hsa-mir-328|mir-328	microRNA 328	ncRNA
28369	chr10	47256701	47256980	+	0	NA	Intergenic	LTR45B|LTR|ERV1	-43357	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
1712	chr1	5448651	5448750	+	0	NA	Intergenic	Intergenic	414041	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
109686	chr19	1039401	1040400	+	0	NA	promoter-TSS (NM_019112)	promoter-TSS (NM_019112)	-207	NM_019112	10347		NM_019112	ENSG00000064687	ABCA7	ABCA-SSN|ABCX|AD9	ATP binding cassette subfamily A member 7	protein-coding
209180	chr7	75375871	75376030	+	0	NA	Intergenic	Intergenic	16750	NR_040583	54441		NM_018991	ENSG00000290951	STAG3L1	STAG3L1P|STAG3L2|STAG3L3	STAG3 cohesin complex component like 1 (pseudogene)	pseudo
210038	chr7	94449201	94449500	+	0	NA	Intergenic	Intergenic	54455	NM_000089	1278		NM_000089	ENSG00000164692	COL1A2	EDSARTH2|EDSCV|OI4	collagen type I alpha 2 chain	protein-coding
77522	chr15	84699471	84699980	+	0	NA	intron (NM_001271920, intron 1 of 6)	FLAM_C|SINE|Alu	16414	NM_014300	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
4621	chr1	22103851	22104210	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	39067	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
151017	chr21	44478671	44478830	+	0	NA	Intergenic	Intergenic	-6821	NR_155204	111216286		NR_155204		LINC02575	-	long intergenic non-protein coding RNA 2575	ncRNA
111097	chr19	3194701	3195100	+	0	NA	intron (NM_020170, intron 3 of 14)	AluJr|SINE|Alu	8970	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
226443	chr9	71685201	71686900	+	0	NA	intron (NM_001135820, intron 21 of 22)	intron (NM_001135820, intron 21 of 22)	82463	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
127373	chr2	39379701	39379980	+	0	NA	intron (NM_003618, intron 1 of 33)	intron (NM_003618, intron 1 of 33)	57445	NM_003618	8491		NM_003618	ENSG00000011566	MAP4K3	GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding
61434	chr13	51830101	51830300	+	0	NA	intron (NM_001351003, intron 2 of 4)	MER34|LTR|ERV1	14977	NM_001351003	283521		NM_178515	ENSG00000281106	TMEM272	LINC00282|NCRNA00282	transmembrane protein 272	protein-coding
78741	chr15	98854271	98854650	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	70034	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
193695	chr6	31122651	31123150	+	0	NA	intron (NM_014068, intron 1 of 5).5	intron (NM_014068, intron 1 of 5).5	-2454	NM_001264	1041		NM_001264	ENSG00000204539	CDSN	HTSS|HTSS1|HYPT2|PSS|PSS1	corneodesmosin	protein-coding
224990	chr9	33108521	33108800	+	0	NA	promoter-TSS (NR_162131)	promoter-TSS (NR_162131)	-32	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
220358	chr8	99703971	99704530	+	0	NA	intron (NM_152564, intron 36 of 61)	intron (NM_152564, intron 36 of 61)	-167389	NR_030596	100126309		NR_030596	ENSG00000216069	MIR875	MIRN875|hsa-mir-875	microRNA 875	ncRNA
152552	chr22	21003701	21004150	+	0	NA	TTS (NR_027052)	TTS (NR_027052)	-1807	NM_030573	80764		NM_030573	ENSG00000184436	THAP7	-	THAP domain containing 7	protein-coding
171341	chr3	196046301	196046500	+	0	NA	Intergenic	L1ME3A|LINE|L1	35690	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
24339	chr1	239628951	239629300	+	0	NA	promoter-TSS (NM_000740)	promoter-TSS (NM_000740)	52	NM_000740	1131		NM_000740	ENSG00000133019	CHRM3	EGBRS|HM3|PBS|m3AChR	cholinergic receptor muscarinic 3	protein-coding
19909	chr1	184075401	184075680	+	0	NA	intron (NM_001363643, intron 3 of 3)	intron (NM_001363643, intron 3 of 3)	23810	NR_125335	116461		NM_052965	ENSG00000198860	TSEN15	C1orf19|PCH2F|sen15	tRNA splicing endonuclease subunit 15	protein-coding
61252	chr13	50014521	50014850	+	0	NA	promoter-TSS (NM_199464)	promoter-TSS (NM_199464)	-759	NM_199464	283518		NM_173605	ENSG00000198553	KCNRG	DLTET	potassium channel regulator	protein-coding
203545	chr7	880271	880630	+	0	NA	intron (NM_015949, intron 1 of 8)	intron (NM_015949, intron 1 of 8)	3896	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
158087	chr22	49993251	49994030	+	0	NA	3' UTR (NM_001001694, exon 15 of 15)	3' UTR (NM_001001694, exon 15 of 15)	19125	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
202794	chr6	159109601	159110350	+	0	NA	Intergenic	Intergenic	-59425	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
166492	chr3	114304821	114305680	+	0	NA	intron (NM_173799, intron 3 of 3)	intron (NM_173799, intron 3 of 3)	11222	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
235598	chrX	47629701	47630400	+	0	NA	promoter-TSS (NM_001145252)	promoter-TSS (NM_001145252)	-120	NM_001145252	5199		NM_002621	ENSG00000126759	CFP	BFD|PFC|PFD|PROPERDIN	complement factor properdin	protein-coding
216666	chr8	22140471	22142730	+	0	NA	5' UTR (NM_001316965, exon 1 of 7)	5' UTR (NM_001316965, exon 1 of 7)	307	NM_001316964	80346		NM_025232	ENSG00000168476	REEP4	C8orf20|PP432|Yip2c	receptor accessory protein 4	protein-coding
45717	chr11	119090601	119090800	+	0	NA	intron (NM_000190, intron 8 of 13)	AluSx1|SINE|Alu	2713	NM_001024382	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
31781	chr10	98170271	98170830	+	0	NA	intron (NM_001256621, intron 3 of 7)	AluJr|SINE|Alu	35893	NM_001256619	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
35789	chr11	2182171	2182730	+	0	NA	Intergenic	Intergenic	9387	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
116160	chr19	17394021	17394300	+	0	NA	Intergenic	CpG	11470	NM_004335	684		NM_004335	ENSG00000130303	BST2	CD317|HM1.24|TETHERIN	bone marrow stromal cell antigen 2	protein-coding
113226	chr19	8476571	8477130	+	0	NA	intron (NM_031203, intron 13 of 16)	intron (NM_031203, intron 13 of 16)	25790	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
208480	chr7	67162921	67163730	+	0	NA	intron (NM_018264, intron 13 of 15)	intron (NM_018264, intron 13 of 15)	-48928	NR_039793	100616310		NR_039793	ENSG00000266525	MIR4650-1	-	microRNA 4650-1	ncRNA
62636	chr13	101267871	101268030	+	0	NA	intron (NM_001350750, intron 9 of 42)	MLT1J2|LTR|ERVL-MaLR	148558	NM_001350748	259232		NM_052867	ENSG00000102452	NALCN	CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding
148207	chr20	63565551	63566050	+	0	NA	exon (NM_001037335, exon 9 of 20)	exon (NM_001037335, exon 9 of 20)	1954	NM_033405	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
192543	chr6	25139651	25140280	+	0	NA	Intergenic	CpG	-1573	NR_027626	8418		NM_003570	ENSG00000293489	CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
54269	chr12	88143671	88144030	+	0	NA	intron (NM_001366583, intron 1 of 11)	MER41B|LTR|ERV1	1543	NM_181783	160418		NM_181783	ENSG00000139324	TMTC3	LIS8|SMILE	transmembrane O-mannosyltransferase targeting cadherins 3	protein-coding
86490	chr16	67015751	67016250	+	0	NA	Intergenic	AluSz6|SINE|Alu	-13149	NM_001755	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
233844	chrX	1505651	1506730	+	0	NA	intron (NM_178129, intron 1 of 1)	AluSx1|SINE|Alu	30995	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
57383	chr12	121809501	121809700	+	0	NA	intron (NM_001353345, intron 5 of 16)	intron (NM_001353345, intron 5 of 16)	5591	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
221025	chr8	116680271	116680530	+	0	NA	intron (NM_003756, intron 2 of 7)	SVA_E|Retroposon|SVA	28300	NR_136278	105375713		NR_136278	ENSG00000289382	LOC105375713	-	uncharacterized LOC105375713	ncRNA
78978	chr15	101644101	101644300	+	0	NA	intron (NM_025141, intron 4 of 4)	intron (NM_025141, intron 4 of 4)	8181	NM_078474	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
70280	chr14	101737721	101738280	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	7563	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
168641	chr3	150184151	150184530	+	0	NA	Intergenic	Intergenic	-54179	NR_110168	101927992		NR_110167	ENSG00000244541	LINC01213	-	long intergenic non-protein coding RNA 1213	ncRNA
29051	chr10	67837951	67838300	+	0	NA	promoter-TSS (NM_021800)	promoter-TSS (NM_021800)	54	NM_201262	56521		NM_021800	ENSG00000108176	DNAJC12	HPANBH4|JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
215065	chr7	152837671	152837830	+	0	NA	intron (NM_001040135, intron 9 of 9)	intron (NM_001040135, intron 9 of 9)	77998	NM_020445	57180		NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	actin related protein 3B	protein-coding
180386	chr5	7927721	7928030	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	58727	NR_157174	4552		NM_002454	ENSG00000124275	MTRR	MSR|cblE	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
214463	chr7	150356371	150356780	+	0	NA	Intergenic	AluJr4|SINE|Alu	-11521	NM_001362746	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
224646	chr9	20623301	20624150	+	0	NA	Intergenic	Intergenic	-1226	NM_004529	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
86465	chr16	66944551	66944650	+	0	NA	3' UTR (NM_001365408, exon 12 of 12)	3' UTR (NM_001365408, exon 12 of 12)	9084	NM_198061	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
211294	chr7	103274401	103274700	+	0	NA	non-coding (NR_003561, exon 5 of 21)	non-coding (NR_003561, exon 5 of 21)	5762	NR_003561	349152		NM_182634	ENSG00000291139	DPY19L2P2	-	DPY19L2 pseudogene 2	pseudo
186222	chr5	134386821	134387080	+	0	NA	intron (NM_003337, intron 4 of 5)	L1ME4a|LINE|L1	15381	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
194247	chr6	32473321	32474050	+	0	NA	Intergenic	Intergenic	33798	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
50471	chr12	47770771	47771130	+	0	NA	Intergenic	Intergenic	-2288	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
201410	chr6	146028121	146028480	+	0	NA	promoter-TSS (NM_001278067)	promoter-TSS (NM_001278067)	593	NM_001278065	2911		NM_000838	ENSG00000152822	GRM1	GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13	glutamate metabotropic receptor 1	protein-coding
124140	chr19	55694771	55694930	+	0	NA	exon (NM_001130071, exon 10 of 11)	exon (NM_001130071, exon 10 of 11)	18225	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
56025	chr12	110414551	110414850	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-10970	NM_001137664	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
31823	chr10	99430171	99431430	+	0	NA	promoter-TSS (NM_002079)	promoter-TSS (NM_002079)	-176	NM_002079	2805		NM_002079	ENSG00000120053	GOT1	AST|AST1|ASTQTL1|GIG18|SGOT|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1	protein-coding
82096	chr16	14438021	14438480	+	0	NA	intron (NM_002582, intron 23 of 23)	intron (NM_002582, intron 23 of 23)	-67984	NR_131191	105447648		NR_131191	ENSG00000260009	LINC02130	-	long intergenic non-protein coding RNA 2130	ncRNA
194323	chr6	32840471	32841350	+	0	NA	3' UTR (NM_004159, exon 6 of 6).7	3' UTR (NM_004159, exon 6 of 6).7	-2140	NM_018833	6891		NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
202693	chr6	158805921	158806480	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-11779	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
154709	chr22	36417151	36417450	+	0	NA	Intergenic	MIRc|SINE|MIR	-29333	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
31992	chr10	100878421	100878800	+	0	NA	Intergenic	Intergenic	-34353	NM_018121	55719		NM_018121	ENSG00000119906	SLF2	ATELS1|C10orf6|FAM178A	SMC5-SMC6 complex localization factor 2	protein-coding
159538	chr3	14467771	14468330	+	0	NA	intron (NR_103507, intron 8 of 13)	intron (NR_103507, intron 8 of 13)	65444	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
2109	chr1	8113151	8113850	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-87191	NM_018948	54206		NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
227972	chr9	95168021	95168430	+	0	NA	intron (NM_001243743, intron 6 of 14)	intron (NM_001243743, intron 6 of 14)	-82131	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA
73216	chr15	41584901	41586100	+	0	NA	Intergenic	CpG	25528	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
186197	chr5	134223421	134223800	+	0	NA	intron (NM_002715, intron 1 of 6)	intron (NM_002715, intron 1 of 6)	1944	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
141231	chr2	239569621	239569900	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	168012	NR_135577	101928111		NR_135575	ENSG00000222020	HDAC4-AS1	-	HDAC4 antisense RNA 1	ncRNA
83031	chr16	22308771	22308930	+	0	NA	intron (NR_047581, intron 4 of 20)	intron (NR_047581, intron 4 of 20)	11441	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
189738	chr5	176559801	176560300	+	0	NA	intron (NM_017675, intron 1 of 31)	MER74B|LTR|ERVL	10708	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
33426	chr10	118734621	118734930	+	0	NA	intron (NM_153810, intron 1 of 8)	intron (NM_153810, intron 1 of 8)	20195	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
206335	chr7	30318501	30318700	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-28710	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
60535	chr13	41455101	41455530	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-2235	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
93119	chr17	17696601	17697000	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	15342	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
184509	chr5	100898821	100899230	+	0	NA	intron (NM_175052, intron 1 of 2)	intron (NM_175052, intron 1 of 2)	4257	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
192270	chr6	20400821	20402790	+	0	NA	promoter-TSS (NM_001949)	promoter-TSS (NM_001949)	-74	NM_001949	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
122177	chr19	48907601	48908000	+	0	NA	intron (NM_006184, intron 4 of 12)	intron (NM_006184, intron 4 of 12)	7488	NM_006184	4924		NM_006184	ENSG00000104805	NUCB1	CALNUC|NUC	nucleobindin 1	protein-coding
119861	chr19	41438301	41438900	+	0	NA	intron (NM_018035, intron 1 of 5)	intron (NM_018035, intron 1 of 5)	937	NM_001320840	55101		NM_018035	ENSG00000105341	DMAC2	ATP5SL	distal membrane arm assembly component 2	protein-coding
194029	chr6	31832601	31832980	+	0	NA	Intergenic	Intergenic	-2126	NR_160952	50854		NM_016947	ENSG00000204387	SNHG32	C6orf48|D6S57|G8	small nucleolar RNA host gene 32	ncRNA
6956	chr1	31762151	31763070	+	0	NA	intron (NM_001294336, intron 1 of 31)	(CCACC)n|Simple_repeat|Simple_repeat	1730	NM_001294335	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
101434	chr17	67423621	67424130	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	46594	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
151230	chr21	45266121	45267280	+	0	NA	3' UTR (NM_015227, exon 8 of 8)	3' UTR (NM_015227, exon 8 of 8)	21195	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
63691	chr14	21091401	21091650	+	0	NA	exon (NM_001102454, exon 4 of 5)	exon (NM_001102454, exon 4 of 5)	7130	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
181060	chr5	36243651	36243750	+	0	NA	Intergenic	L2|LINE|L2	-1421	NM_153013	133686		NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
179754	chr5	254571	255030	+	0	NA	intron (NM_001330758, intron 12 of 12)	intron (NM_001330758, intron 12 of 12)	16724	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
238433	chrX	150982721	150983600	+	0	NA	promoter-TSS (NM_005342)	promoter-TSS (NM_005342)	-175	NM_001301229	3149		NM_005342	ENSG00000029993	HMGB3	HMG-2a|HMG-4|HMG2A|HMG4	high mobility group box 3	protein-coding
75958	chr15	70476401	70477080	+	0	NA	Intergenic	Intergenic	29188	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
117708	chr19	29211871	29213650	+	0	NA	intron (NM_006003, intron 1 of 1)	CpG	391	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
160158	chr3	20269571	20269730	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-72818	NR_110814	101927829		NR_110814	ENSG00000231304	LOC101927829	-	uncharacterized LOC101927829	ncRNA
179903	chr5	680471	680630	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	12802	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
205187	chr7	7670551	7670850	+	0	NA	intron (NM_002947, intron 4 of 7)	MLT1I-int|LTR|ERVL-MaLR	29948	NM_001302348	729852		NM_001302348	ENSG00000219545	UMAD1	RPA3-AS1|RPA3OS	UBAP1-MVB12-associated (UMA) domain containing 1	protein-coding
135189	chr2	158452521	158452980	+	0	NA	intron (NM_001301684, intron 1 of 11)	intron (NM_001301684, intron 1 of 11)	4003	NM_001301685	130940		NM_138803	ENSG00000153237	CCDC148	-	coiled-coil domain containing 148	protein-coding
210974	chr7	101803851	101804480	+	0	NA	Intergenic	Intergenic	-11842	NM_181500	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
5730	chr1	26413051	26413350	+	0	NA	intron (NM_024674, intron 2 of 3)	intron (NM_024674, intron 2 of 3)	2383	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
127079	chr2	37568521	37568850	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	102957	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
119605	chr19	40760351	40760850	+	0	NA	intron (NM_004596, intron 3 of 5)	intron (NM_004596, intron 3 of 5)	9397	NM_004596	6626		NM_004596	ENSG00000077312	SNRPA	Mud1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding
118394	chr19	35734621	35736130	+	0	NA	intron (NM_014727, intron 30 of 36)	L2|LINE|L2	7077	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
158314	chr22	50425401	50425600	+	0	NA	intron (NM_001351641, intron 10 of 23)	L1MB4|LINE|L1	18058	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
144630	chr20	35931901	35932300	+	0	NA	intron (NM_016436, intron 15 of 17)	AluSz|SINE|Alu	22402	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
157880	chr22	49723251	49723350	+	0	NA	Intergenic	AluJb|SINE|Alu	-65781	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
147881	chr20	62860901	62863030	+	0	NA	promoter-TSS (NM_001301726)	promoter-TSS (NM_001301726)	-143	NM_001301726	10732		NM_006602	ENSG00000101190	TCFL5	CHA|E2BP-1|Figlb|SOSF1|bHLHe82	transcription factor like 5	protein-coding
11300	chr1	89276521	89277100	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-3950	NM_052942	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
237722	chrX	125294251	125294800	+	0	NA	Intergenic	Intergenic	-25346	NM_001195272	100129520		NM_001195272	ENSG00000282815	TEX13C	-	TEX13 family member C	protein-coding
154631	chr22	36320951	36321350	+	0	NA	intron (NM_002473, intron 7 of 40)	AluSx1|SINE|Alu	-34243	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
179653	chr4	189466501	189466980	+	0	NA	Intergenic	Intergenic	-192866	NR_121679	101928971		NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
133829	chr2	127884901	127887300	+	0	NA	promoter-TSS (NM_001199140)	promoter-TSS (NM_001199140)	-144	NM_001199140	83607		NM_031445	ENSG00000144233	AMMECR1L	-	AMMECR1 like	protein-coding
203827	chr7	1418601	1419300	+	0	NA	Intergenic	Intergenic	40520	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
43444	chr11	77798551	77798850	+	0	NA	intron (NM_016578, intron 1 of 15)	L1PA7|LINE|L1	22134	NM_016578	51773		NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
220671	chr8	101156851	101157330	+	0	NA	Intergenic	Intergenic	13149	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
119955	chr19	41880171	41880530	+	0	NA	intron (NM_021601, intron 3 of 4)	AluJr|SINE|Alu	-2834	NM_198977	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
151384	chr21	45970571	45971200	+	0	NA	Intergenic	Intergenic	-2085	NR_109931	101928796		NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
182752	chr5	68283571	68283730	+	0	NA	intron (NM_181523, intron 7 of 15)	intron (NM_181523, intron 7 of 15)	-4869	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
187635	chr5	143004171	143004750	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-135550	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
216698	chr8	22186971	22187330	+	0	NA	intron (NR_033404, intron 8 of 15)	AluSz6|SINE|Alu	21778	NR_033403	649		NM_001199	ENSG00000168487	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
235566	chrX	47371021	47371100	+	0	NA	intron (NM_003446, intron 1 of 3)	AluSz|SINE|Alu	482	NM_003446	7712		NM_003446	ENSG00000147117	ZNF157	HZF22	zinc finger protein 157	protein-coding
45925	chr11	120934171	120934330	+	0	NA	intron (NM_001282473, intron 13 of 17)	intron (NM_001282473, intron 13 of 17)	23789	NR_133004	101929208		NR_133004		LOC101929208	-	uncharacterized LOC101929208	ncRNA
89607	chr16	89296871	89297030	+	0	NA	intron (NR_136339, intron 1 of 2)	intron (NR_136339, intron 1 of 2)	822	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
38289	chr11	43358301	43359900	+	0	NA	exon (NM_001376525, exon 1 of 25)	exon (NM_001376525, exon 1 of 25)	180	NR_164824	55761		NM_018259	ENSG00000052841	TTC17	-	tetratricopeptide repeat domain 17	protein-coding
145697	chr20	45017301	45017650	+	0	NA	intron (NM_006282, intron 9 of 10)	intron (NM_006282, intron 9 of 10)	50963	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
48217	chr12	8169851	8169950	+	0	NA	Intergenic	Intergenic	-2654	NM_001004328	440077		NM_001004328	ENSG00000196946	ZNF705A	-	zinc finger protein 705A	protein-coding
56360	chr12	113098051	113098730	+	0	NA	TTS (NM_001193521)	TTS (NM_001193521)	37209	NM_001301202	8437		NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
171525	chr3	196671971	196672330	+	0	NA	Intergenic	AluY|SINE|Alu	32456	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
150639	chr21	43401201	43401400	+	0	NA	Intergenic	Intergenic	25831	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
70466	chr14	102066771	102066930	+	0	NA	Intergenic	AluSz|SINE|Alu	20194	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
69926	chr14	99525071	99526100	+	0	NA	intron (NM_001144995, intron 2 of 5)	L2b|LINE|L2	44176	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
234342	chrX	15151521	15151850	+	0	NA	Intergenic	Intergenic	118398	NM_024087	140462		NM_024087	ENSG00000102048	ASB9	-	ankyrin repeat and SOCS box containing 9	protein-coding
110926	chr19	2784451	2784550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1003	NM_003249	7064		NM_003249	ENSG00000172009	THOP1	EP24.15|MEPD_HUMAN|MP78|TOP	thimet oligopeptidase 1	protein-coding
42619	chr11	72220721	72221230	+	0	NA	exon (NM_001113536, exon 3 of 5)	exon (NM_001113536, exon 3 of 5)	-3792	NM_001567	3636		NM_001567	ENSG00000165458	INPPL1	OPSMD|SHIP2	inositol polyphosphate phosphatase like 1	protein-coding
94878	chr17	31529371	31529530	+	0	NA	intron (NM_001346748, intron 11 of 12)	AluJo|SINE|Alu	-5433	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
32687	chr10	103968271	103968630	+	0	NA	intron (NM_014720, intron 1 of 18)	intron (NM_014720, intron 1 of 18)	1310	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
40904	chr11	65149221	65149950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-15066	NM_032431	84447		NM_032431	ENSG00000162298	SYVN1	DER3|HRD1	synoviolin 1	protein-coding
92054	chr17	7504051	7504350	+	0	NA	intron (NM_000937, intron 19 of 29)	intron (NM_000937, intron 19 of 29)	19834	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
224679	chr9	21160151	21160600	+	0	NA	Intergenic	L1MCb|LINE|L1	6285	NM_002175	3452		NM_002175	ENSG00000137080	IFNA21	IFN-alphaI|LeIF F|leIF-F	interferon alpha 21	protein-coding
56395	chr12	113204751	113205250	+	0	NA	intron (NM_001330452, intron 2 of 4)	L2c|LINE|L2	16094	NM_001330452	115811		NM_138451	ENSG00000166578	IQCD	4933433C09Rik|CFAP84|DRC10	IQ motif containing D	protein-coding
75241	chr15	64890871	64891030	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-20952	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
71249	chr14	105196201	105196770	+	0	NA	Intergenic	Intergenic	-15162	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
116313	chr19	17792451	17792750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2538	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
38938	chr11	47508501	47509050	+	0	NA	intron (NM_001376409, intron 1 of 15)	intron (NM_001376409, intron 1 of 15)	-14254	NM_198700	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
156393	chr22	41109201	41109650	+	0	NA	intron (NM_001362843, intron 1 of 29)	MIR|SINE|MIR	16833	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
187552	chr5	142778951	142779750	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	8123	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
100842	chr17	64124151	64124450	+	0	NA	intron (NM_001433, intron 1 of 21)	L1MB8|LINE|L1	5844	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
147387	chr20	58656201	58656400	+	0	NA	intron (NM_001134772, intron 1 of 7)	intron (NM_001134772, intron 1 of 7)	5017	NM_001204868	8675		NM_003763	ENSG00000124222	STX16	SYN-16|SYN16	syntaxin 16	protein-coding
60114	chr13	38348901	38350270	+	0	NA	promoter-TSS (NM_016617)	promoter-TSS (NM_016617)	-266	NM_001286705	51569		NM_016617	ENSG00000120686	UFM1	BM-002|C13orf20|HLD14	ubiquitin fold modifier 1	protein-coding
5312	chr1	25227121	25227380	+	0	NA	intron (NM_015484, intron 5 of 6)	AluSx1|SINE|Alu	5252	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
173439	chr4	8231471	8232600	+	0	NA	non-coding (NR_134639, exon 11 of 15)	non-coding (NR_134639, exon 11 of 15)	32745	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
92542	chr17	8947901	8948100	+	0	NA	intron (NM_001142633, intron 1 of 18)	AluY|SINE|Alu	17707	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
202288	chr6	157182071	157182230	+	0	NA	intron (NM_001371656, intron 13 of 20)	AluJr|SINE|Alu	141369	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
232522	chr9	136325351	136325650	+	0	NA	non-coding (NR_026964, exon 1 of 1)	non-coding (NR_026964, exon 1 of 1)	1823	NR_026964	26102		NR_026964	ENSG00000262075	DKFZP434A062	-	uncharacterized LOC26102	ncRNA
94171	chr17	28405451	28406400	+	0	NA	exon (NM_001242366, exon 1 of 4)	exon (NM_001242366, exon 1 of 4)	287	NM_001242366	113235		NM_080669	ENSG00000076351	SLC46A1	G21|HCP1|HsPCFT|PCFT|hPCFT	solute carrier family 46 member 1	protein-coding
203321	chr6	170161571	170161950	+	0	NA	intron (NR_125878, intron 1 of 2)	AluSc8|SINE|Alu	1118	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
82326	chr16	15731251	15731550	+	0	NA	intron (NM_022844, intron 27 of 41).2	MIRb|SINE|MIR	81155	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
91146	chr17	3756321	3756580	+	0	NA	intron (NM_002208, intron 10 of 30)	AluSx|SINE|Alu	32547	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
190021	chr5	177495471	177495830	+	0	NA	intron (NM_203352, intron 2 of 12)	intron (NM_203352, intron 2 of 12)	1954	NR_103804	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
88910	chr16	87810671	87811030	+	0	NA	Intergenic	AluSx|SINE|Alu	23810	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
49061	chr12	14407301	14407500	+	0	NA	intron (NM_181352, intron 1 of 14)	(TTTTT)n|Simple_repeat|Simple_repeat	22119	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
218718	chr8	58657601	58658030	+	0	NA	intron (NM_003580, intron 1 of 30)	intron (NM_003580, intron 1 of 30)	1592	NM_001144772	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
19136	chr1	171541351	171541800	+	0	NA	exon (NM_015172, exon 16 of 34)	exon (NM_015172, exon 16 of 34)	56045	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
166985	chr3	125766341	125767600	+	0	NA	Intergenic	CpG	-7744	NR_153417	105374312		NR_153417	ENSG00000272840	LOC105374312	-	uncharacterized LOC105374312	ncRNA
14827	chr1	146307411	146308460	+	0	NA	Intergenic	Intergenic	9944	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
26230	chr10	14590421	14590700	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	13841	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
188189	chr5	150625471	150625830	+	0	NA	intron (NM_001166209, intron 2 of 2)	intron (NM_001166209, intron 2 of 2)	8006	NM_001166209	11346		NM_007286	ENSG00000171992	SYNPO	SYNPO1	synaptopodin	protein-coding
44004	chr11	94638821	94639080	+	0	NA	intron (NR_135096, intron 4 of 6)	intron (NR_135096, intron 4 of 6)	71582	NM_152431	143689		NM_152431	ENSG00000134627	PIWIL4	HIWI2|MIWI2	piwi like RNA-mediated gene silencing 4	protein-coding
93317	chr17	18178601	18179530	+	0	NA	3' UTR (NM_016239, exon 65 of 65)	3' UTR (NM_016239, exon 65 of 65)	-4763	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
112508	chr19	6474771	6474930	+	0	NA	intron (NM_024898, intron 14 of 22)	AluSx|SINE|Alu	6937	NM_001290331	79958		NM_024898	ENSG00000205744	DENND1C	FAM31C	DENN domain containing 1C	protein-coding
81713	chr16	11254501	11255400	+	0	NA	exon (NM_003745, exon 2 of 2)	exon (NM_003745, exon 2 of 2)	1232	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
119367	chr19	40144201	40145700	+	0	NA	Intergenic	AluJb|SINE|Alu	-46476	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
149842	chr21	35041101	35041530	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-1889	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
125278	chr2	10458901	10459100	+	0	NA	Intergenic	Intergenic	9272	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
21142	chr1	203670951	203671330	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	43203	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
869	chr1	1624801	1625300	+	0	NA	exon (NM_001170686, exon 6 of 20)	exon (NM_001170686, exon 6 of 20)	-7123	NM_006983	8510		NM_006983	ENSG00000189409	MMP23B	MIFR|MIFR-1|MMP22|MMP23A	matrix metallopeptidase 23B	protein-coding
181119	chr5	37365401	37366230	+	0	NA	intron (NM_153485, intron 1 of 34)	L1MA2|LINE|L1	5291	NM_153485	9631		NM_004298	ENSG00000113569	NUP155	ATFB15|N155	nucleoporin 155	protein-coding
33648	chr10	119705421	119706000	+	0	NA	Intergenic	AluJo|SINE|Alu	-20337	NM_001243195	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
180501	chr5	14258771	14259000	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	115543	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
211788	chr7	107659651	107660030	+	0	NA	promoter-TSS (NM_000441)	promoter-TSS (NM_000441)	-988	NM_000441	5172		NM_000441	ENSG00000091137	SLC26A4	DFNB4|EVA|PDS|TDH2B	solute carrier family 26 member 4	protein-coding
22546	chr1	222473371	222473730	+	0	NA	Intergenic	Intergenic	74554	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
134943	chr2	151614621	151615200	+	0	NA	intron (NM_001164508, intron 76 of 181)	intron (NM_001164508, intron 76 of 181)	119566	NM_001271208	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
12210	chr1	100395471	100395830	+	0	NA	intron (NM_001319210, intron 4 of 16)	L2a|LINE|L2	43144	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
8154	chr1	39410501	39411400	+	0	NA	exon (NM_015038, exon 1 of 1)	exon (NM_015038, exon 1 of 1)	1877	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
37155	chr11	13667101	13667380	+	0	NA	Intergenic	Intergenic	-1428	NM_032228	84188		NM_032228	ENSG00000197601	FAR1	CSPSD|MLSTD2|PFCRD|SDR10E1	fatty acyl-CoA reductase 1	protein-coding
53342	chr12	64638301	64638500	+	0	NA	intron (NR_040718, intron 1 of 3)	AluY|SINE|Alu	-15795	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
196153	chr6	42451201	42454550	+	0	NA	promoter-TSS (NM_001297573)	promoter-TSS (NM_001297573)	-651	NM_033502	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
441	chr1	1117671	1117830	+	0	NA	Intergenic	AluJb|SINE|Alu	-1661	NM_001330306	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
136490	chr2	177227351	177227800	+	0	NA	Intergenic	Intergenic	14781	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
150701	chr21	43716871	43717650	+	0	NA	Intergenic	Intergenic	-1869	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
237895	chrX	131741071	131741400	+	0	NA	intron (NR_152876, intron 8 of 9)	intron (NR_152876, intron 8 of 9)	89408	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
213274	chr7	134667951	134668250	+	0	NA	intron (NM_001293085, intron 3 of 3)	intron (NM_001293085, intron 3 of 3)	21247	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
197743	chr6	87163171	87163580	+	0	NA	intron (NM_015021, intron 1 of 7)	AluY|SINE|Alu	7810	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
99822	chr17	54992951	54993370	+	0	NA	intron (NM_178509, intron 4 of 17)	intron (NM_178509, intron 4 of 17)	-24375	NM_001162862	1353		NM_004375	ENSG00000166260	COX11	COX11P|MC4DN23	cytochrome c oxidase copper chaperone COX11	protein-coding
216912	chr8	22701421	22702350	+	0	NA	Intergenic	Intergenic	-8405	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
102318	chr17	75372051	75372630	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	33338	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
142183	chr20	2884201	2884600	+	0	NA	intron (NM_001385311, intron 1 of 20)	L1MB7|LINE|L1	10919	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
36504	chr11	6406471	6406830	+	0	NA	promoter-TSS (NM_001257320)	promoter-TSS (NM_001257320)	-987	NM_001257320	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
136761	chr2	181371451	181371750	+	0	NA	intron (NR_130784, intron 4 of 4)	intron (NR_130784, intron 4 of 4)	-65948	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
99993	chr17	57747601	57747800	+	0	NA	Intergenic	Intergenic	-2401	NM_001282544	101927581		NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
20645	chr1	200037201	200037400	+	0	NA	intron (NM_003822, intron 1 of 6)	intron (NM_003822, intron 1 of 6)	-5525	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
140700	chr2	234296151	234296450	+	0	NA	Intergenic	LTR16B1|LTR|ERVL	158295	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
127046	chr2	37223921	37224180	+	0	NA	intron (NM_005760, intron 2 of 15)	intron (NM_005760, intron 2 of 15)	7546	NM_005760	10153		NM_005760	ENSG00000115816	CEBPZ	CBF|CBF2|HSP-CBF|NOC1	CCAAT enhancer binding protein zeta	protein-coding
47940	chr12	6830301	6830700	+	0	NA	exon (NM_014262, exon 3 of 15)	exon (NM_014262, exon 3 of 15)	2093	NM_014262	10536		NM_014262	ENSG00000110811	P3H3	GRCB|HSU47926|LEPREL2	prolyl 3-hydroxylase 3	protein-coding
17013	chr1	156022321	156022780	+	0	NA	Intergenic	L2b|LINE|L2	-1599	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
216283	chr8	12527351	12528330	+	0	NA	intron (NR_040091, intron 5 of 6)	AluSx1|SINE|Alu	90827	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
175151	chr4	55542701	55543100	+	0	NA	intron (NM_004898, intron 1 of 22)	intron (NM_004898, intron 1 of 22)	3032	NM_001267843	9575		NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding
157752	chr22	46673071	46673230	+	0	NA	intron (NM_001366660, intron 14 of 17)	intron (NM_001366660, intron 14 of 17)	52764	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
197644	chr6	84033651	84033750	+	0	NA	promoter-TSS (NM_001346542)	promoter-TSS (NM_001346542)	-72	NM_001346542	112609		NM_138409	ENSG00000135324	MRAP2	C6orf117|bA51G5.2	melanocortin 2 receptor accessory protein 2	protein-coding
189390	chr5	172723351	172723450	+	0	NA	Intergenic	AluSz|SINE|Alu	-32103	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
225937	chr9	40988421	40989180	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-3461	NR_156730	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
123405	chr19	53981171	53981330	+	0	NA	intron (NM_031895, intron 3 of 3)	intron (NM_031895, intron 3 of 3)	-1057	NR_030632	100126325		NR_030632	ENSG00000284583	MIR935	MIRN935|hsa-mir-935|mir-935	microRNA 935	ncRNA
2132	chr1	8331671	8331830	+	0	NA	intron (NM_001379616, intron 4 of 7)	intron (NM_001379616, intron 4 of 7)	13636	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
171847	chr4	705301	706650	+	0	NA	intron (NM_001317836, intron 1 of 11)	CpG	143	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
147014	chr20	53584121	53584650	+	0	NA	intron (NM_006526, intron 1 of 5)	intron (NM_006526, intron 1 of 5)	9454	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
152635	chr22	21500121	21500850	+	0	NA	intron (NR_003700, intron 1 of 16)	intron (NR_003700, intron 1 of 16)	17006	NR_003700	375133		NR_003700	ENSG00000293427	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
156142	chr22	40164271	40165050	+	0	NA	intron (NM_001024843, intron 4 of 23)	AluSp|SINE|Alu	-13265	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
52517	chr12	56078671	56081080	+	0	NA	promoter-TSS (NM_001982)	promoter-TSS (NM_001982)	-233	NM_001005915	2065		NM_001982	ENSG00000065361	ERBB3	ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|VSCN1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3	erb-b2 receptor tyrosine kinase 3	protein-coding
53708	chr12	68586101	68586300	+	0	NA	Intergenic	Intergenic	-24699	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
191675	chr6	13462551	13462850	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	9363	NR_038459	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
198478	chr6	106205071	106205230	+	0	NA	intron (NR_104402, intron 4 of 5)	intron (NR_104402, intron 4 of 5)	106209	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
87247	chr16	69761901	69763850	+	0	NA	intron (NM_001270455, intron 1 of 8)	intron (NM_001270455, intron 1 of 8)	543	NM_001270454	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
29826	chr10	72323271	72323450	+	0	NA	Intergenic	Intergenic	31559	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
24137	chr1	235837671	235838930	+	0	NA	intron (NM_001301365, intron 1 of 52)	L3|LINE|CR1	14760	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
106503	chr18	18930551	18930730	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2181173	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
182880	chr5	69915271	69915630	+	0	NA	intron (NR_029426, intron 5 of 9).2	intron (NR_029426, intron 5 of 9).2	-11430	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
59175	chr13	22009501	22009700	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-131440	NR_047040	100874182		NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
109700	chr19	1054751	1055450	+	0	NA	exon (NM_019112, exon 30 of 47)	exon (NM_019112, exon 30 of 47)	-10859	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
207594	chr7	44966101	44966750	+	0	NA	intron (NM_033054, intron 15 of 21)	intron (NM_033054, intron 15 of 21)	12590	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
234193	chrX	12844001	12844200	+	0	NA	Intergenic	Intergenic	-22972	NM_016562	51284		NM_016562	ENSG00000196664	TLR7	IMD74|SLEB17|TLR7-like	toll like receptor 7	protein-coding
116019	chr19	17157871	17158230	+	0	NA	intron (NM_004145, intron 7 of 39)	MER20|DNA|hAT-Charlie	-57307	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
156099	chr22	40073801	40074000	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSq|SINE|Alu	29083	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
79684	chr16	1257521	1258030	+	0	NA	intron (NM_012217, intron 3 of 4)	intron (NM_012217, intron 3 of 4)	1706	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
61772	chr13	74575351	74576030	+	0	NA	Intergenic	Intergenic	22847	NR_034025	338864		NR_034024	ENSG00000236678	LINC00347	-	long intergenic non-protein coding RNA 347	ncRNA
113077	chr19	8256851	8257150	+	0	NA	exon (NM_024552, exon 9 of 12)	exon (NM_024552, exon 9 of 12)	47630	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
30564	chr10	79823221	79823730	+	0	NA	intron (NR_120613, intron 1 of 6)	L1ME1|LINE|L1	-2427	NR_029407	642361		NR_029407	ENSG00000272447	LOC642361	-	uncharacterized LOC642361	ncRNA
28686	chr10	60768901	60769330	+	0	NA	Intergenic	Intergenic	-9216	NM_001170406	983		NM_001786	ENSG00000170312	CDK1	CDC2|CDC28A|P34CDC2	cyclin dependent kinase 1	protein-coding
48709	chr12	10669801	10670000	+	0	NA	intron (NM_018423, intron 1 of 10)	L1MA8|LINE|L1	4152	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
114625	chr19	12983121	12984280	+	0	NA	Intergenic	(GC)n|Simple_repeat|Simple_repeat	-11775	NM_002501	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
173876	chr4	24555751	24556050	+	0	NA	intron (NM_001358, intron 4 of 13)	intron (NM_001358, intron 4 of 13)	28654	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
63197	chr13	113788751	113788850	+	0	NA	intron (NM_001348663, intron 3 of 7)	intron (NM_001348663, intron 3 of 7)	-26810	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
233434	chr9	137613751	137614230	+	0	NA	intron (NM_001317968, intron 4 of 6)	intron (NM_001317968, intron 4 of 6)	4539	NR_122036	85026		NM_032937	ENSG00000203993	ARRDC1-AS1	C9orf37	ARRDC1 antisense RNA 1	ncRNA
158251	chr22	50306451	50306780	+	0	NA	intron (NM_001376879, intron 1 of 38)	intron (NM_001376879, intron 1 of 38)	1031	NM_001376886	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
78824	chr15	99706451	99708150	+	0	NA	intron (NM_001130927, intron 8 of 9)	intron (NM_001130927, intron 8 of 9)	26137	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
46328	chr11	125452551	125453000	+	0	NA	intron (NM_005103, intron 7 of 9)	intron (NM_005103, intron 7 of 9)	-42439	NR_164146	403312		NM_203452	ENSG00000255537	LOC403312	-	putative uncharacterized protein MGC39545	ncRNA
57344	chr12	121758301	121758700	+	0	NA	intron (NM_001080825, intron 5 of 11)	intron (NM_001080825, intron 5 of 11)	35188	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
174923	chr4	49115251	49115650	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	128808	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
7728	chr1	36123001	36123930	+	0	NA	intron (NM_001294347, intron 1 of 3)	intron (NM_001294347, intron 1 of 3)	1757	NM_005202	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
236256	chrX	65859321	65859580	+	0	NA	Intergenic	Intergenic	-159420	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
11471	chr1	90000751	90001400	+	0	NA	intron (NM_001320185, intron 2 of 11)	MER20|DNA|hAT-Charlie	5965	NM_001320185	284695		NM_181781	ENSG00000162664	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
15479	chr1	150366771	150367280	+	0	NA	intron (NM_015203, intron 1 of 10)	intron (NM_015203, intron 1 of 10)	2914	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
4340	chr1	20575271	20575580	+	0	NA	Intergenic	Intergenic	-13672	NM_001785	978		NM_001785	ENSG00000158825	CDA	CDD	cytidine deaminase	protein-coding
55064	chr12	96487721	96488180	+	0	NA	Intergenic	Intergenic	-1627	NM_001306084	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
148250	chr20	63650101	63650700	+	0	NA	intron (NR_075070, intron 1 of 4)	intron (NR_075070, intron 1 of 4)	2366	NM_001276310	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
85424	chr16	50334971	50335800	+	0	NA	intron (NM_013263, intron 6 of 16)	intron (NM_013263, intron 6 of 16)	33603	NM_001173984	29117		NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4|SMARCI1	bromodomain containing 7	protein-coding
14446	chr1	144405401	144406000	+	0	NA	Intergenic	L2c|LINE|L2	-6876	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
223245	chr8	143631471	143632030	+	0	NA	Intergenic	MER66B|LTR|ERV1	-4269	NM_001261843	9831		NM_014789	ENSG00000183309	ZNF623	-	zinc finger protein 623	protein-coding
160483	chr3	30611531	30612180	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	5254	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
59416	chr13	25301051	25302530	+	0	NA	exon (NM_014089, exon 1 of 16)	exon (NM_014089, exon 1 of 16)	165	NM_001008564	9818		NM_014089	ENSG00000139496	NUP58	NUP45|NUPL1|PRO2463	nucleoporin 58	protein-coding
83945	chr16	29125871	29126730	+	0	NA	Intergenic	Intergenic	51458	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
179115	chr4	168848071	168848250	+	0	NA	intron (NM_001367568, intron 1 of 11)	(CCCAC)n|Simple_repeat|Simple_repeat	16065	NM_001367570	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
111046	chr19	3100221	3100930	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	6213	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
157556	chr22	45723271	45723450	+	0	NA	intron (NM_013236, intron 6 of 11)	intron (NM_013236, intron 6 of 11)	-37164	NR_039919	100616253		NR_039919	ENSG00000264160	MIR4762	-	microRNA 4762	ncRNA
84164	chr16	29800971	29801330	+	0	NA	intron (NM_001256269, intron 9 of 14)	intron (NM_001256269, intron 9 of 14)	-4974	NM_001276275	4150		NM_002383	ENSG00000103495	MAZ	PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87	MYC associated zinc finger protein	protein-coding
189529	chr5	173884401	173885100	+	0	NA	Intergenic	Intergenic	-3599	NM_001308189	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
226833	chr9	77827451	77828300	+	0	NA	intron (NM_002072, intron 2 of 6)	intron (NM_002072, intron 2 of 6)	-179553	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
145679	chr20	44989301	44989900	+	0	NA	intron (NM_006282, intron 5 of 10)	L1MB7|LINE|L1	23088	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
98682	chr17	47872451	47872750	+	0	NA	Intergenic	Intergenic	-16903	NM_199262	80320		NM_199262	ENSG00000189120	SP6	AI1K|EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
71587	chr14	106509151	106509630	+	0	NA	Intergenic	Intergenic	26951	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
41886	chr11	67249651	67250250	+	0	NA	intron (NM_012308, intron 16 of 20)	intron (NM_012308, intron 16 of 20)	9936	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
89101	chr16	88487651	88488180	+	0	NA	intron (NM_153813, intron 2 of 9)	intron (NM_153813, intron 2 of 9)	18997	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
131827	chr2	98650801	98651200	+	0	NA	intron (NM_001160154, intron 5 of 12)	AluSx3|SINE|Alu	12473	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
224697	chr9	21362001	21362200	+	0	NA	Intergenic	Intergenic	5957	NM_006900	3447		NM_006900	ENSG00000233816	IFNA13	-	interferon alpha 13	protein-coding
42311	chr11	68466551	68466880	+	0	NA	intron (NM_001352362, intron 2 of 24)	AluY|SINE|Alu	5963	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
201829	chr6	150039571	150039930	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	-14218	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
76355	chr15	74543301	74544580	+	0	NA	exon (NM_001307939, exon 2 of 9)	exon (NM_001307939, exon 2 of 9)	2720	NM_006465	10620		NM_006465	ENSG00000179361	ARID3B	BDP|DRIL2	AT-rich interaction domain 3B	protein-coding
90394	chr17	1292251	1292550	+	0	NA	intron (NM_172367, intron 1 of 2)	L2b|LINE|L2	12738	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
194296	chr6	32741351	32741450	+	0	NA	promoter-TSS (NM_020056).3	promoter-TSS (NM_020056).3	9	NM_020056	3118		NM_020056	ENSG00000237541	HLA-DQA2	DC-alpha|DQA1|DX-ALPHA|HLA-DCA|HLA-DXA|HLADQA2	major histocompatibility complex, class II, DQ alpha 2	protein-coding
68095	chr14	75293371	75295290	+	0	NA	promoter-TSS (NR_038421)	promoter-TSS (NR_038421)	-74	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
89808	chr16	89542971	89543130	+	0	NA	intron (NM_003119, intron 9 of 16)	AluY|SINE|Alu	-17607	NM_001243131	6137		NM_000977	ENSG00000167526	RPL13	BBC1|D16S444E|D16S44E|L13|SEMDIST|eL13	ribosomal protein L13	protein-coding
64541	chr14	24456871	24457230	+	0	NA	intron (NR_110032, intron 2 of 2)	MLT1F1|LTR|ERVL-MaLR	14097	NR_110032	101927045		NR_110032		LOC101927045	-	uncharacterized LOC101927045	ncRNA
172088	chr4	1045951	1048050	+	0	NA	Intergenic	Intergenic	34536	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
61576	chr13	71867151	71867330	+	0	NA	promoter-TSS (NM_004392)	promoter-TSS (NM_004392)	-36	NM_001366712	1602		NM_004392	ENSG00000276644	DACH1	DACH	dachshund family transcription factor 1	protein-coding
88635	chr16	85633121	85633380	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	19928	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
44192	chr11	96265671	96266180	+	0	NA	intron (NM_032427, intron 1 of 4)	LTR1A2|LTR|ERV1	-75513	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
62172	chr13	97344471	97344830	+	0	NA	intron (NM_001382678, intron 4 of 5)	intron (NM_001382678, intron 4 of 5)	-89519	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
4938	chr1	23958471	23959400	+	0	NA	promoter-TSS (NM_017761)	promoter-TSS (NM_017761)	-893	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
38547	chr11	45913021	45913580	+	0	NA	intron (NM_057174, intron 9 of 10)	intron (NM_057174, intron 9 of 10)	4577	NM_057174	9409		NM_004813	ENSG00000121680	PEX16	PBD8A|PBD8B	peroxisomal biogenesis factor 16	protein-coding
153313	chr22	24242501	24243430	+	0	NA	intron (NM_001302464, intron 1 of 11)	intron (NM_001302464, intron 1 of 11)	2177	NM_001302465	2687		NM_004121	ENSG00000099998	GGT5	GGL|GGT 5|GGT-REL|GGTLA1	gamma-glutamyltransferase 5	protein-coding
113393	chr19	9205471	9205880	+	0	NA	Intergenic	LTR13|LTR|ERVK	9196	NM_001005191	125958		NM_001005191	ENSG00000174667	OR7D4	OR19-7|OR19-B|OR19B|OR7D4P|hg105	olfactory receptor family 7 subfamily D member 4	protein-coding
199009	chr6	111011601	111012000	+	0	NA	intron (NM_032194, intron 7 of 9)	intron (NM_032194, intron 7 of 9)	29762	NM_032194	84154		NM_032194	ENSG00000197498	RPF2	BXDC1|bA397G5.4	ribosome production factor 2 homolog	protein-coding
191941	chr6	15912251	15912350	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-216786	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
68060	chr14	75255151	75255330	+	0	NA	Intergenic	Intergenic	-23588	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
229685	chr9	124623151	124623450	+	0	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	-35136	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
31465	chr10	96375021	96375600	+	0	NA	intron (NM_012465, intron 18 of 20)	intron (NM_012465, intron 18 of 20)	-15945	NM_001284321	93377		NM_033207	ENSG00000197430	OPALIN	HTMP10|TMEM10|TMP10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding
87589	chr16	73064321	73064780	+	0	NA	Intergenic	Intergenic	-5529	NM_001164766	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
2562	chr1	9770371	9770530	+	0	NA	intron (NM_001302883, intron 2 of 17)	intron (NM_001302883, intron 2 of 17)	53515	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
216859	chr8	22617651	22618230	+	0	NA	intron (NM_021174, intron 16 of 20)	intron (NM_021174, intron 16 of 20)	12898	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
144937	chr20	37014651	37016400	+	0	NA	intron (NM_183404, intron 19 of 20)	AluY|SINE|Alu	-63817	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
72000	chr15	25855871	25856430	+	0	NA	intron (NM_024490, intron 1 of 20)	THE1D|LTR|ERVL-MaLR	7052	NM_024490	57194		NM_024490	ENSG00000206190	ATP10A	ATP10C|ATPVA|ATPVC	ATPase phospholipid transporting 10A (putative)	protein-coding
105986	chr18	5895751	5896050	+	0	NA	promoter-TSS (NM_001080209)	promoter-TSS (NM_001080209)	54	NM_001080209	645369		NM_001080209	ENSG00000206432	TMEM200C	TTMA	transmembrane protein 200C	protein-coding
86992	chr16	68229101	68230250	+	0	NA	TTS (NM_004555)	TTS (NM_004555)	3824	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
194268	chr6	32603901	32604950	+	0	NA	Intergenic	Intergenic	-14589	NM_001243965	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
113142	chr19	8332851	8333150	+	0	NA	intron (NM_198471, intron 7 of 10)	intron (NM_198471, intron 7 of 10)	10262	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
29447	chr10	70407271	70407430	+	0	NA	intron (NM_004096, intron 1 of 2)	SVA_D|Retroposon|SVA	3205	NM_004096	1979		NM_004096	ENSG00000148730	EIF4EBP2	4EBP2|PHASII	eukaryotic translation initiation factor 4E binding protein 2	protein-coding
131545	chr2	96745821	96746500	+	0	NA	Intergenic	AluJb|SINE|Alu	-6068	NM_001322352	81562		NM_030805	ENSG00000114988	LMAN2L	MRD69|MRT52|VIPL	lectin, mannose binding 2 like	protein-coding
86823	chr16	67881621	67882250	+	0	NA	intron (NM_014329, intron 22 of 28)	intron (NM_014329, intron 22 of 28)	-2950	NM_001348682	123904		NM_198443	ENSG00000188038	NRN1L	MRCC2446|UNQ2446|cpg15-2	neuritin 1 like	protein-coding
67007	chr14	67467551	67468530	+	0	NA	Intergenic	AluSx|SINE|Alu	20681	NM_001348542	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
50300	chr12	46399421	46400080	+	0	NA	intron (NR_125381, intron 2 of 2)	L1PA5|LINE|L1	15643	NR_125381	100288798		NR_125377		SLC38A4-AS1	-	SLC38A4 antisense RNA 1	ncRNA
31490	chr10	96644151	96644250	+	0	NA	intron (NM_152309, intron 8 of 16)	MER20B|DNA|hAT-Charlie	-57188	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
77203	chr15	80955821	80956150	+	0	NA	intron (NR_126328, intron 1 of 2)	intron (NR_126328, intron 1 of 2)	33834	NR_126327	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
159729	chr3	15799501	15800280	+	0	NA	intron (NM_015199, intron 1 of 27)	intron (NM_015199, intron 1 of 27)	-1706	NR_146111	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
76406	chr15	74712851	74713030	+	0	NA	Intergenic	AluSg7|SINE|Alu	12588	NM_001319217	1543		NM_000499	ENSG00000140465	CYP1A1	AHH|AHRR|CP11|CYP1|CYPIA1|P1-450|P450-C|P450DX	cytochrome P450 family 1 subfamily A member 1	protein-coding
187756	chr5	144187601	144188400	+	0	NA	intron (NM_020768, intron 2 of 3)	AmnSINE1|SINE|5S-Deu-L2	17127	NM_020768	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
229418	chr9	121299171	121299980	+	0	NA	promoter-TSS (NM_001353077)	promoter-TSS (NM_001353077)	-85	NM_001353077	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
43483	chr11	78291521	78292430	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	49905	NM_012296	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
199303	chr6	112037721	112038300	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-16094	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
92746	chr17	14339721	14340350	+	0	NA	intron (NM_006041, intron 1 of 1)	intron (NM_006041, intron 1 of 1)	36295	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
63029	chr13	112896501	112896700	+	0	NA	Intergenic	Intergenic	72038	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
153019	chr22	23224321	23224900	+	0	NA	intron (NM_021574, intron 1 of 21)	AluSz|SINE|Alu	-38157	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
113099	chr19	8283401	8283680	+	0	NA	Intergenic	AluSz|SINE|Alu	24818	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
22308	chr1	213110801	213111000	+	0	NA	intron (NM_001349663, intron 4 of 9)	L1M4a2|LINE|L1	59659	NM_012424	26750		NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
232726	chr9	136617221	136618200	+	0	NA	promoter-TSS (NR_135288)	promoter-TSS (NR_135288)	-529	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
104173	chr17	80417921	80418380	+	0	NA	intron (NR_148042, intron 2 of 7)	MIR|SINE|MIR	-1268	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
156077	chr22	40043771	40045750	+	0	NA	promoter-TSS (NM_001024843)	promoter-TSS (NM_001024843)	-57	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
46964	chr11	134712351	134712450	+	0	NA	Intergenic	Intergenic	-23545	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
137574	chr2	197260421	197260880	+	0	NA	intron (NR_046837, intron 5 of 5)	L1PA4|LINE|L1	41869	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
163741	chr3	52352051	52352350	+	0	NA	intron (NM_015512, intron 17 of 77)	intron (NM_015512, intron 17 of 77)	35881	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
186146	chr5	134165271	134166900	+	0	NA	intron (NM_170679, intron 3 of 5)	AluSx1|SINE|Alu	10865	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
18459	chr1	161549571	161550330	+	0	NA	promoter-TSS (NM_000569)	promoter-TSS (NM_000569)	-132	NM_000569	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
107875	chr18	55586101	55586300	+	0	NA	promoter-TSS (NM_001348218)	promoter-TSS (NM_001348218)	-78	NM_001369580	6925		NM_003199	ENSG00000196628	TCF4	CDG2T|E2-2|FCD2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
133410	chr2	118848821	118849280	+	0	NA	Intergenic	CpG	-1402	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
86781	chr16	67779551	67779850	+	0	NA	intron (NM_001320238, intron 1 of 12)	intron (NM_001320238, intron 1 of 12)	26860	NM_020850	57610		NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
206470	chr7	32998271	32998900	+	0	NA	intron (NM_001284341, intron 8 of 10)	intron (NM_001284341, intron 8 of 10)	19111	NM_001284343	11328		NM_007270	ENSG00000122642	FKBP9	FKBP60|FKBP63|PPIase	FKBP prolyl isomerase 9	protein-coding
107340	chr18	45785071	45785500	+	0	NA	Intergenic	L3|LINE|CR1	-40390	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
222976	chr8	143209951	143210330	+	0	NA	Intergenic	Intergenic	-3078	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
213992	chr7	142854701	142855750	+	0	NA	5' UTR (NM_001280794, exon 1 of 19)	5' UTR (NM_001280794, exon 1 of 19)	149	NM_004445	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
22742	chr1	224352021	224352650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4544	NR_102347	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
227788	chr9	93131001	93131750	+	0	NA	intron (NM_004148, intron 1 of 3)	intron (NM_004148, intron 1 of 3)	2876	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
49303	chr12	21452571	21452730	+	0	NA	intron (NM_001350912, intron 5 of 11)	intron (NM_001350912, intron 5 of 11)	14735	NM_001350912	79912		NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
1375	chr1	2525901	2527130	+	0	NA	promoter-TSS (NM_018216).2	promoter-TSS (NM_018216).2	81	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
95005	chr17	32372321	32372780	+	0	NA	3' UTR (NM_001098507, exon 12 of 12)	3' UTR (NM_001098507, exon 12 of 12)	22393	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
82113	chr16	14636051	14636150	+	0	NA	intron (NM_016561, intron 1 of 7)	intron (NM_016561, intron 1 of 7)	3149	NM_016561	51283		NM_016561	ENSG00000103429	BFAR	BAR|RNF47	bifunctional apoptosis regulator	protein-coding
101844	chr17	73998601	73998880	+	0	NA	Intergenic	Intergenic	-170203	NR_027146	283982		NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
238843	chrX	154467501	154467850	+	0	NA	exon (NM_017514, exon 20 of 33)	exon (NM_017514, exon 20 of 33)	9394	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
198795	chr6	108966971	108967430	+	0	NA	intron (NM_001286609, intron 16 of 16)	intron (NM_001286609, intron 16 of 16)	41788	NM_001199934	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
122924	chr19	50663551	50663850	+	0	NA	intron (NM_016148, intron 23 of 23)	L2a|LINE|L2	14255	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
156226	chr22	40347811	40348430	+	0	NA	intron (NM_000026, intron 1 of 12)	intron (NM_000026, intron 1 of 12)	1620	NR_134256	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
141423	chr2	240985671	240986230	+	0	NA	intron (NM_001351305, intron 28 of 31)	intron (NM_001351305, intron 28 of 31)	-12668	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
125713	chr2	20449371	20450080	+	0	NA	TTS (NM_004040)	TTS (NM_004040)	2651	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
68473	chr14	87959751	87961100	+	0	NA	intron (NM_001201401, intron 9 of 15)	L1MA6|LINE|L1	32757	NM_000153	2581		NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
68325	chr14	77565151	77565530	+	0	NA	intron (NM_004863, intron 5 of 11)	L1MC4a|LINE|L1	51297	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
211972	chr7	112798471	112799600	+	0	NA	Intergenic	MER49|LTR|ERV1	-8642	NM_001287497	64418		NM_022484	ENSG00000146802	TMEM168	-	transmembrane protein 168	protein-coding
90024	chr16	89896701	89896900	+	0	NA	intron (NM_014972, intron 9 of 17)	AluSc8|SINE|Alu	-22062	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
120195	chr19	42277801	42278250	+	0	NA	intron (NM_001379480, intron 2 of 20)	intron (NM_001379480, intron 2 of 20)	-6444	NM_001379484	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
112621	chr19	6764521	6765180	+	0	NA	intron (NM_005490, intron 1 of 9)	AluJr|SINE|Alu	2585	NM_005490	10045		NM_005490	ENSG00000125731	SH2D3A	NSP1	SH2 domain containing 3A	protein-coding
218273	chr8	42269601	42269830	+	0	NA	intron (NR_125823, intron 1 of 2)	intron (NR_125823, intron 1 of 2)	1246	NR_125823	101929897		NR_125823	ENSG00000253408	IKBKB-DT	ALAL-1|IKBKBAS	IKBKB divergent transcript	ncRNA
121708	chr19	47597921	47598180	+	0	NA	Intergenic	AluSc|SINE|Alu	-10146	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
238221	chrX	139932701	139933830	+	0	NA	promoter-TSS (NM_001353812)	promoter-TSS (NM_001353812)	-212	NM_001353812	286410		NM_173694	ENSG00000101974	ATP11C	ATPIG|ATPIQ|HACXL	ATPase phospholipid transporting 11C	protein-coding
45209	chr11	117826001	117826200	+	0	NA	intron (NM_001204268, intron 6 of 10)	MIRb|SINE|MIR	-1356	NM_001680	486		NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
104720	chr17	81598351	81598450	+	0	NA	intron (NM_001369698, intron 9 of 16)	L2a|LINE|L2	-20967	NR_130139	55666		NM_017921	ENSG00000182446	NPLOC4	NPL4	NPL4 homolog, ubiquitin recognition factor	protein-coding
17196	chr1	156246821	156247480	+	0	NA	intron (NM_001272108, intron 1 of 5)	intron (NM_001272108, intron 1 of 5)	906	NM_001272104	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
41201	chr11	65650121	65651150	+	0	NA	exon (NM_006747, exon 16 of 16)	exon (NM_006747, exon 16 of 16)	1443	NR_039709	100616284		NR_039709	ENSG00000265874	MIR4489	mir-4489	microRNA 4489	ncRNA
1327	chr1	2418351	2418450	+	0	NA	Intergenic	Intergenic	-4573	NM_001374427	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
149432	chr21	31382121	31382400	+	0	NA	intron (NM_001353690, intron 1 of 27)	intron (NM_001353690, intron 1 of 27)	-37906	NM_001353687	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
222588	chr8	140838801	140839480	+	0	NA	intron (NM_001352742, intron 4 of 31)	intron (NM_001352742, intron 4 of 31)	-106487	NR_029892	442893		NR_029892	ENSG00000254324	MIR151A	MIR151|MIRN151|hsa-mir-151|hsa-mir-151a	microRNA 151a	ncRNA
150382	chr21	42279321	42279880	+	0	NA	intron (NM_207628, intron 7 of 16)	intron (NM_207628, intron 7 of 16)	35809	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
171868	chr4	759121	759380	+	0	NA	intron (NM_001317836, intron 9 of 11)	CpG	22598	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
145646	chr20	44895871	44896030	+	0	NA	intron (NM_003404, intron 2 of 6)	L2b|LINE|L2	10245	NM_003404	7529		NM_003404	ENSG00000166913	YWHAB	GW128|HEL-S-1|HS1|KCIP-1|YWHAA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta	protein-coding
80356	chr16	2509921	2510380	+	0	NA	Intergenic	Intergenic	-3576	NM_001198569	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
195016	chr6	35465101	35465500	+	0	NA	intron (NM_021922, intron 9 of 9)	AluSx|SINE|Alu	-3101	NM_007104	4736		NM_007104	ENSG00000198755	RPL10A	CSA19|Csa-19|L10A|NEDD6|uL1	ribosomal protein L10a	protein-coding
132673	chr2	108779521	108779780	+	0	NA	intron (NM_006267, intron 25 of 28)	intron (NM_006267, intron 25 of 28)	-7100	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
180628	chr5	16663521	16663780	+	0	NA	3' UTR (NM_012334, exon 41 of 41)	3' UTR (NM_012334, exon 41 of 41)	-46592	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
143161	chr20	24051301	24051500	+	0	NA	Intergenic	Intergenic	-62621	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
178401	chr4	147646401	147646680	+	0	NA	intron (NM_001350141, intron 8 of 10)	AluJb|SINE|Alu	29143	NM_018241	55751		NM_018241	ENSG00000164168	TMEM184C	SLC51C3|TMEM34	transmembrane protein 184C	protein-coding
111079	chr19	3172621	3174250	+	0	NA	Intergenic	Intergenic	-5334	NM_003775	8698		NM_003775	ENSG00000125910	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
81504	chr16	8956501	8956700	+	0	NA	promoter-TSS (NM_001321858)	promoter-TSS (NM_001321858)	-220	NM_001321858	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
145990	chr20	46369771	46370130	+	0	NA	intron (NM_182764, intron 19 of 20)	L1MC5|LINE|L1	-5492	NM_001281458	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
210127	chr7	98204671	98204830	+	0	NA	intron (NM_014916, intron 13 of 13)	intron (NM_014916, intron 13 of 13)	-6689	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
196615	chr6	44252151	44252890	+	0	NA	intron (NM_001371238, intron 10 of 11)	AluYj4|SINE|Alu	1765	NR_039790	100616124		NR_039790	ENSG00000284427	MIR4647	mir-4647	microRNA 4647	ncRNA
94924	chr17	31938471	31938700	+	0	NA	intron (NM_015355, intron 1 of 15)	intron (NM_015355, intron 1 of 15)	1578	NM_015355	23512		NM_015355	ENSG00000178691	SUZ12	CHET9|IMMAS|JJAZ1	SUZ12 polycomb repressive complex 2 subunit	protein-coding
66854	chr14	64975871	64976250	+	0	NA	intron (NM_001202559, intron 3 of 13)	intron (NM_001202559, intron 3 of 13)	-3724	NM_001330182	376267		NM_198686	ENSG00000139998	RAB15	-	RAB15, member RAS oncogene family	protein-coding
142458	chr20	4021121	4021400	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5702	NM_001134337	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
125614	chr2	18926701	18926900	+	0	NA	Intergenic	MER119|DNA|hAT-Charlie	100171	NR_135287	400945		NR_135287	ENSG00000236204	LINC01376	-	long intergenic non-protein coding RNA 1376	ncRNA
46098	chr11	122856651	122857430	+	0	NA	intron (NM_019604, intron 5 of 9)	intron (NM_019604, intron 5 of 9)	-5291	NM_001304782	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
24631	chr1	246602071	246602530	+	0	NA	intron (NM_001139459, intron 2 of 8)	MLT1F2|LTR|ERVL-MaLR	35844	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
146045	chr20	47354821	47355330	+	0	NA	TTS (NR_134501)	TTS (NR_134501)	1361	NM_001363714	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
220945	chr8	108907301	108907510	+	0	NA	Intergenic	L2a|LINE|L2	-119811	NM_153015	157753		NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
237526	chrX	120306451	120306830	+	0	NA	intron (NM_001104544, intron 1 of 8)	intron (NM_001104544, intron 1 of 8)	4821	NM_001104544	55026		NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
128890	chr2	64129201	64129400	+	0	NA	intron (NM_020651, intron 1 of 6)	intron (NM_020651, intron 1 of 6)	15120	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
132774	chr2	109855621	109856080	+	0	NA	intron (NM_001164463, intron 22 of 22).3	(T)n|Simple_repeat|Simple_repeat	-42582	NR_027145	100271835		NR_027144	ENSG00000284337	LIMS3-LOC440895	-	LIMS3-LOC440895 readthrough	ncRNA
3654	chr1	16403271	16404180	+	0	NA	intron (NM_001353349, intron 8 of 10)	intron (NM_001353349, intron 8 of 10)	33699	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
163412	chr3	50549051	50549350	+	0	NA	Intergenic	Intergenic	18547	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
47442	chr12	3655571	3655750	+	0	NA	intron (NM_032680, intron 9 of 10)	intron (NM_032680, intron 9 of 10)	97449	NM_032680	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
19672	chr1	180881971	180882130	+	0	NA	intron (NR_137330, intron 12 of 12)	intron (NR_137330, intron 12 of 12)	-30847	NM_020950	57710		NM_020950	ENSG00000135835	KIAA1614	-	KIAA1614	protein-coding
173849	chr4	22237971	22238130	+	0	NA	Intergenic	Intergenic	101616	NR_037877	100505912		NR_037877		LOC100505912	-	uncharacterized LOC100505912	ncRNA
155991	chr22	39919971	39921750	+	0	NA	intron (NM_004810, intron 1 of 7)	intron (NM_004810, intron 1 of 7)	-5744	NM_001291824	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
115911	chr19	16605601	16606000	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	22404	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
182556	chr5	65866851	65867530	+	0	NA	Intergenic	MIRc|SINE|MIR	-59364	NM_001006600	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
100432	chr17	60766771	60766950	+	0	NA	intron (NM_001353144, intron 6 of 25)	L1PA6|LINE|L1	89009	NM_001330414	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
235762	chrX	49029771	49029930	+	0	NA	3' UTR (NM_006521, exon 10 of 10)	3' UTR (NM_006521, exon 10 of 10)	13507	NM_006521	7030		NM_006521	ENSG00000068323	TFE3	MRXSPF|RCCP2|RCCX1|TFEA|bHLHe33	transcription factor binding to IGHM enhancer 3	protein-coding
196488	chr6	43628471	43629700	+	0	NA	promoter-TSS (NM_001003690)	promoter-TSS (NM_001003690)	179	NM_019096	54676		NM_019096	ENSG00000172432	GTPBP2	JABELS	GTP binding protein 2	protein-coding
105578	chr18	136421	136830	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-21932	NM_001037334	9097		NM_005151	ENSG00000101557	USP14	TGT|Ubp6	ubiquitin specific peptidase 14	protein-coding
153160	chr22	23784301	23785030	+	0	NA	TTS (NM_005940)	TTS (NM_005940)	-2301	NM_003073	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
131321	chr2	96128751	96129050	+	0	NA	intron (NM_001002036, intron 8 of 8)	AluSz|SINE|Alu	9536	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
125136	chr2	9948721	9948980	+	0	NA	Intergenic	L2c|LINE|L2	-2843	NM_198182	29841		NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
109757	chr19	1118501	1118700	+	0	NA	intron (NM_001100122, intron 11 of 28).2	AluSx1|SINE|Alu	13621	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
198822	chr6	109073201	109073660	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	21416	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
36713	chr11	9003251	9004930	+	0	NA	promoter-TSS (NM_020645)	promoter-TSS (NM_020645)	-89	NM_020645	56675		NM_020645	ENSG00000175352	NRIP3	C11orf14|NY-SAR-105	nuclear receptor interacting protein 3	protein-coding
225630	chr9	36324001	36324280	+	0	NA	Intergenic	MIRb|SINE|MIR	-47162	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
94677	chr17	30476871	30478100	+	0	NA	promoter-TSS (NM_001007025)	promoter-TSS (NM_001007025)	77	NM_001007024	9527		NM_004871	ENSG00000108587	GOSR1	GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28	golgi SNAP receptor complex member 1	protein-coding
32888	chr10	110153351	110153680	+	0	NA	Intergenic	L2b|LINE|L2	-1535	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
171437	chr3	196278651	196278750	+	0	NA	intron (NM_001312673, intron 1 of 8)	AluSz|SINE|Alu	9026	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
119348	chr19	39978521	39978980	+	0	NA	intron (NM_006503, intron 6 of 10)	AluJr|SINE|Alu	7585	NM_006503	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
213485	chr7	139047151	139047480	+	0	NA	3' UTR (NM_001363491, exon 13 of 13)	3' UTR (NM_001363491, exon 13 of 13)	-3158	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
88412	chr16	84672301	84672880	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	24079	NM_024731	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
3911	chr1	17312371	17312530	+	0	NA	intron (NM_012387, intron 1 of 15)	AluSq2|SINE|Alu	4253	NM_012387	23569		NM_012387	ENSG00000159339	PADI4	PAD|PAD4|PADI5|PDI4|PDI5	peptidyl arginine deiminase 4	protein-coding
164594	chr3	66219271	66219630	+	0	NA	intron (NM_173471, intron 1 of 10)	MLT1E1A|LTR|ERVL-MaLR	-1292	NM_001350993	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
127097	chr2	37619471	37619630	+	0	NA	Intergenic	Intergenic	52092	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
111373	chr19	3704921	3705430	+	0	NA	Intergenic	AluSz|SINE|Alu	-3209	NM_001267560	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
319	chr1	980571	980730	+	0	NA	exon (NM_001291367, exon 3 of 5)	exon (NM_001291367, exon 3 of 5)	523	NM_001369898	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
13006	chr1	111186001	111186330	+	0	NA	3' UTR (NM_024901, exon 12 of 12)	3' UTR (NM_024901, exon 12 of 12)	14481	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
152756	chr22	21741071	21741430	+	0	NA	Intergenic	MER77B|LTR|ERVL	-5456	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
73524	chr15	43798751	43799450	+	0	NA	exon (NM_001258031, exon 3 of 12)	exon (NM_001258031, exon 3 of 12)	997	NM_001258031	619189		NM_001258031	ENSG00000184716	SERINC4	-	serine incorporator 4	protein-coding
77726	chr15	85708521	85708800	+	0	NA	intron (NM_001270546, intron 10 of 28)	intron (NM_001270546, intron 10 of 28)	50065	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
4404	chr1	21175151	21175600	+	0	NA	intron (NM_001198801, intron 2 of 34)	intron (NM_001198801, intron 2 of 34)	1522	NM_001198801	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
34598	chr10	133263521	133263800	+	0	NA	intron (NM_001164490, intron 19 of 19)	intron (NM_001164490, intron 19 of 19)	13208	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
15600	chr1	150601801	150602730	+	0	NA	Intergenic	AluJb|SINE|Alu	-22527	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
222949	chr8	143130951	143131480	+	0	NA	Intergenic	Intergenic	28789	NM_002347	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
32181	chr10	101575571	101576330	+	0	NA	Intergenic	Intergenic	12307	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
75812	chr15	69114121	69114730	+	0	NA	Intergenic	Intergenic	33575	NR_026949	283673		NM_173610	ENSG00000212766	EWSAT1	LINC00277|NCRNA00277|TMEM84	Ewing sarcoma associated transcript 1	ncRNA
210292	chr7	99435621	99436280	+	0	NA	intron (NM_001198879, intron 2 of 8)	AluSx3|SINE|Alu	2848	NM_015545	26024		NM_015545	ENSG00000106246	PTCD1	-	pentatricopeptide repeat domain 1	protein-coding
26954	chr10	26579371	26579750	+	0	NA	promoter-TSS (NR_134472)	promoter-TSS (NR_134472)	-253	NR_134472	101929117		NR_134472		LINC03028	-	long intergenic non-protein coding RNA 3028	ncRNA
213618	chr7	139495201	139495600	+	0	NA	Intergenic	Intergenic	-11727	NM_198508	346689		NM_198508	ENSG00000188883	KLRG2	CLEC15B	killer cell lectin like receptor G2	protein-coding
79643	chr16	1181001	1181230	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	27874	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
217025	chr8	23227351	23227850	+	0	NA	intron (NR_033928, intron 1 of 2)	AluSx|SINE|Alu	2379	NR_033928	389641		NR_033928	ENSG00000246582	TNFRSF10A-DT	PLACT1	TNFRSF10A divergent transcript	ncRNA
97933	chr17	45160771	45162580	+	0	NA	promoter-TSS (NM_001303444)	promoter-TSS (NM_001303444)	-170	NM_001303441	124790		NM_144608	ENSG00000168517	HEXIM2	L3	HEXIM P-TEFb complex subunit 2	protein-coding
140757	chr2	234494171	234495830	+	0	NA	3' UTR (NM_005737, exon 1 of 1)	3' UTR (NM_005737, exon 1 of 1)	2049	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
14628	chr1	145461671	145461830	+	0	NA	Intergenic	MER39|LTR|ERV1	-55972	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
168975	chr3	152397071	152397600	+	0	NA	intron (NM_001314057, intron 3 of 11)	L1PA7|LINE|L1	-56345	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
186179	chr5	134206601	134206800	+	0	NA	intron (NM_002715, intron 1 of 6)	AluJr|SINE|Alu	18854	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
55998	chr12	110298671	110299030	+	0	NA	intron (NM_170665, intron 5 of 19)	L1MC4|LINE|L1	17603	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
80891	chr16	3715971	3716130	+	0	NA	intron (NM_016292, intron 1 of 17)	AluSg|SINE|Alu	1474	NM_001272049	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
80405	chr16	2599101	2599500	+	0	NA	3' UTR (NM_001261816, exon 12 of 12)	3' UTR (NM_001261816, exon 12 of 12)	-4084	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
183117	chr5	74684721	74686900	+	0	NA	intron (NM_000521, intron 1 of 13)	intron (NM_000521, intron 1 of 13)	577	NM_000521	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
122199	chr19	48954301	48955550	+	0	NA	promoter-TSS (NM_004324)	promoter-TSS (NM_004324)	50	NM_138761	581		NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
21218	chr1	204104401	204105400	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	31785	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
4094	chr1	19207021	19207530	+	0	NA	intron (NM_020765, intron 1 of 105)	intron (NM_020765, intron 1 of 105)	2991	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
126203	chr2	26783071	26783450	+	0	NA	Intergenic	Intergenic	-2755	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
17358	chr1	156504321	156505780	+	0	NA	Intergenic	Intergenic	-4275	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
65453	chr14	51744301	51744880	+	0	NA	Intergenic	SATR2|Satellite|Satellite	27307	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
80198	chr16	2145021	2146100	+	0	NA	Intergenic	Intergenic	-2584	NM_001308053	25837		NM_014353	ENSG00000167964	RAB26	V46133	RAB26, member RAS oncogene family	protein-coding
33847	chr10	124230701	124232320	+	0	NA	Intergenic	Intergenic	-137912	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
56870	chr12	120286751	120287300	+	0	NA	Intergenic	MIR|SINE|MIR	-4755	NM_001385735	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
19225	chr1	172545451	172546150	+	0	NA	intron (NM_001282751, intron 1 of 21)	MIR|SINE|MIR	12650	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
108041	chr18	59142321	59143300	+	0	NA	intron (NM_033280, intron 1 of 5)	intron (NM_033280, intron 1 of 5)	2926	NM_033280	90701		NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
122042	chr19	48641951	48642930	+	0	NA	intron (NR_136241, intron 3 of 8)	AluSx1|SINE|Alu	3747	NM_001217	770		NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
218540	chr8	53945201	53945400	+	0	NA	intron (NM_170587, intron 3 of 5)	L1MB7|LINE|L1	64428	NR_104578	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
227294	chr9	89407521	89407900	+	0	NA	intron (NM_001371201, intron 2 of 18)	L2|LINE|L2	72180	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
94368	chr17	28917471	28917630	+	0	NA	intron (NM_020889, intron 6 of 8)	intron (NM_020889, intron 6 of 8)	-8725	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
63399	chr13	114071771	114072300	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	5920	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171896	chr4	794801	795700	+	0	NA	intron (NM_006651, intron 2 of 3)	CpG	-13402	NR_036512	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
20260	chr1	193593471	193593630	+	0	NA	Intergenic	Intergenic	288805	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
195537	chr6	37356671	37356830	+	0	NA	intron (NM_183078, intron 1 of 6)	intron (NM_183078, intron 1 of 6)	2767	NR_046399	9025		NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
135458	chr2	161247171	161247530	+	0	NA	non-coding (NR_110163, exon 3 of 3)	non-coding (NR_110163, exon 3 of 3)	2611	NR_110163	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
95035	chr17	32493221	32493830	+	0	NA	3' UTR (NM_015194, exon 22 of 22)	3' UTR (NM_015194, exon 22 of 22)	6532	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
166261	chr3	112459401	112460000	+	0	NA	Intergenic	Intergenic	39772	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
49333	chr12	21989871	21990030	+	0	NA	Intergenic	Intergenic	-48524	NM_020297	10060		NM_005691	ENSG00000069431	ABCC9	ABC37|ATFB12|CANTU|CMD1O|IDMYS|SUR2	ATP binding cassette subfamily C member 9	protein-coding
108525	chr18	74367801	74368200	+	0	NA	Intergenic	Intergenic	-41448	NR_131977	101927606		NR_131977	ENSG00000259779	LINC01922	-	long intergenic non-protein coding RNA 1922	ncRNA
81115	chr16	4377471	4377930	+	0	NA	intron (NM_138440, intron 1 of 1)	intron (NM_138440, intron 1 of 1)	5852	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
160489	chr3	30616051	30616150	+	0	NA	intron (NM_003242, intron 1 of 6)	Arthur1|DNA|hAT-Tip100	9499	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
52268	chr12	54502401	54502950	+	0	NA	intron (NM_001184976, intron 3 of 30)	L1MC4|LINE|L1	3897	NM_001184976	3071		NM_005337	ENSG00000123338	NCKAP1L	HEM1|IMD72	NCK associated protein 1 like	protein-coding
132990	chr2	111527751	111527930	+	0	NA	Intergenic	Intergenic	-32679	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
20295	chr1	197145351	197145450	+	0	NA	intron (NM_018136, intron 1 of 27)	intron (NM_018136, intron 1 of 27)	1269	NM_018136	259266		NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	assembly factor for spindle microtubules	protein-coding
217541	chr8	29304271	29304630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-41380	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
107040	chr18	32109901	32110300	+	0	NA	intron (NM_198128, intron 1 of 4)	AluJr|SINE|Alu	17494	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
67814	chr14	73785171	73785330	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	1958	NM_001043318	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
202858	chr6	159788221	159788600	+	0	NA	intron (NM_030752, intron 1 of 11)	AluJr|SINE|Alu	1192	NM_030752	6950		NM_030752	ENSG00000120438	TCP1	CCT-alpha|CCT1|CCTa|D6S230E|TCP-1-alpha	t-complex 1	protein-coding
6144	chr1	27387071	27387430	+	0	NA	Intergenic	L2a|LINE|L2	-3917	NM_001330448	388611		NM_207397	ENSG00000174950	CD164L2	EAPG6122|UNQ6122	CD164 molecule like 2	protein-coding
85082	chr16	32939901	32940230	+	0	NA	Intergenic	Intergenic	-54923	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
212412	chr7	128167301	128167800	+	0	NA	Intergenic	CpG	-40322	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
145774	chr20	45364301	45364950	+	0	NA	intron (NM_033542, intron 2 of 3)	AluYa5|SINE|Alu	1456	NR_003189	767557		NR_003189	ENSG00000254806	SYS1-DBNDD2	C20orf169-DBNDD2	SYS1-DBNDD2 readthrough (NMD candidate)	ncRNA
174929	chr4	49120771	49121780	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	134633	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
209832	chr7	89003001	89003630	+	0	NA	intron (NM_181646, intron 1 of 3)	intron (NM_181646, intron 1 of 3)	-207578	NM_152706	219557		NM_152706	ENSG00000164645	TEX47	C7orf62|DYBLUF	testis expressed 47	protein-coding
156377	chr22	41095151	41095830	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluSz|SINE|Alu	2898	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
74712	chr15	63120671	63120830	+	0	NA	Intergenic	Intergenic	-1111	NM_032857	114294		NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
54182	chr12	77178821	77179130	+	0	NA	Intergenic	L1PA2|LINE|L1	-113406	NM_203394	144455		NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
5939	chr1	26881351	26881650	+	0	NA	intron (NM_018066, intron 4 of 4)	MER47A|DNA|TcMar-Tigger	8783	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
113399	chr19	9322151	9322450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1472	NM_001202410	84527		NM_032497	ENSG00000188321	ZNF559	NBLA00121	zinc finger protein 559	protein-coding
153319	chr22	24268101	24268300	+	0	NA	Intergenic	Intergenic	-2617	NR_103546	101730217		NR_103546	ENSG00000258555	SPECC1L-ADORA2A	-	SPECC1L-ADORA2A readthrough (NMD candidate)	ncRNA
22338	chr1	214331871	214332330	+	0	NA	exon (NM_020197, exon 10 of 12)	exon (NM_020197, exon 10 of 12)	50941	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
23858	chr1	234776551	234776650	+	0	NA	Intergenic	Intergenic	-16544	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
76436	chr15	74801401	74801800	+	0	NA	intron (NM_001127190, intron 11 of 13)	intron (NM_001127190, intron 11 of 13)	-11235	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
60673	chr13	43075021	43075650	+	0	NA	intron (NM_013238, intron 3 of 5)	intron (NM_013238, intron 3 of 5)	-37830	NR_047013	100874159		NR_047013		LINC00400	-	long intergenic non-protein coding RNA 400	ncRNA
205755	chr7	23512071	23512800	+	0	NA	intron (NM_001362759, intron 3 of 6)	AluJr|SINE|Alu	19546	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
199003	chr6	110962921	110963180	+	0	NA	intron (NM_138408, intron 5 of 5)	AluSc|SINE|Alu	4344	NM_138408	112495		NM_138408	ENSG00000155115	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC subunit 6	protein-coding
50330	chr12	47071171	47071880	+	0	NA	Intergenic	MIRb|SINE|MIR	-8078	NM_001281429	91523		NM_138371	ENSG00000179715	PCED1B	FAM113B	PC-esterase domain containing 1B	protein-coding
67037	chr14	67621471	67622280	+	0	NA	intron (NM_001172, intron 2 of 7)	AluSx|SINE|Alu	1955	NM_001172	384		NM_001172	ENSG00000081181	ARG2	-	arginase 2	protein-coding
181532	chr5	43065721	43067800	+	0	NA	promoter-TSS (NR_102752)	promoter-TSS (NR_102752)	211	NR_034127	100132356		NM_175919		LOC100132356	-	uncharacterized LOC100132356	ncRNA
77233	chr15	81288001	81288200	+	0	NA	intron (NM_172217, intron 10 of 18)	intron (NM_172217, intron 10 of 18)	-8870	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
23151	chr1	226723631	226724900	+	0	NA	intron (NM_002221, intron 2 of 7)	MIRb|SINE|MIR	14910	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
1457	chr1	2660971	2661480	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-28209	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
32463	chr10	102644701	102645700	+	0	NA	intron (NM_001345950, intron 1 of 4)	CpG-3318	705	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
132646	chr2	108725901	108726730	+	0	NA	intron (NM_006267, intron 1 of 28)	Tigger7|DNA|TcMar-Tigger	6833	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
51896	chr12	53616951	53617050	+	0	NA	intron (NR_159377, intron 1 of 14)	intron (NR_159377, intron 1 of 14)	8990	NM_001366562	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
129706	chr2	70785251	70785630	+	0	NA	exon (NM_001004311, exon 3 of 5)	exon (NM_001004311, exon 3 of 5)	5203	NM_001004311	344018		NM_001004311	ENSG00000183733	FIGLA	BHLHC8|FIGALPHA|POF6	folliculogenesis specific bHLH transcription factor	protein-coding
186720	chr5	139246301	139246530	+	0	NA	Intergenic	Intergenic	-27337	NM_001282278	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
226839	chr9	77945871	77946030	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	85861	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
72030	chr15	28136221	28136680	+	0	NA	intron (NM_004667, intron 78 of 92)	intron (NM_004667, intron 78 of 92)	-37135	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
145673	chr20	44982871	44983030	+	0	NA	intron (NM_006282, intron 4 of 10)	L2a|LINE|L2	16438	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
87697	chr16	74699971	74701500	+	0	NA	5' UTR (NM_152649, exon 1 of 11)	5' UTR (NM_152649, exon 1 of 11)	127	NM_001142497	197259		NM_152649	ENSG00000168404	MLKL	hMLKL	mixed lineage kinase domain like pseudokinase	protein-coding
232140	chr9	134034171	134034330	+	0	NA	intron (NM_007371, intron 11 of 11)	intron (NM_007371, intron 11 of 11)	8769	NM_001355256	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
189523	chr5	173689751	173690050	+	0	NA	intron (NR_146727, intron 1 of 2)	intron (NR_146727, intron 1 of 2)	441	NR_146727	105377736		NR_146727	ENSG00000253428	LINC01942	-	long intergenic non-protein coding RNA 1942	ncRNA
218246	chr8	42146421	42146900	+	0	NA	Intergenic	Intergenic	-6286	NM_001134296	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
201823	chr6	150027401	150027950	+	0	NA	Intergenic	Intergenic	-2143	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
58379	chr12	131827121	131827400	+	0	NA	Intergenic	Intergenic	-1133	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
138824	chr2	216354101	216354300	+	0	NA	intron (NM_020814, intron 1 of 3)	intron (NM_020814, intron 1 of 3)	18283	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
179866	chr5	554651	555430	+	0	NA	Intergenic	CpG	-19158	NR_039661	100616381		NR_039661	ENSG00000264233	MIR4456	-	microRNA 4456	ncRNA
159723	chr3	15791451	15791750	+	0	NA	intron (NM_001349285, intron 2 of 2)	L1MA1|LINE|L1	6379	NM_001349284	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
226765	chr9	76447151	76447950	+	0	NA	intron (NM_001097634, intron 1 of 2)	intron (NM_001097634, intron 1 of 2)	5884	NM_001097634	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
53493	chr12	66289301	66289850	+	0	NA	Intergenic	FordPrefect_a|DNA|hAT-Tip100	-12918	NM_001370285	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
156520	chr22	41403571	41404580	+	0	NA	Intergenic	Intergenic	22133	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
5617	chr1	26155871	26156030	+	0	NA	Intergenic	Intergenic	-3129	NM_024869	79927		NM_024869	ENSG00000197245	FAM110D	GRRP1	family with sequence similarity 110 member D	protein-coding
199309	chr6	112089551	112089650	+	0	NA	intron (NM_001033564, intron 1 of 3)	HAL1b|LINE|L1	2009	NM_001033564	619208		NM_001033564	ENSG00000203778	FAM229B	C6orf225	family with sequence similarity 229 member B	protein-coding
177400	chr4	112279101	112280200	+	0	NA	intron (NM_052864, intron 1 of 1)	L1MC4a|LINE|L1	6254	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
88605	chr16	85602301	85603000	+	0	NA	Intergenic	Intergenic	-8759	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
113093	chr19	8276421	8276880	+	0	NA	Intergenic	L2|LINE|L2	31708	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
16318	chr1	154198171	154198330	+	0	NA	TTS (NM_001010979)	TTS (NM_001010979)	-4507	NR_030600	100126346		NR_030600	ENSG00000215938	MIR190B	MIRN190B|mir-190b	microRNA 190b	ncRNA
153013	chr22	23216101	23217330	+	0	NA	intron (NM_021574, intron 1 of 21)	MLT1H|LTR|ERVL-MaLR	36206	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
55359	chr12	104215371	104216600	+	0	NA	intron (NM_001093771, intron 1 of 16)	CpG	206	NM_001093771	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
51351	chr12	51531501	51532230	+	0	NA	Intergenic	Intergenic	-59368	NM_001330260	6334		NM_014191	ENSG00000196876	SCN8A	BFIS5|CERIII|CIAT|DEE13|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4	sodium voltage-gated channel alpha subunit 8	protein-coding
89838	chr16	89585921	89586280	+	0	NA	intron (NM_153636, intron 7 of 14)	intron (NM_153636, intron 7 of 14)	10342	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
65216	chr14	49775971	49776130	+	0	NA	intron (NM_014315, intron 3 of 12)	Charlie15a|DNA|hAT-Charlie	7897	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
192772	chr6	26501151	26502230	+	0	NA	exon (NM_001732, exon 3 of 8)	exon (NM_001732, exon 3 of 8)	1387	NM_001732	696		NM_001732	ENSG00000124557	BTN1A1	BT|BTN|BTN1	butyrophilin subfamily 1 member A1	protein-coding
59773	chr13	30152251	30152350	+	0	NA	intron (NR_138041, intron 1 of 1)	MLT1F|LTR|ERVL-MaLR	774	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
234177	chrX	11768101	11768330	+	0	NA	TTS (NM_078628)	TTS (NM_078628)	8568	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
172388	chr4	1765451	1766580	+	0	NA	Intergenic	Intergenic	-27278	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
30855	chr10	86539971	86540330	+	0	NA	Intergenic	Intergenic	-18358	NM_015045	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
173221	chr4	6906501	6906900	+	0	NA	Intergenic	Intergenic	-2744	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
104179	chr17	80423221	80423480	+	0	NA	intron (NM_001164638, intron 3 of 7)	intron (NM_001164638, intron 3 of 7)	3932	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
49654	chr12	28723501	28723650	+	0	NA	Intergenic	Intergenic	-425703	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
216853	chr8	22611271	22611630	+	0	NA	intron (NM_021174, intron 7 of 20)	(TA)n|Simple_repeat|Simple_repeat	6408	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
71699	chr15	20248471	20248830	+	0	NA	Intergenic	Intergenic	-34094	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
75691	chr15	67835451	67835920	+	0	NA	non-coding (NR_120345, exon 3 of 3)	non-coding (NR_120345, exon 3 of 3)	3194	NR_120345	101929076		NR_120345	ENSG00000245719	SKOR1-AS1	-	SKOR1 antisense RNA 1	ncRNA
165928	chr3	107433171	107433530	+	0	NA	intron (NR_110039, intron 1 of 2)	intron (NR_110039, intron 1 of 2)	2420	NR_110039	101929607		NR_110039	ENSG00000273125	LINC01990	-	long intergenic non-protein coding RNA 1990	ncRNA
99019	chr17	48835701	48836550	+	0	NA	intron (NM_001261395, intron 1 of 11)	MamSINE1|SINE|tRNA-RTE	5090	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
63958	chr14	22118421	22118680	+	0	NA	Intergenic	L1MDa|LINE|L1	314203	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
16582	chr1	155013471	155014530	+	0	NA	intron (NM_001377451, intron 4 of 5)	intron (NM_001377451, intron 4 of 5)	11198	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
127891	chr2	46187201	46187490	+	0	NA	3' UTR (NM_005400, exon 15 of 15)	3' UTR (NM_005400, exon 15 of 15)	-110062	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
17999	chr1	160539271	160539430	+	0	NA	Intergenic	MER68|LTR|ERVL	-16095	NM_001184714	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
89131	chr16	88509651	88510380	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	21038	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
151732	chr22	17771621	17772150	+	0	NA	intron (NM_001244567, intron 1 of 5)	intron (NM_001244567, intron 1 of 5)	2157	NM_197966	637		NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
179898	chr5	676001	676580	+	0	NA	intron (NM_007030, intron 2 of 3)	intron (NM_007030, intron 2 of 3)	17062	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
146521	chr20	49921821	49922080	+	0	NA	intron (NR_134564, intron 2 of 2)	SVA_D|Retroposon|SVA	6128	NR_134564	105372653		NR_134564		LOC105372653	-	uncharacterized LOC105372653	ncRNA
111346	chr19	3664801	3665000	+	0	NA	exon (NM_012398, exon 3 of 18)	exon (NM_012398, exon 3 of 18)	35568	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
27914	chr10	41898301	41898500	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	469645	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
143652	chr20	31871421	31871850	+	0	NA	promoter-TSS (NM_080611)	promoter-TSS (NM_080611)	-891	NM_080611	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
48568	chr12	10282851	10283350	+	0	NA	intron (NM_001351060, intron 2 of 8)	LTR33A_|LTR|ERVL	-21346	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
80612	chr16	2962901	2963560	+	0	NA	Intergenic	(GCTGG)n|Simple_repeat|Simple_repeat	-1045	NM_001253726	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
74224	chr15	56464751	56465380	+	0	NA	promoter-TSS (NM_018365)	promoter-TSS (NM_018365)	72	NM_018365	55329		NM_018365	ENSG00000138587	MNS1	HTX9|SPATA40	meiosis specific nuclear structural 1	protein-coding
12321	chr1	100951571	100951930	+	0	NA	intron (NM_133496, intron 8 of 10)	intron (NM_133496, intron 8 of 10)	55660	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
4343	chr1	20632201	20632400	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1158	NM_032409	65018		NM_032409	ENSG00000158828	PINK1	BRPK|PARK6	PTEN induced kinase 1	protein-coding
40770	chr11	64863301	64863750	+	0	NA	intron (NM_001282444, intron 4 of 6)	intron (NM_001282444, intron 4 of 6)	15084	NR_162101	113218486		NR_162101		MIR10392	-	microRNA 10392	ncRNA
162485	chr3	48562221	48562850	+	0	NA	3' UTR (NM_033199, exon 2 of 2)	3' UTR (NM_033199, exon 2 of 2)	1246	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
214745	chr7	151055571	151055730	+	0	NA	intron (NM_001164410, intron 5 of 10)	intron (NM_001164410, intron 5 of 10)	2247	NM_001164410	1020		NM_004935	ENSG00000164885	CDK5	LIS7|PSSALRE	cyclin dependent kinase 5	protein-coding
34414	chr10	132401601	132401800	+	0	NA	intron (NM_138499, intron 1 of 2)	intron (NM_138499, intron 1 of 2)	4500	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
238849	chrX	154473851	154474380	+	0	NA	3' UTR (NM_017514, exon 33 of 33)	3' UTR (NM_017514, exon 33 of 33)	5142	NM_006014	8270		NM_006014	ENSG00000196976	LAGE3	CVG5|DXS9879E|DXS9951E|ESO3|GAMOS2|ITBA2|Pcc1	L antigen family member 3	protein-coding
159624	chr3	15276621	15277080	+	0	NA	intron (NM_004844, intron 3 of 8)	intron (NM_004844, intron 3 of 8)	22666	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
108847	chr18	79199771	79200270	+	0	NA	intron (NM_198531, intron 9 of 29)	Tigger3b|DNA|TcMar-Tigger	130626	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
237220	chrX	109635201	109635450	+	0	NA	Intergenic	Intergenic	-10153	NM_012282	23630		NM_012282	ENSG00000176076	KCNE5	KCNE1L	potassium voltage-gated channel subfamily E regulatory subunit 5	protein-coding
143902	chr20	32582971	32583600	+	0	NA	intron (NM_001256798, intron 1 of 10)	CpG	2048	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
92661	chr17	10699521	10701200	+	0	NA	intron (NM_020233, intron 1 of 3)	intron (NM_020233, intron 1 of 3)	2766	NM_020233	56985		NM_020233	ENSG00000170222	ADPRM	C17orf48|MDS006|NBLA03831	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding
233401	chr9	137561621	137561880	+	0	NA	intron (NM_001346372, intron 8 of 8)	L1MC4|LINE|L1	9871	NM_032477	64975		NM_032477	ENSG00000182154	MRPL41	BMRP|MRP-L27|MRPL27|PIG3|RPML27|mL41	mitochondrial ribosomal protein L41	protein-coding
174194	chr4	36394201	36395000	+	0	NA	Intergenic	L1MC3|LINE|L1	31828	NR_031701	100313806		NR_031701	ENSG00000283207	MIR1255B1	MIR1255B-1|MIRN1255B1	microRNA 1255b-1	ncRNA
33298	chr10	114801221	114802030	+	0	NA	Intergenic	LTR50|LTR|ERVL	-20155	NM_020940	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
182250	chr5	57182301	57182900	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluSg|SINE|Alu	7152	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
39810	chr11	62009951	62010250	+	0	NA	Intergenic	AluY|SINE|Alu	-42466	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
48739	chr12	10717371	10717750	+	0	NA	intron (NM_003651, intron 3 of 9)	intron (NM_003651, intron 3 of 9)	5763	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
162618	chr3	48710221	48711000	+	0	NA	intron (NM_016291, intron 1 of 5)	intron (NM_016291, intron 1 of 5)	6611	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
37753	chr11	31871071	31871230	+	0	NA	intron (NR_033971, intron 1 of 2)	intron (NR_033971, intron 1 of 2)	44583	NR_117094	103157000		NR_117094	ENSG00000281880	PAUPAR	-	PAX6 upstream antisense RNA	ncRNA
38162	chr11	36258801	36259000	+	0	NA	Intergenic	Intergenic	30524	NM_001307932	29099		NM_014186	ENSG00000110442	COMMD9	C11orf55|HSPC166|LINC00610	COMM domain containing 9	protein-coding
84057	chr16	29584951	29586080	+	0	NA	intron (NR_135305, intron 1 of 13)	intron (NR_135305, intron 1 of 13)	9577	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
37086	chr11	13047871	13048040	+	0	NA	Intergenic	L1MB7|LINE|L1	38639	NM_001080521	644943		NM_001080521	ENSG00000189431	RASSF10	-	Ras association domain family member 10	protein-coding
159170	chr3	12811801	12812200	+	0	NA	intron (NM_012298, intron 3 of 12)	AluSx|SINE|Alu	15320	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
40250	chr11	63670671	63672130	+	0	NA	promoter-TSS (NM_015459)	promoter-TSS (NM_015459)	-24	NM_015459	25923		NM_015459	ENSG00000184743	ATL3	HSN1F	atlastin GTPase 3	protein-coding
5902	chr1	26823101	26823500	+	0	NA	Intergenic	Intergenic	-3388	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
8946	chr1	44221321	44221780	+	0	NA	TTS (NM_001034023)	TTS (NM_001034023)	8079	NM_019100	55929		NM_019100	ENSG00000178028	DMAP1	DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4	DNA methyltransferase 1 associated protein 1	protein-coding
218279	chr8	42280351	42280980	+	0	NA	intron (NM_001242778, intron 2 of 20)	intron (NM_001242778, intron 2 of 20)	9363	NM_001242778	3551		NM_001556	ENSG00000104365	IKBKB	IKK-2|IKK-beta|IKK2|IKKB|IMD15|IMD15A|IMD15B|NFKBIKB	inhibitor of nuclear factor kappa B kinase subunit beta	protein-coding
122342	chr19	49209821	49211100	+	0	NA	intron (NM_001321282, intron 20 of 23)	CpG	52668	NM_001321283	54795		NM_017636	ENSG00000130529	TRPM4	EKVP6|LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
108341	chr18	67241171	67241800	+	0	NA	Intergenic	Intergenic	159901	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
143535	chr20	31572671	31574430	+	0	NA	promoter-TSS (NR_046853)	promoter-TSS (NR_046853)	-287	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
32070	chr10	101092501	101092900	+	0	NA	intron (NR_130723, intron 2 of 2)	L1ME4b|LINE|L1	26317	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
90482	chr17	1395871	1396330	+	0	NA	intron (NR_024058, intron 1 of 6)	AluSq2|SINE|Alu	4122	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
197465	chr6	75269021	75269580	+	0	NA	intron (NM_018247, intron 1 of 6)	L1MC1|LINE|L1	15492	NM_018247	55754		NM_018247	ENSG00000112697	TMEM30A	C6orf67|CDC50A	transmembrane protein 30A	protein-coding
202677	chr6	158791521	158792150	+	0	NA	intron (NM_003379, intron 1 of 12)	AluY|SINE|Alu	-26144	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
132679	chr2	108785001	108785200	+	0	NA	3' UTR (NM_006267, exon 29 of 29)	3' UTR (NM_006267, exon 29 of 29)	-1650	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
141429	chr2	240996651	240997620	+	0	NA	Intergenic	Intergenic	-1483	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
77315	chr15	82441421	82441980	+	0	NA	Intergenic	Intergenic	3169	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
37273	chr11	14674201	14674400	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	30496	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
25578	chr10	8033321	8033580	+	0	NA	Intergenic	Intergenic	19041	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
36476	chr11	6232151	6232250	+	0	NA	intron (NM_001098794, intron 1 of 11)	intron (NM_001098794, intron 1 of 11)	2436	NM_032127	84067		NM_032127	ENSG00000051009	FHIP1B	C11orf56|FAM160A2|FHIP	FHF complex subunit HOOK interacting protein 1B	protein-coding
125719	chr2	20576071	20577750	+	0	NA	Intergenic	Intergenic	15638	NR_046836	100874343		NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1	ncRNA
80435	chr16	2644901	2645100	+	0	NA	non-coding (NR_024492, exon 1 of 1)	non-coding (NR_024492, exon 1 of 1)	6018	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
63241	chr13	113936601	113936800	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-7709	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
149171	chr21	17900601	17900800	+	0	NA	Intergenic	L1PB1|LINE|L1	-15092	NR_024354	54075		NR_024354		CHODL-AS1	C21orf39|NCRNA00157	CHODL antisense RNA 1	ncRNA
176235	chr4	86544321	86544980	+	0	NA	Intergenic	Intergenic	-2098	NR_039657	100616463		NR_039657	ENSG00000266515	MIR4452	-	microRNA 4452	ncRNA
39458	chr11	60975651	60976330	+	0	NA	intron (NM_006725, intron 1 of 12)	MamRep1151|LTR?|LTR?	4310	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
124522	chr2	177521	177980	+	0	NA	Intergenic	Intergenic	78590	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
97903	chr17	45125821	45126430	+	0	NA	intron (NM_133373, intron 1 of 14)	AluY|SINE|Alu	6390	NM_133373	113026		NM_133373	ENSG00000161714	PLCD3	PLC-delta-3	phospholipase C delta 3	protein-coding
217325	chr8	27461721	27462100	+	0	NA	intron (NM_001347705, intron 6 of 6)	intron (NM_001347705, intron 6 of 6)	17351	NM_000742	1135		NM_000742	ENSG00000120903	CHRNA2	-	cholinergic receptor nicotinic alpha 2 subunit	protein-coding
80957	chr16	3870751	3871530	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	8980	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
59253	chr13	23995821	23996080	+	0	NA	intron (NR_104595, intron 2 of 4)	intron (NR_104595, intron 2 of 4)	16148	NR_104595	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
197572	chr6	79713701	79714000	+	0	NA	Intergenic	Intergenic	82521	NM_031469	83699		NM_031469	ENSG00000198478	SH3BGRL2	-	SH3 domain binding glutamate rich protein like 2	protein-coding
43868	chr11	88327671	88328030	+	0	NA	intron (NM_148170, intron 3 of 3)	intron (NM_148170, intron 3 of 3)	9886	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
44618	chr11	108677521	108677600	+	0	NA	intron (NM_004398, intron 4 of 17)	intron (NM_004398, intron 4 of 17)	12491	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
92879	chr17	16428901	16429230	+	0	NA	intron (NM_016113, intron 10 of 14)	intron (NM_016113, intron 10 of 14)	-9922	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
169515	chr3	170032321	170032580	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-5545	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
215900	chr8	8138951	8140280	+	0	NA	intron (NR_147089, intron 2 of 3)	HERVS71-int|LTR|ERV1	-50526	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
125687	chr2	20335971	20337030	+	0	NA	intron (NM_001352925, intron 1 of 19)	intron (NM_001352925, intron 1 of 19)	-9114	NM_001282790	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
57478	chr12	122063951	122064350	+	0	NA	intron (NR_135044, intron 1 of 3)	intron (NR_135044, intron 1 of 3)	860	NR_135044	100506691		NR_135044	ENSG00000256546	LINC02985	-	long intergenic non-protein coding RNA 2985	ncRNA
173843	chr4	21765871	21766030	+	0	NA	intron (NM_147182, intron 1 of 8)	MamGypLTR3|LTR|Gypsy	-68255	NM_001035003	80333		NM_025221	ENSG00000185774	KCNIP4	CALP|KCHIP4	potassium voltage-gated channel interacting protein 4	protein-coding
204968	chr7	6378201	6378400	+	0	NA	intron (NM_018890, intron 1 of 6)	AluSq2|SINE|Alu	3773	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
15630	chr1	150632551	150632900	+	0	NA	Intergenic	AluSx|SINE|Alu	-3103	NM_207168	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
20486	chr1	198638521	198639380	+	0	NA	promoter-TSS (NM_001267798)	promoter-TSS (NM_001267798)	-18	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
13036	chr1	111224421	111224700	+	0	NA	Intergenic	Intergenic	-3099	NM_001025197	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
127397	chr2	41879201	41879400	+	0	NA	intron (NR_033996, intron 1 of 2)	intron (NR_033996, intron 1 of 2)	1745	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
111073	chr19	3164351	3164450	+	0	NA	TTS (NM_002068)	TTS (NM_002068)	-9225	NR_110670	100996351		NR_110670	ENSG00000267551	GNA15-DT	-	GNA15 divergent transcript	ncRNA
115156	chr19	14409401	14412050	+	0	NA	intron (NR_046366, intron 5 of 9)	intron (NR_046366, intron 5 of 9)	8616	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
43161	chr11	75343551	75343900	+	0	NA	intron (NM_020251, intron 1 of 14)	L2c|LINE|L2	7936	NM_004041	408		NM_004041	ENSG00000137486	ARRB1	ARB1|ARR1	arrestin beta 1	protein-coding
49215	chr12	17282321	17282400	+	0	NA	Intergenic	L1PB1|LINE|L1	293613	NR_036619	728622		NR_036619		SKP1P2	SKP1B|p19B	S-phase kinase associated protein 1 pseudogene 2	pseudo
215650	chr8	378001	378300	+	0	NA	non-coding (NR_103537, exon 3 of 4)	non-coding (NR_103537, exon 3 of 4)	5024	NR_103537	157693		NR_103537	ENSG00000182366	FAM87A	-	family with sequence similarity 87 member A	ncRNA
55157	chr12	99984401	99984850	+	0	NA	promoter-TSS (NM_001352185)	promoter-TSS (NM_001352185)	29	NM_001352185	56899		NM_020140	ENSG00000185046	ANKS1B	AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
56088	chr12	110670071	110670530	+	0	NA	intron (NM_001256413, intron 2 of 6)	intron (NM_001256413, intron 2 of 6)	18815	NM_032369	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
100171	chr17	58627351	58628330	+	0	NA	intron (NM_198393, intron 3 of 32)	intron (NM_198393, intron 3 of 32)	64205	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
119048	chr19	39068271	39068430	+	0	NA	Intergenic	LTR12|LTR|ERV1	-16018	NM_001363687	390928		NM_001004318	ENSG00000183760	ACP7	PAPL|PAPL1	acid phosphatase 7, tartrate resistant (putative)	protein-coding
131021	chr2	88015811	88017800	+	0	NA	Intergenic	CpG	-31015	NM_001024457	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
222943	chr8	143029221	143029850	+	0	NA	Intergenic	Intergenic	-9674	NR_149322	286122		NR_126398	ENSG00000177335	LY6S-AS1	C8orf31|LINC02904	LY6S antisense RNA 1	ncRNA
23410	chr1	228278121	228278730	+	0	NA	intron (NM_052843, intron 25 of 80)	G-rich|Low_complexity|Low_complexity	-64761	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
58177	chr12	124988731	124990580	+	0	NA	promoter-TSS (NM_032656)	promoter-TSS (NM_032656)	-524	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
181655	chr5	50412001	50412380	+	0	NA	intron (NM_198449, intron 2 of 8)	intron (NM_198449, intron 2 of 8)	29098	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
188458	chr5	154502901	154503300	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-24873	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
204996	chr7	6442071	6442650	+	0	NA	intron (NM_139179, intron 2 of 14)	intron (NM_139179, intron 2 of 14)	5594	NM_139179	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
156871	chr22	42086271	42086430	+	0	NA	intron (NM_002490, intron 2 of 2).2	intron (NM_002490, intron 2 of 2).2	4422	NM_002490	4700		NM_002490	ENSG00000184983	NDUFA6	B14|CI-B14|LYRM6|MC1DN33|NADHB14	NADH:ubiquinone oxidoreductase subunit A6	protein-coding
120818	chr19	45483971	45484330	+	0	NA	Intergenic	AluJr4|SINE|Alu	9103	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
10659	chr1	70413421	70413680	+	0	NA	intron (NM_153742, intron 1 of 10)	AluSg4|SINE|Alu	2282	NM_001902	1491		NM_001902	ENSG00000116761	CTH	CGL|CSE	cystathionine gamma-lyase	protein-coding
12091	chr1	99808521	99809080	+	0	NA	Intergenic	Intergenic	-41561	NM_000642	178		NM_000028	ENSG00000162688	AGL	GDE	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein-coding
162992	chr3	49721871	49722280	+	0	NA	TTS (NM_022064)	TTS (NM_022064)	1876	NM_021971	29925		NM_013334	ENSG00000173540	GMPPB	LGMDR19|MDDGA14|MDDGB14|MDDGC14	GDP-mannose pyrophosphorylase B	protein-coding
24601	chr1	246329971	246330130	+	0	NA	intron (NM_001375963, intron 4 of 11)	intron (NM_001375963, intron 4 of 11)	25490	NM_001375963	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
236550	chrX	72240001	72240580	+	0	NA	intron (NM_001170747, intron 3 of 3)	intron (NM_001170747, intron 3 of 3)	-1263	NM_017669	54821		NM_017669	ENSG00000186871	ERCC6L	PICH|RAD26L	ERCC excision repair 6 like, spindle assembly checkpoint helicase	protein-coding
178434	chr4	147821301	147822100	+	0	NA	intron (NM_024605, intron 1 of 22)	L1MC1|LINE|L1	39105	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
238876	chrX	154538851	154539350	+	0	NA	intron (NM_000402, intron 2 of 12)	intron (NM_000402, intron 2 of 12)	-2138	NM_001377312	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
177622	chr4	121178921	121179250	+	0	NA	intron (NM_001128843, intron 3 of 12)	intron (NM_001128843, intron 3 of 12)	-14764	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
146345	chr20	49244121	49244380	+	0	NA	TTS (NM_001348187)	TTS (NM_001348187)	24834	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
140202	chr2	231692921	231693180	+	0	NA	Intergenic	Intergenic	-15475	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
181905	chr5	54645221	54645550	+	0	NA	Intergenic	Intergenic	57939	NR_104659	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
146870	chr20	51490851	51491150	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	-38023	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
29664	chr10	72030451	72031350	+	0	NA	Intergenic	MER67A|LTR|ERV1	57651	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
68716	chr14	90756871	90757280	+	0	NA	intron (NM_001010854, intron 3 of 19)	intron (NM_001010854, intron 3 of 19)	59342	NM_001320421	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
148556	chr20	64244851	64245600	+	0	NA	Intergenic	Intergenic	-10470	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
219582	chr8	79769701	79770050	+	0	NA	non-coding (NR_110954, exon 6 of 6)	non-coding (NR_110954, exon 6 of 6)	1733	NR_125410	101927067		NR_125410	ENSG00000272138	LINC01607	-	long intergenic non-protein coding RNA 1607	ncRNA
81534	chr16	9101571	9102080	+	0	NA	intron (NM_014117, intron 2 of 3)	intron (NM_014117, intron 2 of 3)	10181	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
9798	chr1	53600021	53600950	+	0	NA	intron (NM_001367484, intron 2 of 10)	MIRb|SINE|MIR	133719	NM_147193	148979		NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
111379	chr19	3718151	3718450	+	0	NA	intron (NM_001267560, intron 1 of 20)	AluJr|SINE|Alu	-3437	NM_001267561	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
201241	chr6	143941901	143942600	+	0	NA	exon (NM_001317159, exon 8 of 8)	exon (NM_001317159, exon 8 of 8)	19160	NM_001317157	5325		NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
157250	chr22	43388121	43388730	+	0	NA	Intergenic	Intergenic	-11906	NR_146918	105373054		NR_146918	ENSG00000236117	LINC01639	-	long intergenic non-protein coding RNA 1639	ncRNA
195316	chr6	36600511	36600980	+	0	NA	intron (NR_036610, intron 4 of 6)	intron (NR_036610, intron 4 of 6)	6383	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
28558	chr10	50620851	50621150	+	0	NA	intron (NM_147156, intron 1 of 10)	AluJb|SINE|Alu	2956	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
107454	chr18	46497251	46497350	+	0	NA	intron (NM_144612, intron 36 of 39)	intron (NM_144612, intron 36 of 39)	21786	NM_001145473	125336		NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology PLAT domains 1	protein-coding
126209	chr2	26811521	26811780	+	0	NA	Intergenic	Intergenic	25594	NM_001809	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
150082	chr21	37407201	37407400	+	0	NA	intron (NM_001347723, intron 1 of 10)	Tigger4b|DNA|TcMar-Tigger	-11605	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
228486	chr9	100029901	100030100	+	0	NA	intron (NM_015051, intron 4 of 11)	AluSc|SINE|Alu	69000	NM_015051	23071		NM_015051	ENSG00000023318	ERP44	PDIA10|TXNDC4	endoplasmic reticulum protein 44	protein-coding
91767	chr17	6910921	6911180	+	0	NA	Intergenic	AluJr|SINE|Alu	17273	NR_120453	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
41231	chr11	65716951	65718280	+	0	NA	TTS (NM_032193)	TTS (NM_032193)	3183	NM_032193	84153		NM_032193	ENSG00000172922	RNASEH2C	AGS3|AYP1	ribonuclease H2 subunit C	protein-coding
183184	chr5	75611571	75612130	+	0	NA	intron (NM_001276713, intron 1 of 13)	CpG	397	NM_001276713	728780		NM_001271529	ENSG00000189045	ANKDD1B	-	ankyrin repeat and death domain containing 1B	protein-coding
45239	chr11	117976271	117976430	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	-10044	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
66565	chr14	63295321	63295580	+	0	NA	Intergenic	Intergenic	23485	NM_145171	122876		NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone subunit beta 5	protein-coding
83363	chr16	25106401	25107400	+	0	NA	intron (NR_120306, intron 1 of 2)	CpG	4655	NR_120306	102723510		NR_120306		LCMT1-AS1	-	LCMT1 antisense RNA 1	ncRNA
167947	chr3	136249821	136252150	+	0	NA	intron (NM_001178014, intron 1 of 15)	intron (NM_001178014, intron 1 of 15)	645	NM_000532	5096		NM_000532	ENSG00000114054	PCCB	-	propionyl-CoA carboxylase subunit beta	protein-coding
170921	chr3	194203601	194204180	+	0	NA	intron (NR_125403, intron 2 of 2)	intron (NR_125403, intron 2 of 2)	2417	NR_125404	100505920		NR_125403		LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
53075	chr12	57728621	57728880	+	0	NA	TTS (NR_027032)	TTS (NR_027032)	2510	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
130675	chr2	86436251	86436800	+	0	NA	Intergenic	L2|LINE|L2	-4846	NM_018433	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
194590	chr6	33447671	33448030	+	0	NA	exon (NM_001130066, exon 17 of 18)	exon (NM_001130066, exon 17 of 18)	-6726	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
45988	chr11	121494421	121495080	+	0	NA	intron (NM_003105, intron 5 of 47)	intron (NM_003105, intron 5 of 47)	-12961	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
186173	chr5	134195251	134195600	+	0	NA	TTS (NM_001355019)	TTS (NM_001355019)	-18392	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
221416	chr8	123542751	123543080	+	0	NA	Intergenic	AluJb|SINE|Alu	-1709	NM_001242463	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
104146	chr17	80386251	80386550	+	0	NA	exon (NM_001256071, exon 62 of 68)	exon (NM_001256071, exon 62 of 68)	-28767	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
66590	chr14	63513651	63513950	+	0	NA	intron (NM_006246, intron 2 of 13)	intron (NM_006246, intron 2 of 13)	-5562	NM_001282182	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
89720	chr16	89415671	89416480	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-14843	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
204640	chr7	5415671	5416030	+	0	NA	intron (NM_001080495, intron 2 of 29)	AluSx1|SINE|Alu	7696	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
109202	chr19	410901	411100	+	0	NA	Intergenic	Intergenic	-1853	NM_001136263	126567		NM_001136263	ENSG00000183186	C2CD4C	FAM148C|KIAA1957|NLF3	C2 calcium dependent domain containing 4C	protein-coding
185824	chr5	132453121	132453380	+	0	NA	intron (NR_161242, intron 3 of 3)	HAL1ME|LINE|L1	37523	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
122193	chr19	48936951	48937850	+	0	NA	intron (NM_014475, intron 3 of 6)	AluSx|SINE|Alu	3701	NM_014475	27294		NM_014475	ENSG00000104808	DHDH	2DD|HUM2DD	dihydrodiol dehydrogenase	protein-coding
164481	chr3	59994701	59995100	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	86009	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
212741	chr7	129910921	129911530	+	0	NA	intron (NM_001202498, intron 1 of 6)	AluSc8|SINE|Alu	41735	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
147251	chr20	57425321	57425850	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-32529	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
205636	chr7	22587421	22587680	+	0	NA	Intergenic	Intergenic	24213	NR_038393	100506178		NR_038393	ENSG00000232759	STEAP1B-AS1	-	STEAP1B antisense RNA 1	ncRNA
39545	chr11	61113001	61113830	+	0	NA	intron (NM_014207, intron 1 of 10)	intron (NM_014207, intron 1 of 10)	10926	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
154604	chr22	36295201	36295730	+	0	NA	intron (NM_002473, intron 26 of 40)	intron (NM_002473, intron 26 of 40)	-8558	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
89637	chr16	89329571	89329730	+	0	NA	intron (NR_045839, intron 2 of 9)	L1MC5|LINE|L1	9198	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
209442	chr7	76398801	76399550	+	0	NA	intron (NM_080744, intron 4 of 10)	AluSx1|SINE|Alu	1653	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
105130	chr17	82227071	82227630	+	0	NA	Intergenic	Intergenic	-1056	NM_001042422	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
68388	chr14	80664771	80664930	+	0	NA	intron (NR_157142, intron 19 of 24)	intron (NR_157142, intron 19 of 24)	276888	NR_157142	145508		NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding
151084	chr21	44824101	44824500	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-6171	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
129935	chr2	73753951	73754250	+	0	NA	Intergenic	LTR13|LTR|ERVK	-16694	NM_001330387	51002		NM_016058	ENSG00000144034	TPRKB	CGI-121|CGI121|GAMOS5	TP53RK binding protein	protein-coding
98758	chr17	48104471	48105000	+	0	NA	Intergenic	AluJb|SINE|Alu	-2798	NM_001330320	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
11330	chr1	89519501	89520330	+	0	NA	Intergenic	Intergenic	-4914	NM_015350	23507		NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 VRAC subunit B	protein-coding
75197	chr15	64820671	64820830	+	0	NA	intron (NM_001286497, intron 7 of 12)	L2b|LINE|L2	4897	NM_001286496	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
21567	chr1	206463201	206463800	+	0	NA	3' UTR (NM_001377444, exon 24 of 24)	3' UTR (NM_001377444, exon 24 of 24)	-6976	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
128225	chr2	54092921	54093930	+	0	NA	intron (NM_001320586, intron 4 of 6)	HAL1ME|LINE|L1	-22190	NM_001320590	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
108868	chr18	79382151	79382800	+	0	NA	Intergenic	Intergenic	-13455	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
154954	chr22	37256171	37256530	+	0	NA	Intergenic	Intergenic	-12081	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
158014	chr22	49905471	49905830	+	0	NA	intron (NM_024105, intron 7 of 9)	MSTA|LTR|ERVL-MaLR	12788	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
118094	chr19	34400471	34400830	+	0	NA	3' UTR (NM_001329911, exon 18 of 18)	3' UTR (NM_001329911, exon 18 of 18)	-3748	NM_001353433	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
76574	chr15	75307951	75308250	+	0	NA	Intergenic	Intergenic	25259	NM_001145224	653643		NM_001145224	ENSG00000140478	GOLGA6D	-	golgin A6 family member D	protein-coding
10896	chr1	81505301	81505530	+	0	NA	intron (NM_001366003, intron 3 of 27)	intron (NM_001366003, intron 3 of 27)	52287	NR_125943	101927434		NR_125943	ENSG00000234953	LOC101927434	-	uncharacterized LOC101927434	ncRNA
226449	chr9	71699271	71699430	+	0	NA	intron (NM_001135820, intron 18 of 22)	AluJr|SINE|Alu	69163	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
127379	chr2	39586051	39586150	+	0	NA	intron (NR_037875, intron 5 of 5)	LTR12C|LTR|ERV1	-79398	NM_001167959	130733		NM_152390	ENSG00000152154	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding
5733	chr1	26429821	26430080	+	0	NA	TTS (NM_024674)	TTS (NM_024674)	-2332	NM_001319959	79947		NM_024887	ENSG00000117682	DHDDS	CIT|CPT|DEDSM|DS|HDS|RP59|hCIT	dehydrodolichyl diphosphate synthase subunit	protein-coding
148752	chr21	7775351	7776100	+	0	NA	Intergenic	Intergenic	-5177	NM_001282537	101928147		NM_001282537	ENSG00000222018	C21orf140	FAM243A	chromosome 21 open reading frame 140	protein-coding
219786	chr8	81156501	81157450	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-44907	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
69097	chr14	92259821	92260280	+	0	NA	Intergenic	MIR|SINE|MIR	-62531	NM_153648	123041		NM_153646	ENSG00000140090	SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 member 4	protein-coding
68512	chr14	88559471	88560480	+	0	NA	Intergenic	Intergenic	-3062	NM_001326310	79882		NM_024824	ENSG00000100722	ZC3H14	MRT56|MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
79293	chr16	542401	542600	+	0	NA	promoter-TSS (NR_036137)	promoter-TSS (NR_036137)	-777	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
230191	chr9	127800901	127801430	+	0	NA	Intergenic	AluJr|SINE|Alu	-1693	NM_001288803	2356		NM_004957	ENSG00000136877	FPGS	-	folylpolyglutamate synthase	protein-coding
175662	chr4	76947651	76947950	+	0	NA	Intergenic	AluSg|SINE|Alu	-1952	NM_018243	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
137642	chr2	197392071	197392230	+	0	NA	3' UTR (NM_012433, exon 25 of 25)	3' UTR (NM_012433, exon 25 of 25)	42878	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
218297	chr8	42412271	42412880	+	0	NA	Intergenic	Intergenic	20695	NM_005662	7419		NM_005662	ENSG00000078668	VDAC3	HD-VDAC3|VDAC-3	voltage dependent anion channel 3	protein-coding
85553	chr16	53376201	53376400	+	0	NA	intron (NR_119378, intron 1 of 2)	AluJb|SINE|Alu	2807	NR_119378	102723373		NR_119378		LOC102723373	-	uncharacterized LOC102723373	ncRNA
181360	chr5	40507101	40507350	+	0	NA	Intergenic	Intergenic	-172690	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
130941	chr2	87502871	87503430	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	33200	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
53820	chr12	69325151	69325250	+	0	NA	Intergenic	Intergenic	-23181	NM_000239	4069		NM_000239	ENSG00000090382	LYZ	LYZF1|LZM	lysozyme	protein-coding
202699	chr6	158811351	158812050	+	0	NA	intron (NM_003379, intron 1 of 12)	AluJo|SINE|Alu	-6279	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
132697	chr2	108974751	108975080	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	14305	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
78666	chr15	94577001	94577230	+	0	NA	Intergenic	MER73|LTR|ERVL	221185	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
194329	chr6	32847951	32848350	+	0	NA	intron (NM_001292022, intron 7 of 10).7	intron (NM_001292022, intron 7 of 10).7	-3471	NM_004159	5696		NM_004159	ENSG00000204264	PSMB8	ALDD|D6S216|D6S216E|JMP|LMP7|NKJO|PRAAS1|PSMB5i|RING10	proteasome 20S subunit beta 8	protein-coding
101401	chr17	67378401	67379550	+	0	NA	intron (NM_181671, intron 1 of 9)	CpG	1694	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
92167	chr17	7707751	7708450	+	0	NA	exon (NM_001406, exon 2 of 5)	exon (NM_001406, exon 2 of 5)	2898	NM_001406	1949		NM_001406	ENSG00000108947	EFNB3	EFL6|EPLG8|LERK8	ephrin B3	protein-coding
154703	chr22	36407771	36408130	+	0	NA	Intergenic	MIRb|SINE|MIR	-19983	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
192549	chr6	25282951	25283580	+	0	NA	intron (NM_001173977, intron 1 of 36)	intron (NM_001173977, intron 1 of 36)	3891	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
190827	chr6	1536801	1537350	+	0	NA	Intergenic	Intergenic	-68456	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
60505	chr13	41335101	41335400	+	0	NA	intron (NM_018527, intron 8 of 9)	MIR|SINE|MIR	-23212	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
206035	chr7	27087701	27088300	+	0	NA	Intergenic	CpG	8000	NM_005522	3198		NM_005522	ENSG00000105991	HOXA1	BSAS|HOX1|HOX1F	homeobox A1	protein-coding
187864	chr5	147946471	147946650	+	0	NA	Intergenic	L1PA3|LINE|L1	-40022	NM_206966	389336		NM_206966	ENSG00000178776	C5orf46	AP-64|SSSP1	chromosome 5 open reading frame 46	protein-coding
141204	chr2	239346151	239346850	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	5304	NR_039948	100616360		NR_039948	ENSG00000264292	MIR2467	mir-2467	microRNA 2467	ncRNA
161125	chr3	38405851	38405950	+	0	NA	intron (NR_146068, intron 15 of 16)	L1PA3|LINE|L1	-47990	NM_001106	93		NM_001106	ENSG00000114739	ACVR2B	ACTRIIB|ActR-IIB|HTX4	activin A receptor type 2B	protein-coding
217416	chr8	28380751	28381350	+	0	NA	intron (NM_018660, intron 1 of 9)	(GT)n|Simple_repeat|Simple_repeat	5410	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
83001	chr16	22192001	22193500	+	0	NA	Intergenic	Intergenic	-13528	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
2726	chr1	10659171	10660200	+	0	NA	intron (NM_017766, intron 6 of 15)	intron (NM_017766, intron 6 of 15)	136961	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
47393	chr12	2795501	2796730	+	0	NA	intron (NM_002014, intron 1 of 9)	intron (NM_002014, intron 1 of 9)	1145	NM_002014	2288		NM_002014	ENSG00000004478	FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	FKBP prolyl isomerase 4	protein-coding
214469	chr7	150365951	150366580	+	0	NA	Intergenic	LTR39|LTR|ERV1	-1831	NM_001362746	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
15915	chr1	151713751	151714150	+	0	NA	intron (NM_007185, intron 2 of 12)	intron (NM_007185, intron 2 of 12)	2853	NM_001172649	11189		NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP Elav-like family member 3	protein-coding
99340	chr17	49853801	49854130	+	0	NA	Intergenic	Intergenic	-5948	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
126424	chr2	27765471	27766350	+	0	NA	Intergenic	Intergenic	-5807	NM_145330	9553		NM_004891	ENSG00000243147	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L|bL33m	mitochondrial ribosomal protein L33	protein-coding
69129	chr14	92534751	92535830	+	0	NA	intron (NM_024832, intron 1 of 9)	L1M5|LINE|L1	21509	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
194023	chr6	31824221	31824900	+	0	NA	Intergenic	AluSz|SINE|Alu	-3178	NM_005346	3304		NM_005346	ENSG00000204388	HSPA1B	HSP70-1|HSP70-1B|HSP70-2|HSP70.1|HSP70.2|HSP72|HSPA1|HSX70	heat shock protein family A (Hsp70) member 1B	protein-coding
1622	chr1	3721351	3721650	+	0	NA	intron (NM_001204185, intron 4 of 12)	intron (NM_001204185, intron 4 of 12)	23454	NM_001204192	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
195425	chr6	36925871	36926030	+	0	NA	3' UTR (NM_001286637, exon 9 of 9)	3' UTR (NM_001286637, exon 9 of 9)	-22313	NM_001199159	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
32825	chr10	109991151	109991250	+	0	NA	intron (NR_038943, intron 2 of 4)	MIRb|SINE|MIR	-5173	NM_001320591	120		NM_001121	ENSG00000148700	ADD3	ADDL|CPSQ3	adducin 3	protein-coding
200695	chr6	137314221	137314500	+	0	NA	Intergenic	Intergenic	-94975	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
108437	chr18	69981471	69981630	+	0	NA	Intergenic	Intergenic	-24751	NM_006566	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
238439	chrX	151370901	151371130	+	0	NA	Intergenic	Intergenic	-25580	NM_001363810	203547		NM_001017980	ENSG00000160131	VMA21	MEAX|XMEA	vacuolar ATPase assembly factor VMA21	protein-coding
58869	chr12	133264601	133265200	+	0	NA	Intergenic	(GGGTCC)n|Simple_repeat|Simple_repeat	-29023	NM_001372060	647589		NM_001191054	ENSG00000227059	ANHX	-	anomalous homeobox	protein-coding
182207	chr5	56836801	56837000	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	21351	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
215365	chr7	157395551	157396050	+	0	NA	intron (NM_058246, intron 8 of 9)	AluSz|SINE|Alu	58796	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
75029	chr15	64100771	64101650	+	0	NA	intron (NM_001242933, intron 1 of 14)	L1MB2|LINE|L1	5228	NM_003099	6642		NM_003099	ENSG00000028528	SNX1	HsT17379|VPS5	sorting nexin 1	protein-coding
71021	chr14	104768051	104769600	+	0	NA	TTS (NM_005163)	TTS (NM_005163)	15678	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
218122	chr8	41542621	41543130	+	0	NA	3' UTR (NM_032336, exon 8 of 8)	3' UTR (NM_032336, exon 8 of 8)	13614	NM_032336	84296		NM_032336	ENSG00000147536	GINS4	SLD5	GINS complex subunit 4	protein-coding
180086	chr5	1114321	1114780	+	0	NA	Intergenic	Intergenic	-2487	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
4777	chr1	23550471	23550830	+	0	NA	Intergenic	MIRb|SINE|MIR	8851	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
190545	chr5	180782801	180783000	+	0	NA	Intergenic	MER4A|LTR|ERV1	19906	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
221325	chr8	123071371	123071530	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1257	NM_001363152	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
88573	chr16	85561901	85562900	+	0	NA	Intergenic	Intergenic	-49009	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
184503	chr5	100890031	100890150	+	0	NA	intron (NM_175052, intron 2 of 2)	intron (NM_175052, intron 2 of 2)	13192	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
15727	chr1	151052951	151054030	+	0	NA	intron (NM_020239, intron 4 of 4)	AluSz|SINE|Alu	5739	NM_017860	54964		NM_017860	ENSG00000143443	C1orf56	MENT	chromosome 1 open reading frame 56	protein-coding
124726	chr2	4158251	4158350	+	0	NA	Intergenic	L1PA3|LINE|L1	184139	NR_136322	105373394		NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
95941	chr17	38961521	38961930	+	0	NA	intron (NM_001008777, intron 3 of 10)	intron (NM_001008777, intron 3 of 10)	5678	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
91949	chr17	7353901	7354100	+	0	NA	3' UTR (NM_001002914, exon 1 of 1)	3' UTR (NM_001002914, exon 1 of 1)	-1156	NM_001320435	339168		NM_198154	ENSG00000182896	TMEM95	UNQ9390	transmembrane protein 95	protein-coding
62606	chr13	100484751	100485050	+	0	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	-3885	NR_047686	100885777		NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
179659	chr4	189880951	189881250	+	0	NA	promoter-TSS (NR_132380)	promoter-TSS (NR_132380)	-415	NR_132380	105377617		NR_132380	ENSG00000250666	LINC01596	-	long intergenic non-protein coding RNA 1596	ncRNA
197776	chr6	87644801	87645780	+	0	NA	intron (NM_181837, intron 13 of 19)	L2c|LINE|L2	55155	NM_012381	23595		NM_012381	ENSG00000135336	ORC3	LAT|LATHEO|ORC3L	origin recognition complex subunit 3	protein-coding
16053	chr1	152912951	152913050	+	0	NA	Intergenic	L2|LINE|L2	4455	NM_005547	3713		NM_005547	ENSG00000163207	IVL	-	involucrin	protein-coding
165551	chr3	101414921	101415380	+	0	NA	intron (NM_001282801, intron 4 of 22)	intron (NM_001282801, intron 4 of 22)	-94575	NM_016247	50939		NM_016247	ENSG00000081148	IMPG2	IPM200|RP56|SPACRCAN|VMD5	interphotoreceptor matrix proteoglycan 2	protein-coding
133823	chr2	127859421	127860380	+	0	NA	Intergenic	Intergenic	-1745	NM_004805	5433		NM_004805	ENSG00000144231	POLR2D	HSRBP4|HSRPB4|RBP4|RPB16|RPB4	RNA polymerase II subunit D	protein-coding
23657	chr1	231043271	231043850	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-3306	NM_198552	375061		NM_198552	ENSG00000182118	FAM89A	C1orf153	family with sequence similarity 89 member A	protein-coding
205114	chr7	6854171	6854330	+	0	NA	Intergenic	Intergenic	-27975	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
113871	chr19	10663851	10664150	+	0	NA	intron (NM_153464, intron 1 of 17)	L1MC5|LINE|L1	9654	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
14685	chr1	145856421	145857350	+	0	NA	exon (NM_006099, exon 2 of 14)	exon (NM_006099, exon 2 of 14)	2196	NM_006099	10401		NM_006099	ENSG00000131788	PIAS3	ZMIZ5	protein inhibitor of activated STAT 3	protein-coding
19939	chr1	184747451	184747750	+	0	NA	intron (NM_001319960, intron 2 of 20)	intron (NM_001319960, intron 2 of 20)	7258	NM_001319960	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
10351	chr1	64930451	64930750	+	0	NA	intron (NM_001321852, intron 1 of 24)	L1PA7|LINE|L1	35949	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
158387	chr22	50503501	50504680	+	0	NA	intron (NM_033200, intron 12 of 13)	intron (NM_033200, intron 12 of 13)	3612	NM_033200	91289		NM_033200	ENSG00000100258	LMF2	TMEM112B|TMEM153	lipase maturation factor 2	protein-coding
162274	chr3	47324151	47325000	+	0	NA	intron (NM_025010, intron 3 of 9)	AluJr|SINE|Alu	41631	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
87191	chr16	69392301	69392500	+	0	NA	Intergenic	MIRb|SINE|MIR	-6393	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
134976	chr2	152407371	152407530	+	0	NA	intron (NM_052905, intron 1 of 25)	intron (NM_052905, intron 1 of 25)	72276	NM_052905	114793		NM_052905	ENSG00000157827	FMNL2	FHOD2	formin like 2	protein-coding
146958	chr20	52405401	52406150	+	0	NA	Intergenic	L1MB2|LINE|L1	-213790	NM_199427	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
171041	chr3	195204501	195204700	+	0	NA	intron (NM_001308069, intron 2 of 3)	intron (NM_001308069, intron 2 of 3)	43320	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
220058	chr8	93753951	93755360	+	0	NA	promoter-TSS (NR_024522)	promoter-TSS (NR_024522)	-189	NM_001142301	91147		NM_153704	ENSG00000164953	TMEM67	JBTS6|MECKELIN|MKS3|NPHP11|TNEM67	transmembrane protein 67	protein-coding
179909	chr5	688371	688530	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	4902	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
24309	chr1	236794751	236796250	+	0	NA	5' UTR (NM_001291940, exon 1 of 32)	5' UTR (NM_001291940, exon 1 of 32)	208	NM_000254	4548		NM_000254	ENSG00000116984	MTR	HMAG|MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
108896	chr18	79421071	79421630	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	21051	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
61404	chr13	51647801	51648200	+	0	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	63538	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
87898	chr16	78796271	78796700	+	0	NA	intron (NM_016373, intron 8 of 8)	MLT1J2|LTR|ERVL-MaLR	696831	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
127073	chr2	37493851	37493950	+	0	NA	Intergenic	L1PA2|LINE|L1	149270	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
111397	chr19	3759701	3760150	+	0	NA	exon (NM_004886, exon 2 of 11)	exon (NM_004886, exon 2 of 11)	1767	NM_004886	9546		NM_004886	ENSG00000011132	APBA3	MGC:15815|X11L2|mint3	amyloid beta precursor protein binding family A member 3	protein-coding
28445	chr10	48805851	48806350	+	0	NA	intron (NM_001370153, intron 27 of 28)	intron (NM_001370153, intron 27 of 28)	119187	NM_001006939	474354		NM_001006939	ENSG00000165383	LRRC18	UNQ933|UNQ9338|VKGE9338	leucine rich repeat containing 18	protein-coding
19288	chr1	172818901	172819800	+	0	NA	Intergenic	Intergenic	160247	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
151317	chr21	45554601	45556300	+	0	NA	intron (NM_001352511, intron 1 of 5)	G-rich|Low_complexity|Low_complexity	7575	NM_001352511	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
192988	chr6	28104471	28105450	+	0	NA	Intergenic	CpG	14153	NR_024063	221584		NR_024063		ZSCAN12P1	ZNF187p1|ZNF305P1|ZNF96L1|ZNF96P1|ZSCAN12L1|dJ313I6.7	zinc finger and SCAN domain containing 12 pseudogene 1	pseudo
135183	chr2	158015421	158015680	+	0	NA	intron (NM_001135098, intron 1 of 8)	L1MB2|LINE|L1	20371	NM_001135098	151531		NM_173355	ENSG00000007001	UPP2	UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
177457	chr4	113636571	113637530	+	0	NA	intron (NM_172129, intron 3 of 17)	L2a|LINE|L2	124688	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
95778	chr17	38697121	38697900	+	0	NA	Intergenic	L2|LINE|L2	-3634	NR_158157	105371763		NR_158157		LOC105371763	-	uncharacterized LOC105371763	ncRNA
146608	chr20	50148901	50149100	+	0	NA	intron (NM_199129, intron 1 of 5)	AluJr|SINE|Alu	4723	NM_001162505	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
210338	chr7	99503721	99505440	+	0	NA	promoter-TSS (NM_014569)	promoter-TSS (NM_014569)	-82	NM_001318082	23660		NM_014569	ENSG00000196652	ZKSCAN5	ZFP-95|ZFP95|ZNF914|ZSCAN37	zinc finger with KRAB and SCAN domains 5	protein-coding
36115	chr11	3091571	3092550	+	0	NA	intron (NM_145638, intron 18 of 20)	MIRc|SINE|MIR	-34637	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
138108	chr2	202277051	202277500	+	0	NA	promoter-TSS (NR_145774)	promoter-TSS (NR_145774)	-838	NR_145774	109616995		NR_145774	ENSG00000212309	SNORD70B	-	small nucleolar RNA, C/D box 70B	snoRNA
109185	chr19	362201	362600	+	0	NA	exon (NM_199202, exon 7 of 7)	exon (NM_199202, exon 7 of 7)	13626	NM_199202	51298		NM_016585	ENSG00000105549	SPMAP2	CT56|THEG|THEG1	sperm microtubule associated protein 2	protein-coding
42220	chr11	68040101	68041300	+	0	NA	intron (NM_001351059, intron 1 of 18)	intron (NM_001351059, intron 1 of 18)	1675	NM_001351059	10312		NM_006019	ENSG00000110719	TCIRG1	ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3	T cell immune regulator 1, ATPase H+ transporting V0 subunit a3	protein-coding
234924	chrX	37753751	37754100	+	0	NA	Intergenic	Intergenic	-26134	NM_000397	1536		NM_000397	ENSG00000165168	CYBB	AMCBX2|CGD|CGDX|GP91-1|GP91-PHOX|GP91PHOX|IMD34|NOX2|p91-PHOX	cytochrome b-245 beta chain	protein-coding
133241	chr2	113250171	113250600	+	0	NA	intron (NM_013952, intron 2 of 11)	intron (NM_013952, intron 2 of 11)	14116	NR_015377	654433		NR_015377	ENSG00000189223	PAX8-AS1	-	PAX8 antisense RNA 1	ncRNA
215607	chr7	159094551	159094650	+	0	NA	intron (NR_130758, intron 4 of 12)	intron (NR_130758, intron 4 of 12)	2604	NM_001308259	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
113377	chr19	8801421	8801500	+	0	NA	Intergenic	L1PA3|LINE|L1	20603	NM_001304350	148156		NM_144693	ENSG00000167785	ZNF558	-	zinc finger protein 558	protein-coding
66079	chr14	59154201	59154650	+	0	NA	Intergenic	Intergenic	-34242	NM_001270520	23002		NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
46385	chr11	126285971	126286630	+	0	NA	intron (NM_001318776, intron 1 of 3)	AluSz6|SINE|Alu	3213	NM_001039661	114609		NM_052887	ENSG00000150455	TIRAP	BACTS1|Mal|MyD88-2|wyatt	TIR domain containing adaptor protein	protein-coding
158881	chr3	9890151	9891930	+	0	NA	intron (NM_032492, intron 1 of 1)	CpG	430	NM_001363890	84522		NM_032492	ENSG00000171135	JAGN1	GL009|SCN6	jagunal homolog 1	protein-coding
156399	chr22	41117421	41117680	+	0	NA	exon (NM_001429, exon 2 of 31)	exon (NM_001429, exon 2 of 31)	24958	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
116319	chr19	17806871	17807330	+	0	NA	intron (NM_014256, intron 1 of 2)	intron (NM_014256, intron 1 of 2)	11962	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
41557	chr11	66321671	66321900	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-4741	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
71856	chr15	22257851	22258500	+	0	NA	promoter-TSS (NR_033735)	promoter-TSS (NR_033735)	-439	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
173433	chr4	8219721	8220330	+	0	NA	intron (NM_001318480, intron 9 of 17)	MLT1C|LTR|ERVL-MaLR	20735	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
24107	chr1	235506501	235507380	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2488	NM_152490	148789		NM_152490	ENSG00000162885	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
93916	chr17	21289371	21289530	+	0	NA	intron (NM_002756, intron 1 of 11)	intron (NM_002756, intron 1 of 11)	1414	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
53569	chr12	67650571	67650990	+	0	NA	intron (NM_006482, intron 2 of 2)	intron (NM_006482, intron 2 of 2)	2035	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
237118	chrX	106027251	106027350	+	0	NA	Intergenic	AluY|SINE|Alu	11427	NM_000354	6906		NM_000354	ENSG00000123561	SERPINA7	TBG|TBGQTL	serpin family A member 7	protein-coding
192576	chr6	25874871	25875230	+	0	NA	promoter-TSS (NM_006632)	promoter-TSS (NM_006632)	-807	NM_006632	10786		NM_006632	ENSG00000124564	SLC17A3	GOUT4|NPT4|UAQTL4	solute carrier family 17 member 3	protein-coding
125980	chr2	25283751	25284600	+	0	NA	intron (NR_135490, intron 3 of 23)	intron (NR_135490, intron 3 of 23)	-31860	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
141810	chr20	325101	327900	+	0	NA	exon (NM_006943, exon 1 of 1)	exon (NM_006943, exon 1 of 1)	929	NM_006943	6666		NM_006943	ENSG00000177732	SOX12	SOX22	SRY-box transcription factor 12	protein-coding
111891	chr19	4669621	4671280	+	0	NA	promoter-TSS (NM_019107)	promoter-TSS (NM_019107)	-108	NM_019107	56005		NM_019107	ENSG00000074842	MYDGF	C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20	myeloid derived growth factor	protein-coding
151811	chr22	18234551	18235100	+	0	NA	Intergenic	Intergenic	-28916	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
95258	chr17	35467701	35468630	+	0	NA	Intergenic	AluJb|SINE|Alu	-19399	NM_144682	146857		NM_144682	ENSG00000154760	SLFN13	SLFN10|hSLFN13	schlafen family member 13	protein-coding
53738	chr12	68637201	68638250	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	-10350	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
83873	chr16	28928171	28928730	+	0	NA	Intergenic	AluSq|SINE|Alu	-3212	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
215957	chr8	8471071	8471230	+	0	NA	Intergenic	L1HS|LINE|L1	-84711	NR_163138	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
67489	chr14	70921071	70921930	+	0	NA	intron (NM_014982, intron 1 of 35)	intron (NM_014982, intron 1 of 35)	14041	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
150633	chr21	43394551	43394850	+	0	NA	Intergenic	Intergenic	-32351	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
167968	chr3	136692201	136692600	+	0	NA	intron (NM_005862, intron 1 of 33)	AluSx1|SINE|Alu	59978	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
7935	chr1	37521201	37521600	+	0	NA	Intergenic	L1MEd|LINE|L1	-6634	NR_073090	64769		NM_022756	ENSG00000163875	MEAF6	C1orf149|CENP-28|EAF6|NY-SAR-91	MYST/Esa1 associated factor 6	protein-coding
104222	chr17	80647921	80648180	+	0	NA	intron (NM_020761, intron 3 of 33)	intron (NM_020761, intron 3 of 33)	103212	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
2247	chr1	8881451	8881980	+	0	NA	Intergenic	AluJo|SINE|Alu	2880	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
58671	chr12	132536671	132537630	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	31744	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
148880	chr21	8450701	8451300	+	0	NA	Intergenic	CpG	9854	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
134588	chr2	144266871	144267580	+	0	NA	intron (NM_001376309, intron 1 of 12)	intron (NM_001376309, intron 1 of 12)	-18526	NR_148872	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
147314	chr20	57708801	57709150	+	0	NA	intron (NM_199171, intron 1 of 3)	CpG	1040	NM_020182	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
16786	chr1	155534671	155535330	+	0	NA	intron (NM_018489, intron 1 of 27)	AluSq2|SINE|Alu	-27042	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
47023	chr12	384601	385200	+	0	NA	intron (NM_001042603, intron 2 of 27)	intron (NM_001042603, intron 2 of 27)	4420	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
151536	chr21	46489571	46490130	+	0	NA	intron (NM_206891, intron 2 of 19)	intron (NM_206891, intron 2 of 19)	27379	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
224673	chr9	21110851	21111200	+	0	NA	Intergenic	Intergenic	30876	NM_002177	3467		NM_002177	ENSG00000177047	IFNW1	-	interferon omega 1	protein-coding
236886	chrX	82742171	82742330	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	-766040	NM_000307	5456		NM_000307	ENSG00000196767	POU3F4	BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9	POU class 3 homeobox 4	protein-coding
189090	chr5	170292421	170292800	+	0	NA	intron (NM_005565, intron 2 of 20)	intron (NM_005565, intron 2 of 20)	5167	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
140185	chr2	231667551	231667650	+	0	NA	Intergenic	Intergenic	-40925	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
82927	chr16	21829751	21830280	+	0	NA	Intergenic	AluSc5|SINE|Alu	-9530	NM_001301064	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
181113	chr5	37208621	37209330	+	0	NA	intron (NM_001384732, intron 16 of 52)	CpG	-40071	NR_134263	105374727		NR_134263	ENSG00000286193	CPLANE1-AS1	-	CPLANE1 antisense RNA 1	ncRNA
127346	chr2	39120131	39121980	+	0	NA	promoter-TSS (NM_001382395)	promoter-TSS (NM_001382395)	-4	NM_005633	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
226476	chr9	71750571	71750980	+	0	NA	intron (NM_001135820, intron 1 of 22)	AluJo|SINE|Alu	17738	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
202970	chr6	161264851	161265430	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	8921	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
152864	chr22	22348121	22348380	+	0	NA	Intergenic	Intergenic	50152	NR_027293	96610		NM_080926		BMS1P20	IGL|IGLV|IGLV1	BMS1 pseudogene 20	pseudo
36534	chr11	6526471	6526780	+	0	NA	intron (NM_144666, intron 10 of 42)	HAL1M8|LINE|L1	29345	NM_173589	144132		NM_144666	ENSG00000179532	DNHD1	C11orf47|CCDC35|DHCD1|DNHD1L|SPGF65	dynein heavy chain domain 1	protein-coding
23912	chr1	235011021	235012680	+	0	NA	Intergenic	Intergenic	-47851	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
102018	chr17	74842571	74843480	+	0	NA	non-coding (NR_103735, exon 13 of 13)	non-coding (NR_103735, exon 13 of 13)	16859	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
224774	chr9	22008371	22009000	+	0	NA	3' UTR (NM_078487, exon 1 of 2)	3' UTR (NM_078487, exon 1 of 2)	620	NM_004936	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
150734	chr21	43753151	43753450	+	0	NA	intron (NM_001331030, intron 7 of 9)	intron (NM_001331030, intron 7 of 9)	11814	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
185108	chr5	119273071	119273950	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	4751	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
235260	chrX	41716321	41716580	+	0	NA	intron (NM_001126055, intron 5 of 24)	MER21-int|LTR|ERVL	-7731	NM_080817	27197		NM_080817	ENSG00000171657	GPR82	-	G protein-coupled receptor 82	protein-coding
188183	chr5	150526951	150527450	+	0	NA	intron (NM_001543, intron 2 of 14)	MIRb|SINE|MIR	19069	NM_001543	3340		NM_001543	ENSG00000070614	NDST1	HSST|MRT46|NST1	N-deacetylase and N-sulfotransferase 1	protein-coding
69327	chr14	93329751	93330050	+	0	NA	intron (NM_018167, intron 1 of 3).2	L1MB3|LINE|L1	3136	NM_018167	55727		NM_018167	ENSG00000011114	BTBD7	FUP1	BTB domain containing 7	protein-coding
4725	chr1	23341021	23341980	+	0	NA	intron (NM_001102398, intron 1 of 10).2	intron (NM_001102398, intron 1 of 10).2	2784	NM_001297622	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
142189	chr20	2902051	2902150	+	0	NA	intron (NM_001385311, intron 1 of 20)	AluSx|SINE|Alu	28619	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
18227	chr1	161033751	161034050	+	0	NA	Intergenic	AluJr|SINE|Alu	5064	NM_001113207	100131187		NM_001113205	ENSG00000215845	TSTD1	KAT|TST	thiosulfate sulfurtransferase like domain containing 1	protein-coding
82715	chr16	20879021	20879530	+	0	NA	intron (NM_173475, intron 1 of 2)	intron (NM_173475, intron 1 of 2)	-20607	NM_001369631	57149		NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
167640	chr3	129603771	129604280	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	2651	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
119067	chr19	39130901	39131100	+	0	NA	intron (NM_001014834, intron 1 of 7)	MIR|SINE|MIR	5214	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
94080	chr17	27544251	27544900	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	72611	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
65524	chr14	51910451	51910750	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	7971	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
216289	chr8	12563251	12563350	+	0	NA	intron (NR_047662, intron 8 of 8)	AluSg|SINE|Alu	102311	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
82674	chr16	19707721	19707980	+	0	NA	intron (NM_001348529, intron 5 of 5)	intron (NM_001348529, intron 5 of 5)	-8606	NR_130967	124152		NM_153208	ENSG00000174628	IQCK	-	IQ motif containing K	protein-coding
207481	chr7	44636301	44636950	+	0	NA	intron (NM_001363523, intron 2 of 23)	intron (NM_001363523, intron 2 of 23)	29998	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
12629	chr1	109134401	109134600	+	0	NA	intron (NM_001284352, intron 1 of 20)	intron (NM_001284352, intron 1 of 20)	20385	NM_001267048	57535		NM_020775	ENSG00000116299	ELAPOR1	EIG121|KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein-coding
210461	chr7	100129601	100130130	+	0	NA	Intergenic	AluSz6|SINE|Alu	2898	NM_203397	255374		NM_203397	ENSG00000214309	MBLAC1	-	metallo-beta-lactamase domain containing 1	protein-coding
143427	chr20	29874001	29874350	+	0	NA	Intergenic	5S|rRNA|rRNA	-6209	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
180534	chr5	14592521	14592800	+	0	NA	intron (NM_019018, intron 1 of 7)	intron (NM_019018, intron 1 of 7)	10868	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
118406	chr19	35752651	35752750	+	0	NA	intron (NM_001369780, intron 3 of 8)	intron (NM_001369780, intron 3 of 8)	3886	NM_001369780	55957		NM_019104	ENSG00000267796	LIN37	F25965|ZK418.4|lin-37	lin-37 DREAM MuvB core complex component	protein-coding
3301	chr1	15348321	15348780	+	0	NA	intron (NM_052929, intron 17 of 30)	intron (NM_052929, intron 17 of 30)	-4667	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
26200	chr10	14555721	14555980	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	330	NM_001320738	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
19106	chr1	171491221	171491580	+	0	NA	intron (NM_015172, intron 1 of 33)	intron (NM_015172, intron 1 of 33)	5870	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
204947	chr7	6341551	6341850	+	0	NA	intron (NM_001037163, intron 1 of 1)	AluYh3|SINE|Alu	7267	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
44034	chr11	95138471	95138630	+	0	NA	Intergenic	Intergenic	-11989	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
134949	chr2	151704201	151704450	+	0	NA	intron (NM_001164508, intron 13 of 181)	L1PA2|LINE|L1	30151	NM_001271208	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
139681	chr2	227320371	227320930	+	0	NA	intron (NR_102371, intron 1 of 13)	LTR12C|LTR|ERV1	4514	NR_102371	654841		NR_102371	ENSG00000236432	MFF-DT	-	MFF divergent transcript	ncRNA
157207	chr22	43152061	43153080	+	0	NA	intron (NM_001256530, intron 1 of 3)	intron (NM_001256530, intron 1 of 3)	635	NM_001256530	706		NM_000714	ENSG00000100300	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|TSPO1|mDRC|pk18	translocator protein	protein-coding
175916	chr4	80198971	80199750	+	0	NA	intron (NM_020226, intron 7 of 9)	intron (NM_020226, intron 7 of 9)	1857	NM_001099403	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
196159	chr6	42547501	42548330	+	0	NA	Intergenic	Intergenic	-16107	NM_015255	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
92369	chr17	8217801	8218000	+	0	NA	Intergenic	AluY|SINE|Alu	6143	NR_026951	284029		NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324|RNA00324|TP53LC03	long intergenic non-protein coding RNA 324	ncRNA
210790	chr7	100825671	100826330	+	0	NA	promoter-TSS (NM_001363494)	promoter-TSS (NM_001363494)	-869	NM_001363494	56996		NM_020246	ENSG00000146828	SLC12A9	CCC6|CIP1|WO3.3|hCCC6	solute carrier family 12 member 9	protein-coding
43378	chr11	77040451	77040550	+	0	NA	exon (NM_138706, exon 2 of 2)	exon (NM_138706, exon 2 of 2)	6102	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
221541	chr8	124721871	124722030	+	0	NA	intron (NM_001363300, intron 1 of 12)	intron (NM_001363300, intron 1 of 12)	6523	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
170558	chr3	186791101	186792130	+	0	NA	intron (NM_002916, intron 8 of 10)	L2a|LINE|L2	4002	NR_002588	619568		NR_002588	ENSG00000263776	SNORA4	ACA4	small nucleolar RNA, H/ACA box 4	snoRNA
197749	chr6	87180301	87180700	+	0	NA	intron (NM_015021, intron 1 of 7)	LTR41B|LTR|ERVL	24935	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
190321	chr5	179617071	179617380	+	0	NA	intron (NM_001364248, intron 9 of 12).2	intron (NM_001364248, intron 9 of 12).2	6176	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
63812	chr14	21442901	21443100	+	0	NA	intron (NM_001170629, intron 1 of 37)	MER102c|DNA|hAT-Charlie	-5725	NM_020920	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
64662	chr14	31562451	31562550	+	0	NA	intron (NM_025152, intron 2 of 10)	MIRb|SINE|MIR	1096	NR_120408	80224		NM_025152	ENSG00000151413	NUBPL	C14orf127|IND1|MC1DN21|huInd1	NUBP iron-sulfur cluster assembly factor, mitochondrial	protein-coding
203021	chr6	163461621	163461900	+	0	NA	intron (NM_206854, intron 2 of 6)	intron (NM_206854, intron 2 of 6)	47042	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
84441	chr16	30399601	30401280	+	0	NA	TTS (NM_152652)	TTS (NM_152652)	5020	NM_001324494	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
113520	chr19	10114971	10115530	+	0	NA	3' UTR (NM_002566, exon 2 of 2)	3' UTR (NM_002566, exon 2 of 2)	3557	NM_002566	5032		NM_002566	ENSG00000244165	P2RY11	P2Y11	purinergic receptor P2Y11	protein-coding
81476	chr16	8918901	8919100	+	0	NA	intron (NR_135826, intron 6 of 30)	intron (NR_135826, intron 6 of 30)	17639	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
147087	chr20	53840571	53841080	+	0	NA	Intergenic	Intergenic	34884	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
90980	chr17	2704771	2704930	+	0	NA	intron (NM_001366662, intron 1 of 25)	intron (NM_001366662, intron 1 of 25)	6914	NM_001366661	23277		NM_015229	ENSG00000132361	CLUH	CLU1	clustered mitochondria homolog	protein-coding
98278	chr17	46211521	46212200	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	13507	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
236507	chrX	71991771	71991930	+	0	NA	intron (NM_001013627, intron 1 of 7)	(TC)n|Simple_repeat|Simple_repeat	-52559	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
106509	chr18	21049301	21049530	+	0	NA	intron (NM_005406, intron 3 of 32)	intron (NM_005406, intron 3 of 32)	62398	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
156093	chr22	40061371	40061530	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSq2|SINE|Alu	16633	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
116013	chr19	17124871	17126950	+	0	NA	intron (NM_004145, intron 2 of 39)	intron (NM_004145, intron 2 of 39)	33675	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
234199	chrX	12948071	12948830	+	0	NA	Intergenic	MIRb|SINE|MIR	-5150	NR_030727	349408		NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
38908	chr11	47418101	47418300	+	0	NA	TTS (NM_002804)	TTS (NM_002804)	8239	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
104197	chr17	80469151	80469330	+	0	NA	3' UTR (NM_002522, exon 5 of 5)	3' UTR (NM_002522, exon 5 of 5)	7367	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
209711	chr7	86914521	86914780	+	0	NA	intron (NM_001142749, intron 13 of 21)	intron (NM_001142749, intron 13 of 21)	51249	NM_152748	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
58520	chr12	132191701	132192230	+	0	NA	Intergenic	Intergenic	-2270	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
43667	chr11	85755701	85756900	+	0	NA	intron (NM_001365827, intron 1 of 17)	intron (NM_001365827, intron 1 of 17)	1769	NM_001162951	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
74516	chr15	60394351	60395000	+	0	NA	intron (NM_001136015, intron 1 of 13)	AluSx1|SINE|Alu	3311	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
181736	chr5	50694001	50694230	+	0	NA	intron (NM_024615, intron 2 of 25)	L1ME4a|LINE|L1	26701	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
34889	chr11	376321	376580	+	0	NA	exon (NM_178537, exon 14 of 20)	exon (NM_178537, exon 14 of 20)	6951	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
44817	chr11	113876651	113876750	+	0	NA	Intergenic	Intergenic	-1128	NM_001346252	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
51659	chr12	53050971	53052880	+	0	NA	exon (NM_015319, exon 2 of 29)	exon (NM_015319, exon 2 of 29)	1860	NM_170754	23371		NM_015319	ENSG00000111077	TNS2	C1-TEN|C1TEN|TENC1	tensin 2	protein-coding
55651	chr12	107317101	107318750	+	0	NA	promoter-TSS (NM_001347943)	promoter-TSS (NM_001347943)	-509	NM_001347943	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
40934	chr11	65279751	65280050	+	0	NA	intron (NM_002689, intron 7 of 17)	intron (NM_002689, intron 7 of 17)	17938	NM_002689	23649		NM_002689	ENSG00000014138	POLA2	-	DNA polymerase alpha 2, accessory subunit	protein-coding
178844	chr4	153755071	153755430	+	0	NA	intron (NM_173662, intron 1 of 8)	HAL1|LINE|L1	4774	NM_173662	285533		NM_173662	ENSG00000145428	RNF175	-	ring finger protein 175	protein-coding
129502	chr2	69630171	69630530	+	0	NA	intron (NM_001371577, intron 2 of 14)	G-rich|Low_complexity|Low_complexity	13388	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
219264	chr8	67337601	67337800	+	0	NA	intron (NM_006421, intron 1 of 38)	L2a|LINE|L2	6081	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
75399	chr15	65760271	65760630	+	0	NA	intron (NM_001376920, intron 1 of 30)	AluSz|SINE|Alu	31843	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
71391	chr14	105518201	105518400	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-8283	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
73453	chr15	43370451	43371880	+	0	NA	promoter-TSS (NM_001286414)	promoter-TSS (NM_001286414)	64	NM_001286414	27229		NM_014444	ENSG00000137822	TUBGCP4	76P|GCP-4|GCP4|Grip76|MCCRP3	tubulin gamma complex component 4	protein-coding
32599	chr10	103584001	103585400	+	0	NA	exon (NM_004210, exon 4 of 6)	exon (NM_004210, exon 4 of 6)	-67258	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
234042	chrX	3880851	3882600	+	0	NA	intron (NR_146581, intron 1 of 3)	CpG	588	NR_146578	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
167996	chr3	136750051	136750580	+	0	NA	intron (NM_005862, intron 1 of 33)	intron (NM_005862, intron 1 of 33)	2063	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
172626	chr4	2524221	2525050	+	0	NA	Intergenic	AluY|SINE|Alu	-10740	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
63942	chr14	22071001	22071780	+	0	NA	Intergenic	Intergenic	361363	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
37303	chr11	14748721	14748980	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	105046	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
174448	chr4	39705401	39705600	+	0	NA	intron (NM_001111113, intron 1 of 4)	intron (NM_001111113, intron 1 of 4)	7364	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
103273	chr17	77772171	77773230	+	0	NA	Intergenic	Intergenic	-44141	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
219950	chr8	89253421	89254100	+	0	NA	Intergenic	L1PA16|LINE|L1	503951	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
236213	chrX	65693051	65693350	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	25546	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
223622	chr8	144322251	144322350	+	0	NA	intron (NM_012079, intron 1 of 16)	intron (NM_012079, intron 1 of 16)	4552	NM_012079	8694		NM_012079	ENSG00000185000	DGAT1	ARAT|ARGP1|DGAT|DIAR7	diacylglycerol O-acyltransferase 1	protein-coding
187136	chr5	140463971	140464130	+	0	NA	intron (NM_001197030, intron 9 of 9)	AluSx|SINE|Alu	62217	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
140269	chr2	232317951	232318050	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-60751	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
185097	chr5	119079301	119079830	+	0	NA	intron (NM_001290321, intron 1 of 43)	intron (NM_001290321, intron 1 of 43)	8478	NM_001290322	1657		NM_005509	ENSG00000172869	DMXL1	-	Dmx like 1	protein-coding
146481	chr20	49810321	49810580	+	0	NA	Intergenic	Intergenic	-2263	NM_001260491	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
236982	chrX	101409701	101410050	+	0	NA	intron (NM_019597, intron 1 of 1)	L1ME3G|LINE|L1	1653	NM_019597	3188		NM_019597	ENSG00000126945	HNRNPH2	FTP3|HNRPH'|HNRPH2|MRXSB|NRPH2|hnRNPH'	heterogeneous nuclear ribonucleoprotein H2	protein-coding
119106	chr19	39328001	39328680	+	0	NA	TTS (NM_001301008)	TTS (NM_001301008)	-7477	NM_020862	57622		NM_020862	ENSG00000128011	LRFN1	SALM2	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
27130	chr10	28242601	28243000	+	0	NA	intron (NM_001318170, intron 1 of 16)	Charlie1a|DNA|hAT-Charlie	39323	NM_173496	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
40047	chr11	62712501	62713230	+	0	NA	3' UTR (NM_001079559, exon 14 of 14)	3' UTR (NM_001079559, exon 14 of 14)	-3246	NR_037949								
219600	chr8	80029521	80030880	+	0	NA	promoter-TSS (NM_014018)	promoter-TSS (NM_014018)	59	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
114242	chr19	11503651	11504000	+	0	NA	intron (NM_138783, intron 1 of 8)	AluJb|SINE|Alu	2014	NM_138783	115950		NM_138783	ENSG00000161914	ZNF653	E430039K05Rik|ZIP67	zinc finger protein 653	protein-coding
193168	chr6	29705671	29706650	+	0	NA	Intergenic	Intergenic	-17180	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
156480	chr22	41271421	41272300	+	0	NA	intron (NM_001278651, intron 4 of 16)	intron (NM_001278651, intron 4 of 16)	14327	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
106284	chr18	12705401	12705600	+	0	NA	intron (NM_020232, intron 1 of 6)	L2|LINE|L2	2458	NM_020232	56984		NM_020232	ENSG00000128789	PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|PRAAS4|TNFSF5IP1	proteasome assembly chaperone 2	protein-coding
19433	chr1	174320871	174321030	+	0	NA	intron (NM_001366447, intron 11 of 20)	MER11B|LTR|ERVK	45850	NM_001366449	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
84240	chr16	29997851	29998330	+	0	NA	intron (NR_130786, intron 3 of 7)	intron (NR_130786, intron 3 of 7)	1849	NR_130787	283899		NM_173618	ENSG00000169592	INO80E	CCDC95	INO80 complex subunit E	protein-coding
178026	chr4	139455251	139455680	+	0	NA	intron (NM_031296, intron 1 of 1)	intron (NM_031296, intron 1 of 1)	1344	NM_031296	83452		NM_031296	ENSG00000172007	RAB33B	SMC2	RAB33B, member RAS oncogene family	protein-coding
9067	chr1	44831751	44831930	+	0	NA	intron (NM_001166292, intron 4 of 22)	intron (NM_001166292, intron 4 of 22)	11104	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
129987	chr2	74025071	74025430	+	0	NA	intron (NM_001366022, intron 2 of 10)	L1MC4|LINE|L1	22558	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
139064	chr2	218853871	218854650	+	0	NA	Intergenic	L2b|LINE|L2	-5545	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
192451	chr6	24906151	24906830	+	0	NA	intron (NM_001286446, intron 1 of 13)	MER94|DNA|hAT-Blackjack	4244	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
164870	chr3	71074901	71075100	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-10076	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
153356	chr22	24425071	24425400	+	0	NA	intron (NM_001278500, intron 1 of 2)	intron (NM_001278500, intron 1 of 2)	1638	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
48064	chr12	7109001	7109980	+	0	NA	promoter-TSS (NM_016546)	promoter-TSS (NM_016546)	-276	NM_001297640	51279		NM_016546	ENSG00000139178	C1RL	C1RL1|C1RLP|C1r-LP|CLSPa	complement C1r subcomponent like	protein-coding
164345	chr3	58018121	58018380	+	0	NA	intron (NM_001164319, intron 1 of 44)	LTR56|LTR|ERV1	9828	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
191092	chr6	3751121	3751500	+	0	NA	exon (NM_183373, exon 1 of 5)	exon (NM_183373, exon 1 of 5)	403	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
91443	chr17	4782501	4783300	+	0	NA	exon (NM_003963, exon 4 of 5)	exon (NM_003963, exon 4 of 5)	3464	NM_001144940	284013		NM_182566	ENSG00000182853	VMO1	ERGA6350|PRO21055	vitelline membrane outer layer 1 homolog	protein-coding
26401	chr10	17008051	17008350	+	0	NA	intron (NM_001081, intron 28 of 66)	intron (NM_001081, intron 28 of 66)	121611	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
136089	chr2	173359201	173360130	+	0	NA	intron (NM_031942, intron 3 of 9)	intron (NM_031942, intron 3 of 9)	4793	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
26895	chr10	26439401	26440480	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	1599	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
206087	chr7	27190051	27190630	+	0	NA	Intergenic	Intergenic	4932	NR_002795	221883		NR_002795	ENSG00000240990	HOXA11-AS	HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|LncHOXA11|NCRNA00076	HOXA11 antisense RNA	ncRNA
68632	chr14	89723271	89724000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-104470	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
76735	chr15	76287401	76287800	+	0	NA	intron (NM_001127716, intron 4 of 10)	intron (NM_001127716, intron 4 of 10)	23869	NM_001127716	2108		NM_000126	ENSG00000140374	ETFA	EMA|GA2|MADD	electron transfer flavoprotein subunit alpha	protein-coding
239267	chrY	13477171	13477550	+	0	NA	intron (NR_047603, intron 2 of 28)	MSTD|LTR|ERVL-MaLR	-1817	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
82175	chr16	14927401	14928700	+	0	NA	promoter-TSS (NR_103772)	promoter-TSS (NR_103772)	-767	NR_103772	100288162		NR_103772		LOC100288162	-	uncharacterized LOC100288162	ncRNA
109269	chr19	538051	538530	+	0	NA	intron (NM_004359, intron 4 of 4)	intron (NM_004359, intron 4 of 4)	-5763	NM_005317	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
89517	chr16	89170501	89172430	+	0	NA	promoter-TSS (NM_004933)	promoter-TSS (NM_004933)	-283	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
170770	chr3	188555371	188555530	+	0	NA	intron (NR_164692, intron 5 of 9)	L2a|LINE|L2	13216	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
55709	chr12	107990371	107990550	+	0	NA	Intergenic	Intergenic	-86689	NR_037629	728739		NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
51701	chr12	53184801	53185000	+	0	NA	exon (NM_001004304, exon 3 of 7)	exon (NM_001004304, exon 3 of 7)	-3975	NM_001244705	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
88092	chr16	81515671	81516030	+	0	NA	intron (NM_030629, intron 1 of 20)	LTR33A_|LTR|ERVL	-18052	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
44947	chr11	116785051	116786000	+	0	NA	exon (NM_003904, exon 6 of 14)	exon (NM_003904, exon 6 of 14)	2498	NM_003904	8882		NM_003904	ENSG00000109917	ZPR1	GKAF|ZNF259	ZPR1 zinc finger	protein-coding
117593	chr19	21766751	21768280	+	0	NA	promoter-TSS (NM_001351670).2	promoter-TSS (NM_001351670).2	64	NM_001351669	163227		NM_173531	ENSG00000197020	ZNF100	-	zinc finger protein 100	protein-coding
157513	chr22	45338071	45338480	+	0	NA	intron (NR_146323, intron 11 of 11)	AluSx3|SINE|Alu	19832	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
106330	chr18	12950901	12951300	+	0	NA	intron (NM_031216, intron 1 of 8)	Tigger17c|DNA|TcMar-Tigger	3089	NM_001013437	81929		NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
26860	chr10	24893901	24895250	+	0	NA	intron (NM_020200, intron 3 of 8)	intron (NM_020200, intron 3 of 8)	58031	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
191149	chr6	4637871	4638030	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	27385	NR_122107	497048		NM_001011540	ENSG00000205444	KU-MEL-3	-	uncharacterized LOC497048	ncRNA
226551	chr9	72358321	72359180	+	0	NA	intron (NM_001278243, intron 5 of 6)	intron (NM_001278243, intron 5 of 6)	5806	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
216504	chr8	20254371	20254800	+	0	NA	intron (NM_021020, intron 2 of 3)	intron (NM_021020, intron 2 of 3)	18950	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
126262	chr2	27126821	27127280	+	0	NA	intron (NM_032604, intron 1 of 8)	AluY|SINE|Alu	3235	NM_032604	84696		NM_032604	ENSG00000143994	ABHD1	LABH1	abhydrolase domain containing 1	protein-coding
162525	chr3	48596251	48596350	+	0	NA	promoter-TSS (NM_000094)	promoter-TSS (NM_000094)	-971	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
70163	chr14	100308671	100310330	+	0	NA	Intergenic	Intergenic	1641	NR_029906	442910		NR_029906	ENSG00000198984	MIR345	MIRN345|hsa-mir-345|mir-345	microRNA 345	ncRNA
3738	chr1	16635071	16635430	+	0	NA	Intergenic	AluSx|SINE|Alu	-4344	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
187713	chr5	143386721	143387380	+	0	NA	intron (NR_157096, intron 1 of 7)	L2|LINE|L2	16233	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
59326	chr13	24426251	24426350	+	0	NA	intron (NM_006437, intron 33 of 33)	intron (NM_006437, intron 33 of 33)	86478	NM_006437	143		NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	poly(ADP-ribose) polymerase family member 4	protein-coding
175812	chr4	77849151	77849450	+	0	NA	Intergenic	AluJb|SINE|Alu	-13530	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
66960	chr14	65927851	65928450	+	0	NA	Intergenic	Intergenic	457048	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
165449	chr3	98564401	98565900	+	0	NA	Intergenic	Intergenic	28461	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
136383	chr2	176121521	176121830	+	0	NA	Intergenic	Intergenic	-1044	NM_014213	3235		NM_014213	ENSG00000128709	HOXD9	HOX4|HOX4C|Hox-4.3|Hox-5.2	homeobox D9	protein-coding
224145	chr9	4794171	4794330	+	0	NA	intron (NM_001286699, intron 1 of 6)	intron (NM_001286699, intron 1 of 6)	1306	NM_005772	10171		NM_005772	ENSG00000120158	RCL1	RNAC|RPCL1	RNA terminal phosphate cyclase like 1	protein-coding
17820	chr1	159881871	159882030	+	0	NA	intron (NM_012337, intron 7 of 11)	intron (NM_012337, intron 7 of 11)	18129	NR_130464	100422852		NR_130464	ENSG00000266458	MIR4259	-	microRNA 4259	ncRNA
108618	chr18	76213171	76213330	+	0	NA	intron (NR_146507, intron 2 of 3)	intron (NR_146507, intron 2 of 3)	3740	NR_146507	105372207		NR_146507	ENSG00000264260	LINC01893	-	long intergenic non-protein coding RNA 1893	ncRNA
101415	chr17	67392051	67392450	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	14969	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
85314	chr16	49530501	49530730	+	0	NA	intron (NM_001379286, intron 5 of 7)	MIRb|SINE|MIR	-12030	NR_144553	1596		NR_144553	ENSG00000260089	ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
235954	chrX	53362501	53362700	+	0	NA	Intergenic	MIRb|SINE|MIR	-41250	NM_001111125	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
86147	chr16	57738951	57739250	+	0	NA	intron (NM_005886, intron 2 of 19)	intron (NM_005886, intron 2 of 19)	3330	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
5182	chr1	24944901	24945100	+	0	NA	intron (NM_001031680, intron 1 of 5)	L2a|LINE|L2	-14724	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
115060	chr19	14167511	14168450	+	0	NA	intron (NM_001008701, intron 4 of 23)	intron (NM_001008701, intron 4 of 23)	30828	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
205561	chr7	20783701	20784000	+	0	NA	3' UTR (NM_182700, exon 2 of 2)	3' UTR (NM_182700, exon 2 of 2)	3036	NM_198956	221833		NM_182700	ENSG00000164651	SP8	BTD	Sp8 transcription factor	protein-coding
46418	chr11	126428451	126428560	+	0	NA	intron (NM_001301097, intron 14 of 15)	intron (NM_001301097, intron 14 of 15)	22418	NM_001254759	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
93846	chr17	20996871	20998200	+	0	NA	Intergenic	Intergenic	45476	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
105252	chr17	82430221	82430680	+	0	NA	intron (NM_001369487, intron 5 of 14)	AluSx|SINE|Alu	-11864	NM_024648	79701		NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron dependent oxygenase domain containing 3	protein-coding
66995	chr14	67268551	67268650	+	0	NA	intron (NM_001256550, intron 1 of 14)	MER41B|LTR|ERV1	27165	NM_022474	64398		NM_022474	ENSG00000072415	PALS1	MPP5	protein associated with LIN7 1, MAGUK p55 family member	protein-coding
121020	chr19	45795521	45795880	+	0	NA	TTS (NM_030785)	TTS (NM_030785)	-2855	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
104008	chr17	80104801	80105730	+	0	NA	intron (NM_000152, intron 2 of 19)	intron (NM_000152, intron 2 of 19)	3684	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
206314	chr7	30276171	30276750	+	0	NA	intron (NR_136267, intron 1 of 3)	intron (NR_136267, intron 1 of 3)	-8137	NM_147128	223082		NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
162847	chr3	49327451	49327630	+	0	NA	intron (NM_199443, intron 3 of 20)	AluSq2|SINE|Alu	12513	NM_003363	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
235604	chrX	47648801	47649200	+	0	NA	intron (NM_005229, intron 1 of 5)	L2a|LINE|L2	1604	NM_001114123	2002		NM_005229	ENSG00000126767	ELK1	-	ETS transcription factor ELK1	protein-coding
160529	chr3	30654201	30654400	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	47699	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
128574	chr2	60904271	60904430	+	0	NA	intron (NM_001291746, intron 4 of 9)	AluSx3|SINE|Alu	22776	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133374	chr2	118013101	118015080	+	0	NA	promoter-TSS (NM_019044)	promoter-TSS (NM_019044)	-20	NM_019044	54520		NM_019044	ENSG00000125633	CCDC93	-	coiled-coil domain containing 93	protein-coding
101688	chr17	68431671	68432200	+	0	NA	intron (NR_135470, intron 8 of 12)	intron (NR_135470, intron 8 of 12)	-7387	NR_030365	693220		NR_030365	ENSG00000207561	MIR635	MIRN635|hsa-mir-635	microRNA 635	ncRNA
214927	chr7	151537301	151537500	+	0	NA	Intergenic	AluJb|SINE|Alu	-17505	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
108485	chr18	70781901	70782300	+	0	NA	Intergenic	Intergenic	-131146	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
231718	chr9	131746551	131746650	+	0	NA	Intergenic	Intergenic	-6524	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
35649	chr11	1851951	1852050	+	0	NA	Intergenic	Intergenic	-1084	NM_002339	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
31641	chr10	97394301	97394730	+	0	NA	intron (NM_015179, intron 3 of 33)	AluJr4|SINE|Alu	6825	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
189483	chr5	173097321	173097780	+	0	NA	intron (NM_153607, intron 4 of 8)	L1MA9|LINE|L1	41198	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
34676	chr10	133355901	133356480	+	0	NA	intron (NM_001301828, intron 4 of 5)	intron (NM_001301828, intron 4 of 5)	1829	NM_001301827	282969		NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
216165	chr8	11708371	11709000	+	0	NA	exon (NM_002052, exon 2 of 7)	exon (NM_002052, exon 2 of 7)	3323	NR_132779	106635531		NR_132779		SNORA99	-	small nucleolar RNA, H/ACA box 99	snoRNA
142265	chr20	3170551	3170650	+	0	NA	intron (NM_001282533, intron 1 of 5)	AluSx|SINE|Alu	2949	NM_001365618	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
213041	chr7	131045621	131046530	+	0	NA	intron (NR_109850, intron 3 of 5)	AluSx1|SINE|Alu	60955	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
103540	chr17	78655521	78655980	+	0	NA	Intergenic	Intergenic	-23693	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
187614	chr5	142970651	142970750	+	0	NA	intron (NR_146198, intron 11 of 22)	MLT1K|LTR|ERVL-MaLR	-101790	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
167892	chr3	136143471	136143630	+	0	NA	intron (NM_002718, intron 13 of 13)	AluSz|SINE|Alu	50918	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
193196	chr6	29743271	29743630	+	0	NA	intron (NR_026972, intron 2 of 5).3	intron (NR_026972, intron 2 of 5).3	5599	NR_026972	285830		NM_001003807	ENSG00000214922	HLA-F-AS1	-	HLA-F antisense RNA 1	ncRNA
78681	chr15	95839051	95839800	+	0	NA	Intergenic	Intergenic	288416	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
23842	chr1	234612431	234613750	+	0	NA	Intergenic	Intergenic	-3565	NM_182972	359948		NM_182972	ENSG00000168264	IRF2BP2	CVID14	interferon regulatory factor 2 binding protein 2	protein-coding
235703	chrX	48835401	48836100	+	0	NA	promoter-TSS (NM_013271)	promoter-TSS (NM_013271)	-140	NM_013271	27344		NM_013271	ENSG00000102109	PCSK1N	BigLEN|PEN|PROSAAS|SAAS|SCG8|SgVIII	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
124995	chr2	9466121	9466500	+	0	NA	intron (NM_016207, intron 15 of 17)	intron (NM_016207, intron 15 of 17)	-8241	NM_001320859	285148		NM_001039613	ENSG00000134330	IAH1	-	isoamyl acetate hydrolyzing esterase 1 (putative)	protein-coding
1333	chr1	2466251	2466550	+	0	NA	Intergenic	Intergenic	-1051	NM_001303012	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
1285	chr1	2327551	2328050	+	0	NA	intron (NM_024848, intron 12 of 13)	CpG	24861	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
42421	chr11	69076601	69077050	+	0	NA	intron (NM_139075, intron 13 of 24)	intron (NM_139075, intron 13 of 24)	-6351	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
238788	chrX	154376601	154377130	+	0	NA	Intergenic	Intergenic	-2227	NM_001456	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
36255	chr11	3775971	3776430	+	0	NA	intron (NR_157590, intron 4 of 31)	AluJb|SINE|Alu	21346	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
158335	chr22	50447921	50449280	+	0	NA	exon (NM_001365819, exon 36 of 40)	exon (NM_001365819, exon 36 of 40)	26435	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
41932	chr11	67297421	67297880	+	0	NA	intron (NM_207354, intron 6 of 14)	AluY|SINE|Alu	-5880	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
227843	chr9	93474671	93474830	+	0	NA	intron (NM_001286723, intron 2 of 9)	AluY|SINE|Alu	-21149	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
91819	chr17	7112871	7113030	+	0	NA	intron (NM_080913, intron 2 of 8)	intron (NM_080913, intron 2 of 8)	1360	NM_080914	433		NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
95811	chr17	38742271	38742980	+	0	NA	intron (NM_001369614, intron 1 of 9)	intron (NM_001369614, intron 1 of 9)	4003	NM_001369615	7703		NM_007144	ENSG00000277258	PCGF2	MEL-18|RNF110|TPFS|ZNF144	polycomb group ring finger 2	protein-coding
61698	chr13	74060701	74061230	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	72964	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
73959	chr15	51775921	51776480	+	0	NA	intron (NM_014548, intron 4 of 9)	intron (NM_014548, intron 4 of 9)	24603	NM_014548	29767		NM_014548	ENSG00000128872	TMOD2	N-TMOD|NTMOD	tropomodulin 2	protein-coding
149973	chr21	36692971	36693330	+	0	NA	Intergenic	CpG	-5965	NM_005069	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
79744	chr16	1340601	1341600	+	0	NA	intron (NM_001199097, intron 6 of 33)	intron (NM_001199097, intron 6 of 33)	4903	NM_001199096	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
209705	chr7	84425771	84425930	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-106626	NR_110080	101927378		NR_110079	ENSG00000235139	LINC03017	-	long intergenic non-protein coding RNA 3017	ncRNA
186308	chr5	134576201	134576500	+	0	NA	intron (NM_015288, intron 10 of 10)	intron (NM_015288, intron 10 of 10)	50242	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
195053	chr6	35496121	35496490	+	0	NA	intron (NM_003214, intron 1 of 12)	CpG	774	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
194455	chr6	33175551	33175930	+	0	NA	intron (NM_080680, intron 29 of 65).6	intron (NM_080680, intron 29 of 65).6	16727	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
191176	chr6	5026071	5026430	+	0	NA	intron (NR_126015, intron 2 of 3)	intron (NR_126015, intron 2 of 3)	-3722	NR_126019	100129461		NR_126015	ENSG00000272142	LYRM4-AS1	-	LYRM4 antisense RNA 1	ncRNA
141948	chr20	1280171	1280330	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	13956	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
219422	chr8	71820001	71820230	+	0	NA	Intergenic	Intergenic	-23008	NR_033652	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
14184	chr1	121531601	121532000	+	0	NA	intron (NR_003955, intron 1 of 7)	AluSc|SINE|Alu	12688	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
98546	chr17	47680151	47680250	+	0	NA	intron (NM_002265, intron 20 of 21)	intron (NM_002265, intron 20 of 21)	-15064	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
125756	chr2	22984471	22984630	+	0	NA	Intergenic	L1PA2|LINE|L1	-400629	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
176051	chr4	82420151	82420250	+	0	NA	Intergenic	Intergenic	10025	NR_003249	9987		NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding
109137	chr18	80180001	80180900	+	0	NA	intron (NM_032510, intron 2 of 2)	intron (NM_032510, intron 2 of 2)	32526	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
239139	chrY	11319701	11320230	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1101625	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
88322	chr16	84360201	84360700	+	0	NA	Intergenic	L1MB7|LINE|L1	-8073	NM_001286527	9914		NM_014861	ENSG00000064270	ATP2C2	SPCA2	ATPase secretory pathway Ca2+ transporting 2	protein-coding
26529	chr10	21501151	21501450	+	0	NA	Intergenic	Intergenic	-4040	NR_160800	399726		NM_001010911	ENSG00000204682	MIR1915HG	C10orf114|CASC10|bA418C1.3	MIR1915 host gene	ncRNA
211433	chr7	105064971	105065130	+	0	NA	intron (NM_182931, intron 5 of 26)	intron (NM_182931, intron 5 of 26)	50845	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
36775	chr11	9405171	9405330	+	0	NA	intron (NM_006391, intron 2 of 24)	AluY|SINE|Alu	20598	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
95118	chr17	35000021	35001080	+	0	NA	intron (NM_013975, intron 16 of 19)	AluSp|SINE|Alu	20038	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
80736	chr16	3133751	3134050	+	0	NA	intron (NR_110900, intron 1 of 5)	L2a|LINE|L2	982	NR_110900	100507458		NR_110900		ZNF213-AS1	-	ZNF213 antisense RNA 1 (head to head)	ncRNA
199362	chr6	116112051	116112150	+	0	NA	intron (NM_152729, intron 4 of 11)	intron (NM_152729, intron 4 of 11)	11247	NM_152729	221294		NM_152729	ENSG00000178425	NT5DC1	C6orf200|LP2642|NT5C2L1	5'-nucleotidase domain containing 1	protein-coding
227221	chr9	88858871	88859030	+	0	NA	Intergenic	L1MA4A|LINE|L1	-113045	NR_036252	100423015		NR_036252	ENSG00000265873	MIR4289	-	microRNA 4289	ncRNA
81038	chr16	4305851	4306870	+	0	NA	Intergenic	Intergenic	-8401	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
223400	chr8	143924371	143924900	+	0	NA	exon (NM_000445, exon 32 of 33)	exon (NM_000445, exon 32 of 33)	14962	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
36614	chr11	6757401	6757700	+	0	NA	Intergenic	Intergenic	11407	NM_001004490	338755		NM_001004490	ENSG00000188124	OR2AG2	OR11-76|OR2AG2P	olfactory receptor family 2 subfamily AG member 2	protein-coding
152136	chr22	19973371	19973530	+	0	NA	intron (NM_001670, intron 13 of 19)	CpG-18768	9697	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
106798	chr18	23920051	23920350	+	0	NA	intron (NM_198129, intron 60 of 74)	intron (NM_198129, intron 60 of 74)	47180	NM_001127718	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
27883	chr10	41868651	41869930	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	498755	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
28054	chr10	43263371	43264100	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	3330	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
208393	chr7	66687851	66688150	+	0	NA	intron (NM_001367745, intron 1 of 7)	AluSp|SINE|Alu	5834	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
139408	chr2	222426051	222426680	+	0	NA	intron (NM_152386, intron 1 of 4)	intron (NM_152386, intron 1 of 4)	1822	NM_152386	130367		NM_152386	ENSG00000163082	SGPP2	SPP2|SPPase2	sphingosine-1-phosphate phosphatase 2	protein-coding
52607	chr12	56234301	56234500	+	0	NA	intron (NM_173596, intron 5 of 12)	AluSx|SINE|Alu	3683	NM_001135195	283375		NM_173596	ENSG00000139540	SLC39A5	LZT-Hs7|MYP24|ZIP5	solute carrier family 39 member 5	protein-coding
100973	chr17	64523601	64524000	+	0	NA	intron (NR_133644, intron 8 of 19)	AluJr4|SINE|Alu	16823	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
155042	chr22	37488201	37489250	+	0	NA	Intergenic	Intergenic	-2338	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
131394	chr2	96263571	96264330	+	0	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	2047	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
58209	chr12	126784371	126784600	+	0	NA	Intergenic	Intergenic	-12223	NR_033878	387895		NR_033878		LINC00944	DMDRMR	long intergenic non-protein coding RNA 944	ncRNA
31010	chr10	88687871	88688130	+	0	NA	Intergenic	Intergenic	-18249	NM_001080518	643414		NM_001080518	ENSG00000204021	LIPK	LIPL2|bA186O14.2	lipase family member K	protein-coding
164521	chr3	63874801	63875000	+	0	NA	intron (NR_165269, intron 3 of 4)	MLT1A0|LTR|ERVL-MaLR	10366	NM_000333	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
6790	chr1	30779421	30780430	+	0	NA	Intergenic	MIRb|SINE|MIR	-22151	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
207958	chr7	54933171	54933330	+	0	NA	Intergenic	CpG	-85767	NM_001346898	1956		NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|ERRP|HER1|NISBD2|PIG61|mENA	epidermal growth factor receptor	protein-coding
143969	chr20	32842451	32842750	+	0	NA	intron (NM_012325, intron 5 of 6)	intron (NM_012325, intron 5 of 6)	-16323	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
20785	chr1	201051371	201051750	+	0	NA	intron (NM_000069, intron 32 of 43)	intron (NM_000069, intron 32 of 43)	-27846	NM_001252102	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
182513	chr5	65100901	65101700	+	0	NA	Intergenic	Intergenic	332370	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
140137	chr2	231557571	231558200	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-27440	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
162341	chr3	47786921	47787580	+	0	NA	Intergenic	AluSz|SINE|Alu	-5357	NM_003074	6599		NM_003074	ENSG00000173473	SMARCC1	BAF155|CRACC1|HYC5|Rsc8|SRG3|SWI3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein-coding
137890	chr2	200852951	200853050	+	0	NA	TTS (NM_004071)	TTS (NM_004071)	11561	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
46850	chr11	133898221	133898680	+	0	NA	TTS (NR_039846)	TTS (NR_039846)	131	NR_039846	100616119		NR_039846	ENSG00000284020	MIR4697	-	microRNA 4697	ncRNA
233326	chr9	137433921	137434180	+	0	NA	TTS (NM_001033113)	TTS (NM_001033113)	7307	NM_198585	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
228526	chr9	100437701	100438200	+	0	NA	intron (NM_001198806, intron 1 of 2)	MIRb|SINE|MIR	-3956	NM_001198812	100526694		NM_001198812		MSANTD3-TMEFF1	C9orf2|C9orf3-TMEFF1|C9orf30-TMEFF1|H7365|TMEFF1|TR-1	MSANTD3-TMEFF1 readthrough	protein-coding
155199	chr22	37824621	37825500	+	0	NA	exon (NM_003614, exon 2 of 2)	exon (NM_003614, exon 2 of 2)	1678	NM_003614	8484		NM_003614	ENSG00000128310	GALR3	-	galanin receptor 3	protein-coding
115119	chr19	14360951	14361050	+	0	NA	intron (NR_134908, intron 1 of 3)	intron (NR_134908, intron 1 of 3)	2990	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
28542	chr10	50541371	50541680	+	0	NA	intron (NM_147156, intron 2 of 10)	intron (NM_147156, intron 2 of 10)	82431	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
86349	chr16	66516121	66517980	+	0	NA	intron (NM_001271935, intron 6 of 7)	intron (NM_001271935, intron 6 of 7)	33072	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
236495	chrX	71715671	71716230	+	0	NA	intron (NM_001145140, intron 2 of 5)	intron (NM_001145140, intron 2 of 5)	408	NR_165034	100132994		NM_001145139	ENSG00000215113	CXorf49B	CXorf49	chromosome X open reading frame 49B	protein-coding
4711	chr1	23174371	23174630	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-5642	NM_001142546	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
184217	chr5	95966351	95966650	+	0	NA	intron (NR_130776, intron 1 of 4)	intron (NR_130776, intron 1 of 4)	4499	NR_130776	101929710		NR_130776	ENSG00000251314	LOC101929710	-	uncharacterized LOC101929710	ncRNA
54839	chr12	95002171	95002330	+	0	NA	intron (NM_018838, intron 2 of 3)	AluSx4|SINE|Alu	1447	NM_018838	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
207608	chr7	44977021	44978300	+	0	NA	intron (NM_033054, intron 1 of 21)	intron (NM_033054, intron 1 of 21)	1355	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
27721	chr10	34251201	34251400	+	0	NA	intron (NM_019619, intron 22 of 24)	intron (NM_019619, intron 22 of 24)	-478620	NR_038932	100505583		NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA
16761	chr1	155329901	155330100	+	0	NA	intron (NM_014328, intron 8 of 8)	intron (NM_014328, intron 8 of 8)	5493	NM_001278230	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
42509	chr11	70352121	70352950	+	0	NA	intron (NM_001378006, intron 18 of 31)	intron (NM_001378006, intron 18 of 31)	-45971	NM_138565	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
178277	chr4	144142901	144143150	+	0	NA	Intergenic	Intergenic	-2307	NM_001308187	2993		NM_002099	ENSG00000170180	GYPA	CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2	glycophorin A (MNS blood group)	protein-coding
33788	chr10	123136871	123137850	+	0	NA	exon (NM_001105574, exon 2 of 2)	exon (NM_001105574, exon 2 of 2)	1390	NM_001105574	340784		NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
141589	chr2	241618901	241619580	+	0	NA	intron (NM_015963, intron 2 of 5)	L1MCa|LINE|L1	-1739	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
151661	chr22	17082071	17082430	+	0	NA	Intergenic	Intergenic	-2709	NM_001289905	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
124482	chr19	58557371	58557530	+	0	NA	intron (NM_003969, intron 1 of 5)	intron (NM_003969, intron 1 of 5)	1161	NM_003969	9040		NM_003969	ENSG00000130725	UBE2M	UBC-RS2|UBC12|hUbc12	ubiquitin conjugating enzyme E2 M	protein-coding
8814	chr1	42947551	42947650	+	0	NA	intron (NM_006516, intron 1 of 9)	AluSz|SINE|Alu	11268	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
39442	chr11	60927871	60928030	+	0	NA	intron (NM_017870, intron 3 of 10)	intron (NM_017870, intron 3 of 10)	3490	NM_178031	54972		NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
138097	chr2	202263551	202263850	+	0	NA	Intergenic	Intergenic	-2063	NM_015934	51602		NM_015934	ENSG00000055044	NOP58	HSPC120|NOP5|NOP5/NOP58	NOP58 ribonucleoprotein	protein-coding
208099	chr7	56372421	56372980	+	0	NA	Intergenic	Intergenic	75675	NR_029420	650226		NR_029420		LOC650226	-	ankyrin repeat domain containing 26 pseudogene	pseudo
148519	chr20	64092051	64093730	+	0	NA	exon (NM_182647, exon 3 of 5)	exon (NM_182647, exon 3 of 5)	202	NM_001318854	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
167725	chr3	131022351	131022930	+	0	NA	intron (NM_001288950, intron 3 of 6)	L1MB8|LINE|L1	4185	NM_014065	28990		NM_014065	ENSG00000034533	ASTE1	HT001	asteroid homolog 1	protein-coding
48998	chr12	13362351	13362600	+	0	NA	Intergenic	LTR41C|LTR|ERVL	14270	NR_036555	283422		NM_182558	ENSG00000180861	LINC01559	C12orf36	long intergenic non-protein coding RNA 1559	ncRNA
68415	chr14	81176771	81177500	+	0	NA	3' UTR (NM_201595, exon 9 of 9)	3' UTR (NM_201595, exon 9 of 9)	25699	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
25074	chr10	3835951	3836050	+	0	NA	Intergenic	Intergenic	2050	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
141660	chr2	241768851	241768950	+	0	NA	TTS (NM_152783)	TTS (NM_152783)	-7922	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
152713	chr22	21645971	21647100	+	0	NA	Intergenic	Intergenic	4233	NM_022044	23753		NM_022044	ENSG00000128228	SDF2L1	-	stromal cell derived factor 2 like 1	protein-coding
112793	chr19	7485051	7486000	+	0	NA	intron (NM_080662, intron 2 of 4)	AluY|SINE|Alu	3510	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
2780	chr1	10833571	10834030	+	0	NA	Intergenic	L2c|LINE|L2	-37154	NM_017766	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
155924	chr22	39617151	39617950	+	0	NA	intron (NM_001003406, intron 3 of 35)	intron (NM_001003406, intron 3 of 35)	46797	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
208142	chr7	64305101	64305580	+	0	NA	Intergenic	Intergenic	-8533	NM_001294255	728927		NM_001170905	ENSG00000234444	ZNF736	-	zinc finger protein 736	protein-coding
222141	chr8	132489571	132489800	+	0	NA	Intergenic	Intergenic	-8590	NM_004519	3786		NM_004519	ENSG00000184156	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel subfamily Q member 3	protein-coding
74636	chr15	60799971	60800880	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	118856	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
193072	chr6	28716601	28716800	+	0	NA	Intergenic	Intergenic	-62225	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
15845	chr1	151397301	151397780	+	0	NA	Intergenic	AluSx|SINE|Alu	-2033	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
154260	chr22	31621221	31623100	+	0	NA	promoter-TSS (NR_106959)	promoter-TSS (NR_106959)	-629	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
104464	chr17	81113521	81114200	+	0	NA	intron (NR_169574, intron 15 of 15)	intron (NR_169574, intron 15 of 15)	11513	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
200372	chr6	134186471	134186630	+	0	NA	intron (NM_001143676, intron 3 of 13)	ERVL-B4-int|LTR|ERVL	-8689	NM_001143677	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
59096	chr13	21138671	21139030	+	0	NA	Intergenic	L1ME3B|LINE|L1	-1664	NM_005870	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
94559	chr17	29612951	29613880	+	0	NA	exon (NM_152345, exon 15 of 15)	exon (NM_152345, exon 15 of 15)	4702	NM_001351302	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
169628	chr3	171285251	171285950	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	174805	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
108992	chr18	79693551	79693650	+	0	NA	intron (NM_001202504, intron 1 of 12)	Tigger4b|DNA|TcMar-Tigger	12170	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
122991	chr19	50821371	50821530	+	0	NA	intron (NM_002257, intron 2 of 4)	GA-rich|Low_complexity|Low_complexity	2337	NM_002257	3816		NM_002257	ENSG00000167748	KLK1	KLKR|Klk6|hK1	kallikrein 1	protein-coding
195359	chr6	36667671	36668030	+	0	NA	Intergenic	Intergenic	7276	NR_109836	101154753		NR_109836	ENSG00000281450	PANDAR	PANDA	promoter of CDKN1A antisense DNA damage activated RNA	ncRNA
184030	chr5	91365551	91366050	+	0	NA	Intergenic	AluJb|SINE|Alu	14297	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
120647	chr19	45074051	45074430	+	0	NA	intron (NM_145288, intron 2 of 2)	AluSx|SINE|Alu	-1387	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
17569	chr1	156821701	156822300	+	0	NA	intron (NM_001007792, intron 1 of 16)	LTR16D1|LTR|ERVL	-5152	NM_001161441	9047		NM_003975	ENSG00000027869	SH2D2A	F2771|SCAP|TSAD|VRAP	SH2 domain containing 2A	protein-coding
186971	chr5	139684821	139685450	+	0	NA	Intergenic	Intergenic	9692	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
67983	chr14	74910701	74911400	+	0	NA	intron (NR_163405, intron 7 of 13)	AluSx|SINE|Alu	11392	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
32747	chr10	104315521	104316680	+	0	NA	intron (NM_001272013, intron 1 of 1)	intron (NM_001272013, intron 1 of 1)	-7264	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
151805	chr22	18207471	18207630	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	-1641	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
17738	chr1	158972971	158973400	+	0	NA	intron (NM_198930, intron 7 of 7)	intron (NM_198930, intron 7 of 7)	-26791	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
33123	chr10	112185401	112185830	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-1850	NM_001244949	57678		NM_020918	ENSG00000119927	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
165476	chr3	99753301	99753530	+	0	NA	intron (NM_001850, intron 3 of 4)	intron (NM_001850, intron 3 of 4)	-64447	NM_032359	84319		NM_032359	ENSG00000184220	CMSS1	C3orf26	cms1 ribosomal small subunit homolog	protein-coding
221459	chr8	124441371	124441530	+	0	NA	Intergenic	AluJb|SINE|Alu	-9370	NM_017956	55039		NM_017956	ENSG00000183665	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog	protein-coding
170123	chr3	183275571	183275730	+	0	NA	intron (NM_015078, intron 15 of 29)	AluJo|SINE|Alu	22397	NM_032047	84002		NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
112694	chr19	7066421	7066680	+	0	NA	Intergenic	Intergenic	-3153	NM_001044387	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
152614	chr22	21415871	21419480	+	0	NA	intron (NM_015094, intron 1 of 2)	CpG	304	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
147035	chr20	53620301	53620700	+	0	NA	intron (NR_134576, intron 2 of 2)	intron (NR_134576, intron 2 of 2)	12146	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
60402	chr13	40962551	40963230	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	19392	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
101293	chr17	66415401	66415600	+	0	NA	non-coding (NR_110822, exon 2 of 4)	non-coding (NR_110822, exon 2 of 4)	1354	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
56584	chr12	117236551	117236800	+	0	NA	intron (NM_000620, intron 20 of 28)	intron (NM_000620, intron 20 of 28)	-46205	NM_033624	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
106766	chr18	23661921	23663200	+	0	NA	intron (NM_173505, intron 1 of 9)	CpG	351	NM_173505	147463		NM_173505	ENSG00000154065	ANKRD29	-	ankyrin repeat domain 29	protein-coding
134872	chr2	148729971	148730600	+	0	NA	intron (NM_015630, intron 2 of 13)	intron (NM_015630, intron 2 of 13)	85534	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
238294	chrX	149487351	149487950	+	0	NA	intron (NM_006123, intron 7 of 7)	intron (NM_006123, intron 7 of 7)	17656	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
144261	chr20	34541201	34542230	+	0	NA	TTS (NM_001382365)	TTS (NM_001382365)	-5129	NM_181509	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
201374	chr6	144855501	144855900	+	0	NA	Intergenic	Intergenic	272552	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
230993	chr9	129498421	129498680	+	0	NA	intron (NR_038955, intron 2 of 4)	intron (NR_038955, intron 2 of 4)	9890	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
233688	chrX	1178901	1180130	+	0	NA	Intergenic	Intergenic	33134	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
73085	chr15	40934321	40934980	+	0	NA	exon (NM_019074, exon 7 of 11)	exon (NM_019074, exon 7 of 11)	5310	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
123573	chr19	54453521	54453930	+	0	NA	intron (NM_001375640, intron 5 of 14).3	intron (NM_001375640, intron 5 of 14).3	4068	NM_001375640	114823		NM_052925	ENSG00000167615	LENG8	pp13842	leukocyte receptor cluster member 8	protein-coding
138373	chr2	203994601	203995030	+	0	NA	Intergenic	MIRb|SINE|MIR	58052	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
91484	chr17	4896171	4896330	+	0	NA	exon (NM_153827, exon 29 of 32)	exon (NM_153827, exon 29 of 32)	-3286	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
22682	chr1	223836751	223836850	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	9147	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
118321	chr19	35543451	35543930	+	0	NA	exon (NM_014364, exon 9 of 11)	exon (NM_014364, exon 9 of 11)	-1936	NM_001242598	10430		NM_032635	ENSG00000105677	TMEM147	NEDFLPH|NIFIE14	transmembrane protein 147	protein-coding
226928	chr9	79592821	79593550	+	0	NA	intron (NM_001351556, intron 4 of 18)	intron (NM_001351556, intron 4 of 18)	20008	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
179134	chr4	169079801	169080230	+	0	NA	Intergenic	Intergenic	-69760	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
24759	chr1	248837121	248838500	+	0	NA	promoter-TSS (NM_024836)	promoter-TSS (NM_024836)	-414	NM_024836	79894		NM_024836	ENSG00000171161	ZNF672	-	zinc finger protein 672	protein-coding
81255	chr16	4613451	4614200	+	0	NA	intron (NM_001330467, intron 1 of 2)	intron (NM_001330467, intron 1 of 2)	1063	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
185046	chr5	115838901	115839650	+	0	NA	intron (NM_004707, intron 1 of 3)	intron (NM_004707, intron 1 of 3)	2290	NM_001277783	9140		NM_004707	ENSG00000145782	ATG12	APG12|APG12L|FBR93|HAPG12	autophagy related 12	protein-coding
157964	chr22	49814121	49814730	+	0	NA	intron (NM_001304808, intron 2 of 12)	intron (NM_001304808, intron 2 of 12)	9906	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
106475	chr18	14176971	14177280	+	0	NA	Intergenic	REP522|Satellite|telo	-1972	NR_040113	440482		NM_001029999		ANKRD20A5P	ANKRD20A5	ankyrin repeat domain 20 family member A5, pseudogene	pseudo
207345	chr7	44070421	44070880	+	0	NA	Intergenic	AluJo|SINE|Alu	2783	NR_106897	102465504		NR_106897	ENSG00000283969	MIR6838	hsa-mir-6838	microRNA 6838	ncRNA
195585	chr6	37521951	37522050	+	0	NA	intron (NR_126057, intron 1 of 3)	intron (NR_126057, intron 1 of 3)	14652	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
41430	chr11	66065171	66065330	+	0	NA	intron (NM_006842, intron 19 of 21)	AluSz6|SINE|Alu	-5022	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
155177	chr22	37747971	37748700	+	0	NA	intron (NM_138632, intron 1 of 7)	intron (NM_138632, intron 1 of 7)	2101	NM_138632	11078		NM_007032	ENSG00000100106	TRIOBP	DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
126584	chr2	28761971	28762400	+	0	NA	intron (NM_206876, intron 2 of 8)	AluSz6|SINE|Alu	10355	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
10701	chr1	75233351	75233550	+	0	NA	intron (NM_152697, intron 12 of 23)	intron (NM_152697, intron 12 of 23)	99062	NM_001256114	431707		NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
233415	chr9	137588671	137588830	+	0	NA	intron (NM_138462, intron 1 of 5)	intron (NM_138462, intron 1 of 5)	1762	NM_138462	116225		NM_138462	ENSG00000165724	ZMYND19	MIZIP	zinc finger MYND-type containing 19	protein-coding
207870	chr7	50372821	50373630	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	54177	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
140028	chr2	231058621	231058880	+	0	NA	intron (NM_002807, intron 1 of 24)	L2a|LINE|L2	1883	NM_002807	5707		NM_002807	ENSG00000173692	PSMD1	P112|Rpn2|S1	proteasome 26S subunit, non-ATPase 1	protein-coding
33316	chr10	114879571	114880030	+	0	NA	intron (NM_001135051, intron 16 of 16)	AluJb|SINE|Alu	58020	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
86641	chr16	67445501	67445700	+	0	NA	intron (NM_004691, intron 2 of 7)	intron (NM_004691, intron 2 of 7)	14479	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
189158	chr5	171390801	171391400	+	0	NA	intron (NM_002520, intron 2 of 10)	Tigger3a|DNA|TcMar-Tigger	3251	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
190406	chr5	179811001	179812730	+	0	NA	intron (NM_001142298, intron 2 of 8).2	AluY|SINE|Alu	4856	NM_001142299	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
165765	chr3	105761271	105761700	+	0	NA	intron (NR_135806, intron 4 of 20)	THE1B|LTR|ERVL-MaLR	106106	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
174838	chr4	48370751	48371100	+	0	NA	intron (NM_020846, intron 2 of 7)	intron (NM_020846, intron 2 of 7)	29396	NM_020846	57606		NM_020846	ENSG00000109171	SLAIN2	KIAA1458	SLAIN motif family member 2	protein-coding
219657	chr8	80489701	80490350	+	0	NA	intron (NM_023929, intron 1 of 6)	intron (NM_023929, intron 1 of 6)	3799	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
97670	chr17	44218021	44220400	+	0	NA	intron (NR_045058, intron 1 of 20)	CpG	465	NM_001076684	7343		NM_014233	ENSG00000108312	UBTF	CONDBA|NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor	protein-coding
17493	chr1	156726601	156727150	+	0	NA	intron (NM_001370150, intron 2 of 3)	intron (NM_001370150, intron 2 of 3)	1564	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
65398	chr14	50791251	50791580	+	0	NA	intron (NM_020921, intron 5 of 30)	intron (NM_020921, intron 5 of 30)	-30382	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
186645	chr5	138563321	138563830	+	0	NA	intron (NM_004134, intron 9 of 16)	intron (NM_004134, intron 9 of 16)	-2465	NR_002913	26785		NR_002913	ENSG00000206989	SNORD63	RNU63|SNORD63A|U63	small nucleolar RNA, C/D box 63	snoRNA
29190	chr10	68967201	68967400	+	0	NA	intron (NM_004728, intron 6 of 14)	AluSz6|SINE|Alu	10860	NM_001256910	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
16296	chr1	154170021	154170280	+	0	NA	intron (NM_001364683, intron 7 of 8)	intron (NM_001364683, intron 7 of 8)	8054	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
162868	chr3	49365401	49365950	+	0	NA	intron (NM_001313947, intron 2 of 3)	AluSx|SINE|Alu	-7075	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
66462	chr14	61554771	61555130	+	0	NA	Intergenic	Intergenic	15244	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
78187	chr15	90561451	90561550	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	31577	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
182132	chr5	56152371	56152930	+	0	NA	intron (NM_024669, intron 6 of 11)	intron (NM_024669, intron 6 of 11)	80680	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
58717	chr12	132574851	132575150	+	0	NA	intron (NM_001367871, intron 14 of 18)	intron (NM_001367871, intron 14 of 18)	-6997	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
2013	chr1	6794251	6794430	+	0	NA	intron (NR_146202, intron 1 of 4)	intron (NR_146202, intron 1 of 4)	8886	NM_001349609	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
92686	chr17	13030501	13031050	+	0	NA	Intergenic	Intergenic	-12711	NM_001165962	60528		NM_018127	ENSG00000006744	ELAC2	COXPD17|ELC2|HPC2	elaC ribonuclease Z 2	protein-coding
129569	chr2	69945521	69945780	+	0	NA	Intergenic	Intergenic	16615	NM_152792	151516		NM_152792	ENSG00000244617	ASPRV1	ADLI|MUNO|SASP|SASPase|Taps	aspartic peptidase retroviral like 1	protein-coding
231540	chr9	131464251	131464550	+	0	NA	intron (NM_013318, intron 11 of 31)	intron (NM_013318, intron 11 of 31)	-21265	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
219907	chr8	86039621	86039880	+	0	NA	Intergenic	Intergenic	29918	NM_033126	85481		NM_033126	ENSG00000147613	PSKH2	-	protein serine kinase H2	protein-coding
160738	chr3	32467501	32468450	+	0	NA	Intergenic	CpG	34877	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
141355	chr2	240622921	240623830	+	0	NA	intron (NM_001195381, intron 5 of 5)	CpG	-1870	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
29165	chr10	68728451	68728780	+	0	NA	intron (NM_018237, intron 2 of 24)	intron (NM_018237, intron 2 of 24)	7376	NR_104262	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
184854	chr5	112136801	112137050	+	0	NA	Intergenic	Tigger4|DNA|TcMar-Tigger	-23601	NR_015370	114915		NM_053000		EPB41L4A-AS1	C5orf26|NCRNA00219|TIGA1	EPB41L4A antisense RNA 1	ncRNA
23211	chr1	227561871	227562330	+	0	NA	Intergenic	Intergenic	-1456	NM_001367909	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
109028	chr18	79728921	79729180	+	0	NA	exon (NM_001202504, exon 11 of 13)	exon (NM_001202504, exon 11 of 13)	47620	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
236778	chrX	79088501	79089350	+	0	NA	Intergenic	AluSq2|SINE|Alu	-55763	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
130143	chr2	74846201	74846580	+	0	NA	intron (NM_001371525, intron 1 of 17)	L1ME3A|LINE|L1	11220	NM_001371525	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
31147	chr10	89946201	89946400	+	0	NA	intron (NR_110655, intron 3 of 3)	BLACKJACK|DNA|hAT-Blackjack	11073	NR_110655	101926924		NR_110655	ENSG00000226159	LINC01375	-	long intergenic non-protein coding RNA 1375	ncRNA
53999	chr12	75395451	75396450	+	0	NA	intron (NM_152436, intron 1 of 3)	L1MB3|LINE|L1	4861	NR_072995	144321		NM_152436	ENSG00000180481	GLIPR1L2	-	GLIPR1 like 2	protein-coding
229186	chr9	114613171	114613950	+	0	NA	intron (NM_001330760, intron 1 of 8)	intron (NM_001330760, intron 1 of 8)	2269	NM_153045	203197		NM_153045	ENSG00000157693	TMEM268	C9orf91	transmembrane protein 268	protein-coding
106562	chr18	21686571	21687030	+	0	NA	intron (NM_138340, intron 3 of 8)	intron (NM_138340, intron 3 of 8)	3282	NR_031565	100302135		NR_031565	ENSG00000221493	MIR320C1	MIR320C-1|MIRN320C1|hsa-mir-320c-1|mir-320c-1	microRNA 320c-1	ncRNA
68176	chr14	75985421	75986850	+	0	NA	intron (NM_052873, intron 1 of 7)	CpG	372	NM_001255995	112752		NM_052873	ENSG00000119650	IFT43	C14orf179|CED3|RP81|SRTD18	intraflagellar transport 43	protein-coding
217459	chr8	28710401	28710650	+	0	NA	intron (NR_073468, intron 1 of 4)	L1MC|LINE|L1	9024	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
206251	chr7	29247101	29247300	+	0	NA	intron (NM_001293072, intron 1 of 12)	L2c|LINE|L2	-38230	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
103718	chr17	78835071	78835230	+	0	NA	intron (NR_169585, intron 4 of 19)	intron (NR_169585, intron 4 of 19)	5664	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
129680	chr2	70420821	70420900	+	0	NA	Intergenic	Intergenic	60780	NR_046798	100874273		NR_046798	ENSG00000224606	TGFA-IT1	-	TGFA intronic transcript 1	ncRNA
77488	chr15	84594121	84594380	+	0	NA	Intergenic	Intergenic	-6759	NM_001007072	54993		NM_017894	ENSG00000176371	ZSCAN2	ZFP29|ZNF854	zinc finger and SCAN domain containing 2	protein-coding
238972	chrX	155381371	155383330	+	0	NA	TTS (NR_036049).2	TTS (NR_036049).2	235	NM_001007523	474383		NM_001007523	ENSG00000288709	F8A2	HAP40	coagulation factor VIII associated 2	protein-coding
162896	chr3	49394751	49395050	+	0	NA	intron (NM_001313943, intron 1 of 5)	intron (NM_001313943, intron 1 of 5)	17076	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
26370	chr10	16440451	16441550	+	0	NA	intron (NM_001261837, intron 2 of 4)	intron (NM_001261837, intron 2 of 4)	4057	NM_001001484	9317		NM_030664	ENSG00000165983	PTER	HPHRP|RPR-1	phosphotriesterase related	protein-coding
130392	chr2	85316871	85317680	+	0	NA	TTS (NM_001206841)	TTS (NM_001206841)	10714	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
43208	chr11	75426601	75427000	+	0	NA	intron (NM_001039548, intron 2 of 5)	intron (NM_001039548, intron 2 of 5)	3829	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
148471	chr20	64045251	64045350	+	0	NA	Intergenic	Intergenic	4339	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
90585	chr17	1564371	1565580	+	0	NA	Intergenic	AluSc|SINE|Alu	-2183	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
32969	chr10	110495501	110495700	+	0	NA	Intergenic	AluSp|SINE|Alu	-2307	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
65156	chr14	45268221	45268900	+	0	NA	Intergenic	Intergenic	-15358	NM_018353	55320		NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
58925	chr13	19756651	19757150	+	0	NA	intron (NM_001354909, intron 3 of 8)	AluSc8|SINE|Alu	26045	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
125552	chr2	15591421	15593050	+	0	NA	intron (NM_004939, intron 1 of 25)	CpG	367	NM_004939	1653		NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding
76078	chr15	72479921	72480580	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	5920	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
211221	chr7	102633851	102633950	+	0	NA	Intergenic	Intergenic	8891	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
97521	chr17	43996121	43996580	+	0	NA	intron (NM_004160, intron 1 of 6)	MLT1G|LTR|ERVL-MaLR	8095	NM_004160	5697		NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
80532	chr16	2767301	2768100	+	0	NA	exon (NM_016333, exon 11 of 15)	exon (NM_016333, exon 11 of 15)	9580	NM_207013	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
239248	chrY	13318871	13319030	+	0	NA	intron (NR_047603, intron 20 of 28)	AluSc|SINE|Alu	-160227	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
225261	chr9	34371851	34371950	+	0	NA	exon (NM_020702, exon 2 of 2)	exon (NM_020702, exon 2 of 2)	4998	NM_020702	57462		NM_020702	ENSG00000164976	MYORG	IBGC7|KIAA1161|NET37	myogenesis regulating glycosidase (putative)	protein-coding
169386	chr3	160486271	160486800	+	0	NA	promoter-TSS (NR_148403)	promoter-TSS (NR_148403)	-788	NR_148403	100174949		NR_148401	ENSG00000248710	TRIM59-IFT80	IFT80-L	TRIM59-IFT80 readthrough (NMD candidate)	ncRNA
108274	chr18	63297971	63298130	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	21719	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
158470	chr22	50691571	50691750	+	0	NA	intron (NM_001372044, intron 11 of 23)	L1MB5|LINE|L1	18837	NM_001372044	85358		NM_001080420	ENSG00000251322	SHANK3	DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2	SH3 and multiple ankyrin repeat domains 3	protein-coding
204892	chr7	6079421	6079700	+	0	NA	Intergenic	Intergenic	-20331	NM_001134335	27102		NM_014413	ENSG00000086232	EIF2AK1	HCR|HRI|LEMSPAD|hHRI	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
98742	chr17	48040171	48040330	+	0	NA	Intergenic	AluJo|SINE|Alu	-2453	NM_016429	51226		NM_016429	ENSG00000005243	COPZ2	zeta2-COP	COPI coat complex subunit zeta 2	protein-coding
227433	chr9	90001001	90001200	+	0	NA	Intergenic	Intergenic	22435	NR_036253	100422963		NR_036253	ENSG00000263967	MIR4290	-	microRNA 4290	ncRNA
231273	chr9	130016451	130017150	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	26389	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
79056	chr16	129021	129700	+	0	NA	intron (NM_001243247, intron 3 of 14)	intron (NM_001243247, intron 3 of 14)	9313	NM_001077350	8131		NM_012075	ENSG00000103148	NPRL3	C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11	NPR3 like, GATOR1 complex subunit	protein-coding
178299	chr4	145136051	145136780	+	0	NA	3' UTR (NM_001366057, exon 21 of 21)	3' UTR (NM_001366057, exon 21 of 21)	-37874	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
179616	chr4	186056671	186056830	+	0	NA	Intergenic	Intergenic	-12406	NM_003265	7098		NM_003265	ENSG00000164342	TLR3	CD283|IIAE2|IMD83	toll like receptor 3	protein-coding
135981	chr2	172110121	172110380	+	0	NA	TTS (NR_126376)	TTS (NR_126376)	7244	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
138079	chr2	201985221	201985480	+	0	NA	Intergenic	Intergenic	-49237	NM_003507	8324		NM_003507	ENSG00000155760	FZD7	FzE3	frizzled class receptor 7	protein-coding
123240	chr19	53101401	53101880	+	0	NA	intron (NM_001322131, intron 1 of 5)	intron (NM_001322131, intron 1 of 5)	1782	NM_001322125	90338		NM_033288	ENSG00000170949	ZNF160	F11|HKr18|HZF5|KR18	zinc finger protein 160	protein-coding
208077	chr7	56090471	56091230	+	0	NA	intron (NR_047689, intron 1 of 8)	intron (NR_047689, intron 1 of 8)	2102	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
193147	chr6	29632021	29632700	+	0	NA	exon (NM_001470, exon 2 of 23).4	exon (NM_001470, exon 2 of 23).4	775	NM_021904	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
165839	chr3	105847071	105847980	+	0	NA	intron (NR_135807, intron 3 of 20)	intron (NR_135807, intron 3 of 20)	20066	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
63440	chr13	114109071	114109230	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	23473	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
228722	chr9	109116721	109116980	+	0	NA	intron (NM_032012, intron 1 of 17)	intron (NM_032012, intron 1 of 17)	3097	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
202721	chr6	158869101	158870650	+	0	NA	promoter-TSS (NR_160977)	promoter-TSS (NR_160977)	61	NR_160977	100130967		NM_001195032	ENSG00000203711	LINC02901	C6orf99	long intergenic non-protein coding RNA 2901	ncRNA
40451	chr11	64211121	64211700	+	0	NA	exon (NM_001382364, exon 4 of 14)	exon (NM_001382364, exon 4 of 14)	3704	NM_001382364	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
1082	chr1	1929221	1930200	+	0	NA	intron (NM_001304360, intron 26 of 38)	intron (NM_001304360, intron 26 of 38)	-10431	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
98308	chr17	46242351	46242980	+	0	NA	Intergenic	Intergenic	-17298	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
34132	chr10	128040471	128040830	+	0	NA	intron (NM_001323354, intron 1 of 19)	MIRb|SINE|MIR	-6962	NM_130435	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
28746	chr10	61987771	61988850	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	-61047	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
30380	chr10	78038601	78039050	+	0	NA	intron (NM_001142284, intron 5 of 6)	AluJb|SINE|Alu	4962	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
162437	chr3	48435821	48436580	+	0	NA	intron (NM_024661, intron 1 of 3)	intron (NM_024661, intron 1 of 3)	3919	NM_024661	79714		NM_024661	ENSG00000164051	CCDC51	MITOK	coiled-coil domain containing 51	protein-coding
214620	chr7	150723471	150723830	+	0	NA	3' UTR (NM_130759, exon 3 of 3)	3' UTR (NM_130759, exon 3 of 3)	7037	NM_130759	170575		NM_130759	ENSG00000213203	GIMAP1	HIMAP1|IAN2|IMAP1|IMAP38	GTPase, IMAP family member 1	protein-coding
96729	chr17	41666901	41667980	+	0	NA	Intergenic	L2b|LINE|L2	-21445	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
174467	chr4	39808251	39808580	+	0	NA	Intergenic	MIR|SINE|MIR	110279	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
187278	chr5	141555471	141555830	+	0	NA	intron (NM_005219, intron 17 of 27)	intron (NM_005219, intron 17 of 27)	-2661	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
114126	chr19	11195101	11195800	+	0	NA	intron (NM_001379550, intron 1 of 11)	intron (NM_001379550, intron 1 of 11)	2095	NM_001379557	25959		NM_015493	ENSG00000197256	KANK2	ANKRD25|MXRA3|NPHS16|PPKWH|SIP	KN motif and ankyrin repeat domains 2	protein-coding
116356	chr19	17868471	17868630	+	0	NA	Intergenic	Intergenic	-3395	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
40110	chr11	62812801	62813330	+	0	NA	intron (NM_001244666, intron 10 of 10)	AluSx4|SINE|Alu	-7625	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
118545	chr19	36120271	36121100	+	0	NA	intron (NR_155756, intron 2 of 5)	intron (NR_155756, intron 2 of 5)	4915	NM_001300971	1155		NM_001281	ENSG00000105254	TBCB	CG22|CKAP1|CKAPI	tubulin folding cofactor B	protein-coding
65028	chr14	39168101	39168500	+	0	NA	intron (NM_001079537, intron 1 of 5)	intron (NM_001079537, intron 1 of 5)	2033	NM_001079537	122553		NM_177452	ENSG00000182400	TRAPPC6B	NEDMEBA|TPC6	trafficking protein particle complex subunit 6B	protein-coding
79821	chr16	1422851	1423480	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2418	NM_001272051	283951		NM_001010878	ENSG00000174109	UQCC4	C16orf91|CCSMST1|URLC5|gs103	ubiquinol-cytochrome c reductase complex assembly factor 4	protein-coding
176287	chr4	87150571	87151150	+	0	NA	Intergenic	Intergenic	69408	NM_001292003	57563		NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
44769	chr11	112279521	112280300	+	0	NA	intron (NR_126004, intron 1 of 3)	L1MEi|LINE|L1	9161	NR_126004	283140		NR_126004	ENSG00000250303	LINC02762	-	long intergenic non-protein coding RNA 2762	ncRNA
164608	chr3	66303341	66304980	+	0	NA	intron (NM_173471, intron 6 of 10)	MLT1E1A|LTR|ERVL-MaLR	83157	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
17075	chr1	156120921	156121280	+	0	NA	intron (NM_170707, intron 1 of 11)	AluJb|SINE|Alu	-5070	NM_001282624	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
182964	chr5	71451571	71451930	+	0	NA	Intergenic	MIR|SINE|MIR	-3901	NM_018429	55814		NM_018429	ENSG00000145734	BDP1	DFNB112|HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
175731	chr4	77704621	77705030	+	0	NA	Intergenic	LTR33A|LTR|ERVL	99005	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
126036	chr2	25363801	25364000	+	0	NA	Intergenic	Intergenic	-21310	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
161088	chr3	38136701	38137800	+	0	NA	promoter-TSS (NM_001607)	promoter-TSS (NM_001607)	-8	NR_024024	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
79128	chr16	222221	223330	+	0	NA	intron (NM_018032, intron 2 of 8)	AluSp|SINE|Alu	6674	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
44538	chr11	108007451	108007750	+	0	NA	Intergenic	L2|LINE|L2	-1298	NM_003478	8065		NM_003478	ENSG00000166266	CUL5	CUL-5|VACM-1|VACM1	cullin 5	protein-coding
214174	chr7	144832671	144833300	+	0	NA	intron (NR_146934, intron 1 of 6)	intron (NR_146934, intron 1 of 6)	2955	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
199530	chr6	118748421	118748680	+	0	NA	Intergenic	Intergenic	-34158	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
183352	chr5	77030051	77031250	+	0	NA	5' UTR (NM_018046, exon 1 of 14)	5' UTR (NM_018046, exon 1 of 14)	246	NM_018046	55109		NM_013303	ENSG00000164252	AGGF1	GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q	angiogenic factor with G-patch and FHA domains 1	protein-coding
120668	chr19	45097401	45097800	+	0	NA	intron (NM_019121, intron 1 of 12)	intron (NM_019121, intron 1 of 12)	4421	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
60900	chr13	46161601	46163330	+	0	NA	intron (NM_002298, intron 1 of 15)	SVA_C|Retroposon|SVA	19712	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
196733	chr6	45312651	45313150	+	0	NA	intron (NM_001350329, intron 2 of 10)	L1PB1|LINE|L1	-15417	NM_001015051	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
164958	chr3	71266101	71266300	+	0	NA	intron (NM_001012505, intron 5 of 6)	MamRep4096|DNA|hAT?	-21123	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
160390	chr3	28009271	28009430	+	0	NA	Intergenic	HAL1|LINE|L1	-175214	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
168018	chr3	136881471	136881630	+	0	NA	intron (NM_001291999, intron 1 of 3)	L1MB2|LINE|L1	19342	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
16485	chr1	154747621	154748380	+	0	NA	intron (NM_001204087, intron 3 of 8)	intron (NM_001204087, intron 3 of 8)	111876	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
143587	chr20	31681151	31681450	+	0	NA	intron (NR_134257, intron 1 of 2)	L2a|LINE|L2	-40207	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
15510	chr1	150482621	150483080	+	0	NA	Intergenic	AluJr|SINE|Alu	-4569	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
207521	chr7	44806801	44807150	+	0	NA	Intergenic	AluSp|SINE|Alu	10294	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
117020	chr19	18916801	18917230	+	0	NA	intron (NM_007263, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	2372	NM_007263	11316		NM_007263	ENSG00000105669	COPE	epsilon-COP	COPI coat complex subunit epsilon	protein-coding
39940	chr11	62545001	62547400	+	0	NA	promoter-TSS (NM_001346446)	promoter-TSS (NM_001346446)	-374	NM_001346445	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
188981	chr5	163512071	163512430	+	0	NA	intron (NM_182796, intron 2 of 6)	intron (NM_182796, intron 2 of 6)	6631	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
233293	chr9	137318871	137319530	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-16929	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
79783	chr16	1380721	1381180	+	0	NA	intron (NM_001372107, intron 10 of 14)	AluSx|SINE|Alu	-1298	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
59113	chr13	21289371	21289900	+	0	NA	intron (NM_001365454, intron 3 of 4)	intron (NM_001365454, intron 3 of 4)	8456	NM_001365454								
223457	chr8	143992871	143993330	+	0	NA	3' UTR (NM_001009184, exon 7 of 7)	3' UTR (NM_001009184, exon 7 of 7)	3042	NM_000837	2907		NM_000837	ENSG00000178719	GRINA	HNRGW|LFG1|NMDARA1|TMBIM3	glutamate ionotropic receptor NMDA type subunit associated protein 1	protein-coding
88104	chr16	81528351	81528650	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-5402	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
14143	chr1	121048301	121048800	+	0	NA	intron (NR_135813, intron 1 of 2)	intron (NR_135813, intron 1 of 2)	3617	NR_135813	101929798		NR_135813	ENSG00000290904	PDE4DIPP4	CH17-118O6.3	PDE4DIP pseudogene 4	pseudo
185079	chr5	117454771	117455150	+	0	NA	intron (NR_046089, intron 2 of 5)	L1PA17|LINE|L1	39448	NR_046089	728342		NR_046089		LINC00992	ERINA	long intergenic non-protein coding RNA 992	ncRNA
179962	chr5	834071	834230	+	0	NA	intron (NM_024786, intron 6 of 12)	L1MEd|LINE|L1	16836	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
7618	chr1	35534951	35535250	+	0	NA	intron (NM_024874, intron 2 of 20)	AluSx3|SINE|Alu	22303	NM_024874	79932		NM_024874	ENSG00000142687	KIAA0319L	AAVR|AAVRL	KIAA0319 like	protein-coding
5671	chr1	26321151	26322730	+	0	NA	TTS (NM_001039775)	TTS (NM_001039775)	-3675	NM_145345	91544		NM_145345	ENSG00000158062	UBXN11	COA-1|PP2243|SOC|SOCI|UBXD5	UBX domain protein 11	protein-coding
55217	chr12	101801751	101801850	+	0	NA	intron (NM_024312, intron 1 of 20)	AluJr|SINE|Alu	29159	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
157132	chr22	42791501	42791830	+	0	NA	Intergenic	Intergenic	65608	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
49155	chr12	14951121	14951400	+	0	NA	promoter-TSS (NM_001321423)	promoter-TSS (NM_001321423)	-109	NM_001321422	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
209936	chr7	92588321	92588900	+	0	NA	intron (NM_001040057, intron 1 of 11)	intron (NM_001040057, intron 1 of 11)	1439	NM_001288584	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
64000	chr14	22491071	22491230	+	0	NA	Intergenic	Intergenic	-8191	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
181911	chr5	54717551	54718250	+	0	NA	intron (NR_104658, intron 1 of 2)	L1MA9|LINE|L1	-14576	NR_104659	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
211843	chr7	108569051	108571780	+	0	NA	promoter-TSS (NM_001287601)	promoter-TSS (NM_001287601)	541	NM_012328	4189		NM_012328	ENSG00000128590	DNAJB9	ERdj4|MDG-1|MDG1|MST049|MSTP049	DnaJ heat shock protein family (Hsp40) member B9	protein-coding
208226	chr7	65373561	65374850	+	0	NA	intron (NM_001287534, intron 1 of 1)	CpG	350	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
113480	chr19	10006271	10006680	+	0	NA	intron (NM_015719, intron 1 of 66)	intron (NM_015719, intron 1 of 66)	4029	NM_015719	50509		NM_015719	ENSG00000080573	COL5A3	-	collagen type V alpha 3 chain	protein-coding
196634	chr6	44274951	44275200	+	0	NA	intron (NM_001137560, intron 2 of 2)	AluY|SINE|Alu	4625	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
2141	chr1	8360451	8360950	+	0	NA	exon (NM_001042681, exon 18 of 23)	exon (NM_001042681, exon 18 of 23)	42586	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
125635	chr2	19362201	19362600	+	0	NA	Intergenic	Intergenic	-3777	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
27844	chr10	38578951	38579130	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	-117556	NR_045000	399746		NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
219878	chr8	85463301	85464580	+	0	NA	promoter-TSS (NM_001293675)	promoter-TSS (NM_001293675)	38	NM_001293675	760		NM_000067	ENSG00000104267	CA2	CA-II|CAC|CAII|Car2|HEL-76|HEL-S-282	carbonic anhydrase 2	protein-coding
21997	chr1	209766751	209766850	+	0	NA	intron (NM_025228, intron 8 of 16)	AluSz6|SINE|Alu	-1765	NM_001287754	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
82416	chr16	16257301	16257700	+	0	NA	intron (NM_173614, intron 11 of 30)	intron (NM_173614, intron 11 of 30)	24905	NM_173614	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
31349	chr10	93352701	93352930	+	0	NA	intron (NM_133337, intron 31 of 52)	intron (NM_133337, intron 31 of 52)	129519	NM_133337	26509		NM_013451	ENSG00000138119	MYOF	FER1L3|HAE7	myoferlin	protein-coding
185373	chr5	127626651	127626780	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-22306	NM_001048252	613212		NM_001048252	ENSG00000205279	CTXN3	KABE	cortexin 3	protein-coding
175609	chr4	75938771	75938930	+	0	NA	intron (NM_014435, intron 2 of 10)	intron (NM_014435, intron 2 of 10)	2163	NM_014435	27163		NM_014435	ENSG00000138744	NAAA	ASAHL|PLT	N-acylethanolamine acid amidase	protein-coding
35341	chr11	1151621	1151950	+	0	NA	Intergenic	Intergenic	-6168	NM_001304359	4586		NM_017511	ENSG00000215182	MUC5AC	MUC5|TBM|leB|mucin	mucin 5AC, oligomeric mucus/gel-forming	protein-coding
880	chr1	1640351	1641050	+	0	NA	intron (NM_033490, intron 9 of 18)	intron (NM_033490, intron 9 of 18)	7920	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
169501	chr3	169865101	169865850	+	0	NA	intron (NM_001277127, intron 1 of 8)	intron (NM_001277127, intron 1 of 8)	4460	NM_024727	79782		NM_024727	ENSG00000114248	LRRC31	HEL-S-293	leucine rich repeat containing 31	protein-coding
197888	chr6	89297721	89298400	+	0	NA	intron (NM_002043, intron 2 of 8)	intron (NM_002043, intron 2 of 8)	17239	NM_002043	2570		NM_002043	ENSG00000111886	GABRR2	-	gamma-aminobutyric acid type A receptor subunit rho2	protein-coding
19798	chr1	182595571	182595930	+	0	NA	Intergenic	Intergenic	-6494	NM_021133	6041		NM_021133	ENSG00000135828	RNASEL	PRCA1|RNS4	ribonuclease L	protein-coding
95242	chr17	35372421	35374100	+	0	NA	intron (NM_001376008, intron 1 of 6)	intron (NM_001376008, intron 1 of 6)	361	NM_001376010	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
190094	chr5	177825971	177827130	+	0	NA	Intergenic	L1MD2|LINE|L1	-17043	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
13478	chr1	114581171	114582450	+	0	NA	promoter-TSS (NM_005872)	promoter-TSS (NM_005872)	-195	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
74172	chr15	55320221	55320750	+	0	NA	intron (NM_004855, intron 2 of 11)	MER44A|DNA|TcMar-Tigger	1263	NM_004855	9488		NM_004855	ENSG00000069943	PIGB	DEE80|EIEE80|GPI-MT-III|PIG-B	phosphatidylinositol glycan anchor biosynthesis class B	protein-coding
67944	chr14	74784471	74785230	+	0	NA	intron (NM_019589, intron 4 of 20)	L3|LINE|CR1	21534	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
72541	chr15	34333751	34334550	+	0	NA	intron (NM_133647, intron 1 of 24)	intron (NM_133647, intron 1 of 24)	2694	NM_133647	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
61897	chr13	77319871	77320230	+	0	NA	intron (NM_015057, intron 1 of 82)	LTR16|LTR|ERVL	7044	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
228895	chr9	112754421	112755400	+	0	NA	intron (NM_001012994, intron 1 of 8)	intron (NM_001012994, intron 1 of 8)	4150	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
134428	chr2	143127601	143127800	+	0	NA	Intergenic	AluSc|SINE|Alu	-1719	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
120940	chr19	45676901	45678600	+	0	NA	exon (NM_001308418, exon 9 of 13)	exon (NM_001308418, exon 9 of 13)	-2742	NR_037512	100500845		NR_037512	ENSG00000283212	MIR642B	mir-642b	microRNA 642b	ncRNA
57036	chr12	120725251	120726980	+	0	NA	intron (NM_001302554, intron 1 of 9)	intron (NM_001302554, intron 1 of 9)	289	NM_001302554	35		NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	acyl-CoA dehydrogenase short chain	protein-coding
175959	chr4	81214501	81214700	+	0	NA	intron (NM_006259, intron 1 of 18)	intron (NM_006259, intron 1 of 18)	517	NM_006259	5593		NM_006259	ENSG00000138669	PRKG2	AMD4|PKG2|PRKGR2|SMDP|cGK2|cGKII	protein kinase cGMP-dependent 2	protein-coding
196116	chr6	42380271	42381200	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	71316	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
78389	chr15	91866151	91866850	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	12196	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
138046	chr2	201419971	201420780	+	0	NA	intron (NM_015049, intron 2 of 15)	intron (NM_015049, intron 2 of 15)	31083	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
56543	chr12	116861321	116861630	+	0	NA	intron (NM_003806, intron 1 of 1)	intron (NM_003806, intron 1 of 1)	19966	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
37061	chr11	12288551	12288880	+	0	NA	intron (NM_032867, intron 1 of 8)	intron (NM_032867, intron 1 of 8)	1815	NM_032867	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
86010	chr16	57477671	57478630	+	0	NA	intron (NM_001330556, intron 1 of 6)	intron (NM_001330556, intron 1 of 6)	1607	NM_001369621	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
214402	chr7	149792601	149792800	+	0	NA	non-coding (NR_163594, exon 37 of 103)	non-coding (NR_163594, exon 37 of 103)	16658	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
145145	chr20	38828601	38829130	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	23168	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
24279	chr1	236503221	236503480	+	0	NA	Intergenic	Intergenic	-14864	NM_201545	3964		NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
143806	chr20	32467371	32467730	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	15940	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
81775	chr16	11516371	11516530	+	0	NA	intron (NM_001370704, intron 4 of 66)	intron (NM_001370704, intron 4 of 66)	10797	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
118827	chr19	38564951	38565980	+	0	NA	exon (NM_001042723, exon 90 of 105)	exon (NM_001042723, exon 90 of 105)	-30882	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
25246	chr10	6048871	6049230	+	0	NA	intron (NM_000417, intron 1 of 7)	MLT2B2|LTR|ERVL	13317	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
152278	chr22	20296201	20296400	+	0	NA	Intergenic	AluY|SINE|Alu	23760	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
7970	chr1	37807451	37809280	+	0	NA	promoter-TSS (NM_024640)	promoter-TSS (NM_024640)	-157	NM_024640	79693		NM_024640	ENSG00000196449	YRDC	DRIP3|GAMOS10|IRIP|SUA5	yrdC N6-threonylcarbamoyltransferase domain containing	protein-coding
97409	chr17	43393621	43394650	+	0	NA	Intergenic	Intergenic	-4858	NM_001661	379		NM_001661	ENSG00000175906	ARL4D	ARF4L	ADP ribosylation factor like GTPase 4D	protein-coding
20800	chr1	201153871	201155650	+	0	NA	promoter-TSS (NM_001288566)	promoter-TSS (NM_001288566)	-205	NM_001288569	252839		NM_016456	ENSG00000116857	TMEM9	DERM4|TMEM9A	transmembrane protein 9	protein-coding
204725	chr7	5552971	5553330	+	0	NA	Intergenic	AluY|SINE|Alu	-22549	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
81614	chr16	10740821	10741500	+	0	NA	Intergenic	L2|LINE|L2	-2626	NM_001278506	4682		NM_002484	ENSG00000103274	NUBP1	CIAO5|NBP|NBP1|NBP35	NUBP iron-sulfur cluster assembly factor 1, cytosolic	protein-coding
36038	chr11	2925471	2925630	+	0	NA	TTS (NM_002555).2	TTS (NM_002555).2	3870	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
43186	chr11	75405601	75405800	+	0	NA	3' UTR (NM_001260506, exon 7 of 7)	3' UTR (NM_001260506, exon 7 of 7)	1279	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
52808	chr12	56763251	56763500	+	0	NA	promoter-TSS (NM_003725)	promoter-TSS (NM_003725)	51	NM_003725	8630		NM_003725	ENSG00000025423	HSD17B6	HSE|RODH|SDR9C6	hydroxysteroid 17-beta dehydrogenase 6	protein-coding
76103	chr15	72499921	72500530	+	0	NA	intron (NM_005744, intron 1 of 13)	AluSc|SINE|Alu	25895	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
93427	chr17	18443471	18443630	+	0	NA	TTS (NR_073414)	TTS (NR_073414)	3642	NR_073414	729252		NR_073414		KRT16P1	KRT14P|KRT16P	keratin 16 pseudogene 1	pseudo
101326	chr17	66673371	66674630	+	0	NA	intron (NM_002737, intron 5 of 16)	intron (NM_002737, intron 5 of 16)	-113072	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
120696	chr19	45164051	45165800	+	0	NA	exon (NM_001270891, exon 3 of 6)	exon (NM_001270891, exon 3 of 6)	-4775	NM_198478	284353		NM_198478	ENSG00000179846	NKPD1	-	NTPase KAP family P-loop domain containing 1	protein-coding
191238	chr6	5835851	5835950	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-140628	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
141967	chr20	1323871	1324100	+	0	NA	intron (NR_037661, intron 2 of 9)	L2b|LINE|L2	-1358	NR_040047	100507495		NR_040047	ENSG00000234684	SDCBP2-AS1	-	SDCBP2 antisense RNA 1	ncRNA
220190	chr8	95248501	95248980	+	0	NA	intron (NM_001363260, intron 4 of 4)	intron (NM_001363260, intron 4 of 4)	-20096	NR_038201	100616530		NR_038201	ENSG00000253773	CFAP418-AS1	C8orf37-AS1	CFAP418 antisense RNA 1	ncRNA
20461	chr1	198564301	198565080	+	0	NA	Intergenic	Intergenic	-23745	NM_133326	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
52101	chr12	54147201	54147930	+	0	NA	Intergenic	Intergenic	21494	NR_026656	400043		NR_026656	ENSG00000250742	LINC02381	HMS|lncEPAT	long intergenic non-protein coding RNA 2381	ncRNA
203394	chr6	170641301	170641550	+	0	NA	Intergenic	Intergenic	-56733	NM_001199461	5134		NM_002598	ENSG00000071994	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
121593	chr19	47350901	47351130	+	0	NA	intron (NM_014681, intron 1 of 16)	intron (NM_014681, intron 1 of 16)	1700	NM_014681	9704		NM_014681	ENSG00000134815	DHX34	DDX34|HRH1	DExH-box helicase 34	protein-coding
193772	chr6	31361051	31361980	+	0	NA	Intergenic	L1PA13|LINE|L1	-4336	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
65316	chr14	50099221	50099730	+	0	NA	intron (NR_131171, intron 1 of 8)	intron (NR_131171, intron 1 of 8)	5568	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
51251	chr12	51020501	51020980	+	0	NA	intron (NM_001174125, intron 1 of 15)	MER2|DNA|TcMar-Tigger	5401	NM_001174129	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
55259	chr12	102142601	102143050	+	0	NA	intron (NM_001319993, intron 3 of 11)	L1PA5|LINE|L1	22642	NM_001382723	55010		NM_017915	ENSG00000185480	PARPBP	AROM|C12orf48|PARI	PARP1 binding protein	protein-coding
39185	chr11	57459851	57461280	+	0	NA	promoter-TSS (NM_178570)	promoter-TSS (NM_178570)	37	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
172221	chr4	1317871	1318030	+	0	NA	intron (NR_123716, intron 3 of 6)	intron (NR_123716, intron 3 of 6)	8159	NM_001297433	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
93739	chr17	19771421	19772800	+	0	NA	3' UTR (NM_014683, exon 27 of 27)	3' UTR (NM_014683, exon 27 of 27)	-23812	NM_001330150	218		NM_000691	ENSG00000108602	ALDH3A1	ALDH3|ALDHIII	aldehyde dehydrogenase 3 family member A1	protein-coding
2787	chr1	10897071	10897480	+	0	NA	Intergenic	Intergenic	69412	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
173388	chr4	7965131	7965850	+	0	NA	3' UTR (NM_001130084, exon 20 of 20)	3' UTR (NM_001130084, exon 20 of 20)	-25564	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
16218	chr1	153905651	153906150	+	0	NA	intron (NM_020699, intron 1 of 10)	AluSx|SINE|Alu	17072	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
152013	chr22	19422371	19422850	+	0	NA	intron (NM_003325, intron 1 of 24)	L2a|LINE|L2	9123	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
112093	chr19	5563821	5564350	+	0	NA	intron (NR_027064, intron 1 of 2)	intron (NR_027064, intron 1 of 2)	3949	NR_027064								
25004	chr10	3199051	3199750	+	0	NA	Intergenic	Intergenic	-26559	NM_001242307	10531		NM_014889	ENSG00000107959	PITRM1	MP1|PreP|SCAR30	pitrilysin metallopeptidase 1	protein-coding
110395	chr19	1942501	1944100	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	2128	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
150315	chr21	42007571	42008230	+	0	NA	intron (NM_001320731, intron 1 of 3)	intron (NM_001320731, intron 1 of 3)	-1294	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
167025	chr3	126358871	126359130	+	0	NA	Intergenic	Intergenic	-1592	NM_014079	28999		NM_014079	ENSG00000163884	KLF15	KKLF	KLF transcription factor 15	protein-coding
185542	chr5	131353351	131354550	+	0	NA	intron (NM_001375633, intron 2 of 5)	intron (NM_001375633, intron 2 of 5)	89897	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
62889	chr13	110717271	110717650	+	0	NA	intron (NM_005537, intron 1 of 1)	intron (NM_005537, intron 1 of 1)	2023	NM_001267728	3621		NM_005537	ENSG00000153487	ING1	p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a	inhibitor of growth family member 1	protein-coding
218975	chr8	61708701	61709300	+	0	NA	intron (NM_032466, intron 1 of 13)	intron (NM_032466, intron 1 of 13)	5592	NM_004318	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
208799	chr7	73606851	73607880	+	0	NA	exon (NM_032954, exon 4 of 17)	exon (NM_032954, exon 4 of 17)	17157	NM_032953	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
52924	chr12	57243501	57244350	+	0	NA	intron (NR_104422, intron 7 of 7)	intron (NR_104422, intron 7 of 7)	-3233	NM_020142	56901		NM_020142	ENSG00000185633	NDUFA4L2	COXFA4L2|MISTRH|NUOMS	NDUFA4 mitochondrial complex associated like 2	protein-coding
138797	chr2	216114171	216115350	+	0	NA	intron (NM_021141, intron 2 of 20)	MER50C|LTR|ERV1	5412	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
105665	chr18	2597471	2598000	+	0	NA	intron (NM_006101, intron 11 of 16)	AluSq2|SINE|Alu	26178	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
176939	chr4	102871951	102872050	+	0	NA	intron (NM_001008388, intron 1 of 2)	intron (NM_001008388, intron 1 of 2)	3008	NM_001008388	493856		NM_001008388	ENSG00000145354	CISD2	ERIS|Miner1|NAF-1|WFS2|ZCD2	CDGSH iron sulfur domain 2	protein-coding
9843	chr1	54228721	54228980	+	0	NA	intron (NM_145716, intron 14 of 17)	intron (NM_145716, intron 14 of 17)	-7593	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
168540	chr3	146189601	146189830	+	0	NA	Intergenic	Intergenic	-28220	NM_000935	5352		NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding
56645	chr12	119153571	119153830	+	0	NA	intron (NM_194286, intron 11 of 12)	intron (NM_194286, intron 11 of 12)	22784	NR_134996	105370024		NR_134996	ENSG00000256884	LOC105370024	-	uncharacterized LOC105370024	ncRNA
229966	chr9	126719471	126720350	+	0	NA	Intergenic	Intergenic	-85096	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
93568	chr17	19093471	19093830	+	0	NA	intron (NR_164158, intron 3 of 3)	intron (NR_164158, intron 3 of 3)	4189	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
180422	chr5	10422871	10423250	+	0	NA	intron (NM_001270660, intron 21 of 24)	intron (NM_001270660, intron 21 of 24)	18791	NR_102746	100505845		NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
64599	chr14	30363871	30364030	+	0	NA	Intergenic	L1PA2|LINE|L1	-195173	NM_001308097	55632		NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
42579	chr11	72002401	72002600	+	0	NA	TTS (NM_006185)	TTS (NM_006185)	2573	NM_001145055	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
149638	chr21	33493571	33493730	+	0	NA	Intergenic	Intergenic	-1927	NM_001320746	54943		NM_017833	ENSG00000177692	DNAJC28	C21orf55|C21orf78	DnaJ heat shock protein family (Hsp40) member C28	protein-coding
191547	chr6	11535621	11536150	+	0	NA	Intergenic	L2a|LINE|L2	-1864	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
214594	chr7	150665701	150666850	+	0	NA	Intergenic	MIRb|SINE|MIR	-19431	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
163485	chr3	50708321	50708780	+	0	NA	intron (NM_004947, intron 1 of 52)	L1MA4|LINE|L1	33470	NR_039950	100616138		NR_039950	ENSG00000272543	MIR4787	mir-4787	microRNA 4787	ncRNA
12221	chr1	100405671	100406450	+	0	NA	intron (NM_001319210, intron 4 of 16)	L1PA11|LINE|L1	53554	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
106066	chr18	9107101	9108130	+	0	NA	intron (NM_021074, intron 1 of 7)	intron (NM_021074, intron 1 of 7)	4916	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
60472	chr13	41132221	41133430	+	0	NA	promoter-TSS (NR_120423)	promoter-TSS (NR_120423)	-23	NM_152903	89890		NM_152903	ENSG00000165572	KBTBD6	-	kelch repeat and BTB domain containing 6	protein-coding
220327	chr8	98941921	98943280	+	0	NA	promoter-TSS (NM_001256312)	promoter-TSS (NM_001256312)	10	NM_001256312	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
139286	chr2	219509121	219510430	+	0	NA	Intergenic	Intergenic	-4707	NM_182847	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
147735	chr20	62395701	62397130	+	0	NA	intron (NM_031215, intron 2 of 9)	intron (NM_031215, intron 2 of 9)	9312	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
74324	chr15	58457371	58457800	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	25594	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
220243	chr8	97259971	97260250	+	0	NA	intron (NR_125390, intron 2 of 2)	intron (NR_125390, intron 2 of 2)	17818	NM_033512	85453		NM_033512	ENSG00000180543	TSPYL5	-	TSPY like 5	protein-coding
105801	chr18	2915371	2915730	+	0	NA	3' UTR (NM_032048, exon 8 of 8)	3' UTR (NM_032048, exon 8 of 8)	31073	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
142652	chr20	5819001	5819400	+	0	NA	intron (NM_001303478, intron 3 of 3)	LTR45B|LTR|ERV1	68799	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
163618	chr3	52006251	52006550	+	0	NA	Intergenic	Intergenic	-10505	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
157184	chr22	43060271	43060430	+	0	NA	intron (NR_027779, intron 8 of 11)	LTR16|LTR|ERVL	21765	NR_125362	100506679		NR_125362	ENSG00000230319	TTLL1-AS1	-	TTLL1 antisense RNA 1	ncRNA
11954	chr1	93904121	93905600	+	0	NA	intron (NM_002061, intron 1 of 6)	intron (NM_002061, intron 1 of 6)	4570	NM_002061	2730		NM_002061	ENSG00000023909	GCLM	GLCLR	glutamate-cysteine ligase modifier subunit	protein-coding
33398	chr10	118241351	118241450	+	0	NA	Intergenic	Intergenic	100924	NM_001134672	63877		NM_022063	ENSG00000165669	FAM204A	C10orf84|bA319I23.1	family with sequence similarity 204 member A	protein-coding
183250	chr5	76408871	76409430	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	5865	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
131699	chr2	97740601	97741480	+	0	NA	Intergenic	LTR14B|LTR|ERVK	7740	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
184730	chr5	109656821	109657230	+	0	NA	Intergenic	Intergenic	-32341	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
201697	chr6	149648261	149649550	+	0	NA	promoter-TSS (NM_001204076)	promoter-TSS (NM_001204076)	-101	NM_001204076	11104		NM_007044	ENSG00000186625	KATNA1	-	katanin catalytic subunit A1	protein-coding
224829	chr9	26956111	26957100	+	0	NA	promoter-TSS (NR_121605)	promoter-TSS (NR_121605)	193	NM_025103	80173		NM_025103	ENSG00000096872	IFT74	BBS22|CCDC2|CMG-1|CMG1|JBTS40|SPGF58	intraflagellar transport 74	protein-coding
77654	chr15	85503551	85504030	+	0	NA	intron (NM_007200, intron 2 of 36)	L2c|LINE|L2	-116160	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
160292	chr3	27358921	27359450	+	0	NA	intron (NM_199347, intron 2 of 24)	AluSx|SINE|Alu	10198	NM_199347	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
196682	chr6	44697401	44697600	+	0	NA	Intergenic	Intergenic	-145619	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
232401	chr9	135994671	135995430	+	0	NA	Intergenic	L1MB5|LINE|L1	-33677	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
32662	chr10	103854301	103854850	+	0	NA	intron (NM_014631, intron 1 of 13)	intron (NM_014631, intron 1 of 13)	831	NM_014631	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
142902	chr20	17968151	17970450	+	0	NA	promoter-TSS (NM_152227)	promoter-TSS (NM_152227)	282	NM_001310339	92667		NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
100638	chr17	63675901	63676500	+	0	NA	intron (NM_001363768, intron 7 of 16)	intron (NM_001363768, intron 7 of 16)	23925	NM_030576	80774		NM_030576	ENSG00000136490	LIMD2	-	LIM domain containing 2	protein-coding
106098	chr18	9151951	9152250	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	14537	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
88921	chr16	87822521	87822780	+	0	NA	Intergenic	Intergenic	12010	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
115336	chr19	15150321	15150750	+	0	NA	Intergenic	L2a|LINE|L2	-24749	NM_006844	10994		NM_006844	ENSG00000105135	ILVBL	209L8|AHAS|HACL1L|HACL2|ILV2H	ilvB acetolactate synthase like	protein-coding
133990	chr2	130830001	130830200	+	0	NA	Intergenic	AluSx3|SINE|Alu	-6814	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
116864	chr19	18636021	18639180	+	0	NA	intron (NM_001345984, intron 1 of 3)	intron (NM_001345984, intron 1 of 3)	572	NM_001345982	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
220570	chr8	100805851	100806350	+	0	NA	Intergenic	Intergenic	-84012	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
177141	chr4	108120571	108120730	+	0	NA	intron (NM_016269, intron 3 of 11)	Charlie1a|DNA|hAT-Charlie	46147	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
135161	chr2	157593151	157593250	+	0	NA	intron (NM_001111032, intron 1 of 7)	intron (NM_001111032, intron 1 of 7)	4360	NM_001111031	130399		NM_145259	ENSG00000123612	ACVR1C	ACVRLK7|ALK7	activin A receptor type 1C	protein-coding
49233	chr12	19273671	19274240	+	0	NA	intron (NM_001256470, intron 10 of 31)	MIR|SINE|MIR	68630	NM_001256787	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
191825	chr6	14748771	14749100	+	0	NA	Intergenic	Intergenic	-463481	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
52368	chr12	55659721	55660080	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-21836	NM_152637	196410		NM_152637	ENSG00000170439	TMT1B	ALDI|METTL7B	thiol methyltransferase 1B	protein-coding
129148	chr2	65441871	65442030	+	0	NA	Intergenic	Intergenic	-9351	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
36705	chr11	8912921	8913500	+	0	NA	intron (NR_045417, intron 2 of 4)	AluSz|SINE|Alu	2021	NM_020642	56672		NM_020642	ENSG00000166452	AKIP1	BCA3|C11orf17	A-kinase interacting protein 1	protein-coding
160127	chr3	20041201	20042050	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	1179	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
121173	chr19	46428451	46429250	+	0	NA	Intergenic	CpG	-15286	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
20360	chr1	197916001	197916930	+	0	NA	promoter-TSS (NM_001370213)	promoter-TSS (NM_001370213)	-907	NM_020204	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
10537	chr1	66970651	66971130	+	0	NA	exon (NM_001077703, exon 9 of 15)	exon (NM_001077703, exon 9 of 15)	40634	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
176751	chr4	101613351	101613450	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	-177207	NM_001127507	55024		NM_017935	ENSG00000153064	BANK1	BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding
53692	chr12	68491701	68491900	+	0	NA	Intergenic	L1MB5|LINE|L1	-40316	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
125056	chr2	9617921	9619100	+	0	NA	intron (NM_006826, intron 2 of 5)	AluJb|SINE|Alu	12487	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
154530	chr22	36144951	36145830	+	0	NA	intron (NM_145640, intron 2 of 2)	intron (NM_145640, intron 2 of 2)	15365	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
144531	chr20	35712601	35712800	+	0	NA	intron (NM_184234, intron 12 of 16)	intron (NM_184234, intron 12 of 16)	13295	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
45137	chr11	117193501	117194500	+	0	NA	intron (NM_001040455, intron 24 of 25)	intron (NM_001040455, intron 24 of 25)	-5294	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
195753	chr6	40328671	40328900	+	0	NA	Intergenic	Intergenic	27221	NR_038887	401260		NM_001001705	ENSG00000226070	LINC00951	-	long intergenic non-protein coding RNA 951	ncRNA
209005	chr7	74273551	74273850	+	0	NA	Intergenic	AluJr|SINE|Alu	-15707	NM_032421	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
213412	chr7	137934951	137937050	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	-3012	NM_001318246	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
144816	chr20	36772051	36772350	+	0	NA	intron (NM_001145315, intron 1 of 10)	intron (NM_001145315, intron 1 of 10)	1551	NM_001145316	79980		NM_024918	ENSG00000149636	DSN1	C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3	DSN1 component of MIS12 kinetochore complex	protein-coding
33156	chr10	112519201	112519400	+	0	NA	intron (NM_001365710, intron 3 of 7)	intron (NM_001365710, intron 3 of 7)	-71697	NM_001351082	64429		NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|DHHC6|ZNF376	zinc finger DHHC-type palmitoyltransferase 6	protein-coding
20395	chr1	198174251	198174830	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	17542	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
147869	chr20	62822671	62823500	+	0	NA	intron (NM_001853, intron 10 of 31)	AluJo|SINE|Alu	6035	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
71766	chr15	21153971	21154230	+	0	NA	Intergenic	REP522|Satellite|telo	143729	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
203858	chr7	1458721	1461130	+	0	NA	promoter-TSS (NM_182924)	promoter-TSS (NM_182924)	-455	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
70068	chr14	100145801	100146130	+	0	NA	3' UTR (NM_206918, exon 3 of 3)	3' UTR (NM_206918, exon 3 of 3)	13680	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
181209	chr5	39163201	39163480	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	56223	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
251	chr1	912601	913230	+	0	NA	Intergenic	L2b|LINE|L2	6777	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
50230	chr12	46233101	46233400	+	0	NA	intron (NM_001278387, intron 4 of 17)	AluJr4|SINE|Alu	33266	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
77333	chr15	82519421	82519930	+	0	NA	promoter-TSS (NR_111962)	promoter-TSS (NR_111962)	85	NR_111962	642402		NR_111962		GOLGA6L17P	GOLGA6L21P	golgin A6 family like 17, pseudogene	pseudo
239316	chrY	17527371	17527530	+	0	NA	Intergenic	L1MA2|LINE|L1	26492	NR_028084	100302526		NR_028084		FAM41AY2	-	family with sequence similarity 41 member A, Y-linked 2	ncRNA
161972	chr3	46296401	46296800	+	0	NA	Intergenic	Intergenic	54140	NM_178329	1232		NM_001837	ENSG00000183625	CCR3	C C CKR3|CC-CKR-3|CD193|CKR 3|CKR3|CMKBR3	C-C motif chemokine receptor 3	protein-coding
152319	chr22	20361351	20361650	+	0	NA	Intergenic	CpG	22587	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
112399	chr19	6112751	6113050	+	0	NA	Intergenic	AluSz|SINE|Alu	-2400	NM_134433	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
195904	chr6	41727821	41728080	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	5660	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
22238	chr1	212607801	212610350	+	0	NA	intron (NM_001206488, intron 1 of 3)	CpG-2202	314	NM_001206484	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
80413	chr16	2607571	2607880	+	0	NA	intron (NR_015441, intron 1 of 3)	MIRb|SINE|MIR	4341	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
126905	chr2	32447251	32447550	+	0	NA	intron (NM_016252, intron 21 of 73)	SVA_E|Retroposon|SVA	-84753	NR_030285	693143		NR_030285	ENSG00000207653	MIR558	MIRN558|hsa-mir-558	microRNA 558	ncRNA
124844	chr2	7748571	7749340	+	0	NA	Intergenic	Intergenic	150700	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
5929	chr1	26858121	26858380	+	0	NA	TTS (NM_032283)	TTS (NM_032283)	-4899	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
6797	chr1	30824071	30824830	+	0	NA	promoter-TSS (NR_146732)	promoter-TSS (NR_146732)	-202	NR_146732	105378622		NR_146732	ENSG00000223382	LINC01778	-	long intergenic non-protein coding RNA 1778	ncRNA
81880	chr16	11677151	11677700	+	0	NA	3' UTR (NM_003498, exon 2 of 2)	3' UTR (NM_003498, exon 2 of 2)	8970	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
58279	chr12	130042271	130042430	+	0	NA	promoter-TSS (NR_024457)	promoter-TSS (NR_024457)	-8	NR_024457	100190940		NR_024457	ENSG00000214039	LINC02418	-	long intergenic non-protein coding RNA 2418	ncRNA
168273	chr3	141477221	141477480	+	0	NA	Intergenic	Intergenic	-9677	NM_001303246	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
195654	chr6	37923401	37923600	+	0	NA	intron (NM_021943, intron 1 of 5)	Tigger3b|DNA|TcMar-Tigger	103773	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
35440	chr11	1446051	1447180	+	0	NA	intron (NM_001256630, intron 12 of 19)	intron (NM_001256630, intron 12 of 19)	34271	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
155742	chr22	39169751	39170100	+	0	NA	Intergenic	Intergenic	-17245	NM_175709	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
126655	chr2	28999771	28999930	+	0	NA	intron (NM_199280, intron 4 of 19)	L2|LINE|L2	18552	NM_001321538	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
233140	chr9	137158621	137159330	+	0	NA	intron (NM_007327, intron 8 of 19)	intron (NM_007327, intron 8 of 19)	10295	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
74968	chr15	63830151	63831650	+	0	NA	intron (NM_003922, intron 1 of 77)	intron (NM_003922, intron 1 of 77)	3048	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
119889	chr19	41545471	41545970	+	0	NA	Intergenic	Intergenic	-3798	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
229998	chr9	126876071	126876230	+	0	NA	intron (NM_001099270, intron 1 of 1)	(TTCC)n|Simple_repeat|Simple_repeat	15511	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
52677	chr12	56361671	56362230	+	0	NA	exon (NM_001638, exon 2 of 2)	exon (NM_001638, exon 2 of 2)	907	NM_001638	319		NM_001638	ENSG00000175336	APOF	Apo-F|LTIP	apolipoprotein F	protein-coding
22989	chr1	226103101	226103700	+	0	NA	Intergenic	AluYf1|SINE|Alu	19825	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
91658	chr17	5514571	5514730	+	0	NA	3' UTR (NM_033007, exon 15 of 15)	3' UTR (NM_033007, exon 15 of 15)	-13644	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
133646	chr2	127046001	127046280	+	0	NA	Intergenic	Intergenic	35925	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
180600	chr5	16335851	16336030	+	0	NA	Intergenic	L1PA2|LINE|L1	105162	NR_104625	101929505		NR_104625	ENSG00000248150	LINC02150	-	long intergenic non-protein coding RNA 2150	ncRNA
188161	chr5	150443271	150443830	+	0	NA	3' UTR (NM_001025070, exon 5 of 5)	3' UTR (NM_001025070, exon 5 of 5)	6189	NM_005617	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
109539	chr19	865751	867180	+	0	NA	Intergenic	Intergenic	6801	NM_001317335	1675		NM_001928	ENSG00000197766	CFD	ADIPSIN|ADN|DF|PFD	complement factor D	protein-coding
90683	chr17	1722751	1723450	+	0	NA	intron (NM_001163673, intron 1 of 9)	intron (NM_001163673, intron 1 of 9)	-1604	NM_001163811	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
104708	chr17	81547121	81547750	+	0	NA	exon (NM_025161, exon 5 of 9)	exon (NM_025161, exon 5 of 9)	4918	NR_033338	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
121720	chr19	47694051	47694150	+	0	NA	intron (NM_015711, intron 7 of 14)	(CCCT)n|Simple_repeat|Simple_repeat	-19322	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
5345	chr1	25264021	25264400	+	0	NA	intron (NR_135788, intron 1 of 3)	THE1B-int|LTR|ERVL-MaLR	3715	NR_135777	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
74094	chr15	52787751	52787850	+	0	NA	intron (NM_004498, intron 1 of 1)	intron (NM_004498, intron 1 of 1)	2536	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
115760	chr19	16328901	16329800	+	0	NA	TTS (NM_016270)	TTS (NM_016270)	4524	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
223943	chr9	971901	972100	+	0	NA	Intergenic	CpG	-4655	NM_021240	58524		NM_021240	ENSG00000064218	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
179182	chr4	173171101	173171380	+	0	NA	intron (NM_001375601, intron 1 of 8)	intron (NM_001375601, intron 1 of 8)	-1588	NR_134241	101930370		NR_134241	ENSG00000245213	GALNT7-DT	-	GALNT7 divergent transcript	ncRNA
145410	chr20	41692771	41694330	+	0	NA	Intergenic	LTR91|LTR|ERVL	-75173	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
115491	chr19	15377251	15377350	+	0	NA	intron (NM_005858, intron 1 of 13)	intron (NM_005858, intron 1 of 13)	2487	NM_005858	10270		NM_005858	ENSG00000105127	AKAP8	AKAP 95|AKAP-8|AKAP-95|AKAP95	A-kinase anchoring protein 8	protein-coding
96437	chr17	40190301	40190750	+	0	NA	exon (NM_001303533, exon 7 of 15)	exon (NM_001303533, exon 7 of 15)	-3072	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
155411	chr22	38394621	38395530	+	0	NA	intron (NR_002821, intron 1 of 4)	intron (NR_002821, intron 1 of 4)	3840	NM_001289912	102800317		NM_001289912	ENSG00000283900	TPTEP2-CSNK1E	LOC400927-CSNK1E	TPTEP2-CSNK1E readthrough	protein-coding
184398	chr5	98905951	98906400	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-22387	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
126532	chr2	28563721	28563980	+	0	NA	intron (NM_153021, intron 18 of 57)	intron (NM_153021, intron 18 of 57)	-2507	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
180950	chr5	35129921	35130400	+	0	NA	intron (NM_000949, intron 1 of 9)	intron (NM_000949, intron 1 of 9)	-12038	NM_001204314	5618		NM_000949	ENSG00000113494	PRLR	HPRL|MFAB|RI-PRLR|hPRLrI	prolactin receptor	protein-coding
33028	chr10	110779401	110779800	+	0	NA	intron (NM_001134363, intron 1 of 13)	MER21B|LTR|ERVL	91304	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
174225	chr4	37803301	37803850	+	0	NA	Intergenic	Intergenic	-23111	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
58759	chr12	132660171	132660330	+	0	NA	intron (NM_006231, intron 25 of 48)	intron (NM_006231, intron 25 of 48)	27092	NM_006231	5426		NM_006231	ENSG00000177084	POLE	CRCS12|FILS|IMAGEI|POLE1	DNA polymerase epsilon, catalytic subunit	protein-coding
187013	chr5	139757901	139758630	+	0	NA	Intergenic	Intergenic	-12042	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
163992	chr3	53155871	53156030	+	0	NA	Intergenic	Intergenic	-5259	NM_006254	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
155597	chr22	38768671	38769850	+	0	NA	Intergenic	Intergenic	-13262	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
115517	chr19	15428201	15428600	+	0	NA	exon (NM_001371603, exon 4 of 9)	exon (NM_001371603, exon 4 of 9)	4361	NM_001330395	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
140539	chr2	233250821	233252380	+	0	NA	promoter-TSS (NM_001190267)	promoter-TSS (NM_001190267)	29	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
182184	chr5	56737021	56737550	+	0	NA	Intergenic	Intergenic	35586	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
64825	chr14	35050651	35051150	+	0	NA	intron (NM_173607, intron 1 of 4)	intron (NM_173607, intron 1 of 4)	4628	NM_173607	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
96955	chr17	42192271	42192930	+	0	NA	exon (NM_001142623, exon 5 of 10)	exon (NM_001142623, exon 5 of 10)	1894	NM_001142623	84514		NM_032484	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
45339	chr11	118224501	118225650	+	0	NA	promoter-TSS (NM_001286570)	promoter-TSS (NM_001286570)	-64	NM_001286570	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
41331	chr11	65915451	65916130	+	0	NA	Intergenic	Intergenic	3272	NM_031450	83638		NM_031450	ENSG00000175573	C11orf68	BLES03|P5326	chromosome 11 open reading frame 68	protein-coding
238088	chrX	136268351	136268780	+	0	NA	Intergenic	Intergenic	-12083	NM_001173516	79649		NM_024597	ENSG00000129680	MAP7D3	MDP3	MAP7 domain containing 3	protein-coding
166859	chr3	123446951	123447050	+	0	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	2090	NM_001378259	111		NM_183357	ENSG00000173175	ADCY5	AC5|DSKOD|FDFM	adenylate cyclase 5	protein-coding
83263	chr16	23959251	23959730	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	123507	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
235003	chrX	39856801	39857250	+	0	NA	Intergenic	Intergenic	19464	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
234405	chrX	16726651	16726750	+	0	NA	intron (NR_033181, intron 1 of 8)	PABL_A-int|LTR|ERV1	7088	NR_033181	94056		NM_032796	ENSG00000169895	SYAP1	BSTA|PRO3113	synapse associated protein 1	protein-coding
70994	chr14	104721771	104722380	+	0	NA	3' UTR (NM_001031714, exon 22 of 22)	3' UTR (NM_001031714, exon 22 of 22)	-2154	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
3779	chr1	16696451	16697100	+	0	NA	intron (NR_026567, intron 9 of 10)	CpG	15520	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
213741	chr7	140403621	140405080	+	0	NA	intron (NM_001008749, intron 1 of 3)	intron (NM_001008749, intron 1 of 3)	292	NM_001008749	401409		NM_001008749	ENSG00000146955	RAB19	RAB19B	RAB19, member RAS oncogene family	protein-coding
123193	chr19	52542621	52543580	+	0	NA	intron (NM_001039886, intron 2 of 4)	intron (NM_001039886, intron 2 of 4)	15391	NM_001321424	388558		NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
59634	chr13	28135621	28135880	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2795	NM_175854	255967		NM_175854	ENSG00000152520	PAN3	-	poly(A) specific ribonuclease subunit PAN3	protein-coding
158863	chr3	9845201	9845600	+	0	NA	Intergenic	AluSx|SINE|Alu	-1341	NM_001351737	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
131970	chr2	100113951	100114250	+	0	NA	intron (NM_002285, intron 1 of 23)	intron (NM_002285, intron 1 of 23)	-8517	NM_001025108	3899		NM_002285	ENSG00000144218	AFF3	KINS|LAF4|MLLT2-like	ALF transcription elongation factor 3	protein-coding
34606	chr10	133269551	133270980	+	0	NA	intron (NM_001109, intron 16 of 22)	CpG	6603	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
24717	chr1	247389901	247390700	+	0	NA	Intergenic	Intergenic	-25873	NM_001243133	114548		NM_004895	ENSG00000162711	NLRP3	AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1	NLR family pyrin domain containing 3	protein-coding
231018	chr9	129576901	129577280	+	0	NA	Intergenic	L2c|LINE|L2	-31794	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
133679	chr2	127079601	127079880	+	0	NA	intron (NM_139345, intron 1 of 15)	L2b|LINE|L2	2325	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
235309	chrX	42739421	42740080	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	38413	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
105307	chr17	82527621	82527880	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	8018	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
203677	chr7	1016071	1017530	+	0	NA	intron (NR_146964, intron 1 of 4)	intron (NR_146964, intron 1 of 4)	6226	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
30481	chr10	79246601	79246800	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-100769	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
139764	chr2	230008121	230008480	+	0	NA	intron (NM_174899, intron 3 of 3)	MIR3|SINE|MIR	60624	NM_152527	151473		NM_152527	ENSG00000163053	SLC16A14	MCT14	solute carrier family 16 member 14	protein-coding
142535	chr20	5065771	5066130	+	0	NA	Intergenic	Intergenic	47126	NM_001009923	29058		NM_014145	ENSG00000089063	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
9060	chr1	44824371	44824550	+	0	NA	intron (NM_001166292, intron 19 of 22)	intron (NM_001166292, intron 19 of 22)	15978	NM_001136537	149478		NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding
136617	chr2	178914251	178914730	+	0	NA	intron (NM_173648, intron 7 of 23)	intron (NM_173648, intron 7 of 23)	-107067	NM_001256850	7273		NM_003319	ENSG00000155657	TTN	CMD1G|CMH9|CMPD4|CMYP5|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD	titin	protein-coding
178726	chr4	152846721	152847100	+	0	NA	intron (NM_001025593, intron 2 of 7)	intron (NM_001025593, intron 2 of 7)	66956	NM_001025595	27236		NM_014447	ENSG00000164144	ARFIP1	HSU52521	ADP ribosylation factor interacting protein 1	protein-coding
148117	chr20	63441901	63443930	+	0	NA	intron (NM_001382235, intron 4 of 16)	(CATCAC)n|Simple_repeat|Simple_repeat	29740	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
206619	chr7	35849371	35849700	+	0	NA	intron (NM_001788, intron 2 of 12)	MER1B|DNA|hAT-Charlie	48316	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
98161	chr17	46052301	46052500	+	0	NA	intron (NM_015443, intron 6 of 14).2	AluSx1|SINE|Alu	53150	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
40350	chr11	63960121	63960380	+	0	NA	Intergenic	Intergenic	-14370	NM_004074	1351		NM_004074	ENSG00000176340	COX8A	COX|COX8|COX8-2|COX8L|MC4DN15|VIII|VIII-L	cytochrome c oxidase subunit 8A	protein-coding
138542	chr2	207532321	207533150	+	0	NA	intron (NR_163946, intron 1 of 8)	intron (NR_163946, intron 1 of 8)	2773	NM_134442	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123342	chr19	53853821	53854080	+	0	NA	Intergenic	Intergenic	-11678	NM_001290193	91663		NM_138373	ENSG00000179820	MYADM	SB135	myeloid associated differentiation marker	protein-coding
80849	chr16	3502801	3503000	+	0	NA	intron (NM_015041, intron 1 of 11)	intron (NM_015041, intron 1 of 11)	1896	NM_015041	23059		NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
51948	chr12	53745651	53745950	+	0	NA	Intergenic	Intergenic	6035	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
220821	chr8	102814301	102814920	+	0	NA	Intergenic	Intergenic	7788	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
37425	chr11	17349121	17349380	+	0	NA	Intergenic	L3|LINE|CR1	-2550	NM_001202439	374383		NM_001009913	ENSG00000188211	NCR3LG1	B7-H6|B7H6|DKFZp686O24166	natural killer cell cytotoxicity receptor 3 ligand 1	protein-coding
60734	chr13	44350821	44351130	+	0	NA	Intergenic	Intergenic	-22675	NM_001346980	387923		NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
141187	chr2	239298361	239299600	+	0	NA	intron (NM_006037, intron 2 of 26)	AluY|SINE|Alu	-6482	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
229612	chr9	123929171	123930650	+	0	NA	exon (NM_001352965, exon 1 of 21)	exon (NM_001352965, exon 1 of 21)	216	NM_001352968	57706		NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
185797	chr5	132422721	132423080	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	11971	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
63341	chr13	114023801	114024050	+	0	NA	intron (NM_001320822, intron 8 of 23).2	intron (NM_001320822, intron 8 of 23).2	-49849	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
24925	chr10	1098351	1098650	+	0	NA	intron (NM_014023, intron 9 of 13)	AluSc|SINE|Alu	-41796	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
77215	chr15	80996151	80996800	+	0	NA	TTS (NR_039739)	TTS (NR_039739)	998	NR_039739	100616181		NR_039739	ENSG00000265855	MIR4514	-	microRNA 4514	ncRNA
98868	chr17	48512951	48513530	+	0	NA	Intergenic	Intergenic	17771	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
37373	chr11	16758621	16759380	+	0	NA	TTS (NM_014267)	TTS (NM_014267)	20353	NM_014267	10944		NM_014267	ENSG00000110696	C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
82498	chr16	17382851	17383450	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	87810	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
19716	chr1	181097151	181097450	+	0	NA	Intergenic	Intergenic	8600	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
130290	chr2	84898421	84899280	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-6806	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
172843	chr4	3242971	3243630	+	0	NA	3' UTR (NM_002111, exon 67 of 67)	3' UTR (NM_002111, exon 67 of 67)	-1069	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
27081	chr10	27253671	27253830	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-1444	NR_003525	387646		NM_001006604	ENSG00000230445	LRRC37A6P	LRRC37E	leucine rich repeat containing 37 member A6, pseudogene	pseudo
139663	chr2	226839921	226840300	+	0	NA	intron (NM_001167608, intron 3 of 8)	intron (NM_001167608, intron 3 of 8)	4056	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
59353	chr13	24615551	24616150	+	0	NA	Intergenic	Intergenic	35642	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
55779	chr12	108616251	108616350	+	0	NA	Intergenic	Intergenic	15781	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
51771	chr12	53327421	53327680	+	0	NA	3' UTR (NM_001173467, exon 3 of 3)	3' UTR (NM_001173467, exon 3 of 3)	-5940	NM_001173466	8086		NM_015665	ENSG00000094914	AAAS	AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003	aladin WD repeat nucleoporin	protein-coding
170070	chr3	182911201	182911980	+	0	NA	intron (NM_014616, intron 28 of 29)	MIRb|SINE|MIR	68948	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
54746	chr12	93785221	93785900	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	-47737	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
187319	chr5	141624221	141624480	+	0	NA	TTS (NM_001355039)	TTS (NM_001355039)	-5350	NM_001079812	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
184366	chr5	97167451	97167750	+	0	NA	exon (NM_001159749, exon 8 of 8)	exon (NM_001159749, exon 8 of 8)	15647	NM_018343	55781		NM_018343	ENSG00000058729	RIOK2	RIO2	RIO kinase 2	protein-coding
210483	chr7	100160771	100161480	+	0	NA	intron (NM_024637, intron 3 of 3)	MIRb|SINE|MIR	-2402	NM_018275	55262		NM_018275	ENSG00000146826	TRAPPC14	C7orf43|MAP11|MCPH25	trafficking protein particle complex subunit 14	protein-coding
82105	chr16	14569301	14569500	+	0	NA	intron (NM_002582, intron 18 of 23)	intron (NM_002582, intron 18 of 23)	60860	NM_001134477	5073		NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding
207463	chr7	44610151	44610880	+	0	NA	intron (NM_001363523, intron 1 of 23)	AluSg|SINE|Alu	3888	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
95013	chr17	32387321	32387780	+	0	NA	Intergenic	AluSz|SINE|Alu	37393	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
206787	chr7	36765001	36765200	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-40551	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
26471	chr10	17645701	17646550	+	0	NA	intron (NM_001324286, intron 1 of 10)	intron (NM_001324286, intron 1 of 10)	1974	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
136789	chr2	181471001	181472350	+	0	NA	intron (NM_000885, intron 2 of 27)	intron (NM_000885, intron 2 of 27)	14289	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
81133	chr16	4395271	4395430	+	0	NA	intron (NM_001351729, intron 6 of 27)	intron (NM_001351729, intron 6 of 27)	20547	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
191792	chr6	14143871	14144030	+	0	NA	Intergenic	Intergenic	26178	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
20025	chr1	185308921	185309180	+	0	NA	exon (NM_006469, exon 4 of 15)	exon (NM_006469, exon 4 of 15)	8193	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
49315	chr12	21614421	21614930	+	0	NA	Intergenic	Intergenic	-9828	NM_021957	2998		NM_021957	ENSG00000111713	GYS2	-	glycogen synthase 2	protein-coding
205231	chr7	7987971	7988550	+	0	NA	intron (NM_138426, intron 1 of 7)	intron (NM_138426, intron 1 of 7)	19464	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
13195	chr1	112626271	112626430	+	0	NA	intron (NM_006135, intron 1 of 9)	FLAM_C|SINE|Alu	6518	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
183207	chr5	76170921	76171180	+	0	NA	intron (NM_014979, intron 2 of 12)	CpG	87667	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
36880	chr11	10623471	10624030	+	0	NA	intron (NM_001100163, intron 10 of 20)	intron (NM_001100163, intron 10 of 20)	28528	NM_001098579	10335		NM_130385	ENSG00000072952	IRAG1	IRAG|JAW1L|MRVI1	inositol 1,4,5-triphosphate receptor associated 1	protein-coding
147656	chr20	62232671	62233030	+	0	NA	non-coding (NR_160555, exon 2 of 4)	non-coding (NR_160555, exon 2 of 4)	4607	NR_160555	105369209		NR_160555	ENSG00000130703	LOC105369209	-	uncharacterized LOC105369209	ncRNA
131858	chr2	98697201	98697400	+	0	NA	intron (NM_012214, intron 2 of 15)	L1MD2|LINE|L1	-33827	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
85154	chr16	46401021	46401600	+	0	NA	Intergenic	Intergenic	167787	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
155579	chr22	38744851	38745400	+	0	NA	intron (NM_001199580, intron 9 of 18)	MLT1H|LTR|ERVL-MaLR	10341	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
178522	chr4	150960171	150960330	+	0	NA	intron (NM_001367550, intron 2 of 56)	L1MC5|LINE|L1	55017	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
1632	chr1	3770451	3770900	+	0	NA	intron (NM_152492, intron 11 of 11)	intron (NM_152492, intron 11 of 11)	-2074	NM_001379691	388588		NM_001163724	ENSG00000235169	SMIM1	Vel	small integral membrane protein 1 (Vel blood group)	protein-coding
41639	chr11	66479731	66481350	+	0	NA	promoter-TSS (NR_120586)	promoter-TSS (NR_120586)	106	NM_130443	10072		NM_005700	ENSG00000254986	DPP3	DPPIII	dipeptidyl peptidase 3	protein-coding
45631	chr11	118929401	118931550	+	0	NA	Intergenic	Intergenic	-4549	NM_001378213	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
138746	chr2	214811251	214812300	+	0	NA	intron (NR_110292, intron 1 of 3)	MLT1A|LTR|ERVL-MaLR	1546	NR_110292	101928103		NR_110292	ENSG00000229267	SNHG31	-	small nucleolar RNA host gene 31	ncRNA
13160	chr1	111743001	111743600	+	0	NA	intron (NR_038952, intron 1 of 1)	intron (NR_038952, intron 1 of 1)	3459	NR_038952	100506343		NR_038951	ENSG00000227811	INKA2-AS1	FAM212B-AS1	INKA2 antisense RNA 1	ncRNA
147906	chr20	62895801	62896130	+	0	NA	intron (NM_001193369, intron 8 of 15)	intron (NM_001193369, intron 8 of 15)	-13062	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
126113	chr2	25991371	25992030	+	0	NA	Intergenic	AluSx|SINE|Alu	-9203	NM_002254	3797		NM_002254	ENSG00000084731	KIF3C	-	kinesin family member 3C	protein-coding
9666	chr1	52690471	52690900	+	0	NA	intron (NM_023077, intron 2 of 2)	(ATTT)n|Simple_repeat|Simple_repeat	7662	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
50954	chr12	49538501	49539880	+	0	NA	5' UTR (NM_012284, exon 1 of 15)	5' UTR (NM_012284, exon 1 of 15)	160	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
74102	chr15	52796121	52796580	+	0	NA	Intergenic	Intergenic	-6014	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
13408	chr1	113972801	113973630	+	0	NA	exon (NM_001369807, exon 16 of 16)	exon (NM_001369807, exon 16 of 16)	-6176	NM_001286353	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
35942	chr11	2480851	2481030	+	0	NA	intron (NM_181798, intron 1 of 15)	L1MC4|LINE|L1	19486	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
190794	chr6	788171	788330	+	0	NA	Intergenic	Intergenic	-80248	NR_110853	101927691		NR_110853		LOC101927691	-	uncharacterized LOC101927691	ncRNA
201990	chr6	152303271	152303630	+	0	NA	intron (NM_033071, intron 90 of 145)	intron (NM_033071, intron 90 of 145)	-77080	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
10251	chr1	64019871	64020030	+	0	NA	intron (NM_001083592, intron 2 of 6)	MLT1C|LTR|ERVL-MaLR	92255	NR_110666	101927034		NR_110665	ENSG00000223949	ROR1-AS1	-	ROR1 antisense RNA 1	ncRNA
78799	chr15	99475801	99476000	+	0	NA	Intergenic	Intergenic	-89517	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
54542	chr12	92138101	92138930	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	3198	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
201646	chr6	149475571	149475930	+	0	NA	intron (NM_207360, intron 1 of 5)	intron (NM_207360, intron 1 of 5)	9264	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
163274	chr3	50307471	50308030	+	0	NA	intron (NM_153281, intron 2 of 5)	MER4-int|LTR|ERV1	-4176	NM_153282	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
52171	chr12	54296251	54296550	+	0	NA	promoter-TSS (NM_006163)	promoter-TSS (NM_006163)	-621	NM_006163	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
224410	chr9	14876251	14876350	+	0	NA	intron (NR_163239, intron 1 of 37)	L1PA3|LINE|L1	34128	NM_001370063	158326		NM_144966	ENSG00000164946	FREM1	BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2	FRAS1 related extracellular matrix 1	protein-coding
196339	chr6	43176621	43177150	+	0	NA	intron (NM_001292001, intron 4 of 6)	MIR3|SINE|MIR	4489	NM_001292001	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
101140	chr17	65043321	65043600	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluJb|SINE|Alu	12314	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
112871	chr19	7607651	7607950	+	0	NA	intron (NM_001080429, intron 5 of 18)	intron (NM_001080429, intron 5 of 18)	-9639	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
96089	chr17	39612351	39612450	+	0	NA	Intergenic	Intergenic	-4480	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
19512	chr1	175235121	175235380	+	0	NA	Intergenic	L1PBa1|LINE|L1	-42263	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
180878	chr5	33841121	33841380	+	0	NA	intron (NM_030955, intron 2 of 23)	intron (NM_030955, intron 2 of 23)	50740	NM_001324511	81792		NM_030955	ENSG00000151388	ADAMTS12	PRO4389	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein-coding
132823	chr2	110571851	110572280	+	0	NA	intron (NM_001384363, intron 1 of 22).2	L1M3|LINE|L1	4835	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
18097	chr1	160692501	160693150	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK-int|LTR|ERVK	18997	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
236162	chrX	64755451	64755550	+	0	NA	Intergenic	L1M1|LINE|L1	220950	NM_018684	55906		NM_018684	ENSG00000126970	ZC4H2	HCA127|KIAA1166|MCS|MRXS4|WRWF|WRWFFR|WWS	zinc finger C4H2-type containing	protein-coding
28839	chr10	62437621	62438100	+	0	NA	intron (NM_199450, intron 3 of 4)	intron (NM_199450, intron 3 of 4)	-62733	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
200543	chr6	136260121	136260530	+	0	NA	3' UTR (NM_001077440, exon 12 of 12)	3' UTR (NM_001077440, exon 12 of 12)	-10014	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
91857	chr17	7224771	7225130	+	0	NA	TTS (NM_004422)	TTS (NM_004422)	-1571	NR_029896	442898		NR_029896	ENSG00000199053	MIR324	MIRN324|hsa-mir-324|mir-324	microRNA 324	ncRNA
76173	chr15	72968601	72968800	+	0	NA	Intergenic	Intergenic	-83763	NM_002499	4756		NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
82733	chr16	21283621	21283880	+	0	NA	intron (NM_001888, intron 1 of 9)	CpG	-5460	NM_001376256	1428		NM_001888	ENSG00000103316	CRYM	DFNA40|THBP	crystallin mu	protein-coding
73917	chr15	50873821	50874300	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	-34623	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
52878	chr12	57189951	57190050	+	0	NA	intron (NM_002332, intron 42 of 88)	intron (NM_002332, intron 42 of 88)	-4504	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
19388	chr1	174024471	174024830	+	0	NA	Intergenic	AluSc|SINE|Alu	-2293	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
7349	chr1	32761401	32761800	+	0	NA	intron (NM_001369553, intron 1 of 6)	MIRb|SINE|MIR	-4027	NM_001198973	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
166283	chr3	112496051	112497130	+	0	NA	intron (NM_001085357, intron 1 of 3)	intron (NM_001085357, intron 1 of 3)	2882	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
190693	chr6	180101	180900	+	0	NA	TTS (NR_126020)	TTS (NR_126020)	24984	NR_126020	285766		NM_001010885	ENSG00000263667	LINC03066	-	long intergenic non-protein coding RNA 3066	ncRNA
193988	chr6	31764761	31764930	+	0	NA	TTS (NM_001039651).6	TTS (NM_001039651).6	743	NR_126423	104413891		NR_126423		SAPCD1-AS1	C6orf26-AS1	SAPCD1 antisense RNA 1	ncRNA
54054	chr12	75977071	75977230	+	0	NA	Intergenic	Intergenic	54626	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
129167	chr2	68121001	68121600	+	0	NA	Intergenic	Intergenic	36227	NM_001256476	116143		NM_138458	ENSG00000243667	DNAAF10	WDR92	dynein axonemal assembly factor 10	protein-coding
20870	chr1	202129171	202129550	+	0	NA	3' UTR (NM_004767, exon 2 of 2)	3' UTR (NM_004767, exon 2 of 2)	6443	NM_004767	9283		NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2|ETBRLP2	G protein-coupled receptor 37 like 1	protein-coding
204025	chr7	1923351	1924080	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	16856	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
7977	chr1	37861471	37861830	+	0	NA	non-coding (NR_158628, exon 25 of 25)	non-coding (NR_158628, exon 25 of 25)	-2058	NM_005955	4520		NM_005955	ENSG00000188786	MTF1	MTF-1|ZRF	metal regulatory transcription factor 1	protein-coding
97479	chr17	43778071	43779830	+	0	NA	promoter-TSS (NM_004090)	promoter-TSS (NM_004090)	27	NM_004090	1845		NM_004090	ENSG00000108861	DUSP3	VHR	dual specificity phosphatase 3	protein-coding
205423	chr7	16653071	16653230	+	0	NA	intron (NM_001159767, intron 1 of 11)	intron (NM_001159767, intron 1 of 11)	6969	NM_014038	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
191596	chr6	12049151	12049450	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	36988	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
199260	chr6	111852421	111853100	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	20311	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
230456	chr9	128192771	128193750	+	0	NA	intron (NM_001131015, intron 1 of 17)	intron (NM_001131015, intron 1 of 17)	-1156	NM_001257975	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
81705	chr16	11248051	11248150	+	0	NA	Intergenic	MIR|SINE|MIR	8082	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
24209	chr1	236101201	236101400	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-36210	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
166912	chr3	125001821	125002570	+	0	NA	intron (NM_020733, intron 10 of 16)	intron (NM_020733, intron 10 of 16)	53802	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
117720	chr19	29467951	29468050	+	0	NA	intron (NR_040029, intron 1 of 9)	LTR16A2|LTR|ERVL	-57418	NM_001384641	342865		NM_001146339	ENSG00000187135	VSTM2B	-	V-set and transmembrane domain containing 2B	protein-coding
216985	chr8	23100751	23101050	+	0	NA	intron (NR_046173, intron 3 of 3)	MER65C|LTR|ERV1	-2021	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
200270	chr6	132669701	132669930	+	0	NA	Intergenic	Intergenic	-10633	NM_138327	134864		NM_138327	ENSG00000146399	TAAR1	TA1|TAR1|TRAR1	trace amine associated receptor 1	protein-coding
11230	chr1	88885751	88886450	+	0	NA	intron (NM_001514, intron 2 of 6)	MIR|SINE|MIR	5467	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
154362	chr22	33519301	33519500	+	0	NA	intron (NM_133642, intron 6 of 14)	intron (NM_133642, intron 6 of 14)	52862	NM_001378631	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
206802	chr7	36864971	36865750	+	0	NA	intron (NM_014800, intron 20 of 21)	intron (NM_014800, intron 20 of 21)	54072	NR_031604	100302113		NR_031604	ENSG00000221325	MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA
168718	chr3	150743451	150743750	+	0	NA	intron (NM_005067, intron 1 of 1)	intron (NM_005067, intron 1 of 1)	-4615	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
124434	chr19	58478951	58479330	+	0	NA	intron (NM_001304453, intron 3 of 5)	intron (NM_001304453, intron 3 of 5)	1961	NM_001304453	55663		NM_017908	ENSG00000083838	ZNF446	ZKSCAN20|ZSCAN30|ZSCAN52	zinc finger protein 446	protein-coding
196033	chr6	42036601	42037000	+	0	NA	intron (NM_001287434, intron 1 of 4)	Charlie1|DNA|hAT-Charlie	12094	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
60970	chr13	46606971	46607280	+	0	NA	intron (NM_015116, intron 1 of 18)	MER74B|LTR|ERVL	53955	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
68288	chr14	77133621	77134080	+	0	NA	exon (NM_001364172, exon 3 of 3)	exon (NM_001364172, exon 3 of 3)	6894	NM_001364172	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
159455	chr3	13932871	13933030	+	0	NA	promoter-TSS (NR_036481)	promoter-TSS (NR_036481)	-106	NR_036481	100132526		NR_036481	ENSG00000290338	FGD5P1	-	FYVE, RhoGEF and PH domain containing 5 pseudogene 1	pseudo
126736	chr2	30196901	30198250	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	10141	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
161788	chr3	45055651	45055750	+	0	NA	Intergenic	MER34B|LTR|ERV1	25557	NM_001308394	7123		NM_003278	ENSG00000163815	CLEC3B	MCDR4|TN|TNA	C-type lectin domain family 3 member B	protein-coding
175031	chr4	52714701	52715500	+	0	NA	TTS (NR_024031)	TTS (NR_024031)	1851	NR_003016	677810		NR_003016	ENSG00000212588	SNORA26	HBI-6	small nucleolar RNA, H/ACA box 26	snoRNA
17005	chr1	156015051	156015350	+	0	NA	intron (NM_003145, intron 3 of 5)	intron (NM_003145, intron 3 of 5)	5751	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
94517	chr17	29447621	29447950	+	0	NA	intron (NM_025142, intron 1 of 17)	AluSx1|SINE|Alu	56860	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
229809	chr9	125623101	125623450	+	0	NA	intron (NM_024117, intron 4 of 10)	SVA_F|Retroposon|SVA	83933	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
79393	chr16	662621	663030	+	0	NA	exon (NM_145294, exon 34 of 41)	exon (NM_145294, exon 34 of 41)	-5258	NM_001352287	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
73725	chr15	45169201	45170050	+	0	NA	intron (NM_001301170, intron 3 of 3)	intron (NM_001301170, intron 3 of 3)	11582	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
16142	chr1	153668921	153669380	+	0	NA	intron (NM_001267809, intron 3 of 13)	AluSx1|SINE|Alu	1843	NM_004515	3608		NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
134245	chr2	135049721	135050180	+	0	NA	Intergenic	AluSx|SINE|Alu	-2342	NM_001172435	22930		NM_012233	ENSG00000115839	RAB3GAP1	MARTS2|P130|RAB3GAP|RAB3GAP130|WARBM1	RAB3 GTPase activating protein catalytic subunit 1	protein-coding
5723	chr1	26409351	26409450	+	0	NA	Intergenic	Intergenic	-1417	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
175304	chr4	68299651	68299750	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	50390	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
191568	chr6	11947001	11947380	+	0	NA	Intergenic	Intergenic	54054	NR_125853	101928253		NR_125853	ENSG00000225102	LOC101928253	-	uncharacterized LOC101928253	ncRNA
68939	chr14	91388271	91389130	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	29120	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
133697	chr2	127218071	127218230	+	0	NA	intron (NM_001367502, intron 1 of 8)	intron (NM_001367502, intron 1 of 8)	2149	NM_001367502	339761		NM_001001665	ENSG00000186684	CYP27C1	-	cytochrome P450 family 27 subfamily C member 1	protein-coding
203699	chr7	1037401	1037950	+	0	NA	intron (NM_032350, intron 2 of 4)	SVA_F|Retroposon|SVA	-6871	NM_001303473	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
2504	chr1	9694621	9694880	+	0	NA	intron (NM_001350234, intron 2 of 23)	AluJb|SINE|Alu	3283	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
42090	chr11	67507341	67509030	+	0	NA	promoter-TSS (NM_005851)	promoter-TSS (NM_005851)	-23	NM_001271849	10263		NM_005851	ENSG00000167797	CDK2AP2	DOC-1R|DOC1R|p14	cyclin dependent kinase 2 associated protein 2	protein-coding
64070	chr14	22563421	22563680	+	0	NA	Intergenic	AluSp|SINE|Alu	-6488	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
51537	chr12	52350171	52350330	+	0	NA	Intergenic	Intergenic	14372	NM_001300810	3891		NM_002283	ENSG00000135443	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
47293	chr12	1660101	1661040	+	0	NA	promoter-TSS (NR_037422)	promoter-TSS (NR_037422)	-190	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
99240	chr17	49693221	49693680	+	0	NA	Intergenic	L2b|LINE|L2	14514	NM_001278784	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
185779	chr5	132397821	132398180	+	0	NA	Intergenic	L1PA6|LINE|L1	-12929	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
88174	chr16	81713221	81714130	+	0	NA	Intergenic	Intergenic	48321	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
198672	chr6	107934901	107935100	+	0	NA	intron (NM_007214, intron 1 of 20)	SVA_D|Retroposon|SVA	23208	NM_007214	11231		NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L	SEC63 homolog, protein translocation regulator	protein-coding
2736	chr1	10666021	10666450	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	130411	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
18129	chr1	160738001	160738600	+	0	NA	promoter-TSS (NM_001282595)	promoter-TSS (NM_001282595)	-757	NM_001282594	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
43758	chr11	86182951	86183650	+	0	NA	Intergenic	Intergenic	-61084	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
46496	chr11	128349801	128350330	+	0	NA	Intergenic	Intergenic	141299	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
63649	chr14	20973471	20973630	+	0	NA	Intergenic	Intergenic	-16430	NM_001029991	64745		NM_022734	ENSG00000165792	METTL17	METT11D1	methyltransferase like 17	protein-coding
42065	chr11	67483901	67484700	+	0	NA	intron (NM_001302959, intron 1 of 5)	intron (NM_001302959, intron 1 of 5)	784	NM_001302959	9049		NM_003977	ENSG00000110711	AIP	ARA9|FKBP16|FKBP37|PITA1|SMTPHN|XAP-2|XAP2	aryl hydrocarbon receptor interacting protein	protein-coding
193549	chr6	30613551	30613850	+	0	NA	intron (NM_001376195, intron 2 of 19).6	intron (NM_001376195, intron 2 of 19).6	3543	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
89559	chr16	89249451	89249750	+	0	NA	Intergenic	L1MB4|LINE|L1	31897	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
129239	chr2	68354821	68355080	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-10332	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
142427	chr20	3905051	3905550	+	0	NA	intron (NM_001324191, intron 2 of 7)	intron (NM_001324191, intron 2 of 7)	-12194	NR_029519	406896		NR_029519	ENSG00000199024	MIR103A2	MIR103-2|MIRN103-2|mir-103a-2	microRNA 103a-2	ncRNA
57694	chr12	122850221	122851200	+	0	NA	intron (NM_001303099, intron 5 of 17)	intron (NM_001303099, intron 5 of 17)	15253	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
128929	chr2	64527901	64528100	+	0	NA	intron (NM_203437, intron 1 of 9)	intron (NM_203437, intron 1 of 9)	2487	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
117173	chr19	19349371	19350100	+	0	NA	intron (NM_015329, intron 16 of 18)	intron (NM_015329, intron 16 of 18)	28906	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
160974	chr3	37171251	37171350	+	0	NA	intron (NM_001348298, intron 2 of 21)	intron (NM_001348298, intron 2 of 21)	3282	NM_006309	9209		NM_006309	ENSG00000093167	LRRFIP2	HUFI-2	LRR binding FLII interacting protein 2	protein-coding
3973	chr1	18825701	18826100	+	0	NA	Intergenic	(CATCAC)n|Simple_repeat|Simple_repeat	33760	NM_152232	80834		NM_152232	ENSG00000179002	TAS1R2	GPR71|T1R2|TR2	taste 1 receptor member 2	protein-coding
87946	chr16	79590551	79590650	+	0	NA	Intergenic	Intergenic	10137	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
62414	chr13	99295701	99295900	+	0	NA	exon (NM_004951, exon 2 of 2)	exon (NM_004951, exon 2 of 2)	11599	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
137121	chr2	191013391	191015250	+	0	NA	promoter-TSS (NM_001384880)	promoter-TSS (NM_001384880)	-70	NM_139266	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
30790	chr10	84360671	84361450	+	0	NA	intron (NM_001284241, intron 1 of 2)	L1MCc|LINE|L1	32471	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
18327	chr1	161184851	161186430	+	0	NA	3' UTR (NM_005099, exon 9 of 9)	3' UTR (NM_005099, exon 9 of 9)	-7672	NM_001199873	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
143189	chr20	24784171	24784330	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-165019	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
236934	chrX	98429771	98430030	+	0	NA	Intergenic	L1PA2|LINE|L1	-865365	NR_125391	10824		NR_125391	ENSG00000236256	DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
210158	chr7	98255051	98255730	+	0	NA	Intergenic	MER41B|LTR|ERV1	-3158	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
36133	chr11	3121101	3121300	+	0	NA	intron (NM_020896, intron 5 of 21)	AluSx1|SINE|Alu	44110	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
76008	chr15	71199501	71199700	+	0	NA	intron (NM_024817, intron 2 of 16)	(TG)n|Simple_repeat|Simple_repeat	-10541	NR_120351	101929196		NR_120348	ENSG00000259964	THSD4-AS1	-	THSD4 antisense RNA 1	ncRNA
145829	chr20	45798821	45799750	+	0	NA	intron (NM_052951, intron 4 of 12)	L2|LINE|L2	7331	NM_052951	116092		NM_052951	ENSG00000101457	DNTTIP1	C20orf167|Tdif1|dJ447F3.4	deoxynucleotidyltransferase terminal interacting protein 1	protein-coding
190288	chr5	179584771	179585330	+	0	NA	intron (NM_001040452, intron 7 of 17).2	AluSc8|SINE|Alu	18691	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
71562	chr14	106367001	106367200	+	0	NA	Intergenic	Intergenic	79426	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
98667	chr17	47840121	47841880	+	0	NA	intron (NM_138355, intron 1 of 7)	CpG	273	NM_001145023	90507		NM_138355	ENSG00000141295	SCRN2	Ses2	secernin 2	protein-coding
25192	chr10	5655101	5655300	+	0	NA	intron (NR_024581, intron 1 of 4)	intron (NR_024581, intron 1 of 4)	11395	NR_024581	79754		NM_024701	ENSG00000196372	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
166698	chr3	120567601	120568100	+	0	NA	Intergenic	Intergenic	-28486	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
106232	chr18	11922001	11922400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13883	NR_040242	65258		NM_023075	ENSG00000154889	MPPE1	Cdc1|PGAP5	metallophosphoesterase 1	protein-coding
72166	chr15	29118701	29119100	+	0	NA	TTS (NM_001379685)	TTS (NM_001379685)	48242	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
43278	chr11	75803021	75803560	+	0	NA	Intergenic	Intergenic	11507	NR_144531	100506113		NR_144531	ENSG00000255507	UVRAG-DT	-	UVRAG divergent transcript	ncRNA
92269	chr17	8058621	8058900	+	0	NA	Intergenic	AluSp|SINE|Alu	19701	NM_001039131	247		NM_001141	ENSG00000179593	ALOX15B	15-LOX-2	arachidonate 15-lipoxygenase type B	protein-coding
30765	chr10	84327721	84329590	+	0	NA	promoter-TSS (NM_001351292)	promoter-TSS (NM_001351292)	66	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
126360	chr2	27435051	27435350	+	0	NA	exon (NM_001321359, exon 7 of 19)	exon (NM_001321359, exon 7 of 19)	6569	NM_001321362	29959		NM_013392	ENSG00000115216	NRBP1	BCON3|MADM|MUDPNP|NRBP	nuclear receptor binding protein 1	protein-coding
26300	chr10	14974351	14974450	+	0	NA	intron (NR_147060, intron 1 of 2)	HERVE-int|LTR|ERV1	15012	NM_001080836	644890		NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding
131677	chr2	97712701	97714460	+	0	NA	promoter-TSS (NM_001378594)	promoter-TSS (NM_001378594)	4	NM_001079	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
201679	chr6	149517321	149518180	+	0	NA	intron (NM_139126, intron 10 of 12)	intron (NM_139126, intron 10 of 12)	28293	NM_139126	85313		NM_139126	ENSG00000131013	PPIL4	HDCME13P	peptidylprolyl isomerase like 4	protein-coding
61616	chr13	73701101	73701300	+	0	NA	intron (NM_007249, intron 7 of 7)	intron (NM_007249, intron 7 of 7)	136956	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
180907	chr5	34191971	34192430	+	0	NA	non-coding (NR_157803, exon 1 of 1)	non-coding (NR_157803, exon 1 of 1)	2619	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
90644	chr17	1664151	1664600	+	0	NA	intron (NM_006445, intron 24 of 42)	L1MEc|LINE|L1	-14509	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
98378	chr17	46490821	46491230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-21685	NM_001006607	474170		NM_001006607	ENSG00000238083	LRRC37A2	LRRC37	leucine rich repeat containing 37 member A2	protein-coding
37863	chr11	33776571	33777130	+	0	NA	Intergenic	AluSq|SINE|Alu	2151	NR_120550	101928440		NR_120550	ENSG00000254508	FBXO3-DT	FBXO3-AS1	FBXO3 divergent transcript	ncRNA
112520	chr19	6500901	6501100	+	0	NA	intron (NM_001289130, intron 3 of 3)	MIR|SINE|MIR	1309	NM_006087	10382		NM_006087	ENSG00000104833	TUBB4A	DYT4|TUBB4|beta-5	tubulin beta 4A class IVa	protein-coding
150426	chr21	42413251	42413750	+	0	NA	exon (NM_018961, exon 5 of 15)	exon (NM_018961, exon 5 of 15)	9598	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
228022	chr9	95852701	95853100	+	0	NA	intron (NR_023390, intron 1 of 2)	intron (NR_023390, intron 1 of 2)	-22791	NM_001375293	375748		NM_020207	ENSG00000182150	ERCC6L2	BMFS2|C9orf102|HEBO|RAD26L|SR278	ERCC excision repair 6 like 2	protein-coding
202021	chr6	152897821	152898280	+	0	NA	Intergenic	Intergenic	84991	NM_012177	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
1609	chr1	3664051	3664350	+	0	NA	intron (NM_001204185, intron 1 of 12)	intron (NM_001204185, intron 1 of 12)	11635	NM_001204187	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
114875	chr19	13876671	13877030	+	0	NA	promoter-TSS (NM_001098622)	promoter-TSS (NM_001098622)	-399	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
173626	chr4	12903951	12904050	+	0	NA	Intergenic	L1PA3|LINE|L1	580340	NM_001017979	9364		NM_004249	ENSG00000157869	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
180657	chr5	17527321	17527650	+	0	NA	Intergenic	AluSx|SINE|Alu	-35409	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
95196	chr17	35220221	35220480	+	0	NA	Intergenic	AluSz|SINE|Alu	-22722	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
114340	chr19	12162601	12164100	+	0	NA	intron (NM_001348013, intron 1 of 2)	CpG	254	NM_003437	7695		NM_003437	ENSG00000196646	ZNF136	pHZ-20	zinc finger protein 136	protein-coding
208777	chr7	73565821	73566800	+	0	NA	Intergenic	AluJr|SINE|Alu	-8620	NM_001197244	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
138779	chr2	216023101	216023380	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	-9689	NM_018000	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
155546	chr22	38715351	38715980	+	0	NA	intron (NM_004286, intron 2 of 11)	L2b|LINE|L2	9721	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
71291	chr14	105290421	105291550	+	0	NA	intron (NM_001242787, intron 1 of 17)	intron (NM_001242787, intron 1 of 17)	-9789	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
75299	chr15	65211951	65212450	+	0	NA	promoter-TSS (NM_003613)	promoter-TSS (NM_003613)	-727	NM_003613	8483		NM_003613	ENSG00000138615	CILP	CILP-1|CILP1|HsT18872	cartilage intermediate layer protein	protein-coding
536	chr1	1231221	1232930	+	0	NA	promoter-TSS (NM_016176)	promoter-TSS (NM_016176)	-74	NM_016547	51150		NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
165065	chr3	71457071	71457230	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	84939	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
239425	chrY	56683901	56684730	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-269940	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
193576	chr6	30675501	30675700	+	0	NA	TTS (NM_001134870).7	TTS (NM_001134870).7	-2547	NM_001164239	8449		NM_003587	ENSG00000204560	DHX16	DBP2|DDX16|NMOAS|PRO2014|PRP8|PRPF2|Prp2	DEAH-box helicase 16	protein-coding
164463	chr3	59783551	59783980	+	0	NA	intron (NM_001354590, intron 7 of 8)	MER20|DNA|hAT-Charlie	-125268	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
172433	chr4	1866401	1866600	+	0	NA	Intergenic	Intergenic	-4893	NM_001042424	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
218641	chr8	56993301	56994580	+	0	NA	promoter-TSS (NM_017813)	promoter-TSS (NM_017813)	-73	NM_017813	54928		NM_017813	ENSG00000104331	BPNT2	GPAPP|IMP 3|IMP-3|IMPA3|IMPAD1	3'(2'), 5'-bisphosphate nucleotidase 2	protein-coding
59018	chr13	20191451	20192030	+	0	NA	intron (NM_004004, intron 1 of 1)	intron (NM_004004, intron 1 of 1)	1198	NM_004004	2706		NM_004004	ENSG00000165474	GJB2	BAPS|CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein beta 2	protein-coding
46285	chr11	124865101	124865600	+	0	NA	promoter-TSS (NM_022370)	promoter-TSS (NM_022370)	-82	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
140728	chr2	234444721	234445500	+	0	NA	intron (NR_146988, intron 2 of 2)	intron (NR_146988, intron 2 of 2)	9485	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
10771	chr1	77282951	77283300	+	0	NA	promoter-TSS (NM_012093)	promoter-TSS (NM_012093)	38	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
42320	chr11	68476271	68476430	+	0	NA	intron (NM_001352362, intron 2 of 24)	SVA_C|Retroposon|SVA	15598	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
14048	chr1	120761871	120762230	+	0	NA	intron (NR_157049, intron 1 of 4)	MIRb|SINE|MIR	38111	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
15933	chr1	151817101	151817930	+	0	NA	intron (NM_005060, intron 2 of 10)	intron (NM_005060, intron 2 of 10)	8581	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
112377	chr19	6048701	6049200	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	61550	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
185746	chr5	132110351	132111350	+	0	NA	Intergenic	Intergenic	37061	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
132241	chr2	102419301	102419500	+	0	NA	intron (NM_003853, intron 1 of 11)	intron (NM_003853, intron 1 of 11)	610	NM_003853	8807		NM_003853	ENSG00000115607	IL18RAP	ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB	interleukin 18 receptor accessory protein	protein-coding
65788	chr14	54567601	54568730	+	0	NA	intron (NM_015589, intron 2 of 12)	intron (NM_015589, intron 2 of 12)	553	NM_001161576	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
64463	chr14	24250321	24250580	+	0	NA	intron (NM_000359, intron 14 of 14)	intron (NM_000359, intron 14 of 14)	-7776	NM_012461	26277		NM_012461	ENSG00000092330	TINF2	DKCA3|TIN2	TERF1 interacting nuclear factor 2	protein-coding
7925	chr1	37491901	37492100	+	0	NA	non-coding (NR_073090, exon 9 of 9)	non-coding (NR_073090, exon 9 of 9)	8994	NR_049844	100847010		NR_049844	ENSG00000263675	MIR5581	-	microRNA 5581	ncRNA
228944	chr9	113376221	113378480	+	0	NA	promoter-TSS (NM_031219)	promoter-TSS (NM_031219)	-364	NM_001371923	81932		NM_031219	ENSG00000119431	HDHD3	2810435D12Rik|C9orf158	haloacid dehalogenase like hydrolase domain containing 3	protein-coding
161294	chr3	39346871	39347630	+	0	NA	Intergenic	LTR19C|LTR|ERV1	17541	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
95358	chr17	35856771	35857130	+	0	NA	intron (NM_152781, intron 11 of 14).2	L2c|LINE|L2	11941	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
107625	chr18	48938671	48939180	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	3882	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
120403	chr19	43766441	43767300	+	0	NA	3' UTR (NM_002250, exon 9 of 9)	3' UTR (NM_002250, exon 9 of 9)	-11908	NM_019108	56006		NM_019108	ENSG00000105771	SMG9	C19orf61|F17127_1|HBMS|NEDITPO	SMG9 nonsense mediated mRNA decay factor	protein-coding
119253	chr19	39502651	39503480	+	0	NA	intron (NM_016941, intron 4 of 7)	CpG-14474	4118	NM_203486	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
4462	chr1	21344701	21346350	+	0	NA	promoter-TSS (NM_001113348)	promoter-TSS (NM_001113348)	-21	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
103018	chr17	76968951	76969830	+	0	NA	promoter-TSS (NR_136417)	promoter-TSS (NR_136417)	-191	NR_136417	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
136910	chr2	189657451	189659350	+	0	NA	Intergenic	Intergenic	-2999	NM_001353494	110599588		NM_001353493	ENSG00000286053	ASDURF	ASNSD1|ASNSD1-SEP|NS3TP1	ASNSD1 upstream open reading frame	protein-coding
68106	chr14	75331651	75331950	+	0	NA	Intergenic	Intergenic	37396	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
153864	chr22	30245821	30247080	+	0	NA	non-coding (NR_148946, exon 1 of 1)	non-coding (NR_148946, exon 1 of 1)	240	NR_148946	91370		NM_052856	ENSG00000268812	LIF-AS2	TP53LC08	LIF antisense RNA 2	ncRNA
65123	chr14	44928801	44929100	+	0	NA	3' UTR (NM_001308112, exon 5 of 5)	3' UTR (NM_001308112, exon 5 of 5)	-17033	NR_110050	101927418		NR_110050	ENSG00000258949	LOC101927418	-	uncharacterized LOC101927418	ncRNA
203970	chr7	1568351	1569390	+	0	NA	intron (NM_001134340, intron 2 of 2)	AluSz|SINE|Alu	1162	NM_032302	84262		NM_032302	ENSG00000157778	PSMG3	C7orf48|PAC3	proteasome assembly chaperone 3	protein-coding
236078	chrX	56763701	56763900	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-26216	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
109728	chr19	1086701	1087050	+	0	NA	3' UTR (NM_001258328, exon 23 of 23)	3' UTR (NM_001258328, exon 23 of 23)	8500	NM_002695	5434		NM_002695	ENSG00000099817	POLR2E	RPABC1|RPB5|XAP4|hRPB25|hsRPB5	RNA polymerase II, I and III subunit E	protein-coding
23539	chr1	229204901	229205300	+	0	NA	Intergenic	Intergenic	-30299	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
128194	chr2	53958071	53958500	+	0	NA	intron (NM_014614, intron 1 of 46)	AluSx|SINE|Alu	12708	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
160038	chr3	18434001	18434200	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	4636	NM_001131010	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
8559	chr1	41341971	41342380	+	0	NA	Intergenic	Intergenic	-19259	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
10948	chr1	84164271	84164930	+	0	NA	promoter-TSS (NM_001375574)	promoter-TSS (NM_001375574)	-40	NM_001242861	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
79023	chr16	62901	63500	+	0	NA	intron (NM_022450, intron 4 of 17)	intron (NM_022450, intron 4 of 17)	9372	NM_024571	79622		NM_024571	ENSG00000161981	SNRNP25	C16orf33	small nuclear ribonucleoprotein U11/U12 subunit 25	protein-coding
4735	chr1	23370921	23371180	+	0	NA	non-coding (NR_033690, exon 1 of 1)	non-coding (NR_033690, exon 1 of 1)	-1214	NM_001077195	80818		NM_030634	ENSG00000125945	ZNF436	ZNF|Zfp46	zinc finger protein 436	protein-coding
23768	chr1	232965171	232965330	+	0	NA	intron (NM_001329452, intron 3 of 3)	intron (NM_001329452, intron 3 of 3)	14408	NR_138027	84284		NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase|THEP1	nucleoside-triphosphatase, cancer-related	protein-coding
225816	chr9	37752151	37752250	+	0	NA	Intergenic	(CCCCTA)n|Simple_repeat|Simple_repeat	-1603	NM_001286952	158234		NM_144964	ENSG00000165275	TRMT10B	RG9MTD3|bA3J10.9	tRNA methyltransferase 10B	protein-coding
69227	chr14	92751901	92752480	+	0	NA	Intergenic	MIR|SINE|MIR	-3563	NM_001008530	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
166666	chr3	120078871	120079800	+	0	NA	intron (NM_001146156, intron 1 of 10)	(AC)n|Simple_repeat|Simple_repeat	5313	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
73652	chr15	44709001	44709430	+	0	NA	Intergenic	L1ME1|LINE|L1	-2302	NM_004048	567		NM_004048	ENSG00000166710	B2M	IMD43	beta-2-microglobulin	protein-coding
48916	chr12	12615301	12615700	+	0	NA	intron (NM_001310, intron 1 of 3)	AluSc5|SINE|Alu	3624	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
105350	chr17	82636051	82636350	+	0	NA	intron (NM_019613, intron 2 of 9)	AluSx3|SINE|Alu	12244	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
181424	chr5	40800601	40801280	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-2745	NM_001355034	5562		NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPK alpha 1|AMPKa1	protein kinase AMP-activated catalytic subunit alpha 1	protein-coding
216492	chr8	20198621	20199330	+	0	NA	intron (NM_001693, intron 1 of 13)	intron (NM_001693, intron 1 of 13)	1594	NM_001693	526		NM_001693	ENSG00000147416	ATP6V1B2	ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2	ATPase H+ transporting V1 subunit B2	protein-coding
179205	chr4	173374101	173374400	+	0	NA	intron (NM_003864, intron 3 of 3)	intron (NM_003864, intron 3 of 3)	3296	NM_003864	8819		NM_003864	ENSG00000164105	SAP30	-	Sin3A associated protein 30	protein-coding
225531	chr9	35748601	35750330	+	0	NA	promoter-TSS (NM_020944)	promoter-TSS (NM_020944)	178	NM_001080496	9827		NM_014785	ENSG00000107185	RGP1	KIAA0258	RGP1 homolog, RAB6A GEF complex partner 1	protein-coding
22055	chr1	211257721	211261350	+	0	NA	promoter-TSS (NM_018254)	promoter-TSS (NM_018254)	169	NM_001136223	55758		NM_018254	ENSG00000117625	RCOR3	-	REST corepressor 3	protein-coding
97600	chr17	44117251	44117800	+	0	NA	5' UTR (NM_001015053, exon 2 of 27)	5' UTR (NM_001015053, exon 2 of 27)	1613	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
85214	chr16	47392171	47392400	+	0	NA	intron (NM_030790, intron 6 of 17)	L2a|LINE|L2	68778	NM_030790	81533		NM_030790	ENSG00000129636	ITFG1	2310047C21Rik|CDA08|LINKIN|LNKN-1|TIP	integrin alpha FG-GAP repeat containing 1	protein-coding
116278	chr19	17721671	17722080	+	0	NA	intron (NM_001308363, intron 2 of 6)	intron (NM_001308363, intron 2 of 6)	1719	NM_001308363	55201		NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule associated protein 1S	protein-coding
96550	chr17	40376321	40377080	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11963	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
120291	chr19	43461671	43462030	+	0	NA	intron (NM_014400, intron 4 of 4)	intron (NM_014400, intron 4 of 4)	3758	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
21646	chr1	206659671	206660200	+	0	NA	Intergenic	Intergenic	24399	NM_001004023	8444		NM_003582	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual specificity tyrosine phosphorylation regulated kinase 3	protein-coding
59226	chr13	23570121	23570580	+	0	NA	promoter-TSS (NM_001204459)	promoter-TSS (NM_001204459)	-20	NM_001204459	55504		NM_018647	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	TNF receptor superfamily member 19	protein-coding
239053	chrY	7279651	7280950	+	0	NA	intron (NR_028062, intron 1 of 7)	MLT1A0|LTR|ERVL-MaLR	6328	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
24671	chr1	247117701	247119280	+	0	NA	Intergenic	Intergenic	-6073	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
3728	chr1	16626871	16628000	+	0	NA	intron (NR_026752, intron 2 of 6)	intron (NR_026752, intron 2 of 6)	3471	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
132374	chr2	105767001	105767450	+	0	NA	intron (NM_001004722, intron 1 of 3)	(TGTCA)n|Simple_repeat|Simple_repeat	22162	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
163847	chr3	52482101	52482700	+	0	NA	TTS (NM_001276293)	TTS (NM_001276293)	-12938	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
195139	chr6	35687371	35688200	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	1130	NM_001145776	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
38824	chr11	47303221	47303500	+	0	NA	intron (NR_164842, intron 23 of 33)	AluY|SINE|Alu	-31250	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
19632	chr1	180176871	180177030	+	0	NA	intron (NM_001004128, intron 4 of 12)	intron (NM_001004128, intron 4 of 12)	22081	NM_002826	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
70564	chr14	102590671	102591000	+	0	NA	Intergenic	Intergenic	-1814	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
235362	chrX	44875901	44876700	+	0	NA	intron (NM_001291416, intron 2 of 28)	intron (NM_001291416, intron 2 of 28)	3112	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
58107	chr12	124771821	124772580	+	0	NA	Intergenic	Intergenic	67471	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
176472	chr4	89433951	89434600	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-126475	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
238125	chrX	136662901	136663200	+	0	NA	Intergenic	Intergenic	14892	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
102540	chr17	75828921	75829330	+	0	NA	intron (NM_199242, intron 30 of 31)	intron (NM_199242, intron 30 of 31)	15279	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
212041	chr7	114949371	114950150	+	0	NA	intron (NM_199072, intron 3 of 4)	L2c|LINE|L2	27606	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
68433	chr14	81437451	81437550	+	0	NA	Intergenic	Intergenic	-1035	NM_001366849	85439		NM_033104	ENSG00000140022	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
230820	chr9	129038251	129039280	+	0	NA	intron (NM_032809, intron 1 of 15)	intron (NM_032809, intron 1 of 15)	1831	NM_032809	84895		NM_032809	ENSG00000148343	MIGA2	C9orf54|FAM73B	mitoguardin 2	protein-coding
125313	chr2	10686951	10687050	+	0	NA	intron (NM_024894, intron 1 of 20)	L2a|LINE|L2	2975	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
22444	chr1	220776771	220776950	+	0	NA	intron (NM_001331042, intron 4 of 4)	intron (NM_001331042, intron 4 of 4)	-10053	NM_022746	64757		NM_022746	ENSG00000186205	MTARC1	MARC1|MOSC1	mitochondrial amidoxime reducing component 1	protein-coding
143265	chr20	25099471	25099830	+	0	NA	Intergenic	Intergenic	-17509	NM_001256271	30813		NM_014588	ENSG00000100987	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
10111	chr1	59046271	59047080	+	0	NA	intron (NR_110626, intron 2 of 2)	intron (NR_110626, intron 2 of 2)	26199	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
48846	chr12	12372051	12372350	+	0	NA	intron (NM_058169, intron 2 of 3)	AluSq2|SINE|Alu	15122	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
78547	chr15	92977471	92977830	+	0	NA	intron (NM_001271, intron 20 of 38)	intron (NM_001271, intron 20 of 38)	73251	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
91642	chr17	5436851	5437030	+	0	NA	intron (NM_001212, intron 2 of 5)	AluSg|SINE|Alu	2215	NM_001212	708		NM_001212	ENSG00000108561	C1QBP	COXPD33|GC1QBP|HABP1|SF2AP32|SF2p32|gC1Q-R|gC1qR|p32	complement C1q binding protein	protein-coding
10818	chr1	77900771	77900930	+	0	NA	intron (NM_144573, intron 1 of 12)	intron (NM_144573, intron 1 of 12)	-11311	NR_103535	374987		NM_199343	ENSG00000235927	NEXN-AS1	C1orf118	NEXN antisense RNA 1	ncRNA
129494	chr2	69620871	69621550	+	0	NA	intron (NM_001371577, intron 2 of 14)	AluSx|SINE|Alu	22528	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
53005	chr12	57517051	57517230	+	0	NA	TTS (NM_004990)	TTS (NM_004990)	2119	NR_030346	693201		NR_030346	ENSG00000208028	MIR616	MIRN616|hsa-mir-616	microRNA 616	ncRNA
176565	chr4	98640571	98640930	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	17861	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
36355	chr11	3920021	3920830	+	0	NA	intron (NM_001382571, intron 1 of 9)	L1MB7|LINE|L1	64363	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
121308	chr19	46743351	46743750	+	0	NA	intron (NM_001039877, intron 1 of 17)	MIRc|SINE|MIR	-2507	NM_024301	79147		NM_024301	ENSG00000181027	FKRP	FKTR|LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
41519	chr11	66264851	66265730	+	0	NA	intron (NM_001134774, intron 10 of 14)	intron (NM_001134774, intron 10 of 14)	-3349	NM_030981	81876		NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
45511	chr11	118694871	118695030	+	0	NA	Intergenic	Intergenic	-15300	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
31587	chr10	97348971	97349530	+	0	NA	Intergenic	AluY|SINE|Alu	-14521	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
104320	chr17	80938401	80939130	+	0	NA	intron (NM_020761, intron 24 of 33)	intron (NM_020761, intron 24 of 33)	32448	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
150782	chr21	43826001	43826700	+	0	NA	Intergenic	Intergenic	-13783	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
1323	chr1	2412071	2413900	+	0	NA	promoter-TSS (NM_153818)	promoter-TSS (NM_153818)	-421	NM_001374425	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
192196	chr6	17699301	17700100	+	0	NA	intron (NM_001278209, intron 1 of 22)	AluSz|SINE|Alu	-6430	NR_134616	105374952		NR_134616	ENSG00000272269	NUP153-AS1	-	NUP153 antisense RNA 1	ncRNA
111674	chr19	4257801	4258550	+	0	NA	intron (NM_018074, intron 4 of 7)	intron (NM_018074, intron 4 of 7)	11095	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
85722	chr16	56635151	56636450	+	0	NA	promoter-TSS (NR_036677)	promoter-TSS (NR_036677)	61	NR_036677	4498		NM_175622	ENSG00000290662	MT1JP	MT1|MT1J|MT1NP|MTB	metallothionein 1J, pseudogene	pseudo
97973	chr17	45254701	45255130	+	0	NA	intron (NM_152343, intron 4 of 4)	intron (NM_152343, intron 4 of 4)	6990	NR_110326	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
140357	chr2	232696171	232696330	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1081	NM_001103148	26058		NM_015575	ENSG00000204120	GIGYF2	GYF2|PARK11|PERQ2|PERQ3|TNRC15	GRB10 interacting GYF protein 2	protein-coding
90145	chr17	133871	134900	+	0	NA	Intergenic	TAR1|Satellite|telo	-3184	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
125019	chr2	9574851	9575350	+	0	NA	Intergenic	AluSz|SINE|Alu	-19270	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
208621	chr7	72966901	72967400	+	0	NA	promoter-TSS (NM_001317815)	promoter-TSS (NM_001317815)	-197	NM_001317815	378108		NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
25508	chr10	7243151	7243450	+	0	NA	intron (NM_001029880, intron 9 of 20)	intron (NM_001029880, intron 9 of 20)	-56516	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
222622	chr8	141084251	141084930	+	0	NA	Intergenic	Intergenic	-43999	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
36406	chr11	4084701	4084900	+	0	NA	intron (NM_001382567, intron 11 of 12)	intron (NM_001382567, intron 11 of 12)	-9885	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
71490	chr14	105989801	105990230	+	0	NA	Intergenic	Intergenic	-17746	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
180582	chr5	14868521	14869180	+	0	NA	intron (NM_054027, intron 1 of 11)	FLAM_C|SINE|Alu	2928	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
37203	chr11	14326101	14326500	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	32185	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
102273	chr17	75295001	75295200	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5651	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
117645	chr19	23762301	23763730	+	0	NA	promoter-TSS (NM_001355287)	promoter-TSS (NM_001355287)	11	NR_149351	388524		NM_001005472	ENSG00000288920	RPSA2	37LRP|67LR|LBP/p40|LRP/LR|LamR|RPSAP58|RPSA_30_1642	ribosomal protein SA 2	protein-coding
121971	chr19	48487551	48488530	+	0	NA	intron (NM_001080434, intron 15 of 15)	intron (NM_001080434, intron 15 of 15)	18671	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
216937	chr8	22864601	22865630	+	0	NA	intron (NM_001363233, intron 3 of 6)	CpG	-12857	NR_125433	101929237		NR_125433	ENSG00000248738	LOC101929237	-	uncharacterized LOC101929237	ncRNA
193451	chr6	30497551	30498130	+	0	NA	Intergenic	Intergenic	8331	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
32000	chr10	100971201	100971780	+	0	NA	Intergenic	Intergenic	-1039	NM_001203244	57715		NM_017893	ENSG00000095539	SEMA4G	-	semaphorin 4G	protein-coding
56830	chr12	120229701	120230200	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	20213	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
234579	chrX	19762851	19763350	+	0	NA	intron (NM_001353892, intron 2 of 17)	L1ME4b|LINE|L1	36673	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
93064	chr17	17495801	17497850	+	0	NA	promoter-TSS (NM_016084)	promoter-TSS (NM_016084)	-430	NM_001199989	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
135963	chr2	172089921	172090950	+	0	NA	TTS (NM_001038493)	TTS (NM_001038493)	4928	NM_178120	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
192168	chr6	17602121	17602550	+	0	NA	intron (NM_016255, intron 1 of 4)	AluSz6|SINE|Alu	2033	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
177943	chr4	138341771	138342130	+	0	NA	intron (NR_051987, intron 1 of 2)	LTR43B|LTR|ERV1	32239	NR_051987	100874047		NR_051987	ENSG00000251372	LINC00499	LINC00500	long intergenic non-protein coding RNA 499	ncRNA
104577	chr17	81381921	81382780	+	0	NA	intron (NR_164137, intron 1 of 3)	intron (NR_164137, intron 1 of 3)	2775	NR_164138	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
84340	chr16	30196451	30198150	+	0	NA	exon (NM_001015000, exon 4 of 5)	exon (NM_001015000, exon 4 of 5)	-1955	NM_177552	6818		NM_003166	ENSG00000261052	SULT1A3	HAST|HAST3|M-PST|ST1A3|ST1A3/ST1A4|ST1A4|ST1A5|STM|TL-PST	sulfotransferase family 1A member 3	protein-coding
87816	chr16	75576451	75576750	+	0	NA	intron (NM_007285, intron 3 of 3)	intron (NM_007285, intron 3 of 3)	10221	NM_007285	11345		NM_007285	ENSG00000034713	GABARAPL2	ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2	GABA type A receptor associated protein like 2	protein-coding
144859	chr20	36899921	36900250	+	0	NA	intron (NM_001363733, intron 13 of 15)	AluSx4|SINE|Alu	23947	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
44859	chr11	114166951	114167680	+	0	NA	intron (NM_001354752, intron 2 of 4)	(TC)n|Simple_repeat|Simple_repeat	-90491	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
71465	chr14	105865301	105865500	+	0	NA	Intergenic	Intergenic	-5847	NR_130466	100616422		NR_130466	ENSG00000264781	MIR4537	-	microRNA 4537	ncRNA
51617	chr12	52903301	52904580	+	0	NA	intron (NR_045962, intron 2 of 8)	CpG	1136	NM_002273	3856		NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
239359	chrY	19744171	19745210	+	0	NA	promoter-TSS (NM_004653)	promoter-TSS (NM_004653)	36	NM_004653	8284		NM_004653	ENSG00000012817	KDM5D	HY|HYA|JARID1D|SMCY	lysine demethylase 5D	protein-coding
225912	chr9	40122121	40122430	+	0	NA	Intergenic	Intergenic	-201296	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
57195	chr12	121456121	121456380	+	0	NA	intron (NM_001005366, intron 12 of 22)	intron (NM_001005366, intron 12 of 22)	-11898	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
109357	chr19	623151	623450	+	0	NA	intron (NM_005035, intron 6 of 20)	CpG-12898	10237	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
131721	chr2	97994801	97995400	+	0	NA	intron (NM_015348, intron 1 of 40)	intron (NM_015348, intron 1 of 40)	848	NM_015348	23505		NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
119748	chr19	41278901	41279300	+	0	NA	exon (NM_007040, exon 6 of 15)	exon (NM_007040, exon 6 of 15)	14019	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
94637	chr17	30101351	30101850	+	0	NA	intron (NM_198529, intron 22 of 22)	L2a|LINE|L2	-15207	NM_001261467	84081		NM_032141	ENSG00000126653	NSRP1	CCDC55|HSPC095|NEDSSBA|NSrp70	nuclear speckle splicing regulatory protein 1	protein-coding
225283	chr9	34460871	34461230	+	0	NA	intron (NM_012144, intron 1 of 19)	AluY|SINE|Alu	2245	NM_012144	27019		NM_012144	ENSG00000122735	DNAI1	CILD1|DIC1|ICS1|PCD|oda6	dynein axonemal intermediate chain 1	protein-coding
1116	chr1	2115021	2115550	+	0	NA	intron (NM_001033582, intron 1 of 14)	CpG	10569	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
161439	chr3	42025451	42025830	+	0	NA	Intergenic	Intergenic	-61560	NM_001349245	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
228208	chr9	97848701	97849880	+	0	NA	intron (NR_147055, intron 1 of 10)	intron (NR_147055, intron 1 of 10)	3790	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
152356	chr22	20462851	20464800	+	0	NA	intron (NR_033825, intron 3 of 5)	intron (NR_033825, intron 3 of 5)	-26000	NM_182895	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
176104	chr4	83009121	83009380	+	0	NA	intron (NM_001115007, intron 1 of 12)	intron (NM_001115007, intron 1 of 12)	1573	NM_194282	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
111773	chr19	4401701	4403500	+	0	NA	promoter-TSS (NM_005483)	promoter-TSS (NM_005483)	-40	NM_005483	10036		NM_005483	ENSG00000167670	CHAF1A	CAF-1|CAF1|CAF1B|CAF1P150|P150	chromatin assembly factor 1 subunit A	protein-coding
57160	chr12	121301971	121302130	+	0	NA	Intergenic	Intergenic	-3742	NM_153500	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
163525	chr3	51501351	51501450	+	0	NA	Intergenic	Intergenic	-1385	NM_001349169	9730		NM_014703	ENSG00000145041	DCAF1	RIP|VPRBP	DDB1 and CUL4 associated factor 1	protein-coding
57408	chr12	121831801	121832280	+	0	NA	3' UTR (NM_001353345, exon 17 of 17)	3' UTR (NM_001353345, exon 17 of 17)	26819	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
8264	chr1	39818351	39818780	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	29589	NR_135805	101929536		NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
24520	chr1	244827371	244827930	+	0	NA	Intergenic	AluSz|SINE|Alu	-7656	NM_001312871	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
92809	chr17	16012071	16013280	+	0	NA	intron (NM_017775, intron 7 of 9)	AluSp|SINE|Alu	12851	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
140965	chr2	237923501	237924050	+	0	NA	Intergenic	Intergenic	-43170	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
147802	chr20	62647721	62648180	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	5447	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
181262	chr5	39231801	39232400	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	-12537	NM_001349333	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
99441	chr17	50127351	50127450	+	0	NA	intron (NM_174920, intron 1 of 10)	AluSp|SINE|Alu	2760	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
151032	chr21	44564821	44565180	+	0	NA	intron (NM_144991, intron 2 of 11)	L1M4b|LINE|L1	-6205	NM_198696	386682		NM_198696	ENSG00000212935	KRTAP10-3	KAP10.3|KAP18-3|KAP18.3|KRTAP10.3|KRTAP18-3|KRTAP18.3	keratin associated protein 10-3	protein-coding
109851	chr19	1221521	1222080	+	0	NA	intron (NM_000455, intron 6 of 9)	intron (NM_000455, intron 6 of 9)	16022	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
60069	chr13	33639751	33639850	+	0	NA	intron (NM_001243476, intron 3 of 17)	MER57B2|LTR|ERV1	36994	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
158155	chr22	50194651	50194750	+	0	NA	intron (NM_001378762, intron 4 of 9)	intron (NM_001378762, intron 4 of 9)	4113	NM_001320487	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
223141	chr8	143512151	143513200	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	-6427	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
61536	chr13	60267501	60268430	+	0	NA	non-coding (NR_047022, exon 1 of 3)	non-coding (NR_047022, exon 1 of 3)	139	NR_047022	100874169		NR_047022		LINC00434	-	long intergenic non-protein coding RNA 434	ncRNA
192072	chr6	16654421	16655480	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	105234	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
59703	chr13	29593071	29593230	+	0	NA	intron (NM_003045, intron 1 of 12)	intron (NM_003045, intron 1 of 12)	2538	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
62132	chr13	95682051	95682350	+	0	NA	intron (NM_006260, intron 1 of 11)	intron (NM_006260, intron 1 of 11)	5061	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
113793	chr19	10561601	10562000	+	0	NA	exon (NM_023008, exon 5 of 19)	exon (NM_023008, exon 5 of 19)	4210	NM_023008	65095		NM_023008	ENSG00000129347	KRI1	-	KRI1 homolog	protein-coding
153713	chr22	29285971	29286650	+	0	NA	intron (NM_001163287, intron 6 of 8)	AluYc3|SINE|Alu	18042	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
88675	chr16	85687201	85687700	+	0	NA	intron (NM_016095, intron 2 of 4)	intron (NM_016095, intron 2 of 4)	1504	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
127218	chr2	38597501	38597950	+	0	NA	intron (NM_138394, intron 1 of 12)	AluSg7|SINE|Alu	5203	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
51952	chr12	53749451	53749630	+	0	NA	TTS (NR_104333)	TTS (NR_104333)	2295	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
5610	chr1	26119901	26120100	+	0	NA	intron (NM_152835, intron 2 of 2)	L2b|LINE|L2	8176	NM_152835	149420		NM_152835	ENSG00000175087	PDIK1L	CLIK1L|STK35L2	PDLIM1 interacting kinase 1 like	protein-coding
179211	chr4	173494171	173494750	+	0	NA	intron (NM_001329597, intron 1 of 3)	intron (NM_001329597, intron 1 of 3)	24684	NM_001329597	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
188963	chr5	163347571	163347800	+	0	NA	Intergenic	Intergenic	-89886	NM_001364022	900		NM_004060	ENSG00000113328	CCNG1	CCNG	cyclin G1	protein-coding
226065	chr9	61863571	61863980	+	0	NA	Intergenic	Intergenic	-1160	NR_144466	105379807		NR_144466		LOC105379807	-	uncharacterized LOC105379807	ncRNA
159023	chr3	10744151	10744450	+	0	NA	Intergenic	Intergenic	19909	NR_152730	285370		NR_027102	ENSG00000226567	LINC00606	-	long intergenic non-protein coding RNA 606	ncRNA
88714	chr16	85934151	85934250	+	0	NA	Intergenic	Intergenic	15853	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
89080	chr16	88467401	88467900	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	-1268	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
109965	chr19	1388971	1389600	+	0	NA	intron (NM_001363602, intron 4 of 7)	intron (NM_001363602, intron 4 of 7)	5378	NM_001363602	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
210523	chr7	100226171	100227130	+	0	NA	intron (NR_166147, intron 2 of 4)	intron (NR_166147, intron 2 of 4)	7402	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
170414	chr3	185581201	185581600	+	0	NA	Intergenic	(CTTTT)n|Simple_repeat|Simple_repeat	-4895	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
166531	chr3	114721951	114722050	+	0	NA	intron (NM_001348801, intron 4 of 11)	L2a|LINE|L2	21525	NR_039959	100616166		NR_039959	ENSG00000264623	MIR4796	mir-4796	microRNA 4796	ncRNA
64969	chr14	36656021	36656800	+	0	NA	Intergenic	CpG	-1158	NM_006194	5083		NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
93998	chr17	22523271	22523460	+	0	NA	5' UTR (NM_001190452, exon 1 of 1)	5' UTR (NM_001190452, exon 1 of 1)	254	NM_001190452	100462977		NM_001190452		MTRNR2L1	HN1	MT-RNR2 like 1 (pseudogene)	pseudo
225666	chr9	36461081	36461900	+	0	NA	Intergenic	Intergenic	-60292	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
123991	chr19	55445401	55446230	+	0	NA	Intergenic	AluY|SINE|Alu	-2952	NM_001145176	729956		NM_175908	ENSG00000187902	SHISA7	CKAMP59	shisa family member 7	protein-coding
140851	chr2	237421421	237422130	+	0	NA	Intergenic	Intergenic	-7568	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
111120	chr19	3224201	3225480	+	0	NA	promoter-TSS (NR_033342)	promoter-TSS (NR_033342)	179	NM_001172673	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
14583	chr1	145190271	145190530	+	0	NA	intron (NR_156690, intron 1 of 3)	AluSp|SINE|Alu	-22793	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
166816	chr3	122680041	122682080	+	0	NA	exon (NM_017554, exon 1 of 17)	exon (NM_017554, exon 1 of 17)	221	NM_017554	54625		NM_017554	ENSG00000173193	PARP14	ARTD8|BAL2|PARP-14|pART8	poly(ADP-ribose) polymerase family member 14	protein-coding
195267	chr6	36449001	36449650	+	0	NA	intron (NR_104481, intron 1 of 3)	LTR12|LTR|ERV1	6325	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
7654	chr1	35638421	35639180	+	0	NA	intron (NM_001199779, intron 1 of 5)	intron (NM_001199779, intron 1 of 5)	2726	NM_001199779	5690		NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome 20S subunit beta 2	protein-coding
125160	chr2	10033501	10033900	+	0	NA	Intergenic	L3b|LINE|CR1	9701	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
145938	chr20	46028671	46028830	+	0	NA	promoter-TSS (NM_020708)	promoter-TSS (NM_020708)	-465	NM_020708	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
230571	chr9	128539221	128539550	+	0	NA	intron (NM_001499, intron 13 of 13)	intron (NM_001499, intron 13 of 13)	-13202	NM_001375318	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
211626	chr7	106056871	106057650	+	0	NA	Intergenic	Intergenic	55052	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
214045	chr7	143361401	143363150	+	0	NA	promoter-TSS (NM_014690)	promoter-TSS (NM_014690)	-195	NM_001371253	9715		NM_014690	ENSG00000159784	FAM131B	-	family with sequence similarity 131 member B	protein-coding
150850	chr21	44065051	44066230	+	0	NA	intron (NM_003274, intron 7 of 22)	intron (NM_003274, intron 7 of 22)	-8684	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
15439	chr1	150295471	150295630	+	0	NA	intron (NM_031901, intron 2 of 2)	intron (NM_031901, intron 2 of 2)	1689	NM_031901	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
6068	chr1	27147721	27148430	+	0	NA	intron (NM_003047, intron 1 of 11)	MIR3|SINE|MIR	7050	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
215443	chr7	157760251	157760550	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	-94185	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
11431	chr1	89757271	89758330	+	0	NA	Intergenic	Intergenic	-63232	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
40700	chr11	64782871	64783480	+	0	NA	Intergenic	AluSz|SINE|Alu	-4633	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
12893	chr1	110346551	110347350	+	0	NA	TTS (NM_001201545)	TTS (NM_001201545)	7573	NM_022768	64783		NM_014092	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding
128838	chr2	63677301	63677500	+	0	NA	Intergenic	L1MEg|LINE|L1	88249	NM_001199111	4190		NM_005917	ENSG00000014641	MDH1	DEE88|EIEE88|HEL-S-32|KAR|MDH-s|MDHA|MGC:1375|MOR2	malate dehydrogenase 1	protein-coding
153614	chr22	28019721	28020430	+	0	NA	intron (NM_001145418, intron 13 of 22)	MIRc|SINE|MIR	-99463	NR_036169	100423034		NR_036169	ENSG00000264073	MIR3199-1	mir-3199-1	microRNA 3199-1	ncRNA
167188	chr3	128171051	128171150	+	0	NA	intron (NM_021937, intron 1 of 6)	intron (NM_021937, intron 1 of 6)	-17186	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
113694	chr19	10411001	10411650	+	0	NA	Intergenic	AluJr|SINE|Alu	-5448	NM_001243121	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
12922	chr1	110643751	110644330	+	0	NA	Intergenic	Intergenic	-12600	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
39643	chr11	61571621	61572280	+	0	NA	intron (NM_001370211, intron 1 of 7)	intron (NM_001370211, intron 1 of 7)	8922	NM_001252065	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
206656	chr7	36282201	36282400	+	0	NA	intron (NM_030636, intron 4 of 7)	intron (NM_030636, intron 4 of 7)	84940	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
145074	chr20	38634571	38634730	+	0	NA	exon (NM_001164431, exon 6 of 15)	exon (NM_001164431, exon 6 of 15)	32841	NM_001164431	343578		NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
106150	chr18	9708071	9708830	+	0	NA	intron (NM_006868, intron 1 of 6)	CpG	149	NM_006868	11031		NM_006868	ENSG00000168461	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding
6501	chr1	28508471	28508630	+	0	NA	promoter-TSS (NR_004404)	promoter-TSS (NR_004404)	-8	NR_004404	26768		NR_004404	ENSG00000200087	SNORA73B	105A|E1c|RNU105A|RNU17B|U17B	small nucleolar RNA, H/ACA box 73B	snoRNA
35812	chr11	2215301	2215500	+	0	NA	Intergenic	L2b|LINE|L2	42337	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
199954	chr6	127921801	127922550	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-3544	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
107740	chr18	50281001	50282480	+	0	NA	promoter-TSS (NM_002384)	promoter-TSS (NM_002384)	27	NM_001204143	4152		NM_002384	ENSG00000141644	MBD1	CXXC3|PCM1|RFT	methyl-CpG binding domain protein 1	protein-coding
72181	chr15	29262571	29263330	+	0	NA	intron (NM_015307, intron 2 of 10)	MER21A|LTR|ERVL	6872	NM_138704	56160		NM_138704	ENSG00000185115	NSMCE3	HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3	NSE3 homolog, SMC5-SMC6 complex component	protein-coding
52711	chr12	56590171	56590700	+	0	NA	3' UTR (NM_002898, exon 14 of 14)	3' UTR (NM_002898, exon 14 of 14)	39891	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
74598	chr15	60573751	60574530	+	0	NA	intron (NM_134260, intron 1 of 11)	MIRb|SINE|MIR	18386	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
225698	chr9	36573501	36574400	+	0	NA	intron (NM_001256693, intron 1 of 15)	intron (NM_001256693, intron 1 of 15)	1055	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
206906	chr7	37921271	37921530	+	0	NA	promoter-TSS (NM_001242948)	promoter-TSS (NM_001242948)	81	NM_001242948	54749		NM_017549	ENSG00000086289	EPDR1	EPDR|MERP-1|MERP1|UCC1	ependymin related 1	protein-coding
33524	chr10	119216321	119216780	+	0	NA	intron (NM_005308, intron 1 of 15)	AluJr|SINE|Alu	8979	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
37726	chr11	31369071	31370530	+	0	NA	promoter-TSS (NM_181706)	promoter-TSS (NM_181706)	-60	NM_181706	120526		NM_181706	ENSG00000170946	DNAJC24	DPH4|JJJ3|ZCSL3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding
5978	chr1	26935151	26935250	+	0	NA	intron (NM_006600, intron 2 of 8)	AluSx1|SINE|Alu	13457	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
153136	chr22	23754651	23754750	+	0	NA	promoter-TSS (NM_013378)	promoter-TSS (NM_013378)	-275	NM_013378	29802		NM_013378	ENSG00000128218	VPREB3	8HS20|N27C7-2	V-set pre-B cell surrogate light chain 3	protein-coding
222400	chr8	134266171	134266330	+	0	NA	Intergenic	Intergenic	-331821	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
7911	chr1	37478351	37479200	+	0	NA	intron (NM_001323550, intron 2 of 5)	MIR|SINE|MIR	-1455	NR_106790	102465438		NR_106790	ENSG00000283724	MIR6732	hsa-mir-6732	microRNA 6732	ncRNA
719	chr1	1433871	1434030	+	0	NA	intron (NR_125994, intron 1 of 1)	intron (NR_125994, intron 1 of 1)	623	NR_125996	102724312		NR_125994		LINC01770	-	long intergenic non-protein coding RNA 1770	ncRNA
10450	chr1	66279451	66279750	+	0	NA	intron (NM_001037340, intron 5 of 14)	AluSz|SINE|Alu	-52508	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
227388	chr9	89518771	89518930	+	0	NA	Intergenic	Intergenic	-20737	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
23619	chr1	230211451	230211750	+	0	NA	intron (NM_001291866, intron 3 of 15)	AluJr|SINE|Alu	144362	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
24869	chr10	804421	804880	+	0	NA	Intergenic	Intergenic	-114982	NM_014974	22982		NM_014974	ENSG00000151240	DIP2C	KIAA0934	disco interacting protein 2 homolog C	protein-coding
88222	chr16	81861571	81861730	+	0	NA	intron (NM_002661, intron 5 of 32)	intron (NM_002661, intron 5 of 32)	82359	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
56183	chr12	111432471	111432850	+	0	NA	intron (NM_005475, intron 2 of 7)	L1MB7|LINE|L1	-2202	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
76713	chr15	75921771	75922000	+	0	NA	intron (NM_147188, intron 5 of 6)	Tigger3b|DNA|TcMar-Tigger	18007	NR_037623	26263		NM_012170	ENSG00000167196	FBXO22	FBX22|FISTC1	F-box protein 22	protein-coding
199604	chr6	119312721	119313280	+	0	NA	intron (NM_005907, intron 2 of 12)	intron (NM_005907, intron 2 of 12)	36761	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
72888	chr15	40320571	40321550	+	0	NA	Intergenic	MER135|DNA|DNA	-2632	NM_001301268	100505573		NM_001301268	ENSG00000259330	INAFM2	LINC00984|OGU1	InaF motif containing 2	protein-coding
198395	chr6	105716501	105716700	+	0	NA	Intergenic	L1PA3|LINE|L1	-313518	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
176	chr1	638121	638490	+	0	NA	Intergenic	LTR33|LTR|ERVL	-5620	NR_162149	113219467		NR_162149		MIR12136	-	microRNA 12136	ncRNA
85655	chr16	56198921	56199700	+	0	NA	intron (NM_020988, intron 2 of 8)	intron (NM_020988, intron 2 of 8)	-4785	NR_026889	26077		NR_026889	ENSG00000261439	GNAO1-AS1	DKFZP434H168	GNAO1 antisense RNA 1	ncRNA
136848	chr2	185865051	185865150	+	0	NA	Intergenic	L1PA2|LINE|L1	-64949	NR_144454	107985781		NR_144453	ENSG00000231646	FSIP2-AS1	-	FSIP2 antisense RNA 1	ncRNA
183513	chr5	79561301	79561980	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-47506	NM_004272	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
142969	chr20	19937391	19938080	+	0	NA	intron (NM_001242581, intron 3 of 11)	intron (NM_001242581, intron 3 of 11)	51214	NM_001242581	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
13694	chr1	116752951	116753550	+	0	NA	Intergenic	AluSx|SINE|Alu	-1180	NM_001328609	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
58309	chr12	130879151	130879450	+	0	NA	Intergenic	Intergenic	7234	NM_006325	5901		NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
234546	chrX	19702151	19702450	+	0	NA	intron (NM_001353892, intron 4 of 17)	intron (NM_001353892, intron 4 of 17)	-31301	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
19415	chr1	174178771	174179080	+	0	NA	intron (NM_001366447, intron 1 of 20)	L1PA8|LINE|L1	19405	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
128467	chr2	55856451	55856550	+	0	NA	Intergenic	AluYa5|SINE|Alu	67282	NM_001039349	2202		NM_004105	ENSG00000115380	EFEMP1	ARCL1D|DHRD|DRAD|FBLN3|FBNL|FIBL-3|GLC1H|MLVT|MTLV|S1-5	EGF containing fibulin extracellular matrix protein 1	protein-coding
186020	chr5	133996101	133996300	+	0	NA	intron (NM_003374, intron 1 of 8)	intron (NM_003374, intron 1 of 8)	8568	NR_036624								
47744	chr12	6527971	6528130	+	0	NA	exon (NM_014865, exon 24 of 32)	exon (NM_014865, exon 24 of 32)	-6467	NR_152150	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
129006	chr2	64838171	64838330	+	0	NA	Intergenic	Intergenic	25381	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
56728	chr12	120120671	120121250	+	0	NA	Intergenic	Intergenic	-4207	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
43546	chr11	82920001	82920800	+	0	NA	intron (NM_145018, intron 3 of 5)	L1PB1|LINE|L1	-18660	NM_001319214	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
73847	chr15	49980621	49980880	+	0	NA	intron (NM_024837, intron 11 of 27)	MER45A|DNA|hAT-Tip100	132629	NR_073598	79895		NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
54445	chr12	91826221	91826480	+	0	NA	Intergenic	Intergenic	315363	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
1450	chr1	2654851	2655550	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-22184	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
159329	chr3	13046001	13046680	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	27089	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
199703	chr6	125154601	125154980	+	0	NA	intron (NM_001003395, intron 1 of 6)	intron (NM_001003395, intron 1 of 6)	544	NM_001292026	7164		NM_003287	ENSG00000111907	TPD52L1	D53|TPD53	TPD52 like 1	protein-coding
187356	chr5	141695671	141696030	+	0	NA	Intergenic	Intergenic	-13620	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
60603	chr13	42047401	42048200	+	0	NA	promoter-TSS (NM_178009)	promoter-TSS (NM_178009)	-848	NM_152910	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
205055	chr7	6592501	6592850	+	0	NA	intron (NM_001303039, intron 2 of 6)	AluJb|SINE|Alu	2654	NM_001303039	79034		NM_024067	ENSG00000146576	INTS15	C7orf26	integrator complex subunit 15	protein-coding
196500	chr6	43662051	43662350	+	0	NA	intron (NM_152732, intron 4 of 4)	Tigger1|DNA|TcMar-Tigger	17164	NM_152732	221421		NM_152732	ENSG00000172426	RSPH9	C6orf206|CILD12|MRPS18AL1	radial spoke head component 9	protein-coding
204453	chr7	4610821	4611830	+	0	NA	Intergenic	AluJo|SINE|Alu	-70970	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
21428	chr1	205335471	205336230	+	0	NA	TTS (NM_018203)	TTS (NM_018203)	-14105	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
86249	chr16	58265871	58266030	+	0	NA	intron (NM_001142302, intron 5 of 7)	intron (NM_001142302, intron 5 of 7)	16014	NM_001142302	29070		NM_014157	ENSG00000103021	CFAP263	CCDC113|HSPC065	cilia and flagella associated protein 263	protein-coding
124299	chr19	57888351	57889400	+	0	NA	5' UTR (NM_001144989, exon 1 of 3)	5' UTR (NM_001144989, exon 1 of 3)	162	NM_001144989	730051		NM_001144989	ENSG00000204514	ZNF814	-	zinc finger protein 814	protein-coding
163341	chr3	50425971	50426130	+	0	NA	intron (NM_006030, intron 3 of 37)	intron (NM_006030, intron 3 of 37)	60687	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
232326	chr9	135195451	135196230	+	0	NA	Intergenic	Intergenic	14231	NR_046107	401557		NR_046107		LOC401557	-	uncharacterized LOC401557	ncRNA
16158	chr1	153727531	153729350	+	0	NA	5' UTR (NM_023015, exon 1 of 30).2	5' UTR (NM_023015, exon 1 of 30).2	390	NM_023015	65123		NM_023015	ENSG00000143624	INTS3	C1orf193|C1orf60|INT3|SOSS-A|SOSSA	integrator complex subunit 3	protein-coding
197049	chr6	53426821	53427080	+	0	NA	Intergenic	L1PA2|LINE|L1	-77771	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
144666	chr20	36202551	36203230	+	0	NA	intron (NM_001258330, intron 14 of 20)	intron (NM_001258330, intron 14 of 20)	-33527	NM_015511	25980		NM_015511	ENSG00000131043	AAR2	C20orf4|CGI-23	AAR2 splicing factor	protein-coding
71781	chr15	21551801	21552150	+	0	NA	promoter-TSS (NR_152818)	promoter-TSS (NR_152818)	-798	NR_015416	727924		NR_015416	ENSG00000284988	LINC02203	-	long intergenic non-protein coding RNA 2203	ncRNA
22483	chr1	221721621	221722630	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	14775	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
147619	chr20	62139101	62139300	+	0	NA	intron (NM_002792, intron 3 of 6)	intron (NM_002792, intron 3 of 6)	4194	NM_002792	5688		NM_002792	ENSG00000101182	PSMA7	C6|HEL-S-276|HSPC|RC6-1|XAPC7	proteasome 20S subunit alpha 7	protein-coding
75789	chr15	68815821	68816380	+	0	NA	intron (NM_006305, intron 1 of 6)	intron (NM_006305, intron 1 of 6)	4795	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
55119	chr12	98571321	98571580	+	0	NA	Intergenic	AluSx|SINE|Alu	-22175	NM_005888	5250		NM_002635	ENSG00000075415	SLC25A3	OK/SW-cl.48|PHC|PTP|PiC	solute carrier family 25 member 3	protein-coding
51111	chr12	50070371	50071080	+	0	NA	intron (NM_001095, intron 3 of 11)	(CCCCAG)n|Simple_repeat|Simple_repeat	-2860	NM_001256830	41		NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding
224938	chr9	33028621	33030300	+	0	NA	intron (NM_001539, intron 3 of 8)	intron (NM_001539, intron 3 of 8)	4187	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
210090	chr7	97026251	97026750	+	0	NA	Intergenic	Intergenic	-1669	NM_005221	1749		NM_005221	ENSG00000105880	DLX5	SHFM1|SHFM1D	distal-less homeobox 5	protein-coding
43308	chr11	76213321	76214430	+	0	NA	Intergenic	Intergenic	-7373	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
126911	chr2	32572701	32573100	+	0	NA	intron (NR_125793, intron 1 of 1)	L2|LINE|L2	1918	NR_125793	103752586		NR_125793	ENSG00000290864	BIRC6-AS2	linc-birc6|megamind	BIRC6 antisense RNA 2	ncRNA
218318	chr8	42721051	42721150	+	0	NA	intron (NM_000749, intron 3 of 5)	intron (NM_000749, intron 3 of 5)	23724	NM_001347717	1142		NM_000749	ENSG00000147432	CHRNB3	-	cholinergic receptor nicotinic beta 3 subunit	protein-coding
100591	chr17	63436551	63436850	+	0	NA	intron (NM_001017916, intron 2 of 5)	intron (NM_001017916, intron 2 of 5)	3567	NM_001330421	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
150978	chr21	44332371	44332800	+	0	NA	intron (NM_001271440, intron 4 of 6)	CpG	5753	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
163896	chr3	52519601	52520000	+	0	NA	intron (NM_015136, intron 50 of 68)	intron (NM_015136, intron 50 of 68)	14057	NM_001134231	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
26270	chr10	14782651	14782980	+	0	NA	Intergenic	Intergenic	-7918	NM_031453	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
15087	chr1	148517671	148517830	+	0	NA	Intergenic	Intergenic	-34448	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
19176	chr1	171842421	171842680	+	0	NA	intron (NM_001350204, intron 1 of 20)	intron (NM_001350204, intron 1 of 20)	1052	NM_001350204	26052		NM_015569	ENSG00000197959	DNM3	Dyna III	dynamin 3	protein-coding
8388	chr1	40385521	40386750	+	0	NA	intron (NM_001198978, intron 1 of 9)	intron (NM_001198978, intron 1 of 9)	-7210	NM_001198979	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
51818	chr12	53441101	53443380	+	0	NA	intron (NM_001005354, intron 1 of 3)	AluSg4|SINE|Alu	506	NM_018457	54458		NM_018457	ENSG00000205352	PRR13	TXR1	proline rich 13	protein-coding
80919	chr16	3792651	3793380	+	0	NA	intron (NM_004380, intron 4 of 30)	intron (NM_004380, intron 4 of 30)	-75491	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
197192	chr6	63583921	63584780	+	0	NA	TTS (NM_001385254)	TTS (NM_001385254)	11870	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
64747	chr14	34551971	34552130	+	0	NA	Intergenic	Intergenic	4339	NR_004421	6060		NR_004421	ENSG00000207389	RNU1-4	HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F	RNA, U1 small nuclear 4	snRNA
235530	chrX	47227571	47227930	+	0	NA	intron (NM_033018, intron 14 of 15)	L1ME3A|LINE|L1	4732	NM_001170460	5127		NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
38741	chr11	46929651	46929750	+	0	NA	Intergenic	AluJb|SINE|Alu	-6989	NM_001003676	79096		NM_024113	ENSG00000149179	CSTPP1	C11orf49	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	protein-coding
4642	chr1	22129371	22129530	+	0	NA	intron (NM_030761, intron 2 of 4)	intron (NM_030761, intron 2 of 4)	13647	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
16851	chr1	155708451	155708550	+	0	NA	intron (NM_033657, intron 1 of 12)	L1ME3E|LINE|L1	19406	NM_033657	7818		NM_004632	ENSG00000132676	DAP3	DAP-3|MRP-S29|MRPS29|S29mt|bMRP-10|mS29	death associated protein 3	protein-coding
82604	chr16	18899551	18900080	+	0	NA	intron (NM_015092, intron 1 of 62)	intron (NM_015092, intron 1 of 62)	26593	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
116614	chr19	18284811	18285500	+	0	NA	Intergenic	MIRb|SINE|MIR	3078	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
149417	chr21	31192571	31192930	+	0	NA	intron (NM_001353694, intron 13 of 27)	MLT1I|LTR|ERVL-MaLR	-31810	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
156694	chr22	41674921	41675500	+	0	NA	intron (NM_001003796, intron 2 of 2)	intron (NM_001003796, intron 2 of 2)	13657	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
119767	chr19	41296201	41296850	+	0	NA	intron (NM_144732, intron 10 of 14)	intron (NM_144732, intron 10 of 14)	-13647	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
37522	chr11	18619501	18620100	+	0	NA	intron (NM_194285, intron 1 of 5)	intron (NM_194285, intron 1 of 5)	14542	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
211388	chr7	105019801	105020480	+	0	NA	intron (NM_182931, intron 1 of 26)	AluSx1|SINE|Alu	5935	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
43742	chr11	86066971	86067700	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	1749	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
71992	chr15	25838451	25838550	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	10325	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
66663	chr14	63896851	63896950	+	0	NA	intron (NM_015180, intron 1 of 114)	L1ME3C|LINE|L1	43896	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
122240	chr19	49014571	49015100	+	0	NA	intron (NR_135578, intron 12 of 14)	intron (NR_135578, intron 12 of 14)	2256	NM_000894	3972		NM_000894	ENSG00000104826	LHB	CGB4|HH23|LSH-B|LSH-beta	luteinizing hormone subunit beta	protein-coding
234742	chrX	22008201	22008400	+	0	NA	Intergenic	Intergenic	-24025	NM_001282754	5251		NM_000444	ENSG00000102174	PHEX	HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH	phosphate regulating endopeptidase X-linked	protein-coding
192147	chr6	16872571	16872730	+	0	NA	Intergenic	Intergenic	-111160	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
71823	chr15	22161401	22162100	+	0	NA	promoter-TSS (NR_135694).2	promoter-TSS (NR_135694).2	-820	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
94838	chr17	31485051	31485980	+	0	NA	intron (NM_032932, intron 3 of 14)	intron (NM_032932, intron 3 of 14)	-2593	NM_001303542	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
149591	chr21	33269951	33270250	+	0	NA	intron (NM_000628, intron 2 of 6)	L1MC4|LINE|L1	3733	NM_000628	3588		NM_000628	ENSG00000243646	IL10RB	CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IBD25|IL-10R2|IL-10RB	interleukin 10 receptor subunit beta	protein-coding
49488	chr12	25246451	25247250	+	0	NA	intron (NM_001369786, intron 1 of 5)	AluY|SINE|Alu	4079	NM_033360	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
176828	chr4	102560521	102561430	+	0	NA	intron (NM_001382625, intron 6 of 24)	MIRb|SINE|MIR	-58489	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
17692	chr1	158117821	158118380	+	0	NA	Intergenic	Intergenic	22540	NR_033946	646268		NR_033946	ENSG00000231666	LINC01704	-	long intergenic non-protein coding RNA 1704	ncRNA
84019	chr16	29468101	29468650	+	0	NA	promoter-TSS (NR_002556)	promoter-TSS (NR_002556)	-797	NR_002556	388242		NR_002556	ENSG00000290678	LOC388242	-	SAGA complex associated factor 29 pseudogene	pseudo
181036	chr5	35900821	35901450	+	0	NA	Intergenic	Intergenic	37487	NM_001042625	133690		NM_144647	ENSG00000152611	CAPSL	-	calcyphosine like	protein-coding
159590	chr3	15073501	15073700	+	0	NA	3' UTR (NM_022340, exon 14 of 14)	3' UTR (NM_022340, exon 14 of 14)	-8285	NM_022497	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
47056	chr12	548171	548530	+	0	NA	intron (NM_173593, intron 9 of 19)	intron (NM_173593, intron 9 of 19)	38136	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
119510	chr19	40523301	40523850	+	0	NA	exon (NM_020971, exon 17 of 36)	exon (NM_020971, exon 17 of 36)	-6916	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
151266	chr21	45403151	45403250	+	0	NA	Intergenic	Intergenic	-1965	NM_001379500	80781		NM_030582	ENSG00000182871	COL18A1	GLCC|KNO|KNO1|KS	collagen type XVIII alpha 1 chain	protein-coding
30280	chr10	75207971	75208530	+	0	NA	Intergenic	Intergenic	-1904	NM_001324087	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
209011	chr7	74290101	74291230	+	0	NA	intron (NM_032421, intron 1 of 15)	intron (NM_032421, intron 1 of 15)	1258	NM_003388	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
146463	chr20	49706601	49707400	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	6878	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
156793	chr22	41912501	41912750	+	0	NA	intron (NM_001207020, intron 1 of 3)	intron (NM_001207020, intron 1 of 3)	2449	NM_001353438	440829		NM_001207020	ENSG00000234965	SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
38978	chr11	47576771	47576930	+	0	NA	intron (NM_016506, intron 2 of 3)	AluSx|SINE|Alu	1921	NM_001318725	55709		NM_016506	ENSG00000123444	KBTBD4	BKLHD4|HSPC252	kelch repeat and BTB domain containing 4	protein-coding
163437	chr3	50586971	50587130	+	0	NA	3' UTR (NM_001377425, exon 11 of 11)	3' UTR (NM_001377425, exon 11 of 11)	-16023	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
116713	chr19	18446651	18446950	+	0	NA	exon (NM_006532, exon 9 of 12)	exon (NM_006532, exon 9 of 12)	-8667	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
98208	chr17	46135371	46135530	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	57332	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
147787	chr20	62617971	62619180	+	0	NA	Intergenic	Intergenic	-23928	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
230419	chr9	128126921	128129180	+	0	NA	promoter-TSS (NR_024425)	promoter-TSS (NR_024425)	138	NM_001256335	80142		NM_025072	ENSG00000148334	PTGES2	C9orf15|GBF-1|GBF1|PGES2|mPGES-2	prostaglandin E synthase 2	protein-coding
100417	chr17	60577251	60578050	+	0	NA	intron (NR_126009, intron 3 of 3)	L1M4|LINE|L1	13104	NR_126009	388406		NR_126009	ENSG00000267772	LINC01999	-	long intergenic non-protein coding RNA 1999	ncRNA
81406	chr16	8567401	8568280	+	0	NA	intron (NR_110736, intron 2 of 3)	intron (NR_110736, intron 2 of 3)	21998	NR_110736	283953		NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
203721	chr7	1083771	1083930	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	-2957	NM_001039966	2852		NM_001505	ENSG00000164850	GPER1	CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER	G protein-coupled estrogen receptor 1	protein-coding
94131	chr17	28251171	28251870	+	0	NA	Intergenic	CpG	4076	NR_002181	23614		NM_021092	ENSG00000290672	PPY2P	PPY2	pancreatic polypeptide 2, pseudogene	pseudo
186593	chr5	138507651	138507750	+	0	NA	non-coding (NR_157090, exon 10 of 10)	non-coding (NR_157090, exon 10 of 10)	34011	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
35958	chr11	2772771	2772950	+	0	NA	intron (NM_181798, intron 12 of 15)	intron (NM_181798, intron 12 of 15)	-72862	NR_002728	10984		NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1	ncRNA
115203	chr19	14474851	14474950	+	0	NA	intron (NM_000955, intron 1 of 2)	intron (NM_000955, intron 1 of 2)	454	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
157352	chr22	44681451	44682300	+	0	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	4790	NM_001198721	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
81355	chr16	4810371	4811350	+	0	NA	intron (NR_136700, intron 14 of 14)	AluSx1|SINE|Alu	-7910	NR_046480	79641		NM_024589	ENSG00000067836	ROGDI	KTZS|RAV2|ROGD1	rogdi atypical leucine zipper	protein-coding
189790	chr5	176745521	176746050	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	2580	NR_108030	102577424		NR_108030	ENSG00000248859	LINC01574	HI-LNC12	long intergenic non-protein coding RNA 1574	ncRNA
2240	chr1	8873221	8874230	+	0	NA	intron (NM_001428, intron 2 of 11)	G-rich|Low_complexity|Low_complexity	4961	NM_001353346	2023		NM_001428	ENSG00000074800	ENO1	ENO1-IT1|ENO1L1|HEL-S-17|MPB1|NNE|PPH	enolase 1	protein-coding
171412	chr3	196211271	196212230	+	0	NA	promoter-TSS (NM_001039617)	promoter-TSS (NM_001039617)	-350	NR_135618	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
58601	chr12	132477971	132478130	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-12101	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
118288	chr19	35298551	35299080	+	0	NA	intron (NM_001199216, intron 4 of 10)	(AC)n|Simple_repeat|Simple_repeat	6654	NM_002361	4099		NM_002361	ENSG00000105695	MAG	GMA|S-MAG|SIGLEC-4A|SIGLEC4|SIGLEC4A|SPG75	myelin associated glycoprotein	protein-coding
161849	chr3	45700571	45700730	+	0	NA	intron (NM_001319073, intron 2 of 20)	AluSz|SINE|Alu	11254	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
105815	chr18	2960011	2960930	+	0	NA	intron (NM_001375809, intron 2 of 19)	intron (NM_001375809, intron 2 of 19)	-13847	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
5016	chr1	24485001	24485200	+	0	NA	Intergenic	AluJr4|SINE|Alu	-17244	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
122573	chr19	49679301	49679680	+	0	NA	intron (NM_001207042, intron 1 of 7)	intron (NM_001207042, intron 1 of 7)	2219	NM_001207042	3276		NM_001536	ENSG00000126457	PRMT1	ANM1|HCP1|HRMT1L2|IR1B4	protein arginine methyltransferase 1	protein-coding
83803	chr16	28825921	28826380	+	0	NA	intron (NM_148416, intron 4 of 22)	intron (NM_148416, intron 4 of 22)	3102	NM_007245	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
232688	chr9	136527801	136529150	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	-8849	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
86587	chr16	67243701	67245590	+	0	NA	intron (NM_001318202, intron 1 of 23)	intron (NM_001318202, intron 1 of 23)	2836	NM_001318202	29109		NM_013241	ENSG00000135723	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
178482	chr4	148446821	148447080	+	0	NA	Intergenic	Intergenic	-2252	NM_001354819	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
151298	chr21	45535621	45535950	+	0	NA	intron (NM_194255, intron 2 of 5)	intron (NM_194255, intron 2 of 5)	-1029	NM_001205207	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
111218	chr19	3494801	3495000	+	0	NA	intron (NM_031304, intron 2 of 4)	intron (NM_031304, intron 2 of 4)	5774	NM_031304	83475		NM_031304	ENSG00000129932	DOHH	HLRC1|NEDMVIC|hDOHH	deoxyhypusine hydroxylase	protein-coding
109300	chr19	564051	565100	+	0	NA	Intergenic	Intergenic	-6708	NM_198591	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
59135	chr13	21435701	21436480	+	0	NA	intron (NM_153251, intron 1 of 11)	LTR16A|LTR|ERVL	23213	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
24177	chr1	235881251	235881750	+	0	NA	intron (NM_001301365, intron 1 of 52)	L1MB3|LINE|L1	2208	NM_001301365	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
73426	chr15	43107401	43107600	+	0	NA	Intergenic	AluSq|SINE|Alu	-1462	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
232415	chr9	136080051	136080150	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	15189	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
175255	chr4	65293621	65293750	+	0	NA	Intergenic	L1PA2|LINE|L1	-289185	NR_033976	401134		NR_033976	ENSG00000250125	LINC02232	-	long intergenic non-protein coding RNA 2232	ncRNA
219534	chr8	76454771	76455030	+	0	NA	intron (NR_105006, intron 2 of 5)	intron (NR_105006, intron 2 of 5)	48246	NR_105006	101926978		NR_105006	ENSG00000254300	LINC01111	-	long intergenic non-protein coding RNA 1111	ncRNA
33216	chr10	114044551	114044750	+	0	NA	exon (NM_000684, exon 1 of 1)	exon (NM_000684, exon 1 of 1)	784	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
66009	chr14	58255551	58255930	+	0	NA	intron (NR_038123, intron 2 of 9)	AluSp|SINE|Alu	10897	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
61732	chr13	74129501	74130380	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	3989	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
124277	chr19	57813151	57813700	+	0	NA	intron (NM_024762, intron 1 of 2)	intron (NM_024762, intron 1 of 2)	1488	NM_024762	79818		NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
8596	chr1	41496101	41496500	+	0	NA	Intergenic	CpG	-11617	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
189461	chr5	173036971	173037430	+	0	NA	Intergenic	Intergenic	16474	NR_002988	677841		NR_002988	ENSG00000212402	SNORA74B	U19-2	small nucleolar RNA, H/ACA box 74B	snoRNA
194170	chr6	32109151	32109980	+	0	NA	promoter-TSS (NM_001365276).6	promoter-TSS (NM_001365276).6	-227	NM_001365276	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
197227	chr6	68087871	68088030	+	0	NA	Intergenic	Intergenic	32599	NR_125869	102723883		NR_125869	ENSG00000223504	LOC102723883	-	uncharacterized LOC102723883	ncRNA
180264	chr5	1772771	1772930	+	0	NA	Intergenic	Intergenic	26987	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
127120	chr2	37653171	37653330	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	18392	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
150034	chr21	37363101	37363500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2273	NM_001396	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
144698	chr20	36464771	36465900	+	0	NA	intron (NM_183006, intron 1 of 6)	MIRc|SINE|MIR	3540	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
46760	chr11	129803871	129804300	+	0	NA	Intergenic	L1PB1|LINE|L1	-11696	NM_001331212	120224		NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
227626	chr9	92805921	92806600	+	0	NA	non-coding (NR_136301, exon 1 of 1)	non-coding (NR_136301, exon 1 of 1)	1827	NR_136301	101929748		NR_136301	ENSG00000288062	LOC101929748	-	uncharacterized LOC101929748	ncRNA
183132	chr5	74889621	74890280	+	0	NA	Intergenic	Intergenic	-22984	NM_015566	26049		NM_015566	ENSG00000198780	FAM169A	SLAP|SLAP75	family with sequence similarity 169 member A	protein-coding
208508	chr7	69651021	69651480	+	0	NA	intron (NM_001127232, intron 1 of 4)	intron (NM_001127232, intron 1 of 4)	52775	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
150301	chr21	41997271	41997430	+	0	NA	intron (NM_020727, intron 1 of 1)	AluSz|SINE|Alu	-11844	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
16396	chr1	154419271	154419720	+	0	NA	intron (NM_001206866, intron 1 of 6)	intron (NM_001206866, intron 1 of 6)	-12931	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
163868	chr3	52497771	52498130	+	0	NA	intron (NM_015136, intron 1 of 68)	intron (NM_015136, intron 1 of 68)	2612	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
197343	chr6	73441201	73441600	+	0	NA	intron (NM_138441, intron 2 of 4)	intron (NM_138441, intron 2 of 4)	10897	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
205583	chr7	21412371	21413330	+	0	NA	Intergenic	Intergenic	-15233	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
224074	chr9	4236071	4236630	+	0	NA	intron (NM_001042413, intron 2 of 10)	intron (NM_001042413, intron 2 of 10)	63718	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
65298	chr14	50063821	50064180	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	41043	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
102718	chr17	76187751	76187850	+	0	NA	intron (NM_052916, intron 2 of 18)	AluSz|SINE|Alu	-46555	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
116136	chr19	17340551	17340950	+	0	NA	intron (NM_001128855, intron 7 of 8)	(CTCTG)n|Simple_repeat|Simple_repeat	3197	NM_001128855	84705		NM_032620	ENSG00000130299	GTPBP3	COXPD23|GTPBG3|MSS1|MTGP1|THDF1	GTP binding protein 3, mitochondrial	protein-coding
54558	chr12	92184771	92185600	+	0	NA	non-coding (NR_135036, exon 3 of 3)	non-coding (NR_135036, exon 3 of 3)	39100	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
136361	chr2	176091951	176092250	+	0	NA	promoter-TSS (NM_000523)	promoter-TSS (NM_000523)	-621	NM_000523	3239		NM_000523	ENSG00000128714	HOXD13	BDE|BDSD|HOX4I|SPD|SPD1	homeobox D13	protein-coding
140300	chr2	232440501	232441050	+	0	NA	Intergenic	Intergenic	-15378	NM_001631	248		NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
46795	chr11	130146801	130147200	+	0	NA	Intergenic	Intergenic	-12782	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
216630	chr8	22103321	22104180	+	0	NA	3' UTR (NM_001354250, exon 17 of 17)	3' UTR (NM_001354250, exon 17 of 17)	5669	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
23311	chr1	228084571	228085050	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	1660	NM_001024227	375		NM_001658	ENSG00000143761	ARF1	PVNH8	ADP ribosylation factor 1	protein-coding
135514	chr2	162021851	162022150	+	0	NA	intron (NR_166824, intron 12 of 25)	intron (NR_166824, intron 12 of 25)	52215	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
10617	chr1	67832721	67833700	+	0	NA	intron (NR_040077, intron 1 of 9)	CpG	257	NM_018841	55970		NM_018841	ENSG00000172380	GNG12	HG3A	G protein subunit gamma 12	protein-coding
62676	chr13	102608921	102609530	+	0	NA	intron (NR_160411, intron 2 of 28)	MSTA|LTR|ERVL-MaLR	12239	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
150807	chr21	43937871	43938230	+	0	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	12652	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
44696	chr11	111514571	111515080	+	0	NA	promoter-TSS (NM_001100388)	promoter-TSS (NM_001100388)	40	NM_207430	399949		NM_207430	ENSG00000183644	HOATZ	C11orf88	HOATZ cilia and flagella associated protein	protein-coding
124026	chr19	55483471	55483850	+	0	NA	exon (NM_033113, exon 3 of 3)	exon (NM_033113, exon 3 of 3)	-1528	NM_020378	57106		NM_020378	ENSG00000090971	NAT14	KLP1	N-acetyltransferase 14 (putative)	protein-coding
59514	chr13	27125571	27126100	+	0	NA	intron (NR_046547, intron 1 of 2)	L1P2|LINE|L1	302	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
88503	chr16	85275601	85275950	+	0	NA	Intergenic	Intergenic	-7183	NR_038859	197196		NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
127674	chr2	43187021	43187500	+	0	NA	Intergenic	Intergenic	39346	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
229862	chr9	126411201	126412300	+	0	NA	intron (NM_033446, intron 6 of 9)	intron (NM_033446, intron 6 of 9)	-1246	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
95342	chr17	35773171	35773330	+	0	NA	exon (NM_024302, exon 4 of 8).2	exon (NM_024302, exon 4 of 8).2	12363	NM_145272	146853		NM_145272	ENSG00000270806	C17orf50	-	chromosome 17 open reading frame 50	protein-coding
78938	chr15	101267071	101267430	+	0	NA	Intergenic	Intergenic	10235	NM_018445	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
4770	chr1	23538521	23538850	+	0	NA	Intergenic	L1MB7|LINE|L1	-7452	NM_004091	1870		NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding
180786	chr5	32232251	32233100	+	0	NA	intron (NM_001294344, intron 13 of 13)	intron (NM_001294344, intron 13 of 13)	-58356	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
67680	chr14	73138851	73139700	+	0	NA	intron (NM_007318, intron 1 of 11)	AluY|SINE|Alu	2768	NM_007318	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
204188	chr7	2478701	2478900	+	0	NA	Intergenic	Intergenic	-2417	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
35241	chr11	842021	843650	+	0	NA	promoter-TSS (NM_001025239)	promoter-TSS (NM_001025239)	11	NM_001025239	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
85526	chr16	50840901	50841680	+	0	NA	Intergenic	CpG	34618	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
14544	chr1	144877471	144877630	+	0	NA	intron (NR_104189, intron 2 of 3).2	MLT1D|LTR|ERVL-MaLR	159379	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
31249	chr10	91933921	91934380	+	0	NA	intron (NR_165093, intron 2 of 40)	intron (NR_165093, intron 2 of 40)	10380	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
98186	chr17	46107951	46108250	+	0	NA	intron (NM_015443, intron 2 of 14).2	L2a|LINE|L2	84682	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
48427	chr12	9683621	9683980	+	0	NA	intron (NM_013269, intron 2 of 4)	L1PA7|LINE|L1	14087	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
94720	chr17	30717851	30718150	+	0	NA	intron (NR_144394, intron 1 of 8)	L2c|LINE|L2	8392	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
137923	chr2	200968551	200969180	+	0	NA	Intergenic	L2b|LINE|L2	-5205	NM_006190	4999		NM_006190	ENSG00000115942	ORC2	ORC2L	origin recognition complex subunit 2	protein-coding
97062	chr17	42373221	42373480	+	0	NA	intron (NM_001369516, intron 1 of 23)	AluSc8|SINE|Alu	15092	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
215833	chr8	6725851	6725950	+	0	NA	intron (NM_018361, intron 2 of 7)	intron (NM_018361, intron 2 of 7)	17258	NM_018361	55326		NM_018361	ENSG00000155189	AGPAT5	1AGPAT5|LPAATE|LPLAT5	1-acylglycerol-3-phosphate O-acyltransferase 5	protein-coding
72687	chr15	38556971	38557330	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	7664	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
50431	chr12	47554351	47554450	+	0	NA	Intergenic	Intergenic	139392	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
121645	chr19	47479921	47480530	+	0	NA	intron (NM_007059, intron 7 of 11)	intron (NM_007059, intron 7 of 11)	3994	NR_111923	11133		NM_007059	ENSG00000118162	KPTN	2E4|KICS4|MRT41	kaptin, actin binding protein	protein-coding
128448	chr2	55606471	55606830	+	0	NA	intron (NM_020463, intron 2 of 14)	AluSq2|SINE|Alu	10972	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
117971	chr19	33368271	33368430	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-5359	NM_001806	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
14052	chr1	120771071	120771550	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-34246	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
30466	chr10	79148371	79148780	+	0	NA	intron (NM_020338, intron 3 of 24)	intron (NM_020338, intron 3 of 24)	79609	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
194723	chr6	33791071	33791230	+	0	NA	Intergenic	Intergenic	-2020	NM_001348710	221496		NM_181336	ENSG00000161904	LEMD2	CTRCT42|LEM2|MARUPS|NET25|dJ482C21.1	LEM domain nuclear envelope protein 2	protein-coding
107518	chr18	48022651	48022900	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-91629	NM_001135937	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
78289	chr15	90885951	90886530	+	0	NA	intron (NM_001143784, intron 2 of 16)	intron (NM_001143784, intron 2 of 16)	1194	NM_001143784	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
154309	chr22	31953101	31953850	+	0	NA	intron (NM_003405, intron 1 of 1)	U13|snRNA|snRNA	-8113	NM_015372	25775		NM_015372	ENSG00000128254	YWHAH-AS1	C22orf24|HSN44A4A	YWHAH antisense RNA 1	ncRNA
136867	chr2	186695301	186695680	+	0	NA	intron (NM_177454, intron 1 of 7)	intron (NM_177454, intron 1 of 7)	1430	NM_177454	165215		NM_177454	ENSG00000144369	FAM171B	KIAA1946	family with sequence similarity 171 member B	protein-coding
206869	chr7	37633071	37633830	+	0	NA	Intergenic	L1MD1|LINE|L1	-50316	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
1276	chr1	2318821	2319350	+	0	NA	Intergenic	Intergenic	33576	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
209884	chr7	91590111	91590250	+	0	NA	Intergenic	L1PA3|LINE|L1	290522	NM_006980	7978		NM_006980	ENSG00000127989	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
95708	chr17	38511151	38511250	+	0	NA	3' UTR (NM_001199417, exon 24 of 24).2	3' UTR (NM_001199417, exon 24 of 24).2	82736	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
110672	chr19	2260351	2261000	+	0	NA	Intergenic	L1M3|LINE|L1	-4258	NM_144616	126306		NM_144616	ENSG00000167476	JSRP1	JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding
73648	chr15	44706151	44706450	+	0	NA	Intergenic	L1MA3|LINE|L1	-5217	NM_004048	567		NM_004048	ENSG00000166710	B2M	IMD43	beta-2-microglobulin	protein-coding
127773	chr2	44172821	44173180	+	0	NA	intron (NM_177969, intron 1 of 4)	intron (NM_177969, intron 1 of 4)	4125	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
61474	chr13	52404501	52404700	+	0	NA	intron (NM_018676, intron 1 of 4)	intron (NM_018676, intron 1 of 4)	1572	NM_199263	55901		NM_018676	ENSG00000136114	THSD1	ANIB12|LMPHM13|TMTSP|UNQ3010	thrombospondin type 1 domain containing 1	protein-coding
153278	chr22	24156801	24158250	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-23962	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
142806	chr20	14467121	14467250	+	0	NA	intron (NM_001351661, intron 3 of 17)	L1PA4|LINE|L1	-87199	NR_104193	140848		NR_104193	ENSG00000227927	MACROD2-IT1	C20orf68|NCRNA00227|bA467D7.4	MACROD2 intronic transcript 1	ncRNA
24379	chr1	241677121	241677850	+	0	NA	intron (NM_001367482, intron 4 of 27)	intron (NM_001367482, intron 4 of 27)	25204	NM_001367482	128025		NM_144625	ENSG00000162843	WDR64	-	WD repeat domain 64	protein-coding
25346	chr10	6273421	6273680	+	0	NA	Intergenic	Intergenic	-52994	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
220758	chr8	102391021	102391350	+	0	NA	intron (NM_001282873, intron 1 of 58)	Tigger18a|DNA|TcMar-Tigger	-21154	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
171741	chr3	198050951	198051050	+	0	NA	Intergenic	LTR13|LTR|ERVK	-11533	NR_046669	100873947		NR_046669	ENSG00000232832	LMLN-AS1	-	LMLN antisense RNA 1	ncRNA
181584	chr5	43310401	43310600	+	0	NA	intron (NM_001324224, intron 1 of 9)	intron (NM_001324224, intron 1 of 9)	2681	NM_001330663	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
27066	chr10	27153071	27153230	+	0	NA	intron (NM_001253866, intron 1 of 17)	L2b|LINE|L2	1234	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
139813	chr2	230344021	230345130	+	0	NA	intron (NM_138402, intron 2 of 18)	L1PA10|LINE|L1	17382	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
28182	chr10	44306851	44306950	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	14150	NR_164139	100130539		NM_001258000	ENSG00000277288	LINC02881	C10orf142	long intergenic non-protein coding RNA 2881	ncRNA
194624	chr6	33570501	33572330	+	0	NA	Intergenic	CpG	8861	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
202394	chr6	157846501	157846900	+	0	NA	intron (NM_016224, intron 1 of 17)	intron (NM_016224, intron 1 of 17)	23454	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
10952	chr1	84168421	84169330	+	0	NA	intron (NM_001375580, intron 1 of 8)	intron (NM_001375580, intron 1 of 8)	4181	NM_001375577	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
188514	chr5	155700401	155700800	+	0	NA	Intergenic	LTR41C|LTR|ERVL	-626564	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
197076	chr6	54961771	54962030	+	0	NA	Intergenic	L1PA3|LINE|L1	115129	NM_001010872	222584		NM_001010872	ENSG00000168143	FAM83B	C6orf143	family with sequence similarity 83 member B	protein-coding
144283	chr20	34679221	34680180	+	0	NA	Intergenic	L2a|LINE|L2	-2608	NM_080476	128869		NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1|GPIBD21|NEDBSS|PIG-U	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
141135	chr2	239159371	239159530	+	0	NA	intron (NM_006037, intron 6 of 26)	intron (NM_006037, intron 6 of 26)	36007	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
167453	chr3	129094671	129094830	+	0	NA	intron (NM_001204887, intron 2 of 3)	AluY|SINE|Alu	27054	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
136438	chr2	176653671	176654100	+	0	NA	intron (NR_110599, intron 2 of 3)	intron (NR_110599, intron 2 of 3)	16131	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
196557	chr6	44078721	44079980	+	0	NA	Intergenic	Intergenic	-4698	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
183964	chr5	88674021	88674280	+	0	NA	promoter-TSS (NR_024384)	promoter-TSS (NR_024384)	-811	NR_024384	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
219086	chr8	65837401	65838130	+	0	NA	intron (NM_001242318, intron 1 of 12)	Tigger4|DNA|TcMar-Tigger	4299	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
174574	chr4	40234971	40235430	+	0	NA	5' UTR (NM_001278359, exon 2 of 4)	5' UTR (NM_001278359, exon 2 of 4)	38169	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
144912	chr20	36955301	36956080	+	0	NA	Intergenic	AluSx|SINE|Alu	-3982	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
148052	chr20	63238501	63239280	+	0	NA	TTS (NR_036163)	TTS (NR_036163)	111	NR_036163	100423014		NR_036163	ENSG00000266463	MIR3196	mir-3196	microRNA 3196	ncRNA
8858	chr1	43391071	43391230	+	0	NA	intron (NM_001365999, intron 1 of 71)	AluSp|SINE|Alu	1251	NM_001365999	23334		NM_015284	ENSG00000198198	SZT2	C1orf84|DEE18|EIEE18|KIAA0467|KICS1|SZT2A|SZT2B	SZT2 subunit of KICSTOR complex	protein-coding
234411	chrX	16789401	16790200	+	0	NA	intron (NM_001168683, intron 1 of 7)	L1MC2|LINE|L1	3334	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
76504	chr15	74951571	74951730	+	0	NA	Intergenic	AluSq2|SINE|Alu	5122	NM_017793	54913		NM_017793	ENSG00000178718	RPP25	-	ribonuclease P and MRP subunit p25	protein-coding
158714	chr3	8352801	8353000	+	0	NA	intron (NR_033378, intron 3 of 3)	intron (NR_033378, intron 3 of 3)	148758	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
16026	chr1	152188701	152189310	+	0	NA	Intergenic	CpG	-29777	NM_001122965	126638		NM_152364	ENSG00000215853	RPTN	-	repetin	protein-coding
118794	chr19	38405671	38405830	+	0	NA	intron (NM_001351675, intron 5 of 5)	intron (NM_001351675, intron 5 of 5)	2615	NM_001351675	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
47783	chr12	6562301	6562500	+	0	NA	intron (NM_001258309, intron 10 of 16)	intron (NM_001258309, intron 10 of 16)	5891	NM_001258309	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
195248	chr6	36380071	36380430	+	0	NA	intron (NM_001207040, intron 1 of 6)	intron (NM_001207040, intron 1 of 6)	7419	NM_001207038	51513		NM_016135	ENSG00000010030	ETV7	TEL-2|TEL2|TELB	ETS variant transcription factor 7	protein-coding
12420	chr1	101371171	101371530	+	0	NA	intron (NR_126402, intron 4 of 4)	intron (NR_126402, intron 4 of 4)	47513	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
237322	chrX	118471201	118471400	+	0	NA	Intergenic	LTR12|LTR|ERV1	-24609	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
9512	chr1	51341921	51342200	+	0	NA	intron (NM_001144832, intron 1 of 17)	intron (NM_001144832, intron 1 of 17)	3056	NM_001144832	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
142587	chr20	5545501	5545700	+	0	NA	3' UTR (NM_019593, exon 20 of 20)	3' UTR (NM_019593, exon 20 of 20)	-35598	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
151784	chr22	18147071	18147850	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2710	NM_017414	11274		NM_017414	ENSG00000184979	USP18	ISG43|PTORCH2|UBP43	ubiquitin specific peptidase 18	protein-coding
182352	chr5	59380421	59380700	+	0	NA	intron (NM_001364600, intron 3 of 7)	intron (NM_001364600, intron 3 of 7)	-23590	NM_001197219	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
77155	chr15	79967201	79967400	+	0	NA	intron (NM_004049, intron 1 of 1)	AluSx1|SINE|Alu	3896	NM_001114735	597		NM_004049	ENSG00000140379	BCL2A1	ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1	BCL2 related protein A1	protein-coding
118693	chr19	38134571	38134930	+	0	NA	intron (NM_015073, intron 10 of 21)	intron (NM_015073, intron 10 of 21)	-28346	NR_145800	109623473		NR_145800		SNORD152	-	small nucleolar RNA, C/D box 152	snoRNA
158613	chr3	4849271	4849430	+	0	NA	Intergenic	Intergenic	57151	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
26750	chr10	22702051	22703500	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	11333	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
39684	chr11	61719301	61719700	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	-33136	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
9446	chr1	50023721	50023980	+	0	NA	non-coding (NR_136623, exon 1 of 13)	non-coding (NR_136623, exon 1 of 13)	104	NM_001323575	84871		NM_032785	ENSG00000186094	AGBL4	CCP6	AGBL carboxypeptidase 4	protein-coding
83071	chr16	22359171	22359330	+	0	NA	intron (NM_001802, intron 2 of 4)	AluSg7|SINE|Alu	15369	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
222457	chr8	139505171	139505530	+	0	NA	Intergenic	Intergenic	197773	NR_104210	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
99057	chr17	48915221	48916430	+	0	NA	intron (NM_023079, intron 3 of 6)	intron (NM_023079, intron 3 of 6)	-6842	NR_135674	105371814		NR_135674	ENSG00000293025	LOC105371814	-	uncharacterized LOC105371814	ncRNA
232293	chr9	134454051	134454700	+	0	NA	Intergenic	Intergenic	47815	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
178995	chr4	163498171	163498530	+	0	NA	intron (NM_018352, intron 1 of 6)	AluY|SINE|Alu	3660	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
189338	chr5	172175201	172176800	+	0	NA	intron (NM_005990, intron 1 of 18)	L2c|LINE|L2	12224	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
60575	chr13	41764751	41764850	+	0	NA	intron (NM_015058, intron 20 of 44)	L2b|LINE|L2	196285	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
206735	chr7	36641571	36641730	+	0	NA	intron (NM_001177506, intron 4 of 21)	intron (NM_001177506, intron 4 of 21)	-41530	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
47821	chr12	6590621	6591200	+	0	NA	intron (NM_001273, intron 22 of 39)	AluSc8|SINE|Alu	-9301	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
1745	chr1	5999771	6000380	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	7399	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
154003	chr22	30410251	30410600	+	0	NA	intron (NM_033382, intron 7 of 10)	MIRc|SINE|MIR	13407	NM_001291932	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
236109	chrX	57163221	57163500	+	0	NA	Intergenic	L1PA4|LINE|L1	-25735	NM_019003	54466		NM_019003	ENSG00000147059	SPIN2A	DXF34|SPIN2|TDRD25|dJ323P24.1	spindlin family member 2A	protein-coding
106107	chr18	9161751	9162050	+	0	NA	intron (NM_001204056, intron 1 of 11)	AluJo|SINE|Alu	24337	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
155405	chr22	38353101	38353800	+	0	NA	intron (NR_002821, intron 4 of 4)	intron (NR_002821, intron 4 of 4)	-35366	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
68798	chr14	91234521	91234780	+	0	NA	exon (NM_001348437, exon 3 of 3)	exon (NM_001348437, exon 3 of 3)	10054	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
225859	chr9	38263571	38263730	+	0	NA	Intergenic	L1MA4|LINE|L1	-129052	NM_000692	219		NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
161876	chr3	45915371	45916530	+	0	NA	promoter-TSS (NM_001276378)	promoter-TSS (NM_001276378)	-226	NM_001276379	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
51450	chr12	52045621	52046430	+	0	NA	intron (NM_001202233, intron 2 of 7)	intron (NM_001202233, intron 2 of 7)	-5377	NM_002135	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
151683	chr22	17136401	17136630	+	0	NA	Intergenic	AluSx1|SINE|Alu	14920	NR_103793	100996342		NR_103793	ENSG00000235478	LINC01664	-	long intergenic non-protein coding RNA 1664	ncRNA
56144	chr12	111323221	111323490	+	0	NA	intron (NM_015267, intron 18 of 21)	intron (NM_015267, intron 18 of 21)	19213	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
150586	chr21	43269171	43269650	+	0	NA	Intergenic	Intergenic	62629	NR_103713	100126693		NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA
47128	chr12	722571	722730	+	0	NA	Intergenic	Intergenic	-29929	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
112480	chr19	6416101	6416500	+	0	NA	TTS (NR_037505)	TTS (NR_037505)	211	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
55317	chr12	103908851	103908950	+	0	NA	intron (NR_027249, intron 3 of 15)	L2a|LINE|L2	21311	NR_027249	253724		NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
117308	chr19	19500201	19500700	+	0	NA	intron (NM_001384537, intron 9 of 12)	intron (NM_001384537, intron 9 of 12)	15098	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
234597	chrX	19793521	19793780	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	6123	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
40885	chr11	65120671	65120830	+	0	NA	exon (NM_001997, exon 5 of 5)	exon (NM_001997, exon 5 of 5)	1384	NM_001997	2197		NM_001997	ENSG00000149806	FAU	FAU1|Fub1|Fubi|MNSFbeta|RPS30|S30|asr1|eS30	FAU ubiquitin like and ribosomal protein S30 fusion	protein-coding
104599	chr17	81406701	81406900	+	0	NA	intron (NM_001377448, intron 2 of 27)	CpG	-6022	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
179354	chr4	183262051	183262750	+	0	NA	intron (NM_024949, intron 11 of 22)	intron (NM_024949, intron 11 of 22)	-21766	NR_126473	101928734		NR_126473	ENSG00000251128	WWC2-AS1	-	WWC2 antisense RNA 1	ncRNA
186801	chr5	139377101	139377300	+	0	NA	intron (NM_152685, intron 13 of 14)	intron (NM_152685, intron 13 of 14)	6097	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
134652	chr2	144446521	144446950	+	0	NA	intron (NM_014795, intron 2 of 9)	AluSx|SINE|Alu	-72879	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
101719	chr17	68526651	68526750	+	0	NA	intron (NM_212471, intron 7 of 10)	L1PA15|LINE|L1	11306	NM_001276290	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
231717	chr9	131745971	131746330	+	0	NA	Intergenic	AluSx|SINE|Alu	-6074	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
26219	chr10	14576201	14576400	+	0	NA	intron (NM_001282695, intron 2 of 5)	AluSg|SINE|Alu	-3925	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
165745	chr3	105726501	105726700	+	0	NA	intron (NM_001321822, intron 9 of 19)	L1PA7|LINE|L1	140991	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
212083	chr7	115217101	115217600	+	0	NA	intron (NR_126407, intron 1 of 4)	intron (NR_126407, intron 1 of 4)	14005	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
192935	chr6	27756951	27757700	+	0	NA	Intergenic	CpG	-4419	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
33314	chr10	114876321	114876580	+	0	NA	intron (NM_001135051, intron 16 of 16)	MIRb|SINE|MIR	54670	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
204204	chr7	2506921	2507380	+	0	NA	Intergenic	Intergenic	-5379	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
55170	chr12	100199001	100200200	+	0	NA	promoter-TSS (NM_022496)	promoter-TSS (NM_022496)	-487	NM_022496	64431		NM_022496	ENSG00000075089	ACTR6	ARP6|CDA12|HSPC281|MSTP136|hARP6|hARPX	actin related protein 6	protein-coding
88939	chr16	87835871	87836030	+	0	NA	intron (NM_003486, intron 8 of 9)	intron (NM_003486, intron 8 of 9)	-1290	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
155236	chr22	37930571	37931300	+	0	NA	intron (NM_033386, intron 9 of 15)	MIR3|SINE|MIR	22666	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
4433	chr1	21289251	21291200	+	0	NA	promoter-TSS (NM_001113349)	promoter-TSS (NM_001113349)	-10	NM_001113349	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
210385	chr7	99897671	99898230	+	0	NA	intron (NM_033017, intron 6 of 6)	intron (NM_033017, intron 6 of 6)	-20917	NM_001005276	81392		NM_001005276	ENSG00000244623	OR2AE1	OR2AE2	olfactory receptor family 2 subfamily AE member 1	protein-coding
185066	chr5	116135301	116135880	+	0	NA	intron (NM_016144, intron 5 of 6)	MER44A|DNA|TcMar-Tigger	50128	NM_001308080	51397		NM_016144	ENSG00000145781	COMMD10	PTD002	COMM domain containing 10	protein-coding
157944	chr22	49796701	49796900	+	0	NA	intron (NR_146335, intron 7 of 13)	intron (NR_146335, intron 7 of 13)	27531	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
56991	chr12	120563451	120563750	+	0	NA	exon (NM_014868, exon 9 of 17)	exon (NM_014868, exon 9 of 17)	17798	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
207365	chr7	44102671	44103030	+	0	NA	Intergenic	Intergenic	-1495	NM_001129	165		NM_001129	ENSG00000106624	AEBP1	ACLP	AE binding protein 1	protein-coding
134902	chr2	149537071	149537430	+	0	NA	Intergenic	Intergenic	-50108	NR_110240	101929231		NR_110240	ENSG00000231969	MMADHC-DT	-	MMADHC divergent transcript	ncRNA
108789	chr18	77259421	77259880	+	0	NA	intron (NM_001480, intron 2 of 2)	(GTG)n|Simple_repeat|Simple_repeat	9802	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
238787	chrX	154375901	154376200	+	0	NA	Intergenic	AluSg|SINE|Alu	-1412	NM_001456	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
91486	chr17	4897371	4897530	+	0	NA	TTS (NM_000080)	TTS (NM_000080)	-2086	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
41127	chr11	65567771	65568200	+	0	NA	Intergenic	AluJr|SINE|Alu	2428	NR_038923	254100		NR_038923		ZNRD2-DT	SSSCA1-AS1|ZNRD2-AS1	ZNRD2 divergent transcript	ncRNA
172470	chr4	2047321	2047580	+	0	NA	Intergenic	Intergenic	5455	NM_001141936	401115		NM_001141936	ENSG00000243449	NICOL1	C4orf48|CHR4_55|NICOL	NELL2 interacting cell ontogeny regulator 1	protein-coding
72993	chr15	40600201	40600480	+	0	NA	intron (NM_144508, intron 1 of 25)	AluSx1|SINE|Alu	6091	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
88288	chr16	83968001	83968830	+	0	NA	promoter-TSS (NM_001329748)	promoter-TSS (NM_001329748)	171	NM_019065	54550		NM_019065	ENSG00000103154	NECAB2	EFCBP2|stip-2	N-terminal EF-hand calcium binding protein 2	protein-coding
197702	chr6	85672551	85673680	+	0	NA	Intergenic	Intergenic	4253	NR_002743	26799		NR_002743		SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
220112	chr8	94590271	94590730	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-36982	NM_183009	25962		NM_015496	ENSG00000164944	VIRMA	KIAA1429|MSTP054|fSAP121	vir like m6A methyltransferase associated	protein-coding
72822	chr15	40115651	40116200	+	0	NA	Intergenic	Intergenic	-7046	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
151975	chr22	19145751	19145930	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1189	NM_022719	8220		NM_022719	ENSG00000100056	ESS2	DGCR13|DGCR14|DGS-H|DGS-I|DGSH|DGSI|ES2|ESS-2|Es2el|bis1	ess-2 splicing factor homolog	protein-coding
80970	chr16	3896471	3896650	+	0	NA	Intergenic	AluSc8|SINE|Alu	-15847	NM_004380	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
112219	chr19	5701401	5701600	+	0	NA	intron (NR_076392, intron 9 of 18)	SVA_D|Retroposon|SVA	11205	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
152299	chr22	20322151	20322250	+	0	NA	Intergenic	L1PA3|LINE|L1	-2140	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
83649	chr16	28309421	28310800	+	0	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	17585	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
54393	chr12	89935051	89935350	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-12493	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
68174	chr14	75984271	75984430	+	0	NA	Intergenic	Intergenic	-1339	NM_001329939	7043		NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
106542	chr18	21597951	21598250	+	0	NA	intron (NM_052911, intron 1 of 11)	intron (NM_052911, intron 1 of 11)	2604	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
130163	chr2	75627921	75628200	+	0	NA	Intergenic	U3|snRNA|snRNA	-18723	NM_014763	9801		NM_014763	ENSG00000115364	MRPL19	L15mt|L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15|bL19m	mitochondrial ribosomal protein L19	protein-coding
42630	chr11	72239151	72240280	+	0	NA	TTS (NM_001567)	TTS (NM_001567)	4461	NM_005169	401		NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2A	protein-coding
114584	chr19	12931901	12932100	+	0	NA	intron (NM_004461, intron 1 of 12)	MIR|SINE|MIR	1478	NR_149078	106144598		NR_149078	ENSG00000266975	FARSA-AS1	-	FARSA antisense RNA 1	ncRNA
238619	chrX	153948801	153949600	+	0	NA	3' UTR (NM_005334, exon 26 of 26)	3' UTR (NM_005334, exon 26 of 26)	-4557	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
56782	chr12	120189401	120189800	+	0	NA	intron (NM_006836, intron 2 of 57)	AluSg|SINE|Alu	5115	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
108617	chr18	76208821	76209080	+	0	NA	promoter-TSS (NR_146507)	promoter-TSS (NR_146507)	-560	NR_146507	105372207		NR_146507	ENSG00000264260	LINC01893	-	long intergenic non-protein coding RNA 1893	ncRNA
76112	chr15	72509651	72510000	+	0	NA	intron (NM_005744, intron 1 of 13)	AluJo|SINE|Alu	35495	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
9380	chr1	47311151	47311450	+	0	NA	intron (NM_003035, intron 1 of 16)	AluJb|SINE|Alu	2847	NM_001282936	6491		NM_003035	ENSG00000123473	STIL	MCPH7|SIL	STIL centriolar assembly protein	protein-coding
231560	chr9	131488671	131489100	+	0	NA	intron (NM_013318, intron 28 of 31)	L2|LINE|L2	-1601	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
239296	chrY	14524221	14525180	+	0	NA	non-coding (NR_028319, exon 1 of 6)	non-coding (NR_028319, exon 1 of 6)	126	NR_028319	22829		NM_014893	ENSG00000165246	NLGN4Y	HNL4Y	neuroligin 4 Y-linked	protein-coding
129549	chr2	69816951	69817400	+	0	NA	intron (NM_001320698, intron 11 of 14)	intron (NM_001320698, intron 11 of 14)	-12485	NM_178439	64395		NM_178439	ENSG00000087338	GMCL1	BTBD13|GCL|GCL1|SPATA29	germ cell-less 1, spermatogenesis associated	protein-coding
92684	chr17	13024171	13025230	+	0	NA	Intergenic	Intergenic	-6636	NM_001165962	60528		NM_018127	ENSG00000006744	ELAC2	COXPD17|ELC2|HPC2	elaC ribonuclease Z 2	protein-coding
19573	chr1	179215101	179215500	+	0	NA	intron (NM_007314, intron 1 of 11)	L1ME3G|LINE|L1	14377	NM_001168238	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
190751	chr6	431551	431650	+	0	NA	Intergenic	Intergenic	39848	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
217114	chr8	24977721	24977980	+	0	NA	Intergenic	Intergenic	-21238	NM_006158	4747		NM_006158	ENSG00000277586	NEFL	CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110	neurofilament light chain	protein-coding
32057	chr10	101064851	101065480	+	0	NA	3' UTR (NM_030929, exon 5 of 5)	3' UTR (NM_030929, exon 5 of 5)	-1218	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
156103	chr22	40079821	40080330	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluY|SINE|Alu	35258	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
162848	chr3	49332651	49333550	+	0	NA	intron (NM_199443, intron 2 of 20)	Tigger1|DNA|TcMar-Tigger	6953	NM_003363	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
234009	chrX	3695921	3696180	+	0	NA	intron (NM_005044, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	17599	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
104007	chr17	80104121	80104730	+	0	NA	intron (NM_000152, intron 1 of 19)	intron (NM_000152, intron 1 of 19)	2844	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
203933	chr7	1538051	1538830	+	0	NA	intron (NM_002360, intron 1 of 2)	intron (NM_002360, intron 1 of 2)	-3560	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
16294	chr1	154167651	154168030	+	0	NA	3' UTR (NM_152263, exon 10 of 10)	3' UTR (NM_152263, exon 10 of 10)	10364	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
186665	chr5	138633101	138633400	+	0	NA	Intergenic	Intergenic	-57849	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
40277	chr11	63840501	63841030	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	1655	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
95963	chr17	39098621	39098950	+	0	NA	intron (NM_020405, intron 7 of 13)	intron (NM_020405, intron 7 of 13)	41766	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
21482	chr1	205660621	205661150	+	0	NA	intron (NM_033102, intron 4 of 4)	intron (NM_033102, intron 4 of 4)	19624	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
84070	chr16	29596771	29596930	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	-1758	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
231689	chr9	131709771	131711100	+	0	NA	promoter-TSS (NM_198679)	promoter-TSS (NM_198679)	-593	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
101687	chr17	68414971	68415330	+	0	NA	intron (NM_001278433, intron 1 of 10)	L1PB1|LINE|L1	1527	NM_001278433	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
214928	chr7	151537721	151537980	+	0	NA	Intergenic	Intergenic	-17955	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
79054	chr16	117751	118580	+	0	NA	intron (NM_001243247, intron 5 of 14)	intron (NM_001243247, intron 5 of 14)	20508	NM_001077350	8131		NM_012075	ENSG00000103148	NPRL3	C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11	NPR3 like, GATOR1 complex subunit	protein-coding
150295	chr21	41973951	41974450	+	0	NA	Intergenic	Intergenic	-20182	NM_015500	25966		NM_015500	ENSG00000157617	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium dependent domain containing 2	protein-coding
110215	chr19	1752771	1752930	+	0	NA	promoter-TSS (NM_001080488)	promoter-TSS (NM_001080488)	-656	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
170682	chr3	187747771	187748430	+	0	NA	Intergenic	Intergenic	-2632	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
206088	chr7	27190921	27191380	+	0	NA	Intergenic	Intergenic	5742	NR_002795	221883		NR_002795	ENSG00000240990	HOXA11-AS	HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|LncHOXA11|NCRNA00076	HOXA11 antisense RNA	ncRNA
41099	chr11	65535071	65535650	+	0	NA	exon (NM_001048218, exon 10 of 18)	exon (NM_001048218, exon 10 of 18)	10277	NM_020680	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
45091	chr11	117082901	117083450	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	15253	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
233980	chrX	2707221	2707730	+	0	NA	intron (NR_135623, intron 1 of 10)	intron (NR_135623, intron 1 of 10)	16180	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
225241	chr9	34222071	34222630	+	0	NA	intron (NM_001171202, intron 2 of 5)	intron (NM_001171202, intron 2 of 5)	43307	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
100803	chr17	64054071	64054430	+	0	NA	exon (NM_001433, exon 15 of 22)	exon (NM_001433, exon 15 of 22)	-33616	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
93721	chr17	19513671	19514500	+	0	NA	Intergenic	Intergenic	-19769	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
239268	chrY	13478121	13478800	+	0	NA	promoter-TSS (NR_162134)	promoter-TSS (NR_162134)	-717	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
126126	chr2	26068071	26068230	+	0	NA	intron (NM_016131, intron 1 of 5)	L2b|LINE|L2	34066	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
189100	chr5	170311571	170312130	+	0	NA	intron (NR_147701, intron 1 of 1)	intron (NR_147701, intron 1 of 1)	866	NR_147701	100128059		NR_147701	ENSG00000250274	LOC100128059	-	uncharacterized LOC100128059	ncRNA
5477	chr1	25666571	25667130	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	-29305	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
13947	chr1	120344221	120345030	+	0	NA	Intergenic	MER31-int|LTR|ERV1	-70402	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
226620	chr9	73174951	73175050	+	0	NA	Intergenic	Intergenic	23135	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
20767	chr1	201007901	201008880	+	0	NA	intron (NM_017596, intron 3 of 33)	intron (NM_017596, intron 3 of 33)	15324	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
79542	chr16	893801	895180	+	0	NA	intron (NM_001352017, intron 5 of 11)	intron (NM_001352017, intron 5 of 11)	-26543	NR_110946	101929387		NR_110945	ENSG00000260439	LMF1-AS1	LA16c-366D3.1	LMF1 antisense RNA 1	ncRNA
65154	chr14	45251771	45252400	+	0	NA	intron (NM_018353, intron 1 of 16)	MIR|SINE|MIR	1117	NM_018353	55320		NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
234303	chrX	13711501	13711700	+	0	NA	TTS (NM_014563)	TTS (NM_014563)	22472	NM_004251	9367		NM_004251	ENSG00000123595	RAB9A	RAB9	RAB9A, member RAS oncogene family	protein-coding
117130	chr19	19270951	19271450	+	0	NA	intron (NM_001001524, intron 1 of 9)	intron (NM_001001524, intron 1 of 9)	2101	NM_001001524	53345		NM_203510	ENSG00000213996	TM6SF2	-	transmembrane 6 superfamily member 2	protein-coding
153482	chr22	26360271	26360800	+	0	NA	intron (NM_001184777, intron 12 of 14)	intron (NM_001184777, intron 12 of 14)	-68725	NM_020437	57168		NM_020437	ENSG00000128203	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
217636	chr8	30061821	30063050	+	0	NA	TTS (NM_001284239)	TTS (NM_001284239)	20629	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
174447	chr4	39704351	39705180	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluJb|SINE|Alu	6629	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
59102	chr13	21145521	21145780	+	0	NA	intron (NM_001366643, intron 3 of 4)	AluSx|SINE|Alu	5104	NM_001366643	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
229524	chr9	122817351	122817450	+	0	NA	TTS (NM_005388)	TTS (NM_005388)	11188	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
62733	chr13	106493571	106493800	+	0	NA	intron (NM_001372057, intron 3 of 3)	intron (NM_001372057, intron 3 of 3)	41977	NM_001372057	1948		NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5|ephrin-B2	ephrin B2	protein-coding
205416	chr7	16644051	16645100	+	0	NA	intron (NM_020319, intron 1 of 9)	intron (NM_020319, intron 1 of 9)	1179	NM_020319	57037		NM_020319	ENSG00000106524	ANKMY2	ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
28744	chr10	61986021	61986300	+	0	NA	intron (NM_032199, intron 3 of 9)	MIRc|SINE|MIR	-63197	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
18637	chr1	166869571	166869930	+	0	NA	intron (NM_053053, intron 2 of 7)	intron (NM_053053, intron 2 of 7)	6514	NM_053053	117143		NM_053053	ENSG00000152382	TADA1	ADA1|HFI1|STAF42|TADA1L|hADA1	transcriptional adaptor 1	protein-coding
93883	chr17	21125551	21126300	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1003	NM_015510	25979		NM_015510	ENSG00000109016	DHRS7B	CGI-93|SDR32C1	dehydrogenase/reductase 7B	protein-coding
96507	chr17	40319801	40320750	+	0	NA	intron (NM_001145301, intron 1 of 8)	intron (NM_001145301, intron 1 of 8)	2030	NM_001145302	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
61705	chr13	74087201	74088300	+	0	NA	intron (NM_007249, intron 1 of 7)	MIRb|SINE|MIR	46179	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
185098	chr5	119121901	119122350	+	0	NA	intron (NM_001290321, intron 9 of 43)	SVA_D|Retroposon|SVA	-32512	NR_049892	100847085		NR_049892	ENSG00000264536	MIR5706	-	microRNA 5706	ncRNA
149803	chr21	34985751	34986100	+	0	NA	intron (NM_001754, intron 2 of 8)	AluJb|SINE|Alu	53501	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
190939	chr6	2890451	2890950	+	0	NA	intron (NM_004155, intron 6 of 6)	intron (NM_004155, intron 6 of 6)	6712	NR_110841	101927730		NR_110841		SERPINB9-AS1	-	SERPINB9 antisense RNA 1	ncRNA
12239	chr1	100427851	100428550	+	0	NA	intron (NM_001319210, intron 5 of 16)	intron (NM_001319210, intron 5 of 16)	75694	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
212389	chr7	128071601	128072000	+	0	NA	intron (NM_014390, intron 16 of 23)	intron (NM_014390, intron 16 of 23)	-10061	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
118	chr1	492501	493150	+	0	NA	non-coding (NR_028322, exon 3 of 3)	non-coding (NR_028322, exon 3 of 3)	2620	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
160312	chr3	27483701	27485650	+	0	NA	promoter-TSS (NM_001321105)	promoter-TSS (NM_001321105)	-291	NM_001321103	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
132816	chr2	110560301	110560980	+	0	NA	intron (NM_001384362, intron 6 of 22)	AluY|SINE|Alu	16260	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
157022	chr22	42550521	42551000	+	0	NA	Intergenic	MER54B|LTR|ERVL	-3196	NR_104301	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
193167	chr6	29702301	29702850	+	0	NA	Intergenic	Intergenic	-20765	NM_018950	3134		NM_018950	ENSG00000204642	HLA-F	CDA12|HLA-5.4|HLA-CDA12|HLAF	major histocompatibility complex, class I, F	protein-coding
123260	chr19	53390071	53390400	+	0	NA	Intergenic	Intergenic	-4898	NR_146721	91661		NM_001040185	ENSG00000196417	ZNF765	-	zinc finger protein 765	protein-coding
12988	chr1	110914701	110914900	+	0	NA	Intergenic	L1ME3B|LINE|L1	41652	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
177981	chr4	139167801	139168200	+	0	NA	5' UTR (NM_001371324, exon 2 of 11)	5' UTR (NM_001371324, exon 2 of 11)	9218	NM_001371339	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
129988	chr2	74025901	74026750	+	0	NA	intron (NM_001366022, intron 2 of 10)	intron (NM_001366022, intron 2 of 10)	23633	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
219899	chr8	85737451	85737550	+	0	NA	TTS (NR_003594).4	TTS (NR_003594).4	1202	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
132531	chr2	106158151	106158250	+	0	NA	intron (NR_165308, intron 4 of 14)	intron (NR_165308, intron 4 of 14)	2437	NM_001377506	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
58150	chr12	124923521	124923780	+	0	NA	Intergenic	AluSg|SINE|Alu	8103	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
103332	chr17	77989951	77990530	+	0	NA	Intergenic	L2c|LINE|L2	-13997	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
49920	chr12	39627801	39628280	+	0	NA	intron (NR_135051, intron 1 of 18)	MER65C|LTR|ERV1	1857	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
84463	chr16	30450521	30451180	+	0	NA	Intergenic	Intergenic	-4976	NM_012248	22928		NM_012248	ENSG00000179918	SEPHS2	SPS2	selenophosphate synthetase 2	protein-coding
54023	chr12	75497001	75497200	+	0	NA	3' UTR (NM_007043, exon 10 of 10)	3' UTR (NM_007043, exon 10 of 10)	14509	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
169627	chr3	171284851	171284950	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	175505	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
85788	chr16	56946521	56948180	+	0	NA	Intergenic	Intergenic	-14600	NM_001286085	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
97842	chr17	44961121	44961380	+	0	NA	intron (NM_006688, intron 1 of 1)	intron (NM_006688, intron 1 of 1)	7053	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
120648	chr19	45074871	45075700	+	0	NA	promoter-TSS (NM_001319055)	promoter-TSS (NM_001319055)	-342	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
129576	chr2	70034451	70034830	+	0	NA	intron (NR_033872, intron 6 of 10)	intron (NR_033872, intron 6 of 10)	52375	NR_033872	400960		NR_033872	ENSG00000179818	PCBP1-AS1	Linc-GALH	PCBP1 antisense RNA 1	ncRNA
2261	chr1	8916971	8917330	+	0	NA	Intergenic	AluSc5|SINE|Alu	-28718	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
58411	chr12	131913821	131914400	+	0	NA	intron (NM_003565, intron 15 of 27)	G-rich|Low_complexity|Low_complexity	-15166	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
29681	chr10	72046901	72047300	+	0	NA	Intergenic	Tigger8|DNA|TcMar-Tigger	41451	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
70918	chr14	104136101	104136650	+	0	NA	intron (NR_158217, intron 2 of 2)	CpG	2254	NR_158217	105370708		NR_158217		KIF26A-DT	-	KIF26A divergent transcript	ncRNA
137731	chr2	197804301	197805430	+	0	NA	5' UTR (NM_006226, exon 1 of 6)	5' UTR (NM_006226, exon 1 of 6)	272	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
182944	chr5	71066651	71067000	+	0	NA	intron (NM_001364567, intron 1 of 16).4	intron (NM_001364567, intron 1 of 16).4	845	NM_001515	2966		NM_001515	ENSG00000145736	GTF2H2	BTF2|BTF2 p44|BTF2P44|T-BTF2P44|TFIIH|p44	general transcription factor IIH subunit 2	protein-coding
215481	chr7	158338751	158339050	+	0	NA	intron (NM_130842, intron 1 of 21)	intron (NM_130842, intron 1 of 21)	193913	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
196070	chr6	42224401	42224800	+	0	NA	TTS (NM_001297573)	TTS (NM_001297573)	-6739	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
118565	chr19	36212371	36212880	+	0	NA	intron (NM_001366189, intron 1 of 5)	AluSz|SINE|Alu	954	NM_001366189	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
167429	chr3	129034721	129035130	+	0	NA	intron (NM_024768, intron 5 of 7)	MLT1K|LTR|ERVL-MaLR	-25854	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
194931	chr6	35140921	35141480	+	0	NA	intron (NM_001370687, intron 1 of 9)	CpG	139	NM_001366324	6954		NM_018679	ENSG00000124678	TCP11	D6S230E|FPPR	t-complex 11	protein-coding
200233	chr6	131640151	131640250	+	0	NA	intron (NM_005021, intron 1 of 24)	intron (NM_005021, intron 1 of 24)	2898	NM_005021	5169		NM_005021	ENSG00000154269	ENPP3	B10|CD203c|NPP3|PD-IBETA|PDNP3	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding
50892	chr12	49267751	49268650	+	0	NA	intron (NM_032704, intron 1 of 3)	AluSx|SINE|Alu	3118	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
5425	chr1	25555671	25556180	+	0	NA	intron (NM_015627, intron 3 of 8)	L2c|LINE|L2	12319	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
27846	chr10	38919721	38920000	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	223264	NR_045000	399746		NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
24310	chr1	236797101	236797380	+	0	NA	intron (NM_000254, intron 1 of 32)	intron (NM_000254, intron 1 of 32)	1948	NM_000254	4548		NM_000254	ENSG00000116984	MTR	HMAG|MS|cblG	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
50923	chr12	49335871	49336350	+	0	NA	exon (NM_001008223, exon 1 of 2)	exon (NM_001008223, exon 1 of 2)	1078	NM_001008223	338761		NM_001008223	ENSG00000186897	C1QL4	C1QTNF11|CTRP11	complement C1q like 4	protein-coding
145504	chr20	43958971	43960100	+	0	NA	intron (NM_032883, intron 2 of 9)	intron (NM_032883, intron 2 of 9)	13639	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
89227	chr16	88630351	88631150	+	0	NA	intron (NM_144604, intron 17 of 17)	(CCCA)n|Simple_repeat|Simple_repeat	-7822	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
226174	chr9	64642221	64642700	+	0	NA	intron (NR_160670, intron 3 of 4)	intron (NR_160670, intron 3 of 4)	2726	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
91295	chr17	4175821	4176950	+	0	NA	intron (NM_001330063, intron 19 of 24)	intron (NM_001330063, intron 19 of 24)	32688	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
178278	chr4	144174421	144174780	+	0	NA	Intergenic	Intergenic	-33882	NM_001308187	2993		NM_002099	ENSG00000170180	GYPA	CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2	glycophorin A (MNS blood group)	protein-coding
211863	chr7	111015221	111015880	+	0	NA	intron (NM_032549, intron 3 of 5)	L1MB2|LINE|L1	-75456	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
98583	chr17	47728401	47728880	+	0	NA	Intergenic	Intergenic	-4596	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
225823	chr9	37786671	37787330	+	0	NA	Intergenic	Intergenic	-1908	NM_001002269	51010		NM_016042	ENSG00000107371	EXOSC3	CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10	exosome component 3	protein-coding
130310	chr2	84945671	84946830	+	0	NA	Intergenic	Intergenic	-24911	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
138098	chr2	202264801	202266300	+	0	NA	promoter-TSS (NM_015934)	promoter-TSS (NM_015934)	-213	NM_015934	51602		NM_015934	ENSG00000055044	NOP58	HSPC120|NOP5|NOP5/NOP58	NOP58 ribonucleoprotein	protein-coding
74018	chr15	52175551	52175650	+	0	NA	intron (NM_016194, intron 3 of 12)	AluSx|SINE|Alu	4091	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
118472	chr19	35895271	35895430	+	0	NA	intron (NM_001365706, intron 9 of 9)	AluSz|SINE|Alu	4387	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
223183	chr8	143561601	143561800	+	0	NA	intron (NM_001166237, intron 9 of 13).2	intron (NM_001166237, intron 9 of 13).2	3354	NM_024736	79792		NM_024736	ENSG00000104518	GSDMD	DF5L|DFNA5L|FKSG10|GSDMDC1	gasdermin D	protein-coding
204810	chr7	5666451	5666900	+	0	NA	non-coding (NR_046834, exon 2 of 3)	non-coding (NR_046834, exon 2 of 3)	13786	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
85123	chr16	34582791	34583840	+	0	NA	Intergenic	Intergenic	-201835	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
163089	chr3	50098001	50098200	+	0	NA	intron (NR_036627, intron 4 of 23)	AluSx|SINE|Alu	2888	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
179942	chr5	773621	773880	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	10979	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
124356	chr19	58349051	58349550	+	0	NA	intron (NM_130786, intron 6 of 7)	AluSq|SINE|Alu	-2670	NR_015380	503538		NR_015380	ENSG00000268895	A1BG-AS1	A1BG-AS|A1BGAS|NCRNA00181	A1BG antisense RNA 1	ncRNA
88106	chr16	81545951	81546050	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	12098	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
91260	chr17	3973771	3973930	+	0	NA	Intergenic	L2c|LINE|L2	-3253	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
10407	chr1	65235901	65236180	+	0	NA	Intergenic	L1MC4|LINE|L1	-28654	NM_001256865	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
6559	chr1	28667951	28669400	+	0	NA	promoter-TSS (NM_006582)	promoter-TSS (NM_006582)	-109	NM_024482	10691		NM_006582	ENSG00000162419	GMEB1	P96PIF|PIF96	glucocorticoid modulatory element binding protein 1	protein-coding
187299	chr5	141601971	141602380	+	0	NA	intron (NM_005219, intron 1 of 27)	intron (NM_005219, intron 1 of 27)	16825	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
114036	chr19	10941671	10942380	+	0	NA	Intergenic	Intergenic	13214	NM_138358	90580		NM_138358	ENSG00000142444	TIMM29	C19orf52|TIM29	translocase of inner mitochondrial membrane 29	protein-coding
221755	chr8	127792671	127793150	+	0	NA	Intergenic	Intergenic	-1623	NR_003367	5820		NR_003367	ENSG00000249859	PVT1	LINC00079|MIR1204HG|NCRNA00079|TP53LC09|onco-lncRNA-100	Pvt1 oncogene	ncRNA
139407	chr2	222424921	222425550	+	0	NA	intron (NM_152386, intron 1 of 4)	CpG	692	NM_152386	130367		NM_152386	ENSG00000163082	SGPP2	SPP2|SPPase2	sphingosine-1-phosphate phosphatase 2	protein-coding
102152	chr17	75111651	75112050	+	0	NA	intron (NM_024585, intron 2 of 2)	L2a|LINE|L2	1881	NM_001304273	79637		NM_024585	ENSG00000125449	ARMC7	-	armadillo repeat containing 7	protein-coding
230334	chr9	127990851	127991550	+	0	NA	Intergenic	Intergenic	-10211	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
128151	chr2	48420121	48421180	+	0	NA	Intergenic	Intergenic	-20116	NM_001135629	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
209409	chr7	76346071	76346230	+	0	NA	intron (NM_012479, intron 1 of 1)	intron (NM_012479, intron 1 of 1)	12841	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
118104	chr19	34469151	34469250	+	0	NA	exon (NM_005499, exon 17 of 17)	exon (NM_005499, exon 17 of 17)	-12558	NM_001080436	126374		NM_001080436	ENSG00000142279	WTIP	-	WT1 interacting protein	protein-coding
194759	chr6	34043751	34044050	+	0	NA	intron (NM_001256811, intron 5 of 9)	intron (NM_001256811, intron 5 of 9)	-43849	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275|mir-1275	microRNA 1275	ncRNA
173714	chr4	15777451	15777550	+	0	NA	promoter-TSS (NM_001775)	promoter-TSS (NM_001775)	-828	NM_001775	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
179024	chr4	165111451	165111550	+	0	NA	intron (NM_001100389, intron 1 of 5)	intron (NM_001100389, intron 1 of 5)	1360	NM_001100389	201931		NM_152681	ENSG00000170088	TMEM192	-	transmembrane protein 192	protein-coding
166374	chr3	113051051	113051630	+	0	NA	Intergenic	Intergenic	-31669	NM_001319109	25871		NM_015412	ENSG00000163608	NEPRO	ANXD3|C3orf17|NET17	nucleolus and neural progenitor protein	protein-coding
138066	chr2	201707251	201707350	+	0	NA	intron (NM_020919, intron 28 of 33)	intron (NM_020919, intron 28 of 33)	-8656	NM_033066	58538		NM_033066	ENSG00000082126	MPP4	ALS2CR5|DLG6	MAGUK p55 scaffold protein 4	protein-coding
193239	chr6	29926271	29927780	+	0	NA	non-coding (NR_001317, exon 1 of 1)	non-coding (NR_001317, exon 1 of 1)	190	NR_001317	80868		NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B	ncRNA
207957	chr7	54788701	54788930	+	0	NA	intron (NR_110040, intron 2 of 2)	MIRb|SINE|MIR	29502	NR_110040	100996654		NR_110040	ENSG00000234707	SEC61G-DT	-	SEC61G divergent transcript	ncRNA
137959	chr2	201151301	201152030	+	0	NA	intron (NR_040030, intron 2 of 6)	intron (NR_040030, intron 2 of 6)	6127	NR_040030	65072		NR_040030	ENSG00000226312	CFLAR-AS1	ALS2CR10	CFLAR antisense RNA 1	ncRNA
164900	chr3	71117871	71118230	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	12536	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
230001	chr9	126911321	126911800	+	0	NA	Intergenic	L1MB8|LINE|L1	-3214	NM_001190729	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
57034	chr12	120709971	120711930	+	0	NA	intron (NM_001080533, intron 1 of 4)	CpG	492	NM_001080533	84747		NM_032661	ENSG00000175970	UNC119B	POC7B	unc-119 lipid binding chaperone B	protein-coding
120960	chr19	45703321	45703580	+	0	NA	3' UTR (NM_001163377, exon 6 of 6)	3' UTR (NM_001163377, exon 6 of 6)	10784	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
140138	chr2	231563371	231563650	+	0	NA	Intergenic	Intergenic	-29354	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
67946	chr14	74788201	74788800	+	0	NA	intron (NM_019589, intron 4 of 20)	Looper|DNA|PiggyBac	25184	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
226402	chr9	70410671	70411800	+	0	NA	intron (NM_001206, intron 1 of 1)	intron (NM_001206, intron 1 of 1)	3422	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
69559	chr14	96762651	96762980	+	0	NA	intron (NR_146552, intron 3 of 3)	MLT1J|LTR|ERVL-MaLR	21624	NR_146552	105370646		NR_146552	ENSG00000258979	LINC02299	-	long intergenic non-protein coding RNA 2299	ncRNA
40757	chr11	64843071	64843300	+	0	NA	intron (NM_017525, intron 1 of 36)	intron (NM_017525, intron 1 of 36)	1468	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
184218	chr5	95973571	95974270	+	0	NA	intron (NR_130776, intron 1 of 4)	intron (NR_130776, intron 1 of 4)	11919	NR_130776	101929710		NR_130776	ENSG00000251314	LOC101929710	-	uncharacterized LOC101929710	ncRNA
164650	chr3	66496521	66497200	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	3194	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
163383	chr3	50493871	50494730	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	9334	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
137609	chr2	197297671	197298180	+	0	NA	intron (NR_046837, intron 3 of 5)	intron (NR_046837, intron 3 of 5)	4594	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
207607	chr7	44975951	44976450	+	0	NA	intron (NM_033054, intron 3 of 21)	intron (NM_033054, intron 3 of 21)	2815	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
82414	chr16	16239451	16240350	+	0	NA	intron (NM_173614, intron 3 of 30)	intron (NM_173614, intron 3 of 30)	7305	NM_173614	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
104834	chr17	81828551	81828850	+	0	NA	intron (NM_001288798, intron 1 of 6)	intron (NM_001288798, intron 1 of 6)	4591	NM_001288798	348262		NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
41329	chr11	65912971	65913330	+	0	NA	Intergenic	Intergenic	5912	NM_031450	83638		NM_031450	ENSG00000175573	C11orf68	BLES03|P5326	chromosome 11 open reading frame 68	protein-coding
230280	chr9	127929801	127932100	+	0	NA	promoter-TSS (NM_001135219)	promoter-TSS (NM_001135219)	-173	NM_001135219	138429		NM_173492	ENSG00000167103	PIP5KL1	PIPKH	phosphatidylinositol-4-phosphate 5-kinase like 1	protein-coding
45321	chr11	118180121	118180580	+	0	NA	Intergenic	Intergenic	-3711	NM_004588	6327		NM_004588	ENSG00000149575	SCN2B	ATFB14	sodium voltage-gated channel beta subunit 2	protein-coding
1663	chr1	3890861	3891600	+	0	NA	intron (NM_207356, intron 2 of 3)	intron (NM_207356, intron 2 of 3)	9042	NM_207356	339448		NM_207356	ENSG00000198912	C1orf174	-	chromosome 1 open reading frame 174	protein-coding
237052	chrX	103310221	103311200	+	0	NA	5' UTR (NM_001168400, exon 1 of 3)	5' UTR (NM_001168400, exon 1 of 3)	245	NM_001168399	84707		NM_032621	ENSG00000133134	BEX2	BEX1|DJ79P11.1	brain expressed X-linked 2	protein-coding
153995	chr22	30396651	30397900	+	0	NA	intron (NM_001291932, intron 1 of 10)	CpG	257	NM_001291932	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
113915	chr19	10701201	10702580	+	0	NA	intron (NM_031209, intron 1 of 9)	L2b|LINE|L2	451	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
93130	chr17	17726051	17727230	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	39662	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
186307	chr5	134575171	134576180	+	0	NA	intron (NM_015288, intron 10 of 10)	AluJr|SINE|Alu	49567	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
134535	chr2	143680571	143680930	+	0	NA	intron (NM_018460, intron 12 of 13)	intron (NM_018460, intron 12 of 13)	-256317	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
173613	chr4	11149021	11149280	+	0	NA	Intergenic	L1PA3|LINE|L1	-219677	NR_030298	693157		NR_030298	ENSG00000207716	MIR572	MIRN572|hsa-mir-572	microRNA 572	ncRNA
141947	chr20	1279501	1279700	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	13306	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
182022	chr5	55438651	55438950	+	0	NA	intron (NM_176895, intron 4 of 5)	AluY|SINE|Alu	70126	NR_049869	100847019		NR_049869	ENSG00000265135	MIR5687	-	microRNA 5687	ncRNA
9850	chr1	54264571	54264730	+	0	NA	intron (NM_145716, intron 5 of 17)	intron (NM_145716, intron 5 of 17)	28207	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
57817	chr12	123150321	123151900	+	0	NA	promoter-TSS (NM_020845)	promoter-TSS (NM_020845)	-20	NM_001384661	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
150413	chr21	42398001	42398830	+	0	NA	Intergenic	Intergenic	-2363	NM_032405	64699		NM_024022	ENSG00000160183	TMPRSS3	DFNB10|DFNB8|ECHOS1|TADG12	transmembrane serine protease 3	protein-coding
43184	chr11	75404321	75405100	+	0	NA	TTS (NR_000025)	TTS (NR_000025)	289	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
110493	chr19	2039901	2040650	+	0	NA	intron (NM_199054, intron 12 of 13)	intron (NM_199054, intron 12 of 13)	10969	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
192502	chr6	24999271	24999700	+	0	NA	intron (NM_001286446, intron 1 of 13)	MER41E|LTR|ERV1	42803	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
109138	chr18	80181521	80181780	+	0	NA	intron (NM_032510, intron 2 of 2)	intron (NM_032510, intron 2 of 2)	33726	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
161251	chr3	39239921	39240380	+	0	NA	Intergenic	L1PA13|LINE|L1	39886	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
81616	chr16	10749071	10749550	+	0	NA	intron (NM_001323594, intron 3 of 8)	intron (NM_001323594, intron 3 of 8)	5441	NM_001323597	4682		NM_002484	ENSG00000103274	NUBP1	CIAO5|NBP|NBP1|NBP35	NUBP iron-sulfur cluster assembly factor 1, cytosolic	protein-coding
25244	chr10	6046051	6046730	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	15977	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
106797	chr18	23918451	23919250	+	0	NA	intron (NM_198129, intron 60 of 74)	intron (NM_198129, intron 60 of 74)	45830	NM_001127718	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
148322	chr20	63749001	63749350	+	0	NA	intron (NM_025224, intron 4 of 4)	intron (NM_025224, intron 4 of 4)	9399	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
236799	chrX	79151921	79152250	+	0	NA	intron (NM_032553, intron 1 of 2)	intron (NM_032553, intron 1 of 2)	7397	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
145165	chr20	38850351	38851030	+	0	NA	intron (NM_001172735, intron 2 of 9)	AluSx1|SINE|Alu	44993	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
53032	chr12	57604691	57605880	+	0	NA	intron (NM_001286245, intron 1 of 5)	intron (NM_001286245, intron 1 of 5)	461	NM_178502	196403		NM_178502	ENSG00000178498	DTX3	RNF154|deltex3	deltex E3 ubiquitin ligase 3	protein-coding
144823	chr20	36833951	36834250	+	0	NA	intron (NM_080627, intron 2 of 14)	AluSz|SINE|Alu	25773	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
139044	chr2	218658951	218660450	+	0	NA	promoter-TSS (NM_001367340)	promoter-TSS (NM_001367340)	17	NM_001371443	617		NM_004328	ENSG00000074582	BCS1L	BCS|BCS1|BJS|FLNMS|GRACILE|Hs.6719|MC3DN1|PTD|h-BCS|h-BCS1	BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone	protein-coding
2870	chr1	11364201	11364450	+	0	NA	Intergenic	Intergenic	91127	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
208078	chr7	56091351	56091450	+	0	NA	intron (NR_047689, intron 1 of 8)	AluY|SINE|Alu	1552	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
15220	chr1	149465921	149466180	+	0	NA	TTS (NM_001364013)	TTS (NM_001364013)	-9848	NM_001351365	101060226		NM_001351365	ENSG00000271383	NBPF19	-	NBPF member 19	protein-coding
193148	chr6	29632801	29634230	+	0	NA	promoter-TSS (NM_001319053)	promoter-TSS (NM_001319053)	-332	NM_001470	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
114262	chr19	11558501	11559680	+	0	NA	intron (NM_001363675, intron 1 of 5)	CpG	140	NM_001363675	84337		NM_032377	ENSG00000130165	ELOF1	ELF1	elongation factor 1	protein-coding
59968	chr13	31934251	31934350	+	0	NA	intron (NR_027062, intron 1 of 3)	intron (NR_027062, intron 1 of 3)	87517	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
214551	chr7	150554101	150554300	+	0	NA	Intergenic	L1PREC2|LINE|L1	-13170	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
143976	chr20	32852071	32852430	+	0	NA	Intergenic	MIRc|SINE|MIR	-6673	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
108910	chr18	79432471	79432630	+	0	NA	intron (NM_172389, intron 2 of 9)	intron (NM_172389, intron 2 of 9)	32251	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
224504	chr9	19048671	19051700	+	0	NA	promoter-TSS (NM_001287049)	promoter-TSS (NM_001287049)	758	NM_006570	10670		NM_006570	ENSG00000155876	RRAGA	FIP-1|FIP1|RAGA	Ras related GTP binding A	protein-coding
104050	chr17	80142701	80142900	+	0	NA	intron (NM_014740, intron 2 of 11)	AluJo|SINE|Alu	4328	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
23409	chr1	228277301	228277680	+	0	NA	intron (NM_052843, intron 24 of 80)	intron (NM_052843, intron 24 of 80)	-63826	NR_073154	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
34927	chr11	428971	429130	+	0	NA	intron (NM_001347882, intron 10 of 21)	intron (NM_001347882, intron 10 of 21)	-11653	NM_001135053	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
92643	chr17	10168401	10168800	+	0	NA	intron (NM_201433, intron 1 of 13)	MER106A|DNA|hAT-Charlie	30006	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
140249	chr2	232038401	232038600	+	0	NA	intron (NR_046477, intron 5 of 18)	intron (NR_046477, intron 5 of 18)	76787	NM_152383	129563		NM_152383	ENSG00000144535	DIS3L2	FAM6A|PRLMNS|hDIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein-coding
68921	chr14	91368721	91369280	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	48820	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
7429	chr1	32966671	32967030	+	0	NA	Intergenic	AluJb|SINE|Alu	-2041	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
27427	chr10	31602421	31602750	+	0	NA	Intergenic	Intergenic	-202830	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
101980	chr17	74751201	74752330	+	0	NA	intron (NM_004252, intron 1 of 5)	intron (NM_004252, intron 1 of 5)	3137	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
162438	chr3	48439701	48441050	+	0	NA	promoter-TSS (NM_001256967)	promoter-TSS (NM_001256967)	118	NM_001329417	51372		NM_015933	ENSG00000232112	TMA7	CCDC72|HSPC016	translation machinery associated 7 homolog	protein-coding
70852	chr14	103704871	103705530	+	0	NA	intron (NM_001371232, intron 6 of 9)	intron (NM_001371232, intron 6 of 9)	10251	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
187277	chr5	141552371	141552730	+	0	NA	intron (NM_005219, intron 17 of 27)	MLT1D|LTR|ERVL-MaLR	-5761	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
174468	chr4	39809071	39809230	+	0	NA	Intergenic	AluY|SINE|Alu	111014	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
126242	chr2	27073871	27074030	+	0	NA	Intergenic	Intergenic	-2296	NM_001134693	100128731		NM_001134693	ENSG00000228474	OST4	-	oligosaccharyltransferase complex subunit 4, non-catalytic	protein-coding
61880	chr13	77298521	77298780	+	0	NA	intron (NM_015057, intron 1 of 82)	intron (NM_015057, intron 1 of 82)	28444	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
231332	chr9	130170751	130170850	+	0	NA	Intergenic	Intergenic	-1604	NM_014286	23413		NM_014286	ENSG00000107130	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
184120	chr5	94574151	94574250	+	0	NA	intron (NM_001385723, intron 1 of 4)	intron (NM_001385723, intron 1 of 4)	43925	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
55527	chr12	105321271	105321780	+	0	NA	intron (NR_131986, intron 1 of 2)	MLT1N2|LTR|ERVL-MaLR	5492	NR_131986	105369954		NR_131986	ENSG00000257642	C12orf75-AS1	KCCAT198	C12orf75 antisense RNA 1	ncRNA
8797	chr1	42930201	42930400	+	0	NA	intron (NM_006516, intron 4 of 9)	intron (NM_006516, intron 4 of 9)	28568	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
120305	chr19	43476621	43476880	+	0	NA	intron (NM_198850, intron 15 of 15)	Charlie8|DNA|hAT-Charlie	-11142	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
18838	chr1	167700571	167700730	+	0	NA	intron (NM_001322923, intron 5 of 5)	AluY|SINE|Alu	-21332	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
169452	chr3	167736671	167736830	+	0	NA	intron (NM_005025, intron 1 of 8)	intron (NM_005025, intron 1 of 8)	1027	NM_005025	5274		NM_005025	ENSG00000163536	SERPINI1	HNS-S1|HNS-S2|PI12|neuroserpin	serpin family I member 1	protein-coding
191169	chr6	4916751	4917450	+	0	NA	intron (NM_001368126, intron 2 of 6)	intron (NM_001368126, intron 2 of 6)	27060	NM_001143971	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
122003	chr19	48587971	48588130	+	0	NA	intron (NM_177973, intron 3 of 6)	AluSx1|SINE|Alu	12314	NM_004605	6820		NM_004605	ENSG00000088002	SULT2B1	ARCI14|HSST2	sulfotransferase family 2B member 1	protein-coding
19605	chr1	179836571	179836850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	32130	NM_001349933	163590		NM_022347	ENSG00000169905	TOR1AIP2	IFRG15|LULL1|NET9	torsin 1A interacting protein 2	protein-coding
170033	chr3	181710301	181710850	+	0	NA	intron (NR_075089, intron 3 of 3)	intron (NR_075089, intron 3 of 3)	-1350	NM_003106	6657		NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box transcription factor 2	protein-coding
147125	chr20	54103421	54103700	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-32795	NM_003657	8537		NM_003657	ENSG00000064787	BCAS1	AIBC1|NABC1|PMES-2	brain enriched myelin associated protein 1	protein-coding
30027	chr10	73794071	73794230	+	0	NA	non-coding (NR_160292, exon 13 of 27)	non-coding (NR_160292, exon 13 of 27)	7249	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
29389	chr10	70122121	70122530	+	0	NA	intron (NM_032797, intron 3 of 8)	intron (NM_032797, intron 3 of 8)	10500	NM_032797	84883		NM_032797	ENSG00000042286	AIFM2	AMID|FSP1|PRG3	apoptosis inducing factor mitochondria associated 2	protein-coding
192706	chr6	26321921	26323130	+	0	NA	Intergenic	AluSq4|SINE|Alu	-36991	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
219371	chr8	70375521	70375780	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	27740	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
239247	chrY	13264321	13264580	+	0	NA	intron (NR_047603, intron 26 of 28)	L1PA7|LINE|L1	-214727	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
109249	chr19	517271	517850	+	0	NA	intron (NM_033513, intron 1 of 1)	intron (NM_033513, intron 1 of 1)	10063	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
41570	chr11	66331871	66332030	+	0	NA	3' UTR (NM_001363559, exon 10 of 10)	3' UTR (NM_001363559, exon 10 of 10)	4484	NM_001363560	9610		NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding
14208	chr1	143187071	143187380	+	0	NA	Intergenic	Intergenic	235367	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
239323	chrY	18325671	18326550	+	0	NA	promoter-TSS (NR_002161).2	promoter-TSS (NR_002161).2	-423	NR_002161	401630		NR_002161		FAM224A	LINC00230A|NCRNA00230A	family with sequence similarity 224 member A	ncRNA
164365	chr3	58172921	58173180	+	0	NA	TTS (NM_001164318)	TTS (NM_001164318)	-2415	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
48066	chr12	7112401	7112600	+	0	NA	intron (NR_026947, intron 6 of 11)	Charlie1|DNA|hAT-Charlie	-3286	NM_001297640	51279		NM_016546	ENSG00000139178	C1RL	C1RL1|C1RLP|C1r-LP|CLSPa	complement C1r subcomponent like	protein-coding
172335	chr4	1692171	1692530	+	0	NA	TTS (NM_001306074)	TTS (NM_001306074)	-8037	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
60413	chr13	40974651	40975450	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	7232	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
167204	chr3	128383501	128383750	+	0	NA	intron (NM_021937, intron 6 of 6)	intron (NM_021937, intron 6 of 6)	-79969	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
18131	chr1	160740101	160740530	+	0	NA	intron (NM_001282590, intron 1 of 5)	intron (NM_001282590, intron 1 of 5)	1068	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
47182	chr12	797901	798480	+	0	NA	intron (NM_018979, intron 1 of 27)	AluY|SINE|Alu	45267	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
174837	chr4	48370271	48370430	+	0	NA	intron (NM_020846, intron 2 of 7)	MIRb|SINE|MIR	28821	NM_020846	57606		NM_020846	ENSG00000109171	SLAIN2	KIAA1458	SLAIN motif family member 2	protein-coding
219658	chr8	80491021	80491780	+	0	NA	intron (NM_023929, intron 1 of 6)	Tigger3c|DNA|TcMar-Tigger	5174	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
45629	chr11	118925501	118927280	+	0	NA	promoter-TSS (NR_165445)	promoter-TSS (NR_165445)	-464	NM_001378213	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
41621	chr11	66429771	66430780	+	0	NA	Intergenic	MIRb|SINE|MIR	8573	NR_120588	65003		NM_016050	ENSG00000174547	MRPL11	CGI-113|L11MT|MRP-L11|uL11m	mitochondrial ribosomal protein L11	protein-coding
28783	chr10	62059501	62059900	+	0	NA	intron (NM_001244638, intron 4 of 6)	intron (NM_001244638, intron 4 of 6)	10343	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
122309	chr19	49121201	49121500	+	0	NA	intron (NR_103842, intron 1 of 28)	AluJb|SINE|Alu	1806	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
116995	chr19	18895021	18895280	+	0	NA	intron (NM_001290265, intron 1 of 5)	intron (NM_001290265, intron 1 of 5)	1008	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
162867	chr3	49364221	49364800	+	0	NA	intron (NM_001313947, intron 2 of 3)	AluSp|SINE|Alu	-5910	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
156915	chr22	42278501	42278700	+	0	NA	intron (NM_005650, intron 1 of 5)	intron (NM_005650, intron 1 of 5)	5327	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
93844	chr17	20995701	20996100	+	0	NA	Intergenic	Intergenic	47111	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
115040	chr19	14116451	14116750	+	0	NA	intron (NM_002730, intron 1 of 9)	intron (NM_002730, intron 1 of 9)	1162	NM_002730	5566		NM_002730	ENSG00000072062	PRKACA	CAFD1|PKACA|PPNAD4	protein kinase cAMP-activated catalytic subunit alpha	protein-coding
129772	chr2	71082371	71083280	+	0	NA	Intergenic	MIRb|SINE|MIR	14177	NM_001365466	55577		NM_017567	ENSG00000124357	NAGK	GNK|HSA242910	N-acetylglucosamine kinase	protein-coding
205541	chr7	19772901	19773100	+	0	NA	promoter-TSS (NM_152774)	promoter-TSS (NM_152774)	-219	NM_152774	256130		NM_152774	ENSG00000173452	TMEM196	-	transmembrane protein 196	protein-coding
84599	chr16	30665001	30665850	+	0	NA	intron (NM_001105079, intron 10 of 17)	intron (NM_001105079, intron 10 of 17)	6994	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
197381	chr6	73488421	73488680	+	0	NA	intron (NM_133645, intron 10 of 12)	L1MB2|LINE|L1	26813	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
176693	chr4	101013621	101014030	+	0	NA	Intergenic	Intergenic	227047	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
160737	chr3	32466871	32467030	+	0	NA	Intergenic	Intergenic	35902	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
219908	chr8	86044121	86044380	+	0	NA	Intergenic	Intergenic	25418	NM_033126	85481		NM_033126	ENSG00000147613	PSKH2	-	protein serine kinase H2	protein-coding
508	chr1	1200251	1200350	+	0	NA	Intergenic	Intergenic	6292	NM_148902	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
21980	chr1	209672951	209673650	+	0	NA	intron (NR_134510, intron 1 of 2)	intron (NR_134510, intron 1 of 2)	1949	NR_134511	101930114		NR_134509	ENSG00000227591	HSD11B1-AS1	-	HSD11B1 antisense RNA 1	ncRNA
32441	chr10	102608501	102608700	+	0	NA	intron (NM_001178133, intron 8 of 10)	L3|LINE|CR1	-35879	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
195691	chr6	38638171	38638330	+	0	NA	intron (NM_052893, intron 1 of 11)	intron (NM_052893, intron 1 of 11)	1679	NM_052893	114781		NM_052893	ENSG00000183826	BTBD9	dJ322I12.1	BTB domain containing 9	protein-coding
224165	chr9	4991571	4991930	+	0	NA	intron (NM_001322199, intron 2 of 24)	L2|LINE|L2	6478	NM_004972	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
109027	chr18	79728001	79728200	+	0	NA	intron (NM_048368, intron 10 of 11)	AluSz|SINE|Alu	46670	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
165469	chr3	98812871	98813100	+	0	NA	intron (NM_080927, intron 9 of 15)	intron (NM_080927, intron 9 of 15)	49678	NM_001323367	10402		NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
239029	chrY	3443801	3444000	+	0	NA	Intergenic	L1HS|LINE|L1	-135167	NM_139214	90655		NM_139214	ENSG00000176679	TGIF2LY	TGIFLY	TGFB induced factor homeobox 2 like Y-linked	protein-coding
85316	chr16	49698471	49698630	+	0	NA	intron (NM_001379286, intron 3 of 7)	CpG	-34226	NM_001330533	23090		NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
152026	chr22	19443701	19444980	+	0	NA	exon (NM_173793, exon 3 of 3)	exon (NM_173793, exon 3 of 3)	3371	NM_001166242	128977		NM_173793	ENSG00000242259	C22orf39	Pants	chromosome 22 open reading frame 39	protein-coding
137812	chr2	200372871	200373400	+	0	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	64185	NM_001282744	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
200421	chr6	134906721	134907130	+	0	NA	Intergenic	AluJr|SINE|Alu	43176	NM_170771	64577		NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding
106779	chr18	23837671	23837850	+	0	NA	intron (NM_198129, intron 25 of 74)	intron (NM_198129, intron 25 of 74)	-35260	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
236777	chrX	79084001	79084200	+	0	NA	Intergenic	Intergenic	-60588	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
82889	chr16	21599021	21600730	+	0	NA	promoter-TSS (NR_110930)	promoter-TSS (NR_110930)	298	NM_016025	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
103717	chr17	78834701	78834900	+	0	NA	intron (NR_169585, intron 4 of 19)	intron (NR_169585, intron 4 of 19)	6014	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
233719	chrX	1335701	1335900	+	0	NA	promoter-TSS (NM_002183).2	promoter-TSS (NM_002183).2	-816	NM_001267713	3563		NM_002183	ENSG00000185291	IL3RA	CD123|IL-3R-alpha|IL3R|IL3RAY|IL3RX|IL3RY|hIL-3Ra	interleukin 3 receptor subunit alpha	protein-coding
59324	chr13	24380121	24380380	+	0	NA	Intergenic	L1MB8|LINE|L1	48800	NR_131903	100861547		NR_131903	ENSG00000261498	LINC00566	-	long intergenic non-protein coding RNA 566	ncRNA
170339	chr3	184492351	184492650	+	0	NA	Intergenic	Intergenic	64418	NR_046593	100874079		NR_046593	ENSG00000230215	LINC01840	EIF2B5-AS1	long intergenic non-protein coding RNA 1840	ncRNA
176794	chr4	102517621	102518050	+	0	NA	intron (NM_001382625, intron 2 of 24)	intron (NM_001382625, intron 2 of 24)	-15349	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
227863	chr9	93598321	93599300	+	0	NA	intron (NM_005392, intron 1 of 21)	intron (NM_005392, intron 1 of 21)	3969	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
208934	chr7	74091971	74092330	+	0	NA	intron (NM_002314, intron 2 of 15)	AluSq|SINE|Alu	-1067	NM_001204426	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
233687	chrX	1176621	1177220	+	0	NA	Intergenic	AluSx|SINE|Alu	35729	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
103689	chr17	78808221	78808800	+	0	NA	intron (NR_169585, intron 13 of 19)	AluJr|SINE|Alu	-26168	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
131933	chr2	99085371	99085600	+	0	NA	intron (NM_025244, intron 10 of 20)	AluJb|SINE|Alu	55695	NR_146001	80705		NM_025244	ENSG00000135951	TSGA10	CEP4L|CT79|SPGF26	testis specific 10	protein-coding
16467	chr1	154610871	154611230	+	0	NA	intron (NM_001365046, intron 1 of 15)	intron (NM_001365046, intron 1 of 15)	-2253	NM_001365048	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
28821	chr10	62305921	62306200	+	0	NA	Intergenic	Intergenic	-37216	NM_145307	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
209224	chr7	75617451	75618480	+	0	NA	intron (NM_001243198, intron 1 of 28)	intron (NM_001243198, intron 1 of 28)	-6149	NM_001382445	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
226927	chr9	79592451	79592550	+	0	NA	intron (NM_001351556, intron 4 of 18)	AluJb|SINE|Alu	19323	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
30199	chr10	74738021	74738280	+	0	NA	Intergenic	Intergenic	-87105	NM_001370139	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
28128	chr10	43422051	43422350	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4760	NR_145740	109616985		NR_145740	ENSG00000221400	SNORD3J	-	small nucleolar RNA, C/D box 3J	snoRNA
80472	chr16	2699751	2700050	+	0	NA	exon (NM_018992, exon 4 of 6)	exon (NM_018992, exon 4 of 6)	17377	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
212632	chr7	129377371	129377560	+	0	NA	intron (NM_001130722, intron 1 of 16)	intron (NM_001130722, intron 1 of 16)	1627	NM_001130722	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
213061	chr7	131069901	131070500	+	0	NA	intron (NR_109852, intron 2 of 5)	HAL1|LINE|L1	36830	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
103560	chr17	78674321	78675000	+	0	NA	3' UTR (NM_001365037, exon 14 of 14)	3' UTR (NM_001365037, exon 14 of 14)	42372	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
155178	chr22	37748871	37749230	+	0	NA	intron (NM_138632, intron 1 of 7)	intron (NM_138632, intron 1 of 7)	2816	NM_138632	11078		NM_007032	ENSG00000100106	TRIOBP	DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
142245	chr20	3150851	3151150	+	0	NA	TTS (NR_038395)	TTS (NR_038395)	8865	NM_014948	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
140027	chr2	231056461	231057650	+	0	NA	intron (NM_002807, intron 1 of 24)	CpG	188	NM_002807	5707		NM_002807	ENSG00000173692	PSMD1	P112|Rpn2|S1	proteasome 26S subunit, non-ATPase 1	protein-coding
34715	chr10	133528921	133529380	+	0	NA	intron (NM_000773, intron 2 of 8)	intron (NM_000773, intron 2 of 8)	1787	NM_000773	1571		NM_000773	ENSG00000130649	CYP2E1	CPE1|CYP2E|P450-J|P450C2E	cytochrome P450 family 2 subfamily E member 1	protein-coding
217755	chr8	30918921	30919230	+	0	NA	Intergenic	Intergenic	-6067	NM_001350162	56154		NM_001350162	ENSG00000133863	TEX15	CT42|SPGF25	testis expressed 15, meiosis and synapsis associated	protein-coding
174496	chr4	39950651	39951050	+	0	NA	intron (NM_001100399, intron 2 of 32)	AluSx|SINE|Alu	27061	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
189157	chr5	171389921	171390350	+	0	NA	intron (NM_002520, intron 2 of 10)	intron (NM_002520, intron 2 of 10)	2286	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
76248	chr15	73994071	73996100	+	0	NA	promoter-TSS (NM_001324227)	promoter-TSS (NM_001324227)	369	NM_033244	5371		NM_002675	ENSG00000140464	PML	MYL|PP8675|RNF71|TRIM19	PML nuclear body scaffold	protein-coding
138232	chr2	202774251	202774350	+	0	NA	3' UTR (NM_001288623, exon 13 of 13)	3' UTR (NM_001288623, exon 13 of 13)	54934	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
216145	chr8	11497471	11498130	+	0	NA	intron (NM_001330465, intron 1 of 11).2	intron (NM_001330465, intron 1 of 11).2	3413	NM_001330465	640		NM_001715	ENSG00000136573	BLK	MODY11	BLK proto-oncogene, Src family tyrosine kinase	protein-coding
34674	chr10	133354771	133355130	+	0	NA	TTS (NM_001098483)	TTS (NM_001098483)	3069	NM_001301827	282969		NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
139922	chr2	230771871	230772030	+	0	NA	intron (NM_016289, intron 2 of 8)	L1ME1|LINE|L1	58402	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
11892	chr1	93177321	93177800	+	0	NA	intron (NR_030761, intron 1 of 4)	AluSz|SINE|Alu	2853	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
118828	chr19	38566721	38567000	+	0	NA	intron (NM_000540, intron 91 of 105)	intron (NM_000540, intron 91 of 105)	-29487	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
173155	chr4	6682401	6682600	+	0	NA	Intergenic	AluSx|SINE|Alu	8019	NR_147207	339988		NR_147207	ENSG00000246526	LINC02481	LINC002481	long intergenic non-protein coding RNA 2481	ncRNA
26707	chr10	22655001	22656780	+	0	NA	intron (NM_005028, intron 1 of 9)	(TGTGT)n|Simple_repeat|Simple_repeat	58218	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
36616	chr11	6925971	6926780	+	0	NA	promoter-TSS (NM_001354858)	promoter-TSS (NM_001354858)	-51	NM_013250	7762		NM_013250	ENSG00000149054	ZNF215	BAZ-2|BAZ2|ZKSCAN11|ZSCAN43	zinc finger protein 215	protein-coding
83341	chr16	25014471	25016180	+	0	NA	promoter-TSS (NM_001006634)	promoter-TSS (NM_001006634)	44	NM_001006634	55114		NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
167810	chr3	133580221	133580480	+	0	NA	intron (NM_001282764, intron 2 of 4)	L1PA6|LINE|L1	5916	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
11923	chr1	93591621	93592280	+	0	NA	promoter-TSS (NR_034091)	promoter-TSS (NR_034091)	-18	NR_034091	100129046		NR_034091		BCAR3-AS1	TP53LC19	BCAR3 antisense RNA 1	ncRNA
80734	chr16	3131371	3132230	+	0	NA	intron (NR_110900, intron 3 of 5)	LTR41C|LTR|ERVL	3082	NR_110900	100507458		NR_110900		ZNF213-AS1	-	ZNF213 antisense RNA 1 (head to head)	ncRNA
199342	chr6	114007571	114007930	+	0	NA	intron (NR_125845, intron 4 of 9)	intron (NR_125845, intron 4 of 9)	-36602	NR_033441	3066		NM_001527	ENSG00000196591	HDAC2	HD2|KDAC2|RPD3|YAF1	histone deacetylase 2	protein-coding
99000	chr17	48750901	48751550	+	0	NA	Intergenic	Intergenic	-22475	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
168384	chr3	141933701	141934100	+	0	NA	Intergenic	Intergenic	57257	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
152277	chr22	20295421	20295900	+	0	NA	Intergenic	L1M4c|LINE|L1	24400	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
77623	chr15	85406901	85407100	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	26397	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
109276	chr19	542671	542830	+	0	NA	TTS (NM_004359)	TTS (NM_004359)	-1303	NM_005317	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
98544	chr17	47670271	47670430	+	0	NA	intron (NM_002265, intron 11 of 21)	intron (NM_002265, intron 11 of 21)	19285	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
171783	chr4	241721	242480	+	0	NA	intron (NR_027481, intron 1 of 1)	LTR5B|LTR|ERVK	29500	NR_027481	642280		NM_001039758	ENSG00000290382	ZNF876P	-	zinc finger protein 876, pseudogene	pseudo
191237	chr6	5835201	5835400	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-140028	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
154573	chr22	36264121	36264380	+	0	NA	intron (NM_145343, intron 6 of 6)	MER77B|LTR|ERVL	11117	NM_003661	8542		NM_003661	ENSG00000100342	APOL1	APO-L|APOL|APOL-I|FSGS4	apolipoprotein L1	protein-coding
14186	chr1	121547371	121547530	+	0	NA	intron (NR_003955, intron 1 of 7)	intron (NR_003955, intron 1 of 7)	28338	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
161314	chr3	39408171	39408330	+	0	NA	promoter-TSS (NR_002325)	promoter-TSS (NR_002325)	-141	NR_002325	574040		NR_002325	ENSG00000206760	SNORA6	ACA6	small nucleolar RNA, H/ACA box 6	snoRNA
18720	chr1	167460101	167460300	+	0	NA	intron (NM_198053, intron 1 of 7)	AluJb|SINE|Alu	58329	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
121130	chr19	46025771	46026000	+	0	NA	Intergenic	L1M5|LINE|L1	-2832	NM_005091	8993		NM_005091	ENSG00000008438	PGLYRP1	PGLYRP|PGRP|PGRP-S|PGRPS|TAG7|TNFSF3L	peptidoglycan recognition protein 1	protein-coding
141968	chr20	1324501	1326380	+	0	NA	promoter-TSS (NR_040047)	promoter-TSS (NR_040047)	97	NR_040048	100507495		NR_040047	ENSG00000234684	SDCBP2-AS1	-	SDCBP2 antisense RNA 1	ncRNA
30397	chr10	78304421	78306130	+	0	NA	Intergenic	Intergenic	37933	NR_073447	414243		NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
51407	chr12	52003551	52003850	+	0	NA	Intergenic	Intergenic	-3246	NM_181711	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
221636	chr8	125921971	125922330	+	0	NA	TTS (NR_038447)	TTS (NR_038447)	29047	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
60849	chr13	45475151	45475730	+	0	NA	intron (NM_031431, intron 1 of 22)	AluJb|SINE|Alu	10501	NM_031431	83548		NM_031431	ENSG00000136152	COG3	CDG2BB|SEC34	component of oligomeric golgi complex 3	protein-coding
79746	chr16	1344901	1345100	+	0	NA	exon (NM_003933, exon 21 of 34)	exon (NM_003933, exon 21 of 34)	6878	NM_001001410	115939		NM_001001410	ENSG00000007520	TSR3	C16orf42|HsTsr3	TSR3 ribosome maturation factor	protein-coding
178713	chr4	152697951	152698130	+	0	NA	Intergenic	Intergenic	-18043	NM_152680	201799		NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding
212555	chr7	128868371	128868680	+	0	NA	intron (NM_001195150, intron 1 of 1)	intron (NM_001195150, intron 1 of 1)	2195	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
113103	chr19	8285521	8285850	+	0	NA	Intergenic	AluSq2|SINE|Alu	22673	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
220533	chr8	100690121	100691100	+	0	NA	Intergenic	L1ME3|LINE|L1	12414	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
74353	chr15	58628471	58629080	+	0	NA	intron (NM_001320570, intron 8 of 14)	intron (NM_001320570, intron 8 of 14)	64832	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
98052	chr17	45443401	45444580	+	0	NA	intron (NM_014798, intron 9 of 11).3	intron (NM_014798, intron 9 of 11).3	-11120	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
2520	chr1	9708421	9708680	+	0	NA	intron (NM_001350234, intron 2 of 23)	L1ME3Cz|LINE|L1	17083	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
171684	chr3	197748771	197750200	+	0	NA	promoter-TSS (NM_032288)	promoter-TSS (NM_032288)	-68	NM_001011537	84248		NM_032288	ENSG00000122068	FYTTD1	UIF	forty-two-three domain containing 1	protein-coding
52953	chr12	57461221	57462100	+	0	NA	intron (NM_001160045, intron 1 of 9)	intron (NM_001160045, intron 1 of 9)	1509	NM_001167609	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
17245	chr1	156342571	156342800	+	0	NA	intron (NR_130913, intron 2 of 2)	L2b|LINE|L2	3783	NM_001304820	128229		NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding
169920	chr3	177944101	177944750	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	127560	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
23521	chr1	229057771	229058730	+	0	NA	Intergenic	Intergenic	116551	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
62105	chr13	95176471	95177030	+	0	NA	intron (NM_001301830, intron 12 of 19)	intron (NM_001301830, intron 12 of 19)	-33594	NR_145733	109616987		NR_145733		SNORD13G	-	small nucleolar RNA, C/D box 13G	snoRNA
197887	chr6	89281751	89282100	+	0	NA	intron (NM_002043, intron 2 of 8)	LTR81|LTR|Gypsy	33374	NM_002043	2570		NM_002043	ENSG00000111886	GABRR2	-	gamma-aminobutyric acid type A receptor subunit rho2	protein-coding
174004	chr4	26355251	26355550	+	0	NA	intron (NM_001374403, intron 1 of 11)	AluJo|SINE|Alu	12260	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
168230	chr3	141310951	141312450	+	0	NA	Intergenic	CpG	-12486	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
159353	chr3	13236271	13236630	+	0	NA	intron (NM_001376938, intron 1 of 15)	intron (NM_001376938, intron 1 of 15)	46807	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
174331	chr4	38674501	38675000	+	0	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-10122	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
140276	chr2	232324721	232325180	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-53801	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
238802	chrX	154393871	154394230	+	0	NA	Intergenic	AluSz|SINE|Alu	-4015	NM_001303625	6134		NM_006013	ENSG00000147403	RPL10	AUTSX5|DXS648|DXS648E|L10|MRXS35|NOV|QM|uL16	ribosomal protein L10	protein-coding
61133	chr13	48571121	48571650	+	0	NA	Intergenic	Intergenic	9516	NR_051983	100129597		NR_051983	ENSG00000233610	LINC00462	-	long intergenic non-protein coding RNA 462	ncRNA
175890	chr4	80071701	80072700	+	0	NA	intron (NM_001286780, intron 1 of 16)	intron (NM_001286780, intron 1 of 16)	1029	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
39809	chr11	61975251	61975550	+	0	NA	Intergenic	Intergenic	-7766	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
204429	chr7	3116851	3117350	+	0	NA	Intergenic	MamRep564|Unknown|Unknown	41473	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
162361	chr3	47846621	47846880	+	0	NA	exon (NM_138615, exon 11 of 22)	exon (NM_138615, exon 11 of 22)	-2805	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
134427	chr2	143126251	143127200	+	0	NA	Intergenic	MIR|SINE|MIR	-2694	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
143949	chr20	32794051	32794600	+	0	NA	intron (NM_006892, intron 10 of 22)	AluJb|SINE|Alu	14473	NM_175850	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
44478	chr11	105037601	105037800	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-2543	NM_033295	834		NM_001223	ENSG00000137752	CASP1	ICE|IL1BC|P45	caspase 1	protein-coding
62498	chr13	99425001	99425200	+	0	NA	Intergenic	AluJb|SINE|Alu	68969	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
76951	chr15	78105021	78105480	+	0	NA	non-coding (NR_125435, exon 5 of 5)	non-coding (NR_125435, exon 5 of 5)	12665	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
42915	chr11	73388621	73389250	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	12267	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
178614	chr4	152097701	152098230	+	0	NA	Intergenic	Intergenic	-2788	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
155062	chr22	37530071	37530230	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-10735	NM_014550	29775		NM_014550	ENSG00000100065	CARD10	BIMP1|CARMA3|IMD89	caspase recruitment domain family member 10	protein-coding
90567	chr17	1518201	1518780	+	0	NA	TTS (NR_028514)	TTS (NR_028514)	1571	NR_028514	100306951		NR_028514	ENSG00000236618	PITPNA-AS1	-	PITPNA antisense RNA 1	ncRNA
125401	chr2	11618071	11618500	+	0	NA	intron (NM_014668, intron 21 of 32)	intron (NM_014668, intron 21 of 32)	51910	NM_012344	23620		NM_012344	ENSG00000169006	NTSR2	NTR2	neurotensin receptor 2	protein-coding
115454	chr19	15340301	15340900	+	0	NA	Intergenic	AluSx|SINE|Alu	-8061	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
57618	chr12	122496651	122497180	+	0	NA	intron (NM_001350936, intron 1 of 12)	AluSc8|SINE|Alu	4017	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
28056	chr10	43265551	43266300	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	1140	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
185232	chr5	122849151	122849930	+	0	NA	intron (NR_146145, intron 1 of 7)	intron (NR_146145, intron 1 of 7)	3927	NM_014035	28966		NM_014035	ENSG00000064652	SNX24	PRO1284|SBBI31	sorting nexin 24	protein-coding
74634	chr15	60797521	60797980	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	116181	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
97211	chr17	42760471	42761880	+	0	NA	promoter-TSS (NR_024461)	promoter-TSS (NR_024461)	-52	NM_005854	10266		NM_005854	ENSG00000131477	RAMP2	-	receptor activity modifying protein 2	protein-coding
205325	chr7	12481771	12482130	+	0	NA	Intergenic	Intergenic	-14479	NR_136261	102725191		NM_001386512	ENSG00000226690	C7orf78	-	chromosome 7 open reading frame 78	protein-coding
222161	chr8	132772721	132773580	+	0	NA	intron (NM_001382397, intron 1 of 10)	MER20B|DNA|hAT-Charlie	-2208	NM_001362971	51105		NM_016018	ENSG00000129292	PHF20L1	CGI-72|TDRD20B|URLC1	PHD finger protein 20 like 1	protein-coding
208162	chr7	64636451	64636650	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-29533	NM_001282360	51427		NM_016220	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
187026	chr5	139789121	139789750	+	0	NA	Intergenic	Intergenic	-6373	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
78190	chr15	90563751	90564850	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	34377	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
37312	chr11	14764901	14765850	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	121571	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
159059	chr3	11644801	11645150	+	0	NA	intron (NM_014667, intron 2 of 5)	intron (NM_014667, intron 2 of 5)	-1060	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
184674	chr5	108148751	108148850	+	0	NA	intron (NM_001163315, intron 6 of 8)	intron (NM_001163315, intron 6 of 8)	233298	NM_001163315	64839		NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
141640	chr2	241723021	241723280	+	0	NA	intron (NM_032329, intron 6 of 7)	intron (NM_032329, intron 6 of 7)	-11480	NM_001287249	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
29187	chr10	68960151	68960750	+	0	NA	intron (NM_004728, intron 2 of 14)	intron (NM_004728, intron 2 of 14)	4010	NM_001256910	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
232056	chr9	133469101	133469650	+	0	NA	3' UTR (NM_001242369, exon 6 of 6)	3' UTR (NM_001242369, exon 6 of 6)	9397	NM_017586	11094		NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
25076	chr10	3850671	3850930	+	0	NA	Intergenic	Intergenic	16850	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
223458	chr8	143993601	143994000	+	0	NA	TTS (NM_001009184)	TTS (NM_001009184)	3742	NM_000837	2907		NM_000837	ENSG00000178719	GRINA	HNRGW|LFG1|NMDARA1|TMBIM3	glutamate ionotropic receptor NMDA type subunit associated protein 1	protein-coding
24049	chr1	235295701	235296150	+	0	NA	intron (NM_016374, intron 2 of 23)	A-rich|Low_complexity|Low_complexity	-31291	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
191010	chr6	3076621	3076880	+	0	NA	intron (NM_001317061, intron 2 of 12)	intron (NM_001317061, intron 2 of 12)	8256	NM_001354930	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
43143	chr11	75300821	75301280	+	0	NA	intron (NM_020251, intron 1 of 14)	AluSc|SINE|Alu	34136	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
42727	chr11	72691701	72692100	+	0	NA	intron (NR_161388, intron 25 of 29)	MER1B|DNA|hAT-Charlie	-8574	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
78165	chr15	90477421	90477680	+	0	NA	intron (NM_003870, intron 25 of 37)	intron (NM_003870, intron 25 of 37)	-52373	NM_001042574	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
151641	chr22	16602151	16602730	+	0	NA	intron (NR_001591, intron 1 of 8)	CpG	529	NR_001591	387590		NR_001591	ENSG00000290418	TPTEP1	psiTPTE22	TPTE pseudogene 1	pseudo
23670	chr1	231335651	231336280	+	0	NA	exon (NM_175876, exon 1 of 1)	exon (NM_175876, exon 1 of 1)	1887	NM_175876	149371		NM_175876	ENSG00000116903	EXOC8	EXO84|Exo84p|NEDMISB|SEC84	exocyst complex component 8	protein-coding
37588	chr11	19345151	19345680	+	0	NA	intron (NM_001111018, intron 1 of 38)	CpG	179	NM_001111018	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
198080	chr6	90263651	90264030	+	0	NA	intron (NM_021813, intron 2 of 8)	intron (NM_021813, intron 2 of 8)	33003	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
219877	chr8	85451601	85451850	+	0	NA	intron (NR_121630, intron 2 of 2)	intron (NR_121630, intron 2 of 2)	11329	NR_121633	100996348		NR_121630		CA3-AS1	-	CA3 antisense RNA 1	ncRNA
186350	chr5	134835571	134835750	+	0	NA	Intergenic	AluSz|SINE|Alu	-10020	NM_152409	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
178136	chr4	142268221	142268880	+	0	NA	intron (NM_001385452, intron 5 of 21)	L1MA7|LINE|L1	37282	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
25283	chr10	6148121	6148700	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	2162	NM_001282630	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
197506	chr6	75621871	75622430	+	0	NA	intron (NM_015571, intron 2 of 23)	intron (NM_015571, intron 2 of 23)	20270	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
144241	chr20	34477101	34477300	+	0	NA	intron (NM_031483, intron 16 of 24)	intron (NM_031483, intron 16 of 24)	10875	NR_030374	693229		NR_030374	ENSG00000207997	MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	ncRNA
1846	chr1	6293801	6294400	+	0	NA	intron (NM_007274, intron 7 of 8)	intron (NM_007274, intron 7 of 8)	-33002	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
106746	chr18	23563371	23564200	+	0	NA	intron (NM_000271, intron 4 of 24)	L1MB8|LINE|L1	22721	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
56586	chr12	117854451	117854630	+	0	NA	intron (NM_173598, intron 3 of 19)	MamGypLTR3a|LTR|Gypsy	114450	NM_173598	283455		NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
184773	chr5	110726101	110727130	+	0	NA	promoter-TSS (NM_001039763)	promoter-TSS (NM_001039763)	56	NM_001039763	642987		NM_001039763	ENSG00000186952	TMEM232	-	transmembrane protein 232	protein-coding
164607	chr3	66301951	66302890	+	0	NA	intron (NM_173471, intron 6 of 10)	MER102c|DNA|hAT-Charlie	81417	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
176288	chr4	87209671	87210030	+	0	NA	intron (NM_020803, intron 1 of 9)	AluJo|SINE|Alu	10418	NM_001292003	57563		NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
207650	chr7	45076321	45076880	+	0	NA	TTS (NM_001167935)	TTS (NM_001167935)	12369	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
20949	chr1	202274521	202274830	+	0	NA	intron (NM_001017404, intron 4 of 15)	MER5A1|DNA|hAT-Charlie	60520	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
183486	chr5	79268271	79268680	+	0	NA	intron (NM_152405, intron 1 of 10)	AluSc|SINE|Alu	32344	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
228184	chr9	97586501	97586730	+	0	NA	intron (NM_001166116, intron 8 of 9)	L1PA2|LINE|L1	46753	NM_139246	158427		NM_139246	ENSG00000136925	TSTD2	C9orf97	thiosulfate sulfurtransferase like domain containing 2	protein-coding
95072	chr17	32887471	32887650	+	0	NA	Intergenic	L1PA2|LINE|L1	-10436	NM_001303280	4642		NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding
13538	chr1	115071371	115072130	+	0	NA	intron (NM_001308315, intron 2 of 6)	MLT1L|LTR|ERVL-MaLR	17750	NM_001308315	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
107156	chr18	35271151	35271250	+	0	NA	intron (NM_001166012, intron 1 of 4)	LTR12C|LTR|ERV1	19029	NM_001112734	100101467		NM_001112734	ENSG00000186814	ZSCAN30	ZNF-WYM|ZNF397OS|ZNF917	zinc finger and SCAN domain containing 30	protein-coding
49422	chr12	22693171	22693330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	68079	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
161087	chr3	38135501	38136480	+	0	NA	intron (NR_024024, intron 2 of 9)	LTR5B|LTR|ERVK	1137	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
120667	chr19	45095471	45095630	+	0	NA	intron (NM_019121, intron 1 of 12)	AluJb|SINE|Alu	2371	NM_019121	284352		NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding
13769	chr1	117067801	117068650	+	0	NA	intron (NM_003594, intron 3 of 22)	intron (NM_003594, intron 3 of 22)	7899	NM_003594	8458		NM_003594	ENSG00000116830	TTF2	F2|HuF2|ZGRF6	transcription termination factor 2	protein-coding
139450	chr2	223851601	223851900	+	0	NA	Intergenic	AluSx3|SINE|Alu	-14168	NR_110905	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
141996	chr20	1437221	1437680	+	0	NA	Intergenic	Intergenic	30242	NM_018839	55968		NM_016143	ENSG00000088833	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 cofactor	protein-coding
198201	chr6	96947021	96947330	+	0	NA	intron (NM_001323252, intron 2 of 11)	MER57E1|LTR|ERV1	22447	NM_001323259	114792		NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
207900	chr7	50447871	50448230	+	0	NA	5' UTR (NM_001346563, exon 4 of 5)	5' UTR (NM_001346563, exon 4 of 5)	2300	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
168017	chr3	136881201	136881400	+	0	NA	intron (NM_001291999, intron 1 of 3)	AluSx4|SINE|Alu	19092	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
164957	chr3	71264871	71265430	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-20073	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
59094	chr13	21136501	21136900	+	0	NA	Intergenic	L1ME3D|LINE|L1	-3814	NM_005870	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
143588	chr20	31681951	31683030	+	0	NA	intron (NR_134257, intron 1 of 2)	AluJb|SINE|Alu	-39017	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
210559	chr7	100342571	100342930	+	0	NA	intron (NR_036570, intron 3 of 16)	MLT1G3|LTR|ERVL-MaLR	-6443	NR_003613	5379		NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
199193	chr6	111777301	111779100	+	0	NA	intron (NM_002037, intron 3 of 13)	L3|LINE|CR1	-18283	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
104444	chr17	81088551	81090080	+	0	NA	intron (NM_001385147, intron 5 of 12)	intron (NM_001385147, intron 5 of 12)	5776	NM_001385156	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
63263	chr13	113953271	113953430	+	0	NA	TTS (NM_001365455)	TTS (NM_001365455)	20726	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
221114	chr8	118101371	118101530	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	10376	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
154240	chr22	31593671	31594100	+	0	NA	intron (NM_001007467, intron 15 of 32)	SVA_F|Retroposon|SVA	27646	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
84825	chr16	31103771	31104130	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-4436	NM_005881	10295		NM_005881	ENSG00000103507	BCKDK	BCKDKD|BDK	branched chain keto acid dehydrogenase kinase	protein-coding
116482	chr19	18108201	18108480	+	0	NA	intron (NM_015016, intron 2 of 26)	intron (NM_015016, intron 2 of 26)	-9524	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
73067	chr15	40911121	40911380	+	0	NA	Intergenic	Intergenic	4441	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
137662	chr2	197433721	197434000	+	0	NA	intron (NM_001005526, intron 1 of 4)	intron (NM_001005526, intron 1 of 4)	1168	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
175642	chr4	76407701	76407930	+	0	NA	promoter-TSS (NM_001042784)	promoter-TSS (NM_001042784)	-510	NM_001042784	339965		NM_178555	ENSG00000163749	CCDC158	-	coiled-coil domain containing 158	protein-coding
79558	chr16	974171	974930	+	0	NA	intron (NM_001352017, intron 1 of 11)	intron (NM_001352017, intron 1 of 11)	-3551	NM_001352020	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
70647	chr14	102927621	102929200	+	0	NA	intron (NM_030943, intron 3 of 11)	CpG	5747	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
179436	chr4	184382321	184382800	+	0	NA	promoter-TSS (NR_125933)	promoter-TSS (NR_125933)	-254	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
149554	chr21	33202101	33202300	+	0	NA	Intergenic	Intergenic	-27695	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
101756	chr17	72589221	72589880	+	0	NA	intron (NR_036488, intron 1 of 3)	L1MC4a|LINE|L1	3254	NR_036488	100499467		NR_036488	ENSG00000227036	LINC00673	ERRLR01|HI-LNC75|HILNC75|LUCAIR1|RASON|SLNCR|SLNCR1	long intergenic non-protein coding RNA 673	ncRNA
226469	chr9	71740371	71740530	+	0	NA	intron (NM_001135820, intron 4 of 22)	intron (NM_001135820, intron 4 of 22)	28063	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
81732	chr16	11312671	11313250	+	0	NA	Intergenic	Intergenic	-6433	NR_031678	100313773		NR_031678	ENSG00000221801	MIR548H2	MIR548H-2|MIRN548H2	microRNA 548h-2	ncRNA
220281	chr8	97847121	97847430	+	0	NA	intron (NM_018407, intron 6 of 6)	intron (NM_018407, intron 6 of 6)	-21789	NM_002380	4147		NM_002380	ENSG00000132561	MATN2	-	matrilin 2	protein-coding
6596	chr1	28766801	28767180	+	0	NA	intron (NM_016258, intron 4 of 4)	AluJr|SINE|Alu	30050	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
153522	chr22	26553021	26553500	+	0	NA	intron (NM_001362923, intron 1 of 7)	intron (NM_001362923, intron 1 of 7)	2063	NR_031615	100313914		NR_031615	ENSG00000221760	MIR548J	MIRN548J|hsa-mir-548j	microRNA 548j	ncRNA
76576	chr15	75326271	75326630	+	0	NA	Intergenic	Intergenic	-9613	NM_017828	54939		NM_017828	ENSG00000140365	COMMD4	-	COMM domain containing 4	protein-coding
10894	chr1	78676371	78676600	+	0	NA	Intergenic	Intergenic	26654	NM_006417	10561		NM_006417	ENSG00000137965	IFI44	MTAP44|TLDC5|p44	interferon induced protein 44	protein-coding
46877	chr11	133958621	133958880	+	0	NA	Intergenic	Intergenic	-1782	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
86009	chr16	57475801	57477450	+	0	NA	intron (NM_001330556, intron 1 of 6)	intron (NM_001330556, intron 1 of 6)	3132	NM_001369621	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
108848	chr18	79200571	79201200	+	0	NA	intron (NM_198531, intron 9 of 29)	intron (NM_198531, intron 9 of 29)	131491	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
204355	chr7	2902951	2904480	+	0	NA	Intergenic	Intergenic	-59407	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
130855	chr2	87348551	87349280	+	0	NA	Intergenic	TAR1|Satellite|telo	-106512	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
61355	chr13	50957721	50957980	+	0	NA	intron (NM_001142279, intron 9 of 9)	L1PA16|LINE|L1	-47138	NR_046552	100874255		NR_046552		RNASEH2B-AS1	-	RNASEH2B antisense RNA 1	ncRNA
1443	chr1	2640701	2641680	+	0	NA	TTS (NM_001242672).2	TTS (NM_001242672).2	-8174	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
190104	chr5	177890751	177891050	+	0	NA	Intergenic	Intergenic	15639	NR_003615	728554		NR_003615	ENSG00000291113	LOC728554	-	THO complex 3 pseudogene	pseudo
227714	chr9	93038271	93039700	+	0	NA	Intergenic	Intergenic	-19703	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
91785	chr17	7012001	7013000	+	0	NA	promoter-TSS (NR_040089)	promoter-TSS (NR_040089)	83	NR_037717	100529209		NR_037717	ENSG00000161939	RNASEK-C17orf49	BAP18|C17orf49	RNASEK-C17orf49 readthrough	ncRNA
66587	chr14	63510421	63511800	+	0	NA	intron (NM_006246, intron 2 of 13)	MLT1H|LTR|ERVL-MaLR	-2872	NM_001282182	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
63803	chr14	21383311	21384930	+	0	NA	promoter-TSS (NM_007192)	promoter-TSS (NM_007192)	-101	NM_007192	11198		NM_007192	ENSG00000092201	SUPT16H	CDC68|FACTP140|NEDDFAC|SPT16|SPT16/CDC68	SPT16 homolog, facilitates chromatin remodeling subunit	protein-coding
209462	chr7	76485221	76485550	+	0	NA	intron (NM_001102595, intron 3 of 9)	intron (NM_001102595, intron 3 of 9)	4875	NM_001102596	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
162617	chr3	48709171	48709930	+	0	NA	intron (NM_016291, intron 1 of 5)	intron (NM_016291, intron 1 of 5)	7671	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
162789	chr3	49098401	49099030	+	0	NA	intron (NM_001272073, intron 19 of 23)	intron (NM_001272073, intron 19 of 23)	1199	NR_106950	102465536		NR_106950	ENSG00000284488	MIR6890	hsa-mir-6890	microRNA 6890	ncRNA
214449	chr7	150110421	150110830	+	0	NA	intron (NM_001351028, intron 6 of 9)	intron (NM_001351028, intron 6 of 9)	-62910	NR_147022	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
74135	chr15	55241601	55242000	+	0	NA	intron (NM_183234, intron 1 of 6)	AluJr4|SINE|Alu	28486	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
49525	chr12	25590201	25591000	+	0	NA	intron (NM_001352232, intron 1 of 10)	L1MA2|LINE|L1	-37317	NM_001145729	160492		NM_152590	ENSG00000152936	LMNTD1	IFLTD1|LMNARS1|PAS1C1	lamin tail domain containing 1	protein-coding
100554	chr17	62618701	62619100	+	0	NA	Intergenic	MIR3|SINE|MIR	-8770	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
203131	chr6	166907271	166907700	+	0	NA	Intergenic	Intergenic	3787	NR_046644	100861523		NR_046644		RPS6KA2-AS1	-	RPS6KA2 antisense RNA 1	ncRNA
220000	chr8	90000671	90002300	+	0	NA	promoter-TSS (NM_001359)	promoter-TSS (NM_001359)	8	NM_001359	1666		NM_001359	ENSG00000104325	DECR1	DECR|NADPH|SDR18C1	2,4-dienoyl-CoA reductase 1	protein-coding
198493	chr6	106335021	106336200	+	0	NA	Intergenic	AluSz6|SINE|Alu	-9790	NM_001286107	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
156901	chr22	42203621	42203880	+	0	NA	intron (NM_005650, intron 2 of 5)	intron (NM_005650, intron 2 of 5)	-59196	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
112256	chr19	5785871	5786530	+	0	NA	intron (NM_020175, intron 10 of 12)	AluSz|SINE|Alu	-1454	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
2398	chr1	9542051	9543250	+	0	NA	intron (NM_032315, intron 1 of 6)	intron (NM_032315, intron 1 of 6)	3185	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
138150	chr2	202366601	202367580	+	0	NA	Intergenic	AluY|SINE|Alu	-9237	NM_001204	659		NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding
187844	chr5	147216521	147216880	+	0	NA	intron (NR_147191, intron 1 of 2)	L1PA7|LINE|L1	18159	NR_147190	105378217		NR_147190		STK32A-AS1	-	STK32A antisense RNA 1	ncRNA
146650	chr20	50384651	50384950	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-63458	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
238656	chrX	154014751	154015300	+	0	NA	intron (NM_001025242, intron 10 of 13)	intron (NM_001025242, intron 10 of 13)	4877	NM_001025242	3654		NM_001569	ENSG00000184216	IRAK1	IRAK|pelle	interleukin 1 receptor associated kinase 1	protein-coding
192569	chr6	25652201	25652580	+	0	NA	5' UTR (NM_006998, exon 1 of 11)	5' UTR (NM_006998, exon 1 of 11)	175	NM_006998	10590		NM_006998	ENSG00000079689	SCGN	CALBL|DJ501N12.8|SECRET|SEGN|setagin	secretagogin, EF-hand calcium binding protein	protein-coding
172387	chr4	1765071	1765230	+	0	NA	Intergenic	Intergenic	-28143	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
234178	chrX	11768371	11768930	+	0	NA	TTS (NM_078628)	TTS (NM_078628)	9003	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
165927	chr3	107432671	107432830	+	0	NA	intron (NR_110039, intron 1 of 2)	MIR|SINE|MIR	1820	NR_110039	101929607		NR_110039	ENSG00000273125	LINC01990	-	long intergenic non-protein coding RNA 1990	ncRNA
156651	chr22	41633521	41633850	+	0	NA	intron (NM_001288977, intron 3 of 12)	Charlie4z|DNA|hAT-Charlie	12390	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
229484	chr9	122158151	122158530	+	0	NA	intron (NM_001318195, intron 1 of 3)	L2c|LINE|L2	1439	NM_014222	4702		NM_014222	ENSG00000119421	NDUFA8	CI-19KD|CI-PGIV|MC1DN37|PGIV	NADH:ubiquinone oxidoreductase subunit A8	protein-coding
97410	chr17	43395271	43395430	+	0	NA	Intergenic	L2b|LINE|L2	-3643	NM_001661	379		NM_001661	ENSG00000175906	ARL4D	ARF4L	ADP ribosylation factor like GTPase 4D	protein-coding
78664	chr15	94387701	94388150	+	0	NA	intron (NM_001385002, intron 15 of 23)	L2a|LINE|L2	31995	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
20819	chr1	201327221	201327300	+	0	NA	intron (NM_001005337, intron 12 of 13)	intron (NM_001005337, intron 12 of 13)	43754	NM_001005337	5317		NM_000299	ENSG00000081277	PKP1	B6P|EDSFS	plakophilin 1	protein-coding
209575	chr7	77427801	77428380	+	0	NA	Intergenic	Intergenic	-11741	NM_001350896	54103		NM_017439	ENSG00000186088	GSAP	PION	gamma-secretase activating protein	protein-coding
227613	chr9	92760021	92760480	+	0	NA	intron (NM_001003800, intron 1 of 6)	intron (NM_001003800, intron 1 of 6)	4583	NM_015250	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
85298	chr16	49281821	49282300	+	0	NA	promoter-TSS (NM_004352)	promoter-TSS (NM_004352)	-222	NM_004352	869		NM_004352	ENSG00000102924	CBLN1	-	cerebellin 1 precursor	protein-coding
181875	chr5	54440501	54440900	+	0	NA	Intergenic	Intergenic	-14999	NM_006308	8988		NM_006308	ENSG00000169271	HSPB3	DHMN2C|HMN2C|HMND4|HSPL27	heat shock protein family B (small) member 3	protein-coding
146900	chr20	51538171	51538880	+	0	NA	intron (NM_001258292, intron 1 of 9)	L1M5|LINE|L1	4194	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
179897	chr5	674771	675980	+	0	NA	intron (NM_007030, intron 2 of 3)	intron (NM_007030, intron 2 of 3)	17977	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
130961	chr2	87528821	87529480	+	0	NA	Intergenic	Intergenic	59200	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
210712	chr7	100589851	100590430	+	0	NA	intron (NR_038910, intron 8 of 8)	intron (NR_038910, intron 8 of 8)	527	NM_012172	26261		NM_012172	ENSG00000106336	FBXO24	FBX24	F-box protein 24	protein-coding
144374	chr20	35096001	35096900	+	0	NA	Intergenic	Intergenic	-3635	NM_199368	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
181340	chr5	40408551	40408730	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-271275	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
192680	chr6	26242501	26242700	+	0	NA	Intergenic	Intergenic	2207	NM_003540	8361		NM_003540	ENSG00000274618	H4C6	H4|H4-16|H4/c|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C8|H4C9|H4FC|HIST1H4F	H4 clustered histone 6	protein-coding
238906	chrX	154670871	154671050	+	0	NA	Intergenic	L1PA6|LINE|L1	-17381	NM_020994	30848		NM_020994	ENSG00000126890	CTAG2	CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B	cancer/testis antigen 2	protein-coding
62604	chr13	100471171	100471330	+	0	NA	intron (NR_047686, intron 3 of 4)	Tigger1|DNA|TcMar-Tigger	9765	NR_047686	100885777		NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
156378	chr22	41096271	41097200	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluSq|SINE|Alu	4143	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
160785	chr3	32950821	32951850	+	0	NA	promoter-TSS (NM_005508)	promoter-TSS (NM_005508)	-309	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
120311	chr19	43499521	43499780	+	0	NA	intron (NM_198850, intron 4 of 15)	L1MC5a|LINE|L1	5183	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
84747	chr16	30955551	30956000	+	0	NA	TTS (NM_152288)	TTS (NM_152288)	-1979	NM_014712	9739		NM_014712	ENSG00000099381	SETD1A	EPEDD|EPEO2|KMT2F|NEDSID|Set1|Set1A	SET domain containing 1A, histone lysine methyltransferase	protein-coding
60919	chr13	46185471	46185630	+	0	NA	Intergenic	Intergenic	-3373	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
215870	chr8	7613371	7613530	+	0	NA	Intergenic	Intergenic	-39052	NR_046343								
39269	chr11	57791751	57793000	+	0	NA	intron (NM_001331, intron 3 of 18)	intron (NM_001331, intron 3 of 18)	30573	NM_001331	1500		NM_001331	ENSG00000198561	CTNND1	BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
15509	chr1	150481871	150482030	+	0	NA	Intergenic	AluSx|SINE|Alu	-5469	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
11501	chr1	90842571	90842730	+	0	NA	intron (NR_147931, intron 1 of 2)	intron (NR_147931, intron 1 of 2)	-6489	NR_147932	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
4357	chr1	20666721	20667050	+	0	NA	intron (NM_020816, intron 13 of 14)	intron (NM_020816, intron 13 of 14)	-5516	NM_005216	1650		NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein-coding
190565	chr5	180809551	180811530	+	0	NA	promoter-TSS (NR_157153)	promoter-TSS (NR_157153)	-84	NM_001364384	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
215345	chr7	157373451	157374100	+	0	NA	intron (NM_001363676, intron 5 of 6)	intron (NM_001363676, intron 5 of 6)	36771	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
172014	chr4	967851	969380	+	0	NA	intron (NM_001347, intron 3 of 22)	intron (NM_001347, intron 3 of 22)	4954	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
174885	chr4	48781851	48782580	+	0	NA	Intergenic	CR1_Mam|LINE|CR1	-1936	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
40109	chr11	62812301	62812680	+	0	NA	intron (NM_001244666, intron 10 of 10)	AluY|SINE|Alu	-7050	NM_006362	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
9273	chr1	46339071	46339230	+	0	NA	Intergenic	L1M5|LINE|L1	-1027	NR_045789	387338		NM_199044	ENSG00000117481	NSUN4	SHTAP	NOP2/Sun RNA methyltransferase 4	protein-coding
33082	chr10	110896251	110896550	+	0	NA	intron (NM_145341, intron 12 of 12)	MIRc|SINE|MIR	-1690	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
6388	chr1	27892801	27893000	+	0	NA	intron (NM_001286076, intron 8 of 8)	intron (NM_001286076, intron 8 of 8)	20356	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
48081	chr12	7160021	7160480	+	0	NA	Intergenic	Intergenic	-28403	NM_001351124	5830		NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
135457	chr2	161246821	161247080	+	0	NA	non-coding (NR_110163, exon 3 of 3)	non-coding (NR_110163, exon 3 of 3)	2211	NR_110163	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
17032	chr1	156068321	156068980	+	0	NA	intron (NR_133653, intron 2 of 3)	intron (NR_133653, intron 2 of 3)	7490	NR_133653	57111		NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
205459	chr7	17233771	17235150	+	0	NA	Intergenic	Intergenic	-64192	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
195538	chr6	37381501	37381800	+	0	NA	intron (NR_046399, intron 7 of 7)	Tigger16a|DNA|TcMar-Tigger	27667	NR_046399	9025		NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
64019	chr14	22505621	22506300	+	0	NA	Intergenic	Intergenic	-23001	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
177183	chr4	108163251	108163730	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	3307	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
141892	chr20	836651	837150	+	0	NA	intron (NM_207121, intron 1 of 1)	L1MB3|LINE|L1	847	NM_207121	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
190472	chr5	180113171	180113330	+	0	NA	intron (NM_175062, intron 11 of 13)	CpG	-41491	NM_001280801	55819		NM_018434	ENSG00000113269	RNF130	G1RP|G1RZFP|GOLIATH|GP	ring finger protein 130	protein-coding
42845	chr11	73146951	73147050	+	0	NA	Intergenic	Intergenic	-4682	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
116726	chr19	18456671	18457500	+	0	NA	intron (NM_006532, intron 6 of 11)	intron (NM_006532, intron 6 of 11)	-18952	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
61406	chr13	51717251	51717350	+	0	NA	intron (NM_052950, intron 4 of 11)	intron (NM_052950, intron 4 of 11)	86435	NM_001377932	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
23903	chr1	234979801	234980000	+	0	NA	Intergenic	Intergenic	-15901	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
171061	chr3	195409671	195410030	+	0	NA	intron (NM_012287, intron 1 of 22)	AluSx1|SINE|Alu	33170	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
125293	chr2	10534921	10535380	+	0	NA	Intergenic	Intergenic	85422	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
114424	chr19	12673851	12674430	+	0	NA	intron (NR_029375, intron 10 of 10)	intron (NR_029375, intron 10 of 10)	4387	NM_032332	84292		NM_032332	ENSG00000123154	WDR83	MORG1	WD repeat domain 83	protein-coding
233635	chrX	584901	585500	+	0	NA	Intergenic	Intergenic	-39144	NM_006883	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
202857	chr6	159786951	159787680	+	0	NA	intron (NM_030752, intron 3 of 11)	intron (NM_030752, intron 3 of 11)	-1582	NR_002965	677812		NR_002965	ENSG00000206910	SNORA29	ACA29	small nucleolar RNA, H/ACA box 29	snoRNA
86663	chr16	67472151	67472450	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	8857	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
132859	chr2	111005451	111005750	+	0	NA	intron (NM_001371254, intron 15 of 18)	intron (NM_001371254, intron 15 of 18)	109988	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
189012	chr5	168577871	168578300	+	0	NA	intron (NM_024594, intron 1 of 6)	intron (NM_024594, intron 1 of 6)	1283	NM_024594	79646		NM_024594	ENSG00000120137	PANK3	-	pantothenate kinase 3	protein-coding
127730	chr2	43548221	43548650	+	0	NA	intron (NR_144316, intron 20 of 36)	L1PA3|LINE|L1	47539	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
2586	chr1	9828671	9828830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4224	NM_014944	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
183722	chr5	81009121	81009380	+	0	NA	intron (NM_006909, intron 1 of 26)	MIRb|SINE|MIR	-48343	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
194133	chr6	31971401	31973250	+	0	NA	promoter-TSS (NM_005510).5	promoter-TSS (NM_005510).5	-38	NM_004197	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
191285	chr6	6584621	6584880	+	0	NA	intron (NR_026970, intron 1 of 7)	intron (NR_026970, intron 1 of 7)	-3970	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
16784	chr1	155524421	155525330	+	0	NA	intron (NM_018489, intron 1 of 27)	intron (NM_018489, intron 1 of 27)	-37167	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
216774	chr8	22497171	22497330	+	0	NA	intron (NM_005605, intron 3 of 13)	AluSp|SINE|Alu	-54677	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
167948	chr3	136252771	136253230	+	0	NA	intron (NM_001178014, intron 1 of 15)	(T)n|Simple_repeat|Simple_repeat	2660	NM_000532	5096		NM_000532	ENSG00000114054	PCCB	-	propionyl-CoA carboxylase subunit beta	protein-coding
95593	chr17	37362671	37363250	+	0	NA	intron (NM_198839, intron 4 of 59)	AluY|SINE|Alu	-3844	NM_198836	31		NM_000664	ENSG00000278540	ACACA	ACAC|ACACAD|ACACalpha|ACC|ACC1|ACCA|ACCalpha|Acac1|hACC1	acetyl-CoA carboxylase alpha	protein-coding
4887	chr1	23790871	23792750	+	0	NA	intron (NM_007260, intron 1 of 9)	intron (NM_007260, intron 1 of 9)	665	NM_007260	11313		NM_007260	ENSG00000011009	LYPLA2	APT-2|APT2|DJ886K2.4	lysophospholipase 2	protein-coding
57538	chr12	122151501	122151700	+	0	NA	Intergenic	AluSp|SINE|Alu	-16119	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
170500	chr3	186180811	186181250	+	0	NA	intron (NM_001346, intron 22 of 24)	MamSINE1|SINE|tRNA-RTE	-71941	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
49899	chr12	39440401	39440980	+	0	NA	intron (NM_001378440, intron 1 of 36)	intron (NM_001378440, intron 1 of 36)	2430	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
20443	chr1	198521851	198522030	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	18740	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
213783	chr7	140724101	140724300	+	0	NA	3' UTR (NM_001378467, exon 19 of 19)	3' UTR (NM_001378467, exon 19 of 19)	-27123	NR_024454	100134713		NR_024454	ENSG00000240889	NDUFB2-AS1	-	NDUFB2 antisense RNA 1	ncRNA
93914	chr17	21285951	21286630	+	0	NA	intron (NM_145109, intron 1 of 11)	intron (NM_145109, intron 1 of 11)	1579	NM_001316332	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
122530	chr19	49629101	49629300	+	0	NA	Intergenic	AluSx|SINE|Alu	10943	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
57769	chr12	122987301	122988050	+	0	NA	intron (NM_001384662, intron 19 of 23)	intron (NM_001384662, intron 19 of 23)	7615	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
198215	chr6	98825571	98825730	+	0	NA	Intergenic	Intergenic	6050	NR_148381	105447646		NR_148381		PNKY	-	long intergenic non-protein coding RNA PNKY	ncRNA
218032	chr8	38773821	38774400	+	0	NA	intron (NM_001352804, intron 1 of 10)	intron (NM_001352804, intron 1 of 10)	-13126	NM_001352779	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
71854	chr15	22253721	22255100	+	0	NA	Intergenic	Intergenic	-4204	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
56292	chr12	112381401	112383300	+	0	NA	promoter-TSS (NM_001109662)	promoter-TSS (NM_001109662)	81	NM_001109662	283450		NM_173813	ENSG00000173064	HECTD4	C12ord51|C12orf51|HEEL|NEDSSCC|POTAGE	HECT domain E3 ubiquitin protein ligase 4	protein-coding
233552	chrX	269071	269530	+	0	NA	Intergenic	Intergenic	-7056	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228352	chr9	99035551	99035650	+	0	NA	intron (NM_001855, intron 19 of 41)	intron (NM_001855, intron 19 of 41)	-69513	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
202351	chr6	157597701	157597930	+	0	NA	intron (NM_024630, intron 3 of 8)	intron (NM_024630, intron 3 of 8)	68683	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
133261	chr2	113435671	113436230	+	0	NA	Intergenic	Intergenic	-1741	NM_001330340	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
6858	chr1	31063371	31064100	+	0	NA	intron (NM_014676, intron 1 of 21)	intron (NM_014676, intron 1 of 21)	1982	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
214476	chr7	150372251	150372550	+	0	NA	exon (NM_001099696, exon 2 of 2)	exon (NM_001099696, exon 2 of 2)	3578	NM_001362745	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
34175	chr10	128098721	128098980	+	0	NA	3' UTR (NM_002417, exon 15 of 15)	3' UTR (NM_002417, exon 15 of 15)	27573	NM_002417	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
211155	chr7	102571651	102573100	+	0	NA	intron (NM_001097615, intron 1 of 8)	intron (NM_001097615, intron 1 of 8)	246	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
143872	chr20	32559671	32559830	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	25583	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
88798	chr16	87385671	87386530	+	0	NA	intron (NM_001282683, intron 2 of 9)	intron (NM_001282683, intron 2 of 9)	-2324	NM_024735	79791		NM_024735	ENSG00000103264	FBXO31	FBX14|FBXO14|Fbx31|MRT45|pp2386	F-box protein 31	protein-coding
235240	chrX	41442071	41443530	+	0	NA	Intergenic	Intergenic	-4543	NM_001378477	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
32240	chr10	101835721	101836780	+	0	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	3621	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
236621	chrX	74536401	74537100	+	0	NA	Intergenic	CpG	77874	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
188457	chr5	154484651	154484950	+	0	NA	Intergenic	Intergenic	-6573	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
190	chr1	684501	685300	+	0	NA	TTS (NM_001005277).2	TTS (NM_001005277).2	1754	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
35363	chr11	1256121	1256980	+	0	NA	promoter-TSS (NR_106802)	promoter-TSS (NR_106802)	-55	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
72563	chr15	34513971	34515730	+	0	NA	Intergenic	CpG	13521	NR_036050	100302160		NR_036050	ENSG00000221649	MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
216673	chr8	22149471	22149830	+	0	NA	intron (NM_139278, intron 7 of 7)	intron (NM_139278, intron 7 of 7)	7156	NM_139278	203190		NM_139278	ENSG00000168481	LGI3	IDDMDS|LGIL4	leucine rich repeat LGI family member 3	protein-coding
40307	chr11	63881621	63881880	+	0	NA	intron (NM_004954, intron 1 of 16)	AluJo|SINE|Alu	-6787	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
120817	chr19	45483851	45483950	+	0	NA	Intergenic	AluSx|SINE|Alu	9353	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
223981	chr9	2028921	2029180	+	0	NA	exon (NM_001289397, exon 2 of 33)	exon (NM_001289397, exon 2 of 33)	7105	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
2167	chr1	8446051	8446350	+	0	NA	intron (NM_012102, intron 12 of 23)	L1P2|LINE|L1	21555	NR_125999	102724552		NR_125999		RERE-AS1	-	RERE antisense RNA 1	ncRNA
25438	chr10	6585001	6585200	+	0	NA	non-coding (NR_036502, exon 3 of 3)	non-coding (NR_036502, exon 3 of 3)	-4454	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
152844	chr22	22111021	22111550	+	0	NA	Intergenic	Intergenic	-67351	NR_135291	649179		NR_135291	ENSG00000290847	PRAMENP	PRAMEF24P|PRAMEL	PRAME N-terminal like, pseudogene	pseudo
36536	chr11	6542721	6543000	+	0	NA	intron (NM_144666, intron 18 of 42)	intron (NM_144666, intron 18 of 42)	45580	NM_173589	144132		NM_144666	ENSG00000179532	DNHD1	C11orf47|CCDC35|DHCD1|DNHD1L|SPGF65	dynein heavy chain domain 1	protein-coding
124319	chr19	58097551	58099030	+	0	NA	promoter-TSS (NM_001145544)	promoter-TSS (NM_001145544)	-59	NM_001145544	65982		NM_023926	ENSG00000121413	ZSCAN18	ZNF447	zinc finger and SCAN domain containing 18	protein-coding
63071	chr13	113161301	113163550	+	0	NA	intron (NM_001256134, intron 4 of 8)	intron (NM_001256134, intron 4 of 8)	3771	NM_001256134	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
127366	chr2	39243621	39244200	+	0	NA	promoter-TSS (NR_144521)	promoter-TSS (NR_144521)	73	NR_144521	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
197835	chr6	87968501	87968880	+	0	NA	Intergenic	Intergenic	-79151	NM_030960	81833		NM_030960	ENSG00000118434	SPACA1	SAMP32|SPGF85	sperm acrosome associated 1	protein-coding
37043	chr11	12195621	12196630	+	0	NA	intron (NR_144415, intron 2 of 26)	L2|LINE|L2	32442	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
119229	chr19	39466451	39467000	+	0	NA	exon (NM_001319991, exon 12 of 29)	exon (NM_001319991, exon 12 of 29)	-1497	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
56561	chr12	117064671	117064830	+	0	NA	intron (NR_031766, intron 2 of 7)	L2a|LINE|L2	34666	NR_031766	54997		NM_017899	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
118939	chr19	38789571	38789980	+	0	NA	intron (NM_001042507, intron 2 of 3)	intron (NM_001042507, intron 2 of 3)	575	NM_001042507	653499		NM_001042507	ENSG00000178934	LGALS7B	GAL7|Gal-7|HKL-14|LGALS7|PI7	galectin 7B	protein-coding
80575	chr16	2861171	2861530	+	0	NA	Intergenic	L2a|LINE|L2	-3180	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
213684	chr7	140083551	140083650	+	0	NA	Intergenic	MIRb|SINE|MIR	-20649	NR_130117	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
158626	chr3	4907621	4909380	+	0	NA	intron (NR_125916, intron 1 of 2)	intron (NR_125916, intron 1 of 2)	-1999	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
105020	chr17	82043851	82044180	+	0	NA	Intergenic	Intergenic	6097	NR_159948	113523640		NR_159947	ENSG00000264569	DCXR-DT	-	DCXR divergent transcript	ncRNA
183895	chr5	87373301	87373500	+	0	NA	intron (NM_022650, intron 13 of 24)	MER2|DNA|TcMar-Tigger	39504	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
53245	chr12	62525071	62525630	+	0	NA	intron (NM_001278472, intron 11 of 35)	intron (NM_001278472, intron 11 of 35)	58524	NM_015026	23041		NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
215521	chr7	158730321	158730580	+	0	NA	TTS (NM_001367773)	TTS (NM_001367773)	-25646	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
121252	chr19	46676951	46677350	+	0	NA	non-coding (NR_040042, exon 3 of 3)	non-coding (NR_040042, exon 3 of 3)	15672	NR_040041	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
197769	chr6	87484071	87484230	+	0	NA	intron (NM_006416, intron 2 of 7)	HERVIP10FH-int|LTR|ERV1	11176	NM_006416	10559		NM_006416	ENSG00000164414	SLC35A1	CDG2F|CMPST|CST|hCST	solute carrier family 35 member A1	protein-coding
194716	chr6	33770471	33770850	+	0	NA	TTS (NM_001143944)	TTS (NM_001143944)	16282	NM_001143944	221496		NM_181336	ENSG00000161904	LEMD2	CTRCT42|LEM2|MARUPS|NET25|dJ482C21.1	LEM domain nuclear envelope protein 2	protein-coding
221561	chr8	125093051	125093500	+	0	NA	intron (NM_001349485, intron 1 of 6)	MLT1A0|LTR|ERVL-MaLR	1415	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
97151	chr17	42568851	42569350	+	0	NA	intron (NM_170607, intron 4 of 7)	intron (NM_170607, intron 4 of 7)	2000	NM_198204	6945		NM_013383	ENSG00000108788	MLX	MAD7|MXD7|TCFL4|TF4|bHLHd13	MAX dimerization protein MLX	protein-coding
172881	chr4	3401471	3401630	+	0	NA	intron (NM_198227, intron 2 of 15)	intron (NM_198227, intron 2 of 15)	31352	NM_198227	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
145853	chr20	45892351	45892530	+	0	NA	exon (NM_000308, exon 5 of 15)	exon (NM_000308, exon 5 of 15)	1105	NM_000308	5476		NM_000308	ENSG00000064601	CTSA	GLB2|GSL|NGBE|PPCA|PPGB	cathepsin A	protein-coding
14161	chr1	121263201	121264180	+	0	NA	intron (NM_001271872, intron 2 of 9)	intron (NM_001271872, intron 2 of 9)	78715	NM_001271872	653464		NM_001271872	ENSG00000171943	SRGAP2C	SRGAP2P1	SLIT-ROBO Rho GTPase activating protein 2C	protein-coding
125688	chr2	20338071	20338330	+	0	NA	intron (NM_001352925, intron 1 of 19)	AluSx|SINE|Alu	-10814	NM_001282790	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
137916	chr2	200944401	200944830	+	0	NA	intron (NM_006190, intron 5 of 17)	AluJr|SINE|Alu	19045	NR_033915	4999		NM_006190	ENSG00000115942	ORC2	ORC2L	origin recognition complex subunit 2	protein-coding
235573	chrX	47480821	47481400	+	0	NA	intron (NM_001324150, intron 1 of 5)	L1M5|LINE|L1	-1606	NR_126059	203414		NR_126059		LINC01560	CXorf24	long intergenic non-protein coding RNA 1560	ncRNA
167589	chr3	129558001	129559180	+	0	NA	intron (NM_015103, intron 32 of 35)	intron (NM_015103, intron 32 of 35)	10205	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
204967	chr7	6377251	6377980	+	0	NA	intron (NM_018890, intron 1 of 6)	intron (NM_018890, intron 1 of 6)	3088	NM_018890	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
128603	chr2	60992721	60993580	+	0	NA	intron (NM_001322127, intron 4 of 16)	intron (NM_001322127, intron 4 of 16)	24062	NM_001322124	150962		NM_144709	ENSG00000162927	PUS10	CCDC139|DOBI|Hup10	pseudouridine synthase 10	protein-coding
134969	chr2	152166821	152167080	+	0	NA	intron (NM_005843, intron 1 of 13)	intron (NM_005843, intron 1 of 13)	8813	NM_005843	10254		NM_005843	ENSG00000115145	STAM2	Hbp|STAM2A|STAM2B	signal transducing adaptor molecule 2	protein-coding
44036	chr11	95149021	95149280	+	0	NA	Intergenic	MIRb|SINE|MIR	-1389	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
19104	chr1	171489901	171490100	+	0	NA	intron (NM_015172, intron 1 of 33)	AluSg|SINE|Alu	4470	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
97858	chr17	44985471	44985630	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-17247	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
127398	chr2	41895571	41895730	+	0	NA	Intergenic	MIRb|SINE|MIR	18095	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
179391	chr4	183657721	183657980	+	0	NA	intron (NM_152682, intron 1 of 6)	intron (NM_152682, intron 1 of 6)	1335	NM_152682	201965		NM_152682	ENSG00000182552	RWDD4	FAM28A|RWDD4A	RWD domain containing 4	protein-coding
210441	chr7	100101201	100102930	+	0	NA	promoter-TSS (NM_005916)	promoter-TSS (NM_005916)	417	NM_001363671	9179		NM_004722	ENSG00000221838	AP4M1	CPSQ3|MU-4|MU-ARP2|SPG50	adaptor related protein complex 4 subunit mu 1	protein-coding
82676	chr16	19721501	19721700	+	0	NA	intron (NM_001305121, intron 2 of 8)	AluSx1|SINE|Alu	-3373	NM_001348528	400506		NM_001012991	ENSG00000103550	KNOP1	101F10.1|C16orf88|FAM191A|TSG118	lysine rich nucleolar protein 1	protein-coding
65526	chr14	51911571	51911730	+	0	NA	intron (NM_053064, intron 2 of 3)	AluJr4|SINE|Alu	6921	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
141725	chr2	241858621	241859400	+	0	NA	promoter-TSS (NM_005018)	promoter-TSS (NM_005018)	-116	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
119047	chr19	39061251	39061750	+	0	NA	Intergenic	Intergenic	-22868	NM_001363687	390928		NM_001004318	ENSG00000183760	ACP7	PAPL|PAPL1	acid phosphatase 7, tartrate resistant (putative)	protein-coding
52459	chr12	55948451	55948950	+	0	NA	intron (NR_147026, intron 18 of 24)	AluJb|SINE|Alu	12692	NM_001351037	1606		NM_001345	ENSG00000065357	DGKA	DAGK|DAGK1|DGK-alpha	diacylglycerol kinase alpha	protein-coding
87680	chr16	74608741	74609850	+	0	NA	Intergenic	Intergenic	-2181	NM_001145666	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
167660	chr3	129829521	129830030	+	0	NA	intron (NM_001017395, intron 3 of 6)	intron (NM_001017395, intron 3 of 6)	-35163	NM_001349273	23023		NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
124013	chr19	55470721	55470980	+	0	NA	Intergenic	Intergenic	-5767	NM_033113	89887		NM_033113	ENSG00000197483	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
196414	chr6	43386171	43386780	+	0	NA	Intergenic	MER74B|LTR|ERVL	-16828	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
128953	chr2	64616951	64617450	+	0	NA	TTS (NR_034023)	TTS (NR_034023)	9888	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
68503	chr14	88189221	88189680	+	0	NA	intron (NM_138317, intron 5 of 6)	intron (NM_138317, intron 5 of 6)	81461	NM_138318	54207		NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
13618	chr1	116404651	116405150	+	0	NA	TTS (NR_024126)	TTS (NR_024126)	13659	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
125415	chr2	11749251	11749550	+	0	NA	intron (NM_001349205, intron 1 of 21)	intron (NM_001349205, intron 1 of 21)	867	NM_001349205	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
14868	chr1	146413171	146413330	+	0	NA	Intergenic	L1MB3|LINE|L1	36443	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
128704	chr2	61658801	61659000	+	0	NA	Intergenic	Charlie2a|DNA|hAT-Charlie	-120544	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
118751	chr19	38338171	38338530	+	0	NA	intron (NM_001330496, intron 3 of 27)	AluY|SINE|Alu	2520	NM_021185	57828		NM_021185	ENSG00000099338	CATSPERG	C19orf15	cation channel sperm associated auxiliary subunit gamma	protein-coding
234062	chrX	7147221	7149000	+	0	NA	promoter-TSS (NM_001178136)	promoter-TSS (NM_001178136)	43	NM_001178135	8226		NM_012080	ENSG00000130021	PUDP	DXF68S1E|FAM16AX|GS1|HDHD1|HDHD1A	pseudouridine 5'-phosphatase	protein-coding
219244	chr8	67028171	67029050	+	0	NA	promoter-TSS (NM_001364912)	promoter-TSS (NM_001364912)	-56	NM_001364911	286187		NM_001013626	ENSG00000178125	PPP1R42	LRRC67|TLLR|TLRR|dtr	protein phosphatase 1 regulatory subunit 42	protein-coding
139826	chr2	230415701	230416930	+	0	NA	promoter-TSS (NM_001206704)	promoter-TSS (NM_001206704)	114	NM_003113	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
185150	chr5	119323571	119323730	+	0	NA	intron (NM_001286815, intron 2 of 2)	intron (NM_001286815, intron 2 of 2)	-9525	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
202678	chr6	158792601	158792800	+	0	NA	intron (NM_003379, intron 1 of 12)	AluY|SINE|Alu	-25279	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
178864	chr4	154551721	154552850	+	0	NA	Intergenic	Intergenic	-1852	NM_001201564	5356		NM_002669	ENSG00000171566	PLRG1	Cwc1|PRL1|PRP46|PRPF46|TANGO4	pleiotropic regulator 1	protein-coding
40936	chr11	65299721	65299980	+	0	NA	Intergenic	AluSx1|SINE|Alu	-15016	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
206125	chr7	27457821	27458140	+	0	NA	Intergenic	Intergenic	-157994	NR_122123	790953		NR_122122		TSL	-	testis-expressed, seven-twelve, leukemia	ncRNA
74514	chr15	60392651	60393680	+	0	NA	intron (NM_001136015, intron 1 of 13)	intron (NM_001136015, intron 1 of 13)	4821	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
168152	chr3	139113971	139114130	+	0	NA	intron (NR_026783, intron 2 of 2)	intron (NR_026783, intron 2 of 2)	9865	NR_026783	60467		NM_021812	ENSG00000232416	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis candidate 1	ncRNA
222514	chr8	140544901	140545730	+	0	NA	intron (NM_012154, intron 13 of 18)	L2c|LINE|L2	33319	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
224289	chr9	6426421	6426680	+	0	NA	intron (NR_046386, intron 2 of 16)	intron (NR_046386, intron 2 of 16)	13351	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
81474	chr16	8913051	8913150	+	0	NA	intron (NR_135826, intron 10 of 30)	AluSx|SINE|Alu	23539	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
161035	chr3	37998401	38000050	+	0	NA	intron (NM_015873, intron 10 of 19)	intron (NM_015873, intron 10 of 19)	5087	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
11429	chr1	89755971	89756450	+	0	NA	Intergenic	Intergenic	-64822	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
15421	chr1	150262371	150262930	+	0	NA	TTS (NR_145745)	TTS (NR_145745)	956	NR_145745	109616989		NR_145745		SNORD13C	-	small nucleolar RNA, C/D box 13C	snoRNA
4585	chr1	22073321	22074050	+	0	NA	intron (NM_044472, intron 1 of 5)	AluJo|SINE|Alu	20976	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
214839	chr7	151275151	151275250	+	0	NA	5' UTR (NM_003078, exon 2 of 14)	5' UTR (NM_003078, exon 2 of 14)	1534	NM_001003802	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
238735	chrX	154277071	154277230	+	0	NA	intron (NM_001205201, intron 3 of 4)	intron (NM_001205201, intron 3 of 4)	17951	NM_001586	1527		NM_001586	ENSG00000278057	TEX28	CXorf2|MRX99|TEX28P1|TEX28P2|fTEX	testis expressed 28	protein-coding
31663	chr10	97420951	97421650	+	0	NA	intron (NR_157582, intron 1 of 1)	HY1|scRNA|scRNA	4757	NR_157582	644215		NR_157582		LOC644215	-	uncharacterized LOC644215	ncRNA
194512	chr6	33291721	33292500	+	0	NA	exon (NM_001243738, exon 17 of 17)	exon (NM_001243738, exon 17 of 17)	1865	NR_106892	102465501		NR_106892	ENSG00000284064	MIR6834	hsa-mir-6834	microRNA 6834	ncRNA
26159	chr10	14196851	14197230	+	0	NA	intron (NR_134578, intron 2 of 3)	intron (NR_134578, intron 2 of 3)	122756	NR_120638	101928453		NR_120638		LOC101928453	-	uncharacterized LOC101928453	ncRNA
187434	chr5	142070021	142070280	+	0	NA	Intergenic	Intergenic	-38629	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
90997	chr17	2755321	2756650	+	0	NA	Intergenic	CpG	-6333	NM_001355573	101928991		NM_001355573	ENSG00000277200	CCDC92B	-	coiled-coil domain containing 92B	protein-coding
188622	chr5	157207221	157208380	+	0	NA	intron (NM_005546, intron 1 of 16)	Ricksha_b|DNA|MULE-MuDR	26960	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
155303	chr22	38181501	38182250	+	0	NA	promoter-TSS (NM_001349868)	promoter-TSS (NM_001349868)	-45	NM_001349866	8398		NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding
117252	chr19	19443671	19444050	+	0	NA	intron (NM_001384516, intron 2 of 12)	intron (NM_001384516, intron 2 of 12)	8797	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
217561	chr8	29385971	29386530	+	0	NA	Intergenic	Intergenic	-35566	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
64340	chr14	24013551	24014300	+	0	NA	intron (NR_102687, intron 1 of 3).2	HERVK-int|LTR|ERVK	6841	NM_001277864	728635		NM_001082488		DHRS4L1	SDR25C4	dehydrogenase/reductase 4 like 1 (pseudogene)	pseudo
107060	chr18	32549301	32549550	+	0	NA	Intergenic	Intergenic	37762	NR_003558	441818		NR_003558	ENSG00000293029	WBP11P1	HsT3017	WBP11 pseudogene 1	pseudo
67816	chr14	73786701	73788050	+	0	NA	promoter-TSS (NR_109995)	promoter-TSS (NR_109995)	15	NR_109995	100506476		NR_109995		MIDEAS-AS1	-	MIDEAS antisense RNA 1	ncRNA
9041	chr1	44791771	44791930	+	0	NA	Intergenic	MIR|SINE|MIR	-3680	NM_153274	266675		NM_153274	ENSG00000142959	BEST4	VMD2L2	bestrophin 4	protein-coding
110080	chr19	1510571	1511230	+	0	NA	exon (NM_213604, exon 2 of 12)	exon (NM_213604, exon 2 of 12)	2119	NM_001367197	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
146957	chr20	52404571	52405090	+	0	NA	Intergenic	Intergenic	-212845	NM_199427	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
158388	chr22	50505021	50505680	+	0	NA	intron (NM_033200, intron 7 of 13)	intron (NM_033200, intron 7 of 13)	2352	NM_033200	91289		NM_033200	ENSG00000100258	LMF2	TMEM112B|TMEM153	lipase maturation factor 2	protein-coding
200581	chr6	136510371	136511000	+	0	NA	intron (NM_003980, intron 1 of 17)	MER44A|DNA|TcMar-Tigger	15528	NM_001198609	9053		NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
2537	chr1	9723821	9724100	+	0	NA	intron (NM_001350234, intron 20 of 23)	intron (NM_001350234, intron 20 of 23)	32493	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
195729	chr6	39223901	39224100	+	0	NA	intron (NM_003740, intron 1 of 4)	intron (NM_003740, intron 1 of 4)	5475	NM_003740	8645		NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding
220057	chr8	93752471	93752980	+	0	NA	Intergenic	LTR45|LTR|ERV1	-2119	NM_001142301	91147		NM_153704	ENSG00000164953	TMEM67	JBTS6|MECKELIN|MKS3|NPHP11|TNEM67	transmembrane protein 67	protein-coding
43685	chr11	85822121	85822380	+	0	NA	Intergenic	Intergenic	-11091	NM_001289608	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
165620	chr3	101692351	101692850	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-5882	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
65722	chr14	53054951	53055250	+	0	NA	intron (NM_030637, intron 10 of 11)	intron (NM_030637, intron 10 of 11)	98223	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
42510	chr11	70353451	70353630	+	0	NA	intron (NM_001378006, intron 18 of 31)	intron (NM_001378006, intron 18 of 31)	-44966	NM_138565	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
166241	chr3	112285101	112285300	+	0	NA	intron (NM_183061, intron 2 of 28)	AluY|SINE|Alu	9016	NM_183061	285335		NM_183061	ENSG00000172139	SLC9C1	NHE|NHE-10|SLC9A10|sperm-NHE	solute carrier family 9 member C1	protein-coding
111398	chr19	3760571	3762000	+	0	NA	intron (NM_004886, intron 1 of 10)	(CCCCAGA)n|Simple_repeat|Simple_repeat	407	NM_004886	9546		NM_004886	ENSG00000011132	APBA3	MGC:15815|X11L2|mint3	amyloid beta precursor protein binding family A member 3	protein-coding
151318	chr21	45556871	45557550	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	5815	NM_001352511	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
192987	chr6	28090901	28091280	+	0	NA	non-coding (NR_024063, exon 1 of 2)	non-coding (NR_024063, exon 1 of 2)	283	NR_024063	221584		NR_024063		ZSCAN12P1	ZNF187p1|ZNF305P1|ZNF96L1|ZNF96P1|ZSCAN12L1|dJ313I6.7	zinc finger and SCAN domain containing 12 pseudogene 1	pseudo
177458	chr4	113638071	113638300	+	0	NA	intron (NM_172129, intron 3 of 17)	intron (NM_172129, intron 3 of 17)	123553	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
129451	chr2	69535901	69536330	+	0	NA	intron (NM_001371577, intron 5 of 14)	MIR|SINE|MIR	-15944	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
138107	chr2	202276071	202276880	+	0	NA	promoter-TSS (NR_003058)	promoter-TSS (NR_003058)	44	NR_003058	692110		NR_003058	ENSG00000212534	SNORD70	HBII-234|SNORD70A	small nucleolar RNA, C/D box 70	snoRNA
208109	chr7	57305351	57305450	+	0	NA	Intergenic	Intergenic	-83226	NR_136269	105375297		NR_136269	ENSG00000234089	LOC105375297	-	uncharacterized LOC105375297	ncRNA
146607	chr20	50148101	50148680	+	0	NA	intron (NM_199129, intron 1 of 5)	MIR3|SINE|MIR	5333	NM_001162505	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
119404	chr19	40260821	40261080	+	0	NA	intron (NM_001243028, intron 1 of 12)	AluJb|SINE|Alu	4401	NM_001330511	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
210337	chr7	99502921	99503350	+	0	NA	Intergenic	AluJb|SINE|Alu	-1527	NM_001318082	23660		NM_014569	ENSG00000196652	ZKSCAN5	ZFP-95|ZFP95|ZNF914|ZSCAN37	zinc finger with KRAB and SCAN domains 5	protein-coding
179846	chr5	492751	493050	+	0	NA	intron (NM_001284351, intron 1 of 16)	intron (NM_001284351, intron 1 of 16)	19664	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
110201	chr19	1724201	1724700	+	0	NA	Intergenic	AluSq2|SINE|Alu	-29056	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
6264	chr1	27575171	27576230	+	0	NA	intron (NM_001029882, intron 1 of 6)	CpG	27794	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
120254	chr19	42426521	42426780	+	0	NA	exon (NM_005357, exon 1 of 10)	exon (NM_005357, exon 1 of 10)	738	NM_005357	3991		NM_005357	ENSG00000079435	LIPE	AOMS4|FPLD6|HSL|LHS|REH	lipase E, hormone sensitive type	protein-coding
218266	chr8	42220071	42220230	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-12585	NM_001319189	5327		NM_000930	ENSG00000104368	PLAT	T-PA|TPA	plasminogen activator, tissue type	protein-coding
232160	chr9	134117021	134117380	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-17999	NM_001384414	11091		NM_017588	ENSG00000196363	WDR5	BIG-3|BIG3|CFAP89|SWD3	WD repeat domain 5	protein-coding
94097	chr17	27654471	27655180	+	0	NA	Intergenic	Intergenic	23637	NM_009587	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
101635	chr17	68234521	68235930	+	0	NA	intron (NM_001346472, intron 2 of 7)	intron (NM_001346472, intron 2 of 7)	-12349	NM_001346474	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
108438	chr18	69981771	69982380	+	0	NA	Intergenic	Intergenic	-25276	NM_006566	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
51894	chr12	53568901	53569100	+	0	NA	intron (NR_159377, intron 2 of 14)	AluJo|SINE|Alu	55016	NR_046221	100652999		NR_046221	ENSG00000257550	LOC100652999	-	uncharacterized LOC100652999	ncRNA
132666	chr2	108766771	108767130	+	0	NA	exon (NM_006267, exon 20 of 29)	exon (NM_006267, exon 20 of 29)	-19800	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
76252	chr15	73999971	74000330	+	0	NA	intron (NM_033238, intron 2 of 8)	intron (NM_033238, intron 2 of 8)	5434	NM_033244	5371		NM_002675	ENSG00000140464	PML	MYL|PP8675|RNF71|TRIM19	PML nuclear body scaffold	protein-coding
57947	chr12	123713771	123714750	+	0	NA	intron (NM_012463, intron 1 of 19)	intron (NM_012463, intron 1 of 19)	1907	NM_012463	23545		NM_012463	ENSG00000185344	ATP6V0A2	A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS|a2V	ATPase H+ transporting V0 subunit a2	protein-coding
182208	chr5	56838201	56838800	+	0	NA	intron (NM_005921, intron 1 of 19)	AmnSINE1|SINE|5S-Deu-L2	22951	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
229275	chr9	120578371	120579030	+	0	NA	intron (NM_018249, intron 1 of 37)	AluJb|SINE|Alu	1467	NM_001011649	55755		NM_018249	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
76434	chr15	74798071	74798880	+	0	NA	intron (NM_001127190, intron 3 of 13)	intron (NM_001127190, intron 3 of 13)	-9718	NR_039738	100616183		NR_039738	ENSG00000264386	MIR4513	-	microRNA 4513	ncRNA
167355	chr3	128765551	128766200	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSq2|SINE|Alu	39692	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
162910	chr3	49406671	49409080	+	0	NA	intron (NM_001313941, intron 1 of 5)	(AT)n|Simple_repeat|Simple_repeat	4101	NM_001313947	387		NM_001664	ENSG00000067560	RHOA	ARH12|ARHA|EDFAOB|RHO12|RHOH12	ras homolog family member A	protein-coding
95469	chr17	36190771	36191130	+	0	NA	Intergenic	Intergenic	5356	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
91461	chr17	4829051	4829830	+	0	NA	Intergenic	AluSx|SINE|Alu	-3900	NM_015716	50488		NM_015716	ENSG00000141503	MINK1	B55|MAP4K6|MEKKK 6|MINK|YSK2|ZC3	misshapen like kinase 1	protein-coding
218298	chr8	42458151	42458250	+	0	NA	intron (NM_001257180, intron 5 of 10)	intron (NM_001257180, intron 5 of 10)	43031	NM_001257180	6575		NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC2|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding
46678	chr11	128732901	128733180	+	0	NA	intron (NM_001271010, intron 1 of 9)	MER103C|DNA|hAT-Charlie	-37017	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
202800	chr6	159132771	159133150	+	0	NA	Intergenic	Intergenic	-36440	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
132698	chr2	108982001	108982200	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	7120	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
70848	chr14	103700551	103700650	+	0	NA	intron (NM_001371232, intron 7 of 9)	intron (NM_001371232, intron 7 of 9)	14851	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
49656	chr12	28777671	28778200	+	0	NA	Intergenic	Intergenic	-371343	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
91800	chr17	7029451	7030150	+	0	NA	TTS (NM_181844)	TTS (NM_181844)	-6215	NM_201566	201232		NM_201566	ENSG00000174327	SLC16A13	MCT13	solute carrier family 16 member 13	protein-coding
65214	chr14	49773321	49773800	+	0	NA	intron (NM_014315, intron 2 of 12)	AluJb|SINE|Alu	5407	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
18517	chr1	161773101	161773400	+	0	NA	intron (NM_007348, intron 1 of 15)	AluY|SINE|Alu	6930	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
190828	chr6	1552471	1553000	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-52796	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
234236	chrX	13051321	13052050	+	0	NA	Intergenic	Intergenic	-7065	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
145289	chr20	41033551	41033850	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	4878	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
227155	chr9	86348401	86349230	+	0	NA	intron (NM_024617, intron 2 of 26)	intron (NM_024617, intron 2 of 26)	5595	NM_001185074	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
135400	chr2	160666171	160666700	+	0	NA	Intergenic	Intergenic	-172628	NM_002897	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
19092	chr1	171252471	171252730	+	0	NA	intron (NM_001282694, intron 1 of 7)	intron (NM_001282694, intron 1 of 7)	4106	NM_001282693	2326		NM_002021	ENSG00000010932	FMO1	-	flavin containing dimethylaniline monoxygenase 1	protein-coding
97912	chr17	45134201	45134400	+	0	NA	intron (NM_001378112, intron 1 of 9)	AluJo|SINE|Alu	-1387	NM_001378111	79777		NM_024722	ENSG00000181513	ACBD4	HMFT0700	acyl-CoA binding domain containing 4	protein-coding
70141	chr14	100281821	100282080	+	0	NA	3' UTR (NM_003403, exon 5 of 5)	3' UTR (NM_003403, exon 5 of 5)	4593	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
233756	chrX	1394601	1395250	+	0	NA	Intergenic	Intergenic	-2100	NR_130733	751580		NR_130733	ENSG00000236871	LINC00106	CXYorf8|NCRNA00106	long intergenic non-protein coding RNA 106	ncRNA
226745	chr9	76023751	76024930	+	0	NA	intron (NM_006200, intron 4 of 20)	intron (NM_006200, intron 4 of 20)	133667	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
224853	chr9	28348451	28348750	+	0	NA	intron (NM_001354574, intron 4 of 5)	L1PA2|LINE|L1	370705	NM_152570	158038		NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
72499	chr15	33075051	33075150	+	0	NA	intron (NM_001277313, intron 5 of 20)	MIR|SINE|MIR	-6926	NM_001103184	342184		NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding
25793	chr10	11174771	11175100	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	9905	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
33553	chr10	119304701	119304900	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	-73172	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
186815	chr5	139387501	139388330	+	0	NA	exon (NM_016459, exon 4 of 4)	exon (NM_016459, exon 4 of 4)	1998	NM_016459	51237		NM_016459	ENSG00000170476	MZB1	MEDA-7|PACAP|pERp1	marginal zone B and B1 cell specific protein	protein-coding
155009	chr22	37335901	37336430	+	0	NA	Intergenic	Intergenic	18674	NR_110515	100506271		NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA
562	chr1	1254321	1254580	+	0	NA	3' UTR (NM_058167, exon 7 of 7)	3' UTR (NM_058167, exon 7 of 7)	-7728	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
105593	chr18	598151	598450	+	0	NA	intron (NM_014410, intron 1 of 8)	intron (NM_014410, intron 1 of 8)	1302	NM_001289036	27098		NM_014410	ENSG00000079101	CLUL1	RA337M	clusterin like 1	protein-coding
50501	chr12	47806421	47806950	+	0	NA	intron (NR_160436, intron 1 of 25)	AluSx1|SINE|Alu	13218	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
119172	chr19	39414831	39417080	+	0	NA	intron (NM_022835, intron 4 of 18)	MER81|DNA|hAT-Blackjack	2176	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
75833	chr15	69458821	69459380	+	0	NA	Intergenic	Intergenic	6282	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
238869	chrX	154531321	154531580	+	0	NA	TTS (NM_001360016)	TTS (NM_001360016)	-9788	NM_001377312	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
108867	chr18	79381901	79382100	+	0	NA	Intergenic	Intergenic	-13930	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
88433	chr16	84755401	84755600	+	0	NA	intron (NR_073578, intron 3 of 10)	intron (NR_073578, intron 3 of 10)	55500	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
34416	chr10	132402401	132403150	+	0	NA	intron (NM_138499, intron 1 of 2)	intron (NM_138499, intron 1 of 2)	5575	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
214765	chr7	151081871	151082180	+	0	NA	intron (NM_031434, intron 2 of 2)	CpG	994	NM_031434	83590		NM_031434	ENSG00000164897	TMUB1	C7orf21|DULP|HOPS|SB144	transmembrane and ubiquitin like domain containing 1	protein-coding
94129	chr17	28249851	28250450	+	0	NA	Intergenic	Intergenic	2706	NR_002181	23614		NM_021092	ENSG00000290672	PPY2P	PPY2	pancreatic polypeptide 2, pseudogene	pseudo
46367	chr11	126210921	126212380	+	0	NA	promoter-TSS (NM_001144827)	promoter-TSS (NM_001144827)	0	NM_032795	84881		NM_032795	ENSG00000165526	RPUSD4	-	RNA pseudouridine synthase D4	protein-coding
2835	chr1	11062901	11063850	+	0	NA	Intergenic	Intergenic	-3357	NM_003132	6723		NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
74226	chr15	56491171	56491430	+	0	NA	Intergenic	Intergenic	-26163	NM_018365	55329		NM_018365	ENSG00000138587	MNS1	HTX9|SPATA40	meiosis specific nuclear structural 1	protein-coding
125326	chr2	10790271	10791130	+	0	NA	intron (NM_001282706, intron 8 of 13)	intron (NM_001282706, intron 8 of 13)	22085	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
58210	chr12	126874451	126874630	+	0	NA	non-coding (NR_033970, exon 1 of 3)	non-coding (NR_033970, exon 1 of 3)	150	NR_033970	440117		NR_033970	ENSG00000249873	LINC02372	-	long intergenic non-protein coding RNA 2372	ncRNA
131131	chr2	91477601	91478430	+	0	NA	Intergenic	CpG	181934	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
35001	chr11	530501	531100	+	0	NA	Intergenic	Intergenic	4767	NM_176795	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
31009	chr10	88582401	88583450	+	0	NA	intron (NM_018363, intron 1 of 6)	CpG	393	NM_001031709	55328		NM_018363	ENSG00000184719	RNLS	C10orf59|RENALASE	renalase, FAD dependent amine oxidase	protein-coding
169771	chr3	172635451	172635790	+	0	NA	intron (NM_001146276, intron 4 of 4)	intron (NM_001146276, intron 4 of 4)	-40013	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
27916	chr10	41899771	41900530	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	467895	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
111366	chr19	3693971	3694850	+	0	NA	intron (NM_001300849, intron 1 of 16)	intron (NM_001300849, intron 1 of 16)	6058	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
36732	chr11	9251201	9252100	+	0	NA	intron (NM_001243254, intron 1 of 22)	intron (NM_001243254, intron 1 of 22)	13676	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
193494	chr6	30555401	30558380	+	0	NA	promoter-TSS (NM_025263).3	promoter-TSS (NM_025263).3	181	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
134806	chr2	148051401	148051600	+	0	NA	intron (NM_018328, intron 2 of 14)	L1MB7|LINE|L1	-29896	NM_181742	5000		NM_002552	ENSG00000115947	ORC4	ORC4L|ORC4P	origin recognition complex subunit 4	protein-coding
46169	chr11	123087401	123088580	+	0	NA	intron (NM_024769, intron 2 of 6)	AluSp|SINE|Alu	-25854	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
147088	chr20	53841401	53841630	+	0	NA	Intergenic	AluJr4|SINE|Alu	34194	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
191474	chr6	11144351	11144830	+	0	NA	Intergenic	Intergenic	-32865	NM_207582	405754		NM_207582	ENSG00000244476	ERVFRD-1	ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD	endogenous retrovirus group FRD member 1, envelope	protein-coding
140894	chr2	237674521	237675800	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-17004	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
123954	chr19	55396271	55396980	+	0	NA	intron (NM_001363697, intron 4 of 4)	AluY|SINE|Alu	6032	NR_145781	109623451		NR_145781		SNORD157	-	small nucleolar RNA, C/D box 157	snoRNA
236508	chrX	71992271	71993430	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	-51559	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
113901	chr19	10687651	10687950	+	0	NA	intron (NM_012218, intron 18 of 19)	intron (NM_012218, intron 18 of 19)	-13639	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
104198	chr17	80469771	80470100	+	0	NA	3' UTR (NM_002522, exon 5 of 5)	3' UTR (NM_002522, exon 5 of 5)	6672	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
165402	chr3	97815651	97816030	+	0	NA	Intergenic	AluJb|SINE|Alu	-6171	NM_153605	131544		NM_153605	ENSG00000080200	CRYBG3	DKFZp667G2110|vlAKAP	crystallin beta-gamma domain containing 3	protein-coding
36474	chr11	6229921	6230600	+	0	NA	intron (NM_001098794, intron 1 of 11)	intron (NM_001098794, intron 1 of 11)	4376	NM_032127	84067		NM_032127	ENSG00000051009	FHIP1B	C11orf56|FAM160A2|FHIP	FHF complex subunit HOOK interacting protein 1B	protein-coding
94327	chr17	28785651	28785950	+	0	NA	intron (NM_001288636, intron 3 of 5)	AluSc8|SINE|Alu	26671	NM_001288634	55731		NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding
68222	chr14	76924321	76925180	+	0	NA	Intergenic	Intergenic	-34888	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
13817	chr1	117616651	117616750	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	10652	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
139595	chr2	224994371	224994530	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	-12023	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
8501	chr1	40857721	40858230	+	0	NA	Intergenic	LTR16A|LTR|ERVL	4388	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
102230	chr17	75239751	75239850	+	0	NA	exon (NM_001172704, exon 12 of 16)	exon (NM_001172704, exon 12 of 16)	21806	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
14667	chr1	145814451	145814830	+	0	NA	intron (NM_014455, intron 1 of 8)	intron (NM_014455, intron 1 of 8)	9455	NM_014455	27246		NM_014455	ENSG00000265491	RNF115	BCA2|RABRING7|ZFP364|ZNF364	ring finger protein 115	protein-coding
188400	chr5	153960271	153961030	+	0	NA	Intergenic	Intergenic	-61663	NR_146729	105378238		NR_146729	ENSG00000251183	LINC01861	-	long intergenic non-protein coding RNA 1861	ncRNA
152434	chr22	20586951	20587130	+	0	NA	3' UTR (NM_001293237, exon 17 of 17)	3' UTR (NM_001293237, exon 17 of 17)	78993	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
41975	chr11	67368371	67369250	+	0	NA	intron (NM_001166212, intron 1 of 2)	intron (NM_001166212, intron 1 of 2)	4788	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
197445	chr6	73747051	73747780	+	0	NA	intron (NM_001159588, intron 4 of 31)	L2c|LINE|L2	51212	NM_133493	135228		NM_133493	ENSG00000156535	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
113651	chr19	10361571	10362250	+	0	NA	exon (NM_003331, exon 13 of 25)	exon (NM_003331, exon 13 of 25)	18662	NM_001385207	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
123604	chr19	54497621	54498330	+	0	NA	Intergenic	Intergenic	-4856	NM_002288	3904		NM_002288	ENSG00000167618	LAIR2	CD306	leukocyte associated immunoglobulin like receptor 2	protein-coding
225374	chr9	34988321	34988700	+	0	NA	intron (NR_109756, intron 1 of 1)	intron (NR_109756, intron 1 of 1)	869	NR_109756	101926900		NR_109756	ENSG00000281491	DNAJB5-DT	DNAJB5-AS1	DNAJB5 divergent transcript	ncRNA
79445	chr16	712801	713680	+	0	NA	Intergenic	AluSp|SINE|Alu	-1878	NM_024042	79006		NM_024042	ENSG00000103260	METRN	C16orf23|c380A1.2	meteorin, glial cell differentiation regulator	protein-coding
108361	chr18	67516061	67517530	+	0	NA	promoter-TSS (NM_032160)	promoter-TSS (NM_032160)	-75	NM_032160	92126		NM_032160	ENSG00000171451	DSEL	C18orf4|DE-epi2	dermatan sulfate epimerase like	protein-coding
122362	chr19	49347621	49348000	+	0	NA	intron (NM_001256661, intron 9 of 12)	intron (NM_001256661, intron 9 of 12)	12404	NM_001040031	951		NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
37084	chr11	12893871	12894300	+	0	NA	intron (NM_021961, intron 9 of 12)	intron (NM_021961, intron 9 of 12)	95463	NR_038904	100506305		NR_038904	ENSG00000251381	LINC00958	BLACAT2	long intergenic non-protein coding RNA 958	ncRNA
9113	chr1	45328851	45329150	+	0	NA	TTS (NM_001293195)	TTS (NM_001293195)	2105	NM_032756	84842		NM_032756	ENSG00000186603	HPDL	4-HPPD-L|GLOXD1|NEDSWMA|SPG83	4-hydroxyphenylpyruvate dioxygenase like	protein-coding
179879	chr5	630221	630780	+	0	NA	intron (NR_164122, intron 4 of 15)	intron (NR_164122, intron 4 of 15)	18160	NM_018140	55722		NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72	protein-coding
200306	chr6	132826851	132826950	+	0	NA	Intergenic	AluY|SINE|Alu	9681	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
97657	chr17	44206371	44207000	+	0	NA	non-coding (NR_045058, exon 21 of 21)	non-coding (NR_045058, exon 21 of 21)	1154	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
193006	chr6	28217771	28217930	+	0	NA	non-coding (NR_002936, exon 1 of 1)	non-coding (NR_002936, exon 1 of 1)	1079	NR_002936	222699		NR_002936		TOB2P1	TOB2P|TOB4p|p373c6.3	transducer of ERBB2, 2 pseudogene 1	pseudo
232313	chr9	134689651	134689750	+	0	NA	intron (NM_001278074, intron 1 of 65)	MLT1K|LTR|ERVL-MaLR	-36857	NR_138049	414316		NR_138049		COL5A1-AS1	C9orf104|bA54A22.4	COL5A1 antisense RNA 1	ncRNA
80603	chr16	2949401	2949600	+	0	NA	3' UTR (NM_001308068, exon 10 of 10)	3' UTR (NM_001308068, exon 10 of 10)	-14775	NM_001253726	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
109894	chr19	1271351	1272550	+	0	NA	intron (NR_023313, intron 4 of 5)	intron (NR_023313, intron 4 of 5)	-1690	NR_027271	148046		NM_152480	ENSG00000267493	CIRBP-AS1	C19orf23	CIRBP antisense RNA 1	ncRNA
47839	chr12	6605021	6605800	+	0	NA	intron (NM_001273, intron 2 of 39)	intron (NM_001273, intron 2 of 39)	1041	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
38853	chr11	47333701	47334300	+	0	NA	exon (NM_000256, exon 27 of 34)	exon (NM_000256, exon 27 of 34)	18702	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
5411	chr1	25538451	25538750	+	0	NA	Intergenic	Intergenic	-5006	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
119068	chr19	39131651	39131950	+	0	NA	intron (NM_001014834, intron 1 of 7)	intron (NM_001014834, intron 1 of 7)	6014	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
7478	chr1	33144051	33144750	+	0	NA	TTS (NM_018207)	TTS (NM_018207)	32150	NM_001330483	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
16743	chr1	155278101	155278850	+	0	NA	intron (NM_020897, intron 1 of 7)	intron (NM_020897, intron 1 of 7)	1012	NM_020897	57657		NM_020897	ENSG00000143630	HCN3	-	hyperpolarization activated cyclic nucleotide gated potassium channel 3	protein-coding
116522	chr19	18171401	18172330	+	0	NA	Intergenic	Intergenic	-1948	NM_006332	10437		NM_006332	ENSG00000216490	IFI30	GILT|IFI-30|IP-30|IP30	IFI30 lysosomal thiol reductase	protein-coding
14378	chr1	144151801	144152300	+	0	NA	Intergenic	REP522|Satellite|telo	96155	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
230015	chr9	127092271	127092430	+	0	NA	intron (NM_012098, intron 3 of 4)	intron (NM_012098, intron 3 of 4)	30285	NM_012098	23452		NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
143428	chr20	29876701	29877100	+	0	NA	Intergenic	(CTCCCT)n|Simple_repeat|Simple_repeat	-3484	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
66249	chr14	61352521	61353050	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	31342	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
13034	chr1	111221271	111222360	+	0	NA	Intergenic	Intergenic	-5844	NM_001025197	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
1914	chr1	6467151	6467250	+	0	NA	3' UTR (NM_198681, exon 22 of 22)	3' UTR (NM_198681, exon 22 of 22)	-1005	NM_148966	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
111730	chr19	4350451	4350830	+	0	NA	intron (NM_032868, intron 3 of 11)	L2a|LINE|L2	7078	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
102384	chr17	75575471	75575630	+	0	NA	TTS (NM_001031803)	TTS (NM_001031803)	-12508	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
20484	chr1	198637771	198637930	+	0	NA	Intergenic	(AAT)n|Simple_repeat|Simple_repeat	-1118	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
204948	chr7	6343871	6344530	+	0	NA	intron (NM_001037163, intron 1 of 1)	intron (NM_001037163, intron 1 of 1)	4767	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
173863	chr4	23615101	23615350	+	0	NA	Intergenic	L1HS|LINE|L1	266067	NM_001330753	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
157208	chr22	43153821	43154430	+	0	NA	intron (NM_001256530, intron 1 of 3)	intron (NM_001256530, intron 1 of 3)	2190	NM_001256530	706		NM_000714	ENSG00000100300	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|TSPO1|mDRC|pk18	translocator protein	protein-coding
65655	chr14	52351871	52352900	+	0	NA	Intergenic	Intergenic	38073	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
59598	chr13	27621301	27622500	+	0	NA	promoter-TSS (NM_015972)	promoter-TSS (NM_015972)	8	NM_015972	51082		NM_015972	ENSG00000186184	POLR1D	AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2	RNA polymerase I and III subunit D	protein-coding
123703	chr19	55026071	55026230	+	0	NA	intron (NM_001083899, intron 4 of 7).8	intron (NM_001083899, intron 4 of 7).8	12114	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
170557	chr3	186789901	186790900	+	0	NA	TTS (NM_001967)	TTS (NM_001967)	2787	NR_002588	619568		NR_002588	ENSG00000263776	SNORA4	ACA4	small nucleolar RNA, H/ACA box 4	snoRNA
2253	chr1	8906621	8906880	+	0	NA	Intergenic	AluY|SINE|Alu	27915	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
183526	chr5	79741551	79741650	+	0	NA	intron (NM_153610, intron 2 of 12)	intron (NM_153610, intron 2 of 12)	51764	NM_153610	202333		NM_153610	ENSG00000164309	CMYA5	C5orf10|SPRYD2|TRIM76	cardiomyopathy associated 5	protein-coding
119096	chr19	39299271	39300400	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	3428	NM_172140	282618		NM_172140	ENSG00000182393	IFNL1	IL-29|IL29	interferon lambda 1	protein-coding
68675	chr14	90299501	90299900	+	0	NA	intron (NM_017970, intron 7 of 13)	intron (NM_017970, intron 7 of 13)	32241	NM_017970	55051		NM_017970	ENSG00000119720	NRDE2	C14orf102	NRDE-2, necessary for RNA interference, domain containing	protein-coding
159016	chr3	10549001	10549200	+	0	NA	intron (NM_001353564, intron 1 of 20)	MIR|SINE|MIR	-43514	NM_001001331	491		NM_001683	ENSG00000157087	ATP2B2	DFNA82|PMCA2|PMCA2a|PMCA2i	ATPase plasma membrane Ca2+ transporting 2	protein-coding
201261	chr6	144151101	144152900	+	0	NA	intron (NM_003764, intron 1 of 1)	L2b|LINE|L2	1483	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
76772	chr15	76998721	76999280	+	0	NA	intron (NR_135552, intron 1 of 11)	intron (NR_135552, intron 1 of 11)	3874	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
82132	chr16	14726601	14726800	+	0	NA	TTS (NM_001277323)	TTS (NM_001277323)	15011	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
81536	chr16	9102771	9103650	+	0	NA	exon (NM_014117, exon 3 of 4)	exon (NM_014117, exon 3 of 4)	11566	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
101552	chr17	68017301	68018130	+	0	NA	Intergenic	Intergenic	-18020	NM_002266	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
218784	chr8	58999551	58999650	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	119547	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
29666	chr10	72033301	72033500	+	0	NA	Intergenic	AluJo|SINE|Alu	55151	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
68714	chr14	90697451	90697890	+	0	NA	intron (NR_135190, intron 1 of 1)	intron (NR_135190, intron 1 of 1)	337	NR_135190	105370622		NR_135190	ENSG00000258716	LOC105370622	-	uncharacterized LOC105370622	ncRNA
153726	chr22	29299471	29299950	+	0	NA	exon (NM_013986, exon 17 of 18)	exon (NM_013986, exon 17 of 18)	-7313	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
98048	chr17	45439701	45440300	+	0	NA	intron (NM_014798, intron 10 of 11).3	intron (NM_014798, intron 10 of 11).3	-7130	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
135622	chr2	168185171	168185930	+	0	NA	intron (NM_013233, intron 1 of 17)	L4_C_Mam|LINE|RTE-X	62045	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
9326	chr1	46552321	46552580	+	0	NA	promoter-TSS (NM_001322255)	promoter-TSS (NM_001322255)	-803	NM_001322255	148930		NM_182516	ENSG00000162456	KNCN	Kino|L5	kinocilin	protein-coding
146365	chr20	49269771	49270380	+	0	NA	exon (NM_021035, exon 3 of 14)	exon (NM_021035, exon 3 of 14)	7982	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
102017	chr17	74841101	74841930	+	0	NA	TTS (NR_103735)	TTS (NR_103735)	18369	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
232019	chr9	133366501	133366700	+	0	NA	exon (NM_001280789, exon 3 of 6).2	exon (NM_001280789, exon 3 of 6).2	9460	NM_033161	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
1651	chr1	3811471	3811630	+	0	NA	TTS (NM_014704)	TTS (NM_014704)	-15052	NM_020710	57470		NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding
92185	chr17	7824121	7824580	+	0	NA	intron (NM_020877, intron 76 of 85)	intron (NM_020877, intron 76 of 85)	-15556	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
35873	chr11	2389271	2389930	+	0	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-11150	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
114209	chr19	11437651	11438080	+	0	NA	intron (NM_001001329, intron 3 of 17)	intron (NM_001001329, intron 3 of 17)	-2083	NM_001302453	115948		NM_145045	ENSG00000198003	ODAD3	CCDC151|CILD30|ODA10	outer dynein arm docking complex subunit 3	protein-coding
185107	chr5	119271271	119272200	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	2976	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
80069	chr16	1983571	1984930	+	0	NA	promoter-TSS (NM_005262)	promoter-TSS (NM_005262)	57	NM_005262	2671		NM_005262	ENSG00000127554	GFER	ALR|ERV1|HERV1|HPO|HPO1|HPO2|HSS|MMCHD|MPMCD	growth factor, augmenter of liver regeneration	protein-coding
211714	chr7	106870921	106871400	+	0	NA	intron (NM_001282426, intron 2 of 10)	intron (NM_001282426, intron 2 of 10)	5681	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
222963	chr8	143189351	143189650	+	0	NA	Intergenic	Intergenic	-23718	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
50429	chr12	47426671	47427500	+	0	NA	Intergenic	L1PA3|LINE|L1	12077	NR_149087	111082992		NR_149087		LINC02156	-	long intergenic non-protein coding RNA 2156	ncRNA
212761	chr7	129944451	129945000	+	0	NA	intron (NM_001202498, intron 1 of 6)	(AC)n|Simple_repeat|Simple_repeat	8235	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
8068	chr1	38990551	38992650	+	0	NA	exon (NM_024595, exon 1 of 5)	exon (NM_024595, exon 1 of 5)	324	NM_024595	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
75180	chr15	64727821	64729230	+	0	NA	Intergenic	Intergenic	-25244	NM_002537	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
55710	chr12	107992951	107993050	+	0	NA	Intergenic	L2c|LINE|L2	-89229	NR_037629	728739		NR_037629		LOC728739	-	programmed cell death 2 pseudogene	pseudo
215608	chr7	159112201	159112780	+	0	NA	intron (NR_130758, intron 2 of 12)	intron (NR_130758, intron 2 of 12)	-15286	NM_001308259	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
113378	chr19	8831571	8833900	+	0	NA	promoter-TSS (NM_144693)	promoter-TSS (NM_144693)	-431	NM_144693	148156		NM_144693	ENSG00000167785	ZNF558	-	zinc finger protein 558	protein-coding
74703	chr15	63043371	63044350	+	0	NA	intron (NM_001018020, intron 2 of 8)	CpG-8288	1113	NM_001018004	7168		NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA	tropomyosin 1	protein-coding
218683	chr8	58388701	58389000	+	0	NA	Intergenic	Intergenic	-22414	NM_001330535	137886		NM_001077619	ENSG00000215114	UBXN2B	p37	UBX domain protein 2B	protein-coding
132912	chr2	111416201	111416400	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	78861	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
199991	chr6	128112271	128112980	+	0	NA	intron (NM_001291981, intron 7 of 32).2	L3b|LINE|CR1	84760	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
204660	chr7	5431721	5432130	+	0	NA	Intergenic	Intergenic	-2998	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
237117	chrX	105034851	105034950	+	0	NA	intron (NM_017416, intron 2 of 10)	L1PA4|LINE|L1	185794	NM_001291277	56157		NM_031274	ENSG00000268629	TEX13A	-	testis expressed 13A	protein-coding
107119	chr18	35074351	35074830	+	0	NA	intron (NR_046177, intron 2 of 6)	intron (NR_046177, intron 2 of 6)	33177	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
99662	chr17	50719091	50720330	+	0	NA	5' UTR (NM_016424, exon 1 of 10)	5' UTR (NM_016424, exon 1 of 10)	107	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
104166	chr17	80410221	80411300	+	0	NA	intron (NR_029376, intron 1 of 1)	Harlequin-int|LTR|ERV1	-4407	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
132283	chr2	104938371	104938530	+	0	NA	intron (NR_110603, intron 2 of 2)	intron (NR_110603, intron 2 of 2)	-65855	NR_110373	102682016		NR_110373	ENSG00000229743	LINC01159	linc-Brn1b	long intergenic non-protein coding RNA 1159	ncRNA
21585	chr1	206490001	206490750	+	0	NA	intron (NM_001193322, intron 16 of 20)	intron (NM_001193322, intron 16 of 20)	15572	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
19322	chr1	173429601	173430380	+	0	NA	intron (NR_125960, intron 1 of 1)	intron (NR_125960, intron 1 of 1)	31372	NR_125960	101928673		NR_125960	ENSG00000203739	PRDX6-AS1	-	PRDX6 antisense RNA 1	ncRNA
211613	chr7	105890371	105890880	+	0	NA	Intergenic	Intergenic	-14026	NM_001385596	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
215958	chr8	8471271	8471430	+	0	NA	Intergenic	L1HS|LINE|L1	-84911	NR_163138	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
166823	chr3	122790971	122791330	+	0	NA	intron (NM_024610, intron 1 of 7)	MIRb|SINE|MIR	2681	NM_024610	79663		NM_024610	ENSG00000169087	HSPBAP1	PASS1	HSPB1 associated protein 1	protein-coding
69080	chr14	92037751	92038480	+	0	NA	intron (NM_004239, intron 1 of 20)	intron (NM_004239, intron 1 of 20)	1944	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
191102	chr6	3977971	3978630	+	0	NA	Intergenic	Intergenic	-43000	NM_003913	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
210831	chr7	100957571	100959080	+	0	NA	exon (NM_005960, exon 2 of 12)	exon (NM_005960, exon 2 of 12)	8791	NM_005960	4584		NM_005960	ENSG00000169894	MUC3A	MUC-3A|MUC3	mucin 3A, cell surface associated	protein-coding
134587	chr2	144266371	144266530	+	0	NA	intron (NM_001376309, intron 1 of 12)	MIRb|SINE|MIR	-17751	NR_148872	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
167967	chr3	136691451	136691550	+	0	NA	intron (NM_005862, intron 1 of 33)	AluJb|SINE|Alu	60878	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
204589	chr7	5298651	5298950	+	0	NA	intron (NM_153247, intron 7 of 10)	AluJo|SINE|Alu	15857	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
28293	chr10	46093771	46094330	+	0	NA	Intergenic	Intergenic	-15445	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
165174	chr3	72418371	72418830	+	0	NA	intron (NM_012234, intron 1 of 3)	L1ME1|LINE|L1	28023	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
26357	chr10	15850321	15850580	+	0	NA	intron (NM_001318330, intron 1 of 13)	MER11B|LTR|ERVK	10057	NM_024948	80013		NM_024948	ENSG00000148481	MINDY3	C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042	MINDY lysine 48 deubiquitinase 3	protein-coding
210516	chr7	100216001	100216300	+	0	NA	intron (NR_028038, intron 5 of 6)	MLT1G3|LTR|ERVL-MaLR	-3098	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
4836	chr1	23633801	23634000	+	0	NA	intron (NR_167910, intron 4 of 5)	AluY|SINE|Alu	6566	NR_167904	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
212490	chr7	128550771	128551250	+	0	NA	Intergenic	AluJb|SINE|Alu	74262	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
84969	chr16	31421421	31422350	+	0	NA	intron (NM_001318185, intron 23 of 29)	intron (NM_001318185, intron 23 of 29)	6475	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
202214	chr6	156794951	156795280	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-15384	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
109358	chr19	628151	628450	+	0	NA	intron (NM_005035, intron 3 of 20)	intron (NM_005035, intron 3 of 20)	5237	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
68573	chr14	89425971	89426330	+	0	NA	intron (NM_001085471, intron 1 of 6)	Tigger17a|DNA|TcMar-Tigger	8796	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
124713	chr2	3603551	3604230	+	0	NA	intron (NM_001255985, intron 2 of 7)	intron (NM_001255985, intron 2 of 7)	1984	NM_001255985	78989		NM_024027	ENSG00000118004	COLEC11	3MC2|CL-11|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
33722	chr10	121974471	121975410	+	0	NA	exon (NM_017615, exon 1 of 11)	exon (NM_017615, exon 1 of 11)	277	NM_001167865	54780		NM_017615	ENSG00000107672	NSMCE4A	C10orf86|NS4EA|NSE4A	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding
119747	chr19	41276771	41277630	+	0	NA	intron (NM_144732, intron 5 of 14)	intron (NM_144732, intron 5 of 14)	12119	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
141025	chr2	238175271	238175430	+	0	NA	intron (NM_030768, intron 9 of 11)	AluJr4|SINE|Alu	16380	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
82606	chr16	18901671	18902030	+	0	NA	intron (NM_015092, intron 1 of 62)	AluSx1|SINE|Alu	24558	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
232980	chr9	136977121	136977380	+	0	NA	promoter-TSS (NM_000954)	promoter-TSS (NM_000954)	-254	NM_000954	5730		NM_000954	ENSG00000107317	PTGDS	L-PGDS|LPGDS|PDS|PGD2|PGDS|PGDS2	prostaglandin D2 synthase	protein-coding
198606	chr6	107721401	107722030	+	0	NA	intron (NM_001286408, intron 4 of 6)	intron (NM_001286408, intron 4 of 6)	10435	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
228207	chr9	97847501	97848080	+	0	NA	intron (NR_147055, intron 1 of 10)	intron (NR_147055, intron 1 of 10)	5290	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
19174	chr1	171839621	171840100	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-1638	NM_001350205	26052		NM_015569	ENSG00000197959	DNM3	Dyna III	dynamin 3	protein-coding
152482	chr22	20849801	20850000	+	0	NA	intron (NM_001362863, intron 1 of 53)	L1MB8|LINE|L1	8911	NM_058004	5297		NM_002650	ENSG00000241973	PI4KA	GIDID2|PI4K-ALPHA|PIK4CA|PMGYCHA|SPG84|pi4K230	phosphatidylinositol 4-kinase alpha	protein-coding
89129	chr16	88508321	88508680	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	22553	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
48883	chr12	12485051	12485350	+	0	NA	intron (NM_030640, intron 5 of 6)	AluSx|SINE|Alu	77663	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
198956	chr6	110874041	110875100	+	0	NA	promoter-TSS (NM_001287214)	promoter-TSS (NM_001287214)	-214	NM_001634	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
194016	chr6	31815301	31816090	+	0	NA	promoter-TSS (NM_005527)	promoter-TSS (NM_005527)	152	NM_005345	3303		NM_005345	ENSG00000204389	HSPA1A	HEL-S-103|HSP70|HSP70-1|HSP70-1A|HSP70-2|HSP70.1|HSP70.2|HSP70I|HSP72|HSPA1	heat shock protein family A (Hsp70) member 1A	protein-coding
144646	chr20	36046551	36047050	+	0	NA	non-coding (NR_027451, exon 1 of 1)	non-coding (NR_027451, exon 1 of 1)	4160	NR_027451	647979		NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
197069	chr6	53735101	53735380	+	0	NA	Intergenic	L1MEd|LINE|L1	-59765	NM_018214	55227		NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
105720	chr18	2711101	2711330	+	0	NA	intron (NM_015295, intron 17 of 47)	AluJr|SINE|Alu	55489	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
139175	chr2	219206171	219207880	+	0	NA	exon (NM_001270999, exon 2 of 9)	exon (NM_001270999, exon 2 of 9)	241	NM_001270999	130617		NM_138802	ENSG00000158552	ZFAND2B	AIRAPL	zinc finger AN1-type containing 2B	protein-coding
13859	chr1	117672171	117672330	+	0	NA	Intergenic	Intergenic	66202	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
12339	chr1	101089521	101089780	+	0	NA	Intergenic	Intergenic	63804	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
161735	chr3	44323321	44323850	+	0	NA	intron (NM_001145030, intron 18 of 19)	intron (NM_001145030, intron 18 of 19)	-14534	NM_001029840	285343		NM_173826	ENSG00000179152	TCAIM	C3orf23|TOAG-1|TOAG1	T cell activation inhibitor, mitochondrial	protein-coding
213389	chr7	135976501	135977650	+	0	NA	exon (NM_145808, exon 1 of 4)	exon (NM_145808, exon 1 of 4)	284	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
144990	chr20	37392251	37392750	+	0	NA	intron (NM_198291, intron 5 of 13)	MIRc|SINE|MIR	46360	NM_198291	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
140358	chr2	232696601	232698230	+	0	NA	promoter-TSS (NM_001103148)	promoter-TSS (NM_001103148)	84	NR_103494	26058		NM_015575	ENSG00000204120	GIGYF2	GYF2|PARK11|PERQ2|PERQ3|TNRC15	GRB10 interacting GYF protein 2	protein-coding
81404	chr16	8565421	8566350	+	0	NA	intron (NR_110736, intron 2 of 3)	MER5B|DNA|hAT-Charlie	23953	NR_110736	283953		NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
151246	chr21	45294001	45294350	+	0	NA	non-coding (NR_026943, exon 3 of 3)	non-coding (NR_026943, exon 3 of 3)	6123	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
47054	chr12	545501	546200	+	0	NA	intron (NM_173593, intron 6 of 19)	intron (NM_173593, intron 6 of 19)	40636	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
146443	chr20	49673301	49673700	+	0	NA	intron (NM_004776, intron 1 of 8)	L1MC5a|LINE|L1	40378	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
124614	chr2	1134071	1134630	+	0	NA	intron (NM_018968, intron 4 of 16)	LTR12C|LTR|ERV1	-182958	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
67898	chr14	74562921	74563180	+	0	NA	intron (NM_000428, intron 3 of 35)	LTR16A1|LTR|ERVL	49187	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
97619	chr17	44140401	44140600	+	0	NA	Intergenic	AluJr|SINE|Alu	-1430	NM_001171251	78995		NM_024032	ENSG00000125319	HROB	C17orf53|MCM8IP	homologous recombination factor with OB-fold	protein-coding
21683	chr1	206714421	206715100	+	0	NA	intron (NM_032960, intron 1 of 9)	AluSx1|SINE|Alu	29855	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
2811	chr1	11014471	11014830	+	0	NA	intron (NM_007375, intron 2 of 5)	intron (NM_007375, intron 2 of 5)	1996	NM_007375	23435		NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding
187995	chr5	149531401	149532250	+	0	NA	intron (NM_001892, intron 2 of 9)	AluSx1|SINE|Alu	18540	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
102332	chr17	75411201	75411830	+	0	NA	Intergenic	L2c|LINE|L2	5446	NR_037449	100500841		NR_037449	ENSG00000264511	MIR3678	mir-3678	microRNA 3678	ncRNA
216938	chr8	22877601	22878000	+	0	NA	promoter-TSS (NR_125433)	promoter-TSS (NR_125433)	-172	NR_125433	101929237		NR_125433	ENSG00000248738	LOC101929237	-	uncharacterized LOC101929237	ncRNA
230154	chr9	127754851	127755280	+	0	NA	intron (NM_170600, intron 3 of 11)	CpG	217	NM_001142534	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
128331	chr2	54679901	54680100	+	0	NA	Intergenic	MER6A|DNA|TcMar-Tigger	-45012	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133531	chr2	120229401	120230200	+	0	NA	Intergenic	Intergenic	-6400	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
50737	chr12	48989171	48989330	+	0	NA	Intergenic	L2c|LINE|L2	-9097	NR_147179	105369758		NR_147178	ENSG00000257913	DDN-AS1	CAT1507	DDN and PRKAG1 antisense RNA 1	ncRNA
3644	chr1	16392851	16392950	+	0	NA	intron (NM_001271869, intron 2 of 3)	intron (NM_001271869, intron 2 of 3)	25658	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
48721	chr12	10701051	10702350	+	0	NA	intron (NM_003651, intron 8 of 9)	intron (NM_003651, intron 8 of 9)	21623	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
192167	chr6	17599971	17601780	+	0	NA	exon (NM_016255, exon 1 of 5)	exon (NM_016255, exon 1 of 5)	573	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
104578	chr17	81383371	81384130	+	0	NA	intron (NR_164137, intron 1 of 3)	intron (NR_164137, intron 1 of 3)	1375	NR_164138	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
133816	chr2	127828501	127828880	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-17503	NM_001006622	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
67191	chr14	68863071	68863750	+	0	NA	Intergenic	Intergenic	-67167	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
234762	chrX	23756021	23756450	+	0	NA	Intergenic	MADE1|DNA|TcMar-Mariner	-12959	NM_001033583	23597		NM_012332	ENSG00000123130	ACOT9	ACATE2|CGI-16|MT-ACT48|MTACT48	acyl-CoA thioesterase 9	protein-coding
122260	chr19	49051121	49051380	+	0	NA	Intergenic	AluSz|SINE|Alu	-2139	NM_033183	94115		NM_033183	ENSG00000213030	CGB8	-	chorionic gonadotropin subunit beta 8	protein-coding
118051	chr19	34261951	34262650	+	0	NA	intron (NM_014686, intron 1 of 13)	AluSx|SINE|Alu	7746	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
128004	chr2	47020471	47020630	+	0	NA	intron (NM_020458, intron 11 of 19)	intron (NM_020458, intron 11 of 19)	-78695	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
206876	chr7	37645221	37645880	+	0	NA	Intergenic	L1M7|LINE|L1	-38216	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
114911	chr19	13938551	13939050	+	0	NA	promoter-TSS (NM_001370095)	promoter-TSS (NM_001370095)	-324	NM_024825	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
208550	chr7	70776671	70777030	+	0	NA	intron (NM_015570, intron 13 of 18)	intron (NM_015570, intron 13 of 18)	-355294	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
154991	chr22	37306571	37307500	+	0	NA	intron (NM_001318024, intron 8 of 12)	MLT1K|LTR|ERVL-MaLR	24527	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
47542	chr12	4281251	4282230	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-5556	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
189441	chr5	172958471	172959830	+	0	NA	promoter-TSS (NM_016093)	promoter-TSS (NM_016093)	218	NR_026682	100268168		NR_026682	ENSG00000204758	RPL26L1-AS1	-	RPL26L1 antisense RNA 1	ncRNA
34105	chr10	125982371	125982600	+	0	NA	intron (NM_145235, intron 2 of 10)	intron (NM_145235, intron 2 of 10)	-9212	NR_102707	101410540		NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
75945	chr15	70270221	70270480	+	0	NA	Intergenic	Intergenic	-172433	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
224630	chr9	20562151	20562680	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	59523	NM_001286691	4300		NM_004529	ENSG00000171843	MLLT3	AF9|YEATS3	MLLT3 super elongation complex subunit	protein-coding
137255	chr2	192193271	192193880	+	0	NA	intron (NM_001305145, intron 1 of 3)	intron (NM_001305145, intron 1 of 3)	1358	NM_016192	23671		NM_016192	ENSG00000144339	TMEFF2	CT120.2|HPP1|TENB2|TPEF|TR|TR-2	transmembrane protein with EGF like and two follistatin like domains 2	protein-coding
33214	chr10	114030971	114031330	+	0	NA	Intergenic	MIRb|SINE|MIR	-12716	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
193935	chr6	31650971	31654200	+	0	NA	promoter-TSS (NM_001098534).7	promoter-TSS (NM_001098534).7	76	NM_080702	7917		NM_004639	ENSG00000204463	BAG6	BAG-6|BAT3|D6S52E|G3	BAG cochaperone 6	protein-coding
4423	chr1	21259501	21259700	+	0	NA	intron (NM_001397, intron 5 of 18)	OldhAT1|DNA|hAT-Ac	20015	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
124136	chr19	55691271	55691730	+	0	NA	intron (NM_001321263, intron 6 of 10)	intron (NM_001321263, intron 6 of 10)	14875	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
150670	chr21	43443451	43443550	+	0	NA	Intergenic	Intergenic	-3101	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
73424	chr15	43105471	43106630	+	0	NA	promoter-TSS (NM_174916)	promoter-TSS (NM_174916)	-12	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
218732	chr8	58788671	58788830	+	0	NA	Intergenic	AluSq|SINE|Alu	-128897	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
165594	chr3	101642871	101643250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-33370	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
213083	chr7	131096351	131097300	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	10205	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
88512	chr16	85312551	85312650	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-6275	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
26319	chr10	15096471	15098300	+	0	NA	promoter-TSS (NM_183005)	promoter-TSS (NM_183005)	30	NM_001097590	10557		NM_006414	ENSG00000152464	RPP38	-	ribonuclease P/MRP subunit p38	protein-coding
91025	chr17	2812871	2813130	+	0	NA	intron (NM_001100398, intron 2 of 23)	AluSq2|SINE|Alu	16562	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
40668	chr11	64751801	64752350	+	0	NA	intron (NM_001164716, intron 11 of 17)	intron (NM_001164716, intron 11 of 17)	-6619	NM_153819	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
89097	chr16	88484551	88485280	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	15997	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
88388	chr16	84614471	84615300	+	0	NA	intron (NM_021149, intron 2 of 3)	MIR|SINE|MIR	3193	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
69637	chr14	97724121	97725130	+	0	NA	Intergenic	Intergenic	-37967	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
121307	chr19	46741751	46743100	+	0	NA	intron (NM_001039877, intron 1 of 17)	intron (NM_001039877, intron 1 of 17)	-3632	NM_024301	79147		NM_024301	ENSG00000181027	FKRP	FKTR|LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
173470	chr4	8917951	8918330	+	0	NA	Intergenic	Intergenic	-46301	NM_001306142	3166		NM_018942	ENSG00000215612	HMX1	H6|NKX5-3	H6 family homeobox 1	protein-coding
34498	chr10	132550321	132550580	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	12663	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
161869	chr3	45887571	45887930	+	0	NA	intron (NM_006641, intron 1 of 1)	intron (NM_006641, intron 1 of 1)	1207	NM_006641	10803		NM_006641	ENSG00000173585	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	C-C motif chemokine receptor 9	protein-coding
4880	chr1	23782121	23782830	+	0	NA	intron (NM_020362, intron 3 of 5)	FRAM|SINE|Alu	4057	NM_020362	57095		NM_020362	ENSG00000057757	PITHD1	C1orf128|HT014|TXNL1CL	PITH domain containing 1	protein-coding
140671	chr2	234026801	234027480	+	0	NA	Intergenic	Intergenic	-23562	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
216074	chr8	10711021	10711350	+	0	NA	Intergenic	Intergenic	-18106	NR_146188	102723313		NR_146188	ENSG00000248896	LOC102723313	-	uncharacterized LOC102723313	ncRNA
227881	chr9	93898201	93898600	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	56955	NM_021570	56033		NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
27998	chr10	43137721	43139140	+	0	NA	promoter-TSS (NM_018590)	promoter-TSS (NM_018590)	-15	NR_135077	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
80505	chr16	2740671	2741030	+	0	NA	intron (NR_027275, intron 3 of 5)	intron (NR_027275, intron 3 of 5)	3947	NR_027274	100128788		NR_027274	ENSG00000205913	SRRM2-AS1	-	SRRM2 antisense RNA 1	ncRNA
177514	chr4	118281921	118282250	+	0	NA	exon (NM_003619, exon 13 of 13)	exon (NM_003619, exon 13 of 13)	2895	NR_002963	677809		NR_002963	ENSG00000275994	SNORA24	ACA24|SNORA24A	small nucleolar RNA, H/ACA box 24	snoRNA
217423	chr8	28399701	28400230	+	0	NA	Intergenic	Intergenic	-13505	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
237471	chrX	119781901	119782300	+	0	NA	Intergenic	AluSx3|SINE|Alu	5384	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
136341	chr2	175329071	175329430	+	0	NA	Intergenic	Intergenic	-147540	NM_001002258	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
116277	chr19	17720801	17721200	+	0	NA	exon (NM_018174, exon 2 of 7)	exon (NM_018174, exon 2 of 7)	844	NM_001308363	55201		NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule associated protein 1S	protein-coding
221231	chr8	121710951	121711130	+	0	NA	Intergenic	Intergenic	-69600	NM_005328	3037		NM_005328	ENSG00000170961	HAS2	-	hyaluronan synthase 2	protein-coding
54293	chr12	89348771	89349550	+	0	NA	3' UTR (NM_001946, exon 3 of 3)	3' UTR (NM_001946, exon 3 of 3)	3341	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
153299	chr22	24179601	24180180	+	0	NA	Intergenic	Intergenic	-1597	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
113219	chr19	8470801	8471000	+	0	NA	intron (NM_031203, intron 10 of 16)	intron (NM_031203, intron 10 of 16)	25925	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
147972	chr20	62984171	62984530	+	0	NA	Intergenic	Intergenic	22614	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
63001	chr13	112511071	112511430	+	0	NA	intron (NM_001286278, intron 17 of 20)	intron (NM_001286278, intron 17 of 20)	76903	NM_006322	10426		NM_006322	ENSG00000126216	TUBGCP3	104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex component 3	protein-coding
92940	chr17	16989141	16989830	+	0	NA	intron (NR_146886, intron 2 of 2)	intron (NR_146886, intron 2 of 2)	1156	NR_146886	105371562		NR_146886	ENSG00000230969	LINC02090	-	long intergenic non-protein coding RNA 2090	ncRNA
2160	chr1	8423101	8424100	+	0	NA	5' UTR (NM_001042682, exon 1 of 13)	5' UTR (NM_001042682, exon 1 of 13)	232	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
197363	chr6	73464551	73465550	+	0	NA	intron (NM_133645, intron 1 of 12)	intron (NM_133645, intron 1 of 12)	3313	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
202933	chr6	160463671	160463930	+	0	NA	Intergenic	Intergenic	47324	NR_028092	80350		NM_024492	ENSG00000290613	LPAL2	APOA2|APOAL|APOARGC|apo(a)rg-C	lipoprotein(a) like 2 (pseudogene)	pseudo
163848	chr3	52483071	52483230	+	0	NA	intron (NM_007184, intron 13 of 20)	intron (NM_007184, intron 13 of 20)	-12188	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
109671	chr19	1023651	1024330	+	0	NA	Intergenic	AluJo|SINE|Alu	2468	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
65553	chr14	51932651	51932750	+	0	NA	intron (NM_053064, intron 2 of 3)	L2|LINE|L2	-14129	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
40377	chr11	63995701	63996830	+	0	NA	intron (NR_003089, intron 3 of 5)	intron (NR_003089, intron 3 of 5)	10412	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
16394	chr1	154417051	154417480	+	0	NA	intron (NM_001206866, intron 1 of 6)	MIR3|SINE|MIR	-10701	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
180244	chr5	1635001	1635580	+	0	NA	Intergenic	Intergenic	-1285	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
136847	chr2	185847121	185847380	+	0	NA	Intergenic	L1PA2|LINE|L1	-47099	NR_144454	107985781		NR_144453	ENSG00000231646	FSIP2-AS1	-	FSIP2 antisense RNA 1	ncRNA
192239	chr6	19837221	19837480	+	0	NA	promoter-TSS (NM_001546)	promoter-TSS (NM_001546)	-20	NM_001546	3400		NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4	protein-coding
206849	chr7	37406451	37406550	+	0	NA	intron (NM_001206480, intron 1 of 21)	AluY|SINE|Alu	42452	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
22827	chr1	225343671	225343930	+	0	NA	intron (NM_001367479, intron 69 of 85)	intron (NM_001367479, intron 69 of 85)	84238	NM_002296	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
115625	chr19	16088501	16088900	+	0	NA	intron (NM_001367837, intron 4 of 7)	intron (NM_001367837, intron 4 of 7)	11684	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
169893	chr3	177595671	177596230	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	154029	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
30464	chr10	79146471	79147050	+	0	NA	intron (NM_020338, intron 3 of 24)	intron (NM_020338, intron 3 of 24)	77794	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
121665	chr19	47496821	47497630	+	0	NA	intron (NR_038457, intron 1 of 8)	intron (NR_038457, intron 1 of 8)	12943	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
128468	chr2	56183671	56184150	+	0	NA	promoter-TSS (NM_001348516)	promoter-TSS (NM_001348516)	-80	NM_001080433	114800		NM_001080433	ENSG00000055813	CCDC85A	-	coiled-coil domain containing 85A	protein-coding
83812	chr16	28833151	28833550	+	0	NA	exon (NM_007245, exon 14 of 22)	exon (NM_007245, exon 14 of 22)	10302	NM_007245	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
84662	chr16	30746051	30746350	+	0	NA	Intergenic	L1PA8|LINE|L1	-2099	NM_001172432	5261		NM_000294	ENSG00000156873	PHKG2	GSD9C	phosphorylase kinase catalytic subunit gamma 2	protein-coding
175923	chr4	80215371	80215730	+	0	NA	Intergenic	Intergenic	18047	NM_001099403	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
187482	chr5	142151621	142152100	+	0	NA	3' UTR (NM_030571, exon 8 of 8)	3' UTR (NM_030571, exon 8 of 8)	43081	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
40179	chr11	62895101	62895300	+	0	NA	Intergenic	AluSx3|SINE|Alu	13501	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
103152	chr17	77418621	77418880	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	13673	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
98184	chr17	46105451	46106400	+	0	NA	intron (NM_015443, intron 2 of 14).2	(CA)n|Simple_repeat|Simple_repeat	86857	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
172714	chr4	2799771	2799930	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	6765	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
196921	chr6	52391721	52392250	+	0	NA	intron (NM_133367, intron 1 of 1)	intron (NM_133367, intron 1 of 1)	-28357	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
162383	chr3	48061421	48061980	+	0	NA	intron (NM_001384729, intron 1 of 20)	SVA_C|Retroposon|SVA	27148	NM_001384861	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
14546	chr1	144878471	144878980	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	160554	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
85524	chr16	50802621	50802880	+	0	NA	TTS (NM_001378753)	TTS (NM_001378753)	-3922	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
4350	chr1	20657901	20658100	+	0	NA	intron (NM_005216, intron 2 of 10)	MER20|DNA|hAT-Charlie	3369	NM_005216	1650		NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein-coding
15579	chr1	150571011	150571350	+	0	NA	intron (NR_104133, intron 2 of 3)	intron (NR_104133, intron 2 of 3)	3372	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
11571	chr1	91521071	91521430	+	0	NA	intron (NM_001134420, intron 11 of 11)	intron (NM_001134420, intron 11 of 11)	20142	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
229842	chr9	125830801	125831150	+	0	NA	intron (NR_024122, intron 2 of 7)	L1MC5|LINE|L1	82792	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
151279	chr21	45479671	45480350	+	0	NA	intron (NM_001379500, intron 10 of 41)	intron (NM_001379500, intron 10 of 41)	1744	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
62715	chr13	104773751	104773850	+	0	NA	Intergenic	LTR41|LTR|ERVL	-692067	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
48130	chr12	7901221	7901780	+	0	NA	Intergenic	AluSz|SINE|Alu	-10304	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
99969	chr17	57547751	57548050	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	-24303	NR_110808	101927557		NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA
59516	chr13	27130801	27131730	+	0	NA	intron (NR_046547, intron 1 of 2)	intron (NR_046547, intron 1 of 2)	5732	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
160085	chr3	18787551	18787730	+	0	NA	Intergenic	Intergenic	-342048	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
62674	chr13	102605351	102605450	+	0	NA	intron (NR_160411, intron 2 of 28)	MLT1F2|LTR|ERVL-MaLR	8414	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
44694	chr11	111454671	111455050	+	0	NA	Intergenic	Intergenic	-36674	NR_046085	100132078		NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
33655	chr10	119737121	119737380	+	0	NA	intron (NM_001243195, intron 1 of 4)	intron (NM_001243195, intron 1 of 4)	11200	NM_014937	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
71487	chr14	105984771	105985230	+	0	NA	Intergenic	LTR32|LTR|ERVL	-12731	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
172613	chr4	2509471	2509900	+	0	NA	intron (NM_001185009, intron 5 of 8)	intron (NM_001185009, intron 5 of 8)	-25690	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
144679	chr20	36433401	36433800	+	0	NA	intron (NM_001365621, intron 3 of 12)	L3|LINE|CR1	-27868	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
150124	chr21	37519351	37519650	+	0	NA	3' UTR (NM_001347722, exon 12 of 12)	3' UTR (NM_001347722, exon 12 of 12)	99201	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
183022	chr5	73122821	73123080	+	0	NA	intron (NM_173490, intron 1 of 3)	intron (NM_173490, intron 1 of 3)	2375	NM_001161342	134285		NM_173490	ENSG00000157111	TMEM171	PRP2	transmembrane protein 171	protein-coding
127030	chr2	37149451	37150350	+	0	NA	intron (NM_002759, intron 1 of 16)	Tigger6a|DNA|TcMar-Tigger	-2078	NM_001135652	5610		NM_002759	ENSG00000055332	EIF2AK2	DYT33|EIF2AK1|LEUDEN|PKR|PPP1R83|PRKR	eukaryotic translation initiation factor 2 alpha kinase 2	protein-coding
112915	chr19	7649401	7650030	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	12605	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
152995	chr22	23174851	23175500	+	0	NA	Intergenic	AluY|SINE|Alu	-5334	NM_004327	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
117350	chr19	19538901	19539900	+	0	NA	intron (NM_153221, intron 1 of 7)	AluSx|SINE|Alu	1135	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
195296	chr6	36537951	36538250	+	0	NA	intron (NM_007271, intron 2 of 13)	AluY|SINE|Alu	9379	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
189712	chr5	176524771	176525330	+	0	NA	Intergenic	AluSx|SINE|Alu	12352	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
171490	chr3	196568021	196569750	+	0	NA	promoter-TSS (NM_001345917)	promoter-TSS (NM_001345917)	-211	NM_001345913	348793		NM_182627	ENSG00000185798	WDR53	-	WD repeat domain 53	protein-coding
45221	chr11	117904521	117904880	+	0	NA	intron (NM_001206789, intron 9 of 11)	MER90a|LTR|ERV1	24702	NM_001206789	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
41229	chr11	65715421	65715950	+	0	NA	intron (NM_182709, intron 8 of 12)	AluY|SINE|Alu	3433	NM_006388	10524		NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|NEDFASB|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding
27064	chr10	27151551	27151950	+	0	NA	intron (NM_001253866, intron 1 of 17)	AluY|SINE|Alu	2634	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
225697	chr9	36572301	36573170	+	0	NA	promoter-TSS (NM_001256689)	promoter-TSS (NM_001256689)	-127	NR_046337	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
38447	chr11	45332171	45332730	+	0	NA	Intergenic	MIR3|SINE|MIR	-22921	NR_120557	101928812		NR_120557	ENSG00000254427	LINC02696	-	long intergenic non-protein coding RNA 2696	ncRNA
25344	chr10	6272001	6272200	+	0	NA	Intergenic	Intergenic	-54444	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
171761	chr3	198191571	198191750	+	0	NA	intron (NR_146164, intron 10 of 17)	intron (NR_146164, intron 10 of 17)	38454	NR_146164	728262		NM_001145248	ENSG00000290937	FAM157A	GTF2IP18	family with sequence similarity 157 member A	ncRNA
23973	chr1	235173301	235173500	+	0	NA	intron (NM_016374, intron 22 of 23)	intron (NM_016374, intron 22 of 23)	-12150	NR_144491	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
61476	chr13	52407521	52407880	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1528	NM_018676	55901		NM_018676	ENSG00000136114	THSD1	ANIB12|LMPHM13|TMTSP|UNQ3010	thrombospondin type 1 domain containing 1	protein-coding
26117	chr10	13453921	13454180	+	0	NA	intron (NM_001378150, intron 6 of 8)	intron (NM_001378150, intron 6 of 8)	49543	NM_001100912	222389		NM_152751	ENSG00000165626	BEND7	C10orf30	BEN domain containing 7	protein-coding
64441	chr14	24211201	24211730	+	0	NA	exon (NM_014169, exon 3 of 6).2	exon (NM_014169, exon 3 of 6).2	2023	NM_014169	29082		NM_014169	ENSG00000254505	CHMP4A	C14orf123|CHMP4|CHMP4B|HSPC134|SHAX2|SNF7|SNF7-1|VPS32-1|VPS32A|hSnf7-1	charged multivesicular body protein 4A	protein-coding
227387	chr9	89518151	89518450	+	0	NA	Intergenic	Intergenic	-20187	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
116026	chr19	17171771	17171930	+	0	NA	intron (NM_004145, intron 11 of 39)	AluJr|SINE|Alu	-43507	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
121801	chr19	47912571	47913010	+	0	NA	promoter-TSS (NR_024217)	promoter-TSS (NR_024217)	-261	NR_024220	100170225		NR_024220		SNAR-C1	-	small NF90 (ILF3) associated RNA C1	snRNA
111854	chr19	4594351	4594450	+	0	NA	Intergenic	LTR37B|LTR|ERV1	-34716	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
193502	chr6	30570671	30572480	+	0	NA	intron (NM_001090, intron 1 of 23).3	CpG	133	NM_001025091	23		NM_001090	ENSG00000204574	ABCF1	ABC27|ABC50	ATP binding cassette subfamily F member 1	protein-coding
52650	chr12	56293451	56293750	+	0	NA	intron (NM_004077, intron 1 of 10)	AluSx|SINE|Alu	6730	NM_004077	1431		NM_004077	ENSG00000062485	CS	-	citrate synthase	protein-coding
87489	chr16	71795221	71796180	+	0	NA	intron (NM_001128, intron 1 of 22)	intron (NM_001128, intron 1 of 22)	13134	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
31565	chr10	97318051	97319700	+	0	NA	promoter-TSS (NM_005479)	promoter-TSS (NM_005479)	-396	NM_005479	10023		NM_005479	ENSG00000165879	FRAT1	-	FRAT regulator of WNT signaling pathway 1	protein-coding
63873	chr14	21735721	21736750	+	0	NA	Intergenic	Intergenic	-65218	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
29547	chr10	71289701	71289900	+	0	NA	intron (NM_170744, intron 8 of 16)	intron (NM_170744, intron 8 of 16)	-29453	NR_033413	55315		NM_018344	ENSG00000198246	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 member 3	protein-coding
20658	chr1	200146251	200146350	+	0	NA	intron (NM_205860, intron 7 of 7)	intron (NM_205860, intron 7 of 7)	103475	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
227014	chr9	83816071	83816230	+	0	NA	intron (NM_025211, intron 2 of 12)	AluSq4|SINE|Alu	1619	NM_025211	80318		NM_025211	ENSG00000165113	GKAP1	FKSG21|GKAP42	G kinase anchoring protein 1	protein-coding
150999	chr21	44369751	44370050	+	0	NA	intron (NM_001320350, intron 5 of 32)	CpG	16299	NM_001320350	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
110919	chr19	2777751	2777930	+	0	NA	intron (NM_003021, intron 1 of 11)	AluSx1|SINE|Alu	5433	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
195268	chr6	36449871	36450850	+	0	NA	intron (NR_104481, intron 1 of 3)	AluSx|SINE|Alu	7360	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
37841	chr11	33376051	33376700	+	0	NA	5' UTR (NM_012194, exon 1 of 21)	5' UTR (NM_012194, exon 1 of 21)	267	NM_012194	25758		NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549 like	protein-coding
104986	chr17	82007121	82007380	+	0	NA	intron (NR_045351, intron 6 of 14)	intron (NR_045351, intron 6 of 14)	15628	NM_001271006	201254		NM_144998	ENSG00000169689	CENPX	CENP-X|D9|FAAP10|MHF2|STRA13	centromere protein X	protein-coding
145937	chr20	46028271	46028630	+	0	NA	promoter-TSS (NM_020708)	promoter-TSS (NM_020708)	-765	NM_020708	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
70762	chr14	103425851	103426450	+	0	NA	intron (NM_002376, intron 2 of 15)	Charlie1b|DNA|hAT-Charlie	40735	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
16024	chr1	152182551	152182650	+	0	NA	Intergenic	UCON43|Unknown|Unknown	-23372	NM_001122965	126638		NM_152364	ENSG00000215853	RPTN	-	repetin	protein-coding
43583	chr11	83089121	83089380	+	0	NA	Intergenic	Intergenic	17184	NR_038903	100506233		NR_038903		RAB30-DT	RAB30-AS1	RAB30 divergent transcript	ncRNA
46807	chr11	130310251	130310550	+	0	NA	intron (NR_163264, intron 1 of 10)	7SLRNA|srpRNA|srpRNA	4312	NM_001301099	29068		NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
86079	chr16	57622371	57622530	+	0	NA	intron (NM_001370439, intron 1 of 13)	intron (NM_001370439, intron 1 of 13)	2404	NM_001370437	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
76506	chr15	74955221	74955480	+	0	NA	3' UTR (NM_017793, exon 1 of 1)	3' UTR (NM_017793, exon 1 of 1)	1422	NM_017793	54913		NM_017793	ENSG00000178718	RPP25	-	ribonuclease P and MRP subunit p25	protein-coding
106824	chr18	24001521	24002030	+	0	NA	intron (NR_110796, intron 3 of 5)	intron (NR_110796, intron 3 of 5)	8888	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
7295	chr1	32396671	32396830	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-2309	NM_001143889	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
31590	chr10	97353151	97353450	+	0	NA	Intergenic	AluSx|SINE|Alu	-18571	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
37148	chr11	13549801	13550000	+	0	NA	Intergenic	L1PBa|LINE|L1	-53725	NM_001316352	5741		NM_000315	ENSG00000152266	PTH	FIH1|PTH1	parathyroid hormone	protein-coding
183944	chr5	87781121	87781500	+	0	NA	Intergenic	Intergenic	119268	NR_149089	111082994		NR_149089	ENSG00000249362	LINC02488	CTD-2316B1	long intergenic non-protein coding RNA 2488	ncRNA
101056	chr17	64830171	64830530	+	0	NA	intron (NR_024386, intron 1 of 10)	intron (NR_024386, intron 1 of 10)	6834	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
12137	chr1	100074321	100074580	+	0	NA	intron (NM_033055, intron 8 of 11)	AluSq|SINE|Alu	36355	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
167187	chr3	128152701	128154100	+	0	NA	promoter-TSS (NM_021937)	promoter-TSS (NM_021937)	-81	NM_021937	60678		NM_021937	ENSG00000132394	EEFSEC	EFSEC|SELB	eukaryotic elongation factor, selenocysteine-tRNA specific	protein-coding
105173	chr17	82271551	82271850	+	0	NA	intron (NM_139062, intron 1 of 9)	intron (NM_139062, intron 1 of 9)	2000	NM_001363749	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
128837	chr2	63590751	63591430	+	0	NA	intron (NM_001199112, intron 1 of 7)	intron (NM_001199112, intron 1 of 7)	1939	NM_001199111	4190		NM_005917	ENSG00000014641	MDH1	DEE88|EIEE88|HEL-S-32|KAR|MDH-s|MDHA|MGC:1375|MOR2	malate dehydrogenase 1	protein-coding
119592	chr19	40732101	40732300	+	0	NA	intron (NM_025194, intron 3 of 6)	AluSz|SINE|Alu	15088	NM_025194	80271		NM_025194	ENSG00000086544	ITPKC	IP3-3KC|IP3KC	inositol-trisphosphate 3-kinase C	protein-coding
159512	chr3	14405821	14406400	+	0	NA	intron (NR_103507, intron 1 of 13)	intron (NR_103507, intron 1 of 13)	3504	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
128496	chr2	59025351	59025450	+	0	NA	intron (NR_033873, intron 11 of 13)	intron (NR_033873, intron 11 of 13)	-192308	NR_110219	101927285		NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
190235	chr5	178384251	178384350	+	0	NA	intron (NM_173465, intron 2 of 28)	intron (NM_173465, intron 2 of 28)	-151478	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
210012	chr7	93165401	93165800	+	0	NA	Intergenic	MER57E1|LTR|ERV1	-17215	NM_001303498	219285		NM_152703	ENSG00000177409	SAMD9L	ATXPC|C7DELq|C7orf6|DEL7q|DRIF2|M7MLS1|MLSM7|SCA49|UEF1	sterile alpha motif domain containing 9 like	protein-coding
18559	chr1	162613551	162613930	+	0	NA	Intergenic	Intergenic	-17123	NM_001354983	4921		NM_006182	ENSG00000162733	DDR2	MIG20a|NTRKR3|TKT|TYRO10|WRCN	discoidin domain receptor tyrosine kinase 2	protein-coding
56146	chr12	111325081	111327050	+	0	NA	intron (NM_015267, intron 18 of 21)	intron (NM_015267, intron 18 of 21)	21923	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
11620	chr1	91716101	91716300	+	0	NA	intron (NR_036634, intron 13 of 17)	intron (NR_036634, intron 13 of 17)	169951	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
136525	chr2	177257451	177258400	+	0	NA	intron (NM_001313902, intron 1 of 3)	MER1B|DNA|hAT-Charlie	-1915	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
89327	chr16	88739651	88740150	+	0	NA	non-coding (NR_103774, exon 3 of 3)	non-coding (NR_103774, exon 3 of 3)	-2867	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
91395	chr17	4593351	4593850	+	0	NA	intron (NM_001114974, intron 3 of 7)	intron (NM_001114974, intron 3 of 7)	9071	NM_001375361	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
77920	chr15	89312501	89312900	+	0	NA	intron (NM_018193, intron 33 of 36)	AluSz6|SINE|Alu	14110	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
24210	chr1	236101751	236102450	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-37010	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
5435	chr1	25569721	25570130	+	0	NA	Intergenic	Intergenic	26319	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
62927	chr13	111179701	111180500	+	0	NA	intron (NM_001354057, intron 3 of 18)	intron (NM_001354057, intron 3 of 18)	-6694	NM_001113513	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
181126	chr5	37413021	37413350	+	0	NA	intron (NM_018034, intron 5 of 17)	intron (NM_018034, intron 5 of 17)	33867	NM_001345999	55100		NM_018034	ENSG00000082068	WDR70	-	WD repeat domain 70	protein-coding
127217	chr2	38596371	38596980	+	0	NA	intron (NM_138394, intron 1 of 12)	intron (NM_138394, intron 1 of 12)	6253	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
91360	chr17	4535351	4535450	+	0	NA	intron (NM_001124758, intron 9 of 12)	intron (NM_001124758, intron 9 of 12)	19984	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
220700	chr8	101644271	101644700	+	0	NA	intron (NM_024915, intron 13 of 15)	intron (NM_024915, intron 13 of 15)	146484	NM_032041	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
197110	chr6	57171871	57174200	+	0	NA	promoter-TSS (NR_110742)	promoter-TSS (NR_110742)	709	NM_004282	9532		NM_004282	ENSG00000112208	BAG2	BAG-2|dJ417I1.2	BAG cochaperone 2	protein-coding
5762	chr1	26484571	26484930	+	0	NA	Intergenic	AluY|SINE|Alu	12310	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
222183	chr8	133031721	133031980	+	0	NA	intron (NM_003235, intron 41 of 47)	L2b|LINE|L2	14731	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
39686	chr11	61729501	61729700	+	0	NA	intron (NM_006133, intron 8 of 19)	MIRb|SINE|MIR	-23036	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
162089	chr3	46894101	46894380	+	0	NA	intron (NM_001184744, intron 3 of 14)	intron (NM_001184744, intron 3 of 14)	11991	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
235342	chrX	44055601	44055800	+	0	NA	Intergenic	MER63B|DNA|hAT-Blackjack	-82310	NM_000266	4693		NM_000266	ENSG00000124479	NDP	EVR2|FEVR|ND	norrin cystine knot growth factor NDP	protein-coding
211014	chr7	102363321	102365030	+	0	NA	non-coding (NR_038967, exon 1 of 9)	non-coding (NR_038967, exon 1 of 9)	292	NM_001242713								
83958	chr16	29151971	29152130	+	0	NA	Intergenic	Intergenic	77208	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
197228	chr6	68634401	68635280	+	0	NA	promoter-TSS (NM_001704)	promoter-TSS (NM_001704)	-442	NM_001704	577		NM_001704	ENSG00000135298	ADGRB3	BAI3	adhesion G protein-coupled receptor B3	protein-coding
70566	chr14	102593201	102593900	+	0	NA	intron (NM_015156, intron 2 of 11)	CpG-7681	901	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
40867	chr11	65094501	65094700	+	0	NA	Intergenic	Intergenic	-1614	NM_013265	738		NM_013265	ENSG00000149823	VPS51	ANG2|ANG3|C11orf2|C11orf3|FFR|PCH13	VPS51 subunit of GARP complex	protein-coding
160553	chr3	30682651	30682950	+	0	NA	intron (NM_001024847, intron 6 of 7)	intron (NM_001024847, intron 6 of 7)	76199	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
144697	chr20	36463851	36464300	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	2280	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
161656	chr3	43325871	43326030	+	0	NA	intron (NM_017719, intron 3 of 6)	intron (NM_017719, intron 3 of 6)	26012	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
225679	chr9	36477421	36477930	+	0	NA	Intergenic	AluY|SINE|Alu	-76477	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
146833	chr20	51410701	51411630	+	0	NA	intron (NM_012340, intron 9 of 10)	MIR|SINE|MIR	41812	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
123309	chr19	53572921	53573180	+	0	NA	intron (NM_001317116, intron 4 of 4)	AluSz|SINE|Alu	17743	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
138509	chr2	207176351	207176450	+	0	NA	Intergenic	Intergenic	-9154	NM_001270943	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
208507	chr7	69603871	69604500	+	0	NA	intron (NM_001127232, intron 1 of 4)	intron (NM_001127232, intron 1 of 4)	5710	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
38826	chr11	47306621	47306880	+	0	NA	intron (NR_164842, intron 23 of 33)	L1M2a|LINE|L1	-34640	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
163867	chr3	52497071	52497430	+	0	NA	intron (NM_015136, intron 1 of 68)	AluSx1|SINE|Alu	1912	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
69131	chr14	92537321	92537580	+	0	NA	intron (NM_024832, intron 1 of 9)	L1ME4b|LINE|L1	23669	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
35803	chr11	2203371	2203530	+	0	NA	Intergenic	Intergenic	30387	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
232719	chr9	136599201	136599400	+	0	NA	Intergenic	Intergenic	17881	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
59224	chr13	23546221	23546300	+	0	NA	Intergenic	AluY|SINE|Alu	-24110	NM_001204459	55504		NM_018647	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	TNF receptor superfamily member 19	protein-coding
102717	chr17	76186401	76186800	+	0	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	-45355	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
21644	chr1	206638501	206638900	+	0	NA	intron (NM_001004023, intron 3 of 3)	Tigger19a|DNA|TcMar-Tigger	3164	NM_001004023	8444		NM_003582	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual specificity tyrosine phosphorylation regulated kinase 3	protein-coding
11737	chr1	91941651	91942230	+	0	NA	Intergenic	AluSz|SINE|Alu	-7431	NM_001242810	676		NM_001726	ENSG00000137948	BRDT	BRD6|CT9|SPGF21	bromodomain testis associated	protein-coding
153026	chr22	23237671	23238630	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-24617	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
218084	chr8	38937901	38939350	+	0	NA	intron (NM_021623, intron 3 of 11)	intron (NM_021623, intron 3 of 11)	-35603	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
130181	chr2	83340301	83340500	+	0	NA	Intergenic	L1MC1|LINE|L1	-182414	NR_146482	101928031		NR_146482	ENSG00000232548	LINC01809	-	long intergenic non-protein coding RNA 1809	ncRNA
71039	chr14	104784171	104784780	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	9126	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
161906	chr3	45978421	45978980	+	0	NA	intron (NM_024513, intron 4 of 17)	intron (NM_024513, intron 4 of 17)	17124	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
75031	chr15	64110221	64111630	+	0	NA	intron (NM_001242933, intron 1 of 14)	intron (NM_001242933, intron 1 of 14)	14943	NM_003099	6642		NM_003099	ENSG00000028528	SNX1	HsT17379|VPS5	sorting nexin 1	protein-coding
69838	chr14	99238151	99238700	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	33772	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
85216	chr16	47460271	47462730	+	0	NA	promoter-TSS (NM_001305002)	promoter-TSS (NM_001305002)	169	NM_000293	5257		NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding
3396	chr1	15738421	15738930	+	0	NA	exon (NM_207348, exon 4 of 5)	exon (NM_207348, exon 4 of 5)	2417	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
92442	chr17	8465621	8466080	+	0	NA	intron (NM_001025579, intron 9 of 9)	intron (NM_001025579, intron 9 of 9)	29966	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
76702	chr15	75810051	75810300	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-33272	NM_001284382	92912		NM_173469	ENSG00000140367	UBE2Q2	-	ubiquitin conjugating enzyme E2 Q2	protein-coding
107336	chr18	45722821	45723130	+	0	NA	Intergenic	Intergenic	-1206	NM_001308278	6563		NM_015865	ENSG00000141469	SLC14A1	HUT11|HUT11A|HsT1341|JK|Jk(a)|Jk(b)|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 member 1 (Kidd blood group)	protein-coding
68605	chr14	89609521	89609780	+	0	NA	intron (NM_001085471, intron 1 of 6)	MIR|SINE|MIR	9515	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
119796	chr19	41327001	41329180	+	0	NA	Intergenic	Intergenic	17613	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
159716	chr3	15731171	15731530	+	0	NA	intron (NM_001349277, intron 6 of 27)	intron (NM_001349277, intron 6 of 27)	25197	NM_001195099	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
99747	chr17	50943751	50945380	+	0	NA	Intergenic	CpG	-76587	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
26040	chr10	12365801	12366830	+	0	NA	intron (NM_153498, intron 1 of 10)	intron (NM_153498, intron 1 of 10)	16768	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
19921	chr1	184388801	184389780	+	0	NA	intron (NM_030806, intron 1 of 5)	intron (NM_030806, intron 1 of 5)	2261	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
118287	chr19	35297871	35298230	+	0	NA	intron (NM_001199216, intron 4 of 10)	(AC)n|Simple_repeat|Simple_repeat	5889	NM_002361	4099		NM_002361	ENSG00000105695	MAG	GMA|S-MAG|SIGLEC-4A|SIGLEC4|SIGLEC4A|SPG75	myelin associated glycoprotein	protein-coding
176545	chr4	98288501	98289300	+	0	NA	intron (NM_001100427, intron 1 of 14)	intron (NM_001100427, intron 1 of 14)	27516	NM_001100428	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
178356	chr4	146159571	146159930	+	0	NA	Intergenic	Intergenic	-15968	NM_007080	11157		NM_007080	ENSG00000164167	LSM6	YDR378C	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
102689	chr17	76131821	76132250	+	0	NA	Intergenic	Intergenic	-8521	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
232687	chr9	136526821	136527370	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	-7469	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
186130	chr5	134152371	134152830	+	0	NA	3' UTR (NM_170679, exon 6 of 6)	3' UTR (NM_170679, exon 6 of 6)	24350	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
151297	chr21	45534701	45535100	+	0	NA	promoter-TSS (NM_001205207)	promoter-TSS (NM_001205207)	-144	NM_001205207	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
111217	chr19	3493721	3494500	+	0	NA	intron (NM_031304, intron 2 of 4)	intron (NM_031304, intron 2 of 4)	6564	NM_031304	83475		NM_031304	ENSG00000129932	DOHH	HLRC1|NEDMVIC|hDOHH	deoxyhypusine hydroxylase	protein-coding
60612	chr13	42110321	42110930	+	0	NA	intron (NM_001204504, intron 2 of 29)	intron (NM_001204504, intron 2 of 29)	-27433	NM_001204506	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
48844	chr12	12370771	12371330	+	0	NA	intron (NM_058169, intron 2 of 3)	L1MC4|LINE|L1	13972	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
76348	chr15	74438421	74439090	+	0	NA	Intergenic	Intergenic	-4797	NM_001146029	8482		NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|PFIC11|SEMAK1|SEMAL	semaphorin 7A (JohnMiltonHagen blood group)	protein-coding
228250	chr9	97988971	97989330	+	0	NA	intron (NM_006401, intron 1 of 6)	intron (NM_006401, intron 1 of 6)	5809	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
22446	chr1	220803701	220803900	+	0	NA	intron (NM_022746, intron 4 of 6)	intron (NM_022746, intron 4 of 6)	16887	NM_022746	64757		NM_022746	ENSG00000186205	MTARC1	MARC1|MOSC1	mitochondrial amidoxime reducing component 1	protein-coding
143245	chr20	25047821	25048480	+	0	NA	exon (NM_032501, exon 2 of 14)	exon (NM_032501, exon 2 of 14)	9989	NM_032501	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
74773	chr15	63246851	63247450	+	0	NA	intron (NM_016530, intron 2 of 7)	MLT1A0|LTR|ERVL-MaLR	-30400	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
157486	chr22	45313371	45313630	+	0	NA	intron (NM_001349915, intron 1 of 7)	AluSq2|SINE|Alu	3566	NM_017911	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
124278	chr19	57814521	57815750	+	0	NA	promoter-TSS (NM_024762)	promoter-TSS (NM_024762)	-222	NM_024762	79818		NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
102560	chr17	75850821	75851080	+	0	NA	intron (NM_012478, intron 2 of 7)	AluJb|SINE|Alu	4385	NM_012478	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
212061	chr7	114997721	114998230	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	75821	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
213632	chr7	139644051	139644350	+	0	NA	intron (NM_022740, intron 2 of 14)	L1ME3D|LINE|L1	120515	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
65082	chr14	39430401	39430600	+	0	NA	intron (NM_203301, intron 1 of 3)	intron (NM_203301, intron 1 of 3)	2000	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
142976	chr20	20015851	20016300	+	0	NA	Intergenic	AluJb|SINE|Alu	-1215	NM_181528	51126		NM_016100	ENSG00000173418	NAA20	MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein-coding
151122	chr21	44888321	44888580	+	0	NA	intron (NM_001127491, intron 14 of 15)	intron (NM_001127491, intron 14 of 15)	-14547	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
8144	chr1	39332901	39333200	+	0	NA	intron (NM_012090, intron 35 of 92)	intron (NM_012090, intron 35 of 92)	-76023	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
15320	chr1	149881521	149882750	+	0	NA	Intergenic	Intergenic	4547	NM_003528	8349		NM_003528	ENSG00000184678	H2BC21	GL105|H2B|H2B-GL105|H2B.1|H2BE|H2BFQ|H2BGL105|H2BQ|HIST2H2BE	H2B clustered histone 21	protein-coding
42933	chr11	73404971	73405130	+	0	NA	3' UTR (NM_001286051, exon 6 of 6)	3' UTR (NM_001286051, exon 6 of 6)	28382	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
87814	chr16	75569071	75569630	+	0	NA	intron (NM_007285, intron 3 of 3)	intron (NM_007285, intron 3 of 3)	2971	NM_007285	11345		NM_007285	ENSG00000034713	GABARAPL2	ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2	GABA type A receptor associated protein like 2	protein-coding
93066	chr17	17504201	17504500	+	0	NA	Intergenic	Intergenic	-7955	NM_001199989	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
177963	chr4	139021071	139021900	+	0	NA	intron (NM_012118, intron 1 of 2)	AluSp|SINE|Alu	5704	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
192148	chr6	16950701	16950900	+	0	NA	Intergenic	Intergenic	-151250	NM_001190766	401236		NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
135943	chr2	171940701	171941200	+	0	NA	intron (NR_027862, intron 2 of 9)	Charlie3|DNA|hAT-Charlie	18489	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
95695	chr17	38431651	38432150	+	0	NA	intron (NM_001199417, intron 1 of 23).2	intron (NM_001199417, intron 1 of 23).2	3436	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
41905	chr11	67273421	67275000	+	0	NA	intron (NM_001619, intron 1 of 20)	AluSx4|SINE|Alu	7737	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
100685	chr17	63819171	63820450	+	0	NA	TTS (NM_007372)	TTS (NM_007372)	-7621	NM_002805	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
176827	chr4	102559701	102560200	+	0	NA	intron (NM_001382625, intron 6 of 24)	AluJr4|SINE|Alu	-57464	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
117665	chr19	24036001	24036480	+	0	NA	intron (NM_001278677, intron 1 of 5)	AluYc3|SINE|Alu	2791	NM_001278663	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
3588	chr1	16219151	16219930	+	0	NA	Intergenic	Intergenic	-6888	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
36404	chr11	4076471	4077030	+	0	NA	TTS (NM_001382572)	TTS (NM_001382572)	-17935	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
79182	chr16	314001	314400	+	0	NA	intron (NM_181050, intron 3 of 9)	intron (NM_181050, intron 3 of 9)	31036	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
7439	chr1	32983071	32983430	+	0	NA	Intergenic	Intergenic	-18441	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
59712	chr13	29713971	29714130	+	0	NA	Intergenic	Intergenic	66357	NR_135320	102723345		NR_135320		LOC102723345	-	uncharacterized LOC102723345	ncRNA
163438	chr3	50587871	50588800	+	0	NA	3' UTR (NM_001377425, exon 11 of 11)	3' UTR (NM_001377425, exon 11 of 11)	-17308	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
95660	chr17	38255271	38255430	+	0	NA	intron (NR_036750, intron 1 of 11)	intron (NR_036750, intron 1 of 11)	1899	NR_036750	440434		NR_036750	ENSG00000291088	NPEPPSP1	NPEPPSL1	NPEPPS pseudogene 1	pseudo
100418	chr17	60578401	60578650	+	0	NA	intron (NR_126009, intron 3 of 3)	AluY|SINE|Alu	13979	NR_126009	388406		NR_126009	ENSG00000267772	LINC01999	-	long intergenic non-protein coding RNA 1999	ncRNA
174151	chr4	36246201	36246400	+	0	NA	intron (NR_122079, intron 2 of 4)	intron (NR_122079, intron 2 of 4)	-1786	NR_146894	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
147788	chr20	62620671	62620830	+	0	NA	Intergenic	Intergenic	-21753	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
159133	chr3	12644871	12645030	+	0	NA	intron (NM_001354691, intron 1 of 16)	AluSc5|SINE|Alu	18558	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
14742	chr1	145994371	145994950	+	0	NA	exon (NM_006472, exon 5 of 8)	exon (NM_006472, exon 5 of 8)	1084	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
110852	chr19	2597171	2597630	+	0	NA	intron (NM_052847, intron 2 of 4)	AluSq2|SINE|Alu	-33315	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
61115	chr13	48491121	48491660	+	0	NA	intron (NR_147985, intron 11 of 11)	intron (NR_147985, intron 11 of 11)	41690	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
121350	chr19	46821101	46822300	+	0	NA	Intergenic	MER52C|LTR|ERV1	9004	NR_024258	100170220		NR_024258		SNAR-E	-	small NF90 (ILF3) associated RNA E	snRNA
67697	chr14	73244721	73245050	+	0	NA	non-coding (NR_135248, exon 2 of 2)	non-coding (NR_135248, exon 2 of 2)	1116	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
23062	chr1	226631921	226632380	+	0	NA	3' UTR (NM_002221, exon 8 of 8)	3' UTR (NM_002221, exon 8 of 8)	42918	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
189831	chr5	177088071	177088980	+	0	NA	intron (NM_213647, intron 1 of 17)	intron (NM_213647, intron 1 of 17)	-1025	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
201816	chr6	150018901	150019400	+	0	NA	intron (NM_130900, intron 4 of 4)	intron (NM_130900, intron 4 of 4)	6382	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
224937	chr9	33027611	33028300	+	0	NA	intron (NM_001539, intron 3 of 8)	AluSx|SINE|Alu	2682	NM_001539	3301		NM_001539	ENSG00000086061	DNAJA1	DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2	DnaJ heat shock protein family (Hsp40) member A1	protein-coding
123003	chr19	51002601	51002830	+	0	NA	3' UTR (NM_012315, exon 5 of 5)	3' UTR (NM_012315, exon 5 of 5)	-1013	NM_001281431	11202		NM_007196	ENSG00000129455	KLK8	HNP|NP|NRPN|PRSS19|TADG14	kallikrein related peptidase 8	protein-coding
218317	chr8	42720551	42720650	+	0	NA	intron (NM_000749, intron 3 of 5)	L2c|LINE|L2	23224	NM_001347717	1142		NM_000749	ENSG00000147432	CHRNB3	-	cholinergic receptor nicotinic beta 3 subunit	protein-coding
189516	chr5	173581601	173581980	+	0	NA	TTS (NR_027109)	TTS (NR_027109)	2156	NR_027108	285593		NR_027108	ENSG00000253955	LINC02995	-	long intergenic non-protein coding RNA 2995	ncRNA
72665	chr15	38535601	38535800	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	29114	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
52417	chr12	55773851	55774350	+	0	NA	intron (NM_033082, intron 9 of 10)	AluJo|SINE|Alu	30978	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
29938	chr10	73411401	73411850	+	0	NA	intron (NM_001156, intron 1 of 12)	AluSx|SINE|Alu	2433	NM_001156	310		NM_001156	ENSG00000138279	ANXA7	ANX7|SNX|SYNEXIN	annexin A7	protein-coding
150977	chr21	44332051	44332150	+	0	NA	intron (NM_001271440, intron 4 of 6)	intron (NM_001271440, intron 4 of 6)	6238	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
201531	chr6	149146371	149146530	+	0	NA	Intergenic	L1PA7|LINE|L1	-71474	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
149685	chr21	33933721	33934930	+	0	NA	intron (NR_038883, intron 1 of 2)	intron (NR_038883, intron 1 of 2)	3111	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
5299	chr1	25204151	25204250	+	0	NA	Intergenic	Intergenic	28302	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
111030	chr19	3074571	3074730	+	0	NA	Intergenic	AluJr|SINE|Alu	-9936	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
173335	chr4	7661801	7662000	+	0	NA	intron (NM_020777, intron 6 of 26)	intron (NM_020777, intron 6 of 26)	-92190	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
230715	chr9	128806721	128807180	+	0	NA	intron (NM_018201, intron 11 of 11)	AluSx|SINE|Alu	-11550	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
208886	chr7	73839051	73839350	+	0	NA	intron (NM_152559, intron 5 of 5)	AluSx1|SINE|Alu	3316	NM_152559	155368		NM_152559	ENSG00000165171	METTL27	WBSCR27	methyltransferase like 27	protein-coding
117801	chr19	29873201	29874030	+	0	NA	Intergenic	CpG	-50042	NM_001252641	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
127854	chr2	45643271	45644090	+	0	NA	Intergenic	CpG	-7995	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
14308	chr1	143813951	143814050	+	0	NA	Intergenic	Intergenic	20400	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
149418	chr21	31196001	31196800	+	0	NA	intron (NM_001353694, intron 12 of 27)	AluSz|SINE|Alu	-35460	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
72690	chr15	38562171	38562830	+	0	NA	intron (NM_001128602, intron 1 of 15)	intron (NM_001128602, intron 1 of 15)	2314	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
119768	chr19	41297301	41298900	+	0	NA	intron (NM_144732, intron 10 of 14)	intron (NM_144732, intron 10 of 14)	-12072	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
87037	chr16	68280251	68281000	+	0	NA	intron (NM_001076785, intron 4 of 11)	FLAM_C|SINE|Alu	16099	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
80673	chr16	3025771	3025930	+	0	NA	intron (NM_001347703, intron 3 of 13)	intron (NM_001347703, intron 3 of 13)	-1564	NM_001002018	54985		NM_017885	ENSG00000103145	HCFC1R1	HPIP	host cell factor C1 regulator 1	protein-coding
235193	chrX	41341671	41341830	+	0	NA	intron (NM_001193417, intron 3 of 15)	intron (NM_001193417, intron 3 of 15)	7584	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
193706	chr6	31139701	31140100	+	0	NA	promoter-TSS (NM_014069)	promoter-TSS (NM_014069)	-834	NM_014069	170680		NM_014069	ENSG00000204538	PSORS1C2	C6orf17|SPR1	psoriasis susceptibility 1 candidate 2	protein-coding
211387	chr7	105019201	105019400	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	5095	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
29289	chr10	69231671	69231830	+	0	NA	intron (NM_025130, intron 2 of 17)	L2c|LINE|L2	740	NR_120648	101928994		NR_120648	ENSG00000229261	LOC101928994	-	uncharacterized LOC101928994	ncRNA
226045	chr9	43147351	43147550	+	0	NA	Intergenic	Intergenic	21284	NR_160669	102724904		NR_160669	ENSG00000291167	LOC102724904	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
218811	chr8	59085001	59085430	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	33932	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
88716	chr16	85947451	85948380	+	0	NA	Intergenic	Intergenic	29568	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
12631	chr1	109167301	109167500	+	0	NA	intron (NM_020775, intron 3 of 21)	intron (NM_020775, intron 3 of 21)	-19149	NM_001284353	57535		NM_020775	ENSG00000116299	ELAPOR1	EIG121|KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein-coding
188943	chr5	160474901	160475480	+	0	NA	TTS (NR_036095)	TTS (NR_036095)	788	NR_036095	100422938		NR_036095		MIR3142	-	microRNA 3142	ncRNA
222458	chr8	139630871	139631180	+	0	NA	intron (NR_104210, intron 1 of 3)	intron (NR_104210, intron 1 of 3)	72098	NR_104210	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
233056	chr9	137071871	137072030	+	0	NA	Intergenic	AluJb|SINE|Alu	-1393	NM_178448	89958		NM_178448	ENSG00000186193	SAPCD2	C9orf140|p42.3	suppressor APC domain containing 2	protein-coding
77422	chr15	83919301	83919700	+	0	NA	intron (NM_207517, intron 16 of 29)	L2-3_Crp|LINE|L2	-160687	NR_036652	648809		NR_036652		EFL1P1	EFTUD1P1|FAM42B|HsT19321	elongation factor like GTPase 1 pseudogene 1	pseudo
34733	chr10	133686751	133687130	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-60145	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
209195	chr7	75418271	75418800	+	0	NA	3' UTR (NM_001099415, exon 15 of 15)	3' UTR (NM_001099415, exon 15 of 15)	8213	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
20857	chr1	201946201	201947400	+	0	NA	promoter-TSS (NM_012134)	promoter-TSS (NM_012134)	-252	NM_012134	25802		NM_012134	ENSG00000163431	LMOD1	1D|64kD|D1|MMIHS3|SM-LMOD|SMLMOD	leiomodin 1	protein-coding
37212	chr11	14357571	14358400	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	500	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
189337	chr5	172174501	172175000	+	0	NA	intron (NM_005990, intron 1 of 18)	L2c|LINE|L2	13474	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
225990	chr9	41272271	41273400	+	0	NA	Intergenic	L1M4|LINE|L1	-39000	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
218536	chr8	53878701	53878900	+	0	NA	intron (NM_001286674, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	-2072	NR_104579	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
97311	chr17	43238201	43238480	+	0	NA	Intergenic	Intergenic	1771	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
223161	chr8	143536701	143537050	+	0	NA	intron (NM_015117, intron 2 of 11)	intron (NM_015117, intron 2 of 11)	4572	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
91870	chr17	7239101	7241050	+	0	NA	promoter-TSS (NM_001284517)	promoter-TSS (NM_001284517)	-618	NM_024297	79142		NM_024297	ENSG00000040633	PHF23	hJUNE-1b	PHD finger protein 23	protein-coding
61534	chr13	60163511	60164950	+	0	NA	promoter-TSS (NM_001258366)	promoter-TSS (NM_001258366)	-245	NM_001258369	81624		NM_030932	ENSG00000139734	DIAPH3	AN|AUNA1|DIA2|DRF3|NSDAN|diap3|mDia2	diaphanous related formin 3	protein-coding
106108	chr18	9162171	9162530	+	0	NA	intron (NM_001204056, intron 1 of 11)	L1PA11|LINE|L1	24787	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
25383	chr10	6490301	6490830	+	0	NA	intron (NM_001282644, intron 8 of 17)	AluJo|SINE|Alu	89711	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
211881	chr7	111092671	111092830	+	0	NA	intron (NM_018334, intron 1 of 1)	intron (NM_018334, intron 1 of 1)	1623	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
136896	chr2	189443201	189443400	+	0	NA	intron (NM_032168, intron 1 of 20)	L2c|LINE|L2	1826	NM_032168	84128		NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
181242	chr5	39199701	39200500	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	19463	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
117307	chr19	19499051	19499930	+	0	NA	intron (NM_017660, intron 8 of 11)	intron (NM_017660, intron 8 of 11)	16058	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
46608	chr11	128569101	128569300	+	0	NA	intron (NM_001143820, intron 2 of 9)	MER20|DNA|hAT-Charlie	18358	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
140945	chr2	237743851	237744250	+	0	NA	intron (NM_001137550, intron 11 of 23)	intron (NM_001137550, intron 11 of 23)	51845	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
234598	chrX	19793821	19794080	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	5823	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
69720	chr14	98208201	98208930	+	0	NA	Intergenic	Intergenic	-230441	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
86590	chr16	67248401	67249830	+	0	NA	exon (NM_004594, exon 1 of 16)	exon (NM_004594, exon 1 of 16)	136	NM_004594	6553		NM_004594	ENSG00000135740	SLC9A5	NHE5	solute carrier family 9 member A5	protein-coding
206439	chr7	32866801	32867750	+	0	NA	TTS (NM_015483)	TTS (NM_015483)	24485	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
196558	chr6	44080251	44080550	+	0	NA	Intergenic	AluYh3|SINE|Alu	-5748	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
217231	chr8	26574821	26575080	+	0	NA	intron (NM_001197293, intron 1 of 13)	AluSq|SINE|Alu	-2995	NM_001386	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
136437	chr2	176652401	176652950	+	0	NA	intron (NR_110599, intron 2 of 3)	intron (NR_110599, intron 2 of 3)	14921	NR_110599	102724224		NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA
169071	chr3	153401001	153401200	+	0	NA	intron (NR_146713, intron 5 of 6)	L1MCb|LINE|L1	-83395	NR_160966	152118		NR_160966	ENSG00000237787	LINC02877	C3orf79	long intergenic non-protein coding RNA 2877	ncRNA
35071	chr11	609721	610600	+	0	NA	intron (NM_001286582, intron 14 of 17)	intron (NM_001286582, intron 14 of 17)	5790	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
176321	chr4	87710701	87710950	+	0	NA	Intergenic	L1PA2|LINE|L1	60545	NM_001079911	1758		NM_004407	ENSG00000152592	DMP1	ARHP|ARHR|DMP-1	dentin matrix acidic phosphoprotein 1	protein-coding
31079	chr10	89163501	89164180	+	0	NA	Intergenic	Intergenic	43477	NM_003956	9023		NM_003956	ENSG00000138135	CH25H	C25H	cholesterol 25-hydroxylase	protein-coding
182486	chr5	62412051	62413400	+	0	NA	promoter-TSS (NM_016338)	promoter-TSS (NM_016338)	-38	NM_016338	51194		NM_016338	ENSG00000086200	IPO11	RanBP11	importin 11	protein-coding
215463	chr7	158055251	158055430	+	0	NA	intron (NM_130842, intron 10 of 21)	LTR13|LTR|ERVK	200755	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
214065	chr7	143393171	143393330	+	0	NA	intron (NM_005232, intron 16 of 17)	L2b|LINE|L2	10564	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
170159	chr3	183552701	183553380	+	0	NA	TTS (NR_046687)	TTS (NR_046687)	2666	NM_130446	89857		NM_130446	ENSG00000172578	KLHL6	-	kelch like family member 6	protein-coding
98143	chr17	46022521	46022780	+	0	NA	intron (NR_165166, intron 9 of 9)	intron (NR_165166, intron 9 of 9)	23400	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
221423	chr8	123765921	123766700	+	0	NA	Intergenic	Intergenic	-2129	NM_144963	157769		NM_144963	ENSG00000176853	FAM91A1	-	family with sequence similarity 91 member A1	protein-coding
125140	chr2	9953171	9953330	+	0	NA	intron (NM_198182, intron 1 of 15)	intron (NM_198182, intron 1 of 15)	1557	NM_198182	29841		NM_198182	ENSG00000134317	GRHL1	LBP32|MGR|NH32|TFCP2L2	grainyhead like transcription factor 1	protein-coding
63363	chr13	114041551	114041850	+	0	NA	intron (NM_001320822, intron 3 of 23).2	CpG	36255	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
50571	chr12	48196751	48196850	+	0	NA	Intergenic	AluSp|SINE|Alu	6492	NM_001004134	121275		NM_001004134	ENSG00000172640	OR10AD1	OR10AD1P|OR12-1	olfactory receptor family 10 subfamily AD member 1	protein-coding
195247	chr6	36369401	36369600	+	0	NA	intron (NM_001207038, intron 4 of 6)	intron (NM_001207038, intron 4 of 6)	18169	NM_001207038	51513		NM_016135	ENSG00000010030	ETV7	TEL-2|TEL2|TELB	ETS variant transcription factor 7	protein-coding
86565	chr16	67203251	67203550	+	0	NA	exon (NM_024712, exon 18 of 20)	exon (NM_024712, exon 18 of 20)	-1005	NR_029887	442901		NR_029887	ENSG00000207948	MIR328	MIRN328|hsa-mir-328|mir-328	microRNA 328	ncRNA
225646	chr9	36386801	36387200	+	0	NA	intron (NM_194332, intron 1 of 10)	AluSz|SINE|Alu	13269	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
142588	chr20	5547871	5548730	+	0	NA	intron (NM_019593, intron 19 of 19)	intron (NM_019593, intron 19 of 19)	-38298	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
229432	chr9	121365621	121366200	+	0	NA	intron (NM_001270526, intron 1 of 6)	intron (NM_001270526, intron 1 of 6)	4340	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
155709	chr22	39101101	39101680	+	0	NA	exon (NM_001166002, exon 3 of 5)	exon (NM_001166002, exon 3 of 5)	4146	NM_001166002	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
109945	chr19	1354221	1355800	+	0	NA	promoter-TSS (NM_001369797)	promoter-TSS (NM_001369797)	51	NM_001369790	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
195323	chr6	36607251	36607950	+	0	NA	Intergenic	AluJb|SINE|Alu	13238	NM_003017	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
50620	chr12	48687751	48687850	+	0	NA	TTS (NM_001277842)	TTS (NM_001277842)	-5562	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
153277	chr22	24155601	24156600	+	0	NA	intron (NM_012295, intron 29 of 36)	CpG	-25387	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
185509	chr5	131322771	131323830	+	0	NA	intron (NM_001375633, intron 2 of 5)	AluJo|SINE|Alu	59247	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
22628	chr1	223696451	223697050	+	0	NA	Intergenic	Intergenic	-4843	NM_001146068	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
37724	chr11	31366721	31367380	+	0	NA	intron (NM_181807, intron 1 of 8)	AluJb|SINE|Alu	2689	NM_001367979	341019		NM_020869	ENSG00000170959	DCDC1	DCDC5	doublecortin domain containing 1	protein-coding
116299	chr19	17766551	17767100	+	0	NA	intron (NM_001384388, intron 7 of 28)	CpG	12616	NR_169258	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
60435	chr13	41000221	41000480	+	0	NA	intron (NM_001370329, intron 1 of 9)	AluSz|SINE|Alu	-17451	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
156219	chr22	40337801	40338400	+	0	NA	Intergenic	L2|LINE|L2	-8400	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
83241	chr16	23865201	23865480	+	0	NA	intron (NM_212535, intron 2 of 16)	AluJb|SINE|Alu	29357	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
33526	chr10	119220601	119220800	+	0	NA	intron (NM_005308, intron 1 of 15)	AluSx|SINE|Alu	13129	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
107491	chr18	47754521	47754930	+	0	NA	Intergenic	Intergenic	175934	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
220757	chr8	102385671	102386030	+	0	NA	intron (NM_001282873, intron 1 of 58)	L2c|LINE|L2	-26489	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
172155	chr4	1212071	1213350	+	0	NA	non-coding (NR_104331, exon 4 of 6)	non-coding (NR_104331, exon 4 of 6)	2590	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
231152	chr9	129872971	129873200	+	0	NA	intron (NM_001110303, intron 15 of 25)	AluSx|SINE|Alu	3480	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
6946	chr1	31750421	31751380	+	0	NA	intron (NM_001294336, intron 4 of 31)	intron (NM_001294336, intron 4 of 31)	7835	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
195029	chr6	35475521	35475780	+	0	NA	exon (NM_003214, exon 11 of 13)	exon (NM_003214, exon 11 of 13)	5142	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
2530	chr1	9719071	9719730	+	0	NA	intron (NM_001350234, intron 9 of 23)	AluSx3|SINE|Alu	27933	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
7092	chr1	32070101	32070750	+	0	NA	Intergenic	AluJb|SINE|Alu	-1606	NM_001319677	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
110780	chr19	2430101	2430300	+	0	NA	3' UTR (NM_032737, exon 12 of 12)	3' UTR (NM_032737, exon 12 of 12)	-2614	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
38051	chr11	35167771	35168300	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	5085	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
147294	chr20	57627721	57628800	+	0	NA	Intergenic	Intergenic	-7834	NM_001160419	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
107760	chr18	50401621	50402230	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	26879	NM_001039535	220134		NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
64057	chr14	22545671	22546900	+	0	NA	Intergenic	Intergenic	10777	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
213555	chr7	139111401	139113280	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-2620	NM_020119	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
74253	chr15	56959351	56959550	+	0	NA	intron (NM_207038, intron 3 of 19)	intron (NM_207038, intron 3 of 19)	40005	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
112103	chr19	5579471	5580280	+	0	NA	Intergenic	FRAM|SINE|Alu	-11841	NR_027064								
30297	chr10	75228751	75229750	+	0	NA	intron (NM_003375, intron 9 of 10)	intron (NM_003375, intron 9 of 10)	6707	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
238035	chrX	135213421	135213780	+	0	NA	Intergenic	Intergenic	-38461	NM_001355522	101928677		NM_001355522	ENSG00000238210	ETDA	-	embryonic testis differentiation homolog A	protein-coding
150808	chr21	43938771	43939880	+	0	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	13927	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
49623	chr12	27974951	27975450	+	0	NA	Intergenic	CpG	-2467	NM_198965	5744		NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
163361	chr3	50467401	50467600	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	36134	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
15090	chr1	148520071	148520600	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-37033	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
43052	chr11	74288901	74289100	+	0	NA	intron (NM_001288748, intron 5 of 12)	intron (NM_001288748, intron 5 of 12)	-22362	NR_120556	101928580		NR_120556	ENSG00000246211	P4HA3-AS1	-	P4HA3 antisense RNA 1	ncRNA
145630	chr20	44747401	44747850	+	0	NA	intron (NM_022358, intron 1 of 1)	intron (NM_022358, intron 1 of 1)	-1398	NR_132377	106144538		NR_132377		KCNK15-AS1	-	KCNK15 and WISP2 antisense RNA 1	ncRNA
17345	chr1	156486951	156487300	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	3562	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
26611	chr10	22324051	22324150	+	0	NA	intron (NM_005180, intron 1 of 9)	intron (NM_005180, intron 1 of 9)	3001	NM_005180	648		NM_005180	ENSG00000168283	BMI1	FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1	BMI1 proto-oncogene, polycomb ring finger	protein-coding
134189	chr2	134324001	134324200	+	0	NA	intron (NM_001371457, intron 5 of 16)	intron (NM_001371457, intron 5 of 16)	70028	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
204187	chr7	2477321	2478550	+	0	NA	Intergenic	Intergenic	-1552	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
43544	chr11	82906001	82906600	+	0	NA	intron (NM_001363481, intron 1 of 4)	intron (NM_001363481, intron 1 of 4)	-4560	NM_001319214	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
47746	chr12	6529451	6530050	+	0	NA	intron (NM_014865, intron 28 of 31)	intron (NM_014865, intron 28 of 31)	-4767	NR_152150	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
15065	chr1	148449351	148449780	+	0	NA	intron (NR_027468, intron 1 of 4)	intron (NR_027468, intron 1 of 4)	10355	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
7402	chr1	32936501	32936900	+	0	NA	3' UTR (NM_153341, exon 9 of 9)	3' UTR (NM_153341, exon 9 of 9)	28109	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
155631	chr22	38900921	38901530	+	0	NA	Intergenic	LTR38|LTR|ERV1	-29009	NM_014292	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
60957	chr13	46558551	46558730	+	0	NA	intron (NM_015116, intron 1 of 18)	AluSx1|SINE|Alu	5470	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
128447	chr2	55605871	55606030	+	0	NA	intron (NM_020463, intron 2 of 14)	intron (NM_020463, intron 2 of 14)	11672	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
234566	chrX	19745221	19745880	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	54223	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
237519	chrX	120196801	120197130	+	0	NA	Intergenic	MER76-int|LTR|ERVL	38352	NM_032498	84528		NM_032498	ENSG00000131721	RHOXF2	CT107|PEPP-2|PEPP2|THG1	Rhox homeobox family member 2	protein-coding
13696	chr1	116755101	116755550	+	0	NA	intron (NM_001328609, intron 2 of 4)	intron (NM_001328609, intron 2 of 4)	895	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
142949	chr20	19212871	19213030	+	0	NA	exon (NM_020689, exon 1 of 17)	exon (NM_020689, exon 1 of 17)	308	NM_020689	57419		NM_020689	ENSG00000185052	SLC24A3	NCKX3	solute carrier family 24 member 3	protein-coding
107517	chr18	48007971	48008630	+	0	NA	Intergenic	CpG	-77154	NM_001135937	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
136868	chr2	186848921	186849250	+	0	NA	promoter-TSS (NM_182521)	promoter-TSS (NM_182521)	85	NM_182521	151112		NM_182521	ENSG00000163012	ZSWIM2	MEX|ZZZ2	zinc finger SWIM-type containing 2	protein-coding
60532	chr13	41452221	41453180	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-4850	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
168332	chr3	141794021	141794830	+	0	NA	intron (NM_139209, intron 4 of 5)	L2a|LINE|L2	31017	NM_139209	131890		NM_139209	ENSG00000114124	GRK7	GPRK7	G protein-coupled receptor kinase 7	protein-coding
39369	chr11	59667671	59667830	+	0	NA	intron (NM_152716, intron 1 of 18)	intron (NM_152716, intron 1 of 18)	1287	NM_152716	219988		NM_152716	ENSG00000166889	PATL1	Pat1b|hPat1b	PAT1 homolog 1, processing body mRNA decay factor	protein-coding
136992	chr2	190535801	190536000	+	0	NA	Intergenic	Intergenic	-1178	NR_136298	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
191989	chr6	16206221	16206860	+	0	NA	Intergenic	Intergenic	-32047	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
50956	chr12	49541551	49541650	+	0	NA	intron (NM_001314030, intron 2 of 14)	intron (NM_001314030, intron 2 of 14)	2570	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
206294	chr7	30115801	30116000	+	0	NA	intron (NM_001350973, intron 13 of 13)	intron (NM_001350973, intron 13 of 13)	-19086	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
230701	chr9	128763351	128763650	+	0	NA	intron (NM_001375956, intron 1 of 15)	L2b|LINE|L2	8427	NM_006336	10444		NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related cell cycle regulator	protein-coding
216410	chr8	18731271	18731630	+	0	NA	intron (NM_015310, intron 9 of 15)	intron (NM_015310, intron 9 of 15)	77417	NM_206909	23362		NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
138766	chr2	216001471	216001830	+	0	NA	intron (NM_001372189, intron 1 of 4)	intron (NM_001372189, intron 1 of 4)	11901	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
117815	chr19	29952401	29952900	+	0	NA	intron (NR_045557, intron 1 of 9)	intron (NR_045557, intron 1 of 9)	10411	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
157895	chr22	49754971	49755130	+	0	NA	Intergenic	Intergenic	69281	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
179724	chr5	187401	187600	+	0	NA	3' UTR (NM_052909, exon 20 of 20)	3' UTR (NM_052909, exon 20 of 20)	-3995	NM_001080478	389257		NM_001080478	ENSG00000185028	LRRC14B	-	leucine rich repeat containing 14B	protein-coding
184891	chr5	112724751	112725050	+	0	NA	intron (NM_001354902, intron 1 of 14)	intron (NM_001354902, intron 1 of 14)	-12985	NM_001354904	324		NM_000038	ENSG00000134982	APC	BTPS2|DESMD|DP2|DP2.5|DP3|GS|PPP1R46	APC regulator of WNT signaling pathway	protein-coding
5583	chr1	25996971	25998900	+	0	NA	intron (NM_000437, intron 1 of 10)	intron (NM_000437, intron 1 of 10)	128	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
198919	chr6	110185121	110185430	+	0	NA	intron (NM_015891, intron 1 of 14)	AluYa5|SINE|Alu	4848	NM_015891	51362		NM_015891	ENSG00000168438	CDC40	EHB3|PCH15|PRP17|PRPF17	cell division cycle 40	protein-coding
85156	chr16	46582971	46583330	+	0	NA	intron (NM_001324319, intron 11 of 11)	intron (NM_001324319, intron 11 of 11)	-14053	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
107203	chr18	36066551	36068630	+	0	NA	promoter-TSS (NM_001303413)	promoter-TSS (NM_001303413)	4	NM_001303413	55197		NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
229997	chr9	126875551	126875650	+	0	NA	intron (NM_001099270, intron 1 of 1)	intron (NM_001099270, intron 1 of 1)	14961	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
194059	chr6	31857971	31858450	+	0	NA	3' UTR (NM_000434, exon 6 of 6).3	3' UTR (NM_000434, exon 6 of 6).3	4611	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
185330	chr5	126800601	126800930	+	0	NA	intron (NR_134488, intron 1 of 11)	AluSp|SINE|Alu	23629	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
173014	chr4	4417851	4418430	+	0	NA	TTS (NM_001346300)	TTS (NM_001346300)	31038	NM_001382227	27065		NM_014392	ENSG00000168824	NSG1	D4S234|D4S234E|NEEP21|P21	neuronal vesicle trafficking associated 1	protein-coding
93081	chr17	17613351	17614020	+	0	NA	Intergenic	Intergenic	-21977	NM_001267551	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
154193	chr22	31347201	31348180	+	0	NA	non-coding (NR_120386, exon 1 of 1)	non-coding (NR_120386, exon 1 of 1)	931	NR_120386	54944		NM_017834		LINC01521	-	long intergenic non-protein coding RNA 1521	ncRNA
236099	chrX	56801771	56802330	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-64466	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
114113	chr19	11135151	11135650	+	0	NA	Intergenic	AluY|SINE|Alu	20382	NM_001317033								
106097	chr18	9149871	9150500	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	12622	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
171632	chr3	197520851	197521430	+	0	NA	intron (NM_203315, intron 5 of 6)	intron (NM_203315, intron 5 of 6)	-11479	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
199240	chr6	111829101	111829300	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	43871	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
129147	chr2	65437671	65438050	+	0	NA	Intergenic	Intergenic	-5261	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
99599	chr17	50538821	50539080	+	0	NA	promoter-TSS (NR_135675)	promoter-TSS (NR_135675)	-196	NR_135675	105371824		NR_135675	ENSG00000250286	LOC105371824	-	uncharacterized LOC105371824	ncRNA
54056	chr12	75978951	75979650	+	0	NA	Intergenic	Intergenic	52476	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
160128	chr3	20042471	20042630	+	0	NA	intron (NM_003884, intron 1 of 17)	L1PB1|LINE|L1	2104	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
45893	chr11	120235001	120235280	+	0	NA	Intergenic	Intergenic	-1498	NM_001244682	25833		NM_014352	ENSG00000137709	POU2F3	Epoc-1|OCT-11|OCT11|OTF-11|PLA-1|PLA1|Skn-1a	POU class 2 homeobox 3	protein-coding
119925	chr19	41772671	41773250	+	0	NA	TTS (NM_002483)	TTS (NM_002483)	17430	NM_002483	4680		NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA|NCA-50/90	CEA cell adhesion molecule 6	protein-coding
182722	chr5	68255321	68256390	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-32664	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
200563	chr6	136278051	136278350	+	0	NA	exon (NM_001077440, exon 4 of 12)	exon (NM_001077440, exon 4 of 12)	11646	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
9857	chr1	54283271	54283980	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	47182	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
217583	chr8	29523471	29523630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-172866	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
236142	chrX	63506401	63506600	+	0	NA	intron (NR_152612, intron 1 of 2)	intron (NR_152612, intron 1 of 2)	54595	NR_152610	92249		NR_015353	ENSG00000235437	LINC01278	-	long intergenic non-protein coding RNA 1278	ncRNA
118235	chr19	35209801	35210000	+	0	NA	Intergenic	AluJr|SINE|Alu	18825	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
45922	chr11	120908271	120909030	+	0	NA	intron (NM_001282473, intron 13 of 17)	LTR16E2|LTR|ERVL	-13853	NR_132790	101929227		NR_132790	ENSG00000250493	LOC101929227	-	uncharacterized LOC101929227	ncRNA
179623	chr4	186104471	186105350	+	0	NA	5' UTR (NM_001367768, exon 1 of 14)	5' UTR (NM_001367768, exon 1 of 14)	206	NM_001367768	25854		NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
83440	chr16	27311271	27311900	+	0	NA	Intergenic	(GTGTGA)n|Simple_repeat|Simple_repeat	-2389	NM_001257406	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
101160	chr17	65100071	65101430	+	0	NA	promoter-TSS (NR_110801)	promoter-TSS (NR_110801)	-62	NR_110801	100507002		NR_110801		LOC100507002	-	uncharacterized LOC100507002	ncRNA
237752	chrX	129655821	129656080	+	0	NA	promoter-TSS (NM_017413)	promoter-TSS (NM_017413)	-994	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
232635	chr9	136457271	136457830	+	0	NA	exon (NM_001276418, exon 17 of 29)	exon (NM_001276418, exon 17 of 29)	-17705	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
201666	chr6	149502371	149502730	+	0	NA	Intergenic	AluSx3|SINE|Alu	-17536	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
185284	chr5	126446471	126446930	+	0	NA	intron (NR_146195, intron 1 of 15)	intron (NR_146195, intron 1 of 15)	-18450	NM_001146322	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
133859	chr2	128320871	128321030	+	0	NA	Intergenic	Intergenic	-2082	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
42439	chr11	69297901	69298950	+	0	NA	Intergenic	Intergenic	4270	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
203857	chr7	1457321	1457830	+	0	NA	intron (NM_182924, intron 1 of 16)	L2b|LINE|L2	1895	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
191548	chr6	11537051	11538580	+	0	NA	promoter-TSS (NM_001100829)	promoter-TSS (NM_001100829)	66	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
66641	chr14	63864021	63865650	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	11831	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
137304	chr2	195658951	195659650	+	0	NA	intron (NM_020342, intron 1 of 9)	intron (NM_020342, intron 1 of 9)	2074	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
134265	chr2	135689651	135690400	+	0	NA	intron (NM_001378107, intron 21 of 26)	intron (NM_001378107, intron 21 of 26)	24628	NR_029672	406915		NR_029672	ENSG00000207654	MIR128-1	MIR128A|MIRN128-1|MIRN128A|mir-128-1	microRNA 128-1	ncRNA
220328	chr8	98944051	98944700	+	0	NA	promoter-TSS (NM_001286841)	promoter-TSS (NM_001286841)	-28	NM_053001	116039		NM_053001	ENSG00000164920	OSR2	-	odd-skipped related transciption factor 2	protein-coding
152522	chr22	20964551	20965400	+	0	NA	promoter-TSS (NM_001018060)	promoter-TSS (NM_001018060)	-197	NM_001018060	150209		NM_144704	ENSG00000183773	AIFM3	AIFL	apoptosis inducing factor mitochondria associated 3	protein-coding
9555	chr1	51615151	51615450	+	0	NA	Intergenic	L2a|LINE|L2	-1792	NM_148906	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
196770	chr6	45486671	45487250	+	0	NA	intron (NM_001278478, intron 3 of 5)	intron (NM_001278478, intron 3 of 5)	64685	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
77525	chr15	84712221	84712780	+	0	NA	intron (NM_001271920, intron 1 of 6)	AluSx|SINE|Alu	3639	NM_014300	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
199573	chr6	118902751	118903050	+	0	NA	intron (NM_014034, intron 2 of 3)	intron (NM_014034, intron 2 of 3)	8748	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
137031	chr2	190722971	190723150	+	0	NA	Intergenic	MER131|DNA?|DNA?	63902	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
236393	chrX	71110001	71110300	+	0	NA	intron (NM_000206, intron 4 of 7)	intron (NM_000206, intron 4 of 7)	1427	NM_000206	3561		NM_000206	ENSG00000147168	IL2RG	CD132|CIDX|IL-2RG|IMD4|P64|SCIDX|SCIDX1	interleukin 2 receptor subunit gamma	protein-coding
90428	chr17	1351771	1352130	+	0	NA	intron (NR_024058, intron 6 of 6)	AluJo|SINE|Alu	48272	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
163617	chr3	52004921	52006050	+	0	NA	Intergenic	Intergenic	-9590	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
166679	chr3	120345471	120346000	+	0	NA	intron (NM_001099678, intron 1 of 3)	intron (NM_001099678, intron 1 of 3)	3619	NM_001099678	116064		NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
131800	chr2	98550521	98550780	+	0	NA	intron (NM_001351424, intron 14 of 25)	intron (NM_001351424, intron 14 of 25)	57862	NM_001008215	493753		NM_001008215	ENSG00000183513	COA5	6330578E17Rik|C2orf64|CEMCOX3|MC4DN9|Pet191	cytochrome c oxidase assembly factor 5	protein-coding
201698	chr6	149686671	149687450	+	0	NA	intron (NM_001350392, intron 2 of 6)	L2|LINE|L2	29365	NR_073033	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
61255	chr13	50055571	50056050	+	0	NA	intron (NR_152566, intron 5 of 13)	L2|LINE|L2	-6609	NR_029485	406948		NR_029485	ENSG00000283785	MIR15A	MIRN15A|hsa-mir-15a|miRNA15A|mir-15a	microRNA 15a	ncRNA
208495	chr7	67378271	67378500	+	0	NA	Intergenic	Intergenic	42409	NR_108104	101929736		NR_108104	ENSG00000291153	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
70581	chr14	102611851	102612150	+	0	NA	intron (NM_015156, intron 2 of 11)	AluJo|SINE|Alu	19351	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
154342	chr22	32410471	32410830	+	0	NA	intron (NM_014306, intron 1 of 11)	intron (NM_014306, intron 1 of 11)	1597	NM_014306	51493		NM_014306	ENSG00000100220	RTCB	C22orf28|DJ149A16.6|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding
58049	chr12	124469071	124470230	+	0	NA	intron (NM_001077261, intron 6 of 47)	MIRb|SINE|MIR	97962	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
100637	chr17	63638951	63639250	+	0	NA	intron (NM_001363768, intron 3 of 16)	intron (NM_001363768, intron 3 of 16)	16683	NM_203351	4215		NM_002401	ENSG00000198909	MAP3K3	MAPKKK3|MEKK3	mitogen-activated protein kinase kinase kinase 3	protein-coding
230639	chr9	128659471	128659800	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluSq2|SINE|Alu	-2785	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
147439	chr20	58909721	58910880	+	0	NA	intron (NM_001077488, intron 11 of 12)	intron (NM_001077488, intron 11 of 12)	18137	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
221055	chr8	116843851	116844730	+	0	NA	Intergenic	Intergenic	-30134	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
173387	chr4	7964421	7964780	+	0	NA	TTS (NM_001130084)	TTS (NM_001130084)	-24674	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
193569	chr6	30651851	30652280	+	0	NA	intron (NM_001109938, intron 4 of 5).6	AluSz|SINE|Alu	4932	NM_001161376	221545		NM_145029	ENSG00000204564	C6orf136	-	chromosome 6 open reading frame 136	protein-coding
114736	chr19	13210451	13210630	+	0	NA	intron (NM_023035, intron 44 of 46)	intron (NM_023035, intron 44 of 46)	60129	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
31960	chr10	100729321	100730050	+	0	NA	Intergenic	CpG	-5711	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
47558	chr12	4296301	4296700	+	0	NA	intron (NM_001759, intron 4 of 4)	intron (NM_001759, intron 4 of 4)	-20316	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
10477	chr1	66347821	66348350	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	-6450	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
228132	chr9	96686571	96687500	+	0	NA	Intergenic	CpG	-31718	NM_153698	195827		NM_153698	ENSG00000158122	PRXL2C	AAED1|C9orf21	peroxiredoxin like 2C	protein-coding
46494	chr11	128345251	128345950	+	0	NA	Intergenic	Intergenic	136834	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
202131	chr6	154924571	154924730	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-70665	NM_012454	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
88176	chr16	81714571	81714730	+	0	NA	Intergenic	Intergenic	49296	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
113256	chr19	8504971	8505130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2410	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
163789	chr3	52396901	52397450	+	0	NA	intron (NM_015512, intron 73 of 77)	intron (NM_015512, intron 73 of 77)	12833	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
211335	chr7	104897171	104897330	+	0	NA	intron (NR_027374, intron 3 of 3)	intron (NR_027374, intron 3 of 3)	29395	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
138798	chr2	216116221	216116680	+	0	NA	intron (NM_021141, intron 2 of 20)	intron (NM_021141, intron 2 of 20)	7102	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
38763	chr11	47160351	47162150	+	0	NA	3' UTR (NM_001003676, exon 8 of 8)	3' UTR (NM_001003676, exon 8 of 8)	15629	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
193680	chr6	31079451	31080150	+	0	NA	Intergenic	LTR41B|LTR|ERVL	26350	NR_003948	285834		NM_001348249	ENSG00000228789	HCG22	PBMUCL2	HLA complex group 22 (non-protein coding)	ncRNA
194353	chr6	32943751	32944680	+	0	NA	Intergenic	Intergenic	-3187	NM_002118	3109		NM_002118	ENSG00000242574	HLA-DMB	D6S221E|RING7	major histocompatibility complex, class II, DM beta	protein-coding
85398	chr16	50303801	50304500	+	0	NA	intron (NM_001114, intron 10 of 25)	intron (NM_001114, intron 10 of 25)	11534	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
224985	chr9	33102671	33103030	+	0	NA	Intergenic	Intergenic	-5842	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
31995	chr10	100934371	100934600	+	0	NA	intron (NM_018121, intron 9 of 19)	intron (NM_018121, intron 9 of 19)	21522	NM_001243770	55719		NM_018121	ENSG00000119906	SLF2	ATELS1|C10orf6|FAM178A	SMC5-SMC6 complex localization factor 2	protein-coding
149637	chr21	33491051	33492280	+	0	NA	promoter-TSS (NM_001040192)	promoter-TSS (NM_001040192)	51	NM_001040192	54943		NM_017833	ENSG00000177692	DNAJC28	C21orf55|C21orf78	DnaJ heat shock protein family (Hsp40) member C28	protein-coding
116434	chr19	18020221	18020480	+	0	NA	Intergenic	Intergenic	12180	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
56022	chr12	110401401	110401800	+	0	NA	5' UTR (NM_001385208, exon 1 of 11)	5' UTR (NM_001385208, exon 1 of 11)	349	NM_001385210	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
86462	chr16	66940221	66940680	+	0	NA	exon (NM_001365408, exon 5 of 12)	exon (NM_001365408, exon 5 of 12)	4934	NM_198061	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
186252	chr5	134501901	134502400	+	0	NA	Intergenic	Intergenic	-4402	NR_105045	101927934		NR_105045	ENSG00000251169	LINC01843	Lnc-APUE	long intergenic non-protein coding RNA 1843	ncRNA
231230	chr9	129969851	129970300	+	0	NA	intron (NM_001363755, intron 4 of 15)	AluY|SINE|Alu	73114	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
227470	chr9	91101521	91102230	+	0	NA	Intergenic	Intergenic	-17187	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
126340	chr2	27376001	27376700	+	0	NA	TTS (NM_001201459)	TTS (NM_001201459)	4094	NM_001201459	130557		NM_144631	ENSG00000163795	ZNF513	HMFT0656|RP58|Zfp513	zinc finger protein 513	protein-coding
195874	chr6	41569801	41570200	+	0	NA	intron (NM_138457, intron 2 of 16)	intron (NM_138457, intron 2 of 16)	-21379	NR_126415	101060264		NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA
158433	chr22	50580221	50580830	+	0	NA	intron (NM_005198, intron 5 of 10)	intron (NM_005198, intron 5 of 10)	-1913	NM_001145135	1375		NM_004377	ENSG00000205560	CPT1B	CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1	carnitine palmitoyltransferase 1B	protein-coding
126875	chr2	32061901	32062100	+	0	NA	Intergenic	AluJb|SINE|Alu	-1556	NM_199436	6683		NM_014946	ENSG00000021574	SPAST	ADPSP|FSP2|SPG4	spastin	protein-coding
161802	chr3	45381201	45381400	+	0	NA	Intergenic	L1PB1|LINE|L1	-7276	NM_001368263	23395		NM_015340	ENSG00000011376	LARS2	HLASA|LEURS|PRLTS4|mtLeuRS	leucyl-tRNA synthetase 2, mitochondrial	protein-coding
173881	chr4	24561321	24561580	+	0	NA	intron (NM_001358, intron 3 of 13)	L1PA15|LINE|L1	23104	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
66010	chr14	58256501	58256700	+	0	NA	intron (NR_038123, intron 2 of 9)	AluSg7|SINE|Alu	11757	NM_002788	5684		NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome 20S subunit alpha 3	protein-coding
72164	chr15	29116771	29117330	+	0	NA	intron (NM_001353793, intron 12 of 12).2	intron (NM_001353793, intron 12 of 12).2	46392	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
53345	chr12	64639851	64640500	+	0	NA	intron (NR_040718, intron 1 of 3)	L1MA10|LINE|L1	-17570	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
196123	chr6	42393151	42393750	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	58601	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
182895	chr5	70060771	70061130	+	0	NA	intron (NM_022874, intron 1 of 7)	AluSp|SINE|Alu	11281	NM_000344	6606		NM_000344	ENSG00000172062	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
37152	chr11	13561701	13562100	+	0	NA	Intergenic	Intergenic	-65725	NM_001316352	5741		NM_000315	ENSG00000152266	PTH	FIH1|PTH1	parathyroid hormone	protein-coding
5470	chr1	25644101	25644700	+	0	NA	intron (NM_020379, intron 1 of 11)	L2|LINE|L2	27609	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
16528	chr1	154942351	154943100	+	0	NA	promoter-TSS (NM_001323012)	promoter-TSS (NM_001323012)	-67	NM_001323012	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
680	chr1	1381951	1382850	+	0	NA	Intergenic	Intergenic	-7193	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
175121	chr4	54945771	54946130	+	0	NA	Intergenic	Intergenic	179645	NM_002253	3791		NM_002253	ENSG00000128052	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor	protein-coding
62416	chr13	99297371	99297750	+	0	NA	intron (NM_004951, intron 1 of 1)	intron (NM_004951, intron 1 of 1)	9839	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
189385	chr5	172719371	172719530	+	0	NA	Intergenic	Intergenic	-36053	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
81897	chr16	11717771	11717930	+	0	NA	intron (NM_001303447, intron 5 of 12)	intron (NM_001303447, intron 5 of 12)	25007	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
206788	chr7	36765671	36765830	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-41201	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
87944	chr16	79519551	79519850	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	81037	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
99825	chr17	55089221	55089630	+	0	NA	intron (NM_178509, intron 16 of 17)	intron (NM_178509, intron 16 of 17)	-120640	NM_001162862	1353		NM_004375	ENSG00000166260	COX11	COX11P|MC4DN23	cytochrome c oxidase copper chaperone COX11	protein-coding
57696	chr12	122851851	122852650	+	0	NA	intron (NM_001303099, intron 7 of 17)	intron (NM_001303099, intron 7 of 17)	16793	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
20642	chr1	200034371	200035130	+	0	NA	intron (NM_003822, intron 1 of 6)	intron (NM_003822, intron 1 of 6)	7040	NM_205860	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
231384	chr9	130706371	130706680	+	0	NA	Intergenic	AluJb|SINE|Alu	-7356	NM_007313	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
36698	chr11	8779021	8779360	+	0	NA	intron (NR_120590, intron 1 of 4)	L2c|LINE|L2	10412	NR_120590	102724784		NR_120590		DENND2B-AS1	-	DENND2B antisense RNA 1	ncRNA
105308	chr17	82528401	82529000	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	8968	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
203678	chr7	1018221	1018700	+	0	NA	intron (NR_146964, intron 1 of 4)	intron (NR_146964, intron 1 of 4)	4566	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
148118	chr20	63444371	63444880	+	0	NA	intron (NM_001382235, intron 4 of 16)	intron (NM_001382235, intron 4 of 16)	28030	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
155566	chr22	38731571	38732700	+	0	NA	3' UTR (NM_004286, exon 12 of 12)	3' UTR (NM_004286, exon 12 of 12)	23331	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
108383	chr18	69636871	69637100	+	0	NA	intron (NM_152721, intron 3 of 7)	intron (NM_152721, intron 3 of 7)	167054	NR_134579	105372179		NR_134579	ENSG00000293054	LOC105372179	-	uncharacterized LOC105372179	ncRNA
136618	chr2	178990601	178990880	+	0	NA	intron (NM_173648, intron 2 of 23)	L1MB5|LINE|L1	59397	NM_001316745	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
114360	chr19	12346901	12347180	+	0	NA	3' UTR (NM_030824, exon 6 of 6)	3' UTR (NM_030824, exon 6 of 6)	-13407	NM_145276	147837		NM_145276	ENSG00000188868	ZNF563	-	zinc finger protein 563	protein-coding
234631	chrX	19885601	19886130	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	1735	NM_001353891	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
157722	chr22	46536951	46538400	+	0	NA	promoter-TSS (NM_014246)	promoter-TSS (NM_014246)	-55	NM_001378328	9620		NM_014246	ENSG00000075275	CELSR1	ADGRC1|CDHF9|FMI2|HFMI2|LMPHM9|ME2	cadherin EGF LAG seven-pass G-type receptor 1	protein-coding
95194	chr17	35218251	35219430	+	0	NA	Intergenic	L1MC1|LINE|L1	-24232	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
1958	chr1	6582421	6583680	+	0	NA	intron (NM_005341, intron 3 of 10)	AluSc8|SINE|Alu	3056	NM_001278647	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
12511	chr1	108199321	108201130	+	0	NA	5' UTR (NM_013386, exon 1 of 10)	5' UTR (NM_013386, exon 1 of 10)	118	NM_013386	29957		NM_013386	ENSG00000085491	SLC25A24	APC1|SCAMC-1|SCAMC1	solute carrier family 25 member 24	protein-coding
141188	chr2	239299751	239300050	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-5562	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
136485	chr2	177224071	177224230	+	0	NA	TTS (NM_001330247)	TTS (NM_001330247)	11356	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
101313	chr17	66541801	66542400	+	0	NA	intron (NM_002737, intron 3 of 16)	intron (NM_002737, intron 3 of 16)	-125246	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
237880	chrX	130975901	130976150	+	0	NA	Intergenic	L1ME4a|LINE|L1	-72708	NM_182314	10495		NM_006375	ENSG00000165675	ENOX2	APK1|COVA1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding
185798	chr5	132423551	132424030	+	0	NA	intron (NR_161242, intron 2 of 3)	MLT1N2|LTR|ERVL-MaLR	12861	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
61775	chr13	74838051	74838750	+	0	NA	Intergenic	Intergenic	285557	NR_034025	338864		NR_034024	ENSG00000236678	LINC00347	-	long intergenic non-protein coding RNA 347	ncRNA
96577	chr17	40487901	40488400	+	0	NA	intron (NM_032865, intron 3 of 12)	intron (NM_032865, intron 3 of 12)	13473	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
223514	chr8	144102051	144102150	+	0	NA	intron (NM_030974, intron 2 of 8)	AluJo|SINE|Alu	1673	NR_038270	81858		NM_030974	ENSG00000179526	SHARPIN	AIFID|SIPL1	SHANK associated RH domain interactor	protein-coding
238314	chrX	149510401	149510600	+	0	NA	Intergenic	Intergenic	-5194	NM_001166550	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
90646	chr17	1665671	1666450	+	0	NA	intron (NM_006445, intron 24 of 42)	AluY|SINE|Alu	-16194	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
61614	chr13	73640871	73641080	+	0	NA	Intergenic	L1PA2|LINE|L1	76731	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
59172	chr13	21725751	21726130	+	0	NA	Intergenic	(CACCAC)n|Simple_repeat|Simple_repeat	54867	NM_002010	2254		NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
80900	chr16	3727701	3728400	+	0	NA	exon (NM_001079846, exon 30 of 30)	exon (NM_001079846, exon 30 of 30)	-10526	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
197002	chr6	53310551	53310650	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	27017	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
155598	chr22	38769871	38770030	+	0	NA	Intergenic	L2b|LINE|L2	-13952	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
3464	chr1	15946401	15946750	+	0	NA	intron (NM_001242884, intron 3 of 14)	L2a|LINE|L2	29526	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
115518	chr19	15429001	15429400	+	0	NA	intron (NM_001371589, intron 7 of 12)	intron (NM_001371589, intron 7 of 12)	3561	NM_001330395	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
105971	chr18	5295801	5297550	+	0	NA	promoter-TSS (NM_001243702)	promoter-TSS (NM_001243702)	378	NM_001243704	7541		NM_003409	ENSG00000198081	ZBTB14	ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478	zinc finger and BTB domain containing 14	protein-coding
171555	chr3	196883301	196883500	+	0	NA	intron (NM_001308045, intron 1 of 8)	HAL1|LINE|L1	15480	NM_152699	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
238087	chrX	136259321	136259680	+	0	NA	Intergenic	Intergenic	-3018	NM_001173516	79649		NM_024597	ENSG00000129680	MAP7D3	MDP3	MAP7 domain containing 3	protein-coding
228964	chr9	113510251	113510650	+	0	NA	intron (NM_144488, intron 15 of 25)	L2b|LINE|L2	8943	NM_130795	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
108089	chr18	61635751	61636200	+	0	NA	Intergenic	Intergenic	-112201	NR_103449	100996669		NR_103449		LINC01544	-	long intergenic non-protein coding RNA 1544	ncRNA
207833	chr7	50334301	50334930	+	0	NA	intron (NM_001291840, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	15567	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
224492	chr9	16884721	16885580	+	0	NA	Intergenic	Intergenic	-14480	NM_017637	54796		NM_017637	ENSG00000173068	BNC2	BSN2|LUTO|bn2	basonuclin zinc finger protein 2	protein-coding
110956	chr19	2902151	2902250	+	0	NA	intron (NM_173480, intron 1 of 3)	intron (NM_173480, intron 1 of 3)	1272	NM_173480	126295		NM_173480	ENSG00000171970	ZNF57	ZNF424	zinc finger protein 57	protein-coding
55468	chr12	104684251	104684350	+	0	NA	intron (NM_018413, intron 2 of 2)	(TGGA)n|Simple_repeat|Simple_repeat	92667	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
111503	chr19	3980801	3982250	+	0	NA	TTS (NR_002602)	TTS (NR_002602)	1047	NR_002602	26812		NR_002602	ENSG00000206775	SNORD37	RNU37|U37	small nucleolar RNA, C/D box 37	snoRNA
92545	chr17	8950251	8950350	+	0	NA	intron (NM_001142633, intron 1 of 18)	L1MB3|LINE|L1	15407	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
132261	chr2	102736101	102737230	+	0	NA	promoter-TSS (NM_001321346)	promoter-TSS (NM_001321346)	223	NM_001322081	84804		NM_032718	ENSG00000135953	MFSD9	-	major facilitator superfamily domain containing 9	protein-coding
185766	chr5	132292971	132294800	+	0	NA	promoter-TSS (NM_003059)	promoter-TSS (NM_003059)	-509	NM_003059	6583		NM_003059	ENSG00000197208	SLC22A4	DFNB60|ETTh|OCTN1	solute carrier family 22 member 4	protein-coding
74113	chr15	54519601	54519800	+	0	NA	intron (NM_001080534, intron 23 of 31)	intron (NM_001080534, intron 23 of 31)	-537047	NR_135679	105370829		NR_135679	ENSG00000260937	LOC105370829	-	uncharacterized LOC105370829	ncRNA
54783	chr12	94204621	94205150	+	0	NA	intron (NM_005761, intron 4 of 30)	intron (NM_005761, intron 4 of 30)	56308	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
142872	chr20	17679871	17680470	+	0	NA	intron (NM_001042576, intron 1 of 25)	intron (NM_001042576, intron 1 of 25)	2072	NM_001365613	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
85028	chr16	31703571	31704550	+	0	NA	intron (NR_024034, intron 4 of 8)	intron (NR_024034, intron 4 of 8)	3447	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
166990	chr3	125915221	125917480	+	0	NA	promoter-TSS (NR_024250)	promoter-TSS (NR_024250)	-251	NR_024251	100125556		NR_024250	ENSG00000291071	FAM86JP	-	family with sequence similarity 86, member A pseudogene	pseudo
55100	chr12	98490671	98491630	+	0	NA	intron (NR_038383, intron 3 of 3)	intron (NR_038383, intron 3 of 3)	12705	NR_038383	643770		NR_038383	ENSG00000245017	LINC02453	-	long intergenic non-protein coding RNA 2453	ncRNA
203351	chr6	170293921	170294550	+	0	NA	intron (NM_001286379, intron 1 of 10).2	CpG-24321	-1086	NM_001286380	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
232552	chr9	136351071	136351230	+	0	NA	intron (NM_001145638, intron 11 of 13)	intron (NM_001145638, intron 11 of 13)	-1907	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
210100	chr7	97614151	97614250	+	0	NA	Intergenic	L1HS|LINE|L1	-117886	NM_003182	6863		NM_003182	ENSG00000006128	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	tachykinin precursor 1	protein-coding
218661	chr8	57746051	57746150	+	0	NA	promoter-TSS (NR_134276)	promoter-TSS (NR_134276)	-49	NR_134276	286178		NR_134276	ENSG00000254139	LINC03018	-	long intergenic non-protein coding RNA 3018	ncRNA
138330	chr2	203804021	203804680	+	0	NA	Intergenic	Intergenic	-63421	NM_005214	1493		NM_005214	ENSG00000163599	CTLA4	ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12	cytotoxic T-lymphocyte associated protein 4	protein-coding
123530	chr19	54304071	54304430	+	0	NA	Intergenic	Intergenic	8916	NM_021250	353514		NM_021250	ENSG00000187116	LILRA5	CD85|CD85F|ILT-11|ILT11|LILRB7|LIR-9|LIR9	leukocyte immunoglobulin like receptor A5	protein-coding
56392	chr12	113193771	113193930	+	0	NA	Intergenic	Intergenic	8129	NM_032848	84934		NM_032848	ENSG00000139405	RITA1	C12orf52|RITA	RBPJ interacting and tubulin associated 1	protein-coding
26531	chr10	21509621	21509880	+	0	NA	Intergenic	CpG	-12490	NR_160800	399726		NM_001010911	ENSG00000204682	MIR1915HG	C10orf114|CASC10|bA418C1.3	MIR1915 host gene	ncRNA
164443	chr3	59427051	59428000	+	0	NA	Intergenic	MIR|SINE|MIR	230972	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
110606	chr19	2188451	2188550	+	0	NA	intron (NM_032482, intron 3 of 27)	intron (NM_032482, intron 3 of 27)	24567	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
187522	chr5	142441601	142442000	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	116507	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
231017	chr9	129575821	129576280	+	0	NA	Intergenic	Intergenic	-32834	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
165045	chr3	71435301	71435900	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	106489	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
212783	chr7	130064371	130064530	+	0	NA	Intergenic	AluSx|SINE|Alu	-6084	NM_014997	23008		NM_014997	ENSG00000128607	KLHDC10	PNAS-138|slim	kelch domain containing 10	protein-coding
101019	chr17	64774801	64775500	+	0	NA	intron (NR_026899, intron 3 of 12)	intron (NR_026899, intron 3 of 12)	-5609	NR_106728	102464831		NR_106728	ENSG00000278581	MIR6080	hsa-mir-6080	microRNA 6080	ncRNA
208982	chr7	74209571	74210600	+	0	NA	promoter-TSS (NM_014146)	promoter-TSS (NM_014146)	79	NM_014146	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
222981	chr8	143217601	143218900	+	0	NA	Intergenic	Intergenic	5032	NM_178172	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
75540	chr15	66703001	66703200	+	0	NA	non-coding (NR_027654, exon 1 of 5)	non-coding (NR_027654, exon 1 of 5)	864	NR_027654	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
218805	chr8	59055021	59055850	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	63712	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
84000	chr16	29452251	29452350	+	0	NA	intron (NM_001320624, intron 1 of 3)	AluSx|SINE|Alu	1905	NR_135304	552900		NM_001031827	ENSG00000183336	BOLA2	BOLA2A|BOLA2B|My016	bolA family member 2	protein-coding
40207	chr11	63478751	63479140	+	0	NA	intron (NM_054108, intron 3 of 5)	MIR3|SINE|MIR	12222	NM_054108	117245		NM_054108	ENSG00000168004	PLAAT5	HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT	phospholipase A and acyltransferase 5	protein-coding
104707	chr17	81546771	81546930	+	0	NA	intron (NR_033338, intron 5 of 8)	AluJr|SINE|Alu	5503	NR_033338	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
54128	chr12	76518051	76518150	+	0	NA	intron (NM_001003712, intron 1 of 22)	MSTB-int|LTR|ERVL-MaLR	41671	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
234709	chrX	20516001	20516300	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-249241	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
48914	chr12	12613451	12614500	+	0	NA	intron (NM_001310, intron 1 of 3)	AluSx|SINE|Alu	2099	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
208213	chr7	65223601	65224200	+	0	NA	intron (NR_146906, intron 15 of 17)	AluSz|SINE|Alu	82870	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
166646	chr3	119809571	119810530	+	0	NA	intron (NM_003889, intron 2 of 8)	intron (NM_003889, intron 2 of 8)	27340	NM_022002	8856		NM_003889	ENSG00000144852	NR1I2	BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR	nuclear receptor subfamily 1 group I member 2	protein-coding
35263	chr11	864201	864400	+	0	NA	intron (NM_001025235, intron 4 of 8)	intron (NM_001025235, intron 4 of 8)	19854	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
190051	chr5	177556521	177557480	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-2437	NM_001190946	54540		NM_019057	ENSG00000146067	FAM193B	IRIZIO	family with sequence similarity 193 member B	protein-coding
19503	chr1	175190401	175190880	+	0	NA	intron (NM_001162894, intron 1 of 3)	L2c|LINE|L2	2136	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
27568	chr10	32361321	32361780	+	0	NA	intron (NR_104163, intron 1 of 1)	LTR36|LTR|ERV1	14186	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
180899	chr5	34183971	34185100	+	0	NA	intron (NR_146599, intron 2 of 11)	AluSx1|SINE|Alu	-5046	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
32340	chr10	102246801	102247000	+	0	NA	intron (NM_001377141, intron 1 of 39)	intron (NM_001377141, intron 1 of 39)	1368	NR_165088	8729		NM_004193	ENSG00000107862	GBF1	ARF1GEF|CMT2GG|CMTDI2|CMTDIA	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein-coding
131214	chr2	95075521	95075930	+	0	NA	Intergenic	Intergenic	45832	NM_001321997	64969		NM_031902	ENSG00000144029	MRPS5	MRP-S5|S5mt|uS5m	mitochondrial ribosomal protein S5	protein-coding
212684	chr7	129644601	129644830	+	0	NA	intron (NM_001040110, intron 1 of 10)	intron (NM_001040110, intron 1 of 10)	14637	NM_001040110	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
21145	chr1	203675521	203676650	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	48148	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
184397	chr5	98895401	98895830	+	0	NA	intron (NR_157078, intron 12 of 36)	AluSx1|SINE|Alu	-32947	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
54821	chr12	94743271	94743450	+	0	NA	Intergenic	Intergenic	-91038	NR_030171	574449		NR_030171	ENSG00000283998	MIR492	MIRN492|hsa-mir-492	microRNA 492	ncRNA
27739	chr10	35131851	35132650	+	0	NA	intron (NM_183060, intron 1 of 5)	intron (NM_183060, intron 1 of 5)	4793	NM_183060	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
9387	chr1	47335971	47336330	+	0	NA	intron (NM_001136140, intron 1 of 4)	Alu|SINE|Alu	2360	NM_016308	51727		NM_016308	ENSG00000162368	CMPK1	CK|CMK|CMPK|UMK|UMP-CMPK|UMPK	cytidine/uridine monophosphate kinase 1	protein-coding
201912	chr6	151380191	151381850	+	0	NA	intron (NM_020861, intron 1 of 2)	intron (NM_020861, intron 1 of 2)	10539	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
138284	chr2	203708351	203708450	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	1761	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
77899	chr15	89140671	89141100	+	0	NA	intron (NM_152924, intron 3 of 10)	MamRep137|DNA|TcMar-Tigger	52429	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
204135	chr7	2353151	2353250	+	0	NA	promoter-TSS (NM_001362792)	promoter-TSS (NM_001362792)	-886	NM_001362792	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
153844	chr22	30108401	30109050	+	0	NA	intron (NM_152510, intron 5 of 10)	L2c|LINE|L2	28261	NM_001329458	150280		NM_152510	ENSG00000176635	HORMAD2	CT46.2	HORMA domain containing 2	protein-coding
39167	chr11	57346971	57347130	+	0	NA	intron (NM_002559, intron 2 of 11)	MIRc|SINE|MIR	8698	NM_002559	5024		NM_002559	ENSG00000109991	P2RX3	P2X3	purinergic receptor P2X 3	protein-coding
68104	chr14	75306901	75307200	+	0	NA	Intergenic	ORSL|DNA|hAT-Tip100	12646	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
201283	chr6	144290401	144290950	+	0	NA	Intergenic	L1ME2z|LINE|L1	-1062	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
86995	chr16	68231871	68232550	+	0	NA	intron (NM_001365264, intron 9 of 14)	intron (NM_001365264, intron 9 of 14)	1289	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
97768	chr17	44502951	44504850	+	0	NA	promoter-TSS (NM_001002909)	promoter-TSS (NM_001002909)	-494	NM_001304939	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
130983	chr2	87648001	87648200	+	0	NA	Intergenic	Intergenic	18340	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
133698	chr2	127218721	127219330	+	0	NA	intron (NM_001367502, intron 1 of 8)	CpG	1274	NM_001367502	339761		NM_001001665	ENSG00000186684	CYP27C1	-	cytochrome P450 family 27 subfamily C member 1	protein-coding
198780	chr6	108872101	108872700	+	0	NA	intron (NM_001286609, intron 3 of 16)	intron (NM_001286609, intron 3 of 16)	23978	NM_032131	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
229946	chr9	126673471	126674330	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	59972	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
168560	chr3	148861301	148861500	+	0	NA	Intergenic	Intergenic	-3896	NM_001870	1359		NM_001870	ENSG00000163751	CPA3	MC-CPA	carboxypeptidase A3	protein-coding
23600	chr1	230084301	230084750	+	0	NA	intron (NM_004481, intron 1 of 15)	intron (NM_004481, intron 1 of 15)	17287	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
31462	chr10	96333071	96333450	+	0	NA	intron (NM_001017520, intron 9 of 10)	L1MA7|LINE|L1	23899	NM_001284327	93377		NM_033207	ENSG00000197430	OPALIN	HTMP10|TMEM10|TMP10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding
14758	chr1	146018421	146018680	+	0	NA	exon (NM_213653, exon 4 of 4)	exon (NM_213653, exon 4 of 4)	3185	NM_213652	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
203800	chr7	1266571	1266730	+	0	NA	Intergenic	Intergenic	33778	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
130212	chr2	84654471	84655000	+	0	NA	exon (NM_001370, exon 35 of 77)	exon (NM_001370, exon 35 of 77)	138237	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
216829	chr8	22584271	22584630	+	0	NA	intron (NM_198042, intron 2 of 7)	AluJb|SINE|Alu	3975	NM_001368120	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
52926	chr12	57249121	57249380	+	0	NA	exon (NM_001286256, exon 2 of 11)	exon (NM_001286256, exon 2 of 11)	1937	NM_145064	246329		NM_145064	ENSG00000185482	STAC3	CMYP13|MYPBB|NAM	SH3 and cysteine rich domain 3	protein-coding
161619	chr3	43224601	43225100	+	0	NA	Intergenic	MER57E1|LTR|ERV1	-61662	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
105645	chr18	1407071	1407330	+	0	NA	Intergenic	AluY|SINE|Alu	-47571	NR_023926	56651		NM_031416		LINC00470	C18orf2	long intergenic non-protein coding RNA 470	ncRNA
191710	chr6	13674571	13674730	+	0	NA	intron (NM_005493, intron 2 of 13)	LTR3B_|LTR|ERVK	37185	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
185562	chr5	131374251	131374750	+	0	NA	intron (NM_001038702, intron 2 of 4)	AluSg4|SINE|Alu	110447	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
37911	chr11	34104071	34104480	+	0	NA	Intergenic	L2a|LINE|L2	-1354	NM_001144030	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
86960	chr16	68128821	68129550	+	0	NA	intron (NM_173165, intron 3 of 9)	AluJr|SINE|Alu	43815	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
28023	chr10	43207801	43208000	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	21839	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
200914	chr6	139140521	139141050	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	5705	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
226594	chr9	73151321	73152080	+	0	NA	promoter-TSS (NM_000700)	promoter-TSS (NM_000700)	-165	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
232756	chr9	136665351	136666330	+	0	NA	promoter-TSS (NM_201446)	promoter-TSS (NM_201446)	72	NM_201446	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
25006	chr10	3221871	3222380	+	0	NA	Intergenic	Intergenic	-26889	NR_164118	105376353		NR_164118		LOC105376353	-	mucin-5AC-like	ncRNA
168689	chr3	150610101	150610330	+	0	NA	intron (NM_016275, intron 1 of 5)	intron (NM_016275, intron 1 of 5)	6894	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
127503	chr2	42285371	42285730	+	0	NA	intron (NM_019063, intron 9 of 22)	MIR|SINE|MIR	74488	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
66147	chr14	60271421	60271680	+	0	NA	intron (NM_177951, intron 2 of 3)	intron (NM_177951, intron 2 of 3)	22329	NM_021003	5494		NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
159759	chr3	16288671	16289300	+	0	NA	intron (NM_001352980, intron 6 of 9)	MIR|SINE|MIR	23773	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
24411	chr1	243325321	243325600	+	0	NA	intron (NM_001350251, intron 12 of 20).2	intron (NM_001350251, intron 12 of 20).2	-20716	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
187726	chr5	143417471	143417700	+	0	NA	intron (NM_001018075, intron 1 of 8)	MIRb|SINE|MIR	-12230	NM_001364180	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
97539	chr17	44063501	44064080	+	0	NA	intron (NM_001369486, intron 1 of 3)	intron (NM_001369486, intron 1 of 3)	2881	NM_001369484	124801		NM_152344	ENSG00000161654	LSM12	PNAS-135	LSM12 homolog	protein-coding
65314	chr14	50095751	50096850	+	0	NA	intron (NR_131171, intron 1 of 8)	intron (NR_131171, intron 1 of 8)	8743	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
77656	chr15	85507371	85507730	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	-112400	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
168717	chr3	150740971	150741480	+	0	NA	TTS (NM_005067)	TTS (NM_005067)	-2240	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
178319	chr4	145621571	145621730	+	0	NA	intron (NM_001375644, intron 1 of 6)	intron (NM_001375644, intron 1 of 6)	2265	NM_172250	166785		NM_172250	ENSG00000151611	MMAA	cblA	metabolism of cobalamin associated A	protein-coding
563	chr1	1255221	1255780	+	0	NA	intron (NM_194457, intron 5 of 5)	intron (NM_194457, intron 5 of 5)	-8778	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
11956	chr1	93907551	93907930	+	0	NA	intron (NM_002061, intron 1 of 6)	intron (NM_002061, intron 1 of 6)	1690	NM_002061	2730		NM_002061	ENSG00000023909	GCLM	GLCLR	glutamate-cysteine ligase modifier subunit	protein-coding
4576	chr1	22065451	22065880	+	0	NA	intron (NM_044472, intron 1 of 5)	MIRb|SINE|MIR	12956	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
161787	chr3	45041701	45042080	+	0	NA	Intergenic	Intergenic	11747	NM_001308394	7123		NM_003278	ENSG00000163815	CLEC3B	MCDR4|TN|TNA	C-type lectin domain family 3 member B	protein-coding
192494	chr6	24963871	24964230	+	0	NA	intron (NM_001286446, intron 1 of 13)	FLAM_A|SINE|Alu	-28090	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
95002	chr17	32363271	32363700	+	0	NA	intron (NM_001098507, intron 7 of 11)	MLT1L|LTR|ERVL-MaLR	13328	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
220263	chr8	97682971	97683330	+	0	NA	intron (NM_178812, intron 2 of 11)	AluSc8|SINE|Alu	38966	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
96731	chr17	41675821	41676080	+	0	NA	Intergenic	LTR26C|LTR|ERV1	-12935	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
58310	chr12	130880051	130881150	+	0	NA	Intergenic	Intergenic	8534	NM_006325	5901		NM_006325	ENSG00000132341	RAN	ARA24|Gsp1|TC4	RAN, member RAS oncogene family	protein-coding
74326	chr15	58472901	58473930	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	25320	NR_120338	101928694		NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA
2825	chr1	11051951	11052300	+	0	NA	Intergenic	AluSx|SINE|Alu	-4886	NM_006610	10747		NM_006610	ENSG00000009724	MASP2	MAP-2|MAP19|MASP-2|MASP1P1|sMAP	MBL associated serine protease 2	protein-coding
46267	chr11	124761321	124762600	+	0	NA	promoter-TSS (NR_120579)	promoter-TSS (NR_120579)	330	NM_138961	90952		NM_138961	ENSG00000149564	ESAM	NEDIHSS|W117m	endothelial cell adhesion molecule	protein-coding
229690	chr9	124652421	124652680	+	0	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	-5886	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
22745	chr1	224356371	224358100	+	0	NA	intron (NR_102347, intron 1 of 3)	CpG	356	NM_014184	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
184073	chr5	93577601	93577800	+	0	NA	intron (NR_109818, intron 1 of 6)	intron (NR_109818, intron 1 of 6)	3620	NR_109824	441094		NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
185475	chr5	131289221	131291050	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluJr|SINE|Alu	26082	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
106046	chr18	8807351	8807650	+	0	NA	intron (NM_015210, intron 11 of 16)	intron (NM_015210, intron 11 of 16)	90119	NM_015210	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
129196	chr2	68198721	68199550	+	0	NA	intron (NM_000945, intron 2 of 5)	AluSc8|SINE|Alu	41247	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
171389	chr3	196178501	196178700	+	0	NA	Intergenic	AluSc|SINE|Alu	32800	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
191567	chr6	11901001	11901430	+	0	NA	Intergenic	L1MC1|LINE|L1	100029	NR_125853	101928253		NR_125853	ENSG00000225102	LOC101928253	-	uncharacterized LOC101928253	ncRNA
57859	chr12	123340601	123340800	+	0	NA	intron (NM_018183, intron 5 of 31)	intron (NM_018183, intron 5 of 31)	24143	NR_107039	102466877		NR_107039	ENSG00000284425	MIR8072	hsa-mir-8072	microRNA 8072	ncRNA
64240	chr14	23099321	23099600	+	0	NA	exon (NM_001354640, exon 16 of 16)	exon (NM_001354640, exon 16 of 16)	-3846	NM_001164815	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
2527	chr1	9715201	9716200	+	0	NA	exon (NM_005026, exon 4 of 24)	exon (NM_005026, exon 4 of 24)	24233	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
33154	chr10	112471901	112472330	+	0	NA	intron (NM_001365710, intron 3 of 7)	intron (NM_001365710, intron 3 of 7)	-24512	NM_001351082	64429		NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|DHHC6|ZNF376	zinc finger DHHC-type palmitoyltransferase 6	protein-coding
230382	chr9	128086021	128086480	+	0	NA	intron (NM_001006641, intron 1 of 9)	AluJr4|SINE|Alu	-5214	NM_001006642	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
71764	chr15	21111771	21112630	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	108923	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
158221	chr22	50269951	50271130	+	0	NA	promoter-TSS (NR_110887)	promoter-TSS (NR_110887)	-160	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
147849	chr20	62802221	62802950	+	0	NA	TTS (NM_018270)	TTS (NM_018270)	-2250	NM_007346	11054		NM_007346	ENSG00000060491	OGFR	-	opioid growth factor receptor	protein-coding
178013	chr4	139313651	139314550	+	0	NA	intron (NM_057175, intron 1 of 19)	Tigger9b|DNA|TcMar-Tigger	-11549	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
159931	chr3	17031171	17031500	+	0	NA	intron (NM_015184, intron 3 of 5)	intron (NM_015184, intron 3 of 5)	98139	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
174953	chr4	49150401	49150600	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	163858	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
180877	chr5	33642021	33642480	+	0	NA	intron (NM_030955, intron 10 of 23)	Charlie10a|DNA|hAT-Charlie	201285	NM_152295	6897		NM_152295	ENSG00000113407	TARS1	TARS|TTD7|ThrRS	threonyl-tRNA synthetase 1	protein-coding
51477	chr12	52069001	52070830	+	0	NA	promoter-TSS (NM_021934)	promoter-TSS (NM_021934)	-59	NM_021934	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
211470	chr7	105102721	105103280	+	0	NA	intron (NM_182931, intron 17 of 26)	MIRc|SINE|MIR	88795	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
92458	chr17	8480321	8481100	+	0	NA	intron (NM_005964, intron 36 of 40)	L2|LINE|L2	44826	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
114655	chr19	13046051	13046150	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	21321	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
171083	chr3	195483521	195483980	+	0	NA	Intergenic	L1MC1|LINE|L1	-40730	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
83942	chr16	29114971	29116250	+	0	NA	intron (NR_003369, intron 16 of 16)	intron (NR_003369, intron 16 of 16)	40768	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
193987	chr6	31741751	31741850	+	0	NA	intron (NM_172165, intron 3 of 24).4	MSTB1|LTR|ERVL-MaLR	1795	NM_172166	4439		NM_002441	ENSG00000204410	MSH5	G7|MUTSH5|NG23|POF13|SPGF74	mutS homolog 5	protein-coding
184379	chr5	98772451	98772550	+	0	NA	intron (NR_033932, intron 1 of 1)	intron (NR_033932, intron 1 of 1)	584	NR_033932	503569		NR_033932	ENSG00000246763	RGMB-AS1	-	RGMB antisense RNA 1	ncRNA
174603	chr4	40264471	40264630	+	0	NA	Intergenic	LTR8|LTR|ERV1	-42635	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
99070	chr17	48946671	48947500	+	0	NA	Intergenic	AluSp|SINE|Alu	-2243	NM_001317192	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
129168	chr2	68122251	68122980	+	0	NA	Intergenic	Intergenic	34912	NM_001256476	116143		NM_138458	ENSG00000243667	DNAAF10	WDR92	dynein axonemal assembly factor 10	protein-coding
236226	chrX	65709301	65710130	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	42061	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
149930	chr21	36260121	36260900	+	0	NA	intron (NM_001320714, intron 23 of 36)	intron (NM_001320714, intron 23 of 36)	-59679	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
45420	chr11	118380101	118380500	+	0	NA	TTS (NR_046369)	TTS (NR_046369)	20700	NM_004788	9354		NM_004788	ENSG00000110344	UBE4A	E4|NEDHMS|UBOX2|UFD2	ubiquitination factor E4A	protein-coding
135141	chr2	157443171	157443330	+	0	NA	intron (NM_004288, intron 1 of 7)	MIR|SINE|MIR	839	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
177161	chr4	108142851	108143630	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	23557	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
148220	chr20	63587551	63588330	+	0	NA	3' UTR (NM_012384, exon 10 of 10)	3' UTR (NM_012384, exon 10 of 10)	-13701	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
26777	chr10	22987151	22987430	+	0	NA	intron (NM_173081, intron 10 of 18)	intron (NM_173081, intron 10 of 18)	59237	NM_001282746	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
104882	chr17	81875371	81875530	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4113	NM_001301240	396		NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
116844	chr19	18597921	18598980	+	0	NA	exon (NM_004750, exon 4 of 9)	exon (NM_004750, exon 4 of 9)	8349	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
114905	chr19	13930771	13931130	+	0	NA	TTS (NM_001146255)	TTS (NM_001146255)	7467	NM_001370095	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
76352	chr15	74489471	74490350	+	0	NA	Intergenic	Intergenic	28645	NR_120377	440288		NR_038448	ENSG00000247240	UBL7-DT	UBL7-AS1	UBL7 divergent transcript	ncRNA
176406	chr4	89029401	89030000	+	0	NA	intron (NM_014883, intron 1 of 23)	intron (NM_014883, intron 1 of 23)	27485	NM_014883	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
133666	chr2	127067771	127068700	+	0	NA	exon (NM_001320640, exon 7 of 16)	exon (NM_001320640, exon 7 of 16)	13830	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
235991	chrX	54124551	54124650	+	0	NA	intron (NM_017848, intron 9 of 15)	L1HS|LINE|L1	58654	NM_001300788	54954		NM_017848	ENSG00000184083	FAM120C	CXorf17|ORF34	family with sequence similarity 120 member C	protein-coding
131857	chr2	98694901	98695480	+	0	NA	intron (NM_012214, intron 2 of 15)	AluSz6|SINE|Alu	-31717	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
201859	chr6	150418971	150419430	+	0	NA	Intergenic	Intergenic	50188	NR_134655	389434		NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
183208	chr5	76171571	76172480	+	0	NA	intron (NM_014979, intron 2 of 12)	SVA_F|Retroposon|SVA	88642	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
233160	chr9	137177571	137177730	+	0	NA	intron (NM_013366, intron 10 of 12)	MLT1C-int|LTR|ERVL-MaLR	-5594	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
68092	chr14	75289671	75290500	+	0	NA	Intergenic	Intergenic	-4319	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
145492	chr20	43942651	43943230	+	0	NA	intron (NM_001098796, intron 1 of 8)	intron (NM_001098796, intron 1 of 8)	-2956	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
69517	chr14	96178001	96178200	+	0	NA	Intergenic	Intergenic	-26739	NM_000623	624		NM_000623	ENSG00000168398	BDKRB2	B2R|BK-2|BK2|BKR2|BRB2	bradykinin receptor B2	protein-coding
40719	chr11	64802061	64805000	+	0	NA	promoter-TSS (NM_001307990)	promoter-TSS (NM_001307990)	-316	NM_001307990	5871		NM_004579	ENSG00000168067	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
155762	chr22	39227101	39227430	+	0	NA	intron (NM_033016, intron 5 of 6)	AluSz|SINE|Alu	13644	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
30787	chr10	84358651	84359000	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	30236	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
160804	chr3	33000771	33001330	+	0	NA	intron (NM_000404, intron 15 of 15)	(CTCTCT)n|Simple_repeat|Simple_repeat	49406	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
44408	chr11	103735671	103735830	+	0	NA	Intergenic	Intergenic	-114156	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
3889	chr1	17046121	17046850	+	0	NA	intron (NM_003000, intron 1 of 7)	L1ME1|LINE|L1	7547	NM_003000	6390		NM_003000	ENSG00000117118	SDHB	CWS2|IP|MC2DN4|PGL4|PPGL4|SDH|SDH1|SDH2|SDHIP	succinate dehydrogenase complex iron sulfur subunit B	protein-coding
157526	chr22	45414651	45414830	+	0	NA	intron (NM_015653, intron 2 of 6)	intron (NM_015653, intron 2 of 6)	1047	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
98685	chr17	47878421	47878680	+	0	NA	Intergenic	Intergenic	17266	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
44160	chr11	96208821	96209280	+	0	NA	intron (NM_032427, intron 1 of 4)	MER5A1|DNA|hAT-Charlie	-132388	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
189559	chr5	174951171	174951480	+	0	NA	intron (NR_046113, intron 2 of 2)	intron (NR_046113, intron 2 of 2)	44406	NR_046113	441116		NM_001004348	ENSG00000204754	LINC01951	-	long intergenic non-protein coding RNA 1951	ncRNA
39879	chr11	62485551	62486050	+	0	NA	intron (NM_024060, intron 5 of 5)	AluSx3|SINE|Alu	59864	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
124864	chr2	8281971	8283330	+	0	NA	intron (NR_152741, intron 8 of 9)	MLT2B2|LTR|ERVL	45769	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
163910	chr3	52535451	52535550	+	0	NA	promoter-TSS (NM_022908)	promoter-TSS (NM_022908)	-473	NM_022908	64943		NM_022908	ENSG00000168268	NT5DC2	-	5'-nucleotidase domain containing 2	protein-coding
174704	chr4	42626351	42627080	+	0	NA	intron (NM_001105529, intron 2 of 35)	intron (NM_001105529, intron 2 of 35)	30390	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
100930	chr17	64473871	64474850	+	0	NA	TTS (NM_001369493)	TTS (NM_001369493)	22694	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
62175	chr13	97367201	97367600	+	0	NA	intron (NM_001382690, intron 9 of 9)	intron (NM_001382690, intron 9 of 9)	-66769	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
44195	chr11	96271371	96271530	+	0	NA	intron (NM_032427, intron 1 of 4)	THE1C|LTR|ERVL-MaLR	-69988	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
88632	chr16	85628871	85629030	+	0	NA	intron (NM_001278184, intron 1 of 14)	MSTB|LTR|ERVL-MaLR	15628	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
9336	chr1	46613651	46614530	+	0	NA	intron (NM_201403, intron 1 of 3)	intron (NM_201403, intron 1 of 3)	1043	NM_145279	148932		NM_145279	ENSG00000142961	MOB3C	MOB1E|MOBKL2C	MOB kinase activator 3C	protein-coding
88415	chr16	84687521	84687800	+	0	NA	Intergenic	Intergenic	-12340	NR_073577	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
233019	chr9	137017851	137018350	+	0	NA	intron (NM_212533, intron 14 of 48)	CpG-29179	-9364	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
103017	chr17	76938951	76939050	+	0	NA	intron (NM_144677, intron 12 of 16)	intron (NM_144677, intron 12 of 16)	30199	NR_136416	105371899		NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA
32019	chr10	101009621	101009880	+	0	NA	intron (NM_001195263, intron 15 of 16)	AluSp|SINE|Alu	7253	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
236077	chrX	56762171	56763100	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-25051	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
42087	chr11	67504001	67504700	+	0	NA	intron (NM_001130848, intron 1 of 23)	CpG	1013	NM_004910	9600		NM_004910	ENSG00000110697	PITPNM1	DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9	phosphatidylinositol transfer protein membrane associated 1	protein-coding
152726	chr22	21665351	21667000	+	0	NA	intron (NM_148175, intron 1 of 20)	CpG	163	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
106079	chr18	9122451	9123030	+	0	NA	intron (NM_021074, intron 5 of 7)	intron (NM_021074, intron 5 of 7)	13980	NR_110771	101927275		NR_110771	ENSG00000266053	NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
198852	chr6	109372321	109372780	+	0	NA	intron (NM_001142401, intron 3 of 4)	intron (NM_001142401, intron 3 of 4)	9189	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
109727	chr19	1085721	1086240	+	0	NA	TTS (NM_002695)	TTS (NM_002695)	9346	NM_001282334	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
131351	chr2	96167121	96167980	+	0	NA	Intergenic	L1MB7|LINE|L1	-22110	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
160037	chr3	18432851	18433350	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	5636	NM_001131010	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
129072	chr2	65082601	65082850	+	0	NA	intron (NM_015147, intron 6 of 6)	intron (NM_015147, intron 6 of 6)	26309	NM_015147	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
115740	chr19	16268421	16269080	+	0	NA	Intergenic	Intergenic	-56076	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
223963	chr9	1930221	1930500	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-84987	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
74096	chr15	52789571	52789730	+	0	NA	exon (NM_004498, exon 1 of 2)	exon (NM_004498, exon 1 of 2)	686	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
96120	chr17	39645221	39645480	+	0	NA	intron (NM_001165938, intron 1 of 13)	MIRb|SINE|MIR	8206	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
1362	chr1	2504701	2505480	+	0	NA	exon (NM_014638, exon 22 of 22)	exon (NM_014638, exon 22 of 22)	21506	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
75815	chr15	69394321	69395100	+	0	NA	intron (NM_017705, intron 6 of 8)	intron (NM_017705, intron 6 of 8)	-19639	NR_160295	9493		NM_004856	ENSG00000137807	KIF23	CDA3|CDAIII|CDAN3|CDAN3A|CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
6814	chr1	30930651	30931350	+	0	NA	TTS (NM_001020658)	TTS (NM_001020658)	4776	NR_033295	692235		NR_033295		SNORD103B	U103B	small nucleolar RNA, C/D box 103B	snoRNA
188141	chr5	150403471	150403630	+	0	NA	intron (NR_157074, intron 4 of 6)	intron (NR_157074, intron 4 of 6)	9206	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
180371	chr5	7306751	7306930	+	0	NA	promoter-TSS (NR_033906)	promoter-TSS (NR_033906)	-126	NR_033906	442132		NM_001034846		LOC442132	-	golgin A6 family-like 1 pseudogene	pseudo
133283	chr2	113541301	113542400	+	0	NA	intron (NR_146439, intron 1 of 3)	CpG	379	NR_146439	729468		NR_146438		PGM5P4	-	phosphoglucomutase 5 pseudogene 4	pseudo
34604	chr10	133268301	133268750	+	0	NA	intron (NM_001164490, intron 17 of 19)	intron (NM_001164490, intron 17 of 19)	8343	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
39661	chr11	61681401	61681600	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	1109	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
227335	chr9	89454501	89456300	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	24490	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
114532	chr19	12837221	12837580	+	0	NA	Intergenic	Intergenic	-1115	NM_014975	22983		NM_014975	ENSG00000105613	MAST1	MCCCHCM|SAST	microtubule associated serine/threonine kinase 1	protein-coding
158843	chr3	9806701	9807200	+	0	NA	3' UTR (NM_001024960, exon 6 of 6)	3' UTR (NM_001024960, exon 6 of 6)	-2965	NM_001025930	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
59636	chr13	28136521	28137130	+	0	NA	TTS (NR_029383)	TTS (NR_029383)	-1720	NM_175854	255967		NM_175854	ENSG00000152520	PAN3	-	poly(A) specific ribonuclease subunit PAN3	protein-coding
170116	chr3	183181751	183182050	+	0	NA	intron (NM_015078, intron 27 of 29)	intron (NM_015078, intron 27 of 29)	-19166	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
217055	chr8	23381671	23381850	+	0	NA	intron (NM_002318, intron 1 of 13)	intron (NM_002318, intron 1 of 13)	22360	NM_002318	4017		NM_002318	ENSG00000134013	LOXL2	LOR|LOR2|WS9-14	lysyl oxidase like 2	protein-coding
133912	chr2	130336721	130337450	+	0	NA	TTS (NM_001321118)	TTS (NM_001321118)	5079	NM_032357	84317		NM_032357	ENSG00000136710	CCDC115	CDG2O|ccp1	coiled-coil domain containing 115	protein-coding
140727	chr2	234444071	234444430	+	0	NA	TTS (NR_146988)	TTS (NR_146988)	10345	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
92810	chr17	16014071	16014630	+	0	NA	intron (NM_017775, intron 7 of 9)	intron (NM_017775, intron 7 of 9)	14526	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
213761	chr7	140525651	140526200	+	0	NA	intron (NM_001362678, intron 15 of 19)	intron (NM_001362678, intron 15 of 19)	-46356	NM_001145125	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
112378	chr19	6056971	6057730	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	53150	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
2575	chr1	9799401	9801000	+	0	NA	intron (NM_014944, intron 1 of 17)	L1MCa|LINE|L1	23765	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
206972	chr7	38309271	38309930	+	0	NA	Intergenic	Intergenic	-31977	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
80402	chr16	2593521	2594350	+	0	NA	intron (NM_001261816, intron 11 of 11)	intron (NM_001261816, intron 11 of 11)	-9449	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
3359	chr1	15586851	15587150	+	0	NA	Intergenic	Intergenic	-1949	NM_024758	79814		NM_024758	ENSG00000116771	AGMAT	-	agmatinase (putative)	protein-coding
43048	chr11	74232001	74232930	+	0	NA	intron (NM_016147, intron 7 of 13)	intron (NM_016147, intron 7 of 13)	61176	NM_001271593	51400		NM_016147	ENSG00000214517	PPME1	ABDH19|PME-1	protein phosphatase methylesterase 1	protein-coding
213490	chr7	139052321	139052780	+	0	NA	intron (NM_020119, intron 12 of 12)	AluSp|SINE|Alu	-8393	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
4826	chr1	23618051	23618150	+	0	NA	Intergenic	L2|LINE|L2	-9234	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
26257	chr10	14659271	14660180	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-55324	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
70996	chr14	104723571	104726230	+	0	NA	intron (NM_152328, intron 1 of 12)	intron (NM_152328, intron 1 of 12)	671	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
203214	chr6	167997021	167997280	+	0	NA	promoter-TSS (NR_103750)	promoter-TSS (NR_103750)	-73	NR_103750	100505879		NM_014354	ENSG00000229921	KIF25-AS1	C6orf54|HGC6.1.1|NCRNA00300	KIF25 antisense RNA 1	ncRNA
28393	chr10	47552551	47554230	+	0	NA	non-coding (NR_160415, exon 1 of 16)	non-coding (NR_160415, exon 1 of 16)	110	NR_160414	113939912		NR_160414		BMS1P2-AGAP9	-	BMS1P2-AGAP9 readthrough	pseudo
136274	chr2	174687921	174688480	+	0	NA	Intergenic	L1MC4a|LINE|L1	-5287	NM_001375835	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
87983	chr16	80606401	80606800	+	0	NA	intron (NM_152342, intron 6 of 6)	intron (NM_152342, intron 6 of 6)	-33792	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
229979	chr9	126803371	126804130	+	0	NA	Intergenic	Intergenic	-1256	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
19222	chr1	172539871	172540230	+	0	NA	intron (NM_001282751, intron 1 of 21)	MIR|SINE|MIR	6900	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
176094	chr4	82905021	82905780	+	0	NA	intron (NM_024672, intron 2 of 4)	intron (NM_024672, intron 2 of 4)	-4484	NR_034076	100499177		NR_034075	ENSG00000251022	THAP9-AS1	-	THAP9 antisense RNA 1	ncRNA
29799	chr10	72292221	72292700	+	0	NA	Intergenic	Intergenic	18536	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
94227	chr17	28654651	28654950	+	0	NA	intron (NM_006923, intron 2 of 2)	AluSx3|SINE|Alu	7106	NM_006923	6388		NM_006923	ENSG00000132581	SDF2	-	stromal cell derived factor 2	protein-coding
170634	chr3	187030651	187031580	+	0	NA	intron (NM_003032, intron 1 of 6)	intron (NM_003032, intron 1 of 6)	-7603	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
68322	chr14	77551321	77551600	+	0	NA	intron (NM_004863, intron 9 of 11)	intron (NM_004863, intron 9 of 11)	-52644	NM_182509	145501		NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2	protein-coding
180908	chr5	34193001	34193600	+	0	NA	non-coding (NR_157803, exon 1 of 1)	non-coding (NR_157803, exon 1 of 1)	3719	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
18080	chr1	160667301	160667700	+	0	NA	Intergenic	L1MC4|LINE|L1	-20189	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
128885	chr2	64115771	64116330	+	0	NA	intron (NM_020651, intron 1 of 6)	intron (NM_020651, intron 1 of 6)	28370	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
156256	chr22	40408271	40408750	+	0	NA	intron (NM_001350047, intron 15 of 20)	intron (NM_001350047, intron 15 of 20)	37916	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
167135	chr3	127754371	127755080	+	0	NA	intron (NM_001003794, intron 3 of 7)	intron (NM_001003794, intron 3 of 7)	68157	NM_007283	11343		NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
141453	chr2	241047701	241047900	+	0	NA	intron (NM_001080437, intron 8 of 31)	intron (NM_001080437, intron 8 of 31)	49182	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
112901	chr19	7636521	7637850	+	0	NA	promoter-TSS (NR_073560)	promoter-TSS (NR_073560)	75	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
122954	chr19	50726551	50727050	+	0	NA	Intergenic	Intergenic	3436	NM_002975	6320		NM_002975	ENSG00000105472	CLEC11A	CLECSF3|LSLCL|P47|SCGF	C-type lectin domain containing 11A	protein-coding
61038	chr13	48222621	48223330	+	0	NA	Intergenic	Intergenic	-10231	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
60736	chr13	44373671	44374230	+	0	NA	non-coding (NR_144535, exon 1 of 4)	non-coding (NR_144535, exon 1 of 4)	108	NR_144535	387923		NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
79839	chr16	1444271	1444800	+	0	NA	promoter-TSS (NM_001143980)	promoter-TSS (NM_001143980)	-46	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
23479	chr1	228626501	228626830	+	0	NA	promoter-TSS (NR_023363).8	promoter-TSS (NR_023363).8	-638	NR_023368	100169757		NR_023368	ENSG00000200624	RNA5S6	RN5S6	RNA, 5S ribosomal 6	rRNA
160210	chr3	23918571	23918730	+	0	NA	intron (NM_001253379, intron 3 of 3)	intron (NM_001253379, intron 3 of 3)	1518	NM_001253383	6138		NM_002948	ENSG00000174748	RPL15	DBA12|EC45|L15|RPL10|RPLY10|RPYL10|eL15	ribosomal protein L15	protein-coding
238251	chrX	147911371	147912780	+	0	NA	promoter-TSS (NR_024499)	promoter-TSS (NR_024499)	124	NM_001185075	2332		NM_002024	ENSG00000102081	FMR1	FMRP|FRAXA|POF|POF1	fragile X messenger ribonucleoprotein 1	protein-coding
104750	chr17	81686271	81686780	+	0	NA	intron (NM_004712, intron 3 of 21)	intron (NM_004712, intron 3 of 21)	2514	NM_004712	9146		NM_004712	ENSG00000185359	HGS	HRS	hepatocyte growth factor-regulated tyrosine kinase substrate	protein-coding
138562	chr2	207632821	207633330	+	0	NA	Intergenic	L2b|LINE|L2	-7022	NM_001330133	151194		NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase 21A, HSPA lysine	protein-coding
123362	chr19	53888421	53888950	+	0	NA	intron (NM_001316329, intron 3 of 18)	intron (NM_001316329, intron 3 of 18)	6488	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
180658	chr5	17528121	17528400	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-36184	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
81698	chr16	11237801	11238200	+	0	NA	Intergenic	AluSz|SINE|Alu	18182	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
208778	chr7	73567921	73568180	+	0	NA	3' UTR (NM_001362662, exon 8 of 8)	3' UTR (NM_001362662, exon 8 of 8)	10337	NM_001362663	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
2877	chr1	11480101	11480700	+	0	NA	intron (NM_020780, intron 1 of 20)	CpG	1245	NM_020780	57540		NM_020780	ENSG00000204624	DISP3	PTCHD2	dispatched RND transporter family member 3	protein-coding
139744	chr2	229864851	229865150	+	0	NA	intron (NM_001348327, intron 2 of 41)	intron (NM_001348327, intron 2 of 41)	56679	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
122604	chr19	49775621	49776230	+	0	NA	intron (NM_014203, intron 1 of 23)	MLT1L|LTR|ERVL-MaLR	8924	NM_014203	160		NM_014203	ENSG00000196961	AP2A1	ADTAA|AP2-ALPHA|CLAPA1	adaptor related protein complex 2 subunit alpha 1	protein-coding
112651	chr19	6858971	6859130	+	0	NA	Intergenic	Intergenic	-28529	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
145985	chr20	46363751	46364950	+	0	NA	promoter-TSS (NM_001281457)	promoter-TSS (NM_001281457)	75	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
5256	chr1	25027051	25027530	+	0	NA	Intergenic	Intergenic	3787	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
103230	chr17	77493171	77493850	+	0	NA	intron (NM_001293697, intron 8 of 9)	MLT1C|LTR|ERVL-MaLR	17875	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
153434	chr22	25067471	25069010	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	40266	NM_001145206	85379		NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding
121815	chr19	47930371	47930750	+	0	NA	Intergenic	(ACA)n|Simple_repeat|Simple_repeat	1742	NR_024219	100170223		NR_024219		SNAR-C5	-	small NF90 (ILF3) associated RNA C5	snRNA
142428	chr20	3905901	3906100	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluSx1|SINE|Alu	-11494	NR_029519	406896		NR_029519	ENSG00000199024	MIR103A2	MIR103-2|MIRN103-2|mir-103a-2	microRNA 103a-2	ncRNA
99463	chr17	50149601	50150500	+	0	NA	exon (NM_032595, exon 1 of 10)	exon (NM_032595, exon 1 of 10)	627	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
66349	chr14	61451071	61451430	+	0	NA	intron (NM_006255, intron 6 of 13)	intron (NM_006255, intron 6 of 13)	118944	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
14278	chr1	143638101	143638730	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	61204	NR_104078	101954269		NR_104078	ENSG00000207349	RNVU1-17	RNU1-127|vU1.17	RNA, variant U1 small nuclear 17	snRNA
41500	chr11	66250321	66250850	+	0	NA	Intergenic	L2b|LINE|L2	-6709	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
24150	chr1	235855751	235856300	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	-2965	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
106373	chr18	13282351	13283130	+	0	NA	intron (NM_001378099, intron 2 of 6)	THE1A-int|LTR|ERVL-MaLR	5378	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207443	chr7	44567401	44567600	+	0	NA	intron (NM_019082, intron 12 of 13)	intron (NM_019082, intron 12 of 13)	7038	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
184346	chr5	96968771	96968930	+	0	NA	intron (NM_175920, intron 1 of 17)	intron (NM_175920, intron 1 of 17)	10417	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
228513	chr9	100354101	100354800	+	0	NA	Intergenic	L2a|LINE|L2	-1508	NM_017746	54881		NM_017746	ENSG00000136891	TEX10	Ipi1|bA208F1.2	testis expressed 10	protein-coding
233313	chr9	137413701	137414100	+	0	NA	intron (NM_017820, intron 1 of 21)	L1MB7|LINE|L1	9262	NM_017820	54932		NM_017820	ENSG00000187609	EXD3	Nbr|mut-7	exonuclease 3'-5' domain containing 3	protein-coding
210157	chr7	98254671	98254830	+	0	NA	Intergenic	MER4A|LTR|ERV1	-2518	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
192006	chr6	16331251	16331650	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	92863	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
170733	chr3	188178651	188179030	+	0	NA	non-coding (NR_024413, exon 1 of 1)	non-coding (NR_024413, exon 1 of 1)	297	NR_024413	401105		NM_207488	ENSG00000279891	FLJ42393	AVPC1948	uncharacterized LOC401105	ncRNA
36897	chr11	10781421	10781680	+	0	NA	Intergenic	Intergenic	20058	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
182526	chr5	65564521	65565050	+	0	NA	intron (NM_001278926, intron 2 of 11)	L2c|LINE|L2	1489	NM_015342	23398		NM_015342	ENSG00000113593	PPWD1	-	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding
166697	chr3	120560571	120561630	+	0	NA	Intergenic	Intergenic	-35236	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
190287	chr5	179576971	179577450	+	0	NA	intron (NM_001040452, intron 6 of 17).2	AluSx4|SINE|Alu	17479	NM_001040451	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
54744	chr12	93783821	93784130	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	-46152	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
120180	chr19	42261201	42261400	+	0	NA	Intergenic	AluSg|SINE|Alu	-6172	NM_001312656	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
19675	chr1	180926371	180926730	+	0	NA	intron (NM_020950, intron 3 of 8)	intron (NM_020950, intron 3 of 8)	13653	NM_020950	57710		NM_020950	ENSG00000135835	KIAA1614	-	KIAA1614	protein-coding
47445	chr12	3727301	3727550	+	0	NA	intron (NM_032680, intron 2 of 10)	intron (NM_032680, intron 2 of 10)	25684	NM_032680	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
122703	chr19	49928901	49931000	+	0	NA	promoter-TSS (NM_012346)	promoter-TSS (NM_012346)	-254	NM_001290746	22809		NM_012068	ENSG00000169136	ATF5	ATFX|HMFN0395	activating transcription factor 5	protein-coding
139643	chr2	226715551	226715650	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-56807	NR_049887	100847053		NR_049887	ENSG00000263363	MIR5702	-	microRNA 5702	ncRNA
220686	chr8	101243771	101244000	+	0	NA	Intergenic	Intergenic	-37821	NM_001267709	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
172863	chr4	3299501	3299700	+	0	NA	Intergenic	Intergenic	-14547	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
237556	chrX	120664171	120664350	+	0	NA	Intergenic	Intergenic	-34110	NM_152692	29071		NM_152692	ENSG00000171155	C1GALT1C1	AHUS8|C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS	C1GALT1 specific chaperone 1	protein-coding
221583	chr8	125337901	125338100	+	0	NA	intron (NR_146191, intron 6 of 8)	intron (NR_146191, intron 6 of 8)	-92358	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
19714	chr1	181095171	181095830	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	6800	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
8790	chr1	42925621	42925880	+	0	NA	3' UTR (NM_006516, exon 10 of 10)	3' UTR (NM_006516, exon 10 of 10)	33118	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
103384	chr17	78144051	78144780	+	0	NA	Intergenic	Intergenic	-1970	NM_001163075	100141515		NM_001163075	ENSG00000187997	C17orf99	IL-40|UNQ464	chromosome 17 open reading frame 99	protein-coding
138475	chr2	206785071	206785230	+	0	NA	intron (NM_014929, intron 7 of 11)	THE1B|LTR|ERVL-MaLR	-1842	NR_036077	100422993		NR_036077	ENSG00000283469	MIR3130-1	MIR3130-3|mir-3130-1	microRNA 3130-1	ncRNA
131678	chr2	97714741	97715550	+	0	NA	intron (NM_001079, intron 2 of 13)	intron (NM_001079, intron 2 of 13)	1263	NM_001378594	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
147876	chr20	62829621	62830530	+	0	NA	intron (NM_001853, intron 22 of 31)	intron (NM_001853, intron 22 of 31)	13025	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
164833	chr3	71017951	71018350	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	46774	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
99181	chr17	49453071	49453230	+	0	NA	Intergenic	MIR3|SINE|MIR	8599	NR_110805	101927207		NR_110805	ENSG00000249497	LINC02075	-	long intergenic non-protein coding RNA 2075	ncRNA
88602	chr16	85600301	85600500	+	0	NA	Intergenic	Intergenic	-11009	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
192581	chr6	25946751	25947130	+	0	NA	Intergenic	AluJb|SINE|Alu	-15862	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
173251	chr4	6988571	6988730	+	0	NA	intron (NM_001286805, intron 1 of 11)	intron (NM_001286805, intron 1 of 11)	1142	NM_001286805	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
30852	chr10	86536371	86537100	+	0	NA	Intergenic	CpG	-14943	NM_015045	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
3429	chr1	15853001	15853400	+	0	NA	intron (NM_015001, intron 1 of 14)	AluSx|SINE|Alu	-5053	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
55844	chr12	109091901	109092100	+	0	NA	intron (NM_001145374, intron 2 of 3)	MER5A|DNA|hAT-Charlie	1472	NM_001145374	121642		NM_001001655	ENSG00000189046	ALKBH2	ABH2	alkB homolog 2, alpha-ketoglutarate dependent dioxygenase	protein-coding
156550	chr22	41436421	41437680	+	0	NA	exon (NM_016272, exon 2 of 2)	exon (NM_016272, exon 2 of 2)	9751	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
158876	chr3	9878471	9878630	+	0	NA	intron (NM_001199551, intron 1 of 6)	intron (NM_001199551, intron 1 of 6)	262	NM_001199623	63924		NM_022094	ENSG00000187288	CIDEC	CIDE-3|CIDE3|FPLD5|FSP27	cell death inducing DFFA like effector c	protein-coding
27217	chr10	28668651	28669230	+	0	NA	Intergenic	CpG	-8581	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
159753	chr3	16267271	16267500	+	0	NA	intron (NM_001352980, intron 1 of 9)	L2a|LINE|L2	2173	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
168683	chr3	150604921	150605650	+	0	NA	intron (NM_016275, intron 1 of 5)	intron (NM_016275, intron 1 of 5)	1964	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
174731	chr4	42750051	42750350	+	0	NA	Intergenic	Intergenic	-93095	NM_001105529	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
127509	chr2	42293021	42293700	+	0	NA	intron (NM_019063, intron 11 of 22)	AluJr4|SINE|Alu	66678	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
6005	chr1	27010821	27011300	+	0	NA	intron (NM_052943, intron 1 of 1)	intron (NM_052943, intron 1 of 1)	1790	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
162761	chr3	49063071	49063230	+	0	NA	intron (NM_001320580, intron 3 of 10)	intron (NM_001320580, intron 3 of 10)	30482	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
165608	chr3	101680051	101681000	+	0	NA	TTS (NM_000986)	TTS (NM_000986)	-3393	NM_014415	27107		NM_014415	ENSG00000066422	ZBTB11	MRT69|ZNF-U69274|ZNF913	zinc finger and BTB domain containing 11	protein-coding
61173	chr13	49124271	49124880	+	0	NA	intron (NM_001079673, intron 4 of 25)	intron (NM_001079673, intron 4 of 25)	14258	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
74927	chr15	63733471	63733630	+	0	NA	intron (NM_003922, intron 13 of 77)	intron (NM_003922, intron 13 of 77)	100398	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
162490	chr3	48566901	48567130	+	0	NA	exon (NM_000094, exon 111 of 119)	exon (NM_000094, exon 111 of 119)	-3234	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
11357	chr1	89620371	89621680	+	0	NA	Intergenic	Intergenic	11869	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
160516	chr3	30641721	30642380	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	35449	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
236871	chrX	81120271	81121200	+	0	NA	intron (NM_030763, intron 2 of 6)	intron (NM_030763, intron 2 of 6)	81178	NM_030763	79366		NM_030763	ENSG00000198157	HMGN5	NBP-45|NSBP1	high mobility group nucleosome binding domain 5	protein-coding
99888	chr17	56754821	56755080	+	0	NA	Intergenic	Intergenic	78970	NM_001085430	339210		NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
217967	chr8	38320951	38321050	+	0	NA	intron (NM_017778, intron 8 of 9)	intron (NM_017778, intron 8 of 9)	-51768	NM_001354454	84513		NM_032483	ENSG00000147535	PLPP5	DPPL1|HTPAP|PPAPDC1B	phospholipid phosphatase 5	protein-coding
130989	chr2	87741671	87742350	+	0	NA	Intergenic	L2c|LINE|L2	-6077	NM_002665	5342		NM_002665	ENSG00000125551	PLGLB2	PLGLA|PLGLA1|PLGP1|PLGP2|PRGA	plasminogen like B2	protein-coding
103811	chr17	79093071	79094450	+	0	NA	intron (NM_001082575, intron 14 of 14)	intron (NM_001082575, intron 14 of 14)	18936	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
44438	chr11	104764521	104764800	+	0	NA	Intergenic	MIRb|SINE|MIR	134010	NR_034065	100506742		NM_001191016		CASP12	CASP-12|CASP12P1	caspase 12 (gene/pseudogene)	protein-coding
215174	chr7	155667271	155667630	+	0	NA	intron (NM_053043, intron 2 of 17)	L1MC4|LINE|L1	22789	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
146551	chr20	49987971	49988630	+	0	NA	3' UTR (NM_005985, exon 3 of 3)	3' UTR (NM_005985, exon 3 of 3)	5320	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
200987	chr6	139377671	139378230	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-3302	NM_006079	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
112162	chr19	5641151	5641650	+	0	NA	intron (NM_001320571, intron 2 of 18)	intron (NM_001320571, intron 2 of 18)	18317	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
160831	chr3	33060301	33061000	+	0	NA	intron (NM_000404, intron 5 of 15)	intron (NM_000404, intron 5 of 15)	36182	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
15410	chr1	150243701	150243980	+	0	NA	Intergenic	AluSg|SINE|Alu	-7728	NM_001280559	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
16585	chr1	155015671	155016700	+	0	NA	intron (NM_001377451, intron 5 of 5)	intron (NM_001377451, intron 5 of 5)	13383	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
103536	chr17	78644121	78644580	+	0	NA	Intergenic	LTR33|LTR|ERVL	-12293	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
9211	chr1	45624371	45625130	+	0	NA	promoter-TSS (NM_001190182)	promoter-TSS (NM_001190182)	-696	NM_001114938	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
161613	chr3	43219121	43219380	+	0	NA	Intergenic	Intergenic	-67262	NM_001100594	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
216823	chr8	22576751	22577430	+	0	NA	Intergenic	Intergenic	-1651	NM_021630	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
89650	chr16	89348001	89348200	+	0	NA	intron (NR_045839, intron 2 of 9)	AluJb|SINE|Alu	27648	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
165958	chr3	107753551	107753750	+	0	NA	intron (NM_020235, intron 9 of 16)	intron (NM_020235, intron 9 of 16)	124418	NR_024276	151658		NR_015414	ENSG00000241469	LINC00635	-	long intergenic non-protein coding RNA 635	ncRNA
80774	chr16	3185221	3185850	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-2669	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
159654	chr3	15332301	15333200	+	0	NA	promoter-TSS (NM_004844)	promoter-TSS (NM_004844)	-164	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
226481	chr9	71755301	71756050	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	12838	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
199742	chr6	125789501	125790070	+	0	NA	intron (NM_001199619, intron 2 of 16)	intron (NM_001199619, intron 2 of 16)	-1175	NM_001122842	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
168784	chr3	151839001	151839230	+	0	NA	intron (NR_110203, intron 1 of 2)	intron (NR_110203, intron 1 of 2)	24999	NM_001086	13		NM_001086	ENSG00000114771	AADAC	CES5A1|DAC	arylacetamide deacetylase	protein-coding
10729	chr1	76052971	76053130	+	0	NA	Intergenic	Intergenic	-21696	NM_001349109	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
220269	chr8	97732321	97732580	+	0	NA	Intergenic	AluSx3|SINE|Alu	-43338	NM_018407	55353		NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
143622	chr20	31740271	31740700	+	0	NA	intron (NM_012112, intron 1 of 17)	intron (NM_012112, intron 1 of 17)	1195	NM_012112	22974		NM_012112	ENSG00000088325	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2 microtubule nucleation factor	protein-coding
9682	chr1	52910201	52910600	+	0	NA	intron (NM_001319958, intron 4 of 9)	AluSx1|SINE|Alu	11340	NM_018281	55268		NM_018281	ENSG00000121310	ECHDC2	-	enoyl-CoA hydratase domain containing 2	protein-coding
6495	chr1	28502251	28502550	+	0	NA	Intergenic	L2|LINE|L2	-3543	NR_002909	8420		NR_002909	ENSG00000242125	SNHG3	NCRNA00014|RNU17C|RNU17D|U17HG|U17HG-A|U17HG-AB	small nucleolar RNA host gene 3	ncRNA
184079	chr5	93584021	93585930	+	0	NA	5' UTR (NM_005654, exon 1 of 3)	5' UTR (NM_005654, exon 1 of 3)	1753	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
198564	chr6	107026801	107027000	+	0	NA	Intergenic	AluSz|SINE|Alu	-1299	NM_001142470	51250		NM_016487	ENSG00000130349	MTRES1	C6orf203|HSPC230|PRED31	mitochondrial transcription rescue factor 1	protein-coding
68840	chr14	91286351	91287430	+	0	NA	intron (NM_001080414, intron 25 of 29)	MIRb|SINE|MIR	-33010	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
171383	chr3	196146271	196146430	+	0	NA	intron (NR_034088, intron 2 of 2)	LTR8B|LTR|ERV1	3714	NR_034088	401109		NM_001001699	ENSG00000224652	LINC00885	-	long intergenic non-protein coding RNA 885	ncRNA
70027	chr14	100096921	100097180	+	0	NA	intron (NM_016337, intron 2 of 13)	intron (NM_016337, intron 2 of 13)	12464	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
80615	chr16	2966101	2966350	+	0	NA	exon (NM_024507, exon 3 of 8)	exon (NM_024507, exon 3 of 8)	1950	NM_172229	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
60223	chr13	40508951	40509330	+	0	NA	Intergenic	MIR|SINE|MIR	-28134	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
182220	chr5	56852051	56852800	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	36876	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
161714	chr3	43759371	43759730	+	0	NA	Intergenic	Intergenic	-67956	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
159904	chr3	16905901	16906180	+	0	NA	intron (NM_001144382, intron 1 of 5)	ORSL|DNA|hAT-Tip100	21085	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
52327	chr12	54977171	54977330	+	0	NA	promoter-TSS (NR_147064)	promoter-TSS (NR_147064)	-187	NR_147064	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
237250	chrX	110189201	110189400	+	0	NA	Intergenic	Intergenic	35760	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
178313	chr4	145482801	145483000	+	0	NA	promoter-TSS (NM_001003688)	promoter-TSS (NM_001003688)	95	NM_001003688	4086		NM_005900	ENSG00000170365	SMAD1	BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1	SMAD family member 1	protein-coding
124635	chr2	1752871	1753030	+	0	NA	Intergenic	Intergenic	-8435	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
2151	chr1	8404571	8404930	+	0	NA	intron (NM_001042682, intron 2 of 12)	intron (NM_001042682, intron 2 of 12)	19082	NM_001042682	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
230082	chr9	127502921	127503250	+	0	NA	non-coding (NR_168891, exon 26 of 26)	non-coding (NR_168891, exon 26 of 26)	50830	NM_001005374	90678		NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
108555	chr18	74652401	74652680	+	0	NA	intron (NM_001384475, intron 3 of 8)	intron (NM_001384475, intron 3 of 8)	21577	NM_001146190	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
171089	chr3	195491301	195491700	+	0	NA	Intergenic	Intergenic	-48480	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
81112	chr16	4374801	4375550	+	0	NA	intron (NM_138440, intron 1 of 1)	intron (NM_138440, intron 1 of 1)	3327	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
222265	chr8	133287401	133287800	+	0	NA	intron (NM_001374844, intron 1 of 15)	intron (NM_001374844, intron 1 of 15)	9090	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
174609	chr4	40281071	40281630	+	0	NA	Intergenic	MIRc|SINE|MIR	-25835	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
184373	chr5	97548071	97548230	+	0	NA	intron (NR_105028, intron 2 of 3)	MIRc|SINE|MIR	43454	NR_105028	102546227		NR_105028	ENSG00000250331	LINC01340	-	long intergenic non-protein coding RNA 1340	ncRNA
82516	chr16	17529971	17530550	+	0	NA	Intergenic	Intergenic	-59300	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
106346	chr18	13136701	13137600	+	0	NA	Intergenic	CpG	-80532	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207476	chr7	44628851	44629380	+	0	NA	intron (NM_001363523, intron 2 of 23)	intron (NM_001363523, intron 2 of 23)	22488	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
196272	chr6	42962671	42963030	+	0	NA	non-coding (NR_134891, exon 2 of 4)	non-coding (NR_134891, exon 2 of 4)	2096	NM_001318865	27232		NM_018960	ENSG00000124713	GNMT	HEL-S-182mP	glycine N-methyltransferase	protein-coding
135428	chr2	161162971	161163580	+	0	NA	intron (NM_001199135, intron 1 of 7)	intron (NM_001199135, intron 1 of 7)	2847	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
96701	chr17	41419771	41420030	+	0	NA	TTS (NM_003770).2	TTS (NM_003770).2	4685	NM_003770	8688		NM_003770	ENSG00000108417	KRT37	HA7|K37|KRTHA7	keratin 37	protein-coding
190800	chr6	1313121	1313750	+	0	NA	exon (NM_033260, exon 1 of 1)	exon (NM_033260, exon 1 of 1)	1337	NM_033260	94234		NM_033260	ENSG00000164379	FOXQ1	HFH1	forkhead box Q1	protein-coding
72441	chr15	31867651	31868250	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	2723	NM_001382637	161725		NM_130901	ENSG00000169918	OTUD7A	C15orf16|C16ORF15|CEZANNE2|NEDHS|OTUD7	OTU deubiquitinase 7A	protein-coding
21743	chr1	206829001	206829850	+	0	NA	intron (NM_013371, intron 1 of 6)	intron (NM_013371, intron 1 of 6)	548	NM_013371	29949		NM_013371	ENSG00000142224	IL19	IL-10C|MDA1|NG.1|ZMDA1	interleukin 19	protein-coding
13578	chr1	116151051	116151500	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	39520	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
95032	chr17	32489551	32489650	+	0	NA	3' UTR (NM_003885, exon 2 of 2)	3' UTR (NM_003885, exon 2 of 2)	2607	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
147843	chr20	62795101	62795800	+	0	NA	Intergenic	CpG	-1023	NM_018270	55257		NM_018270	ENSG00000101189	MRGBP	C20orf20|Eaf7|MRG15BP|URCC4	MRG domain binding protein	protein-coding
174959	chr4	49156351	49156450	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	169758	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
193914	chr6	31632151	31632850	+	0	NA	exon (NM_080686, exon 16 of 31).2	exon (NM_080686, exon 16 of 31).2	-1287	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
178019	chr4	139359171	139359330	+	0	NA	intron (NM_057175, intron 11 of 19)	AluSx|SINE|Alu	-56699	NM_001184987	4717		NM_002494	ENSG00000109390	NDUFC1	KFYI	NADH:ubiquinone oxidoreductase subunit C1	protein-coding
2485	chr1	9674571	9676030	+	0	NA	intron (NR_126367, intron 1 of 1)	AluYi6_4d|SINE|Alu	12274	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
57246	chr12	121561471	121561630	+	0	NA	intron (NM_001005366, intron 4 of 22)	intron (NM_001005366, intron 4 of 22)	18696	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
202828	chr6	159725121	159725450	+	0	NA	intron (NM_001322817, intron 3 of 7)	AluSx|SINE|Alu	1665	NM_001322820	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
139676	chr2	227065521	227065650	+	0	NA	intron (NM_000092, intron 25 of 47)	L1PA3|LINE|L1	98620	NM_000092	1286		NM_000092	ENSG00000081052	COL4A4	ATS2|BFH|BFH1|CA44	collagen type IV alpha 4 chain	protein-coding
20292	chr1	197141551	197142050	+	0	NA	intron (NM_018136, intron 3 of 27)	intron (NM_018136, intron 3 of 27)	4869	NM_018136	259266		NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	assembly factor for spindle microtubules	protein-coding
130548	chr2	85693851	85694950	+	0	NA	promoter-TSS (NM_012483)	promoter-TSS (NM_012483)	42	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
85085	chr16	33015051	33015350	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-130058	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
28940	chr10	63211671	63212550	+	0	NA	intron (NM_001322258, intron 7 of 24)	L1MB2|LINE|L1	57113	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
56443	chr12	113591551	113591650	+	0	NA	Intergenic	CpG	119597	NR_126425	104355219		NR_126425		LHX5-AS1	locus 4010|locus4010	LHX5 antisense RNA 1	ncRNA
239170	chrY	12391751	12392130	+	0	NA	Intergenic	MER31A|LTR|ERV1	29650	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
205725	chr7	23484801	23485200	+	0	NA	Intergenic	AluJb|SINE|Alu	-5388	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
97509	chr17	43927971	43928650	+	0	NA	Intergenic	Intergenic	-9951	NR_136406	107546764		NR_136406	ENSG00000261514	LINC01976	-	long intergenic non-protein coding RNA 1976	ncRNA
123178	chr19	52292271	52292830	+	0	NA	3' UTR (NM_001010851, exon 4 of 4)	3' UTR (NM_001010851, exon 4 of 4)	-4619	NM_144684	147657		NM_144684	ENSG00000198464	ZNF480	-	zinc finger protein 480	protein-coding
74674	chr15	62052771	62052930	+	0	NA	intron (NM_017684, intron 1 of 82)	intron (NM_017684, intron 1 of 82)	7597	NM_017684	54832		NM_017684	ENSG00000129003	VPS13C	BLTP5C|PARK23	vacuolar protein sorting 13 homolog C	protein-coding
36248	chr11	3758351	3758650	+	0	NA	intron (NM_001365128, intron 10 of 32)	intron (NM_001365128, intron 10 of 32)	39046	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
144145	chr20	34028571	34028930	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-20369	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
215402	chr7	157502761	157503750	+	0	NA	Intergenic	Intergenic	37024	NR_110157	101927914		NR_110157	ENSG00000234210	LOC101927914	-	uncharacterized LOC101927914	ncRNA
54185	chr12	79044971	79045170	+	0	NA	promoter-TSS (NM_001135806)	promoter-TSS (NM_001135806)	-622	NM_001135806	6857		NM_005639	ENSG00000067715	SYT1	BAGOS|P65|SVP65|SYT	synaptotagmin 1	protein-coding
93527	chr17	19032101	19032900	+	0	NA	intron (NM_006613, intron 3 of 4)	intron (NM_006613, intron 3 of 4)	14457	NM_006613	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
25036	chr10	3760201	3760400	+	0	NA	Intergenic	Intergenic	24909	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
74715	chr15	63123471	63123880	+	0	NA	intron (NM_171846, intron 2 of 4)	LTR13|LTR|ERVK	1814	NM_001288585	114294		NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
20561	chr1	198716771	198717030	+	0	NA	intron (NM_002838, intron 13 of 32)	intron (NM_002838, intron 13 of 32)	77860	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
198105	chr6	90293501	90294200	+	0	NA	intron (NM_021813, intron 1 of 8)	AmnSINE1|SINE|5S-Deu-L2	2993	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
201853	chr6	150302221	150302480	+	0	NA	Intergenic	Intergenic	-66662	NM_203395	389434		NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
70199	chr14	100549251	100549430	+	0	NA	intron (NM_001385101, intron 1 of 5)	intron (NM_001385101, intron 1 of 5)	-1213	NM_001385104	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
177535	chr4	118772051	118772380	+	0	NA	intron (NM_014822, intron 8 of 22)	intron (NM_014822, intron 8 of 22)	63911	NM_001318066	9871		NM_014822	ENSG00000150961	SEC24D	CLCRP2	SEC24 homolog D, COPII coat complex component	protein-coding
23630	chr1	230281671	230281830	+	0	NA	3' UTR (NM_004481, exon 16 of 16)	3' UTR (NM_004481, exon 16 of 16)	144582	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
132985	chr2	111506001	111506200	+	0	NA	Intergenic	Intergenic	-10939	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
138854	chr2	216635121	216635380	+	0	NA	intron (NM_000597, intron 1 of 3)	intron (NM_000597, intron 1 of 3)	1830	NM_000597	3485		NM_000597	ENSG00000115457	IGFBP2	IBP2|IGF-BP53	insulin like growth factor binding protein 2	protein-coding
187140	chr5	140533221	140534250	+	0	NA	intron (NM_020690, intron 29 of 35)	AluJb|SINE|Alu	-13927	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
189553	chr5	174453801	174455000	+	0	NA	intron (NR_125806, intron 2 of 5)	AluSx3|SINE|Alu	118046	NR_125806	101928176		NR_125806	ENSG00000249306	LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA
186750	chr5	139311871	139312250	+	0	NA	intron (NM_199189, intron 5 of 17)	AluSx|SINE|Alu	18310	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
90296	chr17	1052121	1052780	+	0	NA	intron (NM_001282149, intron 9 of 17).3	intron (NM_001282149, intron 9 of 17).3	-20619	NM_001256847	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
223969	chr9	2013551	2013930	+	0	NA	Intergenic	Intergenic	-1607	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
91584	chr17	5225571	5226430	+	0	NA	intron (NR_152840, intron 5 of 5)	MER21A|LTR|ERVL	8860	NM_001319190	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
103084	chr17	77326451	77327230	+	0	NA	intron (NM_006640, intron 1 of 10)	MER21B|LTR|ERVL	7325	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
231732	chr9	131839201	131840330	+	0	NA	Intergenic	Intergenic	-99689	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
120705	chr19	45176751	45177100	+	0	NA	intron (NM_001270891, intron 1 of 5)	AluSc8|SINE|Alu	1312	NM_024108	79090		NM_024108	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex subunit 6A	protein-coding
66291	chr14	61392301	61392780	+	0	NA	intron (NM_006255, intron 2 of 13)	L1ME2|LINE|L1	71097	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
34353	chr10	132203821	132204280	+	0	NA	intron (NM_006426, intron 13 of 13)	intron (NM_006426, intron 13 of 13)	17102	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
39746	chr11	61827351	61828400	+	0	NA	promoter-TSS (NM_004265)	promoter-TSS (NM_004265)	-425	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
8793	chr1	42927971	42928480	+	0	NA	intron (NM_006516, intron 8 of 9)	intron (NM_006516, intron 8 of 9)	30643	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
177902	chr4	129089221	129090200	+	0	NA	intron (NM_001300898, intron 1 of 5)	L1PA7|LINE|L1	3829	NM_144643	132320		NM_144643	ENSG00000151466	SCLT1	CAP-1A|CAP1A	sodium channel and clathrin linker 1	protein-coding
170865	chr3	192819171	192819530	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	-91809	NM_001377293	2257		NM_004113	ENSG00000114279	FGF12	DEE47|EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding
70397	chr14	101965201	101966550	+	0	NA	intron (NM_001376, intron 1 of 77)	intron (NM_001376, intron 1 of 77)	1302	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
18878	chr1	168135701	168137580	+	0	NA	promoter-TSS (NM_001267613)	promoter-TSS (NM_001267613)	67	NM_001267613	23432		NM_007369	ENSG00000143147	GPR161	RE2	G protein-coupled receptor 161	protein-coding
181625	chr5	47718551	47718650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-2022220	NM_021072	348980		NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|DEE24|EIEE24|GEFSP10|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
188428	chr5	154265221	154265480	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	74617	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
192306	chr6	21588351	21588650	+	0	NA	Intergenic	CpG	-5251	NM_003107	6659		NM_003107	ENSG00000124766	SOX4	CSS10|EVI16	SRY-box transcription factor 4	protein-coding
233013	chr9	137015301	137015500	+	0	NA	intron (NM_212533, intron 24 of 48)	intron (NM_212533, intron 24 of 48)	-12064	NM_207511	401563		NM_207511	ENSG00000180539	LINC02908	C9orf139	long intergenic non-protein coding RNA 2908	ncRNA
52097	chr12	54127971	54128130	+	0	NA	intron (NR_026656, intron 1 of 1)	intron (NR_026656, intron 1 of 1)	1979	NR_026656	400043		NR_026656	ENSG00000250742	LINC02381	HMS|lncEPAT	long intergenic non-protein coding RNA 2381	ncRNA
106073	chr18	9116251	9117590	+	0	NA	intron (NM_021074, intron 1 of 7)	intron (NM_021074, intron 1 of 7)	14221	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
154177	chr22	31323651	31324300	+	0	NA	Intergenic	AluJr4|SINE|Alu	-11374	NR_110542	101929760		NR_110542	ENSG00000228839	PIK3IP1-DT	PIK3IP1-AS1	PIK3IP1 divergent transcript	ncRNA
41530	chr11	66276851	66277100	+	0	NA	3' UTR (NM_030981, exon 6 of 6)	3' UTR (NM_030981, exon 6 of 6)	-1200	NM_182553	254263		NM_182553	ENSG00000174871	CNIH2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding
37623	chr11	20360501	20361100	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-2885	NM_006410	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
219771	chr8	81106251	81107510	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	5188	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
194585	chr6	33432071	33432680	+	0	NA	intron (NM_006772, intron 4 of 18).2	intron (NM_006772, intron 4 of 18).2	-5956	NR_049800	100847012		NR_049800	ENSG00000284256	MIR5004	mir-5004	microRNA 5004	ncRNA
184046	chr5	91379601	91380500	+	0	NA	promoter-TSS (NM_001329671)	promoter-TSS (NM_001329671)	47	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
121198	chr19	46571571	46571800	+	0	NA	intron (NM_001370550, intron 1 of 2)	intron (NM_001370550, intron 1 of 2)	29231	NM_001370551	100506012		NM_001205281	ENSG00000291145	PPP5D1P	PPP5D1	PPP5 tetratricopeptide repeat domain containing 1, pseudogene	pseudo
236520	chrX	72094901	72095650	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	36640	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
164765	chr3	69094001	69094950	+	0	NA	intron (NM_006407, intron 1 of 2)	intron (NM_006407, intron 1 of 2)	9538	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
177652	chr4	121243451	121244130	+	0	NA	Intergenic	Intergenic	-16307	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
18171	chr1	160799801	160800000	+	0	NA	exon (NM_002348, exon 2 of 10)	exon (NM_002348, exon 2 of 10)	3726	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
76616	chr15	75448471	75448630	+	0	NA	intron (NM_001145357, intron 1 of 20)	MIRb|SINE|MIR	3140	NM_015477	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
148526	chr20	64104001	64104200	+	0	NA	3' UTR (NM_005286, exon 2 of 2)	3' UTR (NM_005286, exon 2 of 2)	3465	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
172735	chr4	2825301	2825500	+	0	NA	intron (NM_001145856, intron 5 of 12)	intron (NM_001145856, intron 5 of 12)	6586	NM_003023	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
220137	chr8	94854571	94854750	+	0	NA	intron (NM_017864, intron 14 of 26)	intron (NM_017864, intron 14 of 26)	31370	NR_073445	55656		NM_017864	ENSG00000164941	INTS8	C8orf52|INT8|NEDCHS	integrator complex subunit 8	protein-coding
113507	chr19	10100501	10100950	+	0	NA	intron (NM_031917, intron 1 of 5)	L2a|LINE|L2	1932	NM_001321411	83854		NM_031917	ENSG00000130812	ANGPTL6	AGF|ARP5	angiopoietin like 6	protein-coding
53072	chr12	57725121	57725550	+	0	NA	promoter-TSS (NR_027032)	promoter-TSS (NR_027032)	-905	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
22184	chr1	212312071	212312230	+	0	NA	intron (NM_001199756, intron 1 of 12)	Tigger3b|DNA|TcMar-Tigger	10292	NM_001199756	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
170951	chr3	194396901	194397620	+	0	NA	exon (NM_004488, exon 2 of 2)	exon (NM_004488, exon 2 of 2)	2006	NM_004488	2814		NM_004488	ENSG00000178732	GP5	CD42d|GPV	glycoprotein V platelet	protein-coding
221948	chr8	129927971	129928330	+	0	NA	intron (NM_001353279, intron 2 of 13)	L1MB7|LINE|L1	11661	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
17593	chr1	156864451	156864950	+	0	NA	intron (NM_002529, intron 2 of 16)	intron (NM_002529, intron 2 of 16)	3821	NM_002529	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
175838	chr4	78613671	78614030	+	0	NA	Intergenic	MIRb|SINE|MIR	-32144	NR_038308	100505702		NR_038303		LINC01094	CTEPHA1	long intergenic non-protein coding RNA 1094	ncRNA
107424	chr18	46199401	46200350	+	0	NA	intron (NM_145055, intron 1 of 4)	MLT2F|LTR|ERVL	25841	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
229973	chr9	126773101	126773300	+	0	NA	Intergenic	Intergenic	-31806	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
108632	chr18	76452201	76452400	+	0	NA	intron (NM_014643, intron 2 of 6)	intron (NM_014643, intron 2 of 6)	-39352	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
123062	chr19	51362021	51362300	+	0	NA	intron (NM_001985, intron 1 of 5)	(AC)n|Simple_repeat|Simple_repeat	4228	NM_001985	2109		NM_001985	ENSG00000105379	ETFB	FP585|MADD	electron transfer flavoprotein subunit beta	protein-coding
122631	chr19	49822021	49822880	+	0	NA	intron (NM_030973, intron 3 of 17)	AluJb|SINE|Alu	4161	NM_030973	81857		NM_030973	ENSG00000104973	MED25	ACID1|ARC92|BVSYS|CMT2B2|P78|PTOV2|TCBAP0758	mediator complex subunit 25	protein-coding
157220	chr22	43196551	43196650	+	0	NA	TTS (NM_173050)	TTS (NM_173050)	-9466	NM_015140	23170		NM_015140	ENSG00000100304	TTLL12	dJ526I14.2	tubulin tyrosine ligase like 12	protein-coding
36951	chr11	11137351	11137650	+	0	NA	Intergenic	Intergenic	215750	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
168298	chr3	141526021	141526280	+	0	NA	intron (NM_006506, intron 3 of 23)	MIRb|SINE|MIR	39123	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
98827	chr17	48412851	48414580	+	0	NA	intron (NM_001075099, intron 1 of 12)	intron (NM_001075099, intron 1 of 12)	16499	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
153401	chr22	24803971	24804200	+	0	NA	Intergenic	Intergenic	-2126	NM_001098497	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
66562	chr14	63276801	63277080	+	0	NA	intron (NM_020663, intron 2 of 4)	intron (NM_020663, intron 2 of 4)	41995	NM_145171	122876		NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone subunit beta 5	protein-coding
61008	chr13	48068151	48068330	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-8897	NR_046511	100873965		NR_046511	ENSG00000229111	MED4-AS1	MED4-AS	MED4 antisense RNA 1	ncRNA
203287	chr6	169810251	169810550	+	0	NA	Intergenic	Intergenic	-11575	NR_026781	401288		NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
133289	chr2	113582401	113582850	+	0	NA	TTS (NR_031632)	TTS (NR_031632)	471	NR_031632	100302128		NR_031632	ENSG00000221055	MIR1302-3	MIRN1302-3|hsa-mir-1302-3	microRNA 1302-3	ncRNA
185854	chr5	132494201	132495170	+	0	NA	Intergenic	Intergenic	-3912	NM_001354925	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
143400	chr20	29327421	29328100	+	0	NA	Intergenic	CpG	89201	NR_037925	647476		NR_037925		FRG2EP	-	FSHD region gene 2 family member E, pseudogene	pseudo
60706	chr13	44055651	44055950	+	0	NA	Intergenic	MER4C|LTR|ERV1	33465	NR_026955	121838		NR_026955		NRAD1	LINC00284|NCRNA00284	non-coding RNA in the aldehyde dehydrogenase 1A pathway	ncRNA
178160	chr4	142356601	142357500	+	0	NA	intron (NM_001385334, intron 6 of 24)	MER21C|LTR|ERVL	46083	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
170601	chr3	186954301	186954980	+	0	NA	intron (NM_173216, intron 1 of 7)	L1PA10|LINE|L1	24114	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
79809	chr16	1409571	1410400	+	0	NA	intron (NM_001372107, intron 2 of 14)	AluSx|SINE|Alu	4719	NM_001372107	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
158849	chr3	9814771	9814930	+	0	NA	intron (NM_001366051, intron 4 of 12)	MIR|SINE|MIR	4588	NR_037162	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
147221	chr20	57394471	57394850	+	0	NA	intron (NM_001291780, intron 4 of 4)	intron (NM_001291780, intron 4 of 4)	-1604	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
112934	chr19	7691221	7691900	+	0	NA	intron (NM_002002, intron 8 of 10)	intron (NM_002002, intron 8 of 10)	7919	NM_001207019	2208		NM_002002	ENSG00000104921	FCER2	BLAST-2|CD23|CD23A|CLEC4J|FCE2|FCErII|IGEBF	Fc epsilon receptor II	protein-coding
49724	chr12	31322721	31322980	+	0	NA	intron (NM_021238, intron 1 of 6)	intron (NM_021238, intron 1 of 6)	-1466	NR_026806	79857		NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
90485	chr17	1397601	1397900	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	2472	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
176394	chr4	88792271	88792630	+	0	NA	intron (NM_001265578, intron 1 of 16)	intron (NM_001265578, intron 1 of 16)	30911	NM_001265578	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
77588	chr15	85200071	85200830	+	0	NA	Intergenic	Intergenic	34331	NR_158179	101929479		NR_158179		LOC101929479	-	golgin A2 pseudogene	pseudo
80254	chr16	2217171	2217850	+	0	NA	Intergenic	Intergenic	-2670	NM_001042371	283871		NM_001042371	ENSG00000184207	PGP	AUM|G3PP|PGPase	phosphoglycolate phosphatase	protein-coding
168266	chr3	141452051	141452500	+	0	NA	Intergenic	Intergenic	-34752	NM_001303246	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
38165	chr11	36288901	36289880	+	0	NA	promoter-TSS (NM_001307937)	promoter-TSS (NM_001307937)	34	NM_001307932	29099		NM_014186	ENSG00000110442	COMMD9	C11orf55|HSPC166|LINC00610	COMM domain containing 9	protein-coding
199411	chr6	116645401	116645900	+	0	NA	intron (NR_154589, intron 10 of 10)	intron (NR_154589, intron 10 of 10)	23116	NM_145062	221302		NM_145062	ENSG00000153975	ZUP1	C6orf113|DUB|ZUFSP	zinc finger containing ubiquitin peptidase 1	protein-coding
132492	chr2	105987821	105988080	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-77738	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
52129	chr12	54206101	54206530	+	0	NA	Intergenic	Intergenic	-17321	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
224261	chr9	6009601	6009800	+	0	NA	Intergenic	Intergenic	-1218	NM_001017969	158358		NM_001017969	ENSG00000183354	BRD10	KIAA2026	bromodomain containing 10	protein-coding
80432	chr16	2640571	2640730	+	0	NA	non-coding (NR_024492, exon 1 of 1)	non-coding (NR_024492, exon 1 of 1)	1668	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
112078	chr19	5335601	5335800	+	0	NA	intron (NM_130853, intron 1 of 28)	intron (NM_130853, intron 1 of 28)	5112	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
97421	chr17	43457871	43458430	+	0	NA	Intergenic	Intergenic	13344	NR_031751	100313779		NR_031751	ENSG00000284344	MIR2117	-	microRNA 2117	ncRNA
59606	chr13	27712551	27712650	+	0	NA	Intergenic	Intergenic	-79883	NM_145657	219409		NM_145657	ENSG00000169840	GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
217355	chr8	27835921	27836180	+	0	NA	intron (NM_001278945, intron 1 of 7)	intron (NM_001278945, intron 1 of 7)	1767	NM_001278945	55872		NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
124552	chr2	429571	430600	+	0	NA	Intergenic	Intergenic	62570	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
212910	chr7	130902401	130902930	+	0	NA	intron (NR_110472, intron 2 of 3)	L2c|LINE|L2	10645	NR_110472	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
227035	chr9	83961751	83962050	+	0	NA	Intergenic	AluSg|SINE|Alu	-4914	NM_001317997	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
38190	chr11	36376101	36376600	+	0	NA	intron (NM_001160168, intron 1 of 5)	(GGA)n|Simple_repeat|Simple_repeat	365	NM_024841	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
141459	chr2	241056971	241057330	+	0	NA	intron (NM_001080437, intron 16 of 31)	AluSq2|SINE|Alu	45137	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
77312	chr15	82429971	82430800	+	0	NA	promoter-TSS (NM_001291420).2	promoter-TSS (NM_001291420).2	-398	NM_001291420	440295		NM_198181	ENSG00000197978	GOLGA6L9	GOLGA6L20	golgin A6 family like 9	protein-coding
4486	chr1	21621301	21621500	+	0	NA	intron (NM_001350524, intron 5 of 27)	intron (NM_001350524, intron 5 of 27)	30498	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
205892	chr7	25114901	25115430	+	0	NA	Intergenic	AluSx|SINE|Alu	10095	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
4361	chr1	20702521	20702780	+	0	NA	intron (NM_020816, intron 5 of 14)	L2c|LINE|L2	15357	NM_020816	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
180071	chr5	1099251	1099350	+	0	NA	intron (NM_006598, intron 1 of 23).2	CpG	12763	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
34634	chr10	133312251	133312350	+	0	NA	promoter-TSS (NR_046330)	promoter-TSS (NR_046330)	37	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
134981	chr2	152635571	152635930	+	0	NA	intron (NM_052905, intron 21 of 25)	intron (NM_052905, intron 21 of 25)	81711	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
33067	chr10	110881971	110882430	+	0	NA	intron (NM_145341, intron 4 of 12)	intron (NM_145341, intron 4 of 12)	10272	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
167561	chr3	129397451	129397880	+	0	NA	promoter-TSS (NR_002992)	promoter-TSS (NR_002992)	-317	NR_002992	677797		NR_002992	ENSG00000207088	SNORA7B	ACA7B	small nucleolar RNA, H/ACA box 7B	snoRNA
113886	chr19	10674801	10675050	+	0	NA	intron (NM_153464, intron 4 of 17)	intron (NM_153464, intron 4 of 17)	20579	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
209647	chr7	77800301	77800600	+	0	NA	intron (NM_001366086, intron 1 of 17)	intron (NM_001366086, intron 1 of 17)	1479	NM_001366087	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
139649	chr2	226794951	226795330	+	0	NA	exon (NM_005544, exon 1 of 2)	exon (NM_005544, exon 1 of 2)	4680	NM_005544	3667		NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
122709	chr19	49936251	49936800	+	0	NA	Intergenic	MER92B|LTR|ERV1	3461	NR_039906	100616483		NR_039906	ENSG00000283842	MIR4751	-	microRNA 4751	ncRNA
63540	chr14	19054971	19055130	+	0	NA	Intergenic	Intergenic	-7322	NR_110526	503639		NM_001013701		DUXAP10	LNMAT1	double homeobox A pseudogene 10	pseudo
221589	chr8	125428071	125428530	+	0	NA	Intergenic	Intergenic	-2058	NM_025195	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
172869	chr4	3309751	3310300	+	0	NA	Intergenic	Intergenic	-4122	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
15151	chr1	148935601	148936150	+	0	NA	intron (NM_001198834, intron 4 of 43)	L1PREC2|LINE|L1	6734	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
11159	chr1	86933551	86933950	+	0	NA	intron (NM_001134492, intron 1 of 4)	L1MCb|LINE|L1	19115	NM_012262	9653		NM_012262	ENSG00000153936	HS2ST1	NFSRA|dJ604K5.2	heparan sulfate 2-O-sulfotransferase 1	protein-coding
164839	chr3	71031271	71031430	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	33574	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
152140	chr22	19979601	19979800	+	0	NA	intron (NM_001670, intron 6 of 19)	intron (NM_001670, intron 6 of 19)	15947	NR_039918	100616414		NR_039918	ENSG00000284031	MIR4761	-	microRNA 4761	ncRNA
197781	chr6	87672901	87673500	+	0	NA	Intergenic	AluSz6|SINE|Alu	29033	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
129372	chr2	68790651	68791100	+	0	NA	intron (NM_001364819, intron 4 of 10)	L2a|LINE|L2	15965	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
186882	chr5	139543201	139544130	+	0	NA	Intergenic	Intergenic	-17501	NM_181838	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
160337	chr3	27713771	27714470	+	0	NA	Intergenic	Intergenic	8203	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
142141	chr20	2748771	2749130	+	0	NA	intron (NR_138537, intron 8 of 17)	intron (NR_138537, intron 8 of 17)	51677	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
190214	chr5	178228171	178228330	+	0	NA	intron (NM_153373, intron 3 of 12)	L2c|LINE|L2	4552	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
40551	chr11	64321121	64321930	+	0	NA	intron (NM_181651, intron 4 of 4)	intron (NM_181651, intron 4 of 4)	-2929	NM_001372071	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
131051	chr2	88350721	88351200	+	0	NA	Intergenic	CpG	101733	NM_001135649	344167		NM_001135649	ENSG00000214336	FOXI3	CFM2	forkhead box I3	protein-coding
115126	chr19	14369351	14370200	+	0	NA	Intergenic	Intergenic	-5785	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
221660	chr8	125953121	125953380	+	0	NA	Intergenic	MER92-int|LTR|ERV1	-2053	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
106379	chr18	13296751	13297250	+	0	NA	intron (NM_001378099, intron 2 of 6)	MIRb|SINE|MIR	19638	NM_001378099	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
207449	chr7	44576301	44576500	+	0	NA	Intergenic	Intergenic	-1862	NM_019082	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
216241	chr8	12206271	12206430	+	0	NA	Intergenic	Intergenic	-12217	NR_148876	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
56819	chr12	120220921	120221380	+	0	NA	intron (NM_001080855, intron 6 of 11)	intron (NM_001080855, intron 6 of 11)	19859	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
175467	chr4	72702201	72702480	+	0	NA	Intergenic	Intergenic	-133119	NM_014243	9508		NM_014243	ENSG00000156140	ADAMTS3	ADAMTS-4|HKLLS3	ADAM metallopeptidase with thrombospondin type 1 motif 3	protein-coding
137447	chr2	196981321	196981580	+	0	NA	Intergenic	L2a|LINE|L2	-54743	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
236377	chrX	71067571	71068890	+	0	NA	exon (NM_001256187, exon 1 of 3)	exon (NM_001256187, exon 1 of 3)	104	NM_013346	29934		NM_013346	ENSG00000147164	SNX12	-	sorting nexin 12	protein-coding
215620	chr7	159207421	159207680	+	0	NA	Intergenic	LTR34|LTR|ERV1	-62593	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
49212	chr12	15910701	15912050	+	0	NA	promoter-TSS (NM_015954)	promoter-TSS (NM_015954)	43	NM_015954	51071		NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
170739	chr3	188203771	188203930	+	0	NA	intron (NM_001375462, intron 1 of 11)	intron (NM_001375462, intron 1 of 11)	-8862	NM_001375465	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
121166	chr19	46405071	46405230	+	0	NA	Intergenic	Intergenic	8414	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
15858	chr1	151434301	151434900	+	0	NA	intron (NM_207171, intron 1 of 16)	AluSc|SINE|Alu	7605	NM_207171	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
103317	chr17	77914801	77915000	+	0	NA	Intergenic	Intergenic	-30813	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
199597	chr6	119255571	119255800	+	0	NA	intron (NM_005907, intron 5 of 12)	intron (NM_005907, intron 5 of 12)	94076	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
228519	chr9	100412801	100413000	+	0	NA	Intergenic	AluSg|SINE|Alu	-14243	NM_080655	91283		NM_080655	ENSG00000066697	MSANTD3	C9orf30|L8	Myb/SANT DNA binding domain containing 3	protein-coding
233319	chr9	137427651	137428200	+	0	NA	intron (NM_001256068, intron 2 of 11)	intron (NM_001256068, intron 2 of 11)	4530	NM_001256068	10811		NM_006647	ENSG00000188747	NOXA1	NY-CO-31|SDCCAG31|p51NOX	NADPH oxidase activator 1	protein-coding
32822	chr10	109956621	109956980	+	0	NA	intron (NR_038943, intron 2 of 4)	MER58A|DNA|hAT-Charlie	-33247	NM_001167604	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
32993	chr10	110529731	110530650	+	0	NA	Intergenic	CpG	32283	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
169244	chr3	157150071	157150480	+	0	NA	intron (NM_001308185, intron 6 of 10)	intron (NM_001308185, intron 6 of 10)	9872	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
198282	chr6	99746151	99746510	+	0	NA	Intergenic	FLAM_C|SINE|Alu	139497	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
55721	chr12	108299851	108300150	+	0	NA	intron (NM_001142344, intron 1 of 2)	L2c|LINE|L2	20662	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
51729	chr12	53219801	53220600	+	0	NA	exon (NM_001243732, exon 1 of 7)	exon (NM_001243732, exon 1 of 7)	162	NM_001042728	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
130710	chr2	86722501	86722700	+	0	NA	intron (NM_022780, intron 1 of 8)	intron (NM_022780, intron 1 of 8)	-1478	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
195455	chr6	37006021	37007030	+	0	NA	intron (NM_173558, intron 1 of 15)	intron (NM_173558, intron 1 of 15)	870	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
6202	chr1	27459921	27460500	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	29957	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
194053	chr6	31853471	31853630	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	9271	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
126454	chr2	28273721	28274350	+	0	NA	intron (NM_199193, intron 11 of 13)	intron (NM_199193, intron 11 of 13)	36424	NR_038319	100505716		NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
107209	chr18	36128651	36130530	+	0	NA	promoter-TSS (NR_040110)	promoter-TSS (NR_040110)	-196	NM_001099406	25800		NM_012319	ENSG00000141424	SLC39A6	LIV-1|LIV1|ZIP6	solute carrier family 39 member 6	protein-coding
237207	chrX	108090821	108092210	+	0	NA	promoter-TSS (NM_178271)	promoter-TSS (NM_178271)	27	NM_002814	5716		NM_002814	ENSG00000101843	PSMD10	dJ889N15.2|p28|p28(GANK)	proteasome 26S subunit, non-ATPase 10	protein-coding
198913	chr6	110053551	110053900	+	0	NA	Intergenic	Intergenic	75414	NM_005284	2830		NM_005284	ENSG00000146360	GPR6	-	G protein-coupled receptor 6	protein-coding
116401	chr19	17966821	17967800	+	0	NA	intron (NM_002248, intron 2 of 10)	CpG	16008	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
191212	chr6	5580921	5581380	+	0	NA	intron (NM_001374875, intron 5 of 6)	L2a|LINE|L2	114122	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
211035	chr7	102422321	102422580	+	0	NA	intron (NR_038967, intron 8 of 8)	AluSq|SINE|Alu	-11080	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
81248	chr16	4608251	4609000	+	0	NA	TTS (NM_145253)	TTS (NM_145253)	6263	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
26429	chr10	17235221	17235700	+	0	NA	intron (NM_003380, intron 7 of 9)	MIRb|SINE|MIR	-5475	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
149186	chr21	22575201	22575400	+	0	NA	Intergenic	LTR64|LTR|ERV1	476683	NR_038400	54143		NM_153203	ENSG00000184856	LINC00308	C21orf74|NCRNA00308|PRED16	long intergenic non-protein coding RNA 308	ncRNA
73314	chr15	41896451	41897050	+	0	NA	non-coding (NR_135681, exon 3 of 4)	non-coding (NR_135681, exon 3 of 4)	-2697	NM_016642	51332		NM_016642	ENSG00000137877	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin beta, non-erythrocytic 5	protein-coding
124756	chr2	6924601	6925000	+	0	NA	intron (NM_001349184, intron 1 of 8)	intron (NM_001349184, intron 1 of 8)	6006	NM_001349184	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
98446	chr17	46942401	46942950	+	0	NA	TTS (NM_001363851)	TTS (NM_001363851)	19515	NM_001321133	9570		NM_004287	ENSG00000108433	GOSR2	Bos1|EPM6|GS27|MYOS	golgi SNAP receptor complex member 2	protein-coding
123236	chr19	52944471	52944830	+	0	NA	intron (NM_001202473, intron 3 of 3)	LTR5B|LTR|ERVK	-2056	NR_037805	399669		NM_203307	ENSG00000293246	ZNF321P	ZNF321	zinc finger protein 321, pseudogene	pseudo
191983	chr6	16160901	16161300	+	0	NA	Intergenic	Intergenic	19544	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
202104	chr6	154735621	154736200	+	0	NA	intron (NM_001286199, intron 2 of 20)	AluJo|SINE|Alu	2494	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
218152	chr8	41895451	41896250	+	0	NA	intron (NM_001142446, intron 1 of 42)	CpG	891	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
173087	chr4	6260451	6260750	+	0	NA	Intergenic	Intergenic	-9250	NM_001145853	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
221355	chr8	123272051	123272350	+	0	NA	intron (NR_037873, intron 1 of 3)	intron (NR_037873, intron 1 of 3)	2086	NM_001204180	100533106		NM_001204180	ENSG00000259305	ZHX1-C8orf76	-	ZHX1-C8orf76 readthrough	protein-coding
154042	chr22	30572251	30572550	+	0	NA	intron (NM_001318106, intron 1 of 3)	MIRb|SINE|MIR	466	NM_001318108	9514		NM_004861	ENSG00000128242	GAL3ST1	CST	galactose-3-O-sulfotransferase 1	protein-coding
217589	chr8	29532001	29532600	+	0	NA	Intergenic	Intergenic	-181616	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
200569	chr6	136283821	136284150	+	0	NA	intron (NM_001301038, intron 1 of 12)	intron (NM_001301038, intron 1 of 12)	5861	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
12759	chr1	109628251	109629000	+	0	NA	intron (NM_139156, intron 11 of 17)	(CTCAC)n|Simple_repeat|Simple_repeat	4637	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
130567	chr2	85753071	85753230	+	0	NA	promoter-TSS (NM_032827)	promoter-TSS (NM_032827)	-841	NM_032827	84913		NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
55883	chr12	109710721	109711200	+	0	NA	Intergenic	L2c|LINE|L2	-2865	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
146928	chr20	51739071	51739230	+	0	NA	intron (NM_006045, intron 1 of 27)	LTR41B|LTR|ERVL	29240	NM_006045	10079		NM_006045	ENSG00000054793	ATP9A	ATPIIA|NEDGBA	ATPase phospholipid transporting 9A (putative)	protein-coding
14682	chr1	145847721	145848600	+	0	NA	TTS (NM_006099)	TTS (NM_006099)	2485	NR_106794	102466191		NR_106794	ENSG00000278549	MIR6736	hsa-mir-6736	microRNA 6736	ncRNA
72057	chr15	28836201	28836400	+	0	NA	intron (NR_037599, intron 11 of 13)	Cheshire|DNA|hAT-Charlie	12385	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
179629	chr4	186144451	186145480	+	0	NA	promoter-TSS (NM_015398)	promoter-TSS (NM_015398)	78	NM_015398	25854		NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
62253	chr13	98556301	98556630	+	0	NA	intron (NM_001286649, intron 1 of 9)	MLT1K|LTR|ERVL-MaLR	20642	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
165521	chr3	100400371	100402280	+	0	NA	promoter-TSS (NM_001085451)	promoter-TSS (NM_001085451)	-214	NM_001085451	348801		NM_001085451	ENSG00000206535	LNP1	NP3	leukemia NUP98 fusion partner 1	protein-coding
133853	chr2	128291801	128292400	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	26768	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
50357	chr12	47200651	47200950	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	12988	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
137331	chr2	196130201	196130750	+	0	NA	Intergenic	LTR25-int|LTR|ERV1	41103	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
67050	chr14	67677351	67678050	+	0	NA	3' UTR (NM_001252650, exon 6 of 6)	3' UTR (NM_001252650, exon 6 of 6)	-3068	NM_006370	10490		NM_006370	ENSG00000100568	VTI1B	VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding
217660	chr8	30087901	30088100	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-4792	NM_001284239	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
200680	chr6	137229451	137229750	+	0	NA	Intergenic	Intergenic	-10215	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
28442	chr10	48658121	48658680	+	0	NA	Intergenic	Intergenic	-2135	NR_045675	58504		NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding
114119	chr19	11142851	11143880	+	0	NA	Intergenic	Intergenic	12417	NM_001317033								
236093	chrX	56788721	56789100	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-51326	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
154199	chr22	31401601	31402030	+	0	NA	intron (NM_004147, intron 2 of 8)	AluSg|SINE|Alu	2211	NM_004147	4733		NM_004147	ENSG00000185721	DRG1	NEDD3|TANALS	developmentally regulated GTP binding protein 1	protein-coding
36112	chr11	3088221	3088800	+	0	NA	intron (NM_145638, intron 20 of 20)	intron (NM_145638, intron 20 of 20)	-31087	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
117166	chr19	19340971	19342180	+	0	NA	intron (NM_015329, intron 7 of 18)	intron (NM_015329, intron 7 of 18)	20746	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
177427	chr4	112514121	112514750	+	0	NA	promoter-TSS (NR_161159)	promoter-TSS (NR_161159)	-944	NR_161159	105377372		NR_161159		NEUROG2-AS1	-	NEUROG2 and ZGRF1 antisense RNA 1	ncRNA
100186	chr17	58661001	58661480	+	0	NA	intron (NM_198393, intron 1 of 32)	intron (NM_198393, intron 1 of 32)	30805	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
160441	chr3	28345771	28345930	+	0	NA	intron (NM_001271650, intron 1 of 8)	intron (NM_001271650, intron 1 of 8)	-2871	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
220028	chr8	90991151	90991480	+	0	NA	Intergenic	Intergenic	-6077	NM_001190972	100127983		NM_001190972	ENSG00000253250	C8orf88	-	chromosome 8 open reading frame 88	protein-coding
156507	chr22	41305271	41305830	+	0	NA	intron (NM_017590, intron 1 of 22)	intron (NM_017590, intron 1 of 22)	-3181	NM_001317930	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
137004	chr2	190644021	190644430	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-4670	NM_001321313	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
185217	chr5	121949871	121950030	+	0	NA	Intergenic	Intergenic	-12025	NM_152546	153443		NM_152546	ENSG00000151304	SRFBP1	BUD22|P49|Rlb1|STRAP|p49/STRAP	serum response factor binding protein 1	protein-coding
231536	chr9	131448271	131449050	+	0	NA	intron (NM_013318, intron 9 of 31)	AluJo|SINE|Alu	-37005	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
1667	chr1	3899621	3901800	+	0	NA	promoter-TSS (NM_207356)	promoter-TSS (NM_207356)	306	NR_024455	100133612		NR_024455	ENSG00000236423	LINC01134	TLNC1	long intergenic non-protein coding RNA 1134	ncRNA
202565	chr6	158677521	158677780	+	0	NA	intron (NM_001318745, intron 2 of 14)	AluSx|SINE|Alu	14247	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
42409	chr11	69053451	69053950	+	0	NA	intron (NM_139075, intron 1 of 24)	intron (NM_139075, intron 1 of 24)	4768	NM_139075	219931		NM_139075	ENSG00000162341	TPCN2	SHEP10|TPC2	two pore segment channel 2	protein-coding
93170	chr17	17790921	17791500	+	0	NA	intron (NM_030665, intron 2 of 5)	intron (NM_030665, intron 2 of 5)	-11681	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
166673	chr3	120096971	120097130	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2603	NM_001146156	2932		NM_002093	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding
156886	chr22	42149871	42150230	+	0	NA	Intergenic	Intergenic	-5496	NR_111920	101929829		NR_111920		LOC101929829	-	cytochrome P450 family 2 subfamily D member 6 pseudogene	pseudo
128255	chr2	54567271	54567700	+	0	NA	intron (NM_178313, intron 1 of 30)	AluJb|SINE|Alu	9091	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
186707	chr5	138792321	138792650	+	0	NA	intron (NM_001290307, intron 3 of 18)	intron (NM_001290307, intron 3 of 18)	-38561	NR_134244	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
39542	chr11	61109671	61110000	+	0	NA	intron (NM_014207, intron 1 of 10)	intron (NM_014207, intron 1 of 10)	7346	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
231811	chr9	132412101	132412750	+	0	NA	intron (NM_001282957, intron 1 of 5)	intron (NM_001282957, intron 1 of 5)	2214	NM_207417	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
230633	chr9	128653871	128654030	+	0	NA	intron (NM_052844, intron 1 of 8)	AluY|SINE|Alu	2900	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
125482	chr2	12456221	12457080	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	257520	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
157118	chr22	42645171	42646650	+	0	NA	intron (NM_000398, intron 1 of 8)	intron (NM_000398, intron 1 of 8)	1079	NM_001171661	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
117198	chr19	19382801	19383000	+	0	NA	Intergenic	AluJr4|SINE|Alu	-2943	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
163684	chr3	52243651	52244380	+	0	NA	Intergenic	Intergenic	-1744	NM_144641	132160		NM_144641	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein-coding
68515	chr14	88564271	88564500	+	0	NA	intron (NM_001326302, intron 2 of 15)	MIRb|SINE|MIR	1038	NM_207661	79882		NM_024824	ENSG00000100722	ZC3H14	MRT56|MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
199579	chr6	118958671	118958850	+	0	NA	Intergenic	L3|LINE|CR1	-23601	NM_001378366	254394		NM_017696	ENSG00000111877	MCM9	C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3	minichromosome maintenance 9 homologous recombination repair factor	protein-coding
154924	chr22	37209071	37209230	+	0	NA	intron (NM_001051, intron 1 of 1)	intron (NM_001051, intron 1 of 1)	1539	NM_001278687	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
99687	chr17	50772201	50772630	+	0	NA	Intergenic	MamGypLTR2c|LTR|Gypsy	3765	NR_107026	102466918		NR_107026	ENSG00000278672	MIR8059	hsa-mir-8059	microRNA 8059	ncRNA
148722	chr21	6997621	6997950	+	0	NA	Intergenic	Intergenic	-51074	NM_001322036	102724951		NM_001322036	ENSG00000276077	LINC03105	-	long intergenic non-protein coding RNA 3105	ncRNA
106397	chr18	13416401	13416800	+	0	NA	intron (NM_001378099, intron 3 of 6)	intron (NM_001378099, intron 3 of 6)	10934	NR_040031	100288122		NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
238881	chrX	154546421	154548530	+	0	NA	promoter-TSS (NM_001099857)	promoter-TSS (NM_001099857)	94	NM_001042351	2539		NM_000402	ENSG00000160211	G6PD	G6PD1	glucose-6-phosphate dehydrogenase	protein-coding
236399	chrX	71144651	71145130	+	0	NA	promoter-TSS (NM_001166660)	promoter-TSS (NM_001166660)	49	NM_001321276	54413		NM_018977	ENSG00000196338	NLGN3	HNL3	neuroligin 3	protein-coding
39054	chr11	47919501	47919850	+	0	NA	Intergenic	AluJr|SINE|Alu	-60884	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
194359	chr6	32954721	32955250	+	0	NA	Intergenic	Intergenic	-1888	NM_006120	3108		NM_006120	ENSG00000204257	HLA-DMA	D6S222E|DMA|HLADM|RING6	major histocompatibility complex, class II, DM alpha	protein-coding
185030	chr5	115601701	115603280	+	0	NA	promoter-TSS (NM_021649)	promoter-TSS (NM_021649)	-11	NM_021649	353376		NM_021649	ENSG00000243414	TICAM2	MyD88-4|TICAM-2|TIRAP3|TIRP|TRAM	TIR domain containing adaptor molecule 2	protein-coding
173314	chr4	7435401	7435600	+	0	NA	promoter-TSS (NM_001085382)	promoter-TSS (NM_001085382)	-570	NM_001085382	768239		NM_001085382	ENSG00000178597	PSAPL1	-	prosaposin like 1	protein-coding
66766	chr14	64535351	64535650	+	0	NA	intron (NR_110550, intron 1 of 3)	THE1B|LTR|ERVL-MaLR	4868	NR_110550	102723809		NR_110550	ENSG00000259116	HSPA2-AS1	-	HSPA2 and ZBTB1 antisense RNA 1	ncRNA
230734	chr9	128827601	128827800	+	0	NA	intron (NM_016390, intron 3 of 11)	AluSx|SINE|Alu	2094	NM_016390	51490		NM_016390	ENSG00000198917	SPOUT1	C9orf114|CENP-32|CENP32|HSPC109	SPOUT domain containing methyltransferase 1	protein-coding
94459	chr17	29257271	29257430	+	0	NA	3' UTR (NM_020772, exon 4 of 4)	3' UTR (NM_020772, exon 4 of 4)	10491	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
105464	chr17	83053901	83054550	+	0	NA	Intergenic	Intergenic	-2415	NM_001009905	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
5580	chr1	25992051	25992380	+	0	NA	intron (NM_000437, intron 1 of 10)	FLAM_A|SINE|Alu	5848	NM_000437	5051		NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding
155260	chr22	37996171	37997100	+	0	NA	intron (NM_001301130, intron 5 of 5)	MIR3|SINE|MIR	7841	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
21784	chr1	206933121	206933780	+	0	NA	intron (NM_002644, intron 6 of 10)	intron (NM_002644, intron 6 of 10)	-11509	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
202472	chr6	158235051	158235350	+	0	NA	Intergenic	L1MB3|LINE|L1	66850	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
166774	chr3	122420051	122420350	+	0	NA	intron (NR_125405, intron 1 of 2)	intron (NR_125405, intron 1 of 2)	3994	NR_125405	102723582		NR_125405	ENSG00000272758	WDR5B-DT	-	WDR5B divergent transcript	ncRNA
228471	chr9	99867571	99867730	+	0	NA	TTS (NM_006981)	TTS (NM_006981)	38951	NR_038853	441461		NR_038853		STX17-DT	STX17-AS1	STX17 divergent transcript	ncRNA
217948	chr8	38174821	38175250	+	0	NA	intron (NR_045493, intron 1 of 3)	AluSx1|SINE|Alu	1458	NM_014462	27257		NM_014462	ENSG00000175324	LSM1	CASM|YJL124C	LSM1 homolog, mRNA degradation associated	protein-coding
57074	chr12	121019851	121020350	+	0	NA	TTS (NM_003733)	TTS (NM_003733)	-3613	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
17469	chr1	156711671	156711830	+	0	NA	Intergenic	Intergenic	-5934	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
193563	chr6	30640271	30640650	+	0	NA	intron (NM_001318762, intron 7 of 8).4	intron (NM_001318762, intron 7 of 8).4	-6673	NM_001109938	221545		NM_145029	ENSG00000204564	C6orf136	-	chromosome 6 open reading frame 136	protein-coding
164476	chr3	59982551	59982850	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	98209	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
161155	chr3	39088721	39088980	+	0	NA	intron (NM_001346226, intron 15 of 18)	intron (NM_001346226, intron 15 of 18)	18777	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
147433	chr20	58902371	58903400	+	0	NA	intron (NM_000516, intron 3 of 12)	AluSx|SINE|Alu	10722	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
15912	chr1	151707521	151707880	+	0	NA	intron (NM_007185, intron 6 of 12)	intron (NM_007185, intron 6 of 12)	9103	NM_001172649	11189		NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP Elav-like family member 3	protein-coding
232864	chr9	136804401	136804600	+	0	NA	non-coding (NR_024580, exon 5 of 5)	non-coding (NR_024580, exon 5 of 5)	-3448	NM_024718	55684		NM_017995	ENSG00000196642	RABL6	C9orf86|PARF|RBEL1|pp8875	RAB, member RAS oncogene family like 6	protein-coding
53963	chr12	73289171	73289330	+	0	NA	Intergenic	L1HS|LINE|L1	130060	NR_110130	101928137		NR_110130	ENSG00000258123	LINC02444	-	long intergenic non-protein coding RNA 2444	ncRNA
168032	chr3	136905821	136906290	+	0	NA	intron (NM_001291999, intron 1 of 3)	L1MA4A|LINE|L1	-24447	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
145261	chr20	39269051	39269150	+	0	NA	Intergenic	Intergenic	-44352	NR_027124	339568		NR_027124	ENSG00000230324	LINC01734	-	long intergenic non-protein coding RNA 1734	ncRNA
135872	chr2	170972571	170972730	+	0	NA	Intergenic	L4_B_Mam|LINE|RTE-X	43397	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
56484	chr12	116213851	116214350	+	0	NA	intron (NM_015335, intron 2 of 30)	MER66D|LTR|ERV1	63593	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
163783	chr3	52391251	52391630	+	0	NA	intron (NM_015512, intron 62 of 77)	intron (NM_015512, intron 62 of 77)	18568	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
190857	chr6	1773751	1774050	+	0	NA	intron (NM_001253846, intron 7 of 10)	intron (NM_001253846, intron 7 of 10)	163985	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
60502	chr13	41324501	41325230	+	0	NA	intron (NM_024561, intron 5 of 19)	intron (NM_024561, intron 5 of 19)	-12827	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
68134	chr14	75527501	75528180	+	0	NA	intron (NM_006399, intron 2 of 2)	intron (NM_006399, intron 2 of 2)	5371	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
69268	chr14	93058421	93058700	+	0	NA	intron (NM_014216, intron 3 of 10).2	CpG	-8892	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
23727	chr1	232335251	232335750	+	0	NA	Intergenic	Intergenic	294633	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
22143	chr1	212036971	212037430	+	0	NA	intron (NM_001286229, intron 1 of 12)	MIR|SINE|MIR	1452	NM_016448	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
137468	chr2	197068601	197069350	+	0	NA	intron (NM_001195144, intron 16 of 27)	L1PA5|LINE|L1	-129016	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
64690	chr14	32560351	32560530	+	0	NA	intron (NM_004274, intron 4 of 13)	intron (NM_004274, intron 4 of 13)	231142	NM_004274	9472		NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding
42670	chr11	72586671	72586830	+	0	NA	intron (NM_001243784, intron 13 of 30)	intron (NM_001243784, intron 13 of 30)	16094	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
175448	chr4	71261821	71262080	+	0	NA	intron (NM_001134742, intron 3 of 24)	intron (NM_001134742, intron 3 of 24)	74691	NM_001098484	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
143457	chr20	30586371	30586530	+	0	NA	Intergenic	CpG	-182988	NR_045115	140678		NR_045115		MLLT10P1	MLLT10L|bA348I14.3	MLLT10 pseudogene 1	pseudo
27709	chr10	33248471	33249050	+	0	NA	intron (NM_001244973, intron 6 of 16)	intron (NM_001244973, intron 6 of 16)	85907	NM_001330068	8829		NM_003873	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding
47686	chr12	6367601	6368450	+	0	NA	intron (NM_001159575, intron 2 of 12)	intron (NM_001159575, intron 2 of 12)	-7135	NM_001270987	4055		NM_002342	ENSG00000111321	LTBR	D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	lymphotoxin beta receptor	protein-coding
82712	chr16	20849851	20850180	+	0	NA	TTS (NM_001144924)	TTS (NM_001144924)	43488	NM_001144924	81691		NM_030941	ENSG00000005189	REXO5	NEF-sp	RNA exonuclease 5	protein-coding
30918	chr10	87093921	87094300	+	0	NA	promoter-TSS (NM_001318901)	promoter-TSS (NM_001318901)	-23	NM_001318901	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
184097	chr5	93612121	93612750	+	0	NA	Intergenic	Intergenic	8353	NR_031754	100313887		NR_031754	ENSG00000284336	MIR2277	mir-2277	microRNA 2277	ncRNA
19533	chr1	177948451	177948550	+	0	NA	intron (NR_151492, intron 21 of 22)	MIRc|SINE|MIR	21422	NM_033127	89866		NM_033127	ENSG00000120341	SEC16B	LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S	SEC16 homolog B, endoplasmic reticulum export factor	protein-coding
170528	chr3	186589471	186590230	+	0	NA	Intergenic	AluSx|SINE|Alu	19130	NR_165640	51726		NM_016306	ENSG00000090520	DNAJB11	ABBP-2|ABBP2|DJ9|Dj-9|EDJ|ERdj3|ERj3|ERj3p|PKD6|PRO1080|UNQ537	DnaJ heat shock protein family (Hsp40) member B11	protein-coding
115242	chr19	14517401	14519080	+	0	NA	promoter-TSS (NM_001300914)	promoter-TSS (NM_001300914)	157	NM_006145	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
63815	chr14	21446921	21447380	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	8973	NM_001170629	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
64665	chr14	31868121	31868380	+	0	NA	Intergenic	L1PB1|LINE|L1	-76603	NR_146544	105370439		NR_146544	ENSG00000258474	LINC02313	-	long intergenic non-protein coding RNA 2313	ncRNA
190351	chr5	179696351	179697130	+	0	NA	Intergenic	Intergenic	-1687	NM_001363994	821		NM_001746	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
158439	chr22	50603471	50604380	+	0	NA	exon (NM_012324, exon 5 of 12)	exon (NM_012324, exon 5 of 12)	3132	NM_012324	23542		NM_012324	ENSG00000008735	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
90761	chr17	2054701	2055500	+	0	NA	promoter-TSS (NM_006497)	promoter-TSS (NM_006497)	-3	NM_006497	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
209668	chr7	79876801	79877000	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-257931	NM_002069	2770		NM_002069	ENSG00000127955	GNAI1	Gi|HG1B|NEDHISB	G protein subunit alpha i1	protein-coding
40237	chr11	63582371	63583280	+	0	NA	intron (NM_007069, intron 3 of 3)	intron (NM_007069, intron 3 of 3)	-19446	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
58221	chr12	127866271	127866430	+	0	NA	Intergenic	L1PA3|LINE|L1	-15267	NR_033987	400087		NR_033987	ENSG00000256597	LINC02393	-	long intergenic non-protein coding RNA 2393	ncRNA
84030	chr16	29502601	29502900	+	0	NA	intron (NM_001355401, intron 2 of 7)	intron (NM_001355401, intron 2 of 7)	3124	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
196129	chr6	42403471	42403780	+	0	NA	intron (NM_033502, intron 2 of 17)	MLT1C|LTR|ERVL-MaLR	48426	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
26501	chr10	18583571	18583930	+	0	NA	intron (NM_001351118, intron 6 of 8)	L1M4b|LINE|L1	67837	NM_182543	221078		NM_182543	ENSG00000241058	NSUN6	4933414E04Rik|ARL5B-AS1|MRT82|NOPD1	NOP2/Sun RNA methyltransferase 6	protein-coding
101319	chr17	66649871	66651030	+	0	NA	intron (NM_002737, intron 5 of 16)	intron (NM_002737, intron 5 of 16)	-136622	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
91543	chr17	5016921	5017800	+	0	NA	intron (NM_006612, intron 18 of 22)	AluY|SINE|Alu	2733	NR_120665	102724009		NR_120665	ENSG00000227495	KIF1C-AS1	-	KIF1C antisense RNA 1	ncRNA
165345	chr3	88152701	88152900	+	0	NA	intron (NM_173824, intron 1 of 2)	MIRc|SINE|MIR	2841	NM_173824	285237		NM_173824	ENSG00000179021	C3orf38	-	chromosome 3 open reading frame 38	protein-coding
231317	chr9	130099521	130099990	+	0	NA	intron (NM_001136557, intron 10 of 19)	intron (NM_001136557, intron 10 of 19)	44464	NR_135124	401554		NR_135124	ENSG00000196979	GPRACR	LncGPR107	GPR107 adjacent cis regulating lncRNA	ncRNA
138030	chr2	201285751	201285850	+	0	NA	intron (NM_001228, intron 9 of 9)	intron (NM_001228, intron 9 of 9)	25264	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
172906	chr4	3488771	3489080	+	0	NA	intron (NM_001256896, intron 2 of 3)	intron (NM_001256896, intron 2 of 3)	4381	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
165870	chr3	106067721	106068030	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-198474	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
6239	chr1	27532871	27533230	+	0	NA	Intergenic	Intergenic	-42883	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
4437	chr1	21295871	21296330	+	0	NA	intron (NR_038404, intron 2 of 2)	intron (NR_038404, intron 2 of 2)	2810	NR_038404	100506801		NR_038404	ENSG00000231105	ECE1-AS1	-	ECE1 antisense RNA 1	ncRNA
18924	chr1	168443671	168444300	+	0	NA	Intergenic	Intergenic	-21329	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
203051	chr6	166106021	166106280	+	0	NA	Intergenic	L2c|LINE|L2	8430	NR_147704	729681		NR_147704		LOC729681	-	uncharacterized LOC729681	ncRNA
113550	chr19	10232751	10233350	+	0	NA	Intergenic	AluSc5|SINE|Alu	-1719	NM_004230	9294		NM_004230	ENSG00000267534	S1PR2	AGR16|DFNB68|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding
202	chr1	698701	698900	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-12146	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
88979	chr16	87874651	87875380	+	0	NA	Intergenic	Intergenic	-5508	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
55130	chr12	98602001	98602830	+	0	NA	TTS (NM_005888)	TTS (NM_005888)	2780	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
49148	chr12	14945751	14946050	+	0	NA	intron (NR_135637, intron 2 of 3)	intron (NR_135637, intron 2 of 3)	2996	NR_135637	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
207765	chr7	50149451	50150280	+	0	NA	intron (NM_001161834, intron 7 of 8)	intron (NM_001161834, intron 7 of 8)	53982	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
34018	chr10	124706651	124706750	+	0	NA	exon (NM_014661, exon 2 of 5)	exon (NM_014661, exon 2 of 5)	2672	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
210785	chr7	100785801	100786200	+	0	NA	non-coding (NR_111919, exon 37 of 47)	non-coding (NR_111919, exon 37 of 47)	-40869	NM_001363494	56996		NM_020246	ENSG00000146828	SLC12A9	CCC6|CIP1|WO3.3|hCCC6	solute carrier family 12 member 9	protein-coding
8999	chr1	44677121	44677780	+	0	NA	intron (NM_001145636, intron 1 of 11)	L2|LINE|L2	2736	NM_001145636	339541		NM_001004307	ENSG00000198520	ARMH1	C1orf228|NCRNA00082|p40	armadillo like helical domain containing 1	protein-coding
15657	chr1	150873501	150873900	+	0	NA	intron (NM_001350224, intron 1 of 22)	AluJr|SINE|Alu	2899	NM_001197325	405		NM_001668	ENSG00000143437	ARNT	ARNT1|HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2	aryl hydrocarbon receptor nuclear translocator	protein-coding
172656	chr4	2616951	2617250	+	0	NA	intron (NM_001366318, intron 2 of 20)	AluSx|SINE|Alu	-8332	NM_003704	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
106891	chr18	24487651	24488200	+	0	NA	Intergenic	Intergenic	27288	NM_021624	59340		NM_021624	ENSG00000134489	HRH4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
108389	chr18	69874271	69874430	+	0	NA	intron (NM_006566, intron 4 of 6)	intron (NM_006566, intron 4 of 6)	73523	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
238387	chrX	150362761	150363800	+	0	NA	promoter-TSS (NM_001177465)	promoter-TSS (NM_001177465)	-37	NM_001177465	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
223587	chr8	144284821	144285080	+	0	NA	intron (NM_015201, intron 2 of 15)	intron (NM_015201, intron 2 of 15)	6488	NM_015201	23246		NM_015201	ENSG00000261236	BOP1	-	BOP1 ribosomal biogenesis factor	protein-coding
89417	chr16	88887521	88887980	+	0	NA	TTS (NR_135194)	TTS (NR_135194)	4235	NR_135194	101927793		NR_135194	ENSG00000259881	LOC101927793	-	uncharacterized LOC101927793	ncRNA
49841	chr12	32589301	32589700	+	0	NA	intron (NM_001385118, intron 4 of 16)	intron (NM_001385118, intron 4 of 16)	55178	NM_001384130	121512		NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
197302	chr6	72469951	72470130	+	0	NA	Intergenic	L1PA3|LINE|L1	103294	NM_001168411	22999		NM_014989	ENSG00000079841	RIMS1	CORD7|RAB3IP2|RIM|RIM1	regulating synaptic membrane exocytosis 1	protein-coding
80930	chr16	3814001	3814400	+	0	NA	intron (NM_004380, intron 2 of 30)	(GT)n|Simple_repeat|Simple_repeat	65920	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
188872	chr5	159362251	159362380	+	0	NA	non-coding (NR_037889, exon 5 of 5)	non-coding (NR_037889, exon 5 of 5)	30797	NR_037889	285626		NR_037889	ENSG00000249738	LOC285626	-	uncharacterized LOC285626	ncRNA
120936	chr19	45671951	45672280	+	0	NA	intron (NM_000164, intron 4 of 13)	AluJr|SINE|Alu	-2813	NR_030372	693227		NR_030372	ENSG00000207773	MIR642A	MIR642|MIRN642|hsa-mir-642|hsa-mir-642a|mir-642a	microRNA 642a	ncRNA
174812	chr4	48130621	48130880	+	0	NA	intron (NM_003328, intron 1 of 14)	intron (NM_003328, intron 1 of 14)	3500	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
209940	chr7	92596101	92596500	+	0	NA	Intergenic	L1MD|LINE|L1	-5910	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
111509	chr19	3989201	3989400	+	0	NA	Intergenic	AluSx4|SINE|Alu	-3837	NM_001961	1938		NM_001961	ENSG00000167658	EEF2	EEF-2|EF-2|EF2|SCA26	eukaryotic translation elongation factor 2	protein-coding
18677	chr1	167249601	167249800	+	0	NA	intron (NM_001365848, intron 2 of 17)	L2c|LINE|L2	28814	NM_002697	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
150191	chr21	39313201	39315000	+	0	NA	promoter-TSS (NM_018963)	promoter-TSS (NM_018963)	193	NR_111942	103091865		NR_111942	ENSG00000255568	BRWD1-AS2	BRWD1-IT2|C21orf87|NCRNA00257	BRWD1 antisense RNA 2	ncRNA
110111	chr19	1560151	1560950	+	0	NA	intron (NM_203304, intron 1 of 1)	intron (NM_203304, intron 1 of 1)	7508	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
62773	chr13	108322121	108322430	+	0	NA	Intergenic	Intergenic	52557	NM_006573	10673		NM_006573	ENSG00000102524	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4	TNF superfamily member 13b	protein-coding
44793	chr11	113314221	113315900	+	0	NA	non-coding (NR_165392, exon 2 of 24)	non-coding (NR_165392, exon 2 of 24)	477	NM_001318533	54970		NM_017868	ENSG00000149292	TTC12	CILD45|TPARM	tetratricopeptide repeat domain 12	protein-coding
238014	chrX	135005421	135005680	+	0	NA	Intergenic	Intergenic	14559	NM_001163438	644538		NM_001163438	ENSG00000184785	SMIM10	CXorf69	small integral membrane protein 10	protein-coding
50159	chr12	45914251	45914350	+	0	NA	Intergenic	Intergenic	76274	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
234954	chrX	38817101	38818150	+	0	NA	Intergenic	L2c|LINE|L2	-13742	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
182118	chr5	56094421	56094880	+	0	NA	Intergenic	Intergenic	99483	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
101013	chr17	64713921	64714650	+	0	NA	Intergenic	Intergenic	-51978	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
212789	chr7	130142601	130142800	+	0	NA	TTS (NR_149033)	TTS (NR_149033)	969	NR_149034	100128325		NR_149033	ENSG00000229196	LINC03008	-	long intergenic non-protein coding RNA 3008	ncRNA
82224	chr16	15027101	15027600	+	0	NA	intron (NM_001324019, intron 14 of 22)	LTR1A2|LTR|ERV1	-16953	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
46382	chr11	126281401	126281630	+	0	NA	Intergenic	Intergenic	-1572	NM_001318777	114609		NM_052887	ENSG00000150455	TIRAP	BACTS1|Mal|MyD88-2|wyatt	TIR domain containing adaptor protein	protein-coding
225145	chr9	33747601	33747800	+	0	NA	Intergenic	Intergenic	-2766	NM_001197097	5646		NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	serine protease 3	protein-coding
223806	chr8	144796771	144796930	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-2063	NM_001317936	340385		NM_213605	ENSG00000197363	ZNF517	-	zinc finger protein 517	protein-coding
164449	chr3	59457251	59457350	+	0	NA	Intergenic	Intergenic	201197	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
12279	chr1	100532951	100533630	+	0	NA	Intergenic	MIR|SINE|MIR	-4849	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
160712	chr3	32414251	32415350	+	0	NA	intron (NM_138410, intron 1 of 4)	MIRb|SINE|MIR	22947	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
104252	chr17	80745971	80746530	+	0	NA	intron (NM_020761, intron 5 of 33)	CpG	59382	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
46518	chr11	128452571	128453050	+	0	NA	Intergenic	Intergenic	69500	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
204561	chr7	5186951	5187400	+	0	NA	Intergenic	L1M5|LINE|L1	-3058	NM_015610	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
114060	chr19	11074521	11074780	+	0	NA	Intergenic	L1MB3|LINE|L1	-14813	NM_001195799	3949		NM_000527	ENSG00000130164	LDLR	FH|FHC|FHCL1|LDLCQ2	low density lipoprotein receptor	protein-coding
9171	chr1	45589621	45590930	+	0	NA	intron (NM_001195193, intron 1 of 12)	AluY|SINE|Alu	6234	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
137837	chr2	200524321	200524780	+	0	NA	Intergenic	AluY|SINE|Alu	-1592	NM_001160033	151246		NM_152524	ENSG00000163535	SGO2	SGOL2|TRIPIN	shugoshin 2	protein-coding
215927	chr8	8288571	8288730	+	0	NA	Intergenic	Intergenic	60080	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
207839	chr7	50341571	50342000	+	0	NA	intron (NM_001291840, intron 2 of 2)	MER33|DNA|hAT-Charlie	22737	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
234604	chrX	19799021	19800230	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	148	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
108083	chr18	59988121	59988400	+	0	NA	Intergenic	Intergenic	88264	NM_001382623	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
140190	chr2	231673601	231673930	+	0	NA	Intergenic	Intergenic	-34760	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
85959	chr16	57277521	57278330	+	0	NA	intron (NM_015993, intron 1 of 3)	L1ME4b|LINE|L1	6747	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
103732	chr17	78856001	78856400	+	0	NA	intron (NM_003255, intron 4 of 4)	intron (NM_003255, intron 4 of 4)	-14761	NM_001385176	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
231084	chr9	129752901	129753300	+	0	NA	promoter-TSS (NM_004878)	promoter-TSS (NM_004878)	-58	NM_004878	9536		NM_004878	ENSG00000148344	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
81951	chr16	11844421	11844930	+	0	NA	intron (NM_015659, intron 5 of 8)	intron (NM_015659, intron 5 of 8)	6867	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
221967	chr8	129981551	129981650	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	26853	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
105008	chr17	82030271	82031400	+	0	NA	promoter-TSS (NM_005052)	promoter-TSS (NM_005052)	-843	NM_005052	5881		NM_005052	ENSG00000169750	RAC3	-	Rac family small GTPase 3	protein-coding
148895	chr21	8463921	8464730	+	0	NA	Intergenic	(CTCT)n|Simple_repeat|Simple_repeat	23179	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
137496	chr2	197150871	197151030	+	0	NA	intron (NM_153697, intron 2 of 9)	L1MEd|LINE|L1	-47041	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
190678	chr5	181326451	181326830	+	0	NA	non-coding (NR_028322, exon 3 of 3).2	non-coding (NR_028322, exon 3 of 3).2	3134	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
98628	chr17	47804651	47804750	+	0	NA	Intergenic	Intergenic	17094	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
199546	chr6	118815171	118816050	+	0	NA	exon (NM_017696, exon 14 of 14)	exon (NM_017696, exon 14 of 14)	32902	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
189085	chr5	170286471	170286850	+	0	NA	intron (NM_005565, intron 3 of 20)	intron (NM_005565, intron 3 of 20)	11117	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
23915	chr1	235014871	235015230	+	0	NA	Intergenic	AluJo|SINE|Alu	-51051	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
5473	chr1	25656571	25656730	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	-39505	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
201289	chr6	144310501	144311130	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	19078	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
131287	chr2	96102951	96103150	+	0	NA	Intergenic	Intergenic	13521	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
42521	chr11	70470171	70470330	+	0	NA	non-coding (NR_110766, exon 9 of 9)	non-coding (NR_110766, exon 9 of 9)	71721	NM_005231	2017		NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding
212617	chr7	129224321	129226250	+	0	NA	exon (NM_015328, exon 1 of 17)	exon (NM_015328, exon 1 of 17)	255	NM_001130720	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
234703	chrX	20452421	20453130	+	0	NA	Intergenic	Intergenic	-185866	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
125995	chr2	25305121	25306050	+	0	NA	intron (NR_135490, intron 2 of 23)	MIRc|SINE|MIR	23136	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
196994	chr6	53295401	53295880	+	0	NA	intron (NM_001242831, intron 2 of 2)	intron (NM_001242831, intron 2 of 2)	18647	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
109190	chr19	382401	383000	+	0	NA	Intergenic	Intergenic	-6674	NM_016585	51298		NM_016585	ENSG00000105549	SPMAP2	CT56|THEG|THEG1	sperm microtubule associated protein 2	protein-coding
208219	chr7	65239621	65240130	+	0	NA	Intergenic	CpG	98845	NR_146905	285905		NM_182596	ENSG00000290545	INTS4P1	INTS4L1	integrator complex subunit 4 pseudogene 1	pseudo
138217	chr2	202736771	202737130	+	0	NA	intron (NM_173511, intron 4 of 7)	intron (NM_173511, intron 4 of 7)	92284	NM_001288624	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
209696	chr7	83024451	83024650	+	0	NA	intron (NM_014510, intron 3 of 19)	L1PA3|LINE|L1	138334	NM_014510	27445		NM_014510	ENSG00000186472	PCLO	ACZ|PCH3	piccolo presynaptic cytomatrix protein	protein-coding
180893	chr5	34148101	34148330	+	0	NA	intron (NR_146599, intron 7 of 11)	L1HS|LINE|L1	-23687	NR_037951	100534612		NR_037951	ENSG00000273294	C1QTNF3-AMACR	-	C1QTNF3-AMACR readthrough (NMD candidate)	ncRNA
126040	chr2	25373301	25373500	+	0	NA	Intergenic	Intergenic	-30810	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
18368	chr1	161311751	161312250	+	0	NA	Intergenic	AluJb|SINE|Alu	-2032	NM_001315491	4359		NM_000530	ENSG00000158887	MPZ	CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0	myelin protein zero	protein-coding
232713	chr9	136579221	136579980	+	0	NA	Intergenic	Intergenic	31758	NR_121577	101928483		NR_121577		NALT1	LINC01573|MIR4674HG|NALT|TCONS_l2_00029132	NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1	ncRNA
211087	chr7	102487151	102487700	+	0	NA	intron (NM_001367767, intron 18 of 20)	intron (NM_001367767, intron 18 of 20)	-8503	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
45310	chr11	118154951	118155050	+	0	NA	Intergenic	Intergenic	-2177	NM_174934	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
214607	chr7	150687871	150688630	+	0	NA	intron (NM_015660, intron 2 of 2)	AluSz|SINE|Alu	2544	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
47879	chr12	6693021	6693480	+	0	NA	TTS (NM_001244015)	TTS (NM_001244015)	-3678	NM_001039920	171017		NM_133476	ENSG00000126746	ZNF384	CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1	zinc finger protein 384	protein-coding
235924	chrX	53188821	53189950	+	0	NA	intron (NR_148672, intron 25 of 26)	MIRb|SINE|MIR	6103	NR_106955	102465539		NR_106955	ENSG00000276575	MIR6895	hsa-mir-6895	microRNA 6895	ncRNA
87007	chr16	68243571	68243730	+	0	NA	Intergenic	AluJb|SINE|Alu	-1723	NM_001363551	23659		NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	phospholipase A2 group XV	protein-coding
117834	chr19	31285901	31286150	+	0	NA	intron (NM_020856, intron 1 of 1)	intron (NM_020856, intron 1 of 1)	63411	NR_138034	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
14338	chr1	143970051	143970150	+	0	NA	intron (NR_144349, intron 1 of 3)	intron (NR_144349, intron 1 of 3)	1906	NM_001346070	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
124980	chr2	9139651	9140050	+	0	NA	Intergenic	Intergenic	-66915	NM_001135191	8853		NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
13074	chr1	111506571	111506730	+	0	NA	intron (NM_001081976, intron 1 of 5)	intron (NM_001081976, intron 1 of 5)	-3017	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
173035	chr4	4860601	4861200	+	0	NA	intron (NM_002448, intron 1 of 1)	intron (NM_002448, intron 1 of 1)	1235	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
53469	chr12	65983601	65983900	+	0	NA	Intergenic	Intergenic	39976	NR_106722	102464827		NR_106722	ENSG00000276878	MIR6074	hsa-mir-6074	microRNA 6074	ncRNA
83029	chr16	22307051	22307350	+	0	NA	intron (NM_018119, intron 3 of 20).2	MIRb|SINE|MIR	9791	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
41457	chr11	66112771	66112930	+	0	NA	intron (NM_018026, intron 1 of 23)	L1ME2z|LINE|L1	42578	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
189804	chr5	176872501	176873600	+	0	NA	intron (NM_133369, intron 6 of 14)	intron (NM_133369, intron 6 of 14)	26296	NM_002115	3101		NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3	protein-coding
111330	chr19	3632971	3633500	+	0	NA	intron (NM_001195733, intron 16 of 16)	intron (NM_001195733, intron 16 of 16)	-6420	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
67589	chr14	71932151	71932550	+	0	NA	promoter-TSS (NM_001204424)	promoter-TSS (NM_001204424)	-79	NM_001370287	9628		NM_004296	ENSG00000182732	RGS6	GAP|HA117|S914	regulator of G protein signaling 6	protein-coding
231661	chr9	131665671	131665830	+	0	NA	intron (NM_001377935, intron 1 of 26)	LTR79|LTR|ERVL	-14347	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
102784	chr17	76355771	76355930	+	0	NA	Intergenic	AluY|SINE|Alu	-1652	NM_001366236	5635		NM_002766	ENSG00000161542	PRPSAP1	PAP39	phosphoribosyl pyrophosphate synthetase associated protein 1	protein-coding
214957	chr7	151840021	151840280	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-25279	NM_001040633	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
218017	chr8	38470001	38470400	+	0	NA	Intergenic	AluSc|SINE|Alu	-1366	NM_001354370	2260		NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
17963	chr1	160436901	160437100	+	0	NA	Intergenic	Intergenic	36436	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
29908	chr10	73162601	73163150	+	0	NA	intron (NR_024203, intron 1 of 11)	LTR57|LTR|ERVL	5133	NM_007265	11319		NM_007265	ENSG00000122882	ECD	GCR2|HSGT1|SGT1	ecdysoneless cell cycle regulator	protein-coding
160559	chr3	30686351	30686450	+	0	NA	intron (NM_001024847, intron 6 of 7)	intron (NM_001024847, intron 6 of 7)	79799	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
94953	chr17	32106421	32106680	+	0	NA	Intergenic	Intergenic	-35904	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
66823	chr14	64759301	64759600	+	0	NA	intron (NM_001355436, intron 32 of 35)	intron (NM_001355436, intron 32 of 35)	26236	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
123303	chr19	53567151	53567680	+	0	NA	intron (NM_001317117, intron 3 of 5)	intron (NM_001317117, intron 3 of 5)	12108	NM_001079907	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
138503	chr2	207163351	207163800	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	2373	NM_003709	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
71663	chr14	106879251	106879730	+	0	NA	Intergenic	Intergenic	-28491	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
5876	chr1	26778001	26778430	+	0	NA	intron (NM_139135, intron 19 of 19)	AluSx1|SINE|Alu	-8839	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
146839	chr20	51417611	51418500	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	34922	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
225673	chr9	36470891	36471650	+	0	NA	Intergenic	Intergenic	-70072	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
66992	chr14	67239401	67239600	+	0	NA	Intergenic	Intergenic	-1935	NM_001256550	64398		NM_022474	ENSG00000072415	PALS1	MPP5	protein associated with LIN7 1, MAGUK p55 family member	protein-coding
201504	chr6	149046251	149046350	+	0	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-13639	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
121050	chr19	45824651	45825630	+	0	NA	intron (NM_004819, intron 18 of 26)	intron (NM_004819, intron 18 of 26)	-9832	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
135588	chr2	166181571	166181750	+	0	NA	intron (NR_110260, intron 3 of 11)	L1P4d|LINE|L1	-32499	NM_001202435	6323		NM_006920	ENSG00000144285	SCN1A	DEE6|DEE6A|DEE6B|DRVT|EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI	sodium voltage-gated channel alpha subunit 1	protein-coding
2257	chr1	8911421	8912080	+	0	NA	Intergenic	Intergenic	32915	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
105222	chr17	82346701	82347100	+	0	NA	Intergenic	Intergenic	-12347	NM_207459	400629		NM_207459	ENSG00000182459	TEX19	-	testis expressed 19	protein-coding
9022	chr1	44745271	44745630	+	0	NA	promoter-TSS (NM_001297656)	promoter-TSS (NM_001297656)	-944	NM_001297657	11004		NM_006845	ENSG00000142945	KIF2C	CT139|KNSL6|MCAK	kinesin family member 2C	protein-coding
158294	chr22	50376071	50376680	+	0	NA	intron (NM_001351641, intron 2 of 23)	L1MEd|LINE|L1	-31067	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
118214	chr19	35154401	35156130	+	0	NA	TTS (NM_022006)	TTS (NM_022006)	530	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
108490	chr18	72541871	72542030	+	0	NA	exon (NM_182511, exon 3 of 5)	exon (NM_182511, exon 3 of 5)	2392	NM_182511	147381		NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
36434	chr11	4621151	4621250	+	0	NA	Intergenic	L1PA2|LINE|L1	-12969	NM_018073	55128		NM_018073	ENSG00000167333	TRIM68	GC109|RNF137|SS-56|SS56	tripartite motif containing 68	protein-coding
231805	chr9	132406351	132407580	+	0	NA	promoter-TSS (NM_001205296)	promoter-TSS (NM_001205296)	-114	NM_001205296	7270		NM_007344	ENSG00000125482	TTF1	TTF-1|TTF-I	transcription termination factor 1	protein-coding
188976	chr5	163505201	163507580	+	0	NA	intron (NM_013283, intron 1 of 6)	intron (NM_013283, intron 1 of 6)	771	NM_013283	27430		NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2 non-catalytic beta subunit	protein-coding
120832	chr19	45502871	45503030	+	0	NA	TTS (NM_001080401)	TTS (NM_001080401)	4477	NM_001080401	147699		NM_178494	ENSG00000213889	PPM1N	-	protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)	protein-coding
62113	chr13	95380471	95380970	+	0	NA	Intergenic	MER66C|LTR|ERV1	-52879	NM_001160100	9071		NM_006984	ENSG00000134873	CLDN10	CPETRL3|HELIX|OSP-L|OSPL	claudin 10	protein-coding
232614	chr9	136439501	136440330	+	0	NA	promoter-TSS (NM_019892)	promoter-TSS (NM_019892)	-70	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
169877	chr3	177359301	177361330	+	0	NA	Intergenic	Intergenic	65873	NR_047465	100820709		NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
111284	chr19	3561521	3561780	+	0	NA	Intergenic	Intergenic	-4064	NM_174983	126321		NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501|SLC59B1	major facilitator superfamily domain containing 12	protein-coding
36252	chr11	3769901	3770400	+	0	NA	intron (NM_001365128, intron 7 of 32)	AluSx1|SINE|Alu	27396	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
225774	chr9	37424251	37424950	+	0	NA	intron (NM_012203, intron 1 of 8)	intron (NM_012203, intron 1 of 8)	1904	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
172802	chr4	2962701	2964830	+	0	NA	promoter-TSS (NM_003703)	promoter-TSS (NM_003703)	194	NM_005307	2868		NM_005307	ENSG00000125388	GRK4	GPRK2L|GPRK4|GRK4a|IT11	G protein-coupled receptor kinase 4	protein-coding
41935	chr11	67300671	67301130	+	0	NA	intron (NM_207354, intron 10 of 14)	intron (NM_207354, intron 10 of 14)	-2630	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
96351	chr17	40071221	40071630	+	0	NA	intron (NM_199334, intron 1 of 8)	intron (NM_199334, intron 1 of 8)	8460	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
42903	chr11	73379751	73379850	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	3132	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
66781	chr14	64672671	64672830	+	0	NA	Intergenic	Intergenic	-31674	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
90053	chr16	89933851	89934150	+	0	NA	intron (NM_001197181, intron 3 of 3)	CpG	10658	NM_006086	10381		NM_006086	ENSG00000258947	TUBB3	CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4	tubulin beta 3 class III	protein-coding
122762	chr19	50132471	50132930	+	0	NA	Intergenic	AluSx1|SINE|Alu	1164	NR_024230	100170217		NR_024230		SNAR-B2	-	small NF90 (ILF3) associated RNA B2	snRNA
23845	chr1	234691621	234691900	+	0	NA	Intergenic	L1ME5|LINE|L1	-32282	NR_038856	100506810		NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
108761	chr18	77125871	77126300	+	0	NA	intron (NM_001025100, intron 1 of 3)	L1MD2|LINE|L1	6698	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
234260	chrX	13142971	13143130	+	0	NA	Intergenic	Intergenic	-98430	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
184108	chr5	93994821	93995480	+	0	NA	intron (NR_028080, intron 3 of 8)	Tigger2b_Pri|DNA|TcMar-Tigger	116513	NM_032042	83989		NM_032042	ENSG00000113391	ARB2A	C5orf21|FAM172A|Toupee	ARB2 cotranscriptional regulator A	protein-coding
102683	chr17	76122921	76123180	+	0	NA	Intergenic	Intergenic	-17506	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
9117	chr1	45337871	45338480	+	0	NA	intron (NR_146882, intron 1 of 16)	L2a|LINE|L2	1782	NM_001293195	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
200706	chr6	137424351	137424650	+	0	NA	Intergenic	Intergenic	69894	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
65424	chr14	50871201	50871430	+	0	NA	promoter-TSS (NM_181533)	promoter-TSS (NM_181533)	-738	NM_001206673	145447		NM_181533	ENSG00000131969	ABHD12B	BEM46L3|C14orf29|c14_5314	abhydrolase domain containing 12B	protein-coding
113778	chr19	10543221	10545380	+	0	NA	exon (NM_032885, exon 1 of 10)	exon (NM_032885, exon 1 of 10)	396	NM_001281504	84971		NM_032885	ENSG00000130734	ATG4D	APG4-D|APG4D|AUTL4|HsAPG4D	autophagy related 4D cysteine peptidase	protein-coding
212361	chr7	127620801	127621030	+	0	NA	Intergenic	Intergenic	-2773	NM_001366110	5078		NM_006193	ENSG00000106331	PAX4	KPD|MODY9	paired box 4	protein-coding
132630	chr2	108626501	108627030	+	0	NA	intron (NM_001371500, intron 1 of 2)	intron (NM_001371500, intron 1 of 2)	5514	NM_001371500	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
30141	chr10	74084921	74085380	+	0	NA	intron (NM_014000, intron 8 of 21)	AluJr4|SINE|Alu	65678	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
201165	chr6	142940551	142941480	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	4161	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
24321	chr1	237506951	237507330	+	0	NA	intron (NM_001035, intron 23 of 104)	intron (NM_001035, intron 23 of 104)	36021	NR_039626	100616141		NR_039626	ENSG00000266262	MIR4428	-	microRNA 4428	ncRNA
232136	chr9	134024501	134026430	+	0	NA	promoter-TSS (NM_001355256)	promoter-TSS (NM_001355256)	-11	NR_149319	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
159139	chr3	12652951	12653300	+	0	NA	intron (NM_001354691, intron 1 of 16)	AluSz|SINE|Alu	10383	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
96896	chr17	42120551	42121630	+	0	NA	exon (NM_021078, exon 1 of 18)	exon (NM_021078, exon 1 of 18)	277	NM_021078	2648		NM_021078	ENSG00000108773	KAT2A	GCN5|GCN5L2|PCAF-b|hGCN5	lysine acetyltransferase 2A	protein-coding
218230	chr8	42045801	42046700	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-5500	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
63945	chr14	22086071	22086230	+	0	NA	Intergenic	Intergenic	346603	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
223652	chr8	144356251	144356350	+	0	NA	promoter-TSS (NM_001280561)	promoter-TSS (NM_001280561)	-691	NM_001280561	340393		NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
219920	chr8	86344151	86345600	+	0	NA	intron (NM_007013, intron 1 of 24)	intron (NM_007013, intron 1 of 24)	2328	NM_007013	11059		NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
30848	chr10	86523371	86523750	+	0	NA	Intergenic	Intergenic	-1768	NM_015045	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
174916	chr4	49108301	49108880	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	121948	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
83197	chr16	23508621	23509130	+	0	NA	intron (NM_015044, intron 1 of 16)	L2c|LINE|L2	1619	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
178056	chr4	139898371	139898530	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-229565	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
135949	chr2	171999401	172000680	+	0	NA	promoter-TSS (NM_199227)	promoter-TSS (NM_199227)	87	NR_136276	254042		NM_199227	ENSG00000172878	METAP1D	MAP 1D|MAP1D|MetAP 1D|Metap1l	methionyl aminopeptidase type 1D, mitochondrial	protein-coding
192421	chr6	24871451	24871750	+	0	NA	intron (NM_001286447, intron 4 of 13)	AluSq|SINE|Alu	5670	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
177969	chr4	139033021	139033480	+	0	NA	intron (NM_012118, intron 1 of 2)	AluSz|SINE|Alu	17469	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
27651	chr10	33005101	33005900	+	0	NA	Intergenic	Intergenic	-47270	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
205947	chr7	26098251	26098550	+	0	NA	Intergenic	Intergenic	-53798	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
44244	chr11	99015871	99016030	+	0	NA	Intergenic	Intergenic	-4999	NM_014361	53942		NM_014361	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
223902	chr9	378271	378830	+	0	NA	intron (NM_203447, intron 20 of 47)	intron (NM_203447, intron 20 of 47)	-91741	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
82172	chr16	14924201	14924450	+	0	NA	intron (NR_146231, intron 13 of 38)	intron (NR_146231, intron 13 of 38)	-1612	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
68635	chr14	89765321	89765580	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-146285	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
107036	chr18	32106501	32107630	+	0	NA	intron (NM_198128, intron 1 of 4)	intron (NM_198128, intron 1 of 4)	14459	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
76732	chr15	76282321	76282780	+	0	NA	intron (NM_001127716, intron 7 of 10)	intron (NM_001127716, intron 7 of 10)	-22398	NR_028510	7302		NR_002721		TYRO3P	-	TYRO3P protein tyrosine kinase pseudogene	pseudo
75001	chr15	63969621	63970230	+	0	NA	intron (NR_169522, intron 3 of 11)	intron (NR_169522, intron 3 of 11)	41651	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
49911	chr12	39614101	39615050	+	0	NA	intron (NM_005164, intron 2 of 9)	intron (NM_005164, intron 2 of 9)	5228	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
71009	chr14	104751451	104751550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1647	NM_021709	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
81576	chr16	9147971	9148330	+	0	NA	Intergenic	AluSz|SINE|Alu	56506	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
84541	chr16	30550671	30552260	+	0	NA	Intergenic	Intergenic	6909	NM_033410	92595		NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
69808	chr14	99207301	99208200	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	64447	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
34226	chr10	129968651	129969200	+	0	NA	Intergenic	CpG-3521	-4651	NM_001375390	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
88060	chr16	81459821	81460230	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	14855	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
153326	chr22	24279401	24279800	+	0	NA	intron (NR_103546, intron 2 of 19)	AluSz|SINE|Alu	8769	NM_001254732	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
26923	chr10	26473651	26474400	+	0	NA	intron (NM_019043, intron 2 of 14)	Kanga11a|DNA|TcMar-Tc2	35684	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
217810	chr8	33633301	33633530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-33309	NM_001305115	78986		NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding
218384	chr8	43280951	43281050	+	0	NA	Intergenic	Intergenic	-11442	NM_001002920	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
74416	chr15	59039501	59039900	+	0	NA	intron (NM_017610, intron 2 of 13)	L1MC5a|LINE|L1	51554	NM_001270530	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
58420	chr12	131921171	131921330	+	0	NA	intron (NM_003565, intron 27 of 27)	intron (NM_003565, intron 27 of 27)	-8026	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
156495	chr22	41284751	41285800	+	0	NA	intron (NM_001278651, intron 1 of 16)	intron (NM_001278651, intron 1 of 16)	912	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
116415	chr19	18004051	18004250	+	0	NA	intron (NM_001025604, intron 1 of 7)	AluSz|SINE|Alu	3026	NM_001025604	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
26892	chr10	26436121	26436430	+	0	NA	Intergenic	L2a|LINE|L2	-2066	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
105197	chr17	82307051	82307350	+	0	NA	Intergenic	AluJb|SINE|Alu	10408	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
146765	chr20	50855001	50855200	+	0	NA	intron (NM_198799, intron 4 of 4)	intron (NM_198799, intron 4 of 4)	54691	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
235199	chrX	41345621	41346330	+	0	NA	intron (NM_001193417, intron 11 of 15)	7SLRNA|srpRNA|srpRNA	11809	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
11707	chr1	91863421	91863680	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	22601	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
35833	chr11	2296721	2296980	+	0	NA	non-coding (NR_138249, exon 3 of 3)	non-coding (NR_138249, exon 3 of 3)	5068	NM_001329958	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
69101	chr14	92341801	92342000	+	0	NA	intron (NM_153647, intron 3 of 17)	intron (NM_153647, intron 3 of 17)	18735	NM_153647	123041		NM_153646	ENSG00000140090	SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 member 4	protein-coding
226521	chr9	71896021	71896480	+	0	NA	intron (NM_016014, intron 1 of 4)	intron (NM_016014, intron 1 of 4)	14943	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
162555	chr3	48648271	48648630	+	0	NA	exon (NM_001407, exon 19 of 35)	exon (NM_001407, exon 19 of 35)	-4170	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
123009	chr19	51064921	51065430	+	0	NA	promoter-TSS (NR_145465)	promoter-TSS (NR_145465)	-83	NM_015596	26085		NM_015596	ENSG00000167759	KLK13	KLK-L4|KLKL4	kallikrein related peptidase 13	protein-coding
64164	chr14	22918201	22920330	+	0	NA	promoter-TSS (NM_001077352)	promoter-TSS (NM_001077352)	-116	NM_001352764	55147		NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding
88095	chr16	81518121	81518630	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-15527	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
116688	chr19	18421531	18421990	+	0	NA	intron (NM_032627, intron 1 of 17)	intron (NM_032627, intron 1 of 17)	2362	NM_032627	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
4298	chr1	20151771	20152660	+	0	NA	Intergenic	Intergenic	-1999	NR_168502	117779438		NR_168501	ENSG00000227066	LOC117779438	-	uncharacterized LOC117779438	ncRNA
211314	chr7	103406821	103407180	+	0	NA	intron (NM_206883, intron 8 of 19)	MER119|DNA|hAT-Charlie	36211	NR_120443	375611		NM_198999	ENSG00000170615	SLC26A5	DFNB61|PRES	solute carrier family 26 member 5	protein-coding
235042	chrX	40094121	40094860	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	3468	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
32499	chr10	102716851	102717480	+	0	NA	intron (NM_001350989, intron 2 of 12)	AluSc8|SINE|Alu	2529	NM_178858	118980		NM_178858	ENSG00000156398	SFXN2	SLC56A2	sideroflexin 2	protein-coding
73553	chr15	44252101	44252630	+	0	NA	Intergenic	L1PA2|LINE|L1	-36354	NR_157849	113201		NM_138423	ENSG00000166734	GOLM2	CASC4|H63	golgi membrane protein 2	protein-coding
5526	chr1	25802751	25803350	+	0	NA	intron (NM_020451, intron 3 of 12)	intron (NM_020451, intron 3 of 12)	2857	NM_020451	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
104130	chr17	80363271	80363630	+	0	NA	intron (NM_001256071, intron 40 of 67)	intron (NM_001256071, intron 40 of 67)	-51717	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
77084	chr15	78908751	78909250	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	36011	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
155604	chr22	38798421	38798680	+	0	NA	Intergenic	L2c|LINE|L2	-4407	NM_005740	10126		NM_005740	ENSG00000100246	DNAL4	MRMV3|PIG27	dynein axonemal light chain 4	protein-coding
39445	chr11	60935121	60935480	+	0	NA	exon (NM_178031, exon 10 of 11)	exon (NM_178031, exon 10 of 11)	10840	NM_178031	54972		NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
204636	chr7	5402021	5402430	+	0	NA	intron (NM_001080495, intron 2 of 29)	FLAM_C|SINE|Alu	21321	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
21467	chr1	205591301	205592450	+	0	NA	intron (NM_181644, intron 6 of 9)	intron (NM_181644, intron 6 of 9)	-22570	NR_152721	284578		NR_027086		MFSD4A-AS1	-	MFSD4A antisense RNA 1	ncRNA
188949	chr5	160484621	160485600	+	0	NA	promoter-TSS (NR_029701)	promoter-TSS (NR_029701)	-242	NR_029701	406938		NR_029701	ENSG00000283733	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
166145	chr3	111551521	111551930	+	0	NA	intron (NR_134917, intron 2 of 14)	L1PA11|LINE|L1	9528	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
76474	chr15	74865751	74866730	+	0	NA	intron (NM_001320778, intron 1 of 9)	intron (NM_001320778, intron 1 of 9)	7125	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
155954	chr22	39703551	39703650	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	132847	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
167755	chr3	132416981	132418430	+	0	NA	5' UTR (NM_001329126, exon 1 of 57)	5' UTR (NM_001329126, exon 1 of 57)	203	NM_015268	23317		NM_015268	ENSG00000138246	DNAJC13	PARK21|RME8	DnaJ heat shock protein family (Hsp40) member C13	protein-coding
174662	chr4	41212621	41212880	+	0	NA	intron (NM_173075, intron 1 of 16)	intron (NM_173075, intron 1 of 16)	1792	NM_001330656	323		NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
102298	chr17	75342801	75343480	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	-53691	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
118800	chr19	38441751	38441930	+	0	NA	intron (NM_000540, intron 2 of 105)	intron (NM_000540, intron 2 of 105)	8149	NM_000540	6261		NM_000540	ENSG00000196218	RYR1	CCO|CMYP1A|CMYP1B|KDS|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR	ryanodine receptor 1	protein-coding
68412	chr14	81164201	81164480	+	0	NA	Intergenic	Intergenic	38494	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
162632	chr3	48791251	48791750	+	0	NA	intron (NM_004157, intron 3 of 10)	AluSc5|SINE|Alu	56374	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
163061	chr3	49939601	49941300	+	0	NA	intron (NR_146071, intron 1 of 15)	CpG	300	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
56767	chr12	120162871	120163430	+	0	NA	exon (NM_006836, exon 19 of 58)	exon (NM_006836, exon 19 of 58)	-7651	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
19613	chr1	179887901	179888250	+	0	NA	intron (NM_015602, intron 2 of 9)	intron (NM_015602, intron 2 of 9)	5790	NM_001267578	26092		NM_015602	ENSG00000143337	TOR1AIP1	LAP1|LAP1B|LAP1C|LGMD2Y	torsin 1A interacting protein 1	protein-coding
60198	chr13	40402251	40402600	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	78581	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
223535	chr8	144139721	144140180	+	0	NA	3' UTR (NM_016458, exon 6 of 6)	3' UTR (NM_016458, exon 6 of 6)	2176	NM_016458	51236		NM_016458	ENSG00000235173	HGH1	BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B	HGH1 homolog	protein-coding
238335	chrX	149538771	149539700	+	0	NA	intron (NR_027455, intron 1 of 9)	intron (NR_027455, intron 1 of 9)	517	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
110105	chr19	1553451	1553750	+	0	NA	Intergenic	Intergenic	14458	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
85453	chr16	50623671	50624030	+	0	NA	intron (NM_033119, intron 5 of 9)	(TGTG)n|Simple_repeat|Simple_repeat	-45005	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
155703	chr22	39093401	39093850	+	0	NA	Intergenic	Intergenic	-3599	NM_001166004	164668		NM_181773	ENSG00000100298	APOBEC3H	A3H|ARP-10|ARP10	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein-coding
189210	chr5	171435901	171437030	+	0	NA	intron (NM_003862, intron 3 of 4)	MIRb|SINE|MIR	16818	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
83399	chr16	27173771	27175200	+	0	NA	Intergenic	Intergenic	-29041	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
54643	chr12	92930701	92930900	+	0	NA	Intergenic	Intergenic	-1505	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
212867	chr7	130863771	130863930	+	0	NA	Intergenic	L1MA4|LINE|L1	12960	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
15842	chr1	151394871	151395030	+	0	NA	Intergenic	AluY|SINE|Alu	-4623	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
169658	chr3	171492951	171493050	+	0	NA	Intergenic	L1ME4a|LINE|L1	-32592	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
2533	chr1	9721081	9722630	+	0	NA	exon (NM_005026, exon 16 of 24)	exon (NM_005026, exon 16 of 24)	30388	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
195329	chr6	36614901	36615900	+	0	NA	Intergenic	Intergenic	7112	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
158788	chr3	9600721	9600980	+	0	NA	Intergenic	Intergenic	-47028	NM_198560	375323		NM_198560	ENSG00000156959	LHFPL4	GARLH4	LHFPL tetraspan subfamily member 4	protein-coding
93710	chr17	19502051	19503000	+	0	NA	Intergenic	AluJo|SINE|Alu	-31329	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
206433	chr7	32762951	32763250	+	0	NA	TTS (NR_036501)	TTS (NR_036501)	4814	NR_036501	401321		NR_036501		LINC00997	-	long intergenic non-protein coding RNA 997	ncRNA
60891	chr13	46149701	46150230	+	0	NA	intron (NM_002298, intron 8 of 15)	intron (NM_002298, intron 8 of 15)	32212	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
60405	chr13	40966571	40966730	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	15632	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
229171	chr9	114517651	114517950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12327	NM_015404	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
3478	chr1	15973921	15974250	+	0	NA	intron (NM_001324138, intron 1 of 14)	AluJr|SINE|Alu	2016	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
151718	chr22	17706201	17706710	+	0	NA	promoter-TSS (NM_001270733)	promoter-TSS (NM_001270733)	-203	NM_001270733	23786		NM_015367	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2 like 13	protein-coding
78853	chr15	100330201	100331680	+	0	NA	exon (NM_139057, exon 3 of 22)	exon (NM_139057, exon 3 of 22)	11035	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
215469	chr7	158270851	158270950	+	0	NA	intron (NM_001308267, intron 2 of 21)	intron (NM_001308267, intron 2 of 21)	261913	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
111798	chr19	4453321	4454030	+	0	NA	intron (NM_025241, intron 2 of 10)	intron (NM_025241, intron 2 of 10)	1626	NM_001171091	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
210737	chr7	100630651	100631030	+	0	NA	intron (NM_003227, intron 9 of 17)	intron (NM_003227, intron 9 of 17)	2810	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
169908	chr3	177664501	177664810	+	0	NA	intron (NR_047568, intron 3 of 3)	L1PA4|LINE|L1	-152210	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
221429	chr8	123779171	123779350	+	0	NA	intron (NM_001317918, intron 6 of 22)	MIR|SINE|MIR	10821	NM_001317918	157769		NM_144963	ENSG00000176853	FAM91A1	-	family with sequence similarity 91 member A1	protein-coding
170153	chr3	183527371	183527930	+	0	NA	intron (NM_130446, intron 2 of 6)	intron (NM_130446, intron 2 of 6)	-21085	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
16980	chr1	155967721	155968650	+	0	NA	intron (NM_004723, intron 2 of 21)	intron (NM_004723, intron 2 of 21)	9990	NM_001350111	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
90786	chr17	2086251	2086750	+	0	NA	intron (NM_001256827, intron 6 of 11)	intron (NM_001256827, intron 6 of 11)	2261	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
194425	chr6	33091801	33092600	+	0	NA	Intergenic	Intergenic	-11452	NM_001242525	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
209818	chr7	88101951	88102050	+	0	NA	intron (NM_021721, intron 4 of 27)	intron (NM_021721, intron 4 of 27)	-114660	NR_120517	102723885		NR_120517		SRI-AS1	-	SRI antisense RNA 1	ncRNA
91088	chr17	3536871	3537030	+	0	NA	intron (NM_145068, intron 6 of 17)	intron (NM_145068, intron 6 of 17)	20862	NM_001258205	162514		NM_145068	ENSG00000167723	TRPV3	FNEPPK2|OLMS|OLMS1|VRL3	transient receptor potential cation channel subfamily V member 3	protein-coding
195023	chr6	35471471	35471630	+	0	NA	TTS (NM_007104)	TTS (NM_007104)	1042	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
20991	chr1	202692821	202693280	+	0	NA	intron (NM_177402, intron 1 of 8)	L1PB1|LINE|L1	17404	NM_177402	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
112109	chr19	5583771	5584450	+	0	NA	Intergenic	MIR|SINE|MIR	-16076	NR_027064								
219452	chr8	73013171	73013330	+	0	NA	intron (NM_003218, intron 1 of 8)	L2c|LINE|L2	4386	NM_017489	7013		NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding
148486	chr20	64055871	64056430	+	0	NA	promoter-TSS (NM_198723)	promoter-TSS (NM_198723)	-822	NM_198723	6919		NM_003195	ENSG00000171703	TCEA2	TFIIS	transcription elongation factor A2	protein-coding
137885	chr2	200847271	200847900	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	16976	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
181518	chr5	43037171	43037430	+	0	NA	intron (NR_104651, intron 2 of 2)	CpG	3019	NM_001014279	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
75873	chr15	69717601	69718000	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-117434	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
50219	chr12	46222621	46223680	+	0	NA	intron (NM_001278387, intron 6 of 17)	MIRb|SINE|MIR	43366	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
60356	chr13	40882471	40883350	+	0	NA	intron (NR_038259, intron 1 of 5)	intron (NR_038259, intron 1 of 5)	38840	NR_038258	100616668		NR_038258		TPTE2P5	-	TPTE2 pseudogene 5	pseudo
236480	chrX	71623721	71624300	+	0	NA	Intergenic	Intergenic	-5499	NM_001504	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
217204	chr8	26343101	26343300	+	0	NA	intron (NM_002717, intron 3 of 9)	AluSz|SINE|Alu	39753	NR_144550	157489		NR_144550	ENSG00000293314	SDAD1P1	-	SDA1 domain containing 1 pseudogene 1	pseudo
88473	chr16	85056871	85057030	+	0	NA	intron (NM_001286566, intron 1 of 11)	AluJr4|SINE|Alu	-6262	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
227251	chr9	89354351	89355050	+	0	NA	intron (NM_001282690, intron 14 of 16)	MER68|LTR|ERVL	35849	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
47661	chr12	6322701	6324000	+	0	NA	intron (NR_169277, intron 14 of 16)	intron (NR_169277, intron 14 of 16)	10217	NM_001144857	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
156982	chr22	42497671	42497830	+	0	NA	Intergenic	L1MC5|LINE|L1	-2829	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
214365	chr7	149624001	149625200	+	0	NA	non-coding (NR_027788, exon 1 of 8)	non-coding (NR_027788, exon 1 of 8)	190	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
127562	chr2	42386701	42386930	+	0	NA	Intergenic	L2b|LINE|L2	-17858	NM_001319036	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
176021	chr4	82347901	82348250	+	0	NA	Intergenic	AluJb|SINE|Alu	25916	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
169371	chr3	160435851	160435950	+	0	NA	TTS (NM_001288753)	TTS (NM_001288753)	13886	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
188588	chr5	157162501	157162700	+	0	NA	exon (NM_130899, exon 2 of 2)	exon (NM_130899, exon 2 of 2)	3664	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
125726	chr2	20647401	20647800	+	0	NA	intron (NM_022460, intron 1 of 6)	MER5A|DNA|hAT-Charlie	3498	NM_022460	64342		NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
141416	chr2	240977601	240978100	+	0	NA	intron (NM_001351305, intron 27 of 31)	intron (NM_001351305, intron 27 of 31)	-10399	NR_033841	200772		NR_033841	ENSG00000233392	UICLM	CROCC2-AS1	up-regulated in colorectal cancer liver metastasis	ncRNA
156213	chr22	40332071	40333180	+	0	NA	3' UTR (NM_001162501, exon 23 of 23)	3' UTR (NM_001162501, exon 23 of 23)	-13875	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
116293	chr19	17754071	17754230	+	0	NA	promoter-TSS (NR_169258)	promoter-TSS (NR_169258)	-59	NM_001384395	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
111766	chr19	4391671	4392030	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	8697	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
88325	chr16	84503021	84503280	+	0	NA	intron (NM_020947, intron 1 of 7)	MER30|DNA|hAT-Charlie	1509	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
36772	chr11	9400351	9400650	+	0	NA	intron (NM_006391, intron 1 of 24)	AluYe5|SINE|Alu	15848	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
185503	chr5	131318301	131318830	+	0	NA	intron (NM_001375633, intron 2 of 5)	MLT1K|LTR|ERVL-MaLR	54512	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
164551	chr3	63973001	63973550	+	0	NA	intron (NM_001128149, intron 1 of 8)	intron (NM_001128149, intron 1 of 8)	5481	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
24091	chr1	235368771	235368930	+	0	NA	intron (NM_001079515, intron 1 of 16).2	AluSx|SINE|Alu	1423	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
46638	chr11	128686831	128687830	+	0	NA	promoter-TSS (NR_135072)	promoter-TSS (NR_135072)	-408	NR_135072	101929538		NR_135072	ENSG00000245008	LOC101929538	-	uncharacterized LOC101929538	ncRNA
117007	chr19	18906501	18907130	+	0	NA	intron (NM_001330469, intron 4 of 10)	intron (NM_001330469, intron 4 of 10)	-10088	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
20782	chr1	201027651	201027980	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4101	NM_001252102	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
207928	chr7	50739521	50740420	+	0	NA	intron (NM_001371008, intron 1 of 15)	L2|LINE|L2	-7617	NM_001001549	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
135976	chr2	172105771	172106800	+	0	NA	intron (NR_126376, intron 3 of 4)	intron (NR_126376, intron 3 of 4)	3279	NR_126376	104326193		NR_126376	ENSG00000236651	DLX2-DT	DLX2-AS1|TCONS_00003049	DLX2 divergent transcript	ncRNA
121444	chr19	47035421	47036980	+	0	NA	intron (NM_002517, intron 6 of 11)	CpG-14779	883	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
204114	chr7	2248951	2249530	+	0	NA	promoter-TSS (NR_160264)	promoter-TSS (NR_160264)	-71	NR_160264	4521		NM_002452	ENSG00000106268	NUDT1	MTH1	nudix hydrolase 1	protein-coding
142943	chr20	18754171	18754330	+	0	NA	intron (NM_080820, intron 5 of 5)	intron (NM_080820, intron 5 of 5)	39732	NR_026884	29075		NM_014162	ENSG00000179935	LINC00652	HSPC072	long intergenic non-protein coding RNA 652	ncRNA
237513	chrX	120029451	120029550	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-6736	NR_131238	101928969		NR_131238	ENSG00000258545	RHOXF1-AS1	-	RHOXF1 antisense RNA 1	ncRNA
159267	chr3	12954921	12956230	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	12155	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
61504	chr13	52665321	52665650	+	0	NA	intron (NM_006704, intron 8 of 12)	intron (NM_006704, intron 8 of 12)	12649	NM_001130912	10910		NM_006704	ENSG00000165416	SUGT1	SGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein-coding
212438	chr7	128392651	128393030	+	0	NA	TTS (NR_148338)	TTS (NR_148338)	6158	NR_148339	107986845		NR_148338		LOC107986845	-	uncharacterized LOC107986845	ncRNA
189037	chr5	169652351	169653080	+	0	NA	intron (NR_156756, intron 1 of 52)	intron (NR_156756, intron 1 of 52)	15440	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
226870	chr9	78112271	78112830	+	0	NA	Intergenic	MIR3|SINE|MIR	-80739	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
233356	chr9	137457951	137458390	+	0	NA	intron (NM_001130969, intron 2 of 15)	intron (NM_001130969, intron 2 of 15)	1164	NM_001130971	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228556	chr9	101561851	101562150	+	0	NA	exon (NM_019592, exon 19 of 20)	exon (NM_019592, exon 19 of 20)	28147	NM_019592	56254		NM_019592	ENSG00000155827	RNF20	BRE1|BRE1A|hBRE1	ring finger protein 20	protein-coding
220202	chr8	96152571	96152930	+	0	NA	intron (NM_001001557, intron 1 of 1)	intron (NM_001001557, intron 1 of 1)	8056	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
34703	chr10	133441321	133441780	+	0	NA	Intergenic	Intergenic	-12378	NR_149718	619207		NM_001033584	ENSG00000214279	SCART1	-	scavenger receptor family member expressed on T cells 1	protein-coding
110564	chr19	2128571	2129000	+	0	NA	intron (NM_001374799, intron 8 of 31)	CpG	22781	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
127475	chr2	42230751	42231050	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-60669	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226345	chr9	69671551	69672600	+	0	NA	intron (NM_001163, intron 1 of 12)	CpG	296	NM_001163	320		NM_001163	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta precursor protein binding family A member 1	protein-coding
134183	chr2	134302751	134302850	+	0	NA	intron (NM_001371457, intron 3 of 16)	L1ME2|LINE|L1	48728	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
131235	chr2	95526371	95527030	+	0	NA	Intergenic	CpG	-41969	NM_001164464	653192		NM_001164464	ENSG00000144010	TRIM43B	-	tripartite motif containing 43B	protein-coding
86854	chr16	67934251	67934650	+	0	NA	TTS (NM_002801)	TTS (NM_002801)	2400	NM_002801	5699		NM_002801	ENSG00000205220	PSMB10	LMP10|MECL1|PRAAS5|beta2i	proteasome 20S subunit beta 10	protein-coding
107584	chr18	48845171	48845330	+	0	NA	intron (NM_014772, intron 10 of 11)	L2c|LINE|L2	97557	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
35180	chr11	783451	783780	+	0	NA	non-coding (NR_126342, exon 3 of 4)	non-coding (NR_126342, exon 3 of 4)	6037	NR_126342	171391		NM_138291	ENSG00000255284	GATD1-DT	NS3BP	GATD1 divergent transcript	ncRNA
102266	chr17	75284871	75285030	+	0	NA	intron (NM_001126121, intron 4 of 7)	AluJo|SINE|Alu	4483	NM_001126121	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
12601	chr1	109043321	109043850	+	0	NA	Intergenic	AluY|SINE|Alu	-1357	NM_014969	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
28545	chr10	50554971	50555150	+	0	NA	intron (NM_147156, intron 2 of 10)	intron (NM_147156, intron 2 of 10)	68896	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
58893	chr13	19561551	19561650	+	0	NA	promoter-TSS (NR_073485)	promoter-TSS (NR_073485)	-26	NR_073485	93492		NM_130785	ENSG00000132958	TPTE2	TPIP	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2	protein-coding
8956	chr1	44404971	44405400	+	0	NA	promoter-TSS (NM_001319956)	promoter-TSS (NM_001319956)	25	NM_001319956	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
200935	chr6	139159501	139160200	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	24770	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
58922	chr13	19749201	19749600	+	0	NA	intron (NM_001354909, intron 4 of 8)	AluSz6|SINE|Alu	33545	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
191181	chr6	5135721	5136100	+	0	NA	TTS (NM_001318782)	TTS (NM_001318782)	12412	NR_037462	100500900		NR_037462	ENSG00000265083	MIR3691	mir-3691	microRNA 3691	ncRNA
83691	chr16	28424551	28424650	+	0	NA	intron (NM_001199142, intron 1 of 21)	(TAT)n|Simple_repeat|Simple_repeat	1854	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
27157	chr10	28380151	28380830	+	0	NA	Intergenic	L1MB4|LINE|L1	-77426	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
90582	chr17	1561521	1563480	+	0	NA	intron (NM_006224, intron 1 of 11)	CpG	292	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
197063	chr6	53651701	53652700	+	0	NA	exon (NM_001003760, exon 3 of 3)	exon (NM_001003760, exon 3 of 3)	13556	NM_001003760	401265		NM_001003760	ENSG00000124743	KLHL31	BKLHD6|KBTBD1|KLHL|bA345L23.2	kelch like family member 31	protein-coding
2163	chr1	8426171	8426700	+	0	NA	intron (NR_125999, intron 1 of 3)	AluY|SINE|Alu	1790	NR_125999	102724552		NR_125999		RERE-AS1	-	RERE antisense RNA 1	ncRNA
120442	chr19	44304371	44305230	+	0	NA	intron (NM_004234, intron 1 of 4)	CpG	225	NM_004234	9310		NM_004234	ENSG00000159917	ZNF235	ANF270|HZF6|ZFP93|ZNF270	zinc finger protein 235	protein-coding
63031	chr13	112937721	112938150	+	0	NA	Intergenic	MER101|LTR|ERV1	30703	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
90318	chr17	1114801	1115780	+	0	NA	intron (NM_001322840, intron 2 of 22).2	intron (NM_001322840, intron 2 of 22).2	-6188	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
124719	chr2	3652971	3653130	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-5150	NM_018436	55821		NM_018436	ENSG00000151360	ALLC	ALC	allantoicase	protein-coding
36576	chr11	6666121	6666580	+	0	NA	Intergenic	AluSz|SINE|Alu	-10541	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
198111	chr6	90301951	90302250	+	0	NA	Intergenic	Intergenic	-5192	NM_001170794	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
25478	chr10	6926601	6926800	+	0	NA	Intergenic	Intergenic	147102	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
136041	chr2	172494121	172494580	+	0	NA	intron (NM_001316306, intron 23 of 25)	AluJo|SINE|Alu	-28328	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
127766	chr2	44100551	44100650	+	0	NA	Intergenic	Intergenic	-68203	NM_177969	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
98745	chr17	48050671	48051080	+	0	NA	5' UTR (NM_003204, exon 2 of 6)	5' UTR (NM_003204, exon 2 of 6)	2516	NM_003204	4779		NM_003204	ENSG00000082641	NFE2L1	LCR-F1|NRF-1|NRF1|TCF11	NFE2 like bZIP transcription factor 1	protein-coding
221204	chr8	120784771	120785350	+	0	NA	intron (NM_021021, intron 1 of 6)	L1PBa|LINE|L1	23807	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
211251	chr7	102666521	102668080	+	0	NA	intron (NM_032959, intron 2 of 8)	intron (NM_032959, intron 2 of 8)	4435	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
9225	chr1	45689851	45690150	+	0	NA	intron (NM_016486, intron 1 of 2)	AluJb|SINE|Alu	1819	NM_016486	51249		NM_016486	ENSG00000159596	TMEM69	C1orf154	transmembrane protein 69	protein-coding
125522	chr2	12816601	12817200	+	0	NA	Intergenic	Intergenic	79533	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
133165	chr2	112755321	112755780	+	0	NA	intron (NM_001304361, intron 4 of 8)	intron (NM_001304361, intron 4 of 8)	9059	NM_152515	150468		NM_152515	ENSG00000169607	CKAP2L	-	cytoskeleton associated protein 2 like	protein-coding
177806	chr4	123420151	123420650	+	0	NA	Intergenic	Intergenic	20860	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
30647	chr10	80465371	80466750	+	0	NA	intron (NM_001351268, intron 2 of 9)	intron (NM_001351268, intron 2 of 9)	-2181	NM_001351272	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
39558	chr11	61125121	61125780	+	0	NA	intron (NM_001346456, intron 9 of 10)	intron (NM_001346456, intron 9 of 10)	22961	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
111562	chr19	4052521	4053000	+	0	NA	intron (NM_015898, intron 2 of 2)	intron (NM_015898, intron 2 of 2)	12769	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
80535	chr16	2771671	2773200	+	0	NA	intron (NM_207013, intron 3 of 4)	intron (NM_207013, intron 3 of 4)	4845	NM_207013	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
214900	chr7	151439501	151441000	+	0	NA	promoter-TSS (NM_001308292)	promoter-TSS (NM_001308292)	-80	NM_001308292	155051		NM_144727	ENSG00000127377	CRYGN	-	crystallin gamma N	protein-coding
117444	chr19	19662861	19665600	+	0	NA	promoter-TSS (NM_020410)	promoter-TSS (NM_020410)	-554	NM_020410	57130		NM_020410	ENSG00000105726	ATP13A1	ATP13A|CGI-152	ATPase 13A1	protein-coding
216374	chr8	17724221	17724650	+	0	NA	intron (NR_156437, intron 3 of 13)	intron (NR_156437, intron 3 of 13)	-1860	NM_001166393	57509		NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1	microtubule associated scaffold protein 1	protein-coding
97220	chr17	42784071	42784600	+	0	NA	intron (NM_032387, intron 3 of 18)	intron (NM_032387, intron 3 of 18)	3725	NM_032387	65266		NM_032387	ENSG00000126562	WNK4	PHA2B|PRKWNK4	WNK lysine deficient protein kinase 4	protein-coding
56949	chr12	120480801	120481700	+	0	NA	intron (NM_001037494, intron 1 of 2)	MER21C|LTR|ERVL	11408	NM_001037494	8655		NM_003746	ENSG00000088986	DYNLL1	DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1	dynein light chain LC8-type 1	protein-coding
20586	chr1	198751771	198752150	+	0	NA	intron (NM_002838, intron 29 of 32)	intron (NM_002838, intron 29 of 32)	107022	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
38664	chr11	46387771	46388600	+	0	NA	intron (NM_001366692, intron 1 of 1)	intron (NM_001366692, intron 1 of 1)	3483	NM_001366692	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
121007	chr19	45780801	45781000	+	0	NA	promoter-TSS (NM_001081563)	promoter-TSS (NM_001081563)	-297	NM_001081563	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
69607	chr14	97458321	97459980	+	0	NA	intron (NR_110166, intron 1 of 4)	intron (NR_110166, intron 1 of 4)	334	NR_110166	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
205968	chr7	26164301	26164500	+	0	NA	intron (NM_004289, intron 1 of 3)	L1PA5|LINE|L1	12202	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
4883	chr1	23784851	23785150	+	0	NA	intron (NM_020362, intron 3 of 5)	intron (NM_020362, intron 3 of 5)	-6145	NM_007260	11313		NM_007260	ENSG00000011009	LYPLA2	APT-2|APT2|DJ886K2.4	lysophospholipase 2	protein-coding
57578	chr12	122326751	122327050	+	0	NA	intron (NM_001247997, intron 17 of 25)	intron (NM_001247997, intron 17 of 25)	-60406	NM_001351021	65082		NM_022916	ENSG00000139719	VPS33A	MPSPS	VPS33A core subunit of CORVET and HOPS complexes	protein-coding
124687	chr2	3516221	3516950	+	0	NA	5' UTR (NM_001306077, exon 1 of 4)	5' UTR (NM_001306077, exon 1 of 4)	1162	NM_001306077	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
214650	chr7	150756811	150757380	+	0	NA	Intergenic	Intergenic	19747	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
213383	chr7	135970751	135970850	+	0	NA	intron (NM_001128619, intron 1 of 3)	intron (NM_001128619, intron 1 of 3)	6559	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
118678	chr19	37837771	37837980	+	0	NA	intron (NR_040015, intron 2 of 5)	L1PA2|LINE|L1	17321	NR_040015	100631378		NR_040015	ENSG00000290722	WDR87BP	-	WD repeat domain 87B, pseudogene	ncRNA
114156	chr19	11343901	11344100	+	0	NA	intron (NM_001321113, intron 3 of 3)	AluSq2|SINE|Alu	2268	NM_001321114	374882		NM_033408	ENSG00000105518	TMEM205	UNQ501	transmembrane protein 205	protein-coding
111475	chr19	3950001	3950500	+	0	NA	Intergenic	Intergenic	11262	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
202751	chr6	159035121	159036230	+	0	NA	3' UTR (NM_001278733, exon 6 of 6)	3' UTR (NM_001278733, exon 6 of 6)	6678	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
146449	chr20	49680871	49681430	+	0	NA	intron (NM_004776, intron 1 of 8)	AluJr4|SINE|Alu	32728	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
13246	chr1	112701801	112702000	+	0	NA	intron (NM_001042678, intron 4 of 4)	intron (NM_001042678, intron 4 of 4)	5156	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
228752	chr9	110148251	110149150	+	0	NA	intron (NM_147150, intron 8 of 9)	intron (NM_147150, intron 8 of 9)	23199	NM_001136562	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
4420	chr1	21245051	21245350	+	0	NA	intron (NM_001397, intron 9 of 18)	intron (NM_001397, intron 9 of 18)	34415	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
34135	chr10	128045551	128045650	+	0	NA	intron (NM_001323354, intron 2 of 19)	intron (NM_001323354, intron 2 of 19)	-2012	NM_130435	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
232278	chr9	134435371	134435730	+	0	NA	intron (NM_001291921, intron 8 of 8)	intron (NM_001291921, intron 8 of 8)	28990	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
92023	chr17	7472921	7474030	+	0	NA	intron (NM_020899, intron 1 of 3)	AluSx|SINE|Alu	6156	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
133504	chr2	119971651	119972150	+	0	NA	intron (NM_002830, intron 26 of 26)	L1MB7|LINE|L1	-41177	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
128304	chr2	54634601	54635350	+	0	NA	intron (NM_178313, intron 16 of 30)	intron (NM_178313, intron 16 of 30)	76581	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
118351	chr19	35642871	35644000	+	0	NA	exon (NM_014209, exon 5 of 7)	exon (NM_014209, exon 5 of 7)	1690	NM_001304549	2116		NM_014209	ENSG00000105672	ETV2	ER71|ETSRP71	ETS variant transcription factor 2	protein-coding
226958	chr9	79858501	79859100	+	0	NA	intron (NR_121213, intron 1 of 2)	MER101|LTR|ERV1	34270	NR_121213	101927477		NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
22685	chr1	223839251	223839350	+	0	NA	intron (NM_001031685, intron 1 of 17)	MIRb|SINE|MIR	6647	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
81252	chr16	4611301	4612130	+	0	NA	intron (NM_001330467, intron 1 of 2)	intron (NM_001330467, intron 1 of 2)	3173	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
161863	chr3	45868651	45868950	+	0	NA	intron (NM_001276379, intron 2 of 9)	intron (NM_001276379, intron 2 of 9)	-17704	NM_001256369	10803		NM_006641	ENSG00000173585	CCR9	CC-CKR-9|CDw199|GPR-9-6|GPR28	C-C motif chemokine receptor 9	protein-coding
129695	chr2	70638601	70638800	+	0	NA	Intergenic	HAL1|LINE|L1	-84874	NM_003236	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
23510	chr1	228792851	228793380	+	0	NA	Intergenic	Intergenic	57636	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
73082	chr15	40931551	40931650	+	0	NA	exon (NM_019074, exon 4 of 11)	exon (NM_019074, exon 4 of 11)	2260	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
40976	chr11	65377501	65378250	+	0	NA	intron (NR_147972, intron 6 of 8)	intron (NR_147972, intron 6 of 8)	4096	NM_001352384	283130		NM_182556	ENSG00000162241	SLC25A45	-	solute carrier family 25 member 45	protein-coding
128031	chr2	47323051	47323530	+	0	NA	intron (NR_110207, intron 1 of 2)	intron (NR_110207, intron 1 of 2)	-12025	NR_001568	618		NR_001568	ENSG00000236824	BCYRN1	BC200|BC200a|LINC00004|NCRNA00004	brain cytoplasmic RNA 1	ncRNA
50707	chr12	48931351	48931650	+	0	NA	Intergenic	Intergenic	-5953	NM_001143782	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
103661	chr17	78779351	78780500	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	2283	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
102032	chr17	74858271	74858680	+	0	NA	intron (NM_001278553, intron 1 of 11)	intron (NM_001278553, intron 1 of 11)	1409	NR_103735	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
205996	chr7	26193851	26195930	+	0	NA	intron (NM_002137, intron 7 of 10)	AluSg|SINE|Alu	5856	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
226608	chr9	73165871	73166030	+	0	NA	intron (NM_000700, intron 9 of 12)	intron (NM_000700, intron 9 of 12)	14085	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
189128	chr5	170744321	170744650	+	0	NA	Intergenic	Intergenic	-39234	NM_001291985	2568		NM_014211	ENSG00000094755	GABRP	-	gamma-aminobutyric acid type A receptor subunit pi	protein-coding
79269	chr16	521501	522100	+	0	NA	3' UTR (NM_014700, exon 14 of 14)	3' UTR (NM_014700, exon 14 of 14)	5607	NR_024121	64493		NR_024121		LINC00235	C16orf10|LA16c-356B8.1|NCRNA00235	long intergenic non-protein coding RNA 235	ncRNA
99166	chr17	49394671	49395450	+	0	NA	Intergenic	Intergenic	19798	NM_001281496	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
12309	chr1	100926921	100928200	+	0	NA	intron (NM_133496, intron 8 of 10)	L2a|LINE|L2	31470	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
81434	chr16	8861271	8861430	+	0	NA	TTS (NR_147908)	TTS (NR_147908)	460	NM_001278265	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
140058	chr2	231398651	231399350	+	0	NA	3' UTR (NM_145236, exon 2 of 2)	3' UTR (NM_145236, exon 2 of 2)	3290	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
213089	chr7	131105201	131107600	+	0	NA	intron (NR_109852, intron 2 of 5)	CpG	630	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
197369	chr6	73472071	73472230	+	0	NA	intron (NM_133645, intron 3 of 12)	HAL1|LINE|L1	10413	NM_012123	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
177587	chr4	120071201	120071680	+	0	NA	Intergenic	Intergenic	-4592	NM_002358	4085		NM_002358	ENSG00000164109	MAD2L1	HSMAD2|MAD2	mitotic arrest deficient 2 like 1	protein-coding
66465	chr14	61558271	61559580	+	0	NA	intron (NR_110417, intron 3 of 3)	MER63A|DNA|hAT-Blackjack	11269	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
186986	chr5	139705401	139706630	+	0	NA	Intergenic	Intergenic	30572	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
28458	chr10	49194101	49194700	+	0	NA	Intergenic	Intergenic	-6009	NM_001288743	170371		NM_001010863	ENSG00000204161	TMEM273	C10orf128	transmembrane protein 273	protein-coding
194316	chr6	32833571	32834300	+	0	NA	intron (NM_000544, intron 5 of 11)	THE1B|LTR|ERVL-MaLR	4804	NM_001290043	6891		NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
132937	chr2	111445271	111445430	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	49811	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
202939	chr6	160667901	160668100	+	0	NA	Intergenic	Intergenic	-3725	NM_005577	4018		NM_005577	ENSG00000198670	LPA	AK38|APOA|LP	lipoprotein(a)	protein-coding
195590	chr6	37540251	37540750	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	14922	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
219627	chr8	80137951	80138050	+	0	NA	intron (NR_105035, intron 1 of 6)	AluSp|SINE|Alu	33121	NR_105036	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
237132	chrX	106726251	106727100	+	0	NA	promoter-TSS (NM_194463)	promoter-TSS (NM_194463)	-26	NM_194463	79589		NM_024539	ENSG00000133135	RNF128	GRAIL	ring finger protein 128	protein-coding
45049	chr11	117046601	117047100	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJb|SINE|Alu	51578	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
179460	chr4	184451351	184451650	+	0	NA	intron (NM_002199, intron 1 of 8)	MIRb|SINE|MIR	23050	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
41041	chr11	65453901	65454200	+	0	NA	Intergenic	AluJb|SINE|Alu	-1236	NR_160548	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
62096	chr13	94675051	94675230	+	0	NA	Intergenic	Intergenic	33346	NR_120417	101927248		NR_120417	ENSG00000238230	LINC00391	-	long intergenic non-protein coding RNA 391	ncRNA
44076	chr11	95660121	95660600	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	129422	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
205640	chr7	22696451	22697050	+	0	NA	Intergenic	Intergenic	-30450	NM_001318095	3569		NM_000600	ENSG00000136244	IL6	BSF-2|BSF2|CDF|HGF|HSF|IFN-beta-2|IFNB2|IL-6	interleukin 6	protein-coding
179791	chr5	368571	369330	+	0	NA	intron (NR_165159, intron 5 of 13)	intron (NR_165159, intron 5 of 13)	46340	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
127798	chr2	44291751	44291850	+	0	NA	intron (NM_000341, intron 4 of 9)	intron (NM_000341, intron 4 of 9)	16320	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
47369	chr12	2395551	2395650	+	0	NA	intron (NM_199460, intron 3 of 49)	intron (NM_199460, intron 3 of 49)	125824	NR_046769	100874370		NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
66490	chr14	61667851	61667950	+	0	NA	Intergenic	L2c|LINE|L2	-27613	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
103805	chr17	79084521	79084780	+	0	NA	exon (NM_001042573, exon 11 of 14)	exon (NM_001042573, exon 11 of 14)	9826	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
82636	chr16	19069751	19070050	+	0	NA	intron (NM_001370489, intron 1 of 5)	AluSz|SINE|Alu	1253	NM_001370491	10229		NM_016138	ENSG00000167186	COQ7	CAT5|CLK-1|CLK1|COQ10D8|HMNR9	coenzyme Q7, hydroxylase	protein-coding
105146	chr17	82246821	82247730	+	0	NA	intron (NM_139062, intron 8 of 9)	intron (NM_139062, intron 8 of 9)	10607	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
217429	chr8	28411521	28412780	+	0	NA	Intergenic	CpG	-25690	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
113982	chr19	10823451	10823750	+	0	NA	intron (NM_001005362, intron 15 of 19)	intron (NM_001005362, intron 15 of 19)	-5373	NR_106851	102466737		NR_106851	ENSG00000275640	MIR6793	hsa-mir-6793	microRNA 6793	ncRNA
18711	chr1	167449801	167450030	+	0	NA	intron (NM_198053, intron 1 of 7)	AluSx|SINE|Alu	68614	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
206221	chr7	28685221	28685970	+	0	NA	promoter-TSS (NM_001011666)	promoter-TSS (NM_001011666)	-538	NM_001011666	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
44283	chr11	102304521	102305330	+	0	NA	Intergenic	Intergenic	-12559	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
165481	chr3	99816771	99818780	+	0	NA	promoter-TSS (NM_032359)	promoter-TSS (NM_032359)	-87	NM_032359	84319		NM_032359	ENSG00000184220	CMSS1	C3orf26	cms1 ribosomal small subunit homolog	protein-coding
141325	chr2	240556601	240557100	+	0	NA	intron (NR_148697, intron 1 of 13)	intron (NR_148697, intron 1 of 13)	1138	NM_017844	51281		NM_016552	ENSG00000144504	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding
109058	chr18	79856751	79857450	+	0	NA	Intergenic	Intergenic	-6568	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
184824	chr5	111276671	111277300	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	52601	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
113213	chr19	8457221	8457580	+	0	NA	intron (NM_001297418, intron 3 of 13)	intron (NM_001297418, intron 3 of 13)	12425	NM_031203	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
29162	chr10	68724651	68725330	+	0	NA	intron (NM_018237, intron 2 of 24)	AluSp|SINE|Alu	3751	NR_104262	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
153293	chr22	24170601	24171200	+	0	NA	intron (NM_012295, intron 33 of 36)	intron (NM_012295, intron 33 of 36)	-10587	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
74175	chr15	55403571	55404030	+	0	NA	intron (NR_037923, intron 8 of 15)	intron (NR_037923, intron 8 of 15)	4559	NM_020739	9236		NM_004748	ENSG00000260916	CCPG1	CPR8	cell cycle progression 1	protein-coding
238470	chrX	153336001	153336650	+	0	NA	TTS (NR_162143)	TTS (NR_162143)	863	NR_162143	113219460		NR_162143		MIR12129	-	microRNA 12129	ncRNA
162389	chr3	48112201	48112930	+	0	NA	Intergenic	MER21-int|LTR|ERVL	-23717	NM_001384844	4134		NM_002375	ENSG00000047849	MAP4	-	microtubule associated protein 4	protein-coding
28810	chr10	62236551	62237050	+	0	NA	intron (NM_145307, intron 5 of 11)	L1MA9|LINE|L1	32044	NM_001282941	219790		NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
134458	chr2	143184671	143184930	+	0	NA	intron (NM_018460, intron 2 of 13)	AluJr|SINE|Alu	55381	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
146476	chr20	49794821	49795180	+	0	NA	Intergenic	Intergenic	-17713	NM_001260491	23315		NM_015266	ENSG00000197818	SLC9A8	NHE-8|NHE8	solute carrier family 9 member A8	protein-coding
151273	chr21	45440471	45440630	+	0	NA	intron (NM_001379500, intron 2 of 41)	CpG	-14972	NM_030582	80781		NM_030582	ENSG00000182871	COL18A1	GLCC|KNO|KNO1|KS	collagen type XVIII alpha 1 chain	protein-coding
194537	chr6	33311651	33311750	+	0	NA	intron (NM_172209, intron 2 of 6).2	intron (NM_172209, intron 2 of 6).2	2378	NM_003190	6892		NM_003190	ENSG00000231925	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein	protein-coding
31854	chr10	99859721	99860030	+	0	NA	Intergenic	FRAM|SINE|Alu	54217	NM_001318327	23268		NM_015221	ENSG00000107554	DNMBP	ARHGEF36|CTRCT48|TUBA	dynamin binding protein	protein-coding
47167	chr12	777451	778130	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	24867	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
54684	chr12	93411051	93411850	+	0	NA	intron (NM_003348, intron 1 of 3)	intron (NM_003348, intron 1 of 3)	30497	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
95245	chr17	35377121	35377580	+	0	NA	Intergenic	Intergenic	-3729	NM_001104587	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
220185	chr8	95220501	95220900	+	0	NA	Intergenic	Intergenic	-4326	NR_046232	619344		NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
172787	chr4	2944901	2945400	+	0	NA	exon (NM_003703, exon 12 of 19)	exon (NM_003703, exon 12 of 19)	9604	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
159248	chr3	12928521	12928980	+	0	NA	intron (NM_014869, intron 3 of 13)	intron (NM_014869, intron 3 of 13)	38980	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
46014	chr11	121650371	121651750	+	0	NA	Intergenic	Intergenic	-169271	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
206843	chr7	37359801	37360000	+	0	NA	intron (NM_001206480, intron 1 of 21)	L4_A_Mam|LINE|RTE-X	-6232	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
6154	chr1	27399121	27399750	+	0	NA	Intergenic	Intergenic	6813	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
192233	chr6	18836151	18836250	+	0	NA	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	264416	NR_030312	693125		NR_030312	ENSG00000207775	MIR548A1	MIRN548A1	microRNA 548a-1	ncRNA
186578	chr5	138493451	138494250	+	0	NA	Intergenic	Intergenic	28371	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
96659	chr17	40647051	40649330	+	0	NA	promoter-TSS (NM_003079)	promoter-TSS (NM_003079)	-372	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
169899	chr3	177624651	177625080	+	0	NA	intron (NR_047568, intron 2 of 3)	MLT1J2|LTR|ERVL-MaLR	182944	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
92393	chr17	8291921	8292980	+	0	NA	intron (NM_001320877, intron 1 of 3)	intron (NM_001320877, intron 1 of 3)	2893	NR_135484	399512		NM_201520	ENSG00000125434	SLC25A35	-	solute carrier family 25 member 35	protein-coding
175929	chr4	80359901	80360300	+	0	NA	intron (NM_001206997, intron 1 of 6)	L1PA13|LINE|L1	24370	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
158972	chr3	10253821	10254100	+	0	NA	intron (NM_014760, intron 2 of 7)	intron (NM_014760, intron 2 of 7)	5501	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
181740	chr5	50702621	50703630	+	0	NA	intron (NM_024615, intron 2 of 25)	AluJb|SINE|Alu	35711	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
144774	chr20	36623871	36624800	+	0	NA	intron (NM_175077, intron 5 of 7)	L2a|LINE|L2	18556	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
268	chr1	927951	928050	+	0	NA	intron (NM_001385641, intron 2 of 13)	intron (NM_001385641, intron 2 of 13)	2269	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
210312	chr7	99471271	99472100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1205	NM_001013258	285989		NM_213603	ENSG00000198556	ZNF789	-	zinc finger protein 789	protein-coding
122598	chr19	49763221	49763480	+	0	NA	promoter-TSS (NM_021733)	promoter-TSS (NM_021733)	-44	NM_021733	60385		NM_021733	ENSG00000126467	TSKS	PPP1R161|STK22S1|TSKS1|TSSKS	testis specific serine kinase substrate	protein-coding
221810	chr8	127992771	127994550	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	-15238	NR_031611	100302170		NR_031611	ENSG00000283200	MIR1206	MIRN1206|hsa-mir-1206	microRNA 1206	ncRNA
203235	chr6	168895071	168895500	+	0	NA	Intergenic	Intergenic	69097	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
101356	chr17	67180421	67180900	+	0	NA	intron (NM_001330447, intron 12 of 32)	AluYm1|SINE|Alu	-64116	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
67247	chr14	68977321	68978600	+	0	NA	intron (NM_001130004, intron 1 of 21)	CpG	1342	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
77043	chr15	78767801	78768330	+	0	NA	intron (NM_014272, intron 17 of 23)	intron (NM_014272, intron 17 of 23)	16028	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
41610	chr11	66411351	66411650	+	0	NA	Intergenic	Intergenic	-9504	NM_001318804	266743		NM_178864	ENSG00000174576	NPAS4	Le-PAS|NXF|PASD10|bHLHe79	neuronal PAS domain protein 4	protein-coding
12107	chr1	100038701	100039900	+	0	NA	intron (NM_033055, intron 1 of 11)	intron (NM_033055, intron 1 of 11)	1205	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
81772	chr16	11507021	11507280	+	0	NA	intron (NM_001370704, intron 8 of 66)	intron (NM_001370704, intron 8 of 66)	20097	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
118857	chr19	38648471	38648730	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	951	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
204755	chr7	5593401	5594190	+	0	NA	intron (NM_003088, intron 1 of 4)	CpG	979	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
199405	chr6	116536151	116536550	+	0	NA	intron (NM_153036, intron 1 of 2)	intron (NM_153036, intron 1 of 2)	7307	NM_001256889	221301		NM_153036	ENSG00000164451	CALHM4	C6orf78|FAM26D	calcium homeostasis modulator family member 4	protein-coding
76536	chr15	75161251	75161550	+	0	NA	Intergenic	Intergenic	-40482	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
46837	chr11	132126371	132126530	+	0	NA	intron (NR_147852, intron 1 of 7)	intron (NR_147852, intron 1 of 7)	-157852	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript	ncRNA
144673	chr20	36307101	36307450	+	0	NA	intron (NM_001365621, intron 1 of 12)	CpG	936	NM_001365621	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
172619	chr4	2516701	2516900	+	0	NA	TTS (NM_002938)	TTS (NM_002938)	-18575	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
167636	chr3	129601651	129602150	+	0	NA	intron (NM_015103, intron 1 of 35)	L2b|LINE|L2	4776	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
227314	chr9	89430401	89430900	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	49240	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
32563	chr10	103371721	103372180	+	0	NA	intron (NM_139052, intron 1 of 9)	AluSg|SINE|Alu	3974	NM_006951	6877		NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
1447	chr1	2645621	2646350	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-12969	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
228880	chr9	112514771	112515280	+	0	NA	intron (NM_133465, intron 1 of 3)	SVA_F|Retroposon|SVA	-27381	NM_001350649	100133204		NM_001350649		HSDL2-AS1	C9orf147	HSDL2 antisense RNA 1	ncRNA
75363	chr15	65606171	65606530	+	0	NA	intron (NM_001207059, intron 1 of 10)	intron (NM_001207059, intron 1 of 10)	4781	NM_001207058	81556		NM_030800	ENSG00000138614	INTS14	C15orf44|VWA9	integrator complex subunit 14	protein-coding
72240	chr15	30434421	30434680	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-20290	NM_001282484	101059918		NM_001282484	ENSG00000186399	GOLGA8R	-	golgin A8 family member R	protein-coding
17072	chr1	156113871	156117930	+	0	NA	intron (NM_170707, intron 1 of 11)	intron (NM_170707, intron 1 of 11)	1189	NM_005572	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
53593	chr12	68001421	68001680	+	0	NA	intron (NR_104124, intron 2 of 4)	intron (NR_104124, intron 2 of 4)	12105	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
170488	chr3	186097671	186098230	+	0	NA	intron (NM_004454, intron 5 of 12)	intron (NM_004454, intron 5 of 12)	11139	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
62326	chr13	99062801	99063200	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	23694	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
105179	chr17	82280801	82281450	+	0	NA	Intergenic	Intergenic	-7375	NR_110578	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
235177	chrX	41273601	41273880	+	0	NA	Intergenic	AluSz|SINE|Alu	-1999	NR_135616	105373185		NR_135616	ENSG00000223714	LINC02601	-	long intergenic non-protein coding RNA 2601	ncRNA
116326	chr19	17828221	17828680	+	0	NA	intron (NM_000215, intron 23 of 23)	AluJb|SINE|Alu	-6931	NM_001265587	3640		NM_005543	ENSG00000248099	INSL3	RLF|RLNL|ley-I-L	insulin like 3	protein-coding
237964	chrX	133749271	133749830	+	0	NA	intron (NM_001164617, intron 3 of 8)	intron (NM_001164617, intron 3 of 8)	-147893	NR_148713	110806308		NR_148713	ENSG00000286096	GPC3-AS1	-	GPC3 antisense RNA 1	ncRNA
227087	chr9	85712821	85713080	+	0	NA	intron (NM_001330701, intron 1 of 25)	intron (NM_001330701, intron 1 of 25)	29004	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
113495	chr19	10087001	10087680	+	0	NA	intron (NM_018381, intron 3 of 7)	intron (NM_018381, intron 3 of 7)	1023	NM_001308277	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
80114	chr16	2030051	2030530	+	0	NA	intron (NM_001130012, intron 2 of 6)	intron (NM_001130012, intron 2 of 6)	-3004	NM_001252073	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
153415	chr22	24951971	24952900	+	0	NA	Intergenic	CpG	-5740	NM_001001663	255349		NM_001001663	ENSG00000206069	LHFPL7	TMEM211|bA9F11.1	LHFPL tetraspan subfamily member 7	protein-coding
121834	chr19	48117971	48118130	+	0	NA	intron (NR_135497, intron 25 of 27)	intron (NR_135497, intron 25 of 27)	-7198	NM_001159322	8605		NM_003706	ENSG00000105499	PLA2G4C	CPLA2-gamma	phospholipase A2 group IVC	protein-coding
16482	chr1	154745201	154745700	+	0	NA	intron (NM_001204087, intron 3 of 8)	intron (NM_001204087, intron 3 of 8)	114426	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
110282	chr19	1821651	1822980	+	0	NA	non-coding (NR_152847, exon 1 of 4)	non-coding (NR_152847, exon 1 of 4)	226	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
170615	chr3	187003971	187004330	+	0	NA	intron (NM_173216, intron 2 of 7)	MSTA|LTR|ERVL-MaLR	-17705	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
107262	chr18	42024871	42025430	+	0	NA	intron (NM_002647, intron 13 of 24)	intron (NM_002647, intron 13 of 24)	69916	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
164928	chr3	71204001	71204400	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	40877	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
89926	chr16	89723501	89725430	+	0	NA	intron (NR_110122, intron 4 of 10)	AluSz6|SINE|Alu	2928	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
207551	chr7	44845701	44846690	+	0	NA	intron (NM_201516, intron 1 of 3)	intron (NM_201516, intron 1 of 3)	1892	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
117050	chr19	18940961	18942130	+	0	NA	promoter-TSS (NM_004838)	promoter-TSS (NM_004838)	-328	NM_004838	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
212848	chr7	130840951	130841330	+	0	NA	Intergenic	AluY|SINE|Alu	35670	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
21294	chr1	204454751	204454850	+	0	NA	intron (NM_001377335, intron 13 of 35)	intron (NM_001377335, intron 13 of 35)	40005	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
167114	chr3	127668971	127669400	+	0	NA	exon (NM_015720, exon 6 of 8)	exon (NM_015720, exon 6 of 8)	-3753	NM_032548	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
110913	chr19	2768951	2769050	+	0	NA	exon (NM_003021, exon 2 of 12)	exon (NM_003021, exon 2 of 12)	14273	NM_003021	6449		NM_003021	ENSG00000104969	SGTA	SGT|SGT1|Vpu|alphaSGT|hSGT	small glutamine rich tetratricopeptide repeat co-chaperone alpha	protein-coding
153688	chr22	29167301	29167700	+	0	NA	3' UTR (NM_032045, exon 10 of 10)	3' UTR (NM_032045, exon 10 of 10)	-38396	NM_133455	129080		NM_133455	ENSG00000186998	EMID1	EMI5|EMU1	EMI domain containing 1	protein-coding
150993	chr21	44352271	44352730	+	0	NA	Intergenic	Intergenic	-1101	NM_001320351	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
55914	chr12	109743471	109743630	+	0	NA	intron (NR_026661, intron 1 of 3)	intron (NR_026661, intron 1 of 3)	29725	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
127330	chr2	39093371	39093730	+	0	NA	intron (NM_001382394, intron 1 of 22)	intron (NM_001382394, intron 1 of 22)	27501	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
183322	chr5	76714401	76714800	+	0	NA	Intergenic	Intergenic	-1526	NM_001992	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
160385	chr3	27960351	27960450	+	0	NA	Intergenic	Intergenic	-126264	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
48468	chr12	9760071	9760230	+	0	NA	intron (NM_001781, intron 1 of 4)	intron (NM_001781, intron 1 of 4)	751	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
223427	chr8	143951641	143953760	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	1134	NM_201379	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
156778	chr22	41896951	41897500	+	0	NA	intron (NR_103834, intron 15 of 21)	intron (NR_103834, intron 15 of 21)	-3719	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
24629	chr1	246597551	246597850	+	0	NA	intron (NM_001139459, intron 2 of 8)	intron (NM_001139459, intron 2 of 8)	31244	NM_152609	163882		NM_152609	ENSG00000162852	CNST	C1orf71|PPP1R64	consortin, connexin sorting protein	protein-coding
61713	chr13	74096021	74096680	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	37579	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
120711	chr19	45248371	45249500	+	0	NA	Intergenic	Intergenic	-2336	NM_001199867	57787		NM_031417	ENSG00000007047	MARK4	MARK4L|MARK4S|MARKL1|MARKL1L|PAR-1D	microtubule affinity regulating kinase 4	protein-coding
48100	chr12	7609301	7609500	+	0	NA	Intergenic	L1PA13|LINE|L1	56508	NM_001644	339		NM_001644	ENSG00000111701	APOBEC1	APO1|APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme catalytic subunit 1	protein-coding
151540	chr21	46514401	46514600	+	0	NA	intron (NM_206891, intron 8 of 19)	L1ME3A|LINE|L1	52029	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
11219	chr1	88872071	88872630	+	0	NA	intron (NM_001514, intron 2 of 6)	AluSq2|SINE|Alu	19217	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
34514	chr10	132611921	132612380	+	0	NA	intron (NM_005539, intron 2 of 15)	intron (NM_005539, intron 2 of 15)	-69125	NM_001321042	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
215745	chr8	1831571	1832130	+	0	NA	intron (NM_001308153, intron 2 of 29)	MER91B|DNA|hAT-Tip100	7924	NM_001308153	9639		NM_014629	ENSG00000104728	ARHGEF10	GEF10|SNCV	Rho guanine nucleotide exchange factor 10	protein-coding
15211	chr1	149390231	149391550	+	0	NA	exon (NM_001364013, exon 1 of 5)	exon (NM_001364013, exon 1 of 5)	252	NM_001364013	100996717		NM_001364012	ENSG00000286219	NOTCH2NLC	ETM6|N2N|NIID|NOTCH2NL|NOTCH2NLA|OPDM3	notch 2 N-terminal like C	protein-coding
162083	chr3	46884551	46885550	+	0	NA	intron (NM_001184744, intron 2 of 14)	MIRc|SINE|MIR	2801	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
669	chr1	1370501	1372630	+	0	NA	Intergenic	Intergenic	3642	NM_017900	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
222189	chr8	133036021	133036280	+	0	NA	TTS (NM_006748)	TTS (NM_006748)	10431	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
4353	chr1	20660721	20662380	+	0	NA	promoter-TSS (NM_005216)	promoter-TSS (NM_005216)	-181	NM_005216	1650		NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein-coding
175194	chr4	56543721	56543980	+	0	NA	intron (NM_001256475, intron 1 of 8)	Kanga2_a|DNA|TcMar-Tc2	13244	NM_001256475	100506564		NM_001256475	ENSG00000249693	SPMAP2L	THEGL	sperm microtubule associated protein 2 like	protein-coding
68910	chr14	91357751	91358350	+	0	NA	intron (NM_001080414, intron 4 of 29)	intron (NM_001080414, intron 4 of 29)	59770	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
141541	chr2	241314171	241317480	+	0	NA	promoter-TSS (NM_001282972)	promoter-TSS (NM_001282972)	17	NM_005336	3069		NM_005336	ENSG00000115677	HDLBP	HBP|PRO2900|VGL	high density lipoprotein binding protein	protein-coding
9277	chr1	46344101	46345180	+	0	NA	intron (NM_001256127, intron 1 of 5)	intron (NM_001256127, intron 1 of 5)	3462	NM_001256127	387338		NM_199044	ENSG00000117481	NSUN4	SHTAP	NOP2/Sun RNA methyltransferase 4	protein-coding
27359	chr10	30718321	30718750	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4684	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
122566	chr19	49667571	49668050	+	0	NA	intron (NM_001282521, intron 3 of 3)	AluSz6|SINE|Alu	1877	NM_138639	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
127284	chr2	38731701	38732300	+	0	NA	intron (NM_138801, intron 6 of 6)	intron (NM_138801, intron 6 of 6)	19361	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
49152	chr12	14948721	14949200	+	0	NA	promoter-TSS (NR_135637)	promoter-TSS (NR_135637)	-64	NR_135637	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
208256	chr7	65647421	65648400	+	0	NA	promoter-TSS (NR_027392)	promoter-TSS (NR_027392)	56	NR_027392	644619		NR_027392	ENSG00000273024	INTS4P2	INTS4L2	integrator complex subunit 4 pseudogene 2	pseudo
200502	chr6	135560801	135561000	+	0	NA	intron (NR_152845, intron 2 of 4)	L1PA8|LINE|L1	63099	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
36702	chr11	8907521	8907780	+	0	NA	intron (NM_005418, intron 1 of 22)	intron (NM_005418, intron 1 of 22)	3301	NM_005418	6764		NM_005418	ENSG00000166444	DENND2B	HTS1|ST5|p126	DENN domain containing 2B	protein-coding
209291	chr7	75987071	75987650	+	0	NA	TTS (NM_001367562)	TTS (NM_001367562)	7235	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
111066	chr19	3146371	3146900	+	0	NA	intron (NR_110670, intron 2 of 3)	L2a|LINE|L2	8540	NR_110670	100996351		NR_110670	ENSG00000267551	GNA15-DT	-	GNA15 divergent transcript	ncRNA
160157	chr3	20185901	20187980	+	0	NA	promoter-TSS (NM_001012412)	promoter-TSS (NM_001012412)	-707	NR_131179	151648		NM_138484	ENSG00000129810	SGO1	CAID|NY-BR-85|SGO|SGOL1	shugoshin 1	protein-coding
59414	chr13	25292221	25292900	+	0	NA	Intergenic	Intergenic	-5072	NM_001385234	9107		NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
7396	chr1	32929701	32930100	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-28511	NM_001329723	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
125026	chr2	9582301	9582980	+	0	NA	Intergenic	AluSz|SINE|Alu	-26810	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
53695	chr12	68497071	68498050	+	0	NA	Intergenic	Intergenic	-46076	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
31039	chr10	88889671	88890400	+	0	NA	intron (NM_020799, intron 1 of 10)	L2b|LINE|L2	9790	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
176721	chr4	101287351	101288050	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	42714	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
35031	chr11	565851	566650	+	0	NA	non-coding (NR_038262, exon 2 of 2)	non-coding (NR_038262, exon 2 of 2)	1948	NR_029623	406992		NR_029623	ENSG00000199038	MIR210	MIRN210|mir-210	microRNA 210	ncRNA
14444	chr1	144402651	144403300	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	-9601	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
85426	chr16	50338601	50339440	+	0	NA	intron (NM_013263, intron 6 of 16)	intron (NM_013263, intron 6 of 16)	29968	NM_001173984	29117		NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4|SMARCI1	bromodomain containing 7	protein-coding
205188	chr7	7671471	7671830	+	0	NA	intron (NM_002947, intron 4 of 7)	intron (NM_002947, intron 4 of 7)	30898	NM_001302348	729852		NM_001302348	ENSG00000219545	UMAD1	RPA3-AS1|RPA3OS	UBAP1-MVB12-associated (UMA) domain containing 1	protein-coding
223265	chr8	143715801	143717380	+	0	NA	intron (NM_139021, intron 1 of 13)	CpG	241	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
131104	chr2	89839451	89839750	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-201693	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
55066	chr12	96489201	96490150	+	0	NA	promoter-TSS (NM_001306084)	promoter-TSS (NM_001306084)	98	NM_001367885	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
191855	chr6	15256521	15256980	+	0	NA	intron (NM_001267040, intron 1 of 17)	L2c|LINE|L2	7895	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
208103	chr7	56815021	56815280	+	0	NA	Intergenic	Intergenic	-2414	NR_130727	401357		NR_130727		LOC401357	-	uncharacterized LOC401357	ncRNA
88403	chr16	84647671	84649930	+	0	NA	intron (NM_024731, intron 1 of 4)	CpG	289	NM_024731	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
50531	chr12	47884951	47885750	+	0	NA	intron (NM_000376, intron 1 of 9)	intron (NM_000376, intron 1 of 9)	19644	NM_001374661	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
214833	chr7	151253751	151253850	+	0	NA	intron (NM_001003802, intron 2 of 13)	intron (NM_001003802, intron 2 of 13)	-5106	NM_001003801	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
75803	chr15	68888401	68888600	+	0	NA	Intergenic	L1MCc|LINE|L1	-42025	NM_145658	246777		NM_145658	ENSG00000258484	SPESP1	ESP|SP-ESP	sperm equatorial segment protein 1	protein-coding
78826	chr15	99712471	99712630	+	0	NA	exon (NM_001365204, exon 11 of 11)	exon (NM_001365204, exon 11 of 11)	20887	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
203828	chr7	1419551	1419850	+	0	NA	Intergenic	Intergenic	39770	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
54810	chr12	94649401	94651350	+	0	NA	exon (NM_020698, exon 1 of 4)	exon (NM_020698, exon 1 of 4)	182	NM_020698	57458		NM_020698	ENSG00000057704	TMCC3	-	transmembrane and coiled-coil domain family 3	protein-coding
53660	chr12	68372901	68373450	+	0	NA	Intergenic	Intergenic	-40761	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
57346	chr12	121770201	121770630	+	0	NA	intron (NM_001080825, intron 6 of 11)	MLT1B|LTR|ERVL-MaLR	23273	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
48527	chr12	10182871	10183030	+	0	NA	intron (NM_001384897, intron 2 of 3)	intron (NM_001384897, intron 2 of 3)	3918	NM_001384897	120939		NM_153022	ENSG00000165685	TMEM52B	C12orf59	transmembrane protein 52B	protein-coding
20392	chr1	198171501	198172280	+	0	NA	intron (NM_133494, intron 1 of 9)	L2c|LINE|L2	14892	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
192914	chr6	27668071	27668230	+	0	NA	Intergenic	Intergenic	-25885	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
155309	chr22	38194521	38194880	+	0	NA	Intergenic	Intergenic	-7232	NM_001161572	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
195723	chr6	39143451	39143750	+	0	NA	Intergenic	MamRep564|Unknown|Unknown	-28414	NM_001304793	55776		NM_018322	ENSG00000112167	SAYSD1	C6orf64	SAYSVFN motif domain containing 1	protein-coding
30566	chr10	79825771	79827700	+	0	NA	promoter-TSS (NR_120612)	promoter-TSS (NR_120612)	-4	NM_001355263	283008		NM_001355263	ENSG00000228570	NUTM2E	FAM22E	NUT family member 2E	protein-coding
28684	chr10	60730921	60731810	+	0	NA	intron (NM_001204403, intron 1 of 43)	intron (NM_001204403, intron 1 of 43)	2163	NM_001204403	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
216697	chr8	22176201	22176400	+	0	NA	exon (NM_001199, exon 3 of 16)	exon (NM_001199, exon 3 of 16)	10928	NR_033403	649		NM_001199	ENSG00000168487	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
19840	chr1	182882751	182883050	+	0	NA	intron (NM_001357, intron 24 of 27)	intron (NM_001357, intron 24 of 27)	-43309	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
12671	chr1	109404771	109405350	+	0	NA	intron (NM_001199772, intron 7 of 7)	L2c|LINE|L2	-7142	NM_002959	6272		NM_002959	ENSG00000134243	SORT1	Gp95|LDLCQ6|NT3|NTR3	sortilin 1	protein-coding
217135	chr8	25385021	25385550	+	0	NA	intron (NM_024940, intron 40 of 51)	L2a|LINE|L2	-23773	NR_159962	105379331		NR_159962		LOC105379331	-	uncharacterized LOC105379331	ncRNA
186198	chr5	134223921	134224500	+	0	NA	intron (NM_002715, intron 1 of 6)	intron (NM_002715, intron 1 of 6)	1344	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
34773	chr11	205371	205830	+	0	NA	exon (NM_016526, exon 3 of 3)	exon (NM_016526, exon 3 of 3)	1822	NM_001098787	51272		NM_016465	ENSG00000177951	BET1L	BET1L1|GOLIM3|GS15|HSPC197	Bet1 golgi vesicular membrane trafficking protein like	protein-coding
96617	chr17	40557621	40558400	+	0	NA	intron (NM_001301714, intron 1 of 1)	intron (NM_001301714, intron 1 of 1)	2384	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
191961	chr6	16141651	16142080	+	0	NA	TTS (NR_039782)	TTS (NR_039782)	309	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
189737	chr5	176555551	176556050	+	0	NA	intron (NM_017675, intron 1 of 31)	AluSx|SINE|Alu	6458	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
36348	chr11	3911501	3912400	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	55888	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
61574	chr13	71865651	71865750	+	0	NA	intron (NM_001366712, intron 1 of 11)	CpG	1492	NM_004392	1602		NM_004392	ENSG00000276644	DACH1	DACH	dachshund family transcription factor 1	protein-coding
91830	chr17	7189351	7189930	+	0	NA	TTS (NM_001321074)	TTS (NM_001321074)	-10076	NM_001197216	432		NM_001671	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
122178	chr19	48908551	48908850	+	0	NA	intron (NM_006184, intron 4 of 12)	intron (NM_006184, intron 4 of 12)	8388	NM_006184	4924		NM_006184	ENSG00000104805	NUCB1	CALNUC|NUC	nucleobindin 1	protein-coding
126625	chr2	28805221	28805780	+	0	NA	Intergenic	AluJb|SINE|Alu	-5334	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
195624	chr6	37783471	37784400	+	0	NA	Intergenic	Intergenic	-35792	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
90396	chr17	1294001	1294980	+	0	NA	intron (NM_172367, intron 1 of 2)	AluSx4|SINE|Alu	14828	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
133985	chr2	130824121	130825580	+	0	NA	Intergenic	Intergenic	-12064	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
41884	chr11	67247251	67247950	+	0	NA	intron (NM_012308, intron 15 of 20)	AluSz|SINE|Alu	7586	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
210210	chr7	99141971	99142800	+	0	NA	intron (NM_181349, intron 1 of 17)	intron (NM_181349, intron 1 of 17)	1723	NM_181349	57154		NM_020429	ENSG00000198742	SMURF1	-	SMAD specific E3 ubiquitin protein ligase 1	protein-coding
117707	chr19	29210421	29210680	+	0	NA	intron (NM_006003, intron 1 of 1)	L1PA3|LINE|L1	2601	NM_006003	7386		NM_006003	ENSG00000169021	UQCRFS1	MC3DN10|RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
84166	chr16	29803121	29803600	+	0	NA	intron (NM_001256269, intron 10 of 14)	L3|LINE|CR1	-2764	NM_001276275	4150		NM_002383	ENSG00000103495	MAZ	PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87	MYC associated zinc finger protein	protein-coding
200494	chr6	135496221	135496480	+	0	NA	intron (NM_001350503, intron 1 of 28)	AluSz|SINE|Alu	1390	NM_001134831	54806		NM_017651	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
163761	chr3	52371221	52371500	+	0	NA	intron (NM_015512, intron 41 of 77)	intron (NM_015512, intron 41 of 77)	38648	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
175574	chr4	75652321	75653130	+	0	NA	intron (NM_203504, intron 7 of 10)	MIRb|SINE|MIR	20434	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
186166	chr5	134189071	134189650	+	0	NA	Intergenic	Intergenic	-12327	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
148208	chr20	63566151	63566600	+	0	NA	intron (NM_033405, intron 2 of 13)	CpG	1379	NM_033405	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
46966	chr11	134740801	134741000	+	0	NA	intron (NR_147836, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	4955	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
145283	chr20	41012821	41013280	+	0	NA	intron (NR_145525, intron 2 of 2)	intron (NR_145525, intron 2 of 2)	-15772	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
167055	chr3	126911221	126912500	+	0	NA	intron (NM_032343, intron 5 of 7)	intron (NM_032343, intron 5 of 7)	-76734	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
27317	chr10	30501021	30501380	+	0	NA	Intergenic	Intergenic	66554	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
172251	chr4	1363921	1364730	+	0	NA	intron (NM_001317935, intron 7 of 13)	intron (NM_001317935, intron 7 of 13)	16769	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
92744	chr17	14330071	14330630	+	0	NA	intron (NM_006041, intron 1 of 1)	MIR3|SINE|MIR	26610	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
76404	chr15	74634971	74635830	+	0	NA	intron (NM_001351378, intron 8 of 8)	intron (NM_001351378, intron 8 of 8)	19564	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
39182	chr11	57455701	57456100	+	0	NA	Intergenic	Intergenic	-4628	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
235411	chrX	45754971	45755500	+	0	NA	Intergenic	AluY|SINE|Alu	-8111	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
3439	chr1	15883251	15883750	+	0	NA	intron (NM_015001, intron 3 of 14)	AluSz6|SINE|Alu	-35353	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
8848	chr1	43363521	43363900	+	0	NA	TTS (NR_106792)	TTS (NR_106792)	1005	NR_106792	102466723		NR_106792	ENSG00000283836	MIR6734	hsa-mir-6734	microRNA 6734	ncRNA
90851	chr17	2361871	2362100	+	0	NA	intron (NM_001346700, intron 3 of 22)	intron (NM_001346700, intron 3 of 22)	24484	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
62018	chr13	84176301	84176500	+	0	NA	intron (NR_046871, intron 1 of 6)	intron (NR_046871, intron 1 of 6)	35798	NR_046871	100874128		NR_046871		LINC00333	NCRNA00333	long intergenic non-protein coding RNA 333	ncRNA
121882	chr19	48333801	48334850	+	0	NA	intron (NM_001303538, intron 5 of 6)	intron (NM_001303538, intron 5 of 6)	8326	NM_001313905	2014		NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3 (MAM blood group)	protein-coding
193581	chr6	30681051	30681300	+	0	NA	intron (NM_133471, intron 1 of 2).5	L2a|LINE|L2	5470	NM_133471	170954		NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding
145912	chr20	45974051	45974750	+	0	NA	Intergenic	Intergenic	-2197	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
102536	chr17	75824921	75825350	+	0	NA	3' UTR (NM_001080419, exon 16 of 16)	3' UTR (NM_001080419, exon 16 of 16)	19269	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
7588	chr1	35186051	35186500	+	0	NA	intron (NM_005066, intron 9 of 9)	intron (NM_005066, intron 9 of 9)	6870	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
131565	chr2	96806251	96807750	+	0	NA	intron (NM_020184, intron 5 of 6)	intron (NM_020184, intron 5 of 6)	6657	NR_149141	100506036		NR_149141	ENSG00000273265	CNNM3-DT	-	CNNM3 divergent transcript	ncRNA
180452	chr5	10631801	10632600	+	0	NA	intron (NM_001164440, intron 2 of 3)	intron (NM_001164440, intron 2 of 3)	68130	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
56642	chr12	118404751	118405130	+	0	NA	intron (NM_022491, intron 10 of 11)	intron (NM_022491, intron 10 of 11)	28385	NM_022491	64426		NM_022491	ENSG00000111707	SUDS3	SAP45|SDS3	SDS3 homolog, SIN3A corepressor complex component	protein-coding
110234	chr19	1769521	1770180	+	0	NA	intron (NM_001080488, intron 1 of 1)	intron (NM_001080488, intron 1 of 1)	16344	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
113162	chr19	8366021	8366650	+	0	NA	intron (NM_001039667, intron 3 of 5)	intron (NM_001039667, intron 3 of 5)	2180	NM_139314	51129		NM_016109	ENSG00000167772	ANGPTL4	ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158	angiopoietin like 4	protein-coding
12520	chr1	108438671	108438830	+	0	NA	Intergenic	L1M3|LINE|L1	-11593	NM_001143987	653149		NM_001143987	ENSG00000186086	NBPF6	-	NBPF member 6	protein-coding
194248	chr6	32480651	32481030	+	0	NA	Intergenic	Intergenic	40953	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
83789	chr16	28754221	28754630	+	0	NA	intron (NM_001287250, intron 1 of 6)	MLT1I|LTR|ERVL-MaLR	1990	NM_001287250	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
90158	chr17	185751	186050	+	0	NA	intron (NR_104420, intron 1 of 1)	MER9a2|LTR|ERVK	1351	NR_104420	100506371		NR_104420		LINC02091	-	long intergenic non-protein coding RNA 2091	ncRNA
128812	chr2	62707371	62707530	+	0	NA	intron (NM_001142616, intron 2 of 22)	intron (NM_001142616, intron 2 of 22)	553	NM_001354217	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
102811	chr17	76441801	76442200	+	0	NA	intron (NM_022066, intron 1 of 17)	intron (NM_022066, intron 1 of 17)	11152	NM_022066	63893		NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin conjugating enzyme E2 O	protein-coding
11257	chr1	89028651	89029350	+	0	NA	Intergenic	L1PA6|LINE|L1	-6134	NM_001319180	2635		NM_018284	ENSG00000117226	GBP3	-	guanylate binding protein 3	protein-coding
163490	chr3	51009721	51009980	+	0	NA	intron (NM_004947, intron 5 of 52)	L1PA5|LINE|L1	334770	NR_039950	100616138		NR_039950	ENSG00000272543	MIR4787	mir-4787	microRNA 4787	ncRNA
159537	chr3	14467271	14467430	+	0	NA	intron (NR_103507, intron 7 of 13)	intron (NR_103507, intron 7 of 13)	64744	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
210037	chr7	94436021	94436300	+	0	NA	Intergenic	Intergenic	41265	NM_000089	1278		NM_000089	ENSG00000164692	COL1A2	EDSARTH2|EDSCV|OI4	collagen type I alpha 2 chain	protein-coding
60323	chr13	40661751	40661850	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	4841	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
238863	chrX	154515051	154515350	+	0	NA	intron (NM_021806, intron 1 of 8)	L2|LINE|L2	1032	NM_001171133	60343		NM_021806	ENSG00000071889	FAM3A	2.19|DLD|DXS560S|XAP-7	FAM3 metabolism regulating signaling molecule A	protein-coding
9456	chr1	50422821	50423150	+	0	NA	intron (NM_032110, intron 1 of 2)	CpG-1109	458	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
151018	chr21	44479471	44480030	+	0	NA	Intergenic	LTR13|LTR|ERVK	-5821	NR_155204	111216286		NR_155204		LINC02575	-	long intergenic non-protein coding RNA 2575	ncRNA
142622	chr20	5608351	5608900	+	0	NA	intron (NM_019593, intron 1 of 19)	intron (NM_019593, intron 1 of 19)	2381	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
111098	chr19	3195901	3196700	+	0	NA	intron (NM_020170, intron 4 of 14)	CpG	10370	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
101864	chr17	74211661	74211830	+	0	NA	intron (NR_026914, intron 1 of 1)	L2a|LINE|L2	1576	NR_026914	85001		NM_032915	ENSG00000246731	MGC16275	-	uncharacterized protein MGC16275	ncRNA
32690	chr10	103969871	103970430	+	0	NA	intron (NM_014720, intron 1 of 18)	MIR|SINE|MIR	3010	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
1755	chr1	6011251	6011630	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	-14893	NM_172130	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
119431	chr19	40353921	40354180	+	0	NA	intron (NM_012268, intron 1 of 12)	AluJb|SINE|Alu	5355	NM_012268	23646		NM_012268	ENSG00000105223	PLD3	AD19|HU-K4|HUK4|SCA46	phospholipase D family member 3	protein-coding
60475	chr13	41175771	41175930	+	0	NA	intron (NR_120423, intron 3 of 3)	MER11B|LTR|ERVK	18719	NM_032138	84078		NM_032138	ENSG00000120696	KBTBD7	-	kelch repeat and BTB domain containing 7	protein-coding
220357	chr8	99702471	99703100	+	0	NA	intron (NM_152564, intron 36 of 61)	intron (NM_152564, intron 36 of 61)	-165924	NR_030596	100126309		NR_030596	ENSG00000216069	MIR875	MIRN875|hsa-mir-875	microRNA 875	ncRNA
66021	chr14	58269821	58270300	+	0	NA	intron (NR_038123, intron 7 of 9)	AluSx1|SINE|Alu	-17973	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
107360	chr18	45937371	45937530	+	0	NA	intron (NM_020964, intron 10 of 43)	AluSx1|SINE|Alu	29879	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
51550	chr12	52526401	52527200	+	0	NA	Intergenic	Intergenic	-6406	NM_000424	3852		NM_000424	ENSG00000186081	KRT5	CK5|DDD|DDD1|EBS1|EBS2|EBS2A|EBS2B|EBS2C|EBS2D|EBS2E|EBS2F|K5|KRT5A	keratin 5	protein-coding
158088	chr22	49994521	49994850	+	0	NA	3' UTR (NM_001001694, exon 15 of 15)	3' UTR (NM_001001694, exon 15 of 15)	18080	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
224859	chr9	30075301	30075800	+	0	NA	Intergenic	Intergenic	332904	NR_046204	401497		NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
110380	chr19	1920021	1920480	+	0	NA	intron (NM_079834, intron 5 of 6)	intron (NM_079834, intron 5 of 6)	14851	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
58629	chr12	132500151	132500850	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	-4906	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
154405	chr22	35319771	35319930	+	0	NA	intron (NR_156428, intron 2 of 13)	intron (NR_156428, intron 2 of 13)	-15790	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
32665	chr10	103884721	103885150	+	0	NA	intron (NM_024928, intron 9 of 9)	intron (NM_024928, intron 9 of 9)	-29529	NM_014631	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
155003	chr22	37319421	37319680	+	0	NA	Intergenic	Intergenic	35289	NR_110515	100506271		NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA
52227	chr12	54391121	54392150	+	0	NA	promoter-TSS (NM_001130967)	promoter-TSS (NM_001130967)	-337	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
105599	chr18	656251	656350	+	0	NA	intron (NM_001012716, intron 1 of 1)	AluSg|SINE|Alu	-1353	NM_001354867	7298		NM_001071	ENSG00000176890	TYMS	DKCD|HST422|TMS|TS	thymidylate synthetase	protein-coding
127232	chr2	38655151	38655250	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-10914	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
235597	chrX	47623551	47624150	+	0	NA	TTS (NM_002621)	TTS (NM_002621)	-3993	NM_133499	6853		NM_006950	ENSG00000008056	SYN1	EPILX|EPILX1|MRX50|SYN1a|SYN1b|SYNI	synapsin I	protein-coding
131472	chr2	96427921	96428180	+	0	NA	Intergenic	MER83B-int|LTR|ERV1	77307	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
187401	chr5	141916051	141916350	+	0	NA	Intergenic	Intergenic	-7671	NM_001142603	9812		NM_014773	ENSG00000081791	DELE1	DELE|DELE1(L)|KIAA0141	DAP3 binding cell death enhancer 1	protein-coding
183220	chr5	76303871	76304500	+	0	NA	intron (NM_001297716, intron 12 of 12)	intron (NM_001297716, intron 12 of 12)	-99100	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
225938	chr9	40990001	40990630	+	0	NA	Intergenic	Intergenic	-1946	NR_156730	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
133492	chr2	119939451	119939750	+	0	NA	intron (NM_002830, intron 15 of 26)	AluJb|SINE|Alu	-73477	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
22583	chr1	222898121	222898380	+	0	NA	intron (NM_001377228, intron 1 of 7)	intron (NM_001377228, intron 1 of 7)	-30174	NM_001369594	84976		NM_032890	ENSG00000154309	DISP1	DISPA	dispatched RND transporter family member 1	protein-coding
145666	chr20	44969901	44972330	+	0	NA	intron (NR_147974, intron 1 of 3)	(AC)n|Simple_repeat|Simple_repeat	4603	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
210804	chr7	100869421	100869680	+	0	NA	intron (NM_003302, intron 4 of 8)	AluSp|SINE|Alu	1514	NR_106935	102466755		NR_106935	ENSG00000283821	MIR6875	hsa-mir-6875	microRNA 6875	ncRNA
171848	chr4	706971	708000	+	0	NA	intron (NM_001317836, intron 1 of 11)	intron (NM_001317836, intron 1 of 11)	1653	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
80354	chr16	2509221	2509480	+	0	NA	Intergenic	Intergenic	-4376	NM_001198569	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
220851	chr8	103184771	103184930	+	0	NA	intron (NM_001024372, intron 1 of 1)	intron (NM_001024372, intron 1 of 1)	-12710	NR_109954	100499183		NR_034092		BAALC-AS1	FZD6-DT|lncFZD6	BAALC antisense RNA 1	ncRNA
17194	chr1	156245351	156246400	+	0	NA	exon (NM_198406, exon 4 of 8)	exon (NM_198406, exon 4 of 8)	2181	NM_001272104	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
178756	chr4	153233801	153234000	+	0	NA	intron (NM_001375512, intron 2 of 12)	intron (NM_001375512, intron 2 of 12)	-23459	NM_001302694	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
179873	chr5	608151	608650	+	0	NA	intron (NR_103444, intron 2 of 2)	intron (NR_103444, intron 2 of 2)	3810	NR_103444	100996325		NR_103444		CEP72-DT	-	CEP72 divergent transcript	ncRNA
198477	chr6	106197221	106197850	+	0	NA	intron (NR_104402, intron 5 of 5)	MSTB1|LTR|ERVL-MaLR	98594	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
4652	chr1	22141821	22142500	+	0	NA	intron (NM_030761, intron 1 of 4)	intron (NM_030761, intron 1 of 4)	937	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
24922	chr10	1073921	1074450	+	0	NA	intron (NM_014023, intron 2 of 13)	intron (NM_014023, intron 2 of 13)	-17481	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
90026	chr16	89898071	89898680	+	0	NA	intron (NM_014972, intron 9 of 17)	intron (NM_014972, intron 9 of 17)	-20487	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
234530	chrX	19630471	19630830	+	0	NA	intron (NM_001353892, intron 9 of 17)	intron (NM_001353892, intron 9 of 17)	40349	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
24893	chr10	1015371	1015900	+	0	NA	intron (NM_012341, intron 15 of 16)	intron (NM_012341, intron 15 of 16)	-7002	NR_027709	55853		NM_018470	ENSG00000232656	IDI2-AS1	C10orf110|HT009|IDI2-AS	IDI2 antisense RNA 1	ncRNA
77212	chr15	80990951	80991050	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-1181	NR_126328	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
91728	chr17	6653021	6653430	+	0	NA	3' UTR (NM_001105520, exon 1 of 1)	3' UTR (NM_001105520, exon 1 of 1)	1463	NM_001105520	388327		NM_001105520	ENSG00000256806	C17orf100	-	chromosome 17 open reading frame 100	protein-coding
74733	chr15	63197301	63197800	+	0	NA	intron (NM_016530, intron 1 of 7)	AluSz|SINE|Alu	7944	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
213910	chr7	142507671	142508590	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	33603	NR_162121	113839523		NR_162121		MIR11400	-	microRNA 11400	ncRNA
37422	chr11	17296851	17297550	+	0	NA	intron (NM_001352667, intron 3 of 11)	intron (NM_001352667, intron 3 of 11)	20230	NM_001352672	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
113078	chr19	8259301	8259500	+	0	NA	intron (NM_024552, intron 10 of 11)	L2a|LINE|L2	48958	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
130285	chr2	84890171	84890680	+	0	NA	Intergenic	AluSx|SINE|Alu	-9341	NM_001307978	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
9861	chr1	54289421	54290100	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	53317	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
153140	chr22	23764821	23765300	+	0	NA	TTS (NM_001301339)	TTS (NM_001301339)	2070	NM_001376903	150248		NM_182520	ENSG00000169314	C22orf15	N27C7-3	chromosome 22 open reading frame 15	protein-coding
235742	chrX	48943001	48943200	+	0	NA	intron (NM_001136157, intron 2 of 8)	MIR3|SINE|MIR	14507	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
91183	chr17	3864701	3865300	+	0	NA	TTS (NM_172207)	TTS (NM_172207)	-18754	NM_001114118	55421		NM_018553	ENSG00000074356	NCBP3	C17orf85|ELG|HSA277841	nuclear cap binding subunit 3	protein-coding
161470	chr3	42264451	42264950	+	0	NA	promoter-TSS (NM_001174138)	promoter-TSS (NM_001174138)	-753	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
173869	chr4	24471821	24472150	+	0	NA	intron (NR_148983, intron 1 of 15)	CpG	920	NM_001330751	10891		NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
112886	chr19	7623171	7624130	+	0	NA	intron (NM_020196, intron 8 of 18)	intron (NM_020196, intron 8 of 18)	5895	NM_020196	56949		NM_020196	ENSG00000076924	XAB2	HCNP|HCRN|NTC90|SYF1	XPA binding protein 2	protein-coding
123709	chr19	55033371	55033530	+	0	NA	intron (NM_001083899, intron 1 of 7).8	CpG	4814	NM_016363	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
49588	chr12	27062671	27062930	+	0	NA	Intergenic	LTR16|LTR|ERVL	19778	NM_001080406	728858		NM_001080406	ENSG00000214700	C12orf71	-	chromosome 12 open reading frame 71	protein-coding
220965	chr8	114846751	114846850	+	0	NA	Intergenic	LTR16C|LTR|ERVL	821213	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
69171	chr14	92612901	92613730	+	0	NA	intron (NM_024832, intron 3 of 9)	intron (NM_024832, intron 3 of 9)	37081	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
227802	chr9	93159701	93160200	+	0	NA	Intergenic	Intergenic	-24980	NM_001282394	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
11777	chr1	92475101	92475380	+	0	NA	3' UTR (NM_001127215, exon 7 of 7)	3' UTR (NM_001127215, exon 7 of 7)	8714	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
146065	chr20	47492501	47492700	+	0	NA	Intergenic	L1M4|LINE|L1	-9287	NM_181659	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
20022	chr1	185306901	185307530	+	0	NA	intron (NM_006469, intron 6 of 14)	intron (NM_006469, intron 6 of 14)	10028	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
49312	chr12	21527401	21528100	+	0	NA	promoter-TSS (NR_135188)	promoter-TSS (NR_135188)	-175	NR_135188	80763		NM_030572	ENSG00000134548	SPX	C12orf39|SPX1	spexin hormone	protein-coding
232319	chr9	134847601	134848000	+	0	NA	intron (NR_103451, intron 1 of 1)	intron (NR_103451, intron 1 of 1)	1569	NR_039691	100616333		NR_039691	ENSG00000264744	MIR3689C	-	microRNA 3689c	ncRNA
102317	chr17	75371251	75371700	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	34203	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
94926	chr17	31974051	31974350	+	0	NA	intron (NM_015355, intron 6 of 15)	AluJb|SINE|Alu	-33183	NM_001321350	114659		NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
66856	chr14	64977701	64977900	+	0	NA	intron (NM_001202559, intron 3 of 13)	MLT1B|LTR|ERVL-MaLR	-5464	NM_001330182	376267		NM_198686	ENSG00000139998	RAB15	-	RAB15, member RAS oncogene family	protein-coding
69878	chr14	99318501	99318700	+	0	NA	Intergenic	L2b|LINE|L2	-46403	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
81506	chr16	8958071	8958980	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	-2145	NM_001321858	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
75071	chr15	64334521	64335250	+	0	NA	intron (NM_001329606, intron 1 of 11)	intron (NM_001329606, intron 1 of 11)	21288	NM_001329606	53944		NM_022048	ENSG00000169118	CSNK1G1	CK1gamma1	casein kinase 1 gamma 1	protein-coding
131	chr1	507851	508150	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12555	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
71079	chr14	104860451	104860750	+	0	NA	Intergenic	Intergenic	-4668	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
107736	chr18	50265821	50266980	+	0	NA	promoter-TSS (NM_145020)	promoter-TSS (NM_145020)	95	NM_145020	220136		NM_145020	ENSG00000172361	CFAP53	CCDC11|HTX6	cilia and flagella associated protein 53	protein-coding
27119	chr10	27747251	27747350	+	0	NA	intron (NR_121652, intron 1 of 1)	intron (NR_121652, intron 1 of 1)	-1481	NM_173576	283078		NM_173576	ENSG00000150051	MKX	C10orf48|IFRX|IRXL1	mohawk homeobox	protein-coding
159316	chr3	13013351	13013450	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-26299	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
119396	chr19	40231151	40231250	+	0	NA	3' UTR (NM_001330511, exon 12 of 12)	3' UTR (NM_001330511, exon 12 of 12)	-4511	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
143141	chr20	23926021	23926480	+	0	NA	Intergenic	Intergenic	-46502	NM_001900	1473		NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
82102	chr16	14529171	14529480	+	0	NA	intron (NM_002582, intron 21 of 23)	intron (NM_002582, intron 21 of 23)	100935	NM_001134477	5073		NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding
2250	chr1	8902601	8902800	+	0	NA	Intergenic	MER21A|LTR|ERVL	23865	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
121750	chr19	47749351	47749450	+	0	NA	intron (NM_015710, intron 2 of 12)	intron (NM_015710, intron 2 of 12)	3854	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
114203	chr19	11425671	11426150	+	0	NA	intron (NM_001302453, intron 7 of 12)	intron (NM_001302453, intron 7 of 12)	-6596	NM_001035223	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
60093	chr13	36420401	36420700	+	0	NA	Intergenic	LTR55|LTR|ERVL?	-11280	NM_001111046	8900		NM_003914	ENSG00000133101	CCNA1	CT146	cyclin A1	protein-coding
70297	chr14	101781021	101782980	+	0	NA	intron (NM_001352915, intron 2 of 14)	intron (NM_001352915, intron 2 of 14)	19630	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
26956	chr10	26593901	26594100	+	0	NA	non-coding (NR_026793, exon 4 of 4)	non-coding (NR_026793, exon 4 of 4)	4135	NR_026793	645528		NR_026793	ENSG00000290444	FAM238A	C10orf50|LINC00264|NCRNA00264|bA128B16.2	family with sequence similarity 238 member A	ncRNA
34253	chr10	131310471	131311000	+	0	NA	intron (NM_174937, intron 1 of 11)	intron (NM_174937, intron 1 of 11)	986	NM_174937	256536		NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1 like	protein-coding
86487	chr16	66999751	66999850	+	0	NA	promoter-TSS (NM_001190202)	promoter-TSS (NM_001190202)	-739	NM_001190202	283848		NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
66391	chr14	61495321	61495580	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	74744	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
29978	chr10	73737521	73737880	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6672	NM_004922	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
218717	chr8	58656551	58656850	+	0	NA	intron (NM_003580, intron 1 of 30)	AluY|SINE|Alu	2707	NM_001144772	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
78051	chr15	90086751	90087100	+	0	NA	intron (NM_002168, intron 7 of 10)	intron (NM_002168, intron 7 of 10)	-4718	NR_146321	109729181		NR_146321	ENSG00000259291	ZNF710-AS1	-	ZNF710 antisense RNA 1	ncRNA
102084	chr17	74962921	74963380	+	0	NA	intron (NM_030630, intron 3 of 18)	intron (NM_030630, intron 3 of 18)	-7539	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
222969	chr8	143202901	143203100	+	0	NA	Intergenic	Intergenic	-10218	NM_001301772	338328		NM_178172	ENSG00000277494	GPIHBP1	GPI-HBP1|HYPL1D	glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1	protein-coding
3092	chr1	12197621	12197950	+	0	NA	intron (NM_001066, intron 8 of 9)	intron (NM_001066, intron 8 of 9)	6072	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
104815	chr17	81806551	81807580	+	0	NA	intron (NM_000160, intron 1 of 13)	intron (NM_000160, intron 1 of 13)	2915	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
77724	chr15	85704111	85705180	+	0	NA	intron (NM_007200, intron 17 of 36)	intron (NM_007200, intron 17 of 36)	54080	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
73526	chr15	43801801	43802230	+	0	NA	non-coding (NR_037673, exon 6 of 6)	non-coding (NR_037673, exon 6 of 6)	1416	NM_016400	25764		NM_016400	ENSG00000242028	HYPK	C15orf63|HSPC136	huntingtin interacting protein K	protein-coding
43827	chr11	86804621	86804880	+	0	NA	intron (NR_120591, intron 1 of 4)	Tigger12c|DNA|TcMar-Tigger	4208	NM_001293179	11098		NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	serine protease 23	protein-coding
230315	chr9	127963171	127963550	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	-12646	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
112507	chr19	6472521	6472780	+	0	NA	intron (NM_024898, intron 15 of 22)	AluSg|SINE|Alu	8379	NM_174881	92359		NM_139161	ENSG00000130545	CRB3	-	crumbs cell polarity complex component 3	protein-coding
13004	chr1	111184701	111184900	+	0	NA	non-coding (NR_138483, exon 10 of 10)	non-coding (NR_138483, exon 10 of 10)	15846	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
173735	chr4	16025971	16026480	+	0	NA	intron (NM_001371408, intron 4 of 24)	intron (NM_001371408, intron 4 of 24)	49893	NM_001145849	8842		NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding
119368	chr19	40146651	40146950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-44626	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
195170	chr6	35916771	35917330	+	0	NA	intron (NR_034069, intron 2 of 15)	AluSx1|SINE|Alu	4048	NM_003137	6732		NM_003137	ENSG00000096063	SRPK1	SFRSK1	SRSF protein kinase 1	protein-coding
47809	chr12	6582251	6582650	+	0	NA	promoter-TSS (NR_003012)	promoter-TSS (NR_003012)	-841	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
87077	chr16	68417771	68419300	+	0	NA	intron (NM_018667, intron 1 of 8)	intron (NM_018667, intron 1 of 8)	29973	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
180920	chr5	34465221	34465580	+	0	NA	Intergenic	HERVK11D-int|LTR|ERVK	-190928	NM_001145522	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
125277	chr2	10453201	10453400	+	0	NA	intron (NR_110597, intron 3 of 4)	intron (NR_110597, intron 3 of 4)	3572	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
232013	chr9	133360321	133361450	+	0	NA	TTS (NM_001280789).2	TTS (NM_001280789).2	4335	NM_001278928	6835		NM_017503	ENSG00000148291	SURF2	SURF-2	surfeit 2	protein-coding
193306	chr6	30098771	30099000	+	0	NA	Intergenic	AluJb|SINE|Alu	-6355	NR_126470	104533120		NR_126470	ENSG00000231226	TRIM31-AS1	-	TRIM31 antisense RNA 1	ncRNA
211787	chr7	107628721	107628980	+	0	NA	Intergenic	Intergenic	-31978	NM_000441	5172		NM_000441	ENSG00000091137	SLC26A4	DFNB4|EVA|PDS|TDH2B	solute carrier family 26 member 4	protein-coding
174255	chr4	38005221	38005680	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	45052	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
80633	chr16	2988351	2988650	+	0	NA	promoter-TSS (NR_033861)	promoter-TSS (NR_033861)	-554	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
152401	chr22	20553901	20554750	+	0	NA	intron (NM_001293236, intron 4 of 15)	intron (NM_001293236, intron 4 of 15)	46278	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
166829	chr3	122875601	122875800	+	0	NA	intron (NM_032839, intron 8 of 8)	L5|LINE|RTE-X	-10813	NR_024618	100129550		NR_024618	ENSG00000273033	LINC02035	-	long intergenic non-protein coding RNA 2035	ncRNA
200006	chr6	128911051	128911150	+	0	NA	intron (NM_000426, intron 1 of 64)	L1PA3|LINE|L1	27962	NM_001079823	3908		NM_000426	ENSG00000196569	LAMA2	LAMM|MDC1A	laminin subunit alpha 2	protein-coding
9110	chr1	45324301	45325080	+	0	NA	Intergenic	Intergenic	-2205	NM_032756	84842		NM_032756	ENSG00000186603	HPDL	4-HPPD-L|GLOXD1|NEDSWMA|SPG83	4-hydroxyphenylpyruvate dioxygenase like	protein-coding
145698	chr20	45018051	45018350	+	0	NA	intron (NM_006282, intron 9 of 10)	intron (NM_006282, intron 9 of 10)	51688	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
64822	chr14	35048101	35048300	+	0	NA	intron (NM_173607, intron 1 of 4)	intron (NM_173607, intron 1 of 4)	1928	NM_173607	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
96952	chr17	42189571	42190200	+	0	NA	exon (NM_032484, exon 10 of 10)	exon (NM_032484, exon 10 of 10)	-4433	NM_001524	3060		NM_001524	ENSG00000161610	HCRT	NRCLP1|OX|PPOX	hypocretin neuropeptide precursor	protein-coding
211619	chr7	106012301	106012580	+	0	NA	intron (NM_001301161, intron 7 of 17)	L2a|LINE|L2	49176	NM_152750	222256		NM_152750	ENSG00000128536	CDHR3	CDH28	cadherin related family member 3	protein-coding
123631	chr19	54620971	54621330	+	0	NA	intron (NM_006669, intron 1 of 15).2	AluSq2|SINE|Alu	4220	NM_006669	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
122062	chr19	48696351	48697250	+	0	NA	intron (NM_000511, intron 1 of 1)	CpG	829	NM_001097638	2524		NM_000511	ENSG00000176920	FUT2	B12QTL1|SE|SEC2|Se2|sej	fucosyltransferase 2 (H blood group)	protein-coding
108061	chr18	59823671	59823850	+	0	NA	Intergenic	Intergenic	-76236	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
218560	chr8	54165871	54166530	+	0	NA	Intergenic	Intergenic	30959	NM_014175	29088		NM_014175	ENSG00000137547	MRPL15	HSPC145|L15mt|MRP-L15|MRP-L7|RPML7|uL15m	mitochondrial ribosomal protein L15	protein-coding
64993	chr14	38079551	38079650	+	0	NA	Intergenic	Intergenic	-128304	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
42973	chr11	73775071	73775300	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-12689	NR_134658	51642		NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48|mL48	mitochondrial ribosomal protein L48	protein-coding
237184	chrX	107713511	107715170	+	0	NA	3' UTR (NM_001318470, exon 4 of 4)	3' UTR (NM_001318470, exon 4 of 4)	2168	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
225074	chr9	33286771	33287430	+	0	NA	Intergenic	LTR41|LTR|ERVL	-3416	NM_002504	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
29741	chr10	72132171	72133000	+	0	NA	intron (NM_001369102, intron 9 of 11)	MER20|DNA|hAT-Charlie	-43553	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
204583	chr7	5291801	5292630	+	0	NA	intron (NM_001300847, intron 5 of 10)	AluJr|SINE|Alu	9272	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
3402	chr1	15743471	15743830	+	0	NA	intron (NM_001013641, intron 3 of 5)	intron (NM_001013641, intron 3 of 5)	1151	NM_001013641	388595		NM_001013641	ENSG00000162460	TMEM82	-	transmembrane protein 82	protein-coding
54458	chr12	91904671	91905230	+	0	NA	Intergenic	MIRb|SINE|MIR	236763	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
113934	chr19	10731501	10732430	+	0	NA	intron (NM_001005362, intron 1 of 19)	AluSq2|SINE|Alu	13561	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
218689	chr8	58532671	58532830	+	0	NA	Intergenic	L1M1|LINE|L1	-20174	NM_001348341	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
12869	chr1	110155671	110156130	+	0	NA	intron (NM_001010898, intron 1 of 11)	intron (NM_001010898, intron 1 of 11)	5406	NM_001010898	388662		NM_001010898	ENSG00000197106	SLC6A17	MRT48|NTT4	solute carrier family 6 member 17	protein-coding
107113	chr18	35063651	35065000	+	0	NA	intron (NR_046177, intron 1 of 6)	intron (NR_046177, intron 1 of 6)	22912	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
147388	chr20	58656971	58657330	+	0	NA	intron (NM_001134772, intron 1 of 7)	intron (NM_001134772, intron 1 of 7)	5867	NM_001204868	8675		NM_003763	ENSG00000124222	STX16	SYN-16|SYN16	syntaxin 16	protein-coding
134514	chr2	143430501	143430700	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	301181	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
85648	chr16	56119251	56119350	+	0	NA	intron (NR_027078, intron 2 of 4)	intron (NR_027078, intron 2 of 4)	71794	NR_027078	283856		NR_027078	ENSG00000246379	GNAO1-DT	-	GNAO1 divergent transcript	ncRNA
132289	chr2	105070171	105070530	+	0	NA	intron (NM_182640, intron 2 of 10)	intron (NM_182640, intron 2 of 10)	-31854	NR_110603	102724691		NR_110603	ENSG00000224509	MRPS9-AS2	-	MRPS9 antisense RNA 2	ncRNA
202287	chr6	157148951	157149050	+	0	NA	intron (NM_001371656, intron 10 of 20)	intron (NM_001371656, intron 10 of 20)	112573	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
142400	chr20	3849421	3849880	+	0	NA	intron (NM_001385663, intron 1 of 7)	L2a|LINE|L2	2816	NM_020746	57506		NM_020746	ENSG00000088888	MAVS	CARDIF|IPS-1|IPS1|VISA	mitochondrial antiviral signaling protein	protein-coding
99541	chr17	50363071	50363900	+	0	NA	Intergenic	Intergenic	9699	NM_016504	51264		NM_016504	ENSG00000108826	MRPL27	L27mt|bL27m	mitochondrial ribosomal protein L27	protein-coding
116140	chr19	17348351	17348850	+	0	NA	Intergenic	Intergenic	11047	NM_001128855	84705		NM_032620	ENSG00000130299	GTPBP3	COXPD23|GTPBG3|MSS1|MTGP1|THDF1	GTP binding protein 3, mitochondrial	protein-coding
229591	chr9	123376251	123376350	+	0	NA	intron (NM_173689, intron 12 of 12)	intron (NM_173689, intron 12 of 12)	7521	NR_104603	286204		NM_173689	ENSG00000148204	CRB2	FSGS9|VMCKD	crumbs cell polarity complex component 2	protein-coding
216646	chr8	22120451	22120980	+	0	NA	intron (NM_018411, intron 11 of 17)	intron (NM_018411, intron 11 of 17)	10295	NM_005144	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
4475	chr1	21435271	21435430	+	0	NA	Intergenic	Intergenic	-4787	NM_001377492	84224		NM_032264	ENSG00000142794	NBPF3	AE2	NBPF member 3	protein-coding
117750	chr19	29666701	29667180	+	0	NA	intron (NM_024310, intron 1 of 1)	intron (NM_024310, intron 1 of 1)	1479	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
189312	chr5	172143921	172144980	+	0	NA	intron (NM_005990, intron 2 of 18)	intron (NM_005990, intron 2 of 18)	43774	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
203565	chr7	900271	900950	+	0	NA	exon (NM_001284311, exon 5 of 9)	exon (NM_001284311, exon 5 of 9)	20279	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
168805	chr3	152203671	152203830	+	0	NA	intron (NR_136178, intron 1 of 2)	intron (NR_136178, intron 1 of 2)	1679	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
171361	chr3	196069671	196069900	+	0	NA	intron (NM_001313966, intron 4 of 16)	intron (NM_001313966, intron 4 of 16)	12305	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
227787	chr9	93130721	93130980	+	0	NA	intron (NM_004148, intron 1 of 3)	intron (NM_004148, intron 1 of 3)	3401	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
23933	chr1	235094821	235095080	+	0	NA	Intergenic	AluSx|SINE|Alu	-25132	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
61436	chr13	51844921	51845580	+	0	NA	promoter-TSS (NM_001351005)	promoter-TSS (NM_001351005)	-73	NM_001351006	283521		NM_178515	ENSG00000281106	TMEM272	LINC00282|NCRNA00282	transmembrane protein 272	protein-coding
41843	chr11	67121071	67121850	+	0	NA	intron (NM_012308, intron 2 of 20)	intron (NM_012308, intron 2 of 20)	2197	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
159425	chr3	13564771	13565080	+	0	NA	intron (NM_001004019, intron 1 of 17)	intron (NM_001004019, intron 1 of 17)	-3815	NM_001165035	2199		NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
226463	chr9	71735771	71735930	+	0	NA	intron (NM_013390, intron 5 of 23)	AluJr|SINE|Alu	32663	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
162684	chr3	48938751	48939150	+	0	NA	intron (NM_001349214, intron 3 of 15)	A-rich|Low_complexity|Low_complexity	-19565	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
16145	chr1	153673851	153674400	+	0	NA	Intergenic	AluSg|SINE|Alu	-3097	NM_001267809	3608		NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
73722	chr15	45166401	45168500	+	0	NA	3' UTR (NM_001301171, exon 6 of 6)	3' UTR (NM_001301171, exon 6 of 6)	13757	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
17002	chr1	156008351	156009350	+	0	NA	TTS (NM_003145)	TTS (NM_003145)	12101	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
136412	chr2	176160171	176160530	+	0	NA	intron (NM_006898, intron 1 of 3)	intron (NM_006898, intron 1 of 3)	3043	NM_006898	3232		NM_006898	ENSG00000128652	HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding
203472	chr7	513501	514100	+	0	NA	intron (NM_033023, intron 2 of 5)	intron (NM_033023, intron 2 of 5)	6044	NM_002607	5154		NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
82094	chr16	14405671	14406280	+	0	NA	Intergenic	Intergenic	-35709	NR_131191	105447648		NR_131191	ENSG00000260009	LINC02130	-	long intergenic non-protein coding RNA 2130	ncRNA
144938	chr20	37016721	37017430	+	0	NA	intron (NM_183404, intron 19 of 20)	intron (NM_183404, intron 19 of 20)	-65367	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
15768	chr1	151167821	151168550	+	0	NA	exon (NM_024041, exon 6 of 7)	exon (NM_024041, exon 6 of 7)	2041	NR_037937	79005		NM_024041	ENSG00000163156	SCNM1	OFD19	sodium channel modifier 1	protein-coding
124160	chr19	56106521	56107180	+	0	NA	intron (NM_001351682, intron 1 of 1)	intron (NM_001351682, intron 1 of 1)	14445	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
9270	chr1	46304971	46305130	+	0	NA	intron (NM_001297566, intron 1 of 2)	AluJb|SINE|Alu	1352	NM_006004	7388		NM_006004	ENSG00000173660	UQCRH	MC3DN11|QCR6|UQCR8	ubiquinol-cytochrome c reductase hinge protein	protein-coding
7644	chr1	35580271	35580630	+	0	NA	intron (NM_178548, intron 3 of 6)	MER5A|DNA|hAT-Charlie	7136	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
194267	chr6	32596201	32596400	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-6464	NM_001243965	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
227619	chr9	92767451	92767750	+	0	NA	Intergenic	MIRc|SINE|MIR	-2767	NM_001003800	23299		NM_015250	ENSG00000185963	BICD2	SMALED2|SMALED2A|SMALED2B|bA526D8.1	BICD cargo adaptor 2	protein-coding
14483	chr1	144531921	144532750	+	0	NA	Intergenic	Intergenic	19608	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
224666	chr9	21080921	21081180	+	0	NA	Intergenic	(AGGTG)n|Simple_repeat|Simple_repeat	-3108	NM_002176	3456		NM_002176	ENSG00000171855	IFNB1	IFB|IFF|IFN-beta|IFNB	interferon beta 1	protein-coding
172314	chr4	1614521	1615580	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	68941	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
40139	chr11	62843521	62843980	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1941	NM_001369451	54663		NM_018093	ENSG00000133316	WDR74	Nsa1	WD repeat domain 74	protein-coding
42062	chr11	67479771	67479930	+	0	NA	Intergenic	AluJo|SINE|Alu	-3176	NM_003977	9049		NM_003977	ENSG00000110711	AIP	ARA9|FKBP16|FKBP37|PITA1|SMTPHN|XAP-2|XAP2	aryl hydrocarbon receptor interacting protein	protein-coding
11531	chr1	90996521	90996780	+	0	NA	intron (NM_032186, intron 1 of 3)	AluJr|SINE|Alu	24858	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
214443	chr7	150045771	150046330	+	0	NA	TTS (NR_148939)	TTS (NR_148939)	1665	NM_001351027	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
15539	chr1	150534571	150534730	+	0	NA	Intergenic	AluSc5|SINE|Alu	-14758	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
162783	chr3	49090971	49091300	+	0	NA	intron (NM_001320584, intron 1 of 9)	AluY|SINE|Alu	2497	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
215045	chr7	152512351	152513050	+	0	NA	Intergenic	AluSq2|SINE|Alu	48576	NR_027387	100128822		NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
168661	chr3	150528401	150528700	+	0	NA	Intergenic	Intergenic	17946	NM_014445	27230		NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding
160100	chr3	19065171	19065330	+	0	NA	Intergenic	Intergenic	-83260	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
198499	chr6	106442651	106442950	+	0	NA	intron (NM_001371242, intron 1 of 21)	intron (NM_001371242, intron 1 of 21)	14448	NR_134603	105377924		NR_134603	ENSG00000282408	LOC105377924	-	uncharacterized LOC105377924	ncRNA
229417	chr9	121278671	121279050	+	0	NA	intron (NM_001353064, intron 2 of 19)	intron (NM_001353064, intron 2 of 19)	6670	NR_103560	57000		NM_020250	ENSG00000235865	GSN-AS1	C9orf31|MOST2	GSN antisense RNA 1	ncRNA
216990	chr8	23104471	23104650	+	0	NA	intron (NM_003841, intron 1 of 4)	L1ME4b|LINE|L1	1639	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
233864	chrX	1532551	1532650	+	0	NA	intron (NM_178129, intron 1 of 1)	L1PB1|LINE|L1	4585	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
48170	chr12	7969071	7969480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-33088	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
120011	chr19	41935901	41936100	+	0	NA	Intergenic	CpG	7180	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
156078	chr22	40046201	40046780	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	1673	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
62634	chr13	101144821	101145080	+	0	NA	intron (NM_052867, intron 15 of 43)	intron (NM_052867, intron 15 of 43)	-200586	NR_047015	100874161		NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA
192563	chr6	25441451	25442350	+	0	NA	intron (NM_001173977, intron 5 of 36)	intron (NM_001173977, intron 5 of 36)	162526	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
28643	chr10	59864451	59865350	+	0	NA	intron (NM_005436, intron 1 of 8)	intron (NM_005436, intron 1 of 8)	41656	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
181040	chr5	35908351	35908800	+	0	NA	intron (NM_144647, intron 4 of 4)	intron (NM_144647, intron 4 of 4)	30047	NM_001042625	133690		NM_144647	ENSG00000152611	CAPSL	-	calcyphosine like	protein-coding
144074	chr20	33688151	33689280	+	0	NA	Intergenic	MIR|SINE|MIR	-2330	NM_005225	1869		NM_005225	ENSG00000101412	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
224698	chr9	21367601	21367800	+	0	NA	exon (NM_006900, exon 1 of 1)	exon (NM_006900, exon 1 of 1)	357	NM_006900	3447		NM_006900	ENSG00000233816	IFNA13	-	interferon alpha 13	protein-coding
74498	chr15	60126321	60126580	+	0	NA	Intergenic	Intergenic	122139	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
131828	chr2	98652071	98653030	+	0	NA	intron (NM_001160154, intron 5 of 12)	AluY|SINE|Alu	10923	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
147626	chr20	62146321	62147250	+	0	NA	intron (NM_198935, intron 1 of 10)	AluSp|SINE|Alu	3016	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
92821	chr17	16037471	16038030	+	0	NA	intron (NM_001190440, intron 43 of 44)	HAL1b|LINE|L1	37926	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
13192	chr1	112623701	112623900	+	0	NA	intron (NM_006135, intron 1 of 9)	AluY|SINE|Alu	3968	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
178552	chr4	151105521	151106000	+	0	NA	Intergenic	AluSz6|SINE|Alu	1933	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
170206	chr3	184136671	184136830	+	0	NA	intron (NM_003907, intron 2 of 15)	intron (NM_003907, intron 2 of 15)	1392	NM_003907	8893		NM_003907	ENSG00000145191	EIF2B5	CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM|VWM5	eukaryotic translation initiation factor 2B subunit epsilon	protein-coding
119841	chr19	41380121	41380380	+	0	NA	intron (NM_001369864, intron 3 of 4)	MLT1G|LTR|ERVL-MaLR	2986	NM_001042595	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
45150	chr11	117201351	117201450	+	0	NA	intron (NR_045215, intron 1 of 7)	intron (NR_045215, intron 1 of 7)	514	NR_045215	100652768		NR_045215		LOC100652768	-	uncharacterized LOC100652768	ncRNA
10550	chr1	67052921	67054750	+	0	NA	exon (NM_015139, exon 1 of 12)	exon (NM_015139, exon 1 of 12)	313	NM_015139	23169		NM_015139	ENSG00000116704	SLC35D1	SHNKND|UGTREL7	solute carrier family 35 member D1	protein-coding
172087	chr4	1044901	1045500	+	0	NA	Intergenic	Intergenic	32736	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
122236	chr19	48999351	49000100	+	0	NA	intron (NR_135578, intron 2 of 14)	L2b|LINE|L2	5838	NR_135578	10856		NM_006666	ENSG00000183207	RUVBL2	CGI-46|ECP-51|ECP51|INO80J|REPTIN|RVB2|TAP54-beta|TIH2|TIP48|TIP49B	RuvB like AAA ATPase 2	protein-coding
156934	chr22	42310451	42310950	+	0	NA	Intergenic	Intergenic	-26773	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
203104	chr6	166456451	166456630	+	0	NA	intron (NM_021135, intron 12 of 20)	Tigger19a|DNA|TcMar-Tigger	8843	NR_046793	100874353		NR_046793	ENSG00000232082	RPS6KA2-IT1	-	RPS6KA2 intronic transcript 1	ncRNA
33424	chr10	118732271	118733230	+	0	NA	intron (NM_153810, intron 1 of 8)	LTR16C|LTR|ERVL	22220	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
220300	chr8	98157971	98158130	+	0	NA	exon (NM_001145860, exon 16 of 16)	exon (NM_001145860, exon 16 of 16)	40210	NM_015029	10940		NM_015029	ENSG00000104356	POP1	ANXD2	POP1 homolog, ribonuclease P/MRP subunit	protein-coding
73214	chr15	41572501	41572700	+	0	NA	intron (NM_006293, intron 15 of 18)	intron (NM_006293, intron 15 of 18)	12628	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
35945	chr11	2526721	2527450	+	0	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	65631	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
81348	chr16	4799271	4799450	+	0	NA	intron (NR_046480, intron 5 of 9)	MIR3|SINE|MIR	3273	NM_024589	79641		NM_024589	ENSG00000067836	ROGDI	KTZS|RAV2|ROGD1	rogdi atypical leucine zipper	protein-coding
92128	chr17	7619451	7619750	+	0	NA	intron (NM_001289114, intron 1 of 7)	AluSq2|SINE|Alu	-4703	NM_004860	9513		NM_004860	ENSG00000129245	FXR2	FMR1L2|FXR2P	FMR1 autosomal homolog 2	protein-coding
74105	chr15	52800271	52801030	+	0	NA	Intergenic	Intergenic	-10314	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
132853	chr2	110865201	110865480	+	0	NA	intron (NM_001371254, intron 10 of 18)	intron (NM_001371254, intron 10 of 18)	132767	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
19515	chr1	175317271	175317500	+	0	NA	3' UTR (NM_003285, exon 23 of 23)	3' UTR (NM_003285, exon 23 of 23)	-124398	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
235546	chrX	47241271	47241830	+	0	NA	exon (NM_001371072, exon 9 of 21)	exon (NM_001371072, exon 9 of 21)	8541	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
190131	chr5	178047821	178048280	+	0	NA	TTS (NR_159407)	TTS (NR_159407)	38853	NR_159407	653316		NM_001079527	ENSG00000204677	FAM153CP	FAM153C|NY-REN-7-like	protein FAM153C	pseudo
201985	chr6	152297801	152298480	+	0	NA	intron (NM_033071, intron 92 of 145)	MIRc|SINE|MIR	-82390	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
63833	chr14	21500151	21500730	+	0	NA	intron (NM_019852, intron 6 of 10)	intron (NM_019852, intron 6 of 10)	10900	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
211802	chr7	107879221	107879880	+	0	NA	Intergenic	Intergenic	-11557	NM_001289751	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
62353	chr13	99202721	99203000	+	0	NA	intron (NR_026644, intron 1 of 8)	L2b|LINE|L2	2006	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
1440	chr1	2631151	2631450	+	0	NA	intron (NM_033467, intron 1 of 23)	intron (NM_033467, intron 1 of 23)	1716	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
54545	chr12	92140651	92140980	+	0	NA	3' UTR (NM_001731, exon 2 of 2)	3' UTR (NM_001731, exon 2 of 2)	898	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
92783	chr17	15828751	15829150	+	0	NA	Intergenic	Intergenic	-11208	NR_110839	101928567		NR_110839		LINC02087	-	long intergenic non-protein coding RNA 2087	ncRNA
43446	chr11	77800351	77801050	+	0	NA	intron (NM_016578, intron 1 of 15)	AluJr|SINE|Alu	20134	NM_016578	51773		NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
96818	chr17	41935751	41936230	+	0	NA	intron (NM_031421, intron 3 of 11)	intron (NM_031421, intron 3 of 11)	5373	NR_110662	83538		NM_031421	ENSG00000204815	ODAD4	TTC25	outer dynein arm docking complex subunit 4	protein-coding
66699	chr14	64233101	64233300	+	0	NA	exon (NM_001271877, exon 6 of 6)	exon (NM_001271877, exon 6 of 6)	17246	NM_182910	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
205453	chr7	17144221	17145000	+	0	NA	Intergenic	Intergenic	-154042	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
86039	chr16	57548401	57548800	+	0	NA	intron (NM_153837, intron 1 of 11)	L1MD2|LINE|L1	5957	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
204055	chr7	1969851	1970150	+	0	NA	intron (NM_001304524, intron 13 of 16)	intron (NM_001304524, intron 13 of 16)	-29429	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
208915	chr7	74058571	74058930	+	0	NA	intron (NM_000501, intron 22 of 32)	intron (NM_000501, intron 22 of 32)	-25054	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
230426	chr9	128146151	128146450	+	0	NA	Intergenic	Intergenic	-3153	NM_005564	3934		NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL|p25	lipocalin 2	protein-coding
58091	chr12	124636151	124636630	+	0	NA	Intergenic	LTR8|LTR|ERV1	-68778	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
177189	chr4	108171101	108172200	+	0	NA	promoter-TSS (NR_029373)	promoter-TSS (NR_029373)	-470	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
81702	chr16	11243501	11243700	+	0	NA	Intergenic	Intergenic	12582	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
12177	chr1	100362801	100363300	+	0	NA	intron (NM_001319210, intron 2 of 16)	LTR9|LTR|ERV1	10544	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
89953	chr16	89762571	89762930	+	0	NA	intron (NM_001286167, intron 28 of 42)	AluJo|SINE|Alu	41213	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
107532	chr18	48454371	48454930	+	0	NA	Intergenic	Intergenic	-42065	NM_001371287	201501		NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
125299	chr2	10547471	10547830	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	97922	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
96111	chr17	39635551	39636030	+	0	NA	intron (NM_032192, intron 6 of 6)	intron (NM_032192, intron 6 of 6)	-1290	NM_001165937	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
50257	chr12	46259701	46260350	+	0	NA	intron (NM_001278387, intron 1 of 17)	MIR|SINE|MIR	6491	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
21528	chr1	205811251	205811350	+	0	NA	intron (NM_173854, intron 1 of 10)	intron (NM_173854, intron 1 of 10)	1898	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
140758	chr2	234496001	234497830	+	0	NA	5' UTR (NM_005737, exon 1 of 1)	5' UTR (NM_005737, exon 1 of 1)	134	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
161335	chr3	40160371	40160550	+	0	NA	intron (NM_015460, intron 4 of 16)	L1PA3|LINE|L1	60449	NM_001284426	25924		NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
213789	chr7	140881151	140881530	+	0	NA	intron (NM_001374244, intron 1 of 18)	Tigger1|DNA|TcMar-Tigger	42928	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
82324	chr16	15728971	15729130	+	0	NA	intron (NM_022844, intron 27 of 41).2	intron (NM_022844, intron 27 of 41).2	78805	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
91144	chr17	3753251	3753850	+	0	NA	intron (NM_002208, intron 13 of 30)	intron (NM_002208, intron 13 of 30)	29647	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
12379	chr1	101260671	101261580	+	0	NA	Intergenic	Intergenic	24106	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
222806	chr8	142451901	142452300	+	0	NA	intron (NM_001702, intron 1 of 30)	CpG	2451	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
46282	chr11	124862271	124862800	+	0	NA	Intergenic	Intergenic	-2897	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
59889	chr13	30734251	30734550	+	0	NA	intron (NM_001204406, intron 1 of 5)	intron (NM_001204406, intron 1 of 5)	-1143	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
117882	chr19	32673651	32673750	+	0	NA	intron (NM_032139, intron 1 of 28)	intron (NM_032139, intron 1 of 28)	1480	NM_032139	84079		NM_032139	ENSG00000105186	ANKRD27	PP12899|VARP	ankyrin repeat domain 27	protein-coding
183118	chr5	74687171	74687330	+	0	NA	intron (NM_000521, intron 1 of 13)	intron (NM_000521, intron 1 of 13)	2017	NM_000521	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
100862	chr17	64261751	64264150	+	0	NA	intron (NM_001288732, intron 1 of 11)	CpG	310	NM_001288732	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
107905	chr18	57428671	57428830	+	0	NA	Intergenic	CpG	-6624	NM_004852	9480		NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
60116	chr13	38415301	38415500	+	0	NA	Intergenic	Intergenic	65549	NM_016617	51569		NM_016617	ENSG00000120686	UFM1	BM-002|C13orf20|HLD14	ubiquitin fold modifier 1	protein-coding
239455	chrY	56717221	56717500	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-236895	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
2476	chr1	9663951	9664550	+	0	NA	intron (NM_005026, intron 1 of 23)	AluSx|SINE|Alu	-9664	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
96450	chr17	40215471	40216480	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3329	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
50777	chr12	49036621	49036880	+	0	NA	intron (NM_003482, intron 35 of 54)	AluSq2|SINE|Alu	-17974	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
128731	chr2	61882971	61883330	+	0	NA	intron (NM_001256721, intron 2 of 12)	AluSg|SINE|Alu	-5241	NM_001371765	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
102732	chr17	76226901	76227100	+	0	NA	intron (NM_052916, intron 1 of 18)	CpG	13493	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
92056	chr17	7505451	7505550	+	0	NA	intron (NM_000937, intron 19 of 29)	L1MB7|LINE|L1	21134	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
40906	chr11	65169271	65169430	+	0	NA	promoter-TSS (NM_001008778)	promoter-TSS (NM_001008778)	-804	NM_001008778	387778		NM_001008778	ENSG00000204710	SPDYC	RINGOC|Ringo2|SPDYE4	speedy/RINGO cell cycle regulator family member C	protein-coding
194139	chr6	31978901	31979380	+	0	NA	intron (NM_032454, intron 4 of 7)	intron (NM_032454, intron 4 of 7)	-2917	NM_001352000	110384692		NM_001352000		LOC110384692	-	complement C4A (Rodgers blood group)-like	protein-coding
107655	chr18	48992851	48992950	+	0	NA	Intergenic	Intergenic	-30803	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
130474	chr2	85550071	85551230	+	0	NA	exon (NM_001142269, exon 13 of 14)	exon (NM_001142269, exon 13 of 14)	10843	NM_001311312	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
234362	chrX	15737521	15739030	+	0	NA	promoter-TSS (NM_007220)	promoter-TSS (NM_007220)	5	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
69924	chr14	99523171	99524100	+	0	NA	intron (NM_001144995, intron 2 of 5)	intron (NM_001144995, intron 2 of 5)	42226	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
70464	chr14	102065371	102065730	+	0	NA	Intergenic	Intergenic	21494	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
43628	chr11	83216451	83216550	+	0	NA	intron (NM_182603, intron 5 of 9)	AluYe5|SINE|Alu	22788	NM_001300973	338699		NM_182603	ENSG00000137494	ANKRD42	PPP1R79|SARP	ankyrin repeat domain 42	protein-coding
124313	chr19	58059071	58059780	+	0	NA	intron (NM_001164527, intron 1 of 2)	CpG	143	NM_001289401	7694		NM_003436	ENSG00000176293	ZNF135	ZNF61|ZNF78L1|pHZ-17|pT3	zinc finger protein 135	protein-coding
22544	chr1	222470251	222470550	+	0	NA	Intergenic	(CCTGA)n|Simple_repeat|Simple_repeat	77704	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
109758	chr19	1118771	1119250	+	0	NA	intron (NM_001100122, intron 11 of 28).2	CpG	13211	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
68533	chr14	89187171	89187330	+	0	NA	intron (NM_005197, intron 4 of 5)	intron (NM_005197, intron 4 of 5)	229983	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
149862	chr21	35237351	35237650	+	0	NA	Intergenic	Intergenic	-188198	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
178635	chr4	152258621	152258880	+	0	NA	Intergenic	Intergenic	-78924	NR_104273	102191832		NR_104273	ENSG00000270751	FBXW7-AS1	DEAR|DEspR	FBXW7 antisense RNA 1	ncRNA
139271	chr2	219476171	219477230	+	0	NA	intron (NM_005876, intron 18 of 40)	intron (NM_005876, intron 18 of 40)	15888	NM_001173476	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
171438	chr3	196279251	196279950	+	0	NA	intron (NM_001312673, intron 1 of 8)	intron (NM_001312673, intron 1 of 8)	8126	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
119347	chr19	39978251	39978350	+	0	NA	intron (NM_006503, intron 6 of 10)	intron (NM_006503, intron 6 of 10)	7135	NM_006503	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
119223	chr19	39461321	39461580	+	0	NA	intron (NM_001111020, intron 10 of 29)	AluJr|SINE|Alu	-6772	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
127098	chr2	37623401	37625000	+	0	NA	Intergenic	Intergenic	47442	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
120884	chr19	45580851	45580950	+	0	NA	intron (NM_025136, intron 1 of 1)	AluSx3|SINE|Alu	3902	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
78447	chr15	92832501	92833700	+	0	NA	Intergenic	Intergenic	37616	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
118933	chr19	38744971	38745580	+	0	NA	promoter-TSS (NM_144691)	promoter-TSS (NM_144691)	-801	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
179091	chr4	168476971	168477330	+	0	NA	intron (NM_001378070, intron 1 of 5)	AluY|SINE|Alu	3342	NM_001345927	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
44006	chr11	94740471	94740630	+	0	NA	promoter-TSS (NR_135093)	promoter-TSS (NR_135093)	-195	NR_135093	105369438		NR_135093	ENSG00000255929	PIWIL4-AS1	-	PIWIL4 antisense RNA 1	ncRNA
111232	chr19	3512171	3512330	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	5939	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
181454	chr5	41868101	41868430	+	0	NA	intron (NR_157114, intron 1 of 15)	L2c|LINE|L2	-1765	NR_046635	100874002		NR_046635	ENSG00000248668	OXCT1-AS1	SARRAH	OXCT1 antisense RNA 1	ncRNA
85847	chr16	57015971	57017750	+	0	NA	intron (NR_169520, intron 1 of 47)	intron (NR_169520, intron 1 of 47)	27303	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
18268	chr1	161097201	161099450	+	0	NA	promoter-TSS (NR_033386)	promoter-TSS (NR_033386)	-36	NR_033386	126823		NM_152366	ENSG00000162755	KLHDC9	KARCA1	kelch domain containing 9	protein-coding
19134	chr1	171538851	171539150	+	0	NA	intron (NM_015172, intron 15 of 33)	AluJb|SINE|Alu	53470	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
1304	chr1	2389751	2390150	+	0	NA	exon (NM_024848, exon 2 of 14)	exon (NM_024848, exon 2 of 14)	1604	NR_125361	79906		NM_024848	ENSG00000116151	MORN1	-	MORN repeat containing 1	protein-coding
22052	chr1	211228771	211229930	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-29927	NR_146434	55758		NM_018254	ENSG00000117625	RCOR3	-	REST corepressor 3	protein-coding
216679	chr8	22155051	22155150	+	0	NA	intron (NM_139278, intron 2 of 7)	intron (NM_139278, intron 2 of 7)	1706	NM_139278	203190		NM_139278	ENSG00000168481	LGI3	IDDMDS|LGIL4	leucine rich repeat LGI family member 3	protein-coding
105320	chr17	82580701	82580900	+	0	NA	intron (NM_004514, intron 4 of 8)	intron (NM_004514, intron 4 of 8)	61068	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
73655	chr15	44713501	44714290	+	0	NA	intron (NM_004048, intron 1 of 3)	intron (NM_004048, intron 1 of 3)	2378	NM_004048	567		NM_004048	ENSG00000166710	B2M	IMD43	beta-2-microglobulin	protein-coding
45411	chr11	118352871	118354250	+	0	NA	3' UTR (NM_000073, exon 7 of 7)	3' UTR (NM_000073, exon 7 of 7)	-6040	NM_001204077	9354		NM_004788	ENSG00000110344	UBE4A	E4|NEDHMS|UBOX2|UFD2	ubiquitination factor E4A	protein-coding
213617	chr7	139483521	139484250	+	0	NA	promoter-TSS (NM_198508)	promoter-TSS (NM_198508)	-212	NM_198508	346689		NM_198508	ENSG00000188883	KLRG2	CLEC15B	killer cell lectin like receptor G2	protein-coding
31487	chr10	96610651	96611300	+	0	NA	intron (NM_152309, intron 13 of 16)	intron (NM_152309, intron 13 of 16)	-23963	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
41419	chr11	66054051	66054350	+	0	NA	TTS (NR_145738)	TTS (NR_145738)	1056	NR_145738	109616986		NR_145738		SNORD13F	-	small nucleolar RNA, C/D box 13F	snoRNA
137151	chr2	191069551	191069930	+	0	NA	exon (NM_001243835, exon 6 of 24)	exon (NM_001243835, exon 6 of 24)	48214	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
77148	chr15	79922721	79924200	+	0	NA	promoter-TSS (NM_001199760)	promoter-TSS (NM_001199760)	292	NR_037652	400410		NM_001100879	ENSG00000180953	ST20	HCCS-1	suppressor of tumorigenicity 20	ncRNA
210128	chr7	98205271	98205430	+	0	NA	intron (NM_014916, intron 13 of 13)	CpG	-6089	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
127066	chr2	37390101	37391080	+	0	NA	Intergenic	Intergenic	45960	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
136741	chr2	181280471	181280630	+	0	NA	intron (NR_130784, intron 3 of 4)	L2|LINE|L2	25102	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
3295	chr1	15341721	15343030	+	0	NA	intron (NM_052929, intron 15 of 30)	MER5A1|DNA|hAT-Charlie	1508	NR_148918	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
142457	chr20	4017501	4017900	+	0	NA	Intergenic	Intergenic	-2142	NM_001134337	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
25160	chr10	5284371	5284600	+	0	NA	Intergenic	Intergenic	-13249	NR_149060	110806285		NR_149060	ENSG00000224034	LINC02561	-	long intergenic non-protein coding RNA 2561	ncRNA
71590	chr14	106512721	106512980	+	0	NA	Intergenic	Intergenic	30411	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
69368	chr14	94011571	94012700	+	0	NA	TTS (NR_024183).2	TTS (NR_024183).2	-14205	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
36506	chr11	6410701	6410900	+	0	NA	exon (NM_145689, exon 2 of 14)	exon (NM_145689, exon 2 of 14)	-5137	NM_001257320	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
25408	chr10	6542771	6544580	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	36601	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
128959	chr2	64636451	64637680	+	0	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	16848	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
124019	chr19	55478101	55478600	+	0	NA	intron (NM_033113, intron 1 of 2)	L2a|LINE|L2	1733	NM_033113	89887		NM_033113	ENSG00000197483	ZNF628	ZEC|Zfp628	zinc finger protein 628	protein-coding
77841	chr15	88650521	88650830	+	0	NA	5' UTR (NM_001303236, exon 3 of 4)	5' UTR (NM_001303236, exon 3 of 4)	11659	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
58321	chr12	131129001	131129540	+	0	NA	intron (NM_001330497, intron 21 of 25)	intron (NM_001330497, intron 21 of 25)	-35741	NR_026670	116437		NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
197763	chr6	87322051	87323030	+	0	NA	promoter-TSS (NM_020425)	promoter-TSS (NM_020425)	-48	NM_020425	57150		NM_020425	ENSG00000111850	SMIM8	C6orf162|dJ102H19.2	small integral membrane protein 8	protein-coding
30762	chr10	84325401	84325600	+	0	NA	Intergenic	AluJr|SINE|Alu	-3089	NM_001284241	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
40337	chr11	63921201	63922000	+	0	NA	Intergenic	MIRb|SINE|MIR	-4436	NM_173587	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
82968	chr16	21934771	21935450	+	0	NA	Intergenic	Intergenic	-18251	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
71565	chr14	106389021	106389430	+	0	NA	Intergenic	Intergenic	-93214	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
25195	chr10	5664571	5664930	+	0	NA	intron (NR_024581, intron 1 of 4)	AluSx1|SINE|Alu	1845	NR_024581	79754		NM_024701	ENSG00000196372	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
145859	chr20	45909371	45910030	+	0	NA	intron (NM_001242921, intron 2 of 13)	intron (NM_001242921, intron 2 of 13)	1294	NM_001242921	5360		NM_006227	ENSG00000100979	PLTP	BPIFE|HDLCQ9	phospholipid transfer protein	protein-coding
201492	chr6	149000271	149000430	+	0	NA	intron (NM_005715, intron 5 of 7)	L1MEi|LINE|L1	32311	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
196487	chr6	43626971	43627750	+	0	NA	promoter-TSS (NM_001286216)	promoter-TSS (NM_001286216)	-7	NM_001286216	54676		NM_019096	ENSG00000172432	GTPBP2	JABELS	GTP binding protein 2	protein-coding
105577	chr18	111321	112530	+	0	NA	promoter-TSS (NR_160777)	promoter-TSS (NR_160777)	-173	NR_160777	727758		NR_033770	ENSG00000290877	ROCK1P1	ROCK1P	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
134963	chr2	152036871	152037130	+	0	NA	intron (NM_000726, intron 2 of 13)	intron (NM_000726, intron 2 of 13)	61763	NM_001005746	785		NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
167583	chr3	129555401	129555600	+	0	NA	3' UTR (NM_015103, exon 36 of 36)	3' UTR (NM_015103, exon 36 of 36)	7115	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
128609	chr2	61135571	61135800	+	0	NA	intron (NM_001330435, intron 21 of 21)	intron (NM_001330435, intron 21 of 21)	9290	NR_036496	339803		NR_036496	ENSG00000212978	C2orf74-DT	-	C2orf74 divergent transcript	ncRNA
235579	chrX	47545521	47545980	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-15350	NM_001256196	369		NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
79686	chr16	1259851	1260630	+	0	NA	Intergenic	CpG	4171	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
4427	chr1	21271501	21271700	+	0	NA	intron (NM_001397, intron 4 of 18)	intron (NM_001397, intron 4 of 18)	8015	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
6229	chr1	27520201	27520400	+	0	NA	Intergenic	L2b|LINE|L2	-30133	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
224912	chr9	32555301	32555500	+	0	NA	intron (NM_182739, intron 2 of 2)	MLT1J2-int|LTR|ERVL-MaLR	-2772	NM_001195622	10210		NM_005802	ENSG00000197579	TOPORS	LUN|P53BP3|RP31|TP53BPL	TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase	protein-coding
112550	chr19	6540951	6541730	+	0	NA	Intergenic	AluJb|SINE|Alu	10314	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
203	chr1	699351	699730	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-12886	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
202051	chr6	154155801	154156700	+	0	NA	3' UTR (NM_001130699, exon 13 of 13)	3' UTR (NM_001130699, exon 13 of 13)	66488	NM_001285527	4988		NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor mu 1	protein-coding
228052	chr9	96025201	96025700	+	0	NA	intron (NM_001375291, intron 18 of 18)	intron (NM_001375291, intron 18 of 18)	-3639	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
150456	chr21	42498801	42499200	+	0	NA	promoter-TSS (NM_018964)	promoter-TSS (NM_018964)	-622	NM_018964	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
63180	chr13	113729871	113730350	+	0	NA	intron (NM_002929, intron 4 of 6)	CpG	20979	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
218332	chr8	42804851	42805590	+	0	NA	Intergenic	Intergenic	-36434	NM_001199279	8973		NM_004198	ENSG00000147434	CHRNA6	CHNRA6	cholinergic receptor nicotinic alpha 6 subunit	protein-coding
173906	chr4	25180521	25180950	+	0	NA	intron (NR_037934, intron 1 of 1)	intron (NR_037934, intron 1 of 1)	20063	NR_037934	285540		NR_037934		SEPSECS-AS1	-	SEPSECS antisense RNA 1 (head to head)	ncRNA
130102	chr2	74522301	74522700	+	0	NA	intron (NM_133637, intron 8 of 11)	L2c|LINE|L2	3731	NM_133637	165545		NM_133637	ENSG00000144045	DQX1	-	DEAQ-box RNA dependent ATPase 1	protein-coding
29824	chr10	72319011	72321550	+	0	NA	Intergenic	Intergenic	34639	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
221135	chr8	118524921	118525180	+	0	NA	intron (NM_207506, intron 2 of 3)	L2a|LINE|L2	-95951	NR_038210	552860		NR_038210		SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA
224283	chr9	6419771	6419930	+	0	NA	intron (NR_046386, intron 1 of 16)	AluJb|SINE|Alu	6651	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
57508	chr12	122106301	122106600	+	0	NA	intron (NM_014938, intron 1 of 16)	L2b|LINE|L2	27694	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
37920	chr11	34161601	34162400	+	0	NA	intron (NM_145804, intron 10 of 16)	MIRb|SINE|MIR	56371	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
121707	chr19	47597551	47597850	+	0	NA	Intergenic	AluY|SINE|Alu	-10496	NM_015711	29998		NM_015711	ENSG00000063169	BICRA	CSS12|GLTSCR1|SMARCK1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding
69677	chr14	98140071	98140230	+	0	NA	Intergenic	Intergenic	-162026	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
156162	chr22	40209571	40210330	+	0	NA	intron (NM_015088, intron 1 of 20)	AluSg7|SINE|Alu	32025	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
222587	chr8	140831101	140831330	+	0	NA	intron (NM_001352742, intron 4 of 31)	intron (NM_001352742, intron 4 of 31)	-98562	NR_029892	442893		NR_029892	ENSG00000254324	MIR151A	MIR151|MIRN151|hsa-mir-151|hsa-mir-151a	microRNA 151a	ncRNA
173656	chr4	13548851	13549280	+	0	NA	Intergenic	Intergenic	-1241	NR_015450	285548		NR_015450		LINC01096	-	long intergenic non-protein coding RNA 1096	ncRNA
171867	chr4	757951	758750	+	0	NA	intron (NM_001317836, intron 9 of 11)	CpG	23498	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
24420	chr1	243486171	243486530	+	0	NA	intron (NM_001350251, intron 19 of 20).2	intron (NM_001350251, intron 19 of 20).2	140174	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
180627	chr5	16644051	16644550	+	0	NA	Intergenic	LTR16D|LTR|ERVL	-27242	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
166410	chr3	113695101	113697950	+	0	NA	non-coding (NR_111981, exon 1 of 7)	non-coding (NR_111981, exon 1 of 7)	117	NR_111981	205717		NM_001009899	ENSG00000176542	USF3	KIAA2018	upstream transcription factor family member 3	protein-coding
197664	chr6	85456701	85457100	+	0	NA	intron (NM_002526, intron 1 of 8)	MIRb|SINE|MIR	6817	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
222652	chr8	141170301	141170700	+	0	NA	intron (NM_014957, intron 13 of 22)	intron (NM_014957, intron 13 of 22)	41911	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
208651	chr7	73035371	73035600	+	0	NA	Intergenic	Intergenic	-5719	NM_001351349	100996746		NM_001351349	ENSG00000275976	SPDYE11	-	speedy/RINGO cell cycle regulator family member E11	protein-coding
180771	chr5	32165221	32165550	+	0	NA	intron (NM_022130, intron 1 of 3)	AluSx1|SINE|Alu	8934	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
11611	chr1	91701801	91702200	+	0	NA	intron (NR_036634, intron 15 of 17)	MER20|DNA|hAT-Charlie	184151	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
15619	chr1	150620851	150620950	+	0	NA	TTS (NM_207045)	TTS (NM_207045)	8233	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
140243	chr2	231907301	231907700	+	0	NA	Intergenic	Intergenic	-15202	NR_031717	100302126		NR_031717	ENSG00000222246	MIR1471	MIRN1471|hsa-mir-1471	microRNA 1471	ncRNA
56658	chr12	119828221	119828480	+	0	NA	intron (NM_007174, intron 7 of 46)	intron (NM_007174, intron 7 of 46)	48970	NM_001206999	11113		NM_007174	ENSG00000122966	CIT	CITK|CRIK|MCPH17|STK21	citron rho-interacting serine/threonine kinase	protein-coding
89459	chr16	89031901	89032530	+	0	NA	Intergenic	L1MEc|LINE|L1	-55008	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
227735	chr9	93061951	93062700	+	0	NA	intron (NM_001287007, intron 1 of 2)	intron (NM_001287007, intron 1 of 2)	3624	NM_001287007	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
85725	chr16	56639251	56640250	+	0	NA	intron (NM_005946, intron 2 of 2)	intron (NM_005946, intron 2 of 2)	1084	NM_005946	4489		NM_005946	ENSG00000205362	MT1A	MT-1A|MT-IA|MT1|MT1S|MTC	metallothionein 1A	protein-coding
140327	chr2	232528951	232529650	+	0	NA	intron (NM_001256657, intron 5 of 10)	intron (NM_001256657, intron 5 of 10)	3140	NM_000751	1144		NM_000751	ENSG00000135902	CHRND	ACHRD|CMS2A|CMS3A|CMS3B|CMS3C|FCCMS|SCCMS	cholinergic receptor nicotinic delta subunit	protein-coding
233136	chr9	137154401	137154800	+	0	NA	intron (NM_007327, intron 4 of 19)	AluSx|SINE|Alu	14670	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
59676	chr13	28796471	28796880	+	0	NA	Intergenic	AluYc|SINE|Alu	-23288	NM_001384605	23281		NM_015233	ENSG00000132938	MTUS2	CAZIP|ICIS|KIAA0774|TIP150	microtubule associated scaffold protein 2	protein-coding
24221	chr1	236140371	236140730	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-1989	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
112778	chr19	7471801	7472300	+	0	NA	3' UTR (NM_001130955, exon 20 of 20)	3' UTR (NM_001130955, exon 20 of 20)	16985	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
90142	chr17	125671	125830	+	0	NA	Intergenic	L1MC3|LINE|L1	-11819	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
77911	chr15	89241101	89241300	+	0	NA	Intergenic	AluSc|SINE|Alu	-2779	NM_001113378	55215		NM_018193	ENSG00000140525	FANCI	KIAA1794	FA complementation group I	protein-coding
133630	chr2	126765971	126766330	+	0	NA	Intergenic	Intergenic	109992	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
62514	chr13	99498121	99499530	+	0	NA	TTS (NR_133664)	TTS (NR_133664)	481	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
213361	chr7	135673571	135673730	+	0	NA	intron (NM_001130929, intron 2 of 2)	intron (NM_001130929, intron 2 of 2)	11136	NM_001130929	647087		NM_001130929	ENSG00000243317	STMP1	C7orf73|Mm47|Mtlbn|PL-5283	short transmembrane mitochondrial protein 1	protein-coding
208901	chr7	73856551	73856650	+	0	NA	Intergenic	AluSx|SINE|Alu	-4559	NM_182504	135886		NM_182504	ENSG00000175877	TMEM270	WBSCR28	transmembrane protein 270	protein-coding
222902	chr8	142802071	142802230	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-15611	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
100966	chr17	64511451	64512100	+	0	NA	intron (NM_138363, intron 3 of 19)	MER11C|LTR|ERVK	4798	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
44344	chr11	102424071	102424230	+	0	NA	intron (NM_052932, intron 2 of 4)	Tigger15a|DNA|TcMar-Tigger	28615	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
117986	chr19	33514971	33515530	+	0	NA	intron (NM_000285, intron 1 of 14)	intron (NM_000285, intron 1 of 14)	6541	NM_001166056	5184		NM_000285	ENSG00000124299	PEPD	PROLIDASE	peptidase D	protein-coding
71462	chr14	105863571	105863730	+	0	NA	Intergenic	Intergenic	-4097	NR_130466	100616422		NR_130466	ENSG00000264781	MIR4537	-	microRNA 4537	ncRNA
144829	chr20	36843051	36843780	+	0	NA	intron (NM_080627, intron 1 of 14)	intron (NM_080627, intron 1 of 14)	16458	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
193421	chr6	30457071	30457750	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-32099	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
188245	chr5	151047771	151048600	+	0	NA	intron (NM_006058, intron 8 of 17)	intron (NM_006058, intron 8 of 17)	16946	NM_001258455	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
127107	chr2	37637901	37638300	+	0	NA	Intergenic	Intergenic	33542	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
197200	chr6	63592901	63593300	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	20620	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
170039	chr3	182682321	182682950	+	0	NA	Intergenic	CpG	-110869	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
152326	chr22	20393521	20394750	+	0	NA	promoter-TSS (NM_003426)	promoter-TSS (NM_003426)	-16	NM_003426	7625		NM_003426	ENSG00000185252	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding
109243	chr19	510071	512600	+	0	NA	intron (NM_033513, intron 1 of 1)	intron (NM_033513, intron 1 of 1)	3838	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
131751	chr2	98459171	98459330	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	13240	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
20146	chr1	192580371	192581950	+	0	NA	Intergenic	Intergenic	5387	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
239329	chrY	18894321	18894400	+	0	NA	intron (NR_125735, intron 1 of 2)	L1PA3|LINE|L1	-120625	NR_003509	159119		NM_153716	ENSG00000169953	HSFY2	HSF2L|HSFY	heat shock transcription factor Y-linked 2	protein-coding
34326	chr10	132164871	132165430	+	0	NA	intron (NM_001323086, intron 21 of 23)	intron (NM_001323086, intron 21 of 23)	-21798	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
109327	chr19	593721	594380	+	0	NA	intron (NM_001194, intron 1 of 7)	intron (NM_001194, intron 1 of 7)	4169	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
57192	chr12	121452871	121453230	+	0	NA	intron (NM_001005366, intron 13 of 22)	CpG	-8698	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
101278	chr17	66380151	66380250	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	36654	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
197081	chr6	56595501	56595780	+	0	NA	intron (NM_015548, intron 28 of 83)	intron (NM_015548, intron 28 of 83)	47249	NM_001723	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
115340	chr19	15175851	15176300	+	0	NA	intron (NM_000435, intron 24 of 32)	intron (NM_000435, intron 24 of 32)	3275	NR_106853	102465476		NR_106853	ENSG00000275711	MIR6795	hsa-mir-6795	microRNA 6795	ncRNA
229638	chr9	124209851	124209950	+	0	NA	Intergenic	Intergenic	-47706	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
115875	chr19	16567371	16567530	+	0	NA	intron (NM_024881, intron 3 of 5)	AluJr|SINE|Alu	4965	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
149966	chr21	36419921	36420280	+	0	NA	Intergenic	Intergenic	34708	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
122009	chr19	48594571	48594930	+	0	NA	intron (NM_177973, intron 5 of 6)	AluSz|SINE|Alu	-11992	NM_133498	171169		NM_133498	ENSG00000177202	SPACA4	SAMP14	sperm acrosome associated 4	protein-coding
25694	chr10	8895771	8896130	+	0	NA	Intergenic	Intergenic	-2039	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
37656	chr11	22690621	22691200	+	0	NA	intron (NM_001351224, intron 3 of 8)	intron (NM_001351224, intron 3 of 8)	16136	NM_005256	2620		NM_005256	ENSG00000148935	GAS2	GAS-2	growth arrest specific 2	protein-coding
163555	chr3	51709401	51710000	+	0	NA	intron (NM_001349117, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	2632	NM_001349117	2912		NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate metabotropic receptor 2	protein-coding
191163	chr6	4849621	4849880	+	0	NA	intron (NM_001143970, intron 1 of 6)	L2a|LINE|L2	13652	NM_001143970	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
84687	chr16	30775371	30776850	+	0	NA	3' UTR (NM_001286572, exon 20 of 20)	3' UTR (NM_001286572, exon 20 of 20)	11095	NM_001080417	23361		NM_001080417	ENSG00000102870	ZNF629	ZNF|ZNF65	zinc finger protein 629	protein-coding
154546	chr22	36166721	36167400	+	0	NA	promoter-TSS (NM_145642)	promoter-TSS (NM_145642)	-883	NM_145641	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
172035	chr4	1000101	1000300	+	0	NA	intron (NM_001363576, intron 1 of 12)	intron (NM_001363576, intron 1 of 12)	490	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
18101	chr1	160696301	160696700	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK-int|LTR|ERVK	15322	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
239023	chrY	2997621	2998080	+	0	NA	intron (NR_144458, intron 1 of 2)	LTR12C|LTR|ERV1	4776	NR_144458	107987337		NR_144458	ENSG00000233070	ZFY-AS1	ZFY-AS|ZFYAS	ZFY antisense RNA 1	ncRNA
14238	chr1	143231151	143231750	+	0	NA	Intergenic	Intergenic	191142	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
165463	chr3	98690851	98691150	+	0	NA	Intergenic	AluJo|SINE|Alu	-41236	NM_001323362	10402		NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding
164065	chr3	53886001	53886200	+	0	NA	intron (NM_021237, intron 3 of 4)	MER102a|DNA|hAT-Charlie	-3948	NM_022899	93973		NM_022899	ENSG00000113812	ACTR8	ARP8|INO80N|hArp8	actin related protein 8	protein-coding
110477	chr19	2025801	2026450	+	0	NA	Intergenic	AluSz|SINE|Alu	-10411	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
45210	chr11	117826321	117826980	+	0	NA	intron (NM_001204268, intron 6 of 10)	intron (NM_001204268, intron 6 of 10)	1439	NM_021603	486		NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding
109570	chr19	894771	895900	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	1851	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
184746	chr5	109745971	109746230	+	0	NA	intron (NM_002372, intron 4 of 21)	AluSz6|SINE|Alu	56734	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
219071	chr8	65823651	65824150	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	18164	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
106773	chr18	23812221	23812760	+	0	NA	intron (NM_198129, intron 13 of 74)	intron (NM_198129, intron 13 of 74)	-60530	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
200148	chr6	130364421	130364680	+	0	NA	intron (NM_001258275, intron 1 of 13)	intron (NM_001258275, intron 1 of 13)	1318	NM_001258275	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
170333	chr3	184382601	184383450	+	0	NA	exon (NM_003741, exon 10 of 23)	exon (NM_003741, exon 10 of 23)	2715	NM_001304473	8646		NM_003741	ENSG00000090539	CHRD	-	chordin	protein-coding
167231	chr3	128481571	128481930	+	0	NA	intron (NM_032638, intron 5 of 5)	intron (NM_032638, intron 5 of 5)	6171	NM_001145662	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
1066	chr1	1908551	1909850	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-6060	NM_001330313	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
233713	chrX	1308401	1308830	+	0	NA	intron (NM_001379162, intron 11 of 11)	intron (NM_001379162, intron 11 of 11)	14697	NR_037461	100500894		NR_037461	ENSG00000265658	MIR3690	MIR3690-1|MIR3690-2|hsa-mir-3690-1|hsa-mir-3690-2|mir-3690-1|mir-3690-2	microRNA 3690	ncRNA
19635	chr1	180190101	180190730	+	0	NA	intron (NM_001004128, intron 9 of 12)	intron (NM_001004128, intron 9 of 12)	35546	NM_002826	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
14989	chr1	148061951	148062450	+	0	NA	intron (NR_146087, intron 1 of 7)	intron (NR_146087, intron 1 of 7)	12898	NR_146087	728920		NR_146087		PDE4DIPP1	PDE4DIP1	PDE4DIP pseudogene 1	pseudo
186444	chr5	136212201	136212430	+	0	NA	TTS (NM_001376901)	TTS (NM_001376901)	-14340	NR_133682	106478968		NR_133682	ENSG00000250947	TRPC7-AS2	CTB-28J9.2	TRPC7 antisense RNA 2	ncRNA
9032	chr1	44779601	44780450	+	0	NA	Intergenic	AluSp|SINE|Alu	1635	NR_001457	94163		NR_001457	ENSG00000281859	SNORD38B	RNU38B|U38B	small nucleolar RNA, C/D box 38B	snoRNA
149998	chr21	36987901	36988730	+	0	NA	intron (NR_148020, intron 1 of 10)	L1MC4a|LINE|L1	1896	NR_148020	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
64563	chr14	24633971	24634830	+	0	NA	promoter-TSS (NM_004131)	promoter-TSS (NM_004131)	-210	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
238155	chrX	136779001	136780050	+	0	NA	intron (NM_004840, intron 1 of 21)	intron (NM_004840, intron 1 of 21)	1407	NM_004840	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
18808	chr1	167639821	167640480	+	0	NA	intron (NM_001322923, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	9918	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
122303	chr19	49109871	49110330	+	0	NA	Intergenic	Intergenic	-4270	NM_022165	64130		NM_022165	ENSG00000104863	LIN7B	LIN-7B|MALS-2|MALS2|VELI2	lin-7 homolog B, crumbs cell polarity complex component	protein-coding
120005	chr19	41930321	41930650	+	0	NA	TTS (NR_135626)	TTS (NR_135626)	1665	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
73154	chr15	41426571	41426900	+	0	NA	intron (NM_015138, intron 1 of 17)	AluSx|SINE|Alu	9631	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
176699	chr4	101020891	101021650	+	0	NA	Intergenic	Intergenic	219602	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
31764	chr10	98029271	98029880	+	0	NA	intron (NM_001206528, intron 1 of 14)	intron (NM_001206528, intron 1 of 14)	1046	NM_018058	55118		NM_018058	ENSG00000095713	CRTAC1	ASPIC|ASPIC1|CEP-68|CEP68|LOTUS	cartilage acidic protein 1	protein-coding
103784	chr17	79007351	79008300	+	0	NA	intron (NM_001159772, intron 1 of 5)	intron (NM_001159772, intron 1 of 5)	1939	NM_001159772	124583		NM_138793	ENSG00000171302	CANT1	DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
231032	chr9	129607171	129607980	+	0	NA	Intergenic	Intergenic	-1309	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
233614	chrX	373621	374980	+	0	NA	intron (NM_013239, intron 1 of 12)	CpG	12607	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
91645	chr17	5466971	5467130	+	0	NA	intron (NM_020162, intron 1 of 11)	LTR19-int|LTR|ERV1	1932	NM_020162	56919		NM_020162	ENSG00000005100	DHX33	DDX33	DEAH-box helicase 33	protein-coding
106674	chr18	23181671	23182000	+	0	NA	intron (NM_138375, intron 1 of 9)	intron (NM_138375, intron 1 of 9)	26010	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
168536	chr3	144757651	144757750	+	0	NA	Intergenic	LTR12C|LTR|ERV1	784619	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
8549	chr1	41239451	41239550	+	0	NA	intron (NM_012236, intron 1 of 14)	L2c|LINE|L2	2806	NM_001350667	22955		NM_012236	ENSG00000010803	SCMH1	Scml3	Scm polycomb group protein homolog 1	protein-coding
140570	chr2	233328101	233328900	+	0	NA	exon (NM_000541, exon 8 of 16)	exon (NM_000541, exon 8 of 16)	20684	NM_000541	6295		NM_000541	ENSG00000130561	SAG	RP47|RP96|S-AG	S-antigen visual arrestin	protein-coding
85917	chr16	57086601	57087200	+	0	NA	Intergenic	Intergenic	-5683	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
79879	chr16	1532771	1534900	+	0	NA	5' UTR (NM_024600, exon 1 of 3)	5' UTR (NM_024600, exon 1 of 3)	169	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
60776	chr13	45127401	45127800	+	0	NA	intron (NM_004128, intron 1 of 7)	AluJb|SINE|Alu	7090	NM_004128	2963		NM_004128	ENSG00000188342	GTF2F2	BTF4|RAP30|TF2F2|TFIIF	general transcription factor IIF subunit 2	protein-coding
23439	chr1	228414421	228414880	+	0	NA	exon (NM_001024940, exon 2 of 7)	exon (NM_001024940, exon 2 of 7)	2211	NM_016102	51127		NM_016102	ENSG00000162931	TRIM17	RBCC|RNF16|terf	tripartite motif containing 17	protein-coding
168811	chr3	152213421	152213880	+	0	NA	Intergenic	Intergenic	-8221	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
61078	chr13	48334271	48334780	+	0	NA	intron (NM_000321, intron 2 of 26)	intron (NM_000321, intron 2 of 26)	30774	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
230850	chr9	129108051	129108980	+	0	NA	intron (NM_001346547, intron 1 of 13)	intron (NM_001346547, intron 1 of 13)	2278	NM_001346547	1384		NM_000755	ENSG00000095321	CRAT	CAT|CAT1|NBIA8	carnitine O-acetyltransferase	protein-coding
104350	chr17	80985951	80986250	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-5741	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
100998	chr17	64647601	64648330	+	0	NA	intron (NM_022739, intron 1 of 18)	AluJr4|SINE|Alu	14342	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
126518	chr2	28430501	28431180	+	0	NA	Intergenic	Intergenic	-36168	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
103683	chr17	78800351	78801100	+	0	NA	intron (NR_169585, intron 17 of 19)	intron (NR_169585, intron 17 of 19)	-18383	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
10089	chr1	58885971	58886650	+	0	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	101159	NR_108106	100131060		NR_034014		JUN-DT	LINC01135	JUN divergent transcript	ncRNA
227869	chr9	93669701	93670100	+	0	NA	intron (NM_005392, intron 17 of 21)	intron (NM_005392, intron 17 of 21)	75059	NR_049853	100847045		NR_049853	ENSG00000283146	MIR548AU	-	microRNA 548au	ncRNA
224816	chr9	26891921	26893280	+	0	NA	exon (NM_024828, exon 1 of 6)	exon (NM_024828, exon 1 of 6)	202	NM_024828	79886		NM_024828	ENSG00000120159	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
7889	chr1	36467701	36468100	+	0	NA	exon (NM_000760, exon 14 of 17)	exon (NM_000760, exon 14 of 17)	-3516	NM_031280	64960		NM_031280	ENSG00000116898	MRPS15	DC37|MPR-S15|RPMS15|S15mt|uS15m	mitochondrial ribosomal protein S15	protein-coding
208378	chr7	66656071	66656600	+	0	NA	intron (NM_001367722, intron 1 of 7)	AluJr|SINE|Alu	1768	NM_001367727	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
150571	chr21	43153721	43154050	+	0	NA	Intergenic	CpG	-12793	NR_133678	106780825		NR_133678		LOC106780825	-	FOXM1-regulated, gastric cancer associated-like	ncRNA
201937	chr6	151451521	151453200	+	0	NA	promoter-TSS (NM_017909)	promoter-TSS (NM_017909)	102	NM_001286562	79624		NM_024573	ENSG00000146476	ARMT1	C6orf211	acidic residue methyltransferase 1	protein-coding
123762	chr19	55088401	55089080	+	0	NA	TTS (NM_017729).3	TTS (NM_017729).3	8348	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
131939	chr2	99154221	99155880	+	0	NA	promoter-TSS (NM_145199)	promoter-TSS (NM_145199)	-24	NM_001204830	51601		NM_015929	ENSG00000144182	LIPT1	LIPT1D	lipoyltransferase 1	protein-coding
139344	chr2	219627221	219628980	+	0	NA	intron (NR_048551, intron 2 of 22)	intron (NR_048551, intron 2 of 22)	470	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
70787	chr14	103526221	103526880	+	0	NA	Intergenic	Intergenic	-2646	NM_152307	115708		NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding
50117	chr12	44951301	44951500	+	0	NA	Intergenic	L1PA2|LINE|L1	-37472	NM_001145110	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
96251	chr17	39842071	39842500	+	0	NA	intron (NM_183231, intron 1 of 5)	AluSz6|SINE|Alu	21903	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
161881	chr3	45938801	45939650	+	0	NA	intron (NM_024513, intron 14 of 17)	intron (NM_024513, intron 14 of 17)	-4239	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
2873	chr1	11407351	11407850	+	0	NA	Intergenic	L1ME3|LINE|L1	-71555	NM_020780	57540		NM_020780	ENSG00000204624	DISP3	PTCHD2	dispatched RND transporter family member 3	protein-coding
173802	chr4	17765751	17766200	+	0	NA	intron (NM_015688, intron 1 of 17)	LTR12C|LTR|ERV1	15646	NM_015688	27146		NM_015688	ENSG00000047662	FAM184B	-	family with sequence similarity 184 member B	protein-coding
224531	chr9	19226701	19227100	+	0	NA	Intergenic	AluSx|SINE|Alu	-3793	NM_001330640	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
36352	chr11	3917051	3917350	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	61138	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
53002	chr12	57513321	57514480	+	0	NA	intron (NM_004990, intron 15 of 20)	AluSx|SINE|Alu	1212	NR_106816	102465454		NR_106816	ENSG00000284152	MIR6758	hsa-mir-6758	microRNA 6758	ncRNA
60256	chr13	40593571	40593730	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	72991	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
50319	chr12	46661101	46661730	+	0	NA	Intergenic	Intergenic	164582	NM_018018	55089		NM_018018	ENSG00000139209	SLC38A4	ATA3|NAT3|PAAT|SNAT4	solute carrier family 38 member 4	protein-coding
199924	chr6	127886471	127887130	+	0	NA	intron (NM_001164687, intron 1 of 5).2	MER77|LTR|ERVL	14281	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
154579	chr22	36271101	36271300	+	0	NA	Intergenic	L1P3|LINE|L1	15707	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
35815	chr11	2218701	2218900	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	45737	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
198234	chr6	98949301	98950000	+	0	NA	Intergenic	L1MA4|LINE|L1	-1644	NM_012160	26235		NM_012160	ENSG00000112234	FBXL4	FBL4|FBL5|MTDPS13	F-box and leucine rich repeat protein 4	protein-coding
168317	chr3	141615501	141616100	+	0	NA	TTS (NM_001303245)	TTS (NM_001303245)	-47399	NR_136190	646730		NR_136190		LINC02618	-	long intergenic non-protein coding RNA 2618	ncRNA
220539	chr8	100696771	100697730	+	0	NA	Intergenic	Intergenic	5774	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
113109	chr19	8295801	8296000	+	0	NA	Intergenic	AluJr|SINE|Alu	12458	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
178719	chr4	152781751	152782800	+	0	NA	intron (NM_001025593, intron 1 of 7)	intron (NM_001025593, intron 1 of 7)	2321	NM_001025595	27236		NM_014447	ENSG00000164144	ARFIP1	HSU52521	ADP ribosylation factor interacting protein 1	protein-coding
206626	chr7	35890921	35891800	+	0	NA	intron (NM_001788, intron 10 of 12)	Tigger3b|DNA|TcMar-Tigger	90141	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
34096	chr10	125718471	125720500	+	0	NA	promoter-TSS (NR_033847)	promoter-TSS (NR_033847)	8	NR_033847	399821		NM_207425	ENSG00000224023	EDRF1-DT	-	EDRF1 divergent transcript	ncRNA
106120	chr18	9191671	9192050	+	0	NA	intron (NM_001204056, intron 2 of 11)	MER74A|LTR|ERVL	54297	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
13508	chr1	114745321	114745850	+	0	NA	intron (NM_001242891, intron 2 of 20)	MIR1_Amn|SINE|MIR	12399	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
68613	chr14	89620801	89621730	+	0	NA	Intergenic	Intergenic	-2100	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
6118	chr1	27345071	27345630	+	0	NA	exon (NM_001193308, exon 2 of 15)	exon (NM_001193308, exon 2 of 15)	3328	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
88225	chr16	81873831	81874430	+	0	NA	intron (NM_002661, intron 7 of 32)	MER102a|DNA|hAT-Charlie	94839	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
161387	chr3	41202751	41203430	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	3585	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
12717	chr1	109507451	109508000	+	0	NA	exon (NM_020703, exon 2 of 2)	exon (NM_020703, exon 2 of 2)	2002	NM_020703	57463		NM_020703	ENSG00000181754	AMIGO1	ALI2|AMIGO|AMIGO-1	adhesion molecule with Ig like domain 1	protein-coding
96771	chr17	41736101	41736830	+	0	NA	Intergenic	L2|LINE|L2	-1819	NM_001079871	9001		NM_003949	ENSG00000173805	HAP1	HAP2|HIP5|HLP|hHLP1	huntingtin associated protein 1	protein-coding
72019	chr15	28098851	28099850	+	0	NA	promoter-TSS (NM_001300984).2	promoter-TSS (NM_001300984).2	-35	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
171789	chr4	471501	471700	+	0	NA	intron (NM_133474, intron 2 of 2)	L1MA9|LINE|L1	2609	NR_002451	79963		NM_024903	ENSG00000293360	ABCA11P	ABCA11|EST1133530	ATP binding cassette subfamily A member 11, pseudogene	pseudo
87740	chr16	75201101	75201500	+	0	NA	Intergenic	Intergenic	5861	NM_001025200	440387		NM_001025200	ENSG00000168928	CTRB2	-	chymotrypsinogen B2	protein-coding
225410	chr9	35056001	35056280	+	0	NA	TTS (NM_007126)	TTS (NM_007126)	13900	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
186050	chr5	134058921	134059180	+	0	NA	Intergenic	Intergenic	-54075	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
171617	chr3	197446751	197447250	+	0	NA	Intergenic	Intergenic	62661	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
143943	chr20	32772051	32772350	+	0	NA	intron (NM_175849, intron 1 of 19)	intron (NM_175849, intron 1 of 19)	-7652	NM_175850	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
198380	chr6	105485671	105485930	+	0	NA	Intergenic	Intergenic	-82718	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
54442	chr12	91786671	91787030	+	0	NA	Intergenic	Eulor8|DNA|TcMar?	354863	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
197814	chr6	87725401	87725930	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-23432	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
85652	chr16	56193121	56193530	+	0	NA	non-coding (NR_026889, exon 1 of 1)	non-coding (NR_026889, exon 1 of 1)	1200	NR_026889	26077		NR_026889	ENSG00000261439	GNAO1-AS1	DKFZP434H168	GNAO1 antisense RNA 1	ncRNA
19412	chr1	174173321	174173780	+	0	NA	intron (NM_001366447, intron 1 of 20)	intron (NM_001366447, intron 1 of 20)	14030	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
30996	chr10	88172121	88172580	+	0	NA	Intergenic	L1MA5|LINE|L1	308725	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
7359	chr1	32797251	32797750	+	0	NA	intron (NM_003680, intron 5 of 12)	intron (NM_003680, intron 5 of 12)	-19942	NM_001256121	64766		NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding
191310	chr6	6724451	6724950	+	0	NA	Intergenic	Intergenic	-101874	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
103266	chr17	77691651	77691950	+	0	NA	Intergenic	Intergenic	36759	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
232356	chr9	135698801	135699000	+	0	NA	intron (NM_001012415, intron 2 of 6)	intron (NM_001012415, intron 2 of 6)	581	NM_001101677	402381		NM_001012415	ENSG00000165643	SOHLH1	C9orf157|NOHLH|ODG5|SPATA27|SPGF32|TEB2|bA100C15.3|bHLHe80	spermatogenesis and oogenesis specific basic helix-loop-helix 1	protein-coding
178687	chr4	152530601	152531880	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	3793	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
96948	chr17	42187871	42188230	+	0	NA	Intergenic	L2b|LINE|L2	-2598	NM_001524	3060		NM_001524	ENSG00000161610	HCRT	NRCLP1|OX|PPOX	hypocretin neuropeptide precursor	protein-coding
79661	chr16	1200771	1200930	+	0	NA	intron (NM_021098, intron 8 of 34)	intron (NM_021098, intron 8 of 34)	24418	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
159359	chr3	13308121	13308900	+	0	NA	Intergenic	Intergenic	-25253	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
213438	chr7	138582451	138582550	+	0	NA	intron (NM_015905, intron 17 of 18)	AluY|SINE|Alu	81724	NM_001331192	136306		NM_174959	ENSG00000157703	SVOPL	SLC22B5	SVOP like	protein-coding
74604	chr15	60582251	60583530	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	9636	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
204423	chr7	3111051	3111800	+	0	NA	Intergenic	AluJb|SINE|Alu	47148	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
187326	chr5	141642751	141643450	+	0	NA	intron (NM_033449, intron 17 of 19)	intron (NM_033449, intron 17 of 19)	6103	NM_173828	285613		NM_173828	ENSG00000164620	RELL2	C5orf16	RELT like 2	protein-coding
97579	chr17	44099051	44099580	+	0	NA	intron (NM_001382393, intron 3 of 26)	intron (NM_001382393, intron 3 of 26)	-16597	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
205025	chr7	6502751	6502850	+	0	NA	exon (NM_001145118, exon 18 of 22)	exon (NM_001145118, exon 18 of 22)	-18648	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
109821	chr19	1170751	1170850	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	3468	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
158125	chr22	50103001	50103200	+	0	NA	intron (NM_001164104, intron 3 of 25)	intron (NM_001164104, intron 3 of 25)	12844	NM_001164105	54456		NM_018995	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8|SPGF73	Mov10 like RNA helicase 1	protein-coding
41913	chr11	67281001	67281630	+	0	NA	intron (NM_001619, intron 8 of 20)	intron (NM_001619, intron 8 of 20)	-7988	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
155362	chr22	38287371	38287730	+	0	NA	Intergenic	L2b|LINE|L2	-14540	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
11040	chr1	84988201	84989050	+	0	NA	intron (NM_001330647, intron 1 of 14)	L2a|LINE|L2	8488	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
5536	chr1	25815521	25816450	+	0	NA	3' UTR (NM_020451, exon 13 of 13)	3' UTR (NM_020451, exon 13 of 13)	-3921	NM_001099627	56181		NM_019557	ENSG00000117640	MTFR1L	FAM54B|HYST1888|MST116|MSTP116	mitochondrial fission regulator 1 like	protein-coding
467	chr1	1147101	1147500	+	0	NA	Intergenic	Intergenic	10283	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
196435	chr6	43457221	43457780	+	0	NA	promoter-TSS (NM_001286655)	promoter-TSS (NM_001286655)	-868	NM_206539	65989		NM_023932	ENSG00000171462	DLK2	DLK-2|EGFL9	delta like non-canonical Notch ligand 2	protein-coding
125434	chr2	11866971	11867130	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-30064	NR_036226	100422996		NR_036226	ENSG00000265172	MIR4262	-	microRNA 4262	ncRNA
39839	chr11	62311051	62311750	+	0	NA	Intergenic	Intergenic	-12325	NM_206998	404552		NM_206998	ENSG00000197745	SCGB1D4	IIS	secretoglobin family 1D member 4	protein-coding
61103	chr13	48448151	48448450	+	0	NA	intron (NM_000321, intron 17 of 26)	intron (NM_000321, intron 17 of 26)	-3631	NM_005767	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
94417	chr17	29111521	29112140	+	0	NA	exon (NM_001346766, exon 17 of 42)	exon (NM_001346766, exon 17 of 42)	28559	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
162061	chr3	46848351	46849030	+	0	NA	Intergenic	L2b|LINE|L2	-14595	NR_160554	339906		NM_182702	ENSG00000293419	PRSS42P	PRSS42|TESSP2	serine protease 42, pseudogene	pseudo
163632	chr3	52058671	52059650	+	0	NA	Intergenic	Intergenic	-2589	NM_001947	1849		NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding
5704	chr1	26376401	26376730	+	0	NA	Intergenic	MIR|SINE|MIR	-3771	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
51955	chr12	53752871	53753100	+	0	NA	intron (NR_104332, intron 2 of 2)	intron (NR_104332, intron 2 of 2)	-1150	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
48710	chr12	10670451	10670780	+	0	NA	intron (NM_018423, intron 1 of 10)	L1MA8|LINE|L1	3437	NM_018423	55359		NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding
174031	chr4	26857151	26858780	+	0	NA	Intergenic	Intergenic	2279	NR_134675	105374546		NR_134673		STIM2-AS1	-	STIM2 antisense RNA 1	ncRNA
159053	chr3	11625651	11625750	+	0	NA	intron (NM_014667, intron 2 of 5)	intron (NM_014667, intron 2 of 5)	18215	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
9499	chr1	51261321	51261580	+	0	NA	intron (NM_014372, intron 1 of 2)	intron (NM_014372, intron 1 of 2)	25177	NM_014372	26994		NM_014372	ENSG00000123091	RNF11	CGI-123|SID1669	ring finger protein 11	protein-coding
103298	chr17	77864351	77864850	+	0	NA	Intergenic	Intergenic	19487	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
174304	chr4	38514601	38515000	+	0	NA	intron (NR_149076, intron 1 of 2)	intron (NR_149076, intron 1 of 2)	5033	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
88672	chr16	85676551	85676850	+	0	NA	TTS (NM_014615)	TTS (NM_014615)	12254	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
135245	chr2	159710801	159711000	+	0	NA	intron (NR_110586, intron 1 of 2)	intron (NR_110586, intron 1 of 2)	1542	NR_110586	29994		NM_013450	ENSG00000123636	BAZ2B	WALp4	bromodomain adjacent to zinc finger domain 2B	protein-coding
177265	chr4	109436571	109436950	+	0	NA	intron (NM_001318085, intron 1 of 23)	MER21B|LTR|ERVL	-2943	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
62135	chr13	95688501	95688900	+	0	NA	intron (NM_006260, intron 1 of 11)	AluSz6|SINE|Alu	11561	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
100612	chr17	63533401	63533800	+	0	NA	intron (NM_173092, intron 4 of 14)	intron (NM_173092, intron 4 of 14)	10242	NM_030779	81033		NM_030779	ENSG00000173826	KCNH6	ERG-2|ERG2|HERG2|Kv11.2|hERG-2	potassium voltage-gated channel subfamily H member 6	protein-coding
176970	chr4	104492401	104493000	+	0	NA	intron (NM_025212, intron 1 of 2)	intron (NM_025212, intron 1 of 2)	1735	NR_125926	101929468		NR_125926	ENSG00000245384	CXXC4-AS1	-	CXXC4 antisense RNA 1	ncRNA
230782	chr9	128922001	128922880	+	0	NA	intron (NM_174933, intron 3 of 11)	MIR3|SINE|MIR	157	NM_001100877	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
117578	chr19	21483821	21484180	+	0	NA	non-coding (NR_037194, exon 1 of 11)	non-coding (NR_037194, exon 1 of 11)	285	NR_037194	400680		NR_037194	ENSG00000268658	LINC00664	-	long intergenic non-protein coding RNA 664	ncRNA
2523	chr1	9710721	9710980	+	0	NA	intron (NM_001350234, intron 3 of 23)	AluSp|SINE|Alu	19383	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
111150	chr19	3295921	3296580	+	0	NA	3' UTR (NM_001172673, exon 12 of 12)	3' UTR (NM_001172673, exon 12 of 12)	-63380	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
140821	chr2	236545671	236546200	+	0	NA	Intergenic	Intergenic	-23890	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
83299	chr16	24252921	24253480	+	0	NA	TTS (NR_146569)	TTS (NR_146569)	-3135	NM_006539	10368		NM_006539	ENSG00000006116	CACNG3	-	calcium voltage-gated channel auxiliary subunit gamma 3	protein-coding
211656	chr7	106266201	106266400	+	0	NA	intron (NM_005746, intron 6 of 10)	intron (NM_005746, intron 6 of 10)	18683	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
107911	chr18	57557821	57558180	+	0	NA	intron (NM_001371094, intron 6 of 9)	intron (NM_001371094, intron 6 of 9)	28702	NM_001371095	2235		NM_000140	ENSG00000066926	FECH	EPP|EPP1|FCE	ferrochelatase	protein-coding
213867	chr7	142323721	142324350	+	0	NA	Intergenic	Intergenic	-51786	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
199199	chr6	111784101	111784300	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-24283	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
210553	chr7	100337801	100338080	+	0	NA	intron (NR_036570, intron 1 of 16)	AluSx1|SINE|Alu	-1633	NR_003613	5379		NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
228117	chr9	96621001	96621600	+	0	NA	Intergenic	Intergenic	-1457	NM_033331	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
222535	chr8	140583371	140583730	+	0	NA	intron (NM_012154, intron 2 of 18)	Tigger3a|DNA|TcMar-Tigger	52083	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
51437	chr12	52034051	52034350	+	0	NA	intron (NM_001202233, intron 1 of 7)	intron (NM_001202233, intron 1 of 7)	-3515	NM_001202234	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
161014	chr3	37855171	37855730	+	0	NA	intron (NR_110532, intron 1 of 5)	intron (NR_110532, intron 1 of 5)	6330	NR_110532	101928153		NR_110531	ENSG00000235257	ITGA9-AS1	-	ITGA9 antisense RNA 1	ncRNA
49084	chr12	14442251	14442350	+	0	NA	intron (NM_181352, intron 5 of 14)	Merlin1_HS|DNA|Merlin	57019	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
46596	chr11	128526771	128526930	+	0	NA	non-coding (NR_120581, exon 2 of 4)	non-coding (NR_120581, exon 2 of 4)	708	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
76897	chr15	77991801	77992180	+	0	NA	Intergenic	Intergenic	2235	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
184779	chr5	110751551	110752950	+	0	NA	intron (NM_001303249, intron 5 of 7)	intron (NM_001303249, intron 5 of 7)	13243	NM_138773	91137		NM_138773	ENSG00000164209	SLC25A46	HMSN6B|PCH1E	solute carrier family 25 member 46	protein-coding
211906	chr7	112286071	112286530	+	0	NA	intron (NM_021994, intron 1 of 11)	intron (NM_021994, intron 1 of 11)	79605	NM_021994	11179		NM_021994	ENSG00000198839	ZNF277	NRIF4|ZNF277P	zinc finger protein 277	protein-coding
9009	chr1	44722871	44723310	+	0	NA	intron (NM_001145636, intron 6 of 11)	intron (NM_001145636, intron 6 of 11)	-1189	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
12925	chr1	110648401	110649230	+	0	NA	Intergenic	Intergenic	-17375	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
99030	chr17	48859921	48860230	+	0	NA	intron (NM_001261391, intron 11 of 13)	AluSx1|SINE|Alu	29040	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
199042	chr6	111471471	111471830	+	0	NA	intron (NM_001286431, intron 3 of 34)	MIRb|SINE|MIR	11568	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
168084	chr3	138197151	138197250	+	0	NA	intron (NM_001363942, intron 2 of 21)	intron (NM_001363942, intron 2 of 21)	9669	NM_015396	25852		NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
80704	chr16	3068621	3069030	+	0	NA	intron (NM_001369587, intron 5 of 5)	intron (NM_001369587, intron 5 of 5)	3041	NM_001012636	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
149612	chr21	33375451	33375550	+	0	NA	Intergenic	Intergenic	-27396	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
150820	chr21	43985751	43986080	+	0	NA	3' UTR (NM_001369881, exon 10 of 10)	3' UTR (NM_001369881, exon 10 of 10)	-26394	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
221187	chr8	120729801	120730180	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-31263	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
26737	chr10	22688121	22688680	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	25708	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
16644	chr1	155133601	155133950	+	0	NA	exon (NM_004428, exon 4 of 5)	exon (NM_004428, exon 4 of 5)	-1600	NM_001287590	55974		NM_018845	ENSG00000169241	SLC50A1	HsSWEET1|RAG1AP1|SCP|SWEET1|slv	solute carrier family 50 member 1	protein-coding
105708	chr18	2690451	2690850	+	0	NA	intron (NM_015295, intron 7 of 47)	AluSx|SINE|Alu	34924	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
102661	chr17	76078971	76079300	+	0	NA	promoter-TSS (NM_180990)	promoter-TSS (NM_180990)	-47	NM_180990	353174		NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding
103032	chr17	77091221	77091680	+	0	NA	intron (NM_001204410, intron 2 of 18)	intron (NM_001204410, intron 2 of 18)	2033	NR_106997	102466864		NR_106997	ENSG00000284250	MIR6516	hsa-mir-6516	microRNA 6516	ncRNA
128662	chr2	61453251	61453350	+	0	NA	intron (NM_014709, intron 1 of 79)	AluJb|SINE|Alu	17787	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
231784	chr9	132302271	132302430	+	0	NA	intron (NM_001351527, intron 11 of 25)	AluY|SINE|Alu	52506	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
108783	chr18	77220571	77221130	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	-28998	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
157322	chr22	44618151	44618730	+	0	NA	intron (NR_044991, intron 3 of 4)	intron (NR_044991, intron 3 of 4)	6979	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
144410	chr20	35287071	35288280	+	0	NA	exon (NM_178468, exon 4 of 4)	exon (NM_178468, exon 4 of 4)	2424	NR_109815	140846		NR_109815	ENSG00000235214	FAM83C-AS1	C20orf120|NCRNA00154|dJ614O4.3	FAM83C antisense RNA 1	ncRNA
81352	chr16	4801071	4801230	+	0	NA	intron (NR_046480, intron 3 of 9)	MIRb|SINE|MIR	1483	NM_024589	79641		NM_024589	ENSG00000067836	ROGDI	KTZS|RAV2|ROGD1	rogdi atypical leucine zipper	protein-coding
114760	chr19	13610071	13610230	+	0	NA	Intergenic	Intergenic	-103671	NM_023035	773		NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|DEE42|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6	calcium voltage-gated channel subunit alpha1 A	protein-coding
26620	chr10	22342501	22342700	+	0	NA	Intergenic	Intergenic	-2845	NM_001253855	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
5355	chr1	25332871	25334030	+	0	NA	intron (NR_135790, intron 1 of 2)	L2a|LINE|L2	4804	NM_001321772	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
132504	chr2	106066601	106066800	+	0	NA	intron (NM_032411, intron 1 of 3)	intron (NM_032411, intron 1 of 3)	1012	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
187688	chr5	143338901	143339130	+	0	NA	intron (NR_157096, intron 1 of 7)	Tigger3b|DNA|TcMar-Tigger	64268	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
160012	chr3	18394321	18394780	+	0	NA	exon (NM_001322872, exon 8 of 12)	exon (NM_001322872, exon 8 of 12)	30789	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
12209	chr1	100393921	100395050	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	41979	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
175225	chr4	56911471	56911830	+	0	NA	intron (NM_001193508, intron 2 of 3)	MIR|SINE|MIR	2737	NM_001193508	5978		NM_005612	ENSG00000084093	REST	DFNA27|GINGF5|HGF5|NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
67149	chr14	68733151	68733550	+	0	NA	Intergenic	Intergenic	59717	NM_004926	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
212089	chr7	115476121	115476430	+	0	NA	Intergenic	Intergenic	105166	NR_145801	109623459		NR_145801	ENSG00000202377	SNORA25B	-	small nucleolar RNA, H/ACA box 25B	snoRNA
101713	chr17	68516171	68516330	+	0	NA	intron (NM_212471, intron 2 of 10)	intron (NM_212471, intron 2 of 10)	856	NM_001276290	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
238714	chrX	154123371	154124180	+	0	NA	Intergenic	AluSz|SINE|Alu	-20468	NM_020061	5956		NM_020061	ENSG00000102076	OPN1LW	CBBM|CBP|COD5|RCP|ROP	opsin 1, long wave sensitive	protein-coding
61735	chr13	74132901	74133300	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	829	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
185398	chr5	128197901	128198450	+	0	NA	Intergenic	L2c|LINE|L2	114409	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
154411	chr22	35330151	35331480	+	0	NA	intron (NR_156428, intron 7 of 13)	MIR|SINE|MIR	-4825	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
96537	chr17	40354501	40355600	+	0	NA	intron (NM_000964, intron 7 of 8)	intron (NM_000964, intron 7 of 8)	9687	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
114491	chr19	12759321	12759780	+	0	NA	Intergenic	AluSx1|SINE|Alu	7759	NM_017682	54831		NM_017682	ENSG00000039987	BEST2	VMD2L1	bestrophin 2	protein-coding
62703	chr13	102846501	102847000	+	0	NA	intron (NM_000123, intron 1 of 14)	MER2|DNA|TcMar-Tigger	718	NM_000123	2073		NM_000123	ENSG00000134899	ERCC5	COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC	ERCC excision repair 5, endonuclease	protein-coding
187415	chr5	141967301	141967780	+	0	NA	intron (NM_183399, intron 1 of 7)	MER45R|DNA|hAT-Tip100	703	NM_183399	9604		NM_004290	ENSG00000013561	RNF14	ARA54|HFB30|HRIHFB2038|TRIAD2	ring finger protein 14	protein-coding
79369	chr16	638801	639300	+	0	NA	non-coding (NR_149003, exon 4 of 4)	non-coding (NR_149003, exon 4 of 4)	2098	NR_149003	100287175		NR_149003		LOC100287175	-	uncharacterized LOC100287175	ncRNA
18607	chr1	165697921	165699530	+	0	NA	promoter-TSS (NR_036683)	promoter-TSS (NR_036683)	-25	NR_036683	440700		NR_036683	ENSG00000293132	LOC440700	-	carbonic anhydrase 14 pseudogene	pseudo
46981	chr12	14821	15830	+	0	NA	intron (NR_130745, intron 9 of 10)	intron (NR_130745, intron 9 of 10)	16690	NR_130745	100288778		NR_130745	ENSG00000226210	WASH8P	-	WAS protein family homolog 8, pseudogene	pseudo
59132	chr13	21402651	21403330	+	0	NA	intron (NM_153251, intron 4 of 11)	intron (NM_153251, intron 4 of 11)	56313	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
126740	chr2	30208371	30208750	+	0	NA	Intergenic	Intergenic	21126	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
230586	chr9	128563271	128563800	+	0	NA	intron (NM_001375312, intron 2 of 57)	intron (NM_001375312, intron 2 of 57)	10948	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
50611	chr12	48679651	48679980	+	0	NA	exon (NM_017822, exon 3 of 10)	exon (NM_017822, exon 3 of 10)	2423	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
129543	chr2	69773371	69773730	+	0	NA	intron (NM_001365496, intron 2 of 13)	(TGTT)n|Simple_repeat|Simple_repeat	25448	NR_164155	107985770		NR_164153	ENSG00000288869	SMANTIS	ANXA4-AS|n342419	SMARCA4 interacting SWI/SNF chromatin remodeling complex scaffold lncRNA	ncRNA
114517	chr19	12801251	12802800	+	0	NA	promoter-TSS (NM_005809)	promoter-TSS (NM_005809)	-225	NM_005809	7001		NM_005809	ENSG00000167815	PRDX2	HEL-S-2a|NKEF-B|NKEFB|PRP|PRX2|PRXII|PTX1|TDPX1|TPX1|TSA	peroxiredoxin 2	protein-coding
154597	chr22	36287921	36288450	+	0	NA	intron (NM_002473, intron 34 of 40)	intron (NM_002473, intron 34 of 40)	-1278	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
121578	chr19	47277321	47277850	+	0	NA	Intergenic	AluSx1|SINE|Alu	2700	NM_178511	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
127150	chr2	37833521	37833930	+	0	NA	intron (NR_110012, intron 2 of 3)	Charlie15a|DNA|hAT-Charlie	-4014	NR_110011	101929559		NR_110011	ENSG00000237803	PIRAT1	LINC00211|NCRNA00211|PIRAT	PU.1 (SPI1) induced regulator of S100A8 and S100A9 alarmin transcription 1	ncRNA
235405	chrX	45664301	45664500	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-66688	NR_102268	392452		NR_102268		MFFP3	-	MFF pseudogene 3	pseudo
203939	chr7	1542801	1543600	+	0	NA	TTS (NM_002360)	TTS (NM_002360)	-8320	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
197257	chr6	70410521	70411480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2404	NM_001331006	57579		NM_020819	ENSG00000082269	FAM135A	KIAA1411	family with sequence similarity 135 member A	protein-coding
86764	chr16	67664401	67665300	+	0	NA	intron (NR_138150, intron 2 of 5)	intron (NR_138150, intron 2 of 5)	1900	NM_032140	84080		NM_032140	ENSG00000124074	ENKD1	C16orf48|DAKV6410|FBB11	enkurin domain containing 1	protein-coding
108684	chr18	77001951	77002250	+	0	NA	intron (NM_001025090, intron 1 of 5)	intron (NM_001025090, intron 1 of 5)	14955	NM_001025090	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
234003	chrX	3638351	3638700	+	0	NA	intron (NM_005044, intron 4 of 8)	intron (NM_005044, intron 4 of 8)	-20962	NR_046643	100873944		NR_046643	ENSG00000236188	PRKX-AS1	-	PRKX antisense RNA 1	ncRNA
133937	chr2	130530921	130531750	+	0	NA	Intergenic	MER74A|LTR|ERVL	10113	NM_001079530	653275		NM_001079530	ENSG00000152093	CFC1B	-	cryptic, EGF-CFC family member 1B	protein-coding
156109	chr22	40087121	40087930	+	0	NA	intron (NM_001024843, intron 1 of 23)	L2c|LINE|L2	42708	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
231683	chr9	131699151	131699250	+	0	NA	intron (NM_001377935, intron 1 of 26)	L2a|LINE|L2	10642	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
227656	chr9	92968891	92969800	+	0	NA	intron (NM_001369951, intron 1 of 17)	intron (NM_001369951, intron 1 of 17)	-5091	NM_033086	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
152293	chr22	20316421	20316780	+	0	NA	intron (NM_033257, intron 2 of 4)	intron (NM_033257, intron 2 of 4)	3460	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
112213	chr19	5696551	5696650	+	0	NA	intron (NR_076392, intron 12 of 18)	intron (NR_076392, intron 12 of 18)	6305	NM_015414	25873		NM_015414	ENSG00000130255	RPL36	L36|eL36	ribosomal protein L36	protein-coding
200167	chr6	130575721	130576480	+	0	NA	Intergenic	Intergenic	138983	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
44383	chr11	102612971	102613290	+	0	NA	intron (NM_004771, intron 2 of 9)	intron (NM_004771, intron 2 of 9)	12202	NM_004771	9313		NM_004771	ENSG00000137674	MMP20	AI2A2|MMP-20	matrix metallopeptidase 20	protein-coding
130169	chr2	76445251	76445350	+	0	NA	Intergenic	7SK|RNA|RNA	-540665	NR_110284	101927907		NR_110284	ENSG00000234653	LRRTM4-AS1	-	LRRTM4 antisense RNA 1	ncRNA
217187	chr8	26317821	26318430	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	24909	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
102805	chr17	76408401	76409200	+	0	NA	intron (NM_022066, intron 1 of 17)	intron (NM_022066, intron 1 of 17)	23522	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
189785	chr5	176723271	176723740	+	0	NA	Intergenic	Intergenic	-19700	NR_108030	102577424		NR_108030	ENSG00000248859	LINC01574	HI-LNC12	long intergenic non-protein coding RNA 1574	ncRNA
112982	chr19	7870201	7871040	+	0	NA	exon (NM_001190467, exon 5 of 6)	exon (NM_001190467, exon 5 of 6)	3770	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
238613	chrX	153941371	153942130	+	0	NA	intron (NM_002910, intron 7 of 10)	intron (NM_002910, intron 7 of 10)	2893	NM_002910	5973		NM_002910	ENSG00000102032	RENBP	RBP|RNBP	renin binding protein	protein-coding
206388	chr7	30741821	30742080	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-10185	NM_006774	11185		NM_006774	ENSG00000241644	INMT	TEMT	indolethylamine N-methyltransferase	protein-coding
227906	chr9	94156871	94157230	+	0	NA	Intergenic	Intergenic	-18907	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
101614	chr17	68195821	68196800	+	0	NA	Intergenic	CpG	-2350	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
46792	chr11	130121521	130122150	+	0	NA	intron (NR_168393, intron 5 of 12)	intron (NR_168393, intron 5 of 12)	-37947	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
21024	chr1	202964051	202965230	+	0	NA	exon (NM_016243, exon 6 of 9)	exon (NM_016243, exon 6 of 9)	2617	NM_016243	51706		NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
47269	chr12	1574171	1574600	+	0	NA	intron (NM_152441, intron 1 of 1)	intron (NM_152441, intron 1 of 1)	20196	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
30581	chr10	80110271	80110930	+	0	NA	Intergenic	Intergenic	-21061	NR_138551	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
104307	chr17	80895351	80895850	+	0	NA	intron (NM_020761, intron 20 of 33)	intron (NM_020761, intron 20 of 33)	75613	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
234309	chrX	13722271	13722650	+	0	NA	intron (NM_014563, intron 1 of 4)	L3|LINE|CR1	12160	NM_001011658	6399		NM_014563	ENSG00000196459	TRAPPC2	MIP2A|SEDL|SEDT|TRAPPC2P1|TRS20|ZNF547L|hYP38334	trafficking protein particle complex subunit 2	protein-coding
69711	chr14	98198001	98199030	+	0	NA	Intergenic	Intergenic	-220391	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
56857	chr12	120259971	120260130	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	5680	NM_002859	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
129270	chr2	68403001	68403800	+	0	NA	Intergenic	L1PA7|LINE|L1	38118	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
159585	chr3	15064071	15065880	+	0	NA	intron (NR_135246, intron 1 of 4)	CpG	340	NR_135247	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
199177	chr6	111757171	111757880	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	1606	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
184797	chr5	111225901	111226700	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	1916	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
201630	chr6	149450651	149452080	+	0	NA	exon (NM_207360, exon 6 of 6)	exon (NM_207360, exon 6 of 6)	33649	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
51089	chr12	49966851	49967950	+	0	NA	Intergenic	Intergenic	-4476	NR_110589	101927318		NR_110589	ENSG00000257588	AQP5-AS1	MIAC	AQP5 and AQP2 antisense RNA 2	ncRNA
55081	chr12	96906321	96908830	+	0	NA	5' UTR (NM_001135175, exon 1 of 15)	5' UTR (NM_001135175, exon 1 of 15)	109	NM_001135175	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
27779	chr10	35414371	35415000	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	77811	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
132165	chr2	101766621	101767180	+	0	NA	intron (NM_001384572, intron 1 of 29)	MER51A|LTR|ERV1	68635	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
101136	chr17	65040821	65041130	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	14799	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
37525	chr11	18621871	18622630	+	0	NA	intron (NM_194285, intron 1 of 5)	AluJo|SINE|Alu	12092	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
9235	chr1	45805071	45805230	+	0	NA	intron (NM_001319245, intron 1 of 28)	AluSx1|SINE|Alu	1537	NM_001319245	23139		NM_015112	ENSG00000086015	MAST2	MAST205|MTSSK	microtubule associated serine/threonine kinase 2	protein-coding
9383	chr1	47316201	47316400	+	0	NA	Intergenic	AluJr|SINE|Alu	-1404	NM_001377417	6491		NM_003035	ENSG00000123473	STIL	MCPH7|SIL	STIL centriolar assembly protein	protein-coding
100809	chr17	64059651	64060680	+	0	NA	intron (NM_001433, intron 11 of 21)	L2b|LINE|L2	-39531	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
6278	chr1	27598201	27598600	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	5094	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
42600	chr11	72082151	72082550	+	0	NA	intron (NM_001145308, intron 1 of 6)	L2b|LINE|L2	1500	NM_001318803	120356739		NM_145309	ENSG00000184154	LRRC51	-	leucine rich repeat containing 51	protein-coding
11117	chr1	86394521	86394780	+	0	NA	intron (NM_020729, intron 1 of 17)	intron (NM_020729, intron 1 of 17)	1411	NM_001366784	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
230807	chr9	129023571	129024050	+	0	NA	intron (NM_001369914, intron 1 of 10)	intron (NM_001369914, intron 1 of 10)	4521	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
90218	chr17	501171	501480	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-55385	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
17695	chr1	158147471	158147800	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-6995	NR_033946	646268		NR_033946	ENSG00000231666	LINC01704	-	long intergenic non-protein coding RNA 1704	ncRNA
82598	chr16	18826651	18827130	+	0	NA	intron (NM_015092, intron 55 of 62)	L1HS|LINE|L1	-25341	NM_015161	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
176858	chr4	102609971	102610350	+	0	NA	intron (NM_001382625, intron 20 of 24)	intron (NM_001382625, intron 20 of 24)	-107674	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
84181	chr16	29823121	29823380	+	0	NA	TTS (NM_024516)	TTS (NM_024516)	2788	NM_005115	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
219893	chr8	85660551	85661230	+	0	NA	TTS (NR_003594).2	TTS (NR_003594).2	1623	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
97320	chr17	43251051	43251900	+	0	NA	TTS (NR_002716).5	TTS (NR_002716).5	544	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
71995	chr15	25847201	25848180	+	0	NA	intron (NM_024490, intron 1 of 20)	AluJo|SINE|Alu	1135	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
43745	chr11	86105951	86106050	+	0	NA	Intergenic	L1PA3|LINE|L1	-36140	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
78763	chr15	99111201	99111400	+	0	NA	intron (NM_145728, intron 1 of 3)	intron (NM_145728, intron 1 of 3)	6220	NM_145728	23336		NM_015286	ENSG00000182253	SYNM	DMN|SYN	synemin	protein-coding
5166	chr1	24927531	24928000	+	0	NA	intron (NM_001031680, intron 2 of 5)	intron (NM_001031680, intron 2 of 5)	2511	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
233278	chr9	137306851	137306950	+	0	NA	TTS (NM_017820)	TTS (NM_017820)	-4629	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
210085	chr7	97006051	97007030	+	0	NA	intron (NM_005222, intron 1 of 2)	CpG	987	NM_005222	1750		NM_005222	ENSG00000006377	DLX6	-	distal-less homeobox 6	protein-coding
84888	chr16	31193101	31194550	+	0	NA	non-coding (NR_028388, exon 14 of 14)	non-coding (NR_028388, exon 14 of 14)	-8060	NR_102400	100652740		NR_102400	ENSG00000261359	PYCARD-AS1	C16orf98|PYCARDOS	PYCARD antisense RNA 1	ncRNA
207065	chr7	39833251	39833950	+	0	NA	Intergenic	Intergenic	100032	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
186834	chr5	139416471	139416830	+	0	NA	intron (NM_152686, intron 7 of 7)	MIRb|SINE|MIR	-12561	NM_194296	202051		NM_194296	ENSG00000170469	SPATA24	CCDC161|T6441	spermatogenesis associated 24	protein-coding
185366	chr5	127567151	127567750	+	0	NA	Intergenic	MER83B|LTR|ERV1	49810	NM_001286808	133619		NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
88909	chr16	87809651	87809950	+	0	NA	Intergenic	Intergenic	24860	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
106218	chr18	11827921	11828180	+	0	NA	intron (NM_182978, intron 5 of 11)	intron (NM_182978, intron 5 of 11)	-23363	NM_020412	57132		NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
13346	chr1	113835621	113836100	+	0	NA	intron (NM_012411, intron 11 of 18)	intron (NM_012411, intron 11 of 18)	-20775	NR_037864	100287722		NR_037864	ENSG00000226167	AP4B1-AS1	-	AP4B1 antisense RNA 1	ncRNA
17660	chr1	157580221	157580530	+	0	NA	intron (NM_031282, intron 7 of 11)	intron (NM_031282, intron 7 of 11)	17710	NM_031282	83417		NM_031282	ENSG00000163518	FCRL4	CD307d|FCRH4|IGFP2|IRTA1	Fc receptor like 4	protein-coding
203751	chr7	1167301	1167500	+	0	NA	Intergenic	AluSz6|SINE|Alu	6615	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
4430	chr1	21278751	21279330	+	0	NA	intron (NM_001397, intron 3 of 18)	intron (NM_001397, intron 3 of 18)	575	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
190933	chr6	2879871	2880630	+	0	NA	Intergenic	L1PBa1|LINE|L1	-3738	NR_110841	101927730		NR_110841		SERPINB9-AS1	-	SERPINB9 antisense RNA 1	ncRNA
149809	chr21	34994951	34995050	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	44426	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
71960	chr15	23714551	23714730	+	0	NA	Intergenic	L1PA3|LINE|L1	-27335	NM_002487	4692		NM_002487	ENSG00000182636	NDN	HsT16328|PWCR	necdin, MAGE family member	protein-coding
94650	chr17	30151701	30151900	+	0	NA	intron (NM_032141, intron 2 of 6)	AluSp|SINE|Alu	-34640	NR_036149	100423003		NR_036149	ENSG00000284399	MIR3184	-	microRNA 3184	ncRNA
204231	chr7	2538801	2539000	+	0	NA	exon (NM_001350626, exon 14 of 14)	exon (NM_001350626, exon 14 of 14)	11826	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
138730	chr2	213234971	213235130	+	0	NA	Intergenic	Intergenic	49159	NR_161186	100130451		NR_144752		SPAG16-DT	-	SPAG16 divergent transcript	ncRNA
212383	chr7	128031891	128032780	+	0	NA	promoter-TSS (NM_022143)	promoter-TSS (NM_022143)	-898	NM_022143	64101		NM_022143	ENSG00000128594	LRRC4	NAG14|NGL-2	leucine rich repeat containing 4	protein-coding
26571	chr10	21745821	21746750	+	0	NA	Intergenic	Intergenic	212053	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
152415	chr22	20571051	20572430	+	0	NA	intron (NM_001293234, intron 8 of 16)	intron (NM_001293234, intron 8 of 16)	63693	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
112495	chr19	6457001	6457400	+	0	NA	intron (NM_024103, intron 3 of 9)	AluSx|SINE|Alu	2592	NM_024103	79085		NM_024103	ENSG00000125648	SLC25A23	APC2|MCSC2|SCAMC3|SCaMC-3	solute carrier family 25 member 23	protein-coding
148022	chr20	63116471	63116730	+	0	NA	Intergenic	Intergenic	-14281	NR_003245	768097		NR_003245	ENSG00000231133	HAR1B	HAR1R|LINC00065|NCRNA00065	highly accelerated region 1B	ncRNA
62226	chr13	98517301	98518250	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	4350	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
171910	chr4	832271	832880	+	0	NA	Intergenic	Intergenic	-6446	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
167423	chr3	129024251	129024350	+	0	NA	intron (NM_024768, intron 2 of 7)	AluSz|SINE|Alu	-20298	NM_001348521	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
196527	chr6	43813071	43813600	+	0	NA	Intergenic	L2b|LINE|L2	38998	NR_149142	285857		NR_149142	ENSG00000283215	LINC02537	-	long intergenic non-protein coding RNA 2537	ncRNA
184542	chr5	102681421	102681730	+	0	NA	Intergenic	Intergenic	-10111	NR_103754	285708		NR_103753	ENSG00000250682	LINC00491	-	long intergenic non-protein coding RNA 491	ncRNA
231298	chr9	130044851	130045980	+	0	NA	Intergenic	Intergenic	-2226	NM_001363755	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
130237	chr2	84832651	84833380	+	0	NA	intron (NM_001080824, intron 3 of 5)	intron (NM_001080824, intron 3 of 5)	48069	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
200239	chr6	131909271	131910190	+	0	NA	Intergenic	L1MB2|LINE|L1	41642	NM_001901	1490		NM_001901	ENSG00000118523	CCN2	CTGF|HCS24|IBP-8|IGFBP8|NOV2	cellular communication network factor 2	protein-coding
178980	chr4	163164821	163165380	+	0	NA	intron (NM_138386, intron 1 of 7)	L2|LINE|L2	1790	NM_001128931	92345		NM_138386	ENSG00000145414	NAF1	PFBMFT7	nuclear assembly factor 1 ribonucleoprotein	protein-coding
77152	chr15	79953871	79954100	+	0	NA	Intergenic	L2|LINE|L2	17211	NM_001114735	597		NM_004049	ENSG00000140379	BCL2A1	ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1	BCL2 related protein A1	protein-coding
9853	chr1	54276521	54276780	+	0	NA	intron (NM_145716, intron 5 of 17)	intron (NM_145716, intron 5 of 17)	40207	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
182322	chr5	59034471	59035200	+	0	NA	intron (NM_001364603, intron 7 of 15)	intron (NM_001364603, intron 7 of 15)	4641	NM_001197222	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
152688	chr22	21623751	21624530	+	0	NA	TTS (NM_001256356)	TTS (NM_001256356)	5882	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
186007	chr5	133936671	133936830	+	0	NA	Intergenic	Intergenic	23073	NR_131252	105664404		NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
32164	chr10	101521951	101522430	+	0	NA	intron (NM_033637, intron 5 of 14)	AluY|SINE|Alu	66067	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
104665	chr17	81489171	81489650	+	0	NA	Intergenic	L2a|LINE|L2	23389	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
213848	chr7	141985571	141985730	+	0	NA	Intergenic	L1PA3|LINE|L1	-10229	NM_001365693	8972		NM_004668	ENSG00000257335	MGAM	MG|MGA	maltase-glucoamylase	protein-coding
237352	chrX	118603771	118604180	+	0	NA	intron (NM_144658, intron 23 of 52)	intron (NM_144658, intron 23 of 52)	108066	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
21394	chr1	205275021	205276200	+	0	NA	Intergenic	Intergenic	18413	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
93100	chr17	17668071	17668530	+	0	NA	Intergenic	L2a|LINE|L2	9388	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
8074	chr1	38998101	38998300	+	0	NA	exon (NM_024595, exon 2 of 5)	exon (NM_024595, exon 2 of 5)	6924	NM_024595	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
64499	chr14	24331551	24333180	+	0	NA	intron (NM_001198592, intron 4 of 25).2	intron (NM_001198592, intron 4 of 25).2	2706	NM_139247	196883		NM_139247	ENSG00000129467	ADCY4	AC4	adenylate cyclase 4	protein-coding
42479	chr11	69910021	69910330	+	0	NA	Intergenic	Intergenic	-75732	NM_001378092	55107		NM_018043	ENSG00000131620	ANO1	DOG1|INDMS|MYMY7|ORAOV2|TAOS2|TMEM16A	anoctamin 1	protein-coding
93468	chr17	18786421	18786680	+	0	NA	intron (NM_001316919, intron 1 of 6)	intron (NM_001316919, intron 1 of 6)	-2485	NM_001316920	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
1660	chr1	3886451	3886750	+	0	NA	Intergenic	Intergenic	13672	NM_207356	339448		NM_207356	ENSG00000198912	C1orf174	-	chromosome 1 open reading frame 174	protein-coding
163083	chr3	50088401	50089730	+	0	NA	intron (NR_036627, intron 1 of 23)	CpG	146	NM_005778	10181		NM_005778	ENSG00000003756	RBM5	G15|H37|LUCA-15|LUCA15|RMB5	RNA binding motif protein 5	protein-coding
15311	chr1	149858851	149859280	+	0	NA	TTS (NR_168446).2	TTS (NR_168446).2	2094	NM_001034077	554313		NM_001034077	ENSG00000270276	H4C15	H4-16|H4/o|H4C1|H4C11|H4C12|H4C13|H4C14|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST2H4B	H4 clustered histone 15	protein-coding
60572	chr13	41652401	41653000	+	0	NA	intron (NM_015058, intron 37 of 44)	MIR3|SINE|MIR	-84305	NR_049803	100847026		NR_049803	ENSG00000284584	MIR5006	-	microRNA 5006	ncRNA
11319	chr1	89407321	89408350	+	0	NA	intron (NR_003133, intron 1 of 4)	intron (NR_003133, intron 1 of 4)	156	NR_003133	400759		NR_003133	ENSG00000290525	GBP1P1	LIMIT	guanylate binding protein 1 pseudogene 1	pseudo
223189	chr8	143565751	143566300	+	0	NA	TTS (NM_001100878).2	TTS (NM_001100878).2	6747	NM_001100878	642475		NM_001100878	ENSG00000204839	MROH6	C8orf73	maestro heat like repeat family member 6	protein-coding
215594	chr7	158973501	158974300	+	0	NA	Intergenic	CpG	-34454	NR_024394	154822		NM_198345	ENSG00000231419	LINC00689	STORM	long intergenic non-protein coding RNA 689	ncRNA
168732	chr3	150762401	150764200	+	0	NA	promoter-TSS (NM_005067)	promoter-TSS (NM_005067)	-131	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
187293	chr5	141593101	141593700	+	0	NA	intron (NM_005219, intron 1 of 27)	HAL1|LINE|L1	25600	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
104801	chr17	81739321	81739750	+	0	NA	Intergenic	AluJr|SINE|Alu	27251	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
222427	chr8	134691101	134691780	+	0	NA	intron (NM_001289394, intron 1 of 16)	intron (NM_001289394, intron 1 of 16)	5115	NM_001029939	57623		NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
118131	chr19	34904651	34904950	+	0	NA	promoter-TSS (NR_146451)	promoter-TSS (NR_146451)	-515	NR_146451	100652911		NR_146451	ENSG00000269037	LINC01838	-	long intergenic non-protein coding RNA 1838	ncRNA
57004	chr12	120577351	120577450	+	0	NA	3' UTR (NM_014868, exon 17 of 17)	3' UTR (NM_014868, exon 17 of 17)	3998	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
230301	chr9	127949501	127950300	+	0	NA	intron (NM_203305, intron 1 of 7)	intron (NM_203305, intron 1 of 7)	814	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
166074	chr3	108845951	108846050	+	0	NA	intron (NM_001317747, intron 2 of 4)	intron (NM_001317747, intron 2 of 4)	23214	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
179324	chr4	181414371	181414680	+	0	NA	Intergenic	L1PA2|LINE|L1	-149496	NR_149139	101928679		NR_149139		LINC02500	-	long intergenic non-protein coding RNA 2500	ncRNA
40882	chr11	65119451	65119550	+	0	NA	Intergenic	AluSc|SINE|Alu	-1799	NM_014205	741		NM_014205	ENSG00000174276	ZNHIT2	C11orf5|FON	zinc finger HIT-type containing 2	protein-coding
123566	chr19	54446301	54446900	+	0	NA	intron (NR_126418, intron 2 of 2)	AluSx|SINE|Alu	2438	NR_126418	104355426		NR_126418	ENSG00000226696	LENG8-AS1	-	LENG8 antisense RNA 1	ncRNA
138366	chr2	203948171	203948330	+	0	NA	intron (NM_012092, intron 1 of 4)	intron (NM_012092, intron 1 of 4)	11487	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
5587	chr1	26017021	26017630	+	0	NA	Intergenic	Intergenic	-4450	NM_004455	2134		NM_004455	ENSG00000158008	EXTL1	EXTL	exostosin like glycosyltransferase 1	protein-coding
27259	chr10	29703971	29704130	+	0	NA	intron (NM_001323599, intron 1 of 38)	AluJo|SINE|Alu	31751	NM_003174	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
211869	chr7	111024901	111025700	+	0	NA	intron (NM_032549, intron 3 of 5)	MIRb|SINE|MIR	-65706	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
230034	chr9	127247301	127247500	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-16262	NM_001286779	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
225829	chr9	37913351	37914330	+	0	NA	Intergenic	Intergenic	-9487	NR_024872	92014		NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
76698	chr15	75758151	75759050	+	0	NA	Intergenic	Intergenic	3715	NR_036198	100423035		NR_036198	ENSG00000284385	MIR4313	-	microRNA 4313	ncRNA
185730	chr5	132072351	132072650	+	0	NA	Intergenic	Intergenic	-1289	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
173787	chr4	17612871	17613030	+	0	NA	Intergenic	L2a|LINE|L2	-1691	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
19910	chr1	184110471	184111430	+	0	NA	Intergenic	Intergenic	59220	NR_125335	116461		NM_052965	ENSG00000198860	TSEN15	C1orf19|PCH2F|sen15	tRNA splicing endonuclease subunit 15	protein-coding
95345	chr17	35801521	35802180	+	0	NA	Intergenic	Intergenic	-6209	NR_111988	79148		NM_024302	ENSG00000271447	MMP28	EPILYSIN|MM28|MMP-25|MMP-28|MMP25	matrix metallopeptidase 28	protein-coding
236694	chrX	77777821	77778700	+	0	NA	intron (NM_138270, intron 1 of 33)	AluJo|SINE|Alu	7956	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
134161	chr2	134244051	134244350	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-9872	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
114336	chr19	12155271	12155630	+	0	NA	intron (NM_145233, intron 1 of 3)	MER4D|LTR|ERV1	1281	NR_037802	100529855		NR_037802		ZNF625-ZNF20	-	ZNF625-ZNF20 readthrough (NMD candidate)	ncRNA
155530	chr22	38700031	38701950	+	0	NA	promoter-TSS (NM_001360236)	promoter-TSS (NM_001360236)	-47	NM_014876	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
88136	chr16	81621701	81622000	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	10502	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
128916	chr2	64298201	64298400	+	0	NA	Intergenic	Intergenic	-42459	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
124056	chr19	55590701	55590900	+	0	NA	TTS (NM_032836)	TTS (NM_032836)	8717	NM_032836	84922		NM_032836	ENSG00000179943	FIZ1	ZNF798	FLT3 interacting zinc finger 1	protein-coding
10437	chr1	66243701	66244250	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-88133	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
54940	chr12	96226101	96226500	+	0	NA	intron (NM_005230, intron 2 of 4)	intron (NM_005230, intron 2 of 4)	-29198	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
49043	chr12	14386971	14387650	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	2029	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
97090	chr17	42414401	42415400	+	0	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	8356	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
211735	chr7	107166901	107167100	+	0	NA	Intergenic	Intergenic	-1961	NM_001244262	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
5885	chr1	26786901	26788700	+	0	NA	promoter-TSS (NM_001374482)	promoter-TSS (NM_001374482)	-150	NM_017837	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
163389	chr3	50500201	50500630	+	0	NA	intron (NM_001291101, intron 1 of 37)	intron (NM_001291101, intron 1 of 37)	3219	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
137603	chr2	197291771	197292030	+	0	NA	intron (NR_046837, intron 5 of 5)	L1PA6|LINE|L1	10619	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
34113	chr10	126388201	126388400	+	0	NA	5' UTR (NM_001288973, exon 1 of 23)	5' UTR (NM_001288973, exon 1 of 23)	177	NM_021641	8038		NM_003474	ENSG00000148848	ADAM12	ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA	ADAM metallopeptidase domain 12	protein-coding
14055	chr1	120773801	120774530	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-31391	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
194753	chr6	33914501	33915530	+	0	NA	Intergenic	Intergenic	15880	NR_106982	102466816		NR_106982	ENSG00000276824	MIR7159	hsa-mir-7159	microRNA 7159	ncRNA
138398	chr2	204692051	204692230	+	0	NA	intron (NM_205863, intron 2 of 21)	intron (NM_205863, intron 2 of 21)	146665	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
209403	chr7	76328421	76328680	+	0	NA	3' UTR (NM_012479, exon 2 of 2)	3' UTR (NM_012479, exon 2 of 2)	25877	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
123598	chr19	54477071	54477650	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4064	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
130010	chr2	74173821	74174380	+	0	NA	intron (NM_001317112, intron 1 of 4)	AluSc|SINE|Alu	4214	NM_001317111	55233		NM_018221	ENSG00000114978	MOB1A	C2orf6|MABKL1B|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B	MOB kinase activator 1A	protein-coding
92293	chr17	8093571	8094430	+	0	NA	Intergenic	Intergenic	5944	NR_036201	100422983		NR_036201	ENSG00000264005	MIR4314	-	microRNA 4314	ncRNA
23087	chr1	226656521	226657200	+	0	NA	non-coding (NR_103784, exon 2 of 2)	non-coding (NR_103784, exon 2 of 2)	18208	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
111107	chr19	3207171	3208100	+	0	NA	exon (NM_001321463, exon 15 of 15)	exon (NM_001321463, exon 15 of 15)	-17026	NM_021938	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
230978	chr9	129479451	129479950	+	0	NA	Intergenic	Intergenic	-8960	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
145531	chr20	44131301	44131500	+	0	NA	intron (NM_020433, intron 2 of 5)	MLT1F2|LTR|ERVL-MaLR	55788	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
571	chr1	1267301	1267500	+	0	NA	intron (NM_194315, intron 2 of 7)	intron (NM_194315, intron 2 of 7)	6454	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
16683	chr1	155196101	155196630	+	0	NA	intron (NM_007112, intron 21 of 22)	intron (NM_007112, intron 21 of 22)	1188	NR_030281	693235		NR_030281	ENSG00000284586	MIR92B	MIRN92B|hsa-mir-92b|mir-92b	microRNA 92b	ncRNA
145816	chr20	45469621	45469880	+	0	NA	promoter-TSS (NM_006103)	promoter-TSS (NM_006103)	-3	NM_006103	10406		NM_006103	ENSG00000101443	WFDC2	EDDM4|HE4|WAP5|dJ461P17.6	WAP four-disulfide core domain 2	protein-coding
7464	chr1	33096401	33096830	+	0	NA	intron (NM_001376724, intron 6 of 9)	intron (NM_001376724, intron 6 of 9)	14437	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
121986	chr19	48506021	48507000	+	0	NA	intron (NM_001080434, intron 6 of 15)	intron (NM_001080434, intron 6 of 15)	6679	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
137953	chr2	201135421	201136080	+	0	NA	intron (NR_147241, intron 2 of 4)	AluJo|SINE|Alu	2969	NM_001202518	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
166938	chr3	125141271	125142830	+	0	NA	intron (NM_024628, intron 5 of 13)	CpG	9502	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
193233	chr6	29892851	29893550	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	5627	NR_001434	3136		NR_001434		HLA-H	HLAHP	major histocompatibility complex, class I, H (pseudogene)	pseudo
97065	chr17	42377501	42377700	+	0	NA	intron (NM_001369516, intron 1 of 23)	intron (NM_001369516, intron 1 of 23)	10842	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
110499	chr19	2047801	2048400	+	0	NA	intron (NM_199054, intron 2 of 13)	intron (NM_199054, intron 2 of 13)	3144	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
150419	chr21	42405351	42405900	+	0	NA	intron (NM_001243467, intron 1 of 11)	intron (NM_001243467, intron 1 of 11)	1723	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
137704	chr2	197497951	197498330	+	0	NA	intron (NM_199440, intron 2 of 11)	L1MB3|LINE|L1	1700	NM_002156	3329		NM_002156	ENSG00000144381	HSPD1	CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13	heat shock protein family D (Hsp60) member 1	protein-coding
79167	chr16	288451	288750	+	0	NA	intron (NM_181050, intron 9 of 9)	intron (NM_181050, intron 9 of 9)	5436	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
22048	chr1	210726601	210726800	+	0	NA	intron (NM_172362, intron 10 of 10)	intron (NM_172362, intron 10 of 10)	397334	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
220728	chr8	102099321	102099580	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	24884	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
37899	chr11	34064751	34065300	+	0	NA	intron (NM_203364, intron 2 of 17)	AluY|SINE|Alu	13294	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
53194	chr12	62192321	62192890	+	0	NA	5' UTR (NM_178539, exon 1 of 5)	5' UTR (NM_178539, exon 1 of 5)	234	NM_178539	338811		NM_178539	ENSG00000198673	TAFA2	FAM19A2|TAFA-2	TAFA chemokine like family member 2	protein-coding
50040	chr12	43957771	43958000	+	0	NA	intron (NM_001286212, intron 3 of 6)	intron (NM_001286212, intron 3 of 6)	121804	NM_032256	84216		NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
67347	chr14	69674371	69674530	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	62854	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
196370	chr6	43245121	43245380	+	0	NA	intron (NM_032538, intron 1 of 14)	intron (NM_032538, intron 1 of 14)	1769	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
125844	chr2	24418401	24418600	+	0	NA	Intergenic	LTR78|LTR|ERV1	-57964	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
236793	chrX	79145971	79146130	+	0	NA	intron (NM_032553, intron 1 of 2)	intron (NM_032553, intron 1 of 2)	1362	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
80513	chr16	2749701	2750430	+	0	NA	intron (NR_027275, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	2535	NR_027275	100128788		NR_027274	ENSG00000205913	SRRM2-AS1	-	SRRM2 antisense RNA 1	ncRNA
196845	chr6	47414731	47415380	+	0	NA	Intergenic	Intergenic	-62734	NM_012120	23607		NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
194904	chr6	34698871	34699030	+	0	NA	Intergenic	AluJb|SINE|Alu	2005	NR_134626	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
202235	chr6	156827871	156828030	+	0	NA	intron (NM_001371656, intron 2 of 20)	AluSz|SINE|Alu	-48219	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
231266	chr9	130006121	130006580	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluSz|SINE|Alu	36839	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
72340	chr15	31324101	31324500	+	0	NA	Intergenic	HAL1|LINE|L1	-2535	NM_001302461	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
10955	chr1	84175851	84176150	+	0	NA	intron (NM_001300915, intron 4 of 11)	intron (NM_001300915, intron 4 of 11)	-5632	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
75263	chr15	64991151	64991530	+	0	NA	Intergenic	AluJo|SINE|Alu	-1426	NM_001127890	51324		NM_016630	ENSG00000090487	SPG21	ABHD21|ACP33|BM-019|GL010|MAST	SPG21 abhydrolase domain containing, maspardin	protein-coding
65067	chr14	39407401	39407600	+	0	NA	intron (NM_203301, intron 1 of 3)	L1MB1|LINE|L1	25000	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
148944	chr21	10145621	10145700	+	0	NA	Intergenic	(CCTCCCA)n|Simple_repeat|Simple_repeat	-267837	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
176677	chr4	100539771	100539930	+	0	NA	Intergenic	L2b|LINE|L2	-21828	NM_016242	51705		NM_016242	ENSG00000164035	EMCN	EMCN2|MUC14	endomucin	protein-coding
154742	chr22	36478101	36478450	+	0	NA	intron (NM_012473, intron 2 of 3)	L2b|LINE|L2	3365	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
194654	chr6	33619871	33622200	+	0	NA	promoter-TSS (NM_002224)	promoter-TSS (NM_002224)	-287	NM_002224	3710		NM_002224	ENSG00000096433	ITPR3	CMT1J|IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding
173619	chr4	11470551	11470930	+	0	NA	Intergenic	Intergenic	-41846	NM_005114	9957		NM_005114	ENSG00000002587	HS3ST1	3OST|3OST1	heparan sulfate-glucosamine 3-sulfotransferase 1	protein-coding
35540	chr11	1589001	1589950	+	0	NA	intron (NR_021489, intron 1 of 1).3	L1MEd|LINE|L1	-4192	NM_001005922	387264		NM_001005922	ENSG00000205869	KRTAP5-1	KRN1L|KRTAP5.1	keratin associated protein 5-1	protein-coding
28185	chr10	44316451	44316850	+	0	NA	Intergenic	Intergenic	23900	NR_164139	100130539		NM_001258000	ENSG00000277288	LINC02881	C10orf142	long intergenic non-protein coding RNA 2881	ncRNA
2971	chr1	11949171	11949330	+	0	NA	intron (NM_001316320, intron 3 of 19)	MLT1K|LTR|ERVL-MaLR	14533	NM_001316320	5351		NM_000302	ENSG00000083444	PLOD1	EDS6|EDSKCL1|LH|LH1|LLH|PLOD	procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	protein-coding
191995	chr6	16252721	16253180	+	0	NA	intron (NM_006877, intron 3 of 8)	intron (NM_006877, intron 3 of 8)	14363	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
86742	chr16	67642721	67642980	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2294	NM_001317026	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
70810	chr14	103548701	103549100	+	0	NA	Intergenic	L2a|LINE|L2	13420	NM_001015049	9529		NM_004873	ENSG00000166170	BAG5	BAG-5|CMD2F	BAG cochaperone 5	protein-coding
216807	chr8	22559901	22560100	+	0	NA	intron (NM_005775, intron 5 of 20)	AluSx|SINE|Alu	-5729	NM_001018003	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
49121	chr12	14805251	14805730	+	0	NA	3' UTR (NM_001013698, exon 2 of 2)	3' UTR (NM_001013698, exon 2 of 2)	1820	NM_175874	144608		NM_175874	ENSG00000182993	C12orf60	-	chromosome 12 open reading frame 60	protein-coding
74531	chr15	60485371	60486130	+	0	NA	intron (NR_120341, intron 1 of 4)	intron (NR_120341, intron 1 of 4)	6572	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
10602	chr1	67532321	67532630	+	0	NA	Intergenic	MIRb|SINE|MIR	-102073	NM_001018069	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
133820	chr2	127855451	127855750	+	0	NA	intron (NM_004805, intron 1 of 3)	intron (NM_004805, intron 1 of 3)	2555	NM_004805	5433		NM_004805	ENSG00000144231	POLR2D	HSRBP4|HSRPB4|RBP4|RPB16|RPB4	RNA polymerase II subunit D	protein-coding
237396	chrX	119564851	119565650	+	0	NA	exon (NM_022101, exon 1 of 7)	exon (NM_022101, exon 1 of 7)	159	NM_022101	63932		NM_022101	ENSG00000018610	STEEP1	CXorf56|MRX107|STEEP|XLID107	STING1 ER exit protein 1	protein-coding
26113	chr10	13382801	13383000	+	0	NA	Intergenic	Intergenic	-34602	NM_001195602	22929		NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
53689	chr12	68482601	68483100	+	0	NA	Intergenic	Intergenic	-31366	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
23977	chr1	235200921	235201180	+	0	NA	intron (NM_031371, intron 16 of 22)	AluSx3|SINE|Alu	-10934	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
183048	chr5	73419351	73420080	+	0	NA	Intergenic	CpG	29062	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
38443	chr11	45278701	45278900	+	0	NA	intron (NM_001247987, intron 1 of 7)	intron (NM_001247987, intron 1 of 7)	7541	NM_001247987	57586		NM_020826	ENSG00000019505	SYT13	-	synaptotagmin 13	protein-coding
49828	chr12	32139851	32140100	+	0	NA	intron (NR_148725, intron 1 of 9)	intron (NR_148725, intron 1 of 9)	33128	NR_148725	636		NM_001714	ENSG00000151746	BICD1	BICD|bic-D 1	BICD cargo adaptor 1	protein-coding
224124	chr9	4670551	4670850	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	-4220	NR_148444	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
127070	chr2	37456151	37456930	+	0	NA	Intergenic	Intergenic	111910	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
135180	chr2	157900951	157901480	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-24885	NM_001111067	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
92996	chr17	17178001	17178200	+	0	NA	intron (NM_015134, intron 21 of 22)	AluJb|SINE|Alu	28233	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
227918	chr9	94180071	94180400	+	0	NA	intron (NR_160773, intron 2 of 2)	AluSx1|SINE|Alu	1401	NR_029481	406886		NR_029481	ENSG00000199133	MIRLET7D	LET7D|MIRNLET7D|hsa-let-7d|let-7d	microRNA let-7d	ncRNA
157889	chr22	49750821	49751080	+	0	NA	Intergenic	CpG	73381	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
71483	chr14	105974771	105975250	+	0	NA	Intergenic	Intergenic	-2741	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
235686	chrX	48695201	48695430	+	0	NA	promoter-TSS (NM_001282166)	promoter-TSS (NM_001282166)	-239	NM_001282166	6839		NM_003173	ENSG00000101945	SUV39H1	H3-K9-HMTase 1|KMT1A|MG44|SUV39H	SUV39H1 histone lysine methyltransferase	protein-coding
22781	chr1	224422521	224423000	+	0	NA	intron (NM_001115113, intron 4 of 13)	L2b|LINE|L2	-11880	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
144639	chr20	35951851	35952280	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	2437	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
88729	chr16	86029551	86029650	+	0	NA	Intergenic	Intergenic	111253	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
105716	chr18	2702671	2702830	+	0	NA	intron (NM_015295, intron 12 of 47)	intron (NM_015295, intron 12 of 47)	47024	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
18774	chr1	167512471	167513030	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	5779	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
194020	chr6	31820201	31820650	+	0	NA	Intergenic	AluSg4|SINE|Alu	4882	NM_005345	3303		NM_005345	ENSG00000204389	HSPA1A	HEL-S-103|HSP70|HSP70-1|HSP70-1A|HSP70-2|HSP70.1|HSP70.2|HSP70I|HSP72|HSPA1	heat shock protein family A (Hsp70) member 1A	protein-coding
209265	chr7	75902121	75902380	+	0	NA	Intergenic	AluJr|SINE|Alu	-12905	NM_001382658	5447		NM_000941	ENSG00000127948	POR	CPR|CYPOR|P450R	cytochrome p450 oxidoreductase	protein-coding
86308	chr16	58733601	58734750	+	0	NA	exon (NM_002080, exon 1 of 10)	exon (NM_002080, exon 1 of 10)	141	NM_001286220	2806		NM_002080	ENSG00000125166	GOT2	DEE82|KAT4|KATIV|KYAT4|mitAAT	glutamic-oxaloacetic transaminase 2	protein-coding
147505	chr20	59176171	59176330	+	0	NA	intron (NM_178457, intron 1 of 5)	L1ME1|LINE|L1	12429	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
151239	chr21	45285101	45285450	+	0	NA	TTS (NR_148026)	TTS (NR_148026)	2620	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
236085	chrX	56774501	56775080	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-37206	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
18615	chr1	165845901	165846300	+	0	NA	intron (NM_012474, intron 1 of 6)	AluJr4|SINE|Alu	18486	NM_012474	7371		NM_012474	ENSG00000143179	UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
223291	chr8	143760871	143761230	+	0	NA	promoter-TSS (NR_136279).2	promoter-TSS (NR_136279).2	-542	NR_136279	105375800		NR_136279		LOC105375800	-	SREBF pathway regulator in golgi 1 pseudogene	pseudo
4688	chr1	22976421	22976780	+	0	NA	Intergenic	Intergenic	-3734	NM_001289974	646262		NM_001289974	ENSG00000215906	LACTBL1	-	lactamase beta like 1	protein-coding
181069	chr5	36689751	36690600	+	0	NA	Intergenic	CpG	83569	NM_004172	6507		NM_004172	ENSG00000079215	SLC1A3	EA6|EAAT1|GLAST|GLAST1	solute carrier family 1 member 3	protein-coding
79855	chr16	1474371	1476130	+	0	NA	promoter-TSS (NM_001287)	promoter-TSS (NM_001287)	-166	NM_001114331	1186		NM_001287	ENSG00000103249	CLCN7	CLC-7|CLC7|HOD|OPTA2|OPTB4|PPP1R63	chloride voltage-gated channel 7	protein-coding
58248	chr12	128793421	128793680	+	0	NA	3' UTR (NM_145648, exon 8 of 8)	3' UTR (NM_145648, exon 8 of 8)	30408	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
45404	chr11	118345501	118345980	+	0	NA	intron (NM_000073, intron 1 of 6)	intron (NM_000073, intron 1 of 6)	1396	NM_000073	917		NM_000073	ENSG00000160654	CD3G	CD3-GAMMA|CD3GAMMA|IMD17|T3G	CD3 gamma subunit of T-cell receptor complex	protein-coding
5306	chr1	25217871	25218550	+	0	NA	Intergenic	Intergenic	14292	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
8342	chr1	40187851	40188150	+	0	NA	intron (NM_012421, intron 1 of 7)	intron (NM_012421, intron 1 of 7)	26613	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
22992	chr1	226105571	226106030	+	0	NA	Intergenic	AluSz6|SINE|Alu	22225	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
184500	chr5	100877451	100877550	+	0	NA	intron (NM_005668, intron 3 of 4)	intron (NM_005668, intron 3 of 4)	25782	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
229828	chr9	125747901	125749350	+	0	NA	intron (NR_024122, intron 2 of 7)	intron (NR_024122, intron 2 of 7)	442	NM_001134778	5090		NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
6657	chr1	29068851	29068950	+	0	NA	intron (NM_001376016, intron 17 of 17)	intron (NM_001376016, intron 17 of 17)	53601	NM_001171868	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
22823	chr1	225156301	225156500	+	0	NA	intron (NM_001367479, intron 34 of 85)	MLT1D|LTR|ERVL-MaLR	226725	NM_001367479	127602		NM_001373	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein axonemal heavy chain 14	protein-coding
75966	chr15	70489301	70490050	+	0	NA	Intergenic	Intergenic	16253	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
192279	chr6	20415921	20416850	+	0	NA	intron (NM_001243076, intron 1 of 6)	L2a|LINE|L2	12706	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
64318	chr14	23581101	23581450	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2485	NM_032452	84502		NM_032452	ENSG00000092051	JPH4	JP4|JPHL1	junctophilin 4	protein-coding
181363	chr5	40530301	40530500	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-149515	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
201419	chr6	146785021	146785280	+	0	NA	intron (NM_024694, intron 31 of 35)	intron (NM_024694, intron 31 of 35)	18674	NR_003954	729176		NR_003954		KATNBL1P6	-	katanin regulatory subunit B1 like 1 pseudogene 6	pseudo
124149	chr19	55809451	55809650	+	0	NA	exon (NM_001297743, exon 4 of 11)	exon (NM_001297743, exon 4 of 11)	-26990	NM_134444	147945		NM_134444	ENSG00000160505	NLRP4	CLR19.5|CT58|NALP4|PAN2|PYPAF4|RNH2	NLR family pyrin domain containing 4	protein-coding
131417	chr2	96284271	96284830	+	0	NA	exon (NM_014014, exon 31 of 45)	exon (NM_014014, exon 31 of 45)	18325	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
83760	chr16	28710171	28710530	+	0	NA	intron (NM_001199142, intron 1 of 20)	L1ME3Cz|LINE|L1	-1067	NM_001037808	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
3209	chr1	13759121	13759650	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	9970	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
198741	chr6	108557271	108559000	+	0	NA	Intergenic	CpG	-1690	NM_201559	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
62892	chr13	110727751	110728160	+	0	NA	Intergenic	AluSc8|SINE|Alu	12518	NM_001267728	3621		NM_005537	ENSG00000153487	ING1	p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a	inhibitor of growth family member 1	protein-coding
44872	chr11	114215721	114216300	+	0	NA	intron (NM_001354751, intron 4 of 6)	intron (NM_001354751, intron 4 of 6)	-41796	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
98641	chr17	47815951	47816050	+	0	NA	intron (NM_145798, intron 12 of 22)	intron (NM_145798, intron 12 of 22)	5794	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
62923	chr13	111175371	111175530	+	0	NA	intron (NM_001354057, intron 3 of 18)	intron (NM_001354057, intron 3 of 18)	-11344	NM_001113513	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
154700	chr22	36403521	36403980	+	0	NA	Intergenic	L1MB5|LINE|L1	-15783	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
144701	chr20	36468451	36468630	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	6745	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
208489	chr7	67300271	67300630	+	0	NA	intron (NR_022007, intron 1 of 4)	intron (NR_022007, intron 1 of 4)	1992	NR_046297	5382		NR_022007	ENSG00000291154	PMS2P4	PMS2L4|PMS6	PMS1 homolog 2, mismatch repair system component pseudogene 4	pseudo
119184	chr19	39424251	39425250	+	0	NA	exon (NM_001351693, exon 19 of 20)	exon (NM_001351693, exon 19 of 20)	10971	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
138487	chr2	207113551	207113650	+	0	NA	intron (NR_073108, intron 3 of 4)	intron (NR_073108, intron 3 of 4)	-3527	NR_036227	100423036		NR_036227	ENSG00000253008	MIR2355	mir-2355	microRNA 2355	ncRNA
106206	chr18	11655271	11655530	+	0	NA	promoter-TSS (NR_106975)	promoter-TSS (NR_106975)	-459	NR_106975	102465690		NR_106975	ENSG00000283492	MIR7153	hsa-mir-7153|mir-7153	microRNA 7153	ncRNA
15754	chr1	151145401	151146080	+	0	NA	intron (NM_001178061, intron 1 of 19)	CpG	891	NM_030913	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
89323	chr16	88735471	88735630	+	0	NA	intron (NM_001142864, intron 12 of 50)	intron (NM_001142864, intron 12 of 50)	4370	NR_103774	100289580		NM_207451		HSALR1	-	HSP90AB1 associated lncRNA 1	ncRNA
124092	chr19	55640701	55641400	+	0	NA	promoter-TSS (NM_207115)	promoter-TSS (NM_207115)	48	NM_207115	51157		NM_016202	ENSG00000213015	ZNF580	-	zinc finger protein 580	protein-coding
83795	chr16	28803601	28804800	+	0	NA	Intergenic	Intergenic	-18848	NM_148414	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
89475	chr16	89099901	89100830	+	0	NA	intron (NR_147928, intron 2 of 11)	intron (NR_147928, intron 2 of 11)	6513	NM_001284316	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
42548	chr11	71710221	71711480	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	103009	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
7140	chr1	32208171	32208330	+	0	NA	promoter-TSS (NM_001099434)	promoter-TSS (NM_001099434)	-844	NM_001099434	149069		NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
190275	chr5	179548551	179549150	+	0	NA	intron (NM_001305388, intron 3 of 5)	intron (NM_001305388, intron 3 of 5)	-1704	NM_025158	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
64582	chr14	24710301	24710830	+	0	NA	Intergenic	Intergenic	-76375	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
162544	chr3	48636701	48636900	+	0	NA	3' UTR (NM_001407, exon 35 of 35)	3' UTR (NM_001407, exon 35 of 35)	-1339	NM_001281733	65010		NM_022911	ENSG00000225697	SLC26A6	-	solute carrier family 26 member 6	protein-coding
237368	chrX	118992501	118992990	+	0	NA	intron (NM_001031855, intron 5 of 10)	L1PB1|LINE|L1	16413	NM_001289109	79836		NM_024778	ENSG00000175556	LONRF3	RNF127	LON peptidase N-terminal domain and ring finger 3	protein-coding
93931	chr17	21302971	21303330	+	0	NA	intron (NM_145109, intron 6 of 11)	intron (NM_145109, intron 6 of 11)	15114	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
12133	chr1	100070651	100070950	+	0	NA	intron (NM_033055, intron 8 of 11)	intron (NM_033055, intron 8 of 11)	32705	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
128877	chr2	64090051	64090700	+	0	NA	Intergenic	L2a|LINE|L2	54045	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
105133	chr17	82231801	82232400	+	0	NA	promoter-TSS (NM_001042423)	promoter-TSS (NM_001042423)	-132	NM_001042423	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
163795	chr3	52401421	52401680	+	0	NA	3' UTR (NM_004656, exon 17 of 17)	3' UTR (NM_004656, exon 17 of 17)	8458	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
23624	chr1	230274071	230274500	+	0	NA	intron (NM_001291866, intron 14 of 15)	intron (NM_001291866, intron 14 of 15)	152047	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
11105	chr1	86097451	86097550	+	0	NA	intron (NR_146342, intron 5 of 60)	(TCT)n|Simple_repeat|Simple_repeat	58971	NR_146344	255631		NM_152890	ENSG00000171502	COL24A1	-	collagen type XXIV alpha 1 chain	protein-coding
46803	chr11	130278421	130278680	+	0	NA	intron (NR_163264, intron 1 of 10)	L1MB8|LINE|L1	36162	NM_001301099	29068		NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
73886	chr15	50427101	50427300	+	0	NA	intron (NM_001128610, intron 1 of 19)	AluSc|SINE|Alu	2795	NM_005154	9101		NM_005154	ENSG00000138592	USP8	HumORF8|PITA4|SPG59|UBPY	ubiquitin specific peptidase 8	protein-coding
33519	chr10	119208951	119209800	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	1804	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
116169	chr19	17406551	17406650	+	0	NA	promoter-TSS (NM_004335)	promoter-TSS (NM_004335)	859	NM_001304547	93343		NM_138401	ENSG00000141971	MVB12A	CFBP|FAM125A	multivesicular body subunit 12A	protein-coding
43587	chr11	83117051	83117900	+	0	NA	Intergenic	Intergenic	-39656	NM_001346414	51585		NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding
145977	chr20	46352671	46353030	+	0	NA	intron (NM_173179, intron 7 of 9)	intron (NM_173179, intron 7 of 9)	11575	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
147164	chr20	56440601	56441400	+	0	NA	intron (NM_020356, intron 2 of 5)	AluSx1|SINE|Alu	-27585	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
131591	chr2	96864301	96865300	+	0	NA	exon (NM_017789, exon 9 of 15)	exon (NM_017789, exon 9 of 15)	5280	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
29543	chr10	71213401	71213750	+	0	NA	intron (NM_170744, intron 1 of 16)	CpG	1005	NM_001244889	219699		NM_170744	ENSG00000107731	UNC5B	UNC5H2|p53RDL1	unc-5 netrin receptor B	protein-coding
216586	chr8	22023921	22025280	+	0	NA	promoter-TSS (NM_001286681)	promoter-TSS (NM_001286681)	-243	NM_001286681	10361		NM_182795	ENSG00000158806	NPM2	-	nucleophosmin/nucleoplasmin 2	protein-coding
164324	chr3	57760521	57761330	+	0	NA	intron (NR_165328, intron 2 of 22)	AluSp|SINE|Alu	3669	NM_001304421	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
63877	chr14	21749571	21749730	+	0	NA	Intergenic	Intergenic	-78633	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
11498	chr1	90840221	90840800	+	0	NA	intron (NR_147931, intron 1 of 2)	intron (NR_147931, intron 1 of 2)	-4349	NR_147932	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
114888	chr19	13889721	13890180	+	0	NA	exon (NM_001345843, exon 6 of 9)	exon (NM_001345843, exon 6 of 9)	12701	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
224999	chr9	33118351	33119130	+	0	NA	intron (NM_001378495, intron 3 of 5)	intron (NM_001378495, intron 3 of 5)	10048	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
199057	chr6	111532851	111533380	+	0	NA	intron (NR_034109, intron 1 of 1)	L3|LINE|CR1	34164	NM_001164283	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
113523	chr19	10117201	10118200	+	0	NA	intron (NM_003755, intron 5 of 10)	intron (NM_003755, intron 5 of 10)	2199	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
98010	chr17	45320171	45320580	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3355	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
155945	chr22	39682251	39682550	+	0	NA	intron (NM_001003406, intron 33 of 35)	intron (NM_001003406, intron 33 of 35)	111647	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
205364	chr7	13862251	13862350	+	0	NA	Intergenic	AluY|SINE|Alu	124214	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
206836	chr7	37339951	37340250	+	0	NA	intron (NM_014800, intron 2 of 21)	L1MC4|LINE|L1	13568	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
192246	chr6	20204571	20204980	+	0	NA	intron (NM_001080480, intron 1 of 12)	intron (NM_001080480, intron 1 of 12)	7694	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
222647	chr8	141152171	141153330	+	0	NA	intron (NM_014957, intron 7 of 22)	L1MB7|LINE|L1	24161	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
166154	chr3	111593051	111593350	+	0	NA	3' UTR (NM_024508, exon 2 of 2)	3' UTR (NM_024508, exon 2 of 2)	2146	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
109709	chr19	1064801	1065650	+	0	NA	promoter-TSS (NM_001258328)	promoter-TSS (NM_001258328)	-734	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
182889	chr5	70051171	70051330	+	0	NA	intron (NM_022874, intron 1 of 7)	FRAM|SINE|Alu	1581	NM_000344	6606		NM_000344	ENSG00000172062	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
55302	chr12	103505321	103505830	+	0	NA	Intergenic	Intergenic	9535	NR_135004	105369945		NR_135004		LOC105369945	-	uncharacterized LOC105369945	ncRNA
104538	chr17	81285171	81286350	+	0	NA	intron (NM_001037984, intron 2 of 15)	intron (NM_001037984, intron 2 of 15)	9547	NM_001037984	124565		NM_138570	ENSG00000157637	SLC38A10	PP1744|SNAT10	solute carrier family 38 member 10	protein-coding
41524	chr11	66270551	66271000	+	0	NA	intron (NM_030981, intron 1 of 5)	intron (NM_030981, intron 1 of 5)	2136	NM_030981	81876		NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
220991	chr8	115564371	115564530	+	0	NA	intron (NM_001282903, intron 5 of 6)	intron (NM_001282903, intron 5 of 6)	103563	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
206511	chr7	33738321	33738780	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	12569	NR_165282	55025		NM_017937	ENSG00000173862	FLJ20712	-	uncharacterized FLJ20712	ncRNA
156090	chr22	40058021	40059050	+	0	NA	intron (NM_001024843, intron 1 of 23)	Tigger11a|DNA|TcMar-Tigger	13718	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
116010	chr19	17123271	17123630	+	0	NA	intron (NM_004145, intron 2 of 39)	(TG)n|Simple_repeat|Simple_repeat	31215	NR_145784	109623483		NR_145784		SNORA118	-	small nucleolar RNA, H/ACA box 118	snoRNA
56190	chr12	111440501	111441050	+	0	NA	intron (NM_001291424, intron 1 of 6)	intron (NM_001291424, intron 1 of 6)	5913	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
51979	chr12	53951621	53951950	+	0	NA	Intergenic	CpG	-3118	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
80878	chr16	3613601	3614130	+	0	NA	Intergenic	AluSq|SINE|Alu	-2259	NM_032444	84464		NM_032444	ENSG00000188827	SLX4	BTBD12|FANCP|MUS312	SLX4 structure-specific endonuclease subunit	protein-coding
55971	chr12	110100021	110100780	+	0	NA	Intergenic	Intergenic	-23957	NM_031473	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
102372	chr17	75531171	75531330	+	0	NA	intron (NM_004524, intron 1 of 24)	intron (NM_004524, intron 1 of 24)	5548	NM_001015002	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
167744	chr3	131977401	131977600	+	0	NA	intron (NM_153429, intron 2 of 16)	intron (NM_153429, intron 2 of 16)	8431	NR_049890	100847040		NR_049890	ENSG00000265859	MIR5704	-	microRNA 5704	ncRNA
216978	chr8	23068221	23069630	+	0	NA	non-coding (NR_027140, exon 1 of 9)	non-coding (NR_027140, exon 1 of 9)	106	NM_147187	8795		NM_003842	ENSG00000120889	TNFRSF10B	CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9	TNF receptor superfamily member 10b	protein-coding
133571	chr2	121528771	121529130	+	0	NA	intron (NM_001142274, intron 3 of 37)	intron (NM_001142274, intron 3 of 37)	-1930	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
50733	chr12	48984951	48985650	+	0	NA	Intergenic	Intergenic	6978	NM_005430	7471		NM_005430	ENSG00000125084	WNT1	BMND16|INT1|OI15	Wnt family member 1	protein-coding
128371	chr2	55013701	55014300	+	0	NA	intron (NM_153828, intron 1 of 6)	intron (NM_153828, intron 1 of 6)	-3728	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
21687	chr1	206722721	206723180	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	38045	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
126702	chr2	30160071	30160750	+	0	NA	3' UTR (NM_001127399, exon 4 of 4)	3' UTR (NM_001127399, exon 4 of 4)	13403	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
151167	chr21	44941901	44942700	+	0	NA	intron (NM_001316983, intron 1 of 5)	intron (NM_001316983, intron 1 of 5)	2271	NM_058190	85395		NM_058190	ENSG00000160256	SLX9	C21orf70|FAM207A|PRED56	SLX9 ribosome biogenesis factor	protein-coding
189399	chr5	172758151	172758250	+	0	NA	non-coding (NR_161233, exon 2 of 4)	non-coding (NR_161233, exon 2 of 4)	2697	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
146091	chr20	47607151	47607650	+	0	NA	intron (NM_181659, intron 2 of 22)	MER34C|LTR|ERV1	105513	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
185487	chr5	131300301	131300500	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	36347	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
210694	chr7	100573371	100574350	+	0	NA	promoter-TSS (NM_001348680)	promoter-TSS (NM_001348680)	40	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
80171	chr16	2115551	2115930	+	0	NA	intron (NM_001009944, intron 9 of 45)	intron (NM_001009944, intron 9 of 45)	-8987	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
56165	chr12	111404301	111407900	+	0	NA	5' UTR (NM_005475, exon 1 of 8)	5' UTR (NM_005475, exon 1 of 8)	177	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
161775	chr3	44984221	44985030	+	0	NA	intron (NR_023353, intron 1 of 6)	MIR|SINE|MIR	8376	NR_023353	23016		NM_015004	ENSG00000075914	EXOSC7	EAP1|RRP42|Rrp42p|hRrp42p|p8	exosome component 7	protein-coding
176862	chr4	102614041	102614300	+	0	NA	intron (NM_001382625, intron 24 of 24)	L2|LINE|L2	-111684	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
139135	chr2	218999271	218999780	+	0	NA	Intergenic	Intergenic	2183	NR_029867	494324		NR_029867	ENSG00000198973	MIR375	MIRN375|hsa-mir-375|miRNA375|mir-375	microRNA 375	ncRNA
960	chr1	1766721	1767080	+	0	NA	intron (NM_001353641, intron 1 of 11)	AluJr|SINE|Alu	-8258	NM_001198995	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
167643	chr3	129607871	129609830	+	0	NA	Intergenic	Intergenic	-2174	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
140709	chr2	234373201	234374000	+	0	NA	Intergenic	Intergenic	80995	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
4079	chr1	19073451	19073550	+	0	NA	Intergenic	Intergenic	-116824	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
49730	chr12	31332551	31332730	+	0	NA	Intergenic	Intergenic	-6453	NM_001135811	58516		NM_021238	ENSG00000139146	SINHCAF	C12orf14|FAM60A|L4|TERA	SIN3-HDAC complex associated factor	protein-coding
82954	chr16	21897671	21897830	+	0	NA	Intergenic	AluJr|SINE|Alu	-31015	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
78586	chr15	93037601	93037800	+	0	NA	3' UTR (NM_001166288, exon 4 of 4)	3' UTR (NM_001166288, exon 4 of 4)	35456	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
48887	chr12	12491751	12492050	+	0	NA	intron (NM_030640, intron 4 of 6)	L2a|LINE|L2	70963	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
225382	chr9	35012801	35013000	+	0	NA	Intergenic	AluSz|SINE|Alu	22610	NM_001135005	25822		NM_012266	ENSG00000137094	DNAJB5	Hsc40	DnaJ heat shock protein family (Hsp40) member B5	protein-coding
38819	chr11	47296621	47297080	+	0	NA	intron (NR_164842, intron 23 of 33)	AluJb|SINE|Alu	-24740	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
198412	chr6	105991851	105993000	+	0	NA	Intergenic	Intergenic	-93911	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
55748	chr12	108457271	108457500	+	0	NA	Intergenic	Intergenic	16304	NR_120483	102723562		NR_120483	ENSG00000247213	LINC01498	-	long intergenic non-protein coding RNA 1498	ncRNA
69354	chr14	93989371	93989530	+	0	NA	Intergenic	Intergenic	-7820	NR_024182	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
120141	chr19	42214171	42214530	+	0	NA	intron (NM_001270615, intron 3 of 4)	AluSz|SINE|Alu	3327	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
227692	chr9	93012871	93013450	+	0	NA	intron (NM_001369952, intron 8 of 16)	intron (NM_001369952, intron 8 of 16)	1784	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
210793	chr7	100829371	100829530	+	0	NA	intron (NM_001363494, intron 1 of 10)	intron (NM_001363494, intron 1 of 10)	-1927	NM_004444	2050		NM_004444	ENSG00000196411	EPHB4	CMAVM2|HFASD|HTK|LMPHM7|MYK1|TYRO11	EPH receptor B4	protein-coding
191482	chr6	11204271	11204630	+	0	NA	intron (NM_182966, intron 2 of 2)	AluSg|SINE|Alu	28218	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
34571	chr10	133231651	133232380	+	0	NA	TTS (NM_003577)	TTS (NM_003577)	1798	NM_003577	8433		NM_003577	ENSG00000171794	UTF1	-	undifferentiated embryonic cell transcription factor 1	protein-coding
215115	chr7	155340221	155340550	+	0	NA	Intergenic	Intergenic	27548	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
15274	chr1	149700471	149701450	+	0	NA	promoter-TSS (NR_111933).2	promoter-TSS (NR_111933).2	-144	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
206497	chr7	33128921	33130630	+	0	NA	non-coding (NR_145413, exon 1 of 24)	non-coding (NR_145413, exon 1 of 24)	211	NM_198428	27241		NM_014451	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
85229	chr16	48055051	48055350	+	0	NA	Intergenic	Intergenic	89511	NR_146502	105371238		NR_146502		LINC02134	-	long intergenic non-protein coding RNA 2134	ncRNA
136499	chr2	177235601	177235800	+	0	NA	intron (NM_001313902, intron 1 of 3)	AluJo|SINE|Alu	20310	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
81221	chr16	4517121	4517380	+	0	NA	intron (NM_001199055, intron 1 of 5)	intron (NM_001199055, intron 1 of 5)	21179	NM_001199054	29965		NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
31546	chr10	97025671	97025900	+	0	NA	intron (NM_003061, intron 25 of 36)	Tigger12c|DNA|TcMar-Tigger	-76971	NR_038330	100505540		NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
99784	chr17	51162671	51163650	+	0	NA	TTS (NM_000269)	TTS (NM_000269)	-2376	NM_001018137	4831		NM_002512	ENSG00000243678	NME2	NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF	NME/NM23 nucleoside diphosphate kinase 2	protein-coding
57835	chr12	123243821	123244280	+	0	NA	intron (NM_001194995, intron 1 of 2)	intron (NM_001194995, intron 1 of 2)	10306	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
32142	chr10	101287551	101288000	+	0	NA	Intergenic	Intergenic	-24225	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
68577	chr14	89430431	89431730	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	13726	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
108095	chr18	61901221	61901800	+	0	NA	Intergenic	Intergenic	-8503	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
46071	chr11	122754371	122754930	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	-83850	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
142705	chr20	8187851	8187950	+	0	NA	intron (NM_015192, intron 2 of 31)	intron (NM_015192, intron 2 of 31)	55634	NM_182734	23236		NM_015192	ENSG00000182621	PLCB1	DEE12|EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B	phospholipase C beta 1	protein-coding
197126	chr6	57370601	57370800	+	0	NA	intron (NM_000947, intron 5 of 13)	AluSx|SINE|Alu	-19432	NR_036097	100422884		NR_036097	ENSG00000212017	MIR548U	-	microRNA 548u	ncRNA
40425	chr11	64176651	64176950	+	0	NA	Intergenic	AluSz|SINE|Alu	-8472	NM_001282652	10963		NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
165182	chr3	72441151	72441250	+	0	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	5423	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
65557	chr14	51934871	51935230	+	0	NA	intron (NM_053064, intron 2 of 3)	AluY|SINE|Alu	-16479	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
40373	chr11	63992321	63992780	+	0	NA	intron (NR_003089, intron 3 of 5)	AluSz|SINE|Alu	6697	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
181110	chr5	37013671	37013830	+	0	NA	intron (NM_133433, intron 21 of 46)	SVA_D|Retroposon|SVA	136981	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
202973	chr6	161269171	161269530	+	0	NA	intron (NM_020133, intron 1 of 8)	intron (NM_020133, intron 1 of 8)	4711	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
109631	chr19	989651	990480	+	0	NA	intron (NM_001372085, intron 5 of 11)	intron (NM_001372085, intron 5 of 11)	5720	NM_024100	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
34620	chr10	133283571	133283750	+	0	NA	intron (NM_001256618, intron 13 of 16)	intron (NM_001256618, intron 13 of 16)	-6792	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
18254	chr1	161062701	161063280	+	0	NA	intron (NM_001025598, intron 1 of 11)	AluSp|SINE|Alu	6901	NM_181720	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
73201	chr15	41545471	41545630	+	0	NA	Intergenic	AluSx|SINE|Alu	-1293	NM_015540	26015		NM_015540	ENSG00000103932	RPAP1	-	RNA polymerase II associated protein 1	protein-coding
54297	chr12	89353401	89354830	+	0	NA	Intergenic	CpG-5829	-1614	NM_001946	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
147932	chr20	62923501	62923700	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	2905	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
115781	chr19	16359801	16360300	+	0	NA	intron (NR_047665, intron 22 of 22)	intron (NR_047665, intron 22 of 22)	35224	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
18432	chr1	161469301	161470200	+	0	NA	Intergenic	CpG	-35707	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
47481	chr12	3931101	3931700	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-57952	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
221271	chr8	122797301	122797700	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	15845	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
237431	chrX	119671271	119671430	+	0	NA	intron (NM_145799, intron 2 of 10)	AluY|SINE|Alu	21818	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
116237	chr19	17543371	17543530	+	0	NA	intron (NM_001363609, intron 11 of 13)	intron (NM_001363609, intron 11 of 13)	-12199	NM_024656	79709		NM_024656	ENSG00000130309	COLGALT1	BSVD3|ColGalT 1|GLT25D1	collagen beta(1-O)galactosyltransferase 1	protein-coding
163822	chr3	52446021	52446380	+	0	NA	Intergenic	Intergenic	-1097	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
235263	chrX	41723871	41724300	+	0	NA	promoter-TSS (NM_080817)	promoter-TSS (NM_080817)	-96	NM_080817	27197		NM_080817	ENSG00000171657	GPR82	-	G protein-coupled receptor 82	protein-coding
188180	chr5	150487671	150487830	+	0	NA	Intergenic	Intergenic	-1758	NR_105061	102546298		NR_105061	ENSG00000254333	NDST1-AS1	-	NDST1 antisense RNA 1	ncRNA
37350	chr11	14906751	14906850	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-14569	NM_024514	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
97555	chr17	44078371	44079280	+	0	NA	exon (NM_001015053, exon 25 of 27)	exon (NM_001015053, exon 25 of 27)	7914	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
3232	chr1	13782351	13782850	+	0	NA	exon (NM_012231, exon 8 of 10)	exon (NM_012231, exon 8 of 10)	33185	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
125212	chr2	10307851	10308150	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	4300	NM_134421	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
180885	chr5	33964901	33965100	+	0	NA	intron (NM_016180, intron 2 of 6)	intron (NM_016180, intron 2 of 6)	19693	NM_001297417	51151		NM_016180	ENSG00000164175	SLC45A2	1A1|AIM1|MATP|OCA4|SHEP5	solute carrier family 45 member 2	protein-coding
17876	chr1	160046321	160047350	+	0	NA	intron (NM_002241, intron 1 of 1)	intron (NM_002241, intron 1 of 1)	-14845	NM_145167	93183		NM_145167	ENSG00000143315	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis class M	protein-coding
70458	chr14	102057321	102058400	+	0	NA	Intergenic	MER4A1|LTR|ERV1	29184	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
216034	chr8	9555321	9556730	+	0	NA	exon (NM_003747, exon 1 of 27)	exon (NM_003747, exon 1 of 27)	113	NM_003747	8658		NM_003747	ENSG00000173273	TNKS	ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5	tankyrase	protein-coding
173430	chr4	8211471	8211830	+	0	NA	intron (NM_001318480, intron 3 of 17)	intron (NM_001318480, intron 3 of 17)	12360	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
226354	chr9	69829471	69829930	+	0	NA	intron (NR_131757, intron 1 of 2)	intron (NR_131757, intron 1 of 2)	8883	NR_131756	138255		NM_001010940	ENSG00000204711	CFAP95	C9orf135	cilia and flagella associated protein 95	protein-coding
140631	chr2	233463221	233463780	+	0	NA	intron (NM_001377259, intron 24 of 27)	CpG	26398	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
128908	chr2	64213101	64213300	+	0	NA	Intergenic	Intergenic	-7715	NR_033837	150992		NR_033837	ENSG00000230923	LINC00309	NCRNA00309	long intergenic non-protein coding RNA 309	ncRNA
216301	chr8	12605951	12606250	+	0	NA	intron (NR_047662, intron 4 of 8)	intron (NR_047662, intron 4 of 8)	59511	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
69633	chr14	97710571	97710800	+	0	NA	Intergenic	Intergenic	-24027	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
12880	chr1	110214751	110215550	+	0	NA	intron (NM_001377331, intron 1 of 2)	intron (NM_001377331, intron 1 of 2)	4836	NM_001377331	3749		NM_004978	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	potassium voltage-gated channel subfamily C member 4	protein-coding
125983	chr2	25288271	25288430	+	0	NA	intron (NR_135490, intron 3 of 23)	AluYh3|SINE|Alu	-36035	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
59370	chr13	24694871	24695030	+	0	NA	intron (NM_001185085, intron 11 of 22)	intron (NM_001185085, intron 11 of 22)	14539	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
141813	chr20	330371	330930	+	0	NA	TTS (NM_006943)	TTS (NM_006943)	5079	NM_006943	6666		NM_006943	ENSG00000177732	SOX12	SOX22	SRY-box transcription factor 12	protein-coding
7552	chr1	35030201	35030500	+	0	NA	intron (NM_007167, intron 2 of 15)	AluJb|SINE|Alu	1595	NM_007167	9204		NM_007167	ENSG00000163867	ZMYM6	Buster2|MYM|ZBED7|ZNF198L4|ZNF258	zinc finger MYM-type containing 6	protein-coding
14565	chr1	145012901	145013300	+	0	NA	intron (NM_001385227, intron 2 of 8)	intron (NM_001385227, intron 2 of 8)	-81196	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
89093	chr16	88481571	88481730	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	12732	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
218772	chr8	58977051	58977550	+	0	NA	intron (NM_014729, intron 1 of 8)	Tigger1|DNA|TcMar-Tigger	141847	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
150630	chr21	43387251	43387350	+	0	NA	Intergenic	MIRb|SINE|MIR	-24951	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
96104	chr17	39628571	39629150	+	0	NA	intron (NM_181505, intron 1 of 6)	intron (NM_181505, intron 1 of 6)	357	NM_001242464	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
128658	chr2	61448951	61449250	+	0	NA	intron (NM_014709, intron 1 of 79)	AluSp|SINE|Alu	21987	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
148883	chr21	8453821	8454330	+	0	NA	Intergenic	L1PREC2|LINE|L1	12929	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
124176	chr19	56136371	56136530	+	0	NA	Intergenic	Intergenic	-4837	NM_018337	55311		NM_018337	ENSG00000167685	ZNF444	EZF-2|EZF2|ZSCAN17	zinc finger protein 444	protein-coding
121455	chr19	47043351	47043450	+	0	NA	intron (NM_002517, intron 11 of 11)	AluSc8|SINE|Alu	5224	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
193975	chr6	31724571	31724930	+	0	NA	exon (NM_138274, exon 3 of 4)	exon (NM_138274, exon 3 of 4)	1377	NM_138272	80739		NM_025260	ENSG00000204420	MPIG6B	C6orf25|G6b|G6b-B|NG31|THAMY	megakaryocyte and platelet inhibitory receptor G6b	protein-coding
58951	chr13	19780251	19780350	+	0	NA	intron (NM_001354909, intron 1 of 8)	SVA_F|Retroposon|SVA	2645	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
189093	chr5	170296421	170297090	+	0	NA	intron (NM_005565, intron 1 of 20)	intron (NM_005565, intron 1 of 20)	1022	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
224670	chr9	21094571	21094930	+	0	NA	Intergenic	Intergenic	-16808	NM_002176	3456		NM_002176	ENSG00000171855	IFNB1	IFB|IFF|IFN-beta|IFNB	interferon beta 1	protein-coding
145808	chr20	45426401	45427030	+	0	NA	promoter-TSS (NR_159957)	promoter-TSS (NR_159957)	-707	NR_159957	105372631		NR_159957		LOC105372631	-	uncharacterized LOC105372631	ncRNA
35608	chr11	1761621	1762600	+	0	NA	intron (NM_001909, intron 1 of 8)	intron (NM_001909, intron 1 of 8)	1817	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
14590	chr1	145215901	145216430	+	0	NA	promoter-TSS (NR_111954)	promoter-TSS (NR_111954)	-113	NR_111955	103091866		NR_111954		LINC01145	-	long intergenic non-protein coding RNA 1145	ncRNA
144382	chr20	35154501	35154700	+	0	NA	intron (NM_001355008, intron 5 of 14)	SVA_F|Retroposon|SVA	-7264	NR_026728	55741		NM_018217	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	ER degradation enhancing alpha-mannosidase like protein 2	protein-coding
195166	chr6	35805151	35805750	+	0	NA	promoter-TSS (NM_182548)	promoter-TSS (NM_182548)	98	NM_182548	222662		NM_182548	ENSG00000197753	LHFPL5	DFNB67|TMHS|dJ510O8.8	LHFPL tetraspan subfamily member 5	protein-coding
27755	chr10	35208601	35209350	+	0	NA	intron (NM_183060, intron 5 of 5)	MIR|SINE|MIR	13073	NM_182724	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
229472	chr9	122092421	122093850	+	0	NA	exon (NM_001139442, exon 1 of 9)	exon (NM_001139442, exon 1 of 9)	173	NM_001139442	158135		NM_194252	ENSG00000175764	TTLL11	C9orf148|C9orf20|TTLL11-IT1|bA244O19.1	tubulin tyrosine ligase like 11	protein-coding
41216	chr11	65665471	65665950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2738	NM_001243985	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
184557	chr5	102763591	102764030	+	0	NA	intron (NM_001364588, intron 1 of 24)	L2b|LINE|L2	8505	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
63367	chr13	114046171	114046750	+	0	NA	intron (NM_001320822, intron 3 of 23).2	MER66B|LTR|ERV1	31495	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
237223	chrX	109712951	109713350	+	0	NA	intron (NM_022977, intron 1 of 16)	intron (NM_022977, intron 1 of 16)	-19361	NR_158569	105373311		NR_158569		LOC105373311	-	uncharacterized LOC105373311	ncRNA
161498	chr3	42533651	42533950	+	0	NA	intron (NM_004624, intron 10 of 12)	intron (NM_004624, intron 10 of 12)	-1194	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
98147	chr17	46025371	46025530	+	0	NA	non-coding (NR_165166, exon 10 of 10)	non-coding (NR_165166, exon 10 of 10)	26200	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
168695	chr3	150617921	150618780	+	0	NA	intron (NM_016275, intron 1 of 5)	intron (NM_016275, intron 1 of 5)	15029	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
169304	chr3	158671001	158671200	+	0	NA	intron (NM_020169, intron 1 of 5)	intron (NM_020169, intron 1 of 5)	1548	NM_020169	56925		NM_020169	ENSG00000079257	LXN	ECI|TCI	latexin	protein-coding
72646	chr15	38496171	38496330	+	0	NA	intron (NM_001128602, intron 14 of 15)	intron (NM_001128602, intron 14 of 15)	42123	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
203417	chr7	264971	265650	+	0	NA	Intergenic	Intergenic	-24860	NM_001374838	116033993		NM_001374838	ENSG00000248767	FOXL3	-	forkhead box L3	protein-coding
133419	chr2	118864971	118865430	+	0	NA	Intergenic	Intergenic	-17552	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
182253	chr5	57185221	57185550	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluSq2|SINE|Alu	9937	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
169031	chr3	152596121	152596500	+	0	NA	Intergenic	Intergenic	-238821	NM_002563	5028		NM_002563	ENSG00000169860	P2RY1	P2Y1|SARCC	purinergic receptor P2Y1	protein-coding
107349	chr18	45874571	45875750	+	0	NA	intron (NM_020964, intron 35 of 43)	L1MEd|LINE|L1	49485	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
206479	chr7	33048001	33048400	+	0	NA	intron (NM_001374336, intron 1 of 10)	intron (NM_001374336, intron 1 of 10)	-7294	NM_001166118	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
100721	chr17	63882101	63882930	+	0	NA	promoter-TSS (NM_002059)	promoter-TSS (NM_002059)	-571	NM_022557	2689		NM_002059	ENSG00000136487	GH2	GH-V|GHB2|GHL|GHV|hGH-V	growth hormone 2	protein-coding
217271	chr8	27339321	27339580	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	13886	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
136477	chr2	177216471	177216950	+	0	NA	exon (NM_001330247, exon 6 of 11)	exon (NM_001330247, exon 6 of 11)	3916	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
237347	chrX	118536151	118537250	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	40791	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
159720	chr3	15745251	15746100	+	0	NA	intron (NM_001349280, intron 3 of 26)	L1PBa|LINE|L1	10872	NM_001195099	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
156523	chr22	41411151	41411950	+	0	NA	Intergenic	Intergenic	29608	NM_003216	7008		NM_003216	ENSG00000167074	TEF	-	TEF transcription factor, PAR bZIP family member	protein-coding
229565	chr9	123191871	123192030	+	0	NA	intron (NM_001376106, intron 1 of 17)	L2a|LINE|L2	-76473	NR_026677	81571		NM_030814	ENSG00000236901	MIR600HG	C9orf45|GL012|NCRNA00287	MIR600 host gene	ncRNA
51602	chr12	52835771	52836700	+	0	NA	Intergenic	Intergenic	-1924	NM_175834	338785		NM_175834	ENSG00000185640	KRT79	K6L|KRT6L	keratin 79	protein-coding
90164	chr17	241871	242500	+	0	NA	intron (NM_006987, intron 7 of 9).2	intron (NM_006987, intron 7 of 9).2	-54934	NR_104420	100506371		NR_104420		LINC02091	-	long intergenic non-protein coding RNA 2091	ncRNA
177403	chr4	112282451	112282550	+	0	NA	intron (NM_052864, intron 1 of 1)	LTR36|LTR|ERV1	3404	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
232392	chr9	135978271	135978430	+	0	NA	Intergenic	Intergenic	-16977	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
203591	chr7	926801	927000	+	0	NA	intron (NM_006869, intron 2 of 10)	intron (NM_006869, intron 2 of 10)	316	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
84394	chr16	30324701	30325100	+	0	NA	intron (NR_002453, intron 1 of 12)	AluSq10|SINE|Alu	10474	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
126887	chr2	32277621	32279030	+	0	NA	intron (NM_032312, intron 1 of 5)	CpG	421	NM_032312	84272		NM_032312	ENSG00000119820	YIPF4	FinGER4|Nbla11189|YIPFalpha2	Yip1 domain family member 4	protein-coding
113090	chr19	8270351	8271150	+	0	NA	Intergenic	AluSz6|SINE|Alu	37608	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
153010	chr22	23200051	23200350	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	19691	NM_021574	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
38484	chr11	45848871	45849680	+	0	NA	intron (NM_021117, intron 1 of 11)	intron (NM_021117, intron 1 of 11)	1800	NM_021117	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
25387	chr10	6496671	6496830	+	0	NA	intron (NM_001282644, intron 7 of 17)	AluSx|SINE|Alu	83526	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
76150	chr15	72654471	72654830	+	0	NA	promoter-TSS (NM_018652)	promoter-TSS (NM_018652)	-47	NM_018652	55889		NM_018652	ENSG00000215186	GOLGA6B	GOLGA|GOLGA6D	golgin A6 family member B	protein-coding
117455	chr19	19685721	19686150	+	0	NA	Intergenic	AluSx4|SINE|Alu	17096	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
49974	chr12	42099051	42099230	+	0	NA	intron (NM_173601, intron 5 of 7)	intron (NM_173601, intron 5 of 7)	45734	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
193641	chr6	30821821	30822430	+	0	NA	intron (NR_130726, intron 1 of 1)	intron (NR_130726, intron 1 of 1)	8534	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
181228	chr5	39185251	39186600	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	33638	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
143011	chr20	20664851	20665030	+	0	NA	intron (NM_020343, intron 3 of 39)	intron (NM_020343, intron 3 of 39)	47704	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
63678	chr14	21074751	21075000	+	0	NA	exon (NM_018071, exon 3 of 24)	exon (NM_018071, exon 3 of 24)	-4003	NM_001282211	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
216850	chr8	22606771	22607980	+	0	NA	intron (NM_021174, intron 6 of 20)	intron (NM_021174, intron 6 of 20)	2333	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
171395	chr3	196186551	196187650	+	0	NA	Intergenic	Intergenic	24300	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
218576	chr8	55776621	55777080	+	0	NA	intron (NM_001363184, intron 1 of 11)	MER31B|LTR|ERV1	3404	NM_024831	96764		NM_024831	ENSG00000137574	TGS1	NCOA6IP|PIMT|PIPMT	trimethylguanosine synthase 1	protein-coding
189377	chr5	172710851	172711380	+	0	NA	Intergenic	Intergenic	-44388	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
34737	chr10	133762471	133763330	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-136105	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
20853	chr1	201890901	201891300	+	0	NA	intron (NM_198149, intron 3 of 4)	intron (NM_198149, intron 3 of 4)	2202	NM_198149	149345		NM_198149	ENSG00000198892	SHISA4	C1orf40|TMEM58	shisa family member 4	protein-coding
93045	chr17	17363371	17364130	+	0	NA	Intergenic	Intergenic	60377	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
7781	chr1	36228621	36229230	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluJr|SINE|Alu	4482	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
59529	chr13	27212321	27212780	+	0	NA	Intergenic	LTR12D|LTR|ERV1	24707	NR_120429	102723332		NR_120429		LINC00412	-	long intergenic non-protein coding RNA 412	ncRNA
71444	chr14	105683571	105684550	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-11253	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
44362	chr11	102454421	102455150	+	0	NA	intron (NR_135053, intron 1 of 1)	MLT1A0|LTR|ERVL-MaLR	1866	NR_135053	101928424		NR_135053	ENSG00000255337	TMEM123-DT	-	TMEM123 divergent transcript	ncRNA
149721	chr21	34126371	34126600	+	0	NA	intron (NM_032476, intron 2 of 2)	intron (NM_032476, intron 2 of 2)	52907	NM_006933	6526		NM_006933	ENSG00000198743	SLC5A3	BCW2|SMIT|SMIT1|SMIT2	solute carrier family 5 member 3	protein-coding
68731	chr14	90831101	90831580	+	0	NA	Intergenic	Intergenic	-14910	NM_001010854	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
155358	chr22	38284401	38284800	+	0	NA	Intergenic	AluJb|SINE|Alu	-11590	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
78991	chr15	101745071	101747550	+	0	NA	promoter-TSS (NR_168283)	promoter-TSS (NR_168283)	-572	NR_168283	100128108		NM_001321551	ENSG00000290760	UBE2Q2P13	-	UBE2Q2 pseudogene 13	pseudo
22465	chr1	221698271	221699130	+	0	NA	Intergenic	Intergenic	38200	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
60953	chr13	46553801	46555350	+	0	NA	intron (NM_015116, intron 1 of 18)	intron (NM_015116, intron 1 of 18)	1405	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
26096	chr10	13287971	13288730	+	0	NA	intron (NM_001323083, intron 4 of 6)	intron (NM_001323083, intron 4 of 6)	11396	NM_001037537	5264		NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
199000	chr6	110957951	110959250	+	0	NA	promoter-TSS (NM_138408)	promoter-TSS (NM_138408)	-106	NM_138408	112495		NM_138408	ENSG00000155115	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC subunit 6	protein-coding
50105	chr12	44861201	44861680	+	0	NA	intron (NM_001145108, intron 2 of 19)	L1M1|LINE|L1	14221	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
155671	chr22	39029121	39029780	+	0	NA	exon (NM_152426, exon 5 of 7)	exon (NM_152426, exon 5 of 7)	8323	NM_152426	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
207324	chr7	44042921	44043500	+	0	NA	TTS (NR_015401)	TTS (NR_015401)	-1430	NM_001284315	28988		NM_014063	ENSG00000136279	DBNL	ABP1|HIP-55|HIP55|SH3P7	drebrin like	protein-coding
6422	chr1	28090121	28090600	+	0	NA	Intergenic	L2a|LINE|L2	-1723	NM_001282562	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
126506	chr2	28412851	28412950	+	0	NA	3' UTR (NM_005253, exon 4 of 4)	3' UTR (NM_005253, exon 4 of 4)	-18228	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
224808	chr9	23826271	23826450	+	0	NA	promoter-TSS (NM_001351455)	promoter-TSS (NM_001351455)	-120	NM_001351468	1993		NM_004432	ENSG00000107105	ELAVL2	HEL-N1|HELN1|HUB	ELAV like RNA binding protein 2	protein-coding
29584	chr10	71725751	71727400	+	0	NA	intron (NM_001171930, intron 29 of 30)	intron (NM_001171930, intron 29 of 30)	-6797	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
145670	chr20	44980351	44980650	+	0	NA	intron (NM_006282, intron 3 of 10)	intron (NM_006282, intron 3 of 10)	13988	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
4544	chr1	22024101	22024700	+	0	NA	promoter-TSS (NR_023918)	promoter-TSS (NR_023918)	-791	NR_023918	29092		NM_014179	ENSG00000218510	LINC00339	HSPC157|NCRNA00339	long intergenic non-protein coding RNA 339	ncRNA
186723	chr5	139268321	139268780	+	0	NA	Intergenic	Intergenic	-5202	NM_001282278	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
232143	chr9	134039571	134039930	+	0	NA	intron (NM_007371, intron 9 of 11)	intron (NM_007371, intron 9 of 11)	14269	NM_001355256	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
22490	chr1	221730521	221730780	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	6250	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
189520	chr5	173617701	173618200	+	0	NA	Intergenic	AluSz|SINE|Alu	-1300	NM_138369	91272		NM_138369	ENSG00000145919	BOD1	FAM44B	biorientation of chromosomes in cell division 1	protein-coding
13011	chr1	111189751	111190800	+	0	NA	intron (NM_001271833, intron 8 of 11)	intron (NM_001271833, intron 8 of 11)	10371	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
190484	chr5	180313401	180314430	+	0	NA	exon (NM_005110, exon 14 of 19)	exon (NM_005110, exon 14 of 19)	-21832	NM_001135044	5601		NM_002752	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
201820	chr6	150022251	150022550	+	0	NA	intron (NM_130900, intron 1 of 4)	intron (NM_130900, intron 1 of 4)	3132	NM_130900	154064		NM_130900	ENSG00000155918	RAET1L	RAET1H|ULBP6	retinoic acid early transcript 1L	protein-coding
85905	chr16	57075171	57075330	+	0	NA	intron (NM_001384960, intron 37 of 45)	AluSp|SINE|Alu	-17333	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
49627	chr12	28189021	28189400	+	0	NA	non-coding (NR_148936, exon 1 of 1)	non-coding (NR_148936, exon 1 of 1)	-1246	NM_001352082	55297		NM_018318	ENSG00000123106	CCDC91	HSD8|p56	coiled-coil domain containing 91	protein-coding
50498	chr12	47804451	47804750	+	0	NA	intron (NR_160436, intron 1 of 25)	intron (NR_160436, intron 1 of 25)	15303	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
31308	chr10	92640271	92640580	+	0	NA	intron (NM_004523, intron 17 of 21)	(TTTTGT)n|Simple_repeat|Simple_repeat	47295	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
199281	chr6	111872001	111872900	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	621	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
58112	chr12	124863201	124864530	+	0	NA	promoter-TSS (NR_160419)	promoter-TSS (NR_160419)	-1	NM_001082959	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
148259	chr20	63666701	63667100	+	0	NA	intron (NM_032957, intron 7 of 34)	AluY|SINE|Alu	8588	NM_001283009	51750		NM_015647	ENSG00000258366	RTEL1	C20orf41|DKCA4|DKCB5|NHL|PFBMFT3|RTEL	regulator of telomere elongation helicase 1	protein-coding
238075	chrX	136149321	136149580	+	0	NA	intron (NM_001159700, intron 1 of 6)	intron (NM_001159700, intron 1 of 6)	891	NM_001159700	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
66685	chr14	63994151	63994330	+	0	NA	intron (NM_015180, intron 22 of 114)	MIRb|SINE|MIR	100885	NR_031677	100313830		NR_031677	ENSG00000221537	MIR548H1	MIR548H-1|MIRN548H1	microRNA 548h-1	ncRNA
78782	chr15	99423571	99424130	+	0	NA	Intergenic	Intergenic	-141567	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
30293	chr10	75225301	75226430	+	0	NA	intron (NM_003375, intron 9 of 10)	AluSx1|SINE|Alu	10092	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
74257	chr15	56989651	56989750	+	0	NA	intron (NM_207038, intron 3 of 19)	intron (NM_207038, intron 3 of 19)	70255	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
64053	chr14	22541021	22542230	+	0	NA	Intergenic	Intergenic	15437	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
195198	chr6	36101301	36101700	+	0	NA	intron (NM_001315, intron 9 of 11)	AluJb|SINE|Alu	-29013	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
132993	chr2	111531671	111532030	+	0	NA	Intergenic	Intergenic	-36689	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
96092	chr17	39615421	39616080	+	0	NA	Intergenic	Intergenic	-7830	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
52849	chr12	57100321	57100580	+	0	NA	intron (NR_033659, intron 12 of 20)	MIR|SINE|MIR	9839	NM_001178079	6778		NM_003153	ENSG00000166888	STAT6	D12S1644|HIES6|IL-4-STAT|STAT6B|STAT6C	signal transducer and activator of transcription 6	protein-coding
107043	chr18	32132101	32133080	+	0	NA	Intergenic	AluJb|SINE|Alu	39984	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
183067	chr5	73540321	73540580	+	0	NA	Intergenic	Intergenic	25189	NM_023039	57763		NM_023039	ENSG00000164331	ANKRA2	ANKRA	ankyrin repeat family A member 2	protein-coding
153237	chr22	23978171	23978330	+	0	NA	intron (NM_001355, intron 1 of 3).2	intron (NM_001355, intron 1 of 3).2	1578	NM_001355	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
31742	chr10	97768221	97768680	+	0	NA	intron (NM_003015, intron 2 of 2)	MER63A|DNA|hAT-Blackjack	3549	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
161466	chr3	42226571	42226750	+	0	NA	TTS (NR_146089)	TTS (NR_146089)	37287	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
229104	chr9	114387501	114388490	+	0	NA	promoter-TSS (NM_001317950)	promoter-TSS (NM_001317950)	-13	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
219151	chr8	66430411	66431000	+	0	NA	TTS (NM_015169)	TTS (NM_015169)	1691	NM_015169	23212		NM_015169	ENSG00000179041	RRS1	-	ribosome biogenesis regulator 1 homolog	protein-coding
154757	chr22	36509671	36509930	+	0	NA	Intergenic	AluJr|SINE|Alu	-2760	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
211692	chr7	106704271	106704700	+	0	NA	Intergenic	L1MC1|LINE|L1	-43327	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
186624	chr5	138539921	138540730	+	0	NA	intron (NM_001291975, intron 2 of 11)	intron (NM_001291975, intron 2 of 11)	1386	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
97448	chr17	43660901	43661580	+	0	NA	exon (NM_013999, exon 1 of 2)	exon (NM_013999, exon 1 of 2)	323	NM_013999	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
70545	chr14	102525301	102525780	+	0	NA	Intergenic	L1MB3|LINE|L1	-14104	NR_036192	100422954		NR_036192	ENSG00000266015	MIR4309	-	microRNA 4309	ncRNA
115302	chr19	14676721	14677080	+	0	NA	Intergenic	(TGA)n|Simple_repeat|Simple_repeat	-1982	NM_001289158	84658		NM_032571	ENSG00000131355	ADGRE3	EMR3	adhesion G protein-coupled receptor E3	protein-coding
157253	chr22	43495171	43495600	+	0	NA	intron (NM_001362786, intron 4 of 6)	intron (NM_001362786, intron 4 of 6)	-20869	NR_046563	100874197		NR_046563		EFCAB6-AS1	-	EFCAB6 antisense RNA 1	ncRNA
213672	chr7	140036171	140036730	+	0	NA	intron (NR_130117, intron 6 of 10)	intron (NR_130117, intron 6 of 10)	26501	NM_022750	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
124238	chr19	57391271	57391730	+	0	NA	intron (NM_152909, intron 1 of 2)	L1PB4|LINE|L1	1646	NM_001172773	147694		NM_152909	ENSG00000188785	ZNF548	-	zinc finger protein 548	protein-coding
74777	chr15	63254601	63254800	+	0	NA	intron (NM_016530, intron 3 of 7)	AluY|SINE|Alu	-22850	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
59401	chr13	25174451	25174550	+	0	NA	intron (NR_120428, intron 2 of 3)	(TCA)n|Simple_repeat|Simple_repeat	-2217	NM_152704	219287		NM_152704	ENSG00000165566	AMER2	FAM123A	APC membrane recruitment protein 2	protein-coding
179065	chr4	165613051	165613150	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-71539	NR_121676	101928151		NR_121676	ENSG00000249500	LINC01179	-	long intergenic non-protein coding RNA 1179	ncRNA
218549	chr8	54023451	54024230	+	0	NA	Intergenic	AluSq|SINE|Alu	-1392	NR_109902	6917		NM_006756	ENSG00000187735	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A1	protein-coding
59895	chr13	30738751	30739000	+	0	NA	intron (NM_001629, intron 1 of 4)	intron (NM_001629, intron 1 of 4)	3332	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
123758	chr19	55084401	55085500	+	0	NA	intron (NM_133180, intron 14 of 19)	MIR3|SINE|MIR	4558	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
47765	chr12	6547101	6547300	+	0	NA	intron (NM_001039670, intron 8 of 9)	AluJb|SINE|Alu	8842	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
15046	chr1	148389971	148390130	+	0	NA	Intergenic	MER41E|LTR|ERV1	1768	NR_106967	102466225		NR_106967	ENSG00000278596	MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
84024	chr16	29483401	29485680	+	0	NA	exon (NM_001355401, exon 8 of 8)	exon (NM_001355401, exon 8 of 8)	-16962	NR_002556	388242		NR_002556	ENSG00000290678	LOC388242	-	SAGA complex associated factor 29 pseudogene	pseudo
226211	chr9	65675171	65676660	+	0	NA	promoter-TSS (NM_001330668)	promoter-TSS (NM_001330668)	-13	NM_001363751	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
54464	chr12	91985021	91985630	+	0	NA	non-coding (NR_046159, exon 6 of 6)	non-coding (NR_046159, exon 6 of 6)	156388	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
194593	chr6	33448971	33449130	+	0	NA	intron (NM_006772, intron 18 of 18).2	intron (NM_006772, intron 18 of 18).2	-5526	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
97626	chr17	44177651	44177750	+	0	NA	exon (NM_080863, exon 4 of 5)	exon (NM_080863, exon 4 of 5)	6996	NM_080863	92591		NM_080863	ENSG00000161664	ASB16	-	ankyrin repeat and SOCS box containing 16	protein-coding
14079	chr1	120850001	120851680	+	0	NA	TTS (NR_104086)	TTS (NR_104086)	145	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
186170	chr5	134192551	134193000	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-15742	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
64786	chr14	34833671	34834500	+	0	NA	intron (NM_013448, intron 3 of 26)	intron (NM_013448, intron 3 of 26)	-40106	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
68120	chr14	75498101	75498300	+	0	NA	Intergenic	AluY|SINE|Alu	-24269	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
17366	chr1	156525721	156526380	+	0	NA	3' UTR (NM_178229, exon 38 of 38)	3' UTR (NM_178229, exon 38 of 38)	-25275	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
13640	chr1	116499021	116499350	+	0	NA	Intergenic	Intergenic	-20359	NR_125973	101929023		NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
204643	chr7	5417001	5417480	+	0	NA	intron (NM_001080495, intron 2 of 29)	AluJb|SINE|Alu	6306	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
9614	chr1	52368321	52369180	+	0	NA	Intergenic	CpG	-2545	NM_032449	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
59860	chr13	30608971	30609130	+	0	NA	intron (NM_001370340, intron 1 of 4)	AluY|SINE|Alu	8537	NM_001370340	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
192297	chr6	20707971	20708680	+	0	NA	intron (NM_017774, intron 5 of 15)	intron (NM_017774, intron 5 of 15)	173868	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
122190	chr19	48935671	48936030	+	0	NA	intron (NM_014475, intron 2 of 6)	intron (NM_014475, intron 2 of 6)	2151	NM_014475	27294		NM_014475	ENSG00000104808	DHDH	2DD|HUM2DD	dihydrodiol dehydrogenase	protein-coding
47790	chr12	6570171	6571230	+	0	NA	intron (NM_001273, intron 39 of 39)	intron (NM_001273, intron 39 of 39)	-2409	NM_001258308	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
94356	chr17	28907751	28908500	+	0	NA	3' UTR (NM_001290131, exon 11 of 11)	3' UTR (NM_001290131, exon 11 of 11)	-5046	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
222696	chr8	141294451	141294900	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	13613	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
99743	chr17	50932651	50933100	+	0	NA	Intergenic	Intergenic	-64897	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
206446	chr7	32877971	32878700	+	0	NA	intron (NM_015483, intron 2 of 3)	AluSg|SINE|Alu	13425	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
107376	chr18	46046251	46046350	+	0	NA	intron (NM_024430, intron 1 of 14)	intron (NM_024430, intron 1 of 14)	25960	NM_024430	9050		NM_024430	ENSG00000152229	PSTPIP2	MAYP	proline-serine-threonine phosphatase interacting protein 2	protein-coding
222940	chr8	143025101	143025700	+	0	NA	Intergenic	Intergenic	6871	NM_002346	4061		NM_002346	ENSG00000160932	LY6E	RIG-E|RIGE|SCA-2|SCA2|TSA-1	lymphocyte antigen 6 family member E	protein-coding
143884	chr20	32570471	32570900	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	14648	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
12705	chr1	109493751	109494950	+	0	NA	intron (NM_182580, intron 1 of 2)	intron (NM_182580, intron 1 of 2)	256	NM_182580	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
61239	chr13	49821571	49821730	+	0	NA	Intergenic	MER66C|LTR|ERV1	-28968	NM_002267	3839		NM_002267	ENSG00000102753	KPNA3	IPOA4|SPG88|SRP1|SRP1gamma|SRP4|hSRP1	karyopherin subunit alpha 3	protein-coding
65231	chr14	49861151	49862200	+	0	NA	TTS (NR_027260)	TTS (NR_027260)	1174	NR_027260	378706		NR_027260	ENSG00000274012	RN7SL2	7L1C|7L30.1|7SL1c|RNSRP2	RNA component of signal recognition particle 7SL2	scRNA
27622	chr10	32939521	32939880	+	0	NA	intron (NM_002211, intron 1 of 15)	Tigger3c|DNA|TcMar-Tigger	-4142	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
53381	chr12	64683501	64685600	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSp|SINE|Alu	-61945	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
11733	chr1	91891671	91892280	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	-5824	NM_003243	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
10979	chr1	84433401	84434330	+	0	NA	Intergenic	Intergenic	25595	NM_058248	58511		NM_021233	ENSG00000137976	DNASE2B	DLAD	deoxyribonuclease 2 beta	protein-coding
197242	chr6	69798401	69798600	+	0	NA	Intergenic	LTR62|LTR|ERVL	-1490	NM_018368	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
235328	chrX	43654321	43655550	+	0	NA	promoter-TSS (NM_001270458)	promoter-TSS (NM_001270458)	28	NM_001270458	4128		NM_000240	ENSG00000189221	MAOA	BRNRS|MAO-A	monoamine oxidase A	protein-coding
80924	chr16	3800021	3801230	+	0	NA	intron (NM_004380, intron 3 of 30)	AluJr|SINE|Alu	79495	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
61988	chr13	80338751	80339400	+	0	NA	5' UTR (NM_001318538, exon 1 of 2)	5' UTR (NM_001318538, exon 1 of 2)	584	NM_001318537	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
165205	chr3	72820901	72821650	+	0	NA	intron (NM_018130, intron 6 of 10)	intron (NM_018130, intron 6 of 10)	27170	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
89116	chr16	88498201	88498650	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	29507	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
236553	chrX	72245121	72245700	+	0	NA	intron (NM_001170747, intron 3 of 3)	AluJr4|SINE|Alu	-6383	NM_017669	54821		NM_017669	ENSG00000186871	ERCC6L	PICH|RAD26L	ERCC excision repair 6 like, spindle assembly checkpoint helicase	protein-coding
35807	chr11	2205601	2205800	+	0	NA	Intergenic	Intergenic	32637	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
225639	chr9	36335771	36335930	+	0	NA	TTS (NM_022781)	TTS (NM_022781)	-58872	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
146873	chr20	51494221	51495430	+	0	NA	intron (NM_173091, intron 3 of 9)	intron (NM_173091, intron 3 of 9)	-41848	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
628	chr1	1331671	1332030	+	0	NA	exon (NM_152228, exon 2 of 6)	exon (NM_152228, exon 2 of 6)	570	NM_152228	83756		NM_152228	ENSG00000169962	TAS1R3	T1R3	taste 1 receptor member 3	protein-coding
204744	chr7	5573221	5573680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-19366	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
55124	chr12	98598421	98598680	+	0	NA	exon (NM_005888, exon 5 of 8)	exon (NM_005888, exon 5 of 8)	-1085	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
24352	chr1	240492951	240493280	+	0	NA	exon (NM_022469, exon 2 of 2)	exon (NM_022469, exon 2 of 2)	119040	NM_022469	64388		NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC|STHAG9	gremlin 2, DAN family BMP antagonist	protein-coding
216782	chr8	22513201	22513400	+	0	NA	exon (NM_001243975, exon 6 of 13)	exon (NM_001243975, exon 6 of 13)	-38627	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
18930	chr1	168469621	168470250	+	0	NA	intron (NR_125956, intron 4 of 4)	intron (NR_125956, intron 4 of 4)	25709	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
42306	chr11	68459571	68461980	+	0	NA	promoter-TSS (NM_001352375)	promoter-TSS (NM_001352375)	23	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
40863	chr11	65087451	65088200	+	0	NA	TTS (NM_001242631)	TTS (NM_001242631)	1285	NM_001242631	100130348		NM_001242631	ENSG00000187066	TMEM262	-	transmembrane protein 262	protein-coding
145124	chr20	38810571	38811250	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	5213	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
76411	chr15	74767821	74768080	+	0	NA	Intergenic	Intergenic	-14130	NM_001127190	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
21888	chr1	207802921	207803180	+	0	NA	promoter-TSS (NR_029518)	promoter-TSS (NR_029518)	-527	NR_029518	407025		NR_029518	ENSG00000284203	MIR29B2	MIRN29B2	microRNA 29b-2	ncRNA
80677	chr16	3030671	3030830	+	0	NA	exon (NM_001103175, exon 3 of 9)	exon (NM_001103175, exon 3 of 9)	-1731	NR_047572	100128770		NR_047572	ENSG00000205890	LOC100128770	-	uncharacterized LOC100128770	ncRNA
218988	chr8	63009101	63009500	+	0	NA	Intergenic	Intergenic	29506	NM_003878	8836		NM_003878	ENSG00000137563	GGH	GATD10|GH	gamma-glutamyl hydrolase	protein-coding
42455	chr11	69426071	69426450	+	0	NA	intron (NM_001319657, intron 1 of 1)	intron (NM_001319657, intron 1 of 1)	605	NM_001319657	102724265		NM_001319657	ENSG00000255980	LINC02953	-	long intergenic non-protein coding RNA 2953	ncRNA
128899	chr2	64142171	64142350	+	0	NA	intron (NM_020651, intron 1 of 6)	intron (NM_020651, intron 1 of 6)	2160	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
126381	chr2	27493651	27494130	+	0	NA	intron (NM_022823, intron 4 of 6)	intron (NM_022823, intron 4 of 6)	1310	NM_022823	64838		NM_022823	ENSG00000115226	FNDC4	FRCP1	fibronectin type III domain containing 4	protein-coding
166715	chr3	121313751	121313850	+	0	NA	intron (NR_145516, intron 21 of 28)	SVA_E|Retroposon|SVA	232188	NM_199420	10721		NM_006596	ENSG00000051341	POLQ	PRO0327	DNA polymerase theta	protein-coding
87033	chr16	68275251	68277580	+	0	NA	intron (NM_001076785, intron 4 of 11)	intron (NM_001076785, intron 4 of 11)	11889	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
215903	chr8	8144301	8144650	+	0	NA	intron (NR_147089, intron 2 of 3)	HERVS71-int|LTR|ERV1	-55386	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
96322	chr17	40013421	40014550	+	0	NA	Intergenic	Intergenic	-1455	NR_168490	1440		NM_000759	ENSG00000108342	CSF3	C17orf33|CSF3OS|GCSF	colony stimulating factor 3	protein-coding
229	chr1	866221	866480	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	10452	NR_027055	284593		NR_027055	ENSG00000230368	FAM41C	-	family with sequence similarity 41 member C	ncRNA
173840	chr4	21102851	21102950	+	0	NA	intron (NM_147182, intron 2 of 8)	intron (NM_147182, intron 2 of 8)	-118891	NM_001363504	80333		NM_025221	ENSG00000185774	KCNIP4	CALP|KCHIP4	potassium voltage-gated channel interacting protein 4	protein-coding
86546	chr16	67185341	67186250	+	0	NA	intron (NM_178516, intron 9 of 13)	intron (NM_178516, intron 9 of 13)	-1832	NM_001040715	653319		NM_001040715	ENSG00000196123	MATCAP1	KIAA0895L|TMCP1	microtubule associated tyrosine carboxypeptidase 1	protein-coding
36221	chr11	3580051	3580500	+	0	NA	Intergenic	Intergenic	-8288	NR_126335	101927708		NR_126335	ENSG00000255367	LOC101927708	-	uncharacterized LOC101927708	ncRNA
153169	chr22	23804951	23805250	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	18134	NM_001007468	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
173375	chr4	7909701	7909900	+	0	NA	intron (NM_001371091, intron 1 of 17)	MER5B|DNA|hAT-Charlie	-29201	NM_203423	389199		NM_203423	ENSG00000228919	LOC389199	-	uncharacterized LOC389199	ncRNA
201571	chr6	149324451	149325100	+	0	NA	intron (NM_015093, intron 1 of 8)	intron (NM_015093, intron 1 of 8)	6475	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
111070	chr19	3156301	3157250	+	0	NA	intron (NM_002068, intron 5 of 6)	AluY|SINE|Alu	-1600	NR_110670	100996351		NR_110670	ENSG00000267551	GNA15-DT	-	GNA15 divergent transcript	ncRNA
150937	chr21	44287371	44287730	+	0	NA	exon (NM_000383, exon 4 of 14)	exon (NM_000383, exon 4 of 14)	1674	NM_000383	326		NM_000383	ENSG00000160224	AIRE	AIRE1|APECED|APS1|APSI|PGA1	autoimmune regulator	protein-coding
16662	chr1	155177771	155178130	+	0	NA	intron (NM_001256599, intron 5 of 9)	intron (NM_001256599, intron 5 of 9)	3196	NM_001256601	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
52413	chr12	55767801	55768000	+	0	NA	intron (NM_033082, intron 9 of 10)	(AC)n|Simple_repeat|Simple_repeat	24778	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
211918	chr7	112452321	112452850	+	0	NA	intron (NM_001197079, intron 1 of 11)	intron (NM_001197079, intron 1 of 11)	527	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
21181	chr1	203797471	203797830	+	0	NA	exon (NM_001174108, exon 1 of 1)	exon (NM_001174108, exon 1 of 1)	127	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
145999	chr20	46405621	46407380	+	0	NA	promoter-TSS (NR_146919)	promoter-TSS (NR_146919)	115	NM_001318253	63916		NM_022086	ENSG00000062598	ELMO2	CED-12|CED12|Ced-12A|ELMO-2|VMPI	engulfment and cell motility 2	protein-coding
25189	chr10	5623071	5623550	+	0	NA	Intergenic	Intergenic	-27192	NR_134491	105376382		NR_134491	ENSG00000242147	LASTR	LINC02657	lncRNA associated with SART3 regulation of splicing	ncRNA
215653	chr8	404701	405250	+	0	NA	Intergenic	Intergenic	-1833	NM_012173	26260		NM_012173	ENSG00000147364	FBXO25	FBX25	F-box protein 25	protein-coding
224977	chr9	33083971	33084130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7376	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
43249	chr11	75526871	75527030	+	0	NA	Intergenic	AluJr|SINE|Alu	-1009	NM_030792	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
118524	chr19	36010451	36010750	+	0	NA	exon (NM_198867, exon 6 of 7)	exon (NM_198867, exon 6 of 7)	-1787	NM_001039876	163183		NM_153233	ENSG00000181392	SYNE4	C19orf46|DFNB76|KASH4|Nesp4	spectrin repeat containing nuclear envelope family member 4	protein-coding
189871	chr5	177306051	177306450	+	0	NA	TTS (NM_031300)	TTS (NM_031300)	2451	NM_001271828	27166		NM_013237	ENSG00000169230	PRELID1	CGI-106|PRELI|PX19|SBBI12	PRELI domain containing 1	protein-coding
67693	chr14	73239621	73240380	+	0	NA	intron (NM_173462, intron 2 of 25)	intron (NM_173462, intron 2 of 25)	227	NM_001365907	89932		NM_173462	ENSG00000100767	PAPLN	PPN	papilin, proteoglycan like sulfated glycoprotein	protein-coding
82230	chr16	15030401	15030600	+	0	NA	TTS (NM_001285450).2	TTS (NM_001285450).2	-20103	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
105512	chr17	83107821	83108100	+	0	NA	Intergenic	Intergenic	26814	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
94405	chr17	28981121	28981380	+	0	NA	intron (NM_178860, intron 2 of 16)	intron (NM_178860, intron 2 of 16)	24783	NM_178860	124925		NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
72428	chr15	31480471	31480880	+	0	NA	3' UTR (NM_001382637, exon 13 of 13)	3' UTR (NM_001382637, exon 13 of 13)	153840	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
94891	chr17	31546501	31546980	+	0	NA	Intergenic	L1MC1|LINE|L1	11857	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
3035	chr1	12143001	12143200	+	0	NA	3' UTR (NM_001243, exon 15 of 15)	3' UTR (NM_001243, exon 15 of 15)	-23843	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
48688	chr12	10591101	10591300	+	0	NA	intron (NR_028045, intron 6 of 6)	LTR102_Mam|LTR|ERVL	8635	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
159173	chr3	12815871	12816030	+	0	NA	exon (NM_001162499, exon 9 of 15)	exon (NM_001162499, exon 9 of 15)	19270	NM_012298	23066		NM_012298	ENSG00000144712	CAND2	TIP120B|Tp120b	cullin associated and neddylation dissociated 2 (putative)	protein-coding
27275	chr10	30058471	30058830	+	0	NA	intron (NM_001350021, intron 1 of 4)	intron (NM_001350021, intron 1 of 4)	936	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
192122	chr6	16744271	16744850	+	0	NA	intron (NR_152112, intron 1 of 1)	intron (NR_152112, intron 1 of 1)	15624	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
9951	chr1	54715171	54716550	+	0	NA	promoter-TSS (NM_001291333)	promoter-TSS (NM_001291333)	-1	NM_004623	7268		NM_004623	ENSG00000243725	TTC4	CNS1	tetratricopeptide repeat domain 4	protein-coding
163478	chr3	50652671	50653300	+	0	NA	Intergenic	L2b|LINE|L2	-21942	NM_004947	1795		NM_004947	ENSG00000088538	DOCK3	MOCA|NEDIDHA|PBP	dedicator of cytokinesis 3	protein-coding
98349	chr17	46318721	46319180	+	0	NA	intron (NM_014834, intron 5 of 13).2	L1MB7|LINE|L1	23819	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
104729	chr17	81648121	81648580	+	0	NA	non-coding (NR_110866, exon 4 of 4)	non-coding (NR_110866, exon 4 of 4)	5364	NM_001365725	5148		NM_002602	ENSG00000185527	PDE6G	PDEG|RP57	phosphodiesterase 6G	protein-coding
234727	chrX	21914121	21914250	+	0	NA	Intergenic	AluY|SINE|Alu	-26388	NM_001258423	6611		NM_004595	ENSG00000102172	SMS	MRSR|MRXSSR|SPMSY|SRS|SpS	spermine synthase	protein-coding
26326	chr10	15141321	15141800	+	0	NA	intron (NM_004808, intron 1 of 11)	intron (NM_004808, intron 1 of 11)	13787	NR_036506	100192204		NR_036506	ENSG00000206448	PPIAP30	-	peptidylprolyl isomerase A pseudogene 30	pseudo
151148	chr21	44913771	44914600	+	0	NA	intron (NM_001127491, intron 1 of 15)	intron (NM_001127491, intron 1 of 15)	6714	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
32218	chr10	101805221	101805680	+	0	NA	intron (NM_001142434, intron 6 of 14)	AluSp|SINE|Alu	12994	NM_012215	10724		NM_012215	ENSG00000198408	OGA	MEA5|MGEA5|NCOAT	O-GlcNAcase	protein-coding
63169	chr13	113670701	113670900	+	0	NA	intron (NM_002929, intron 2 of 6)	intron (NM_002929, intron 2 of 6)	3581	NM_002929	6011		NM_002929	ENSG00000185974	GRK1	GPRK1|RHOK|RK	G protein-coupled receptor kinase 1	protein-coding
94198	chr17	28576521	28577780	+	0	NA	promoter-TSS (NM_005165)	promoter-TSS (NM_005165)	-255	NM_005165	230		NM_005165	ENSG00000109107	ALDOC	ALDC	aldolase, fructose-bisphosphate C	protein-coding
237841	chrX	130091701	130093930	+	0	NA	intron (NM_001127197, intron 1 of 8)	intron (NM_001127197, intron 1 of 8)	17682	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
92581	chr17	9235471	9235830	+	0	NA	intron (NM_004822, intron 6 of 6)	MLT1A0|LTR|ERVL-MaLR	-56532	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
225701	chr9	36576701	36577100	+	0	NA	intron (NM_001256693, intron 1 of 15)	intron (NM_001256693, intron 1 of 15)	4005	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
215754	chr8	1976201	1976400	+	0	NA	non-coding (NR_126346, exon 3 of 3)	non-coding (NR_126346, exon 3 of 3)	2623	NM_014867	9920		NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
80368	chr16	2525351	2525880	+	0	NA	intron (NM_001330449, intron 3 of 10)	AluY|SINE|Alu	5244	NM_001330449	51005		NM_015944	ENSG00000162066	AMDHD2	CGI-14	amidohydrolase domain containing 2	protein-coding
42937	chr11	73409671	73410230	+	0	NA	intron (NM_015159, intron 5 of 7)	intron (NM_015159, intron 5 of 7)	33282	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
222668	chr8	141204301	141204930	+	0	NA	Intergenic	L1MEc|LINE|L1	23959	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
75282	chr15	65077821	65078300	+	0	NA	exon (NM_001101362, exon 1 of 1)	exon (NM_001101362, exon 1 of 1)	1314	NM_001101362	390594		NM_001101362	ENSG00000234438	KBTBD13	HCG1645727|NEM6	kelch repeat and BTB domain containing 13	protein-coding
142936	chr20	18590871	18591030	+	0	NA	intron (NM_080820, intron 1 of 5)	intron (NM_080820, intron 1 of 5)	2896	NM_080820	92675		NM_080820	ENSG00000125821	DTD1	C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68	D-aminoacyl-tRNA deacylase 1	protein-coding
99294	chr17	49791501	49791700	+	0	NA	intron (NM_001199155, intron 1 of 13)	AluSq2|SINE|Alu	2919	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
138527	chr2	207474751	207475530	+	0	NA	Intergenic	Intergenic	-54822	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123327	chr19	53586051	53586150	+	0	NA	Intergenic	L1MA5|LINE|L1	17397	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
157748	chr22	46660271	46661050	+	0	NA	intron (NM_001366660, intron 4 of 17)	intron (NM_001366660, intron 4 of 17)	40274	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
208529	chr7	70634751	70635050	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-497244	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
123243	chr19	53157721	53159450	+	0	NA	intron (NM_001172675, intron 1 of 4)	CpG	468	NM_032584	84671		NM_032584	ENSG00000197937	ZNF347	ZNF1111	zinc finger protein 347	protein-coding
24506	chr1	244453401	244454000	+	0	NA	Intergenic	HUERS-P1-int|LTR|ERV1	-1640	NM_001365073	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
96573	chr17	40483801	40484000	+	0	NA	intron (NM_032865, intron 6 of 12)	L2a|LINE|L2	17723	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
41156	chr11	65601971	65602700	+	0	NA	intron (NM_002419, intron 8 of 9)	AluSz|SINE|Alu	-6535	NM_033348	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
156158	chr22	40200551	40201630	+	0	NA	intron (NM_015088, intron 1 of 20)	MIRb|SINE|MIR	23165	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
42552	chr11	71785571	71785730	+	0	NA	Intergenic	Intergenic	28209	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
55272	chr12	102917101	102917600	+	0	NA	promoter-TSS (NM_000277)	promoter-TSS (NM_000277)	-106	NM_000277	5053		NM_000277	ENSG00000171759	PAH	PH|PKU|PKU1	phenylalanine hydroxylase	protein-coding
234671	chrX	20217321	20217980	+	0	NA	intron (NM_004586, intron 2 of 21)	intron (NM_004586, intron 2 of 21)	49259	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
4028	chr1	18941451	18942000	+	0	NA	intron (NM_001136265, intron 1 of 8)	MIRc|SINE|MIR	14951	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
214623	chr7	150731221	150732250	+	0	NA	intron (NM_001199577, intron 3 of 5)	L1M4|LINE|L1	-5613	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
42044	chr11	67452321	67453050	+	0	NA	promoter-TSS (NM_206997)	promoter-TSS (NM_206997)	44	NM_206997	390212		NM_206997	ENSG00000175514	GPR152	PGR5	G protein-coupled receptor 152	protein-coding
228068	chr9	96203751	96204250	+	0	NA	Intergenic	Intergenic	-42463	NR_146524	105376162		NR_146524	ENSG00000232283	HSD17B3-AS1	-	HSD17B3 antisense RNA 1	ncRNA
203638	chr7	968351	968730	+	0	NA	3' UTR (NM_001031617, exon 3 of 3)	3' UTR (NM_001031617, exon 3 of 3)	7009	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
81922	chr16	11748201	11748800	+	0	NA	Intergenic	Intergenic	-5643	NR_136671	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
235757	chrX	48971471	48972900	+	0	NA	promoter-TSS (NM_004979)	promoter-TSS (NM_004979)	-341	NM_004979	3750		NM_004979	ENSG00000102057	KCND1	KV4.1	potassium voltage-gated channel subfamily D member 1	protein-coding
81893	chr16	11712921	11713180	+	0	NA	intron (NM_001303447, intron 5 of 12)	AluSp|SINE|Alu	29807	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
105759	chr18	2772821	2773080	+	0	NA	intron (NM_015295, intron 41 of 47)	MIRb|SINE|MIR	-74056	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
32026	chr10	101015471	101015830	+	0	NA	exon (NM_001195263, exon 11 of 17)	exon (NM_001195263, exon 11 of 17)	13153	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
82431	chr16	16314571	16314980	+	0	NA	Intergenic	AluY|SINE|Alu	-1447	NR_146336	110006323		NR_146336		PKD1P4-NPIPA8	-	PKD1P4-NPIPA8 readthrough	pseudo
213395	chr7	136012701	136013000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-35491	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
782	chr1	1535101	1535300	+	0	NA	TTS (NM_001170536)	TTS (NM_001170536)	5424	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
15304	chr1	149851601	149852670	+	0	NA	promoter-TSS (NM_021059)	promoter-TSS (NM_021059)	-469	NM_021059	126961		NM_021059	ENSG00000203811	H3C14	H3|H3.2|H3/M|H3C13|H3C15|H3F2|H3FM|H3FN|HIST2H3C	H3 clustered histone 14	protein-coding
216426	chr8	19408401	19409250	+	0	NA	intron (NR_148901, intron 8 of 9)	intron (NR_148901, intron 8 of 9)	94849	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
94502	chr17	29361271	29361530	+	0	NA	Intergenic	AluSc|SINE|Alu	-28963	NM_020791	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
159645	chr3	15316421	15316730	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	16011	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
60459	chr13	41041351	41041980	+	0	NA	intron (NM_001370329, intron 1 of 9)	AluJb|SINE|Alu	19721	NM_001370330	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
214724	chr7	151022151	151022450	+	0	NA	intron (NR_133652, intron 4 of 16)	AluJb|SINE|Alu	2199	NM_001317056	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
76210	chr15	73870901	73871100	+	0	NA	Intergenic	MER70C|LTR|ERVL	-2564	NM_001286434	161514		NM_153356	ENSG00000167139	TBC1D21	MgcRabGAP	TBC1 domain family member 21	protein-coding
187989	chr5	149521501	149521700	+	0	NA	intron (NM_001892, intron 3 of 9)	intron (NM_001892, intron 3 of 9)	28765	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
126835	chr2	31138121	31138700	+	0	NA	promoter-TSS (NM_024572)	promoter-TSS (NM_024572)	30	NM_001329096	79623		NM_024572	ENSG00000158089	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
57011	chr12	120583101	120583770	+	0	NA	Intergenic	Intergenic	-2033	NM_015918	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
196366	chr6	43237801	43238400	+	0	NA	Intergenic	L1MEc|LINE|L1	-5381	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
195834	chr6	41368651	41369850	+	0	NA	Intergenic	Intergenic	33642	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
158473	chr22	50731921	50732550	+	0	NA	3' UTR (NM_001372044, exon 24 of 24)	3' UTR (NM_001372044, exon 24 of 24)	5934	NR_134637	105373100		NR_134637	ENSG00000225929	LOC105373100	-	uncharacterized LOC105373100	ncRNA
36420	chr11	4100371	4100530	+	0	NA	intron (NM_001033, intron 1 of 18)	Tigger4a|DNA|TcMar-Tigger	5651	NM_001033	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
227430	chr9	89953351	89953730	+	0	NA	Intergenic	L1PA2|LINE|L1	-15876	NR_109791	101927847		NR_109791		LOC101927847	-	uncharacterized LOC101927847	ncRNA
231270	chr9	130012871	130013030	+	0	NA	intron (NM_001363755, intron 1 of 15)	L1M5|LINE|L1	30239	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
176809	chr4	102534651	102535000	+	0	NA	intron (NM_001382625, intron 5 of 24)	intron (NM_001382625, intron 5 of 24)	-32339	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
201456	chr6	148578121	148578480	+	0	NA	Intergenic	Intergenic	69149	NM_001346509	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
204175	chr7	2449471	2449830	+	0	NA	Intergenic	Intergenic	26733	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
73371	chr15	42496921	42497400	+	0	NA	intron (NM_130798, intron 1 of 6)	AluSx4|SINE|Alu	1526	NM_003825	8773		NM_003825	ENSG00000092531	SNAP23	HsT17016|SNAP-23|SNAP23A|SNAP23B	synaptosome associated protein 23	protein-coding
39163	chr11	57333651	57333950	+	0	NA	intron (NM_003146, intron 3 of 16)	intron (NM_003146, intron 3 of 16)	2092	NM_003146	6749		NM_003146	ENSG00000149136	SSRP1	FACT|FACT80|T160	structure specific recognition protein 1	protein-coding
97950	chr17	45228051	45228350	+	0	NA	intron (NM_005892, intron 1 of 26)	intron (NM_005892, intron 1 of 26)	6315	NM_005892	752		NM_005892	ENSG00000184922	FMNL1	C17orf1|C17orf1B|FHOD4|FMNL|KW-13	formin like 1	protein-coding
73902	chr15	50682551	50683550	+	0	NA	intron (NR_149152, intron 1 of 38)	AluJb|SINE|Alu	3747	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
3676	chr1	16494401	16494900	+	0	NA	Intergenic	Intergenic	-1949	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
14960	chr1	147928081	147929430	+	0	NA	intron (NM_016334, intron 1 of 13)	CpG	335	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
126769	chr2	30251101	30251550	+	0	NA	intron (NM_030915, intron 2 of 2)	MER3|DNA|hAT-Charlie	19791	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
231543	chr9	131470721	131470980	+	0	NA	exon (NM_001384822, exon 14 of 31)	exon (NM_001384822, exon 14 of 31)	-14815	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
127414	chr2	42109051	42109650	+	0	NA	Intergenic	L2a|LINE|L2	-60003	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
19507	chr1	175194371	175194730	+	0	NA	Intergenic	MIRb|SINE|MIR	-1563	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
65430	chr14	51094911	51095900	+	0	NA	5' UTR (NM_052978, exon 1 of 7)	5' UTR (NM_052978, exon 1 of 7)	299	NM_052978	114088		NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding
35267	chr11	877601	877900	+	0	NA	intron (NM_001142674, intron 11 of 13)	MSTC|LTR|ERVL-MaLR	33060	NM_001142676	66005		NM_023947	ENSG00000177830	CHID1	GL008|SI-CLP|SICLP	chitinase domain containing 1	protein-coding
143005	chr20	20547521	20547780	+	0	NA	intron (NM_020343, intron 23 of 39)	(GT)n|Simple_repeat|Simple_repeat	164994	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
86758	chr16	67657401	67657600	+	0	NA	TTS (NM_001013838)	TTS (NM_001013838)	2760	NM_001082486	65057		NM_022914	ENSG00000102977	ACD	PIP1|PTOP|TINT1|TPP1	ACD shelterin complex subunit and telomerase recruitment factor	protein-coding
108544	chr18	74498071	74498250	+	0	NA	5' UTR (NM_001370249, exon 3 of 14)	5' UTR (NM_001370249, exon 3 of 14)	-1186	NM_001370250	55748		NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	carnosine dipeptidase 2	protein-coding
83496	chr16	27423851	27424150	+	0	NA	intron (NM_181079, intron 2 of 9)	L1ME3E|LINE|L1	-3271	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
89776	chr16	89470421	89471980	+	0	NA	intron (NM_001256182, intron 1 of 13)	FLAM_C|SINE|Alu	19361	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
130140	chr2	74843851	74844550	+	0	NA	intron (NM_001371525, intron 1 of 17)	MIR3|SINE|MIR	9030	NM_001371525	3099		NM_000189	ENSG00000159399	HK2	HKII|HXK2	hexokinase 2	protein-coding
109762	chr19	1121751	1122400	+	0	NA	intron (NM_001100122, intron 8 of 28).2	intron (NM_001100122, intron 8 of 28).2	10146	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
40203	chr11	63235271	63236550	+	0	NA	Intergenic	L1PA5|LINE|L1	-6258	NM_199352	387601		NM_199352	ENSG00000196600	SLC22A25	HIMTP|UST6	solute carrier family 22 member 25	protein-coding
55625	chr12	107028671	107028830	+	0	NA	intron (NM_004075, intron 1 of 12)	MER20B|DNA|hAT-Charlie	-41584	NM_025198	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
230646	chr9	128691471	128691700	+	0	NA	intron (NM_001374326, intron 3 of 8)	intron (NM_001374326, intron 3 of 8)	1611	NM_001248001	6418		NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|MRD58|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
14995	chr1	148120521	148120800	+	0	NA	exon (NM_001101663, exon 10 of 24)	exon (NM_001101663, exon 10 of 24)	31621	NM_001101663	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
196398	chr6	43286051	43286350	+	0	NA	3' UTR (NM_032538, exon 15 of 15)	3' UTR (NM_032538, exon 15 of 15)	-12060	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
149858	chr21	35222101	35222300	+	0	NA	Intergenic	Intergenic	-172898	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
129683	chr2	70440551	70441250	+	0	NA	Intergenic	Intergenic	40740	NR_046798	100874273		NR_046798	ENSG00000224606	TGFA-IT1	-	TGFA intronic transcript 1	ncRNA
164091	chr3	56556421	56558300	+	0	NA	intron (NM_001353160, intron 1 of 18)	intron (NM_001353160, intron 1 of 18)	185	NM_001141947	285331		NM_001012506	ENSG00000180376	CCDC66	-	coiled-coil domain containing 66	protein-coding
234358	chrX	15674571	15676180	+	0	NA	promoter-TSS (NR_160542)	promoter-TSS (NR_160542)	-83	NR_160545	114004397		NR_160544		CA5BP1-CA5B	-	CA5BP1-CA5B readthrough	ncRNA
41398	chr11	66011721	66012630	+	0	NA	exon (NM_001323, exon 1 of 3)	exon (NM_001323, exon 1 of 3)	167	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
147446	chr20	58978671	58979030	+	0	NA	Intergenic	MIRb|SINE|MIR	-2406	NM_198976	51497		NM_016397	ENSG00000101158	NELFCD	HSPC130|NELF-C|NELF-D|TH1|TH1L	negative elongation factor complex member C/D	protein-coding
230990	chr9	129493951	129494800	+	0	NA	intron (NR_038955, intron 2 of 4)	MER115|DNA|hAT-Tip100	5715	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
58252	chr12	128798621	128799080	+	0	NA	intron (NM_145648, intron 7 of 7)	intron (NM_145648, intron 7 of 7)	25108	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
138845	chr2	216516751	216517030	+	0	NA	Intergenic	Intergenic	18046	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
114749	chr19	13276401	13276600	+	0	NA	intron (NM_023035, intron 23 of 46)	L2|LINE|L2	126089	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
123570	chr19	54450551	54450930	+	0	NA	intron (NM_001375640, intron 1 of 14).3	AluSp|SINE|Alu	1083	NM_001375640	114823		NM_052925	ENSG00000167615	LENG8	pp13842	leukocyte receptor cluster member 8	protein-coding
153285	chr22	24163821	24164080	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-17537	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
138370	chr2	203986951	203987500	+	0	NA	Intergenic	Intergenic	50462	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
173692	chr4	15615871	15616030	+	0	NA	intron (NM_012161, intron 9 of 10)	LTR12C|LTR|ERV1	39407	NM_012161	26234		NM_012161	ENSG00000118564	FBXL5	FBL4|FBL5|FLR1	F-box and leucine rich repeat protein 5	protein-coding
54787	chr12	94230271	94231000	+	0	NA	intron (NM_005761, intron 9 of 30)	intron (NM_005761, intron 9 of 30)	-31984	NR_037687	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
142832	chr20	17525621	17525900	+	0	NA	intron (NM_001278608, intron 3 of 9)	MLT1J|LTR|ERVL-MaLR	5619	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
170218	chr3	184169451	184169550	+	0	NA	intron (NM_004423, intron 13 of 14)	AluSx|SINE|Alu	-5346	NM_001025205	1173		NM_004068	ENSG00000161203	AP2M1	AP50|CLAPM1|MRD60|mu2	adaptor related protein complex 2 subunit mu 1	protein-coding
10060	chr1	58726371	58726730	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-26488	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
74117	chr15	55108971	55109230	+	0	NA	Intergenic	Intergenic	52353	NR_135679	105370829		NR_135679	ENSG00000260937	LOC105370829	-	uncharacterized LOC105370829	ncRNA
129784	chr2	71251051	71251150	+	0	NA	Intergenic	L1PA6|LINE|L1	-23997	NM_020459	400961		NM_020459	ENSG00000124374	PAIP2B	-	poly(A) binding protein interacting protein 2B	protein-coding
187548	chr5	142774951	142775050	+	0	NA	intron (NM_001349547, intron 1 of 21)	L1MC2|LINE|L1	3773	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
144154	chr20	34053771	34053930	+	0	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	4731	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
207873	chr7	50376021	50376280	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	57102	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
105931	chr18	3525871	3526800	+	0	NA	intron (NM_001242763, intron 8 of 10)	intron (NM_001242763, intron 8 of 10)	60085	NR_110429	100505592		NR_110428	ENSG00000266835	GAPLINC	LINC01540	gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA	ncRNA
58434	chr12	131946571	131946950	+	0	NA	TTS (NM_001002019)	TTS (NM_001002019)	-3182	NM_015409	57634		NM_015409	ENSG00000183495	EP400	CAGH32|P400|TNRC12	E1A binding protein p400	protein-coding
110412	chr19	1957071	1957530	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	-2751	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
150492	chr21	42737901	42738700	+	0	NA	intron (NM_001001576, intron 3 of 14)	intron (NM_001001576, intron 3 of 14)	41694	NR_135517	101928311		NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
228096	chr9	96436171	96436930	+	0	NA	Intergenic	MER77|LTR|ERVL	-13619	NM_014282	22927		NM_014282	ENSG00000130956	HABP4	IHABP-4|IHABP4|Ki-1/57|SERBP1L	hyaluronan binding protein 4	protein-coding
140762	chr2	234544051	234544450	+	0	NA	Intergenic	Intergenic	-47169	NM_001282431	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
100858	chr17	64236901	64237180	+	0	NA	intron (NM_001288732, intron 1 of 11)	L2b|LINE|L2	-6306	NM_001288733	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
9292	chr1	46437721	46438180	+	0	NA	intron (NR_045483, intron 4 of 8)	MIRb|SINE|MIR	4123	NR_045483	729041		NR_045483		FAAHP1	FAAH-OUT|FAAHOUT|LINC00505	fatty acid amide hydrolase pseudogene 1	pseudo
59200	chr13	22162971	22163330	+	0	NA	Intergenic	L1MB7|LINE|L1	-47135	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
10095	chr1	58929701	58930000	+	0	NA	Intergenic	Intergenic	-90626	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
32396	chr10	102430301	102430880	+	0	NA	intron (NM_024040, intron 1 of 8)	intron (NM_024040, intron 1 of 8)	1984	NM_024040	79004		NM_024040	ENSG00000107874	CUEDC2	C10orf66|bA18I14.5	CUE domain containing 2	protein-coding
232675	chr9	136514121	136514450	+	0	NA	intron (NM_017617, intron 13 of 33)	intron (NM_017617, intron 13 of 33)	5341	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
66184	chr14	60722451	60722780	+	0	NA	intron (NM_017420, intron 1 of 2)	CpG	1736	NM_017420	51804		NM_017420	ENSG00000100625	SIX4	AREC3	SIX homeobox 4	protein-coding
160142	chr3	20064571	20065130	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	24404	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
22562	chr1	222634051	222634900	+	0	NA	intron (NM_001324062, intron 6 of 28)	intron (NM_001324062, intron 6 of 28)	-9828	NM_001324065	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
118275	chr19	35273651	35273750	+	0	NA	intron (NM_001321150, intron 5 of 7)	AluJr|SINE|Alu	4738	NM_207291	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
146324	chr20	49225401	49225700	+	0	NA	intron (NM_017895, intron 6 of 20)	AluYj4|SINE|Alu	6134	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
45897	chr11	120326671	120327130	+	0	NA	intron (NM_001198675, intron 1 of 1)	intron (NM_001198675, intron 1 of 1)	1601	NM_001198675	219902		NM_174926	ENSG00000181264	TLCD5	TMEM136	TLC domain containing 5	protein-coding
21166	chr1	203762551	203762850	+	0	NA	Intergenic	Intergenic	-2483	NM_001136190	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
75596	chr15	67098151	67099300	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	-26991	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
58772	chr12	132709951	132711800	+	0	NA	promoter-TSS (NM_138575)	promoter-TSS (NM_138575)	33	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
117329	chr19	19519601	19520200	+	0	NA	intron (NM_015965, intron 1 of 4)	intron (NM_015965, intron 1 of 4)	3675	NM_015965	51079		NM_015965	ENSG00000186010	NDUFA13	B16.6|CDA016|CGI-39|GRIM-19|GRIM19|MC1DN28	NADH:ubiquinone oxidoreductase subunit A13	protein-coding
110741	chr19	2330751	2331330	+	0	NA	intron (NM_152988, intron 1 of 14)	intron (NM_152988, intron 1 of 14)	2356	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
74319	chr15	58410001	58410950	+	0	NA	Intergenic	Intergenic	-21516	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
220193	chr8	95295421	95295850	+	0	NA	intron (NR_038206, intron 1 of 4)	intron (NR_038206, intron 1 of 4)	-26434	NM_177965	157657		NM_177965	ENSG00000156172	CFAP418	BBS21|C8orf37|CORD16|FAP418|MOT25|RP64|smalltalk	cilia and flagella associated protein 418	protein-coding
160099	chr3	19030401	19030600	+	0	NA	Intergenic	L1MA3|LINE|L1	-118010	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
225715	chr9	36762851	36763350	+	0	NA	Intergenic	Intergenic	60499	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA
129266	chr2	68387401	68388750	+	0	NA	intron (NM_002664, intron 5 of 8)	intron (NM_002664, intron 5 of 8)	22793	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
236128	chrX	57821771	57822080	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	88533	NM_007156	7789		NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger X-linked duplicated A	protein-coding
171672	chr3	197715121	197715380	+	0	NA	intron (NM_014687, intron 2 of 19)	AluSp|SINE|Alu	21654	NM_014687	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
121590	chr19	47335421	47336100	+	0	NA	intron (NM_001271749, intron 1 of 1)	AluY|SINE|Alu	-1335	NM_018485	27202		NM_018485	ENSG00000134830	C5AR2	C5L2|GPF77|GPR77	complement C5a receptor 2	protein-coding
182748	chr5	68279701	68280780	+	0	NA	intron (NM_181523, intron 5 of 15)	intron (NM_181523, intron 5 of 15)	-8279	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
37700	chr11	29365151	29365250	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-229213	NR_149107	105376606		NR_149106	ENSG00000255117	LINC02546	-	long intergenic non-protein coding RNA 2546	ncRNA
22291	chr1	212833901	212834300	+	0	NA	intron (NM_001024601, intron 2 of 2)	LTR106_Mam|LTR|LTR	13549	NM_001024601	149643		NM_001024601	ENSG00000185523	SPATA45	C1orf227	spermatogenesis associated 45	protein-coding
222818	chr8	142473651	142474150	+	0	NA	intron (NM_001702, intron 2 of 30)	intron (NM_001702, intron 2 of 30)	24251	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
185370	chr5	127586251	127586550	+	0	NA	Intergenic	MIR|SINE|MIR	-62621	NM_001048252	613212		NM_001048252	ENSG00000205279	CTXN3	KABE	cortexin 3	protein-coding
152989	chr22	23147901	23148680	+	0	NA	intron (NM_004914, intron 2 of 10)	intron (NM_004914, intron 2 of 10)	2813	NR_146295	9609		NM_004914	ENSG00000100228	RAB36	-	RAB36, member RAS oncogene family	protein-coding
166701	chr3	120594371	120594730	+	0	NA	Intergenic	MER66B|LTR|ERV1	-1786	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
228404	chr9	99167271	99167430	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	54592	NM_033087	85365		NM_033087	ENSG00000119523	ALG2	CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2	ALG2 alpha-1,3/1,6-mannosyltransferase	protein-coding
183106	chr5	74635001	74635630	+	0	NA	exon (NM_001256574, exon 3 of 4)	exon (NM_001256574, exon 3 of 4)	-4708	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
218451	chr8	48006801	48007280	+	0	NA	Intergenic	AluY|SINE|Alu	-1391	NM_003350	7336		NM_003350	ENSG00000169139	UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin conjugating enzyme E2 V2	protein-coding
185845	chr5	132476901	132480890	+	0	NA	Intergenic	Intergenic	11878	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
50604	chr12	48672551	48673080	+	0	NA	intron (NM_017822, intron 4 of 9)	AluSx1|SINE|Alu	-5222	NR_002951	677794		NR_002951	ENSG00000207313	SNORA2B	ACA2b	small nucleolar RNA, H/ACA box 2B	snoRNA
91162	chr17	3787121	3787600	+	0	NA	intron (NM_002208, intron 1 of 30)	AluSx|SINE|Alu	13828	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
120943	chr19	45681201	45682330	+	0	NA	exon (NM_001308418, exon 13 of 13)	exon (NM_001308418, exon 13 of 13)	-6757	NR_037512	100500845		NR_037512	ENSG00000283212	MIR642B	mir-642b	microRNA 642b	ncRNA
92566	chr17	9004321	9005030	+	0	NA	Intergenic	CpG	-16835	NM_004822	9423		NM_004822	ENSG00000065320	NTN1	MRMV4|NET1|NTN1L	netrin 1	protein-coding
52919	chr12	57237321	57237730	+	0	NA	intron (NM_020142, intron 1 of 4)	intron (NM_020142, intron 1 of 4)	3167	NM_020142	56901		NM_020142	ENSG00000185633	NDUFA4L2	COXFA4L2|MISTRH|NUOMS	NDUFA4 mitochondrial complex associated like 2	protein-coding
70442	chr14	102048651	102048750	+	0	NA	intron (NM_001376, intron 74 of 77)	intron (NM_001376, intron 74 of 77)	38344	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
757	chr1	1503401	1503800	+	0	NA	Intergenic	Intergenic	-8562	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
116102	chr19	17291551	17291650	+	0	NA	TTS (NM_024527)	TTS (NM_024527)	9699	NM_001278444	126549		NM_152363	ENSG00000160117	ANKLE1	ANKRD41|LEM3|LEMD6	ankyrin repeat and LEM domain containing 1	protein-coding
89256	chr16	88655521	88656430	+	0	NA	intron (NM_002461, intron 5 of 9)	CpG	-4922	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
178568	chr4	151122451	151123130	+	0	NA	intron (NM_001378121, intron 20 of 20)	MIR|SINE|MIR	18963	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
155727	chr22	39136151	39136450	+	0	NA	intron (NM_001346743, intron 4 of 5)	MLT1F|LTR|ERVL-MaLR	16380	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
86278	chr16	58514701	58516980	+	0	NA	exon (NM_001160305, exon 2 of 8)	exon (NM_001160305, exon 2 of 8)	323	NM_001160305	79918		NM_024860	ENSG00000103037	SETD6	-	SET domain containing 6, protein lysine methyltransferase	protein-coding
168372	chr3	141903451	141904230	+	0	NA	intron (NM_001679, intron 2 of 6)	AluSp|SINE|Alu	27197	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
150985	chr21	44338311	44339900	+	0	NA	promoter-TSS (NM_001271442)	promoter-TSS (NM_001271442)	285	NM_004928	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
185527	chr5	131338871	131339780	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1ME1|LINE|L1	75272	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
149677	chr21	33703801	33704200	+	0	NA	intron (NM_001331010, intron 1 of 38)	intron (NM_001331010, intron 1 of 38)	61499	NM_001331009	6453		NM_003024	ENSG00000205726	ITSN1	ITSN|SH3D1A|SH3P17	intersectin 1	protein-coding
217344	chr8	27748421	27748730	+	0	NA	exon (NM_001304530, exon 5 of 7)	exon (NM_001304530, exon 5 of 7)	24065	NM_001304532	55246		NM_018246	ENSG00000147419	CCDC25	-	coiled-coil domain containing 25	protein-coding
116474	chr19	18101771	18102130	+	0	NA	intron (NM_015016, intron 1 of 26)	AluY|SINE|Alu	-3134	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
90665	chr17	1705071	1705230	+	0	NA	3' UTR (NM_001164407, exon 4 of 4)	3' UTR (NM_001164407, exon 4 of 4)	5227	NM_001164407	727910		NM_001164407	ENSG00000185561	TLCD2	-	TLC domain containing 2	protein-coding
41028	chr11	65442721	65443450	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	-1373	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
233290	chr9	137317351	137317650	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-15229	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
40726	chr11	64811871	64812030	+	0	NA	promoter-TSS (NM_130804)	promoter-TSS (NM_130804)	-656	NM_130804	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
173918	chr4	25246321	25246950	+	0	NA	intron (NM_018323, intron 1 of 9)	LTR12C|LTR|ERV1	12602	NM_018323	55300		NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
64761	chr14	34587621	34588280	+	0	NA	intron (NR_159357, intron 8 of 12)	AluSx|SINE|Alu	-31561	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
48332	chr12	9049221	9049880	+	0	NA	Intergenic	Intergenic	15520	NR_034140	253128		NM_182550	ENSG00000214851	LINC00612	C12orf33	long intergenic non-protein coding RNA 612	ncRNA
17381	chr1	156591251	156592600	+	0	NA	exon (NM_144772, exon 1 of 6)	exon (NM_144772, exon 1 of 6)	149	NM_144772	128240		NM_144772	ENSG00000163382	NAXE	AIBP|APOA1BP|PEBEL|YJEFN1	NAD(P)HX epimerase	protein-coding
38767	chr11	47165301	47165500	+	0	NA	3' UTR (NM_001242832, exon 15 of 15)	3' UTR (NM_001242832, exon 15 of 15)	11479	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
69704	chr14	98187151	98187880	+	0	NA	Intergenic	Intergenic	-209391	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
211375	chr7	105005921	105006180	+	0	NA	Intergenic	AluY|SINE|Alu	8091	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
165211	chr3	72847671	72849180	+	0	NA	promoter-TSS (NM_018130)	promoter-TSS (NM_018130)	20	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
178596	chr4	151882321	151882750	+	0	NA	Intergenic	Intergenic	-121512	NM_001363341	5188		NM_004564	ENSG00000059691	GATB	COXPD41|HSPC199|PET112|PET112L	glutamyl-tRNA amidotransferase subunit B	protein-coding
90690	chr17	1730951	1731050	+	0	NA	intron (NM_001163809, intron 3 of 9)	intron (NM_001163809, intron 3 of 9)	6296	NM_001163809	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
180447	chr5	10601101	10601800	+	0	NA	intron (NM_001164440, intron 1 of 3)	L2c|LINE|L2	37380	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
10473	chr1	66342651	66343350	+	0	NA	intron (NM_001037340, intron 6 of 14)	AluSz6|SINE|Alu	10892	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
228172	chr9	97221171	97222170	+	0	NA	intron (NR_136286, intron 1 of 17)	CpG	-16756	NR_036526	100499484		NR_036526	ENSG00000254876	SUGT1P4-STRA6LP	-	SUGT1P4-STRA6LP readthrough	pseudo
211840	chr7	108527851	108528150	+	0	NA	intron (NM_001256011, intron 1 of 10)	intron (NM_001256011, intron 1 of 10)	178	NM_001256011	50640		NM_015723	ENSG00000135241	PNPLA8	IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma	patatin like phospholipase domain containing 8	protein-coding
202171	chr6	155338271	155338880	+	0	NA	Intergenic	L1PB1|LINE|L1	-24091	NR_146725	51106		NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding
113483	chr19	10008551	10008730	+	0	NA	intron (NM_015719, intron 1 of 66)	intron (NM_015719, intron 1 of 66)	1864	NM_015719	50509		NM_015719	ENSG00000080573	COL5A3	-	collagen type V alpha 3 chain	protein-coding
10325	chr1	64894721	64895130	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	71624	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
9963	chr1	54800821	54801830	+	0	NA	promoter-TSS (NM_001114108)	promoter-TSS (NM_001114108)	-2	NM_001114108	55001		NM_017904	ENSG00000006555	TTC22	-	tetratricopeptide repeat domain 22	protein-coding
114776	chr19	13758821	13759080	+	0	NA	exon (NM_001320569, exon 6 of 9)	exon (NM_001320569, exon 6 of 9)	-5572	NM_032285	84245		NM_032285	ENSG00000037757	MRI1	M1Pi|MRDI|MTNA|Ypr118w	methylthioribose-1-phosphate isomerase 1	protein-coding
195007	chr6	35410751	35411360	+	0	NA	5' UTR (NM_001171820, exon 3 of 6)	5' UTR (NM_001171820, exon 3 of 6)	-41283	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
147479	chr20	59144271	59145000	+	0	NA	intron (NM_001384354, intron 1 of 7)	intron (NM_001384354, intron 1 of 7)	-19186	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
23236	chr1	227772301	227772500	+	0	NA	intron (NR_136655, intron 5 of 5)	L1MB3|LINE|L1	-14412	NR_168381	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
100677	chr17	63771101	63771530	+	0	NA	intron (NM_020198, intron 1 of 12)	MER2|DNA|TcMar-Tigger	2282	NM_020198	57003		NM_020198	ENSG00000108588	CCDC47	GK001|MSTP041|THNS	coiled-coil domain containing 47	protein-coding
230679	chr9	128720471	128721150	+	0	NA	TTS (NM_001318015)	TTS (NM_001318015)	3317	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
93454	chr17	18681501	18682930	+	0	NA	promoter-TSS (NM_001368135)	promoter-TSS (NM_001368135)	99	NM_001368135	2310		NM_001368134	ENSG00000240445	FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B	protein-coding
7794	chr1	36245651	36245750	+	0	NA	intron (NM_001321471, intron 2 of 12)	intron (NM_001321471, intron 2 of 12)	21257	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
71055	chr14	104803301	104803930	+	0	NA	3' UTR (NM_001137601, exon 1 of 1)	3' UTR (NM_001137601, exon 1 of 1)	2514	NM_001137601	100128927		NM_001137601	ENSG00000179627	ZBTB42	LCCS6|ZNF925	zinc finger and BTB domain containing 42	protein-coding
166639	chr3	119700451	119701180	+	0	NA	Intergenic	Intergenic	-2207	NM_001320317	89876		NM_033364	ENSG00000183833	CFAP91	AAT1|AAT1alpha|C3orf15|CaM-IP2|MAATS1|SPATA26|SPGF51	cilia and flagella associated protein 91	protein-coding
1164	chr1	2209501	2210130	+	0	NA	intron (NM_001282670, intron 2 of 7)	intron (NM_001282670, intron 2 of 7)	-2082	NM_001146310	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
32158	chr10	101374851	101375150	+	0	NA	intron (NM_003939, intron 1 of 13)	intron (NM_003939, intron 1 of 13)	20835	NM_003939	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
220342	chr8	99087051	99087150	+	0	NA	intron (NR_047582, intron 4 of 8)	L1PA4|LINE|L1	73826	NM_015243	157680		NM_015243	ENSG00000132549	VPS13B	BLTP5B|CHS1|COH1	vacuolar protein sorting 13 homolog B	protein-coding
83285	chr16	24048951	24049680	+	0	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	-153801	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
152548	chr22	20997771	20998180	+	0	NA	3' UTR (NM_006767, exon 21 of 21)	3' UTR (NM_006767, exon 21 of 21)	-3947	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
123821	chr19	55196871	55197030	+	0	NA	intron (NM_001161440, intron 7 of 17)	intron (NM_001161440, intron 7 of 17)	12551	NM_002842	5794		NM_002842	ENSG00000080031	PTPRH	R-PTP-H|SAP1	protein tyrosine phosphatase receptor type H	protein-coding
191522	chr6	11366271	11367050	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	15688	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
226205	chr9	65385671	65385930	+	0	NA	Intergenic	SST1|Satellite|centr	-100591	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
125181	chr2	10080801	10081400	+	0	NA	promoter-TSS (NM_001037160)	promoter-TSS (NM_001037160)	-689	NM_001037160	192668		NM_001037160	ENSG00000205795	CYS1	-	cystin 1	protein-coding
53366	chr12	64664221	64664680	+	0	NA	intron (NR_040718, intron 1 of 3)	AluYg6|SINE|Alu	-41845	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
181002	chr5	35829271	35829800	+	0	NA	Intergenic	Intergenic	-27356	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
57640	chr12	122515121	122515480	+	0	NA	intron (NR_036436, intron 5 of 9)	intron (NR_036436, intron 5 of 9)	11636	NR_036435	65117		NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding
154328	chr22	32142771	32143530	+	0	NA	Intergenic	Intergenic	16153	NM_001010859	150297		NM_001010859	ENSG00000205856	C22orf42	dJ90G24.6	chromosome 22 open reading frame 42	protein-coding
137071	chr2	190907651	190908130	+	0	NA	intron (NM_014905, intron 6 of 17)	intron (NM_014905, intron 6 of 17)	27069	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
162095	chr3	46898171	46899130	+	0	NA	intron (NM_001184744, intron 7 of 14)	CpG-19793	16401	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
8216	chr1	39677521	39677780	+	0	NA	TTS (NM_001282397)	TTS (NM_001282397)	-5612	NM_032526	84618		NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
184682	chr5	108521901	108522180	+	0	NA	Intergenic	Intergenic	-139942	NM_001163315	64839		NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
199533	chr6	118776551	118777680	+	0	NA	Intergenic	L1MB7|LINE|L1	-5593	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
196730	chr6	45296671	45297030	+	0	NA	intron (NM_001350329, intron 2 of 10)	L1PB1|LINE|L1	-31467	NM_001015051	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
129298	chr2	68514551	68514650	+	0	NA	intron (NM_173545, intron 5 of 9)	L1MEb|LINE|L1	47015	NM_173545	200558		NM_173545	ENSG00000169621	APLF	APFL|C2orf13|PALF|Xip1|ZCCHH1	aprataxin and PNKP like factor	protein-coding
55752	chr12	108513321	108513850	+	0	NA	Intergenic	MIRb|SINE|MIR	-1692	NM_007076	11153		NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain protein adenylyltransferase	protein-coding
160393	chr3	28050821	28051300	+	0	NA	Intergenic	Intergenic	-190559	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
30744	chr10	84181521	84181780	+	0	NA	intron (NM_207373, intron 2 of 2)	AluJr|SINE|Alu	7849	NM_207373	387695		NM_207373	ENSG00000188373	GPR15LG	AP-57|AP57|C10orf99|CSBF|GPR15L|UNQ1833	G protein-coupled receptor 15 ligand	protein-coding
177291	chr4	109588051	109588580	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	28069	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
93232	chr17	17847901	17848450	+	0	NA	intron (NM_001082968, intron 14 of 14)	intron (NM_001082968, intron 14 of 14)	-11164	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
117023	chr19	18920671	18920830	+	0	NA	intron (NM_019070, intron 2 of 12)	MIRc|SINE|MIR	1035	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
32851	chr10	110061651	110062400	+	0	NA	intron (NM_016824, intron 1 of 14)	AluJb|SINE|Alu	-53644	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
33331	chr10	116721501	116721700	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	20966	NM_025015	259217		NM_025015	ENSG00000165868	HSPA12A	-	heat shock protein family A (Hsp70) member 12A	protein-coding
34956	chr11	487101	487300	+	0	NA	intron (NR_138046, intron 5 of 12)	intron (NR_138046, intron 5 of 12)	19568	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
228229	chr9	97910021	97911350	+	0	NA	intron (NM_001371657, intron 3 of 5)	intron (NM_001371657, intron 3 of 5)	11496	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
189480	chr5	173087771	173088130	+	0	NA	intron (NM_153607, intron 3 of 8)	AluSx3|SINE|Alu	31598	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
229939	chr9	126651051	126651380	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	37287	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
79380	chr16	651571	652930	+	0	NA	intron (NM_145294, intron 9 of 40)	intron (NM_145294, intron 9 of 40)	2885	NM_145294	197335		NM_145294	ENSG00000161996	WDR90	C16orf15|C16orf16|C16orf17|C16orf18|C16orf19|POC16	WD repeat domain 90	protein-coding
87987	chr16	80660921	80661180	+	0	NA	intron (NM_152342, intron 2 of 6)	intron (NM_152342, intron 2 of 6)	-88242	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
35494	chr11	1521001	1521200	+	0	NA	Intergenic	L1MEg|LINE|L1	-34321	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
28397	chr10	47583201	47583400	+	0	NA	non-coding (NR_033407, exon 1 of 4)	non-coding (NR_033407, exon 1 of 4)	119	NR_033407	1517		NR_033407		CTSLP2	CTSL1P2|CTSL1P5|CTSL1P7|CTSLL2|CTSLL5|CTSLL7|CTSLP5|CTSLP7|bA144G6.6|bA342C24.4	cathepsin L pseudogene 2	pseudo
27456	chr10	31970571	31970830	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-41824	NM_001270695	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
136234	chr2	174600801	174601000	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-2669	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
221344	chr8	123162201	123162800	+	0	NA	intron (NM_001363151, intron 19 of 19)	intron (NM_001363151, intron 19 of 19)	-16547	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
40522	chr11	64288701	64288900	+	0	NA	intron (NM_020155, intron 6 of 6)	intron (NM_020155, intron 6 of 6)	-2502	NR_133660	50801		NM_016611	ENSG00000182450	KCNK4	FHEIG|K2p4.1|TRAAK|TRAAK1	potassium two pore domain channel subfamily K member 4	protein-coding
190524	chr5	180617871	180618230	+	0	NA	intron (NM_001354989, intron 21 of 29)	intron (NM_001354989, intron 21 of 29)	-26551	NM_052863	92304		NM_052863	ENSG00000161055	SCGB3A1	HIN-1|HIN1|LU105|PnSP-2|UGRP2	secretoglobin family 3A member 1	protein-coding
103543	chr17	78659851	78660150	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-27943	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
187567	chr5	142793651	142793750	+	0	NA	intron (NM_001349547, intron 1 of 21)	AluSz6|SINE|Alu	22473	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
176966	chr4	103201701	103201900	+	0	NA	Intergenic	L2a|LINE|L2	-3457	NM_001813	1062		NM_001813	ENSG00000138778	CENPE	CENP-E|KIF10|MCPH13|PPP1R61	centromere protein E	protein-coding
26253	chr10	14653451	14654750	+	0	NA	intron (NM_001282695, intron 2 of 5)	Charlie8|DNA|hAT-Charlie	-49699	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
112338	chr19	5917501	5918150	+	0	NA	exon (NM_007322, exon 16 of 17)	exon (NM_007322, exon 16 of 17)	3571	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
206932	chr7	38231171	38231530	+	0	NA	TTS (NM_001363340)	TTS (NM_001363340)	42297	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
180004	chr5	969471	969630	+	0	NA	Intergenic	Intergenic	27790	NR_104614	100506688		NM_001242737	ENSG00000215246	LINC02982	-	long intergenic non-protein coding RNA 2982	ncRNA
153102	chr22	23532601	23532800	+	0	NA	Intergenic	Intergenic	-5402	NR_109832	101978785		NR_109832		PCAT14	-	prostate cancer associated transcript 14	ncRNA
235700	chrX	48830921	48831880	+	0	NA	exon (NM_013271, exon 3 of 3)	exon (NM_013271, exon 3 of 3)	4210	NM_013271	27344		NM_013271	ENSG00000102109	PCSK1N	BigLEN|PEN|PROSAAS|SAAS|SCG8|SgVIII	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding
178792	chr4	153487521	153489880	+	0	NA	intron (NM_015196, intron 3 of 34)	MLT1C|LTR|ERVL-MaLR	22340	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
169255	chr3	157159901	157161800	+	0	NA	promoter-TSS (NM_020307)	promoter-TSS (NM_020307)	-703	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
15122	chr1	148672621	148673300	+	0	NA	intron (NM_001364007, intron 1 of 4)	intron (NM_001364007, intron 1 of 4)	6786	NM_001364007	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
96605	chr17	40545101	40545500	+	0	NA	Intergenic	AluY|SINE|Alu	15094	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
29088	chr10	68048701	68048900	+	0	NA	intron (NM_001278185, intron 3 of 23)	L1MC1|LINE|L1	26483	NM_015601	26091		NM_015601	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
195444	chr6	36970151	36971000	+	0	NA	intron (NM_001271641, intron 9 of 11)	intron (NM_001271641, intron 9 of 11)	15621	NM_001271641	23787		NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
18535	chr1	162065421	162065800	+	0	NA	Intergenic	Intergenic	-4081	NM_014697	9722		NM_014697	ENSG00000198929	NOS1AP	6330408P19Rik|CAPON|NPHS22	nitric oxide synthase 1 adaptor protein	protein-coding
126445	chr2	28134651	28135630	+	0	NA	intron (NM_199193, intron 8 of 13)	intron (NM_199193, intron 8 of 13)	71821	NR_120504	100505736		NR_120504		LOC100505736	-	uncharacterized LOC100505736	ncRNA
227375	chr9	89495721	89496090	+	0	NA	promoter-TSS (NM_001371198)	promoter-TSS (NM_001371198)	-249	NM_001371195	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
114572	chr19	12903071	12903230	+	0	NA	intron (NM_001105578, intron 3 of 5)	AluYm1|SINE|Alu	11990	NM_000159	2639		NM_000159	ENSG00000105607	GCDH	ACAD5|GCD	glutaryl-CoA dehydrogenase	protein-coding
180331	chr5	6582821	6583430	+	0	NA	promoter-TSS (NR_024424)	promoter-TSS (NR_024424)	-151	NR_024424	255167		NR_024423	ENSG00000250056	LINC01018	SRHC	long intergenic non-protein coding RNA 1018	ncRNA
227840	chr9	93467721	93468230	+	0	NA	intron (NM_001286723, intron 1 of 9)	AluSq2|SINE|Alu	-14374	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
133456	chr2	119702771	119703180	+	0	NA	intron (NR_148341, intron 12 of 16)	intron (NR_148341, intron 12 of 16)	23774	NM_030577	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
122058	chr19	48671251	48671750	+	0	NA	intron (NM_145807, intron 1 of 6)	intron (NM_145807, intron 1 of 6)	1517	NM_145807	126147		NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
73168	chr15	41481501	41482280	+	0	NA	3' UTR (NM_015138, exon 18 of 18)	3' UTR (NM_015138, exon 18 of 18)	-11984	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
31758	chr10	97868501	97868700	+	0	NA	3' UTR (NM_001010917, exon 5 of 5)	3' UTR (NM_001010917, exon 5 of 5)	7297	NR_162124	113839520		NR_162124		MIR3085	-	microRNA 3085	ncRNA
30056	chr10	73848971	73849850	+	0	NA	intron (NR_160263, intron 4 of 21)	intron (NR_160263, intron 4 of 21)	25145	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
47280	chr12	1604971	1606030	+	0	NA	Intergenic	Intergenic	-10919	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
187710	chr5	143383921	143384330	+	0	NA	intron (NR_157096, intron 1 of 7)	MSTA|LTR|ERVL-MaLR	19158	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
14462	chr1	144460551	144462050	+	0	NA	intron (NM_001385443, intron 1 of 19)	CpG	369	NM_001385428	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
119352	chr19	39981771	39982200	+	0	NA	TTS (NM_153001)	TTS (NM_153001)	10820	NM_006503	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
102695	chr17	76137221	76137600	+	0	NA	exon (NM_001454, exon 3 of 3)	exon (NM_001454, exon 3 of 3)	-3146	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
73400	chr15	42704421	42704900	+	0	NA	intron (NM_020759, intron 26 of 32)	L1M1|LINE|L1	32468	NM_138477	146059		NM_138477	ENSG00000140326	CDAN1	CDA1|CDAI|CDAN1A|DLT|PRO1295	codanin 1	protein-coding
136380	chr2	176117401	176118050	+	0	NA	intron (NM_002148, intron 1 of 1)	intron (NM_002148, intron 1 of 1)	947	NM_002148	3236		NM_002148	ENSG00000128710	HOXD10	HOX4|HOX4D|HOX4E|Hox-4.4	homeobox D10	protein-coding
2602	chr1	9912771	9912930	+	0	NA	Intergenic	Intergenic	-2581	NM_001012329	56998		NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
129032	chr2	64987471	64987630	+	0	NA	promoter-TSS (NM_001348407)	promoter-TSS (NM_001348407)	-929	NM_001193493	6509		NM_003038	ENSG00000115902	SLC1A4	ASCT1|SATT|SPATCCM	solute carrier family 1 member 4	protein-coding
97452	chr17	43669971	43670330	+	0	NA	Intergenic	Intergenic	-8228	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
191726	chr6	13696771	13697150	+	0	NA	intron (NM_005493, intron 1 of 13)	intron (NM_005493, intron 1 of 13)	14875	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
64296	chr14	23555751	23557230	+	0	NA	5' UTR (NM_024328, exon 1 of 2)	5' UTR (NM_024328, exon 1 of 2)	219	NM_024328	79178		NM_024328	ENSG00000259431	THTPA	THTP|THTPASE	thiamine triphosphatase	protein-coding
42276	chr11	68282051	68282600	+	0	NA	Intergenic	Intergenic	-10352	NM_022338	53838		NM_022338	ENSG00000171067	C11orf24	DM4E3	chromosome 11 open reading frame 24	protein-coding
160077	chr3	18745121	18745630	+	0	NA	Intergenic	Intergenic	-299783	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
114465	chr19	12729901	12730600	+	0	NA	TTS (NM_001329739)	TTS (NM_001329739)	4434	NM_001329738	79002		NM_024038	ENSG00000123144	TRIR	C19orf43|TERCIR|fSAP18	telomerase RNA component interacting RNase	protein-coding
144715	chr20	36542051	36542600	+	0	NA	intron (NM_181526, intron 1 of 2)	intron (NM_181526, intron 1 of 2)	806	NM_181526	10398		NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MMIHS4|MRLC1|MYRL2	myosin light chain 9	protein-coding
115063	chr19	14190401	14191200	+	0	NA	intron (NM_001008701, intron 1 of 23)	intron (NM_001008701, intron 1 of 23)	15369	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
55556	chr12	105957171	105957330	+	0	NA	Intergenic	Intergenic	182783	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
121023	chr19	45798271	45798430	+	0	NA	intron (NM_030785, intron 5 of 5)	AluSx|SINE|Alu	-5505	NM_004943	1762		NM_004943	ENSG00000185800	DMWD	D19S593E|DMR-N9|DMRN9|gene59	DM1 locus, WD repeat containing	protein-coding
97234	chr17	42843301	42843900	+	0	NA	promoter-TSS (NM_009590)	promoter-TSS (NM_009590)	-980	NM_009590	314		NM_001158	ENSG00000131480	AOC2	DAO2|RAO|SSAO	amine oxidase copper containing 2	protein-coding
62429	chr13	99309871	99310630	+	0	NA	intron (NR_026644, intron 4 of 8)	AluJr|SINE|Alu	-2851	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
73861	chr15	50249051	50249480	+	0	NA	intron (NM_002112, intron 9 of 11)	intron (NM_002112, intron 9 of 11)	16461	NM_002112	3067		NM_002112	ENSG00000140287	HDC	-	histidine decarboxylase	protein-coding
74611	chr15	60591001	60591700	+	0	NA	intron (NM_134260, intron 1 of 11)	CpG	1176	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
236037	chrX	55464171	55464350	+	0	NA	Intergenic	Intergenic	12133	NM_014061	28986		NM_014061	ENSG00000187601	MAGEH1	APR-1|APR1|MAGEH	MAGE family member H1	protein-coding
42083	chr11	67499921	67500580	+	0	NA	exon (NM_004910, exon 6 of 24)	exon (NM_004910, exon 6 of 24)	5113	NM_004910	9600		NM_004910	ENSG00000110697	PITPNM1	DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9	phosphatidylinositol transfer protein membrane associated 1	protein-coding
106039	chr18	8703921	8707680	+	0	NA	exon (NM_001378206, exon 1 of 16)	exon (NM_001378206, exon 1 of 16)	244	NM_001378206	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
8176	chr1	39557951	39558500	+	0	NA	intron (NR_003929, intron 1 of 8)	AluY|SINE|Alu	1473	NR_003929	728448		NR_003929	ENSG00000291129	PPIEL	PPIEP1	peptidylprolyl isomerase E like (pseudogene)	pseudo
65932	chr14	55350801	55351200	+	0	NA	exon (NM_152231, exon 2 of 2)	exon (NM_152231, exon 2 of 2)	60830	NM_014924	22863		NM_014924	ENSG00000126775	ATG14	ATG14L|BARKOR|KIAA0831	autophagy related 14	protein-coding
138435	chr2	206032041	206032300	+	0	NA	intron (NM_017759, intron 5 of 10)	L1PB1|LINE|L1	54004	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
131638	chr2	97094371	97095680	+	0	NA	promoter-TSS (NM_001320849)	promoter-TSS (NM_001320849)	-143	NM_001320849	151313		NM_199336	ENSG00000144199	FAHD2B	-	fumarylacetoacetate hydrolase domain containing 2B	protein-coding
147836	chr20	62775171	62775530	+	0	NA	non-coding (NR_046225, exon 2 of 3)	non-coding (NR_046225, exon 2 of 3)	1506	NR_046224	100652730		NR_046224	ENSG00000228705	LINC00659	-	long intergenic non-protein coding RNA 659	ncRNA
164873	chr3	71077271	71077430	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-12426	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
75792	chr15	68821801	68822430	+	0	NA	Intergenic	Intergenic	-1220	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
58576	chr12	132443651	132443950	+	0	NA	Intergenic	L1MEc|LINE|L1	-46351	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
154686	chr22	36374351	36375950	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	12817	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
151006	chr21	44426451	44427050	+	0	NA	intron (NM_001320351, intron 26 of 30)	intron (NM_001320351, intron 26 of 30)	-1187	NR_109964	101928607		NR_109964		TRPM2-AS	TRPM2-AS1	TRPM2 antisense RNA	ncRNA
100699	chr17	63832671	63833750	+	0	NA	intron (NM_001330439, intron 11 of 12)	intron (NM_001330439, intron 11 of 12)	5518	NM_001330440	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
22766	chr1	224401601	224402300	+	0	NA	intron (NM_001115113, intron 8 of 13)	intron (NM_001115113, intron 8 of 13)	-3639	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
230697	chr9	128735071	128735230	+	0	NA	intron (NM_001375958, intron 14 of 15)	intron (NM_001375958, intron 14 of 15)	10688	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
163926	chr3	52687601	52688300	+	0	NA	promoter-TSS (NR_132757)	promoter-TSS (NR_132757)	-937	NR_132757	106633805		NR_132757		SNORD136	ZL26	small nucleolar RNA, C/D box 136	snoRNA
147511	chr20	59183721	59184330	+	0	NA	intron (NM_178457, intron 1 of 5)	L1MC2|LINE|L1	20204	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
1534	chr1	3313101	3313350	+	0	NA	intron (NM_199454, intron 3 of 16)	intron (NM_199454, intron 3 of 16)	-141440	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
232941	chr9	136938671	136939030	+	0	NA	Intergenic	AluY|SINE|Alu	5888	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
25832	chr10	11214071	11214930	+	0	NA	intron (NM_001326346, intron 2 of 11)	MER91A|DNA|hAT-Tip100	49470	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
81420	chr16	8796101	8796300	+	0	NA	exon (NM_015421, exon 2 of 2)	exon (NM_015421, exon 2 of 2)	1439	NM_015421	25880		NM_015421	ENSG00000184857	TMEM186	C16orf51	transmembrane protein 186	protein-coding
51060	chr12	49826121	49826680	+	0	NA	intron (NM_001368048, intron 1 of 13)	intron (NM_001368048, intron 1 of 13)	2013	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
142442	chr20	3932521	3934000	+	0	NA	3' UTR (NM_001134338, exon 7 of 7)	3' UTR (NM_001134338, exon 7 of 7)	-15697	NR_031722	100302282		NR_031722	ENSG00000283320	MIR103B2	MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as	microRNA 103b-2	ncRNA
170773	chr3	188568801	188569000	+	0	NA	promoter-TSS (NR_046623)	promoter-TSS (NR_046623)	-234	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
36893	chr11	10752671	10752830	+	0	NA	exon (NM_014633, exon 2 of 25)	exon (NM_014633, exon 2 of 25)	1504	NM_014633	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
128244	chr2	54529801	54530230	+	0	NA	TTS (NR_002229)	TTS (NR_002229)	793	NR_002229	56969		NM_020217		RPL23AP32	RPL23A_9_220	ribosomal protein L23a pseudogene 32	pseudo
207091	chr7	39984321	39984580	+	0	NA	intron (NM_003718, intron 1 of 13)	intron (NM_003718, intron 1 of 13)	34090	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
36922	chr11	10805271	10805650	+	0	NA	intron (NM_001172705, intron 4 of 21)	AluSx1|SINE|Alu	2536	NM_001172705	1982		NM_001418	ENSG00000110321	EIF4G2	AAG1|DAP5|NAT1|P97	eukaryotic translation initiation factor 4 gamma 2	protein-coding
1706	chr1	5370221	5370480	+	0	NA	Intergenic	Intergenic	492391	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
117590	chr19	21698221	21698480	+	0	NA	Intergenic	Intergenic	48682	NR_144514	400682		NR_144514		LOC400682	-	zinc finger protein 100-like	pseudo
157510	chr22	45334601	45335330	+	0	NA	intron (NR_146323, intron 9 of 11)	intron (NR_146323, intron 9 of 11)	16522	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
106333	chr18	12988321	12988580	+	0	NA	TTS (NM_001013437)	TTS (NM_001013437)	-2912	NM_032142	55125		NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
121329	chr19	46778501	46779380	+	0	NA	intron (NM_005628, intron 4 of 7)	intron (NM_005628, intron 4 of 7)	5874	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
9405	chr1	47448221	47448480	+	0	NA	Intergenic	Intergenic	10306	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
229751	chr9	125175571	125175730	+	0	NA	intron (NM_001123369, intron 1 of 5)	AluY|SINE|Alu	14153	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
219704	chr8	80918251	80919050	+	0	NA	Intergenic	Intergenic	-43869	NM_001033723	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
33639	chr10	119667671	119667830	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	16370	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
115369	chr19	15233001	15233930	+	0	NA	promoter-TSS (NM_001142886)	promoter-TSS (NM_001142886)	-418	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
99467	chr17	50155571	50155750	+	0	NA	Intergenic	Intergenic	-4983	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
51095	chr12	50024721	50026180	+	0	NA	promoter-TSS (NM_001319999)	promoter-TSS (NM_001319999)	44	NM_001319999	29127		NM_013277	ENSG00000161800	RACGAP1	CDAN3B|CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
153474	chr22	25450251	25450550	+	0	NA	intron (NR_033734, intron 1 of 4)	intron (NR_033734, intron 1 of 4)	2313	NR_033733	1416		NR_033733	ENSG00000291087	CRYBB2P1	CRYB2B	crystallin beta B2 pseudogene 1	pseudo
92762	chr17	15444851	15444950	+	0	NA	intron (NR_037924, intron 4 of 5)	intron (NR_037924, intron 4 of 5)	22721	NM_001204477	284040		NM_173622	ENSG00000239704	CDRT4	-	CMT1A duplicated region transcript 4	protein-coding
148216	chr20	63578121	63579250	+	0	NA	Intergenic	Intergenic	-4446	NM_001037335	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
103270	chr17	77733871	77734430	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-5591	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
228047	chr9	96019871	96020330	+	0	NA	non-coding (NR_024129, exon 2 of 2)	non-coding (NR_024129, exon 2 of 2)	1711	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
149699	chr21	33975251	33977130	+	0	NA	promoter-TSS (NR_134561)	promoter-TSS (NR_134561)	-192	NR_134561	101928126		NR_134561		LOC101928126	-	uncharacterized LOC101928126	ncRNA
75981	chr15	70529871	70530880	+	0	NA	Intergenic	(ACACAC)n|Simple_repeat|Simple_repeat	-24447	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
219953	chr8	89557701	89557930	+	0	NA	Intergenic	L1PA2|LINE|L1	199896	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
71989	chr15	25812251	25812830	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	36285	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
161144	chr3	38932751	38932850	+	0	NA	intron (NM_014139, intron 3 of 25)	L1PA3|LINE|L1	17761	NM_014139	11280		NM_014139	ENSG00000168356	SCN11A	FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2	sodium voltage-gated channel alpha subunit 11	protein-coding
236210	chrX	65689351	65689650	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	21846	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
17689	chr1	158087451	158087550	+	0	NA	intron (NM_018240, intron 5 of 14)	intron (NM_018240, intron 5 of 14)	53140	NR_033946	646268		NR_033946	ENSG00000231666	LINC01704	-	long intergenic non-protein coding RNA 1704	ncRNA
95836	chr17	38810051	38810350	+	0	NA	intron (NM_017748, intron 5 of 9)	intron (NM_017748, intron 5 of 9)	-10295	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
208738	chr7	73438951	73439050	+	0	NA	Intergenic	Intergenic	5222	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
176998	chr4	105306171	105306930	+	0	NA	intron (NR_126420, intron 2 of 5)	intron (NR_126420, intron 2 of 5)	46331	NR_126420	104384744		NR_126420		TET2-AS1	-	TET2 antisense RNA 1	ncRNA
199112	chr6	111684571	111684730	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	74481	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
132191	chr2	101900321	101900650	+	0	NA	Intergenic	Intergenic	-82980	NR_103791	100506328		NR_103791		LINC01127	-	long intergenic non-protein coding RNA 1127	ncRNA
80711	chr16	3081721	3081980	+	0	NA	Intergenic	Intergenic	16066	NM_001012636	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
71238	chr14	105182671	105183250	+	0	NA	Intergenic	Intergenic	-1637	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
141286	chr2	240197101	240197500	+	0	NA	Intergenic	Intergenic	-56642	NM_148961	150677		NM_148961	ENSG00000178602	OTOS	OTOSP	otospiralin	protein-coding
38949	chr11	47518201	47519030	+	0	NA	intron (NM_001376409, intron 1 of 15)	intron (NM_001376409, intron 1 of 15)	5216	NM_001172639	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
219603	chr8	80032901	80033400	+	0	NA	Intergenic	LTR2752|LTR|ERV1	-2891	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
156483	chr22	41274951	41275250	+	0	NA	intron (NM_001278651, intron 3 of 16)	intron (NM_001278651, intron 3 of 16)	11087	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
27305	chr10	30454221	30454680	+	0	NA	intron (NM_001320961, intron 5 of 7)	AluJo|SINE|Alu	19804	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
167175	chr3	128094621	128095800	+	0	NA	intron (NM_003707, intron 8 of 10)	intron (NM_003707, intron 8 of 10)	19400	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
9095	chr1	45050801	45051650	+	0	NA	exon (NM_020883, exon 5 of 14)	exon (NM_020883, exon 5 of 14)	38971	NR_158185	7389		NM_000374	ENSG00000126088	UROD	PCT|UPD	uroporphyrinogen decarboxylase	protein-coding
147497	chr20	59165501	59166930	+	0	NA	intron (NM_178457, intron 1 of 5)	MER113|DNA|hAT-Charlie	2394	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
56664	chr12	119937921	119938380	+	0	NA	Intergenic	Intergenic	-51086	NM_001367886	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
157767	chr22	46734821	46735480	+	0	NA	intron (NM_022766, intron 1 of 12)	intron (NM_022766, intron 1 of 12)	3102	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
4200	chr1	19446871	19447030	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	37345	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
94223	chr17	28648821	28649180	+	0	NA	non-coding (NR_045585, exon 3 of 3)	non-coding (NR_045585, exon 3 of 3)	-3841	NM_001363827	9703		NM_014680	ENSG00000007202	BLTP2	BCOX|BCOX1|CT101|FMP27|Hob|KIAA0100	bridge-like lipid transfer protein family member 2	protein-coding
170674	chr3	187737291	187738200	+	0	NA	intron (NM_001706, intron 1 of 9)	CpG	-1244	NM_001130845	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
154263	chr22	31625451	31625750	+	0	NA	intron (NM_001326413, intron 2 of 7)	intron (NM_001326413, intron 2 of 7)	-4069	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
185435	chr5	131209371	131210280	+	0	NA	Intergenic	L1ME1|LINE|L1	38881	NM_001293735	90624		NM_181705	ENSG00000186687	LYRM7	C5orf31|MC3DN8|MZM1L	LYR motif containing 7	protein-coding
77904	chr15	89197101	89197500	+	0	NA	3' UTR (NM_007011, exon 15 of 15)	3' UTR (NM_007011, exon 15 of 15)	24279	NM_000326	6017		NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
62501	chr13	99431671	99433380	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	66781	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
23125	chr1	226695551	226695930	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-20672	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
53876	chr12	70257301	70257700	+	0	NA	intron (NR_037615, intron 1 of 16)	AluYk3|SINE|Alu	13786	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
184033	chr5	91367751	91368750	+	0	NA	TTS (NM_020801)	TTS (NM_020801)	11847	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
11604	chr1	91686971	91687330	+	0	NA	intron (NR_036634, intron 17 of 17)	intron (NR_036634, intron 17 of 17)	186042	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
216315	chr8	12716401	12716800	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-2527	NR_049875	100847066		NR_049875	ENSG00000266318	MIR5692A1	-	microRNA 5692a-1	ncRNA
46263	chr11	124757201	124757700	+	0	NA	intron (NM_138961, intron 2 of 6)	intron (NM_138961, intron 2 of 6)	-1684	NR_120577	101929340		NR_120577	ENSG00000250073	ESAM-AS1	-	ESAM antisense RNA 1	ncRNA
209189	chr7	75412001	75412430	+	0	NA	intron (NR_104013, intron 3 of 7)	L2c|LINE|L2	1893	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
118484	chr19	35909201	35909980	+	0	NA	Intergenic	Intergenic	-1295	NM_003332	7305		NM_003332	ENSG00000011600	TYROBP	DAP12|KARAP|PLOSL|PLOSL1	transmembrane immune signaling adaptor TYROBP	protein-coding
2639	chr1	10325651	10325750	+	0	NA	intron (NM_001365952, intron 26 of 48)	intron (NM_001365952, intron 26 of 48)	26734	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
47466	chr12	3879021	3879680	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-5902	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
139187	chr2	219223671	219223830	+	0	NA	exon (NM_001077198, exon 10 of 16)	exon (NM_001077198, exon 10 of 16)	-4792	NM_001349828	10058		NM_005689	ENSG00000115657	ABCB6	ABC|LAN|MTABC3|PRP|umat	ATP binding cassette subfamily B member 6 (LAN blood group)	protein-coding
64485	chr14	24307721	24308630	+	0	NA	3' UTR (NM_001286367, exon 10 of 10)	3' UTR (NM_001286367, exon 10 of 10)	-1965	NM_019839	56413		NM_019839	ENSG00000213906	LTB4R2	BLT2|BLTR2|JULF2|KPG_004|LTB4-R 2|LTB4-R2|NOP9	leukotriene B4 receptor 2	protein-coding
170120	chr3	183224471	183224930	+	0	NA	intron (NM_015078, intron 18 of 29)	intron (NM_015078, intron 18 of 29)	-28553	NM_032047	84002		NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding
89572	chr16	89261851	89262950	+	0	NA	Intergenic	LTR1D|LTR|ERV1	-33728	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
152567	chr22	21055821	21056600	+	0	NA	intron (NM_001291006, intron 7 of 9)	intron (NM_001291006, intron 7 of 9)	10264	NR_027006	400891		NM_001013675	ENSG00000187905	LRRC74B	-	leucine rich repeat containing 74B	protein-coding
101290	chr17	66406321	66407260	+	0	NA	intron (NR_110822, intron 3 of 3)	intron (NR_110822, intron 3 of 3)	10064	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
141764	chr2	242008051	242008500	+	0	NA	intron (NR_110220, intron 3 of 3)	CpG	7066	NR_149023	285097		NM_178530	ENSG00000280119	LOC285097	-	uncharacterized FLJ38379	ncRNA
109566	chr19	890751	890950	+	0	NA	intron (NM_005481, intron 2 of 15)	intron (NM_005481, intron 2 of 15)	2337	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
226182	chr9	64773521	64774150	+	0	NA	Intergenic	CpG	-28469	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
3070	chr1	12180471	12180630	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	-11163	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
151494	chr21	46323001	46325900	+	0	NA	promoter-TSS (NM_001315529)	promoter-TSS (NM_001315529)	-217	NM_001315529	5116		NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
111414	chr19	3775351	3775650	+	0	NA	Intergenic	MIRb|SINE|MIR	-3272	NM_032753	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
159308	chr3	13002251	13003150	+	0	NA	intron (NM_001134382, intron 1 of 13)	L1MB7|LINE|L1	-15599	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
12406	chr1	101313471	101313630	+	0	NA	Intergenic	Intergenic	-10287	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
112461	chr19	6386151	6386650	+	0	NA	intron (NM_002096, intron 5 of 12)	AluSq|SINE|Alu	3303	NR_106945	102465533		NR_106945	ENSG00000274390	MIR6885	hsa-mir-6885	microRNA 6885	ncRNA
142711	chr20	8428971	8429200	+	0	NA	intron (NM_015192, intron 3 of 31)	intron (NM_015192, intron 3 of 31)	180381	NR_046809	100874337		NR_046809	ENSG00000225479	PLCB1-IT1	-	PLCB1 intronic transcript 1	ncRNA
66143	chr14	60251501	60252100	+	0	NA	intron (NM_177951, intron 2 of 3)	intron (NM_177951, intron 2 of 3)	2579	NM_021003	5494		NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
180468	chr5	10775671	10775830	+	0	NA	Intergenic	Intergenic	-14516	NM_001291963	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
178825	chr4	153545351	153545450	+	0	NA	intron (NM_015196, intron 3 of 34)	AluY|SINE|Alu	79040	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
113158	chr19	8353701	8354630	+	0	NA	Intergenic	Intergenic	-9990	NR_104213	51129		NM_016109	ENSG00000167772	ANGPTL4	ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158	angiopoietin like 4	protein-coding
6974	chr1	31787821	31788800	+	0	NA	Intergenic	Intergenic	-23970	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
28027	chr10	43211621	43211880	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	17989	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
104691	chr17	81523171	81523800	+	0	NA	Intergenic	Intergenic	-4892	NM_001077182	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
206164	chr7	28033721	28034380	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-146407	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
141663	chr2	241771671	241772730	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-4622	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
165354	chr3	88508471	88508630	+	0	NA	Intergenic	L1PA2|LINE|L1	170094	NM_001368168	111064647		NM_001368165	ENSG00000283434	CSNKA2IP	-	casein kinase 2 subunit alpha' interacting protein	protein-coding
152710	chr22	21642901	21644480	+	0	NA	intron (NM_022044, intron 2 of 2)	intron (NM_022044, intron 2 of 2)	1388	NM_022044	23753		NM_022044	ENSG00000128228	SDF2L1	-	stromal cell derived factor 2 like 1	protein-coding
112790	chr19	7480751	7481330	+	0	NA	intron (NM_080662, intron 3 of 4)	intron (NM_080662, intron 3 of 4)	7995	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
140566	chr2	233322901	233323100	+	0	NA	exon (NM_000541, exon 6 of 16)	exon (NM_000541, exon 6 of 16)	15184	NM_000541	6295		NM_000541	ENSG00000130561	SAG	RP47|RP96|S-AG	S-antigen visual arrestin	protein-coding
16000	chr1	151995371	151995530	+	0	NA	Intergenic	Intergenic	-1591	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
208390	chr7	66684451	66685250	+	0	NA	intron (NM_001367745, intron 1 of 7)	AluY|SINE|Alu	2684	NM_001367732	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
45698	chr11	119071821	119072280	+	0	NA	intron (NR_165447, intron 5 of 15).2	AluSz|SINE|Alu	4037	NM_001378221	55823		NM_021729	ENSG00000160695	VPS11	END1|HLD12|HLD12; DYT32|PEP5|RNF108|hVPS11	VPS11 core subunit of CORVET and HOPS complexes	protein-coding
200018	chr6	129598321	129598850	+	0	NA	intron (NM_033515, intron 12 of 14)	intron (NM_033515, intron 12 of 14)	111592	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
42756	chr11	72726401	72726600	+	0	NA	intron (NM_001040118, intron 3 of 34)	L2c|LINE|L2	-4142	NM_001135190	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
91908	chr17	7306321	7308200	+	0	NA	promoter-TSS (NM_001370421)	promoter-TSS (NM_001370421)	258	NM_001370420	1984		NM_001970	ENSG00000132507	EIF5A	EIF-5A|EIF5A1|FABAS|eIF-4D|eIF5AI	eukaryotic translation initiation factor 5A	protein-coding
176612	chr4	99087101	99087300	+	0	NA	intron (NM_000671, intron 1 of 8)	AluSq2|SINE|Alu	1588	NM_000671	128		NM_000671	ENSG00000197894	ADH5	ADH-3|ADHX|AMEDS|BMFS7|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding
116285	chr19	17745901	17746100	+	0	NA	Intergenic	AluY|SINE|Alu	-1744	NM_001384396	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
100970	chr17	64517051	64517350	+	0	NA	intron (NR_133644, intron 5 of 19)	AluSx|SINE|Alu	10223	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
24702	chr1	247328401	247329200	+	0	NA	exon (NM_001329733, exon 5 of 10)	exon (NM_001329733, exon 5 of 10)	3067	NM_032752	84838		NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
5064	chr1	24651971	24652330	+	0	NA	intron (NR_159382, intron 6 of 17)	AluJb|SINE|Alu	8571	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
18114	chr1	160708561	160709480	+	0	NA	intron (NM_001256030, intron 1 of 2)	intron (NM_001256030, intron 1 of 2)	2802	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
178547	chr4	151101801	151102200	+	0	NA	promoter-TSS (NR_145963)	promoter-TSS (NR_145963)	-57	NR_145963	114655		NR_145963	ENSG00000201264	SNORD73B	RNU73B|U73B	small nucleolar RNA, C/D box U73B	snoRNA
31278	chr10	92294801	92295980	+	0	NA	intron (NM_017824, intron 1 of 5)	AluY|SINE|Alu	4223	NM_017824	54708		NM_017824	ENSG00000198060	MARCHF5	MARCH-V|MARCH5|MITOL|RNF153	membrane associated ring-CH-type finger 5	protein-coding
182510	chr5	65037371	65038070	+	0	NA	Intergenic	Intergenic	268790	NM_001364478	10283		NM_005869	ENSG00000153015	CWC27	NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10	CWC27 spliceosome associated cyclophilin	protein-coding
84528	chr16	30522371	30522530	+	0	NA	3' UTR (NM_001114380, exon 29 of 29)	3' UTR (NM_001114380, exon 29 of 29)	4116	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
180496	chr5	14218801	14219200	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	75658	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
137893	chr2	200855221	200856180	+	0	NA	intron (NR_027856, intron 7 of 10)	intron (NR_027856, intron 7 of 10)	8861	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
69513	chr14	96038401	96040050	+	0	NA	promoter-TSS (NM_001282463)	promoter-TSS (NM_001282463)	-99	NM_001282464	56967		NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
78292	chr15	90887351	90887530	+	0	NA	intron (NM_001143783, intron 3 of 16)	intron (NM_001143783, intron 3 of 16)	2394	NM_001143784	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
30783	chr10	84354201	84354600	+	0	NA	intron (NM_001284241, intron 1 of 2)	L2c|LINE|L2	25811	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
225154	chr9	33786671	33786830	+	0	NA	intron (NM_001197098, intron 1 of 4)	intron (NM_001197098, intron 1 of 4)	-8811	NM_002771	5646		NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	serine protease 3	protein-coding
215101	chr7	155208471	155209850	+	0	NA	Intergenic	Intergenic	-88612	NM_001346592	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
12355	chr1	101234451	101234550	+	0	NA	TTS (NR_104626)	TTS (NR_104626)	2028	NR_104626	101928370		NR_104626		S1PR1-DT	LISPR1	S1PR1 divergent transcript	ncRNA
13835	chr1	117633471	117633630	+	0	NA	Intergenic	MIRc|SINE|MIR	27502	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
234945	chrX	38803021	38803280	+	0	NA	5' UTR (NM_021242, exon 2 of 3)	5' UTR (NM_021242, exon 2 of 3)	733	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
236804	chrX	79157321	79157800	+	0	NA	intron (NM_032553, intron 2 of 2)	intron (NM_032553, intron 2 of 2)	12872	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
140598	chr2	233389121	233389580	+	0	NA	intron (NM_003648, intron 1 of 28)	intron (NM_003648, intron 1 of 28)	1196	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
70940	chr14	104639921	104640400	+	0	NA	Intergenic	CpG	25398	NR_135293	101929634		NR_135293	ENSG00000260792	LINC02280	-	long intergenic non-protein coding RNA 2280	ncRNA
182767	chr5	68302951	68304380	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	11088	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
73679	chr15	44783051	44783430	+	0	NA	Intergenic	MIRb|SINE|MIR	46712	NM_001301145	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
94706	chr17	30697451	30698550	+	0	NA	Intergenic	Intergenic	-11608	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
26773	chr10	22913351	22914130	+	0	NA	Intergenic	Intergenic	-14284	NM_001282747	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
134195	chr2	134407251	134407750	+	0	NA	intron (NM_001371457, intron 12 of 16)	intron (NM_001371457, intron 12 of 16)	153428	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
149970	chr21	36585071	36585230	+	0	NA	Intergenic	Intergenic	-8581	NM_001146077	23562		NM_012130	ENSG00000159261	CLDN14	DFNB29	claudin 14	protein-coding
195050	chr6	35493221	35493780	+	0	NA	intron (NM_003214, intron 1 of 12)	intron (NM_003214, intron 1 of 12)	3579	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
184339	chr5	96954571	96955130	+	0	NA	intron (NM_005575, intron 1 of 17)	AluY|SINE|Alu	-3583	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
37885	chr11	34001001	34001200	+	0	NA	Intergenic	AluSx|SINE|Alu	-50631	NM_005898	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
206505	chr7	33639901	33640100	+	0	NA	Intergenic	MIRc|SINE|MIR	-85981	NR_165282	55025		NM_017937	ENSG00000173862	FLJ20712	-	uncharacterized FLJ20712	ncRNA
2917	chr1	11708501	11708900	+	0	NA	intron (NM_198545, intron 2 of 6)	MIRb|SINE|MIR	16990	NM_198545	374946		NM_198545	ENSG00000162490	DRAXIN	AGPA3119|C1orf187|UNQ3119|neucrin	dorsal inhibitory axon guidance protein	protein-coding
30128	chr10	74037051	74037150	+	0	NA	intron (NM_014000, intron 1 of 21)	AluY|SINE|Alu	38984	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
9769	chr1	53411601	53412080	+	0	NA	Intergenic	Intergenic	28180	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
160226	chr3	23949921	23950830	+	0	NA	intron (NM_001145425, intron 1 of 7)	MIRb|SINE|MIR	-3813	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
24348	chr1	239976401	239976600	+	0	NA	Intergenic	Intergenic	-31024	NR_036695	645884		NR_036695		RPS7P5	RPS7_2_183	ribosomal protein S7 pseudogene 5	pseudo
28199	chr10	44958121	44958550	+	0	NA	intron (NR_033842, intron 1 of 7)	intron (NR_033842, intron 1 of 7)	1354	NR_033842	220980		NR_033842	ENSG00000224812	TMEM72-AS1	-	TMEM72 antisense RNA 1	ncRNA
78561	chr15	93011271	93011630	+	0	NA	intron (NM_001271, intron 35 of 38)	intron (NM_001271, intron 35 of 38)	61706	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
211430	chr7	105062101	105062300	+	0	NA	exon (NM_018682, exon 3 of 26)	exon (NM_018682, exon 3 of 26)	47995	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
166382	chr3	113472051	113472350	+	0	NA	intron (NM_144718, intron 7 of 17)	L1PA3|LINE|L1	-30686	NM_018338	55779		NM_018338	ENSG00000206530	CFAP44	SPGF20|WDR52	cilia and flagella associated protein 44	protein-coding
180837	chr5	32545101	32545300	+	0	NA	Intergenic	Intergenic	-40357	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
51473	chr12	52065271	52065430	+	0	NA	Intergenic	L2c|LINE|L2	-4624	NM_021934	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
159971	chr3	17744121	17744630	+	0	NA	intron (NR_135536, intron 1 of 1)	AluSc8|SINE|Alu	1431	NR_135536	105376975		NR_135536	ENSG00000286352	LOC105376975	-	uncharacterized LOC105376975	ncRNA
51325	chr12	51329701	51330330	+	0	NA	intron (NM_001971, intron 6 of 7)	intron (NM_001971, intron 6 of 7)	-5347	NM_001290007	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
30821	chr10	86363251	86363580	+	0	NA	intron (NM_017551, intron 2 of 15)	CpG	3380	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
223403	chr8	143926051	143926780	+	0	NA	intron (NM_201383, intron 30 of 31)	intron (NM_201383, intron 30 of 31)	13182	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
109598	chr19	928021	928930	+	0	NA	intron (NM_005224, intron 1 of 8)	intron (NM_005224, intron 1 of 8)	2440	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
74040	chr15	52378371	52378930	+	0	NA	intron (NM_001382348, intron 19 of 42)	intron (NM_001382348, intron 19 of 42)	-82846	NM_018728	55930		NM_018728	ENSG00000128833	MYO5C	-	myosin VC	protein-coding
193318	chr6	30127601	30128100	+	0	NA	Intergenic	Intergenic	-8290	NM_001286633	135644		NM_138700	ENSG00000204614	TRIM40	RNF35	tripartite motif containing 40	protein-coding
85500	chr16	50754551	50755050	+	0	NA	intron (NM_015247, intron 7 of 19)	L1PB1|LINE|L1	12385	NM_001378748	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
38642	chr11	46365171	46365780	+	0	NA	intron (NM_001105540, intron 1 of 31)	intron (NM_001105540, intron 1 of 31)	3869	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
195707	chr6	38714751	38714850	+	0	NA	promoter-TSS (NM_001206927)	promoter-TSS (NM_001206927)	-511	NM_001371	1769		NM_001371	ENSG00000124721	DNAH8	ATPase|SPGF46|hdhc9	dynein axonemal heavy chain 8	protein-coding
114076	chr19	11100151	11100400	+	0	NA	exon (NM_001195798, exon 2 of 18)	exon (NM_001195798, exon 2 of 18)	-10616	NR_163945	115271120		NR_163945		LDLR-AS1	-	LDLR antisense RNA 1	ncRNA
10403	chr1	65148701	65149400	+	0	NA	promoter-TSS (NM_001330616)	promoter-TSS (NM_001330616)	56	NM_001330616	205		NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding
155249	chr22	37952851	37954650	+	0	NA	promoter-TSS (NR_125371)	promoter-TSS (NR_125371)	51	NM_021974	5435		NM_021974	ENSG00000100142	POLR2F	HRBP14.4|POLRF|RPABC14.4|RPABC2|RPB14.4|RPB6|RPC15	RNA polymerase II, I and III subunit F	protein-coding
85127	chr16	34587921	34588980	+	0	NA	Intergenic	Intergenic	-206970	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
188254	chr5	151072271	151072430	+	0	NA	intron (NM_001252390, intron 1 of 17)	intron (NM_001252390, intron 1 of 17)	-7219	NM_001258456	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
64218	chr14	23064051	23064350	+	0	NA	exon (NM_001164816, exon 5 of 12)	exon (NM_001164816, exon 5 of 12)	6540	NR_169511	105370705		NR_169511	ENSG00000288795	LOC105370705	-	collagen alpha-2(I) chain-like	ncRNA
118432	chr19	35828621	35829000	+	0	NA	intron (NM_004646, intron 28 of 28)	MER58B|DNA|hAT-Charlie	-15965	NM_001378292	58510		NM_021232	ENSG00000250799	PRODH2	HSPOX1|HYPDH	proline dehydrogenase 2	protein-coding
117624	chr19	23283551	23284550	+	0	NA	Intergenic	AluJb|SINE|Alu	-9799	NR_103741	100132815		NR_103741		IPO5P1	-	importin 5 pseudogene 1	pseudo
16599	chr1	155055921	155056180	+	0	NA	intron (NM_207195, intron 8 of 21)	intron (NM_207195, intron 8 of 21)	4734	NM_001261464	8751		NM_003815	ENSG00000143537	ADAM15	MDC15	ADAM metallopeptidase domain 15	protein-coding
69774	chr14	99174901	99175150	+	0	NA	exon (NM_138576, exon 4 of 4)	exon (NM_138576, exon 4 of 4)	97172	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
138129	chr2	202298271	202298430	+	0	NA	intron (NM_015934, intron 12 of 14)	intron (NM_015934, intron 12 of 14)	5299	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
165898	chr3	106302571	106302930	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-433349	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
98587	chr17	47732601	47734200	+	0	NA	5' UTR (NM_013351, exon 1 of 6)	5' UTR (NM_013351, exon 1 of 6)	164	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
71682	chr15	20050051	20050350	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-232544	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
146629	chr20	50188451	50189180	+	0	NA	intron (NR_125739, intron 4 of 6)	L2b|LINE|L2	-1768	NM_001285878	1051		NM_005194	ENSG00000172216	CEBPB	C/EBP-beta|IL6DBP|NF-IL6|TCF5	CCAAT enhancer binding protein beta	protein-coding
208127	chr7	60125751	60125850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2675623	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
69615	chr14	97604171	97605130	+	0	NA	Intergenic	Intergenic	82008	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
178238	chr4	143335801	143336100	+	0	NA	promoter-TSS (NM_207123)	promoter-TSS (NM_207123)	-926	NM_207123	2549		NM_002039	ENSG00000109458	GAB1	DFNB26	GRB2 associated binding protein 1	protein-coding
50927	chr12	49341051	49341700	+	0	NA	Intergenic	Intergenic	-4187	NM_001008223	338761		NM_001008223	ENSG00000186897	C1QL4	C1QTNF11|CTRP11	complement C1q like 4	protein-coding
226134	chr9	63384301	63384500	+	0	NA	Intergenic	AluJr|SINE|Alu	49862	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
89223	chr16	88627101	88627900	+	0	NA	intron (NM_144604, intron 13 of 17)	intron (NM_144604, intron 13 of 17)	-11072	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
179928	chr5	759021	759800	+	0	NA	intron (NM_001351303, intron 4 of 13)	intron (NM_001351303, intron 4 of 13)	25319	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
17982	chr1	160494751	160494850	+	0	NA	intron (NM_001184716, intron 1 of 6)	MLT1C|LTR|ERVL-MaLR	28455	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
63494	chr13	114203651	114204100	+	0	NA	Intergenic	Intergenic	-30970	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
127921	chr2	46357051	46357350	+	0	NA	intron (NM_001430, intron 4 of 15)	MLT1H1|LTR|ERVL-MaLR	36967	NR_146999	105374582		NR_146999	ENSG00000228100	LINC01820	-	long intergenic non-protein coding RNA 1820	ncRNA
48931	chr12	12712971	12713130	+	0	NA	Intergenic	L2a|LINE|L2	-4318	NM_004064	1027		NM_004064	ENSG00000111276	CDKN1B	CDKN4|KIP1|MEN1B|MEN4|P27KIP1	cyclin dependent kinase inhibitor 1B	protein-coding
200273	chr6	132675751	132676050	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	-16718	NM_138327	134864		NM_138327	ENSG00000146399	TAAR1	TA1|TAR1|TRAR1	trace amine associated receptor 1	protein-coding
117723	chr19	29525221	29525950	+	0	NA	promoter-TSS (NM_001384640)	promoter-TSS (NM_001384640)	167	NM_001384642	342865		NM_001146339	ENSG00000187135	VSTM2B	-	V-set and transmembrane domain containing 2B	protein-coding
674	chr1	1379171	1379330	+	0	NA	Intergenic	AluSz|SINE|Alu	-4043	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
39068	chr11	47978101	47979100	+	0	NA	Intergenic	AluSz|SINE|Alu	-1959	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
36629	chr11	7520921	7521280	+	0	NA	intron (NM_001351855, intron 1 of 24)	intron (NM_001351855, intron 1 of 24)	7101	NM_001351856	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
194971	chr6	35331821	35332680	+	0	NA	Intergenic	L1P2|LINE|L1	-10308	NM_001171818	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
120622	chr19	45047451	45047880	+	0	NA	intron (NM_001278439, intron 2 of 19)	L1MB2|LINE|L1	8620	NR_103529	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
107258	chr18	41977301	41977500	+	0	NA	intron (NM_002647, intron 4 of 24)	intron (NM_002647, intron 4 of 24)	22166	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
196030	chr6	42033601	42034580	+	0	NA	intron (NM_001287434, intron 1 of 4)	AluJr|SINE|Alu	14804	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
33932	chr10	124610221	124611050	+	0	NA	intron (NM_022126, intron 6 of 6)	CpG	-93393	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
162795	chr3	49101751	49102050	+	0	NA	intron (NM_001272073, intron 7 of 23)	intron (NM_001272073, intron 7 of 23)	-1986	NR_106950	102465536		NR_106950	ENSG00000284488	MIR6890	hsa-mir-6890	microRNA 6890	ncRNA
60650	chr13	42494221	42494680	+	0	NA	Intergenic	Intergenic	-68286	NM_033012	8600		NM_003701	ENSG00000120659	TNFSF11	CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf	TNF superfamily member 11	protein-coding
26514	chr10	21055221	21055680	+	0	NA	intron (NM_001377324, intron 2 of 6)	intron (NM_001377324, intron 2 of 6)	117529	NM_001377323	10529		NM_006393	ENSG00000078114	NEBL	C10orf113|LASP2|LNEBL|bA165O3.1	nebulette	protein-coding
163544	chr3	51679321	51679780	+	0	NA	intron (NM_001243727, intron 2 of 3)	MIR|SINE|MIR	7923	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
181702	chr5	50637571	50638050	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-28121	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
137771	chr2	199456951	199457280	+	0	NA	intron (NM_015265, intron 2 of 11)	CpG-16887	824	NM_001172509	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
176186	chr4	83451421	83451780	+	0	NA	TTS (NR_123737)	TTS (NR_123737)	4223	NM_001297759	113510		NM_133636	ENSG00000163312	HELQ	HEL308	helicase, POLQ like	protein-coding
129536	chr2	69743701	69744100	+	0	NA	intron (NM_001320702, intron 1 of 12)	intron (NM_001320702, intron 1 of 12)	1766	NM_001320700	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
43641	chr11	85595251	85595600	+	0	NA	intron (NM_001351274, intron 3 of 26)	intron (NM_001351274, intron 3 of 26)	31919	NM_001142699	1740		NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
17791	chr1	159785421	159785880	+	0	NA	Intergenic	Intergenic	4688	NM_001319659	54935		NM_017823	ENSG00000158716	DUSP23	DUSP25|LDP-3|LDP3|MOSP|VHZ	dual specificity phosphatase 23	protein-coding
54027	chr12	75508351	75508650	+	0	NA	intron (NM_007043, intron 1 of 9)	intron (NM_007043, intron 1 of 9)	3109	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
129811	chr2	71538851	71539280	+	0	NA	intron (NM_003494, intron 15 of 54)	intron (NM_003494, intron 15 of 54)	72366	NM_001130987	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
101392	chr17	67362851	67362950	+	0	NA	intron (NM_001316341, intron 1 of 12)	MIR|SINE|MIR	3677	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
177818	chr4	123564801	123565180	+	0	NA	Intergenic	Intergenic	-85001	NR_027105	285419		NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA
84467	chr16	30458421	30459850	+	0	NA	Intergenic	Intergenic	-13261	NM_012248	22928		NM_012248	ENSG00000179918	SEPHS2	SPS2	selenophosphate synthetase 2	protein-coding
91824	chr17	7175271	7175430	+	0	NA	intron (NM_001671, intron 5 of 8)	(CA)n|Simple_repeat|Simple_repeat	4020	NM_001671	432		NM_001671	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
8905	chr1	43967501	43967700	+	0	NA	exon (NM_014652, exon 20 of 20)	exon (NM_014652, exon 20 of 20)	-2410	NM_001039589	1802		NM_001384	ENSG00000132768	DPH2	DEDSSH2|DPH2L2	diphthamide biosynthesis 2	protein-coding
238144	chrX	136750421	136750950	+	0	NA	intron (NM_004840, intron 2 of 21)	intron (NM_004840, intron 2 of 21)	17130	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
182048	chr5	55918301	55918500	+	0	NA	intron (NM_001242637, intron 15 of 15)	MamGypLTR2b|LTR|Gypsy	65078	NM_001242639	133396		NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R|zcytoR17	interleukin 31 receptor A	protein-coding
219447	chr8	72994871	72995100	+	0	NA	Intergenic	Intergenic	-13879	NM_003218	7013		NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding
225015	chr9	33133321	33133800	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	24868	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
186455	chr5	137734951	137736530	+	0	NA	5' UTR (NM_017415, exon 1 of 15)	5' UTR (NM_017415, exon 1 of 15)	349	NM_017415	26249		NM_017415	ENSG00000146021	KLHL3	PHA2D	kelch like family member 3	protein-coding
101143	chr17	65047171	65047430	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluJr4|SINE|Alu	8474	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
194308	chr6	32816621	32817200	+	0	NA	promoter-TSS (NM_002120)	promoter-TSS (NM_002120)	92	NM_002120	3112		NM_002120	ENSG00000241106	HLA-DOB	DOB|HLA_DOB	major histocompatibility complex, class II, DO beta	protein-coding
224413	chr9	14994071	14994500	+	0	NA	intron (NR_003920, intron 1 of 4)	intron (NR_003920, intron 1 of 4)	958	NR_003920	389705		NR_003920		LOC389705	-	histone PARylation factor 1 pseudogene	pseudo
170397	chr3	185208021	185208280	+	0	NA	intron (NM_001966, intron 5 of 6)	MLT1F2|LTR|ERVL-MaLR	45122	NR_106712	100847054		NR_106712	ENSG00000264614	MIR5588	-	microRNA 5588	ncRNA
12534	chr1	108571051	108571230	+	0	NA	intron (NM_001010883, intron 1 of 10)	L2|LINE|L2	11040	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
160799	chr3	32989201	32989680	+	0	NA	Intergenic	Intergenic	37796	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
61631	chr13	73772721	73773480	+	0	NA	intron (NM_007249, intron 5 of 7)	L2c|LINE|L2	208856	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
1048	chr1	1888251	1889000	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSq|SINE|Alu	2462	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
65639	chr14	52313351	52316000	+	0	NA	exon (NM_000956, exon 1 of 2)	exon (NM_000956, exon 1 of 2)	363	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
132820	chr2	110569201	110569400	+	0	NA	intron (NM_032260, intron 3 of 19).2	intron (NM_032260, intron 3 of 19).2	7600	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
59750	chr13	30006271	30006450	+	0	NA	Intergenic	L1MC5a|LINE|L1	69829	NR_033889	440131		NM_001010918		LINC00544	-	long intergenic non-protein coding RNA 544	ncRNA
109178	chr19	343971	345330	+	0	NA	intron (NM_017550, intron 1 of 13)	CpG	191	NM_001346105	54531		NM_017550	ENSG00000105556	MIER2	KIAA1193|Mi-er2	MIER family member 2	protein-coding
200540	chr6	136258051	136258650	+	0	NA	3' UTR (NM_001077440, exon 12 of 12)	3' UTR (NM_001077440, exon 12 of 12)	-8039	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
57813	chr12	123146871	123147030	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	4140	NM_020845	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
110041	chr19	1465051	1466100	+	0	NA	exon (NM_001351273, exon 14 of 14)	exon (NM_001351273, exon 14 of 14)	12591	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
58702	chr12	132562071	132562450	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-19737	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
81091	chr16	4353851	4353950	+	0	NA	TTS (NM_001201472).2	TTS (NM_001201472).2	-2579	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
148348	chr20	63833001	63833300	+	0	NA	Intergenic	Intergenic	-1886	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
85099	chr16	33491421	33491880	+	0	NA	Intergenic	Intergenic	4585	NR_033866	390705		NR_033866		LOC390705	-	protein phosphatase 2 regulatory subunit B'', beta pseudogene	pseudo
29144	chr10	68601371	68601530	+	0	NA	intron (NM_030625, intron 3 of 11)	intron (NM_030625, intron 3 of 11)	41113	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
2303	chr1	8987751	8988650	+	0	NA	Intergenic	Intergenic	38145	NM_207420	155184		NM_207420	ENSG00000197241	SLC2A7	GLUT-7|GLUT7|hGLUT7	solute carrier family 2 member 7	protein-coding
134575	chr2	144235571	144235730	+	0	NA	intron (NM_001376321, intron 1 of 9)	intron (NM_001376321, intron 1 of 9)	1689	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
190690	chr6	154551	154850	+	0	NA	Intergenic	Intergenic	-6541	NR_109817	107105278		NR_109817		SEPTIN14P6	C6orf88|LINC00266-3|NCRNA00266-3|NCRNA00266C|SEPT14P6|dJ24O22.2	septin 14 pseudogene 6	pseudo
166280	chr3	112492001	112492780	+	0	NA	intron (NM_001085357, intron 1 of 3)	intron (NM_001085357, intron 1 of 3)	7082	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
174899	chr4	49092721	49093080	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	106258	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
47855	chr12	6626201	6626890	+	0	NA	intron (NM_020400, intron 1 of 1)	intron (NM_020400, intron 1 of 1)	5104	NM_001142961	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
348	chr1	1006301	1006900	+	0	NA	Intergenic	Intergenic	-6503	NM_001142467	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
199263	chr6	111854621	111855030	+	0	NA	intron (NM_002037, intron 1 of 13)	BLACKJACK|DNA|hAT-Blackjack	18246	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
205420	chr7	16649221	16649480	+	0	NA	intron (NM_001159767, intron 1 of 11)	intron (NM_001159767, intron 1 of 11)	3169	NM_014038	28969		NM_014038	ENSG00000136261	BZW2	5MP1|HSPC028|MST017|MSTP017	basic leucine zipper and W2 domains 2	protein-coding
151502	chr21	46370201	46370780	+	0	NA	intron (NM_006031, intron 15 of 46)	intron (NM_006031, intron 15 of 46)	45823	NM_001315529	5116		NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
217649	chr8	30076201	30077830	+	0	NA	intron (NM_016127, intron 1 of 5)	HAL1|LINE|L1	6049	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
104874	chr17	81864151	81864780	+	0	NA	Intergenic	Intergenic	-3930	NM_000918	5034		NM_000918	ENSG00000185624	P4HB	CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB	prolyl 4-hydroxylase subunit beta	protein-coding
208292	chr7	66054151	66054450	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-21519	NM_001024943	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
222291	chr8	133467651	133468300	+	0	NA	intron (NM_173344, intron 5 of 9)	L1MB4|LINE|L1	103912	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
54199	chr12	79861451	79861750	+	0	NA	intron (NM_001143885, intron 3 of 25)	L1PA7|LINE|L1	52311	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
86208	chr16	58022151	58023150	+	0	NA	Intergenic	Intergenic	-3104	NM_002428	4324		NM_002428	ENSG00000102996	MMP15	MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15	protein-coding
155027	chr22	37462821	37463700	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	23124	NR_029413	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
190946	chr6	2899421	2900000	+	0	NA	intron (NR_110841, intron 3 of 4)	intron (NR_110841, intron 3 of 4)	3599	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
40753	chr11	64839171	64840400	+	0	NA	intron (NM_017525, intron 5 of 36)	intron (NM_017525, intron 5 of 36)	4868	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
139355	chr2	219640871	219641180	+	0	NA	intron (NR_048551, intron 22 of 22)	MIR|SINE|MIR	13395	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
77121	chr15	78951401	78951600	+	0	NA	Intergenic	Intergenic	-6402	NM_001319137	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
140178	chr2	231659871	231660230	+	0	NA	Intergenic	AluSz6|SINE|Alu	-48475	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
226616	chr9	73171751	73172830	+	0	NA	Intergenic	Intergenic	20425	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
193279	chr6	30007301	30008200	+	0	NA	intron (NR_024240, intron 3 of 6)	intron (NR_024240, intron 3 of 6)	1779	NR_024240	3137		NR_024240	ENSG00000290574	HLA-J	CDA12|D6S203|HLA-59|HLA-CDA12	major histocompatibility complex, class I, J (pseudogene)	pseudo
32786	chr10	104614371	104614530	+	0	NA	Intergenic	Intergenic	-26840	NM_014978	22986		NM_014978	ENSG00000156395	SORCS3	SORCS	sortilin related VPS10 domain containing receptor 3	protein-coding
126110	chr2	25983821	25984200	+	0	NA	Intergenic	Intergenic	-1513	NM_002254	3797		NM_002254	ENSG00000084731	KIF3C	-	kinesin family member 3C	protein-coding
196217	chr6	42781051	42782400	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	-1771	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
50674	chr12	48848621	48848980	+	0	NA	intron (NM_004818, intron 1 of 16)	AluSx|SINE|Alu	3363	NM_004818	9416		NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
166334	chr3	112931801	112932100	+	0	NA	intron (NM_170780, intron 1 of 6)	L1MA5A|LINE|L1	43153	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
165866	chr3	106004101	106004500	+	0	NA	Intergenic	Intergenic	-134899	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
77828	chr15	88636001	88637130	+	0	NA	intron (NM_001303234, intron 2 of 4)	AluJr|SINE|Alu	933	NM_001303233	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
166001	chr3	108133101	108133300	+	0	NA	intron (NR_110028, intron 1 of 2)	intron (NR_110028, intron 1 of 2)	7379	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
58348	chr12	131592921	131593250	+	0	NA	Intergenic	Intergenic	55036	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
138994	chr2	218318151	218318450	+	0	NA	intron (NM_015488, intron 2 of 9)	MamRep605|LTR?|LTR?	-4879	NM_022572	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
201993	chr6	152356751	152357000	+	0	NA	intron (NM_033071, intron 66 of 145)	intron (NM_033071, intron 66 of 145)	-23655	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
70185	chr14	100404851	100404950	+	0	NA	intron (NM_001350949, intron 2 of 6)	intron (NM_001350949, intron 2 of 6)	28415	NM_001350947	79446		NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
37770	chr11	32162901	32163100	+	0	NA	Intergenic	Intergenic	-19088	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA
50715	chr12	48956471	48958330	+	0	NA	promoter-TSS (NM_001659)	promoter-TSS (NM_001659)	87	NM_001659	377		NM_001659	ENSG00000134287	ARF3	-	ADP ribosylation factor 3	protein-coding
230374	chr9	128077871	128078030	+	0	NA	intron (NM_001006641, intron 1 of 9)	AluSg|SINE|Alu	9750	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
134462	chr2	143217671	143217980	+	0	NA	intron (NM_018460, intron 4 of 13)	intron (NM_018460, intron 4 of 13)	88406	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
119250	chr19	39497521	39499830	+	0	NA	promoter-TSS (NM_203486)	promoter-TSS (NM_203486)	-272	NM_016941	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
136913	chr2	189664751	189664850	+	0	NA	intron (NM_001353494, intron 2 of 3)	L1ME4a|LINE|L1	3341	NM_019048	54529		NM_019048	ENSG00000138381	ASNSD1	NBLA00058|NS3TP1	asparagine synthetase domain containing 1	protein-coding
18354	chr1	161225351	161226430	+	0	NA	promoter-TSS (NM_032174)	promoter-TSS (NM_032174)	-49	NM_001286373	84134		NM_032174	ENSG00000158882	TOMM40L	TOMM40B	translocase of outer mitochondrial membrane 40 like	protein-coding
40273	chr11	63829601	63830200	+	0	NA	Intergenic	L2b|LINE|L2	-9028	NM_001039469	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
95967	chr17	39147721	39147980	+	0	NA	intron (NM_020405, intron 1 of 13)	L2a|LINE|L2	3787	NM_020405	57125		NM_020405	ENSG00000161381	PLXDC1	TEM3|TEM7	plexin domain containing 1	protein-coding
109062	chr18	79901121	79901580	+	0	NA	Intergenic	Intergenic	37682	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
89706	chr16	89404651	89404750	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-26218	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
203973	chr7	1591601	1593730	+	0	NA	Intergenic	Intergenic	-21805	NR_001288	260341		NR_001288		TFAMP1	MTTF1|TCF6L1	transcription factor A, mitochondrial pseudogene 1	pseudo
191299	chr6	6657171	6657830	+	0	NA	Intergenic	LTR45B|LTR|ERV1	-34674	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
32053	chr10	101059771	101060300	+	0	NA	Intergenic	Penelope1_Vert|LINE|Penelope	-1954	NR_135067	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
143705	chr20	32207171	32209530	+	0	NA	promoter-TSS (NM_002657)	promoter-TSS (NM_002657)	470	NM_015352	23509		NM_015352	ENSG00000101346	POFUT1	DDD2|FUT12|O-FUT|O-Fuc-T|O-FucT-1|OFUCT1	protein O-fucosyltransferase 1	protein-coding
106528	chr18	21123371	21123900	+	0	NA	Intergenic	Intergenic	-11822	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
136282	chr2	174718371	174718530	+	0	NA	Intergenic	Intergenic	-1350	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
19577	chr1	179231921	179232180	+	0	NA	Intergenic	Intergenic	-2366	NM_001136001	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
204826	chr7	5694871	5696550	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-15249	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
214942	chr7	151755121	151755380	+	0	NA	intron (NM_016203, intron 3 of 15)	LTR16A|LTR|ERVL	-18936	NM_001304527	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
130326	chr2	84980951	84981050	+	0	NA	intron (NM_020122, intron 1 of 6)	MamSINE1|SINE|tRNA-RTE	9839	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
41788	chr11	66854401	66855100	+	0	NA	intron (NM_022172, intron 10 of 20)	intron (NM_022172, intron 10 of 20)	-2314	NM_024036	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
40086	chr11	62785971	62788750	+	0	NA	promoter-TSS (NM_001363601)	promoter-TSS (NM_001363601)	-42	NM_001363601	374395		NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
37250	chr11	14634751	14635130	+	0	NA	intron (NM_148976, intron 1 of 10)	intron (NM_148976, intron 1 of 10)	8694	NM_148976	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
206984	chr7	38320551	38320650	+	0	NA	Intergenic	L1PB4|LINE|L1	-20977	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
126069	chr2	25788171	25788930	+	0	NA	intron (NM_001369347, intron 1 of 9)	L1M5|LINE|L1	6141	NM_001369347	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
73972	chr15	51878821	51879480	+	0	NA	intron (NM_014547, intron 3 of 9)	intron (NM_014547, intron 3 of 9)	44970	NR_109775	100422556		NR_109775		LOC100422556	-	LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene	pseudo
105353	chr17	82639421	82640380	+	0	NA	intron (NM_019613, intron 2 of 9)	intron (NM_019613, intron 2 of 9)	8544	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
162822	chr3	49162301	49162580	+	0	NA	TTS (NM_022903)	TTS (NM_022903)	3891	NM_022903	64925		NM_022903	ENSG00000177352	CCDC71	-	coiled-coil domain containing 71	protein-coding
12115	chr1	100044371	100045130	+	0	NA	intron (NM_033055, intron 1 of 11)	AluSp|SINE|Alu	6655	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
9658	chr1	52635321	52635980	+	0	NA	intron (NR_135157, intron 1 of 4)	LTR8B|LTR|ERV1	2482	NR_135157	348378		NM_001042693	ENSG00000182183	SHISAL2A	FAM159A|PRO7171|WWLS2783	shisa like 2A	protein-coding
199686	chr6	122751271	122751680	+	0	NA	intron (NM_001319042, intron 1 of 3)	intron (NM_001319042, intron 1 of 3)	2274	NM_001319042	2173		NM_001446	ENSG00000164434	FABP7	B-FABP|BLBP|FABPB|MRG	fatty acid binding protein 7	protein-coding
73301	chr15	41879101	41879500	+	0	NA	exon (NM_016642, exon 16 of 68)	exon (NM_016642, exon 16 of 68)	-12749	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
54397	chr12	89947571	89948450	+	0	NA	intron (NR_135019, intron 1 of 2)	MIR3|SINE|MIR	317	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
229287	chr9	120746921	120747180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-32580	NM_001080497	1955		NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
7241	chr1	32342421	32342750	+	0	NA	Intergenic	(CCCCA)n|Simple_repeat|Simple_repeat	-6352	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
59270	chr13	24190571	24190730	+	0	NA	intron (NM_153023, intron 1 of 11)	Tigger1|DNA|TcMar-Tigger	28234	NR_031753	100313842		NR_031753	ENSG00000252695	MIR2276	-	microRNA 2276	ncRNA
151935	chr22	19103421	19103880	+	0	NA	intron (NM_001184781, intron 1 of 9)	AluY|SINE|Alu	18762	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
16825	chr1	155627851	155628250	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	17832	NM_018116	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
164460	chr3	59709871	59710330	+	0	NA	Intergenic	Intergenic	-51603	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
140062	chr2	231406551	231406770	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	10950	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
41123	chr11	65564071	65564230	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5791	NM_001130144	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
172430	chr4	1864171	1864530	+	0	NA	Intergenic	Intergenic	-7043	NM_001042424	7468		NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|RAUST|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding
72997	chr15	40676501	40676700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	18505	NR_040058	100505648		NR_040058	ENSG00000245849	RAD51-AS1	TODRA	RAD51 antisense RNA 1	ncRNA
228796	chr9	111870671	111871030	+	0	NA	Intergenic	MER21B|LTR|ERVL	-25964	NM_003358	7357		NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding
99528	chr17	50350701	50351100	+	0	NA	intron (NM_022167, intron 1 of 10)	L2a|LINE|L2	4774	NR_110010	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
114192	chr19	11416071	11416450	+	0	NA	intron (NM_001161616, intron 4 of 18)	AluSx3|SINE|Alu	3054	NM_001161616	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
154112	chr22	31094021	31094380	+	0	NA	intron (NR_168475, intron 12 of 20)	intron (NR_168475, intron 12 of 20)	9204	NM_001207018	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
3222	chr1	13769821	13770180	+	0	NA	intron (NM_001135610, intron 6 of 7)	MER20|DNA|hAT-Charlie	20585	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
67965	chr14	74867521	74868430	+	0	NA	intron (NR_169190, intron 1 of 5)	intron (NR_169190, intron 1 of 5)	8170	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
129084	chr2	65110871	65111330	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSx3|SINE|Alu	19006	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
139967	chr2	230876251	230876350	+	0	NA	intron (NM_001012516, intron 3 of 4)	intron (NM_001012516, intron 3 of 4)	-10246	NR_038238	151484		NR_038238	ENSG00000232520	GCSIR	Lnc-ITM2C-1	GPR55 cis regulatory suppressor of immune response RNA	ncRNA
209969	chr7	92755171	92755330	+	0	NA	intron (NM_001145306, intron 3 of 7)	intron (NM_001145306, intron 3 of 7)	78709	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
170891	chr3	193605771	193606330	+	0	NA	intron (NM_001354664, intron 2 of 29)	intron (NM_001354664, intron 2 of 29)	12842	NM_001354664	4976		NM_015560	ENSG00000198836	OPA1	BERHS|MGM1|MTDPS14|NPG|NTG|largeG	OPA1 mitochondrial dynamin like GTPase	protein-coding
44986	chr11	116933351	116933650	+	0	NA	intron (NM_001366686, intron 3 of 24)	L1MD2|LINE|L1	-95550	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
192975	chr6	27891871	27892100	+	0	NA	TTS (NM_003514)	TTS (NM_003514)	-1159	NM_003535	8356		NM_003535	ENSG00000197153	H3C12	H3/j|H3C1|H3C10|H3C11|H3C2|H3C3|H3C4|H3C6|H3C7|H3C8|H3FJ|HIST1H3J	H3 clustered histone 12	protein-coding
155276	chr22	38082151	38082250	+	0	NA	intron (NM_013356, intron 3 of 5)	CpG-19044	1984	NM_013356	23539		NM_013356	ENSG00000100156	SLC16A8	MCT3|REMP	solute carrier family 16 member 8	protein-coding
114049	chr19	10974251	10974750	+	0	NA	intron (NM_001374457, intron 1 of 33)	L1ME4a|LINE|L1	-9624	NM_001128845	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
226962	chr9	79945071	79945330	+	0	NA	intron (NR_121213, intron 1 of 2)	MER91B|DNA|hAT-Tip100	-29823	NR_121212	101927477		NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
67990	chr14	74939051	74939350	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-15940	NR_163405	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
164791	chr3	69306351	69307530	+	0	NA	intron (NM_015123, intron 3 of 22)	intron (NM_015123, intron 3 of 22)	79148	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
79481	chr16	766851	766950	+	0	NA	exon (NM_013404, exon 14 of 17)	exon (NM_013404, exon 14 of 17)	-3283	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
120400	chr19	43757321	43757580	+	0	NA	Intergenic	L1MC|LINE|L1	-2488	NM_019108	56006		NM_019108	ENSG00000105771	SMG9	C19orf61|F17127_1|HBMS|NEDITPO	SMG9 nonsense mediated mRNA decay factor	protein-coding
185994	chr5	133612401	133612800	+	0	NA	promoter-TSS (NM_015082)	promoter-TSS (NM_015082)	-59	NM_015082	23105		NM_015082	ENSG00000053108	FSTL4	-	follistatin like 4	protein-coding
132571	chr2	106492001	106492200	+	0	NA	intron (NM_001349727, intron 2 of 5)	intron (NM_001349727, intron 2 of 5)	4736	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
205602	chr7	21945501	21946230	+	0	NA	promoter-TSS (NM_018719)	promoter-TSS (NM_018719)	34	NM_018719	55536		NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
103372	chr17	78129801	78130000	+	0	NA	promoter-TSS (NM_152468)	promoter-TSS (NM_152468)	-871	NM_152468	147138		NM_152468	ENSG00000167895	TMC8	EV2|EVER2|EVIN2	transmembrane channel like 8	protein-coding
77730	chr15	85712701	85712900	+	0	NA	intron (NM_007200, intron 19 of 36)	AluSz|SINE|Alu	45925	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
228768	chr9	110253621	110253880	+	0	NA	intron (NM_003329, intron 1 of 4)	intron (NM_003329, intron 1 of 4)	2757	NM_003329	7295		NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1|TXN1|Trx80	thioredoxin	protein-coding
15	chr1	25551	26350	+	0	NA	intron (NR_024540, intron 1 of 10)	intron (NR_024540, intron 1 of 10)	3420	NR_024540	653635		NR_024540		WASH7P	FAM39F|WASH5P	WASP family homolog 7, pseudogene	pseudo
236312	chrX	68693601	68693800	+	0	NA	promoter-TSS (NM_001142504)	promoter-TSS (NM_001142504)	61	NM_001142504	9754		NM_014725	ENSG00000130052	STARD8	ARHGAP38|DLC3|STARTGAP3	StAR related lipid transfer domain containing 8	protein-coding
167595	chr3	129564921	129565300	+	0	NA	intron (NM_015103, intron 25 of 35)	intron (NM_015103, intron 25 of 35)	16725	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
135254	chr2	159721351	159721650	+	0	NA	intron (NM_001376237, intron 2 of 10)	intron (NM_001376237, intron 2 of 10)	8994	NM_001376255	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
223647	chr8	144353201	144353500	+	0	NA	exon (NM_001252404, exon 4 of 4)	exon (NM_001252404, exon 4 of 4)	1581	NM_001252404	340393		NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
55202	chr12	101700351	101700650	+	0	NA	intron (NM_020244, intron 1 of 8)	intron (NM_020244, intron 1 of 8)	2860	NM_020244	56994		NM_020244	ENSG00000111666	CHPT1	CPT|CPT1	choline phosphotransferase 1	protein-coding
183889	chr5	87330501	87331100	+	0	NA	intron (NM_001364075, intron 8 of 8)	intron (NM_001364075, intron 8 of 8)	-7172	NR_130929	644285		NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
86186	chr16	57892771	57892930	+	0	NA	intron (NM_001297, intron 31 of 32)	L2a|LINE|L2	78278	NM_001135639	1258		NM_001297	ENSG00000070729	CNGB1	CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45	cyclic nucleotide gated channel subunit beta 1	protein-coding
27890	chr10	41877521	41878100	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	490235	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
112523	chr19	6504451	6505150	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-1952	NM_001289123	10382		NM_006087	ENSG00000104833	TUBB4A	DYT4|TUBB4|beta-5	tubulin beta 4A class IVa	protein-coding
90499	chr17	1451721	1451980	+	0	NA	intron (NM_016823, intron 1 of 2)	AluSq2|SINE|Alu	4382	NM_005206	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
193246	chr6	29938421	29939450	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-3535	NM_001242758	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
129317	chr2	68718921	68719180	+	0	NA	Intergenic	MER21C|LTR|ERVL	-15761	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
205952	chr7	26145271	26145630	+	0	NA	Intergenic	MER21C|LTR|ERVL	-6748	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
39994	chr11	62627071	62627230	+	0	NA	intron (NM_198334, intron 18 of 23)	intron (NM_198334, intron 18 of 23)	-5164	NM_001288723	26229		NM_012200	ENSG00000149541	B3GAT3	GLCATI|JDSCD|glcUAT-I	beta-1,3-glucuronyltransferase 3	protein-coding
96503	chr17	40313201	40313800	+	0	NA	intron (NM_000964, intron 1 of 8)	MER91C|DNA|hAT-Tip100	4320	NM_000964	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
24576	chr1	245143521	245143780	+	0	NA	Intergenic	Intergenic	-11335	NM_018012	55083		NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding
190979	chr6	2988021	2991330	+	0	NA	non-coding (NR_026856, exon 2 of 3)	non-coding (NR_026856, exon 2 of 3)	1708	NR_026856	401232		NM_207495		LINC01011	-	long intergenic non-protein coding RNA 1011	ncRNA
185129	chr5	119294471	119294900	+	0	NA	intron (NM_001077654, intron 1 of 1)	L1PA3|LINE|L1	25926	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
114343	chr19	12166901	12167250	+	0	NA	intron (NM_001348013, intron 1 of 2)	MER92B|LTR|ERV1	3979	NM_003437	7695		NM_003437	ENSG00000196646	ZNF136	pHZ-20	zinc finger protein 136	protein-coding
21541	chr1	206013221	206013480	+	0	NA	intron (NM_001910, intron 6 of 8)	intron (NM_001910, intron 6 of 8)	-9955	NM_001304839	338382		NM_177403	ENSG00000276600	RAB7B	RAB7	RAB7B, member RAS oncogene family	protein-coding
93887	chr17	21211901	21212300	+	0	NA	intron (NR_024547, intron 1 of 2)	intron (NR_024547, intron 1 of 2)	2061	NR_024547	8834		NM_003876	ENSG00000178307	TMEM11	C17orf35|PM1|PMI	transmembrane protein 11	protein-coding
25549	chr10	7478871	7479850	+	0	NA	Intergenic	Intergenic	-67874	NM_001029880	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
18633	chr1	166838901	166840500	+	0	NA	intron (NM_001314014, intron 1 of 3)	CpG	225	NM_001314014	57645		NM_017542	ENSG00000143157	POGK	BASS2|KRBOX2|LST003	pogo transposable element derived with KRAB domain	protein-coding
157048	chr22	42577251	42577550	+	0	NA	intron (NR_002184, intron 3 of 6)	intron (NR_002184, intron 3 of 6)	4611	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
114227	chr19	11479101	11479830	+	0	NA	intron (NM_001420, intron 1 of 6)	intron (NM_001420, intron 1 of 6)	1581	NM_032281	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
62737	chr13	106534911	106536200	+	0	NA	5' UTR (NM_001372058, exon 1 of 3)	5' UTR (NM_001372058, exon 1 of 3)	107	NM_001372057	1948		NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5|ephrin-B2	ephrin B2	protein-coding
27865	chr10	41803351	41803450	+	0	NA	Intergenic	L1PA2|LINE|L1	564645	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
92848	chr17	16267821	16268680	+	0	NA	intron (NM_004278, intron 2 of 6)	L2b|LINE|L2	-13764	NR_031698	100302124		NR_031698	ENSG00000221355	MIR1288	MIRN1288|hsa-mir-1288	microRNA 1288	ncRNA
217676	chr8	30107071	30107230	+	0	NA	3' UTR (NM_015344, exon 4 of 4)	3' UTR (NM_015344, exon 4 of 4)	11742	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
45616	chr11	118909601	118909900	+	0	NA	promoter-TSS (NR_039713)	promoter-TSS (NR_039713)	792	NM_182557	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
111558	chr19	4048901	4049800	+	0	NA	intron (NM_015898, intron 2 of 2)	intron (NM_015898, intron 2 of 2)	16179	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
117170	chr19	19345801	19346900	+	0	NA	intron (NM_015329, intron 12 of 18)	intron (NM_015329, intron 12 of 18)	25521	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
69432	chr14	94128271	94128500	+	0	NA	intron (NM_032036, intron 3 of 3)	intron (NM_032036, intron 3 of 3)	1219	NM_032036	83982		NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	interferon alpha inducible protein 27 like 2	protein-coding
214024	chr7	143283551	143284130	+	0	NA	intron (NR_133932, intron 2 of 2)	intron (NR_133932, intron 2 of 2)	-1059	NR_104253	135932		NM_153345	ENSG00000178826	TMEM139	-	transmembrane protein 139	protein-coding
57449	chr12	121911251	121911550	+	0	NA	intron (NR_048555, intron 3 of 4)	L1MB3|LINE|L1	-7192	NM_144668	144406		NM_144668	ENSG00000158023	CFAP251	CaM-IP4|SPGF33|WDR66	cilia and flagella associated protein 251	protein-coding
20763	chr1	201004471	201004630	+	0	NA	intron (NM_017596, intron 6 of 33)	intron (NM_017596, intron 6 of 33)	19164	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
175515	chr4	74308201	74308600	+	0	NA	promoter-TSS (NM_001270990)	promoter-TSS (NM_001270990)	-70	NR_073114	255324		NM_001013442	ENSG00000182585	EPGN	ALGV3072|EPG|PRO9904	epithelial mitogen	protein-coding
13943	chr1	120335601	120335800	+	0	NA	Intergenic	Intergenic	-79327	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
94572	chr17	29628171	29628330	+	0	NA	3' UTR (NM_001282129, exon 16 of 16)	3' UTR (NM_001282129, exon 16 of 16)	-6827	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
15374	chr1	150148971	150150690	+	0	NA	promoter-TSS (NM_001304723)	promoter-TSS (NM_001304723)	-86	NM_016274	51177		NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding
81321	chr16	4708771	4709030	+	0	NA	intron (NM_133450, intron 7 of 17)	AluSc8|SINE|Alu	15182	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
85329	chr16	50067471	50067930	+	0	NA	intron (NM_001329730, intron 3 of 15)	L2a|LINE|L2	1730	NM_182922	55027		NM_017939	ENSG00000155393	HEATR3	DBA21|SYO1	HEAT repeat containing 3	protein-coding
92141	chr17	7632221	7632880	+	0	NA	intron (NM_001146280, intron 6 of 6)	MamRep1879|DNA|hAT-Tip100?	2415	NM_001146279	6462		NM_001040	ENSG00000129214	SHBG	ABP|SBP|TEBG	sex hormone binding globulin	protein-coding
224295	chr9	6437551	6437650	+	0	NA	intron (NR_046386, intron 3 of 16)	L3b|LINE|CR1	24401	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
105059	chr17	82081771	82081930	+	0	NA	intron (NM_004104, intron 36 of 42)	intron (NM_004104, intron 36 of 42)	8290	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
235057	chrX	40145201	40145400	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	31977	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
26135	chr10	13788151	13788450	+	0	NA	intron (NM_018027, intron 5 of 24)	MER74A|LTR|ERVL	-80733	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
69254	chr14	92973351	92973530	+	0	NA	intron (NM_014216, intron 5 of 10).2	intron (NM_014216, intron 5 of 10).2	50290	NM_001301690	1113		NM_001275	ENSG00000100604	CHGA	CGA|PHE5|PHES	chromogranin A	protein-coding
126363	chr2	27437771	27438330	+	0	NA	intron (NM_001321361, intron 11 of 18)	AluSz|SINE|Alu	-4316	NM_001168364	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
43010	chr11	73981501	73982030	+	0	NA	intron (NM_001381944, intron 1 of 7)	intron (NM_001381944, intron 1 of 7)	1078	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
185272	chr5	124748501	124748900	+	0	NA	5' UTR (NM_001385619, exon 1 of 10)	5' UTR (NM_001385619, exon 1 of 10)	124	NM_001385621	57507		NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
6432	chr1	28199071	28200750	+	0	NA	TTS (NM_014280)	TTS (NM_014280)	-5974	NM_001164721	5724		NM_000952	ENSG00000169403	PTAFR	PAFR	platelet activating factor receptor	protein-coding
90563	chr17	1511801	1512000	+	0	NA	intron (NM_016532, intron 3 of 11)	intron (NM_016532, intron 3 of 11)	4712	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
19731	chr1	181136421	181137430	+	0	NA	Intergenic	Intergenic	-37559	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
6765	chr1	30743451	30744570	+	0	NA	intron (NM_006762, intron 1 of 7)	MIRb|SINE|MIR	-4778	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
61137	chr13	48585551	48585850	+	0	NA	Intergenic	Intergenic	-4799	NR_051983	100129597		NR_051983	ENSG00000233610	LINC00462	-	long intergenic non-protein coding RNA 462	ncRNA
31208	chr10	91247721	91248330	+	0	NA	intron (NM_032373, intron 3 of 9)	MLT1H|LTR|ERVL-MaLR	27362	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
140236	chr2	231785201	231785430	+	0	NA	intron (NM_001282949, intron 1 of 5)	L2|LINE|L2	-1068	NM_001282952	64708		NM_022730	ENSG00000144524	COPS7B	CSN7B|SGN7b	COP9 signalosome subunit 7B	protein-coding
174371	chr4	38889301	38889530	+	0	NA	intron (NM_138389, intron 3 of 14)	intron (NM_138389, intron 3 of 14)	21383	NR_030300	693159		NR_030300	ENSG00000207944	MIR574	MIR574-3p|MIRN574|hsa-mir-574|mir-574	microRNA 574	ncRNA
24772	chr1	248855051	248855150	+	0	NA	intron (NM_017865, intron 9 of 11)	MIR|SINE|MIR	3985	NM_001350073	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
168270	chr3	141474271	141474880	+	0	NA	Intergenic	Intergenic	-12452	NM_001303246	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
187169	chr5	140634301	140634500	+	0	NA	promoter-TSS (NM_001040021)	promoter-TSS (NM_001040021)	-699	NM_001040021	929		NM_000591	ENSG00000170458	CD14	-	CD14 molecule	protein-coding
233143	chr9	137161071	137162030	+	0	NA	intron (NM_007327, intron 10 of 19)	CpG-29198	7720	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
91978	chr17	7414501	7415280	+	0	NA	intron (NM_020795, intron 4 of 6)	intron (NM_020795, intron 4 of 6)	-5434	NM_199339	374768		NM_199339	ENSG00000181323	SPEM1	C17orf83	spermatid maturation 1	protein-coding
184116	chr5	94551871	94552030	+	0	NA	intron (NM_001385729, intron 2 of 5)	L1M2|LINE|L1	66175	NM_001385730	285600		NM_173665	ENSG00000185261	KIAA0825	C5orf36|PAPA10	KIAA0825	protein-coding
200718	chr6	137571521	137572180	+	0	NA	Intergenic	Intergenic	-77456	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
52957	chr12	57465251	57465550	+	0	NA	intron (NM_001160045, intron 3 of 9)	intron (NM_001160045, intron 3 of 9)	5249	NM_001167609	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
133993	chr2	130833771	130834130	+	0	NA	Intergenic	AluY|SINE|Alu	-2964	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
130688	chr2	86518501	86518980	+	0	NA	intron (NR_036454, intron 1 of 3)	MER20|DNA|hAT-Charlie	44703	NM_001193517	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
85570	chr16	53463321	53463980	+	0	NA	intron (NM_001323609, intron 11 of 20)	AluSq|SINE|Alu	28031	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
220573	chr8	100809301	100811300	+	0	NA	Intergenic	AluSz|SINE|Alu	-88212	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
74357	chr15	58690751	58691250	+	0	NA	non-coding (NR_073415, exon 1 of 1)	non-coding (NR_073415, exon 1 of 1)	2607	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
36091	chr11	3013821	3015130	+	0	NA	intron (NR_165428, intron 17 of 22)	intron (NR_165428, intron 17 of 22)	-14919	NR_046580	100852407		NR_046580	ENSG00000247473	CARS1-AS1	CARS-AS1	CARS1 antisense RNA 1	ncRNA
52435	chr12	55831771	55832330	+	0	NA	intron (NR_036479, intron 3 of 4)	intron (NR_036479, intron 3 of 4)	-2414	NM_032364	85406		NM_032364	ENSG00000135392	DNAJC14	DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding
199328	chr6	113856021	113856380	+	0	NA	Intergenic	Intergenic	-1145	NM_002356	4082		NM_002356	ENSG00000277443	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
51403	chr12	51992951	51993880	+	0	NA	intron (NM_020327, intron 8 of 8)	intron (NM_020327, intron 8 of 8)	-13531	NM_181711	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
221676	chr8	126318501	126319000	+	0	NA	Intergenic	L1PA2|LINE|L1	-6745	NR_125421	101927657		NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA
165659	chr3	101853151	101854000	+	0	NA	exon (NM_001005474, exon 6 of 13)	exon (NM_001005474, exon 6 of 13)	4061	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
30393	chr10	78205521	78205780	+	0	NA	Intergenic	Intergenic	-42975	NR_038985	100132987		NR_038985	ENSG00000230417	LINC00856	-	long intergenic non-protein coding RNA 856	ncRNA
127558	chr2	42353601	42354100	+	0	NA	intron (NM_001319037, intron 1 of 2)	intron (NM_001319037, intron 1 of 2)	6188	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
121170	chr19	46416301	46416830	+	0	NA	Intergenic	Intergenic	-3001	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
118842	chr19	38633251	38633550	+	0	NA	intron (NM_013234, intron 6 of 7).2	L1MC4a|LINE|L1	14212	NM_013234	27335		NM_013234	ENSG00000178982	EIF3K	ARG134|EIF3-p28|EIF3S12|HSPC029|M9|MSTP001|PLAC-24|PLAC24|PRO1474|PTD001	eukaryotic translation initiation factor 3 subunit K	protein-coding
62620	chr13	100608851	100609500	+	0	NA	intron (NR_146794, intron 16 of 18)	MER113|DNA|hAT-Charlie	-20383	NM_001195087	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
191277	chr6	6494201	6494680	+	0	NA	intron (NR_026970, intron 3 of 7)	AluSz|SINE|Alu	-94280	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
154533	chr22	36151821	36152280	+	0	NA	intron (NM_030644, intron 1 of 4)	intron (NM_030644, intron 1 of 4)	8705	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
148367	chr20	63862651	63863000	+	0	NA	non-coding (NR_165312, exon 1 of 1)	non-coding (NR_165312, exon 1 of 1)	1327	NM_080622	140701		NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
179551	chr4	185134121	185135000	+	0	NA	Intergenic	Intergenic	-8706	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
108926	chr18	79456271	79456630	+	0	NA	intron (NM_172389, intron 6 of 9)	intron (NM_172389, intron 6 of 9)	56151	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
2910	chr1	11682901	11683350	+	0	NA	intron (NM_001127325, intron 1 of 8)	intron (NM_001127325, intron 1 of 8)	-1977	NM_006341	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
77627	chr15	85413051	85413880	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	32862	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
87015	chr16	68258051	68258350	+	0	NA	intron (NM_001363551, intron 5 of 5)	intron (NM_001363551, intron 5 of 5)	-6326	NM_003983	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
195750	chr6	39934071	39934550	+	0	NA	promoter-TSS (NM_001358534)	promoter-TSS (NM_001358534)	-87	NM_001358534	4337		NM_005942	ENSG00000124615	MOCS1	MIG11|MOCOD|MOCS1A|MOCS1B	molybdenum cofactor synthesis 1	protein-coding
130415	chr2	85343121	85343830	+	0	NA	intron (NM_017750, intron 10 of 10)	intron (NM_017750, intron 10 of 10)	11053	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
109236	chr19	503421	503880	+	0	NA	intron (NM_130760, intron 4 of 4)	AluJo|SINE|Alu	-3847	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
165909	chr3	106566371	106566530	+	0	NA	Intergenic	L1MCa|LINE|L1	674188	NR_028303	100302640		NR_028303		LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA
152237	chr22	20162501	20163530	+	0	NA	Intergenic	Intergenic	-11960	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
11927	chr1	93680721	93681080	+	0	NA	intron (NM_001261408, intron 3 of 13)	CpG	470	NM_001261409	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
26703	chr10	22648371	22648880	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	65483	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
94776	chr17	30939071	30939450	+	0	NA	intron (NM_001346716, intron 5 of 10)	intron (NM_001346716, intron 5 of 10)	17315	NM_018404	55803		NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
219468	chr8	73348001	73348400	+	0	NA	intron (NR_125388, intron 1 of 5)	intron (NR_125388, intron 1 of 5)	8261	NR_125388	101926926		NR_125388	ENSG00000250295	RDH10-AS1	-	RDH10 antisense RNA 1	ncRNA
182067	chr5	55950321	55950880	+	0	NA	intron (NR_157112, intron 14 of 17)	L2|LINE|L2	44363	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
73609	chr15	44560251	44560350	+	0	NA	exon (NM_001284336, exon 5 of 6)	exon (NM_001284336, exon 5 of 6)	23153	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
91741	chr17	6750101	6750550	+	0	NA	Intergenic	Intergenic	-5122	NM_001353135	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
95749	chr17	38599451	38599830	+	0	NA	intron (NM_025248, intron 1 of 18)	L3b|LINE|CR1	6312	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
73063	chr15	40907001	40909250	+	0	NA	intron (NR_135836, intron 1 of 1)	intron (NR_135836, intron 1 of 1)	1316	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
41316	chr11	65891791	65892700	+	0	NA	TTS (NM_006848)	TTS (NM_006848)	1572	NM_006848	11007		NM_006848	ENSG00000175602	CCDC85B	DIPA	coiled-coil domain containing 85B	protein-coding
29728	chr10	72088201	72089390	+	0	NA	promoter-TSS (NM_001244950)	promoter-TSS (NM_001244950)	237	NM_014767	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
63267	chr13	113956021	113956700	+	0	NA	3' UTR (NM_001365455, exon 7 of 7)	3' UTR (NM_001365455, exon 7 of 7)	17716	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
205819	chr7	24653451	24653800	+	0	NA	intron (NM_001303037, intron 5 of 11)	intron (NM_001303037, intron 5 of 11)	80173	NM_001303037	51678		NM_016447	ENSG00000105926	PALS2	MPP6|VAM-1|VAM1|p55T	protein associated with LIN7 2, MAGUK p55 family member	protein-coding
48045	chr12	6968171	6968330	+	0	NA	promoter-TSS (NR_003010)	promoter-TSS (NR_003010)	-644	NR_003010	677777		NR_003010	ENSG00000238795	SCARNA12	U89	small Cajal body-specific RNA 12	ncRNA
3077	chr1	12185801	12186600	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	-5513	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
33430	chr10	118757321	118757580	+	0	NA	Intergenic	L1M5|LINE|L1	-2480	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
135817	chr2	170341951	170342250	+	0	NA	intron (NR_110576, intron 3 of 3)	intron (NR_110576, intron 3 of 3)	8843	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
141064	chr2	238260871	238261430	+	0	NA	intron (NM_022817, intron 12 of 22)	intron (NM_022817, intron 12 of 22)	-21112	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
89502	chr16	89156251	89157080	+	0	NA	TTS (NM_001127214)	TTS (NM_001127214)	-2555	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
220240	chr8	96853621	96854550	+	0	NA	intron (NM_016134, intron 3 of 7)	intron (NM_016134, intron 3 of 7)	208843	NM_016134	10404		NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding
42881	chr11	73342451	73342950	+	0	NA	intron (NM_014786, intron 1 of 20)	CpG	-33339	NR_147696	100287837		NR_147696	ENSG00000257038	ARHGEF17-AS1	-	ARHGEF17 antisense RNA 1	ncRNA
4981	chr1	24201721	24202480	+	0	NA	intron (NR_027087, intron 1 of 2)	intron (NR_027087, intron 1 of 2)	1860	NR_027087	284632		NR_027087	ENSG00000230023	LINC02800	-	long intergenic non-protein coding RNA 2800	ncRNA
85621	chr16	54042251	54042630	+	0	NA	intron (NM_001363988, intron 9 of 9)	L1HS|LINE|L1	3047	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
132419	chr2	105819551	105819650	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-32247	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
81629	chr16	10876401	10877630	+	0	NA	promoter-TSS (NR_104444)	promoter-TSS (NR_104444)	-183	NM_000246	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
202417	chr6	157891201	157891880	+	0	NA	intron (NM_016224, intron 4 of 17)	intron (NM_016224, intron 4 of 17)	68294	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
11674	chr1	91826101	91826500	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	59851	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
88550	chr16	85464451	85464750	+	0	NA	Intergenic	MIRb|SINE|MIR	-146809	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
169662	chr3	171538451	171538850	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-78242	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
183253	chr5	76416501	76416900	+	0	NA	intron (NM_006633, intron 1 of 35)	AluSx4|SINE|Alu	13415	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
53806	chr12	69247451	69247550	+	0	NA	intron (NM_001300947, intron 1 of 10)	intron (NM_001300947, intron 1 of 10)	7931	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
42188	chr11	67984101	67984800	+	0	NA	Intergenic	SATR1|Satellite|Satellite	19647	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
184733	chr5	109690701	109691750	+	0	NA	intron (NM_002372, intron 1 of 21)	intron (NM_002372, intron 1 of 21)	1859	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
77974	chr15	89402921	89403180	+	0	NA	intron (NR_160724, intron 1 of 2)	intron (NR_160724, intron 1 of 2)	2879	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
219496	chr8	73935371	73935530	+	0	NA	Intergenic	L1MC5|LINE|L1	36458	NM_001204861	6921		NM_005648	ENSG00000154582	ELOC	SIII|TCEB1	elongin C	protein-coding
62571	chr13	99974801	99975300	+	0	NA	Intergenic	Intergenic	-3141	NM_033132	85416		NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding
44591	chr11	108286271	108286630	+	0	NA	intron (NM_000051, intron 26 of 62)	MER51A|LTR|ERV1	62921	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
64142	chr14	22880851	22881230	+	0	NA	3' UTR (NM_001329226, exon 8 of 8)	3' UTR (NM_001329226, exon 8 of 8)	-2182	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
170346	chr3	184542271	184542650	+	0	NA	Intergenic	Intergenic	14458	NR_046593	100874079		NR_046593	ENSG00000230215	LINC01840	EIF2B5-AS1	long intergenic non-protein coding RNA 1840	ncRNA
145295	chr20	41039801	41040000	+	0	NA	intron (NM_003286, intron 2 of 20)	AluY|SINE|Alu	11078	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
11715	chr1	91872521	91873380	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	13201	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
16070	chr1	153404771	153405030	+	0	NA	intron (NM_001319198, intron 1 of 2)	intron (NM_001319198, intron 1 of 2)	-11620	NM_176823	338324		NM_176823	ENSG00000184330	S100A7A	NICE-2|NICE2|S100A15|S100A7L1|S100A7f	S100 calcium binding protein A7A	protein-coding
25287	chr10	6163381	6165330	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	-12093	NR_039698	100628560		NR_039698	ENSG00000283634	MIR3155B	hsa-mir-3155b	microRNA 3155b	ncRNA
174658	chr4	40908601	40909000	+	0	NA	intron (NM_173075, intron 9 of 16)	intron (NM_173075, intron 9 of 16)	-51608	NM_001166054	323		NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
219837	chr8	81796451	81797300	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	45310	NR_145473	64089		NM_022133	ENSG00000104497	SNX16	-	sorting nexin 16	protein-coding
178176	chr4	142378801	142379000	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	24233	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
152010	chr22	19406451	19406550	+	0	NA	intron (NM_003325, intron 4 of 24)	intron (NM_003325, intron 4 of 24)	25233	NM_003325	7290		NM_003325	ENSG00000100084	HIRA	DGCR1|TUP1|TUPLE1	histone cell cycle regulator	protein-coding
112090	chr19	5547921	5548180	+	0	NA	Intergenic	Intergenic	19984	NR_027064								
84294	chr16	30084071	30084480	+	0	NA	intron (NM_001303504, intron 6 of 7)	(CA)n|Simple_repeat|Simple_repeat	7649	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
202591	chr6	158702771	158703550	+	0	NA	intron (NM_001318745, intron 3 of 14)	AluSc8|SINE|Alu	39757	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
233392	chr9	137548671	137549180	+	0	NA	intron (NM_001098537, intron 1 of 34)	intron (NM_001098537, intron 1 of 34)	1477	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
228592	chr9	104970121	104970450	+	0	NA	Intergenic	AluSc|SINE|Alu	-42130	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
188311	chr5	151198801	151199000	+	0	NA	intron (NM_015621, intron 4 of 8)	intron (NM_015621, intron 4 of 8)	-13234	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
5148	chr1	24906901	24907100	+	0	NA	intron (NM_001031680, intron 5 of 5)	intron (NM_001031680, intron 5 of 5)	12416	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
42723	chr11	72688401	72688730	+	0	NA	intron (NR_161388, intron 25 of 29)	intron (NR_161388, intron 25 of 29)	-11909	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
43147	chr11	75317301	75317500	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	17786	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
44262	chr11	102109951	102111050	+	0	NA	promoter-TSS (NM_001282101)	promoter-TSS (NM_001282101)	39	NM_001282100	10413		NM_006106	ENSG00000137693	YAP1	COB1|YAP|YAP-1|YAP2|YAP65|YKI	Yes1 associated transcriptional regulator	protein-coding
17480	chr1	156716901	156717430	+	0	NA	Intergenic	L2|LINE|L2	11274	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
190997	chr6	3059201	3059400	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-4667	NM_001317061	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
174908	chr4	49099521	49100300	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	113268	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
83418	chr16	27228151	27229430	+	0	NA	intron (NM_145080, intron 5 of 7)	intron (NM_145080, intron 5 of 7)	24815	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
29183	chr10	68955301	68956600	+	0	NA	promoter-TSS (NM_001256910)	promoter-TSS (NM_001256910)	-220	NM_004728	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
184634	chr5	107395321	107395780	+	0	NA	intron (NM_001962, intron 2 of 4)	intron (NM_001962, intron 2 of 4)	275387	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
168543	chr3	146468901	146470100	+	0	NA	promoter-TSS (NM_001199978)	promoter-TSS (NM_001199978)	-199	NM_001199978	57047		NM_020359	ENSG00000163746	PLSCR2	-	phospholipid scramblase 2	protein-coding
142011	chr20	1627321	1627580	+	0	NA	Intergenic	L1MCa|LINE|L1	-6058	NR_110090	101929010		NR_110090	ENSG00000237914	SIRPG-AS1	-	SIRPG antisense RNA 1	ncRNA
12476	chr1	107900101	107900680	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	3167	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
192641	chr6	26158701	26160400	+	0	NA	TTS (NM_021063)	TTS (NM_021063)	1428	NM_021063	3017		NM_021063	ENSG00000158373	H2BC5	H2B.1B|H2B/a|H2B/b|H2B/g|H2B/h|H2B/k|H2B/l|H2BFA|H2BFB|H2BFG|H2BFH|H2BFK|H2BFL|HIRIP2|HIST1H2BC|HIST1H2BD|HIST1H2BE|HIST1H2BF|HIST1H2BG|HIST1H2BI|dJ221C16.6	H2B clustered histone 5	protein-coding
2678	chr1	10530451	10530550	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	55550	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
181381	chr5	40656821	40657280	+	0	NA	Intergenic	L1PB3|LINE|L1	-22865	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
152169	chr22	20082501	20083280	+	0	NA	intron (NM_022720, intron 1 of 13)	intron (NM_022720, intron 1 of 13)	2649	NM_022720	54487		NM_022720	ENSG00000128191	DGCR8	C22orf12|DGCRK6|Gy1|pasha	DGCR8 microprocessor complex subunit	protein-coding
188817	chr5	158875051	158875700	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	222581	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
15864	chr1	151446371	151446950	+	0	NA	intron (NM_015100, intron 1 of 18)	AluSx|SINE|Alu	-4455	NM_207171	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
36321	chr11	3865551	3866780	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	10103	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
172375	chr4	1756721	1757530	+	0	NA	Intergenic	Intergenic	35604	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
60417	chr13	40977971	40978430	+	0	NA	intron (NM_001370329, intron 2 of 9)	AluSc|SINE|Alu	4082	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
219004	chr8	63179851	63180930	+	0	NA	intron (NR_102434, intron 3 of 3)	SVA_D|Retroposon|SVA	11387	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
229051	chr9	114338021	114338350	+	0	NA	intron (NM_001317952, intron 20 of 20)	intron (NM_001317952, intron 20 of 20)	8316	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
96222	chr17	39779451	39779550	+	0	NA	intron (NM_001284514, intron 6 of 8)	intron (NM_001284514, intron 6 of 8)	-1275	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
6099	chr1	27319651	27320350	+	0	NA	Intergenic	L2b|LINE|L2	-2145	NM_032125	84065		NM_032125	ENSG00000186501	TMEM222	C1orf160|NEDMOSBA	transmembrane protein 222	protein-coding
172840	chr4	3220001	3220200	+	0	NA	intron (NM_002111, intron 52 of 66)	intron (NM_002111, intron 52 of 66)	-24269	NM_001330620	345222		NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding
130293	chr2	84904071	84904230	+	0	NA	Intergenic	MIRc|SINE|MIR	-1506	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
69930	chr14	99575751	99575850	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	28407	NM_001144995	317762		NM_022747	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding
219331	chr8	70215321	70215650	+	0	NA	intron (NM_001321713, intron 3 of 21)	intron (NM_001321713, intron 3 of 21)	-144233	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
139660	chr2	226837851	226837950	+	0	NA	intron (NM_001349071, intron 1 of 6)	intron (NM_001349071, intron 1 of 6)	1846	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
120457	chr19	44654151	44654750	+	0	NA	promoter-TSS (NR_039756)	promoter-TSS (NR_039756)	-718	NR_039756	100616355		NR_039756	ENSG00000283673	MIR4531	-	microRNA 4531	ncRNA
207791	chr7	50256871	50257030	+	0	NA	Intergenic	MER117|DNA|hAT-Charlie	-47114	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
30023	chr10	73791101	73791500	+	0	NA	intron (NM_015037, intron 8 of 25)	intron (NM_015037, intron 8 of 25)	5676	NM_015037	23053		NM_015037	ENSG00000214655	ZSWIM8	KIAA0913	zinc finger SWIM-type containing 8	protein-coding
126228	chr2	27034671	27034830	+	0	NA	intron (NM_017727, intron 2 of 16)	AluSx1|SINE|Alu	1785	NM_001083590	54867		NM_017727	ENSG00000119777	TMEM214	-	transmembrane protein 214	protein-coding
239166	chrY	12213871	12214430	+	0	NA	Intergenic	Intergenic	207440	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
170073	chr3	182924771	182924930	+	0	NA	Intergenic	AluJr|SINE|Alu	55688	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
106865	chr18	24116271	24116430	+	0	NA	intron (NM_001135993, intron 7 of 13)	AluSx1|SINE|Alu	3023	NM_001292030	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
82330	chr16	15793951	15794050	+	0	NA	intron (NM_022844, intron 4 of 41).2	AluYm1|SINE|Alu	63028	NM_001040113	4629		NM_002474	ENSG00000133392	MYH11	AAT4|FAA4|SMHC|SMMHC|SMMS-1|VSCM2	myosin heavy chain 11	protein-coding
83850	chr16	28875901	28876580	+	0	NA	Intergenic	Intergenic	-2248	NM_004320	487		NM_004320	ENSG00000196296	ATP2A1	ATP2A|SERCA1	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1	protein-coding
43349	chr11	76671771	76671950	+	0	NA	Intergenic	MIR3|SINE|MIR	-1113	NM_001128922	2615		NM_005512	ENSG00000137507	LRRC32	CPPRDD|D11S833E|GARP	leucine rich repeat containing 32	protein-coding
210480	chr7	100159571	100159730	+	0	NA	promoter-TSS (NM_018275)	promoter-TSS (NM_018275)	-927	NM_018275	55262		NM_018275	ENSG00000146826	TRAPPC14	C7orf43|MAP11|MCPH25	trafficking protein particle complex subunit 14	protein-coding
221649	chr8	125939171	125939530	+	0	NA	intron (NR_038447, intron 2 of 3)	intron (NR_038447, intron 2 of 3)	11847	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
207460	chr7	44608301	44608650	+	0	NA	intron (NM_001363523, intron 1 of 23)	AluSx|SINE|Alu	1848	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
181887	chr5	54524801	54525000	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	7141	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
93688	chr17	19366671	19367030	+	0	NA	intron (NM_001368769, intron 1 of 6)	intron (NM_001368769, intron 1 of 6)	-4112	NM_001243473	27077		NM_015681	ENSG00000108641	B9D1	B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1	B9 domain containing 1	protein-coding
209587	chr7	77534921	77535180	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2245	NM_002835	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
151706	chr22	17369521	17370630	+	0	NA	intron (NM_001290047, intron 1 of 18)	CpG	615	NM_001290047	27443		NM_031413	ENSG00000099954	CECR2	-	CECR2 histone acetyl-lysine reader	protein-coding
55523	chr12	105278071	105278230	+	0	NA	Intergenic	MER90a|LTR|ERV1	-41920	NM_001251904	55198		NM_018171	ENSG00000136044	APPL2	DIP13B	adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2	protein-coding
139589	chr2	224976571	224977130	+	0	NA	intron (NM_014689, intron 1 of 55)	MER58C|DNA|hAT-Charlie	5577	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
169916	chr3	177777721	177778180	+	0	NA	Intergenic	Intergenic	-38915	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
231372	chr9	130680971	130682100	+	0	NA	exon (NM_021619, exon 5 of 5)	exon (NM_021619, exon 5 of 5)	-12225	NM_001282709	23404		NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|SHRF|hRrp4p|p7	exosome component 2	protein-coding
58506	chr12	132174271	132174830	+	0	NA	Intergenic	Intergenic	15145	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
19120	chr1	171505771	171506450	+	0	NA	intron (NM_015172, intron 1 of 33)	AluSz|SINE|Alu	20580	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
26226	chr10	14585671	14586150	+	0	NA	intron (NM_001282695, intron 2 of 5)	MER94|DNA|hAT-Blackjack	-13535	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
187237	chr5	141349901	141350300	+	0	NA	promoter-TSS (NM_032095)	promoter-TSS (NM_032095)	-161	NM_018922	56104		NM_018922	ENSG00000254221	PCDHGB1	PCDH-GAMMA-B1	protocadherin gamma subfamily B, 1	protein-coding
32318	chr10	102172301	102172500	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	20011	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
98249	chr17	46172971	46173700	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	19447	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
4207	chr1	19453951	19454050	+	0	NA	intron (NM_001206541, intron 1 of 8)	MIR|SINE|MIR	30295	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
6409	chr1	27992121	27992630	+	0	NA	intron (NR_104214, intron 15 of 16)	MER1B|DNA|hAT-Charlie	32402	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
162478	chr3	48554751	48555350	+	0	NA	intron (NM_001317136, intron 1 of 13)	AluSq|SINE|Alu	1753	NM_001317135	5210		NM_004567	ENSG00000114268	PFKFB4	-	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding
157067	chr22	42596371	42596800	+	0	NA	intron (NM_001278657, intron 4 of 8)	intron (NM_001278657, intron 4 of 8)	-14574	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
193122	chr6	28980751	28983050	+	0	NA	Intergenic	Intergenic	-2849	NR_135289	414761		NR_135289		HCG15	HCG16	HLA complex group 15	ncRNA
27423	chr10	31578421	31578680	+	0	NA	Intergenic	Intergenic	-178795	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
136564	chr2	177618021	177619330	+	0	NA	promoter-TSS (NM_152275)	promoter-TSS (NM_152275)	67	NM_152275	92104		NM_152275	ENSG00000197557	IFT70A	CFAP259|FAP259|TTC30A|TTC30B	intraflagellar transport 70A	protein-coding
27375	chr10	30821451	30821550	+	0	NA	Intergenic	Intergenic	98281	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
106601	chr18	22260221	22261080	+	0	NA	Intergenic	U13|snRNA|snRNA	91061	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
3025	chr1	12121121	12121850	+	0	NA	intron (NM_001281430, intron 7 of 13)	intron (NM_001281430, intron 7 of 13)	-45458	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
78146	chr15	90402271	90403000	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	14393	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
34892	chr11	378601	378800	+	0	NA	intron (NM_178537, intron 14 of 19)	intron (NM_178537, intron 14 of 19)	9201	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
75518	chr15	66495301	66496300	+	0	NA	intron (NR_138061, intron 1 of 3)	intron (NR_138061, intron 1 of 3)	1234	NR_039737	100616149		NR_039737	ENSG00000266589	MIR4512	-	microRNA 4512	ncRNA
135311	chr2	160325151	160325450	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	-53405	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
34923	chr11	420351	420450	+	0	NA	intron (NM_001347882, intron 18 of 21)	CpG	-3003	NM_001135053	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
92647	chr17	10295771	10295950	+	0	NA	Intergenic	MIR3|SINE|MIR	77146	NM_003802	8735		NM_003802	ENSG00000006788	MYH13	MyHC-IIL|MyHC-eo	myosin heavy chain 13	protein-coding
75382	chr15	65733871	65734230	+	0	NA	intron (NM_001376919, intron 7 of 31)	LTR5_Hs|LTR|ERVK	-14718	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
143936	chr20	32761971	32763600	+	0	NA	intron (NM_175849, intron 1 of 19)	CpG	400	NM_006892	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
80268	chr16	2230251	2230350	+	0	NA	intron (NM_004424, intron 3 of 13)	intron (NM_004424, intron 3 of 13)	-6144	NM_001374	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
119207	chr19	39447001	39447650	+	0	NA	intron (NM_001111020, intron 2 of 29)	L2a|LINE|L2	1677	NM_003169	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
223668	chr8	144393501	144394000	+	0	NA	TTS (NR_030635)	TTS (NR_030635)	480	NR_030635	100126351		NR_030635	ENSG00000284310	MIR939	MIRN939|hsa-mir-939|mir-939	microRNA 939	ncRNA
208038	chr7	55949521	55949880	+	0	NA	Intergenic	AluSx|SINE|Alu	-2177	NM_015969	51373		NM_015969	ENSG00000239789	MRPS17	HSPC011|MRP-S17|RPMS17|S17mt|uS17m	mitochondrial ribosomal protein S17	protein-coding
150504	chr21	42834551	42835180	+	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	44410	NM_001260477	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
195882	chr6	41656121	41656380	+	0	NA	Intergenic	Intergenic	17782	NM_005586	4188		NM_005586	ENSG00000112559	MDFI	I-MF|I-mfa	MyoD family inhibitor	protein-coding
106951	chr18	31101451	31101950	+	0	NA	non-coding (NR_110785, exon 1 of 4)	non-coding (NR_110785, exon 1 of 4)	112	NR_110785	101927698		NR_110785		DSCAS	-	DSC1/DSC2 antisense RNA	ncRNA
167826	chr3	133597201	133597400	+	0	NA	Intergenic	LTR32|LTR|ERVL	22866	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
31186	chr10	91197251	91197680	+	0	NA	intron (NM_001257101, intron 1 of 9)	MIRb|SINE|MIR	-22686	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
228747	chr9	110049551	110050200	+	0	NA	intron (NM_001198656, intron 1 of 4)	intron (NM_001198656, intron 1 of 4)	1277	NM_001198656	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
32582	chr10	103470701	103472300	+	0	NA	Intergenic	Intergenic	7740	NM_001129742	119395		NM_182494	ENSG00000183128	CALHM3	FAM26A|bA225H22.7	calcium homeostasis modulator 3	protein-coding
8463	chr1	40712801	40713380	+	0	NA	intron (NM_001142590, intron 3 of 14)	intron (NM_001142590, intron 3 of 14)	3724	NM_001308115	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
122758	chr19	50125551	50125980	+	0	NA	Intergenic	L1P4|LINE|L1	-2571	NR_024228	100169958		NR_024228		SNAR-A8	-	small NF90 (ILF3) associated RNA A8	snRNA
115664	chr19	16139601	16140230	+	0	NA	intron (NR_163150, intron 1 of 7)	intron (NR_163150, intron 1 of 7)	-3770	NM_001369809	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
96714	chr17	41599001	41599200	+	0	NA	Intergenic	(TGGTGG)n|Simple_repeat|Simple_repeat	-12205	NM_000526	3861		NM_000526	ENSG00000186847	KRT14	CK14|EBS1|EBS1A|EBS1B|EBS1C|EBS1D|EBS3|EBS4|K14|NFJ	keratin 14	protein-coding
138272	chr2	203569651	203569950	+	0	NA	Intergenic	Intergenic	-34499	NM_213589	65059		NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
234894	chrX	30831121	30831480	+	0	NA	3' UTR (NM_152787, exon 11 of 11)	3' UTR (NM_152787, exon 11 of 11)	-3323	NR_145449	727682		NR_145449		TAB3-AS1	CXorf29	TAB3 antisense RNA 1	ncRNA
148861	chr21	8425851	8426280	+	0	NA	Intergenic	Intergenic	-6465	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
66048	chr14	58328771	58328930	+	0	NA	intron (NM_023000, intron 9 of 23)	AluSc|SINE|Alu	30295	NM_002892	5926		NM_002892	ENSG00000032219	ARID4A	RBBP-1|RBBP1|RBP-1|RBP1	AT-rich interaction domain 4A	protein-coding
121624	chr19	47435171	47435730	+	0	NA	intron (NM_015063, intron 8 of 9)	intron (NM_015063, intron 8 of 9)	-13217	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
96675	chr17	40935571	40935750	+	0	NA	intron (NM_001282433, intron 1 of 7)	intron (NM_001282433, intron 1 of 7)	1610	NM_001282433	25984		NM_015515	ENSG00000108244	KRT23	CK23|HAIK1|K23	keratin 23	protein-coding
212672	chr7	129609901	129610100	+	0	NA	Intergenic	L2b|LINE|L2	-1720	NM_001293163	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
155138	chr22	37654901	37655100	+	0	NA	intron (NM_001350055, intron 17 of 17)	L2a|LINE|L2	3377	NR_109952	101927051		NR_109952	ENSG00000233360	PDXP-DT	-	PDXP divergent transcript	ncRNA
235000	chrX	39820471	39820630	+	0	NA	Intergenic	Intergenic	-17011	NR_039763	100616251		NR_039763	ENSG00000263972	MIR1587	-	microRNA 1587	ncRNA
178092	chr4	140249471	140249630	+	0	NA	Intergenic	Intergenic	-7758	NM_032547	60592		NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding
180704	chr5	21712321	21712580	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-172004	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
94256	chr17	28689921	28690180	+	0	NA	intron (NM_003170, intron 25 of 36)	intron (NM_003170, intron 25 of 36)	20054	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
139948	chr2	230848971	230849400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-15000	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
125961	chr2	25228651	25229380	+	0	NA	non-coding (NR_135490, exon 24 of 24)	non-coding (NR_135490, exon 24 of 24)	23116	NM_001320893	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
67492	chr14	70925471	70925630	+	0	NA	intron (NM_014982, intron 1 of 35)	intron (NM_014982, intron 1 of 35)	18091	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
13984	chr1	120608271	120609230	+	0	NA	intron (NR_144516, intron 5 of 43)	intron (NR_144516, intron 5 of 43)	50065	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
223696	chr8	144427901	144429930	+	0	NA	promoter-TSS (NM_183057)	promoter-TSS (NM_183057)	-352	NM_183057	51160		NM_016208	ENSG00000160948	VPS28	CIIA	VPS28 subunit of ESCRT-I	protein-coding
193297	chr6	30077201	30077980	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1739	NM_025236	80352		NM_025236	ENSG00000204618	RNF39	FAP216|HZF|HZFW|LIRF	ring finger protein 39	protein-coding
111921	chr19	4721971	4722130	+	0	NA	intron (NM_001384635, intron 1 of 9)	MIRb|SINE|MIR	723	NM_001384628	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
123190	chr19	52535221	52536670	+	0	NA	intron (NM_001039886, intron 2 of 4)	CpG	8236	NM_001321424	388558		NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
16463	chr1	154604971	154606030	+	0	NA	intron (NM_001365046, intron 1 of 15)	intron (NM_001365046, intron 1 of 15)	753	NM_001193495	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
52612	chr12	56239171	56239330	+	0	NA	3' UTR (NM_173595, exon 28 of 28)	3' UTR (NM_173595, exon 28 of 28)	8533	NM_001135195	283375		NM_173596	ENSG00000139540	SLC39A5	LZT-Hs7|MYP24|ZIP5	solute carrier family 39 member 5	protein-coding
158860	chr3	9839301	9839500	+	0	NA	intron (NM_001142547, intron 6 of 7)	intron (NM_001142547, intron 6 of 7)	4608	NM_001351736	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
100394	chr17	60170601	60170800	+	0	NA	non-coding (NR_137422, exon 9 of 12)	non-coding (NR_137422, exon 9 of 12)	20727	NM_000717	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
131973	chr2	100142321	100142650	+	0	NA	5' UTR (NM_002285, exon 1 of 24)	5' UTR (NM_002285, exon 1 of 24)	105	NM_002285	3899		NM_002285	ENSG00000144218	AFF3	KINS|LAF4|MLLT2-like	ALF transcription elongation factor 3	protein-coding
208974	chr7	74200921	74201950	+	0	NA	Intergenic	AluSq|SINE|Alu	-8571	NM_032464	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
17266	chr1	156389401	156389700	+	0	NA	Intergenic	Intergenic	20339	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
74159	chr15	55281851	55283430	+	0	NA	intron (NM_183235, intron 1 of 6)	intron (NM_183235, intron 1 of 6)	7173	NM_183235	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
178149	chr4	142318901	142319100	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	-13056	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
209806	chr7	87879521	87879830	+	0	NA	intron (NM_001318060, intron 2 of 10)	intron (NM_001318060, intron 2 of 10)	3182	NM_006716	10926		NM_006716	ENSG00000006634	DBF4	ASK|CHIF|DBF4A|ZDBF1	DBF4-CDC7 kinase regulatory subunit	protein-coding
180603	chr5	16454821	16455080	+	0	NA	intron (NM_033414, intron 4 of 5)	MER5A|DNA|hAT-Charlie	10850	NM_033414	90441		NM_033414	ENSG00000173545	ZNF622	ZPR9	zinc finger protein 622	protein-coding
170379	chr3	184727501	184727730	+	0	NA	intron (NR_160768, intron 2 of 4)	intron (NR_160768, intron 2 of 4)	15372	NR_160768	107986163		NR_160768	ENSG00000272970	LOC107986163	-	uncharacterized LOC107986163	ncRNA
235281	chrX	41919051	41919450	+	0	NA	intron (NM_001126055, intron 1 of 24)	L2c|LINE|L2	3784	NM_003688	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
150165	chr21	39004671	39005230	+	0	NA	Intergenic	Intergenic	-27176	NR_109962	101928435		NR_109962	ENSG00000232837	LINC01700	-	long intergenic non-protein coding RNA 1700	ncRNA
53281	chr12	64256071	64256750	+	0	NA	Intergenic	Intergenic	-34114	NM_001300940	144577		NM_152440	ENSG00000174206	KICS2	C12orf66	KICSTOR subunit 2	protein-coding
106739	chr18	23530701	23530900	+	0	NA	TTS (NM_000271)	TTS (NM_000271)	27289	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
236737	chrX	78138951	78140280	+	0	NA	promoter-TSS (NM_015975)	promoter-TSS (NM_015975)	35	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
37934	chr11	34248221	34249600	+	0	NA	intron (NM_145804, intron 1 of 16)	AluSp|SINE|Alu	109100	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
79765	chr16	1363001	1363950	+	0	NA	non-coding (NR_160279, exon 7 of 7)	non-coding (NR_160279, exon 7 of 7)	11544	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
65331	chr14	50123271	50123430	+	0	NA	intron (NM_006939, intron 21 of 22)	L2a|LINE|L2	-6778	NR_049739	79609		NM_024558	ENSG00000100483	VCPKMT	C14orf138|METTL21D|VCP-KMT	valosin containing protein lysine methyltransferase	protein-coding
61339	chr13	50713521	50714330	+	0	NA	intron (NM_198989, intron 1 of 1)	intron (NM_198989, intron 1 of 1)	-93930	NR_046551	100874074		NR_046551	ENSG00000176124	DLEU7-AS1	-	DLEU7 antisense RNA 1	ncRNA
121723	chr19	47699221	47700230	+	0	NA	intron (NM_015711, intron 14 of 14)	MER96|DNA|hAT-Tip100	-13697	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
194645	chr6	33592471	33593650	+	0	NA	non-coding (NR_027908, exon 1 of 2)	non-coding (NR_027908, exon 1 of 2)	278	NR_027908	401253		NM_207497	ENSG00000197251	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
239198	chrY	12912401	12913450	+	0	NA	non-coding (NR_136723, exon 5 of 14)	non-coding (NR_136723, exon 5 of 14)	7220	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
144015	chr20	33438371	33438800	+	0	NA	intron (NM_003098, intron 2 of 7)	MIRb|SINE|MIR	5178	NM_003098	6640		NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	syntrophin alpha 1	protein-coding
223940	chr9	841801	842000	+	0	NA	exon (NM_021951, exon 1 of 5)	exon (NM_021951, exon 1 of 5)	203	NM_021951	1761		NM_021951	ENSG00000137090	DMRT1	CT154|DMT1	doublesex and mab-3 related transcription factor 1	protein-coding
115763	chr19	16332801	16333660	+	0	NA	Intergenic	L1M4|LINE|L1	8404	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
181506	chr5	43019501	43020700	+	0	NA	promoter-TSS (NR_104650)	promoter-TSS (NR_104650)	-457	NR_104650	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
148955	chr21	10649551	10649660	+	0	NA	Intergenic	Intergenic	128022	NM_199259	7179		NM_199259	ENSG00000274391	TPTE	CT44|PTEN2|TPTE1	transmembrane phosphatase with tensin homology	protein-coding
24434	chr1	243595251	243596000	+	0	NA	intron (NM_005465, intron 8 of 13)	Tigger3b|DNA|TcMar-Tigger	247657	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
160777	chr3	32901951	32902550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49394	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
145413	chr20	41697751	41698430	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-79713	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
142884	chr20	17895151	17895830	+	0	NA	Intergenic	Intergenic	67456	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
42206	chr11	68014971	68015130	+	0	NA	intron (NM_001030010, intron 1 of 8)	intron (NM_001030010, intron 1 of 8)	4723	NM_001290058	221		NM_000694	ENSG00000006534	ALDH3B1	ALDH4|ALDH7	aldehyde dehydrogenase 3 family member B1	protein-coding
180953	chr5	35617321	35618550	+	0	NA	promoter-TSS (NM_024867)	promoter-TSS (NM_024867)	72	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
191026	chr6	3151821	3152080	+	0	NA	intron (NM_004332, intron 6 of 6)	intron (NM_004332, intron 6 of 6)	5594	NM_001310315	7280		NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
204595	chr7	5302601	5303600	+	0	NA	3' UTR (NM_001300847, exon 11 of 11)	3' UTR (NM_001300847, exon 11 of 11)	20157	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
129732	chr2	70919751	70920400	+	0	NA	intron (NM_012476, intron 1 of 2)	Charlie20a|DNA|hAT-Charlie	-15825	NM_001692	525		NM_001692	ENSG00000116039	ATP6V1B1	ATP6B1|DRTA2|RTA1B|VATB|VMA2|VPP3	ATPase H+ transporting V1 subunit B1	protein-coding
24252	chr1	236303671	236303830	+	0	NA	Intergenic	Intergenic	-21792	NM_019891	56605		NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding
79790	chr16	1387601	1388230	+	0	NA	intron (NM_001372107, intron 9 of 14)	intron (NM_001372107, intron 9 of 14)	-8263	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
2089	chr1	7955771	7956780	+	0	NA	Intergenic	HAL1|LINE|L1	-5379	NM_001123377	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
29830	chr10	72325851	72325950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	29019	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
125855	chr2	24493701	24494730	+	0	NA	intron (NM_001362954, intron 1 of 23)	intron (NM_001362954, intron 1 of 23)	2338	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
73470	chr15	43510171	43512130	+	0	NA	promoter-TSS (NM_005657)	promoter-TSS (NM_005657)	-510	NM_005657	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
7073	chr1	32018401	32018800	+	0	NA	intron (NR_073498, intron 1 of 8)	AluY|SINE|Alu	4732	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
28787	chr10	62071751	62072250	+	0	NA	intron (NM_001244638, intron 5 of 6)	LTR50|LTR|ERVL	22643	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
149394	chr21	31151671	31151830	+	0	NA	intron (NM_001353694, intron 19 of 27)	L1ME1|LINE|L1	9190	NM_001353684	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
196854	chr6	47631351	47631880	+	0	NA	Intergenic	Intergenic	-24857	NM_153839	222611		NM_153839		ADGRF2	GPR111|PGR20|hGPCR35	adhesion G protein-coupled receptor F2	ncRNA
148605	chr21	5127051	5127350	+	0	NA	intron (NR_135220, intron 1 of 5)	intron (NR_135220, intron 1 of 5)	1169	NM_001363761	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
187010	chr5	139754301	139754500	+	0	NA	Intergenic	AluJb|SINE|Alu	-8177	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
136105	chr2	173924601	173925330	+	0	NA	intron (NM_001172712, intron 4 of 6)	AluSx|SINE|Alu	38915	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
141408	chr2	240916721	240917750	+	0	NA	intron (NM_001351305, intron 1 of 31)	intron (NM_001351305, intron 1 of 31)	10899	NM_001351305	728763		NM_001351305	ENSG00000226321	CROCC2	-	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding
174877	chr4	48741921	48743350	+	0	NA	intron (NM_015030, intron 1 of 63)	intron (NM_015030, intron 1 of 63)	37644	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
179449	chr4	184417801	184418650	+	0	NA	intron (NM_002199, intron 4 of 8)	intron (NM_002199, intron 4 of 8)	-35919	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
127123	chr2	37655701	37655900	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	15842	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
118979	chr19	38875371	38875530	+	0	NA	intron (NM_001195833, intron 3 of 11)	AluSq2|SINE|Alu	2825	NM_198445	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
12038	chr1	97926101	97926630	+	0	NA	Intergenic	L2b|LINE|L2	-5306	NM_001160301	1806		NM_000110	ENSG00000188641	DPYD	DHP|DHPDHASE|DPD|DYPD	dihydropyrimidine dehydrogenase	protein-coding
37047	chr11	12199371	12199530	+	0	NA	intron (NR_144415, intron 2 of 26)	intron (NR_144415, intron 2 of 26)	35767	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
210399	chr7	99978841	99978950	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1867	NR_036679	646282		NR_036679	ENSG00000291148	AZGP1P1	-	AZGP1 pseudogene 1	pseudo
197875	chr6	89093951	89094450	+	0	NA	Intergenic	AluSx1|SINE|Alu	13449	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
188305	chr5	151171921	151172280	+	0	NA	Intergenic	MIRb|SINE|MIR	-14321	NM_001363114	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
205580	chr7	21377771	21377930	+	0	NA	Intergenic	L1MEc|LINE|L1	-50233	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
197340	chr6	73436651	73436950	+	0	NA	intron (NM_138441, intron 3 of 4)	AluJb|SINE|Alu	15497	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
189694	chr5	176436501	176437550	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-11360	NM_014613	23197		NM_014613	ENSG00000113194	FAF2	ETEA|UBXD8|UBXN3B	Fas associated factor family member 2	protein-coding
115081	chr19	14216871	14218200	+	0	NA	Intergenic	Intergenic	-11366	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
67560	chr14	71327251	71327630	+	0	NA	intron (NM_001354287, intron 2 of 23)	intron (NM_001354287, intron 2 of 23)	6964	NM_015556	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
73271	chr15	41848271	41848430	+	0	NA	TTS (NM_001114633)	TTS (NM_001114633)	9537	NM_001114633	100137049		NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2 group IVB	protein-coding
169812	chr3	177098471	177098630	+	0	NA	intron (NM_001374330, intron 1 of 14)	intron (NM_001374330, intron 1 of 14)	97928	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
53480	chr12	66168071	66168480	+	0	NA	intron (NM_001282606, intron 1 of 7)	L1MB2|LINE|L1	1721	NM_016056	51643		NM_016056	ENSG00000155957	TMBIM4	CGI-119|GAAP|LFG4|S1R|ZPRO	transmembrane BAX inhibitor motif containing 4	protein-coding
160621	chr3	31521301	31521630	+	0	NA	Intergenic	Intergenic	-11460	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
140303	chr2	232444121	232444930	+	0	NA	Intergenic	Intergenic	-11628	NM_001631	248		NM_001631	ENSG00000163295	ALPI	IAP	alkaline phosphatase, intestinal	protein-coding
72567	chr15	34550211	34550900	+	0	NA	intron (NM_001023567, intron 4 of 23)	intron (NM_001023567, intron 4 of 23)	-22184	NR_036261	100422845		NR_036261	ENSG00000221065	MIR1233-2	-	microRNA 1233-2	ncRNA
216633	chr8	22105621	22106150	+	0	NA	TTS (NM_001354250)	TTS (NM_001354250)	3534	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
42866	chr11	73294321	73294580	+	0	NA	intron (NM_001277207, intron 2 of 2)	intron (NM_001277207, intron 2 of 2)	-13826	NM_014786	9828		NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor 17	protein-coding
40303	chr11	63871721	63872730	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	-16312	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
191844	chr6	15242971	15243130	+	0	NA	Intergenic	Intergenic	-3019	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
28464	chr10	49272301	49272500	+	0	NA	Intergenic	Intergenic	26493	NR_108038	100506769		NR_108038		C10orf71-AS1	-	C10orf71 antisense RNA 1	ncRNA
35367	chr11	1258471	1258880	+	0	NA	intron (NM_002458, intron 43 of 48)	intron (NM_002458, intron 43 of 48)	2070	NR_106802	102466725		NR_106802	ENSG00000275669	MIR6744	hsa-mir-6744	microRNA 6744	ncRNA
214897	chr7	151434771	151434930	+	0	NA	intron (NM_001308292, intron 2 of 2)	MER6B|DNA|TcMar-Tigger	-1211	NR_037468	100500835		NR_037468	ENSG00000265810	MIR3907	-	microRNA 3907	ncRNA
46001	chr11	121546971	121547530	+	0	NA	intron (NM_003105, intron 14 of 47)	MamTip1|DNA|hAT-Tip100	-65461	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
142005	chr20	1509271	1509580	+	0	NA	Intergenic	Intergenic	-18005	NM_001122962	284759		NM_001122962	ENSG00000196209	SIRPB2	PTPN1L|PTPNS1L3|dJ776F14.2	signal regulatory protein beta 2	protein-coding
205669	chr7	23002151	23002750	+	0	NA	intron (NM_001363466, intron 1 of 11)	intron (NM_001363466, intron 1 of 11)	11680	NM_032581	84668		NM_032581	ENSG00000122591	HYCC1	DRCTNNB1A|FAM126A|HCC|HLD5	hyccin PI4KA lipid kinase complex subunit 1	protein-coding
45732	chr11	119111351	119111850	+	0	NA	exon (NM_001290474, exon 7 of 14)	exon (NM_001290474, exon 7 of 14)	4256	NM_014807	9854		NM_014807	ENSG00000172375	C2CD2L	DLNB23|TMEM24	C2CD2 like	protein-coding
135667	chr2	168476851	168477150	+	0	NA	intron (NM_203463, intron 1 of 9)	MLT1A0|LTR|ERVL-MaLR	20728	NM_001256126	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
108795	chr18	77645171	77645730	+	0	NA	Intergenic	MIRc|SINE|MIR	348277	NR_104127	101927715		NR_104127	ENSG00000265843	LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
177647	chr4	121224251	121224550	+	0	NA	intron (NM_001244764, intron 1 of 12)	intron (NM_001244764, intron 1 of 12)	3083	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
67595	chr14	72443701	72444350	+	0	NA	intron (NM_001370288, intron 3 of 16)	intron (NM_001370288, intron 3 of 16)	-72795	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
214436	chr7	149873281	149875000	+	0	NA	promoter-TSS (NR_027040)	promoter-TSS (NR_027040)	171	NM_001367794	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
186590	chr5	138506471	138506630	+	0	NA	non-coding (NR_157090, exon 10 of 10)	non-coding (NR_157090, exon 10 of 10)	35161	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
143832	chr20	32506871	32507380	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	-2834	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
189793	chr5	176812051	176812150	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	1541	NM_133369	90249		NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
35678	chr11	1880021	1880400	+	0	NA	TTS (NR_107001)	TTS (NR_107001)	165	NR_107001	102465993		NR_107001	ENSG00000284594	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
115200	chr19	14471971	14472780	+	0	NA	TTS (NM_213560)	TTS (NM_213560)	2979	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
96174	chr17	39723551	39724150	+	0	NA	intron (NM_001382805, intron 18 of 19)	intron (NM_001382805, intron 18 of 19)	-2645	NR_039881	100616132		NR_039881	ENSG00000265178	MIR4728	-	microRNA 4728	ncRNA
167922	chr3	136175671	136175830	+	0	NA	intron (NM_018133, intron 1 of 1)	intron (NM_018133, intron 1 of 1)	18718	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
104268	chr17	80782651	80783850	+	0	NA	intron (NM_020761, intron 6 of 33)	intron (NM_020761, intron 6 of 33)	22382	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
172692	chr4	2759751	2760150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3614	NM_024309	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
152285	chr22	20303901	20304180	+	0	NA	Intergenic	Intergenic	16020	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
122570	chr19	49674201	49674400	+	0	NA	TTS (NM_001040668)	TTS (NM_001040668)	-2971	NM_198318	3276		NM_001536	ENSG00000126457	PRMT1	ANM1|HCP1|HRMT1L2|IR1B4	protein arginine methyltransferase 1	protein-coding
195986	chr6	41977601	41978000	+	0	NA	intron (NM_001136017, intron 1 of 4)	L3|LINE|CR1	-35952	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
218072	chr8	38923821	38924080	+	0	NA	intron (NM_021623, intron 2 of 11)	AluSx|SINE|Alu	22604	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
20447	chr1	198534071	198534530	+	0	NA	intron (NM_133262, intron 2 of 3)	MLT1C|LTR|ERVL-MaLR	6380	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
58352	chr12	131607451	131608180	+	0	NA	Intergenic	Plat_L3|LINE|CR1	40306	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
41298	chr11	65870301	65870600	+	0	NA	intron (NM_016938, intron 5 of 10)	intron (NM_016938, intron 5 of 10)	2350	NM_016938	30008		NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin extracellular matrix protein 2	protein-coding
59300	chr13	24268771	24268930	+	0	NA	intron (NM_153023, intron 3 of 11)	intron (NM_153023, intron 3 of 11)	-1837	NM_001286794	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
238498	chrX	153609871	153611230	+	0	NA	Intergenic	CpG	11210	NR_131982	105373383		NR_131982	ENSG00000293160	LOC105373383	-	uncharacterized LOC105373383	ncRNA
109303	chr19	568071	568300	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-3098	NM_198591	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
124825	chr2	7719821	7720380	+	0	NA	Intergenic	Intergenic	179555	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
231695	chr9	131714671	131714830	+	0	NA	intron (NM_001377935, intron 1 of 26)	AluJr|SINE|Alu	-4908	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
95597	chr17	37406321	37407880	+	0	NA	promoter-TSS (NM_198839)	promoter-TSS (NM_198839)	-124	NM_133439	6871		NM_001488	ENSG00000276234	TADA2A	ADA2|ADA2A|KL04P|TADA2L|hADA2	transcriptional adaptor 2A	protein-coding
216734	chr8	22449571	22450200	+	0	NA	intron (NM_005605, intron 1 of 13)	AluSx3|SINE|Alu	8807	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
17806	chr1	159823471	159823630	+	0	NA	Intergenic	Intergenic	-3323	NM_001330741	56833		NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
194173	chr6	32111471	32111900	+	0	NA	Intergenic	Intergenic	-2347	NM_001365276	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
3143	chr1	12480101	12480300	+	0	NA	intron (NM_018156, intron 66 of 68)	intron (NM_018156, intron 66 of 68)	-27046	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
161075	chr3	38088471	38088630	+	0	NA	intron (NM_001321153, intron 10 of 36)	intron (NM_001321153, intron 10 of 36)	48577	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
122243	chr19	49016821	49017080	+	0	NA	TTS (NM_006666)	TTS (NM_006666)	141	NM_000894	3972		NM_000894	ENSG00000104826	LHB	CGB4|HH23|LSH-B|LSH-beta	luteinizing hormone subunit beta	protein-coding
80101	chr16	2013451	2013750	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-3779	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
8866	chr1	43451151	43451550	+	0	NA	3' UTR (NM_015284, exon 71 of 71)	3' UTR (NM_015284, exon 71 of 71)	2581	NM_031207	81888		NM_031207	ENSG00000178922	HYI	HT036	hydroxypyruvate isomerase (putative)	protein-coding
150289	chr21	41928751	41929250	+	0	NA	intron (NM_015500, intron 2 of 13)	FLAM_C|SINE|Alu	-2297	NM_199050	25966		NM_015500	ENSG00000157617	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium dependent domain containing 2	protein-coding
146791	chr20	50926271	50926900	+	0	NA	intron (NM_001347511, intron 1 of 4)	intron (NM_001347511, intron 1 of 4)	-4399	NR_110007	101927631		NR_110007	ENSG00000259456	ADNP-AS1	-	ADNP antisense RNA 1	ncRNA
122327	chr19	49145651	49146980	+	0	NA	intron (NR_103842, intron 22 of 28)	intron (NR_103842, intron 22 of 28)	9081	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
22021	chr1	210251051	210251900	+	0	NA	Intergenic	Intergenic	14189	NM_001375428	56256		NM_019605	ENSG00000082497	SERTAD4	DJ667H12.2	SERTA domain containing 4	protein-coding
156461	chr22	41252271	41252830	+	0	NA	TTS (NR_106949)	TTS (NR_106949)	500	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
104296	chr17	80873551	80873850	+	0	NA	intron (NM_001163034, intron 13 of 29)	intron (NM_001163034, intron 13 of 29)	-68068	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
99394	chr17	49989701	49990180	+	0	NA	TTS (NM_005220)	TTS (NM_005220)	5284	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
126002	chr2	25310321	25310680	+	0	NA	intron (NR_135490, intron 2 of 23)	intron (NR_135490, intron 2 of 23)	18221	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
202638	chr6	158759101	158759630	+	0	NA	intron (NM_001318745, intron 11 of 14)	intron (NM_001318745, intron 11 of 14)	5388	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
238466	chrX	153105971	153106330	+	0	NA	Intergenic	L1MB5|LINE|L1	33696	NM_032882	84968		NM_032882	ENSG00000235961	PNMA6A	MA6|PNMA6|PNMA6C	PNMA family member 6A	protein-coding
167044	chr3	126656101	126656300	+	0	NA	Intergenic	Intergenic	-1076	NM_001173513	114112		NM_052883	ENSG00000197763	TXNRD3	TGR|TR2|TR2IT1|TRXR3|TXNR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1	thioredoxin reductase 3	protein-coding
51909	chr12	53671751	53672050	+	0	NA	intron (NR_163135, intron 2 of 4)	AluSq2|SINE|Alu	3519	NM_001330269	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
55901	chr12	109727451	109727750	+	0	NA	intron (NM_032829, intron 1 of 2)	MIRb|SINE|MIR	13775	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
124547	chr2	393601	394650	+	0	NA	Intergenic	Intergenic	77841	NR_146953	105373350		NR_146953		LINC01865	-	long intergenic non-protein coding RNA 1865	ncRNA
80808	chr16	3450551	3451050	+	0	NA	intron (NM_001317093, intron 2 of 6)	intron (NM_001317093, intron 2 of 6)	7120	NM_001083601	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
146460	chr20	49703651	49703950	+	0	NA	intron (NM_004776, intron 1 of 8)	AluSx|SINE|Alu	10078	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
4038	chr1	18949621	18951100	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	6316	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
159593	chr3	15101401	15102050	+	0	NA	Intergenic	Intergenic	-2568	NR_126155	64145		NM_022340	ENSG00000131381	RBSN	Rabenosyn-5|ZFYVE20	rabenosyn, RAB effector	protein-coding
130401	chr2	85323371	85323980	+	0	NA	intron (NM_001206840, intron 3 of 3)	intron (NM_001206840, intron 3 of 3)	4314	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
119513	chr19	40527821	40528280	+	0	NA	intron (NM_020971, intron 17 of 35)	AluSx1|SINE|Alu	-2441	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
38658	chr11	46380201	46382750	+	0	NA	promoter-TSS (NM_001270551)	promoter-TSS (NM_001270551)	-194	NR_073039	4192		NM_002391	ENSG00000110492	MDK	ARAP|MK|NEGF2	midkine	protein-coding
156790	chr22	41908021	41909130	+	0	NA	TTS (NM_001353439)	TTS (NM_001353439)	6499	NM_001353438	440829		NM_001207020	ENSG00000234965	SHISA8	C22orf17|Orf26	shisa family member 8	protein-coding
116710	chr19	18445401	18445600	+	0	NA	intron (NM_006532, intron 10 of 11)	intron (NM_006532, intron 10 of 11)	-7367	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
55372	chr12	104297551	104297850	+	0	NA	intron (NM_001261446, intron 2 of 13)	intron (NM_001261446, intron 2 of 13)	-6039	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
109009	chr18	79710321	79710980	+	0	NA	intron (NM_001318511, intron 6 of 11)	AluYf1|SINE|Alu	29220	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
101941	chr17	74493271	74493650	+	0	NA	Intergenic	Intergenic	26826	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
239007	chrX	156029801	156030700	+	0	NA	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	-2067	NR_110561	727856		NR_110561		DDX11L16	-	DEAD/H-box helicase 11 like 16 (pseudogene)	pseudo
68507	chr14	88492221	88492580	+	0	NA	intron (NM_007039, intron 10 of 18)	intron (NM_007039, intron 10 of 18)	62607	NM_007039	11099		NM_007039	ENSG00000070778	PTPN21	PTPD1|PTPRL10	protein tyrosine phosphatase non-receptor type 21	protein-coding
201191	chr6	143337601	143337830	+	0	NA	intron (NM_001366347, intron 7 of 7)	intron (NM_001366347, intron 7 of 7)	104962	NM_001286259	134637		NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase tRNA specific 2	protein-coding
39564	chr11	61129551	61130450	+	0	NA	TTS (NM_017966)	TTS (NM_017966)	27511	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
209652	chr7	77834051	77834750	+	0	NA	intron (NM_001366086, intron 1 of 17)	LTR23|LTR|ERV1	-5728	NM_020432	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
783	chr1	1535321	1535580	+	0	NA	TTS (NM_001170536)	TTS (NM_001170536)	5174	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
212395	chr7	128105421	128106150	+	0	NA	Intergenic	Intergenic	23924	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
34501	chr10	132553621	132553880	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	15963	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
226909	chr9	79568351	79568700	+	0	NA	Intergenic	Intergenic	-3248	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
15204	chr1	149285151	149286020	+	0	NA	Intergenic	Intergenic	-52698	NR_158171	100996716		NR_158171		SEC22B2P	CH17-189H20.1|SEC22B2	SEC22 homolog B2, pseudogene	pseudo
210093	chr7	97104701	97104980	+	0	NA	Intergenic	Intergenic	-12858	NM_020186	57001		NM_020186	ENSG00000196636	SDHAF3	ACN9|DC11|LYRM10|Sdh7	succinate dehydrogenase complex assembly factor 3	protein-coding
26018	chr10	12265251	12265350	+	0	NA	Intergenic	MER41A|LTR|ERV1	69112	NM_006023	8872		NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
139204	chr2	219257721	219257980	+	0	NA	intron (NM_001355221, intron 1 of 3)	(TA)n|Simple_repeat|Simple_repeat	-3242	NM_001278552	7277		NM_006000	ENSG00000127824	TUBA4A	ALS22|H2-ALPHA|TUBA1	tubulin alpha 4a	protein-coding
157106	chr22	42637771	42638130	+	0	NA	intron (NM_000398, intron 1 of 8)	intron (NM_000398, intron 1 of 8)	2651	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
219885	chr8	85648871	85649030	+	0	NA	Intergenic	AluJb|SINE|Alu	6726	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
235533	chrX	47229401	47229600	+	0	NA	3' UTR (NM_001170460, exon 16 of 16)	3' UTR (NM_001170460, exon 16 of 16)	-3509	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
209902	chr7	91953621	91953880	+	0	NA	intron (NM_147185, intron 1 of 49)	intron (NM_147185, intron 1 of 49)	12888	NM_005751	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
32485	chr10	102673021	102673280	+	0	NA	TTS (NM_004311)	TTS (NM_004311)	28655	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
88089	chr16	81513071	81513430	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	17896	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
226659	chr9	74960451	74960750	+	0	NA	intron (NR_121183, intron 1 of 4)	Tigger1|DNA|TcMar-Tigger	7635	NR_121183	101927380		NR_121183		CARNMT1-AS1	C9orf41-AS1	CARNMT1 antisense RNA 1	ncRNA
140009	chr2	230980351	230980850	+	0	NA	Intergenic	L1MC5a|LINE|L1	15432	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
116567	chr19	18236121	18236380	+	0	NA	intron (NM_000923, intron 1 of 15)	AluSz|SINE|Alu	-1871	NM_001330172	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
76310	chr15	74377001	74377200	+	0	NA	Intergenic	Intergenic	-1982	NR_146881	105370894		NR_146881		LINC02255	-	long intergenic non-protein coding RNA 2255	ncRNA
50416	chr12	47387901	47388500	+	0	NA	Intergenic	Intergenic	-23931	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
137452	chr2	196987801	196988380	+	0	NA	non-coding (NR_160034, exon 29 of 29)	non-coding (NR_160034, exon 29 of 29)	-61383	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
144334	chr20	34989471	34990100	+	0	NA	promoter-TSS (NR_030223)	promoter-TSS (NR_030223)	-591	NR_030223	574501		NR_030223	ENSG00000207635	MIR499A	MIR499|MIRN499|hsa-mir-499a|mir-499a	microRNA 499a	ncRNA
118690	chr19	38059951	38060250	+	0	NA	intron (NM_015073, intron 2 of 21)	L1ME3B|LINE|L1	-102996	NR_145800	109623473		NR_145800		SNORD152	-	small nucleolar RNA, C/D box 152	snoRNA
158610	chr3	4847201	4847400	+	0	NA	3' UTR (NM_001378452, exon 62 of 62)	3' UTR (NM_001378452, exon 62 of 62)	59201	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
7147	chr1	32215371	32216330	+	0	NA	TTS (NR_133634)	TTS (NR_133634)	-5734	NM_003757	8668		NM_003757	ENSG00000084623	EIF3I	EIF3S2|PRO2242|TRIP-1|TRIP1|eIF3-beta|eIF3-p36	eukaryotic translation initiation factor 3 subunit I	protein-coding
181835	chr5	52943271	52943680	+	0	NA	intron (NM_181501, intron 26 of 28)	L1PA16|LINE|L1	-45877	NR_073107	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
172918	chr4	3500501	3501280	+	0	NA	3' UTR (NM_001363811, exon 8 of 8)	3' UTR (NM_001363811, exon 8 of 8)	16346	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
218196	chr8	42004651	42004950	+	0	NA	intron (NM_001305878, intron 2 of 13)	AluSq2|SINE|Alu	-46950	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
17281	chr1	156427221	156427530	+	0	NA	intron (NR_135260, intron 1 of 3)	intron (NR_135260, intron 1 of 3)	2051	NR_168071	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
89891	chr16	89674101	89674580	+	0	NA	Intergenic	AluSc|SINE|Alu	-12349	NR_027703	8558		NM_003674	ENSG00000185324	CDK10	ALSAS|PISSLRE	cyclin dependent kinase 10	protein-coding
48232	chr12	8235121	8235850	+	0	NA	promoter-TSS (NR_120455)	promoter-TSS (NR_120455)	70	NR_120454	101927905		NR_120454	ENSG00000215241	LINC02449	-	long intergenic non-protein coding RNA 2449	ncRNA
89405	chr16	88825301	88825750	+	0	NA	intron (NM_000512, intron 10 of 13)	intron (NM_000512, intron 10 of 13)	-13597	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
151569	chr21	46598971	46599330	+	0	NA	3' UTR (NM_006272, exon 3 of 3)	3' UTR (NM_006272, exon 3 of 3)	5932	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
232290	chr9	134451251	134451750	+	0	NA	Intergenic	Intergenic	44940	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
141681	chr2	241803151	241804300	+	0	NA	exon (NM_022134, exon 4 of 4)	exon (NM_022134, exon 4 of 4)	-5468	NM_001167600	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
124792	chr2	7448521	7449380	+	0	NA	intron (NR_038432, intron 5 of 5)	intron (NR_038432, intron 5 of 5)	27689	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
209535	chr7	77158401	77158680	+	0	NA	intron (NM_020879, intron 1 of 18)	AluSq4|SINE|Alu	35925	NM_020879	57639		NM_020879	ENSG00000135205	CCDC146	MBO2	coiled-coil domain containing 146	protein-coding
8451	chr1	40694101	40695180	+	0	NA	intron (NM_001142590, intron 1 of 14)	intron (NM_001142590, intron 1 of 14)	-2379	NR_024567	100130557		NR_024567		NFYC-AS1	0808y08y	NFYC antisense RNA 1	ncRNA
4994	chr1	24329271	24329630	+	0	NA	intron (NM_021180, intron 1 of 15)	intron (NM_021180, intron 1 of 15)	6410	NM_021180	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
144001	chr20	33095971	33096200	+	0	NA	intron (NM_182519, intron 10 of 15)	intron (NM_182519, intron 10 of 15)	14573	NM_182519	149954		NM_182519	ENSG00000186191	BPIFB4	C20orf186|LPLUNC4|RY2G5|dJ726C3.5	BPI fold containing family B member 4	protein-coding
89198	chr16	88585621	88585880	+	0	NA	intron (NM_144604, intron 2 of 17)	L2b|LINE|L2	15347	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
154000	chr22	30402101	30402530	+	0	NA	intron (NM_033382, intron 2 of 10)	intron (NM_033382, intron 2 of 10)	5297	NM_001291932	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
234138	chrX	10014521	10016030	+	0	NA	promoter-TSS (NM_015691)	promoter-TSS (NM_015691)	21	NM_015691	55841		NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
23336	chr1	228107351	228108250	+	0	NA	exon (NM_181464, exon 4 of 5)	exon (NM_181464, exon 4 of 5)	1499	NM_181463	128308		NM_181441	ENSG00000162910	MRPL55	AAVG5835|L55nt|MRP-L55|PRO19675|bL31m	mitochondrial ribosomal protein L55	protein-coding
22856	chr1	225471221	225471480	+	0	NA	Intergenic	Intergenic	-42495	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
10225	chr1	62781071	62781230	+	0	NA	Intergenic	AluSz|SINE|Alu	-2956	NM_178221	84938		NM_032852	ENSG00000125703	ATG4C	APG4-C|APG4C|AUTL1|AUTL3|HsAPG4C	autophagy related 4C cysteine peptidase	protein-coding
151680	chr22	17117751	17118680	+	0	NA	3' UTR (NM_001163079, exon 2 of 2)	3' UTR (NM_001163079, exon 2 of 2)	3145	NM_031890	27439		NM_031890	ENSG00000183307	TMEM121B	CECR6	transmembrane protein 121B	protein-coding
44802	chr11	113772901	113774250	+	0	NA	exon (NM_004724, exon 1 of 16)	exon (NM_004724, exon 1 of 16)	117	NM_004724	9183		NM_004724	ENSG00000086827	ZW10	HZW10|KNTC1AP	zw10 kinetochore protein	protein-coding
198041	chr6	90180951	90181250	+	0	NA	intron (NM_021813, intron 4 of 8)	L1P5|LINE|L1	115743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
155894	chr22	39528821	39529800	+	0	NA	non-coding (NR_130151, exon 5 of 5)	non-coding (NR_130151, exon 5 of 5)	3438	NR_130151	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
203171	chr6	167103001	167103630	+	0	NA	Intergenic	Intergenic	-8492	NM_004367	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
112483	chr19	6418601	6419100	+	0	NA	exon (NM_001366299, exon 8 of 19)	exon (NM_001366299, exon 8 of 19)	-2339	NR_037505	100500888		NR_037505	ENSG00000284159	MIR3940	mir-3940	microRNA 3940	ncRNA
115814	chr19	16451071	16451580	+	0	NA	intron (NM_021235, intron 1 of 22)	intron (NM_021235, intron 1 of 22)	20645	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
48454	chr12	9741551	9742480	+	0	NA	Intergenic	Intergenic	-8716	NM_001253750	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
148611	chr21	5152571	5153450	+	0	NA	exon (NM_001368238, exon 2 of 21)	exon (NM_001368238, exon 2 of 21)	1648	NR_160695	102724159		NM_001368238	ENSG00000275464	LOC102724159	-	periodic tryptophan protein 2 homolog	protein-coding
75638	chr15	67196901	67197480	+	0	NA	Intergenic	L2c|LINE|L2	31035	NM_001145104	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
136111	chr2	173935971	173936300	+	0	NA	intron (NM_001172712, intron 4 of 6)	AluSx|SINE|Alu	27745	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
144280	chr20	34668571	34668930	+	0	NA	intron (NM_080476, intron 1 of 11)	AluYf1|SINE|Alu	8342	NM_080476	128869		NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1|GPIBD21|NEDBSS|PIG-U	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
108822	chr18	78980251	78980550	+	0	NA	intron (NM_171999, intron 1 of 2)	CpG-12694	125	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
122821	chr19	50399301	50399750	+	0	NA	intron (NR_046402, intron 3 of 25)	intron (NR_046402, intron 3 of 25)	673	NM_001308632	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
199757	chr6	125829421	125829900	+	0	NA	intron (NM_001199621, intron 2 of 14)	intron (NM_001199621, intron 2 of 14)	-10802	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
204407	chr7	3069701	3070400	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-26183	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
134409	chr2	142865971	142866530	+	0	NA	Intergenic	Intergenic	-11414	NM_001199241	8942		NM_003937	ENSG00000115919	KYNU	KYNUU|VCRL2	kynureninase	protein-coding
16969	chr1	155947901	155948100	+	0	NA	exon (NM_001350112, exon 22 of 22)	exon (NM_001350112, exon 22 of 22)	3336	NR_106796	102465442		NR_106796	ENSG00000277817	MIR6738	hsa-mir-6738	microRNA 6738	ncRNA
167450	chr3	129090151	129090250	+	0	NA	3' UTR (NM_001204883, exon 4 of 4)	3' UTR (NM_001204883, exon 4 of 4)	29421	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
83385	chr16	26599701	26599900	+	0	NA	Intergenic	LTR26D|LTR|ERV1	-467127	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
153548	chr22	26593951	26594830	+	0	NA	Intergenic	Intergenic	-4258	NM_001362922	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
63807	chr14	21438771	21438930	+	0	NA	intron (NM_001170629, intron 1 of 37)	AluSz6|SINE|Alu	-1575	NM_020920	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
66583	chr14	63493201	63493400	+	0	NA	intron (NM_006246, intron 2 of 13)	AluJo|SINE|Alu	14938	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
67829	chr14	73868201	73868500	+	0	NA	intron (NM_001371327, intron 3 of 8)	intron (NM_001371327, intron 3 of 8)	16403	NM_001146155	145482		NM_152444	ENSG00000140043	PTGR2	HEL-S-298|PGR2|ZADH1	prostaglandin reductase 2	protein-coding
3011	chr1	12068571	12069130	+	0	NA	intron (NM_001281430, intron 1 of 13)	L3|LINE|CR1	5473	NM_001281430	943		NM_001243	ENSG00000120949	TNFRSF8	CD30|D1S166E|Ki-1	TNF receptor superfamily member 8	protein-coding
175628	chr4	76199571	76200250	+	0	NA	intron (NM_001204255, intron 1 of 8)	intron (NM_001204255, intron 1 of 8)	13914	NM_001204255	950		NM_005506	ENSG00000138760	SCARB2	AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII	scavenger receptor class B member 2	protein-coding
187285	chr5	141565971	141566330	+	0	NA	TTS (NR_038333)	TTS (NR_038333)	7839	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
33231	chr10	114103101	114103550	+	0	NA	Intergenic	Intergenic	59459	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
57984	chr12	124092701	124092900	+	0	NA	intron (NM_001347902, intron 2 of 4)	(TGATGA)n|Simple_repeat|Simple_repeat	119585	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
46873	chr11	133952751	133953530	+	0	NA	intron (NM_001277285, intron 1 of 19)	intron (NM_001277285, intron 1 of 19)	3828	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
11175	chr1	87317901	87318450	+	0	NA	Intergenic	MamRep564|Unknown|Unknown	-10705	NM_006769	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
93332	chr17	18193671	18194180	+	0	NA	intron (NM_017758, intron 1 of 3)	intron (NM_017758, intron 1 of 3)	10097	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
92852	chr17	16288821	16289280	+	0	NA	intron (NM_004278, intron 2 of 6)	intron (NM_004278, intron 2 of 6)	7036	NR_031698	100302124		NR_031698	ENSG00000221355	MIR1288	MIRN1288|hsa-mir-1288	microRNA 1288	ncRNA
163095	chr3	50105821	50106550	+	0	NA	intron (NR_036627, intron 9 of 23)	AluYh3|SINE|Alu	-5197	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
70643	chr14	102917451	102918800	+	0	NA	Intergenic	Intergenic	-4538	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
179476	chr4	184503821	184504380	+	0	NA	Intergenic	Intergenic	-29550	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
118946	chr19	38831021	38832300	+	0	NA	intron (NM_001398, intron 1 of 9).2	CpG	134	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
53266	chr12	63672471	63672630	+	0	NA	Intergenic	AluJr4|SINE|Alu	-4057	NM_173812	283417		NM_173812	ENSG00000177990	DPY19L2	SPATA34|SPGF9	dpy-19 like 2	protein-coding
154281	chr22	31646501	31646780	+	0	NA	intron (NM_001326416, intron 3 of 10)	intron (NM_001326416, intron 3 of 10)	-8117	NM_178022	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
127770	chr2	44167551	44169200	+	0	NA	promoter-TSS (NM_177969)	promoter-TSS (NM_177969)	-428	NM_177969	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
174244	chr4	37954301	37954900	+	0	NA	intron (NM_015173, intron 2 of 19)	L2|LINE|L2	-5798	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
106615	chr18	22342471	22343100	+	0	NA	Intergenic	Intergenic	75130	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
86667	chr16	67479251	67479350	+	0	NA	intron (NM_004691, intron 1 of 7)	AluSg4|SINE|Alu	1857	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
32296	chr10	102136671	102137030	+	0	NA	intron (NM_015062, intron 1 of 13)	intron (NM_015062, intron 1 of 13)	3810	NM_015062	23082		NM_015062	ENSG00000148840	PPRC1	PRC	PPARG related coactivator 1	protein-coding
233675	chrX	1163221	1163480	+	0	NA	Intergenic	AluSz6|SINE|Alu	49299	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
135305	chr2	160294421	160294680	+	0	NA	intron (NM_016836, intron 6 of 13)	intron (NM_016836, intron 6 of 13)	-22655	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
183748	chr5	81334301	81334580	+	0	NA	intron (NM_130767, intron 12 of 14)	LTR1A1|LTR|ERV1	32853	NM_001131035	84240		NM_032280	ENSG00000131732	ZCCHC9	PPP1R41	zinc finger CCHC-type containing 9	protein-coding
139810	chr2	230336521	230336780	+	0	NA	intron (NM_138402, intron 2 of 18)	L1ME3G|LINE|L1	9457	NM_138402	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
34429	chr10	132413471	132413930	+	0	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	16500	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
23907	chr1	234987071	234987230	+	0	NA	Intergenic	Intergenic	-23151	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
94116	chr17	28047701	28048100	+	0	NA	intron (NM_016231, intron 1 of 10)	intron (NM_016231, intron 1 of 10)	5223	NM_016231	51701		NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding
74219	chr15	56245341	56245450	+	0	NA	promoter-TSS (NM_001370561)	promoter-TSS (NM_001370561)	-313	NM_001370561	64864		NM_022841	ENSG00000181827	RFX7	MRD71|RFXDC2	regulatory factor X7	protein-coding
190432	chr5	179837871	179838230	+	0	NA	TTS (NM_001142299)	TTS (NM_001142299)	17145	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
188667	chr5	157256621	157257250	+	0	NA	Intergenic	Intergenic	-9188	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
10672	chr1	71054071	71054880	+	0	NA	intron (NR_038420, intron 2 of 2)	intron (NR_038420, intron 2 of 2)	-6659	NM_001126044	5733		NM_000957	ENSG00000050628	PTGER3	EP3|EP3-I|EP3-II|EP3-III|EP3-IV|EP3-VI|EP3e|PGE2-R|lnc003875	prostaglandin E receptor 3	protein-coding
106488	chr18	14531751	14531850	+	0	NA	intron (NM_001137671, intron 5 of 10)	intron (NM_001137671, intron 5 of 10)	11800	NM_001137671	388468		NM_001137671	ENSG00000183206	POTEC	A26B2|CT104.6|POTE-18|POTE18	POTE ankyrin domain family member C	protein-coding
195578	chr6	37512701	37513780	+	0	NA	intron (NR_126057, intron 1 of 3)	intron (NR_126057, intron 1 of 3)	5892	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
27929	chr10	41913351	41914030	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	454355	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
218168	chr8	41958951	41959450	+	0	NA	intron (NM_001305878, intron 8 of 13)	intron (NM_001305878, intron 8 of 13)	-62459	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
73751	chr15	45401801	45403650	+	0	NA	promoter-TSS (NM_001321015)	promoter-TSS (NM_001321015)	389	NR_136648	79029		NM_024063	ENSG00000171763	AFG2B	DFNB119|NEDHLS|SPATA5L1	AFG2 AAA ATPase homolog B	protein-coding
62956	chr13	112282271	112282650	+	0	NA	Intergenic	Intergenic	-9460	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
31161	chr10	90897151	90897250	+	0	NA	intron (NM_006413, intron 10 of 10)	intron (NM_006413, intron 10 of 10)	23887	NM_014391	27063		NM_014391	ENSG00000148677	ANKRD1	ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2	ankyrin repeat domain 1	protein-coding
35169	chr11	772271	772730	+	0	NA	exon (NM_001318822, exon 3 of 5)	exon (NM_001318822, exon 3 of 5)	4987	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
164629	chr3	66407621	66408230	+	0	NA	intron (NM_001377344, intron 6 of 17)	intron (NM_001377344, intron 6 of 17)	-1767	NM_001377347	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
6650	chr1	28973021	28973280	+	0	NA	intron (NM_001376013, intron 1 of 20)	intron (NM_001376013, intron 1 of 20)	58574	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
8185	chr1	39566401	39566600	+	0	NA	TTS (NR_002983)	TTS (NR_002983)	1010	NR_002983	677834		NR_002983	ENSG00000201457	SNORA55	ACA55	small nucleolar RNA, H/ACA box 55	snoRNA
99024	chr17	48841051	48842150	+	0	NA	intron (NM_001261395, intron 1 of 11)	intron (NM_001261395, intron 1 of 11)	10565	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
45474	chr11	118576801	118577550	+	0	NA	intron (NM_001142281, intron 1 of 8)	AluJb|SINE|Alu	4766	NM_001655	372		NM_001655	ENSG00000095139	ARCN1	COPD|SRMMD|SSMG	archain 1	protein-coding
52532	chr12	56115771	56117150	+	0	NA	promoter-TSS (NM_001035267)	promoter-TSS (NM_001035267)	-173	NM_001035267	6171		NM_021104	ENSG00000229117	RPL41	L41|eL41	ribosomal protein L41	protein-coding
182106	chr5	56060671	56061180	+	0	NA	Intergenic	L2|LINE|L2	65758	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
22391	chr1	219173351	219174380	+	0	NA	promoter-TSS (NR_038845)	promoter-TSS (NR_038845)	-13	NM_138794	127018		NM_138794	ENSG00000143353	LYPLAL1	Q96AV0	lysophospholipase like 1	protein-coding
153989	chr22	30389951	30390250	+	0	NA	Intergenic	Intergenic	-2689	NM_001017981	200312		NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
223818	chr8	144849271	144850000	+	0	NA	TTS (NM_014066)	TTS (NM_014066)	3413	NM_001081004	28991		NM_014066	ENSG00000170619	COMMD5	HCARG|HT002	COMM domain containing 5	protein-coding
51136	chr12	50116351	50116850	+	0	NA	intron (NM_001257134, intron 1 of 1)	intron (NM_001257134, intron 1 of 1)	4364	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
181769	chr5	50738821	50739530	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	71761	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
214391	chr7	149781901	149782430	+	0	NA	intron (NR_163594, intron 12 of 102)	intron (NR_163594, intron 12 of 102)	6123	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
24112	chr1	235641871	235643380	+	0	NA	intron (NM_001098721, intron 1 of 3)	(GCAGG)n|Simple_repeat|Simple_repeat	7159	NM_001098722	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
215830	chr8	6706921	6707230	+	0	NA	intron (NR_125386, intron 1 of 4)	intron (NR_125386, intron 1 of 4)	1134	NR_125386	100507530		NR_125386		MCPH1-AS1	-	MCPH1 antisense RNA 1	ncRNA
236785	chrX	79100801	79101200	+	0	NA	Intergenic	MER66B|LTR|ERV1	-43688	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
137920	chr2	200964871	200965100	+	0	NA	Intergenic	Intergenic	-1325	NM_006190	4999		NM_006190	ENSG00000115942	ORC2	ORC2L	origin recognition complex subunit 2	protein-coding
31868	chr10	100169771	100169930	+	0	NA	intron (NM_006459, intron 6 of 10)	AluJr|SINE|Alu	16179	NM_001100626	10613		NM_006459	ENSG00000107566	ERLIN1	C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62	ER lipid raft associated 1	protein-coding
86378	chr16	66590281	66590950	+	0	NA	Intergenic	MER4C|LTR|ERV1	11152	NM_001199317	146225		NM_144673	ENSG00000140932	CMTM2	CKLFSF2	CKLF like MARVEL transmembrane domain containing 2	protein-coding
89356	chr16	88769221	88770050	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	15585	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
84743	chr16	30952551	30952650	+	0	NA	intron (NM_152288, intron 1 of 1)	MIR|SINE|MIR	3532	NM_152288	93129		NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
194720	chr6	33774671	33774830	+	0	NA	intron (NM_001348709, intron 8 of 8)	intron (NM_001348709, intron 8 of 8)	12192	NM_001143944	221496		NM_181336	ENSG00000161904	LEMD2	CTRCT42|LEM2|MARUPS|NET25|dJ482C21.1	LEM domain nuclear envelope protein 2	protein-coding
18704	chr1	167441121	167441500	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	77219	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
105016	chr17	82039971	82040550	+	0	NA	TTS (NR_159948)	TTS (NR_159948)	2342	NR_159948	113523640		NR_159947	ENSG00000264569	DCXR-DT	-	DCXR divergent transcript	ncRNA
156338	chr22	40728401	40729430	+	0	NA	Intergenic	LTR14B|LTR|ERVK	49431	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
143442	chr20	30291651	30291750	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-5163	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
214846	chr7	151310651	151310950	+	0	NA	Intergenic	AluSz|SINE|Alu	-31012	NM_001385355	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
162926	chr3	49428851	49430480	+	0	NA	promoter-TSS (NM_032316)	promoter-TSS (NM_032316)	-341	NM_032316	84276		NM_032316	ENSG00000145029	NICN1	-	nicolin 1, tubulin polyglutamylase complex subunit	protein-coding
134224	chr2	134716421	134716880	+	0	NA	intron (NM_030923, intron 1 of 7)	intron (NM_030923, intron 1 of 7)	2350	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
116548	chr19	18214521	18215550	+	0	NA	intron (NM_001330172, intron 13 of 15)	intron (NM_001330172, intron 13 of 15)	9458	NM_001098819	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
233941	chrX	2501901	2502480	+	0	NA	Intergenic	Intergenic	-1214	NM_145177	207063		NM_145177	ENSG00000169084	DHRSX	CXorf11|DHRS5X|DHRS5Y|DHRSXY|DHRSY|SDR46C1|SDR7C6	dehydrogenase/reductase X-linked	protein-coding
1524	chr1	3068051	3068150	+	0	NA	promoter-TSS (NR_015440)	promoter-TSS (NR_015440)	-375	NR_024371	440556		NM_198543	ENSG00000177133	PRDM16-DT	LINC00982|lnc-dPrdm16	PRDM16 divergent transcript	ncRNA
177696	chr4	121897951	121898400	+	0	NA	intron (NM_001366479, intron 9 of 10)	L1MA5A|LINE|L1	-27678	NM_018190	55212		NM_018190	ENSG00000138686	BBS7	BBS2L1	Bardet-Biedl syndrome 7	protein-coding
225280	chr9	34456751	34457200	+	0	NA	intron (NM_001184942, intron 1 of 5)	intron (NM_001184942, intron 1 of 5)	1595	NM_001184942	203259		NM_147202	ENSG00000164970	FAM219A	C9orf25	family with sequence similarity 219 member A	protein-coding
64158	chr14	22913501	22913700	+	0	NA	intron (NM_001352763, intron 1 of 14)	AluSx|SINE|Alu	5549	NM_001352765	55147		NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding
111770	chr19	4398771	4399600	+	0	NA	intron (NM_001199943, intron 1 of 8)	AluSz|SINE|Alu	1362	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
76049	chr15	72285921	72286330	+	0	NA	3' UTR (NM_001172685, exon 11 of 11)	3' UTR (NM_001172685, exon 11 of 11)	-13571	NR_136604	56965		NM_020213	ENSG00000137817	PARP6	ARTD17|PARP-6-B1|PARP-6-C|pART17	poly(ADP-ribose) polymerase family member 6	protein-coding
115257	chr19	14533771	14534330	+	0	NA	intron (NM_138501, intron 1 of 12)	intron (NM_138501, intron 1 of 12)	4456	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
16747	chr1	155296101	155296300	+	0	NA	intron (NM_181871, intron 2 of 10).2	MIR1_Amn|SINE|MIR	4752	NM_181871	5313		NM_000298	ENSG00000143627	PKLR	PK1|PKL|PKRL|RPK	pyruvate kinase L/R	protein-coding
26634	chr10	22482101	22482300	+	0	NA	Intergenic	Intergenic	-44271	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
166015	chr3	108292821	108293380	+	0	NA	Intergenic	MIRc|SINE|MIR	-3390	NM_001282559	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
38857	chr11	47336001	47336200	+	0	NA	intron (NM_000256, intron 24 of 33)	intron (NM_000256, intron 24 of 33)	16602	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
184159	chr5	95648071	95648230	+	0	NA	intron (NM_173362, intron 1 of 4)	intron (NM_173362, intron 1 of 4)	1271	NM_173362	317671		NM_173362	ENSG00000175449	RFESD	-	Rieske Fe-S domain containing	protein-coding
204922	chr7	6166371	6166530	+	0	NA	intron (NM_004227, intron 9 of 12)	intron (NM_004227, intron 9 of 12)	5687	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
80607	chr16	2955451	2955550	+	0	NA	Intergenic	Intergenic	-8775	NM_001253726	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
96921	chr17	42151871	42152030	+	0	NA	intron (NM_201434, intron 1 of 6)	intron (NM_201434, intron 1 of 6)	3039	NM_201434	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
64851	chr14	35220401	35220600	+	0	NA	intron (NM_001256678, intron 4 of 6)	intron (NM_001256678, intron 4 of 6)	-58058	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
175386	chr4	70711621	70711880	+	0	NA	intron (NM_001130709, intron 1 of 11)	intron (NM_001130709, intron 1 of 11)	6813	NM_001130709	22902		NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding
97653	chr17	44204601	44204800	+	0	NA	TTS (NM_014233)	TTS (NM_014233)	3139	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
179839	chr5	480371	480530	+	0	NA	non-coding (NR_125375, exon 7 of 7)	non-coding (NR_125375, exon 7 of 7)	7214	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
215054	chr7	152677601	152677800	+	0	NA	Intergenic	Intergenic	-1559	NM_005431	7516		NM_005431	ENSG00000196584	XRCC2	FANCU|POF17|SPGF50	X-ray repair cross complementing 2	protein-coding
52736	chr12	56629601	56631150	+	0	NA	promoter-TSS (NM_001300905)	promoter-TSS (NM_001300905)	-49	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
225001	chr9	33120051	33120550	+	0	NA	intron (NM_001378495, intron 3 of 5)	intron (NM_001378495, intron 3 of 5)	11608	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
226866	chr9	78075801	78076100	+	0	NA	Intergenic	L1PA4|LINE|L1	-44139	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
225334	chr9	34627601	34627830	+	0	NA	exon (NM_001371945, exon 2 of 7)	exon (NM_001371945, exon 2 of 7)	371	NM_001017363	138715		NM_001017363	ENSG00000205143	ARID3C	-	AT-rich interaction domain 3C	protein-coding
69535	chr14	96496301	96496700	+	0	NA	Intergenic	AluJr|SINE|Alu	5826	NR_122121	730202		NR_122121		PAPOLA-DT	-	PAPOLA divergent transcript	ncRNA
32761	chr10	104327651	104327750	+	0	NA	TTS (NR_120622)	TTS (NR_120622)	1292	NM_001272012	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
124568	chr2	656621	656950	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	19919	NM_001352681	129787		NM_152834	ENSG00000151353	TMEM18	lncND	transmembrane protein 18	protein-coding
55862	chr12	109385471	109385730	+	0	NA	Intergenic	Intergenic	-3119	NM_001101421	283446		NM_173597	ENSG00000174527	MYO1H	CCHS2	myosin IH	protein-coding
152474	chr22	20733871	20734480	+	0	NA	exon (NM_058004, exon 34 of 55)	exon (NM_058004, exon 34 of 55)	33061	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
13813	chr1	117613571	117613730	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	7602	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
165616	chr3	101688451	101689130	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2072	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
21030	chr1	203008751	203009050	+	0	NA	intron (NM_001322959, intron 2 of 6)	intron (NM_001322959, intron 2 of 6)	1269	NM_001349859	92703		NM_138391	ENSG00000163444	TMEM183A	C1orf37	transmembrane protein 183A	protein-coding
102270	chr17	75292651	75293150	+	0	NA	Intergenic	AluSg|SINE|Alu	-3451	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
14663	chr1	145768171	145768330	+	0	NA	intron (NM_014455, intron 4 of 8)	intron (NM_014455, intron 4 of 8)	48751	NM_007053	11126		NM_007053	ENSG00000117281	CD160	BY55|NK1|NK28	CD160 molecule	protein-coding
160508	chr3	30633571	30634030	+	0	NA	intron (NM_001024847, intron 2 of 7)	MER102a|DNA|hAT-Charlie	27199	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
94323	chr17	28776251	28776550	+	0	NA	intron (NM_001288633, intron 1 of 3)	intron (NM_001288633, intron 1 of 3)	32389	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
78022	chr15	89893521	89894780	+	0	NA	promoter-TSS (NR_037582)	promoter-TSS (NR_037582)	-156	NR_023361	10239		NM_005829	ENSG00000157823	AP3S2	AP3S3|sigma3b	adaptor related protein complex 3 subunit sigma 2	protein-coding
234027	chrX	3743551	3744400	+	0	NA	Intergenic	Intergenic	-30326	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
6056	chr1	27137001	27139050	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	17100	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
104029	chr17	80125621	80126250	+	0	NA	Intergenic	AluJr|SINE|Alu	21193	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
135960	chr2	172086621	172087150	+	0	NA	intron (NM_178120, intron 2 of 2)	CpG-16751	1378	NM_178120	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
177940	chr4	137532271	137532950	+	0	NA	promoter-TSS (NM_019035)	promoter-TSS (NM_019035)	-116	NM_019035	54510		NM_019035	ENSG00000189184	PCDH18	PCDH68L	protocadherin 18	protein-coding
191434	chr6	10528351	10529430	+	0	NA	5' UTR (NM_001374747, exon 1 of 3)	5' UTR (NM_001374747, exon 1 of 3)	520	NM_001374747	2651		NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein-coding
27205	chr10	28580301	28580500	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	47282	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
71338	chr14	105422871	105423480	+	0	NA	intron (NM_001203258, intron 1 of 20)	intron (NM_001203258, intron 1 of 20)	3348	NM_001203258	9112		NM_004689	ENSG00000182979	MTA1	-	metastasis associated 1	protein-coding
133191	chr2	112996601	112997400	+	0	NA	Intergenic	L1PA12|LINE|L1	-8459	NM_014440	27179		NM_014440	ENSG00000136694	IL36A	FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6	interleukin 36 alpha	protein-coding
94475	chr17	29270571	29270730	+	0	NA	intron (NM_020772, intron 2 of 3)	intron (NM_020772, intron 2 of 3)	23498	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
92918	chr17	16537971	16538130	+	0	NA	Intergenic	Intergenic	31154	NM_020653	57336		NM_020653	ENSG00000141040	ZNF287	ZKSCAN13|ZSCAN45	zinc finger protein 287	protein-coding
102543	chr17	75834151	75834730	+	0	NA	exon (NM_199242, exon 23 of 32)	exon (NM_199242, exon 23 of 32)	9964	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
26353	chr10	15419221	15419530	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-48086	NM_001010924	221061		NM_001010924	ENSG00000148468	FAM171A1	APCN|C10orf38	family with sequence similarity 171 member A1	protein-coding
205856	chr7	24948651	24949330	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	31188	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
230823	chr9	129050771	129050930	+	0	NA	intron (NR_138422, intron 6 of 13)	AluSx3|SINE|Alu	13916	NM_032809	84895		NM_032809	ENSG00000148343	MIGA2	C9orf54|FAM73B	mitoguardin 2	protein-coding
28297	chr10	46097851	46098150	+	0	NA	Intergenic	Intergenic	-11495	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
165134	chr3	71729731	71730830	+	0	NA	intron (NM_173359, intron 1 of 7)	MIRb|SINE|MIR	-1162	NM_001134650	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
125310	chr2	10678051	10678600	+	0	NA	intron (NM_024894, intron 3 of 20)	AluJr4|SINE|Alu	11650	NM_024894	79954		NM_024894	ENSG00000115761	NOL10	PQBP5	nucleolar protein 10	protein-coding
79280	chr16	532901	533630	+	0	NA	intron (NM_005632, intron 1 of 13)	intron (NM_005632, intron 1 of 13)	-2051	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	ncRNA
8643	chr1	41742771	41743380	+	0	NA	intron (NM_024503, intron 1 of 8)	MER20B|DNA|hAT-Charlie	175847	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
124596	chr2	866001	866200	+	0	NA	intron (NR_033880, intron 1 of 3)	intron (NR_033880, intron 1 of 3)	2326	NR_111963	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
210871	chr7	101141871	101142030	+	0	NA	Intergenic	AluSx|SINE|Alu	-12526	NM_001283	1174		NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A	adaptor related protein complex 1 subunit sigma 1	protein-coding
226898	chr9	78369671	78369950	+	0	NA	Intergenic	Intergenic	72685	NM_058179	29968		NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding
116989	chr19	18890101	18890300	+	0	NA	intron (NM_021267, intron 2 of 7)	L2a|LINE|L2	5958	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
22699	chr1	223990521	223990780	+	0	NA	intron (NR_132119, intron 1 of 10)	intron (NR_132119, intron 1 of 10)	1994	NR_132119	441124		NR_132119		GTF2IP20	-	general transcription factor IIi pseudogene 20	pseudo
20051	chr1	185538771	185538930	+	0	NA	Intergenic	MER11C|LTR|ERVK	89638	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
14009	chr1	120716971	120717330	+	0	NA	Intergenic	Intergenic	-6789	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
147984	chr20	63003701	63004100	+	0	NA	Intergenic	Intergenic	3064	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
132456	chr2	105863951	105865830	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	13043	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
123058	chr19	51342721	51343380	+	0	NA	promoter-TSS (NM_001163922)	promoter-TSS (NM_001163922)	-926	NM_001163922	147645		NM_001163922	ENSG00000186806	VSIG10L	-	V-set and immunoglobulin domain containing 10 like	protein-coding
104247	chr17	80737301	80737500	+	0	NA	intron (NM_020761, intron 5 of 33)	intron (NM_020761, intron 5 of 33)	68232	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
179765	chr5	271041	273000	+	0	NA	promoter-TSS (NR_104613)	promoter-TSS (NR_104613)	374	NM_001267559	10016		NM_013232	ENSG00000249915	PDCD6	ALG-2|ALG2|PEF1B	programmed cell death 6	protein-coding
234249	chrX	13093701	13094250	+	0	NA	Intergenic	Intergenic	-49355	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
59471	chr13	26072471	26072930	+	0	NA	Intergenic	Intergenic	-13178	NR_146971	107984009		NR_146971		LINC00415	-	long intergenic non-protein coding RNA 415	ncRNA
53791	chr12	68991551	68991650	+	0	NA	Intergenic	L1PA3|LINE|L1	-28360	NM_001874	1368		NM_001874	ENSG00000135678	CPM	-	carboxypeptidase M	protein-coding
129805	chr2	71453501	71454280	+	0	NA	5' UTR (NM_001130977, exon 1 of 55)	5' UTR (NM_001130977, exon 1 of 55)	329	NM_001130976	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
104323	chr17	80950871	80951030	+	0	NA	intron (NM_020761, intron 28 of 33)	MIRc|SINE|MIR	20263	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
74707	chr15	63093521	63093900	+	0	NA	Intergenic	Intergenic	-28151	NM_032857	114294		NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
152102	chr22	19874321	19874850	+	0	NA	TTS (NM_001352301)	TTS (NM_001352301)	-19711	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
113338	chr19	8612801	8613780	+	0	NA	Intergenic	AluSg|SINE|Alu	-2575	NM_030957	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
11416	chr1	89718851	89718950	+	0	NA	3' UTR (NM_032270, exon 3 of 3)	3' UTR (NM_032270, exon 3 of 3)	85780	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
129661	chr2	70250351	70250450	+	0	NA	Intergenic	AluSx|SINE|Alu	-1607	NM_001351512	7072		NM_022037	ENSG00000116001	TIA1	ALS26|TIA-1|WDM	TIA1 cytotoxic granule associated RNA binding protein	protein-coding
64396	chr14	24165151	24166030	+	0	NA	intron (NM_001385400, intron 8 of 9)	intron (NM_001385400, intron 8 of 9)	4325	NM_001385400	10379		NM_006084	ENSG00000213928	IRF9	IRF-9|ISGF3|ISGF3G|p48	interferon regulatory factor 9	protein-coding
177668	chr4	121696121	121698530	+	0	NA	promoter-TSS (NM_001154)	promoter-TSS (NM_001154)	-345	NM_001154	308		NM_001154	ENSG00000164111	ANXA5	ANX5|CPB-I|ENX2|HEL-S-7|PP4|RPRGL3|VAC-alph	annexin A5	protein-coding
42376	chr11	68827721	68827980	+	0	NA	intron (NM_001031847, intron 1 of 18)	intron (NM_001031847, intron 1 of 18)	14066	NM_001876	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
135648	chr2	168346521	168347280	+	0	NA	Intergenic	Intergenic	-99305	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
216082	chr8	10850501	10850900	+	0	NA	Intergenic	Intergenic	10674	NR_125432	101929229		NR_125432		PINX1-DT	-	PINX1 divergent transcript	ncRNA
37451	chr11	18105451	18106350	+	0	NA	intron (NM_138421, intron 1 of 11)	CpG	182	NM_138421	113174		NM_138421	ENSG00000166788	SAAL1	SPACIA1	serum amyloid A like 1	protein-coding
204044	chr7	1941851	1942580	+	0	NA	intron (NM_001304524, intron 14 of 16)	intron (NM_001304524, intron 14 of 16)	-1644	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
103695	chr17	78812971	78813680	+	0	NA	intron (NR_169585, intron 12 of 19)	intron (NR_169585, intron 12 of 19)	27489	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
35877	chr11	2393021	2393880	+	0	NA	intron (NM_004356, intron 2 of 7)	intron (NM_004356, intron 2 of 7)	-7300	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
24951	chr10	1542601	1543000	+	0	NA	intron (NR_033387, intron 1 of 1)	intron (NR_033387, intron 1 of 1)	-3960	NR_152792	642394		NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168	ADARB2 antisense RNA 1	ncRNA
239050	chrY	7275701	7277150	+	0	NA	intron (NR_028062, intron 1 of 7)	intron (NR_028062, intron 1 of 7)	2453	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
47380	chr12	2690471	2691400	+	0	NA	exon (NM_001129833, exon 47 of 47)	exon (NM_001129833, exon 47 of 47)	222	NR_045725	100652846		NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	ncRNA
119964	chr19	41891001	41891430	+	0	NA	intron (NM_198977, intron 4 of 27)	MIR|SINE|MIR	6772	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
10909	chr1	83507851	83508690	+	0	NA	Intergenic	Intergenic	62216	NR_146478	101927542		NR_146478		LINC01712	-	long intergenic non-protein coding RNA 1712	ncRNA
12614	chr1	109092671	109092830	+	0	NA	intron (NR_136242, intron 2 of 3)	intron (NR_136242, intron 2 of 3)	1986	NR_136242	56900		NM_020141	ENSG00000215717	TMEM167B	AD-020|C1orf119	transmembrane protein 167B	protein-coding
61511	chr13	52968101	52968380	+	0	NA	Intergenic	Intergenic	-60573	NM_006418	10562		NM_006418	ENSG00000102837	OLFM4	GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD|pDP4	olfactomedin 4	protein-coding
65519	chr14	51905501	51906200	+	0	NA	intron (NM_053064, intron 2 of 3)	THE1C|LTR|ERVL-MaLR	12721	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
97334	chr17	43269021	43269300	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2337	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
12775	chr1	109655671	109656730	+	0	NA	non-coding (NR_024538, exon 1 of 7)	non-coding (NR_024538, exon 1 of 7)	101	NM_000850	2948		NM_000850	ENSG00000168765	GSTM4	GSTM4-4|GTM4	glutathione S-transferase mu 4	protein-coding
53982	chr12	74897601	74898400	+	0	NA	Intergenic	Intergenic	311748	NM_139136	3747		NM_139136	ENSG00000166006	KCNC2	DEE103|KV3.2	potassium voltage-gated channel subfamily C member 2	protein-coding
31378	chr10	94280071	94280330	+	0	NA	non-coding (NR_033969, exon 4 of 4)	non-coding (NR_033969, exon 4 of 4)	6870	NR_033969	100128054		NR_033969	ENSG00000268894	PLCE1-AS1	-	PLCE1 antisense RNA 1	ncRNA
86868	chr16	67963901	67964100	+	0	NA	promoter-TSS (NM_001145963)	promoter-TSS (NM_001145963)	52	NM_001145963	6560		NM_005072	ENSG00000124067	SLC12A4	CTC-479C5.17|KCC1|hKCC1	solute carrier family 12 member 4	protein-coding
85975	chr16	57349221	57349630	+	0	NA	Intergenic	Intergenic	-9358	NM_002990	6367		NM_002990	ENSG00000102962	CCL22	A-152E5.1|ABCD-1|DC/B-CK|MDC|SCYA22|STCP-1	C-C motif chemokine ligand 22	protein-coding
183510	chr5	79535871	79536030	+	0	NA	Intergenic	Intergenic	-21816	NM_004272	9456		NM_004272	ENSG00000152413	HOMER1	HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1	homer scaffold protein 1	protein-coding
107644	chr18	48973501	48973800	+	0	NA	Intergenic	Intergenic	-22939	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
66544	chr14	61837421	61838000	+	0	NA	intron (NM_001367652, intron 1 of 6)	intron (NM_001367652, intron 1 of 6)	25007	NM_001367656	83851		NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r	synaptotagmin 16	protein-coding
4101	chr1	19249801	19250300	+	0	NA	intron (NM_001271428, intron 1 of 22)	AluSp|SINE|Alu	1474	NM_001271429	23065		NM_015047	ENSG00000127463	EMC1	CAVIPMR|KIAA0090	ER membrane protein complex subunit 1	protein-coding
228925	chr9	113155921	113156930	+	0	NA	intron (NM_001860, intron 1 of 3)	intron (NM_001860, intron 1 of 3)	5418	NM_001860	1318		NM_001860	ENSG00000136867	SLC31A2	COPT2|CTR2|hCTR2	solute carrier family 31 member 2	protein-coding
186023	chr5	133998071	133998230	+	0	NA	intron (NM_003374, intron 1 of 8)	intron (NM_003374, intron 1 of 8)	6618	NR_036624								
13449	chr1	114482421	114483230	+	0	NA	intron (NM_033020, intron 1 of 18)	MSTA|LTR|ERVL-MaLR	28378	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
169609	chr3	171248701	171249700	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-142441	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
229235	chr9	114928951	114929800	+	0	NA	intron (NM_001244, intron 1 of 3)	intron (NM_001244, intron 1 of 3)	1216	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
175501	chr4	73292651	73292750	+	0	NA	Intergenic	L1PA7|LINE|L1	-33902	NM_032217	26057		NM_015574	ENSG00000132466	ANKRD17	CAGS|GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding
57943	chr12	123709471	123710200	+	0	NA	Intergenic	Intergenic	-2518	NM_012463	23545		NM_012463	ENSG00000185344	ATP6V0A2	A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS|a2V	ATPase H+ transporting V0 subunit a2	protein-coding
12255	chr1	100446971	100447380	+	0	NA	intron (NM_001319212, intron 7 of 13)	MamGypsy2-I|LTR|Gypsy	-90964	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
66052	chr14	58349771	58350130	+	0	NA	intron (NM_023000, intron 15 of 23)	AluSc|SINE|Alu	-45980	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
101675	chr17	68350801	68351200	+	0	NA	intron (NM_001352901, intron 4 of 11)	intron (NM_001352901, intron 4 of 11)	58865	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
108478	chr18	70667251	70667450	+	0	NA	Intergenic	(TCCCT)n|Simple_repeat|Simple_repeat	-16396	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
78392	chr15	91871151	91871450	+	0	NA	intron (NR_135775, intron 1 of 10)	HAL1b|LINE|L1	16996	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
94093	chr17	27631021	27632150	+	0	NA	intron (NM_009587, intron 1 of 10)	intron (NM_009587, intron 1 of 10)	397	NM_009587	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
86161	chr16	57761151	57761250	+	0	NA	intron (NM_001130099, intron 13 of 18)	intron (NM_001130099, intron 13 of 18)	11152	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
37110	chr11	13293521	13293780	+	0	NA	intron (NR_147787, intron 1 of 19)	intron (NR_147787, intron 1 of 19)	15860	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
199700	chr6	125099421	125099830	+	0	NA	Intergenic	CpG	-54148	NM_001003396	7164		NM_003287	ENSG00000111907	TPD52L1	D53|TPD53	TPD52 like 1	protein-coding
50175	chr12	45988321	45988780	+	0	NA	intron (NM_004719, intron 1 of 14)	intron (NM_004719, intron 1 of 14)	2024	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
196503	chr6	43666971	43667640	+	0	NA	intron (NM_001193341, intron 5 of 5)	intron (NM_001193341, intron 5 of 5)	20486	NM_018135	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
204450	chr7	4204771	4205150	+	0	NA	intron (NM_001079653, intron 9 of 19)	intron (NM_001079653, intron 9 of 19)	-70123	NR_158215	105375131		NR_158215		LOC105375131	-	uncharacterized LOC105375131	ncRNA
20826	chr1	201435751	201436400	+	0	NA	Intergenic	Intergenic	-14345	NM_003281	7135		NM_003281	ENSG00000159173	TNNI1	SSTNI|TNN1	troponin I1, slow skeletal type	protein-coding
167407	chr3	128996801	128997000	+	0	NA	intron (NM_001348521, intron 1 of 15)	MLT1H|LTR|ERVL-MaLR	-2824	NM_020741	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
169959	chr3	179174401	179174600	+	0	NA	intron (NM_006218, intron 1 of 20)	intron (NM_006218, intron 1 of 20)	26143	NM_006218	5290		NM_006218	ENSG00000121879	PIK3CA	CCM4|CLAPO|CLOVE|CWS5|HMH|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding
1874	chr1	6426101	6426850	+	0	NA	intron (NM_031475, intron 1 of 12)	intron (NM_031475, intron 1 of 12)	1699	NM_001367474	83715		NM_031475	ENSG00000187017	ESPN	DFNB36|LP2654|USH1M	espin	protein-coding
239444	chrY	56708651	56708950	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-245455	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
218147	chr8	41822701	41823050	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	-25253	NM_020477	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
70684	chr14	103097271	103097430	+	0	NA	Intergenic	Intergenic	-2794	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
3685	chr1	16509971	16510280	+	0	NA	Intergenic	AluSg|SINE|Alu	4160	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
230241	chr9	127882171	127883100	+	0	NA	Intergenic	Intergenic	-3014	NM_001318121	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
210377	chr7	99625901	99626300	+	0	NA	intron (NM_001350984, intron 7 of 7)	intron (NM_001350984, intron 7 of 7)	9154	NM_001350984	221785		NM_145115	ENSG00000197037	ZSCAN25	ZNF498	zinc finger and SCAN domain containing 25	protein-coding
24248	chr1	236280651	236281380	+	0	NA	intron (NM_019891, intron 1 of 15)	intron (NM_019891, intron 1 of 15)	943	NM_019891	56605		NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding
118997	chr19	38890071	38890430	+	0	NA	intron (NR_034146, intron 2 of 13)	MIRb|SINE|MIR	3905	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
87138	chr16	69132031	69133600	+	0	NA	promoter-TSS (NM_001039690)	promoter-TSS (NM_001039690)	166	NM_032830	84916		NM_032830	ENSG00000141076	UTP4	CIRH1A|CIRHIN|NAIC|TEX292	UTP4 small subunit processome component	protein-coding
158917	chr3	10013351	10013830	+	0	NA	Intergenic	Intergenic	-2342	NM_018447	55831		NM_018447	ENSG00000125037	EMC3	POB|TMEM111	ER membrane protein complex subunit 3	protein-coding
106153	chr18	9911901	9912600	+	0	NA	Intergenic	AluYh3|SINE|Alu	-1766	NM_003574	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
154057	chr22	30598751	30599050	+	0	NA	intron (NM_001282327, intron 2 of 16)	AluSz|SINE|Alu	-6990	NM_014303	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
188648	chr5	157235451	157235750	+	0	NA	intron (NM_005546, intron 8 of 16)	intron (NM_005546, intron 8 of 16)	-30523	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
181445	chr5	41754871	41755150	+	0	NA	intron (NM_001364302, intron 13 of 15)	intron (NM_001364302, intron 13 of 15)	88647	NM_001364303	5019		NM_000436	ENSG00000083720	OXCT1	OXCT|SCOT	3-oxoacid CoA-transferase 1	protein-coding
183767	chr5	81742671	81743030	+	0	NA	intron (NM_001256733, intron 1 of 15)	AluSx|SINE|Alu	8403	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
107743	chr18	50284421	50284850	+	0	NA	intron (NM_014593, intron 8 of 14)	intron (NM_014593, intron 8 of 14)	-2861	NM_001323954	4152		NM_002384	ENSG00000141644	MBD1	CXXC3|PCM1|RFT	methyl-CpG binding domain protein 1	protein-coding
192318	chr6	21877101	21877330	+	0	NA	intron (NR_015410, intron 4 of 11)	L1PB1|LINE|L1	210802	NR_015410	401237		NR_015410		CASC15	CANT|LINC00340|lnc-SOX4-1	cancer susceptibility 15	ncRNA
222403	chr8	134311451	134312050	+	0	NA	Intergenic	Intergenic	-286321	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
151987	chr22	19169251	19170080	+	0	NA	Intergenic	CpG	-2041	NR_103767	100652736		NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
87831	chr16	75629621	75629880	+	0	NA	intron (NM_001378148, intron 11 of 13)	AluSx|SINE|Alu	-6469	NM_001324448	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
90822	chr17	2279921	2280180	+	0	NA	intron (NM_017575, intron 8 of 18)	L2c|LINE|L2	-13865	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
51225	chr12	50758501	50758700	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-5501	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
29645	chr10	71850371	71851830	+	0	NA	intron (NM_002778, intron 1 of 13)	CpG	151	NM_002778	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
187474	chr5	142140951	142142100	+	0	NA	intron (NM_030571, intron 6 of 7)	intron (NM_030571, intron 6 of 7)	32746	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
90993	chr17	2748471	2748630	+	0	NA	promoter-TSS (NR_031654)	promoter-TSS (NR_031654)	-368	NR_031654	100302208		NR_031654	ENSG00000221200	MIR1253	MIRN1253|hsa-mir-1253	microRNA 1253	ncRNA
238775	chrX	154360201	154360400	+	0	NA	exon (NM_001456, exon 22 of 47)	exon (NM_001456, exon 22 of 47)	14334	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
31667	chr10	97424351	97424680	+	0	NA	intron (NR_157582, intron 1 of 1)	AluSz|SINE|Alu	1542	NR_157582	644215		NR_157582		LOC644215	-	uncharacterized LOC644215	ncRNA
214879	chr7	151402851	151403150	+	0	NA	intron (NM_001284261, intron 1 of 4)	MER2B|DNA|TcMar-Tigger	-6161	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
2629	chr1	10212151	10212880	+	0	NA	intron (NM_001365952, intron 1 of 48)	intron (NM_001365952, intron 1 of 48)	899	NM_001365952	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
210520	chr7	100223401	100223680	+	0	NA	intron (NR_028040, intron 4 of 5)	intron (NR_028040, intron 4 of 5)	4292	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
100021	chr17	57956301	57956800	+	0	NA	Intergenic	Intergenic	-1138	NM_001271875	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
64026	chr14	22515161	22515700	+	0	NA	Intergenic	L3b|LINE|CR1	-32471	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
169731	chr3	172341451	172341830	+	0	NA	intron (NM_022763, intron 17 of 25)	intron (NM_022763, intron 17 of 25)	106816	NM_004122	2693		NM_004122	ENSG00000121853	GHSR	GHDP|GHS-R1a|GHSR-1a	growth hormone secretagogue receptor	protein-coding
46363	chr11	126083771	126084730	+	0	NA	Intergenic	Intergenic	-20958	NM_016952	50937		NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|Ihog|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
187102	chr5	140358621	140358950	+	0	NA	Intergenic	L2a|LINE|L2	-1409	NM_001258427	83697		NM_031467	ENSG00000113073	SLC4A9	AE4	solute carrier family 4 member 9	protein-coding
131171	chr2	92041671	92041830	+	0	NA	Intergenic	Intergenic	100617	NR_027714	440888		NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
40061	chr11	62745001	62745200	+	0	NA	Intergenic	AluY|SINE|Alu	9060	NM_001370809	79842		NM_024784	ENSG00000185670	ZBTB3	-	zinc finger and BTB domain containing 3	protein-coding
111123	chr19	3228351	3229050	+	0	NA	intron (NR_033342, intron 1 of 12)	CpG	3422	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
88437	chr16	84766951	84767250	+	0	NA	intron (NM_005153, intron 10 of 13)	intron (NM_005153, intron 10 of 13)	-52885	NM_031476	83716		NM_031476	ENSG00000103196	CRISPLD2	CRISP11|LCRISP2|LGL1	cysteine rich secretory protein LCCL domain containing 2	protein-coding
139429	chr2	222865421	222865880	+	0	NA	intron (NM_001354159, intron 1 of 14)	L2c|LINE|L2	4614	NM_001354158	2181		NM_004457	ENSG00000123983	ACSL3	ACS3|FACL3|LACS 3|LACS3|PRO2194	acyl-CoA synthetase long chain family member 3	protein-coding
209427	chr7	76362021	76362280	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3159	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
10136	chr1	59759321	59759700	+	0	NA	intron (NM_001244714, intron 13 of 13)	intron (NM_001244714, intron 13 of 13)	-13285	NR_110627	101926944		NR_110627		LOC101926944	-	uncharacterized LOC101926944	ncRNA
125163	chr2	10039901	10040300	+	0	NA	Intergenic	Intergenic	3301	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
137627	chr2	197328421	197329150	+	0	NA	Intergenic	Intergenic	-18005	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
119132	chr19	39369721	39370180	+	0	NA	exon (NM_001384584, exon 5 of 15)	exon (NM_001384584, exon 5 of 15)	21156	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
75837	chr15	69463971	69464680	+	0	NA	Intergenic	Intergenic	11507	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
207629	chr7	45021421	45022130	+	0	NA	intron (NM_001167934, intron 1 of 8)	intron (NM_001167934, intron 1 of 8)	-5859	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
45536	chr11	118752951	118753630	+	0	NA	intron (NM_004397, intron 13 of 13)	AluSq2|SINE|Alu	37658	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
150853	chr21	44078371	44079200	+	0	NA	intron (NM_003274, intron 11 of 22)	intron (NM_003274, intron 11 of 22)	4461	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
215440	chr7	157693251	157693980	+	0	NA	intron (NM_130842, intron 11 of 21)	CpG	-119193	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
84784	chr16	31012051	31012350	+	0	NA	Intergenic	L2b|LINE|L2	-1562	NM_052874	112755		NM_052874	ENSG00000099365	STX1B	GEFSP9|STX1B1|STX1B2	syntaxin 1B	protein-coding
153567	chr22	26658401	26659680	+	0	NA	intron (NR_033319, intron 1 of 3)	intron (NR_033319, intron 1 of 3)	1558	NR_033319	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
25797	chr10	11179901	11181100	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	15470	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
33557	chr10	119312271	119314450	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	-64612	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
149021	chr21	14550121	14550850	+	0	NA	intron (NM_001256370, intron 2 of 8)	intron (NM_001256370, intron 2 of 8)	-4125	NM_001286523	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
112158	chr19	5630971	5631330	+	0	NA	intron (NM_001320571, intron 2 of 18)	AluSx1|SINE|Alu	8067	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
165962	chr3	107910751	107911080	+	0	NA	intron (NR_015394, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	27710	NR_015394	285205		NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
186329	chr5	134646501	134646700	+	0	NA	Intergenic	AluJr|SINE|Alu	-2185	NM_001252231	10802		NM_021982	ENSG00000113615	SEC24A	-	SEC24 homolog A, COPII coat complex component	protein-coding
60926	chr13	46220201	46220400	+	0	NA	intron (NM_001282460, intron 2 of 9)	L1PA8A|LINE|L1	8372	NM_001282460	220416		NM_001024609	ENSG00000173988	LRRC63	-	leucine rich repeat containing 63	protein-coding
79466	chr16	735751	735850	+	0	NA	intron (NM_022493, intron 4 of 10)	MER54B|LTR|ERVL	5197	NM_022493	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
44961	chr11	116837421	116837680	+	0	NA	promoter-TSS (NM_000039)	promoter-TSS (NM_000039)	72	NM_001318018	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
113461	chr19	9865721	9866650	+	0	NA	intron (NM_058164, intron 1 of 5)	intron (NM_058164, intron 1 of 5)	-8010	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
63608	chr14	20608651	20609700	+	0	NA	Intergenic	Intergenic	-18352	NM_001024822	493901		NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
18513	chr1	161770551	161770650	+	0	NA	intron (NM_007348, intron 1 of 15)	MLT1B|LTR|ERVL-MaLR	4280	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
143711	chr20	32248871	32249980	+	0	NA	Intergenic	L1ME1|LINE|L1	11630	NR_031726	100302183		NR_031726	ENSG00000284125	MIR1825	MIRN1825|hsa-mir-1825	microRNA 1825	ncRNA
234276	chrX	13486921	13487500	+	0	NA	Intergenic	Intergenic	-82391	NM_015507	25975		NM_015507	ENSG00000198759	EGFL6	MAEG|W80	EGF like domain multiple 6	protein-coding
180151	chr5	1379051	1379480	+	0	NA	intron (NR_125810, intron 1 of 1)	intron (NR_125810, intron 1 of 1)	808	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
75014	chr15	64030951	64031050	+	0	NA	intron (NM_001385000, intron 2 of 11)	(AC)n|Simple_repeat|Simple_repeat	15485	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
49904	chr12	39445801	39446200	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-2880	NM_017641	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
113790	chr19	10557571	10557930	+	0	NA	intron (NM_023008, intron 15 of 18)	CpG	5628	NR_031603	100302226		NR_031603	ENSG00000221410	MIR1238	MIRN1238|hsa-mir-1238	microRNA 1238	ncRNA
88955	chr16	87846651	87847350	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-6896	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
153710	chr22	29281521	29281950	+	0	NA	intron (NM_001163286, intron 5 of 15)	AluY|SINE|Alu	13467	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
235112	chrX	40644621	40645580	+	0	NA	intron (NM_001330455, intron 2 of 6)	L2|LINE|L2	2461	NM_144970	159013		NM_144970	ENSG00000185753	CXorf38	-	chromosome X open reading frame 38	protein-coding
190842	chr6	1608601	1609230	+	0	NA	promoter-TSS (NM_001453)	promoter-TSS (NM_001453)	-1000	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
51672	chr12	53064921	53065200	+	0	NA	TTS (NM_015319)	TTS (NM_015319)	8116	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
69114	chr14	92517901	92518100	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	4219	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
188960	chr5	161547551	161547880	+	0	NA	promoter-TSS (NM_001371727)	promoter-TSS (NM_001371727)	409	NM_021911	2561		NM_000813	ENSG00000145864	GABRB2	DEE92|ICEE2	gamma-aminobutyric acid type A receptor subunit beta2	protein-coding
159020	chr3	10603071	10603880	+	0	NA	intron (NM_001353564, intron 1 of 20)	MamRep434|DNA|TcMar-Tigger	16486	NM_001353564	491		NM_001683	ENSG00000157087	ATP2B2	DFNA82|PMCA2|PMCA2a|PMCA2i	ATPase plasma membrane Ca2+ transporting 2	protein-coding
202524	chr6	158573771	158573930	+	0	NA	intron (NR_164859, intron 2 of 16)	intron (NR_164859, intron 2 of 16)	13759	NM_001376852	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
107776	chr18	51042451	51042950	+	0	NA	intron (NM_005359, intron 1 of 11)	AluJo|SINE|Alu	12487	NM_005359	4089		NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding
210226	chr7	99350571	99350730	+	0	NA	intron (NM_001190996, intron 5 of 9)	AluJo|SINE|Alu	-24080	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
130844	chr2	87219101	87219380	+	0	NA	Intergenic	Intergenic	24454	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
97304	chr17	43229551	43230200	+	0	NA	promoter-TSS (NR_047479)	promoter-TSS (NR_047479)	-864	NR_047479	100874261		NM_001363254	ENSG00000236383	CCDC200	LINC00854|TMEM106A-AS1	coiled-coil domain containing 200	protein-coding
65271	chr14	49982271	49983030	+	0	NA	intron (NR_126498, intron 3 of 3)	intron (NR_126498, intron 3 of 3)	10484	NR_126499	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
61279	chr13	50123501	50125000	+	0	NA	intron (NR_109974, intron 2 of 6)	CpG	1291	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
184153	chr5	95632021	95632880	+	0	NA	Intergenic	MER50|LTR|ERV1	12363	NM_199243	285601		NM_199243	ENSG00000178015	GPR150	PGR11	G protein-coupled receptor 150	protein-coding
32646	chr10	103748151	103748450	+	0	NA	intron (NR_038940, intron 1 of 2)	intron (NR_038940, intron 1 of 2)	1521	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
226115	chr9	62899801	62900350	+	0	NA	TTS (NR_126047)	TTS (NR_126047)	-1988	NR_122076	403323		NM_203449		LERFS	-	lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting	ncRNA
23548	chr1	229269471	229270280	+	0	NA	intron (NR_149312, intron 1 of 2)	intron (NR_149312, intron 1 of 2)	-1187	NR_073545	5867		NM_004578	ENSG00000168118	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
235728	chrX	48919901	48920900	+	0	NA	Intergenic	Intergenic	-1376	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
11773	chr1	92466671	92467230	+	0	NA	Intergenic	Intergenic	17004	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
19351	chr1	173852521	173853250	+	0	NA	TTS (NM_001365213)	TTS (NM_001365213)	-10363	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
10939	chr1	84154951	84155050	+	0	NA	intron (NM_182948, intron 1 of 9)	L1M3|LINE|L1	-9184	NM_001242857	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
239350	chrY	19498551	19499280	+	0	NA	intron (NR_033732, intron 1 of 10)	intron (NR_033732, intron 1 of 10)	4238	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
149545	chr21	33069901	33070830	+	0	NA	exon (NM_138983, exon 1 of 1)	exon (NM_138983, exon 1 of 1)	224	NM_138983	116448		NM_138983	ENSG00000184221	OLIG1	BHLHB6|BHLHE21	oligodendrocyte transcription factor 1	protein-coding
187961	chr5	149359571	149359880	+	0	NA	intron (NM_001301057, intron 1 of 5)	intron (NM_001301057, intron 1 of 5)	1679	NM_001301054	78991		NM_024028	ENSG00000145882	PCYOX1L	-	prenylcysteine oxidase 1 like	protein-coding
198896	chr6	109519701	109519900	+	0	NA	intron (NM_001145128, intron 29 of 40)	L1PA16|LINE|L1	-36563	NM_001164313	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
102988	chr17	76734201	76734630	+	0	NA	TTS (NM_001302705)	TTS (NM_001302705)	2133	NR_030366	693221		NR_030366	ENSG00000283805	MIR636	MIRN636|hsa-mir-636	microRNA 636	ncRNA
216382	chr8	17913671	17914150	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-8947	NM_001352660	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
161430	chr3	41963321	41963580	+	0	NA	Intergenic	AluSx|SINE|Alu	-1347	NR_136342	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
18970	chr1	169043901	169044750	+	0	NA	intron (NR_104091, intron 3 of 4)	L2c|LINE|L2	42680	NR_104091	101978719		NR_104091	ENSG00000203601	LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
204344	chr7	2862521	2863200	+	0	NA	Intergenic	AluSg|SINE|Alu	-18552	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
10288	chr1	64844171	64844330	+	0	NA	intron (NM_001321857, intron 16 of 24)	intron (NM_001321857, intron 16 of 24)	99175	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
154965	chr22	37269921	37270380	+	0	NA	Intergenic	L1MA5|LINE|L1	-12358	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
91187	chr17	3886071	3886230	+	0	NA	intron (NM_172207, intron 1 of 15)	intron (NM_172207, intron 1 of 15)	4593	NM_172206	84254		NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding
41426	chr11	66059571	66059930	+	0	NA	intron (NM_006842, intron 12 of 21)	intron (NM_006842, intron 12 of 21)	6606	NR_145738	109616986		NR_145738		SNORD13F	-	small nucleolar RNA, C/D box 13F	snoRNA
113038	chr19	7970851	7971380	+	0	NA	intron (NM_001419, intron 4 of 5)	intron (NM_001419, intron 4 of 5)	-27449	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
31444	chr10	95836751	95837050	+	0	NA	intron (NM_001164183, intron 2 of 7)	intron (NM_001164183, intron 2 of 7)	-71075	NM_001349008	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
115702	chr19	16207271	16207430	+	0	NA	intron (NM_001130524, intron 3 of 12)	intron (NM_001130524, intron 3 of 12)	9439	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
3781	chr1	16697901	16698700	+	0	NA	intron (NR_026567, intron 8 of 10)	intron (NR_026567, intron 8 of 10)	17045	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
105425	chr17	82866771	82867230	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-26978	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
60129	chr13	39051071	39051400	+	0	NA	Intergenic	Intergenic	12779	NM_001012754	387921		NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
104023	chr17	80122271	80122630	+	0	NA	Intergenic	Intergenic	20869	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
74737	chr15	63201371	63201830	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	11994	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
156127	chr22	40108051	40108750	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	63583	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
24897	chr10	1040171	1040850	+	0	NA	non-coding (NR_134301, exon 4 of 4)	non-coding (NR_134301, exon 4 of 4)	8376	NM_001317957	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
67012	chr14	67490271	67490430	+	0	NA	intron (NM_001348546, intron 1 of 2)	intron (NM_001348546, intron 1 of 2)	-1629	NM_001348543	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
234570	chrX	19749821	19750180	+	0	NA	intron (NM_001353892, intron 2 of 17)	MIR|SINE|MIR	49773	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
171822	chr4	671271	672450	+	0	NA	TTS (NR_033743)	TTS (NR_033743)	2416	NM_007100	521		NM_007100	ENSG00000169020	ATP5ME	ATP5I|ATP5K	ATP synthase membrane subunit e	protein-coding
83328	chr16	24755271	24755580	+	0	NA	intron (NM_001330520, intron 3 of 23)	intron (NM_001330520, intron 3 of 23)	25774	NM_014494	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
14039	chr1	120747301	120747580	+	0	NA	intron (NR_157049, intron 1 of 4)	Charlie16a|DNA|hAT-Charlie	23501	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
180662	chr5	18721851	18722150	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	914726	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
198437	chr6	106103301	106104280	+	0	NA	intron (NM_182907, intron 2 of 4)	intron (NM_182907, intron 2 of 4)	4849	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
36150	chr11	3139451	3139750	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	25710	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
144850	chr20	36890651	36890750	+	0	NA	3' UTR (NM_015474, exon 16 of 16)	3' UTR (NM_015474, exon 16 of 16)	14562	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
85884	chr16	57053951	57054250	+	0	NA	intron (NM_001384955, intron 24 of 47)	intron (NM_001384955, intron 24 of 47)	-38483	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
138558	chr2	207628351	207629180	+	0	NA	Intergenic	AluJr|SINE|Alu	-2712	NM_001330133	151194		NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase 21A, HSPA lysine	protein-coding
123358	chr19	53885401	53885600	+	0	NA	intron (NM_001316329, intron 3 of 18)	AluSx3|SINE|Alu	3303	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
154851	chr22	37118401	37118600	+	0	NA	Intergenic	Intergenic	-8787	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
179833	chr5	473901	476100	+	0	NA	exon (NM_004174, exon 16 of 17)	exon (NM_004174, exon 16 of 17)	1764	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
100545	chr17	62548151	62548450	+	0	NA	intron (NM_001375269, intron 6 of 20)	AluSx3|SINE|Alu	67187	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
78484	chr15	92911771	92912530	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	7751	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
42624	chr11	72227451	72228250	+	0	NA	intron (NM_001567, intron 1 of 27)	intron (NM_001567, intron 1 of 27)	3083	NM_001567	3636		NM_001567	ENSG00000165458	INPPL1	OPSMD|SHIP2	inositol polyphosphate phosphatase like 1	protein-coding
232825	chr9	136732271	136732630	+	0	NA	Intergenic	AluSx|SINE|Alu	-4266	NR_024543	84973		NM_032887	ENSG00000233016	SNHG7	NCRNA00061	small nucleolar RNA host gene 7	ncRNA
8640	chr1	41730251	41730550	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	188522	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
165101	chr3	71513251	71513550	+	0	NA	intron (NM_001012505, intron 2 of 6)	L2a|LINE|L2	28689	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
125010	chr2	9551001	9551830	+	0	NA	intron (NM_001382778, intron 1 of 18)	Tigger4|DNA|TcMar-Tigger	4415	NM_003183	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
22587	chr1	223123451	223124050	+	0	NA	intron (NM_003268, intron 5 of 5)	intron (NM_003268, intron 5 of 5)	19498	NM_003268	7100		NM_003268	ENSG00000187554	TLR5	MELIOS|SLE1|SLEB1|TIL3	toll like receptor 5	protein-coding
46945	chr11	134406521	134407380	+	0	NA	intron (NM_054025, intron 1 of 5)	intron (NM_054025, intron 1 of 5)	4968	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
187855	chr5	147781021	147781280	+	0	NA	intron (NM_014790, intron 1 of 20)	intron (NM_014790, intron 1 of 20)	1578	NM_001282282	9832		NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
225978	chr9	41232301	41232780	+	0	NA	Intergenic	AluSg4|SINE|Alu	-1215	NR_039688	100616184		NR_039688	ENSG00000276029	MIR4477A	-	microRNA 4477a	ncRNA
84145	chr16	29738051	29739380	+	0	NA	Intergenic	L1MEd|LINE|L1	7275	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
176418	chr4	89254621	89255480	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	52750	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
71308	chr14	105349951	105350250	+	0	NA	intron (NM_001243127, intron 2 of 23)	intron (NM_001243127, intron 2 of 23)	-34523	NM_001242787	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
183216	chr5	76269771	76270130	+	0	NA	intron (NM_014979, intron 4 of 12)	intron (NM_014979, intron 4 of 12)	-133335	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
234243	chrX	13081551	13082800	+	0	NA	Intergenic	Intergenic	-37555	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
27235	chr10	29470301	29470500	+	0	NA	exon (NM_001323599, exon 33 of 39)	exon (NM_001323599, exon 33 of 39)	60157	NR_110928	102724316		NR_003930	ENSG00000291093	SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
104329	chr17	80961171	80961680	+	0	NA	exon (NM_001163034, exon 27 of 30)	exon (NM_001163034, exon 27 of 30)	9788	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
191401	chr6	8131271	8131580	+	0	NA	Intergenic	Intergenic	-28830	NR_037618	100526837		NR_037618		EEF1E1-BLOC1S5	EEF1E1-MUTED	EEF1E1-BLOC1S5 readthrough (NMD candidate)	ncRNA
234327	chrX	14029301	14030280	+	0	NA	5' UTR (NM_017856, exon 1 of 5)	5' UTR (NM_017856, exon 1 of 5)	102	NM_017856	54960		NM_017856	ENSG00000046647	GEMIN8	FAM51A1	gem nuclear organelle associated protein 8	protein-coding
113974	chr19	10812951	10814000	+	0	NA	intron (NM_001005362, intron 14 of 19)	L1MA4|LINE|L1	4021	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
43781	chr11	86261421	86261900	+	0	NA	intron (NM_001330334, intron 6 of 9)	MSTD-int|LTR|ERVL-MaLR	-16673	NR_106813	102465452		NR_106813	ENSG00000283744	MIR6755	hsa-mir-6755	microRNA 6755	ncRNA
102549	chr17	75840801	75841000	+	0	NA	intron (NM_199242, intron 7 of 31)	intron (NM_199242, intron 7 of 31)	3504	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
147917	chr20	62906201	62906400	+	0	NA	intron (NM_001193369, intron 5 of 15)	intron (NM_001193369, intron 5 of 15)	20205	NM_001193370	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
21000	chr1	202805301	202805500	+	0	NA	intron (NM_006618, intron 1 of 26)	intron (NM_006618, intron 1 of 26)	3021	NM_006618	10765		NM_006618	ENSG00000117139	KDM5B	CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1	lysine demethylase 5B	protein-coding
232547	chr9	136346571	136347330	+	0	NA	intron (NM_001145638, intron 9 of 13)	intron (NM_001145638, intron 9 of 13)	-6107	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
225034	chr9	33150671	33151300	+	0	NA	intron (NM_001378495, intron 1 of 5)	(GATG)n|Simple_repeat|Simple_repeat	-15963	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
116212	chr19	17503971	17504530	+	0	NA	intron (NM_198580, intron 11 of 11)	L2b|LINE|L2	-7399	NM_012088	25796		NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
176685	chr4	100702051	100702150	+	0	NA	Intergenic	Intergenic	-26987	NR_046811	100874275		NR_046811	ENSG00000250223	LINC01216	EMCN-IT3	long intergenic non-protein coding RNA 1216	ncRNA
69505	chr14	95560771	95561280	+	0	NA	Intergenic	Intergenic	-12537	NR_146450	100506999		NR_146449	ENSG00000258390	LINC02318	-	long intergenic non-protein coding RNA 2318	ncRNA
156292	chr22	40492201	40493030	+	0	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-29175	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
100827	chr17	64104821	64105280	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	25094	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
230829	chr9	129067571	129067730	+	0	NA	intron (NR_138423, intron 12 of 16)	intron (NR_138423, intron 12 of 16)	-13461	NM_020438	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
42977	chr11	73777871	73778300	+	0	NA	Intergenic	AluSc|SINE|Alu	-9789	NR_134658	51642		NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48|mL48	mitochondrial ribosomal protein L48	protein-coding
64997	chr14	38107301	38107600	+	0	NA	Intergenic	Intergenic	-100454	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
123671	chr19	54916851	54917350	+	0	NA	Intergenic	L2|LINE|L2	10952	NM_001242356	9437		NM_004829	ENSG00000189430	NCR1	CD335|LY94|NK-p46|NKP46	natural cytotoxicity triggering receptor 1	protein-coding
225301	chr9	34562101	34562400	+	0	NA	intron (NM_147164, intron 4 of 9)	intron (NM_147164, intron 4 of 9)	-5762	NR_024369	415056		NR_024369	ENSG00000237159	CNTFR-AS1	-	CNTFR antisense RNA 1	ncRNA
52706	chr12	56572201	56572400	+	0	NA	intron (NM_002898, intron 5 of 13)	AluSx|SINE|Alu	50480	NM_002898	5939		NM_002898	ENSG00000076067	RBMS2	SCR3	RNA binding motif single stranded interacting protein 2	protein-coding
215354	chr7	157381651	157381950	+	0	NA	intron (NM_001363676, intron 5 of 6)	intron (NM_001363676, intron 5 of 6)	44796	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
6441	chr1	28235791	28237250	+	0	NA	3' UTR (NM_178191, exon 2 of 2)	3' UTR (NM_178191, exon 2 of 2)	396	NM_016311	93974		NM_016311	ENSG00000130770	ATP5IF1	ATPI|ATPIF1|ATPIP|IP	ATP synthase inhibitory factor subunit 1	protein-coding
90340	chr17	1183301	1184680	+	0	NA	intron (NM_001322841, intron 1 of 22)	AluSx|SINE|Alu	3282	NM_001159746	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
38991	chr11	47595151	47595750	+	0	NA	Intergenic	Intergenic	-1039	NM_031909	114900		NM_031909	ENSG00000172247	C1QTNF4	CTRP4|ZACRP4	C1q and TNF related 4	protein-coding
116983	chr19	18881101	18881300	+	0	NA	intron (NM_021267, intron 3 of 7)	intron (NM_021267, intron 3 of 7)	14958	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
80637	chr16	2990751	2991050	+	0	NA	intron (NR_033861, intron 2 of 4)	intron (NR_033861, intron 2 of 4)	1846	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
1139	chr1	2152751	2153450	+	0	NA	intron (NR_146911, intron 6 of 15)	L1MB5|LINE|L1	30775	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
126781	chr2	30261351	30261450	+	0	NA	Intergenic	L1PA8|LINE|L1	29866	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
175086	chr4	54103171	54104200	+	0	NA	Intergenic	Intergenic	3522	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
30545	chr10	79608771	79608950	+	0	NA	Intergenic	Zaphod3|DNA|hAT-Tip100	-2079	NM_001093770	653509		NM_005411	ENSG00000122852	SFTPA1	COLEC4|ILD1|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SP-A1 beta|SP-A1 delta|SP-A1 epsilon|SP-A1 gamma|SPA|SPA1	surfactant protein A1	protein-coding
26604	chr10	22259251	22259930	+	0	NA	Intergenic	Intergenic	7518	NR_038921	100130992		NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
237592	chrX	123862701	123862900	+	0	NA	intron (NM_001378590, intron 1 of 6)	AluSq2|SINE|Alu	2350	NM_001378590	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
125237	chr2	10385101	10385300	+	0	NA	intron (NM_001258359, intron 1 of 4)	intron (NM_001258359, intron 1 of 4)	16436	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
195130	chr6	35674621	35675050	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	-10046	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
166315	chr3	112695771	112695930	+	0	NA	Intergenic	Intergenic	-41239	NR_162092	113218483		NR_162092		MIR9900	-	microRNA 9900	ncRNA
87073	chr16	68382321	68382680	+	0	NA	intron (NM_018667, intron 2 of 8)	intron (NM_018667, intron 2 of 8)	66008	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
71742	chr15	20638971	20639880	+	0	NA	Intergenic	Intergenic	77076	NR_027411	729786		NR_027411	ENSG00000181984	GOLGA8CP	GOLGA8C	golgin A8 family member C, pseudogene	pseudo
43992	chr11	94370771	94370930	+	0	NA	Intergenic	L1PA4|LINE|L1	30569	NM_016540	10888		NM_016540	ENSG00000123901	GPR83	GIR|GPR72	G protein-coupled receptor 83	protein-coding
57365	chr12	121786001	121786700	+	0	NA	intron (NM_019034, intron 2 of 4)	AluSx|SINE|Alu	7338	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
173775	chr4	17511621	17512730	+	0	NA	promoter-TSS (NM_001306140)	promoter-TSS (NM_001306140)	59	NM_001306140	5860		NM_000320	ENSG00000151552	QDPR	DHPR|HDHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
15950	chr1	151834271	151835200	+	0	NA	Intergenic	Intergenic	-2933	NM_005060	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
43823	chr11	86798601	86798800	+	0	NA	intron (NM_001293180, intron 1 of 1)	Charlie29a|DNA|hAT-Charlie	-1842	NR_120593	11098		NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	serine protease 23	protein-coding
87286	chr16	70043601	70043800	+	0	NA	intron (NR_003610, intron 1 of 25)	intron (NR_003610, intron 1 of 25)	13354	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
19896	chr1	183873801	183874030	+	0	NA	intron (NM_015149, intron 5 of 18)	intron (NM_015149, intron 5 of 18)	68795	NM_001297671	23179		NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
68251	chr14	77008171	77008350	+	0	NA	Intergenic	Intergenic	20448	NM_024496	64207		NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1|NEDAMSS	interferon regulatory factor 2 binding protein like	protein-coding
198868	chr6	109445101	109445680	+	0	NA	intron (NM_022765, intron 21 of 24)	intron (NM_022765, intron 21 of 24)	-4219	NM_001111298	285755		NM_173672	ENSG00000185250	PPIL6	PPIase|RSPH12|bA425D10.6|dJ919F19.1	peptidylprolyl isomerase like 6	protein-coding
149827	chr21	35024301	35024800	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	14876	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
55045	chr12	96398551	96399900	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	1214	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
34257	chr10	131590871	131591030	+	0	NA	Intergenic	Intergenic	199249	NR_038365	399827		NM_001001677	ENSG00000189275	LINC01164	-	long intergenic non-protein coding RNA 1164	ncRNA
86483	chr16	66989601	66990300	+	0	NA	intron (NM_173815, intron 1 of 11)	L1ME3|LINE|L1	1361	NM_001364782	283848		NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
38782	chr11	47191801	47192180	+	0	NA	Intergenic	AluJb|SINE|Alu	-5556	NM_001184974	29763		NM_016223	ENSG00000165912	PACSIN3	SDPIII	protein kinase C and casein kinase substrate in neurons 3	protein-coding
70293	chr14	101767951	101768350	+	0	NA	intron (NM_001352915, intron 2 of 14)	MER20|DNA|hAT-Charlie	5780	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
57390	chr12	121817121	121817880	+	0	NA	exon (NM_001353345, exon 9 of 17)	exon (NM_001353345, exon 9 of 17)	13491	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
60097	chr13	36438701	36438900	+	0	NA	exon (NM_001111046, exon 5 of 9)	exon (NM_001111046, exon 5 of 9)	6305	NM_003914	8900		NM_003914	ENSG00000133101	CCNA1	CT146	cyclin A1	protein-coding
82270	chr16	15150951	15151830	+	0	NA	Intergenic	AluSc5|SINE|Alu	3612	NR_037466	100500852		NR_037466	ENSG00000264115	MIR3180-4	mir-3180-4	microRNA 3180-4	ncRNA
83964	chr16	29158951	29159250	+	0	NA	Intergenic	Intergenic	84258	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
159320	chr3	13017571	13018450	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-30909	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
196509	chr6	43672251	43672850	+	0	NA	TTS (NM_152732)	TTS (NM_152732)	15241	NM_018135	55168		NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a|mL66	mitochondrial ribosomal protein S18A	protein-coding
99980	chr17	57606451	57606750	+	0	NA	intron (NR_110807, intron 1 of 2)	L2b|LINE|L2	1812	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
124290	chr19	57848351	57848780	+	0	NA	Intergenic	AluSp|SINE|Alu	-1294	NM_032828	84914		NM_017961	ENSG00000198466	ZNF587	ZF6	zinc finger protein 587	protein-coding
232792	chr9	136702951	136703980	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	-9107	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
169953	chr3	179120171	179120930	+	0	NA	intron (NR_125401, intron 2 of 2)	SVA_F|Retroposon|SVA	27423	NR_125401	101928739		NR_125401	ENSG00000229102	PIK3CA-DT	-	PIK3CA divergent transcript	ncRNA
211144	chr7	102546951	102547500	+	0	NA	intron (NM_001097615, intron 4 of 8)	AluJr|SINE|Alu	-2437	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
170108	chr3	183162401	183163530	+	0	NA	promoter-TSS (NM_014398)	promoter-TSS (NM_014398)	-231	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
194197	chr6	32152651	32152750	+	0	NA	promoter-TSS (NM_138717).7	promoter-TSS (NM_138717).7	383	NM_001363780	80863		NM_030651	ENSG00000204314	PRRT1	C6orf31|DSPD1|IFITMD7|NG5|SynDIG4	proline rich transmembrane protein 1	protein-coding
83098	chr16	22449551	22449930	+	0	NA	intron (NR_027154, intron 1 of 28)	AluSx1|SINE|Alu	-12025	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
152961	chr22	23012001	23012480	+	0	NA	Intergenic	Intergenic	-58279	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
122138	chr19	48861701	48861900	+	0	NA	intron (NM_020904, intron 3 of 19)	intron (NM_020904, intron 3 of 19)	6817	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
82750	chr16	21415021	21415280	+	0	NA	intron (NM_130464, intron 2 of 12)	intron (NM_130464, intron 2 of 12)	10228	NM_130464	23117		NM_130464		NPIPB3	KIAA0220L|NPIP|NPIPB|NPIPB5|NPIPL3	nuclear pore complex interacting protein family member B3	protein-coding
142960	chr20	19661751	19662080	+	0	NA	intron (NM_020689, intron 7 of 16)	intron (NM_020689, intron 7 of 16)	-96343	NM_001378238	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
49934	chr12	39711621	39712150	+	0	NA	intron (NR_135051, intron 11 of 18)	(TA)n|Simple_repeat|Simple_repeat	85702	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
189777	chr5	176658951	176659780	+	0	NA	TTS (NM_012171)	TTS (NM_012171)	11881	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
171795	chr4	495601	495800	+	0	NA	intron (NM_133474, intron 1 of 2)	AluY|SINE|Alu	3456	NM_133474	170960		NM_133474	ENSG00000182903	ZNF721	-	zinc finger protein 721	protein-coding
63638	chr14	20781921	20782630	+	0	NA	3' UTR (NM_005615, exon 2 of 2)	3' UTR (NM_005615, exon 2 of 2)	1007	NM_005615	6039		NM_005615	ENSG00000169413	RNASE6	RAD1|RNS6|RNasek6	ribonuclease A family member k6	protein-coding
169603	chr3	171184501	171185100	+	0	NA	intron (NM_001161560, intron 7 of 31)	intron (NM_001161560, intron 7 of 31)	-78041	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
186029	chr5	134003811	134006100	+	0	NA	promoter-TSS (NR_036624)	promoter-TSS (NR_036624)	20	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
217175	chr8	26303851	26303950	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	10684	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
34777	chr11	210651	210750	+	0	NA	intron (NM_001286134, intron 4 of 9)	intron (NM_001286134, intron 4 of 9)	1364	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
96613	chr17	40553371	40554650	+	0	NA	3' UTR (NM_001301716, exon 3 of 3)	3' UTR (NM_001301716, exon 3 of 3)	6384	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
155758	chr22	39221271	39221630	+	0	NA	Intergenic	Intergenic	19459	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
149321	chr21	29028101	29028930	+	0	NA	intron (NM_006447, intron 2 of 17)	AluSz|SINE|Alu	3847	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
68771	chr14	91109101	91109900	+	0	NA	intron (NM_001358312, intron 1 of 13)	intron (NM_001358312, intron 1 of 13)	-4513	NM_001102366	80017		NM_024952	ENSG00000133943	DGLUCY	C14orf159	D-glutamate cyclase	protein-coding
144782	chr20	36632651	36632850	+	0	NA	intron (NM_175077, intron 4 of 7)	MIR3|SINE|MIR	13446	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
121691	chr19	47539001	47539200	+	0	NA	intron (NM_001277075, intron 8 of 16)	L2b|LINE|L2	-24037	NR_038456	8775		NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding
234821	chrX	24156701	24157130	+	0	NA	intron (NM_001330327, intron 3 of 10)	AluY|SINE|Alu	7186	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
129152	chr2	65600671	65600980	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-168226	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
222409	chr8	134336351	134336450	+	0	NA	Intergenic	Intergenic	-261671	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
213926	chr7	142608201	142608600	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-57899	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
152855	chr22	22223171	22223530	+	0	NA	Intergenic	CpG	-21436	NM_001303509	7441		NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	V-set pre-B cell surrogate light chain 1	protein-coding
158984	chr3	10266551	10266850	+	0	NA	intron (NM_014760, intron 3 of 7)	MER58A|DNA|hAT-Charlie	-13651	NR_162141	113219470		NR_162141		MIR12127	-	microRNA 12127	ncRNA
48523	chr12	10139921	10140300	+	0	NA	Intergenic	Intergenic	-9911	NR_125336	64581		NM_022570	ENSG00000172243	CLEC7A	BGR|CANDF4|CD369|CLECSF12|DECTIN1|SCARE2	C-type lectin domain containing 7A	protein-coding
45506	chr11	118666301	118666500	+	0	NA	intron (NM_007180, intron 1 of 14)	MER21-int|LTR|ERVL	13250	NM_007180	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
214873	chr7	151395651	151396150	+	0	NA	exon (NM_001284262, exon 3 of 6)	exon (NM_001284262, exon 3 of 6)	-13261	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
75807	chr15	69031551	69031880	+	0	NA	exon (NM_001184780, exon 4 of 16)	exon (NM_001184780, exon 4 of 16)	17020	NM_024505	79400		NM_024505	ENSG00000290203	NOX5	-	NADPH oxidase 5	protein-coding
8772	chr1	42766201	42768000	+	0	NA	promoter-TSS (NM_001243246)	promoter-TSS (NM_001243246)	-72	NM_001243246	64175		NM_022356	ENSG00000117385	P3H1	GROS1|LEPRE1|OI8	prolyl 3-hydroxylase 1	protein-coding
111994	chr19	4918951	4919250	+	0	NA	intron (NM_013282, intron 1 of 15)	AluJb|SINE|Alu	8733	NM_013282	29128		NM_013282	ENSG00000276043	UHRF1	ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95	ubiquitin like with PHD and ring finger domains 1	protein-coding
151914	chr22	19022671	19023930	+	0	NA	non-coding (NR_026651, exon 1 of 1)	non-coding (NR_026651, exon 1 of 1)	676	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
88407	chr16	84651571	84651930	+	0	NA	intron (NM_024731, intron 2 of 4)	MER106A|DNA|hAT-Charlie	3239	NM_024731	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
225807	chr9	37591751	37593180	+	0	NA	exon (NM_001134485, exon 1 of 2)	exon (NM_001134485, exon 1 of 2)	132	NM_001001790	401505		NM_001001790	ENSG00000175768	TOMM5	C9orf105|Tom5|bA613M10.3	translocase of outer mitochondrial membrane 5	protein-coding
10106	chr1	59005271	59006080	+	0	NA	Intergenic	Intergenic	-14801	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
169704	chr3	172102051	172102930	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	61959	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
236157	chrX	63839051	63839150	+	0	NA	Intergenic	L1PA3|LINE|L1	-53013	NR_031567	100302115		NR_031567	ENSG00000222532	MIR1468	MIRN1468|hsa-mir-1468|mir-1468	microRNA 1468	ncRNA
106159	chr18	9920571	9921430	+	0	NA	intron (NM_194434, intron 1 of 5)	L2c|LINE|L2	6984	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
203842	chr7	1446871	1447930	+	0	NA	intron (NM_182924, intron 4 of 16)	intron (NM_182924, intron 4 of 16)	12070	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
100321	chr17	59839001	59839730	+	0	NA	intron (NM_030938, intron 11 of 11)	intron (NM_030938, intron 11 of 11)	-1901	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
107749	chr18	50297771	50299380	+	0	NA	Intergenic	Intergenic	-10253	NM_001101654	30827		NM_014593	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
237747	chrX	129606971	129607430	+	0	NA	Intergenic	Intergenic	47756	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
68948	chr14	91397001	91398300	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	20170	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
220405	chr8	100260801	100261480	+	0	NA	intron (NM_183419, intron 8 of 9)	AluJo|SINE|Alu	41053	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
207623	chr7	45001051	45002430	+	0	NA	intron (NM_001167934, intron 1 of 8)	intron (NM_001167934, intron 1 of 8)	1539	NM_001363459	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
131432	chr2	96295551	96295850	+	0	NA	intron (NM_014014, intron 13 of 44)	intron (NM_014014, intron 13 of 44)	9846	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
52223	chr12	54387571	54388330	+	0	NA	intron (NM_001130968, intron 1 of 6)	intron (NM_001130968, intron 1 of 6)	-2171	NM_001290002	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
1102	chr1	2042701	2043300	+	0	NA	Intergenic	Intergenic	7070	NR_135509	105378591		NR_135509	ENSG00000226969	PRKCZ-DT	-	PRKCZ divergent transcript	ncRNA
127272	chr2	38717071	38718350	+	0	NA	intron (NM_138801, intron 4 of 6)	MIR1_Amn|SINE|MIR	33651	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
150859	chr21	44085451	44085800	+	0	NA	intron (NM_003274, intron 15 of 22)	AluJr|SINE|Alu	11301	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
225586	chr9	36127571	36128250	+	0	NA	Intergenic	LTR33|LTR|ERVL	-8626	NR_104638	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
142648	chr20	5786921	5787300	+	0	NA	intron (NM_001303477, intron 3 of 3)	MER39B|LTR|ERV1	36709	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
192018	chr6	16420401	16422050	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	182638	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
87495	chr16	71805201	71805400	+	0	NA	intron (NM_001128, intron 1 of 22)	AluSz|SINE|Alu	3534	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
28848	chr10	62608221	62608550	+	0	NA	Intergenic	L1PA2|LINE|L1	-196335	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
87801	chr16	75515221	75515480	+	0	NA	Intergenic	L1MC4|LINE|L1	-19909	NR_163480	4166		NM_021615	ENSG00000183196	CHST6	C-GlcNAc6ST|GST4-beta|MCDC1|glcNAc6ST-5|gn6st-5|hCGn6ST	carbohydrate sulfotransferase 6	protein-coding
178941	chr4	158949151	158949450	+	0	NA	intron (NM_152543, intron 3 of 4)	MER94|DNA|hAT-Blackjack	85929	NM_152543	152940		NM_152543	ENSG00000164123	SPMIP2	C4orf45	sperm microtubule inner protein 2	protein-coding
76221	chr15	73925701	73925900	+	0	NA	promoter-TSS (NM_005576)	promoter-TSS (NM_005576)	-662	NM_005576	4016		NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase like 1	protein-coding
119471	chr19	40438051	40438350	+	0	NA	Intergenic	AluSx|SINE|Alu	4398	NM_013368	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
154357	chr22	32904071	32904230	+	0	NA	intron (NM_133633, intron 3 of 11)	MLT1J2|LTR|ERVL-MaLR	102445	NM_000362	7078		NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
28141	chr10	43441321	43442500	+	0	NA	intron (NM_001355444, intron 1 of 3)	L1MEc|LINE|L1	4799	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
111129	chr19	3269271	3269630	+	0	NA	intron (NM_021938, intron 2 of 12)	AluSq2|SINE|Alu	44172	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
87108	chr16	68607601	68608000	+	0	NA	Intergenic	AluJb|SINE|Alu	-37510	NM_001317196	1001		NM_001793	ENSG00000062038	CDH3	CDHP|HJMD|PCAD	cadherin 3	protein-coding
54762	chr12	94102101	94103080	+	0	NA	Intergenic	Intergenic	-45987	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
57020	chr12	120645871	120646030	+	0	NA	intron (NM_001033677, intron 1 of 5)	AluJo|SINE|Alu	-4327	NM_004276	9478		NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
210077	chr7	96702801	96703000	+	0	NA	intron (NR_163953, intron 1 of 5)	L1MC4|LINE|L1	6946	NR_163952	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
125169	chr2	10047121	10048030	+	0	NA	intron (NM_001177718, intron 2 of 3)	intron (NM_001177718, intron 2 of 3)	3330	NM_001177718	8462		NM_003597	ENSG00000172059	KLF11	FKLF|FKLF1|MODY7|TIEG2|Tieg3	KLF transcription factor 11	protein-coding
60327	chr13	40665501	40666000	+	0	NA	exon (NM_002015, exon 1 of 3)	exon (NM_002015, exon 1 of 3)	891	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
36411	chr11	4089551	4090880	+	0	NA	intron (NM_001277962, intron 12 of 12)	MIRc|SINE|MIR	-4470	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
139423	chr2	222789321	222790150	+	0	NA	Intergenic	LTR81B|LTR|Gypsy	-71301	NM_203372	2181		NM_004457	ENSG00000123983	ACSL3	ACS3|FACL3|LACS 3|LACS3|PRO2194	acyl-CoA synthetase long chain family member 3	protein-coding
87460	chr16	71441471	71441730	+	0	NA	intron (NM_001367365, intron 1 of 9)	CpG	454	NM_001367365	102723796		NM_001367365	ENSG00000260734	TLE7	chico	TLE family member 7	protein-coding
159577	chr3	15051551	15052280	+	0	NA	non-coding (NR_135247, exon 4 of 5)	non-coding (NR_135247, exon 4 of 5)	13400	NR_135247	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
5205	chr1	24968121	24968830	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	-3465	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
11253	chr1	89001851	89002450	+	0	NA	Intergenic	L1PBa1|LINE|L1	-9190	NR_146184	56267		NM_001008661	ENSG00000137944	KYAT3	CCBL2|KAT3|KATIII	kynurenine aminotransferase 3	protein-coding
35282	chr11	940401	940800	+	0	NA	intron (NR_144509, intron 1 of 20)	HAL1|LINE|L1	14730	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
199185	chr6	111769321	111770050	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-9768	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
180916	chr5	34305201	34305550	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-60651	NR_146599	114899		NM_030945	ENSG00000082196	C1QTNF3	C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3	C1q and TNF related 3	protein-coding
91389	chr17	4584051	4584950	+	0	NA	promoter-TSS (NM_001114974)	promoter-TSS (NM_001114974)	-29	NM_001114974	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
95381	chr17	35887851	35888150	+	0	NA	Intergenic	AluSz|SINE|Alu	-7640	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
41648	chr11	66534371	66534730	+	0	NA	TTS (NM_024649)	TTS (NM_024649)	11498	NM_001348571	254359		NM_207340	ENSG00000174165	ZDHHC24	-	zinc finger DHHC-type containing 24	protein-coding
61759	chr13	74257651	74258350	+	0	NA	non-coding (NR_144451, exon 2 of 2)	non-coding (NR_144451, exon 2 of 2)	26556	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
185558	chr5	131370571	131371100	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	106782	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
65751	chr14	53306201	53306430	+	0	NA	Intergenic	Intergenic	152961	NR_110062	101927620		NR_110062	ENSG00000258731	DDHD1-DT	-	DDHD1 divergent transcript	ncRNA
207724	chr7	47980801	47981430	+	0	NA	Intergenic	L1PA6|LINE|L1	-1500	NR_037917	3364		NM_004507	ENSG00000136273	HUS1	hHUS1	HUS1 checkpoint clamp component	protein-coding
110274	chr19	1816471	1817050	+	0	NA	promoter-TSS (NR_031730)	promoter-TSS (NR_031730)	-522	NR_031730	100302210		NR_031730	ENSG00000284216	MIR1909	MIRN1909|hsa-mir-1909|mir-1909	microRNA 1909	ncRNA
102576	chr17	75874301	75874500	+	0	NA	3' UTR (NM_033452, exon 6 of 6)	3' UTR (NM_033452, exon 6 of 6)	4181	NM_033452	91107		NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding
72218	chr15	30185421	30185680	+	0	NA	Intergenic	Intergenic	-10486	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
93124	chr17	17714671	17714830	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	33292	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
186323	chr5	134626201	134626400	+	0	NA	intron (NM_016103, intron 1 of 6)	AluSx|SINE|Alu	6528	NM_016103	51128		NM_016103	ENSG00000152700	SAR1B	ANDD|CMRD|GTBPB|SARA2	secretion associated Ras related GTPase 1B	protein-coding
27313	chr10	30493021	30494350	+	0	NA	Intergenic	Intergenic	59039	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
7035	chr1	31930951	31931280	+	0	NA	5' UTR (NM_001369859, exon 2 of 7)	5' UTR (NM_001369859, exon 2 of 7)	6703	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
194222	chr6	32201301	32201900	+	0	NA	intron (NR_134950, intron 20 of 28).2	intron (NR_134950, intron 20 of 28).2	-6077	NM_022107	63940		NM_022107	ENSG00000213654	GPSM3	AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1	G protein signaling modulator 3	protein-coding
186247	chr5	134435671	134435830	+	0	NA	promoter-TSS (NR_105044)	promoter-TSS (NR_105044)	-703	NR_105044	102546229		NR_105044		LINC02999	-	long intergenic non-protein coding RNA 2999	ncRNA
145456	chr20	43665021	43665280	+	0	NA	Intergenic	Intergenic	-1869	NM_001278610	4605		NM_002466	ENSG00000101057	MYBL2	B-MYB|BMYB	MYB proto-oncogene like 2	protein-coding
32428	chr10	102500451	102500550	+	0	NA	intron (NM_005736, intron 1 of 10)	AluYf1|SINE|Alu	2212	NM_005736	10121		NM_005736	ENSG00000138107	ACTR1A	ARP1|Arp1A|CTRN1	actin related protein 1A	protein-coding
219255	chr8	67313601	67313950	+	0	NA	intron (NM_006421, intron 1 of 38)	L1PBa1|LINE|L1	30006	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
175534	chr4	74505671	74505830	+	0	NA	Intergenic	L1PA6|LINE|L1	60614	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
15452	chr1	150323371	150324000	+	0	NA	intron (NR_146768, intron 1 of 15)	intron (NR_146768, intron 1 of 15)	2152	NM_004698	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
31483	chr10	96585401	96586100	+	0	NA	intron (NM_020123, intron 1 of 14)	intron (NM_020123, intron 1 of 14)	1262	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
2664	chr1	10497021	10497530	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	22325	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
43490	chr11	78415371	78415730	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	2270	NM_080491	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
216639	chr8	22112771	22113130	+	0	NA	Intergenic	Intergenic	-3531	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
222224	chr8	133077101	133077430	+	0	NA	intron (NM_001045556, intron 1 of 8)	intron (NM_001045556, intron 1 of 8)	-16911	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
89612	chr16	89302671	89303430	+	0	NA	intron (NR_045839, intron 5 of 9)	intron (NR_045839, intron 5 of 9)	6922	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
140309	chr2	232485821	232486080	+	0	NA	exon (NM_004826, exon 2 of 18)	exon (NM_004826, exon 2 of 18)	1884	NM_001290787	9427		NM_004826	ENSG00000171551	ECEL1	DA5D|DINE|ECEX|XCE	endothelin converting enzyme like 1	protein-coding
225782	chr9	37467521	37467780	+	0	NA	Intergenic	AluSg|SINE|Alu	-2200	NM_014872	9925		NM_014872	ENSG00000168795	ZBTB5	-	zinc finger and BTB domain containing 5	protein-coding
49770	chr12	31806071	31806230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-13852	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
85843	chr16	57012421	57012780	+	0	NA	intron (NR_169520, intron 1 of 47)	MER1B|DNA|hAT-Charlie	23043	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
198847	chr6	109363371	109364350	+	0	NA	Intergenic	Intergenic	17879	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
111272	chr19	3544851	3546300	+	0	NA	intron (NM_174983, intron 8 of 9)	L2b|LINE|L2	6418	NM_001135580	100128569		NM_001135580	ENSG00000183397	TEKTIP1	C19orf71	tektin bundle interacting protein 1	protein-coding
205663	chr7	22884971	22885330	+	0	NA	Intergenic	Intergenic	28537	NR_003075	692210		NR_003075	ENSG00000221740	SNORD93	HBII-336	small nucleolar RNA, C/D box 93	snoRNA
78443	chr15	92818571	92818950	+	0	NA	Intergenic	Intergenic	23276	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
118973	chr19	38868851	38871630	+	0	NA	exon (NM_198445, exon 9 of 12).2	exon (NM_198445, exon 9 of 12).2	8035	NM_198445	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
127129	chr2	37662271	37662430	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	9292	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
179443	chr4	184410771	184411100	+	0	NA	intron (NM_002199, intron 5 of 8)	MIRc|SINE|MIR	-28629	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
43465	chr11	78138001	78138200	+	0	NA	intron (NM_024079, intron 1 of 12)	AluSz|SINE|Alu	1526	NM_024079	79053		NM_024079	ENSG00000159063	ALG8	CDG1H|PCLD3	ALG8 alpha-1,3-glucosyltransferase	protein-coding
210393	chr7	99917851	99918150	+	0	NA	intron (NM_033017, intron 1 of 6)	intron (NM_033017, intron 1 of 6)	1530	NM_033091	89122		NM_033017	ENSG00000146833	TRIM4	RNF87	tripartite motif containing 4	protein-coding
54566	chr12	92332621	92332880	+	0	NA	Intergenic	Intergenic	-88781	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
94919	chr17	31912771	31913000	+	0	NA	Intergenic	Intergenic	-11177	NM_018428	55813		NM_018428	ENSG00000108651	UTP6	C17orf40|HCA66	UTP6 small subunit processome component	protein-coding
178675	chr4	152514101	152514500	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	20733	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
139231	chr2	219300151	219300450	+	0	NA	intron (NM_001199763, intron 8 of 21)	intron (NM_001199763, intron 8 of 21)	-6100	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
212095	chr7	116123001	116123230	+	0	NA	Intergenic	Intergenic	-87424	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
171478	chr3	196503401	196505280	+	0	NA	promoter-TSS (NM_152617)	promoter-TSS (NM_152617)	-572	NM_152617	165918		NM_152617	ENSG00000163961	RNF168	RIDL|hRNF168	ring finger protein 168	protein-coding
15234	chr1	149582551	149582900	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-1098	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
144807	chr20	36733151	36734300	+	0	NA	intron (NR_038370, intron 1 of 13)	intron (NR_038370, intron 1 of 13)	12365	NM_022477	57446		NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
34531	chr10	132836851	132837150	+	0	NA	intron (NM_001200049, intron 44 of 57)	intron (NM_001200049, intron 44 of 57)	-50853	NM_177400	84504		NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B|SPAX8	NK6 homeobox 2	protein-coding
138921	chr2	218214621	218214880	+	0	NA	Intergenic	HAL1|LINE|L1	-2439	NM_152862	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
27126	chr10	28177621	28178530	+	0	NA	intron (NR_134518, intron 2 of 16)	MER20|DNA|hAT-Charlie	104048	NM_173496	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
68537	chr14	89240521	89240980	+	0	NA	intron (NM_001085471, intron 4 of 6)	L1ME4b|LINE|L1	176483	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
30810	chr10	84835621	84835700	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	363245	NR_120668	101929624		NR_120667	ENSG00000237267	LINC01519	-	long intergenic non-protein coding RNA 1519	ncRNA
57875	chr12	123391021	123391280	+	0	NA	promoter-TSS (NM_001324506)	promoter-TSS (NM_001324506)	-125	NM_001324506	387893		NM_020382	ENSG00000183955	KMT5A	PR-Set7|PR/SET07|SET07|SET8|SETD8	lysine methyltransferase 5A	protein-coding
205764	chr7	23520301	23521180	+	0	NA	intron (NM_013293, intron 2 of 7)	AluSx1|SINE|Alu	11241	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
35966	chr11	2841571	2841730	+	0	NA	intron (NR_130721, intron 2 of 2)	intron (NR_130721, intron 2 of 2)	19919	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
62159	chr13	97224871	97226180	+	0	NA	intron (NM_001382682, intron 1 of 7)	intron (NM_001382682, intron 1 of 7)	3192	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
8321	chr1	40157571	40157730	+	0	NA	Intergenic	L2a|LINE|L2	-3737	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
239307	chrY	16427371	16427630	+	0	NA	Intergenic	L1PA3|LINE|L1	-1073458	NR_028083	340618		NR_028083		FAM41AY1	FAM41AY	family with sequence similarity 41 member A, Y-linked 1	ncRNA
130434	chr2	85406871	85407450	+	0	NA	intron (NM_001256139, intron 1 of 9)	AluSz|SINE|Alu	2672	NM_001320732	822		NM_001747	ENSG00000042493	CAPG	AFCP|HEL-S-66|MCP	capping actin protein, gelsolin like	protein-coding
109309	chr19	576251	576430	+	0	NA	intron (NM_001322243, intron 1 of 7)	intron (NM_001322243, intron 1 of 7)	3744	NM_198589	682		NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|EMPRIN|HAb18G|OK|TCSF	basigin (Ok blood group)	protein-coding
232568	chr9	136367121	136367830	+	0	NA	intron (NM_052813, intron 8 of 12)	intron (NM_052813, intron 8 of 12)	-3731	NR_073565	728489		NM_001080849	ENSG00000213221	DNLZ	C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2	DNL-type zinc finger	protein-coding
194179	chr6	32116251	32116350	+	0	NA	intron (NM_001136153, intron 17 of 17).4	intron (NM_001136153, intron 17 of 17).4	-6962	NM_001365276	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
39855	chr11	62393021	62393680	+	0	NA	TTS (NM_025080)	TTS (NM_025080)	-25683	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
80838	chr16	3491771	3492230	+	0	NA	Intergenic	AluY|SINE|Alu	3489	NM_001080524	646174		NM_001080524	ENSG00000215131	C16orf90	-	chromosome 16 open reading frame 90	protein-coding
55931	chr12	109888151	109889480	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-8274	NM_016433	51228		NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding
51939	chr12	53737271	53737780	+	0	NA	Intergenic	Intergenic	-10073	NM_001143682	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
128771	chr2	62213251	62214000	+	0	NA	intron (NM_006577, intron 1 of 1)	intron (NM_006577, intron 1 of 1)	-1896	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
50773	chr12	49031751	49032430	+	0	NA	exon (NM_003482, exon 40 of 55)	exon (NM_003482, exon 40 of 55)	-13314	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
167344	chr3	128756101	128756300	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSg|SINE|Alu	30017	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
102772	chr17	76291271	76291430	+	0	NA	exon (NM_032134, exon 4 of 19)	exon (NM_032134, exon 4 of 19)	16330	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
40654	chr11	64737701	64737930	+	0	NA	intron (NM_001098670, intron 8 of 16)	AluSx|SINE|Alu	6327	NM_001098671	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
189799	chr5	176818321	176819050	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	8126	NM_133369	90249		NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding
126302	chr2	27255151	27255450	+	0	NA	3' UTR (NM_001318951, exon 8 of 8)	3' UTR (NM_001318951, exon 8 of 8)	7747	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
122027	chr19	48622421	48622850	+	0	NA	intron (NM_001243876, intron 2 of 5)	intron (NM_001243876, intron 2 of 5)	-2394	NM_001204160	56848		NM_020126	ENSG00000063176	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding
120245	chr19	42399071	42399880	+	0	NA	intron (NR_073180, intron 1 of 2)	intron (NR_073180, intron 1 of 2)	2327	NR_073180	100996307		NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
90019	chr16	89892971	89893380	+	0	NA	intron (NM_014972, intron 6 of 17)	intron (NM_014972, intron 6 of 17)	19583	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
80131	chr16	2065171	2065930	+	0	NA	exon (NM_021055, exon 16 of 41)	exon (NM_021055, exon 16 of 41)	17348	NM_001318832	7249		NM_000548	ENSG00000103197	TSC2	LAM|PPP1R160|TSC4	TSC complex subunit 2	protein-coding
97122	chr17	42529721	42530880	+	0	NA	Intergenic	Intergenic	-5941	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
161840	chr3	45691571	45692130	+	0	NA	intron (NM_001319073, intron 2 of 20)	intron (NM_001319073, intron 2 of 20)	2454	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
51288	chr12	51236501	51236900	+	0	NA	Intergenic	L2b|LINE|L2	-2024	NM_001136264	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
215211	chr7	155995071	155995630	+	0	NA	Intergenic	MIR|SINE|MIR	32793	NR_168379	389602		NM_001291913	ENSG00000204876	LOC389602	-	uncharacterized LOC389602	ncRNA
161375	chr3	40959451	40959550	+	0	NA	Intergenic	L1PA3|LINE|L1	-240005	NM_001330729	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
5039	chr1	24527051	24527400	+	0	NA	intron (NM_001251985, intron 1 of 1)	AluSx3|SINE|Alu	12911	NM_001251982	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
3140	chr1	12474251	12474550	+	0	NA	intron (NM_018156, intron 66 of 68)	intron (NM_018156, intron 66 of 68)	-32846	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
227144	chr9	86286951	86287250	+	0	NA	TTS (NM_001185059)	TTS (NM_001185059)	-4562	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
95689	chr17	38422701	38423050	+	0	NA	Intergenic	Intergenic	-5589	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
17836	chr1	159909821	159911470	+	0	NA	Intergenic	Intergenic	-10480	NM_012337	25790		NM_012337	ENSG00000213085	CFAP45	CCDC19|HTX11|NESG1	cilia and flagella associated protein 45	protein-coding
91681	chr17	5585951	5586580	+	0	NA	Intergenic	MER21C|LTR|ERVL	-1756	NM_014922	22861		NM_014922	ENSG00000091592	NLRP1	AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|JRRP|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
119519	chr19	40541221	40541550	+	0	NA	intron (NM_025213, intron 3 of 9)	intron (NM_025213, intron 3 of 9)	10894	NM_025213	57731		NM_020971	ENSG00000160460	SPTBN4	CMND|NEDHND|QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding
159599	chr3	15179871	15180030	+	0	NA	intron (NR_027927, intron 1 of 4)	intron (NR_027927, intron 1 of 4)	26009	NR_027927	344875		NR_027927	ENSG00000291281	COL6A4P1	COL6A4|COL6A4P|DIVA|DVWA|FAME3|VWA6	collagen type VI alpha 4 pseudogene 1	pseudo
230410	chr9	128117301	128118150	+	0	NA	non-coding (NR_033374, exon 2 of 5)	non-coding (NR_033374, exon 2 of 5)	1009	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
45348	chr11	118238821	118239200	+	0	NA	intron (NM_001286152, intron 2 of 5)	intron (NM_001286152, intron 2 of 5)	13355	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
69673	chr14	98134851	98135150	+	0	NA	Intergenic	Intergenic	-156876	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
109003	chr18	79704151	79704630	+	0	NA	intron (NM_001318511, intron 4 of 11)	CpG	22960	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
232596	chr9	136422871	136423030	+	0	NA	intron (NM_015160, intron 12 of 12)	intron (NM_015160, intron 12 of 12)	12292	NM_015160	23203		NM_015160	ENSG00000165688	PMPCA	Alpha-MPP|CLA1|CPD3|INPP5E|MAS2|P-55|SCAR2	peptidase, mitochondrial processing subunit alpha	protein-coding
226754	chr9	76393771	76395160	+	0	NA	promoter-TSS (NM_018339)	promoter-TSS (NM_018339)	-39	NM_018339	55312		NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
168451	chr3	142963101	142964050	+	0	NA	promoter-TSS (NM_198504)	promoter-TSS (NM_198504)	99	NM_198504	344838		NM_198504	ENSG00000188582	PAQR9	BLNC1	progestin and adipoQ receptor family member 9	protein-coding
216701	chr8	22196621	22197600	+	0	NA	intron (NR_033404, intron 14 of 15)	intron (NR_033404, intron 14 of 15)	31738	NR_033403	649		NM_001199	ENSG00000168487	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
59330	chr13	24509651	24509950	+	0	NA	intron (NM_006437, intron 1 of 33)	AluSz|SINE|Alu	2978	NM_006437	143		NM_006437	ENSG00000102699	PARP4	ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193	poly(ADP-ribose) polymerase family member 4	protein-coding
224456	chr9	15502201	15502450	+	0	NA	intron (NM_001317898, intron 3 of 10)	MER2|DNA|TcMar-Tigger	7964	NM_021144	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
221175	chr8	120444421	120445590	+	0	NA	promoter-TSS (NM_022045)	promoter-TSS (NM_022045)	145	NM_014078	28998		NM_014078	ENSG00000172172	MRPL13	L13|L13A|L13mt|RPL13|RPML13|uL13m	mitochondrial ribosomal protein L13	protein-coding
150912	chr21	44218451	44218750	+	0	NA	Intergenic	Intergenic	22343	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
110992	chr19	3033871	3034230	+	0	NA	intron (NM_001144761, intron 2 of 19)	L2b|LINE|L2	-4436	NM_001144762	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
86444	chr16	66921571	66922500	+	0	NA	3' UTR (NM_001128850, exon 5 of 5)	3' UTR (NM_001128850, exon 5 of 5)	-3150	NM_001204746	1014		NM_004062	ENSG00000166589	CDH16	-	cadherin 16	protein-coding
218372	chr8	43179551	43179650	+	0	NA	intron (NM_001363229, intron 9 of 16)	SVA_E|Retroposon|SVA	39136	NM_001363228	138050		NM_025070	ENSG00000165102	HGSNAT	HGNAT|MPS3C|RP73|TMEM76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding
47068	chr12	563301	564880	+	0	NA	TTS (NM_173593)	TTS (NM_173593)	22396	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
122249	chr19	49024151	49024250	+	0	NA	5' UTR (NM_000737, exon 1 of 3)	5' UTR (NM_000737, exon 1 of 3)	175	NM_000737	1082		NM_000737	ENSG00000104827	CGB3	CGB|CGB5|CGB7|CGB8|LHB|hCGB	chorionic gonadotropin subunit beta 3	protein-coding
7209	chr1	32291551	32292930	+	0	NA	intron (NM_004964, intron 1 of 13)	CpG	157	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
81150	chr16	4410421	4411250	+	0	NA	intron (NM_001351729, intron 3 of 27)	MER58A|DNA|hAT-Charlie	5062	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
150283	chr21	41895501	41896380	+	0	NA	intron (NM_015500, intron 13 of 13)	intron (NM_015500, intron 13 of 13)	-16596	NM_001282934	63977		NM_022115	ENSG00000141956	PRDM15	C21orf83|PFM15|ZNF298	PR/SET domain 15	protein-coding
105537	chr17	83172451	83173200	+	0	NA	Intergenic	Intergenic	-54072	NR_029406	388574		NR_029406	ENSG00000293087	RPL23AP87	-	ribosomal protein L23a pseudogene 87	pseudo
45702	chr11	119078101	119078300	+	0	NA	non-coding (NR_165448, exon 9 of 14)	non-coding (NR_165448, exon 9 of 14)	-6677	NM_001258209	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
144586	chr20	35789371	35789730	+	0	NA	intron (NM_016436, intron 1 of 17)	AluSx3|SINE|Alu	17535	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
235539	chrX	47234921	47235680	+	0	NA	intron (NM_001371072, intron 1 of 20)	intron (NM_001371072, intron 1 of 20)	2291	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
29260	chr10	69126271	69126700	+	0	NA	intron (NM_001318946, intron 1 of 7)	AluSg|SINE|Alu	2307	NM_001318944	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
16166	chr1	153775201	153777050	+	0	NA	exon (NM_024330, exon 1 of 10).2	exon (NM_024330, exon 1 of 10).2	718	NM_001317929	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
226653	chr9	74795901	74796130	+	0	NA	intron (NM_001177311, intron 18 of 38)	intron (NM_001177311, intron 18 of 38)	91332	NM_001177311	140803		NM_017662	ENSG00000119121	TRPM6	CHAK2|HMGX|HOMG|HOMG1|HSH	transient receptor potential cation channel subfamily M member 6	protein-coding
142305	chr20	3406471	3408300	+	0	NA	intron (NM_001009984, intron 1 of 36)	CpG	277	NM_001009984	25943		NM_001009984	ENSG00000088854	DNAAF9	C20orf194	dynein axonemal assembly factor 9	protein-coding
184615	chr5	106154671	106154850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	856254	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
9734	chr1	53219051	53219430	+	0	NA	TTS (NR_130897)	TTS (NR_130897)	1394	NM_017887	54987		NM_017887	ENSG00000162384	CZIB	C1orf123	CXXC motif containing zinc binding protein	protein-coding
46031	chr11	122663701	122664430	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	8343	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
24698	chr1	247316151	247316650	+	0	NA	intron (NM_032752, intron 6 of 9)	MSTC|LTR|ERVL-MaLR	15467	NM_032752	84838		NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding
117691	chr19	28466171	28466480	+	0	NA	intron (NR_110759, intron 6 of 9)	intron (NR_110759, intron 6 of 9)	-140363	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
210142	chr7	98228401	98229130	+	0	NA	intron (NM_015395, intron 16 of 25)	intron (NM_015395, intron 16 of 25)	17326	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
157611	chr22	46047421	46047880	+	0	NA	TTS (NR_165243)	TTS (NR_165243)	-2782	NR_027036	100271722		NR_027036		LINC00899	-	long intergenic non-protein coding RNA 899	ncRNA
198525	chr6	106529821	106530080	+	0	NA	intron (NM_001371242, intron 7 of 21)	intron (NM_001371242, intron 7 of 21)	18095	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
40333	chr11	63918721	63919350	+	0	NA	Intergenic	Intergenic	-1871	NM_173587	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
140003	chr2	230969201	230969600	+	0	NA	Intergenic	MER51A|LTR|ERV1	26632	NR_033879	348761		NR_033879	ENSG00000238062	SPATA3-AS1	-	SPATA3 antisense RNA 1 (head to head)	ncRNA
115381	chr19	15243151	15243650	+	0	NA	exon (NM_058243, exon 14 of 20)	exon (NM_058243, exon 14 of 20)	-10353	NM_001142886	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
33886	chr10	124456271	124456630	+	0	NA	Intergenic	Intergenic	-5373	NM_001167880	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
73519	chr15	43789921	43791050	+	0	NA	intron (NM_001199877, intron 2 of 4)	AluSx1|SINE|Alu	-1491	NR_037672	10169		NM_005770	ENSG00000140264	SERF2	4F5REL|FAM2C|H4F5REL|HsT17089	small EDRK-rich factor 2	protein-coding
184488	chr5	100852021	100852280	+	0	NA	intron (NM_005668, intron 4 of 4)	AluSx|SINE|Alu	-35585	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
197040	chr6	53348221	53350250	+	0	NA	promoter-TSS (NM_021814)	promoter-TSS (NM_021814)	-56	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
29295	chr10	69313171	69313330	+	0	NA	intron (NM_033500, intron 5 of 21)	MER102a|DNA|hAT-Charlie	-2604	NM_033496	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
226903	chr9	79439051	79439550	+	0	NA	Intergenic	L1PA3|LINE|L1	-132473	NM_001282749	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
18472	chr1	161613651	161613750	+	0	NA	Intergenic	Intergenic	7641	NR_024151	3311		NR_024151	ENSG00000225217	HSPA7	HSP70B	heat shock protein family A (Hsp70) member 7 (pseudogene)	pseudo
188005	chr5	149541721	149542430	+	0	NA	intron (NM_001892, intron 2 of 9)	MER1A|DNA|hAT-Charlie	8290	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
147610	chr20	62121271	62123980	+	0	NA	5' UTR (NM_144703, exon 1 of 9)	5' UTR (NM_144703, exon 1 of 9)	150	NM_144703	149986		NM_014054	ENSG00000149657	LSM14B	C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3	LSM family member 14B	protein-coding
9506	chr1	51296601	51297750	+	0	NA	intron (NM_001144832, intron 12 of 17)	intron (NM_001144832, intron 12 of 17)	786	NM_001297666	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
12008	chr1	95235551	95236000	+	0	NA	intron (NM_001199682, intron 1 of 3)	L2c|LINE|L2	1565	NM_015485	25950		NM_015485	ENSG00000122481	RWDD3	RSUME	RWD domain containing 3	protein-coding
127994	chr2	46945301	46946080	+	0	NA	intron (NM_020458, intron 1 of 19)	AluJo|SINE|Alu	-3835	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
210099	chr7	97533051	97533150	+	0	NA	Intergenic	L1PA3|LINE|L1	-198986	NM_003182	6863		NM_003182	ENSG00000006128	TAC1	Hs.2563|NK2|NKNA|NPK|TAC2	tachykinin precursor 1	protein-coding
197454	chr6	75207721	75208330	+	0	NA	Intergenic	Intergenic	-1972	NM_080645	1303		NM_004370	ENSG00000111799	COL12A1	BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2	collagen type XII alpha 1 chain	protein-coding
18734	chr1	167472701	167473250	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	45554	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
28647	chr10	59880621	59881480	+	0	NA	intron (NM_005436, intron 1 of 8)	intron (NM_005436, intron 1 of 8)	25506	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
236100	chrX	56803121	56803850	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-65901	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
156038	chr22	39968221	39968880	+	0	NA	intron (NM_001291828, intron 3 of 4)	intron (NM_001291828, intron 3 of 4)	21733	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
105316	chr17	82559401	82559600	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	39768	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
113127	chr19	8311621	8312080	+	0	NA	intron (NM_005001, intron 3 of 3)	intron (NM_005001, intron 3 of 3)	-3492	NM_001165895	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
186268	chr5	134532851	134533180	+	0	NA	intron (NM_015288, intron 1 of 10)	intron (NM_015288, intron 1 of 10)	6907	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
136606	chr2	178514501	178514900	+	0	NA	3' UTR (NM_019091, exon 8 of 8)	3' UTR (NM_019091, exon 8 of 8)	-8127	NR_038272	100506866		NR_038271	ENSG00000237298	TTN-AS1	-	TTN antisense RNA 1	ncRNA
225850	chr9	38076251	38076700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7248	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
173466	chr4	8607651	8608130	+	0	NA	intron (NM_001014447, intron 7 of 10)	intron (NM_001014447, intron 7 of 10)	15125	NM_001014447	8532		NM_003652	ENSG00000109625	CPZ	-	carboxypeptidase Z	protein-coding
148106	chr20	63363151	63363450	+	0	NA	intron (NR_110634, intron 2 of 4)	intron (NR_110634, intron 2 of 4)	-1951	NR_046317	1137		NM_000744	ENSG00000101204	CHRNA4	BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4	cholinergic receptor nicotinic alpha 4 subunit	protein-coding
112489	chr19	6426401	6426780	+	0	NA	intron (NM_173637, intron 6 of 6)	intron (NM_173637, intron 6 of 6)	-1779	NM_001366300	8570		NM_003685	ENSG00000088247	KHSRP	FBP2|FUBP2|KSRP|p75	KH-type splicing regulatory protein	protein-coding
22249	chr1	212616721	212617450	+	0	NA	intron (NM_001206484, intron 3 of 4)	L2a|LINE|L2	2067	NM_001206486	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
214091	chr7	143639451	143639750	+	0	NA	3' UTR (NM_001130026, exon 8 of 11)	3' UTR (NM_001130026, exon 8 of 11)	8046	NR_110549	653691		NR_110549		TCAF2P1	FAM115D|FAM139B|TCAF2BP	TRPM8 channel associated factor 2 pseudogene 1	pseudo
104590	chr17	81396471	81397550	+	0	NA	intron (NM_001377448, intron 1 of 27)	CpG-11870	1553	NM_001291324	57597		NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
23455	chr1	228478521	228479950	+	0	NA	Intergenic	Intergenic	-8147	NM_001010858	149603		NM_001010858	ENSG00000168159	RNF187	RACO-1|RACO1	ring finger protein 187	protein-coding
194146	chr6	32033551	32034080	+	0	NA	exon (NM_001002029, exon 36 of 41).4	exon (NM_001002029, exon 36 of 41).4	-4600	NM_001368144	1589		NM_000500	ENSG00000231852	CYP21A2	CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B	cytochrome P450 family 21 subfamily A member 2	protein-coding
51106	chr12	50054501	50054900	+	0	NA	Intergenic	AluY|SINE|Alu	-2896	NM_001095	41		NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding
123945	chr19	55384901	55387100	+	0	NA	promoter-TSS (NM_001363697)	promoter-TSS (NM_001363697)	68	NM_001363697	6158		NM_000991	ENSG00000108107	RPL28	L28|eL28	ribosomal protein L28	protein-coding
80720	chr16	3097051	3097780	+	0	NA	intron (NM_032805, intron 1 of 5)	intron (NM_032805, intron 1 of 5)	1879	NM_001282415	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
151563	chr21	46560701	46560980	+	0	NA	intron (NM_001353942, intron 33 of 37)	intron (NM_001353942, intron 33 of 37)	44242	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
14487	chr1	144539671	144540430	+	0	NA	Intergenic	CpG	11893	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
199202	chr6	111786751	111787530	+	0	NA	intron (NM_002037, intron 2 of 13)	L1PA5|LINE|L1	-27223	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
144978	chr20	37288851	37290580	+	0	NA	promoter-TSS (NM_001369743)	promoter-TSS (NM_001369743)	60	NM_001369743	63905		NM_022077	ENSG00000101363	MANBAL	-	mannosidase beta like	protein-coding
52502	chr12	56038271	56038700	+	0	NA	TTS (NM_001351090)	TTS (NM_001351090)	-3433	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
136956	chr2	190382921	190383600	+	0	NA	Intergenic	AluSx3|SINE|Alu	-24316	NM_001375989	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
150666	chr21	43433301	43433880	+	0	NA	Intergenic	Intergenic	-6459	NM_001320643	102724428		NM_001320643	ENSG00000275993	LOC102724428	SIK|SIK-1|SIK1|SIK1B|SNF1LK	salt inducible kinase 1B (putative)	protein-coding
115887	chr19	16578821	16579080	+	0	NA	intron (NM_004831, intron 1 of 2)	AluSg|SINE|Alu	-6535	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
203432	chr7	348801	349000	+	0	NA	Intergenic	MIRb|SINE|MIR	-30525	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
6653	chr1	29017301	29017730	+	0	NA	intron (NM_001376013, intron 6 of 20)	intron (NM_001376013, intron 6 of 20)	102939	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
439	chr1	1114121	1114580	+	0	NA	intron (NM_017891, intron 1 of 9)	AluJb|SINE|Alu	1739	NM_017891	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
72142	chr15	29039151	29039250	+	0	NA	intron (NM_001353793, intron 2 of 12).2	intron (NM_001353793, intron 2 of 12).2	-31458	NM_001353797	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
209161	chr7	75236771	75236930	+	0	NA	promoter-TSS (NM_001382504).2	promoter-TSS (NM_001382504).2	-337	NM_001382505	643862		NM_001382504	ENSG00000274570	SPDYE10	SPDYE10P	speedy/RINGO cell cycle regulator family member E10	protein-coding
41847	chr11	67126351	67126650	+	0	NA	intron (NM_012308, intron 2 of 20)	AluSx1|SINE|Alu	7237	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
237796	chrX	129846651	129847150	+	0	NA	Intergenic	Intergenic	-3014	NM_016032	51114		NM_016032	ENSG00000188706	ZDHHC9	CGI89|CXorf11|DHHC9|MMSA1|MRXSR|MRXSZ|ZDHHC10|ZNF379|ZNF380	zinc finger DHHC-type palmitoyltransferase 9	protein-coding
71546	chr14	106233321	106233580	+	0	NA	Intergenic	MER41B|LTR|ERV1	-54224	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
74571	chr15	60541801	60542900	+	0	NA	intron (NM_134261, intron 2 of 10)	(AC)n|Simple_repeat|Simple_repeat	50176	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
47994	chr12	6913601	6915600	+	0	NA	promoter-TSS (NM_001975)	promoter-TSS (NM_001975)	20	NM_001975	2026		NM_001975	ENSG00000111674	ENO2	HEL-S-279|NSE	enolase 2	protein-coding
223195	chr8	143574851	143575250	+	0	NA	exon (NM_145201, exon 12 of 13)	exon (NM_145201, exon 12 of 13)	-2278	NM_001100878	642475		NM_001100878	ENSG00000204839	MROH6	C8orf73	maestro heat like repeat family member 6	protein-coding
23937	chr1	235103921	235106330	+	0	NA	Intergenic	Intergenic	22812	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
85419	chr16	50324451	50324550	+	0	NA	intron (NM_013263, intron 11 of 16)	L2a|LINE|L2	31884	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
81411	chr16	8644651	8645100	+	0	NA	intron (NM_024109, intron 10 of 10)	intron (NM_024109, intron 10 of 10)	23177	NR_134608	79091		NM_024109	ENSG00000067365	METTL22	C16orf68	methyltransferase 22, Kin17 lysine	protein-coding
19659	chr1	180494451	180494750	+	0	NA	intron (NM_032360, intron 2 of 7)	Charlie10a|DNA|hAT-Charlie	7977	NM_032360	84320		NM_032360	ENSG00000230124	ACBD6	NEDPM	acyl-CoA binding domain containing 6	protein-coding
87962	chr16	80027121	80027480	+	0	NA	Intergenic	Intergenic	232051	NR_104661	101928248		NR_104660	ENSG00000260876	LINC01229	-	long intergenic non-protein coding RNA 1229	ncRNA
134403	chr2	138523351	138523850	+	0	NA	intron (NM_001001664, intron 1 of 10)	THE1B-int|LTR|ERVL-MaLR	21830	NM_001001664	339745		NM_001001664	ENSG00000144228	SPOPL	BTBD33	speckle type BTB/POZ protein like	protein-coding
135005	chr2	153476921	153477530	+	0	NA	TTS (NM_019845)	TTS (NM_019845)	1537	NM_019845	56475		NM_019845	ENSG00000177519	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator homolog	protein-coding
38586	chr11	46237021	46238540	+	0	NA	Intergenic	CpG	-39882	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
142667	chr20	5933801	5934000	+	0	NA	Intergenic	LTR55|LTR|ERVL?	16633	NM_015939	51605		NM_015939	ENSG00000089195	TRMT6	CGI-09|GCD10|Gcd10p	tRNA methyltransferase 6 non-catalytic subunit	protein-coding
20664	chr1	200262651	200262750	+	0	NA	Intergenic	MIR|SINE|MIR	111092	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
78819	chr15	99682301	99682650	+	0	NA	intron (NM_001130927, intron 5 of 9)	intron (NM_001130927, intron 5 of 9)	49497	NM_001130928	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
237768	chrX	129759301	129760380	+	0	NA	intron (NM_003399, intron 15 of 20)	intron (NM_003399, intron 15 of 20)	-20109	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
166426	chr3	113745901	113746500	+	0	NA	promoter-TSS (NM_025146)	promoter-TSS (NM_025146)	49	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
77350	chr15	82571751	82572050	+	0	NA	promoter-TSS (NM_001288820).2	promoter-TSS (NM_001288820).2	-134	NM_001079533	64506		NM_030594	ENSG00000214575	CPEB1	CPE-BP1|CPEB|CPEB-1|h-CPEB|hCPEB-1	cytoplasmic polyadenylation element binding protein 1	protein-coding
93971	chr17	21707151	21707450	+	0	NA	Intergenic	Intergenic	14777	NM_001194958	100134444		NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium inwardly rectifying channel subfamily J member 18	protein-coding
89957	chr16	89766721	89766980	+	0	NA	intron (NM_001286167, intron 27 of 42)	intron (NM_001286167, intron 27 of 42)	45313	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
1569	chr1	3535951	3536250	+	0	NA	intron (NM_001409, intron 4 of 36)	intron (NM_001409, intron 4 of 36)	24690	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
107572	chr18	48833801	48835600	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	108107	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
50253	chr12	46254571	46255050	+	0	NA	intron (NM_001077484, intron 1 of 16)	MER41-int|LTR|ERV1	11706	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
163395	chr3	50507301	50507500	+	0	NA	Intergenic	Intergenic	-3156	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
5492	chr1	25704051	25704680	+	0	NA	intron (NM_001385185, intron 1 of 10)	intron (NM_001385185, intron 1 of 10)	8210	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
12173	chr1	100358171	100358600	+	0	NA	intron (NM_001319210, intron 2 of 16)	intron (NM_001319210, intron 2 of 16)	5879	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
170824	chr3	189948401	189948600	+	0	NA	Intergenic	Intergenic	118578	NR_030642	100126340		NR_030642	ENSG00000216058	MIR944	MIRN944|hsa-mir-944|mir-944	microRNA 944	ncRNA
93302	chr17	18156471	18157230	+	0	NA	intron (NM_016239, intron 47 of 64)	intron (NM_016239, intron 47 of 64)	-26978	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
205286	chr7	10642071	10642290	+	0	NA	intron (NR_147499, intron 1 of 2)	intron (NR_147499, intron 1 of 2)	-60496	NR_149037	100131472		NR_149037		LOC100131472	-	uncharacterized LOC100131472	ncRNA
181664	chr5	50429901	50430680	+	0	NA	intron (NM_198449, intron 1 of 8)	intron (NM_198449, intron 1 of 8)	10998	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
29486	chr10	70575721	70576900	+	0	NA	Intergenic	MER72|LTR|ERV1	26431	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
33201	chr10	113850601	113850830	+	0	NA	intron (NM_001271816, intron 2 of 9)	intron (NM_001271816, intron 2 of 9)	3367	NM_014881	9937		NM_014881	ENSG00000198924	DCLRE1A	PSO2|SNM1|SNM1A	DNA cross-link repair 1A	protein-coding
27058	chr10	27144801	27145200	+	0	NA	intron (NM_139312, intron 4 of 19)	AluY|SINE|Alu	9384	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
58616	chr12	132491771	132493230	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	2349	NM_001382740	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
74620	chr15	60667121	60667780	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	-14119	NR_120318	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
92787	chr17	15886801	15887000	+	0	NA	Intergenic	Intergenic	-58017	NM_000676	136		NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding
40215	chr11	63533021	63533500	+	0	NA	Intergenic	LTR72|LTR|ERV1	-3548	NM_004585	5920		NM_004585	ENSG00000133321	PLAAT4	HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3	phospholipase A and acyltransferase 4	protein-coding
185921	chr5	132833801	132834000	+	0	NA	Intergenic	Intergenic	-3253	NM_001172700	134549		NM_133456	ENSG00000164403	SHROOM1	APXL2	shroom family member 1	protein-coding
164724	chr3	68636051	68636230	+	0	NA	Intergenic	Intergenic	135503	NR_135532	105377146		NR_135532	ENSG00000286967	LOC105377146	-	uncharacterized LOC105377146	ncRNA
63837	chr14	21506271	21507550	+	0	NA	intron (NM_019852, intron 1 of 10)	AluJb|SINE|Alu	4430	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
62357	chr13	99207371	99207730	+	0	NA	intron (NR_026644, intron 1 of 8)	intron (NR_026644, intron 1 of 8)	6696	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
190171	chr5	178151521	178151780	+	0	NA	intron (NM_017838, intron 2 of 3)	L2c|LINE|L2	2235	NM_017838	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
186296	chr5	134564521	134564980	+	0	NA	intron (NM_001289985, intron 8 of 11)	intron (NM_001289985, intron 8 of 11)	38642	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
115506	chr19	15416371	15417000	+	0	NA	intron (NM_014371, intron 1 of 13)	intron (NM_014371, intron 1 of 13)	2303	NM_014371	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
93748	chr17	19875521	19876050	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-7849	NM_001142610	9706		NM_014683	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
181763	chr5	50725621	50726300	+	0	NA	intron (NM_024615, intron 2 of 25)	MamRTE1|LINE|RTE-BovB	58546	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
173498	chr4	9381001	9381480	+	0	NA	Intergenic	CpG	13366	NR_027279	391622		NM_212553	ENSG00000205946	USP17L6P	DUB4|USP17L6|vDUB4	ubiquitin specific peptidase 17 like family member 6, pseudogene	pseudo
75608	chr15	67116501	67117430	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	-8751	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
8046	chr1	38564271	38564830	+	0	NA	Intergenic	Intergenic	89354	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
198341	chr6	104788501	104789000	+	0	NA	intron (NR_146787, intron 9 of 21)	intron (NR_146787, intron 9 of 21)	70796	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
49250	chr12	19444421	19445030	+	0	NA	intron (NM_001267043, intron 1 of 8)	intron (NM_001267043, intron 1 of 8)	4126	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
131842	chr2	98678951	98679400	+	0	NA	intron (NM_012214, intron 2 of 15)	AluY|SINE|Alu	-15702	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
5002	chr1	24392021	24393850	+	0	NA	intron (NM_001199014, intron 2 of 9)	intron (NM_001199014, intron 2 of 9)	-20552	NM_001322854	57185		NM_020448	ENSG00000001461	NIPAL3	DJ462O23.2|NPAL3|SLC57A5	NIPA like domain containing 3	protein-coding
63014	chr13	112691371	112691750	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	1231	NM_015205	23250		NM_015205	ENSG00000068650	ATP11A	ATPIH|ATPIS|AUNA2|DFNA84|HLD24	ATPase phospholipid transporting 11A	protein-coding
99482	chr17	50178001	50178830	+	0	NA	Intergenic	Intergenic	-5939	NR_024192	373861		NM_194072		H1-9P	H1-9|H1.9|HILS1	H1.9 linker histone, pseudogene	pseudo
156974	chr22	42443621	42444880	+	0	NA	Intergenic	Intergenic	-6264	NM_001371362	150372		NM_145912	ENSG00000235568	NFAM1	CNAIP	NFAT activating protein with ITAM motif 1	protein-coding
107465	chr18	46918951	46919450	+	0	NA	intron (NM_001353908, intron 1 of 11)	AluSz|SINE|Alu	945	NM_001324060	9063		NM_004671	ENSG00000078043	PIAS2	ARIP3|DIP|MIZ1|PIASX|SIZ2|ZMIZ4	protein inhibitor of activated STAT 2	protein-coding
110485	chr19	2033471	2033630	+	0	NA	Intergenic	Intergenic	17694	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
44832	chr11	114064201	114064800	+	0	NA	exon (NM_001018011, exon 2 of 7)	exon (NM_001018011, exon 2 of 7)	1289	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
122276	chr19	49064951	49065450	+	0	NA	Intergenic	MSR1|Satellite|Satellite	-1333	NM_006179	4909		NM_006179	ENSG00000225950	NTF4	GLC10|GLC1O|NT-4|NT-4/5|NT-5|NT4|NT5|NTF5	neurotrophin 4	protein-coding
154300	chr22	31942201	31942400	+	0	NA	intron (NR_126507, intron 1 of 2)	L2|LINE|L2	-2235	NM_003405	7533		NM_003405	ENSG00000128245	YWHAH	YWHA1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta	protein-coding
206860	chr7	37444321	37444580	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	4502	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
23306	chr1	228073871	228074450	+	0	NA	non-coding (NR_158166, exon 1 of 1)	non-coding (NR_158166, exon 1 of 1)	2390	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
3552	chr1	16151851	16152200	+	0	NA	intron (NM_004431, intron 1 of 16)	intron (NM_004431, intron 1 of 16)	4044	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
144301	chr20	34715001	34716280	+	0	NA	intron (NM_001242539, intron 11 of 11)	intron (NM_001242539, intron 11 of 11)	10921	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
182611	chr5	66168521	66168780	+	0	NA	intron (NM_139168, intron 8 of 12)	AluSz|SINE|Alu	23815	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
153212	chr22	23897271	23897680	+	0	NA	intron (NR_038911, intron 1 of 2).2	intron (NR_038911, intron 1 of 2).2	1455	NR_038911	284889		NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA
113292	chr19	8554671	8554830	+	0	NA	intron (NM_012335, intron 2 of 27)	intron (NM_012335, intron 2 of 27)	22692	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
164623	chr3	66390621	66391080	+	0	NA	intron (NM_001377344, intron 11 of 17)	L1MB7|LINE|L1	14917	NM_001377348	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
30458	chr10	79114471	79114800	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	45669	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
89435	chr16	88950601	88950800	+	0	NA	non-coding (NR_168285, exon 2 of 2)	non-coding (NR_168285, exon 2 of 2)	-9350	NM_175931	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
48202	chr12	8078421	8079100	+	0	NA	Intergenic	AluSz|SINE|Alu	-3451	NR_024260	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
110618	chr19	2199271	2200080	+	0	NA	intron (NM_032482, intron 7 of 27)	intron (NM_032482, intron 7 of 27)	34474	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
144034	chr20	33536421	33536880	+	0	NA	intron (NM_001032999, intron 1 of 10)	SVA_D|Retroposon|SVA	-25715	NM_005093	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
153983	chr22	30384071	30384600	+	0	NA	intron (NM_001017981, intron 5 of 8)	intron (NM_001017981, intron 5 of 8)	3076	NM_001017981	200312		NM_001017981	ENSG00000099999	RNF215	-	ring finger protein 215	protein-coding
150698	chr21	43714021	43714380	+	0	NA	Intergenic	AluY|SINE|Alu	-4929	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
7232	chr1	32332351	32332800	+	0	NA	intron (NM_004964, intron 12 of 13)	intron (NM_004964, intron 12 of 13)	3658	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
125102	chr2	9739221	9740100	+	0	NA	Intergenic	Intergenic	-103782	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
11326	chr1	89464021	89464630	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	56646	NR_003133	400759		NR_003133	ENSG00000290525	GBP1P1	LIMIT	guanylate binding protein 1 pseudogene 1	pseudo
181081	chr5	36870351	36871050	+	0	NA	TTS (NR_046262)	TTS (NR_046262)	5994	NR_046262	646719		NR_046262	ENSG00000285967	NIPBL-DT	NIPBL-AS|NIPBL-AS1	NIPBL divergent transcript	ncRNA
142311	chr20	3563571	3563830	+	0	NA	intron (NM_001207047, intron 10 of 24)	intron (NM_001207047, intron 10 of 24)	92682	NM_139322	8455		NM_012070	ENSG00000088812	ATRN	DPPT-L|MGCA	attractin	protein-coding
184601	chr5	103211571	103212230	+	0	NA	3' UTR (NM_015216, exon 30 of 30)	3' UTR (NM_015216, exon 30 of 30)	-46474	NM_001377283	90355		NM_033211	ENSG00000181751	MACIR	C5orf30	macrophage immunometabolism regulator	protein-coding
136852	chr2	186485651	186487400	+	0	NA	intron (NM_018471, intron 1 of 9)	CpG	265	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
213478	chr7	139040271	139040630	+	0	NA	Intergenic	AluSp|SINE|Alu	3707	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
187163	chr5	140567171	140568300	+	0	NA	exon (NM_080670, exon 3 of 3)	exon (NM_080670, exon 3 of 3)	-3131	NM_133174	10307		NM_006051	ENSG00000113108	APBB3	FE65L2|SRA	amyloid beta precursor protein binding family B member 3	protein-coding
233149	chr9	137167251	137167650	+	0	NA	exon (NM_021569, exon 19 of 19)	exon (NM_021569, exon 19 of 19)	1820	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
103147	chr17	77409601	77410550	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	4998	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
88894	chr16	87762001	87763230	+	0	NA	intron (NM_001351937, intron 1 of 11)	L2a|LINE|L2	3371	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
157605	chr22	46028601	46029200	+	0	NA	Intergenic	Intergenic	15968	NR_027036	100271722		NR_027036		LINC00899	-	long intergenic non-protein coding RNA 899	ncRNA
119880	chr19	41529271	41530250	+	0	NA	Intergenic	Intergenic	-5738	NR_110724	101927931		NR_110724	ENSG00000270164	LINC01480	-	long intergenic non-protein coding RNA 1480	ncRNA
229857	chr9	126391701	126391900	+	0	NA	intron (NM_033446, intron 4 of 9)	intron (NM_033446, intron 4 of 9)	18704	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
49451	chr12	24960351	24960530	+	0	NA	Intergenic	L1M1|LINE|L1	-11339	NM_001178092	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
1982	chr1	6610501	6610930	+	0	NA	Intergenic	Intergenic	-3016	NM_153812	148479		NM_153812	ENSG00000116273	PHF13	PHF5|SPOC1	PHD finger protein 13	protein-coding
165754	chr3	105746621	105748330	+	0	NA	intron (NM_001321811, intron 4 of 16)	intron (NM_001321811, intron 4 of 16)	120116	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
188011	chr5	149546921	149547530	+	0	NA	intron (NM_001892, intron 2 of 9)	intron (NM_001892, intron 2 of 9)	3140	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
184951	chr5	113043671	113043830	+	0	NA	intron (NM_001085377, intron 16 of 18)	intron (NM_001085377, intron 16 of 18)	66952	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
75494	chr15	66369421	66370400	+	0	NA	Intergenic	Intergenic	-13194	NM_001289986	54962		NM_017858	ENSG00000075131	TIPIN	-	TIMELESS interacting protein	protein-coding
233092	chr9	137108471	137109050	+	0	NA	non-coding (NR_045720, exon 13 of 13)	non-coding (NR_045720, exon 13 of 13)	5973	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
112390	chr19	6087901	6088450	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	22325	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
157955	chr22	49806551	49806850	+	0	NA	intron (NM_001304808, intron 2 of 12)	intron (NM_001304808, intron 2 of 12)	17631	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
39380	chr11	59802371	59802900	+	0	NA	3' UTR (NM_001178040, exon 10 of 10)	3' UTR (NM_001178040, exon 10 of 10)	8143	NM_017840	54948		NM_017840	ENSG00000166902	MRPL16	L16mt|MRP-L16|PNAS-111|uL16m	mitochondrial ribosomal protein L16	protein-coding
152310	chr22	20338401	20339600	+	0	NA	promoter-TSS (NR_136572)	promoter-TSS (NR_136572)	87	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
91666	chr17	5527671	5528050	+	0	NA	intron (NM_014922, intron 12 of 15)	intron (NM_014922, intron 12 of 15)	-26854	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
48862	chr12	12433321	12433580	+	0	NA	intron (NM_058169, intron 2 of 3)	FLAM_A|SINE|Alu	76372	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
74956	chr15	63814351	63814800	+	0	NA	intron (NM_003922, intron 1 of 77)	AluSz6|SINE|Alu	19373	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
41725	chr11	66660471	66661230	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluY|SINE|Alu	17037	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
170046	chr3	182790271	182790700	+	0	NA	Intergenic	LTR29|LTR|ERV1	-3019	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
8315	chr1	40079571	40079730	+	0	NA	intron (NM_001363695, intron 6 of 7)	AluSz|SINE|Alu	17602	NM_000310	5538		NM_000310	ENSG00000131238	PPT1	CLN1|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding
62219	chr13	98504301	98505150	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	17400	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
53836	chr12	69534521	69534780	+	0	NA	intron (NM_001278355, intron 4 of 9)	intron (NM_001278355, intron 4 of 9)	19210	NR_145803	109623461		NR_145803		SNORA113	-	small nucleolar RNA, H/ACA box 113	snoRNA
52356	chr12	55635271	55635730	+	0	NA	Intergenic	MIR|SINE|MIR	-1392	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
99585	chr17	50503951	50504800	+	0	NA	Intergenic	AluJb|SINE|Alu	-4064	NR_158785	84073		NM_032133	ENSG00000136449	MYCBPAP	AMAP-1|AMAP1	MYCBP associated protein	protein-coding
33861	chr10	124398951	124399250	+	0	NA	intron (NM_001322971, intron 7 of 7)	intron (NM_001322971, intron 7 of 7)	19823	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
216715	chr8	22365671	22366030	+	0	NA	Intergenic	Intergenic	-1428	NM_001351655	23516		NM_015359	ENSG00000104635	SLC39A14	HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
34611	chr10	133273851	133273950	+	0	NA	intron (NM_001164490, intron 3 of 19)	intron (NM_001164490, intron 3 of 19)	2968	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
165903	chr3	106335321	106335630	+	0	NA	Intergenic	Intergenic	-466074	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
231168	chr9	129890001	129890980	+	0	NA	3' UTR (NM_015033, exon 17 of 17)	3' UTR (NM_015033, exon 17 of 17)	20885	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
16888	chr1	155854201	155854600	+	0	NA	intron (NM_001282856, intron 1 of 31)	AluY|SINE|Alu	2814	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
181200	chr5	39153921	39154480	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	65363	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
12713	chr1	109503771	109504680	+	0	NA	TTS (NM_020703)	TTS (NM_020703)	5502	NM_020703	57463		NM_020703	ENSG00000181754	AMIGO1	ALI2|AMIGO|AMIGO-1	adhesion molecule with Ig like domain 1	protein-coding
168988	chr3	152411421	152412000	+	0	NA	intron (NM_001314057, intron 3 of 11)	intron (NM_001314057, intron 3 of 11)	-70720	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
147860	chr20	62815351	62815900	+	0	NA	Intergenic	Intergenic	-1425	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
68617	chr14	89638751	89639250	+	0	NA	Intergenic	Intergenic	-19835	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
157861	chr22	49052001	49052460	+	0	NA	Intergenic	CpG	185460	NR_038944	100128946		NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA
203997	chr7	1819201	1819950	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	24678	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
133999	chr2	130848471	130849050	+	0	NA	intron (NM_001375900, intron 1 of 12)	intron (NM_001375900, intron 1 of 12)	11846	NM_001375901	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
92464	chr17	8630241	8632000	+	0	NA	promoter-TSS (NM_001256012)	promoter-TSS (NM_001256012)	-359	NM_001256095	4628		NM_005964	ENSG00000133026	MYH10	NMMHC-IIB|NMMHCB	myosin heavy chain 10	protein-coding
220579	chr8	100830621	100831080	+	0	NA	Intergenic	MER4D|LTR|ERV1	-108762	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
89532	chr16	89189251	89189550	+	0	NA	intron (NM_004933, intron 7 of 13)	intron (NM_004933, intron 7 of 13)	11137	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
33400	chr10	118332271	118332550	+	0	NA	intron (NM_001134672, intron 5 of 7)	intron (NM_001134672, intron 5 of 7)	9914	NM_001134672	63877		NM_022063	ENSG00000165669	FAM204A	C10orf84|bA319I23.1	family with sequence similarity 204 member A	protein-coding
161918	chr3	45996871	45997030	+	0	NA	Intergenic	Intergenic	-1126	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
21662	chr1	206692621	206693130	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	7970	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
16181	chr1	153795401	153796450	+	0	NA	intron (NR_126565, intron 2 of 2)	ORSL|DNA|hAT-Tip100	1978	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
198274	chr6	99606751	99607280	+	0	NA	5' UTR (NM_021620, exon 1 of 4)	5' UTR (NM_021620, exon 1 of 4)	182	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
165653	chr3	101830471	101830630	+	0	NA	intron (NM_001005474, intron 2 of 12)	L1PA16|LINE|L1	2560	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
141364	chr2	240646071	240646780	+	0	NA	Intergenic	Intergenic	21180	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
70056	chr14	100132471	100132830	+	0	NA	intron (NM_016337, intron 7 of 13)	intron (NM_016337, intron 7 of 13)	22995	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
154539	chr22	36158471	36159250	+	0	NA	intron (NM_030644, intron 1 of 4)	intron (NM_030644, intron 1 of 4)	1895	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
184865	chr5	112346521	112346780	+	0	NA	intron (NM_022140, intron 1 of 22)	intron (NM_022140, intron 1 of 22)	72627	NR_144931	64097		NM_022140	ENSG00000129595	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
159708	chr3	15638271	15638430	+	0	NA	intron (NM_001281726, intron 2 of 2)	intron (NM_001281726, intron 2 of 2)	36381	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
33168	chr10	112949021	112950600	+	0	NA	promoter-TSS (NM_001198528)	promoter-TSS (NM_001198528)	-437	NM_001146274	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
71758	chr15	21014021	21014280	+	0	NA	intron (NR_145444, intron 1 of 3)	L1ME3B|LINE|L1	10873	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
26733	chr10	22684721	22685080	+	0	NA	intron (NM_005028, intron 1 of 9)	MamRTE1|LINE|RTE-BovB	29208	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
116181	chr19	17447171	17447400	+	0	NA	intron (NM_001190844, intron 1 of 2)	AluJr|SINE|Alu	1383	NM_001190844	100130519		NM_001190844	ENSG00000188051	TMEM221	Jiraiya	transmembrane protein 221	protein-coding
73639	chr15	44675801	44676150	+	0	NA	intron (NM_001145112, intron 2 of 15)	FLAM_A|SINE|Alu	913	NM_001330283	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
182367	chr5	60649451	60649550	+	0	NA	intron (NM_001145208, intron 2 of 9)	intron (NM_001145208, intron 2 of 9)	50666	NM_001145208	55789		NM_018369	ENSG00000035499	DEPDC1B	BRCC3|XTP1	DEP domain containing 1B	protein-coding
201808	chr6	150008521	150009230	+	0	NA	Intergenic	Intergenic	-3731	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
183259	chr5	76427751	76428250	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	24715	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
20190	chr1	193068121	193068380	+	0	NA	intron (NM_001042370, intron 1 of 9)	MER5A|DNA|hAT-Charlie	-8174	NM_001350852	51377		NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
135884	chr2	171141401	171141600	+	0	NA	intron (NM_001136554, intron 1 of 20)	L1MEg|LINE|L1	19393	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
132413	chr2	105806971	105808230	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	-44247	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
23044	chr1	226569901	226570300	+	0	NA	intron (NM_001003665, intron 1 of 3)	intron (NM_001003665, intron 1 of 3)	21336	NM_001003665	375057		NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
2913	chr1	11690821	11691930	+	0	NA	promoter-TSS (NM_198545)	promoter-TSS (NM_198545)	246	NM_001127325	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
189508	chr5	173293901	173294830	+	0	NA	Intergenic	Intergenic	-9365	NR_162132	113219469		NR_162132		MIR12118	-	microRNA 12118	ncRNA
184739	chr5	109699751	109699930	+	0	NA	intron (NM_002372, intron 1 of 21)	intron (NM_002372, intron 1 of 21)	10474	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
131690	chr2	97732621	97732950	+	0	NA	promoter-TSS (NM_207519)	promoter-TSS (NM_207519)	-515	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
76922	chr15	78051621	78053400	+	0	NA	intron (NM_144572, intron 2 of 12)	intron (NM_144572, intron 2 of 12)	25142	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
224820	chr9	26940621	26941500	+	0	NA	intron (NM_001321546, intron 1 of 12)	intron (NM_001321546, intron 1 of 12)	-5930	NM_001099223	80173		NM_025103	ENSG00000096872	IFT74	BBS22|CCDC2|CMG-1|CMG1|JBTS40|SPGF58	intraflagellar transport 74	protein-coding
52198	chr12	54360701	54361130	+	0	NA	intron (NR_120487, intron 1 of 3)	intron (NR_120487, intron 1 of 3)	3571	NM_020370	53831		NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding
231196	chr9	129932951	129933650	+	0	NA	intron (NM_001363755, intron 6 of 15)	intron (NM_001363755, intron 6 of 15)	63695	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
54581	chr12	92402051	92402350	+	0	NA	Intergenic	MIRb|SINE|MIR	-19331	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
76893	chr15	77989171	77989330	+	0	NA	Intergenic	Intergenic	4975	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
148067	chr20	63280971	63281480	+	0	NA	intron (NM_001281483, intron 6 of 12)	intron (NM_001281483, intron 6 of 12)	-3087	NR_104023	55738		NM_018209	ENSG00000101199	ARFGAP1	ARF1GAP|HRIHFB2281	ADP ribosylation factor GTPase activating protein 1	protein-coding
222575	chr8	140629451	140630430	+	0	NA	intron (NM_012154, intron 1 of 18)	GA-rich|Low_complexity|Low_complexity	5693	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
51433	chr12	52029371	52030300	+	0	NA	intron (NM_001202233, intron 1 of 7)	intron (NM_001202233, intron 1 of 7)	7003	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
199028	chr6	111258051	111258150	+	0	NA	Intergenic	AluSz|SINE|Alu	-1239	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
166782	chr3	122497301	122498250	+	0	NA	intron (NM_002264, intron 1 of 13)	L1MB8|LINE|L1	17164	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
202484	chr6	158270651	158271430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-41425	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
20165	chr1	192811401	192811600	+	0	NA	exon (NM_002923, exon 5 of 5)	exon (NM_002923, exon 5 of 5)	2461	NM_002923	5997		NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G protein signaling 2	protein-coding
205813	chr7	24560651	24561250	+	0	NA	Intergenic	Intergenic	-12502	NM_016447	51678		NM_016447	ENSG00000105926	PALS2	MPP6|VAM-1|VAM1|p55T	protein associated with LIN7 2, MAGUK p55 family member	protein-coding
149406	chr21	31175971	31176730	+	0	NA	intron (NM_001353694, intron 15 of 27)	intron (NM_001353694, intron 15 of 27)	-15410	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
196562	chr6	44113501	44113700	+	0	NA	3' UTR (NM_032111, exon 3 of 3)	3' UTR (NM_032111, exon 3 of 3)	12667	NM_001318770	64928		NM_032111	ENSG00000180992	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32|uL14m	mitochondrial ribosomal protein L14	protein-coding
133124	chr2	112657851	112658430	+	0	NA	intron (NM_005415, intron 6 of 10)	intron (NM_005415, intron 6 of 10)	12201	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
1254	chr1	2296901	2297900	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	55261	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
52405	chr12	55747871	55748030	+	0	NA	intron (NM_005811, intron 1 of 2)	intron (NM_005811, intron 1 of 2)	4828	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
52891	chr12	57208551	57209250	+	0	NA	intron (NM_002332, intron 78 of 88)	intron (NM_002332, intron 78 of 88)	-7894	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
35792	chr11	2187771	2188330	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	14987	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
215205	chr7	155807171	155807530	+	0	NA	intron (NR_132318, intron 1 of 4)	CpG-26630	1813	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
23552	chr1	229303901	229304100	+	0	NA	non-coding (NR_073545, exon 8 of 8)	non-coding (NR_073545, exon 8 of 8)	-32846	NR_149313	105373159		NR_149312	ENSG00000177788	RAB4A-AS1	-	RAB4A antisense RNA 1	ncRNA
117538	chr19	20776111	20777400	+	0	NA	intron (NM_001355197, intron 1 of 3)	intron (NM_001355197, intron 1 of 3)	451	NM_001355197	7617		NM_001009883	ENSG00000160229	ZNF66	ZNF66P	zinc finger protein 66	protein-coding
81210	chr16	4503301	4504350	+	0	NA	intron (NM_001286270, intron 3 of 7)	intron (NM_001286270, intron 3 of 7)	7967	NM_001127205	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
193718	chr6	31194121	31195030	+	0	NA	Intergenic	L2b|LINE|L2	-3185	NR_026791	253018		NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27	ncRNA
176930	chr4	102825301	102826200	+	0	NA	5' UTR (NM_001300795, exon 1 of 8)	5' UTR (NM_001300795, exon 1 of 8)	110	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
208790	chr7	73590571	73591600	+	0	NA	Intergenic	L2a|LINE|L2	-12506	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
134291	chr2	135888071	135888430	+	0	NA	Intergenic	LTR14A|LTR|ERVK	-11807	NM_005915	4175		NM_005915	ENSG00000076003	MCM6	MCG40308|Mis5|P105MCM	minichromosome maintenance complex component 6	protein-coding
168549	chr3	146543871	146545130	+	0	NA	promoter-TSS (NM_001363874)	promoter-TSS (NM_001363874)	55	NM_001363872	5359		NM_021105	ENSG00000188313	PLSCR1	MMTRA1B	phospholipid scramblase 1	protein-coding
98021	chr17	45396301	45397050	+	0	NA	exon (NM_199282, exon 12 of 17).2	exon (NM_199282, exon 12 of 17).2	13711	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
174071	chr4	26959351	26959850	+	0	NA	intron (NM_020860, intron 3 of 11)	L2a|LINE|L2	98759	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
78949	chr15	101288101	101288300	+	0	NA	intron (NR_135506, intron 1 of 5)	intron (NR_135506, intron 1 of 5)	7048	NR_135506	6627		NM_003090	ENSG00000131876	SNRPA1	Lea1|U2A'	small nuclear ribonucleoprotein polypeptide A'	protein-coding
94413	chr17	29019371	29020350	+	0	NA	Intergenic	CpG	-13420	NM_001290202	124925		NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
163672	chr3	52229821	52230300	+	0	NA	exon (NM_007284, exon 7 of 9)	exon (NM_007284, exon 7 of 9)	-3897	NM_017442	54106		NM_017442	ENSG00000239732	TLR9	CD289	toll like receptor 9	protein-coding
61107	chr13	48485471	48485830	+	0	NA	Intergenic	AluSx|SINE|Alu	-40981	NM_005767	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
31238	chr10	91894471	91894630	+	0	NA	Intergenic	LTR13A|LTR|ERVK	14936	NM_152429	143282		NM_152429	ENSG00000174721	FGFBP3	C10orf13|FGF-BP3	fibroblast growth factor binding protein 3	protein-coding
19701	chr1	181080171	181080580	+	0	NA	Intergenic	AluSx|SINE|Alu	-8325	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
125474	chr2	12416571	12416980	+	0	NA	intron (NR_110196, intron 4 of 5)	Tigger9b|DNA|TcMar-Tigger	217645	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
105585	chr18	266351	266450	+	0	NA	intron (NM_005131, intron 1 of 20)	MER5A1|DNA|hAT-Charlie	1647	NM_005131	9984		NM_005131	ENSG00000079134	THOC1	DFNA86|HPR1|P84|P84N5	THO complex subunit 1	protein-coding
196475	chr6	43575101	43576730	+	0	NA	promoter-TSS (NM_001291970)	promoter-TSS (NM_001291970)	123	NM_020750	57510		NM_020750	ENSG00000124571	XPO5	exp5	exportin 5	protein-coding
131946	chr2	99334321	99334580	+	0	NA	intron (NM_005783, intron 1 of 4)	Tigger3a|DNA|TcMar-Tigger	1883	NM_005783	10190		NM_005783	ENSG00000115514	TXNDC9	APACD|PHLP3	thioredoxin domain containing 9	protein-coding
67384	chr14	69779001	69780300	+	0	NA	intron (NM_003049, intron 2 of 4)	FLAM_C|SINE|Alu	-11937	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
14764	chr1	146031251	146031550	+	0	NA	Intergenic	AluSz6|SINE|Alu	-9665	NM_145277	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
97754	chr17	44439501	44439700	+	0	NA	intron (NM_001304942, intron 2 of 6)	intron (NM_001304942, intron 2 of 6)	-2749	NM_001304943	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
93556	chr17	19074451	19074930	+	0	NA	Intergenic	AluJr|SINE|Alu	-10554	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
35981	chr11	2862721	2862980	+	0	NA	Intergenic	CpG	-1281	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
41917	chr11	67283571	67284000	+	0	NA	intron (NM_001619, intron 16 of 20)	intron (NM_001619, intron 16 of 20)	-5518	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
31989	chr10	100830301	100830980	+	0	NA	TTS (NM_000278)	TTS (NM_000278)	-82323	NM_018121	55719		NM_018121	ENSG00000119906	SLF2	ATELS1|C10orf6|FAM178A	SMC5-SMC6 complex localization factor 2	protein-coding
100406	chr17	60421351	60422450	+	0	NA	promoter-TSS (NM_181707)	promoter-TSS (NM_181707)	-589	NM_181707	124773		NM_181707	ENSG00000141371	CHCT1	C17orf64	CHD1 helical C-terminal domain containing 1	protein-coding
4149	chr1	19347451	19347750	+	0	NA	intron (NM_001206540, intron 6 of 9)	intron (NM_001206540, intron 6 of 9)	35274	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
208461	chr7	66984951	66985050	+	0	NA	Intergenic	L1ME4b|LINE|L1	10586	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
222462	chr8	139704801	139705000	+	0	NA	Intergenic	CpG-27595	-1777	NM_001282534	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
13875	chr1	117931721	117931980	+	0	NA	intron (NM_006784, intron 1 of 26)	intron (NM_006784, intron 1 of 26)	2111	NM_006784	10885		NM_006784	ENSG00000065183	WDR3	DIP2|UTP12	WD repeat domain 3	protein-coding
187310	chr5	141611671	141612430	+	0	NA	intron (NM_005219, intron 1 of 27)	AluSq2|SINE|Alu	6950	NM_005219	1729		NM_005219	ENSG00000131504	DIAPH1	DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1|mDia1	diaphanous related formin 1	protein-coding
182955	chr5	71230971	71231130	+	0	NA	intron (NR_033968, intron 1 of 3).5	THE1B-int|LTR|ERVL-MaLR	-22919	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
119752	chr19	41282021	41282830	+	0	NA	intron (NM_144732, intron 7 of 14)	AluSp|SINE|Alu	17344	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
84683	chr16	30772471	30772800	+	0	NA	intron (NM_014771, intron 19 of 19)	L2b|LINE|L2	10313	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
188884	chr5	159732271	159732450	+	0	NA	Intergenic	Intergenic	139024	NR_109891	101927766		NR_109891	ENSG00000253311	LINC01847	-	long intergenic non-protein coding RNA 1847	ncRNA
7070	chr1	32015711	32016050	+	0	NA	intron (NR_073498, intron 1 of 8)	intron (NR_073498, intron 1 of 8)	2012	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
29800	chr10	72293171	72294380	+	0	NA	Intergenic	AluSx1|SINE|Alu	19851	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
149094	chr21	15857971	15858130	+	0	NA	intron (NM_001283041, intron 20 of 25)	intron (NM_001283041, intron 20 of 25)	128068	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
221643	chr8	125930401	125931630	+	0	NA	intron (NR_038447, intron 3 of 3)	MLT1G3|LTR|ERVL-MaLR	20182	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
139583	chr2	224960771	224960930	+	0	NA	intron (NM_014689, intron 1 of 55)	AluYg6|SINE|Alu	-13801	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
220546	chr8	100704571	100705150	+	0	NA	intron (NM_002568, intron 13 of 14)	intron (NM_002568, intron 13 of 14)	-1836	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
237925	chrX	132035771	132036150	+	0	NA	intron (NM_001042453, intron 2 of 10)	intron (NM_001042453, intron 2 of 10)	12371	NM_001042452	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
136780	chr2	181464351	181464450	+	0	NA	intron (NM_000885, intron 2 of 27)	L2c|LINE|L2	7014	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
115835	chr19	16514571	16515130	+	0	NA	intron (NM_001288834, intron 6 of 7)	intron (NM_001288834, intron 6 of 7)	18456	NM_032207	84167		NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
191326	chr6	7051421	7052950	+	0	NA	Intergenic	CpG	-55558	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
86055	chr16	57580951	57581050	+	0	NA	Intergenic	AluSq2|SINE|Alu	38357	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
42236	chr11	68099221	68100080	+	0	NA	intron (NM_212469, intron 1 of 10)	intron (NM_212469, intron 1 of 10)	21738	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
229678	chr9	124503451	124503750	+	0	NA	intron (NM_004959, intron 1 of 6)	CpG-28758	3799	NM_004959	2516		NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1	nuclear receptor subfamily 5 group A member 1	protein-coding
182605	chr5	66146201	66146800	+	0	NA	intron (NM_139168, intron 1 of 12)	intron (NM_139168, intron 1 of 12)	1665	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
144315	chr20	34871171	34871330	+	0	NA	intron (NM_178026, intron 1 of 14)	intron (NM_178026, intron 1 of 14)	1606	NM_178026	2686		NM_178025	ENSG00000131067	GGT7	D20S101|GGT4|GGTL3|GGTL5	gamma-glutamyltransferase 7	protein-coding
101238	chr17	66200671	66201180	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8792	NM_001199165	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
24404	chr1	243230851	243231150	+	0	NA	intron (NM_001042405, intron 1 of 18).2	L1M4|LINE|L1	24281	NM_014812	9859		NM_014812	ENSG00000143702	CEP170	FAM68A|KAB|KIAA0470	centrosomal protein 170	protein-coding
152163	chr22	20060901	20061480	+	0	NA	intron (NM_001283215, intron 6 of 6)	intron (NM_001283215, intron 6 of 6)	-19042	NM_001190326	54487		NM_022720	ENSG00000128191	DGCR8	C22orf12|DGCRK6|Gy1|pasha	DGCR8 microprocessor complex subunit	protein-coding
169151	chr3	156509551	156510250	+	0	NA	intron (NM_172160, intron 8 of 13)	intron (NM_172160, intron 8 of 13)	44225	NM_001308205	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
130299	chr2	84918301	84918500	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	12744	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
97274	chr17	43024451	43025850	+	0	NA	promoter-TSS (NM_005440)	promoter-TSS (NM_005440)	-81	NM_005440	8153		NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
181814	chr5	52744951	52745330	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-42776	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
61309	chr13	50304371	50304730	+	0	NA	intron (NR_109974, intron 2 of 6)	L1PA15|LINE|L1	132532	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
29461	chr10	70481851	70482150	+	0	NA	intron (NM_014431, intron 1 of 19)	MIRb|SINE|MIR	3233	NM_014431	27143		NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	phosphatase domain containing paladin 1	protein-coding
65301	chr14	50080621	50081000	+	0	NA	intron (NR_131171, intron 2 of 8)	AluSx1|SINE|Alu	24233	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
200297	chr6	132818421	132819180	+	0	NA	Intergenic	Intergenic	1581	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
161692	chr3	43473601	43473800	+	0	NA	intron (NM_001346467, intron 12 of 13)	MER20|DNA|hAT-Charlie	-121738	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
209514	chr7	76996001	76996200	+	0	NA	intron (NR_023383, intron 2 of 10)	intron (NR_023383, intron 2 of 10)	15278	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
28852	chr10	62619151	62619600	+	0	NA	Intergenic	Intergenic	-185345	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
211466	chr7	105097551	105097850	+	0	NA	intron (NM_182931, intron 15 of 26)	intron (NM_182931, intron 15 of 26)	83495	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
37904	chr11	34072901	34073100	+	0	NA	intron (NM_203364, intron 4 of 17)	Tigger3a|DNA|TcMar-Tigger	21269	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
170079	chr3	182969071	182969430	+	0	NA	intron (NM_001308101, intron 1 of 6)	intron (NM_001308101, intron 1 of 6)	11288	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
46540	chr11	128469571	128470480	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	52285	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
225426	chr9	35068101	35068700	+	0	NA	intron (NM_007126, intron 1 of 16)	intron (NM_007126, intron 1 of 16)	3908	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
65972	chr14	56474501	56474730	+	0	NA	Intergenic	Intergenic	-39716	NR_135241	101927690		NR_135241	ENSG00000258803	LOC101927690	-	uncharacterized LOC101927690	ncRNA
100094	chr17	58316321	58316580	+	0	NA	exon (NM_024418, exon 14 of 31)	exon (NM_024418, exon 14 of 31)	-9000	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
10798	chr1	77687401	77688080	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-4313	NM_001308237	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
110868	chr19	2622301	2623200	+	0	NA	intron (NM_052847, intron 2 of 4)	CpG	-7965	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
107888	chr18	56650521	56652050	+	0	NA	promoter-TSS (NM_015285)	promoter-TSS (NM_015285)	-74	NM_015285	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
11096	chr1	85299971	85300130	+	0	NA	Intergenic	MIRb|SINE|MIR	-23418	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
221744	chr8	127734901	127735700	+	0	NA	promoter-TSS (NM_002467)	promoter-TSS (NM_002467)	-134	NM_001354870	4609		NM_002467	ENSG00000136997	MYC	MRTL|MYCC|bHLHe39|c-Myc	MYC proto-oncogene, bHLH transcription factor	protein-coding
6661	chr1	29121151	29122010	+	0	NA	exon (NM_001003682, exon 2 of 2)	exon (NM_001003682, exon 2 of 2)	921	NM_001171868	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
182861	chr5	69708101	69708300	+	0	NA	intron (NR_027386, intron 1 of 5)	L1PA16|LINE|L1	2327	NR_027386	653188		NR_027386	ENSG00000290560	GUSBP3	GUSBP1|SMA3	GUSB pseudogene 3	pseudo
178392	chr4	147160971	147161150	+	0	NA	Intergenic	Intergenic	183657	NR_031662	100313938		NR_031662	ENSG00000221369	MIR548G	MIRN548G|hsa-mir-548g	microRNA 548g	ncRNA
235300	chrX	42495071	42495430	+	0	NA	Intergenic	Intergenic	282913	NM_025210	80316		NM_025210	ENSG00000102055	PPP1R2C	I-4|PPP1R2P9	PPP1R2C family member C	protein-coding
133670	chr2	127072201	127072600	+	0	NA	intron (NM_139345, intron 2 of 15)	intron (NM_139345, intron 2 of 15)	9665	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
106116	chr18	9182621	9183080	+	0	NA	intron (NM_001204056, intron 2 of 11)	L2|LINE|L2	45287	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
112738	chr19	7352221	7352480	+	0	NA	intron (NM_001367823, intron 1 of 28)	L1MEg|LINE|L1	3413	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
233176	chr9	137190451	137190830	+	0	NA	TTS (NM_003731)	TTS (NM_003731)	1964	NM_003731	8636		NM_003731	ENSG00000176101	SSNA1	N14|NA-14|NA14	SS nuclear autoantigen 1	protein-coding
206610	chr7	35819551	35819850	+	0	NA	intron (NM_001788, intron 1 of 12)	L1MB7|LINE|L1	18481	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
227775	chr9	93121451	93121550	+	0	NA	TTS (NM_004148)	TTS (NM_004148)	12751	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
18575	chr1	163321001	163322330	+	0	NA	promoter-TSS (NM_145697)	promoter-TSS (NM_145697)	126	NR_045630	127814295		NR_045630	ENSG00000232995	LOC127814295	-	uncharacterized LOC127814295	ncRNA
98856	chr17	48459871	48460300	+	0	NA	intron (NR_110804, intron 5 of 5)	L3b|LINE|CR1	15252	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
180731	chr5	31761751	31762050	+	0	NA	intron (NM_178140, intron 1 of 24)	MSTA|LTR|ERVL-MaLR	122769	NM_178140	23037		NM_015022	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
41652	chr11	66544751	66544850	+	0	NA	intron (NM_207340, intron 1 of 2)	intron (NM_207340, intron 1 of 2)	1248	NM_001348571	254359		NM_207340	ENSG00000174165	ZDHHC24	-	zinc finger DHHC-type containing 24	protein-coding
110896	chr19	2720471	2720630	+	0	NA	intron (NM_145173, intron 1 of 1)	intron (NM_145173, intron 1 of 1)	822	NM_145173	148252		NM_145173	ENSG00000176490	DIRAS1	Di-Ras1|GBTS1|RIG	DIRAS family GTPase 1	protein-coding
224571	chr9	19925821	19926680	+	0	NA	Intergenic	Intergenic	-137213	NM_001193288	25769		NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
150816	chr21	43961221	43961680	+	0	NA	intron (NM_020132, intron 3 of 9)	intron (NM_020132, intron 3 of 9)	36052	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
30940	chr10	87341321	87343730	+	0	NA	promoter-TSS (NR_024397)	promoter-TSS (NR_024397)	33	NR_024397	728190		NR_024397	ENSG00000223482	NUTM2A-AS1	FAM22A-AS1	NUTM2A antisense RNA 1	ncRNA
8460	chr1	40710071	40710230	+	0	NA	intron (NM_001308115, intron 1 of 9)	intron (NM_001308115, intron 1 of 9)	784	NM_001308115	4802		NM_014223	ENSG00000066136	NFYC	CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC	nuclear transcription factor Y subunit gamma	protein-coding
98391	chr17	46557571	46557980	+	0	NA	intron (NM_001039083, intron 3 of 3).2	intron (NM_001039083, intron 3 of 3).2	21916	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
50113	chr12	44875901	44877030	+	0	NA	promoter-TSS (NM_001145109)	promoter-TSS (NM_001145109)	-1	NM_006159	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
38292	chr11	43361721	43361980	+	0	NA	intron (NM_001376526, intron 1 of 22)	intron (NM_001376526, intron 1 of 22)	2930	NR_164824	55761		NM_018259	ENSG00000052841	TTC17	-	tetratricopeptide repeat domain 17	protein-coding
70783	chr14	103519421	103519800	+	0	NA	TTS (NM_001362531)	TTS (NM_001362531)	3220	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
201977	chr6	152233951	152234350	+	0	NA	intron (NM_033071, intron 110 of 145)	intron (NM_033071, intron 110 of 145)	-48772	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
94849	chr17	31497301	31498650	+	0	NA	intron (NM_001346748, intron 1 of 12)	intron (NM_001346748, intron 1 of 12)	9867	NM_001346747	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
131979	chr2	100262751	100263100	+	0	NA	Intergenic	Intergenic	54671	NR_103730	150577		NM_001102655	ENSG00000232084	LINC01104	-	long intergenic non-protein coding RNA 1104	ncRNA
208338	chr7	66413151	66414250	+	0	NA	Intergenic	CpG	-13292	NR_026873	285908		NM_181722	ENSG00000179406	LINC00174	NCRNA00174	long intergenic non-protein coding RNA 174	ncRNA
95876	chr17	38867051	38868030	+	0	NA	Intergenic	Intergenic	-2319	NM_001271608	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
150531	chr21	42976451	42976750	+	0	NA	intron (NM_001320694, intron 1 of 10)	Tigger1|DNA|TcMar-Tigger	2038	NM_004571	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
15555	chr1	150545351	150545850	+	0	NA	Intergenic	Intergenic	-3808	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
178143	chr4	142294451	142295330	+	0	NA	intron (NR_169617, intron 7 of 22)	intron (NR_169617, intron 7 of 22)	10942	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
87796	chr16	75463701	75465130	+	0	NA	promoter-TSS (NM_001304997)	promoter-TSS (NM_001304997)	28	NM_001304997	124491		NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
83594	chr16	28173621	28174080	+	0	NA	intron (NM_001270940, intron 5 of 24)	intron (NM_001270940, intron 5 of 24)	38115	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
135011	chr2	153871671	153872230	+	0	NA	promoter-TSS (NM_001376392)	promoter-TSS (NM_001376392)	28	NM_001376400	114805		NM_052917	ENSG00000144278	GALNT13	GalNAc-T13|LINC01850	polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
85913	chr16	57082201	57082930	+	0	NA	non-coding (NR_169515, exon 48 of 48)	non-coding (NR_169515, exon 48 of 48)	-10018	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
71278	chr14	105252021	105252850	+	0	NA	intron (NM_001242788, intron 4 of 16)	intron (NM_001242788, intron 4 of 16)	-3031	NM_001242789	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
40155	chr11	62864501	62864900	+	0	NA	intron (NM_001012664, intron 1 of 9)	AluY|SINE|Alu	8591	NM_001012664	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
128627	chr2	61328721	61328980	+	0	NA	intron (NM_014709, intron 20 of 79)	intron (NM_014709, intron 20 of 79)	88527	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
140530	chr2	233239971	233240230	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-11471	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
157367	chr22	44703651	44703750	+	0	NA	intron (NM_181334, intron 1 of 14)	intron (NM_181334, intron 1 of 14)	1496	NM_181333	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
166850	chr3	123229201	123229430	+	0	NA	intron (NM_012430, intron 4 of 6)	L1MB7|LINE|L1	27372	NM_012430	26984		NM_012430	ENSG00000121542	SEC22A	SEC22L2	SEC22 homolog A, vesicle trafficking protein	protein-coding
168576	chr3	149003851	149004250	+	0	NA	intron (NM_001184720, intron 4 of 6)	intron (NM_001184720, intron 4 of 6)	12510	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
43562	chr11	83001921	83002380	+	0	NA	intron (NM_001286060, intron 1 of 4)	intron (NM_001286060, intron 1 of 4)	32124	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
106634	chr18	22429521	22429980	+	0	NA	Intergenic	Intergenic	-11835	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
58536	chr12	132235721	132236680	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-30172	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
231072	chr9	129666851	129667150	+	0	NA	intron (NM_016307, intron 1 of 3)	intron (NM_016307, intron 1 of 3)	1353	NM_016307	51450		NM_016307	ENSG00000167157	PRRX2	PMX2|PRX2	paired related homeobox 2	protein-coding
49110	chr12	14768221	14768480	+	0	NA	Intergenic	Intergenic	2781	NM_175054	121504		NM_175054	ENSG00000197837	H4C16	H4-16|H4/p|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST4H4	H4 histone 16	protein-coding
180959	chr5	35671151	35671850	+	0	NA	TTS (NM_144722)	TTS (NM_144722)	53637	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
34040	chr10	124731351	124731830	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	12788	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
200122	chr6	130215001	130216330	+	0	NA	intron (NM_001258275, intron 4 of 13)	intron (NM_001258275, intron 4 of 13)	220	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
70821	chr14	103604071	103604430	+	0	NA	Intergenic	AluY|SINE|Alu	-24938	NM_005552	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
68952	chr14	91403921	91404430	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	13645	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
64567	chr14	24665371	24666130	+	0	NA	Intergenic	Intergenic	-31560	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
142817	chr20	16708651	16709530	+	0	NA	Intergenic	Intergenic	-20936	NM_198220	6629		NM_003092	ENSG00000125870	SNRPB2	Msl1|U2B''	small nuclear ribonucleoprotein polypeptide B2	protein-coding
38561	chr11	45929801	45931280	+	0	NA	non-coding (NR_165446, exon 18 of 18)	non-coding (NR_165446, exon 18 of 18)	7884	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
25872	chr10	11252451	11252750	+	0	NA	intron (NM_001326330, intron 4 of 12)	intron (NM_001326330, intron 4 of 12)	87570	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
82300	chr16	15638051	15638350	+	0	NA	intron (NM_001184998, intron 2 of 26).2	intron (NM_001184998, intron 2 of 26).2	4954	NM_001184999	9665		NM_014647	ENSG00000166783	MARF1	KIAA0430|LKAP|LMKB|PPP1R34	meiosis regulator and mRNA stability factor 1	protein-coding
167271	chr3	128616851	128618430	+	0	NA	Intergenic	CpG	33178	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
43291	chr11	76151551	76151650	+	0	NA	Intergenic	L1MC5|LINE|L1	54902	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
180609	chr5	16466971	16467150	+	0	NA	Intergenic	Intergenic	-1260	NM_033414	90441		NM_033414	ENSG00000173545	ZNF622	ZPR9	zinc finger protein 622	protein-coding
70128	chr14	100259671	100260030	+	0	NA	intron (NM_003403, intron 1 of 4)	intron (NM_003403, intron 1 of 4)	-17507	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
170373	chr3	184637801	184638200	+	0	NA	Intergenic	L1M5|LINE|L1	74064	NM_022149	64110		NM_022149	ENSG00000177383	MAGEF1	MAGE-F1	MAGE family member F1	protein-coding
875	chr1	1631301	1632550	+	0	NA	promoter-TSS (NR_002946)	promoter-TSS (NR_002946)	-248	NM_006983	8510		NM_006983	ENSG00000189409	MMP23B	MIFR|MIFR-1|MMP22|MMP23A	matrix metallopeptidase 23B	protein-coding
69900	chr14	99450221	99450480	+	0	NA	intron (NM_032233, intron 6 of 12)	intron (NM_032233, intron 6 of 12)	30509	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
106733	chr18	23524821	23525280	+	0	NA	intron (NM_001276342, intron 10 of 17)	AluSp|SINE|Alu	21539	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
109530	chr19	855501	856050	+	0	NA	exon (NM_001972, exon 4 of 5)	exon (NM_001972, exon 4 of 5)	3472	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
77885	chr15	89087371	89089000	+	0	NA	promoter-TSS (NM_007011)	promoter-TSS (NM_007011)	-271	NM_007011	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
132295	chr2	105119071	105119230	+	0	NA	Intergenic	Intergenic	-16206	NR_110227	101927492		NR_110227	ENSG00000231851	MRPS9-AS1	UTAT33	MRPS9 antisense RNA 1	ncRNA
219031	chr8	65642371	65642600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2168	NM_001145839	9650		NM_014637	ENSG00000066855	MTFR1	CHPPR|FAM54A2	mitochondrial fission regulator 1	protein-coding
229351	chr9	120924001	120924330	+	0	NA	intron (NM_005658, intron 2 of 7)	MER46C|DNA|TcMar-Tigger	2631	NM_005658	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
219304	chr8	70071121	70071550	+	0	NA	promoter-TSS (NM_024504)	promoter-TSS (NM_024504)	-83	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
110437	chr19	1977721	1978280	+	0	NA	intron (NM_001319, intron 2 of 11)	intron (NM_001319, intron 2 of 11)	-23451	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
121729	chr19	47716651	47716950	+	0	NA	exon (NM_014601, exon 2 of 6)	exon (NM_014601, exon 2 of 6)	3378	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
145419	chr20	43448501	43449580	+	0	NA	Intergenic	L3|LINE|CR1	-8856	NR_034009	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
218695	chr8	58559771	58559930	+	0	NA	intron (NM_001007067, intron 1 of 8)	L1MB7|LINE|L1	6589	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
115769	chr19	16340651	16340750	+	0	NA	Intergenic	AluSz|SINE|Alu	15874	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
211498	chr7	105237051	105237550	+	0	NA	intron (NM_001350741, intron 2 of 16)	intron (NM_001350741, intron 2 of 16)	31777	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
172075	chr4	1034271	1034830	+	0	NA	Intergenic	Intergenic	22086	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
33679	chr10	119895051	119895150	+	0	NA	intron (NR_037771, intron 1 of 17)	intron (NR_037771, intron 1 of 17)	2370	NM_007190	11196		NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A|iPLA1A|iPLA1beta	SEC23 interacting protein	protein-coding
146623	chr20	50173801	50174000	+	0	NA	intron (NR_109943, intron 2 of 2)	AluYc3|SINE|Alu	1330	NR_109943	101927541		NR_109943	ENSG00000231742	LINC01273	-	long intergenic non-protein coding RNA 1273	ncRNA
185770	chr5	132370971	132371300	+	0	NA	intron (NM_003060, intron 1 of 9)	AluSc|SINE|Alu	-1219	NR_110997	553103		NR_110997	ENSG00000233006	MIR3936HG	SLC22A5-AS1	MIR3936 host gene	ncRNA
138123	chr2	202292571	202292730	+	0	NA	promoter-TSS (NR_003031)	promoter-TSS (NR_003031)	-401	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
230074	chr9	127447371	127448100	+	0	NA	TTS (NM_000976)	TTS (NM_000976)	902	NR_002449	26783		NR_002449	ENSG00000201302	SNORA65	RNU65|U65	small nucleolar RNA, H/ACA box 65	snoRNA
87592	chr16	73071451	73071550	+	0	NA	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	-12479	NM_001164766	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
166301	chr3	112569021	112569480	+	0	NA	exon (NM_001348907, exon 3 of 7)	exon (NM_001348907, exon 3 of 7)	7205	NM_001348909	55032		NM_017945	ENSG00000138459	SLC35A5	-	solute carrier family 35 member A5	protein-coding
201124	chr6	142883451	142883750	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	61576	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
166034	chr3	108580221	108580630	+	0	NA	intron (NM_020890, intron 5 of 20)	intron (NM_020890, intron 5 of 20)	9013	NM_020890	57650		NM_020890	ENSG00000163507	CIP2A	KIAA1524|NOCIVA|p90	cellular inhibitor of PP2A	protein-coding
13365	chr1	113879851	113880150	+	0	NA	3' UTR (NM_001010922, exon 4 of 4)	3' UTR (NM_001010922, exon 4 of 4)	7581	NM_001010922	440603		NM_001010922	ENSG00000188761	BCL2L15	Bfk|C1orf178	BCL2 like 15	protein-coding
118171	chr19	35033301	35034530	+	0	NA	exon (NM_199037, exon 3 of 3)	exon (NM_199037, exon 3 of 3)	2644	NM_001321605	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
86989	chr16	68226471	68226630	+	0	NA	3' UTR (NM_004555, exon 11 of 11)	3' UTR (NM_004555, exon 11 of 11)	6949	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
193540	chr6	30603401	30604380	+	0	NA	intron (NM_001376195, intron 14 of 19).6	Penelope1_Vert|LINE|Penelope	13353	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
139055	chr2	218727871	218728180	+	0	NA	intron (NM_014640, intron 2 of 19)	L1M3f|LINE|L1	17190	NM_014640	9654		NM_014640	ENSG00000135912	TTLL4	-	tubulin tyrosine ligase like 4	protein-coding
28918	chr10	63168001	63168400	+	0	NA	intron (NM_001322258, intron 24 of 24)	intron (NM_001322258, intron 24 of 24)	34872	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
103196	chr17	77464151	77464250	+	0	NA	intron (NM_001293698, intron 1 of 9)	AluSx1|SINE|Alu	10173	NM_001293698	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
47564	chr12	4322671	4322830	+	0	NA	intron (NM_020375, intron 1 of 5)	intron (NM_020375, intron 1 of 5)	1537	NM_020375	57103		NM_020375	ENSG00000078237	TIGAR	C12orf5|FR2BP	TP53 induced glycolysis regulatory phosphatase	protein-coding
43766	chr11	86240701	86241200	+	0	NA	Intergenic	L2a|LINE|L2	-3434	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
155327	chr22	38216221	38216480	+	0	NA	3' UTR (NM_012323, exon 3 of 3)	3' UTR (NM_012323, exon 3 of 3)	8370	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
93625	chr17	19161221	19162080	+	0	NA	intron (NR_160286, intron 1 of 3).2	intron (NR_160286, intron 1 of 3).2	974	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
203690	chr7	1029801	1030080	+	0	NA	intron (NM_032350, intron 2 of 4)	intron (NM_032350, intron 2 of 4)	-1508	NR_146965	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
86238	chr16	58176701	58177520	+	0	NA	intron (NM_001896, intron 4 of 11)	intron (NM_001896, intron 4 of 11)	20996	NM_001896	1459		NM_001896	ENSG00000070770	CSNK2A2	CK2A2|CK2alpha'|CSNK2A1	casein kinase 2 alpha 2	protein-coding
181257	chr5	39216551	39216650	+	0	NA	intron (NM_001349333, intron 1 of 19)	L1PA10|LINE|L1	2963	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
155243	chr22	37941501	37941700	+	0	NA	3' UTR (NM_033386, exon 16 of 16)	3' UTR (NM_033386, exon 16 of 16)	12001	NM_032561	84645		NM_032561	ENSG00000128346	C22orf23	EVG1|dJ1039K5.6	chromosome 22 open reading frame 23	protein-coding
168772	chr3	151278251	151278750	+	0	NA	promoter-TSS (NM_014879)	promoter-TSS (NM_014879)	42	NM_014879	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
133808	chr2	127809451	127809550	+	0	NA	intron (NM_001006623, intron 1 of 7)	AluSx1|SINE|Alu	1671	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
13390	chr1	113943071	113943450	+	0	NA	intron (NM_198268, intron 2 of 15)	L1MB4|LINE|L1	-7885	NM_198269	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
45352	chr11	118242671	118243030	+	0	NA	intron (NM_198275, intron 1 of 5)	L2b|LINE|L2	9515	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
50326	chr12	46934071	46934250	+	0	NA	Intergenic	Intergenic	-108163	NM_001143824	55089		NM_018018	ENSG00000139209	SLC38A4	ATA3|NAT3|PAAT|SNAT4	solute carrier family 38 member 4	protein-coding
229800	chr9	125361871	125362100	+	0	NA	intron (NR_148733, intron 26 of 26)	intron (NR_148733, intron 26 of 26)	100159	NM_001354295	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
76420	chr15	74783101	74783930	+	0	NA	intron (NM_001127190, intron 2 of 13)	MIR3|SINE|MIR	1431	NM_004383	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
184528	chr5	102231801	102232200	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	64284	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
87261	chr16	69965221	69965680	+	0	NA	Intergenic	CpG	14337	NM_001370523	348174		NM_182619	ENSG00000157322	CLEC18A	MRCL|MRCL1|MRLP2	C-type lectin domain family 18 member A	protein-coding
203946	chr7	1548171	1549530	+	0	NA	intron (NM_001097620, intron 6 of 8)	intron (NM_001097620, intron 6 of 8)	7355	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
2300	chr1	8984621	8984880	+	0	NA	Intergenic	AluSx|SINE|Alu	38882	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
36210	chr11	3477121	3477480	+	0	NA	promoter-TSS (NR_169525)	promoter-TSS (NR_169525)	-227	NR_169525	105376526		NR_169525		LOC105376526	-	uncharacterized LOC105376526	ncRNA
198618	chr6	107738821	107739630	+	0	NA	intron (NM_001286408, intron 4 of 6)	intron (NM_001286408, intron 4 of 6)	-7075	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
215182	chr7	155713371	155713530	+	0	NA	intron (NM_053043, intron 8 of 17)	L2a|LINE|L2	68789	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
191415	chr6	10381371	10381530	+	0	NA	Intergenic	CpG	-23052	NR_145448	109729173		NR_145448	ENSG00000285278	TFAP2A-AS2	HIPSTR	TFAP2A antisense RNA 2	ncRNA
148048	chr20	63234521	63235050	+	0	NA	Intergenic	Intergenic	-1120	NM_139317	79444		NM_022161	ENSG00000101197	BIRC7	KIAP|LIVIN|ML-IAP|MLIAP|RNF50	baculoviral IAP repeat containing 7	protein-coding
58732	chr12	132593221	132593480	+	0	NA	Intergenic	L1MB5|LINE|L1	11353	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
146724	chr20	50596551	50596900	+	0	NA	intron (NM_080829, intron 14 of 21)	intron (NM_080829, intron 14 of 21)	10939	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
117729	chr19	29587171	29588050	+	0	NA	Intergenic	Intergenic	-18673	NM_006627	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
110341	chr19	1877421	1878000	+	0	NA	intron (NM_001130111, intron 3 of 4)	CpG-13117	7786	NM_001130111	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
130277	chr2	84875951	84876050	+	0	NA	intron (NM_001307978, intron 1 of 4)	AluJo|SINE|Alu	5084	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
200279	chr6	132750271	132751350	+	0	NA	intron (NR_110146, intron 2 of 3)	intron (NR_110146, intron 2 of 3)	7094	NM_004665	8875		NM_004665	ENSG00000112303	VNN2	FOAP-4|GPI-80	vanin 2	protein-coding
144426	chr20	35414451	35414550	+	0	NA	Intergenic	L1MA8|LINE|L1	-2358	NM_199487	55245		NM_018244	ENSG00000101019	UQCC1	BFZB|C20orf44|CBP3|UQCC	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding
65609	chr14	52263301	52263500	+	0	NA	Intergenic	Intergenic	-4298	NM_000953	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
195252	chr6	36385371	36385830	+	0	NA	exon (NM_016135, exon 2 of 8)	exon (NM_016135, exon 2 of 8)	2069	NM_001207038	51513		NM_016135	ENSG00000010030	ETV7	TEL-2|TEL2|TELB	ETS variant transcription factor 7	protein-coding
227498	chr9	91196451	91196550	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	77438	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
61601	chr13	73212401	73212600	+	0	NA	Intergenic	AluJb|SINE|Alu	153495	NM_001730	688		NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	KLF transcription factor 5	protein-coding
213822	chr7	141533071	141533630	+	0	NA	Intergenic	Intergenic	-18060	NM_018238	55750		NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
382	chr1	1040001	1041430	+	0	NA	exon (NM_001364727, exon 3 of 36)	exon (NM_001364727, exon 3 of 36)	6722	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
225315	chr9	34591561	34592200	+	0	NA	Intergenic	CpG-28203	-1740	NM_001207011	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
72026	chr15	28109151	28109450	+	0	NA	Intergenic	AluY|SINE|Alu	-9985	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
12504	chr1	108079371	108080000	+	0	NA	Intergenic	L3|LINE|CR1	113150	NM_213651	29957		NM_013386	ENSG00000085491	SLC25A24	APC1|SCAMC-1|SCAMC1	solute carrier family 25 member 24	protein-coding
170097	chr3	183098471	183099840	+	0	NA	promoter-TSS (NR_120640)	promoter-TSS (NR_120640)	88	NR_120640	56922		NM_020166	ENSG00000078070	MCCC1	MCC-B|MCCA|MCCCalpha	methylcrotonyl-CoA carboxylase subunit 1	protein-coding
194008	chr6	31794071	31794870	+	0	NA	intron (NM_006295, intron 2 of 29).4	intron (NM_006295, intron 2 of 29).4	1282	NM_006295	7407		NM_006295	ENSG00000204394	VARS1	G7A|NDMSCA|VARS|VARS2	valyl-tRNA synthetase 1	protein-coding
182348	chr5	59275671	59276030	+	0	NA	5' UTR (NM_001197220, exon 1 of 15)	5' UTR (NM_001197220, exon 1 of 15)	265	NM_001197220	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
191688	chr6	13573901	13575650	+	0	NA	5' UTR (NM_001376814, exon 1 of 8)	intron (NM_001376806, intron 1 of 10)	174	NM_001376804	23408		NM_012241	ENSG00000124523	SIRT5	SIR2L5	sirtuin 5	protein-coding
198485	chr6	106312801	106313400	+	0	NA	intron (NR_104402, intron 1 of 5)	L2a|LINE|L2	3166	NR_104402	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
119556	chr19	40609301	40611580	+	0	NA	intron (NM_001042544, intron 14 of 32)	intron (NM_001042544, intron 14 of 32)	9071	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
176637	chr4	99855701	99856550	+	0	NA	intron (NM_014395, intron 4 of 8)	L2a|LINE|L2	38302	NM_021970	8649		NM_021970	ENSG00000109270	LAMTOR3	MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding
235965	chrX	53547451	53547950	+	0	NA	exon (NM_031407, exon 68 of 84)	exon (NM_031407, exon 68 of 84)	8641	NR_029513	407054		NR_029513	ENSG00000271886	MIR98	MIRLET7L|MIRN98|hsa-mir-98|miR-98	microRNA 98	ncRNA
101092	chr17	64965421	64966430	+	0	NA	TTS (NR_026903)	TTS (NR_026903)	9660	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
65063	chr14	39382271	39382430	+	0	NA	intron (NM_001354154, intron 23 of 23)	MER4-int|LTR|ERV1	50150	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
199269	chr6	111860351	111861100	+	0	NA	intron (NM_002037, intron 1 of 13)	intron (NM_002037, intron 1 of 13)	12346	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
174893	chr4	48923301	48923500	+	0	NA	Intergenic	L1PA3|LINE|L1	-16572	NM_152398	132299		NM_152398	ENSG00000145247	OCIAD2	-	OCIA domain containing 2	protein-coding
75267	chr15	65028051	65028450	+	0	NA	intron (NM_139242, intron 1 of 8)	AluJb|SINE|Alu	1389	NM_139242	123263		NM_139242	ENSG00000103707	MTFMT	COXPD15|FMT1|MC1DN27	mitochondrial methionyl-tRNA formyltransferase	protein-coding
220742	chr8	102197121	102197880	+	0	NA	Intergenic	Intergenic	41331	NM_001172477	50484		NM_015713	ENSG00000048392	RRM2B	MTDPS8A|MTDPS8B|P53R2|RCDFRD	ribonucleotide reductase regulatory TP53 inducible subunit M2B	protein-coding
217643	chr8	30070401	30070600	+	0	NA	intron (NM_001284239, intron 1 of 4)	L1ME3E|LINE|L1	12564	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
202275	chr6	157056271	157056630	+	0	NA	intron (NM_001363725, intron 2 of 17)	intron (NM_001363725, intron 2 of 17)	20023	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
154728	chr22	36458771	36459280	+	0	NA	Intergenic	AluSx1|SINE|Alu	22615	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
227466	chr9	91047421	91048100	+	0	NA	Intergenic	Intergenic	27372	NR_033912	100129316		NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA
80517	chr16	2755301	2755730	+	0	NA	intron (NM_016333, intron 1 of 14)	intron (NM_016333, intron 1 of 14)	2877	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
231147	chr9	129866071	129867980	+	0	NA	intron (NM_001110303, intron 10 of 25)	intron (NM_001110303, intron 10 of 25)	-2580	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
196330	chr6	43164101	43164500	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	-6969	NM_003131	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
224419	chr9	15191451	15191650	+	0	NA	intron (NM_152574, intron 9 of 19)	intron (NM_152574, intron 9 of 19)	58668	NM_001168342	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
165115	chr3	71652951	71653050	+	0	NA	Intergenic	Intergenic	-69022	NM_001244810	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
101149	chr17	65052051	65052830	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluSq|SINE|Alu	3334	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
7676	chr1	35777221	35777480	+	0	NA	Intergenic	L2c|LINE|L2	-7372	NM_001330490	63967		NM_022111	ENSG00000092853	CLSPN	-	claspin	protein-coding
15448	chr1	150319221	150319530	+	0	NA	Intergenic	L1MB4|LINE|L1	-2093	NR_146767	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
67343	chr14	69667351	69668480	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	56319	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
33902	chr10	124534201	124534630	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	72592	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
93272	chr17	18087071	18088630	+	0	NA	promoter-TSS (NM_001388)	promoter-TSS (NM_001388)	-98	NM_001330144	1819		NM_001388	ENSG00000108591	DRG2	-	developmentally regulated GTP binding protein 2	protein-coding
160793	chr3	32963801	32964680	+	0	NA	Intergenic	LTR101_Mam|LTR|ERVL	12596	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
33371	chr10	117352901	117353100	+	0	NA	intron (NM_173791, intron 1 of 4)	LTR8A|LTR|ERV1	22440	NM_173791	118987		NM_173791	ENSG00000165650	PDZD8	IDDADF|PDZK8	PDZ domain containing 8	protein-coding
79163	chr16	284901	285400	+	0	NA	exon (NM_006849, exon 5 of 11)	exon (NM_006849, exon 5 of 11)	1986	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
217744	chr8	30733171	30733680	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-5426	NM_001195103	2936		NM_000637	ENSG00000104687	GSR	GR|GSRD|HEL-75|HEL-S-122m	glutathione-disulfide reductase	protein-coding
166978	chr3	125671071	125671850	+	0	NA	Intergenic	AluSc|SINE|Alu	-75963	NM_022776	114885		NM_022776	ENSG00000144909	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein like 11	protein-coding
142254	chr20	3162771	3163580	+	0	NA	3' UTR (NM_001365618, exon 5 of 5)	3' UTR (NM_001365618, exon 5 of 5)	-3310	NM_001267584	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
193273	chr6	29974121	29974380	+	0	NA	promoter-TSS (NR_028032)	promoter-TSS (NR_028032)	-865	NR_028032	10255		NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9	ncRNA
68818	chr14	91262301	91263130	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-8835	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
98699	chr17	47938871	47939030	+	0	NA	intron (NR_103857, intron 1 of 2)	L2b|LINE|L2	2454	NR_103857	100506325		NR_103856	ENSG00000234494	SP2-AS1	-	SP2 antisense RNA 1	ncRNA
48901	chr12	12550101	12550500	+	0	NA	intron (NM_030640, intron 1 of 6)	intron (NM_030640, intron 1 of 6)	12563	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
16687	chr1	155199771	155200580	+	0	NA	intron (NM_007112, intron 14 of 22)	intron (NM_007112, intron 14 of 22)	4998	NR_030281	693235		NR_030281	ENSG00000284586	MIR92B	MIRN92B|hsa-mir-92b|mir-92b	microRNA 92b	ncRNA
48372	chr12	9440951	9441250	+	0	NA	intron (NR_033399, intron 2 of 26)	AluJo|SINE|Alu	7072	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
226101	chr9	62838001	62840050	+	0	NA	promoter-TSS (NR_135128)	promoter-TSS (NR_135128)	580	NR_024496	442421		NR_024496		PTGER4P2-CDK2AP2P2	-	PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene	pseudo
145571	chr20	44477221	44477500	+	0	NA	intron (NM_001039199, intron 1 of 4)	L2b|LINE|L2	1486	NM_001261839	79183		NM_024331	ENSG00000124120	TTPAL	C20orf121	alpha tocopherol transfer protein like	protein-coding
230938	chr9	129410121	129411130	+	0	NA	Intergenic	(CACCAT)n|Simple_repeat|Simple_repeat	73702	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
216154	chr8	11563921	11565300	+	0	NA	TTS (NM_001330465).2	TTS (NM_001330465).2	-11925	NR_040035	83655		NM_054029	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
92297	chr17	8111601	8111800	+	0	NA	intron (NM_021628, intron 7 of 15)	MIRb|SINE|MIR	6603	NM_001369446	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
23083	chr1	226651271	226651430	+	0	NA	intron (NM_002221, intron 2 of 7)	MIRb|SINE|MIR	23718	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
189621	chr5	176016621	176018130	+	0	NA	Intergenic	LTR87|LTR|ERVL?	44680	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
235851	chrX	50162351	50162650	+	0	NA	Intergenic	LTR12C|LTR|ERV1	37872	NM_139289	8852		NM_003886	ENSG00000147081	AKAP4	AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82	A-kinase anchoring protein 4	protein-coding
201999	chr6	152553771	152554130	+	0	NA	intron (NM_033071, intron 2 of 145)	LTR16|LTR|ERVL	82901	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
131997	chr2	100578951	100579580	+	0	NA	Intergenic	Intergenic	16272	NM_024065	79031		NM_024065	ENSG00000115539	PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin like 3	protein-coding
211775	chr7	107559471	107559930	+	0	NA	intron (NM_001379511, intron 1 of 20)	L3|LINE|CR1	4220	NM_001379516	10466		NM_006348	ENSG00000164597	COG5	CDG2I|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding
44189	chr11	96263371	96264180	+	0	NA	intron (NM_032427, intron 1 of 4)	MIRc|SINE|MIR	-77663	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
34117	chr10	126948071	126948230	+	0	NA	intron (NM_001377548, intron 1 of 50)	intron (NM_001377548, intron 1 of 50)	42722	NM_001377556	1793		NM_001380	ENSG00000150760	DOCK1	DOCK180|ced5	dedicator of cytokinesis 1	protein-coding
49047	chr12	14389921	14390300	+	0	NA	intron (NM_181352, intron 1 of 14)	MER102a|DNA|hAT-Charlie	4829	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
196284	chr6	42983801	42985230	+	0	NA	promoter-TSS (NM_001270476)	promoter-TSS (NM_001270476)	-55	NM_180977	5528		NM_006245	ENSG00000112640	PPP2R5D	B56D|B56delta|HJS1|MRD35	protein phosphatase 2 regulatory subunit B'delta	protein-coding
10433	chr1	66214901	66215480	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-116918	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
160694	chr3	32321071	32321230	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	-70703	NM_181472	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
155570	chr22	38736771	38736930	+	0	NA	intron (NM_001199580, intron 18 of 18)	AluJo|SINE|Alu	18616	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
125285	chr2	10493101	10495000	+	0	NA	Intergenic	Intergenic	44322	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
103168	chr17	77432471	77433250	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-17889	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
180812	chr5	32421051	32421350	+	0	NA	intron (NR_144318, intron 2 of 18)	intron (NR_144318, intron 2 of 18)	23540	NM_016107	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
68111	chr14	75426771	75426930	+	0	NA	promoter-TSS (NM_001135047)	promoter-TSS (NM_001135047)	-874	NM_001135047	122953		NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
114376	chr19	12502271	12502430	+	0	NA	Intergenic	Intergenic	-17534	NM_152601	163051		NM_152601	ENSG00000242852	ZNF709	-	zinc finger protein 709	protein-coding
9967	chr1	54806801	54807800	+	0	NA	intron (NM_001110533, intron 2 of 9)	intron (NM_001110533, intron 2 of 9)	1237	NM_001110533	163747		NM_152607	ENSG00000162398	CIMAP2	C1orf177|LEM|LEXM	ciliary microtubule associated protein 2	protein-coding
177195	chr4	108202751	108202950	+	0	NA	Intergenic	AluY|SINE|Alu	30730	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
128452	chr2	55612651	55612950	+	0	NA	intron (NM_020463, intron 2 of 14)	AluY|SINE|Alu	4822	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
23276	chr1	227953551	227954230	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-5958	NM_003395	7483		NM_003395	ENSG00000143816	WNT9A	WNT14	Wnt family member 9A	protein-coding
102451	chr17	75696671	75696830	+	0	NA	intron (NR_126036, intron 4 of 9)	intron (NR_126036, intron 4 of 9)	-24709	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
2719	chr1	10655921	10656180	+	0	NA	intron (NM_017766, intron 8 of 15)	intron (NM_017766, intron 8 of 15)	140596	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
194464	chr6	33193101	33194530	+	0	NA	3' UTR (NM_001270401, exon 10 of 10)	3' UTR (NM_001270401, exon 10 of 10)	-1347	NM_080679	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
126063	chr2	25700051	25700830	+	0	NA	Intergenic	Intergenic	-26766	NM_001256304	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
235357	chrX	44352951	44353050	+	0	NA	Intergenic	Intergenic	-9328	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
198992	chr6	110911721	110911980	+	0	NA	Intergenic	AluJo|SINE|Alu	37066	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
27042	chr10	27099151	27099250	+	0	NA	intron (NM_014915, intron 1 of 33)	AluSq2|SINE|Alu	1294	NM_014915	22852		NM_014915	ENSG00000107890	ANKRD26	THC2|bA145E8.1	ankyrin repeat domain containing 26	protein-coding
105359	chr17	82643551	82643650	+	0	NA	intron (NM_019613, intron 2 of 9)	intron (NM_019613, intron 2 of 9)	4844	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
51798	chr12	53383951	53384250	+	0	NA	intron (NM_138473, intron 3 of 5)	AluY|SINE|Alu	3456	NM_003109	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
50096	chr12	44846621	44847080	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	28811	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
26105	chr10	13340421	13341230	+	0	NA	non-coding (NR_164738, exon 3 of 10)	non-coding (NR_164738, exon 3 of 10)	7468	NM_001375769	22929		NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
68450	chr14	81535351	81535650	+	0	NA	Intergenic	Intergenic	-1639	NM_001244984	6400		NM_005065	ENSG00000071537	SEL1L	Hrd3|PRO1063|SEL1-LIKE|SEL1L1	SEL1L adaptor subunit of SYVN1 ubiquitin ligase	protein-coding
82471	chr16	17173451	17173550	+	0	NA	intron (NM_022166, intron 5 of 11)	MER105|DNA|hAT-Charlie	38996	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
34319	chr10	132156371	132156730	+	0	NA	intron (NM_001323090, intron 19 of 23)	L2c|LINE|L2	-30398	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
213795	chr7	140916171	140916600	+	0	NA	intron (NM_001374244, intron 1 of 18)	intron (NM_001374244, intron 1 of 18)	7883	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
44387	chr11	102794551	102794650	+	0	NA	intron (NR_038390, intron 2 of 7)	intron (NR_038390, intron 2 of 7)	3560	NM_002421	4312		NM_002421	ENSG00000196611	MMP1	CLG|CLGN	matrix metallopeptidase 1	protein-coding
212544	chr7	128857851	128858150	+	0	NA	intron (NM_001458, intron 46 of 47)	intron (NM_001458, intron 46 of 47)	4626	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
200246	chr6	132298301	132298530	+	0	NA	intron (NM_015529, intron 10 of 11)	intron (NM_015529, intron 10 of 11)	103060	NM_015529	26002		NM_015529	ENSG00000079931	MOXD1	MOX|PRO5780|dJ248E1.1	monooxygenase DBH like 1	protein-coding
206917	chr7	38215421	38216530	+	0	NA	intron (NM_001363343, intron 5 of 8)	intron (NM_001363343, intron 5 of 8)	37730	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
220597	chr8	100907701	100909180	+	0	NA	Intergenic	MER52A|LTR|ERV1	42131	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
27554	chr10	32342601	32342800	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	4458	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
23756	chr1	232786901	232787250	+	0	NA	Intergenic	Intergenic	-18341	NM_019090	54627		NM_019090	ENSG00000212916	MAP10	KIAA1383|MTR120	microtubule associated protein 10	protein-coding
26498	chr10	18145051	18145150	+	0	NA	intron (NM_201571, intron 1 of 13)	intron (NM_201571, intron 1 of 13)	4676	NM_201571	783		NM_000724	ENSG00000165995	CACNB2	CAB2|CACNLB2|CAVB2|MYSB	calcium voltage-gated channel auxiliary subunit beta 2	protein-coding
35596	chr11	1751771	1752450	+	0	NA	TTS (NM_001909)	TTS (NM_001909)	-1515	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
136919	chr2	189751121	189751480	+	0	NA	intron (NR_148883, intron 7 of 8)	intron (NR_148883, intron 7 of 8)	-11480	NR_102429	101409258		NR_102429		OSGEPL1-AS1	-	OSGEPL1 antisense RNA 1	ncRNA
203979	chr7	1665601	1666650	+	0	NA	Intergenic	CpG	-21994	NM_001128636	392617		NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
133977	chr2	130755121	130755430	+	0	NA	promoter-TSS (NM_001105193)	promoter-TSS (NM_001105193)	-265	NM_152698	205147		NM_152698	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding
166586	chr3	118933351	118933650	+	0	NA	intron (NM_152538, intron 3 of 8)	(TA)n|Simple_repeat|Simple_repeat	-9576	NR_046230	100506765		NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA
121538	chr19	47238321	47238580	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5783	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
214324	chr7	149281601	149282580	+	0	NA	exon (NM_001195220, exon 6 of 6)	exon (NM_001195220, exon 6 of 6)	-3191	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
173144	chr4	6664101	6665030	+	0	NA	Intergenic	AluY|SINE|Alu	9316	NR_134665	105374366		NR_134664	ENSG00000251580	LINC02482	-	long intergenic non-protein coding RNA 2482	ncRNA
196766	chr6	45454251	45454550	+	0	NA	intron (NM_001278478, intron 3 of 5)	intron (NM_001278478, intron 3 of 5)	32125	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
25362	chr10	6408351	6408650	+	0	NA	intron (NM_001323267, intron 17 of 17)	AluSq2|SINE|Alu	58184	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
191293	chr6	6611471	6611830	+	0	NA	intron (NM_004271, intron 1 of 4)	intron (NM_004271, intron 1 of 4)	11176	NR_026970	285780		NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
69402	chr14	94051171	94052300	+	0	NA	intron (NM_020414, intron 8 of 8).2	MIRb|SINE|MIR	25395	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
229214	chr9	114894601	114895200	+	0	NA	intron (NM_001252290, intron 4 of 4)	intron (NM_001252290, intron 4 of 4)	35691	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
72396	chr15	31386551	31386650	+	0	NA	intron (NM_001302461, intron 1 of 1).3	Tigger1|DNA|TcMar-Tigger	59765	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
97046	chr17	42326351	42326850	+	0	NA	intron (NM_001369519, intron 14 of 23)	AluSg4|SINE|Alu	38544	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
15626	chr1	150628901	150630650	+	0	NA	promoter-TSS (NM_207168)	promoter-TSS (NM_207168)	-153	NM_207168	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
220411	chr8	100269971	100270330	+	0	NA	intron (NM_183419, intron 3 of 9)	intron (NM_183419, intron 3 of 9)	32043	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
84644	chr16	30720851	30721800	+	0	NA	exon (NM_006662, exon 21 of 34)	exon (NM_006662, exon 21 of 34)	10788	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
54996	chr12	96357271	96357630	+	0	NA	intron (NM_002595, intron 1 of 16)	AluJr4|SINE|Alu	42989	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
18603	chr1	165678321	165679230	+	0	NA	intron (NM_000696, intron 6 of 10)	L1MC4|LINE|L1	19787	NM_001365774	223		NM_000696	ENSG00000143149	ALDH9A1	ALDH4|ALDH7|ALDH9|E3|TMABA-DH|TMABADH|TMABALDH	aldehyde dehydrogenase 9 family member A1	protein-coding
63518	chr13	114313121	114313400	+	0	NA	Intergenic	L1MB3|LINE|L1	-1243	NM_001164145	283489		NM_032436	ENSG00000198824	CHAMP1	C13orf8|CAMP|CHAMP|MRD40|NEDHILD|ZNF828	chromosome alignment maintaining phosphoprotein 1	protein-coding
123727	chr19	55055871	55056030	+	0	NA	intron (NM_001145971, intron 3 of 6).10	AluSx1|SINE|Alu	7198	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
62707	chr13	102854571	102855150	+	0	NA	intron (NM_001204425, intron 12 of 22)	intron (NM_001204425, intron 12 of 22)	8828	NM_000123	2073		NM_000123	ENSG00000134899	ERCC5	COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC	ERCC excision repair 5, endonuclease	protein-coding
157348	chr22	44678521	44678780	+	0	NA	intron (NM_001017530, intron 1 of 7)	L2b|LINE|L2	1565	NM_001198721	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
115445	chr19	15326301	15326500	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluSz6|SINE|Alu	6139	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
96533	chr17	40351521	40352130	+	0	NA	intron (NM_000964, intron 4 of 8)	intron (NM_000964, intron 4 of 8)	-8689	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
114043	chr19	10960151	10961650	+	0	NA	promoter-TSS (NM_001128849)	promoter-TSS (NM_001128849)	-130	NM_001374457	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
357	chr1	1016301	1016830	+	0	NA	Intergenic	AluSz|SINE|Alu	3068	NM_005101	9636		NM_005101	ENSG00000187608	ISG15	G1P2|IFI15|IMD38|IP17|UCRP|hUCRP	ISG15 ubiquitin like modifier	protein-coding
55454	chr12	104605751	104606050	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	14267	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
129017	chr2	64869871	64870100	+	0	NA	Intergenic	Intergenic	-6354	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
30442	chr10	79066321	79066580	+	0	NA	non-coding (NR_015429, exon 2 of 8)	non-coding (NR_015429, exon 2 of 8)	998	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
93752	chr17	19950871	19951230	+	0	NA	intron (NM_007202, intron 4 of 14)	SVA_B|Retroposon|SVA	26778	NM_007202	11216		NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A-kinase anchoring protein 10	protein-coding
55232	chr12	101830071	101831290	+	0	NA	5' UTR (NM_024312, exon 1 of 21)	5' UTR (NM_024312, exon 1 of 21)	279	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
236012	chrX	54817271	54817630	+	0	NA	Intergenic	L2|LINE|L2	3080	NR_002953	677799		NR_002953	ENSG00000221716	SNORA11	SNORA11A|U107	small nucleolar RNA, H/ACA box 11	snoRNA
171926	chr4	867871	868030	+	0	NA	intron (NM_001318134, intron 17 of 24)	intron (NM_001318134, intron 17 of 24)	-41821	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
63382	chr13	114058721	114059180	+	0	NA	intron (NM_001320821, intron 2 of 25).2	AluJo|SINE|Alu	19005	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
13020	chr1	111200001	111200930	+	0	NA	5' UTR (NM_024901, exon 1 of 12)	5' UTR (NM_024901, exon 1 of 12)	181	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
209963	chr7	92686371	92686530	+	0	NA	intron (NM_001145306, intron 4 of 7)	L1PB1|LINE|L1	-96060	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
110525	chr19	2075421	2075930	+	0	NA	intron (NM_130807, intron 4 of 4)	intron (NM_130807, intron 4 of 4)	20651	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
103072	chr17	77285421	77286430	+	0	NA	intron (NM_001293695, intron 1 of 10)	intron (NM_001293695, intron 1 of 10)	-1966	NM_001113492	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
95366	chr17	35869521	35870130	+	0	NA	promoter-TSS (NM_001321395).2	promoter-TSS (NM_001321395).2	-934	NR_135630	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
77700	chr15	85669501	85669700	+	0	NA	intron (NM_007200, intron 13 of 36)	MIRb|SINE|MIR	49650	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
234758	chrX	23741571	23741730	+	0	NA	intron (NM_001033583, intron 1 of 14)	intron (NM_001033583, intron 1 of 14)	1626	NM_001330259	23597		NM_012332	ENSG00000123130	ACOT9	ACATE2|CGI-16|MT-ACT48|MTACT48	acyl-CoA thioesterase 9	protein-coding
114349	chr19	12278751	12279050	+	0	NA	intron (NM_016264, intron 1 of 3)	L1MB4|LINE|L1	15712	NM_001353551	51710		NM_016264	ENSG00000197857	ZNF44	GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58	zinc finger protein 44	protein-coding
185123	chr5	119288701	119288900	+	0	NA	intron (NM_001077654, intron 1 of 1)	intron (NM_001077654, intron 1 of 1)	20041	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
204271	chr7	2641101	2641300	+	0	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	9214	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
138770	chr2	216004801	216005500	+	0	NA	intron (NM_001372189, intron 1 of 4)	L1ME3B|LINE|L1	8401	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
190973	chr6	2969001	2969930	+	0	NA	intron (NM_001195291, intron 1 of 7)	intron (NM_001195291, intron 1 of 7)	1258	NM_001374516	5269		NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding
122894	chr19	50550301	50550500	+	0	NA	intron (NM_001080457, intron 1 of 2)	(CACA)n|Simple_repeat|Simple_repeat	642	NM_001348568	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
186874	chr5	139513321	139514530	+	0	NA	Intergenic	Intergenic	-31167	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
29785	chr10	72277471	72278130	+	0	NA	Intergenic	Intergenic	3876	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
233238	chr9	137252751	137253450	+	0	NA	exon (NM_001256700, exon 6 of 6)	exon (NM_001256700, exon 6 of 6)	397	NR_038389	100129722		NR_038389	ENSG00000275549	STPG3-AS1	C9orf173-AS1	STPG3 antisense RNA 1	ncRNA
78767	chr15	99239771	99240030	+	0	NA	intron (NM_001288615, intron 3 of 13)	MIRc|SINE|MIR	9681	NR_109947	64927		NM_022905	ENSG00000103852	TTC23	HCC-8	tetratricopeptide repeat domain 23	protein-coding
129384	chr2	68807801	68808780	+	0	NA	intron (NM_001364820, intron 4 of 9)	intron (NM_001364820, intron 4 of 9)	33380	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
42125	chr11	67619171	67619950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-3896	NR_033791	390213		NR_033791		DOC2GP	-	double C2 domain gamma, pseudogene	pseudo
183883	chr5	87287151	87288480	+	0	NA	intron (NM_022650, intron 1 of 24)	intron (NM_022650, intron 1 of 24)	18878	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
140362	chr2	232757521	232758230	+	0	NA	intron (NM_001103146, intron 6 of 28)	intron (NM_001103146, intron 6 of 28)	18690	NM_001172417	3769		NM_002242	ENSG00000115474	KCNJ13	KIR1.4|KIR7.1|LCA16|SVD	potassium inwardly rectifying channel subfamily J member 13	protein-coding
110847	chr19	2561571	2562630	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-68615	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
18069	chr1	160644351	160644950	+	0	NA	intron (NR_104400, intron 1 of 4)	intron (NR_104400, intron 1 of 4)	2394	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
58474	chr12	132143471	132145500	+	0	NA	promoter-TSS (NM_024078)	promoter-TSS (NM_024078)	28	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
112529	chr19	6516701	6517480	+	0	NA	Intergenic	Intergenic	-13936	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
153181	chr22	23838451	23839830	+	0	NA	promoter-TSS (NM_001135751)	promoter-TSS (NM_001135751)	-134	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
73331	chr15	41965801	41966700	+	0	NA	intron (NM_139265, intron 1 of 5)	L2b|LINE|L2	6307	NM_139265	30844		NM_139265	ENSG00000103966	EHD4	PAST4	EH domain containing 4	protein-coding
72851	chr15	40240001	40240330	+	0	NA	intron (NM_020168, intron 1 of 10)	intron (NM_020168, intron 1 of 10)	368	NM_020168	56924		NM_020168	ENSG00000137843	PAK6	PAK5	p21 (RAC1) activated kinase 6	protein-coding
46815	chr11	130427921	130428900	+	0	NA	5' UTR (NM_007037, exon 1 of 9)	5' UTR (NM_007037, exon 1 of 9)	199	NM_007037	11095		NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif 8	protein-coding
145820	chr20	45605051	45605150	+	0	NA	Intergenic	AluY|SINE|Alu	-24639	NM_080753	140832		NM_080753	ENSG00000180305	WFDC10A	C20orf146|WAP10|dJ688G8.3	WAP four-disulfide core domain 10A	protein-coding
70744	chr14	103388921	103390380	+	0	NA	intron (NM_002376, intron 1 of 15)	intron (NM_002376, intron 1 of 15)	4235	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
11113	chr1	86391921	86392350	+	0	NA	intron (NM_020729, intron 1 of 17)	L1PB1|LINE|L1	3926	NM_001366784	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
1868	chr1	6419221	6420750	+	0	NA	promoter-TSS (NM_019089)	promoter-TSS (NM_019089)	-66	NM_019089	54626		NM_019089	ENSG00000069812	HES2	bHLHb40	hes family bHLH transcription factor 2	protein-coding
101176	chr17	65171621	65172350	+	0	NA	intron (NM_001165933, intron 8 of 16)	intron (NM_001165933, intron 8 of 16)	34615	NM_001165933	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
104455	chr17	81100951	81101130	+	0	NA	intron (NM_001385159, intron 2 of 8)	intron (NM_001385159, intron 2 of 8)	3429	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
105053	chr17	82073171	82073930	+	0	NA	Intergenic	AluJb|SINE|Alu	-7746	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
166807	chr3	122586151	122586450	+	0	NA	intron (NM_001113523, intron 1 of 11)	AluJr4|SINE|Alu	8650	NM_001308320	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
201670	chr6	149506501	149506700	+	0	NA	intron (NM_139126, intron 12 of 12)	intron (NM_139126, intron 12 of 12)	-21586	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
130026	chr2	74330171	74330580	+	0	NA	intron (NM_133478, intron 4 of 30)	intron (NM_133478, intron 4 of 30)	13041	NM_133478	57835		NM_021196	ENSG00000188687	SLC4A5	NBC4|NBCe2	solute carrier family 4 member 5	protein-coding
126369	chr2	27444101	27444300	+	0	NA	TTS (NM_001321325)	TTS (NM_001321325)	1819	NM_001321325	200634		NM_173853	ENSG00000157992	KRTCAP3	KCP3	keratinocyte associated protein 3	protein-coding
65470	chr14	51846561	51848150	+	0	NA	Intergenic	Intergenic	-13257	NM_001243773	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
199137	chr6	111717551	111718000	+	0	NA	intron (NM_001370529, intron 2 of 11)	intron (NM_001370529, intron 2 of 11)	41356	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
2444	chr1	9625901	9626350	+	0	NA	Intergenic	L2a|LINE|L2	-25606	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
129230	chr2	68249851	68250150	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	2532	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
56853	chr12	120256971	120257130	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	-6887	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
128920	chr2	64330771	64331330	+	0	NA	Intergenic	Intergenic	-9709	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
72158	chr15	29111101	29111500	+	0	NA	intron (NM_001353793, intron 11 of 12).2	intron (NM_001353793, intron 11 of 12).2	40642	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
31055	chr10	88984121	88984380	+	0	NA	intron (NM_001320855, intron 1 of 8)	L3|LINE|CR1	-6548	NR_028035	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
89736	chr16	89433501	89434280	+	0	NA	intron (NR_110932, intron 1 of 2)	intron (NR_110932, intron 1 of 2)	2972	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
3794	chr1	16713721	16713980	+	0	NA	intron (NR_026567, intron 1 of 10)	intron (NR_026567, intron 1 of 10)	6307	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
109362	chr19	631601	631800	+	0	NA	intron (NM_005035, intron 2 of 20)	intron (NM_005035, intron 2 of 20)	1837	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
155821	chr22	39343451	39344130	+	0	NA	Intergenic	Intergenic	-6159	NM_145731	9145		NM_004711	ENSG00000100321	SYNGR1	-	synaptogyrin 1	protein-coding
196798	chr6	45830321	45831630	+	0	NA	Intergenic	Intergenic	106622	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
143180	chr20	24289871	24290230	+	0	NA	Intergenic	Intergenic	90283	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
4203	chr1	19448371	19449080	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	35570	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
112974	chr19	7864571	7864730	+	0	NA	3' UTR (NM_001159944, exon 20 of 20)	3' UTR (NM_001159944, exon 20 of 20)	9740	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
215962	chr8	8626471	8626630	+	0	NA	Intergenic	Intergenic	-75387	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
27335	chr10	30587621	30587880	+	0	NA	Intergenic	Intergenic	42003	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
71208	chr14	105085701	105085900	+	0	NA	Intergenic	Intergenic	-8347	NR_110546	102723354		NR_110546		LINC02298	-	long intergenic non-protein coding RNA 2298	ncRNA
221922	chr8	129726301	129726580	+	0	NA	Intergenic	Intergenic	-46201	NR_130917	137196		NR_130917	ENSG00000229140	CCDC26	GLM7|RAM	CCDC26 long non-coding RNA	ncRNA
135711	chr2	169026001	169026200	+	0	NA	intron (NM_003742, intron 1 of 27)	MER90a|LTR|ERV1	5224	NM_003742	8647		NM_003742	ENSG00000073734	ABCB11	ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP	ATP binding cassette subfamily B member 11	protein-coding
182216	chr5	56848321	56848580	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	32901	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
90240	chr17	750571	750730	+	0	NA	intron (NM_015721, intron 1 of 1)	intron (NM_015721, intron 1 of 1)	1614	NM_015721	50628		NM_015721	ENSG00000179409	GEMIN4	HC56|HCAP1|HHRF-1|NEDMCR|p97	gem nuclear organelle associated protein 4	protein-coding
98823	chr17	48407201	48407600	+	0	NA	intron (NM_001075099, intron 1 of 12)	intron (NM_001075099, intron 1 of 12)	22814	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
228223	chr9	97903001	97903680	+	0	NA	intron (NM_001371658, intron 4 of 4)	intron (NM_001371658, intron 4 of 4)	18841	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
95806	chr17	38733751	38734330	+	0	NA	3' UTR (NM_001369615, exon 10 of 10)	3' UTR (NM_001369615, exon 10 of 10)	3699	NM_001136498	284106		NM_001136498	ENSG00000277972	CISD3	MiNT|Miner2	CDGSH iron sulfur domain 3	protein-coding
98992	chr17	48742321	48742780	+	0	NA	Intergenic	Intergenic	-13800	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
229933	chr9	126641121	126641930	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	27597	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
108672	chr18	76858771	76858930	+	0	NA	intron (NM_001306089, intron 3 of 30)	intron (NM_001306089, intron 3 of 30)	35090	NM_007345	7776		NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
122671	chr19	49875171	49875330	+	0	NA	intron (NM_001278160, intron 1 of 4)	MIR|SINE|MIR	999	NM_001278159	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
175878	chr4	80045601	80045800	+	0	NA	intron (NM_001145794, intron 7 of 15)	intron (NM_001145794, intron 7 of 15)	27529	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
17597	chr1	156887321	156887580	+	0	NA	Intergenic	Intergenic	-6268	NM_001353682	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
186691	chr5	138665001	138665550	+	0	NA	Intergenic	Intergenic	88034	NR_134245	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
8467	chr1	40782501	40782700	+	0	NA	Intergenic	Intergenic	-1187	NM_004700	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
233547	chrX	254001	254650	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-22031	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228347	chr9	99012921	99013300	+	0	NA	intron (NM_001855, intron 9 of 41)	MER4-int|LTR|ERV1	69203	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
103549	chr17	78664071	78664230	+	0	NA	Intergenic	Intergenic	-32093	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
172775	chr4	2931661	2932600	+	0	NA	exon (NM_001120, exon 6 of 12)	exon (NM_001120, exon 6 of 12)	2107	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
115069	chr19	14199901	14200930	+	0	NA	intron (NM_001008701, intron 1 of 23)	MER58C|DNA|hAT-Charlie	5754	NM_001008701	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
220177	chr8	95160021	95160480	+	0	NA	Intergenic	Intergenic	26465	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
33609	chr10	119542201	119544280	+	0	NA	promoter-TSS (NM_001005339)	promoter-TSS (NM_001005339)	-521	NM_001005339	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
188442	chr5	154470871	154471230	+	0	NA	Intergenic	Intergenic	7177	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
121029	chr19	45804271	45804630	+	0	NA	exon (NM_030785, exon 3 of 6)	exon (NM_030785, exon 3 of 6)	10858	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
57265	chr12	121589221	121592000	+	0	NA	Intergenic	Intergenic	-5919	NR_049838	100847078		NR_049838	ENSG00000265470	MIR548AQ	-	microRNA 548aq	ncRNA
37627	chr11	20366751	20367050	+	0	NA	intron (NM_006410, intron 2 of 5)	intron (NM_006410, intron 2 of 5)	2759	NM_001098523	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
219731	chr8	81044471	81044830	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	67418	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
207391	chr7	44200471	44201750	+	0	NA	5' UTR (NM_001363678, exon 1 of 6)	5' UTR (NM_001363678, exon 1 of 6)	132	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
106033	chr18	8634401	8634680	+	0	NA	intron (NM_001025300, intron 3 of 5)	intron (NM_001025300, intron 3 of 5)	25095	NM_001025300	201475		NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding
154137	chr22	31240051	31240350	+	0	NA	intron (NM_005569, intron 2 of 15)	intron (NM_005569, intron 2 of 15)	-8184	NM_016733	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
69970	chr14	99792851	99793830	+	0	NA	promoter-TSS (NM_004434)	promoter-TSS (NM_004434)	-73	NM_001008707	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
52093	chr12	54107101	54107530	+	0	NA	intron (NR_026655, intron 1 of 1)	CpG	5106	NR_026657	100240734		NR_026657		LOC100240734	-	uncharacterized LOC100240734	ncRNA
1129	chr1	2139471	2140230	+	0	NA	intron (NR_146911, intron 2 of 15)	intron (NR_146911, intron 2 of 15)	35134	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
160520	chr3	30646401	30647080	+	0	NA	intron (NM_001024847, intron 3 of 7)	L3|LINE|CR1	40139	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
82370	chr16	16005271	16005630	+	0	NA	intron (NM_004996, intron 1 of 30)	AluSc|SINE|Alu	55834	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
98781	chr17	48138201	48138680	+	0	NA	intron (NM_001075099, intron 11 of 12)	AluSx|SINE|Alu	18071	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
25802	chr10	11186351	11186930	+	0	NA	intron (NM_001326346, intron 2 of 11)	Tigger4a|DNA|TcMar-Tigger	21610	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
205681	chr7	23181271	23182880	+	0	NA	promoter-TSS (NM_001370446)	promoter-TSS (NM_001370446)	27	NM_001370444	11097		NM_007342	ENSG00000136243	NUP42	CG1|NLP-1|NLP1|NLP_1|NUPL2|UIP1|hCG1	nucleoporin 42	protein-coding
28996	chr10	63354971	63355280	+	0	NA	intron (NM_001322258, intron 2 of 24)	intron (NM_001322258, intron 2 of 24)	17923	NR_031566	100302150		NR_031566	ENSG00000221063	MIR1296	MIRN1296|hsa-mir-1296|mir-1296	microRNA 1296	ncRNA
70393	chr14	101961051	101961580	+	0	NA	Intergenic	Intergenic	-3258	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
57290	chr12	121643971	121644330	+	0	NA	Intergenic	AluJr4|SINE|Alu	17600	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
76091	chr15	72489621	72489880	+	0	NA	intron (NM_005744, intron 1 of 13)	intron (NM_005744, intron 1 of 13)	15420	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
151306	chr21	45544071	45544230	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	-1710	NM_001205206	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
165440	chr3	98540101	98540700	+	0	NA	Intergenic	Intergenic	8422	NM_005290	2838		NM_005290	ENSG00000154165	GPR15	BOB	G protein-coupled receptor 15	protein-coding
34357	chr10	132209321	132209980	+	0	NA	intron (NR_134911, intron 10 of 12)	intron (NR_134911, intron 10 of 12)	22702	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
101568	chr17	68044401	68045080	+	0	NA	intron (NM_002266, intron 9 of 10)	intron (NM_002266, intron 9 of 10)	8780	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
87386	chr16	70456021	70456280	+	0	NA	intron (NM_145059, intron 1 of 23)	AluJr|SINE|Alu	1555	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
68351	chr14	77706151	77706450	+	0	NA	intron (NM_006020, intron 1 of 5)	intron (NM_006020, intron 1 of 5)	1723	NM_006020	8846		NM_006020	ENSG00000100601	ALKBH1	ABH|ABH1|ALKBH|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding
231772	chr9	132245851	132246300	+	0	NA	Intergenic	Intergenic	84017	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
65902	chr14	55274971	55275130	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	2896	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
19251	chr1	172673701	172673900	+	0	NA	Intergenic	MIRc|SINE|MIR	14697	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
68896	chr14	91340951	91341250	+	0	NA	intron (NM_001080414, intron 6 of 29)	intron (NM_001080414, intron 6 of 29)	76720	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
170779	chr3	188834321	188834650	+	0	NA	intron (NR_164692, intron 7 of 9)	intron (NR_164692, intron 7 of 9)	113154	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
106339	chr18	13032121	13032580	+	0	NA	intron (NM_032142, intron 11 of 44)	intron (NM_032142, intron 11 of 44)	40988	NM_032142	55125		NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
236337	chrX	69615851	69616900	+	0	NA	exon (NM_001005612, exon 1 of 8)	exon (NM_001005612, exon 1 of 8)	262	NM_001005613	1896		NM_001399	ENSG00000158813	EDA	ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED	ectodysplasin A	protein-coding
37974	chr11	34915501	34917230	+	0	NA	promoter-TSS (NM_003477)	promoter-TSS (NM_003477)	14	NM_015957	51074		NM_015957	ENSG00000149089	APIP	APIP2|CGI-29|CGI29|MMRP19|hAPIP	APAF1 interacting protein	protein-coding
191140	chr6	4137301	4137630	+	0	NA	intron (NR_103764, intron 2 of 3)	intron (NR_103764, intron 2 of 3)	1393	NR_103764	100507506		NR_103764	ENSG00000234817	ECI2-DT	-	ECI2 divergent transcript	ncRNA
121247	chr19	46668951	46669250	+	0	NA	intron (NR_040041, intron 1 of 2)	AluJb|SINE|Alu	7622	NR_040041	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
61379	chr13	51446401	51447050	+	0	NA	3' UTR (NM_001039938, exon 3 of 3)	3' UTR (NM_001039938, exon 3 of 3)	6311	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
10512	chr1	66840771	66841180	+	0	NA	intron (NM_207014, intron 8 of 9)	ERVL-B4-int|LTR|ERVL	-39699	NM_005478	10022		NM_005478	ENSG00000172410	INSL5	PRO182|UNQ156	insulin like 5	protein-coding
65371	chr14	50552721	50552980	+	0	NA	intron (NM_001127713, intron 1 of 13)	L1PB2|LINE|L1	-7175	NM_181598	51062		NM_015915	ENSG00000198513	ATL1	AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1	atlastin GTPase 1	protein-coding
41085	chr11	65518921	65519980	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-5633	NM_001048218	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
121323	chr19	46772771	46773130	+	0	NA	Intergenic	AluY|SINE|Alu	11864	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
97204	chr17	42708671	42709430	+	0	NA	promoter-TSS (NR_106838)	promoter-TSS (NR_106838)	-899	NR_106838	102466195		NR_106838	ENSG00000275273	MIR6780A	hsa-mir-6780a	microRNA 6780a	ncRNA
160377	chr3	27914221	27914680	+	0	NA	Intergenic	Intergenic	-80314	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
24474	chr1	244056651	244056950	+	0	NA	3' UTR (NM_006352, exon 1 of 1)	3' UTR (NM_006352, exon 1 of 1)	3595	NM_006352	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
203524	chr7	774221	774830	+	0	NA	intron (NR_075098, intron 10 of 12)	CpG-25260	-41032	NM_001171946	23353		NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
115363	chr19	15229101	15229300	+	0	NA	intron (NM_024794, intron 4 of 6)	AluSz|SINE|Alu	3248	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
129332	chr2	68742901	68743100	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	7623	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
164879	chr3	71082851	71083300	+	0	NA	intron (NM_001244810, intron 7 of 20)	MSTA|LTR|ERVL-MaLR	-18151	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
136080	chr2	173151571	173151930	+	0	NA	intron (NM_133646, intron 2 of 11)	MIR|SINE|MIR	75904	NM_016653	51776		NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
45112	chr11	117133801	117134000	+	0	NA	Intergenic	MIRc|SINE|MIR	-10384	NM_001184748	5049		NM_002572	ENSG00000168092	PAFAH1B2	HEL-S-303	platelet activating factor acetylhydrolase 1b catalytic subunit 2	protein-coding
100693	chr17	63829321	63829930	+	0	NA	intron (NM_001199163, intron 3 of 11)	intron (NM_001199163, intron 3 of 11)	1941	NM_001199163	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
103988	chr17	80032551	80033480	+	0	NA	intron (NM_019020, intron 1 of 11)	intron (NM_019020, intron 1 of 11)	2857	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
10388	chr1	65009951	65010280	+	0	NA	intron (NM_001321853, intron 2 of 26)	MLT1F1|LTR|ERVL-MaLR	-7639	NR_119383	101927084		NR_119383	ENSG00000226891	LINC01359	-	long intergenic non-protein coding RNA 1359	ncRNA
109260	chr19	529801	530300	+	0	NA	Intergenic	AluY|SINE|Alu	-1710	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
149794	chr21	34944171	34944630	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-55701	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
101596	chr17	68100501	68100700	+	0	NA	promoter-TSS (NR_027418)	promoter-TSS (NR_027418)	-955	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
29870	chr10	72624071	72624500	+	0	NA	intron (NM_006077, intron 1 of 11)	AluJb|SINE|Alu	1794	NM_001195518	10367		NM_006077	ENSG00000107745	MICU1	CALC|CBARA1|EFHA3|MPXPS|ara CALC	mitochondrial calcium uptake 1	protein-coding
73430	chr15	43122501	43123650	+	0	NA	Intergenic	Intergenic	-10040	NM_001347009	80021		NM_024956	ENSG00000137842	TMEM62	-	transmembrane protein 62	protein-coding
159464	chr3	14133271	14133930	+	0	NA	intron (NM_024334, intron 6 of 11)	intron (NM_024334, intron 6 of 11)	8548	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
7077	chr1	32022451	32022750	+	0	NA	intron (NR_073498, intron 1 of 8)	intron (NR_073498, intron 1 of 8)	8732	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
119052	chr19	39083151	39083450	+	0	NA	Intergenic	Intergenic	-1068	NM_001363687	390928		NM_001004318	ENSG00000183760	ACP7	PAPL|PAPL1	acid phosphatase 7, tartrate resistant (putative)	protein-coding
33063	chr10	110877921	110878230	+	0	NA	intron (NM_145341, intron 3 of 12)	intron (NM_145341, intron 3 of 12)	6147	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
122358	chr19	49339401	49339600	+	0	NA	intron (NM_001774, intron 7 of 7)	CpG	4094	NM_001040031	951		NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
180031	chr5	1051971	1052130	+	0	NA	3' UTR (NM_006598, exon 24 of 24).2	3' UTR (NM_006598, exon 24 of 24).2	10924	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
235185	chrX	41332621	41333600	+	0	NA	promoter-TSS (NR_126093)	promoter-TSS (NR_126093)	-198	NR_126093	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
18505	chr1	161749271	161750680	+	0	NA	exon (NM_007240, exon 1 of 6)	exon (NM_007240, exon 1 of 6)	189	NM_007240	11266		NM_007240	ENSG00000081721	DUSP12	DUSP1|YVH1	dual specificity phosphatase 12	protein-coding
22641	chr1	223720501	223720700	+	0	NA	intron (NM_001748, intron 2 of 20)	AluJb|SINE|Alu	8061	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
150261	chr21	41763701	41764100	+	0	NA	intron (NM_020639, intron 1 of 7)	intron (NM_020639, intron 1 of 7)	3152	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
5844	chr1	26716451	26717180	+	0	NA	intron (NM_139135, intron 1 of 19)	AluSx|SINE|Alu	20800	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
83228	chr16	23839501	23839830	+	0	NA	intron (NM_212535, intron 2 of 16)	MIR|SINE|MIR	3682	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
156489	chr22	41279471	41280450	+	0	NA	intron (NM_001278651, intron 3 of 16)	AluSx1|SINE|Alu	6227	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
219609	chr8	80066851	80067450	+	0	NA	intron (NM_001287144, intron 1 of 5)	intron (NM_001287144, intron 1 of 5)	13680	NM_001025252	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
227075	chr9	84709651	84709950	+	0	NA	intron (NM_006180, intron 5 of 18)	intron (NM_006180, intron 5 of 18)	3899	NM_001369552	4915		NM_006180	ENSG00000148053	NTRK2	DEE58|EIEE58|GP145-TrkB|OBHD|TRKB|trk-B	neurotrophic receptor tyrosine kinase 2	protein-coding
96635	chr17	40598221	40599930	+	0	NA	Intergenic	Intergenic	-33603	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
180304	chr5	5421571	5423630	+	0	NA	promoter-TSS (NM_015325)	promoter-TSS (NM_015325)	-77	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
112038	chr19	5127621	5128300	+	0	NA	intron (NM_015015, intron 11 of 22)	intron (NM_015015, intron 11 of 22)	158847	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
168147	chr3	138960521	138960950	+	0	NA	Intergenic	CpG	13518	NM_001040061	401089		NM_001040061	ENSG00000206262	FOXL2NB	C3orf72	FOXL2 neighbor	protein-coding
53749	chr12	68649371	68649930	+	0	NA	intron (NM_001251917, intron 2 of 5)	intron (NM_001251917, intron 2 of 5)	-22275	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
219959	chr8	89729971	89730130	+	0	NA	intron (NR_125822, intron 1 of 4)	intron (NR_125822, intron 1 of 4)	27661	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
149693	chr21	33948401	33949240	+	0	NA	intron (NR_038883, intron 2 of 2)	intron (NR_038883, intron 2 of 2)	17606	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
221044	chr8	116753121	116753380	+	0	NA	intron (NM_003756, intron 1 of 7)	intron (NM_003756, intron 1 of 7)	2573	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
59954	chr13	31801171	31801330	+	0	NA	intron (NM_001166058, intron 16 of 16)	intron (NM_001166058, intron 16 of 16)	-45533	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
233825	chrX	1483871	1485230	+	0	NA	intron (NM_178129, intron 1 of 1)	AluSx1|SINE|Alu	-30788	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
217407	chr8	28364921	28365180	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	21410	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
136201	chr2	174568501	174568700	+	0	NA	intron (NM_001375839, intron 4 of 6)	intron (NM_001375839, intron 4 of 6)	-10528	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
86682	chr16	67517301	67517500	+	0	NA	TTS (NR_104656)	TTS (NR_104656)	11345	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
140260	chr2	232298901	232299450	+	0	NA	intron (NR_046477, intron 12 of 18)	L2a|LINE|L2	-79576	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
100794	chr17	64024471	64026580	+	0	NA	Intergenic	MIRb|SINE|MIR	-4891	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
193018	chr6	28345951	28346450	+	0	NA	intron (NM_001135215, intron 3 of 7)	ERV3-16A3_I-int|LTR|ERVL	-3747	NM_001242894	80317		NM_024493	ENSG00000189298	ZKSCAN3	ZF47|ZFP306|ZNF306|ZNF309|ZSCAN13|ZSCAN35|Zfp47|dJ874C20.1|dJ874C20.1.|zfp-47	zinc finger with KRAB and SCAN domains 3	protein-coding
124675	chr2	3377021	3378380	+	0	NA	5' UTR (NM_001330530, exon 1 of 10)	5' UTR (NM_001330530, exon 1 of 10)	118	NM_003310	7260		NM_003310	ENSG00000032389	EIPR1	EIPR-1|TSSC1	EARP complex and GARP complex interacting protein 1	protein-coding
85530	chr16	53054371	53055830	+	0	NA	intron (NM_001308319, intron 1 of 38)	CpG	109	NR_168120	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
175657	chr4	76896921	76897600	+	0	NA	exon (NM_001029870, exon 1 of 1)	exon (NM_001029870, exon 1 of 1)	884	NM_001029870	345079		NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
52475	chr12	55969151	55969450	+	0	NA	intron (NM_052827, intron 4 of 5)	intron (NM_052827, intron 4 of 5)	2470	NM_001290230	1017		NM_001798	ENSG00000123374	CDK2	CDKN2|p33(CDK2)	cyclin dependent kinase 2	protein-coding
63596	chr14	20484971	20485430	+	0	NA	Intergenic	AluSp|SINE|Alu	15794	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
221450	chr8	124363901	124364400	+	0	NA	intron (NM_194291, intron 1 of 6)	intron (NM_194291, intron 1 of 6)	8549	NM_194291	157378		NM_194291	ENSG00000164983	TMEM65	-	transmembrane protein 65	protein-coding
143648	chr20	31863551	31864050	+	0	NA	intron (NM_001012644, intron 5 of 6)	MamTip2|DNA|hAT-Tip100	6431	NM_177991	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
67794	chr14	73763871	73764030	+	0	NA	intron (NM_001043318, intron 1 of 11)	MIRc|SINE|MIR	-3647	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
54918	chr12	96177001	96177450	+	0	NA	Intergenic	Intergenic	-17150	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
166082	chr3	108914851	108915400	+	0	NA	intron (NM_005459, intron 3 of 3)	intron (NM_005459, intron 3 of 3)	38721	NM_001363884	9626		NM_005459	ENSG00000138472	GUCA1C	GCAP3	guanylate cyclase activator 1C	protein-coding
48124	chr12	7893101	7893500	+	0	NA	Intergenic	AluY|SINE|Alu	-2104	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
199728	chr6	125753371	125753980	+	0	NA	intron (NM_012259, intron 3 of 4)	intron (NM_012259, intron 3 of 4)	4043	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
52323	chr12	54966051	54966550	+	0	NA	intron (NM_014796, intron 4 of 8)	intron (NM_014796, intron 4 of 8)	7432	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
148767	chr21	8197151	8198280	+	0	NA	promoter-TSS (NR_038958)	promoter-TSS (NR_038958)	95	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
19948	chr1	184839471	184839630	+	0	NA	intron (NM_052966, intron 5 of 13)	L1MD2|LINE|L1	-84692	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
158497	chr3	2765021	2765280	+	0	NA	intron (NM_175607, intron 6 of 24)	intron (NM_175607, intron 6 of 24)	-127065	NM_175613	152330		NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
118417	chr19	35774921	35776380	+	0	NA	promoter-TSS (NM_001366178)	promoter-TSS (NM_001366178)	86	NM_001366178	115703		NM_052948	ENSG00000004777	ARHGAP33	NOMA-GAP|SNX26|TCGAP	Rho GTPase activating protein 33	protein-coding
139114	chr2	218961651	218962200	+	0	NA	3' UTR (NM_003936, exon 1 of 1)	3' UTR (NM_003936, exon 1 of 1)	2259	NM_003936	8941		NM_003936	ENSG00000171450	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin dependent kinase 5 regulatory subunit 2	protein-coding
60227	chr13	40531821	40532230	+	0	NA	Intergenic	AluSg4|SINE|Alu	-51019	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
154269	chr22	31628671	31628830	+	0	NA	intron (NM_014338, intron 1 of 8)	intron (NM_014338, intron 1 of 8)	2074	NM_014338	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
70023	chr14	100092451	100092750	+	0	NA	intron (NM_016337, intron 2 of 13)	AluSq2|SINE|Alu	16914	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
157216	chr22	43186371	43187930	+	0	NA	promoter-TSS (NM_015140)	promoter-TSS (NM_015140)	-16	NM_015140	23170		NM_015140	ENSG00000100304	TTLL12	dJ526I14.2	tubulin tyrosine ligase like 12	protein-coding
117296	chr19	19488921	19489900	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	26138	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
195350	chr6	36632201	36632880	+	0	NA	Intergenic	Intergenic	-10028	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
175907	chr4	80180301	80180900	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	-4670	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
184039	chr5	91373651	91374050	+	0	NA	non-coding (NR_138072, exon 7 of 8)	non-coding (NR_138072, exon 7 of 8)	6247	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
96412	chr17	40163871	40164030	+	0	NA	exon (NM_007359, exon 7 of 14)	exon (NM_007359, exon 7 of 14)	2017	NR_106926	102466986		NR_106926	ENSG00000284144	MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
111487	chr19	3962071	3962850	+	0	NA	promoter-TSS (NR_030367)	promoter-TSS (NR_030367)	-948	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
94736	chr17	30787971	30788780	+	0	NA	intron (NR_144394, intron 8 of 8)	intron (NR_144394, intron 8 of 8)	36317	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
209183	chr7	75397901	75398200	+	0	NA	promoter-TSS (NM_001317815).2	promoter-TSS (NM_001317815).2	-92	NM_001317815	378108		NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
76321	chr15	74395621	74395880	+	0	NA	TTS (NR_146881)	TTS (NR_146881)	15682	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
72582	chr15	34950001	34950200	+	0	NA	intron (NM_014691, intron 4 of 34)	AluSc|SINE|Alu	19642	NM_014691	9716		NM_014691	ENSG00000021776	AQR	IBP160|fSAP164	aquarius intron-binding spliceosomal factor	protein-coding
13805	chr1	117573971	117574130	+	0	NA	Intergenic	Intergenic	31720	NR_121626	100996263		NR_121626	ENSG00000236866	TENT5C-DT	-	TENT5C divergent transcript	ncRNA
13491	chr1	114721401	114722030	+	0	NA	intron (NM_001242891, intron 17 of 20)	AluJb|SINE|Alu	-4944	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
134818	chr2	148533421	148534080	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-111001	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
148510	chr20	64085921	64086380	+	0	NA	intron (NM_001200019, intron 1 of 5)	intron (NM_001200019, intron 1 of 5)	1151	NM_001200019	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
103576	chr17	78692951	78693050	+	0	NA	intron (NM_001292019, intron 9 of 12)	intron (NM_001292019, intron 9 of 12)	24032	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
160871	chr3	33437101	33437580	+	0	NA	intron (NM_014517, intron 1 of 15)	AluJr|SINE|Alu	3038	NM_001128160	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
141669	chr2	241788171	241788850	+	0	NA	intron (NM_022134, intron 1 of 3)	MER4-int|LTR|ERV1	11688	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
50018	chr12	42469001	42469400	+	0	NA	intron (NM_153026, intron 4 of 7)	intron (NM_153026, intron 4 of 7)	14415	NM_001144881	144165		NM_153026	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle planar cell polarity protein 1	protein-coding
71186	chr14	105053971	105054400	+	0	NA	intron (NM_001278696, intron 1 of 1)	intron (NM_001278696, intron 1 of 1)	11245	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
51716	chr12	53206951	53207650	+	0	NA	promoter-TSS (NM_000889)	promoter-TSS (NM_000889)	-49	NM_000889	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
236516	chrX	72047771	72047930	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	3441	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
215134	chr7	155405671	155406250	+	0	NA	Intergenic	Intergenic	23884	NR_147174	100286906		NR_147174		LINC03010	-	long intergenic non-protein coding RNA 3010	ncRNA
151581	chr21	46633021	46634080	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-2045	NM_001286677	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
95281	chr17	35517071	35517230	+	0	NA	intron (NM_001363830, intron 2 of 4)	L1MC3|LINE|L1	20711	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
91289	chr17	4146171	4146530	+	0	NA	intron (NM_144611, intron 1 of 3)	AluSz6|SINE|Alu	2653	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
236831	chrX	79195071	79195330	+	0	NA	Intergenic	L1MA2|LINE|L1	50512	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
22010	chr1	209822851	209823850	+	0	NA	Intergenic	Intergenic	-4622	NM_014388	27042		NM_014388	ENSG00000117597	UTP25	C1orf107|DEF|DIEXF|DJ434O14.5	UTP25 small subunit processome component	protein-coding
19771	chr1	182120721	182121030	+	0	NA	Intergenic	Intergenic	-59163	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
11353	chr1	89614601	89615000	+	0	NA	Intergenic	L2a|LINE|L2	18094	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
35382	chr11	1307201	1307700	+	0	NA	intron (NM_001318516, intron 1 of 4)	intron (NM_001318516, intron 1 of 4)	2182	NM_001318515	54472		NM_019009	ENSG00000078902	TOLLIP	IL-1RAcPIP	toll interacting protein	protein-coding
61177	chr13	49128221	49128480	+	0	NA	intron (NM_001079673, intron 4 of 25)	L2a|LINE|L2	18033	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
74923	chr15	63710871	63711430	+	0	NA	intron (NM_003922, intron 24 of 77)	AluJr|SINE|Alu	-110323	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
35518	chr11	1555201	1556050	+	0	NA	3' UTR (NM_004420, exon 7 of 7)	3' UTR (NM_004420, exon 7 of 7)	16646	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
26416	chr10	17200621	17201840	+	0	NA	intron (NM_001351223, intron 1 of 11)	intron (NM_001351223, intron 1 of 11)	442	NM_001321006	1787		NM_004412	ENSG00000107614	TRDMT1	DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1	tRNA aspartic acid methyltransferase 1	protein-coding
74892	chr15	63596371	63596530	+	0	NA	promoter-TSS (NM_001367808)	promoter-TSS (NM_001367808)	-937	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
38146	chr11	35418401	35418600	+	0	NA	intron (NM_001252652, intron 1 of 11)	intron (NM_001252652, intron 1 of 11)	1058	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
27213	chr10	28624251	28624550	+	0	NA	Intergenic	Intergenic	-53121	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
174771	chr4	47704851	47705500	+	0	NA	intron (NM_006587, intron 5 of 21)	intron (NM_006587, intron 5 of 21)	52506	NR_107020	102467004		NR_107020	ENSG00000277388	MIR8053	hsa-mir-8053	microRNA 8053	ncRNA
141580	chr2	241603121	241603380	+	0	NA	intron (NM_001164356, intron 2 of 4)	intron (NM_001164356, intron 2 of 4)	14251	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
158836	chr3	9794421	9794750	+	0	NA	intron (NM_001198780, intron 1 of 5)	AluJo|SINE|Alu	1503	NM_001198780	10093		NM_005718	ENSG00000241553	ARPC4	ARC20|DEVLO|P20-ARC	actin related protein 2/3 complex subunit 4	protein-coding
7025	chr1	31920021	31920280	+	0	NA	intron (NM_080391, intron 1 of 5)	AluSp|SINE|Alu	17668	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
24732	chr1	248172051	248172150	+	0	NA	Intergenic	L1PA2|LINE|L1	-7886	NM_001004688	391194		NM_001004688	ENSG00000198601	OR2M2	OR2M2Q|OST423	olfactory receptor family 2 subfamily M member 2	protein-coding
637	chr1	1340671	1341250	+	0	NA	intron (NM_004421, intron 5 of 14)	intron (NM_004421, intron 5 of 14)	-1252	NR_106866	102466740		NR_106866	ENSG00000284372	MIR6808	hsa-mir-6808	microRNA 6808	ncRNA
200318	chr6	133817521	133817780	+	0	NA	intron (NR_109982, intron 2 of 8)	intron (NR_109982, intron 2 of 8)	-3497	NR_027030	154089		NM_153224		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
118591	chr19	36493071	36493400	+	0	NA	Intergenic	LTR13|LTR|ERVK	3608	NR_036504	728752		NR_036504	ENSG00000267309	ZNF566-AS1	-	ZNF566 antisense RNA 1	ncRNA
158511	chr3	3129571	3130130	+	0	NA	intron (NM_182916, intron 2 of 7)	MIR|SINE|MIR	2910	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
72318	chr15	31258251	31258780	+	0	NA	Intergenic	L1MB8|LINE|L1	-27653	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
208090	chr7	56100351	56100680	+	0	NA	Intergenic	AluSq10|SINE|Alu	5961	NM_016139	51142		NM_016139	ENSG00000106153	CHCHD2	C7orf17|MIX17B|MNRR1|NS2TP|PARK22	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding
197625	chr6	83192421	83194430	+	0	NA	promoter-TSS (NM_001322336)	promoter-TSS (NM_001322336)	68	NM_001322339	112611		NM_033411	ENSG00000013392	RWDD2A	RWDD2|dJ747H23.2	RWD domain containing 2A	protein-coding
91938	chr17	7337851	7338030	+	0	NA	intron (NM_014716, intron 2 of 21)	L2c|LINE|L2	1411	NM_014716	9744		NM_014716	ENSG00000072818	ACAP1	CENTB1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding
137899	chr2	200858921	200859480	+	0	NA	intron (NR_027856, intron 3 of 10)	intron (NR_027856, intron 3 of 10)	5361	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
207897	chr7	50416421	50416880	+	0	NA	Intergenic	Intergenic	33700	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
34159	chr10	128070371	128070530	+	0	NA	exon (NM_006504, exon 14 of 21)	exon (NM_006504, exon 14 of 21)	-8025	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
16030	chr1	152216971	152217500	+	0	NA	exon (NM_001009931, exon 3 of 3)	exon (NM_001009931, exon 3 of 3)	6958	NM_001009931	388697		NM_001009931	ENSG00000197915	HRNR	FLG3|S100A16|S100a18	hornerin	protein-coding
215616	chr7	159198211	159198900	+	0	NA	Intergenic	Intergenic	-53598	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
153961	chr22	30358251	30358350	+	0	NA	intron (NM_001017437, intron 1 of 11)	MIR|SINE|MIR	-1406	NM_005877	10291		NM_005877	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	splicing factor 3a subunit 1	protein-coding
233792	chrX	1444001	1444750	+	0	NA	intron (NM_001173473, intron 1 of 12).2	AluSx|SINE|Alu	8534	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
115110	chr19	14350471	14350630	+	0	NA	intron (NR_134908, intron 1 of 3)	intron (NR_134908, intron 1 of 3)	13440	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
155190	chr22	37806421	37806830	+	0	NA	3' UTR (NM_005318, exon 1 of 1)	3' UTR (NM_005318, exon 1 of 1)	-1280	NM_001171690	23464		NM_014291	ENSG00000100116	GCAT	KBL	glycine C-acetyltransferase	protein-coding
99644	chr17	50630471	50631230	+	0	NA	Intergenic	Intergenic	-4031	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
165054	chr3	71447001	71447380	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	94899	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
188711	chr5	157311401	157311600	+	0	NA	intron (NM_014376, intron 10 of 30)	intron (NM_014376, intron 10 of 30)	34177	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
177575	chr4	119451221	119451750	+	0	NA	intron (NR_135112, intron 1 of 1)	intron (NR_135112, intron 1 of 1)	3143	NR_135112	101926918		NR_135112	ENSG00000291202	GTF2IP12	-	general transcription factor IIi pseudogene 12	pseudo
149288	chr21	28627751	28628080	+	0	NA	Intergenic	MER51A|LTR|ERV1	88597	NR_026552	118421		NR_026552	ENSG00000226935	LINC00161	C21orf100|Linc-USP16|NCRNA00161	long intergenic non-protein coding RNA 161	ncRNA
55688	chr12	107565071	107565230	+	0	NA	intron (NM_001347944, intron 3 of 14)	intron (NM_001347944, intron 3 of 14)	-15724	NM_001017523	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
93523	chr17	19024001	19024480	+	0	NA	exon (NM_006613, exon 4 of 5)	exon (NM_006613, exon 4 of 5)	-19476	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
145191	chr20	38883001	38883930	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-42952	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
143960	chr20	32828421	32828830	+	0	NA	intron (NM_012325, intron 2 of 6)	MIRc|SINE|MIR	8671	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
123138	chr19	52050151	52050330	+	0	NA	Intergenic	Intergenic	-1402	NM_014650	9668		NM_014650	ENSG00000256087	ZNF432	-	zinc finger protein 432	protein-coding
181781	chr5	50749901	50750400	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	82736	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
210508	chr7	100192001	100192200	+	0	NA	intron (NM_012447, intron 8 of 33)	Tigger1|DNA|TcMar-Tigger	14182	NM_001282718	10734		NM_012447	ENSG00000066923	STAG3	SA3|SPGF61	STAG3 cohesin complex component	protein-coding
171544	chr3	196774201	196774800	+	0	NA	intron (NM_002577, intron 1 of 14)	intron (NM_002577, intron 1 of 14)	34643	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
12436	chr1	104057321	104057580	+	0	NA	Intergenic	L1P3|LINE|L1	-15573	NR_033990	100129138		NR_033990	ENSG00000293061	THAP3P1	-	THAP3 pseudogene 1	pseudo
56447	chr12	113912701	113913000	+	0	NA	intron (NM_016196, intron 21 of 23)	intron (NM_016196, intron 21 of 23)	53475	NM_001146698	9904		NM_016196	ENSG00000122965	RBM19	Mrd1	RNA binding motif protein 19	protein-coding
159008	chr3	10419921	10420200	+	0	NA	intron (NM_001353564, intron 3 of 20)	intron (NM_001353564, intron 3 of 20)	-25498	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
239130	chrY	11310151	11310900	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1111065	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
80559	chr16	2840121	2840380	+	0	NA	non-coding (NR_026864, exon 1 of 2)	non-coding (NR_026864, exon 1 of 2)	2501	NR_026864	124221		NM_178453	ENSG00000291300	PRSS30P	Disp|TMPRSS8|TMPRSS8P	serine protease 30, pseudogene	pseudo
139636	chr2	225990051	225990350	+	0	NA	Intergenic	Intergenic	-152594	NR_046102	646736		NR_046102		LOC646736	-	uncharacterized LOC646736	ncRNA
177462	chr4	113683021	113683830	+	0	NA	intron (NM_001321585, intron 2 of 19)	intron (NM_001321585, intron 2 of 19)	78313	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
135442	chr2	161191421	161191880	+	0	NA	intron (NM_133484, intron 2 of 3)	MIR|SINE|MIR	31222	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
33470	chr10	119067201	119067400	+	0	NA	intron (NM_003750, intron 6 of 21)	intron (NM_003750, intron 6 of 21)	-7162	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
3073	chr1	12182021	12182430	+	0	NA	intron (NM_001066, intron 1 of 9)	MIRb|SINE|MIR	-9488	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
39790	chr11	61954171	61954550	+	0	NA	promoter-TSS (NM_001363593)	promoter-TSS (NM_001363593)	-875	NM_001363593	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
153855	chr22	30220751	30221850	+	0	NA	Intergenic	Intergenic	-17894	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
212926	chr7	130921051	130921150	+	0	NA	intron (NR_109780, intron 3 of 3)	intron (NR_109780, intron 3 of 3)	7636	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
223409	chr8	143930721	143931430	+	0	NA	intron (NM_201383, intron 19 of 31)	intron (NM_201383, intron 19 of 31)	8522	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
164846	chr3	71040601	71040800	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	24224	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
117268	chr19	19459701	19460300	+	0	NA	intron (NM_001384522, intron 3 of 13)	intron (NM_001384522, intron 3 of 13)	24937	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
100288	chr17	59709371	59709650	+	0	NA	intron (NM_001329394, intron 1 of 11)	MIRc|SINE|MIR	1856	NM_001329401	81671		NM_030938	ENSG00000062716	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding
130522	chr2	85610271	85610430	+	0	NA	intron (NM_001013649, intron 2 of 3)	L2b|LINE|L2	1716	NM_001013649	388969		NM_001013649	ENSG00000168887	C2orf68	HCRCN81	chromosome 2 open reading frame 68	protein-coding
11634	chr1	91752021	91752480	+	0	NA	intron (NR_036634, intron 5 of 17)	MER53|DNA|hAT	133901	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
21747	chr1	206864921	206865550	+	0	NA	promoter-TSS (NM_001385165)	promoter-TSS (NM_001385165)	-388	NM_018724	50604		NM_018724	ENSG00000162891	IL20	IL-20|IL10D|ZCYTO10	interleukin 20	protein-coding
228841	chr9	112179321	112179580	+	0	NA	Intergenic	AluY|SINE|Alu	-4153	NM_001282643	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
196232	chr6	42844101	42844300	+	0	NA	intron (NM_015349, intron 5 of 11)	L2c|LINE|L2	23144	NM_015349	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
216015	chr8	9029671	9030150	+	0	NA	exon (NM_001354636, exon 8 of 8)	exon (NM_001354636, exon 8 of 8)	-18535	NR_039804	100616350		NR_039804	ENSG00000263407	MIR4660	-	microRNA 4660	ncRNA
202842	chr6	159756001	159756280	+	0	NA	3' UTR (NM_004906, exon 8 of 8)	3' UTR (NM_004906, exon 8 of 8)	-5905	NM_005891	39		NM_005891	ENSG00000120437	ACAT2	-	acetyl-CoA acetyltransferase 2	protein-coding
207436	chr7	44561701	44562100	+	0	NA	Intergenic	Intergenic	12638	NM_001257189	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
62531	chr13	99548151	99548730	+	0	NA	intron (NM_004800, intron 11 of 16)	intron (NM_004800, intron 11 of 16)	-28672	NR_126390	104355149		NR_126390		LINC01039	-	long intergenic non-protein coding RNA 1039	ncRNA
77934	chr15	89324971	89325650	+	0	NA	intron (NM_002693, intron 10 of 22)	intron (NM_002693, intron 10 of 22)	1500	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
39765	chr11	61900571	61901030	+	0	NA	intron (NM_001271686, intron 7 of 8)	intron (NM_001271686, intron 7 of 8)	-9255	NM_021727	3995		NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
184333	chr5	96945151	96945450	+	0	NA	intron (NM_005575, intron 1 of 17)	AluJr|SINE|Alu	9220	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
170746	chr3	188339421	188340300	+	0	NA	intron (NR_164692, intron 2 of 9)	intron (NR_164692, intron 2 of 9)	126964	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
188832	chr5	159102521	159102850	+	0	NA	intron (NR_109890, intron 1 of 2)	intron (NR_109890, intron 1 of 2)	2202	NR_109890	101927740		NR_109890	ENSG00000245812	LINC02202	-	long intergenic non-protein coding RNA 2202	ncRNA
120976	chr19	45716751	45718880	+	0	NA	intron (NM_001329633, intron 1 of 1)	intron (NM_001329633, intron 1 of 1)	-2537	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
59230	chr13	23651921	23652330	+	0	NA	intron (NM_148957, intron 5 of 9)	intron (NM_148957, intron 5 of 9)	72765	NM_001204458	55504		NM_018647	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	TNF receptor superfamily member 19	protein-coding
233596	chrX	324821	325480	+	0	NA	Intergenic	AluSx1|SINE|Alu	6005	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
228396	chr9	99135561	99136180	+	0	NA	intron (NM_004612, intron 3 of 8)	AluSz|SINE|Alu	30757	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
58404	chr12	131907371	131907530	+	0	NA	intron (NM_003565, intron 4 of 27)	intron (NM_003565, intron 4 of 27)	12828	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
45248	chr11	117988321	117988900	+	0	NA	intron (NM_001558, intron 2 of 6)	intron (NM_001558, intron 2 of 6)	2216	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
231988	chr9	133337671	133337830	+	0	NA	TTS (NM_133640).2	TTS (NM_133640).2	-1562	NM_006753	6838		NM_006753	ENSG00000148296	SURF6	RRP14	surfeit 6	protein-coding
214629	chr7	150736051	150736400	+	0	NA	intron (NM_001199577, intron 3 of 5)	MER67C|LTR|ERV1	-1123	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
89413	chr16	88857701	88858700	+	0	NA	intron (NM_001318530, intron 1 of 4)	intron (NM_001318530, intron 1 of 4)	1073	NM_001318524	51693		NM_016209	ENSG00000167515	TRAPPC2L	HSPC176|PERRB	trafficking protein particle complex subunit 2L	protein-coding
23188	chr1	226944651	226944950	+	0	NA	intron (NM_020247, intron 1 of 14)	intron (NM_020247, intron 1 of 14)	4506	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
105904	chr18	3384751	3384950	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-27159	NM_174886	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
31682	chr10	97454151	97454450	+	0	NA	intron (NM_198044, intron 6 of 9)	intron (NM_198044, intron 6 of 9)	8125	NM_198046	84287		NM_032327	ENSG00000171307	ZDHHC16	APH2|DHHC-16	zinc finger DHHC-type palmitoyltransferase 16	protein-coding
15653	chr1	150842751	150842850	+	0	NA	intron (NM_001286035, intron 5 of 22)	intron (NM_001286035, intron 5 of 22)	33799	NM_001197325	405		NM_001668	ENSG00000143437	ARNT	ARNT1|HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2	aryl hydrocarbon receptor nuclear translocator	protein-coding
5029	chr1	24506321	24508430	+	0	NA	promoter-TSS (NM_001251978)	promoter-TSS (NM_001251978)	-219	NM_001251978	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
168168	chr3	139764001	139764330	+	0	NA	Intergenic	MIRc|SINE|MIR	-86115	NM_178177	349565		NM_178177	ENSG00000163864	NMNAT3	FKSG76|PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
54852	chr12	95475601	95475800	+	0	NA	intron (NM_001330246, intron 1 of 10)	intron (NM_001330246, intron 1 of 10)	1548	NM_001317183	10988		NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
131524	chr2	96560551	96560850	+	0	NA	Intergenic	AluSx|SINE|Alu	22821	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
235202	chrX	41348621	41349200	+	0	NA	3' UTR (NM_001363819, exon 17 of 17)	3' UTR (NM_001363819, exon 17 of 17)	14744	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
178290	chr4	145101121	145101630	+	0	NA	intron (NM_001040876, intron 1 of 17)	L2a|LINE|L2	-2834	NM_001256708	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
208523	chr7	70334721	70335200	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	736485	NM_001127232	26053		NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	activator of transcription and developmental regulator AUTS2	protein-coding
165830	chr3	105836571	105837330	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	30641	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
123249	chr19	53196671	53197780	+	0	NA	Intergenic	Intergenic	-3867	NM_001353459	79788		NM_024733	ENSG00000197497	ZNF665	ZFP160L	zinc finger protein 665	protein-coding
105654	chr18	2570701	2573250	+	0	NA	promoter-TSS (NM_001308401)	promoter-TSS (NM_001308401)	418	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
138070	chr2	201785021	201785380	+	0	NA	Intergenic	AluJo|SINE|Alu	-4267	NM_020919	57679		NM_020919	ENSG00000003393	ALS2	ALS2CR6|ALSJ|IAHSP|PLSJ	alsin Rho guanine nucleotide exchange factor ALS2	protein-coding
23881	chr1	234867221	234867480	+	0	NA	Intergenic	Intergenic	96649	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
164391	chr3	58332671	58333980	+	0	NA	promoter-TSS (NM_001349498)	promoter-TSS (NM_001349498)	19	NM_001349498	54899		NM_017771	ENSG00000168297	PXK	MONAKA|SLOB	PX domain containing serine/threonine kinase like	protein-coding
91547	chr17	5033551	5033650	+	0	NA	exon (NM_017986, exon 3 of 5)	exon (NM_017986, exon 3 of 5)	1826	NM_017986	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
78642	chr15	94266871	94267230	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	35489	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
66745	chr14	64510641	64512030	+	0	NA	intron (NM_001123329, intron 1 of 1)	intron (NM_001123329, intron 1 of 1)	-6122	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
64428	chr14	24191671	24192030	+	0	NA	intron (NM_001289006, intron 4 of 5).2	AluJb|SINE|Alu	-2932	NR_051979	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
238918	chrX	154731001	154731600	+	0	NA	intron (NR_104114, intron 1 of 8)	intron (NR_104114, intron 1 of 8)	19777	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
234058	chrX	7089071	7089500	+	0	NA	intron (NM_001178136, intron 2 of 3)	intron (NM_001178136, intron 2 of 3)	-58005	NM_001320750	412		NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase	protein-coding
187212	chr5	140698551	140698650	+	0	NA	3' UTR (NM_001278732, exon 11 of 11)	3' UTR (NM_001278732, exon 11 of 11)	-1847	NM_144723	153527		NM_144723	ENSG00000146007	ZMAT2	Ptg-12|Snu23	zinc finger matrin-type 2	protein-coding
196098	chr6	42345751	42346550	+	0	NA	intron (NM_033502, intron 3 of 17)	intron (NM_033502, intron 3 of 17)	105901	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
101825	chr17	73594351	73594650	+	0	NA	intron (NM_001144952, intron 1 of 44)	GA-rich|Low_complexity|Low_complexity	49945	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
40233	chr11	63568371	63568530	+	0	NA	Intergenic	AluSc|SINE|Alu	-5071	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
158479	chr22	50780251	50780750	+	0	NA	intron (NM_001003789, intron 2 of 8)	intron (NM_001003789, intron 2 of 8)	3136	NM_001350008	11158		NM_007081	ENSG00000079974	RABL2B	-	RAB, member of RAS oncogene family like 2B	protein-coding
65168	chr14	49587921	49588630	+	0	NA	intron (NM_001351375, intron 1 of 2)	L3|LINE|CR1	1695	NR_002715	6029		NR_002715	ENSG00000276168	RN7SL1	7L1a|7SL|RN7SL|RNSRP1	RNA component of signal recognition particle 7SL1	scRNA
175422	chr4	70996951	70997050	+	0	NA	intron (NM_000788, intron 1 of 6)	intron (NM_000788, intron 1 of 6)	3351	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
9724	chr1	53170571	53170930	+	0	NA	Intergenic	AluJb|SINE|Alu	-26074	NM_001330589	1376		NM_000098	ENSG00000157184	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
187983	chr5	149507421	149507680	+	0	NA	intron (NM_001892, intron 7 of 9)	AluJb|SINE|Alu	42815	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
143305	chr20	25313471	25313850	+	0	NA	intron (NM_001042472, intron 6 of 12)	AluSx3|SINE|Alu	65575	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
65400	chr14	50793371	50793830	+	0	NA	intron (NM_020921, intron 4 of 30)	intron (NM_020921, intron 4 of 30)	-28197	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
19537	chr1	178541971	178543300	+	0	NA	promoter-TSS (NR_033186)	promoter-TSS (NR_033186)	-161	NR_033186	400798		NM_207467	ENSG00000213057	C1orf220	-	chromosome 1 putative open reading frame 220	ncRNA
29360	chr10	69620651	69621030	+	0	NA	Intergenic	Intergenic	-9407	NM_145306	219738		NM_145306	ENSG00000171224	FAM241B	C10orf35	family with sequence similarity 241 member B	protein-coding
130726	chr2	86763571	86763930	+	0	NA	intron (NM_022780, intron 4 of 8)	AluJb|SINE|Alu	27163	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
105753	chr18	2757371	2757930	+	0	NA	intron (NM_015295, intron 34 of 47)	L1ME3B|LINE|L1	-89356	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
73932	chr15	51077221	51077760	+	0	NA	intron (NM_207381, intron 2 of 2)	intron (NM_207381, intron 2 of 2)	17416	NM_001311175	388121		NM_207381	ENSG00000183578	TNFAIP8L3	TIPE3	TNF alpha induced protein 8 like 3	protein-coding
121268	chr19	46701601	46702000	+	0	NA	intron (NM_001079881, intron 6 of 18)	MER20|DNA|hAT-Charlie	7554	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
115228	chr19	14502551	14503680	+	0	NA	Intergenic	Intergenic	-6966	NM_202494	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
22147	chr1	212041551	212041650	+	0	NA	intron (NM_001286229, intron 1 of 12)	AluY|SINE|Alu	5852	NM_016448	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
79068	chr16	159771	160930	+	0	NA	Intergenic	Intergenic	-5628	NM_001003938	3042		NM_001003938	ENSG00000206177	HBM	HBAP2|HBK	hemoglobin subunit mu	protein-coding
76629	chr15	75575871	75576330	+	0	NA	intron (NM_002833, intron 1 of 12)	AluSc|SINE|Alu	3215	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
29395	chr10	70142501	70142700	+	0	NA	intron (NR_073580, intron 1 of 1)	intron (NR_073580, intron 1 of 1)	2128	NR_073595	219743		NM_173555	ENSG00000156521	TYSND1	NET41	trypsin like peroxisomal matrix peptidase 1	protein-coding
170542	chr3	186775051	186775350	+	0	NA	Intergenic	L1MB3|LINE|L1	-8377	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
61869	chr13	77026301	77026700	+	0	NA	intron (NM_012158, intron 1 of 4)	CpG	659	NM_012158	26224		NM_012158	ENSG00000005812	FBXL3	FBL3|FBL3A|FBXL3A|IDDSFAS	F-box and leucine rich repeat protein 3	protein-coding
65861	chr14	55057551	55058150	+	0	NA	intron (NM_144578, intron 1 of 3)	AluJb|SINE|Alu	6203	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
23723	chr1	231973851	231974150	+	0	NA	intron (NM_001164538, intron 10 of 10)	intron (NM_001164538, intron 10 of 10)	48166	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
84585	chr16	30648851	30649150	+	0	NA	Intergenic	Intergenic	-1778	NM_001320464	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
231549	chr9	131478001	131478900	+	0	NA	intron (NM_013318, intron 17 of 31)	intron (NM_013318, intron 17 of 31)	-7215	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
101547	chr17	67998471	67999150	+	0	NA	Intergenic	Intergenic	-2341	NM_001382359	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
69472	chr14	95265501	95265700	+	0	NA	intron (NM_024734, intron 1 of 12)	intron (NM_024734, intron 1 of 12)	54308	NM_024734	79789		NM_024734	ENSG00000165959	CLMN	-	calmin	protein-coding
748	chr1	1494101	1494500	+	0	NA	intron (NM_031921, intron 15 of 15)	intron (NM_031921, intron 15 of 15)	16451	NM_001317238	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
82860	chr16	21524171	21525000	+	0	NA	Intergenic	Intergenic	-4141	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
196066	chr6	42216171	42216700	+	0	NA	intron (NM_018141, intron 1 of 6)	intron (NM_018141, intron 1 of 6)	1426	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
223224	chr8	143603471	143604000	+	0	NA	TTS (NM_032862)	TTS (NM_032862)	5840	NM_001329866	65263		NM_023078	ENSG00000104524	PYCR3	PYCRL	pyrroline-5-carboxylate reductase 3	protein-coding
195801	chr6	41071701	41074830	+	0	NA	promoter-TSS (NR_138080)	promoter-TSS (NR_138080)	291	NM_021705	4800		NM_002505	ENSG00000001167	NFYA	CBF-A|CBF-B|HAP2|NF-YA	nuclear transcription factor Y subunit alpha	protein-coding
116855	chr19	18608321	18608700	+	0	NA	Intergenic	Intergenic	-1711	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
63792	chr14	21304621	21305080	+	0	NA	intron (NM_020366, intron 6 of 24)	AluY|SINE|Alu	-12703	NM_001377950	57096		NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	RPGR interacting protein 1	protein-coding
124941	chr2	8586021	8586830	+	0	NA	Intergenic	Intergenic	-2633	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
129689	chr2	70523851	70524580	+	0	NA	intron (NM_001099691, intron 1 of 5)	intron (NM_001099691, intron 1 of 5)	29231	NM_001308159	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
25961	chr10	11614671	11615100	+	0	NA	Intergenic	Intergenic	-3096	NR_125732	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
21969	chr1	208694251	208694460	+	0	NA	Intergenic	AluYj4|SINE|Alu	-34333	NR_146914	105372893		NR_146914	ENSG00000232812	LINC01717	-	long intergenic non-protein coding RNA 1717	ncRNA
217450	chr8	28624951	28625530	+	0	NA	Intergenic	Intergenic	76224	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
127487	chr2	42249901	42250300	+	0	NA	intron (NM_019063, intron 2 of 22)	MER130|DNA|DNA	-79869	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
94532	chr17	29574171	29574930	+	0	NA	3' UTR (NM_014030, exon 20 of 20)	3' UTR (NM_014030, exon 20 of 20)	5849	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
176803	chr4	102527021	102527380	+	0	NA	intron (NM_001382625, intron 3 of 24)	L2c|LINE|L2	-24714	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
82895	chr16	21616171	21616330	+	0	NA	intron (NM_016025, intron 2 of 4).2	Charlie15a|DNA|hAT-Charlie	16673	NM_016025	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
213095	chr7	131113101	131114080	+	0	NA	intron (NM_001145354, intron 1 of 18)	AluSz|SINE|Alu	3496	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
82401	chr16	16187421	16187680	+	0	NA	intron (NR_147784, intron 13 of 28)	intron (NR_147784, intron 13 of 28)	35921	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
15334	chr1	149915651	149916580	+	0	NA	intron (NM_014849, intron 1 of 12)	intron (NM_014849, intron 1 of 12)	1729	NM_001328674	9900		NM_014849	ENSG00000159164	SV2A	DEE113|SLC22B1|SV2	synaptic vesicle glycoprotein 2A	protein-coding
26175	chr10	14526921	14527380	+	0	NA	intron (NM_001282695, intron 4 of 5)	intron (NM_001282695, intron 4 of 5)	5564	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
106682	chr18	23234471	23235080	+	0	NA	intron (NM_138375, intron 5 of 9)	intron (NM_138375, intron 5 of 9)	78950	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
56826	chr12	120225721	120226430	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	24088	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
114644	chr19	13012651	13013600	+	0	NA	intron (NM_001365902, intron 1 of 10)	CpG	-10847	NM_001271044	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
121296	chr19	46727751	46728130	+	0	NA	exon (NM_013403, exon 8 of 18)	exon (NM_013403, exon 8 of 18)	-10813	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
129560	chr2	69901671	69901830	+	0	NA	intron (NM_006857, intron 4 of 5)	AluJr|SINE|Alu	7794	NM_006857	11017		NM_006857	ENSG00000124380	SNRNP27	27K|RY1	small nuclear ribonucleoprotein U4/U6.U5 subunit 27	protein-coding
190638	chr5	181217901	181218830	+	0	NA	Intergenic	Intergenic	4268	NR_039781	100616342		NR_039781	ENSG00000264732	MIR4638	mir-4638	microRNA 4638	ncRNA
126763	chr2	30245351	30245450	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	13866	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
77770	chr15	85812351	85812650	+	0	NA	Intergenic	Intergenic	-13135	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA
233568	chrX	288801	289000	+	0	NA	intron (NR_163416, intron 3 of 7)	intron (NR_163416, intron 3 of 7)	5422	NM_001370373	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
116961	chr19	18861051	18862350	+	0	NA	intron (NM_001297549, intron 17 of 23)	AluJr|SINE|Alu	29741	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
228368	chr9	99100871	99101430	+	0	NA	Intergenic	AluJb|SINE|Alu	-3963	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
103772	chr17	78992301	78992500	+	0	NA	3' UTR (NM_138793, exon 4 of 4)	3' UTR (NM_138793, exon 4 of 4)	-12477	NM_005567	3959		NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding
30185	chr10	74381621	74381880	+	0	NA	intron (NM_001369123, intron 4 of 9)	intron (NM_001369123, intron 4 of 9)	147574	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
137877	chr2	200838921	200839650	+	0	NA	Intergenic	L1M1|LINE|L1	25276	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
37828	chr11	33163221	33164030	+	0	NA	intron (NR_034027, intron 1 of 3)	AluSx1|SINE|Alu	1968	NR_034027	338739		NR_034027	ENSG00000247151	CSTF3-DT	CSTF3-AS1	CSTF3 divergent transcript	ncRNA
207879	chr7	50389051	50389350	+	0	NA	intron (NM_006060, intron 6 of 7)	intron (NM_006060, intron 6 of 7)	61150	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
236712	chrX	77911621	77911950	+	0	NA	intron (NR_104109, intron 1 of 9)	AluSq|SINE|Alu	1092	NR_104109	538		NM_000052	ENSG00000165240	ATP7A	DSMAX|HMNX|MK|MNK|SMAX3	ATPase copper transporting alpha	protein-coding
98465	chr17	47102301	47102500	+	0	NA	Intergenic	AluSg4|SINE|Alu	86895	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
168196	chr3	141105801	141106080	+	0	NA	intron (NM_080862, intron 2 of 2)	intron (NM_080862, intron 2 of 2)	54593	NM_080862	92369		NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
8331	chr1	40170071	40170430	+	0	NA	intron (NM_012421, intron 1 of 7)	AluJb|SINE|Alu	8863	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
51512	chr12	52161721	52162180	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	30064	NM_001081492	144501		NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
72786	chr15	39976501	39976800	+	0	NA	exon (NM_001013703, exon 12 of 39)	exon (NM_001013703, exon 12 of 39)	42535	NM_001013703	440275		NM_001013703	ENSG00000128829	EIF2AK4	GCN2|PVOD2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding
63981	chr14	22252951	22253050	+	0	NA	Intergenic	Intergenic	179753	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
52116	chr12	54195651	54196580	+	0	NA	Intergenic	Intergenic	-7121	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
37121	chr11	13317801	13318280	+	0	NA	intron (NM_001351815, intron 2 of 17)	MER102b|DNA|hAT-Charlie	40250	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
224191	chr9	5435421	5435680	+	0	NA	intron (NM_018465, intron 2 of 5)	intron (NM_018465, intron 2 of 5)	2375	NM_018465	55848		NM_018465	ENSG00000107020	PLGRKT	AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT)	plasminogen receptor with a C-terminal lysine	protein-coding
126664	chr2	29016321	29017380	+	0	NA	intron (NM_001321539, intron 8 of 15)	L2a|LINE|L2	35552	NM_001321538	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
195665	chr6	38057901	38058160	+	0	NA	intron (NM_021943, intron 2 of 5)	intron (NM_021943, intron 2 of 5)	238303	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
129717	chr2	70890601	70890800	+	0	NA	TTS (NR_126384)	TTS (NR_126384)	2829	NR_126384	104355141		NR_126384	ENSG00000237751	LINC01143	-	long intergenic non-protein coding RNA 1143	ncRNA
114743	chr19	13234321	13235150	+	0	NA	intron (NM_023035, intron 34 of 46)	intron (NM_023035, intron 34 of 46)	84324	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
51388	chr12	51923351	51923850	+	0	NA	TTS (NM_001077401)	TTS (NM_001077401)	11217	NM_001077401	94		NM_000020	ENSG00000139567	ACVRL1	ACVRLK1|ALK-1|ALK1|HHT|HHT2|ORW2|SKR3|TSR-I	activin A receptor like type 1	protein-coding
24536	chr1	244847271	244847850	+	0	NA	Intergenic	Intergenic	6657	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
62777	chr13	108408751	108409080	+	0	NA	Intergenic	Intergenic	139197	NM_006573	10673		NM_006573	ENSG00000102524	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4	TNF superfamily member 13b	protein-coding
44797	chr11	113475171	113475350	+	0	NA	promoter-TSS (NM_016574)	promoter-TSS (NM_016574)	19	NM_016574	1813		NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
98490	chr17	47229451	47230250	+	0	NA	Intergenic	Intergenic	20502	NM_002476	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
123027	chr19	51127901	51128330	+	0	NA	intron (NM_014441, intron 5 of 6)	intron (NM_014441, intron 5 of 6)	3209	NM_014441	27180		NM_014441	ENSG00000129450	SIGLEC9	CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9	sialic acid binding Ig like lectin 9	protein-coding
18673	chr1	167217751	167218730	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-2645	NM_001365849	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
33301	chr10	114810651	114811250	+	0	NA	Intergenic	Intergenic	-10830	NM_020940	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
56051	chr12	110521171	110521800	+	0	NA	intron (NM_001286532, intron 9 of 10)	L1ME4a|LINE|L1	19154	NM_001368054	144715		NM_152442	ENSG00000151164	RAD9B	-	RAD9 checkpoint clamp component B	protein-coding
117323	chr19	19513921	19514180	+	0	NA	TTS (NM_032037)	TTS (NM_032037)	1498	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
160093	chr3	18829871	18830280	+	0	NA	Intergenic	Intergenic	-318435	NM_144633	131096		NM_144633	ENSG00000183960	KCNH8	ELK|ELK1|Kv12.1|elk3	potassium voltage-gated channel subfamily H member 8	protein-coding
11018	chr1	84782201	84783200	+	0	NA	Intergenic	Intergenic	-92232	NM_001166295	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
220199	chr8	96143721	96144130	+	0	NA	3' UTR (NM_001001557, exon 2 of 2)	3' UTR (NM_001001557, exon 2 of 2)	16881	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
93202	chr17	17817921	17818850	+	0	NA	intron (NM_001321096, intron 5 of 18)	intron (NM_001321096, intron 5 of 18)	-4454	NR_030361	693120		NR_030361	ENSG00000207839	MIR33B	MIRN33B|hsa-mir-33b|mir-33b	microRNA 33b	ncRNA
10716	chr1	75785881	75786740	+	0	NA	promoter-TSS (NR_003042)	promoter-TSS (NR_003042)	54	NM_004582	5876		NM_004582	ENSG00000137955	RABGGTB	GGTB	Rab geranylgeranyltransferase subunit beta	protein-coding
33972	chr10	124654571	124655350	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-49068	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
162395	chr3	48186301	48186500	+	0	NA	intron (NM_001789, intron 2 of 14)	AluSp|SINE|Alu	2017	NM_001789	993		NM_001789	ENSG00000164045	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
146942	chr20	52082771	52083130	+	0	NA	Intergenic	Intergenic	22534	NM_001319146	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
77250	chr15	81307321	81307580	+	0	NA	intron (NM_172217, intron 18 of 18)	intron (NM_172217, intron 18 of 18)	10480	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
236441	chrX	71539071	71539930	+	0	NA	intron (NM_181672, intron 3 of 21)	intron (NM_181672, intron 3 of 21)	6396	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
154028	chr22	30451651	30452050	+	0	NA	intron (NM_001376914, intron 12 of 12)	AluSz6|SINE|Alu	19164	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
137371	chr2	196175701	196177350	+	0	NA	Intergenic	MIR|SINE|MIR	-4947	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
50353	chr12	47191851	47192580	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	4403	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
181302	chr5	40217651	40217950	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	165509	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
117247	chr19	19438101	19438630	+	0	NA	intron (NM_001384516, intron 2 of 12)	AluJb|SINE|Alu	3302	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
220042	chr8	92103171	92103330	+	0	NA	promoter-TSS (NM_001198633)	promoter-TSS (NM_001198633)	-24	NM_001198633	862		NM_004349	ENSG00000079102	RUNX1T1	AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	RUNX1 partner transcriptional co-repressor 1	protein-coding
158446	chr22	50612001	50613430	+	0	NA	3' UTR (NM_012324, exon 12 of 12)	3' UTR (NM_012324, exon 12 of 12)	11922	NM_012324	23542		NM_012324	ENSG00000008735	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
62257	chr13	98561371	98561930	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	15457	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
72053	chr15	28831921	28833250	+	0	NA	intron (NR_037599, intron 10 of 13)	intron (NR_037599, intron 10 of 13)	16100	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
101792	chr17	73215371	73215680	+	0	NA	intron (NM_001098832, intron 2 of 3)	AluJb|SINE|Alu	12192	NM_001289412	84923		NM_032837	ENSG00000133193	VCF1	FAM104A	VCP nuclear cofactor family member 1	protein-coding
40315	chr11	63892271	63892700	+	0	NA	intron (NM_017490, intron 1 of 17)	intron (NM_017490, intron 1 of 17)	3948	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
29025	chr10	63720121	63721200	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-198770	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
55887	chr12	109717201	109717600	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	3575	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
169885	chr3	177489151	177489250	+	0	NA	intron (NR_047568, intron 1 of 3)	intron (NR_047568, intron 1 of 3)	47279	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
61520	chr13	59391651	59392250	+	0	NA	Intergenic	LTR50|LTR|ERVL	-620768	NR_109838	100874195		NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
48748	chr12	10724271	10724430	+	0	NA	Intergenic	MIRb|SINE|MIR	-1027	NM_003651	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
68659	chr14	90061551	90061930	+	0	NA	promoter-TSS (NM_022054)	promoter-TSS (NM_022054)	-254	NM_022054	56659		NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	potassium two pore domain channel subfamily K member 13	protein-coding
39481	chr11	61006271	61006630	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	34770	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
195307	chr6	36579371	36580230	+	0	NA	Intergenic	Intergenic	-14513	NR_036610	6428		NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding
175950	chr4	80800851	80801330	+	0	NA	intron (NM_001206997, intron 4 of 6)	MLT2A1|LTR|ERVL	-229618	NM_001201	651		NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
23206	chr1	227544621	227544900	+	0	NA	Intergenic	Intergenic	-18796	NM_001367909	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
123276	chr19	53536051	53536550	+	0	NA	intron (NM_018555, intron 2 of 6)	intron (NM_018555, intron 2 of 6)	-1007	NM_001317114	55422		NM_018555	ENSG00000130844	ZNF331	RITA|ZNF361|ZNF463	zinc finger protein 331	protein-coding
9960	chr1	54795551	54795850	+	0	NA	intron (NM_017904, intron 1 of 5)	MIR3|SINE|MIR	5623	NM_017904	55001		NM_017904	ENSG00000006555	TTC22	-	tetratricopeptide repeat domain 22	protein-coding
49350	chr12	22179601	22179830	+	0	NA	Intergenic	L1ME1|LINE|L1	133497	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
89849	chr16	89596671	89597630	+	0	NA	TTS (NM_014427)	TTS (NM_014427)	-16158	NM_001128141	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
211075	chr7	102476251	102476950	+	0	NA	intron (NM_006234, intron 1 of 3)	AluSx|SINE|Alu	2322	NM_001371100	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
172498	chr4	2250971	2251880	+	0	NA	intron (NM_006454, intron 4 of 5)	intron (NM_006454, intron 4 of 5)	-1269	NR_039964	100616358		NR_039964	ENSG00000284276	MIR4800	mir-4800	microRNA 4800	ncRNA
152983	chr22	23141551	23143000	+	0	NA	promoter-TSS (NM_014433)	promoter-TSS (NM_014433)	-285	NM_014433	27156		NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding
238692	chrX	154065571	154065930	+	0	NA	intron (NM_001316337, intron 2 of 4)	AluJo|SINE|Alu	31219	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
175600	chr4	75708171	75708780	+	0	NA	Intergenic	Intergenic	-16047	NM_001290049	8615		NM_003715	ENSG00000138768	USO1	P115|TAP|VDP	USO1 vesicle transport factor	protein-coding
69734	chr14	98608771	98608930	+	0	NA	Intergenic	Intergenic	-102763	NR_161367	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
7222	chr1	32318971	32319130	+	0	NA	intron (NM_004964, intron 3 of 13)	AluSx|SINE|Alu	17183	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
221407	chr8	123520231	123521900	+	0	NA	intron (NM_148177, intron 1 of 5)	L2a|LINE|L2	11078	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
48302	chr12	8989451	8990550	+	0	NA	intron (NM_005810, intron 1 of 4)	intron (NM_005810, intron 1 of 4)	375	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
112292	chr19	5838501	5838900	+	0	NA	promoter-TSS (NM_001381959)	promoter-TSS (NM_001381959)	92	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
152212	chr22	20130271	20131400	+	0	NA	promoter-TSS (NM_013373)	promoter-TSS (NM_013373)	-969	NM_001185024	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
32997	chr10	110556721	110557800	+	0	NA	Intergenic	Intergenic	-10435	NM_005445	9126		NM_005445	ENSG00000108055	SMC3	BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1	structural maintenance of chromosomes 3	protein-coding
48971	chr12	12992671	12993150	+	0	NA	intron (NM_015987, intron 1 of 3)	MIR3|SINE|MIR	7355	NM_015987	50865		NM_015987	ENSG00000013583	HEBP1	HBP|HEBP	heme binding protein 1	protein-coding
120949	chr19	45691621	45694480	+	0	NA	promoter-TSS (NM_004597)	promoter-TSS (NM_004597)	384	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
3241	chr1	13794251	13794950	+	0	NA	intron (NM_012231, intron 8 of 9)	MIRb|SINE|MIR	45185	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
183611	chr5	80214521	80214830	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluSq2|SINE|Alu	41373	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
217044	chr8	23268171	23268530	+	0	NA	Intergenic	MER66B|LTR|ERV1	-19742	NR_125897	203069		NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
217922	chr8	38071851	38071950	+	0	NA	Intergenic	LTR6A|LTR|ERV1	-33593	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
113489	chr19	10074121	10074480	+	0	NA	TTS (NR_027300)	TTS (NR_027300)	-12017	NM_018381	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
135832	chr2	170679721	170679980	+	0	NA	Intergenic	Intergenic	34717	NR_027433	440925		NM_001013712	ENSG00000222033	LINC01124	-	long intergenic non-protein coding RNA 1124	ncRNA
168072	chr3	138114901	138115500	+	0	NA	intron (NM_173543, intron 1 of 15)	CpG	408	NM_173543	199221		NM_173543	ENSG00000158163	DZIP1L	DZIP2|PKD5	DAZ interacting zinc finger protein 1 like	protein-coding
22349	chr1	214606701	214607650	+	0	NA	intron (NM_016343, intron 1 of 19)	intron (NM_016343, intron 1 of 19)	3980	NM_016343	1063		NM_016343	ENSG00000117724	CENPF	CENF|CILD31|PRO1779|STROMS|hcp-1	centromere protein F	protein-coding
53967	chr12	74482001	74482400	+	0	NA	Intergenic	Intergenic	-55635	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
112127	chr19	5602271	5603050	+	0	NA	intron (NM_014649, intron 11 of 20)	MIR|SINE|MIR	20116	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
45951	chr11	121379051	121379980	+	0	NA	Intergenic	L1PBa|LINE|L1	-72799	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
41959	chr11	67325421	67325680	+	0	NA	intron (NR_024469, intron 2 of 3)	AluSg|SINE|Alu	7711	NR_024469	100130987		NR_024469		LOC100130987	-	uncharacterized LOC100130987	ncRNA
172466	chr4	2043571	2044300	+	0	NA	TTS (NM_001168243)	TTS (NM_001168243)	1940	NM_001141936	401115		NM_001141936	ENSG00000243449	NICOL1	C4orf48|CHR4_55|NICOL	NELL2 interacting cell ontogeny regulator 1	protein-coding
164436	chr3	59367251	59367350	+	0	NA	Intergenic	Intergenic	291197	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
147473	chr20	59120471	59121250	+	0	NA	Intergenic	Intergenic	-2528	NM_001384354	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
79994	chr16	1825701	1827730	+	0	NA	promoter-TSS (NM_031208)	promoter-TSS (NM_031208)	110	NM_005326	3029		NM_005326	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
139755	chr2	229917151	229918500	+	0	NA	intron (NM_001348325, intron 1 of 42)	AluJr|SINE|Alu	3854	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
202432	chr6	157977571	157977930	+	0	NA	Intergenic	Intergenic	-4113	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
166734	chr3	121744321	121744680	+	0	NA	intron (NM_001366282, intron 1 of 21)	AluJo|SINE|Alu	5241	NM_001366284	2804		NM_004487	ENSG00000173230	GOLGB1	GCP|GCP372|GOLIM1	golgin B1	protein-coding
50634	chr12	48711951	48712250	+	0	NA	intron (NM_001240, intron 2 of 8)	intron (NM_001240, intron 2 of 8)	4607	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
228431	chr9	99823441	99824300	+	0	NA	intron (NM_173200, intron 1 of 8)	CpG-28596	1985	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
28581	chr10	51422451	51422850	+	0	NA	intron (NM_001098512, intron 2 of 17)	intron (NM_001098512, intron 2 of 17)	123077	NR_030336	693190		NR_030336	ENSG00000207813	MIR605	MIRN605|hsa-mir-605|mir-605	microRNA 605	ncRNA
207846	chr7	50349921	50350940	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	31382	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
230774	chr9	128913201	128913400	+	0	NA	intron (NM_019594, intron 3 of 3)	intron (NM_019594, intron 3 of 3)	-7682	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
37730	chr11	31506971	31507130	+	0	NA	intron (NM_144981, intron 1 of 6)	AluY|SINE|Alu	2572	NM_144981	196294		NM_144981	ENSG00000148950	IMMP1L	IMMP1|IMP1|IMP1-LIKE	inner mitochondrial membrane peptidase subunit 1	protein-coding
185070	chr5	116281301	116281550	+	0	NA	intron (NM_016144, intron 5 of 6)	intron (NM_016144, intron 5 of 6)	25682	NR_162144	113219464		NR_162144		MIR12130	-	microRNA 12130	ncRNA
122945	chr19	50717851	50717950	+	0	NA	intron (NM_016148, intron 1 of 23)	intron (NM_016148, intron 1 of 23)	1902	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
219812	chr8	81569151	81569850	+	0	NA	Intergenic	Intergenic	-38110	NM_001105281	646486		NM_001105281	ENSG00000197416	FABP12	-	fatty acid binding protein 12	protein-coding
99683	chr17	50758151	50758850	+	0	NA	Intergenic	AluSz6|SINE|Alu	9018	NM_001358683	55018		NM_017928	ENSG00000167117	ANKRD40CL	C17orf73|LINC00483	ANKRD40 C-terminal like	protein-coding
170797	chr3	189125171	189126250	+	0	NA	Intergenic	Intergenic	-46261	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
12574	chr1	108748471	108749230	+	0	NA	intron (NM_007269, intron 1 of 18)	intron (NM_007269, intron 1 of 18)	2176	NM_007269	6814		NM_007269	ENSG00000116266	STXBP3	MUNC18-3|MUNC18C|PSP|UNC-18C	syntaxin binding protein 3	protein-coding
194708	chr6	33715071	33715230	+	0	NA	Intergenic	AluJo|SINE|Alu	-3450	NM_032340	84300		NM_032340	ENSG00000137288	UQCC2	C6orf125|C6orf126|Cbp6|M19|MC3DN7|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding
222195	chr8	133044551	133044650	+	0	NA	intron (NM_001282964, intron 5 of 6)	intron (NM_001282964, intron 5 of 6)	1981	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
199539	chr6	118808601	118809530	+	0	NA	Intergenic	Intergenic	26357	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
989	chr1	1834351	1834850	+	0	NA	intron (NM_001282539, intron 1 of 10)	intron (NM_001282539, intron 1 of 10)	-54569	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
209458	chr7	76461171	76462900	+	0	NA	intron (NM_001102595, intron 1 of 9)	CpG	380	NM_001102594	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
82529	chr16	18343571	18343730	+	0	NA	TTS (NR_106766).4	TTS (NR_106766).4	429	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
65679	chr14	52693521	52693780	+	0	NA	intron (NM_001382467, intron 1 of 14)	AluJb|SINE|Alu	1908	NM_001382476	30001		NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
13780	chr1	117341551	117341850	+	0	NA	Intergenic	Intergenic	-25749	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
61671	chr13	73983251	73983750	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	150429	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
137908	chr2	200869921	200870330	+	0	NA	TTS (NM_130906)	TTS (NM_130906)	-5467	NR_027856	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
160399	chr3	28200121	28200980	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-41069	NM_001331186	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
64646	chr14	31371871	31372230	+	0	NA	intron (NM_015473, intron 12 of 35)	intron (NM_015473, intron 12 of 35)	48500	NM_015473	25938		NM_015473	ENSG00000129493	HEATR5A	C14orf125|p200b	HEAT repeat containing 5A	protein-coding
117029	chr19	18924221	18924580	+	0	NA	intron (NM_019070, intron 7 of 12)	intron (NM_019070, intron 7 of 12)	4685	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
87718	chr16	75064351	75064650	+	0	NA	intron (NM_032268, intron 1 of 4)	AluSx1|SINE|Alu	52272	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
220924	chr8	107908371	107908530	+	0	NA	intron (NM_178565, intron 5 of 5)	intron (NM_178565, intron 5 of 5)	173489	NM_001317942	340419		NM_178565	ENSG00000147655	RSPO2	CRISTIN2|HHRRD|TETAMS2	R-spondin 2	protein-coding
146024	chr20	47150651	47150980	+	0	NA	intron (NM_172110, intron 10 of 13)	MLT1J|LTR|ERVL-MaLR	-16152	NR_037410	100500814		NR_037410	ENSG00000264901	MIR3616	mir-3616	microRNA 3616	ncRNA
230673	chr9	128715301	128716180	+	0	NA	intron (NM_001317926, intron 15 of 21)	AluJb|SINE|Alu	8387	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
148748	chr21	7744401	7744900	+	0	NA	promoter-TSS (NM_001313692).2	promoter-TSS (NM_001313692).2	-301	NM_001313692	102723553		NM_001313692	ENSG00000273590	LOC102723553	SMIM11B	small integral membrane protein 11B	protein-coding
164897	chr3	71109151	71110150	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	20936	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
120588	chr19	45008551	45009080	+	0	NA	intron (NM_006509, intron 2 of 10)	intron (NM_006509, intron 2 of 10)	7351	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
2307	chr1	9010001	9010280	+	0	NA	intron (NM_207420, intron 9 of 11)	intron (NM_207420, intron 9 of 11)	16205	NM_207420	155184		NM_207420	ENSG00000197241	SLC2A7	GLUT-7|GLUT7|hGLUT7	solute carrier family 2 member 7	protein-coding
96910	chr17	42135601	42135800	+	0	NA	intron (NM_001252039, intron 1 of 6)	intron (NM_001252039, intron 1 of 6)	12896	NM_033194	94086		NM_033194	ENSG00000260325	HSPB9	CT51	heat shock protein family B (small) member 9	protein-coding
143667	chr20	31956401	31956600	+	0	NA	Intergenic	L2|LINE|L2	-4454	NM_030815	81572		NM_030815	ENSG00000088356	PDRG1	C20orf126|PDRG	p53 and DNA damage regulated 1	protein-coding
137658	chr2	197430071	197430880	+	0	NA	intron (NM_001005526, intron 1 of 4)	AluSx|SINE|Alu	4553	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
166633	chr3	119627471	119627950	+	0	NA	intron (NR_120610, intron 9 of 10)	intron (NR_120610, intron 9 of 10)	27439	NM_001293225	51365		NM_015900	ENSG00000144837	PLA1A	PS-PLA1|PSPLA1	phospholipase A1 member A	protein-coding
141856	chr20	610051	610380	+	0	NA	promoter-TSS (NM_004609)	promoter-TSS (NM_004609)	51	NM_004609	6939		NM_004609	ENSG00000125878	TCF15	EC2|PARAXIS|bHLHa40	transcription factor 15	protein-coding
231576	chr9	131514471	131514630	+	0	NA	intron (NR_148392, intron 12 of 20)	L2a|LINE|L2	11632	NM_001353196	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
210621	chr7	100443021	100443830	+	0	NA	Intergenic	Intergenic	-6928	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
107227	chr18	36688071	36688250	+	0	NA	intron (NM_025135, intron 13 of 24)	intron (NM_025135, intron 13 of 24)	-24742	NR_132982	105372071		NR_132982		LOC105372071	-	uncharacterized LOC105372071	ncRNA
210777	chr7	100720051	100720150	+	0	NA	promoter-TSS (NM_000799)	promoter-TSS (NM_000799)	-368	NM_000799	2056		NM_000799	ENSG00000130427	EPO	DBAL|ECYT5|EP|MVCD2	erythropoietin	protein-coding
237229	chrX	109730701	109730980	+	0	NA	intron (NM_022977, intron 1 of 16)	AluY|SINE|Alu	-1671	NR_158569	105373311		NR_158569		LOC105373311	-	uncharacterized LOC105373311	ncRNA
48556	chr12	10238051	10238400	+	0	NA	promoter-TSS (NM_001351060)	promoter-TSS (NM_001351060)	-736	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
78857	chr15	100335071	100335230	+	0	NA	intron (NM_139057, intron 2 of 21)	MER5A|DNA|hAT-Charlie	6825	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
87178	chr16	69361601	69361800	+	0	NA	intron (NM_005652, intron 7 of 9)	intron (NM_005652, intron 7 of 9)	-9914	NM_144676	146456		NM_144676	ENSG00000157315	TMED6	PRO34237|SPLL9146|p24g5	transmembrane p24 trafficking protein 6	protein-coding
182259	chr5	57191251	57191700	+	0	NA	intron (NM_001331037, intron 2 of 12)	intron (NM_001331037, intron 2 of 12)	16027	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
133413	chr2	118854771	118854930	+	0	NA	Intergenic	Intergenic	-7202	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
229131	chr9	114472071	114472430	+	0	NA	intron (NM_015404, intron 2 of 11)	L2a|LINE|L2	30965	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
36049	chr11	2935921	2936630	+	0	NA	Intergenic	AluSz|SINE|Alu	-6855	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
183367	chr5	77210271	77211500	+	0	NA	5' UTR (NM_001349751, exon 1 of 21)	5' UTR (NM_001349751, exon 1 of 21)	205	NM_003719	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
107343	chr18	45827671	45828030	+	0	NA	intron (NM_213602, intron 1 of 5)	intron (NM_213602, intron 1 of 5)	2175	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
206473	chr7	33038871	33039030	+	0	NA	intron (NM_001374336, intron 1 of 10)	intron (NM_001374336, intron 1 of 10)	1956	NM_001356996	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
87871	chr16	77724051	77724150	+	0	NA	intron (NM_001105663, intron 1 of 3)	MLT1C|LTR|ERVL-MaLR	1586	NM_001105663	283927		NM_001105663	ENSG00000140876	NUDT7	-	nudix hydrolase 7	protein-coding
192718	chr6	26339671	26339830	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-25409	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
81310	chr16	4696351	4696450	+	0	NA	TTS (NR_040252)	TTS (NR_040252)	2682	NM_001370586	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
95791	chr17	38716521	38716780	+	0	NA	exon (NM_005937, exon 10 of 20)	exon (NM_005937, exon 10 of 20)	-3041	NR_039879	100616153		NR_039879	ENSG00000273627	MIR4726	-	microRNA 4726	ncRNA
91799	chr17	7027521	7027780	+	0	NA	3' UTR (NM_181844, exon 9 of 9)	3' UTR (NM_181844, exon 9 of 9)	4600	NM_181844	255877		NM_181844	ENSG00000161940	BCL6B	BAZF|ZBTB28|ZNF62	BCL6B transcription repressor	protein-coding
25986	chr10	11874701	11875500	+	0	NA	intron (NR_038222, intron 2 of 5)	intron (NR_038222, intron 2 of 5)	19610	NR_038222	219731		NR_038222	ENSG00000225778	PROSER2-AS1	-	PROSER2 antisense RNA 1	ncRNA
54647	chr12	92941121	92941380	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-11955	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
132124	chr2	101693171	101693530	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4353	NM_145686	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
43021	chr11	73997301	73997850	+	0	NA	Intergenic	L2c|LINE|L2	11510	NM_003356	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
238375	chrX	149935121	149936130	+	0	NA	intron (NM_001013845, intron 2 of 4)	intron (NM_001013845, intron 2 of 4)	2866	NM_001013845	541578		NM_001013845	ENSG00000197021	EOLA2	CXorf40B	endothelium and lymphocyte associated ASCH domain 2	protein-coding
223575	chr8	144270471	144270830	+	0	NA	intron (NM_015201, intron 3 of 15)	CpG	4197	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
146846	chr20	51426671	51427530	+	0	NA	intron (NM_012340, intron 9 of 10)	intron (NM_012340, intron 9 of 10)	25877	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
85457	chr16	50659201	50659400	+	0	NA	Intergenic	Intergenic	-9555	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
203484	chr7	581121	581380	+	0	NA	intron (NM_001164759, intron 8 of 10)	AluY|SINE|Alu	19292	NR_132384	101927000		NR_132384	ENSG00000229380	PRKAR1B-AS2	-	PRKAR1B antisense RNA 2	ncRNA
238840	chrX	154465571	154465730	+	0	NA	intron (NM_017514, intron 12 of 32)	intron (NM_017514, intron 12 of 32)	7369	NM_017514	55558		NM_017514	ENSG00000130827	PLXNA3	6.3|HSSEXGENE|PLXN3|PLXN4|XAP-6	plexin A3	protein-coding
19617	chr1	179910971	179911530	+	0	NA	intron (NM_015602, intron 8 of 9)	intron (NM_015602, intron 8 of 9)	28965	NM_001267578	26092		NM_015602	ENSG00000143337	TOR1AIP1	LAP1|LAP1B|LAP1C|LGMD2Y	torsin 1A interacting protein 1	protein-coding
130995	chr2	87795171	87795530	+	0	NA	intron (NM_001382344, intron 11 of 22).2	intron (NM_001382344, intron 11 of 22).2	30417	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
162672	chr3	48925021	48925280	+	0	NA	intron (NM_001349209, intron 2 of 15)	AluY|SINE|Alu	-5765	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
85935	chr16	57133621	57134230	+	0	NA	intron (NM_152727, intron 12 of 15)	intron (NM_152727, intron 12 of 15)	41342	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
56763	chr12	120158951	120159280	+	0	NA	intron (NM_006836, intron 24 of 57)	intron (NM_006836, intron 24 of 57)	-3616	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
31338	chr10	93068401	93068600	+	0	NA	exon (NM_183374, exon 6 of 6)	exon (NM_183374, exon 6 of 6)	-4975	NM_057157	1592		NM_000783	ENSG00000095596	CYP26A1	CP26|CYP26|P450RAI|P450RAI1	cytochrome P450 family 26 subfamily A member 1	protein-coding
6882	chr1	31394301	31395100	+	0	NA	Intergenic	Intergenic	-15077	NM_001199038	347735		NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
230145	chr9	127742671	127743150	+	0	NA	exon (NM_001142534, exon 6 of 10)	exon (NM_001142534, exon 6 of 10)	-7616	NM_001134430	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
179607	chr4	185472801	185473000	+	0	NA	TTS (NR_133944)	TTS (NR_133944)	-1167	NM_001145411	256309		NM_152775	ENSG00000168491	CCDC110	CT52|KM-HN-1|KMHN1	coiled-coil domain containing 110	protein-coding
96840	chr17	41974921	41975600	+	0	NA	3' UTR (NM_001330216, exon 4 of 4)	3' UTR (NM_001330216, exon 4 of 4)	7463	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
5916	chr1	26838671	26839630	+	0	NA	intron (NM_032283, intron 2 of 7)	intron (NM_032283, intron 2 of 7)	12462	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
126814	chr2	30462371	30462730	+	0	NA	intron (NM_182551, intron 2 of 6)	intron (NM_182551, intron 2 of 6)	15304	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
195815	chr6	41198851	41198950	+	0	NA	intron (NM_024807, intron 1 of 4)	AluSc8|SINE|Alu	2249	NM_024807	79865		NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
38022	chr11	35131671	35132030	+	0	NA	TTS (NR_120528)	TTS (NR_120528)	6182	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
156529	chr22	41420071	41420230	+	0	NA	Intergenic	AluSq2|SINE|Alu	26651	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
223462	chr8	144007671	144007830	+	0	NA	Intergenic	Intergenic	-4530	NM_198572	375686		NM_198572	ENSG00000186583	SPATC1	SPATA15	spermatogenesis and centriole associated 1	protein-coding
207024	chr7	38425271	38426530	+	0	NA	intron (NM_139316, intron 15 of 19)	HAL1|LINE|L1	84323	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
95982	chr17	39168521	39169000	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-2599	NM_001143968	390790		NM_001143968	ENSG00000141748	ARL5C	ARL12	ADP ribosylation factor like GTPase 5C	protein-coding
63966	chr14	22148471	22148630	+	0	NA	Intergenic	Intergenic	284203	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
21463	chr1	205569871	205570030	+	0	NA	promoter-TSS (NR_027086)	promoter-TSS (NR_027086)	-645	NR_152721	284578		NR_027086		MFSD4A-AS1	-	MFSD4A antisense RNA 1	ncRNA
72761	chr15	39641351	39642250	+	0	NA	intron (NM_001324338, intron 10 of 11)	intron (NM_001324338, intron 10 of 11)	60721	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
50135	chr12	45670251	45670850	+	0	NA	Intergenic	Intergenic	57371	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
199300	chr6	112029221	112029630	+	0	NA	Intergenic	Intergenic	-24679	NM_003880	8838		NM_003880	ENSG00000112761	CCN6	LIBC|PPAC|PPD|PPRD|WISP-3|WISP3	cellular communication network factor 6	protein-coding
179957	chr5	786401	786800	+	0	NA	Intergenic	Intergenic	-1871	NM_001351303	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
208158	chr7	64611721	64611980	+	0	NA	intron (NR_077227, intron 2 of 2)	BSR/Beta|Satellite|Satellite	29240	NR_033245	641746		NR_033245		LOC641746	-	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo
67284	chr14	69343351	69343450	+	0	NA	intron (NM_020692, intron 12 of 15)	MARNA|DNA|TcMar-Mariner	54899	NM_004450	2079		NM_004450	ENSG00000100632	ERH	DROER	ERH mRNA splicing and mitosis factor	protein-coding
204676	chr7	5494521	5496150	+	0	NA	TTS (NR_030318)	TTS (NR_030318)	582	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
177409	chr4	112287271	112287930	+	0	NA	Intergenic	Intergenic	-1696	NM_052864	92610		NM_052864	ENSG00000145365	TIFA	T2BP|T6BP|TIFAA	TRAF interacting protein with forkhead associated domain	protein-coding
104170	chr17	80412921	80413550	+	0	NA	intron (NR_029376, intron 1 of 1)	LTR2|LTR|ERV1	-1932	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
131275	chr2	96091421	96091880	+	0	NA	Intergenic	Intergenic	24921	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
155058	chr22	37503371	37503530	+	0	NA	intron (NM_014550, intron 9 of 19)	L2c|LINE|L2	15965	NM_014550	29775		NM_014550	ENSG00000100065	CARD10	BIMP1|CARMA3|IMD89	caspase recruitment domain family member 10	protein-coding
127435	chr2	42167671	42167830	+	0	NA	intron (NR_110584, intron 1 of 3)	MLT1J2|LTR|ERVL-MaLR	-1603	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
68701	chr14	90411671	90412250	+	0	NA	Intergenic	AluSx|SINE|Alu	13710	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
102147	chr17	75102351	75102650	+	0	NA	intron (NM_001369668, intron 4 of 5)	intron (NM_001369668, intron 4 of 5)	-7469	NM_001304272	79637		NM_024585	ENSG00000125449	ARMC7	-	armadillo repeat containing 7	protein-coding
23866	chr1	234797351	234797450	+	0	NA	Intergenic	Intergenic	-37344	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
24616	chr1	246527351	246527850	+	0	NA	Intergenic	Intergenic	-3313	NR_040002	255654		NR_040002	ENSG00000242042	LINC01743	-	long intergenic non-protein coding RNA 1743	ncRNA
232149	chr9	134062101	134062300	+	0	NA	intron (NM_007371, intron 1 of 11)	intron (NM_007371, intron 1 of 11)	5826	NM_007371	8019		NM_007371	ENSG00000169925	BRD3	FSHRG2|ORFX|RING3L	bromodomain containing 3	protein-coding
34707	chr10	133477271	133477830	+	0	NA	Intergenic	Intergenic	23622	NR_149718	619207		NM_001033584	ENSG00000214279	SCART1	-	scavenger receptor family member expressed on T cells 1	protein-coding
186729	chr5	139277321	139277580	+	0	NA	intron (NM_001194954, intron 2 of 16)	intron (NM_001194954, intron 2 of 16)	1270	NR_145749	109616975		NR_145749	ENSG00000252213	SNORA74D	-	small nucleolar RNA, H/ACA box 74D	snoRNA
226830	chr9	77800901	77801100	+	0	NA	intron (NM_002072, intron 3 of 6)	intron (NM_002072, intron 3 of 6)	-152678	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
171095	chr3	195498071	195498230	+	0	NA	Intergenic	L1MC1|LINE|L1	45175	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
212478	chr7	128529401	128529680	+	0	NA	Intergenic	AluSx|SINE|Alu	52792	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
189077	chr5	170281071	170281430	+	0	NA	intron (NM_005565, intron 3 of 20)	intron (NM_005565, intron 3 of 20)	16527	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
207942	chr7	51161001	51161280	+	0	NA	intron (NM_001346441, intron 5 of 12)	intron (NM_001346441, intron 5 of 12)	155669	NM_001346441	23242		NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
40488	chr11	64253471	64253880	+	0	NA	intron (NM_001184883, intron 1 of 28)	intron (NM_001184883, intron 1 of 28)	2145	NM_001184883	5331		NM_000932	ENSG00000149782	PLCB3	SMDCD	phospholipase C beta 3	protein-coding
143311	chr20	25387501	25388480	+	0	NA	intron (NM_001042472, intron 1 of 12)	AluSg4|SINE|Alu	2845	NM_015600	26090		NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12	abhydrolase domain containing 12, lysophospholipase	protein-coding
159146	chr3	12662701	12665180	+	0	NA	promoter-TSS (NM_001354690)	promoter-TSS (NM_001354690)	177	NR_148941	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
11226	chr1	88880471	88881550	+	0	NA	intron (NM_001514, intron 2 of 6)	AluSz6|SINE|Alu	10557	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
154202	chr22	31450871	31451030	+	0	NA	intron (NM_001164502, intron 8 of 16)	AluJb|SINE|Alu	38606	NM_001164501	56478		NM_019843	ENSG00000184708	EIF4ENIF1	4E-T|Clast4	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding
175264	chr4	67491371	67491730	+	0	NA	intron (NR_155754, intron 16 of 18)	MamRep38|DNA|hAT	53953	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
137244	chr2	191692171	191692330	+	0	NA	intron (NR_131917, intron 1 of 2)	intron (NR_131917, intron 1 of 2)	2069	NR_131917	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
2892	chr1	11654221	11655880	+	0	NA	promoter-TSS (NM_012168)	promoter-TSS (NM_012168)	173	NM_033182	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
39280	chr11	58523121	58523380	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-14950	NM_001005218	219968		NM_001005218	ENSG00000198283	OR5B21	-	olfactory receptor family 5 subfamily B member 21	protein-coding
153310	chr22	24198121	24198380	+	0	NA	Intergenic	MLT2F|LTR|ERVL	16763	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
135936	chr2	171924771	171924930	+	0	NA	intron (NR_027862, intron 1 of 9)	intron (NR_027862, intron 1 of 9)	2389	NM_003642	8520		NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding
113390	chr19	9149501	9149700	+	0	NA	intron (NM_001190791, intron 1 of 5)	L2a|LINE|L2	9203	NR_102435	57693		NM_020933	ENSG00000130803	ZNF317	-	zinc finger protein 317	protein-coding
217826	chr8	37325451	37325950	+	0	NA	Intergenic	Intergenic	168213	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
232092	chr9	133657501	133657700	+	0	NA	promoter-TSS (NR_102735)	promoter-TSS (NR_102735)	-192	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
51632	chr12	53001571	53001830	+	0	NA	Intergenic	AluY|SINE|Alu	-4756	NM_001300821	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
190417	chr5	179825451	179825550	+	0	NA	intron (NM_003900, intron 5 of 7).2	intron (NM_003900, intron 5 of 7).2	4595	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
237047	chrX	103253471	103253630	+	0	NA	3' UTR (NM_153333, exon 3 of 3)	3' UTR (NM_153333, exon 3 of 3)	1605	NM_153333	90843		NM_153333	ENSG00000180964	TCEAL8	WEX3	transcription elongation factor A like 8	protein-coding
94612	chr17	29759751	29762230	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	442	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
107049	chr18	32138321	32138980	+	0	NA	Intergenic	MER41B|LTR|ERV1	46044	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
93862	chr17	21023851	21024600	+	0	NA	intron (NM_015276, intron 2 of 12)	intron (NM_015276, intron 2 of 12)	18786	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
169331	chr3	159988221	159989330	+	0	NA	promoter-TSS (NM_001354583)	promoter-TSS (NM_001354583)	-60	NM_001354583	3592		NM_000882	ENSG00000168811	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
65886	chr14	55131571	55132100	+	0	NA	intron (NM_002306, intron 1 of 5)	intron (NM_002306, intron 1 of 5)	2583	NM_002306	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
141952	chr20	1284071	1284630	+	0	NA	intron (NM_014723, intron 2 of 5)	L2a|LINE|L2	18056	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
52256	chr12	54421901	54422100	+	0	NA	intron (NR_120488, intron 1 of 2)	intron (NR_120488, intron 1 of 2)	2215	NR_120488	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
169004	chr3	152433571	152433730	+	0	NA	intron (NM_207296, intron 4 of 8)	AluY|SINE|Alu	-92660	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
62319	chr13	99050201	99050630	+	0	NA	intron (NM_001318849, intron 1 of 54)	AluSx3|SINE|Alu	-34630	NM_001366676	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
180255	chr5	1655101	1655300	+	0	NA	Intergenic	Intergenic	-21195	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
190591	chr5	181101271	181102150	+	0	NA	Intergenic	CpG	23594	NM_001258283	26693		NM_001258283	ENSG00000185372	OR2V1	OR2V1P|OST265	olfactory receptor family 2 subfamily V member 1	protein-coding
10176	chr1	61270701	61271350	+	0	NA	intron (NM_001145512, intron 3 of 11)	intron (NM_001145512, intron 3 of 11)	-17507	NR_104180	645030		NR_104180	ENSG00000237853	NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
174920	chr4	49112051	49112750	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	125758	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
231451	chr9	131270001	131271850	+	0	NA	intron (NM_033387, intron 1 of 1)	intron (NM_033387, intron 1 of 1)	5585	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
88477	chr16	85082551	85082850	+	0	NA	intron (NM_014732, intron 10 of 12)	intron (NM_014732, intron 10 of 12)	19488	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
219916	chr8	86315621	86315880	+	0	NA	Intergenic	L1PREC2|LINE|L1	-26797	NM_007013	11059		NM_007013	ENSG00000123124	WWP1	AIP5|Tiul1|hSDRP1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
44549	chr11	108122951	108123330	+	0	NA	intron (NM_000019, intron 1 of 11)	AluSx1|SINE|Alu	1573	NM_000019	38		NM_000019	ENSG00000075239	ACAT1	ACAT|MAT|T2|THIL	acetyl-CoA acetyltransferase 1	protein-coding
75877	chr15	69723421	69723850	+	0	NA	Intergenic	Intergenic	-111599	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
89919	chr16	89716421	89716680	+	0	NA	exon (NM_004913, exon 4 of 15)	exon (NM_004913, exon 4 of 15)	-3818	NR_110128	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
45576	chr11	118872201	118873350	+	0	NA	Intergenic	Intergenic	-11117	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
200641	chr6	136952771	136953130	+	0	NA	Intergenic	Intergenic	30649	NM_001008783	340146		NM_001008783	ENSG00000182747	SLC35D3	FRCL1	solute carrier family 35 member D3	protein-coding
107192	chr18	35949751	35950800	+	0	NA	Intergenic	CpG	-16133	NR_037497	100500864		NR_037497	ENSG00000265641	MIR3929	-	microRNA 3929	ncRNA
148253	chr20	63652401	63654430	+	0	NA	promoter-TSS (NM_015894)	promoter-TSS (NM_015894)	9	NM_015894	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
160480	chr3	30607951	30608950	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	1849	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
141602	chr2	241641451	241641550	+	0	NA	intron (NM_013325, intron 1 of 12)	AluY|SINE|Alu	3807	NM_013325	23192		NM_013325	ENSG00000168397	ATG4B	APG4B|AUTL1|HsAPG4B	autophagy related 4B cysteine peptidase	protein-coding
77451	chr15	84345971	84346130	+	0	NA	Intergenic	AluSq2|SINE|Alu	-76469	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
132999	chr2	111545601	111546150	+	0	NA	Intergenic	MIR|SINE|MIR	-50714	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
202997	chr6	162843971	162844330	+	0	NA	intron (NM_001080378, intron 3 of 5)	L1PA2|LINE|L1	116180	NM_001080379	135138		NM_152410	ENSG00000112530	PACRG	BUG21|GLUP|HAK005771|PACRG2.1|PARK2CRG|pf12	parkin coregulated	protein-coding
144082	chr20	33718321	33718650	+	0	NA	intron (NM_183397, intron 1 of 2)	AluY|SINE|Alu	1825	NM_007238	11264		NM_007238	ENSG00000101417	PXMP4	PMP24	peroxisomal membrane protein 4	protein-coding
28566	chr10	50659751	50660600	+	0	NA	Intergenic	Intergenic	35224	NR_126411	104355295		NR_126411		SGMS1-AS1	-	SGMS1 antisense RNA 1	ncRNA
30684	chr10	80518451	80518750	+	0	NA	3' UTR (NM_001351267, exon 11 of 11)	3' UTR (NM_001351267, exon 11 of 11)	17342	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
7685	chr1	35881771	35882130	+	0	NA	intron (NM_001317123, intron 1 of 18)	intron (NM_001317123, intron 1 of 18)	-1245	NM_001317122	26523		NM_012199	ENSG00000092847	AGO1	EIF2C|EIF2C1|GERP95|NEDLBAS|Q99|hAgo1	argonaute RISC component 1	protein-coding
209981	chr7	92830371	92831130	+	0	NA	intron (NM_001145306, intron 2 of 7)	intron (NM_001145306, intron 2 of 7)	3209	NM_001259	1021		NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding
134647	chr2	144442001	144442400	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-77414	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
90057	chr16	89938851	89939150	+	0	NA	Intergenic	LTR33|LTR|ERVL	-9731	NM_001242821	54849		NM_017702	ENSG00000140995	DEF8	-	differentially expressed in FDCP 8 homolog	protein-coding
52776	chr12	56684951	56686290	+	0	NA	intron (NM_001282601, intron 1 of 6)	AluY|SINE|Alu	2664	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
204649	chr7	5423901	5424930	+	0	NA	promoter-TSS (NM_001080495)	promoter-TSS (NM_001080495)	-869	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
42907	chr11	73383871	73384130	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	7332	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
57780	chr12	123035001	123035200	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-24372	NR_036187	100422931		NR_036187	ENSG00000265526	MIR4304	-	microRNA 4304	ncRNA
69575	chr14	97077371	97077750	+	0	NA	Intergenic	Intergenic	-77297	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
38392	chr11	44894121	44894480	+	0	NA	intron (NM_130783, intron 3 of 9)	intron (NM_130783, intron 3 of 9)	55860	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
77110	chr15	78933501	78933900	+	0	NA	intron (NM_001319137, intron 6 of 12)	MIRc|SINE|MIR	11346	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
225734	chr9	37029801	37030000	+	0	NA	intron (NR_103999, intron 1 of 8)	MIR3|SINE|MIR	4368	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
84482	chr16	30482171	30482800	+	0	NA	intron (NM_002209, intron 7 of 30)	L2|LINE|L2	9743	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
21070	chr1	203302051	203302750	+	0	NA	intron (NR_034150, intron 1 of 2)	AluSc|SINE|Alu	2925	NR_034150	730227		NR_034150	ENSG00000233791	BTG2-DT	LINC01136	BTG2 divergent transcript	ncRNA
98291	chr17	46226571	46226900	+	0	NA	Intergenic	AluSx|SINE|Alu	-1368	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
169837	chr3	177177721	177178180	+	0	NA	intron (NM_001374329, intron 1 of 15)	L2a|LINE|L2	18528	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
126200	chr2	26781721	26782250	+	0	NA	TTS (NM_017877)	TTS (NM_017877)	-4030	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
188936	chr5	160469251	160469350	+	0	NA	intron (NR_132748, intron 1 of 1)	AluSx|SINE|Alu	1049	NR_132748	107075116		NR_132748	ENSG00000253522	MIR3142HG	-	MIR3142 host gene	ncRNA
157259	chr22	43867951	43868130	+	0	NA	Intergenic	Intergenic	-5527	NM_014351	25830		NM_014351	ENSG00000130540	SULT4A1	BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1	sulfotransferase family 4A member 1	protein-coding
120872	chr19	45541151	45541450	+	0	NA	intron (NM_001017989, intron 1 of 1)	intron (NM_001017989, intron 1 of 1)	33821	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
1178	chr1	2226151	2226790	+	0	NA	Intergenic	Intergenic	-1849	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
62117	chr13	95480271	95480430	+	0	NA	intron (NR_046533, intron 3 of 3)	intron (NR_046533, intron 3 of 3)	46751	NM_182848	9071		NM_006984	ENSG00000134873	CLDN10	CPETRL3|HELIX|OSP-L|OSPL	claudin 10	protein-coding
196107	chr6	42369401	42370080	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	82311	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
189226	chr5	171897301	171897500	+	0	NA	intron (NM_012300, intron 5 of 12)	intron (NM_012300, intron 5 of 12)	109238	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
218543	chr8	54010421	54010880	+	0	NA	intron (NM_006756, intron 1 of 9)	(AATTT)n|Simple_repeat|Simple_repeat	11798	NM_006756	6917		NM_006756	ENSG00000187735	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A1	protein-coding
49885	chr12	39318171	39318600	+	0	NA	intron (NM_001378440, intron 28 of 36)	intron (NM_001378440, intron 28 of 36)	124735	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
194599	chr6	33454021	33455700	+	0	NA	intron (NM_152735, intron 1 of 1)	(TGT)n|Simple_repeat|Simple_repeat	284	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
71378	chr14	105502921	105503530	+	0	NA	Intergenic	Intergenic	11976	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
94435	chr17	29148651	29149850	+	0	NA	intron (NM_001346765, intron 2 of 42)	L2a|LINE|L2	-8861	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
236559	chrX	72272271	72273180	+	0	NA	exon (NM_001007, exon 7 of 7)	exon (NM_001007, exon 7 of 7)	4523	NM_001007	6191		NM_001007	ENSG00000198034	RPS4X	CCG2|DXS306|RPS4|S4|SCAR|SCR10|eS4	ribosomal protein S4 X-linked	protein-coding
106557	chr18	21684151	21684250	+	0	NA	TTS (NR_031565)	TTS (NR_031565)	682	NR_031565	100302135		NR_031565	ENSG00000221493	MIR320C1	MIR320C-1|MIRN320C1|hsa-mir-320c-1|mir-320c-1	microRNA 320c-1	ncRNA
143817	chr20	32478721	32478980	+	0	NA	intron (NM_001256798, intron 4 of 10)	AluJb|SINE|Alu	4640	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
82200	chr16	14978521	14978780	+	0	NA	intron (NM_001324019, intron 1 of 22)	AluJr|SINE|Alu	3624	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
130482	chr2	85558521	85558780	+	0	NA	TTS (NM_001311312)	TTS (NM_001311312)	2843	NM_001311312	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
71667	chr15	17082271	17082430	+	0	NA	Intergenic	AluYj4|SINE|Alu	-3200394	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
98562	chr17	47704951	47705050	+	0	NA	intron (NM_014726, intron 6 of 8)	MIRb|SINE|MIR	9736	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
225633	chr9	36329921	36330180	+	0	NA	Intergenic	L1ME3A|LINE|L1	-53072	NM_001190388	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
146879	chr20	51503101	51503780	+	0	NA	intron (NM_173091, intron 3 of 9)	MIRb|SINE|MIR	39279	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
51415	chr12	52011351	52012050	+	0	NA	intron (NM_001271856, intron 3 of 6)	AluJr4|SINE|Alu	1208	NM_001271856	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
94957	chr17	32126921	32128380	+	0	NA	Intergenic	Intergenic	-14804	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
66827	chr14	64763451	64764080	+	0	NA	intron (NM_001355436, intron 32 of 35)	intron (NM_001355436, intron 32 of 35)	21921	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
111845	chr19	4575521	4576380	+	0	NA	Intergenic	MIRb|SINE|MIR	-16266	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
17967	chr1	160446501	160447300	+	0	NA	Intergenic	Intergenic	46336	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
111370	chr19	3698201	3698730	+	0	NA	intron (NM_001300849, intron 1 of 16)	intron (NM_001300849, intron 1 of 16)	2003	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
105248	chr17	82419571	82420180	+	0	NA	exon (NM_001330542, exon 2 of 13)	exon (NM_001330542, exon 2 of 13)	-1289	NM_024648	79701		NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron dependent oxygenase domain containing 3	protein-coding
41453	chr11	66107051	66107380	+	0	NA	intron (NM_018026, intron 1 of 23)	L2a|LINE|L2	36943	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
26715	chr10	22666471	22667250	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	47248	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
173075	chr4	6191321	6191690	+	0	NA	intron (NM_144720, intron 1 of 12)	intron (NM_144720, intron 1 of 12)	3114	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
169496	chr3	169780721	169781180	+	0	NA	intron (NM_001185118, intron 5 of 8)	L2a|LINE|L2	6685	NM_001185119	55892		NM_018657	ENSG00000085274	MYNN	OSZF|SBBIZ1|ZBTB31|ZNF902	myoneurin	protein-coding
87003	chr16	68241171	68241530	+	0	NA	Intergenic	Intergenic	-4023	NM_001363551	23659		NM_012320	ENSG00000103066	PLA2G15	ACS|GXVPLA2|LLPL|LPLA2|LYPLA3	phospholipase A2 group XV	protein-coding
117874	chr19	32592971	32593150	+	0	NA	Intergenic	L1PA3|LINE|L1	11870	NM_004708	9141		NM_004708	ENSG00000105185	PDCD5	TFAR19	programmed cell death 5	protein-coding
133295	chr2	113598201	113598400	+	0	NA	TTS (NR_024005)	TTS (NR_024005)	3276	NR_024005	84771		NM_032685		DDX11L2	-	DEAD/H-box helicase 11 like 2 (pseudogene)	pseudo
219662	chr8	80494751	80495550	+	0	NA	intron (NM_023929, intron 1 of 6)	FLAM_C|SINE|Alu	8924	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
26674	chr10	22620151	22620980	+	0	NA	intron (NM_005028, intron 1 of 9)	MER102a|DNA|hAT-Charlie	93543	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
175786	chr4	77798051	77798150	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluJo|SINE|Alu	20964	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
126081	chr2	25813101	25814050	+	0	NA	intron (NM_018263, intron 2 of 11)	MER46C|DNA|TcMar-Tigger	17326	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
43391	chr11	77079751	77079850	+	0	NA	intron (NM_004055, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	12829	NM_004055	726		NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding
43856	chr11	88231901	88232130	+	0	NA	Intergenic	MIR|SINE|MIR	55513	NR_036124	100423040		NR_036124	ENSG00000266581	MIR3166	-	microRNA 3166	ncRNA
42336	chr11	68496301	68496930	+	0	NA	intron (NM_001352362, intron 2 of 24)	AluSz6|SINE|Alu	35863	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
73557	chr15	44290251	44290500	+	0	NA	intron (NM_177974, intron 1 of 8)	intron (NM_177974, intron 1 of 8)	1656	NM_177974	113201		NM_138423	ENSG00000166734	GOLM2	CASC4|H63	golgi membrane protein 2	protein-coding
215659	chr8	544771	545130	+	0	NA	promoter-TSS (NM_001256113)	promoter-TSS (NM_001256113)	-116	NM_001256113	157695		NM_175075	ENSG00000180190	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
145993	chr20	46399121	46399850	+	0	NA	intron (NM_001318253, intron 1 of 21)	L2c|LINE|L2	7130	NM_001318253	63916		NM_022086	ENSG00000062598	ELMO2	CED-12|CED12|Ced-12A|ELMO-2|VMPI	engulfment and cell motility 2	protein-coding
18900	chr1	168342421	168343580	+	0	NA	Intergenic	Intergenic	-32524	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
87669	chr16	74599601	74600200	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluSx1|SINE|Alu	7214	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
125567	chr2	16149021	16149480	+	0	NA	Intergenic	Intergenic	98823	NR_126559	104797537		NR_126559	ENSG00000236289	GACAT3	LINC01458|lncRNA-AC130710	gastric cancer associated transcript 3	ncRNA
183955	chr5	88250801	88251430	+	0	NA	intron (NM_001289007, intron 1 of 12)	LTR8B|LTR|ERV1	17730	NM_153354	153396		NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
35837	chr11	2301101	2303250	+	0	NA	promoter-TSS (NM_001142946)	promoter-TSS (NM_001142946)	162	NM_139022	10077		NM_005705	ENSG00000064201	TSPAN32	ART1|PHEMX|PHMX|TSSC6	tetraspanin 32	protein-coding
111527	chr19	4016551	4017050	+	0	NA	intron (NM_015897, intron 2 of 10)	L2c|LINE|L2	9064	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
128893	chr2	64136501	64137230	+	0	NA	intron (NM_020651, intron 1 of 6)	AluSc|SINE|Alu	7555	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
11703	chr1	91858921	91859180	+	0	NA	intron (NR_036634, intron 2 of 17)	AluSz6|SINE|Alu	27101	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
235028	chrX	40027001	40027450	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	70733	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
169468	chr3	169146351	169146680	+	0	NA	promoter-TSS (NM_001366468)	promoter-TSS (NM_001366468)	24	NM_001366468	2122		NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding
215909	chr8	8167301	8168200	+	0	NA	intron (NR_147089, intron 2 of 3)	intron (NR_147089, intron 2 of 3)	59753	NR_147089	105379219		NR_147089		FAM85B	lncRNA-HEIM	family with sequence similarity 85 member B	ncRNA
26927	chr10	26477571	26478630	+	0	NA	intron (NM_019043, intron 2 of 14)	L2b|LINE|L2	39759	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
104624	chr17	81431451	81432300	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	19313	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
65201	chr14	49687501	49688750	+	0	NA	promoter-TSS (NM_001197331)	promoter-TSS (NM_001197331)	89	NM_002692	5427		NM_002692	ENSG00000100479	POLE2	DPE2	DNA polymerase epsilon 2, accessory subunit	protein-coding
61209	chr13	49498071	49499080	+	0	NA	intron (NR_135323, intron 2 of 11)	intron (NR_135323, intron 2 of 11)	1519	NM_001040444	51131		NM_001040443	ENSG00000136147	PHF11	APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34	PHD finger protein 11	protein-coding
97374	chr17	43320501	43320700	+	0	NA	Intergenic	AluSg7|SINE|Alu	-20369	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
19952	chr1	184844951	184845050	+	0	NA	intron (NM_052966, intron 5 of 13)	intron (NM_052966, intron 5 of 13)	-90142	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
183605	chr5	80207801	80208730	+	0	NA	intron (NM_001174072, intron 1 of 11)	L1MC1|LINE|L1	47783	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
107076	chr18	34866451	34866750	+	0	NA	3' UTR (NM_032981, exon 8 of 8)	3' UTR (NM_032981, exon 8 of 8)	48219	NM_032981	1837		NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding
153163	chr22	23788851	23789350	+	0	NA	intron (NM_003073, intron 1 of 8).2	AluSz|SINE|Alu	2134	NM_001007468	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
12735	chr1	109553351	109553650	+	0	NA	intron (NM_006496, intron 1 of 8)	intron (NM_006496, intron 1 of 8)	4885	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
221595	chr8	125505751	125506400	+	0	NA	Intergenic	Intergenic	73866	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
141420	chr2	240981001	240981230	+	0	NA	intron (NM_001351305, intron 27 of 31)	intron (NM_001351305, intron 27 of 31)	-13664	NR_033841	200772		NR_033841	ENSG00000233392	UICLM	CROCC2-AS1	up-regulated in colorectal cancer liver metastasis	ncRNA
125710	chr2	20444771	20445880	+	0	NA	Intergenic	L2b|LINE|L2	-1749	NM_004040	388		NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding
174452	chr4	39710301	39710930	+	0	NA	intron (NM_001111113, intron 1 of 4)	MIRb|SINE|MIR	12479	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
183861	chr5	87182371	87182850	+	0	NA	intron (NR_105018, intron 2 of 3)	MIRc|SINE|MIR	56591	NR_130914	55338		NM_018382		LINC01949	-	long intergenic non-protein coding RNA 1949	ncRNA
6352	chr1	27774951	27775250	+	0	NA	intron (NM_177424, intron 1 of 8)	intron (NM_177424, intron 1 of 8)	1881	NM_177424	23673		NM_177424	ENSG00000117758	STX12	STX13|STX14	syntaxin 12	protein-coding
50514	chr12	47825371	47825950	+	0	NA	Intergenic	Intergenic	-5757	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
97	chr1	419351	419450	+	0	NA	Intergenic	L1M4|LINE|L1	32278	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
8647	chr1	41791721	41792300	+	0	NA	intron (NM_024503, intron 1 of 8)	L2c|LINE|L2	126912	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
83193	chr16	23499921	23500400	+	0	NA	intron (NM_015044, intron 1 of 16)	intron (NM_015044, intron 1 of 16)	10334	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
35014	chr11	549721	549980	+	0	NA	intron (NM_198075, intron 6 of 13)	intron (NM_198075, intron 6 of 13)	-9412	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
114258	chr19	11551751	11552500	+	0	NA	TTS (NM_001363675)	TTS (NM_001363675)	3342	NM_001363673	84337		NM_032377	ENSG00000130165	ELOF1	ELF1	elongation factor 1	protein-coding
58698	chr12	132557971	132558500	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-23762	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
218270	chr8	42256671	42257030	+	0	NA	intron (NR_125823, intron 2 of 2)	MER31-int|LTR|ERV1	14111	NR_125823	101929897		NR_125823	ENSG00000253408	IKBKB-DT	ALAL-1|IKBKBAS	IKBKB divergent transcript	ncRNA
179365	chr4	183409071	183409650	+	0	NA	Intergenic	Intergenic	-35276	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
59431	chr13	25737921	25738600	+	0	NA	intron (NM_016529, intron 25 of 36)	intron (NM_016529, intron 25 of 36)	269486	NM_001313741	51761		NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
159179	chr3	12832471	12832700	+	0	NA	intron (NM_012298, intron 12 of 12)	MER46C|DNA|TcMar-Tigger	7865	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
232176	chr9	134176271	134176750	+	0	NA	Intergenic	Intergenic	-11946	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
104723	chr17	81614371	81615230	+	0	NA	intron (NM_001369698, intron 3 of 16)	intron (NM_001369698, intron 3 of 16)	22312	NM_017921	55666		NM_017921	ENSG00000182446	NPLOC4	NPL4	NPL4 homolog, ubiquitin recognition factor	protein-coding
39466	chr11	60982671	60983430	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	11370	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
8708	chr1	42319451	42320550	+	0	NA	intron (NM_001198851, intron 2 of 14)	intron (NM_001198851, intron 2 of 14)	14955	NM_001198851	22887		NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
115002	chr19	14056421	14056750	+	0	NA	intron (NM_001145028, intron 4 of 6)	intron (NM_001145028, intron 4 of 6)	1053	NM_001367327	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
132670	chr2	108773821	108774080	+	0	NA	intron (NM_006267, intron 23 of 28)	L1MD|LINE|L1	-12800	NR_147238	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
151421	chr21	46098641	46100080	+	0	NA	intron (NM_001849, intron 1 of 27)	AluSx1|SINE|Alu	1241	NM_058175	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
197518	chr6	75823921	75824780	+	0	NA	intron (NR_160538, intron 3 of 32)	intron (NR_160538, intron 3 of 32)	75111	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
113738	chr19	10483521	10484230	+	0	NA	Intergenic	AluSx|SINE|Alu	18896	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
62040	chr13	89066951	89067150	+	0	NA	Intergenic	Intergenic	-168241	NR_047025	100874172		NR_047025		LINC00440	-	long intergenic non-protein coding RNA 440	ncRNA
199357	chr6	116096571	116097500	+	0	NA	Intergenic	Intergenic	-3818	NM_152729	221294		NM_152729	ENSG00000178425	NT5DC1	C6orf200|LP2642|NT5C2L1	5'-nucleotidase domain containing 1	protein-coding
146897	chr20	51533921	51534180	+	0	NA	intron (NM_001258292, intron 1 of 9)	intron (NM_001258292, intron 1 of 9)	8669	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
179900	chr5	677901	678530	+	0	NA	intron (NM_007030, intron 1 of 3)	intron (NM_007030, intron 1 of 3)	15137	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
164024	chr3	53224801	53225000	+	0	NA	TTS (NR_047580)	TTS (NR_047580)	31122	NM_001064	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
75367	chr15	65610651	65612350	+	0	NA	promoter-TSS (NM_001366365)	promoter-TSS (NM_001366365)	150	NM_001301033	9187		NM_004727	ENSG00000074621	SLC24A1	CSNB1D|HsT17412|NCKX|NCKX1|RODX	solute carrier family 24 member 1	protein-coding
127527	chr2	42314901	42315100	+	0	NA	intron (NM_019063, intron 17 of 22)	Tigger19b|DNA|TcMar-Tigger	45038	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
32567	chr10	103428921	103429800	+	0	NA	intron (NM_014976, intron 21 of 35)	intron (NM_014976, intron 21 of 35)	23010	NR_046344	51063		NM_015916	ENSG00000138172	CALHM2	FAM26B	calcium homeostasis modulator family member 2	protein-coding
144633	chr20	35944101	35944500	+	0	NA	intron (NM_016436, intron 17 of 17)	intron (NM_016436, intron 17 of 17)	10202	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
167676	chr3	130093551	130094130	+	0	NA	intron (NM_001136152, intron 4 of 7)	intron (NM_001136152, intron 4 of 7)	464	NR_146710	105374105		NR_146710		LINC02014	-	long intergenic non-protein coding RNA 2014	ncRNA
157883	chr22	49727951	49728250	+	0	NA	Intergenic	Intergenic	-70581	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
33271	chr10	114522051	114522380	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	4698	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
46833	chr11	131691651	131691750	+	0	NA	intron (NM_001352006, intron 2 of 9)	CpG	-28144	NR_126159	101929637		NM_207432		NTM-AS1	C11orf39	NTM antisense RNA 1	ncRNA
179650	chr4	189307771	189307930	+	0	NA	Intergenic	CpG	-351756	NR_121679	101928971		NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
17749	chr1	159008521	159009200	+	0	NA	promoter-TSS (NM_001376589)	promoter-TSS (NM_001376589)	-131	NM_001376589	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
93372	chr17	18245021	18245480	+	0	NA	TTS (NM_004140).2	TTS (NM_004140).2	13488	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
11135	chr1	86708371	86708530	+	0	NA	intron (NM_001206653, intron 1 of 7)	intron (NM_001206653, intron 1 of 7)	3874	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
136215	chr2	174581121	174582730	+	0	NA	intron (NM_001375837, intron 2 of 4)	intron (NM_001375837, intron 2 of 4)	15879	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
77047	chr15	78811421	78812400	+	0	NA	promoter-TSS (NM_014272)	promoter-TSS (NM_014272)	-446	NM_014272	11173		NM_014272	ENSG00000136378	ADAMTS7	ADAM-TS 7|ADAM-TS7|ADAMTS-7	ADAM metallopeptidase with thrombospondin type 1 motif 7	protein-coding
12103	chr1	100034371	100035250	+	0	NA	3' UTR (NM_012243, exon 8 of 8)	3' UTR (NM_012243, exon 8 of 8)	-3285	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
67243	chr14	68973201	68973800	+	0	NA	intron (NM_001130004, intron 1 of 21)	THE1C|LTR|ERVL-MaLR	5802	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
43699	chr11	85954951	85955050	+	0	NA	Intergenic	AluJb|SINE|Alu	99617	NM_001286159	220047		NM_173556	ENSG00000150676	CCDC83	CT148|HSD9|KP-CoT-23	coiled-coil domain containing 83	protein-coding
203275	chr6	169724001	169725580	+	0	NA	promoter-TSS (NM_018288)	promoter-TSS (NM_018288)	-290	NM_018288	55274		NM_018288	ENSG00000130024	PHF10	BAF45A|SMARCG4|XAP135	PHD finger protein 10	protein-coding
66446	chr14	61540971	61541330	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	29044	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
93901	chr17	21248471	21248900	+	0	NA	intron (NM_152914, intron 1 of 2)	intron (NM_152914, intron 1 of 2)	4725	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
237068	chrX	103585471	103586280	+	0	NA	5' UTR (NM_001305840, exon 2 of 4)	5' UTR (NM_001305840, exon 2 of 4)	360	NM_001006935	79921		NM_024863	ENSG00000133142	TCEAL4	NPD017|WEX7	transcription elongation factor A like 4	protein-coding
159222	chr3	12904871	12905180	+	0	NA	intron (NM_014869, intron 12 of 13)	intron (NM_014869, intron 12 of 13)	-19814	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
7143	chr1	32210951	32211450	+	0	NA	intron (NM_001099434, intron 1 of 8)	intron (NM_001099434, intron 1 of 8)	2106	NM_001099434	149069		NM_001099434	ENSG00000222046	DCDC2B	-	doublecortin domain containing 2B	protein-coding
144734	chr20	36582201	36582900	+	0	NA	intron (NM_001199535, intron 2 of 4)	intron (NM_001199535, intron 2 of 4)	7996	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
158932	chr3	10124371	10124530	+	0	NA	intron (NM_018462, intron 1 of 2)	AluSc|SINE|Alu	8775	NM_018462	55845		NM_018462	ENSG00000254999	BRK1	C3orf10|HSPC300|MDS027|hHBrk1	BRICK1 subunit of SCAR/WAVE actin nucleating complex	protein-coding
48272	chr12	8694421	8694680	+	0	NA	intron (NM_001352267, intron 1 of 5)	AluSx1|SINE|Alu	-2633	NM_001352268	57494		NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding
99145	chr17	49343301	49345030	+	0	NA	intron (NR_135579, intron 1 of 7)	AluYm1|SINE|Alu	-17000	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
92397	chr17	8308571	8308850	+	0	NA	Intergenic	AluSp|SINE|Alu	-1531	NM_173728	22899		NM_025014	ENSG00000198844	ARHGEF15	ARGEF15|E5|Ephexin5|Vsm-RhoGEF	Rho guanine nucleotide exchange factor 15	protein-coding
186538	chr5	138445871	138446230	+	0	NA	non-coding (NR_073449, exon 8 of 8)	non-coding (NR_073449, exon 8 of 8)	6993	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
124392	chr19	58397551	58397950	+	0	NA	TTS (NM_001195135)	TTS (NM_001195135)	1660	NM_001195135	646862		NM_001195135	ENSG00000269855	RNF225	-	ring finger protein 225	protein-coding
217595	chr8	29614671	29614830	+	0	NA	Intergenic	Intergenic	133359	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
192273	chr6	20405521	20405880	+	0	NA	intron (NM_001243076, intron 1 of 6)	AluSc|SINE|Alu	2021	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
143254	chr20	25065501	25066100	+	0	NA	Intergenic	Intergenic	-7618	NM_001252675	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
103451	chr17	78279171	78279330	+	0	NA	promoter-TSS (NR_073178)	promoter-TSS (NR_073178)	-758	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
23376	chr1	228171301	228171880	+	0	NA	intron (NM_001010867, intron 1 of 2)	intron (NM_001010867, intron 1 of 2)	-2980	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
187181	chr5	140647101	140648630	+	0	NA	promoter-TSS (NM_001185012)	promoter-TSS (NM_001185012)	21	NR_037428	100500820		NR_037428	ENSG00000284325	MIR3655	-	microRNA 3655	ncRNA
47163	chr12	774251	774750	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	21577	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
154185	chr22	31339321	31340030	+	0	NA	intron (NM_014323, intron 2 of 4)	intron (NM_014323, intron 2 of 4)	4326	NR_110542	101929760		NR_110542	ENSG00000228839	PIK3IP1-DT	PIK3IP1-AS1	PIK3IP1 divergent transcript	ncRNA
16541	chr1	154954851	154955700	+	0	NA	intron (NM_020524, intron 1 of 10)	intron (NM_020524, intron 1 of 10)	824	NM_020524	57326		NM_020524	ENSG00000163346	PBXIP1	HPIP	PBX homeobox interacting protein 1	protein-coding
146436	chr20	49661621	49662380	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	51878	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
151233	chr21	45269801	45270200	+	0	NA	exon (NM_015227, exon 7 of 8)	exon (NM_015227, exon 7 of 8)	17895	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
194577	chr6	33420951	33422080	+	0	NA	intron (NM_006772, intron 1 of 18).2	intron (NM_006772, intron 1 of 18).2	1450	NM_006772	8831		NM_006772	ENSG00000197283	SYNGAP1	MRD5|RASA1|RASA5|SYNGAP	synaptic Ras GTPase activating protein 1	protein-coding
5689	chr1	26361721	26362180	+	0	NA	exon (NM_001114759, exon 6 of 6)	exon (NM_001114759, exon 6 of 6)	-7820	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
102168	chr17	75135301	75135500	+	0	NA	non-coding (NR_109933, exon 5 of 5)	non-coding (NR_109933, exon 5 of 5)	-3605	NM_001252377	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
181063	chr5	36265421	36265700	+	0	NA	intron (NM_001323277, intron 4 of 12)	intron (NM_001323277, intron 4 of 12)	-23281	NM_153013	133686		NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
75678	chr15	67825171	67826250	+	0	NA	intron (NM_001365915, intron 1 of 8)	CpG-8353	201	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
238430	chrX	150897851	150899170	+	0	NA	intron (NM_134445, intron 1 of 7)	CpG	158	NM_031462	83692		NM_031462	ENSG00000102181	CD99L2	CD99B|MIC2L1	CD99 molecule like 2	protein-coding
176554	chr4	98518821	98519080	+	0	NA	intron (NM_005723, intron 1 of 7)	L2c|LINE|L2	139661	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
61925	chr13	78023251	78023550	+	0	NA	intron (NR_047028, intron 2 of 5)	L2b|LINE|L2	10517	NR_047028	100874175		NR_047028		LINC00446	-	long intergenic non-protein coding RNA 446	ncRNA
208483	chr7	67191501	67191900	+	0	NA	intron (NM_018264, intron 14 of 15)	intron (NM_018264, intron 14 of 15)	-77303	NR_039793	100616310		NR_039793	ENSG00000266525	MIR4650-1	-	microRNA 4650-1	ncRNA
192540	chr6	25135071	25135230	+	0	NA	intron (NR_027626, intron 2 of 6)	MER4-int|LTR|ERV1	2673	NR_002174	8418		NM_003570	ENSG00000293489	CMAHP	CMAH|CSAH	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudo
205408	chr7	16455521	16455880	+	0	NA	Intergenic	Intergenic	10038	NM_015464	25928		NM_015464	ENSG00000171243	SOSTDC1	CDA019|DAND7|ECTODIN|USAG1	sclerostin domain containing 1	protein-coding
19111	chr1	171495771	171496400	+	0	NA	intron (NM_015172, intron 1 of 33)	MLT1A|LTR|ERVL-MaLR	10555	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
131484	chr2	96506401	96506600	+	0	NA	intron (NR_104346, intron 1 of 3)	AluJr|SINE|Alu	-1143	NM_001285486	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
13265	chr1	112720201	112720400	+	0	NA	intron (NR_169586, intron 1 of 5)	intron (NR_169586, intron 1 of 5)	1395	NR_169586	284467		NM_182759	ENSG00000184599	TAFA3	FAM19A3|TAFA-3	TAFA chemokine like family member 3	protein-coding
45434	chr11	118414801	118415000	+	0	NA	intron (NR_046369, intron 3 of 3)	AluSz6|SINE|Alu	3915	NR_046370	100131626		NR_046369		LOC100131626	-	uncharacterized LOC100131626	ncRNA
52572	chr12	56166921	56167300	+	0	NA	intron (NM_003075, intron 25 of 27)	AluSp|SINE|Alu	8751	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
174627	chr4	40308201	40308600	+	0	NA	intron (NR_121641, intron 2 of 3)	intron (NR_121641, intron 2 of 3)	1215	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
78658	chr15	94306671	94307900	+	0	NA	intron (NM_001385007, intron 4 of 24)	L2a|LINE|L2	-48645	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
51176	chr12	50218821	50219350	+	0	NA	intron (NM_001113547, intron 1 of 7)	intron (NM_001113547, intron 1 of 7)	3573	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
28762	chr10	62031351	62032250	+	0	NA	intron (NM_032199, intron 4 of 9)	MER102b|DNA|hAT-Charlie	-17557	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
21825	chr1	207331221	207332030	+	0	NA	intron (NM_001300904, intron 6 of 10)	intron (NM_001300904, intron 6 of 10)	9947	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
214460	chr7	150340051	150340880	+	0	NA	exon (NM_002889, exon 2 of 6)	exon (NM_002889, exon 2 of 6)	1164	NM_002889	5919		NM_002889	ENSG00000106538	RARRES2	HP10433|TIG2	retinoic acid receptor responder 2	protein-coding
54141	chr12	76545651	76545750	+	0	NA	intron (NM_001319652, intron 1 of 25)	intron (NM_001319652, intron 1 of 25)	14071	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
119117	chr19	39344701	39345380	+	0	NA	intron (NM_001303614, intron 1 of 12)	MER5A|DNA|hAT-Charlie	2619	NM_001384565	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
159197	chr3	12874251	12874550	+	0	NA	Intergenic	Intergenic	10811	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
138414	chr2	205076621	205077780	+	0	NA	intron (NM_205863, intron 4 of 21)	intron (NM_205863, intron 4 of 21)	531725	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
181369	chr5	40591751	40592050	+	0	NA	Intergenic	L1PA15|LINE|L1	-88015	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
45252	chr11	117992001	117992630	+	0	NA	intron (NM_001558, intron 3 of 6)	L1MA7|LINE|L1	5921	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
214791	chr7	151125771	151125930	+	0	NA	intron (NM_001350103, intron 10 of 18)	CpG	11212	NM_001308305	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
19818	chr1	182782021	182782650	+	0	NA	Intergenic	LTR88a|LTR|Gypsy?	-7114	NM_001200052	80896		NM_030769	ENSG00000135838	NPL	C112|C1orf13|NAL|NPL1	N-acetylneuraminate pyruvate lyase	protein-coding
132808	chr2	110475751	110476200	+	0	NA	Intergenic	MER21B|LTR|ERVL	-2900	NR_038099	100288695		NM_001205288	ENSG00000256671	LIMS4	LIMS3L	LIM zinc finger domain containing 4	protein-coding
86338	chr16	66474321	66475480	+	0	NA	intron (NR_109960, intron 2 of 2)	MIRb|SINE|MIR	1502	NR_109960	101927726		NR_109960	ENSG00000261656	BEAN1-AS1	CTD-2258A20.5	BEAN1 antisense RNA 1	ncRNA
124143	chr19	55696451	55696750	+	0	NA	TTS (NM_001130071)	TTS (NM_001130071)	19975	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
236385	chrX	71100921	71101980	+	0	NA	exon (NM_001170931, exon 3 of 4)	exon (NM_001170931, exon 3 of 4)	5290	NR_033212	158830		NM_001025265	ENSG00000204165	CXorf65	-	chromosome X open reading frame 65	protein-coding
13290	chr1	113051021	113051280	+	0	NA	intron (NR_103777, intron 1 of 2)	L1ME1|LINE|L1	21952	NR_103777	100996251		NR_103777	ENSG00000238198	LRIG2-DT	-	LRIG2 divergent transcript	ncRNA
201413	chr6	146543501	146543850	+	0	NA	promoter-TSS (NM_006834)	promoter-TSS (NM_006834)	-158	NM_006834	10981		NM_006834	ENSG00000118508	RAB32	-	RAB32, member RAS oncogene family	protein-coding
194320	chr6	32835621	32836000	+	0	NA	intron (NM_000544, intron 3 of 11)	intron (NM_000544, intron 3 of 11)	2929	NM_001290043	6891		NM_000544	ENSG00000204267	TAP2	ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11	transporter 2, ATP binding cassette subfamily B member	protein-coding
54848	chr12	95239771	95239930	+	0	NA	intron (NM_001352100, intron 2 of 12)	AluSz|SINE|Alu	22043	NM_001352119	55591		NM_017599	ENSG00000028203	VEZT	VEZATIN	vezatin, adherens junctions transmembrane protein	protein-coding
202690	chr6	158802771	158803150	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-15019	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
1218	chr1	2267021	2267280	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	38831	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
96515	chr17	40331871	40332250	+	0	NA	intron (NM_001145302, intron 2 of 6)	intron (NM_001145302, intron 2 of 6)	-10106	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
61717	chr13	74113251	74113550	+	0	NA	intron (NM_007249, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	20529	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
95480	chr17	36206571	36206930	+	0	NA	Intergenic	L2c|LINE|L2	-4158	NM_207007	388372		NM_207007		CCL4L1	AT744.2|CCL4L|LAG-1|LAG1|MIP-1-beta|SCYA4L|SCYA4L1|SCYA4L2	C-C motif chemokine ligand 4 like 1	protein-coding
156738	chr22	41810151	41810250	+	0	NA	intron (NM_001304797, intron 3 of 3)	intron (NM_001304797, intron 3 of 3)	9521	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
102196	chr17	75171071	75171230	+	0	NA	intron (NM_001005849, intron 2 of 2)	AluSp|SINE|Alu	11809	NM_001005849	6613		NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin like modifier 2	protein-coding
127845	chr2	45578501	45578730	+	0	NA	intron (NM_018079, intron 7 of 20)	intron (NM_018079, intron 7 of 20)	32652	NM_018079	55133		NM_018079	ENSG00000068784	SRBD1	-	S1 RNA binding domain 1	protein-coding
36310	chr11	3854301	3856500	+	0	NA	promoter-TSS (NR_168437)	promoter-TSS (NR_168437)	237	NM_001382577	6786		NM_003156	ENSG00000167323	STIM1	D11S4896E|GOK|IMD10|STRMK|TAM|TAM1	stromal interaction molecule 1	protein-coding
226440	chr9	71660401	71660600	+	0	NA	Intergenic	L1MCa|LINE|L1	108013	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
127370	chr2	39266171	39266730	+	0	NA	intron (NM_003618, intron 27 of 33)	L2c|LINE|L2	-22467	NR_144521	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
87361	chr16	70389271	70389630	+	0	NA	intron (NM_006927, intron 3 of 6)	AluSc8|SINE|Alu	42547	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
202946	chr6	160989801	160990280	+	0	NA	Intergenic	Intergenic	-1687	NM_001363582	4216		NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding
98766	chr17	48114401	48115230	+	0	NA	intron (NM_152244, intron 5 of 7)	AluSq|SINE|Alu	7049	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
48625	chr12	10380701	10381050	+	0	NA	intron (NR_120430, intron 3 of 3)	L1M2|LINE|L1	9166	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
50226	chr12	46229971	46230530	+	0	NA	intron (NM_001278387, intron 4 of 17)	L2a|LINE|L2	36266	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
72485	chr15	32613551	32614240	+	0	NA	intron (NR_135833, intron 1 of 2)	L3|LINE|CR1	851	NR_135833	101928042		NR_135833		ARHGAP11A-DT	-	ARHGAP11A divergent transcript	ncRNA
224993	chr9	33110751	33111450	+	0	NA	3' UTR (NM_001497, exon 6 of 6)	3' UTR (NM_001497, exon 6 of 6)	2408	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
135705	chr2	168972671	168972830	+	0	NA	intron (NM_003742, intron 13 of 27)	intron (NM_003742, intron 13 of 27)	58574	NM_003742	8647		NM_003742	ENSG00000073734	ABCB11	ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP	ATP binding cassette subfamily B member 11	protein-coding
183348	chr5	76819771	76820130	+	0	NA	intron (NM_005242, intron 1 of 1)	CpG	920	NM_005242	2150		NM_005242	ENSG00000164251	F2RL1	GPR11|PAR2	F2R like trypsin receptor 1	protein-coding
121874	chr19	48321051	48322780	+	0	NA	promoter-TSS (NM_001364171)	promoter-TSS (NM_001364171)	56	NM_001364171	93233		NM_144577	ENSG00000105479	ODAD1	CCDC114|CILD20	outer dynein arm docking complex subunit 1	protein-coding
105139	chr17	82238101	82239500	+	0	NA	TTS (NM_001363749)	TTS (NM_001363749)	2132	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
235137	chrX	41088851	41089150	+	0	NA	intron (NM_001039590, intron 1 of 44)	MER5B|DNA|hAT-Charlie	3555	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
74501	chr15	60174401	60174600	+	0	NA	Intergenic	MIR|SINE|MIR	170189	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
10632	chr1	70203571	70203930	+	0	NA	intron (NM_017768, intron 1 of 14)	intron (NM_017768, intron 1 of 14)	1829	NM_017768	55631		NM_017768	ENSG00000066557	LRRC40	dJ677H15.1	leucine rich repeat containing 40	protein-coding
383	chr1	1041821	1042350	+	0	NA	exon (NM_001364727, exon 6 of 36)	exon (NM_001364727, exon 6 of 36)	8092	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
237096	chrX	104099051	104099230	+	0	NA	TTS (NM_001012755)	TTS (NM_001012755)	-13383	NR_026694	644353		NM_001143978	ENSG00000166707	ZCCHC18	PNMA7B|SIZN2	zinc finger CCHC-type containing 18	protein-coding
212822	chr7	130433071	130433630	+	0	NA	intron (NM_001257160, intron 1 of 2)	intron (NM_001257160, intron 1 of 2)	7666	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
85041	chr16	31868501	31869100	+	0	NA	Intergenic	Intergenic	-5007	NM_003414	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
53597	chr12	68028351	68028700	+	0	NA	Intergenic	Intergenic	39080	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
81049	chr16	4315301	4316570	+	0	NA	promoter-TSS (NM_032575).2	promoter-TSS (NM_032575).2	-132	NM_032575	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
175582	chr4	75662271	75662630	+	0	NA	intron (NM_203505, intron 1 of 11)	AluSp|SINE|Alu	10709	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
116163	chr19	17399621	17400050	+	0	NA	Intergenic	MIR|SINE|MIR	5795	NM_004335	684		NM_004335	ENSG00000130303	BST2	CD317|HM1.24|TETHERIN	bone marrow stromal cell antigen 2	protein-coding
164942	chr3	71232501	71232900	+	0	NA	intron (NM_001012505, intron 5 of 6)	AluJb|SINE|Alu	12377	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
79564	chr16	979851	980150	+	0	NA	non-coding (NR_164337, exon 1 of 2)	non-coding (NR_164337, exon 1 of 2)	1613	NR_164339	115804232		NR_036442	ENSG00000260807	CEROX1	-	cytoplasmic endogenous regulator of oxidative phosphorylation 1	ncRNA
35638	chr11	1839301	1839500	+	0	NA	promoter-TSS (NM_001145829)	promoter-TSS (NM_001145829)	-69	NM_001145829	7136		NM_003282	ENSG00000130598	TNNI2	AMCD2B|DA2B|DA2B1|FSSV|fsTnI	troponin I2, fast skeletal type	protein-coding
189393	chr5	172744321	172744830	+	0	NA	Intergenic	Intergenic	-10928	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
92027	chr17	7477401	7478090	+	0	NA	intron (NM_020899, intron 1 of 3)	intron (NM_020899, intron 1 of 3)	1886	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
232238	chr9	134387051	134387750	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	7989	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
158164	chr22	50206671	50207600	+	0	NA	intron (NM_031454, intron 2 of 8)	AluSx|SINE|Alu	6124	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
10415	chr1	65309171	65309330	+	0	NA	promoter-TSS (NM_001256864)	promoter-TSS (NM_001256864)	-293	NM_001256864	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
96134	chr17	39661871	39662350	+	0	NA	intron (NM_001165938, intron 12 of 13)	intron (NM_001165938, intron 12 of 13)	-3239	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
118638	chr19	37293051	37293150	+	0	NA	Intergenic	Intergenic	-19737	NR_138103	284459		NM_181786	ENSG00000181666	ZNF875	HKR1	zinc finger protein 875	protein-coding
123894	chr19	55328801	55329550	+	0	NA	Intergenic	L1MB7|LINE|L1	-3834	NM_001282011	284417		NM_001085488	ENSG00000180061	TMEM150B	DRAM3|TMEM224|TTN2	transmembrane protein 150B	protein-coding
111435	chr19	3803521	3803900	+	0	NA	TTS (NM_015174)	TTS (NM_015174)	-1911	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
140954	chr2	237858371	237858830	+	0	NA	Intergenic	Intergenic	-1023	NM_001308353	10267		NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding
113529	chr19	10135551	10135850	+	0	NA	intron (NM_001318730, intron 38 of 39)	intron (NM_001318730, intron 38 of 39)	-15801	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
216001	chr8	8917471	8918300	+	0	NA	Intergenic	Intergenic	-24255	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
226054	chr9	61312351	61312450	+	0	NA	Intergenic	AluYa5|SINE|Alu	106994	NR_110999	653123		NR_110999	ENSG00000293072	FAM74A6	-	family with sequence similarity 74 member A6	ncRNA
185414	chr5	129904021	129904980	+	0	NA	promoter-TSS (NM_175856)	promoter-TSS (NM_175856)	35	NM_175856	337876		NM_175856	ENSG00000198108	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
182883	chr5	70026771	70027330	+	0	NA	intron (NM_022978, intron 2 of 2).5	intron (NM_022978, intron 2 of 2).5	1799	NM_021967	8293		NM_021967	ENSG00000172058	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A	protein-coding
106500	chr18	15001451	15001550	+	0	NA	Intergenic	Intergenic	-31032	NR_110783	101927642		NR_110783	ENSG00000264301	LINC01444	-	long intergenic non-protein coding RNA 1444	ncRNA
109703	chr19	1058251	1059150	+	0	NA	exon (NM_019112, exon 38 of 47)	exon (NM_019112, exon 38 of 47)	-7259	NM_001258328	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
69603	chr14	97432671	97433250	+	0	NA	Intergenic	Intergenic	-25856	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
140604	chr2	233402851	233403150	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	14846	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
234190	chrX	12790971	12792150	+	0	NA	exon (NM_001039091, exon 1 of 7)	exon (NM_001039091, exon 1 of 7)	148	NM_002765	5634		NM_002765	ENSG00000101911	PRPS2	PRSII	phosphoribosyl pyrophosphate synthetase 2	protein-coding
215866	chr8	7526921	7527380	+	0	NA	Intergenic	Intergenic	-12477	NM_001282479	100131608		NM_001282479	ENSG00000255251	PRR23D1	PRR23D2	proline rich 23 domain containing 1	protein-coding
216334	chr8	13213551	13213650	+	0	NA	intron (NM_182643, intron 5 of 17)	intron (NM_182643, intron 5 of 17)	62921	NM_001316668	10395		NM_006094	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
177224	chr4	108531151	108531450	+	0	NA	Intergenic	Intergenic	-25933	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
3147	chr1	12519021	12519580	+	0	NA	Intergenic	Intergenic	12054	NR_003025	677885		NR_003025	ENSG00000239149	SNORA59A	ACA59	small nucleolar RNA, H/ACA box 59A	snoRNA
134696	chr2	144491151	144491830	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-28124	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
46180	chr11	123247021	123247530	+	0	NA	Intergenic	Intergenic	-52027	NM_024769	79827		NM_024769	ENSG00000166250	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR like membrane protein	protein-coding
221826	chr8	128063901	128064300	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	14948	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
120428	chr19	44051671	44052250	+	0	NA	promoter-TSS (NM_013361)	promoter-TSS (NM_013361)	-76	NM_013361	7766		NM_013361	ENSG00000178386	ZNF223	-	zinc finger protein 223	protein-coding
134940	chr2	151591301	151591730	+	0	NA	intron (NM_001164508, intron 95 of 181)	intron (NM_001164508, intron 95 of 181)	142961	NM_001271208	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
30643	chr10	80460651	80462250	+	0	NA	intron (NM_001351270, intron 1 of 9)	intron (NM_001351270, intron 1 of 9)	2165	NM_001351270	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
14854	chr1	146389151	146389500	+	0	NA	Intergenic	Intergenic	12518	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
126257	chr2	27098601	27099450	+	0	NA	TTS (NM_001166240)	TTS (NM_001166240)	12253	NM_000221	3795		NM_000221	ENSG00000138030	KHK	FRUCTU	ketohexokinase	protein-coding
237404	chrX	119603201	119603400	+	0	NA	intron (NM_017544, intron 2 of 3)	AluSz6|SINE|Alu	3124	NM_017544	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
210799	chr7	100861721	100862180	+	0	NA	intron (NM_001267812, intron 12 of 13)	intron (NM_001267812, intron 12 of 13)	-5437	NM_003302	7205		NM_003302	ENSG00000087077	TRIP6	OIP-1|OIP1|TRIP-6|TRIP6i2|ZRP-1	thyroid hormone receptor interactor 6	protein-coding
196150	chr6	42448371	42449350	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	3191	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
12078	chr1	99481471	99481700	+	0	NA	intron (NR_125951, intron 1 of 2)	intron (NR_125951, intron 1 of 2)	6219	NR_125951	101928270		NR_125951	ENSG00000224445	LINC01708	-	long intergenic non-protein coding RNA 1708	ncRNA
136493	chr2	177229551	177230200	+	0	NA	TTS (NM_001145412)	TTS (NM_001145412)	17081	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
18402	chr1	161421901	161422680	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-54414	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
109954	chr19	1377971	1378330	+	0	NA	non-coding (NR_024247, exon 15 of 15)	non-coding (NR_024247, exon 15 of 15)	-5757	NM_024407	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
188705	chr5	157307771	157308130	+	0	NA	intron (NM_014376, intron 9 of 30)	intron (NM_014376, intron 9 of 30)	37727	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
73231	chr15	41663671	41664050	+	0	NA	intron (NM_001164273, intron 1 of 23)	intron (NM_001164273, intron 1 of 23)	3448	NM_001080541	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
97864	chr17	45017121	45017380	+	0	NA	Intergenic	AluJr4|SINE|Alu	34382	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
169447	chr3	167379771	167380930	+	0	NA	promoter-TSS (NM_001199202)	promoter-TSS (NM_001199202)	-53	NM_001199201	79740		NM_024687	ENSG00000169064	ZBBX	-	zinc finger B-box domain containing	protein-coding
152181	chr22	20098051	20098150	+	0	NA	intron (NM_022720, intron 9 of 13)	AluSc|SINE|Alu	12042	NR_031706	100302197		NR_031706	ENSG00000284464	MIR1306	MIRN1306|hsa-mir-1306|mir-1306	microRNA 1306	ncRNA
197740	chr6	87160471	87160630	+	0	NA	intron (NM_015021, intron 1 of 7)	(TGTATA)n|Simple_repeat|Simple_repeat	4985	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
83016	chr16	22242371	22242530	+	0	NA	intron (NM_013302, intron 2 of 17).2	AluSx|SINE|Alu	36172	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
7011	chr1	31905471	31906230	+	0	NA	TTS (NM_001195101)	TTS (NM_001195101)	31968	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
167649	chr3	129625171	129625530	+	0	NA	Intergenic	Intergenic	-18674	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
239252	chrY	13367871	13368030	+	0	NA	intron (NR_047639, intron 8 of 25)	intron (NR_047639, intron 8 of 25)	-111227	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
85610	chr16	53744401	53744800	+	0	NA	intron (NM_001363897, intron 1 of 7)	intron (NM_001363897, intron 1 of 7)	40444	NM_001080432	79068		NM_001080432	ENSG00000140718	FTO	ALKBH9|BMIQ14|GDFD|IFEX9	FTO alpha-ketoglutarate dependent dioxygenase	protein-coding
142180	chr20	2873001	2875030	+	0	NA	intron (NM_001385311, intron 1 of 20)	intron (NM_001385311, intron 1 of 20)	534	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
5078	chr1	24684051	24684350	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	40621	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
27153	chr10	28339421	28339880	+	0	NA	Intergenic	Intergenic	-36586	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
140703	chr2	234308371	234309200	+	0	NA	Intergenic	Intergenic	145810	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
125548	chr2	15560591	15562200	+	0	NA	promoter-TSS (NM_015909)	promoter-TSS (NM_015909)	-61	NR_052013	51594		NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	NBAS subunit of NRZ tethering complex	protein-coding
19450	chr1	174801071	174801230	+	0	NA	intron (NM_001366454, intron 1 of 8)	intron (NM_001366454, intron 1 of 8)	1412	NM_001366454	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
139561	chr2	224929301	224929550	+	0	NA	intron (NM_001363762, intron 2 of 55)	intron (NM_001363762, intron 2 of 55)	17624	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
109604	chr19	933771	933930	+	0	NA	intron (NM_005224, intron 3 of 8)	intron (NM_005224, intron 3 of 8)	7815	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
200975	chr6	139344201	139344600	+	0	NA	Intergenic	L1PBa|LINE|L1	29813	NM_001168389	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
216280	chr8	12521571	12523310	+	0	NA	intron (NR_040091, intron 5 of 6)	HERVS71-int|LTR|ERV1	85427	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
45772	chr11	119265651	119266150	+	0	NA	intron (NM_005188, intron 2 of 15)	AluSx|SINE|Alu	47112	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
58897	chr13	19601801	19602400	+	0	NA	Intergenic	CpG	14982	NR_046988	100874136		NR_046988	ENSG00000225316	TPTE2-AS1	LINC00350	TPTE2 antisense RNA 1	ncRNA
108395	chr18	69888701	69889300	+	0	NA	intron (NM_006566, intron 4 of 6)	intron (NM_006566, intron 4 of 6)	58873	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
199965	chr6	127966601	127967000	+	0	NA	Intergenic	Intergenic	-48169	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
80080	chr16	1996801	1997000	+	0	NA	TTS (NM_178167)	TTS (NM_178167)	6930	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
57805	chr12	123121851	123121950	+	0	NA	intron (NM_001300801, intron 1 of 25)	AluJb|SINE|Alu	-16384	NM_001384660	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
213544	chr7	139098751	139099050	+	0	NA	intron (NM_020119, intron 1 of 12)	intron (NM_020119, intron 1 of 12)	10820	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
57491	chr12	122088851	122089450	+	0	NA	intron (NM_014938, intron 1 of 16)	AluJo|SINE|Alu	10394	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
44287	chr11	102312371	102312930	+	0	NA	Intergenic	L1ME2|LINE|L1	-4834	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
212795	chr7	130154071	130154650	+	0	NA	Intergenic	Intergenic	12629	NR_149034	100128325		NR_149033	ENSG00000229196	LINC03008	-	long intergenic non-protein coding RNA 3008	ncRNA
34219	chr10	129962121	129962430	+	0	NA	intron (NM_001375379, intron 3 of 15)	intron (NM_001375379, intron 3 of 15)	1999	NM_001005463	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
11514	chr1	90965221	90965480	+	0	NA	intron (NM_201269, intron 2 of 5)	MLT1B|LTR|ERVL-MaLR	56158	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
48752	chr12	10851221	10851850	+	0	NA	intron (NR_037918, intron 7 of 9)	intron (NR_037918, intron 7 of 9)	-2060	NM_007244	11272		NM_007244	ENSG00000111215	PRR4	LPRP|PROL4	proline rich 4	protein-coding
74429	chr15	59247401	59247680	+	0	NA	intron (NM_004998, intron 4 of 27)	MIRb|SINE|MIR	40697	NM_033195	92483		NM_033195	ENSG00000171989	LDHAL6B	LDH6B|LDHAL6|LDHL	lactate dehydrogenase A like 6B	protein-coding
62611	chr13	100538401	100538600	+	0	NA	intron (NM_001195087, intron 2 of 2)	L1MB2|LINE|L1	-4698	NM_033110	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
235269	chrX	41796671	41796830	+	0	NA	intron (NM_001126055, intron 2 of 24)	L2c|LINE|L2	72569	NM_080817	27197		NM_080817	ENSG00000171657	GPR82	-	G protein-coupled receptor 82	protein-coding
105267	chr17	82448001	82448200	+	0	NA	intron (NR_036516, intron 1 of 5)	intron (NR_036516, intron 1 of 5)	1626	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
72296	chr15	31014871	31015030	+	0	NA	intron (NM_001252024, intron 27 of 27).3	intron (NM_001252024, intron 27 of 27).3	-23322	NM_017762	54893		NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
6968	chr1	31781451	31782750	+	0	NA	Intergenic	Intergenic	-17760	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
237172	chrX	107677921	107678250	+	0	NA	Intergenic	Intergenic	38423	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
49700	chr12	31051751	31052150	+	0	NA	intron (NR_038927, intron 2 of 2)	L2b|LINE|L2	21897	NR_038927	100506660		NR_038927	ENSG00000245614	DDX11-AS1	CONCR|SCAT4	DDX11 antisense RNA 1	ncRNA
225082	chr9	33297451	33297830	+	0	NA	intron (NM_147134, intron 2 of 15)	MLT1E|LTR|ERVL-MaLR	7124	NM_147134	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
25262	chr10	6083471	6084480	+	0	NA	Intergenic	Intergenic	-5059	NM_032905	84991		NM_032905	ENSG00000134453	RBM17	SPF45	RNA binding motif protein 17	protein-coding
132977	chr2	111489371	111489980	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	5486	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
202979	chr6	161275901	161276100	+	0	NA	Intergenic	AluSx|SINE|Alu	-1939	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
172144	chr4	1196671	1196830	+	0	NA	non-coding (NR_024569, exon 4 of 4)	non-coding (NR_024569, exon 4 of 4)	12212	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
92199	chr17	7846171	7846350	+	0	NA	exon (NM_001080424, exon 6 of 22)	exon (NM_001080424, exon 6 of 22)	6343	NM_001080424	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
158505	chr3	3124901	3125100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1940	NR_159938	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
84980	chr16	31454071	31454600	+	0	NA	Intergenic	AluY|SINE|Alu	-3969	NM_001288767	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
90441	chr17	1364351	1364680	+	0	NA	intron (NR_024058, intron 3 of 6)	AluYm1|SINE|Alu	35707	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
201295	chr6	144335621	144336350	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	44248	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
69069	chr14	91998571	91999200	+	0	NA	intron (NM_001321851, intron 13 of 20)	intron (NM_001321851, intron 13 of 20)	41174	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
66628	chr14	63769971	63770730	+	0	NA	Intergenic	Intergenic	-42285	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
199851	chr6	127769801	127770000	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L1PA6|LINE|L1	85288	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
122727	chr19	50023301	50023700	+	0	NA	intron (NM_001308420, intron 1 of 12)	L2a|LINE|L2	1872	NM_001308420	51231		NM_016440	ENSG00000105053	VRK3	-	VRK serine/threonine kinase 3	protein-coding
148889	chr21	8459301	8459600	+	0	NA	Intergenic	AluSx1|SINE|Alu	18304	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
146391	chr20	49292171	49292330	+	0	NA	Intergenic	Intergenic	11567	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
71868	chr15	22361751	22361850	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	76226	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
189099	chr5	170310751	170311050	+	0	NA	intron (NR_147701, intron 1 of 1)	intron (NR_147701, intron 1 of 1)	1816	NR_147701	100128059		NR_147701	ENSG00000250274	LOC100128059	-	uncharacterized LOC100128059	ncRNA
50703	chr12	48925401	48926530	+	0	NA	promoter-TSS (NM_001143782)	promoter-TSS (NM_001143782)	-418	NM_001143782	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
128071	chr2	47865121	47865650	+	0	NA	intron (NM_001190274, intron 1 of 22)	MLT1J|LTR|ERVL-MaLR	23334	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
102072	chr17	74940021	74940480	+	0	NA	intron (NM_001272005, intron 1 of 6)	AluJo|SINE|Alu	4352	NM_001272005	347741		NM_178233	ENSG00000182938	OTOP3	-	otopetrin 3	protein-coding
95266	chr17	35494521	35495080	+	0	NA	intron (NM_001363830, intron 2 of 4)	intron (NM_001363830, intron 2 of 4)	-7061	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
116310	chr19	17789171	17789530	+	0	NA	TTS (NR_169219)	TTS (NR_169219)	-5788	NM_014256	10331		NM_014256	ENSG00000179913	B3GNT3	B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding
156390	chr22	41104621	41105850	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluSq2|SINE|Alu	12643	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
63282	chr13	113968921	113969380	+	0	NA	intron (NM_001365455, intron 2 of 6)	intron (NM_001365455, intron 2 of 6)	4926	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
184206	chr5	95927401	95928030	+	0	NA	intron (NM_012081, intron 2 of 11)	intron (NM_012081, intron 2 of 11)	34136	NM_012081	22936		NM_012081	ENSG00000118985	ELL2	MRCCAT1	elongation factor for RNA polymerase II 2	protein-coding
55332	chr12	103948751	103949550	+	0	NA	Intergenic	AluSx1|SINE|Alu	8065	NM_001135570	728568		NM_001135570	ENSG00000204954	UQCC6	BR|BRAWNIN|C12orf73	ubiquinol-cytochrome c reductase complex assembly factor 6	protein-coding
134668	chr2	144468571	144468730	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-50964	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
33751	chr10	122460321	122460580	+	0	NA	Intergenic	Intergenic	-1103	NM_002775	5654		NM_002775	ENSG00000166033	HTRA1	ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11	HtrA serine peptidase 1	protein-coding
189142	chr5	171314951	171315450	+	0	NA	Intergenic	CpG	5952	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
71161	chr14	105027001	105027380	+	0	NA	Intergenic	Intergenic	-6107	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
25591	chr10	8046301	8047280	+	0	NA	Intergenic	Intergenic	5701	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
21599	chr1	206554271	206554650	+	0	NA	intron (NM_182663, intron 2 of 5)	intron (NM_182663, intron 2 of 5)	-2704	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
141819	chr20	353371	353730	+	0	NA	exon (NM_024958, exon 4 of 4)	exon (NM_024958, exon 4 of 4)	5645	NM_001323685	80023		NM_024958	ENSG00000125841	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding
75169	chr15	64653521	64653980	+	0	NA	intron (NM_015042, intron 3 of 9)	intron (NM_015042, intron 3 of 9)	49531	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
205064	chr7	6613871	6614230	+	0	NA	Intergenic	Intergenic	-1560	NM_017560	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
125989	chr2	25293871	25296300	+	0	NA	intron (NR_135490, intron 3 of 23)	intron (NR_135490, intron 3 of 23)	33636	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
215898	chr8	8131401	8131600	+	0	NA	intron (NR_147089, intron 3 of 3)	HERVK11-int|LTR|ERVK	-42411	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
142320	chr20	3669201	3669700	+	0	NA	intron (NM_025220, intron 20 of 21)	intron (NM_025220, intron 20 of 21)	-6051	NM_145762	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
14770	chr1	146038901	146040550	+	0	NA	Intergenic	AluSp|SINE|Alu	12519	NR_104085	101954276		NR_104085	ENSG00000201558	RNVU1-6	RNU1-99|vU1.6	RNA, variant U1 small nuclear 6	snRNA
3697	chr1	16540571	16540730	+	0	NA	Intergenic	MER49|LTR|ERV1	-4998	NR_135764	100132147		NR_135764	ENSG00000233421	LINC01783	-	long intergenic non-protein coding RNA 1783	ncRNA
78455	chr15	92848951	92849680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-33528	NR_037600	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
100855	chr17	64183821	64184080	+	0	NA	intron (NM_001288732, intron 5 of 11)	L1MB8|LINE|L1	37611	NR_002995	677842		NR_002995	ENSG00000277887	SNORA50C	ACA62|SNORA76|SNORA76C	small nucleolar RNA, H/ACA box 50C	snoRNA
154541	chr22	36160151	36161030	+	0	NA	intron (NM_030644, intron 1 of 4)	MIRb|SINE|MIR	165	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
197086	chr6	56895351	56895880	+	0	NA	intron (NM_001374736, intron 3 of 103)	SVA_E|Retroposon|SVA	-43710	NM_001144770	667		NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBS3|EBSB2|HSAN6|MACF2	dystonin	protein-coding
187545	chr5	142772421	142773300	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	1633	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
165022	chr3	71397071	71397680	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-92604	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
9620	chr1	52409351	52409900	+	0	NA	intron (NM_032864, intron 3 of 9)	intron (NM_032864, intron 3 of 9)	5023	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
239462	chrY	56722501	56723300	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-231355	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
60803	chr13	45332651	45332750	+	0	NA	TTS (NM_001286273)	TTS (NM_001286273)	3747	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
177130	chr4	108109171	108109330	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	57547	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
62366	chr13	99221851	99222430	+	0	NA	intron (NR_026644, intron 1 of 8)	L2b|LINE|L2	21286	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
198500	chr6	106444801	106445400	+	0	NA	intron (NM_001371242, intron 1 of 21)	intron (NM_001371242, intron 1 of 21)	12148	NR_134603	105377924		NR_134603	ENSG00000282408	LOC105377924	-	uncharacterized LOC105377924	ncRNA
149961	chr21	36384971	36386400	+	0	NA	intron (NM_005441, intron 1 of 13)	CpG	293	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
131756	chr2	98464701	98465400	+	0	NA	intron (NM_001351429, intron 1 of 23)	MIRb|SINE|MIR	19040	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
47099	chr12	646771	647130	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	-3314	NR_160428	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
159960	chr3	17497021	17497100	+	0	NA	intron (NM_001349081, intron 2 of 21)	L2a|LINE|L2	202960	NM_001134381	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
127783	chr2	44190221	44190680	+	0	NA	intron (NM_177969, intron 1 of 4)	AluSx1|SINE|Alu	21575	NM_177968	5495		NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding
188020	chr5	149576001	149576450	+	0	NA	Intergenic	AluSx|SINE|Alu	-5273	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
73647	chr15	44689771	44690520	+	0	NA	Intergenic	AluSp|SINE|Alu	-13257	NM_001145112	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
110682	chr19	2274761	2275530	+	0	NA	3' UTR (NM_198532, exon 4 of 4)	3' UTR (NM_198532, exon 4 of 4)	5659	NM_004152	4946		NM_004152	ENSG00000104904	OAZ1	AZ1|AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
170215	chr3	184155101	184156430	+	0	NA	exon (NM_004423, exon 1 of 15)	exon (NM_004423, exon 1 of 15)	388	NM_004423	1857		NM_004423	ENSG00000161202	DVL3	DRS3	dishevelled segment polarity protein 3	protein-coding
209874	chr7	90928851	90929150	+	0	NA	intron (NM_012395, intron 7 of 13)	L1P2|LINE|L1	219184	NM_001287136	5218		NM_012395	ENSG00000058091	CDK14	PFTAIRE1|PFTK1	cyclin dependent kinase 14	protein-coding
95707	chr17	38510351	38511050	+	0	NA	exon (NM_001199417, exon 24 of 24).2	exon (NM_001199417, exon 24 of 24).2	82236	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
107662	chr18	49023571	49023930	+	0	NA	promoter-TSS (NR_148999)	promoter-TSS (NR_148999)	47	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
89966	chr16	89813571	89813930	+	0	NA	intron (NM_001018112, intron 3 of 10)	intron (NM_001018112, intron 3 of 10)	2897	NM_001286167	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
144540	chr20	35719401	35720000	+	0	NA	intron (NM_184234, intron 9 of 16)	intron (NM_184234, intron 9 of 16)	20295	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
181574	chr5	43193521	43194080	+	0	NA	intron (NR_072980, intron 1 of 3)	intron (NR_072980, intron 1 of 3)	948	NR_072980	167359		NM_153361	ENSG00000177453	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
85855	chr16	57023571	57024430	+	0	NA	intron (NM_001384955, intron 5 of 47)	intron (NM_001384955, intron 5 of 47)	34443	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
138848	chr2	216554101	216554830	+	0	NA	Intergenic	Intergenic	52473	NR_110392	101928232		NR_110392		LINC01280	-	long intergenic non-protein coding RNA 1280	ncRNA
234355	chrX	15565351	15565450	+	0	NA	intron (NM_001371415, intron 16 of 17)	intron (NM_001371415, intron 16 of 17)	35560	NM_001371415	59272		NM_021804	ENSG00000130234	ACE2	ACEH	angiotensin converting enzyme 2	protein-coding
13894	chr1	119613871	119614030	+	0	NA	Intergenic	Intergenic	-14659	NR_036540	644242		NR_036540	ENSG00000260941	LINC00622	-	long intergenic non-protein coding RNA 622	ncRNA
153288	chr22	24166021	24166280	+	0	NA	intron (NM_012295, intron 31 of 36)	intron (NM_012295, intron 31 of 36)	-15337	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
2408	chr1	9564971	9565530	+	0	NA	intron (NM_032315, intron 2 of 6)	AluY|SINE|Alu	-23661	NM_001010866	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
152321	chr22	20364501	20364900	+	0	NA	Intergenic	Intergenic	25787	NR_136572	101927859		NR_136572		FAM230G	-	family with sequence similarity 230 member G	ncRNA
126467	chr2	28362051	28362400	+	0	NA	Intergenic	Intergenic	-30633	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
24669	chr1	247115821	247116560	+	0	NA	Intergenic	Intergenic	-3773	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
193426	chr6	30463201	30464350	+	0	NA	Intergenic	Intergenic	-25734	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
23819	chr1	234478701	234479780	+	0	NA	promoter-TSS (NM_005646)	promoter-TSS (NM_005646)	-61	NM_005646	6894		NM_005646	ENSG00000059588	TARBP1	TRM3|TRMT3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
72688	chr15	38557871	38559180	+	0	NA	intron (NM_001128602, intron 2 of 15)	MER5A|DNA|hAT-Charlie	6289	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
149855	chr21	35138571	35139230	+	0	NA	Intergenic	Intergenic	-89598	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
196395	chr6	43282271	43282880	+	0	NA	intron (NM_032538, intron 13 of 14)	L2b|LINE|L2	-15685	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
48428	chr12	9684321	9684780	+	0	NA	intron (NM_013269, intron 2 of 4)	L1PA7|LINE|L1	14837	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
125394	chr2	11477851	11478480	+	0	NA	Intergenic	Intergenic	-11988	NM_001278278	1876		NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
178	chr1	661301	661580	+	0	NA	Intergenic	L1P4|LINE|L1	25214	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
208906	chr7	74025751	74026050	+	0	NA	Intergenic	Intergenic	-1889	NM_001278939	2006		NM_000501	ENSG00000049540	ELN	ADCL1|SVAS|WBS|WS	elastin	protein-coding
100961	chr17	64506001	64508400	+	0	NA	promoter-TSS (NM_001320596)	promoter-TSS (NM_001320596)	223	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
143008	chr20	20593771	20594130	+	0	NA	intron (NM_020343, intron 16 of 39)	intron (NM_020343, intron 16 of 39)	118694	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
145732	chr20	45061351	45061750	+	0	NA	intron (NM_001352385, intron 11 of 11)	Tigger7|DNA|TcMar-Tigger	39577	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
117981	chr19	33416221	33416780	+	0	NA	intron (NM_001166056, intron 7 of 12)	intron (NM_001166056, intron 7 of 12)	41976	NM_001252296	1054		NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT enhancer binding protein gamma	protein-coding
35612	chr11	1767151	1767630	+	0	NA	Intergenic	Intergenic	-3463	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
130554	chr2	85700221	85700480	+	0	NA	Intergenic	L1MC4|LINE|L1	5992	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
233131	chr9	137149221	137149680	+	0	NA	intron (NM_007327, intron 4 of 19)	(AGGCCC)n|Simple_repeat|Simple_repeat	10296	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
129413	chr2	69013801	69014350	+	0	NA	intron (NM_053034, intron 1 of 14)	(TTTTGT)n|Simple_repeat|Simple_repeat	896	NM_032208	84168		NM_018153	ENSG00000169604	ANTXR1	ATR|GAPO|TEM8	ANTXR cell adhesion molecule 1	protein-coding
1815	chr1	6237101	6237300	+	0	NA	intron (NR_103534, intron 2 of 4)	intron (NR_103534, intron 2 of 4)	960	NR_103534	148645		NM_153709		ICMT-DT	C1orf211|LINC00337|NCRNA00337	ICMT divergent transcript	ncRNA
114447	chr19	12702851	12703600	+	0	NA	TTS (NR_132756)	TTS (NR_132756)	446	NR_132756	106633804		NR_132756		SNORD135	ZL2	small nucleolar RNA, C/D box 135	snoRNA
213366	chr7	135831451	135832230	+	0	NA	Intergenic	L1MA9|LINE|L1	-83027	NM_001369697	389558		NM_205855	ENSG00000189320	FAM180A	UNQ1940	family with sequence similarity 180 member A	protein-coding
208656	chr7	73118171	73118330	+	0	NA	intron (NM_001382504, intron 2 of 9)	intron (NM_001382504, intron 2 of 9)	-32212	NM_001382554	643909		NM_001382554	ENSG00000262461	SPDYE9	SPDYE9P	speedy/RINGO cell cycle regulator family member E9	protein-coding
39843	chr11	62352371	62353130	+	0	NA	intron (NM_001083926, intron 2 of 6)	L1MDa|LINE|L1	15302	NM_001083926	80150		NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase and isoaspartyl peptidase 1	protein-coding
204178	chr7	2457771	2458430	+	0	NA	Intergenic	AluY|SINE|Alu	18283	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
161507	chr3	42572151	42573080	+	0	NA	intron (NM_001201572, intron 1 of 6)	L1MD2|LINE|L1	-9225	NM_016305	51188		NM_016305	ENSG00000008324	SS18L2	KIAA-iso	SS18 like 2	protein-coding
180776	chr5	32171701	32172080	+	0	NA	intron (NM_022130, intron 1 of 3)	AluSz|SINE|Alu	2429	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
108150	chr18	62571771	62572230	+	0	NA	intron (NM_017742, intron 12 of 13)	MIRb|SINE|MIR	48975	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
78937	chr15	101266221	101266480	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	11135	NM_018445	55829		NM_018445	ENSG00000131871	SELENOS	AD-015|ADO15|SBBI8|SELS|SEPS1|VIMP	selenoprotein S	protein-coding
67705	chr14	73289371	73289530	+	0	NA	intron (NM_003744, intron 7 of 11)	intron (NM_003744, intron 7 of 11)	-43449	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
127684	chr2	43199651	43200350	+	0	NA	Intergenic	Intergenic	26606	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
2098	chr1	7981121	7981780	+	0	NA	intron (NM_007262, intron 6 of 6)	MER58A|DNA|hAT-Charlie	19739	NM_007262	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
12693	chr1	109482271	109482430	+	0	NA	TTS (NM_001040709)	TTS (NM_001040709)	-1555	NM_153340	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
30082	chr10	73888951	73889250	+	0	NA	Intergenic	Intergenic	-14509	NM_172171	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
151673	chr22	17098151	17099000	+	0	NA	intron (NM_014339, intron 3 of 12)	intron (NM_014339, intron 3 of 12)	13575	NM_014339	23765		NM_014339	ENSG00000177663	IL17RA	CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R	interleukin 17 receptor A	protein-coding
92470	chr17	8739101	8739330	+	0	NA	intron (NM_144681, intron 4 of 6)	L2b|LINE|L2	5621	NM_144681	146849		NM_144681	ENSG00000161973	CCDC42	CCDC42A	coiled-coil domain containing 42	protein-coding
68797	chr14	91233851	91234150	+	0	NA	exon (NM_001348437, exon 3 of 3)	exon (NM_001348437, exon 3 of 3)	10704	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
161886	chr3	45946221	45946480	+	0	NA	intron (NM_006564, intron 1 of 1)	intron (NM_006564, intron 1 of 1)	2886	NM_006564	10663		NM_006564	ENSG00000172215	CXCR6	BONZO|CD186|CDw186|STRL33|TYMSTR	C-X-C motif chemokine receptor 6	protein-coding
126838	chr2	31233071	31233230	+	0	NA	intron (NM_001321270, intron 1 of 21)	intron (NM_001321270, intron 1 of 21)	807	NM_001321270	440854		NM_001145122	ENSG00000214711	CAPN14	-	calpain 14	protein-coding
1517	chr1	2898121	2898200	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-97292	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
34791	chr11	233271	233630	+	0	NA	exon (NM_012239, exon 2 of 7)	exon (NM_012239, exon 2 of 7)	2892	NM_001370314	23410		NM_012239	ENSG00000142082	SIRT3	SIR2L3	sirtuin 3	protein-coding
43109	chr11	75031971	75032330	+	0	NA	Intergenic	Intergenic	43217	NM_001367866	10825		NM_006656	ENSG00000162139	NEU3	SIAL3	neuraminidase 3	protein-coding
224536	chr9	19229421	19231780	+	0	NA	promoter-TSS (NM_017925)	promoter-TSS (NM_017925)	-93	NM_001330640	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
189917	chr5	177367971	177368330	+	0	NA	intron (NM_006480, intron 7 of 14)	intron (NM_006480, intron 7 of 14)	10226	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
96283	chr17	39922401	39923450	+	0	NA	intron (NM_001320801, intron 5 of 5)	intron (NM_001320801, intron 5 of 5)	3921	NM_001320801	94103		NM_016471	ENSG00000172057	ORMDL3	-	ORMDL sphingolipid biosynthesis regulator 3	protein-coding
159648	chr3	15319401	15319800	+	0	NA	intron (NM_001018009, intron 2 of 8)	MLT1H1|LTR|ERVL-MaLR	12986	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
55318	chr12	103925221	103925570	+	0	NA	intron (NR_027249, intron 1 of 15)	MLT1F|LTR|ERVL-MaLR	4816	NR_027249	253724		NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
112470	chr19	6395051	6396250	+	0	NA	intron (NM_001321601, intron 1 of 3)	AluSz|SINE|Alu	1881	NM_001321601	390877		NM_001321601	ENSG00000293438	LOC390877	-	adenylate kinase isoenzyme 1-like	pseudo
47127	chr12	722451	722550	+	0	NA	Intergenic	Intergenic	-30079	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
224811	chr9	25678201	25678400	+	0	NA	exon (NM_001004125, exon 1 of 1)	exon (NM_001004125, exon 1 of 1)	144	NM_001004125	286319		NM_001004125	ENSG00000198680	TUSC1	CCDC89B|TSG-9|TSG9	tumor suppressor candidate 1	protein-coding
16359	chr1	154336251	154336780	+	0	NA	intron (NM_001367934, intron 10 of 26)	AluSx1|SINE|Alu	7717	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
150576	chr21	43170521	43171150	+	0	NA	intron (NM_000394, intron 2 of 2).2	intron (NM_000394, intron 2 of 2).2	599	NM_001363766	1409		NM_000394	ENSG00000160202	CRYAA	CRYA1|CTRCT9|HSPB4	crystallin alpha A	protein-coding
97486	chr17	43832601	43833880	+	0	NA	promoter-TSS (NR_148345)	promoter-TSS (NR_148345)	-46	NR_003562	4356		NM_001932	ENSG00000161647	MPP3	DLG3	MAGUK p55 scaffold protein 3	protein-coding
6088	chr1	27252621	27253130	+	0	NA	intron (NM_015023, intron 1 of 15)	intron (NM_015023, intron 1 of 15)	18243	NM_015023	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
99058	chr17	48927971	48928330	+	0	NA	3' UTR (NM_023079, exon 7 of 7)	3' UTR (NM_023079, exon 7 of 7)	16692	NR_133679	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
63919	chr14	21980451	21980550	+	0	NA	Intergenic	Intergenic	-309483	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
213398	chr7	136179421	136179880	+	0	NA	Intergenic	Intergenic	-202291	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
168816	chr3	152222201	152222900	+	0	NA	Intergenic	L1MEf|LINE|L1	-17121	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
192633	chr6	26131851	26131950	+	0	NA	Intergenic	AluJb|SINE|Alu	7728	NM_003512	8334		NM_003512	ENSG00000180573	H2AC6	H2A/l|H2AFL|HIST1H2AC|dJ221C16.4	H2A clustered histone 6	protein-coding
55582	chr12	106345801	106346130	+	0	NA	intron (NM_152772, intron 9 of 9)	MLT1H|LTR|ERVL-MaLR	-11783	NM_018082	55703		NM_018082	ENSG00000013503	POLR3B	C128|CMT1I|HLD8|INMAP|RPC2	RNA polymerase III subunit B	protein-coding
4057	chr1	19058171	19058330	+	0	NA	Intergenic	Intergenic	-101574	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
96076	chr17	39602771	39603180	+	0	NA	TTS (NM_006160)	TTS (NM_006160)	4945	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
168531	chr3	144109951	144110250	+	0	NA	Intergenic	MER70C|LTR|ERVL	137019	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
24003	chr1	235248501	235248700	+	0	NA	intron (NM_016374, intron 6 of 23)	intron (NM_016374, intron 6 of 23)	-58484	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
142577	chr20	5504421	5504680	+	0	NA	promoter-TSS (NR_015406)	promoter-TSS (NR_015406)	46	NR_015406	149837		NR_015406	ENSG00000205181	LINC00654	-	long intergenic non-protein coding RNA 654	ncRNA
34982	chr11	511501	512430	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4723	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
232857	chr9	136794421	136794680	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-1788	NM_001039374	84960		NM_032874	ENSG00000213213	CCDC183	KIAA1984|PARF|bA216L13.7	coiled-coil domain containing 183	protein-coding
186963	chr5	139665901	139666180	+	0	NA	intron (NM_001317203, intron 2 of 3)	MIR1_Amn|SINE|MIR	6485	NM_001317206	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
102859	chr17	76495471	76496830	+	0	NA	intron (NR_164786, intron 1 of 19)	MIRb|SINE|MIR	5273	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
228065	chr9	96137421	96137880	+	0	NA	Intergenic	Intergenic	-21239	NR_132344	158434		NM_001256408	ENSG00000275465	LOC158434	-	uncharacterized LOC158434	ncRNA
203635	chr7	966071	966930	+	0	NA	3' UTR (NM_001031617, exon 3 of 3)	3' UTR (NM_001031617, exon 3 of 3)	9049	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
27482	chr10	32053171	32053650	+	0	NA	intron (NM_004521, intron 1 of 25)	intron (NM_004521, intron 1 of 25)	3015	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
187827	chr5	146799151	146799650	+	0	NA	intron (NM_001271899, intron 2 of 9)	intron (NM_001271899, intron 2 of 9)	79357	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
88875	chr16	87700271	87701800	+	0	NA	Intergenic	Intergenic	64951	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
151774	chr22	18075271	18075430	+	0	NA	Intergenic	AluJb|SINE|Alu	-2640	NM_017929	55670		NM_017929	ENSG00000215193	PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
190864	chr6	2104271	2104500	+	0	NA	intron (NM_001253846, intron 4 of 10)	intron (NM_001253846, intron 4 of 10)	71606	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
174584	chr4	40245501	40246050	+	0	NA	3' UTR (NM_004310, exon 3 of 3)	3' UTR (NM_004310, exon 3 of 3)	48744	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
184741	chr5	109708571	109708730	+	0	NA	intron (NM_002372, intron 1 of 21)	MLT2B5|LTR|ERVL	19284	NM_002372	4124		NM_002372	ENSG00000112893	MAN2A1	AMan II|GOLIM7|MANA2|MANII	mannosidase alpha class 2A member 1	protein-coding
165944	chr3	107600701	107601200	+	0	NA	intron (NM_020235, intron 2 of 16)	Tigger1|DNA|TcMar-Tigger	77988	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
219076	chr8	65829251	65829350	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	12764	NM_001242318	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
32523	chr10	102853821	102854900	+	0	NA	exon (NM_001136200, exon 1 of 5)	exon (NM_001136200, exon 1 of 5)	101	NM_001136200	119032		NM_144591	ENSG00000166275	BORCS7	C10orf32	BLOC-1 related complex subunit 7	protein-coding
75475	chr15	65981921	65982580	+	0	NA	exon (NM_001385028, exon 6 of 26)	exon (NM_001385028, exon 6 of 26)	-57983	NR_036196	100422905		NR_036196	ENSG00000263512	MIR4311	-	microRNA 4311	ncRNA
105457	chr17	83025751	83027010	+	0	NA	intron (NR_135465, intron 4 of 13)	L1ME3F|LINE|L1	-19383	NM_001320743	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
235459	chrX	46571921	46573000	+	0	NA	Intergenic	L2a|LINE|L2	-1305	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
167236	chr3	128486021	128486280	+	0	NA	exon (NM_001145662, exon 3 of 6)	exon (NM_001145662, exon 3 of 6)	1771	NM_001145662	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
172219	chr4	1315371	1316430	+	0	NA	intron (NR_123716, intron 3 of 6)	intron (NR_123716, intron 3 of 6)	6109	NM_001297433	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
144273	chr20	34567471	34567830	+	0	NA	intron (NM_080476, intron 11 of 11)	intron (NM_080476, intron 11 of 11)	8932	NM_032514	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
156155	chr22	40194671	40195080	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	16950	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
192734	chr6	26373901	26374300	+	0	NA	intron (NM_001197249, intron 7 of 9)	intron (NM_001197249, intron 7 of 9)	5922	NM_001197246	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
78306	chr15	90922971	90923550	+	0	NA	TTS (NR_135502)	TTS (NR_135502)	-6920	NM_001039675	55898		NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|OOHE|SMAP-1|SMAP1|UNC-45A	unc-45 myosin chaperone A	protein-coding
26072	chr10	13098071	13098380	+	0	NA	intron (NM_001282658, intron 3 of 6)	intron (NM_001282658, intron 3 of 6)	1764	NM_001282658	83643		NM_031455	ENSG00000151468	CCDC3	-	coiled-coil domain containing 3	protein-coding
75323	chr15	65307901	65308830	+	0	NA	Intergenic	AluJr|SINE|Alu	3688	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
20903	chr1	202164561	202166350	+	0	NA	Intergenic	Intergenic	-2596	NR_002930	148713		NR_002930	ENSG00000293457	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase receptor type V, pseudogene	pseudo
157745	chr22	46623101	46623700	+	0	NA	intron (NM_015124, intron 1 of 18)	AluYf1|SINE|Alu	3014	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
38977	chr11	47575651	47576550	+	0	NA	intron (NM_016506, intron 2 of 3)	AluJb|SINE|Alu	2671	NM_001318725	55709		NM_016506	ENSG00000123444	KBTBD4	BKLHD4|HSPC252	kelch repeat and BTB domain containing 4	protein-coding
90914	chr17	2539021	2539480	+	0	NA	Intergenic	Intergenic	-27362	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
129295	chr2	68487801	68488250	+	0	NA	intron (NM_173545, intron 1 of 9)	intron (NM_173545, intron 1 of 9)	20440	NM_173545	200558		NM_173545	ENSG00000169621	APLF	APFL|C2orf13|PALF|Xip1|ZCCHH1	aprataxin and PNKP like factor	protein-coding
61946	chr13	78658001	78659310	+	0	NA	intron (NM_024546, intron 1 of 5)	intron (NM_024546, intron 1 of 5)	500	NM_024546	79596		NM_024546	ENSG00000152193	OBI1	C13orf7|RNF219	ORC ubiquitin ligase 1	protein-coding
23443	chr1	228452171	228452900	+	0	NA	Intergenic	Intergenic	5338	NM_033445	92815		NM_033445	ENSG00000181218	H2AC25	H2AW|HIST3H2A	H2A clustered histone 25	protein-coding
92609	chr17	9965671	9966200	+	0	NA	intron (NM_201432, intron 4 of 13)	intron (NM_201432, intron 4 of 13)	-6440	NM_003644	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
187321	chr5	141634921	141635350	+	0	NA	intron (NR_149164, intron 2 of 13)	intron (NR_149164, intron 2 of 13)	1714	NR_149167	8841		NM_003883	ENSG00000171720	HDAC3	HD3|KDAC3|RPD3|RPD3-2	histone deacetylase 3	protein-coding
180749	chr5	32076751	32076930	+	0	NA	intron (NM_178140, intron 18 of 24)	intron (NM_178140, intron 18 of 24)	97479	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
64971	chr14	36661421	36662100	+	0	NA	promoter-TSS (NM_001372076)	promoter-TSS (NM_001372076)	-100	NM_001372076	5083		NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
42991	chr11	73961451	73961750	+	0	NA	intron (NM_153614, intron 3 of 7)	LTR67B|LTR|ERVL	10574	NM_001377263	374407		NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
154325	chr22	32136571	32136730	+	0	NA	Intergenic	Intergenic	14673	NR_040114	23782		NR_040114	ENSG00000290475	AP1B1P1	ADTB1L1|dJ127L4.2	AP1B1 pseudogene 1	pseudo
103261	chr17	77664771	77665130	+	0	NA	Intergenic	L2c|LINE|L2	63609	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
232351	chr9	135505851	135505950	+	0	NA	non-coding (NR_121579, exon 1 of 3)	non-coding (NR_121579, exon 1 of 3)	547	NR_121579	101928525		NR_121579	ENSG00000226706	LOC101928525	-	uncharacterized LOC101928525	ncRNA
64302	chr14	23561921	23562180	+	0	NA	exon (NM_003917, exon 17 of 22)	exon (NM_003917, exon 17 of 22)	953	NR_110555	102724814		NR_110555	ENSG00000258727	AP1G2-AS1	-	AP1G2 antisense RNA 1	ncRNA
203552	chr7	888751	889330	+	0	NA	intron (NM_015949, intron 4 of 8)	intron (NM_015949, intron 4 of 8)	12486	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
147777	chr20	62551621	62551950	+	0	NA	promoter-TSS (NR_033263)	promoter-TSS (NR_033263)	-224	NR_033263	253868		NM_152757		CRMA	C20orf166-AS1|C20orf200|CARMA|MIR1-1HG-AS1|NCRNA00335	cardiomyocyte maturation associated lncRNA	ncRNA
8284	chr1	40003151	40003450	+	0	NA	Intergenic	Intergenic	-36940	NM_001350479	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
98207	chr17	46134121	46134580	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSq|SINE|Alu	58432	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
162098	chr3	46900721	46901200	+	0	NA	intron (NM_001184744, intron 9 of 14)	intron (NM_001184744, intron 9 of 14)	18711	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
79229	chr16	375421	375750	+	0	NA	intron (NM_021259, intron 6 of 12)	AluY|SINE|Alu	-5047	NM_006428	10573		NM_006428	ENSG00000086504	MRPL28	MAAT1|bL28m|p15	mitochondrial ribosomal protein L28	protein-coding
152545	chr22	20996521	20997130	+	0	NA	intron (NM_006767, intron 19 of 20)	intron (NM_006767, intron 19 of 20)	-5097	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
197534	chr6	78075521	78075600	+	0	NA	Intergenic	MIRb|SINE|MIR	422521	NM_001322247	101928601		NM_001282136	ENSG00000269964	MEI4	-	meiotic double-stranded break formation protein 4	protein-coding
226208	chr9	65396821	65397080	+	0	NA	Intergenic	Intergenic	-111741	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
113714	chr19	10451301	10451500	+	0	NA	intron (NM_001111307, intron 6 of 14)	intron (NM_001111307, intron 6 of 14)	-1532	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
153794	chr22	29604851	29605380	+	0	NA	intron (NM_181830, intron 1 of 14)	AluJb|SINE|Alu	1482	NM_181829	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
178104	chr4	140637901	140638150	+	0	NA	intron (NM_015130, intron 15 of 20)	intron (NM_015130, intron 15 of 20)	5055	NR_077215	644962		NR_077215		TNRC18P1	-	trinucleotide repeat containing 18 pseudogene 1	pseudo
143464	chr20	30899951	30900130	+	0	NA	Intergenic	Intergenic	-357624	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
184412	chr5	98917701	98918130	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-10647	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
51034	chr12	49761201	49761880	+	0	NA	intron (NM_001098576, intron 8 of 9)	intron (NM_001098576, intron 8 of 9)	19731	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
49487	chr12	25245651	25245950	+	0	NA	intron (NM_001369786, intron 1 of 5)	intron (NM_001369786, intron 1 of 5)	5129	NM_033360	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
39419	chr11	60865221	60865680	+	0	NA	Intergenic	L1PA13|LINE|L1	-2092	NM_207341	22917		NM_207341	ENSG00000149506	ZP1	HEL163|OOMD|OOMD1|OZEMA1|ZPB1	zona pellucida glycoprotein 1	protein-coding
99126	chr17	49227051	49228050	+	0	NA	intron (NM_001143804, intron 1 of 2)	intron (NM_001143804, intron 1 of 2)	3216	NM_001143804	162466		NM_178500	ENSG00000173868	PHOSPHO1	-	phosphoethanolamine/phosphocholine phosphatase 1	protein-coding
94837	chr17	31483201	31483600	+	0	NA	intron (NM_032932, intron 3 of 14)	MIR3|SINE|MIR	-4708	NM_001303542	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
119024	chr19	38914971	38915330	+	0	NA	TTS (NM_017827).2	TTS (NM_017827).2	-2992	NM_001243212	643669		NM_001243212	ENSG00000262484	CCER2	-	coiled-coil glutamate rich protein 2	protein-coding
94014	chr17	26619571	26620050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	469431	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
42782	chr11	72762571	72763130	+	0	NA	intron (NM_006645, intron 2 of 6)	L2c|LINE|L2	-10461	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
87616	chr16	74377701	74378300	+	0	NA	promoter-TSS (NM_001306094)	promoter-TSS (NM_001306094)	48	NM_001306094	440348		NM_001018059	ENSG00000196436	NPIPB15	A-761H5.4|NPIPL2	nuclear pore complex interacting protein family member B15	protein-coding
219343	chr8	70233571	70233730	+	0	NA	intron (NM_001321713, intron 2 of 21)	L2c|LINE|L2	-162398	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
44659	chr11	110429151	110430710	+	0	NA	promoter-TSS (NM_004109)	promoter-TSS (NM_004109)	-18	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
60071	chr13	33678951	33679560	+	0	NA	Intergenic	Intergenic	-2461	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
170493	chr3	186112651	186112950	+	0	NA	Intergenic	Intergenic	-3711	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
224317	chr9	6703671	6704830	+	0	NA	Intergenic	CpG	-16613	NM_001146696	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
64748	chr14	34552371	34553080	+	0	NA	Intergenic	Intergenic	3664	NR_004421	6060		NR_004421	ENSG00000207389	RNU1-4	HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F	RNA, U1 small nuclear 4	snRNA
66425	chr14	61523751	61523850	+	0	NA	intron (NM_006255, intron 10 of 13)	L1MC5|LINE|L1	46394	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
51817	chr12	53440121	53440380	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1399	NM_001005354	54458		NM_018457	ENSG00000205352	PRR13	TXR1	proline rich 13	protein-coding
211378	chr7	105008251	105008930	+	0	NA	Intergenic	AluSx1|SINE|Alu	5551	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
66373	chr14	61477921	61479800	+	0	NA	intron (NM_006255, intron 9 of 13)	AluJo|SINE|Alu	91334	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
218937	chr8	60916201	60917000	+	0	NA	Intergenic	L2c|LINE|L2	-5802	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
83575	chr16	28141801	28143830	+	0	NA	intron (NM_001270940, intron 10 of 24)	AluJo|SINE|Alu	69150	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
219227	chr8	66776771	66777130	+	0	NA	intron (NM_170709, intron 1 of 15)	intron (NM_170709, intron 1 of 15)	1745	NM_170709	23678		NM_013257	ENSG00000104205	SGK3	CISK|SGK2|SGKL	serum/glucocorticoid regulated kinase family member 3	protein-coding
56630	chr12	118347071	118347430	+	0	NA	intron (NM_001346487, intron 1 of 20)	AluJb|SINE|Alu	12455	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
173915	chr4	25239621	25240080	+	0	NA	intron (NM_018323, intron 1 of 9)	HERV9NC-int|LTR|ERV1	5817	NM_018323	55300		NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
206621	chr7	35856651	35856950	+	0	NA	intron (NM_001788, intron 2 of 12)	intron (NM_001788, intron 2 of 12)	55581	NM_001375299	989		NM_001788	ENSG00000122545	SEPTIN7	CDC10|CDC3|NBLA02942|SEPT7|SEPT7A|Septin-7	septin 7	protein-coding
205240	chr7	8018751	8019500	+	0	NA	intron (NM_138426, intron 2 of 7)	intron (NM_138426, intron 2 of 7)	50329	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
16157	chr1	153726471	153726730	+	0	NA	Intergenic	AluY|SINE|Alu	-1450	NM_001324475	65123		NM_023015	ENSG00000143624	INTS3	C1orf193|C1orf60|INT3|SOSS-A|SOSSA	integrator complex subunit 3	protein-coding
47329	chr12	1800501	1801400	+	0	NA	intron (NM_172364, intron 31 of 37)	intron (NM_172364, intron 31 of 37)	-19317	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
7693	chr1	35933121	35933480	+	0	NA	intron (NM_177422, intron 1 of 16)	intron (NM_177422, intron 1 of 16)	2195	NM_177422	192669		NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
15088	chr1	148518271	148518950	+	0	NA	Intergenic	Intergenic	-35308	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
153693	chr22	29245101	29245850	+	0	NA	intron (NM_133455, intron 13 of 14)	intron (NM_133455, intron 13 of 14)	22506	NR_138044	25807		NM_012265	ENSG00000100263	RHBDD3	C22orf3|HS984G1A|PTAG	rhomboid domain containing 3	protein-coding
150988	chr21	44344351	44344450	+	0	NA	Intergenic	AluY|SINE|Alu	-5010	NM_001271440	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
220819	chr8	102810201	102811830	+	0	NA	non-coding (NR_149020, exon 2 of 2)	non-coding (NR_149020, exon 2 of 2)	4193	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
29122	chr10	68408601	68409100	+	0	NA	Intergenic	Intergenic	-1556	NM_001278225	55680		NM_017987	ENSG00000204130	RUFY2	RABIP4R|ZFYVE13	RUN and FYVE domain containing 2	protein-coding
113613	chr19	10304551	10304850	+	0	NA	TTS (NM_001103167)	TTS (NM_001103167)	4857	NM_001103167	100125288		NM_001103167	ENSG00000220201	ZGLP1	GATAD3|GLP-1|GLP1	zinc finger GATA like protein 1	protein-coding
43307	chr11	76212701	76213230	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-6463	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
58962	chr13	19847021	19847280	+	0	NA	intron (NM_001142684, intron 4 of 7)	AluSz6|SINE|Alu	16486	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
54557	chr12	92182001	92182200	+	0	NA	intron (NR_135036, intron 2 of 2)	Tigger1|DNA|TcMar-Tigger	36015	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
8952	chr1	44318251	44318850	+	0	NA	intron (NM_001301698, intron 3 of 7)	intron (NM_001301698, intron 3 of 7)	36707	NM_001301698	79033		NM_024066	ENSG00000117419	ERI3	PINT1|PRNPIP	ERI1 exoribonuclease family member 3	protein-coding
6679	chr1	29140471	29140830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-16747	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
10618	chr1	68058151	68058350	+	0	NA	intron (NR_040077, intron 2 of 9)	LTR13|LTR|ERVK	-6619	NM_004675	9077		NM_004675	ENSG00000162595	DIRAS3	ARHI|NOEY2	DIRAS family GTPase 3	protein-coding
164117	chr3	56692221	56693500	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-9595	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
211901	chr7	112205431	112207530	+	0	NA	promoter-TSS (NM_021994)	promoter-TSS (NM_021994)	-81	NM_014705	9732		NM_014705	ENSG00000128512	DOCK4	-	dedicator of cytokinesis 4	protein-coding
178565	chr4	151115421	151116630	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	12198	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
219049	chr8	65787471	65787630	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	1507	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
221954	chr8	129942451	129942800	+	0	NA	intron (NM_001353279, intron 2 of 13)	intron (NM_001353279, intron 2 of 13)	-2814	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
69193	chr14	92664351	92664650	+	0	NA	intron (NM_024832, intron 7 of 9)	AluY|SINE|Alu	84127	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
35435	chr11	1440001	1441130	+	0	NA	intron (NM_001256630, intron 3 of 19)	(CCACC)n|Simple_repeat|Simple_repeat	29413	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
91842	chr17	7206401	7206880	+	0	NA	intron (NR_135527, intron 4 of 20)	intron (NR_135527, intron 4 of 20)	631	NM_001369566	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
48646	chr12	10408821	10409830	+	0	NA	intron (NM_001199805, intron 1 of 12)	intron (NM_001199805, intron 1 of 12)	432	NM_013431	8302		NM_013431	ENSG00000183542	KLRC4	NKG2-F|NKG2F	killer cell lectin like receptor C4	protein-coding
135020	chr2	156107821	156107900	+	0	NA	intron (NR_110250, intron 1 of 3)	L1ME1|LINE|L1	147071	NR_110250	101929378		NR_110249	ENSG00000226383	LINC01876	uc.83	long intergenic non-protein coding RNA 1876	ncRNA
50245	chr12	46246221	46247080	+	0	NA	intron (NM_001077484, intron 1 of 16)	L1PA6|LINE|L1	19866	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
222815	chr8	142470571	142470930	+	0	NA	intron (NM_001702, intron 2 of 30)	intron (NM_001702, intron 2 of 30)	21101	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
65297	chr14	50062501	50063250	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	42168	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
140826	chr2	236550751	236551380	+	0	NA	Intergenic	Intergenic	-18760	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
234967	chrX	39261421	39261730	+	0	NA	Intergenic	Intergenic	65787	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
224084	chr9	4334371	4334730	+	0	NA	Intergenic	Intergenic	-34482	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
75093	chr15	64436621	64436880	+	0	NA	intron (NR_135855, intron 10 of 11)	intron (NR_135855, intron 10 of 11)	-23828	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
205573	chr7	21354571	21354730	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-73433	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
104969	chr17	81974421	81975330	+	0	NA	Intergenic	AluY|SINE|Alu	-2754	NM_001330528	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
221604	chr8	125527521	125528000	+	0	NA	Intergenic	MIRb|SINE|MIR	95551	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
185848	chr5	132483721	132484650	+	0	NA	intron (NM_001354925, intron 7 of 7)	intron (NM_001354925, intron 7 of 7)	6588	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
211651	chr7	106262351	106262650	+	0	NA	intron (NM_005746, intron 7 of 10)	intron (NM_005746, intron 7 of 10)	22483	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
107916	chr18	57592651	57593350	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6298	NM_001371094	2235		NM_000140	ENSG00000066926	FECH	EPP|EPP1|FCE	ferrochelatase	protein-coding
18594	chr1	165596901	165597280	+	0	NA	Intergenic	AluJb|SINE|Alu	-14935	NR_026744	400794		NR_026744	ENSG00000237463	LRRC52-AS1	-	LRRC52 antisense RNA 1	ncRNA
219192	chr8	66607271	66608430	+	0	NA	intron (NM_001294282, intron 1 of 14)	intron (NM_001294282, intron 1 of 14)	5368	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
97260	chr17	43005051	43005150	+	0	NA	Intergenic	Intergenic	-1684	NM_001330230	3430		NM_005533	ENSG00000068079	IFI35	IFP35	interferon induced protein 35	protein-coding
225718	chr9	36772521	36772850	+	0	NA	Intergenic	Intergenic	50914	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA
24178	chr1	235882401	235882800	+	0	NA	intron (NM_001301365, intron 1 of 52)	L2c|LINE|L2	1108	NM_001301365	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
183594	chr5	80191701	80193530	+	0	NA	intron (NM_001174072, intron 2 of 11)	intron (NM_001174072, intron 2 of 11)	63433	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
19832	chr1	182846201	182846400	+	0	NA	intron (NM_001357, intron 3 of 27)	AluSp|SINE|Alu	-6709	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
155429	chr22	38453551	38453650	+	0	NA	intron (NM_152868, intron 1 of 1)	intron (NM_152868, intron 1 of 1)	1599	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
2934	chr1	11802701	11803850	+	0	NA	intron (NM_005957, intron 1 of 11)	intron (NM_005957, intron 1 of 11)	402	NM_001330358	4524		NM_005957	ENSG00000177000	MTHFR	-	methylenetetrahydrofolate reductase	protein-coding
119942	chr19	41868101	41868880	+	0	NA	intron (NM_001321485, intron 3 of 5)	intron (NM_001321485, intron 3 of 5)	-1137	NR_106855	102465478		NR_106855	ENSG00000276926	MIR6797	hsa-mir-6797	microRNA 6797	ncRNA
28519	chr10	50399521	50400080	+	0	NA	intron (NM_147156, intron 6 of 10)	AluY|SINE|Alu	-148284	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
182745	chr5	68277221	68277480	+	0	NA	intron (NM_181523, intron 4 of 15)	intron (NM_181523, intron 4 of 15)	-11169	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
86312	chr16	59230071	59230230	+	0	NA	Intergenic	L1PA5|LINE|L1	-495834	NM_002080	2806		NM_002080	ENSG00000125166	GOT2	DEE82|KAT4|KATIV|KYAT4|mitAAT	glutamic-oxaloacetic transaminase 2	protein-coding
236125	chrX	57593751	57593850	+	0	NA	exon (NM_007157, exon 1 of 1)	exon (NM_007157, exon 1 of 1)	1789	NM_007157	158586		NM_007157	ENSG00000198455	ZXDB	ZNF905|dJ83L6.1	zinc finger X-linked duplicated B	protein-coding
178472	chr4	148415651	148415750	+	0	NA	intron (NR_148974, intron 2 of 6)	intron (NR_148974, intron 2 of 6)	26714	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
194180	chr6	32116751	32118080	+	0	NA	intron (NM_001136153, intron 13 of 17).4	intron (NM_001136153, intron 13 of 17).4	-8077	NM_001365276	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
162066	chr3	46861321	46861580	+	0	NA	intron (NM_000258, intron 1 of 6)	intron (NM_000258, intron 1 of 6)	1994	NM_000258	4634		NM_000258	ENSG00000160808	MYL3	CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl	myosin light chain 3	protein-coding
124287	chr19	57829821	57830500	+	0	NA	promoter-TSS (NM_001376223)	promoter-TSS (NM_001376223)	-139	NM_001376223	100293516		NM_001204818	ENSG00000269343	ZNF587B	-	zinc finger protein 587B	protein-coding
174036	chr4	26865001	26865430	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	4374	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
38624	chr11	46343851	46344150	+	0	NA	intron (NM_201532, intron 1 of 30)	AluSx1|SINE|Alu	-1267	NM_201533	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
14250	chr1	143248451	143248950	+	0	NA	Intergenic	Intergenic	173892	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
118278	chr19	35278501	35278700	+	0	NA	intron (NM_001321150, intron 5 of 7)	intron (NM_001321150, intron 5 of 7)	-3928	NM_021175	57817		NM_021175	ENSG00000105697	HAMP	HEPC|HFE2B|LEAP1|PLTR	hepcidin antimicrobial peptide	protein-coding
150549	chr21	43079001	43079400	+	0	NA	Intergenic	AluSq|SINE|Alu	-2257	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
97295	chr17	43177251	43178080	+	0	NA	intron (NM_001291572, intron 2 of 17)	L1ME3G|LINE|L1	6451	NM_001291572	4077		NM_005899	ENSG00000188554	NBR1	1A1-3B|IAI3B|M17S2|MIG19	NBR1 autophagy cargo receptor	protein-coding
221703	chr8	127172401	127173000	+	0	NA	Intergenic	Intergenic	24927	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
204062	chr7	1990951	1991050	+	0	NA	intron (NM_001304524, intron 12 of 16)	intron (NM_001304524, intron 12 of 16)	-50429	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
21846	chr1	207362401	207362600	+	0	NA	Intergenic	MIR|SINE|MIR	40822	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
152827	chr22	21942421	21943280	+	0	NA	non-coding (NR_147620, exon 2 of 2)	non-coding (NR_147620, exon 2 of 2)	4613	NR_147620	100286925		NR_147620		PPM1F-AS1	-	PPM1F antisense RNA 1	ncRNA
214250	chr7	148911451	148912050	+	0	NA	Intergenic	Intergenic	-27459	NM_001203247	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
35957	chr11	2730751	2730900	+	0	NA	intron (NM_181798, intron 11 of 15)	intron (NM_181798, intron 11 of 15)	-30827	NR_002728	10984		NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1	ncRNA
24871	chr10	900451	900780	+	0	NA	intron (NM_001351277, intron 1 of 17)	AluSx4|SINE|Alu	31090	NM_001351277	23185		NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	La ribonucleoprotein 4B	protein-coding
86588	chr16	67245971	67246800	+	0	NA	intron (NM_001318202, intron 1 of 23)	CpG	1096	NM_001318202	29109		NM_013241	ENSG00000135723	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
43936	chr11	93444671	93444830	+	0	NA	Intergenic	L1PA6|LINE|L1	98641	NM_020179	56935		NM_020179	ENSG00000166002	SMCO4	C11orf75|FN5	single-pass membrane protein with coiled-coil domains 4	protein-coding
232678	chr9	136516851	136517150	+	0	NA	intron (NM_017617, intron 9 of 33)	intron (NM_017617, intron 9 of 33)	2626	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
92063	chr17	7511201	7511850	+	0	NA	exon (NM_000937, exon 24 of 30)	exon (NM_000937, exon 24 of 30)	27159	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
109826	chr19	1172971	1173500	+	0	NA	intron (NM_014963, intron 1 of 31)	intron (NM_014963, intron 1 of 31)	1033	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
213730	chr7	140362871	140363030	+	0	NA	intron (NM_032295, intron 5 of 11)	SVA_E|Retroposon|SVA	35580	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
122583	chr19	49688571	49688900	+	0	NA	promoter-TSS (NM_001101340)	promoter-TSS (NM_001101340)	50	NM_001101340	199800		NM_001101340	ENSG00000224420	ADM5	AM5|C19orf76	adrenomedullin 5 (putative)	protein-coding
58286	chr12	130571251	130571350	+	0	NA	intron (NM_001351226, intron 2 of 21)	intron (NM_001351226, intron 2 of 21)	57156	NM_015347	23504		NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding
227901	chr9	94029471	94029630	+	0	NA	Intergenic	Intergenic	-1263	NM_177995	138639		NM_152422	ENSG00000158079	PTPDC1	PTP9Q22	protein tyrosine phosphatase domain containing 1	protein-coding
217954	chr8	38184371	38184830	+	0	NA	intron (NM_001204878, intron 1 of 3)	intron (NM_001204878, intron 1 of 3)	7745	NM_004874	9530		NM_004874	ENSG00000156735	BAG4	BAG-4|SODD	BAG cochaperone 4	protein-coding
27980	chr10	42866321	42866850	+	0	NA	Intergenic	CpG	-4936	NR_134479	101929445		NR_134479	ENSG00000234944	LINC02623	-	long intergenic non-protein coding RNA 2623	ncRNA
40685	chr11	64769771	64769930	+	0	NA	intron (NM_201995, intron 5 of 13)	intron (NM_201995, intron 5 of 13)	7911	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
44351	chr11	102435801	102436000	+	0	NA	intron (NM_052932, intron 2 of 4)	L1MB7|LINE|L1	16865	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
120059	chr19	42068801	42070580	+	0	NA	intron (NM_001330519, intron 1 of 1)	intron (NM_001330519, intron 1 of 1)	1213	NM_001330519	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
22976	chr1	226077271	226078080	+	0	NA	Intergenic	AluSz|SINE|Alu	-5900	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
108107	chr18	62183521	62183850	+	0	NA	intron (NM_176787, intron 1 of 30)	L2b|LINE|L2	3371	NM_176787	23556		NM_012327	ENSG00000197563	PIGN	MCAHS|MCAHS1|MCD4|MDC4|PIG-N	phosphatidylinositol glycan anchor biosynthesis class N	protein-coding
110339	chr19	1874551	1875260	+	0	NA	Intergenic	Intergenic	10591	NM_001130111	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
238109	chrX	136630571	136631250	+	0	NA	Intergenic	Intergenic	-8633	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
88390	chr16	84616071	84616930	+	0	NA	intron (NM_021149, intron 2 of 3)	AluSx1|SINE|Alu	1578	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
167178	chr3	128121651	128122180	+	0	NA	intron (NM_001319086, intron 1 of 9)	intron (NM_001319086, intron 1 of 9)	1897	NM_001319084	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
34480	chr10	132512471	132512630	+	0	NA	intron (NR_158224, intron 2 of 3)	intron (NR_158224, intron 2 of 3)	24373	NR_158224	107984282		NR_158224		LOC107984282	-	uncharacterized LOC107984282	ncRNA
145317	chr20	41074401	41075130	+	0	NA	intron (NM_003286, intron 3 of 20)	intron (NM_003286, intron 3 of 20)	45943	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
161550	chr3	42659271	42659780	+	0	NA	exon (NM_145166, exon 2 of 6)	exon (NM_145166, exon 2 of 6)	-5137	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
98719	chr17	47999601	47999860	+	0	NA	Intergenic	Intergenic	28617	NM_001278198	80279		NM_025197	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding
176995	chr4	105236651	105236950	+	0	NA	exon (NM_017628, exon 3 of 3)	exon (NM_017628, exon 3 of 3)	89924	NM_001127208	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
208735	chr7	73436701	73437300	+	0	NA	TTS (NM_003508)	TTS (NM_003508)	3222	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
217604	chr8	29722951	29723400	+	0	NA	intron (NR_026765, intron 3 of 3)	intron (NR_026765, intron 3 of 3)	24934	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
47621	chr12	6135621	6135700	+	0	NA	Intergenic	AluYc|SINE|Alu	-10990	NM_000552	7450		NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
227651	chr9	92963671	92965700	+	0	NA	intron (NM_001369951, intron 1 of 17)	intron (NM_001369951, intron 1 of 17)	678	NM_001369951	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
114837	chr19	13828471	13828880	+	0	NA	exon (NM_001367834, exon 13 of 14)	exon (NM_001367834, exon 13 of 14)	7684	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
58073	chr12	124550801	124551650	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	16387	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
116693	chr19	18426921	18427380	+	0	NA	intron (NM_032627, intron 1 of 17)	intron (NM_032627, intron 1 of 17)	7752	NM_032627	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
230581	chr9	128558271	128559380	+	0	NA	intron (NM_001375312, intron 2 of 57)	intron (NM_001375312, intron 2 of 57)	6238	NM_001375314	6709		NM_003127	ENSG00000197694	SPTAN1	DEE5|DEVEP|EIEE5|HMN11|HMND11|NEAS|SPG91|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
156613	chr22	41567821	41568080	+	0	NA	intron (NM_014460, intron 1 of 3)	intron (NM_014460, intron 1 of 3)	6940	NM_014460	27254		NM_014460	ENSG00000172346	CSDC2	PIPPIN|dJ347H13.2	cold shock domain containing C2	protein-coding
39884	chr11	62491601	62491800	+	0	NA	intron (NM_024060, intron 5 of 5)	intron (NM_024060, intron 5 of 5)	53964	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
88365	chr16	84590271	84590630	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	27628	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
137060	chr2	190896601	190896800	+	0	NA	intron (NM_014905, intron 3 of 17)	intron (NM_014905, intron 3 of 17)	15879	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
9341	chr1	46660071	46660230	+	0	NA	intron (NM_022745, intron 2 of 8)	AluSz|SINE|Alu	5728	NM_001256418	64756		NM_022745	ENSG00000123472	ATPAF1	ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding
175040	chr4	52823501	52823700	+	0	NA	Intergenic	Intergenic	33606	NR_040106	152578		NR_040106	ENSG00000250302	LINC01618	-	long intergenic non-protein coding RNA 1618	ncRNA
93997	chr17	22521351	22521490	+	0	NA	Intergenic	Intergenic	-1691	NM_001190452	100462977		NM_001190452		MTRNR2L1	HN1	MT-RNR2 like 1 (pseudogene)	pseudo
32202	chr10	101772821	101774030	+	0	NA	intron (NM_001206389, intron 3 of 4)	intron (NM_001206389, intron 3 of 4)	2689	NM_033164	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
49039	chr12	14383421	14383780	+	0	NA	intron (NM_001286515, intron 1 of 12)	AluJr4|SINE|Alu	-1681	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
192082	chr6	16670451	16671230	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	89344	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
92301	chr17	8114401	8114830	+	0	NA	intron (NM_021628, intron 5 of 15)	intron (NM_021628, intron 5 of 15)	3688	NM_001369446	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
46953	chr11	134444401	134444800	+	0	NA	intron (NR_033852, intron 1 of 5)	THE1B|LTR|ERVL-MaLR	8118	NR_033852	283177		NR_033852	ENSG00000255545	B3GAT1-DT	-	B3GAT1 divergent transcript	ncRNA
157469	chr22	45286351	45286450	+	0	NA	intron (NM_001167574, intron 2 of 3)	MIRb|SINE|MIR	1451	NM_001167574	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
147799	chr20	62645971	62646130	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	3547	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
92972	chr17	17114851	17115150	+	0	NA	intron (NM_015134, intron 3 of 22)	intron (NM_015134, intron 3 of 22)	72543	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
220952	chr8	109525001	109525480	+	0	NA	intron (NM_177531, intron 76 of 77)	intron (NM_177531, intron 76 of 77)	-14460	NM_198120	9166		NM_004215	ENSG00000147654	EBAG9	EB9|PDAF	estrogen receptor binding site associated antigen 9	protein-coding
154416	chr22	35334101	35335100	+	0	NA	intron (NR_156428, intron 10 of 13)	intron (NR_156428, intron 10 of 13)	-1040	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
114496	chr19	12771801	12772180	+	0	NA	intron (NM_013312, intron 7 of 22)	intron (NM_013312, intron 7 of 22)	3562	NM_001100176	29911		NM_013312	ENSG00000095066	HOOK2	HK2	hook microtubule tethering protein 2	protein-coding
146052	chr20	47362701	47362930	+	0	NA	Intergenic	Intergenic	-5926	NM_001281769	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
159667	chr3	15376851	15377150	+	0	NA	Intergenic	AluSq2|SINE|Alu	-35620	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
156714	chr22	41782301	41783200	+	0	NA	intron (NM_152513, intron 24 of 30)	intron (NM_152513, intron 24 of 30)	-17929	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
116794	chr19	18523871	18524980	+	0	NA	Intergenic	AluJo|SINE|Alu	-2355	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
217703	chr8	30133651	30134780	+	0	NA	intron (NM_001100916, intron 2 of 2)	AluSc|SINE|Alu	10450	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
131635	chr2	97081671	97082030	+	0	NA	Intergenic	Intergenic	13032	NM_199336	151313		NM_199336	ENSG00000144199	FAHD2B	-	fumarylacetoacetate hydrolase domain containing 2B	protein-coding
198557	chr6	106628021	106628280	+	0	NA	intron (NM_001318746, intron 1 of 8)	intron (NM_001318746, intron 1 of 8)	1348	NM_032730	84816		NM_032730	ENSG00000130347	RTN4IP1	NIMP|OPA10	reticulon 4 interacting protein 1	protein-coding
102666	chr17	76083671	76084500	+	0	NA	exon (NM_015219, exon 17 of 18)	exon (NM_015219, exon 17 of 18)	4903	NM_180990	353174		NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding
138438	chr2	206081051	206081630	+	0	NA	intron (NM_017759, intron 1 of 10)	intron (NM_017759, intron 1 of 10)	4834	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
202160	chr6	155268121	155268450	+	0	NA	intron (NM_001001346, intron 1 of 1)	intron (NM_001001346, intron 1 of 1)	4272	NM_001001346	49861		NM_001001346	ENSG00000171217	CLDN20	-	claudin 20	protein-coding
56915	chr12	120423051	120423350	+	0	NA	Intergenic	MIRb|SINE|MIR	-14913	NM_004373	1337		NM_004373	ENSG00000111775	COX6A1	CMTRID|COX6A|COX6AL	cytochrome c oxidase subunit 6A1	protein-coding
220602	chr8	100913651	100914380	+	0	NA	Intergenic	Intergenic	36556	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
186514	chr5	138348671	138349230	+	0	NA	3' UTR (NM_001350195, exon 5 of 5)	3' UTR (NM_001350195, exon 5 of 5)	-3735	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
105400	chr17	82754771	82755130	+	0	NA	intron (NM_005993, intron 1 of 38)	MER4D1|LTR|ERV1	2885	NM_005993	6904		NM_005993	ENSG00000141556	TBCD	PEBAT|SSD-1|tfcD	tubulin folding cofactor D	protein-coding
155204	chr22	37842201	37842400	+	0	NA	intron (NM_001349853, intron 1 of 7)	intron (NM_001349853, intron 1 of 7)	1548	NM_001363839	129138		NM_138797	ENSG00000100124	ANKRD54	LIAR	ankyrin repeat domain 54	protein-coding
204236	chr7	2544251	2544500	+	0	NA	intron (NM_001350627, intron 3 of 12)	AluSx1|SINE|Alu	11149	NR_146879	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
5522	chr1	25798801	25799200	+	0	NA	Intergenic	MIRb|SINE|MIR	-1193	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
144718	chr20	36564201	36565280	+	0	NA	intron (NR_109939, intron 2 of 4)	L1M4|LINE|L1	8535	NR_109939	101926987		NR_109939	ENSG00000232907	DLGAP4-AS1	CCAT7	DLGAP4 antisense RNA 1	ncRNA
114468	chr19	12732271	12732650	+	0	NA	intron (NR_138095, intron 1 of 2)	intron (NR_138095, intron 1 of 2)	2224	NM_001329738	79002		NM_024038	ENSG00000123144	TRIR	C19orf43|TERCIR|fSAP18	telomerase RNA component interacting RNase	protein-coding
185361	chr5	127492851	127493230	+	0	NA	Intergenic	Intergenic	-24600	NM_130809	133619		NM_130809	ENSG00000164244	PRRC1	-	proline rich coiled-coil 1	protein-coding
73141	chr15	41382851	41383150	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	19496	NR_045620	51103		NM_016013	ENSG00000137806	NDUFAF1	CGI-65|CGI65|CIA30|MC1DN11	NADH:ubiquinone oxidoreductase complex assembly factor 1	protein-coding
203756	chr7	1172601	1173430	+	0	NA	Intergenic	Intergenic	12230	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
21427	chr1	205324901	205325800	+	0	NA	Intergenic	L2c|LINE|L2	-3605	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
232800	chr9	136708871	136709030	+	0	NA	Intergenic	AluY|SINE|Alu	-3622	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
84153	chr16	29748001	29749050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2535	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
73848	chr15	50003401	50004000	+	0	NA	intron (NM_024837, intron 7 of 27)	intron (NM_024837, intron 7 of 27)	109679	NR_073598	79895		NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
56727	chr12	120119371	120119980	+	0	NA	Intergenic	Intergenic	-2922	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
162232	chr3	47142021	47142750	+	0	NA	intron (NR_146158, intron 1 of 21)	AluJr|SINE|Alu	21728	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
174262	chr4	38106951	38107130	+	0	NA	intron (NM_015173, intron 15 of 19)	intron (NM_015173, intron 15 of 19)	-3141	NM_001253913	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
102698	chr17	76139021	76139350	+	0	NA	intron (NM_001454, intron 2 of 2)	intron (NM_001454, intron 2 of 2)	-1371	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
227378	chr9	89498901	89500180	+	0	NA	Intergenic	Intergenic	-1427	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
126448	chr2	28247121	28247380	+	0	NA	intron (NM_199193, intron 11 of 13)	MIR3|SINE|MIR	-40289	NR_120504	100505736		NR_120504		LOC100505736	-	uncharacterized LOC100505736	ncRNA
47570	chr12	4392351	4392650	+	0	NA	Intergenic	Intergenic	-12788	NM_020638	8074		NM_020638	ENSG00000118972	FGF23	ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC	fibroblast growth factor 23	protein-coding
55053	chr12	96432321	96432580	+	0	NA	Intergenic	PABL_A|LTR|ERV1	-32011	NM_001170464	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
122055	chr19	48668471	48668630	+	0	NA	intron (NR_004401, intron 3 of 4)	intron (NR_004401, intron 3 of 4)	4467	NM_145807	126147		NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
163509	chr3	51392921	51393180	+	0	NA	exon (NM_013286, exon 1 of 1)	exon (NM_013286, exon 1 of 1)	1765	NM_013286	29890		NM_013286	ENSG00000259956	RBM15B	HUMAGCGB|HsOTT3|OTT3	RNA binding motif protein 15B	protein-coding
208869	chr7	73734321	73735280	+	0	NA	promoter-TSS (NR_026690)	promoter-TSS (NR_026690)	-269	NR_026690	171022		NR_026690		ABHD11-AS1	LINC00035|NCRNA00035|WBSCR26	ABHD11 antisense RNA 1 (tail to tail)	ncRNA
110033	chr19	1458701	1458900	+	0	NA	intron (NM_005883, intron 10 of 14)	AluSx1|SINE|Alu	5816	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
138867	chr2	216777851	216777950	+	0	NA	Intergenic	Intergenic	82164	NM_003284	7141		NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1	protein-coding
41182	chr11	65628801	65629200	+	0	NA	intron (NM_032223, intron 24 of 34)	intron (NM_032223, intron 24 of 34)	-7310	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
169258	chr3	157164401	157164800	+	0	NA	Intergenic	Intergenic	-4453	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
120353	chr19	43591071	43591600	+	0	NA	3' UTR (NM_001007561, exon 3 of 3)	3' UTR (NM_001007561, exon 3 of 3)	4800	NM_001007561	126298		NM_001007561	ENSG00000167378	IRGQ	FKSG27|IRGQ1	immunity related GTPase Q	protein-coding
96244	chr17	39820601	39821250	+	0	NA	intron (NM_001257408, intron 2 of 6)	MER21B|LTR|ERVL	-42700	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
112335	chr19	5915971	5916150	+	0	NA	TTS (NM_007322)	TTS (NM_007322)	1806	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
72887	chr15	40319601	40320100	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-3842	NM_001301268	100505573		NM_001301268	ENSG00000259330	INAFM2	LINC00984|OGU1	InaF motif containing 2	protein-coding
189610	chr5	175951551	175952100	+	0	NA	Intergenic	Intergenic	16490	NM_001376902	84321		NM_032361	ENSG00000051596	THOC3	THO3|hTREX45	THO complex subunit 3	protein-coding
42586	chr11	72006901	72007100	+	0	NA	intron (NM_001286561, intron 21 of 26)	MIRc|SINE|MIR	7073	NM_001145055	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
101131	chr17	65036071	65036230	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	19624	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
8197	chr1	39576401	39577680	+	0	NA	promoter-TSS (NM_001135653)	promoter-TSS (NM_001135653)	-250	NM_003819	8761		NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
145084	chr20	38675401	38675680	+	0	NA	Intergenic	L2a|LINE|L2	-48946	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
67880	chr14	74299971	74300430	+	0	NA	exon (NM_001353592, exon 2 of 17)	exon (NM_001353592, exon 2 of 17)	2734	NM_020324	5826		NM_005050	ENSG00000119688	ABCD4	ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L	ATP binding cassette subfamily D member 4	protein-coding
30553	chr10	79707321	79707580	+	0	NA	intron (NM_001278495, intron 2 of 6)	intron (NM_001278495, intron 2 of 6)	4223	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
45015	chr11	117012921	117013180	+	0	NA	intron (NM_001281748, intron 1 of 24)	MADE1|DNA|TcMar-Mariner	85378	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
79905	chr16	1637301	1637900	+	0	NA	intron (NM_020825, intron 4 of 20)	intron (NM_020825, intron 4 of 20)	25240	NM_020825	57585		NM_020825	ENSG00000007545	CRAMP1	CRAMP1L|HN1L|TCE4	cramped chromatin regulator homolog 1	protein-coding
74597	chr15	60572471	60573180	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	19701	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
44896	chr11	114739151	114739330	+	0	NA	Intergenic	(TAT)n|Simple_repeat|Simple_repeat	60713	NM_182495	120406		NM_182495	ENSG00000204361	NXPE2	FAM55B	neurexophilin and PC-esterase domain family member 2	protein-coding
62876	chr13	110646201	110646400	+	0	NA	intron (NM_001352252, intron 12 of 15)	intron (NM_001352252, intron 12 of 15)	30672	NM_001242881	55739		NM_018210	ENSG00000213995	NAXD	CARKD|LP3298|PEBEL2	NAD(P)HX dehydratase	protein-coding
53501	chr12	66311001	66311400	+	0	NA	intron (NR_135081, intron 4 of 11)	AluJb|SINE|Alu	8655	NR_135080	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
99313	chr17	49821721	49821980	+	0	NA	intron (NM_001199155, intron 10 of 13)	intron (NM_001199155, intron 10 of 13)	-24036	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
135593	chr2	166802471	166802880	+	0	NA	Intergenic	Intergenic	-85805	NM_152381	129446		NM_152381	ENSG00000163092	XIRP2	CMYA3	xin actin binding repeat containing 2	protein-coding
24361	chr1	241423971	241424630	+	0	NA	Intergenic	Intergenic	-67070	NM_002924	6000		NM_002924	ENSG00000182901	RGS7	-	regulator of G protein signaling 7	protein-coding
29304	chr10	69323951	69324050	+	0	NA	intron (NM_000188, intron 1 of 17)	intron (NM_000188, intron 1 of 17)	5153	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
65464	chr14	51781351	51781650	+	0	NA	Intergenic	Intergenic	64217	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
109595	chr19	923371	923830	+	0	NA	Intergenic	Intergenic	-2435	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
10817	chr1	77888471	77889180	+	0	NA	non-coding (NR_103535, exon 2 of 3)	non-coding (NR_103535, exon 2 of 3)	201	NM_144573	91624		NM_144573	ENSG00000162614	NEXN	CMH20|NELIN	nexilin F-actin binding protein	protein-coding
193315	chr6	30112101	30112300	+	0	NA	intron (NR_126470, intron 3 of 3)	intron (NR_126470, intron 3 of 3)	890	NR_134870	11074		NM_007028	ENSG00000204616	TRIM31	C6orf13|HCG1|HCGI|RNF	tripartite motif containing 31	protein-coding
224732	chr9	21685151	21685250	+	0	NA	Intergenic	Intergenic	-117436	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
132230	chr2	102350301	102350500	+	0	NA	intron (NM_016232, intron 10 of 10)	intron (NM_016232, intron 10 of 10)	-5396	NM_001371419	8809		NM_003855	ENSG00000115604	IL18R1	CD218a|CDw218a|IL-18R-alpha|IL-18Ralpha|IL-1Rrp|IL18RA|IL18Ralpha2|IL1RRP	interleukin 18 receptor 1	protein-coding
223252	chr8	143681321	143681580	+	0	NA	Intergenic	MER57A-int|LTR|ERV1	-3029	NM_001100599	286075		NM_173831	ENSG00000181135	ZNF707	-	zinc finger protein 707	protein-coding
118136	chr19	34974351	34974650	+	0	NA	Intergenic	Intergenic	-10271	NM_175872	126375		NM_175872	ENSG00000180884	ZNF792	-	zinc finger protein 792	protein-coding
230306	chr9	127955271	127956400	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	-5121	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
191862	chr6	15266321	15266780	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	17695	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
150772	chr21	43807701	43807900	+	0	NA	intron (NR_026961, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	4767	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
69016	chr14	91506571	91507330	+	0	NA	intron (NR_158976, intron 2 of 16)	intron (NR_158976, intron 2 of 16)	3360	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
218630	chr8	56209951	56210450	+	0	NA	intron (NM_002655, intron 1 of 4)	intron (NM_002655, intron 1 of 4)	1073	NM_001114635	5324		NM_002655	ENSG00000181690	PLAG1	PSA|SGPA|SRS4|ZNF912	PLAG1 zinc finger	protein-coding
31588	chr10	97350571	97350930	+	0	NA	Intergenic	Intergenic	-16021	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
138361	chr2	203943421	203944280	+	0	NA	intron (NM_012092, intron 1 of 4)	L1PBa1|LINE|L1	7087	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123561	chr19	54430121	54431180	+	0	NA	intron (NM_020659, intron 8 of 13).4	intron (NM_020659, intron 8 of 13).4	15186	NM_020659	57348		NM_020659	ENSG00000167614	TTYH1	-	tweety family member 1	protein-coding
206508	chr7	33705421	33705880	+	0	NA	Intergenic	Intergenic	-20331	NR_165282	55025		NM_017937	ENSG00000173862	FLJ20712	-	uncharacterized FLJ20712	ncRNA
31312	chr10	92681521	92681830	+	0	NA	Intergenic	L1MB7|LINE|L1	-8280	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
104806	chr17	81801451	81801750	+	0	NA	Intergenic	MER31B|LTR|ERV1	-2550	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
91211	chr17	3920801	3921250	+	0	NA	Intergenic	L1ME1|LINE|L1	-4560	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
95219	chr17	35252921	35253180	+	0	NA	intron (NM_144975, intron 1 of 4)	MLT1A0|LTR|ERVL-MaLR	9978	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
75116	chr15	64508671	64509030	+	0	NA	intron (NM_015042, intron 2 of 9)	AluJb|SINE|Alu	48272	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
14934	chr1	147595771	147595930	+	0	NA	intron (NM_004326, intron 1 of 9)	intron (NM_004326, intron 1 of 9)	54349	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
55786	chr12	108625621	108625880	+	0	NA	intron (NM_003006, intron 1 of 1)	intron (NM_003006, intron 1 of 1)	6331	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
78548	chr15	92979071	92979430	+	0	NA	exon (NM_001271, exon 22 of 39)	exon (NM_001271, exon 22 of 39)	74851	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
134198	chr2	134411521	134412280	+	0	NA	intron (NM_001371457, intron 12 of 16)	intron (NM_001371457, intron 12 of 16)	157828	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
185867	chr5	132558321	132558880	+	0	NA	intron (NM_005732, intron 1 of 24)	AluSx|SINE|Alu	1623	NM_005732	10111		NM_005732	ENSG00000113522	RAD50	NBSLD|RAD502|hRad50	RAD50 double strand break repair protein	protein-coding
34266	chr10	131883001	131883200	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-17908	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
140595	chr2	233384221	233384680	+	0	NA	intron (NM_152879, intron 1 of 29)	intron (NM_152879, intron 1 of 29)	-3704	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
220420	chr8	100283151	100283850	+	0	NA	intron (NM_183419, intron 2 of 9)	intron (NM_183419, intron 2 of 9)	18693	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
234948	chrX	38805281	38806250	+	0	NA	3' UTR (NM_001098791, exon 2 of 2)	3' UTR (NM_001098791, exon 2 of 2)	-1882	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
23484	chr1	228632951	228633050	+	0	NA	Intergenic	CpG	-2492	NR_023366	100169755		NR_023366	ENSG00000200381	RNA5S4	RN5S4	RNA, 5S ribosomal 4	rRNA
132384	chr2	105774551	105775330	+	0	NA	intron (NM_001004722, intron 1 of 3)	AluJr|SINE|Alu	29877	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
58108	chr12	124773121	124773650	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	66286	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
176482	chr4	89836851	89838050	+	0	NA	promoter-TSS (NM_007308)	promoter-TSS (NM_007308)	-289	NM_000345	6622		NM_000345	ENSG00000145335	SNCA	NACP|PARK1|PARK4|PD1	synuclein alpha	protein-coding
26963	chr10	26646001	26646200	+	0	NA	non-coding (NR_026794, exon 1 of 5)	non-coding (NR_026794, exon 1 of 5)	2992	NR_026794	731789		NR_026794		FAM238B	LINC00202-2	family with sequence similarity 238 member B	ncRNA
88020	chr16	81037371	81037530	+	0	NA	5' UTR (NM_001300728, exon 1 of 4)	5' UTR (NM_001300728, exon 1 of 4)	252	NM_001300728	23300		NM_015251	ENSG00000166454	ATMIN	ASCIZ|ZNF822	ATM interactor	protein-coding
54231	chr12	80187601	80187800	+	0	NA	intron (NM_001368062, intron 5 of 62)	intron (NM_001368062, intron 5 of 62)	-21514	NM_173591	283310		NM_173591	ENSG00000165899	OTOGL	C12orf64|DFNB84B	otogelin like	protein-coding
58460	chr12	132104421	132104680	+	0	NA	intron (NR_003290, intron 3 of 9)	intron (NR_003290, intron 3 of 9)	20267	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
225540	chr9	35813351	35813650	+	0	NA	exon (NM_032593, exon 3 of 5)	exon (NM_032593, exon 3 of 5)	-1238	NM_001039592	26206		NM_012436	ENSG00000137098	SPAG8	BS-84|CILD28|CT142|HSD-1|SMP1|SPAG3|hSMP-1	sperm associated antigen 8	protein-coding
182469	chr5	62338151	62338450	+	0	NA	intron (NM_001243952, intron 2 of 20)	AluSx1|SINE|Alu	32094	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
139894	chr2	230710621	230711080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1992	NM_016289	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
64124	chr14	22847871	22848030	+	0	NA	TTS (NM_004995)	TTS (NM_004995)	11365	NM_004995	4323		NM_004995	ENSG00000157227	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14	protein-coding
83603	chr16	28187601	28188080	+	0	NA	intron (NM_015171, intron 1 of 23)	intron (NM_015171, intron 1 of 23)	24125	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
202313	chr6	157274211	157275730	+	0	NA	Intergenic	CpG	48549	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
10034	chr1	58250071	58250430	+	0	NA	5' UTR (NM_001379462, exon 1 of 18)	5' UTR (NM_001379462, exon 1 of 18)	253	NM_001379462	1600		NM_021080	ENSG00000173406	DAB1	SCA37	DAB adaptor protein 1	protein-coding
188593	chr5	157171051	157171350	+	0	NA	Intergenic	L2a|LINE|L2	-4936	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
200015	chr6	129500851	129501150	+	0	NA	intron (NM_000426, intron 58 of 64)	intron (NM_000426, intron 58 of 64)	209177	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
116288	chr19	17749101	17749330	+	0	NA	intron (NR_169231, intron 1 of 25)	intron (NR_169231, intron 1 of 25)	1471	NR_169240	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
58495	chr12	132161071	132161930	+	0	NA	Intergenic	Intergenic	17043	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
58801	chr12	132776171	132776530	+	0	NA	intron (NM_005895, intron 21 of 23)	intron (NM_005895, intron 21 of 23)	-14518	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
57407	chr12	121830801	121831450	+	0	NA	3' UTR (NM_001353345, exon 17 of 17)	3' UTR (NM_001353345, exon 17 of 17)	27116	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
214207	chr7	148698001	148700350	+	0	NA	promoter-TSS (NM_001370664)	promoter-TSS (NM_001370664)	272	NM_003592	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
99235	chr17	49680021	49680600	+	0	NA	Intergenic	Intergenic	-2147	NM_001007226	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
167062	chr3	126981371	126981530	+	0	NA	Intergenic	AluJo|SINE|Alu	-7144	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
142599	chr20	5580721	5581430	+	0	NA	intron (NM_019593, intron 6 of 19)	AluSz|SINE|Alu	29931	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
53429	chr12	65120951	65121800	+	0	NA	promoter-TSS (NM_007191)	promoter-TSS (NM_007191)	-70	NM_007191	11197		NM_007191	ENSG00000156076	WIF1	WIF-1	WNT inhibitory factor 1	protein-coding
83069	chr16	22356471	22356630	+	0	NA	intron (NM_001802, intron 2 of 4)	AluSq10|SINE|Alu	18069	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
148463	chr20	64034051	64034300	+	0	NA	intron (NM_001348090, intron 2 of 6)	intron (NM_001348090, intron 2 of 6)	448	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
173103	chr4	6331971	6332400	+	0	NA	intron (NM_001206995, intron 8 of 9)	intron (NM_001206995, intron 8 of 9)	49683	NM_181876	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
158793	chr3	9648921	9650550	+	0	NA	exon (NM_001077526, exon 1 of 18)	exon (NM_001077526, exon 1 of 18)	230	NM_022485	64419		NM_022485	ENSG00000163719	MTMR14	C3orf29	myotubularin related protein 14	protein-coding
118713	chr19	38225971	38226800	+	0	NA	intron (NM_001363579, intron 1 of 11)	intron (NM_001363579, intron 1 of 11)	-2163	NM_004647	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
94638	chr17	30104121	30105200	+	0	NA	intron (NM_198529, intron 22 of 22)	intron (NM_198529, intron 22 of 22)	-12147	NM_001261467	84081		NM_032141	ENSG00000126653	NSRP1	CCDC55|HSPC095|NEDSSBA|NSrp70	nuclear speckle splicing regulatory protein 1	protein-coding
180465	chr5	10759371	10759530	+	0	NA	intron (NM_001291963, intron 1 of 2)	intron (NM_001291963, intron 1 of 2)	1784	NM_004394	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
131552	chr2	96766971	96767330	+	0	NA	intron (NM_020184, intron 1 of 6)	intron (NM_020184, intron 1 of 6)	6248	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
17923	chr1	160262201	160263930	+	0	NA	promoter-TSS (NM_015726)	promoter-TSS (NM_015726)	-516	NR_028104	50717		NM_015726	ENSG00000132716	DCAF8	GAN2|H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding
113155	chr19	8347851	8348180	+	0	NA	Intergenic	L1ME3B|LINE|L1	-4753	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
178828	chr4	153571971	153572130	+	0	NA	intron (NM_015196, intron 7 of 34)	intron (NM_015196, intron 7 of 34)	-68118	NR_134873	100419170		NR_134873	ENSG00000290441	LOC100419170	-	toll like receptor 2 pseudogene	pseudo
212503	chr7	128656971	128657480	+	0	NA	non-coding (NR_024368, exon 5 of 5)	non-coding (NR_024368, exon 5 of 5)	-15041	NM_001128926	346653		NM_001012454	ENSG00000205085	GARIN1A	FAM137B|FAM71F2|GARI	golgi associated RAB2 interactor 1A	protein-coding
17892	chr1	160092401	160093330	+	0	NA	intron (NM_052868, intron 4 of 6)	intron (NM_052868, intron 4 of 6)	5754	NM_052868	93185		NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
89282	chr16	88690151	88690250	+	0	NA	Intergenic	AluSx|SINE|Alu	-3693	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
231261	chr9	130000021	130000500	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluSx1|SINE|Alu	42929	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
111783	chr19	4440601	4441350	+	0	NA	intron (NM_005483, intron 13 of 14)	AluSx1|SINE|Alu	-5003	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
132017	chr2	100650021	100650480	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	46511	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
202019	chr6	152859351	152859450	+	0	NA	Intergenic	Intergenic	108603	NM_194435	7432		NM_003381	ENSG00000146469	VIP	PHM27	vasoactive intestinal peptide	protein-coding
9026	chr1	44773471	44773830	+	0	NA	Intergenic	AluSz|SINE|Alu	-1890	NM_001012	6202		NM_001012	ENSG00000142937	RPS8	S8|eS8	ribosomal protein S8	protein-coding
105622	chr18	800971	801330	+	0	NA	intron (NM_005433, intron 1 of 11)	AluSc5|SINE|Alu	11092	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
66863	chr14	64997151	64997550	+	0	NA	intron (NM_002028, intron 1 of 11)	LTR8A|LTR|ERV1	10455	NM_002028	2342		NM_002028	ENSG00000257365	FNTB	FPTB	farnesyltransferase, CAAX box, subunit beta	protein-coding
225273	chr9	34430721	34430980	+	0	NA	intron (NM_001184942, intron 1 of 5)	AluJb|SINE|Alu	27720	NM_001184942	203259		NM_147202	ENSG00000164970	FAM219A	C9orf25	family with sequence similarity 219 member A	protein-coding
71623	chr14	106712601	106713250	+	0	NA	Intergenic	Intergenic	138074	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
5872	chr1	26761271	26761430	+	0	NA	intron (NM_139135, intron 5 of 19)	intron (NM_139135, intron 5 of 19)	-25704	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
118614	chr19	36839471	36839700	+	0	NA	intron (NM_001242800, intron 1 of 4)	AluJb|SINE|Alu	-1198	NM_206894	388536		NM_206894	ENSG00000197863	ZNF790	-	zinc finger protein 790	protein-coding
158694	chr3	5220421	5220880	+	0	NA	TTS (NM_014674)	TTS (NM_014674)	29605	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
145811	chr20	45436451	45437230	+	0	NA	intron (NR_159957, intron 2 of 3)	CpG	9418	NR_159957	105372631		NR_159957		LOC105372631	-	uncharacterized LOC105372631	ncRNA
121981	chr19	48498051	48498530	+	0	NA	exon (NM_001080434, exon 12 of 16)	exon (NM_001080434, exon 12 of 16)	14899	NM_001080434	114783		NM_001080434	ENSG00000142235	LMTK3	LMR3|PPP1R101|TYKLM3	lemur tyrosine kinase 3	protein-coding
159305	chr3	12998371	12998980	+	0	NA	intron (NM_001134382, intron 1 of 13)	L1ME4b|LINE|L1	-11574	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
51618	chr12	52904971	52905980	+	0	NA	promoter-TSS (NM_002273)	promoter-TSS (NM_002273)	-399	NM_002273	3856		NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
232214	chr9	134366101	134366500	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-12995	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
175454	chr4	71306001	71306200	+	0	NA	intron (NM_001134742, intron 3 of 24)	intron (NM_001134742, intron 3 of 24)	-32920	NM_003759	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
104587	chr17	81392321	81392680	+	0	NA	Intergenic	Intergenic	-2957	NM_001377448	57597		NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
82804	chr16	21469271	21469630	+	0	NA	intron (NR_027155, intron 10 of 28)	A-rich|Low_complexity|Low_complexity	-32076	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
16651	chr1	155142521	155142980	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2219	NM_153741	54344		NM_018973	ENSG00000179085	DPM3	CDG1O|MDDGB15|MDDGC15	dolichyl-phosphate mannosyltransferase subunit 3, regulatory	protein-coding
145536	chr20	44137001	44137400	+	0	NA	intron (NM_020433, intron 2 of 5)	intron (NM_020433, intron 2 of 5)	49988	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
234589	chrX	19785651	19786280	+	0	NA	intron (NM_001353892, intron 2 of 17)	L1MB2|LINE|L1	13808	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
102912	chr17	76565071	76566000	+	0	NA	TTS (NR_038111)	TTS (NR_038111)	3902	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
114004	chr19	10862251	10862750	+	0	NA	intron (NM_001136482, intron 5 of 6)	AluJr|SINE|Alu	-9053	NM_199141	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
216318	chr8	12753301	12754800	+	0	NA	intron (NM_001329976, intron 1 of 11).2	intron (NM_001329976, intron 1 of 11).2	1476	NR_138255	91694		NM_152271	ENSG00000154359	LONRF1	RNF191	LON peptidase N-terminal domain and ring finger 1	protein-coding
128911	chr2	64228071	64228750	+	0	NA	promoter-TSS (NR_120420)	promoter-TSS (NR_120420)	9	NR_120420	100507006		NR_120420		LOC100507006	-	uncharacterized LOC100507006	ncRNA
124051	chr19	55580221	55581380	+	0	NA	promoter-TSS (NM_152600)	promoter-TSS (NM_152600)	48	NM_152600	163033		NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding
8368	chr1	40338621	40339650	+	0	NA	Intergenic	MIRb|SINE|MIR	-21849	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
111684	chr19	4266971	4267280	+	0	NA	intron (NM_018074, intron 6 of 7)	L2b|LINE|L2	-11944	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
11245	chr1	88982921	88983180	+	0	NA	exon (NM_001162536, exon 3 of 3)	exon (NM_001162536, exon 3 of 3)	9579	NM_001162536	494115		NM_019610	ENSG00000213516	RBMXL1	RBM1	RBMX like 1	protein-coding
102283	chr17	75316051	75316850	+	0	NA	Intergenic	AluJo|SINE|Alu	-27001	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
155810	chr22	39313201	39313880	+	0	NA	TTS (NR_000028)	TTS (NR_000028)	371	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
134166	chr2	134248771	134249130	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-5122	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
180572	chr5	14727451	14728180	+	0	NA	intron (NM_054027, intron 8 of 11)	L1MB2|LINE|L1	15121	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
67133	chr14	68664201	68664880	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	-35753	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
115890	chr19	16580521	16581130	+	0	NA	intron (NM_004831, intron 1 of 2)	MLT1E2|LTR|ERVL-MaLR	-8410	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
207117	chr7	42227751	42228130	+	0	NA	intron (NM_000168, intron 1 of 14)	intron (NM_000168, intron 1 of 14)	9269	NM_000168	2737		NM_000168	ENSG00000106571	GLI3	ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV	GLI family zinc finger 3	protein-coding
137119	chr2	191011171	191012200	+	0	NA	intron (NM_001384884, intron 2 of 24)	THE1D|LTR|ERVL-MaLR	2486	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
25507	chr10	7239251	7239780	+	0	NA	intron (NM_001029880, intron 9 of 20)	(CAC)n|Simple_repeat|Simple_repeat	-52731	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
114331	chr19	12137651	12138300	+	0	NA	intron (NM_021143, intron 1 of 3)	intron (NM_021143, intron 1 of 3)	2375	NM_001203250	7568		NM_021143	ENSG00000132010	ZNF20	KOX13	zinc finger protein 20	protein-coding
185438	chr5	131214351	131214450	+	0	NA	Intergenic	Intergenic	43456	NM_001293735	90624		NM_181705	ENSG00000186687	LYRM7	C5orf31|MC3DN8|MZM1L	LYR motif containing 7	protein-coding
234660	chrX	20139701	20139900	+	0	NA	promoter-TSS (NR_046592)	promoter-TSS (NR_046592)	-168	NR_046592	100874078		NR_046592	ENSG00000225037	EIF1AX-AS1	-	EIF1AX antisense RNA 1	ncRNA
138789	chr2	216090421	216090880	+	0	NA	intron (NM_001142310, intron 2 of 3)	MLT1F-int|LTR|ERVL-MaLR	8731	NM_138390	92691		NM_138390	ENSG00000163449	TMEM169	-	transmembrane protein 169	protein-coding
208787	chr7	73586071	73586700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7806	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
78756	chr15	99058921	99059580	+	0	NA	Intergenic	CpG	44546	NR_126487	104564224		NR_126487		LUNAR1	-	leukemia-associated non-coding IGF1R activator RNA 1	ncRNA
114885	chr19	13886821	13888450	+	0	NA	intron (NM_001345848, intron 5 of 7)	intron (NM_001345848, intron 5 of 7)	10386	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
99042	chr17	48889821	48890480	+	0	NA	intron (NR_135674, intron 2 of 3)	(AAAAG)n|Simple_repeat|Simple_repeat	-2637	NM_001002027	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
152094	chr22	19810021	19810480	+	0	NA	intron (NM_053004, intron 5 of 7)	intron (NM_053004, intron 5 of 7)	44624	NM_053004	54584		NM_053004	ENSG00000185838	GNB1L	DGCRK3|FKSG1|GY2|WDR14|WDVCF	G protein subunit beta 1 like	protein-coding
104902	chr17	81894351	81895030	+	0	NA	intron (NM_001002249, intron 3 of 3)	intron (NM_001002249, intron 3 of 3)	2763	NM_001289416	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
112014	chr19	5031221	5032050	+	0	NA	intron (NM_001370093, intron 2 of 11)	intron (NM_001370093, intron 2 of 11)	62522	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
83970	chr16	29227751	29228400	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-74212	NR_002939	440352		NR_002939		SNX29P2	RUNDC2C	sorting nexin 29 pseudogene 2	pseudo
82264	chr16	15144421	15144880	+	0	NA	Intergenic	Intergenic	-7691	NR_123721	105369154		NR_123721	ENSG00000270580	PKD1P6-NPIPP1	-	PKD1P6-NPIPP1 readthrough	pseudo
162150	chr3	46965351	46965900	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	10876	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
193807	chr6	31455251	31455550	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-7780	NR_040662	10866		NR_040662	ENSG00000206337	HCP5	6S2650E|D6S2650E|P5-1	HLA complex P5	ncRNA
99554	chr17	50391721	50391980	+	0	NA	intron (NM_018509, intron 4 of 6)	intron (NM_018509, intron 4 of 6)	5673	NM_018509	55379		NM_018509	ENSG00000108829	LRRC59	PRO1855|p34	leucine rich repeat containing 59	protein-coding
149163	chr21	17812251	17812850	+	0	NA	intron (NM_017447, intron 2 of 4)	AluY|SINE|Alu	6806	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
131719	chr2	97966951	97967050	+	0	NA	intron (NM_015348, intron 1 of 40)	intron (NM_015348, intron 1 of 40)	28948	NM_015348	23505		NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding
104652	chr17	81463071	81463380	+	0	NA	intron (NM_001377448, intron 27 of 27)	intron (NM_001377448, intron 27 of 27)	-12037	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
201717	chr6	149745201	149745400	+	0	NA	intron (NM_198887, intron 2 of 7)	AluSc8|SINE|Alu	1229	NR_104456	348995		NM_024647	ENSG00000120253	NUP43	bA350J20.1|p42	nucleoporin 43	protein-coding
237365	chrX	118974121	118974800	+	0	NA	promoter-TSS (NM_024778)	promoter-TSS (NM_024778)	-154	NR_110311	79836		NM_024778	ENSG00000175556	LONRF3	RNF127	LON peptidase N-terminal domain and ring finger 3	protein-coding
17501	chr1	156737221	156737680	+	0	NA	TTS (NM_001142560)	TTS (NM_001142560)	3638	NM_024540	79590		NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24|uL24m	mitochondrial ribosomal protein L24	protein-coding
98377	chr17	46432471	46432630	+	0	NA	Intergenic	Intergenic	59737	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
163798	chr3	52403171	52403330	+	0	NA	exon (NM_004656, exon 14 of 17)	exon (NM_004656, exon 14 of 17)	6758	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
234204	chrX	12954351	12955200	+	0	NA	Intergenic	Intergenic	-11475	NR_030727	349408		NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
42292	chr11	68380501	68380900	+	0	NA	intron (NM_002335, intron 5 of 22)	intron (NM_002335, intron 5 of 22)	68109	NM_002335	4041		NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2	LDL receptor related protein 5	protein-coding
64272	chr14	23320471	23322650	+	0	NA	promoter-TSS (NM_001360552)	promoter-TSS (NM_001360552)	103	NM_001360551	8106		NM_004643	ENSG00000100836	PABPN1	OPMD|PAB2|PABII|PABP-2|PABP2	poly(A) binding protein nuclear 1	protein-coding
30314	chr10	75400751	75400850	+	0	NA	promoter-TSS (NR_024421)	promoter-TSS (NR_024421)	-728	NR_024421	100131213		NR_024421	ENSG00000237149	ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	ncRNA
191966	chr6	16146201	16146800	+	0	NA	intron (NM_013262, intron 6 of 6)	intron (NM_013262, intron 6 of 6)	4944	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
214513	chr7	150479901	150480100	+	0	NA	TTS (NM_175571)	TTS (NM_175571)	29370	NM_175571	155038		NM_175571	ENSG00000171115	GIMAP8	IAN-9|IAN6|IAN9|IANT	GTPase, IMAP family member 8	protein-coding
29046	chr10	67779551	67780300	+	0	NA	Intergenic	Intergenic	58254	NM_201262	56521		NM_021800	ENSG00000108176	DNAJC12	HPANBH4|JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
174424	chr4	39455051	39456100	+	0	NA	intron (NM_000661, intron 5 of 7)	AluJb|SINE|Alu	3347	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
98668	chr17	47842101	47842330	+	0	NA	promoter-TSS (NM_001145023)	promoter-TSS (NM_001145023)	-942	NM_138355	90507		NM_138355	ENSG00000141295	SCRN2	Ses2	secernin 2	protein-coding
229547	chr9	122904581	122906050	+	0	NA	promoter-TSS (NM_001354482)	promoter-TSS (NM_001354482)	44	NM_001354486	54542		NM_018835	ENSG00000056586	RC3H2	MNAB|RNF164	ring finger and CCCH-type domains 2	protein-coding
190278	chr5	179553121	179553380	+	0	NA	intron (NM_025158, intron 1 of 17)	intron (NM_025158, intron 1 of 17)	2696	NM_025158	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
201689	chr6	149561621	149561950	+	0	NA	Intergenic	AluY|SINE|Alu	-4590	NM_138785	116254		NM_138785	ENSG00000055211	GINM1	C6orf72	glycosylated integral membrane protein 1	protein-coding
131687	chr2	97727901	97728880	+	0	NA	intron (NM_001079, intron 4 of 13)	intron (NM_001079, intron 4 of 13)	-4910	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
43277	chr11	75801521	75802180	+	0	NA	TTS (NM_001253891)	TTS (NM_001253891)	12947	NR_144531	100506113		NR_144531	ENSG00000255507	UVRAG-DT	-	UVRAG divergent transcript	ncRNA
204009	chr7	1884901	1885100	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	-40747	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
233933	chrX	2267651	2267750	+	0	NA	intron (NM_145177, intron 4 of 6)	AluSx3|SINE|Alu	232839	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
134007	chr2	130972421	130972750	+	0	NA	intron (NM_001375902, intron 2 of 10)	MER92-int|LTR|ERV1	8930	NM_001375904	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
100163	chr17	58619751	58619850	+	0	NA	intron (NM_198393, intron 5 of 32)	AluSx1|SINE|Alu	72245	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
160984	chr3	37228021	37228750	+	0	NA	Intergenic	Intergenic	-14886	NM_002078	2803		NM_002078	ENSG00000144674	GOLGA4	CRPF46|GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
117183	chr19	19358921	19359530	+	0	NA	TTS (NM_015329)	TTS (NM_015329)	-26618	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
16709	chr1	155233001	155233300	+	0	NA	Intergenic	Intergenic	-5616	NR_002188	2630		NR_002188	ENSG00000291137	GBA1LP	Beta-GC|GBA|GBAP|GBAP1|GC|GLUC	glucosylceramidase beta 1 like, pseudogene	pseudo
136542	chr2	177332101	177332670	+	0	NA	intron (NR_026966, intron 3 of 8)	intron (NR_026966, intron 3 of 8)	-18503	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
11032	chr1	84959271	84959830	+	0	NA	intron (NM_153259, intron 2 of 13)	(AC)n|Simple_repeat|Simple_repeat	37563	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
42561	chr11	71864001	71864330	+	0	NA	Intergenic	Intergenic	-14288	NM_001242853	100129216		NM_001242853	ENSG00000225805	DEFB131B	-	defensin beta 131B	protein-coding
189860	chr5	177141151	177141800	+	0	NA	intron (NM_172349, intron 3 of 23)	AluSx1|SINE|Alu	7246	NM_001365684	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
212217	chr7	120857051	120858100	+	0	NA	intron (NM_012338, intron 1 of 7)	CpG	569	NM_012338	23554		NM_012338	ENSG00000106025	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
80649	chr16	2999301	2999780	+	0	NA	intron (NR_110949, intron 1 of 3)	AluSz6|SINE|Alu	585	NR_110949	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
209296	chr7	75990771	75991450	+	0	NA	intron (NR_156695, intron 3 of 10)	intron (NR_156695, intron 3 of 10)	3485	NM_001363462	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
76007	chr15	71115221	71115880	+	0	NA	promoter-TSS (NR_168259)	promoter-TSS (NR_168259)	-46	NR_168259	196993		NM_001102658	ENSG00000225362	CT62	-	cancer/testis associated 62	ncRNA
201560	chr6	149301171	149301330	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	-16462	NM_001292034	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
111061	chr19	3130801	3131830	+	0	NA	Intergenic	Intergenic	-4718	NM_002068	2769		NM_002068	ENSG00000060558	GNA15	GNA16|HG1L	G protein subunit alpha 15	protein-coding
66203	chr14	61282201	61282400	+	0	NA	promoter-TSS (NM_001017970)	promoter-TSS (NM_001017970)	-962	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
143179	chr20	24208521	24208600	+	0	NA	intron (NR_040102, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	8793	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
18328	chr1	161187201	161188500	+	0	NA	3' UTR (NM_005099, exon 9 of 9)	3' UTR (NM_005099, exon 9 of 9)	-9567	NM_001377298	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
67406	chr14	69797951	69798800	+	0	NA	Intergenic	L3|LINE|CR1	-1134	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
125021	chr2	9576121	9576380	+	0	NA	Intergenic	AluSq2|SINE|Alu	-20420	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
9080	chr1	44844271	44844430	+	0	NA	Intergenic	Intergenic	-1097	NM_003738	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
208619	chr7	72964001	72964430	+	0	NA	intron (NM_198924, intron 2 of 4)	L2|LINE|L2	2738	NM_001317815	378108		NM_198853	ENSG00000155428	TRIM74	TRIM50C	tripartite motif containing 74	protein-coding
146117	chr20	48616651	48616950	+	0	NA	Intergenic	Intergenic	211199	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
176726	chr4	101327751	101328930	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	2074	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
138617	chr2	209771601	209772030	+	0	NA	promoter-TSS (NM_032504)	promoter-TSS (NM_032504)	-17	NM_001371986	285175		NM_032504	ENSG00000144406	UNC80	C2orf21|UNC-80	unc-80 homolog, NALCN channel complex subunit	protein-coding
204303	chr7	2687501	2687700	+	0	NA	promoter-TSS (NM_001284355)	promoter-TSS (NM_001284355)	-602	NM_001284355	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
229825	chr9	125744001	125744630	+	0	NA	intron (NR_122032, intron 1 of 1)	intron (NR_122032, intron 1 of 1)	1614	NR_122032	51145		NM_016158		PBX3-DT	-	PBX3 divergent transcript	ncRNA
156863	chr22	42075871	42076030	+	0	NA	intron (NM_001002034, intron 2 of 2)	LTR56|LTR|ERV1	1702	NM_001002034	150368		NM_001002034	ENSG00000177096	PHETA2	FAM109B|IPIP27B|Ses2	PH domain containing endocytic trafficking adaptor 2	protein-coding
67355	chr14	69702001	69702400	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	-64942	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
187406	chr5	141939551	141940080	+	0	NA	3' UTR (NM_001142603, exon 13 of 13)	3' UTR (NM_001142603, exon 13 of 13)	15944	NM_014773	9812		NM_014773	ENSG00000081791	DELE1	DELE|DELE1(L)|KIAA0141	DAP3 binding cell death enhancer 1	protein-coding
69228	chr14	92767901	92768850	+	0	NA	Intergenic	Intergenic	-19748	NM_001008530	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
34806	chr11	278101	278630	+	0	NA	promoter-TSS (NM_001276700)	promoter-TSS (NM_001276700)	-42	NM_001276700	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
23767	chr1	232952551	232953230	+	0	NA	intron (NR_138027, intron 1 of 4)	LTR16C|LTR|ERVL	2048	NR_138027	84284		NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase|THEP1	nucleoside-triphosphatase, cancer-related	protein-coding
157927	chr22	49782471	49783350	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	41421	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
59834	chr13	30455621	30455880	+	0	NA	TTS (NM_002128)	TTS (NM_002128)	8577	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
97785	chr17	44708301	44709530	+	0	NA	intron (NR_148207, intron 1 of 10)	intron (NR_148207, intron 1 of 10)	250	NR_148207	80174		NM_025104	ENSG00000161692	DBF4B	ASKL1|CHIFB|DRF1|ZDBF1B	DBF4B-CDC7 kinase regulatory subunit	protein-coding
236088	chrX	56777001	56777200	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-39516	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
203980	chr7	1667351	1667880	+	0	NA	Intergenic	CpG	-20504	NM_001128636	392617		NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding
64625	chr14	31024901	31025900	+	0	NA	promoter-TSS (NM_001128126)	promoter-TSS (NM_001128126)	-70	NM_007077	11154		NM_007077	ENSG00000100478	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor related protein complex 4 subunit sigma 1	protein-coding
147508	chr20	59178971	59179750	+	0	NA	intron (NM_178457, intron 1 of 5)	intron (NM_178457, intron 1 of 5)	15539	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
46459	chr11	128238971	128239330	+	0	NA	intron (NR_146647, intron 3 of 3)	intron (NR_146647, intron 3 of 3)	30384	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
168859	chr3	152282751	152283050	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-13274	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
84213	chr16	29899651	29901180	+	0	NA	promoter-TSS (NM_181718)	promoter-TSS (NM_181718)	-73	NM_181718	253982		NM_181718	ENSG00000174939	ASPHD1	-	aspartate beta-hydroxylase domain containing 1	protein-coding
119436	chr19	40392671	40394250	+	0	NA	TTS (NM_181882)	TTS (NM_181882)	-3279	NM_144685	147746		NM_144685	ENSG00000160396	HIPK4	-	homeodomain interacting protein kinase 4	protein-coding
38236	chr11	36461321	36461580	+	0	NA	intron (NM_001160167, intron 8 of 8)	AluSq|SINE|Alu	48822	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
115642	chr19	16110901	16112550	+	0	NA	promoter-TSS (NM_005370)	promoter-TSS (NM_005370)	-164	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
54430	chr12	91562221	91562880	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-379733	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
58261	chr12	128816571	128816730	+	0	NA	intron (NM_145648, intron 1 of 7)	AluJo|SINE|Alu	7308	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
10947	chr1	84162871	84163630	+	0	NA	promoter-TSS (NM_001242859)	promoter-TSS (NM_001242859)	-934	NM_001242857	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
90721	chr17	1908121	1908800	+	0	NA	Intergenic	CpG	78455	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
87732	chr16	75129751	75130050	+	0	NA	Intergenic	MER50|LTR|ERV1	-13120	NM_194436	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
209268	chr7	75905921	75906180	+	0	NA	Intergenic	Intergenic	-9105	NM_001382658	5447		NM_000941	ENSG00000127948	POR	CPR|CYPOR|P450R	cytochrome p450 oxidoreductase	protein-coding
130803	chr2	86948101	86948530	+	0	NA	intron (NM_001382344, intron 1 of 22)	intron (NM_001382344, intron 1 of 22)	6197	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
91410	chr17	4701371	4701880	+	0	NA	intron (NM_001278241, intron 1 of 18)	intron (NM_001278241, intron 1 of 18)	2512	NM_001278241	27043		NM_014389	ENSG00000141456	PELP1	MNAR|P160	proline, glutamate and leucine rich protein 1	protein-coding
102816	chr17	76452221	76453630	+	0	NA	promoter-TSS (NM_001166579)	promoter-TSS (NM_001166579)	227	NM_022066	63893		NM_022066	ENSG00000175931	UBE2O	E2-230K	ubiquitin conjugating enzyme E2 O	protein-coding
227915	chr9	94175471	94176350	+	0	NA	promoter-TSS (NR_029476)	promoter-TSS (NR_029476)	-47	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
222350	chr8	133556801	133557200	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	14887	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
65787	chr14	54566721	54567400	+	0	NA	promoter-TSS (NM_001161576)	promoter-TSS (NM_001161576)	-68	NM_015589	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
133332	chr2	113903301	113904330	+	0	NA	intron (NM_001277140, intron 1 of 11)	L1MEf|LINE|L1	-12823	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128532	chr2	60796221	60796680	+	0	NA	intron (NM_022894, intron 21 of 21)	intron (NM_022894, intron 21 of 21)	40182	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
102531	chr17	75820601	75821100	+	0	NA	intron (NM_001080419, intron 13 of 15)	intron (NM_001080419, intron 13 of 15)	23554	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
212030	chr7	114933251	114934030	+	0	NA	intron (NM_199072, intron 2 of 4)	L3|LINE|CR1	11486	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
95357	chr17	35856071	35856230	+	0	NA	intron (NM_152781, intron 13 of 14).2	intron (NM_152781, intron 13 of 14).2	12741	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
159817	chr3	16374601	16375450	+	0	NA	intron (NM_015150, intron 5 of 9)	intron (NM_015150, intron 5 of 9)	109813	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
18964	chr1	168578971	168579530	+	0	NA	intron (NM_002995, intron 1 of 2)	intron (NM_002995, intron 1 of 2)	2645	NM_002995	6375		NM_002995	ENSG00000143184	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	X-C motif chemokine ligand 1	protein-coding
119897	chr19	41554001	41554330	+	0	NA	intron (NM_001288773, intron 1 of 7)	PABL_A-int|LTR|ERV1	4647	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
172256	chr4	1381901	1382100	+	0	NA	intron (NM_001317935, intron 12 of 13)	intron (NM_001317935, intron 12 of 13)	24442	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
59017	chr13	20190201	20190730	+	0	NA	intron (NM_004004, intron 1 of 1)	intron (NM_004004, intron 1 of 1)	2473	NM_004004	2706		NM_004004	ENSG00000165474	GJB2	BAPS|CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein beta 2	protein-coding
74749	chr15	63213271	63213430	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	23744	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
75776	chr15	68783571	68784330	+	0	NA	intron (NM_006305, intron 4 of 6)	intron (NM_006305, intron 4 of 6)	17975	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
235416	chrX	45760271	45760730	+	0	NA	Intergenic	L2a|LINE|L2	-13376	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
58592	chr12	132464401	132465400	+	0	NA	Intergenic	Intergenic	-25251	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
28331	chr10	46545051	46545350	+	0	NA	3' UTR (NM_014696, exon 3 of 3)	3' UTR (NM_014696, exon 3 of 3)	11216	NM_014696	9721		NM_014696	ENSG00000204175	GPRIN2	GRIN2|KIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding
193586	chr6	30686101	30688050	+	0	NA	promoter-TSS (NM_133471).6	promoter-TSS (NM_133471).6	132	NM_001134870	170954		NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding
183045	chr5	73387171	73387330	+	0	NA	Intergenic	Intergenic	49344	NR_146627	105379033		NR_146627		LINC02230	-	long intergenic non-protein coding RNA 2230	ncRNA
163766	chr3	52375501	52376180	+	0	NA	intron (NM_015512, intron 45 of 77)	intron (NM_015512, intron 45 of 77)	34168	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
112387	chr19	6069801	6070930	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	40135	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
19189	chr1	172203101	172203500	+	0	NA	intron (NM_001350204, intron 15 of 20)	intron (NM_001350204, intron 15 of 20)	-58465	NR_103486	100628315		NR_038397		DNM3OS	DNM3-AS1|MIR199A2HG	DNM3 opposite strand/antisense RNA	ncRNA
186161	chr5	134183901	134184950	+	0	NA	Intergenic	Intergenic	-7392	NM_006930	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
6628	chr1	28916451	28916550	+	0	NA	intron (NM_001376013, intron 1 of 20)	AluSz|SINE|Alu	1924	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
14047	chr1	120760771	120761750	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	37321	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
191998	chr6	16316701	16317480	+	0	NA	intron (NM_000332, intron 8 of 8)	intron (NM_000332, intron 8 of 8)	78503	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
90883	chr17	2385571	2386630	+	0	NA	3' UTR (NM_020310, exon 6 of 6)	3' UTR (NM_020310, exon 6 of 6)	14960	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
193978	chr6	31730001	31731080	+	0	NA	promoter-TSS (NM_013974).2	promoter-TSS (NM_013974).2	-277	NM_013974	23564		NM_013974	ENSG00000213722	DDAH2	DDAH|DDAHII|G6a|HEL-S-277|NG30	DDAH family member 2, ADMA-independent	protein-coding
166273	chr3	112481121	112481700	+	0	NA	intron (NM_001085357, intron 1 of 3)	MSTD-int|LTR|ERVL-MaLR	18062	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
19387	chr1	174023571	174023950	+	0	NA	Intergenic	Intergenic	-1403	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
121458	chr19	47045251	47045650	+	0	NA	TTS (NM_017854)	TTS (NM_017854)	3174	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
128655	chr2	61443701	61444130	+	0	NA	intron (NM_014709, intron 1 of 79)	L1MC1|LINE|L1	-26538	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
107731	chr18	50193771	50194250	+	0	NA	intron (NM_001080467, intron 1 of 39)	CpG	1137	NM_001080467	4645		NM_001080467	ENSG00000167306	MYO5B	DIAR2|MVID1|PFIC10	myosin VB	protein-coding
52877	chr12	57189771	57189930	+	0	NA	intron (NM_002332, intron 42 of 88)	MER5A|DNA|hAT-Charlie	-4654	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
73918	chr15	50876601	50877400	+	0	NA	Intergenic	Intergenic	-31683	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
159311	chr3	13006401	13007230	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-19714	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
119391	chr19	40228401	40228980	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-2001	NM_024877	79935		NM_024877	ENSG00000105219	CCNP	CNTD2	cyclin P	protein-coding
143146	chr20	23978601	23979050	+	0	NA	Intergenic	Intergenic	8050	NM_178312	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
145805	chr20	45422651	45423780	+	0	NA	intron (NR_047691, intron 9 of 11)	AluSc8|SINE|Alu	-2295	NR_106870	102465487		NR_106870	ENSG00000273555	MIR6812	hsa-mir-6812	microRNA 6812	ncRNA
91858	chr17	7225751	7227250	+	0	NA	exon (NM_004422, exon 14 of 15)	exon (NM_004422, exon 14 of 15)	-3121	NR_029896	442898		NR_029896	ENSG00000199053	MIR324	MIRN324|hsa-mir-324|mir-324	microRNA 324	ncRNA
230233	chr9	127874421	127874880	+	0	NA	intron (NM_001318121, intron 1 of 6)	intron (NM_001318121, intron 1 of 6)	-1170	NM_001318122	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
81680	chr16	11140051	11140700	+	0	NA	intron (NM_015226, intron 21 of 22)	intron (NM_015226, intron 21 of 22)	115807	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
179047	chr4	165262401	165262600	+	0	NA	intron (NM_001161522, intron 3 of 13)	MamGypsy2-LTR|LTR|Gypsy	17523	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
112881	chr19	7617651	7618880	+	0	NA	TTS (NR_106850)	TTS (NR_106850)	826	NR_106850	102465475		NR_106850	ENSG00000273657	MIR6792	hsa-mir-6792	microRNA 6792	ncRNA
95159	chr17	35117801	35118600	+	0	NA	intron (NM_001142571, intron 2 of 9)	MER20|DNA|hAT-Charlie	1558	NM_133629	5892		NM_002878	ENSG00000185379	RAD51D	BROVCA4|R51H3|RAD51L3|TRAD	RAD51 paralog D	protein-coding
91151	chr17	3762251	3762550	+	0	NA	intron (NM_002208, intron 3 of 30)	intron (NM_002208, intron 3 of 30)	38497	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
128905	chr2	64203971	64204930	+	0	NA	non-coding (NR_033837, exon 1 of 6)	non-coding (NR_033837, exon 1 of 6)	1035	NR_033837	150992		NR_033837	ENSG00000230923	LINC00309	NCRNA00309	long intergenic non-protein coding RNA 309	ncRNA
163284	chr3	50320501	50322380	+	0	NA	5' UTR (NM_033158, exon 2 of 5)	5' UTR (NM_033158, exon 2 of 5)	1305	NM_003773	8692		NM_003773	ENSG00000068001	HYAL2	LUCA2	hyaluronidase 2	protein-coding
9637	chr1	52551421	52552500	+	0	NA	intron (NM_015269, intron 1 of 29)	intron (NM_015269, intron 1 of 29)	1130	NM_015269	23318		NM_015269	ENSG00000134744	TUT4	PAPD3|TENT3A|ZCCHC11	terminal uridylyl transferase 4	protein-coding
897	chr1	1674721	1675380	+	0	NA	intron (NM_001110781, intron 4 of 8)	intron (NM_001110781, intron 4 of 8)	-16046	NM_001787	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
149310	chr21	29002171	29003580	+	0	NA	Intergenic	CpG	-9998	NM_001320766	26046		NM_015565	ENSG00000198862	LTN1	C21orf10|C21orf98|RNF160|ZNF294	listerin E3 ubiquitin protein ligase 1	protein-coding
18098	chr1	160693671	160693980	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK-int|LTR|ERVK	17997	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
187094	chr5	140302891	140304330	+	0	NA	promoter-TSS (NM_002622)	promoter-TSS (NM_002622)	-509	NM_002622	5201		NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
180888	chr5	33997321	33997680	+	0	NA	intron (NM_014324, intron 4 of 4)	intron (NM_014324, intron 4 of 4)	10550	NM_203382	23600		NM_014324	ENSG00000242110	AMACR	AMACRD|CBAS4|P504S|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding
75256	chr15	64949221	64949700	+	0	NA	intron (NM_182703, intron 13 of 14)	intron (NM_182703, intron 13 of 14)	37558	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
13407	chr1	113971921	113972400	+	0	NA	TTS (NM_152696)	TTS (NM_152696)	-7231	NM_001286353	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
155660	chr22	39018421	39018950	+	0	NA	3' UTR (NM_014508, exon 4 of 4)	3' UTR (NM_014508, exon 4 of 4)	-2442	NM_001363781	140564		NM_152426	ENSG00000243811	APOBEC3D	A3D|A3DE|APOBEC3DE|APOBEC3E|ARP6	apolipoprotein B mRNA editing enzyme catalytic subunit 3D	protein-coding
89596	chr16	89286001	89286500	+	0	NA	TTS (NR_045839)	TTS (NR_045839)	-9878	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
66726	chr14	64464951	64466300	+	0	NA	intron (NM_004857, intron 1 of 1)	CpG	126	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
234810	chrX	24054001	24055580	+	0	NA	promoter-TSS (NM_001415)	promoter-TSS (NM_001415)	-166	NM_001415	1968		NM_001415	ENSG00000130741	EIF2S3	EIF2|EIF2G|EIF2gamma|MEHMO|MRXSBRK|eIF-2gA|eIF2gX	eukaryotic translation initiation factor 2 subunit gamma	protein-coding
141924	chr20	1185251	1186430	+	0	NA	promoter-TSS (NM_001304749)	promoter-TSS (NM_001304749)	80	NM_001304749	55321		NM_018354	ENSG00000125895	TMEM74B	C20orf46	transmembrane protein 74B	protein-coding
17429	chr1	156662651	156662950	+	0	NA	Intergenic	AluJb|SINE|Alu	14607	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
87474	chr16	71722521	71724750	+	0	NA	intron (NM_015020, intron 1 of 18)	CpG	1066	NM_015020	23035		NM_015020	ENSG00000040199	PHLPP2	PHLPPL|PPM3B	PH domain and leucine rich repeat protein phosphatase 2	protein-coding
122423	chr19	49460901	49462030	+	0	NA	intron (NM_001145396, intron 5 of 15)	MSR1|Satellite|Satellite	8240	NM_001145396	126133		NM_153329	ENSG00000161618	ALDH16A1	-	aldehyde dehydrogenase 16 family member A1	protein-coding
22551	chr1	222475871	222476030	+	0	NA	Intergenic	Intergenic	72154	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
53923	chr12	71684851	71685030	+	0	NA	Intergenic	MER90a|LTR|ERV1	-1142	NM_018279	55266		NM_018279	ENSG00000139291	TMEM19	-	transmembrane protein 19	protein-coding
155589	chr22	38758191	38759650	+	0	NA	Intergenic	Intergenic	-2922	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
163330	chr3	50375371	50376300	+	0	NA	exon (NM_001005505, exon 20 of 38)	exon (NM_001005505, exon 20 of 38)	10472	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
178751	chr4	153159021	153159300	+	0	NA	intron (NM_001375525, intron 1 of 10)	intron (NM_001375525, intron 1 of 10)	6082	NM_001375515	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
123114	chr19	51690221	51691280	+	0	NA	intron (NM_001316994, intron 1 of 8)	MIR3|SINE|MIR	1368	NM_001316994	147650		NM_207324	ENSG00000182310	SPACA6	LET7EH|LINC00085|NCRNA00085|SPACA6P	sperm acrosome associated 6	protein-coding
53892	chr12	70660871	70661230	+	0	NA	exon (NM_001207015, exon 11 of 13)	exon (NM_001207015, exon 11 of 13)	-23621	NM_001109754	5787		NM_002837	ENSG00000127329	PTPRB	HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP	protein tyrosine phosphatase receptor type B	protein-coding
100310	chr17	59826701	59827030	+	0	NA	intron (NM_030938, intron 10 of 11)	intron (NM_030938, intron 10 of 11)	-14401	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
118864	chr19	38653951	38654050	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	6351	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
108098	chr18	61943121	61943580	+	0	NA	Intergenic	L1MB7|LINE|L1	-50343	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
86084	chr16	57631751	57632050	+	0	NA	intron (NM_001145772, intron 1 of 14)	intron (NM_001145772, intron 1 of 14)	3270	NM_001370454	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
145661	chr20	44962701	44962900	+	0	NA	TTS (NR_038341)	TTS (NR_038341)	-2403	NM_006809	10953		NM_006809	ENSG00000025772	TOMM34	HTOM34P|TOM34|URCC3	translocase of outer mitochondrial membrane 34	protein-coding
7800	chr1	36250371	36251000	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluSz6|SINE|Alu	26242	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
220856	chr8	103371051	103372200	+	0	NA	promoter-TSS (NM_001256099)	promoter-TSS (NM_001256099)	87	NM_138455	115908		NM_138455	ENSG00000164932	CTHRC1	-	collagen triple helix repeat containing 1	protein-coding
142708	chr20	8305401	8305830	+	0	NA	intron (NM_015192, intron 2 of 31)	intron (NM_015192, intron 2 of 31)	56911	NR_046809	100874337		NR_046809	ENSG00000225479	PLCB1-IT1	-	PLCB1 intronic transcript 1	ncRNA
141199	chr2	239324551	239324850	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	19238	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
77854	chr15	88701551	88701850	+	0	NA	Intergenic	Intergenic	62684	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
43757	chr11	86176371	86176750	+	0	NA	Intergenic	Intergenic	-67824	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
169644	chr3	171436151	171436650	+	0	NA	intron (NM_001161560, intron 1 of 31)	MIR|SINE|MIR	24005	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
198682	chr6	108049841	108050480	+	0	NA	intron (NM_014028, intron 4 of 5)	L2a|LINE|L2	24581	NM_014028	28962		NM_014028	ENSG00000081087	OSTM1	GIPN|GL|HSPC019|OPTB5	osteoclastogenesis associated transmembrane protein 1	protein-coding
215118	chr7	155344571	155346030	+	0	NA	Intergenic	Intergenic	22633	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
51769	chr12	53323721	53326330	+	0	NA	Intergenic	CpG	-3415	NM_001173466	8086		NM_015665	ENSG00000094914	AAAS	AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003	aladin WD repeat nucleoporin	protein-coding
55761	chr12	108541101	108541700	+	0	NA	intron (NM_014706, intron 6 of 18)	AluSx1|SINE|Alu	19773	NM_014706	9733		NM_014706	ENSG00000075856	SART3	DSAP1|P100|RP11-13G14|TIP110|p110|p110(nrb)	spliceosome associated factor 3, U4/U6 recycling protein	protein-coding
185789	chr5	132414921	132415730	+	0	NA	intron (NR_161242, intron 1 of 3)	MER113|DNA|hAT-Charlie	4396	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
32862	chr10	110074021	110074580	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-65919	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
134834	chr2	148642851	148642950	+	0	NA	Intergenic	Intergenic	-1851	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
107609	chr18	48922701	48923380	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	19767	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
6206	chr1	27471521	27471980	+	0	NA	intron (NM_006990, intron 1 of 8)	L2|LINE|L2	18417	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
237607	chrX	123972051	123972400	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	10519	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
35736	chr11	2092721	2093780	+	0	NA	Intergenic	Intergenic	40959	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
182927	chr5	70772151	70772730	+	0	NA	intron (NR_146391, intron 3 of 10).3	AluY|SINE|Alu	4196	NR_160659	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
211103	chr7	102506221	102506680	+	0	NA	intron (NM_001367767, intron 5 of 20)	AluSx1|SINE|Alu	11327	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
141042	chr2	238235551	238236030	+	0	NA	Intergenic	L2|LINE|L2	4104	NR_026923	643387		NR_026923		TARDBPP3	-	TARDBP pseudogene 3	pseudo
191612	chr6	12118921	12119580	+	0	NA	intron (NM_002114, intron 3 of 8)	LTR45C|LTR|ERV1	106938	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
200334	chr6	133951401	133952300	+	0	NA	promoter-TSS (NM_001253676)	promoter-TSS (NM_001253676)	-320	NM_001253676	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
109407	chr19	678101	678300	+	0	NA	intron (NM_005860, intron 2 of 4)	intron (NM_005860, intron 2 of 4)	1808	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
132152	chr2	101742101	101742500	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	44035	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
239409	chrY	25973771	25974030	+	0	NA	Intergenic	L1PA6|LINE|L1	245410	NR_002176	474148		NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis expressed transcript, Y-linked 3B	ncRNA
26469	chr10	17628951	17629050	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-11626	NM_014241	9200		NM_014241	ENSG00000165996	HACD1	CAP|CMYP11|MYONP|PTPLA	3-hydroxyacyl-CoA dehydratase 1	protein-coding
223130	chr8	143486871	143487530	+	0	NA	intron (NM_015117, intron 4 of 11)	CpG	19048	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
152406	chr22	20559621	20559880	+	0	NA	intron (NM_001003891, intron 5 of 17)	L1MEi|LINE|L1	51703	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
200001	chr6	128518651	128519400	+	0	NA	intron (NM_001291981, intron 1 of 32).2	CpG	1574	NM_001291982	5796		NM_002844	ENSG00000152894	PTPRK	R-PTP-kappa	protein tyrosine phosphatase receptor type K	protein-coding
110500	chr19	2048571	2048830	+	0	NA	intron (NM_199054, intron 2 of 13)	intron (NM_199054, intron 2 of 13)	2544	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
237957	chrX	132958201	132958400	+	0	NA	exon (NM_001077188, exon 2 of 6)	exon (NM_001077188, exon 2 of 6)	3070	NM_147175	90161		NM_147174	ENSG00000171004	HS6ST2	MRXSPM	heparan sulfate 6-O-sulfotransferase 2	protein-coding
24386	chr1	241857251	241857350	+	0	NA	intron (NM_130398, intron 6 of 15)	intron (NM_130398, intron 6 of 15)	8569	NM_006027	9156		NM_003686	ENSG00000174371	EXO1	HEX1|hExoI	exonuclease 1	protein-coding
51538	chr12	52350771	52351030	+	0	NA	Intergenic	Intergenic	13722	NM_001300810	3891		NM_002283	ENSG00000135443	KRT85	ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5	keratin 85	protein-coding
107959	chr18	58311451	58311750	+	0	NA	intron (NM_001243960, intron 5 of 28)	intron (NM_001243960, intron 5 of 28)	90029	NM_001144966	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
123636	chr19	54629421	54629680	+	0	NA	promoter-TSS (NM_001081638).3	promoter-TSS (NM_001081638).3	-861	NM_001081639	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
108066	chr18	59895351	59895650	+	0	NA	Intergenic	Intergenic	-4496	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
56845	chr12	120248351	120249150	+	0	NA	intron (NM_001080855, intron 1 of 11)	MIR|SINE|MIR	1413	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
94518	chr17	29464721	29465130	+	0	NA	intron (NM_025142, intron 2 of 17)	AluSz|SINE|Alu	74000	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
40184	chr11	62903151	62903880	+	0	NA	Intergenic	Intergenic	17848	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
193301	chr6	30079121	30079580	+	0	NA	Intergenic	Intergenic	-3499	NM_025236	80352		NM_025236	ENSG00000204618	RNF39	FAP216|HZF|HZFW|LIRF	ring finger protein 39	protein-coding
139138	chr2	219003001	219004080	+	0	NA	intron (NM_194302, intron 33 of 34)	intron (NM_194302, intron 33 of 34)	1325	NR_046086	100129175		NR_046086	ENSG00000224090	LOC100129175	-	uncharacterized LOC100129175	ncRNA
98179	chr17	46100821	46101600	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	91572	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
161778	chr3	44991351	44991930	+	0	NA	intron (NM_015004, intron 3 of 7)	intron (NM_015004, intron 3 of 7)	15391	NR_023353	23016		NM_015004	ENSG00000075914	EXOSC7	EAP1|RRP42|Rrp42p|hRrp42p|p8	exosome component 7	protein-coding
78276	chr15	90872971	90873650	+	0	NA	intron (NM_001289824, intron 1 of 15)	intron (NM_001289824, intron 1 of 15)	456	NM_001382621	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
136797	chr2	181586571	181586930	+	0	NA	intron (NR_027690, intron 2 of 11)	intron (NR_027690, intron 2 of 11)	70355	NM_201548	375298		NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding
206799	chr7	36851351	36851450	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	68032	NR_031604	100302113		NR_031604	ENSG00000221325	MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA
193034	chr6	28474371	28474900	+	0	NA	Intergenic	Intergenic	-31144	NM_001012455	222696		NM_001012455	ENSG00000187987	ZSCAN23	ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1	zinc finger and SCAN domain containing 23	protein-coding
178939	chr4	158929951	158930450	+	0	NA	intron (NM_152543, intron 3 of 4)	(TC)n|Simple_repeat|Simple_repeat	105029	NM_152543	152940		NM_152543	ENSG00000164123	SPMIP2	C4orf45	sperm microtubule inner protein 2	protein-coding
169743	chr3	172515571	172515930	+	0	NA	intron (NR_033994, intron 1 of 3)	intron (NR_033994, intron 1 of 3)	7680	NM_001190943	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
84335	chr16	30186701	30187980	+	0	NA	intron (NM_007074, intron 5 of 10)	intron (NM_007074, intron 5 of 10)	-1344	NR_002454	606724		NR_002454		LOC606724	-	coronin 1A pseudogene	pseudo
179229	chr4	174039621	174039700	+	0	NA	Intergenic	AluYa5|SINE|Alu	142387	NR_146487	101928478		NR_146487	ENSG00000250708	LINC02269	-	long intergenic non-protein coding RNA 2269	ncRNA
31043	chr10	88901001	88901450	+	0	NA	intron (NM_020799, intron 1 of 10)	MLT1E1A|LTR|ERVL-MaLR	20980	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
166540	chr3	115040471	115041000	+	0	NA	intron (NM_015642, intron 1 of 9)	L2c|LINE|L2	30679	NM_001164343	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
90130	chr16	90169971	90170330	+	0	NA	intron (NR_126161, intron 3 of 3)	intron (NR_126161, intron 3 of 3)	67886	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
64752	chr14	34557871	34558230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1661	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
207052	chr7	39632671	39632830	+	0	NA	intron (NM_005402, intron 1 of 4)	AluJb|SINE|Alu	9178	NM_005402	5898		NM_005402	ENSG00000006451	RALA	HINCONS|RAL	RAS like proto-oncogene A	protein-coding
140407	chr2	233094001	233095280	+	0	NA	intron (NM_001017915, intron 2 of 26).2	MER5A1|DNA|hAT-Charlie	34298	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
217260	chr8	27315001	27315780	+	0	NA	intron (NM_173174, intron 3 of 35)	intron (NM_173174, intron 3 of 35)	3912	NM_173174	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
200280	chr6	132751421	132752080	+	0	NA	intron (NR_034173, intron 3 of 5)	intron (NR_034173, intron 3 of 5)	6154	NM_004665	8875		NM_004665	ENSG00000112303	VNN2	FOAP-4|GPI-80	vanin 2	protein-coding
62689	chr13	102726571	102726730	+	0	NA	Intergenic	Intergenic	-32129	NM_001010977	196541		NM_001010977	ENSG00000139780	METTL21C	C13orf39	methyltransferase 21C, AARS1 lysine	protein-coding
216975	chr8	23066371	23066930	+	0	NA	intron (NM_147187, intron 1 of 9)	AluY|SINE|Alu	-1579	NR_038873	286059		NR_038873	ENSG00000246130	TNFRSF10B-AS1	DR5-AS	TNFRSF10B antisense RNA 1	pseudo
96793	chr17	41835651	41837050	+	0	NA	promoter-TSS (NR_033464)	promoter-TSS (NR_033464)	-79	NR_033465	115024		NM_052935	ENSG00000141698	NT5C3B	CNIIIL|NT5C3L|cN-IIIB	5'-nucleotidase, cytosolic IIIB	protein-coding
155948	chr22	39685201	39686250	+	0	NA	intron (NM_001003406, intron 35 of 35)	CpG	114972	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
2767	chr1	10697901	10698100	+	0	NA	intron (NM_017766, intron 3 of 15)	CpG	98646	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
34281	chr10	131911751	131912050	+	0	NA	5' UTR (NM_001291310, exon 3 of 10)	5' UTR (NM_001291310, exon 3 of 10)	10892	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
15584	chr1	150576121	150576450	+	0	NA	3' UTR (NM_182763, exon 2 of 2)	3' UTR (NM_182763, exon 2 of 2)	-1733	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
185617	chr5	131466151	131466700	+	0	NA	intron (NM_016340, intron 17 of 27)	intron (NM_016340, intron 17 of 27)	168804	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
229792	chr9	125255921	125256330	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-5701	NM_001354294	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
68287	chr14	77124621	77126200	+	0	NA	Intergenic	CpG	15334	NM_001364172	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
104535	chr17	81253121	81254280	+	0	NA	intron (NM_001037984, intron 11 of 15)	intron (NM_001037984, intron 11 of 15)	13786	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
78083	chr15	90228551	90228650	+	0	NA	exon (NM_001324030, exon 14 of 14)	exon (NM_001324030, exon 14 of 14)	5341	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
94382	chr17	28944871	28945230	+	0	NA	TTS (NR_110803)	TTS (NR_110803)	6468	NM_020889	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
9919	chr1	54460401	54461200	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-54406	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
120016	chr19	41939871	41941050	+	0	NA	Intergenic	CpG	11640	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
218492	chr8	52150471	52150730	+	0	NA	intron (NM_001352830, intron 15 of 25)	intron (NM_001352830, intron 15 of 25)	-43762	NR_134310	101929341		NR_134310	ENSG00000253551	LOC101929341	-	uncharacterized LOC101929341	ncRNA
35532	chr11	1571501	1573100	+	0	NA	promoter-TSS (NR_021489).3	promoter-TSS (NR_021489).3	-29	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
214964	chr7	151874701	151876600	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-1392	NR_038926	100505483		NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	ncRNA
20409	chr1	198189571	198189730	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	32652	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
97800	chr17	44774301	44775200	+	0	NA	intron (NM_001318933, intron 14 of 26)	intron (NM_001318933, intron 14 of 26)	15762	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
24718	chr1	247406821	247407660	+	0	NA	Intergenic	Intergenic	-8933	NM_001243133	114548		NM_004895	ENSG00000162711	NLRP3	AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1	NLR family pyrin domain containing 3	protein-coding
52169	chr12	54293951	54294980	+	0	NA	intron (NM_006163, intron 2 of 2)	intron (NM_006163, intron 2 of 2)	1314	NM_006163	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
131980	chr2	100274021	100274280	+	0	NA	3' UTR (NM_198461, exon 12 of 12)	3' UTR (NM_198461, exon 12 of 12)	48351	NM_001371783	164832		NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding
72332	chr15	31303021	31304200	+	0	NA	Intergenic	Intergenic	-23225	NM_001302461	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
168666	chr3	150542901	150543100	+	0	NA	3' UTR (NM_014445, exon 3 of 3)	3' UTR (NM_014445, exon 3 of 3)	3496	NM_014445	27230		NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding
73852	chr15	50107351	50108030	+	0	NA	intron (NM_024837, intron 1 of 27)	intron (NM_024837, intron 1 of 27)	5689	NR_073598	79895		NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
91912	chr17	7311771	7312400	+	0	NA	TTS (NM_004489)	TTS (NM_004489)	3275	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
38125	chr11	35245121	35245380	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	82300	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
109044	chr18	79752351	79753150	+	0	NA	intron (NM_004715, intron 12 of 12)	intron (NM_004715, intron 12 of 12)	71320	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
126194	chr2	26772171	26773300	+	0	NA	intron (NM_017877, intron 1 of 5)	Plat_L3|LINE|CR1	8451	NM_017877	54978		NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
224661	chr9	21029421	21029780	+	0	NA	intron (NM_001321903, intron 1 of 8)	MER47B|DNA|TcMar-Tigger	2040	NM_001321883	401494		NM_001010915	ENSG00000188921	HACD4	PTPLAD2	3-hydroxyacyl-CoA dehydratase 4	protein-coding
50032	chr12	43776521	43776950	+	0	NA	intron (NM_001145256, intron 6 of 11)	MIRb|SINE|MIR	17784	NM_016123	51135		NM_016123	ENSG00000198001	IRAK4	IMD67|IPD1|IRAK-4|NY-REN-64|REN64	interleukin 1 receptor associated kinase 4	protein-coding
195195	chr6	36094621	36095600	+	0	NA	intron (NM_001315, intron 8 of 11)	intron (NM_001315, intron 8 of 11)	-35403	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
29274	chr10	69184401	69185150	+	0	NA	intron (NM_001301683, intron 2 of 15)	intron (NM_001301683, intron 2 of 15)	4541	NM_001323587	6832		NM_003171	ENSG00000156502	SUPV3L1	SUV3	Suv3 like RNA helicase	protein-coding
97461	chr17	43702551	43702930	+	0	NA	Intergenic	Intergenic	-40818	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
14451	chr1	144408451	144409050	+	0	NA	Intergenic	Intergenic	-3826	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
4482	chr1	21508901	21509680	+	0	NA	promoter-TSS (NM_000478)	promoter-TSS (NM_000478)	-133	NM_001127501	249		NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|HPPA|HPPC|HPPI|HPPO|TNALP|TNAP|TNS-ALP|TNSALP	alkaline phosphatase, biomineralization associated	protein-coding
227103	chr9	85743401	85744280	+	0	NA	Intergenic	Intergenic	-1811	NM_015239	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
190713	chr6	270901	271430	+	0	NA	Intergenic	L1MC5|LINE|L1	-20892	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
138910	chr2	218073701	218074150	+	0	NA	intron (NM_198483, intron 8 of 12)	intron (NM_198483, intron 8 of 12)	4910	NM_198483	285180		NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding
134050	chr2	131155521	131155930	+	0	NA	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	50878	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
167009	chr3	126063571	126064350	+	0	NA	intron (NM_001164475, intron 1 of 9)	LTR53-int|LTR|ERVL	-6835	NM_001008487	54946		NM_017836	ENSG00000114544	SLC41A3	SLC41A1-L2	solute carrier family 41 member 3	protein-coding
238078	chrX	136192201	136192400	+	0	NA	intron (NM_001369330, intron 2 of 6)	intron (NM_001369330, intron 2 of 6)	-4489	NM_001159701	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
26593	chr10	22228771	22229790	+	0	NA	Intergenic	CpG	-19297	NM_001199938	340900		NM_001199938	ENSG00000223601	EBLN1	EBLN-1	endogenous Bornavirus like nucleoprotein 1	protein-coding
182174	chr5	56691221	56691680	+	0	NA	Intergenic	Intergenic	81421	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
209247	chr7	75879801	75880850	+	0	NA	intron (NM_001346186, intron 2 of 5)	Tigger19b|DNA|TcMar-Tigger	1291	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
139249	chr2	219385351	219386030	+	0	NA	exon (NM_001319117, exon 7 of 14)	exon (NM_001319117, exon 7 of 14)	1672	NM_001319118	23549		NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
55296	chr12	103455351	103455950	+	0	NA	intron (NR_103526, intron 2 of 10)	intron (NR_103526, intron 2 of 10)	40318	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
33027	chr10	110774051	110775030	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	96364	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
96438	chr17	40191471	40192250	+	0	NA	intron (NM_001303534, intron 10 of 14)	MER91A|DNA|hAT-Tip100	-1737	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
154459	chr22	35533421	35534050	+	0	NA	intron (NM_001376515, intron 1 of 2)	intron (NM_001376515, intron 1 of 2)	929	NM_001376515	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
171366	chr3	196075751	196076850	+	0	NA	intron (NM_003234, intron 2 of 18)	intron (NM_003234, intron 2 of 18)	5790	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
21916	chr1	207833451	207834580	+	0	NA	Intergenic	Intergenic	-11312	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
63413	chr13	114083171	114083730	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-5495	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
37009	chr11	12007271	12007630	+	0	NA	intron (NM_001018057, intron 1 of 6)	intron (NM_001018057, intron 1 of 6)	1189	NM_001018057	27122		NM_013253	ENSG00000050165	DKK3	CRRL|REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding
85380	chr16	50280971	50281130	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	-11566	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
226944	chr9	79632071	79632480	+	0	NA	intron (NM_001351547, intron 5 of 18)	LTR16E2|LTR|ERVL	59098	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
224805	chr9	23452651	23452750	+	0	NA	Intergenic	LTR12C|LTR|ERV1	219699	NR_121602	101929563		NR_121602	ENSG00000283982	LOC101929563	-	uncharacterized LOC101929563	ncRNA
209323	chr7	76165271	76165680	+	0	NA	Intergenic	Intergenic	-36421	NM_001291831	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
140044	chr2	231256051	231256230	+	0	NA	intron (NR_148040, intron 9 of 21)	CpG	57509	NM_001352755	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
1821	chr1	6242101	6242800	+	0	NA	Intergenic	CpG	-1729	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
201332	chr6	144460001	144460790	+	0	NA	intron (NM_007124, intron 20 of 73)	intron (NM_007124, intron 20 of 73)	54740	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
190614	chr5	181183001	181183700	+	0	NA	Intergenic	L1M1|LINE|L1	8558	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
54932	chr12	96207201	96207780	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	13115	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
193850	chr6	31537651	31538150	+	0	NA	intron (NR_037852, intron 2 of 8).3	AluSz|SINE|Alu	-1451	NR_003140	692233		NR_003140	ENSG00000201785	SNORD117	U83	small nucleolar RNA, C/D box 117	snoRNA
215220	chr7	156096821	156097080	+	0	NA	Intergenic	L2a|LINE|L2	134393	NR_168379	389602		NM_001291913	ENSG00000204876	LOC389602	-	uncharacterized LOC389602	ncRNA
179172	chr4	170089851	170090150	+	0	NA	promoter-TSS (NM_016228)	promoter-TSS (NM_016228)	-44	NM_016228	51166		NM_016228	ENSG00000109576	AADAT	KAT2|KATII|KYAT2	aminoadipate aminotransferase	protein-coding
221260	chr8	122784901	122785950	+	0	NA	intron (NM_014943, intron 1 of 3)	MLT1L|LTR|ERVL-MaLR	3770	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
229596	chr9	123385271	123386130	+	0	NA	intron (NM_020946, intron 20 of 21)	MIRb|SINE|MIR	16903	NR_030332	693186		NR_030332	ENSG00000207991	MIR601	MIRN601|hsa-mir-601	microRNA 601	ncRNA
162107	chr3	46910501	46910800	+	0	NA	Intergenic	Intergenic	28401	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
64556	chr14	24613371	24613730	+	0	NA	Intergenic	Intergenic	-3865	NM_033423	2999		NM_033423	ENSG00000100450	GZMH	CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2	granzyme H	protein-coding
216641	chr8	22115401	22115730	+	0	NA	3' UTR (NM_005144, exon 19 of 19)	3' UTR (NM_005144, exon 19 of 19)	-6146	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
139027	chr2	218402871	218403530	+	0	NA	TTS (NR_029500)	TTS (NR_029500)	554	NR_029500	407017		NR_029500	ENSG00000199121	MIR26B	MIRN26B|hsa-mir-26b|miR-26b	microRNA 26b	ncRNA
209029	chr7	74459201	74459600	+	0	NA	intron (NM_001199207, intron 1 of 26)	AluSq2|SINE|Alu	5494	NM_005685	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
210473	chr7	100152301	100152880	+	0	NA	intron (NR_134530, intron 2 of 3)	intron (NR_134530, intron 2 of 3)	3612	NR_134530								
155355	chr22	38278721	38279180	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-5940	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
538	chr1	1234001	1234680	+	0	NA	3' UTR (NM_080605, exon 1 of 1)	3' UTR (NM_080605, exon 1 of 1)	2103	NM_080605	126792		NM_080605	ENSG00000176022	B3GALT6	ALGAZ|EDSP2|EDSSPD2|SEMDJL1|beta3GalT6	beta-1,3-galactosyltransferase 6	protein-coding
181225	chr5	39182801	39183030	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	36648	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
179404	chr4	183840301	183840530	+	0	NA	intron (NR_132761, intron 1 of 2)	intron (NR_132761, intron 1 of 2)	42393	NR_132761	56977		NM_020225	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
133717	chr2	127375251	127375550	+	0	NA	intron (NM_001371911, intron 1 of 16)	intron (NM_001371911, intron 1 of 16)	12575	NM_001371910	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
117458	chr19	19689201	19689550	+	0	NA	Intergenic	AluSx1|SINE|Alu	20536	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
68549	chr14	89352401	89352600	+	0	NA	intron (NM_001085471, intron 2 of 6)	intron (NM_001085471, intron 2 of 6)	64733	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
140922	chr2	237717021	237717880	+	0	NA	intron (NM_001137550, intron 3 of 23)	intron (NM_001137550, intron 3 of 23)	25245	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
6931	chr1	31699301	31700130	+	0	NA	intron (NM_001856, intron 4 of 70)	intron (NM_001856, intron 4 of 70)	4302	NM_001856	1307		NM_001856	ENSG00000084636	COL16A1	447AA|FP1572	collagen type XVI alpha 1 chain	protein-coding
203719	chr7	1069551	1069650	+	0	NA	intron (NM_032350, intron 2 of 4)	SVA_F|Retroposon|SVA	14230	NM_001303474	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
136779	chr2	181463351	181464300	+	0	NA	intron (NM_000885, intron 2 of 27)	L2b|LINE|L2	6439	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
230421	chr9	128131601	128132000	+	0	NA	Intergenic	Intergenic	3271	NR_024425	389791		NM_001013652	ENSG00000232850	PTGES2-AS1	-	PTGES2 antisense RNA 1 (head to head)	ncRNA
107812	chr18	51199121	51199550	+	0	NA	Intergenic	AluJb|SINE|Alu	-1654	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
171398	chr3	196191871	196194200	+	0	NA	Intergenic	Intergenic	18365	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
89981	chr16	89839871	89840250	+	0	NA	intron (NM_032451, intron 1 of 14)	intron (NM_032451, intron 1 of 14)	11585	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
206777	chr7	36720851	36721780	+	0	NA	intron (NM_001177506, intron 1 of 21)	LTR16|LTR|ERVL	3179	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
8291	chr1	40040201	40042530	+	0	NA	intron (NM_001350481, intron 1 of 12)	intron (NM_001350481, intron 1 of 12)	339	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
191809	chr6	14480451	14480550	+	0	NA	Intergenic	L1PA3|LINE|L1	-195046	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
222307	chr8	133488601	133489330	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	82922	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
37663	chr11	22831351	22831730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1739	NM_001320342	258010		NM_148893	ENSG00000198168	SVIP	-	small VCP interacting protein	protein-coding
62381	chr13	99256401	99257230	+	0	NA	intron (NM_005292, intron 1 of 2)	intron (NM_005292, intron 1 of 2)	1613	NM_001098200	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
226022	chr9	42129121	42129450	+	0	NA	5' UTR (NM_001201380, exon 1 of 24)	5' UTR (NM_001201380, exon 1 of 24)	141	NM_001201380	728577		NM_001201380	ENSG00000154529	CNTNAP3B	-	contactin associated protein family member 3B	protein-coding
82497	chr16	17375901	17376200	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	94910	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
229568	chr9	123266621	123266880	+	0	NA	intron (NM_018387, intron 1 of 18)	intron (NM_018387, intron 1 of 18)	1836	NR_033234	55342		NM_018387	ENSG00000165209	STRBP	HEL162|ILF3L|SPNR|p74	spermatid perinuclear RNA binding protein	protein-coding
92751	chr17	14428001	14429200	+	0	NA	Intergenic	Intergenic	124860	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
170080	chr3	182975021	182975780	+	0	NA	intron (NM_001308101, intron 1 of 6)	AluY|SINE|Alu	5138	NM_020640	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
61816	chr13	75695771	75696130	+	0	NA	intron (NM_001306080, intron 1 of 30)	intron (NM_001306080, intron 1 of 30)	59620	NM_001306080	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
235541	chrX	47236821	47237080	+	0	NA	intron (NM_001371072, intron 1 of 20)	Kanga1|DNA|TcMar-Tc2	3941	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
90844	chr17	2350521	2350930	+	0	NA	intron (NM_001346700, intron 2 of 22)	L2|LINE|L2	13224	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
177252	chr4	109278651	109278750	+	0	NA	intron (NM_198721, intron 3 of 36)	intron (NM_198721, intron 3 of 36)	23958	NM_032518	84570		NM_032518	ENSG00000188517	COL25A1	AMY|CFEOM5|CLAC|CLAC-P|CLACP	collagen type XXV alpha 1 chain	protein-coding
190136	chr5	178074721	178074980	+	0	NA	Intergenic	LTR1|LTR|ERV1	-38682	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
133560	chr2	121309771	121310130	+	0	NA	Intergenic	(AAAAC)n|Simple_repeat|Simple_repeat	-24748	NM_014553	29842		NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
128360	chr2	54997651	54998350	+	0	NA	intron (NM_153828, intron 1 of 6)	MER44A|DNA|TcMar-Tigger	12272	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
83472	chr16	27373951	27374250	+	0	NA	Intergenic	AluJb|SINE|Alu	-28074	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
141177	chr2	239281501	239282230	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-23597	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
168698	chr3	150621171	150621700	+	0	NA	intron (NM_016275, intron 1 of 5)	intron (NM_016275, intron 1 of 5)	18114	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
109922	chr19	1299071	1299230	+	0	NA	intron (NM_001405, intron 3 of 3)	AluSx1|SINE|Alu	13277	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
161495	chr3	42526421	42528080	+	0	NA	intron (NM_001251883, intron 3 of 9)	intron (NM_001251883, intron 3 of 9)	5356	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
89792	chr16	89490101	89492050	+	0	NA	promoter-TSS (NM_001256183)	promoter-TSS (NM_001256183)	-514	NM_001256183	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
98867	chr17	48512371	48512530	+	0	NA	Intergenic	AluY|SINE|Alu	18561	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
66522	chr14	61745321	61745580	+	0	NA	intron (NM_181054, intron 13 of 13)	intron (NM_181054, intron 13 of 13)	3639	NR_045406	100750247		NR_045406		HIF1A-AS2	3'aHIF-1A|aHIF	HIF1A antisense RNA 2	ncRNA
122231	chr19	48990571	48990730	+	0	NA	intron (NR_027763, intron 1 of 14)	MIR|SINE|MIR	2659	NR_027763	2997		NM_002103	ENSG00000104812	GYS1	GSY|GYS	glycogen synthase 1	protein-coding
108232	chr18	63201071	63201580	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	118444	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
182402	chr5	61334921	61335530	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	2967	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
157620	chr22	46057951	46058730	+	0	NA	non-coding (NR_027034, exon 3 of 3)	non-coding (NR_027034, exon 3 of 3)	-4115	NR_165243	55267		NR_165243		PRR34	C22orf26	PRR34 long non-coding RNA	ncRNA
147621	chr20	62141051	62142030	+	0	NA	intron (NM_002792, intron 1 of 6)	intron (NM_002792, intron 1 of 6)	1854	NM_002792	5688		NM_002792	ENSG00000101182	PSMA7	C6|HEL-S-276|HSPC|RC6-1|XAPC7	proteasome 20S subunit alpha 7	protein-coding
239224	chrY	12939221	12939580	+	0	NA	Intergenic	AluSz|SINE|Alu	33695	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
101933	chr17	74477451	74477950	+	0	NA	intron (NM_007261, intron 4 of 6)	intron (NM_007261, intron 4 of 6)	11066	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
203687	chr7	1025071	1025800	+	0	NA	non-coding (NR_134538, exon 2 of 2)	non-coding (NR_134538, exon 2 of 2)	-2409	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
238934	chrX	154750251	154751650	+	0	NA	intron (NR_104114, intron 1 of 8)	CpG	127	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
133689	chr2	127104971	127105430	+	0	NA	intron (NM_139345, intron 1 of 15)	intron (NM_139345, intron 1 of 15)	1954	NM_001320641	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
167303	chr3	128682571	128682800	+	0	NA	Intergenic	AluSx4|SINE|Alu	-31867	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
170201	chr3	183904371	183904600	+	0	NA	Intergenic	Intergenic	17685	NR_039650	100616127		NR_039650	ENSG00000263932	MIR4448	-	microRNA 4448	ncRNA
119846	chr19	41396821	41398230	+	0	NA	promoter-TSS (NM_000709)	promoter-TSS (NM_000709)	-166	NM_020158	56915		NM_020158	ENSG00000077348	EXOSC5	CABAC|RRP41B|RRP46|Rrp46p|hRrp46p|p12B	exosome component 5	protein-coding
33199	chr10	113799671	113800050	+	0	NA	Intergenic	Intergenic	-21806	NR_039703	100616162		NR_039703	ENSG00000283656	MIR4483	-	microRNA 4483	ncRNA
44701	chr11	111539251	111539800	+	0	NA	promoter-TSS (NM_001258391)	promoter-TSS (NM_001258391)	-755	NM_001318799	143903		NM_178834	ENSG00000204381	LAYN	-	layilin	protein-coding
51947	chr12	53744751	53745150	+	0	NA	Intergenic	Intergenic	6885	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
57894	chr12	123447301	123447500	+	0	NA	Intergenic	AluSp|SINE|Alu	-10667	NM_145058	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
126929	chr2	33270701	33270900	+	0	NA	intron (NM_001166265, intron 11 of 29)	intron (NM_001166265, intron 11 of 29)	136204	NM_001166264	4052		NM_000627	ENSG00000049323	LTBP1	ARCL2E	latent transforming growth factor beta binding protein 1	protein-coding
49764	chr12	31797051	31797750	+	0	NA	Intergenic	Intergenic	-5102	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
222665	chr8	141194301	141194580	+	0	NA	non-coding (NR_148197, exon 24 of 24)	non-coding (NR_148197, exon 24 of 24)	34134	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
174209	chr4	37668971	37669330	+	0	NA	intron (NM_001085400, intron 1 of 6)	SVA_D|Retroposon|SVA	17226	NM_001085399	768211		NM_001085399	ENSG00000181826	RELL1	-	RELT like 1	protein-coding
33397	chr10	118046221	118047280	+	0	NA	promoter-TSS (NR_026941)	promoter-TSS (NR_026941)	-71	NR_026939	255082		NM_178816	ENSG00000177640	CASC2	C10orf5	cancer susceptibility 2	ncRNA
585	chr1	1285371	1285730	+	0	NA	intron (NR_037668, intron 5 of 16)	intron (NR_037668, intron 5 of 16)	5114	NM_001130413	6339		NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	sodium channel epithelial 1 subunit delta	protein-coding
157174	chr22	43004251	43004680	+	0	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	10684	NM_001184970	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
155967	chr22	39892271	39892430	+	0	NA	intron (NM_152512, intron 1 of 6)	MER46C|DNA|TcMar-Tigger	1410	NM_152512	150350		NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
196672	chr6	44469751	44470430	+	0	NA	Intergenic	Intergenic	34449	NR_039785	100616352		NR_039785	ENSG00000266619	MIR4642	-	microRNA 4642	ncRNA
63849	chr14	21524921	21525280	+	0	NA	exon (NM_001364564, exon 2 of 2)	exon (NM_001364564, exon 2 of 2)	1246	NR_111967	6297		NM_005407	ENSG00000165821	SALL2	COLB|HSAL2|Sal-2|ZNF795|p150(Sal2)	spalt like transcription factor 2	protein-coding
83734	chr16	28608521	28608980	+	0	NA	exon (NM_001055, exon 2 of 8)	exon (NM_001055, exon 2 of 8)	578	NM_177530	6817		NM_001055	ENSG00000196502	SULT1A1	HAST1/HAST2|P-PST|P-PST 1|PST|ST1A1|ST1A3|STP|STP1|TSPST1|ts-PST	sulfotransferase family 1A member 1	protein-coding
87536	chr16	71905801	71906600	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluSc8|SINE|Alu	10669	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
163475	chr3	50636101	50636500	+	0	NA	intron (NM_001243926, intron 4 of 12)	MIR|SINE|MIR	19149	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
151145	chr21	44909551	44910130	+	0	NA	intron (NM_001127491, intron 3 of 15)	intron (NM_001127491, intron 3 of 15)	11059	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
80341	chr16	2471071	2472250	+	0	NA	5' UTR (NM_006181, exon 1 of 6)	5' UTR (NM_006181, exon 1 of 6)	363	NM_006181	4917		NM_006181	ENSG00000162068	NTN3	NTN2L	netrin 3	protein-coding
179096	chr4	168479421	168480700	+	0	NA	intron (NM_001378071, intron 1 of 5)	intron (NM_001378071, intron 1 of 5)	432	NM_001345927	91351		NM_001012967	ENSG00000181381	DDX60L	-	DExD/H-box 60 like	protein-coding
86043	chr16	57551051	57551550	+	0	NA	intron (NM_153837, intron 1 of 11)	Tigger1|DNA|TcMar-Tigger	8657	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
55485	chr12	104725271	104725630	+	0	NA	intron (NM_018413, intron 2 of 2)	MIR3|SINE|MIR	133817	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
143197	chr20	24933201	24933400	+	0	NA	Intergenic	Intergenic	-15969	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
56510	chr12	116361121	116361580	+	0	NA	Intergenic	Intergenic	66968	NR_039683	100616309		NR_039683	ENSG00000264037	MIR4472-2	-	microRNA 4472-2	ncRNA
139276	chr2	219486321	219486730	+	0	NA	intron (NM_005876, intron 31 of 40)	GA-rich|Low_complexity|Low_complexity	-9830	NM_001286811	100996693		NM_001286811	ENSG00000286095	SPEGNB	-	SPEG neighbor	protein-coding
214132	chr7	144290621	144291230	+	0	NA	intron (NR_126022, intron 3 of 4).3	intron (NR_126022, intron 3 of 4).3	-4922	NR_033942	728377		NR_033942		ARHGEF34P	-	Rho guanine nucleotide exchange factor 34, pseudogene	pseudo
27585	chr10	32377221	32378190	+	0	NA	intron (NR_168507, intron 1 of 1)	intron (NR_168507, intron 1 of 1)	1064	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
128736	chr2	61885951	61886300	+	0	NA	intron (NM_006430, intron 1 of 13)	A-rich|Low_complexity|Low_complexity	-2266	NM_001371765	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
93567	chr17	19092221	19092900	+	0	NA	intron (NR_164158, intron 1 of 3)	intron (NR_164158, intron 1 of 3)	3099	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
211915	chr7	112422051	112422750	+	0	NA	promoter-TSS (NM_001197080)	promoter-TSS (NM_001197080)	-744	NM_001197080	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
1571	chr1	3538501	3539130	+	0	NA	intron (NM_001409, intron 4 of 36)	intron (NM_001409, intron 4 of 36)	21975	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
16217	chr1	153904671	153905280	+	0	NA	intron (NM_020699, intron 1 of 10)	AluSx1|SINE|Alu	17997	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
32372	chr10	102401371	102402330	+	0	NA	TTS (NR_073110)	TTS (NR_073110)	6145	NM_001261403	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
198033	chr6	90162871	90163290	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	133763	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
173378	chr4	7937251	7938230	+	0	NA	intron (NM_001371091, intron 1 of 17)	AluSx1|SINE|Alu	-1261	NM_203423	389199		NM_203423	ENSG00000228919	LOC389199	-	uncharacterized LOC389199	ncRNA
20521	chr1	198679501	198680100	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	40760	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
92271	chr17	8059921	8060580	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	21191	NM_001039131	247		NM_001141	ENSG00000179593	ALOX15B	15-LOX-2	arachidonate 15-lipoxygenase type B	protein-coding
193782	chr6	31389121	31389750	+	0	NA	Intergenic	Intergenic	9073	NR_148223	101929072		NR_148222		MICA-AS1	-	MICA antisense RNA 1	ncRNA
218985	chr8	61810071	61810230	+	0	NA	Intergenic	Intergenic	-79689	NR_149085	111082988		NR_149085	ENSG00000254120	LINC02155	-	long intergenic non-protein coding RNA 2155	ncRNA
234429	chrX	16840271	16840430	+	0	NA	intron (NM_018360, intron 9 of 9)	MER5A|DNA|hAT-Charlie	29513	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
104427	chr17	81072721	81072980	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	-10139	NM_001385150	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
163562	chr3	51799921	51800280	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-17503	NR_038215	100506840		NR_038213	ENSG00000293437	IQCF4P	IQCF4	IQ motif containing F4, pseudogene	pseudo
222801	chr8	142445951	142446250	+	0	NA	Intergenic	Intergenic	-3549	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
208802	chr7	73612901	73613180	+	0	NA	intron (NR_134541, intron 2 of 15)	intron (NR_134541, intron 2 of 15)	11482	NM_032953	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
212854	chr7	130847501	130847900	+	0	NA	Intergenic	AluJr|SINE|Alu	29110	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
32901	chr10	110168471	110169180	+	0	NA	Intergenic	Intergenic	-16845	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
75572	chr15	67067301	67067600	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	1848	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
58796	chr12	132769801	132770650	+	0	NA	3' UTR (NM_005895, exon 24 of 24)	3' UTR (NM_005895, exon 24 of 24)	-8393	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
166718	chr3	121529471	121529630	+	0	NA	intron (NM_199420, intron 7 of 29)	intron (NM_199420, intron 7 of 29)	16438	NM_199420	10721		NM_006596	ENSG00000051341	POLQ	PRO0327	DNA polymerase theta	protein-coding
140450	chr2	233157651	233157950	+	0	NA	intron (NM_001017915, intron 9 of 26).2	HAL1|LINE|L1	-93771	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
20670	chr1	200337521	200337980	+	0	NA	Intergenic	MIR|SINE|MIR	36042	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
173651	chr4	13541921	13542950	+	0	NA	exon (NM_001189, exon 2 of 2)	exon (NM_001189, exon 2 of 2)	2073	NM_001189	579		NM_001189	ENSG00000109705	NKX3-2	BAPX1|NKX3.2|NKX3B|SMMD	NK3 homeobox 2	protein-coding
47975	chr12	6888921	6889180	+	0	NA	intron (NR_135083, intron 1 of 3)	AluSz|SINE|Alu	308	NR_135083	105369632		NR_135083	ENSG00000111671	LOC105369632	-	uncharacterized LOC105369632	ncRNA
168912	chr3	152337271	152337680	+	0	NA	intron (NM_001376837, intron 2 of 9)	AluSz|SINE|Alu	3515	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
164052	chr3	53750171	53750730	+	0	NA	intron (NM_001128839, intron 27 of 45)	intron (NM_001128839, intron 27 of 45)	95969	NM_018397	55349		NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
40143	chr11	62846451	62846750	+	0	NA	Intergenic	AluSp|SINE|Alu	-4791	NM_001369451	54663		NM_018093	ENSG00000133316	WDR74	Nsa1	WD repeat domain 74	protein-coding
91657	chr17	5513401	5514230	+	0	NA	TTS (NM_033007)	TTS (NM_033007)	-12809	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
78552	chr15	92985871	92986030	+	0	NA	intron (NM_001271, intron 26 of 38)	intron (NM_001271, intron 26 of 38)	81551	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
165208	chr3	72846171	72846330	+	0	NA	intron (NM_018130, intron 1 of 10)	L2c|LINE|L2	2195	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
52678	chr12	56425121	56425480	+	0	NA	intron (NR_138471, intron 13 of 28)	L2c|LINE|L2	24126	NM_001330295	8914		NM_003920	ENSG00000111602	TIMELESS	FASPS4|TIM|TIM1|hTIM	timeless circadian regulator	protein-coding
9713	chr1	53124371	53124730	+	0	NA	intron (NM_001287595, intron 2 of 10)	intron (NM_001287595, intron 2 of 10)	18088	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
119879	chr19	41521171	41522830	+	0	NA	Intergenic	Intergenic	-13498	NR_110724	101927931		NR_110724	ENSG00000270164	LINC01480	-	long intergenic non-protein coding RNA 1480	ncRNA
74967	chr15	63829071	63829530	+	0	NA	intron (NM_003922, intron 1 of 77)	AluJo|SINE|Alu	4648	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
31084	chr10	89216921	89217300	+	0	NA	intron (NM_001288979, intron 6 of 7)	intron (NM_001288979, intron 6 of 7)	-9793	NM_003956	9023		NM_003956	ENSG00000138135	CH25H	C25H	cholesterol 25-hydroxylase	protein-coding
168283	chr3	141492851	141493850	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	6323	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
173901	chr4	25144971	25145130	+	0	NA	exon (NM_016955, exon 7 of 11)	exon (NM_016955, exon 7 of 11)	15399	NM_016955	51091		NM_016955	ENSG00000109618	SEPSECS	LP|PCH2D|SLA|SLA-p35|SLA/LP|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding
161982	chr3	46353001	46353600	+	0	NA	promoter-TSS (NM_001123041)	promoter-TSS (NM_001123041)	-444	NM_001123041	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
235325	chrX	43557821	43558150	+	0	NA	Intergenic	Intergenic	-96922	NM_001270458	4128		NM_000240	ENSG00000189221	MAOA	BRNRS|MAO-A	monoamine oxidase A	protein-coding
79500	chr16	786871	787280	+	0	NA	exon (NM_001324410, exon 4 of 6)	exon (NM_001324410, exon 4 of 6)	1306	NM_001369658	113000		NM_058192	ENSG00000007376	RPUSD1	C16orf40|RLUCL	RNA pseudouridine synthase domain containing 1	protein-coding
238162	chrX	136856801	136857000	+	0	NA	Intergenic	AluSx1|SINE|Alu	22371	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
28639	chr10	59809401	59809650	+	0	NA	intron (NM_005436, intron 5 of 8)	intron (NM_005436, intron 5 of 8)	-56070	NM_001304732	100507027		NM_001304731	ENSG00000227877	MRLN	LINC00948|Linc-RAM|M1|MLN|MUSER1	myoregulin	protein-coding
15543	chr1	150537571	150538230	+	0	NA	Intergenic	Intergenic	-11508	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
161213	chr3	39175751	39175850	+	0	NA	Intergenic	LTR33|LTR|ERVL	16795	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
22237	chr1	212606301	212607430	+	0	NA	intron (NM_001030287, intron 1 of 3)	CpG	-1896	NM_001674	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
78044	chr15	90059451	90060350	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	22307	NR_146321	109729181		NR_146321	ENSG00000259291	ZNF710-AS1	-	ZNF710 antisense RNA 1	ncRNA
185910	chr5	132818951	132819450	+	0	NA	Intergenic	Intergenic	5898	NM_175873	134548		NM_175873	ENSG00000198944	SOWAHA	ANKRD43	sosondowah ankyrin repeat domain family member A	protein-coding
202056	chr6	154165571	154165730	+	0	NA	intron (NM_001130700, intron 11 of 11)	MLT1F2|LTR|ERVL-MaLR	75888	NM_001285527	4988		NM_000914	ENSG00000112038	OPRM1	LMOR|M-OR-1|MOP|MOR|MOR1|OPRM	opioid receptor mu 1	protein-coding
150451	chr21	42476971	42477150	+	0	NA	intron (NM_080860, intron 7 of 8)	intron (NM_080860, intron 7 of 8)	19164	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
198339	chr6	104737701	104737900	+	0	NA	intron (NR_146787, intron 20 of 21)	L1PA2|LINE|L1	121746	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
159254	chr3	12934201	12934400	+	0	NA	intron (NM_014869, intron 3 of 13)	intron (NM_014869, intron 3 of 13)	33430	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
109450	chr19	753171	753530	+	0	NA	intron (NR_135168, intron 1 of 3)	intron (NR_135168, intron 1 of 3)	2238	NR_135168	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
10769	chr1	77280901	77281100	+	0	NA	Intergenic	Intergenic	-1019	NM_174858	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
59140	chr13	21441351	21441530	+	0	NA	intron (NM_153251, intron 1 of 11)	AluY|SINE|Alu	17863	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
220669	chr8	101154651	101154950	+	0	NA	Intergenic	Intergenic	15439	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
113863	chr19	10655681	10656880	+	0	NA	intron (NM_153464, intron 1 of 17)	intron (NM_153464, intron 1 of 17)	1934	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
45138	chr11	117194701	117195350	+	0	NA	TTS (NR_045215)	TTS (NR_045215)	-4269	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
171730	chr3	197953001	197953680	+	0	NA	intron (NM_000996, intron 3 of 4)	FRAM|SINE|Alu	3150	NM_001316311	6165		NM_000996	ENSG00000182899	RPL35A	DBA5|L35A|eL33	ribosomal protein L35a	protein-coding
39913	chr11	62517001	62517350	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	28489	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
14110	chr1	120927851	120928380	+	0	NA	intron (NR_109754, intron 1 of 2)	Tigger15a|DNA|TcMar-Tigger	-14001	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
70067	chr14	100144721	100145480	+	0	NA	TTS (NM_001330221)	TTS (NM_001330221)	14545	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
134444	chr2	143156171	143156730	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	27031	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
60263	chr13	40599901	40601000	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	66191	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
9686	chr1	52921071	52922040	+	0	NA	exon (NM_001198962, exon 1 of 8)	exon (NM_001198962, exon 1 of 8)	185	NM_018281	55268		NM_018281	ENSG00000121310	ECHDC2	-	enoyl-CoA hydratase domain containing 2	protein-coding
128113	chr2	48146721	48146980	+	0	NA	Intergenic	AluJo|SINE|Alu	-167449	NM_001375443	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
143222	chr20	24969151	24969250	+	0	NA	intron (NM_020531, intron 7 of 8)	intron (NM_020531, intron 7 of 8)	19931	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
110557	chr19	2109521	2110130	+	0	NA	intron (NM_001374799, intron 29 of 31)	intron (NM_001374799, intron 29 of 31)	12910	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
422	chr1	1083471	1083900	+	0	NA	intron (NM_017891, intron 9 of 9)	intron (NM_017891, intron 9 of 9)	-9379	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
237900	chrX	131753121	131753380	+	0	NA	intron (NR_152876, intron 7 of 9)	intron (NR_152876, intron 7 of 9)	77393	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
52367	chr12	55656021	55657000	+	0	NA	Intergenic	Intergenic	19618	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
127061	chr2	37365771	37366100	+	0	NA	intron (NM_012413, intron 3 of 6)	L2|LINE|L2	21305	NM_012413	25797		NM_012413	ENSG00000115828	QPCT	GCT|QC|sQC	glutaminyl-peptide cyclotransferase	protein-coding
179068	chr4	166045351	166045950	+	0	NA	intron (NM_012464, intron 12 of 20)	L2a|LINE|L2	172413	NM_012464	7092		NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding
136746	chr2	181300421	181301500	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	4692	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
41839	chr11	67114471	67115280	+	0	NA	intron (NR_160735, intron 1 of 1)	AluSx1|SINE|Alu	3473	NR_160735	107984341		NR_160735		LOC107984341	-	uncharacterized LOC107984341	ncRNA
220580	chr8	100832171	100833330	+	0	NA	Intergenic	LTR41C|LTR|ERVL	-110662	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
45831	chr11	119369451	119369550	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	-5292	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
182620	chr5	66484551	66484700	+	0	NA	Intergenic	L1M4|LINE|L1	26979	NR_105001	101928769		NR_105001		LINC02229	-	long intergenic non-protein coding RNA 2229	ncRNA
157402	chr22	44828051	44828650	+	0	NA	intron (NM_181335, intron 7 of 11)	intron (NM_181335, intron 7 of 11)	75775	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
123755	chr19	55079901	55082100	+	0	NA	intron (NM_133180, intron 7 of 19)	CpG-15147	608	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
124235	chr19	57362921	57364380	+	0	NA	promoter-TSS (NM_001355204)	promoter-TSS (NM_001355204)	99	NM_173631	284306		NM_173631	ENSG00000152433	ZNF547	MIP-2A|SEDLP1|TRAPPC2.19|TRAPPC2B|TRAPPC2P1	zinc finger protein 547	protein-coding
10538	chr1	66974971	66975330	+	0	NA	intron (NM_001077702, intron 12 of 15)	intron (NM_001077702, intron 12 of 15)	44894	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
29754	chr10	72217151	72217650	+	0	NA	promoter-TSS (NR_045564)	promoter-TSS (NR_045564)	-266	NM_001369099	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
137156	chr2	191078451	191078980	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	57189	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
121183	chr19	46492671	46492830	+	0	NA	3' UTR (NM_020709, exon 1 of 1)	3' UTR (NM_020709, exon 1 of 1)	3117	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
36680	chr11	8603901	8604300	+	0	NA	Intergenic	L1MC4|LINE|L1	-9872	NM_001352388	65975		NM_030906	ENSG00000130413	STK33	-	serine/threonine kinase 33	protein-coding
176522	chr4	95188821	95189280	+	0	NA	intron (NM_003728, intron 12 of 15)	intron (NM_003728, intron 12 of 15)	97559	NM_001256794	658		NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMD3|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
23949	chr1	235125871	235126700	+	0	NA	intron (NM_014765, intron 1 of 4)	AluSx|SINE|Alu	1652	NR_002956	677802		NR_002956	ENSG00000207181	SNORA14B	ACA14b	small nucleolar RNA, H/ACA box 14B	snoRNA
237650	chrX	124257951	124258250	+	0	NA	Intergenic	Intergenic	-74560	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
16259	chr1	153975021	153975680	+	0	NA	TTS (NM_130898)	TTS (NM_130898)	2324	NM_006694	10899		NM_006694	ENSG00000143543	JTB	HJTB|HSPC222|PAR|hJT	jumping translocation breakpoint	protein-coding
6915	chr1	31633171	31633330	+	0	NA	non-coding (NR_033686, exon 2 of 4)	non-coding (NR_033686, exon 2 of 4)	11367	NM_001359651	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
113470	chr19	9935321	9935980	+	0	NA	intron (NM_058164, intron 1 of 5)	intron (NM_058164, intron 1 of 5)	865	NM_058164	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
108766	chr18	77130921	77131490	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	1578	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
96383	chr17	40118201	40118600	+	0	NA	Intergenic	L2a|LINE|L2	-3571	NM_001012241	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
236294	chrX	67545101	67545500	+	0	NA	exon (NM_000044, exon 1 of 8)	exon (NM_000044, exon 1 of 8)	677	NM_001011645	367		NM_000044	ENSG00000169083	AR	AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM	androgen receptor	protein-coding
55218	chr12	101804071	101804530	+	0	NA	intron (NM_024312, intron 1 of 20)	intron (NM_024312, intron 1 of 20)	26659	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
200701	chr6	137388921	137389830	+	0	NA	Intergenic	Intergenic	105019	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
21998	chr1	209767101	209767300	+	0	NA	intron (NM_025228, intron 8 of 16)	intron (NM_025228, intron 8 of 16)	-1365	NM_001287754	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
90081	chr16	90017621	90017980	+	0	NA	intron (NM_001288708, intron 1 of 4)	intron (NM_001288708, intron 1 of 4)	1656	NM_001042610	79007		NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
66753	chr14	64516471	64516630	+	0	NA	intron (NR_110550, intron 3 of 3)	MIRb|SINE|MIR	-11337	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
129999	chr2	74100201	74100400	+	0	NA	intron (NM_001366022, intron 10 of 10)	intron (NM_001366022, intron 10 of 10)	47612	NM_001035505	388962		NM_212552	ENSG00000163170	BOLA3	MMDS2	bolA family member 3	protein-coding
219888	chr8	85655221	85655680	+	0	NA	non-coding (NR_003594, exon 1 of 1)	non-coding (NR_003594, exon 1 of 1)	226	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
137203	chr2	191188601	191189500	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-37454	NM_001243835	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
94792	chr17	31092851	31093750	+	0	NA	Intergenic	AluJr|SINE|Alu	1125	NR_039886	100616266		NR_039886	ENSG00000265444	MIR4733	-	microRNA 4733	ncRNA
141742	chr2	241880951	241882680	+	0	NA	intron (NR_110220, intron 1 of 3)	CpG	452	NR_110220	101927289		NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
245	chr1	908751	909250	+	0	NA	Intergenic	CpG	10692	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
188971	chr5	163473621	163473900	+	0	NA	intron (NM_012484, intron 9 of 17)	intron (NM_012484, intron 9 of 17)	13128	NM_001142556	3161		NM_012484	ENSG00000072571	HMMR	CD168|IHABP|RHAMM	hyaluronan mediated motility receptor	protein-coding
7505	chr1	33351701	33351900	+	0	NA	intron (NR_125978, intron 1 of 2)	AluSx|SINE|Alu	1448	NR_125978	101929464		NR_125978	ENSG00000233246	PHC2-AS1	-	PHC2 antisense RNA 1	ncRNA
63532	chr13	114353851	114354200	+	0	NA	Intergenic	(AGGGTT)n|Simple_repeat|Simple_repeat	-20077	NR_126391	104355150		NR_126391		LINC01054	-	long intergenic non-protein coding RNA 1054	ncRNA
15645	chr1	150762601	150762800	+	0	NA	intron (NM_001199739, intron 2 of 6)	L1MA7|LINE|L1	3078	NM_004079	1520		NM_004079	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
185089	chr5	119070321	119071780	+	0	NA	promoter-TSS (NM_001290322)	promoter-TSS (NM_001290322)	-5	NM_001349240	1657		NM_005509	ENSG00000172869	DMXL1	-	Dmx like 1	protein-coding
97025	chr17	42307051	42307350	+	0	NA	intron (NM_001288719, intron 12 of 17)	intron (NM_001288719, intron 12 of 17)	19144	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
193633	chr6	30810621	30811100	+	0	NA	Intergenic	MER74A|LTR|ERVL	19799	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
53956	chr12	71870401	71870600	+	0	NA	intron (NM_001146214, intron 2 of 17)	intron (NM_001146214, intron 2 of 17)	-19517	NR_024072	729633		NR_024072		MRS2P2	-	MRS2 pseudogene 2	pseudo
120512	chr19	44840971	44841850	+	0	NA	Intergenic	Intergenic	-4887	NM_001042724	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
106992	chr18	32035021	32035400	+	0	NA	intron (NM_017831, intron 1 of 5)	MLT1K|LTR|ERVL-MaLR	16385	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
212398	chr7	128108751	128109980	+	0	NA	Intergenic	Intergenic	27504	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
229092	chr9	114374151	114374700	+	0	NA	intron (NM_001317952, intron 2 of 20)	intron (NM_001317952, intron 2 of 20)	13557	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
206142	chr7	27781571	27782130	+	0	NA	intron (NM_006024, intron 5 of 16)	AluSx|SINE|Alu	41755	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
2760	chr1	10689501	10689700	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	107046	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
44537	chr11	107999751	108000150	+	0	NA	Intergenic	Intergenic	-8948	NM_003478	8065		NM_003478	ENSG00000166266	CUL5	CUL-5|VACM-1|VACM1	cullin 5	protein-coding
214184	chr7	146285751	146285850	+	0	NA	Intergenic	(CCCTC)n|Simple_repeat|Simple_repeat	-488471	NM_014141	26047		NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein 2	protein-coding
230563	chr9	128470301	128470900	+	0	NA	intron (NM_001351578, intron 5 of 20)	AluSz|SINE|Alu	13693	NM_153437	4957		NM_002540	ENSG00000136811	ODF2	CT134|ODF2/1|ODF2/2|ODF84	outer dense fiber of sperm tails 2	protein-coding
74836	chr15	63502751	63504900	+	0	NA	promoter-TSS (NM_006537)	promoter-TSS (NM_006537)	-686	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
79127	chr16	220921	221830	+	0	NA	intron (NM_018032, intron 2 of 8)	intron (NM_018032, intron 2 of 8)	8074	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
103859	chr17	79737021	79737280	+	0	NA	exon (NM_178543, exon 4 of 6)	exon (NM_178543, exon 4 of 6)	6207	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
146519	chr20	49918171	49918330	+	0	NA	intron (NR_134564, intron 1 of 2)	L2a|LINE|L2	2428	NR_134564	105372653		NR_134564		LOC105372653	-	uncharacterized LOC105372653	ncRNA
24796	chr10	11171	12500	+	0	NA	non-coding (NR_110795, exon 1 of 3)	non-coding (NR_110795, exon 1 of 3)	114	NR_110795	102723376		NR_110795		LOC102723376	-	uncharacterized LOC102723376	ncRNA
233857	chrX	1521201	1522930	+	0	NA	intron (NM_178129, intron 1 of 1)	AluSq2|SINE|Alu	15120	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
94981	chr17	32285451	32285550	+	0	NA	intron (NM_138328, intron 3 of 8)	intron (NM_138328, intron 3 of 8)	19324	NM_001363835	162494		NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding
202635	chr6	158755271	158755850	+	0	NA	intron (NM_001318745, intron 10 of 14)	intron (NM_001318745, intron 10 of 14)	9193	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
231666	chr9	131671251	131671980	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-20212	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
143577	chr20	31672051	31672150	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	34188	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
207752	chr7	48108871	48110600	+	0	NA	TTS (NM_003364)	TTS (NM_003364)	20470	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
80440	chr16	2653851	2654450	+	0	NA	Intergenic	Intergenic	15168	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
131160	chr2	91525971	91526130	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	133899	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
75223	chr15	64854171	64854730	+	0	NA	intron (NM_025201, intron 2 of 5)	intron (NM_025201, intron 2 of 5)	12535	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
229149	chr9	114489571	114489730	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	13565	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
65027	chr14	39132701	39132900	+	0	NA	intron (NM_001009183, intron 8 of 8)	AluSx1|SINE|Alu	18477	NM_003616	8487		NM_003616	ENSG00000092208	GEMIN2	SIP1|SIP1-delta	gem nuclear organelle associated protein 2	protein-coding
169043	chr3	153140521	153141130	+	0	NA	Intergenic	Helitron3Na_Mam|RC|Helitron	-21401	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
117514	chr19	20079671	20079830	+	0	NA	intron (NM_007138, intron 1 of 3)	MER92B|LTR|ERV1	1750	NM_007138	7643		NM_007138	ENSG00000213988	ZNF90	HTF9	zinc finger protein 90	protein-coding
157594	chr22	46006001	46007000	+	0	NA	promoter-TSS (NR_027240)	promoter-TSS (NR_027240)	-116	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
193734	chr6	31253671	31254080	+	0	NA	Intergenic	MER21-int|LTR|ERVL	18217	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
206099	chr7	27203251	27203350	+	0	NA	intron (NR_037843, intron 2 of 2)	intron (NR_037843, intron 2 of 2)	2879	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
78206	chr15	90593571	90593730	+	0	NA	exon (NM_022769, exon 3 of 15)	exon (NM_022769, exon 3 of 15)	63727	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
136097	chr2	173884471	173884780	+	0	NA	Intergenic	Intergenic	79255	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
161078	chr3	38115821	38117250	+	0	NA	exon (NM_007335, exon 28 of 37)	exon (NM_007335, exon 28 of 37)	20592	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
98109	chr17	45617001	45617400	+	0	NA	Intergenic	AluSc|SINE|Alu	-3129	NR_138259	147081		NM_152466	ENSG00000293460	LINC02210	C17orf69|CRHR1-IT1	long intergenic non-protein coding RNA 2210	ncRNA
194254	chr6	32557801	32558000	+	0	NA	intron (NR_001298, intron 2 of 5)	intron (NR_001298, intron 2 of 5)	2102	NR_001298	3128		NR_001298	ENSG00000290878	HLA-DRB6	-	major histocompatibility complex, class II, DR beta 6 (pseudogene)	pseudo
173219	chr4	6902271	6902430	+	0	NA	Intergenic	Intergenic	-7094	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
35413	chr11	1400201	1400400	+	0	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	-10170	NM_001282218	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
176277	chr4	87072071	87072230	+	0	NA	intron (NM_001313959, intron 3 of 19)	AluY|SINE|Alu	65149	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
54639	chr12	92912171	92912330	+	0	NA	intron (NM_003566, intron 1 of 28)	MLT1H2|LTR|ERVL-MaLR	17045	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
59985	chr13	32324121	32324200	+	0	NA	intron (NM_000059, intron 3 of 26)	L2b|LINE|L2	8652	NM_000059	675		NM_000059	ENSG00000139618	BRCA2	BRCC2|BROVCA2|FACD|FAD|FAD1|FANCD|FANCD1|GLM3|PNCA2|XRCC11	BRCA2 DNA repair associated	protein-coding
101800	chr17	73237651	73238150	+	0	NA	intron (NM_001351265, intron 3 of 4)	intron (NM_001351265, intron 3 of 4)	5239	NM_001100622	55028		NM_017941	ENSG00000141219	MTNAP1	C17orf80|HLC-8|MIG3|SPEP1	mitochondrial nucleoid associated protein 1	protein-coding
62266	chr13	98570701	98571600	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	5957	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
187794	chr5	146211171	146211530	+	0	NA	intron (NM_018989, intron 1 of 20)	intron (NM_018989, intron 1 of 20)	7745	NM_018989	54439		NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18|ZC3H20	RNA binding motif protein 27	protein-coding
9630	chr1	52425771	52426330	+	0	NA	intron (NM_015269, intron 28 of 29)	L2c|LINE|L2	21448	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
130637	chr2	86088021	86088350	+	0	NA	intron (NM_015425, intron 6 of 33)	Charlie16a|DNA|hAT-Charlie	17701	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
200639	chr6	136927401	136927630	+	0	NA	Intergenic	Intergenic	5214	NM_001008783	340146		NM_001008783	ENSG00000182747	SLC35D3	FRCL1	solute carrier family 35 member D3	protein-coding
226526	chr9	71905851	71906150	+	0	NA	intron (NM_016014, intron 1 of 4)	AluJb|SINE|Alu	5193	NM_001025780	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
46650	chr11	128697051	128697500	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-1252	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
73581	chr15	44519621	44520230	+	0	NA	intron (NM_016396, intron 11 of 12)	AluSp|SINE|Alu	16975	NR_034171	645212		NR_034170	ENSG00000179523	EIF3J-DT	EIF3J-AS1	EIF3J divergent transcript	ncRNA
12492	chr1	107954521	107955780	+	0	NA	intron (NM_006113, intron 1 of 26)	MIR|SINE|MIR	-9293	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
231698	chr9	131718301	131718700	+	0	NA	intron (NM_001377935, intron 1 of 26)	L2a|LINE|L2	-8658	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
238495	chrX	153597301	153597600	+	0	NA	intron (NM_152274, intron 1 of 4)	MLT1D|LTR|ERVL-MaLR	1689	NM_001130997	92002		NM_152274	ENSG00000262919	CCNQ	CycM|FAM58A	cyclin Q	protein-coding
124828	chr2	7725201	7726260	+	0	NA	Intergenic	Intergenic	173925	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
143320	chr20	25407171	25408180	+	0	NA	promoter-TSS (NR_134574)	promoter-TSS (NR_134574)	2	NM_021067	9837		NM_021067	ENSG00000101003	GINS1	IMD55|PSF1	GINS complex subunit 1	protein-coding
153321	chr22	24269401	24269800	+	0	NA	Intergenic	Intergenic	-1217	NR_103546	101730217		NR_103546	ENSG00000258555	SPECC1L-ADORA2A	-	SPECC1L-ADORA2A readthrough (NMD candidate)	ncRNA
32124	chr10	101229921	101231130	+	0	NA	intron (NR_029380, intron 1 of 2)	intron (NR_029380, intron 1 of 2)	931	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
152288	chr22	20312801	20313200	+	0	NA	Intergenic	Intergenic	7060	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
179747	chr5	240701	241200	+	0	NA	intron (NM_001330758, intron 11 of 12)	L1PB4|LINE|L1	22630	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
161934	chr3	46102451	46102980	+	0	NA	Intergenic	Intergenic	-16871	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
104265	chr17	80774701	80775330	+	0	NA	intron (NM_020761, intron 6 of 33)	intron (NM_020761, intron 6 of 33)	30617	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
107304	chr18	44818571	44818930	+	0	NA	intron (NM_001130110, intron 2 of 3)	(AC)n|Simple_repeat|Simple_repeat	117875	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
206393	chr7	30771001	30772080	+	0	NA	exon (NM_032222, exon 1 of 18)	exon (NM_032222, exon 1 of 18)	123	NM_032222	84182		NM_032222	ENSG00000106125	MINDY4	AQP-1|AQP1|C7orf67|CHIP28|FAM188B	MINDY lysine 48 deubiquitinase 4	protein-coding
93428	chr17	18474221	18475110	+	0	NA	Intergenic	AluJo|SINE|Alu	-2124	NM_001040078	654346		NM_001040078	ENSG00000171916	LGALS9C	Gal-9B|LGALS9B	galectin 9C	protein-coding
217530	chr8	29257471	29258000	+	0	NA	intron (NM_015254, intron 1 of 39)	AluJo|SINE|Alu	5335	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
52807	chr12	56757401	56758150	+	0	NA	Intergenic	Intergenic	-5452	NM_000946	5557		NM_000946	ENSG00000198056	PRIM1	PDIL|p49	DNA primase subunit 1	protein-coding
107031	chr18	32102751	32102950	+	0	NA	intron (NM_198128, intron 1 of 4)	AluSx|SINE|Alu	10244	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
36037	chr11	2924871	2925400	+	0	NA	exon (NM_002555, exon 11 of 11).2	exon (NM_002555, exon 11 of 11).2	4285	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
169349	chr3	160390751	160391250	+	0	NA	intron (NR_148403, intron 2 of 20)	MER66A|LTR|ERV1	-7234	NM_001190242	57560		NM_020800	ENSG00000068885	IFT80	ATD2|CFAP167|FAP167|SRTD2|WDR56	intraflagellar transport 80	protein-coding
142008	chr20	1588501	1588900	+	0	NA	promoter-TSS (NM_001330639)	promoter-TSS (NM_001330639)	-3	NM_001330639	10326		NM_006065	ENSG00000101307	SIRPB1	CD172b|SIRP-BETA-1	signal regulatory protein beta 1	protein-coding
7807	chr1	36276171	36276530	+	0	NA	intron (NM_001321471, intron 3 of 12)	AluY|SINE|Alu	-30018	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
129124	chr2	65236151	65236730	+	0	NA	intron (NM_005722, intron 1 of 8)	intron (NM_005722, intron 1 of 8)	8609	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
36814	chr11	9670451	9670800	+	0	NA	intron (NM_001297714, intron 1 of 10)	intron (NM_001297714, intron 1 of 10)	6548	NM_015055	23075		NM_015055	ENSG00000133789	SWAP70	HSPC321|SWAP-70	switching B cell complex subunit SWAP70	protein-coding
108798	chr18	77900001	77900480	+	0	NA	Intergenic	Intergenic	93487	NR_104127	101927715		NR_104127	ENSG00000265843	LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
27683	chr10	33117621	33118780	+	0	NA	Intergenic	Intergenic	-1393	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
41542	chr11	66287051	66287150	+	0	NA	intron (NM_001300861, intron 4 of 6)	L2c|LINE|L2	2043	NM_001300861	10897		NM_020470	ENSG00000174851	YIF1A	54TM|FinGER7|YIF1|YIF1P	Yip1 interacting factor homolog A, membrane trafficking protein	protein-coding
174911	chr4	49103451	49103980	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	117073	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
178051	chr4	139734751	139735600	+	0	NA	intron (NM_018717, intron 2 of 4)	CpG	69356	NM_001204368	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
192426	chr6	24882501	24882780	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-5275	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
187693	chr5	143352651	143353180	+	0	NA	intron (NR_157096, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	50368	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
42146	chr11	67658151	67658680	+	0	NA	Intergenic	AluY|SINE|Alu	-7685	NM_080658	91703		NM_080658	ENSG00000132744	ACY3	ACY-3|HCBP1	aminoacylase 3	protein-coding
61191	chr13	49257571	49258680	+	0	NA	intron (NR_036439, intron 3 of 8)	intron (NR_036439, intron 3 of 8)	10200	NR_036439	81602		NM_030911	ENSG00000102543	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
65199	chr14	49656901	49657200	+	0	NA	intron (NM_002692, intron 10 of 18)	AluSx1|SINE|Alu	-21806	NM_018139	55172		NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding
188308	chr5	151175151	151175450	+	0	NA	Intergenic	Intergenic	-17521	NM_001363114	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
19797	chr1	182590701	182590900	+	0	NA	Intergenic	L2a|LINE|L2	-1544	NM_021133	6041		NM_021133	ENSG00000135828	RNASEL	PRCA1|RNS4	ribonuclease L	protein-coding
197878	chr6	89122701	89122930	+	0	NA	Intergenic	Intergenic	-4744	NM_080743	135295		NM_080743	ENSG00000154548	SRSF12	SFRS13B|SFRS19|SRrp35	serine and arginine rich splicing factor 12	protein-coding
87404	chr16	70572521	70572780	+	0	NA	3' UTR (NM_012426, exon 26 of 26)	3' UTR (NM_012426, exon 26 of 26)	-7245	NM_152456	146433		NM_152456	ENSG00000157368	IL34	C16orf77|IL-34	interleukin 34	protein-coding
185383	chr5	127908051	127908230	+	0	NA	intron (NM_001317938, intron 6 of 6)	intron (NM_001317938, intron 6 of 6)	175035	NR_152805	644873		NR_015360	ENSG00000245937	SLC12A2-DT	LINC01184	SLC12A2 divergent transcript	ncRNA
91619	chr17	5391171	5391330	+	0	NA	intron (NM_002532, intron 10 of 16)	MIRb|SINE|MIR	-28391	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
95611	chr17	37570501	37570750	+	0	NA	intron (NM_001163547, intron 8 of 19)	intron (NM_001163547, intron 8 of 19)	38793	NM_001163546	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
61898	chr13	77321771	77322130	+	0	NA	intron (NM_015057, intron 1 of 82)	AluJb|SINE|Alu	5144	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
79099	chr16	187271	187680	+	0	NA	Intergenic	Intergenic	7016	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
212366	chr7	127715101	127715300	+	0	NA	intron (NM_014390, intron 9 of 23)	L1MB3|LINE|L1	63006	NM_014390	27044		NM_014390	ENSG00000197157	SND1	TDRD11|TSN|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
41054	chr11	65478701	65479080	+	0	NA	Intergenic	CpG	-18848	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
13477	chr1	114579651	114580330	+	0	NA	intron (NM_005872, intron 2 of 6)	AluJr|SINE|Alu	1625	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
232131	chr9	134014021	134014380	+	0	NA	Intergenic	CpG	-11276	NR_149319	266655		NM_001355256	ENSG00000235106	BRD3OS	LINC00094|LP2477|NCRNA00094|SERLOC	BRD3 opposite strand	protein-coding
37590	chr11	19346301	19346530	+	0	NA	intron (NM_001111018, intron 1 of 38)	CpG	1179	NM_001111018	89797		NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding
72045	chr15	28736301	28736500	+	0	NA	Intergenic	AluY|SINE|Alu	-1183	NR_026589	440253		NR_026589		WHAMMP2	WHAMML2|WHDC1L2	WHAMM pseudogene 2	pseudo
156335	chr22	40711321	40712180	+	0	NA	Intergenic	LTR81A|LTR|Gypsy	32266	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
98936	chr17	48628101	48628300	+	0	NA	Intergenic	Intergenic	-1842	NM_024017	3219		NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
78881	chr15	100600801	100601500	+	0	NA	intron (NR_148017, intron 1 of 6)	L2a|LINE|L2	1034	NR_148018	55180		NM_018148	ENSG00000140471	LINS1	LINS|MRT27|WINS1	lines homolog 1	protein-coding
23642	chr1	230682851	230683150	+	0	NA	intron (NM_007357, intron 10 of 17)	intron (NM_007357, intron 10 of 17)	31122	NM_001384479	183		NM_000029	ENSG00000135744	AGT	ANHU|SERPINA8|hFLT1	angiotensinogen	protein-coding
129670	chr2	70289071	70289230	+	0	NA	intron (NM_001317171, intron 1 of 2)	AluY|SINE|Alu	4074	NM_001317167	6637		NM_003096	ENSG00000143977	SNRPG	SMG|Sm-G	small nuclear ribonucleoprotein polypeptide G	protein-coding
179592	chr4	185398801	185399200	+	0	NA	TTS (NM_018359)	TTS (NM_018359)	-1713	NM_001377443	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
195462	chr6	37024421	37025180	+	0	NA	intron (NM_173558, intron 13 of 15)	intron (NM_173558, intron 13 of 15)	19145	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
229176	chr9	114588901	114589300	+	0	NA	intron (NM_004888, intron 1 of 2)	L2c|LINE|L2	1331	NM_004888	9550		NM_004888	ENSG00000136888	ATP6V1G1	ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10	ATPase H+ transporting V1 subunit G1	protein-coding
1265	chr1	2306371	2306850	+	0	NA	exon (NM_003036, exon 7 of 7)	exon (NM_003036, exon 7 of 7)	46051	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
31148	chr10	90723601	90724030	+	0	NA	Intergenic	MER104|DNA|TcMar-Tc2	134224	NM_019859	3363		NM_000872	ENSG00000148680	HTR7	5-HT7	5-hydroxytryptamine receptor 7	protein-coding
236788	chrX	79133851	79134350	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-10588	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
37565	chr11	18764001	18764580	+	0	NA	intron (NM_032781, intron 3 of 14)	L3|LINE|CR1	27508	NM_006906	84867		NM_006906	ENSG00000110786	PTPN5	PTPSTEP|STEP|STEP61	protein tyrosine phosphatase non-receptor type 5	protein-coding
81489	chr16	8941851	8942180	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	-5376	NM_001286457	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
85481	chr16	50699651	50700300	+	0	NA	intron (NR_163434, intron 2 of 12)	intron (NR_163434, intron 2 of 12)	595	NM_001293557	64127		NM_022162	ENSG00000167207	NOD2	ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS	nucleotide binding oligomerization domain containing 2	protein-coding
65397	chr14	50789451	50790480	+	0	NA	intron (NM_020921, intron 5 of 30)	intron (NM_020921, intron 5 of 30)	-31832	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
223815	chr8	144826151	144828630	+	0	NA	promoter-TSS (NM_001349808)	promoter-TSS (NM_001349808)	-128	NM_001282797	7553		NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding
201230	chr6	143575351	143575700	+	0	NA	Intergenic	Intergenic	-6186	NR_027113	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
35849	chr11	2315051	2315430	+	0	NA	intron (NM_139022, intron 6 of 9)	intron (NM_139022, intron 6 of 9)	-12100	NR_138249	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
31841	chr10	99658751	99660250	+	0	NA	promoter-TSS (NM_020354)	promoter-TSS (NM_020354)	-9	NM_020354	57089		NM_020354	ENSG00000198018	ENTPD7	LALP1	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
50345	chr12	47144951	47145450	+	0	NA	intron (NM_001281429, intron 2 of 2)	Tigger1|DNA|TcMar-Tigger	-42612	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
215322	chr7	157351371	157351780	+	0	NA	intron (NM_001363676, intron 1 of 6)	AluY|SINE|Alu	14571	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
34876	chr11	361801	362500	+	0	NA	Intergenic	LTR13|LTR|ERVK	-7349	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
218165	chr8	41951601	41951800	+	0	NA	intron (NM_001305878, intron 9 of 13)	intron (NM_001305878, intron 9 of 13)	-54959	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
170919	chr3	194143051	194143150	+	0	NA	Intergenic	AluYj4|SINE|Alu	6952	NM_005524	3280		NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
58718	chr12	132575671	132576250	+	0	NA	intron (NM_001367871, intron 14 of 18)	intron (NM_001367871, intron 14 of 18)	-6037	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
78188	chr15	90562001	90562800	+	0	NA	intron (NM_001042574, intron 2 of 14)	MIRb|SINE|MIR	32477	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
221362	chr8	123328971	123329930	+	0	NA	intron (NM_014109, intron 24 of 27)	MIR|SINE|MIR	-18584	NR_037516	100500863		NR_037516	ENSG00000207704	MIR548AA1	-	microRNA 548aa-1	ncRNA
28932	chr10	63196721	63197180	+	0	NA	intron (NM_001322258, intron 12 of 24)	AluJo|SINE|Alu	63622	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
208314	chr7	66119021	66119480	+	0	NA	intron (NM_001040648, intron 1 of 2)	MER21A|LTR|ERVL	4403	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
210860	chr7	101124551	101125380	+	0	NA	Intergenic	Intergenic	-2139	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
14350	chr1	144002271	144002430	+	0	NA	intron (NR_120535, intron 2 of 7)	intron (NR_120535, intron 2 of 7)	-28831	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
207880	chr7	50390021	50390480	+	0	NA	intron (NM_006060, intron 6 of 7)	intron (NM_006060, intron 6 of 7)	60100	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
181467	chr5	42057201	42057500	+	0	NA	Intergenic	Intergenic	117995	NR_104635	101926960		NR_104635		LINC02996	-	long intergenic non-protein coding RNA 2996	ncRNA
126574	chr2	28750651	28752710	+	0	NA	promoter-TSS (NM_002709)	promoter-TSS (NM_002709)	-68	NM_206876	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
155187	chr22	37801821	37803400	+	0	NA	Intergenic	(GAGGC)n|Simple_repeat|Simple_repeat	-2619	NM_005318	3005		NM_005318	ENSG00000189060	H1-0	H1.0|H10|H1F0|H1FV	H1.0 linker histone	protein-coding
195575	chr6	37505571	37505930	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-1598	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
106485	chr18	14449301	14449530	+	0	NA	Intergenic	Intergenic	49291	NR_024076	440224		NR_024076	ENSG00000293262	CXADRP3	-	CXADR pseudogene 3	pseudo
131313	chr2	96120871	96121430	+	0	NA	Intergenic	L2b|LINE|L2	-4579	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
163066	chr3	49945321	49945580	+	0	NA	intron (NR_146071, intron 1 of 15)	L1MB3|LINE|L1	5300	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
86212	chr16	58026501	58027980	+	0	NA	intron (NM_002428, intron 1 of 9)	CpG	1486	NM_002428	4324		NM_002428	ENSG00000102996	MMP15	MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15	protein-coding
183745	chr5	81299401	81300030	+	0	NA	intron (NR_034122, intron 1 of 3)	intron (NR_034122, intron 1 of 3)	1854	NR_034122	100131067		NR_034121	ENSG00000247572	CKMT2-AS1	-	CKMT2 antisense RNA 1	ncRNA
2924	chr1	11733371	11733530	+	0	NA	Intergenic	MER39|LTR|ERV1	-2635	NM_001040194	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
5162	chr1	24922121	24923190	+	0	NA	intron (NM_001031680, intron 3 of 5)	Charlie4a|DNA|hAT-Charlie	-3239	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
78723	chr15	98650441	98651320	+	0	NA	non-coding (NR_126453, exon 1 of 1)	non-coding (NR_126453, exon 1 of 1)	341	NR_126453	104472848		NR_126453		IRAIN	IGF1R-AS|IGF1RAS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
75706	chr15	68058501	68058700	+	0	NA	intron (NM_001320687, intron 2 of 14)	intron (NM_001320687, intron 2 of 14)	4024	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
93646	chr17	19183771	19184530	+	0	NA	Intergenic	AluSx|SINE|Alu	-3866	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
97360	chr17	43302071	43302230	+	0	NA	Intergenic	AluJr|SINE|Alu	-1919	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
182594	chr5	66012321	66012780	+	0	NA	intron (NM_001253697, intron 5 of 25)	A-rich|Low_complexity|Low_complexity	-66977	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
138383	chr2	204049621	204049980	+	0	NA	Intergenic	L2a|LINE|L2	113037	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
106618	chr18	22346401	22347530	+	0	NA	Intergenic	Intergenic	70950	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
123583	chr19	54461321	54461600	+	0	NA	TTS (NM_001301782).3	TTS (NM_001301782).3	2318	NM_198988	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
17620	chr1	156961821	156962280	+	0	NA	intron (NM_014784, intron 12 of 39)	intron (NM_014784, intron 12 of 39)	-25806	NR_030527	768220		NR_030527	ENSG00000211581	MIR765	MIRN765|hsa-mir-765|mir-765	microRNA 765	ncRNA
95040	chr17	32503421	32504430	+	0	NA	intron (NM_015194, intron 21 of 21)	intron (NM_015194, intron 21 of 21)	16932	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
233678	chrX	1165901	1166680	+	0	NA	Intergenic	Intergenic	46359	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
135308	chr2	160301401	160301800	+	0	NA	intron (NM_016836, intron 5 of 13)	intron (NM_016836, intron 5 of 13)	-29705	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
212730	chr7	129853771	129854130	+	0	NA	intron (NM_182697, intron 3 of 4)	intron (NM_182697, intron 3 of 4)	-78936	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
201384	chr6	145214571	145214730	+	0	NA	Intergenic	Intergenic	472227	NM_001368132	7957		NM_005670	ENSG00000112425	EPM2A	EPM2|MELF|MELF2	EPM2A glucan phosphatase, laforin	protein-coding
153827	chr22	29839451	29839550	+	0	NA	Intergenic	AluSc|SINE|Alu	-1226	NM_001369943	84164		NM_032204	ENSG00000100325	ASCC2	ASC1p100|p100	activating signal cointegrator 1 complex subunit 2	protein-coding
71920	chr15	22794321	22794730	+	0	NA	intron (NM_144599, intron 1 of 4)	L1MB3|LINE|L1	7881	NM_144599	123606		NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
97395	chr17	43366421	43367000	+	0	NA	Intergenic	L1M1|LINE|L1	22188	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
204631	chr7	5396051	5398130	+	0	NA	intron (NM_001080495, intron 2 of 29)	intron (NM_001080495, intron 2 of 29)	26456	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
218504	chr8	52764271	52764700	+	0	NA	Intergenic	LTR57-int|LTR|ERVL	-50019	NM_001083617	9821		NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
202552	chr6	158652101	158652300	+	0	NA	intron (NM_001242395, intron 2 of 15)	AluSx1|SINE|Alu	2186	NM_001242394	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
228551	chr9	101532651	101532750	+	0	NA	Intergenic	Intergenic	-1153	NM_019592	56254		NM_019592	ENSG00000155827	RNF20	BRE1|BRE1A|hBRE1	ring finger protein 20	protein-coding
233351	chr9	137455501	137455700	+	0	NA	intron (NM_015537, intron 4 of 14)	intron (NM_015537, intron 4 of 14)	3734	NM_001130971	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
64202	chr14	23032671	23033030	+	0	NA	intron (NM_001144932, intron 2 of 3)	AluY|SINE|Alu	2050	NM_002797	5693		NM_002797	ENSG00000100804	PSMB5	LMPX|MB1	proteasome 20S subunit beta 5	protein-coding
163098	chr3	50108621	50109080	+	0	NA	intron (NR_036627, intron 13 of 23)	intron (NR_036627, intron 13 of 23)	-7862	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
98307	chr17	46241351	46241850	+	0	NA	Intergenic	Intergenic	-16233	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
17571	chr1	156834971	156835330	+	0	NA	intron (NM_001007792, intron 1 of 16)	intron (NM_001007792, intron 1 of 16)	-18302	NM_001161441	9047		NM_003975	ENSG00000027869	SH2D2A	F2771|SCAP|TSAD|VRAP	SH2 domain containing 2A	protein-coding
128262	chr2	54576571	54576930	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	18356	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
102261	chr17	75274721	75275580	+	0	NA	intron (NM_001126121, intron 7 of 7)	AluJr|SINE|Alu	3851	NR_036520	100287042		NR_036520	ENSG00000263843	MIF4GD-DT	-	MIF4GD divergent transcript	ncRNA
201017	chr6	141463721	141463980	+	0	NA	Intergenic	MIR|SINE|MIR	-669309	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
131019	chr2	88014271	88014880	+	0	NA	Intergenic	Intergenic	-28785	NM_001024457	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
187288	chr5	141568571	141568930	+	0	NA	intron (NM_005219, intron 17 of 27)	intron (NM_005219, intron 17 of 27)	10439	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
108330	chr18	63951271	63951430	+	0	NA	intron (NM_001123366, intron 1 of 3)	intron (NM_001123366, intron 1 of 3)	2049	NM_001123366	284293		NM_001123366	ENSG00000221887	HMSD	ACC-6|ACC6|C18orf53|HSMD-v	histocompatibility minor serpin domain containing	protein-coding
26660	chr10	22603701	22604200	+	0	NA	intron (NM_001330062, intron 3 of 9)	intron (NM_001330062, intron 3 of 9)	110158	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
135971	chr2	172097851	172098280	+	0	NA	Intergenic	Intergenic	4835	NM_004405	1746		NM_004405	ENSG00000115844	DLX2	TES-1|TES1	distal-less homeobox 2	protein-coding
68832	chr14	91274901	91275800	+	0	NA	intron (NM_001080414, intron 29 of 29)	intron (NM_001080414, intron 29 of 29)	-21470	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
175625	chr4	76179771	76180180	+	0	NA	intron (NM_005506, intron 3 of 11)	intron (NM_005506, intron 3 of 11)	-31460	NR_103780	53371		NM_017426	ENSG00000138750	NUP54	DYT37	nucleoporin 54	protein-coding
141597	chr2	241633371	241633900	+	0	NA	exon (NM_015963, exon 2 of 6)	exon (NM_015963, exon 2 of 6)	3523	NM_015963	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
83900	chr16	28986631	28987080	+	0	NA	exon (NM_001014989, exon 9 of 13)	exon (NM_001014989, exon 9 of 13)	1803	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
121963	chr19	48480311	48481680	+	0	NA	3' UTR (NM_004228, exon 12 of 12)	3' UTR (NM_004228, exon 12 of 12)	11626	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
152794	chr22	21831801	21832280	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	35605	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
112714	chr19	7191271	7191630	+	0	NA	intron (NM_001079817, intron 2 of 20)	intron (NM_001079817, intron 2 of 20)	102964	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
164556	chr3	63979111	63980130	+	0	NA	intron (NM_001128149, intron 1 of 8)	intron (NM_001128149, intron 1 of 8)	11826	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
142464	chr20	4085021	4086080	+	0	NA	Intergenic	Intergenic	-63229	NM_001270691	54498		NM_019025	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
237833	chrX	130079551	130080530	+	0	NA	intron (NM_001421, intron 2 of 8)	MIR3|SINE|MIR	30457	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
79329	chr16	574471	574630	+	0	NA	exon (NM_148920, exon 2 of 10)	exon (NM_148920, exon 2 of 10)	4582	NM_004204	9091		NM_004204	ENSG00000007541	PIGQ	DEE77|EIEE77|GPI1|GPIBD19|MCAHS4|c407A10.1	phosphatidylinositol glycan anchor biosynthesis class Q	protein-coding
115923	chr19	16617951	16618530	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	9964	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
26695	chr10	22640421	22640750	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	73523	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
208087	chr7	56099651	56099750	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-6704	NR_047689	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
3803	chr1	16728421	16729100	+	0	NA	Intergenic	Intergenic	-8603	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
153545	chr22	26589451	26590850	+	0	NA	promoter-TSS (NM_001362923)	promoter-TSS (NM_001362923)	-18	NM_001362922	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
138089	chr2	202233421	202233680	+	0	NA	intron (NR_163943, intron 1 of 5)	MLT1H1|LTR|ERVL-MaLR	5047	NM_003352	7341		NM_003352	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin like modifier 1	protein-coding
176026	chr4	82352771	82353300	+	0	NA	TTS (NM_031369)	TTS (NM_031369)	20956	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
231912	chr9	133098101	133099100	+	0	NA	exon (NM_001042368, exon 18 of 18)	exon (NM_001042368, exon 18 of 18)	16061	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
169376	chr3	160444521	160444930	+	0	NA	intron (NR_148403, intron 1 of 20)	MLT1H|LTR|ERVL-MaLR	5061	NM_173084	286827		NM_173084	ENSG00000213186	TRIM59	IFT80L|MRF1|RNF104|TRIM57|TSBF1	tripartite motif containing 59	protein-coding
125721	chr2	20595571	20596600	+	0	NA	Intergenic	Intergenic	-3537	NR_046836	100874343		NR_046836	ENSG00000231948	HS1BP3-IT1	-	HS1BP3 intronic transcript 1	ncRNA
67476	chr14	70907021	70908980	+	0	NA	exon (NM_001308160, exon 1 of 34)	exon (NM_001308160, exon 1 of 34)	541	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
9087	chr1	45003501	45003700	+	0	NA	intron (NM_024602, intron 20 of 20)	intron (NM_024602, intron 20 of 20)	7724	NM_024602	79654		NM_024602	ENSG00000126107	HECTD3	-	HECT domain E3 ubiquitin protein ligase 3	protein-coding
141411	chr2	240924301	240924680	+	0	NA	intron (NM_001351305, intron 4 of 31)	intron (NM_001351305, intron 4 of 31)	18154	NM_001351305	728763		NM_001351305	ENSG00000226321	CROCC2	-	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding
66273	chr14	61373151	61373730	+	0	NA	intron (NM_006255, intron 1 of 13)	MSTA|LTR|ERVL-MaLR	51997	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
111761	chr19	4385251	4385550	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	15147	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
76077	chr15	72478751	72479350	+	0	NA	intron (NM_005744, intron 1 of 13)	AluJr|SINE|Alu	4720	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
227256	chr9	89359971	89360530	+	0	NA	TTS (NM_001354697)	TTS (NM_001354697)	41399	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
231283	chr9	130026421	130027300	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluJb|SINE|Alu	16329	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
171854	chr4	716501	717130	+	0	NA	intron (NM_001317836, intron 1 of 11)	intron (NM_001317836, intron 1 of 11)	10983	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
234135	chrX	10003371	10004080	+	0	NA	Intergenic	Intergenic	-11529	NM_015691	55841		NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
69594	chr14	97378671	97379700	+	0	NA	Intergenic	MER74A|LTR|ERVL	-79631	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
16779	chr1	155512171	155512530	+	0	NA	intron (NM_018489, intron 2 of 27)	AluSx|SINE|Alu	-49692	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
158480	chr22	50781401	50781680	+	0	NA	intron (NM_001003789, intron 2 of 8)	intron (NM_001003789, intron 2 of 8)	2096	NM_001350008	11158		NM_007081	ENSG00000079974	RABL2B	-	RAB, member of RAS oncogene family like 2B	protein-coding
86724	chr16	67566601	67567150	+	0	NA	intron (NM_006565, intron 1 of 11)	intron (NM_006565, intron 1 of 11)	-3898	NM_001363916	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
62480	chr13	99386601	99386800	+	0	NA	TTS (NM_177967)	TTS (NM_177967)	30569	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
197657	chr6	85447901	85448100	+	0	NA	Intergenic	Intergenic	-1584	NM_001204813	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
108284	chr18	63310451	63310550	+	0	NA	intron (NM_000633, intron 2 of 2)	L2b|LINE|L2	9269	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
134707	chr2	144503221	144503480	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-16264	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
204709	chr7	5534771	5535330	+	0	NA	Intergenic	AluJb|SINE|Alu	-4449	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
199459	chr6	117673871	117674230	+	0	NA	non-coding (NR_110854, exon 3 of 3)	non-coding (NR_110854, exon 3 of 3)	1234	NR_110854	101927919		NR_110854		LOC101927919	-	uncharacterized LOC101927919	ncRNA
66086	chr14	59275001	59275230	+	0	NA	intron (NM_001270520, intron 2 of 24)	intron (NM_001270520, intron 2 of 24)	11674	NM_014992	23002		NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
148481	chr20	64051971	64052680	+	0	NA	Intergenic	Intergenic	-2686	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
209538	chr7	77195801	77196000	+	0	NA	3' UTR (NM_006682, exon 2 of 2)	3' UTR (NM_006682, exon 2 of 2)	3919	NM_006682	10875		NM_006682	ENSG00000127951	FGL2	T49|pT49	fibrinogen like 2	protein-coding
43207	chr11	75425471	75426280	+	0	NA	intron (NM_001039548, intron 3 of 5)	intron (NM_001039548, intron 3 of 5)	4754	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
161162	chr3	39099051	39099900	+	0	NA	exon (NM_001278790, exon 4 of 6)	exon (NM_001278790, exon 4 of 6)	8152	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
112613	chr19	6744601	6744800	+	0	NA	exon (NM_004240, exon 8 of 14)	exon (NM_004240, exon 8 of 14)	5020	NM_001288963	9322		NM_004240	ENSG00000125733	TRIP10	CIP4|HSTP|STOT|STP|TRIP-10	thyroid hormone receptor interactor 10	protein-coding
152693	chr22	21626771	21627500	+	0	NA	TTS (NM_001017964)	TTS (NM_001017964)	2887	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
238982	chrX	155612071	155613090	+	0	NA	promoter-TSS (NM_001304990)	promoter-TSS (NM_001304990)	15	NM_001304990	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
77487	chr15	84587671	84588600	+	0	NA	Intergenic	Intergenic	-12874	NM_001007072	54993		NM_017894	ENSG00000176371	ZSCAN2	ZFP29|ZNF854	zinc finger and SCAN domain containing 2	protein-coding
101214	chr17	65562971	65563330	+	0	NA	Intergenic	Intergenic	-1502	NM_004655	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
21064	chr1	203295221	203295480	+	0	NA	Intergenic	L2|LINE|L2	7650	NR_117098	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
47229	chr12	952501	953300	+	0	NA	intron (NM_001297419, intron 1 of 11)	AluSq2|SINE|Alu	-3178	NR_123713	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
151410	chr21	46054701	46055100	+	0	NA	Intergenic	Intergenic	-43212	NM_058174	1292		NM_001849	ENSG00000142173	COL6A2	BTHLM1|BTHLM1B|PP3610|UCMD1|UCMD1B	collagen type VI alpha 2 chain	protein-coding
111490	chr19	3966071	3966680	+	0	NA	intron (NM_001348, intron 2 of 8)	intron (NM_001348, intron 2 of 8)	4724	NM_001348	1613		NM_001348	ENSG00000167657	DAPK3	DLK|ZIP|ZIPK	death associated protein kinase 3	protein-coding
18193	chr1	160853671	160854230	+	0	NA	intron (NM_001166664, intron 1 of 7)	intron (NM_001166664, intron 1 of 7)	8937	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
238213	chrX	139766451	139766900	+	0	NA	intron (NM_173694, intron 20 of 29)	intron (NM_173694, intron 20 of 29)	-58453	NM_001099855	4168		NM_005369	ENSG00000101977	MCF2	ARHGEF21|DBL	MCF.2 cell line derived transforming sequence	protein-coding
177350	chr4	110088671	110088980	+	0	NA	intron (NM_024090, intron 2 of 3)	MER44C|DNA|TcMar-Tigger	109790	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
197907	chr6	89372071	89372850	+	0	NA	exon (NM_021244, exon 6 of 7)	exon (NM_021244, exon 6 of 7)	-19738	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
181838	chr5	52946301	52946500	+	0	NA	intron (NM_181501, intron 27 of 28)	intron (NM_181501, intron 27 of 28)	-42952	NR_073107	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
172915	chr4	3498471	3498630	+	0	NA	intron (NM_001301071, intron 8 of 9)	intron (NM_001301071, intron 8 of 9)	14006	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
202756	chr6	159040721	159041300	+	0	NA	intron (NM_054114, intron 6 of 9)	intron (NM_054114, intron 6 of 9)	1343	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
230914	chr9	129292051	129292350	+	0	NA	Intergenic	L1MEf|LINE|L1	9784	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
67115	chr14	68468521	68468980	+	0	NA	intron (NM_001321818, intron 10 of 10)	(TCCTG)n|Simple_repeat|Simple_repeat	160037	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
170852	chr3	190964871	190965050	+	0	NA	Intergenic	L1HS|LINE|L1	87030	NR_024343	100170222		NR_024343		SNAR-I	snaR-3	small NF90 (ILF3) associated RNA I	snRNA
5532	chr1	25810451	25811600	+	0	NA	intron (NM_206926, intron 6 of 11)	intron (NM_206926, intron 6 of 11)	-8881	NM_001099627	56181		NM_019557	ENSG00000117640	MTFR1L	FAM54B|HYST1888|MST116|MSTP116	mitochondrial fission regulator 1 like	protein-coding
79570	chr16	986271	986430	+	0	NA	3' UTR (NM_014587, exon 3 of 3)	3' UTR (NM_014587, exon 3 of 3)	4580	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
124104	chr19	55653321	55654400	+	0	NA	TTS (NM_001370471)	TTS (NM_001370471)	-1175	NM_007279	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
114151	chr19	11338271	11338450	+	0	NA	intron (NM_004283, intron 1 of 4)	intron (NM_004283, intron 1 of 4)	1297	NM_004283	9545		NM_004283	ENSG00000105514	RAB3D	D2-2|GOV|RAB16|RAD3D	RAB3D, member RAS oncogene family	protein-coding
160164	chr3	22052951	22053050	+	0	NA	Intergenic	L1HS|LINE|L1	95861	NR_046876	100874221		NR_046876	ENSG00000223351	ZNF385D-AS2	-	ZNF385D antisense RNA 2	ncRNA
117963	chr19	33297851	33298150	+	0	NA	Intergenic	Intergenic	4534	NM_004364	1050		NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	CCAAT enhancer binding protein alpha	protein-coding
81814	chr16	11554251	11554550	+	0	NA	intron (NM_004862, intron 2 of 3)	intron (NM_004862, intron 2 of 3)	-27153	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
103698	chr17	78815821	78816150	+	0	NA	intron (NR_169585, intron 10 of 19)	(AC)n|Simple_repeat|Simple_repeat	24829	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
100983	chr17	64580751	64581250	+	0	NA	intron (NM_022739, intron 7 of 18)	intron (NM_022739, intron 7 of 18)	74023	NM_138363	90799		NM_138363	ENSG00000258890	CEP95	CCDC45	centrosomal protein 95	protein-coding
8744	chr1	42697851	42698150	+	0	NA	intron (NR_132737, intron 5 of 6)	intron (NR_132737, intron 5 of 6)	14864	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
52608	chr12	56235071	56235430	+	0	NA	exon (NM_001135195, exon 5 of 11)	exon (NM_001135195, exon 5 of 11)	4533	NM_001135195	283375		NM_173596	ENSG00000139540	SLC39A5	LZT-Hs7|MYP24|ZIP5	solute carrier family 39 member 5	protein-coding
163232	chr3	50263601	50264950	+	0	NA	Intergenic	Intergenic	3096	NR_110702	101928931		NR_110702		SEMA3B-AS1	-	SEMA3B antisense RNA 1 (head to head)	ncRNA
164752	chr3	69078421	69078680	+	0	NA	intron (NM_198195, intron 1 of 16)	AluJb|SINE|Alu	1815	NM_003968	9039		NM_003968	ENSG00000144744	UBA3	NAE2|UBE1C|hUBA3	ubiquitin like modifier activating enzyme 3	protein-coding
177665	chr4	121484571	121484880	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-103707	NM_198179	84109		NM_198179	ENSG00000186867	QRFPR	AQ27|GPR103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
135645	chr2	168253301	168253800	+	0	NA	Intergenic	MER65A|LTR|ERV1	-5955	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
116827	chr19	18567871	18568030	+	0	NA	intron (NM_001171948, intron 5 of 5)	MIRb|SINE|MIR	-3780	NM_001321017	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
100212	chr17	59160201	59161000	+	0	NA	intron (NM_018304, intron 1 of 9)	intron (NM_018304, intron 1 of 9)	4854	NM_018304	55771		NM_018304	ENSG00000068489	PRR11	-	proline rich 11	protein-coding
47905	chr12	6750351	6750730	+	0	NA	intron (NM_001382226, intron 5 of 8)	intron (NM_001382226, intron 5 of 8)	2376	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
233800	chrX	1451501	1451700	+	0	NA	intron (NM_001173473, intron 1 of 12).2	intron (NM_001173473, intron 1 of 12).2	1309	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
20600	chr1	198787471	198788030	+	0	NA	Intergenic	MIR|SINE|MIR	71232	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
129808	chr2	71466301	71466950	+	0	NA	promoter-TSS (NM_001130983)	promoter-TSS (NM_001130983)	-74	NM_001130984	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
211256	chr7	102672831	102673730	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1545	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
95117	chr17	34999301	34999500	+	0	NA	exon (NM_002311, exon 15 of 20)	exon (NM_002311, exon 15 of 20)	18888	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
12990	chr1	110916751	110917150	+	0	NA	Intergenic	MLT2F|LTR|ERVL	43802	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
177801	chr4	123402051	123402350	+	0	NA	exon (NM_005841, exon 2 of 2)	exon (NM_005841, exon 2 of 2)	2660	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
113335	chr19	8610261	8610980	+	0	NA	promoter-TSS (NM_030957)	promoter-TSS (NM_030957)	95	NM_030957	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
96344	chr17	40064271	40064650	+	0	NA	intron (NM_199334, intron 1 of 8)	intron (NM_199334, intron 1 of 8)	1495	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
162509	chr3	48584501	48584780	+	0	NA	intron (NM_000094, intron 35 of 118)	intron (NM_000094, intron 35 of 118)	-5663	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
123055	chr19	51338501	51339400	+	0	NA	exon (NM_001163922, exon 5 of 10)	exon (NM_001163922, exon 5 of 10)	3174	NM_001163922	147645		NM_001163922	ENSG00000186806	VSIG10L	-	V-set and immunoglobulin domain containing 10 like	protein-coding
198116	chr6	90368971	90369430	+	0	NA	Intergenic	Intergenic	56458	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
81037	chr16	4305171	4305530	+	0	NA	Intergenic	AluYc|SINE|Alu	-9411	NM_001318918	84662		NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding
179768	chr5	274401	274600	+	0	NA	intron (NM_001267557, intron 2 of 3)	MIRb|SINE|MIR	2854	NM_001267559	10016		NM_013232	ENSG00000249915	PDCD6	ALG-2|ALG2|PEF1B	programmed cell death 6	protein-coding
136046	chr2	172510621	172511080	+	0	NA	Intergenic	Intergenic	-44523	NR_103731	5163		NM_002610	ENSG00000152256	PDK1	-	pyruvate dehydrogenase kinase 1	protein-coding
127761	chr2	44005201	44005680	+	0	NA	Intergenic	MLT1K-int|LTR|ERVL-MaLR	-9451	NM_133259	10128		NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC|MC4DN5	leucine rich pentatricopeptide repeat containing	protein-coding
149983	chr21	36707201	36707400	+	0	NA	intron (NM_005069, intron 1 of 10)	intron (NM_005069, intron 1 of 10)	8185	NM_009586	6493		NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	SIM bHLH transcription factor 2	protein-coding
127490	chr2	42254271	42254630	+	0	NA	intron (NM_019063, intron 2 of 22)	AluJb|SINE|Alu	-84219	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
12965	chr1	110887471	110887630	+	0	NA	intron (NM_001040033, intron 2 of 8)	L1ME1|LINE|L1	14402	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
99213	chr17	49567671	49568630	+	0	NA	intron (NR_103773, intron 1 of 2)	CpG	5914	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
61697	chr13	74057051	74057750	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	76529	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
226895	chr9	78295301	78295700	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	-1625	NM_021154	29968		NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding
171030	chr3	195147571	195148500	+	0	NA	non-coding (NR_102710, exon 1 of 2)	non-coding (NR_102710, exon 1 of 2)	164	NR_102711	101410543		NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
149212	chr21	25421121	25422200	+	0	NA	intron (NR_024027, intron 3 of 4)	MIRc|SINE|MIR	10041	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
191186	chr6	5178521	5178880	+	0	NA	intron (NM_001164841, intron 2 of 3)	AluSx|SINE|Alu	-30378	NR_037462	100500900		NR_037462	ENSG00000265083	MIR3691	mir-3691	microRNA 3691	ncRNA
198634	chr6	107789901	107790500	+	0	NA	intron (NM_198081, intron 1 of 7)	MamTip2|DNA|hAT-Tip100	34113	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
80942	chr16	3851621	3852280	+	0	NA	intron (NM_004380, intron 1 of 30)	AluYh3|SINE|Alu	28170	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
197422	chr6	73584051	73584350	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-63168	NM_001402	1915		NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding
165486	chr3	99831971	99832430	+	0	NA	TTS (NM_001282794)	TTS (NM_001282794)	-8335	NR_110821	101929357		NR_110821		HP09053	-	uncharacterized LOC101929357	ncRNA
27644	chr10	32971521	32972000	+	0	NA	Intergenic	L3b|LINE|CR1	-13530	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
17737	chr1	158969251	158969550	+	0	NA	intron (NM_198930, intron 7 of 7)	intron (NM_198930, intron 7 of 7)	-30576	NM_001364867	3428		NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding
88290	chr16	84013751	84014650	+	0	NA	intron (NM_001080442, intron 9 of 10)	intron (NM_001080442, intron 9 of 10)	28595	NM_001080442	146167		NM_001080442	ENSG00000166558	SLC38A8	FHASD|FVH2|SNAT8	solute carrier family 38 member 8	protein-coding
32748	chr10	104316851	104317150	+	0	NA	intron (NM_001272013, intron 1 of 1)	MIRb|SINE|MIR	-6364	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
179796	chr5	378621	378950	+	0	NA	intron (NR_165159, intron 6 of 13)	intron (NR_165159, intron 6 of 13)	56175	NM_001377239	57491		NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl hydrocarbon receptor repressor	protein-coding
134882	chr2	148876251	148876430	+	0	NA	intron (NM_004522, intron 1 of 25)	intron (NM_004522, intron 1 of 25)	1113	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
44251	chr11	101280951	101281050	+	0	NA	Intergenic	L1P1|LINE|L1	-151187	NM_001271162	5241		NM_000926	ENSG00000082175	PGR	NR3C3|PR	progesterone receptor	protein-coding
160505	chr3	30630651	30632530	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	24989	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
105141	chr17	82241401	82242680	+	0	NA	TTS (NM_001893)	TTS (NM_001893)	5372	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
58386	chr12	131836271	131836630	+	0	NA	intron (NM_016155, intron 1 of 9)	intron (NM_016155, intron 1 of 9)	8057	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
77039	chr15	78761371	78762730	+	0	NA	intron (NM_014272, intron 23 of 23)	intron (NM_014272, intron 23 of 23)	10013	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
206226	chr7	28922621	28923030	+	0	NA	Intergenic	Intergenic	35505	NM_014817	9865		NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
200382	chr6	134249501	134250150	+	0	NA	intron (NM_001143676, intron 2 of 13)	intron (NM_001143676, intron 2 of 13)	68233	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
30154	chr10	74175971	74177500	+	0	NA	promoter-TSS (NM_001202449)	promoter-TSS (NM_001202449)	-28	NM_001123	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
55142	chr12	98612601	98613130	+	0	NA	TTS (NM_201613)	TTS (NM_201613)	13230	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
124565	chr2	604651	605050	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	46649	NR_136169	105373352		NR_136168	ENSG00000233633	LOC105373352	-	uncharacterized LOC105373352	ncRNA
217362	chr8	27865151	27865250	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	20916	NR_036249	100422828		NR_036249	ENSG00000265847	MIR4287	-	microRNA 4287	ncRNA
88265	chr16	82924101	82924750	+	0	NA	intron (NM_001220490, intron 2 of 12)	intron (NM_001220490, intron 2 of 12)	65873	NR_110937	101928417		NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
186981	chr5	139699751	139700430	+	0	NA	Intergenic	Intergenic	24647	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
194311	chr6	32825951	32826450	+	0	NA	3' UTR (NM_001290043, exon 12 of 12).2	3' UTR (NM_001290043, exon 12 of 12).2	-9198	NM_002120	3112		NM_002120	ENSG00000241106	HLA-DOB	DOB|HLA_DOB	major histocompatibility complex, class II, DO beta	protein-coding
166018	chr3	108300301	108300700	+	0	NA	intron (NM_001370244, intron 1 of 9)	intron (NM_001370244, intron 1 of 9)	-1985	NM_007072	11148		NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HHLA2 member of B7 family	protein-coding
75502	chr15	66393871	66394230	+	0	NA	intron (NM_002755, intron 1 of 10)	L2a|LINE|L2	7138	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
84042	chr16	29571671	29572600	+	0	NA	intron (NR_135305, intron 1 of 13)	intron (NR_135305, intron 1 of 13)	22957	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
48997	chr12	13278201	13278550	+	0	NA	Intergenic	Intergenic	81649	NM_001423	2012		NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
32971	chr10	110497281	110498880	+	0	NA	5' UTR (NM_004419, exon 1 of 4)	5' UTR (NM_004419, exon 1 of 4)	173	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
171217	chr3	195762401	195762780	+	0	NA	intron (NM_018406, intron 13 of 24)	CpG-20609	41612	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
4841	chr1	23665051	23665430	+	0	NA	Intergenic	Intergenic	-26539	NM_001199802	6135		NM_000975	ENSG00000142676	RPL11	DBA7|GIG34|L11|uL5	ribosomal protein L11	protein-coding
193082	chr6	28837001	28838000	+	0	NA	Intergenic	Intergenic	26177	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
92201	chr17	7848451	7848830	+	0	NA	exon (NM_001080424, exon 11 of 22)	exon (NM_001080424, exon 11 of 22)	-6426	NM_203411	92162		NM_203411	ENSG00000167874	TMEM88	-	transmembrane protein 88	protein-coding
130930	chr2	87491951	87492400	+	0	NA	intron (NR_146461, intron 2 of 2)	MLT1K|LTR|ERVL-MaLR	22225	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
32302	chr10	102146251	102147180	+	0	NA	exon (NM_001288728, exon 9 of 14)	exon (NM_001288728, exon 9 of 14)	-5461	NM_001284388	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
198733	chr6	108297601	108298300	+	0	NA	intron (NR_136553, intron 1 of 8)	MIRb|SINE|MIR	2896	NM_145315	246269		NM_145315	ENSG00000135537	AFG1L	AFG1|LACE1|c222389	AFG1 like ATPase	protein-coding
141579	chr2	241602071	241602430	+	0	NA	intron (NM_001164356, intron 3 of 4)	intron (NM_001164356, intron 3 of 4)	15251	NM_001164356	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
33787	chr10	123135351	123136400	+	0	NA	promoter-TSS (NM_001105574)	promoter-TSS (NM_001105574)	-95	NM_001105574	340784		NM_001105574	ENSG00000188620	HMX3	NKX-5.1|NKX5.1|Nkx5-1	H6 family homeobox 3	protein-coding
43719	chr11	86046201	86046400	+	0	NA	intron (NM_001206947, intron 1 of 18)	MIRc|SINE|MIR	22784	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
178287	chr4	145096571	145097080	+	0	NA	intron (NM_001256708, intron 1 of 4)	FLAM_A|SINE|Alu	557	NM_001318367	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
203160	chr6	167047001	167047930	+	0	NA	3' UTR (NM_007045, exon 13 of 13)	3' UTR (NM_007045, exon 13 of 13)	48068	NM_194429	11116		NM_007045	ENSG00000213066	CEP43	FGFR1OP|FOP	centrosomal protein 43	protein-coding
101857	chr17	74206071	74206880	+	0	NA	intron (NM_000999, intron 3 of 4)	L1MB3|LINE|L1	2797	NM_001035258	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
231859	chr9	132880921	132881180	+	0	NA	intron (NM_018956, intron 1 of 4)	AluY|SINE|Alu	-2004	NM_001371771	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
128036	chr2	47388301	47388580	+	0	NA	Intergenic	LTR41|LTR|ERVL	10765	NR_030286	693144		NR_030286	ENSG00000207923	MIR559	MIRN559|hsa-mir-559	microRNA 559	ncRNA
103666	chr17	78786401	78786800	+	0	NA	TTS (NM_001385169)	TTS (NM_001385169)	-4258	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
205991	chr7	26187301	26189780	+	0	NA	Intergenic	Intergenic	12206	NM_002137	3181		NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|OPMD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding
84554	chr16	30569951	30570350	+	0	NA	exon (NM_145271, exon 3 of 3)	exon (NM_145271, exon 3 of 3)	2257	NM_145271	146542		NM_145271	ENSG00000229809	ZNF688	-	zinc finger protein 688	protein-coding
118356	chr19	35647171	35647350	+	0	NA	Intergenic	AluSp|SINE|Alu	-1063	NM_001863	1340		NM_001863	ENSG00000126267	COX6B1	COX6B|COXG|COXVIb1|MC4DN7	cytochrome c oxidase subunit 6B1	protein-coding
220364	chr8	99857771	99858130	+	0	NA	intron (NM_152564, intron 56 of 61)	intron (NM_152564, intron 56 of 61)	35757	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
116545	chr19	18210601	18211000	+	0	NA	3' UTR (NM_001369701, exon 14 of 14)	3' UTR (NM_001369701, exon 14 of 14)	6070	NR_134910	102725254		NR_134910	ENSG00000268650	LOC102725254	-	uncharacterized LOC102725254	ncRNA
124472	chr19	58542201	58542850	+	0	NA	promoter-TSS (NM_001316980)	promoter-TSS (NM_001316980)	-813	NM_001316980	84878		NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding
79621	chr16	1102151	1102250	+	0	NA	Intergenic	Intergenic	-5956	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
172103	chr4	1058251	1058550	+	0	NA	intron (NM_001366919, intron 9 of 11)	intron (NM_001366919, intron 9 of 11)	45936	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
62982	chr13	112300501	112300700	+	0	NA	Intergenic	Intergenic	-12867	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
44948	chr11	116786321	116786630	+	0	NA	intron (NM_001317086, intron 3 of 12)	intron (NM_001317086, intron 3 of 12)	1548	NM_003904	8882		NM_003904	ENSG00000109917	ZPR1	GKAF|ZNF259	ZPR1 zinc finger	protein-coding
45033	chr11	117029071	117029830	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJb|SINE|Alu	68978	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
170780	chr3	188914821	188915380	+	0	NA	Intergenic	Intergenic	32539	NR_046873	100874043		NR_046873		TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
89518	chr16	89173071	89173300	+	0	NA	intron (NM_004933, intron 1 of 13)	intron (NM_004933, intron 1 of 13)	1437	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
99335	chr17	49848971	49849400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1168	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
143599	chr20	31700551	31700850	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-20807	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
167631	chr3	129596701	129597180	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	9736	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
1062	chr1	1905071	1905230	+	0	NA	Intergenic	AluSx|SINE|Alu	-10110	NM_001330313	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
226722	chr9	75185551	75186100	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	97311	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
64523	chr14	24429451	24430600	+	0	NA	promoter-TSS (NM_001290257)	promoter-TSS (NM_001290257)	71	NM_015299	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
206077	chr7	27179621	27180580	+	0	NA	promoter-TSS (NR_037939)	promoter-TSS (NR_037939)	161	NR_037940	100534589		NR_037940		HOXA10-HOXA9	-	HOXA10-HOXA9 readthrough	ncRNA
136079	chr2	173149531	173150430	+	0	NA	intron (NM_133646, intron 2 of 11)	intron (NM_133646, intron 2 of 11)	74134	NM_016653	51776		NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
221530	chr8	124673151	124673650	+	0	NA	intron (NM_001363300, intron 3 of 12)	AluSx1|SINE|Alu	55073	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
203019	chr6	163459351	163459730	+	0	NA	intron (NM_206854, intron 2 of 6)	intron (NM_206854, intron 2 of 6)	44822	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
133017	chr2	111727701	111728000	+	0	NA	Intergenic	Intergenic	43284	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
9036	chr1	44783921	44785350	+	0	NA	exon (NM_153274, exon 8 of 9)	exon (NM_153274, exon 8 of 9)	3535	NM_153274	266675		NM_153274	ENSG00000142959	BEST4	VMD2L2	bestrophin 4	protein-coding
164880	chr3	71083751	71084280	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	-19091	NM_001244813	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
112155	chr19	5627401	5627980	+	0	NA	intron (NM_001320571, intron 2 of 18)	intron (NM_001320571, intron 2 of 18)	4607	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
176299	chr4	87358021	87358150	+	0	NA	intron (NM_016245, intron 4 of 6)	AluY|SINE|Alu	33103	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
31724	chr10	97688501	97688700	+	0	NA	Intergenic	Intergenic	-1359	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
120133	chr19	42205701	42206380	+	0	NA	intron (NR_073046, intron 3 of 4)	AluJb|SINE|Alu	11637	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
8419	chr1	40449751	40450590	+	0	NA	promoter-TSS (NM_023070)	promoter-TSS (NM_023070)	106	NM_001369565	65243		NM_023070	ENSG00000187801	ZFP69B	ZKSCAN23B|ZNF643|ZSCAN54B	ZFP69 zinc finger protein B	protein-coding
89382	chr16	88800001	88800800	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-3389	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
213503	chr7	139061351	139061730	+	0	NA	intron (NM_020119, intron 8 of 12)	intron (NM_020119, intron 8 of 12)	-17383	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
101351	chr17	67139201	67139400	+	0	NA	intron (NM_001330447, intron 21 of 32)	intron (NM_001330447, intron 21 of 32)	94746	NM_000727	786		NM_000727	ENSG00000108878	CACNG1	CACNLG	calcium voltage-gated channel auxiliary subunit gamma 1	protein-coding
209729	chr7	87155001	87155200	+	0	NA	intron (NM_021145, intron 3 of 19)	intron (NM_021145, intron 3 of 19)	2546	NM_021145	9988		NM_021145	ENSG00000135164	DMTF1	DMP1|DMTF|MRUL|hDMP1	cyclin D binding myb like transcription factor 1	protein-coding
139727	chr2	229775501	229776430	+	0	NA	intron (NM_001348327, intron 37 of 41)	(CAAA)n|Simple_repeat|Simple_repeat	-61410	NM_139072	92737		NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch like EGF repeat containing	protein-coding
106274	chr18	12477551	12477850	+	0	NA	intron (NM_001128626, intron 10 of 16)	L2c|LINE|L2	44926	NR_136514	105371998		NR_136514		LOC105371998	-	uncharacterized LOC105371998	ncRNA
156470	chr22	41258101	41258900	+	0	NA	intron (NM_001278651, intron 7 of 16)	intron (NM_001278651, intron 7 of 16)	-5450	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
233214	chr9	137230071	137230530	+	0	NA	promoter-TSS (NM_001177317)	promoter-TSS (NM_001177317)	-457	NM_001177317	142680		NM_080877	ENSG00000198569	SLC34A3	HHRH|NPT2C|NPTIIc	solute carrier family 34 member 3	protein-coding
41746	chr11	66680671	66680830	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2863	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
40048	chr11	62713671	62714100	+	0	NA	3' UTR (NM_001079559, exon 14 of 14)	3' UTR (NM_001079559, exon 14 of 14)	-4266	NR_037949								
73996	chr15	52040121	52040580	+	0	NA	intron (NM_002748, intron 1 of 5)	intron (NM_002748, intron 1 of 5)	21131	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
62791	chr13	109215521	109215780	+	0	NA	Intergenic	Intergenic	-48347	NR_047700	100885782		NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
44771	chr11	112281651	112281750	+	0	NA	intron (NR_126004, intron 1 of 3)	MLT1M|LTR|ERVL-MaLR	10951	NR_126004	283140		NR_126004	ENSG00000250303	LINC02762	-	long intergenic non-protein coding RNA 2762	ncRNA
190319	chr5	179615801	179616750	+	0	NA	intron (NM_001364248, intron 10 of 12).2	intron (NM_001364248, intron 10 of 12).2	7126	NM_001364239	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
129977	chr2	73997071	73997430	+	0	NA	intron (NM_001287491, intron 2 of 11)	intron (NM_001287491, intron 2 of 11)	-5442	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
5509	chr1	25771351	25772030	+	0	NA	exon (NM_001289010, exon 8 of 12)	exon (NM_001289010, exon 8 of 12)	-28503	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
160932	chr3	36881351	36881450	+	0	NA	intron (NM_014831, intron 7 of 22)	AluSx|SINE|Alu	-58900	NR_147141	105377031		NR_147141	ENSG00000279727	LINC02033	-	long intergenic non-protein coding RNA 2033	ncRNA
103283	chr17	77783901	77785280	+	0	NA	Intergenic	LTR39|LTR|ERV1	-56031	NR_104134	100132174		NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
194817	chr6	34269171	34269330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-20142	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
39530	chr11	61095051	61095400	+	0	NA	intron (NM_001346456, intron 1 of 10)	HERVE_a-int|LTR|ERV1	1262	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
236972	chrX	101396621	101396880	+	0	NA	TTS (NM_021029)	TTS (NM_021029)	5739	NM_021029	6173		NM_021029	ENSG00000241343	RPL36A	L36A|L44L|MIG6|RPL44|eL42	ribosomal protein L36a	protein-coding
3059	chr1	12166771	12168480	+	0	NA	TTS (NR_107000)	TTS (NR_107000)	634	NM_001066	7133		NM_001066	ENSG00000028137	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	TNF receptor superfamily member 1B	protein-coding
83402	chr16	27179371	27180180	+	0	NA	Intergenic	L2b|LINE|L2	-23751	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
11345	chr1	89604421	89605200	+	0	NA	Intergenic	L2a|LINE|L2	28084	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
146471	chr20	49724901	49725200	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-11172	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
103912	chr17	79819121	79819550	+	0	NA	Intergenic	L2c|LINE|L2	-4117	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
124	chr1	501321	501580	+	0	NA	Intergenic	L2b|LINE|L2	-6005	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
18016	chr1	160564751	160565700	+	0	NA	intron (NM_001184882, intron 1 of 5)	MIRc|SINE|MIR	14271	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
140643	chr2	233477801	233478000	+	0	NA	intron (NM_001382296, intron 32 of 32)	intron (NM_001382296, intron 32 of 32)	11998	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
59059	chr13	20711851	20711950	+	0	NA	intron (NM_001385224, intron 1 of 1)	intron (NM_001385224, intron 1 of 1)	8201	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
238778	chrX	154363351	154363450	+	0	NA	intron (NM_001110556, intron 15 of 47)	AluSp|SINE|Alu	11234	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
94596	chr17	29727671	29727830	+	0	NA	intron (NM_033389, intron 2 of 14)	L1MA3|LINE|L1	33682	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
122561	chr19	49660821	49661630	+	0	NA	intron (NM_001197122, intron 6 of 7)	MER3|DNA|hAT-Charlie	-3917	NM_001282519	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
108562	chr18	74942301	74942700	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	263013	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
208251	chr7	65562651	65562750	+	0	NA	Intergenic	Intergenic	-7635	NR_157838	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
134750	chr2	144972001	144972200	+	0	NA	intron (NR_033870, intron 3 of 4)	intron (NR_033870, intron 3 of 4)	304133	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
222252	chr8	133234221	133234480	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	43311	NM_080838	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
167709	chr3	130895871	130896330	+	0	NA	intron (NM_001001487, intron 2 of 28)	intron (NM_001001487, intron 2 of 28)	1550	NM_014382	27032		NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
190013	chr5	177481601	177481800	+	0	NA	Intergenic	AluJb|SINE|Alu	-8066	NM_001364151	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
29204	chr10	68983921	68984580	+	0	NA	3' UTR (NM_001256910, exon 15 of 15)	3' UTR (NM_001256910, exon 15 of 15)	-4553	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
133230	chr2	113197571	113198030	+	0	NA	exon (NM_012455, exon 14 of 17)	exon (NM_012455, exon 14 of 17)	23829	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
192315	chr6	21666201	21666600	+	0	NA	promoter-TSS (NR_015410)	promoter-TSS (NR_015410)	-13	NR_015410	401237		NR_015410		CASC15	CANT|LINC00340|lnc-SOX4-1	cancer susceptibility 15	ncRNA
197950	chr6	89946501	89946900	+	0	NA	intron (NM_021813, intron 7 of 8)	intron (NM_021813, intron 7 of 8)	52231	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
177307	chr4	109648071	109649270	+	0	NA	intron (NM_017918, intron 1 of 7)	intron (NM_017918, intron 1 of 7)	54775	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
56933	chr12	120456471	120456630	+	0	NA	intron (NR_033684, intron 3 of 4)	L2c|LINE|L2	10106	NR_033684	283459		NM_176818	ENSG00000257218	GATC	15E1.2|COXPD42	glutamyl-tRNA amidotransferase subunit C	protein-coding
141546	chr2	241352271	241352630	+	0	NA	3' UTR (NM_006155, exon 13 of 13)	3' UTR (NM_006155, exon 13 of 13)	-3835	NM_001282984	9855		NM_014808	ENSG00000006607	FARP2	FIR|FRG|PLEKHC3	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein-coding
85765	chr16	56870421	56870680	+	0	NA	intron (NM_001126107, intron 5 of 25)	intron (NM_001126107, intron 5 of 25)	5343	NM_001126108	6559		NM_000339	ENSG00000070915	SLC12A3	NCC|NCCT|TSC	solute carrier family 12 member 3	protein-coding
109744	chr19	1108151	1109000	+	0	NA	exon (NM_014963, exon 32 of 32)	exon (NM_014963, exon 32 of 32)	3925	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
24261	chr1	236398621	236399000	+	0	NA	intron (NM_080738, intron 1 of 5)	L2b|LINE|L2	3397	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
28430	chr10	48319351	48320150	+	0	NA	intron (NM_001323331, intron 2 of 12)	AluSx1|SINE|Alu	13073	NM_001323320	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
71422	chr14	105581521	105581780	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-39466	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
92886	chr17	16434551	16435750	+	0	NA	intron (NM_016113, intron 14 of 14)	intron (NM_016113, intron 14 of 14)	-3837	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
189473	chr5	173069651	173069950	+	0	NA	intron (NM_001168393, intron 1 of 3)	intron (NM_001168393, intron 1 of 3)	13448	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
67534	chr14	71022171	71022530	+	0	NA	intron (NM_014982, intron 12 of 35)	intron (NM_014982, intron 12 of 35)	114891	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
72931	chr15	40421421	40422600	+	0	NA	TTS (NM_001354597)	TTS (NM_001354597)	16215	NM_001159508	3712		NM_002225	ENSG00000128928	IVD	ACAD2|IVDH	isovaleryl-CoA dehydrogenase	protein-coding
97870	chr17	45023821	45024330	+	0	NA	3' UTR (NM_001288655, exon 5 of 5)	3' UTR (NM_001288655, exon 5 of 5)	27557	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
63736	chr14	21220051	21220580	+	0	NA	intron (NM_001077443, intron 4 of 7)	AluSq2|SINE|Alu	-13415	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
20479	chr1	198629121	198630150	+	0	NA	Intergenic	L2c|LINE|L2	-9333	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
197600	chr6	80637451	80637550	+	0	NA	Intergenic	MIR|SINE|MIR	530829	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
95319	chr17	35589471	35590250	+	0	NA	intron (NM_001282, intron 1 of 20)	intron (NM_001282, intron 1 of 20)	2538	NM_001030006	163		NM_001282	ENSG00000006125	AP2B1	ADTB2|AP105B|AP2-BETA|CLAPB1	adaptor related protein complex 2 subunit beta 1	protein-coding
91311	chr17	4333601	4334200	+	0	NA	intron (NM_003342, intron 1 of 5)	Charlie25|DNA|hAT-Charlie	32774	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
181448	chr5	41856601	41857430	+	0	NA	intron (NR_157114, intron 3 of 15)	L2|LINE|L2	-13015	NR_046635	100874002		NR_046635	ENSG00000248668	OXCT1-AS1	SARRAH	OXCT1 antisense RNA 1	ncRNA
188645	chr5	157232371	157232530	+	0	NA	intron (NM_005546, intron 8 of 16)	AluJr|SINE|Alu	-33673	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
85790	chr16	56949051	56949550	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-12650	NM_001286085	1071		NM_000078	ENSG00000087237	CETP	BPIFF|HDLCQ10	cholesteryl ester transfer protein	protein-coding
120716	chr19	45266371	45266730	+	0	NA	intron (NM_001199867, intron 7 of 16)	intron (NM_001199867, intron 7 of 16)	15279	NM_031417	57787		NM_031417	ENSG00000007047	MARK4	MARK4L|MARK4S|MARKL1|MARKL1L|PAR-1D	microtubule affinity regulating kinase 4	protein-coding
31212	chr10	91313771	91313930	+	0	NA	intron (NR_024467, intron 4 of 4)	intron (NR_024467, intron 4 of 4)	93187	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
109643	chr19	1001521	1002530	+	0	NA	intron (NM_138690, intron 1 of 8)	intron (NM_138690, intron 1 of 8)	1606	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
54331	chr12	89657471	89658030	+	0	NA	intron (NM_001366524, intron 1 of 21)	MER5A|DNA|hAT-Charlie	51088	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
46417	chr11	126416321	126416930	+	0	NA	Intergenic	CpG	10538	NM_001254759	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
36489	chr11	6353451	6353830	+	0	NA	Intergenic	Intergenic	-33139	NM_145040	112464		NM_145040	ENSG00000170955	CAVIN3	HSRBC|PRKCDBP|SRBC|cavin-3	caveolae associated protein 3	protein-coding
151829	chr22	18418901	18419380	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-2244	NR_165629	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
24592	chr1	245952571	245952800	+	0	NA	intron (NM_001375963, intron 5 of 11)	intron (NM_001375963, intron 5 of 11)	35866	NM_001375965	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
4699	chr1	23110451	23112000	+	0	NA	intron (NM_033631, intron 1 of 4)	intron (NM_033631, intron 1 of 4)	57631	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
108475	chr18	70659071	70660300	+	0	NA	Intergenic	Intergenic	-8731	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
101678	chr17	68352951	68353700	+	0	NA	intron (NM_001352901, intron 5 of 11)	MIRb|SINE|MIR	-60298	NM_001278433	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
128584	chr2	60913271	60913630	+	0	NA	intron (NM_001291746, intron 4 of 9)	L1MEg|LINE|L1	31876	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133384	chr2	118142421	118142900	+	0	NA	Intergenic	L1PA2|LINE|L1	43726	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
207556	chr7	44853201	44853700	+	0	NA	Intergenic	AluJo|SINE|Alu	-5324	NM_138635	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
34366	chr10	132248821	132249630	+	0	NA	promoter-TSS (NR_134911)	promoter-TSS (NR_134911)	-117	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
86841	chr16	67923771	67923930	+	0	NA	intron (NM_006742, intron 2 of 2)	intron (NM_006742, intron 2 of 2)	8012	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
140744	chr2	234481621	234481880	+	0	NA	Intergenic	L1MB7|LINE|L1	15299	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
22882	chr1	225791321	225791780	+	0	NA	Intergenic	AluY|SINE|Alu	13724	NM_003133	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
228928	chr9	113219021	113219280	+	0	NA	intron (NM_015258, intron 1 of 27)	intron (NM_015258, intron 1 of 27)	2127	NM_015258	23307		NM_015258	ENSG00000119321	FKBP15	FKBP133|KIAA0674|PPP1R76	FKBP prolyl isomerase family member 15	protein-coding
37079	chr11	12716201	12716400	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	41879	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
116321	chr19	17821101	17821500	+	0	NA	intron (NM_001265587, intron 1 of 2)	CpG	219	NM_005543	3640		NM_005543	ENSG00000248099	INSL3	RLF|RLNL|ley-I-L	insulin like 3	protein-coding
229238	chr9	114957971	114958650	+	0	NA	Intergenic	Intergenic	-27715	NM_001252290	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
86148	chr16	57740421	57740680	+	0	NA	intron (NM_005886, intron 2 of 19)	intron (NM_005886, intron 2 of 19)	4780	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
203313	chr6	170149301	170149930	+	0	NA	Intergenic	Intergenic	-11027	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
110159	chr19	1645301	1645500	+	0	NA	intron (NM_003200, intron 3 of 18)	intron (NM_003200, intron 3 of 18)	7215	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
947	chr1	1742471	1742630	+	0	NA	intron (NM_182838, intron 1 of 5)	intron (NM_182838, intron 1 of 5)	3449	NM_182838	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
121514	chr19	47191421	47191880	+	0	NA	intron (NM_001145713, intron 6 of 6)	intron (NM_001145713, intron 6 of 6)	-35292	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
136373	chr2	176105701	176106030	+	0	NA	Intergenic	Intergenic	-1415	NM_021192	3237		NM_021192	ENSG00000128713	HOXD11	HOX4|HOX4F	homeobox D11	protein-coding
237443	chrX	119684121	119684650	+	0	NA	intron (NM_145799, intron 1 of 10)	intron (NM_145799, intron 1 of 10)	8783	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
183469	chr5	79248271	79249150	+	0	NA	intron (NM_152405, intron 1 of 10)	intron (NM_152405, intron 1 of 10)	12579	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
224784	chr9	22065271	22065900	+	0	NA	intron (NR_047541, intron 5 of 5)	intron (NR_047541, intron 5 of 5)	-56272	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
135720	chr2	169141821	169142100	+	0	NA	intron (NM_004525, intron 71 of 78)	intron (NM_004525, intron 71 of 78)	60853	NM_001142271	10170		NM_005771	ENSG00000073737	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4|hRoDH-E2	dehydrogenase/reductase 9	protein-coding
188173	chr5	150482071	150482230	+	0	NA	intron (NR_105061, intron 2 of 2)	intron (NR_105061, intron 2 of 2)	3842	NR_105061	102546298		NR_105061	ENSG00000254333	NDST1-AS1	-	NDST1 antisense RNA 1	ncRNA
69328	chr14	93330951	93331280	+	0	NA	intron (NM_018167, intron 1 of 3).2	intron (NM_018167, intron 1 of 3).2	1921	NM_018167	55727		NM_018167	ENSG00000011114	BTBD7	FUP1	BTB domain containing 7	protein-coding
67255	chr14	69048421	69048800	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	68928	NR_073422	161159		NR_073422	ENSG00000259062	ACTN1-DT	ACTN1-AS1|C14orf84	ACTN1 divergent transcript	ncRNA
25120	chr10	3980501	3981350	+	0	NA	Intergenic	Intergenic	-10235	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
219749	chr8	81078001	81078200	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	33968	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
82928	chr16	21832821	21833280	+	0	NA	Intergenic	AluJr|SINE|Alu	-12565	NM_001301064	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
140175	chr2	231657721	231658030	+	0	NA	Intergenic	Intergenic	-50650	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
30722	chr10	82349551	82349650	+	0	NA	intron (NM_001370082, intron 3 of 10)	L1PA2|LINE|L1	-116680	NR_120666	101929590		NR_120666	ENSG00000225738	NRG3-AS1	C10orf100|Em:AC010157.1	NRG3 antisense RNA 1	ncRNA
58361	chr12	131663001	131663280	+	0	NA	Intergenic	Intergenic	-15019	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
139358	chr2	219684951	219685450	+	0	NA	Intergenic	MER61B|LTR|ERV1	57570	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
38336	chr11	44551851	44552150	+	0	NA	Intergenic	(TGA)n|Simple_repeat|Simple_repeat	-13663	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
160497	chr3	30623101	30624380	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	17139	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
128209	chr2	53987651	53987750	+	0	NA	intron (NM_001320587, intron 2 of 5)	L1MD|LINE|L1	16587	NM_001320587	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
202980	chr6	161279071	161279230	+	0	NA	Intergenic	AluY|SINE|Alu	-5089	NM_020133	56895		NM_020133	ENSG00000026652	AGPAT4	1-AGPAT4|LPAAT-delta|LPAAT4|LPLAT4|dJ473J16.2	1-acylglycerol-3-phosphate O-acyltransferase 4	protein-coding
226486	chr9	71758251	71759650	+	0	NA	intron (NM_001135820, intron 1 of 22)	intron (NM_001135820, intron 1 of 22)	9563	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
84313	chr16	30114471	30114630	+	0	NA	3' UTR (NM_001109891, exon 8 of 8)	3' UTR (NM_001109891, exon 8 of 8)	-1013	NM_024307	79153		NM_024307	ENSG00000102886	GDPD3	GDE7	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding
71525	chr14	106164851	106165150	+	0	NA	Intergenic	Intergenic	-122674	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
37995	chr11	35046951	35048050	+	0	NA	Intergenic	Intergenic	90532	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
160836	chr3	33065871	33066030	+	0	NA	intron (NM_001135602, intron 2 of 12)	AluSp|SINE|Alu	30882	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
213030	chr7	131035151	131035250	+	0	NA	intron (NR_109850, intron 3 of 5)	AluSx1|SINE|Alu	71830	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
103531	chr17	78592321	78592830	+	0	NA	Intergenic	Intergenic	-15179	NM_173628	8632		NM_003727	ENSG00000187775	DNAH17	DNAHL1|DNEL2|SPGF39	dynein axonemal heavy chain 17	protein-coding
200154	chr6	130396751	130397180	+	0	NA	intron (NM_001258277, intron 2 of 2)	L1ME3Cz|LINE|L1	-24131	NM_001258278	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
53737	chr12	68636271	68636750	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluJr4|SINE|Alu	-9135	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
132332	chr2	105426621	105427250	+	0	NA	intron (NM_001374399, intron 1 of 6)	intron (NM_001374399, intron 1 of 6)	11578	NM_001318897	2274		NM_001450	ENSG00000115641	FHL2	AAG11|DRAL|FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
95257	chr17	35460411	35461530	+	0	NA	Intergenic	L1MDa|LINE|L1	-12204	NM_144682	146857		NM_144682	ENSG00000154760	SLFN13	SLFN10|hSLFN13	schlafen family member 13	protein-coding
24801	chr10	73671	74450	+	0	NA	Intergenic	CpG	-24764	NM_177987	347688		NM_177987	ENSG00000261456	TUBB8	OOMD|OOMD2|OZEMA2|bA631M21.2	tubulin beta 8 class VIII	protein-coding
24495	chr1	244429801	244430000	+	0	NA	intron (NM_001365073, intron 4 of 12)	AluSz6|SINE|Alu	22009	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
160511	chr3	30637001	30637200	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	30499	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
148345	chr20	63824551	63825000	+	0	NA	intron (NM_001369741, intron 1 of 4)	intron (NM_001369741, intron 1 of 4)	6489	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
238550	chrX	153780201	153780400	+	0	NA	promoter-TSS (NM_001170761)	promoter-TSS (NM_001170761)	-701	NM_001170761	26576		NM_014370	ENSG00000184343	SRPK3	MSSK-1|MSSK1|STK23	SRSF protein kinase 3	protein-coding
176434	chr4	89272901	89273100	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	34800	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
223350	chr8	143855901	143857030	+	0	NA	TTS (NM_031308)	TTS (NM_031308)	-15492	NM_178564	340371		NM_178564	ENSG00000185189	NRBP2	TRG16|pp9320	nuclear receptor binding protein 2	protein-coding
224683	chr9	21235751	21236250	+	0	NA	Intergenic	Intergenic	4005	NM_002172	3448		NM_002172	ENSG00000228083	IFNA14	IFN-alphaH|LEIF2H	interferon alpha 14	protein-coding
236876	chrX	81202801	81203000	+	0	NA	promoter-TSS (NM_030763)	promoter-TSS (NM_030763)	798	NM_003022	6451		NM_003022	ENSG00000131171	SH3BGRL	HEL-S-115|SH3BGR	SH3 domain binding glutamate rich protein like	protein-coding
204762	chr7	5600521	5600850	+	0	NA	intron (NM_003088, intron 1 of 4)	AluY|SINE|Alu	7869	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
221003	chr8	115667201	115667800	+	0	NA	intron (NM_001282903, intron 1 of 6)	CpG	513	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
148870	chr21	8438001	8439000	+	0	NA	non-coding (NR_146146, exon 1 of 1).3	non-coding (NR_146146, exon 1 of 1).3	-1322	NR_003285	100008587		NR_003285		RNA5-8SN5	RN5-8S1|RNA5-8S5	RNA, 5.8S ribosomal N5	rRNA
29864	chr10	72368801	72369000	+	0	NA	intron (NM_006077, intron 11 of 11)	L2b|LINE|L2	-13981	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
134578	chr2	144238871	144239030	+	0	NA	intron (NM_001354354, intron 1 of 12)	intron (NM_001354354, intron 1 of 12)	-1611	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
103816	chr17	79098201	79098400	+	0	NA	intron (NM_001082575, intron 9 of 14)	intron (NM_001082575, intron 9 of 14)	23476	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
146556	chr20	49991401	49992350	+	0	NA	Intergenic	L1MC5a|LINE|L1	8895	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
161109	chr3	38190671	38191030	+	0	NA	intron (NM_005109, intron 3 of 17)	intron (NM_005109, intron 3 of 17)	25313	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
86911	chr16	68072351	68072980	+	0	NA	intron (NM_001271763, intron 10 of 14)	intron (NM_001271763, intron 10 of 14)	-12705	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
37960	chr11	34633921	34634500	+	0	NA	intron (NM_001206616, intron 1 of 8)	intron (NM_001206616, intron 1 of 8)	1644	NM_001206616	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
158871	chr3	9859701	9859900	+	0	NA	Intergenic	Intergenic	-15741	NM_001351737	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
99153	chr17	49358151	49359250	+	0	NA	intron (NR_135579, intron 1 of 7)	intron (NR_135579, intron 1 of 7)	-2465	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
174736	chr4	43448751	43449250	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	43543	NR_146993	105374436		NR_146993	ENSG00000248143	LINC02383	-	long intergenic non-protein coding RNA 2383	ncRNA
6638	chr1	28929351	28929680	+	0	NA	intron (NM_001376013, intron 1 of 20)	AluYk3|SINE|Alu	14939	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
113387	chr19	9139771	9141030	+	0	NA	promoter-TSS (NM_020933)	promoter-TSS (NM_020933)	3	NR_102435	57693		NM_020933	ENSG00000130803	ZNF317	-	zinc finger protein 317	protein-coding
162766	chr3	49068901	49069100	+	0	NA	intron (NM_001320580, intron 3 of 10)	Charlie6|DNA|hAT-Charlie	24632	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
10859	chr1	77975301	77975800	+	0	NA	intron (NR_146539, intron 1 of 22)	intron (NR_146539, intron 1 of 22)	3522	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
109175	chr19	340771	341250	+	0	NA	intron (NM_017550, intron 1 of 13)	intron (NM_017550, intron 1 of 13)	3831	NM_001346105	54531		NM_017550	ENSG00000105556	MIER2	KIAA1193|Mi-er2	MIER family member 2	protein-coding
180343	chr5	6715871	6717250	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	3128	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
28231	chr10	45423601	45424000	+	0	NA	intron (NM_001256153, intron 4 of 13).2	intron (NM_001256153, intron 4 of 13).2	29321	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
24460	chr1	243850101	243851750	+	0	NA	promoter-TSS (NM_005465)	promoter-TSS (NM_005465)	154	NM_001370074	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
9675	chr1	52726001	52727330	+	0	NA	exon (NM_024646, exon 1 of 14)	exon (NM_024646, exon 1 of 14)	212	NM_024646	79699		NM_024646	ENSG00000162378	ZYG11B	ZYG11	zyg-11 family member B, cell cycle regulator	protein-coding
125970	chr2	25253471	25253630	+	0	NA	intron (NR_135490, intron 6 of 23)	intron (NR_135490, intron 6 of 23)	-1235	NM_153759	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
182045	chr5	55888201	55888400	+	0	NA	intron (NM_001297572, intron 5 of 10)	intron (NM_001297572, intron 5 of 10)	34978	NM_001242639	133396		NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R|zcytoR17	interleukin 31 receptor A	protein-coding
180227	chr5	1538051	1538600	+	0	NA	Intergenic	Intergenic	-14365	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
197264	chr6	70567951	70568050	+	0	NA	intron (NM_145267, intron 1 of 2)	intron (NM_145267, intron 1 of 2)	1070	NM_145267	135154		NM_145267	ENSG00000154079	SDHAF4	C6orf57|Sdh8	succinate dehydrogenase complex assembly factor 4	protein-coding
192586	chr6	25961921	25963650	+	0	NA	promoter-TSS (NM_006355)	promoter-TSS (NM_006355)	-17	NM_006355	10475		NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding
194305	chr6	32807201	32807630	+	0	NA	Intergenic	L1PA13|LINE|L1	9587	NM_002120	3112		NM_002120	ENSG00000241106	HLA-DOB	DOB|HLA_DOB	major histocompatibility complex, class II, DO beta	protein-coding
173256	chr4	7036951	7037050	+	0	NA	intron (NR_033828, intron 2 of 3)	AluSx3|SINE|Alu	6001	NM_153376	257236		NM_153376	ENSG00000173013	CFAP184	CCDC96	cilia and flagella associated protein 184	protein-coding
24108	chr1	235513521	235514350	+	0	NA	Intergenic	Intergenic	-9483	NM_152490	148789		NM_152490	ENSG00000162885	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
225018	chr9	33135601	33136130	+	0	NA	intron (NM_001378495, intron 1 of 5)	MIRc|SINE|MIR	27173	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
186458	chr5	137751751	137752460	+	0	NA	3' UTR (NM_006805, exon 1 of 1)	3' UTR (NM_006805, exon 1 of 1)	2258	NM_006805	10949		NM_006805	ENSG00000177733	HNRNPA0	HNRPA0	heterogeneous nuclear ribonucleoprotein A0	protein-coding
41558	chr11	66322051	66322880	+	0	NA	Intergenic	AluSq|SINE|Alu	-5421	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
119724	chr19	41219821	41220750	+	0	NA	intron (NM_021913, intron 1 of 19)	intron (NM_021913, intron 1 of 19)	1062	NM_021913	558		NM_001699	ENSG00000167601	AXL	ARK|AXL3|JTK11|Tyro7|UFO	AXL receptor tyrosine kinase	protein-coding
192807	chr6	26599571	26600230	+	0	NA	3' UTR (NM_013375, exon 3 of 3)	3' UTR (NM_013375, exon 3 of 3)	2947	NM_013375	29777		NM_013375	ENSG00000146109	ABT1	Esf2|hABT1	activator of basal transcription 1	protein-coding
177815	chr4	123508601	123508900	+	0	NA	Intergenic	AluYc|SINE|Alu	109210	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
221309	chr8	123031001	123031200	+	0	NA	intron (NM_024295, intron 1 of 7)	intron (NM_024295, intron 1 of 7)	-5328	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
82364	chr16	15989901	15990100	+	0	NA	intron (NM_004996, intron 1 of 30)	FRAM|SINE|Alu	40384	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
163150	chr3	50150801	50151300	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-4008	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
2472	chr1	9661251	9661350	+	0	NA	intron (NM_005026, intron 1 of 23)	AluSx|SINE|Alu	-6714	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
68189	chr14	76647871	76648030	+	0	NA	Intergenic	Intergenic	-113518	NM_014909	22846		NM_014909	ENSG00000071246	VASH1	KIAA1036|TTCP 1	vasohibin 1	protein-coding
113014	chr19	7918821	7919080	+	0	NA	3' UTR (NM_001195259, exon 6 of 6)	3' UTR (NM_001195259, exon 6 of 6)	-1388	NM_003083	6618		NM_003083	ENSG00000104976	SNAPC2	PTFDELTA|SNAP45	small nuclear RNA activating complex polypeptide 2	protein-coding
153094	chr22	23460571	23460930	+	0	NA	Intergenic	Intergenic	26230	NR_110539	388882		NR_110539	ENSG00000178248	FAM230I	LINC01658	family with sequence similarity 230 member I	ncRNA
180192	chr5	1490401	1490800	+	0	NA	intron (NM_024830, intron 3 of 13)	MLT1C|LTR|ERVL-MaLR	20256	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
44111	chr11	96017421	96018050	+	0	NA	intron (NM_032427, intron 2 of 4)	L2a|LINE|L2	-93628	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
39041	chr11	47849651	47849980	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1271	NM_015231	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
162798	chr3	49103501	49103700	+	0	NA	intron (NM_001272073, intron 4 of 23)	intron (NM_001272073, intron 4 of 23)	1157	NR_073590	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
195409	chr6	36838201	36838600	+	0	NA	intron (NR_164866, intron 1 of 7)	intron (NR_164866, intron 1 of 7)	1044	NM_020939	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
98277	chr17	46208451	46208750	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluJr|SINE|Alu	15027	NR_034172	644246		NR_034172	ENSG00000214401	KANSL1-AS1	-	KANSL1 antisense RNA 1	ncRNA
147077	chr20	53814201	53815100	+	0	NA	Intergenic	AluY|SINE|Alu	61059	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
107255	chr18	41958371	41958530	+	0	NA	intron (NM_002647, intron 2 of 24)	intron (NM_002647, intron 2 of 24)	3216	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
64372	chr14	24135501	24138030	+	0	NA	intron (NM_176783, intron 1 of 9)	intron (NM_176783, intron 1 of 9)	571	NM_001281529	5720		NM_006263	ENSG00000092010	PSME1	HEL-S-129m|IFI5111|PA28A|PA28alpha|REGalpha	proteasome activator subunit 1	protein-coding
30214	chr10	74871771	74871930	+	0	NA	intron (NM_012330, intron 3 of 17).2	MIRc|SINE|MIR	-40936	NR_134476								
42392	chr11	68955251	68955680	+	0	NA	Intergenic	MIR|SINE|MIR	25521	NM_198923	116512		NM_198923	ENSG00000172938	MRGPRD	MRGD|TGR7	MAS related GPR family member D	protein-coding
15830	chr1	151340221	151341550	+	0	NA	3' UTR (NM_001379417, exon 11 of 11)	3' UTR (NM_001379417, exon 11 of 11)	5971	NM_001379416	5993		NM_000449	ENSG00000143390	RFX5	-	regulatory factor X5	protein-coding
180049	chr5	1075921	1076180	+	0	NA	intron (NM_006598, intron 14 of 23).2	intron (NM_006598, intron 14 of 23).2	-13076	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
64901	chr14	35397021	35398000	+	0	NA	Intergenic	Intergenic	7239	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
44818	chr11	113876771	113876930	+	0	NA	Intergenic	Intergenic	-1278	NM_001346252	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
92679	chr17	12861421	12861500	+	0	NA	intron (NM_014859, intron 1 of 20)	MLT1D|LTR|ERVL-MaLR	55882	NR_039747	100616494		NR_039747	ENSG00000265503	MIR1269B	-	microRNA 1269b	ncRNA
43668	chr11	85758071	85758230	+	0	NA	promoter-TSS (NM_001162953)	promoter-TSS (NM_001162953)	-81	NM_001162953	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
70424	chr14	102027471	102027830	+	0	NA	exon (NM_001376, exon 47 of 78)	exon (NM_001376, exon 47 of 78)	59394	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
38907	chr11	47417501	47417930	+	0	NA	Intergenic	Intergenic	8724	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
69964	chr14	99752371	99752850	+	0	NA	intron (NM_001375411, intron 1 of 21)	intron (NM_001375411, intron 1 of 21)	14888	NM_001375411	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
43377	chr11	77039521	77040400	+	0	NA	exon (NM_138706, exon 2 of 2)	exon (NM_138706, exon 2 of 2)	5562	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
178235	chr4	143189051	143189530	+	0	NA	intron (NM_032557, intron 2 of 9)	L1MEi|LINE|L1	4373	NM_032557	84640		NM_032557	ENSG00000170185	USP38	HP43.8KD	ubiquitin specific peptidase 38	protein-coding
232933	chr9	136904671	136905230	+	0	NA	intron (NM_021138, intron 4 of 10)	intron (NM_021138, intron 4 of 10)	18217	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
139671	chr2	226970401	226970600	+	0	NA	intron (NM_001349069, intron 8 of 8)	intron (NM_001349069, intron 8 of 8)	134446	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
179925	chr5	756451	757400	+	0	NA	intron (NM_001351303, intron 4 of 13)	intron (NM_001351303, intron 4 of 13)	27804	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
165895	chr3	106277251	106277550	+	0	NA	Intergenic	L2c|LINE|L2	-407999	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
119623	chr19	40788021	40788850	+	0	NA	intron (NR_037791, intron 7 of 11)	AluJr|SINE|Alu	10188	NM_016154	53916		NM_016154	ENSG00000167578	RAB4B	-	RAB4B, member RAS oncogene family	protein-coding
111632	chr19	4145651	4146050	+	0	NA	Intergenic	Intergenic	-7781	NM_001271997	84699		NM_032607	ENSG00000060566	CREB3L3	CREB-H|CREBH|HYST1481|HYTG2	cAMP responsive element binding protein 3 like 3	protein-coding
83505	chr16	27441371	27441530	+	0	NA	intron (NM_181078, intron 4 of 8)	intron (NM_181078, intron 4 of 8)	11943	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
18228	chr1	161035001	161035600	+	0	NA	Intergenic	Intergenic	3664	NM_001113207	100131187		NM_001113205	ENSG00000215845	TSTD1	KAT|TST	thiosulfate sulfurtransferase like domain containing 1	protein-coding
174113	chr4	36197921	36198580	+	0	NA	intron (NR_146894, intron 6 of 32)	MER52A|LTR|ERV1	45689	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
142179	chr20	2871821	2872900	+	0	NA	intron (NM_002836, intron 5 of 27)	CpG	-1121	NM_001385307	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
66303	chr14	61402321	61402580	+	0	NA	intron (NM_006255, intron 2 of 13)	Charlie1a|DNA|hAT-Charlie	81007	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
60001	chr13	32429471	32429650	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-1430	NM_001353628	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
213217	chr7	133230621	133230880	+	0	NA	Intergenic	Intergenic	-22317	NM_001037126	60412		NM_021807	ENSG00000131558	EXOC4	SEC8|SEC8L1|Sec8p	exocyst complex component 4	protein-coding
106341	chr18	13066951	13067250	+	0	NA	intron (NM_032142, intron 21 of 44)	MER2|DNA|TcMar-Tigger	75738	NM_032142	55125		NM_018069	ENSG00000101639	CEP192	PPP1R62	centrosomal protein 192	protein-coding
207471	chr7	44620771	44621530	+	0	NA	intron (NM_001363523, intron 1 of 23)	AluJr|SINE|Alu	14523	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
216279	chr8	12517201	12517400	+	0	NA	intron (NR_040091, intron 5 of 6)	intron (NR_040091, intron 5 of 6)	80287	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
24073	chr1	235318101	235318500	+	0	NA	intron (NM_016374, intron 2 of 23)	AluSg7|SINE|Alu	-8916	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
96006	chr17	39215221	39215480	+	0	NA	intron (NM_001351360, intron 4 of 10)	L2b|LINE|L2	10595	NM_198993	342667		NM_198993	ENSG00000141750	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
4050	chr1	19008321	19008400	+	0	NA	Intergenic	Intergenic	-51684	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
39610	chr11	61364871	61365230	+	0	NA	intron (NM_016464, intron 2 of 4)	AluSx|SINE|Alu	2676	NM_016464	51524		NM_016464	ENSG00000149483	TMEM138	HSPC196	transmembrane protein 138	protein-coding
171503	chr3	196624171	196624780	+	0	NA	Intergenic	L3|LINE|CR1	8112	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
170606	chr3	186965151	186965650	+	0	NA	intron (NM_173216, intron 2 of 7)	intron (NM_173216, intron 2 of 7)	34874	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
224298	chr9	6449221	6449830	+	0	NA	intron (NR_046386, intron 3 of 16)	intron (NR_046386, intron 3 of 16)	36326	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
92861	chr17	16379171	16379780	+	0	NA	Intergenic	AluSx|SINE|Alu	-1318	NM_001281716	7314		NM_018955	ENSG00000170315	UBB	HEL-S-50	ubiquitin B	protein-coding
147226	chr20	57401171	57401730	+	0	NA	intron (NM_001291780, intron 4 of 4)	intron (NM_001291780, intron 4 of 4)	-8394	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
122636	chr19	49831371	49831530	+	0	NA	promoter-TSS (NR_106858)	promoter-TSS (NR_106858)	-568	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
33464	chr10	119054851	119055150	+	0	NA	intron (NM_003750, intron 14 of 21)	AluSx1|SINE|Alu	5138	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
175518	chr4	74364421	74364680	+	0	NA	promoter-TSS (NM_001432)	promoter-TSS (NM_001432)	-595	NM_001432	2069		NM_001432	ENSG00000124882	EREG	EPR|ER|Ep	epiregulin	protein-coding
222130	chr8	132127921	132128180	+	0	NA	3' UTR (NM_001204824, exon 15 of 15)	3' UTR (NM_001204824, exon 15 of 15)	-22785	NM_001145095	10086		NM_005712	ENSG00000132297	HHLA1	PLA2L	HHLA1 neighbor of OC90	protein-coding
153406	chr22	24809321	24809580	+	0	NA	intron (NM_133454, intron 2 of 24)	intron (NM_133454, intron 2 of 24)	3229	NM_133454	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
106847	chr18	24048471	24048950	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-33250	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
236849	chrX	79270321	79270880	+	0	NA	Intergenic	Intergenic	96734	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
24286	chr1	236523121	236524100	+	0	NA	promoter-TSS (NM_201543)	promoter-TSS (NM_201543)	12	NM_201543	3964		NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
36983	chr11	11855101	11855500	+	0	NA	intron (NM_001372101, intron 1 of 26)	intron (NM_001372101, intron 1 of 26)	13328	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
170956	chr3	194438671	194439030	+	0	NA	intron (NR_164666, intron 16 of 32)	intron (NR_164666, intron 16 of 32)	29389	NM_024524	79572		NM_024524	ENSG00000133657	ATP13A3	AFURS1|PPH5	ATPase 13A3	protein-coding
43179	chr11	75397721	75397980	+	0	NA	Intergenic	L1ME2z|LINE|L1	-1641	NM_001260507	6188		NM_001005	ENSG00000149273	RPS3	S3|uS3	ribosomal protein S3	protein-coding
133152	chr2	112691851	112691950	+	0	NA	Intergenic	L1MC|LINE|L1	-29586	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
92168	chr17	7708901	7709100	+	0	NA	intron (NM_001406, intron 4 of 4)	intron (NM_001406, intron 4 of 4)	3798	NM_001406	1949		NM_001406	ENSG00000108947	EFNB3	EFL6|EPLG8|LERK8	ephrin B3	protein-coding
1510	chr1	2821951	2822300	+	0	NA	Intergenic	Intergenic	-21257	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
183927	chr5	87401571	87401730	+	0	NA	intron (NM_001239, intron 6 of 8)	intron (NM_001239, intron 6 of 8)	11254	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
92400	chr17	8326221	8327350	+	0	NA	Intergenic	Intergenic	-13055	NM_001319953	146852		NM_153007	ENSG00000184650	ODF4	CT134|CT136|OPPO1	outer dense fiber of sperm tails 4	protein-coding
76740	chr15	76333821	76334450	+	0	NA	Intergenic	Intergenic	-2638	NM_145805	64843		NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
80812	chr16	3455951	3456450	+	0	NA	intron (NM_001317093, intron 2 of 6)	MER5A1|DNA|hAT-Charlie	-1845	NM_001317094	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
111555	chr19	4045801	4046480	+	0	NA	3' UTR (NM_001317990, exon 3 of 3)	3' UTR (NM_001317990, exon 3 of 3)	19389	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
84235	chr16	29992571	29992730	+	0	NA	TTS (NM_004783)	TTS (NM_004783)	2967	NM_003609	8479		NM_003609	ENSG00000149929	HIRIP3	-	HIRA interacting protein 3	protein-coding
157045	chr22	42574921	42575980	+	0	NA	intron (NR_002184, intron 6 of 6)	intron (NR_002184, intron 6 of 6)	6561	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
127389	chr2	41836921	41837230	+	0	NA	Intergenic	Intergenic	-40480	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
20973	chr1	202616051	202616250	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	27303	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
21739	chr1	206802751	206804050	+	0	NA	intron (NM_153758, intron 2 of 6)	intron (NM_153758, intron 2 of 6)	-25477	NM_013371	29949		NM_013371	ENSG00000142224	IL19	IL-10C|MDA1|NG.1|ZMDA1	interleukin 19	protein-coding
25731	chr10	9051621	9052080	+	0	NA	Intergenic	L2a|LINE|L2	153861	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
26002	chr10	12127171	12127330	+	0	NA	Intergenic	AluSz|SINE|Alu	-2391	NM_001142628	55176		NM_018144	ENSG00000065665	SEC61A2	-	SEC61 translocon subunit alpha 2	protein-coding
148521	chr20	64095221	64096300	+	0	NA	intron (NM_001318855, intron 1 of 2)	intron (NM_001318855, intron 1 of 2)	3072	NM_001318854	4987		NM_000913	ENSG00000125510	OPRL1	KOR-3|KOR3|NOCIR|NOP|NOPr|OOR|OPRL|ORL1|PNOCR	opioid related nociceptin receptor 1	protein-coding
78376	chr15	91589451	91589550	+	0	NA	Intergenic	L1ME4b|LINE|L1	126161	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
192034	chr6	16471221	16472430	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	233238	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
27145	chr10	28326201	28327250	+	0	NA	Intergenic	Intergenic	-23661	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
192301	chr6	21438401	21438980	+	0	NA	Intergenic	Intergenic	73202	NR_103790	100874531		NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
49854	chr12	34123101	34123530	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	100819	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
75405	chr15	65765401	65765700	+	0	NA	intron (NM_001376919, intron 1 of 31)	L1MD2|LINE|L1	26743	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
218853	chr8	60180371	60180530	+	0	NA	Intergenic	Intergenic	100950	NM_001321837	767		NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
71899	chr15	22655951	22656130	+	0	NA	Intergenic	AluY|SINE|Alu	-8699	NR_003521	339005		NR_003521		WHAMMP3	WHAMML1|WHDC1L1	WHAMM pseudogene 3	pseudo
75891	chr15	69760051	69760150	+	0	NA	Intergenic	Intergenic	-75134	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
69098	chr14	92273171	92273330	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-49331	NM_153648	123041		NM_153646	ENSG00000140090	SLC24A4	AI2A5|NCKX4|SHEP6|SLC24A2	solute carrier family 24 member 4	protein-coding
219776	chr8	81113371	81113730	+	0	NA	Intergenic	Intergenic	-1482	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
184041	chr5	91375171	91375550	+	0	NA	intron (NR_138071, intron 4 of 7)	intron (NR_138071, intron 4 of 7)	4737	NM_001329671	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
151074	chr21	44810721	44811380	+	0	NA	intron (NM_006936, intron 2 of 3)	intron (NM_006936, intron 2 of 3)	7012	NM_006936	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
88805	chr16	87396751	87396850	+	0	NA	intron (NM_022818, intron 1 of 3)	intron (NM_022818, intron 1 of 3)	4464	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
68387	chr14	80587171	80587630	+	0	NA	intron (NR_157142, intron 19 of 24)	intron (NR_157142, intron 19 of 24)	354338	NR_157142	145508		NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding
88491	chr16	85137201	85137600	+	0	NA	intron (NR_033984, intron 1 of 2)	intron (NR_033984, intron 1 of 2)	250	NR_033984	400548		NR_033984	ENSG00000278214	LINC02139	-	long intergenic non-protein coding RNA 2139	ncRNA
94282	chr17	28715101	28715300	+	0	NA	exon (NM_001256276, exon 7 of 10)	exon (NM_001256276, exon 7 of 10)	2668	NM_001144942	83871		NM_031934	ENSG00000109113	RAB34	NARR|OFD20|RAB39|RAH	RAB34, member RAS oncogene family	protein-coding
89638	chr16	89329901	89330980	+	0	NA	intron (NR_045839, intron 2 of 9)	MLT1F|LTR|ERVL-MaLR	9988	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
30655	chr10	80473571	80474700	+	0	NA	intron (NM_001351272, intron 2 of 9)	intron (NM_001351272, intron 2 of 9)	5894	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
34381	chr10	132311451	132311550	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	-3550	NM_173575	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
56439	chr12	113463501	113463800	+	0	NA	intron (NM_022363, intron 4 of 4)	CpG	8221	NM_022363	64211		NM_022363	ENSG00000089116	LHX5	-	LIM homeobox 5	protein-coding
228765	chr9	110249921	110250180	+	0	NA	intron (NM_001244938, intron 2 of 3)	intron (NM_001244938, intron 2 of 3)	6457	NM_003329	7295		NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1|TXN1|Trx80	thioredoxin	protein-coding
125699	chr2	20353871	20354030	+	0	NA	Intergenic	Intergenic	-1697	NM_001352920	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
158520	chr3	3165101	3165500	+	0	NA	intron (NM_016302, intron 5 of 10)	Tigger1|DNA|TcMar-Tigger	14391	NM_016302	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
75198	chr15	64822421	64822900	+	0	NA	intron (NM_001286497, intron 2 of 12)	intron (NM_001286497, intron 2 of 12)	2987	NM_001286496	80119		NM_025049	ENSG00000140451	PIF1	C15orf20|PIF	PIF1 5'-to-3' DNA helicase	protein-coding
21568	chr1	206464071	206464230	+	0	NA	3' UTR (NM_001377444, exon 24 of 24)	3' UTR (NM_001377444, exon 24 of 24)	-6326	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
44450	chr11	104914951	104915450	+	0	NA	intron (NR_034078, intron 1 of 4)	L2c|LINE|L2	2975	NR_034079	643733		NR_034078	ENSG00000291173	CASP4LP	CASP17P	caspase 4 like, pseudogene	pseudo
167598	chr3	129567051	129567480	+	0	NA	intron (NM_015103, intron 22 of 35)	intron (NM_015103, intron 22 of 35)	18880	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
98757	chr17	48102971	48103750	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-1882	NM_001127228	10951		NM_006807	ENSG00000108468	CBX1	CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|Hp1beta|M31|MOD1|p25beta	chromobox 1	protein-coding
115121	chr19	14362971	14364180	+	0	NA	intron (NR_134908, intron 1 of 3)	intron (NR_134908, intron 1 of 3)	415	NR_134908	105372288		NR_134908	ENSG00000266913	LINC01841	-	long intergenic non-protein coding RNA 1841	ncRNA
216246	chr8	12221701	12221950	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-27692	NR_148876	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
136824	chr2	182666951	182667280	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-49142	NR_073366	54431		NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
121161	chr19	46394071	46394630	+	0	NA	Intergenic	Intergenic	19214	NM_032040	83987		NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding
40583	chr11	64371771	64372130	+	0	NA	3' UTR (NM_001006944, exon 17 of 17)	3' UTR (NM_001006944, exon 17 of 17)	3348	NR_031602	100302280		NR_031602	ENSG00000221273	MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	ncRNA
95777	chr17	38696401	38696880	+	0	NA	Intergenic	Intergenic	-4504	NR_158157	105371763		NR_158157		LOC105371763	-	uncharacterized LOC105371763	ncRNA
51696	chr12	53179251	53179350	+	0	NA	intron (NM_001244705, intron 1 of 16)	L2a|LINE|L2	1346	NM_015989	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
142146	chr20	2753851	2753950	+	0	NA	intron (NR_138537, intron 15 of 17)	intron (NR_138537, intron 15 of 17)	46727	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
81944	chr16	11799571	11800780	+	0	NA	Intergenic	MER41G|LTR|ERV1	-2917	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
228839	chr9	112176481	112177900	+	0	NA	Intergenic	AluJo|SINE|Alu	-1893	NM_001282643	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
192978	chr6	27895151	27895950	+	0	NA	Intergenic	Intergenic	2125	NM_003527	8348		NM_003527	ENSG00000274641	H2BC17	H2B.2|H2B/n|H2BFN|HIST1H2BO|dJ193B12.2	H2B clustered histone 17	protein-coding
135173	chr2	157875371	157877530	+	0	NA	promoter-TSS (NM_001347664)	promoter-TSS (NM_001347664)	-120	NM_001111067	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
188720	chr5	157342821	157343330	+	0	NA	exon (NM_001001343, exon 2 of 2)	exon (NM_001001343, exon 2 of 2)	2602	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
131056	chr2	88600001	88600630	+	0	NA	intron (NM_004836, intron 2 of 16)	intron (NM_004836, intron 2 of 16)	24614	NM_001313915	9451		NM_004836	ENSG00000172071	EIF2AK3	PEK|PERK|WRS	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding
87897	chr16	78794451	78795430	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	695286	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
127083	chr2	37585071	37585600	+	0	NA	Intergenic	Intergenic	86307	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
19287	chr1	172818071	172818600	+	0	NA	Intergenic	Intergenic	159232	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
75356	chr15	65531901	65532100	+	0	NA	intron (NM_016395, intron 1 of 10)	intron (NM_016395, intron 1 of 10)	1537	NM_016395	51495		NM_016395	ENSG00000074696	HACD3	B-IND1|BIND1|HSPC121|PTPLAD1	3-hydroxyacyl-CoA dehydratase 3	protein-coding
60873	chr13	46071671	46071930	+	0	NA	intron (NM_001872, intron 6 of 10)	L2|LINE|L2	18952	NR_046226	100509894		NR_046226	ENSG00000235903	CPB2-AS1	-	CPB2 antisense RNA 1	ncRNA
165722	chr3	103220721	103220980	+	0	NA	Intergenic	L1PA2|LINE|L1	303266	NR_039611	100616336		NR_039611	ENSG00000265328	MIR548AB	-	microRNA 548ab	ncRNA
9627	chr1	52422601	52423130	+	0	NA	TTS (NM_001009881)	TTS (NM_001009881)	18263	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
197786	chr6	87677621	87678100	+	0	NA	exon (NM_018064, exon 3 of 5)	exon (NM_018064, exon 3 of 5)	24373	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
31152	chr10	90859301	90859900	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-1561	NM_019860	3363		NM_000872	ENSG00000148680	HTR7	5-HT7	5-hydroxytryptamine receptor 7	protein-coding
15183	chr1	149159501	149159700	+	0	NA	Intergenic	L1MB3|LINE|L1	41546	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
134986	chr2	152690221	152690580	+	0	NA	intron (NM_001365600, intron 5 of 25)	AluSz6|SINE|Alu	27061	NM_001365603	55660		NM_017892	ENSG00000196504	PRPF40A	FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40	pre-mRNA processing factor 40 homolog A	protein-coding
167566	chr3	129403451	129403750	+	0	NA	intron (NM_207307, intron 7 of 8)	intron (NM_207307, intron 7 of 8)	-4161	NR_003111	132241		NR_003111	ENSG00000290993	RPL32P3	-	ribosomal protein L32 pseudogene 3	pseudo
73762	chr15	45461071	45461230	+	0	NA	Intergenic	Intergenic	28100	NR_030599	100126311		NR_030599	ENSG00000284386	MIR147B	MIRN147B|mir-147b	microRNA 147b	ncRNA
162284	chr3	47384351	47384650	+	0	NA	intron (NM_001304482, intron 1 of 23)	intron (NM_001304482, intron 1 of 23)	3479	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
158377	chr22	50483421	50483980	+	0	NA	3' UTR (NM_001253845, exon 3 of 3)	3' UTR (NM_001253845, exon 3 of 3)	2157	NM_001253845	79924		NM_024866	ENSG00000128165	ADM2	AM2|dJ579N16.4	adrenomedullin 2	protein-coding
151938	chr22	19109051	19110330	+	0	NA	intron (NM_001184781, intron 1 of 9)	L1MB2|LINE|L1	12722	NM_001184781	9993		NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
3690	chr1	16513201	16514980	+	0	NA	TTS (NR_004400)	TTS (NR_004400)	195	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
14700	chr1	145923951	145924650	+	0	NA	non-coding (NR_002328, exon 2 of 3)	non-coding (NR_002328, exon 2 of 3)	-2531	NR_147182	105371260		NR_147182	ENSG00000234222	LIX1L-AS1	-	LIX1L antisense RNA 1	ncRNA
210917	chr7	101215971	101216130	+	0	NA	intron (NM_001084, intron 4 of 18)	intron (NM_001084, intron 4 of 18)	1531	NM_001084	8985		NM_001084	ENSG00000106397	PLOD3	LH3	procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	protein-coding
113881	chr19	10671001	10671680	+	0	NA	intron (NM_153464, intron 3 of 17)	intron (NM_153464, intron 3 of 17)	16994	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
32556	chr10	103360871	103361030	+	0	NA	Intergenic	Tigger6a|DNA|TcMar-Tigger	-7026	NM_139052	6877		NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
164519	chr3	63863221	63865050	+	0	NA	promoter-TSS (NM_025075)	promoter-TSS (NM_025075)	-212	NM_001285387	80145		NM_025075	ENSG00000163634	THOC7	NIF3L1BP1|fSAP24|hTREX30	THO complex subunit 7	protein-coding
23658	chr1	231044971	231045400	+	0	NA	Intergenic	Intergenic	-4931	NM_198552	375061		NM_198552	ENSG00000182118	FAM89A	C1orf153	family with sequence similarity 89 member A	protein-coding
52494	chr12	56007221	56008230	+	0	NA	5' UTR (NM_001351089, exon 1 of 12)	5' UTR (NM_001351089, exon 1 of 12)	221	NM_001351089	64375		NM_022465	ENSG00000123411	IKZF4	EOS|ZNFN1A4	IKAROS family zinc finger 4	protein-coding
59580	chr13	27449521	27451580	+	0	NA	promoter-TSS (NM_001166261)	promoter-TSS (NM_001166261)	52	NM_152912	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
67775	chr14	73740851	73740950	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-17847	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
180076	chr5	1103501	1104050	+	0	NA	intron (NM_006598, intron 1 of 23).2	intron (NM_006598, intron 1 of 23).2	8288	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
123423	chr19	54099171	54100130	+	0	NA	intron (NM_206818, intron 3 of 5).10	intron (NM_206818, intron 3 of 5).10	3036	NM_001282350	126014		NM_130771	ENSG00000170909	OSCAR	PIGR3|PIgR-3	osteoclast associated Ig-like receptor	protein-coding
150147	chr21	38733671	38734400	+	0	NA	Intergenic	Intergenic	34939	NR_027066	400866		NM_001001789	ENSG00000223806	LINC00114	C21orf24|NCRNA00114	long intergenic non-protein coding RNA 114	ncRNA
224266	chr9	6054301	6054860	+	0	NA	Intergenic	Intergenic	-38956	NM_001243203	26953		NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
67614	chr14	72810151	72810680	+	0	NA	intron (NM_001280542, intron 1 of 10)	intron (NM_001280542, intron 1 of 10)	82234	NM_001280544	8110		NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4|SMARCG3	double PHD fingers 3	protein-coding
15728	chr1	151054471	151054830	+	0	NA	intron (NM_020239, intron 3 of 4)	intron (NM_020239, intron 3 of 4)	4972	NM_020239	56882		NM_020239	ENSG00000197622	CDC42SE1	SCIP1|SPEC1	CDC42 small effector 1	protein-coding
194667	chr6	33643671	33644400	+	0	NA	intron (NM_002224, intron 2 of 57)	AluSg|SINE|Alu	-10290	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
227219	chr9	88625921	88626380	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	90972	NM_145283	158046		NM_145283	ENSG00000130045	NXNL2	C9orf121|RDCVF2|RdCVF2L	nucleoredoxin like 2	protein-coding
168261	chr3	141435021	141435480	+	0	NA	intron (NM_001350099, intron 4 of 5)	MER94|DNA|hAT-Blackjack	32236	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
106525	chr18	21106071	21106250	+	0	NA	intron (NM_005406, intron 1 of 32)	intron (NM_005406, intron 1 of 32)	5653	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
145032	chr20	38077801	38078000	+	0	NA	intron (NM_021215, intron 6 of 6)	AluJb|SINE|Alu	44154	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
143708	chr20	32233351	32233650	+	0	NA	intron (NM_015352, intron 6 of 6)	L2b|LINE|L2	-4295	NR_031726	100302183		NR_031726	ENSG00000284125	MIR1825	MIRN1825|hsa-mir-1825	microRNA 1825	ncRNA
199416	chr6	116666721	116667180	+	0	NA	exon (NM_145062, exon 2 of 10)	exon (NM_145062, exon 2 of 10)	1816	NM_145062	221302		NM_145062	ENSG00000153975	ZUP1	C6orf113|DUB|ZUFSP	zinc finger containing ubiquitin peptidase 1	protein-coding
42022	chr11	67423321	67423950	+	0	NA	exon (NM_020811, exon 9 of 9)	exon (NM_020811, exon 9 of 9)	-4859	NM_003952	6199		NM_003952	ENSG00000175634	RPS6KB2	KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb	ribosomal protein S6 kinase B2	protein-coding
162330	chr3	47577621	47578600	+	0	NA	intron (NM_001206945, intron 1 of 4)	CpG	755	NM_006574	10675		NM_006574	ENSG00000114646	CSPG5	NGC	chondroitin sulfate proteoglycan 5	protein-coding
122114	chr19	48805601	48806030	+	0	NA	intron (NM_001164773, intron 1 of 8)	intron (NM_001164773, intron 1 of 8)	5214	NM_001284325	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
174360	chr4	38806551	38806930	+	0	NA	Intergenic	Intergenic	-1949	NM_003263	7096		NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll like receptor 1	protein-coding
55158	chr12	100127971	100128730	+	0	NA	intron (NM_015054, intron 1 of 20)	intron (NM_015054, intron 1 of 20)	14524	NM_015054	23074		NM_015054	ENSG00000111647	BLTP3B	SHIP164|SHIP164A|UHRF1BP1L	bridge-like lipid transfer protein family member 3B	protein-coding
160446	chr3	29111401	29111630	+	0	NA	Intergenic	L1HS|LINE|L1	169424	NR_109804	100873979		NR_109804		RBMS3-AS3	-	RBMS3 antisense RNA 3	ncRNA
114603	chr19	12954651	12955130	+	0	NA	intron (NM_052850, intron 1 of 1)	MIR|SINE|MIR	2333	NM_052850	90480		NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1|mL64	GADD45G interacting protein 1	protein-coding
202719	chr6	158856051	158856550	+	0	NA	intron (NR_028496, intron 2 of 2)	intron (NR_028496, intron 2 of 2)	1332	NR_028496	202459		NM_145303	ENSG00000293101	OSTCP1	DC2L|OSTCL	oligosaccharyltransferase complex subunit pseudogene 1	pseudo
6921	chr1	31646171	31647030	+	0	NA	Intergenic	Intergenic	-1724	NM_012392	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
111083	chr19	3178281	3179690	+	0	NA	exon (NM_003775, exon 1 of 1)	exon (NM_003775, exon 1 of 1)	216	NM_003775	8698		NM_003775	ENSG00000125910	S1PR4	EDG6|LPC1|S1P4|SLP4	sphingosine-1-phosphate receptor 4	protein-coding
132717	chr2	109102851	109103350	+	0	NA	Intergenic	Intergenic	-26105	NM_001099289	344558		NM_001099289	ENSG00000172985	SH3RF3	POSH2|SH3MD4	SH3 domain containing ring finger 3	protein-coding
16119	chr1	153645101	153645850	+	0	NA	3' UTR (NM_001206612, exon 6 of 6)	3' UTR (NM_001206612, exon 6 of 6)	-11114	NM_001024210	6284		NM_005979	ENSG00000189171	S100A13	-	S100 calcium binding protein A13	protein-coding
137336	chr2	196136371	196137280	+	0	NA	3' UTR (NM_004226, exon 8 of 8)	3' UTR (NM_004226, exon 8 of 8)	34753	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
176844	chr4	102586301	102587800	+	0	NA	intron (NM_001382625, intron 12 of 24)	intron (NM_001382625, intron 12 of 24)	-84564	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
174905	chr4	49097571	49097750	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	111018	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
3096	chr1	12201221	12202430	+	0	NA	intron (NM_001066, intron 8 of 9)	intron (NM_001066, intron 8 of 9)	10112	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
117161	chr19	19333301	19333500	+	0	NA	intron (NM_015329, intron 1 of 18)	AluJo|SINE|Alu	12571	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
100181	chr17	58655701	58656100	+	0	NA	intron (NM_198393, intron 1 of 32)	intron (NM_198393, intron 1 of 32)	36145	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
56087	chr12	110668951	110669700	+	0	NA	intron (NM_001256413, intron 2 of 6)	intron (NM_001256413, intron 2 of 6)	19790	NM_032369	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
114953	chr19	13990221	13990480	+	0	NA	intron (NM_002918, intron 2 of 20)	intron (NM_002918, intron 2 of 20)	15970	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
32752	chr10	104320271	104320650	+	0	NA	intron (NM_001272013, intron 1 of 1)	MER4D1|LTR|ERV1	-2904	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
158093	chr22	49996221	49997430	+	0	NA	exon (NM_001371417, exon 15 of 15)	exon (NM_001371417, exon 15 of 15)	15940	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
118013	chr19	34174371	34174900	+	0	NA	intron (NM_001384434, intron 1 of 9).2	intron (NM_001384434, intron 1 of 9).2	2131	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
73566	chr15	44428521	44429100	+	0	NA	intron (NM_016396, intron 1 of 12)	intron (NM_016396, intron 1 of 12)	1181	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
165526	chr3	100491401	100491630	+	0	NA	Intergenic	Intergenic	-1104	NM_001363876	55076		NM_018004	ENSG00000181458	TMEM45A	DERP7|DNAPTP4	transmembrane protein 45A	protein-coding
34689	chr10	133380951	133382100	+	0	NA	exon (NM_152911, exon 3 of 7)	exon (NM_152911, exon 3 of 7)	2263	NM_207128	196743		NM_152911	ENSG00000148832	PAOX	PAO	polyamine oxidase	protein-coding
39935	chr11	62538101	62538720	+	0	NA	intron (NM_024060, intron 1 of 5)	intron (NM_024060, intron 1 of 5)	7254	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
77764	chr15	85789071	85789430	+	0	NA	intron (NM_022480, intron 1 of 2)	intron (NM_022480, intron 1 of 2)	5675	NM_022480	64410		NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch like family member 25	protein-coding
44617	chr11	108666401	108666880	+	0	NA	intron (NM_004398, intron 1 of 17)	MLT1D|LTR|ERVL-MaLR	1571	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
43867	chr11	88326321	88327000	+	0	NA	intron (NM_148170, intron 3 of 3)	intron (NM_148170, intron 3 of 3)	11076	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
205342	chr7	12684721	12685100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1917	NM_212460	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
197582	chr6	79941621	79941950	+	0	NA	intron (NM_022726, intron 1 of 5)	intron (NM_022726, intron 1 of 5)	5768	NM_022726	6785		NM_022726	ENSG00000118402	ELOVL4	ADMD|CT118|ISQMR|SCA34|STGD2|STGD3	ELOVL fatty acid elongase 4	protein-coding
51859	chr12	53478251	53478700	+	0	NA	intron (NM_031989, intron 14 of 14)	AluSq2|SINE|Alu	14007	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
55851	chr12	109110621	109112180	+	0	NA	TTS (NM_003362)	TTS (NM_003362)	-5187	NM_001093	32		NM_001093	ENSG00000076555	ACACB	ACACbeta|ACC-beta|ACC2|ACCB|ACCbeta|HACC275	acetyl-CoA carboxylase beta	protein-coding
80958	chr16	3872351	3872930	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	7480	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
167762	chr3	132623451	132623780	+	0	NA	intron (NR_037804, intron 34 of 44)	intron (NR_037804, intron 34 of 44)	23478	NM_178445	51554		NM_016557	ENSG00000129048	ACKR4	CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding
174655	chr4	40843851	40843970	+	0	NA	intron (NM_001166051, intron 1 of 6)	intron (NM_001166051, intron 1 of 6)	13245	NM_001166051	323		NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
62281	chr13	98840121	98840480	+	0	NA	intron (NM_001318849, intron 38 of 54)	intron (NM_001318849, intron 38 of 54)	8216	NR_046663	100874096		NR_046663	ENSG00000229918	DOCK9-AS1	-	DOCK9 antisense RNA 1	ncRNA
57477	chr12	122063301	122063500	+	0	NA	non-coding (NR_135044, exon 1 of 4)	non-coding (NR_135044, exon 1 of 4)	110	NR_135044	100506691		NR_135044	ENSG00000256546	LINC02985	-	long intergenic non-protein coding RNA 2985	ncRNA
108509	chr18	74195921	74196700	+	0	NA	Intergenic	Intergenic	47787	NM_014177	29090		NM_014177	ENSG00000075336	TIMM21	C18orf55|HSPC154|TIM21	translocase of inner mitochondrial membrane 21	protein-coding
125677	chr2	20287751	20287850	+	0	NA	intron (NM_015317, intron 10 of 20)	L2c|LINE|L2	39586	NM_001282791	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
238507	chrX	153648021	153648580	+	0	NA	exon (NM_001395, exon 2 of 4)	exon (NM_001395, exon 2 of 4)	1097	NM_001318503	1852		NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
223307	chr8	143807201	143807800	+	0	NA	intron (NM_182706, intron 16 of 36).2	intron (NM_182706, intron 16 of 36).2	5542	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
123231	chr19	52938521	52939400	+	0	NA	intron (NM_001202473, intron 3 of 3)	intron (NM_001202473, intron 3 of 3)	3634	NR_037805	399669		NM_203307	ENSG00000293246	ZNF321P	ZNF321	zinc finger protein 321, pseudogene	pseudo
25577	chr10	8028701	8029050	+	0	NA	Intergenic	AluSz|SINE|Alu	23616	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
183402	chr5	77851371	77852050	+	0	NA	Intergenic	(CGTGTG)n|Simple_repeat|Simple_repeat	-32946	NR_105012	101929154		NR_105012	ENSG00000287162	LOC101929154	-	uncharacterized LOC101929154	ncRNA
145298	chr20	41044501	41045200	+	0	NA	intron (NM_003286, intron 2 of 20)	AluSz6|SINE|Alu	16028	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
64862	chr14	35294051	35294580	+	0	NA	intron (NM_001282232, intron 1 of 6)	AluSp|SINE|Alu	1933	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
63612	chr14	20613151	20614630	+	0	NA	Intergenic	Intergenic	-23067	NM_001024822	493901		NM_001024822	ENSG00000258436	RNASE12	HEL-S-85p|RAI1	ribonuclease A family member 12 (inactive)	protein-coding
211219	chr7	102632771	102632930	+	0	NA	Intergenic	Intergenic	9941	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
3406	chr1	15757601	15757800	+	0	NA	intron (NM_001350151, intron 1 of 9)	intron (NM_001350151, intron 1 of 9)	1062	NM_001350151	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
132560	chr2	106422771	106423580	+	0	NA	exon (NM_001144013, exon 20 of 23)	exon (NM_001144013, exon 20 of 23)	41061	NR_003506	285189		NR_003506	ENSG00000291125	PLGLA	PLGLA1|PLGP2|PRGA	plasminogen like A (pseudogene)	pseudo
39457	chr11	60973751	60975030	+	0	NA	intron (NM_006725, intron 1 of 12)	AluSc5|SINE|Alu	2710	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
198159	chr6	93419221	93419780	+	0	NA	promoter-TSS (NM_001376466)	promoter-TSS (NM_001376466)	59	NM_004440	2045		NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding
149181	chr21	20995871	20996230	+	0	NA	Intergenic	Intergenic	-2359	NM_001352595	4685		NM_004540	ENSG00000154654	NCAM2	NCAM21	neural cell adhesion molecule 2	protein-coding
124751	chr2	6918751	6919280	+	0	NA	promoter-TSS (NR_033997)	promoter-TSS (NR_033997)	221	NM_001349184	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
114704	chr19	13147551	13148230	+	0	NA	intron (NM_003765, intron 4 of 7)	AluSg7|SINE|Alu	2485	NM_003765	8677		NM_003765	ENSG00000104915	STX10	SYN10|hsyn10	syntaxin 10	protein-coding
82874	chr16	21540371	21542380	+	0	NA	Intergenic	Intergenic	-20931	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
218289	chr8	42339701	42340350	+	0	NA	intron (NM_002690, intron 2 of 13)	intron (NM_002690, intron 2 of 13)	1531	NM_002690	5423		NM_002690	ENSG00000070501	POLB	-	DNA polymerase beta	protein-coding
159180	chr3	12833001	12833600	+	0	NA	intron (NM_012298, intron 12 of 12)	intron (NM_012298, intron 12 of 12)	7150	NR_002582	619563		NR_002582	ENSG00000207496	SNORA7A	ACA7	small nucleolar RNA, H/ACA box 7A	snoRNA
12829	chr1	110034071	110035580	+	0	NA	intron (NR_073071, intron 1 of 21)	CpG	201	NM_033088	85369		NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
84058	chr16	29586401	29587030	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSp|SINE|Alu	8377	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
116406	chr19	17979171	17979330	+	0	NA	intron (NM_002248, intron 4 of 10)	AluY|SINE|Alu	-21874	NM_001025604	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
132689	chr2	108959301	108959500	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	29820	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
202687	chr6	158799151	158799980	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-18414	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
26194	chr10	14549451	14549750	+	0	NA	promoter-TSS (NM_001320739)	promoter-TSS (NM_001320739)	-963	NM_001320739	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
72232	chr15	30411821	30412080	+	0	NA	intron (NM_001282484, intron 2 of 18)	AluY|SINE|Alu	2310	NM_001282484	101059918		NM_001282484	ENSG00000186399	GOLGA8R	-	golgin A8 family member R	protein-coding
145266	chr20	40756871	40757530	+	0	NA	Intergenic	Intergenic	-42577	NR_145814	109623474		NR_145814		SNORD154	-	small nucleolar RNA, C/D box 154	snoRNA
219465	chr8	73305601	73306100	+	0	NA	intron (NM_172037, intron 2 of 5)	intron (NM_172037, intron 2 of 5)	11248	NM_172037	157506		NM_172037	ENSG00000121039	RDH10	SDR16C4	retinol dehydrogenase 10	protein-coding
186183	chr5	134210201	134210400	+	0	NA	intron (NM_002715, intron 1 of 6)	intron (NM_002715, intron 1 of 6)	15254	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
31911	chr10	100480501	100480700	+	0	NA	intron (NM_003393, intron 3 of 5)	intron (NM_003393, intron 3 of 5)	17591	NM_003393	7479		NM_003393	ENSG00000075290	WNT8B	-	Wnt family member 8B	protein-coding
45987	chr11	121486301	121486700	+	0	NA	intron (NM_003105, intron 3 of 47)	AluYj4|SINE|Alu	-4711	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
35919	chr11	2426851	2427530	+	0	NA	Intergenic	Intergenic	-4145	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
164471	chr3	59938821	59939080	+	0	NA	intron (NR_135491, intron 4 of 6)	intron (NR_135491, intron 4 of 6)	141959	NR_135491	2272		NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad diadenosine triphosphatase	protein-coding
91539	chr17	4999871	5000030	+	0	NA	5' UTR (NM_006612, exon 2 of 23)	5' UTR (NM_006612, exon 2 of 23)	2000	NM_006612	10749		NM_006612	ENSG00000129250	KIF1C	LTXS1|SATX2|SAX2|SPAX2|SPG58	kinesin family member 1C	protein-coding
95531	chr17	36591521	36593080	+	0	NA	intron (NM_024308, intron 1 of 6)	CpG	421	NM_024308	79154		NM_024308	ENSG00000278535	DHRS11	ARPG836|SDR24C1|spDHRS11	dehydrogenase/reductase 11	protein-coding
130418	chr2	85345871	85346700	+	0	NA	intron (NM_017750, intron 5 of 10)	intron (NM_017750, intron 5 of 10)	8243	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
90066	chr16	89973971	89974130	+	0	NA	intron (NR_003227, intron 1 of 9)	intron (NR_003227, intron 1 of 9)	-1218	NM_145039	92806		NM_145039	ENSG00000293473	CENPBD1P	CENPBD1	CENPB DNA-binding domain containing 1, pseudogene	pseudo
105943	chr18	3604571	3605180	+	0	NA	intron (NR_119377, intron 1 of 2)	MER112|DNA|hAT-Charlie	1138	NR_119377	84777		NM_032691		DLGAP1-AS2	DLPAP1-AS2	DLGAP1 antisense RNA 2	ncRNA
183174	chr5	75339651	75339750	+	0	NA	intron (NM_001130996, intron 1 of 18)	intron (NM_001130996, intron 1 of 18)	2480	NM_000859	3156		NM_000859	ENSG00000113161	HMGCR	LDLCQ3|LGMDR28|MYPLG	3-hydroxy-3-methylglutaryl-CoA reductase	protein-coding
91768	chr17	6913871	6914630	+	0	NA	Intergenic	L1PBb|LINE|L1	20473	NR_120453	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
150072	chr21	37399801	37400500	+	0	NA	intron (NM_001347723, intron 1 of 10)	MLT1D|LTR|ERVL-MaLR	-18755	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
228476	chr9	99903921	99904180	+	0	NA	intron (NR_038853, intron 1 of 2)	MIRb|SINE|MIR	2551	NR_038853	441461		NR_038853		STX17-DT	STX17-AS1	STX17 divergent transcript	ncRNA
199325	chr6	113630971	113631680	+	0	NA	intron (NR_125844, intron 1 of 2)	intron (NR_125844, intron 1 of 2)	18750	NR_125844	101927686		NR_125844	ENSG00000230943	LINC02541	-	long intergenic non-protein coding RNA 2541	ncRNA
4656	chr1	22185201	22185600	+	0	NA	Intergenic	Intergenic	-42303	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
28557	chr10	50619921	50620380	+	0	NA	intron (NM_147156, intron 1 of 10)	intron (NM_147156, intron 1 of 10)	3806	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
127555	chr2	42345951	42346050	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	14038	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
214352	chr7	149535221	149535480	+	0	NA	Intergenic	MER61F|LTR|ERV1	-37541	NM_152557	155061		NM_152557	ENSG00000181220	ZNF746	PARIS	zinc finger protein 746	protein-coding
24962	chr10	2392371	2392530	+	0	NA	Intergenic	Intergenic	-77376	NR_038884	399708		NR_038884		LINC00701	-	long intergenic non-protein coding RNA 701	ncRNA
224032	chr9	3477021	3477830	+	0	NA	intron (NM_001282116, intron 1 of 16)	L1M4|LINE|L1	12009	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
72454	chr15	32345721	32346500	+	0	NA	intron (NR_038253, intron 2 of 7)	CpG	-3433	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
29374	chr10	69901751	69901850	+	0	NA	intron (NM_001368884, intron 14 of 36)	intron (NM_001368884, intron 14 of 36)	99894	NM_080805	1305		NM_005203	ENSG00000197467	COL13A1	CMS19|COLXIIIA1	collagen type XIII alpha 1 chain	protein-coding
130685	chr2	86489621	86489880	+	0	NA	intron (NM_001146688, intron 23 of 25)	intron (NM_001146688, intron 23 of 25)	48289	NM_001146688	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
37462	chr11	18269251	18269350	+	0	NA	exon (NM_000331, exon 3 of 4)	exon (NM_000331, exon 3 of 4)	3036	NM_199161	6288		NM_000331	ENSG00000173432	SAA1	PIG4|SAA|SAA2|TP53I4	serum amyloid A1	protein-coding
146880	chr20	51503851	51504150	+	0	NA	intron (NM_173091, intron 3 of 9)	AluSz|SINE|Alu	38719	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
58871	chr13	17566121	17566250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-629112	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
85280	chr16	48598821	48599080	+	0	NA	intron (NM_153029, intron 1 of 6)	MER21-int|LTR|ERVL	11230	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
238886	chrX	154557101	154557300	+	0	NA	intron (NM_001377315, intron 3 of 6)	MLT1C|LTR|ERVL-MaLR	9353	NM_003639	8517		NM_003639	ENSG00000269335	IKBKG	AMCBX1|EDAID1|FIP-3|FIP3|Fip3p|IKK-gamma|IKKAP1|IKKG|IMD33|IP|IP1|IP2|IPD2|NEMO|SAIDX|ZC2HC9	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein-coding
200715	chr6	137496901	137498080	+	0	NA	Intergenic	CpG	-3096	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
55396	chr12	104462451	104464480	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	6517	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
111389	chr19	3747671	3748030	+	0	NA	exon (NM_001267561, exon 19 of 21)	exon (NM_001267561, exon 19 of 21)	13842	NM_004886	9546		NM_004886	ENSG00000011132	APBA3	MGC:15815|X11L2|mint3	amyloid beta precursor protein binding family A member 3	protein-coding
205193	chr7	7681351	7681880	+	0	NA	intron (NM_001302350, intron 3 of 4)	intron (NM_001302350, intron 3 of 4)	36992	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
83673	chr16	28370901	28371100	+	0	NA	Intergenic	AluSz|SINE|Alu	-8140	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
29	chr1	137271	137530	+	0	NA	non-coding (NR_039983, exon 3 of 3)	non-coding (NR_039983, exon 3 of 3)	3166	NR_039983	729737		NR_039983		LOC729737	-	uncharacterized LOC729737	ncRNA
22139	chr1	212011951	212012280	+	0	NA	intron (NM_015434, intron 4 of 19)	MER102b|DNA|hAT-Charlie	-23438	NM_001286230	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
219572	chr8	79613101	79613400	+	0	NA	intron (NM_001199214, intron 1 of 5)	CpG	2133	NM_007029	11075		NM_007029	ENSG00000104435	STMN2	SCG10|SCGN10	stathmin 2	protein-coding
71656	chr14	106842771	106842930	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	8149	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
124939	chr2	8582451	8582750	+	0	NA	intron (NR_110257, intron 1 of 5)	intron (NR_110257, intron 1 of 5)	1192	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
54519	chr12	92111751	92112250	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	29713	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
94966	chr17	32144971	32145130	+	0	NA	intron (NM_001288755, intron 1 of 18)	AluSx|SINE|Alu	-1915	NR_136413	105371730		NR_136413	ENSG00000214708	LOC105371730	-	uncharacterized LOC105371730	ncRNA
163107	chr3	50117001	50117200	+	0	NA	exon (NM_005778, exon 23 of 25)	exon (NM_005778, exon 23 of 25)	-16112	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
231816	chr9	132450821	132451640	+	0	NA	intron (NM_001282957, intron 1 of 5)	AluSq2|SINE|Alu	41019	NM_207417	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
192850	chr6	27172671	27172830	+	0	NA	Intergenic	AluSx|SINE|Alu	25124	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
20062	chr1	185647701	185648180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-19452	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
58178	chr12	124991071	124991430	+	0	NA	Intergenic	AluSx|SINE|Alu	-2119	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
19549	chr1	179023921	179024480	+	0	NA	Intergenic	L3b|LINE|CR1	-1604	NM_001324310	9917		NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B glycosaminoglycan xylosylkinase	protein-coding
231531	chr9	131438021	131438480	+	0	NA	intron (NM_013318, intron 4 of 31)	MIRc|SINE|MIR	44164	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
1831	chr1	6250971	6251130	+	0	NA	intron (NM_207370, intron 4 of 5)	intron (NM_207370, intron 4 of 5)	6871	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
17956	chr1	160426951	160427250	+	0	NA	3' UTR (NM_020335, exon 8 of 8)	3' UTR (NM_020335, exon 8 of 8)	26536	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
156881	chr22	42135871	42136230	+	0	NA	promoter-TSS (NR_034118).2	promoter-TSS (NR_034118).2	-146	NR_034118	100132273		NR_034118	ENSG00000237037	NDUFA6-DT	NDUFA6-AS1	NDUFA6 divergent transcript	ncRNA
158399	chr22	50519101	50519580	+	0	NA	exon (NM_014551, exon 9 of 9)	exon (NM_014551, exon 9 of 9)	6258	NM_005138	9997		NM_005138	ENSG00000284194	SCO2	CEMCOX1|ECGF1|Gliostatin|MC4DN2|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase	synthesis of cytochrome C oxidase 2	protein-coding
118319	chr19	35533601	35534430	+	0	NA	intron (NM_014364, intron 1 of 10)	intron (NM_014364, intron 1 of 10)	559	NM_014364	26330		NM_014364	ENSG00000105679	GAPDHS	GAPD2|GAPDH-2|GAPDS|HEL-S-278|HSD-35	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding
12595	chr1	109036251	109036750	+	0	NA	intron (NM_001142550, intron 1 of 14)	AluSc|SINE|Alu	5602	NM_001142551	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
87698	chr16	74701801	74702230	+	0	NA	Intergenic	MER51B|LTR|ERV1	-1153	NM_152649	197259		NM_152649	ENSG00000168404	MLKL	hMLKL	mixed lineage kinase domain like pseudokinase	protein-coding
145683	chr20	44995371	44996150	+	0	NA	intron (NM_006282, intron 6 of 10)	intron (NM_006282, intron 6 of 10)	29248	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
125858	chr2	24504621	24504880	+	0	NA	intron (NM_001362954, intron 1 of 23)	L4_A_Mam|LINE|RTE-X	12873	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
136108	chr2	173926851	173927280	+	0	NA	intron (NM_001172712, intron 4 of 6)	MSTA|LTR|ERVL-MaLR	36815	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
141405	chr2	240914221	240914950	+	0	NA	intron (NM_001351305, intron 1 of 31)	intron (NM_001351305, intron 1 of 31)	8249	NM_001351305	728763		NM_001351305	ENSG00000226321	CROCC2	-	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding
148608	chr21	5130551	5130730	+	0	NA	TTS (NM_001368238)	TTS (NM_001368238)	-2271	NM_001363758	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
46926	chr11	134277951	134278050	+	0	NA	intron (NM_001080407, intron 3 of 19)	intron (NM_001080407, intron 3 of 19)	1621	NM_001080407	112937		NM_138416	ENSG00000166105	GLB1L3	-	galactosidase beta 1 like 3	protein-coding
120931	chr19	45665971	45666130	+	0	NA	Intergenic	(GAGGGGA)n|Simple_repeat|Simple_repeat	-2171	NM_001308418	2696		NM_000164	ENSG00000010310	GIPR	PGQTL2	gastric inhibitory polypeptide receptor	protein-coding
204598	chr7	5304751	5304850	+	0	NA	3' UTR (NM_001300847, exon 11 of 11)	3' UTR (NM_001300847, exon 11 of 11)	21857	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
217309	chr8	27394271	27394580	+	0	NA	intron (NM_173174, intron 6 of 35)	Tigger3b|DNA|TcMar-Tigger	-38945	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
5808	chr1	26584201	26584400	+	0	NA	Intergenic	Intergenic	29758	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
172651	chr4	2597871	2598030	+	0	NA	intron (NM_001366318, intron 2 of 20)	AluSx4|SINE|Alu	-27482	NM_003704	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
106896	chr18	24624501	24624730	+	0	NA	Intergenic	L1PA2|LINE|L1	-3567	NR_040033	729950		NR_040033	ENSG00000265485	LINC01915	-	long intergenic non-protein coding RNA 1915	ncRNA
194648	chr6	33599651	33599750	+	0	NA	Intergenic	Intergenic	-6362	NR_027908	401253		NM_207497	ENSG00000197251	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
23857	chr1	234771871	234773280	+	0	NA	Intergenic	Intergenic	-12519	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
22337	chr1	214328771	214329300	+	0	NA	intron (NM_020197, intron 7 of 11)	intron (NM_020197, intron 7 of 11)	47876	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
12560	chr1	108696821	108697630	+	0	NA	intron (NM_001349765, intron 4 of 5)	AluJr|SINE|Alu	4915	NM_001349759	55119		NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
239195	chrY	12909551	12910180	+	0	NA	intron (NR_136719, intron 3 of 13)	intron (NR_136719, intron 3 of 13)	4160	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
203056	chr6	166229121	166229380	+	0	NA	Intergenic	Intergenic	-7719	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
14885	chr1	146934251	146934350	+	0	NA	Intergenic	MER51D|LTR|ERV1	-4245	NM_001278141	149013		NM_001278141	ENSG00000268043	NBPF12	COAS1|KIAA1245	NBPF member 12	protein-coding
148958	chr21	12123251	12123350	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-914866	NR_026916	149992		NM_153773		ANKRD30BP2	C21orf99|CT85|CTSP-1|CTSP1	ankyrin repeat domain 30B pseudogene 2	pseudo
110634	chr19	2226051	2226150	+	0	NA	intron (NM_032482, intron 26 of 27)	intron (NM_032482, intron 26 of 27)	8049	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
156387	chr22	41102321	41102630	+	0	NA	intron (NM_001362843, intron 1 of 29)	intron (NM_001362843, intron 1 of 29)	9883	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
144018	chr20	33443121	33445600	+	0	NA	promoter-TSS (NM_003098)	promoter-TSS (NM_003098)	-597	NM_003098	6640		NM_003098	ENSG00000101400	SNTA1	LQT12|SNT1|TACIP1|dJ1187J4.5	syntrophin alpha 1	protein-coding
150168	chr21	39180651	39181400	+	0	NA	intron (NR_049728, intron 1 of 5)	intron (NR_049728, intron 1 of 5)	2426	NM_003720	8624		NM_003720	ENSG00000183527	PSMG1	C21LRP|DSCR2|LRPC21|PAC-1|PAC1	proteasome assembly chaperone 1	protein-coding
147393	chr20	58692561	58694030	+	0	NA	intron (NM_024663, intron 1 of 11)	CpG	495	NM_024663	79716		NM_024663	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase like 1	protein-coding
67038	chr14	67622671	67624050	+	0	NA	intron (NM_001172, intron 2 of 7)	intron (NM_001172, intron 2 of 7)	3440	NM_001172	384		NM_001172	ENSG00000081181	ARG2	-	arginase 2	protein-coding
172901	chr4	3484501	3484780	+	0	NA	promoter-TSS (NM_001256896)	promoter-TSS (NM_001256896)	96	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
142222	chr20	3081851	3081950	+	0	NA	TTS (NM_000490)	TTS (NM_000490)	2824	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
9452	chr1	50368401	50369080	+	0	NA	Intergenic	Intergenic	54703	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
423	chr1	1084321	1084830	+	0	NA	intron (NM_017891, intron 7 of 9)	CpG-48	-10269	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
53571	chr12	67653201	67653800	+	0	NA	intron (NM_006482, intron 2 of 2)	intron (NM_006482, intron 2 of 2)	4755	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
41445	chr11	66086021	66086700	+	0	NA	intron (NM_018026, intron 1 of 23)	AluYe5|SINE|Alu	16088	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
60363	chr13	40922801	40923230	+	0	NA	Intergenic	L1M5|LINE|L1	-1241	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
62806	chr13	109749921	109750180	+	0	NA	Intergenic	Intergenic	21776	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
216122	chr8	11347201	11348100	+	0	NA	promoter-TSS (NR_147705)	promoter-TSS (NR_147705)	-134	NR_147705	100129129		NR_147705	ENSG00000255020	TDH-AS1	-	TDH antisense RNA 1	ncRNA
181194	chr5	39148271	39148430	+	0	NA	intron (NM_199335, intron 3 of 17)	intron (NM_199335, intron 3 of 17)	71213	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
79975	chr16	1787721	1787980	+	0	NA	intron (NM_001284502, intron 3 of 5)	intron (NM_001284502, intron 3 of 5)	4890	NR_104318	10101		NM_012225	ENSG00000095906	NUBP2	CFD1|CIAO6|NBP 2|NUBP1	NUBP iron-sulfur cluster assembly factor 2, cytosolic	protein-coding
66061	chr14	58394571	58394730	+	0	NA	Intergenic	AluJo|SINE|Alu	-1280	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
139945	chr2	230828071	230829030	+	0	NA	Intergenic	CpG	-35635	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
8190	chr1	39569421	39569700	+	0	NA	intron (NM_003819, intron 5 of 15)	intron (NM_003819, intron 5 of 15)	-2050	NR_002983	677834		NR_002983	ENSG00000201457	SNORA55	ACA55	small nucleolar RNA, H/ACA box 55	snoRNA
145784	chr20	45372971	45374200	+	0	NA	3' UTR (NM_014477, exon 5 of 5)	3' UTR (NM_014477, exon 5 of 5)	4740	NM_014477	27296		NM_014477	ENSG00000124251	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
112863	chr19	7595151	7597030	+	0	NA	exon (NM_001080429, exon 1 of 19)	exon (NM_001080429, exon 1 of 19)	227	NM_001080429	57662		NM_020902	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA|PPP1R80	calmodulin regulated spectrin associated protein family member 3	protein-coding
190356	chr5	179702851	179703500	+	0	NA	intron (NM_001363993, intron 2 of 15)	AluSx|SINE|Alu	4208	NM_001746	821		NM_001746	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding
86152	chr16	57751471	57751630	+	0	NA	intron (NM_005886, intron 6 of 19)	intron (NM_005886, intron 6 of 19)	15780	NM_005886	10300		NM_005886	ENSG00000140854	KATNB1	KAT|LIS6	katanin regulatory subunit B1	protein-coding
32625	chr10	103668521	103669380	+	0	NA	intron (NM_014631, intron 6 of 13)	CpG	9265	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
236439	chrX	71536021	71537300	+	0	NA	intron (NM_181672, intron 2 of 21)	intron (NM_181672, intron 2 of 21)	3556	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
106437	chr18	13610071	13610330	+	0	NA	promoter-TSS (NR_039752)	promoter-TSS (NR_039752)	-914	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
155135	chr22	37645151	37645900	+	0	NA	intron (NM_018957, intron 10 of 17)	intron (NM_018957, intron 10 of 17)	5856	NM_001350055	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
58669	chr12	132534651	132534980	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	29409	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
183620	chr5	80221921	80222180	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluJb|SINE|Alu	33998	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
110733	chr19	2322621	2322930	+	0	NA	intron (NM_016199, intron 3 of 3)	AluJb|SINE|Alu	5811	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
36944	chr11	10933051	10933150	+	0	NA	Intergenic	L2c|LINE|L2	74883	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
122755	chr19	50115771	50115930	+	0	NA	Intergenic	AluYa5|SINE|Alu	1990	NR_024228	100169958		NR_024228		SNAR-A8	-	small NF90 (ILF3) associated RNA A8	snRNA
127632	chr2	43130891	43132300	+	0	NA	Intergenic	Intergenic	-29150	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
52267	chr12	54501521	54501950	+	0	NA	intron (NM_001184976, intron 3 of 30)	AluJb|SINE|Alu	2957	NM_001184976	3071		NM_005337	ENSG00000123338	NCKAP1L	HEM1|IMD72	NCK associated protein 1 like	protein-coding
128424	chr2	55302121	55302500	+	0	NA	intron (NM_018084, intron 25 of 31)	intron (NM_018084, intron 25 of 31)	19991	NR_027258	344405		NM_001080459	ENSG00000293422	PRORSD1P	NCRNA00117|PRDXDD1P|Prdxdd1|ProX|ProXp-ala|Ybakd1	prolyl-tRNA synthetase associated domain containing 1, pseudogene	pseudo
160479	chr3	30606051	30607530	+	0	NA	5' UTR (NM_003242, exon 1 of 7)	5' UTR (NM_003242, exon 1 of 7)	189	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
47500	chr12	4025601	4026000	+	0	NA	Intergenic	Intergenic	-152352	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
181929	chr5	54889901	54890100	+	0	NA	Intergenic	MamGyp-int|LTR|Gypsy	95593	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
137760	chr2	198144771	198144930	+	0	NA	intron (NM_006226, intron 5 of 5)	intron (NM_006226, intron 5 of 5)	230247	NR_110267	101927619		NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
175740	chr4	77712251	77712550	+	0	NA	TTS (NM_001286790)	TTS (NM_001286790)	106580	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
209691	chr7	82559471	82559630	+	0	NA	Intergenic	Intergenic	-115594	NM_001366867	781		NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|DEE110|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding
89014	chr16	88110571	88111300	+	0	NA	Intergenic	Intergenic	-9950	NR_120310	400553		NR_120310	ENSG00000205037	LOC400553	-	uncharacterized LOC400553	ncRNA
7392	chr1	32904301	32904700	+	0	NA	Intergenic	Intergenic	-3111	NM_001329723	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
201152	chr6	142924951	142925250	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	20076	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
58003	chr12	124349601	124349800	+	0	NA	intron (NM_001077261, intron 29 of 47)	intron (NM_001077261, intron 29 of 47)	-12458	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
194960	chr6	35302601	35304000	+	0	NA	intron (NM_022047, intron 1 of 10)	intron (NM_022047, intron 1 of 10)	5482	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
85466	chr16	50678321	50678750	+	0	NA	intron (NM_001144972, intron 1 of 3)	intron (NM_001144972, intron 1 of 3)	2777	NM_182854	124460		NM_153337	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
223665	chr8	144391071	144391430	+	0	NA	exon (NM_174922, exon 6 of 15)	exon (NM_174922, exon 6 of 15)	2980	NR_030635	100126351		NR_030635	ENSG00000284310	MIR939	MIRN939|hsa-mir-939|mir-939	microRNA 939	ncRNA
208035	chr7	55885921	55886180	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-1406	NM_001366796	349075		NM_182633	ENSG00000178665	ZNF713	-	zinc finger protein 713	protein-coding
33297	chr10	114786571	114787300	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-18631	NM_001322886	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
55026	chr12	96383971	96384330	+	0	NA	intron (NM_002595, intron 1 of 16)	L1PA16|LINE|L1	16289	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
78866	chr15	100438621	100438880	+	0	NA	TTS (NR_120374)	TTS (NR_120374)	65811	NR_120374	102723320		NR_120374		CERS3-AS1	-	CERS3 antisense RNA 1	ncRNA
2655	chr1	10432921	10433200	+	0	NA	intron (NR_037187, intron 1 of 2)	intron (NR_037187, intron 1 of 2)	2310	NR_036462	378708		NM_199294	ENSG00000175279	CENPS	APITD1|CENP-S|FAAP16|MHF1	centromere protein S	protein-coding
48567	chr12	10279871	10280550	+	0	NA	intron (NM_001351060, intron 2 of 8)	intron (NM_001351060, intron 2 of 8)	-24236	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
142197	chr20	3000921	3001330	+	0	NA	intron (NM_080841, intron 9 of 23)	intron (NM_080841, intron 9 of 23)	-42497	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
53620	chr12	68152271	68152430	+	0	NA	Intergenic	Intergenic	7390	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
44952	chr11	116790021	116790650	+	0	NA	exon (NM_001371904, exon 3 of 3)	exon (NM_001371904, exon 3 of 3)	1544	NM_001371904	116519		NM_052968	ENSG00000110243	APOA5	APOAV|RAP3	apolipoprotein A5	protein-coding
22906	chr1	225880951	225881300	+	0	NA	intron (NM_014698, intron 1 of 24)	intron (NM_014698, intron 1 of 24)	1255	NM_014698	9725		NM_014698	ENSG00000196187	TMEM63A	HLD19|KIAA0792	transmembrane protein 63A	protein-coding
80241	chr16	2202801	2203000	+	0	NA	Intergenic	AluJr|SINE|Alu	-2554	NM_001199173	64223		NM_022372	ENSG00000167965	MLST8	GBL|GbetaL|LST8|POP3|WAT1	MTOR associated protein, LST8 homolog	protein-coding
120759	chr19	45419321	45420350	+	0	NA	intron (NM_001369409, intron 4 of 8)	MSR1|Satellite|Satellite	3693	NM_001369416	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
30526	chr10	79354121	79354380	+	0	NA	3' UTR (NM_005729, exon 6 of 6)	3' UTR (NM_005729, exon 6 of 6)	6781	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
63435	chr13	114105901	114106250	+	0	NA	intron (NM_001320821, intron 1 of 25).2	(GCACAGCG)n|Simple_repeat|Simple_repeat	26548	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
216297	chr8	12599071	12599980	+	0	NA	intron (NR_047662, intron 6 of 8)	MIR|SINE|MIR	66086	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
137491	chr2	197146951	197147800	+	0	NA	intron (NM_153697, intron 2 of 9)	intron (NM_153697, intron 2 of 9)	-50616	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
199541	chr6	118811571	118811730	+	0	NA	Intergenic	AluSx1|SINE|Alu	28942	NR_037662	100287632		NR_037662		SELENOKP3	-	selenoprotein K pseudogene 3	pseudo
162475	chr3	48548701	48549550	+	0	NA	TTS (NR_106881)	TTS (NR_106881)	896	NR_106881	102465494		NR_106881	ENSG00000278799	MIR6823	hsa-mir-6823	microRNA 6823	ncRNA
63957	chr14	22114901	22115300	+	0	NA	Intergenic	Intergenic	317653	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
40544	chr11	64313571	64314350	+	0	NA	exon (NM_001282451, exon 3 of 7)	exon (NM_001282451, exon 3 of 7)	3599	NM_001286082	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
217003	chr8	23161871	23162980	+	0	NA	intron (NM_003840, intron 1 of 8)	intron (NM_003840, intron 1 of 8)	1602	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
147142	chr20	56358621	56359950	+	0	NA	intron (NM_080821, intron 1 of 2)	CpG	311	NM_080821	116151		NM_080821	ENSG00000124098	FAM210B	5A3|C20orf108|dJ1167H4.1	family with sequence similarity 210 member B	protein-coding
156014	chr22	39944111	39944880	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	-2322	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
116094	chr19	17269071	17269230	+	0	NA	intron (NM_001033549, intron 2 of 8)	intron (NM_001033549, intron 2 of 8)	1707	NM_014173	29086		NM_014173	ENSG00000105393	BABAM1	C19orf62|HSPC142|MERIT40|NBA1	BRISC and BRCA1 A complex member 1	protein-coding
106868	chr18	24118601	24119350	+	0	NA	intron (NM_001135993, intron 8 of 13)	Tigger9a|DNA|TcMar-Tigger	5648	NM_001292030	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
207519	chr7	44805301	44805500	+	0	NA	Intergenic	Intergenic	8719	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
137517	chr2	197193471	197193780	+	0	NA	intron (NM_153697, intron 1 of 9)	AluY|SINE|Alu	-4366	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
10696	chr1	74740301	74740730	+	0	NA	intron (NM_138467, intron 3 of 5)	LTR12|LTR|ERV1	-7107	NM_001130042	1429		NM_001889	ENSG00000116791	CRYZ	-	crystallin zeta	protein-coding
204566	chr7	5191921	5192180	+	0	NA	intron (NM_001033519, intron 1 of 11)	MIR3|SINE|MIR	1817	NM_001033519	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
228449	chr9	99837501	99838100	+	0	NA	intron (NM_173200, intron 6 of 8)	intron (NM_173200, intron 6 of 8)	15915	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
81983	chr16	11889001	11889650	+	0	NA	intron (NM_001130007, intron 6 of 14)	intron (NM_001130007, intron 6 of 14)	26631	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
146752	chr20	50817821	50819350	+	0	NA	intron (NM_198799, intron 2 of 4)	intron (NM_198799, intron 2 of 4)	23524	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
40052	chr11	62719471	62719830	+	0	NA	intron (NM_001079559, intron 10 of 13)	intron (NM_001079559, intron 10 of 13)	7734	NR_037946	100534595		NR_037946	ENSG00000234857	HNRNPUL2-BSCL2	-	HNRNPUL2-BSCL2 readthrough (NMD candidate)	ncRNA
92902	chr17	16450321	16450730	+	0	NA	intron (NM_001113567, intron 2 of 3)	intron (NM_001113567, intron 2 of 3)	9299	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
174532	chr4	40189771	40190200	+	0	NA	Intergenic	Intergenic	-1095	NM_001278368	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
147099	chr20	53871101	53871300	+	0	NA	Intergenic	AluSg|SINE|Alu	4509	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
126225	chr2	26981951	26982630	+	0	NA	intron (NM_012326, intron 1 of 6)	intron (NM_012326, intron 1 of 6)	11653	NM_012326	22924		NM_012326	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule associated protein RP/EB family member 3	protein-coding
162562	chr3	48653321	48653930	+	0	NA	exon (NM_001407, exon 9 of 35)	exon (NM_001407, exon 9 of 35)	9261	NM_001407	1951		NM_001407	ENSG00000008300	CELSR3	ADGRC3|CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1	cadherin EGF LAG seven-pass G-type receptor 3	protein-coding
195224	chr6	36142271	36142630	+	0	NA	non-coding (NR_072996, exon 10 of 10)	non-coding (NR_072996, exon 10 of 10)	11937	NM_002754	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
213854	chr7	142248551	142248650	+	0	NA	Intergenic	Intergenic	-1533	NR_024346	100289017		NR_024346	ENSG00000240268	MOXD2P	MOXD2	monooxygenase DBH like 2, pseudogene	pseudo
223801	chr8	144788101	144790050	+	0	NA	TTS (NM_001317782)	TTS (NM_001317782)	-1730	NM_030580	80778		NM_030580	ENSG00000196378	ZNF34	KOX32	zinc finger protein 34	protein-coding
104189	chr17	80442401	80442600	+	0	NA	Intergenic	Intergenic	23082	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
88780	chr16	87315601	87315800	+	0	NA	intron (NM_001256917, intron 2 of 4)	intron (NM_001256917, intron 2 of 4)	1692	NM_001195124	100506581		NM_001195124	ENSG00000260456	C16orf95	-	chromosome 16 open reading frame 95	protein-coding
92371	chr17	8219571	8219980	+	0	NA	TTS (NR_026951)	TTS (NR_026951)	4268	NR_026951	284029		NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324|RNA00324|TP53LC03	long intergenic non-protein coding RNA 324	ncRNA
234187	chrX	11940751	11941100	+	0	NA	intron (NM_001368395, intron 3 of 18)	L1HS|LINE|L1	118486	NM_001368398	9758		NM_014728	ENSG00000169933	FRMPD4	MRX104|PDZD10|PDZK10|XLID104	FERM and PDZ domain containing 4	protein-coding
210610	chr7	100434721	100434980	+	0	NA	TTS (NM_001194991)	TTS (NM_001194991)	1647	NM_145030	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
172378	chr4	1759251	1759550	+	0	NA	Intergenic	Intergenic	-33893	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
192782	chr6	26539871	26540030	+	0	NA	intron (NM_006353, intron 1 of 1)	intron (NM_006353, intron 1 of 1)	1584	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
84126	chr16	29679171	29680530	+	0	NA	intron (NM_001318249, intron 1 of 2)	LTR14C|LTR|ERVK	670	NR_134536	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
89837	chr16	89585151	89585500	+	0	NA	intron (NM_153636, intron 5 of 14)	intron (NM_153636, intron 5 of 14)	9567	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
15144	chr1	148844251	148844430	+	0	NA	promoter-TSS (NM_001377393)	promoter-TSS (NM_001377393)	-88	NM_001377393	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
32272	chr10	102072471	102073220	+	0	NA	Intergenic	Intergenic	7496	NM_024747	79803		NM_024747	ENSG00000166189	HPS6	BLOC2S3	HPS6 biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding
16317	chr1	154197051	154197550	+	0	NA	Intergenic	Intergenic	-3557	NR_030600	100126346		NR_030600	ENSG00000215938	MIR190B	MIRN190B|mir-190b	microRNA 190b	ncRNA
150196	chr21	39348101	39349950	+	0	NA	promoter-TSS (NM_004965)	promoter-TSS (NM_004965)	63	NM_004965	3150		NM_004965	ENSG00000205581	HMGN1	HMG14	high mobility group nucleosome binding domain 1	protein-coding
110116	chr19	1566671	1567490	+	0	NA	intron (NM_203304, intron 1 of 1)	CpG	978	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
118019	chr19	34180521	34181180	+	0	NA	intron (NM_001384434, intron 1 of 9).2	L2|LINE|L2	8346	NM_001384421	26065		NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A mRNA processing body assembly factor	protein-coding
158099	chr22	50009201	50009650	+	0	NA	intron (NM_001001694, intron 1 of 14)	intron (NM_001001694, intron 1 of 14)	3340	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
114959	chr19	13996371	13996730	+	0	NA	intron (NM_002918, intron 1 of 20)	MIRb|SINE|MIR	9770	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
79884	chr16	1540201	1540750	+	0	NA	intron (NM_024600, intron 1 of 2)	intron (NM_024600, intron 1 of 2)	6809	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
132784	chr2	109969901	109970200	+	0	NA	Intergenic	LTR13|LTR|ERVK	-16930	NR_046110	440894		NR_046110	ENSG00000204588	LINC01123	-	long intergenic non-protein coding RNA 1123	ncRNA
201661	chr6	149494851	149495850	+	0	NA	Intergenic	Intergenic	-10336	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
196478	chr6	43580451	43581400	+	0	NA	intron (NM_001291969, intron 1 of 8)	SVA_F|Retroposon|SVA	4740	NM_001291970	5429		NM_006502	ENSG00000170734	POLH	RAD30|RAD30A|XP-V|XPV	DNA polymerase eta	protein-coding
105588	chr18	500501	500900	+	0	NA	promoter-TSS (NM_130386)	promoter-TSS (NM_130386)	1	NM_130386	81035		NM_030781	ENSG00000158270	COLEC12	CLP1|NSR2|SCARA4|SRCL	collectin subfamily member 12	protein-coding
9322	chr1	46546051	46546750	+	0	NA	3' UTR (NM_001322255, exon 4 of 4)	3' UTR (NM_001322255, exon 4 of 4)	4815	NM_001097611	148930		NM_182516	ENSG00000162456	KNCN	Kino|L5	kinocilin	protein-coding
135222	chr2	159225901	159226650	+	0	NA	intron (NM_001350064, intron 24 of 26)	intron (NM_001350064, intron 24 of 26)	39440	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
231504	chr9	131400321	131401580	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	6864	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
29626	chr10	71776351	71776680	+	0	NA	intron (NM_022124, intron 36 of 67)	LTR33|LTR|ERVL	-2995	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
54271	chr12	88863821	88863900	+	0	NA	Intergenic	Intergenic	155832	NR_038385	728084		NR_038385	ENSG00000246363	LINC02458	-	long intergenic non-protein coding RNA 2458	ncRNA
108503	chr18	74108501	74108700	+	0	NA	intron (NM_001142958, intron 8 of 9)	L1MCa|LINE|L1	39234	NM_152676	201456		NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding
51246	chr12	51010901	51011400	+	0	NA	intron (NM_001174125, intron 1 of 15)	AluSc8|SINE|Alu	-1935	NM_001379448	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
205924	chr7	25856601	25857700	+	0	NA	Intergenic	CpG	-67031	NR_157808	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
158142	chr22	50181521	50181780	+	0	NA	Intergenic	MER74A|LTR|ERVL	-4263	NR_135275	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
74480	chr15	59976051	59976950	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-27811	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
114609	chr19	12963401	12963600	+	0	NA	Intergenic	AluY|SINE|Alu	-6118	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
87112	chr16	68704321	68704680	+	0	NA	Intergenic	Intergenic	-32792	NM_001317184	999		NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
111089	chr19	3184781	3186900	+	0	NA	promoter-TSS (NM_001321463)	promoter-TSS (NM_001321463)	-90	NM_001321463	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
202713	chr6	158848071	158848930	+	0	NA	intron (NR_028496, intron 2 of 2)	AluSg7|SINE|Alu	9132	NR_028496	202459		NM_145303	ENSG00000293101	OSTCP1	DC2L|OSTCL	oligosaccharyltransferase complex subunit pseudogene 1	pseudo
22109	chr1	211677551	211678030	+	0	NA	intron (NR_148994, intron 2 of 3)	intron (NR_148994, intron 2 of 3)	2028	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
80029	chr16	1945401	1946300	+	0	NA	exon (NM_005061, exon 8 of 10)	exon (NM_005061, exon 8 of 10)	-2651	NM_001382264	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
184437	chr5	99032371	99032730	+	0	NA	Intergenic	Intergenic	103416	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
10074	chr1	58779131	58780470	+	0	NA	TTS (NM_002228)	TTS (NM_002228)	4247	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
50469	chr12	47766171	47766330	+	0	NA	Intergenic	Intergenic	-6988	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
46097	chr11	122853751	122854400	+	0	NA	exon (NM_019604, exon 4 of 10)	exon (NM_019604, exon 4 of 10)	-8256	NM_001304782	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
27743	chr10	35149251	35150230	+	0	NA	intron (NM_001352467, intron 2 of 3)	intron (NM_001352467, intron 2 of 3)	11958	NM_183011	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
184896	chr5	112862571	112862930	+	0	NA	intron (NM_001204194, intron 2 of 3)	intron (NM_001204194, intron 2 of 3)	1463	NM_001204199	6728		NM_003135	ENSG00000153037	SRP19	-	signal recognition particle 19	protein-coding
218283	chr8	42305851	42306150	+	0	NA	intron (NM_001190720, intron 5 of 20)	intron (NM_001190720, intron 5 of 20)	-32494	NM_002690	5423		NM_002690	ENSG00000070501	POLB	-	DNA polymerase beta	protein-coding
193715	chr6	31185971	31186330	+	0	NA	non-coding (NR_026816, exon 1 of 4).5	non-coding (NR_026816, exon 1 of 4).5	167	NR_152836	100130889		NM_001134284		PSORS1C3	NCRNA00196	psoriasis susceptibility 1 candidate 3	ncRNA
117535	chr19	20660821	20662080	+	0	NA	5' UTR (NM_001076675, exon 1 of 4)	5' UTR (NM_001076675, exon 1 of 4)	121	NM_001076675	199777		NM_145297	ENSG00000188171	ZNF626	-	zinc finger protein 626	protein-coding
224332	chr9	6761321	6761750	+	0	NA	intron (NR_148677, intron 1 of 21)	AluJo|SINE|Alu	3562	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
215208	chr7	155814871	155815700	+	0	NA	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-2822	NM_000193	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
99622	chr17	50561801	50562600	+	0	NA	promoter-TSS (NR_038439)	promoter-TSS (NR_038439)	-92	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
230706	chr9	128777871	128778430	+	0	NA	Intergenic	AluYf1|SINE|Alu	-5664	NM_001375956	10444		NM_006336	ENSG00000160445	ZER1	C9orf60|ZYG|ZYG11BL	zyg-11 related cell cycle regulator	protein-coding
214052	chr7	143379151	143379450	+	0	NA	non-coding (NR_161353, exon 2 of 2)	non-coding (NR_161353, exon 2 of 2)	1725	NR_161353	100507507		NR_161353		FAM131B-AS2	-	FAM131B antisense RNA 2	ncRNA
218912	chr8	60773071	60773430	+	0	NA	intron (NM_001316690, intron 1 of 4)	intron (NM_001316690, intron 1 of 4)	31991	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
132683	chr2	108833151	108833650	+	0	NA	intron (NM_001351559, intron 10 of 11)	L1MC2|LINE|L1	46629	NR_147236	165055		NM_144978	ENSG00000163006	CCDC138	-	coiled-coil domain containing 138	protein-coding
204260	chr7	2629151	2629450	+	0	NA	Intergenic	AluSx|SINE|Alu	-2686	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
138761	chr2	215931301	215931630	+	0	NA	Intergenic	Intergenic	82086	NM_001372188	55686		NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding
93053	chr17	17416201	17416880	+	0	NA	Intergenic	Intergenic	-60460	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
20845	chr1	201828851	201829900	+	0	NA	non-coding (NR_046696, exon 1 of 3)	non-coding (NR_046696, exon 1 of 3)	184	NR_046696	100873949		NR_046696	ENSG00000231871	IPO9-AS1	-	IPO9 antisense RNA 1	ncRNA
222578	chr8	140632351	140632850	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	3033	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
150372	chr21	42232201	42232800	+	0	NA	intron (NM_207628, intron 4 of 16)	MamRep605|LTR?|LTR?	12602	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
199025	chr6	111210151	111210600	+	0	NA	intron (NM_018593, intron 4 of 5)	intron (NM_018593, intron 4 of 5)	-48964	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
138490	chr2	207133901	207134300	+	0	NA	promoter-TSS (NM_001270944)	promoter-TSS (NM_001270944)	37	NM_001270944	8609		NM_003709	ENSG00000118263	KLF7	UKLF	KLF transcription factor 7	protein-coding
189505	chr5	173245401	173245800	+	0	NA	Intergenic	CpG	-10394	NM_004387	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
19362	chr1	173861551	173862300	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1323	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
211213	chr7	102627001	102627580	+	0	NA	Intergenic	Intergenic	-10532	NM_001079877	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
95501	chr17	36353401	36353600	+	0	NA	Intergenic	Intergenic	29616	NM_001291462	101060321		NM_001291462	ENSG00000260287	TBC1D3G	TBC1D3C|TBC1D3D	TBC1 domain family member 3G	protein-coding
91509	chr17	4946401	4946600	+	0	NA	exon (NM_001375991, exon 2 of 2)	exon (NM_001375991, exon 2 of 2)	2030	NM_001375991	5216		NM_005022	ENSG00000108518	PFN1	ALS18	profilin 1	protein-coding
4832	chr1	23628771	23629380	+	0	NA	intron (NR_167910, intron 3 of 5)	L2a|LINE|L2	1741	NR_167904	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
14974	chr1	147997771	147998900	+	0	NA	intron (NR_111936, intron 7 of 9)	intron (NR_111936, intron 7 of 9)	16621	NR_111936	100034743		NR_003377		PDZK1P1	PDZK1P2	PDZ domain containing 1 pseudogene 1	pseudo
84929	chr16	31262421	31262680	+	0	NA	intron (NM_000632, intron 2 of 29)	AluJr|SINE|Alu	2575	NM_000632	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
202614	chr6	158736471	158736830	+	0	NA	intron (NM_001318745, intron 8 of 14)	AluSq2|SINE|Alu	28103	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
72202	chr15	30162851	30163250	+	0	NA	Intergenic	L2b|LINE|L2	-17503	NR_157594	102725021		NR_157593		ARHGAP11B-DT	-	ARHGAP11B divergent transcript	ncRNA
211982	chr7	113087501	113087850	+	0	NA	promoter-TSS (NM_001146267)	promoter-TSS (NM_001146267)	49	NM_018970	54329		NM_018970	ENSG00000164604	GPR85	SREB|SREB2	G protein-coupled receptor 85	protein-coding
201805	chr6	150006371	150006530	+	0	NA	Intergenic	Intergenic	-1306	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
198153	chr6	90609601	90609900	+	0	NA	Intergenic	Intergenic	-22678	NM_145332	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
105949	chr18	3643701	3644080	+	0	NA	intron (NM_001242765, intron 4 of 8)	L1ME4b|LINE|L1	40153	NR_119377	84777		NM_032691		DLGAP1-AS2	DLPAP1-AS2	DLGAP1 antisense RNA 2	ncRNA
235947	chrX	53287471	53288650	+	0	NA	intron (NM_001111125, intron 2 of 14)	intron (NM_001111125, intron 2 of 14)	-6476	NM_001243197	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
161915	chr3	45992901	45993180	+	0	NA	intron (NM_024513, intron 1 of 17)	intron (NM_024513, intron 1 of 17)	2784	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
33848	chr10	124233001	124233630	+	0	NA	Intergenic	Intergenic	-139717	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
80197	chr16	2144201	2144650	+	0	NA	Intergenic	Intergenic	-3719	NM_001308053	25837		NM_014353	ENSG00000167964	RAB26	V46133	RAB26, member RAS oncogene family	protein-coding
184868	chr5	112356671	112356830	+	0	NA	intron (NM_022140, intron 1 of 22)	ERVL-E-int|LTR|ERVL	62527	NR_144931	64097		NM_022140	ENSG00000129595	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
159705	chr3	15631701	15631900	+	0	NA	intron (NM_001281724, intron 3 of 5)	L2|LINE|L2	29831	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
46129	chr11	123034871	123035230	+	0	NA	Intergenic	Intergenic	17484	NR_027288	341056		NR_027288		SAE1P1	-	SAE1 pseudogene 1	pseudo
17357	chr1	156503451	156503550	+	0	NA	Intergenic	Intergenic	-2725	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
18496	chr1	161663351	161664000	+	0	NA	intron (NM_001190828, intron 1 of 6)	intron (NM_001190828, intron 1 of 6)	560	NM_001002275	2213		NM_004001	ENSG00000072694	FCGR2B	CD32|CD32B|FCG2|FCGR2|FCGR2C|FcGRIIB|FcRII-c|FcgammaRIIb|IGFR2	Fc gamma receptor IIb	protein-coding
94367	chr17	28916201	28916850	+	0	NA	intron (NM_020889, intron 7 of 8)	intron (NM_020889, intron 7 of 8)	-9750	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
164132	chr3	56724651	56725700	+	0	NA	Intergenic	Intergenic	-41910	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
68262	chr14	77033401	77034530	+	0	NA	non-coding (NR_169510, exon 1 of 2)	non-coding (NR_169510, exon 1 of 2)	241	NR_169510	105370579		NR_169510		LOC105370579	-	uncharacterized LOC105370579	ncRNA
172162	chr4	1219221	1219750	+	0	NA	TTS (NR_104331)	TTS (NR_104331)	9365	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
231165	chr9	129885501	129886600	+	0	NA	Intergenic	Intergenic	16445	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
202136	chr6	154995221	154995780	+	0	NA	intron (NM_012454, intron 1 of 26)	CpG	185	NM_012454	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
216718	chr8	22369601	22369800	+	0	NA	intron (NM_001135153, intron 1 of 8)	intron (NM_001135153, intron 1 of 8)	2162	NM_001135153	23516		NM_015359	ENSG00000104635	SLC39A14	HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
113251	chr19	8501351	8502130	+	0	NA	intron (NM_032152, intron 1 of 9)	intron (NM_032152, intron 1 of 9)	900	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
33141	chr10	112380251	112380700	+	0	NA	intron (NM_016234, intron 1 of 20)	intron (NM_016234, intron 1 of 20)	4277	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
55997	chr12	110297351	110297850	+	0	NA	intron (NM_170665, intron 5 of 19)	intron (NM_170665, intron 5 of 19)	16353	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
123204	chr19	52715651	52716500	+	0	NA	intron (NM_001161500, intron 2 of 4)	intron (NM_001161500, intron 2 of 4)	13807	NM_030972	81856		NM_030972	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
213562	chr7	139133301	139134280	+	0	NA	promoter-TSS (NM_024926)	promoter-TSS (NM_024926)	12	NM_001144923	79989		NM_024926	ENSG00000105948	IFT56	BRENS|DYF13|TTC26|dyf-13	intraflagellar transport 56	protein-coding
186189	chr5	134215121	134215850	+	0	NA	intron (NM_002715, intron 1 of 6)	AluSz|SINE|Alu	10069	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
168985	chr3	152407201	152407400	+	0	NA	intron (NM_001314057, intron 3 of 11)	intron (NM_001314057, intron 3 of 11)	-66310	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
14627	chr1	145461071	145461230	+	0	NA	Intergenic	Intergenic	-55372	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
102630	chr17	76011751	76012250	+	0	NA	intron (NM_001320747, intron 19 of 21)	intron (NM_001320747, intron 19 of 21)	11094	NM_001258	1018		NM_001258	ENSG00000250506	CDK3	-	cyclin dependent kinase 3	protein-coding
5541	chr1	25820501	25822300	+	0	NA	non-coding (NR_024498, exon 1 of 1)	non-coding (NR_024498, exon 1 of 1)	572	NM_001099626	56181		NM_019557	ENSG00000117640	MTFR1L	FAM54B|HYST1888|MST116|MSTP116	mitochondrial fission regulator 1 like	protein-coding
162854	chr3	49339171	49341280	+	0	NA	promoter-TSS (NM_003363)	promoter-TSS (NM_003363)	-172	NM_001251877	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
67173	chr14	68812201	68812400	+	0	NA	Intergenic	L1MC5|LINE|L1	-16057	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
60945	chr13	46389971	46390380	+	0	NA	promoter-TSS (NM_001286761)	promoter-TSS (NM_001286761)	-133	NM_001286761	80183		NM_025113	ENSG00000102445	RUBCNL	C13orf18|KIAA0226L|PACER	rubicon like autophagy enhancer	protein-coding
114731	chr19	13194221	13194980	+	0	NA	Intergenic	AluSp|SINE|Alu	44189	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
21217	chr1	204103651	204103750	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	30585	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
157958	chr22	49809501	49809930	+	0	NA	intron (NM_001304808, intron 2 of 12)	L1MEd|LINE|L1	14616	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
68591	chr14	89506121	89506580	+	0	NA	intron (NM_001085471, intron 1 of 6)	SVA_D|Retroposon|SVA	-69866	NR_024620	29018		NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
223007	chr8	143278421	143279730	+	0	NA	Intergenic	CpG	2625	NR_120683	100507316		NR_120682	ENSG00000253716	MINCR	LINC01604	MYC-induced long non-coding RNA	ncRNA
124933	chr2	8573601	8573800	+	0	NA	intron (NR_110257, intron 4 of 5)	intron (NR_110257, intron 4 of 5)	10092	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
15785	chr1	151198001	151199330	+	0	NA	5' UTR (NM_001330689, exon 1 of 15)	5' UTR (NM_001330689, exon 1 of 15)	113	NM_003557	8394		NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein-coding
34597	chr10	133261601	133263250	+	0	NA	TTS (NM_001164489)	TTS (NM_001164489)	14443	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
48142	chr12	7913421	7913800	+	0	NA	Intergenic	Intergenic	-22414	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
99275	chr17	49750251	49750350	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	13831	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
70553	chr14	102546021	102546280	+	0	NA	intron (NR_146561, intron 1 of 2)	intron (NR_146561, intron 1 of 2)	896	NR_146561	105370681		NR_146561	ENSG00000259230	LINC02323	-	long intergenic non-protein coding RNA 2323	ncRNA
39905	chr11	62511871	62512550	+	0	NA	intron (NM_024060, intron 4 of 5)	LTR33|LTR|ERVL	33454	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
189164	chr5	171396921	171397730	+	0	NA	intron (NM_002520, intron 6 of 10)	L1MB8|LINE|L1	9476	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
2751	chr1	10680651	10681150	+	0	NA	intron (NM_017766, intron 4 of 15)	AluSx1|SINE|Alu	115746	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
205042	chr7	6545651	6545950	+	0	NA	intron (NM_001145118, intron 1 of 21)	intron (NM_001145118, intron 1 of 21)	5636	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
118313	chr19	35508051	35508350	+	0	NA	intron (NM_001126056, intron 7 of 17)	intron (NM_001126056, intron 7 of 17)	2270	NR_147958	93099		NM_033317	ENSG00000161249	DMKN	UNQ729|ZD52F10	dermokine	protein-coding
158393	chr22	50514301	50514500	+	0	NA	intron (NM_014551, intron 1 of 8)	intron (NM_014551, intron 1 of 8)	6176	NM_001185011	29781		NM_014551	ENSG00000025770	NCAPH2	CAPH2	non-SMC condensin II complex subunit H2	protein-coding
157608	chr22	46044021	46045800	+	0	NA	promoter-TSS (NR_027036)	promoter-TSS (NR_027036)	-42	NR_027036	100271722		NR_027036		LINC00899	-	long intergenic non-protein coding RNA 899	ncRNA
42819	chr11	72826601	72827180	+	0	NA	intron (NM_033388, intron 13 of 17)	intron (NM_033388, intron 13 of 17)	12479	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
94678	chr17	30478751	30479280	+	0	NA	intron (NM_001007024, intron 1 of 8)	MIR|SINE|MIR	1607	NM_001007024	9527		NM_004871	ENSG00000108587	GOSR1	GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28	golgi SNAP receptor complex member 1	protein-coding
32887	chr10	110152321	110152900	+	0	NA	promoter-TSS (NR_164121)	promoter-TSS (NR_164121)	-630	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
137036	chr2	190791751	190792250	+	0	NA	Intergenic	Intergenic	-88821	NM_001256310	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
135197	chr2	158745671	158745850	+	0	NA	Intergenic	Intergenic	-10758	NR_135242	100129029		NR_135242	ENSG00000204380	PKP4-AS1	-	PKP4 antisense RNA 1	ncRNA
205199	chr7	7739351	7739650	+	0	NA	intron (NM_001302350, intron 3 of 4)	intron (NM_001302350, intron 3 of 4)	-20893	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
111383	chr19	3722551	3723450	+	0	NA	intron (NM_001267561, intron 1 of 20)	intron (NM_001267561, intron 1 of 20)	1263	NM_001267561	27134		NM_014428	ENSG00000105289	TJP3	ZO-3|ZO3	tight junction protein 3	protein-coding
45386	chr11	118316401	118317700	+	0	NA	TTS (NM_000733)	TTS (NM_000733)	12320	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
64045	chr14	22534171	22534330	+	0	NA	Intergenic	Intergenic	22812	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
213475	chr7	139037951	139038850	+	0	NA	Intergenic	Intergenic	-2358	NM_080660	92092		NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding
38548	chr11	45913871	45914330	+	0	NA	intron (NM_057174, intron 8 of 10)	intron (NM_057174, intron 8 of 10)	3777	NM_057174	9409		NM_004813	ENSG00000121680	PEX16	PBD8A|PBD8B	peroxisomal biogenesis factor 16	protein-coding
145560	chr20	44248001	44248380	+	0	NA	intron (NR_046353, intron 1 of 3)	intron (NR_046353, intron 1 of 3)	882	NM_024034	78997		NM_024034	ENSG00000124194	GDAP1L1	dJ881L22.1|dJ995J12.1.1	ganglioside induced differentiation associated protein 1 like 1	protein-coding
211495	chr7	105213951	105214450	+	0	NA	intron (NM_001350741, intron 2 of 16)	intron (NM_001350741, intron 2 of 16)	54877	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
172078	chr4	1036621	1037380	+	0	NA	Intergenic	Intergenic	24536	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
91421	chr17	4716451	4716900	+	0	NA	intron (NM_001257328, intron 5 of 14)	intron (NM_001257328, intron 5 of 14)	6043	NM_199004	409		NM_004313	ENSG00000141480	ARRB2	ARB2|ARR2|BARR2	arrestin beta 2	protein-coding
95429	chr17	36115451	36116350	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	12073	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
223834	chr8	145002201	145003520	+	0	NA	promoter-TSS (NR_023392)	promoter-TSS (NR_023392)	39	NR_023392	286101		NR_023392		ZNF252P	ZNF252	zinc finger protein 252, pseudogene	pseudo
218698	chr8	58567251	58567900	+	0	NA	intron (NM_001007069, intron 2 of 8)	L1MC1|LINE|L1	14314	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
69385	chr14	94036401	94037230	+	0	NA	intron (NM_023112, intron 1 of 5)	intron (NM_023112, intron 1 of 5)	10475	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
35116	chr11	682051	682350	+	0	NA	intron (NM_001367390, intron 6 of 11)	L1M4b|LINE|L1	13022	NM_021008	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
89807	chr16	89541051	89541750	+	0	NA	intron (NM_003119, intron 9 of 16)	L1MD2|LINE|L1	-19257	NM_001243131	6137		NM_000977	ENSG00000167526	RPL13	BBC1|D16S444E|D16S44E|L13|SEMDIST|eL13	ribosomal protein L13	protein-coding
49079	chr12	14430701	14430900	+	0	NA	intron (NM_001286515, intron 2 of 12)	MER58A|DNA|hAT-Charlie	45519	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
147399	chr20	58715851	58716350	+	0	NA	TTS (NM_024663)	TTS (NM_024663)	23300	NM_024663	79716		NM_024663	ENSG00000215440	NPEPL1	bA261P9.2	aminopeptidase like 1	protein-coding
99755	chr17	50956721	50957680	+	0	NA	Intergenic	Intergenic	-89222	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
71312	chr14	105363701	105364930	+	0	NA	intron (NM_001243127, intron 4 of 23)	CpG	-34223	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
132298	chr2	105143721	105144780	+	0	NA	intron (NR_136172, intron 1 of 2)	CpG	137	NR_136172	105373984		NR_136172	ENSG00000226508	LINC01918	-	long intergenic non-protein coding RNA 1918	ncRNA
92932	chr17	16751371	16751880	+	0	NA	intron (NR_130142, intron 11 of 15)	L1PA16|LINE|L1	-35267	NR_003190	162632		NR_003190	ENSG00000290976	USP32P1	-	ubiquitin specific peptidase 32 pseudogene 1	pseudo
71588	chr14	106510001	106510200	+	0	NA	Intergenic	LTR76|LTR|ERV1	27661	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
234636	chrX	19945751	19945930	+	0	NA	intron (NM_001367774, intron 7 of 10)	L1PA2|LINE|L1	24424	NM_001367774	256643		NM_198279	ENSG00000173681	BCLAF3	CXorf23	BCLAF1 and THRAP3 family member 3	protein-coding
145689	chr20	45007501	45007700	+	0	NA	intron (NM_006282, intron 9 of 10)	MIRb|SINE|MIR	41088	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
116394	chr19	17957571	17957730	+	0	NA	intron (NM_002248, intron 2 of 10)	L2b|LINE|L2	6348	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
134130	chr2	134151251	134151550	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	24275	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
156314	chr22	40635101	40635330	+	0	NA	intron (NM_001282661, intron 1 of 13)	intron (NM_001282661, intron 1 of 13)	1504	NM_020831	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
217303	chr8	27386271	27387080	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	-46695	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
82985	chr16	21991371	21991730	+	0	NA	intron (NM_173806, intron 1 of 2)	intron (NM_173806, intron 1 of 2)	9566	NM_001370530	255762		NM_173806	ENSG00000155714	PDZD9	C16orf65	PDZ domain containing 9	protein-coding
155561	chr22	38727351	38727680	+	0	NA	intron (NM_004286, intron 9 of 11)	intron (NM_004286, intron 9 of 11)	21571	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
4809	chr1	23597521	23598050	+	0	NA	Intergenic	Intergenic	-29549	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
63891	chr14	21852951	21853050	+	0	NA	Intergenic	Intergenic	-181983	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
63405	chr13	114077201	114077580	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	565	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
236433	chrX	71492071	71493130	+	0	NA	promoter-TSS (NR_002226)	promoter-TSS (NR_002226)	150	NR_104396	6872		NM_004606	ENSG00000147133	TAF1	BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|MRXS33|N-TAF1|NSCL2|OF|P250|TAF(II)250|TAF2A|TAFII-250|TAFII250|XDP	TATA-box binding protein associated factor 1	protein-coding
121427	chr19	47020471	47021830	+	0	NA	exon (NM_002517, exon 2 of 12)	exon (NM_002517, exon 2 of 12)	1313	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
110739	chr19	2326851	2326950	+	0	NA	intron (NM_016199, intron 2 of 3)	MLT1E1|LTR|ERVL-MaLR	1686	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
22936	chr1	225973271	225973800	+	0	NA	Intergenic	Intergenic	25808	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
115467	chr19	15354171	15354530	+	0	NA	3' UTR (NM_005858, exon 14 of 14)	3' UTR (NM_005858, exon 14 of 14)	-21811	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
145717	chr20	45039451	45040250	+	0	NA	intron (NM_006282, intron 10 of 10)	Charlie1a|DNA|hAT-Charlie	61277	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
160473	chr3	30548601	30548930	+	0	NA	Intergenic	MER61C|LTR|ERV1	29897	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
175126	chr4	55312521	55312780	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-33592	NM_024592	79644		NM_024592	ENSG00000128039	SRD5A3	CDG1P|CDG1Q|KRIZI|S5AR|S5AR 3|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
208335	chr7	66292321	66292630	+	0	NA	intron (NM_003596, intron 3 of 5)	L1HS|LINE|L1	87141	NM_003596	8460		NM_003596	ENSG00000169902	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
173886	chr4	24569501	24570080	+	0	NA	intron (NM_001358, intron 3 of 13)	FAM|SINE|Alu	14764	NM_001358	1665		NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|PRP43|PRPF43|PrPp43p|hPrp43	DEAH-box helicase 15	protein-coding
63198	chr13	113789221	113790030	+	0	NA	intron (NM_001348663, intron 3 of 7)	intron (NM_001348663, intron 3 of 7)	-25985	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
94169	chr17	28385521	28385850	+	0	NA	intron (NM_015077, intron 5 of 8)	L2c|LINE|L2	13991	NM_015077	23098		NM_015077	ENSG00000004139	SARM1	HsTIR|MyD88-5|SAMD2|SARM|hSARM1	sterile alpha and TIR motif containing 1	protein-coding
58033	chr12	124437871	124438400	+	0	NA	intron (NM_001077261, intron 9 of 47)	intron (NM_001077261, intron 9 of 47)	-100893	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
90710	chr17	1829071	1831800	+	0	NA	promoter-TSS (NM_052928)	promoter-TSS (NM_052928)	430	NM_001355121	6117		NM_002945	ENSG00000132383	RPA1	HSSB|MST075|PFBMFT6|REPA1|RF-A|RP-A|RPA70	replication protein A1	protein-coding
17159	chr1	156204501	156204700	+	0	NA	intron (NM_001377390, intron 3 of 3)	AluSq2|SINE|Alu	-8388	NM_001199663	100527963		NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF-1|PMF1	PMF1-BGLAP readthrough	protein-coding
188197	chr5	150659551	150659980	+	0	NA	TTS (NM_007286)	TTS (NM_007286)	-1076	NM_133371	91977		NM_133371	ENSG00000164591	MYOZ3	CS-3|CS3|FATZ-3|FRP3	myozenin 3	protein-coding
46327	chr11	125433551	125433650	+	0	NA	TTS (NR_168083)	TTS (NR_168083)	-61614	NR_164146	403312		NM_203452	ENSG00000255537	LOC403312	-	putative uncharacterized protein MGC39545	ncRNA
112869	chr19	7605121	7606530	+	0	NA	intron (NM_020902, intron 2 of 16)	intron (NM_020902, intron 2 of 16)	9962	NM_001080429	57662		NM_020902	ENSG00000076826	CAMSAP3	KIAA1543|NEZHA|PPP1R80	calmodulin regulated spectrin associated protein family member 3	protein-coding
74266	chr15	57132951	57133250	+	0	NA	intron (NM_207038, intron 5 of 19)	intron (NM_207038, intron 5 of 19)	-86330	NM_001306220	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
80399	chr16	2586151	2586480	+	0	NA	intron (NM_031268, intron 7 of 10)	intron (NM_031268, intron 7 of 10)	-17069	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
31623	chr10	97380501	97380980	+	0	NA	intron (NM_015179, intron 13 of 33)	L2c|LINE|L2	20600	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
47530	chr12	4250701	4251730	+	0	NA	intron (NR_125790, intron 1 of 1)	MIR|SINE|MIR	-22547	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
227778	chr9	93122951	93123350	+	0	NA	intron (NM_004148, intron 3 of 3)	intron (NM_004148, intron 3 of 3)	11101	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
16916	chr1	155891001	155891200	+	0	NA	Intergenic	AluSq2|SINE|Alu	19818	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
189932	chr5	177388051	177388480	+	0	NA	intron (NM_003052, intron 7 of 12)	intron (NM_003052, intron 7 of 12)	3831	NM_003052	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
173507	chr4	9532131	9533030	+	0	NA	Intergenic	CpG	23736	NR_031688	100302277		NR_031688	ENSG00000221275	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2	microRNA 548i-2	ncRNA
112735	chr19	7348551	7349400	+	0	NA	promoter-TSS (NM_001367823)	promoter-TSS (NM_001367823)	38	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
120753	chr19	45406101	45407480	+	0	NA	promoter-TSS (NM_001142502)	promoter-TSS (NM_001142502)	146	NM_012099	10849		NM_012099	ENSG00000117877	POLR1G	ASE-1|ASE1|CAST|CD3EAP|PAF49|RPA34	RNA polymerase I subunit G	protein-coding
188222	chr5	150760551	150760650	+	0	NA	Intergenic	Intergenic	-1505	NM_001135643	51164		NM_016221	ENSG00000132912	DCTN4	DYN4|P62	dynactin subunit 4	protein-coding
117652	chr19	23823951	23824250	+	0	NA	intron (NR_149350, intron 3 of 3)	LTR4|LTR|ERV1	61096	NR_149351	388524		NM_001005472	ENSG00000288920	RPSA2	37LRP|67LR|LBP/p40|LRP/LR|LamR|RPSAP58|RPSA_30_1642	ribosomal protein SA 2	protein-coding
4	chr1	14451	14550	+	0	NA	TTS (NR_046018)	TTS (NR_046018)	2626	NR_046018	100287102		NR_046018	ENSG00000290825	DDX11L1	-	DEAD/H-box helicase 11 like 1 (pseudogene)	pseudo
65762	chr14	54393471	54394280	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2993	NM_001330173	1033		NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
8193	chr1	39572701	39573480	+	0	NA	non-coding (NR_125979, exon 4 of 4)	non-coding (NR_125979, exon 4 of 4)	3700	NM_001135654	8761		NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
181923	chr5	54865501	54865700	+	0	NA	Intergenic	LTR12C|LTR|ERV1	119993	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
166641	chr3	119701621	119701880	+	0	NA	Intergenic	L1MC5a|LINE|L1	-1272	NM_001320317	89876		NM_033364	ENSG00000183833	CFAP91	AAT1|AAT1alpha|C3orf15|CaM-IP2|MAATS1|SPATA26|SPGF51	cilia and flagella associated protein 91	protein-coding
212107	chr7	116208901	116209880	+	0	NA	Intergenic	Intergenic	-1149	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
190056	chr5	177593351	177593450	+	0	NA	intron (NM_017510, intron 2 of 4)	Charlie18a|DNA|hAT-Charlie	1197	NM_017510	54732		NM_017510	ENSG00000184840	TMED9	GMP25|HSGP25L2G|p24a2|p24alpha2|p25	transmembrane p24 trafficking protein 9	protein-coding
23991	chr1	235231821	235232080	+	0	NA	intron (NM_016374, intron 9 of 23)	AluJr4|SINE|Alu	-41834	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
165220	chr3	72961821	72962100	+	0	NA	intron (NR_138564, intron 5 of 6)	intron (NR_138564, intron 5 of 6)	-34783	NM_001318026	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
93786	chr17	20280021	20280280	+	0	NA	intron (NM_001033555, intron 10 of 12)	L1ME3G|LINE|L1	-41024	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
97584	chr17	44102871	44103030	+	0	NA	intron (NM_001382393, intron 3 of 26)	AluSc8|SINE|Alu	-12962	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
42443	chr11	69301471	69302200	+	0	NA	Intergenic	Intergenic	7680	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
222986	chr8	143243071	143243900	+	0	NA	Intergenic	L1MC4|LINE|L1	-3454	NM_001271156	286128		NM_173832	ENSG00000181638	ZFP41	ZNF753|zfp-41	ZFP41 zinc finger protein	protein-coding
206480	chr7	33049921	33050180	+	0	NA	intron (NM_001374336, intron 1 of 10)	intron (NM_001374336, intron 1 of 10)	-9144	NM_001166118	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
62836	chr13	109779101	109780530	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	6768	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
63356	chr13	114036621	114036950	+	0	NA	intron (NM_001320822, intron 4 of 23).2	AluSp|SINE|Alu	41170	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
146207	chr20	48783551	48784450	+	0	NA	intron (NM_020820, intron 1 of 39)	Tigger18a|DNA|TcMar-Tigger	43999	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
53219	chr12	62283471	62283850	+	0	NA	intron (NM_001351164, intron 1 of 21)	L1M5|LINE|L1	23256	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
107885	chr18	56648001	56648400	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-3159	NM_015285	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
110865	chr19	2619471	2619730	+	0	NA	intron (NM_052847, intron 2 of 4)	L1MB7|LINE|L1	-11115	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
117902	chr19	32747871	32748100	+	0	NA	intron (NM_001366102, intron 4 of 32)	AluJo|SINE|Alu	28218	NM_001366102	91646		NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
218666	chr8	57953701	57954100	+	0	NA	Intergenic	Charlie24|DNA|hAT-Charlie	-24458	NR_130934	100505477		NR_130934	ENSG00000205293	LINC01602	T1560	long intergenic non-protein coding RNA 1602	ncRNA
54751	chr12	93881021	93881680	+	0	NA	intron (NR_135147, intron 3 of 3)	intron (NR_135147, intron 3 of 3)	62256	NR_135017	105369911		NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
110601	chr19	2178721	2179180	+	0	NA	intron (NM_032482, intron 1 of 27)	intron (NM_032482, intron 1 of 27)	15017	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
118160	chr19	35023171	35023750	+	0	NA	exon (NM_001320035, exon 17 of 18)	exon (NM_001320035, exon 17 of 18)	-7010	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
120654	chr19	45082471	45082630	+	0	NA	intron (NM_001007270, intron 2 of 2)	L2b|LINE|L2	3290	NM_001007269	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
67008	chr14	67470221	67470480	+	0	NA	TTS (NM_182526)	TTS (NM_182526)	18371	NM_001348542	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
147093	chr20	53855551	53855850	+	0	NA	Intergenic	AluSx|SINE|Alu	20009	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
164964	chr3	71273101	71273500	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-16458	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
101235	chr17	66193671	66193830	+	0	NA	Intergenic	(ATTTTC)n|Simple_repeat|Simple_repeat	-1617	NM_001199165	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
132266	chr2	104658671	104658830	+	0	NA	Intergenic	Intergenic	98969	NR_038231	284998		NR_038231	ENSG00000234177	LINC01114	PANCAT	long intergenic non-protein coding RNA 1114	ncRNA
137584	chr2	197271371	197271750	+	0	NA	intron (NR_046837, intron 5 of 5)	MER112|DNA|hAT-Charlie	30959	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
185761	chr5	132270671	132270830	+	0	NA	intron (NM_001131027, intron 3 of 5)	intron (NM_001131027, intron 3 of 5)	13054	NM_003687	8572		NM_003687	ENSG00000131435	PDLIM4	RIL	PDZ and LIM domain 4	protein-coding
123810	chr19	55167671	55168080	+	0	NA	Intergenic	Intergenic	-1153	NM_001256714	352909		NM_178837	ENSG00000167646	DNAAF3	C19orf51|CILD2|DAB1|PCD|PF22	dynein axonemal assembly factor 3	protein-coding
182608	chr5	66151121	66151380	+	0	NA	intron (NM_139168, intron 1 of 12)	MLT1I|LTR|ERVL-MaLR	6415	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
144318	chr20	34873951	34874850	+	0	NA	promoter-TSS (NM_001242393)	promoter-TSS (NM_001242393)	-563	NM_001242393	55902		NM_018677	ENSG00000131069	ACSS2	ACAS2|ACECS|ACS|ACSA|AceCS1|dJ1161H23.1	acyl-CoA synthetase short chain family member 2	protein-coding
156087	chr22	40054871	40056050	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	10643	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
104183	chr17	80425651	80425750	+	0	NA	intron (NR_148043, intron 5 of 5)	intron (NR_148043, intron 5 of 5)	6282	NR_039883	100616359		NR_039883	ENSG00000264961	MIR4730	-	microRNA 4730	ncRNA
22307	chr1	213089821	213090280	+	0	NA	intron (NM_001349671, intron 4 of 12)	intron (NM_001349671, intron 4 of 12)	38809	NM_012424	26750		NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
168492	chr3	143363021	143363500	+	0	NA	intron (NM_173653, intron 14 of 15)	intron (NM_173653, intron 14 of 15)	21014	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
172934	chr4	3514901	3515700	+	0	NA	intron (NR_110005, intron 6 of 7)	intron (NR_110005, intron 6 of 7)	16849	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
203356	chr6	170302001	170302530	+	0	NA	intron (NM_001286380, intron 1 of 10)	THE1C|LTR|ERVL-MaLR	-4457	NM_001286381	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
115838	chr19	16518821	16519080	+	0	NA	TTS (NM_001288834)	TTS (NM_001288834)	22556	NM_032207	84167		NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
237928	chrX	132090851	132090950	+	0	NA	intron (NM_194277, intron 5 of 11)	intron (NM_194277, intron 5 of 11)	37120	NM_194277	90167		NM_194277	ENSG00000165694	FRMD7	NYS|NYS1|XIPAN	FERM domain containing 7	protein-coding
11593	chr1	91570771	91570930	+	0	NA	Intergenic	FLAM_A|SINE|Alu	69742	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
23782	chr1	233328201	233329050	+	0	NA	exon (NM_032435, exon 1 of 10)	exon (NM_032435, exon 1 of 10)	901	NM_032435	84451		NM_032435	ENSG00000143674	MAP3K21	MLK4|dJ862P8.3	mitogen-activated protein kinase kinase kinase 21	protein-coding
185490	chr5	131303901	131304500	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluJo|SINE|Alu	40147	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
120904	chr19	45598271	45598900	+	0	NA	intron (NM_005282, intron 1 of 1)	intron (NM_005282, intron 1 of 1)	3627	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
110951	chr19	2888551	2889580	+	0	NA	Intergenic	CpG	-11863	NM_173480	126295		NM_173480	ENSG00000171970	ZNF57	ZNF424	zinc finger protein 57	protein-coding
217009	chr8	23172271	23173630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8923	NM_003840	8793		NM_003840	ENSG00000173530	TNFRSF10D	CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD	TNF receptor superfamily member 10d	protein-coding
229675	chr9	124491451	124491750	+	0	NA	intron (NM_004959, intron 5 of 6)	intron (NM_004959, intron 5 of 6)	15799	NM_004959	2516		NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1	nuclear receptor subfamily 5 group A member 1	protein-coding
207513	chr7	44799851	44800480	+	0	NA	intron (NM_021130, intron 4 of 4)	AluSx|SINE|Alu	3484	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
18285	chr1	161126221	161126480	+	0	NA	TTS (NM_001185092)	TTS (NM_001185092)	6116	NM_001039712	9191		NM_004216	ENSG00000158796	DEDD	CASP8IP1|DEDD1|DEDPro1|DEFT|FLDED-1|FLDED1|KE05	death effector domain containing	protein-coding
29448	chr10	70407521	70408500	+	0	NA	intron (NM_004096, intron 1 of 2)	SVA_D|Retroposon|SVA	3865	NM_004096	1979		NM_004096	ENSG00000148730	EIF4EBP2	4EBP2|PHASII	eukaryotic translation initiation factor 4E binding protein 2	protein-coding
234114	chrX	9530321	9531190	+	0	NA	intron (NM_001139467, intron 2 of 16)	intron (NM_001139467, intron 2 of 16)	65697	NM_005647	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
182958	chr5	71288251	71288750	+	0	NA	intron (NR_146391, intron 1 of 9)	L1PA16|LINE|L1	1339	NR_146391	653080		NR_146391		GUSBP16	-	GUSB pseudogene 16	pseudo
228443	chr9	99833271	99833430	+	0	NA	exon (NM_006981, exon 5 of 8)	exon (NM_006981, exon 5 of 8)	11465	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
105976	chr18	5456621	5457450	+	0	NA	intron (NM_001384691, intron 3 of 20)	intron (NM_001384691, intron 3 of 20)	64344	NM_001384684	23136		NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1 like 3	protein-coding
219743	chr8	81073001	81073480	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	38828	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
216540	chr8	21509271	21509430	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	211111	NR_104677	101929172		NR_104677	ENSG00000254334	LINC03093	-	long intergenic non-protein coding RNA 3093	ncRNA
106041	chr18	8742321	8742950	+	0	NA	intron (NM_015210, intron 4 of 16)	THE1C|LTR|ERVL-MaLR	25254	NM_015210	23255		NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding
129191	chr2	68191251	68191750	+	0	NA	intron (NM_000945, intron 2 of 5)	Tigger3c|DNA|TcMar-Tigger	33612	NM_020143	56902		NM_020143	ENSG00000115946	PNO1	KHRBP1|RRP20	partner of NOB1 homolog	protein-coding
93318	chr17	18179971	18180530	+	0	NA	TTS (NM_016239)	TTS (NM_016239)	-3578	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
60031	chr13	32595771	32596500	+	0	NA	intron (NM_015032, intron 1 of 34)	L1ME2|LINE|L1	9683	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
121652	chr19	47486671	47488250	+	0	NA	TTS (NM_003827)	TTS (NM_003827)	3178	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
177198	chr4	108307821	108308080	+	0	NA	Intergenic	LTR8|LTR|ERV1	135830	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
224717	chr9	21504971	21505330	+	0	NA	intron (NR_152877, intron 1 of 3)	L2c|LINE|L2	7035	NR_029505	407035		NR_029505	ENSG00000199177	MIR31	MIRN31|hsa-mir-31|miR-31	microRNA 31	ncRNA
128203	chr2	53967121	53967700	+	0	NA	intron (NM_014614, intron 1 of 46)	AluSx|SINE|Alu	3583	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
83535	chr16	27551721	27552330	+	0	NA	intron (NM_015202, intron 1 of 27)	FLAM_C|SINE|Alu	1881	NM_015202	23247		NM_015202	ENSG00000047578	KATNIP	JBTS26|KIAA0556	katanin interacting protein	protein-coding
211778	chr7	107562401	107562600	+	0	NA	intron (NM_001379511, intron 1 of 20)	L2c|LINE|L2	1420	NM_001379516	10466		NM_006348	ENSG00000164597	COG5	CDG2I|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding
66333	chr14	61432751	61433580	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	111722	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
33647	chr10	119704201	119704830	+	0	NA	Intergenic	Intergenic	-21532	NM_001243195	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
125288	chr2	10500151	10500450	+	0	NA	Intergenic	Intergenic	50572	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
14121	chr1	120940451	120940550	+	0	NA	intron (NR_109754, intron 1 of 2)	AluSx|SINE|Alu	-2100	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
103165	chr17	77429201	77429400	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-21449	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
56670	chr12	119996251	119997250	+	0	NA	intron (NR_147894, intron 1 of 8)	MER5B|DNA|hAT-Charlie	6906	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
230935	chr9	129406321	129406630	+	0	NA	Intergenic	L2b|LINE|L2	69552	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
121902	chr19	48393321	48394500	+	0	NA	intron (NM_000836, intron 1 of 13)	intron (NM_000836, intron 1 of 13)	242	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
167260	chr3	128597001	128598000	+	0	NA	Intergenic	MIRb|SINE|MIR	-21414	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
188179	chr5	150485501	150486980	+	0	NA	promoter-TSS (NR_105061)	promoter-TSS (NR_105061)	-248	NR_105061	102546298		NR_105061	ENSG00000254333	NDST1-AS1	-	NDST1 antisense RNA 1	ncRNA
7697	chr1	35941621	35941880	+	0	NA	intron (NM_177422, intron 1 of 16)	AluJb|SINE|Alu	10645	NM_177422	192669		NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
38455	chr11	45376651	45376950	+	0	NA	intron (NR_122071, intron 1 of 4)	intron (NR_122071, intron 1 of 4)	5403	NR_122071	399886		NR_122071	ENSG00000255267	LINC02687	-	long intergenic non-protein coding RNA 2687	ncRNA
93582	chr17	19113901	19114330	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1479	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
14828	chr1	146309021	146309930	+	0	NA	Intergenic	Intergenic	11484	NM_001355407	440672		NM_001355407	ENSG00000177144	NUDT4B	DIPP-2B|NUDT4P1	nudix hydrolase 4B	protein-coding
166975	chr3	125593801	125594000	+	0	NA	intron (NM_022776, intron 1 of 12)	intron (NM_022776, intron 1 of 12)	1597	NM_022776	114885		NM_022776	ENSG00000144909	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein like 11	protein-coding
65566	chr14	51954571	51954730	+	0	NA	intron (NM_053064, intron 3 of 3)	MLT1O|LTR|ERVL-MaLR	-34896	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
82059	chr16	13866251	13866450	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-53804	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
80691	chr16	3051001	3051600	+	0	NA	TTS (NR_123723)	TTS (NR_123723)	4739	NM_022468	64386		NM_004142	ENSG00000008516	MMP25	MMP-25|MMP20|MMP20A|MMPL1|MT-MMP 6|MT-MMP6|MT6-MMP|MT6MMP|MTMMP6	matrix metallopeptidase 25	protein-coding
38937	chr11	47508071	47508230	+	0	NA	intron (NM_001376409, intron 1 of 15)	intron (NM_001376409, intron 1 of 15)	-13629	NM_198700	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
187721	chr5	143401671	143404800	+	0	NA	promoter-TSS (NM_001364182)	promoter-TSS (NM_001364182)	48	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
180349	chr5	6720751	6721100	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	7493	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
64931	chr14	35801251	35801550	+	0	NA	intron (NM_014990, intron 1 of 40)	AluSz|SINE|Alu	7895	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
79843	chr16	1446721	1448000	+	0	NA	intron (NM_001114331, intron 22 of 23)	(CCCATG)n|Simple_repeat|Simple_repeat	-2871	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
224560	chr9	19441351	19442300	+	0	NA	intron (NM_001010887, intron 4 of 5)	intron (NM_001010887, intron 4 of 5)	32816	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
154725	chr22	36454641	36456450	+	0	NA	Intergenic	Intergenic	26095	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
15800	chr1	151284351	151285730	+	0	NA	intron (NM_020832, intron 1 of 8)	AluJb|SINE|Alu	2741	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
202278	chr6	157075621	157076080	+	0	NA	intron (NM_001363725, intron 2 of 17)	L1MD3|LINE|L1	39423	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
75612	chr15	67123951	67124400	+	0	NA	intron (NM_005902, intron 1 of 8)	AluJr|SINE|Alu	-1541	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
10246	chr1	63615421	63616080	+	0	NA	intron (NM_001172819, intron 1 of 10)	AluSx1|SINE|Alu	-7466	NM_001172818	5236		NM_002633	ENSG00000079739	PGM1	CDG1T|GSD14	phosphoglucomutase 1	protein-coding
232751	chr9	136661171	136661650	+	0	NA	promoter-TSS (NR_135132)	promoter-TSS (NR_135132)	-989	NR_135132	101928612		NR_135132	ENSG00000228401	HSPC324	-	uncharacterized LOC101928612	ncRNA
219644	chr8	80297071	80297950	+	0	NA	Intergenic	Intergenic	56121	NR_049894	100847056		NR_049894	ENSG00000265588	MIR5708	-	microRNA 5708	ncRNA
147377	chr20	58515051	58515150	+	0	NA	promoter-TSS (NR_034147)	promoter-TSS (NR_034147)	-279	NR_034147	149773		NR_034147	ENSG00000231290	APCDD1L-DT	APCDD1L-AS1	APCDD1L divergent transcript	ncRNA
165118	chr3	71681321	71681580	+	0	NA	3' UTR (NM_001134651, exon 7 of 7)	3' UTR (NM_001134651, exon 7 of 7)	43952	NM_001134651	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
48218	chr12	8179071	8179230	+	0	NA	3' UTR (NM_001004328, exon 5 of 5)	3' UTR (NM_001004328, exon 5 of 5)	-1059	NR_026788	440078		NR_026788	ENSG00000226711	FAM66C	-	family with sequence similarity 66 member C	ncRNA
153394	chr22	24635021	24635480	+	0	NA	intron (NR_024494, intron 1 of 6)	intron (NR_024494, intron 1 of 6)	2335	NR_024494	644165		NR_024494		BCRP3	BCR3|BCRL3|BCRL6	BCR pseudogene 3	pseudo
113314	chr19	8579721	8579980	+	0	NA	TTS (NM_001282352)	TTS (NM_001282352)	-2408	NM_012335	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
224689	chr9	21330321	21330880	+	0	NA	3' UTR (NM_018847, exon 1 of 1)	3' UTR (NM_018847, exon 1 of 1)	4804	NM_018847	55958		NM_018847	ENSG00000198642	KLHL9	-	kelch like family member 9	protein-coding
184847	chr5	111550421	111551100	+	0	NA	intron (NR_040093, intron 1 of 6)	intron (NR_040093, intron 1 of 6)	-38163	NM_001308057	134429		NM_139164	ENSG00000164211	STARD4	-	StAR related lipid transfer domain containing 4	protein-coding
15461	chr1	150347821	150348080	+	0	NA	intron (NR_146768, intron 14 of 15)	MER47A|DNA|TcMar-Tigger	-16161	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
196822	chr6	46221221	46221480	+	0	NA	3' UTR (NM_001251973, exon 5 of 5)	3' UTR (NM_001251973, exon 5 of 5)	-50340	NM_001290073	59084		NM_021572	ENSG00000112796	ENPP5	NPP-5|NPP5	ectonucleotide pyrophosphatase/phosphodiesterase family member 5	protein-coding
11469	chr1	89994451	89996180	+	0	NA	promoter-TSS (NR_002830)	promoter-TSS (NR_002830)	205	NM_001320185	284695		NM_181781	ENSG00000162664	ZNF326	ZAN75|ZIRD|Zfp326|dJ871E2.1	zinc finger protein 326	protein-coding
51074	chr12	49942871	49943700	+	0	NA	Intergenic	Intergenic	-7452	NM_000486	359		NM_000486	ENSG00000167580	AQP2	AQP-CD|NDI2|WCH-CD	aquaporin 2	protein-coding
161103	chr3	38168971	38169900	+	0	NA	intron (NM_005109, intron 1 of 17)	AluSx1|SINE|Alu	3898	NM_005109	9943		NM_005109	ENSG00000172939	OXSR1	OSR1	oxidative stress responsive kinase 1	protein-coding
94877	chr17	31528621	31529080	+	0	NA	intron (NM_001346748, intron 11 of 12)	intron (NM_001346748, intron 11 of 12)	-6033	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
32688	chr10	103968671	103968830	+	0	NA	intron (NM_014720, intron 1 of 18)	MIRc|SINE|MIR	1610	NM_014720	9748		NM_014720	ENSG00000065613	SLK	LOSK|STK2|bA16H23.1|se20-9	STE20 like kinase	protein-coding
235968	chrX	53678701	53678950	+	0	NA	intron (NM_031407, intron 3 of 83)	intron (NM_031407, intron 3 of 83)	7894	NM_031407	10075		NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein-coding
23586	chr1	229623671	229624050	+	0	NA	intron (NM_014409, intron 1 of 4)	MIRb|SINE|MIR	2187	NM_014409	27097		NM_014409	ENSG00000135801	TAF5L	PAF65B	TATA-box binding protein associated factor 5 like	protein-coding
221009	chr8	116120401	116121000	+	0	NA	intron (NR_046215, intron 6 of 13)	intron (NR_046215, intron 6 of 13)	204359	NR_046215	100859921		NR_046215	ENSG00000249917	LINC00536	-	long intergenic non-protein coding RNA 536	ncRNA
27784	chr10	35447321	35448580	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	111076	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
229941	chr9	126652251	126652950	+	0	NA	intron (NM_001174147, intron 2 of 7)	(TG)n|Simple_repeat|Simple_repeat	38672	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
19872	chr1	183498271	183498760	+	0	NA	intron (NM_001174061, intron 1 of 21)	AluJb|SINE|Alu	26016	NM_001375585	9887		NM_014837	ENSG00000116698	SMG7	C1orf16|EST1C|SGA56M	SMG7 nonsense mediated mRNA decay factor	protein-coding
194005	chr6	31792601	31792800	+	0	NA	intron (NM_006295, intron 4 of 29).4	intron (NM_006295, intron 4 of 29).4	3052	NM_006295	7407		NM_006295	ENSG00000204394	VARS1	G7A|NDMSCA|VARS|VARS2	valyl-tRNA synthetase 1	protein-coding
182870	chr5	69846351	69846450	+	0	NA	intron (NR_029426, intron 1 of 9).2	L1PA10|LINE|L1	1588	NR_029426	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
195403	chr6	36781051	36781350	+	0	NA	intron (NM_001376889, intron 9 of 21)	intron (NM_001376889, intron 9 of 21)	-15405	NM_001376890	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
24138	chr1	235839271	235839630	+	0	NA	intron (NM_001301365, intron 1 of 52)	AluSx|SINE|Alu	13610	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
225318	chr9	34602901	34603100	+	0	NA	Intergenic	L2c|LINE|L2	9097	NM_148178	138716		NM_148178	ENSG00000164967	RPP25L	C9orf23|bA296L22.5	ribonuclease P/MRP subunit p25 like	protein-coding
87248	chr16	69764071	69764830	+	0	NA	intron (NM_001270455, intron 1 of 8)	AluJb|SINE|Alu	2118	NM_001270454	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
28201	chr10	44961101	44961500	+	0	NA	intron (NM_032023, intron 1 of 10)	intron (NM_032023, intron 1 of 10)	1498	NM_032023	83937		NM_032023	ENSG00000107551	RASSF4	AD037	Ras association domain family member 4	protein-coding
198488	chr6	106322821	106323880	+	0	NA	intron (NM_004849, intron 1 of 7)	AluJr4|SINE|Alu	2085	NM_001286106	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
182345	chr5	59174001	59174580	+	0	NA	intron (NM_001364600, intron 7 of 7)	intron (NM_001364600, intron 7 of 7)	101825	NM_001197220	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
52382	chr12	55718251	55718680	+	0	NA	intron (NM_001487, intron 2 of 3)	intron (NM_001487, intron 2 of 3)	-1928	NM_002905	5959		NM_002905	ENSG00000135437	RDH5	9cRDH|HSD17B9|RDH1|SDR9C5	retinol dehydrogenase 5	protein-coding
191685	chr6	13526751	13527250	+	0	NA	Intergenic	LTR33|LTR|ERVL	-39363	NM_001242629	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
126890	chr2	32337101	32337330	+	0	NA	Intergenic	MER96B|DNA|hAT-Tip100	-19813	NM_016252	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
113087	chr19	8266871	8267250	+	0	NA	Intergenic	AluSx3|SINE|Alu	41298	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
180043	chr5	1070101	1070880	+	0	NA	intron (NM_006598, intron 17 of 23).2	intron (NM_006598, intron 17 of 23).2	-7516	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
147520	chr20	59221051	59221430	+	0	NA	intron (NM_178457, intron 4 of 5)	intron (NM_178457, intron 4 of 5)	57419	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
227495	chr9	91193601	91194600	+	0	NA	Intergenic	CpG	75038	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
57729	chr12	122887271	122887800	+	0	NA	intron (NM_024667, intron 1 of 3)	L2b|LINE|L2	8589	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
221303	chr8	123025471	123025630	+	0	NA	intron (NM_001330601, intron 1 of 6)	L2b|LINE|L2	222	NM_001363963	79139		NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
191418	chr6	10403871	10404780	+	0	NA	promoter-TSS (NR_145448)	promoter-TSS (NR_145448)	-177	NR_145448	109729173		NR_145448	ENSG00000285278	TFAP2A-AS2	HIPSTR	TFAP2A antisense RNA 2	ncRNA
198615	chr6	107733271	107733980	+	0	NA	intron (NM_001286408, intron 4 of 6)	intron (NM_001286408, intron 4 of 6)	-1475	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
66654	chr14	63878151	63878350	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	25246	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
20510	chr1	198666371	198666930	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	27610	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
157521	chr22	45344301	45344500	+	0	NA	3' UTR (NM_001291501, exon 23 of 23)	3' UTR (NM_001291501, exon 23 of 23)	25957	NM_001349913	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
24831	chr10	342901	343100	+	0	NA	intron (NM_014974, intron 28 of 36)	intron (NM_014974, intron 28 of 36)	163006	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
103504	chr17	78414471	78415350	+	0	NA	non-coding (NR_111989, exon 7 of 9)	non-coding (NR_111989, exon 7 of 9)	36261	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
223050	chr8	143375301	143376200	+	0	NA	intron (NM_052924, intron 2 of 14)	intron (NM_052924, intron 2 of 14)	6874	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
148045	chr20	63223171	63224230	+	0	NA	Intergenic	Intergenic	-7569	NM_017798	54915		NM_017798	ENSG00000149658	YTHDF1	C20orf21|DF1	YTH N6-methyladenosine RNA binding protein F1	protein-coding
176401	chr4	88826521	88826980	+	0	NA	intron (NM_014883, intron 7 of 23)	L2c|LINE|L2	-3389	NM_001015045	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
133661	chr2	127057821	127058080	+	0	NA	intron (NM_139346, intron 11 of 15)	intron (NM_139346, intron 11 of 15)	24115	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
132032	chr2	100941771	100941930	+	0	NA	intron (NM_002518, intron 5 of 20)	intron (NM_002518, intron 5 of 20)	35311	NR_110213	101927142		NR_110213		NPAS2-AS1	-	NPAS2 antisense RNA 1	ncRNA
53707	chr12	68579051	68579750	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-31499	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
213330	chr7	135238251	135238350	+	0	NA	intron (NM_182489, intron 1 of 8)	intron (NM_182489, intron 1 of 8)	6321	NM_182489	346673		NM_182489	ENSG00000146857	STRA8	-	stimulated by retinoic acid 8	protein-coding
235996	chrX	54408871	54409550	+	0	NA	Intergenic	L1MB5|LINE|L1	-31165	NM_001346790	90121		NM_058163	ENSG00000158526	TSR2	DBA14|DT1P1A10|WGG1	TSR2 ribosome maturation factor	protein-coding
52518	chr12	56081301	56081500	+	0	NA	intron (NM_001005915, intron 1 of 2)	intron (NM_001005915, intron 1 of 2)	1235	NM_001982	2065		NM_001982	ENSG00000065361	ERBB3	ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|VSCN1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3	erb-b2 receptor tyrosine kinase 3	protein-coding
74791	chr15	63280771	63281450	+	0	NA	intron (NM_001145646, intron 2 of 4)	AluJb|SINE|Alu	3505	NM_031301	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
43976	chr11	94037101	94037330	+	0	NA	intron (NM_001098672, intron 1 of 19)	L1PA2|LINE|L1	15861	NM_001098672	341208		NM_001098672	ENSG00000181333	HEPHL1	HJDD|ZP	hephaestin like 1	protein-coding
184525	chr5	102154871	102155630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	141034	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
70082	chr14	100161071	100161430	+	0	NA	Intergenic	Intergenic	-1605	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
236221	chrX	65704751	65704850	+	0	NA	intron (NM_002444, intron 1 of 12)	AluSx3|SINE|Alu	37146	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
117427	chr19	19641521	19641930	+	0	NA	intron (NM_001288998, intron 4 of 19)	L2a|LINE|L2	1932	NM_001288998	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
135146	chr2	157463751	157464800	+	0	NA	Intergenic	Intergenic	-20186	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
177166	chr4	108147451	108147750	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	19197	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
133805	chr2	127807351	127807650	+	0	NA	intron (NM_001006623, intron 1 of 7)	intron (NM_001006623, intron 1 of 7)	3671	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
29555	chr10	71378321	71378580	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-18470	NM_022124	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
35323	chr11	1036101	1036830	+	0	NA	intron (NM_005961, intron 1 of 32)	CpG	253	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
38306	chr11	43682151	43682750	+	0	NA	intron (NM_016142, intron 1 of 10)	AluSg|SINE|Alu	1712	NM_016142	51144		NM_016142	ENSG00000149084	HSD17B12	KAR|SDR12C1	hydroxysteroid 17-beta dehydrogenase 12	protein-coding
193154	chr6	29643251	29643550	+	0	NA	Intergenic	Intergenic	-10217	NM_001470	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
174119	chr4	36215851	36216150	+	0	NA	intron (NR_146894, intron 2 of 32)	AluJb|SINE|Alu	27939	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
142173	chr20	2861871	2862230	+	0	NA	intron (NM_022575, intron 10 of 23)	intron (NM_022575, intron 10 of 23)	-2145	NM_002836	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
235640	chrX	48479971	48480330	+	0	NA	intron (NM_001282157, intron 2 of 8)	AluSq2|SINE|Alu	3951	NM_177439	24140		NM_012280	ENSG00000068438	FTSJ1	CDLIV|JM23|MRX44|MRX9|SPB1|TRMT7|XLID9	FtsJ RNA 2'-O-methyltransferase 1	protein-coding
61050	chr13	48245021	48245430	+	0	NA	intron (NM_021999, intron 1 of 5)	AluSz|SINE|Alu	12019	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
139058	chr2	218802551	218803000	+	0	NA	intron (NM_000784, intron 1 of 8)	L1M4|LINE|L1	-20315	NR_128707	103504730		NR_128707	ENSG00000283639	MIR9500	hsa-mir-9500	microRNA 9500	ncRNA
216273	chr8	12496771	12496930	+	0	NA	intron (NR_040092, intron 4 of 5)	LTR7|LTR|ERV1	59837	NR_040091	100506990		NR_040091		FAM86B2-DT	-	FAM86B2 divergent transcript	ncRNA
72523	chr15	34223471	34223630	+	0	NA	Intergenic	AluSp|SINE|Alu	-1466	NR_147140	51234		NM_016454	ENSG00000128463	EMC4	PIG17|TMEM85	ER membrane protein complex subunit 4	protein-coding
35475	chr11	1487001	1487380	+	0	NA	promoter-TSS (NM_001172223)	promoter-TSS (NM_001172223)	-411	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
102937	chr17	76643451	76643950	+	0	NA	promoter-TSS (NM_001289107)	promoter-TSS (NM_001289107)	57	NM_018414	55808		NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding
232939	chr9	136922801	136923200	+	0	NA	intron (NM_021138, intron 9 of 10)	intron (NM_021138, intron 9 of 10)	21738	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
56521	chr12	116599621	116600000	+	0	NA	Intergenic	Intergenic	40429	NM_001085481	643246		NM_001085481	ENSG00000258102	MAP1LC3B2	ATG8G	microtubule associated protein 1 light chain 3 beta 2	protein-coding
213284	chr7	134864771	134865530	+	0	NA	intron (NM_033138, intron 2 of 14)	intron (NM_033138, intron 2 of 14)	-26250	NM_033139	800		NM_004342	ENSG00000122786	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22|h-CD	caldesmon 1	protein-coding
158226	chr22	50275751	50276800	+	0	NA	intron (NM_001376885, intron 35 of 36)	intron (NM_001376885, intron 35 of 36)	-5895	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
207132	chr7	42930301	42930650	+	0	NA	intron (NM_002787, intron 1 of 7)	AluJo|SINE|Alu	1699	NM_002787	5683		NM_002787	ENSG00000106588	PSMA2	HC3|MU|PMSA2|PSC2	proteasome 20S subunit alpha 2	protein-coding
119629	chr19	40792271	40793130	+	0	NA	intron (NR_037791, intron 7 of 11)	L1MB5|LINE|L1	-6491	NM_080732	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
74982	chr15	63894171	63894600	+	0	NA	Intergenic	Intergenic	-23366	NR_029944	494334		NR_029944	ENSG00000199156	MIR422A	MIRN422A	microRNA 422a	ncRNA
159936	chr3	17074451	17074880	+	0	NA	intron (NM_015184, intron 5 of 5)	Tigger1|DNA|TcMar-Tigger	141469	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
174060	chr4	26904971	26905530	+	0	NA	intron (NM_020860, intron 1 of 11)	L2c|LINE|L2	44409	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
9771	chr1	53414801	53415200	+	0	NA	Intergenic	Intergenic	25020	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
79419	chr16	689751	691000	+	0	NA	promoter-TSS (NM_032259)	promoter-TSS (NM_032259)	23	NM_032259	84219		NM_032259	ENSG00000127580	WDR24	C16orf21|JFP7	WD repeat domain 24	protein-coding
162030	chr3	46682471	46682660	+	0	NA	intron (NM_147129, intron 10 of 25)	MIR3|SINE|MIR	11114	NM_147129	259173		NM_147129	ENSG00000178038	ALS2CL	RN49018	ALS2 C-terminal like	protein-coding
236843	chrX	79262371	79262900	+	0	NA	Intergenic	Intergenic	104699	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
125794	chr2	23929021	23929500	+	0	NA	Intergenic	AluJb|SINE|Alu	-2137	NM_001354107	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
196795	chr6	45737621	45737880	+	0	NA	Intergenic	Intergenic	199847	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
68986	chr14	91477871	91478230	+	0	NA	intron (NM_001284281, intron 2 of 12)	intron (NM_001284281, intron 2 of 12)	32260	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
87951	chr16	79597771	79599220	+	0	NA	3' UTR (NM_001031804, exon 1 of 1)	3' UTR (NM_001031804, exon 1 of 1)	2242	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
145332	chr20	41116101	41116680	+	0	NA	exon (NM_003286, exon 17 of 21)	exon (NM_003286, exon 17 of 21)	-21153	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
39229	chr11	57649451	57650930	+	0	NA	promoter-TSS (NM_145008)	promoter-TSS (NM_145008)	-246	NM_001363487	219539		NM_145008	ENSG00000166793	YPEL4	-	yippee like 4	protein-coding
170111	chr3	183172301	183172700	+	0	NA	Intergenic	Intergenic	-9766	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
104458	chr17	81103871	81104480	+	0	NA	intron (NM_001385159, intron 4 of 8)	intron (NM_001385159, intron 4 of 8)	6564	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
171509	chr3	196635751	196635850	+	0	NA	Intergenic	Intergenic	-3213	NR_132101	101929769		NR_132101		LINC01063	-	long intergenic non-protein coding RNA 1063	ncRNA
213766	chr7	140646351	140647390	+	0	NA	Intergenic	Intergenic	-5410	NM_001318053	27147		NM_015689	ENSG00000146966	DENND2A	FAM31D|KIAA1277	DENN domain containing 2A	protein-coding
154892	chr22	37158651	37159430	+	0	NA	intron (NM_001346222, intron 1 of 9)	LTR84b|LTR|ERVL	-9124	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
114812	chr19	13806001	13806200	+	0	NA	intron (NM_023072, intron 3 of 12)	AluSx|SINE|Alu	10657	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
208470	chr7	66992851	66993230	+	0	NA	intron (NM_016038, intron 3 of 4)	AluJr|SINE|Alu	2546	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
180376	chr5	7851901	7852630	+	0	NA	Intergenic	Intergenic	-1132	NM_001089584	134121		NM_001089584	ENSG00000215217	CFAP90	C5orf49	cilia and flagella associated protein 90	protein-coding
78977	chr15	101643221	101644080	+	0	NA	intron (NM_025141, intron 4 of 4)	intron (NM_025141, intron 4 of 4)	8731	NM_078474	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
142720	chr20	8759601	8759830	+	0	NA	intron (NM_015192, intron 24 of 31)	AluSp|SINE|Alu	-71470	NR_004386	26767		NR_004386	ENSG00000201348	RNU105B	105B|E1-2	RNA, U105B small nucleolar	snoRNA
14730	chr1	145982671	145982830	+	0	NA	Intergenic	Intergenic	12994	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
158077	chr22	49967421	49967880	+	0	NA	Intergenic	Intergenic	4784	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
3693	chr1	16527601	16527930	+	0	NA	Intergenic	MIR3|SINE|MIR	7887	NR_135764	100132147		NR_135764	ENSG00000233421	LINC01783	-	long intergenic non-protein coding RNA 1783	ncRNA
188146	chr5	150408271	150408950	+	0	NA	intron (NM_001025158, intron 1 of 5)	intron (NM_001025158, intron 1 of 5)	4146	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
223444	chr8	143972971	143974090	+	0	NA	promoter-TSS (NM_201378)	promoter-TSS (NM_201378)	-1	NM_201378	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
125693	chr2	20342901	20343530	+	0	NA	intron (NM_001352925, intron 1 of 19)	intron (NM_001352925, intron 1 of 19)	7629	NM_001352927	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
45718	chr11	119091251	119091730	+	0	NA	exon (NM_001024382, exon 9 of 14)	exon (NM_001024382, exon 9 of 14)	3503	NM_001024382	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
127383	chr2	39780651	39781200	+	0	NA	Intergenic	L2c|LINE|L2	-1649	NM_001321477	80745		NM_025264	ENSG00000138050	THUMPD2	C2orf8	THUMP domain containing 2	protein-coding
131356	chr2	96173101	96173300	+	0	NA	Intergenic	AluSz6|SINE|Alu	-27760	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
66215	chr14	61317621	61317880	+	0	NA	Intergenic	L2b|LINE|L2	-3693	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
233235	chr9	137249871	137251100	+	0	NA	promoter-TSS (NM_001256700)	promoter-TSS (NM_001256700)	-776	NM_001004353	441476		NM_001004353	ENSG00000197768	STPG3	C9orf173	sperm-tail PG-rich repeat containing 3	protein-coding
12012	chr1	96140271	96140430	+	0	NA	Intergenic	LTR12_|LTR|ERV1	148282	NR_125991	102723661		NR_125991	ENSG00000237435	LINC02790	-	long intergenic non-protein coding RNA 2790	ncRNA
86623	chr16	67399271	67399980	+	0	NA	intron (NM_013304, intron 4 of 10)	CpG-9834	-6127	NM_016140	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
234755	chrX	23694501	23694800	+	0	NA	Intergenic	Intergenic	27157	NM_006406	10549		NM_006406	ENSG00000123131	PRDX4	AOE37-2|AOE372|HEL-S-97n|PRX-4	peroxiredoxin 4	protein-coding
2582	chr1	9823411	9824850	+	0	NA	promoter-TSS (NM_001009566)	promoter-TSS (NM_001009566)	-165	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
218859	chr8	60410501	60410700	+	0	NA	intron (NR_103854, intron 1 of 2)	AluJb|SINE|Alu	3218	NR_103854	100505532		NR_103854		LINC01301	-	long intergenic non-protein coding RNA 1301	ncRNA
152721	chr22	21657371	21658700	+	0	NA	non-coding (NR_169729, exon 5 of 7)	non-coding (NR_169729, exon 5 of 7)	275	NR_169733	107985532		NR_169729		LOC107985532	-	uncharacterized LOC107985532	pseudo
237551	chrX	120571201	120571400	+	0	NA	intron (NM_003588, intron 2 of 21)	intron (NM_003588, intron 2 of 21)	4529	NM_003588	8450		NM_003588	ENSG00000158290	CUL4B	CUL-4B|MRXHF2|MRXS15|MRXSC|SFM2	cullin 4B	protein-coding
175242	chr4	57110301	57110500	+	0	NA	promoter-TSS (NM_001253835)	promoter-TSS (NM_001253835)	-15	NM_001253835	3490		NM_001553	ENSG00000163453	IGFBP7	AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF	insulin like growth factor binding protein 7	protein-coding
35093	chr11	631601	631800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4519	NM_021920	6343		NM_021920	ENSG00000070031	SCT	-	secretin	protein-coding
137262	chr2	193502321	193502780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	752705	NR_152587	64002		NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1 prostate-specific transcript	ncRNA
110528	chr19	2077801	2078480	+	0	NA	exon (NM_130807, exon 3 of 5)	exon (NM_130807, exon 3 of 5)	18186	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
147871	chr20	62824351	62825480	+	0	NA	intron (NM_001853, intron 11 of 31)	intron (NM_001853, intron 11 of 31)	7865	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
89608	chr16	89297651	89298500	+	0	NA	intron (NR_136339, intron 2 of 2)	intron (NR_136339, intron 2 of 2)	1947	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
182521	chr5	65481551	65482350	+	0	NA	promoter-TSS (NR_135689)	promoter-TSS (NR_135689)	-30	NM_197941	11174		NM_014273	ENSG00000049192	ADAMTS6	ADAM-TS 6|ADAM-TS6|ADAMTS-6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein-coding
56409	chr12	113286971	113287130	+	0	NA	exon (NM_001351346, exon 20 of 29)	exon (NM_001351346, exon 20 of 29)	-4473	NR_106820	102465457		NR_106820	ENSG00000274822	MIR6762	hsa-mir-6762	microRNA 6762	ncRNA
164513	chr3	63228751	63228850	+	0	NA	Intergenic	Intergenic	-49508	NM_001130003	132204		NM_144642	ENSG00000163630	SYNPR	SPO	synaptoporin	protein-coding
88835	chr16	87489821	87491180	+	0	NA	intron (NM_015144, intron 1 of 12)	intron (NM_015144, intron 1 of 12)	2524	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
151374	chr21	45888421	45888780	+	0	NA	intron (NM_001382276, intron 6 of 18)	intron (NM_001382276, intron 6 of 18)	40450	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
220681	chr8	101204121	101207450	+	0	NA	promoter-TSS (NM_001267708)	promoter-TSS (NM_001267708)	-53	NM_001267708	51123		NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding
6592	chr1	28764371	28764730	+	0	NA	intron (NM_016258, intron 4 of 4)	AluSg7|SINE|Alu	27610	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
75435	chr15	65796801	65797000	+	0	NA	Intergenic	Intergenic	-4607	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
184341	chr5	96956221	96956500	+	0	NA	intron (NM_005575, intron 1 of 17)	AluSx3|SINE|Alu	-2073	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
50593	chr12	48645401	48645600	+	0	NA	Intergenic	HAL1M8|LINE|L1	9018	NR_002968	677815		NR_002968	ENSG00000221491	SNORA2C	ACA34|MIR1291|SNORA34	small nucleolar RNA, H/ACA box 2C	snoRNA
115448	chr19	15330071	15330350	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	2329	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
192001	chr6	16321471	16321630	+	0	NA	intron (NM_000332, intron 8 of 8)	intron (NM_000332, intron 8 of 8)	82963	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
157870	chr22	49656901	49658430	+	0	NA	promoter-TSS (NR_110523)	promoter-TSS (NR_110523)	-146	NR_110522	348645		NM_198851	ENSG00000188511	MIR3667HG	C22orf34	MIR3667 host gene	ncRNA
83114	chr16	22502401	22503000	+	0	NA	Intergenic	AluJb|SINE|Alu	-1749	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
26032	chr10	12353301	12354080	+	0	NA	intron (NM_153498, intron 1 of 10)	intron (NM_153498, intron 1 of 10)	4143	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
192334	chr6	23851251	23851350	+	0	NA	Intergenic	Intergenic	-274915	NM_080723	140767		NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
162217	chr3	47036771	47037130	+	0	NA	intron (NR_146158, intron 19 of 21)	intron (NR_146158, intron 19 of 21)	25408	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
127089	chr2	37590251	37590580	+	0	NA	Intergenic	Intergenic	81227	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
157345	chr22	44674421	44674880	+	0	NA	intron (NM_001017529, intron 1 of 7)	AluY|SINE|Alu	-2158	NM_001017530	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
84205	chr16	29872601	29872800	+	0	NA	intron (NM_001114099, intron 14 of 16)	intron (NM_001114099, intron 14 of 16)	8866	NR_015396	440356		NR_015396	ENSG00000293487	CDIPTOSP	CDIPT-AS1|lnc-CTHCC	CDIP transferase opposite strand, pseudogene	ncRNA
207964	chr7	55219601	55220180	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-30941	NR_047551	100507500		NR_047551	ENSG00000224057	EGFR-AS1	-	EGFR antisense RNA 1	ncRNA
25701	chr10	8962151	8962450	+	0	NA	Intergenic	Intergenic	64311	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
210984	chr7	101884951	101885330	+	0	NA	intron (NM_181552, intron 1 of 23)	intron (NM_181552, intron 1 of 23)	67514	NM_181552	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
41686	chr11	66627571	66629380	+	0	NA	3' UTR (NM_006328, exon 3 of 3)	3' UTR (NM_006328, exon 3 of 3)	-10142	NM_001198843	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
135179	chr2	157899301	157900730	+	0	NA	Intergenic	AluSc|SINE|Alu	-23685	NM_001111067	90		NM_001105	ENSG00000115170	ACVR1	ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI	activin A receptor type 1	protein-coding
21709	chr1	206743521	206743780	+	0	NA	Intergenic	Intergenic	26953	NR_168467	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
228833	chr9	112112901	112113350	+	0	NA	intron (NM_022486, intron 6 of 16)	intron (NM_022486, intron 6 of 16)	62172	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
205177	chr7	7570671	7570900	+	0	NA	intron (NM_019005, intron 3 of 12)	MER1A|DNA|hAT-Charlie	2759	NM_001370078	54468		NM_019005	ENSG00000164654	MIOS	MIO|Sea4|Yulink	meiosis regulator for oocyte development	protein-coding
98882	chr17	48561751	48562350	+	0	NA	intron (NM_001384750, intron 1 of 3)	intron (NM_001384750, intron 1 of 3)	12398	NM_002146	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
92430	chr17	8438471	8439750	+	0	NA	intron (NM_001025579, intron 1 of 9)	AluY|SINE|Alu	3226	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
112656	chr19	6862451	6863200	+	0	NA	Intergenic	Intergenic	-24754	NM_001256252	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
1513	chr1	2859471	2859880	+	0	NA	Intergenic	Intergenic	-58807	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
49565	chr12	26931821	26932630	+	0	NA	intron (NM_018164, intron 3 of 16)	HAL1|LINE|L1	5756	NM_018164	55726		NM_018164	ENSG00000064102	INTS13	ASUN|C12orf11|GCT1|Mat89Bb|NET48|SPATA30	integrator complex subunit 13	protein-coding
212150	chr7	116638051	116638230	+	0	NA	intron (NR_165033, intron 2 of 4)	SVA_A|Retroposon|SVA	-23483	NR_120506	100996266		NR_120506		COMETT	COMET|LINC01510	cytosolic oncogenic antisense to MET transcript	ncRNA
230502	chr9	128255221	128256250	+	0	NA	TTS (NM_001005336)	TTS (NM_001005336)	-10705	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
75957	chr15	70474971	70475680	+	0	NA	Intergenic	Intergenic	30603	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
238256	chrX	148128851	148129100	+	0	NA	Intergenic	L1PA3|LINE|L1	147638	NM_152578	158521		NM_152578	ENSG00000176988	FMR1NB	CT37|NY-SAR-35|NYSAR35	FMR1 neighbor	protein-coding
121535	chr19	47236321	47236580	+	0	NA	Intergenic	Intergenic	-3783	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
146250	chr20	48904121	48904380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-17461	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
213798	chr7	140919051	140919350	+	0	NA	intron (NM_001374244, intron 1 of 18)	intron (NM_001374244, intron 1 of 18)	5068	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
156251	chr22	40404451	40405280	+	0	NA	intron (NM_001350047, intron 5 of 20)	intron (NM_001350047, intron 5 of 20)	34271	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
112906	chr19	7640321	7640850	+	0	NA	intron (NM_001127396, intron 4 of 18)	intron (NM_001127396, intron 4 of 18)	3475	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
78624	chr15	94236121	94237180	+	0	NA	intron (NR_169532, intron 1 of 23)	L2a|LINE|L2	5089	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
42484	chr11	69946471	69946630	+	0	NA	Intergenic	Intergenic	-39357	NM_001378092	55107		NM_018043	ENSG00000131620	ANO1	DOG1|INDMS|MYMY7|ORAOV2|TAOS2|TMEM16A	anoctamin 1	protein-coding
123429	chr19	54112751	54113450	+	0	NA	intron (NM_001321792, intron 2 of 5).5	AluSq2|SINE|Alu	1974	NM_001321792	29844		NM_013342	ENSG00000105619	TFPT	FB1|INO80F|amida	TCF3 fusion partner	protein-coding
227982	chr9	95349221	95349730	+	0	NA	Intergenic	CpG	-31766	NM_000136	2176		NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	FA complementation group C	protein-coding
97543	chr17	44067821	44068500	+	0	NA	promoter-TSS (NM_152344)	promoter-TSS (NM_152344)	-573	NM_152344	124801		NM_152344	ENSG00000161654	LSM12	PNAS-135	LSM12 homolog	protein-coding
49590	chr12	27142171	27142400	+	0	NA	Intergenic	Intergenic	-58158	NM_001384983	728858		NM_001080406	ENSG00000214700	C12orf71	-	chromosome 12 open reading frame 71	protein-coding
4053	chr1	19044071	19044430	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-87574	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
122187	chr19	48932121	48932430	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1424	NM_014475	27294		NM_014475	ENSG00000104808	DHDH	2DD|HUM2DD	dihydrodiol dehydrogenase	protein-coding
192280	chr6	20417801	20418150	+	0	NA	intron (NM_001243076, intron 1 of 6)	intron (NM_001243076, intron 1 of 6)	14296	NM_001243076	1871		NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding
28886	chr10	62804291	62806250	+	0	NA	exon (NM_032804, exon 1 of 1)	exon (NM_032804, exon 1 of 1)	550	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
227213	chr9	88451201	88451400	+	0	NA	intron (NM_006717, intron 3 of 5)	intron (NM_006717, intron 3 of 5)	62856	NM_006717	10927		NM_006717	ENSG00000106723	SPIN1	SPIN|TDRD24	spindlin 1	protein-coding
173550	chr4	10086051	10086800	+	0	NA	intron (NM_017491, intron 8 of 14)	intron (NM_017491, intron 8 of 14)	-7733	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
96036	chr17	39445901	39446100	+	0	NA	intron (NM_004774, intron 2 of 16)	AluSg|SINE|Alu	5263	NM_004774	5469		NM_004774	ENSG00000125686	MED1	CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2	mediator complex subunit 1	protein-coding
133811	chr2	127812371	127812730	+	0	NA	Intergenic	AluJo|SINE|Alu	-1363	NM_001006622	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
100989	chr17	64627921	64628180	+	0	NA	intron (NM_022739, intron 1 of 18)	intron (NM_022739, intron 1 of 18)	34257	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
230987	chr9	129490001	129492100	+	0	NA	intron (NR_038955, intron 1 of 4)	intron (NR_038955, intron 1 of 4)	2390	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
220064	chr8	93912351	93912450	+	0	NA	Intergenic	Intergenic	3719	NR_039602	100616169		NR_039602	ENSG00000284288	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
21651	chr1	206682251	206682550	+	0	NA	Intergenic	MIRc|SINE|MIR	-2505	NM_032960	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
25659	chr10	8348471	8349030	+	0	NA	Intergenic	Intergenic	-80445	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
117969	chr19	33303721	33303980	+	0	NA	non-coding (NR_026887, exon 1 of 1)	non-coding (NR_026887, exon 1 of 1)	1029	NR_026887	80054		NR_026887	ENSG00000267296	CEBPA-DT	ADINR|CEBPA-AS1	CEBPA divergent transcript	ncRNA
118056	chr19	34269651	34271100	+	0	NA	intron (NM_014686, intron 1 of 13)	intron (NM_014686, intron 1 of 13)	15821	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
206871	chr7	37636801	37637000	+	0	NA	Intergenic	L1PA11|LINE|L1	-46866	NM_001381946	353345		NM_181791	ENSG00000187037	GPR141	PGR13	G protein-coupled receptor 141	protein-coding
114916	chr19	13954121	13955080	+	0	NA	exon (NM_138353, exon 3 of 13)	exon (NM_138353, exon 3 of 13)	-1208	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
154996	chr22	37312701	37313000	+	0	NA	intron (NM_001318024, intron 12 of 12)	intron (NM_001318024, intron 12 of 12)	30342	NM_001318024	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
198865	chr6	109442721	109443230	+	0	NA	intron (NM_003080, intron 7 of 9)	intron (NM_003080, intron 7 of 9)	-1804	NM_001111298	285755		NM_173672	ENSG00000185250	PPIL6	PPIase|RSPH12|bA425D10.6|dJ919F19.1	peptidylprolyl isomerase like 6	protein-coding
958	chr1	1758871	1759230	+	0	NA	promoter-TSS (NM_001198995)	promoter-TSS (NM_001198995)	-408	NM_001198995	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
128336	chr2	54720351	54720850	+	0	NA	Intergenic	AluJb|SINE|Alu	-4412	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133536	chr2	120252121	120254050	+	0	NA	intron (NM_002881, intron 1 of 4)	CpG	233	NM_001369400	5899		NM_002881	ENSG00000144118	RALB	-	RAS like proto-oncogene B	protein-coding
184274	chr5	96746021	96746280	+	0	NA	intron (NR_104285, intron 1 of 17)	MIRc|SINE|MIR	2548	NR_104285	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
141240	chr2	239643921	239644830	+	0	NA	Intergenic	Intergenic	-118485	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
78125	chr15	90355821	90356280	+	0	NA	intron (NM_001004309, intron 2 of 3)	AluY|SINE|Alu	3766	NM_001004309	342132		NM_001004309	ENSG00000196391	ZNF774	-	zinc finger protein 774	protein-coding
151241	chr21	45286601	45287130	+	0	NA	intron (NM_133635, intron 1 of 8)	CpG	1030	NR_004858	23275		NM_015227	ENSG00000186866	POFUT2	C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
33852	chr10	124259251	124259350	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	159623	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
32332	chr10	102233851	102234400	+	0	NA	intron (NM_005029, intron 1 of 3)	intron (NM_005029, intron 1 of 3)	7387	NM_005029	5309		NM_005029	ENSG00000107859	PITX3	ASGD1|ASMD|ASOD|CTPP4|CTRCT11|PTX3	paired like homeodomain 3	protein-coding
193382	chr6	30348971	30349130	+	0	NA	Intergenic	Intergenic	3894	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
173778	chr4	17576351	17578000	+	0	NA	promoter-TSS (NM_015907)	promoter-TSS (NM_015907)	-23	NM_015907	51056		NM_015907	ENSG00000002549	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
42767	chr11	72743601	72744450	+	0	NA	intron (NM_001040118, intron 1 of 34)	L2c|LINE|L2	8364	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
92231	chr17	7905851	7905950	+	0	NA	promoter-TSS (NR_003000)	promoter-TSS (NR_003000)	-223	NR_003000	677763		NR_003000	ENSG00000252835	SCARNA21	ACA68|SCARNA21A	small Cajal body-specific RNA 21	ncRNA
26245	chr10	14605201	14606400	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-1399	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
227507	chr9	91332671	91332830	+	0	NA	intron (NM_001351432, intron 4 of 10)	MER72|LTR|ERV1	29168	NM_001698	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
75532	chr15	66638321	66638750	+	0	NA	intron (NR_110372, intron 1 of 4)	intron (NR_110372, intron 1 of 4)	56345	NR_110372	102723165		NR_110372	ENSG00000259471	LINC01169	-	long intergenic non-protein coding RNA 1169	ncRNA
6305	chr1	27628321	27628800	+	0	NA	intron (NM_005248, intron 1 of 12)	intron (NM_005248, intron 1 of 12)	-1963	NM_001042729	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
166318	chr3	112739371	112740080	+	0	NA	non-coding (NR_110017, exon 3 of 5)	non-coding (NR_110017, exon 3 of 5)	2636	NR_162092	113218483		NR_162092		MIR9900	-	microRNA 9900	ncRNA
146964	chr20	52425411	52426050	+	0	NA	Intergenic	Intergenic	-195108	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
198951	chr6	110816951	110817330	+	0	NA	intron (NM_001287215, intron 1 of 8)	intron (NM_001287215, intron 1 of 8)	-1285	NM_001300964	23097		NM_015076	ENSG00000155111	CDK19	CDC2L6|CDK11|DEE87|EIEE87|bA346C16.3	cyclin dependent kinase 19	protein-coding
149989	chr21	36927601	36927900	+	0	NA	intron (NR_148020, intron 5 of 10)	intron (NR_148020, intron 5 of 10)	34608	NM_001352518	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
194011	chr6	31797551	31798450	+	0	NA	exon (NM_021177, exon 4 of 5).3	exon (NM_021177, exon 4 of 5).3	-2248	NM_006295	7407		NM_006295	ENSG00000204394	VARS1	G7A|NDMSCA|VARS|VARS2	valyl-tRNA synthetase 1	protein-coding
144641	chr20	35966901	35967300	+	0	NA	Intergenic	LTR36|LTR|ERV1	-1490	NR_130714	140894		NM_080834	ENSG00000149646	CNBD2	C20orf152|CNMPD1	cyclic nucleotide binding domain containing 2	protein-coding
48851	chr12	12383271	12383630	+	0	NA	intron (NM_058169, intron 2 of 3)	L1ME1|LINE|L1	26372	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
1842	chr1	6264271	6264430	+	0	NA	TTS (NM_181865)	TTS (NM_181865)	-3252	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
200082	chr6	130159151	130159450	+	0	NA	intron (NM_001258275, intron 10 of 13)	THE1B|LTR|ERVL-MaLR	56585	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
49462	chr12	25069321	25069580	+	0	NA	intron (NR_159368, intron 6 of 20)	intron (NR_159368, intron 6 of 20)	16744	NM_006152	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
217062	chr8	23424871	23425030	+	0	NA	Intergenic	L1ME3G|LINE|L1	-20830	NM_002318	4017		NM_002318	ENSG00000134013	LOXL2	LOR|LOR2|WS9-14	lysyl oxidase like 2	protein-coding
84890	chr16	31196251	31197300	+	0	NA	Intergenic	AluSx3|SINE|Alu	-5110	NR_102400	100652740		NR_102400	ENSG00000261359	PYCARD-AS1	C16orf98|PYCARDOS	PYCARD antisense RNA 1	ncRNA
164207	chr3	56885051	56885300	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	31261	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
176688	chr4	100933451	100933750	+	0	NA	Intergenic	Intergenic	-258487	NR_046811	100874275		NR_046811	ENSG00000250223	LINC01216	EMCN-IT3	long intergenic non-protein coding RNA 1216	ncRNA
207250	chr7	43837871	43838030	+	0	NA	Intergenic	AluSx1|SINE|Alu	31567	NM_032014	64951		NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
13729	chr1	116805451	116805650	+	0	NA	Intergenic	L1MEd|LINE|L1	51120	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
120267	chr19	42606701	42606930	+	0	NA	intron (NR_073180, intron 2 of 2)	intron (NR_073180, intron 2 of 2)	-11891	NM_001816	1088		NM_001816	ENSG00000124469	CEACAM8	CD66b|CD67|CGM6|NCA-95	CEA cell adhesion molecule 8	protein-coding
48158	chr12	7931741	7932380	+	0	NA	intron (NM_006931, intron 3 of 9)	AluSc8|SINE|Alu	4127	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
87576	chr16	72664171	72665450	+	0	NA	intron (NR_159372, intron 1 of 7)	CpG	160	NR_126330	101927957		NR_126330	ENSG00000261008	LINC01572	-	long intergenic non-protein coding RNA 1572	ncRNA
83774	chr16	28737321	28738130	+	0	NA	Intergenic	SVA_B|Retroposon|SVA	13473	NR_107058	102465907		NR_107058	ENSG00000278340	MIR6862-2	hsa-mir-6862-2	microRNA 6862-2	ncRNA
190160	chr5	178129121	178129580	+	0	NA	Intergenic	AluSx|SINE|Alu	-1611	NM_001288795	64777		NM_022762	ENSG00000145916	RMND5B	GID2|GID2B	required for meiotic nuclear division 5 homolog B	protein-coding
198601	chr6	107718171	107718650	+	0	NA	intron (NM_001286409, intron 2 of 3)	THE1B|LTR|ERVL-MaLR	13740	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
77009	chr15	78482401	78482730	+	0	NA	intron (NM_001320942, intron 10 of 21)	LTR41|LTR|ERVL	-24999	NM_001083612	123688		NM_001013619	ENSG00000188266	HYKK	AGPHD1	hydroxylysine kinase	protein-coding
17707	chr1	158646321	158646580	+	0	NA	intron (NM_003126, intron 27 of 51)	intron (NM_003126, intron 27 of 51)	40011	NM_001004478	128368		NM_001004478	ENSG00000198967	OR10Z1	OR1-15	olfactory receptor family 10 subfamily Z member 1	protein-coding
63223	chr13	113865871	113866330	+	0	NA	non-coding (NR_044993, exon 2 of 2)	non-coding (NR_044993, exon 2 of 2)	1923	NR_044993	100506394		NR_044993	ENSG00000272695	GAS6-DT	GAS6-AS2	GAS6 divergent transcript	ncRNA
176415	chr4	89226921	89227300	+	0	NA	Intergenic	Intergenic	80690	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
84865	chr16	31172171	31172330	+	0	NA	Intergenic	LTR13|LTR|ERVK	-7860	NM_001170634	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
154640	chr22	36327201	36327400	+	0	NA	intron (NM_002473, intron 4 of 40)	intron (NM_002473, intron 4 of 40)	-40393	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
83615	chr16	28204471	28205230	+	0	NA	intron (NM_015171, intron 1 of 23)	L2a|LINE|L2	7115	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
73027	chr15	40782171	40783000	+	0	NA	intron (NM_018163, intron 1 of 10)	intron (NM_018163, intron 1 of 10)	12605	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
162503	chr3	48577101	48577300	+	0	NA	intron (NM_000094, intron 65 of 118)	intron (NM_000094, intron 65 of 118)	1777	NR_031756	100313843		NR_031756	ENSG00000284251	MIR711	hsa-mir-711	microRNA 711	ncRNA
89494	chr16	89132171	89132730	+	0	NA	intron (NR_147928, intron 8 of 11)	intron (NR_147928, intron 8 of 11)	-4098	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
82580	chr16	18786521	18786780	+	0	NA	intron (NM_001019, intron 3 of 4)	AluJo|SINE|Alu	3684	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
11963	chr1	94019471	94019830	+	0	NA	exon (NM_000350, exon 36 of 50)	exon (NM_000350, exon 36 of 50)	101498	NM_000350	24		NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
152677	chr22	21606901	21607230	+	0	NA	intron (NM_003347, intron 2 of 3)	intron (NM_003347, intron 2 of 3)	22957	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
65581	chr14	52011551	52012380	+	0	NA	intron (NM_007361, intron 16 of 21)	MIR|SINE|MIR	22419	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
225975	chr9	41194771	41195380	+	0	NA	Intergenic	Intergenic	-5674	NM_001286836	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
171330	chr3	195991371	195991600	+	0	NA	Intergenic	AluYc|SINE|Alu	-1206	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
187858	chr5	147784321	147784680	+	0	NA	Intergenic	Intergenic	-1772	NM_001270941	9832		NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
61589	chr13	72782961	72783350	+	0	NA	intron (NM_006346, intron 1 of 17)	intron (NM_006346, intron 1 of 17)	1022	NR_146206	10464		NM_006346	ENSG00000083535	PIBF1	C13orf24|CEP90|JBTS33|PIBF	progesterone immunomodulatory binding factor 1	protein-coding
18795	chr1	167616051	167616350	+	0	NA	Intergenic	AluSx4|SINE|Alu	-13993	NM_001322923	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
45178	chr11	117275421	117275880	+	0	NA	intron (NM_207343, intron 6 of 14)	L1PB|LINE|L1	-15696	NR_037803	100379571		NR_037803		BACE1-AS	BACE1-AS1|BACE1AS|NCRNA00177	BACE1 antisense RNA	ncRNA
209170	chr7	75358621	75360200	+	0	NA	promoter-TSS (NR_003614)	promoter-TSS (NR_003614)	210	NR_040583	54441		NM_018991	ENSG00000290951	STAG3L1	STAG3L1P|STAG3L2|STAG3L3	STAG3 cohesin complex component like 1 (pseudogene)	pseudo
100548	chr17	62573271	62573430	+	0	NA	exon (NM_001284363, exon 10 of 20)	exon (NM_001284363, exon 10 of 20)	-54320	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
77663	chr15	85556651	85556950	+	0	NA	intron (NM_007200, intron 5 of 36)	L2b|LINE|L2	-63150	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
109676	chr19	1027701	1029000	+	0	NA	intron (NM_201277, intron 1 of 5)	CpG	1742	NM_001303501	1265		NM_004368	ENSG00000064666	CNN2	-	calponin 2	protein-coding
23292	chr1	228061671	228062180	+	0	NA	TTS (NM_033131)	TTS (NM_033131)	14625	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
232828	chr9	136734451	136734750	+	0	NA	Intergenic	LTR13|LTR|ERVK	-6416	NR_024543	84973		NM_032887	ENSG00000233016	SNHG7	NCRNA00061	small nucleolar RNA host gene 7	ncRNA
136346	chr2	175910321	175910400	+	0	NA	Intergenic	Intergenic	91907	NM_030650	80856		NM_030650	ENSG00000144320	LNPK	KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding
237476	chrX	119786571	119786730	+	0	NA	TTS (NR_002584)	TTS (NR_002584)	834	NR_002584	26779		NR_002584	ENSG00000206622	SNORA69	RNU69|U69|U69A	small nucleolar RNA, H/ACA box 69	snoRNA
177834	chr4	127589351	127589450	+	0	NA	Intergenic	L1PA2|LINE|L1	-43557	NM_015693	27152		NM_015693	ENSG00000164066	INTU	CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20	inturned planar cell polarity protein	protein-coding
45871	chr11	119696901	119697130	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	32185	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
41879	chr11	67243451	67244030	+	0	NA	intron (NM_012308, intron 13 of 20)	AluSq2|SINE|Alu	3726	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
81007	chr16	4142251	4142780	+	0	NA	Intergenic	Intergenic	-26073	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
221236	chr8	121822551	121823250	+	0	NA	Intergenic	Intergenic	-181460	NM_005328	3037		NM_005328	ENSG00000170961	HAS2	-	hyaluronan synthase 2	protein-coding
191637	chr6	13296151	13296250	+	0	NA	promoter-TSS (NR_160971)	promoter-TSS (NR_160971)	-614	NR_160971	100130357		NM_001242698	ENSG00000215022	LOC100130357	-	uncharacterized LOC100130357	ncRNA
138555	chr2	207621371	207622150	+	0	NA	intron (NM_001330137, intron 3 of 4)	intron (NM_001330137, intron 3 of 4)	3228	NM_145280	151194		NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase 21A, HSPA lysine	protein-coding
123355	chr19	53881101	53882610	+	0	NA	promoter-TSS (NM_002739)	promoter-TSS (NM_002739)	-342	NM_001316329	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
18760	chr1	167500621	167501250	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	17594	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
10578	chr1	67338151	67338250	+	0	NA	intron (NM_001374259, intron 8 of 16)	AluJb|SINE|Alu	30327	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
47457	chr12	3803851	3804200	+	0	NA	Intergenic	Intergenic	-50916	NM_001144958	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
48396	chr12	9645121	9645600	+	0	NA	intron (NR_046449, intron 1 of 3)	THE1B|LTR|ERVL-MaLR	2492	NR_046449	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
113035	chr19	7943201	7944900	+	0	NA	promoter-TSS (NM_006351)	promoter-TSS (NM_006351)	-384	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
105428	chr17	82882051	82883750	+	0	NA	intron (NM_005993, intron 14 of 38)	intron (NM_005993, intron 14 of 38)	-42878	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
108854	chr18	79317921	79318480	+	0	NA	intron (NM_198531, intron 15 of 29)	L1MC3|LINE|L1	-77730	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
154968	chr22	37275501	37275900	+	0	NA	Intergenic	Intergenic	-6808	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
47935	chr12	6823071	6823580	+	0	NA	intron (NM_014449, intron 1 of 4)	L3b|LINE|CR1	1504	NM_019858	27239		NM_014449	ENSG00000250510	GPR162	A-2|GRCA	G protein-coupled receptor 162	protein-coding
112802	chr19	7493351	7493850	+	0	NA	Intergenic	AluJr|SINE|Alu	-3948	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
15486	chr1	150373851	150374680	+	0	NA	intron (NM_015203, intron 1 of 10)	MER21B|LTR|ERVL	10154	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
102985	chr17	76730951	76731480	+	0	NA	intron (NM_001378348, intron 2 of 4)	AluSx|SINE|Alu	4376	NM_001378353	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
141573	chr2	241570501	241571300	+	0	NA	intron (NM_032515, intron 4 of 4)	intron (NM_032515, intron 4 of 4)	-11757	NR_033346	100379249		NR_033346		BOK-AS1	BOK-AS|BOKAS|NAToB|NCRNA00151	BOK antisense RNA 1	ncRNA
168630	chr3	149770271	149770430	+	0	NA	intron (NM_001144960, intron 4 of 5)	MamRTE1|LINE|RTE-BovB	-17851	NR_135149	51122		NM_016094	ENSG00000114744	COMMD2	HSPC042	COMM domain containing 2	protein-coding
20630	chr1	199170051	199170550	+	0	NA	intron (NR_147896, intron 3 of 3)	intron (NR_147896, intron 3 of 3)	21702	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
171284	chr3	195898171	195898530	+	0	NA	intron (NM_005781, intron 1 of 14)	MIRb|SINE|MIR	-2408	NM_001382274	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
231853	chr9	132849401	132849600	+	0	NA	intron (NM_001371771, intron 5 of 12)	MER58A|DNA|hAT-Charlie	28784	NM_001317958	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
73199	chr15	41515101	41515500	+	0	NA	Intergenic	AluSg7|SINE|Alu	-1473	NM_001135685	4058		NM_002344	ENSG00000062524	LTK	TYK1	leukocyte receptor tyrosine kinase	protein-coding
23561	chr1	229344271	229345230	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-1703	NM_145257	126731		NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
227886	chr9	93950371	93950530	+	0	NA	Intergenic	(CCCTCCC)n|Simple_repeat|Simple_repeat	4905	NM_021570	56033		NM_021570	ENSG00000131668	BARX1	-	BARX homeobox 1	protein-coding
52638	chr12	56279151	56279680	+	0	NA	intron (NM_004077, intron 6 of 10)	AluSx3|SINE|Alu	12089	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
93296	chr17	18151101	18151600	+	0	NA	intron (NM_016239, intron 38 of 64)	intron (NM_016239, intron 38 of 64)	-32478	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
149548	chr21	33109671	33109930	+	0	NA	Intergenic	Intergenic	13900	NR_109961	101928107		NR_109961	ENSG00000226527	LOC101928107	-	uncharacterized LOC101928107	ncRNA
9717	chr1	53130221	53130880	+	0	NA	intron (NM_001287595, intron 2 of 10)	intron (NM_001287595, intron 2 of 10)	12088	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
2969	chr1	11933821	11935300	+	0	NA	promoter-TSS (NM_000302)	promoter-TSS (NM_000302)	-157	NM_000302	5351		NM_000302	ENSG00000083444	PLOD1	EDS6|EDSKCL1|LH|LH1|LLH|PLOD	procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	protein-coding
140676	chr2	234076221	234076740	+	0	NA	intron (NM_006944, intron 7 of 7)	L2c|LINE|L2	25778	NM_006944	6694		NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
226118	chr9	62913051	62913150	+	0	NA	Intergenic	Intergenic	-15013	NR_122076	403323		NM_203449		LERFS	-	lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting	ncRNA
178214	chr4	142569251	142569550	+	0	NA	intron (NM_003866, intron 2 of 26)	MIR|SINE|MIR	-8645	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
28679	chr10	60709851	60710430	+	0	NA	intron (NM_001204403, intron 1 of 43)	Tigger2b_Pri|DNA|TcMar-Tigger	23388	NM_001204403	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
58987	chr13	19963971	19964330	+	0	NA	intron (NM_001190965, intron 2 of 24)	AluSx1|SINE|Alu	5126	NM_001353161	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
235725	chrX	48915121	48915950	+	0	NA	intron (NM_006875, intron 3 of 5)	MIR3|SINE|MIR	3489	NM_006875	11040		NM_006875	ENSG00000102096	PIM2	-	Pim-2 proto-oncogene, serine/threonine kinase	protein-coding
189446	chr5	172985671	172986380	+	0	NA	intron (NM_003945, intron 1 of 3)	Tigger3b|DNA|TcMar-Tigger	2254	NM_003945	8992		NM_003945	ENSG00000113732	ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase H+ transporting V0 subunit e1	protein-coding
185632	chr5	131524351	131524730	+	0	NA	intron (NM_016340, intron 6 of 27)	L1MEg|LINE|L1	110689	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
198739	chr6	108546521	108547180	+	0	NA	Intergenic	Intergenic	-12975	NM_201559	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
22277	chr1	212727621	212728280	+	0	NA	3' UTR (NM_015471, exon 6 of 6)	3' UTR (NM_015471, exon 6 of 6)	-28110	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
124131	chr19	55680451	55680750	+	0	NA	intron (NM_001321263, intron 2 of 10)	intron (NM_001321263, intron 2 of 10)	3975	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
90527	chr17	1479501	1479900	+	0	NA	exon (NM_001080950, exon 8 of 32)	exon (NM_001080950, exon 8 of 32)	5701	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
136073	chr2	173130621	173130880	+	0	NA	intron (NM_133646, intron 2 of 11)	intron (NM_133646, intron 2 of 11)	54904	NM_016653	51776		NM_016653	ENSG00000091436	MAP3K20	AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding
121806	chr19	47920951	47921300	+	0	NA	Intergenic	L1P4|LINE|L1	-2654	NR_024242	100191063		NR_024242		SNAR-A14	-	small NF90 (ILF3) associated RNA A14	snRNA
219258	chr8	67317971	67318380	+	0	NA	intron (NM_006421, intron 1 of 38)	AluY|SINE|Alu	25606	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
96478	chr17	40269421	40269680	+	0	NA	intron (NM_133264, intron 5 of 7)	intron (NM_133264, intron 5 of 7)	-18329	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
41661	chr11	66559251	66560880	+	0	NA	exon (NM_001258371, exon 13 of 21)	exon (NM_001258371, exon 13 of 21)	8541	NM_003793	8722		NM_003793	ENSG00000174080	CTSF	CATSF|CLN13	cathepsin F	protein-coding
45669	chr11	119026771	119027130	+	0	NA	exon (NM_001467, exon 6 of 10)	exon (NM_001467, exon 6 of 10)	2530	NM_001164280	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
203013	chr6	163427821	163428080	+	0	NA	intron (NM_206854, intron 1 of 6)	intron (NM_206854, intron 1 of 6)	13232	NM_006775	9444		NM_006775	ENSG00000112531	QKI	Hqk|QK|QK1|QK3|hqkI	QKI, KH domain containing RNA binding	protein-coding
213509	chr7	139066471	139067430	+	0	NA	intron (NM_020119, intron 7 of 12)	MER5A1|DNA|hAT-Charlie	-22793	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
171766	chr4	11601	12280	+	0	NA	Intergenic	TAR1|Satellite|telo	-41345	NM_001286054	152687		NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding
120139	chr19	42211951	42212530	+	0	NA	intron (NM_001270615, intron 3 of 4)	AluSx|SINE|Alu	5437	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
176293	chr4	87235521	87236750	+	0	NA	Intergenic	Intergenic	-15517	NM_001292006	57563		NM_020803	ENSG00000145332	KLHL8	-	kelch like family member 8	protein-coding
99456	chr17	50142771	50143350	+	0	NA	intron (NM_032595, intron 3 of 9)	L2c|LINE|L2	7617	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
209723	chr7	87039521	87040380	+	0	NA	intron (NM_001142749, intron 1 of 21)	L1PA2|LINE|L1	284	NM_001291990	222223		NM_152748	ENSG00000164659	ELAPOR2	EIG121L|KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein-coding
206520	chr7	34718721	34719050	+	0	NA	TTS (NR_015356)	TTS (NR_015356)	39387	NR_033664	404744		NM_207283	ENSG00000197085	NPSR1-AS1	AAA1	NPSR1 antisense RNA 1	ncRNA
116021	chr19	17159471	17160230	+	0	NA	intron (NM_004145, intron 8 of 39)	MER58A|DNA|hAT-Charlie	-55507	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
185555	chr5	131366871	131367550	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	103157	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
195291	chr6	36528671	36528830	+	0	NA	intron (NM_007271, intron 2 of 13)	intron (NM_007271, intron 2 of 13)	18729	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
22757	chr1	224384101	224384300	+	0	NA	TTS (NM_025160)	TTS (NM_025160)	14111	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
172109	chr4	1130201	1131100	+	0	NA	intron (NR_134676, intron 1 of 2)	MamTip2|DNA|hAT-Tip100	-7486	NR_033768	100379220		NR_033768	ENSG00000293496	TMED11P	p24a1|p24alpha1	transmembrane p24 trafficking protein 11, pseudogene	pseudo
97088	chr17	42411101	42411380	+	0	NA	intron (NM_012232, intron 1 of 1)	intron (NM_012232, intron 1 of 1)	12016	NM_012232	284119		NM_012232	ENSG00000177469	CAVIN1	CAVIN|CGL4|FKSG13|PTRF|cavin-1	caveolae associated protein 1	protein-coding
54972	chr12	96308351	96308450	+	0	NA	intron (NM_002595, intron 5 of 16)	AluJr4|SINE|Alu	52902	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
201732	chr6	149840601	149840930	+	0	NA	intron (NM_032832, intron 3 of 6)	intron (NM_032832, intron 3 of 6)	-22733	NR_045126	100652739		NR_045126	ENSG00000268592	RAET1E-AS1	RAET1G-AS1	RAET1E antisense RNA 1	ncRNA
123967	chr19	55410201	55410400	+	0	NA	Intergenic	L2a|LINE|L2	-2512	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
133084	chr2	112465401	112465600	+	0	NA	Intergenic	Intergenic	-16656	NM_001371712	150465		NM_153712	ENSG00000114999	TTL	-	tubulin tyrosine ligase	protein-coding
199188	chr6	111772521	111772780	+	0	NA	intron (NM_002037, intron 3 of 13)	L1MC5a|LINE|L1	-12733	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
143593	chr20	31692621	31692880	+	0	NA	intron (NR_134257, intron 1 of 2)	AluSg4|SINE|Alu	-28757	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
59364	chr13	24681771	24681930	+	0	NA	intron (NM_001185085, intron 2 of 22)	(TG)n|Simple_repeat|Simple_repeat	1439	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
73397	chr15	42607821	42608500	+	0	NA	intron (NM_020759, intron 3 of 32)	intron (NM_020759, intron 3 of 32)	32554	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
54301	chr12	89427551	89428380	+	0	NA	intron (NM_172240, intron 10 of 11)	intron (NM_172240, intron 10 of 11)	-75464	NM_001946	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
35572	chr11	1687101	1687700	+	0	NA	Intergenic	L1MB3|LINE|L1	-1771	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
28861	chr10	62669651	62670150	+	0	NA	Intergenic	Intergenic	-134820	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
16427	chr1	154557171	154557330	+	0	NA	intron (NM_017582, intron 1 of 12)	intron (NM_017582, intron 1 of 12)	1412	NM_017582	55585		NM_017582	ENSG00000160714	UBE2Q1	GTAP|NICE-5|NICE5|PRO3094|UBE2Q	ubiquitin conjugating enzyme E2 Q1	protein-coding
209624	chr7	77722871	77723250	+	0	NA	intron (NM_198467, intron 1 of 7)	AluSz|SINE|Alu	-25715	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
63706	chr14	21165021	21165450	+	0	NA	Intergenic	Intergenic	-9172	NM_001004731	390445		NM_001004731	ENSG00000169327	OR5AU1	OR14-38	olfactory receptor family 5 subfamily AU member 1	protein-coding
72901	chr15	40340371	40341050	+	0	NA	intron (NM_207380, intron 1 of 10)	intron (NM_207380, intron 1 of 10)	257	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
67504	chr14	70952951	70953330	+	0	NA	intron (NM_014982, intron 2 of 35)	AluJr|SINE|Alu	45681	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
233287	chr9	137314771	137315650	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-12939	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
103289	chr17	77841971	77842680	+	0	NA	Intergenic	Intergenic	41762	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
196926	chr6	52397801	52398800	+	0	NA	intron (NM_133367, intron 1 of 1)	AluSq2|SINE|Alu	-22042	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
170564	chr3	186798321	186798580	+	0	NA	intron (NM_002916, intron 3 of 10)	intron (NM_002916, intron 3 of 10)	8032	NM_002916	5984		NM_002916	ENSG00000163918	RFC4	A1|RFC37	replication factor C subunit 4	protein-coding
29452	chr10	70458301	70459430	+	0	NA	Intergenic	Intergenic	-10917	NM_001329906	4838		NM_018055	ENSG00000156574	NODAL	HTX5	nodal growth differentiation factor	protein-coding
72372	chr15	31359621	31360530	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	33240	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
142645	chr20	5761351	5761450	+	0	NA	intron (NM_152504, intron 1 of 2)	L1PA8|LINE|L1	10999	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
56903	chr12	120363971	120364530	+	0	NA	intron (NM_002442, intron 5 of 14)	intron (NM_002442, intron 5 of 14)	4914	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
28400	chr10	47687521	47688000	+	0	NA	Intergenic	Intergenic	-1940	NR_027634	439965		NR_027634		SHLD2P3	FAM35B2|FAM35DP	shieldin complex subunit 2 pseudogene 3	pseudo
66155	chr14	60346951	60347050	+	0	NA	Intergenic	Intergenic	23804	NR_146481	101927729		NR_146481	ENSG00000258556	LINC02322	-	long intergenic non-protein coding RNA 2322	ncRNA
29234	chr10	69089601	69090830	+	0	NA	intron (NM_001321054, intron 1 of 1)	intron (NM_001321054, intron 1 of 1)	2112	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
194884	chr6	34670401	34670600	+	0	NA	intron (NM_022758, intron 1 of 3)	L1MC4|LINE|L1	-25654	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
28168	chr10	43650071	43650230	+	0	NA	intron (NR_038867, intron 1 of 4)	intron (NR_038867, intron 1 of 4)	-1269	NM_006973	7580		NM_006973	ENSG00000169740	ZNF32	KOX30|ZNF637|Zfp637	zinc finger protein 32	protein-coding
177007	chr4	105708221	105709750	+	0	NA	promoter-TSS (NM_020395)	promoter-TSS (NM_020395)	201	NM_024751	79807		NM_024751	ENSG00000138780	GSTCD	-	glutathione S-transferase C-terminal domain containing	protein-coding
192015	chr6	16413051	16414900	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	175388	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
212232	chr7	121107851	121108200	+	0	NA	intron (NM_001105533, intron 6 of 17)	intron (NM_001105533, intron 6 of 17)	118634	NM_001105533	79974		NM_024913	ENSG00000106034	CPED1	C7orf58	cadherin like and PC-esterase domain containing 1	protein-coding
50072	chr12	44817471	44817980	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	57936	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
4508	chr1	21773401	21774030	+	0	NA	intron (NM_001350166, intron 1 of 26)	L1MC5a|LINE|L1	9434	NM_001350164	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
190313	chr5	179607801	179608800	+	0	NA	intron (NM_001040452, intron 17 of 17).2	intron (NM_001040452, intron 17 of 17).2	-4559	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
220408	chr8	100265701	100266050	+	0	NA	intron (NM_183419, intron 5 of 9)	intron (NM_183419, intron 5 of 9)	36318	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
146132	chr20	48634671	48634830	+	0	NA	exon (NM_020820, exon 33 of 40)	exon (NM_020820, exon 33 of 40)	193249	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
137424	chr2	196453671	196453850	+	0	NA	intron (NM_001348768, intron 1 of 28)	intron (NM_001348768, intron 1 of 28)	-91583	NM_001304840	57520		NM_020760	ENSG00000138411	HECW2	NDHSAL|NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
138632	chr2	210174801	210175450	+	0	NA	Intergenic	Intergenic	-3716	NM_152519	151050		NM_152519	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1 like	protein-coding
38044	chr11	35159001	35159450	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	-3725	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
83432	chr16	27273651	27274750	+	0	NA	intron (NR_037184, intron 1 of 4)	intron (NR_037184, intron 1 of 4)	-5428	NM_145080	197370		NM_145080	ENSG00000169189	NSMCE1	NSE1	NSE1 homolog, SMC5-SMC6 complex component	protein-coding
189479	chr5	173086851	173087150	+	0	NA	intron (NM_153607, intron 3 of 8)	AluSx1|SINE|Alu	30648	NM_153607	153222		NM_153607	ENSG00000164463	CREBRF	C5orf41|LRF	CREB3 regulatory factor	protein-coding
128760	chr2	62203521	62204130	+	0	NA	intron (NM_006577, intron 1 of 1)	MIRc|SINE|MIR	-2001	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
12343	chr1	101122601	101123480	+	0	NA	Intergenic	L2|LINE|L2	97194	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
235892	chrX	52918821	52919300	+	0	NA	Intergenic	Intergenic	20001	NM_001099684	727866		NM_001099684	ENSG00000179304	FAM156B	TMEM29B	family with sequence similarity 156 member B	protein-coding
178800	chr4	153496751	153497650	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	30840	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
4061	chr1	19060871	19061230	+	0	NA	Intergenic	Intergenic	-104374	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
39500	chr11	61029271	61029430	+	0	NA	Intergenic	AluSq2|SINE|Alu	57670	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
15260	chr1	149635101	149635700	+	0	NA	intron (NR_111950, intron 1 of 8)	intron (NR_111950, intron 1 of 8)	28388	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
114662	chr19	13058871	13059030	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	34171	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
59928	chr13	31141671	31142030	+	0	NA	intron (NM_001286503, intron 11 of 16)	intron (NM_001286503, intron 11 of 16)	20054	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
181121	chr5	37369821	37370080	+	0	NA	intron (NM_153485, intron 1 of 34)	intron (NM_153485, intron 1 of 34)	1156	NM_153485	9631		NM_004298	ENSG00000113569	NUP155	ATFB15|N155	nucleoporin 155	protein-coding
71084	chr14	104864671	104866250	+	0	NA	TTS (NR_162135)	TTS (NR_162135)	146	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
68961	chr14	91414571	91414730	+	0	NA	intron (NM_001080414, intron 2 of 29)	intron (NM_001080414, intron 2 of 29)	3170	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
140649	chr2	233639901	233640100	+	0	NA	intron (NM_019075, intron 1 of 4)	intron (NM_019075, intron 1 of 4)	3523	NM_019075	54575		NM_019075	ENSG00000242515	UGT1A10	GNT1|UDPGT|UGT-1A|UGT-1J|UGT1|UGT1-01|UGT1-10|UGT1.1|UGT1.10|UGT1A|UGT1A1|UGT1J|hUG-BR1	UDP glucuronosyltransferase family 1 member A10	protein-coding
190019	chr5	177493371	177493800	+	0	NA	intron (NM_203352, intron 2 of 12)	intron (NM_203352, intron 2 of 12)	4019	NR_103804	9260		NM_005451	ENSG00000196923	PDLIM7	LMP1|LMP3	PDZ and LIM domain 7	protein-coding
34967	chr11	496221	496500	+	0	NA	intron (NM_203389, intron 8 of 9).2	AluSz|SINE|Alu	10408	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
93485	chr17	18932671	18933630	+	0	NA	Intergenic	Intergenic	-17526	NM_001282417	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
167703	chr3	130751971	130752130	+	0	NA	Intergenic	AluSz|SINE|Alu	-5221	NM_014602	30849		NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding
38552	chr11	45916051	45916580	+	0	NA	intron (NM_057174, intron 2 of 10)	intron (NM_057174, intron 2 of 10)	1562	NM_057174	9409		NM_004813	ENSG00000121680	PEX16	PBD8A|PBD8B	peroxisomal biogenesis factor 16	protein-coding
187677	chr5	143222801	143223580	+	0	NA	non-coding (NR_146198, exon 23 of 23)	non-coding (NR_146198, exon 23 of 23)	30690	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
128491	chr2	58240751	58241450	+	0	NA	intron (NR_164659, intron 1 of 11)	CpG	207	NR_164659	55120		NM_018062	ENSG00000115392	FANCL	FAAP43|PHF9|POG	FA complementation group L	protein-coding
102492	chr17	75753451	75754480	+	0	NA	exon (NM_000213, exon 33 of 40)	exon (NM_000213, exon 33 of 40)	11227	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
15295	chr1	149841701	149842250	+	0	NA	promoter-TSS (NM_021059).2	promoter-TSS (NM_021059).2	-767	NM_021059	126961		NM_021059	ENSG00000203811	H3C14	H3|H3.2|H3/M|H3C13|H3C15|H3F2|H3FM|H3FN|HIST2H3C	H3 clustered histone 14	protein-coding
27467	chr10	32015951	32016250	+	0	NA	intron (NM_004521, intron 24 of 25)	AluJb|SINE|Alu	40325	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
83254	chr16	23907851	23907950	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	71917	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
152858	chr22	22292401	22293030	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-5383	NR_027293	96610		NM_080926		BMS1P20	IGL|IGLV|IGLV1	BMS1 pseudogene 20	pseudo
55567	chr12	106226751	106227190	+	0	NA	Intergenic	Intergenic	21050	NM_006825	10970		NM_006825	ENSG00000136026	CKAP4	CLIMP-63|CLIMP63|ERGIC-63|p63	cytoskeleton associated protein 4	protein-coding
211550	chr7	105488001	105488280	+	0	NA	intron (NM_001318164, intron 7 of 15)	intron (NM_001318164, intron 7 of 15)	20380	NM_001318163	54517		NM_019042	ENSG00000091127	PUS7	IDDABS	pseudouridine synthase 7	protein-coding
217178	chr8	26309101	26309300	+	0	NA	intron (NM_002717, intron 2 of 9)	Tigger1|DNA|TcMar-Tigger	15984	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
101051	chr17	64814851	64815150	+	0	NA	intron (NR_024386, intron 4 of 10)	intron (NR_024386, intron 4 of 10)	7102	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
43551	chr11	82965221	82965480	+	0	NA	Intergenic	L1PA13|LINE|L1	-63610	NM_001319214	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
126642	chr2	28872221	28872480	+	0	NA	Intergenic	AluSx|SINE|Alu	-2041	NM_017910	55006		NM_017910	ENSG00000171103	TRMT61B	-	tRNA methyltransferase 61B	protein-coding
76680	chr15	75727301	75727500	+	0	NA	TTS (NR_024595)	TTS (NR_024595)	3359	NM_175881	161753		NM_175881	ENSG00000182950	CIMAP1C	ODF3L1	ciliary microtubule associated protein 1C	protein-coding
155755	chr22	39208501	39208700	+	0	NA	Intergenic	Intergenic	32309	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
167954	chr3	136546751	136547380	+	0	NA	intron (NM_005862, intron 5 of 33)	intron (NM_005862, intron 5 of 33)	205313	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
110153	chr19	1627871	1628480	+	0	NA	intron (NM_003200, intron 5 of 18)	intron (NM_003200, intron 5 of 18)	-22713	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
133317	chr2	113888401	113888600	+	0	NA	intron (NR_110174, intron 1 of 4)	L2b|LINE|L2	-1434	NR_102318	10096		NM_005721	ENSG00000115091	ACTR3	ARP3	actin related protein 3	protein-coding
128517	chr2	60569401	60570080	+	0	NA	Intergenic	Intergenic	-16086	NM_022893	53335		NM_018014	ENSG00000119866	BCL11A	CTIP1|DILOS|EVI9|HBFQTL5|SMARCM1|ZNF856	BCL11 transcription factor A	protein-coding
203319	chr6	170159571	170159730	+	0	NA	promoter-TSS (NR_125878)	promoter-TSS (NR_125878)	-992	NR_125878	102724511		NR_125878	ENSG00000232197	LOC102724511	-	uncharacterized LOC102724511	ncRNA
122135	chr19	48858171	48860630	+	0	NA	intron (NM_020904, intron 7 of 19)	intron (NM_020904, intron 7 of 19)	9217	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
171798	chr4	498671	499930	+	0	NA	promoter-TSS (NM_001345994)	promoter-TSS (NM_001345994)	90	NM_001345989	54872		NM_017733	ENSG00000174227	PIGG	EMM|GPI7|LAS21|MRT53|NEDHSCA|PRO4405|RLGS1930	phosphatidylinositol glycan anchor biosynthesis class G (EMM blood group)	protein-coding
237449	chrX	119690071	119690490	+	0	NA	intron (NM_145799, intron 1 of 10)	intron (NM_145799, intron 1 of 10)	2888	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
136379	chr2	176112421	176112950	+	0	NA	Intergenic	CpG	-4093	NM_002148	3236		NM_002148	ENSG00000128710	HOXD10	HOX4|HOX4D|HOX4E|Hox-4.4	homeobox D10	protein-coding
183463	chr5	79242651	79243300	+	0	NA	intron (NM_152405, intron 1 of 10)	intron (NM_152405, intron 1 of 10)	6844	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
107447	chr18	46335801	46336200	+	0	NA	non-coding (NR_046357, exon 2 of 2)	non-coding (NR_046357, exon 2 of 2)	1776	NM_001256758	494470		NM_152470	ENSG00000141622	ARK2C	ARKL2|RNF111L2|RNF165|lncAMPC	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C	protein-coding
206377	chr7	30680821	30681080	+	0	NA	intron (NM_001202483, intron 2 of 12)	intron (NM_001202483, intron 2 of 12)	1506	NM_001883	1395		NM_001883	ENSG00000106113	CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
159832	chr3	16482321	16483900	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	30589	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
170105	chr3	183158551	183158900	+	0	NA	intron (NM_014398, intron 1 of 5)	intron (NM_014398, intron 1 of 5)	4009	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
222707	chr8	141305251	141306450	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	2438	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
109649	chr19	1005251	1005750	+	0	NA	exon (NM_138690, exon 3 of 9)	exon (NM_138690, exon 3 of 9)	5081	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
5698	chr1	26371471	26371630	+	0	NA	intron (NM_001114759, intron 1 of 5)	AluJo|SINE|Alu	1200	NM_001114759	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
99305	chr17	49804251	49804550	+	0	NA	intron (NM_001199155, intron 4 of 13)	intron (NM_001199155, intron 4 of 13)	15719	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
104981	chr17	81994151	81994650	+	0	NA	intron (NR_045351, intron 3 of 14)	CpG	16771	NM_024083	79058		NM_024083	ENSG00000169696	ASPSCR1	ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9	ASPSCR1 tether for SLC2A4, UBX domain containing	protein-coding
151823	chr22	18407421	18408480	+	0	NA	Intergenic	L1M3a|LINE|L1	-13434	NR_165629	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
30067	chr10	73868871	73869230	+	0	NA	intron (NR_160045, intron 1 of 17)	intron (NR_160045, intron 1 of 17)	5505	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
45003	chr11	116993501	116994350	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	104503	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
79913	chr16	1708221	1709430	+	0	NA	intron (NM_001318852, intron 1 of 31)	intron (NM_001318852, intron 1 of 31)	2630	NM_001040439	23162		NM_015133	ENSG00000138834	MAPK8IP3	JIP-3|JIP3|JSAP1|NEDBA|SYD2|syd	mitogen-activated protein kinase 8 interacting protein 3	protein-coding
167604	chr3	129571571	129571930	+	0	NA	exon (NM_015103, exon 16 of 36)	exon (NM_015103, exon 16 of 36)	23365	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
121587	chr19	47304771	47304930	+	0	NA	Intergenic	AluJb|SINE|Alu	-5011	NM_001736	728		NM_001736	ENSG00000197405	C5AR1	C5A|C5AR|C5R1|CD88	complement C5a receptor 1	protein-coding
48026	chr12	6945951	6947680	+	0	NA	TTS (NR_126035)	TTS (NR_126035)	238	NM_080548	5777		NM_002831	ENSG00000111679	PTPN6	HCP|HCPH|HPTP1C|PTP-1C|SH-PTP1|SHP-1|SHP-1L|SHP1	protein tyrosine phosphatase non-receptor type 6	protein-coding
60540	chr13	41460461	41461250	+	0	NA	intron (NM_014059, intron 2 of 4)	intron (NM_014059, intron 2 of 4)	3305	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
70314	chr14	101822851	101824200	+	0	NA	intron (NM_001161725, intron 3 of 15)	intron (NM_001161725, intron 3 of 15)	13662	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
157481	chr22	45307721	45308000	+	0	NA	Intergenic	Intergenic	-1100	NR_146323	55007		NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding
212066	chr7	115005301	115005530	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	-73543	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
193639	chr6	30816421	30816750	+	0	NA	intron (NR_130726, intron 1 of 1)	LTR12C|LTR|ERV1	14074	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
185083	chr5	118987871	118989180	+	0	NA	promoter-TSS (NM_001308081)	promoter-TSS (NM_001308081)	22	NM_173666	285605		NM_173666	ENSG00000169570	DTWD2	-	DTW domain containing 2	protein-coding
87434	chr16	70735201	70735800	+	0	NA	intron (NM_001351157, intron 12 of 17)	intron (NM_001351157, intron 12 of 17)	-19595	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
184485	chr5	100842551	100842850	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-26135	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
232104	chr9	133698951	133699450	+	0	NA	intron (NM_001134707, intron 13 of 20)	AluSp|SINE|Alu	39152	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
188008	chr5	149543921	149544430	+	0	NA	intron (NM_001892, intron 2 of 9)	intron (NM_001892, intron 2 of 9)	6190	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
198528	chr6	106533151	106533530	+	0	NA	intron (NM_001371242, intron 8 of 21)	L2a|LINE|L2	21485	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
87252	chr16	69766351	69766800	+	0	NA	intron (NM_001270455, intron 1 of 8)	L2a|LINE|L2	4243	NM_001270454	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
178351	chr4	145937201	145937880	+	0	NA	intron (NM_178835, intron 1 of 14)	CpG	1283	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
163730	chr3	52313871	52314230	+	0	NA	Intergenic	Intergenic	-2269	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
149567	chr21	33232601	33233100	+	0	NA	intron (NM_001385055, intron 1 of 9)	intron (NM_001385055, intron 1 of 9)	2912	NM_001385054	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
137209	chr2	191205201	191205650	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-39979	NM_001330237	4430		NM_012223	ENSG00000128641	MYO1B	MMI-alpha|MMIa|MYH-1c|myr1	myosin IB	protein-coding
52014	chr12	53980921	53982230	+	0	NA	Intergenic	Intergenic	-3571	NM_017409	3226		NM_017409	ENSG00000180818	HOXC10	HOX3I	homeobox C10	protein-coding
16846	chr1	155687601	155689800	+	0	NA	promoter-TSS (NM_004632)	promoter-TSS (NM_004632)	24	NM_001198902	55249		NM_018253	ENSG00000163374	YY1AP1	GRNG|HCCA1|HCCA2|YY1AP	YY1 associated protein 1	protein-coding
164250	chr3	57169851	57170500	+	0	NA	intron (NM_001318864, intron 1 of 13)	CpG	142	NM_001318864	54756		NM_017563	ENSG00000144730	IL17RD	HH18|IL-17RD|IL17RLM|SEF	interleukin 17 receptor D	protein-coding
129993	chr2	74035401	74035800	+	0	NA	intron (NM_001366022, intron 2 of 10)	AluSx1|SINE|Alu	32908	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
207207	chr7	43644721	43645030	+	0	NA	intron (NR_146940, intron 3 of 6)	AluJo|SINE|Alu	61767	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
100710	chr17	63846551	63847050	+	0	NA	Intergenic	FRAM|SINE|Alu	-4115	NM_001098426	6603		NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p|SGD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding
38756	chr11	47155221	47156050	+	0	NA	intron (NM_001003676, intron 5 of 7)	MIRb|SINE|MIR	21244	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
147480	chr20	59145751	59146700	+	0	NA	intron (NM_001384354, intron 1 of 7)	intron (NM_001384354, intron 1 of 7)	-17596	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
184618	chr5	106875801	106876000	+	0	NA	intron (NR_104671, intron 2 of 3)	HERVL18-int|LTR|ERVL	135114	NR_104671	102467213		NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA
142308	chr20	3469501	3469700	+	0	NA	Intergenic	AluSg|SINE|Alu	-1418	NM_001207047	8455		NM_012070	ENSG00000088812	ATRN	DPPT-L|MGCA	attractin	protein-coding
154947	chr22	37239971	37240330	+	0	NA	intron (NM_002872, intron 2 of 6)	intron (NM_002872, intron 2 of 6)	4119	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
169049	chr3	153164971	153165770	+	0	NA	3' UTR (NM_002886, exon 1 of 1)	3' UTR (NM_002886, exon 1 of 1)	3144	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
130186	chr2	84278321	84278580	+	0	NA	Intergenic	Intergenic	-12232	NR_003663	388965		NM_001013648		FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo
173982	chr4	26175201	26175620	+	0	NA	intron (NM_001374401, intron 1 of 11)	intron (NM_001374401, intron 1 of 11)	11952	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
161901	chr3	45972471	45973030	+	0	NA	intron (NM_024513, intron 6 of 17)	intron (NM_024513, intron 6 of 17)	23074	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
229143	chr9	114483771	114484300	+	0	NA	intron (NM_015404, intron 1 of 11)	LTR86B2|LTR|ERVL	19180	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
45361	chr11	118251891	118252750	+	0	NA	promoter-TSS (NR_104404)	promoter-TSS (NR_104404)	45	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
230680	chr9	128721421	128721880	+	0	NA	TTS (NM_013355)	TTS (NM_013355)	2477	NM_001318016	84885		NM_032799	ENSG00000160446	ZDHHC12	DHHC-12|ZNF400	zinc finger DHHC-type palmitoyltransferase 12	protein-coding
214117	chr7	144191021	144191500	+	0	NA	intron (NM_001368318, intron 1 of 1)	intron (NM_001368318, intron 1 of 1)	-4061	NR_126022	101928605		NR_126022		ARHGEF35-AS1	-	ARHGEF35 antisense RNA 1	ncRNA
41369	chr11	65978871	65979030	+	0	NA	intron (NM_005146, intron 19 of 19)	(GGTGG)n|Simple_repeat|Simple_repeat	17216	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
206093	chr7	27195921	27196480	+	0	NA	3' UTR (NM_000522, exon 2 of 2)	3' UTR (NM_000522, exon 2 of 2)	3891	NM_000522	3209		NM_000522	ENSG00000106031	HOXA13	HOX1|HOX1J	homeobox A13	protein-coding
36007	chr11	2897071	2897230	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-2541	NM_183233	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
107331	chr18	45670001	45671230	+	0	NA	intron (NM_001242692, intron 17 of 20)	MIRc|SINE|MIR	-53566	NM_001308278	6563		NM_015865	ENSG00000141469	SLC14A1	HUT11|HUT11A|HsT1341|JK|Jk(a)|Jk(b)|RACH1|RACH2|UT-B1|UT1|UTE	solute carrier family 14 member 1 (Kidd blood group)	protein-coding
52837	chr12	57076921	57077350	+	0	NA	intron (NM_015257, intron 1 of 7)	AluY|SINE|Alu	1656	NM_001130963	23306		NM_015257	ENSG00000166881	NEMP1	TMEM194|TMEM194A	nuclear envelope integral membrane protein 1	protein-coding
53357	chr12	64655101	64655500	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-32695	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
119791	chr19	41322551	41322930	+	0	NA	3' UTR (NM_052848, exon 5 of 5)	3' UTR (NM_052848, exon 5 of 5)	12263	NM_001346100	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
159711	chr3	15647151	15648080	+	0	NA	TTS (NM_001323582)	TTS (NM_001323582)	45646	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
107004	chr18	32056501	32057380	+	0	NA	intron (NM_017831, intron 4 of 5)	intron (NM_017831, intron 4 of 5)	-34934	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
173213	chr4	6891401	6891600	+	0	NA	Intergenic	AluSp|SINE|Alu	-17944	NM_001113361	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
227550	chr9	91907051	91907150	+	0	NA	intron (NM_001318204, intron 1 of 7)	intron (NM_001318204, intron 1 of 7)	43128	NM_004560	4920		NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
221178	chr8	120472371	120472730	+	0	NA	intron (NM_022045, intron 11 of 21)	MLT1H|LTR|ERVL-MaLR	27131	NM_022045	27085		NM_022045	ENSG00000172167	MTBP	MDM2BP	MDM2 binding protein	protein-coding
153021	chr22	23233201	23233400	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	-29467	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
161651	chr3	43320451	43320750	+	0	NA	intron (NM_017719, intron 3 of 6)	intron (NM_017719, intron 3 of 6)	31362	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
143020	chr20	20837571	20837730	+	0	NA	Intergenic	Intergenic	-125006	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
169192	chr3	156721971	156722130	+	0	NA	Intergenic	Intergenic	45386	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
230569	chr9	128504201	128505400	+	0	NA	promoter-TSS (NM_001003722)	promoter-TSS (NM_001003722)	81	NM_001003722	2733		NM_001499	ENSG00000119392	GLE1	CAAHC|CAAHD|GLE1L|LCCS|LCCS1|hGLE1	GLE1 RNA export mediator	protein-coding
100567	chr17	62724321	62725550	+	0	NA	intron (NM_001288779, intron 8 of 11)	intron (NM_001288779, intron 8 of 11)	18729	NR_147886	105371855		NR_147886	ENSG00000265702	LOC105371855	-	uncharacterized LOC105371855	ncRNA
117587	chr19	21604151	21605030	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	-45078	NR_144514	400682		NR_144514		LOC400682	-	zinc finger protein 100-like	pseudo
149710	chr21	34070771	34071130	+	0	NA	Intergenic	Intergenic	-2628	NM_032476	64968		NM_032476	ENSG00000243927	MRPS6	C21orf101|MRP-S6|RPMS6|S6mt|bS6m	mitochondrial ribosomal protein S6	protein-coding
47041	chr12	458421	458680	+	0	NA	Intergenic	Intergenic	-1389	NM_173593	283358		NM_173593	ENSG00000139044	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein-coding
119460	chr19	40422521	40422930	+	0	NA	3' UTR (NM_013376, exon 2 of 2)	3' UTR (NM_013376, exon 2 of 2)	3267	NM_013376	29950		NM_013376	ENSG00000197019	SERTAD1	SEI1|TRIP-Br1|TRIPBR1	SERTA domain containing 1	protein-coding
9633	chr1	52531421	52531930	+	0	NA	intron (NM_015269, intron 1 of 29)	intron (NM_015269, intron 1 of 29)	21415	NM_015269	23318		NM_015269	ENSG00000134744	TUT4	PAPD3|TENT3A|ZCCHC11	terminal uridylyl transferase 4	protein-coding
146513	chr20	49912001	49912450	+	0	NA	intron (NM_006038, intron 1 of 2)	AluSx1|SINE|Alu	1514	NM_001135773	9825		NM_006038	ENSG00000158480	SPATA2	PD1|PPP1R145|tamo	spermatogenesis associated 2	protein-coding
103853	chr17	79726171	79726530	+	0	NA	Intergenic	Intergenic	-4593	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
54609	chr12	92555951	92556550	+	0	NA	Intergenic	Intergenic	89571	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
84423	chr16	30374371	30374930	+	0	NA	promoter-TSS (NM_013292)	promoter-TSS (NM_013292)	-152	NM_013292	29895		NM_013292	ENSG00000180209	MYL11	DA1C|HUMMLC2B|MLC2B|MRLC2|MYLPF	myosin light chain 11	protein-coding
54063	chr12	76026421	76026880	+	0	NA	3' UTR (NM_007350, exon 2 of 2)	3' UTR (NM_007350, exon 2 of 2)	5126	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
169227	chr3	157131521	157131880	+	0	NA	Intergenic	AluJb|SINE|Alu	-8698	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
98139	chr17	46018551	46018930	+	0	NA	intron (NR_165166, intron 9 of 9)	intron (NR_165166, intron 9 of 9)	19490	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
49960	chr12	40223871	40224030	+	0	NA	Intergenic	Intergenic	-1047	NM_198578	120892		NM_198578	ENSG00000188906	LRRK2	AURA17|DARDARIN|PARK8|RIPK7|ROCO2	leucine rich repeat kinase 2	protein-coding
161378	chr3	41118571	41119000	+	0	NA	Intergenic	Intergenic	-80720	NM_001330729	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
193701	chr6	31133421	31133680	+	0	NA	intron (NM_014068, intron 3 of 5).5	intron (NM_014068, intron 3 of 5).5	5516	NM_014069	170680		NM_014069	ENSG00000204538	PSORS1C2	C6orf17|SPR1	psoriasis susceptibility 1 candidate 2	protein-coding
168937	chr3	152364071	152364230	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-23160	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
171562	chr3	196938921	196939180	+	0	NA	promoter-TSS (NR_046630)	promoter-TSS (NR_046630)	-827	NR_046630	100874001		NR_046630		NCBP2-AS1	-	NCBP2 antisense RNA 1	ncRNA
88011	chr16	81001671	81002250	+	0	NA	intron (NR_147838, intron 1 of 5)	intron (NR_147838, intron 1 of 5)	-4284	NM_001351973	56942		NM_020188	ENSG00000103121	CMC2	2310061C15Rik|C16orf61|DC13	C-X9-C motif containing 2	protein-coding
136397	chr2	176134321	176134580	+	0	NA	TTS (NR_038435)	TTS (NR_038435)	-2162	NR_148241	401021		NR_148241		LOC401021	-	uncharacterized LOC401021	ncRNA
78236	chr15	90665001	90666200	+	0	NA	TTS (NR_120371)	TTS (NR_120371)	5366	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
222882	chr8	142773971	142775080	+	0	NA	3' UTR (NM_001356370, exon 4 of 4)	3' UTR (NM_001356370, exon 4 of 4)	2006	NM_001356370	66004		NM_177457	ENSG00000180155	LYNX1	-	Ly6/neurotoxin 1	protein-coding
206399	chr7	30992321	30992400	+	0	NA	Intergenic	Intergenic	28407	NM_000823	2692		NM_000823	ENSG00000106128	GHRHR	GHRFR|GRFR|IGHD1B|IGHD4	growth hormone releasing hormone receptor	protein-coding
208881	chr7	73827901	73828900	+	0	NA	Intergenic	Intergenic	-2596	NM_001305	1364		NM_001305	ENSG00000189143	CLDN4	CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R	claudin 4	protein-coding
117806	chr19	29940701	29940900	+	0	NA	intron (NM_001252641, intron 1 of 10)	intron (NM_001252641, intron 1 of 10)	-1439	NM_003796	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
169343	chr3	160224151	160224580	+	0	NA	Intergenic	Intergenic	-1057	NM_001168214	401097		NM_001168214	ENSG00000180044	C3orf80	-	chromosome 3 open reading frame 80	protein-coding
120248	chr19	42403151	42403850	+	0	NA	intron (NM_005357, intron 8 of 9)	AluSz6|SINE|Alu	6352	NR_073180	100996307		NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
84375	chr16	30264621	30264880	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16337	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
189511	chr5	173328151	173328650	+	0	NA	5' UTR (NM_003714, exon 1 of 4)	5' UTR (NM_003714, exon 1 of 4)	1103	NM_003714	8614		NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding
90170	chr17	309201	309730	+	0	NA	intron (NM_006987, intron 5 of 9).2	intron (NM_006987, intron 5 of 9).2	-22054	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
49995	chr12	42234821	42235080	+	0	NA	3' UTR (NM_001190980, exon 3 of 3)	3' UTR (NM_001190980, exon 3 of 3)	3298	NM_005748	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
201536	chr6	149153021	149154730	+	0	NA	Intergenic	Intergenic	-64049	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
69418	chr14	94069501	94069900	+	0	NA	intron (NM_020414, intron 2 of 8).2	L1PB1|LINE|L1	11502	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
232565	chr9	136362761	136364700	+	0	NA	promoter-TSS (NM_001080849)	promoter-TSS (NM_001080849)	14	NM_001080849	728489		NM_001080849	ENSG00000213221	DNLZ	C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2	DNL-type zinc finger	protein-coding
2763	chr1	10691801	10692680	+	0	NA	intron (NM_017766, intron 4 of 15)	intron (NM_017766, intron 4 of 15)	104406	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
200633	chr6	136846071	136846480	+	0	NA	intron (NM_000288, intron 5 of 9)	intron (NM_000288, intron 5 of 9)	23683	NM_000288	5191		NM_000288	ENSG00000112357	PEX7	PBD9B|PTS2R|RCDP1|RD	peroxisomal biogenesis factor 7	protein-coding
21157	chr1	203696151	203696250	+	0	NA	intron (NM_001365783, intron 2 of 20)	AluSz|SINE|Alu	-33381	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
74806	chr15	63445201	63445400	+	0	NA	Intergenic	Intergenic	55070	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
44507	chr11	106091701	106091900	+	0	NA	intron (NM_015423, intron 4 of 5)	intron (NM_015423, intron 4 of 5)	-14062	NM_001330359	143879		NM_152433	ENSG00000182359	KBTBD3	BKLHD3	kelch repeat and BTB domain containing 3	protein-coding
189836	chr5	177092801	177093200	+	0	NA	intron (NM_022963, intron 7 of 15)	intron (NM_022963, intron 7 of 15)	3450	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
201811	chr6	150012151	150012680	+	0	NA	Intergenic	AluSx|SINE|Alu	-7271	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
229392	chr9	121181621	121181880	+	0	NA	intron (NM_016322, intron 7 of 7)	AluSc|SINE|Alu	-19733	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
50963	chr12	49547351	49547450	+	0	NA	intron (NM_001314030, intron 7 of 14)	L2b|LINE|L2	8370	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
89267	chr16	88665571	88665730	+	0	NA	intron (NR_024399, intron 1 of 3)	intron (NR_024399, intron 1 of 3)	2277	NR_024399	197187		NM_144986	ENSG00000260630	SNAI3-AS1	-	SNAI3 antisense RNA 1	ncRNA
171475	chr3	196500101	196500950	+	0	NA	intron (NM_152617, intron 1 of 5)	L1MB3|LINE|L1	3243	NM_152617	165918		NM_152617	ENSG00000163961	RNF168	RIDL|hRNF168	ring finger protein 168	protein-coding
212098	chr7	116145171	116145680	+	0	NA	Intergenic	Intergenic	-65114	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
189497	chr5	173232751	173233650	+	0	NA	exon (NM_004387, exon 2 of 2)	exon (NM_004387, exon 2 of 2)	2006	NM_001166176	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
174156	chr4	36254101	36254300	+	0	NA	intron (NR_122079, intron 3 of 4)	intron (NR_122079, intron 3 of 4)	-2318	NR_122080	439933		NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
202864	chr6	159832951	159833250	+	0	NA	Intergenic	Intergenic	32824	NM_001271862	154197		NM_173516	ENSG00000146453	PNLDC1	HsPNLDC1|SPGF57|Trimmer	PARN like ribonuclease domain containing exonuclease 1	protein-coding
178678	chr4	152521651	152521950	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	13233	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
185389	chr5	128087601	128088130	+	0	NA	intron (NR_046207, intron 1 of 26)	L2c|LINE|L2	4099	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
152970	chr22	23075371	23075930	+	0	NA	intron (NM_002073, intron 1 of 2)	intron (NM_002073, intron 1 of 2)	5131	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
63502	chr13	114226701	114227630	+	0	NA	Intergenic	AluJb|SINE|Alu	-7680	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
35776	chr11	2164551	2165050	+	0	NA	intron (NM_000360, intron 12 of 12)	intron (NM_000360, intron 12 of 12)	-3591	NM_001291897	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
105872	chr18	3213301	3213780	+	0	NA	intron (NM_019856, intron 2 of 36)	LTR65|LTR|ERV1	6428	NM_019856	8736		NM_003803	ENSG00000101605	MYOM1	SKELEMIN	myomesin 1	protein-coding
34749	chr11	175501	177080	+	0	NA	Intergenic	(ACCCTA)n|Simple_repeat|Simple_repeat	-16788	NM_145651	147199		NM_145651	ENSG00000188076	SCGB1C1	RYD5	secretoglobin family 1C member 1	protein-coding
191930	chr6	15602251	15602450	+	0	NA	intron (NM_183040, intron 6 of 8)	intron (NM_183040, intron 6 of 8)	60678	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
91220	chr17	3926821	3927080	+	0	NA	intron (NM_005173, intron 20 of 20)	intron (NM_005173, intron 20 of 20)	-10485	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
177444	chr4	112818021	112818280	+	0	NA	5' UTR (NM_001354254, exon 1 of 47)	5' UTR (NM_001354254, exon 1 of 47)	153	NM_001354274	287		NM_001148	ENSG00000145362	ANK2	ANK-2|CFAP87|FAP87|LQT4|brank-2	ankyrin 2	protein-coding
135464	chr2	161279401	161279600	+	0	NA	Intergenic	Intergenic	-24857	NR_110593	101929512		NR_110593		PSMD14-DT	-	PSMD14 divergent transcript	ncRNA
200734	chr6	137717371	137718080	+	0	NA	Intergenic	Intergenic	21312	NR_121618	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
85163	chr16	46625701	46625900	+	0	NA	Intergenic	Intergenic	-4421	NM_001324318	79801		NM_024745	ENSG00000171241	SHCBP1	PAL	SHC binding and spindle associated 1	protein-coding
142971	chr20	19968071	19969030	+	0	NA	intron (NM_001242581, intron 6 of 11)	intron (NM_001242581, intron 6 of 11)	-48740	NM_181528	51126		NM_016100	ENSG00000173418	NAA20	MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein-coding
51578	chr12	52616671	52617030	+	0	NA	intron (NM_175068, intron 1 of 8)	intron (NM_175068, intron 1 of 8)	1709	NM_175068	319101		NM_175068	ENSG00000186049	KRT73	CK-73|IRT6IRS3|K6IRS3|K73|KRT6IRS3	keratin 73	protein-coding
92557	chr17	8965201	8966600	+	0	NA	promoter-TSS (NM_001251853)	promoter-TSS (NM_001251853)	-188	NM_001251853	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
232472	chr9	136204351	136204450	+	0	NA	intron (NM_178138, intron 1 of 5)	intron (NM_178138, intron 1 of 5)	728	NM_178138	8022		NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding
187699	chr5	143360721	143361130	+	0	NA	intron (NR_157096, intron 1 of 7)	intron (NR_157096, intron 1 of 7)	42358	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
27294	chr10	30418371	30419110	+	0	NA	Intergenic	Intergenic	-15281	NM_001244134	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
35256	chr11	858801	859930	+	0	NA	intron (NM_001025235, intron 3 of 8)	CpG	14919	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
177050	chr4	107989421	107991130	+	0	NA	intron (NM_001184705, intron 1 of 8)	intron (NM_001184705, intron 1 of 8)	386	NM_005327	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
60815	chr13	45346751	45347050	+	0	NA	intron (NR_024458, intron 3 of 10)	AluSp|SINE|Alu	5555	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
88640	chr16	85635221	85635750	+	0	NA	intron (NM_014615, intron 2 of 15)	intron (NM_014615, intron 2 of 15)	22163	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
170282	chr3	184318421	184318780	+	0	NA	intron (NM_198244, intron 3 of 29)	AluSz|SINE|Alu	-1663	NM_004953	1981		NM_004953	ENSG00000114867	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma 1	protein-coding
110615	chr19	2197021	2197280	+	0	NA	intron (NM_032482, intron 7 of 27)	CpG	33217	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
150695	chr21	43706351	43707300	+	0	NA	Intergenic	AluJr4|SINE|Alu	-12304	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
226220	chr9	65778001	65778350	+	0	NA	Intergenic	Intergenic	-12946	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
225641	chr9	36357451	36357750	+	0	NA	intron (NM_194329, intron 4 of 10)	intron (NM_194329, intron 4 of 10)	42669	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
93761	chr17	19996671	19996830	+	0	NA	Intergenic	Intergenic	-12609	NM_001243439	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
43237	chr11	75477601	75477800	+	0	NA	exon (NM_030792, exon 3 of 17)	exon (NM_030792, exon 3 of 17)	-25373	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
170913	chr3	194133721	194135350	+	0	NA	Intergenic	CpG	-1613	NM_005524	3280		NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding
110488	chr19	2036501	2037200	+	0	NA	TTS (NM_017572)	TTS (NM_017572)	14394	NM_199054	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
107468	chr18	46963951	46964050	+	0	NA	intron (NM_001353908, intron 3 of 11)	CpG	17165	NM_001367621	83473		NM_031303	ENSG00000167216	KATNAL2	-	katanin catalytic subunit A1 like 2	protein-coding
11072	chr1	85197771	85198280	+	0	NA	intron (NM_032184, intron 1 of 6)	intron (NM_032184, intron 1 of 6)	2991	NM_032184	84144		NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
20727	chr1	200886921	200887180	+	0	NA	Intergenic	LTR54|LTR|ERV1	-4481	NM_018265	55765		NM_018265	ENSG00000163362	INAVA	C1orf106	innate immunity activator	protein-coding
173495	chr4	9367471	9367800	+	0	NA	promoter-TSS (NR_027279)	promoter-TSS (NR_027279)	-239	NR_027279	391622		NM_212553	ENSG00000205946	USP17L6P	DUB4|USP17L6|vDUB4	ubiquitin specific peptidase 17 like family member 6, pseudogene	pseudo
33918	chr10	124600601	124600800	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-103328	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
217236	chr8	26617971	26618380	+	0	NA	intron (NM_001244604, intron 3 of 13)	intron (NM_001244604, intron 3 of 13)	39770	NM_001244604	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
215944	chr8	8344001	8344200	+	0	NA	intron (NM_001369759, intron 3 of 5)	MER33|DNA|hAT-Charlie	42144	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
169076	chr3	153621671	153622280	+	0	NA	intron (NR_146713, intron 3 of 6)	HAL1|LINE|L1	137480	NR_160966	152118		NR_160966	ENSG00000237787	LINC02877	C3orf79	long intergenic non-protein coding RNA 2877	ncRNA
176326	chr4	87975121	87975700	+	0	NA	promoter-TSS (NM_000582)	promoter-TSS (NM_000582)	-240	NM_000582	6696		NM_000582	ENSG00000118785	SPP1	BNSP|BSPI|ETA-1|OPN	secreted phosphoprotein 1	protein-coding
182481	chr5	62400721	62400980	+	0	NA	intron (NM_001348077, intron 3 of 11)	AluJb|SINE|Alu	3055	NM_014473	27292		NM_014473	ENSG00000086189	DIMT1	DIM1|DIMT1L|HSA9761|HUSSY5	DIM1 rRNA methyltransferase and ribosome maturation factor	protein-coding
25351	chr10	6347521	6348980	+	0	NA	Intergenic	Intergenic	-2066	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
21359	chr1	204941701	204942000	+	0	NA	intron (NM_001378330, intron 2 of 15)	intron (NM_001378330, intron 2 of 15)	-2376	NM_001160331	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
138389	chr2	204114471	204114830	+	0	NA	Intergenic	Intergenic	177887	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
136891	chr2	189412321	189412750	+	0	NA	Intergenic	Intergenic	-28898	NM_001303096	84128		NM_032168	ENSG00000115368	WDR75	NET16|UTP17	WD repeat domain 75	protein-coding
123589	chr19	54467801	54468000	+	0	NA	intron (NM_145057, intron 2 of 2).4	intron (NM_145057, intron 2 of 2).4	-4122	NM_001301782	94059		NM_198988	ENSG00000275183	LENG9	-	leukocyte receptor cluster member 9	protein-coding
3800	chr1	16718351	16719250	+	0	NA	intron (NR_026567, intron 1 of 10)	intron (NR_026567, intron 1 of 10)	1357	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
208387	chr7	66680451	66680550	+	0	NA	intron (NM_001367722, intron 1 of 7)	AluSp|SINE|Alu	-1666	NM_001367740	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
64454	chr14	24236051	24236680	+	0	NA	intron (NM_001283023, intron 4 of 8)	intron (NM_001283023, intron 4 of 8)	3436	NM_001351026	51292		NM_016576	ENSG00000100938	GMPR2	GMPR 2	guanosine monophosphate reductase 2	protein-coding
115194	chr19	14459301	14460480	+	0	NA	intron (NM_002741, intron 9 of 21)	MER20|DNA|hAT-Charlie	15464	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
155114	chr22	37619951	37620330	+	0	NA	intron (NM_001172688, intron 5 of 17)	intron (NM_001172688, intron 5 of 17)	11100	NM_001172688	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
83930	chr16	29077051	29077530	+	0	NA	intron (NR_003369, intron 2 of 16)	AluSx3|SINE|Alu	2448	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
42949	chr11	73624551	73624850	+	0	NA	Intergenic	L2|LINE|L2	-21881	NM_021200	58473		NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding
68802	chr14	91243371	91244200	+	0	NA	intron (NM_001348437, intron 1 of 2)	intron (NM_001348437, intron 1 of 2)	919	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
211886	chr7	111097821	111098080	+	0	NA	intron (NM_001099660, intron 2 of 3)	intron (NM_001099660, intron 2 of 3)	6823	NM_018334	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
65996	chr14	58201801	58202000	+	0	NA	intron (NM_018477, intron 1 of 12)	AluJb|SINE|Alu	1751	NM_018477	55860		NM_018477	ENSG00000131966	ACTR10	ACTR11|Arp10|Arp11|HARP11	actin related protein 10	protein-coding
69850	chr14	99255251	99256750	+	0	NA	intron (NM_001282237, intron 2 of 3)	intron (NM_001282237, intron 2 of 3)	16197	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
108030	chr18	58896851	58896950	+	0	NA	intron (NM_001375912, intron 2 of 9)	intron (NM_001375912, intron 2 of 9)	32023	NM_001353538	55205		NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
67713	chr14	73457001	73457900	+	0	NA	intron (NM_003744, intron 1 of 11)	intron (NM_003744, intron 1 of 11)	1130	NM_003744	8650		NM_003744	ENSG00000133961	NUMB	C14orf41|S171|c14_5527	NUMB endocytic adaptor protein	protein-coding
123660	chr19	54832651	54833030	+	0	NA	intron (NM_001281971, intron 1 of 7).15	intron (NM_001281971, intron 1 of 7).15	133	NM_001281971	3809		NM_012314	ENSG00000221957	KIR2DS4	CD158I|KIR-2DS4|KIR1D|KIR412|KKA3|NKAT-8|NKAT8	killer cell immunoglobulin like receptor, two Ig domains and short cytoplasmic tail 4	protein-coding
218531	chr8	53858671	53859030	+	0	NA	intron (NM_001286674, intron 1 of 2)	intron (NM_001286674, intron 1 of 2)	7055	NM_001286675	8601		NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G protein signaling 20	protein-coding
184992	chr5	115068571	115069700	+	0	NA	Intergenic	Intergenic	100773	NM_001300759	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
131319	chr2	96126921	96127450	+	0	NA	intron (NM_001002036, intron 8 of 8)	L1MB8|LINE|L1	-10614	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
201317	chr6	144376351	144376650	+	0	NA	intron (NM_007124, intron 1 of 73)	AluJr|SINE|Alu	-29155	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
223166	chr8	143539371	143539530	+	0	NA	intron (NM_015117, intron 1 of 11)	intron (NM_015117, intron 1 of 11)	1997	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
188464	chr5	154646071	154646230	+	0	NA	Intergenic	AluSq|SINE|Alu	-36829	NM_001367715	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
218816	chr8	59107721	59108600	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	10987	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
17219	chr1	156279151	156279450	+	0	NA	intron (NM_001323617, intron 2 of 22)	MER20|DNA|hAT-Charlie	3525	NM_015327	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
237765	chrX	129757301	129757500	+	0	NA	intron (NM_003399, intron 14 of 20)	intron (NM_003399, intron 14 of 20)	18421	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
233051	chr9	137063751	137065050	+	0	NA	3' UTR (NM_178448, exon 6 of 6)	3' UTR (NM_178448, exon 6 of 6)	6157	NM_178448	89958		NM_178448	ENSG00000186193	SAPCD2	C9orf140|p42.3	suppressor APC domain containing 2	protein-coding
64232	chr14	23082571	23083080	+	0	NA	intron (NM_001164815, intron 3 of 17)	AluSq2|SINE|Alu	-11256	NM_001164816	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
232	chr1	875721	876450	+	0	NA	intron (NR_027055, intron 1 of 2)	intron (NR_027055, intron 1 of 2)	717	NR_027055	284593		NR_027055	ENSG00000230368	FAM41C	-	family with sequence similarity 41 member C	ncRNA
98337	chr17	46278171	46278330	+	0	NA	intron (NM_001103154, intron 4 of 4)	HAL1ME|LINE|L1	-16881	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
163398	chr3	50518671	50518830	+	0	NA	Intergenic	Intergenic	-14506	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
29950	chr10	73485701	73485900	+	0	NA	intron (NM_001289969, intron 1 of 12)	AluSx3|SINE|Alu	-9952	NR_132104	101929145		NR_132103	ENSG00000221817	PPP3CB-AS1	USP54-AS1	PPP3CB antisense RNA 1 (head to head)	ncRNA
148594	chr21	5107671	5108330	+	0	NA	Intergenic	L1MB3|LINE|L1	5940	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
234561	chrX	19739071	19739230	+	0	NA	intron (NM_001353892, intron 3 of 17)	Tigger16b|DNA|TcMar-Tigger	60623	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
222750	chr8	141413251	141413980	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-7773	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
134252	chr2	135170151	135170550	+	0	NA	3' UTR (NM_012233, exon 24 of 24)	3' UTR (NM_012233, exon 24 of 24)	33722	NR_145723	109616967		NR_145723	ENSG00000208308	SNORA40B	-	small nucleolar RNA, H/ACA box 40B	snoRNA
6754	chr1	30730001	30730230	+	0	NA	Intergenic	Intergenic	-6530	NM_002379	4146		NM_002379	ENSG00000162510	MATN1	CMP|CRTM	matrilin 1	protein-coding
135008	chr2	153509251	153509350	+	0	NA	Intergenic	MER52D|LTR|ERV1	-30538	NM_019845	56475		NM_019845	ENSG00000177519	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator homolog	protein-coding
201084	chr6	142810751	142811400	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	134101	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
133732	chr2	127397821	127398530	+	0	NA	Intergenic	Intergenic	-9710	NM_001371911	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
121969	chr19	48485851	48486350	+	0	NA	intron (NM_001080434, intron 15 of 15)	AluYa5|SINE|Alu	16731	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
204604	chr7	5354471	5354630	+	0	NA	intron (NM_001080495, intron 16 of 29)	intron (NM_001080495, intron 16 of 29)	68996	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
138083	chr2	202036571	202036730	+	0	NA	3' UTR (NM_003507, exon 1 of 1)	3' UTR (NM_003507, exon 1 of 1)	2063	NM_003507	8324		NM_003507	ENSG00000155760	FZD7	FzE3	frizzled class receptor 7	protein-coding
155636	chr22	38943401	38943600	+	0	NA	Intergenic	Intergenic	-14022	NM_001193289	100913187		NM_001193289		APOBEC3A_B	A3A|APOBEC3A	APOBEC3A and APOBEC3B deletion hybrid	protein-coding
115929	chr19	16623621	16624300	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	4244	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
159442	chr3	13866251	13867550	+	0	NA	intron (NM_004625, intron 2 of 3)	L2a|LINE|L2	13171	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
107837	chr18	54262071	54262230	+	0	NA	Intergenic	Intergenic	-7329	NR_147257	11201		NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB|eta2	DNA polymerase iota	protein-coding
237839	chrX	130089221	130089780	+	0	NA	intron (NM_001127197, intron 1 of 8)	AluJb|SINE|Alu	20997	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
24015	chr1	235262351	235262850	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-64616	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
75736	chr15	68258771	68259230	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-18745	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
223198	chr8	143579601	143580150	+	0	NA	intron (NM_032378, intron 9 of 9)	intron (NM_032378, intron 9 of 9)	-1545	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
211507	chr7	105268861	105269550	+	0	NA	promoter-TSS (NM_001350744)	promoter-TSS (NM_001350744)	-128	NM_001350744	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
28371	chr10	47260471	47260630	+	0	NA	Intergenic	Intergenic	-39647	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
112787	chr19	7478821	7479080	+	0	NA	intron (NM_080662, intron 3 of 4)	intron (NM_080662, intron 3 of 4)	10085	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
163366	chr3	50475071	50475630	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	28284	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
72862	chr15	40272271	40272430	+	0	NA	exon (NM_001276717, exon 4 of 10)	exon (NM_001276717, exon 4 of 10)	10236	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
131013	chr2	87860151	87860450	+	0	NA	intron (NM_001024457, intron 1 of 22).2	MLT1A0|LTR|ERVL-MaLR	-34452	NM_001382344	400966		NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2|ranBP2L6	RANBP2 like and GRIP domain containing 1	protein-coding
53159	chr12	57937351	57937650	+	0	NA	Intergenic	AluSz|SINE|Alu	-1336	NR_038269	100506844		NR_038269	ENSG00000257698	GIHCG	-	GIHCG inhibitor of miR-200b/200a/429 expression	ncRNA
208014	chr7	55565751	55566280	+	0	NA	intron (NM_001321244, intron 1 of 5)	intron (NM_001321244, intron 1 of 5)	5853	NM_001321250	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
28902	chr10	63128421	63128680	+	0	NA	Intergenic	MER57E1|LTR|ERV1	-4697	NM_001282405	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
204954	chr7	6351501	6351900	+	0	NA	Intergenic	Alu|SINE|Alu	-2733	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
41167	chr11	65615001	65616390	+	0	NA	promoter-TSS (NM_032223)	promoter-TSS (NM_032223)	-617	NM_032223	399909		NM_032223	ENSG00000197136	PCNX3	PCNXL3	pecanex 3	protein-coding
37854	chr11	33736001	33738530	+	0	NA	promoter-TSS (NM_000611)	promoter-TSS (NM_000611)	-786	NM_203329	966		NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
25896	chr10	11272851	11273400	+	0	NA	intron (NM_001326330, intron 7 of 12)	intron (NM_001326330, intron 7 of 12)	71549	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
38083	chr11	35200451	35200550	+	0	NA	intron (NM_001001389, intron 6 of 16)	intron (NM_001001389, intron 6 of 16)	37550	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
199453	chr6	117603851	117603950	+	0	NA	Intergenic	Intergenic	-1389	NM_020399	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
204703	chr7	5524701	5525600	+	0	NA	non-coding (NR_126168, exon 4 of 4)	non-coding (NR_126168, exon 4 of 4)	5451	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
221062	chr8	116869221	116869880	+	0	NA	intron (NM_006265, intron 1 of 13)	AluSz6|SINE|Alu	-4874	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
74281	chr15	57641151	57641530	+	0	NA	intron (NR_104370, intron 10 of 11)	intron (NR_104370, intron 10 of 11)	49436	NR_104370	145781		NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GCOM1, MYZAP-POLR2M combined locus	protein-coding
152699	chr22	21632351	21633330	+	0	NA	promoter-TSS (NM_152612)	promoter-TSS (NM_152612)	43	NM_001331066	164592		NM_152612	ENSG00000161180	CCDC116	-	coiled-coil domain containing 116	protein-coding
112619	chr19	6760621	6761500	+	0	NA	intron (NM_005490, intron 2 of 9)	MamRep1879|DNA|hAT-Tip100?	6375	NM_005490	10045		NM_005490	ENSG00000125731	SH2D3A	NSP1	SH2 domain containing 3A	protein-coding
215022	chr7	152405421	152405680	+	0	NA	intron (NM_170606, intron 1 of 58)	intron (NM_170606, intron 1 of 58)	30453	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
123948	chr19	55389701	55390130	+	0	NA	3' UTR (NM_001136134, exon 4 of 4)	3' UTR (NM_001136134, exon 4 of 4)	1734	NR_106863	102465483		NR_106863	ENSG00000284029	MIR6805	hsa-mir-6805	microRNA 6805	ncRNA
12384	chr1	101266921	101267480	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	30181	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
144975	chr20	37269701	37270130	+	0	NA	Intergenic	Intergenic	-8101	NM_001184731	2691		NM_021081	ENSG00000118702	GHRH	GHRF|GRF|INN	growth hormone releasing hormone	protein-coding
238219	chrX	139930821	139931500	+	0	NA	intron (NM_001353810, intron 2 of 29)	intron (NM_001353810, intron 2 of 29)	1893	NM_001353811	286410		NM_173694	ENSG00000101974	ATP11C	ATPIG|ATPIQ|HACXL	ATPase phospholipid transporting 11C	protein-coding
59874	chr13	30660001	30660200	+	0	NA	3' UTR (NM_001321532, exon 8 of 8)	3' UTR (NM_001321532, exon 8 of 8)	25885	NM_001321534	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
108217	chr18	63163971	63164750	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	155409	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
139190	chr2	219228871	219230530	+	0	NA	promoter-TSS (NM_001282792)	promoter-TSS (NM_001282792)	-64	NR_104255	79065		NM_024085	ENSG00000198925	ATG9A	APG9L1|MGD3208|mATG9	autophagy related 9A	protein-coding
47610	chr12	5965901	5966250	+	0	NA	intron (NM_000552, intron 47 of 51)	intron (NM_000552, intron 47 of 51)	-19843	NM_001278597	57101		NM_020373	ENSG00000047617	ANO2	C12orf3|TMEM16B	anoctamin 2	protein-coding
71043	chr14	104787851	104788300	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	5526	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
61247	chr13	49995321	49995610	+	0	NA	TTS (NR_037407)	TTS (NR_037407)	1036	NR_037407	100500908		NR_037407	ENSG00000264864	MIR3613	-	microRNA 3613	ncRNA
20915	chr1	202185771	202186200	+	0	NA	intron (NR_002930, intron 15 of 21)	intron (NR_002930, intron 15 of 21)	-8005	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
38276	chr11	41304121	41304780	+	0	NA	intron (NM_001258419, intron 1 of 6)	SVA_F|Retroposon|SVA	155186	NM_020929	57689		NM_020929	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
107496	chr18	47876871	47877030	+	0	NA	intron (NM_001003652, intron 2 of 10)	intron (NM_001003652, intron 2 of 10)	53709	NM_005901	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
98906	chr17	48595321	48595580	+	0	NA	promoter-TSS (NR_110330)	promoter-TSS (NR_110330)	-508	NR_110330	404266		NR_033201	ENSG00000233101	HOXB-AS3	-	HOXB cluster antisense RNA 3	ncRNA
156035	chr22	39961121	39962730	+	0	NA	intron (NM_001291828, intron 2 of 4)	MamRep434|DNA|TcMar-Tigger	15108	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
231289	chr9	130034421	130035400	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluJb|SINE|Alu	8279	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
95892	chr17	38885451	38885550	+	0	NA	intron (NM_001271608, intron 2 of 5)	intron (NM_001271608, intron 2 of 5)	15442	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
54470	chr12	92008921	92009380	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	132563	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
101287	chr17	66401421	66401830	+	0	NA	intron (NR_110822, intron 3 of 3)	L2c|LINE|L2	15229	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
187970	chr5	149434321	149434780	+	0	NA	Intergenic	Intergenic	3904	NR_029686	406937		NR_029686	ENSG00000276365	MIR145	MIRN145|miR-145|miRNA145	microRNA 145	ncRNA
178857	chr4	154361471	154361630	+	0	NA	intron (NM_001142552, intron 3 of 7).2	intron (NM_001142552, intron 3 of 7).2	130249	NM_001142552	54798		NM_017639	ENSG00000197410	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding
186265	chr5	134530571	134530730	+	0	NA	intron (NM_015288, intron 1 of 10)	intron (NM_015288, intron 1 of 10)	4542	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
87772	chr16	75319751	75320280	+	0	NA	intron (NM_006324, intron 5 of 6)	intron (NM_006324, intron 5 of 6)	-52008	NM_001170715	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
95923	chr17	38919051	38919350	+	0	NA	non-coding (NR_073384, exon 8 of 8)	non-coding (NR_073384, exon 8 of 8)	4221	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
173162	chr4	6687871	6688100	+	0	NA	non-coding (NR_147207, exon 3 of 3)	non-coding (NR_147207, exon 3 of 3)	2534	NR_147207	339988		NR_147207	ENSG00000246526	LINC02481	LINC002481	long intergenic non-protein coding RNA 2481	ncRNA
148402	chr20	63936751	63937700	+	0	NA	Intergenic	AluY|SINE|Alu	4319	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
130966	chr2	87538351	87539100	+	0	NA	Intergenic	MIRc|SINE|MIR	68775	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
170234	chr3	184188751	184189150	+	0	NA	exon (NM_001351300, exon 9 of 21)	exon (NM_001351300, exon 9 of 21)	2875	NM_001351299	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
94267	chr17	28698551	28699100	+	0	NA	intron (NM_003170, intron 32 of 36)	L3|LINE|CR1	11279	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
44731	chr11	111924921	111925630	+	0	NA	intron (NM_080659, intron 2 of 3)	L2b|LINE|L2	-1535	NM_001368245	1410		NM_001885	ENSG00000109846	CRYAB	CMD1II|CRYA2|CTPP2|CTRCT16|HEL-S-101|HSPB5|MFM2	crystallin alpha B	protein-coding
68362	chr14	77718721	77719180	+	0	NA	intron (NM_001318844, intron 12 of 12)	AluSx|SINE|Alu	10847	NM_031210	81892		NM_031210	ENSG00000119705	SLIRP	C14orf156|DC50|PD04872	SRA stem-loop interacting RNA binding protein	protein-coding
238901	chrX	154630051	154630350	+	0	NA	Intergenic	L1PA13|LINE|L1	2982	NR_027401	100132967		NR_027401	ENSG00000279245	FAM223A	CXorf52|LINC00204A|NCRNA00204|NCRNA00204A|SPCX	family with sequence similarity 223 member A	ncRNA
167003	chr3	125971051	125971380	+	0	NA	intron (NM_001308313, intron 2 of 6)	L1MEd|LINE|L1	2037	NM_001308313	152015		NM_001012337	ENSG00000114547	ROPN1B	-	rhophilin associated tail protein 1B	protein-coding
227109	chr9	85804801	85806250	+	0	NA	promoter-TSS (NR_029410)	promoter-TSS (NR_029410)	-477	NR_029410	389765		NR_029410		LOC389765	-	kinesin family member 27 pseudogene	pseudo
190719	chr6	290321	290780	+	0	NA	Intergenic	MIR3|SINE|MIR	-1507	NM_020185	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
17257	chr1	156373071	156373430	+	0	NA	intron (NR_146763, intron 2 of 11)	AluJr|SINE|Alu	4039	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
156656	chr22	41638021	41639050	+	0	NA	intron (NM_001288976, intron 6 of 12)	AluSc|SINE|Alu	17240	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
21317	chr1	204515601	204516800	+	0	NA	promoter-TSS (NM_001278518)	promoter-TSS (NM_001278518)	-179	NM_001204172	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
180258	chr5	1668221	1669050	+	0	NA	Intergenic	Intergenic	-34630	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
39570	chr11	61134751	61135050	+	0	NA	intron (NM_017966, intron 2 of 4)	intron (NM_017966, intron 2 of 4)	26526	NM_017966	55048		NM_017966	ENSG00000167987	VPS37C	-	VPS37C subunit of ESCRT-I	protein-coding
160610	chr3	31421671	31422030	+	0	NA	Intergenic	Intergenic	-111075	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
194442	chr6	33164751	33165550	+	0	NA	intron (NM_080680, intron 63 of 65).6	intron (NM_080680, intron 63 of 65).6	21826	NR_138084	414768		NR_138084		HCG24	-	HLA complex group 24	ncRNA
186427	chr5	135913851	135914350	+	0	NA	Intergenic	Intergenic	-16197	NR_152420	26223		NM_012159		FBXL21P	FBL3B|FBXL21|FBXL3B|FBXL3P|Fbl21	F-box and leucine rich repeat protein 21, pseudogene	pseudo
238651	chrX	153989721	153990500	+	0	NA	Intergenic	Intergenic	-8934	NR_036175	100422877		NR_036175	ENSG00000283694	MIR3202-2	mir-3202-2	microRNA 3202-2	ncRNA
115574	chr19	15835571	15836500	+	0	NA	non-coding (NR_015379, exon 3 of 3)	non-coding (NR_015379, exon 3 of 3)	7088	NR_015379	652995		NR_015379	ENSG00000214049	UCA1	CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36	urothelial cancer associated 1	ncRNA
103630	chr17	78745251	78746150	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSc|SINE|Alu	-8798	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
128060	chr2	47792621	47793500	+	0	NA	intron (NM_001281493, intron 2 of 8)	AluSx|SINE|Alu	9105	NM_001281494	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
5252	chr1	25022051	25023260	+	0	NA	promoter-TSS (NR_039623)	promoter-TSS (NR_039623)	-848	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
212562	chr7	128885371	128885530	+	0	NA	intron (NM_001366122, intron 26 of 39)	MIRc|SINE|MIR	19120	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
25450	chr10	6595251	6595780	+	0	NA	Intergenic	L1MB1|LINE|L1	-14869	NM_001323265	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
93142	chr17	17740651	17741550	+	0	NA	intron (NM_030665, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	25202	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
163854	chr3	52486571	52487330	+	0	NA	intron (NM_007184, intron 15 of 20)	intron (NM_007184, intron 15 of 20)	-8388	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
203136	chr6	166944601	166945200	+	0	NA	intron (NM_003730, intron 4 of 8)	intron (NM_003730, intron 4 of 8)	11650	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
156906	chr22	42254601	42255080	+	0	NA	intron (NM_005650, intron 1 of 5)	AluY|SINE|Alu	-14913	NR_036498	388906		NR_036498		OGFRP1	-	opioid growth factor receptor pseudogene 1	pseudo
122204	chr19	48958921	48959200	+	0	NA	intron (NM_001291428, intron 4 of 5)	intron (NM_001291428, intron 4 of 5)	4185	NM_138761	581		NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
112251	chr19	5782851	5782950	+	0	NA	TTS (NM_001134316)	TTS (NM_001134316)	1846	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
99423	chr17	50109651	50110150	+	0	NA	TTS (NM_001257359)	TTS (NM_001257359)	14205	NM_001199899	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
170380	chr3	184748651	184748750	+	0	NA	Intergenic	Intergenic	24455	NR_110043	101928992		NR_110043	ENSG00000229433	LINC02069	-	long intergenic non-protein coding RNA 2069	ncRNA
57550	chr12	122193551	122193650	+	0	NA	intron (NM_152759, intron 7 of 11)	AluSz6|SINE|Alu	-10081	NM_001330492	79369		NM_030765	ENSG00000176383	B3GNT4	B3GN-T4|beta3Gn-T4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding
45073	chr11	117066751	117066850	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJr|SINE|Alu	31628	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
226322	chr9	69028701	69029500	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-6652	NM_000144	2395		NM_000144	ENSG00000165060	FXN	CyaY|FA|FARR|FRDA|X25	frataxin	protein-coding
99375	chr17	49953601	49953800	+	0	NA	Intergenic	(ACACAA)n|Simple_repeat|Simple_repeat	-15490	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
222007	chr8	130019351	130019450	+	0	NA	Intergenic	Intergenic	-2271	NM_001353269	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
139243	chr2	219380671	219380900	+	0	NA	intron (NR_134970, intron 11 of 12)	(AT)n|Simple_repeat|Simple_repeat	6577	NM_001319118	23549		NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
45286	chr11	118048571	118049630	+	0	NA	intron (NM_001354434, intron 2 of 5)	LTR88c|LTR|Gypsy?	-27912	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
220286	chr8	98011651	98011750	+	0	NA	intron (NM_030583, intron 10 of 18)	intron (NM_030583, intron 10 of 18)	30517	NR_002581	26775		NR_002581	ENSG00000207067	SNORA72	RNU72|U72	small nucleolar RNA, H/ACA box 72	snoRNA
171098	chr3	195500551	195500850	+	0	NA	Intergenic	Intergenic	42625	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
212475	chr7	128527171	128527330	+	0	NA	Intergenic	AluY|SINE|Alu	50502	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
166297	chr3	112558721	112558980	+	0	NA	intron (NM_022488, intron 1 of 11)	AluSp|SINE|Alu	-2470	NM_001348906	55032		NM_017945	ENSG00000138459	SLC35A5	-	solute carrier family 35 member A5	protein-coding
190687	chr6	146551	147050	+	0	NA	intron (NR_109817, intron 2 of 2)	intron (NR_109817, intron 2 of 2)	1359	NR_109817	107105278		NR_109817		SEPTIN14P6	C6orf88|LINC00266-3|NCRNA00266-3|NCRNA00266C|SEPT14P6|dJ24O22.2	septin 14 pseudogene 6	pseudo
155055	chr22	37501171	37501330	+	0	NA	intron (NM_014550, intron 11 of 19)	intron (NM_014550, intron 11 of 19)	-14863	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
127438	chr2	42172721	42173130	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-2694	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
154453	chr22	35399301	35400980	+	0	NA	promoter-TSS (NM_006739)	promoter-TSS (NM_006739)	0	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
179431	chr4	184343521	184344230	+	0	NA	intron (NR_040108, intron 2 of 2)	LTR33A|LTR|ERVL	10102	NR_040108	728175		NR_040108	ENSG00000180712	LINC02363	-	long intergenic non-protein coding RNA 2363	ncRNA
131278	chr2	96095151	96095450	+	0	NA	Intergenic	L1MB5|LINE|L1	21271	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
209329	chr7	76191951	76192050	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-9896	NM_001291831	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
1155	chr1	2200971	2201580	+	0	NA	intron (NM_001282670, intron 3 of 7)	intron (NM_001282670, intron 3 of 7)	6458	NM_001146310	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
139327	chr2	219554001	219555580	+	0	NA	TTS (NM_001173431)	TTS (NM_001173431)	-5643	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
23146	chr1	226719051	226719150	+	0	NA	intron (NM_002221, intron 2 of 7)	AluSz6|SINE|Alu	20075	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
101751	chr17	72422551	72423050	+	0	NA	intron (NR_152516, intron 2 of 3)	intron (NR_152516, intron 2 of 3)	79989	NR_135222	146795		NR_135222	ENSG00000264026	LINC02003	-	long intergenic non-protein coding RNA 2003	ncRNA
54371	chr12	89758171	89758530	+	0	NA	Intergenic	L1PA16|LINE|L1	-48984	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
51346	chr12	51395301	51396150	+	0	NA	intron (NM_001258401, intron 1 of 24)	intron (NM_001258401, intron 1 of 24)	-4319	NM_007210	11226		NM_007210	ENSG00000139629	GALNT6	GALNAC-T6|GalNAcT6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding
191803	chr6	14382551	14382650	+	0	NA	Intergenic	Intergenic	-97146	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
208155	chr7	64568951	64570540	+	0	NA	Intergenic	CpG	-4950	NR_077227	100128885		NR_077227		LOC100128885	-	uncharacterized LOC100128885	ncRNA
9332	chr1	46607251	46607430	+	0	NA	TTS (NM_145279)	TTS (NM_145279)	-3072	NM_001377373	8569		NM_003684	ENSG00000079277	MKNK1	MNK1	MAPK interacting serine/threonine kinase 1	protein-coding
166122	chr3	111310871	111311350	+	0	NA	Intergenic	MLT1J2-int|LTR|ERVL-MaLR	-231087	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
58015	chr12	124390121	124390480	+	0	NA	intron (NM_001077261, intron 18 of 47)	intron (NM_001077261, intron 18 of 47)	-53058	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
201032	chr6	141815051	141815350	+	0	NA	Intergenic	L1PA2|LINE|L1	-317959	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
133784	chr2	127703151	127703780	+	0	NA	3' UTR (NM_018383, exon 22 of 22)	3' UTR (NM_018383, exon 22 of 22)	1968	NM_032740	84826		NM_032740	ENSG00000173349	SFT2D3	-	SFT2 domain containing 3	protein-coding
54902	chr12	96037551	96037830	+	0	NA	intron (NM_001256644, intron 1 of 17)	L2c|LINE|L2	-2029	NR_132659	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
70154	chr14	100292621	100293500	+	0	NA	intron (NM_001352822, intron 4 of 4)	CpG	13384	NM_001291814	123096		NM_152333	ENSG00000197119	SLC25A29	C14orf69|CACL|ORNT3	solute carrier family 25 member 29	protein-coding
140344	chr2	232609601	232610000	+	0	NA	intron (NM_001243252, intron 1 of 3)	intron (NM_001243252, intron 1 of 3)	3743	NM_001243252	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
96195	chr17	39751521	39751930	+	0	NA	Intergenic	Intergenic	11758	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
195818	chr6	41201901	41202330	+	0	NA	promoter-TSS (NM_024807)	promoter-TSS (NM_024807)	-966	NM_024807	79865		NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
210479	chr7	100158071	100159550	+	0	NA	promoter-TSS (NM_018275)	promoter-TSS (NM_018275)	-87	NM_018275	55262		NM_018275	ENSG00000146826	TRAPPC14	C7orf43|MAP11|MCPH25	trafficking protein particle complex subunit 14	protein-coding
116721	chr19	18454371	18454730	+	0	NA	intron (NM_006532, intron 6 of 11)	intron (NM_006532, intron 6 of 11)	-16417	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
37039	chr11	12175571	12176200	+	0	NA	intron (NR_144415, intron 2 of 26)	L2a|LINE|L2	12202	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
48053	chr12	7017851	7019160	+	0	NA	promoter-TSS (NM_005768)	promoter-TSS (NM_005768)	-29	NM_005768	10162		NM_005768	ENSG00000111684	LPCAT3	C3F|LPCAT|LPLAT 5|LPLAT12|LPSAT|MBOAT5|OACT5|nessy	lysophosphatidylcholine acyltransferase 3	protein-coding
209023	chr7	74449951	74450650	+	0	NA	Intergenic	Intergenic	-3606	NM_001199207	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
19591	chr1	179367501	179368080	+	0	NA	intron (NM_144696, intron 2 of 25)	intron (NM_144696, intron 2 of 25)	1746	NR_073544	126859		NM_144619	ENSG00000162779	AXDND1	C1orf125	axonemal dynein light chain domain containing 1	protein-coding
5984	chr1	26961771	26962300	+	0	NA	Intergenic	L1ME3F|LINE|L1	-1567	NM_152365	126695		NM_152365	ENSG00000175707	KDF1	C1orf172|ECTD12	keratinocyte differentiation factor 1	protein-coding
171066	chr3	195437671	195438050	+	0	NA	intron (NM_012287, intron 1 of 22)	intron (NM_012287, intron 1 of 22)	5160	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
203713	chr7	1058701	1059200	+	0	NA	3' UTR (NM_001303474, exon 3 of 3)	3' UTR (NM_001303474, exon 3 of 3)	3580	NM_001303474	115330		NM_138445	ENSG00000164849	GPR146	PGR8	G protein-coupled receptor 146	protein-coding
1366	chr1	2508721	2509500	+	0	NA	intron (NM_018216, intron 18 of 18).2	intron (NM_018216, intron 18 of 18).2	17486	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
1481	chr1	2746621	2746880	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	54118	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
72748	chr15	39608051	39608350	+	0	NA	intron (NM_001324338, intron 11 of 11)	intron (NM_001324338, intron 11 of 11)	27121	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
96408	chr17	40153471	40153830	+	0	NA	intron (NM_007359, intron 3 of 13)	L1MA9|LINE|L1	-8283	NR_106926	102466986		NR_106926	ENSG00000284144	MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
96160	chr17	39686771	39686930	+	0	NA	intron (NM_033419, intron 1 of 7)	intron (NM_033419, intron 1 of 7)	1207	NM_033419	93210		NM_033419	ENSG00000161395	PGAP3	AGLA546|CAB2|PERLD1|PP1498|hCOS16	post-GPI attachment to proteins phospholipase 3	protein-coding
230148	chr9	127746801	127747800	+	0	NA	intron (NM_170600, intron 5 of 11)	intron (NM_170600, intron 5 of 11)	7982	NM_001142534	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
136773	chr2	181456601	181458580	+	0	NA	5' UTR (NM_001316312, exon 1 of 5)	5' UTR (NM_001316312, exon 1 of 5)	204	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
139570	chr2	224941371	224941530	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	5599	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
231937	chr9	133123171	133123730	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	-2210	NM_006266	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
101939	chr17	74490921	74491180	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	24416	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
39621	chr11	61427021	61427480	+	0	NA	intron (NR_165417, intron 2 of 9)	intron (NR_165417, intron 2 of 9)	2725	NM_024811	79869		NM_024811	ENSG00000149532	CPSF7	CFIm59	cleavage and polyadenylation specific factor 7	protein-coding
223578	chr8	144272301	144272850	+	0	NA	intron (NM_015201, intron 3 of 15)	intron (NM_015201, intron 3 of 15)	6122	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
238378	chrX	149937651	149939900	+	0	NA	promoter-TSS (NM_001013845)	promoter-TSS (NM_001013845)	227	NR_027456	100272228		NR_027456	ENSG00000235703	EOLA2-DT	LINC00894	EOLA2 divergent transcript	ncRNA
127867	chr2	45777451	45777550	+	0	NA	intron (NM_005400, intron 1 of 14)	MIR3|SINE|MIR	125825	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
13089	chr1	111596251	111596950	+	0	NA	intron (NM_001370216, intron 1 of 7)	MLT1A0|LTR|ERVL-MaLR	11718	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
167309	chr3	128697801	128699050	+	0	NA	Intergenic	Intergenic	-27758	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
133683	chr2	127084221	127086630	+	0	NA	promoter-TSS (NM_001320642)	promoter-TSS (NM_001320642)	-875	NM_001320642	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
130998	chr2	87803971	87804330	+	0	NA	intron (NM_001382344, intron 7 of 22).2	AluJr|SINE|Alu	21617	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
134350	chr2	136127221	136127880	+	0	NA	Intergenic	Intergenic	-9401	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
50002	chr12	42296651	42296830	+	0	NA	Intergenic	LTR41|LTR|ERVL	27119	NR_107005	102467003		NR_107005	ENSG00000278520	MIR7851	hsa-mir-7851	microRNA 7851	ncRNA
177707	chr4	122005821	122006080	+	0	NA	Intergenic	Intergenic	-53890	NM_001130698	7222		NM_003305	ENSG00000138741	TRPC3	SCA41|TRP3	transient receptor potential cation channel subfamily C member 3	protein-coding
192715	chr6	26331221	26332580	+	0	NA	Intergenic	Intergenic	-33259	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
53117	chr12	57816601	57816800	+	0	NA	promoter-TSS (NM_006576)	promoter-TSS (NM_006576)	-631	NM_006576	10677		NM_006576	ENSG00000135407	AVIL	ADVIL|DOC6|NPHS21|p92	advillin	protein-coding
28470	chr10	49407451	49408300	+	0	NA	Intergenic	Intergenic	-11786	NM_001276451	644168		NM_001080520	ENSG00000165606	DRGX	DRG11|PRRXL1	dorsal root ganglia homeobox	protein-coding
109344	chr19	613621	614200	+	0	NA	exon (NM_001194, exon 7 of 8)	exon (NM_001194, exon 7 of 8)	19627	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
47884	chr12	6699821	6701430	+	0	NA	promoter-TSS (NM_001244015)	promoter-TSS (NM_001244015)	190	NM_001244014	196500		NM_153685	ENSG00000139200	PIANP	C12orf53|LEDA1|PANP|leda-1	PILR alpha associated neural protein	protein-coding
126923	chr2	32869201	32869600	+	0	NA	intron (NR_027098, intron 2 of 5)	SVA_F|Retroposon|SVA	43967	NR_027098	285045		NR_027098	ENSG00000230876	LINC00486	-	long intergenic non-protein coding RNA 486	ncRNA
56973	chr12	120540551	120541280	+	0	NA	intron (NM_001330474, intron 1 of 16)	AluSp|SINE|Alu	6559	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
73787	chr15	45705281	45706250	+	0	NA	intron (NR_135680, intron 1 of 4)	MIRb|SINE|MIR	570	NR_135680	105370802		NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA
72302	chr15	31169421	31169680	+	0	NA	Intergenic	AluYb8|SINE|Alu	-8277	NM_001252020	4308		NM_002420	ENSG00000134160	TRPM1	CSNB1C|LTRPC1|MLSN1	transient receptor potential cation channel subfamily M member 1	protein-coding
148174	chr20	63536301	63536500	+	0	NA	intron (NM_005975, intron 1 of 7)	intron (NM_005975, intron 1 of 7)	970	NM_001256358	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
136674	chr2	181036851	181037750	+	0	NA	intron (NM_001278554, intron 3 of 5)	Tigger3b|DNA|TcMar-Tigger	56176	NM_001278554	10477		NM_006357	ENSG00000170035	UBE2E3	UBCH9|UbcM2	ubiquitin conjugating enzyme E2 E3	protein-coding
4822	chr1	23615071	23615330	+	0	NA	Intergenic	Intergenic	-12134	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
69496	chr14	95519521	95520930	+	0	NA	Intergenic	Intergenic	-3575	NM_001384284	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
203614	chr7	947551	947800	+	0	NA	intron (NM_001284308, intron 1 of 10)	L2b|LINE|L2	-1859	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
19262	chr1	172699091	172700330	+	0	NA	Intergenic	Intergenic	40607	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
200850	chr6	138407301	138407800	+	0	NA	intron (NM_014320, intron 3 of 3)	MLT1A0-int|LTR|ERVL-MaLR	3327	NM_014320	23593		NM_014320	ENSG00000051620	HEBP2	C6ORF34B|C6orf34|PP23|SOUL	heme binding protein 2	protein-coding
97830	chr17	44911051	44911830	+	0	NA	exon (NM_002055, exon 6 of 9)	exon (NM_002055, exon 6 of 9)	4060	NM_001131019	2670		NM_002055	ENSG00000131095	GFAP	ALXDRD	glial fibrillary acidic protein	protein-coding
63776	chr14	21260801	21261250	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluJo|SINE|Alu	8417	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
67574	chr14	71554051	71554650	+	0	NA	intron (NM_001354289, intron 5 of 23)	intron (NM_001354289, intron 5 of 23)	-31948	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
72971	chr15	40567101	40567680	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-1903	NM_001286407	27079		NM_152260	ENSG00000166133	RPUSD2	C15orf19|C18B11|PUS9	RNA pseudouridine synthase domain containing 2	protein-coding
20439	chr1	198517721	198517980	+	0	NA	Intergenic	Intergenic	22830	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
120316	chr19	43503631	43505230	+	0	NA	intron (NM_198850, intron 1 of 15)	CpG-14620	403	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
35502	chr11	1532071	1532230	+	0	NA	Intergenic	Intergenic	40121	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
169572	chr3	170365551	170366050	+	0	NA	intron (NM_001145098, intron 3 of 7)	AluSq2|SINE|Alu	6177	NM_001248008	6498		NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding
113735	chr19	10481921	10482430	+	0	NA	Intergenic	AluJr|SINE|Alu	20596	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
197515	chr6	75761551	75761650	+	0	NA	intron (NR_160538, intron 1 of 32)	(AC)n|Simple_repeat|Simple_repeat	12361	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
172507	chr4	2259251	2259350	+	0	NA	intron (NM_006454, intron 2 of 5)	intron (NM_006454, intron 2 of 5)	2809	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
158621	chr3	4899871	4900430	+	0	NA	intron (NR_037903, intron 2 of 2)	intron (NR_037903, intron 2 of 2)	6351	NR_125914	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
71724	chr15	20354001	20354200	+	0	NA	Intergenic	L1MC5a|LINE|L1	71356	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
10508	chr1	66764921	66765280	+	0	NA	intron (NM_152665, intron 2 of 4)	L2a|LINE|L2	12641	NM_152665	200132		NM_152665	ENSG00000152760	DYNLT5	TCTEX1D1	dynein light chain Tctex-type family member 5	protein-coding
114255	chr19	11540671	11540850	+	0	NA	intron (NM_001308341, intron 2 of 7)	intron (NM_001308341, intron 2 of 7)	1909	NM_001308341	1264		NM_001299	ENSG00000130176	CNN1	HEL-S-14|SMCC|Sm-Calp	calponin 1	protein-coding
127361	chr2	39216451	39217500	+	0	NA	intron (NM_001009565, intron 2 of 7)	intron (NM_001009565, intron 2 of 7)	12613	NM_001346911	344387		NM_001009565	ENSG00000205111	CDKL4	-	cyclin dependent kinase like 4	protein-coding
65918	chr14	55322971	55323330	+	0	NA	intron (NM_152231, intron 1 of 1)	AluY|SINE|Alu	50996	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
45801	chr11	119336351	119337030	+	0	NA	3' UTR (NM_032015, exon 1 of 1)	3' UTR (NM_032015, exon 1 of 1)	2163	NM_032015	79102		NM_032015	ENSG00000173456	RNF26	-	ring finger protein 26	protein-coding
81077	chr16	4340601	4340800	+	0	NA	intron (NM_016069, intron 4 of 4)	intron (NM_016069, intron 4 of 4)	10621	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
41809	chr11	66958021	66959400	+	0	NA	promoter-TSS (NM_000920)	promoter-TSS (NM_000920)	-327	NM_001040716	5091		NM_000920	ENSG00000173599	PC	PCB	pyruvate carboxylase	protein-coding
45495	chr11	118624621	118625250	+	0	NA	exon (NM_015157, exon 6 of 24)	exon (NM_015157, exon 6 of 24)	17320	NM_001144759	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
179368	chr4	183430651	183431150	+	0	NA	Intergenic	Intergenic	-13736	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
174203	chr4	37566721	37567000	+	0	NA	intron (NM_001104629, intron 2 of 3)	AluSz|SINE|Alu	-17373	NM_018302	55286		NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding
223986	chr9	2053351	2054650	+	0	NA	intron (NM_003070, intron 5 of 33)	intron (NM_003070, intron 5 of 33)	32055	NM_001289396	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
53319	chr12	64609901	64611600	+	0	NA	intron (NR_040718, intron 1 of 3)	CpG	255	NM_178169	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
63256	chr13	113947351	113947950	+	0	NA	Intergenic	Intergenic	-18659	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
148620	chr21	5548821	5549280	+	0	NA	Intergenic	Intergenic	-4587	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
45108	chr11	117101601	117101900	+	0	NA	Intergenic	AluSc|SINE|Alu	-3322	NM_001366687	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
221598	chr8	125509771	125510500	+	0	NA	Intergenic	Intergenic	77926	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
136120	chr2	173946771	173946930	+	0	NA	intron (NM_001172712, intron 4 of 6)	AluJb|SINE|Alu	17030	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
236626	chrX	74568621	74568880	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	45874	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
45460	chr11	118528401	118528600	+	0	NA	intron (NM_001346097, intron 2 of 3)	intron (NM_001346097, intron 2 of 3)	1026	NM_001080441	143941		NM_001080441	ENSG00000172425	TTC36	HBP21	tetratricopeptide repeat domain 36	protein-coding
213107	chr7	131222051	131222400	+	0	NA	intron (NM_001145354, intron 2 of 18)	MIR|SINE|MIR	105554	NR_125364	100506881		NR_125364	ENSG00000236753	MKLN1-AS	MKLN1-AS2	MKLN1 antisense RNA	ncRNA
120537	chr19	44906401	44907030	+	0	NA	intron (NM_000041, intron 2 of 3)	intron (NM_000041, intron 2 of 3)	314	NM_001302690	348		NM_000041	ENSG00000130203	APOE	AD2|APO-E|ApoE4|LDLCQ5|LPG	apolipoprotein E	protein-coding
22207	chr1	212466601	212466980	+	0	NA	Intergenic	Intergenic	33870	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
198039	chr6	90177651	90178230	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	118903	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
202356	chr6	157725071	157725230	+	0	NA	Intergenic	L1MEc|LINE|L1	-98096	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
173934	chr4	25655071	25655230	+	0	NA	promoter-TSS (NM_006424)	promoter-TSS (NM_006424)	-701	NM_001177998	10568		NM_006424	ENSG00000157765	SLC34A2	NAPI-3B|NAPI-IIb|NPTIIb|NaPi2b|PULAM	solute carrier family 34 member 2	protein-coding
133266	chr2	113440251	113440980	+	0	NA	intron (NM_001330340, intron 2 of 16)	L1M5|LINE|L1	2924	NR_138473	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
214471	chr7	150367401	150368300	+	0	NA	promoter-TSS (NM_001099696)	promoter-TSS (NM_001099696)	-246	NM_001362746	29803		NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
7059	chr1	31980771	31981690	+	0	NA	Intergenic	MIR|SINE|MIR	-32638	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
183608	chr5	80211051	80211780	+	0	NA	intron (NM_001174072, intron 1 of 11)	LTR64|LTR|ERV1	44633	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
122810	chr19	50380671	50381130	+	0	NA	intron (NM_001256647, intron 7 of 8)	L2a|LINE|L2	-3423	NM_001256849	5424		NM_002691	ENSG00000062822	POLD1	CDC2|CRCS10|MDPL|POLD	DNA polymerase delta 1, catalytic subunit	protein-coding
169465	chr3	168211371	168211680	+	0	NA	Intergenic	Intergenic	-37997	NR_021485	93556		NR_021485		EGFEM1P	C3orf50|NCRNA00259	EGF like and EMI domain containing 1, pseudogene	pseudo
79530	chr16	816271	816630	+	0	NA	Intergenic	Intergenic	11007	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
235025	chrX	40014411	40015400	+	0	NA	Intergenic	CpG	83053	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
44120	chr11	96054921	96055400	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-131053	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
28609	chr10	58211801	58212000	+	0	NA	intron (NM_152230, intron 4 of 5)	AluJb|SINE|Alu	55994	NM_152230	253430		NM_152230	ENSG00000151151	IPMK	-	inositol polyphosphate multikinase	protein-coding
48786	chr12	11732901	11733100	+	0	NA	intron (NM_001987, intron 1 of 7)	MIRb|SINE|MIR	83326	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
234423	chrX	16822901	16823100	+	0	NA	intron (NM_018360, intron 3 of 9)	intron (NM_018360, intron 3 of 9)	36534	NM_018360	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
18385	chr1	161389721	161391380	+	0	NA	Intergenic	CpG	-22674	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
183958	chr5	88660771	88661530	+	0	NA	intron (NR_152242, intron 2 of 3)	CpG	5789	NR_030741	407047		NR_030741	ENSG00000284447	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2	microRNA 9-2	ncRNA
9710	chr1	53110501	53110700	+	0	NA	intron (NM_001287596, intron 3 of 3)	intron (NM_001287596, intron 3 of 3)	32038	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
33996	chr10	124680271	124680580	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-23603	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
164352	chr3	58034501	58035730	+	0	NA	intron (NM_001164319, intron 1 of 44)	intron (NM_001164319, intron 1 of 44)	26693	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
97728	chr17	44365021	44365280	+	0	NA	Intergenic	Intergenic	-1297	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
133298	chr2	113602721	113604600	+	0	NA	promoter-TSS (NR_024004)	promoter-TSS (NR_024004)	57	NR_024004	84771		NM_032685		DDX11L2	-	DEAD/H-box helicase 11 like 2 (pseudogene)	pseudo
71212	chr14	105089401	105089600	+	0	NA	Intergenic	Intergenic	-4647	NR_110546	102723354		NR_110546		LINC02298	-	long intergenic non-protein coding RNA 2298	ncRNA
199947	chr6	127914351	127914800	+	0	NA	intron (NM_001164687, intron 1 of 5).2	Tigger3a|DNA|TcMar-Tigger	4056	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
32931	chr10	110273521	110274250	+	0	NA	intron (NM_005962, intron 3 of 5)	intron (NM_005962, intron 3 of 5)	31035	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
130612	chr2	85993751	85994830	+	0	NA	Intergenic	Intergenic	105010	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
222834	chr8	142545301	142546050	+	0	NA	TTS (NM_001702)	TTS (NM_001702)	68804	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
173078	chr4	6197551	6199100	+	0	NA	intron (NM_144720, intron 1 of 12)	intron (NM_144720, intron 1 of 12)	2224	NM_001099433	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
92519	chr17	8905101	8905700	+	0	NA	intron (NM_001142633, intron 4 of 18)	MARNA|DNA|TcMar-Mariner	7117	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
52966	chr12	57470901	57472330	+	0	NA	TTS (NM_032496)	TTS (NM_032496)	6252	NM_001319851	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
161219	chr3	39180071	39181360	+	0	NA	Intergenic	Intergenic	11880	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
69285	chr14	93078401	93078600	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	11048	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
105245	chr17	82415671	82415830	+	0	NA	intron (NM_175902, intron 1 of 9)	intron (NM_175902, intron 1 of 9)	-2597	NM_173620	284004		NM_173620	ENSG00000169660	HEXD	HEXDC	hexosaminidase D	protein-coding
198333	chr6	104489621	104489950	+	0	NA	Intergenic	L1PA2|LINE|L1	369761	NM_001321084	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
31422	chr10	95694951	95695050	+	0	NA	promoter-TSS (NM_001143973)	promoter-TSS (NM_001143973)	-857	NM_001143973	26123		NM_015631	ENSG00000119977	TCTN3	C10orf61|JBTS18|OFD4|TECT3	tectonic family member 3	protein-coding
11194	chr1	88180571	88180750	+	0	NA	Intergenic	Intergenic	-503484	NM_001320707	5586		NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
111848	chr19	4581371	4582280	+	0	NA	Intergenic	CpG	-22141	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
28063	chr10	43286951	43287750	+	0	NA	Intergenic	Intergenic	-20285	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
139821	chr2	230410201	230410430	+	0	NA	Intergenic	Intergenic	-5841	NM_001206703	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
86920	chr16	68082021	68082300	+	0	NA	Intergenic	Intergenic	-3210	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
224152	chr9	4901651	4902100	+	0	NA	Intergenic	L1PA7|LINE|L1	51578	NR_029836	406894		NR_029836	ENSG00000199065	MIR101-2	MIRN101-2|mir-101-2	microRNA 101-2	ncRNA
119873	chr19	41463251	41464280	+	0	NA	intron (NR_040109, intron 3 of 3)	LTR2B|LTR|ERV1	20609	NM_001130514	100170765		NM_001130514	ENSG00000204978	ERICH4	C19orf69	glutamate rich 4	protein-coding
118756	chr19	38371451	38372030	+	0	NA	TTS (NM_021185)	TTS (NM_021185)	-2831	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
42642	chr11	72418951	72419250	+	0	NA	intron (NM_001258394, intron 2 of 17)	intron (NM_001258394, intron 2 of 17)	15431	NM_030813	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
168289	chr3	141502221	141502480	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	15323	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
220764	chr8	102404651	102404950	+	0	NA	intron (NM_001282873, intron 1 of 58)	AluSq|SINE|Alu	-7539	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
64688	chr14	32484301	32484500	+	0	NA	intron (NM_004274, intron 2 of 13)	intron (NM_004274, intron 2 of 13)	155102	NM_004274	9472		NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding
9309	chr1	46520251	46520450	+	0	NA	Intergenic	Intergenic	13351	NM_147192	127343		NM_147192	ENSG00000197587	DMBX1	Atx|MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
17777	chr1	159091621	159092300	+	0	NA	Intergenic	Intergenic	-15059	NM_001348247	9447		NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding
121189	chr19	46519801	46520000	+	0	NA	exon (NM_001363873, exon 4 of 4)	exon (NM_001363873, exon 4 of 4)	-24033	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
179396	chr4	183721251	183721880	+	0	NA	Intergenic	Intergenic	62272	NM_021942	60684		NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S|LGMDR18	trafficking protein particle complex subunit 11	protein-coding
25111	chr10	3959521	3960030	+	0	NA	Intergenic	Intergenic	-31385	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
21119	chr1	203628601	203631100	+	0	NA	intron (NM_001365784, intron 1 of 20)	L2b|LINE|L2	1913	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
210446	chr7	100104601	100104800	+	0	NA	intron (NM_004722, intron 7 of 14)	AluSx1|SINE|Alu	3052	NM_001363671	9179		NM_004722	ENSG00000221838	AP4M1	CPSQ3|MU-4|MU-ARP2|SPG50	adaptor related protein complex 4 subunit mu 1	protein-coding
77079	chr15	78904321	78905080	+	0	NA	Intergenic	AluJb|SINE|Alu	31711	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
87506	chr16	71845501	71846730	+	0	NA	intron (NM_001137675, intron 1 of 2)	CpG	139	NM_001137675	342371		NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1 like	protein-coding
83704	chr16	28491601	28492650	+	0	NA	promoter-TSS (NM_000086)	promoter-TSS (NM_000086)	-43	NM_000086	1201		NM_000086	ENSG00000188603	CLN3	BTN1|BTS|JNCL	CLN3 lysosomal/endosomal transmembrane protein, battenin	protein-coding
4572	chr1	22062321	22062580	+	0	NA	intron (NM_044472, intron 1 of 5)	MamRTE1|LINE|RTE-BovB	9741	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
74366	chr15	58746001	58746400	+	0	NA	intron (NM_001320570, intron 1 of 14)	intron (NM_001320570, intron 1 of 14)	3507	NM_001110	102		NM_001110	ENSG00000137845	ADAM10	AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz	ADAM metallopeptidase domain 10	protein-coding
220663	chr8	101134851	101135230	+	0	NA	Intergenic	AluSq|SINE|Alu	35199	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
113869	chr19	10662651	10662750	+	0	NA	intron (NM_153464, intron 1 of 17)	intron (NM_153464, intron 1 of 17)	8354	NM_001137673	3609		NM_004516	ENSG00000129351	ILF3	CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80	interleukin enhancer binding factor 3	protein-coding
46227	chr11	124402451	124402650	+	0	NA	Intergenic	Intergenic	-3526	NM_001005467	390271		NM_001005467	ENSG00000284609	OR8B3	OR11-311	olfactory receptor family 8 subfamily B member 3	protein-coding
80299	chr16	2264101	2264750	+	0	NA	intron (NM_001286627, intron 1 of 5)	intron (NM_001286627, intron 1 of 5)	2912	NM_001286625	10921		NM_006711	ENSG00000205937	RNPS1	E5.1	RNA binding protein with serine rich domain 1	protein-coding
137911	chr2	200888321	200890450	+	0	NA	promoter-TSS (NM_001142355)	promoter-TSS (NM_001142355)	0	NM_021824	60491		NM_021824	ENSG00000196290	NIF3L1	ALS2CR1|CALS-7|MDS015	NGG1 interacting factor 3 like 1	protein-coding
217762	chr8	31034851	31034950	+	0	NA	intron (NM_000553, intron 1 of 34)	LTR56|LTR|ERV1	1090	NM_000553	7486		NM_000553	ENSG00000165392	WRN	RECQ3|RECQL2|RECQL3	WRN RecQ like helicase	protein-coding
97183	chr17	42676501	42677600	+	0	NA	promoter-TSS (NR_073573)	promoter-TSS (NR_073573)	-56	NR_073573	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
200782	chr6	137877101	137877300	+	0	NA	exon (NM_001270508, exon 6 of 9)	exon (NM_001270508, exon 6 of 9)	-8967	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
215526	chr7	158765151	158765450	+	0	NA	intron (NM_020728, intron 8 of 21)	MIR|SINE|MIR	-60496	NM_001281933	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
229290	chr9	120784821	120785080	+	0	NA	intron (NM_001375888, intron 3 of 7)	intron (NM_001375888, intron 3 of 7)	8466	NM_001375890	26190		NM_012164	ENSG00000119402	FBXW2	FBW2|Fwd2|Md6	F-box and WD repeat domain containing 2	protein-coding
194711	chr6	33744321	33745080	+	0	NA	intron (NM_001142883, intron 1 of 6)	intron (NM_001142883, intron 1 of 6)	2205	NM_054111	117283		NM_054111	ENSG00000161896	IP6K3	IHPK3|INSP6K3	inositol hexakisphosphate kinase 3	protein-coding
221566	chr8	125118251	125119050	+	0	NA	intron (NR_146191, intron 3 of 8)	intron (NR_146191, intron 3 of 8)	26790	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
25818	chr10	11200671	11201300	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	35955	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
76489	chr15	74902771	74902930	+	0	NA	TTS (NM_001289156)	TTS (NM_001289156)	4001	NR_135852	57184		NM_020447	ENSG00000178761	FAM219B	C15orf17	family with sequence similarity 219 member B	protein-coding
128119	chr2	48317071	48318130	+	0	NA	intron (NM_001375452, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	2918	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
172886	chr4	3442571	3442730	+	0	NA	intron (NM_001528, intron 1 of 13)	intron (NM_001528, intron 1 of 13)	682	NM_001297439	3083		NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding
149169	chr21	17817201	17817430	+	0	NA	intron (NM_017447, intron 2 of 4)	intron (NM_017447, intron 2 of 4)	2041	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
28972	chr10	63248971	63249600	+	0	NA	intron (NM_001322252, intron 2 of 24)	AluSx1|SINE|Alu	19938	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
208714	chr7	73307371	73307530	+	0	NA	exon (NM_001168347, exon 4 of 10)	exon (NM_001168347, exon 4 of 10)	1376	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
65852	chr14	55046001	55046200	+	0	NA	3' UTR (NM_080867, exon 2 of 2)	3' UTR (NM_080867, exon 2 of 2)	-5547	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
112087	chr19	5397921	5398180	+	0	NA	Intergenic	Intergenic	-57238	NM_130854	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
131713	chr2	97808271	97808630	+	0	NA	intron (NM_015348, intron 19 of 40)	intron (NM_015348, intron 19 of 40)	75150	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
28301	chr10	46217551	46217850	+	0	NA	Intergenic	Intergenic	51908	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
87348	chr16	70349751	70350330	+	0	NA	intron (NM_018332, intron 1 of 11)	AluJb|SINE|Alu	3137	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
183345	chr5	76790701	76791150	+	0	NA	Intergenic	Intergenic	-28105	NM_005242	2150		NM_005242	ENSG00000164251	F2RL1	GPR11|PAR2	F2R like trypsin receptor 1	protein-coding
52282	chr12	54579471	54580350	+	0	NA	TTS (NM_000924)	TTS (NM_000924)	8749	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
3505	chr1	16044621	16044880	+	0	NA	intron (NM_000085, intron 2 of 19)	intron (NM_000085, intron 2 of 19)	968	NM_000085	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
183870	chr5	87270871	87271050	+	0	NA	intron (NM_022650, intron 1 of 24)	AluSp|SINE|Alu	2023	NM_022650	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
190980	chr6	2991751	2991850	+	0	NA	TTS (NR_026856)	TTS (NR_026856)	3833	NR_026856	401232		NM_207495		LINC01011	-	long intergenic non-protein coding RNA 1011	ncRNA
138783	chr2	216057551	216058600	+	0	NA	intron (NM_018441, intron 4 of 7)	intron (NM_018441, intron 4 of 7)	23734	NM_018441	55825		NM_018441	ENSG00000115425	PECR	DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding
212330	chr7	127394501	127394700	+	0	NA	Intergenic	Intergenic	-1892	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
55428	chr12	104508751	104509300	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	52077	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
201784	chr6	149970651	149971150	+	0	NA	intron (NM_001317089, intron 2 of 2)	intron (NM_001317089, intron 2 of 2)	6957	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
132661	chr2	108744121	108744380	+	0	NA	intron (NM_006267, intron 7 of 28)	AluSx1|SINE|Alu	24768	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
133032	chr2	111970751	111970850	+	0	NA	intron (NM_006343, intron 6 of 18)	(TCC)n|Simple_repeat|Simple_repeat	72193	NM_006343	10461		NM_006343	ENSG00000153208	MERTK	MER|RP38|Tyro12|c-Eyk|c-mer	MER proto-oncogene, tyrosine kinase	protein-coding
135708	chr2	168976001	168976800	+	0	NA	intron (NM_003742, intron 12 of 27)	intron (NM_003742, intron 12 of 27)	54924	NM_003742	8647		NM_003742	ENSG00000073734	ABCB11	ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP	ATP binding cassette subfamily B member 11	protein-coding
85068	chr16	32164871	32165030	+	0	NA	intron (NR_135178, intron 18 of 24)	L1MB5|LINE|L1	23163	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
179841	chr5	486021	486750	+	0	NA	intron (NM_001284351, intron 3 of 16)	intron (NM_001284351, intron 3 of 16)	13149	NR_125375	100288152		NR_125375		SLC9A3-AS1	UC011CLY.2	SLC9A3 antisense RNA 1	ncRNA
110206	chr19	1744821	1745080	+	0	NA	Intergenic	Intergenic	-8556	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
12794	chr1	109790621	109791450	+	0	NA	Intergenic	Intergenic	-27112	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
118552	chr19	36131301	36131780	+	0	NA	Intergenic	AluSx|SINE|Alu	-8526	NM_001003962	826		NM_001749	ENSG00000126247	CAPNS1	CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1|PPH6	calpain small subunit 1	protein-coding
222050	chr8	130264701	130265330	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	31518	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
127848	chr2	45587651	45589000	+	0	NA	intron (NM_018079, intron 4 of 20)	L2|LINE|L2	22942	NM_018079	55133		NM_018079	ENSG00000068784	SRBD1	-	S1 RNA binding domain 1	protein-coding
102504	chr17	75769271	75770900	+	0	NA	Intergenic	AluSx|SINE|Alu	-4893	NM_000154	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
218261	chr8	42179521	42180550	+	0	NA	exon (NM_000930, exon 12 of 14)	exon (NM_000930, exon 12 of 14)	26972	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
5055	chr1	24567851	24568250	+	0	NA	intron (NM_001010980, intron 1 of 3)	intron (NM_001010980, intron 1 of 3)	11963	NM_001010980	400746		NM_001010980	ENSG00000184454	NCMAP	C1orf130|MP11	non-compact myelin associated protein	protein-coding
87702	chr16	74862701	74862950	+	0	NA	Intergenic	Intergenic	-88005	NM_024306	79152		NM_024306	ENSG00000103089	FA2H	FAAH|FAH1|FAXDC1|SCS7|SPG35	fatty acid 2-hydroxylase	protein-coding
117189	chr19	19364371	19365680	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-20818	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
22719	chr1	224185451	224185830	+	0	NA	intron (NM_001321542, intron 1 of 2)	AluSx1|SINE|Alu	1960	NM_001321542	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
75413	chr15	65771821	65772100	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	20333	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
230167	chr9	127774801	127775080	+	0	NA	intron (NM_170600, intron 1 of 11)	AluSq2|SINE|Alu	-3571	NM_001252334	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
100169	chr17	58625721	58625980	+	0	NA	intron (NM_198393, intron 3 of 32)	AluY|SINE|Alu	66195	NM_031272	56155		NM_031272	ENSG00000121101	TEX14	CT113|SPGF23|SgK307	testis expressed 14, intercellular bridge forming factor	protein-coding
54168	chr12	76766671	76766830	+	0	NA	intron (NM_015336, intron 1 of 16)	AluJb|SINE|Alu	2492	NM_001359626	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
54400	chr12	89951221	89952080	+	0	NA	Intergenic	Intergenic	3957	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
156735	chr22	41806351	41806450	+	0	NA	intron (NM_001382346, intron 2 of 7)	AluSc8|SINE|Alu	5721	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
129456	chr2	69564371	69564730	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-44379	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
98976	chr17	48727671	48727830	+	0	NA	intron (NM_006361, intron 1 of 1)	intron (NM_006361, intron 1 of 1)	1000	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
27528	chr10	32313301	32313750	+	0	NA	intron (NR_168508, intron 1 of 12)	L2a|LINE|L2	33633	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
38206	chr11	36392371	36393150	+	0	NA	intron (NM_024841, intron 2 of 9)	THE1D|LTR|ERVL-MaLR	-8237	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
192154	chr6	17156121	17156450	+	0	NA	Intergenic	Intergenic	54235	NM_001190766	401236		NM_001190766	ENSG00000230873	STMND1	-	stathmin domain containing 1	protein-coding
143173	chr20	24145321	24145580	+	0	NA	Intergenic	Intergenic	-54317	NR_040102	400839		NR_040102	ENSG00000230133	LINC01721	-	long intergenic non-protein coding RNA 1721	ncRNA
131614	chr2	96913251	96914630	+	0	NA	intron (NM_001122646, intron 12 of 16)	intron (NM_001122646, intron 12 of 16)	-5166	NR_110209	101927053		NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
208613	chr7	72957551	72957980	+	0	NA	Intergenic	Intergenic	-3002	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
236388	chrX	71104721	71104980	+	0	NA	intron (NR_033212, intron 3 of 5)	intron (NR_033212, intron 3 of 5)	1890	NR_033212	158830		NM_001025265	ENSG00000204165	CXorf65	-	chromosome X open reading frame 65	protein-coding
35223	chr11	825501	826400	+	0	NA	TTS (NM_020376)	TTS (NM_020376)	-1969	NM_001286606	283229		NM_173584	ENSG00000177685	CRACR2B	EFCAB4A	calcium release activated channel regulator 2B	protein-coding
166246	chr3	112298671	112299000	+	0	NA	Intergenic	AluJr|SINE|Alu	-3643	NR_147411	105374042		NR_147411	ENSG00000239482	LOC105374042	-	uncharacterized LOC105374042	ncRNA
132805	chr2	110401201	110401480	+	0	NA	Intergenic	LTR13|LTR|ERVK	-16804	NR_027244	151009		NM_152518		LINC01106	-	long intergenic non-protein coding RNA 1106	ncRNA
160917	chr3	36701051	36701230	+	0	NA	Intergenic	Intergenic	38721	NM_033403	85443		NM_033403	ENSG00000163673	DCLK3	CLR|DCAMKL3|DCDC3C|DCK3	doublecortin like kinase 3	protein-coding
214519	chr7	150501421	150501750	+	0	NA	Intergenic	L1PA6|LINE|L1	-13287	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
59804	chr13	30375471	30375850	+	0	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	-1746	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
217566	chr8	29413451	29413630	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	-62856	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
53611	chr12	68121101	68121830	+	0	NA	Intergenic	L2|LINE|L2	38275	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
212284	chr7	123746001	123746450	+	0	NA	intron (NM_003941, intron 1 of 10)	L2c|LINE|L2	2778	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
54861	chr12	95534371	95534750	+	0	NA	intron (NM_032147, intron 1 of 5)	intron (NM_032147, intron 1 of 5)	13678	NM_001278393	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
194832	chr6	34393901	34394100	+	0	NA	intron (NM_001202470, intron 5 of 8)	intron (NM_001202470, intron 5 of 8)	-1331	NM_006703	11165		NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
200586	chr6	136551671	136552030	+	0	NA	Intergenic	Intergenic	-1031	NM_003980	9053		NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding
215722	chr8	1754021	1754280	+	0	NA	Intergenic	MER83|LTR|ERV1	9184	NR_134302	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
34836	chr11	305971	306500	+	0	NA	Intergenic	MER4D0|LTR|ERV1	-1872	NM_006435	10581		NM_006435	ENSG00000185201	IFITM2	1-8D|DSPA2c	interferon induced transmembrane protein 2	protein-coding
39127	chr11	48171051	48171300	+	0	NA	TTS (NM_002843)	TTS (NM_002843)	-45635	NM_001005470	119765		NM_001005470	ENSG00000175619	OR4B1	OR11-106|OST208	olfactory receptor family 4 subfamily B member 1	protein-coding
201683	chr6	149544121	149544380	+	0	NA	intron (NM_139126, intron 1 of 12)	MLT1K|LTR|ERVL-MaLR	1793	NM_139126	85313		NM_139126	ENSG00000131013	PPIL4	HDCME13P	peptidylprolyl isomerase like 4	protein-coding
146184	chr20	48756771	48757230	+	0	NA	intron (NM_020820, intron 1 of 39)	THE1B|LTR|ERVL-MaLR	70999	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
233939	chrX	2499371	2499530	+	0	NA	intron (NM_001171136, intron 1 of 1)	Charlie1b|DNA|hAT-Charlie	1089	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
103937	chr17	79840501	79841230	+	0	NA	Intergenic	CpG	-1425	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
221762	chr8	127801601	127802000	+	0	NA	intron (NR_003367, intron 1 of 8)	MER33|DNA|hAT-Charlie	5838	NR_031609	100302185		NR_031609	ENSG00000283710	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
204003	chr7	1856801	1857000	+	0	NA	intron (NM_001304524, intron 16 of 16)	intron (NM_001304524, intron 16 of 16)	-12647	NR_039799	100616160		NR_039799	ENSG00000265089	MIR4655	-	microRNA 4655	ncRNA
138684	chr2	213069371	213070080	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	80712	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
88813	chr16	87404371	87404530	+	0	NA	3' UTR (NM_022818, exon 4 of 4)	3' UTR (NM_022818, exon 4 of 4)	12114	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
205405	chr7	16416951	16417250	+	0	NA	intron (NR_160656, intron 1 of 7)	L1PA16|LINE|L1	4438	NM_001101417	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
168853	chr3	152278001	152278300	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-8524	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
102165	chr17	75130501	75132400	+	0	NA	intron (NR_045513, intron 1 of 4)	CpG	292	NR_045513	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
125321	chr2	10774251	10774550	+	0	NA	intron (NM_144583, intron 8 of 12)	intron (NM_144583, intron 8 of 12)	38385	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
67436	chr14	70647821	70648280	+	0	NA	intron (NM_015351, intron 1 of 2)	intron (NM_015351, intron 1 of 2)	6134	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
9083	chr1	44987751	44988400	+	0	NA	Intergenic	AluSx|SINE|Alu	-1353	NM_001166588	8891		NM_020365	ENSG00000070785	EIF2B3	EIF-2B|EIF2Bgamma|VWM3	eukaryotic translation initiation factor 2B subunit gamma	protein-coding
131136	chr2	91500251	91501030	+	0	NA	Intergenic	(TGGC)n|Simple_repeat|Simple_repeat	159309	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
154188	chr22	31341651	31342430	+	0	NA	intron (NM_032051, intron 2 of 2)	intron (NM_032051, intron 2 of 2)	4306	NM_032052	23598		NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ/BTB and AT hook containing zinc finger 1	protein-coding
169776	chr3	172675421	172676080	+	0	NA	intron (NM_001146276, intron 1 of 4)	intron (NM_001146276, intron 1 of 4)	35317	NM_001146276	57552		NM_020792	ENSG00000144959	NCEH1	AADACL1|NCEH	neutral cholesterol ester hydrolase 1	protein-coding
111361	chr19	3689321	3689980	+	0	NA	intron (NM_001300849, intron 1 of 16)	AluSq4|SINE|Alu	10818	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
76037	chr15	72224871	72225030	+	0	NA	intron (NM_001206798, intron 1 of 10)	AluY|SINE|Alu	4961	NM_001206799	5315		NM_002654	ENSG00000067225	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1|p58	pyruvate kinase M1/2	protein-coding
231630	chr9	131588951	131589050	+	0	NA	intron (NM_001377935, intron 19 of 26)	intron (NM_001377935, intron 19 of 26)	43477	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
66233	chr14	61335001	61335400	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	13757	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
11002	chr1	84620621	84621850	+	0	NA	promoter-TSS (NR_125761)	promoter-TSS (NR_125761)	-204	NR_125761	103695366		NR_125761		LINC01461	TCONS_00001552	long intergenic non-protein coding RNA 1461	ncRNA
93218	chr17	17831771	17832430	+	0	NA	intron (NM_001005291, intron 1 of 19)	intron (NM_001005291, intron 1 of 19)	4886	NM_001005291	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
130809	chr2	86987171	86987730	+	0	NA	exon (NM_001024457, exon 20 of 23)	exon (NM_001024457, exon 20 of 23)	34394	NM_001032392	5343		NM_001032392	ENSG00000183281	PLGLB1	PLGL|PLGP1|PRGB|PRP-B	plasminogen like B1	protein-coding
47843	chr12	6609711	6610600	+	0	NA	Intergenic	Intergenic	-2776	NM_001273	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
200807	chr6	137904021	137905650	+	0	NA	Intergenic	Intergenic	-36602	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
16739	chr1	155264321	155264630	+	0	NA	exon (NM_001294339, exon 9 of 12)	exon (NM_001294339, exon 9 of 12)	-2115	NM_005698	10067		NM_005698	ENSG00000116521	SCAMP3	C1orf3	secretory carrier membrane protein 3	protein-coding
99890	chr17	56779551	56780900	+	0	NA	Intergenic	Intergenic	53695	NM_001085430	339210		NM_001085430	ENSG00000214226	C17orf67	-	chromosome 17 open reading frame 67	protein-coding
72124	chr15	28962801	28963200	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	28996	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
95956	chr17	39089301	39089500	+	0	NA	intron (NM_020405, intron 7 of 13)	MLT1O|LTR|ERVL-MaLR	32381	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
186535	chr5	138443401	138444300	+	0	NA	intron (NM_016606, intron 3 of 7)	intron (NM_016606, intron 3 of 7)	4793	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
217598	chr8	29654171	29654530	+	0	NA	Intergenic	Intergenic	93759	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
134307	chr2	135983821	135984280	+	0	NA	intron (NM_001349, intron 1 of 15)	intron (NM_001349, intron 1 of 15)	-1126	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
156869	chr22	42082321	42082580	+	0	NA	intron (NM_033318, intron 2 of 2).3	AluSp|SINE|Alu	2501	NR_146717	91689		NM_033318	ENSG00000183172	SMDT1	C22orf32|DDDD|EMRE	single-pass membrane protein with aspartate rich tail 1	protein-coding
33581	chr10	119498221	119498480	+	0	NA	Intergenic	AluSg|SINE|Alu	38183	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
204309	chr7	2695971	2696530	+	0	NA	intron (NM_001321766, intron 1 of 6)	intron (NM_001321766, intron 1 of 6)	8048	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
176140	chr4	83125451	83126280	+	0	NA	Intergenic	AluSz|SINE|Alu	-11136	NM_016619	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
16568	chr1	154993051	154993550	+	0	NA	promoter-TSS (NM_018655)	promoter-TSS (NM_018655)	-286	NM_018655	55891		NM_018655	ENSG00000163352	LENEP	LEP503	lens epithelial protein	protein-coding
94494	chr17	29289121	29289930	+	0	NA	intron (NM_020772, intron 1 of 3)	AluSq|SINE|Alu	4623	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
177750	chr4	122584551	122584850	+	0	NA	Intergenic	Intergenic	-34283	NR_104126	100996941		NR_104126	ENSG00000227145	IL21-AS1	-	IL21 antisense RNA 1	ncRNA
99865	chr17	56010101	56010300	+	0	NA	Intergenic	MIRc|SINE|MIR	-143275	NM_001365758	162282		NM_153228	ENSG00000153930	ANKFN1	-	ankyrin repeat and fibronectin type III domain containing 1	protein-coding
233751	chrX	1388601	1388800	+	0	NA	intron (NM_001636, intron 2 of 3)	MLT1B|LTR|ERVL-MaLR	3413	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
10346	chr1	64924421	64925730	+	0	NA	intron (NM_001321852, intron 1 of 24)	L1MC1|LINE|L1	41474	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
136218	chr2	174584401	174584780	+	0	NA	intron (NM_001375837, intron 2 of 4)	intron (NM_001375837, intron 2 of 4)	13214	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
39099	chr11	48035371	48035730	+	0	NA	intron (NM_002843, intron 1 of 24)	(T)n|Simple_repeat|Simple_repeat	54991	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
237065	chrX	103533451	103534000	+	0	NA	intron (NR_131237, intron 4 of 5)	intron (NR_131237, intron 4 of 5)	-14236	NM_080879	142684		NM_080879	ENSG00000172476	RAB40A	RAR2|RAR2A	RAB40A, member RAS oncogene family	protein-coding
203278	chr6	169751171	169752480	+	0	NA	promoter-TSS (NR_138070).2	promoter-TSS (NR_138070).2	203	NM_001278532	55780		NM_018341	ENSG00000130023	ERMARD	C6orf70|PVNH6|dJ266L20.3	ER membrane associated RNA degradation	protein-coding
17531	chr1	156777651	156777750	+	0	NA	intron (NM_005973, intron 1 of 6)	intron (NM_005973, intron 1 of 6)	10165	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
48582	chr12	10303251	10303350	+	0	NA	intron (NM_001351060, intron 2 of 8)	MER34C2|LTR|ERV1	-1146	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
234231	chrX	13014951	13015250	+	0	NA	Intergenic	Intergenic	29520	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
108730	chr18	77092301	77093780	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	39743	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
159884	chr3	16883701	16885900	+	0	NA	promoter-TSS (NM_001144382)	promoter-TSS (NM_001144382)	-155	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
68872	chr14	91315301	91316520	+	0	NA	intron (NM_001080414, intron 13 of 29)	intron (NM_001080414, intron 13 of 29)	-62030	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
25952	chr10	11527821	11528530	+	0	NA	intron (NM_014688, intron 2 of 14)	intron (NM_014688, intron 2 of 14)	4105	NM_001080491	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
112314	chr19	5894121	5895180	+	0	NA	TTS (NR_034166)	TTS (NR_034166)	9140	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
152394	chr22	20545121	20545380	+	0	NA	intron (NM_001003891, intron 2 of 17)	AluSz|SINE|Alu	37203	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
48318	chr12	9009871	9010850	+	0	NA	non-coding (NR_137428, exon 4 of 4)	non-coding (NR_137428, exon 4 of 4)	20735	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
76814	chr15	77070121	77071530	+	0	NA	intron (NM_005724, intron 1 of 6)	CpG	284	NM_005724	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
3807	chr1	16741701	16742300	+	0	NA	Intergenic	AluSx|SINE|Alu	1484	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
40745	chr11	64833701	64834100	+	0	NA	intron (NM_017525, intron 21 of 36)	intron (NM_017525, intron 21 of 36)	10753	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
145152	chr20	38835721	38836780	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	30553	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
134665	chr2	144465451	144466030	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-53874	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
38188	chr11	36374301	36374500	+	0	NA	intron (NM_001160167, intron 1 of 8)	L2a|LINE|L2	-1585	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
62597	chr13	100182721	100183180	+	0	NA	intron (NM_001352611, intron 6 of 21)	intron (NM_001352611, intron 6 of 21)	93857	NR_148027	5095		NM_000282	ENSG00000175198	PCCA	-	propionyl-CoA carboxylase subunit alpha	protein-coding
215895	chr8	8063471	8064000	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	25354	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
44577	chr11	108240421	108240700	+	0	NA	intron (NM_000051, intron 5 of 62)	Tigger3b|DNA|TcMar-Tigger	17031	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
74876	chr15	63578121	63578850	+	0	NA	intron (NR_046342, intron 12 of 15)	AluYm1|SINE|Alu	-18902	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
183521	chr5	79633621	79634250	+	0	NA	intron (NM_173797, intron 5 of 15)	AluY|SINE|Alu	21494	NM_001349554	167153		NM_173797	ENSG00000164329	TENT2	APD4|GLD2|PAPD4|TUT2	terminal nucleotidyltransferase 2	protein-coding
75849	chr15	69509051	69509350	+	0	NA	Intergenic	MIR|SINE|MIR	-52520	NR_026979	145837		NR_026979	ENSG00000245750	DRAIC	-	downregulated RNA in cancer, inhibitor of cell invasion and migration	ncRNA
71841	chr15	22221051	22222080	+	0	NA	Intergenic	AluY|SINE|Alu	3764	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
90468	chr17	1386021	1386530	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	13947	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
90100	chr16	90046201	90046600	+	0	NA	intron (NR_027336, intron 2 of 3)	intron (NR_027336, intron 2 of 3)	1225	NR_027335	100130015		NR_027335	ENSG00000290738	URAHP	URAH	urate (hydroxyiso-) hydrolase, pseudogene	pseudo
77565	chr15	84955351	84955730	+	0	NA	intron (NM_001321722, intron 18 of 18)	intron (NM_001321722, intron 18 of 18)	-24927	NM_001243137	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
8374	chr1	40371371	40371630	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-2227	NM_022733	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
207352	chr7	44077401	44078230	+	0	NA	intron (NR_104299, intron 5 of 10)	intron (NR_104299, intron 5 of 10)	-4382	NR_106897	102465504		NR_106897	ENSG00000283969	MIR6838	hsa-mir-6838	microRNA 6838	ncRNA
64887	chr14	35385471	35385950	+	0	NA	Intergenic	(AGGG)n|Simple_repeat|Simple_repeat	19039	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
84305	chr16	30091631	30093080	+	0	NA	promoter-TSS (NM_004608)	promoter-TSS (NM_004608)	-431	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
71148	chr14	105011071	105011600	+	0	NA	exon (NM_145701, exon 2 of 3)	exon (NM_145701, exon 2 of 3)	9748	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
166279	chr3	112491051	112491530	+	0	NA	intron (NM_001085357, intron 1 of 3)	intron (NM_001085357, intron 1 of 3)	8182	NM_181780	151888		NM_181780	ENSG00000186265	BTLA	BTLA1|CD272	B and T lymphocyte associated	protein-coding
38881	chr11	47378251	47378780	+	0	NA	promoter-TSS (NM_001080547)	promoter-TSS (NM_001080547)	32	NM_003120	6688		NM_003120	ENSG00000066336	SPI1	AGM10|OF|PU.1|SFPI1|SPI-1|SPI-A	Spi-1 proto-oncogene	protein-coding
163217	chr3	50249051	50249880	+	0	NA	intron (NM_001166425, intron 1 of 8)	intron (NM_001166425, intron 1 of 8)	2555	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
193334	chr6	30200851	30201150	+	0	NA	intron (NM_003449, intron 3 of 9).3	intron (NM_003449, intron 3 of 9).3	12406	NM_003449	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
193001	chr6	28161421	28162280	+	0	NA	promoter-TSS (NR_103448)	promoter-TSS (NR_103448)	89	NR_103448	651302		NM_001145129	ENSG00000226314	ZKSCAN8P1	ZNF192P1|ZNF389|ZNF389P|dJ265C24.4	ZKSCAN8 pseudogene 1	pseudo
100237	chr17	59349021	59349280	+	0	NA	intron (NM_001005404, intron 1 of 4)	AluYc|SINE|Alu	-16933	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA
88449	chr16	84949521	84949780	+	0	NA	Intergenic	MIRb|SINE|MIR	61885	NM_017740	55625		NM_017740	ENSG00000153786	ZDHHC7	DHHC7|SERZ-B|SERZ1|ZNF370	zinc finger DHHC-type palmitoyltransferase 7	protein-coding
230239	chr9	127879371	127879880	+	0	NA	promoter-TSS (NM_001318121)	promoter-TSS (NM_001318121)	-4	NM_001318121	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
77590	chr15	85234821	85235400	+	0	NA	promoter-TSS (NR_158179)	promoter-TSS (NR_158179)	-315	NR_160936	101929479		NR_158179		LOC101929479	-	golgin A2 pseudogene	pseudo
32045	chr10	101039351	101040330	+	0	NA	non-coding (NR_157572, exon 12 of 12)	non-coding (NR_157572, exon 12 of 12)	8601	NM_030971	81855		NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3|SLC56A3	sideroflexin 3	protein-coding
201298	chr6	144342821	144343200	+	0	NA	intron (NM_007124, intron 1 of 73)	MIRb|SINE|MIR	51273	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
155583	chr22	38748071	38749180	+	0	NA	intron (NM_001199580, intron 8 of 18)	intron (NM_001199580, intron 8 of 18)	6841	NM_001199580	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
108366	chr18	68660201	68660680	+	0	NA	Intergenic	MER58C|DNA|hAT-Charlie	54668	NM_001350517	54495		NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
31920	chr10	100518671	100520250	+	0	NA	intron (NM_015490, intron 1 of 25)	CpG	401	NM_015490	25956		NM_015490	ENSG00000075826	SEC31B	SEC31B-1|SEC31L2	SEC31 homolog B, COPII coat complex component	protein-coding
43882	chr11	88343051	88343150	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-5364	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
200301	chr6	132822651	132823580	+	0	NA	Intergenic	Intergenic	5896	NR_002436	594839		NR_002436	ENSG00000200534	SNORA33	ACA33	small nucleolar RNA, H/ACA box 33	snoRNA
158508	chr3	3128451	3128550	+	0	NA	intron (NR_159937, intron 1 of 9)	AluSz|SINE|Alu	1560	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
51508	chr12	52153151	52153550	+	0	NA	Intergenic	Intergenic	38664	NM_001081492	144501		NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
125827	chr2	24354121	24354750	+	0	NA	intron (NM_147152, intron 1 of 29)	intron (NM_147152, intron 1 of 29)	6101	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
213150	chr7	131510621	131511080	+	0	NA	exon (NM_001018111, exon 2 of 9)	exon (NM_001018111, exon 2 of 9)	45778	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
200034	chr6	129695601	129696050	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	14352	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
186902	chr5	139576951	139578130	+	0	NA	intron (NM_181838, intron 2 of 7)	AluSq2|SINE|Alu	16201	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
111867	chr19	4642821	4643380	+	0	NA	intron (NM_001167942, intron 1 of 1)	AluSx|SINE|Alu	3083	NM_001167942	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
113656	chr19	10377371	10377800	+	0	NA	intron (NM_001385207, intron 3 of 24)	(GGAT)n|Simple_repeat|Simple_repeat	2987	NM_001385207	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
141342	chr2	240584471	240585080	+	0	NA	non-coding (NR_103792, exon 1 of 1)	non-coding (NR_103792, exon 1 of 1)	1541	NR_103792	101752400		NR_103792	ENSG00000260942	CAPN10-DT	CAPN10-AS1|locus959	CAPN10 divergent transcript	ncRNA
172550	chr4	2396801	2397000	+	0	NA	intron (NM_020972, intron 1 of 12)	L2|LINE|L2	21745	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
25617	chr10	8073801	8074280	+	0	NA	3' UTR (NM_002051, exon 6 of 6)	3' UTR (NM_002051, exon 6 of 6)	19352	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
35706	chr11	1929721	1929980	+	0	NA	intron (NM_001363561, intron 9 of 16)	intron (NM_001363561, intron 9 of 16)	7019	NM_001367843	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
123187	chr19	52524971	52525330	+	0	NA	Intergenic	LTR24|LTR|ERV1	-2506	NM_001321425	388558		NM_001039886	ENSG00000198482	ZNF808	-	zinc finger protein 808	protein-coding
38723	chr11	46683771	46684130	+	0	NA	intron (NM_004308, intron 4 of 12)	intron (NM_004308, intron 4 of 12)	16669	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
63572	chr14	20453501	20453750	+	0	NA	intron (NM_017807, intron 1 of 10)	AluSp|SINE|Alu	1187	NM_017807	55644		NM_017807	ENSG00000092094	OSGEP	GAMOS3|GCPL1|KAE1|OSGEP1|PRSMG1|TCS3	O-sialoglycoprotein endopeptidase	protein-coding
193280	chr6	30008251	30008350	+	0	NA	non-coding (NR_024240, exon 4 of 7)	non-coding (NR_024240, exon 4 of 7)	2329	NR_024240	3137		NR_024240	ENSG00000290574	HLA-J	CDA12|D6S203|HLA-59|HLA-CDA12	major histocompatibility complex, class I, J (pseudogene)	pseudo
149237	chr21	25573701	25574530	+	0	NA	TTS (NR_030784)	TTS (NR_030784)	135	NR_030784	406947		NR_030784	ENSG00000283904	MIR155	MIRN155|miRNA155|mir-155	microRNA 155	ncRNA
122429	chr19	49465671	49466430	+	0	NA	intron (NM_001145396, intron 12 of 15)	intron (NM_001145396, intron 12 of 15)	-8165	NM_001204502	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
19986	chr1	185042471	185042630	+	0	NA	Intergenic	Intergenic	-3008	NM_007212	6045		NM_007212	ENSG00000121481	RNF2	BAP-1|BAP1|DING|HIPI3|LUSYAM|RING1B|RING2	ring finger protein 2	protein-coding
56062	chr12	110566251	110566750	+	0	NA	intron (NM_139283, intron 1 of 5)	MIRb|SINE|MIR	16818	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
186652	chr5	138570471	138570630	+	0	NA	intron (NM_004134, intron 4 of 16)	AluSx1|SINE|Alu	4851	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
86422	chr16	66871951	66872050	+	0	NA	Intergenic	Intergenic	-8515	NM_001329931	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
134801	chr2	148018971	148019330	+	0	NA	intron (NM_001190879, intron 1 of 14)	intron (NM_001190879, intron 1 of 14)	1587	NM_001374272	5000		NM_002552	ENSG00000115947	ORC4	ORC4L|ORC4P	origin recognition complex subunit 4	protein-coding
199968	chr6	127969321	127970100	+	0	NA	3' UTR (NM_002844, exon 30 of 30)	3' UTR (NM_002844, exon 30 of 30)	-51079	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
148927	chr21	9248171	9248630	+	0	NA	Intergenic	Intergenic	-118639	NR_038329	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
212798	chr7	130206371	130206530	+	0	NA	Intergenic	Intergenic	-1044	NR_156699	84928		NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding
113906	chr19	10691801	10692630	+	0	NA	3' UTR (NM_017620, exon 20 of 20)	3' UTR (NM_017620, exon 20 of 20)	-9224	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
200978	chr6	139367921	139368580	+	0	NA	Intergenic	Intergenic	5963	NM_001168389	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
7803	chr1	36255401	36255600	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluSz|SINE|Alu	31057	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
211109	chr7	102511401	102512300	+	0	NA	intron (NM_001367767, intron 2 of 20)	intron (NM_001367767, intron 2 of 20)	5927	NM_001277335	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
39329	chr11	59158151	59158790	+	0	NA	Intergenic	Intergenic	-12960	NM_001300727	23220		NM_015177	ENSG00000110042	DTX4	RNF155	deltex E3 ubiquitin ligase 4	protein-coding
20087	chr1	186381451	186381730	+	0	NA	intron (NM_001164245, intron 2 of 12)	AluYe5|SINE|Alu	5752	NM_017847	54953		NM_017847	ENSG00000157181	ODR4	C1orf27|TTG1|odr-4	odr-4 GPCR localization factor homolog	protein-coding
108398	chr18	69891421	69891680	+	0	NA	intron (NM_006566, intron 4 of 6)	L1M3|LINE|L1	56323	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
239403	chrY	23596651	23596830	+	0	NA	Intergenic	L1PA10|LINE|L1	344882	NR_002176	474148		NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis expressed transcript, Y-linked 3B	ncRNA
210511	chr7	100210121	100210380	+	0	NA	non-coding (NR_028038, exon 7 of 7)	non-coding (NR_028038, exon 7 of 7)	-8998	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
100010	chr17	57879821	57880680	+	0	NA	intron (NM_001292025, intron 2 of 10)	intron (NM_001292025, intron 2 of 10)	23139	NM_001292025	404093		NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
107953	chr18	58297021	58297520	+	0	NA	intron (NM_001243960, intron 5 of 28)	intron (NM_001243960, intron 5 of 28)	75699	NM_001144966	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
163030	chr3	49810321	49810580	+	0	NA	intron (NM_003335, intron 12 of 23)	intron (NM_003335, intron 12 of 23)	3503	NM_003335	7318		NM_003335	ENSG00000182179	UBA7	D8|UBA1B|UBE1L|UBE2|UBE7	ubiquitin like modifier activating enzyme 7	protein-coding
196544	chr6	44062051	44062350	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	12452	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
125545	chr2	15311371	15311930	+	0	NA	intron (NR_052013, intron 38 of 50)	intron (NR_052013, intron 38 of 50)	249684	NM_015909	51594		NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	NBAS subunit of NRZ tethering complex	protein-coding
210836	chr7	100969801	100970200	+	0	NA	intron (NM_001164462, intron 1 of 11)	intron (NM_001164462, intron 1 of 11)	377	NM_001164462	10071		NM_001164462	ENSG00000205277	MUC12	MUC-11|MUC-12|MUC11	mucin 12, cell surface associated	protein-coding
177882	chr4	128813951	128814300	+	0	NA	intron (NM_001287443, intron 1 of 10)	intron (NM_001287443, intron 1 of 10)	2281	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
188708	chr5	157310071	157310230	+	0	NA	intron (NM_014376, intron 10 of 30)	intron (NM_014376, intron 10 of 30)	35527	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
141193	chr2	239315221	239315930	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	10113	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
206694	chr7	36506721	36507050	+	0	NA	Intergenic	AluJo|SINE|Alu	93235	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
104161	chr17	80397301	80397700	+	0	NA	3' UTR (NM_001256071, exon 68 of 68)	3' UTR (NM_001256071, exon 68 of 68)	-17667	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
97144	chr17	42560151	42560450	+	0	NA	Intergenic	L2a|LINE|L2	-1848	NM_001042532	80347		NM_025233	ENSG00000068120	COASY	DPCK|NBIA6|NBP|PCH12|PPAT|UKR1|pOV-2	Coenzyme A synthase	protein-coding
185783	chr5	132407421	132407880	+	0	NA	Intergenic	LTR16B1|LTR|ERVL	-3279	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
212766	chr7	129950501	129951030	+	0	NA	intron (NM_001202498, intron 1 of 6)	intron (NM_001202498, intron 1 of 6)	2195	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
107603	chr18	48916371	48916730	+	0	NA	Intergenic	AluSq2|SINE|Alu	26257	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
120425	chr19	44002171	44003420	+	0	NA	promoter-TSS (NR_110727)	promoter-TSS (NR_110727)	75	NR_110727	101928063		NR_110727	ENSG00000266921	ZNF230-DT	-	ZNF230 divergent transcript	ncRNA
13437	chr1	114342201	114343250	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	168478	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
199996	chr6	128259701	128260450	+	0	NA	intron (NM_001291983, intron 2 of 18)	intron (NM_001291983, intron 2 of 18)	232210	NR_125849	101928140		NR_125849		PTPRK-AS1	-	PTPRK antisense RNA 1	ncRNA
55646	chr12	107178601	107179480	+	0	NA	Intergenic	Intergenic	-85491	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
187394	chr5	141884801	141885000	+	0	NA	Intergenic	Intergenic	-6490	NM_002587	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
199640	chr6	121689151	121689250	+	0	NA	Intergenic	Intergenic	253554	NM_000165	2697		NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding
24987	chr10	3095401	3096400	+	0	NA	intron (NM_001345944, intron 2 of 21)	intron (NM_001345944, intron 2 of 21)	-8709	NM_001323074	5214		NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
54679	chr12	93402901	93403730	+	0	NA	3' UTR (NM_199040, exon 5 of 5)	3' UTR (NM_199040, exon 5 of 5)	24737	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
13955	chr1	120356201	120356500	+	0	NA	Intergenic	Intergenic	-58677	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
85994	chr16	57461021	57461280	+	0	NA	3' UTR (NM_020312, exon 9 of 9)	3' UTR (NM_020312, exon 9 of 9)	-1529	NM_032940	5432		NM_002694	ENSG00000102978	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	RNA polymerase II subunit C	protein-coding
149010	chr21	14531871	14532380	+	0	NA	intron (NM_001286523, intron 1 of 8)	intron (NM_001286523, intron 1 of 8)	14190	NM_022136	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
171232	chr3	195780101	195780600	+	0	NA	exon (NM_001322468, exon 15 of 42)	exon (NM_001322468, exon 15 of 42)	31579	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
47419	chr12	3041501	3041880	+	0	NA	Intergenic	(CCTCCCTG)n|Simple_repeat|Simple_repeat	-35665	NM_001168320	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
37487	chr11	18397621	18397950	+	0	NA	intron (NR_028500, intron 2 of 6)	AluSc8|SINE|Alu	1519	NM_001165414	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
222444	chr8	135876101	135876300	+	0	NA	Intergenic	L1HS|LINE|L1	418744	NM_006558	10656		NM_006558	ENSG00000131773	KHDRBS3	Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile	KH RNA binding domain containing, signal transduction associated 3	protein-coding
143720	chr20	32281821	32282350	+	0	NA	intron (NM_004798, intron 1 of 8)	L2a|LINE|L2	4434	NM_004798	9371		NM_004798	ENSG00000101350	KIF3B	FLA8|HH0048|KLP-11|OTSC12|RP89	kinesin family member 3B	protein-coding
84456	chr16	30429151	30430600	+	0	NA	promoter-TSS (NR_134471)	promoter-TSS (NR_134471)	-75	NR_134471	79077		NM_024096	ENSG00000179958	DCTPP1	CDA03|RS21C6|XTP3TPA	dCTP pyrophosphatase 1	protein-coding
179347	chr4	183097021	183097280	+	0	NA	non-coding (NR_024008, exon 1 of 1)	non-coding (NR_024008, exon 1 of 1)	2049	NR_024008	152641		NM_153008	ENSG00000251359	WWC2-AS2	C4orf38	WWC2 antisense RNA 2	ncRNA
111438	chr19	3805951	3806330	+	0	NA	intron (NM_015174, intron 18 of 18)	CpG	-4341	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
50194	chr12	46182771	46182930	+	0	NA	TTS (NM_001077484)	TTS (NM_001077484)	83666	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
118635	chr19	37289571	37289730	+	0	NA	Intergenic	SST1|Satellite|centr	-20640	NR_029390	284412		NR_029390		LOC284412	-	Putative uncharacterized protein PP6455	ncRNA
45962	chr11	121448351	121449750	+	0	NA	Intergenic	Intergenic	-3264	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
153721	chr22	29295771	29295930	+	0	NA	intron (NM_001163286, intron 10 of 15)	MamRep137|DNA|TcMar-Tigger	-11173	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
181890	chr5	54528301	54528750	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	10766	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
210497	chr7	100173821	100174430	+	0	NA	intron (NM_152742, intron 4 of 9)	intron (NM_152742, intron 4 of 9)	3256	NM_152742	221914		NM_152742	ENSG00000213420	GPC2	-	glypican 2	protein-coding
107704	chr18	49561401	49562550	+	0	NA	promoter-TSS (NM_001308006)	promoter-TSS (NM_001308006)	-82	NM_001308006	9388		NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding
232235	chr9	134383971	134384330	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	4739	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
119091	chr19	39264771	39265780	+	0	NA	Intergenic	CpG	-3121	NM_172138	282616		NM_172138	ENSG00000183709	IFNL2	IFNL2a|IFNL3a|IL-28A|IL28A	interferon lambda 2	protein-coding
178933	chr4	158873901	158874500	+	0	NA	intron (NM_001366843, intron 15 of 17)	MIRb|SINE|MIR	68361	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
159011	chr3	10438601	10438800	+	0	NA	intron (NM_001353564, intron 3 of 20)	intron (NM_001353564, intron 3 of 20)	-44138	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
66315	chr14	61413721	61414350	+	0	NA	intron (NM_006255, intron 2 of 13)	L2|LINE|L2	92592	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
201266	chr6	144179551	144180130	+	0	NA	intron (NM_003764, intron 1 of 1)	intron (NM_003764, intron 1 of 1)	29323	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
185684	chr5	131793851	131794150	+	0	NA	intron (NM_133372, intron 1 of 17)	L1M3|LINE|L1	3017	NM_001008738	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
36077	chr11	2989701	2990000	+	0	NA	intron (NM_001369381, intron 1 of 15)	intron (NM_001369381, intron 1 of 15)	1253	NM_001369379	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
209590	chr7	77539571	77539730	+	0	NA	intron (NM_001131008, intron 1 of 17)	AluSz|SINE|Alu	1607	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
83513	chr16	27449221	27450550	+	0	NA	3' UTR (NM_181079, exon 10 of 10)	3' UTR (NM_181079, exon 10 of 10)	3508	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
206793	chr7	36786471	36787050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-62211	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
179223	chr4	173528651	173529730	+	0	NA	exon (NM_021973, exon 1 of 2)	exon (NM_021973, exon 1 of 2)	590	NR_136197	79804		NR_003679	ENSG00000237125	HAND2-AS1	DEIN|NBLA00301|UPH	HAND2 antisense RNA 1	ncRNA
53040	chr12	57615551	57616230	+	0	NA	exon (NM_001347933, exon 12 of 14)	exon (NM_001347933, exon 12 of 14)	-3637	NR_166678	65012		NM_133489	ENSG00000293429	SLC26A10P	SLC26A10	solute carrier family 26 member 10, pseudogene	pseudo
169749	chr3	172521621	172522480	+	0	NA	intron (NM_001190943, intron 1 of 1)	L1PA8|LINE|L1	1380	NM_001190943	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
23392	chr1	228208551	228208900	+	0	NA	intron (NM_052843, intron 1 of 80)	intron (NM_052843, intron 1 of 80)	595	NM_001098623	84033		NM_052843	ENSG00000154358	OBSCN	ARHGEF30|RHABDO1|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding
233828	chrX	1488301	1488800	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-34788	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
50660	chr12	48821071	48821530	+	0	NA	intron (NM_001206915, intron 1 of 11)	AluJo|SINE|Alu	2804	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
53531	chr12	67184751	67184860	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-84553	NM_001329674	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
22668	chr1	223790321	223790780	+	0	NA	intron (NM_001031685, intron 15 of 17)	AluSz6|SINE|Alu	55397	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
156619	chr22	41586101	41586300	+	0	NA	intron (NM_002676, intron 1 of 7)	intron (NM_002676, intron 1 of 7)	3640	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
79935	chr16	1748101	1748300	+	0	NA	intron (NM_001318852, intron 6 of 31)	intron (NM_001318852, intron 6 of 31)	13215	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
74689	chr15	62128901	62129180	+	0	NA	Intergenic	Intergenic	36245	NM_001007595	388125		NM_001007595	ENSG00000205502	C2CD4B	FAM148B|NLF2	C2 calcium dependent domain containing 4B	protein-coding
33566	chr10	119383371	119383750	+	0	NA	intron (NM_005308, intron 3 of 15)	L1MC5|LINE|L1	5588	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
37764	chr11	32092621	32092950	+	0	NA	intron (NM_002901, intron 1 of 5)	intron (NM_002901, intron 1 of 5)	1711	NM_002901	5954		NM_002901	ENSG00000049449	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1	protein-coding
116699	chr19	18434451	18434550	+	0	NA	TTS (NM_001009998)	TTS (NM_001009998)	2809	NM_001253389	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
190756	chr6	446371	448230	+	0	NA	Intergenic	Intergenic	55548	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
153677	chr22	29069201	29069600	+	0	NA	Intergenic	Intergenic	-3635	NM_001039570	83999		NM_032045	ENSG00000183762	KREMEN1	ECTD13|KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
145384	chr20	41233471	41233630	+	0	NA	intron (NM_001384324, intron 2 of 4)	intron (NM_001384324, intron 2 of 4)	38706	NM_001384324	23051		NM_015035	ENSG00000174306	ZHX3	TIX1	zinc fingers and homeoboxes 3	protein-coding
72752	chr15	39624671	39625480	+	0	NA	intron (NM_001324338, intron 10 of 11)	intron (NM_001324338, intron 10 of 11)	43996	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
170477	chr3	185941471	185941630	+	0	NA	Intergenic	AluY|SINE|Alu	-3536	NM_004593	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
50695	chr12	48915871	48916230	+	0	NA	intron (NM_033124, intron 3 of 7)	SVA_D|Retroposon|SVA	8938	NM_001143781	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
7096	chr1	32076551	32076850	+	0	NA	intron (NM_001319679, intron 3 of 6)	intron (NM_001319679, intron 3 of 6)	3761	NM_001319678	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
6942	chr1	31745451	31746350	+	0	NA	intron (NM_001294336, intron 4 of 31)	intron (NM_001294336, intron 4 of 31)	12835	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
120053	chr19	42034221	42035230	+	0	NA	intron (NM_001301030, intron 11 of 18)	intron (NM_001301030, intron 11 of 18)	31080	NM_002088	2901		NM_002088	ENSG00000105737	GRIK5	EAA2|GRIK2|GluK5|KA2	glutamate ionotropic receptor kainate type subunit 5	protein-coding
48296	chr12	8960271	8960900	+	0	NA	intron (NR_137427, intron 1 of 2)	intron (NR_137427, intron 1 of 2)	10541	NM_001329103	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
147694	chr20	62321181	62322500	+	0	NA	intron (NM_005560, intron 48 of 79)	intron (NM_005560, intron 48 of 79)	10717	NR_039915	100616340		NR_039915	ENSG00000284074	MIR4758	-	microRNA 4758	ncRNA
239291	chrY	14340271	14341150	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-181906	NM_001365591	22829		NM_014893	ENSG00000165246	NLGN4Y	HNL4Y	neuroligin 4 Y-linked	protein-coding
112035	chr19	5125021	5125280	+	0	NA	intron (NM_015015, intron 11 of 22)	AluJr|SINE|Alu	156037	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
122355	chr19	49336851	49337530	+	0	NA	exon (NM_001040031, exon 4 of 8)	exon (NM_001040031, exon 4 of 8)	1784	NM_001040031	951		NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
127910	chr2	46302771	46302930	+	0	NA	intron (NM_001430, intron 1 of 15)	AluSx3|SINE|Alu	5443	NM_001430	2034		NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
238103	chrX	136617151	136618000	+	0	NA	Intergenic	Intergenic	-21968	NR_038462	100128420		NR_038461	ENSG00000233093	LINC00892	-	long intergenic non-protein coding RNA 892	ncRNA
110333	chr19	1869471	1870250	+	0	NA	Intergenic	AluJr|SINE|Alu	-6281	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
101104	chr17	64985701	64987050	+	0	NA	Intergenic	Intergenic	-10790	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
65647	chr14	52324051	52324430	+	0	NA	intron (NM_000956, intron 1 of 1)	MER74B|LTR|ERVL	9928	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
227078	chr9	85289671	85290630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	451804	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
235188	chrX	41336051	41336680	+	0	NA	intron (NM_001193417, intron 1 of 15)	intron (NM_001193417, intron 1 of 15)	2199	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
93396	chr17	18320671	18320900	+	0	NA	intron (NM_144775, intron 1 of 1)	intron (NM_144775, intron 1 of 1)	5492	NM_144775	140775		NM_144775	ENSG00000176994	SMCR8	DENND8A	SMCR8-C9orf72 complex subunit	protein-coding
49663	chr12	29148721	29150150	+	0	NA	intron (NM_001271783, intron 1 of 11)	CpG	157	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
66488	chr14	61663591	61664100	+	0	NA	Intergenic	Intergenic	-31668	NM_181054	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
230494	chr9	128245671	128246680	+	0	NA	intron (NM_001374269, intron 15 of 21)	intron (NM_001374269, intron 15 of 21)	-1145	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
217709	chr8	30139171	30139330	+	0	NA	TTS (NM_001128208)	TTS (NM_001128208)	5415	NM_001100916	619373		NM_001100916	ENSG00000177669	MBOAT4	FKSG89|GOAT|OACT4	membrane bound O-acyltransferase domain containing 4	protein-coding
113802	chr19	10574171	10574330	+	0	NA	intron (NM_001300887, intron 11 of 11)	AluSz|SINE|Alu	-5271	NM_079421	1032		NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
145230	chr20	38921171	38921500	+	0	NA	3' UTR (NM_015568, exon 11 of 11)	3' UTR (NM_015568, exon 11 of 11)	-5082	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
103985	chr17	80024171	80024930	+	0	NA	intron (NM_019020, intron 1 of 11)	(CA)n|Simple_repeat|Simple_repeat	11322	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
191554	chr6	11710001	11710600	+	0	NA	Intergenic	LTR64|LTR|ERV1	68503	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
155231	chr22	37914721	37914980	+	0	NA	intron (NM_033386, intron 3 of 15)	AluJb|SINE|Alu	8553	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
79457	chr16	727801	729450	+	0	NA	intron (NM_001365282, intron 6 of 7)	CpG-8887	1519	NM_032304	84264		NM_032304	ENSG00000103253	HAGHL	-	hydroxyacylglutathione hydrolase like	protein-coding
22377	chr1	218328571	218328730	+	0	NA	intron (NM_016052, intron 4 of 4)	AluY|SINE|Alu	-16634	NR_138148	7042		NM_003238	ENSG00000092969	TGFB2	G-TSF|LDS4|TGF-beta2	transforming growth factor beta 2	protein-coding
97645	chr17	44195901	44196750	+	0	NA	intron (NM_001382310, intron 6 of 12)	intron (NM_001382310, intron 6 of 12)	3044	NM_001382315	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
156787	chr22	41905871	41906350	+	0	NA	non-coding (NR_103834, exon 22 of 22)	non-coding (NR_103834, exon 22 of 22)	5166	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
7406	chr1	32941101	32941500	+	0	NA	intron (NM_001127361, intron 7 of 8)	AluSg|SINE|Alu	23509	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
15025	chr1	148333851	148335580	+	0	NA	promoter-TSS (NR_049810)	promoter-TSS (NR_049810)	-161	NR_049810	100847044		NR_049810	ENSG00000283676	MIR5087	-	microRNA 5087	ncRNA
185061	chr5	116075371	116075730	+	0	NA	Intergenic	LTR52|LTR|ERVL	-9475	NM_016144	51397		NM_016144	ENSG00000145781	COMMD10	PTD002	COMM domain containing 10	protein-coding
186806	chr5	139380201	139380650	+	0	NA	intron (NM_005847, intron 5 of 14)	intron (NM_005847, intron 5 of 14)	2872	NM_005847	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
147793	chr20	62626071	62626630	+	0	NA	Intergenic	Intergenic	-16153	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
67078	chr14	68111301	68111700	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	287908	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
157463	chr22	45271351	45271650	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-13449	NM_006953	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
129820	chr2	72144671	72145650	+	0	NA	intron (NM_019885, intron 1 of 5)	CpG	2702	NM_001277742	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
77462	chr15	84426421	84427290	+	0	NA	TTS (NR_120379)	TTS (NR_120379)	4237	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
177986	chr4	139176051	139177500	+	0	NA	intron (NM_001371324, intron 1 of 10)	CpG	443	NM_001371339	1998		NM_006874	ENSG00000109381	ELF2	EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2	E74 like ETS transcription factor 2	protein-coding
186587	chr5	138503621	138505100	+	0	NA	Intergenic	AluSx1|SINE|Alu	37351	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
527	chr1	1223601	1224300	+	0	NA	exon (NM_016176, exon 3 of 7)	exon (NM_016176, exon 3 of 7)	8051	NM_016176	51150		NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
32454	chr10	102636351	102636450	+	0	NA	Intergenic	AluSx|SINE|Alu	-8079	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
132536	chr2	106164101	106164580	+	0	NA	intron (NR_045607, intron 2 of 13)	intron (NR_045607, intron 2 of 13)	-3703	NM_001377509	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
101565	chr17	68040871	68041030	+	0	NA	intron (NM_002266, intron 4 of 10)	FLAM_C|SINE|Alu	4990	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
93158	chr17	17766221	17766880	+	0	NA	promoter-TSS (NR_130894)	promoter-TSS (NR_130894)	-248	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
80789	chr16	3237051	3237450	+	0	NA	Intergenic	L1ME3G|LINE|L1	-2092	NM_198087	7752		NM_003454	ENSG00000010539	ZNF200	-	zinc finger protein 200	protein-coding
132811	chr2	110534471	110534830	+	0	NA	exon (NM_005054, exon 20 of 23)	exon (NM_005054, exon 20 of 23)	42250	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
199892	chr6	127843751	127844050	+	0	NA	intron (NM_001318531, intron 2 of 6).2	MLT1F|LTR|ERVL-MaLR	11288	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
146352	chr20	49251471	49252030	+	0	NA	intron (NM_021035, intron 12 of 13)	AluJr|SINE|Alu	26307	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
17611	chr1	156919221	156919500	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-1272	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
26345	chr10	15238471	15238950	+	0	NA	intron (NM_001010924, intron 5 of 7)	intron (NM_001010924, intron 5 of 7)	-70017	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
192382	chr6	24717221	24717480	+	0	NA	intron (NM_030939, intron 1 of 4)	intron (NM_030939, intron 1 of 4)	1804	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
181642	chr5	49661021	49661800	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	779878	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
71911	chr15	22769001	22769400	+	0	NA	intron (NM_001365371, intron 10 of 12)	(CTC)n|Simple_repeat|Simple_repeat	6932	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
89877	chr16	89645621	89647000	+	0	NA	intron (NM_002768, intron 6 of 6)	intron (NM_002768, intron 6 of 6)	11398	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
49009	chr12	14222351	14222450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-143232	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
75919	chr15	70094601	70095200	+	0	NA	promoter-TSS (NM_001282982)	promoter-TSS (NM_001282982)	-111	NM_001282982	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
92331	chr17	8150431	8152000	+	0	NA	intron (NM_002616, intron 1 of 22)	intron (NM_002616, intron 1 of 22)	1189	NM_002616	5187		NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian regulator 1	protein-coding
93851	chr17	21000721	21001180	+	0	NA	3' UTR (NM_015276, exon 13 of 13)	3' UTR (NM_015276, exon 13 of 13)	42061	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
172778	chr4	2935801	2936750	+	0	NA	non-coding (NR_015453, exon 1 of 4)	non-coding (NR_015453, exon 1 of 4)	729	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
210932	chr7	101239901	101240100	+	0	NA	intron (NM_016068, intron 4 of 4)	intron (NM_016068, intron 4 of 4)	-1180	NM_001185080	24146		NM_014343	ENSG00000106404	CLDN15	-	claudin 15	protein-coding
205411	chr7	16564421	16565300	+	0	NA	intron (NM_001195280, intron 5 of 8)	intron (NM_001195280, intron 5 of 8)	38035	NM_001195280	100506049		NM_001195280	ENSG00000205858	LRRC72	CFAP279|FAP279	leucine rich repeat containing 72	protein-coding
32232	chr10	101827901	101828530	+	0	NA	non-coding (NR_045118, exon 3 of 3)	non-coding (NR_045118, exon 3 of 3)	9147	NR_045118	100289509		NR_045118		KCNIP2-AS1	-	KCNIP2 antisense RNA 1	ncRNA
175875	chr4	80035201	80035730	+	0	NA	intron (NM_001145794, intron 8 of 15)	intron (NM_001145794, intron 8 of 15)	37764	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
69760	chr14	99138971	99139130	+	0	NA	Intergenic	Intergenic	133147	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
124857	chr2	8076401	8076900	+	0	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	-99836	NR_015405	339788		NR_015405	ENSG00000235665	LINC00298	-	long intergenic non-protein coding RNA 298	ncRNA
175340	chr4	68436671	68436900	+	0	NA	Intergenic	(TTTCT)n|Simple_repeat|Simple_repeat	-10678	NM_014058	28983		NM_014058	ENSG00000087128	TMPRSS11E	DESC1|TMPRSS11E2	transmembrane serine protease 11E	protein-coding
137360	chr2	196160001	196160600	+	0	NA	intron (NM_004226, intron 2 of 7)	intron (NM_004226, intron 2 of 7)	11278	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
217631	chr8	30056451	30057180	+	0	NA	Intergenic	LTR16D2|LTR|ERVL	26249	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
54886	chr12	95840701	95841230	+	0	NA	intron (NR_135014, intron 1 of 2)	SVA_E|Retroposon|SVA	17874	NR_135015	105369921		NR_135014	ENSG00000258343	SNRPF-DT	-	SNRPF divergent transcript	ncRNA
101472	chr17	67474471	67475830	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-3565	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
135599	chr2	167956551	167956730	+	0	NA	intron (NM_013233, intron 17 of 17)	intron (NM_013233, intron 17 of 17)	-15496	NR_131227	105616981		NR_131227	ENSG00000235335	B3GALT1-AS1	-	B3GALT1 antisense RNA 1	ncRNA
31656	chr10	97412901	97413200	+	0	NA	Intergenic	L2c|LINE|L2	-11680	NM_001145114	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
205597	chr7	21851321	21851980	+	0	NA	intron (NM_001277115, intron 66 of 81)	L1MCa|LINE|L1	94249	NM_018719	55536		NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
225246	chr9	34252751	34253480	+	0	NA	TTS (NM_001171203)	TTS (NM_001171203)	74072	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
145017	chr20	37902471	37902630	+	0	NA	promoter-TSS (NM_080607)	promoter-TSS (NM_080607)	-577	NM_080607	128434		NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
126121	chr2	26043801	26045480	+	0	NA	intron (NM_016131, intron 1 of 5)	AluSq|SINE|Alu	10556	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
131864	chr2	98705071	98705700	+	0	NA	intron (NM_012214, intron 2 of 15)	intron (NM_012214, intron 2 of 15)	25747	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
63323	chr13	114007821	114008080	+	0	NA	intron (NM_001320822, intron 17 of 23).2	intron (NM_001320822, intron 17 of 23).2	-33874	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
110039	chr19	1463921	1464180	+	0	NA	intron (NM_005883, intron 14 of 14)	AluSq|SINE|Alu	11066	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
69795	chr14	99195851	99196550	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	75997	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
208863	chr7	73723571	73724150	+	0	NA	Intergenic	AluJr|SINE|Alu	-4191	NM_001165903	6804		NM_004603	ENSG00000106089	STX1A	HPC-1|P35-1|STX1|SYN1A	syntaxin 1A	protein-coding
163503	chr3	51386551	51386850	+	0	NA	intron (NM_006010, intron 2 of 3)	L2c|LINE|L2	1409	NM_006010	7873		NM_006010	ENSG00000145050	MANF	ARMET|ARP|DDDS	mesencephalic astrocyte derived neurotrophic factor	protein-coding
86525	chr16	67159601	67160310	+	0	NA	promoter-TSS (NM_003789)	promoter-TSS (NM_003789)	-2	NM_018378	55336		NM_018378	ENSG00000135722	FBXL8	FBL8	F-box and leucine rich repeat protein 8	protein-coding
227934	chr9	94346751	94347180	+	0	NA	intron (NR_033937, intron 2 of 2)	AluY|SINE|Alu	14489	NR_033937	100132077		NR_033937		LOC100132077	-	uncharacterized LOC100132077	ncRNA
195647	chr6	37868531	37869280	+	0	NA	intron (NM_021943, intron 1 of 5)	L1M5|LINE|L1	49178	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
52596	chr12	56203301	56203900	+	0	NA	non-coding (NR_040053, exon 9 of 9)	non-coding (NR_040053, exon 9 of 9)	-14117	NM_139067	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
214880	chr7	151404001	151404980	+	0	NA	intron (NM_001284261, intron 1 of 4)	intron (NM_001284261, intron 1 of 4)	-4671	NR_034012	100131176		NR_034012	ENSG00000243836	WDR86-AS1	-	WDR86 antisense RNA 1	ncRNA
63475	chr13	114151711	114152880	+	0	NA	Intergenic	MIR|SINE|MIR	-19672	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
120359	chr19	43597901	43598230	+	0	NA	intron (NM_024327, intron 2 of 2)	MER90a|LTR|ERV1	1470	NM_001145347	79177		NM_024327	ENSG00000124444	ZNF576	-	zinc finger protein 576	protein-coding
51192	chr12	50400521	50401830	+	0	NA	promoter-TSS (NM_001352318)	promoter-TSS (NM_001352318)	26	NM_001352318	113251		NM_052879	ENSG00000161813	LARP4	PP13296	La ribonucleoprotein 4	protein-coding
25537	chr10	7389971	7390130	+	0	NA	intron (NM_001029880, intron 1 of 20)	intron (NM_001029880, intron 1 of 20)	19291	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
15360	chr1	150068901	150069630	+	0	NA	intron (NR_103998, intron 2 of 13)	intron (NR_103998, intron 2 of 13)	1489	NR_103998	11311		NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
204530	chr7	4806101	4806300	+	0	NA	intron (NM_018059, intron 9 of 14)	AluJb|SINE|Alu	-17561	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
93026	chr17	17256621	17256880	+	0	NA	intron (NM_001316355, intron 7 of 10)	AluJo|SINE|Alu	-19582	NM_144606	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
114031	chr19	10928001	10929900	+	0	NA	promoter-TSS (NM_001321440)	promoter-TSS (NM_001321440)	139	NM_138358	90580		NM_138358	ENSG00000142444	TIMM29	C19orf52|TIM29	translocase of inner mitochondrial membrane 29	protein-coding
57955	chr12	123761971	123762980	+	0	NA	promoter-TSS (NM_207437).2	promoter-TSS (NM_207437).2	-20	NM_207437	196385		NM_207437	ENSG00000197653	DNAH10	SPGF56	dynein axonemal heavy chain 10	protein-coding
12243	chr1	100431621	100432430	+	0	NA	intron (NM_001319210, intron 5 of 16)	intron (NM_001319210, intron 5 of 16)	79519	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
5104	chr1	24855321	24855950	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	63781	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
67103	chr14	68360271	68360430	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	268437	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
116970	chr19	18870301	18870500	+	0	NA	5' UTR (NM_001492, exon 7 of 8)	5' UTR (NM_001492, exon 7 of 8)	25758	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
100285	chr17	59702371	59702530	+	0	NA	intron (NM_001015509, intron 1 of 2)	MER1A|DNA|hAT-Charlie	4980	NM_016077	51651		NM_016077	ENSG00000141378	PTRH2	BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2	peptidyl-tRNA hydrolase 2	protein-coding
117265	chr19	19457601	19457800	+	0	NA	intron (NM_001384522, intron 3 of 13)	AluYj4|SINE|Alu	22637	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
42658	chr11	72493871	72494030	+	0	NA	Intergenic	Intergenic	-59266	NM_001258394	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
124351	chr19	58342871	58343030	+	0	NA	TTS (NM_181846)	TTS (NM_181846)	8262	NR_106864	102465484		NR_106864	ENSG00000277588	MIR6806	hsa-mir-6806	microRNA 6806	ncRNA
114304	chr19	11848401	11849650	+	0	NA	5' UTR (NM_001348721, exon 1 of 4)	5' UTR (NM_001348721, exon 1 of 4)	299	NM_001348724	90594		NM_152262	ENSG00000171291	ZNF439	-	zinc finger protein 439	protein-coding
216018	chr8	9079851	9080350	+	0	NA	intron (NM_001354638, intron 6 of 7)	LTR56|LTR|ERV1	-21470	NR_145772	109616996		NR_145772		SNORD3I	-	small nucleolar RNA, C/D box 3I	snoRNA
62749	chr13	106569421	106569680	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-1413	NM_018011	55082		NM_018011	ENSG00000134884	ARGLU1	-	arginine and glutamate rich 1	protein-coding
45796	chr11	119323401	119324330	+	0	NA	Intergenic	Intergenic	-6735	NM_006500	4162		NM_006500	ENSG00000076706	MCAM	CD146|HEMCAM|METCAM|MUC18|MelCAM	melanoma cell adhesion molecule	protein-coding
15395	chr1	150228971	150229130	+	0	NA	intron (NM_001280560, intron 3 of 4)	intron (NM_001280560, intron 3 of 4)	5628	NM_001136479	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
47913	chr12	6766301	6768230	+	0	NA	intron (NM_001330333, intron 1 of 4)	CpG	902	NM_001330333	5763		NM_002824	ENSG00000159335	PTMS	ParaT	parathymosin	protein-coding
153858	chr22	30224171	30225000	+	0	NA	Intergenic	Intergenic	-14609	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
83354	chr16	25058671	25059300	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7902	NR_135196	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
82834	chr16	21499801	21500230	+	0	NA	intron (NR_027155, intron 1 of 28)	intron (NR_027155, intron 1 of 28)	-1511	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
103492	chr17	78380371	78380830	+	0	NA	intron (NR_111989, intron 1 of 8)	intron (NR_111989, intron 1 of 8)	1951	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
159005	chr3	10391371	10392080	+	0	NA	intron (NM_001353564, intron 6 of 20)	intron (NM_001353564, intron 6 of 20)	2837	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
95620	chr17	37611051	37611430	+	0	NA	3' UTR (NM_007010, exon 15 of 15).2	3' UTR (NM_007010, exon 15 of 15).2	-1822	NM_001163544	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
98551	chr17	47683501	47683700	+	0	NA	3' UTR (NM_001276453, exon 21 of 21)	3' UTR (NM_001276453, exon 21 of 21)	-11664	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
17040	chr1	156078221	156079580	+	0	NA	intron (NM_001093725, intron 1 of 1)	intron (NM_001093725, intron 1 of 1)	3565	NM_001093725	92312		NM_001093725	ENSG00000254726	MEX3A	MEX-3A|RKHD4|RNF162	mex-3 RNA binding family member A	protein-coding
182463	chr5	62330101	62330500	+	0	NA	intron (NM_001243952, intron 2 of 20)	AluJb|SINE|Alu	24094	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
29653	chr10	71883401	71883600	+	0	NA	Intergenic	L1ME4c|LINE|L1	-32249	NM_001042466	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
202319	chr6	157302851	157302950	+	0	NA	intron (NM_018452, intron 3 of 3)	intron (NM_018452, intron 3 of 3)	20619	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
132317	chr2	105330951	105331250	+	0	NA	Intergenic	Intergenic	-1365	NM_001142621	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
194936	chr6	35191671	35192650	+	0	NA	Intergenic	Intergenic	-21796	NM_152753	222663		NM_152753	ENSG00000146197	SCUBE3	CEGF3|SSFSC2	signal peptide, CUB domain and EGF like domain containing 3	protein-coding
76944	chr15	78092521	78092980	+	0	NA	exon (NM_001101404, exon 1 of 6)	exon (NM_001101404, exon 1 of 6)	165	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
210505	chr7	100181951	100182250	+	0	NA	exon (NM_001282716, exon 3 of 34)	exon (NM_001282716, exon 3 of 34)	4182	NM_001282718	10734		NM_012447	ENSG00000066923	STAG3	SA3|SPGF61	STAG3 cohesin complex component	protein-coding
23022	chr1	226401371	226401550	+	0	NA	intron (NM_001618, intron 2 of 22)	MER66B|LTR|ERV1	6633	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
123135	chr19	52045221	52045680	+	0	NA	intron (NM_001322284, intron 2 of 4)	AluSp|SINE|Alu	3111	NM_001322285	9668		NM_014650	ENSG00000256087	ZNF432	-	zinc finger protein 432	protein-coding
137736	chr2	197810121	197810580	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	5757	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
188599	chr5	157182401	157182930	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	1825	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
48485	chr12	9810901	9811300	+	0	NA	intron (NR_159359, intron 1 of 5)	intron (NR_159359, intron 1 of 5)	11048	NR_159359	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
149285	chr21	28517001	28517300	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	-22168	NR_026553	118421		NR_026552	ENSG00000226935	LINC00161	C21orf100|Linc-USP16|NCRNA00161	long intergenic non-protein coding RNA 161	ncRNA
82017	chr16	11936221	11936700	+	0	NA	intron (NM_001355514, intron 4 of 8)	intron (NM_001355514, intron 4 of 8)	-19806	NM_001130007	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
94608	chr17	29750301	29750500	+	0	NA	intron (NM_033389, intron 2 of 14)	AluSz|SINE|Alu	11032	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
72625	chr15	38274271	38274430	+	0	NA	intron (NM_152594, intron 1 of 6)	intron (NM_152594, intron 1 of 6)	21514	NM_152594	161742		NM_152594	ENSG00000166068	SPRED1	LGSS|NFLS|PPP1R147|hSpred1|spred-1	sprouty related EVH1 domain containing 1	protein-coding
101	chr1	434351	434700	+	0	NA	Intergenic	L1PA8|LINE|L1	17153	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
215486	chr7	158351971	158352130	+	0	NA	intron (NM_130842, intron 1 of 21)	CpG	180763	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA
144122	chr20	33998351	33998900	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-4258	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
455	chr1	1134621	1135550	+	0	NA	Intergenic	Intergenic	-1932	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
129571	chr2	69947701	69947900	+	0	NA	Intergenic	Intergenic	14465	NM_152792	151516		NM_152792	ENSG00000244617	ASPRV1	ADLI|MUNO|SASP|SASPase|Taps	aspartic peptidase retroviral like 1	protein-coding
205742	chr7	23500471	23500930	+	0	NA	Intergenic	AluSx1|SINE|Alu	10312	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
171150	chr3	195608921	195609950	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-25495	NM_001647	347		NM_001647	ENSG00000189058	APOD	-	apolipoprotein D	protein-coding
39975	chr11	62597851	62598150	+	0	NA	intron (NM_001330292, intron 6 of 17)	MER91C|DNA|hAT-Tip100	3250	NM_001330292	9219		NM_004739	ENSG00000149480	MTA2	MTA1L1|PID	metastasis associated 1 family member 2	protein-coding
177578	chr4	119462651	119463070	+	0	NA	intron (NR_037630, intron 4 of 8)	intron (NR_037630, intron 4 of 8)	8077	NR_037630	645513		NR_037630		SEPTIN7P14	-	septin 7 pseudogene 14	pseudo
99205	chr17	49554771	49555130	+	0	NA	intron (NR_103773, intron 1 of 2)	intron (NR_103773, intron 1 of 2)	19114	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
167362	chr3	128776321	128776900	+	0	NA	intron (NM_004637, intron 1 of 5)	L1MA8|LINE|L1	50427	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
57437	chr12	121894771	121895180	+	0	NA	intron (NR_048555, intron 2 of 4)	intron (NR_048555, intron 2 of 4)	6185	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
223707	chr8	144448221	144448680	+	0	NA	Intergenic	Intergenic	-4010	NM_013432	4796		NM_013432	ENSG00000160949	TONSL	IKBR|NFKBIL2|SEMDSP	tonsoku like, DNA repair protein	protein-coding
58831	chr12	132847251	132847950	+	0	NA	intron (NM_018223, intron 14 of 17)	intron (NM_018223, intron 14 of 17)	-18731	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
144297	chr20	34711901	34712500	+	0	NA	3' UTR (NM_021202, exon 5 of 5)	3' UTR (NM_021202, exon 5 of 5)	7481	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
86899	chr16	68055501	68055700	+	0	NA	intron (NM_017803, intron 6 of 16)	MIRb|SINE|MIR	-29770	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
212509	chr7	128697171	128698100	+	0	NA	Intergenic	Intergenic	-11426	NR_104243	84691		NM_032599	ENSG00000135248	GARIN1B	FAM137A|FAM71F1|GARI-L1|GARIL1|NYD-SP18	golgi associated RAB2 interactor 1B	protein-coding
197628	chr6	83221971	83222280	+	0	NA	intron (NM_002395, intron 12 of 13)	intron (NM_002395, intron 12 of 13)	-28225	NM_001199917	5238		NM_015599	ENSG00000013375	PGM3	AGM1|IMD23|PAGM|PGM 3	phosphoglucomutase 3	protein-coding
10004	chr1	55196671	55196830	+	0	NA	intron (NM_015306, intron 1 of 67)	L2a|LINE|L2	18614	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
6718	chr1	29707051	29707480	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	330347	NR_110790	101929406		NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
70526	chr14	102370271	102370630	+	0	NA	intron (NM_001172631, intron 1 of 16)	intron (NM_001172631, intron 1 of 16)	7509	NM_014844	9895		NM_014844	ENSG00000196663	TECPR2	HSAN9|KIAA0329|SPG49	tectonin beta-propeller repeat containing 2	protein-coding
40827	chr11	64970571	64971000	+	0	NA	intron (NM_001318808, intron 1 of 11)	intron (NM_001318808, intron 1 of 11)	1306	NM_001318808	283129		NM_001037225	ENSG00000168070	MAJIN	C11orf85	membrane anchored junction protein	protein-coding
200315	chr6	133665071	133665230	+	0	NA	intron (NR_109982, intron 4 of 8)	SVA_F|Retroposon|SVA	-155997	NR_027030	154089		NM_153224		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
83633	chr16	28288951	28289450	+	0	NA	Intergenic	Intergenic	-3325	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
22179	chr1	212289871	212290230	+	0	NA	intron (NM_006243, intron 1 of 12)	intron (NM_006243, intron 1 of 12)	4640	NM_006243	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
202013	chr6	152636071	152636850	+	0	NA	intron (NM_033071, intron 1 of 145)	intron (NM_033071, intron 1 of 145)	391	NM_033071	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
111789	chr19	4445151	4445530	+	0	NA	promoter-TSS (NR_039901)	promoter-TSS (NR_039901)	-638	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
225279	chr9	34456301	34456500	+	0	NA	intron (NM_001184942, intron 1 of 5)	intron (NM_001184942, intron 1 of 5)	2170	NM_001184942	203259		NM_147202	ENSG00000164970	FAM219A	C9orf25	family with sequence similarity 219 member A	protein-coding
161256	chr3	39255651	39255980	+	0	NA	Intergenic	Intergenic	24221	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
38866	chr11	47342851	47343150	+	0	NA	intron (NM_000256, intron 14 of 33)	intron (NM_000256, intron 14 of 33)	9702	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
73297	chr15	41876101	41877000	+	0	NA	exon (NM_016642, exon 20 of 68)	exon (NM_016642, exon 20 of 68)	-9999	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
54201	chr12	79881351	79881680	+	0	NA	intron (NM_001143885, intron 2 of 25)	Tigger1|DNA|TcMar-Tigger	32396	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
63093	chr13	113216401	113216800	+	0	NA	intron (NM_003589, intron 2 of 19)	intron (NM_003589, intron 2 of 19)	6987	NM_001008895	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
142593	chr20	5567651	5568150	+	0	NA	intron (NM_019593, intron 12 of 19)	intron (NM_019593, intron 12 of 19)	43106	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
59264	chr13	24152051	24152500	+	0	NA	intron (NM_001286792, intron 3 of 14)	MLT1A0|LTR|ERVL-MaLR	-8445	NM_153023	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
58138	chr12	124904771	124904930	+	0	NA	Intergenic	Intergenic	9800	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
227162	chr9	86434151	86434250	+	0	NA	Intergenic	Intergenic	-79790	NM_001330718	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
134815	chr2	148528251	148529100	+	0	NA	Intergenic	Intergenic	-116076	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
3392	chr1	15735021	15735500	+	0	NA	promoter-TSS (NM_207348)	promoter-TSS (NM_207348)	-998	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
122967	chr19	50789321	50789580	+	0	NA	promoter-TSS (NM_033068)	promoter-TSS (NM_033068)	-965	NM_033068	93650		NM_033068	ENSG00000142513	ACP4	ACPT|AI1J	acid phosphatase 4	protein-coding
132084	chr2	101300301	101301100	+	0	NA	intron (NM_173647, intron 1 of 6)	intron (NM_173647, intron 1 of 6)	8001	NM_173647	284996		NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
118719	chr19	38229401	38230480	+	0	NA	promoter-TSS (NM_001135156)	promoter-TSS (NM_001135156)	-226	NM_001135156	8193		NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|SMARCG1|neuro-d4	double PHD fingers 1	protein-coding
158799	chr3	9699351	9699850	+	0	NA	intron (NM_001077525, intron 18 of 18)	MIRb|SINE|MIR	-4233	NM_001308388	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
173109	chr4	6425351	6425850	+	0	NA	intron (NM_001206995, intron 2 of 9)	intron (NM_001206995, intron 2 of 9)	-4482	NM_001206996	5522		NM_020416	ENSG00000074211	PPP2R2C	B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G	protein phosphatase 2 regulatory subunit Bgamma	protein-coding
148469	chr20	64042061	64043830	+	0	NA	Intergenic	CpG	6694	NM_018419	54345		NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box transcription factor 18	protein-coding
88943	chr16	87838501	87838700	+	0	NA	intron (NM_003486, intron 6 of 9)	intron (NM_003486, intron 6 of 9)	-3940	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
19961	chr1	184892181	184893280	+	0	NA	intron (NM_052966, intron 3 of 13)	intron (NM_052966, intron 3 of 13)	81778	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
72272	chr15	30755071	30755250	+	0	NA	intron (NR_038255, intron 3 of 3)	L1ME1|LINE|L1	-62876	NR_072991	390561		NR_072991		HERC2P10	-	HERC2 pseudogene 10	pseudo
118687	chr19	38046921	38047380	+	0	NA	intron (NM_015073, intron 2 of 21)	MIR|SINE|MIR	-115946	NR_145800	109623473		NR_145800		SNORD152	-	small nucleolar RNA, C/D box 152	snoRNA
14904	chr1	147084151	147085880	+	0	NA	promoter-TSS (NR_121645)	promoter-TSS (NR_121645)	-259	NR_121645	101447996		NR_121645	ENSG00000286172	RNVU1-8	RNU1-145|vU1.8	RNA, variant U1 small nuclear 8	snRNA
95571	chr17	36939451	36940000	+	0	NA	intron (NM_005568, intron 1 of 4)	CpG-11024	2250	NM_005568	3975		NM_005568	ENSG00000273706	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
91579	chr17	5210821	5211080	+	0	NA	exon (NM_001271842, exon 5 of 5)	exon (NM_001271842, exon 5 of 5)	18943	NR_152840	100130950		NR_034082	ENSG00000261879	ZNF594-DT	-	ZNF594 divergent transcript	ncRNA
102289	chr17	75325221	75325500	+	0	NA	intron (NM_203506, intron 3 of 4)	intron (NM_203506, intron 3 of 4)	-35911	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
232287	chr9	134449371	134450530	+	0	NA	Intergenic	Intergenic	43390	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
104514	chr17	81234551	81234650	+	0	NA	intron (NM_144679, intron 4 of 11)	intron (NM_144679, intron 4 of 11)	4455	NM_144679	146705		NM_144679	ENSG00000167302	TEPSIN	C17orf56|ENTHD2	TEPSIN adaptor related protein complex 4 accessory protein	protein-coding
228900	chr9	112844601	112845200	+	0	NA	intron (NM_001012994, intron 6 of 8)	intron (NM_001012994, intron 6 of 8)	45976	NM_033051	57864		NM_033051	ENSG00000119457	SLC46A2	Ly110|TSCOT	solute carrier family 46 member 2	protein-coding
137113	chr2	190995421	190995800	+	0	NA	intron (NM_139266, intron 9 of 22)	THE1B|LTR|ERVL-MaLR	18561	NM_007315	6772		NM_007315	ENSG00000115415	STAT1	CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91	signal transducer and activator of transcription 1	protein-coding
199725	chr6	125748911	125751200	+	0	NA	intron (NM_012259, intron 1 of 4)	CpG-23989	423	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
138061	chr2	201656021	201656880	+	0	NA	intron (NM_033066, intron 16 of 21)	intron (NM_033066, intron 16 of 21)	-12947	NM_001044385	65062		NM_152388	ENSG00000155755	TMEM237	ALS2CR4|JBTS14	transmembrane protein 237	protein-coding
111617	chr19	4114771	4116180	+	0	NA	intron (NM_030662, intron 2 of 10)	intron (NM_030662, intron 2 of 10)	8647	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
151697	chr22	17268471	17268650	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-1827	NR_038398	27442		NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3	ncRNA
214752	chr7	151062971	151063130	+	0	NA	5' UTR (NM_001199694, exon 1 of 22)	5' UTR (NM_001199694, exon 1 of 22)	408	NM_001199694	6522		NM_003040	ENSG00000164889	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3|OPTB9	solute carrier family 4 member 2	protein-coding
230006	chr9	126965801	126966100	+	0	NA	exon (NM_001322324, exon 3 of 18)	exon (NM_001322324, exon 3 of 18)	3725	NM_001366401	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
81740	chr16	11356651	11357350	+	0	NA	Intergenic	Intergenic	11541	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
128156	chr2	48445251	48445730	+	0	NA	intron (NM_001193475, intron 1 of 19)	MER5A1|DNA|hAT-Charlie	4721	NM_001193475	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
124678	chr2	3396001	3396350	+	0	NA	intron (NM_016030, intron 2 of 11)	L1MEc|LINE|L1	16481	NM_016030	51112		NM_016030	ENSG00000171853	TRAPPC12	CGI-87|PEBAS|TTC-15|TTC15	trafficking protein particle complex subunit 12	protein-coding
29334	chr10	69410101	69410300	+	0	NA	intron (NM_001057, intron 2 of 4)	intron (NM_001057, intron 2 of 4)	6718	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
213232	chr7	133601751	133601850	+	0	NA	intron (NM_021807, intron 9 of 17)	intron (NM_021807, intron 9 of 17)	223088	NR_120513	101928861		NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
193015	chr6	28303521	28304100	+	0	NA	Intergenic	Intergenic	22273	NM_032507	84547		NM_032507	ENSG00000137338	PGBD1	HUCEP-4|SCAND4|dJ874C20.4	piggyBac transposable element derived 1	protein-coding
234583	chrX	19769321	19769900	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	30163	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
228650	chr9	107239471	107239780	+	0	NA	Intergenic	Intergenic	-43654	NM_002874	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
143645	chr20	31860201	31860400	+	0	NA	TTS (NM_080611)	TTS (NM_080611)	9931	NM_177991	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
210164	chr7	98285371	98286600	+	0	NA	intron (NM_001159491, intron 2 of 2)	intron (NM_001159491, intron 2 of 2)	4299	NM_015379	25798		NM_015379	ENSG00000164713	BRI3	I3	brain protein I3	protein-coding
207184	chr7	43617951	43618950	+	0	NA	intron (NR_135582, intron 6 of 6)	L2c|LINE|L2	35342	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
20933	chr1	202202671	202202830	+	0	NA	promoter-TSS (NM_021636)	promoter-TSS (NM_021636)	-962	NM_021636	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
31525	chr10	96834301	96834500	+	0	NA	intron (NM_032440, intron 2 of 7)	intron (NM_032440, intron 2 of 7)	1455	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
25771	chr10	11144771	11145900	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-19546	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
21779	chr1	206928501	206929080	+	0	NA	3' UTR (NM_002644, exon 11 of 11)	3' UTR (NM_002644, exon 11 of 11)	-6849	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
84275	chr16	30064701	30067880	+	0	NA	intron (NM_184041, intron 1 of 8)	CpG	530	NM_184041	226		NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase, fructose-bisphosphate A	protein-coding
127789	chr2	44223651	44224030	+	0	NA	intron (NM_177968, intron 5 of 5)	AluY|SINE|Alu	-51640	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
57089	chr12	121030751	121031050	+	0	NA	intron (NM_003733, intron 3 of 5)	AluJb|SINE|Alu	8342	NM_003733	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
223882	chr9	271751	272600	+	0	NA	promoter-TSS (NM_001190458)	promoter-TSS (NM_001190458)	-871	NM_001190458	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
78336	chr15	91018271	91019250	+	0	NA	intron (NM_018668, intron 1 of 22)	MER20|DNA|hAT-Charlie	3834	NM_018668	26276		NM_018668	ENSG00000184056	VPS33B	KDIDAR|PFIC12	VPS33B late endosome and lysosome associated	protein-coding
195668	chr6	38162121	38163130	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-318971	NR_144472	101929425		NR_144472	ENSG00000226533	BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
70722	chr14	103344911	103346330	+	0	NA	TTS (NM_183004)	TTS (NM_183004)	7771	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
192701	chr6	26307621	26308300	+	0	NA	Intergenic	Intergenic	-22426	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
219376	chr8	70380071	70380630	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	23040	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
188577	chr5	157147701	157147900	+	0	NA	Intergenic	AluSp|SINE|Alu	-4935	NM_004270	9443		NM_004270	ENSG00000155868	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
17117	chr1	156162101	156162300	+	0	NA	intron (NM_001370567, intron 8 of 13)	AluSc|SINE|Alu	7652	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
16064	chr1	153293901	153294100	+	0	NA	Intergenic	Intergenic	18952	NM_052891	114771		NM_052891	ENSG00000159527	PGLYRP3	PGLYRPIalpha|PGRP-Ialpha|PGRPIA	peptidoglycan recognition protein 3	protein-coding
56479	chr12	116187171	116187330	+	0	NA	intron (NM_015335, intron 2 of 30)	MIR|SINE|MIR	-38596	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
89678	chr16	89379201	89379630	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-51503	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
86656	chr16	67463821	67464080	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	17207	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
233565	chrX	283151	284830	+	0	NA	intron (NM_001370373, intron 1 of 6)	AluSq|SINE|Alu	512	NM_001370373	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228365	chr9	99092621	99093380	+	0	NA	Intergenic	Intergenic	-12113	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
225122	chr9	33473351	33474730	+	0	NA	promoter-TSS (NM_022917)	promoter-TSS (NM_022917)	-97	NM_139235	65083		NM_022917	ENSG00000165271	NOL6	NRAP|UTP22|bA311H10.1	nucleolar protein 6	protein-coding
211162	chr7	102578721	102579680	+	0	NA	TTS (NM_006989)	TTS (NM_006989)	-6579	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
129419	chr2	69309401	69310080	+	0	NA	Intergenic	Intergenic	77487	NM_002056	2673		NM_002056	ENSG00000198380	GFPT1	CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG	glutamine--fructose-6-phosphate transaminase 1	protein-coding
25948	chr10	11472121	11472470	+	0	NA	intron (NM_014688, intron 14 of 14)	intron (NM_014688, intron 14 of 14)	59985	NM_001080491	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
24033	chr1	235278471	235278630	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-48666	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
11660	chr1	91810421	91811180	+	0	NA	intron (NR_036634, intron 2 of 17)	MIR|SINE|MIR	75351	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
190635	chr5	181214521	181214930	+	0	NA	Intergenic	Intergenic	7908	NR_039781	100616342		NR_039781	ENSG00000264732	MIR4638	mir-4638	microRNA 4638	ncRNA
153970	chr22	30368251	30368550	+	0	NA	TTS (NR_046312)	TTS (NR_046312)	9505	NR_046312	85371		NR_046312		KIAA1656	-	KIAA1656 protein	ncRNA
89367	chr16	88780951	88783070	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	3210	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
168504	chr3	143775401	143775700	+	0	NA	intron (NM_173653, intron 4 of 15)	intron (NM_173653, intron 4 of 15)	72918	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
203864	chr7	1464771	1466180	+	0	NA	Intergenic	AluSx|SINE|Alu	-6005	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
77960	chr15	89366801	89367100	+	0	NA	intron (NR_133002, intron 1 of 5)	intron (NR_133002, intron 1 of 5)	-1067	NR_029692	407051		NR_029692	ENSG00000284329	MIR9-3	MIRN9-3|hsa-mir-9-3|miRNA9-3|mir-9-3	microRNA 9-3	ncRNA
213098	chr7	131121301	131121900	+	0	NA	intron (NM_001145354, intron 1 of 18)	AluY|SINE|Alu	11506	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
233472	chr9	137724771	137724930	+	0	NA	intron (NM_024757, intron 3 of 26)	intron (NM_024757, intron 3 of 26)	63556	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
116858	chr19	18611221	18612160	+	0	NA	Intergenic	CpG	-1180	NM_012109	25789		NM_012109	ENSG00000105696	TMEM59L	BSMAP|C19orf4	transmembrane protein 59 like	protein-coding
11695	chr1	91852271	91852630	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	33701	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
214556	chr7	150563001	150563230	+	0	NA	Intergenic	HERVK14C-int|LTR|ERVK	-4255	NM_001363532	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
143971	chr20	32844721	32845180	+	0	NA	intron (NM_012325, intron 5 of 6)	intron (NM_012325, intron 5 of 6)	-13973	NM_001143967	388795		NM_001143967	ENSG00000215529	EFCAB8	-	EF-hand calcium binding domain 8	protein-coding
106412	chr18	13487151	13487850	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	27553	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
62967	chr13	112289051	112289630	+	0	NA	Intergenic	Intergenic	-16340	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
43139	chr11	75281271	75281630	+	0	NA	intron (NM_020251, intron 6 of 14)	intron (NM_020251, intron 6 of 14)	40676	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
5766	chr1	26492451	26492950	+	0	NA	Intergenic	L2a|LINE|L2	20260	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
127617	chr2	43047471	43047630	+	0	NA	Intergenic	Intergenic	-8007	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
91320	chr17	4366001	4368030	+	0	NA	promoter-TSS (NM_003342)	promoter-TSS (NM_003342)	-341	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
77995	chr15	89572901	89573100	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2469	NM_152259	90381		NM_152259	ENSG00000140534	TICRR	C15orf42|SLD3|Treslin	TOPBP1 interacting checkpoint and replication regulator	protein-coding
82140	chr16	14766271	14766630	+	0	NA	TTS (NM_001277323).2	TTS (NM_001277323).2	15637	NM_001277323	642778		NM_001277323	ENSG00000224712	NPIPA3	-	nuclear pore complex interacting protein family member A3	protein-coding
174491	chr4	39946101	39946830	+	0	NA	intron (NM_001100399, intron 2 of 32)	intron (NM_001100399, intron 2 of 32)	31446	NM_001100399	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
30424	chr10	79023471	79023830	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	43798	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
78907	chr15	101152871	101153030	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	99098	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
67735	chr14	73567451	73568500	+	0	NA	non-coding (NR_046028, exon 1 of 4)	non-coding (NR_046028, exon 1 of 4)	355	NR_046028	10965		NM_006821	ENSG00000119673	ACOT2	CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128	acyl-CoA thioesterase 2	protein-coding
233104	chr9	137121171	137122050	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-6877	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
45592	chr11	118891021	118891280	+	0	NA	intron (NM_001716, intron 1 of 1)	intron (NM_001716, intron 1 of 1)	-2242	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
121265	chr19	46697101	46697730	+	0	NA	intron (NM_001079881, intron 9 of 18)	(CCCAC)n|Simple_repeat|Simple_repeat	11939	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
65141	chr14	45087101	45087730	+	0	NA	intron (NM_017922, intron 1 of 13)	intron (NM_017922, intron 1 of 13)	3299	NM_017922	55015		NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
61149	chr13	48749251	48750150	+	0	NA	Intergenic	Intergenic	95771	NM_001308476	57105		NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding
192639	chr6	26155521	26156800	+	0	NA	promoter-TSS (NM_005321)	promoter-TSS (NM_005321)	-169	NM_005321	3008		NM_005321	ENSG00000168298	H1-4	H1.4|H1E|H1F4|H1s-4|HIST1H1E|RMNS|dJ221C16.5	H1.4 linker histone, cluster member	protein-coding
13550	chr1	115138851	115139250	+	0	NA	Intergenic	Intergenic	-49547	NM_005725	10100		NM_005725	ENSG00000134198	TSPAN2	NET3|TSN2|TSPAN-2	tetraspanin 2	protein-coding
22867	chr1	225651971	225652130	+	0	NA	intron (NM_001377481, intron 1 of 15)	intron (NM_001377481, intron 1 of 15)	1073	NM_018212	55740		NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	ENAH actin regulator	protein-coding
115225	chr19	14500721	14500980	+	0	NA	Intergenic	AluSx|SINE|Alu	-4701	NM_202494	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
213066	chr7	131075301	131075500	+	0	NA	intron (NR_109852, intron 2 of 5)	MER30|DNA|hAT-Charlie	31630	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
189984	chr5	177453371	177453530	+	0	NA	intron (NM_001174102, intron 1 of 2)	intron (NM_001174102, intron 1 of 2)	5125	NM_001174102	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
160860	chr3	33252851	33252950	+	0	NA	Intergenic	L1MB8|LINE|L1	-24125	NM_001349319	25827		NM_012157	ENSG00000153558	FBXL2	FBL2|FBL3	F-box and leucine rich repeat protein 2	protein-coding
70214	chr14	100587001	100587880	+	0	NA	promoter-TSS (NM_001385085)	promoter-TSS (NM_001385085)	-23	NM_001385089	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
84622	chr16	30703571	30703730	+	0	NA	intron (NM_006662, intron 3 of 33)	AluY|SINE|Alu	4479	NM_006662	10847		NM_006662	ENSG00000080603	SRCAP	DEHMBA|DOMO1|EAF1|FLHS|SWR1	Snf2 related CREBBP activator protein	protein-coding
143308	chr20	25330101	25330550	+	0	NA	intron (NM_001042472, intron 2 of 12)	L1PA3|LINE|L1	60510	NM_015600	26090		NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12	abhydrolase domain containing 12, lysophospholipase	protein-coding
124800	chr2	7488701	7489050	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	67614	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
79041	chr16	76771	76930	+	0	NA	promoter-TSS (NM_001015054)	promoter-TSS (NM_001015054)	-169	NM_001015054	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
151679	chr22	17115771	17116880	+	0	NA	TTS (NM_001163079)	TTS (NM_001163079)	5035	NM_031890	27439		NM_031890	ENSG00000183307	TMEM121B	CECR6	transmembrane protein 121B	protein-coding
195940	chr6	41925751	41926050	+	0	NA	intron (NM_004053, intron 1 of 6)	AluSp|SINE|Alu	4401	NM_004053	705		NM_004053	ENSG00000112578	BYSL	BYSTIN|Enp1	bystin like	protein-coding
65848	chr14	55000321	55000580	+	0	NA	intron (NM_007086, intron 10 of 25)	intron (NM_007086, intron 10 of 25)	26649	NM_007086	11169		NM_007086	ENSG00000198554	WDHD1	AND-1|AND1|CHTF4|CTF4	WD repeat and HMG-box DNA binding protein 1	protein-coding
85564	chr16	53451351	53452180	+	0	NA	exon (NM_001323611, exon 5 of 22)	exon (NM_001323611, exon 5 of 22)	16146	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
196095	chr6	42339901	42340100	+	0	NA	intron (NM_033502, intron 3 of 17)	intron (NM_033502, intron 3 of 17)	112051	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
162730	chr3	49025271	49027880	+	0	NA	exon (NM_000884, exon 8 of 14)	exon (NM_000884, exon 8 of 14)	2823	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
125094	chr2	9710201	9710400	+	0	NA	Intergenic	Intergenic	-79303	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
10192	chr1	61745451	61745750	+	0	NA	intron (NM_176877, intron 1 of 42)	(TTATT)n|Simple_repeat|Simple_repeat	3120	NM_176877	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
174760	chr4	47483921	47484380	+	0	NA	Intergenic	Intergenic	-1125	NM_020453	57205		NM_020453	ENSG00000145246	ATP10D	ATPVD	ATPase phospholipid transporting 10D (putative)	protein-coding
87352	chr16	70369051	70369350	+	0	NA	intron (NM_018332, intron 9 of 11)	AluSg|SINE|Alu	22297	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
101828	chr17	73643021	73643750	+	0	NA	intron (NM_001144952, intron 1 of 44)	CpG	1060	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
99929	chr17	57084271	57086980	+	0	NA	promoter-TSS (NM_001370426)	promoter-TSS (NM_001370426)	-92	NM_001242903	8165		NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding
152021	chr22	19432101	19433780	+	0	NA	promoter-TSS (NM_001318152)	promoter-TSS (NM_001318152)	1	NM_001318152	64976		NM_003776	ENSG00000185608	MRPL40	L40mt|MRP-L22|MRP-L40|MRPL22|NLVCF|URIM|mL40	mitochondrial ribosomal protein L40	protein-coding
200426	chr6	134979201	134979400	+	0	NA	TTS (NR_037435)	TTS (NR_037435)	132	NR_037435	100500880		NR_037435	ENSG00000283409	MIR3662	mir-3662	microRNA 3662	ncRNA
234055	chrX	7083901	7085030	+	0	NA	intron (NM_001178136, intron 2 of 3)	intron (NM_001178136, intron 2 of 3)	-62825	NM_001320750	412		NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase	protein-coding
18418	chr1	161449701	161450300	+	0	NA	Intergenic	CpG	-55457	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
144279	chr20	34661571	34661930	+	0	NA	intron (NM_080476, intron 1 of 11)	L1PA15|LINE|L1	15342	NM_080476	128869		NM_080476	ENSG00000101464	PIGU	CDC91L1|GAB1|GPIBD21|NEDBSS|PIG-U	phosphatidylinositol glycan anchor biosynthesis class U	protein-coding
172213	chr4	1297401	1298000	+	0	NA	intron (NR_123716, intron 1 of 6)	L2a|LINE|L2	7809	NM_001297431	10296		NM_005882	ENSG00000090316	MAEA	EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5	macrophage erythroblast attacher, E3 ubiquitin ligase	protein-coding
238915	chrX	154725171	154725700	+	0	NA	intron (NR_104114, intron 1 of 8)	L1MEc|LINE|L1	25642	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
235453	chrX	46543351	46543730	+	0	NA	intron (NM_001190417, intron 2 of 5)	intron (NM_001190417, intron 2 of 5)	1881	NM_001039891	641339		NM_001039891	ENSG00000251192	ZNF674	MRX92|ZNF673B	zinc finger protein 674	protein-coding
95737	chr17	38587801	38588650	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	17727	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
41269	chr11	65842921	65843980	+	0	NA	intron (NM_152760, intron 1 of 12)	AluSx1|SINE|Alu	9487	NM_152760	254122		NM_152760	ENSG00000172803	SNX32	SNX6B	sorting nexin 32	protein-coding
45261	chr11	118000171	118000330	+	0	NA	non-coding (NR_026691, exon 8 of 8)	non-coding (NR_026691, exon 8 of 8)	13856	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
225297	chr9	34524951	34525800	+	0	NA	Intergenic	Intergenic	-2385	NM_198573	375704		NM_198573	ENSG00000168913	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
27024	chr10	26850521	26850780	+	0	NA	intron (NM_001178116, intron 1 of 11)	AluSg|SINE|Alu	10308	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
53257	chr12	62793851	62794400	+	0	NA	intron (NM_020700, intron 3 of 9)	intron (NM_020700, intron 3 of 9)	141025	NM_020700	57460		NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent 1H	protein-coding
137532	chr2	197211821	197212290	+	0	NA	intron (NM_153697, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	14064	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
172982	chr4	4142651	4143230	+	0	NA	Intergenic	CpG	83989	NM_177998	133060		NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
195696	chr6	38688701	38688900	+	0	NA	intron (NM_006708, intron 1 of 5)	MLT1E2|LTR|ERVL-MaLR	14345	NM_006708	2739		NM_006708	ENSG00000124767	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
188320	chr5	151213791	151215980	+	0	NA	intron (NR_160730, intron 2 of 3)	intron (NR_160730, intron 2 of 3)	2751	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
60833	chr13	45415671	45415830	+	0	NA	intron (NM_001286807, intron 1 of 9)	AluSx1|SINE|Alu	-2412	NR_047031	100874259		NR_047031	ENSG00000251015	SLC25A30-AS1	-	SLC25A30 antisense RNA 1	ncRNA
174517	chr4	40055551	40056300	+	0	NA	promoter-TSS (NM_018177)	promoter-TSS (NM_018177)	-925	NM_018177	55728		NM_018177	ENSG00000078177	N4BP2	B3BP	NEDD4 binding protein 2	protein-coding
231985	chr9	133329171	133329650	+	0	NA	non-coding (NR_103874, exon 5 of 5)	non-coding (NR_103874, exon 5 of 5)	6778	NR_103874	6838		NM_006753	ENSG00000148296	SURF6	RRP14	surfeit 6	protein-coding
205546	chr7	20267671	20267830	+	0	NA	Intergenic	MER57E2|LTR|ERV1	-28958	NR_110117	101927769		NR_110117	ENSG00000226097	LOC101927769	-	uncharacterized LOC101927769	ncRNA
197386	chr6	73494771	73495280	+	0	NA	intron (NM_133645, intron 11 of 12)	AluSx|SINE|Alu	23413	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
28751	chr10	61993901	61994450	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	-55182	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
102853	chr17	76488701	76489130	+	0	NA	intron (NR_164786, intron 1 of 19)	AluSx3|SINE|Alu	12508	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
168165	chr3	139756901	139757100	+	0	NA	Intergenic	Intergenic	-78950	NM_178177	349565		NM_178177	ENSG00000163864	NMNAT3	FKSG76|PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
186969	chr5	139675851	139676900	+	0	NA	intron (NM_001317209, intron 1 of 2)	intron (NM_001317209, intron 1 of 2)	932	NM_001317209	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
9623	chr1	52413521	52413980	+	0	NA	intron (NM_032864, intron 5 of 9)	intron (NM_032864, intron 5 of 9)	9148	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
165322	chr3	88000971	88001280	+	0	NA	Intergenic	Intergenic	18549	NM_000866	3355		NM_000866	ENSG00000179097	HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	5-hydroxytryptamine receptor 1F	protein-coding
158777	chr3	9415851	9416430	+	0	NA	intron (NM_001349451, intron 1 of 25)	intron (NM_001349451, intron 1 of 25)	18525	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
40446	chr11	64205671	64205830	+	0	NA	promoter-TSS (NM_001382361)	promoter-TSS (NM_001382361)	-170	NM_001382448	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
142020	chr20	1656301	1657200	+	0	NA	intron (NM_018556, intron 1 of 5)	intron (NM_018556, intron 1 of 5)	1029	NM_080816	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
36740	chr11	9267751	9268050	+	0	NA	Intergenic	L2b|LINE|L2	-2550	NM_015213	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
137655	chr2	197428701	197429400	+	0	NA	intron (NM_001005526, intron 1 of 4)	intron (NM_001005526, intron 1 of 4)	5978	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
171107	chr3	195507601	195507800	+	0	NA	Intergenic	Intergenic	35625	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
18850	chr1	167715301	167715890	+	0	NA	Intergenic	Intergenic	-6387	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
125406	chr2	11697101	11697530	+	0	NA	intron (NM_001349207, intron 1 of 20)	intron (NM_001349207, intron 1 of 20)	19771	NM_001349208	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
43906	chr11	88844901	88845450	+	0	NA	intron (NM_001143831, intron 3 of 9)	Tigger1|DNA|TcMar-Tigger	218484	NM_000842	2915		NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
76983	chr15	78267171	78267530	+	0	NA	intron (NM_001130183, intron 1 of 6)	intron (NM_001130183, intron 1 of 6)	1132	NM_001130183	55466		NM_018602	ENSG00000140403	DNAJA4	MST104|MSTP104|PRO1472	DnaJ heat shock protein family (Hsp40) member A4	protein-coding
132732	chr2	109218321	109218730	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-76937	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
1494	chr1	2761751	2762180	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	38903	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
224230	chr9	5799271	5799430	+	0	NA	intron (NM_024896, intron 11 of 14)	intron (NM_024896, intron 11 of 14)	33767	NM_024896	79956		NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding
53777	chr12	68809871	68810030	+	0	NA	intron (NM_002392, intron 2 of 10)	L1ME3G|LINE|L1	926	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
91065	chr17	3031071	3031430	+	0	NA	intron (NM_001100398, intron 22 of 23)	intron (NM_001100398, intron 22 of 23)	32357	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
59497	chr13	26719071	26719230	+	0	NA	Intergenic	Intergenic	41636	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
148745	chr21	7626101	7626650	+	0	NA	Intergenic	Intergenic	65826	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
223750	chr8	144512771	144513230	+	0	NA	exon (NM_004260, exon 15 of 21)	exon (NM_004260, exon 15 of 21)	3930	NM_138431	113655		NM_138431	ENSG00000167700	MFSD3	SLC33A2	major facilitator superfamily domain containing 3	protein-coding
40628	chr11	64712251	64714450	+	0	NA	exon (NM_001376262, exon 2 of 23)	exon (NM_001376262, exon 2 of 23)	9847	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
120585	chr19	45005051	45005430	+	0	NA	intron (NM_006509, intron 2 of 10)	MER5A|DNA|hAT-Charlie	3776	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
150270	chr21	41772351	41772650	+	0	NA	Intergenic	Intergenic	-5448	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
511	chr1	1204471	1205430	+	0	NA	intron (NM_148901, intron 2 of 3)	intron (NM_148901, intron 2 of 3)	1642	NM_148902	8784		NM_004195	ENSG00000186891	TNFRSF18	AITR|CD357|ENERGEN|GITR|GITR-D	TNF receptor superfamily member 18	protein-coding
5991	chr1	26989371	26989730	+	0	NA	Intergenic	AluSg7|SINE|Alu	-4142	NM_001013642	388610		NM_001013642	ENSG00000253368	TRNP1	C1orf225|TNRP|TRNP	TMF1 regulated nuclear protein 1	protein-coding
73464	chr15	43491021	43491500	+	0	NA	intron (NM_001355001, intron 4 of 28)	AluSz|SINE|Alu	1896	NM_001141980	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
100474	chr17	61455371	61455530	+	0	NA	intron (NM_001321120, intron 1 of 8)	intron (NM_001321120, intron 1 of 8)	-1038	NM_018488	9496		NM_018488	ENSG00000121075	TBX4	ICPPS|PAPPAS|SPS	T-box transcription factor 4	protein-coding
156802	chr22	41920701	41921130	+	0	NA	Intergenic	Intergenic	2382	NR_039760	100616259		NR_039760	ENSG00000283829	MIR378I	-	microRNA 378i	ncRNA
204362	chr7	2912201	2912780	+	0	NA	intron (NM_032415, intron 22 of 24)	L2c|LINE|L2	-68182	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
130862	chr2	87402201	87402400	+	0	NA	Intergenic	AluSx3|SINE|Alu	-53127	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
137905	chr2	200866951	200867550	+	0	NA	Intergenic	MER50|LTR|ERV1	-2592	NR_027856	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
63116	chr13	113327671	113328500	+	0	NA	intron (NM_024719, intron 5 of 7)	intron (NM_024719, intron 5 of 7)	-23588	NR_120385	100874068		NR_046541		GRTP1-AS1	-	GRTP1 antisense RNA 1	ncRNA
174336	chr4	38683571	38683730	+	0	NA	intron (NM_016531, intron 2 of 5)	intron (NM_016531, intron 2 of 5)	-19022	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
52981	chr12	57487521	57488980	+	0	NA	intron (NM_004990, intron 1 of 20)	CpG	182	NM_004990	4141		NM_004990	ENSG00000166986	MARS1	CMT2U|ILFS2|ILLD|MARS|METRS|MRS|MTRNS|SPG70|TTD9	methionyl-tRNA synthetase 1	protein-coding
140271	chr2	232318851	232319150	+	0	NA	intron (NR_046476, intron 14 of 20)	intron (NR_046476, intron 14 of 20)	-59751	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
180743	chr5	31995701	31995900	+	0	NA	intron (NM_178140, intron 4 of 24)	intron (NM_178140, intron 4 of 24)	-59641	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
162366	chr3	47849301	47849500	+	0	NA	promoter-TSS (NR_031595)	promoter-TSS (NR_031595)	-155	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
113787	chr19	10553701	10554600	+	0	NA	TTS (NM_001281504)	TTS (NM_001281504)	2028	NR_031603	100302226		NR_031603	ENSG00000221410	MIR1238	MIRN1238|hsa-mir-1238	microRNA 1238	ncRNA
91090	chr17	3558451	3558980	+	0	NA	promoter-TSS (NM_001258205)	promoter-TSS (NM_001258205)	-903	NM_145068	162514		NM_145068	ENSG00000167723	TRPV3	FNEPPK2|OLMS|OLMS1|VRL3	transient receptor potential cation channel subfamily V member 3	protein-coding
79610	chr16	1089651	1090080	+	0	NA	3' UTR (NM_207419, exon 5 of 5)	3' UTR (NM_207419, exon 5 of 5)	6379	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
28271	chr10	45971621	45973130	+	0	NA	promoter-TSS (NR_029388)	promoter-TSS (NR_029388)	-1	NR_160518	114004351		NR_160518		PARGP1-AGAP4	-	PARGP1-AGAP4 readthrough	pseudo
209455	chr7	76459471	76459630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2105	NM_020892	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
19802	chr1	182602521	182602780	+	0	NA	intron (NM_002928, intron 2 of 4)	intron (NM_002928, intron 2 of 4)	1739	NM_002928	6004		NM_002928	ENSG00000143333	RGS16	A28-RGS14|A28-RGS14P|RGS-R	regulator of G protein signaling 16	protein-coding
222198	chr8	133045971	133046700	+	0	NA	TTS (NR_107002)	TTS (NR_107002)	246	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
194705	chr6	33703271	33703430	+	0	NA	intron (NM_032340, intron 1 of 3)	AluSq2|SINE|Alu	5222	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
35198	chr11	802971	803550	+	0	NA	exon (NM_145887, exon 3 of 16)	exon (NM_145887, exon 3 of 16)	1971	NM_145886	55367		NM_018494	ENSG00000177595	PIDD1	LRDD|MRT75|PIDD	p53-induced death domain protein 1	protein-coding
122948	chr19	50719371	50720380	+	0	NA	promoter-TSS (NM_016148)	promoter-TSS (NM_016148)	-73	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
1004	chr1	1850721	1851380	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSg|SINE|Alu	40037	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
12284	chr1	100613921	100614850	+	0	NA	Intergenic	Intergenic	32619	NR_038914	100128787		NR_038914		LINC01349	-	long intergenic non-protein coding RNA 1349	ncRNA
224384	chr9	8857671	8858030	+	0	NA	promoter-TSS (NM_001377946)	promoter-TSS (NM_001377946)	17	NM_001171025	5789		NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|R-PTP-delta|RPTPDELTA	protein tyrosine phosphatase receptor type D	protein-coding
70655	chr14	103021821	103022480	+	0	NA	intron (NM_006035, intron 1 of 36)	L2|LINE|L2	35399	NM_006035	9578		NM_006035	ENSG00000198752	CDC42BPB	CHOCNS|MRCKB	CDC42 binding protein kinase beta	protein-coding
220813	chr8	102791071	102791230	+	0	NA	Intergenic	Intergenic	-15672	NR_149020	401472		NR_149020		GASAL1	GASL1	growth arrest associated lncRNA 1	ncRNA
113619	chr19	10317671	10318280	+	0	NA	intron (NM_133452, intron 11 of 12)	MIRb|SINE|MIR	-1960	NM_001031734	112812		NM_080665	ENSG00000267673	FDX2	FDX1L|MEOAL	ferredoxin 2	protein-coding
153699	chr22	29269671	29271030	+	0	NA	intron (NM_001163286, intron 1 of 15)	intron (NM_001163286, intron 1 of 15)	2082	NM_001163287	2130		NM_005243	ENSG00000182944	EWSR1	EWS|EWS-FLI1|bK984G1.4	EWS RNA binding protein 1	protein-coding
74381	chr15	58875151	58875650	+	0	NA	Intergenic	Intergenic	58279	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
135320	chr2	160338921	160339180	+	0	NA	intron (NM_016836, intron 2 of 13)	MIRb|SINE|MIR	-67155	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
149474	chr21	31785801	31786030	+	0	NA	Intergenic	(ACC)n|Simple_repeat|Simple_repeat	-53797	NM_001145444	57466		NM_020706	ENSG00000156304	SCAF4	FZS|SFRS15|SRA4	SR-related CTD associated factor 4	protein-coding
116677	chr19	18407271	18407430	+	0	NA	Intergenic	Intergenic	-9728	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
96694	chr17	41334801	41335800	+	0	NA	Intergenic	Intergenic	15528	NM_004138	3883		NM_004138	ENSG00000006059	KRT33A	HA3I|Ha-3I|K33A|KRTHA3A|Krt1-3|hHa3-I	keratin 33A	protein-coding
221631	chr8	125839771	125839930	+	0	NA	Intergenic	L1PREC2|LINE|L1	111347	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
219349	chr8	70271601	70271800	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	131690	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
109271	chr19	538921	539480	+	0	NA	intron (NM_004359, intron 4 of 4)	intron (NM_004359, intron 4 of 4)	-4853	NM_005317	3004		NM_005317	ENSG00000197540	GZMM	LMET1|MET1	granzyme M	protein-coding
35405	chr11	1392201	1392400	+	0	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	2366	NM_003957	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
31899	chr10	100346221	100348200	+	0	NA	promoter-TSS (NM_005063)	promoter-TSS (NM_005063)	-23	NM_005063	6319		NM_005063	ENSG00000099194	SCD	FADS5|MSTP008|SCD1|SCDOS|hSCD1	stearoyl-CoA desaturase	protein-coding
35891	chr11	2403871	2404450	+	0	NA	TTS (NM_005706)	TTS (NM_005706)	3410	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
139758	chr2	229921001	229923500	+	0	NA	promoter-TSS (NM_001348326)	promoter-TSS (NM_001348326)	-241	NM_001348323	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
52792	chr12	56717551	56718200	+	0	NA	exon (NM_001365896, exon 3 of 9)	exon (NM_001365896, exon 3 of 9)	7424	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
170499	chr3	186180121	186180600	+	0	NA	intron (NM_001346, intron 22 of 24)	intron (NM_001346, intron 22 of 24)	-71271	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
167530	chr3	129306571	129307330	+	0	NA	TTS (NM_001370345)	TTS (NM_001370345)	-9321	NR_026991	339942		NM_001025468		H1-10-AS1	C3orf47|H1FX-AS1	H1-10 antisense RNA 1	ncRNA
180644	chr5	17217351	17217750	+	0	NA	promoter-TSS (NR_027253)	promoter-TSS (NR_027253)	-81	NM_006317	10409		NM_006317	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant membrane attached signal protein 1	protein-coding
38376	chr11	44679771	44680130	+	0	NA	Intergenic	Intergenic	-47012	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
61347	chr13	50907851	50908150	+	0	NA	intron (NR_046552, intron 1 of 2)	Tigger7|DNA|TcMar-Tigger	-1678	NM_001142279	79621		NM_024570	ENSG00000136104	RNASEH2B	AGS2|DLEU8	ribonuclease H2 subunit B	protein-coding
211934	chr7	112465521	112465900	+	0	NA	intron (NR_120333, intron 7 of 11)	MIRb|SINE|MIR	13652	NM_001197079	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
42857	chr11	73252471	73253650	+	0	NA	Intergenic	Intergenic	-11445	NM_001277205	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
43337	chr11	76506701	76507100	+	0	NA	intron (NM_001300942, intron 10 of 21)	L1ME4b|LINE|L1	61875	NM_020193	56946		NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY transcriptional repressor, BRCA2 interacting	protein-coding
72556	chr15	34436001	34436410	+	0	NA	intron (NM_001368071, intron 1 of 24)	intron (NM_001368071, intron 1 of 24)	1261	NM_001368072	23015		NM_015003	ENSG00000175265	GOLGA8A	CFAP286|FAP286|GM88|GOLGA8B	golgin A8 family member A	protein-coding
88984	chr16	87899601	87899800	+	0	NA	intron (NR_159798, intron 5 of 7)	AluSx1|SINE|Alu	-30193	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
7690	chr1	35929171	35929330	+	0	NA	3' UTR (NM_012199, exon 19 of 19)	3' UTR (NM_012199, exon 19 of 19)	-1855	NM_024852	192669		NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
71152	chr14	105014151	105014650	+	0	NA	intron (NM_017955, intron 1 of 1)	L1MD3|LINE|L1	6683	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
33762	chr10	122525821	122526230	+	0	NA	Intergenic	Intergenic	-34729	NM_001320644	1755		NM_004406	ENSG00000187908	DMBT1	GP340|SAG|SALSA|muclin	deleted in malignant brain tumors 1	protein-coding
118980	chr19	38875571	38875730	+	0	NA	intron (NM_001195833, intron 3 of 11)	AluSq2|SINE|Alu	2625	NM_198445	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
104963	chr17	81965021	81965480	+	0	NA	Intergenic	AluSx|SINE|Alu	-4063	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
228607	chr9	105244121	105246250	+	0	NA	intron (NM_001330731, intron 1 of 15)	CpG	534	NM_080546	23446		NM_022109	ENSG00000070214	SLC44A1	CD92|CDW92|CHTL1|CONATOC|CTL1	solute carrier family 44 member 1	protein-coding
135577	chr2	165902751	165903330	+	0	NA	intron (NM_024753, intron 19 of 28)	intron (NM_024753, intron 19 of 28)	-30817	NR_038984	100506134		NR_038983		TTC21B-AS1	-	TTC21B antisense RNA 1	ncRNA
205579	chr7	21366371	21366530	+	0	NA	Intergenic	Intergenic	-61633	NM_003112	6671		NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding
231492	chr9	131389621	131389880	+	0	NA	intron (NM_001384822, intron 1 of 30)	L2a|LINE|L2	-4336	NM_001384821	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
164184	chr3	56812721	56812980	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-10901	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
35356	chr11	1231271	1231430	+	0	NA	intron (NM_002458, intron 13 of 48)	intron (NM_002458, intron 13 of 48)	8284	NM_002458	727897		NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
27394	chr10	31318051	31321070	+	0	NA	promoter-TSS (NM_001323658)	promoter-TSS (NM_001323658)	-208	NM_001323657	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
190552	chr5	180796201	180796400	+	0	NA	intron (NR_157150, intron 1 of 1)	intron (NR_157150, intron 1 of 1)	6506	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
141991	chr20	1402351	1402450	+	0	NA	Intergenic	LTR3A|LTR|ERVK	-9228	NM_054014	2280		NM_000801	ENSG00000088832	FKBP1A	FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE	FKBP prolyl isomerase 1A	protein-coding
198206	chr6	97282351	97283560	+	0	NA	intron (NM_001350600, intron 1 of 23)	CpG	261	NM_198468	253714		NM_198468	ENSG00000146263	MMS22L	C6orf167|dJ39B17.2	MMS22 like, DNA repair protein	protein-coding
111910	chr19	4690251	4690750	+	0	NA	intron (NR_158699, intron 14 of 22)	intron (NR_158699, intron 14 of 22)	11218	NR_164163	100131094		NR_164163	ENSG00000205790	DPP9-AS1	-	DPP9 antisense RNA 1	ncRNA
151990	chr22	19172951	19173250	+	0	NA	TTS (NR_103767)	TTS (NR_103767)	1394	NR_103767	100652736		NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
56600	chr12	118057471	118057830	+	0	NA	intron (NM_001278557, intron 1 of 8)	L1MA8|LINE|L1	3529	NM_018639	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
183481	chr5	79260021	79260700	+	0	NA	intron (NM_152405, intron 1 of 10)	MER52D|LTR|ERV1	24229	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
172495	chr4	2248121	2248680	+	0	NA	3' UTR (NM_006454, exon 6 of 6)	3' UTR (NM_006454, exon 6 of 6)	1756	NR_039964	100616358		NR_039964	ENSG00000284276	MIR4800	mir-4800	microRNA 4800	ncRNA
211078	chr7	102480121	102480680	+	0	NA	3' UTR (NM_001277335, exon 20 of 20)	3' UTR (NM_001277335, exon 20 of 20)	-1478	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
107151	chr18	35230951	35231310	+	0	NA	Intergenic	Intergenic	-9904	NM_032347	84307		NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
89169	chr16	88542071	88542500	+	0	NA	Intergenic	Intergenic	-11232	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
224017	chr9	2843271	2845000	+	0	NA	promoter-TSS (NM_014878)	promoter-TSS (NM_014878)	-40	NM_014878	9933		NM_014878	ENSG00000080608	PUM3	HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5	pumilio RNA binding family member 3	protein-coding
228957	chr9	113417551	113417650	+	0	NA	intron (NM_001278629, intron 3 of 13)	L2c|LINE|L2	-6851	NM_001278255	54107		NM_017443	ENSG00000148229	POLE3	CHARAC17|CHRAC17|CHRAC2|YBL1|p17	DNA polymerase epsilon 3, accessory subunit	protein-coding
144246	chr20	34512801	34513580	+	0	NA	Intergenic	Intergenic	-2412	NR_168136	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
106741	chr18	23534171	23534330	+	0	NA	intron (NM_000271, intron 23 of 24)	intron (NM_000271, intron 23 of 24)	30739	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
149102	chr21	17090921	17091050	+	0	NA	Intergenic	L1PA3|LINE|L1	-347905	NR_037586	100505929		NM_001005521		LINC01549	C21orf37	long intergenic non-protein coding RNA 1549	ncRNA
219043	chr8	65752051	65752930	+	0	NA	intron (NM_001242318, intron 3 of 12)	L1M7|LINE|L1	36567	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
221709	chr8	127191121	127191400	+	0	NA	intron (NR_120364, intron 1 of 2)	L2b|LINE|L2	6367	NR_120364	103021165		NR_120364		CASC19	CARLO6|CARLo-6|LINC01245	cancer susceptibility 19	ncRNA
150543	chr21	43046271	43046800	+	0	NA	Intergenic	Intergenic	21869	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
119324	chr19	39934651	39935030	+	0	NA	promoter-TSS (NM_003890).2	promoter-TSS (NM_003890).2	-214	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
94807	chr17	31307571	31307730	+	0	NA	intron (NM_006495, intron 1 of 1)	MIR3|SINE|MIR	6404	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
51004	chr12	49669851	49670150	+	0	NA	intron (NM_175736, intron 1 of 25)	intron (NM_175736, intron 1 of 25)	37405	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
178131	chr4	142141151	142141450	+	0	NA	intron (NM_001385459, intron 11 of 18)	L3|LINE|CR1	164532	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
16998	chr1	156006071	156006230	+	0	NA	Intergenic	AluSg|SINE|Alu	14801	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
197501	chr6	75617871	75618030	+	0	NA	intron (NM_015571, intron 1 of 23)	L1MC3|LINE|L1	16070	NM_015571	26054		NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO specific peptidase 6	protein-coding
169888	chr3	177538801	177539580	+	0	NA	intron (NR_047568, intron 1 of 3)	intron (NR_047568, intron 1 of 3)	97269	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
124214	chr19	57099121	57099450	+	0	NA	Intergenic	Intergenic	-20856	NM_020903	57663		NM_020903	ENSG00000131864	USP29	HOM-TES-84/86	ubiquitin specific peptidase 29	protein-coding
21259	chr1	204386101	204387180	+	0	NA	Intergenic	L2a|LINE|L2	-16921	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
25251	chr10	6058801	6059000	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	3467	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
151646	chr22	16660851	16660950	+	0	NA	intron (NR_040115, intron 6 of 8)	L1PA4|LINE|L1	14640	NR_040115	23783		NR_040115		ANKRD62P1-PARP4P3	VWFP1-ANKRD62P1-PARP4P3	ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene	pseudo
84755	chr16	30975401	30975880	+	0	NA	intron (NM_014712, intron 13 of 18)	AluSz|SINE|Alu	-9567	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
122589	chr19	49700571	49701380	+	0	NA	intron (NR_108072, intron 6 of 20)	(CT)n|Simple_repeat|Simple_repeat	9479	NM_001378484	126129		NM_152359	ENSG00000169169	CPT1C	CATL1|CPT I-C|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73	carnitine palmitoyltransferase 1C	protein-coding
233	chr1	876601	876800	+	0	NA	intron (NR_027055, intron 1 of 2)	intron (NR_027055, intron 1 of 2)	102	NR_027055	284593		NR_027055	ENSG00000230368	FAM41C	-	family with sequence similarity 41 member C	ncRNA
64332	chr14	23951771	23951930	+	0	NA	intron (NR_023922, intron 1 of 1)	intron (NR_023922, intron 1 of 1)	-1920	NM_001282987	10901		NM_021004	ENSG00000157326	DHRS4	CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2	dehydrogenase/reductase 4	protein-coding
232051	chr9	133461301	133461500	+	0	NA	intron (NM_017586, intron 1 of 4)	intron (NM_017586, intron 1 of 4)	1422	NM_017586	11094		NM_017586	ENSG00000160325	CACFD1	C9orf7|D9S2135|FLOWER	calcium channel flower domain containing 1	protein-coding
48761	chr12	11416651	11416750	+	0	NA	Intergenic	L1PA4|LINE|L1	-21133	NM_006248	653247		NM_006248	ENSG00000121335	PRB2	IB-9|PRPPRB1|Ps|cP7	proline rich protein BstNI subfamily 2	protein-coding
162398	chr3	48193371	48193730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3014	NR_039645	100616407		NR_039645	ENSG00000265483	MIR4443	mir-4443	microRNA 4443	ncRNA
98237	chr17	46161101	46161930	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	31267	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
154025	chr22	30444471	30444630	+	0	NA	Intergenic	LTR8A|LTR|ERV1	11864	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
15870	chr1	151457571	151459000	+	0	NA	intron (NM_015100, intron 1 of 18)	intron (NM_015100, intron 1 of 18)	1209	NM_001194937	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
17319	chr1	156465351	156465450	+	0	NA	3' UTR (NM_005920, exon 12 of 12)	3' UTR (NM_005920, exon 12 of 12)	25287	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
155423	chr22	38430951	38431100	+	0	NA	intron (NM_152868, intron 1 of 1)	intron (NM_152868, intron 1 of 1)	13003	NM_004981	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
92639	chr17	10145171	10145330	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	53356	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
222166	chr8	132799621	132799880	+	0	NA	intron (NM_016018, intron 6 of 20)	intron (NM_016018, intron 6 of 20)	-23751	NM_001382397	137835		NM_144649	ENSG00000165071	TMEM71	-	transmembrane protein 71	protein-coding
187021	chr5	139763121	139763630	+	0	NA	Intergenic	Intergenic	-17152	NR_105052	101929696		NR_105052		PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA
60180	chr13	40221451	40222680	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1563	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
122660	chr19	49863951	49864500	+	0	NA	exon (NM_007254, exon 6 of 17)	exon (NM_007254, exon 6 of 17)	3351	NM_007254	11284		NM_007254	ENSG00000039650	PNKP	AOA4|CMT2B2|EIEE10|MCSZ|PNK	polynucleotide kinase 3'-phosphatase	protein-coding
100102	chr17	58323451	58323800	+	0	NA	intron (NM_001261835, intron 5 of 31)	intron (NM_001261835, intron 5 of 31)	-1825	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
2514	chr1	9703151	9703630	+	0	NA	intron (NM_001350234, intron 2 of 23)	MLT1K|LTR|ERVL-MaLR	11923	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
204671	chr7	5487711	5489130	+	0	NA	TTS (NM_001321213)	TTS (NM_001321213)	7497	NR_030318	693174		NR_030318	ENSG00000207973	MIR589	MIRN589|hsa-mir-589|mir-589	microRNA 589	ncRNA
64170	chr14	22928601	22930100	+	0	NA	promoter-TSS (NM_001282953)	promoter-TSS (NM_001282953)	26	NM_001282955	10419		NM_006109	ENSG00000100462	PRMT5	HRMT1L5|HSL7|IBP72|JBP1|SKB1|SKB1Hs	protein arginine methyltransferase 5	protein-coding
42190	chr11	67986351	67986730	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	17557	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
179184	chr4	173264521	173265050	+	0	NA	intron (NM_001375601, intron 2 of 8)	intron (NM_001375601, intron 2 of 8)	-3375	NR_036093	100422849		NR_036093	ENSG00000221296	MIR548T	-	microRNA 548t	ncRNA
212770	chr7	129954921	129955230	+	0	NA	Intergenic	AluSg|SINE|Alu	-2115	NM_001202498	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
233638	chrX	724201	724400	+	0	NA	Intergenic	Intergenic	99956	NM_000451	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
7740	chr1	36148501	36150180	+	0	NA	exon (NM_001270894, exon 1 of 5)	exon (NM_001270894, exon 1 of 5)	146	NM_014408	27095		NM_014408	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex subunit 3	protein-coding
99709	chr17	50865001	50865700	+	0	NA	intron (NM_001243877, intron 2 of 2)	intron (NM_001243877, intron 2 of 2)	1004	NM_001243885	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
4328	chr1	20488721	20489130	+	0	NA	Intergenic	Intergenic	-2715	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
42165	chr11	67801201	67801400	+	0	NA	intron (NR_024249, intron 2 of 3)	intron (NR_024249, intron 2 of 3)	4036	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
108527	chr18	74371901	74372300	+	0	NA	Intergenic	L2b|LINE|L2	-37348	NR_131977	101927606		NR_131977	ENSG00000259779	LINC01922	-	long intergenic non-protein coding RNA 1922	ncRNA
223329	chr8	143823901	143824430	+	0	NA	intron (NM_001271099, intron 1 of 10)	intron (NM_001271099, intron 1 of 10)	4876	NM_001362896	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
238529	chrX	153693071	153694180	+	0	NA	intron (NM_005629, intron 7 of 12)	intron (NM_005629, intron 7 of 12)	4114	NM_001142806	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
78727	chr15	98659001	98659520	+	0	NA	intron (NM_000875, intron 1 of 20)	intron (NM_000875, intron 1 of 20)	-8039	NR_126453	104472848		NR_126453		IRAIN	IGF1R-AS|IGF1RAS	IGF1R antisense imprinted non-protein coding RNA	ncRNA
163994	chr3	53157601	53157800	+	0	NA	Intergenic	Intergenic	-3509	NM_006254	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
195535	chr6	37353421	37354700	+	0	NA	promoter-TSS (NM_003958)	promoter-TSS (NM_003958)	77	NR_046399	9025		NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
126534	chr2	28564501	28564700	+	0	NA	intron (NM_153021, intron 18 of 57)	intron (NM_153021, intron 18 of 57)	-1757	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
88074	chr16	81477251	81477350	+	0	NA	intron (NM_198390, intron 1 of 20)	AluSx|SINE|Alu	-18054	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
18029	chr1	160578071	160578530	+	0	NA	intron (NM_003874, intron 1 of 6)	intron (NM_003874, intron 1 of 6)	1196	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
146841	chr20	51420251	51421250	+	0	NA	intron (NM_012340, intron 9 of 10)	L1MC5|LINE|L1	32227	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
182182	chr5	56729721	56729980	+	0	NA	Intergenic	Intergenic	43021	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
63459	chr13	114130601	114131600	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	1523	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
174888	chr4	48830421	48831630	+	0	NA	promoter-TSS (NM_001079840)	promoter-TSS (NM_001079840)	-18	NM_001079841	54940		NM_017830	ENSG00000109180	OCIAD1	ASRIJ|OCIA|TPA018	OCIA domain containing 1	protein-coding
201270	chr6	144198951	144199280	+	0	NA	Intergenic	Intergenic	48598	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
16554	chr1	154966221	154966480	+	0	NA	exon (NM_001130040, exon 8 of 12)	exon (NM_001130040, exon 8 of 12)	4397	NM_001130040	6464		NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding
65393	chr14	50784151	50784880	+	0	NA	intron (NM_020921, intron 5 of 30)	MIR|SINE|MIR	-37282	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
17498	chr1	156732801	156733000	+	0	NA	intron (NM_015997, intron 3 of 7)	intron (NM_015997, intron 3 of 7)	-4134	NM_001370150	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
49682	chr12	30753301	30753600	+	0	NA	exon (NM_001206856, exon 1 of 17)	exon (NM_001206856, exon 1 of 17)	1064	NM_032156	65981		NM_023925	ENSG00000110888	CAPRIN2	C1QDC1|EEG-1|EEG1|RNG140	caprin family member 2	protein-coding
205757	chr7	23514771	23515650	+	0	NA	intron (NM_013293, intron 3 of 7)	intron (NM_013293, intron 3 of 7)	16771	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
135759	chr2	169586121	169587250	+	0	NA	intron (NM_004792, intron 1 of 13)	intron (NM_004792, intron 1 of 13)	2334	NM_004792	9360		NM_004792	ENSG00000138398	PPIG	CARS-Cyp|CYP|SCAF10|SRCyp	peptidylprolyl isomerase G	protein-coding
229136	chr9	114476921	114477180	+	0	NA	intron (NM_015404, intron 2 of 11)	intron (NM_015404, intron 2 of 11)	26165	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
6875	chr1	31296421	31298250	+	0	NA	promoter-TSS (NM_004814)	promoter-TSS (NM_004814)	303	NM_016505	51538		NM_016505	ENSG00000121766	ZCCHC17	HSPC251|PS1D|pNO40	zinc finger CCHC-type containing 17	protein-coding
215348	chr7	157375771	157376600	+	0	NA	intron (NM_001363676, intron 5 of 6)	intron (NM_001363676, intron 5 of 6)	39181	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
190568	chr5	180816551	180817080	+	0	NA	Intergenic	Intergenic	-1199	NM_001364379	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
129630	chr2	70130751	70131050	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5584	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
176169	chr4	83276451	83276950	+	0	NA	intron (NM_015697, intron 2 of 6)	L1PB4|LINE|L1	8098	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
160788	chr3	32955551	32956250	+	0	NA	3' UTR (NM_005508, exon 2 of 2)	3' UTR (NM_005508, exon 2 of 2)	4256	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
156375	chr22	41092301	41093380	+	0	NA	TTS (NR_031694)	TTS (NR_031694)	248	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
17105	chr1	156150421	156151050	+	0	NA	intron (NM_001370568, intron 1 of 13)	intron (NM_001370568, intron 1 of 13)	791	NM_001370571	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
9838	chr1	54198171	54198530	+	0	NA	intron (NM_001353354, intron 1 of 6)	AluY|SINE|Alu	1680	NM_001353353	606495		NM_001031672	ENSG00000215883	CYB5RL	-	cytochrome b5 reductase like	protein-coding
156840	chr22	41954051	41954350	+	0	NA	intron (NR_024355, intron 1 of 1)	MIR|SINE|MIR	2013	NR_024355								
62245	chr13	98538601	98538800	+	0	NA	intron (NM_001286649, intron 1 of 9)	(AC)n|Simple_repeat|Simple_repeat	-16575	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
16042	chr1	152392651	152393350	+	0	NA	Intergenic	Intergenic	21263	NM_016190	49860		NM_016190	ENSG00000143536	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
96189	chr17	39739721	39740400	+	0	NA	promoter-TSS (NM_001242443)	promoter-TSS (NM_001242443)	93	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
181878	chr5	54510951	54511250	+	0	NA	Intergenic	AluSz|SINE|Alu	-6659	NM_001145427	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
138544	chr2	207535021	207535530	+	0	NA	intron (NR_163946, intron 1 of 8)	intron (NR_163946, intron 1 of 8)	5313	NM_134442	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123344	chr19	53864201	53864950	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-1053	NM_001290193	91663		NM_138373	ENSG00000179820	MYADM	SB135	myeloid associated differentiation marker	protein-coding
80496	chr16	2714171	2714630	+	0	NA	intron (NM_001318395, intron 2 of 4)	intron (NM_001318395, intron 2 of 4)	5824	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
18197	chr1	160859751	160860050	+	0	NA	intron (NM_001166664, intron 1 of 7)	AluJb|SINE|Alu	2987	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
6577	chr1	28750801	28751980	+	0	NA	intron (NM_016258, intron 4 of 4)	intron (NM_016258, intron 4 of 4)	14450	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
201543	chr6	149194821	149195330	+	0	NA	Intergenic	Intergenic	-22849	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
24740	chr1	248565621	248566230	+	0	NA	Intergenic	Arthur1C|DNA|hAT-Tip100	-6434	NM_001004697	401993		NM_001004697	ENSG00000203661	OR2T5	OR1-62|OR2T29	olfactory receptor family 2 subfamily T member 5	protein-coding
77483	chr15	84572301	84572900	+	0	NA	intron (NR_038273, intron 2 of 3)	intron (NR_038273, intron 2 of 3)	1466	NR_038273	100506874		NR_038273		LINC00933	-	long intergenic non-protein coding RNA 933	ncRNA
219911	chr8	86159851	86160150	+	0	NA	Intergenic	Intergenic	61090	NM_152565	245972		NM_152565	ENSG00000147614	ATP6V0D2	ATP6D2|VMA6	ATPase H+ transporting V0 subunit d2	protein-coding
189843	chr5	177108801	177109200	+	0	NA	Intergenic	L1M5|LINE|L1	19450	NM_022963	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
200646	chr6	137026351	137026900	+	0	NA	intron (NM_001278724, intron 1 of 5)	intron (NM_001278724, intron 1 of 5)	17687	NM_001278722	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
43203	chr11	75421371	75421950	+	0	NA	TTS (NM_001039548)	TTS (NM_001039548)	8969	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
209578	chr7	77441501	77441900	+	0	NA	Intergenic	Intergenic	-25351	NM_001350896	54103		NM_017439	ENSG00000186088	GSAP	PION	gamma-secretase activating protein	protein-coding
52071	chr12	54038801	54039450	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	5175	NR_030753	693200		NR_030753	ENSG00000207571	MIR615	MIRN615|hsa-mir-615|mir-615	microRNA 615	ncRNA
76286	chr15	74133571	74133730	+	0	NA	exon (NM_020851, exon 3 of 3)	exon (NM_020851, exon 3 of 3)	3064	NM_020851	57611		NM_020851	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine rich repeat 2	protein-coding
100140	chr17	58513171	58513730	+	0	NA	intron (NM_004687, intron 2 of 18)	intron (NM_004687, intron 2 of 18)	1188	NM_001378067	9110		NM_004687	ENSG00000108389	MTMR4	FYVE-DSP2|ZFYVE11	myotubularin related protein 4	protein-coding
139762	chr2	229980771	229981200	+	0	NA	intron (NM_174899, intron 2 of 3)	intron (NM_174899, intron 2 of 3)	-57805	NM_001348335	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
192410	chr6	24853921	24854180	+	0	NA	intron (NM_001286447, intron 8 of 13)	AluJb|SINE|Alu	23220	NM_015864	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
190596	chr5	181153721	181154180	+	0	NA	promoter-TSS (NM_206880)	promoter-TSS (NM_206880)	-993	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
227483	chr9	91162201	91162460	+	0	NA	intron (NR_135306, intron 2 of 2)	intron (NR_135306, intron 2 of 2)	43268	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
234175	chrX	11765651	11765950	+	0	NA	exon (NM_078628, exon 9 of 9)	exon (NM_078628, exon 9 of 9)	6153	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
231456	chr9	131276101	131277600	+	0	NA	promoter-TSS (NM_033387)	promoter-TSS (NM_033387)	-340	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
70371	chr14	101890021	101890350	+	0	NA	intron (NM_178587, intron 5 of 11)	intron (NM_178587, intron 5 of 11)	-74388	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
76073	chr15	72472951	72474600	+	0	NA	promoter-TSS (NM_005744)	promoter-TSS (NM_005744)	464	NR_135678	105370888		NR_135678	ENSG00000261423	TMEM202-AS1	-	TMEM202 antisense RNA 1	ncRNA
229614	chr9	123996701	123997450	+	0	NA	Intergenic	Intergenic	12321	NR_135129	100505588		NR_135129	ENSG00000236668	LHX2-AS1	-	LHX2 antisense RNA 1	ncRNA
226767	chr9	76456151	76457080	+	0	NA	intron (NM_001097634, intron 1 of 2)	intron (NM_001097634, intron 1 of 2)	-2537	NM_001097633	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
66277	chr14	61376751	61376850	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	55357	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
169336	chr3	160006451	160006750	+	0	NA	intron (NR_108088, intron 6 of 9)	intron (NR_108088, intron 6 of 9)	-14049	NR_104132	730109		NR_104132		LINC01100	-	long intergenic non-protein coding RNA 1100	ncRNA
191693	chr6	13614551	13616200	+	0	NA	promoter-TSS (NM_001317724)	promoter-TSS (NM_001317724)	40	NM_016167	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
54154	chr12	76559501	76560550	+	0	NA	promoter-TSS (NM_020841)	promoter-TSS (NM_020841)	-254	NM_001319653	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
70902	chr14	103928271	103928580	+	0	NA	promoter-TSS (NM_153046)	promoter-TSS (NM_153046)	-31	NM_153046	122402		NM_153046	ENSG00000156414	TDRD9	C14orf75|HIG-1|HLS|NET54|SPGF30|SPNE	tudor domain containing 9	protein-coding
25322	chr10	6224701	6225150	+	0	NA	intron (NM_001145443, intron 13 of 14)	intron (NM_001145443, intron 13 of 14)	21993	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
165889	chr3	106209001	106209380	+	0	NA	Intergenic	Intergenic	-339789	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
237873	chrX	130495651	130495750	+	0	NA	non-coding (NR_027141, exon 1 of 1)	non-coding (NR_027141, exon 1 of 1)	759	NR_027141	55855		NM_018472		DENND10P1	FAM45B|FAM45BP|HT011	DENND10 pseudogene 1	pseudo
15666	chr1	150923521	150923930	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2538	NM_001366417	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
147553	chr20	60010671	60011030	+	0	NA	intron (NM_177980, intron 17 of 17)	intron (NM_177980, intron 17 of 17)	14476	NM_021810	60437		NM_021810	ENSG00000124215	CDH26	VR20	cadherin 26	protein-coding
13095	chr1	111603911	111605000	+	0	NA	non-coding (NR_034126, exon 3 of 5)	non-coding (NR_034126, exon 3 of 5)	3863	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
130858	chr2	87397751	87397850	+	0	NA	Intergenic	(CCAAGCCAG)n|Simple_repeat|Simple_repeat	-57627	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
85054	chr16	31963301	31963500	+	0	NA	Intergenic	MER65B|LTR|ERV1	89593	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
149140	chr21	17786951	17787650	+	0	NA	intron (NR_038871, intron 1 of 3)	intron (NR_038871, intron 1 of 3)	5209	NR_038870	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
135931	chr2	171893621	171894850	+	0	NA	promoter-TSS (NM_003705)	promoter-TSS (NM_003705)	9	NM_003705	8604		NM_003705	ENSG00000115840	SLC25A12	AGC1|ARALAR|DEE39|EIEE39	solute carrier family 25 member 12	protein-coding
217821	chr8	37261201	37262250	+	0	NA	Intergenic	Intergenic	232188	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
214747	chr7	151056101	151056500	+	0	NA	intron (NM_004935, intron 5 of 11)	L2a|LINE|L2	1597	NM_001164410	1020		NM_004935	ENSG00000164885	CDK5	LIS7|PSSALRE	cyclin dependent kinase 5	protein-coding
78915	chr15	101198821	101199080	+	0	NA	intron (NM_014918, intron 2 of 2)	intron (NM_014918, intron 2 of 2)	53098	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
191794	chr6	14209801	14210000	+	0	NA	Intergenic	Intergenic	75554	NR_108097	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
143316	chr20	25394171	25394330	+	0	NA	Intergenic	LTR3A|LTR|ERVK	-3415	NM_001042472	26090		NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12	abhydrolase domain containing 12, lysophospholipase	protein-coding
108370	chr18	68714351	68715700	+	0	NA	promoter-TSS (NM_001350516)	promoter-TSS (NM_001350516)	83	NM_001350517	54495		NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
159141	chr3	12656201	12656400	+	0	NA	intron (NM_001354691, intron 1 of 16)	intron (NM_001354691, intron 1 of 16)	7208	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
162487	chr3	48563471	48564480	+	0	NA	promoter-TSS (NM_033199)	promoter-TSS (NM_033199)	-194	NM_033199	90226		NM_033199	ENSG00000145040	UCN2	SRP|UCN-II|UCNI|UR|URP	urocortin 2	protein-coding
200990	chr6	139490051	139490850	+	0	NA	Intergenic	Intergenic	-15854	NR_033919	645434		NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA
226510	chr9	71806301	71807210	+	0	NA	Intergenic	Intergenic	-38242	NM_001349784	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
204358	chr7	2906001	2907100	+	0	NA	3' UTR (NM_001324281, exon 26 of 26)	3' UTR (NM_001324281, exon 26 of 26)	-62242	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
108845	chr18	79186701	79187100	+	0	NA	intron (NM_198531, intron 8 of 29)	intron (NM_198531, intron 8 of 29)	117506	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
229713	chr9	124840551	124840850	+	0	NA	Intergenic	MIR3|SINE|MIR	-12717	NM_001276374	401551		NM_001045476	ENSG00000136918	WDR38	-	WD repeat domain 38	protein-coding
13060	chr1	111455051	111455350	+	0	NA	intron (NM_001688, intron 3 of 6)	intron (NM_001688, intron 3 of 6)	5736	NM_001688	515		NM_001688	ENSG00000116459	ATP5PB	ATP5F1|PIG47	ATP synthase peripheral stalk-membrane subunit b	protein-coding
95326	chr17	35739901	35740300	+	0	NA	intron (NM_033315, intron 2 of 3)	L2b|LINE|L2	8461	NM_033315	91608		NM_033315	ENSG00000270885	RASL10B	RRP17|VTS58635	RAS like family 10 member B	protein-coding
223023	chr8	143314821	143315180	+	0	NA	intron (NM_052963, intron 12 of 13)	LTR13|LTR|ERVK	19880	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
98303	chr17	46238851	46239200	+	0	NA	Intergenic	AluSc8|SINE|Alu	-13658	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
74002	chr15	52078921	52079480	+	0	NA	Intergenic	Intergenic	33575	NM_020396	10017		NM_020396	ENSG00000137875	BCL2L10	BCL-B|Boo|Diva|bcl2-L-10	BCL2 like 10	protein-coding
85542	chr16	53124501	53124900	+	0	NA	intron (NM_001308319, intron 1 of 38)	AluSx|SINE|Alu	-6312	NM_001352127	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
163129	chr3	50132821	50133080	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-22108	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
176237	chr4	86594001	86594880	+	0	NA	5' UTR (NM_006264, exon 1 of 47)	5' UTR (NM_006264, exon 1 of 47)	125	NM_080684	5783		NM_006264	ENSG00000163629	PTPN13	FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E	protein tyrosine phosphatase non-receptor type 13	protein-coding
28314	chr10	46269441	46270800	+	0	NA	promoter-TSS (NR_103827)	promoter-TSS (NR_103827)	-512	NR_103827	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
35417	chr11	1406871	1407030	+	0	NA	intron (NM_001256629, intron 1 of 19)	(TG)n|Simple_repeat|Simple_repeat	-3520	NM_001282218	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
41481	chr11	66219301	66219500	+	0	NA	intron (NM_018026, intron 7 of 23)	intron (NM_018026, intron 7 of 23)	-37894	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
158559	chr3	4492701	4495280	+	0	NA	promoter-TSS (NR_108075)	promoter-TSS (NR_108075)	642	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
45489	chr11	118613651	118613750	+	0	NA	intron (NM_015157, intron 2 of 23)	intron (NM_015157, intron 2 of 23)	6085	NM_001144759	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
175781	chr4	77794751	77795050	+	0	NA	intron (NM_001365006, intron 1 of 11)	L1M5|LINE|L1	24164	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
185544	chr5	131355851	131357050	+	0	NA	intron (NM_001375633, intron 2 of 5)	intron (NM_001375633, intron 2 of 5)	92397	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
161038	chr3	38002321	38002580	+	0	NA	exon (NM_001370265, exon 10 of 16)	exon (NM_001370265, exon 10 of 16)	8312	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
126086	chr2	25822001	25823650	+	0	NA	intron (NM_018263, intron 2 of 11)	intron (NM_018263, intron 2 of 11)	8076	NM_001369346	55252		NM_018263	ENSG00000143970	ASXL2	ASXH2|SHAPNS	ASXL transcriptional regulator 2	protein-coding
3599	chr1	16237901	16238950	+	0	NA	Intergenic	AluJb|SINE|Alu	-1242	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
217327	chr8	27465271	27466080	+	0	NA	intron (NM_001282455, intron 5 of 6)	AluSc|SINE|Alu	13586	NM_000742	1135		NM_000742	ENSG00000120903	CHRNA2	-	cholinergic receptor nicotinic alpha 2 subunit	protein-coding
31350	chr10	93357651	93357950	+	0	NA	intron (NM_133337, intron 28 of 52)	intron (NM_133337, intron 28 of 52)	124534	NM_133337	26509		NM_013451	ENSG00000138119	MYOF	FER1L3|HAE7	myoferlin	protein-coding
217243	chr8	27222351	27222530	+	0	NA	Intergenic	Intergenic	35964	NM_001283055	81551		NM_030795	ENSG00000015592	STMN4	RB3	stathmin 4	protein-coding
193774	chr6	31363451	31363550	+	0	NA	Intergenic	HAL1|LINE|L1	-6321	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
142753	chr20	10469521	10469830	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	34370	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
68006	chr14	75050771	75051930	+	0	NA	intron (NM_014381, intron 1 of 11)	CpG	117	NM_001040108	27030		NM_014381	ENSG00000119684	MLH3	HNPCC7	mutL homolog 3	protein-coding
206128	chr7	27640871	27641030	+	0	NA	intron (NM_152740, intron 2 of 7)	Tigger3a|DNA|TcMar-Tigger	21933	NM_152740	11112		NM_152740	ENSG00000106049	HIBADH	NS5ATP1	3-hydroxyisobutyrate dehydrogenase	protein-coding
65023	chr14	39102551	39104280	+	0	NA	promoter-TSS (NM_006364)	promoter-TSS (NM_006364)	-180	NM_006364	10484		NM_006364	ENSG00000100934	SEC23A	CLSD|hSec23A	SEC23 homolog A, COPII coat complex component	protein-coding
199669	chr6	122462051	122462380	+	0	NA	intron (NM_020755, intron 1 of 9)	L1ME1|LINE|L1	9592	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
75227	chr15	64856601	64857280	+	0	NA	intron (NM_001195059, intron 2 of 4)	intron (NM_001195059, intron 2 of 4)	15025	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
169491	chr3	169767101	169767300	+	0	NA	3' UTR (NM_032487, exon 2 of 2)	3' UTR (NM_032487, exon 2 of 2)	-2140	NR_001566	7012		NR_001566	ENSG00000277925	TERC	DKCA1|PFBMFT2|SCARNA19|TER|TR|TRC3|hTR	telomerase RNA component	ncRNA
166563	chr3	115692851	115693180	+	0	NA	intron (NM_002045, intron 2 of 2)	intron (NM_002045, intron 2 of 2)	69505	NM_001130064	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
180424	chr5	10427871	10428230	+	0	NA	intron (NM_001270660, intron 23 of 24)	AluJr|SINE|Alu	13801	NR_102746	100505845		NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
7672	chr1	35769221	35770830	+	0	NA	promoter-TSS (NM_001190481)	promoter-TSS (NM_001190481)	-47	NM_001330490	63967		NM_022111	ENSG00000092853	CLSPN	-	claspin	protein-coding
197467	chr6	75278501	75278950	+	0	NA	intron (NM_018247, intron 1 of 6)	intron (NM_018247, intron 1 of 6)	6067	NM_018247	55754		NM_018247	ENSG00000112697	TMEM30A	C6orf67|CDC50A	transmembrane protein 30A	protein-coding
143537	chr20	31575601	31575800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2437	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
169760	chr3	172579771	172580130	+	0	NA	intron (NR_146714, intron 2 of 3)	THE1D-int|LTR|ERVL-MaLR	15657	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
202675	chr6	158788801	158790150	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-24722	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
22155	chr1	212158871	212159450	+	0	NA	Intergenic	L2b|LINE|L2	75576	NR_125983	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
44533	chr11	107927871	107928730	+	0	NA	promoter-TSS (NM_017516)	promoter-TSS (NM_017516)	-148	NM_017516	54734		NM_017516	ENSG00000179331	RAB39A	K28|RAB39	RAB39A, member RAS oncogene family	protein-coding
79123	chr16	216171	216330	+	0	NA	intron (NM_018032, intron 3 of 8)	AluSp|SINE|Alu	13199	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
199580	chr6	119052501	119053080	+	0	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	16353	NR_030315	693128		NR_030315	ENSG00000207982	MIR548B	MIRN548B	microRNA 548b	ncRNA
196783	chr6	45658901	45659300	+	0	NA	Intergenic	Intergenic	236825	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
1937	chr1	6493971	6494130	+	0	NA	intron (NM_198681, intron 2 of 21)	AluJb|SINE|Alu	-2383	NM_020631	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
141728	chr2	241863101	241865200	+	0	NA	Intergenic	Intergenic	-5256	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
142654	chr20	5826771	5827130	+	0	NA	intron (NM_001303478, intron 3 of 3)	intron (NM_001303478, intron 3 of 3)	76549	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
193673	chr6	31001971	31002130	+	0	NA	Intergenic	LTR47B3|LTR|ERVL	-3902	NM_001318484	100507679		NM_001198815	ENSG00000261272	MUC22	PBMUCL1	mucin 22	protein-coding
14148	chr1	121097101	121098050	+	0	NA	TTS (NR_045213)	TTS (NR_045213)	690	NR_158169	100996318		NR_158169	ENSG00000233029	LOC100996318	-	uncharacterized LOC100996318	ncRNA
125418	chr2	11757201	11758100	+	0	NA	intron (NM_001349204, intron 2 of 21)	intron (NM_001349204, intron 2 of 21)	9117	NM_001349205	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
5288	chr1	25109271	25110180	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	86222	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
73442	chr15	43225301	43225900	+	0	NA	Intergenic	L2b|LINE|L2	-4582	NM_001114134	2038		NM_000119	ENSG00000166947	EPB42	PA|SPH5	erythrocyte membrane protein band 4.2	protein-coding
6525	chr1	28557121	28557580	+	0	NA	intron (NM_017846, intron 2 of 8)	AluY|SINE|Alu	4265	NM_017846	54952		NM_017846	ENSG00000180098	TRNAU1AP	PRO1902|SECP43|TRSPAP1	tRNA selenocysteine 1 associated protein 1	protein-coding
214592	chr7	150663351	150664380	+	0	NA	Intergenic	Intergenic	-21841	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
188931	chr5	160463771	160463930	+	0	NA	Intergenic	Intergenic	-4401	NR_132748	107075116		NR_132748	ENSG00000253522	MIR3142HG	-	MIR3142 host gene	ncRNA
127395	chr2	41871201	41871400	+	0	NA	Intergenic	U4|snRNA|snRNA	-6255	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
79788	chr16	1385101	1386230	+	0	NA	intron (NM_001372107, intron 9 of 14)	intron (NM_001372107, intron 9 of 14)	-6013	NM_001370526	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
189221	chr5	171484401	171484630	+	0	NA	Intergenic	Intergenic	64868	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
59118	chr13	21325971	21326600	+	0	NA	intron (NR_103840, intron 2 of 5)	intron (NR_103840, intron 2 of 5)	7249	NR_144554	2871		NR_144554		GRK6P1	GPRK6L|GPRK6P|GRK6PS	G protein-coupled receptor kinase 6 pseudogene 1	pseudo
196684	chr6	44741121	44741200	+	0	NA	Intergenic	Intergenic	-189279	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
160294	chr3	27368771	27369930	+	0	NA	promoter-TSS (NM_199347)	promoter-TSS (NM_199347)	33	NM_199347	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
11876	chr1	93145301	93145500	+	0	NA	Intergenic	Intergenic	35013	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
5459	chr1	25622581	25622980	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	5989	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
125685	chr2	20333571	20334230	+	0	NA	intron (NM_001352925, intron 1 of 19)	MSTA|LTR|ERVL-MaLR	-6514	NM_001282790	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
14841	chr1	146368521	146368880	+	0	NA	Intergenic	AluSz|SINE|Alu	-8107	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
142904	chr20	17971521	17971980	+	0	NA	intron (NM_001310339, intron 2 of 2)	intron (NM_001310339, intron 2 of 2)	2732	NM_001310339	92667		NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
121403	chr19	46957101	46957700	+	0	NA	intron (NM_004491, intron 3 of 6)	AluJb|SINE|Alu	-62437	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
91555	chr17	5045371	5046130	+	0	NA	Intergenic	L2c|LINE|L2	-10318	NM_001104577	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
66757	chr14	64519171	64520380	+	0	NA	intron (NR_110550, intron 2 of 3)	AluJo|SINE|Alu	-14562	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
157182	chr22	43033771	43034400	+	0	NA	Intergenic	Intergenic	-4500	NR_125362	100506679		NR_125362	ENSG00000230319	TTLL1-AS1	-	TTLL1 antisense RNA 1	ncRNA
18399	chr1	161409501	161410550	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-42149	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
59811	chr13	30395201	30395850	+	0	NA	Intergenic	Intergenic	-21611	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
209986	chr7	92834801	92836100	+	0	NA	intron (NM_001145306, intron 1 of 7)	CpG-26125	-1033	NR_110086	101927497		NR_110086	ENSG00000237819	CDK6-AS1	BALR-2	CDK6 antisense RNA 1	ncRNA
96387	chr17	40121501	40123000	+	0	NA	5' UTR (NM_001365921, exon 1 of 3)	5' UTR (NM_001365921, exon 1 of 3)	279	NM_001365919	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
183898	chr5	87377271	87377900	+	0	NA	intron (NM_022650, intron 17 of 24)	AluSx|SINE|Alu	35319	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
169517	chr3	170037421	170039380	+	0	NA	intron (NM_014373, intron 1 of 3)	CpG	405	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
53604	chr12	68056321	68056580	+	0	NA	Intergenic	L1PA17|LINE|L1	67005	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
113430	chr19	9794901	9795100	+	0	NA	Intergenic	AluY|SINE|Alu	-1820	NR_148545	100505555		NR_148545	ENSG00000196605	LOC100505555	-	uncharacterized LOC100505555	ncRNA
13473	chr1	114576121	114576480	+	0	NA	intron (NM_005872, intron 3 of 6)	AluJb|SINE|Alu	5315	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
232171	chr9	134171801	134172000	+	0	NA	Intergenic	Intergenic	-7336	NR_023344	100151684		NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear	snRNA
93690	chr17	19369351	19371230	+	0	NA	intron (NM_001368769, intron 1 of 6)	intron (NM_001368769, intron 1 of 6)	-7431	NM_139033	5598		NM_002749	ENSG00000166484	MAPK7	BMK1|ERK4|ERK5|PRKM7	mitogen-activated protein kinase 7	protein-coding
146223	chr20	48798251	48798830	+	0	NA	intron (NM_020820, intron 1 of 39)	L2|LINE|L2	29459	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
151426	chr21	46125221	46125480	+	0	NA	intron (NM_001849, intron 24 of 27)	CpG	-26025	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
69299	chr14	93106401	93106600	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	9425	NM_001142594	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
1619	chr1	3704021	3704480	+	0	NA	intron (NM_001204192, intron 1 of 11)	MER33|DNA|hAT-Charlie	6204	NM_001204192	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
20236	chr1	193311151	193311650	+	0	NA	intron (NR_125789, intron 1 of 3)	intron (NR_125789, intron 1 of 3)	6655	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
146347	chr20	49246221	49247000	+	0	NA	3' UTR (NM_021035, exon 14 of 14)	3' UTR (NM_021035, exon 14 of 14)	27194	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
116862	chr19	18633201	18633850	+	0	NA	Intergenic	Intergenic	-3503	NM_001345984	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
212123	chr7	116230071	116231030	+	0	NA	intron (NM_152829, intron 1 of 6)	intron (NM_152829, intron 1 of 6)	7597	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
181907	chr5	54647701	54647900	+	0	NA	Intergenic	Intergenic	55524	NR_104659	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
197838	chr6	88166421	88166880	+	0	NA	promoter-TSS (NM_001160259)	promoter-TSS (NM_001160259)	2	NM_001370545	1268		NM_016083	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1	protein-coding
13325	chr1	113769901	113770100	+	0	NA	intron (NM_018364, intron 4 of 6)	MLT1L|LTR|ERVL-MaLR	-10112	NM_001323042	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
19793	chr1	182445951	182446350	+	0	NA	Intergenic	Intergenic	-3996	NM_001366934	353299		NM_032267	ENSG00000121446	RGSL1	RGSL|RGSL2	regulator of G protein signaling like 1	protein-coding
56548	chr12	116885301	116885580	+	0	NA	Intergenic	AluJb|SINE|Alu	-3999	NR_073189	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
43726	chr11	86051951	86052250	+	0	NA	intron (NM_001206947, intron 1 of 18)	THE1C|LTR|ERVL-MaLR	16984	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
47524	chr12	4154771	4155400	+	0	NA	Intergenic	L1MC2|LINE|L1	-118677	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
213414	chr7	137950371	137950530	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	-2898	NR_161346	100130880		NR_161346	ENSG00000237243	CREB3L2-AS1	-	CREB3L2 antisense RNA 1	ncRNA
93665	chr17	19216151	19216550	+	0	NA	intron (NR_160286, intron 1 of 3).3	intron (NR_160286, intron 1 of 3).3	720	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
203290	chr6	169868151	169868930	+	0	NA	Intergenic	Intergenic	-69715	NR_026781	401288		NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
94815	chr17	31315771	31316450	+	0	NA	TTS (NM_014210)	TTS (NM_014210)	-2056	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
173523	chr4	9758821	9759280	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-22584	NM_000798	1816		NM_000798	ENSG00000169676	DRD5	DBDR|DRD1B|DRD1L2	dopamine receptor D5	protein-coding
27687	chr10	33125571	33127750	+	0	NA	Intergenic	FRAM|SINE|Alu	-9853	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
57979	chr12	124006401	124007000	+	0	NA	intron (NM_001204298, intron 3 of 4)	intron (NM_001204298, intron 3 of 4)	33485	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
155643	chr22	38973521	38974430	+	0	NA	intron (NM_001193289, intron 4 of 4).2	(TTGCTTT)n|Simple_repeat|Simple_repeat	-8372	NM_004900	9582		NM_004900	ENSG00000179750	APOBEC3B	A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2	apolipoprotein B mRNA editing enzyme catalytic subunit 3B	protein-coding
181657	chr5	50415651	50416950	+	0	NA	intron (NM_198449, intron 2 of 8)	intron (NM_198449, intron 2 of 8)	24988	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
95096	chr17	34562421	34562700	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	16809	NR_160787	400591		NM_207454	ENSG00000197322	TMEM132E-DT	C17orf102	TMEM132E divergent transcript	ncRNA
176010	chr4	82275821	82276500	+	0	NA	Intergenic	Intergenic	97831	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
183866	chr5	87266251	87266600	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-1458	NM_002890	5921		NM_002890	ENSG00000145715	RASA1	CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP	RAS p21 protein activator 1	protein-coding
6827	chr1	31010971	31011430	+	0	NA	intron (NM_014676, intron 3 of 21)	(AC)n|Simple_repeat|Simple_repeat	-42963	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
124842	chr2	7744651	7745880	+	0	NA	Intergenic	L2c|LINE|L2	154390	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
76460	chr15	74842501	74843800	+	0	NA	promoter-TSS (NR_104307)	promoter-TSS (NR_104307)	6	NM_001284365	25989		NM_001099436	ENSG00000140474	ULK3	-	unc-51 like kinase 3	protein-coding
195902	chr6	41726021	41726280	+	0	NA	intron (NM_001167827, intron 1 of 8)	L1ME3B|LINE|L1	7460	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
217570	chr8	29459001	29460030	+	0	NA	Intergenic	Intergenic	-108831	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
52803	chr12	56751351	56753250	+	0	NA	promoter-TSS (NM_000946)	promoter-TSS (NM_000946)	23	NM_000946	5557		NM_000946	ENSG00000198056	PRIM1	PDIL|p49	DNA primase subunit 1	protein-coding
107071	chr18	34336451	34336550	+	0	NA	Intergenic	L1PA2|LINE|L1	-111587	NM_001384473	8715		NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
211158	chr7	102575101	102575680	+	0	NA	Intergenic	AluJr|SINE|Alu	-2769	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
50366	chr12	47211521	47212830	+	0	NA	intron (NR_026544, intron 2 of 2)	AluJb|SINE|Alu	4268	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
36033	chr11	2922351	2922450	+	0	NA	intron (NM_183233, intron 9 of 10)	intron (NM_183233, intron 9 of 10)	7020	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
76108	chr15	72505921	72506450	+	0	NA	intron (NM_005744, intron 1 of 13)	AluY|SINE|Alu	31855	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
30331	chr10	77111901	77112150	+	0	NA	intron (NM_001322836, intron 7 of 27)	intron (NM_001322836, intron 7 of 27)	-28806	NR_120654	101929310		NR_120654	ENSG00000225497	KCNMA1-AS2	-	KCNMA1 antisense RNA 2	ncRNA
39959	chr11	62568551	62568650	+	0	NA	intron (NM_001404, intron 5 of 9)	intron (NM_001404, intron 5 of 9)	-1529	NR_106805	102465447		NR_106805	ENSG00000276102	MIR6747	hsa-mir-6747	microRNA 6747	ncRNA
51835	chr12	53458121	53459000	+	0	NA	intron (NM_031989, intron 5 of 14)	AluSx|SINE|Alu	-5908	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
87221	chr16	69530371	69531550	+	0	NA	Intergenic	Intergenic	34908	NR_031719	100302119		NR_031719	ENSG00000223109	MIR1538	MIRN1538|hsa-mir-1538	microRNA 1538	ncRNA
37546	chr11	18700271	18700430	+	0	NA	intron (NM_153347, intron 1 of 2)	intron (NM_153347, intron 1 of 2)	1571	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
33744	chr10	122416721	122417630	+	0	NA	TTS (NR_037506)	TTS (NR_037506)	210	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
161974	chr3	46298621	46299280	+	0	NA	Intergenic	Intergenic	-54794	NM_001123041	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
90232	chr17	688171	688430	+	0	NA	intron (NM_001128159, intron 4 of 21).2	THE1C|LTR|ERVL-MaLR	26539	NM_018289	55275		NM_018289	ENSG00000141252	VPS53	HCCS1|PCH2E|hVps53L|pp13624	VPS53 subunit of GARP complex	protein-coding
198218	chr6	98831021	98831630	+	0	NA	non-coding (NR_148381, exon 1 of 1)	non-coding (NR_148381, exon 1 of 1)	375	NR_148381	105447646		NR_148381		PNKY	-	long intergenic non-protein coding RNA PNKY	ncRNA
76495	chr15	74931371	74931830	+	0	NA	intron (NM_004255, intron 1 of 4)	AluSz|SINE|Alu	6473	NM_004255	9377		NM_004255	ENSG00000178741	COX5A	COX|COX-VA|MC4DN20|VA	cytochrome c oxidase subunit 5A	protein-coding
76801	chr15	77030821	77031080	+	0	NA	intron (NM_001321135, intron 9 of 13)	intron (NM_001321135, intron 9 of 13)	35824	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
155744	chr22	39172051	39172900	+	0	NA	Intergenic	MIRb|SINE|MIR	-19795	NM_175709	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
195652	chr6	37904051	37904150	+	0	NA	intron (NM_021943, intron 1 of 5)	MER131|DNA?|DNA?	84373	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
188759	chr5	157579221	157579480	+	0	NA	Intergenic	MER21A|LTR|ERVL	-3575	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
130677	chr2	86441901	86444150	+	0	NA	intron (NM_001146688, intron 2 of 25)	intron (NM_001146688, intron 2 of 25)	1564	NM_001146688	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
90454	chr17	1375651	1376530	+	0	NA	intron (NR_024058, intron 1 of 6)	MIR|SINE|MIR	24132	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
200679	chr6	137227701	137228450	+	0	NA	Intergenic	Intergenic	-8690	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
191288	chr6	6589421	6589680	+	0	NA	intron (NM_004271, intron 1 of 4)	intron (NM_004271, intron 1 of 4)	830	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
25092	chr10	3880751	3881050	+	0	NA	Intergenic	AluSx|SINE|Alu	46950	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
72066	chr15	28887021	28887680	+	0	NA	intron (NM_001353788, intron 1 of 14).2	intron (NM_001353788, intron 1 of 14).2	1376	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
167945	chr3	136196301	136197900	+	0	NA	promoter-TSS (NM_018133)	promoter-TSS (NM_018133)	-765	NM_018133	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
80285	chr16	2249301	2249500	+	0	NA	intron (NM_001178029, intron 2 of 6)	L1MB4|LINE|L1	2187	NM_001178029	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
146431	chr20	49612201	49612400	+	0	NA	Intergenic	Intergenic	-44163	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
205700	chr7	23289521	23290100	+	0	NA	Intergenic	Intergenic	-9529	NM_138446	115416		NM_138446	ENSG00000156928	MALSU1	C7orf30|mtRsfA	mitochondrial assembly of ribosomal large subunit 1	protein-coding
45814	chr11	119351171	119351330	+	0	NA	Intergenic	Intergenic	-4545	NM_015645	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
236932	chrX	97583551	97583770	+	0	NA	intron (NM_006729, intron 26 of 26)	L1PA3|LINE|L1	-19125	NR_125391	10824		NR_125391	ENSG00000236256	DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
250	chr1	912271	912430	+	0	NA	Intergenic	MIRb|SINE|MIR	7342	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
37308	chr11	14759471	14760030	+	0	NA	intron (NM_001363569, intron 1 of 15)	AluSc|SINE|Alu	115946	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
7455	chr1	33079521	33079780	+	0	NA	Intergenic	AluJb|SINE|Alu	-1503	NM_001376730	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
103456	chr17	78313651	78314680	+	0	NA	Intergenic	CpG	-35673	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
187186	chr5	140652971	140653130	+	0	NA	exon (NM_006083, exon 5 of 20)	exon (NM_006083, exon 5 of 20)	5206	NR_037428	100500820		NR_037428	ENSG00000284325	MIR3655	-	microRNA 3655	ncRNA
214768	chr7	151085971	151086900	+	0	NA	promoter-TSS (NM_031946)	promoter-TSS (NM_031946)	-40	NM_001350102	116988		NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
160972	chr3	37162521	37163600	+	0	NA	intron (NM_001348298, intron 2 of 21)	intron (NM_001348298, intron 2 of 21)	11522	NM_006309	9209		NM_006309	ENSG00000093167	LRRFIP2	HUFI-2	LRR binding FLII interacting protein 2	protein-coding
129937	chr2	73788901	73789130	+	0	NA	intron (NM_001080474, intron 1 of 2)	intron (NM_001080474, intron 1 of 2)	4826	NM_001080474	388960		NM_001080474	ENSG00000187833	C2orf78	COG5373|hCG1989538	chromosome 2 open reading frame 78	protein-coding
198120	chr6	90396201	90396530	+	0	NA	Intergenic	Intergenic	83623	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
128227	chr2	54106901	54107250	+	0	NA	intron (NM_001320586, intron 4 of 6)	intron (NM_001320586, intron 4 of 6)	-8540	NM_001320590	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
186818	chr5	139391831	139393700	+	0	NA	exon (NM_001161546, exon 1 of 1)	exon (NM_001161546, exon 1 of 1)	2339	NM_001161546	389333		NM_001161546	ENSG00000228672	PROB1	C5orf65	proline rich basic protein 1	protein-coding
128343	chr2	54767951	54768050	+	0	NA	intron (NM_001039753, intron 1 of 40)	intron (NM_001039753, intron 1 of 40)	42988	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133543	chr2	120314321	120314820	+	0	NA	Intergenic	Intergenic	-31566	NM_002193	3625		NM_002193	ENSG00000163083	INHBB	-	inhibin subunit beta B	protein-coding
18691	chr1	167427371	167427730	+	0	NA	TTS (NR_037163)	TTS (NR_037163)	90979	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
156430	chr22	41230701	41230900	+	0	NA	3' UTR (NM_031488, exon 17 of 17)	3' UTR (NM_031488, exon 17 of 17)	10131	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
43522	chr11	82073471	82073700	+	0	NA	intron (NR_120571, intron 5 of 7)	L2c|LINE|L2	-182749	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
106234	chr18	11937501	11938150	+	0	NA	Intergenic	Intergenic	-29508	NR_040242	65258		NM_023075	ENSG00000154889	MPPE1	Cdc1|PGAP5	metallophosphoesterase 1	protein-coding
19438	chr1	174413951	174414450	+	0	NA	intron (NM_001366447, intron 13 of 20)	Tigger2b_Pri|DNA|TcMar-Tigger	-33764	NM_005684	9293		NM_005684	ENSG00000203737	GPR52	-	G protein-coupled receptor 52	protein-coding
70861	chr14	103711551	103712830	+	0	NA	intron (NM_001371231, intron 2 of 9)	intron (NM_001371231, intron 2 of 9)	3261	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
37742	chr11	31812671	31813580	+	0	NA	promoter-TSS (NM_001258463)	promoter-TSS (NM_001258463)	-405	NM_001368890	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
161127	chr3	38426701	38427100	+	0	NA	non-coding (NR_146068, exon 17 of 17)	non-coding (NR_146068, exon 17 of 17)	-26990	NM_001106	93		NM_001106	ENSG00000114739	ACVR2B	ACTRIIB|ActR-IIB|HTX4	activin A receptor type 2B	protein-coding
120173	chr19	42252371	42252900	+	0	NA	intron (NM_001312656, intron 1 of 3)	intron (NM_001312656, intron 1 of 3)	1264	NM_001308402	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
226748	chr9	76032521	76032980	+	0	NA	intron (NM_006200, intron 5 of 20)	intron (NM_006200, intron 5 of 20)	142077	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
228024	chr9	95877601	95878400	+	0	NA	intron (NM_001375291, intron 1 of 18)	L2a|LINE|L2	-2023	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
38521	chr11	45894051	45894150	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	8449	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
88246	chr16	82454101	82454900	+	0	NA	Intergenic	Intergenic	-172469	NM_001257	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
35650	chr11	1852501	1853400	+	0	NA	promoter-TSS (NM_002339)	promoter-TSS (NM_002339)	-134	NM_002339	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
221570	chr8	125152801	125153000	+	0	NA	intron (NM_173685, intron 4 of 7)	AluSx|SINE|Alu	61040	NM_173685	286053		NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein-coding
91448	chr17	4788321	4788780	+	0	NA	promoter-TSS (NM_001014985)	promoter-TSS (NM_001014985)	-414	NM_001375801	388323		NM_001014985	ENSG00000182327	GLTPD2	-	glycolipid transfer protein domain containing 2	protein-coding
227158	chr9	86352171	86352930	+	0	NA	intron (NM_024617, intron 2 of 26)	intron (NM_024617, intron 2 of 26)	1860	NM_001185074	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
64527	chr14	24433571	24433880	+	0	NA	intron (NM_015299, intron 5 of 7)	MIRc|SINE|MIR	3771	NM_015299	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
190825	chr6	1534601	1534830	+	0	NA	Intergenic	Intergenic	-70816	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
206037	chr7	27094771	27094930	+	0	NA	intron (NM_153620, intron 2 of 2)	intron (NM_153620, intron 2 of 2)	1150	NM_005522	3198		NM_005522	ENSG00000105991	HOXA1	BSAS|HOX1|HOX1F	homeobox A1	protein-coding
136039	chr2	172484101	172484680	+	0	NA	intron (NM_001316306, intron 11 of 25)	intron (NM_001316306, intron 11 of 25)	-18368	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
70400	chr14	101968951	101969250	+	0	NA	intron (NM_001376, intron 1 of 77)	AluY|SINE|Alu	4527	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
132695	chr2	108968671	108969030	+	0	NA	intron (NM_022336, intron 1 of 11)	LTR37B|LTR|ERV1	20370	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
56306	chr12	112418351	112420180	+	0	NA	promoter-TSS (NM_001320141)	promoter-TSS (NM_001320141)	318	NM_001330437	5781		NM_002834	ENSG00000179295	PTPN11	BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2	protein tyrosine phosphatase non-receptor type 11	protein-coding
167671	chr3	130001771	130002100	+	0	NA	Intergenic	Intergenic	27215	NM_007117	7200		NM_007117	ENSG00000170893	TRH	Pro-TRH|TRF	thyrotropin releasing hormone	protein-coding
33056	chr10	110870621	110872200	+	0	NA	promoter-TSS (NR_026932)	promoter-TSS (NR_026932)	-385	NM_145341	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
180209	chr5	1508971	1509130	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	1806	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
70168	chr14	100317851	100318950	+	0	NA	Intergenic	Intergenic	-4939	NM_207117	283600		NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDCMP|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding
218295	chr8	42389951	42390250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1661	NM_001135694	7419		NM_005662	ENSG00000078668	VDAC3	HD-VDAC3|VDAC-3	voltage dependent anion channel 3	protein-coding
45037	chr11	117035521	117036100	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	62618	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
106380	chr18	13308371	13308950	+	0	NA	intron (NM_001378099, intron 2 of 6)	L1ME4b|LINE|L1	-29943	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
136333	chr2	175180721	175182150	+	0	NA	5' UTR (NM_001190329, exon 2 of 4)	5' UTR (NM_001190329, exon 2 of 4)	275	NM_001689	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
167358	chr3	128769901	128770300	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSg|SINE|Alu	43917	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
237091	chrX	103941451	103941800	+	0	NA	intron (NM_001350211, intron 1 of 3)	L1ME3B|LINE|L1	-20972	NM_001350212	286527		NM_194324	ENSG00000158427	TMSB15B	TMSB15A|TMSL8|TMSNB|Tbeta15b	thymosin beta 15B	protein-coding
221243	chr8	122504401	122504600	+	0	NA	intron (NR_131202, intron 2 of 3)	intron (NR_131202, intron 2 of 3)	64144	NR_131202	105375734		NR_131202		SMILR	-	smooth muscle induced lncRNA, enhancer of proliferation	ncRNA
190547	chr5	180785951	180786450	+	0	NA	3' UTR (NM_002406, exon 2 of 2)	3' UTR (NM_002406, exon 2 of 2)	16606	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
229278	chr9	120619771	120620200	+	0	NA	intron (NM_001080497, intron 3 of 5)	intron (NM_001080497, intron 3 of 5)	-39815	NM_001272039	55755		NM_018249	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
56455	chr12	114798521	114798650	+	0	NA	Intergenic	Intergenic	-114410	NM_005996	6926		NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box transcription factor 3	protein-coding
215367	chr7	157396971	157397480	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	60221	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
30639	chr10	80456071	80456450	+	0	NA	intron (NM_001128309, intron 1 of 5)	intron (NM_001128309, intron 1 of 5)	1950	NM_001351266	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
12946	chr1	110783121	110783630	+	0	NA	Intergenic	Intergenic	-87824	NM_001040033	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
192829	chr6	27128171	27129530	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	3945	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
168993	chr3	152418471	152419000	+	0	NA	intron (NM_207295, intron 3 of 8)	AluY|SINE|Alu	-77745	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
221327	chr8	123084171	123084750	+	0	NA	intron (NM_145647, intron 4 of 21)	intron (NM_145647, intron 4 of 21)	11211	NM_001363149	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
130699	chr2	86583971	86584550	+	0	NA	intron (NM_001198954, intron 3 of 7)	L1MEc|LINE|L1	-20817	NR_036454	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
200697	chr6	137342821	137343200	+	0	NA	Intergenic	Intergenic	-123625	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
29421	chr10	70239351	70239650	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-6071	NM_021129	5464		NM_021129	ENSG00000180817	PPA1	HEL-S-66p|IOPPP|PP|PP1|SID6-8061	inorganic pyrophosphatase 1	protein-coding
161292	chr3	39331351	39332250	+	0	NA	intron (NM_005201, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	2091	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
182205	chr5	56834271	56834630	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	18901	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
108435	chr18	69967871	69968450	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-11361	NM_006566	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
101638	chr17	68238601	68239980	+	0	NA	intron (NM_001346472, intron 2 of 7)	intron (NM_001346472, intron 2 of 7)	-8284	NM_001346474	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
47216	chr12	870371	871080	+	0	NA	intron (NM_001184985, intron 9 of 27)	MER20|DNA|hAT-Charlie	62351	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
195427	chr6	36947701	36948500	+	0	NA	promoter-TSS (NM_001199159)	promoter-TSS (NM_001199159)	-163	NM_001199159	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
46413	chr11	126357671	126358030	+	0	NA	intron (NM_006278, intron 1 of 10)	intron (NM_006278, intron 1 of 10)	1838	NM_001348397	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
202941	chr6	160733071	160733270	+	0	NA	intron (NM_000301, intron 12 of 18)	MER21C|LTR|ERVL	30926	NM_000301	5340		NM_000301	ENSG00000122194	PLG	HAE4	plasminogen	protein-coding
84259	chr16	30028551	30029200	+	0	NA	intron (NM_031478, intron 2 of 4)	intron (NM_031478, intron 2 of 4)	1209	NM_001318504	83723		NM_031478	ENSG00000149926	TLCD3B	CORD22|FAM57B|FP1188	TLC domain containing 3B	protein-coding
228942	chr9	113350701	113351300	+	0	NA	intron (NM_001317944, intron 1 of 4)	MIRc|SINE|MIR	1459	NM_001317943	54836		NM_017688	ENSG00000119411	BSPRY	-	B-box and SPRY domain containing	protein-coding
38670	chr11	46393851	46394330	+	0	NA	Intergenic	AluSz|SINE|Alu	-2314	NM_000741	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
21755	chr1	206901201	206901630	+	0	NA	intron (NM_001185157, intron 4 of 5)	intron (NM_001185157, intron 4 of 5)	3972	NM_006850	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
25104	chr10	3942121	3943130	+	0	NA	Intergenic	Intergenic	-48535	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
111395	chr19	3758871	3759030	+	0	NA	intron (NM_004886, intron 3 of 10)	AluJb|SINE|Alu	2742	NM_004886	9546		NM_004886	ENSG00000011132	APBA3	MGC:15815|X11L2|mint3	amyloid beta precursor protein binding family A member 3	protein-coding
151315	chr21	45552921	45553230	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	9950	NM_001352511	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
102191	chr17	75165271	75165430	+	0	NA	TTS (NM_001005849)	TTS (NM_001005849)	-10838	NM_001002033	51155		NM_016185	ENSG00000189159	JPT1	ARM2|HN1|HN1A	Jupiter microtubule associated homolog 1	protein-coding
128192	chr2	53952651	53952950	+	0	NA	intron (NM_014614, intron 1 of 46)	MER1B|DNA|hAT-Charlie	18193	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
177455	chr4	113616551	113617200	+	0	NA	intron (NM_172129, intron 3 of 17)	intron (NM_172129, intron 3 of 17)	144863	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
83711	chr16	28498051	28498630	+	0	NA	exon (NM_018690, exon 3 of 4)	exon (NM_018690, exon 3 of 4)	3697	NM_018690	55911		NM_018690	ENSG00000184730	APOBR	APOB100R|APOB48R	apolipoprotein B receptor	protein-coding
153862	chr22	30242101	30242700	+	0	NA	3' UTR (NM_002309, exon 3 of 3)	3' UTR (NM_002309, exon 3 of 3)	3206	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
189433	chr5	172916901	172917300	+	0	NA	intron (NM_001031711, intron 5 of 9)	L2a|LINE|L2	2017	NR_162113	113218510		NR_162113		MIR10523	-	microRNA 10523	ncRNA
39085	chr11	48001101	48002700	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	21341	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
214796	chr7	151169101	151169300	+	0	NA	Intergenic	(CAAGA)n|Simple_repeat|Simple_repeat	-1652	NM_001098834	2636		NM_001098834	ENSG00000164900	GBX1	Huh-17	gastrulation brain homeobox 1	protein-coding
77444	chr15	84235651	84236100	+	0	NA	exon (NM_001267536, exon 1 of 9)	exon (NM_001267536, exon 1 of 9)	102	NM_001267536	643707		NM_001267536	ENSG00000184206	GOLGA6L4	-	golgin A6 family like 4	protein-coding
7181	chr1	32263551	32264300	+	0	NA	intron (NM_005356, intron 1 of 12)	AluJb|SINE|Alu	-10186	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
9395	chr1	47434701	47435730	+	0	NA	promoter-TSS (NR_026878)	promoter-TSS (NR_026878)	-574	NR_026878	84793		NM_032707	ENSG00000237424	FOXD2-AS1	-	FOXD2 adjacent opposite strand RNA 1	ncRNA
206210	chr7	28407801	28408000	+	0	NA	intron (NM_182899, intron 1 of 9)	AmnSINE1|SINE|5S-Deu-L2	-4618	NM_182898	9586		NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5|CREBPA	cAMP responsive element binding protein 5	protein-coding
56937	chr12	120463521	120463780	+	0	NA	TTS (NR_033684)	TTS (NR_033684)	6098	NM_003769	8683		NM_003769	ENSG00000111786	SRSF9	SFRS9|SRp30c	serine and arginine rich splicing factor 9	protein-coding
216494	chr8	20231721	20232480	+	0	NA	Intergenic	Intergenic	34719	NM_001693	526		NM_001693	ENSG00000147416	ATP6V1B2	ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2	ATPase H+ transporting V1 subunit B2	protein-coding
181422	chr5	40797401	40798830	+	0	NA	promoter-TSS (NM_001355029)	promoter-TSS (NM_001355029)	62	NM_001355037	5562		NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPK alpha 1|AMPKa1	protein kinase AMP-activated catalytic subunit alpha 1	protein-coding
57602	chr12	122466801	122467000	+	0	NA	Intergenic	MER41A|LTR|ERV1	34032	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
158385	chr22	50502401	50502730	+	0	NA	TTS (NM_001363816)	TTS (NM_001363816)	5137	NM_033200	91289		NM_033200	ENSG00000100258	LMF2	TMEM112B|TMEM153	lipase maturation factor 2	protein-coding
133270	chr2	113499101	113500480	+	0	NA	exon (NM_012184, exon 1 of 1)	exon (NM_012184, exon 1 of 1)	706	NM_012184	200350		NM_012184	ENSG00000184492	FOXD4L1	FOXD5|bA395L14.1	forkhead box D4 like 1	protein-coding
128049	chr2	47753011	47753430	+	0	NA	Intergenic	Intergenic	-29862	NM_001281493	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
173090	chr4	6269171	6271100	+	0	NA	intron (NM_001145853, intron 1 of 7)	CpG	285	NM_006005	7466		NM_006005	ENSG00000109501	WFS1	CTRCT41|WFRS|WFS|WFSL	wolframin ER transmembrane glycoprotein	protein-coding
79316	chr16	561521	562700	+	0	NA	intron (NM_145270, intron 1 of 2)	intron (NM_145270, intron 1 of 2)	1716	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
117403	chr19	19618151	19619680	+	0	NA	promoter-TSS (NR_038198)	promoter-TSS (NR_038198)	-228	NR_038198	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
238738	chrX	154308171	154308830	+	0	NA	intron (NM_001145933, intron 2 of 12)	L2a|LINE|L2	3330	NM_001145934	8277		NM_012253	ENSG00000007350	TKTL1	TKR|TKT2	transketolase like 1	protein-coding
27181	chr10	28550851	28550950	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	17782	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
183659	chr5	80284721	80284980	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	15628	NR_004845	644936		NR_004845		LOC644936	-	actin beta pseudogene	pseudo
171070	chr3	195440371	195440750	+	0	NA	intron (NM_012287, intron 1 of 22)	intron (NM_012287, intron 1 of 22)	2460	NM_012287	23527		NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
99217	chr17	49574071	49574630	+	0	NA	promoter-TSS (NR_103773)	promoter-TSS (NR_103773)	-286	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
61693	chr13	74055671	74055830	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	78179	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
215955	chr8	8387771	8388430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1661	NR_163138	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
218413	chr8	47574371	47574730	+	0	NA	intron (NM_001352958, intron 10 of 21)	AluSx1|SINE|Alu	-79538	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
3370	chr1	15620151	15620800	+	0	NA	intron (NM_032341, intron 1 of 9)	intron (NM_032341, intron 1 of 9)	3017	NM_032341	84301		NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
178524	chr4	150962071	150962680	+	0	NA	intron (NM_001367550, intron 2 of 56)	AluJb|SINE|Alu	52892	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
139566	chr2	224937621	224938200	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	9139	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
76962	chr15	78147771	78148280	+	0	NA	Intergenic	Intergenic	-1337	NM_005530	3419		NM_005530	ENSG00000166411	IDH3A	RP90	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein-coding
131290	chr2	96104421	96105130	+	0	NA	Intergenic	Intergenic	11796	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
50876	chr12	49190451	49190550	+	0	NA	Intergenic	Intergenic	-1176	NM_001270400	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
183909	chr5	87387321	87387780	+	0	NA	intron (NM_022650, intron 23 of 24)	intron (NM_022650, intron 23 of 24)	25354	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
34345	chr10	132194221	132194680	+	0	NA	intron (NM_006426, intron 3 of 13)	intron (NM_006426, intron 3 of 13)	7502	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
190792	chr6	721971	722350	+	0	NA	Intergenic	Intergenic	-29019	NR_073064	55770		NM_018303	ENSG00000112685	EXOC2	NEDFACH|SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
81033	chr16	4282621	4282880	+	0	NA	Intergenic	FRAM|SINE|Alu	-9727	NM_003223	7023		NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding
20125	chr1	192538651	192539580	+	0	NA	Intergenic	Intergenic	-36658	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
152186	chr22	20104851	20105150	+	0	NA	intron (NM_022720, intron 9 of 13)	intron (NM_022720, intron 9 of 13)	9751	NR_106874	102465490		NR_106874	ENSG00000278278	MIR6816	hsa-mir-6816	microRNA 6816	ncRNA
27888	chr10	41876151	41876250	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	491845	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
215605	chr7	159070771	159070930	+	0	NA	intron (NR_130758, intron 4 of 12)	intron (NR_130758, intron 4 of 12)	26354	NM_001308259	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
113375	chr19	8766351	8766650	+	0	NA	Intergenic	Intergenic	35546	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
38409	chr11	44977501	44978280	+	0	NA	non-coding (NR_026681, exon 4 of 4)	non-coding (NR_026681, exon 4 of 4)	3988	NR_026681	221122		NR_026681	ENSG00000254654	LINC02685	-	long intergenic non-protein coding RNA 2685	ncRNA
239189	chrY	12662901	12663950	+	0	NA	intron (NR_001545, intron 1 of 3)	intron (NR_001545, intron 1 of 3)	1058	NR_001545	64595		NR_001545	ENSG00000114374	TTTY15	NCRNA00138	testis expressed transcript, Y-linked 15	ncRNA
109187	chr19	376921	377480	+	0	NA	Intergenic	Intergenic	-1174	NM_016585	51298		NM_016585	ENSG00000105549	SPMAP2	CT56|THEG|THEG1	sperm microtubule associated protein 2	protein-coding
113840	chr19	10631221	10631480	+	0	NA	exon (NM_001145056, exon 6 of 22)	exon (NM_001145056, exon 6 of 22)	5797	NM_020428	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
211483	chr7	105125051	105125350	+	0	NA	intron (NM_001350746, intron 14 of 14)	intron (NM_001350746, intron 14 of 14)	110995	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
82005	chr16	11910601	11911030	+	0	NA	intron (NM_001130007, intron 1 of 14)	intron (NM_001130007, intron 1 of 14)	5141	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
95113	chr17	34980171	34981680	+	0	NA	intron (NM_013975, intron 1 of 19)	CpG	413	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
98061	chr17	45463201	45463600	+	0	NA	intron (NR_027782, intron 4 of 10)	AluSx|SINE|Alu	12035	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
215861	chr8	7448151	7448580	+	0	NA	intron (NM_058202, intron 2 of 2)	intron (NM_058202, intron 2 of 2)	4000	NM_058207	10407		NM_016512	ENSG00000164871	SPAG11B	EDDM2B|EP2|EP2C|EP2D|HE2|HE2C|SPAG11|SPAG11A	sperm associated antigen 11B	protein-coding
134691	chr2	144486601	144486800	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-32914	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
221821	chr8	128045071	128045230	+	0	NA	intron (NR_003367, intron 5 of 8)	intron (NR_003367, intron 5 of 8)	-4002	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
236164	chrX	64850771	64850930	+	0	NA	Intergenic	LTR21C|LTR|ERVL	125600	NM_018684	55906		NM_018684	ENSG00000126970	ZC4H2	HCA127|KIAA1166|MCS|MRXS4|WRWF|WRWFFR|WWS	zinc finger C4H2-type containing	protein-coding
163272	chr3	50304421	50305280	+	0	NA	intron (NM_153281, intron 2 of 5)	intron (NM_153281, intron 2 of 5)	-1276	NM_153282	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
216006	chr8	8942601	8942880	+	0	NA	Intergenic	Intergenic	-49110	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
94540	chr17	29581851	29582150	+	0	NA	exon (NM_014030, exon 5 of 20)	exon (NM_014030, exon 5 of 20)	7648	NM_014030	28964		NM_014030	ENSG00000108262	GIT1	p95-APP1	GIT ArfGAP 1	protein-coding
84779	chr16	31005851	31006550	+	0	NA	intron (NM_052874, intron 1 of 9)	intron (NM_052874, intron 1 of 9)	4438	NM_052874	112755		NM_052874	ENSG00000099365	STX1B	GEFSP9|STX1B1|STX1B2	syntaxin 1B	protein-coding
21275	chr1	204405921	204406180	+	0	NA	3' UTR (NM_032833, exon 2 of 2)	3' UTR (NM_032833, exon 2 of 2)	5767	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
14724	chr1	145971851	145972150	+	0	NA	intron (NM_032305, intron 1 of 7)	L1MD3|LINE|L1	7310	NM_032305	84265		NM_032305	ENSG00000121851	POLR3GL	RPC32HOM|SOFM|flj32422	RNA polymerase III subunit GL	protein-coding
85746	chr16	56708501	56709530	+	0	NA	Intergenic	Intergenic	-21114	NM_014669	9688		NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
166914	chr3	125010271	125010680	+	0	NA	exon (NM_020733, exon 7 of 17)	exon (NM_020733, exon 7 of 17)	45522	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
146368	chr20	49272121	49272850	+	0	NA	intron (NM_021035, intron 2 of 13)	MIR|SINE|MIR	5572	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
140187	chr2	231670971	231671730	+	0	NA	Intergenic	Intergenic	-37175	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
184201	chr5	95870451	95870780	+	0	NA	Intergenic	Intergenic	18383	NR_026936	202299		NM_175616	ENSG00000236882	LINC01554	C5orf27|FIS	long intergenic non-protein coding RNA 1554	ncRNA
124432	chr19	58475421	58477700	+	0	NA	promoter-TSS (NM_001304453)	promoter-TSS (NM_001304453)	208	NM_017908	55663		NM_017908	ENSG00000083838	ZNF446	ZKSCAN20|ZSCAN30|ZSCAN52	zinc finger protein 446	protein-coding
11366	chr1	89636021	89636730	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	3255	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
107893	chr18	56702901	56703200	+	0	NA	intron (NM_052834, intron 12 of 26)	intron (NM_052834, intron 12 of 26)	51353	NM_001382485	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
128076	chr2	47869721	47870150	+	0	NA	intron (NM_001190274, intron 1 of 22)	AluSx|SINE|Alu	18784	NM_025133	80204		NM_012167	ENSG00000138081	FBXO11	FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding
206804	chr7	36871771	36872200	+	0	NA	intron (NM_014800, intron 19 of 21)	intron (NM_014800, intron 19 of 21)	47447	NR_031604	100302113		NR_031604	ENSG00000221325	MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA
204945	chr7	6318021	6318280	+	0	NA	Intergenic	Intergenic	30817	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
73940	chr15	51649901	51650200	+	0	NA	Intergenic	Intergenic	-27279	NR_165648	23312		NM_015263	ENSG00000104093	DMXL2	DEE81|DFNA71|EIEE81|PEPNS|RC3	Dmx like 2	protein-coding
154364	chr22	33544821	33545080	+	0	NA	intron (NM_133642, intron 6 of 14)	MLT1K|LTR|ERVL-MaLR	27312	NM_001378631	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
41790	chr11	66857721	66857980	+	0	NA	exon (NM_024036, exon 1 of 2)	exon (NM_024036, exon 1 of 2)	786	NM_001363524	78999		NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
10835	chr1	77951571	77951930	+	0	NA	intron (NR_146539, intron 18 of 22)	intron (NR_146539, intron 18 of 22)	27322	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
157205	chr22	43148621	43149030	+	0	NA	Intergenic	Intergenic	-2734	NR_046308	706		NM_000714	ENSG00000100300	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|TSPO1|mDRC|pk18	translocator protein	protein-coding
141539	chr2	241313121	241313380	+	0	NA	intron (NM_005336, intron 1 of 27)	L2c|LINE|L2	-1937	NM_006155	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
33783	chr10	123010751	123011550	+	0	NA	intron (NM_001330174, intron 1 of 9)	intron (NM_001330174, intron 1 of 9)	2144	NM_001330174	36		NM_001609	ENSG00000196177	ACADSB	2-MEBCAD|ACAD7|SBCAD	acyl-CoA dehydrogenase short/branched chain	protein-coding
198773	chr6	108839301	108839780	+	0	NA	Intergenic	Intergenic	-8876	NM_001286609	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
130970	chr2	87549321	87549580	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	79500	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
199856	chr6	127781771	127782330	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L1P2|LINE|L1	73138	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
146396	chr20	49295801	49296200	+	0	NA	Intergenic	Intergenic	15317	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
1986	chr1	6624051	6624150	+	0	NA	promoter-TSS (NM_001195753)	promoter-TSS (NM_001195753)	-765	NM_001195753	90326		NM_138350	ENSG00000041988	THAP3	-	THAP domain containing 3	protein-coding
143425	chr20	29787321	29787580	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-92934	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
223590	chr8	144293371	144293530	+	0	NA	intron (NM_005526, intron 1 of 12)	AluSz|SINE|Alu	1846	NM_005526	3297		NM_005526	ENSG00000185122	HSF1	HSTF1	heat shock transcription factor 1	protein-coding
238390	chrX	150365341	150366330	+	0	NA	intron (NM_001177465, intron 1 of 4)	intron (NM_001177465, intron 1 of 4)	2518	NM_001177465	10046		NM_005491	ENSG00000013619	MAMLD1	CG1|CXorf6|F18|HYSP2	mastermind like domain containing 1	protein-coding
175302	chr4	68266121	68266380	+	0	NA	Intergenic	MER49|LTR|ERV1	-20556	NM_182502	132724		NM_182502	ENSG00000185873	TMPRSS11B	HATL5	transmembrane serine protease 11B	protein-coding
230018	chr9	127162101	127162500	+	0	NA	intron (NM_001190729, intron 8 of 17)	L2b|LINE|L2	-39665	NM_012098	23452		NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
91626	chr17	5398421	5398850	+	0	NA	intron (NM_002532, intron 8 of 16)	AluSc|SINE|Alu	-21006	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
48822	chr12	12266651	12267700	+	0	NA	promoter-TSS (NM_002336)	promoter-TSS (NM_002336)	-131	NM_002336	4040		NM_002336	ENSG00000070018	LRP6	ADCAD2|STHAG7	LDL receptor related protein 6	protein-coding
41765	chr11	66720221	66720480	+	0	NA	intron (NM_006946, intron 3 of 37)	intron (NM_006946, intron 3 of 37)	8866	NM_006946	6712		NM_006946	ENSG00000173898	SPTBN2	GTRAP41|SCA5|SCAR14	spectrin beta, non-erythrocytic 2	protein-coding
48993	chr12	13211871	13212430	+	0	NA	intron (NM_001423, intron 2 of 4)	intron (NM_001423, intron 2 of 4)	15424	NM_001423	2012		NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
119065	chr19	39129851	39130330	+	0	NA	intron (NM_001014834, intron 1 of 7)	intron (NM_001014834, intron 1 of 7)	4304	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
5364	chr1	25361471	25361830	+	0	NA	TTS (NM_001330430)	TTS (NM_001330430)	23316	NM_014313	23585		NM_014313	ENSG00000183726	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
120720	chr19	45322771	45323130	+	0	NA	promoter-TSS (NM_001824)	promoter-TSS (NM_001824)	-75	NM_001824	1158		NM_001824	ENSG00000104879	CKM	CKMM|CPK-M|M-CK	creatine kinase, M-type	protein-coding
78630	chr15	94243021	94243300	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	11599	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
29509	chr10	70616671	70617430	+	0	NA	Intergenic	Intergenic	-14262	NM_005041	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
74194	chr15	55774301	55774630	+	0	NA	Intergenic	Intergenic	-31313	NM_173814	283659		NM_173814	ENSG00000166450	PRTG	IGDCC5	protogenin	protein-coding
67988	chr14	74921221	74921680	+	0	NA	exon (NM_031464, exon 3 of 12)	exon (NM_031464, exon 3 of 12)	992	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
181600	chr5	43514451	43515950	+	0	NA	promoter-TSS (NM_198566)	promoter-TSS (NM_198566)	-52	NM_198566	375444		NM_198566	ENSG00000172244	C5orf34	-	chromosome 5 open reading frame 34	protein-coding
139598	chr2	225006771	225007200	+	0	NA	intron (NM_014689, intron 1 of 55)	L3|LINE|CR1	3555	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
33821	chr10	123583851	123583950	+	0	NA	Intergenic	Intergenic	-82455	NM_153442	2849		NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding
184080	chr5	93587771	93588650	+	0	NA	exon (NM_005654, exon 2 of 3)	exon (NM_005654, exon 2 of 3)	4988	NM_005654	7025		NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding
197448	chr6	74084651	74084750	+	0	NA	intron (NR_110856, intron 1 of 3)	L1PA5|LINE|L1	15249	NR_110856	101928516		NR_110856	ENSG00000223786	LOC101928516	-	uncharacterized LOC101928516	ncRNA
92424	chr17	8410201	8411000	+	0	NA	Intergenic	Intergenic	-12773	NM_001146684	643904		NM_001146684	ENSG00000189051	RNF222	-	ring finger protein 222	protein-coding
67239	chr14	68967171	68967330	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	12052	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
104195	chr17	80458901	80459100	+	0	NA	Intergenic	Intergenic	17607	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
14212	chr1	143193471	143194030	+	0	NA	Intergenic	Intergenic	228842	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
5893	chr1	26801301	26801500	+	0	NA	TTS (NM_001374481)	TTS (NM_001374481)	13212	NM_001374482	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
70679	chr14	103090851	103092250	+	0	NA	Intergenic	CpG	7340	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
46849	chr11	133835051	133835400	+	0	NA	Intergenic	Intergenic	10288	NM_174927	219938		NM_174927	ENSG00000166118	SPATA19	CT132|SPAS1|spergen1	spermatogenesis associated 19	protein-coding
181950	chr5	55026321	55026950	+	0	NA	intron (NM_002104, intron 2 of 4)	intron (NM_002104, intron 2 of 4)	2379	NM_002104	3003		NM_002104	ENSG00000113088	GZMK	TRYP2	granzyme K	protein-coding
33128	chr10	112367021	112367850	+	0	NA	Intergenic	Intergenic	-6681	NM_203379	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
17733	chr1	158959251	158959350	+	0	NA	intron (NM_198930, intron 7 of 7)	LTR22B1|LTR|ERVK	27748	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
236505	chrX	71910171	71910330	+	0	NA	promoter-TSS (NM_001013627)	promoter-TSS (NM_001013627)	-838	NM_001013627	340527		NM_001013627	ENSG00000204131	NHSL2	-	NHS like 2	protein-coding
21622	chr1	206579821	206580800	+	0	NA	intron (NM_182665, intron 1 of 4)	intron (NM_182665, intron 1 of 4)	23146	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
198674	chr6	107953271	107953430	+	0	NA	intron (NM_007214, intron 1 of 20)	intron (NM_007214, intron 1 of 20)	4858	NM_007214	11231		NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L	SEC63 homolog, protein translocation regulator	protein-coding
165253	chr3	73072671	73072850	+	0	NA	Intergenic	Intergenic	11101	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
86350	chr16	66518221	66518480	+	0	NA	intron (NR_073520, intron 5 of 8)	AluJo|SINE|Alu	31772	NR_073520	7084		NM_004614	ENSG00000166548	TK2	MTDPS2|MTTK|PEOB3|SCA31|TK2-EXT	thymidine kinase 2	protein-coding
147085	chr20	53837371	53838230	+	0	NA	Intergenic	(CTTC)n|Simple_repeat|Simple_repeat	37909	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
59242	chr13	23900971	23901630	+	0	NA	Intergenic	Intergenic	-3798	NR_104426	387911		NM_001007537	ENSG00000205863	C1QTNF9B	CTRP9B	C1q and TNF related 9B	protein-coding
151301	chr21	45538851	45539430	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	2706	NM_001352512	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
5496	chr1	25727701	25728100	+	0	NA	intron (NM_001385185, intron 1 of 10)	intron (NM_001385185, intron 1 of 10)	31745	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
129985	chr2	74020801	74021200	+	0	NA	intron (NM_001366022, intron 2 of 10)	intron (NM_001366022, intron 2 of 10)	18308	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
227523	chr9	91420371	91420530	+	0	NA	intron (NM_001290000, intron 1 of 1)	intron (NM_001290000, intron 1 of 1)	3382	NM_005384	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
98753	chr17	48085801	48086080	+	0	NA	intron (NM_001127228, intron 1 of 4)	AluSx|SINE|Alu	15246	NM_006807	10951		NM_006807	ENSG00000108468	CBX1	CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|Hp1beta|M31|MOD1|p25beta	chromobox 1	protein-coding
74695	chr15	62254301	62254550	+	0	NA	intron (NR_169521, intron 6 of 23)	intron (NR_169521, intron 6 of 23)	3278	NR_169521	255180		NM_173805		GOLGA2P11	-	GOLGA2 pseudogene 11	pseudo
205686	chr7	23184671	23185080	+	0	NA	intron (NM_007342, intron 1 of 6)	AluJo|SINE|Alu	2827	NM_001370444	11097		NM_007342	ENSG00000136243	NUP42	CG1|NLP-1|NLP1|NLP_1|NUPL2|UIP1|hCG1	nucleoporin 42	protein-coding
181264	chr5	39256371	39256760	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	14084	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
147804	chr20	62648851	62648950	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	6397	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
105180	chr17	82281971	82282550	+	0	NA	Intergenic	Intergenic	-8510	NR_110578	1453		NM_001893	ENSG00000141551	CSNK1D	ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID	casein kinase 1 delta	protein-coding
151034	chr21	44583871	44584100	+	0	NA	intron (NM_144991, intron 1 of 11)	L1MA9|LINE|L1	-3381	NM_198694	386680		NM_198694	ENSG00000241123	KRTAP10-5	KAP10.5|KAP18-5|KAP18.5|KRTAP10.5|KRTAP18-5|KRTAP18.1|KRTAP18.5	keratin associated protein 10-5	protein-coding
68383	chr14	79279101	79279330	+	0	NA	promoter-TSS (NM_001272020)	promoter-TSS (NM_001272020)	-165	NR_073546	9369		NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
185095	chr5	119076251	119076750	+	0	NA	intron (NM_001290321, intron 1 of 43)	intron (NM_001290321, intron 1 of 43)	5413	NM_001290322	1657		NM_005509	ENSG00000172869	DMXL1	-	Dmx like 1	protein-coding
103820	chr17	79102671	79102830	+	0	NA	intron (NM_001082575, intron 8 of 14)	intron (NM_001082575, intron 8 of 14)	27926	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
219736	chr8	81062001	81062200	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	49968	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
207396	chr7	44216301	44216700	+	0	NA	TTS (NM_001293170)	TTS (NM_001293170)	15522	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
184493	chr5	100858851	100859350	+	0	NA	intron (NM_005668, intron 3 of 4)	intron (NM_005668, intron 3 of 4)	-42535	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
79298	chr16	545321	545580	+	0	NA	intron (NM_005632, intron 3 of 13)	intron (NM_005632, intron 3 of 13)	2173	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
13602	chr1	116376201	116376780	+	0	NA	intron (NM_001160233, intron 1 of 22)	intron (NM_001160233, intron 1 of 22)	2623	NM_001160233	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
91950	chr17	7354271	7355000	+	0	NA	promoter-TSS (NM_001320436)	promoter-TSS (NM_001320436)	-521	NM_001320435	339168		NM_198154	ENSG00000182896	TMEM95	UNQ9390	transmembrane protein 95	protein-coding
74660	chr15	61169901	61170150	+	0	NA	intron (NM_134261, intron 1 of 10)	MIRb|SINE|MIR	59277	NM_134261	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
116809	chr19	18538601	18539000	+	0	NA	intron (NM_012181, intron 4 of 8)	AluJr|SINE|Alu	4773	NM_012181	23770		NM_012181	ENSG00000105701	FKBP8	FKBP38|FKBPr38	FKBP prolyl isomerase 8	protein-coding
826	chr1	1570601	1571500	+	0	NA	intron (NM_014188, intron 1 of 4)	AluY|SINE|Alu	3813	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
73810	chr15	48858451	48858590	+	0	NA	intron (NM_203349, intron 6 of 11)	intron (NM_203349, intron 6 of 11)	-19614	NM_014335	23741		NM_014335	ENSG00000255302	EID1	C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21	EP300 interacting inhibitor of differentiation 1	protein-coding
192074	chr6	16656251	16657030	+	0	NA	intron (NM_000332, intron 4 of 8)	intron (NM_000332, intron 4 of 8)	103544	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
143053	chr20	21398071	21398330	+	0	NA	promoter-TSS (NM_033176)	promoter-TSS (NM_033176)	-674	NM_033176	644524		NM_033176	ENSG00000125816	NKX2-4	NKX2.4|NKX2D	NK2 homeobox 4	protein-coding
186940	chr5	139644351	139644450	+	0	NA	Intergenic	Intergenic	-2899	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
9539	chr1	51506601	51507380	+	0	NA	intron (NM_001981, intron 1 of 24)	intron (NM_001981, intron 1 of 24)	12276	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
20977	chr1	202623871	202624030	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	19503	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
141300	chr2	240434751	240437180	+	0	NA	exon (NM_002081, exon 1 of 9)	exon (NM_002081, exon 1 of 9)	302	NM_002081	2817		NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding
50689	chr12	48866951	48867580	+	0	NA	Intergenic	Intergenic	-1395	NM_014470	27289		NM_014470	ENSG00000172602	RND1	ARHS|RHO6|RHOS	Rho family GTPase 1	protein-coding
160849	chr3	33093721	33094380	+	0	NA	exon (NM_001039770, exon 2 of 2)	exon (NM_001039770, exon 2 of 2)	2782	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
8042	chr1	38556951	38557050	+	0	NA	Intergenic	Intergenic	81804	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
5006	chr1	24415121	24416300	+	0	NA	promoter-TSS (NM_020448)	promoter-TSS (NM_020448)	-40	NR_136506	57185		NM_020448	ENSG00000001461	NIPAL3	DJ462O23.2|NPAL3|SLC57A5	NIPA like domain containing 3	protein-coding
186696	chr5	138725351	138725450	+	0	NA	Intergenic	Intergenic	27909	NR_134245	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
162527	chr3	48597721	48599350	+	0	NA	TTS (NM_003365)	TTS (NM_003365)	-3206	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
36987	chr11	11865671	11865830	+	0	NA	intron (NM_001372101, intron 1 of 26)	L1MB3|LINE|L1	23778	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
46919	chr11	134261951	134262380	+	0	NA	intron (NM_014384, intron 9 of 10)	intron (NM_014384, intron 9 of 10)	8597	NM_014384	27034		NM_014384	ENSG00000151498	ACAD8	ACAD-8|ARC42|IBDH	acyl-CoA dehydrogenase family member 8	protein-coding
85558	chr16	53438121	53438950	+	0	NA	intron (NM_001323611, intron 1 of 21)	MLT1G3|LTR|ERVL-MaLR	2916	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
222170	chr8	132918001	132918680	+	0	NA	intron (NM_003235, intron 20 of 47)	intron (NM_003235, intron 20 of 47)	51382	NM_003235	7038		NM_003235	ENSG00000042832	TG	AITD3|TGN	thyroglobulin	protein-coding
170412	chr3	185575251	185575830	+	0	NA	Intergenic	Intergenic	-10755	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
122676	chr19	49880901	49881100	+	0	NA	intron (NM_024682, intron 4 of 16)	L2c|LINE|L2	-2644	NM_001278160	84335		NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding
239265	chrY	13473951	13474380	+	0	NA	intron (NR_047598, intron 2 of 30)	AluSq|SINE|Alu	-5012	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
113692	chr19	10408431	10409380	+	0	NA	Intergenic	Intergenic	-5363	NM_007065	11140		NM_007065	ENSG00000105401	CDC37	P50CDC37	cell division cycle 37, HSP90 cochaperone	protein-coding
153612	chr22	27918551	27920230	+	0	NA	promoter-TSS (NM_001284277)	promoter-TSS (NM_001284277)	14	NR_026962	284900		NR_026962	ENSG00000235954	TTC28-AS1	TTC28-AS|TTC28AS|dJ353E16.2	TTC28 antisense RNA 1	ncRNA
174749	chr4	46844401	46844600	+	0	NA	intron (NM_130902, intron 2 of 2)	intron (NM_130902, intron 2 of 2)	64745	NM_130902	170712		NM_130902	ENSG00000170516	COX7B2	-	cytochrome c oxidase subunit 7B2	protein-coding
1920	chr1	6470801	6471030	+	0	NA	intron (NM_001042665, intron 13 of 20)	intron (NM_001042665, intron 13 of 20)	-4720	NM_148966	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
66109	chr14	59952021	59952280	+	0	NA	intron (NR_075071, intron 8 of 32)	L1PA2|LINE|L1	32437	NM_001355272	341883		NM_198499	ENSG00000131951	LRRC9	-	leucine rich repeat containing 9	protein-coding
164223	chr3	56925851	56926150	+	0	NA	intron (NM_001377407, intron 3 of 12)	intron (NM_001377407, intron 3 of 12)	-9564	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
3556	chr1	16153571	16153730	+	0	NA	intron (NM_004431, intron 1 of 16)	intron (NM_004431, intron 1 of 16)	2419	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
47398	chr12	2814551	2814650	+	0	NA	intron (NR_147202, intron 1 of 15)	AluJb|SINE|Alu	-1676	NR_146318	283440		NR_033958	ENSG00000258325	ITFG2-AS1	-	ITFG2 antisense RNA 1	ncRNA
135716	chr2	169106451	169106750	+	0	NA	Intergenic	Intergenic	25493	NM_001142271	10170		NM_005771	ENSG00000073737	DHRS9	3-alpha-HSD|3ALPHA-HSD|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4|hRoDH-E2	dehydrogenase/reductase 9	protein-coding
182211	chr5	56842121	56842380	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	26701	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
150298	chr21	41995921	41996380	+	0	NA	intron (NM_020727, intron 1 of 1)	THE1B-int|LTR|ERVL-MaLR	-13044	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
110218	chr19	1755471	1756030	+	0	NA	intron (NM_001080488, intron 1 of 1)	CpG	2244	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
7236	chr1	32337101	32338680	+	0	NA	Intergenic	Intergenic	-1657	NM_023009	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
206085	chr7	27187401	27188050	+	0	NA	intron (NR_002795, intron 1 of 1)	intron (NR_002795, intron 1 of 1)	2317	NR_002795	221883		NR_002795	ENSG00000240990	HOXA11-AS	HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|LncHOXA11|NCRNA00076	HOXA11 antisense RNA	ncRNA
59035	chr13	20460821	20461080	+	0	NA	intron (NM_015974, intron 3 of 7)	L1ME3A|LINE|L1	-27104	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
195969	chr6	41959751	41960050	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx4|SINE|Alu	-18052	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
24077	chr1	235321171	235322200	+	0	NA	intron (NM_016374, intron 2 of 23)	AluY|SINE|Alu	-5531	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
164347	chr3	58025821	58026080	+	0	NA	intron (NM_001164319, intron 1 of 44)	MIRb|SINE|MIR	17528	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
199952	chr6	127920001	127920500	+	0	NA	Intergenic	Intergenic	-1619	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
80795	chr16	3279201	3279400	+	0	NA	Intergenic	Intergenic	-4191	NM_005741	10127		NM_005741	ENSG00000006194	ZNF263	FPM315|ZKSCAN12|ZSCAN44	zinc finger protein 263	protein-coding
186668	chr5	138643651	138643750	+	0	NA	Intergenic	MER30|DNA|hAT-Charlie	-68299	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
136206	chr2	174572621	174572880	+	0	NA	intron (NM_001375837, intron 4 of 4)	intron (NM_001375837, intron 4 of 4)	-14678	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
162845	chr3	49315621	49315880	+	0	NA	intron (NM_001251877, intron 6 of 6)	intron (NM_001251877, intron 6 of 6)	24303	NM_003363	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
238489	chrX	153518001	153518200	+	0	NA	Intergenic	CpG	-18022	NM_001001344	492		NM_021949	ENSG00000067842	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase plasma membrane Ca2+ transporting 3	protein-coding
214925	chr7	151521571	151522200	+	0	NA	Intergenic	Intergenic	-1990	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
108487	chr18	71701021	71701150	+	0	NA	Intergenic	AluSx|SINE|Alu	81141	NR_126324	102724913		NR_126324	ENSG00000265352	LINC01899	-	long intergenic non-protein coding RNA 1899	ncRNA
162370	chr3	47854851	47855350	+	0	NA	intron (NM_001384879, intron 17 of 18)	intron (NM_001384879, intron 17 of 18)	5545	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
6830	chr1	31013301	31014300	+	0	NA	intron (NM_014676, intron 3 of 21)	intron (NM_014676, intron 3 of 21)	-45563	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
145072	chr20	38601601	38602030	+	0	NA	promoter-TSS (NM_001164431)	promoter-TSS (NM_001164431)	6	NM_001164431	343578		NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
80760	chr16	3163451	3163950	+	0	NA	Intergenic	LTR7C|LTR|ERV1	19409	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
199602	chr6	119284921	119285180	+	0	NA	intron (NM_005907, intron 5 of 12)	MSTB|LTR|ERVL-MaLR	64711	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
231419	chr9	131149401	131150000	+	0	NA	intron (NM_001318324, intron 14 of 35)	L2a|LINE|L2	24114	NM_001318324	8021		NM_005085	ENSG00000126883	NUP214	CAIN|CAN|IIAE9	nucleoporin 214	protein-coding
224147	chr9	4797271	4798180	+	0	NA	intron (NM_001286699, intron 1 of 6)	intron (NM_001286699, intron 1 of 6)	4781	NM_005772	10171		NM_005772	ENSG00000120158	RCL1	RNAC|RPCL1	RNA terminal phosphate cyclase like 1	protein-coding
101417	chr17	67393821	67394230	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSx4|SINE|Alu	16744	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
219113	chr8	65951171	65952400	+	0	NA	Intergenic	Intergenic	-63193	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
94031	chr17	27293151	27294500	+	0	NA	promoter-TSS (NM_001348350)	promoter-TSS (NM_001348350)	171	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
84119	chr16	29671821	29672400	+	0	NA	Intergenic	AluJb|SINE|Alu	-6898	NM_001318249	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
180036	chr5	1057551	1058400	+	0	NA	intron (NM_006598, intron 21 of 23).2	intron (NM_006598, intron 21 of 23).2	4999	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
47156	chr12	767751	768450	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	15177	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
150266	chr21	41769551	41769650	+	0	NA	Intergenic	Intergenic	-2548	NM_020639	54101		NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding
88578	chr16	85566421	85567730	+	0	NA	Intergenic	Intergenic	-44334	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
211090	chr7	102490401	102491200	+	0	NA	intron (NM_001277335, intron 16 of 19)	intron (NM_001277335, intron 16 of 19)	-11878	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
101591	chr17	68088421	68088680	+	0	NA	Intergenic	MIRb|SINE|MIR	-13005	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
151978	chr22	19148471	19148930	+	0	NA	3' UTR (NM_005315, exon 3 of 3)	3' UTR (NM_005315, exon 3 of 3)	1592	NM_005315	2928		NM_005315	ENSG00000063515	GSC2	GSCL	goosecoid homeobox 2	protein-coding
15187	chr1	149162471	149163310	+	0	NA	Intergenic	U1|snRNA|snRNA	38256	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
19076	chr1	170077001	170077230	+	0	NA	Intergenic	LTR12|LTR|ERV1	-2377	NM_001204514	22920		NM_014970	ENSG00000075945	KIFAP3	FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1	kinesin associated protein 3	protein-coding
158337	chr22	50449571	50450450	+	0	NA	intron (NM_002972, intron 36 of 40)	L1MEf|LINE|L1	25025	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
144563	chr20	35746171	35746430	+	0	NA	Intergenic	AluJb|SINE|Alu	-3964	NR_136587	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
16058	chr1	153258421	153258880	+	0	NA	Intergenic	Intergenic	-1037	NM_000427	4014		NM_000427	ENSG00000203782	LORICRIN	LOR	loricrin cornified envelope precursor protein	protein-coding
124997	chr2	9473631	9476000	+	0	NA	promoter-TSS (NM_001320858)	promoter-TSS (NM_001320858)	-240	NM_001320858	285148		NM_001039613	ENSG00000134330	IAH1	-	isoamyl acetate hydrolyzing esterase 1 (putative)	protein-coding
60877	chr13	46119971	46120330	+	0	NA	Intergenic	MIRb|SINE|MIR	-15074	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
55019	chr12	96379221	96379550	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	21054	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
51011	chr12	49690671	49690830	+	0	NA	intron (NM_175736, intron 1 of 25)	intron (NM_175736, intron 1 of 25)	16655	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
159943	chr3	17154871	17155630	+	0	NA	Intergenic	L2a|LINE|L2	222054	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
142267	chr20	3171901	3172130	+	0	NA	intron (NM_001282533, intron 1 of 5)	intron (NM_001282533, intron 1 of 5)	1534	NM_001365618	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
20624	chr1	199089521	199090200	+	0	NA	Intergenic	L1ME3A|LINE|L1	-58738	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
87893	chr16	78768651	78769350	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	669346	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
19283	chr1	172754051	172754150	+	0	NA	Intergenic	Intergenic	94997	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
228879	chr9	112513651	112514330	+	0	NA	intron (NM_133465, intron 1 of 3)	SVA_F|Retroposon|SVA	-26346	NM_001350649	100133204		NM_001350649		HSDL2-AS1	C9orf147	HSDL2 antisense RNA 1	ncRNA
192938	chr6	27762651	27762750	+	0	NA	non-coding (NR_038929, exon 3 of 3)	non-coding (NR_038929, exon 3 of 3)	956	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
135133	chr2	157434051	157434150	+	0	NA	intron (NM_004288, intron 3 of 7)	intron (NM_004288, intron 3 of 7)	9989	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
87922	chr16	79270551	79270850	+	0	NA	Intergenic	Intergenic	330037	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
207368	chr7	44103801	44106130	+	0	NA	intron (NM_001129, intron 1 of 20)	intron (NM_001129, intron 1 of 20)	620	NM_001129	165		NM_001129	ENSG00000106624	AEBP1	ACLP	AE binding protein 1	protein-coding
95773	chr17	38674501	38675680	+	0	NA	promoter-TSS (NM_001130677).2	promoter-TSS (NM_001130677).2	-133	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
99359	chr17	49902921	49903180	+	0	NA	Intergenic	Intergenic	-55033	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
90931	chr17	2610421	2610930	+	0	NA	intron (NM_000430, intron 1 of 10)	MER30|DNA|hAT-Charlie	17021	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
210388	chr7	99913971	99914300	+	0	NA	intron (NM_033091, intron 1 of 5)	L2a|LINE|L2	5395	NM_033091	89122		NM_033017	ENSG00000146833	TRIM4	RNF87	tripartite motif containing 4	protein-coding
143359	chr20	25986971	25987680	+	0	NA	Intergenic	SST1|Satellite|centr	-22474	NR_004846	100134868		NR_004846		LOC100134868	-	uncharacterized LOC100134868	ncRNA
69789	chr14	99186921	99187980	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	84747	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
70886	chr14	103870101	103870500	+	0	NA	Intergenic	Intergenic	22579	NR_038436	145216		NR_038436	ENSG00000258735	PPP1R13B-DT	HITT|LINC00637	PPP1R13B divergent transcript	ncRNA
216167	chr8	11736271	11736730	+	0	NA	intron (NM_002052, intron 2 of 6)	intron (NM_002052, intron 2 of 6)	-24756	NM_001031839	606553		NM_001031839		LINC02905	C8orf49|G4DM	long intergenic non-protein coding RNA 2905	ncRNA
40587	chr11	64390901	64391700	+	0	NA	Intergenic	AluSz|SINE|Alu	22698	NR_031602	100302280		NR_031602	ENSG00000221273	MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	ncRNA
30519	chr10	79348001	79348900	+	0	NA	intron (NM_005729, intron 1 of 5)	intron (NM_005729, intron 1 of 5)	981	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
165748	chr3	105741021	105741480	+	0	NA	intron (NM_001321811, intron 5 of 16)	AluSc8|SINE|Alu	126341	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
173483	chr4	9155171	9155330	+	0	NA	Intergenic	Intergenic	-17923	NM_001358418	100287045		NM_001358418	ENSG00000229924	FAM90A26	FAM90A26P	family with sequence similarity 90 member A26	protein-coding
25605	chr10	8061101	8062730	+	0	NA	intron (NM_002051, intron 3 of 5)	intron (NM_002051, intron 3 of 5)	7227	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
118596	chr19	36571371	36571830	+	0	NA	intron (NM_001145650, intron 2 of 4)	AluSq2|SINE|Alu	-1470	NR_110703	101927599		NR_110703	ENSG00000233527	ZNF529-AS1	-	ZNF529 antisense RNA 1	ncRNA
125930	chr2	25135171	25135530	+	0	NA	intron (NM_014971, intron 12 of 22)	intron (NM_014971, intron 12 of 22)	33230	NM_000939	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
158516	chr3	3145171	3145330	+	0	NA	intron (NR_159936, intron 5 of 8)	AluY|SINE|Alu	18310	NR_159935	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
145168	chr20	38855801	38857050	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	50728	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
56552	chr12	116922021	116922380	+	0	NA	intron (NM_153348, intron 1 of 10)	intron (NM_153348, intron 1 of 10)	11244	NM_012174	26259		NM_012174	ENSG00000174989	FBXW8	FBW6|FBW8|FBX29|FBXO29|FBXW6	F-box and WD repeat domain containing 8	protein-coding
109135	chr18	80178471	80178630	+	0	NA	TTS (NR_028340)	TTS (NR_028340)	30626	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
83171	chr16	23472071	23472630	+	0	NA	intron (NM_015044, intron 14 of 16)	AluSx1|SINE|Alu	-19161	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
174776	chr4	47836251	47838280	+	0	NA	intron (NR_125881, intron 1 of 2)	CpG	802	NM_006587	10699		NM_006587	ENSG00000145244	CORIN	ATC2|CMH30|CRN|Lrp4|PEE5|TMPRSS10	corin, serine peptidase	protein-coding
158831	chr3	9782671	9783030	+	0	NA	TTS (NM_133480)	TTS (NM_133480)	-9645	NM_001024959	10093		NM_005718	ENSG00000241553	ARPC4	ARC20|DEVLO|P20-ARC	actin related protein 2/3 complex subunit 4	protein-coding
99157	chr17	49363401	49363750	+	0	NA	intron (NR_110882, intron 1 of 2)	AluJb|SINE|Alu	-1102	NM_014897	22834		NM_014897	ENSG00000198740	ZNF652	-	zinc finger protein 652	protein-coding
66936	chr14	65477551	65477980	+	0	NA	intron (NM_004480, intron 2 of 9)	intron (NM_004480, intron 2 of 9)	6663	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
148830	chr21	8389701	8390700	+	0	NA	non-coding (NR_146151, exon 1 of 1)	non-coding (NR_146151, exon 1 of 1)	1165	NR_146151	109910379		NR_146151		RNA45SN3	-	RNA, 45S pre-ribosomal N3	rRNA
134538	chr2	143691101	143691330	+	0	NA	intron (NM_018460, intron 12 of 13)	intron (NM_018460, intron 12 of 13)	-245852	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
194457	chr6	33177651	33177950	+	0	NA	intron (NM_080680, intron 21 of 65).6	intron (NM_080680, intron 21 of 65).6	14667	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
209707	chr7	85250361	85250530	+	0	NA	promoter-TSS (NM_001384902)	promoter-TSS (NM_001384902)	-202	NM_001384901	223117		NM_152754	ENSG00000153993	SEMA3D	Sema-Z2|coll-2	semaphorin 3D	protein-coding
56044	chr12	110466601	110466980	+	0	NA	intron (NM_001164372, intron 1 of 7)	AluJb|SINE|Alu	1467	NM_016301	51184		NM_016301	ENSG00000111231	GPN3	ATPBD1C	GPN-loop GTPase 3	protein-coding
151586	chr21	46639571	46640200	+	0	NA	intron (NM_206962, intron 3 of 11)	L1MEf|LINE|L1	4211	NM_001242866	3275		NM_001535	ENSG00000160310	PRMT2	HRMT1L1	protein arginine methyltransferase 2	protein-coding
12816	chr1	109980651	109981080	+	0	NA	Intergenic	Intergenic	-3900	NM_001242673	10768		NM_006621	ENSG00000168710	AHCYL1	DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA	adenosylhomocysteinase like 1	protein-coding
47028	chr12	390701	390980	+	0	NA	intron (NM_001130148, intron 1 of 10)	MLT1H|LTR|ERVL-MaLR	1490	NM_001130147	84318		NM_032358	ENSG00000120647	CCDC77	-	coiled-coil domain containing 77	protein-coding
122649	chr19	49853201	49853430	+	0	NA	intron (NM_017432, intron 1 of 12)	intron (NM_017432, intron 1 of 12)	-1276	NR_039904	100616313		NR_039904	ENSG00000265954	MIR4749	mir-4749	microRNA 4749	ncRNA
139709	chr2	227511371	227511730	+	0	NA	intron (NM_001135189, intron 2 of 11)	intron (NM_001135189, intron 2 of 11)	39394	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
176474	chr4	89469871	89470350	+	0	NA	Intergenic	L1MC4a|LINE|L1	-162310	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
236836	chrX	79231551	79232030	+	0	NA	Intergenic	L1MA2|LINE|L1	87102	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
235364	chrX	44884851	44885550	+	0	NA	intron (NM_001291416, intron 2 of 28)	AluJb|SINE|Alu	12012	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
95253	chr17	35447921	35449080	+	0	NA	intron (NM_144682, intron 1 of 5)	intron (NM_144682, intron 1 of 5)	266	NM_144682	146857		NM_144682	ENSG00000154760	SLFN13	SLFN10|hSLFN13	schlafen family member 13	protein-coding
83878	chr16	28937601	28937800	+	0	NA	intron (NR_169755, intron 10 of 13)	intron (NR_169755, intron 10 of 13)	5729	NR_169755	930		NM_001770	ENSG00000177455	CD19	B4|CVID3	CD19 molecule	protein-coding
213070	chr7	131078751	131079500	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	27905	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
103571	chr17	78686401	78686600	+	0	NA	intron (NM_017456, intron 10 of 12)	intron (NM_017456, intron 10 of 12)	30532	NM_001292019	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
53733	chr12	68632401	68633050	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	-5350	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
132372	chr2	105764001	105764680	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	19277	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
11381	chr1	89656271	89656630	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	23330	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
15389	chr1	150185801	150186000	+	0	NA	Intergenic	AluSz|SINE|Alu	25172	NR_135098	105371433		NR_135098		LINC02988	-	long intergenic non-protein coding RNA 2988	ncRNA
160876	chr3	33446221	33447150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6280	NM_014517	7342		NM_014517	ENSG00000153560	UBP1	LBP-1B|LBP-1a|LBP1A|LBP1B	upstream binding protein 1	protein-coding
150683	chr21	43658051	43658150	+	0	NA	5' UTR (NM_007031, exon 2 of 9)	5' UTR (NM_007031, exon 2 of 9)	1388	NM_007031	11077		NM_007031	ENSG00000160207	HSF2BP	MEILB2|POF19	heat shock transcription factor 2 binding protein	protein-coding
153998	chr22	30400001	30400830	+	0	NA	intron (NM_033382, intron 2 of 10)	intron (NM_033382, intron 2 of 10)	3397	NM_001291932	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
236511	chrX	72018351	72019650	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	-25409	NR_002309	441502		NR_002309		RPS26P11	RPS26L1|RPS26_22_1784|bA366E13.1	ribosomal protein S26 pseudogene 11	pseudo
113918	chr19	10704301	10704500	+	0	NA	intron (NM_031209, intron 3 of 9)	AluY|SINE|Alu	2961	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
226253	chr9	67719151	67719250	+	0	NA	promoter-TSS (NR_103833)	promoter-TSS (NR_103833)	-21	NR_103833	100131997		NR_103833	ENSG00000274026	FAM27E3	-	family with sequence similarity 27 member E3	ncRNA
84317	chr16	30121471	30121630	+	0	NA	intron (NM_001040056, intron 2 of 6)	intron (NM_001040056, intron 2 of 6)	1670	NM_001040056	5595		NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
184215	chr5	95964371	95964530	+	0	NA	intron (NR_130776, intron 1 of 4)	intron (NR_130776, intron 1 of 4)	2449	NR_130776	101929710		NR_130776	ENSG00000251314	LOC101929710	-	uncharacterized LOC101929710	ncRNA
3898	chr1	17117871	17118230	+	0	NA	intron (NM_007365, intron 1 of 15)	intron (NM_007365, intron 1 of 15)	1401	NM_007365	11240		NM_007365	ENSG00000117115	PADI2	PAD-H19|PAD2|PDI2	peptidyl arginine deiminase 2	protein-coding
51640	chr12	53008551	53008850	+	0	NA	intron (NM_001300821, intron 1 of 14)	intron (NM_001300821, intron 1 of 14)	2244	NM_001330654	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
16126	chr1	153650951	153651250	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7554	NR_052020	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
29220	chr10	69027421	69028280	+	0	NA	Intergenic	Intergenic	39047	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
48499	chr12	9857771	9858130	+	0	NA	intron (NM_005127, intron 2 of 4)	intron (NM_005127, intron 2 of 4)	11909	NM_005127	9976		NM_005127	ENSG00000110852	CLEC2B	AICL|CLECSF2|HP10085|IFNRG1	C-type lectin domain family 2 member B	protein-coding
177023	chr4	106676651	106676750	+	0	NA	Intergenic	Intergenic	243076	NR_147150	105377355		NR_147150	ENSG00000249613	LINC02173	-	long intergenic non-protein coding RNA 2173	ncRNA
140135	chr2	231556001	231556400	+	0	NA	Intergenic	AluSp|SINE|Alu	-25755	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
236497	chrX	71760651	71761150	+	0	NA	Intergenic	Intergenic	-2390	NM_001145140	100130361		NM_001145140	ENSG00000215115	CXorf49	CXorf49B	chromosome X open reading frame 49	protein-coding
157211	chr22	43159271	43159750	+	0	NA	intron (NM_000714, intron 2 of 3)	intron (NM_000714, intron 2 of 3)	7575	NM_001256530	706		NM_000714	ENSG00000100300	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|TSPO1|mDRC|pk18	translocator protein	protein-coding
117291	chr19	19485301	19485700	+	0	NA	intron (NM_001384541, intron 2 of 10)	intron (NM_001384541, intron 2 of 10)	30048	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
106499	chr18	15000301	15000900	+	0	NA	Intergenic	Intergenic	-30132	NR_110783	101927642		NR_110783	ENSG00000264301	LINC01444	-	long intergenic non-protein coding RNA 1444	ncRNA
150784	chr21	43855171	43855600	+	0	NA	Intergenic	Intergenic	-9838	NM_020132	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
4379	chr1	20731201	20732600	+	0	NA	intron (NM_001103161, intron 1 of 9)	CpG	803	NM_001103160	400745		NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
77055	chr15	78874301	78874850	+	0	NA	intron (NM_001265604, intron 1 of 11)	AluJb|SINE|Alu	1586	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
7194	chr1	32276301	32276750	+	0	NA	intron (NM_001042771, intron 8 of 12)	intron (NM_001042771, intron 8 of 12)	2414	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
147210	chr20	57382621	57383000	+	0	NA	Intergenic	ORSL-2b|DNA|hAT-Tip100	-8586	NM_001291780	55544		NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding
188133	chr5	150397021	150398080	+	0	NA	intron (NM_001371623, intron 24 of 26)	intron (NM_001371623, intron 24 of 26)	15206	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
129492	chr2	69618401	69618600	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	25238	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
9502	chr1	51289651	51289950	+	0	NA	intron (NM_001144832, intron 16 of 17)	intron (NM_001144832, intron 16 of 17)	8161	NM_001297666	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
1764	chr1	6026901	6027700	+	0	NA	intron (NM_172130, intron 1 of 14)	intron (NM_172130, intron 1 of 14)	967	NM_003636	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
4947	chr1	23970321	23970600	+	0	NA	3' UTR (NM_054016, exon 6 of 6)	3' UTR (NM_054016, exon 6 of 6)	9867	NM_001191009	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
207431	chr7	44505371	44505730	+	0	NA	Intergenic	AluSx3|SINE|Alu	-14892	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
222624	chr8	141087201	141087400	+	0	NA	Intergenic	Intergenic	-41289	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
216239	chr8	12197951	12198250	+	0	NA	intron (NR_146925, intron 2 of 3)	AluJr|SINE|Alu	-3967	NR_148876	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
221758	chr8	127797671	127797830	+	0	NA	intron (NR_003367, intron 1 of 8)	intron (NR_003367, intron 1 of 8)	1788	NR_031609	100302185		NR_031609	ENSG00000283710	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA
70201	chr14	100550071	100550230	+	0	NA	intron (NM_001385101, intron 1 of 5)	intron (NM_001385101, intron 1 of 5)	-2023	NM_001385104	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
177329	chr4	109755471	109755630	+	0	NA	intron (NM_001375280, intron 6 of 12)	MSTD|LTR|ERVL-MaLR	-25480	NM_030821	81579		NM_030821	ENSG00000123739	PLA2G12A	GXII|PLA2G12|ROSSY	phospholipase A2 group XIIA	protein-coding
170741	chr3	188298901	188299450	+	0	NA	intron (NR_164692, intron 2 of 9)	intron (NR_164692, intron 2 of 9)	86279	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
180584	chr5	14871031	14873450	+	0	NA	promoter-TSS (NM_054027)	promoter-TSS (NM_054027)	-462	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
167727	chr3	131026071	131027450	+	0	NA	promoter-TSS (NM_001353034)	promoter-TSS (NM_001353034)	65	NM_014065	28990		NM_014065	ENSG00000034533	ASTE1	HT001	asteroid homolog 1	protein-coding
142139	chr20	2747471	2748150	+	0	NA	intron (NR_138537, intron 7 of 17)	intron (NR_138537, intron 7 of 17)	52817	NM_019609	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
86885	chr16	67992001	67992350	+	0	NA	non-coding (NR_136706, exon 5 of 12)	non-coding (NR_136706, exon 5 of 12)	1219	NM_001369657	64174		NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
66307	chr14	61406301	61407150	+	0	NA	intron (NM_006255, intron 2 of 13)	Tigger18a|DNA|TcMar-Tigger	85282	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
199420	chr6	116680101	116681900	+	0	NA	promoter-TSS (NM_001366308)	promoter-TSS (NM_001366308)	-211	NM_001366309	3841		NM_002269	ENSG00000196911	KPNA5	IPOA6|SRP6	karyopherin subunit alpha 5	protein-coding
111672	chr19	4255721	4256000	+	0	NA	intron (NM_018074, intron 4 of 7)	AluSq2|SINE|Alu	8780	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
205263	chr7	8143421	8144100	+	0	NA	intron (NM_001350828, intron 9 of 14)	intron (NM_001350828, intron 9 of 14)	118407	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
765	chr1	1511501	1513730	+	0	NA	promoter-TSS (NM_001170536)	promoter-TSS (NM_001170536)	85	NM_001170536	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
228846	chr9	112269471	112269800	+	0	NA	intron (NM_001375920, intron 2 of 12)	MIR3|SINE|MIR	63391	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
43425	chr11	77477871	77478430	+	0	NA	Intergenic	MER6A|DNA|TcMar-Tigger	-4056	NM_001128620	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
212921	chr7	130915001	130915350	+	0	NA	intron (NR_109780, intron 2 of 3)	intron (NR_109780, intron 2 of 3)	1711	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
78510	chr15	92935421	92936030	+	0	NA	intron (NM_001042572, intron 5 of 12)	intron (NM_001042572, intron 5 of 12)	31326	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
54526	chr12	92121621	92122200	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	19803	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
138095	chr2	202257871	202258230	+	0	NA	Intergenic	AluSz6|SINE|Alu	-7713	NM_015934	51602		NM_015934	ENSG00000055044	NOP58	HSPC120|NOP5|NOP5/NOP58	NOP58 ribonucleoprotein	protein-coding
164841	chr3	71033651	71033950	+	0	NA	intron (NM_001244810, intron 11 of 20)	intron (NM_001244810, intron 11 of 20)	31124	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
27166	chr10	28529671	28530300	+	0	NA	intron (NR_033805, intron 1 of 2)	L2a|LINE|L2	2369	NR_033805	220906		NR_033805		WAC-AS1	-	WAC antisense RNA 1 (head to head)	ncRNA
45944	chr11	121327721	121328700	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	35342	NM_001024956	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
96832	chr17	41965101	41968300	+	0	NA	promoter-TSS (NM_033133)	promoter-TSS (NM_033133)	-95	NM_033133	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
178275	chr4	144012151	144012250	+	0	NA	intron (NM_002100, intron 1 of 4)	intron (NM_002100, intron 1 of 4)	7145	NM_001304382	2994		NM_002100	ENSG00000250361	GYPB	CD235b|GPB|GYP|GYPA|MNS|PAS-3|SS	glycophorin B (MNS blood group)	protein-coding
232973	chr9	136972021	136972480	+	0	NA	intron (NR_157392, intron 4 of 4)	intron (NR_157392, intron 4 of 4)	2838	NR_157392	101928638		NM_001101674		LINC02692	C9orf141|PRR31	long intergenic non-protein coding RNA 2692	ncRNA
219360	chr8	70363851	70364250	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	39340	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
28082	chr10	43365371	43366180	+	0	NA	Intergenic	AluJr4|SINE|Alu	-5861	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
139631	chr2	225668601	225668880	+	0	NA	intron (NM_001371273, intron 7 of 7)	intron (NM_001371273, intron 7 of 7)	267854	NM_020864	57624		NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding
43373	chr11	77037751	77038050	+	0	NA	intron (NM_138706, intron 1 of 1)	AluJb|SINE|Alu	3502	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
38903	chr11	47415451	47415900	+	0	NA	3' UTR (NM_001128225, exon 10 of 10)	3' UTR (NM_001128225, exon 10 of 10)	7085	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
145196	chr20	38887751	38888150	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	-38467	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
118568	chr19	36216501	36217250	+	0	NA	intron (NM_001099638, intron 1 of 2)	AluJr|SINE|Alu	1769	NM_007145	7705		NM_007145	ENSG00000167635	ZNF146	OZF	zinc finger protein 146	protein-coding
176102	chr4	83007451	83008350	+	0	NA	intron (NM_001115007, intron 1 of 12)	AluSx3|SINE|Alu	2923	NM_194282	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
181786	chr5	50792871	50793130	+	0	NA	intron (NM_024615, intron 10 of 25)	intron (NM_024615, intron 10 of 25)	125586	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
35926	chr11	2443321	2443580	+	0	NA	Intergenic	Intergenic	-1558	NM_000218	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
151807	chr22	18208721	18208980	+	0	NA	Intergenic	AluSc|SINE|Alu	-2941	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
225914	chr9	40169301	40169500	+	0	NA	Intergenic	Intergenic	-154171	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
147037	chr20	53622171	53622330	+	0	NA	intron (NR_134576, intron 2 of 2)	intron (NR_134576, intron 2 of 2)	13896	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
98273	chr17	46197271	46197880	+	0	NA	TTS (NR_034172)	TTS (NR_034172)	4002	NR_034172	644246		NR_034172	ENSG00000214401	KANSL1-AS1	-	KANSL1 antisense RNA 1	ncRNA
222723	chr8	141346571	141347680	+	0	NA	Intergenic	Intergenic	6576	NR_024441	731779		NR_024441	ENSG00000253595	LINC01300	-	long intergenic non-protein coding RNA 1300	ncRNA
76796	chr15	77025901	77026550	+	0	NA	intron (NR_135552, intron 5 of 11)	intron (NR_135552, intron 5 of 11)	31099	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
120645	chr19	45073151	45073450	+	0	NA	intron (NM_145288, intron 2 of 2)	intron (NM_145288, intron 2 of 2)	-2327	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
73458	chr15	43482421	43482680	+	0	NA	intron (NM_001355001, intron 4 of 28)	AluSc8|SINE|Alu	10606	NM_001141980	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
14152	chr1	121148501	121148800	+	0	NA	Intergenic	Intergenic	-30024	NR_160940	106479023		NR_160940		H3P4	HIST2H3DP1|p05	H3 histone pseudogene 4	pseudo
188716	chr5	157323021	157323630	+	0	NA	intron (NM_001291722, intron 16 of 31)	intron (NM_001291722, intron 16 of 31)	22352	NM_001001343	408263		NM_001001343	ENSG00000172568	FNDC9	C5orf40	fibronectin type III domain containing 9	protein-coding
31700	chr10	97642421	97643080	+	0	NA	intron (NM_018425, intron 1 of 8)	intron (NM_018425, intron 1 of 8)	2064	NM_018425	55361		NM_018425	ENSG00000155252	PI4K2A	NEDMSB|PI4KII|PIK42A	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
98086	chr17	45584201	45586880	+	0	NA	Intergenic	CpG	16322	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
215611	chr7	159174771	159176130	+	0	NA	Intergenic	Intergenic	-30493	NM_001304522	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
153966	chr22	30361801	30363100	+	0	NA	intron (NM_001017437, intron 2 of 11)	L2b|LINE|L2	-5556	NM_005877	10291		NM_005877	ENSG00000099995	SF3A1	PRP21|PRPF21|SAP114|SF3A120	splicing factor 3a subunit 1	protein-coding
97162	chr17	42598801	42599000	+	0	NA	intron (NR_026697, intron 1 of 7)	intron (NR_026697, intron 1 of 7)	10474	NM_178126	162427		NM_178126	ENSG00000141699	RETREG3	FAM134C	reticulophagy regulator family member 3	protein-coding
26836	chr10	24706521	24707000	+	0	NA	intron (NR_160021, intron 2 of 26)	intron (NR_160021, intron 2 of 26)	15988	NM_001367453	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
229864	chr9	126444551	126444650	+	0	NA	intron (NM_033446, intron 7 of 9)	intron (NM_033446, intron 7 of 9)	-34096	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
49338	chr12	22048021	22048480	+	0	NA	intron (NR_135117, intron 1 of 6)	L2a|LINE|L2	2032	NM_018686	55907		NM_018686	ENSG00000111726	CMAS	CSS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein-coding
127672	chr2	43183851	43184850	+	0	NA	Intergenic	Intergenic	42256	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
177590	chr4	120719021	120719280	+	0	NA	intron (NM_001300824, intron 12 of 13)	MER20|DNA|hAT-Charlie	203576	NM_001379106	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
52263	chr12	54473351	54473900	+	0	NA	promoter-TSS (NM_144594)	promoter-TSS (NM_144594)	-23	NM_144594	121355		NM_144594	ENSG00000170627	GTSF1	Cue110|FAM112B	gametocyte specific factor 1	protein-coding
1106	chr1	2047521	2047780	+	0	NA	Intergenic	Intergenic	2420	NR_135509	105378591		NR_135509	ENSG00000226969	PRKCZ-DT	-	PRKCZ divergent transcript	ncRNA
160439	chr3	28343271	28343450	+	0	NA	intron (NM_001271650, intron 1 of 8)	L2|LINE|L2	-5361	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
165767	chr3	105762801	105763000	+	0	NA	intron (NR_135806, intron 4 of 20)	THE1B-int|LTR|ERVL-MaLR	104691	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
55340	chr12	103961571	103961930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4054	NM_001363612	6996		NM_003211	ENSG00000139372	TDG	hTDG	thymine DNA glycosylase	protein-coding
207223	chr7	43665471	43665700	+	0	NA	intron (NM_001371313, intron 1 of 8)	THE1D|LTR|ERVL-MaLR	63938	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
216148	chr8	11553501	11554330	+	0	NA	intron (NM_001715, intron 6 of 12)	intron (NM_001715, intron 6 of 12)	-22620	NR_040035	83655		NM_054029	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
110773	chr19	2422951	2423750	+	0	NA	intron (NM_001385642, intron 14 of 17)	intron (NM_001385642, intron 14 of 17)	4236	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
155175	chr22	37744501	37744700	+	0	NA	non-coding (NR_160696, exon 3 of 3)	non-coding (NR_160696, exon 3 of 3)	1344	NR_160697	102724378		NR_160696		LOC102724378	-	uncharacterized LOC102724378	ncRNA
57095	chr12	121036411	121037900	+	0	NA	intron (NM_198213, intron 1 of 4)	MIR3|SINE|MIR	2087	NM_003733	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
175369	chr4	70619101	70619780	+	0	NA	Intergenic	Intergenic	-9304	NM_031889	10117		NM_031889	ENSG00000132464	ENAM	ADAI|AI1C|AIH2	enamelin	protein-coding
130721	chr2	86745671	86746250	+	0	NA	intron (NM_022780, intron 2 of 8)	intron (NM_022780, intron 2 of 8)	-24838	NM_001198954	100526767		NM_001198954	ENSG00000249884	RNF103-CHMP3	CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24	RNF103-CHMP3 readthrough	protein-coding
236479	chrX	71622321	71623100	+	0	NA	Intergenic	Intergenic	-4199	NM_001504	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
137349	chr2	196148901	196149330	+	0	NA	intron (NM_004226, intron 3 of 7)	MIRb|SINE|MIR	22463	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
207347	chr7	44072321	44073130	+	0	NA	TTS (NR_106897)	TTS (NR_106897)	708	NR_106897	102465504		NR_106897	ENSG00000283969	MIR6838	hsa-mir-6838	microRNA 6838	ncRNA
195587	chr6	37533471	37533830	+	0	NA	intron (NR_126057, intron 1 of 3)	intron (NR_126057, intron 1 of 3)	21772	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
106477	chr18	14178551	14179580	+	0	NA	promoter-TSS (NR_040113)	promoter-TSS (NR_040113)	-32	NR_040113	440482		NM_001029999		ANKRD20A5P	ANKRD20A5	ankyrin repeat domain 20 family member A5, pseudogene	pseudo
94945	chr17	32078171	32078550	+	0	NA	Intergenic	Intergenic	38024	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
217758	chr8	31019321	31019600	+	0	NA	intron (NM_001323312, intron 2 of 2)	AluSx1|SINE|Alu	13341	NM_013357	29942		NM_013357	ENSG00000172733	PURG	PURG-A|PURG-B|PURGA|PURGB	purine rich element binding protein G	protein-coding
233417	chr9	137592021	137592980	+	0	NA	Intergenic	AluSx|SINE|Alu	-1988	NM_138462	116225		NM_138462	ENSG00000165724	ZMYND19	MIZIP	zinc finger MYND-type containing 19	protein-coding
103419	chr17	78238471	78238630	+	0	NA	intron (NM_001204210, intron 4 of 5)	intron (NM_001204210, intron 4 of 5)	7240	NM_001204210	283999		NM_001145529	ENSG00000204278	TMEM235	ARGM1	transmembrane protein 235	protein-coding
142248	chr20	3156001	3156400	+	0	NA	intron (NM_021826, intron 1 of 1)	AluSz6|SINE|Alu	3665	NM_014948	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
76261	chr15	74059521	74059780	+	0	NA	Intergenic	Intergenic	22900	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
60367	chr13	40925221	40926080	+	0	NA	Intergenic	L1ME3A|LINE|L1	-3876	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
57060	chr12	120905921	120906700	+	0	NA	intron (NR_131215, intron 1 of 1)	intron (NR_131215, intron 1 of 1)	1615	NR_131215	105500240		NR_131215		XLOC_009911	-	uncharacterized LOC105500240	ncRNA
87420	chr16	70681951	70682250	+	0	NA	intron (NM_138383, intron 1 of 14)	intron (NM_138383, intron 1 of 14)	3953	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
54722	chr12	93569151	93570500	+	0	NA	promoter-TSS (NM_003877)	promoter-TSS (NM_003877)	-144	NM_003877	8835		NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
21305	chr1	204496101	204496850	+	0	NA	Intergenic	Intergenic	-1670	NM_001377334	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
60678	chr13	43127821	43128230	+	0	NA	intron (NR_047013, intron 1 of 2)	(TCTC)n|Simple_repeat|Simple_repeat	14860	NR_047013	100874159		NR_047013		LINC00400	-	long intergenic non-protein coding RNA 400	ncRNA
181582	chr5	43306971	43307130	+	0	NA	intron (NM_002130, intron 1 of 9)	intron (NM_002130, intron 1 of 9)	6131	NM_001330663	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
164396	chr3	58414471	58415230	+	0	NA	intron (NM_001349521, intron 18 of 18)	intron (NM_001349521, intron 18 of 18)	18982	NM_000925	5162		NM_000925	ENSG00000168291	PDHB	E1beta|PDHBD|PDHE1-B|PDHE1B|PHE1B	pyruvate dehydrogenase E1 subunit beta	protein-coding
8245	chr1	39765301	39765900	+	0	NA	intron (NM_001720, intron 3 of 6)	intron (NM_001720, intron 3 of 6)	5748	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
77238	chr15	81295371	81295880	+	0	NA	intron (NM_001352684, intron 13 of 19)	intron (NM_001352684, intron 13 of 19)	-1345	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
110674	chr19	2263321	2263880	+	0	NA	Intergenic	AluY|SINE|Alu	-5886	NM_001301020	4946		NM_004152	ENSG00000104904	OAZ1	AZ1|AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
209882	chr7	91394871	91395150	+	0	NA	Intergenic	L1PA3|LINE|L1	130577	NM_003505	8321		NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
165510	chr3	100289451	100289550	+	0	NA	intron (NM_001199198, intron 4 of 18)	intron (NM_001199198, intron 4 of 18)	28508	NM_001199198	55773		NM_018309	ENSG00000036054	TBC1D23	NS4ATP1|PCH11	TBC1 domain family member 23	protein-coding
219905	chr8	85976851	85976950	+	0	NA	Intergenic	Intergenic	92768	NM_033126	85481		NM_033126	ENSG00000147613	PSKH2	-	protein serine kinase H2	protein-coding
141357	chr2	240624821	240625980	+	0	NA	5' UTR (NM_005301, exon 1 of 2)	5' UTR (NM_005301, exon 1 of 2)	155	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
224168	chr9	5178271	5178730	+	0	NA	intron (NM_007179, intron 1 of 1)	L1PA12|LINE|L1	7139	NM_007179	11172		NM_007179	ENSG00000120210	INSL6	RIF1	insulin like 6	protein-coding
68344	chr14	77615521	77615870	+	0	NA	intron (NM_004863, intron 1 of 11)	intron (NM_004863, intron 1 of 11)	942	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
90045	chr16	89915521	89916780	+	0	NA	Intergenic	Intergenic	-2712	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
23853	chr1	234758571	234759680	+	0	NA	non-coding (NR_148962, exon 1 of 1)	non-coding (NR_148962, exon 1 of 1)	931	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
22333	chr1	214287921	214288280	+	0	NA	intron (NM_020197, intron 1 of 11)	intron (NM_020197, intron 1 of 11)	6941	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
93164	chr17	17781271	17782600	+	0	NA	intron (NM_030665, intron 2 of 5)	CpG	-2406	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
188512	chr5	155139671	155139830	+	0	NA	Intergenic	Intergenic	125995	NM_001099293	285643		NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
77989	chr15	89442771	89443030	+	0	NA	Intergenic	Intergenic	42729	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
32468	chr10	102651151	102651630	+	0	NA	intron (NM_001345950, intron 1 of 4)	intron (NM_001345950, intron 1 of 4)	6895	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
120971	chr19	45713371	45713730	+	0	NA	5' UTR (NM_001080469, exon 2 of 2)	5' UTR (NM_001080469, exon 2 of 2)	1728	NM_001329632	23403		NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding
219655	chr8	80487801	80488330	+	0	NA	intron (NM_023929, intron 1 of 6)	intron (NM_023929, intron 1 of 6)	1839	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
228391	chr9	99127951	99128450	+	0	NA	intron (NM_001130916, intron 1 of 7)	intron (NM_001130916, intron 1 of 7)	23087	NM_004612	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233591	chrX	317421	318500	+	0	NA	intron (NM_012227, intron 1 of 9)	intron (NM_012227, intron 1 of 9)	859	NM_012227	8225		NM_012227	ENSG00000178605	GTPBP6	PGPL	GTP binding protein 6 (putative)	protein-coding
116998	chr19	18899071	18899330	+	0	NA	TTS (NM_001330469)	TTS (NM_001330469)	-2473	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
226889	chr9	78253301	78253500	+	0	NA	intron (NM_001349839, intron 10 of 16)	intron (NM_001349839, intron 10 of 16)	17325	NM_001330693	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
202392	chr6	157840821	157841080	+	0	NA	intron (NM_016224, intron 1 of 17)	intron (NM_016224, intron 1 of 17)	17704	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
156918	chr22	42283351	42284550	+	0	NA	promoter-TSS (NM_005650)	promoter-TSS (NM_005650)	-23	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
76592	chr15	75354951	75355050	+	0	NA	TTS (NM_006715)	TTS (NM_006715)	-1315	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
186647	chr5	138564271	138564530	+	0	NA	intron (NM_004134, intron 9 of 16)	AluSx1|SINE|Alu	-3290	NR_002913	26785		NR_002913	ENSG00000206989	SNORD63	RNU63|SNORD63A|U63	small nucleolar RNA, C/D box 63	snoRNA
32100	chr10	101162821	101163080	+	0	NA	Intergenic	Intergenic	-13372	NR_120620	101927396		NR_120620	ENSG00000237579	LINC01514	-	long intergenic non-protein coding RNA 1514	ncRNA
15681	chr1	150963951	150964250	+	0	NA	intron (NM_012432, intron 21 of 21)	intron (NM_012432, intron 21 of 21)	10735	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
11689	chr1	91846071	91846230	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	40001	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
194622	chr6	33567221	33569430	+	0	NA	Intergenic	Intergenic	11951	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
202143	chr6	155143051	155143830	+	0	NA	intron (NM_001384547, intron 4 of 25)	MamRep434|DNA|TcMar-Tigger	36453	NM_001384547	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
164368	chr3	58176971	58177130	+	0	NA	Intergenic	Intergenic	-6415	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
148054	chr20	63246801	63247700	+	0	NA	intron (NM_152864, intron 4 of 6)	intron (NM_152864, intron 4 of 6)	6245	NM_001363718	128414		NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	sodium/potassium transporting ATPase interacting 4	protein-coding
16313	chr1	154184501	154184700	+	0	NA	intron (NM_001364680, intron 2 of 8)	intron (NM_001364680, intron 2 of 8)	-1351	NM_001278190	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
144914	chr20	36966851	36967300	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15367	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
59778	chr13	30157101	30157900	+	0	NA	Intergenic	Intergenic	-4426	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
118792	chr19	38404421	38404680	+	0	NA	intron (NM_174905, intron 3 of 7)	AluSc5|SINE|Alu	1415	NM_001351675	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
89833	chr16	89582471	89582830	+	0	NA	intron (NM_014427, intron 3 of 16)	intron (NM_014427, intron 3 of 16)	6892	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
158712	chr3	8328751	8329700	+	0	NA	intron (NR_033378, intron 3 of 3)	MER90a|LTR|ERV1	172433	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
172338	chr4	1697421	1697880	+	0	NA	intron (NM_006527, intron 5 of 7)	AluSp|SINE|Alu	-13337	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
224196	chr9	5446901	5448080	+	0	NA	Intergenic	Intergenic	-3013	NM_001267706	29126		NM_014143	ENSG00000120217	CD274	B7-H|B7H1|PD-L1|PDCD1L1|PDCD1LG1|PDL1|hPD-L1	CD274 molecule	protein-coding
147128	chr20	54173401	54173700	+	0	NA	exon (NM_000782, exon 1 of 12)	exon (NM_000782, exon 1 of 12)	436	NM_000782	1591		NM_000782	ENSG00000019186	CYP24A1	CP24|CYP24|HCAI|HCINF1|P450-CC24	cytochrome P450 family 24 subfamily A member 1	protein-coding
56756	chr12	120152001	120152530	+	0	NA	intron (NM_006836, intron 33 of 57)	AluJr4|SINE|Alu	3234	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
53498	chr12	66303481	66304070	+	0	NA	intron (NM_033647, intron 1 of 13)	intron (NM_033647, intron 1 of 13)	1230	NR_135080	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
174572	chr4	40232801	40233400	+	0	NA	intron (NM_001278360, intron 2 of 3)	MIRb|SINE|MIR	36069	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
124690	chr2	3526851	3527300	+	0	NA	Intergenic	Intergenic	-7544	NM_018269	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
231820	chr9	132486751	132488230	+	0	NA	intron (NM_207417, intron 2 of 6)	intron (NM_207417, intron 2 of 6)	77279	NM_207417	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
183962	chr5	88672801	88673000	+	0	NA	intron (NR_152235, intron 1 of 3)	CpG	439	NR_152242	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
7287	chr1	32390121	32390380	+	0	NA	intron (NM_018045, intron 2 of 10)	L2c|LINE|L2	4191	NM_018045	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
10011	chr1	55209401	55210080	+	0	NA	intron (NM_015306, intron 1 of 67)	Tigger15a|DNA|TcMar-Tigger	5624	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
168191	chr3	141017551	141018450	+	0	NA	Intergenic	LTR12|LTR|ERV1	-33347	NM_080862	92369		NM_080862	ENSG00000175093	SPSB4	SSB-4|SSB4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
81987	chr16	11895371	11895730	+	0	NA	intron (NM_001130007, intron 4 of 14)	intron (NM_001130007, intron 4 of 14)	20406	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
19244	chr1	172660301	172660530	+	0	NA	intron (NM_000639, intron 2 of 3)	intron (NM_000639, intron 2 of 3)	1312	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
182354	chr5	59673651	59673750	+	0	NA	intron (NM_001364600, intron 3 of 7)	intron (NM_001364600, intron 3 of 7)	30003	NR_030308	693167		NR_030308	ENSG00000202601	MIR582	MIRN582|hsa-mir-582	microRNA 582	ncRNA
151782	chr22	18114001	18114430	+	0	NA	intron (NM_018943, intron 1 of 4)	intron (NM_018943, intron 1 of 4)	3406	NM_001193414	51807		NM_018943	ENSG00000183785	TUBA8	CDCBM8|MACTHC2|TUBAL2	tubulin alpha 8	protein-coding
237324	chrX	118494721	118496000	+	0	NA	promoter-TSS (NM_144658)	promoter-TSS (NM_144658)	-549	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
54214	chr12	79920401	79921130	+	0	NA	intron (NM_001143885, intron 2 of 25)	MSTC|LTR|ERVL-MaLR	-6854	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
116966	chr19	18867571	18867900	+	0	NA	TTS (NM_001492)	TTS (NM_001492)	28423	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
53105	chr12	57769321	57769880	+	0	NA	exon (NM_023033, exon 3 of 5)	exon (NM_023033, exon 3 of 5)	2505	NM_023033	4234		NM_005371	ENSG00000037897	METTL1	C12orf1|TRM8|TRMT8|YDL201w	methyltransferase 1, tRNA methylguanosine	protein-coding
169203	chr3	156816361	156817880	+	0	NA	promoter-TSS (NR_038387)	promoter-TSS (NR_038387)	-58	NR_038387	730091		NR_038387	ENSG00000240875	LINC00886	-	long intergenic non-protein coding RNA 886	ncRNA
120308	chr19	43494871	43495230	+	0	NA	intron (NM_198850, intron 8 of 15)	MSR1|Satellite|Satellite	9783	NM_198850	653583		NM_198850	ENSG00000176531	PHLDB3	-	pleckstrin homology like domain family B member 3	protein-coding
63953	chr14	22107421	22107680	+	0	NA	Intergenic	Charlie17a|DNA|hAT-Charlie	325203	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
21456	chr1	205504271	205505600	+	0	NA	intron (NM_002596, intron 1 of 15)	CpG	266	NM_212502	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
162435	chr3	48431501	48431700	+	0	NA	TTS (NM_001256967)	TTS (NM_001256967)	-1514	NM_001130082	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
91234	chr17	3939651	3940150	+	0	NA	intron (NM_174953, intron 14 of 22)	L1ME2z|LINE|L1	-23435	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
121291	chr19	46725151	46725530	+	0	NA	exon (NM_013403, exon 11 of 18)	exon (NM_013403, exon 11 of 18)	-8213	NM_001079881	25865		NM_016457	ENSG00000105287	PRKD2	HSPC187|PKD2|nPKC-D2	protein kinase D2	protein-coding
175063	chr4	54041001	54041480	+	0	NA	intron (NM_012110, intron 3 of 5)	intron (NM_012110, intron 3 of 5)	23365	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
137043	chr2	190877401	190877600	+	0	NA	Intergenic	Intergenic	-3321	NM_001256310	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
174465	chr4	39753001	39753200	+	0	NA	intron (NM_001312646, intron 3 of 4)	intron (NM_001312646, intron 3 of 4)	54964	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
59941	chr13	31159971	31160230	+	0	NA	intron (NM_001286504, intron 1 of 17)	intron (NM_001286504, intron 1 of 17)	1804	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
8776	chr1	42783721	42783980	+	0	NA	intron (NR_133055, intron 2 of 2)	intron (NR_133055, intron 2 of 2)	1045	NR_133055	105378683		NR_133055		TMEM269-DT	C1orf50-AS1	TMEM269 divergent transcript	ncRNA
73545	chr15	43903721	43904000	+	0	NA	intron (NM_001286491, intron 8 of 14)	intron (NM_001286491, intron 8 of 14)	-25689	NR_003571	728758		NR_003571		PIN4P1	-	peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1	pseudo
14911	chr1	147223751	147224050	+	0	NA	intron (NM_001144830, intron 1 of 6)	intron (NM_001144830, intron 1 of 6)	1439	NM_001461	2330		NM_001461	ENSG00000131781	FMO5	hBVMO1	flavin containing dimethylaniline monoxygenase 5	protein-coding
48563	chr12	10249351	10250300	+	0	NA	intron (NM_001351060, intron 2 of 8)	intron (NM_001351060, intron 2 of 8)	10864	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
33293	chr10	114694771	114695080	+	0	NA	intron (NM_001322884, intron 1 of 20)	MER5A1|DNA|hAT-Charlie	-9922	NM_001322882	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
193145	chr6	29628701	29629530	+	0	NA	promoter-TSS (NM_021903).7	promoter-TSS (NM_021903).7	-887	NM_021903	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
195806	chr6	41092501	41092750	+	0	NA	intron (NM_021705, intron 6 of 8)	intron (NM_021705, intron 6 of 8)	5162	NM_001329690	221443		NM_145063	ENSG00000124596	OARD1	C6orf130|TARG1|dJ34B21.3	O-acyl-ADP-ribose deacylase 1	protein-coding
208075	chr7	56088451	56088780	+	0	NA	intron (NR_047689, intron 2 of 8)	AluJr|SINE|Alu	4337	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
124946	chr2	8612751	8613050	+	0	NA	Intergenic	Intergenic	-29108	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
179352	chr4	183250051	183250150	+	0	NA	intron (NM_024949, intron 8 of 22)	intron (NM_024949, intron 8 of 22)	-9466	NR_126473	101928734		NR_126473	ENSG00000251128	WWC2-AS1	-	WWC2 antisense RNA 1	ncRNA
22654	chr1	223758071	223758230	+	0	NA	intron (NM_001748, intron 11 of 20)	AluSx|SINE|Alu	45611	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
41280	chr11	65852571	65853750	+	0	NA	intron (NM_152760, intron 12 of 12)	intron (NM_152760, intron 12 of 12)	5020	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
37758	chr11	32006771	32007100	+	0	NA	Intergenic	Intergenic	34383	NR_120526	100506675		NR_120526	ENSG00000254584	LINC03031	-	long intergenic non-protein coding RNA 3031	ncRNA
58007	chr12	124373401	124373600	+	0	NA	intron (NM_001077261, intron 20 of 47)	intron (NM_001077261, intron 20 of 47)	-36258	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
91452	chr17	4797571	4797930	+	0	NA	exon (NM_002798, exon 4 of 6)	exon (NM_002798, exon 4 of 6)	1586	NM_002798	5694		NM_002798	ENSG00000142507	PSMB6	DELTA|LMPY	proteasome 20S subunit beta 6	protein-coding
102993	chr17	76740671	76740830	+	0	NA	intron (NR_148239, intron 3 of 12)	intron (NR_148239, intron 3 of 12)	3072	NM_001242532	79157		NM_024311	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
196061	chr6	42166351	42166930	+	0	NA	intron (NM_001319061, intron 2 of 5)	intron (NM_001319061, intron 2 of 5)	-6724	NM_001384910	2978		NM_001384910	ENSG00000048545	GUCA1A	C6orf131|COD3|CORD14|GCAP|GCAP-1|GCAP-I|GCAP1|GUCA|GUCA1	guanylate cyclase activator 1A	protein-coding
234643	chrX	20116271	20117180	+	0	NA	promoter-TSS (NM_001168467)	promoter-TSS (NM_001168467)	-85	NM_001168467	256714		NM_152780	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
86700	chr16	67536501	67539330	+	0	NA	intron (NM_001193524, intron 1 of 21)	CpG	453	NM_001193524	79567		NM_024519	ENSG00000039523	RIPOR1	FAM65A	RHO family interacting cell polarization regulator 1	protein-coding
143585	chr20	31678901	31679580	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	41328	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
10640	chr1	70219871	70220230	+	0	NA	intron (NM_001350606, intron 1 of 12)	intron (NM_001350606, intron 1 of 12)	-1330	NM_001350612	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
183616	chr5	80217951	80218050	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	38048	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
22215	chr1	212488551	212488850	+	0	NA	Intergenic	Intergenic	55780	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
156692	chr22	41673001	41673780	+	0	NA	TTS (NM_005008)	TTS (NM_005008)	15477	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
39453	chr11	60955451	60955950	+	0	NA	Intergenic	Intergenic	-3524	NR_027391	51296		NM_016582	ENSG00000110446	SLC15A3	OCTP|PHT2|PTR3|hPHT2	solute carrier family 15 member 3	protein-coding
176285	chr4	87111671	87112230	+	0	NA	intron (NM_001313959, intron 10 of 19)	intron (NM_001313959, intron 10 of 19)	104949	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
116612	chr19	18283471	18283730	+	0	NA	Intergenic	Intergenic	1523	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
97908	chr17	45129321	45129850	+	0	NA	intron (NM_133373, intron 1 of 14)	MIRb|SINE|MIR	2930	NM_133373	113026		NM_133373	ENSG00000161714	PLCD3	PLC-delta-3	phospholipase C delta 3	protein-coding
37278	chr11	14683971	14684580	+	0	NA	intron (NM_001363569, intron 1 of 15)	MER11A|LTR|ERVK	40471	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
197194	chr6	63585801	63586200	+	0	NA	Intergenic	L1PA10|LINE|L1	13520	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
25573	chr10	7787321	7789050	+	0	NA	promoter-TSS (NM_005174)	promoter-TSS (NM_005174)	8	NM_001001973	509		NM_005174	ENSG00000165629	ATP5F1C	ATP5C|ATP5C1|ATP5CL1	ATP synthase F1 subunit gamma	protein-coding
118547	chr19	36122251	36122850	+	0	NA	intron (NR_155756, intron 4 of 5)	AluJo|SINE|Alu	6780	NM_001300971	1155		NM_001281	ENSG00000105254	TBCB	CG22|CKAP1|CKAPI	tubulin folding cofactor B	protein-coding
123271	chr19	53469251	53469780	+	0	NA	intron (NM_001004301, intron 1 of 3)	intron (NM_001004301, intron 1 of 3)	1782	NM_001004301	126017		NM_001004301	ENSG00000198346	ZNF813	-	zinc finger protein 813	protein-coding
57473	chr12	122028901	122030850	+	0	NA	intron (NM_020993, intron 1 of 5)	L2|LINE|L2	7991	NM_001024808	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
125637	chr2	19364021	19364680	+	0	NA	Intergenic	Intergenic	-5727	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
206553	chr7	35647171	35647330	+	0	NA	intron (NM_022373, intron 5 of 8)	L2c|LINE|L2	47885	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
72081	chr15	28907771	28908330	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	-13587	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
194400	chr6	33007351	33007980	+	0	NA	intron (NM_002119, intron 2 of 4)	intron (NM_002119, intron 2 of 4)	1926	NM_002119	3111		NM_002119	ENSG00000204252	HLA-DOA	HLA-DNA|HLA-DZA|HLADZ	major histocompatibility complex, class II, DO alpha	protein-coding
209750	chr7	87203371	87203930	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	16082	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
56276	chr12	112111671	112111830	+	0	NA	Intergenic	AluY|SINE|Alu	-2967	NM_024953	80018		NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N-alpha-acetyltransferase 25, NatB auxiliary subunit	protein-coding
59258	chr13	24063271	24063830	+	0	NA	intron (NM_001286792, intron 3 of 14)	L2|LINE|L2	83748	NR_104595	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
227090	chr9	85717281	85717780	+	0	NA	intron (NM_001330701, intron 1 of 25)	intron (NM_001330701, intron 1 of 25)	24424	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
44613	chr11	108654951	108655250	+	0	NA	Intergenic	Intergenic	-9969	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
43863	chr11	88307701	88307900	+	0	NA	intron (NM_001814, intron 4 of 6)	intron (NM_001814, intron 4 of 6)	29936	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
158441	chr22	50606051	50606930	+	0	NA	intron (NM_012324, intron 8 of 11)	intron (NM_012324, intron 8 of 11)	5697	NM_012324	23542		NM_012324	ENSG00000008735	MAPK8IP2	IB-2|IB2|JIP2|PRKM8IPL	mitogen-activated protein kinase 8 interacting protein 2	protein-coding
234744	chrX	22135851	22136430	+	0	NA	intron (NM_001282754, intron 12 of 20)	intron (NM_001282754, intron 12 of 20)	36843	NR_046639	100873942		NR_046639	ENSG00000224204	PHEX-AS1	-	PHEX antisense RNA 1	ncRNA
57325	chr12	121686521	121688780	+	0	NA	Intergenic	AluSq2|SINE|Alu	-15006	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
78845	chr15	99928001	99929280	+	0	NA	Intergenic	Intergenic	121617	NR_135737	400464		NM_001013670		LOC400464	-	ubiquitin conjugating enzyme E2 Q2 pseudogene	pseudo
6511	chr1	28517661	28519580	+	0	NA	intron (NM_001048195, intron 1 of 10)	CpG	394	NM_001048194	1104		NM_001269	ENSG00000180198	RCC1	CHC1|RCC1-I	regulator of chromosome condensation 1	protein-coding
56083	chr12	110659151	110659600	+	0	NA	intron (NM_032369, intron 4 of 7)	intron (NM_032369, intron 4 of 7)	29740	NM_032369	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
223455	chr8	143989821	143991650	+	0	NA	intron (NM_000837, intron 1 of 6)	CpG	677	NM_000837	2907		NM_000837	ENSG00000178719	GRINA	HNRGW|LFG1|NMDARA1|TMBIM3	glutamate ionotropic receptor NMDA type subunit associated protein 1	protein-coding
85445	chr16	50551171	50551730	+	0	NA	intron (NM_033119, intron 3 of 9)	intron (NM_033119, intron 3 of 9)	3054	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
148440	chr20	63975801	63976180	+	0	NA	intron (NM_080621, intron 3 of 4)	AluSz|SINE|Alu	3652	NM_080621	140700		NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding
153809	chr22	29713921	29714350	+	0	NA	Intergenic	Intergenic	-5868	NM_182527	164633		NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding
137376	chr2	196184971	196185630	+	0	NA	Intergenic	AluJb|SINE|Alu	-13722	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
236446	chrX	71543051	71543980	+	0	NA	intron (NM_181672, intron 3 of 21)	intron (NM_181672, intron 3 of 21)	10411	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
83924	chr16	29038451	29038550	+	0	NA	Intergenic	(CTCCTC)n|Simple_repeat|Simple_repeat	-36342	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
205328	chr7	12519171	12519480	+	0	NA	intron (NR_136263, intron 1 of 3)	L1MA4A|LINE|L1	14928	NR_136263	102725191		NM_001386512	ENSG00000226690	C7orf78	-	chromosome 7 open reading frame 78	protein-coding
9169	chr1	45587921	45588250	+	0	NA	intron (NM_001195193, intron 1 of 12)	AluSz6|SINE|Alu	4044	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
7901	chr1	36688551	36688850	+	0	NA	Intergenic	Intergenic	-205386	NM_156039	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
4590	chr1	22075801	22076850	+	0	NA	intron (NM_001039802, intron 2 of 6)	AluSz|SINE|Alu	23616	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
13979	chr1	120561841	120562530	+	0	NA	TTS (NR_168400)	TTS (NR_168400)	3500	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
50381	chr12	47227471	47228350	+	0	NA	intron (NM_138371, intron 3 of 3)	intron (NM_138371, intron 3 of 3)	-11467	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
54655	chr12	93245471	93246050	+	0	NA	intron (NR_040096, intron 2 of 4)	intron (NR_040096, intron 2 of 4)	71394	NR_120492	102724933		NR_120492		LINC02412	-	long intergenic non-protein coding RNA 2412	ncRNA
31885	chr10	100269121	100269580	+	0	NA	Intergenic	AluJr|SINE|Alu	-1712	NM_001303407	55280		NM_018294	ENSG00000095485	CWF19L1	C19L1|SCAR17|hDrn1	CWF19 like cell cycle control factor 1	protein-coding
110120	chr19	1575751	1576050	+	0	NA	3' UTR (NM_001281454, exon 7 of 7)	3' UTR (NM_001281454, exon 7 of 7)	-7575	NM_001174118	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
141851	chr20	545621	545930	+	0	NA	Intergenic	L2a|LINE|L2	-1985	NM_177560	1457		NM_001895	ENSG00000101266	CSNK2A1	CK2A1|CKII|Cka1|Cka2|OCNDS	casein kinase 2 alpha 1	protein-coding
231571	chr9	131499201	131499680	+	0	NA	3' UTR (NM_001384822, exon 31 of 31)	3' UTR (NM_001384822, exon 31 of 31)	-3478	NM_001374695	10585		NM_007171	ENSG00000130714	POMT1	LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT	protein O-mannosyltransferase 1	protein-coding
210626	chr7	100447051	100447830	+	0	NA	Intergenic	(GAGGCT)n|Simple_repeat|Simple_repeat	-10943	NM_001346938	221908		NM_145030	ENSG00000160813	PPP1R35	C7orf47	protein phosphatase 1 regulatory subunit 35	protein-coding
157354	chr22	44684201	44685200	+	0	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	7615	NM_001198721	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
89180	chr16	88557501	88557900	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	4283	NR_146877	400555		NM_001001682		ZC3H18-AS1	C16orf85|LINC00859	ZC3H18 antisense RNA 1 (head to head)	ncRNA
211523	chr7	105332521	105332830	+	0	NA	intron (NM_001350742, intron 2 of 16)	AluSx1|SINE|Alu	-33896	NM_001278273	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
171414	chr3	196214021	196214280	+	0	NA	Intergenic	AluSx|SINE|Alu	-2384	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
40249	chr11	63669271	63669630	+	0	NA	intron (NM_001290048, intron 1 of 12)	AluSx1|SINE|Alu	1926	NM_015459	25923		NM_015459	ENSG00000184743	ATL3	HSN1F	atlastin GTPase 3	protein-coding
225563	chr9	35914201	35916530	+	0	NA	Intergenic	AluSz6|SINE|Alu	5875	NM_001348107	158376		NM_001348107	ENSG00000235387	SPAAR	LINC00961|SPAR	small regulatory polypeptide of amino acid response	protein-coding
124979	chr2	9003221	9004900	+	0	NA	promoter-TSS (NM_138799)	promoter-TSS (NM_138799)	-376	NR_135604	129642		NM_138799	ENSG00000143797	MBOAT2	LPAAT|LPCAT|LPCAT4|LPEAT|LPLAT 2|LPLAT13|OACT2	membrane bound O-acyltransferase domain containing 2	protein-coding
219532	chr8	75664971	75665130	+	0	NA	Intergenic	LTR12C|LTR|ERV1	125181	NM_004133	3174		NM_004133	ENSG00000164749	HNF4G	NR2A2|NR2A3	hepatocyte nuclear factor 4 gamma	protein-coding
71904	chr15	22720051	22720150	+	0	NA	Intergenic	Intergenic	-37757	NR_040057	283683		NR_040057	ENSG00000274253	LOC283683	-	uncharacterized LOC283683	ncRNA
228897	chr9	112793201	112793500	+	0	NA	intron (NM_001012994, intron 1 of 8)	intron (NM_001012994, intron 1 of 8)	42590	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
83677	chr16	28375101	28376700	+	0	NA	Intergenic	AluSx|SINE|Alu	-13040	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
199819	chr6	127554551	127554650	+	0	NA	Intergenic	Intergenic	-22574	NM_001010905	352999		NM_001010905	ENSG00000184530	C6orf58	LEG1	chromosome 6 open reading frame 58	protein-coding
99651	chr17	50697721	50698130	+	0	NA	intron (NM_052855, intron 3 of 4)	L1MC4|LINE|L1	9989	NM_052855	91369		NM_052855	ENSG00000154945	ANKRD40	-	ankyrin repeat domain 40	protein-coding
41466	chr11	66129551	66129850	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	59428	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
178484	chr4	148452321	148452580	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-7752	NM_001354819	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
151850	chr22	18560101	18561180	+	0	NA	Intergenic	Charlie18a|DNA|hAT-Charlie	-11812	NR_003563	728233		NR_003563	ENSG00000290425	PI4KAP1	-	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudo
17604	chr1	156896401	156896630	+	0	NA	intron (NM_001080471, intron 1 of 22)	intron (NM_001080471, intron 1 of 22)	2797	NM_001353683	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
212558	chr7	128878701	128878900	+	0	NA	intron (NM_001366122, intron 37 of 39)	intron (NM_001366122, intron 37 of 39)	12470	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
60169	chr13	40186171	40186330	+	0	NA	non-coding (NR_046870, exon 2 of 4)	non-coding (NR_046870, exon 2 of 4)	4441	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
207841	chr7	50343601	50344730	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	25117	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
224072	chr9	4117721	4118150	+	0	NA	exon (NM_152629, exon 3 of 10)	exon (NM_152629, exon 3 of 10)	34248	NM_152629	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
82692	chr16	20691621	20691880	+	0	NA	promoter-TSS (NR_134918)	promoter-TSS (NR_134918)	-494	NM_052956	116285		NM_052956	ENSG00000166743	ACSM1	BUCS1|MACS1	acyl-CoA synthetase medium chain family member 1	protein-coding
64710	chr14	34098771	34098930	+	0	NA	Intergenic	Intergenic	-147776	NM_022073	112399		NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding
141965	chr20	1321351	1321850	+	0	NA	intron (NR_037661, intron 2 of 9)	L2c|LINE|L2	-3743	NR_040047	100507495		NR_040047	ENSG00000234684	SDCBP2-AS1	-	SDCBP2 antisense RNA 1	ncRNA
180262	chr5	1737651	1738050	+	0	NA	Intergenic	Intergenic	-28982	NR_036240	100422966		NR_036240	ENSG00000263746	MIR4277	-	microRNA 4277	ncRNA
28553	chr10	50607701	50607900	+	0	NA	intron (NM_147156, intron 1 of 10)	intron (NM_147156, intron 1 of 10)	16156	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
183134	chr5	74919521	74920050	+	0	NA	Intergenic	Intergenic	-52819	NM_015566	26049		NM_015566	ENSG00000198780	FAM169A	SLAP|SLAP75	family with sequence similarity 169 member A	protein-coding
150032	chr21	37282621	37283080	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-14742	NM_001331018	10311		NM_006052	ENSG00000157538	VPS26C	DCRA|DSCR3|DSCRA	VPS26 endosomal protein sorting factor C	protein-coding
228436	chr9	99827521	99828000	+	0	NA	intron (NM_173200, intron 3 of 8)	intron (NM_173200, intron 3 of 8)	5875	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
172790	chr4	2947921	2948180	+	0	NA	intron (NM_001291978, intron 9 of 17)	intron (NM_001291978, intron 9 of 17)	12504	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
83368	chr16	25126601	25127080	+	0	NA	intron (NM_001032391, intron 1 of 8)	L3|LINE|CR1	15098	NM_001032391	51451		NM_016015	ENSG00000205629	LCMT1	CGI-68|LCMT|PPMT1	leucine carboxyl methyltransferase 1	protein-coding
42664	chr11	72571671	72572030	+	0	NA	non-coding (NR_126364, exon 2 of 2)	non-coding (NR_126364, exon 2 of 2)	1194	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
5600	chr1	26040371	26040530	+	0	NA	intron (NM_032513, intron 5 of 6)	AluSx|SINE|Alu	5668	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
3335	chr1	15429721	15429980	+	0	NA	3' UTR (NM_024329, exon 4 of 4)	3' UTR (NM_024329, exon 4 of 4)	-8593	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
3283	chr1	15252851	15253230	+	0	NA	intron (NM_052929, intron 2 of 30)	L1MD2|LINE|L1	5815	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
172461	chr4	2011351	2011850	+	0	NA	Intergenic	L1M5|LINE|L1	-2626	NM_005663	7469		NM_005663	ENSG00000185049	NELFA	NELF-A|P/OKcl.15|WHSC2	negative elongation factor complex member A	protein-coding
197929	chr6	89792951	89793300	+	0	NA	intron (NM_014611, intron 5 of 101)	intron (NM_014611, intron 5 of 101)	26669	NM_014611	23195		NM_014611	ENSG00000112159	MDN1	Rea1	midasin AAA ATPase 1	protein-coding
164431	chr3	59069951	59070050	+	0	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-19968	NM_001351534	200844		NM_198463	ENSG00000163689	CFAP20DC	C3orf67	CFAP20 domain containing	protein-coding
135512	chr2	162015671	162015830	+	0	NA	intron (NR_166824, intron 18 of 25)	intron (NR_166824, intron 18 of 25)	58465	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
173158	chr4	6684671	6685030	+	0	NA	Intergenic	Intergenic	5669	NR_147207	339988		NR_147207	ENSG00000246526	LINC02481	LINC002481	long intergenic non-protein coding RNA 2481	ncRNA
118825	chr19	38562851	38563350	+	0	NA	intron (NM_000540, intron 90 of 105)	intron (NM_000540, intron 90 of 105)	-33247	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
45983	chr11	121480571	121481200	+	0	NA	intron (NR_169501, intron 1 of 5)	intron (NR_169501, intron 1 of 5)	904	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
145147	chr20	38831001	38831550	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	25578	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
134729	chr2	144570651	144571150	+	0	NA	intron (NR_110570, intron 2 of 2)	intron (NR_110570, intron 2 of 2)	-46456	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
62032	chr13	88376771	88377230	+	0	NA	Intergenic	Intergenic	-163829	NR_047021	100874168		NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	ncRNA
204727	chr7	5554551	5554900	+	0	NA	Intergenic	Intergenic	-24124	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
16235	chr1	153945901	153947400	+	0	NA	promoter-TSS (NM_014856)	promoter-TSS (NM_014856)	68	NM_014856	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
43303	chr11	76207511	76208050	+	0	NA	Intergenic	CpG-4722	-1278	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
1975	chr1	6597701	6597900	+	0	NA	intron (NM_014851, intron 2 of 3)	intron (NM_014851, intron 2 of 3)	5069	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
76386	chr15	74618651	74618750	+	0	NA	intron (NM_001130028, intron 1 of 12)	intron (NM_001130028, intron 1 of 12)	2864	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
87091	chr16	68518501	68518700	+	0	NA	Intergenic	AluJo|SINE|Alu	-20613	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
50480	chr12	47778451	47778550	+	0	NA	intron (NM_017842, intron 1 of 2)	intron (NM_017842, intron 1 of 2)	5262	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
157866	chr22	49502151	49502450	+	0	NA	intron (NR_110523, intron 1 of 4)	intron (NR_110523, intron 1 of 4)	41166	NR_037440	100500882		NR_037440	ENSG00000264139	MIR3667	-	microRNA 3667	ncRNA
16153	chr1	153697921	153698380	+	0	NA	Intergenic	Intergenic	-8357	NR_107050	102466879		NR_107050	ENSG00000274940	MIR8083	hsa-mir-8083	microRNA 8083	ncRNA
235669	chrX	48576951	48577450	+	0	NA	intron (NM_006743, intron 6 of 6)	intron (NM_006743, intron 6 of 6)	2716	NM_006743	5935		NM_006743	ENSG00000102317	RBM3	IS1-RNPL|RNPL	RNA binding motif protein 3	protein-coding
186403	chr5	135387051	135387350	+	0	NA	intron (NM_138610, intron 2 of 8)	MIRb|SINE|MIR	12031	NM_138610	9555		NM_004893	ENSG00000113648	MACROH2A1	H2A.y|H2A/y|H2AF12M|H2AFY|MACROH2A1.1|mH2A1|macroH2A1.2	macroH2A.1 histone	protein-coding
138795	chr2	216113001	216113200	+	0	NA	exon (NM_021141, exon 2 of 21)	exon (NM_021141, exon 2 of 21)	3752	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
105667	chr18	2605121	2605950	+	0	NA	intron (NM_006101, intron 13 of 16)	intron (NM_006101, intron 13 of 16)	33978	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
22488	chr1	221727571	221728430	+	0	NA	intron (NR_111940, intron 1 of 2)	MSTD|LTR|ERVL-MaLR	8900	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
122344	chr19	49225901	49226580	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	68448	NM_001321283	54795		NM_017636	ENSG00000130529	TRPM4	EKVP6|LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
74469	chr15	59794371	59795200	+	0	NA	Intergenic	Intergenic	-105465	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
154819	chr22	37048001	37048400	+	0	NA	Intergenic	Intergenic	-3536	NM_001282684	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
224988	chr9	33106351	33106780	+	0	NA	intron (NM_001378497, intron 2 of 2)	intron (NM_001378497, intron 2 of 2)	-2127	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
114899	chr19	13920451	13920550	+	0	NA	intron (NM_017721, intron 12 of 28)	intron (NM_017721, intron 12 of 28)	14299	NM_017721	54862		NM_017721	ENSG00000132024	CC2D1A	Aki-1|FREUD-1|Freud-1/Aki1|Lgd2|MRT3|TAPE	coiled-coil and C2 domain containing 1A	protein-coding
41855	chr11	67164871	67165430	+	0	NA	intron (NM_012308, intron 2 of 20)	AluSp|SINE|Alu	45887	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
110397	chr19	1944851	1945430	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	3968	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
150317	chr21	42009221	42011880	+	0	NA	promoter-TSS (NM_001098403)	promoter-TSS (NM_001098403)	-190	NM_001320729	49854		NM_020727	ENSG00000173276	ZBTB21	ZNF295	zinc finger and BTB domain containing 21	protein-coding
25222	chr10	5811271	5811730	+	0	NA	intron (NM_001115156, intron 1 of 9)	intron (NM_001115156, intron 1 of 9)	1934	NM_001494	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
218977	chr8	61710671	61711290	+	0	NA	intron (NM_032466, intron 1 of 13)	intron (NM_032466, intron 1 of 13)	3612	NM_004318	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
211338	chr7	104939071	104939380	+	0	NA	Intergenic	MIRb|SINE|MIR	-12580	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
66377	chr14	61483321	61485000	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	86034	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
124524	chr2	192851	193550	+	0	NA	Intergenic	Intergenic	63140	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
36015	chr11	2907751	2908050	+	0	NA	intron (NM_183233, intron 2 of 10)	intron (NM_183233, intron 2 of 10)	-4325	NR_169304	5003		NM_007105	ENSG00000254827	SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	SLC22A18 antisense RNA	ncRNA
167027	chr3	126466071	126466230	+	0	NA	intron (NR_104249, intron 5 of 8)	intron (NR_104249, intron 5 of 8)	9741	NM_025112	79364		NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding
70271	chr14	101726391	101727380	+	0	NA	Intergenic	Intergenic	-3552	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
170041	chr3	182710451	182710800	+	0	NA	Intergenic	Intergenic	-82879	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
221058	chr8	116863451	116864100	+	0	NA	intron (NM_006265, intron 2 of 13)	intron (NM_006265, intron 2 of 13)	-10649	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
51813	chr12	53423551	53423980	+	0	NA	promoter-TSS (NM_001164691)	promoter-TSS (NM_001164691)	-90	NM_001164691	269		NM_020547	ENSG00000135409	AMHR2	AMHR|MISR2|MISRII|MRII	anti-Mullerian hormone receptor type 2	protein-coding
235580	chrX	47555871	47556830	+	0	NA	Intergenic	Intergenic	-4750	NM_001256196	369		NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
67631	chr14	73028421	73029080	+	0	NA	Intergenic	AluSg|SINE|Alu	-1644	NM_021260	53349		NM_021260	ENSG00000165861	ZFYVE1	DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1	zinc finger FYVE-type containing 1	protein-coding
193410	chr6	30443751	30444730	+	0	NA	Intergenic	Intergenic	-45269	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
94833	chr17	31437171	31437830	+	0	NA	intron (NM_032932, intron 3 of 14)	intron (NM_032932, intron 3 of 14)	45825	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
49483	chr12	25220601	25220800	+	0	NA	intron (NM_033360, intron 4 of 5)	AluSc|SINE|Alu	25463	NM_001001660	144363		NM_001001660	ENSG00000205707	ETFRF1	LYRM5	electron transfer flavoprotein regulatory factor 1	protein-coding
208498	chr7	69199171	69199330	+	0	NA	Intergenic	Intergenic	398374	NR_148926	100507468		NR_108105	ENSG00000234215	CT66	-	cancer/testis associated transcript 66	ncRNA
139303	chr2	219525471	219526050	+	0	NA	intron (NM_182847, intron 1 of 8)	intron (NM_182847, intron 1 of 8)	11278	NM_018674	55515		NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding
201695	chr6	149645251	149645550	+	0	NA	intron (NM_007044, intron 1 of 10)	AluY|SINE|Alu	3314	NM_007044	11104		NM_007044	ENSG00000186625	KATNA1	-	katanin catalytic subunit A1	protein-coding
31770	chr10	98132971	98133400	+	0	NA	Intergenic	LTR2B|LTR|ERV1	-1439	NM_001256620	27291		NM_014472	ENSG00000166024	R3HCC1L	C10orf28|GIDRP86|GIDRP88|PSORT	R3H domain and coiled-coil containing 1 like	protein-coding
197574	chr6	79782851	79782950	+	0	NA	Intergenic	Intergenic	29346	NR_131786	89758		NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
28655	chr10	59892651	59892950	+	0	NA	intron (NM_005436, intron 1 of 8)	MIRc|SINE|MIR	13756	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
188016	chr5	149552871	149553230	+	0	NA	Intergenic	Intergenic	-1611	NM_001025105	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
69029	chr14	91817851	91818380	+	0	NA	intron (NM_001128596, intron 1 of 11)	L1ME2|LINE|L1	18340	NM_152332	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
66668	chr14	63902521	63902850	+	0	NA	intron (NM_015180, intron 1 of 114)	AluJb|SINE|Alu	49681	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
184956	chr5	113181671	113182230	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	112988	NM_002387	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
71828	chr15	22176721	22176980	+	0	NA	Intergenic	L1MC3|LINE|L1	1746	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
98203	chr17	46130151	46130250	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluJb|SINE|Alu	62582	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
222023	chr8	130094651	130095450	+	0	NA	intron (NM_001362924, intron 25 of 30)	intron (NM_001362924, intron 25 of 30)	-10282	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
162129	chr3	46941501	46941700	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	34901	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
147737	chr20	62399251	62399750	+	0	NA	intron (NM_031215, intron 1 of 9)	AluY|SINE|Alu	7783	NM_031215	81928		NM_031215	ENSG00000149679	CABLES2	C20orf150|dJ908M14.2|ik3-2	Cdk5 and Abl enzyme substrate 2	protein-coding
95226	chr17	35257821	35258080	+	0	NA	intron (NM_144975, intron 1 of 4)	intron (NM_144975, intron 1 of 4)	14878	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
75129	chr15	64572951	64573450	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	112622	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
71121	chr14	104932971	104934230	+	0	NA	TTS (NM_138790)	TTS (NM_138790)	8721	NM_001308174	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
181086	chr5	36877941	36878900	+	0	NA	intron (NM_133433, intron 1 of 46)	intron (NM_133433, intron 1 of 46)	1651	NM_133433	25836		NM_015384	ENSG00000164190	NIPBL	CDLS|CDLS1|IDN3|IDN3-B|Scc2	NIPBL cohesin loading factor	protein-coding
23447	chr1	228454971	228455400	+	0	NA	Intergenic	AluSx1|SINE|Alu	2688	NM_033445	92815		NM_033445	ENSG00000181218	H2AC25	H2AW|HIST3H2A	H2A clustered histone 25	protein-coding
191545	chr6	11532371	11532530	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	-5299	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
142316	chr20	3665471	3666830	+	0	NA	Intergenic	Intergenic	-2751	NM_145762	64096		NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding
184606	chr5	103260771	103261180	+	0	NA	intron (NM_001377287, intron 1 of 2)	intron (NM_001377287, intron 1 of 2)	1069	NM_001377287	90355		NM_033211	ENSG00000181751	MACIR	C5orf30	macrophage immunometabolism regulator	protein-coding
220325	chr8	98939571	98940250	+	0	NA	intron (NM_001256312, intron 1 of 12)	CpG	2700	NM_001256312	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
163487	chr3	50950601	50951100	+	0	NA	intron (NM_004947, intron 5 of 52)	intron (NM_004947, intron 5 of 52)	275770	NR_039950	100616138		NR_039950	ENSG00000272543	MIR4787	mir-4787	microRNA 4787	ncRNA
38973	chr11	47554471	47554630	+	0	NA	intron (NM_001376458, intron 1 of 13)	L2a|LINE|L2	-1418	NM_001376421	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
134268	chr2	135732271	135732750	+	0	NA	Intergenic	Intergenic	-9345	NM_014607	23190		NM_014607	ENSG00000144224	UBXN4	UBXD2|UBXDC1|erasin	UBX domain protein 4	protein-coding
4338	chr1	20522271	20522930	+	0	NA	Intergenic	Intergenic	-14449	NM_024544	79594		NM_024544	ENSG00000090432	MUL1	C1orf166|GIDE|MAPL|MULAN|RNF218	mitochondrial E3 ubiquitin protein ligase 1	protein-coding
100401	chr17	60356951	60357050	+	0	NA	intron (NM_032582, intron 1 of 33)	L1M4|LINE|L1	35133	NM_032582	84669		NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding
92067	chr17	7514541	7515530	+	0	NA	TTS (NM_000937).2	TTS (NM_000937).2	30669	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
77682	chr15	85620121	85621400	+	0	NA	intron (NM_001270546, intron 1 of 28)	intron (NM_001270546, intron 1 of 28)	810	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
224549	chr9	19376251	19376580	+	0	NA	intron (NM_001010, intron 5 of 5)	intron (NM_001010, intron 5 of 5)	3821	NM_001010	6194		NM_001010	ENSG00000137154	RPS6	S6|eS6	ribosomal protein S6	protein-coding
83808	chr16	28829551	28829850	+	0	NA	intron (NM_148416, intron 7 of 22)	intron (NM_148416, intron 7 of 22)	6652	NM_007245	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
213770	chr7	140671701	140671900	+	0	NA	Intergenic	Intergenic	-1145	NM_052853	90956		NM_052853	ENSG00000133597	ADCK2	AARF	aarF domain containing kinase 2	protein-coding
208466	chr7	66989121	66989650	+	0	NA	intron (NM_016038, intron 4 of 4)	AluSp|SINE|Alu	6201	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
232638	chr9	136462101	136462850	+	0	NA	intron (NM_014866, intron 12 of 31)	intron (NM_014866, intron 12 of 31)	-20535	NM_152571	158055		NM_152571	ENSG00000196366	C9orf163	-	chromosome 9 putative open reading frame 163	ncRNA
180360	chr5	6780871	6781050	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-14920	NR_146281	109729133		NR_146281	ENSG00000251365	LINC02236	-	long intergenic non-protein coding RNA 2236	ncRNA
11982	chr1	94481501	94481800	+	0	NA	intron (NM_002858, intron 9 of 22)	MLT1L|LTR|ERVL-MaLR	60109	NM_001993	2152		NM_001993	ENSG00000117525	F3	CD142|TF|TFA	coagulation factor III, tissue factor	protein-coding
35953	chr11	2697321	2697680	+	0	NA	non-coding (NR_002728, exon 1 of 1)	non-coding (NR_002728, exon 1 of 1)	2498	NR_002728	10984		NR_002728	ENSG00000269821	KCNQ1OT1	KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012	KCNQ1 opposite strand/antisense transcript 1	ncRNA
119928	chr19	41785551	41786080	+	0	NA	Intergenic	Intergenic	-10772	NM_001815	1084		NM_001815	ENSG00000170956	CEACAM3	CD66D|CEA|CGM1|CGM1a|W264|W282	CEA cell adhesion molecule 3	protein-coding
139009	chr2	218370451	218370550	+	0	NA	Intergenic	Intergenic	-2598	NR_110573	101928513		NR_110573	ENSG00000225062	CATIP-AS1	-	CATIP antisense RNA 1	ncRNA
131941	chr2	99158651	99159280	+	0	NA	intron (NM_145198, intron 3 of 3)	AluYj4|SINE|Alu	3891	NR_037935	51601		NM_015929	ENSG00000144182	LIPT1	LIPT1D	lipoyltransferase 1	protein-coding
209007	chr7	74275201	74275600	+	0	NA	Intergenic	Intergenic	-14007	NM_032421	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
118238	chr19	35213381	35215150	+	0	NA	Intergenic	Intergenic	14460	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
160125	chr3	20038871	20039030	+	0	NA	Intergenic	Intergenic	-1496	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
174076	chr4	27000851	27001530	+	0	NA	intron (NM_020860, intron 5 of 11)	intron (NM_020860, intron 5 of 11)	140349	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
83101	chr16	22451771	22452500	+	0	NA	intron (NR_027154, intron 1 of 28)	intron (NR_027154, intron 1 of 28)	-14420	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
219584	chr8	79770601	79770800	+	0	NA	non-coding (NR_110954, exon 6 of 6)	non-coding (NR_110954, exon 6 of 6)	2558	NR_125410	101927067		NR_125410	ENSG00000272138	LINC01607	-	long intergenic non-protein coding RNA 1607	ncRNA
25714	chr10	9002501	9003300	+	0	NA	Intergenic	Intergenic	104911	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
177624	chr4	121180301	121180980	+	0	NA	intron (NM_001128843, intron 3 of 12)	intron (NM_001128843, intron 3 of 12)	-16319	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
178432	chr4	147799621	147800630	+	0	NA	intron (NM_024605, intron 1 of 22)	L1MDb|LINE|L1	17530	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
134296	chr2	135950671	135951030	+	0	NA	intron (NM_001293312, intron 3 of 14)	intron (NM_001293312, intron 3 of 14)	-34326	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
162994	chr3	49723241	49725080	+	0	NA	promoter-TSS (NM_013334)	promoter-TSS (NM_013334)	-186	NM_013334	29925		NM_013334	ENSG00000173540	GMPPB	LGMDR19|MDDGA14|MDDGB14|MDDGC14	GDP-mannose pyrophosphorylase B	protein-coding
191827	chr6	14784851	14785250	+	0	NA	Intergenic	Intergenic	-461019	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
25675	chr10	8406701	8406980	+	0	NA	Intergenic	Intergenic	-138535	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
222329	chr8	133521971	133522830	+	0	NA	intron (NM_173344, intron 2 of 9)	MIRc|SINE|MIR	49487	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
140204	chr2	231701551	231702250	+	0	NA	Intergenic	Intergenic	-6625	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
126657	chr2	29001801	29002580	+	0	NA	intron (NM_199280, intron 4 of 19)	MIRc|SINE|MIR	20892	NM_001321538	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
149401	chr21	31164851	31164950	+	0	NA	intron (NM_001353694, intron 16 of 27)	intron (NM_001353694, intron 16 of 27)	-3960	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
4940	chr1	23962251	23962550	+	0	NA	3' UTR (NM_017761, exon 3 of 3)	3' UTR (NM_017761, exon 3 of 3)	2572	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
205533	chr7	19665251	19665580	+	0	NA	Intergenic	Intergenic	40021	NR_036101	100422967		NR_036101	ENSG00000265932	MIR3146	mir-3146	microRNA 3146	ncRNA
75097	chr15	64449871	64450280	+	0	NA	intron (NR_135855, intron 11 of 11)	intron (NR_135855, intron 11 of 11)	-10503	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
65293	chr14	50057371	50057730	+	0	NA	intron (NR_131171, intron 2 of 8)	MLT1A|LTR|ERVL-MaLR	47493	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
53416	chr12	64758801	64759880	+	0	NA	promoter-TSS (NM_001330187)	promoter-TSS (NM_001330187)	66	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
89945	chr16	89742371	89742550	+	0	NA	intron (NM_001286167, intron 37 of 42)	intron (NM_001286167, intron 37 of 42)	20923	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
97824	chr17	44897721	44897980	+	0	NA	intron (NM_001258354, intron 1 of 27)	AluSx1|SINE|Alu	1518	NM_001258353	9343		NM_004247	ENSG00000108883	EFTUD2	MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD	elongation factor Tu GTP binding domain containing 2	protein-coding
107452	chr18	46416851	46416950	+	0	NA	intron (NM_001256758, intron 1 of 5)	MLT1H|LTR|ERVL-MaLR	82676	NM_001256758	494470		NM_152470	ENSG00000141622	ARK2C	ARKL2|RNF111L2|RNF165|lncAMPC	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C	protein-coding
44515	chr11	107565101	107566200	+	0	NA	promoter-TSS (NM_138775)	promoter-TSS (NM_138775)	85	NM_138775	91801		NM_138775	ENSG00000137760	ALKBH8	ABH8|MRT71|TRM9|TRMT9|TRMT9A	alkB homolog 8, tRNA methyltransferase	protein-coding
168820	chr3	152233571	152234130	+	0	NA	Intergenic	Intergenic	-9782	NM_001376839	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
117818	chr19	29966121	29966380	+	0	NA	intron (NR_045557, intron 1 of 9)	AluSx|SINE|Alu	24011	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
157898	chr22	49757001	49757200	+	0	NA	Intergenic	Intergenic	67231	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
183182	chr5	75566401	75567150	+	0	NA	intron (NM_016218, intron 3 of 14)	L1PA7|LINE|L1	-44678	NM_001276713	728780		NM_001271529	ENSG00000189045	ANKDD1B	-	ankyrin repeat and death domain containing 1B	protein-coding
216569	chr8	21917021	21917280	+	0	NA	Intergenic	L2a|LINE|L2	-2512	NM_001100161	23039		NM_015024	ENSG00000130227	XPO7	EXP7|RANBP16	exportin 7	protein-coding
15799	chr1	151281701	151283880	+	0	NA	promoter-TSS (NR_135595)	promoter-TSS (NR_135595)	491	NM_001304763	57592		NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
150084	chr21	37410301	37410500	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	-8505	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
11791	chr1	92535671	92535830	+	0	NA	intron (NM_001377213, intron 20 of 20)	L1PA7|LINE|L1	-48825	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
69197	chr14	92669871	92670850	+	0	NA	intron (NM_024832, intron 7 of 9)	intron (NM_024832, intron 7 of 9)	78267	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
126907	chr2	32473671	32473830	+	0	NA	intron (NM_016252, intron 33 of 73)	(GT)n|Simple_repeat|Simple_repeat	-58403	NR_030285	693143		NR_030285	ENSG00000207653	MIR558	MIRN558|hsa-mir-558	microRNA 558	ncRNA
62345	chr13	99177971	99178130	+	0	NA	Intergenic	L1MB3|LINE|L1	22705	NR_036532	100289373		NR_036531	ENSG00000228889	UBAC2-AS1	-	UBAC2 antisense RNA 1	ncRNA
185822	chr5	132451601	132452430	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	38758	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
9828	chr1	54049371	54049730	+	0	NA	intron (NM_001305049, intron 1 of 7)	intron (NM_001305049, intron 1 of 7)	3654	NM_001305043	9528		NM_004872	ENSG00000116209	TMEM59	C1orf8|DCF1|HSPC001|PRO195|UNQ169	transmembrane protein 59	protein-coding
167249	chr3	128496871	128497030	+	0	NA	intron (NR_125398, intron 2 of 2)	CpG	-3749	NM_032638	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
614	chr1	1316901	1317300	+	0	NA	intron (NM_001256463, intron 2 of 14)	intron (NM_001256463, intron 2 of 14)	-4534	NR_106785	102465435		NR_106785	ENSG00000283712	MIR6727	hsa-mir-6727	microRNA 6727	ncRNA
231191	chr9	129925371	129925930	+	0	NA	intron (NM_001363755, intron 8 of 15)	AluSx|SINE|Alu	56045	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
177723	chr4	122223451	122223750	+	0	NA	intron (NM_001384125, intron 22 of 87)	L2|LINE|L2	52997	NM_015312	84162		NM_015312	ENSG00000138688	BLTP1	ALKKUCS|FSA|KIAA1109|Tweek	bridge-like lipid transfer protein family member 1	protein-coding
116186	chr19	17453351	17454030	+	0	NA	Intergenic	Intergenic	-5022	NM_001190844	100130519		NM_001190844	ENSG00000188051	TMEM221	Jiraiya	transmembrane protein 221	protein-coding
109204	chr19	456621	457330	+	0	NA	intron (NM_012435, intron 1 of 12)	L2b|LINE|L2	4021	NM_012435	25759		NM_012435	ENSG00000129946	SHC2	SCK|SHCB|SLI	SHC adaptor protein 2	protein-coding
54553	chr12	92158771	92159730	+	0	NA	intron (NR_135037, intron 3 of 3)	intron (NR_135037, intron 3 of 3)	13165	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
216680	chr8	22155401	22155700	+	0	NA	intron (NM_139278, intron 1 of 7)	intron (NM_139278, intron 1 of 7)	1256	NM_139278	203190		NM_139278	ENSG00000168481	LGI3	IDDMDS|LGIL4	leucine rich repeat LGI family member 3	protein-coding
159400	chr3	13452601	13453450	+	0	NA	Intergenic	L1ME2|LINE|L1	27028	NR_046690	100874101		NR_046690	ENSG00000244502	HDAC11-AS1	-	HDAC11 antisense RNA 1	ncRNA
27541	chr10	32326821	32327930	+	0	NA	intron (NR_168508, intron 1 of 12)	L1MA6|LINE|L1	19783	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
174343	chr4	38690451	38690750	+	0	NA	intron (NM_016531, intron 4 of 5)	intron (NM_016531, intron 4 of 5)	-25972	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
88508	chr16	85307521	85307780	+	0	NA	Intergenic	MER77|LTR|ERVL	-1325	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
213123	chr7	131331401	131331950	+	0	NA	intron (NM_001321316, intron 1 of 17)	intron (NM_001321316, intron 1 of 17)	3799	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
78933	chr15	101250901	101252800	+	0	NA	5' UTR (NM_014918, exon 1 of 3)	5' UTR (NM_014918, exon 1 of 3)	198	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
13225	chr1	112667351	112667850	+	0	NA	intron (NM_006135, intron 8 of 9)	AluJb|SINE|Alu	-6712	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
180736	chr5	31861271	31861630	+	0	NA	intron (NM_178140, intron 2 of 24)	intron (NM_178140, intron 2 of 24)	74709	NR_036241	100422874		NR_036241	ENSG00000266243	MIR4279	-	microRNA 4279	ncRNA
20336	chr1	197773201	197773600	+	0	NA	intron (NR_125340, intron 1 of 19)	intron (NR_125340, intron 1 of 19)	2080	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
39847	chr11	62372171	62372330	+	0	NA	intron (NM_001083926, intron 4 of 6)	intron (NM_001083926, intron 4 of 6)	34802	NM_001083926	80150		NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase and isoaspartyl peptidase 1	protein-coding
204138	chr7	2356371	2357030	+	0	NA	intron (NM_001362791, intron 1 of 18)	AluSz6|SINE|Alu	1873	NM_001362791	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
106111	chr18	9173501	9174700	+	0	NA	intron (NM_001204056, intron 1 of 11)	L1PREC2|LINE|L1	36537	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
28722	chr10	61901101	61902000	+	0	NA	promoter-TSS (NM_032199)	promoter-TSS (NM_032199)	-149	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
21865	chr1	207620021	207620550	+	0	NA	intron (NM_000651, intron 43 of 46)	intron (NM_000651, intron 43 of 46)	-24848	NM_175710	1379		NM_175710	ENSG00000197721	CR1L	-	complement C3b/C4b receptor 1 like	protein-coding
69399	chr14	94047051	94047230	+	0	NA	3' UTR (NM_023112, exon 6 of 6)	3' UTR (NM_023112, exon 6 of 6)	20800	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
233171	chr9	137184601	137184800	+	0	NA	intron (NM_013366, intron 4 of 12)	intron (NM_013366, intron 4 of 12)	3860	NM_013366	29882		NM_013366	ENSG00000176248	ANAPC2	APC2	anaphase promoting complex subunit 2	protein-coding
174227	chr4	37816901	37817100	+	0	NA	Intergenic	Intergenic	-9686	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
82999	chr16	22187851	22188980	+	0	NA	intron (NM_001365288, intron 11 of 11)	MIRb|SINE|MIR	-17863	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
145772	chr20	45361771	45361930	+	0	NA	promoter-TSS (NM_001197129)	promoter-TSS (NM_001197129)	-99	NM_001197129	90196		NM_033542	ENSG00000204070	SYS1	C20orf169|dJ453C12.4|dJ453C12.4.1	SYS1 golgi trafficking protein	protein-coding
6837	chr1	31028121	31028380	+	0	NA	intron (NM_014676, intron 3 of 21)	intron (NM_014676, intron 3 of 21)	37467	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
182866	chr5	69786471	69786700	+	0	NA	Intergenic	MER76|LTR|ERVL	-44447	NR_134269	102724392		NR_134268		LINC02197	-	long intergenic non-protein coding RNA 2197	ncRNA
71730	chr15	20361271	20361430	+	0	NA	Intergenic	L1MD2|LINE|L1	78606	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
218808	chr8	59067671	59067830	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	51397	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
172523	chr4	2288251	2288750	+	0	NA	intron (NM_020972, intron 8 of 12)	intron (NM_020972, intron 8 of 12)	-26391	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
21890	chr1	207805971	207806130	+	0	NA	non-coding (NR_135298, exon 4 of 5)	non-coding (NR_135298, exon 4 of 5)	-3527	NR_029518	407025		NR_029518	ENSG00000284203	MIR29B2	MIRN29B2	microRNA 29b-2	ncRNA
212414	chr7	128168421	128169230	+	0	NA	Intergenic	Intergenic	-39047	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
215883	chr8	7862851	7863730	+	0	NA	intron (NM_001081552, intron 3 of 3).3	intron (NM_001081552, intron 3 of 3).3	15282	NM_001081552	653423		NM_001081552	ENSG00000178287	SPAG11A	EDDM2A|HE2	sperm associated antigen 11A	protein-coding
202290	chr6	157183871	157184580	+	0	NA	intron (NM_001371656, intron 13 of 20)	intron (NM_001371656, intron 13 of 20)	139294	NM_018452	729515		NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
90332	chr17	1175801	1176000	+	0	NA	intron (NM_001322841, intron 1 of 22)	AluYk3|SINE|Alu	4081	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
87321	chr16	70252871	70253330	+	0	NA	intron (NM_001605, intron 20 of 20)	intron (NM_001605, intron 20 of 20)	-1160	NM_058219	118460		NM_058219	ENSG00000223496	EXOSC6	EAP4|MTR3|Mtr3p|hMtr3p|p11	exosome component 6	protein-coding
211461	chr7	105092901	105093630	+	0	NA	intron (NM_182931, intron 15 of 26)	intron (NM_182931, intron 15 of 26)	79060	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
30231	chr10	74977871	74978450	+	0	NA	intron (NM_012330, intron 9 of 17).2	intron (NM_012330, intron 9 of 17).2	-43573	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
165048	chr3	71439751	71439850	+	0	NA	intron (NM_001012505, intron 3 of 6)	AluSz6|SINE|Alu	102289	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
181534	chr5	43068651	43069330	+	0	NA	intron (NR_102752, intron 2 of 2)	THE1D|LTR|ERVL-MaLR	-1551	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
225421	chr9	35064621	35064880	+	0	NA	intron (NM_001354927, intron 5 of 16)	intron (NM_001354927, intron 5 of 16)	7558	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
26749	chr10	22701221	22701880	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	12558	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
50266	chr12	46268401	46269600	+	0	NA	promoter-TSS (NM_001077484)	promoter-TSS (NM_001077484)	43	NM_030674	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
73643	chr15	44680001	44680480	+	0	NA	Intergenic	LTR33|LTR|ERVL	-3352	NM_001145112	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
209834	chr7	89259201	89259400	+	0	NA	intron (NM_181646, intron 2 of 3)	Tigger2|DNA|TcMar-Tigger	-463563	NM_152706	219557		NM_152706	ENSG00000164645	TEX47	C7orf62|DYBLUF	testis expressed 47	protein-coding
95703	chr17	38491701	38492580	+	0	NA	intron (NM_001199417, intron 20 of 23).2	intron (NM_001199417, intron 20 of 23).2	63676	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
169156	chr3	156553771	156553930	+	0	NA	intron (NM_007107, intron 1 of 4)	intron (NM_007107, intron 1 of 4)	275	NM_001308205	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
98726	chr17	48017301	48017850	+	0	NA	Intergenic	Intergenic	-15307	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
48665	chr12	10497501	10498380	+	0	NA	Intergenic	Intergenic	-7953	NM_001357731	255308		NM_001357731	ENSG00000180574	EIF2S3B	EIF2S3L|eIF-2gA|eIF2gA	eukaryotic translation initiation factor 2 subunit gamma B	protein-coding
94180	chr17	28546101	28546300	+	0	NA	TTS (NM_001330166)	TTS (NM_001330166)	6424	NM_001330166	9094		NM_005148	ENSG00000109103	UNC119	CORD24|HRG4|IMD13|POC7|POC7A	unc-119 lipid binding chaperone	protein-coding
220541	chr8	100698471	100699750	+	0	NA	Intergenic	AluJr|SINE|Alu	3914	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
60807	chr13	45335821	45336850	+	0	NA	TTS (NR_145985)	TTS (NR_145985)	112	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
177170	chr4	108151101	108151630	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	15432	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
84651	chr16	30725621	30725900	+	0	NA	intron (NM_006662, intron 25 of 33)	L1MB8|LINE|L1	-14882	NM_001256829	100862671		NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
80385	chr16	2542421	2542750	+	0	NA	intron (NM_031268, intron 1 of 10)	intron (NM_031268, intron 1 of 10)	4564	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
171558	chr3	196893821	196894080	+	0	NA	intron (NM_001308045, intron 2 of 8)	intron (NM_001308045, intron 2 of 8)	26030	NM_152699	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
191321	chr6	6916401	6916600	+	0	NA	Intergenic	Intergenic	-191243	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
234407	chrX	16783721	16783980	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2582	NM_001168683	55787		NM_018360	ENSG00000086712	TXLNG	CXorf15|ELRG|FIAT|LSR5|TXLNGX	taxilin gamma	protein-coding
104409	chr17	81055021	81055280	+	0	NA	intron (NM_001385148, intron 2 of 13)	intron (NM_001385148, intron 2 of 13)	-2584	NM_001385147	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
138822	chr2	216351571	216351730	+	0	NA	intron (NM_020814, intron 1 of 3)	L2a|LINE|L2	20833	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
155595	chr22	38767671	38768030	+	0	NA	Intergenic	Intergenic	-11852	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
3311	chr1	15403171	15403530	+	0	NA	Intergenic	MER21A|LTR|ERVL	-6538	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
115515	chr19	15426871	15427230	+	0	NA	exon (NM_001330395, exon 4 of 8)	exon (NM_001330395, exon 4 of 8)	5711	NM_001330395	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
19006	chr1	169586271	169587030	+	0	NA	promoter-TSS (NM_000130)	promoter-TSS (NM_000130)	-169	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
79524	chr16	809471	809630	+	0	NA	intron (NM_001013638, intron 2 of 2)	intron (NM_001013638, intron 2 of 2)	4107	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
44134	chr11	96122471	96122630	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-198443	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
55441	chr12	104567321	104567580	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-24183	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
51449	chr12	52044951	52045280	+	0	NA	intron (NM_001202233, intron 2 of 7)	intron (NM_001202233, intron 2 of 7)	-6287	NM_002135	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
48690	chr12	10594901	10595300	+	0	NA	intron (NR_028045, intron 4 of 6)	intron (NR_028045, intron 4 of 6)	4735	NR_028045	10748		NM_006611		KLRA1P	KLRA1|KLRAP1|LY49L|Ly-49L|Ly49	killer cell lectin like receptor A1, pseudogene	pseudo
211790	chr7	107661351	107662130	+	0	NA	promoter-TSS (NR_028137)	promoter-TSS (NR_028137)	58	NR_028137	286002		NR_028137		SLC26A4-AS1	-	SLC26A4 antisense RNA 1	ncRNA
229356	chr9	120930351	120930680	+	0	NA	Intergenic	Intergenic	-1342	NM_001190945	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
180113	chr5	1275771	1276130	+	0	NA	intron (NM_001193376, intron 6 of 14)	intron (NM_001193376, intron 6 of 14)	19118	NM_198253	7015		NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
75327	chr15	65318651	65319300	+	0	NA	Intergenic	Intergenic	14298	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
20907	chr1	202169701	202170050	+	0	NA	non-coding (NR_002930, exon 4 of 22)	non-coding (NR_002930, exon 4 of 22)	1824	NR_002930	148713		NR_002930	ENSG00000293457	PTPRVP	ESP|OST-PTP|PTPRV	protein tyrosine phosphatase receptor type V, pseudogene	pseudo
109810	chr19	1160551	1160650	+	0	NA	intron (NM_014963, intron 1 of 31)	AluSx1|SINE|Alu	13668	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
31250	chr10	91944801	91945400	+	0	NA	intron (NR_165098, intron 4 of 38)	Tigger3a|DNA|TcMar-Tigger	21330	NR_165094	9044		NM_003972	ENSG00000095564	BTAF1	MOT1|TAF(II)170|TAF172|TAFII170	B-TFIID TATA-box binding protein associated factor 1	protein-coding
47788	chr12	6567401	6568790	+	0	NA	intron (NM_001258309, intron 1 of 16)	CpG	196	NM_001258309	4839		NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding
143753	chr20	32371721	32371980	+	0	NA	intron (NM_015338, intron 3 of 11)	AluJr|SINE|Alu	12785	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
192774	chr6	26523021	26523550	+	0	NA	non-coding (NR_026790, exon 1 of 1)	non-coding (NR_026790, exon 1 of 1)	1579	NR_026790	493812		NR_026790	ENSG00000228223	HCG11	CTA-14H9.3|bK14H9.3	HLA complex group 11	ncRNA
86934	chr16	68099771	68099930	+	0	NA	intron (NM_173165, intron 1 of 9)	FRAM|SINE|Alu	14480	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
167276	chr3	128623371	128623530	+	0	NA	intron (NM_002950, intron 8 of 9)	AluJb|SINE|Alu	27368	NM_002950	6184		NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding
144233	chr20	34403421	34404080	+	0	NA	intron (NM_001257138, intron 3 of 23)	L2c|LINE|L2	40477	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
141185	chr2	239295321	239296300	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-9652	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
136488	chr2	177225501	177226050	+	0	NA	Intergenic	AluY|SINE|Alu	12981	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
13672	chr1	116567401	116568000	+	0	NA	intron (NR_026665, intron 1 of 5)	L1MC4|LINE|L1	3326	NR_026665	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
32527	chr10	102927621	102927880	+	0	NA	TTS (NM_199077)	TTS (NM_199077)	-9415	NR_160733	107984265		NR_160733	ENSG00000286575	LOC107984265	-	uncharacterized LOC107984265	ncRNA
185795	chr5	132420851	132421300	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	10146	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
28214	chr10	45000471	45001900	+	0	NA	promoter-TSS (NR_126421)	promoter-TSS (NR_126421)	262	NM_006963	7570		NM_006963	ENSG00000165512	ZNF22	HKR-T1|KOX15|ZNF422|Zfp422	zinc finger protein 22	protein-coding
219036	chr8	65661951	65662380	+	0	NA	intron (NM_014637, intron 1 of 7)	SVA_D|Retroposon|SVA	-7708	NM_001145838	9650		NM_014637	ENSG00000066855	MTFR1	CHPPR|FAM54A2	mitochondrial fission regulator 1	protein-coding
151734	chr22	17772701	17773100	+	0	NA	intron (NM_001244567, intron 1 of 5)	intron (NM_001244567, intron 1 of 5)	1142	NM_197966	637		NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
179250	chr4	174520751	174521150	+	0	NA	intron (NM_001363574, intron 2 of 4)	intron (NM_001363574, intron 2 of 4)	1538	NM_001363574	3248		NM_000860	ENSG00000164120	HPGD	15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1	15-hydroxyprostaglandin dehydrogenase	protein-coding
105305	chr17	82525321	82525650	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	5753	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
203675	chr7	1014951	1015050	+	0	NA	intron (NR_146964, intron 1 of 4)	intron (NR_146964, intron 1 of 4)	8026	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
136615	chr2	178871501	178871780	+	0	NA	intron (NM_173648, intron 13 of 23)	intron (NM_173648, intron 13 of 23)	-64217	NM_001256850	7273		NM_003319	ENSG00000155657	TTN	CMD1G|CMH9|CMPD4|CMYP5|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD	titin	protein-coding
148115	chr20	63440651	63440750	+	0	NA	intron (NM_001382235, intron 5 of 16)	intron (NM_001382235, intron 5 of 16)	31955	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
142537	chr20	5079701	5079900	+	0	NA	intron (NM_001330987, intron 3 of 3)	AluJb|SINE|Alu	33276	NM_001009923	29058		NM_014145	ENSG00000089063	TMEM230	C20orf30|HSPC274|dJ1116H23.2.1	transmembrane protein 230	protein-coding
168571	chr3	148991181	148992830	+	0	NA	intron (NM_001184720, intron 1 of 6)	CpG	465	NM_004130	2992		NM_004130	ENSG00000163754	GYG1	GSD15|GYG	glycogenin 1	protein-coding
24007	chr1	235253151	235254050	+	0	NA	intron (NM_016374, intron 5 of 23)	L1MA9|LINE|L1	-63484	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
206785	chr7	36736471	36737100	+	0	NA	Intergenic	Intergenic	-12236	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
189388	chr5	172721451	172721550	+	0	NA	Intergenic	Intergenic	-34003	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
107920	chr18	57619851	57620400	+	0	NA	intron (NM_004539, intron 2 of 13)	intron (NM_004539, intron 2 of 13)	1711	NM_004539	4677		NM_004539	ENSG00000134440	NARS1	ASNRS|NARS|NEDMILEG|NEDMILG	asparaginyl-tRNA synthetase 1	protein-coding
6535	chr1	28577071	28577630	+	0	NA	intron (NM_017846, intron 8 of 8)	MIRb|SINE|MIR	1472	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	small nucleolar RNA, C/D box 99	snoRNA
159622	chr3	15275051	15275750	+	0	NA	intron (NM_004844, intron 3 of 8)	intron (NM_004844, intron 3 of 8)	21216	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
140810	chr2	236389101	236389380	+	0	NA	intron (NM_001270585, intron 11 of 18)	L1PA2|LINE|L1	114457	NM_001270585	79781		NM_024726	ENSG00000132321	IQCA1	4930465P12Rik|DRC11|IQCA	IQ motif containing with AAA domain 1	protein-coding
143654	chr20	31872471	31873300	+	0	NA	intron (NR_148013, intron 2 of 16)	L2a|LINE|L2	-2141	NM_080611	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
192673	chr6	26231301	26231530	+	0	NA	Intergenic	MER39B|LTR|ERV1	3572	NM_005320	3007		NM_005320	ENSG00000124575	H1-3	H1.3|H1D|H1F3|H1s-2|HIST1H1D	H1.3 linker histone, cluster member	protein-coding
135016	chr2	154453021	154453280	+	0	NA	3' UTR (NM_001376392, exon 13 of 13)	3' UTR (NM_001376392, exon 13 of 13)	4288	NR_161181	100144595		NR_161181	ENSG00000224675	GALNT13-AS1	-	GALNT13 antisense RNA 1	ncRNA
9578	chr1	51907001	51907350	+	0	NA	TTS (NM_002867)	TTS (NM_002867)	-28238	NM_002525	4898		NM_002525	ENSG00000078618	NRDC	NRD1|hNRD1|hNRD2	nardilysin convertase	protein-coding
61990	chr13	80340851	80341750	+	0	NA	promoter-TSS (NM_005842)	promoter-TSS (NM_005842)	-174	NM_005842	10253		NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding
66179	chr14	60654251	60654950	+	0	NA	Intergenic	Intergenic	-5123	NM_005982	6495		NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
1927	chr1	6484501	6484700	+	0	NA	intron (NM_198681, intron 2 of 21)	intron (NM_198681, intron 2 of 21)	869	NM_001265593	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
174049	chr4	26882421	26883100	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	21919	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
72844	chr15	40163301	40163950	+	0	NA	intron (NM_001211, intron 1 of 22)	MER6|DNA|TcMar-Tigger	2556	NM_001211	701		NM_001211	ENSG00000156970	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
112430	chr19	6279101	6280480	+	0	NA	5' UTR (NM_005934, exon 1 of 12)	5' UTR (NM_005934, exon 1 of 12)	185	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
47123	chr12	686871	687030	+	0	NA	Intergenic	Intergenic	-23505	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
150536	chr21	42980251	42980550	+	0	NA	intron (NM_001320694, intron 1 of 10)	intron (NM_001320694, intron 1 of 10)	5838	NM_004571	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
70751	chr14	103399701	103400150	+	0	NA	intron (NM_002376, intron 1 of 15)	intron (NM_002376, intron 1 of 15)	14510	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
18299	chr1	161155701	161155930	+	0	NA	intron (NM_016406, intron 1 of 5)	L2c|LINE|L2	1837	NM_016406	51506		NM_016406	ENSG00000143222	UFC1	HSPC155|NEDSG	ubiquitin-fold modifier conjugating enzyme 1	protein-coding
182898	chr5	70218171	70218330	+	0	NA	TTS (NR_027386).2	TTS (NR_027386).2	7545	NR_024054	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
96287	chr17	39927101	39928600	+	0	NA	promoter-TSS (NM_001320802)	promoter-TSS (NM_001320802)	-249	NM_001320802	94103		NM_016471	ENSG00000172057	ORMDL3	-	ORMDL sphingolipid biosynthesis regulator 3	protein-coding
110891	chr19	2700721	2701780	+	0	NA	intron (NM_052847, intron 1 of 4)	intron (NM_052847, intron 1 of 4)	1444	NM_052847	2788		NM_052847	ENSG00000176533	GNG7	HG3B	G protein subunit gamma 7	protein-coding
224576	chr9	20015451	20015750	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-226563	NM_001193288	25769		NM_020344	ENSG00000155886	SLC24A2	NCKX2	solute carrier family 24 member 2	protein-coding
150811	chr21	43956401	43956830	+	0	NA	intron (NM_001037553, intron 1 of 8)	MLT1F1|LTR|ERVL-MaLR	31217	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
143904	chr20	32584701	32585900	+	0	NA	promoter-TSS (NM_001256798)	promoter-TSS (NM_001256798)	33	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
61965	chr13	79404321	79404650	+	0	NA	intron (NM_022118, intron 1 of 20)	L2a|LINE|L2	1736	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
174192	chr4	36351071	36351430	+	0	NA	Intergenic	Intergenic	69634	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
68793	chr14	91228161	91229300	+	0	NA	Intergenic	Intergenic	15974	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
126878	chr2	32068071	32068430	+	0	NA	intron (NM_001363875, intron 1 of 15)	AluY|SINE|Alu	4694	NM_001377959	6683		NM_014946	ENSG00000021574	SPAST	ADPSP|FSP2|SPG4	spastin	protein-coding
12697	chr1	109487101	109487300	+	0	NA	exon (NM_153340, exon 4 of 11)	exon (NM_153340, exon 4 of 11)	3241	NM_001350177	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
151633	chr22	16559171	16559550	+	0	NA	Intergenic	(CAAGCCAGC)n|Simple_repeat|Simple_repeat	33450	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
193829	chr6	31491471	31492750	+	0	NA	intron (NR_149132, intron 1 of 1)	intron (NR_149132, intron 1 of 1)	2684	NR_149132	102725068		NR_149132	ENSG00000286940	MICB-DT	TCONS_00012692	MICB divergent transcript	ncRNA
2558	chr1	9760501	9760900	+	0	NA	intron (NM_001302883, intron 2 of 17)	AluJb|SINE|Alu	63265	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
215259	chr7	156970051	156970430	+	0	NA	3' UTR (NM_001353366, exon 11 of 11)	3' UTR (NM_001353366, exon 11 of 11)	20528	NM_001353366	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
49444	chr12	24846551	24846750	+	0	NA	intron (NM_001178091, intron 5 of 9)	MIRb|SINE|MIR	55572	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
17674	chr1	157702201	157702830	+	0	NA	Intergenic	Intergenic	-1746	NM_052939	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
87629	chr16	74430001	74430400	+	0	NA	Intergenic	Intergenic	-8059	NM_001385192	497190		NM_001011880	ENSG00000140839	CLEC18B	MRCL2	C-type lectin domain family 18 member B	protein-coding
17715	chr1	158831001	158831350	+	0	NA	promoter-TSS (NM_002432)	promoter-TSS (NM_002432)	-176	NM_002432	4332		NM_002432	ENSG00000163563	MNDA	PYHIN3	myeloid cell nuclear differentiation antigen	protein-coding
110346	chr19	1881251	1881700	+	0	NA	exon (NM_031213, exon 2 of 6)	exon (NM_031213, exon 2 of 6)	4021	NM_001130111	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
234922	chrX	37746371	37746730	+	0	NA	Intergenic	Intergenic	-33509	NM_000397	1536		NM_000397	ENSG00000165168	CYBB	AMCBX2|CGD|CGDX|GP91-1|GP91-PHOX|GP91PHOX|IMD34|NOX2|p91-PHOX	cytochrome b-245 beta chain	protein-coding
83607	chr16	28192721	28194450	+	0	NA	intron (NM_015171, intron 1 of 23)	intron (NM_015171, intron 1 of 23)	18380	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
71974	chr15	25437771	25439730	+	0	NA	promoter-TSS (NM_001354526)	promoter-TSS (NM_001354526)	274	NM_001354513	7337		NM_000462	ENSG00000114062	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A|PIX1	ubiquitin protein ligase E3A	protein-coding
144421	chr20	35368551	35368850	+	0	NA	intron (NM_199487, intron 5 of 8)	MIRb|SINE|MIR	43273	NM_018244	55245		NM_018244	ENSG00000101019	UQCC1	BFZB|C20orf44|CBP3|UQCC	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding
84359	chr16	30220971	30221130	+	0	NA	Intergenic	L2b|LINE|L2	-14123	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
203941	chr7	1544051	1544750	+	0	NA	3' UTR (NM_001097620, exon 9 of 9)	3' UTR (NM_001097620, exon 9 of 9)	-9520	NR_149036	100128653		NR_149036		LOC100128653	-	uncharacterized LOC100128653	ncRNA
154420	chr22	35337871	35338750	+	0	NA	intron (NR_156428, intron 10 of 13)	intron (NR_156428, intron 10 of 13)	-1511	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
147312	chr20	57706801	57707600	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	2815	NM_020182	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
26967	chr10	26686771	26686930	+	0	NA	Intergenic	AluYm1|SINE|Alu	-10574	NM_001321979	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
4895	chr1	23799471	23800010	+	0	NA	promoter-TSS (NM_001127621)	promoter-TSS (NM_001127621)	-193	NM_001127621	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
104224	chr17	80663571	80664280	+	0	NA	intron (NM_020761, intron 3 of 33)	intron (NM_020761, intron 3 of 33)	119087	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
47316	chr12	1715571	1715980	+	0	NA	intron (NM_001375365, intron 1 of 7).2	LTR12F|LTR|ERV1	24705	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
44840	chr11	114079121	114079380	+	0	NA	intron (NM_001354751, intron 2 of 6)	MIRb|SINE|MIR	16039	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
183205	chr5	76114421	76114700	+	0	NA	intron (NM_014979, intron 1 of 12)	intron (NM_014979, intron 1 of 12)	31177	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
195189	chr6	36050071	36050630	+	0	NA	intron (NM_139014, intron 1 of 10)	L2c|LINE|L2	22542	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
129165	chr2	68063921	68064380	+	0	NA	Intergenic	L1PA5|LINE|L1	-1146	NM_001190265	10438		NM_006333	ENSG00000197223	C1D	LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
204027	chr7	1925371	1926330	+	0	NA	intron (NM_001304524, intron 15 of 16)	L1MDa|LINE|L1	14721	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
134029	chr2	131079021	131079700	+	0	NA	intron (NM_001321743, intron 4 of 8)	AluSx|SINE|Alu	13802	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
6356	chr1	27790371	27790530	+	0	NA	intron (NM_177424, intron 2 of 8)	LTR12B|LTR|ERV1	17231	NM_177424	23673		NM_177424	ENSG00000117758	STX12	STX13|STX14	syntaxin 12	protein-coding
114908	chr19	13934151	13934550	+	0	NA	exon (NM_001146254, exon 6 of 8)	exon (NM_001146254, exon 6 of 8)	4067	NM_001370095	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
152862	chr22	22321901	22322550	+	0	NA	intron (NR_027293, intron 10 of 10)	intron (NR_027293, intron 10 of 10)	24127	NR_027293	96610		NM_080926		BMS1P20	IGL|IGLV|IGLV1	BMS1 pseudogene 20	pseudo
11480	chr1	90717371	90718050	+	0	NA	promoter-TSS (NM_020063)	promoter-TSS (NM_020063)	-408	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
69691	chr14	98169101	98169830	+	0	NA	Intergenic	Intergenic	-191341	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
103191	chr17	77457001	77457750	+	0	NA	intron (NM_001293698, intron 1 of 9)	intron (NM_001293698, intron 1 of 9)	3348	NM_001293698	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
5607	chr1	26103771	26104150	+	0	NA	Intergenic	Intergenic	-7205	NM_001243532	149420		NM_152835	ENSG00000175087	PDIK1L	CLIK1L|STK35L2	PDLIM1 interacting kinase 1 like	protein-coding
68438	chr14	81473971	81475200	+	0	NA	3' UTR (NM_005065, exon 21 of 21)	3' UTR (NM_005065, exon 21 of 21)	-24428	NR_109999	100506700		NR_109999		LINC02308	-	long intergenic non-protein coding RNA 2308	ncRNA
105960	chr18	5057751	5058150	+	0	NA	Intergenic	Intergenic	-23232	NR_146900	105371969		NR_146900	ENSG00000265514	LINC01892	-	long intergenic non-protein coding RNA 1892	ncRNA
218670	chr8	58022201	58022400	+	0	NA	intron (NM_147189, intron 1 of 4)	L1MB3|LINE|L1	27777	NM_147189	90362		NM_147189	ENSG00000169122	FAM110B	C8orf72	family with sequence similarity 110 member B	protein-coding
79216	chr16	361301	361500	+	0	NA	Intergenic	CpG	-8677	NM_181050	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
172090	chr4	1049301	1049750	+	0	NA	Intergenic	Intergenic	37061	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
89031	chr16	88383751	88384300	+	0	NA	intron (NM_001367624, intron 1 of 2)	CpG	1066	NM_001367624	84627		NM_001127464	ENSG00000225614	ZNF469	BCS|BCS1|Zfp469	zinc finger protein 469	protein-coding
150732	chr21	43750821	43751080	+	0	NA	intron (NM_001331030, intron 6 of 9)	(TG)n|Simple_repeat|Simple_repeat	9464	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
118176	chr19	35040401	35041750	+	0	NA	promoter-TSS (NM_001375441)	promoter-TSS (NM_001375441)	569	NM_002151	3249		NM_002151	ENSG00000105707	HPN	TMPRSS1	hepsin	protein-coding
114658	chr19	13054501	13055000	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	29971	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
10813	chr1	77847721	77847980	+	0	NA	intron (NM_001363586, intron 8 of 15)	intron (NM_001363586, intron 8 of 15)	-40665	NM_001172309	91624		NM_144573	ENSG00000162614	NEXN	CMH20|NELIN	nexilin F-actin binding protein	protein-coding
224772	chr9	22004821	22005530	+	0	NA	3' UTR (NM_004936, exon 2 of 2)	3' UTR (NM_004936, exon 2 of 2)	4130	NM_004936	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
132270	chr2	104844571	104844730	+	0	NA	intron (NR_037883, intron 1 of 3)	CpG	6826	NR_131234	100506421		NR_037883	ENSG00000233639	PANTR1	LINC01158|linc-Brn1a|linc-POU3F3	POU3F3 adjacent non-coding transcript 1	ncRNA
5748	chr1	26475821	26476430	+	0	NA	3' UTR (NM_005517, exon 6 of 6)	3' UTR (NM_005517, exon 6 of 6)	3685	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
166306	chr3	112654921	112655280	+	0	NA	Intergenic	L2c|LINE|L2	-13957	NM_199511	151887		NM_178274	ENSG00000091986	CCDC80	CL2|DRO1|LINC01279|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
39426	chr11	60887571	60888200	+	0	NA	Intergenic	Intergenic	18700	NM_014502	27339		NM_014502	ENSG00000110107	PRPF19	NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4	pre-mRNA processing factor 19	protein-coding
99119	chr17	49218801	49220250	+	0	NA	intron (NM_001135186, intron 3 of 7)	intron (NM_001135186, intron 3 of 7)	8818	NM_016428	51225		NM_016428	ENSG00000108798	ABI3	NESH|SSH3BP3	ABI family member 3	protein-coding
114371	chr19	12484001	12485730	+	0	NA	promoter-TSS (NM_152601)	promoter-TSS (NM_152601)	-49	NM_152601	163051		NM_152601	ENSG00000242852	ZNF709	-	zinc finger protein 709	protein-coding
96549	chr17	40375871	40376030	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11213	NM_152219	125111		NM_152219	ENSG00000183153	GJD3	CX31.9|Cx30.2|GJA11|GJC1	gap junction protein delta 3	protein-coding
134247	chr2	135051701	135054130	+	0	NA	intron (NM_001172435, intron 2 of 24)	intron (NM_001172435, intron 2 of 24)	623	NM_012233	22930		NM_012233	ENSG00000115839	RAB3GAP1	MARTS2|P130|RAB3GAP|RAB3GAP130|WARBM1	RAB3 GTPase activating protein catalytic subunit 1	protein-coding
185478	chr5	131293401	131294300	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	29797	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
204249	chr7	2560871	2561250	+	0	NA	intron (NM_001287501, intron 1 of 19)	AluSx1|SINE|Alu	2081	NM_001287500	23288		NM_152558	ENSG00000106012	IQCE	1700028P05Rik|PAPA7	IQ motif containing E	protein-coding
25503	chr10	7159621	7160100	+	0	NA	3' UTR (NM_001018039, exon 21 of 21)	3' UTR (NM_001018039, exon 21 of 21)	26924	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
28526	chr10	50416821	50417080	+	0	NA	intron (NM_147156, intron 6 of 10)	intron (NM_147156, intron 6 of 10)	-165434	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
102456	chr17	75707771	75707930	+	0	NA	non-coding (NR_126037, exon 9 of 9)	non-coding (NR_126037, exon 9 of 9)	-13609	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
126950	chr2	33598591	33600180	+	0	NA	promoter-TSS (NM_001304538)	promoter-TSS (NM_001304538)	-23	NM_001304538	25940		NM_015475	ENSG00000119812	FAM98A	-	family with sequence similarity 98 member A	protein-coding
180532	chr5	14590421	14590900	+	0	NA	intron (NM_019018, intron 1 of 7)	intron (NM_019018, intron 1 of 7)	8868	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
37208	chr11	14342851	14343350	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	15385	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
67137	chr14	68683651	68683750	+	0	NA	TTS (NM_001321818)	TTS (NM_001321818)	-54913	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
157909	chr22	49769101	49770100	+	0	NA	Intergenic	Intergenic	54731	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
6165	chr1	27410471	27410630	+	0	NA	intron (NM_006990, intron 7 of 8)	intron (NM_006990, intron 7 of 8)	17928	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
159457	chr3	14123551	14125500	+	0	NA	promoter-TSS (NM_024334)	promoter-TSS (NM_024334)	345	NM_144636	131474		NM_144636	ENSG00000163528	CHCHD4	MIA40|TIMM40	coiled-coil-helix-coiled-coil-helix domain containing 4	protein-coding
54082	chr12	76050251	76050550	+	0	NA	intron (NM_139207, intron 12 of 15)	intron (NM_139207, intron 12 of 15)	-18624	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
97978	chr17	45258871	45259230	+	0	NA	intron (NM_152343, intron 1 of 4)	L1M4|LINE|L1	-3030	NR_024435	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
134323	chr2	136065401	136065800	+	0	NA	Intergenic	Intergenic	50635	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
50791	chr12	49050721	49051030	+	0	NA	intron (NM_003482, intron 11 of 54)	intron (NM_003482, intron 11 of 54)	9919	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
226106	chr9	62852271	62852630	+	0	NA	Intergenic	Intergenic	11805	NR_135010	442421		NR_024496		PTGER4P2-CDK2AP2P2	-	PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene	pseudo
46612	chr11	128603071	128603430	+	0	NA	Intergenic	Intergenic	-15692	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
145576	chr20	44491751	44492280	+	0	NA	3' UTR (NM_024331, exon 6 of 6)	3' UTR (NM_024331, exon 6 of 6)	16141	NM_001261839	79183		NM_024331	ENSG00000124120	TTPAL	C20orf121	alpha tocopherol transfer protein like	protein-coding
200823	chr6	137968821	137969580	+	0	NA	Intergenic	L2|LINE|L2	-23400	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
189626	chr5	176032051	176032300	+	0	NA	Intergenic	AluSx|SINE|Alu	29880	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
126600	chr2	28778471	28778830	+	0	NA	intron (NM_206876, intron 3 of 8)	MLT1F2|LTR|ERVL-MaLR	26820	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
235856	chrX	50386571	50386930	+	0	NA	intron (NM_001013742, intron 14 of 27)	intron (NM_001013742, intron 14 of 27)	84075	NM_001013742	139189		NM_001013742	ENSG00000274588	DGKK	-	diacylglycerol kinase kappa	protein-coding
157659	chr22	46219601	46219850	+	0	NA	intron (NM_005036, intron 6 of 8)	intron (NM_005036, intron 6 of 8)	30568	NM_207327	150383		NM_207327	ENSG00000205643	CDPF1	C22orf40|CDKN1A	cysteine rich DPF motif domain containing 1	protein-coding
132543	chr2	106187101	106187700	+	0	NA	intron (NR_165308, intron 1 of 14)	intron (NR_165308, intron 1 of 14)	6901	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
23051	chr1	226618371	226618730	+	0	NA	Intergenic	Intergenic	56518	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
216987	chr8	23101671	23102030	+	0	NA	intron (NR_046173, intron 3 of 3)	intron (NR_046173, intron 3 of 3)	-1071	NM_003841	8794		NM_003841	ENSG00000173535	TNFRSF10C	CD263|DCR1|DCR1-TNFR|LIT|TRAIL-R3|TRAILR3|TRID	TNF receptor superfamily member 10c	protein-coding
72130	chr15	28986101	28986880	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	-9037	NM_001353794	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
86770	chr16	67674851	67674950	+	0	NA	non-coding (NR_027398, exon 2 of 2)	non-coding (NR_027398, exon 2 of 2)	8086	NM_001012984	388284		NM_001012984	ENSG00000159761	C16orf86	-	chromosome 16 open reading frame 86	protein-coding
225233	chr9	34202251	34202550	+	0	NA	intron (NM_001171204, intron 2 of 7)	AluSz|SINE|Alu	23357	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
81015	chr16	4246821	4247080	+	0	NA	non-coding (NR_039999, exon 3 of 3)	non-coding (NR_039999, exon 3 of 3)	-4870	NM_001323667	6345		NM_001098814	ENSG00000185739	SRL	SAR	sarcalumenin	protein-coding
71627	chr14	106719701	106720300	+	0	NA	Intergenic	Intergenic	130999	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
98522	chr17	47567271	47567580	+	0	NA	intron (NM_006310, intron 2 of 22)	intron (NM_006310, intron 2 of 22)	36317	NM_006310	9520		NM_006310	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
161489	chr3	42508101	42508300	+	0	NA	intron (NM_001251883, intron 1 of 9)	intron (NM_001251883, intron 1 of 9)	5557	NM_004624	7433		NM_004624	ENSG00000114812	VIPR1	HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R	vasoactive intestinal peptide receptor 1	protein-coding
66867	chr14	65074551	65075080	+	0	NA	TTS (NM_001320415)	TTS (NM_001320415)	-15103	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
13909	chr1	119948551	119949030	+	0	NA	intron (NM_001200001, intron 16 of 21)	intron (NM_001200001, intron 16 of 21)	-52275	NM_021794	11085		NM_021794	ENSG00000134249	ADAM30	svph4	ADAM metallopeptidase domain 30	protein-coding
4597	chr1	22081721	22082280	+	0	NA	intron (NM_044472, intron 3 of 5)	intron (NM_044472, intron 3 of 5)	29291	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
88346	chr16	84550471	84550630	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-45891	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
50982	chr12	49563821	49564280	+	0	NA	intron (NM_006337, intron 6 of 14)	intron (NM_006337, intron 6 of 14)	2389	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
97741	chr17	44387721	44388730	+	0	NA	intron (NM_000419, intron 1 of 29)	intron (NM_000419, intron 1 of 29)	1424	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
227461	chr9	90914771	90915250	+	0	NA	Intergenic	Intergenic	87590	NM_001174167	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
17927	chr1	160289501	160289700	+	0	NA	3' UTR (NM_004371, exon 33 of 33)	3' UTR (NM_004371, exon 33 of 33)	-4449	NR_036492	5824		NM_002857	ENSG00000162735	PEX19	D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1	peroxisomal biogenesis factor 19	protein-coding
95135	chr17	35047701	35048030	+	0	NA	intron (NR_037713, intron 1 of 6)	AluSx1|SINE|Alu	15842	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
234044	chrX	3919401	3921080	+	0	NA	non-coding (NR_146579, exon 1 of 4)	non-coding (NR_146579, exon 1 of 4)	502	NR_146579	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
105648	chr18	2247471	2247630	+	0	NA	Intergenic	L1PA2|LINE|L1	323955	NM_022840	64863		NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase 4, N6-adenosine	protein-coding
168419	chr3	142438721	142438980	+	0	NA	intron (NM_019001, intron 1 of 41)	HERV17-int|LTR|ERV1	9187	NM_019001	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
227790	chr9	93133311	93135450	+	0	NA	promoter-TSS (NM_004148)	promoter-TSS (NM_004148)	-129	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
119551	chr19	40602071	40602750	+	0	NA	intron (NM_001042545, intron 1 of 29)	intron (NM_001042545, intron 1 of 29)	1041	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
129504	chr2	69633251	69633550	+	0	NA	intron (NM_001371577, intron 2 of 14)	AluSc|SINE|Alu	10338	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
56206	chr12	111482421	111482780	+	0	NA	intron (NR_132311, intron 17 of 23)	intron (NR_132311, intron 17 of 23)	47738	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
209050	chr7	74669071	74669630	+	0	NA	intron (NM_001163636, intron 1 of 33)	AluSz|SINE|Alu	11632	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
178842	chr4	153683901	153684980	+	0	NA	intron (NM_001318791, intron 1 of 2)	CpG	160	NM_003264	7097		NM_003264	ENSG00000137462	TLR2	CD282|TIL4	toll like receptor 2	protein-coding
219262	chr8	67335121	67335380	+	0	NA	intron (NM_006421, intron 1 of 38)	AluY|SINE|Alu	8531	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
133695	chr2	127196971	127197230	+	0	NA	intron (NM_001367501, intron 4 of 7)	intron (NM_001367501, intron 4 of 7)	8667	NM_001001665	339761		NM_001001665	ENSG00000186684	CYP27C1	-	cytochrome P450 family 27 subfamily C member 1	protein-coding
85182	chr16	46839371	46839530	+	0	NA	Intergenic	AluSq|SINE|Alu	-8270	NR_145834	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
57403	chr12	121828471	121828630	+	0	NA	intron (NM_001353345, intron 16 of 16)	MER3|DNA|hAT-Charlie	24541	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
23826	chr1	234523621	234523950	+	0	NA	Intergenic	Intergenic	7994	NR_038426	100506795		NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
234450	chrX	17591201	17591400	+	0	NA	intron (NM_001291867, intron 1 of 8)	intron (NM_001291867, intron 1 of 8)	-32173	NR_046632	100873920		NR_046632		NHS-AS1	-	NHS antisense RNA 1	ncRNA
171921	chr4	854651	855150	+	0	NA	intron (NM_001318134, intron 21 of 24)	AluY|SINE|Alu	-28771	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
53175	chr12	59403301	59403500	+	0	NA	Intergenic	Intergenic	-192629	NM_001270623	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
131675	chr2	97708671	97709150	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-4666	NM_001079	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
61492	chr13	52599921	52600530	+	0	NA	Intergenic	CpG	-17300	NM_001011724	144983		NM_001011724	ENSG00000139675	HNRNPA1L2	-	heterogeneous nuclear ribonucleoprotein A1 like 2	protein-coding
138478	chr2	206859021	206859680	+	0	NA	Intergenic	Intergenic	-76042	NR_036077	100422993		NR_036077	ENSG00000283469	MIR3130-1	MIR3130-3|mir-3130-1	microRNA 3130-1	ncRNA
118149	chr19	35009521	35009780	+	0	NA	intron (NM_001320034, intron 3 of 18)	MIRb|SINE|MIR	9327	NM_001136199	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
209444	chr7	76401171	76401530	+	0	NA	intron (NM_080744, intron 2 of 10)	intron (NM_080744, intron 2 of 10)	3828	NM_007155	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
11266	chr1	89063901	89064500	+	0	NA	intron (NM_002053, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	1008	NM_002053	2633		NM_002053	ENSG00000117228	GBP1	hGBP1	guanylate binding protein 1	protein-coding
73684	chr15	44830651	44830950	+	0	NA	intron (NR_146394, intron 8 of 9)	intron (NR_146394, intron 8 of 9)	51819	NR_146393	653381		NR_146393	ENSG00000290387	SORD2P	SORD2	sorbitol dehydrogenase 2, pseudogene	pseudo
154602	chr22	36293201	36294600	+	0	NA	intron (NM_002473, intron 28 of 40)	intron (NM_002473, intron 28 of 40)	-6993	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
151082	chr21	44821621	44822280	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-3821	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
7280	chr1	32377671	32378200	+	0	NA	intron (NM_018045, intron 8 of 10)	intron (NM_018045, intron 8 of 10)	15396	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
137644	chr2	197406851	197407150	+	0	NA	intron (NM_012433, intron 9 of 24)	AluJo|SINE|Alu	28028	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
175664	chr4	76949401	76951400	+	0	NA	intron (NM_018243, intron 1 of 9)	CpG-21283	648	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
46957	chr11	134583321	134583680	+	0	NA	Intergenic	Intergenic	147018	NR_033852	283177		NR_033852	ENSG00000255545	B3GAT1-DT	-	B3GAT1 divergent transcript	ncRNA
2896	chr1	11663751	11665230	+	0	NA	intron (NM_018438, intron 1 of 5)	CpG	290	NM_018438	26270		NM_018438	ENSG00000116663	FBXO6	FBG2|FBS2|FBX6|Fbx6b	F-box protein 6	protein-coding
118092	chr19	34395451	34395750	+	0	NA	intron (NM_001184722, intron 12 of 17)	intron (NM_001184722, intron 12 of 17)	-8798	NM_001353433	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
220416	chr8	100277251	100277550	+	0	NA	intron (NM_183419, intron 2 of 9)	AluY|SINE|Alu	24793	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
158012	chr22	49901171	49901330	+	0	NA	3' UTR (NM_024105, exon 10 of 10)	3' UTR (NM_024105, exon 10 of 10)	17188	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
222590	chr8	140955301	140955900	+	0	NA	intron (NM_001352719, intron 1 of 32)	intron (NM_001352719, intron 1 of 32)	45404	NM_001352710	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
59708	chr13	29630971	29631130	+	0	NA	Intergenic	L1PA7|LINE|L1	-16643	NR_135320	102723345		NR_135320		LOC102723345	-	uncharacterized LOC102723345	ncRNA
154952	chr22	37247421	37248080	+	0	NA	Intergenic	Intergenic	-3481	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
142425	chr20	3902821	3903550	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluSx|SINE|Alu	13369	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
148754	chr21	7813521	7813800	+	0	NA	Intergenic	Intergenic	15972	NM_001369869	102723475		NM_001330065	ENSG00000276289	LOC102723475	KCNE1B	potassium voltage-gated channel subfamily E regulatory subunit 1B	protein-coding
10449	chr1	66278101	66278780	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-53668	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
93993	chr17	22298471	22298630	+	0	NA	promoter-TSS (NR_028336)	promoter-TSS (NR_028336)	-214	NR_028336	284123		NM_203392	ENSG00000178130	FAM27E5	FAM27L	family with sequence similarity E5	ncRNA
196761	chr6	45439101	45440480	+	0	NA	intron (NM_001278478, intron 3 of 5)	intron (NM_001278478, intron 3 of 5)	17515	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
148903	chr21	8472151	8472250	+	0	NA	Intergenic	AluY|SINE|Alu	31054	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
93822	chr17	20797271	20797630	+	0	NA	Intergenic	Intergenic	-71077	NR_160710	440416		NR_104185	ENSG00000233098	CCDC144NL-AS1	-	CCDC144NL antisense RNA 1	ncRNA
14588	chr1	145196451	145196830	+	0	NA	intron (NR_156690, intron 1 of 3)	MLT1A|LTR|ERVL-MaLR	-18211	NR_148945	100996740		NR_148945		LOC100996740	-	uncharacterized LOC100996740	ncRNA
121818	chr19	47938221	47938580	+	0	NA	Intergenic	AluSp|SINE|Alu	-1141	NR_024218	100170219		NR_024218		SNAR-C4	-	small NF90 (ILF3) associated RNA C4	snRNA
145988	chr20	46368201	46368400	+	0	NA	intron (NM_182764, intron 20 of 20)	intron (NM_182764, intron 20 of 20)	-3842	NM_001281458	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
12191	chr1	100376921	100377180	+	0	NA	intron (NM_001319210, intron 2 of 16)	AluSp|SINE|Alu	24544	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
114877	chr19	13877601	13877880	+	0	NA	exon (NM_001098622, exon 1 of 2)	exon (NM_001098622, exon 1 of 2)	491	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
58077	chr12	124555501	124555700	+	0	NA	intron (NM_001077261, intron 1 of 47)	MIR|SINE|MIR	12012	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
208775	chr7	73564321	73564650	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-6795	NM_001197244	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
166581	chr3	118863851	118864150	+	0	NA	Intergenic	L1MA2|LINE|L1	-53167	NR_135547	105374060		NR_135547		LOC105374060	-	uncharacterized LOC105374060	ncRNA
46435	chr11	128040671	128041330	+	0	NA	Intergenic	Intergenic	-167766	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
180655	chr5	17525501	17526080	+	0	NA	Intergenic	Intergenic	-33714	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
31934	chr10	100567221	100567480	+	0	NA	Intergenic	Intergenic	31407	NM_017902	55662		NM_017902	ENSG00000166135	HIF1AN	FIH1	hypoxia inducible factor 1 subunit alpha inhibitor	protein-coding
12898	chr1	110383321	110384000	+	0	NA	intron (NM_004696, intron 2 of 8)	LTR8|LTR|ERV1	7366	NM_001201546	9122		NM_004696	ENSG00000168679	SLC16A4	MCT4|MCT5	solute carrier family 16 member 4	protein-coding
167138	chr3	127762751	127762850	+	0	NA	intron (NM_001003794, intron 3 of 7)	MIR|SINE|MIR	60082	NM_007283	11343		NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding
136153	chr2	174334721	174335280	+	0	NA	promoter-TSS (NM_001145250)	promoter-TSS (NM_001145250)	46	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
59342	chr13	24583651	24584050	+	0	NA	intron (NR_002815, intron 2 of 8)	intron (NR_002815, intron 2 of 8)	3642	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
86250	chr16	58299851	58299950	+	0	NA	Intergenic	L1MEd|LINE|L1	-4853	NM_001080492	221191		NM_001080492	ENSG00000103023	PRSS54	CT67|KLKBL4	serine protease 54	protein-coding
128888	chr2	64125001	64125400	+	0	NA	intron (NM_020651, intron 1 of 6)	MER21C|LTR|ERVL	19220	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
218999	chr8	63171071	63171630	+	0	NA	intron (NM_001277816, intron 2 of 3)	intron (NM_001277816, intron 2 of 3)	2347	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
148653	chr21	6109071	6109650	+	0	NA	Intergenic	Intergenic	-1771	NM_001320643	102724428		NM_001320643	ENSG00000275993	LOC102724428	SIK|SIK-1|SIK1|SIK1B|SNF1LK	salt inducible kinase 1B (putative)	protein-coding
194943	chr6	35257701	35257900	+	0	NA	Intergenic	Intergenic	-1935	NM_003427	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
125803	chr2	24046851	24047880	+	0	NA	promoter-TSS (NM_001142319)	promoter-TSS (NM_001142319)	26	NM_025203	80304		NM_025203	ENSG00000163026	WDCP	C2orf44|MMAP|PP384	WD repeat and coiled coil containing	protein-coding
110379	chr19	1919671	1919830	+	0	NA	intron (NM_079834, intron 5 of 6)	AluSx1|SINE|Alu	14351	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
200241	chr6	131917151	131917530	+	0	NA	Intergenic	Intergenic	34032	NM_001901	1490		NM_001901	ENSG00000118523	CCN2	CTGF|HCS24|IBP-8|IGFBP8|NOV2	cellular communication network factor 2	protein-coding
14312	chr1	143833371	143833530	+	0	NA	Intergenic	tRNA-His-CAY_|tRNA|tRNA	39850	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
175763	chr4	77768851	77769150	+	0	NA	intron (NM_144571, intron 4 of 11)	L1ME3E|LINE|L1	50064	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
137743	chr2	197847721	197848780	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	43657	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
95514	chr17	36534101	36535000	+	0	NA	promoter-TSS (NM_001346755)	promoter-TSS (NM_001346755)	-212	NM_001346755	284098		NM_178517	ENSG00000277161	PIGW	Gwt1|HPMRS5	phosphatidylinositol glycan anchor biosynthesis class W	protein-coding
141202	chr2	239331071	239331630	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	20454	NR_039948	100616360		NR_039948	ENSG00000264292	MIR2467	mir-2467	microRNA 2467	ncRNA
196490	chr6	43631201	43631700	+	0	NA	intron (NM_001003690, intron 1 of 3)	intron (NM_001003690, intron 1 of 3)	1908	NM_001003690	9587		NM_014628	ENSG00000124688	MAD2L1BP	CMT2|p31comet	MAD2L1 binding protein	protein-coding
187862	chr5	147822421	147822930	+	0	NA	Intergenic	Intergenic	8996	NM_001379610	6690		NM_003122	ENSG00000164266	SPINK1	PCTT|PSTI|Spink3|TATI|TCP	serine peptidase inhibitor Kazal type 1	protein-coding
67339	chr14	69658721	69659180	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	47354	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
180905	chr5	34190251	34190800	+	0	NA	non-coding (NR_157803, exon 1 of 1)	non-coding (NR_157803, exon 1 of 1)	944	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
155826	chr22	39386901	39387430	+	0	NA	Intergenic	L2a|LINE|L2	-12615	NM_006116	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
99317	chr17	49831571	49832300	+	0	NA	3' UTR (NM_007067, exon 15 of 15)	3' UTR (NM_007067, exon 15 of 15)	-13951	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
107627	chr18	48940581	48941980	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	1527	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
56881	chr12	120298821	120299080	+	0	NA	intron (NM_001385735, intron 1 of 3)	AluY|SINE|Alu	-3371	NM_001385734	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
74593	chr15	60566321	60567130	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	25801	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
237629	chrX	124017971	124018600	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	56579	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
30557	chr10	79710051	79711030	+	0	NA	exon (NM_001278495, exon 5 of 7)	exon (NM_001278495, exon 5 of 7)	7313	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
39648	chr11	61579421	61579950	+	0	NA	intron (NM_001370211, intron 1 of 7)	intron (NM_001370211, intron 1 of 7)	1187	NM_001252065	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
182659	chr5	67206501	67207900	+	0	NA	Intergenic	Intergenic	-10401	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
126422	chr2	27735321	27736180	+	0	NA	intron (NR_160725, intron 2 of 2)	CpG	19627	NR_160725	105374378		NR_160725		LOC105374378	-	uncharacterized LOC105374378	ncRNA
56188	chr12	111438071	111439330	+	0	NA	intron (NM_001291424, intron 1 of 6)	L2a|LINE|L2	3838	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
112840	chr19	7533721	7534500	+	0	NA	promoter-TSS (NM_001166113)	promoter-TSS (NM_001166113)	-54	NM_006702	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
101171	chr17	65136171	65136330	+	0	NA	Intergenic	L1MC1|LINE|L1	-1120	NM_001081955	8787		NM_003835	ENSG00000108370	RGS9	PERRS|PERRS1|RGS9L	regulator of G protein signaling 9	protein-coding
217058	chr8	23404901	23405100	+	0	NA	promoter-TSS (NM_002318)	promoter-TSS (NM_002318)	-880	NM_002318	4017		NM_002318	ENSG00000134013	LOXL2	LOR|LOR2|WS9-14	lysyl oxidase like 2	protein-coding
72883	chr15	40311101	40311300	+	0	NA	Intergenic	Intergenic	-3265	NM_001284297	5330		NM_004573	ENSG00000137841	PLCB2	PLC-beta-2	phospholipase C beta 2	protein-coding
76718	chr15	76057171	76057660	+	0	NA	Intergenic	Intergenic	-2570	NM_152335	123591		NM_152335	ENSG00000169758	TMEM266	C15orf27|HVRP1|HsHVRP1|hTMEM266	transmembrane protein 266	protein-coding
112375	chr19	6023271	6023430	+	0	NA	intron (NM_134433, intron 5 of 16)	intron (NM_134433, intron 5 of 16)	44947	NR_046376	100128568		NR_046376	ENSG00000266983	RANBP3-DT	-	RANBP3 divergent transcript	ncRNA
130021	chr2	74205701	74207000	+	0	NA	intron (NR_027405, intron 3 of 8)	intron (NR_027405, intron 3 of 8)	7735	NM_006636	10797		NM_006636	ENSG00000065911	MTHFD2	NMDMC	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	protein-coding
153186	chr22	23842571	23843030	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-3794	NM_198440	91319		NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding
13136	chr1	111659971	111660930	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-4344	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
110073	chr19	1502251	1502550	+	0	NA	Intergenic	AluSq2|SINE|Alu	10619	NM_001367197	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
218124	chr8	41566771	41567550	+	0	NA	intron (NR_125824, intron 1 of 2)	CpG	-11040	NM_178819	137964		NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
165067	chr3	71457671	71458300	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	84104	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
109429	chr19	708451	709250	+	0	NA	promoter-TSS (NM_001040134)	promoter-TSS (NM_001040134)	-85	NM_001040134	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
239427	chrY	56686851	56687100	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-267280	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
43061	chr11	74417301	74417900	+	0	NA	Intergenic	Intergenic	18363	NR_039710	100616215		NR_039710	ENSG00000264402	MIR548AL	-	microRNA 548al	ncRNA
34245	chr10	130179651	130179950	+	0	NA	TTS (NM_001321980)	TTS (NM_001321980)	43391	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
182909	chr5	70448901	70449100	+	0	NA	non-coding (NR_033417, exon 15 of 15)	non-coding (NR_033417, exon 15 of 15)	33626	NM_001515	2966		NM_001515	ENSG00000145736	GTF2H2	BTF2|BTF2 p44|BTF2P44|T-BTF2P44|TFIIH|p44	general transcription factor IIH subunit 2	protein-coding
227338	chr9	89459021	89459700	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	20530	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
55057	chr12	96445351	96446930	+	0	NA	Intergenic	Intergenic	-43437	NM_001306084	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
32170	chr10	101566471	101567430	+	0	NA	Intergenic	CpG	21307	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
205112	chr7	6849701	6850100	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-23625	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
179207	chr4	173420301	173420750	+	0	NA	intron (NM_001329597, intron 2 of 3)	intron (NM_001329597, intron 2 of 3)	-21409	NM_007281	11341		NM_007281	ENSG00000164106	SCRG1	SCRG-1|lincSCRG1	stimulator of chondrogenesis 1	protein-coding
56723	chr12	120113571	120114400	+	0	NA	intron (NM_006861, intron 1 of 5)	MIR|SINE|MIR	2768	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
162272	chr3	47309721	47310180	+	0	NA	intron (NM_025010, intron 1 of 9)	SVA_C|Retroposon|SVA	27006	NM_025010	23276		NM_025010	ENSG00000114648	KLHL18	-	kelch like family member 18	protein-coding
6886	chr1	31414901	31415300	+	0	NA	intron (NM_001199039, intron 1 of 10)	MIR3|SINE|MIR	1287	NM_018565	347735		NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
38062	chr11	35179921	35180500	+	0	NA	intron (NM_001001392, intron 2 of 3)	intron (NM_001001392, intron 2 of 3)	17260	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
84157	chr16	29756451	29756950	+	0	NA	Intergenic	AluSc5|SINE|Alu	-10710	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
37186	chr11	14202501	14202700	+	0	NA	intron (NM_006108, intron 6 of 15)	intron (NM_006108, intron 6 of 15)	155885	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
145549	chr20	44205571	44205800	+	0	NA	intron (NM_016470, intron 2 of 3)	AluY|SINE|Alu	5086	NM_016470	51526		NM_016470	ENSG00000132823	OSER1	C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1	oxidative stress responsive serine rich 1	protein-coding
5912	chr1	26835601	26835800	+	0	NA	intron (NM_032283, intron 2 of 7)	AluSc5|SINE|Alu	9012	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
72721	chr15	38683151	38684040	+	0	NA	Intergenic	Intergenic	-13003	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
21423	chr1	205320471	205320700	+	0	NA	intron (NM_030952, intron 1 of 6)	MIRb|SINE|MIR	1160	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
63926	chr14	21996171	21996600	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-325368	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
140429	chr2	233116951	233117680	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	56973	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
60608	chr13	42056601	42056800	+	0	NA	intron (NM_001204504, intron 2 of 29)	intron (NM_001204504, intron 2 of 29)	8052	NM_178009	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
204276	chr7	2645021	2646080	+	0	NA	intron (NM_025250, intron 1 of 13)	intron (NM_025250, intron 1 of 13)	13564	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
21375	chr1	205186201	205186600	+	0	NA	intron (NM_015375, intron 2 of 12)	intron (NM_015375, intron 2 of 12)	25302	NM_199462	25778		NM_015375	ENSG00000133059	DSTYK	CAKUT1|DustyPK|HDCMD38P|RHDNS1|RIP5|RIPK5|SPG23	dual serine/threonine and tyrosine protein kinase	protein-coding
6820	chr1	30972371	30972900	+	0	NA	intron (NM_014676, intron 10 of 21)	AluSz|SINE|Alu	-4398	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
176710	chr4	101186971	101187130	+	0	NA	intron (NM_001130692, intron 2 of 11)	MIRc|SINE|MIR	53822	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA
179513	chr4	184761971	184762880	+	0	NA	exon (NM_001286710, exon 17 of 21)	exon (NM_001286710, exon 17 of 21)	-28329	NR_104593	79682		NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
108129	chr18	62413671	62413830	+	0	NA	Intergenic	Intergenic	88440	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
219424	chr8	71827571	71828300	+	0	NA	Intergenic	AluJb|SINE|Alu	-15188	NR_033652	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
57909	chr12	123468651	123469350	+	0	NA	intron (NR_104103, intron 1 of 1)	intron (NR_104103, intron 1 of 1)	9296	NM_180699	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
238127	chrX	136674301	136675480	+	0	NA	intron (NM_004840, intron 19 of 21)	intron (NM_004840, intron 19 of 21)	26732	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
154856	chr22	37123271	37123430	+	0	NA	Intergenic	L2c|LINE|L2	-13637	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
60494	chr13	41311701	41312700	+	0	NA	promoter-TSS (NM_001354074)	promoter-TSS (NM_001354074)	-162	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
163370	chr3	50479151	50479680	+	0	NA	intron (NM_001291101, intron 1 of 37)	Tigger19a|DNA|TcMar-Tigger	24219	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
32710	chr10	104127351	104127650	+	0	NA	Intergenic	Intergenic	5329	NM_001002759	119392		NM_145247	ENSG00000156384	SFR1	C10orf78|MEI5|MEIR5|bA373N18.1	SWI5 dependent homologous recombination repair protein 1	protein-coding
53927	chr12	71733821	71733900	+	0	NA	Intergenic	AluYc|SINE|Alu	-21003	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
163845	chr3	52480701	52481100	+	0	NA	3' UTR (NM_001276293, exon 13 of 13)	3' UTR (NM_001276293, exon 13 of 13)	-14438	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
165106	chr3	71579351	71579650	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	4228	NM_001349338	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
6483	chr1	28366851	28367350	+	0	NA	Intergenic	AluY|SINE|Alu	-2640	NM_001350161	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
199364	chr6	116217071	116217500	+	0	NA	intron (NM_152729, intron 6 of 11)	intron (NM_152729, intron 6 of 11)	36790	NM_021648	23270		NM_021648	ENSG00000187189	TSPYL4	dJ486I3.2	TSPY like 4	protein-coding
34032	chr10	124722871	124723750	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	19282	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
13403	chr1	113963221	113963780	+	0	NA	exon (NM_001369807, exon 10 of 16)	exon (NM_001369807, exon 10 of 16)	9623	NM_181358	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
40641	chr11	64724851	64724950	+	0	NA	Intergenic	Intergenic	-1703	NM_001376267	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
82569	chr16	18768201	18768600	+	0	NA	Intergenic	Intergenic	21934	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
65056	chr14	39272521	39272780	+	0	NA	intron (NM_203355, intron 1 of 22)	AluJb|SINE|Alu	5265	NM_001354144	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
188059	chr5	150002971	150003630	+	0	NA	intron (NM_001366501, intron 1 of 18)	intron (NM_001366501, intron 1 of 18)	2561	NM_014983	22993		NM_014983	ENSG00000113716	HMGXB3	HMGX3|SMF	HMG-box containing 3	protein-coding
184919	chr5	112922001	112922710	+	0	NA	promoter-TSS (NM_005669)	promoter-TSS (NM_005669)	-128	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
131392	chr2	96262151	96262250	+	0	NA	intron (NM_017849, intron 2 of 3)	AluSx1|SINE|Alu	3797	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
187966	chr5	149416021	149416100	+	0	NA	intron (NR_105060, intron 1 of 4)	AluSx3|SINE|Alu	9215	NR_105060	728264		NR_027180		CARMN	CARMEN|MIR143HG	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA
155044	chr22	37490821	37491080	+	0	NA	3' UTR (NM_014550, exon 20 of 20)	3' UTR (NM_014550, exon 20 of 20)	-4563	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
76871	chr15	77952451	77952550	+	0	NA	Intergenic	Intergenic	-7939	NR_157580	440292		NR_157580		COMMD4P1	-	COMM domain containing 4 pseudogene 1	pseudo
176567	chr4	98642671	98643600	+	0	NA	intron (NM_005723, intron 1 of 7)	Tigger3b|DNA|TcMar-Tigger	15476	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
198891	chr6	109485371	109485630	+	0	NA	Intergenic	MER53|DNA|hAT	-2263	NM_001164313	9841		NM_014797	ENSG00000112365	ZBTB24	BIF1|ICF2|PATZ2|ZNF450	zinc finger and BTB domain containing 24	protein-coding
196389	chr6	43274871	43275650	+	0	NA	intron (NM_032538, intron 13 of 14)	CpG	-23000	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
230273	chr9	127920371	127920750	+	0	NA	TTS (NM_001135219)	TTS (NM_001135219)	-3519	NM_175039	27090		NM_014403	ENSG00000136840	ST6GALNAC4	IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding
79156	chr16	277501	277900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1756	NM_001286485	8786		NM_003834	ENSG00000076344	RGS11	RS11	regulator of G protein signaling 11	protein-coding
99259	chr17	49728471	49728780	+	0	NA	intron (NM_030802, intron 2 of 7)	intron (NM_030802, intron 2 of 7)	-20661	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
76178	chr15	73143121	73143380	+	0	NA	intron (NM_001172623, intron 5 of 27)	intron (NM_001172623, intron 5 of 27)	90766	NM_001172623	4756		NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
52873	chr12	57181071	57181730	+	0	NA	intron (NM_002332, intron 34 of 88)	intron (NM_002332, intron 34 of 88)	-13104	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
142359	chr20	3768401	3769380	+	0	NA	promoter-TSS (NR_047675)	promoter-TSS (NR_047675)	-502	NR_047675	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
107771	chr18	50970221	50970480	+	0	NA	intron (NM_018696, intron 1 of 3)	L1MC5a|LINE|L1	2310	NM_018696	55520		NM_018696	ENSG00000141642	ELAC1	D29	elaC ribonuclease Z 1	protein-coding
210221	chr7	99327101	99327300	+	0	NA	intron (NM_001190996, intron 1 of 9)	intron (NM_001190996, intron 1 of 9)	1302	NM_006409	10552		NM_006409	ENSG00000241685	ARPC1A	Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L	actin related protein 2/3 complex subunit 1A	protein-coding
82738	chr16	21383771	21384130	+	0	NA	intron (NR_045011, intron 5 of 5)	intron (NR_045011, intron 5 of 5)	34587	NR_045011	100652781		NM_001012391		SNX29P1	RUNDC2B|RUNDC2L	sorting nexin 29 pseudogene 1	pseudo
30932	chr10	87301401	87302280	+	0	NA	intron (NR_024397, intron 3 of 5)	intron (NR_024397, intron 3 of 5)	-40571	NR_029408	439994		NR_029408	ENSG00000224914	LINC00863	-	long intergenic non-protein coding RNA 863	ncRNA
19383	chr1	174018001	174018200	+	0	NA	intron (NM_172071, intron 1 of 19)	AluJr|SINE|Alu	4257	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
63650	chr14	20975051	20975150	+	0	NA	Intergenic	Intergenic	-14880	NM_001029991	64745		NM_022734	ENSG00000165792	METTL17	METT11D1	methyltransferase like 17	protein-coding
143267	chr20	25148151	25148910	+	0	NA	promoter-TSS (NR_027093)	promoter-TSS (NR_027093)	195	NR_027092	284798		NR_027091	ENSG00000230725	LOC284798	-	uncharacterized LOC284798	ncRNA
193938	chr6	31655771	31656900	+	0	NA	intron (NM_019101, intron 1 of 5)	L3|LINE|CR1	441	NM_019101	55937		NM_019101	ENSG00000204444	APOM	G3a|HSPC336|NG20|apo-M	apolipoprotein M	protein-coding
137258	chr2	193347401	193348030	+	0	NA	Intergenic	MER41A|LTR|ERV1	597870	NR_152587	64002		NR_002769	ENSG00000227418	PCGEM1	LINC00071|NCRNA00071|PCAT9	PCGEM1 prostate-specific transcript	ncRNA
166233	chr3	112128721	112129400	+	0	NA	intron (NM_001190259, intron 2 of 5)	intron (NM_001190259, intron 2 of 5)	4188	NM_152785	257144		NM_152785	ENSG00000174500	GCSAM	GCAT2|GCET2|HGAL	germinal center associated signaling and motility	protein-coding
196083	chr6	42294651	42295130	+	0	NA	intron (NM_033502, intron 4 of 17)	intron (NM_033502, intron 4 of 17)	-77029	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
78087	chr15	90232251	90232500	+	0	NA	exon (NM_001277764, exon 3 of 7)	exon (NM_001277764, exon 3 of 7)	1566	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
124484	chr19	58560751	58561530	+	0	NA	TTS (NM_001267033)	TTS (NM_001267033)	1954	NR_027334	100131691		NR_027334	ENSG00000267858	MZF1-AS1	-	MZF1 antisense RNA 1	ncRNA
68283	chr14	77120701	77120940	+	0	NA	Intergenic	Intergenic	19924	NM_001364172	283576		NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type palmitoyltransferase 22	protein-coding
104575	chr17	81379251	81379900	+	0	NA	intron (NR_164137, intron 3 of 3)	intron (NR_164137, intron 3 of 3)	5550	NR_164138	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
2003	chr1	6741771	6742430	+	0	NA	Intergenic	AluSz|SINE|Alu	14573	NR_104621	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
188353	chr5	151740521	151741230	+	0	NA	Intergenic	Intergenic	17756	NM_004045	475		NM_004045	ENSG00000177556	ATOX1	ATX1|HAH1	antioxidant 1 copper chaperone	protein-coding
86451	chr16	66927721	66928080	+	0	NA	Intergenic	Intergenic	-2364	NM_001128850	6236		NM_004165	ENSG00000166592	RRAD	RAD|RAD1|REM3	RRAD, Ras related glycolysis inhibitor and calcium channel regulator	protein-coding
61595	chr13	72839771	72840080	+	0	NA	intron (NM_006346, intron 9 of 17)	intron (NM_006346, intron 9 of 17)	57792	NR_146206	10464		NM_006346	ENSG00000083535	PIBF1	C13orf24|CEP90|JBTS33|PIBF	progesterone immunomodulatory binding factor 1	protein-coding
187998	chr5	149534601	149536200	+	0	NA	intron (NM_001892, intron 2 of 9)	intron (NM_001892, intron 2 of 9)	14965	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
216935	chr8	22847901	22848530	+	0	NA	intron (NM_001363233, intron 3 of 6)	intron (NM_001363233, intron 3 of 6)	-29757	NR_125433	101929237		NR_125433	ENSG00000248738	LOC101929237	-	uncharacterized LOC101929237	ncRNA
96797	chr17	41868301	41868900	+	0	NA	intron (NM_001096, intron 28 of 28)	A-rich|Low_complexity|Low_complexity	-3177	NM_018143	55175		NM_018143	ENSG00000178502	KLHL11	-	kelch like family member 11	protein-coding
117647	chr19	23776851	23777150	+	0	NA	intron (NR_149352, intron 1 of 1)	BSR/Beta|Satellite|Satellite	13996	NR_149351	388524		NM_001005472	ENSG00000288920	RPSA2	37LRP|67LR|LBP/p40|LRP/LR|LamR|RPSAP58|RPSA_30_1642	ribosomal protein SA 2	protein-coding
18789	chr1	167552821	167554400	+	0	NA	exon (NM_003851, exon 1 of 4)	exon (NM_003851, exon 1 of 4)	152	NM_003851	8804		NM_003851	ENSG00000143162	CREG1	CREG	cellular repressor of E1A stimulated genes 1	protein-coding
169060	chr3	153284321	153284830	+	0	NA	Intergenic	Intergenic	122349	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
29090	chr10	68061351	68061680	+	0	NA	intron (NM_001278185, intron 3 of 23)	AluY|SINE|Alu	13768	NM_015601	26091		NM_015601	ENSG00000148634	HERC4	-	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein-coding
235420	chrX	45767101	45767780	+	0	NA	Intergenic	Intergenic	-20316	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
31047	chr10	88934571	88935100	+	0	NA	TTS (NM_001613)	TTS (NM_001613)	2151	NR_125373	100132116		NR_125373	ENSG00000180139	ACTA2-AS1	UC001kfo|ZXF1|uc001kfo.1	ACTA2 antisense RNA 1	ncRNA
131143	chr2	91508051	91508430	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	151709	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
193074	chr6	28728771	28729730	+	0	NA	Intergenic	Intergenic	-74775	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
68076	chr14	75270471	75271250	+	0	NA	Intergenic	Intergenic	-7968	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
142053	chr20	1817921	1818180	+	0	NA	Intergenic	Intergenic	-38304	NR_037142	100289473		NR_037142	ENSG00000293374	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
178979	chr4	163161971	163162130	+	0	NA	intron (NM_138386, intron 2 of 7)	intron (NM_138386, intron 2 of 7)	4840	NM_001128931	92345		NM_138386	ENSG00000145414	NAF1	PFBMFT7	nuclear assembly factor 1 ribonucleoprotein	protein-coding
9529	chr1	51473821	51474080	+	0	NA	intron (NM_001981, intron 2 of 24)	intron (NM_001981, intron 2 of 24)	45316	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
208144	chr7	64306551	64307970	+	0	NA	Intergenic	Intergenic	-6613	NM_001294255	728927		NM_001170905	ENSG00000234444	ZNF736	-	zinc finger protein 736	protein-coding
119449	chr19	40409801	40410000	+	0	NA	intron (NM_020956, intron 1 of 5)	MIRb|SINE|MIR	3464	NM_020956	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
155922	chr22	39601951	39602830	+	0	NA	intron (NM_001003406, intron 3 of 35)	intron (NM_001003406, intron 3 of 35)	31637	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
230540	chr9	128392971	128393330	+	0	NA	promoter-TSS (NR_029837)	promoter-TSS (NR_029837)	-436	NR_029837	407003		NR_029837	ENSG00000284185	MIR219A2	MIR219-2|MIRN219-2|hsa-mir-219a-2|mir-219a-2	microRNA 219a-2	ncRNA
161738	chr3	44440751	44440850	+	0	NA	promoter-TSS (NM_001375977)	promoter-TSS (NM_001375977)	-902	NM_001375977								
140355	chr2	232693751	232695100	+	0	NA	Intergenic	Intergenic	-2906	NM_001103148	26058		NM_015575	ENSG00000204120	GIGYF2	GYF2|PARK11|PERQ2|PERQ3|TNRC15	GRB10 interacting GYF protein 2	protein-coding
126786	chr2	30265821	30267930	+	0	NA	Intergenic	Intergenic	35341	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
61560	chr13	66058951	66059050	+	0	NA	Intergenic	L1P3|LINE|L1	-92571	NR_039692	100616302		NR_039692	ENSG00000263581	MIR548X2	-	microRNA 548x-2	ncRNA
175081	chr4	54098021	54098400	+	0	NA	Intergenic	Intergenic	-1953	NM_133267	170825		NM_133267	ENSG00000180613	GSX2	DMJDS2|GSH2	GS homeobox 2	protein-coding
139178	chr2	219210971	219212280	+	0	NA	intron (NM_001349828, intron 13 of 17)	intron (NM_001349828, intron 13 of 17)	4841	NM_001270999	130617		NM_138802	ENSG00000158552	ZFAND2B	AIRAPL	zinc finger AN1-type containing 2B	protein-coding
1348	chr1	2483171	2483630	+	0	NA	intron (NM_001303013, intron 4 of 21)	intron (NM_001303013, intron 4 of 21)	7085	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
29065	chr10	67885801	67886850	+	0	NA	intron (NM_001142498, intron 1 of 7)	AluJo|SINE|Alu	1144	NM_001142498	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
102820	chr17	76456621	76457330	+	0	NA	intron (NM_001166579, intron 1 of 6)	intron (NM_001166579, intron 1 of 6)	3624	NM_001166579	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
79398	chr16	667251	669480	+	0	NA	TTS (NM_145294)	TTS (NM_145294)	233	NM_001352284	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
53674	chr12	68445451	68445750	+	0	NA	intron (NR_120458, intron 1 of 3)	AluSx4|SINE|Alu	5884	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
2493	chr1	9683051	9683550	+	0	NA	intron (NR_126368, intron 1 of 1)	AluY|SINE|Alu	4274	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
123676	chr19	54965151	54965450	+	0	NA	promoter-TSS (NM_001174081).7	promoter-TSS (NM_001174081).7	16	NM_001174081	55655		NM_017852	ENSG00000022556	NLRP2	CLR19.9|NALP2|NBS1|OZEMA18|PAN1|PYPAF2	NLR family pyrin domain containing 2	protein-coding
225306	chr9	34584951	34585050	+	0	NA	intron (NM_001207011, intron 1 of 9)	intron (NM_001207011, intron 1 of 9)	4724	NM_147164	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
46532	chr11	128460901	128461830	+	0	NA	3' UTR (NM_001330451, exon 7 of 7)	3' UTR (NM_001330451, exon 7 of 7)	60945	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
223170	chr8	143545021	143545280	+	0	NA	Intergenic	AluSg|SINE|Alu	-3703	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
53715	chr12	68612571	68613780	+	0	NA	intron (NM_001251917, intron 1 of 5)	AluSz|SINE|Alu	2276	NM_001251922	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
200374	chr6	134230401	134230600	+	0	NA	intron (NM_001143676, intron 2 of 13)	THE1D|LTR|ERVL-MaLR	-52639	NM_001143677	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
3743	chr1	16639351	16640000	+	0	NA	Intergenic	Intergenic	-5899	NR_027504	11209		NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
163527	chr3	51503351	51503450	+	0	NA	Intergenic	(CTTCTC)n|Simple_repeat|Simple_repeat	-3385	NM_001349169	9730		NM_014703	ENSG00000145041	DCAF1	RIP|VPRBP	DDB1 and CUL4 associated factor 1	protein-coding
104462	chr17	81108451	81108800	+	0	NA	intron (NM_001385147, intron 12 of 12)	intron (NM_001385147, intron 12 of 12)	11014	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
73185	chr15	41501271	41503450	+	0	NA	intron (NM_002220, intron 4 of 6)	CpG-8131	8486	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
231993	chr9	133345121	133345380	+	0	NA	exon (NM_181491, exon 3 of 4)	exon (NM_181491, exon 3 of 4)	2881	NM_133640	6837		NM_006752	ENSG00000148297	MED22	MED24|SRB6|SURF5|surf-5	mediator complex subunit 22	protein-coding
108994	chr18	79694051	79694800	+	0	NA	intron (NM_001202504, intron 1 of 12)	CpG	12995	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
11806	chr1	92804471	92805050	+	0	NA	Intergenic	MER65D|LTR|ERV1	-12350	NM_001308248	7813		NM_005665	ENSG00000067208	EVI5	EVI-5|NB4S	ecotropic viral integration site 5	protein-coding
191406	chr6	8434801	8435980	+	0	NA	promoter-TSS (NR_038979)	promoter-TSS (NR_038979)	155	NM_001370478	51000		NM_015948	ENSG00000124786	SLC35B3	C6orf196|CGI-19|PAPST2	solute carrier family 35 member B3	protein-coding
175200	chr4	56647451	56647750	+	0	NA	TTS (NM_032495)	TTS (NM_032495)	8922	NM_139211	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
238292	chrX	149485121	149485480	+	0	NA	intron (NM_001166550, intron 8 of 8)	L2|LINE|L2	20006	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
7226	chr1	32323471	32323830	+	0	NA	intron (NM_004964, intron 3 of 13)	AluSz6|SINE|Alu	12583	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
134874	chr2	148739471	148739880	+	0	NA	intron (NM_015630, intron 2 of 13)	Tigger16a|DNA|TcMar-Tigger	94924	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
47298	chr12	1665871	1666100	+	0	NA	Intergenic	AluSp|SINE|Alu	-5605	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
183211	chr5	76174921	76175530	+	0	NA	intron (NM_014979, intron 2 of 12)	intron (NM_014979, intron 2 of 12)	91842	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
109355	chr19	621701	621900	+	0	NA	exon (NM_005035, exon 10 of 21)	exon (NM_005035, exon 10 of 21)	11737	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
152612	chr22	21414371	21414530	+	0	NA	Intergenic	AluSx|SINE|Alu	-2921	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
141028	chr2	238184651	238184750	+	0	NA	intron (NM_030768, intron 6 of 11)	AluJo|SINE|Alu	18995	NM_030768	80895		NM_030768	ENSG00000132323	ILKAP	ILKAP2|ILKAP3|PP2C-DELTA|PP2CD|PPM1O	ILK associated serine/threonine phosphatase	protein-coding
112692	chr19	7064851	7065350	+	0	NA	Intergenic	L1MA10|LINE|L1	-4603	NM_001044387	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
43753	chr11	86143321	86144000	+	0	NA	Intergenic	Intergenic	-73800	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
1930	chr1	6487701	6488230	+	0	NA	intron (NM_198681, intron 2 of 21)	intron (NM_198681, intron 2 of 21)	-2011	NM_001042665	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
135353	chr2	160406621	160407400	+	0	NA	TTS (NR_039946)	TTS (NR_039946)	872	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
70972	chr14	104701671	104701830	+	0	NA	exon (NM_001031714, exon 2 of 22)	exon (NM_001031714, exon 2 of 22)	12132	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
82820	chr16	21488851	21489030	+	0	NA	intron (NR_027155, intron 1 of 28)	AluJo|SINE|Alu	-12586	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
36138	chr11	3126501	3126900	+	0	NA	intron (NM_145638, intron 2 of 20)	intron (NM_145638, intron 2 of 20)	38610	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
236984	chrX	101415351	101416300	+	0	NA	Intergenic	Intergenic	-2453	NR_028407	100131755		NM_152583	ENSG00000196440	ARMCX4	CXorf35|GASP4	armadillo repeat containing X-linked 4	protein-coding
226067	chr9	61864871	61865030	+	0	NA	Intergenic	Intergenic	-2335	NR_144466	105379807		NR_144466		LOC105379807	-	uncharacterized LOC105379807	ncRNA
66207	chr14	61287271	61287630	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6112	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
43086	chr11	74769251	74769580	+	0	NA	intron (NM_001098638, intron 1 of 5)	L1ME3C|LINE|L1	20566	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
143139	chr20	23919351	23921080	+	0	NA	Intergenic	Intergenic	-40467	NM_001900	1473		NM_001900	ENSG00000170367	CST5	-	cystatin D	protein-coding
76003	chr15	70891271	70891650	+	0	NA	promoter-TSS (NM_001199017)	promoter-TSS (NM_001199017)	973	NM_020147	56906		NM_020147	ENSG00000129028	THAP10	-	THAP domain containing 10	protein-coding
100326	chr17	59845671	59845830	+	0	NA	Intergenic	Intergenic	4484	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
129289	chr2	68452241	68454550	+	0	NA	Intergenic	Intergenic	13899	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
21929	chr1	207856701	207856900	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-34097	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
25921	chr10	11320651	11320750	+	0	NA	intron (NR_126062, intron 2 of 2)	intron (NR_126062, intron 2 of 2)	23974	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
70301	chr14	101792021	101792950	+	0	NA	intron (NM_001352914, intron 3 of 14)	L1MC5a|LINE|L1	-17350	NM_001352916	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
223624	chr8	144323351	144323600	+	0	NA	intron (NM_012079, intron 1 of 16)	intron (NM_012079, intron 1 of 16)	3377	NM_012079	8694		NM_012079	ENSG00000185000	DGAT1	ARAT|ARGP1|DGAT|DIAR7	diacylglycerol O-acyltransferase 1	protein-coding
95634	chr17	37745271	37746180	+	0	NA	promoter-TSS (NM_001304286).2	promoter-TSS (NM_001304286).2	-666	NM_000458	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
139062	chr2	218850871	218851430	+	0	NA	Intergenic	Intergenic	-8655	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
233973	chrX	2698941	2699450	+	0	NA	intron (NR_135623, intron 1 of 10)	AluSg|SINE|Alu	7900	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
52001	chr12	53969521	53969850	+	0	NA	promoter-TSS (NR_047518)	promoter-TSS (NR_047518)	-771	NR_047518	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
36831	chr11	9972901	9973150	+	0	NA	intron (NM_030962, intron 13 of 39)	intron (NM_030962, intron 13 of 39)	133883	NR_120539	101928008		NR_120539	ENSG00000255476	LOC101928008	-	uncharacterized LOC101928008	ncRNA
43273	chr11	75723201	75723480	+	0	NA	intron (NM_025098, intron 2 of 5)	intron (NM_025098, intron 2 of 5)	5502	NM_025098	80168		NM_025098	ENSG00000166391	MOGAT2	DGAT2L5|DGAT2L5.|MGAT2|hDC5	monoacylglycerol O-acyltransferase 2	protein-coding
120593	chr19	45013771	45014130	+	0	NA	intron (NM_006509, intron 3 of 10)	L1MC4|LINE|L1	12486	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
158157	chr22	50196051	50196500	+	0	NA	intron (NM_001378762, intron 5 of 9)	MER77|LTR|ERVL	-4736	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
106913	chr18	26092521	26092950	+	0	NA	Intergenic	Intergenic	-1518	NM_001308201	6760		NM_005637	ENSG00000141380	SS18	SMARCL1|SSXT|SYT	SS18 subunit of BAF chromatin remodeling complex	protein-coding
121696	chr19	47570971	47571130	+	0	NA	intron (NM_001277075, intron 2 of 16)	intron (NM_001277075, intron 2 of 16)	2098	NM_001277075	84215		NM_032255	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
190238	chr5	178473871	178474030	+	0	NA	intron (NM_173465, intron 2 of 28)	intron (NM_173465, intron 2 of 28)	116443	NM_173465	91522		NM_173465	ENSG00000050767	COL23A1	-	collagen type XXIII alpha 1 chain	protein-coding
234826	chrX	24171951	24172250	+	0	NA	intron (NM_001178085, intron 4 of 10)	intron (NM_001178085, intron 4 of 10)	22371	NM_001178085	7543		NM_003410	ENSG00000005889	ZFX	MRXS37|ZNF926	zinc finger protein X-linked	protein-coding
45680	chr11	119044451	119045800	+	0	NA	3' UTR (NM_001130991, exon 26 of 26).2	3' UTR (NM_001130991, exon 26 of 26).2	12080	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
140967	chr2	237927201	237927400	+	0	NA	Intergenic	Tigger18a|DNA|TcMar-Tigger	-39645	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
6570	chr1	28744171	28744850	+	0	NA	intron (NM_016258, intron 4 of 4)	intron (NM_016258, intron 4 of 4)	7570	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
213921	chr7	142581001	142581600	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-84999	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
136528	chr2	177260251	177260600	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	3706	NM_001313900	4780		NM_006164	ENSG00000116044	NFE2L2	HEBP1|IMDDHH|NRF2|Nrf-2	NFE2 like bZIP transcription factor 2	protein-coding
221190	chr8	120734551	120735450	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	-26253	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
106282	chr18	12702121	12704100	+	0	NA	promoter-TSS (NM_020232)	promoter-TSS (NM_020232)	68	NM_020232	56984		NM_020232	ENSG00000128789	PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|PRAAS4|TNFSF5IP1	proteasome assembly chaperone 2	protein-coding
56866	chr12	120283571	120283730	+	0	NA	Intergenic	MIRb|SINE|MIR	-8130	NM_001385735	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
114244	chr19	11507051	11507150	+	0	NA	intron (NM_001243204, intron 7 of 7)	intron (NM_001243204, intron 7 of 7)	-1261	NM_138783	115950		NM_138783	ENSG00000161914	ZNF653	E430039K05Rik|ZIP67	zinc finger protein 653	protein-coding
223723	chr8	144464701	144466600	+	0	NA	promoter-TSS (NM_001369769)	promoter-TSS (NM_001369769)	51	NM_001129888	84773		NM_032687	ENSG00000291317	TMEM276	-	transmembrane protein 276	protein-coding
37868	chr11	33807651	33807750	+	0	NA	Intergenic	LOR1b|LTR|ERV1	33001	NR_120550	101928440		NR_120550	ENSG00000254508	FBXO3-DT	FBXO3-AS1	FBXO3 divergent transcript	ncRNA
98373	chr17	46414651	46414930	+	0	NA	intron (NR_033799, intron 4 of 6)	intron (NR_033799, intron 4 of 6)	41977	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
74072	chr15	52651901	52652600	+	0	NA	promoter-TSS (NM_001286495)	promoter-TSS (NM_001286495)	-210	NR_169552	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
149326	chr21	29043901	29044100	+	0	NA	intron (NM_006447, intron 13 of 17)	AluSz|SINE|Alu	19332	NM_006447	10600		NM_006447	ENSG00000156256	USP16	UBP-M|UBPM	ubiquitin specific peptidase 16	protein-coding
121940	chr19	48462271	48462680	+	0	NA	intron (NM_013348, intron 2 of 2)	CpG	-6733	NM_017457	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
229013	chr9	113687871	113688030	+	0	NA	Intergenic	CpG	93821	NM_001276262	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
169119	chr3	155842771	155843550	+	0	NA	intron (NM_001190992, intron 1 of 6)	intron (NM_001190992, intron 1 of 6)	11246	NM_001363883	9197		NM_004733	ENSG00000169359	SLC33A1	ACATN|AT-1|AT1|CCHLND|HPBDS|SPG42	solute carrier family 33 member 1	protein-coding
881	chr1	1641171	1641330	+	0	NA	intron (NM_033490, intron 8 of 18)	AluSx|SINE|Alu	8470	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
98425	chr17	46773121	46773850	+	0	NA	intron (NM_030753, intron 2 of 4)	intron (NM_030753, intron 2 of 4)	45207	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
214047	chr7	143371821	143372950	+	0	NA	intron (NM_001371250, intron 1 of 6)	L2a|LINE|L2	8640	NR_161353	100507507		NR_161353		FAM131B-AS2	-	FAM131B antisense RNA 2	ncRNA
191094	chr6	3753101	3753480	+	0	NA	Intergenic	LTR45|LTR|ERV1	-1577	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
216502	chr8	20251701	20252730	+	0	NA	intron (NM_021020, intron 3 of 3)	(GTGT)n|Simple_repeat|Simple_repeat	21320	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
37161	chr11	13791571	13791730	+	0	NA	intron (NR_149108, intron 3 of 3)	MLT1A0|LTR|ERVL-MaLR	7264	NR_149108	105376562		NR_149108	ENSG00000255411	LINC02548	-	long intergenic non-protein coding RNA 2548	ncRNA
86110	chr16	57659571	57659730	+	0	NA	exon (NM_001290144, exon 11 of 14)	exon (NM_001290144, exon 11 of 14)	-8656	NM_170776	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
126264	chr2	27133651	27135600	+	0	NA	promoter-TSS (NR_138479)	promoter-TSS (NR_138479)	11	NM_013388	10113		NM_013388	ENSG00000138073	PREB	SEC12	prolactin regulatory element binding	protein-coding
152966	chr22	23066821	23067600	+	0	NA	intron (NM_014433, intron 4 of 6)	intron (NM_014433, intron 4 of 6)	-3309	NM_002073	2781		NM_002073	ENSG00000128266	GNAZ	HG1H|gz-alpha	G protein subunit alpha z	protein-coding
195265	chr6	36444001	36444830	+	0	NA	intron (NR_104481, intron 1 of 3)	intron (NR_104481, intron 1 of 3)	1415	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
57136	chr12	121226651	121227250	+	0	NA	intron (NR_046373, intron 4 of 10)	AluSx|SINE|Alu	16821	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
109967	chr19	1391701	1391900	+	0	NA	intron (NM_001363602, intron 6 of 7)	intron (NM_001363602, intron 6 of 7)	7893	NM_001363602	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
8785	chr1	42913351	42913880	+	0	NA	Intergenic	Intergenic	45253	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
90887	chr17	2389601	2391250	+	0	NA	intron (NM_020310, intron 4 of 5)	MER1B|DNA|hAT-Charlie	10635	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
88004	chr16	80924501	80924730	+	0	NA	Intergenic	Intergenic	-32019	NR_131947	100996425		NR_131947	ENSG00000260896	ARLNC1	LINC02170|PRCAT47	androgen receptor regulated long noncoding RNA 1	ncRNA
145451	chr20	43589101	43589500	+	0	NA	Intergenic	Intergenic	-1637	NM_016004	51098		NM_016004	ENSG00000101052	IFT52	C20orf9|CGI-53|NGD2|NGD5	intraflagellar transport 52	protein-coding
14043	chr1	120750401	120751000	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	26761	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
15938	chr1	151823621	151823880	+	0	NA	intron (NM_005060, intron 2 of 10)	AluJr|SINE|Alu	2346	NM_001001523	6097		NM_005060	ENSG00000143365	RORC	IMD42|NR1F3|RORG|RZR-GAMMA|RZRG|TOR	RAR related orphan receptor C	protein-coding
7608	chr1	35352251	35352350	+	0	NA	intron (NM_001350140, intron 3 of 27)	(CA)n|Simple_repeat|Simple_repeat	13777	NR_046659	100861513		NR_046659	ENSG00000227409	ZMYM4-AS1	-	ZMYM4 antisense RNA 1	ncRNA
229319	chr9	120889951	120891000	+	0	NA	intron (NM_001286840, intron 1 of 14)	intron (NM_001286840, intron 1 of 14)	4421	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
235952	chrX	53321181	53322080	+	0	NA	promoter-TSS (NM_001111125)	promoter-TSS (NM_001111125)	-280	NM_001111125	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
198397	chr6	105781501	105782230	+	0	NA	Intergenic	Intergenic	-304471	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
44910	chr11	115219351	115219650	+	0	NA	intron (NM_001301043, intron 5 of 11)	intron (NM_001301043, intron 5 of 11)	-114077	NR_135108	105369509		NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
89540	chr16	89197271	89197680	+	0	NA	intron (NM_001384773, intron 7 of 8)	intron (NM_001384773, intron 7 of 8)	3062	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
175814	chr4	77854351	77855530	+	0	NA	Intergenic	Intergenic	-7890	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
214229	chr7	148857151	148857250	+	0	NA	intron (NM_001203248, intron 1 of 19)	L1MC3|LINE|L1	26285	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
172483	chr4	2178421	2178500	+	0	NA	intron (NM_181808, intron 8 of 25)	intron (NM_181808, intron 8 of 25)	63661	NM_001303143	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
9879	chr1	54331601	54332000	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	74594	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
59013	chr13	20177251	20177900	+	0	NA	Intergenic	CpG	15363	NM_004004	2706		NM_004004	ENSG00000165474	GJB2	BAPS|CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein beta 2	protein-coding
15289	chr1	149832351	149833340	+	0	NA	non-coding (NR_168447, exon 1 of 2)	non-coding (NR_168447, exon 1 of 2)	188	NR_168446	554313		NM_001034077	ENSG00000270276	H4C15	H4-16|H4/o|H4C1|H4C11|H4C12|H4C13|H4C14|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|HIST2H4B	H4 clustered histone 15	protein-coding
11281	chr1	89128701	89129630	+	0	NA	Intergenic	Intergenic	-3051	NM_004120	2634		NM_004120	ENSG00000162645	GBP2	-	guanylate binding protein 2	protein-coding
112918	chr19	7651351	7651450	+	0	NA	Intergenic	AluSz6|SINE|Alu	14290	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
206312	chr7	30178771	30179330	+	0	NA	Intergenic	Intergenic	44064	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
152998	chr22	23178271	23178950	+	0	NA	Intergenic	Intergenic	-1899	NM_004327	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
99779	chr17	51123021	51123480	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-2382	NM_001130528	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
7747	chr1	36159351	36160330	+	0	NA	intron (NM_001286365, intron 1 of 15)	intron (NM_001286365, intron 1 of 15)	3680	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
95353	chr17	35839001	35839280	+	0	NA	intron (NM_139215, intron 11 of 15).2	AluJb|SINE|Alu	29656	NM_003487	8148		NM_003487	ENSG00000270647	TAF15	Npl3|RBP56|TAF2N|TAFII68	TATA-box binding protein associated factor 15	protein-coding
133372	chr2	118003201	118003800	+	0	NA	intron (NM_019044, intron 3 of 23)	intron (NM_019044, intron 3 of 23)	10570	NM_019044	54520		NM_019044	ENSG00000125633	CCDC93	-	coiled-coil domain containing 93	protein-coding
128572	chr2	60902751	60903050	+	0	NA	intron (NM_001291746, intron 4 of 9)	L1ME4b|LINE|L1	21326	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
102571	chr17	75864271	75865480	+	0	NA	Intergenic	Intergenic	-8439	NM_001348170	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
235602	chrX	47644521	47645000	+	0	NA	intron (NM_005229, intron 1 of 5)	L2a|LINE|L2	5844	NM_001114123	2002		NM_005229	ENSG00000126767	ELK1	-	ETS transcription factor ELK1	protein-coding
178690	chr4	152533771	152533930	+	0	NA	intron (NM_001349798, intron 2 of 13)	X7B_LINE|LINE|CR1	1183	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
212070	chr7	115008471	115009530	+	0	NA	intron (NM_199072, intron 4 of 4)	intron (NM_199072, intron 4 of 4)	-69958	NR_120521	102724386		NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
65783	chr14	54509171	54510750	+	0	NA	promoter-TSS (NM_006568)	promoter-TSS (NM_006568)	54	NM_006568	10668		NM_006568	ENSG00000100532	CGRRF1	CGR19|RNF197	cell growth regulator with ring finger domain 1	protein-coding
49055	chr12	14400651	14401280	+	0	NA	intron (NM_181352, intron 1 of 14)	L1M5|LINE|L1	15684	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
64468	chr14	24264571	24265230	+	0	NA	TTS (NM_004581).2	TTS (NM_004581).2	-1723	NM_000359	7051		NM_000359	ENSG00000092295	TGM1	ARCI1|ICR2|KTG|LI|LI1|TGASE|TGK	transglutaminase 1	protein-coding
93499	chr17	18986821	18987080	+	0	NA	intron (NM_001039999, intron 3 of 5)	intron (NM_001039999, intron 3 of 5)	17814	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
155450	chr22	38471371	38471530	+	0	NA	intron (NM_006855, intron 1 of 4)	intron (NM_006855, intron 1 of 4)	3354	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
64100	chr14	22766121	22767200	+	0	NA	promoter-TSS (NM_005015)	promoter-TSS (NM_005015)	-28	NM_005015	5018		NM_005015	ENSG00000155463	OXA1L	OXA1|OXA1L1	OXA1L mitochondrial inner membrane protein	protein-coding
180911	chr5	34195851	34196500	+	0	NA	intron (NR_146599, intron 2 of 11)	AluSz6|SINE|Alu	6594	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
105254	chr17	82432851	82433150	+	0	NA	intron (NM_001369487, intron 5 of 14)	AluY|SINE|Alu	-14414	NM_024648	79701		NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron dependent oxygenase domain containing 3	protein-coding
123649	chr19	54739801	54740200	+	0	NA	intron (NM_001291700, intron 2 of 5).28	intron (NM_001291700, intron 2 of 5).28	1454	NM_001360171	102725023		NM_001360171		LOC102725023	KIR2DS3	killer cell immunoglobulin-like receptor 2DS3-like	protein-coding
210843	chr7	101018621	101019600	+	0	NA	promoter-TSS (NM_001040105)	promoter-TSS (NM_001040105)	-971	NR_133665	140453		NM_001004430	ENSG00000169876	MUC17	MUC-17|MUC-3|MUC3	mucin 17, cell surface associated	protein-coding
17175	chr1	156224671	156225800	+	0	NA	intron (NM_001199664, intron 1 of 4)	intron (NM_001199664, intron 1 of 4)	12247	NM_001199653	11243		NM_007221	ENSG00000160783	PMF1	-	polyamine modulated factor 1	protein-coding
51984	chr12	53955651	53955750	+	0	NA	intron (NM_173860, intron 1 of 1)	intron (NM_173860, intron 1 of 1)	797	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
167894	chr3	136144501	136144830	+	0	NA	intron (NM_002718, intron 13 of 13)	AluSx|SINE|Alu	49803	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
10943	chr1	84158951	84159050	+	0	NA	intron (NM_182948, intron 1 of 9)	L1MB8|LINE|L1	-5184	NM_001242857	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
187612	chr5	142965051	142965900	+	0	NA	intron (NR_146198, intron 11 of 22)	LTR13|LTR|ERVK	-96565	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
160088	chr3	18791721	18792030	+	0	NA	Intergenic	Intergenic	-346283	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
178946	chr4	159098751	159099300	+	0	NA	Intergenic	Intergenic	-5026	NM_001351724	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
119476	chr19	40440771	40441230	+	0	NA	3' UTR (NM_013368, exon 2 of 2)	3' UTR (NM_013368, exon 2 of 2)	1598	NM_013368	29946		NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding
40010	chr11	62651301	62651500	+	0	NA	intron (NM_030628, intron 1 of 1)	AluY|SINE|Alu	1902	NM_030628	80789		NM_030628	ENSG00000185085	INTS5	INT5|KIAA1698	integrator complex subunit 5	protein-coding
29320	chr10	69362321	69362800	+	0	NA	intron (NM_033498, intron 6 of 20)	intron (NM_033498, intron 6 of 20)	43713	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
84217	chr16	29927321	29927580	+	0	NA	Intergenic	MER90a|LTR|ERV1	-1224	NR_110933	253980		NM_178863	ENSG00000174943	KCTD13	BACURD1|FKSG86|PDIP1|POLDIP1|hBACURD1	potassium channel tetramerization domain containing 13	protein-coding
65128	chr14	44961021	44963080	+	0	NA	promoter-TSS (NM_001308112)	promoter-TSS (NM_001308112)	-103	NM_017658	54813		NM_017658	ENSG00000179454	KLHL28	BTBD5	kelch like family member 28	protein-coding
135059	chr2	156431421	156432080	+	0	NA	Intergenic	Intergenic	-3802	NM_001083112	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
205057	chr7	6598351	6598850	+	0	NA	intron (NM_001303039, intron 3 of 6)	intron (NM_001303039, intron 3 of 6)	8579	NM_001303039	79034		NM_024067	ENSG00000146576	INTS15	C7orf26	integrator complex subunit 15	protein-coding
225581	chr9	36092171	36093100	+	0	NA	intron (NM_021111, intron 10 of 20)	AluSx1|SINE|Alu	-43901	NR_104638	152007		NM_022343	ENSG00000122694	GLIPR2	C9orf19|GAPR-1|GAPR1	GLI pathogenesis related 2	protein-coding
161390	chr3	41206621	41206950	+	0	NA	intron (NM_001098210, intron 1 of 15)	intron (NM_001098210, intron 1 of 15)	7280	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
79028	chr16	67271	67430	+	0	NA	intron (NM_022450, intron 1 of 17)	intron (NM_022450, intron 1 of 17)	5281	NM_022450	64285		NM_022450	ENSG00000007384	RHBDF1	C16orf8|Dist1|EGFR-RS|gene-89|gene-90|hDist1	rhomboid 5 homolog 1	protein-coding
115628	chr19	16093551	16094000	+	0	NA	intron (NM_001367836, intron 8 of 8)	intron (NM_001367836, intron 8 of 8)	16759	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
76669	chr15	75696221	75696480	+	0	NA	intron (NM_001897, intron 1 of 9)	intron (NM_001897, intron 1 of 9)	16498	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
65821	chr14	54885521	54886130	+	0	NA	intron (NM_001024024, intron 1 of 6)	AluSx|SINE|Alu	-7632	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
23763	chr1	232925451	232925850	+	0	NA	Intergenic	Intergenic	-24961	NR_138025	84284		NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase|THEP1	nucleoside-triphosphatase, cancer-related	protein-coding
61829	chr13	75802971	75803330	+	0	NA	intron (NM_001330583, intron 5 of 28)	intron (NM_001330583, intron 5 of 28)	42489	NM_015842	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
128465	chr2	55695951	55696280	+	0	NA	Intergenic	AluYb8|SINE|Alu	-2271	NM_033109	87178		NM_033109	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|SCA25|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
121668	chr19	47499521	47499780	+	0	NA	intron (NR_038457, intron 1 of 8)	intron (NR_038457, intron 1 of 8)	15368	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
182962	chr5	71450401	71450600	+	0	NA	Intergenic	Intergenic	-3744	NR_134269	102724392		NR_134268		LINC02197	-	long intergenic non-protein coding RNA 2197	ncRNA
119765	chr19	41293501	41293700	+	0	NA	intron (NM_144732, intron 8 of 14)	intron (NM_144732, intron 8 of 14)	-16572	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
149415	chr21	31189001	31189400	+	0	NA	intron (NM_001353694, intron 13 of 27)	AluSz|SINE|Alu	-28260	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
215216	chr7	156002771	156003130	+	0	NA	Intergenic	Intergenic	40393	NR_168379	389602		NM_001291913	ENSG00000204876	LOC389602	-	uncharacterized LOC389602	ncRNA
66719	chr14	64445151	64445850	+	0	NA	intron (NM_001364837, intron 22 of 26)	intron (NM_001364837, intron 22 of 26)	-19999	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
17416	chr1	156648521	156649300	+	0	NA	intron (NM_198427, intron 6 of 7)	intron (NM_198427, intron 6 of 7)	6793	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
230718	chr9	128809001	128809200	+	0	NA	3' UTR (NM_001286772, exon 10 of 10)	3' UTR (NM_001286772, exon 10 of 10)	-9400	NM_004435	2021		NM_004435	ENSG00000167136	ENDOG	-	endonuclease G	protein-coding
173338	chr4	7724271	7724830	+	0	NA	intron (NM_020777, intron 19 of 26)	(TGG)n|Simple_repeat|Simple_repeat	-29540	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
203143	chr6	166954771	166955600	+	0	NA	intron (NM_003730, intron 1 of 8)	(CACA)n|Simple_repeat|Simple_repeat	1365	NM_003730	8635		NM_003730	ENSG00000026297	RNASET2	RNASE6PL|bA514O12.3	ribonuclease T2	protein-coding
16213	chr1	153888421	153889080	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	34222	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
198073	chr6	90237301	90237900	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	59243	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
93563	chr17	19088121	19088380	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1193	NR_164158	102724624		NR_164158		LOC102724624	-	uncharacterized protein ENSP00000382042-like	ncRNA
149688	chr21	33936201	33937200	+	0	NA	intron (NR_038883, intron 1 of 2)	intron (NR_038883, intron 1 of 2)	5486	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
129853	chr2	72921471	72921630	+	0	NA	intron (NM_004097, intron 1 of 2)	intron (NM_004097, intron 1 of 2)	4031	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
54314	chr12	89514671	89515150	+	0	NA	intron (NM_172240, intron 2 of 11)	L2b|LINE|L2	9886	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
128776	chr2	62216971	62218000	+	0	NA	intron (NM_001319075, intron 1 of 1)	intron (NM_001319075, intron 1 of 1)	1964	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
214172	chr7	144830001	144830700	+	0	NA	intron (NR_146934, intron 1 of 6)	MER1A|DNA|hAT-Charlie	5590	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
176989	chr4	105145201	105147050	+	0	NA	promoter-TSS (NM_001127208)	promoter-TSS (NM_001127208)	250	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
183354	chr5	77041971	77042350	+	0	NA	intron (NM_018046, intron 5 of 13)	SVA_F|Retroposon|SVA	11756	NM_018046	55109		NM_013303	ENSG00000164252	AGGF1	GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q	angiogenic factor with G-patch and FHA domains 1	protein-coding
19344	chr1	173843351	173843450	+	0	NA	intron (NM_018122, intron 11 of 16)	AluSx3|SINE|Alu	18727	NM_001365213	55157		NM_018122	ENSG00000117593	DARS2	ASPRS|LBSL|MT-ASPRS|mtAspRS	aspartyl-tRNA synthetase 2, mitochondrial	protein-coding
147785	chr20	62605801	62606000	+	0	NA	Intergenic	Intergenic	-36603	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
100415	chr17	60569701	60570150	+	0	NA	intron (NR_126009, intron 2 of 3)	intron (NR_126009, intron 2 of 3)	5379	NR_126009	388406		NR_126009	ENSG00000267772	LINC01999	-	long intergenic non-protein coding RNA 1999	ncRNA
139236	chr2	219313351	219313730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-4139	NM_001199763	5798		NM_002846	ENSG00000054356	PTPRN	IA-2|IA-2/PTP|IA2|ICA512|R-PTP-N	protein tyrosine phosphatase receptor type N	protein-coding
138926	chr2	218221051	218221650	+	0	NA	intron (NM_152862, intron 2 of 10)	intron (NM_152862, intron 2 of 10)	3953	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
2859	chr1	11284871	11285430	+	0	NA	intron (NM_001330350, intron 1 of 1)	intron (NM_001330350, intron 1 of 1)	11952	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
179964	chr5	840571	840930	+	0	NA	intron (NM_024786, intron 4 of 12)	intron (NM_024786, intron 4 of 12)	10236	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
86047	chr16	57567671	57568430	+	0	NA	exon (NM_001304376, exon 9 of 12)	exon (NM_001304376, exon 9 of 12)	25407	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
70609	chr14	102795071	102795900	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	18006	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
91334	chr17	4435621	4435900	+	0	NA	intron (NM_001320449, intron 1 of 10)	(TCAC)n|Simple_repeat|Simple_repeat	1820	NM_182538	201305		NM_182538	ENSG00000182557	SPNS3	SLC62A3|SLC63A3	SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)	protein-coding
163435	chr3	50585501	50585900	+	0	NA	TTS (NM_001317851)	TTS (NM_001317851)	-14673	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
67511	chr14	70970501	70970900	+	0	NA	intron (NM_014982, intron 5 of 35)	MER58A|DNA|hAT-Charlie	63241	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
72914	chr15	40365951	40366250	+	0	NA	intron (NM_033510, intron 7 of 7)	intron (NM_033510, intron 7 of 7)	7881	NM_033510	85455		NM_033510	ENSG00000140323	DISP2	C15orf36|DISPB|HsT16908|LINC00594	dispatched RND transporter family member 2	protein-coding
184780	chr5	110753001	110753200	+	0	NA	intron (NM_001303249, intron 5 of 7)	L2b|LINE|L2	14093	NM_138773	91137		NM_138773	ENSG00000164209	SLC25A46	HMSN6B|PCH1E	solute carrier family 25 member 46	protein-coding
31451	chr10	96017251	96017630	+	0	NA	intron (NM_001159747, intron 7 of 11)	intron (NM_001159747, intron 7 of 11)	17673	NM_001159747	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
35459	chr11	1462521	1462950	+	0	NA	TTS (NM_003957)	TTS (NM_003957)	18151	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
196632	chr6	44273801	44274000	+	0	NA	intron (NM_001137560, intron 2 of 2)	intron (NM_001137560, intron 2 of 2)	3450	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
161529	chr3	42608701	42609330	+	0	NA	intron (NM_001349126, intron 2 of 18)	AluSz|SINE|Alu	-7937	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
117668	chr19	24046671	24046900	+	0	NA	intron (NM_001278663, intron 2 of 2)	intron (NM_001278663, intron 2 of 2)	13336	NM_001278663	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
103993	chr17	80039221	80039680	+	0	NA	intron (NM_001330508, intron 2 of 10)	AluSc|SINE|Alu	2808	NM_017950	55036		NM_017950	ENSG00000141519	CCDC40	CFAP172|CILD15|FAP172	coiled-coil domain 40 molecular ruler complex subunit	protein-coding
100688	chr17	63823371	63824100	+	0	NA	intron (NM_017647, intron 13 of 20)	intron (NM_017647, intron 13 of 20)	-3696	NM_002805	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
41380	chr11	65995821	65996530	+	0	NA	TTS (NM_001242486)	TTS (NM_001242486)	-5904	NM_001143985	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
157134	chr22	42792871	42793630	+	0	NA	Intergenic	Intergenic	64023	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
29579	chr10	71710401	71711630	+	0	NA	TTS (NM_001168390)	TTS (NM_001168390)	8763	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
33393	chr10	117663771	117663950	+	0	NA	Intergenic	Charlie29a|DNA|hAT-Charlie	-118792	NR_002791	196047		NR_002791	ENSG00000229847	EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
192145	chr6	16837451	16838080	+	0	NA	Intergenic	Intergenic	-76275	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
39725	chr11	61777141	61779750	+	0	NA	exon (NM_001127392, exon 14 of 27)	exon (NM_001127392, exon 14 of 27)	14116	NR_030342	693196		NR_030342	ENSG00000284108	MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
120020	chr19	41943621	41944590	+	0	NA	Intergenic	AluSx1|SINE|Alu	15216	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
175257	chr4	65935451	65935550	+	0	NA	Intergenic	Intergenic	-265005	NM_001281766	2044		NM_004439	ENSG00000145242	EPHA5	CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4	EPH receptor A5	protein-coding
143248	chr20	25053721	25054430	+	0	NA	intron (NM_001252675, intron 1 of 13)	intron (NM_001252675, intron 1 of 13)	4064	NM_032501	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
82075	chr16	14186001	14186200	+	0	NA	promoter-TSS (NM_001365411)	promoter-TSS (NM_001365411)	-586	NM_001365414	57496		NM_014048	ENSG00000186260	MRTFB	MKL2|MRTF-B|NPD001	myocardin related transcription factor B	protein-coding
102419	chr17	75631451	75631750	+	0	NA	exon (NM_004259, exon 9 of 20)	exon (NM_004259, exon 9 of 20)	-1834	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
232417	chr9	136087171	136087730	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	7839	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
38479	chr11	45843121	45843980	+	0	NA	Intergenic	Intergenic	-3568	NM_001127457	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
154580	chr22	36271371	36271530	+	0	NA	Intergenic	L1P3|LINE|L1	15457	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
124275	chr19	57810951	57811350	+	0	NA	intron (NM_024762, intron 2 of 2)	LTR5_Hs|LTR|ERVK	3763	NM_024762	79818		NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
115386	chr19	15257101	15257300	+	0	NA	intron (NM_001379291, intron 7 of 19)	intron (NM_001379291, intron 7 of 19)	23251	NM_014299	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
55240	chr12	101874901	101875100	+	0	NA	Intergenic	AluSx|SINE|Alu	-2580	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
48164	chr12	7955071	7955230	+	0	NA	Intergenic	AluSp|SINE|Alu	-18963	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
49238	chr12	19402901	19403300	+	0	NA	Intergenic	L1PBb|LINE|L1	-36392	NM_153207	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
190092	chr5	177814801	177815000	+	0	NA	Intergenic	Intergenic	-5393	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
52363	chr12	55648251	55648350	+	0	NA	Intergenic	SVA_B|Retroposon|SVA	11408	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
50806	chr12	49066421	49066680	+	0	NA	intron (NM_144593, intron 4 of 7)	intron (NM_144593, intron 4 of 7)	3429	NM_144593	121268		NM_144593	ENSG00000167550	RHEBL1	RHEBL1c	RHEB like 1	protein-coding
117696	chr19	28500821	28501480	+	0	NA	intron (NR_110759, intron 5 of 9)	intron (NR_110759, intron 5 of 9)	-105538	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
157616	chr22	46052021	46052280	+	0	NA	intron (NR_165243, intron 1 of 1)	MIR|SINE|MIR	-1696	NR_027034	150381		NR_027034		PRR34-AS1	-	PRR34 antisense RNA 1	ncRNA
176548	chr4	98446371	98448100	+	0	NA	Intergenic	AluJo|SINE|Alu	185851	NM_001100428	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
235819	chrX	49268551	49270680	+	0	NA	promoter-TSS (NM_033215)	promoter-TSS (NM_033215)	-178	NM_001184745	89801		NM_033215	ENSG00000049769	PPP1R3F	HB2E|LL0XNC01-7P3.1|R3F	protein phosphatase 1 regulatory subunit 3F	protein-coding
105817	chr18	2962971	2963530	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	-16627	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
30430	chr10	79046871	79047380	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	20323	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
3377	chr1	15685951	15686780	+	0	NA	intron (NM_015164, intron 1 of 19)	MIR|SINE|MIR	2045	NM_015164	23207		NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology and RUN domain containing M2	protein-coding
217190	chr8	26320721	26321750	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	28019	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
60267	chr13	40605221	40605680	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	61191	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
154669	chr22	36356201	36356400	+	0	NA	intron (NM_002473, intron 1 of 40)	AluSx|SINE|Alu	31667	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
70063	chr14	100142151	100142500	+	0	NA	intron (NM_016337, intron 13 of 13)	intron (NM_016337, intron 13 of 13)	17320	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
171770	chr4	51151	52250	+	0	NA	Intergenic	Intergenic	-1585	NM_001286054	152687		NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding
39917	chr11	62521101	62521300	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	24464	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
49989	chr12	42213101	42213300	+	0	NA	intron (NR_135140, intron 2 of 6)	MLT1F2|LTR|ERVL-MaLR	25048	NM_005748	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
144581	chr20	35781101	35781300	+	0	NA	intron (NM_016436, intron 1 of 17)	AluSg|SINE|Alu	9185	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
44635	chr11	110092721	110093550	+	0	NA	promoter-TSS (NM_033390)	promoter-TSS (NM_033390)	-257	NM_033390	85463		NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
88192	chr16	81750351	81750930	+	0	NA	Intergenic	L1MA6|LINE|L1	-28651	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
76361	chr15	74587901	74588300	+	0	NA	intron (NM_006465, intron 4 of 8)	AluJr|SINE|Alu	-20272	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
3949	chr1	18632551	18633050	+	0	NA	intron (NM_001135254, intron 1 of 8)	CpG	1954	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
190149	chr5	178113001	178114200	+	0	NA	promoter-TSS (NM_015111)	promoter-TSS (NM_015111)	68	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
68244	chr14	76976271	76976980	+	0	NA	Intergenic	Intergenic	16987	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
198379	chr6	105484551	105485450	+	0	NA	Intergenic	Intergenic	-81918	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
141269	chr2	239953951	239954250	+	0	NA	intron (NR_136158, intron 7 of 10)	intron (NR_136158, intron 7 of 10)	-11006	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
80418	chr16	2621651	2621950	+	0	NA	intron (NR_015441, intron 3 of 3)	intron (NR_015441, intron 3 of 3)	-17182	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
187809	chr5	146533071	146533600	+	0	NA	Intergenic	Intergenic	-17145	NM_194251	134391		NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|GPCR-2037|PGR7	G protein-coupled receptor 151	protein-coding
22233	chr1	212602971	212603130	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	-5711	NM_001674	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
15547	chr1	150540421	150540880	+	0	NA	Intergenic	AluSc|SINE|Alu	-8758	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
224451	chr9	15431051	15431350	+	0	NA	intron (NR_161434, intron 2 of 8)	LTR41|LTR|ERVL	8324	NR_161450	6619		NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
214404	chr7	149799571	149800130	+	0	NA	non-coding (NR_163594, exon 47 of 103)	non-coding (NR_163594, exon 47 of 103)	23808	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
77338	chr15	82531821	82532080	+	0	NA	Intergenic	Intergenic	8507	NM_001021	6218		NM_001021	ENSG00000182774	RPS17	DBA4|RPS17L|RPS17L1|RPS17L2|S17|eS17	ribosomal protein S17	protein-coding
21205	chr1	204075171	204075330	+	0	NA	intron (NM_005686, intron 1 of 13)	CpG	2135	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
84709	chr16	30873351	30873950	+	0	NA	intron (NM_001286526, intron 5 of 5)	AluSz|SINE|Alu	1673	NR_039744	100616231		NR_039744	ENSG00000265991	MIR4519	-	microRNA 4519	ncRNA
117940	chr19	33184121	33184730	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-9905	NM_002333	4037		NM_002333	ENSG00000130881	LRP3	-	LDL receptor related protein 3	protein-coding
203392	chr6	170583671	170585230	+	0	NA	exon (NM_144781, exon 1 of 3)	exon (NM_144781, exon 1 of 3)	187	NM_002598	5134		NM_002598	ENSG00000071994	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
232591	chr9	136407551	136408380	+	0	NA	intron (NM_001039708, intron 1 of 7)	intron (NM_001039708, intron 1 of 7)	-2608	NM_001282944	23203		NM_015160	ENSG00000165688	PMPCA	Alpha-MPP|CLA1|CPD3|INPP5E|MAS2|P-55|SCAR2	peptidase, mitochondrial processing subunit alpha	protein-coding
168456	chr3	142999901	143000100	+	0	NA	TTS (NR_034032)	TTS (NR_034032)	1467	NR_034032	100289361		NR_034032	ENSG00000268129	LOC100289361	-	uncharacterized LOC100289361	ncRNA
216706	chr8	22236871	22237700	+	0	NA	Intergenic	L2a|LINE|L2	-4933	NM_001363312	9796		NM_014759	ENSG00000168490	PHYHIP	DYRK1AP3|PAHX-AP|PAHXAP1	phytanoyl-CoA 2-hydroxylase interacting protein	protein-coding
119839	chr19	41376221	41377500	+	0	NA	promoter-TSS (NM_001042595)	promoter-TSS (NM_001042595)	327	NM_001098822	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
74963	chr15	63825001	63825280	+	0	NA	intron (NM_003922, intron 1 of 77)	AluSz6|SINE|Alu	8808	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
91653	chr17	5502521	5503130	+	0	NA	intron (NM_001033053, intron 15 of 15)	intron (NM_001033053, intron 15 of 15)	-1819	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
27030	chr10	26857121	26857950	+	0	NA	intron (NM_001178116, intron 1 of 11)	AluJb|SINE|Alu	3423	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
40147	chr11	62849701	62849980	+	0	NA	Intergenic	Intergenic	3195	NR_000008	9304		NR_000008	ENSG00000277194	SNORD22	RNU22|U22	small nucleolar RNA, C/D box 22	snoRNA
197225	chr6	67433301	67433500	+	0	NA	Intergenic	Intergenic	-621951	NR_125869	102723883		NR_125869	ENSG00000223504	LOC102723883	-	uncharacterized LOC102723883	ncRNA
237460	chrX	119754951	119755600	+	0	NA	Intergenic	Intergenic	-3313	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
121647	chr19	47481771	47481930	+	0	NA	intron (NR_111923, intron 4 of 12)	intron (NR_111923, intron 4 of 12)	2369	NR_111923	11133		NM_007059	ENSG00000118162	KPTN	2E4|KICS4|MRT41	kaptin, actin binding protein	protein-coding
38600	chr11	46305101	46305650	+	0	NA	intron (NM_052854, intron 2 of 11)	L2c|LINE|L2	-27551	NM_201532	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
40349	chr11	63954321	63954580	+	0	NA	exon (NM_001300800, exon 8 of 8)	exon (NM_001300800, exon 8 of 8)	15119	NM_001300800	79829		NM_024771	ENSG00000110583	NAA40	NAT11|NatD|PATT1|hNatD	N-alpha-acetyltransferase 40, NatD catalytic subunit	protein-coding
136865	chr2	186641651	186641980	+	0	NA	intron (NM_001145000, intron 10 of 27)	intron (NM_001145000, intron 10 of 27)	41610	NM_001144999	3685		NM_002210	ENSG00000138448	ITGAV	CD51|MSK8|VNRA|VTNR	integrin subunit alpha V	protein-coding
80850	chr16	3503101	3504280	+	0	NA	intron (NM_015041, intron 1 of 11)	AluJr|SINE|Alu	2686	NM_015041	23059		NM_015041	ENSG00000103351	CLUAP1	CFAP22|FAP22|IFT38	clusterin associated protein 1	protein-coding
179132	chr4	169024771	169025100	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-14680	NM_032783	84869		NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding
201372	chr6	144853601	144854000	+	0	NA	TTS (NM_007124)	TTS (NM_007124)	270652	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
59196	chr13	22127451	22127550	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-82785	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
109589	chr19	915101	915700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1933	NM_032551	84634		NM_032551	ENSG00000116014	KISS1R	AXOR12|CPPB1|GPR54|HH8|HOT7T175|KISS-1R	KISS1 receptor	protein-coding
90688	chr17	1730221	1730480	+	0	NA	intron (NM_001163809, intron 1 of 9)	intron (NM_001163809, intron 1 of 9)	5646	NM_001163809	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
6399	chr1	27947571	27947830	+	0	NA	intron (NM_001009568, intron 2 of 6)	AluSx4|SINE|Alu	-12273	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
100293	chr17	59751401	59752550	+	0	NA	intron (NM_001329397, intron 5 of 10)	AluJb|SINE|Alu	44321	NM_001329401	81671		NM_030938	ENSG00000062716	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding
63417	chr13	114086951	114088650	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-9845	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
126582	chr2	28760451	28761000	+	0	NA	intron (NM_206876, intron 2 of 8)	intron (NM_206876, intron 2 of 8)	8895	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
209166	chr7	75274221	75274500	+	0	NA	intron (NM_001382494, intron 2 of 8).2	intron (NM_001382494, intron 2 of 8).2	-6430	NM_001382563	105180390		NM_001382563	ENSG00000286038	SPDYE13	SPDYE13P	speedy/RINGO cell cycle regulator family member E13	protein-coding
150805	chr21	43935421	43935680	+	0	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	10152	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
157962	chr22	49812621	49813400	+	0	NA	intron (NM_001304808, intron 2 of 12)	intron (NM_001304808, intron 2 of 12)	11321	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
33023	chr10	110747301	110747700	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	103164	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
220459	chr8	100413021	100413680	+	0	NA	Intergenic	Intergenic	30587	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
171123	chr3	195534101	195534300	+	0	NA	intron (NM_006241, intron 1 of 5)	AluJr|SINE|Alu	9125	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
237791	chrX	129808871	129809100	+	0	NA	intron (NM_016032, intron 10 of 10)	L1MB8|LINE|L1	29036	NM_018990	54440		NM_018990	ENSG00000122122	SASH3	753P9|CXorf9|HACS2|IMD102|SH3D6C|SLY	SAM and SH3 domain containing 3	protein-coding
109660	chr19	1013451	1014030	+	0	NA	intron (NM_033420, intron 2 of 9)	intron (NM_033420, intron 2 of 9)	7383	NM_001033026	91304		NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
39652	chr11	61585471	61585830	+	0	NA	Intergenic	Intergenic	-2844	NR_110189	101927495		NR_110189	ENSG00000250230	LOC101927495	-	uncharacterized LOC101927495	ncRNA
150661	chr21	43425901	43428230	+	0	NA	promoter-TSS (NM_001320643).2	promoter-TSS (NM_001320643).2	66	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
238038	chrX	135326101	135326300	+	0	NA	intron (NM_007131, intron 1 of 6)	LTR12C|LTR|ERV1	16720	NM_001358449	110806299		NM_001358449	ENSG00000283644	ETDC	-	embryonic testis differentiation homolog C	protein-coding
158100	chr22	50010451	50012680	+	0	NA	intron (NM_001001694, intron 1 of 14)	intron (NM_001001694, intron 1 of 14)	1200	NM_001001694	400935		NM_001001694	ENSG00000188263	IL17REL	-	interleukin 17 receptor E like	protein-coding
26597	chr10	22233501	22233700	+	0	NA	Intergenic	Intergenic	-18472	NR_038921	100130992		NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
182134	chr5	56154921	56155580	+	0	NA	intron (NM_024669, intron 6 of 11)	LTR54|LTR|ERV1	78080	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
219209	chr8	66664571	66664730	+	0	NA	exon (NM_025054, exon 1 of 3)	exon (NM_025054, exon 1 of 3)	2581	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
83268	chr16	23981971	23982530	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	146267	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
173790	chr4	17617051	17617150	+	0	NA	intron (NM_025205, intron 1 of 3)	L2c|LINE|L2	2459	NM_025205	80306		NM_025205	ENSG00000118579	MED28	1500003D12Rik|EG1|magicin	mediator complex subunit 28	protein-coding
8804	chr1	42938221	42939350	+	0	NA	intron (NM_006516, intron 2 of 9)	L2a|LINE|L2	20083	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
44412	chr11	103872871	103873030	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	23044	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
194141	chr6	31989471	31989700	+	0	NA	intron (NM_001002029, intron 9 of 40).8	HERVKC4-int|LTR|ERVK	7528	NM_001252204	720		NM_007293	ENSG00000244731	C4A	C4|C4A2|C4A3|C4A4|C4A6|C4AD|C4S|CO4|CPAMD2|RG	complement C4A (Chido/Rodgers blood group)	protein-coding
128749	chr2	62146801	62147150	+	0	NA	Intergenic	Intergenic	-49140	NM_006577	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
57672	chr12	122775951	122776050	+	0	NA	intron (NR_027918, intron 1 of 12)	intron (NR_027918, intron 1 of 12)	1428	NM_201435	84660		NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|SPGF67|TSP-NY	coiled-coil domain containing 62	protein-coding
46736	chr11	128963051	128963350	+	0	NA	Intergenic	Intergenic	-19801	NM_022112	63970		NM_022112	ENSG00000120471	TP53AIP1	P53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein-coding
140589	chr2	233379151	233379250	+	0	NA	intron (NM_152879, intron 1 of 29)	L2c|LINE|L2	-8954	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
136951	chr2	190353271	190353430	+	0	NA	intron (NM_001128928, intron 2 of 6)	intron (NM_001128928, intron 2 of 6)	9761	NM_001128928	3628		NM_002194	ENSG00000151689	INPP1	-	inositol polyphosphate-1-phosphatase	protein-coding
213558	chr7	139114201	139114600	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-4680	NM_020119	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
106564	chr18	21703221	21705280	+	0	NA	intron (NM_138340, intron 1 of 8)	CpG	524	NM_001308256	171586		NM_138340	ENSG00000158201	ABHD3	LABH3	abhydrolase domain containing 3, phospholipase	protein-coding
16335	chr1	154266651	154266900	+	0	NA	intron (NM_001375615, intron 25 of 27)	intron (NM_001375615, intron 25 of 27)	-5854	NM_001018837	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
149293	chr21	28790701	28791300	+	0	NA	Intergenic	Intergenic	94367	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
214096	chr7	143714351	143715780	+	0	NA	promoter-TSS (NM_001130026).2	promoter-TSS (NM_001130026).2	-781	NM_001130026	285966		NM_173678	ENSG00000170379	TCAF2	FAM115C|FAM139A|GATD9|GATD9B	TRPM8 channel associated factor 2	protein-coding
172158	chr4	1215251	1215880	+	0	NA	non-coding (NR_104331, exon 5 of 6)	non-coding (NR_104331, exon 5 of 6)	5445	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
89815	chr16	89564121	89564830	+	0	NA	TTS (NM_000977)	TTS (NM_000977)	3045	NR_002450	606500		NR_002450		SNORD68	HBII-202	small nucleolar RNA, C/D box 68	snoRNA
105311	chr17	82548571	82549130	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	29118	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
136601	chr2	178476751	178477250	+	0	NA	intron (NM_181342, intron 2 of 3)	L1MB2|LINE|L1	1600	NM_001135212	51661		NM_016105	ENSG00000079150	FKBP7	FKBP23|PPIase	FKBP prolyl isomerase 7	protein-coding
184852	chr5	111755901	111756300	+	0	NA	5' UTR (NM_001142483, exon 1 of 3)	5' UTR (NM_001142483, exon 1 of 3)	151	NM_001142483	9315		NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
173461	chr4	8440201	8441230	+	0	NA	promoter-TSS (NM_003501)	promoter-TSS (NM_003501)	8	NM_003501	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
3325	chr1	15420101	15420600	+	0	NA	intron (NM_024329, intron 1 of 3)	AluJb|SINE|Alu	10462	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
25174	chr10	5442171	5442530	+	0	NA	intron (NM_001047160, intron 3 of 11)	intron (NM_001047160, intron 3 of 11)	-4201	NR_073040	10276		NM_005863	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
148101	chr20	63329171	63329630	+	0	NA	intron (NM_020882, intron 34 of 35)	intron (NM_020882, intron 34 of 35)	-30588	NR_110634	100130587		NR_110634	ENSG00000203900	LOC100130587	-	uncharacterized LOC100130587	ncRNA
140660	chr2	233967271	233967780	+	0	NA	intron (NM_024080, intron 15 of 25)	MIRb|SINE|MIR	50152	NM_024080	79054		NM_024080	ENSG00000144481	TRPM8	LTRPC6|LTrpC-6|TRPP8|trp-p8	transient receptor potential cation channel subfamily M member 8	protein-coding
31110	chr10	89327621	89328530	+	0	NA	promoter-TSS (NM_001549)	promoter-TSS (NM_001549)	78	NM_001289758	3437		NM_001549	ENSG00000119917	IFIT3	CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41	interferon induced protein with tetratricopeptide repeats 3	protein-coding
10984	chr1	84443671	84443830	+	0	NA	Intergenic	L1PA7|LINE|L1	35480	NM_058248	58511		NM_021233	ENSG00000137976	DNASE2B	DLAD	deoxyribonuclease 2 beta	protein-coding
51943	chr12	53741001	53741850	+	0	NA	Intergenic	AluY|SINE|Alu	10410	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
109948	chr19	1363221	1363900	+	0	NA	intron (NR_168277, intron 7 of 14)	intron (NR_168277, intron 7 of 14)	6141	NR_163149	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
28154	chr10	43465601	43465800	+	0	NA	intron (NM_001355446, intron 2 of 4)	SVA_D|Retroposon|SVA	28589	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
238974	chrX	155383971	155384130	+	0	NA	promoter-TSS (NR_036049).2	promoter-TSS (NR_036049).2	-852	NR_036259	100422985		NR_036259	ENSG00000221190	MIR1184-2	-	microRNA 1184-2	ncRNA
182616	chr5	66172751	66172850	+	0	NA	intron (NM_139168, intron 10 of 12)	intron (NM_139168, intron 10 of 12)	27965	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
144306	chr20	34721571	34721730	+	0	NA	intron (NM_001242539, intron 11 of 11)	MER1B|DNA|hAT-Charlie	16931	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
101973	chr17	74741321	74742500	+	0	NA	intron (NM_001163989, intron 2 of 8)	intron (NM_001163989, intron 2 of 8)	4654	NM_001006638	326624		NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding
142585	chr20	5542451	5542750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-32598	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
130394	chr2	85318401	85319780	+	0	NA	3' UTR (NM_001206841, exon 4 of 4)	3' UTR (NM_001206841, exon 4 of 4)	8899	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
4701	chr1	23116621	23117150	+	0	NA	intron (NM_033631, intron 1 of 4)	intron (NM_033631, intron 1 of 4)	51971	NM_033631	7798		NM_033631	ENSG00000169641	LUZP1	LUZP	leucine zipper protein 1	protein-coding
204894	chr7	6082721	6083150	+	0	NA	Intergenic	Intergenic	-22014	NM_032172	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
58740	chr12	132602701	132602930	+	0	NA	TTS (NM_001195520)	TTS (NM_001195520)	7767	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
214068	chr7	143395151	143396200	+	0	NA	intron (NM_005232, intron 11 of 17)	intron (NM_005232, intron 11 of 17)	-12138	NR_033897	285965		NR_033897	ENSG00000229153	EPHA1-AS1	-	EPHA1 antisense RNA 1	ncRNA
122271	chr19	49060971	49061250	+	0	NA	TTS (NM_006179)	TTS (NM_006179)	2757	NM_006179	4909		NM_006179	ENSG00000225950	NTF4	GLC10|GLC1O|NT-4|NT-4/5|NT-5|NT4|NT5|NTF5	neurotrophin 4	protein-coding
108272	chr18	63290801	63291550	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	28594	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
37378	chr11	16820321	16820730	+	0	NA	intron (NM_175058, intron 10 of 22)	intron (NM_175058, intron 10 of 22)	81878	NM_014267	10944		NM_014267	ENSG00000110696	C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
228623	chr9	105691001	105691730	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-3176	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
98863	chr17	48492571	48493400	+	0	NA	Intergenic	CpG	38026	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
141137	chr2	239205221	239205880	+	0	NA	intron (NM_006037, intron 3 of 26)	L1ME3Cz|LINE|L1	-10093	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
186291	chr5	134555601	134557100	+	0	NA	intron (NM_001289985, intron 4 of 11)	intron (NM_001289985, intron 4 of 11)	30242	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
196555	chr6	44075871	44076300	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-1433	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
115501	chr19	15409651	15409950	+	0	NA	intron (NM_014371, intron 2 of 13)	intron (NM_014371, intron 2 of 13)	9188	NM_014371	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
205000	chr7	6449321	6449900	+	0	NA	Intergenic	AluSc|SINE|Alu	-1598	NM_001142936	221955		NM_139179	ENSG00000164535	DAGLB	DAGLBETA|KCCR13L	diacylglycerol lipase beta	protein-coding
125554	chr2	15611501	15611800	+	0	NA	intron (NM_004939, intron 13 of 25)	SVA_D|Retroposon|SVA	19782	NM_004939	1653		NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding
22315	chr1	213783751	213784050	+	0	NA	Intergenic	Intergenic	-140849	NR_046189	100861504		NR_046189		LINC00538	PROX1UT|Yiya	long intergenic non-protein coding RNA 538	ncRNA
198346	chr6	104887451	104887630	+	0	NA	Intergenic	Intergenic	-27621	NM_001321080	57531		NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
185926	chr5	132871621	132871880	+	0	NA	Intergenic	Intergenic	-1918	NM_052971	116842		NM_052971	ENSG00000164406	LEAP2	LEAP-2	liver enriched antimicrobial peptide 2	protein-coding
2389	chr1	9430771	9430930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1854	NR_104622	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
190176	chr5	178160471	178160830	+	0	NA	Intergenic	Intergenic	-6690	NM_001034833	55651		NM_017838	ENSG00000145912	NHP2	DKCB2|NHP2P|NOLA2	NHP2 ribonucleoprotein	protein-coding
57225	chr12	121529351	121529830	+	0	NA	intron (NM_001005366, intron 8 of 22)	intron (NM_001005366, intron 8 of 22)	50656	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
234595	chrX	19792721	19792980	+	0	NA	intron (NM_001353892, intron 2 of 17)	MER20|DNA|hAT-Charlie	6923	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
140948	chr2	237749321	237749780	+	0	NA	intron (NM_001137551, intron 4 of 11)	intron (NM_001137551, intron 4 of 11)	-49229	NM_001080504	375316		NM_198852	ENSG00000177483	RBM44	-	RNA binding motif protein 44	protein-coding
81831	chr16	11573751	11574280	+	0	NA	intron (NR_024320, intron 1 of 3)	L1ME4b|LINE|L1	12358	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
59358	chr13	24625371	24625780	+	0	NA	Intergenic	LTR54|LTR|ERV1	45367	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
85839	chr16	57009121	57010230	+	0	NA	intron (NR_169520, intron 1 of 47)	L1M2|LINE|L1	20118	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
14084	chr1	120856571	120856730	+	0	NA	Intergenic	Intergenic	-5665	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
155407	chr22	38375421	38375680	+	0	NA	intron (NM_001289912, intron 3 of 14)	L1M2c|LINE|L1	23365	NM_001289912	102800317		NM_001289912	ENSG00000283900	TPTEP2-CSNK1E	LOC400927-CSNK1E	TPTEP2-CSNK1E readthrough	protein-coding
106105	chr18	9161071	9161230	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	23587	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
56376	chr12	113160971	113161130	+	0	NA	intron (NM_001111322, intron 19 of 19)	intron (NM_001111322, intron 19 of 19)	-1873	NR_106956	102466222		NR_106956	ENSG00000276908	MIR7106	hsa-mir-7106	microRNA 7106	ncRNA
82493	chr16	17366821	17367550	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	103775	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
37667	chr11	23303551	23303800	+	0	NA	Intergenic	L1PA2|LINE|L1	115515	NR_107021	102465860		NR_107021	ENSG00000275868	MIR8054	hsa-mir-8054	microRNA 8054	ncRNA
7373	chr1	32871771	32871930	+	0	NA	promoter-TSS (NM_001171940)	promoter-TSS (NM_001171940)	634	NM_001171941	252995		NM_153756	ENSG00000160097	FNDC5	FRCP2|irisin	fibronectin type III domain containing 5	protein-coding
70470	chr14	102070601	102071180	+	0	NA	Intergenic	AluSz|SINE|Alu	16154	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
136739	chr2	181263851	181263950	+	0	NA	intron (NR_130784, intron 3 of 4)	(GT)n|Simple_repeat|Simple_repeat	41752	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
50281	chr12	46363771	46364530	+	0	NA	intron (NM_001307936, intron 9 of 14)	intron (NM_001307936, intron 9 of 14)	8623	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
206737	chr7	36643901	36644100	+	0	NA	intron (NM_001177506, intron 4 of 21)	MSTA|LTR|ERVL-MaLR	-43880	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
178997	chr4	163544051	163544930	+	0	NA	intron (NM_001166373, intron 7 of 7)	intron (NM_001166373, intron 7 of 7)	49800	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
81138	chr16	4398721	4399450	+	0	NA	intron (NM_001351729, intron 6 of 27)	L1MB2|LINE|L1	16812	NM_001351729	79585		NM_024535	ENSG00000262246	CORO7	0610011B16Rik|CRN7|POD1	coronin 7	protein-coding
205281	chr7	8433751	8434100	+	0	NA	5' UTR (NM_152745, exon 1 of 3)	5' UTR (NM_152745, exon 1 of 3)	316	NM_152745	30010		NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
152809	chr22	21854101	21854300	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSp|SINE|Alu	13445	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
166421	chr3	113740801	113741200	+	0	NA	intron (NM_025146, intron 1 of 4)	intron (NM_025146, intron 1 of 4)	5249	NM_001308445	80218		NM_025146	ENSG00000121579	NAA50	MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p	N-alpha-acetyltransferase 50, NatE catalytic subunit	protein-coding
78439	chr15	92813201	92814380	+	0	NA	Intergenic	Intergenic	18306	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
228724	chr9	109118831	109120530	+	0	NA	exon (NM_032012, exon 1 of 18)	exon (NM_032012, exon 1 of 18)	267	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
65744	chr14	53155871	53156030	+	0	NA	intron (NR_110062, intron 1 of 2)	intron (NR_110062, intron 1 of 2)	2596	NR_110062	101927620		NR_110062	ENSG00000258731	DDHD1-DT	-	DDHD1 divergent transcript	ncRNA
226048	chr9	43554651	43554750	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	428534	NR_160669	102724904		NR_160669	ENSG00000291167	LOC102724904	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
209198	chr7	75420451	75420550	+	0	NA	intron (NM_001099415, intron 13 of 14)	L2a|LINE|L2	10178	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
210433	chr7	100093121	100093650	+	0	NA	TTS (NR_029510)	TTS (NR_029510)	258	NR_029498	407014		NR_029498	ENSG00000207547	MIR25	MIRN25|hsa-mir-25|miR-25	microRNA 25	ncRNA
95018	chr17	32441021	32441580	+	0	NA	Intergenic	Intergenic	-3210	NM_002815	5717		NM_002815	ENSG00000108671	PSMD11	Rpn6|S9|p44.5	proteasome 26S subunit, non-ATPase 11	protein-coding
222455	chr8	139461101	139461400	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	241873	NR_104210	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
116685	chr19	18416461	18418000	+	0	NA	Intergenic	CpG	-2168	NM_001009998	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
176212	chr4	84482721	84483180	+	0	NA	Intergenic	CpG	16342	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
27000	chr10	26804821	26806180	+	0	NA	intron (NR_145410, intron 2 of 11)	intron (NR_145410, intron 2 of 11)	55458	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
92655	chr17	10616551	10617000	+	0	NA	intron (NR_125367, intron 10 of 10)	MER5B|DNA|hAT-Charlie	40534	NM_002470	4621		NM_002470	ENSG00000109063	MYH3	CPSFS1A|CPSFS1B|CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE	myosin heavy chain 3	protein-coding
129859	chr2	72953801	72954800	+	0	NA	intron (NM_001371743, intron 9 of 9)	intron (NM_001371743, intron 9 of 9)	36781	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
176983	chr4	104983671	104983830	+	0	NA	Intergenic	L1PA11|LINE|L1	-162125	NM_017628	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
84568	chr16	30612101	30613000	+	0	NA	Intergenic	AluSg4|SINE|Alu	-1775	NR_073481	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
203092	chr6	166400671	166401450	+	0	NA	Intergenic	Intergenic	-18120	NR_164831	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
64844	chr14	35201051	35201950	+	0	NA	intron (NM_001256678, intron 4 of 6)	L1MC3|LINE|L1	-77058	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
162558	chr3	48651451	48651550	+	0	NA	intron (NM_001407, intron 13 of 34)	intron (NM_001407, intron 13 of 34)	-7220	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
21235	chr1	204213551	204214280	+	0	NA	promoter-TSS (NM_198447)	promoter-TSS (NM_198447)	73	NM_198447	127845		NM_198447	ENSG00000174567	GOLT1A	CGI-141|GOT1|GOT1B|HMFN1187|YMR292W|hGOT1b	golgi transport 1A	protein-coding
143512	chr20	31523621	31524100	+	0	NA	intron (NM_178580, intron 1 of 12)	intron (NM_178580, intron 1 of 12)	9418	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
106852	chr18	24051821	24052580	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-36740	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
84739	chr16	30946701	30947300	+	0	NA	intron (NM_001382781, intron 10 of 10)	CpG	-2068	NM_152288	93129		NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
195981	chr6	41973771	41974530	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx|SINE|Alu	-32302	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
146768	chr20	50884771	50885130	+	0	NA	Intergenic	Intergenic	24841	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
156498	chr22	41291551	41291850	+	0	NA	intron (NM_001317930, intron 1 of 15)	AluY|SINE|Alu	-5513	NM_001278651	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
77308	chr15	82357701	82357900	+	0	NA	intron (NR_004847, intron 1 of 4)	MIRb|SINE|MIR	2664	NR_004847	100134869		NR_004847		UBE2Q2P2	UBE2Q2P3|UBE2QP2	UBE2Q2 pseudogene 2	pseudo
116418	chr19	18005621	18005950	+	0	NA	intron (NM_001025604, intron 1 of 7)	SVA_D|Retroposon|SVA	-2385	NM_001286826	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
3455	chr1	15938551	15938650	+	0	NA	intron (NM_015001, intron 13 of 14)	intron (NM_015001, intron 13 of 14)	37501	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
214431	chr7	149866671	149867800	+	0	NA	TTS (NR_027040)	TTS (NR_027040)	-5729	NM_001367792	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
69440	chr14	94160921	94161430	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-13137	NM_020958	57718		NM_020958	ENSG00000119698	PPP4R4	CFAP14|KIAA1622|PP4R4	protein phosphatase 4 regulatory subunit 4	protein-coding
198079	chr6	90256501	90257300	+	0	NA	intron (NM_021813, intron 2 of 8)	L1MA9|LINE|L1	39943	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
184564	chr5	102773071	102773430	+	0	NA	intron (NM_001364588, intron 1 of 24)	intron (NM_001364588, intron 1 of 24)	17945	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
173974	chr4	26093021	26093680	+	0	NA	Intergenic	Intergenic	-70108	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
203149	chr6	166988801	166989000	+	0	NA	Intergenic	LTR19C|LTR|ERV1	9012	NR_037504	100500857		NR_037504	ENSG00000265828	MIR3939	mir-3939	microRNA 3939	ncRNA
133147	chr2	112681671	112682400	+	0	NA	Intergenic	Intergenic	36096	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
22203	chr1	212457721	212458300	+	0	NA	Intergenic	LTR50|LTR|ERVL	25090	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
120577	chr19	44998321	44998600	+	0	NA	Intergenic	L2a|LINE|L2	-3004	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
98488	chr17	47223071	47223430	+	0	NA	intron (NM_001002841, intron 7 of 7)	intron (NM_001002841, intron 7 of 7)	13902	NM_002476	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
5595	chr1	26038071	26038430	+	0	NA	3' UTR (NM_001004434, exon 8 of 8)	3' UTR (NM_001004434, exon 8 of 8)	7868	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
233997	chrX	2968401	2968630	+	0	NA	promoter-TSS (NM_001369079)	promoter-TSS (NM_001369079)	-270	NM_001282631	415		NM_000047	ENSG00000157399	ARSL	ARSE|ASE|CDPX|CDPX1|CDPXR	arylsulfatase L	protein-coding
44605	chr11	108499571	108499930	+	0	NA	Intergenic	Intergenic	-1366	NM_153705	143888		NM_153705	ENSG00000178202	POGLUT3	KDELC2	protein O-glucosyltransferase 3	protein-coding
103999	chr17	80096001	80096400	+	0	NA	intron (NM_017950, intron 18 of 19)	MIRb|SINE|MIR	-2628	NR_039607	100616121		NR_039607	ENSG00000265561	MIR1268B	-	microRNA 1268b	ncRNA
161523	chr3	42601951	42602550	+	0	NA	intron (NM_001349126, intron 2 of 18)	Tigger3a|DNA|TcMar-Tigger	-1172	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
81286	chr16	4666951	4667280	+	0	NA	intron (NM_001142291, intron 7 of 15)	intron (NM_001142291, intron 7 of 15)	-4203	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
30168	chr10	74192571	74192930	+	0	NA	intron (NM_001369124, intron 1 of 9)	AluJr|SINE|Alu	15987	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
73056	chr15	40898871	40899400	+	0	NA	intron (NM_020857, intron 3 of 4)	intron (NM_020857, intron 3 of 4)	4685	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
160626	chr3	31536771	31537330	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	4125	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
51390	chr12	51948301	51948700	+	0	NA	Intergenic	AluSx4|SINE|Alu	-3199	NM_020328	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
30400	chr10	78408051	78408150	+	0	NA	Intergenic	Intergenic	140758	NR_073447	414243		NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
190392	chr5	179795251	179796770	+	0	NA	exon (NM_145867, exon 4 of 5)	exon (NM_145867, exon 4 of 5)	2024	NM_145867	4056		NM_000897	ENSG00000213316	LTC4S	-	leukotriene C4 synthase	protein-coding
81073	chr16	4337801	4338200	+	0	NA	3' UTR (NM_032575, exon 7 of 7).2	3' UTR (NM_032575, exon 7 of 7).2	-9660	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
49208	chr12	15895801	15896000	+	0	NA	intron (NM_007178, intron 6 of 9)	intron (NM_007178, intron 6 of 9)	13513	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
50836	chr12	49112671	49113200	+	0	NA	Intergenic	MER9a2|LTR|ERVK	-2035	NM_001300751	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
75650	chr15	67501271	67501430	+	0	NA	non-coding (NR_147832, exon 18 of 18)	non-coding (NR_147832, exon 18 of 18)	19623	NR_040055	100506686		NR_040051	ENSG00000259673	IQCH-AS1	-	IQCH antisense RNA 1	ncRNA
115086	chr19	14222571	14222730	+	0	NA	Intergenic	AluJr|SINE|Alu	-16481	NM_014921	22859		NM_014921	ENSG00000072071	ADGRL1	CIRL1|CL1|DEDBANP|LEC2|LPHN1	adhesion G protein-coupled receptor L1	protein-coding
8015	chr1	38014051	38014350	+	0	NA	intron (NM_016037, intron 1 of 7)	MIR|SINE|MIR	1466	NM_016037	51118		NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11 small subunit processome component	protein-coding
78521	chr15	92946401	92946830	+	0	NA	intron (NM_001042572, intron 12 of 12)	AluSz|SINE|Alu	42216	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
1739	chr1	5980671	5981030	+	0	NA	intron (NR_111987, intron 2 of 32)	intron (NR_111987, intron 2 of 32)	11575	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
113775	chr19	10540171	10540530	+	0	NA	Intergenic	AluSp|SINE|Alu	-3554	NR_104025	84971		NM_032885	ENSG00000130734	ATG4D	APG4-D|APG4D|AUTL4|HsAPG4D	autophagy related 4D cysteine peptidase	protein-coding
169532	chr3	170159171	170159530	+	0	NA	intron (NM_001308116, intron 4 of 14)	HAL1ME|LINE|L1	22383	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
201168	chr6	142943661	142944900	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	896	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
51365	chr12	51822701	51822900	+	0	NA	intron (NM_001384995, intron 1 of 1)	intron (NM_001384995, intron 1 of 1)	9117	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
30861	chr10	86693601	86694200	+	0	NA	intron (NM_001171610, intron 8 of 13)	intron (NM_001171610, intron 8 of 13)	25336	NM_001080116	11155		NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
77742	chr15	85744471	85744930	+	0	NA	3' UTR (NM_001270546, exon 29 of 29)	3' UTR (NM_001270546, exon 29 of 29)	14025	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
235813	chrX	49235271	49236200	+	0	NA	intron (NM_014008, intron 1 of 16)	CpG	265	NM_014008	28952		NM_014008	ENSG00000101997	CCDC22	CXorf37|JM1|RTSC2	coiled-coil domain containing 22	protein-coding
23165	chr1	226736961	226737700	+	0	NA	exon (NM_002221, exon 2 of 8)	exon (NM_002221, exon 2 of 8)	1845	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
232484	chr9	136248701	136249600	+	0	NA	TTS (NM_001378188)	TTS (NM_001378188)	-3338	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
120320	chr19	43518851	43518950	+	0	NA	intron (NM_001320869, intron 1 of 4)	Charlie1|DNA|hAT-Charlie	8301	NM_001320867	23474		NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1 persulfide dioxygenase	protein-coding
29211	chr10	68990401	68991000	+	0	NA	intron (NM_015634, intron 1 of 6)	intron (NM_015634, intron 1 of 6)	1897	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
78670	chr15	95259471	95259630	+	0	NA	Intergenic	Intergenic	67550	NR_034095	400456		NR_034095	ENSG00000248441	LETR1	LINC01197	lymphatic endothelial transcriptional regulator lncRNA 1	ncRNA
154663	chr22	36351271	36351850	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	36407	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
184105	chr5	93899001	93899280	+	0	NA	intron (NR_028080, intron 4 of 8)	intron (NR_028080, intron 4 of 8)	-157540	NM_153216	134187		NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
157101	chr22	42634471	42635030	+	0	NA	intron (NM_001129819, intron 2 of 8)	AluSq2|SINE|Alu	5851	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
47426	chr12	3129321	3129580	+	0	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	52071	NM_006675	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
97187	chr17	42681001	42681830	+	0	NA	intron (NM_016602, intron 1 of 1)	intron (NM_016602, intron 1 of 1)	428	NM_016602	2826		NM_016602	ENSG00000184451	CCR10	GPR2	C-C motif chemokine receptor 10	protein-coding
20552	chr1	198709201	198709400	+	0	NA	intron (NM_002838, intron 10 of 32)	Tigger4b|DNA|TcMar-Tigger	70260	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
103124	chr17	77383871	77384030	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	7867	NM_001113494	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
190143	chr5	178108471	178109030	+	0	NA	Intergenic	Intergenic	-4782	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
59999	chr13	32426901	32427600	+	0	NA	intron (NM_001353637, intron 1 of 1)	CpG	880	NM_001353629	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
46223	chr11	124115221	124116050	+	0	NA	intron (NM_014622, intron 1 of 17)	intron (NM_014622, intron 1 of 17)	185	NM_001130142	4013		NM_014622	ENSG00000110002	VWA5A	BCSC-1|BCSC1|LOH11CR2A	von Willebrand factor A domain containing 5A	protein-coding
67279	chr14	69260551	69260650	+	0	NA	intron (NM_020692, intron 1 of 15)	CpG	442	NM_020692	57452		NM_020692	ENSG00000100626	GALNT16	GALNACT16|GALNTL1|GalNAc-T16	polypeptide N-acetylgalactosaminyltransferase 16	protein-coding
23190	chr1	226955901	226956100	+	0	NA	intron (NM_020247, intron 1 of 14)	intron (NM_020247, intron 1 of 14)	15706	NM_020247	56997		NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding
102413	chr17	75623821	75624080	+	0	NA	exon (NM_001309242, exon 54 of 63)	exon (NM_001309242, exon 54 of 63)	-9484	NM_001162995	643008		NM_001162995	ENSG00000204323	SMIM5	C17orf109|PP12104	small integral membrane protein 5	protein-coding
105884	chr18	3261151	3263450	+	0	NA	promoter-TSS (NR_130144)	promoter-TSS (NR_130144)	59	NR_130145	104968399		NR_130143	ENSG00000264235	MYL12-AS1	-	MYL12A and MYL12B antisense RNA 1	ncRNA
91304	chr17	4262021	4262280	+	0	NA	intron (NM_001330063, intron 1 of 24)	AluJo|SINE|Alu	1697	NM_001257999	51479		NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
231808	chr9	132408601	132408930	+	0	NA	Intergenic	LTR46|LTR|ERV1	-1446	NM_001282957	389799		NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
5897	chr1	26809771	26810730	+	0	NA	Intergenic	LTR50|LTR|ERVL	-16438	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
70639	chr14	102915171	102915330	+	0	NA	Intergenic	Intergenic	-7413	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
147100	chr20	53872121	53873580	+	0	NA	Intergenic	Intergenic	2859	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
201196	chr6	143399951	143400050	+	0	NA	Intergenic	Intergenic	42677	NM_001286259	134637		NM_182503	ENSG00000189007	ADAT2	DEADC1|TAD2|dJ20N2|dJ20N2.1	adenosine deaminase tRNA specific 2	protein-coding
17773	chr1	159071821	159072300	+	0	NA	intron (NM_001348247, intron 1 of 4)	intron (NM_001348247, intron 1 of 4)	4706	NM_004833	9447		NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding
2228	chr1	8856751	8857050	+	0	NA	Intergenic	Intergenic	9690	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
101690	chr17	68437801	68439280	+	0	NA	intron (NR_135470, intron 4 of 12)	intron (NR_135470, intron 4 of 12)	-13992	NR_030365	693220		NR_030365	ENSG00000207561	MIR635	MIRN635|hsa-mir-635	microRNA 635	ncRNA
20044	chr1	185419701	185419900	+	0	NA	Intergenic	Intergenic	-84761	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
65185	chr14	49622321	49623050	+	0	NA	3' UTR (NM_002408, exon 1 of 1)	3' UTR (NM_002408, exon 1 of 1)	1886	NM_002408	4247		NM_002408	ENSG00000168282	MGAT2	CDG2A|CDGS2|GLCNACTII|GNT-II|GNT2	alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
39316	chr11	58958651	58958750	+	0	NA	intron (NR_033853, intron 5 of 5)	intron (NR_033853, intron 5 of 5)	15451	NM_001220496	92292		NM_080661	ENSG00000166840	GLYATL1	GATF-C|GNAT	glycine-N-acyltransferase like 1	protein-coding
183054	chr5	73448501	73449130	+	0	NA	promoter-TSS (NM_004472)	promoter-TSS (NM_004472)	-38	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
150152	chr21	38777371	38777730	+	0	NA	Intergenic	MER30|DNA|hAT-Charlie	-4073	NR_027065	400866		NM_001001789	ENSG00000223806	LINC00114	C21orf24|NCRNA00114	long intergenic non-protein coding RNA 114	ncRNA
101946	chr17	74521571	74522130	+	0	NA	3' UTR (NM_174892, exon 4 of 4)	3' UTR (NM_174892, exon 4 of 4)	9625	NM_174892	124599		NM_174892	ENSG00000178789	CD300LB	CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5	CD300 molecule like family member b	protein-coding
135585	chr2	165953211	165954430	+	0	NA	promoter-TSS (NM_024753)	promoter-TSS (NM_024753)	-44	NM_024753	79809		NM_024753	ENSG00000123607	TTC21B	ATD4|CFAP60|FAP60|FLA17|IFT139|IFT139B|JBTS11|NPHP12|Nbla10696|SRTD4|THM1	tetratricopeptide repeat domain 21B	protein-coding
119833	chr19	41362101	41362680	+	0	NA	intron (NM_030578, intron 2 of 3)	AluYg6|SINE|Alu	-1557	NM_001369864	641649		NM_001042595	ENSG00000142046	TMEM91	DSPC3|IFITMD6|SynDIG3	transmembrane protein 91	protein-coding
10875	chr1	78008171	78008330	+	0	NA	intron (NM_001317103, intron 1 of 1)	L1ME1|LINE|L1	3311	NM_007034	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
238461	chrX	153019121	153019400	+	0	NA	Intergenic	L1PA15|LINE|L1	-25144	NM_001184924	114824		NM_052926	ENSG00000198883	PNMA5	-	PNMA family member 5	protein-coding
144494	chr20	35658621	35659480	+	0	NA	intron (NM_001198838, intron 1 of 2)	intron (NM_001198838, intron 1 of 2)	-5141	NM_003915	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
28067	chr10	43298371	43298730	+	0	NA	Intergenic	L2|LINE|L2	-31485	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
4605	chr1	22089921	22090580	+	0	NA	3' UTR (NM_044472, exon 6 of 6)	3' UTR (NM_044472, exon 6 of 6)	37541	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
154764	chr22	36515171	36515330	+	0	NA	intron (NR_156418, intron 12 of 14)	AluSp|SINE|Alu	-8210	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
148962	chr21	13545471	13545830	+	0	NA	promoter-TSS (NR_110544)	promoter-TSS (NR_110544)	-383	NR_110544	102724188		NR_110544	ENSG00000228159	LINC01674	-	long intergenic non-protein coding RNA 1674	ncRNA
130406	chr2	85330721	85331480	+	0	NA	Intergenic	L2c|LINE|L2	-3111	NM_001368095	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
90556	chr17	1506201	1506900	+	0	NA	intron (NM_016532, intron 7 of 11)	intron (NM_016532, intron 7 of 11)	10062	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
187803	chr5	146445901	146446230	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1268	NM_001382548	10915		NM_006706	ENSG00000113649	TCERG1	CA150|TAF2S|Urn1	transcription elongation regulator 1	protein-coding
146796	chr20	50933801	50934000	+	0	NA	TTS (NM_001317036)	TTS (NM_001317036)	-2463	NM_181442	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
198373	chr6	105460901	105461100	+	0	NA	Intergenic	LTR1F|LTR|ERV1	-57918	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
141263	chr2	239934401	239935000	+	0	NA	intron (NR_136158, intron 7 of 10)	L1MA5A|LINE|L1	8394	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
156466	chr22	41255971	41256130	+	0	NA	exon (NM_001317930, exon 10 of 16)	exon (NM_001317930, exon 10 of 16)	-3000	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
3181	chr1	13705121	13705650	+	0	NA	5' UTR (NM_012231, exon 1 of 10)	5' UTR (NM_012231, exon 1 of 10)	530	NM_012231	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
238790	chrX	154380671	154380830	+	0	NA	intron (NM_000117, intron 4 of 5)	intron (NM_000117, intron 4 of 5)	1455	NM_000117	2010		NM_000117	ENSG00000102119	EMD	EDMD|LEMD5|STA	emerin	protein-coding
104291	chr17	80866151	80866500	+	0	NA	intron (NM_001163034, intron 13 of 29)	L1ME1|LINE|L1	-60693	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
175702	chr4	77080851	77081230	+	0	NA	Intergenic	AluSz6|SINE|Alu	-5051	NM_006835	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
37444	chr11	17979501	17980080	+	0	NA	intron (NR_104040, intron 8 of 11)	MIR3|SINE|MIR	33257	NR_104041	26297		NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
222874	chr8	142753271	142753630	+	0	NA	promoter-TSS (NM_205545)	promoter-TSS (NM_205545)	-918	NM_205545	137797		NM_205545	ENSG00000197353	LYPD2	LYPDC2|UNQ430	LY6/PLAUR domain containing 2	protein-coding
79085	chr16	174401	174600	+	0	NA	TTS (NM_000517)	TTS (NM_000517)	1624	NM_000517	3040		NM_000517	ENSG00000188536	HBA2	ECYT7|HBA-T2|HBH	hemoglobin subunit alpha 2	protein-coding
173038	chr4	4867551	4867730	+	0	NA	Intergenic	CpG	7975	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
125862	chr2	24509471	24510100	+	0	NA	intron (NM_001362954, intron 1 of 23)	intron (NM_001362954, intron 1 of 23)	17908	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
24944	chr10	1302551	1302650	+	0	NA	intron (NM_018702, intron 3 of 9)	L1PA2|LINE|L1	142832	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
111822	chr19	4508151	4508250	+	0	NA	intron (NM_001367868, intron 6 of 7)	intron (NM_001367868, intron 6 of 7)	10286	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
61012	chr13	48094171	48095650	+	0	NA	intron (NM_001270629, intron 1 of 6)	CpG	194	NM_014166	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
100299	chr17	59784041	59784580	+	0	NA	intron (NM_030938, intron 7 of 11)	intron (NM_030938, intron 7 of 11)	-56956	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
230297	chr9	127946971	127947330	+	0	NA	intron (NM_203305, intron 3 of 7)	AluSc|SINE|Alu	3564	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
22726	chr1	224195771	224195930	+	0	NA	Intergenic	AluSx3|SINE|Alu	12170	NM_001321542	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
78409	chr15	92075651	92076150	+	0	NA	intron (NM_013272, intron 2 of 9)	L3|LINE|CR1	221596	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
179471	chr4	184472071	184473600	+	0	NA	intron (NM_002199, intron 1 of 8)	CpG	1715	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
131238	chr2	95682701	95682900	+	0	NA	Intergenic	CpG	90799	NM_138800	129868		NM_138800	ENSG00000144015	TRIM43	TRIM43A	tripartite motif containing 43	protein-coding
118941	chr19	38790871	38792330	+	0	NA	exon (NM_001042507, exon 4 of 4)	exon (NM_001042507, exon 4 of 4)	2400	NM_001042507	653499		NM_001042507	ENSG00000178934	LGALS7B	GAL7|Gal-7|HKL-14|LGALS7|PI7	galectin 7B	protein-coding
226348	chr9	69761051	69761450	+	0	NA	Intergenic	AluYb8|SINE|Alu	-1239	NM_001099666	375743		NM_001099666	ENSG00000188647	PTAR1	-	protein prenyltransferase alpha subunit repeat containing 1	protein-coding
127478	chr2	42234021	42234280	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-63919	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
154286	chr22	31676401	31677880	+	0	NA	Intergenic	L2a|LINE|L2	-14576	NM_001326421	23761		NM_014338	ENSG00000241878	PISD	DJ858B16|LIBF|PSD|PSDC|PSSC|dJ858B16.2	phosphatidylserine decarboxylase	protein-coding
81460	chr16	8890451	8890850	+	0	NA	Intergenic	Intergenic	-21638	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
51020	chr12	49740171	49740330	+	0	NA	Intergenic	LTR2|LTR|ERV1	-1307	NM_003217	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
212435	chr7	128387551	128388480	+	0	NA	intron (NR_148338, intron 2 of 2)	intron (NR_148338, intron 2 of 2)	1333	NR_148339	107986845		NR_148338		LOC107986845	-	uncharacterized LOC107986845	ncRNA
81108	chr16	4369871	4370430	+	0	NA	intron (NM_001351729, intron 9 of 27)	intron (NM_001351729, intron 9 of 27)	-1698	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
239514	chrY	56831771	56831930	+	0	NA	Intergenic	Intergenic	-122405	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
171129	chr3	195539121	195539580	+	0	NA	intron (NM_006241, intron 1 of 5)	Charlie7|DNA|hAT-Charlie	3975	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
220453	chr8	100384371	100385200	+	0	NA	Intergenic	Intergenic	2022	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
74345	chr15	58607271	58607430	+	0	NA	intron (NM_001320570, intron 13 of 14)	intron (NM_001320570, intron 13 of 14)	86257	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
36962	chr11	11243701	11244600	+	0	NA	Intergenic	Intergenic	109100	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
1702	chr1	5137051	5137150	+	0	NA	Intergenic	Intergenic	482491	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
7370	chr1	32868951	32869250	+	0	NA	intron (NM_153756, intron 1 of 5)	intron (NM_153756, intron 1 of 5)	1812	NM_001171940	252995		NM_153756	ENSG00000160097	FNDC5	FRCP2|irisin	fibronectin type III domain containing 5	protein-coding
183440	chr5	78981121	78981780	+	0	NA	intron (NM_000046, intron 1 of 7)	intron (NM_000046, intron 1 of 7)	3860	NM_000046	411		NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
9564	chr1	51732701	51733980	+	0	NA	intron (NM_148905, intron 1 of 18)	intron (NM_148905, intron 1 of 18)	3490	NM_001350210	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
66551	chr14	62077471	62078200	+	0	NA	intron (NM_001367652, intron 4 of 6)	intron (NM_001367652, intron 4 of 6)	-39522	NR_015358	646113		NM_001039785		LINC00643	-	long intergenic non-protein coding RNA 643	ncRNA
128644	chr2	61422551	61422850	+	0	NA	intron (NM_014709, intron 1 of 79)	L1MB2|LINE|L1	-5323	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
85809	chr16	56978121	56978380	+	0	NA	exon (NM_001286085, exon 10 of 15)	exon (NM_001286085, exon 10 of 15)	-11307	NM_001384965	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
45077	chr11	117069501	117069850	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	28753	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
49186	chr12	15534321	15534830	+	0	NA	intron (NM_030667, intron 12 of 26)	L2b|LINE|L2	-12036	NM_030671	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
81801	chr16	11542951	11543450	+	0	NA	Intergenic	AluJo|SINE|Alu	-15953	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
122826	chr19	50414471	50415180	+	0	NA	exon (NM_001308632, exon 19 of 26)	exon (NM_001308632, exon 19 of 26)	-4113	NM_003121	6689		NM_003121	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor	protein-coding
81495	chr16	8949671	8950100	+	0	NA	promoter-TSS (NR_135826)	promoter-TSS (NR_135826)	-231	NR_135826	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
99427	chr17	50112521	50113030	+	0	NA	TTS (NM_002611)	TTS (NM_002611)	17080	NM_001199899	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
207925	chr7	50696721	50697030	+	0	NA	intron (NM_001371009, intron 2 of 15)	L1MB4|LINE|L1	8426	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
106780	chr18	23838751	23839050	+	0	NA	intron (NM_198129, intron 26 of 74)	intron (NM_198129, intron 26 of 74)	-34120	NM_000227	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
109583	chr19	907221	907830	+	0	NA	intron (NM_138774, intron 1 of 7)	MIRb|SINE|MIR	5694	NM_138774	91300		NM_138774	ENSG00000198858	R3HDM4	C19orf22	R3H domain containing 4	protein-coding
198046	chr6	90189901	90190100	+	0	NA	intron (NM_021813, intron 4 of 8)	AluSx3|SINE|Alu	106843	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
149299	chr21	28834271	28834430	+	0	NA	Intergenic	L1PB1|LINE|L1	51017	NM_013240	29104		NM_013240	ENSG00000156239	N6AMT1	C21orf127|HEMK2|KMT9|MTQ2|N6AMT|PRED28|PrmC|m.HsaHemK2P	N-6 adenine-specific DNA methyltransferase 1	protein-coding
188585	chr5	157158471	157158630	+	0	NA	Intergenic	LTR16A|LTR|ERVL	7714	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
203176	chr6	167118001	167118200	+	0	NA	intron (NM_004367, intron 1 of 2)	intron (NM_004367, intron 1 of 2)	-4653	NM_031409	1235		NM_004367	ENSG00000112486	CCR6	BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22	C-C motif chemokine receptor 6	protein-coding
236610	chrX	74351771	74351930	+	0	NA	Intergenic	Intergenic	47670	NM_203303	389874		NM_203303	ENSG00000187969	ZCCHC13	CNBP2|ZNF9L	zinc finger CCHC-type containing 13	protein-coding
103670	chr17	78789251	78790680	+	0	NA	intron (NM_001385179, intron 20 of 20)	intron (NM_001385179, intron 20 of 20)	-7623	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
148616	chr21	5508721	5509180	+	0	NA	Intergenic	Intergenic	-44687	NM_001322047	102724843		NM_001322047	ENSG00000277067	LOC102724843	-	uncharacterized LOC102724843	ncRNA
92722	chr17	14211771	14212130	+	0	NA	Intergenic	Intergenic	24912	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
205300	chr7	11129971	11130130	+	0	NA	intron (NM_001007157, intron 17 of 17)	MLT1I|LTR|ERVL-MaLR	156178	NR_033436	9678		NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
136116	chr2	173941201	173941600	+	0	NA	intron (NM_001172712, intron 4 of 6)	AluJb|SINE|Alu	22480	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
115534	chr19	15454151	15454580	+	0	NA	exon (NM_022904, exon 13 of 18)	exon (NM_022904, exon 13 of 18)	-4409	NM_021241	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
214368	chr7	149669151	149669400	+	0	NA	Intergenic	AluSz|SINE|Alu	-44485	NR_027789	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
21313	chr1	204511201	204511800	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-4879	NM_001204172	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
12050	chr1	98232621	98232880	+	0	NA	intron (NR_046088, intron 1 of 2)	L1PA11|LINE|L1	22039	NR_046088	729987		NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA
137888	chr2	200851151	200851570	+	0	NA	Intergenic	L1PB1|LINE|L1	13201	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
141686	chr2	241809321	241809580	+	0	NA	intron (NM_001167600, intron 1 of 3)	intron (NM_001167600, intron 1 of 3)	257	NM_001167601	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
97389	chr17	43362971	43363350	+	0	NA	Intergenic	Intergenic	25738	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
219203	chr8	66656201	66656400	+	0	NA	intron (NM_025054, intron 1 of 2)	AluJr|SINE|Alu	10931	NM_025054	80124		NM_025054	ENSG00000175073	VCPIP1	DUBA3|VCIP135	valosin containing protein interacting protein 1	protein-coding
13798	chr1	117429951	117430050	+	0	NA	intron (NM_006699, intron 5 of 12)	SVA_F|Retroposon|SVA	62551	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
130094	chr2	74511821	74512500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2290	NM_016170	3196		NM_001534	ENSG00000115297	TLX2	HOX11L1|NCX	T cell leukemia homeobox 2	protein-coding
16456	chr1	154587621	154587880	+	0	NA	intron (NM_001111, intron 11 of 14)	L2c|LINE|L2	18503	NM_001193495	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
17253	chr1	156368951	156370530	+	0	NA	intron (NM_020407, intron 1 of 9)	MIRb|SINE|MIR	529	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
52945	chr12	57452201	57452400	+	0	NA	TTS (NM_005538)	TTS (NM_005538)	-3007	NM_031479	83729		NM_031479	ENSG00000139269	INHBE	-	inhibin subunit beta E	protein-coding
144006	chr20	33209771	33210030	+	0	NA	intron (NR_026760, intron 8 of 8)	intron (NR_026760, intron 8 of 8)	-7410	NM_001042439	128861		NM_178466	ENSG00000131059	BPIFA3	C20orf71|SPLUNC3	BPI fold containing family A member 3	protein-coding
181515	chr5	43033821	43034230	+	0	NA	intron (NR_104651, intron 2 of 2)	intron (NR_104651, intron 2 of 2)	6294	NM_001014279	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
128743	chr2	61917671	61918080	+	0	NA	intron (NM_152516, intron 1 of 2)	intron (NM_152516, intron 1 of 2)	12233	NM_152516	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
170274	chr3	184301021	184301280	+	0	NA	intron (NM_001278709, intron 1 of 18)	AluSq2|SINE|Alu	569	NM_001278709	5708		NM_002808	ENSG00000175166	PSMD2	P97|RPN1|S2|TRAP2	proteasome 26S subunit ubiquitin receptor, non-ATPase 2	protein-coding
194428	chr6	33114451	33114750	+	0	NA	intron (NR_001435, intron 1 of 4)	intron (NR_001435, intron 1 of 4)	2084	NR_001435	3116		NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo
209815	chr7	88045671	88046030	+	0	NA	intron (NM_021721, intron 3 of 27)	L1MA8|LINE|L1	111599	NM_021723	53616		NM_004194	ENSG00000008277	ADAM22	ADAM 22|DEE61|EIEE61|MDC2	ADAM metallopeptidase domain 22	protein-coding
94263	chr17	28695671	28695830	+	0	NA	intron (NM_003170, intron 29 of 36)	intron (NM_003170, intron 29 of 36)	14354	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
140583	chr2	233359951	233360250	+	0	NA	intron (NM_152879, intron 1 of 29)	intron (NM_152879, intron 1 of 29)	5606	NM_152879	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
67759	chr14	73720801	73721300	+	0	NA	intron (NM_001043318, intron 11 of 11)	MIR|SINE|MIR	-6666	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
218191	chr8	41999201	41999880	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-52210	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
56624	chr12	118308071	118308430	+	0	NA	intron (NM_001346487, intron 1 of 20)	MER41A|LTR|ERV1	51455	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
47648	chr12	6280921	6281380	+	0	NA	Intergenic	L2b|LINE|L2	-29182	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
19478	chr1	174996371	174997130	+	0	NA	Intergenic	L2|LINE|L2	-2685	NM_001007214	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
151715	chr22	17640671	17641130	+	0	NA	intron (NM_001270726, intron 1 of 5)	AluY|SINE|Alu	2143	NM_015367	23786		NM_015367	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2 like 13	protein-coding
111795	chr19	4450771	4451330	+	0	NA	intron (NM_025241, intron 4 of 10)	AluSq2|SINE|Alu	4251	NM_001171091	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
228629	chr9	105782471	105782700	+	0	NA	Intergenic	L1PA2|LINE|L1	88044	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
43155	chr11	75338451	75338950	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	-3514	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
169905	chr3	177646171	177647130	+	0	NA	intron (NR_047568, intron 3 of 3)	L3|LINE|CR1	-170215	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
105011	chr17	82034321	82035000	+	0	NA	TTS (NM_005052)	TTS (NM_005052)	2982	NM_001316307	5881		NM_005052	ENSG00000169750	RAC3	-	Rac family small GTPase 3	protein-coding
215510	chr7	158700171	158700330	+	0	NA	intron (NM_001281932, intron 3 of 28)	Charlie20a|DNA|hAT-Charlie	4554	NM_001281932	54892		NM_017760	ENSG00000146918	NCAPG2	3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2	non-SMC condensin II complex subunit G2	protein-coding
214396	chr7	149789101	149789500	+	0	NA	non-coding (NR_163594, exon 28 of 103)	non-coding (NR_163594, exon 28 of 103)	13258	NR_163594	23145		NM_198455	ENSG00000197558	SSPOP	SSPO	SCO-spondin, pseudogene	pseudo
148134	chr20	63473821	63474600	+	0	NA	Intergenic	Intergenic	-1555	NM_172108	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
136634	chr2	179129701	179129930	+	0	NA	intron (NM_178123, intron 10 of 17)	intron (NM_178123, intron 10 of 17)	-79678	NM_173648	285025		NM_173648	ENSG00000163492	CCDC141	CAMDI	coiled-coil domain containing 141	protein-coding
16305	chr1	154175751	154176050	+	0	NA	intron (NM_001278188, intron 1 of 6)	AluJb|SINE|Alu	2304	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
88618	chr16	85612701	85614530	+	0	NA	intron (NM_001278184, intron 1 of 14)	CpG-10032	293	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
40562	chr11	64342221	64343280	+	0	NA	promoter-TSS (NR_106977)	promoter-TSS (NR_106977)	-846	NR_106977	102466815		NR_106977	ENSG00000278359	MIR7155	hsa-mir-7155	microRNA 7155	ncRNA
15162	chr1	148959001	148959450	+	0	NA	intron (NM_001350520, intron 1 of 39)	L2a|LINE|L2	6768	NM_001350520	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
56977	chr12	120548171	120548530	+	0	NA	intron (NM_001330474, intron 2 of 16)	L2a|LINE|L2	13994	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
73783	chr15	45649971	45651030	+	0	NA	intron (NM_021199, intron 1 of 9)	LTR12C|LTR|ERV1	15471	NM_021199	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
53113	chr12	57784101	57784300	+	0	NA	intron (NM_005726, intron 2 of 5)	Tigger3b|DNA|TcMar-Tigger	1413	NM_001172695	10102		NM_005726	ENSG00000123297	TSFM	EFTS|EFTSMT	Ts translation elongation factor, mitochondrial	protein-coding
182101	chr5	56050421	56051430	+	0	NA	Intergenic	Intergenic	55758	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
46706	chr11	128831101	128831630	+	0	NA	Intergenic	Intergenic	11104	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
26689	chr10	22633401	22634620	+	0	NA	intron (NM_005028, intron 1 of 9)	L2b|LINE|L2	80098	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
158785	chr3	9503221	9503730	+	0	NA	intron (NM_198560, intron 3 of 3)	intron (NM_198560, intron 3 of 3)	50347	NM_198560	375323		NM_198560	ENSG00000156959	LHFPL4	GARLH4	LHFPL tetraspan subfamily member 4	protein-coding
33940	chr10	124619071	124620150	+	0	NA	3' UTR (NM_014661, exon 5 of 5)	3' UTR (NM_014661, exon 5 of 5)	-84418	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
169655	chr3	171480371	171481150	+	0	NA	Intergenic	Intergenic	-20352	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
80594	chr16	2911421	2912650	+	0	NA	promoter-TSS (NM_020912)	promoter-TSS (NM_020912)	56	NM_020912	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
110108	chr19	1556571	1556930	+	0	NA	exon (NM_001174118, exon 2 of 3)	exon (NM_001174118, exon 2 of 3)	11308	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
223538	chr8	144140821	144141180	+	0	NA	TTS (NM_016458)	TTS (NM_016458)	3226	NM_016458	51236		NM_016458	ENSG00000235173	HGH1	BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B	HGH1 homolog	protein-coding
238338	chrX	149543871	149544850	+	0	NA	promoter-TSS (NM_001171909)	promoter-TSS (NM_001171909)	-160	NM_001171909	91966		NM_178124	ENSG00000197620	EOLA1	CXorf40|CXorf40A	endothelium and lymphocyte associated ASCH domain 1	protein-coding
231977	chr9	133199801	133200230	+	0	NA	Intergenic	CpG	9235	NM_001288987	29989		NM_014581	ENSG00000171102	OBP2B	LCN14|OBPIIb	odorant binding protein 2B	protein-coding
101979	chr17	74750501	74751000	+	0	NA	intron (NM_004252, intron 1 of 5)	(CACC)n|Simple_repeat|Simple_repeat	2122	NM_004252	9368		NM_004252	ENSG00000109062	NHERF1	EBP50|NHE-RF|NHERF|NHERF-1|NPHLOP2|SLC9A3R1	NHERF family PDZ scaffold protein 1	protein-coding
92214	chr17	7861721	7861980	+	0	NA	3' UTR (NM_001330110, exon 4 of 4)	3' UTR (NM_001330110, exon 4 of 4)	3847	NM_001330110	124637		NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
139530	chr2	224579171	224579950	+	0	NA	intron (NM_003590, intron 1 of 15)	intron (NM_003590, intron 1 of 15)	5803	NM_003590	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
102295	chr17	75340671	75340830	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	-51301	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
167758	chr3	132442401	132443000	+	0	NA	intron (NM_015268, intron 2 of 55)	intron (NM_015268, intron 2 of 55)	25198	NM_015268	23317		NM_015268	ENSG00000138246	DNAJC13	PARK21|RME8	DnaJ heat shock protein family (Hsp40) member C13	protein-coding
136733	chr2	181239271	181239650	+	0	NA	intron (NR_130784, intron 2 of 4)	L2a|LINE|L2	66192	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
73128	chr15	41291171	41291530	+	0	NA	intron (NR_152821, intron 2 of 4)	MLT1F|LTR|ERVL-MaLR	6008	NR_152821	729082		NR_026757	ENSG00000247556	OIP5-AS1	cyrano|linc-OIP5	OIP5 antisense RNA 1	ncRNA
40291	chr11	63857271	63857430	+	0	NA	intron (NM_004954, intron 1 of 16)	AluSx1|SINE|Alu	18240	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
14422	chr1	144364201	144364800	+	0	NA	Intergenic	L2|LINE|L2	9159	NM_001164261	645142		NM_001164261	ENSG00000289549	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding
171994	chr4	951601	952000	+	0	NA	intron (NM_032326, intron 6 of 10)	intron (NM_032326, intron 6 of 10)	19340	NM_032326	84286		NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
215767	chr8	2089821	2090130	+	0	NA	intron (NM_003970, intron 14 of 36).2	CpG	13386	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
30679	chr10	80504801	80505000	+	0	NA	intron (NM_001351269, intron 3 of 8)	intron (NM_001351269, intron 3 of 8)	31042	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
166148	chr3	111566951	111567630	+	0	NA	intron (NR_134917, intron 2 of 14)	intron (NR_134917, intron 2 of 14)	25093	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
152803	chr22	21845971	21846330	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	21495	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
221727	chr8	127565671	127566030	+	0	NA	Intergenic	MIR3|SINE|MIR	-83711	NR_117100	727677		NR_024393	ENSG00000246228	CASC8	CARLO1|CARLo-1|LINC00860	cancer susceptibility 8	ncRNA
210439	chr7	100099201	100099600	+	0	NA	exon (NM_005916, exon 4 of 15)	exon (NM_005916, exon 4 of 15)	1380	NM_182776	4176		NM_005916	ENSG00000166508	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146|PPP1R104	minichromosome maintenance complex component 7	protein-coding
48057	chr12	7075651	7075750	+	0	NA	Intergenic	Intergenic	14982	NM_001346850	716		NM_001734	ENSG00000182326	C1S	EDSPD2	complement C1s	protein-coding
2606	chr1	9950271	9950780	+	0	NA	TTS (NR_158969)	TTS (NR_158969)	7050	NM_001297779	64802		NM_022787	ENSG00000173614	NMNAT1	LCA9|NMNAT|PNAT1|SHILCA	nicotinamide nucleotide adenylyltransferase 1	protein-coding
230122	chr9	127714651	127716380	+	0	NA	promoter-TSS (NM_001317037)	promoter-TSS (NM_001317037)	148	NM_001002913	138428		NM_001002913	ENSG00000187024	PTRH1	C9orf115|PTH1	peptidyl-tRNA hydrolase 1 homolog	protein-coding
62469	chr13	99370351	99371200	+	0	NA	intron (NR_026644, intron 8 of 8)	intron (NR_026644, intron 8 of 8)	14644	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
73821	chr15	48966351	48967050	+	0	NA	Intergenic	MIR|SINE|MIR	-2781	NM_203349	399694		NM_203349	ENSG00000185634	SHC4	RaLP|SHCD	SHC adaptor protein 4	protein-coding
201072	chr6	142729171	142729430	+	0	NA	Intergenic	Intergenic	-91411	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
8172	chr1	39555301	39555700	+	0	NA	intron (NR_144357, intron 3 of 11)	intron (NR_144357, intron 3 of 11)	4198	NR_003929	728448		NR_003929	ENSG00000291129	PPIEL	PPIEP1	peptidylprolyl isomerase E like (pseudogene)	pseudo
34194	chr10	128464451	128464600	+	0	NA	Intergenic	Intergenic	178575	NR_120619	101927381		NR_120619	ENSG00000280953	LINC01163	TCONS_00017722	long intergenic non-protein coding RNA 1163	ncRNA
38630	chr11	46351101	46351580	+	0	NA	intron (NM_001199266, intron 1 of 30)	intron (NM_001199266, intron 1 of 30)	3877	NM_001199268	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
90625	chr17	1647451	1647550	+	0	NA	intron (NM_031430, intron 6 of 7)	intron (NM_031430, intron 6 of 7)	-1768	NM_003693	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
141328	chr2	240559651	240560400	+	0	NA	promoter-TSS (NM_001033575)	promoter-TSS (NM_001033575)	-29	NM_001033575	285193		NM_001033575	ENSG00000188542	DUSP28	DUSP26|VHP	dual specificity phosphatase 28	protein-coding
233690	chrX	1181101	1181850	+	0	NA	Intergenic	AluSx|SINE|Alu	31174	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
41068	chr11	65500201	65501100	+	0	NA	non-coding (NR_002819, exon 1 of 1)	non-coding (NR_002819, exon 1 of 1)	2912	NR_144568	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
1933	chr1	6489621	6490330	+	0	NA	intron (NM_198681, intron 2 of 21)	intron (NM_198681, intron 2 of 21)	605	NM_001265594	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
40766	chr11	64857521	64858030	+	0	NA	intron (NM_001282444, intron 5 of 6)	intron (NM_001282444, intron 5 of 6)	-13122	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
170992	chr3	194645371	194645680	+	0	NA	intron (NM_018385, intron 12 of 13)	(AC)n|Simple_repeat|Simple_repeat	-12106	NM_138399	93109		NM_138399	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
8681	chr1	41917171	41917430	+	0	NA	intron (NR_038260, intron 1 of 2)	intron (NR_038260, intron 1 of 2)	1622	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
133196	chr2	113084171	113084450	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	11992	NM_032556	84639		NM_032556	ENSG00000136697	IL1F10	FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2	interleukin 1 family member 10	protein-coding
29842	chr10	72341551	72341730	+	0	NA	intron (NR_157570, intron 3 of 8)	AluJo|SINE|Alu	13279	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
109055	chr18	79807971	79808130	+	0	NA	Intergenic	CpG	-55618	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
149277	chr21	26843251	26843880	+	0	NA	intron (NM_006988, intron 1 of 8)	intron (NM_006988, intron 1 of 8)	1844	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
127795	chr2	44237251	44238200	+	0	NA	Intergenic	Intergenic	-37755	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
38727	chr11	46700151	46701550	+	0	NA	promoter-TSS (NM_024741)	promoter-TSS (NM_024741)	-181	NM_024741	79797		NM_024741	ENSG00000175213	ZNF408	EVR6|RP72	zinc finger protein 408	protein-coding
25613	chr10	8069221	8069850	+	0	NA	exon (NM_002051, exon 5 of 6)	exon (NM_002051, exon 5 of 6)	14847	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
64721	chr14	34371051	34371150	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	91140	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
10390	chr1	65049551	65050450	+	0	NA	intron (NM_001321853, intron 2 of 26)	LTR78B|LTR|ERV1	7842	NR_037443	100500854		NR_037443	ENSG00000265996	MIR3671	-	microRNA 3671	ncRNA
87150	chr16	69286721	69287700	+	0	NA	intron (NM_006750, intron 5 of 6)	intron (NM_006750, intron 5 of 6)	-24140	NM_013245	27183		NM_013245	ENSG00000132612	VPS4A	CIMDAG|SKD1|SKD1A|SKD2|VPS4|VPS4-1	vacuolar protein sorting 4 homolog A	protein-coding
103808	chr17	79087101	79088030	+	0	NA	3' UTR (NM_001042573, exon 14 of 14)	3' UTR (NM_001042573, exon 14 of 14)	12741	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
231124	chr9	129832701	129833250	+	0	NA	intron (NM_016520, intron 4 of 8)	(TG)n|Simple_repeat|Simple_repeat	2300	NM_016520	51759		NM_016520	ENSG00000136819	C9orf78	CSU2|HCA59|HSPC220|TLS1|bA409K20.3	chromosome 9 open reading frame 78	protein-coding
226861	chr9	78034201	78034400	+	0	NA	Intergenic	L2c|LINE|L2	-2489	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
179519	chr4	184817951	184818750	+	0	NA	intron (NM_001381885, intron 1 of 21)	intron (NM_001381885, intron 1 of 21)	-3226	NM_001381879	2180		NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long chain family member 1	protein-coding
11836	chr1	92952001	92952200	+	0	NA	intron (NM_001006605, intron 1 of 4)	MER20|DNA|hAT-Charlie	9362	NM_001006605	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
97681	chr17	44279721	44280000	+	0	NA	Intergenic	Intergenic	-11725	NM_000342	6521		NM_000342	ENSG00000004939	SLC4A1	AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR	solute carrier family 4 member 1 (Diego blood group)	protein-coding
3740	chr1	16636771	16637800	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6379	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
200074	chr6	130120771	130121200	+	0	NA	intron (NM_001007102, intron 19 of 21)	intron (NM_001007102, intron 19 of 21)	94900	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
108123	chr18	62328371	62328730	+	0	NA	intron (NM_001270950, intron 1 of 7)	intron (NM_001270950, intron 1 of 7)	3240	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
165611	chr3	101683051	101683150	+	0	NA	intron (NM_000986, intron 3 of 5)	intron (NM_000986, intron 3 of 5)	3618	NM_000986	6152		NM_000986	ENSG00000114391	RPL24	HEL-S-310|L24|eL24	ribosomal protein L24	protein-coding
10365	chr1	64948901	64950080	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	17059	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
2490	chr1	9681001	9681800	+	0	NA	intron (NR_126368, intron 1 of 1)	AluJr|SINE|Alu	6174	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
46502	chr11	128379471	128380030	+	0	NA	Intergenic	Intergenic	142560	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
225006	chr9	33123871	33124380	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	15433	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
99846	chr17	55421501	55423280	+	0	NA	promoter-TSS (NM_012329)	promoter-TSS (NM_012329)	-555	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
140055	chr2	231395351	231396650	+	0	NA	intron (NM_145236, intron 1 of 1)	CpG	290	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
100277	chr17	59641351	59641450	+	0	NA	intron (NM_004859, intron 1 of 31)	AluSx3|SINE|Alu	21505	NM_004859	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
217727	chr8	30648201	30648750	+	0	NA	intron (NM_001348353, intron 2 of 6)	MLT1I|LTR|ERVL-MaLR	9143	NM_001348353	2961		NM_002095	ENSG00000197265	GTF2E2	FE|TF2E2|TFIIE-B|TTD6	general transcription factor IIE subunit 2	protein-coding
230279	chr9	127926921	127929300	+	0	NA	promoter-TSS (NM_173492)	promoter-TSS (NM_173492)	-619	NM_173492	138429		NM_173492	ENSG00000167103	PIP5KL1	PIPKH	phosphatidylinositol-4-phosphate 5-kinase like 1	protein-coding
175381	chr4	70692071	70692450	+	0	NA	Intergenic	AluSx3|SINE|Alu	3728	NM_020368	57050		NM_020368	ENSG00000132467	UTP3	CRL1|CRLZ1|SAS10	UTP3 small subunit processome component	protein-coding
189125	chr5	170633771	170633930	+	0	NA	intron (NM_014592, intron 1 of 7)	L2a|LINE|L2	47620	NR_136214	105377716		NR_136214	ENSG00000253591	KCNIP1-AS1	-	KCNIP1 antisense RNA 1	ncRNA
142353	chr20	3763771	3764130	+	0	NA	intron (NR_047675, intron 1 of 5)	intron (NR_047675, intron 1 of 5)	3803	NM_001258430	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
193374	chr6	30340671	30341030	+	0	NA	intron (NM_001369523, intron 8 of 8).5	intron (NM_001369523, intron 8 of 8).5	-4306	NM_024839	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
226605	chr9	73161871	73162230	+	0	NA	intron (NM_000700, intron 6 of 12)	MSTB1|LTR|ERVL-MaLR	10185	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
166239	chr3	112143301	112144050	+	0	NA	intron (NM_183061, intron 28 of 28)	L1PA16|LINE|L1	10252	NR_157393	112806053		NR_157393	ENSG00000261488	TBILA	-	TGF-beta induced lncRNA	ncRNA
64883	chr14	35365451	35366200	+	0	NA	Intergenic	Intergenic	38924	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
8212	chr1	39675171	39675730	+	0	NA	Intergenic	Intergenic	-3412	NM_032526	84618		NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
169360	chr3	160409901	160410330	+	0	NA	intron (NM_005496, intron 4 of 22)	intron (NM_005496, intron 4 of 22)	5370	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
184282	chr5	96802851	96803150	+	0	NA	intron (NM_001349244, intron 2 of 19)	MLT1C|LTR|ERVL-MaLR	4945	NM_001040458	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
9134	chr1	45489321	45489780	+	0	NA	intron (NM_007170, intron 1 of 10)	AluSx|SINE|Alu	1613	NM_007170	10420		NM_007170	ENSG00000070759	TESK2	-	testis associated actin remodelling kinase 2	protein-coding
53326	chr12	64618951	64619400	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-3334	NR_030347	693129		NR_030347	ENSG00000207546	MIR548C	MIRN548C	microRNA 548c	ncRNA
184913	chr5	112914571	112914730	+	0	NA	intron (NM_005669, intron 2 of 4)	intron (NM_005669, intron 2 of 4)	7577	NM_005669	7905		NM_005669	ENSG00000129625	REEP5	C5orf18|D5S346|DP1|POB16|TB2|YOP1|Yip2e	receptor accessory protein 5	protein-coding
188053	chr5	149962151	149962680	+	0	NA	intron (NM_000112, intron 1 of 2)	AluJb|SINE|Alu	1657	NM_000112	1836		NM_000112	ENSG00000155850	SLC26A2	D5S1708|DTD|DTDST|EDM4|MST153|MSTP157	solute carrier family 26 member 2	protein-coding
44573	chr11	108233271	108233930	+	0	NA	intron (NM_000051, intron 4 of 62)	intron (NM_000051, intron 4 of 62)	10071	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
62593	chr13	100001601	100002400	+	0	NA	Intergenic	AluY|SINE|Alu	-4091	NR_047483	100861542		NR_047483	ENSG00000260738	LINC00554	lncZic2	long intergenic non-protein coding RNA 554	ncRNA
226955	chr9	79810271	79810630	+	0	NA	Intergenic	Intergenic	-14080	NR_121213	101927477		NR_121212		LINC01507	XLOC_000303	long intergenic non-protein coding RNA 1507	ncRNA
214841	chr7	151287171	151287530	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-10201	NM_003078	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
129698	chr2	70645071	70645230	+	0	NA	Intergenic	Intergenic	-91324	NM_003236	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
196383	chr6	43266851	43267550	+	0	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	23719	NM_032538	84630		NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding
162921	chr3	49426571	49426730	+	0	NA	intron (NM_032316, intron 1 of 5)	AluSx|SINE|Alu	2674	NM_032316	84276		NM_032316	ENSG00000145029	NICN1	-	nicolin 1, tubulin polyglutamylase complex subunit	protein-coding
233946	chrX	2505671	2505830	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4774	NM_145177	207063		NM_145177	ENSG00000169084	DHRSX	CXorf11|DHRS5X|DHRS5Y|DHRSXY|DHRSY|SDR46C1|SDR7C6	dehydrogenase/reductase X-linked	protein-coding
2000	chr1	6738871	6739530	+	0	NA	Intergenic	Intergenic	11673	NR_104621	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
177691	chr4	121868571	121868930	+	0	NA	intron (NM_176824, intron 1 of 18)	intron (NM_176824, intron 1 of 18)	1724	NM_176824	55212		NM_018190	ENSG00000138686	BBS7	BBS2L1	Bardet-Biedl syndrome 7	protein-coding
30902	chr10	87045601	87046000	+	0	NA	Intergenic	AluSx4|SINE|Alu	25506	NM_001146157	643161		NM_001146157	ENSG00000188100	FAM25A	bA96C23.5	family with sequence similarity 25 member A	protein-coding
201147	chr6	142911971	142912380	+	0	NA	intron (NM_006734, intron 1 of 9)	MER3|DNA|hAT-Charlie	33001	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
131149	chr2	91517151	91517550	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	142599	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
124417	chr19	58452971	58453130	+	0	NA	intron (NM_207395, intron 1 of 3)	AluY|SINE|Alu	1428	NM_207395	388569		NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
83517	chr16	27454521	27454780	+	0	NA	Intergenic	AluSx|SINE|Alu	-1257	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
119443	chr19	40403201	40403800	+	0	NA	intron (NM_020956, intron 5 of 5)	MIR|SINE|MIR	9864	NM_020956	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
232275	chr9	134430971	134431330	+	0	NA	intron (NM_001291921, intron 6 of 8)	intron (NM_001291921, intron 6 of 8)	24590	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
82708	chr16	20806261	20807680	+	0	NA	promoter-TSS (NM_001142725)	promoter-TSS (NM_001142725)	443	NM_001144924	81691		NM_030941	ENSG00000005189	REXO5	NEF-sp	RNA exonuclease 5	protein-coding
178973	chr4	162163951	162164250	+	0	NA	promoter-TSS (NM_001128428)	promoter-TSS (NM_001128428)	-66	NM_001128428	56884		NM_020116	ENSG00000168843	FSTL5	-	follistatin like 5	protein-coding
36073	chr11	2984551	2984850	+	0	NA	intron (NM_001369380, intron 1 of 14).2	intron (NM_001369380, intron 1 of 14).2	6403	NM_001369379	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
142059	chr20	2006701	2006900	+	0	NA	intron (NR_134520, intron 3 of 3)	intron (NR_134520, intron 3 of 3)	-12515	NM_001190899	5173		NM_024411	ENSG00000101327	PDYN	ADCA|PENKB|SCA23	prodynorphin	protein-coding
51875	chr12	53492401	53495630	+	0	NA	intron (NM_006301, intron 1 of 14)	intron (NM_006301, intron 1 of 14)	5443	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
21126	chr1	203643851	203644150	+	0	NA	intron (NM_001365784, intron 1 of 20)	AluSx1|SINE|Alu	16063	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
30371	chr10	78030971	78031300	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1620	NM_007055	11128		NM_007055	ENSG00000148606	POLR3A	ADDH|C160|HLD7|RPC1|RPC155|WDRTS|hRPC155	RNA polymerase III subunit A	protein-coding
22522	chr1	221829451	221830550	+	0	NA	intron (NR_125989, intron 3 of 3)	intron (NR_125989, intron 3 of 3)	10666	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
111478	chr19	3953871	3954650	+	0	NA	Intergenic	Intergenic	7252	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
118675	chr19	37778821	37780450	+	0	NA	promoter-TSS (NM_001172691)	promoter-TSS (NM_001172691)	-45	NM_001172691	126231		NM_152360	ENSG00000189144	ZNF573	-	zinc finger protein 573	protein-coding
90272	chr17	993401	993600	+	0	NA	Intergenic	Intergenic	-3629	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
155344	chr22	38231351	38231850	+	0	NA	intron (NM_001195071, intron 3 of 8)	intron (NM_001195071, intron 3 of 8)	-6880	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
36286	chr11	3807471	3808770	+	0	NA	promoter-TSS (NM_001256239)	promoter-TSS (NM_001256239)	110	NM_001346403	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
205965	chr7	26162501	26163200	+	0	NA	intron (NM_004289, intron 1 of 3)	AluJb|SINE|Alu	10652	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
131092	chr2	89585301	89585820	+	0	NA	non-coding (NR_160761, exon 1 of 3)	non-coding (NR_160761, exon 1 of 3)	105	NR_160761	107985911		NR_160761	ENSG00000290846	LOC107985911	-	lymphocyte specific protein 1 pseudogene	pseudo
196089	chr6	42313901	42314200	+	0	NA	intron (NM_033502, intron 3 of 17)	intron (NM_033502, intron 3 of 17)	-96189	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
37483	chr11	18392301	18392950	+	0	NA	Intergenic	Intergenic	-1764	NM_001165416	3939		NM_005566	ENSG00000134333	LDHA	GSD11|HEL-S-133P|LDHM|PIG19	lactate dehydrogenase A	protein-coding
188359	chr5	151756421	151756930	+	0	NA	intron (NM_004045, intron 1 of 3)	AluJb|SINE|Alu	1956	NM_004045	475		NM_004045	ENSG00000177556	ATOX1	ATX1|HAH1	antioxidant 1 copper chaperone	protein-coding
129666	chr2	70264871	70265030	+	0	NA	intron (NM_016297, intron 3 of 5)	AluSz|SINE|Alu	6813	NM_016297	51449		NM_016297	ENSG00000116005	PCYOX1	PCL1	prenylcysteine oxidase 1	protein-coding
171272	chr3	195873501	195873700	+	0	NA	intron (NM_005781, intron 9 of 14)	intron (NM_005781, intron 9 of 14)	8795	NR_106887	102465977		NR_106887	ENSG00000276489	MIR6829	hsa-mir-6829	microRNA 6829	ncRNA
229160	chr9	114498551	114498900	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	4490	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
24983	chr10	3085021	3085700	+	0	NA	intron (NM_001345944, intron 2 of 21)	intron (NM_001345944, intron 2 of 21)	16171	NM_001345944	5214		NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
133168	chr2	112763951	112765500	+	0	NA	promoter-TSS (NM_152515)	promoter-TSS (NM_152515)	-116	NR_130712	150468		NM_152515	ENSG00000169607	CKAP2L	-	cytoskeleton associated protein 2 like	protein-coding
147157	chr20	56420151	56420250	+	0	NA	intron (NM_001164114, intron 1 of 5)	intron (NM_001164114, intron 1 of 5)	7940	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
13433	chr1	114333601	114333800	+	0	NA	Intergenic	Intergenic	177503	NM_015906	51592		NM_015906	ENSG00000197323	TRIM33	ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA	tripartite motif containing 33	protein-coding
34002	chr10	124687401	124687680	+	0	NA	intron (NM_014661, intron 3 of 4)	intron (NM_014661, intron 3 of 4)	-16488	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
132451	chr2	105858301	105858500	+	0	NA	intron (NM_001004722, intron 3 of 3)	AluJb|SINE|Alu	6553	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
20276	chr1	194713751	194713930	+	0	NA	Intergenic	AluYj4|SINE|Alu	1374875	NR_146895	105371673		NR_146895		LINC01724	-	long intergenic non-protein coding RNA 1724	ncRNA
92526	chr17	8927421	8927880	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	-15133	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
146747	chr20	50804571	50806530	+	0	NA	intron (NM_198799, intron 1 of 4)	MER102b|DNA|hAT-Charlie	10489	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
57288	chr12	121642001	121643050	+	0	NA	TTS (NM_032790)	TTS (NM_032790)	15975	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
6480	chr1	28363121	28363580	+	0	NA	Intergenic	Intergenic	-6390	NM_001350161	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
91122	chr17	3691971	3692430	+	0	NA	intron (NM_002561, intron 1 of 11)	AluY|SINE|Alu	3955	NM_001204519	5026		NM_002561	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X 5	protein-coding
199064	chr6	111604101	111604530	+	0	NA	intron (NM_147200, intron 1 of 9)	intron (NM_147200, intron 1 of 9)	1563	NM_147686	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
82342	chr16	15952401	15953100	+	0	NA	intron (NM_004996, intron 1 of 30)	AluSz6|SINE|Alu	3134	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
38915	chr11	47422751	47423250	+	0	NA	intron (NM_002804, intron 6 of 11)	intron (NM_002804, intron 6 of 11)	3439	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
26381	chr10	16828101	16828800	+	0	NA	intron (NM_001081, intron 66 of 66)	AluSq2|SINE|Alu	-10996	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
210876	chr7	101152671	101153230	+	0	NA	Intergenic	AluJo|SINE|Alu	-1526	NM_001283	1174		NM_001283	ENSG00000106367	AP1S1	AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A	adaptor related protein complex 1 subunit sigma 1	protein-coding
124591	chr2	860751	861200	+	0	NA	intron (NR_033880, intron 1 of 3)	intron (NR_033880, intron 1 of 3)	7451	NR_111963	339822		NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA
69942	chr14	99628601	99629430	+	0	NA	intron (NM_001329411, intron 2 of 8)	intron (NM_001329411, intron 2 of 8)	-16095	NM_032425	84439		NM_032425	ENSG00000182218	HHIPL1	KIAA1822|UNQ9245	HHIP like 1	protein-coding
163070	chr3	49947001	49947200	+	0	NA	intron (NR_146071, intron 1 of 15)	AluY|SINE|Alu	6950	NM_001349194	10180		NM_005777	ENSG00000004534	RBM6	3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16	RNA binding motif protein 6	protein-coding
231999	chr9	133351171	133351580	+	0	NA	TTS (NM_003172)	TTS (NM_003172)	529	NR_000016	26813		NR_000016	ENSG00000252542	SNORD36C	RNU36C|U36c	small nucleolar RNA, C/D box 36C	snoRNA
57939	chr12	123635501	123635700	+	0	NA	intron (NM_001271867, intron 1 of 11)	AluJo|SINE|Alu	1771	NM_001271867	2967		NM_001516	ENSG00000111358	GTF2H3	BTF2|P34|TFB4|TFIIH	general transcription factor IIH subunit 3	protein-coding
101997	chr17	74767071	74767430	+	0	NA	intron (NM_004252, intron 4 of 5)	intron (NM_004252, intron 4 of 5)	9095	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
205851	chr7	24922921	24923180	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	-30429	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
6823	chr1	30986901	30987350	+	0	NA	intron (NM_014676, intron 7 of 21)	intron (NM_014676, intron 7 of 21)	-18888	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
20083	chr1	186330721	186331000	+	0	NA	intron (NM_003292, intron 39 of 50)	L2c|LINE|L2	34581	NM_005807	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
200938	chr6	139163821	139165400	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	29530	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
151154	chr21	44923021	44924080	+	0	NA	intron (NR_038311, intron 2 of 4)	L1MC5|LINE|L1	2515	NR_038315	100505746		NR_038311	ENSG00000227039	ITGB2-AS1	-	ITGB2 antisense RNA 1	ncRNA
88817	chr16	87407621	87408430	+	0	NA	3' UTR (NM_015144, exon 13 of 13)	3' UTR (NM_015144, exon 13 of 13)	15689	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
233979	chrX	2706201	2706630	+	0	NA	intron (NR_135623, intron 1 of 10)	intron (NR_135623, intron 1 of 10)	15120	NM_001321368	4267		NM_002414	ENSG00000002586	CD99	HBA71|MIC2|MIC2X|MIC2Y|MSK5X	CD99 molecule (Xg blood group)	protein-coding
103977	chr17	79999301	79999500	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	36472	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
21058	chr1	203286601	203288030	+	0	NA	promoter-TSS (NR_117098)	promoter-TSS (NR_117098)	163	NR_117097	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
20756	chr1	200991071	200991580	+	0	NA	intron (NM_017596, intron 17 of 33)	intron (NM_017596, intron 17 of 33)	32389	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
236917	chrX	89204201	89204400	+	0	NA	Intergenic	Intergenic	457075	NM_001184771	53336		NM_033048	ENSG00000147183	CPXCR1	CT77	CPX chromosome region candidate 1	protein-coding
120599	chr19	45020971	45022000	+	0	NA	intron (NM_006509, intron 3 of 10)	intron (NM_006509, intron 3 of 10)	-17560	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
106919	chr18	26175371	26175780	+	0	NA	intron (NM_144662, intron 4 of 6)	LTR16A|LTR|ERVL	41706	NM_001308188	143471		NM_144662	ENSG00000154611	PSMA8	PSMA7L	proteasome 20S subunit alpha 8	protein-coding
39123	chr11	48116751	48117150	+	0	NA	intron (NM_002843, intron 3 of 24)	intron (NM_002843, intron 3 of 24)	20168	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
14920	chr1	147515401	147515730	+	0	NA	non-coding (NR_038423, exon 2 of 4)	non-coding (NR_038423, exon 2 of 4)	2310	NR_038423	100289211		NR_038423	ENSG00000278811	LINC00624	-	long intergenic non-protein coding RNA 624	ncRNA
194872	chr6	34609571	34610280	+	0	NA	intron (NM_022758, intron 2 of 3)	AluY|SINE|Alu	-53592	NM_001252294	25803		NM_012391	ENSG00000124664	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding
161090	chr3	38140371	38140530	+	0	NA	exon (NM_002468, exon 3 of 5)	exon (NM_002468, exon 3 of 5)	699	NR_164663	4615		NM_002468	ENSG00000172936	MYD88	IMD68|MYD88D|WM1	MYD88 innate immune signal transduction adaptor	protein-coding
48441	chr12	9703271	9703430	+	0	NA	Intergenic	Intergenic	29949	NM_001267701	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
55690	chr12	107663271	107663430	+	0	NA	Intergenic	Intergenic	-22382	NM_001317963	11137		NM_007062	ENSG00000136045	PWP1	IEF-SSP-9502|NCLB	PWP1 homolog, endonuclein	protein-coding
3672	chr1	16484151	16484480	+	0	NA	non-coding (NR_023386, exon 9 of 15)	non-coding (NR_023386, exon 9 of 15)	8386	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
35227	chr11	829351	829450	+	0	NA	exon (NM_001286606, exon 3 of 9)	exon (NM_001286606, exon 3 of 9)	1140	NM_173584	283229		NM_173584	ENSG00000177685	CRACR2B	EFCAB4A	calcium release activated channel regulator 2B	protein-coding
53096	chr12	57753801	57756300	+	0	NA	promoter-TSS (NM_138396)	promoter-TSS (NM_138396)	-53	NM_138396	92979		NM_138396	ENSG00000139266	MARCHF9	MARCH-IX|MARCH9|RNF179	membrane associated ring-CH-type finger 9	protein-coding
205357	chr7	13558101	13558300	+	0	NA	Intergenic	Intergenic	428314	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
129912	chr2	73268701	73269850	+	0	NA	exon (NM_001080410, exon 6 of 17)	exon (NM_001080410, exon 6 of 17)	15203	NM_001371389	150726		NM_001080410	ENSG00000163013	FBXO41	FBX41	F-box protein 41	protein-coding
135359	chr2	160412101	160412850	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	-4593	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
166167	chr3	111617771	111618380	+	0	NA	intron (NR_134917, intron 8 of 14)	MER52A|LTR|ERV1	-22729	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
71350	chr14	105467121	105467580	+	0	NA	intron (NM_001203258, intron 18 of 20)	intron (NM_001203258, intron 18 of 20)	-5595	NR_073082	1397		NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding
143133	chr20	23669621	23670080	+	0	NA	Intergenic	(CATCAC)n|Simple_repeat|Simple_repeat	19188	NM_001899	1472		NM_001899	ENSG00000101441	CST4	-	cystatin S	protein-coding
215748	chr8	1952221	1952700	+	0	NA	intron (NM_001308152, intron 26 of 27)	intron (NM_001308152, intron 26 of 27)	-18937	NR_126346	104266957		NR_126346	ENSG00000253696	KBTBD11-OT1	-	KBTBD11 overlapping transcript 1	ncRNA
156775	chr22	41894371	41894530	+	0	NA	intron (NR_103834, intron 13 of 21)	intron (NR_103834, intron 13 of 21)	-6494	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
7599	chr1	35197251	35197700	+	0	NA	Intergenic	AluY|SINE|Alu	-4330	NM_005066	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
230246	chr9	127886501	127886850	+	0	NA	exon (NM_013443, exon 7 of 7)	exon (NM_013443, exon 7 of 7)	-7054	NM_001318121	203		NM_000476	ENSG00000106992	AK1	HTL-S-58j	adenylate kinase 1	protein-coding
160388	chr3	28007651	28007750	+	0	NA	Intergenic	Intergenic	-173564	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
129283	chr2	68432271	68432630	+	0	NA	Intergenic	MER52D|LTR|ERV1	34844	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
75417	chr15	65776871	65777600	+	0	NA	intron (NM_001376919, intron 1 of 31)	intron (NM_001376919, intron 1 of 31)	15058	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
110824	chr19	2485651	2485750	+	0	NA	Intergenic	Intergenic	9573	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
55665	chr12	107355101	107355300	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	34612	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
64130	chr14	22858171	22859130	+	0	NA	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-13090	NM_014045	26020		NM_014045	ENSG00000197324	LRP10	LRP-10|LRP9|MST087|MSTP087	LDL receptor related protein 10	protein-coding
90752	chr17	2043501	2043900	+	0	NA	TTS (NR_144476)	TTS (NR_144476)	1678	NM_080822	124641		NM_080822	ENSG00000262664	OVCA2	-	OVCA2 serine hydrolase domain containing	protein-coding
173292	chr4	7073321	7074180	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-5686	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
153685	chr22	29121001	29121400	+	0	NA	intron (NM_001039570, intron 3 of 8)	intron (NM_001039570, intron 3 of 8)	48165	NM_032045	83999		NM_032045	ENSG00000183762	KREMEN1	ECTD13|KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
68694	chr14	90404221	90404630	+	0	NA	exon (NM_001363670, exon 5 of 6)	exon (NM_001363670, exon 5 of 6)	6175	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
164925	chr3	71190851	71191150	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	54077	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
170618	chr3	187006871	187007330	+	0	NA	intron (NM_173216, intron 2 of 7)	L1MEf|LINE|L1	-14755	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
212370	chr7	127771871	127772030	+	0	NA	intron (NM_014390, intron 10 of 23)	intron (NM_014390, intron 10 of 23)	119756	NM_014390	27044		NM_014390	ENSG00000197157	SND1	TDRD11|TSN|Tudor-SN|p100	staphylococcal nuclease and tudor domain containing 1	protein-coding
10020	chr1	55257701	55258400	+	0	NA	Intergenic	Intergenic	32409	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA
133072	chr2	112428321	112429050	+	0	NA	intron (NM_005054, intron 1 of 22).3	HAL1|LINE|L1	4929	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
60382	chr13	40942551	40943000	+	0	NA	intron (NM_001370329, intron 8 of 9)	AluJb|SINE|Alu	-21001	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
206012	chr7	26290521	26290950	+	0	NA	Intergenic	Intergenic	-1127	NM_013322	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
212845	chr7	130759521	130759780	+	0	NA	Intergenic	AluSq2|SINE|Alu	-25443	NM_138693	136259		NM_138693	ENSG00000266265	KLF14	BTEB5	KLF transcription factor 14	protein-coding
146592	chr20	50114001	50114530	+	0	NA	intron (NM_199203, intron 5 of 7)	intron (NM_199203, intron 5 of 7)	-1067	NM_001282580	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
183830	chr5	86615601	86616000	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-2141	NM_001867	1350		NM_001867	ENSG00000127184	COX7C	-	cytochrome c oxidase subunit 7C	protein-coding
223729	chr8	144473801	144474100	+	0	NA	3' UTR (NM_001369769, exon 18 of 18)	3' UTR (NM_001369769, exon 18 of 18)	1899	NM_003923	8928		NM_003923	ENSG00000160973	FOXH1	FAST-1|FAST1	forkhead box H1	protein-coding
39788	chr11	61952701	61953030	+	0	NA	intron (NR_134580, intron 2 of 10)	AluJb|SINE|Alu	-2370	NM_001363593	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
60518	chr13	41380701	41380900	+	0	NA	Intergenic	L1MA10|LINE|L1	-61764	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
127822	chr2	44939771	44940450	+	0	NA	promoter-TSS (NR_147195)	promoter-TSS (NR_147195)	-911	NR_147195	107985879		NR_147194	ENSG00000259439	LINC01833	K21.1|RP11-89	long intergenic non-protein coding RNA 1833	ncRNA
113498	chr19	10090501	10091530	+	0	NA	intron (NM_018381, intron 5 of 7)	MER63B|DNA|hAT-Blackjack	4698	NM_001308277	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
153418	chr22	24985601	24986000	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-39105	NM_001001663	255349		NM_001001663	ENSG00000206069	LHFPL7	TMEM211|bA9F11.1	LHFPL tetraspan subfamily member 7	protein-coding
175506	chr4	74016151	74016400	+	0	NA	Intergenic	Intergenic	-17598	NM_002994	6374		NM_002994	ENSG00000163735	CXCL5	ENA-78|SCYB5	C-X-C motif chemokine ligand 5	protein-coding
33442	chr10	119028171	119028330	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1464	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
9296	chr1	46448321	46449030	+	0	NA	intron (NR_121680, intron 1 of 2)	intron (NR_121680, intron 1 of 2)	1029	NR_121680	101929651		NR_121680	ENSG00000224863	LINC01398	-	long intergenic non-protein coding RNA 1398	ncRNA
169113	chr3	155805251	155806530	+	0	NA	intron (NM_173657, intron 1 of 5)	intron (NM_173657, intron 1 of 5)	388	NM_001308229	285315		NM_173657	ENSG00000174928	C3orf33	AC3-33	chromosome 3 open reading frame 33	protein-coding
15908	chr1	151654071	151654430	+	0	NA	intron (NM_030918, intron 2 of 11)	L1MB7|LINE|L1	42200	NM_030918	81609		NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin 27	protein-coding
198097	chr6	90286951	90287480	+	0	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	9628	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
229019	chr9	113807401	113807700	+	0	NA	Intergenic	Intergenic	-68732	NM_001318040	114991		NM_133374	ENSG00000157657	ZNF618	FP13169|NEDD10	zinc finger protein 618	protein-coding
170485	chr3	186060271	186060650	+	0	NA	intron (NM_004454, intron 9 of 12)	intron (NM_004454, intron 9 of 12)	48629	NM_004454	2119		NM_004454	ENSG00000244405	ETV5	ERM	ETS variant transcription factor 5	protein-coding
88034	chr16	81370171	81370330	+	0	NA	intron (NM_022041, intron 9 of 10)	ERVL-E-int|LTR|ERVL	-14768	NR_039871	100616150		NR_039871	ENSG00000284473	MIR4720	-	microRNA 4720	ncRNA
225494	chr9	35652121	35652880	+	0	NA	Intergenic	AluJr|SINE|Alu	-1569	NM_014450	27240		NM_014450	ENSG00000137078	SIT1	SIT|SIT-R	signaling threshold regulating transmembrane adaptor 1	protein-coding
57106	chr12	121076871	121077030	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-37708	NM_198213	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
186462	chr5	137857901	137858430	+	0	NA	Intergenic	Intergenic	-9695	NM_001135940	9499		NM_006790	ENSG00000120729	MYOT	LGMD1|LGMD1A|MFM3|TTID|TTOD	myotilin	protein-coding
197890	chr6	89300071	89300230	+	0	NA	intron (NM_002043, intron 1 of 8)	intron (NM_002043, intron 1 of 8)	15149	NM_002043	2570		NM_002043	ENSG00000111886	GABRR2	-	gamma-aminobutyric acid type A receptor subunit rho2	protein-coding
212527	chr7	128836851	128837150	+	0	NA	intron (NM_001458, intron 2 of 47)	intron (NM_001458, intron 2 of 47)	6594	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
123643	chr19	54676301	54676580	+	0	NA	Intergenic	Intergenic	13621	NM_001278428	11006		NM_006847	ENSG00000186818	LILRB4	B4|CD85K|ILT-3|ILT3|LIR-5|LIR5	leukocyte immunoglobulin like receptor B4	protein-coding
210849	chr7	101086671	101086830	+	0	NA	intron (NM_030961, intron 1 of 2)	intron (NM_030961, intron 1 of 2)	1269	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
175887	chr4	80068801	80069200	+	0	NA	intron (NM_001145794, intron 3 of 15)	intron (NM_001145794, intron 3 of 15)	4229	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
113466	chr19	9917451	9917550	+	0	NA	intron (NM_058164, intron 1 of 5)	LTR33A|LTR|ERVL	-3699	NM_001304347	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
173127	chr4	6608901	6609480	+	0	NA	exon (NM_001292038, exon 12 of 19)	exon (NM_001292038, exon 12 of 19)	-30901	NM_033296	93621		NM_033296	ENSG00000179010	MRFAP1	PAM14|PGR1	Morf4 family associated protein 1	protein-coding
143716	chr20	32270551	32270850	+	0	NA	Intergenic	Intergenic	-6951	NM_004798	9371		NM_004798	ENSG00000101350	KIF3B	FLA8|HH0048|KLP-11|OTSC12|RP89	kinesin family member 3B	protein-coding
234271	chrX	13387771	13387930	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	52609	NR_045260	100133123		NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA
191394	chr6	7948751	7948850	+	0	NA	intron (NR_037616, intron 4 of 12)	L1PA4|LINE|L1	-37302	NR_027712	206426		NM_152700		PIP5K1P1	-	phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1	pseudo
108770	chr18	77136201	77136600	+	0	NA	Intergenic	Intergenic	-3617	NM_001025101	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
214347	chr7	149489451	149490030	+	0	NA	intron (NM_152557, intron 4 of 6)	intron (NM_152557, intron 4 of 6)	8067	NM_001163474	155061		NM_152557	ENSG00000181220	ZNF746	PARIS	zinc finger protein 746	protein-coding
199408	chr6	116570701	116572830	+	0	NA	intron (NM_015952, intron 1 of 6)	CpG	261	NM_016104	51389		NM_015952	ENSG00000111832	RWDD1	CGI-24|PTD013	RWD domain containing 1	protein-coding
180156	chr5	1382951	1383250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3027	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
229313	chr9	120877201	120877840	+	0	NA	promoter-TSS (NM_001286843)	promoter-TSS (NM_001286843)	-332	NM_015651	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
204758	chr7	5595801	5597150	+	0	NA	intron (NM_003088, intron 1 of 4)	intron (NM_003088, intron 1 of 4)	3659	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
203238	chr6	168909371	168909550	+	0	NA	Intergenic	Intergenic	54922	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
149026	chr21	14581901	14582300	+	0	NA	promoter-TSS (NR_046512)	promoter-TSS (NR_046512)	-102	NR_046512	100874190		NR_046512	ENSG00000223662	SAMSN1-AS1	-	SAMSN1 antisense RNA 1	ncRNA
214223	chr7	148840271	148840500	+	0	NA	intron (NM_001203248, intron 3 of 19)	intron (NM_001203248, intron 3 of 19)	43100	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
172489	chr4	2243371	2243530	+	0	NA	Intergenic	Intergenic	-1329	NM_024511	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
32066	chr10	101087271	101087980	+	0	NA	Intergenic	Intergenic	21242	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
123744	chr19	55068251	55068550	+	0	NA	intron (NM_138412, intron 1 of 7).5	AluSx3|SINE|Alu	1120	NM_138412	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
122595	chr19	49745951	49746530	+	0	NA	intron (NM_021733, intron 6 of 10)	CpG	17066	NM_021733	60385		NM_021733	ENSG00000126467	TSKS	PPP1R161|STK22S1|TSKS1|TSSKS	testis specific serine kinase substrate	protein-coding
6573	chr1	28746571	28747200	+	0	NA	intron (NM_016258, intron 4 of 4)	AluSp|SINE|Alu	9945	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
81962	chr16	11863101	11863700	+	0	NA	Intergenic	AluY|SINE|Alu	-11858	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
139362	chr2	221463201	221463800	+	0	NA	intron (NM_004438, intron 5 of 17)	intron (NM_004438, intron 5 of 17)	108804	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
36495	chr11	6392171	6393400	+	0	NA	intron (NM_001365135, intron 2 of 4)	AluSc|SINE|Alu	2311	NR_027400	6609		NM_000543	ENSG00000166311	SMPD1	ASM|ASMASE|NPD	sphingomyelin phosphodiesterase 1	protein-coding
36801	chr11	9576321	9576630	+	0	NA	intron (NM_001143976, intron 3 of 10)	intron (NM_001143976, intron 3 of 10)	1788	NM_001143976	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
186575	chr5	138489801	138490480	+	0	NA	Intergenic	Intergenic	24661	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
52031	chr12	54001271	54001430	+	0	NA	intron (NM_006897, intron 1 of 1)	intron (NM_006897, intron 1 of 1)	1189	NM_006897	3225		NM_006897	ENSG00000180806	HOXC9	HOX3|HOX3B	homeobox C9	protein-coding
41994	chr11	67388121	67388580	+	0	NA	intron (NR_024469, intron 3 of 3)	AluSx|SINE|Alu	-3636	NM_004584	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
77546	chr15	84750621	84751230	+	0	NA	intron (NM_014630, intron 1 of 10)	L2a|LINE|L2	2333	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
73744	chr15	45307151	45307800	+	0	NA	Intergenic	Intergenic	-28253	NR_120335	101928414		NR_120335	ENSG00000259520	SLC28A2-AS1	-	SLC28A2 antisense RNA 1	ncRNA
47847	chr12	6612931	6614650	+	0	NA	Intergenic	Intergenic	-6411	NM_001273	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
95604	chr17	37510301	37510700	+	0	NA	intron (NM_007026, intron 1 of 2)	intron (NM_007026, intron 1 of 2)	20609	NM_007026	11072		NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
159245	chr3	12925651	12925950	+	0	NA	intron (NM_014869, intron 3 of 13)	intron (NM_014869, intron 3 of 13)	-40589	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
220188	chr8	95231171	95231530	+	0	NA	Intergenic	Intergenic	-14976	NR_046232	619344		NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
70331	chr14	101840851	101842200	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	31662	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
79959	chr16	1772801	1774580	+	0	NA	promoter-TSS (NM_001300900)	promoter-TSS (NM_001300900)	462	NM_001257370	197342		NM_001010865	ENSG00000197774	EME2	SLX2B|gs125	essential meiotic structure-specific endonuclease subunit 2	protein-coding
66237	chr14	61339121	61339480	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	17857	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
226367	chr9	70204471	70204800	+	0	NA	intron (NM_153267, intron 11 of 13)	L1PA2|LINE|L1	-28747	NR_040076	100507244		NR_040076	ENSG00000204706	MAMDC2-AS1	-	MAMDC2 antisense RNA 1	ncRNA
36108	chr11	3056851	3058080	+	0	NA	promoter-TSS (NM_001014437).2	promoter-TSS (NM_001014437).2	-42	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
100026	chr17	57985501	57985900	+	0	NA	intron (NM_001330393, intron 1 of 6)	intron (NM_001330393, intron 1 of 6)	2554	NM_001330393	7716		NM_007146	ENSG00000136451	VEZF1	CMD1OO|DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
76033	chr15	72198721	72199050	+	0	NA	TTS (NM_001206799)	TTS (NM_001206799)	-1098	NM_001012642	196996		NM_001012642	ENSG00000175318	GRAMD2A	GRAMD2	GRAM domain containing 2A	protein-coding
231670	chr9	131675951	131676830	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-24987	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
135053	chr2	156368671	156369030	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-26730	NR_147695	440918		NR_147695		FLJ46875	-	uncharacterized LOC440918	ncRNA
169736	chr3	172476171	172476330	+	0	NA	Intergenic	AluSq2|SINE|Alu	-27794	NM_198407	2693		NM_004122	ENSG00000121853	GHSR	GHDP|GHS-R1a|GHSR-1a	growth hormone secretagogue receptor	protein-coding
87411	chr16	70653551	70654680	+	0	NA	intron (NM_152456, intron 2 of 6)	intron (NM_152456, intron 2 of 6)	30123	NM_001172772	146433		NM_152456	ENSG00000157368	IL34	C16orf77|IL-34	interleukin 34	protein-coding
134455	chr2	143181401	143182130	+	0	NA	intron (NM_018460, intron 2 of 13)	Tigger1|DNA|TcMar-Tigger	52346	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
36460	chr11	5704871	5705030	+	0	NA	intron (NM_006074, intron 4 of 7)	intron (NM_006074, intron 4 of 7)	15160	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
131176	chr2	94266851	94267150	+	0	NA	Intergenic	Intergenic	-58581	NR_146107	728034		NR_146105		BMS1P23	-	BMS1 pseudogene 23	pseudo
129816	chr2	72137301	72138100	+	0	NA	intron (NM_001277742, intron 1 of 4)	intron (NM_001277742, intron 1 of 4)	10162	NM_001277742	56603		NM_019885	ENSG00000003137	CYP26B1	CYP26A2|P450RAI-2|P450RAI2|RHFCA	cytochrome P450 family 26 subfamily B member 1	protein-coding
57433	chr12	121890951	121891650	+	0	NA	intron (NM_001261400, intron 1 of 3)	AluJr4|SINE|Alu	2510	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
209350	chr7	76266901	76267530	+	0	NA	intron (NM_001291831, intron 10 of 15)	CpG	-35458	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
56236	chr12	111843851	111844230	+	0	NA	intron (NM_001371479, intron 1 of 15)	AluY|SINE|Alu	-1035	NR_015404	51275		NR_015404	ENSG00000234608	MAPKAPK5-AS1	C12orf47|MAAS	MAPKAPK5 antisense RNA 1	ncRNA
95498	chr17	36289901	36290300	+	0	NA	intron (NR_164156, intron 1 of 5)	MER21A|LTR|ERVL	15901	NR_164156	101929950		NR_164156		LOC101929950	-	puromycin-sensitive aminopeptidase-like protein	pseudo
36261	chr11	3784821	3785930	+	0	NA	intron (NR_157590, intron 1 of 31)	MER102b|DNA|hAT-Charlie	12171	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
87210	chr16	69451201	69452000	+	0	NA	intron (NM_030579, intron 3 of 4)	L1ME4b|LINE|L1	26981	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
177538	chr4	118837851	118838230	+	0	NA	Intergenic	AluY|SINE|Alu	-1914	NM_014822	9871		NM_014822	ENSG00000150961	SEC24D	CLCRP2	SEC24 homolog D, COPII coat complex component	protein-coding
129531	chr2	69699101	69699300	+	0	NA	intron (NM_001320698, intron 2 of 14)	MIR1_Amn|SINE|MIR	-42934	NM_001320702	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
198108	chr6	90296401	90297350	+	0	NA	promoter-TSS (NM_001170794)	promoter-TSS (NM_001170794)	-32	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
13288	chr1	113042421	113042830	+	0	NA	intron (NR_103777, intron 2 of 2)	intron (NR_103777, intron 2 of 2)	30477	NR_103777	100996251		NR_103777	ENSG00000238198	LRIG2-DT	-	LRIG2 divergent transcript	ncRNA
96362	chr17	40090821	40091330	+	0	NA	3' UTR (NM_199334, exon 9 of 9)	3' UTR (NM_199334, exon 9 of 9)	9514	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
234344	chrX	15202671	15203430	+	0	NA	Intergenic	Intergenic	67033	NM_024087	140462		NM_024087	ENSG00000102048	ASB9	-	ankyrin repeat and SOCS box containing 9	protein-coding
195183	chr6	36031051	36031150	+	0	NA	intron (NM_139014, intron 1 of 10)	AluSx1|SINE|Alu	3292	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
132988	chr2	111508951	111509450	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-14039	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
16622	chr1	155084171	155085800	+	0	NA	intron (NM_004952, intron 1 of 4)	CpG	6148	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
95105	chr17	34665251	34665750	+	0	NA	Intergenic	Intergenic	85918	NM_001304438	124842		NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding
82013	chr16	11922051	11922350	+	0	NA	Intergenic	MER21C|LTR|ERVL	-5546	NM_001130007	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
215253	chr7	156941621	156942130	+	0	NA	Intergenic	CpG	-7837	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
100844	chr17	64125221	64126100	+	0	NA	intron (NM_001433, intron 1 of 21)	AluSz6|SINE|Alu	4484	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
193823	chr6	31476421	31476930	+	0	NA	Intergenic	LTR33|LTR|ERVL	5446	NR_002812	352961		NR_002812		HCG26	3.8-1|NCRNA00191|bCX205D4.4|bPG181B23.4	HLA complex group 26	ncRNA
137776	chr2	199462521	199462880	+	0	NA	intron (NM_015265, intron 1 of 11)	CpG	2408	NM_001172517	23314		NM_015265	ENSG00000119042	SATB2	C2DELq32q33|DEL2Q32Q33|GLSS	SATB homeobox 2	protein-coding
176181	chr4	83350001	83350580	+	0	NA	Intergenic	L1MB2|LINE|L1	-15137	NM_001166498	10855		NM_006665	ENSG00000173083	HPSE	HPA|HPA1|HPR1|HPSE1|HSE1	heparanase	protein-coding
232524	chr9	136327151	136329100	+	0	NA	promoter-TSS (NR_026964)	promoter-TSS (NR_026964)	586	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
52540	chr12	56127751	56128900	+	0	NA	promoter-TSS (NM_015292)	promoter-TSS (NM_015292)	58	NM_015292	23344		NM_015292	ENSG00000139641	ESYT1	FAM62A|MBC2	extended synaptotagmin 1	protein-coding
13939	chr1	120257851	120257950	+	0	NA	Intergenic	Intergenic	-81380	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
123175	chr19	52269201	52270650	+	0	NA	intron (NM_001010851, intron 1 of 3)	CpG	338	NM_001010851	90321		NM_001010851	ENSG00000196214	ZNF766	-	zinc finger protein 766	protein-coding
194976	chr6	35344351	35344850	+	0	NA	intron (NM_006238, intron 1 of 7)	intron (NM_006238, intron 1 of 7)	2042	NM_006238	5467		NM_006238	ENSG00000112033	PPARD	FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB	peroxisome proliferator activated receptor delta	protein-coding
205728	chr7	23488171	23488500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2053	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
20548	chr1	198704521	198704980	+	0	NA	intron (NM_002838, intron 8 of 32)	L1PA16|LINE|L1	65710	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
29657	chr10	71909101	71909500	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-55095	NM_004273	9469		NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate sulfotransferase 3	protein-coding
187554	chr5	142780871	142781450	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	9933	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
144148	chr20	34042101	34042550	+	0	NA	intron (NM_016732, intron 2 of 9)	MIR3|SINE|MIR	-6794	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
72100	chr15	28924651	28924850	+	0	NA	intron (NM_001353790, intron 2 of 14)	L1MB5|LINE|L1	3113	NM_001130414	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
202825	chr6	159712251	159712950	+	0	NA	intron (NM_001322817, intron 3 of 7)	intron (NM_001322817, intron 3 of 7)	14350	NM_001322820	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
61384	chr13	51452401	51454600	+	0	NA	promoter-TSS (NM_001306091)	promoter-TSS (NM_001306091)	155	NR_103812	100507398		NR_103812	ENSG00000236778	INTS6-AS1	-	INTS6 antisense RNA 1	ncRNA
36592	chr11	6721351	6721730	+	0	NA	non-coding (NR_003945, exon 1 of 1)	non-coding (NR_003945, exon 1 of 1)	339	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
24489	chr1	244324951	244326250	+	0	NA	Intergenic	Intergenic	-27035	NM_001276348	200159		NM_001012970	ENSG00000173728	SPMIP3	C1orf100	sperm microtubule inner protein 3	protein-coding
72468	chr15	32453901	32454130	+	0	NA	intron (NM_001277308, intron 1 of 18)	intron (NM_001277308, intron 1 of 18)	1619	NM_001277308	728047		NM_001277308	ENSG00000206127	GOLGA8O	-	golgin A8 family member O	protein-coding
130545	chr2	85680451	85681130	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	-12049	NM_198843	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
127926	chr2	46431051	46431750	+	0	NA	intron (NR_103805, intron 1 of 3)	L2|LINE|L2	2210	NR_103805	101805491		NR_103805	ENSG00000187600	LINC02583	-	long intergenic non-protein coding RNA 2583	ncRNA
4749	chr1	23485871	23486600	+	0	NA	Intergenic	L2c|LINE|L2	-2056	NM_017707	55616		NM_017707	ENSG00000088280	ASAP3	ACAP4|CENTB6|DDEFL1|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding
26366	chr10	16434771	16435500	+	0	NA	Intergenic	Intergenic	-1808	NM_001261837	9317		NM_030664	ENSG00000165983	PTER	HPHRP|RPR-1	phosphotriesterase related	protein-coding
37989	chr11	35040051	35041230	+	0	NA	Intergenic	Intergenic	97392	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
47917	chr12	6771051	6771550	+	0	NA	TTS (NM_002824)	TTS (NM_002824)	-1220	NM_002286	3902		NM_002286	ENSG00000089692	LAG3	CD223	lymphocyte activating 3	protein-coding
91754	chr17	6829851	6830350	+	0	NA	intron (NM_053285, intron 2 of 7)	intron (NM_053285, intron 2 of 7)	1629	NM_053285	83659		NM_053285	ENSG00000167858	TEKT1	-	tektin 1	protein-coding
63129	chr13	113434821	113435080	+	0	NA	intron (NM_138430, intron 2 of 6)	intron (NM_138430, intron 2 of 6)	14208	NM_199162	113622		NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
134023	chr2	131044101	131044300	+	0	NA	intron (NM_001375902, intron 8 of 10)	intron (NM_001375902, intron 8 of 10)	48962	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
18649	chr1	166947521	166948000	+	0	NA	intron (NM_199351, intron 3 of 9)	CpG	27780	NM_199351	387597		NM_199351	ENSG00000143195	ILDR2	C1orf32|dJ782G3.1	immunoglobulin like domain containing receptor 2	protein-coding
149844	chr21	35042821	35043150	+	0	NA	intron (NM_001754, intron 2 of 8)	GA-rich|Low_complexity|Low_complexity	-3559	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
135425	chr2	161159021	161159280	+	0	NA	intron (NM_133484, intron 1 of 3)	L1MC|LINE|L1	-1278	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
116930	chr19	18837351	18837800	+	0	NA	intron (NM_001297549, intron 1 of 23)	intron (NM_001297549, intron 1 of 23)	5616	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
37238	chr11	14539951	14540450	+	0	NA	intron (NM_148976, intron 2 of 10)	intron (NM_148976, intron 2 of 10)	-19755	NM_001143937	5682		NM_002786	ENSG00000129084	PSMA1	HC2|HEL-S-275|NU|PROS30	proteasome 20S subunit alpha 1	protein-coding
67107	chr14	68368771	68369400	+	0	NA	intron (NM_133509, intron 8 of 10)	intron (NM_133509, intron 8 of 10)	259702	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
108558	chr18	74840671	74840830	+	0	NA	intron (NM_001384475, intron 4 of 8)	L2a|LINE|L2	209787	NM_001146190	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
12247	chr1	100437001	100437200	+	0	NA	intron (NM_001319210, intron 5 of 16)	AluJb|SINE|Alu	84594	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
204570	chr7	5229671	5229830	+	0	NA	intron (NM_015610, intron 12 of 12)	intron (NM_015610, intron 12 of 12)	15481	NM_001033520	26100		NM_015610	ENSG00000157954	WIPI2	ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2	WD repeat domain, phosphoinositide interacting 2	protein-coding
80328	chr16	2443551	2444050	+	0	NA	exon (NM_001761, exon 9 of 17)	exon (NM_001761, exon 9 of 17)	-1592	NR_106825	102465459		NR_106825	ENSG00000283180	MIR6767	hsa-mir-6767	microRNA 6767	ncRNA
114071	chr19	11094771	11095510	+	0	NA	intron (NM_001195800, intron 1 of 15)	intron (NM_001195800, intron 1 of 15)	-5481	NR_163945	115271120		NR_163945		LDLR-AS1	-	LDLR antisense RNA 1	ncRNA
25533	chr10	7383521	7383980	+	0	NA	intron (NM_001029880, intron 1 of 20)	intron (NM_001029880, intron 1 of 20)	25591	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
222268	chr8	133289421	133289980	+	0	NA	intron (NM_001374844, intron 1 of 15)	intron (NM_001374844, intron 1 of 15)	6990	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
130827	chr2	87069451	87070200	+	0	NA	intron (NR_026846, intron 1 of 10)	MLT1K|LTR|ERVL-MaLR	6588	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
166006	chr3	108153351	108153700	+	0	NA	Intergenic	Intergenic	27704	NR_110028	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
200829	chr6	137982401	137983080	+	0	NA	Intergenic	Intergenic	-36940	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
14656	chr1	145714601	145715000	+	0	NA	Intergenic	Intergenic	-4699	NR_103845	11126		NM_007053	ENSG00000117281	CD160	BY55|NK1|NK28	CD160 molecule	protein-coding
132549	chr2	106191501	106191830	+	0	NA	intron (NR_165308, intron 1 of 14)	L2c|LINE|L2	2636	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
202547	chr6	158643951	158645250	+	0	NA	intron (NM_006519, intron 1 of 4)	CpG	143	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
213272	chr7	134654221	134654480	+	0	NA	intron (NM_001293085, intron 2 of 3)	intron (NM_001293085, intron 2 of 3)	7497	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
157653	chr22	46141301	46141700	+	0	NA	Intergenic	Intergenic	-9026	NM_005036	5465		NM_005036	ENSG00000186951	PPARA	NR1C1|PPAR|PPAR-alpha|PPARalpha|hPPAR	peroxisome proliferator activated receptor alpha	protein-coding
124638	chr2	1781151	1782000	+	0	NA	Intergenic	Intergenic	-37060	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
68195	chr14	76784601	76785090	+	0	NA	intron (NR_104183, intron 1 of 2)	intron (NR_104183, intron 1 of 2)	1879	NR_104183	100506603		NR_104183	ENSG00000258301	VASH1-AS1	-	VASH1 antisense RNA 1	ncRNA
226611	chr9	73167571	73168030	+	0	NA	intron (NM_000700, intron 11 of 12)	intron (NM_000700, intron 11 of 12)	15935	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
84064	chr16	29589601	29590300	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSq|SINE|Alu	5142	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
47725	chr12	6464501	6464900	+	0	NA	3' UTR (NM_199245, exon 4 of 4)	3' UTR (NM_199245, exon 4 of 4)	5977	NR_123717	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
54424	chr12	91361801	91362030	+	0	NA	Intergenic	Intergenic	-179098	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
93340	chr17	18214271	18214430	+	0	NA	Intergenic	AluY|SINE|Alu	-11285	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
97666	chr17	44213151	44214000	+	0	NA	intron (NM_001076683, intron 5 of 19)	MIR3|SINE|MIR	-5736	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
172390	chr4	1768671	1768830	+	0	NA	Intergenic	Intergenic	-24543	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
165861	chr3	105902321	105902400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-32959	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
89001	chr16	87959521	87960000	+	0	NA	promoter-TSS (NM_001173542)	promoter-TSS (NM_001173542)	-111	NM_001173542	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
3287	chr1	15296851	15297350	+	0	NA	intron (NM_052929, intron 5 of 30)	MIRb|SINE|MIR	46783	NR_148918	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
68408	chr14	80988571	80989150	+	0	NA	intron (NM_001142626, intron 1 of 8)	L2c|LINE|L2	33239	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
190941	chr6	2892921	2893180	+	0	NA	intron (NM_004155, intron 5 of 6)	intron (NM_004155, intron 5 of 6)	9062	NR_110841	101927730		NR_110841		SERPINB9-AS1	-	SERPINB9 antisense RNA 1	ncRNA
204243	chr7	2553521	2553780	+	0	NA	intron (NM_001350627, intron 2 of 12)	AluJo|SINE|Alu	1874	NR_146879	221927		NM_152743	ENSG00000106009	BRAT1	BAAT1|C7orf27|NEDCAS|RMFSL	BRCA1 associated ATM activator 1	protein-coding
157903	chr22	49762501	49762900	+	0	NA	Intergenic	L1ME3G|LINE|L1	61631	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
68160	chr14	75657151	75657650	+	0	NA	exon (NM_007176, exon 2 of 5)	exon (NM_007176, exon 2 of 5)	3476	NM_007176	11161		NM_007176	ENSG00000133935	ERG28	C14orf1|NET51	ergosterol biosynthesis 28 homolog	protein-coding
17326	chr1	156471421	156471980	+	0	NA	intron (NM_001271629, intron 8 of 10)	intron (NM_001271629, intron 8 of 10)	18987	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
216914	chr8	22703271	22703880	+	0	NA	Intergenic	CpG	-10095	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
179880	chr5	631301	631600	+	0	NA	intron (NR_164122, intron 4 of 15)	intron (NR_164122, intron 4 of 15)	19110	NM_018140	55722		NM_018140	ENSG00000112877	CEP72	-	centrosomal protein 72	protein-coding
222296	chr8	133472551	133472850	+	0	NA	intron (NM_173344, intron 5 of 9)	intron (NM_173344, intron 5 of 9)	99187	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
40781	chr11	64881801	64882000	+	0	NA	Intergenic	Intergenic	-2187	NM_001282445	10938		NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH domain containing 1	protein-coding
59820	chr13	30411771	30411930	+	0	NA	Intergenic	Intergenic	10394	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
192697	chr6	26299651	26299750	+	0	NA	Intergenic	tRNA-Arg-CGA|tRNA|tRNA	-14166	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
88947	chr16	87841171	87841750	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-6800	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
62072	chr13	94327121	94327900	+	0	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	-139519	NR_046535	100873972		NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA
44092	chr11	95715901	95716300	+	0	NA	Intergenic	Intergenic	73682	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
134329	chr2	136107351	136107980	+	0	NA	Intergenic	Intergenic	8570	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
204327	chr7	2718201	2718400	+	0	NA	3' UTR (NM_133463, exon 7 of 7)	3' UTR (NM_133463, exon 7 of 7)	30098	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
16275	chr1	154002451	154002750	+	0	NA	intron (NM_207308, intron 35 of 39)	AluSg|SINE|Alu	11838	NM_001030	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
156144	chr22	40172001	40172400	+	0	NA	intron (NM_001024843, intron 4 of 23)	L2a|LINE|L2	-5725	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
165955	chr3	107690521	107690980	+	0	NA	intron (NM_020235, intron 3 of 16)	intron (NM_020235, intron 3 of 16)	167788	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
168413	chr3	142276021	142276280	+	0	NA	Intergenic	Intergenic	-50565	NM_001039547	256356		NM_152776	ENSG00000175066	GK5	-	glycerol kinase 5	protein-coding
77758	chr15	85759871	85760480	+	0	NA	3' UTR (NM_022480, exon 3 of 3)	3' UTR (NM_022480, exon 3 of 3)	-1450	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
197642	chr6	83874001	83874200	+	0	NA	intron (NM_016230, intron 2 of 15)	intron (NM_016230, intron 2 of 15)	14411	NM_016230	51167		NM_016230	ENSG00000065615	CYB5R4	NCB5OR|cb5/cb5R|dJ676J13.1	cytochrome b5 reductase 4	protein-coding
80964	chr16	3876751	3877280	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	3105	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
157754	chr22	46675821	46676080	+	0	NA	intron (NM_001366660, intron 17 of 17)	intron (NM_001366660, intron 17 of 17)	55564	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
147012	chr20	53581771	53582540	+	0	NA	exon (NM_001385034, exon 2 of 5)	exon (NM_001385034, exon 2 of 5)	11684	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
63097	chr13	113262951	113263050	+	0	NA	promoter-TSS (NR_107042)	promoter-TSS (NR_107042)	80	NR_107042	102465874		NR_107042	ENSG00000277942	MIR8075	hsa-mir-8075	microRNA 8075	ncRNA
27662	chr10	33032571	33032730	+	0	NA	Intergenic	Intergenic	-74420	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
73293	chr15	41872321	41872650	+	0	NA	intron (NM_016642, intron 26 of 67)	intron (NM_016642, intron 26 of 67)	-5934	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
161483	chr3	42501671	42503880	+	0	NA	exon (NM_001251885, exon 1 of 13)	exon (NM_001251885, exon 1 of 13)	132	NM_004624	7433		NM_004624	ENSG00000114812	VIPR1	HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R	vasoactive intestinal peptide receptor 1	protein-coding
207592	chr7	44964521	44965300	+	0	NA	intron (NM_033054, intron 18 of 21)	intron (NM_033054, intron 18 of 21)	14105	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
225239	chr9	34219071	34219230	+	0	NA	intron (NR_033243, intron 2 of 7)	AluJb|SINE|Alu	40107	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
165605	chr3	101675621	101676700	+	0	NA	promoter-TSS (NR_024407)	promoter-TSS (NR_024407)	-270	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
33545	chr10	119289121	119289980	+	0	NA	intron (NM_005308, intron 1 of 15)	MIRc|SINE|MIR	81979	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
83637	chr16	28294821	28296330	+	0	NA	intron (NM_001024401, intron 1 of 3)	L2b|LINE|L2	3050	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
110046	chr19	1472621	1472950	+	0	NA	TTS (NM_152482)	TTS (NM_152482)	6430	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
40823	chr11	64935471	64935630	+	0	NA	intron (NM_130769, intron 1 of 3)	intron (NM_130769, intron 1 of 3)	343	NM_130769	170589		NM_130769	ENSG00000149735	GPHA2	A2|GPA2|ZSIG51	glycoprotein hormone subunit alpha 2	protein-coding
48240	chr12	8245701	8245900	+	0	NA	Intergenic	AluSc|SINE|Alu	-2854	NR_024254	653113		NR_024254		FAM86FP	-	family with sequence similarity 86, member A pseudogene	pseudo
40992	chr11	65397621	65397880	+	0	NA	intron (NM_001300832, intron 6 of 9)	AluJb|SINE|Alu	11113	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
55164	chr12	100154821	100155630	+	0	NA	Intergenic	Intergenic	-12351	NM_001006947	23074		NM_015054	ENSG00000111647	BLTP3B	SHIP164|SHIP164A|UHRF1BP1L	bridge-like lipid transfer protein family member 3B	protein-coding
60638	chr13	42387651	42387950	+	0	NA	Intergenic	Intergenic	-37092	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
228460	chr9	99846621	99846880	+	0	NA	intron (NM_173200, intron 7 of 8)	AluSx|SINE|Alu	24865	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
22425	chr1	220123951	220124130	+	0	NA	intron (NM_018060, intron 12 of 22)	MIR|SINE|MIR	-5799	NR_029711	406969		NR_029711	ENSG00000207624	MIR194-1	MIRN194-1|mir-194-1	microRNA 194-1	ncRNA
77278	chr15	82045051	82045400	+	0	NA	intron (NM_032246, intron 1 of 1)	CpG	793	NM_032246	84206		NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
164796	chr3	69368301	69368850	+	0	NA	intron (NM_015123, intron 1 of 22)	intron (NM_015123, intron 1 of 22)	17513	NM_015123	23150		NM_015123	ENSG00000114541	FRMD4B	6030440G05Rik|GRSP1	FERM domain containing 4B	protein-coding
152554	chr22	21009501	21010100	+	0	NA	non-coding (NR_027051, exon 2 of 2)	non-coding (NR_027051, exon 2 of 2)	4487	NR_003608	113691		NR_003608	ENSG00000284130	TUBA3FP	-	tubulin alpha 3f pseudogene	pseudo
141757	chr2	241941801	241942000	+	0	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	-28783	NR_110592	102723927		NR_110592	ENSG00000237940	LINC01238	-	long intergenic non-protein coding RNA 1238	ncRNA
6426	chr1	28168971	28170200	+	0	NA	intron (NM_001164722, intron 1 of 1)	MIR|SINE|MIR	7105	NM_000952	5724		NM_000952	ENSG00000169403	PTAFR	PAFR	platelet activating factor receptor	protein-coding
79453	chr16	719421	720800	+	0	NA	TTS (NM_024042)	TTS (NM_024042)	-1036	NM_001271285	65990		NM_023933	ENSG00000103254	ANTKMT	ANT-KMT|C16orf24|FAM173A	adenine nucleotide translocase lysine methyltransferase	protein-coding
22373	chr1	218165201	218165600	+	0	NA	Intergenic	CpG	-119893	NM_016052	51018		NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
155271	chr22	38056521	38057850	+	0	NA	promoter-TSS (NM_001039584)	promoter-TSS (NM_001039584)	-70	NM_001039584	9463		NM_012407	ENSG00000100151	PICK1	PICK|PRKCABP	protein interacting with PRKCA 1	protein-coding
145270	chr20	40962721	40963280	+	0	NA	Intergenic	Intergenic	-17713	NR_145524	100128988		NR_145524		LOC100128988	-	uncharacterized LOC100128988	ncRNA
170896	chr3	193776701	193776900	+	0	NA	Intergenic	Intergenic	67209	NR_146718	105374285		NR_146718		LINC02038	-	long intergenic non-protein coding RNA 2038	ncRNA
49667	chr12	29379251	29379550	+	0	NA	intron (NM_016570, intron 1 of 13)	intron (NM_016570, intron 1 of 13)	1772	NM_016570	51290		NM_016570	ENSG00000087502	ERGIC2	CDA14|Erv41|PTX1|cd002	ERGIC and golgi 2	protein-coding
81796	chr16	11538421	11538880	+	0	NA	Intergenic	Intergenic	-11403	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
80098	chr16	2011951	2012250	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2279	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
118143	chr19	34998801	34999100	+	0	NA	intron (NM_001320036, intron 2 of 19)	L2b|LINE|L2	-1373	NM_001320035	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
166494	chr3	114306971	114308300	+	0	NA	intron (NM_173799, intron 3 of 3)	L2|LINE|L2	8934	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
202792	chr6	159106221	159107200	+	0	NA	Intergenic	Intergenic	-61558	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
228791	chr9	111664371	111664530	+	0	NA	intron (NM_001198664, intron 1 of 2)	intron (NM_001198664, intron 1 of 2)	2845	NM_001017998	2790		NM_001017998	ENSG00000242616	GNG10	-	G protein subunit gamma 10	protein-coding
206157	chr7	27953701	27953900	+	0	NA	intron (NM_175061, intron 2 of 4)	intron (NM_175061, intron 2 of 4)	213705	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
148659	chr21	6116521	6116850	+	0	NA	intron (NM_173354, intron 5 of 13).2	intron (NM_173354, intron 5 of 13).2	5554	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
199681	chr6	122494901	122495100	+	0	NA	intron (NM_001270393, intron 3 of 7)	L1PA15-16|LINE|L1	23083	NM_181794	5570		NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding
71885	chr15	22471701	22472400	+	0	NA	Intergenic	Intergenic	10324	NR_036470	100132101		NR_036470		HERC2P7	-	HERC2 pseudogene 7	pseudo
218993	chr8	63146971	63147130	+	0	NA	Intergenic	MER48|LTR|ERV1	21392	NR_102684	101410533		NR_102684	ENSG00000270673	YTHDF3-DT	YTHDF3-AS1	YTHDF3 divergent transcript	ncRNA
136159	chr2	174341521	174342000	+	0	NA	Intergenic	CpG	6806	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
65643	chr14	52318801	52319750	+	0	NA	intron (NM_000956, intron 1 of 1)	intron (NM_000956, intron 1 of 1)	4963	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
49378	chr12	22413121	22413380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-78536	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
227038	chr9	83963801	83965050	+	0	NA	Intergenic	AluY|SINE|Alu	5432	NR_029605	407043		NR_029605	ENSG00000284179	MIR7-1	MIRN7-1|hsa-mir-7-1|mir-7-1	microRNA 7-1	ncRNA
815	chr1	1561271	1561430	+	0	NA	intron (NM_014188, intron 2 of 4)	AluSg|SINE|Alu	13513	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
3901	chr1	17128551	17128650	+	0	NA	Intergenic	LTR24B|LTR|ERV1	-9149	NM_007365	11240		NM_007365	ENSG00000117115	PADI2	PAD-H19|PAD2|PDI2	peptidyl arginine deiminase 2	protein-coding
110373	chr19	1912951	1913830	+	0	NA	TTS (NM_001329533)	TTS (NM_001329533)	7991	NM_001329533	113179		NM_138422	ENSG00000213638	ADAT3	FWP005|MRT36|MST121|MSTP121|NEDBGF|S863-5|TAD3	adenosine deaminase tRNA specific 3	protein-coding
13106	chr1	111624371	111624810	+	0	NA	intron (NM_001291896, intron 1 of 7)	MamSINE1|SINE|tRNA-RTE	-4192	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
125809	chr2	24060851	24061200	+	0	NA	intron (NM_001322964, intron 3 of 3)	intron (NM_001322964, intron 3 of 3)	11284	NR_136536	2281		NM_004116	ENSG00000119782	FKBP1B	FKBP12.6|FKBP1L|OTK4|PKBP1L|PPIase	FKBP prolyl isomerase 1B	protein-coding
4414	chr1	21219371	21219730	+	0	NA	3' UTR (NM_001113349, exon 18 of 18)	3' UTR (NM_001113349, exon 18 of 18)	-42653	NM_001198802	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
165367	chr3	93141401	93141600	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	832396	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
194949	chr6	35265671	35266030	+	0	NA	intron (NM_003427, intron 1 of 13)	L2a|LINE|L2	6115	NM_001292032	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
137749	chr2	197891721	197892200	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	87367	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
130321	chr2	84974121	84974950	+	0	NA	intron (NM_020122, intron 1 of 6)	MER58B|DNA|hAT-Charlie	3374	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
112075	chr19	5313321	5313580	+	0	NA	intron (NM_130853, intron 1 of 28)	intron (NM_130853, intron 1 of 28)	27362	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
175769	chr4	77781951	77783080	+	0	NA	intron (NM_001365006, intron 1 of 11)	AluJr|SINE|Alu	36549	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
207747	chr7	48099471	48099850	+	0	NA	intron (NM_001287429, intron 3 of 5)	intron (NM_001287429, intron 3 of 5)	10395	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
69812	chr14	99210651	99210750	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	61497	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
217358	chr8	27837321	27838600	+	0	NA	promoter-TSS (NM_001363040)	promoter-TSS (NM_001363040)	-143	NM_001363040	55872		NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
233842	chrX	1504301	1504780	+	0	NA	intron (NM_178129, intron 1 of 1)	Charlie2b|DNA|hAT-Charlie	32645	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
46356	chr11	125923071	125923300	+	0	NA	3' UTR (NM_001330438, exon 12 of 12)	3' UTR (NM_001330438, exon 12 of 12)	18677	NM_013264	29118		NM_013264	ENSG00000109832	DDX25	GRTH	DEAD-box helicase 25	protein-coding
170437	chr3	185902021	185902280	+	0	NA	Intergenic	Intergenic	35864	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
153637	chr22	28772471	28774480	+	0	NA	intron (NM_001284265, intron 1 of 4)	intron (NM_001284265, intron 1 of 4)	338	NM_001284265	150275		NM_173510	ENSG00000159873	CCDC117	dJ366L4.1	coiled-coil domain containing 117	protein-coding
38845	chr11	47325501	47325900	+	0	NA	intron (NR_164840, intron 33 of 35)	intron (NR_164840, intron 33 of 35)	27002	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
148909	chr21	8986631	8987700	+	0	NA	promoter-TSS (NR_162111).2	promoter-TSS (NR_162111).2	166	NR_128711	103504731		NR_128711	ENSG00000264462	MIR3648-2	hsa-mir-3648-2	microRNA 3648-2	ncRNA
16755	chr1	155324101	155325750	+	0	NA	promoter-TSS (NR_145424)	promoter-TSS (NR_145424)	418	NM_001278230	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
122407	chr19	49440701	49440900	+	0	NA	intron (NM_020309, intron 1 of 11)	intron (NM_020309, intron 1 of 11)	727	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
204821	chr7	5689131	5689800	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	-9004	NR_046834	100874342		NR_046834	ENSG00000237738	RNF216-IT1	-	RNF216 intronic transcript 1	ncRNA
84998	chr16	31475921	31478100	+	0	NA	exon (NM_001164719, exon 10 of 11)	exon (NM_001164719, exon 10 of 11)	3805	NM_015927	7041		NM_015927	ENSG00000140682	TGFB1I1	ARA55|HIC-5|HIC5|TSC-5	transforming growth factor beta 1 induced transcript 1	protein-coding
32081	chr10	101125751	101125850	+	0	NA	intron (NR_130724, intron 2 of 2)	intron (NR_130724, intron 2 of 2)	5346	NR_130723	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
186224	chr5	134388751	134389050	+	0	NA	intron (NM_003337, intron 5 of 5)	intron (NM_003337, intron 5 of 5)	17331	NM_003337	7320		NM_003337	ENSG00000119048	UBE2B	E2-17kDa|HHR6B|HR6B|RAD6B|UBC2	ubiquitin conjugating enzyme E2 B	protein-coding
211292	chr7	103160301	103160500	+	0	NA	Intergenic	Intergenic	-11301	NM_198990	222236		NM_198990	ENSG00000161048	NAPEPLD	C7orf18|FMP30|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding
67309	chr14	69609821	69610080	+	0	NA	Intergenic	Intergenic	-1646	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
91274	chr17	4086221	4086480	+	0	NA	intron (NM_015113, intron 15 of 54)	intron (NM_015113, intron 15 of 54)	56680	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
46198	chr11	123477221	123477480	+	0	NA	intron (NM_001367421, intron 2 of 20)	intron (NM_001367421, intron 2 of 20)	-32566	NM_001330396	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
227974	chr9	95181301	95181500	+	0	NA	intron (NM_001243743, intron 4 of 14)	intron (NM_001243743, intron 4 of 14)	-95306	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA
109423	chr19	701621	701900	+	0	NA	Intergenic	AluSx|SINE|Alu	-6308	NM_214710	400668		NM_214710	ENSG00000185198	PRSS57	NSP4|PRSSL1|UNQ782	serine protease 57	protein-coding
63327	chr13	114011871	114012050	+	0	NA	intron (NM_001320822, intron 15 of 23).2	intron (NM_001320822, intron 15 of 23).2	-37884	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
110079	chr19	1509251	1510250	+	0	NA	intron (NM_001367197, intron 6 of 12)	intron (NM_001367197, intron 6 of 12)	3269	NM_001367197	339366		NM_213604	ENSG00000185761	ADAMTSL5	THSD6	ADAMTS like 5	protein-coding
225167	chr9	33837271	33837500	+	0	NA	intron (NM_017811, intron 1 of 4)	AluJo|SINE|Alu	20225	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
31904	chr10	100370471	100371680	+	0	NA	Intergenic	Intergenic	-2501	NR_026762	90271		NR_026762	ENSG00000235823	OLMALINC	C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS	oligodendrocyte maturation-associated long intergenic non-coding RNA	ncRNA
211127	chr7	102531821	102532350	+	0	NA	Intergenic	Intergenic	12703	NM_001363506	107983993		NM_001363506	ENSG00000284981	UPK3BL2	-	uroplakin 3B like 2	protein-coding
182903	chr5	70302321	70302580	+	0	NA	intron (NR_027386, intron 3 of 5).2	MLT1C|LTR|ERVL-MaLR	-12273	NR_029426	11039		NM_006780		GUSBP14	SMA3|SMA4|b55C20.2	GUSB pseudogene 14	pseudo
46891	chr11	134049321	134049730	+	0	NA	Intergenic	Intergenic	17253	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
101432	chr17	67421601	67422730	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	44884	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
46405	chr11	126330671	126330830	+	0	NA	intron (NM_014026, intron 2 of 5)	AluSp|SINE|Alu	24837	NR_033839	399972		NR_033839		GSEC	DCPS-AS1|ST3GAL4-AS1	G-quadruplex forming sequence containing lncRNA	ncRNA
237623	chrX	124013151	124013330	+	0	NA	intron (NM_001282418, intron 2 of 33)	intron (NM_001282418, intron 2 of 33)	51534	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
179752	chr5	251451	253250	+	0	NA	intron (NM_004168, intron 13 of 14)	intron (NM_004168, intron 13 of 14)	19174	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
168295	chr3	141519601	141519800	+	0	NA	intron (NM_006506, intron 3 of 23)	intron (NM_006506, intron 3 of 23)	32673	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
221945	chr8	129921371	129921930	+	0	NA	intron (NM_001353279, intron 2 of 13)	L1MC4|LINE|L1	18161	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
217671	chr8	30102471	30103080	+	0	NA	intron (NM_015344, intron 2 of 3)	L1M|LINE|L1	7367	NM_015344	23484		NM_015344	ENSG00000104660	LEPROTL1	HSPC112|Vps55|my047	leptin receptor overlapping transcript like 1	protein-coding
8694	chr1	42143301	42143500	+	0	NA	Intergenic	Intergenic	-10010	NM_007102	2981		NM_007102	ENSG00000044012	GUCA2B	GCAP-II|UGN	guanylate cyclase activator 2B	protein-coding
29912	chr10	73167601	73168630	+	0	NA	promoter-TSS (NM_001135752)	promoter-TSS (NM_001135752)	-4	NM_173348	317662		NM_173348	ENSG00000138286	FAM149B1	JBTS36|KIAA0974	family with sequence similarity 149 member B1	protein-coding
175835	chr4	78551751	78552050	+	0	NA	intron (NM_005139, intron 1 of 12)	CpG	130	NM_005139	306		NM_005139	ENSG00000138772	ANXA3	ANX3	annexin A3	protein-coding
182653	chr5	67200871	67201230	+	0	NA	Intergenic	Intergenic	-4251	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
45740	chr11	119123851	119124100	+	0	NA	intron (NM_015517, intron 2 of 10)	AluSc8|SINE|Alu	2395	NM_001351965	25988		NM_015517	ENSG00000172273	HINFP	HiNF-P|MIZF|ZNF743	histone H4 transcription factor	protein-coding
210972	chr7	101744571	101744930	+	0	NA	Intergenic	Intergenic	-71257	NM_181500	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
2279	chr1	8944521	8944780	+	0	NA	Intergenic	MIR|SINE|MIR	-1218	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
90124	chr16	90119551	90119930	+	0	NA	intron (NR_126161, intron 3 of 3)	MER21C|LTR|ERVL	17476	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
121195	chr19	46537271	46537830	+	0	NA	intron (NM_001370550, intron 1 of 2)	MIRb|SINE|MIR	-41683	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
164768	chr3	69099051	69099350	+	0	NA	intron (NM_006407, intron 1 of 2)	AluSq2|SINE|Alu	14263	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
172738	chr4	2831471	2832180	+	0	NA	intron (NM_001145856, intron 9 of 12)	intron (NM_001145856, intron 9 of 12)	-12019	NM_001354759	118		NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding
59738	chr13	29903871	29904030	+	0	NA	Intergenic	HERVL66-int|LTR|ERVL	-15545	NR_046510	100874059		NR_046510	ENSG00000224329	LINC00297	NCRNA00297	long intergenic non-protein coding RNA 297	ncRNA
158312	chr22	50422801	50424030	+	0	NA	intron (NM_001351646, intron 9 of 22)	intron (NM_001351646, intron 9 of 22)	15973	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
89873	chr16	89643271	89643430	+	0	NA	Intergenic	Intergenic	14358	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
118392	chr19	35733801	35734000	+	0	NA	intron (NM_014727, intron 30 of 36)	intron (NM_014727, intron 30 of 36)	8552	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
47652	chr12	6308421	6308880	+	0	NA	Intergenic	Intergenic	-1682	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
140423	chr2	233111451	233111950	+	0	NA	intron (NM_001017915, intron 2 of 26).2	L1MC4|LINE|L1	51358	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
7283	chr1	32385621	32386380	+	0	NA	intron (NM_001300958, intron 3 of 9)	intron (NM_001300958, intron 3 of 9)	8441	NM_018045	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
7335	chr1	32716551	32716980	+	0	NA	Intergenic	Intergenic	-13995	NM_001161708	81493		NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
194588	chr6	33440701	33440900	+	0	NA	exon (NM_001130066, exon 11 of 18)	exon (NM_001130066, exon 11 of 18)	2469	NR_049800	100847012		NR_049800	ENSG00000284256	MIR5004	mir-5004	microRNA 5004	ncRNA
182754	chr5	68285301	68285750	+	0	NA	intron (NM_181523, intron 7 of 15)	intron (NM_181523, intron 7 of 15)	-2994	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
17096	chr1	156144551	156145200	+	0	NA	Intergenic	L2a|LINE|L2	-5069	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
151382	chr21	45923051	45923500	+	0	NA	intron (NR_145493, intron 10 of 12)	intron (NR_145493, intron 10 of 12)	-49695	NR_109931	101928796		NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
170868	chr3	192850701	192850900	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	67056	NM_178496	151963		NM_178496	ENSG00000180611	MB21D2	C3orf59|D2A|hMB21D2	Mab-21 domain containing 2	protein-coding
193241	chr6	29929901	29930100	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-2785	NR_001317	80868		NR_001317		HCG4B	HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3	HLA complex group 4B	ncRNA
188425	chr5	154221451	154222280	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	31132	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
181628	chr5	48908071	48908230	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1533138	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
132576	chr2	106503971	106504330	+	0	NA	intron (NM_001349727, intron 4 of 5)	MIR|SINE|MIR	16786	NM_001349727	927		NM_001349727	ENSG00000254126	CD8B2	CD8BP	CD8B family member 2	protein-coding
44322	chr11	102395951	102396250	+	0	NA	TTS (NM_052932)	TTS (NM_052932)	48726	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
237724	chrX	125577621	125577700	+	0	NA	Intergenic	L1MA3|LINE|L1	257789	NM_001195272	100129520		NM_001195272	ENSG00000282815	TEX13C	-	TEX13 family member C	protein-coding
99916	chr17	56940901	56941380	+	0	NA	intron (NM_004645, intron 6 of 6)	AluY|SINE|Alu	19910	NM_004645	8161		NM_004645	ENSG00000121058	COIL	CLN80|p80-coilin	coilin	protein-coding
59569	chr13	27425611	27426730	+	0	NA	intron (NM_002097, intron 1 of 8)	intron (NM_002097, intron 1 of 8)	1551	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
145543	chr20	44195901	44196680	+	0	NA	3' UTR (NM_016470, exon 4 of 4)	3' UTR (NM_016470, exon 4 of 4)	-9102	NM_175913	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
120708	chr19	45181201	45181600	+	0	NA	3' UTR (NM_212550, exon 2 of 2)	3' UTR (NM_212550, exon 2 of 2)	2616	NM_212550	388552		NM_212550	ENSG00000189114	BLOC1S3	BLOS3|HPS8|RP	biogenesis of lysosomal organelles complex 1 subunit 3	protein-coding
61343	chr13	50891901	50892730	+	0	NA	intron (NR_046552, intron 1 of 2)	intron (NR_046552, intron 1 of 2)	-17363	NM_001142279	79621		NM_024570	ENSG00000136104	RNASEH2B	AGS2|DLEU8	ribonuclease H2 subunit B	protein-coding
211974	chr7	112866401	112866650	+	0	NA	intron (NM_152556, intron 3 of 4)	intron (NM_152556, intron 3 of 4)	73350	NM_152556	154743		NM_152556	ENSG00000164603	BMT2	C7orf60|SAMTOR	base methyltransferase of 25S rRNA 2 homolog	protein-coding
40465	chr11	64225001	64227950	+	0	NA	promoter-TSS (NM_031472)	promoter-TSS (NM_031472)	201	NM_001128613	84304		NM_032344	ENSG00000149761	NUDT22	-	nudix hydrolase 22	protein-coding
227127	chr9	86200701	86201250	+	0	NA	Intergenic	MIR3|SINE|MIR	55058	NM_001276368	389766		NM_001010907	ENSG00000187753	C9orf153	bA507D14.1	chromosome 9 open reading frame 153	protein-coding
34660	chr10	133339571	133339730	+	0	NA	Intergenic	Intergenic	-2754	NM_001321617	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
161158	chr3	39094421	39094880	+	0	NA	exon (NM_001346225, exon 20 of 20)	exon (NM_001346225, exon 20 of 20)	12977	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
167570	chr3	129427751	129429050	+	0	NA	intron (NM_207307, intron 1 of 8)	CpG	236	NM_207307	90288		NM_207307	ENSG00000172771	EFCAB12	C3orf25	EF-hand calcium binding domain 12	protein-coding
33810	chr10	123160371	123160970	+	0	NA	intron (NM_004725, intron 5 of 7)	intron (NM_004725, intron 5 of 7)	6268	NM_004725	9184		NM_004725	ENSG00000154473	BUB3	BUB3L|hBUB3	BUB3 mitotic checkpoint protein	protein-coding
122922	chr19	50661221	50661680	+	0	NA	3' UTR (NM_016148, exon 24 of 24)	3' UTR (NM_016148, exon 24 of 24)	12005	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
9259	chr1	46244821	46245480	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2538	NM_001370766	8438		NM_003579	ENSG00000085999	RAD54L	HR54|RAD54A|hHR54|hRAD54	RAD54 like	protein-coding
108921	chr18	79445851	79446150	+	0	NA	intron (NM_172389, intron 3 of 9)	intron (NM_172389, intron 3 of 9)	45701	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
39298	chr11	58592801	58593000	+	0	NA	intron (NM_053023, intron 2 of 10)	MSTB|LTR|ERVL-MaLR	13786	NR_024091	386607		NM_170768		ZFP91-CNTF	ZFP91|ZNF757|Zfp-91	ZFP91-CNTF readthrough (NMD candidate)	ncRNA
109231	chr19	497271	499230	+	0	NA	intron (NM_130760, intron 2 of 4)	intron (NM_130760, intron 2 of 4)	1764	NM_130760	8174		NM_130760	ENSG00000099866	MADCAM1	MACAM1	mucosal vascular addressin cell adhesion molecule 1	protein-coding
217945	chr8	38165821	38166080	+	0	NA	intron (NR_045492, intron 2 of 2)	intron (NR_045492, intron 2 of 2)	10543	NM_014462	27257		NM_014462	ENSG00000175324	LSM1	CASM|YJL124C	LSM1 homolog, mRNA degradation associated	protein-coding
221671	chr8	126131471	126131830	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-180453	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
150384	chr21	42289721	42290180	+	0	NA	intron (NM_207628, intron 12 of 16)	intron (NM_207628, intron 12 of 16)	25459	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
149434	chr21	31396901	31397100	+	0	NA	intron (NM_001353690, intron 1 of 27)	intron (NM_001353690, intron 1 of 27)	-52646	NM_001353687	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
116637	chr19	18308651	18309380	+	0	NA	intron (NM_001252129, intron 3 of 3)	intron (NM_001252129, intron 3 of 3)	14061	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
40490	chr11	64256001	64256230	+	0	NA	intron (NM_001316314, intron 8 of 31)	intron (NM_001316314, intron 8 of 31)	4585	NM_001184883	5331		NM_000932	ENSG00000149782	PLCB3	SMDCD	phospholipase C beta 3	protein-coding
179556	chr4	185150551	185150650	+	0	NA	TTS (NM_001151)	TTS (NM_001151)	7334	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
186409	chr5	135462221	135462550	+	0	NA	Intergenic	Intergenic	-10034	NM_001099221	497189		NM_001099221	ENSG00000255833	TIFAB	-	TIFA inhibitor	protein-coding
235663	chrX	48541351	48542100	+	0	NA	intron (NM_001348264, intron 2 of 5)	MER44A|DNA|TcMar-Tigger	2011	NM_002536	4943		NM_002536	ENSG00000068354	TBC1D25	MG81|OATL1	TBC1 domain family member 25	protein-coding
34695	chr10	133396921	133397180	+	0	NA	intron (NM_138384, intron 3 of 10)	LTR13|LTR|ERVK	2893	NM_138384	92170		NM_138384	ENSG00000148824	MTG1	GTP|GTPBP7	mitochondrial ribosome associated GTPase 1	protein-coding
4943	chr1	23964471	23964630	+	0	NA	non-coding (NR_034035, exon 7 of 7)	non-coding (NR_034035, exon 7 of 7)	4722	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
114893	chr19	13910301	13910500	+	0	NA	intron (NM_017721, intron 2 of 28)	AluY|SINE|Alu	4199	NM_017721	54862		NM_017721	ENSG00000132024	CC2D1A	Aki-1|FREUD-1|Freud-1/Aki1|Lgd2|MRT3|TAPE	coiled-coil and C2 domain containing 1A	protein-coding
154813	chr22	37020701	37020900	+	0	NA	promoter-TSS (NM_001270483)	promoter-TSS (NM_001270483)	-617	NM_001270483	7263		NM_003312	ENSG00000128311	TST	RDS	thiosulfate sulfurtransferase	protein-coding
9488	chr1	51214751	51215200	+	0	NA	intron (NR_147076, intron 1 of 1)	intron (NR_147076, intron 1 of 1)	20121	NR_147076	105378716		NR_147076	ENSG00000203356	LINC01562	-	long intergenic non-protein coding RNA 1562	ncRNA
162123	chr3	46934921	46935380	+	0	NA	intron (NM_144716, intron 3 of 7)	intron (NM_144716, intron 3 of 7)	41351	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
125612	chr2	18559401	18561500	+	0	NA	exon (NM_020905, exon 1 of 2)	exon (NM_020905, exon 1 of 2)	203	NM_020905	57665		NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14	protein-coding
93019	chr17	17236521	17238200	+	0	NA	promoter-TSS (NM_001353230)	promoter-TSS (NM_001353230)	-192	NM_144606	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
222029	chr8	130186651	130186750	+	0	NA	intron (NM_001362924, intron 7 of 30)	MIRb|SINE|MIR	-101932	NR_045385	100507117		NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA
69958	chr14	99687421	99688800	+	0	NA	intron (NM_006668, intron 1 of 14)	intron (NM_006668, intron 1 of 14)	3812	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
3236	chr1	13788401	13789300	+	0	NA	TTS (NM_001007257)	TTS (NM_001007257)	39435	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
184111	chr5	94107951	94108250	+	0	NA	intron (NR_028080, intron 1 of 8)	intron (NR_028080, intron 1 of 8)	3563	NM_032042	83989		NM_032042	ENSG00000113391	ARB2A	C5orf21|FAM172A|Toupee	ARB2 cotranscriptional regulator A	protein-coding
43654	chr11	85680771	85681330	+	0	NA	intron (NR_165401, intron 1 of 3)	MLT1L|LTR|ERVL-MaLR	1813	NR_165400	58487		NM_021212	ENSG00000137504	CREBZF	SMILE|ZF	CREB/ATF bZIP transcription factor	protein-coding
7556	chr1	35078771	35080250	+	0	NA	intron (NM_001319955, intron 1 of 8)	CpG	125	NM_024772	79830		NM_024772	ENSG00000197056	ZMYM1	MYM	zinc finger MYM-type containing 1	protein-coding
2119	chr1	8169451	8170750	+	0	NA	Intergenic	Intergenic	-38572	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
14525	chr1	144845271	144845430	+	0	NA	intron (NR_104189, intron 2 of 3).2	AluSg|SINE|Alu	127179	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
157115	chr22	42643071	42643830	+	0	NA	intron (NM_000398, intron 1 of 8)	(C)n|Simple_repeat|Simple_repeat	1184	NM_001171660	1727		NM_000398	ENSG00000100243	CYB5R3	B5R|DIA1	cytochrome b5 reductase 3	protein-coding
117195	chr19	19370071	19370830	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15393	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
66976	chr14	66459701	66459900	+	0	NA	Intergenic	Intergenic	-26571	NR_110307	440184		NM_001004331	ENSG00000196553	CCDC196	C14orf53|LINC00238|NCRNA00238	coiled-coil domain containing 196	protein-coding
140231	chr2	231765571	231766130	+	0	NA	intron (NM_001291018, intron 1 of 3)	intron (NM_001291018, intron 1 of 3)	15432	NM_002601	5147		NM_002601	ENSG00000156973	PDE6D	JBTS22|PDED	phosphodiesterase 6D	protein-coding
83131	chr16	22606701	22606900	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	61102	NR_003676	653786		NR_003676	ENSG00000290866	OTOAP1	-	OTOA pseudogene 1	pseudo
174376	chr4	38966051	38966150	+	0	NA	TTS (NM_024943)	TTS (NM_024943)	66309	NM_024943	80008		NM_024943	ENSG00000121895	TMEM156	-	transmembrane protein 156	protein-coding
100434	chr17	60886871	60887330	+	0	NA	intron (NM_001353144, intron 9 of 25)	L1PA2|LINE|L1	209249	NM_001330414	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
209307	chr7	76019671	76020500	+	0	NA	intron (NR_134487, intron 3 of 6)	intron (NR_134487, intron 3 of 6)	10439	NR_134487	51657		NM_016086	ENSG00000127952	STYXL1	DUSP24|MK-STYX|MKSTYX	serine/threonine/tyrosine interacting like 1	protein-coding
139309	chr2	219531371	219531530	+	0	NA	intron (NM_182847, intron 1 of 8)	L2a|LINE|L2	11647	NM_001195731	79586		NM_024536	ENSG00000123989	CHPF	CHPF1|CHSY2|CSS2	chondroitin polymerizing factor	protein-coding
150230	chr21	41283001	41283480	+	0	NA	TTS (NM_138992)	TTS (NM_138992)	-33561	NM_206964	54097		NM_058186	ENSG00000183844	FAM3B	2-21|C21orf11|C21orf76|ORF9|PANDER|PRED44	FAM3 metabolism regulating signaling molecule B	protein-coding
8021	chr1	38029951	38030980	+	0	NA	Intergenic	Intergenic	16328	NM_002699	5453		NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
180060	chr5	1088971	1089330	+	0	NA	intron (NM_006598, intron 3 of 23).2	CpG-21851	22913	NM_006598	10723		NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding
59493	chr13	26601851	26601950	+	0	NA	intron (NM_006646, intron 1 of 9)	intron (NM_006646, intron 1 of 9)	44197	NM_001291965	10810		NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	WASP family member 3	protein-coding
235764	chrX	49039671	49040600	+	0	NA	intron (NM_006521, intron 2 of 9)	intron (NM_006521, intron 2 of 9)	3222	NM_006521	7030		NM_006521	ENSG00000068323	TFE3	MRXSPF|RCCP2|RCCX1|TFEA|bHLHe33	transcription factor binding to IGHM enhancer 3	protein-coding
76987	chr15	78275071	78275430	+	0	NA	intron (NM_018602, intron 5 of 7)	intron (NM_018602, intron 5 of 7)	9032	NM_001130183	55466		NM_018602	ENSG00000140403	DNAJA4	MST104|MSTP104|PRO1472	DnaJ heat shock protein family (Hsp40) member A4	protein-coding
83838	chr16	28866771	28867630	+	0	NA	intron (NM_001145812, intron 2 of 9)	intron (NM_001145812, intron 2 of 9)	3207	NM_015503	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
82358	chr16	15969921	15970400	+	0	NA	intron (NM_004996, intron 1 of 30)	MLT1J|LTR|ERVL-MaLR	20544	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
132772	chr2	109818921	109819200	+	0	NA	intron (NM_032260, intron 8 of 19)	AluJb|SINE|Alu	24451	NM_001384364	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
224270	chr9	6079321	6079580	+	0	NA	Intergenic	HERVI-int|LTR|ERV1	-63826	NM_001243203	26953		NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding
53773	chr12	68792921	68793280	+	0	NA	Intergenic	Intergenic	12394	NR_073494	100130075		NR_073494		SZRD1P1	-	SZRD1 pseudogene 1	pseudo
202568	chr6	158679721	158679980	+	0	NA	intron (NM_001318745, intron 2 of 14)	intron (NM_001318745, intron 2 of 14)	16447	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
128258	chr2	54570951	54571580	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	12871	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
163414	chr3	50551371	50552030	+	0	NA	Intergenic	Intergenic	16047	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
222247	chr8	133201771	133202180	+	0	NA	intron (NM_001204870, intron 1 of 1)	L1MC5a|LINE|L1	10936	NM_080838	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
220025	chr8	90948301	90948500	+	0	NA	intron (NM_022351, intron 10 of 12)	intron (NM_022351, intron 10 of 12)	36677	NM_001363275	100127983		NM_001190972	ENSG00000253250	C8orf88	-	chromosome 8 open reading frame 88	protein-coding
142016	chr20	1651901	1652400	+	0	NA	intron (NM_018556, intron 1 of 5)	HERVL74-int|LTR|ERVL	5629	NM_080816	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
41564	chr11	66325051	66325800	+	0	NA	Intergenic	Intergenic	-8381	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
29151	chr10	68684301	68684900	+	0	NA	intron (NM_030625, intron 10 of 11)	intron (NM_030625, intron 10 of 11)	-36639	NM_001282960	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
192646	chr6	26166051	26166500	+	0	NA	intron (NM_138720, intron 1 of 1)	intron (NM_138720, intron 1 of 1)	8153	NM_021063	3017		NM_021063	ENSG00000158373	H2BC5	H2B.1B|H2B/a|H2B/b|H2B/g|H2B/h|H2B/k|H2B/l|H2BFA|H2BFB|H2BFG|H2BFH|H2BFK|H2BFL|HIRIP2|HIST1H2BC|HIST1H2BD|HIST1H2BE|HIST1H2BF|HIST1H2BG|HIST1H2BI|dJ221C16.6	H2B clustered histone 5	protein-coding
164592	chr3	66199271	66199650	+	0	NA	intron (NM_173471, intron 1 of 10)	(CCTGAC)n|Simple_repeat|Simple_repeat	-21282	NM_001350993	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
181386	chr5	40673371	40673930	+	0	NA	Intergenic	Intergenic	-6265	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
198824	chr6	109082301	109082500	+	0	NA	intron (NM_014454, intron 1 of 9)	MIRb|SINE|MIR	12446	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
222323	chr8	133510051	133510150	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	61787	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
98233	chr17	46158751	46159300	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	33757	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
219517	chr8	74320951	74321050	+	0	NA	exon (NM_020647, exon 1 of 6)	exon (NM_020647, exon 1 of 6)	361	NM_001363050	56704		NM_020647	ENSG00000104369	JPH1	CMT2K|JP-1|JP1	junctophilin 1	protein-coding
188316	chr5	151209251	151210280	+	0	NA	intron (NM_015621, intron 1 of 8)	AluJb|SINE|Alu	-2369	NR_160730	105378230		NR_160730		LOC105378230	-	uncharacterized LOC105378230	ncRNA
82196	chr16	14974001	14976700	+	0	NA	intron (NM_001324019, intron 1 of 22)	CpG	324	NM_001285445	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
29858	chr10	72358251	72358350	+	0	NA	Intergenic	LTR107_Mam|LTR|LTR	-3381	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
81592	chr16	10333251	10333600	+	0	NA	Intergenic	AluSc|SINE|Alu	-52636	NM_024997	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
5339	chr1	25256421	25256880	+	0	NA	intron (NR_135788, intron 1 of 3)	AluJb|SINE|Alu	-9131	NR_135143	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
224543	chr9	19269001	19269200	+	0	NA	intron (NM_001330640, intron 1 of 32)	L1M1|LINE|L1	38407	NR_073201	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
178171	chr4	142373821	142374380	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	29033	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
210294	chr7	99438271	99440130	+	0	NA	promoter-TSS (NM_001318162)	promoter-TSS (NM_001318162)	-176	NM_001318162	10898		NM_006693	ENSG00000160917	CPSF4	CPSF30|NAR|NEB-1|NEB1	cleavage and polyadenylation specific factor 4	protein-coding
26876	chr10	25252871	25253030	+	0	NA	intron (NM_020752, intron 2 of 10)	L1PA2|LINE|L1	-76674	NR_027333	100128811		NR_027333	ENSG00000233642	GPR158-AS1	-	GPR158 antisense RNA 1	ncRNA
94803	chr17	31266021	31266280	+	0	NA	intron (NM_001042492, intron 36 of 57)	MIRb|SINE|MIR	31089	NM_002544	4974		NM_002544	ENSG00000126861	OMG	OMGP	oligodendrocyte myelin glycoprotein	protein-coding
146925	chr20	51661401	51662080	+	0	NA	intron (NM_006045, intron 13 of 27)	intron (NM_006045, intron 13 of 27)	-98901	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
200410	chr6	134539951	134540350	+	0	NA	promoter-TSS (NR_125855)	promoter-TSS (NR_125855)	-145	NR_125856	101928304		NR_125855	ENSG00000232310	LINC03002	-	long intergenic non-protein coding RNA 3002	ncRNA
139003	chr2	218364501	218364700	+	0	NA	intron (NM_001320865, intron 6 of 9)	intron (NM_001320865, intron 6 of 9)	3302	NR_110573	101928513		NR_110573	ENSG00000225062	CATIP-AS1	-	CATIP antisense RNA 1	ncRNA
202596	chr6	158710951	158711050	+	0	NA	intron (NM_001242395, intron 8 of 15)	AluSx3|SINE|Alu	47597	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
56125	chr12	110867201	110867680	+	0	NA	intron (NM_152591, intron 4 of 11)	SVA_F|Retroposon|SVA	20453	NM_001286243	160762		NM_152591	ENSG00000173093	CCDC63	ODA5	coiled-coil domain containing 63	protein-coding
67601	chr14	72516721	72517380	+	0	NA	TTS (NR_106994)	TTS (NR_106994)	230	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
144167	chr20	34077021	34077280	+	0	NA	exon (NM_007367, exon 7 of 9)	exon (NM_007367, exon 7 of 9)	28031	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
219491	chr8	73880221	73881030	+	0	NA	non-coding (NR_147034, exon 1 of 3)	non-coding (NR_147034, exon 1 of 3)	1643	NR_147034	101926947		NR_147034		LINC01617	C8orf23|NCRNA00249|XLOC_006844	long intergenic non-protein coding RNA 1617	ncRNA
221358	chr8	123276971	123277130	+	0	NA	Intergenic	Intergenic	-1509	NR_037873	11244		NM_007222	ENSG00000165156	ZHX1	-	zinc fingers and homeoboxes 1	protein-coding
170341	chr3	184514771	184515030	+	0	NA	Intergenic	L2a|LINE|L2	42018	NR_046593	100874079		NR_046593	ENSG00000230215	LINC01840	EIF2B5-AS1	long intergenic non-protein coding RNA 1840	ncRNA
177729	chr4	122321521	122322450	+	0	NA	intron (NM_001384125, intron 64 of 87)	(T)n|Simple_repeat|Simple_repeat	-57026	NM_139243	132612		NM_139243	ENSG00000164113	ADAD1	Tenr	adenosine deaminase domain containing 1	protein-coding
30886	chr10	86960301	86961400	+	0	NA	intron (NM_003087, intron 3 of 4)	MIR|SINE|MIR	2251	NM_003087	6623		NM_003087	ENSG00000173267	SNCG	BCSG1|SR	synuclein gamma	protein-coding
167243	chr3	128492271	128492430	+	0	NA	intron (NR_125398, intron 2 of 2)	CpG-20230	851	NM_032638	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
70519	chr14	102316251	102317480	+	0	NA	promoter-TSS (NM_001267827)	promoter-TSS (NM_001267827)	-641	NM_001385074	55778		NM_018335	ENSG00000022976	ZNF839	C14orf131	zinc finger protein 839	protein-coding
167327	chr3	128739871	128740100	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSp|SINE|Alu	13802	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
211038	chr7	102424401	102424750	+	0	NA	intron (NR_038967, intron 8 of 8)	intron (NR_038967, intron 8 of 8)	-8955	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
52815	chr12	56985771	56985930	+	0	NA	Intergenic	Intergenic	-8642	NM_007264	11318		NM_007264	ENSG00000166856	GPR182	7TMR|ADMR|AM-R|AMR|G10D|L1-R|gamrh|hrhAMR	G protein-coupled receptor 182	protein-coding
150017	chr21	37222871	37223230	+	0	NA	TTS (NM_001331022)	TTS (NM_001331022)	14547	NR_026719	257203		NM_148675	ENSG00000230366	DSCR9	NCRNA00038	Down syndrome critical region 9	ncRNA
110097	chr19	1528821	1529280	+	0	NA	intron (NM_001243079, intron 9 of 13)	intron (NM_001243079, intron 9 of 13)	4973	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
122044	chr19	48643601	48643800	+	0	NA	intron (NR_136241, intron 3 of 8)	MIR|SINE|MIR	2487	NM_001217	770		NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
135537	chr2	162316401	162316600	+	0	NA	intron (NM_022168, intron 1 of 15)	intron (NM_022168, intron 1 of 15)	2184	NM_022168	64135		NM_022168	ENSG00000115267	IFIH1	AGS7|Hlcd|IDDM19|IMD95|MDA-5|MDA5|RLR-2|SGMRT1	interferon induced with helicase C domain 1	protein-coding
205539	chr7	19713401	19714050	+	0	NA	Intergenic	Intergenic	-4688	NM_001002926	221830		NM_001002926	ENSG00000105849	POLR1F	A43|RPA43|TWISTNB	RNA polymerase I subunit F	protein-coding
227292	chr9	89405421	89405680	+	0	NA	non-coding (NR_163888, exon 5 of 18)	non-coding (NR_163888, exon 5 of 18)	74340	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
195458	chr6	37008601	37008800	+	0	NA	intron (NM_173558, intron 1 of 15)	intron (NM_173558, intron 1 of 15)	3045	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
192990	chr6	28127321	28127580	+	0	NA	3' UTR (NM_001320558, exon 3 of 3)	3' UTR (NM_001320558, exon 3 of 3)	2841	NM_001320556	80345		NM_025231	ENSG00000196812	ZSCAN16	ZNF392|ZNF435|dJ265C24.3	zinc finger and SCAN domain containing 16	protein-coding
96872	chr17	42069751	42070050	+	0	NA	intron (NM_001378270, intron 1 of 8)	AluSq2|SINE|Alu	-19299	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
42853	chr11	73242271	73242900	+	0	NA	TTS (NM_002564)	TTS (NM_002564)	-21920	NM_001277205	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
43333	chr11	76459371	76459530	+	0	NA	intron (NM_020193, intron 5 of 20)	intron (NM_020193, intron 5 of 20)	14425	NM_020193	56946		NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY transcriptional repressor, BRCA2 interacting	protein-coding
216563	chr8	21909071	21909230	+	0	NA	3' UTR (NM_003974, exon 5 of 5)	3' UTR (NM_003974, exon 5 of 5)	4540	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
219760	chr8	81088951	81089930	+	0	NA	intron (NM_018440, intron 1 of 8)	AluY|SINE|Alu	22628	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
81261	chr16	4619051	4620250	+	0	NA	Intergenic	AluJb|SINE|Alu	-4762	NM_001330467	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
85269	chr16	48558251	48558830	+	0	NA	intron (NM_153029, intron 2 of 6)	intron (NM_153029, intron 2 of 6)	51640	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
122450	chr19	49497001	49498200	+	0	NA	promoter-TSS (NR_001285)	promoter-TSS (NR_001285)	-119	NR_001285	84546		NR_001285	ENSG00000200530	SNORD35B	RNU35B|U35B	small nucleolar RNA, C/D box 35B	snoRNA
65684	chr14	52706151	52707650	+	0	NA	promoter-TSS (NM_002806)	promoter-TSS (NM_002806)	-300	NR_158967	5706		NM_002806	ENSG00000100519	PSMC6	RPT5|SUG2|p42	proteasome 26S subunit, ATPase 6	protein-coding
106956	chr18	31555901	31556180	+	0	NA	non-coding (NR_045216, exon 1 of 6)	non-coding (NR_045216, exon 1 of 6)	871	NR_045216	100652770		NR_045216	ENSG00000264859	DSG2-AS1	-	DSG2 antisense RNA 1	ncRNA
83720	chr16	28513321	28513580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6616	NM_145659	246778		NM_145659	ENSG00000197272	IL27	IL-27|IL-27A|IL27A|IL27p28|IL30|p28	interleukin 27	protein-coding
167821	chr3	133592771	133593900	+	0	NA	Intergenic	Intergenic	18901	NM_001282765	55573		NM_017548	ENSG00000091527	CDV3	H41	CDV3 homolog	protein-coding
20455	chr1	198555601	198555800	+	0	NA	Intergenic	MIRb|SINE|MIR	-14755	NM_133326	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
62963	chr13	112286771	112286950	+	0	NA	Intergenic	Intergenic	-13860	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
172529	chr4	2297671	2298880	+	0	NA	intron (NM_020972, intron 8 of 12)	intron (NM_020972, intron 8 of 12)	-36166	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
143931	chr20	32741171	32741550	+	0	NA	intron (NM_053041, intron 1 of 8)	AluJo|SINE|Alu	2107	NM_001099339	149951		NM_053041	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
409	chr1	1068521	1070930	+	0	NA	promoter-TSS (NR_168433)	promoter-TSS (NR_168433)	-388	NR_168432	105378948		NR_168432		LOC105378948	-	uncharacterized LOC105378948	ncRNA
170847	chr3	190594271	190594450	+	0	NA	intron (NR_157352, intron 3 of 10)	MLT1J|LTR|ERVL-MaLR	80275	NM_134470	3556		NM_002182	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
12589	chr1	108965101	108965500	+	0	NA	Intergenic	L1MB3|LINE|L1	-1816	NM_001377461	23155		NM_015127	ENSG00000121940	CLCC1	MCLC|RP32	chloride channel CLIC like 1	protein-coding
233432	chr9	137613271	137613430	+	0	NA	intron (NM_001317968, intron 2 of 6)	intron (NM_001317968, intron 2 of 6)	5179	NR_122036	85026		NM_032937	ENSG00000203993	ARRDC1-AS1	C9orf37	ARRDC1 antisense RNA 1	ncRNA
215889	chr8	8029251	8029550	+	0	NA	Intergenic	Intergenic	-31879	NM_001037380	641517		NM_001037380	ENSG00000206034	DEFB109B	DEF109P1B|DEFB109|DEFB109P1B|HBD9	defensin beta 109B	protein-coding
125998	chr2	25307471	25307630	+	0	NA	intron (NR_135490, intron 2 of 23)	AluSq2|SINE|Alu	21171	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
106606	chr18	22281021	22281280	+	0	NA	Intergenic	Intergenic	111561	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
213129	chr7	131357671	131358030	+	0	NA	intron (NM_001321316, intron 1 of 17)	L1MC3|LINE|L1	29974	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
89363	chr16	88777471	88778230	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	7370	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
174349	chr4	38730601	38731430	+	0	NA	Intergenic	Intergenic	51975	NM_030956	81793		NM_030956	ENSG00000174123	TLR10	CD290	toll like receptor 10	protein-coding
18341	chr1	161201801	161203280	+	0	NA	intron (NR_165188, intron 1 of 11)	intron (NR_165188, intron 1 of 11)	173	NM_001377299	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
206100	chr7	27203471	27204000	+	0	NA	intron (NR_037843, intron 2 of 2)	intron (NR_037843, intron 2 of 2)	3314	NR_037843	100316868		NR_037843		HOTTIP	HOXA-AS6|HOXA13-AS1|NCRNA00213	HOXA distal transcript antisense RNA	ncRNA
153930	chr22	30332351	30332650	+	0	NA	3' UTR (NM_005877, exon 16 of 16)	3' UTR (NM_005877, exon 16 of 16)	-5559	NM_001204240	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
135316	chr2	160333451	160333980	+	0	NA	intron (NM_016836, intron 2 of 13)	intron (NM_016836, intron 2 of 13)	-61820	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
190675	chr5	181273101	181273650	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	12163	NR_102760	100507602		NR_102759	ENSG00000248275	TRIM52-AS1	-	TRIM52 antisense RNA 1 (head to head)	ncRNA
14899	chr1	147078051	147078500	+	0	NA	Intergenic	Intergenic	6481	NR_121645	101447996		NR_121645	ENSG00000286172	RNVU1-8	RNU1-145|vU1.8	RNA, variant U1 small nuclear 8	snRNA
134590	chr2	144277871	144278380	+	0	NA	intron (NM_001376309, intron 1 of 12)	intron (NM_001376309, intron 1 of 12)	16350	NM_001376328	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
148898	chr21	8467571	8468330	+	0	NA	Intergenic	AluSc|SINE|Alu	26804	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
24037	chr1	235280901	235281530	+	0	NA	intron (NM_016374, intron 2 of 23)	AluJb|SINE|Alu	-46001	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
164747	chr3	69050851	69053030	+	0	NA	intron (NM_001363879, intron 1 of 16)	intron (NM_001363879, intron 1 of 16)	393	NM_007114	7110		NM_007114	ENSG00000144747	TMF1	ARA160|TMF	TATA element modulatory factor 1	protein-coding
212487	chr7	128540921	128541180	+	0	NA	Intergenic	L1MEg|LINE|L1	64302	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
189088	chr5	170289901	170290750	+	0	NA	intron (NM_005565, intron 2 of 20)	MLT1J|LTR|ERVL-MaLR	7452	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
59075	chr13	20904521	20904980	+	0	NA	Intergenic	AluSx|SINE|Alu	-1976	NM_022459	64328		NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
151701	chr22	17302821	17303080	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-36217	NR_038398	27442		NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3	ncRNA
24814	chr10	233021	233280	+	0	NA	intron (NM_212479, intron 4 of 13)	MER5B|DNA|hAT-Charlie	53156	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
23664	chr1	231239801	231240000	+	0	NA	intron (NM_001300830, intron 1 of 6)	intron (NM_001300830, intron 1 of 6)	1275	NM_001300830	128061		NM_152379	ENSG00000143633	C1orf131	-	chromosome 1 open reading frame 131	protein-coding
169911	chr3	177681251	177681350	+	0	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-135565	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
105005	chr17	82026871	82027600	+	0	NA	intron (NM_144999, intron 6 of 16)	intron (NM_144999, intron 6 of 16)	3930	NM_144999	201255		NM_144999	ENSG00000169683	LRRC45	-	leucine rich repeat containing 45	protein-coding
104403	chr17	81047721	81048500	+	0	NA	intron (NR_169579, intron 2 of 15)	AluSz|SINE|Alu	-9624	NM_001385147	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
58680	chr12	132544471	132544630	+	0	NA	TTS (NM_001382743)	TTS (NM_001382743)	-37447	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
3194	chr1	13734451	13734550	+	0	NA	intron (NM_001135610, intron 4 of 7)	intron (NM_001135610, intron 4 of 7)	-14915	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
37055	chr11	12226201	12226600	+	0	NA	intron (NR_144415, intron 13 of 26)	intron (NR_144415, intron 13 of 26)	-60500	NM_032867	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
440	chr1	1115201	1117580	+	0	NA	promoter-TSS (NM_001330306)	promoter-TSS (NM_001330306)	-301	NM_001330306	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
182115	chr5	56090701	56090900	+	0	NA	Intergenic	Intergenic	95633	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
188537	chr5	156135951	156136050	+	0	NA	Intergenic	Intergenic	-191164	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
219336	chr8	70221001	70221650	+	0	NA	intron (NM_001321713, intron 2 of 21)	intron (NM_001321713, intron 2 of 21)	-150073	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
17113	chr1	156157421	156158480	+	0	NA	intron (NM_001370567, intron 2 of 13)	intron (NM_001370567, intron 2 of 13)	3402	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
207796	chr7	50265851	50266400	+	0	NA	Intergenic	Intergenic	-37939	NM_001291839	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
225148	chr9	33750851	33751700	+	0	NA	intron (NM_001197098, intron 1 of 4)	intron (NM_001197098, intron 1 of 4)	454	NM_001197098	5646		NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	serine protease 3	protein-coding
29410	chr10	70168351	70169500	+	0	NA	intron (NM_001142648, intron 1 of 7)	AluJb|SINE|Alu	1589	NM_001142648	56681		NM_020150	ENSG00000079332	SAR1A	SAR1|SARA1|Sara|masra2	secretion associated Ras related GTPase 1A	protein-coding
239161	chrY	11721951	11722130	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	699550	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
86904	chr16	68064051	68064150	+	0	NA	intron (NM_001271763, intron 6 of 14)	MIRc|SINE|MIR	-21270	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
7898	chr1	36606771	36607150	+	0	NA	Intergenic	Intergenic	-123646	NM_156039	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
141700	chr2	241823501	241824580	+	0	NA	Intergenic	CpG	12644	NM_080741	129807		NM_080741	ENSG00000204099	NEU4	-	neuraminidase 4	protein-coding
229056	chr9	114342501	114343080	+	0	NA	intron (NM_001317952, intron 18 of 20)	intron (NM_001317952, intron 18 of 20)	12921	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
20937	chr1	202210321	202210900	+	0	NA	intron (NM_021636, intron 1 of 17)	intron (NM_021636, intron 1 of 17)	-3545	NM_001017404	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
49161	chr12	14959971	14960200	+	0	NA	intron (NM_001321420, intron 1 of 6)	intron (NM_001321420, intron 1 of 6)	1195	NM_001321421	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
113144	chr19	8334551	8336130	+	0	NA	exon (NM_198471, exon 3 of 11)	exon (NM_198471, exon 3 of 11)	7922	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
43215	chr11	75433901	75434300	+	0	NA	TTS (NM_001351168)	TTS (NM_001351168)	-3471	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
19036	chr1	169689321	169689700	+	0	NA	Intergenic	MIRb|SINE|MIR	19347	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
158737	chr3	8968551	8968850	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-5228	NM_020165	56852		NM_020165	ENSG00000070950	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
44104	chr11	95921351	95921650	+	0	NA	intron (NM_201278, intron 1 of 16)	intron (NM_201278, intron 1 of 16)	2607	NM_016156	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
21554	chr1	206253021	206253280	+	0	NA	intron (NM_001377446, intron 2 of 21)	intron (NM_001377446, intron 2 of 21)	-47377	NM_001385243	729533		NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
191021	chr6	3109121	3109380	+	0	NA	intron (NM_001354931, intron 8 of 9)	L2c|LINE|L2	-9126	NR_026649	670		NM_004332	ENSG00000137274	BPHL	BPH-RP|MCNAA|VACVASE	biphenyl hydrolase like	protein-coding
38510	chr11	45886801	45887300	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	1399	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
60837	chr13	45422571	45423240	+	0	NA	Intergenic	L2c|LINE|L2	-4450	NM_001286806	253512		NM_001010875	ENSG00000174032	SLC25A30	KMCP1	solute carrier family 25 member 30	protein-coding
57798	chr12	123102321	123102580	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	3066	NM_001384665	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
21042	chr1	203040301	203040530	+	0	NA	intron (NM_001304332, intron 2 of 28)	intron (NM_001304332, intron 2 of 28)	13924	NM_001304332	8497		NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding
180119	chr5	1299501	1299980	+	0	NA	Intergenic	Intergenic	-4672	NM_001193376	7015		NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding
64914	chr14	35415501	35416490	+	0	NA	Intergenic	Intergenic	-11246	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
365	chr1	1026501	1027330	+	0	NA	intron (NM_198576, intron 2 of 35)	intron (NM_198576, intron 2 of 35)	6795	NM_198576	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
181501	chr5	43009201	43010030	+	0	NA	Intergenic	AluSx1|SINE|Alu	9196	NR_034086	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
53253	chr12	62631921	62632830	+	0	NA	Intergenic	CpG	28689	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
143759	chr20	32383451	32383750	+	0	NA	intron (NM_015338, intron 3 of 11)	AluY|SINE|Alu	24535	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
210788	chr7	100802171	100802330	+	0	NA	TTS (NM_004444)	TTS (NM_004444)	-24619	NM_001363494	56996		NM_020246	ENSG00000146828	SLC12A9	CCC6|CIP1|WO3.3|hCCC6	solute carrier family 12 member 9	protein-coding
137572	chr2	197258701	197259680	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	43329	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
207768	chr7	50155771	50156250	+	0	NA	intron (NM_001161834, intron 8 of 8)	intron (NM_001161834, intron 8 of 8)	60127	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
95733	chr17	38582121	38582800	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	23492	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
49868	chr12	37566151	37566250	+	0	NA	Intergenic	Intergenic	-750574	NM_001308340	144245		NM_001013620	ENSG00000175548	ALG10B	ALG10|KCR1	ALG10 alpha-1,2-glucosyltransferase B	protein-coding
90971	chr17	2696621	2697000	+	0	NA	exon (NM_001366662, exon 11 of 26)	exon (NM_001366662, exon 11 of 26)	-3891	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
165348	chr3	88160921	88161300	+	0	NA	Intergenic	AluY|SINE|Alu	11151	NM_173824	285237		NM_173824	ENSG00000179021	C3orf38	-	chromosome 3 open reading frame 38	protein-coding
209801	chr7	87874251	87874700	+	0	NA	intron (NM_018843, intron 1 of 11)	intron (NM_018843, intron 1 of 11)	1885	NM_018843	55972		NM_018843	ENSG00000075303	SLC25A40	MCFP	solute carrier family 25 member 40	protein-coding
30201	chr10	74750701	74751300	+	0	NA	Intergenic	Intergenic	-74255	NM_001370139	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
144239	chr20	34474951	34475580	+	0	NA	intron (NM_031483, intron 16 of 24)	SVA_D|Retroposon|SVA	8940	NR_030374	693229		NR_030374	ENSG00000207997	MIR644A	MIR644|MIRN644|hsa-mir-644|hsa-mir-644a	microRNA 644a	ncRNA
235286	chrX	41932601	41933080	+	0	NA	Intergenic	L1MB2|LINE|L1	-9286	NM_001367721	8573		NM_003688	ENSG00000147044	CASK	CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK	calcium/calmodulin dependent serine protein kinase	protein-coding
90302	chr17	1062221	1062480	+	0	NA	intron (NM_001282149, intron 5 of 17).3	intron (NM_001282149, intron 5 of 17).3	16643	NM_001282149	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
209665	chr7	79272251	79272350	+	0	NA	intron (NM_012301, intron 1 of 21)	intron (NM_012301, intron 1 of 21)	-180657	NR_038346	100505881		NR_038343	ENSG00000234456	MAGI2-AS3	-	MAGI2 antisense RNA 3	ncRNA
88769	chr16	87062751	87062930	+	0	NA	non-coding (NR_126008, exon 3 of 3)	non-coding (NR_126008, exon 3 of 3)	5056	NR_126008	440390		NR_126008	ENSG00000232190	LINC02181	-	long intergenic non-protein coding RNA 2181	ncRNA
162770	chr3	49081051	49081150	+	0	NA	intron (NM_001320584, intron 1 of 9)	HAL1ME|LINE|L1	12532	NM_001320581	54870		NM_017730	ENSG00000198218	QRICH1	AB-DIP|VERBRAS	glutamine rich 1	protein-coding
92154	chr17	7672571	7672730	+	0	NA	intron (NM_000546, intron 9 of 10)	AluJr4|SINE|Alu	2594	NM_001276699	7157		NM_000546	ENSG00000141510	TP53	BCC7|BMFS5|LFS1|P53|TRP53	tumor protein p53	protein-coding
71700	chr15	20249471	20249830	+	0	NA	Intergenic	Intergenic	-33094	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
170525	chr3	186573401	186573600	+	0	NA	intron (NR_165643, intron 2 of 9)	AluY|SINE|Alu	2780	NR_165640	51726		NM_016306	ENSG00000090520	DNAJB11	ABBP-2|ABBP2|DJ9|Dj-9|EDJ|ERdj3|ERj3|ERj3p|PKD6|PRO1080|UNQ537	DnaJ heat shock protein family (Hsp40) member B11	protein-coding
125966	chr2	25244021	25244280	+	0	NA	intron (NR_135490, intron 15 of 23)	intron (NR_135490, intron 15 of 23)	7981	NM_001320893	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
223691	chr8	144422751	144423450	+	0	NA	TTS (NM_183057)	TTS (NM_183057)	5448	NM_016208	51160		NM_016208	ENSG00000160948	VPS28	CIIA	VPS28 subunit of ESCRT-I	protein-coding
151639	chr22	16566921	16567500	+	0	NA	Intergenic	(CAAGCCAGC)n|Simple_repeat|Simple_repeat	25600	NM_014406	150160		NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
69241	chr14	92850201	92850400	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	55995	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
36796	chr11	9529021	9529480	+	0	NA	TTS (NM_003442)	TTS (NM_003442)	-44420	NM_003390	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
111926	chr19	4727601	4728400	+	0	NA	Intergenic	AluJr|SINE|Alu	-4158	NR_169285	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
33458	chr10	119049471	119049630	+	0	NA	intron (NM_003750, intron 17 of 21)	intron (NM_003750, intron 17 of 21)	10588	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
101842	chr17	73952421	73953050	+	0	NA	Intergenic	CpG	-124198	NR_027146	283982		NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
60014	chr13	32531821	32532080	+	0	NA	intron (NM_001278432, intron 2 of 9)	MLT1D|LTR|ERVL-MaLR	6845	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
5302	chr1	25214321	25214580	+	0	NA	Intergenic	AluYa5|SINE|Alu	18052	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
8346	chr1	40205501	40205700	+	0	NA	intron (NM_012421, intron 5 of 7)	AluY|SINE|Alu	-42337	NM_001008740	127391		NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
98315	chr17	46250951	46251450	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-25833	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
90748	chr17	2038971	2039430	+	0	NA	intron (NR_144476, intron 6 of 12)	AluSc8|SINE|Alu	-2822	NM_080822	124641		NM_080822	ENSG00000262664	OVCA2	-	OVCA2 serine hydrolase domain containing	protein-coding
94071	chr17	27471351	27472530	+	0	NA	promoter-TSS (NM_014238)	promoter-TSS (NM_014238)	-24	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
91046	chr17	2905201	2905600	+	0	NA	intron (NM_001100398, intron 3 of 23)	intron (NM_001100398, intron 3 of 23)	60495	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
75926	chr15	70103071	70103430	+	0	NA	Intergenic	Intergenic	-5333	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
20306	chr1	197354871	197355130	+	0	NA	intron (NM_201253, intron 4 of 11)	LTR12C|LTR|ERV1	86748	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
22863	chr1	225477801	225478450	+	0	NA	Intergenic	L2|LINE|L2	-49270	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
213994	chr7	142856451	142856550	+	0	NA	intron (NM_004445, intron 1 of 19).2	intron (NM_004445, intron 1 of 19).2	1424	NM_004445	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
236860	chrX	79408821	79409250	+	0	NA	Intergenic	L1PA11|LINE|L1	-41483	NM_001171581	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
192679	chr6	26241871	26242030	+	0	NA	Intergenic	AluSz|SINE|Alu	1557	NM_003540	8361		NM_003540	ENSG00000274618	H4C6	H4|H4-16|H4/c|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C8|H4C9|H4FC|HIST1H4F	H4 clustered histone 6	protein-coding
88538	chr16	85440951	85441480	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-134890	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
174043	chr4	26875821	26876330	+	0	NA	intron (NM_020860, intron 1 of 11)	Tigger20a|DNA|TcMar-Tigger	15234	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
148866	chr21	8432001	8432600	+	0	NA	promoter-TSS (NR_106782).4	promoter-TSS (NR_106782).4	-230	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
78903	chr15	101128771	101128930	+	0	NA	Intergenic	Intergenic	123198	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
137465	chr2	197052321	197053380	+	0	NA	intron (NM_001195144, intron 16 of 27)	intron (NM_001195144, intron 16 of 27)	-126143	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
175445	chr4	71196901	71197100	+	0	NA	intron (NM_001134742, intron 1 of 24)	AluSx1|SINE|Alu	9741	NM_001098484	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
102124	chr17	75044801	75045430	+	0	NA	intron (NM_001003785, intron 1 of 4)	MER11C|LTR|ERVK	1854	NM_006356	10476		NM_006356	ENSG00000167863	ATP5PD	APT5H|ATP5H|ATPQ	ATP synthase peripheral stalk subunit d	protein-coding
64066	chr14	22558251	22559450	+	0	NA	Intergenic	Intergenic	-1788	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
46323	chr11	125345651	125346000	+	0	NA	intron (NR_168080, intron 3 of 10)	intron (NR_168080, intron 3 of 10)	-149389	NR_164146	403312		NM_203452	ENSG00000255537	LOC403312	-	putative uncharacterized protein MGC39545	ncRNA
196361	chr6	43230451	43230550	+	0	NA	Intergenic	LTR62|LTR|ERVL	-1019	NM_006443	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
195514	chr6	37205651	37206380	+	0	NA	Intergenic	Intergenic	35863	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
179052	chr4	165325571	165326050	+	0	NA	Intergenic	LTR26|LTR|ERV1	-1856	NM_001017369	6307		NM_006745	ENSG00000052802	MSMO1	DESP4|ERG25|MCCPD|SC4MOL	methylsterol monooxygenase 1	protein-coding
208840	chr7	73695651	73695950	+	0	NA	intron (NR_045512, intron 9 of 10)	L2a|LINE|L2	12203	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
58037	chr12	124452921	124454350	+	0	NA	intron (NM_001077261, intron 8 of 47)	intron (NM_001077261, intron 8 of 47)	113977	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
126515	chr2	28420971	28421130	+	0	NA	Intergenic	Intergenic	-26378	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
100995	chr17	64637871	64638230	+	0	NA	intron (NM_022739, intron 1 of 18)	AluSz|SINE|Alu	24257	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
233484	chr9	137828701	137828900	+	0	NA	intron (NM_024757, intron 25 of 26)	intron (NM_024757, intron 25 of 26)	-9619	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	ncRNA
46475	chr11	128304621	128306530	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	96809	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
208375	chr7	66652201	66652630	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-2104	NR_110037	100996437		NR_110037	ENSG00000226824	LOC100996437	-	uncharacterized LOC100996437	ncRNA
29311	chr10	69334451	69334550	+	0	NA	intron (NM_000188, intron 1 of 17)	intron (NM_000188, intron 1 of 17)	15653	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
40021	chr11	62668771	62668930	+	0	NA	TTS (NM_001043229)	TTS (NM_001043229)	-2823	NM_001085372	790955		NM_001085372	ENSG00000204922	UQCC3	C11orf83|CCDS41658.1|MC3DN9|UNQ655	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding
160433	chr3	28325251	28325580	+	0	NA	TTS (NM_001331185)	TTS (NM_001331185)	-23306	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
2238	chr1	8869351	8870450	+	0	NA	intron (NM_001353346, intron 4 of 11)	Charlie15a|DNA|hAT-Charlie	-3310	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
31974	chr10	100742971	100743130	+	0	NA	intron (NM_001374303, intron 1 of 2)	intron (NM_001374303, intron 1 of 2)	-2532	NM_003987	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
110779	chr19	2429371	2429630	+	0	NA	3' UTR (NM_032737, exon 12 of 12)	3' UTR (NM_032737, exon 12 of 12)	-1914	NM_012458	26517		NM_012458	ENSG00000099800	TIMM13	TIM13|TIM13B|TIMM13A|TIMM13B|ppv1	translocase of inner mitochondrial membrane 13	protein-coding
216421	chr8	19372051	19372360	+	0	NA	intron (NR_156444, intron 7 of 8)	L1MA4|LINE|L1	58229	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
137227	chr2	191623621	191624080	+	0	NA	Intergenic	Intergenic	-54222	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
207229	chr7	43691751	43692150	+	0	NA	intron (NM_001321199, intron 1 of 6)	L1M3a|LINE|L1	37573	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
137343	chr2	196142851	196143330	+	0	NA	intron (NM_004226, intron 5 of 7)	intron (NM_004226, intron 5 of 7)	28488	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
236473	chrX	71614951	71615050	+	0	NA	TTS (NM_001142797)	TTS (NM_001142797)	3511	NM_001142797	2833		NM_001504	ENSG00000186810	CXCR3	CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR	C-X-C motif chemokine receptor 3	protein-coding
175363	chr4	70601351	70601750	+	0	NA	exon (NM_016519, exon 6 of 13)	exon (NM_016519, exon 6 of 13)	9294	NM_016519	258		NM_016519	ENSG00000178522	AMBN	AI1F	ameloblastin	protein-coding
91204	chr17	3912651	3913130	+	0	NA	intron (NM_002558, intron 1 of 11)	intron (NM_002558, intron 1 of 11)	3575	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
103413	chr17	78212801	78213400	+	0	NA	Intergenic	AluSz|SINE|Alu	-1153	NM_001012271	332		NM_001168	ENSG00000089685	BIRC5	API4|EPR-1	baculoviral IAP repeat containing 5	protein-coding
47085	chr12	628771	628930	+	0	NA	intron (NM_016533, intron 1 of 3)	MER41B|LTR|ERV1	-2041	NR_122124	100049716		NR_122124	ENSG00000177406	NINJ2-AS1	-	NINJ2 antisense RNA 1	ncRNA
67379	chr14	69771401	69771630	+	0	NA	3' UTR (NM_006925, exon 8 of 8)	3' UTR (NM_006925, exon 8 of 8)	-3802	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
65810	chr14	54805551	54806180	+	0	NA	Intergenic	Intergenic	51032	NM_001161577	23034		NM_015589	ENSG00000020577	SAMD4A	SAMD4|SMAUG|SMAUG1|SMG|SMGA	sterile alpha motif domain containing 4A	protein-coding
120008	chr19	41932471	41933200	+	0	NA	Intergenic	Intergenic	4015	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
53135	chr12	57843401	57843880	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	3089	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
79426	chr16	699021	699730	+	0	NA	intron (NM_153350, intron 1 of 5)	intron (NM_153350, intron 1 of 5)	6426	NM_153350	146330		NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding
60966	chr13	46596001	46596200	+	0	NA	intron (NM_015116, intron 1 of 18)	intron (NM_015116, intron 1 of 18)	42930	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
237024	chrX	102659721	102660580	+	0	NA	intron (NR_146585, intron 1 of 6)	intron (NR_146585, intron 1 of 6)	167	NR_146585	100528062		NM_001199818	ENSG00000286237	ARMCX5-GPRASP2	ARMCX5-GPRASP2-BHLHB9-LINC00630|GPRASP3|bHLHb9|p60TRP	ARMCX5-GPRASP2 readthrough	protein-coding
18440	chr1	161522101	161522730	+	0	NA	Intergenic	Intergenic	-2125	NM_002155	3310		NM_002155	ENSG00000173110	HSPA6	HSP70B'	heat shock protein family A (Hsp70) member 6	protein-coding
149995	chr21	36979921	36980180	+	0	NA	intron (NR_148020, intron 1 of 10)	AluJb|SINE|Alu	847	NM_001352516	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
134170	chr2	134253351	134253650	+	0	NA	promoter-TSS (NM_002410)	promoter-TSS (NM_002410)	-572	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
44921	chr11	115501871	115502380	+	0	NA	intron (NM_001301043, intron 1 of 11)	intron (NM_001301043, intron 1 of 11)	2290	NM_001301045	23705		NM_014333	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
238158	chrX	136782071	136782230	+	0	NA	Intergenic	MER117|DNA|hAT-Charlie	-1218	NM_004840	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
182054	chr5	55932501	55932700	+	0	NA	Intergenic	MIR3|SINE|MIR	62363	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
39216	chr11	57565701	57566850	+	0	NA	intron (NM_198183, intron 1 of 3)	intron (NM_198183, intron 1 of 3)	1397	NM_004223	9246		NM_004223	ENSG00000156587	UBE2L6	RIG-B|UBCH8	ubiquitin conjugating enzyme E2 L6	protein-coding
234676	chrX	20255871	20257130	+	0	NA	intron (NM_004586, intron 1 of 21)	intron (NM_004586, intron 1 of 21)	10409	NM_004586	6197		NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|XLID19|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
226883	chr9	78234101	78234500	+	0	NA	Intergenic	L2c|LINE|L2	-1775	NM_001098802	84131		NM_032171	ENSG00000148019	CEP78	C9orf81|CRDHL|IP63	centrosomal protein 78	protein-coding
200145	chr6	130293801	130294030	+	0	NA	intron (NM_001258275, intron 2 of 13)	intron (NM_001258275, intron 2 of 13)	-70964	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
58814	chr12	132817851	132817950	+	0	NA	intron (NM_005895, intron 2 of 23)	intron (NM_005895, intron 2 of 23)	10489	NM_005895	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
89803	chr16	89515051	89515150	+	0	NA	intron (NM_199367, intron 3 of 9)	AluY|SINE|Alu	6697	NM_003119	6687		NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7 matrix AAA peptidase subunit, paraplegin	protein-coding
172038	chr4	1001601	1001800	+	0	NA	exon (NM_000203, exon 6 of 14)	exon (NM_000203, exon 6 of 14)	1990	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
223874	chr9	223071	223230	+	0	NA	intron (NM_203447, intron 1 of 47)	intron (NM_203447, intron 1 of 47)	-7400	NR_160804	157983		NM_152569	ENSG00000183784	DOCK8-AS1	C9orf66	DOCK8 antisense RNA 1	ncRNA
24680	chr1	247169151	247169550	+	0	NA	intron (NM_003431, intron 1 of 3)	intron (NM_003431, intron 1 of 3)	2667	NM_001297567	7678		NM_003431	ENSG00000196418	ZNF124	HZF-16|HZF16|ZK7	zinc finger protein 124	protein-coding
164068	chr3	53888371	53888530	+	0	NA	exon (NM_021237, exon 2 of 5)	exon (NM_021237, exon 2 of 5)	3409	NM_021237	58515		NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
148354	chr20	63842401	63842800	+	0	NA	Intergenic	Intergenic	-11336	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
105936	chr18	3593371	3595060	+	0	NA	non-coding (NR_024101, exon 1 of 3)	non-coding (NR_024101, exon 1 of 3)	101	NR_024101	649446		NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
202092	chr6	154382551	154382650	+	0	NA	Intergenic	Intergenic	-25834	NM_015553	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
144987	chr20	37382321	37382580	+	0	NA	intron (NM_198291, intron 2 of 13)	intron (NM_198291, intron 2 of 13)	36310	NM_198291	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
228091	chr9	96420301	96421280	+	0	NA	Intergenic	Intergenic	-2420	NM_153695	195828		NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding
163558	chr3	51721301	51721500	+	0	NA	Intergenic	Intergenic	14332	NM_001349117	2912		NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate metabotropic receptor 2	protein-coding
32130	chr10	101235751	101237000	+	0	NA	intron (NR_029380, intron 2 of 2)	CpG	6781	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
157440	chr22	45236971	45237350	+	0	NA	intron (NM_001009880, intron 1 of 9)	intron (NM_001009880, intron 1 of 9)	3734	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
86828	chr16	67885651	67885950	+	0	NA	exon (NM_001348682, exon 2 of 3)	exon (NM_001348682, exon 2 of 3)	915	NM_198443	123904		NM_198443	ENSG00000188038	NRN1L	MRCC2446|UNQ2446|cpg15-2	neuritin 1 like	protein-coding
107244	chr18	38575501	38575900	+	0	NA	Intergenic	Intergenic	918565	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
229635	chr9	124197201	124197800	+	0	NA	Intergenic	Intergenic	-60106	NM_001166167	10783		NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
11597	chr1	91591171	91591530	+	0	NA	Intergenic	Intergenic	90242	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
115878	chr19	16569471	16569630	+	0	NA	intron (NM_024881, intron 2 of 5)	intron (NM_024881, intron 2 of 5)	2865	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
169209	chr3	157028101	157028300	+	0	NA	exon (NM_001004316, exon 12 of 13)	exon (NM_001004316, exon 12 of 13)	-53641	NR_135546	105374177		NR_135546	ENSG00000241544	LINC02029	-	long intergenic non-protein coding RNA 2029	ncRNA
86121	chr16	57671021	57671280	+	0	NA	intron (NM_170776, intron 1 of 11)	L1ME3G|LINE|L1	2844	NM_001308360	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
172974	chr4	3964021	3964480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8822	NR_130740	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
20866	chr1	202119001	202119250	+	0	NA	Intergenic	Intergenic	-3792	NM_004767	9283		NM_004767	ENSG00000170075	GPR37L1	ET(B)R-LP-2|ETBR-LP-2|ETBRLP2	G protein-coupled receptor 37 like 1	protein-coding
22303	chr1	213050921	213051800	+	0	NA	non-coding (NR_146207, exon 1 of 14)	non-coding (NR_146207, exon 1 of 14)	119	NM_012424	26750		NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding
132147	chr2	101732401	101732600	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	34235	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
202149	chr6	155173701	155174080	+	0	NA	intron (NM_001384547, intron 8 of 25)	intron (NM_001384547, intron 8 of 25)	-43076	NM_001010927	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
49742	chr12	31723001	31724180	+	0	NA	intron (NM_001278412, intron 1 of 8)	HERVL40-int|LTR|ERVL	5431	NM_001113402	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
141057	chr2	238255101	238255480	+	0	NA	intron (NM_022817, intron 18 of 22)	intron (NM_022817, intron 18 of 22)	-15252	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
101275	chr17	66372271	66372630	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	44404	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
164096	chr3	56593421	56594500	+	0	NA	exon (NM_001353148, exon 10 of 18)	exon (NM_001353148, exon 10 of 18)	36785	NM_001141947	285331		NM_001012506	ENSG00000180376	CCDC66	-	coiled-coil domain containing 66	protein-coding
147441	chr20	58911621	58912600	+	0	NA	TTS (NM_001077490)	TTS (NM_001077490)	19947	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
77208	chr15	80987271	80987430	+	0	NA	intron (NR_126327, intron 1 of 4)	intron (NR_126327, intron 1 of 4)	2469	NR_126327	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
21335	chr1	204551221	204551480	+	0	NA	3' UTR (NM_001278518, exon 7 of 7)	3' UTR (NM_001278518, exon 7 of 7)	34944	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
237942	chrX	132489701	132490380	+	0	NA	promoter-TSS (NM_001170704)	promoter-TSS (NM_001170704)	-5	NM_001170704	55796		NM_018388	ENSG00000076770	MBNL3	CHCR|MBLX|MBLX39|MBXL	muscleblind like splicing regulator 3	protein-coding
142512	chr20	4820201	4820600	+	0	NA	intron (NM_014737, intron 2 of 11)	AluJr|SINE|Alu	3208	NM_014737	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
43488	chr11	78414271	78414950	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	3210	NM_080491	9846		NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
51290	chr12	51237771	51240250	+	0	NA	intron (NM_001136264, intron 1 of 4)	CpG	184	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
188248	chr5	151059301	151060180	+	0	NA	intron (NM_006058, intron 5 of 17)	intron (NM_006058, intron 5 of 17)	5391	NM_001258455	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
82811	chr16	21480001	21480400	+	0	NA	intron (NR_027155, intron 3 of 28)	intron (NR_027155, intron 3 of 28)	-21326	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
137192	chr2	191145921	191146600	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	4734	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
230641	chr9	128682321	128683100	+	0	NA	promoter-TSS (NM_001374326)	promoter-TSS (NM_001374326)	-714	NM_001374326	6418		NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|MRD58|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding
102999	chr17	76756301	76756500	+	0	NA	intron (NR_148239, intron 8 of 12)	AluSz|SINE|Alu	18722	NM_001242532	79157		NM_024311	ENSG00000092931	MFSD11	ET	major facilitator superfamily domain containing 11	protein-coding
42447	chr11	69311171	69311330	+	0	NA	Intergenic	Intergenic	17095	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
232997	chr9	137000101	137001230	+	0	NA	Intergenic	Intergenic	-4097	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
81386	chr16	5091071	5091430	+	0	NA	intron (NM_001289029, intron 2 of 5)	AluSq2|SINE|Alu	6545	NM_201400	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
25910	chr10	11301201	11302250	+	0	NA	intron (NM_001326330, intron 9 of 12)	intron (NM_001326330, intron 9 of 12)	42949	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
51265	chr12	51081701	51081900	+	0	NA	intron (NM_030809, intron 1 of 4)	intron (NM_030809, intron 1 of 4)	1796	NR_045072	81566		NM_030809	ENSG00000110925	CSRNP2	C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12	cysteine and serine rich nuclear protein 2	protein-coding
82118	chr16	14693101	14693330	+	0	NA	intron (NM_003561, intron 1 of 3).2	intron (NM_003561, intron 1 of 3).2	1093	NM_003561	8399		NM_003561	ENSG00000069764	PLA2G10	GXPLA2|GXSPLA2|SPLA2|sPLA2-X	phospholipase A2 group X	protein-coding
189972	chr5	177443171	177443750	+	0	NA	TTS (NM_002082)	TTS (NM_002082)	-2535	NM_001375593	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
207047	chr7	39592571	39592930	+	0	NA	intron (NM_001282446, intron 2 of 2)	L1MEb|LINE|L1	26346	NM_001282446	57002		NM_020192	ENSG00000241127	YAE1	C7orf36|CIAB2|GK003|YAE1D1	YAE1 maturation factor of ABCE1	protein-coding
90862	chr17	2370701	2371300	+	0	NA	intron (NM_014853, intron 12 of 23)	intron (NM_014853, intron 12 of 23)	30060	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
137049	chr2	190885151	190885850	+	0	NA	intron (NM_014905, intron 1 of 17)	intron (NM_014905, intron 1 of 17)	4679	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
175069	chr4	54059721	54059980	+	0	NA	intron (NM_012110, intron 1 of 5)	L2c|LINE|L2	4755	NM_012110	26511		NM_012110	ENSG00000109220	CHIC2	BTL	cysteine rich hydrophobic domain 2	protein-coding
112775	chr19	7470371	7470730	+	0	NA	3' UTR (NM_001130955, exon 20 of 20)	3' UTR (NM_001130955, exon 20 of 20)	18485	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
201451	chr6	148451771	148451930	+	0	NA	intron (NM_001346506, intron 5 of 20)	intron (NM_001346506, intron 5 of 20)	-56649	NM_001346507	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
13176	chr1	112395751	112397030	+	0	NA	intron (NM_018704, intron 1 of 5)	intron (NM_018704, intron 1 of 5)	176	NM_018704	55917		NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
8988	chr1	44650451	44650750	+	0	NA	intron (NM_001319957, intron 13 of 13)	intron (NM_001319957, intron 13 of 13)	18632	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
1729	chr1	5937171	5937350	+	0	NA	intron (NR_111987, intron 9 of 32)	MLT1D|LTR|ERVL-MaLR	55165	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
49308	chr12	21466821	21467080	+	0	NA	intron (NM_001350913, intron 9 of 10)	intron (NM_001350913, intron 9 of 10)	29035	NM_001350912	79912		NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
227738	chr9	93066871	93067030	+	0	NA	intron (NM_001287007, intron 1 of 2)	AluSx|SINE|Alu	8249	NM_001287007	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
31627	chr10	97383901	97384580	+	0	NA	intron (NM_015179, intron 10 of 33)	intron (NM_015179, intron 10 of 33)	17100	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
16205	chr1	153868301	153868700	+	0	NA	intron (NM_020699, intron 1 of 10)	Charlie1a|DNA|hAT-Charlie	54472	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
62002	chr13	80952251	80952450	+	0	NA	Intergenic	L1MD1|LINE|L1	-66041	NR_125770	103724386		NR_125770		LINC00377	TCONS_00021861	long intergenic non-protein coding RNA 377	ncRNA
164404	chr3	58483271	58483550	+	0	NA	Intergenic	Intergenic	-8686	NM_001128214	200845		NM_153331	ENSG00000168301	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
111544	chr19	4036521	4037730	+	0	NA	intron (NM_015897, intron 9 of 10)	intron (NM_015897, intron 9 of 10)	28404	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
3280	chr1	15251001	15251200	+	0	NA	intron (NM_052929, intron 1 of 30)	AluJb|SINE|Alu	3875	NM_052929	114827		NM_052929	ENSG00000142621	FHAD1	-	forkhead associated phosphopeptide binding domain 1	protein-coding
68478	chr14	87992301	87993780	+	0	NA	exon (NM_000153, exon 1 of 17)	exon (NM_000153, exon 1 of 17)	142	NM_000153	2581		NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
5603	chr1	26044171	26044530	+	0	NA	exon (NM_001004434, exon 3 of 8)	exon (NM_001004434, exon 3 of 8)	1768	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
150332	chr21	42077871	42078730	+	0	NA	intron (NM_173568, intron 2 of 21)	intron (NM_173568, intron 2 of 21)	6983	NM_001004416	89766		NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding
222538	chr8	140586721	140586980	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	48783	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
149482	chr21	31974421	31974880	+	0	NA	exon (NM_014586, exon 7 of 11)	exon (NM_014586, exon 7 of 11)	101630	NM_014586	30811		NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
89071	chr16	88460521	88461330	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	7645	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
175110	chr4	54633051	54633350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-24757	NM_001385284	3815		NM_000222	ENSG00000157404	KIT	C-Kit|CD117|MASTC|PBT|SCFR	KIT proto-oncogene, receptor tyrosine kinase	protein-coding
104647	chr17	81457401	81458600	+	0	NA	intron (NM_001377448, intron 17 of 27)	intron (NM_001377448, intron 17 of 27)	-6812	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
234649	chrX	20125001	20125600	+	0	NA	3' UTR (NM_001412, exon 7 of 7)	3' UTR (NM_001412, exon 7 of 7)	-8393	NM_001168466	256714		NM_152780	ENSG00000184368	MAP7D2	-	MAP7 domain containing 2	protein-coding
93057	chr17	17475301	17475630	+	0	NA	Intergenic	Intergenic	-1535	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
33684	chr10	119900151	119900530	+	0	NA	intron (NM_007190, intron 2 of 18)	AluJo|SINE|Alu	7610	NM_007190	11196		NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A|iPLA1A|iPLA1beta	SEC23 interacting protein	protein-coding
120464	chr19	44691921	44693030	+	0	NA	Intergenic	Intergenic	-6676	NM_001039213	388551		NM_001039213	ENSG00000213892	CEACAM16	CEAL2|DFNA4B|DFNB113	CEA cell adhesion molecule 16, tectorial membrane component	protein-coding
117575	chr19	21463451	21464000	+	0	NA	Intergenic	CpG	-19990	NR_037194	400680		NR_037194	ENSG00000268658	LINC00664	-	long intergenic non-protein coding RNA 664	ncRNA
224372	chr9	7935371	7936380	+	0	NA	Intergenic	Intergenic	-136097	NM_001318059	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
166706	chr3	120642571	120642750	+	0	NA	intron (NM_000187, intron 10 of 13)	MER63A|DNA|hAT-Blackjack	39579	NM_000187	3081		NM_000187	ENSG00000113924	HGD	AKU|HGO	homogentisate 1,2-dioxygenase	protein-coding
183101	chr5	74628151	74628650	+	0	NA	non-coding (NR_046318, exon 2 of 2)	non-coding (NR_046318, exon 2 of 2)	-11623	NM_001292004	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
218456	chr8	48015021	48015280	+	0	NA	intron (NM_003350, intron 1 of 3)	AluJb|SINE|Alu	6719	NM_003350	7336		NM_003350	ENSG00000169139	UBE2V2	DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2	ubiquitin conjugating enzyme E2 V2	protein-coding
27747	chr10	35193971	35194230	+	0	NA	intron (NM_183011, intron 5 of 6)	AluSq2|SINE|Alu	-1027	NM_001267569	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
17634	chr1	157127601	157127800	+	0	NA	promoter-TSS (NR_001560)	promoter-TSS (NR_001560)	-662	NR_001560	360155		NR_001560	ENSG00000235700	CYCSP52	HC6|HCP2	CYCS pseudogene 52	pseudo
229552	chr9	122929301	122929700	+	0	NA	intron (NM_001304363, intron 1 of 1)	MIR|SINE|MIR	1765	NM_001304364	57684		NM_020924	ENSG00000171448	ZBTB26	ZNF481|bioref	zinc finger and BTB domain containing 26	protein-coding
129261	chr2	68382521	68382780	+	0	NA	intron (NM_002664, intron 4 of 8)	intron (NM_002664, intron 4 of 8)	17368	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
46093	chr11	122848901	122849380	+	0	NA	intron (NM_019604, intron 1 of 9)	intron (NM_019604, intron 1 of 9)	10640	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
135248	chr2	159714551	159714950	+	0	NA	intron (NM_001376234, intron 2 of 10)	AluJr|SINE|Alu	2244	NM_001376255	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
177268	chr4	109439201	109439900	+	0	NA	intron (NM_001318085, intron 1 of 23)	AluSq2|SINE|Alu	-5733	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
153803	chr22	29642801	29643250	+	0	NA	intron (NM_181833, intron 4 of 4)	intron (NM_181833, intron 4 of 4)	39392	NM_181829	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
184477	chr5	100828901	100829100	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-12435	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
110746	chr19	2337101	2337780	+	0	NA	intron (NM_152988, intron 2 of 14)	intron (NM_152988, intron 2 of 14)	8756	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
40391	chr11	64007601	64008730	+	0	NA	intron (NM_014067, intron 4 of 10)	intron (NM_014067, intron 4 of 10)	22312	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
103295	chr17	77856751	77857130	+	0	NA	Intergenic	Intergenic	27147	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
92314	chr17	8129951	8130730	+	0	NA	Intergenic	AluSx|SINE|Alu	-6234	NM_001165967	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
71934	chr15	22978901	22979500	+	0	NA	intron (NM_001287810, intron 1 of 31)	CpG	1168	NM_001324125	23191		NM_014608	ENSG00000273749	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
117462	chr19	19706471	19706830	+	0	NA	Intergenic	AluSq2|SINE|Alu	26462	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
100482	chr17	61495301	61495830	+	0	NA	Intergenic	Intergenic	39077	NM_018488	9496		NM_018488	ENSG00000121075	TBX4	ICPPS|PAPPAS|SPS	T-box transcription factor 4	protein-coding
147712	chr20	62364621	62365100	+	0	NA	intron (NM_005560, intron 1 of 79)	intron (NM_005560, intron 1 of 79)	2452	NM_005560	3911		NM_005560	ENSG00000130702	LAMA5	BBDS2|NPHS26	laminin subunit alpha 5	protein-coding
157054	chr22	42583801	42584230	+	0	NA	non-coding (NR_103820, exon 9 of 9)	non-coding (NR_103820, exon 9 of 9)	-2004	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
206559	chr7	35652021	35653650	+	0	NA	intron (NM_022373, intron 5 of 8)	L1MA4A|LINE|L1	42300	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
196438	chr6	43479001	43479200	+	0	NA	intron (NM_001350570, intron 3 of 10)	intron (NM_001350570, intron 3 of 10)	1530	NM_001350569	93643		NM_080604	ENSG00000137221	TJAP1	PILT|TJP4	tight junction associated protein 1	protein-coding
136557	chr2	177501201	177501450	+	0	NA	intron (NM_003659, intron 14 of 19)	intron (NM_003659, intron 14 of 19)	51471	NM_152517	150737		NM_152517	ENSG00000196659	IFT70B	IFT70|TTC30B|fleer	intraflagellar transport 70B	protein-coding
167190	chr3	128176301	128176500	+	0	NA	intron (NM_021937, intron 1 of 6)	intron (NM_021937, intron 1 of 6)	-22486	NM_001319086	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
98155	chr17	46031721	46032130	+	0	NA	intron (NM_015443, intron 14 of 14).2	intron (NM_015443, intron 14 of 14).2	32675	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
158128	chr22	50146171	50146330	+	0	NA	promoter-TSS (NM_001164106)	promoter-TSS (NM_001164106)	-805	NM_001164106	54456		NM_018995	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8|SPGF73	Mov10 like RNA helicase 1	protein-coding
221894	chr8	128575801	128576700	+	0	NA	Intergenic	Intergenic	-11571	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
213435	chr7	138481721	138481980	+	0	NA	intron (NM_015905, intron 1 of 18)	L1ME3B|LINE|L1	21591	NM_003852	8805		NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
134624	chr2	144412621	144412880	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-79681	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
74245	chr15	56916751	56917050	+	0	NA	intron (NR_015419, intron 2 of 3)	intron (NR_015419, intron 2 of 3)	-1190	NM_001322151	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
115907	chr19	16599551	16600200	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-27460	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
177296	chr4	109597451	109597780	+	0	NA	intron (NM_017918, intron 1 of 7)	SVA_D|Retroposon|SVA	37369	NM_017918	55013		NM_017918	ENSG00000005059	MCUB	CCDC109B	mitochondrial calcium uniporter dominant negative subunit beta	protein-coding
205028	chr7	6508371	6508780	+	0	NA	intron (NM_001145118, intron 12 of 21)	intron (NM_001145118, intron 12 of 21)	-24423	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
199813	chr6	127514421	127515100	+	0	NA	intron (NM_001012279, intron 3 of 11)	intron (NM_001012279, intron 3 of 11)	4264	NM_001012279	387104		NM_001012279	ENSG00000214338	MTCL3	C6orf174|SOGA3|dJ403A15.3	MTCL family member 3	protein-coding
4593	chr1	22078751	22079330	+	0	NA	intron (NM_044472, intron 2 of 5)	intron (NM_044472, intron 2 of 5)	26331	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
125186	chr2	10119601	10120930	+	0	NA	Intergenic	CpG	-2303	NM_001165931	6241		NM_001034	ENSG00000171848	RRM2	C2orf48|R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding
137076	chr2	190912871	190913030	+	0	NA	intron (NM_014905, intron 7 of 17)	intron (NM_014905, intron 7 of 17)	32129	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
32883	chr10	110149101	110149530	+	0	NA	intron (NR_164121, intron 2 of 2)	intron (NR_164121, intron 2 of 2)	2665	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
225680	chr9	36478301	36478780	+	0	NA	Intergenic	AluSp|SINE|Alu	-77342	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
36718	chr11	9017351	9017850	+	0	NA	Intergenic	L2a|LINE|L2	-13599	NM_020645	56675		NM_020645	ENSG00000175352	NRIP3	C11orf14|NY-SAR-105	nuclear receptor interacting protein 3	protein-coding
95175	chr17	35173001	35173200	+	0	NA	intron (NM_173167, intron 12 of 18)	MLT1D|LTR|ERVL-MaLR	21293	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
171487	chr3	196563821	196564680	+	0	NA	intron (NM_001345907, intron 1 of 2)	intron (NM_001345907, intron 1 of 2)	4304	NM_001345917	348793		NM_182627	ENSG00000185798	WDR53	-	WD repeat domain 53	protein-coding
61794	chr13	75325901	75327360	+	0	NA	intron (NM_014832, intron 9 of 20)	intron (NM_014832, intron 9 of 20)	86042	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
115657	chr19	16132171	16132330	+	0	NA	exon (NM_005370, exon 8 of 8)	exon (NM_005370, exon 8 of 8)	-1778	NR_111904	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
123826	chr19	55212351	55212680	+	0	NA	Intergenic	Intergenic	-3014	NM_001161440	5794		NM_002842	ENSG00000080031	PTPRH	R-PTP-H|SAP1	protein tyrosine phosphatase receptor type H	protein-coding
227390	chr9	89519251	89519980	+	0	NA	Intergenic	Intergenic	-21502	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
40856	chr11	65077921	65079100	+	0	NA	3' UTR (NM_080668, exon 6 of 6)	3' UTR (NM_080668, exon 6 of 6)	5530	NM_080668	113130		NM_080668	ENSG00000146670	CDCA5	SORORIN	cell division cycle associated 5	protein-coding
70557	chr14	102557351	102557450	+	0	NA	Intergenic	Intergenic	12146	NR_146561	105370681		NR_146561	ENSG00000259230	LINC02323	-	long intergenic non-protein coding RNA 2323	ncRNA
79648	chr16	1190251	1190350	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	34968	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
211529	chr7	105351871	105352930	+	0	NA	intron (NM_001350742, intron 2 of 16)	MLT1F1|LTR|ERVL-MaLR	36521	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
34593	chr10	133257471	133258600	+	0	NA	Intergenic	Intergenic	-10150	NR_108079	101927671		NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
178417	chr4	147741651	147742300	+	0	NA	intron (NM_024605, intron 1 of 22)	intron (NM_024605, intron 1 of 22)	9887	NM_024605	79658		NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
96961	chr17	42197251	42197550	+	0	NA	Intergenic	L1MB8|LINE|L1	-2906	NM_032484	84514		NM_032484	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
124973	chr2	8836671	8838080	+	0	NA	intron (NR_145965, intron 1 of 29)	CpG	238	NM_001348740	57498		NM_020738	ENSG00000134313	KIDINS220	ARMS|SINO|VENARG	kinase D interacting substrate 220	protein-coding
225569	chr9	35940421	35941080	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	17404	NM_019897	56656		NM_019897	ENSG00000278889	OR2S2	OR37A|OST715	olfactory receptor family 2 subfamily S member 2	protein-coding
182440	chr5	62303651	62304230	+	0	NA	Intergenic	Intergenic	-2222	NM_004520	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
197923	chr6	89527651	89527950	+	0	NA	intron (NM_014942, intron 1 of 15)	Tigger1|DNA|TcMar-Tigger	-34518	NM_001242811	22881		NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
114771	chr19	13747521	13748880	+	0	NA	intron (NM_001320569, intron 1 of 8)	intron (NM_001320569, intron 1 of 8)	305	NM_001320569	81576		NM_030818	ENSG00000104957	YJU2B	CCDC130	YJU2 splicing factor homolog B	protein-coding
21213	chr1	204085771	204086180	+	0	NA	intron (NM_005686, intron 1 of 13)	AluY|SINE|Alu	12860	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
67177	chr14	68815671	68817030	+	0	NA	Intergenic	CpG	-20107	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
55822	chr12	108850801	108851030	+	0	NA	intron (NM_001161330, intron 2 of 13)	intron (NM_001161330, intron 2 of 13)	6668	NM_018984	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
97938	chr17	45171621	45171880	+	0	NA	promoter-TSS (NR_135646)	promoter-TSS (NR_135646)	-265	NR_135646	105371795		NR_135646	ENSG00000267288	LOC105371795	-	uncharacterized LOC105371795	ncRNA
196867	chr6	49532051	49532480	+	0	NA	Intergenic	Intergenic	-18403	NR_146860	135398		NM_153344	ENSG00000197261	C6orf141	-	chromosome 6 open reading frame 141	protein-coding
14623	chr1	145453401	145454350	+	0	NA	Intergenic	Intergenic	-48097	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
165216	chr3	72924101	72924330	+	0	NA	intron (NR_138564, intron 3 of 6)	AluJo|SINE|Alu	36169	NM_001080393	727936		NM_001080393	ENSG00000172986	GXYLT2	GLT8D4	glucoside xylosyltransferase 2	protein-coding
178591	chr4	151563301	151563500	+	0	NA	intron (NM_001109977, intron 3 of 13)	intron (NM_001109977, intron 3 of 13)	154224	NM_001109977	729830		NM_001109977	ENSG00000164142	FHIP1A	FAM160A1|FHIP-L	FHF complex subunit HOOK interacting protein 1A	protein-coding
102670	chr17	76090001	76090200	+	0	NA	intron (NM_001375975, intron 6 of 18)	intron (NM_001375975, intron 6 of 18)	7976	NR_106928	102466753		NR_106928	ENSG00000275360	MIR6868	hsa-mir-6868	microRNA 6868	ncRNA
55993	chr12	110293321	110293580	+	0	NA	intron (NM_170665, intron 4 of 19)	AluSq2|SINE|Alu	12203	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
32721	chr10	104255501	104256000	+	0	NA	intron (NM_001191003, intron 2 of 5)	intron (NM_001191003, intron 2 of 5)	858	NM_004832	9446		NM_004832	ENSG00000148834	GSTO1	GSTO 1-1|GSTTLp28|HEL-S-21|P28|SPG-R	glutathione S-transferase omega 1	protein-coding
202176	chr6	155543671	155543830	+	0	NA	Intergenic	Intergenic	28906	NR_134596	105378068		NR_134596		LOC105378068	-	uncharacterized LOC105378068	ncRNA
134723	chr2	144521701	144522250	+	0	NA	intron (NR_110570, intron 1 of 2)	intron (NR_110570, intron 1 of 2)	107	NR_110570	101928455		NR_110570	ENSG00000232606	LINC01412	-	long intergenic non-protein coding RNA 1412	ncRNA
53514	chr12	66765221	66765480	+	0	NA	intron (NM_001379351, intron 1 of 22)	L3|LINE|CR1	38919	NM_001379347	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
57716	chr12	122870971	122871130	+	0	NA	exon (NM_024667, exon 2 of 4)	exon (NM_024667, exon 2 of 4)	25074	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
6052	chr1	27133271	27133430	+	0	NA	intron (NM_003047, intron 1 of 11)	AluSz|SINE|Alu	21775	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
77186	chr15	80291071	80291230	+	0	NA	intron (NR_033833, intron 1 of 2)	LTR12|LTR|ERV1	-38937	NM_001352888	100996492		NM_001352888	ENSG00000259417	CTXND1	LINC01314	cortexin domain containing 1	protein-coding
94363	chr17	28913171	28913330	+	0	NA	exon (NM_001290131, exon 9 of 11)	exon (NM_001290131, exon 9 of 11)	-10171	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
78062	chr15	90139621	90140230	+	0	NA	Intergenic	Intergenic	-37457	NM_002168	3418		NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDH-2|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2	protein-coding
164172	chr3	56791421	56791880	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	10299	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
65458	chr14	51749701	51749900	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	32517	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
17353	chr1	156497251	156497350	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	3475	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
80193	chr16	2139171	2139530	+	0	NA	Intergenic	AluJo|SINE|Alu	-3221	NR_037467	100500916		NR_037467	ENSG00000264397	MIR3180-5	mir-3180-5	microRNA 3180-5	ncRNA
97289	chr17	43167151	43168100	+	0	NA	intron (NR_110868, intron 1 of 1)	LTR2|LTR|ERV1	2778	NR_110868	101929767		NR_110868		LOC101929767	-	uncharacterized LOC101929767	ncRNA
86730	chr16	67594901	67595250	+	0	NA	intron (NM_001191022, intron 2 of 9)	intron (NM_001191022, intron 2 of 9)	24302	NM_001363916	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
72170	chr15	29128951	29129450	+	0	NA	intron (NM_015307, intron 7 of 10)	AluSx1|SINE|Alu	58542	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
25412	chr10	6557121	6557480	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	22976	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
184499	chr5	100875121	100875380	+	0	NA	intron (NM_005668, intron 3 of 4)	intron (NM_005668, intron 3 of 4)	28032	NM_005668	7903		NM_005668	ENSG00000113532	ST8SIA4	PST|PST1|SIAT8-D|SIAT8D|ST8SIA-IV|ST8SiaIV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
90372	chr17	1256671	1257530	+	0	NA	Intergenic	Intergenic	-13344	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
116803	chr19	18531571	18532030	+	0	NA	TTS (NM_001308373)	TTS (NM_001308373)	-9730	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
30271	chr10	75162421	75162880	+	0	NA	intron (NM_144660, intron 2 of 4)	AluSp|SINE|Alu	-47504	NM_001324087	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
86627	chr16	67430051	67432000	+	0	NA	promoter-TSS (NM_000196)	promoter-TSS (NM_000196)	-96	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
90901	chr17	2428771	2429330	+	0	NA	intron (NM_024086, intron 8 of 9)	AluSp|SINE|Alu	-13614	NR_028335	284009		NM_001025459		LOC284009	-	uncharacterized LOC284009	ncRNA
76015	chr15	71769051	71769150	+	0	NA	intron (NM_024817, intron 15 of 16)	SVA_F|Retroposon|SVA	-41454	NM_014249	10002		NM_014249	ENSG00000278570	NR2E3	ESCS|PNR|RNR|RP37|rd7	nuclear receptor subfamily 2 group E member 3	protein-coding
217894	chr8	37881851	37882650	+	0	NA	intron (NM_025151, intron 1 of 4)	MER41C|LTR|ERV1	17247	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
207068	chr7	39915071	39915430	+	0	NA	Intergenic	L1PBb|LINE|L1	34169	NR_158201	112267983		NR_158201	ENSG00000259826	CDK13-DT	-	CDK13 divergent transcript	ncRNA
143059	chr20	21508671	21509150	+	0	NA	Intergenic	CpG	5154	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
210088	chr7	97021951	97022250	+	0	NA	intron (NM_005221, intron 2 of 2)	CpG	2731	NM_005221	1749		NM_005221	ENSG00000105880	DLX5	SHFM1|SHFM1D	distal-less homeobox 5	protein-coding
40699	chr11	64781801	64782100	+	0	NA	Intergenic	AluJo|SINE|Alu	-3408	NM_001346364	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
233275	chr9	137303571	137304000	+	0	NA	Intergenic	Intergenic	-1514	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
42051	chr11	67457451	67457750	+	0	NA	exon (NM_001379183, exon 7 of 9)	exon (NM_001379183, exon 7 of 9)	2246	NM_001300895	57010		NM_145200	ENSG00000175544	CABP4	CRSD|CSNB2B	calcium binding protein 4	protein-coding
174644	chr4	40577171	40577330	+	0	NA	intron (NM_001371114, intron 1 of 5)	intron (NM_001371114, intron 1 of 5)	52614	NM_001098634	54502		NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
106215	chr18	11806751	11807050	+	0	NA	intron (NM_182978, intron 4 of 11)	AluSz|SINE|Alu	-44513	NM_020412	57132		NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding
34469	chr10	132455801	132456500	+	0	NA	Intergenic	Intergenic	10961	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
227529	chr9	91433271	91433530	+	0	NA	Intergenic	Intergenic	-8774	NM_001290000	4783		NM_005384	ENSG00000165030	NFIL3	E4BP4|IL3BP1|NF-IL3A|NFIL3A	nuclear factor, interleukin 3 regulated	protein-coding
191721	chr6	13687951	13689350	+	0	NA	intron (NM_005493, intron 2 of 13)	intron (NM_005493, intron 2 of 13)	23185	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
27969	chr10	42635251	42635550	+	0	NA	intron (NM_001305033, intron 1 of 3)	L1ME3B|LINE|L1	3170	NM_001305037	7582		NM_006955	ENSG00000196693	ZNF33B	KOX2|KOX31|ZNF11B	zinc finger protein 33B	protein-coding
44174	chr11	96241251	96241750	+	0	NA	intron (NM_032427, intron 1 of 4)	MER20|DNA|hAT-Charlie	-99938	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
62194	chr13	97672901	97673100	+	0	NA	Intergenic	L1HS|LINE|L1	238831	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
158037	chr22	49931971	49932800	+	0	NA	Intergenic	AluY|SINE|Alu	13751	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
188267	chr5	151092471	151092950	+	0	NA	Intergenic	Intergenic	-5025	NM_001252390	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
176855	chr4	102608871	102609030	+	0	NA	intron (NM_001382625, intron 20 of 24)	AluJr|SINE|Alu	-106464	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
36386	chr11	3992901	3993480	+	0	NA	intron (NM_001382568, intron 2 of 11)	L2a|LINE|L2	-101495	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
211390	chr7	105022921	105024030	+	0	NA	intron (NM_182931, intron 1 of 26)	AluYm1|SINE|Alu	9270	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
78973	chr15	101578601	101579050	+	0	NA	Intergenic	LTR67B|LTR|ERVL	35514	NR_147041	101927505		NR_147041	ENSG00000286733	LINC02348	-	long intergenic non-protein coding RNA 2348	ncRNA
164229	chr3	56942421	56942950	+	0	NA	intron (NR_046572, intron 2 of 2)	Tigger1|DNA|TcMar-Tigger	2645	NR_046572	100874200		NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
57388	chr12	121816251	121816350	+	0	NA	intron (NM_001353345, intron 7 of 16)	intron (NM_001353345, intron 7 of 16)	12291	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
82242	chr16	15054471	15054630	+	0	NA	intron (NM_173474, intron 1 of 9).2	intron (NM_173474, intron 1 of 9).2	1524	NM_173474	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
174743	chr4	44725601	44727000	+	0	NA	intron (NM_138335, intron 1 of 6)	CpG	256	NM_138335	132789		NM_138335	ENSG00000163281	GNPDA2	GNP2|SB52	glucosamine-6-phosphate deaminase 2	protein-coding
220892	chr8	104759671	104759950	+	0	NA	Intergenic	Intergenic	-170786	NM_013437	29967		NM_013437	ENSG00000147650	LRP12	ALS28|MIG13A|ST7	LDL receptor related protein 12	protein-coding
95416	chr17	36084071	36084830	+	0	NA	Intergenic	Intergenic	5248	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
180336	chr5	6635051	6635230	+	0	NA	intron (NM_001324322, intron 1 of 3)	intron (NM_001324322, intron 1 of 3)	1700	NM_001324322	6715		NM_001047	ENSG00000145545	SRD5A1	S5AR 1	steroid 5 alpha-reductase 1	protein-coding
20376	chr1	198088351	198088650	+	0	NA	Intergenic	Intergenic	-68498	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
35129	chr11	705751	707230	+	0	NA	intron (NM_022772, intron 1 of 20)	CpG	259	NM_022772	64787		NM_022772	ENSG00000177106	EPS8L2	DFNB106|EPS8R2	EPS8 signaling adaptor L2	protein-coding
133451	chr2	119677771	119679900	+	0	NA	promoter-TSS (NM_001105199)	promoter-TSS (NM_001105199)	-332	NM_001105198	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
31121	chr10	89389301	89390100	+	0	NA	Intergenic	Intergenic	-2846	NM_001270930	3434		NM_001548	ENSG00000185745	IFIT1	C56|G10P1|IFI-56|IFI-56K|IFI56|IFIT-1|IFNAI1|ISG56|P56|RNM561	interferon induced protein with tetratricopeptide repeats 1	protein-coding
208430	chr7	66781421	66781680	+	0	NA	intron (NM_001367750, intron 2 of 5)	L1PA7|LINE|L1	25668	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
94001	chr17	23016301	23016530	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	493304	NM_001190452	100462977		NM_001190452		MTRNR2L1	HN1	MT-RNR2 like 1 (pseudogene)	pseudo
99064	chr17	48941471	48941630	+	0	NA	intron (NM_001317193, intron 1 of 6)	intron (NM_001317193, intron 1 of 6)	3292	NR_133679	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
132168	chr2	101770701	101770900	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	72535	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
195963	chr6	41950721	41951330	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	-9177	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
6833	chr1	31023771	31024330	+	0	NA	intron (NM_014676, intron 3 of 21)	intron (NM_014676, intron 3 of 21)	41667	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
31828	chr10	99535151	99535830	+	0	NA	exon (NM_145285, exon 2 of 2)	exon (NM_145285, exon 2 of 2)	2548	NM_145285	159296		NM_145285	ENSG00000119919	NKX2-3	CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3	NK2 homeobox 3	protein-coding
145372	chr20	41167901	41168680	+	0	NA	promoter-TSS (NR_106931)	promoter-TSS (NR_106931)	-733	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
160843	chr3	33087571	33087730	+	0	NA	intron (NM_001317040, intron 1 of 16)	L1MB2|LINE|L1	9182	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
176961	chr4	103136771	103137150	+	0	NA	intron (NM_001286734, intron 37 of 46)	MIRb|SINE|MIR	-37126	NM_020139	56898		NM_020139	ENSG00000164039	BDH2	DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308	3-hydroxybutyrate dehydrogenase 2	protein-coding
159588	chr3	15068151	15068530	+	0	NA	Intergenic	AluJb|SINE|Alu	-3025	NM_022497	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
71770	chr15	21261651	21261750	+	0	NA	Intergenic	Intergenic	36129	NR_027053	646214		NR_027053		LOC646214	-	p21 (RAC1) activated kinase 2 pseudogene	pseudo
162070	chr3	46871401	46871900	+	0	NA	Intergenic	Intergenic	-6071	NM_000316	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
57512	chr12	122112071	122112430	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	33494	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
26281	chr10	14876701	14877350	+	0	NA	Intergenic	L2|LINE|L2	-1758	NR_034181	79723		NM_024670	ENSG00000152455	SUV39H2	KMT1B	SUV39H2 histone lysine methyltransferase	protein-coding
59005	chr13	20142121	20142730	+	0	NA	exon (NM_021954, exon 2 of 2)	exon (NM_021954, exon 2 of 2)	18627	NM_021954	2700		NM_021954	ENSG00000121743	GJA3	CTRCT14|CX46|CZP3	gap junction protein alpha 3	protein-coding
10290	chr1	64846121	64846680	+	0	NA	intron (NM_001321857, intron 14 of 24)	intron (NM_001321857, intron 14 of 24)	101325	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
206385	chr7	30738101	30739080	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-13545	NM_006774	11185		NM_006774	ENSG00000241644	INMT	TEMT	indolethylamine N-methyltransferase	protein-coding
231413	chr9	131096251	131096900	+	0	NA	promoter-TSS (NM_001185096)	promoter-TSS (NM_001185096)	44	NM_031426	83543		NM_031426	ENSG00000126878	AIF1L	C9orf58|IBA2	allograft inflammatory factor 1 like	protein-coding
189788	chr5	176743071	176743230	+	0	NA	promoter-TSS (NR_108030)	promoter-TSS (NR_108030)	-55	NR_108030	102577424		NR_108030	ENSG00000248859	LINC01574	HI-LNC12	long intergenic non-protein coding RNA 1574	ncRNA
127544	chr2	42338071	42338230	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	21888	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
102808	chr17	76418571	76418930	+	0	NA	intron (NM_022066, intron 1 of 17)	AluY|SINE|Alu	33472	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
164047	chr3	53374921	53375250	+	0	NA	Intergenic	Intergenic	-27542	NM_001290204	55802		NM_018403	ENSG00000272886	DCP1A	HSA275986|Nbla00360|SMAD4IP1|SMIF	decapping mRNA 1A	protein-coding
158210	chr22	50260201	50260500	+	0	NA	intron (NM_001303252, intron 2 of 10)	intron (NM_001303252, intron 2 of 10)	1333	NM_002969	6300		NM_002969	ENSG00000188130	MAPK12	ERK-6|ERK3|ERK6|MAPK 12|P38GAMMA|PRKM12|SAPK-3|SAPK3	mitogen-activated protein kinase 12	protein-coding
118290	chr19	35310401	35310600	+	0	NA	intron (NM_001199216, intron 8 of 10)	intron (NM_001199216, intron 8 of 10)	18339	NM_002361	4099		NM_002361	ENSG00000105695	MAG	GMA|S-MAG|SIGLEC-4A|SIGLEC4|SIGLEC4A|SPG75	myelin associated glycoprotein	protein-coding
18942	chr1	168514201	168515300	+	0	NA	Intergenic	Intergenic	-19106	NR_125956	101928565		NR_125956	ENSG00000228697	LOC101928565	-	uncharacterized LOC101928565	ncRNA
219119	chr8	65999321	65999580	+	0	NA	Intergenic	Intergenic	-15528	NM_001349432	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
108414	chr18	69938851	69939150	+	0	NA	intron (NM_001303619, intron 1 of 4)	AluSx|SINE|Alu	8873	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
132196	chr2	101987071	101987830	+	0	NA	Intergenic	MamRep4096|DNA|hAT-Tip100	3985	NR_103791	100506328		NR_103791		LINC01127	-	long intergenic non-protein coding RNA 1127	ncRNA
97547	chr17	44070251	44071780	+	0	NA	exon (NM_001319945, exon 1 of 5)	exon (NM_001319945, exon 1 of 5)	104	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
141281	chr2	240137971	240138330	+	0	NA	TTS (NM_148961)	TTS (NM_148961)	-1803	NM_138336	150678		NM_138336	ENSG00000172428	COPS9	CSNAP|MYEOV2	COP9 signalosome subunit 9	protein-coding
232690	chr9	136529751	136530400	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	-10449	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
66139	chr14	60242471	60242630	+	0	NA	Intergenic	Intergenic	-3200	NM_177952	5494		NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
1923	chr1	6473851	6474150	+	0	NA	intron (NM_001042665, intron 7 of 20)	intron (NM_001042665, intron 7 of 20)	-7805	NM_148966	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
10265	chr1	64538101	64538500	+	0	NA	intron (NM_001293274, intron 1 of 25)	intron (NM_001293274, intron 1 of 25)	32386	NM_001293274	57685		NM_020925	ENSG00000158966	CACHD1	-	cache domain containing 1	protein-coding
101484	chr17	67549871	67550030	+	0	NA	intron (NM_181671, intron 2 of 9)	intron (NM_181671, intron 2 of 9)	-78365	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
235408	chrX	45748471	45748630	+	0	NA	Intergenic	Intergenic	-1426	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA
151280	chr21	45480971	45481650	+	0	NA	intron (NM_001379500, intron 13 of 41)	intron (NM_001379500, intron 13 of 41)	3044	NR_106873	102465489		NR_106873	ENSG00000275167	MIR6815	hsa-mir-6815	microRNA 6815	ncRNA
121575	chr19	47272671	47273800	+	0	NA	Intergenic	CpG	-1188	NR_037675	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
75953	chr15	70451971	70452830	+	0	NA	Intergenic	Intergenic	53528	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
238483	chrX	153473171	153473530	+	0	NA	intron (NR_169631, intron 1 of 10)	intron (NR_169631, intron 1 of 10)	-2719	NM_017518	55559		NM_017518	ENSG00000213397	HAUS7	UCHL5IP|UIP1	HAUS augmin like complex subunit 7	protein-coding
148211	chr20	63570421	63570680	+	0	NA	exon (NM_001037335, exon 4 of 20)	exon (NM_001037335, exon 4 of 20)	-2796	NM_033405	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
37682	chr11	27503721	27504180	+	0	NA	intron (NM_018362, intron 1 of 4)	AluSx1|SINE|Alu	2819	NM_018362	55327		NM_018362	ENSG00000148943	LIN7C	LIN-7-C|LIN-7C|MALS-3|MALS3|VELI3	lin-7 homolog C, crumbs cell polarity complex component	protein-coding
166502	chr3	114317151	114317700	+	0	NA	promoter-TSS (NR_030293)	promoter-TSS (NR_030293)	-856	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
135139	chr2	157440701	157442000	+	0	NA	intron (NM_004288, intron 1 of 7)	intron (NM_004288, intron 1 of 7)	2739	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
228873	chr9	112378921	112381280	+	0	NA	promoter-TSS (NM_032303)	promoter-TSS (NM_032303)	-8	NM_032303	84263		NM_032303	ENSG00000119471	HSDL2	C9orf99|SDR13C1	hydroxysteroid dehydrogenase like 2	protein-coding
205137	chr7	7151921	7152180	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-30494	NM_020156	56913		NM_020156	ENSG00000106392	C1GALT1	C1GALT|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein-coding
65545	chr14	51927971	51928130	+	0	NA	intron (NM_053064, intron 2 of 3)	AluSx3|SINE|Alu	-9479	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
187418	chr5	141971401	141971600	+	0	NA	intron (NM_183401, intron 2 of 8)	AluJb|SINE|Alu	2395	NM_004290	9604		NM_004290	ENSG00000013561	RNF14	ARA54|HFB30|HRIHFB2038|TRIAD2	ring finger protein 14	protein-coding
229756	chr9	125184271	125184630	+	0	NA	intron (NM_001123369, intron 1 of 5)	AluJr4|SINE|Alu	5353	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
141000	chr2	238105551	238106050	+	0	NA	intron (NM_194312, intron 3 of 8)	L2|LINE|L2	5460	NM_194312	339768		NM_194312	ENSG00000144488	ESPNL	-	espin like	protein-coding
143353	chr20	25864421	25864830	+	0	NA	Intergenic	Intergenic	-10604	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
192374	chr6	24709451	24709750	+	0	NA	intron (NM_030939, intron 3 of 4)	intron (NM_030939, intron 3 of 4)	9554	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
144680	chr20	36434571	36435380	+	0	NA	intron (NM_001365621, intron 3 of 12)	intron (NM_001365621, intron 3 of 12)	-26493	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
86974	chr16	68152271	68152630	+	0	NA	intron (NM_173165, intron 3 of 9)	intron (NM_173165, intron 3 of 9)	67080	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
157830	chr22	47211551	47211650	+	0	NA	Intergenic	Intergenic	-133971	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
16929	chr1	155903421	155903680	+	0	NA	intron (NM_001256821, intron 5 of 5)	intron (NM_001256821, intron 5 of 5)	7368	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
67869	chr14	74250371	74250830	+	0	NA	intron (NM_182894, intron 3 of 4)	intron (NM_182894, intron 3 of 4)	11151	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
110542	chr19	2092551	2093750	+	0	NA	intron (NM_130807, intron 1 of 4)	intron (NM_130807, intron 1 of 4)	3176	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
175228	chr4	56913821	56914100	+	0	NA	intron (NM_001193508, intron 2 of 3)	AluJb|SINE|Alu	5047	NM_001193508	5978		NM_005612	ENSG00000084093	REST	DFNA27|GINGF5|HGF5|NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
207096	chr7	40003021	40003280	+	0	NA	intron (NM_003718, intron 5 of 13)	intron (NM_003718, intron 5 of 13)	52790	NM_031267	8621		NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13	cyclin dependent kinase 13	protein-coding
50597	chr12	48657151	48657450	+	0	NA	promoter-TSS (NR_002950)	promoter-TSS (NR_002950)	-518	NR_002950	677793		NR_002950	ENSG00000206612	SNORA2A	ACA2A	small nucleolar RNA, H/ACA box 2A	snoRNA
185395	chr5	128102501	128102700	+	0	NA	intron (NR_046207, intron 1 of 26)	(T)n|Simple_repeat|Simple_repeat	18834	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
13632	chr1	116433421	116434280	+	0	NA	intron (NR_125972, intron 2 of 3)	intron (NR_125972, intron 2 of 3)	-15228	NR_027646	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
163921	chr3	52682001	52682300	+	0	NA	5' UTR (NM_001350076, exon 2 of 32)	5' UTR (NM_001350076, exon 2 of 32)	3449	NM_001350074	55193		NM_018313	ENSG00000163939	PBRM1	BAF180|PB1|RCC|SMARCH1	polybromo 1	protein-coding
147516	chr20	59192571	59192930	+	0	NA	exon (NM_001384354, exon 4 of 8)	exon (NM_001384354, exon 4 of 8)	28929	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
232946	chr9	136941671	136941830	+	0	NA	intron (NM_018998, intron 6 of 8)	CpG-29168	2988	NM_018998	54461		NM_018998	ENSG00000159069	FBXW5	Fbw5	F-box and WD repeat domain containing 5	protein-coding
151334	chr21	45614951	45616450	+	0	NA	Intergenic	Intergenic	22046	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
144569	chr20	35767501	35768610	+	0	NA	Intergenic	Intergenic	-3960	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
187685	chr5	143327851	143328150	+	0	NA	intron (NR_157096, intron 1 of 7)	THE1D-int|LTR|ERVL-MaLR	75283	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
121462	chr19	47055371	47055930	+	0	NA	Intergenic	AluY|SINE|Alu	-7026	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
147831	chr20	62739701	62741750	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	31889	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
53226	chr12	62298551	62299080	+	0	NA	intron (NM_001351164, intron 2 of 21)	AluJb|SINE|Alu	38411	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
35097	chr11	634051	634630	+	0	NA	Intergenic	AluY|SINE|Alu	-2929	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
154681	chr22	36369201	36369800	+	0	NA	intron (NM_002473, intron 1 of 40)	intron (NM_002473, intron 1 of 40)	18467	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
105705	chr18	2686301	2686780	+	0	NA	intron (NM_015295, intron 5 of 47)	L1MEc|LINE|L1	30814	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
9124	chr1	45345901	45346100	+	0	NA	intron (NM_007170, intron 9 of 10)	intron (NM_007170, intron 9 of 10)	-5530	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
115422	chr19	15303001	15303430	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-22764	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
159949	chr3	17182271	17182630	+	0	NA	intron (NM_001349090, intron 19 of 21)	intron (NM_001349090, intron 19 of 21)	249254	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
151001	chr21	44407321	44407680	+	0	NA	intron (NM_001320350, intron 19 of 32)	L1MB7|LINE|L1	-18029	NM_001320352	7226		NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding
139703	chr2	227481771	227482200	+	0	NA	intron (NM_001135189, intron 1 of 11)	AluYe6|SINE|Alu	9829	NM_001135187	3267		NM_004504	ENSG00000173744	AGFG1	HRB|RAB|RIP	ArfGAP with FG repeats 1	protein-coding
122643	chr19	49838351	49838650	+	0	NA	TTS (NR_040037)	TTS (NR_040037)	6482	NR_106858	102465480		NR_106858	ENSG00000284114	MIR6800	hsa-mir-6800	microRNA 6800	ncRNA
94873	chr17	31523351	31523880	+	0	NA	intron (NM_001346748, intron 6 of 12)	intron (NM_001346748, intron 6 of 12)	-11268	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
140561	chr2	233296321	233297180	+	0	NA	Intergenic	AluJr|SINE|Alu	8074	NR_003006	677772		NR_003006	ENSG00000251791	SCARNA6	U88	small Cajal body-specific RNA 6	ncRNA
136500	chr2	177235851	177236100	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	20035	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
26806	chr10	23441671	23442030	+	0	NA	3' UTR (NM_001145373, exon 1 of 1)	3' UTR (NM_001145373, exon 1 of 1)	2775	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
213527	chr7	139082771	139082930	+	0	NA	intron (NM_020119, intron 3 of 12)	intron (NM_020119, intron 3 of 12)	26870	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
104696	chr17	81532021	81533050	+	0	NA	intron (NM_012418, intron 1 of 4)	intron (NM_012418, intron 1 of 4)	4158	NM_012418	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
31730	chr10	97709521	97709980	+	0	NA	Intergenic	Intergenic	-3980	NM_031484	83742		NM_031484	ENSG00000155254	MARVELD1	GB14|MARVD1|MRVLDC1|bA548K23.8	MARVEL domain containing 1	protein-coding
8862	chr1	43424001	43424300	+	0	NA	intron (NM_001365999, intron 15 of 71)	intron (NM_001365999, intron 15 of 71)	-24389	NR_106793	102465440		NR_106793	ENSG00000274975	MIR6735	hsa-mir-6735	microRNA 6735	ncRNA
204190	chr7	2490201	2490600	+	0	NA	Intergenic	MIR3|SINE|MIR	-14017	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
150689	chr21	43697871	43698230	+	0	NA	Intergenic	L1M4b|LINE|L1	-21079	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
22061	chr1	211326401	211328280	+	0	NA	intron (NM_001319207, intron 1 of 10)	intron (NM_001319207, intron 1 of 10)	507	NM_001033910	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
147337	chr20	58209051	58209150	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	19553	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
13415	chr1	113982571	113982930	+	0	NA	TTS (NM_001286352)	TTS (NM_001286352)	3276	NM_020190	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
173489	chr4	9216951	9217050	+	0	NA	TTS (NM_001256854)	TTS (NM_001256854)	1595	NM_001256859	100287364		NM_001256859	ENSG00000250844	USP17L18	-	ubiquitin specific peptidase 17 like family member 18	protein-coding
196848	chr6	47477271	47478880	+	0	NA	5' UTR (NM_012120, exon 1 of 18)	5' UTR (NM_012120, exon 1 of 18)	286	NM_012120	23607		NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
202238	chr6	156851851	156852350	+	0	NA	intron (NM_017519, intron 2 of 18)	intron (NM_017519, intron 2 of 18)	-72369	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
19694	chr1	181042251	181042430	+	0	NA	intron (NM_001310213, intron 3 of 6)	AluSp|SINE|Alu	8357	NM_001385162	3140		NM_001531	ENSG00000153029	MR1	HLALS	major histocompatibility complex, class I-related	protein-coding
49546	chr12	26729171	26729330	+	0	NA	intron (NM_002223, intron 2 of 56)	L1PA13|LINE|L1	103944	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
79847	chr16	1451901	1452580	+	0	NA	intron (NM_001114331, intron 14 of 23)	L1MB5|LINE|L1	-7751	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
84916	chr16	31224801	31225000	+	0	NA	3' UTR (NM_001008274, exon 7 of 7)	3' UTR (NM_001008274, exon 7 of 7)	-7765	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
112466	chr19	6389571	6389800	+	0	NA	promoter-TSS (NR_106945)	promoter-TSS (NR_106945)	18	NR_106945	102465533		NR_106945	ENSG00000274390	MIR6885	hsa-mir-6885	microRNA 6885	ncRNA
38933	chr11	47469771	47469930	+	0	NA	3' UTR (NM_001376435, exon 14 of 14)	3' UTR (NM_001376435, exon 14 of 14)	-20714	NM_032645	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
47959	chr12	6864701	6865680	+	0	NA	non-coding (NR_168449, exon 19 of 20)	non-coding (NR_168449, exon 19 of 20)	-2230	NM_001159287	7167		NM_000365	ENSG00000111669	TPI1	HEL-S-49|TIM|TPI|TPID	triosephosphate isomerase 1	protein-coding
150560	chr21	43097201	43097400	+	0	NA	intron (NM_001025203, intron 3 of 7).2	AluSx|SINE|Alu	10270	NM_006758	7307		NM_006758	ENSG00000160201	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
142716	chr20	8662871	8663430	+	0	NA	intron (NM_015192, intron 9 of 31)	(AT)n|Simple_repeat|Simple_repeat	-168035	NR_004386	26767		NR_004386	ENSG00000201348	RNU105B	105B|E1-2	RNA, U105B small nucleolar	snoRNA
172127	chr4	1178751	1178850	+	0	NA	intron (NM_001199021, intron 2 of 7)	LTR67B|LTR|ERVL	-5589	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
220725	chr8	102095121	102096000	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	28774	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
109561	chr19	886201	886880	+	0	NA	intron (NM_005481, intron 4 of 15)	MER58B|DNA|hAT-Charlie	6647	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
219060	chr8	65802121	65802380	+	0	NA	intron (NM_001242318, intron 1 of 12)	L1MB4|LINE|L1	-13193	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
39524	chr11	61083301	61084130	+	0	NA	Intergenic	MIRc|SINE|MIR	-10248	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
188139	chr5	150402021	150402800	+	0	NA	intron (NM_001025158, intron 5 of 5)	intron (NM_001025158, intron 5 of 5)	10346	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
5378	chr1	25433551	25433930	+	0	NA	intron (NM_001282564, intron 1 of 8)	MIRc|SINE|MIR	2843	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
166935	chr3	125136571	125136730	+	0	NA	intron (NM_024628, intron 5 of 13)	intron (NM_024628, intron 5 of 13)	14902	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
209252	chr7	75886721	75887450	+	0	NA	intron (NM_001346186, intron 5 of 5)	intron (NM_001346186, intron 5 of 5)	8051	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
96802	chr17	41900501	41900700	+	0	NA	intron (NM_001096, intron 11 of 28)	AluJr|SINE|Alu	18351	NM_001096	47		NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
7311	chr1	32580521	32580780	+	0	NA	intron (NR_111980, intron 2 of 3)	L1MC|LINE|L1	41223	NM_001291496	653121		NM_144621	ENSG00000160062	ZBTB8A	BOZF1|ZBTB8|ZNF916A	zinc finger and BTB domain containing 8A	protein-coding
138395	chr2	204325401	204325700	+	0	NA	Intergenic	Intergenic	-219925	NM_205863	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
123595	chr19	54474751	54475050	+	0	NA	Intergenic	L1MB5|LINE|L1	-1604	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
29619	chr10	71766771	71767780	+	0	NA	intron (NM_022153, intron 1 of 6)	intron (NM_022153, intron 1 of 6)	6245	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
230975	chr9	129464821	129465680	+	0	NA	Intergenic	Intergenic	-23410	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
122744	chr19	50097071	50097380	+	0	NA	TTS (NR_024214).3	TTS (NR_024214).3	721	NR_024223	100169952		NR_024223		SNAR-A5	-	small NF90 (ILF3) associated RNA A5	snRNA
139604	chr2	225017351	225017450	+	0	NA	intron (NM_014689, intron 1 of 55)	GA-rich|Low_complexity|Low_complexity	-6860	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
150717	chr21	43735471	43736100	+	0	NA	intron (NM_003681, intron 2 of 10)	intron (NM_003681, intron 2 of 10)	-5701	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
110797	chr19	2456401	2457680	+	0	NA	promoter-TSS (NM_032737)	promoter-TSS (NM_032737)	-81	NM_032737	84823		NM_032737	ENSG00000176619	LMNB2	EPM9|LAMB2|LMN2|MCPH27	lamin B2	protein-coding
58489	chr12	132157901	132158100	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	13543	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
226259	chr9	67723701	67725480	+	0	NA	TTS (NR_027422)	TTS (NR_027422)	2153	NR_027422	100133121		NR_027422		FAM27B	FAM27A2	family with sequence similarity 27 member B	ncRNA
207404	chr7	44254321	44254580	+	0	NA	intron (NM_172080, intron 5 of 19)	intron (NM_172080, intron 5 of 19)	53472	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
211738	chr7	107171501	107172130	+	0	NA	intron (NM_012257, intron 1 of 10)	AluSx|SINE|Alu	2812	NM_012257	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
66337	chr14	61436001	61436630	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	114872	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
33643	chr10	119686051	119687250	+	0	NA	Intergenic	Intergenic	35270	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
104940	chr17	81935251	81935800	+	0	NA	intron (NM_153824, intron 2 of 7)	intron (NM_153824, intron 2 of 7)	1775	NM_153824	5831		NM_006907	ENSG00000183010	PYCR1	ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR	pyrroline-5-carboxylate reductase 1	protein-coding
80016	chr16	1927121	1927480	+	0	NA	Intergenic	Intergenic	-8885	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
81718	chr16	11261401	11262200	+	0	NA	Intergenic	AluJb|SINE|Alu	-5618	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
70231	chr14	100717501	100717700	+	0	NA	Intergenic	LTR33|LTR|ERVL	-9292	NM_001317172	8788		NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta like non-canonical Notch ligand 1	protein-coding
177029	chr4	107037371	107037530	+	0	NA	Intergenic	Intergenic	-1137	NM_014421	27123		NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
106493	chr18	14637851	14638250	+	0	NA	Intergenic	L1M1|LINE|L1	-94450	NR_134878	388468		NM_001137671	ENSG00000183206	POTEC	A26B2|CT104.6|POTE-18|POTE18	POTE ankyrin domain family member C	protein-coding
67671	chr14	73126721	73126980	+	0	NA	Intergenic	AluSg|SINE|Alu	-9657	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
139954	chr2	230865731	230866680	+	0	NA	intron (NM_001012514, intron 1 of 4)	intron (NM_001012514, intron 1 of 4)	1255	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
159976	chr3	17806201	17806550	+	0	NA	Intergenic	Intergenic	63431	NR_135536	105376975		NR_135536	ENSG00000286352	LOC105376975	-	uncharacterized LOC105376975	ncRNA
207172	chr7	43605151	43606580	+	0	NA	intron (NM_004760, intron 2 of 6)	intron (NM_004760, intron 2 of 6)	22757	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
180517	chr5	14403821	14404080	+	0	NA	intron (NR_134469, intron 31 of 56)	(TGG)n|Simple_repeat|Simple_repeat	-60033	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
189294	chr5	172114711	172116350	+	0	NA	intron (NM_005990, intron 4 of 18)	intron (NM_005990, intron 4 of 18)	72694	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
85686	chr16	56424431	56426250	+	0	NA	promoter-TSS (NM_001323511)	promoter-TSS (NM_001323511)	205	NM_001323512	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
67520	chr14	70989571	70989730	+	0	NA	intron (NM_014982, intron 7 of 35)	AluSz6|SINE|Alu	82191	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
102977	chr17	76721671	76722430	+	0	NA	intron (NM_015167, intron 3 of 5)	intron (NM_015167, intron 3 of 5)	-3991	NM_001378349	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
232979	chr9	136976701	136976900	+	0	NA	promoter-TSS (NM_000954)	promoter-TSS (NM_000954)	-704	NM_000954	5730		NM_000954	ENSG00000107317	PTGDS	L-PGDS|LPGDS|PDS|PGD2|PGDS|PGDS2	prostaglandin D2 synthase	protein-coding
216233	chr8	12191021	12191280	+	0	NA	intron (NR_003494, intron 2 of 5)	Charlie4z|DNA|hAT-Charlie	2979	NR_003494	85002		NM_001083537	ENSG00000186523	FAM86B1	-	family with sequence similarity 86 member B1	protein-coding
72527	chr15	34241321	34242030	+	0	NA	intron (NM_133647, intron 16 of 24)	intron (NM_133647, intron 16 of 24)	16659	NM_001351373	51234		NM_016454	ENSG00000128463	EMC4	PIG17|TMEM85	ER membrane protein complex subunit 4	protein-coding
17018	chr1	156051271	156052000	+	0	NA	intron (NM_020131, intron 2 of 10)	intron (NM_020131, intron 2 of 10)	2163	NM_001304342	56893		NM_020131	ENSG00000160803	UBQLN4	A1U|A1Up|C1orf6|CIP75|UBIN	ubiquilin 4	protein-coding
42826	chr11	72832901	72833100	+	0	NA	Intergenic	Intergenic	18589	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
177323	chr4	109729421	109731080	+	0	NA	promoter-TSS (NM_030821)	promoter-TSS (NM_030821)	-180	NM_030821	81579		NM_030821	ENSG00000123739	PLA2G12A	GXII|PLA2G12|ROSSY	phospholipase A2 group XIIA	protein-coding
83080	chr16	22381201	22382200	+	0	NA	Intergenic	Intergenic	-4069	NR_136333	105371130		NR_136333	ENSG00000293459	MFSD13B	-	major facilitator superfamily domain containing 13B (pseudogene)	pseudo
160221	chr3	23943571	23944600	+	0	NA	intron (NM_001377380, intron 1 of 4)	L2|LINE|L2	-1201	NM_005126	9975		NM_005126	ENSG00000174738	NR1D2	BD73|EAR-1R|REVERBB|REVERBbeta|RVR	nuclear receptor subfamily 1 group D member 2	protein-coding
205269	chr7	8178271	8178630	+	0	NA	intron (NR_146926, intron 6 of 13)	L2c|LINE|L2	83717	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
177247	chr4	108651551	108651730	+	0	NA	intron (NM_021227, intron 1 of 3)	intron (NM_021227, intron 1 of 3)	1041	NM_001267818	58505		NM_021227	ENSG00000198856	OSTC	DC2	oligosaccharyltransferase complex non-catalytic subunit	protein-coding
135267	chr2	159756801	159757000	+	0	NA	intron (NM_001376253, intron 5 of 7)	AluSz6|SINE|Alu	22936	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
142133	chr20	2741051	2742050	+	0	NA	intron (NR_138537, intron 7 of 17)	intron (NR_138537, intron 7 of 17)	48672	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
71250	chr14	105197151	105197850	+	0	NA	Intergenic	Intergenic	-16177	NM_001318380	256281		NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding
99998	chr17	57833051	57834100	+	0	NA	Intergenic	Intergenic	16469	NM_016070	51649		NM_016070	ENSG00000181610	MRPS23	CGI-138|COXPD46|HSPC329|MRP-S23|mS23	mitochondrial ribosomal protein S23	protein-coding
35327	chr11	1041751	1042380	+	0	NA	Intergenic	Intergenic	-5347	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
28424	chr10	48303051	48303580	+	0	NA	Intergenic	Intergenic	-3324	NM_001278547	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
213845	chr7	141785771	141786130	+	0	NA	Intergenic	Intergenic	-4267	NM_018980	54429		NM_018980	ENSG00000127366	TAS2R5	T2R5	taste 2 receptor member 5	protein-coding
215106	chr7	155298601	155299880	+	0	NA	intron (NM_198337, intron 2 of 3)	intron (NM_198337, intron 2 of 3)	1362	NM_005542	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
60282	chr13	40623371	40623530	+	0	NA	intron (NM_002015, intron 1 of 2)	A-rich|Low_complexity|Low_complexity	43191	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
132072	chr2	101270221	101270880	+	0	NA	TTS (NM_017546)	TTS (NM_017546)	2499	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
53703	chr12	68541871	68542130	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-68899	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
213370	chr7	135905371	135905730	+	0	NA	Intergenic	Intergenic	71809	NM_145808	136319		NM_145808	ENSG00000105887	MTPN	GCDP|V-1	myotrophin	protein-coding
115600	chr19	16041471	16041900	+	0	NA	non-coding (NR_024335, exon 5 of 5)	non-coding (NR_024335, exon 5 of 5)	7565	NR_110321	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
46116	chr11	122976751	122977880	+	0	NA	TTS (NM_001098169)	TTS (NM_001098169)	4519	NM_001098169	390259		NM_001098169	ENSG00000188909	BSX	BSX1	brain specific homeobox	protein-coding
235064	chrX	40156921	40157380	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	20127	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
225987	chr9	41269121	41269650	+	0	NA	Intergenic	Intergenic	-35550	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
169424	chr3	161273451	161274050	+	0	NA	Intergenic	Intergenic	52439	NM_015938	51068		NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
180760	chr5	32151901	32152100	+	0	NA	intron (NM_022130, intron 1 of 3)	L1MB3|LINE|L1	22319	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
30751	chr10	84197001	84197200	+	0	NA	intron (NM_033100, intron 3 of 16)	intron (NM_033100, intron 3 of 16)	2563	NM_033100	92211		NM_033100	ENSG00000148600	CDHR1	CORD15|PCDH21|PRCAD|RP65	cadherin related family member 1	protein-coding
104668	chr17	81491301	81492080	+	0	NA	Intergenic	Intergenic	21109	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
152685	chr22	21620651	21621400	+	0	NA	intron (NR_028436, intron 4 of 4)	AluJb|SINE|Alu	8997	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
172292	chr4	1568151	1568800	+	0	NA	Intergenic	MIR3|SINE|MIR	115516	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
32844	chr10	110051721	110051980	+	0	NA	intron (NM_016824, intron 1 of 14)	AluJo|SINE|Alu	-43469	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
231295	chr9	130040391	130041430	+	0	NA	intron (NM_001363755, intron 1 of 15)	L1MC5|LINE|L1	2279	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
93441	chr17	18643321	18643580	+	0	NA	intron (NM_001039397, intron 1 of 9)	intron (NM_001039397, intron 1 of 9)	977	NM_001039397	254272		NM_001039397	ENSG00000189375	TBC1D28	-	TBC1 domain family member 28	protein-coding
66906	chr14	65286501	65286700	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	48583	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
6255	chr1	27563101	27564230	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	39829	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
115950	chr19	16758901	16759100	+	0	NA	intron (NM_001290355, intron 7 of 20)	AluSg|SINE|Alu	27808	NM_001347994	284434		NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
180491	chr5	14204851	14205230	+	0	NA	intron (NR_134469, intron 1 of 56)	intron (NR_134469, intron 1 of 56)	61698	NR_134469	7204		NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|MRD63|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
152418	chr22	20577271	20577430	+	0	NA	intron (NM_001003891, intron 9 of 17)	intron (NM_001003891, intron 9 of 17)	69303	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
112498	chr19	6462121	6462680	+	0	NA	Intergenic	Intergenic	-1377	NM_174882	92359		NM_139161	ENSG00000130545	CRB3	-	crumbs cell polarity complex component 3	protein-coding
222729	chr8	141390571	141390730	+	0	NA	Intergenic	Intergenic	-1371	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
158804	chr3	9703151	9703250	+	0	NA	promoter-TSS (NM_001308388)	promoter-TSS (NM_001308388)	-633	NM_001308388	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
182830	chr5	69217271	69218700	+	0	NA	intron (NM_033281, intron 1 of 3)	CpG	225	NM_033281	92259		NM_033281	ENSG00000134056	KGD4	DC47|MRP-S36|MRPS36	alpha-ketoglutarate dehydrogenase subunit 4	protein-coding
25635	chr10	8131451	8131950	+	0	NA	Intergenic	Intergenic	77012	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
146172	chr20	48738671	48740430	+	0	NA	intron (NM_020820, intron 3 of 39)	L2a|LINE|L2	88449	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
173390	chr4	7967471	7968230	+	0	NA	intron (NM_001286688, intron 14 of 14)	intron (NM_001286688, intron 14 of 14)	-27924	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
225502	chr9	35662851	35662950	+	0	NA	intron (NM_032818, intron 6 of 8)	intron (NM_032818, intron 6 of 8)	2295	NM_032818	84904		NM_032818	ENSG00000137135	ARHGEF39	C9orf100	Rho guanine nucleotide exchange factor 39	protein-coding
138672	chr2	213001171	213001900	+	0	NA	3' UTR (NM_001079526, exon 9 of 9)	3' UTR (NM_001079526, exon 9 of 9)	-75199	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
49758	chr12	31751571	31752000	+	0	NA	Intergenic	AluSz|SINE|Alu	-22611	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
121224	chr19	46628451	46628750	+	0	NA	Intergenic	AluJb|SINE|Alu	-3511	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
69649	chr14	97878701	97879100	+	0	NA	Intergenic	Intergenic	99224	NR_015430	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
93240	chr17	17862521	17862780	+	0	NA	intron (NM_001082968, intron 11 of 14)	intron (NM_001082968, intron 11 of 14)	-25639	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
115264	chr19	14540771	14541130	+	0	NA	intron (NM_138501, intron 1 of 12)	AluSq|SINE|Alu	11356	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
212272	chr7	123536821	123537280	+	0	NA	TTS (NM_001291304)	TTS (NM_001291304)	-2386	NR_104245	154865		NM_178827	ENSG00000164675	IQUB	TRS4	IQ motif and ubiquitin domain containing	protein-coding
203547	chr7	882471	883150	+	0	NA	intron (NM_015949, intron 1 of 8)	intron (NM_015949, intron 1 of 8)	6256	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
133549	chr2	120442021	120442280	+	0	NA	Intergenic	CpG	24199	NR_027181	84931		NM_032845	ENSG00000280409	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
128349	chr2	54899871	54900200	+	0	NA	intron (NM_001039753, intron 21 of 40)	intron (NM_001039753, intron 21 of 40)	110237	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
158085	chr22	49984921	49985180	+	0	NA	Intergenic	AluSx|SINE|Alu	22184	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
46776	chr11	129985951	129986050	+	0	NA	intron (NM_199437, intron 1 of 20)	intron (NM_199437, intron 1 of 20)	-16624	NR_024233	440072		NM_001007543		PRDM10-DT	C11orf37|LINC00167|NCRNA00167	PRDM10 divergent transcript	ncRNA
154408	chr22	35326901	35327300	+	0	NA	intron (NR_156428, intron 5 of 13)	intron (NR_156428, intron 5 of 13)	-8540	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
57632	chr12	122508501	122508880	+	0	NA	intron (NR_036434, intron 8 of 10)	AluSp|SINE|Alu	-7758	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
56907	chr12	120367921	120368250	+	0	NA	exon (NM_002442, exon 4 of 15)	exon (NM_002442, exon 4 of 15)	1079	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
193697	chr6	31124901	31125100	+	0	NA	intron (NM_014068, intron 1 of 5).5	intron (NM_014068, intron 1 of 5).5	-4554	NM_001264	1041		NM_001264	ENSG00000204539	CDSN	HTSS|HTSS1|HYPT2|PSS|PSS1	corneodesmosin	protein-coding
16375	chr1	154374021	154374280	+	0	NA	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	-31193	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
223296	chr8	143771521	143772500	+	0	NA	intron (NM_001381874, intron 5 of 13)	CpG-27740	-11502	NR_136279	105375800		NR_136279		LOC105375800	-	SREBF pathway regulator in golgi 1 pseudogene	pseudo
105711	chr18	2694521	2694780	+	0	NA	exon (NM_015295, exon 8 of 48)	exon (NM_015295, exon 8 of 48)	38924	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
17226	chr1	156284951	156285330	+	0	NA	intron (NM_032323, intron 1 of 3)	intron (NM_032323, intron 1 of 3)	815	NM_032323	84283		NM_032323	ENSG00000163472	TMEM79	MATT	transmembrane protein 79	protein-coding
16423	chr1	154548301	154548500	+	0	NA	TTS (NM_182499)	TTS (NM_182499)	-5209	NR_046668	100874097		NR_046668	ENSG00000229780	UBE2Q1-AS1	-	UBE2Q1 antisense RNA 1	ncRNA
25134	chr10	4100471	4100630	+	0	NA	Intergenic	Intergenic	48824	NR_120632								
151015	chr21	44460951	44461250	+	0	NA	3' UTR (NM_030891, exon 2 of 2)	3' UTR (NM_030891, exon 2 of 2)	5590	NM_030891	81543		NM_030891	ENSG00000160233	LRRC3	C21orf102|C21orf30|LRRC3DN	leucine rich repeat containing 3	protein-coding
111095	chr19	3193121	3194180	+	0	NA	intron (NM_020170, intron 3 of 14)	MER5A|DNA|hAT-Charlie	7720	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
73393	chr15	42591571	42591730	+	0	NA	intron (NM_020759, intron 3 of 32)	intron (NM_020759, intron 3 of 32)	16044	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
79725	chr16	1323651	1324080	+	0	NA	intron (NM_194259, intron 7 of 7)	intron (NM_194259, intron 7 of 7)	-9780	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
180203	chr5	1503171	1504200	+	0	NA	intron (NM_024830, intron 1 of 13)	intron (NM_024830, intron 1 of 13)	7171	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
235681	chrX	48648071	48648550	+	0	NA	Intergenic	(AAAAAT)n|Simple_repeat|Simple_repeat	-35489	NM_000377	7454		NM_000377	ENSG00000015285	WAS	IMD2|SCNX|THC|THC1|WASP|WASPA	WASP actin nucleation promoting factor	protein-coding
201772	chr6	149956901	149957400	+	0	NA	Intergenic	AluSx|SINE|Alu	-6793	NM_001317089	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
131568	chr2	96814151	96814450	+	0	NA	promoter-TSS (NR_149141)	promoter-TSS (NR_149141)	-643	NR_149141	100506036		NR_149141	ENSG00000273265	CNNM3-DT	-	CNNM3 divergent transcript	ncRNA
71451	chr14	105710371	105710530	+	0	NA	Intergenic	Intergenic	-37643	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
22753	chr1	224378771	224379280	+	0	NA	non-coding (NR_102347, exon 4 of 4)	non-coding (NR_102347, exon 4 of 4)	19286	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
75459	chr15	65857771	65858150	+	0	NA	Intergenic	Kanga1|DNA|TcMar-Tc2	-11531	NM_004663	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
194245	chr6	32471751	32472050	+	0	NA	Intergenic	Intergenic	32013	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
88859	chr16	87683151	87683450	+	0	NA	intron (NM_020655, intron 2 of 4)	intron (NM_020655, intron 2 of 4)	80792	NM_020655	57338		NM_020655	ENSG00000154118	JPH3	CAGL237|HDL2|JP-3|JP3|TNRC22	junctophilin 3	protein-coding
32914	chr10	110208971	110210500	+	0	NA	promoter-TSS (NM_001008541)	promoter-TSS (NM_001008541)	-496	NM_001008541	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
221027	chr8	116691921	116692180	+	0	NA	intron (NM_003756, intron 2 of 7)	intron (NM_003756, intron 2 of 7)	39950	NR_136278	105375713		NR_136278	ENSG00000289382	LOC105375713	-	uncharacterized LOC105375713	ncRNA
30609	chr10	80195001	80195200	+	0	NA	intron (NM_001278408, intron 1 of 16)	intron (NM_001278408, intron 1 of 16)	9391	NM_001278408	311		NM_001157	ENSG00000122359	ANXA11	ALS23|ANX11|CAP-50|CAP50|IBMWMA	annexin A11	protein-coding
215067	chr7	152897951	152898050	+	0	NA	Intergenic	(AACCCT)n|Simple_repeat|Simple_repeat	138248	NM_020445	57180		NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	actin related protein 3B	protein-coding
168124	chr3	138834101	138835600	+	0	NA	promoter-TSS (NM_006219)	promoter-TSS (NM_006219)	78	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
48340	chr12	9245051	9245150	+	0	NA	intron (NR_137432, intron 2 of 4)	MLT1J2|LTR|ERVL-MaLR	5097	NR_137430	100499405		NR_036466	ENSG00000237248	LINC00987	-	long intergenic non-protein coding RNA 987	ncRNA
120179	chr19	42260571	42260730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5522	NM_001312656	2077		NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding
148205	chr20	63564321	63564780	+	0	NA	exon (NM_001037335, exon 9 of 20)	exon (NM_001037335, exon 9 of 20)	3204	NM_033405	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
114920	chr19	13958121	13958580	+	0	NA	intron (NM_138353, intron 6 of 12)	intron (NM_138353, intron 6 of 12)	-4958	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
167058	chr3	126923501	126923700	+	0	NA	intron (NM_032343, intron 6 of 7)	intron (NM_032343, intron 6 of 7)	-64994	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
136033	chr2	172465471	172466080	+	0	NA	intron (NM_001316306, intron 2 of 25)	intron (NM_001316306, intron 2 of 25)	247	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
237391	chrX	119500901	119501230	+	0	NA	Intergenic	Intergenic	-31945	NR_028443	100303728		NR_028443	ENSG00000224281	SLC25A5-AS1	-	SLC25A5 antisense RNA 1	ncRNA
96262	chr17	39852251	39853000	+	0	NA	intron (NM_183231, intron 1 of 5)	L2a|LINE|L2	11563	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
13388	chr1	113938771	113939480	+	0	NA	intron (NM_001369806, intron 1 of 15)	MIR|SINE|MIR	9281	NM_001369807	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
97799	chr17	44773571	44773830	+	0	NA	intron (NM_001318933, intron 11 of 26)	intron (NM_001318933, intron 11 of 26)	14712	NM_002390	4185		NM_002390	ENSG00000073670	ADAM11	MDC	ADAM metallopeptidase domain 11	protein-coding
7949	chr1	37555571	37555930	+	0	NA	Intergenic	LTR29|LTR|ERV1	-1190	NM_003462	7802		NM_003462	ENSG00000163879	DNALI1	P28|SPGF83|dJ423B22.5|hp28	dynein axonemal light intermediate chain 1	protein-coding
106080	chr18	9123351	9123880	+	0	NA	intron (NM_021074, intron 5 of 7)	AluJo|SINE|Alu	13105	NR_110771	101927275		NR_110771	ENSG00000266053	NDUFV2-AS1	-	NDUFV2 antisense RNA 1	ncRNA
133988	chr2	130827971	130828280	+	0	NA	Intergenic	Intergenic	-8789	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
216581	chr8	21989851	21989950	+	0	NA	intron (NM_001362802, intron 15 of 26)	AluY|SINE|Alu	-34234	NM_001286680	10361		NM_182795	ENSG00000158806	NPM2	-	nucleophosmin/nucleoplasmin 2	protein-coding
130693	chr2	86554771	86554930	+	0	NA	intron (NM_001198954, intron 3 of 7)	AluSx1|SINE|Alu	8593	NM_001193517	51652		NM_016079	ENSG00000115561	CHMP3	CGI-149|NEDF|VPS24	charged multivesicular body protein 3	protein-coding
87310	chr16	70184551	70184850	+	0	NA	intron (NM_173619, intron 10 of 12)	intron (NM_173619, intron 10 of 12)	-3622	NR_135173	105371328		NR_135173		LOC105371328	-	uncharacterized LOC105371328	ncRNA
36361	chr11	3941471	3941700	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	85523	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
84846	chr16	31129851	31130550	+	0	NA	intron (NM_032188, intron 7 of 10)	intron (NM_032188, intron 7 of 10)	5527	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
15824	chr1	151324421	151324680	+	0	NA	intron (NM_001198774, intron 1 of 10)	intron (NM_001198774, intron 1 of 10)	2866	NM_001198774	5298		NM_002651	ENSG00000143393	PI4KB	DFNA87|NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIII|PI4KIIIBETA|PIK4CB	phosphatidylinositol 4-kinase beta	protein-coding
45007	chr11	117000101	117000500	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	98128	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
85879	chr16	57050821	57051080	+	0	NA	intron (NM_001384955, intron 23 of 47)	AluSx|SINE|Alu	-41633	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
79917	chr16	1719671	1720430	+	0	NA	intron (NM_001318852, intron 1 of 31)	AluSq2|SINE|Alu	13855	NM_001040439	23162		NM_015133	ENSG00000138834	MAPK8IP3	JIP-3|JIP3|JSAP1|NEDBA|SYD2|syd	mitogen-activated protein kinase 8 interacting protein 3	protein-coding
81871	chr16	11667821	11668800	+	0	NA	promoter-TSS (NM_003498)	promoter-TSS (NM_003498)	-145	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
56336	chr12	112936201	112936730	+	0	NA	Intergenic	Intergenic	-2009	NM_006187	4940		NM_006187	ENSG00000111331	OAS3	p100|p100OAS	2'-5'-oligoadenylate synthetase 3	protein-coding
30063	chr10	73863701	73864100	+	0	NA	intron (NR_160045, intron 1 of 17)	intron (NR_160045, intron 1 of 17)	10655	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
126628	chr2	28807201	28808080	+	0	NA	Intergenic	L1ME4c|LINE|L1	-3194	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
7377	chr1	32881871	32882600	+	0	NA	Intergenic	Intergenic	-4256	NM_002143	3208		NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
70430	chr14	102035921	102036380	+	0	NA	intron (NM_001376, intron 56 of 77)	intron (NM_001376, intron 56 of 77)	50894	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
131596	chr2	96868271	96869400	+	0	NA	intron (NM_017789, intron 1 of 14)	CpG	1245	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
139260	chr2	219443171	219443500	+	0	NA	intron (NM_005876, intron 1 of 40)	intron (NM_005876, intron 1 of 40)	8492	NM_005876	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
81178	chr16	4465601	4467350	+	0	NA	intron (NM_001351995, intron 3 of 5)	intron (NM_001351995, intron 3 of 5)	8150	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
221249	chr8	122678951	122679130	+	0	NA	intron (NR_126348, intron 2 of 3)	intron (NR_126348, intron 2 of 3)	15066	NR_126348	104266958		NR_126348		LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA
136339	chr2	175251471	175251630	+	0	NA	Intergenic	Intergenic	-69840	NM_001002258	518		NM_001689	ENSG00000154518	ATP5MC3	ATP5G3|DYTSPG|P3	ATP synthase membrane subunit c locus 3	protein-coding
206337	chr7	30320501	30320900	+	0	NA	intron (NM_147128, intron 1 of 4)	Tigger5b|DNA|TcMar-Tigger	-30810	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
159872	chr3	16818201	16818400	+	0	NA	Intergenic	L1MC3|LINE|L1	-66655	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
122175	chr19	48902871	48903030	+	0	NA	intron (NM_006184, intron 2 of 12)	(AT)n|Simple_repeat|Simple_repeat	2638	NM_006184	4924		NM_006184	ENSG00000104805	NUCB1	CALNUC|NUC	nucleobindin 1	protein-coding
228324	chr9	98263571	98264100	+	0	NA	Intergenic	Intergenic	-8186	NM_001267571	55357		NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
233524	chrX	13301	13630	+	0	NA	Intergenic	Intergenic	-262891	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
78479	chr15	92905701	92907280	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	2091	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
13512	chr1	114750901	114751100	+	0	NA	intron (NM_001242891, intron 1 of 20)	L2|LINE|L2	6984	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
192823	chr6	27096771	27097250	+	0	NA	Intergenic	CpG	35785	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
55563	chr12	106135901	106136750	+	0	NA	intron (NM_014840, intron 1 of 6)	intron (NM_014840, intron 1 of 6)	3708	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
168999	chr3	152428271	152428930	+	0	NA	intron (NM_207295, intron 3 of 8)	intron (NM_207295, intron 3 of 8)	-87610	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
217138	chr8	25455471	25456250	+	0	NA	intron (NM_017634, intron 1 of 11)	intron (NM_017634, intron 1 of 11)	2573	NM_017634	54793		NM_017634	ENSG00000104756	KCTD9	BTBD27	potassium channel tetramerization domain containing 9	protein-coding
186195	chr5	134219471	134221230	+	0	NA	intron (NM_002715, intron 1 of 6)	AluSz|SINE|Alu	5204	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
119957	chr19	41881751	41882080	+	0	NA	TTS (NM_001783)	TTS (NM_001783)	-1269	NM_198977	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
19408	chr1	174168051	174168350	+	0	NA	intron (NM_001366447, intron 1 of 20)	AluSz6|SINE|Alu	8680	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
27463	chr10	32006151	32006680	+	0	NA	Intergenic	AluSp|SINE|Alu	50010	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
50749	chr12	48998701	49000980	+	0	NA	promoter-TSS (NM_015086)	promoter-TSS (NM_015086)	-465	NM_015086	23109		NM_015086	ENSG00000181418	DDN	-	dendrin	protein-coding
26266	chr10	14731501	14731900	+	0	NA	intron (NM_001282695, intron 1 of 5)	Tigger3a|DNA|TcMar-Tigger	43197	NM_001282695	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
19160	chr1	171644951	171645480	+	0	NA	intron (NM_000261, intron 1 of 2)	LTR41B|LTR|ERVL	7473	NM_000261	4653		NM_000261	ENSG00000034971	MYOC	GLC1A|GPOA|JOAG|JOAG1|TIGR	myocilin	protein-coding
187637	chr5	143005401	143005800	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-136690	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
128043	chr2	47518651	47518750	+	0	NA	3' UTR (NM_022055, exon 2 of 2)	3' UTR (NM_022055, exon 2 of 2)	-8837	NR_120602	644093		NR_120602	ENSG00000235760	MSH2-OT1	HCG2040054	MSH2 overlapping transcript 1	ncRNA
144706	chr20	36490751	36490850	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	29005	NM_183006	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
96591	chr17	40521201	40521400	+	0	NA	Intergenic	Intergenic	-19677	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
34963	chr11	492621	493400	+	0	NA	Intergenic	Intergenic	13758	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
106201	chr18	11620401	11620600	+	0	NA	Intergenic	MIRb|SINE|MIR	10942	NM_001282300	646000		NM_001282300	ENSG00000236396	SLC35G4	AMAC1L1|SLC35G4P	solute carrier family 35 member G4	protein-coding
117409	chr19	19623321	19625100	+	0	NA	3' UTR (NM_004720, exon 3 of 3)	3' UTR (NM_004720, exon 3 of 3)	4010	NM_004720	9170		NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
130794	chr2	86859001	86859200	+	0	NA	intron (NM_172213, intron 1 of 5)	intron (NM_172213, intron 1 of 5)	-2725	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
61284	chr13	50132521	50133580	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	-7509	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
203825	chr7	1416151	1416700	+	0	NA	Intergenic	Intergenic	43045	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
80228	chr16	2188771	2189280	+	0	NA	intron (NM_020764, intron 6 of 19)	intron (NM_020764, intron 6 of 19)	7580	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
146404	chr20	49320751	49321050	+	0	NA	Intergenic	Intergenic	40217	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
119607	chr19	40761301	40762130	+	0	NA	intron (NM_004596, intron 3 of 5)	AluSz|SINE|Alu	10512	NM_004596	6626		NM_004596	ENSG00000077312	SNRPA	Mud1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding
223268	chr8	143718371	143719250	+	0	NA	exon (NM_139021, exon 5 of 14)	exon (NM_139021, exon 5 of 14)	2461	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
205185	chr7	7652471	7652900	+	0	NA	intron (NM_002947, intron 4 of 7)	L2a|LINE|L2	11933	NM_001302348	729852		NM_001302348	ENSG00000219545	UMAD1	RPA3-AS1|RPA3OS	UBAP1-MVB12-associated (UMA) domain containing 1	protein-coding
19195	chr1	172375401	172375600	+	0	NA	intron (NM_015569, intron 17 of 20)	intron (NM_015569, intron 17 of 20)	-45185	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
37338	chr11	14861771	14862350	+	0	NA	intron (NM_001363569, intron 14 of 15)	MER50|LTR|ERV1	29611	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
12347	chr1	101136751	101137750	+	0	NA	Intergenic	Intergenic	99278	NR_104626	101928370		NR_104626		S1PR1-DT	LISPR1	S1PR1 divergent transcript	ncRNA
191858	chr6	15261021	15261950	+	0	NA	intron (NM_001267040, intron 1 of 17)	AluSc|SINE|Alu	12630	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
189439	chr5	172955451	172955750	+	0	NA	non-coding (NR_026682, exon 4 of 4)	non-coding (NR_026682, exon 4 of 4)	-3129	NM_001317981	51121		NM_016093	ENSG00000037241	RPL26L1	RPL26P1	ribosomal protein L26 like 1	protein-coding
229980	chr9	126804501	126805490	+	0	NA	promoter-TSS (NM_001135776)	promoter-TSS (NM_001135776)	-11	NM_001135776	23099		NM_014007	ENSG00000169155	ZBTB43	ZBTB22B|ZNF-X|ZNF297B	zinc finger and BTB domain containing 43	protein-coding
198746	chr6	108564071	108564500	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	3368	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
79652	chr16	1193151	1193530	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	31928	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
183903	chr5	87381771	87382180	+	0	NA	intron (NM_022650, intron 20 of 24)	AluSz6|SINE|Alu	30929	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
147385	chr20	58649401	58651590	+	0	NA	promoter-TSS (NM_001134772)	promoter-TSS (NM_001134772)	-758	NR_037945	100534593		NR_037945	ENSG00000254995	STX16-NPEPL1	-	STX16-NPEPL1 readthrough (NMD candidate)	ncRNA
73023	chr15	40770501	40771180	+	0	NA	exon (NM_001130448, exon 1 of 1)	exon (NM_001130448, exon 1 of 1)	860	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
17703	chr1	158320071	158320230	+	0	NA	Intergenic	L1PA3|LINE|L1	11381	NM_001764	910		NM_001764	ENSG00000158485	CD1B	CD1|CD1A|R1	CD1b molecule	protein-coding
29768	chr10	72256301	72256600	+	0	NA	Intergenic	Intergenic	-17474	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
63227	chr13	113881351	113882380	+	0	NA	intron (NR_047035, intron 1 of 2)	intron (NR_047035, intron 1 of 2)	1621	NR_047035	100874178		NR_047035	ENSG00000226921	LINC00454	-	long intergenic non-protein coding RNA 454	ncRNA
239183	chrY	12558951	12559250	+	0	NA	Intergenic	L1PB|LINE|L1	-103267	NR_001545	64595		NR_001545	ENSG00000114374	TTTY15	NCRNA00138	testis expressed transcript, Y-linked 15	ncRNA
5890	chr1	26797771	26798130	+	0	NA	non-coding (NR_164652, exon 4 of 4)	non-coding (NR_164652, exon 4 of 4)	9762	NM_001374482	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
120146	chr19	42222421	42222680	+	0	NA	intron (NM_001314033, intron 1 of 2)	intron (NM_001314033, intron 1 of 2)	2238	NM_001314033	116115		NM_133444	ENSG00000167625	ZNF526	DENNED	zinc finger protein 526	protein-coding
12149	chr1	100134801	100135030	+	0	NA	intron (NM_019083, intron 1 of 10)	intron (NM_019083, intron 1 of 10)	1765	NR_135078	54482		NM_019083	ENSG00000122435	TRMT13	CCDC76	tRNA methyltransferase 13 homolog	protein-coding
91374	chr17	4554951	4556480	+	0	NA	promoter-TSS (NM_001105538)	promoter-TSS (NM_001105538)	-329	NM_001105538	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
67209	chr14	68935021	68935280	+	0	NA	intron (NM_001130004, intron 1 of 21)	AluSp|SINE|Alu	44152	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
220640	chr8	100958121	100958380	+	0	NA	Intergenic	AluY|SINE|Alu	-4868	NM_003406	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
211489	chr7	105159301	105159500	+	0	NA	intron (NM_182691, intron 6 of 14)	AluSx1|SINE|Alu	109677	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
81669	chr16	11076101	11076830	+	0	NA	intron (NM_001243403, intron 18 of 20)	intron (NM_001243403, intron 18 of 20)	131901	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
60596	chr13	41993371	41993530	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	32281	NR_039974	100507240		NR_039974	ENSG00000278338	VWA8-AS1	-	VWA8 antisense RNA 1 (head to head)	ncRNA
85661	chr16	56262101	56263130	+	0	NA	intron (NM_020988, intron 2 of 8)	intron (NM_020988, intron 2 of 8)	17095	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
183653	chr5	80258171	80258630	+	0	NA	Intergenic	AluSg|SINE|Alu	-2352	NR_126060	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
184380	chr5	98773051	98774880	+	0	NA	promoter-TSS (NR_033932)	promoter-TSS (NR_033932)	302	NM_001366508	285704		NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule BMP co-receptor b	protein-coding
169262	chr3	157176851	157176950	+	0	NA	Intergenic	Intergenic	-16753	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
196910	chr6	52373851	52374150	+	0	NA	intron (NM_133367, intron 1 of 1)	MSTA|LTR|ERVL-MaLR	11849	NM_133367	85315		NM_133367	ENSG00000170915	PAQR8	C6orf33|LMPB1|MPRB	progestin and adipoQ receptor family member 8	protein-coding
18812	chr1	167644471	167644880	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	14443	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
171527	chr3	196693851	196694900	+	0	NA	Intergenic	Intergenic	17875	NM_001379468	84984		NM_032898	ENSG00000174007	CEP19	C3orf34|MOSPGF	centrosomal protein 19	protein-coding
218419	chr8	47612671	47613330	+	0	NA	intron (NM_001352944, intron 7 of 13)	intron (NM_001352944, intron 7 of 13)	-41088	NM_001352959	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
109114	chr18	80104601	80104800	+	0	NA	Intergenic	Intergenic	-4562	NM_014913	22850		NM_014913	ENSG00000101544	ADNP2	ZNF508	ADNP homeobox 2	protein-coding
145695	chr20	45015071	45015730	+	0	NA	intron (NM_006282, intron 9 of 10)	intron (NM_006282, intron 9 of 10)	48888	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
78600	chr15	93109671	93110030	+	0	NA	Intergenic	Intergenic	-20639	NM_020211	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
29539	chr10	70985901	70986100	+	0	NA	Intergenic	Intergenic	46947	NR_134314	105378349		NR_134313	ENSG00000259267	LINC02622	-	long intergenic non-protein coding RNA 2622	ncRNA
7325	chr1	32655001	32655400	+	0	NA	intron (NM_005610, intron 2 of 11)	AluJo|SINE|Alu	3842	NM_001135256	5928		NM_005610	ENSG00000162521	RBBP4	NURF55|RBAP48|lin-53	RB binding protein 4, chromatin remodeling factor	protein-coding
119365	chr19	40142651	40142950	+	0	NA	Intergenic	L1MC5a|LINE|L1	-48626	NM_002446	4294		NM_002446	ENSG00000130758	MAP3K10	MEKK10|MLK2|MST	mitogen-activated protein kinase kinase kinase 10	protein-coding
174258	chr4	38062051	38062950	+	0	NA	intron (NM_015173, intron 12 of 19)	intron (NM_015173, intron 12 of 19)	-47681	NM_001253913	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
42763	chr11	72738471	72739250	+	0	NA	intron (NM_001040118, intron 1 of 34)	intron (NM_001040118, intron 1 of 34)	13529	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
173738	chr4	16083851	16084300	+	0	NA	promoter-TSS (NM_001145847)	promoter-TSS (NM_001145847)	-52	NM_006017	8842		NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding
230318	chr9	127966501	127967710	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	13884	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
175002	chr4	51844201	51845650	+	0	NA	intron (NM_001287755, intron 1 of 10)	CpG	1346	NM_001287755	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
238090	chrX	136522171	136522330	+	0	NA	Intergenic	Intergenic	-9965	NM_016267	51442		NM_016267	ENSG00000102243	VGLL1	TDU|VGL1	vestigial like family member 1	protein-coding
8108	chr1	39193351	39194980	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	109998	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
607	chr1	1304621	1306150	+	0	NA	promoter-TSS (NR_145806)	promoter-TSS (NR_145806)	-573	NR_145806	109623456		NR_145806		SNORD167	-	small nucleolar RNA, C/D box 167	snoRNA
146096	chr20	47621021	47621480	+	0	NA	intron (NM_181659, intron 2 of 22)	(T)n|Simple_repeat|Simple_repeat	119363	NM_001174088	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
65442	chr14	51566901	51567250	+	0	NA	intron (NR_047477, intron 2 of 3)	MER102b|DNA|hAT-Charlie	32877	NR_047477	100874185		NR_047477	ENSG00000258537	FRMD6-AS2	-	FRMD6 antisense RNA 2	ncRNA
206516	chr7	34175051	34175230	+	0	NA	Intergenic	L1PA2|LINE|L1	269601	NM_001365308	168667		NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding
220996	chr8	115648101	115649100	+	0	NA	intron (NM_001282903, intron 1 of 6)	intron (NM_001282903, intron 1 of 6)	19413	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
114452	chr19	12712021	12712350	+	0	NA	intron (NM_001382240, intron 10 of 25)	LTR13|LTR|ERVK	-5667	NR_002751	26810		NR_002751	ENSG00000209702	SNORD41	RNU41|U41	small nucleolar RNA, C/D box 41	snoRNA
53018	chr12	57546201	57547680	+	0	NA	promoter-TSS (NM_001348065)	promoter-TSS (NM_001348065)	-81	NM_001348065	10540		NM_006400	ENSG00000175203	DCTN2	DCTN50|DYNAMITIN|HEL-S-77|RBP50	dynactin subunit 2	protein-coding
184234	chr5	96617771	96618330	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-43987	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
154064	chr22	30637671	30638280	+	0	NA	intron (NM_001318371, intron 1 of 2)	MIRb|SINE|MIR	2160	NM_001318370	339665		NM_001001479	ENSG00000100036	SLC35E4	-	solute carrier family 35 member E4	protein-coding
44222	chr11	96337851	96338450	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-3288	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
104818	chr17	81809551	81809650	+	0	NA	intron (NM_000160, intron 2 of 13)	intron (NM_000160, intron 2 of 13)	5450	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
133576	chr2	121552551	121552650	+	0	NA	intron (NM_001142274, intron 2 of 37)	L1PA14|LINE|L1	21720	NR_023343	100151683		NR_023343	ENSG00000264229	RNU4ATAC	LWS|MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear	snRNA
128376	chr2	55023401	55023600	+	0	NA	intron (NM_153828, intron 1 of 6)	L2|LINE|L2	-13228	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
166987	chr3	125821951	125822500	+	0	NA	Intergenic	Intergenic	-31673	NR_031687	100302204		NR_031687	ENSG00000221737	MIR548I1	MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1	microRNA 548i-1	ncRNA
10805	chr1	77760771	77761150	+	0	NA	Intergenic	AluJo|SINE|Alu	-1108	NM_015017	23032		NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
10491	chr1	66374351	66375650	+	0	NA	TTS (NM_001297442)	TTS (NM_001297442)	20465	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
206831	chr7	37318551	37319230	+	0	NA	intron (NM_014800, intron 2 of 21)	intron (NM_014800, intron 2 of 21)	34778	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
192241	chr6	20092001	20092230	+	0	NA	Intergenic	Intergenic	120354	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
140114	chr2	231511951	231512680	+	0	NA	intron (NR_024079, intron 2 of 2)	MER1A|DNA|hAT-Charlie	2024	NR_024079	151477		NM_173513	ENSG00000181798	LINC00471	C2orf52	long intergenic non-protein coding RNA 471	ncRNA
183754	chr5	81533871	81534430	+	0	NA	intron (NM_001256733, intron 4 of 15)	L1MCa|LINE|L1	-140016	NM_130767	134526		NM_130767	ENSG00000172497	ACOT12	CACH-1|Cach|STARD15|THEAL	acyl-CoA thioesterase 12	protein-coding
91	chr1	354771	354930	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	96828	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
22273	chr1	212702721	212703350	+	0	NA	Intergenic	L1ME4c|LINE|L1	-3195	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
124171	chr19	56117151	56117450	+	0	NA	intron (NM_001351682, intron 1 of 1)	intron (NM_001351682, intron 1 of 1)	3995	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
90523	chr17	1473671	1474880	+	0	NA	intron (NM_001080779, intron 17 of 31)	AluSx1|SINE|Alu	11126	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
198779	chr6	108865901	108866300	+	0	NA	intron (NM_032131, intron 3 of 17)	intron (NM_032131, intron 3 of 17)	17678	NM_032131	84071		NM_032131	ENSG00000118690	ARMC2	SPGF38|bA787I22.1	armadillo repeat containing 2	protein-coding
185672	chr5	131632921	131633350	+	0	NA	intron (NM_016340, intron 1 of 27)	AluSg7|SINE|Alu	2094	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
1778	chr1	6039471	6039630	+	0	NA	intron (NM_001199860, intron 1 of 15)	MLT1F2|LTR|ERVL-MaLR	4862	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
149522	chr21	32929571	32930130	+	0	NA	Intergenic	Intergenic	-29038	NR_135522	102724502		NR_135522	ENSG00000228961	LINC01690	-	long intergenic non-protein coding RNA 1690	ncRNA
6436	chr1	28231421	28231830	+	0	NA	intron (NR_159454, intron 1 of 9)	AluSq|SINE|Alu	1404	NM_014280	22826		NM_014280	ENSG00000126698	DNAJC8	HSPC331|SPF31	DnaJ heat shock protein family (Hsp40) member C8	protein-coding
58983	chr13	19956851	19957900	+	0	NA	promoter-TSS (NM_001353157)	promoter-TSS (NM_001353157)	-48	NM_001353164	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
77378	chr15	82837121	82837380	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	27622	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
596	chr1	1295701	1296230	+	0	NA	TTS (NR_106784)	TTS (NR_106784)	205	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
153554	chr22	26611251	26611350	+	0	NA	intron (NM_001887, intron 3 of 5)	MIR|SINE|MIR	6727	NM_001887	1414		NM_001887	ENSG00000100122	CRYBB1	CATCN3|CTRCT17	crystallin beta B1	protein-coding
146068	chr20	47499321	47500080	+	0	NA	Intergenic	AluJr|SINE|Alu	-2187	NM_181659	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
26480	chr10	17673501	17674200	+	0	NA	intron (NM_001324284, intron 3 of 14)	intron (NM_001324284, intron 3 of 14)	29699	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
25515	chr10	7269201	7270580	+	0	NA	intron (NM_001029880, intron 7 of 20)	intron (NM_001029880, intron 7 of 20)	-83106	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
140636	chr2	233470051	233470350	+	0	NA	3' UTR (NM_152879, exon 30 of 30)	3' UTR (NM_152879, exon 30 of 30)	19698	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
216306	chr8	12663421	12663700	+	0	NA	intron (NR_047662, intron 1 of 8)	intron (NR_047662, intron 1 of 8)	2051	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
203792	chr7	1246801	1247330	+	0	NA	Intergenic	CpG	14193	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
220968	chr8	115185271	115185650	+	0	NA	Intergenic	Intergenic	482553	NM_001282902	7227		NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding
107899	chr18	56902721	56902980	+	0	NA	intron (NM_052834, intron 20 of 26)	intron (NM_052834, intron 20 of 26)	169269	NR_048536	100885779		NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR|lincRNA-ST8SIA3	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
22086	chr1	211470071	211470530	+	0	NA	Intergenic	Intergenic	21862	NM_001164688	343035		NM_183059	ENSG00000198570	RD3	C1orf36|LCA12	RD3 regulator of GUCY2D	protein-coding
237897	chrX	131746601	131747080	+	0	NA	intron (NR_152876, intron 8 of 9)	intron (NR_152876, intron 8 of 9)	83803	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
27070	chr10	27223801	27224280	+	0	NA	intron (NM_001301253, intron 3 of 11)	intron (NM_001301253, intron 3 of 11)	16446	NM_001301252	91452		NM_145698	ENSG00000107897	ACBD5	RDLKD	acyl-CoA binding domain containing 5	protein-coding
71110	chr14	104895551	104896030	+	0	NA	3' UTR (NM_015005, exon 18 of 18)	3' UTR (NM_015005, exon 18 of 18)	-29089	NM_138790	122618		NM_138790	ENSG00000166428	PLD4	C14orf175	phospholipase D family member 4	protein-coding
141533	chr2	241299801	241300550	+	0	NA	intron (NM_005336, intron 1 of 27)	intron (NM_005336, intron 1 of 27)	-15012	NM_006155	4735		NM_004404	ENSG00000168385	SEPTIN2	DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|Septin-2|hNedd5	septin 2	protein-coding
168670	chr3	150545571	150547250	+	0	NA	promoter-TSS (NM_032025)	promoter-TSS (NM_032025)	86	NM_014445	27230		NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding
51780	chr12	53344601	53345900	+	0	NA	promoter-TSS (NM_001300837)	promoter-TSS (NM_001300837)	-457	NM_001300837	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
232842	chr9	136765871	136766030	+	0	NA	Intergenic	MER51B|LTR|ERV1	-1432	NM_203347	389812		NM_203347	ENSG00000177984	LCN15	PRO6093|UNQ2541	lipocalin 15	protein-coding
82035	chr16	12087951	12088480	+	0	NA	intron (NM_032167, intron 11 of 20)	intron (NM_032167, intron 11 of 20)	111481	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
46256	chr11	124750151	124750650	+	0	NA	intron (NM_014312, intron 3 of 6)	intron (NM_014312, intron 3 of 6)	1855	NM_001329920	23584		NM_014312	ENSG00000019102	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
130288	chr2	84894771	84895680	+	0	NA	Intergenic	Intergenic	-10431	NM_021103	9168		NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding
113075	chr19	8254851	8255150	+	0	NA	intron (NM_024552, intron 4 of 11)	intron (NM_024552, intron 4 of 11)	45630	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
100522	chr17	62470621	62471280	+	0	NA	Intergenic	Intergenic	-6861	NM_001375271	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
47453	chr12	3755771	3755930	+	0	NA	Intergenic	Intergenic	-2741	NM_001144958	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
38439	chr11	45180171	45181230	+	0	NA	promoter-TSS (NM_001384651)	promoter-TSS (NM_001384651)	-336	NM_001384651	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
191677	chr6	13466351	13466650	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	5563	NR_038459	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
62660	chr13	102405771	102405950	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-3417	NM_001321945	2259		NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|NYS4|SCA27|SCA27A|SCA27B	fibroblast growth factor 14	protein-coding
115786	chr19	16365051	16365150	+	0	NA	intron (NR_047665, intron 21 of 22)	intron (NR_047665, intron 21 of 22)	40274	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
165259	chr3	74614451	74614550	+	0	NA	Intergenic	CpG	-93360	NM_020872	5067		NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3	protein-coding
221276	chr8	122804771	122805280	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	23370	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
49278	chr12	19624671	19624830	+	0	NA	Intergenic	Intergenic	184151	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
237436	chrX	119676221	119676950	+	0	NA	intron (NM_145799, intron 1 of 10)	AluJr|SINE|Alu	16583	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
177874	chr4	128673371	128673530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-136250	NM_199320	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
81003	chr16	4113051	4113550	+	0	NA	intron (NM_001116, intron 2 of 10)	MIRc|SINE|MIR	3142	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
105442	chr17	82958851	82959150	+	0	NA	intron (NR_135465, intron 8 of 13)	(TG)n|Simple_repeat|Simple_repeat	47988	NR_135466	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
30470	chr10	79179521	79179780	+	0	NA	intron (NM_020338, intron 4 of 24)	intron (NM_020338, intron 4 of 24)	110684	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
3373	chr1	15682571	15682900	+	0	NA	Intergenic	Intergenic	-1585	NM_015164	23207		NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology and RUN domain containing M2	protein-coding
57415	chr12	121837171	121837550	+	0	NA	Intergenic	AluSx1|SINE|Alu	21499	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
92082	chr17	7550671	7550830	+	0	NA	intron (NM_172089, intron 3 of 10)	intron (NM_172089, intron 3 of 10)	1692	NR_037146	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
77667	chr15	85580421	85581860	+	0	NA	exon (NM_006738, exon 7 of 37)	exon (NM_006738, exon 7 of 37)	-38810	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
44714	chr11	111603201	111603880	+	0	NA	intron (NM_015191, intron 1 of 14)	intron (NM_015191, intron 1 of 14)	1091	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
109636	chr19	994721	995330	+	0	NA	TTS (NM_024100)	TTS (NM_024100)	-5394	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
83559	chr16	28095201	28095400	+	0	NA	Intergenic	Intergenic	-31586	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
209130	chr7	75073021	75074450	+	0	NA	promoter-TSS (NM_001363447)	promoter-TSS (NM_001363447)	67	NM_030798	81554		NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
123407	chr19	53982421	53983350	+	0	NA	TTS (NR_030632)	TTS (NR_030632)	578	NR_030632	100126325		NR_030632	ENSG00000284583	MIR935	MIRN935|hsa-mir-935|mir-935	microRNA 935	ncRNA
62695	chr13	102779371	102780350	+	0	NA	Intergenic	MER31A|LTR|ERV1	-6074	NM_001286775	93081		NM_138779	ENSG00000151287	TEX30	C13orf27	testis expressed 30	protein-coding
44675	chr11	110524121	110524780	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	94502	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
225935	chr9	40970371	40970600	+	0	NA	Intergenic	Intergenic	-21776	NR_156730	100132352		NR_034006		FRG1HP	-	FSHD region gene 1 family member H, pseudogene	pseudo
171370	chr3	196079371	196079530	+	0	NA	intron (NM_001313966, intron 1 of 16)	AluSp|SINE|Alu	2640	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
152637	chr22	21509151	21509650	+	0	NA	intron (NR_003700, intron 1 of 16)	AluSz6|SINE|Alu	8091	NR_003700	375133		NR_003700	ENSG00000293427	PI4KAP2	-	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudo
197121	chr6	57335251	57335350	+	0	NA	intron (NM_000947, intron 5 of 13)	L1PA3|LINE|L1	17670	NM_000947	5558		NM_000947	ENSG00000146143	PRIM2	PRIM2A|p58	DNA primase subunit 2	protein-coding
11967	chr1	94039521	94039780	+	0	NA	intron (NM_000350, intron 24 of 49)	intron (NM_000350, intron 24 of 49)	81498	NM_000350	24		NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
171845	chr4	703571	704130	+	0	NA	Intergenic	Intergenic	-1982	NM_006315	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
98333	chr17	46270021	46270480	+	0	NA	Intergenic	Intergenic	-24881	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
74032	chr15	52234871	52235650	+	0	NA	intron (NM_018728, intron 23 of 40)	MER5B|DNA|hAT-Charlie	41940	NR_031670	100302202		NR_031670	ENSG00000221052	MIR1266	MIRN1266|hsa-mir-1266|mir-1266	microRNA 1266	ncRNA
238523	chrX	153690751	153691050	+	0	NA	intron (NM_005629, intron 2 of 12)	(CCA)n|Simple_repeat|Simple_repeat	1389	NM_001142806	6535		NM_005629	ENSG00000130821	SLC6A8	CCDS1|CRT|CRT-1|CRT1|CRTR|CT1|CTR5	solute carrier family 6 member 8	protein-coding
223323	chr8	143820651	143820750	+	0	NA	exon (NM_001271098, exon 5 of 12)	exon (NM_001271098, exon 5 of 12)	-4927	NM_015356	23513		NM_015356	ENSG00000180900	SCRIB	CRIB1|SCRB1|SCRIB1|Vartul|oSCRIB	scribble planar cell polarity protein	protein-coding
205202	chr7	7763401	7763600	+	0	NA	intron (NM_001302350, intron 3 of 4)	L1PA16|LINE|L1	-44893	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
149726	chr21	34154801	34155000	+	0	NA	Intergenic	Intergenic	-25777	NR_027267	114036		NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA
101524	chr17	67843951	67844430	+	0	NA	intron (NM_182641, intron 1 of 27)	AluSx|SINE|Alu	18687	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
179117	chr4	168874101	168874300	+	0	NA	intron (NM_001367568, intron 1 of 11)	MIRc|SINE|MIR	42105	NM_001367570	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
208918	chr7	74060751	74061200	+	0	NA	intron (NM_001278939, intron 26 of 33)	intron (NM_001278939, intron 26 of 33)	-22829	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
204058	chr7	1978971	1979330	+	0	NA	intron (NM_001304524, intron 13 of 16)	intron (NM_001304524, intron 13 of 16)	-38579	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
20881	chr1	202139501	202139980	+	0	NA	intron (NM_001256129, intron 1 of 5)	AluSz|SINE|Alu	4997	NM_138795	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
193646	chr6	30834371	30835130	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-4091	NR_130726	401247		NR_130726	ENSG00000214894	LINC00243	C6orf214|NCRNA00243	long intergenic non-protein coding RNA 243	ncRNA
143016	chr20	20734321	20734750	+	0	NA	Intergenic	Intergenic	-21891	NM_020343	57186		NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic subunit alpha 2	protein-coding
135654	chr2	168403651	168403950	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-52472	NM_203463	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
67717	chr14	73464921	73465180	+	0	NA	Intergenic	Intergenic	-1408	NR_135251	101928143		NR_135251	ENSG00000284930	LOC101928143	-	uncharacterized LOC101928143	ncRNA
108070	chr18	59899101	59900400	+	0	NA	promoter-TSS (NM_001382615)	promoter-TSS (NM_001382615)	-246	NM_021127	5366		NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding
223247	chr8	143633451	143634550	+	0	NA	Intergenic	AluYm1|SINE|Alu	-2019	NM_001261843	9831		NM_014789	ENSG00000183309	ZNF623	-	zinc finger protein 623	protein-coding
218571	chr8	55771471	55771700	+	0	NA	intron (NR_156454, intron 1 of 6)	AluJb|SINE|Alu	1793	NM_001286657	137695		NM_152417	ENSG00000167904	TMEM68	DIESL|MGAT/DGAT	transmembrane protein 68	protein-coding
18958	chr1	168555301	168556030	+	0	NA	Intergenic	Intergenic	-11668	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
203596	chr7	931721	932800	+	0	NA	intron (NM_006869, intron 2 of 10)	intron (NM_006869, intron 2 of 10)	-5044	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
72710	chr15	38652831	38653730	+	0	NA	Intergenic	Intergenic	-43318	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
52180	chr12	54307001	54307530	+	0	NA	Intergenic	Intergenic	-6228	NM_001261461	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
27825	chr10	38043371	38043750	+	0	NA	intron (NM_001278176, intron 5 of 5)	MIRc|SINE|MIR	32885	NM_001324177	7581		NM_006954	ENSG00000189180	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
57176	chr12	121431821	121432080	+	0	NA	intron (NM_001005366, intron 21 of 22)	AluSq|SINE|Alu	12402	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
5329	chr1	25245451	25245570	+	0	NA	intron (NR_135780, intron 2 of 4)	MER8|DNA|TcMar-Tigger	1944	NR_135786	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
20188	chr1	193067001	193067550	+	0	NA	intron (NM_001042370, intron 1 of 9)	AluY|SINE|Alu	-7199	NM_001350852	51377		NM_015984	ENSG00000116750	UCHL5	CGI-70|INO80R|UCH-L5|UCH37	ubiquitin C-terminal hydrolase L5	protein-coding
135904	chr2	171327301	171327500	+	0	NA	intron (NR_135568, intron 4 of 6)	MER117|DNA|hAT-Charlie	-96107	NM_001136554	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
114627	chr19	12984921	12986300	+	0	NA	Intergenic	Intergenic	-9865	NM_002501	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
201988	chr6	152300371	152300800	+	0	NA	intron (NM_033071, intron 92 of 145)	intron (NM_033071, intron 92 of 145)	-79945	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
70932	chr14	104393801	104395000	+	0	NA	Intergenic	Intergenic	170816	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
169036	chr3	152696001	152696480	+	0	NA	Intergenic	Intergenic	-138891	NM_002563	5028		NM_002563	ENSG00000169860	P2RY1	P2Y1|SARCC	purinergic receptor P2Y1	protein-coding
135753	chr2	169575371	169575680	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-1604	NM_001322049	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
100726	chr17	63889751	63889850	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	6774	NM_001317	1442		NM_001317	ENSG00000136488	CSH1	CS-1|CSA|CSMT|GHB3|PL|hCS-1|hCS-A	chorionic somatomammotropin hormone 1	protein-coding
217276	chr8	27349421	27350580	+	0	NA	intron (NM_173174, intron 6 of 35)	intron (NM_173174, intron 6 of 35)	24436	NM_173175	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
95715	chr17	38561671	38562500	+	0	NA	exon (NM_025248, exon 7 of 19)	exon (NM_025248, exon 7 of 19)	43867	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
36178	chr11	3174371	3174730	+	0	NA	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	-9240	NM_145638	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
39156	chr11	57318451	57318950	+	0	NA	intron (NM_033396, intron 3 of 11)	intron (NM_033396, intron 3 of 11)	6252	NM_033396	85456		NM_033396	ENSG00000149115	TNKS1BP1	CNOT12|TAB182	tankyrase 1 binding protein 1	protein-coding
20723	chr1	200880121	200880380	+	0	NA	Intergenic	Intergenic	7269	NM_005298	2848		NM_005298	ENSG00000170128	GPR25	-	G protein-coupled receptor 25	protein-coding
115582	chr19	15870701	15870900	+	0	NA	Intergenic	Intergenic	-5876	NM_001302493	102724279		NM_001302493	ENSG00000291059	CLEC4OP	CLEC4O|LINC01835	C-type lectin domain family 4 member O, pseudogene	pseudo
176163	chr4	83259771	83259930	+	0	NA	Intergenic	L1ME4a|LINE|L1	24948	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
87049	chr16	68293271	68293630	+	0	NA	intron (NM_001076785, intron 8 of 11)	intron (NM_001076785, intron 8 of 11)	17496	NM_032178	84138		NM_032178	ENSG00000103061	SLC7A6OS	EPM12|Iwr1	solute carrier family 7 member 6 opposite strand	protein-coding
95674	chr17	38327101	38327300	+	0	NA	exon (NM_001004334, exon 11 of 11)	exon (NM_001004334, exon 11 of 11)	16756	NM_001004334	440435		NM_001004334	ENSG00000277399	GPR179	CSNB1E|GPR158L|GPR158L1	G protein-coupled receptor 179	protein-coding
36871	chr11	10466401	10466600	+	0	NA	intron (NM_001172431, intron 2 of 13)	L1PA7|LINE|L1	5369	NM_001172430	272		NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
195161	chr6	35757651	35757750	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-18898	NM_207409	389383		NM_207409	ENSG00000196748	CLPSL2	AAAL3045|C6orf126|UNQ3045|dJ510O8.5	colipase like 2	protein-coding
43233	chr11	75450771	75450930	+	0	NA	5' UTR (NM_001351167, exon 2 of 13)	5' UTR (NM_001351167, exon 2 of 13)	1477	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
131825	chr2	98641321	98641780	+	0	NA	intron (NM_001160154, intron 7 of 12)	AluY|SINE|Alu	21923	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
85369	chr16	50272021	50272430	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	5674	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
81361	chr16	4839871	4840480	+	0	NA	intron (NR_136700, intron 3 of 14)	intron (NR_136700, intron 3 of 14)	7113	NM_032569	84656		NM_032569	ENSG00000140632	GLYR1	BM045|HIBDL|N-PAC|NP60|NPAC|hNDF	glyoxylate reductase 1 homolog	protein-coding
224695	chr9	21356701	21356900	+	0	NA	Intergenic	AluSz|SINE|Alu	-5913	NM_021002	3443		NM_021002	ENSG00000120235	IFNA6	IFN-alphaK	interferon alpha 6	protein-coding
193990	chr6	31768851	31769150	+	0	NA	intron (NM_025258, intron 10 of 16).6	intron (NM_025258, intron 10 of 16).6	-3412	NR_126423	104413891		NR_126423		SAPCD1-AS1	C6orf26-AS1	SAPCD1 antisense RNA 1	ncRNA
59692	chr13	29543251	29543550	+	0	NA	intron (NM_003045, intron 2 of 12)	intron (NM_003045, intron 2 of 12)	52288	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
123044	chr19	51273451	51273550	+	0	NA	intron (NR_136526, intron 1 of 2)	AluSz6|SINE|Alu	2234	NR_136526	105372444		NR_136526	ENSG00000268318	LINC01872	-	long intergenic non-protein coding RNA 1872	ncRNA
95927	chr17	38921571	38922080	+	0	NA	TTS (NM_001271608)	TTS (NM_001271608)	-3343	NR_038847	100505576		NM_001414697	ENSG00000263874	LASP1NB	LINC00672	LASP1 neighbor	protein-coding
219156	chr8	66440551	66440930	+	0	NA	intron (NM_144650, intron 2 of 13)	intron (NM_144650, intron 2 of 13)	8236	NM_144650	137872		NM_144650	ENSG00000147576	ADHFE1	ADH8|HMFT2263|HOT	alcohol dehydrogenase iron containing 1	protein-coding
39398	chr11	60718021	60718480	+	0	NA	Intergenic	LTR2752|LTR|ERV1	-5759	NM_001354471	728588		NM_001310141	ENSG00000214782	MS4A18	-	membrane spanning 4-domains A18	protein-coding
17135	chr1	156180121	156180580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13754	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
187930	chr5	148861021	148861400	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	34599	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
11749	chr1	92080071	92080920	+	0	NA	5' UTR (NM_001376131, exon 1 of 18)	5' UTR (NM_001376131, exon 1 of 18)	150	NM_001376131	284697		NM_015237	ENSG00000189195	BTBD8	KIAA1107	BTB domain containing 8	protein-coding
119650	chr19	40816551	40817030	+	0	NA	Intergenic	AluJr|SINE|Alu	-5690	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
15741	chr1	151074251	151074550	+	0	NA	intron (NM_001323912, intron 2 of 7)	AluY|SINE|Alu	3639	NM_001323912	126626		NM_144618	ENSG00000143458	GABPB2	GABPB-2	GA binding protein transcription factor subunit beta 2	protein-coding
156075	chr22	40040901	40041580	+	0	NA	3' UTR (NM_138435, exon 5 of 5)	3' UTR (NM_138435, exon 5 of 5)	3290	NR_163486	114841040		NR_163486	ENSG00000261202	TNRC6B-DT	-	TNRC6B divergent transcript	ncRNA
227489	chr9	91176501	91176700	+	0	NA	intron (NR_135306, intron 2 of 2)	intron (NR_135306, intron 2 of 2)	57538	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
123922	chr19	55361401	55361600	+	0	NA	intron (NM_001145402, intron 3 of 10)	intron (NM_001145402, intron 3 of 10)	1760	NM_001145402	284418		NM_001145402	ENSG00000180043	GARIN5B	C19orf16|FAM71E2	golgi associated RAB2 interactor family member 5B	protein-coding
215048	chr7	152586021	152586350	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	89956	NM_005431	7516		NM_005431	ENSG00000196584	XRCC2	FANCU|POF17|SPGF50	X-ray repair cross complementing 2	protein-coding
191699	chr6	13649321	13649580	+	0	NA	intron (NM_005493, intron 5 of 13)	intron (NM_005493, intron 5 of 13)	34115	NM_016167	51406		NM_016167	ENSG00000225921	NOL7	C6orf90|PQBP3|RARG-1|dJ223E5.2	nucleolar protein 7	protein-coding
61243	chr13	49938371	49938530	+	0	NA	Intergenic	MER57A1|LTR|ERV1	-1949	NM_001127482	57213		NM_020456	ENSG00000123178	SPRYD7	C13orf1|CLLD6	SPRY domain containing 7	protein-coding
71047	chr14	104791751	104791950	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	1751	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
148182	chr20	63542751	63543730	+	0	NA	intron (NM_080823, intron 3 of 7)	intron (NM_080823, intron 3 of 7)	4264	NM_080823	6725		NM_080823	ENSG00000125508	SRMS	C20orf148|PTK70|SRM|dJ697K14.1	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding
136682	chr2	181108451	181108550	+	0	NA	Intergenic	Intergenic	-15337	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
161461	chr3	42216021	42216500	+	0	NA	intron (NM_001042646, intron 14 of 15)	intron (NM_001042646, intron 14 of 15)	47687	NM_001174138	885		NM_000729	ENSG00000187094	CCK	-	cholecystokinin	protein-coding
161790	chr3	45104121	45104380	+	0	NA	intron (NM_022842, intron 4 of 8)	intron (NM_022842, intron 4 of 8)	42128	NM_022842	64866		NM_022842	ENSG00000163814	CDCP1	CD318|SIMA135|TRASK	CUB domain containing protein 1	protein-coding
144935	chr20	37013021	37013280	+	0	NA	intron (NM_183404, intron 19 of 20)	SVA_D|Retroposon|SVA	-61442	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
201549	chr6	149215801	149216280	+	0	NA	Intergenic	Intergenic	-1884	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
119900	chr19	41559521	41560180	+	0	NA	intron (NM_001288773, intron 1 of 7)	FAM|SINE|Alu	10332	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
131547	chr2	96760501	96761600	+	0	NA	exon (NM_020184, exon 1 of 7)	exon (NM_020184, exon 1 of 7)	148	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
141112	chr2	238720101	238720350	+	0	NA	Intergenic	Intergenic	127682	NR_157851	100287387		NR_157851		LOC100287387	-	uncharacterized LOC100287387	ncRNA
64081	chr14	22582401	22583400	+	0	NA	intron (NM_001344, intron 1 of 2)	AluSx|SINE|Alu	6324	NM_001344	1603		NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
189849	chr5	177113421	177114680	+	0	NA	Intergenic	Intergenic	-19029	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
229687	chr9	124625001	124625400	+	0	NA	intron (NM_033334, intron 2 of 9)	MIRc|SINE|MIR	-33236	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
98654	chr17	47827801	47828100	+	0	NA	intron (NR_037575, intron 2 of 4)	AluSc8|SINE|Alu	3591	NR_037575	124995		NM_145255	ENSG00000159111	MRPL10	L10MT|MRP-L10|MRP-L8|MRPL8|RPML8|uL10m	mitochondrial ribosomal protein L10	protein-coding
199286	chr6	111977101	111977300	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-67803	NR_149099	105377946		NR_149099		LINC02527	-	long intergenic non-protein coding RNA 2527	ncRNA
60792	chr13	45321971	45322130	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	14397	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
38087	chr11	35203921	35205130	+	0	NA	exon (NM_000610, exon 10 of 18)	exon (NM_000610, exon 10 of 18)	41575	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
48019	chr12	6939771	6939930	+	0	NA	intron (NM_001007026, intron 7 of 9)	intron (NM_001007026, intron 7 of 9)	-3588	NM_001301836	113246		NM_138425	ENSG00000111678	C12orf57	C10|GRCC10	chromosome 12 open reading frame 57	protein-coding
41163	chr11	65609301	65610130	+	0	NA	intron (NM_002419, intron 1 of 9)	intron (NM_002419, intron 1 of 9)	4506	NM_002419	4296		NM_002419	ENSG00000173327	MAP3K11	MEKK11|MLK-3|MLK3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding
159428	chr3	13627951	13628080	+	0	NA	intron (NM_001004019, intron 11 of 17)	intron (NM_001004019, intron 11 of 17)	9634	NR_132775	106635526		NR_132775		SNORA93	-	small nucleolar RNA, H/ACA box 93	snoRNA
229719	chr9	124858621	124859080	+	0	NA	TTS (NM_001276376)	TTS (NM_001276376)	3107	NM_007209	11224		NM_007209	ENSG00000136942	RPL35	DBA19|L35|uL29	ribosomal protein L35	protein-coding
198797	chr6	109002951	109003480	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	5773	NM_001199934	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
15978	chr1	151920251	151920400	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-10814	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
16865	chr1	155750301	155751030	+	0	NA	TTS (NR_024117).2	TTS (NR_024117).2	4897	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
67925	chr14	74651471	74651630	+	0	NA	Intergenic	Intergenic	-39313	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
116554	chr19	18223651	18225130	+	0	NA	5' UTR (NM_001098819, exon 1 of 15)	5' UTR (NM_001098819, exon 1 of 15)	103	NM_001098819	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
3226	chr1	13776271	13776430	+	0	NA	intron (NM_015866, intron 7 of 8)	intron (NM_015866, intron 7 of 8)	26935	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
126501	chr2	28406371	28407750	+	0	NA	intron (NM_005253, intron 2 of 3)	intron (NM_005253, intron 2 of 3)	-12388	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
163123	chr3	50126951	50127880	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-26427	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
223029	chr8	143334021	143335550	+	0	NA	promoter-TSS (NM_052963)	promoter-TSS (NM_052963)	95	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
99568	chr17	50467551	50467850	+	0	NA	promoter-TSS (NR_110232)	promoter-TSS (NR_110232)	-629	NR_110232	80221		NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
107877	chr18	55589601	55590150	+	0	NA	promoter-TSS (NM_001243228)	promoter-TSS (NM_001243228)	-64	NM_001369576	6925		NM_003199	ENSG00000196628	TCF4	CDG2T|E2-2|FCD2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
206712	chr7	36527021	36527280	+	0	NA	intron (NM_001177506, intron 19 of 21)	intron (NM_001177506, intron 19 of 21)	72970	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
237879	chrX	130958801	130959380	+	0	NA	Intergenic	L1PA2|LINE|L1	-55773	NM_182314	10495		NM_006375	ENSG00000165675	ENOX2	APK1|COVA1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding
162414	chr3	48271321	48271780	+	0	NA	TTS (NM_016089)	TTS (NM_016089)	20128	NR_134638	101060195		NR_134638		FCF1P2	-	FCF1 pseudogene 2	pseudo
165883	chr3	106184871	106185750	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-315909	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
155676	chr22	39040301	39041300	+	0	NA	promoter-TSS (NM_145298)	promoter-TSS (NM_145298)	-64	NM_145298	200316		NM_145298	ENSG00000128394	APOBEC3F	A3F|ARP8|BK150C2.4.MRNA|KA6	apolipoprotein B mRNA editing enzyme catalytic subunit 3F	protein-coding
147559	chr20	60097371	60097550	+	0	NA	intron (NR_109918, intron 2 of 4)	intron (NR_109918, intron 2 of 4)	9774	NR_109918	729296		NR_109916	ENSG00000228340	LOC729296	-	uncharacterized LOC729296	ncRNA
168808	chr3	152208621	152208880	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-3321	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
133772	chr2	127664251	127664550	+	0	NA	5' UTR (NM_017980, exon 1 of 10)	5' UTR (NM_017980, exon 1 of 10)	193	NM_017980	55679		NM_017980	ENSG00000072163	LIMS2	LGMD2W|MDRCMTT|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
82258	chr16	15135451	15136000	+	0	NA	non-coding (NR_123721, exon 3 of 29)	non-coding (NR_123721, exon 3 of 29)	1234	NR_123721	105369154		NR_123721	ENSG00000270580	PKD1P6-NPIPP1	-	PKD1P6-NPIPP1 readthrough	pseudo
33185	chr10	113126601	113126900	+	0	NA	5' UTR (NM_001349871, exon 1 of 12)	5' UTR (NM_001349871, exon 1 of 12)	117	NM_001349871	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
16890	chr1	155858671	155859800	+	0	NA	promoter-TSS (NM_152280)	promoter-TSS (NM_152280)	165	NM_001282856	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
7743	chr1	36153221	36153800	+	0	NA	intron (NM_001270895, intron 1 of 4)	intron (NM_001270895, intron 1 of 4)	2543	NM_001270895	27095		NM_014408	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex subunit 3	protein-coding
99739	chr17	50925701	50925900	+	0	NA	Intergenic	Intergenic	-57822	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
203568	chr7	903621	904100	+	0	NA	intron (NM_006869, intron 6 of 10)	intron (NM_006869, intron 6 of 10)	17029	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
60981	chr13	46679501	46680550	+	0	NA	intron (NM_015116, intron 3 of 18)	intron (NM_015116, intron 3 of 18)	117136	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
8031	chr1	38048601	38048800	+	0	NA	intron (NR_168386, intron 1 of 4)	intron (NR_168386, intron 1 of 4)	1566	NR_168387	105378653		NR_168386		MIR3659HG	-	MIR3659 host gene	ncRNA
96986	chr17	42273671	42274600	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	2256	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
26791	chr10	23331171	23331800	+	0	NA	intron (NM_001371909, intron 2 of 15)	G-rich|Low_complexity|Low_complexity	-12472	NR_155752	105376453		NR_155752	ENSG00000224215	C10orf67-AS1	-	C10orf67 antisense RNA 1	ncRNA
166569	chr3	115792051	115792900	+	0	NA	Intergenic	Intergenic	112651	NR_145779	109623450		NR_145779		SNORD155	-	small nucleolar RNA, C/D box 155	snoRNA
218820	chr8	59113171	59113330	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	5897	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
76831	chr15	77409621	77410450	+	0	NA	intron (NM_001385027, intron 1 of 6)	intron (NM_001385027, intron 1 of 6)	10069	NM_001385026	79834		NM_024776	ENSG00000173517	PEAK1	SGK269	pseudopodium enriched atypical kinase 1	protein-coding
112144	chr19	5615871	5616630	+	0	NA	exon (NM_014649, exon 4 of 21)	exon (NM_014649, exon 4 of 21)	6526	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
196789	chr6	45681821	45682300	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	255537	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
131792	chr2	98505501	98506300	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	59890	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
43315	chr11	76238101	76238300	+	0	NA	Intergenic	Intergenic	-31698	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
90202	chr17	418121	418800	+	0	NA	Intergenic	AluJb|SINE|Alu	-4437	NR_136407	105371430		NR_136407	ENSG00000241525	LOC105371430	-	uncharacterized LOC105371430	ncRNA
120197	chr19	42279251	42281780	+	0	NA	intron (NM_001379480, intron 2 of 20)	CpG	-3954	NM_001379484	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
158553	chr3	4406701	4407100	+	0	NA	intron (NM_182760, intron 7 of 8)	intron (NM_182760, intron 7 of 8)	60369	NM_182760	285362		NM_182760	ENSG00000144455	SUMF1	AAPA3037|FGE|UNQ3037	sulfatase modifying factor 1	protein-coding
17514	chr1	156749721	156750680	+	0	NA	intron (NM_001319188, intron 1 of 6)	intron (NM_001319188, intron 1 of 6)	1093	NM_001319188	3068		NM_004494	ENSG00000143321	HDGF	HMG1L2	heparin binding growth factor	protein-coding
13716	chr1	116777801	116778400	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	23670	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
190290	chr5	179587321	179587580	+	0	NA	intron (NM_001040452, intron 8 of 17).2	AluY|SINE|Alu	16291	NR_110560	101928445		NR_110560	ENSG00000244945	RUFY1-AS1	-	RUFY1 antisense RNA 1	ncRNA
166680	chr3	120346071	120346450	+	0	NA	intron (NM_001099678, intron 1 of 3)	AluSz|SINE|Alu	3094	NM_001099678	116064		NM_001099678	ENSG00000163428	LRRC58	-	leucine rich repeat containing 58	protein-coding
30301	chr10	75233451	75235100	+	0	NA	intron (NM_144589, intron 6 of 6)	CpG	1682	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
51491	chr12	52096921	52097680	+	0	NA	intron (NR_120440, intron 1 of 1)	SATR1|Satellite|Satellite	3731	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
55499	chr12	104790451	104790800	+	0	NA	Intergenic	Intergenic	167665	NM_001352170	84102		NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
51805	chr12	53391351	53391730	+	0	NA	intron (NM_138473, intron 3 of 5)	AluSc|SINE|Alu	10896	NM_003109	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
221138	chr8	118621071	118622550	+	0	NA	exon (NM_001349811, exon 1 of 5)	exon (NM_001349811, exon 1 of 5)	153	NM_207506	401474		NM_207506	ENSG00000177570	SAMD12	BAFME|BAFME1|FAME|FAME1|FCMTE1|MEBA	sterile alpha motif domain containing 12	protein-coding
36003	chr11	2894851	2894950	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-4791	NM_183233	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
206441	chr7	32869221	32869480	+	0	NA	exon (NM_015483, exon 4 of 4)	exon (NM_015483, exon 4 of 4)	22410	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
107371	chr18	46013421	46013680	+	0	NA	intron (NM_024430, intron 4 of 14)	intron (NM_024430, intron 4 of 14)	-46221	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
142759	chr20	10502151	10502480	+	0	NA	intron (NM_001009608, intron 2 of 7)	L2a|LINE|L2	67010	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
53353	chr12	64651471	64652080	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJb|SINE|Alu	-29170	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
52833	chr12	57063951	57065200	+	0	NA	intron (NM_015257, intron 4 of 7)	intron (NM_015257, intron 4 of 7)	-13377	NM_001256041	4640		NM_005379	ENSG00000166866	MYO1A	BBMI|DFNA48|MIHC|MYHL	myosin IA	protein-coding
217249	chr8	27298621	27298880	+	0	NA	intron (NM_171982, intron 1 of 5)	intron (NM_171982, intron 1 of 5)	12522	NM_001362813	23087		NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
82778	chr16	21445601	21446650	+	0	NA	TTS (NR_027155)	TTS (NR_027155)	-11670	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
76138	chr15	72554551	72554950	+	0	NA	intron (NM_005744, intron 3 of 13)	AluJb|SINE|Alu	-32467	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
199663	chr6	122455051	122455350	+	0	NA	intron (NM_020755, intron 3 of 9)	MLT2A2|LTR|ERVL	16607	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
30972	chr10	87872771	87873830	+	0	NA	intron (NM_001304717, intron 2 of 9)	MIRb|SINE|MIR	9675	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
69341	chr14	93954751	93956050	+	0	NA	intron (NM_016150, intron 1 of 7)	intron (NM_016150, intron 1 of 7)	1647	NM_016150	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
176310	chr4	87406401	87407000	+	0	NA	Intergenic	HERVK14-int|LTR|ERVK	-15512	NM_016245	51170		NM_016245	ENSG00000198189	HSD17B11	17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2	hydroxysteroid 17-beta dehydrogenase 11	protein-coding
26982	chr10	26776271	26776430	+	0	NA	intron (NR_145410, intron 3 of 11)	intron (NR_145410, intron 3 of 11)	78649	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
121409	chr19	46976651	46977330	+	0	NA	intron (NM_004491, intron 3 of 6)	intron (NM_004491, intron 3 of 6)	-42847	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
222691	chr8	141270601	141270800	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	16133	NR_161376	105375787		NR_161376	ENSG00000254019	SLC45A4-AS1	-	SLC45A4 antisense RNA 1	ncRNA
208692	chr7	73239301	73239700	+	0	NA	Intergenic	AluSx1|SINE|Alu	18861	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
4458	chr1	21340471	21340830	+	0	NA	intron (NM_001113348, intron 1 of 18)	AluSz|SINE|Alu	4854	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
163770	chr3	52378871	52379650	+	0	NA	intron (NM_015512, intron 47 of 77)	intron (NM_015512, intron 47 of 77)	30748	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
144502	chr20	35685421	35686200	+	0	NA	intron (NM_001198989, intron 4 of 11)	AluSq|SINE|Alu	13542	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
27599	chr10	32650271	32650850	+	0	NA	intron (NM_001321115, intron 21 of 43)	L1PA16|LINE|L1	204420	NR_109827	79741		NM_024688	ENSG00000216937	CCDC7	BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68	coiled-coil domain containing 7	protein-coding
220947	chr8	109213571	109213830	+	0	NA	Intergenic	LTR13|LTR|ERVK	116233	NM_001128211	84955		NM_032869	ENSG00000120526	NUDCD1	CML66|OVA66	NudC domain containing 1	protein-coding
77161	chr15	80017671	80018000	+	0	NA	Intergenic	L1MC1|LINE|L1	-41733	NM_001242918	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
199764	chr6	125858621	125858900	+	0	NA	intron (NM_001199620, intron 5 of 17)	intron (NM_001199620, intron 5 of 17)	-39902	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
25840	chr10	11223221	11223980	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	58570	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
196617	chr6	44254301	44255500	+	0	NA	promoter-TSS (NR_039790)	promoter-TSS (NR_039790)	-615	NR_039790	100616124		NR_039790	ENSG00000284427	MIR4647	mir-4647	microRNA 4647	ncRNA
6487	chr1	28371171	28371580	+	0	NA	intron (NM_001350158, intron 1 of 14)	AluSx|SINE|Alu	1635	NM_001350158	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
4289	chr1	19881201	19881400	+	0	NA	Intergenic	L1PA16|LINE|L1	-1095	NM_015207	23252		NM_015207	ENSG00000169914	OTUD3	DUBA4	OTU deubiquitinase 3	protein-coding
146047	chr20	47356371	47357200	+	0	NA	promoter-TSS (NM_001281779)	promoter-TSS (NM_001281779)	-86	NM_001281776	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
226216	chr9	65761901	65762600	+	0	NA	Intergenic	Intergenic	25104	NM_199244	349334		NM_199244	ENSG00000184659	FOXD4L4	FOXD4L2|FOXD4b|bA460E7.2	forkhead box D4 like 4	protein-coding
20206	chr1	193123901	193124100	+	0	NA	intron (NM_024529, intron 1 of 16)	L2c|LINE|L2	1969	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
193679	chr6	31068801	31069270	+	0	NA	Intergenic	Intergenic	15585	NR_003948	285834		NM_001348249	ENSG00000228789	HCG22	PBMUCL2	HLA complex group 22 (non-protein coding)	ncRNA
212994	chr7	130993671	130994950	+	0	NA	intron (NR_109855, intron 2 of 4)	intron (NR_109855, intron 2 of 4)	80846	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
82941	chr16	21852051	21853050	+	0	NA	intron (NM_001384982, intron 2 of 8)	intron (NM_001384982, intron 2 of 8)	5107	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
210125	chr7	98201771	98201930	+	0	NA	intron (NM_014916, intron 11 of 13)	AluJr|SINE|Alu	-9589	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
77868	chr15	88904171	88905980	+	0	NA	intron (NM_001114614, intron 5 of 6)	intron (NM_001114614, intron 5 of 6)	8093	NM_001310321	4240		NM_005928	ENSG00000140545	MFGE8	BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47	milk fat globule EGF and factor V/VIII domain containing	protein-coding
34072	chr10	124977721	124978150	+	0	NA	intron (NM_017580, intron 5 of 8)	intron (NM_017580, intron 5 of 8)	28083	NM_001363508	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
198542	chr6	106553851	106554350	+	0	NA	intron (NM_001371242, intron 16 of 21)	intron (NM_001371242, intron 16 of 21)	42245	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
98215	chr17	46140901	46141630	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	51517	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
169584	chr3	170865121	170865380	+	0	NA	non-coding (NR_135259, exon 4 of 4)	non-coding (NR_135259, exon 4 of 4)	4945	NR_135259	200916		NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22 like 1	protein-coding
225706	chr9	36597351	36597750	+	0	NA	intron (NM_014791, intron 6 of 17)	intron (NM_014791, intron 6 of 17)	24655	NM_014791	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
65940	chr14	55429721	55430480	+	0	NA	intron (NM_199047, intron 4 of 6)	intron (NM_199047, intron 4 of 6)	10445	NM_199047	387332		NM_199047	ENSG00000182521	TBPL2	TBP2|TRF3	TATA-box binding protein like 2	protein-coding
46572	chr11	128501121	128501500	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	21000	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
2497	chr1	9686751	9688080	+	0	NA	non-coding (NR_126366, exon 1 of 3)	non-coding (NR_126366, exon 1 of 3)	159	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
53634	chr12	68180701	68181680	+	0	NA	Intergenic	LTR33B|LTR|ERVL	-21450	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
232432	chr9	136104321	136104580	+	0	NA	Intergenic	Intergenic	-9161	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
92553	chr17	8960521	8961180	+	0	NA	intron (NM_001142633, intron 1 of 18)	(CACCC)n|Simple_repeat|Simple_repeat	4857	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
173529	chr4	9994371	9994730	+	0	NA	intron (NM_020041, intron 3 of 11)	(TTT)n|Simple_repeat|Simple_repeat	26947	NM_020041	56606		NM_020041	ENSG00000109667	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 member 9	protein-coding
142931	chr20	18565271	18565430	+	0	NA	Intergenic	L1ME1|LINE|L1	-2070	NM_001348958	388789		NM_001348957	ENSG00000232388	SMIM26	LINC00493	small integral membrane protein 26	protein-coding
85167	chr16	46693671	46693830	+	0	NA	intron (NM_014321, intron 4 of 6)	AluJr4|SINE|Alu	4091	NR_037620	23594		NM_014321	ENSG00000091651	ORC6	ORC6L	origin recognition complex subunit 6	protein-coding
188654	chr5	157242821	157243080	+	0	NA	intron (NM_005546, intron 11 of 16)	intron (NM_005546, intron 11 of 16)	-23173	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
3747	chr1	16643921	16645930	+	0	NA	promoter-TSS (NR_027504)	promoter-TSS (NR_027504)	-649	NR_027504	11209		NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
200774	chr6	137868711	137869790	+	0	NA	intron (NM_001270508, intron 1 of 8)	L2b|LINE|L2	-1017	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
117224	chr19	19416251	19416630	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	10765	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
123450	chr19	54142301	54142900	+	0	NA	intron (NM_014516, intron 1 of 17).8	intron (NM_014516, intron 1 of 17).8	4838	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
237846	chrX	130104401	130105000	+	0	NA	intron (NM_001127197, intron 1 of 8)	MIRb|SINE|MIR	5797	NM_001421	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
191970	chr6	16149301	16149830	+	0	NA	Intergenic	Intergenic	8009	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
155649	chr22	38988201	38988400	+	0	NA	intron (NM_004900, intron 4 of 7)	intron (NM_004900, intron 4 of 7)	5953	NM_001270411	9582		NM_004900	ENSG00000179750	APOBEC3B	A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2	apolipoprotein B mRNA editing enzyme catalytic subunit 3B	protein-coding
213487	chr7	139049271	139050350	+	0	NA	intron (NM_020119, intron 12 of 12)	intron (NM_020119, intron 12 of 12)	-5653	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
105832	chr18	2980301	2980800	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	31397	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
66882	chr14	65098221	65099080	+	0	NA	intron (NR_073137, intron 1 of 3)	intron (NR_073137, intron 1 of 3)	3867	NM_002382	4149		NM_002382	ENSG00000125952	MAX	PDMCS|bHLHd4	MYC associated factor X	protein-coding
127095	chr2	37615451	37616600	+	0	NA	Intergenic	Intergenic	55617	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
146229	chr20	48809751	48810500	+	0	NA	intron (NM_020820, intron 1 of 39)	Charlie8|DNA|hAT-Charlie	17874	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
152930	chr22	22798251	22798550	+	0	NA	Intergenic	Intergenic	-24376	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
109755	chr19	1116501	1117100	+	0	NA	intron (NM_001100122, intron 13 of 28).2	intron (NM_001100122, intron 13 of 28).2	12150	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
188904	chr5	160115521	160115780	+	0	NA	intron (NR_146217, intron 1 of 5)	AluSx1|SINE|Alu	3800	NR_146216	114825		NM_052927	ENSG00000170234	PWWP2A	MST101	PWWP domain containing 2A	protein-coding
3608	chr1	16274321	16274580	+	0	NA	intron (NM_018994, intron 4 of 9)	L1ME3|LINE|L1	-37267	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
171435	chr3	196276551	196277080	+	0	NA	intron (NM_001312673, intron 1 of 8)	AluJb|SINE|Alu	10911	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
178638	chr4	152327851	152328150	+	0	NA	intron (NM_033632, intron 9 of 11)	intron (NM_033632, intron 9 of 11)	-9674	NR_104273	102191832		NR_104273	ENSG00000270751	FBXW7-AS1	DEAR|DEspR	FBXW7 antisense RNA 1	ncRNA
50967	chr12	49551101	49551700	+	0	NA	intron (NM_001314030, intron 10 of 14)	AluSx1|SINE|Alu	12370	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
18241	chr1	161049271	161049900	+	0	NA	exon (NM_001287602, exon 7 of 8)	exon (NM_001287602, exon 7 of 8)	-3608	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
89263	chr16	88660671	88661450	+	0	NA	intron (NM_002461, intron 1 of 9)	L1MD1|LINE|L1	2031	NM_002461	4597		NM_002461	ENSG00000167508	MVD	FP17780|MDDase|MPD|POROK7	mevalonate diphosphate decarboxylase	protein-coding
212129	chr7	116239051	116239150	+	0	NA	intron (NM_015641, intron 2 of 6)	MLT1E2|LTR|ERVL-MaLR	16147	NM_152829	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
120222	chr19	42307951	42308450	+	0	NA	intron (NM_199285, intron 1 of 2)	intron (NM_199285, intron 1 of 2)	-5109	NM_001366910	284339		NM_173633	ENSG00000167619	TMEM145	-	transmembrane protein 145	protein-coding
2007	chr1	6746071	6746230	+	0	NA	Intergenic	AluJo|SINE|Alu	18623	NR_104621	100505887		NR_104620		LINC01672	NMR	long intergenic non-protein coding RNA 1672	ncRNA
200673	chr6	137216871	137217350	+	0	NA	intron (NM_001363526, intron 1 of 7)	intron (NM_001363526, intron 1 of 7)	2086	NM_001363526	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
21153	chr1	203692321	203692780	+	0	NA	intron (NM_001365783, intron 2 of 20)	L3b|LINE|CR1	-37031	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
44503	chr11	106076501	106078300	+	0	NA	promoter-TSS (NM_198439)	promoter-TSS (NM_198439)	-53	NM_198439	143879		NM_152433	ENSG00000182359	KBTBD3	BKLHD3	kelch repeat and BTB domain containing 3	protein-coding
189876	chr5	177310751	177311300	+	0	NA	intron (NM_031300, intron 2 of 5)	L2c|LINE|L2	873	NM_031300	83463		NM_031300	ENSG00000213347	MXD3	BHLHC13|MAD3|MYX	MAX dimerization protein 3	protein-coding
39028	chr11	47759921	47760180	+	0	NA	intron (NM_015308, intron 2 of 16)	intron (NM_015308, intron 2 of 16)	7291	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
188753	chr5	157571121	157571980	+	0	NA	intron (NM_033274, intron 1 of 22)	L2a|LINE|L2	4225	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
36669	chr11	8192571	8192930	+	0	NA	Intergenic	Intergenic	-23725	NM_001346693	79608		NM_024557	ENSG00000166405	RIC3	AYST720|PRO1385|RIC-3	RIC3 acetylcholine receptor chaperone	protein-coding
201576	chr6	149332551	149332850	+	0	NA	intron (NM_015093, intron 1 of 8)	intron (NM_015093, intron 1 of 8)	14400	NM_015093	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
58944	chr13	19775171	19775530	+	0	NA	intron (NM_001354909, intron 1 of 8)	AluSx3|SINE|Alu	7595	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
107658	chr18	48996671	48997650	+	0	NA	Intergenic	Intergenic	-26543	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
88696	chr16	85819231	85819780	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	19810	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
239458	chrY	56719301	56720050	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-234580	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
68036	chr14	75180371	75180730	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3938	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
5945	chr1	26886801	26887900	+	0	NA	intron (NM_018066, intron 2 of 4)	intron (NM_018066, intron 2 of 4)	2933	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
168977	chr3	152399421	152400230	+	0	NA	intron (NM_001314057, intron 3 of 11)	intron (NM_001314057, intron 3 of 11)	-58835	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
217027	chr8	23239601	23240230	+	0	NA	Intergenic	AluY|SINE|Alu	-3722	NM_152272	91782		NM_152272	ENSG00000147457	CHMP7	-	charged multivesicular body protein 7	protein-coding
126386	chr2	27498971	27499330	+	0	NA	exon (NM_001486, exon 6 of 19)	exon (NM_001486, exon 6 of 19)	2311	NM_001486	2646		NM_001486	ENSG00000084734	GCKR	FGQTL5|GKRP	glucokinase regulator	protein-coding
140755	chr2	234490871	234492380	+	0	NA	Intergenic	Intergenic	5424	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
91864	chr17	7231821	7232350	+	0	NA	intron (NM_004422, intron 1 of 14)	intron (NM_004422, intron 1 of 14)	2432	NM_004422	1856		NM_004422	ENSG00000004975	DVL2	-	dishevelled segment polarity protein 2	protein-coding
161338	chr3	40202221	40203130	+	0	NA	intron (NM_015460, intron 10 of 16)	MIRb|SINE|MIR	102664	NM_001284426	25924		NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
54067	chr12	76031201	76033000	+	0	NA	promoter-TSS (NM_007350)	promoter-TSS (NM_007350)	-324	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
107908	chr18	57437551	57438330	+	0	NA	intron (NM_004852, intron 1 of 1)	CpG	2566	NM_004852	9480		NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
183115	chr5	74670471	74670630	+	0	NA	intron (NM_001292004, intron 1 of 13)	LTR28C|LTR|ERV1	-14683	NM_000521	3074		NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding
10780	chr1	77421551	77421930	+	0	NA	intron (NM_174858, intron 8 of 13)	intron (NM_174858, intron 8 of 13)	138653	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
84427	chr16	30380551	30381030	+	0	NA	intron (NM_052838, intron 7 of 11)	AluJo|SINE|Alu	1771	NM_001365977	1731		NM_052838	ENSG00000180096	SEPTIN1	DIFF6|LARP|PNUTL3|SEP1|SEPT1|Septin-1	septin 1	protein-coding
107268	chr18	42113921	42114670	+	0	NA	Intergenic	Intergenic	-72373	NR_046454	284260		NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA
164922	chr3	71168851	71169350	+	0	NA	intron (NM_001244810, intron 6 of 20)	intron (NM_001244810, intron 6 of 20)	-36903	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
133075	chr2	112430551	112431180	+	0	NA	intron (NM_005054, intron 1 of 22).3	AluJb|SINE|Alu	2749	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
79562	chr16	978271	979030	+	0	NA	intron (NR_164342, intron 2 of 3)	intron (NR_164342, intron 2 of 3)	2963	NR_164339	115804232		NR_036442	ENSG00000260807	CEROX1	-	cytoplasmic endogenous regulator of oxidative phosphorylation 1	ncRNA
110288	chr19	1828051	1828350	+	0	NA	exon (NM_020695, exon 2 of 16)	exon (NM_020695, exon 2 of 16)	6111	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
10634	chr1	70206951	70207280	+	0	NA	intron (NM_001350606, intron 1 of 12)	AluSz6|SINE|Alu	1419	NM_001190987	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
20747	chr1	200976921	200977380	+	0	NA	intron (NM_017596, intron 30 of 33)	intron (NM_017596, intron 30 of 33)	46564	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
206015	chr7	26293801	26294900	+	0	NA	intron (NM_001318199, intron 1 of 6)	MIRb|SINE|MIR	1319	NM_001318199	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
212842	chr7	130721901	130722100	+	0	NA	Intergenic	Intergenic	12207	NM_138693	136259		NM_138693	ENSG00000266265	KLF14	BTEB5	KLF transcription factor 14	protein-coding
83003	chr16	22194501	22194960	+	0	NA	Intergenic	L2a|LINE|L2	-11548	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
217436	chr8	28496101	28496300	+	0	NA	intron (NM_145866, intron 1 of 6)	intron (NM_145866, intron 1 of 6)	1988	NM_017412	7976		NM_017412	ENSG00000104290	FZD3	Fz-3	frizzled class receptor 3	protein-coding
173295	chr4	7081821	7082180	+	0	NA	Intergenic	LTR55|LTR|ERVL?	-13936	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
153682	chr22	29079221	29079680	+	0	NA	intron (NM_001039570, intron 1 of 8)	intron (NM_001039570, intron 1 of 8)	6415	NM_032045	83999		NM_032045	ENSG00000183762	KREMEN1	ECTD13|KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
183328	chr5	76722351	76722850	+	0	NA	intron (NM_001992, intron 1 of 1)	intron (NM_001992, intron 1 of 1)	6474	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
135786	chr2	169789901	169790330	+	0	NA	Intergenic	Intergenic	-8756	NM_003142	6741		NM_003142	ENSG00000138385	SSB	LARP3|La|La/SSB	small RNA binding exonuclease protection factor La	protein-coding
182281	chr5	57229021	57229680	+	0	NA	intron (NM_001127235, intron 3 of 11)	L1M5|LINE|L1	15276	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
47391	chr12	2793371	2793530	+	0	NA	intron (NR_146317, intron 2 of 3)	intron (NR_146317, intron 2 of 3)	-1520	NM_002014	2288		NM_002014	ENSG00000004478	FKBP4	FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52	FKBP prolyl isomerase 4	protein-coding
88620	chr16	85615761	85617650	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	3383	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
81559	chr16	9123121	9123500	+	0	NA	Intergenic	L2c|LINE|L2	31666	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
85551	chr16	53373051	53373950	+	0	NA	promoter-TSS (NR_119378)	promoter-TSS (NR_119378)	7	NR_119378	102723373		NR_119378		LOC102723373	-	uncharacterized LOC102723373	ncRNA
170482	chr3	185986351	185986450	+	0	NA	Intergenic	Intergenic	26457	NR_151491	344887		NR_033752	ENSG00000290862	NMRAL2P	NMRAL1P1	NmrA like redox sensor 2, pseudogene	pseudo
3173	chr1	13687451	13687550	+	0	NA	Intergenic	Intergenic	-12688	NM_001135610	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
197173	chr6	61574121	61574250	+	0	NA	promoter-TSS (NM_001190706)	promoter-TSS (NM_001190706)	55	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2 like 9 (pseudogene)	pseudo
13967	chr1	120436251	120436580	+	0	NA	non-coding (NR_102404, exon 6 of 24)	non-coding (NR_102404, exon 6 of 24)	-2306	NR_003242	767846		NR_003242	ENSG00000293296	PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo
202926	chr6	160398851	160399150	+	0	NA	intron (NM_021977, intron 2 of 10)	intron (NM_021977, intron 2 of 10)	50622	NM_021977	6581		NM_021977	ENSG00000146477	SLC22A3	EMT|EMTH|OCT3	solute carrier family 22 member 3	protein-coding
226420	chr9	70531051	70531150	+	0	NA	3' UTR (NM_001007471, exon 25 of 25)	3' UTR (NM_001007471, exon 25 of 25)	-116443	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
146595	chr20	50117401	50117850	+	0	NA	TTS (NM_001162505)	TTS (NM_001162505)	-1668	NM_022442	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
127825	chr2	44943601	44943900	+	0	NA	intron (NM_005413, intron 1 of 1)	CpG	-1872	NR_103786	100506108		NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA
66809	chr14	64732701	64733180	+	0	NA	intron (NM_001308147, intron 12 of 16)	intron (NM_001308147, intron 12 of 16)	28516	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
194875	chr6	34655971	34657100	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-39619	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
158034	chr22	49927651	49928680	+	0	NA	TTS (NM_024324)	TTS (NM_024324)	9531	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
182000	chr5	55232601	55234730	+	0	NA	promoter-TSS (NR_125348)	promoter-TSS (NR_125348)	52	NR_125347	10309		NM_021147	ENSG00000152669	CCNO	CCNU|CILD29|UDG2	cyclin O	protein-coding
194340	chr6	32865571	32866200	+	0	NA	Intergenic	Intergenic	11693	NM_002800	5698		NM_002800	ENSG00000240065	PSMB9	LMP2|PRAAS3|PRAAS6|PSMB6i|RING12|beta1i	proteasome 20S subunit beta 9	protein-coding
188264	chr5	151086271	151086530	+	0	NA	intron (NM_001252390, intron 1 of 17)	intron (NM_001252390, intron 1 of 17)	766	NM_001252391	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
79291	chr16	541271	541430	+	0	NA	intron (NM_005632, intron 3 of 13)	CpG	-1927	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
124123	chr19	55669371	55669750	+	0	NA	exon (NM_001012478, exon 11 of 12)	exon (NM_001012478, exon 11 of 12)	-5635	NM_001321263	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
158301	chr22	50397601	50398230	+	0	NA	intron (NM_001351648, intron 3 of 22)	intron (NM_001351648, intron 3 of 22)	-9527	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
200508	chr6	135651921	135652180	+	0	NA	intron (NR_152842, intron 3 of 5)	L1MCa|LINE|L1	154249	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
45254	chr11	117994071	117994900	+	0	NA	intron (NM_001558, intron 5 of 6)	intron (NM_001558, intron 5 of 6)	8091	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
217897	chr8	37886451	37886950	+	0	NA	intron (NM_025151, intron 1 of 4)	intron (NM_025151, intron 1 of 4)	12797	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
28764	chr10	62036171	62037130	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-12707	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
69616	chr14	97607151	97607530	+	0	NA	Intergenic	Intergenic	79318	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
156772	chr22	41883771	41884350	+	0	NA	intron (NR_103834, intron 11 of 21)	intron (NR_103834, intron 11 of 21)	-16884	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
205616	chr7	22356671	22357130	+	0	NA	exon (NM_012294, exon 1 of 26)	exon (NM_012294, exon 1 of 26)	254	NM_012294	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
148300	chr20	63724971	63725330	+	0	NA	intron (NM_181485, intron 2 of 6)	AluY|SINE|Alu	-10551	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
174647	chr4	40688601	40688800	+	0	NA	Intergenic	Intergenic	-58106	NM_001371114	54502		NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
52574	chr12	56168971	56169130	+	0	NA	intron (NM_003075, intron 24 of 27)	AluSx|SINE|Alu	10691	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
45432	chr11	118407771	118408130	+	0	NA	intron (NR_033759, intron 3 of 3)	AluY|SINE|Alu	6344	NM_006476	10632		NM_006476	ENSG00000167283	ATP5MG	ATP5JG|ATP5L	ATP synthase membrane subunit g	protein-coding
236306	chrX	68498421	68499350	+	0	NA	promoter-TSS (NM_173834)	promoter-TSS (NM_173834)	103	NM_001195214	286451		NM_173834	ENSG00000181704	YIPF6	FinGER6|YIPFalpha3|Yip4	Yip1 domain family member 6	protein-coding
105110	chr17	82204601	82205180	+	0	NA	intron (NM_001367828, intron 1 of 16)	intron (NM_001367828, intron 1 of 16)	7952	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
53780	chr12	68812621	68813300	+	0	NA	intron (NM_002392, intron 2 of 10)	L2c|LINE|L2	3936	NM_001145337	4193		NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|LSKB|hdm2	MDM2 proto-oncogene	protein-coding
73110	chr15	41118771	41118930	+	0	NA	Intergenic	AluY|SINE|Alu	-2570	NM_017553	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
129915	chr2	73283831	73285750	+	0	NA	promoter-TSS (NM_001080410)	promoter-TSS (NM_001080410)	-312	NM_001080410	150726		NM_001080410	ENSG00000163013	FBXO41	FBX41	F-box protein 41	protein-coding
42929	chr11	73401371	73401900	+	0	NA	3' UTR (NM_001286051, exon 6 of 6)	3' UTR (NM_001286051, exon 6 of 6)	24967	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
192520	chr6	25029151	25030050	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	12688	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
60177	chr13	40215201	40215400	+	0	NA	intron (NR_033877, intron 1 of 5)	L4_A_Mam|LINE|RTE-X	5202	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
139365	chr2	221511271	221511450	+	0	NA	intron (NM_004438, intron 3 of 17)	MER57A1|LTR|ERV1	60944	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
186572	chr5	138486521	138486780	+	0	NA	Intergenic	Intergenic	21171	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
7125	chr1	32179151	32180700	+	0	NA	promoter-TSS (NM_001376857)	promoter-TSS (NM_001376857)	-140	NM_001376857	200081		NM_175852	ENSG00000084652	TXLNA	IL-14|IL14|TXLN	taxilin alpha	protein-coding
158978	chr3	10260471	10260830	+	0	NA	exon (NM_014760, exon 3 of 8)	exon (NM_014760, exon 3 of 8)	12191	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
15887	chr1	151535701	151535900	+	0	NA	exon (NM_020770, exon 18 of 21)	exon (NM_020770, exon 18 of 21)	-4509	NM_001126337	7286		NM_020127	ENSG00000143367	TUFT1	WHSF	tuftelin 1	protein-coding
151337	chr21	45618821	45619080	+	0	NA	Intergenic	Intergenic	-24775	NM_001382287	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
8308	chr1	40061401	40062000	+	0	NA	intron (NM_001350483, intron 3 of 12)	intron (NM_001350483, intron 3 of 12)	20674	NM_001350481	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
218090	chr8	38950771	38950930	+	0	NA	exon (NM_021623, exon 6 of 12)	exon (NM_021623, exon 6 of 12)	-23378	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
210318	chr7	99478501	99479030	+	0	NA	intron (NR_147001, intron 3 of 4)	LTR33|LTR|ERVL	5873	NM_001351000	285989		NM_213603	ENSG00000198556	ZNF789	-	zinc finger protein 789	protein-coding
172670	chr4	2732001	2732400	+	0	NA	non-coding (NR_046335, exon 19 of 19)	non-coding (NR_046335, exon 19 of 19)	24136	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
108591	chr18	75213621	75214130	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	3078	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
122592	chr19	49717301	49718400	+	0	NA	Intergenic	LTR50|LTR|ERVL	26354	NM_001378484	126129		NM_152359	ENSG00000169169	CPT1C	CATL1|CPT I-C|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73	carnitine palmitoyltransferase 1C	protein-coding
90938	chr17	2621771	2622130	+	0	NA	intron (NM_000430, intron 1 of 10)	THE1A|LTR|ERVL-MaLR	28296	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
113576	chr19	10265151	10265450	+	0	NA	Intergenic	AluY|SINE|Alu	-5820	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
16051	chr1	152869871	152870050	+	0	NA	Intergenic	Intergenic	-8362	NM_030663	4184		NM_030663	ENSG00000163206	SMCP	HSMCSGEN1|MCS|MCSP	sperm mitochondria associated cysteine rich protein	protein-coding
70186	chr14	100405421	100405680	+	0	NA	intron (NM_001350949, intron 2 of 6)	intron (NM_001350949, intron 2 of 6)	29065	NM_001350947	79446		NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
51018	chr12	49720051	49720480	+	0	NA	Intergenic	Intergenic	-12860	NM_175736	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
134452	chr2	143176551	143177000	+	0	NA	intron (NM_018460, intron 2 of 13)	MLT1G1|LTR|ERVL-MaLR	47356	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
6752	chr1	30729151	30729550	+	0	NA	Intergenic	Intergenic	-5765	NM_002379	4146		NM_002379	ENSG00000162510	MATN1	CMP|CRTM	matrilin 1	protein-coding
50716	chr12	48958871	48959430	+	0	NA	Intergenic	Intergenic	-1663	NM_001659	377		NM_001659	ENSG00000134287	ARF3	-	ADP ribosylation factor 3	protein-coding
48274	chr12	8695751	8696080	+	0	NA	intron (NM_001352267, intron 1 of 5)	AluSp|SINE|Alu	-1268	NM_001352268	57494		NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding
154106	chr22	31087901	31088300	+	0	NA	exon (NM_006932, exon 3 of 20)	exon (NM_006932, exon 3 of 20)	3104	NM_001207018	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
93	chr1	377051	377350	+	0	NA	Intergenic	L1ME1|LINE|L1	74478	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
205134	chr7	7105571	7105730	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-8864	NR_034022	100131257		NR_034022		LOC100131257	-	zinc finger protein 655 pseudogene	pseudo
32785	chr10	104587101	104587500	+	0	NA	Intergenic	Intergenic	-53990	NM_014978	22986		NM_014978	ENSG00000156395	SORCS3	SORCS	sortilin related VPS10 domain containing receptor 3	protein-coding
90289	chr17	1030821	1031080	+	0	NA	intron (NM_001282149, intron 11 of 17).3	intron (NM_001282149, intron 11 of 17).3	881	NM_001256847	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
159242	chr3	12923601	12923800	+	0	NA	intron (NM_014869, intron 4 of 13)	intron (NM_014869, intron 4 of 13)	-38489	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
192377	chr6	24713001	24713300	+	0	NA	intron (NM_030939, intron 3 of 4)	Tigger5b|DNA|TcMar-Tigger	6004	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
87193	chr16	69398201	69398400	+	0	NA	Intergenic	Intergenic	-12293	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
10353	chr1	64932001	64932200	+	0	NA	intron (NM_001321852, intron 1 of 24)	MIRb|SINE|MIR	34449	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
221879	chr8	128537601	128538200	+	0	NA	intron (NR_121672, intron 2 of 7)	MIR|SINE|MIR	26779	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
165856	chr3	105867411	105867670	+	0	NA	promoter-TSS (NM_001321813)	promoter-TSS (NM_001321813)	51	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
61227	chr13	49645351	49645650	+	0	NA	Intergenic	L1MC5a|LINE|L1	16993	NM_138450	115761		NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP ribosylation factor like GTPase 11	protein-coding
71023	chr14	104770351	104770450	+	0	NA	exon (NM_005163, exon 14 of 14)	exon (NM_005163, exon 14 of 14)	17253	NM_006427	10572		NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding
88571	chr16	85558101	85559730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-52494	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
107296	chr18	44757371	44757530	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	56575	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
231489	chr9	131386471	131386700	+	0	NA	intron (NM_001384822, intron 1 of 30)	intron (NM_001384822, intron 1 of 30)	-7501	NM_001384821	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
101487	chr17	67565151	67565250	+	0	NA	intron (NM_181671, intron 4 of 9)	intron (NM_181671, intron 4 of 9)	-93615	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
93374	chr17	18246471	18246630	+	0	NA	intron (NM_001256265, intron 22 of 28).2	intron (NM_001256265, intron 22 of 28).2	12188	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
62550	chr13	99817701	99818680	+	0	NA	intron (NR_120421, intron 1 of 4)	MLT1J1|LTR|ERVL-MaLR	-89189	NR_046525	101927465		NR_046525	ENSG00000234303	CLYBL-AS1	-	CLYBL antisense RNA 1	ncRNA
186465	chr5	137891771	137892000	+	0	NA	intron (NM_001300921, intron 2 of 14)	AluSx|SINE|Alu	2428	NM_014386	27039		NM_014386	ENSG00000078795	PKD2L2	TRPP5	polycystin 2 like 2, transient receptor potential cation channel	protein-coding
95943	chr17	38967101	38967900	+	0	NA	promoter-TSS (NM_001008777)	promoter-TSS (NM_001008777)	-97	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
94038	chr17	27302151	27302650	+	0	NA	intron (NR_145520, intron 2 of 8)	AluSz|SINE|Alu	8286	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
26909	chr10	26454571	26455100	+	0	NA	intron (NM_019043, intron 2 of 14)	L1MA2|LINE|L1	16494	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
219183	chr8	66581501	66581700	+	0	NA	intron (NM_001144755, intron 8 of 14)	AluJo|SINE|Alu	31618	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
47856	chr12	6627551	6628650	+	0	NA	intron (NM_020400, intron 1 of 1)	AluYf1|SINE|Alu	3549	NM_001142961	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
77557	chr15	84785771	84786130	+	0	NA	intron (NM_014630, intron 4 of 10)	intron (NM_014630, intron 4 of 10)	-31406	NM_020778	57538		NM_020778	ENSG00000136383	ALPK3	CMH27|MAK|MIDORI	alpha kinase 3	protein-coding
199253	chr6	111843471	111844280	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	29196	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
84819	chr16	31084221	31084480	+	0	NA	TTS (NM_014699)	TTS (NM_014699)	4459	NM_001039503	339105		NM_001039503	ENSG00000151006	PRSS53	POL3S|UNQ308	serine protease 53	protein-coding
83669	chr16	28364421	28366080	+	0	NA	Intergenic	Intergenic	-2390	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
127547	chr2	42340151	42340800	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	19563	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
164044	chr3	53349201	53349800	+	0	NA	Intergenic	AluSx|SINE|Alu	-1957	NM_001290204	55802		NM_018403	ENSG00000272886	DCP1A	HSA275986|Nbla00360|SMAD4IP1|SMIF	decapping mRNA 1A	protein-coding
238419	chrX	150651671	150651830	+	0	NA	intron (NM_001376907, intron 9 of 13)	intron (NM_001376907, intron 9 of 13)	-41212	NM_001353993	8776		NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
108417	chr18	69942621	69943600	+	0	NA	intron (NM_001303619, intron 1 of 4)	MIRb|SINE|MIR	4763	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
189122	chr5	170631021	170631280	+	0	NA	intron (NM_014592, intron 1 of 7)	intron (NM_014592, intron 1 of 7)	50320	NR_136214	105377716		NR_136214	ENSG00000253591	KCNIP1-AS1	-	KCNIP1 antisense RNA 1	ncRNA
226602	chr9	73159151	73159700	+	0	NA	intron (NM_000700, intron 4 of 12)	intron (NM_000700, intron 4 of 12)	7560	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
67966	chr14	74875771	74877200	+	0	NA	promoter-TSS (NR_169190)	promoter-TSS (NR_169190)	-340	NR_169190	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
209959	chr7	92682271	92682430	+	0	NA	intron (NM_001145306, intron 4 of 7)	intron (NM_001145306, intron 4 of 7)	-91960	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
55334	chr12	103953351	103953650	+	0	NA	intron (NM_001135570, intron 2 of 2)	intron (NM_001135570, intron 2 of 2)	3715	NM_001135570	728568		NM_001135570	ENSG00000204954	UQCC6	BR|BRAWNIN|C12orf73	ubiquinol-cytochrome c reductase complex assembly factor 6	protein-coding
139957	chr2	230869151	230869730	+	0	NA	intron (NM_001012514, intron 1 of 4)	intron (NM_001012514, intron 1 of 4)	4490	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
63284	chr13	113969871	113970850	+	0	NA	intron (NM_001365455, intron 1 of 6)	intron (NM_001365455, intron 1 of 6)	3716	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
147280	chr20	57593051	57593580	+	0	NA	Intergenic	Intergenic	27111	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
164450	chr3	59460251	59460350	+	0	NA	Intergenic	Intergenic	198197	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
110794	chr19	2454271	2455100	+	0	NA	intron (NM_032737, intron 1 of 11)	intron (NM_032737, intron 1 of 11)	2274	NM_032737	84823		NM_032737	ENSG00000176619	LMNB2	EPM9|LAMB2|LMN2|MCPH27	lamin B2	protein-coding
150714	chr21	43730351	43731030	+	0	NA	intron (NM_003681, intron 1 of 10)	AluJr|SINE|Alu	-10796	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
137409	chr2	196266001	196266200	+	0	NA	intron (NM_001348768, intron 17 of 28)	AluJo|SINE|Alu	6076	NR_110225	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
16826	chr1	155633551	155634250	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	23682	NM_018116	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
207407	chr7	44263721	44264180	+	0	NA	intron (NM_172080, intron 2 of 19)	intron (NM_172080, intron 2 of 19)	61644	NM_001293170	816		NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB|CaMKIIbeta|MRD54	calcium/calmodulin dependent protein kinase II beta	protein-coding
140052	chr2	231392971	231393130	+	0	NA	Intergenic	Intergenic	-2660	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
226952	chr9	79686771	79687380	+	0	NA	intron (NR_104239, intron 9 of 20)	L2a|LINE|L2	113898	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
157281	chr22	44172571	44172930	+	0	NA	promoter-TSS (NM_001137605)	promoter-TSS (NM_001137605)	-206	NM_001137605	64098		NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding
139607	chr2	225027201	225027800	+	0	NA	intron (NM_014689, intron 1 of 55)	MSTA|LTR|ERVL-MaLR	14968	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
122747	chr19	50100751	50101430	+	0	NA	promoter-TSS (NR_024214).4	promoter-TSS (NR_024214).4	-79	NR_024228	100169958		NR_024228		SNAR-A8	-	small NF90 (ILF3) associated RNA A8	snRNA
209609	chr7	77679001	77679200	+	0	NA	intron (NR_134251, intron 2 of 3)	AluY|SINE|Alu	17165	NR_134254	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
184285	chr5	96804701	96805250	+	0	NA	intron (NM_001198541, intron 1 of 18)	intron (NM_001198541, intron 1 of 18)	2970	NM_001040458	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
44985	chr11	116931501	116933130	+	0	NA	intron (NM_001366686, intron 3 of 24)	L1MD2|LINE|L1	-94365	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
49639	chr12	28247821	28248080	+	0	NA	intron (NM_001352086, intron 3 of 15)	MER1B|DNA|hAT-Charlie	-57212	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
181133	chr5	37837251	37837630	+	0	NA	intron (NM_000514, intron 1 of 2)	CpG	-1613	NM_001190469	2668		NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
102038	chr17	74863151	74863250	+	0	NA	non-coding (NR_047576, exon 11 of 12)	non-coding (NR_047576, exon 11 of 12)	-2357	NM_001278553	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
83871	chr16	28924051	28926250	+	0	NA	promoter-TSS (NM_024816)	promoter-TSS (NM_024816)	88	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
127792	chr2	44234421	44234880	+	0	NA	TTS (NM_177968)	TTS (NM_177968)	-40830	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
151831	chr22	18422001	18422200	+	0	NA	promoter-TSS (NR_136560)	promoter-TSS (NR_136560)	-144	NR_136560	653203		NR_136560	ENSG00000277870	FAM230A	DGCR15	family with sequence similarity 230 member A	ncRNA
99857	chr17	55718171	55718330	+	0	NA	Intergenic	Intergenic	4614	NM_018286	55273		NM_018286	ENSG00000166292	TMEM100	-	transmembrane protein 100	protein-coding
150613	chr21	43372651	43373700	+	0	NA	Intergenic	Intergenic	-10826	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
110693	chr19	2285821	2286430	+	0	NA	Intergenic	Intergenic	-3950	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
236581	chrX	72942371	72942550	+	0	NA	non-coding (NR_026594, exon 1 of 1).2	non-coding (NR_026594, exon 1 of 1).2	1290	NR_026594	653687		NR_026594		FAM226B	CXorf50B|LINC00246B|NCRNA00246B	family with sequence similarity 226 member B	ncRNA
223899	chr9	334601	334800	+	0	NA	intron (NM_203447, intron 11 of 47)	intron (NM_203447, intron 11 of 47)	61652	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
113988	chr19	10831471	10832230	+	0	NA	TTS (NM_001190716)	TTS (NM_001190716)	2877	NR_106851	102466737		NR_106851	ENSG00000275640	MIR6793	hsa-mir-6793	microRNA 6793	ncRNA
11388	chr1	89666651	89666750	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	33580	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
147001	chr20	53564801	53565200	+	0	NA	intron (NR_110051, intron 3 of 5)	AluY|SINE|Alu	12230	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
172124	chr4	1175751	1176050	+	0	NA	intron (NM_001199021, intron 2 of 7)	intron (NM_001199021, intron 2 of 7)	-2689	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
151516	chr21	46429401	46429800	+	0	NA	intron (NM_006031, intron 35 of 46)	L1MD|LINE|L1	-29291	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
119260	chr19	39510171	39510580	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-4738	NM_182704	348303		NM_182704	ENSG00000186838	SELENOV	SELV	selenoprotein V	protein-coding
47021	chr12	378451	378750	+	0	NA	intron (NM_001042603, intron 3 of 27)	HAL1|LINE|L1	10720	NM_001042603	5927		NM_005056	ENSG00000073614	KDM5A	RBBP-2|RBBP2|RBP2	lysine demethylase 5A	protein-coding
111596	chr19	4093051	4093550	+	0	NA	intron (NM_030662, intron 10 of 10)	AluJo|SINE|Alu	-26401	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
147334	chr20	58196951	58197050	+	0	NA	Intergenic	Intergenic	31653	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
7177	chr1	32261171	32261700	+	0	NA	intron (NM_005356, intron 1 of 12)	AluSg|SINE|Alu	10170	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
58673	chr12	132538201	132538830	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	33109	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
25264	chr10	6088671	6090100	+	0	NA	promoter-TSS (NM_001145547)	promoter-TSS (NM_001145547)	39	NM_001145547	84991		NM_032905	ENSG00000134453	RBM17	SPF45	RNA binding motif protein 17	protein-coding
68330	chr14	77592951	77593050	+	0	NA	intron (NM_004863, intron 2 of 11)	AluSx3|SINE|Alu	23637	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
170995	chr3	194671801	194673100	+	0	NA	promoter-TSS (NM_018385)	promoter-TSS (NM_018385)	-259	NM_018385	55341		NM_018385	ENSG00000041802	LSG1	-	large 60S subunit nuclear export GTPase 1	protein-coding
89705	chr16	89404171	89404400	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-26633	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109052	chr18	79804251	79804600	+	0	NA	Intergenic	Intergenic	-59243	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
48754	chr12	10961271	10961430	+	0	NA	intron (NM_001316893, intron 4 of 4).3	L2|LINE|L2	-22143	NM_023922	50840		NM_023922	ENSG00000212127	TAS2R14	T2R14|TRB1	taste 2 receptor member 14	protein-coding
192871	chr6	27374451	27374550	+	0	NA	promoter-TSS (NM_001322288)	promoter-TSS (NM_001322288)	-135	NM_001322288	346157		NM_001013719	ENSG00000124613	ZNF391	dJ153G14.3	zinc finger protein 391	protein-coding
116339	chr19	17849601	17849850	+	0	NA	Intergenic	AluSz|SINE|Alu	-1743	NM_000215	3718		NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
83178	chr16	23480121	23480380	+	0	NA	intron (NM_015044, intron 10 of 16)	MER5A|DNA|hAT-Charlie	-27061	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
237138	chrX	106966621	106966880	+	0	NA	intron (NM_024657, intron 9 of 16)	L1PA7|LINE|L1	33462	NM_001085354	79710		NM_024657	ENSG00000133131	MORC4	ZCW4|ZCWCC2|dJ75H8.2	MORC family CW-type zinc finger 4	protein-coding
157000	chr22	42512751	42513150	+	0	NA	TTS (NR_027786)	TTS (NR_027786)	6846	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
173413	chr4	8158251	8160280	+	0	NA	promoter-TSS (NM_001130084)	promoter-TSS (NM_001130084)	-452	NM_001130084	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
126059	chr2	25606921	25607200	+	0	NA	intron (NM_001351381, intron 4 of 18)	intron (NM_001351381, intron 4 of 18)	43162	NM_001256308	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
60379	chr13	40940171	40940330	+	0	NA	intron (NM_001370329, intron 9 of 9)	intron (NM_001370329, intron 9 of 9)	-18476	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
11512	chr1	90962621	90963080	+	0	NA	intron (NM_201269, intron 2 of 5)	intron (NM_201269, intron 2 of 5)	58658	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
40085	chr11	62785101	62785530	+	0	NA	intron (NM_006473, intron 9 of 10)	AluSx3|SINE|Alu	-2087	NM_001363601	374395		NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
141830	chr20	402301	402600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5600	NM_001323956	10616		NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RANBP2-type and C3HC4-type zinc finger containing 1	protein-coding
213524	chr7	139080471	139080630	+	0	NA	intron (NM_020119, intron 3 of 12)	FRAM|SINE|Alu	29170	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
12116	chr1	100045471	100045630	+	0	NA	intron (NM_033055, intron 1 of 11)	L1MA3|LINE|L1	7455	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
158586	chr3	4738501	4739230	+	0	NA	intron (NM_002222, intron 40 of 57)	intron (NM_002222, intron 40 of 57)	12725	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
105363	chr17	82646651	82647130	+	0	NA	intron (NM_019613, intron 1 of 9)	intron (NM_019613, intron 1 of 9)	1554	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
215681	chr8	738451	738980	+	0	NA	non-coding (NR_134292, exon 1 of 1)	non-coding (NR_134292, exon 1 of 1)	167	NR_134292	401442		NR_134292	ENSG00000282375	LOC401442	-	uncharacterized LOC401442	ncRNA
45774	chr11	119268671	119269230	+	0	NA	intron (NM_005188, intron 2 of 15)	intron (NM_005188, intron 2 of 15)	44062	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
158807	chr3	9705921	9706230	+	0	NA	intron (NM_153635, intron 6 of 19)	intron (NM_153635, intron 6 of 19)	2242	NM_153635	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
71393	chr14	105520051	105520350	+	0	NA	Intergenic	L1MB8|LINE|L1	-6383	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
125528	chr2	12897271	12897430	+	0	NA	Intergenic	Intergenic	109663	NR_038434	100506474		NR_038434	ENSG00000225649	LOC100506474	-	uncharacterized LOC100506474	ncRNA
188786	chr5	157821921	157822180	+	0	NA	intron (NM_001195556, intron 1 of 11)	THE1A|LTR|ERVL-MaLR	37095	NM_014666	9685		NM_014666	ENSG00000113282	CLINT1	CLINT|ENTH|EPN4|EPNR	clathrin interactor 1	protein-coding
45615	chr11	118908621	118909400	+	0	NA	intron (NR_165445, intron 1 of 6)	intron (NR_165445, intron 1 of 6)	1532	NM_182557	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
73451	chr15	43332001	43332200	+	0	NA	intron (NM_001159280, intron 2 of 11)	L2|LINE|L2	1428	NM_001012969	161823		NM_001012969	ENSG00000168803	ADAL	HsMAPDA	adenosine deaminase like	protein-coding
111568	chr19	4057451	4057900	+	0	NA	intron (NM_015898, intron 1 of 2)	AluSc|SINE|Alu	7854	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
167629	chr3	129594951	129595350	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	11526	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
172999	chr4	4270701	4271530	+	0	NA	intron (NM_017816, intron 8 of 9)	L1MA2|LINE|L1	18906	NM_001145725	55646		NM_017816	ENSG00000145220	LYAR	ZC2HC2|ZLYAR	Ly1 antibody reactive	protein-coding
225984	chr9	41237171	41237700	+	0	NA	Intergenic	CpG	-3600	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
235067	chrX	40160101	40160300	+	0	NA	intron (NM_001123384, intron 1 of 13)	AluY|SINE|Alu	17077	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
169427	chr3	161310601	161311500	+	0	NA	Intergenic	L2b|LINE|L2	61033	NM_001040100	165679		NM_145035	ENSG00000196542	SPTSSB	ADMP|C3orf57|SSSPTB	serine palmitoyltransferase small subunit B	protein-coding
105069	chr17	82091851	82091950	+	0	NA	intron (NM_004104, intron 8 of 42)	intron (NM_004104, intron 8 of 42)	-1760	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
97862	chr17	44988551	44988650	+	0	NA	Intergenic	Intergenic	-20297	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
19230	chr1	172596651	172597150	+	0	NA	intron (NM_001282751, intron 17 of 21)	L1PA5|LINE|L1	-62108	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
26136	chr10	13788921	13789730	+	0	NA	intron (NM_018027, intron 5 of 24)	intron (NM_018027, intron 5 of 24)	-81758	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
197720	chr6	86898151	86898250	+	0	NA	Intergenic	L1PA2|LINE|L1	-39328	NM_000865	3354		NM_000865	ENSG00000168830	HTR1E	5-HT1E	5-hydroxytryptamine receptor 1E	protein-coding
84443	chr16	30408451	30408550	+	0	NA	intron (NM_016643, intron 2 of 2)	L2b|LINE|L2	894	NM_001142305	51333		NM_016643	ENSG00000179965	ZNF771	DSC43	zinc finger protein 771	protein-coding
126353	chr2	27413371	27413800	+	0	NA	Intergenic	AluY|SINE|Alu	-3994	NM_177983	5496		NM_177983	ENSG00000115241	PPM1G	PP2CG|PP2CGAMMA|PPP2CG	protein phosphatase, Mg2+/Mn2+ dependent 1G	protein-coding
18404	chr1	161426801	161427380	+	0	NA	Intergenic	Intergenic	-59214	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
217391	chr8	28316621	28316880	+	0	NA	promoter-TSS (NM_006228)	promoter-TSS (NM_006228)	-518	NM_006228	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
209731	chr7	87156771	87156930	+	0	NA	intron (NM_021145, intron 3 of 19)	intron (NM_021145, intron 3 of 19)	4296	NM_021145	9988		NM_021145	ENSG00000135164	DMTF1	DMP1|DMTF|MRUL|hDMP1	cyclin D binding myb like transcription factor 1	protein-coding
116033	chr19	17182951	17183400	+	0	NA	intron (NM_004145, intron 15 of 39)	AluSx1|SINE|Alu	-32182	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
134920	chr2	151260551	151262230	+	0	NA	intron (NM_198557, intron 1 of 3)	CpG	473	NM_198557	375287		NM_198557	ENSG00000184898	RBM43	C2orf38	RNA binding motif protein 43	protein-coding
55653	chr12	107320901	107322850	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	1287	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
1029	chr1	1872271	1873200	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	18352	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
120448	chr19	44499821	44500950	+	0	NA	5' UTR (NM_013256, exon 1 of 5)	5' UTR (NM_013256, exon 1 of 5)	137	NM_001278508	7733		NM_013256	ENSG00000167384	ZNF180	HHZ168	zinc finger protein 180	protein-coding
14852	chr1	146383021	146383480	+	0	NA	Intergenic	LTR23-int|LTR|ERV1	6443	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
181716	chr5	50671871	50672180	+	0	NA	intron (NM_024615, intron 2 of 25)	L2b|LINE|L2	4611	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
135264	chr2	159744051	159744150	+	0	NA	intron (NR_164789, intron 4 of 8)	AluYa5|SINE|Alu	10136	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
91240	chr17	3944271	3945850	+	0	NA	exon (NM_005173, exon 9 of 21)	exon (NM_005173, exon 9 of 21)	19377	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
177244	chr4	108627401	108627830	+	0	NA	intron (NM_033625, intron 5 of 5)	AluSx|SINE|Alu	6986	NM_001319234	6164		NM_000995	ENSG00000109475	RPL34	L34|eL34	ribosomal protein L34	protein-coding
221846	chr8	128251771	128251930	+	0	NA	Intergenic	Intergenic	101734	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
86185	chr16	57892101	57892300	+	0	NA	intron (NM_001297, intron 31 of 32)	Tigger17a|DNA|TcMar-Tigger	78928	NM_001135639	1258		NM_001297	ENSG00000070729	CNGB1	CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45	cyclic nucleotide gated channel subunit beta 1	protein-coding
118672	chr19	37654671	37656310	+	0	NA	promoter-TSS (NM_001320671)	promoter-TSS (NM_001320671)	-25	NM_001320667	22835		NM_014898	ENSG00000120784	ZFP30	ZNF745	ZFP30 zinc finger protein	protein-coding
175936	chr4	80426521	80426780	+	0	NA	intron (NM_001206997, intron 2 of 6)	MER5A|DNA|hAT-Charlie	90920	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
228758	chr9	110172751	110173500	+	0	NA	TTS (NM_001136562)	TTS (NM_001136562)	35034	NM_001012993	401546		NM_001012993	ENSG00000188959	C9orf152	bA470J20.2	chromosome 9 open reading frame 152	protein-coding
113549	chr19	10230901	10232580	+	0	NA	promoter-TSS (NM_004230)	promoter-TSS (NM_004230)	-409	NM_004230	9294		NM_004230	ENSG00000267534	S1PR2	AGR16|DFNB68|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding
232272	chr9	134422551	134423530	+	0	NA	intron (NM_001291921, intron 5 of 8)	intron (NM_001291921, intron 5 of 8)	16480	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
124770	chr2	7083901	7084130	+	0	NA	Intergenic	L1P4a|LINE|L1	-6135	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
171275	chr3	195875471	195875830	+	0	NA	intron (NM_005781, intron 9 of 14)	intron (NM_005781, intron 9 of 14)	6745	NR_106887	102465977		NR_106887	ENSG00000276489	MIR6829	hsa-mir-6829	microRNA 6829	ncRNA
189297	chr5	172118271	172119230	+	0	NA	intron (NM_005990, intron 3 of 18)	AluSg|SINE|Alu	69474	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
27866	chr10	41847471	41847630	+	0	NA	Intergenic	Intergenic	520495	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
102974	chr17	76719151	76719550	+	0	NA	intron (NM_015167, intron 5 of 5)	AluSz|SINE|Alu	-6691	NM_001378349	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
96132	chr17	39659271	39660630	+	0	NA	intron (NM_001165938, intron 8 of 13)	intron (NM_001165938, intron 8 of 13)	-5399	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
131095	chr2	89827971	89828730	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-190443	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
205962	chr7	26159551	26160230	+	0	NA	intron (NM_004289, intron 1 of 3)	intron (NM_004289, intron 1 of 3)	7692	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
24575	chr1	245051471	245052000	+	0	NA	intron (NM_001290327, intron 3 of 7)	intron (NM_001290327, intron 3 of 7)	-80866	NR_111907	101928068		NR_111907		LOC101928068	-	uncharacterized LOC101928068	ncRNA
70208	chr14	100567001	100568050	+	0	NA	intron (NR_169571, intron 2 of 7)	intron (NR_169571, intron 2 of 7)	776	NM_001385100	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
34729	chr10	133668401	133670650	+	0	NA	Intergenic	CpG	-42730	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
180514	chr5	14399071	14399430	+	0	NA	intron (NR_134469, intron 30 of 56)	intron (NR_134469, intron 30 of 56)	-64733	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
59537	chr13	27258601	27259130	+	0	NA	Intergenic	FRAM|SINE|Alu	3464	NR_002575	619499		NR_002575	ENSG00000207051	SNORA27	ACA27	small nucleolar RNA, H/ACA box 27	snoRNA
165669	chr3	101860151	101860650	+	0	NA	3' UTR (NM_001005474, exon 13 of 13)	3' UTR (NM_001005474, exon 13 of 13)	10886	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
223877	chr9	242451	242750	+	0	NA	intron (NM_203447, intron 1 of 47)	MIRb|SINE|MIR	-26850	NR_160804	157983		NM_152569	ENSG00000183784	DOCK8-AS1	C9orf66	DOCK8 antisense RNA 1	ncRNA
32461	chr10	102643301	102643600	+	0	NA	Intergenic	CpG	-1029	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
23153	chr1	226726571	226727400	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	12190	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
195491	chr6	37158051	37158350	+	0	NA	Intergenic	AluY|SINE|Alu	-11952	NM_001243186	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
15688	chr1	150976321	150976650	+	0	NA	Intergenic	Intergenic	-1482	NM_181746	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
127568	chr2	42565801	42566400	+	0	NA	intron (NM_001282755, intron 2 of 17)	MIR|SINE|MIR	-1945	NM_001282756	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
179561	chr4	185200571	185200750	+	0	NA	intron (NM_020827, intron 1 of 4)	AluJb|SINE|Alu	3340	NM_020827	57587		NM_020827	ENSG00000164323	CFAP97	KIAA1430|hmw	cilia and flagella associated protein 97	protein-coding
226819	chr9	77475301	77475500	+	0	NA	intron (NR_121184, intron 2 of 4)	intron (NR_121184, intron 2 of 4)	27751	NR_121184	101927422		NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
156988	chr22	42502571	42503030	+	0	NA	intron (NR_027786, intron 5 of 10)	intron (NR_027786, intron 5 of 10)	2221	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
148357	chr20	63846051	63846630	+	0	NA	Intergenic	Intergenic	-15076	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
188582	chr5	157154571	157155600	+	0	NA	Intergenic	L1MDa|LINE|L1	11179	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
200621	chr6	136786351	136786650	+	0	NA	TTS (NR_134635)	TTS (NR_134635)	2453	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
52436	chr12	55832901	55833100	+	0	NA	non-coding (NR_036476, exon 4 of 5)	non-coding (NR_036476, exon 4 of 5)	-3364	NM_032364	85406		NM_032364	ENSG00000135392	DNAJC14	DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding
165580	chr3	101570951	101571680	+	0	NA	Intergenic	LTR48B|LTR|ERV1	-2779	NM_001320399	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
221391	chr8	123418701	123419500	+	0	NA	intron (NM_018024, intron 1 of 5)	AluSx1|SINE|Alu	2326	NM_018024	55093		NM_018024	ENSG00000156795	NTAQ1	C8orf32|WDYHV1	N-terminal glutamine amidase 1	protein-coding
174940	chr4	49133151	49133630	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	146748	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
56030	chr12	110431151	110432600	+	0	NA	Intergenic	AluY|SINE|Alu	18462	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
32800	chr10	109852351	109853050	+	0	NA	Intergenic	Intergenic	70546	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
209812	chr7	87932871	87933030	+	0	NA	Intergenic	Intergenic	-1193	NM_004194	53616		NM_004194	ENSG00000008277	ADAM22	ADAM 22|DEE61|EIEE61|MDC2	ADAM metallopeptidase domain 22	protein-coding
94775	chr17	30922071	30923030	+	0	NA	intron (NM_001346716, intron 1 of 10)	CpG	605	NM_018404	55803		NM_018404	ENSG00000184060	ADAP2	CENTA2|HSA272195|cent-b	ArfGAP with dual PH domains 2	protein-coding
153339	chr22	24407301	24407700	+	0	NA	intron (NM_001254732, intron 13 of 14)	intron (NM_001254732, intron 13 of 14)	-16097	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
219458	chr8	73124851	73125350	+	0	NA	Intergenic	Intergenic	-31928	NM_153225	157869		NM_153225	ENSG00000164764	SBSPON	C8orf84|RPESP	somatomedin B and thrombospondin type 1 domain containing	protein-coding
182057	chr5	55935001	55935200	+	0	NA	TTS (NR_120480)	TTS (NR_120480)	59863	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
176493	chr4	91791571	91791730	+	0	NA	Intergenic	L1PA2|LINE|L1	485652	NR_125920	101929194		NR_125920		LNCPRESS2	-	lncRNA p53 regulated and ESC associated 2	ncRNA
60671	chr13	43056501	43056980	+	0	NA	intron (NM_013238, intron 1 of 5)	L1PB1|LINE|L1	33154	NM_013238	29103		NM_013238	ENSG00000120675	DNAJC15	DNAJD1|HSD18|MCJ	DnaJ heat shock protein family (Hsp40) member C15	protein-coding
44059	chr11	95253851	95254830	+	0	NA	Intergenic	Intergenic	-21865	NM_001271594	143686		NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding
107029	chr18	32100771	32101380	+	0	NA	intron (NM_198128, intron 1 of 4)	intron (NM_198128, intron 1 of 4)	8469	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
77231	chr15	81285251	81285700	+	0	NA	intron (NM_172217, intron 9 of 18)	intron (NM_172217, intron 9 of 18)	-11495	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
93864	chr17	21027301	21027500	+	0	NA	intron (NM_015276, intron 2 of 12)	intron (NM_015276, intron 2 of 12)	15611	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
237027	chrX	102713251	102713600	+	0	NA	intron (NR_146586, intron 2 of 6)	intron (NR_146586, intron 2 of 6)	585	NM_001350270	100528062		NM_001199818	ENSG00000286237	ARMCX5-GPRASP2	ARMCX5-GPRASP2-BHLHB9-LINC00630|GPRASP3|bHLHb9|p60TRP	ARMCX5-GPRASP2 readthrough	protein-coding
94614	chr17	29807751	29808400	+	0	NA	intron (NM_033389, intron 1 of 14)	intron (NM_033389, intron 1 of 14)	-46643	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
195760	chr6	40407321	40407780	+	0	NA	intron (NM_020737, intron 2 of 2)	intron (NM_020737, intron 2 of 2)	29213	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
181512	chr5	43030451	43031450	+	0	NA	intron (NR_104651, intron 2 of 2)	intron (NR_104651, intron 2 of 2)	9369	NM_001014279	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
87016	chr16	68258371	68258530	+	0	NA	intron (NM_001363551, intron 5 of 5)	intron (NM_001363551, intron 5 of 5)	-6076	NM_003983	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
212432	chr7	128360421	128360940	+	0	NA	intron (NM_001114726, intron 1 of 5)	intron (NM_001114726, intron 1 of 5)	1005	NM_001174164	401399		NM_001114726	ENSG00000224940	PRRT4	-	proline rich transmembrane protein 4	protein-coding
51634	chr12	53002451	53002750	+	0	NA	Intergenic	AluSc|SINE|Alu	-3856	NM_001300821	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
220208	chr8	96158501	96159050	+	0	NA	intron (NM_001001557, intron 1 of 1)	intron (NM_001001557, intron 1 of 1)	2031	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
217846	chr8	37737501	37738480	+	0	NA	promoter-TSS (NR_125821)	promoter-TSS (NR_125821)	-564	NR_125821	102723701		NR_125821	ENSG00000183154	LOC102723701	-	uncharacterized LOC102723701	ncRNA
137224	chr2	191599671	191600050	+	0	NA	Intergenic	MER41A|LTR|ERV1	-78212	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
76268	chr15	74080771	74081130	+	0	NA	intron (NM_001038640, intron 1 of 17)	intron (NM_001038640, intron 1 of 17)	1600	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
174696	chr4	42399471	42400380	+	0	NA	intron (NM_001080505, intron 1 of 1)	intron (NM_001080505, intron 1 of 1)	2437	NM_001080505	152573		NM_001080505	ENSG00000178343	SHISA3	hShisa3	shisa family member 3	protein-coding
16447	chr1	154578451	154579230	+	0	NA	3' UTR (NM_000748, exon 6 of 6)	3' UTR (NM_000748, exon 6 of 6)	11062	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
195517	chr6	37209171	37210000	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	39433	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
187159	chr5	140560351	140561400	+	0	NA	intron (NM_133173, intron 9 of 11)	intron (NM_133173, intron 9 of 11)	-2782	NR_045586	10011		NM_001035235	ENSG00000213523	SRA1	SRA|SRAP|STRAA1|pp7684	steroid receptor RNA activator 1	protein-coding
233487	chr9	137877571	137878030	+	0	NA	promoter-TSS (NM_001243812)	promoter-TSS (NM_001243812)	18	NM_000718	774		NM_000718	ENSG00000148408	CACNA1B	BIII|CACNL1A5|CACNN|Cav2.2|DYT23|NEDNEH	calcium voltage-gated channel subunit alpha1 B	protein-coding
103489	chr17	78368451	78368750	+	0	NA	intron (NR_110847, intron 3 of 4)	intron (NR_110847, intron 3 of 4)	7598	NR_110846	101928674		NR_110845	ENSG00000266970	SOCS3-DT	-	SOCS3 divergent transcript	ncRNA
207922	chr7	50664451	50665450	+	0	NA	intron (NM_001371008, intron 4 of 15)	intron (NM_001371008, intron 4 of 15)	40351	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
159126	chr3	12629601	12630000	+	0	NA	intron (NM_001354691, intron 1 of 16)	AluJr|SINE|Alu	33708	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
232129	chr9	133994321	133995230	+	0	NA	Intergenic	MIRc|SINE|MIR	-2451	NM_003371	7410		NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
92009	chr17	7454801	7457280	+	0	NA	intron (NM_000747, intron 10 of 10)	AluSx|SINE|Alu	10979	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
102127	chr17	75048921	75049180	+	0	NA	intron (NM_015353, intron 1 of 5)	intron (NM_015353, intron 1 of 5)	1825	NM_015353	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
49331	chr12	21774371	21775130	+	0	NA	promoter-TSS (NM_004982)	promoter-TSS (NM_004982)	-44	NM_004982	3764		NM_004982	ENSG00000121361	KCNJ8	KIR6.1|uKATP-1	potassium inwardly rectifying channel subfamily J member 8	protein-coding
40959	chr11	65350551	65351180	+	0	NA	intron (NM_001330308, intron 11 of 11)	AluSz6|SINE|Alu	-3886	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
186749	chr5	139310601	139311400	+	0	NA	intron (NM_199189, intron 5 of 17)	AluSp|SINE|Alu	17250	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
129103	chr2	65126101	65126500	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSx1|SINE|Alu	3806	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
67282	chr14	69334101	69334500	+	0	NA	intron (NM_020692, intron 9 of 15)	intron (NM_020692, intron 9 of 15)	63999	NM_004450	2079		NM_004450	ENSG00000100632	ERH	DROER	ERH mRNA splicing and mitosis factor	protein-coding
92663	chr17	10728251	10728550	+	0	NA	intron (NM_001359647, intron 1 of 5)	AluSz|SINE|Alu	-1377	NR_073458	101101775		NR_073455	ENSG00000263400	TMEM220-AS1	-	TMEM220 antisense RNA 1	ncRNA
102292	chr17	75336271	75336600	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	-46986	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
128291	chr2	54603001	54603730	+	0	NA	intron (NM_178313, intron 2 of 30)	intron (NM_178313, intron 2 of 30)	44971	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
174668	chr4	41439421	41439500	+	0	NA	intron (NM_001330787, intron 1 of 26)	AluJb|SINE|Alu	78653	NM_014988	22998		NM_014988	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
37751	chr11	31826701	31826900	+	0	NA	non-coding (NR_117094, exon 1 of 1)	non-coding (NR_117094, exon 1 of 1)	233	NR_117094	103157000		NR_117094	ENSG00000281880	PAUPAR	-	PAX6 upstream antisense RNA	ncRNA
156549	chr22	41435651	41436000	+	0	NA	3' UTR (NM_016272, exon 2 of 2)	3' UTR (NM_016272, exon 2 of 2)	10976	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
162638	chr3	48812101	48813100	+	0	NA	intron (NM_004157, intron 1 of 10)	AluY|SINE|Alu	35274	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
95984	chr17	39172851	39173630	+	0	NA	TTS (NM_000723)	TTS (NM_000723)	-7079	NM_001143968	390790		NM_001143968	ENSG00000141748	ARL5C	ARL12	ADP ribosylation factor like GTPase 5C	protein-coding
207044	chr7	39577951	39578050	+	0	NA	intron (NM_001282446, intron 2 of 2)	LTR12C|LTR|ERV1	11596	NM_001282446	57002		NM_020192	ENSG00000241127	YAE1	C7orf36|CIAB2|GK003|YAE1D1	YAE1 maturation factor of ABCE1	protein-coding
38024	chr11	35136271	35136630	+	0	NA	non-coding (NR_120528, exon 2 of 3)	non-coding (NR_120528, exon 2 of 3)	1582	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
232994	chr9	136994871	136995430	+	0	NA	intron (NM_004669, intron 4 of 5)	CpG	1418	NM_004669	9022		NM_004669	ENSG00000169583	CLIC3	-	chloride intracellular channel 3	protein-coding
12475	chr1	107898451	107898550	+	0	NA	intron (NM_006113, intron 1 of 26)	intron (NM_006113, intron 1 of 26)	1277	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
189279	chr5	172086721	172087180	+	0	NA	intron (NM_005990, intron 10 of 18)	intron (NM_005990, intron 10 of 18)	-80312	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
14918	chr1	147423651	147423750	+	0	NA	intron (NR_038423, intron 3 of 3)	L1PA2|LINE|L1	94175	NR_038423	100289211		NR_038423	ENSG00000278811	LINC00624	-	long intergenic non-protein coding RNA 624	ncRNA
45930	chr11	121025071	121025230	+	0	NA	intron (NM_001378761, intron 1 of 29)	intron (NM_001378761, intron 1 of 29)	1048	NM_001378761	116804918		NM_001378761		TBCEL-TECTA	-	TBCEL-TECTA readthrough	protein-coding
230125	chr9	127718771	127719480	+	0	NA	intron (NM_144965, intron 4 of 13)	AluSg|SINE|Alu	3046	NM_144965	158248		NM_144965	ENSG00000167094	TTC16	-	tetratricopeptide repeat domain 16	protein-coding
12323	chr1	100971051	100971150	+	0	NA	intron (NM_133496, intron 10 of 10)	intron (NM_133496, intron 10 of 10)	54684	NM_001077395	51611		NM_015958	ENSG00000117543	DPH5	AD-018|CGI-30|HSPC143|NEDSFF|NPD015	diphthamide biosynthesis 5	protein-coding
59948	chr13	31208351	31208650	+	0	NA	intron (NM_194318, intron 1 of 14)	intron (NM_194318, intron 1 of 14)	8525	NM_194318	145173		NM_194318	ENSG00000187676	B3GLCT	B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	beta 3-glucosyltransferase	protein-coding
201075	chr6	142767301	142767580	+	0	NA	intron (NM_006734, intron 6 of 9)	intron (NM_006734, intron 6 of 9)	-129551	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
127596	chr2	42828671	42829200	+	0	NA	Intergenic	MIRb|SINE|MIR	-36352	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
238820	chrX	154427321	154427730	+	0	NA	intron (NR_103768, intron 1 of 1)	intron (NR_103768, intron 1 of 1)	954	NR_103768	158960		NR_103768	ENSG00000197180	ATP6AP1-DT	CH17-340M24.3	ATP6AP1 divergent transcript	ncRNA
8673	chr1	41900151	41900250	+	0	NA	intron (NR_038260, intron 1 of 2)	MIRb|SINE|MIR	18722	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
7217	chr1	32309951	32310250	+	0	NA	intron (NM_004964, intron 2 of 13)	MER102b|DNA|hAT-Charlie	18017	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
146826	chr20	51403601	51403800	+	0	NA	intron (NM_012340, intron 9 of 10)	MLT1A|LTR|ERVL-MaLR	49277	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
36559	chr11	6627321	6628000	+	0	NA	exon (NM_003737, exon 14 of 21)	exon (NM_003737, exon 14 of 21)	-8238	NM_000391	1200		NM_000391	ENSG00000166340	TPP1	CLN2|GIG1|LPIC|SCAR7|TPP-1	tripeptidyl peptidase 1	protein-coding
75693	chr15	67837671	67838030	+	0	NA	intron (NR_120345, intron 1 of 2)	MIR|SINE|MIR	1029	NR_120345	101929076		NR_120345	ENSG00000245719	SKOR1-AS1	-	SKOR1 antisense RNA 1	ncRNA
41315	chr11	65890171	65891500	+	0	NA	exon (NM_006848, exon 1 of 1)	exon (NM_006848, exon 1 of 1)	162	NM_006848	11007		NM_006848	ENSG00000175602	CCDC85B	DIPA	coiled-coil domain containing 85B	protein-coding
172977	chr4	4032651	4033450	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-77622	NR_130740	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
151712	chr22	17630001	17630630	+	0	NA	Intergenic	AluSg|SINE|Alu	-1493	NM_001039367	529		NM_001696	ENSG00000131100	ATP6V1E1	ARCL2C|ATP6E|ATP6E2|ATP6V1E|P31|Vma4	ATPase H+ transporting V1 subunit E1	protein-coding
89133	chr16	88510971	88511130	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	20003	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
111792	chr19	4447501	4447730	+	0	NA	exon (NM_001171091, exon 6 of 11)	exon (NM_001171091, exon 6 of 11)	1637	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
132144	chr2	101728551	101728850	+	0	NA	intron (NM_001384572, intron 1 of 29)	AluSz|SINE|Alu	30435	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
60520	chr13	41389571	41389930	+	0	NA	Intergenic	Intergenic	-52814	NR_002163	100506759		NR_002163		OR7E37P	OR7E48P|OST193|hg533	olfactory receptor family 7 subfamily E member 37 pseudogene	pseudo
48046	chr12	6968521	6969150	+	0	NA	intron (NM_001144831, intron 3 of 8)	intron (NM_001144831, intron 3 of 8)	-1229	NR_003010	677777		NR_003010	ENSG00000238795	SCARNA12	U89	small Cajal body-specific RNA 12	ncRNA
141054	chr2	238251871	238252330	+	0	NA	intron (NM_022817, intron 19 of 22)	intron (NM_022817, intron 19 of 22)	-12062	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
169902	chr3	177641371	177641630	+	0	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-175365	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
53805	chr12	69246851	69247150	+	0	NA	intron (NM_001300947, intron 1 of 10)	intron (NM_001300947, intron 1 of 10)	7431	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
53491	chr12	66286121	66286580	+	0	NA	Intergenic	L2a|LINE|L2	-16143	NM_001370285	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
74407	chr15	58975401	58976000	+	0	NA	Intergenic	Intergenic	-11963	NM_001270528	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
107323	chr18	45384471	45384650	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	122476	NR_110899	101927980		NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
10018	chr1	55218801	55219250	+	0	NA	intron (NR_146283, intron 1 of 1)	AluSx1|SINE|Alu	1164	NR_146283	109729135		NR_146283	ENSG00000231090	MIR4422HG	-	MIR4422 host gene	ncRNA
11716	chr1	91874021	91874580	+	0	NA	intron (NM_001195684, intron 2 of 17)	L2a|LINE|L2	11851	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
144984	chr20	37345751	37346850	+	0	NA	intron (NM_198291, intron 1 of 13)	CpG	160	NM_198291	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
153033	chr22	23248471	23249700	+	0	NA	intron (NM_021574, intron 1 of 21)	AluJr|SINE|Alu	-13682	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
161191	chr3	39140321	39140680	+	0	NA	Intergenic	Intergenic	2294	NR_106880	102466743		NR_106880	ENSG00000284158	MIR6822	hsa-mir-6822	microRNA 6822	ncRNA
237249	chrX	110167901	110168200	+	0	NA	intron (NM_001353849, intron 5 of 7)	intron (NM_001353849, intron 5 of 7)	57010	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
183263	chr5	76434301	76434500	+	0	NA	intron (NM_006633, intron 1 of 35)	L1PB3|LINE|L1	31115	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
85237	chr16	48246771	48246930	+	0	NA	intron (NM_031490, intron 1 of 14)	AluJo|SINE|Alu	689	NM_001370497	85320		NM_032583	ENSG00000121270	ABCC11	EWWD|MRP8|WW	ATP binding cassette subfamily C member 11	protein-coding
59771	chr13	30150551	30150650	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	2474	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
169652	chr3	171458901	171459700	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	1105	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
51353	chr12	51590601	51592180	+	0	NA	intron (NM_001330260, intron 1 of 26)	CpG	154	NM_001177984	6334		NM_014191	ENSG00000196876	SCN8A	BFIS5|CERIII|CIAT|DEE13|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4	sodium voltage-gated channel alpha subunit 8	protein-coding
158782	chr3	9426121	9426780	+	0	NA	intron (NM_001349451, intron 2 of 25)	AluSz|SINE|Alu	28835	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
107247	chr18	38939951	38940050	+	0	NA	Intergenic	Intergenic	682175	NR_030628	100126323		NR_030628	ENSG00000283615	MIR924	MIRN924|hsa-mir-924	microRNA 924	ncRNA
151441	chr21	46146351	46146650	+	0	NA	intron (NM_206965, intron 7 of 13)	intron (NM_206965, intron 7 of 13)	-4875	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
27376	chr10	30848701	30848900	+	0	NA	exon (NM_001143766, exon 7 of 8)	exon (NM_001143766, exon 7 of 8)	125581	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
6581	chr1	28755001	28755480	+	0	NA	intron (NM_016258, intron 4 of 4)	L2c|LINE|L2	18300	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
78145	chr15	90400221	90401400	+	0	NA	intron (NM_003870, intron 2 of 37)	Tigger19b|DNA|TcMar-Tigger	12568	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
104743	chr17	81674071	81674950	+	0	NA	TTS (NM_199287)	TTS (NM_199287)	7773	NM_199287	339230		NM_199287	ENSG00000185298	CCDC137	RaRF	coiled-coil domain containing 137	protein-coding
163171	chr3	50175001	50175600	+	0	NA	intron (NM_004186, intron 6 of 18)	intron (NM_004186, intron 6 of 18)	16281	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
50388	chr12	47269121	47269380	+	0	NA	Intergenic	Intergenic	38149	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
186776	chr5	139343601	139343900	+	0	NA	intron (NM_001033112, intron 1 of 3)	AluSc8|SINE|Alu	1316	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
43163	chr11	75345251	75345550	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	6261	NM_004041	408		NM_004041	ENSG00000137486	ARRB1	ARB1|ARR1	arrestin beta 1	protein-coding
26225	chr10	14584471	14585200	+	0	NA	intron (NM_001282695, intron 2 of 5)	MER51A|LTR|ERV1	-12460	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
157057	chr22	42585471	42586280	+	0	NA	exon (NM_178136, exon 8 of 8)	exon (NM_178136, exon 8 of 8)	-3864	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
22380	chr1	218344921	218345250	+	0	NA	promoter-TSS (NM_001135599)	promoter-TSS (NM_001135599)	-199	NR_138148	7042		NM_003238	ENSG00000092969	TGFB2	G-TSF|LDS4|TGF-beta2	transforming growth factor beta 2	protein-coding
122796	chr19	50356721	50358300	+	0	NA	TTS (NM_004851)	TTS (NM_004851)	8129	NM_004851	9476		NM_004851	ENSG00000131400	NAPSA	KAP|Kdap|NAP1|NAPA|SNAPA	napsin A aspartic peptidase	protein-coding
35012	chr11	544801	545230	+	0	NA	intron (NM_198075, intron 6 of 13)	intron (NM_198075, intron 6 of 13)	7488	NM_198075	115399		NM_198075	ENSG00000161328	LRRC56	CILD39|DNAAF12|oda8	leucine rich repeat containing 56	protein-coding
223908	chr9	459601	460300	+	0	NA	intron (NM_203447, intron 46 of 47)	MLT1H1|LTR|ERVL-MaLR	-10341	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
136554	chr2	177413801	177414200	+	0	NA	intron (NM_003659, intron 1 of 19)	intron (NM_003659, intron 1 of 19)	21227	NM_003659	8540		NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3	alkylglycerone phosphate synthase	protein-coding
106961	chr18	31681201	31681530	+	0	NA	intron (NM_001378109, intron 1 of 8)	intron (NM_001378109, intron 1 of 8)	3216	NM_004775	9331		NM_004775	ENSG00000118276	B4GALT6	B4Gal-T6|beta4Gal-T6	beta-1,4-galactosyltransferase 6	protein-coding
31185	chr10	91196071	91196880	+	0	NA	intron (NM_001257101, intron 1 of 9)	L2a|LINE|L2	-23676	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
59251	chr13	23979371	23980730	+	0	NA	intron (NR_104595, intron 1 of 4)	intron (NR_104595, intron 1 of 4)	248	NR_104595	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
113772	chr19	10538351	10538650	+	0	NA	Intergenic	AluJo|SINE|Alu	-5404	NR_104025	84971		NM_032885	ENSG00000130734	ATG4D	APG4-D|APG4D|AUTL4|HsAPG4D	autophagy related 4D cysteine peptidase	protein-coding
192093	chr6	16690051	16690830	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	69744	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
169535	chr3	170161201	170161600	+	0	NA	intron (NM_001308116, intron 4 of 14)	MER1B|DNA|hAT-Charlie	20333	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
217879	chr8	37858271	37858630	+	0	NA	TTS (NM_001002814)	TTS (NM_001002814)	-8589	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
190395	chr5	179799871	179800230	+	0	NA	exon (NM_054013, exon 7 of 14)	exon (NM_054013, exon 7 of 14)	-1704	NR_031598	100302156		NR_031598	ENSG00000221394	MIR1229	MIRN1229|hsa-mir-1229	microRNA 1229	ncRNA
50512	chr12	47822271	47823250	+	0	NA	Intergenic	Intergenic	-2857	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
24069	chr1	235315801	235316100	+	0	NA	intron (NM_016374, intron 2 of 23)	FLAM_C|SINE|Alu	-11266	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
141440	chr2	241011871	241013280	+	0	NA	intron (NM_001080437, intron 1 of 31)	L1M5|LINE|L1	13957	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
184474	chr5	100818201	100818600	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-1835	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
223658	chr8	144369521	144369850	+	0	NA	intron (NR_134307, intron 1 of 1)	LTR27B|LTR|ERV1	3186	NR_134307	101928902		NR_134307		LOC101928902	-	uncharacterized LOC101928902	ncRNA
72088	chr15	28914471	28914630	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	-7087	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
37271	chr11	14672521	14672880	+	0	NA	intron (NM_001363569, intron 1 of 15)	MLT1J|LTR|ERVL-MaLR	28896	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
2468	chr1	9656571	9657100	+	0	NA	intron (NM_005026, intron 1 of 23)	AluSx|SINE|Alu	-2249	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
120467	chr19	44723751	44724600	+	0	NA	Intergenic	Intergenic	-24533	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
13749	chr1	116942271	116942630	+	0	NA	intron (NM_020440, intron 2 of 8)	MIR|SINE|MIR	32534	NM_020440	5738		NM_020440	ENSG00000134247	PTGFRN	CD315|CD9P-1|EWI-F|FPRP|SMAP-6	prostaglandin F2 receptor inhibitor	protein-coding
139650	chr2	226795771	226796200	+	0	NA	exon (NM_005544, exon 1 of 2)	exon (NM_005544, exon 1 of 2)	3835	NM_005544	3667		NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
125739	chr2	20665751	20666250	+	0	NA	Intergenic	CpG	-1144	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
97372	chr17	43317671	43318880	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-18044	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
203095	chr6	166411501	166412250	+	0	NA	3' UTR (NM_001006932, exon 22 of 22)	3' UTR (NM_001006932, exon 22 of 22)	-28935	NR_164831	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
239156	chrY	11333911	11334200	+	0	NA	Intergenic	LSAU|Satellite|Satellite	1087535	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
19954	chr1	184856821	184857080	+	0	NA	intron (NM_052966, intron 5 of 13)	intron (NM_052966, intron 5 of 13)	-102092	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
116682	chr19	18412621	18413900	+	0	NA	Intergenic	AluSx|SINE|Alu	-6138	NM_001009998	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
176215	chr4	84493751	84493850	+	0	NA	intron (NM_006168, intron 2 of 2)	intron (NM_006168, intron 2 of 2)	5492	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
73047	chr15	40885621	40885880	+	0	NA	Intergenic	AluSq2|SINE|Alu	-8700	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
152159	chr22	20022871	20023280	+	0	NA	intron (NM_001322172, intron 1 of 7)	intron (NM_001322172, intron 1 of 7)	1965	NM_152906	128989		NM_152906	ENSG00000183597	TANGO2	C22orf25|MECRCN	transport and golgi organization 2 homolog	protein-coding
104644	chr17	81454801	81455000	+	0	NA	intron (NM_001377448, intron 14 of 27)	intron (NM_001377448, intron 14 of 27)	-3712	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
63243	chr13	113937451	113937750	+	0	NA	Intergenic	MER4A1_|LTR|ERV1	-8609	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
229061	chr9	114345821	114346080	+	0	NA	exon (NM_001317950, exon 18 of 22)	exon (NM_001317950, exon 18 of 22)	16081	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
47699	chr12	6430171	6431200	+	0	NA	Intergenic	L1ME3G|LINE|L1	-14270	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
97901	chr17	45120351	45121130	+	0	NA	intron (NM_133373, intron 3 of 14)	intron (NM_133373, intron 3 of 14)	-6307	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
235048	chrX	40104771	40105800	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG-29594	-7327	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
111547	chr19	4038471	4039380	+	0	NA	3' UTR (NM_015897, exon 11 of 11)	3' UTR (NM_015897, exon 11 of 11)	26604	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
139900	chr2	230716701	230717050	+	0	NA	intron (NM_001130849, intron 1 of 8)	AluJo|SINE|Alu	3327	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
58505	chr12	132172821	132173780	+	0	NA	Intergenic	Intergenic	16395	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
1844	chr1	6290201	6291230	+	0	NA	intron (NM_007274, intron 7 of 8)	intron (NM_007274, intron 7 of 8)	-29617	NM_207370	387509		NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
143515	chr20	31539951	31540450	+	0	NA	3' UTR (NM_178582, exon 3 of 3)	3' UTR (NM_178582, exon 3 of 3)	25758	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
106855	chr18	24055051	24055680	+	0	NA	intron (NM_001135993, intron 1 of 13)	L1MB3|LINE|L1	-39905	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
183686	chr5	80703801	80704000	+	0	NA	intron (NM_002439, intron 8 of 23)	L1M4|LINE|L1	-48917	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
164407	chr3	58488951	58489330	+	0	NA	Intergenic	Intergenic	-2956	NM_001128214	200845		NM_153331	ENSG00000168301	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
207450	chr7	44576701	44576900	+	0	NA	Intergenic	AluSx|SINE|Alu	-2262	NM_019082	54606		NM_019082	ENSG00000136271	DDX56	DDX21|DDX26|NOH61	DEAD-box helicase 56	protein-coding
20969	chr1	202566051	202566150	+	0	NA	intron (NM_032103, intron 9 of 11)	intron (NM_032103, intron 9 of 11)	25986	NM_001197131	4660		NM_002481	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1 regulatory subunit 12B	protein-coding
221436	chr8	124013451	124013750	+	0	NA	non-coding (NR_040044, exon 4 of 6)	non-coding (NR_040044, exon 4 of 6)	27182	NR_040044	439941		NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
237276	chrX	111100071	111100500	+	0	NA	intron (NR_136740, intron 2 of 2)	intron (NR_136740, intron 2 of 2)	-2874	NR_136748	5063		NM_002578	ENSG00000077264	PAK3	ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|XLID30|bPAK|beta-PAK	p21 (RAC1) activated kinase 3	protein-coding
148965	chr21	13823851	13823950	+	0	NA	Intergenic	Intergenic	24464	NR_026755	54055		NR_026755	ENSG00000290541	CYP4F29P	4F-se4[6:7:8]|C21orf15|CYP4F-se4[6:7:8]|CYP4F3LP	cytochrome P450 family 4 subfamily F member 29, pseudogene	pseudo
115753	chr19	16319251	16320200	+	0	NA	Intergenic	L2c|LINE|L2	-5101	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
26672	chr10	22618401	22619380	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	95218	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
150155	chr21	38807821	38808300	+	0	NA	intron (NM_005239, intron 1 of 9)	intron (NM_005239, intron 1 of 9)	2131	NM_005239	2114		NM_005239	ENSG00000157557	ETS2	ETS2IT1	ETS proto-oncogene 2, transcription factor	protein-coding
57597	chr12	122425051	122425150	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2431	NM_198240	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
135582	chr2	165951651	165951750	+	0	NA	intron (NM_024753, intron 1 of 28)	L2a|LINE|L2	2076	NM_024753	79809		NM_024753	ENSG00000123607	TTC21B	ATD4|CFAP60|FAP60|FLA17|IFT139|IFT139B|JBTS11|NPHP12|Nbla10696|SRTD4|THM1	tetratricopeptide repeat domain 21B	protein-coding
105228	chr17	82370871	82372230	+	0	NA	promoter-TSS (NM_001381897)	promoter-TSS (NM_001381897)	-215	NM_018949	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
79766	chr16	1364451	1364550	+	0	NA	TTS (NM_032520)	TTS (NM_032520)	12569	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
60869	chr13	46031701	46031900	+	0	NA	intron (NM_001382214, intron 1 of 15)	L1MCa|LINE|L1	20946	NM_001382208	23091		NM_015070	ENSG00000123200	ZC3H13	KIAA0853|Xio	zinc finger CCCH-type containing 13	protein-coding
125865	chr2	24511851	24512230	+	0	NA	intron (NM_001362954, intron 1 of 23)	intron (NM_001362954, intron 1 of 23)	20163	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
196864	chr6	49461521	49461780	+	0	NA	intron (NM_000255, intron 1 of 12)	AluSx|SINE|Alu	1603	NM_000255	4594		NM_000255	ENSG00000146085	MMUT	MCM|MUT	methylmalonyl-CoA mutase	protein-coding
195336	chr6	36620771	36620930	+	0	NA	Intergenic	Intergenic	1662	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
83361	chr16	25068421	25068830	+	0	NA	non-coding (NR_135196, exon 2 of 2)	non-coding (NR_135196, exon 2 of 2)	1738	NR_135197	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
111825	chr19	4511421	4512000	+	0	NA	exon (NM_001367868, exon 5 of 8)	exon (NM_001367868, exon 5 of 8)	6776	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
41233	chr11	65719921	65721130	+	0	NA	TTS (NM_001206833)	TTS (NM_001206833)	273	NM_032193	84153		NM_032193	ENSG00000172922	RNASEH2C	AGS3|AYP1	ribonuclease H2 subunit C	protein-coding
98564	chr17	47706311	47707630	+	0	NA	intron (NM_014726, intron 6 of 8)	intron (NM_014726, intron 6 of 8)	11706	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
42205	chr11	68014651	68014950	+	0	NA	intron (NM_001030010, intron 1 of 8)	intron (NM_001030010, intron 1 of 8)	4473	NM_001290058	221		NM_000694	ENSG00000006534	ALDH3B1	ALDH4|ALDH7	aldehyde dehydrogenase 3 family member B1	protein-coding
180963	chr5	35707621	35707880	+	0	NA	intron (NM_024867, intron 18 of 36)	L2a|LINE|L2	89887	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
175705	chr4	77145701	77146550	+	0	NA	Intergenic	Intergenic	-11082	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
3213	chr1	13762301	13762500	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	12985	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
178414	chr4	147730151	147730500	+	0	NA	Intergenic	Intergenic	-1763	NM_024605	79658		NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
24603	chr1	246450951	246451050	+	0	NA	intron (NM_001167740, intron 1 of 11)	intron (NM_001167740, intron 1 of 11)	-33588	NM_022743	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
96676	chr17	40942251	40942450	+	0	NA	Intergenic	(CTC)n|Simple_repeat|Simple_repeat	-4704	NM_015515	25984		NM_015515	ENSG00000108244	KRT23	CK23|HAIK1|K23	keratin 23	protein-coding
172808	chr4	3021171	3021600	+	0	NA	intron (NM_182982, intron 9 of 15)	intron (NM_182982, intron 9 of 15)	53129	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
88737	chr16	86319521	86319780	+	0	NA	Intergenic	Intergenic	26029	NR_024406	732275		NR_024406	ENSG00000168367	LINC00917	-	long intergenic non-protein coding RNA 917	ncRNA
89880	chr16	89648901	89649430	+	0	NA	intron (NM_002768, intron 4 of 6)	(CCACC)n|Simple_repeat|Simple_repeat	8543	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
17290	chr1	156437071	156437350	+	0	NA	Intergenic	Intergenic	-7662	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
218523	chr8	53775801	53776100	+	0	NA	intron (NM_213620, intron 9 of 13)	LTR12C|LTR|ERV1	67092	NM_213620	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
122768	chr19	50138751	50139500	+	0	NA	TTS (NR_024230).2	TTS (NR_024230).2	112	NR_024230	100170217		NR_024230		SNAR-B2	-	small NF90 (ILF3) associated RNA B2	snRNA
223371	chr8	143879851	143880900	+	0	NA	Intergenic	Intergenic	-1908	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238571	chrX	153823271	153823430	+	0	NA	intron (NM_032512, intron 1 of 7)	AluSp|SINE|Alu	6609	NM_001303516	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
189246	chr5	172003671	172003830	+	0	NA	intron (NM_001378978, intron 1 of 13)	intron (NM_001378978, intron 1 of 13)	2888	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
125601	chr2	17752201	17752400	+	0	NA	intron (NM_024624, intron 1 of 26)	MER2|DNA|TcMar-Tigger	1510	NM_001142286	79677		NM_024624	ENSG00000163029	SMC6	SMC-6|SMC6L1|hSMC6	structural maintenance of chromosomes 6	protein-coding
115654	chr19	16128301	16128600	+	0	NA	intron (NM_005370, intron 6 of 7)	intron (NM_005370, intron 6 of 7)	-5578	NR_111904	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
99658	chr17	50715821	50716280	+	0	NA	Intergenic	AluJo|SINE|Alu	-3515	NM_006107	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
90547	chr17	1498671	1498830	+	0	NA	intron (NM_016532, intron 7 of 11)	AluJr|SINE|Alu	-6064	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
184102	chr5	93721151	93721330	+	0	NA	intron (NR_028080, intron 8 of 8)	intron (NR_028080, intron 8 of 8)	20360	NM_153216	134187		NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
199889	chr6	127832071	127832230	+	0	NA	intron (NM_001010923, intron 2 of 5).2	intron (NM_001010923, intron 2 of 5).2	23038	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
148851	chr21	8416141	8416720	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	-16100	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
156576	chr22	41501121	41501530	+	0	NA	intron (NM_001098, intron 2 of 17)	MIRc|SINE|MIR	32208	NM_001098	50		NM_001098	ENSG00000100412	ACO2	ACONM|HEL-S-284|ICRD|OCA8|OPA9	aconitase 2	protein-coding
158850	chr3	9815571	9816280	+	0	NA	intron (NM_001366051, intron 4 of 12)	MER91A|DNA|hAT-Tip100	5663	NR_037162	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
84484	chr16	30484551	30484850	+	0	NA	intron (NM_002209, intron 9 of 30)	AluSx|SINE|Alu	11958	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
2591	chr1	9849701	9850700	+	0	NA	3' UTR (NM_001012329, exon 5 of 5)	3' UTR (NM_001012329, exon 5 of 5)	-25674	NM_014944	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
171484	chr3	196522421	196522970	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-7349	NM_001077657	255798		NM_001077657	ENSG00000214097	SMCO1	C3orf43	single-pass membrane protein with coiled-coil domains 1	protein-coding
38394	chr11	44911101	44911730	+	0	NA	intron (NM_130783, intron 5 of 9)	MamRep564|Unknown|Unknown	38745	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
17265	chr1	156388171	156388850	+	0	NA	Intergenic	CpG	19299	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
25497	chr10	7046151	7047050	+	0	NA	Intergenic	Intergenic	140184	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
204629	chr7	5394671	5394850	+	0	NA	intron (NM_001080495, intron 2 of 29)	intron (NM_001080495, intron 2 of 29)	28786	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
221897	chr8	128599351	128599700	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-34846	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
94255	chr17	28689321	28689780	+	0	NA	exon (NM_001320755, exon 26 of 38)	exon (NM_001320755, exon 26 of 38)	20554	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
134627	chr2	144416571	144416730	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-83581	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
115904	chr19	16596201	16596730	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-24050	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
192399	chr6	24816901	24817380	+	0	NA	intron (NM_014722, intron 21 of 22)	L1HS|LINE|L1	-18223	NM_001282492	101928603		NM_001282492	ENSG00000260286	ARMH2	C6orf229	armadillo like helical domain containing 2	protein-coding
125951	chr2	25211371	25211530	+	0	NA	Intergenic	AluJb|SINE|Alu	7137	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
30682	chr10	80516071	80516630	+	0	NA	intron (NM_001128309, intron 5 of 5)	intron (NM_001128309, intron 5 of 5)	19592	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
12093	chr1	99821801	99822000	+	0	NA	Intergenic	L2c|LINE|L2	-28461	NM_000642	178		NM_000028	ENSG00000162688	AGL	GDE	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein-coding
5129	chr1	24889101	24889550	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	30091	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
120838	chr19	45510351	45510650	+	0	NA	intron (NM_003370, intron 1 of 12)	AluSq2|SINE|Alu	3021	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
104258	chr17	80758751	80759680	+	0	NA	intron (NM_020761, intron 6 of 33)	intron (NM_020761, intron 6 of 33)	46417	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
160718	chr3	32426051	32426750	+	0	NA	intron (NM_138410, intron 1 of 4)	L1ME4a|LINE|L1	34547	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
123047	chr19	51311621	51312080	+	0	NA	promoter-TSS (NM_001101372)	promoter-TSS (NM_001101372)	2	NM_001101372	402665		NM_001101372	ENSG00000142549	IGLON5	-	IgLON family member 5	protein-coding
23213	chr1	227564971	227565380	+	0	NA	intron (NM_001367911, intron 1 of 2)	AluSc|SINE|Alu	1619	NM_001367911	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
134771	chr2	147356101	147356380	+	0	NA	Intergenic	Intergenic	-488277	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
208270	chr7	65768671	65768830	+	0	NA	intron (NR_038378, intron 1 of 7)	MIRb|SINE|MIR	2060	NR_038378	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
114723	chr19	13172321	13173450	+	0	NA	Intergenic	Intergenic	22474	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
197971	chr6	90000621	90000950	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	106316	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
677	chr1	1380271	1380430	+	0	NA	Intergenic	Intergenic	-5143	NM_001127230	54998		NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38|mS38	aurora kinase A interacting protein 1	protein-coding
105002	chr17	82025051	82025350	+	0	NA	intron (NM_144999, intron 4 of 16)	intron (NM_144999, intron 4 of 16)	1895	NM_144999	201255		NM_144999	ENSG00000169683	LRRC45	-	leucine rich repeat containing 45	protein-coding
103738	chr17	78885321	78885780	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	17651	NM_001243540	100653515		NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
17805	chr1	159822651	159822950	+	0	NA	Intergenic	Intergenic	-4073	NM_001330741	56833		NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
17491	chr1	156724051	156724680	+	0	NA	intron (NM_001370150, intron 2 of 3)	intron (NM_001370150, intron 2 of 3)	4074	NM_001303095	81875		NM_030980	ENSG00000143319	ISG20L2	HSD38	interferon stimulated exonuclease gene 20 like 2	protein-coding
84767	chr16	30983251	30983550	+	0	NA	intron (NM_014712, intron 17 of 18)	intron (NM_014712, intron 17 of 18)	-1807	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
174818	chr4	48135871	48136430	+	0	NA	3' UTR (NM_003215, exon 18 of 18)	3' UTR (NM_003215, exon 18 of 18)	-1900	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
51514	chr12	52192171	52192400	+	0	NA	promoter-TSS (NM_001081492)	promoter-TSS (NM_001081492)	-271	NM_182507	144501		NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding
182112	chr5	56072401	56072600	+	0	NA	Intergenic	AluSx1|SINE|Alu	77333	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
39249	chr11	57702401	57702880	+	0	NA	Intergenic	AluSx1|SINE|Alu	9575	NR_157587	219541		NM_153450	ENSG00000156603	MED19	DT2P1G7|LCMR1|MED19AS	mediator complex subunit 19	protein-coding
10703	chr1	75375771	75376400	+	0	NA	intron (NM_001320283, intron 1 of 21)	L1PA2|LINE|L1	235029	NM_001320287	204962		NM_152697	ENSG00000137968	SLC44A5	CTL5	solute carrier family 44 member 5	protein-coding
86643	chr16	67447501	67448100	+	0	NA	intron (NM_004691, intron 2 of 7)	intron (NM_004691, intron 2 of 7)	16679	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
205909	chr7	25260771	25261450	+	0	NA	Intergenic	Intergenic	-32624	NM_022150	64111		NM_022150	ENSG00000105954	NPVF	C7orf9|RFRP	neuropeptide VF precursor	protein-coding
135907	chr2	171415971	171416330	+	0	NA	intron (NM_001321157, intron 1 of 10)	intron (NM_001321157, intron 1 of 10)	17840	NM_001321155	79828		NM_024770	ENSG00000123600	METTL8	TIP	methyltransferase 8, tRNA N3-cytidine	protein-coding
114624	chr19	12982171	12982530	+	0	NA	Intergenic	AluSz6|SINE|Alu	12732	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
233435	chr9	137614601	137615250	+	0	NA	TTS (NR_122036)	TTS (NR_122036)	3604	NR_122036	85026		NM_032937	ENSG00000203993	ARRDC1-AS1	C9orf37	ARRDC1 antisense RNA 1	ncRNA
60209	chr13	40485171	40486780	+	0	NA	Intergenic	Intergenic	-4969	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
15332	chr1	149903901	149904330	+	0	NA	3' UTR (NM_001328674, exon 13 of 13)	3' UTR (NM_001328674, exon 13 of 13)	2876	NM_001278719	9900		NM_014849	ENSG00000159164	SV2A	DEE113|SLC22B1|SV2	synaptic vesicle glycoprotein 2A	protein-coding
117076	chr19	19067651	19067950	+	0	NA	intron (NM_178526, intron 1 of 7)	intron (NM_178526, intron 1 of 7)	3806	NM_178526	284439		NM_178526	ENSG00000181035	SLC25A42	MECREN	solute carrier family 25 member 42	protein-coding
2584	chr1	9826771	9827280	+	0	NA	Intergenic	Intergenic	-2499	NM_014944	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
64870	chr14	35301201	35302250	+	0	NA	intron (NM_001282232, intron 1 of 6)	intron (NM_001282232, intron 1 of 6)	9343	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
42890	chr11	73363771	73364130	+	0	NA	intron (NM_014786, intron 16 of 20)	MIR3|SINE|MIR	-12449	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
94534	chr17	29575651	29576200	+	0	NA	intron (NM_001085454, intron 16 of 20)	intron (NM_001085454, intron 16 of 20)	7224	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
190672	chr5	181261701	181263300	+	0	NA	intron (NR_102762, intron 1 of 2)	intron (NR_102762, intron 1 of 2)	1288	NR_102760	100507602		NR_102759	ENSG00000248275	TRIM52-AS1	-	TRIM52 antisense RNA 1 (head to head)	ncRNA
135657	chr2	168433751	168433850	+	0	NA	Intergenic	MIRb|SINE|MIR	-22472	NM_203463	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
205659	chr7	22853451	22855150	+	0	NA	promoter-TSS (NR_146320)	promoter-TSS (NR_146320)	60	NR_146320	109729180		NR_146320	ENSG00000228649	SNHG26	-	small nucleolar RNA host gene 26	ncRNA
223244	chr8	143626451	143626550	+	0	NA	Intergenic	AluYe5|SINE|Alu	-8951	NM_001317783	7264		NM_003313	ENSG00000104522	GFUS	FX|P35B|SDR4E1|TSTA3	GDP-L-fucose synthase	protein-coding
67596	chr14	72451351	72452850	+	0	NA	intron (NM_001370288, intron 3 of 16)	intron (NM_001370288, intron 3 of 16)	-64720	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
124921	chr2	8525501	8525700	+	0	NA	Intergenic	Intergenic	58192	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
63794	chr14	21306671	21306830	+	0	NA	intron (NM_020366, intron 6 of 24)	AluSc|SINE|Alu	-10803	NM_001377950	57096		NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	RPGR interacting protein 1	protein-coding
69474	chr14	95319071	95320200	+	0	NA	intron (NM_024734, intron 1 of 12)	CpG	273	NM_024734	79789		NM_024734	ENSG00000165959	CLMN	-	calmin	protein-coding
44580	chr11	108244571	108244930	+	0	NA	intron (NM_000051, intron 6 of 62)	intron (NM_000051, intron 6 of 62)	21221	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
101527	chr17	67855101	67855300	+	0	NA	intron (NM_182641, intron 2 of 27)	AluSx|SINE|Alu	29697	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
42865	chr11	73290551	73291030	+	0	NA	intron (NM_001277207, intron 2 of 2)	intron (NM_001277207, intron 2 of 2)	-17486	NM_014786	9828		NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor 17	protein-coding
179114	chr4	168836671	168836830	+	0	NA	intron (NM_001367568, intron 1 of 11)	Tigger16b|DNA|TcMar-Tigger	4655	NM_001367570	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
231529	chr9	131429251	131429880	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	35479	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
40453	chr11	64212301	64212700	+	0	NA	intron (NM_001382363, intron 5 of 13)	L2|LINE|L2	4794	NM_001382364	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
115248	chr19	14526001	14526450	+	0	NA	intron (NM_001313964, intron 2 of 3)	intron (NM_001313964, intron 2 of 3)	3097	NM_001313964	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
170522	chr3	186569921	186571350	+	0	NA	promoter-TSS (NM_016306)	promoter-TSS (NM_016306)	-85	NR_165643	51726		NM_016306	ENSG00000090520	DNAJB11	ABBP-2|ABBP2|DJ9|Dj-9|EDJ|ERdj3|ERj3|ERj3p|PKD6|PRO1080|UNQ537	DnaJ heat shock protein family (Hsp40) member B11	protein-coding
36080	chr11	2993821	2994480	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1821	NM_001369375	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
107874	chr18	55534501	55534700	+	0	NA	intron (NM_001369569, intron 3 of 19)	intron (NM_001369569, intron 3 of 19)	-23828	NM_001348211	6925		NM_003199	ENSG00000196628	TCF4	CDG2T|E2-2|FCD2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
73934	chr15	51094501	51094900	+	0	NA	5' UTR (NM_001311175, exon 1 of 2)	intron (NM_207381, intron 1 of 2)	206	NM_001311175	388121		NM_207381	ENSG00000183578	TNFAIP8L3	TIPE3	TNF alpha induced protein 8 like 3	protein-coding
162417	chr3	48299851	48300570	+	0	NA	intron (NM_001308435, intron 1 of 3)	L2|LINE|L2	1201	NM_001308433	10201		NM_005793	ENSG00000172113	NME6	IPIA-ALPHA|NDK 6|NM23-H6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding
209662	chr7	78020651	78020830	+	0	NA	intron (NM_012301, intron 21 of 21)	intron (NM_012301, intron 21 of 21)	180610	NM_001127359	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
143386	chr20	28897601	28898000	+	0	NA	Intergenic	(CCATT)n|Simple_repeat|Simple_repeat	-182590	NR_132316	102723316		NR_132316		FRG1DP	-	FSHD region gene 1 family member D, pseudogene	pseudo
229783	chr9	125234621	125235800	+	0	NA	3' UTR (NM_005347, exon 8 of 8)	3' UTR (NM_005347, exon 8 of 8)	6133	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
226580	chr9	72841651	72841950	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	32309	NR_121180	101927258		NR_121120	ENSG00000236849	LINC01474	-	long intergenic non-protein coding RNA 1474	ncRNA
130746	chr2	86804401	86804930	+	0	NA	intron (NR_168478, intron 1 of 7)	AluJo|SINE|Alu	3377	NR_168479	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
116557	chr19	18226871	18227030	+	0	NA	promoter-TSS (NM_001369701)	promoter-TSS (NM_001369701)	-512	NM_001369701	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
70667	chr14	103074171	103074330	+	0	NA	Intergenic	Intergenic	-9960	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
179636	chr4	186193271	186193600	+	0	NA	intron (NM_207352, intron 1 of 10)	intron (NM_207352, intron 1 of 10)	1868	NM_207352	285440		NM_207352	ENSG00000145476	CYP4V2	BCD|CYP4AH1	cytochrome P450 family 4 subfamily V member 2	protein-coding
137462	chr2	197041321	197041580	+	0	NA	intron (NM_001195144, intron 16 of 27)	intron (NM_001195144, intron 16 of 27)	-114743	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
175442	chr4	71186001	71188450	+	0	NA	promoter-TSS (NM_001098484)	promoter-TSS (NM_001098484)	-34	NM_001098484	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
50415	chr12	47382451	47382550	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-18231	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
37470	chr11	18330571	18331450	+	0	NA	intron (NM_001142307, intron 2 of 15)	intron (NM_001142307, intron 2 of 15)	8443	NM_005316	2965		NM_005316	ENSG00000110768	GTF2H1	BTF2|P62|TFB1|TFIIH	general transcription factor IIH subunit 1	protein-coding
165819	chr3	105826851	105827150	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	40591	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
101845	chr17	74007921	74008380	+	0	NA	Intergenic	AluSz6|SINE|Alu	-179613	NR_027146	283982		NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
32486	chr10	102673871	102675250	+	0	NA	3' UTR (NM_004311, exon 6 of 6)	3' UTR (NM_004311, exon 6 of 6)	30065	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
6594	chr1	28765871	28766230	+	0	NA	intron (NM_016258, intron 4 of 4)	L1MC4|LINE|L1	29110	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
198794	chr6	108942751	108943850	+	0	NA	intron (NM_001286609, intron 11 of 16)	intron (NM_001286609, intron 11 of 16)	-19197	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
101370	chr17	67244171	67245600	+	0	NA	non-coding (NR_136398, exon 1 of 4)	non-coding (NR_136398, exon 1 of 4)	109	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
24970	chr10	3056771	3057130	+	0	NA	intron (NR_160681, intron 2 of 3)	intron (NR_160681, intron 2 of 3)	9983	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
226669	chr9	75023371	75023530	+	0	NA	intron (NM_152420, intron 1 of 7)	intron (NM_152420, intron 1 of 7)	3701	NM_001320497	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
78644	chr15	94270001	94270200	+	0	NA	intron (NR_169532, intron 1 of 23)	MER20|DNA|hAT-Charlie	38539	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
156451	chr22	41245851	41247000	+	0	NA	3' UTR (NM_001317930, exon 16 of 16)	3' UTR (NM_001317930, exon 16 of 16)	-5494	NM_138481	150356		NM_138481	ENSG00000100399	CHADL	SLRR4B	chondroadherin like	protein-coding
1078	chr1	1924421	1924800	+	0	NA	intron (NM_001304360, intron 33 of 38)	intron (NM_001304360, intron 33 of 38)	-5331	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
229684	chr9	124621501	124622300	+	0	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	-36536	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
59450	chr13	25902921	25904030	+	0	NA	intron (NM_016529, intron 33 of 36)	L2a|LINE|L2	148541	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
97523	chr17	44000601	44001200	+	0	NA	intron (NM_004160, intron 1 of 6)	intron (NM_004160, intron 1 of 6)	3545	NM_004160	5697		NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
123229	chr19	52922871	52923900	+	0	NA	promoter-TSS (NM_001384656)	promoter-TSS (NM_001384656)	43	NM_001384652	388559		NM_001310127	ENSG00000213793	ZNF888	-	zinc finger protein 888	protein-coding
192480	chr6	24948101	24948300	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-12240	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
28039	chr10	43250221	43250680	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	16615	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
208543	chr7	70693701	70695100	+	0	NA	intron (NM_015570, intron 5 of 18)	CpG	-437744	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
96889	chr17	42112151	42114150	+	0	NA	promoter-TSS (NM_024119)	promoter-TSS (NM_024119)	-436	NM_024119	79132		NM_024119	ENSG00000108771	DHX58	D11LGP2|D11lgp2e|LGP2|RLR-3	DExH-box helicase 58	protein-coding
188878	chr5	159453121	159453580	+	0	NA	intron (NR_027110, intron 5 of 6)	MLT1O|LTR|ERVL-MaLR	12926	NR_027110	285627		NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
131544	chr2	96743021	96743280	+	0	NA	Intergenic	L2b|LINE|L2	-3058	NM_001322352	81562		NM_030805	ENSG00000114988	LMAN2L	MRD69|MRT52|VIPL	lectin, mannose binding 2 like	protein-coding
227413	chr9	89579821	89580530	+	0	NA	Intergenic	L2|LINE|L2	-24837	NM_006705	10912		NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
197308	chr6	72617421	72617950	+	0	NA	Intergenic	MIR|SINE|MIR	-4379	NM_001160132	56479		NM_019842	ENSG00000185760	KCNQ5	Kv7.5|MRD46	potassium voltage-gated channel subfamily Q member 5	protein-coding
18897	chr1	168335501	168335800	+	0	NA	Intergenic	MER34B-int|LTR|ERV1	-39874	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
70378	chr14	101910971	101911330	+	0	NA	intron (NM_178587, intron 11 of 11)	AluY|SINE|Alu	-53423	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
177899	chr4	129009351	129009550	+	0	NA	intron (NM_144643, intron 5 of 20)	AluY|SINE|Alu	84089	NM_144643	132320		NM_144643	ENSG00000151466	SCLT1	CAP-1A|CAP1A	sodium channel and clathrin linker 1	protein-coding
31684	chr10	97463571	97464330	+	0	NA	exon (NM_022362, exon 19 of 31)	exon (NM_022362, exon 19 of 31)	17775	NM_198046	84287		NM_032327	ENSG00000171307	ZDHHC16	APH2|DHHC-16	zinc finger DHHC-type palmitoyltransferase 16	protein-coding
219981	chr8	89826171	89826330	+	0	NA	Intergenic	Intergenic	68434	NM_003821	8767		NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor interacting serine/threonine kinase 2	protein-coding
198693	chr6	108114251	108114430	+	0	NA	Intergenic	Intergenic	-9293	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
54854	chr12	95476951	95477250	+	0	NA	intron (NM_001317183, intron 2 of 9)	intron (NM_001317183, intron 2 of 9)	2948	NM_001317183	10988		NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
91057	chr17	2996821	2997080	+	0	NA	intron (NM_001100398, intron 12 of 23)	intron (NM_001100398, intron 12 of 23)	-31055	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
214649	chr7	150756371	150756530	+	0	NA	Intergenic	Intergenic	19102	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
52078	chr12	54046971	54048250	+	0	NA	intron (NM_014620, intron 1 of 3)	CpG	-6225	NM_153633	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
238456	chrX	152923571	152923930	+	0	NA	intron (NM_001178107, intron 11 of 22)	MER1B|DNA|hAT-Charlie	5885	NM_001178113	7739		NM_007150	ENSG00000147394	ZNF185	SCELL	zinc finger protein 185 with LIM domain	protein-coding
58402	chr12	131905671	131906200	+	0	NA	intron (NM_003565, intron 3 of 27)	intron (NM_003565, intron 3 of 27)	11313	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
162591	chr3	48685321	48686980	+	0	NA	promoter-TSS (NM_016453)	promoter-TSS (NM_016453)	-235	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
20070	chr1	186082271	186082530	+	0	NA	intron (NM_031935, intron 56 of 106)	MLT1H|LTR|ERVL-MaLR	-213873	NM_001127709	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
137575	chr2	197261601	197262950	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	40244	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
146450	chr20	49685101	49685500	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	28578	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
209916	chr7	92423601	92423930	+	0	NA	intron (NR_145992, intron 5 of 9)	(TG)n|Simple_repeat|Simple_repeat	13549	NR_145992	105375396		NM_001317905	ENSG00000293397	TMBIM7P	-	transmembrane BAX inhibitor motif containing 7, pseudogene	pseudo
157112	chr22	42640401	42640600	+	0	NA	5' UTR (NM_001165877, exon 1 of 1)	5' UTR (NM_001165877, exon 1 of 1)	101	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
210641	chr7	100469071	100470130	+	0	NA	intron (NM_001303043, intron 3 of 4)	intron (NM_001303043, intron 3 of 4)	-5340	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
117192	chr19	19367851	19368530	+	0	NA	Intergenic	Intergenic	-17653	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
59818	chr13	30410171	30410330	+	0	NA	Intergenic	Intergenic	11994	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
169587	chr3	170867171	170867750	+	0	NA	intron (NR_135259, intron 3 of 3)	L2c|LINE|L2	2735	NR_135259	200916		NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22 like 1	protein-coding
53290	chr12	64406351	64406650	+	0	NA	intron (NM_007235, intron 1 of 24)	AluSp|SINE|Alu	2108	NM_007235	11260		NM_007235	ENSG00000184575	XPOT	XPO3	exportin for tRNA	protein-coding
181931	chr5	54895551	54896030	+	0	NA	Intergenic	AluJr4|SINE|Alu	89803	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
199767	chr6	125904771	125905550	+	0	NA	intron (NM_001199620, intron 12 of 17)	intron (NM_001199620, intron 12 of 17)	-14095	NM_001199622	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
125615	chr2	18927851	18928150	+	0	NA	Intergenic	Intergenic	98971	NR_135287	400945		NR_135287	ENSG00000236204	LINC01376	-	long intergenic non-protein coding RNA 1376	ncRNA
14848	chr1	146376071	146377500	+	0	NA	promoter-TSS (NR_004400).6	promoter-TSS (NR_004400).6	-22	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
7271	chr1	32369401	32370150	+	0	NA	intron (NR_125352, intron 9 of 11)	L2a|LINE|L2	7236	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
5218	chr1	24984471	24984630	+	0	NA	Intergenic	Intergenic	-19540	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
167460	chr3	129102571	129103380	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	18829	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
196614	chr6	44251371	44251600	+	0	NA	exon (NM_001271971, exon 8 of 12)	exon (NM_001271971, exon 8 of 12)	2800	NR_039790	100616124		NR_039790	ENSG00000284427	MIR4647	mir-4647	microRNA 4647	ncRNA
146044	chr20	47353971	47354330	+	0	NA	non-coding (NR_134501, exon 2 of 2)	non-coding (NR_134501, exon 2 of 2)	1589	NR_134501	101927377		NR_134501	ENSG00000231119	LOC101927377	-	uncharacterized LOC101927377	ncRNA
83386	chr16	26600921	26601400	+	0	NA	Intergenic	Intergenic	-465767	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
148728	chr21	7097901	7098300	+	0	NA	Intergenic	Intergenic	33674	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
212997	chr7	130998021	130998580	+	0	NA	intron (NR_109855, intron 2 of 4)	AluSc|SINE|Alu	84836	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
132775	chr2	109856771	109857130	+	0	NA	3' UTR (NM_005054, exon 23 of 23).2	3' UTR (NM_005054, exon 23 of 23).2	-41482	NR_027145	100271835		NR_027144	ENSG00000284337	LIMS3-LOC440895	-	LIMS3-LOC440895 readthrough	ncRNA
117049	chr19	18940121	18940380	+	0	NA	promoter-TSS (NR_134912)	promoter-TSS (NR_134912)	-4	NR_134913	102724360		NR_134912		HOMER3-AS1	-	HOMER3 antisense RNA 1	ncRNA
37609	chr11	20112421	20112680	+	0	NA	intron (NM_145117, intron 36 of 37)	intron (NM_145117, intron 36 of 37)	47925	NM_001029865	120237		NM_001029865	ENSG00000109851	DBX1	HLX1	developing brain homeobox 1	protein-coding
220944	chr8	108890371	108890530	+	0	NA	Intergenic	Intergenic	-102856	NM_153015	157753		NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
59111	chr13	21180471	21180930	+	0	NA	Intergenic	AluJb|SINE|Alu	4042	NM_024026	78988		NM_024026	ENSG00000173141	MRPL57	MRP63|bMRP63|mL63	mitochondrial ribosomal protein L57	protein-coding
79781	chr16	1377501	1378280	+	0	NA	intron (NM_001372107, intron 10 of 14)	intron (NM_001372107, intron 10 of 14)	1762	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
53265	chr12	63668251	63669330	+	0	NA	promoter-TSS (NM_173812)	promoter-TSS (NM_173812)	-297	NM_173812	283417		NM_173812	ENSG00000177990	DPY19L2	SPATA34|SPGF9	dpy-19 like 2	protein-coding
167791	chr3	133479421	133479680	+	0	NA	intron (NR_135276, intron 1 of 4)	Charlie5|DNA|hAT-Charlie	11596	NR_135277	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
33627	chr10	119652301	119652890	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	1215	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
12572	chr1	108744801	108745530	+	0	NA	Intergenic	AluJr|SINE|Alu	-1509	NM_007269	6814		NM_007269	ENSG00000116266	STXBP3	MUNC18-3|MUNC18C|PSP|UNC-18C	syntaxin binding protein 3	protein-coding
128403	chr2	55223021	55224380	+	0	NA	intron (NM_001353787, intron 1 of 9)	CpG	-8203	NM_001135592	6233		NM_002954	ENSG00000143947	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80|eS31	ribosomal protein S27a	protein-coding
11176	chr1	87325951	87326900	+	0	NA	Intergenic	Intergenic	-2455	NM_006769	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
125488	chr2	12499801	12500000	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-216972	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
14141	chr1	121016871	121017030	+	0	NA	intron (NR_135813, intron 2 of 2)	intron (NR_135813, intron 2 of 2)	35217	NR_135813	101929798		NR_135813	ENSG00000290904	PDE4DIPP4	CH17-118O6.3	PDE4DIP pseudogene 4	pseudo
122925	chr19	50664521	50664980	+	0	NA	intron (NM_016148, intron 23 of 23)	intron (NM_016148, intron 23 of 23)	15305	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
196713	chr6	44976771	44977930	+	0	NA	intron (NM_001350327, intron 5 of 9)	MIRc|SINE|MIR	220420	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
207826	chr7	50324871	50325030	+	0	NA	intron (NM_006060, intron 2 of 7)	intron (NM_006060, intron 2 of 7)	5902	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
199510	chr6	118700151	118700650	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	9675	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
103390	chr17	78159401	78159800	+	0	NA	intron (NM_001163075, intron 2 of 4)	intron (NM_001163075, intron 2 of 4)	-8945	NM_001320523	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
50632	chr12	48710851	48711350	+	0	NA	intron (NM_001240, intron 2 of 8)	AluSx1|SINE|Alu	5607	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
135878	chr2	171081651	171082150	+	0	NA	intron (NM_012290, intron 3 of 20)	intron (NM_012290, intron 3 of 20)	-14927	NM_001136555	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
120194	chr19	42277451	42277550	+	0	NA	intron (NM_001379480, intron 2 of 20)	AluSx|SINE|Alu	-6969	NM_001379484	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
168038	chr3	136912671	136912830	+	0	NA	intron (NM_001291999, intron 1 of 3)	AluJo|SINE|Alu	-17752	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
13597	chr1	116369151	116369450	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3944	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
151559	chr21	46556971	46557130	+	0	NA	exon (NM_015151, exon 30 of 38)	exon (NM_015151, exon 30 of 38)	48032	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
89406	chr16	88826301	88826700	+	0	NA	intron (NM_000512, intron 10 of 13)	intron (NM_000512, intron 10 of 13)	-14572	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
79992	chr16	1823621	1824100	+	0	NA	intron (NM_001286249, intron 1 of 7)	intron (NM_001286249, intron 1 of 7)	2965	NM_005326	3029		NM_005326	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
183700	chr5	80957801	80958950	+	0	NA	intron (NR_105015, intron 1 of 3)	intron (NR_105015, intron 1 of 3)	-1988	NM_006909	5924		NM_006909	ENSG00000113319	RASGRF2	GRF2|RAS-GRF2	Ras protein specific guanine nucleotide releasing factor 2	protein-coding
112147	chr19	5618771	5618930	+	0	NA	intron (NM_014649, intron 2 of 20)	intron (NM_014649, intron 2 of 20)	3926	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
79823	chr16	1426051	1426950	+	0	NA	Intergenic	Intergenic	-4578	NM_001365310	105371045		NM_001365310	ENSG00000284395	PERCC1	DIAR11|ICR|gs104	proline and glutamate rich with coiled coil 1	protein-coding
41488	chr11	66242121	66242530	+	0	NA	intron (NM_018026, intron 22 of 23)	intron (NM_018026, intron 22 of 23)	-14969	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
202478	chr6	158241071	158241800	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-71030	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
217942	chr8	38134371	38134530	+	0	NA	intron (NM_001261832, intron 13 of 14)	intron (NM_001261832, intron 13 of 14)	16502	NM_000349	6770		NM_000349	ENSG00000147465	STAR	STARD1	steroidogenic acute regulatory protein	protein-coding
23335	chr1	228106251	228106900	+	0	NA	TTS (NM_181464)	TTS (NM_181464)	2724	NM_181463	128308		NM_181441	ENSG00000162910	MRPL55	AAVG5835|L55nt|MRP-L55|PRO19675|bL31m	mitochondrial ribosomal protein L55	protein-coding
22855	chr1	225469521	225469780	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-40795	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
10226	chr1	62782171	62782530	+	0	NA	Intergenic	Intergenic	-1756	NM_178221	84938		NM_032852	ENSG00000125703	ATG4C	APG4-C|APG4C|AUTL1|AUTL3|HsAPG4C	autophagy related 4C cysteine peptidase	protein-coding
126016	chr2	25332901	25333100	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	-4279	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
175711	chr4	77160621	77161080	+	0	NA	exon (NM_004354, exon 4 of 8)	exon (NM_004354, exon 4 of 8)	3643	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
168974	chr3	152396501	152396700	+	0	NA	intron (NM_001314057, intron 3 of 11)	intron (NM_001314057, intron 3 of 11)	-55610	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
120929	chr19	45665221	45665480	+	0	NA	Intergenic	AluY|SINE|Alu	-2871	NM_001308418	2696		NM_000164	ENSG00000010310	GIPR	PGQTL2	gastric inhibitory polypeptide receptor	protein-coding
191218	chr6	5671071	5671630	+	0	NA	intron (NR_110842, intron 2 of 3)	intron (NR_110842, intron 2 of 3)	23922	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
217024	chr8	23223821	23226230	+	0	NA	promoter-TSS (NM_003844)	promoter-TSS (NM_003844)	77	NM_003844	8797		NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
57749	chr12	122963601	122964000	+	0	NA	intron (NM_203444, intron 1 of 11)	intron (NM_203444, intron 1 of 11)	2663	NM_001243014	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
20463	chr1	198598801	198599650	+	0	NA	Intergenic	Intergenic	-39743	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
51135	chr12	50114101	50115680	+	0	NA	intron (NM_001257134, intron 1 of 1)	AluSc|SINE|Alu	2654	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
153500	chr22	26489101	26489300	+	0	NA	intron (NM_001013694, intron 4 of 6)	intron (NM_001013694, intron 4 of 6)	5323	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
214676	chr7	150958751	150959050	+	0	NA	intron (NM_172056, intron 3 of 8)	intron (NM_172056, intron 3 of 8)	-3071	NM_172057	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
218158	chr8	41928651	41928950	+	0	NA	TTS (NM_006766)	TTS (NM_006766)	-32059	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
52103	chr12	54159051	54159550	+	0	NA	Intergenic	Intergenic	29657	NM_001351257	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
48304	chr12	8993301	8993500	+	0	NA	intron (NR_137426, intron 2 of 3)	AluSx3|SINE|Alu	3775	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
176201	chr4	83561471	83561630	+	0	NA	intron (NM_001256421, intron 3 of 12)	intron (NM_001256421, intron 3 of 12)	25442	NM_032717	84803		NM_032717	ENSG00000138678	GPAT3	AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1	glycerol-3-phosphate acyltransferase 3	protein-coding
76808	chr15	77036121	77036780	+	0	NA	intron (NR_135552, intron 11 of 11)	intron (NR_135552, intron 11 of 11)	34659	NM_005724	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
62955	chr13	112281401	112281830	+	0	NA	Intergenic	Intergenic	-8615	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
114170	chr19	11372701	11373550	+	0	NA	Intergenic	AluY|SINE|Alu	-1541	NM_175871	126074		NM_175871	ENSG00000173928	SWSAP1	C19orf39|SWS1AP1|ZSWIM7AP1	SWIM-type zinc finger 7 associated protein 1	protein-coding
69732	chr14	98548171	98548530	+	0	NA	Intergenic	Intergenic	-163263	NR_161367	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
89355	chr16	88768471	88768830	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	16570	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
195203	chr6	36116651	36116750	+	0	NA	Intergenic	Intergenic	-13813	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
30338	chr10	77386951	77387050	+	0	NA	intron (NM_001271518, intron 1 of 27)	intron (NM_001271518, intron 1 of 27)	36128	NR_126365	101929286		NR_126365		KCNMA1-AS3	-	KCNMA1 antisense RNA 3	ncRNA
198288	chr6	99905571	99905730	+	0	NA	Intergenic	Intergenic	-88388	NR_038384	728012		NR_038384	ENSG00000229315	MCHR2-AS1	-	MCHR2 antisense RNA 1	ncRNA
87228	chr16	69571521	69571780	+	0	NA	intron (NM_138713, intron 2 of 14)	intron (NM_138713, intron 2 of 14)	5684	NM_173215	10725		NM_006599	ENSG00000102908	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T cells 5	protein-coding
181759	chr5	50721121	50721380	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	53836	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
143501	chr20	31484121	31484380	+	0	NA	exon (NM_014012, exon 5 of 5)	exon (NM_014012, exon 5 of 5)	-1528	NR_024358	140875		NR_024358	ENSG00000233354	LINC00028	C20orf93|NCRNA00028|dJ1093G12.6	long intergenic non-protein coding RNA 28	ncRNA
76101	chr15	72498551	72499180	+	0	NA	intron (NM_005744, intron 1 of 13)	L1M5|LINE|L1	24535	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
227295	chr9	89408301	89409280	+	0	NA	intron (NM_001371201, intron 2 of 18)	intron (NM_001371201, intron 2 of 18)	71100	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
196136	chr6	42418751	42419050	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	33151	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
188907	chr5	160119101	160120450	+	0	NA	promoter-TSS (NM_001130864)	promoter-TSS (NM_001130864)	-325	NM_001349732	114825		NM_052927	ENSG00000170234	PWWP2A	MST101	PWWP domain containing 2A	protein-coding
80310	chr16	2272521	2272780	+	0	NA	TTS (NR_030636)	TTS (NR_030636)	903	NR_030636	100126328		NR_030636	ENSG00000284346	MIR940	MIRN940|hsa-mir-940|mir-940	microRNA 940	ncRNA
176080	chr4	82887721	82888080	+	0	NA	intron (NM_001077206, intron 1 of 25)	AluYc|SINE|Alu	3253	NM_001077207	22872		NM_014933	ENSG00000138674	SEC31A	ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1	SEC31 homolog A, COPII coat complex component	protein-coding
90799	chr17	2212371	2212850	+	0	NA	intron (NM_001256827, intron 3 of 11)	intron (NM_001256827, intron 3 of 11)	-20068	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
32295	chr10	102135851	102136250	+	0	NA	intron (NM_015062, intron 1 of 13)	intron (NM_015062, intron 1 of 13)	3010	NM_015062	23082		NM_015062	ENSG00000148840	PPRC1	PRC	PPARG related coactivator 1	protein-coding
220022	chr8	90647521	90648080	+	0	NA	Intergenic	L2c|LINE|L2	-1717	NM_001008495	169200		NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
158426	chr22	50548001	50550000	+	0	NA	exon (NM_138433, exon 1 of 1)	exon (NM_138433, exon 1 of 1)	3101	NM_138433	113730		NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
56541	chr12	116821921	116822180	+	0	NA	intron (NM_001382266, intron 7 of 10)	AluSx|SINE|Alu	59391	NM_003806	8739		NM_003806	ENSG00000135116	HRK	DP5|HARAKIRI	harakiri, BCL2 interacting protein	protein-coding
77430	chr15	84169971	84170130	+	0	NA	non-coding (NR_033787, exon 1 of 1)	non-coding (NR_033787, exon 1 of 1)	934	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
1689	chr1	4633151	4633250	+	0	NA	Intergenic	(CACAGCA)n|Simple_repeat|Simple_repeat	-21409	NM_001042478	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
213484	chr7	139046401	139046930	+	0	NA	3' UTR (NM_001363491, exon 13 of 13)	3' UTR (NM_001363491, exon 13 of 13)	-2508	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
164595	chr3	66220001	66221400	+	0	NA	promoter-TSS (NM_001350993)	promoter-TSS (NM_001350993)	-42	NM_001350993	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
37063	chr11	12356801	12357300	+	0	NA	intron (NM_032867, intron 8 of 8)	intron (NM_032867, intron 8 of 8)	-20521	NM_018222	55742		NM_018222	ENSG00000197702	PARVA	CH-ILKBP|MXRA2	parvin alpha	protein-coding
188657	chr5	157245321	157246400	+	0	NA	intron (NM_005546, intron 14 of 16)	intron (NM_005546, intron 14 of 16)	-20263	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
35343	chr11	1153251	1153750	+	0	NA	Intergenic	Intergenic	-4453	NM_001304359	4586		NM_017511	ENSG00000215182	MUC5AC	MUC5|TBM|leB|mucin	mucin 5AC, oligomeric mucus/gel-forming	protein-coding
200777	chr6	137872001	137872800	+	0	NA	intron (NM_006290, intron 2 of 8)	intron (NM_006290, intron 2 of 8)	-4167	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
117227	chr19	19417871	19418300	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	12410	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
62437	chr13	99322271	99323500	+	0	NA	intron (NR_026644, intron 6 of 8)	intron (NR_026644, intron 6 of 8)	-15486	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
236421	chrX	71286421	71286680	+	0	NA	intron (NM_001145408, intron 3 of 12)	intron (NM_001145408, intron 3 of 12)	2915	NM_001145408	4841		NM_007363	ENSG00000147140	NONO	MRXS34|NMT55|NRB54|P54|P54NRB|PPP1R114	non-POU domain containing octamer binding	protein-coding
130779	chr2	86843871	86844180	+	0	NA	intron (NM_004931, intron 5 of 5)	intron (NM_004931, intron 5 of 5)	-17800	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
154048	chr22	30591321	30592510	+	0	NA	promoter-TSS (NM_014303)	promoter-TSS (NM_014303)	-5	NM_014303	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
32260	chr10	102036001	102036200	+	0	NA	intron (NM_024541, intron 2 of 25)	SVA_F|Retroposon|SVA	20073	NM_024541	79591		NM_024541	ENSG00000120029	ARMH3	C10orf76|DGARM	armadillo like helical domain containing 3	protein-coding
33974	chr10	124655951	124656050	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-48028	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
146922	chr20	51628921	51629180	+	0	NA	exon (NM_006045, exon 16 of 28)	exon (NM_006045, exon 16 of 28)	-66211	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
93204	chr17	17819401	17820330	+	0	NA	intron (NM_001321096, intron 2 of 18)	intron (NM_001321096, intron 2 of 18)	3765	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
169806	chr3	177050721	177051300	+	0	NA	intron (NM_001374327, intron 4 of 14)	intron (NM_001374327, intron 4 of 14)	145468	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
72543	chr15	34336271	34336430	+	0	NA	intron (NM_133647, intron 1 of 24)	intron (NM_133647, intron 1 of 24)	494	NM_133647	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
117343	chr19	19531471	19531630	+	0	NA	intron (NM_198537, intron 2 of 6)	AluJb|SINE|Alu	2639	NM_198537	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
216473	chr8	19718751	19719050	+	0	NA	intron (NM_001354475, intron 1 of 9)	intron (NM_001354475, intron 1 of 9)	-36139	NR_024040	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
94115	chr17	28046501	28046900	+	0	NA	intron (NM_016231, intron 1 of 10)	intron (NM_016231, intron 1 of 10)	4023	NM_016231	51701		NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding
226856	chr9	78023121	78023380	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	8561	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
135600	chr2	168002101	168002750	+	0	NA	intron (NM_013233, intron 16 of 17)	intron (NM_013233, intron 16 of 17)	-61281	NR_131227	105616981		NR_131227	ENSG00000235335	B3GALT1-AS1	-	B3GALT1 antisense RNA 1	ncRNA
228570	chr9	103237871	103238180	+	0	NA	intron (NR_121578, intron 6 of 9)	L1HS|LINE|L1	87008	NR_121578	101928496		NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA
233370	chr9	137503351	137503650	+	0	NA	intron (NM_001098537, intron 14 of 34)	intron (NM_001098537, intron 14 of 34)	-44166	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
7860	chr1	36376201	36376830	+	0	NA	intron (NM_032017, intron 1 of 11)	L1ME4b|LINE|L1	9409	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
51703	chr12	53189501	53190530	+	0	NA	3' UTR (NM_001004304, exon 7 of 7)	3' UTR (NM_001004304, exon 7 of 7)	-9090	NM_001244705	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
112072	chr19	5292671	5294030	+	0	NA	intron (NM_130853, intron 1 of 28)	CpG	47462	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
69536	chr14	96497401	96497600	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	4826	NR_122121	730202		NR_122121		PAPOLA-DT	-	PAPOLA divergent transcript	ncRNA
235106	chrX	40570951	40571500	+	0	NA	Intergenic	MER41B|LTR|ERV1	-9745	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
233845	chrX	1507321	1508450	+	0	NA	intron (NM_178129, intron 1 of 1)	MIRc|SINE|MIR	29300	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
106310	chr18	12882251	12882350	+	0	NA	intron (NM_080422, intron 1 of 9)	intron (NM_080422, intron 1 of 9)	1937	NM_002828	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
124558	chr2	455021	455500	+	0	NA	Intergenic	Intergenic	37395	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
193793	chr6	31407871	31408030	+	0	NA	intron (NM_001177519, intron 1 of 5).2	L1MA3|LINE|L1	4355	NM_000247	100507436		NM_000247	ENSG00000204520	MICA	MIC-A|PERB11.1	MHC class I polypeptide-related sequence A	protein-coding
157533	chr22	45419271	45419430	+	0	NA	intron (NM_015653, intron 3 of 6)	L2a|LINE|L2	5657	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
86684	chr16	67518651	67519450	+	0	NA	intron (NR_104656, intron 1 of 1)	AluSx|SINE|Alu	9695	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
221024	chr8	116679471	116679850	+	0	NA	intron (NM_003756, intron 2 of 7)	SVA_F|Retroposon|SVA	27560	NR_136278	105375713		NR_136278	ENSG00000289382	LOC105375713	-	uncharacterized LOC105375713	ncRNA
59952	chr13	31431701	31431980	+	0	NA	Intergenic	Intergenic	231865	NM_194318	145173		NM_194318	ENSG00000187676	B3GLCT	B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	beta 3-glucosyltransferase	protein-coding
70161	chr14	100304651	100305950	+	0	NA	intron (NM_001352821, intron 1 of 4)	intron (NM_001352821, intron 1 of 4)	1144	NM_001291814	123096		NM_152333	ENSG00000197119	SLC25A29	C14orf69|CACL|ORNT3	solute carrier family 25 member 29	protein-coding
20599	chr1	198771751	198771930	+	0	NA	Intergenic	Intergenic	87142	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
205898	chr7	25121351	25123000	+	0	NA	3' UTR (NM_018947, exon 3 of 3)	3' UTR (NM_018947, exon 3 of 3)	3085	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
52735	chr12	56628421	56629400	+	0	NA	intron (NM_013449, intron 1 of 28)	intron (NM_013449, intron 1 of 28)	1416	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
168127	chr3	138875871	138876100	+	0	NA	Intergenic	CR1-3_Croc|LINE|CR1	-41057	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
215064	chr7	152833251	152833700	+	0	NA	intron (NM_001040135, intron 9 of 9)	intron (NM_001040135, intron 9 of 9)	73723	NM_020445	57180		NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	actin related protein 3B	protein-coding
135950	chr2	172001001	172001200	+	0	NA	intron (NM_001322279, intron 1 of 9)	MIRb|SINE|MIR	1147	NR_136276	254042		NM_199227	ENSG00000172878	METAP1D	MAP 1D|MAP1D|MetAP 1D|Metap1l	methionyl aminopeptidase type 1D, mitochondrial	protein-coding
38528	chr11	45897351	45897650	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	9771	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
27206	chr10	28581051	28581530	+	0	NA	intron (NM_100486, intron 3 of 12)	FLAM_A|SINE|Alu	48172	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
94476	chr17	29270771	29271600	+	0	NA	intron (NM_020772, intron 2 of 3)	intron (NM_020772, intron 2 of 3)	22963	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
26403	chr10	17023121	17024430	+	0	NA	intron (NM_001081, intron 27 of 66)	intron (NM_001081, intron 27 of 66)	106036	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
95449	chr17	36148051	36148350	+	0	NA	Intergenic	L1ME3G|LINE|L1	28378	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
91441	chr17	4747571	4748430	+	0	NA	Intergenic	L1MC5a|LINE|L1	7985	NM_032265	84225		NM_032265	ENSG00000141497	ZMYND15	SPGF14	zinc finger MYND-type containing 15	protein-coding
211295	chr7	103277921	103278480	+	0	NA	intron (NR_027768, intron 1 of 22)	intron (NR_027768, intron 1 of 22)	2112	NR_003561	349152		NM_182634	ENSG00000291139	DPY19L2P2	-	DPY19L2 pseudogene 2	pseudo
58900	chr13	19633301	19634650	+	0	NA	intron (NM_017520, intron 1 of 13)	intron (NM_017520, intron 1 of 13)	316	NM_017520	54737		NM_017520	ENSG00000196199	MPHOSPH8	HSMPP8|TWA3|mpp8	M-phase phosphoprotein 8	protein-coding
70868	chr14	103730271	103730830	+	0	NA	intron (NM_001198953, intron 6 of 7)	intron (NM_001198953, intron 6 of 7)	14740	NM_024071	79038		NM_024071	ENSG00000100711	ZFYVE21	HCVP7TP1|ZF21	zinc finger FYVE-type containing 21	protein-coding
123096	chr19	51463801	51464200	+	0	NA	Intergenic	Intergenic	-5546	NM_001363548	27181		NM_014442	ENSG00000105366	SIGLEC8	SAF2|SIGLEC-8|SIGLEC8L	sialic acid binding Ig like lectin 8	protein-coding
132498	chr2	106053121	106053580	+	0	NA	Intergenic	Intergenic	-12338	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
18698	chr1	167433621	167434150	+	0	NA	intron (NM_198053, intron 6 of 7)	intron (NM_198053, intron 6 of 7)	84644	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
186888	chr5	139562951	139563190	+	0	NA	intron (NM_181838, intron 2 of 7)	AluJo|SINE|Alu	1731	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
19431	chr1	174258101	174258450	+	0	NA	intron (NM_001366447, intron 7 of 20)	intron (NM_001366447, intron 7 of 20)	-16825	NM_001366449	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
193694	chr6	31120601	31121000	+	0	NA	promoter-TSS (NM_001264)	promoter-TSS (NM_001264)	-354	NM_001264	1041		NM_001264	ENSG00000204539	CDSN	HTSS|HTSS1|HYPT2|PSS|PSS1	corneodesmosin	protein-coding
45114	chr11	117143521	117146150	+	0	NA	intron (NR_110282, intron 1 of 2)	CpG	548	NM_002572	5049		NM_002572	ENSG00000168092	PAFAH1B2	HEL-S-303	platelet activating factor acetylhydrolase 1b catalytic subunit 2	protein-coding
212979	chr7	130977721	130978050	+	0	NA	intron (NR_109851, intron 4 of 5)	AluSx|SINE|Alu	64421	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
46347	chr11	125627251	125627350	+	0	NA	intron (NM_001330428, intron 2 of 11)	intron (NM_001330428, intron 2 of 11)	944	NM_001274	1111		NM_001274	ENSG00000149554	CHEK1	CHK1|OZEMA21	checkpoint kinase 1	protein-coding
203544	chr7	879971	880200	+	0	NA	intron (NM_015949, intron 1 of 8)	AluSp|SINE|Alu	3531	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
24472	chr1	244053621	244054080	+	0	NA	exon (NM_006352, exon 1 of 1)	exon (NM_006352, exon 1 of 1)	645	NM_006352	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
81080	chr16	4342301	4342500	+	0	NA	intron (NM_016069, intron 2 of 4)	AluSp|SINE|Alu	8921	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
37301	chr11	14746101	14746300	+	0	NA	intron (NM_001363569, intron 1 of 15)	AluSz|SINE|Alu	102396	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
184169	chr5	95773371	95773730	+	0	NA	intron (NM_014899, intron 8 of 11)	MIRc|SINE|MIR	-41448	NM_001349303	83890		NM_031952	ENSG00000145757	SPATA9	NYD-SP16	spermatogenesis associated 9	protein-coding
187116	chr5	140408751	140409500	+	0	NA	intron (NM_020690, intron 1 of 35)	intron (NM_020690, intron 1 of 35)	7292	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
236233	chrX	65721651	65721750	+	0	NA	intron (NM_002444, intron 2 of 12)	MIRc|SINE|MIR	54046	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
97202	chr17	42704771	42705330	+	0	NA	intron (NM_001321082, intron 16 of 19)	intron (NM_001321082, intron 16 of 19)	3101	NR_106838	102466195		NR_106838	ENSG00000275273	MIR6780A	hsa-mir-6780a	microRNA 6780a	ncRNA
121343	chr19	46790321	46790580	+	0	NA	Intergenic	AluSc|SINE|Alu	-1856	NM_005628	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
202795	chr6	159110871	159111650	+	0	NA	Intergenic	Intergenic	-58140	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
10514	chr1	66922801	66923300	+	0	NA	intron (NM_207014, intron 1 of 9)	Tigger3|DNA|TcMar-Tigger	1806	NM_207014	79819		NM_024763	ENSG00000152763	DNAI4	DIC4|WDR78	dynein axonemal intermediate chain 4	protein-coding
191120	chr6	4030521	4030980	+	0	NA	intron (NR_146785, intron 1 of 20)	MADE2|DNA|TcMar-Mariner	9450	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
37972	chr11	34840851	34840950	+	0	NA	Intergenic	Intergenic	-75230	NM_001166158	8050		NM_003477	ENSG00000110435	PDHX	DLDBP|E3BP|OPDX|PDHXD|PDX1|proX	pyruvate dehydrogenase complex component X	protein-coding
121227	chr19	46631851	46632150	+	0	NA	Intergenic	Intergenic	2682	NM_033258	94235		NM_033258	ENSG00000167414	GNG8	HG3E	G protein subunit gamma 8	protein-coding
160273	chr3	25785721	25786080	+	0	NA	intron (NM_001145294, intron 1 of 11)	intron (NM_001145294, intron 1 of 11)	-2402	NM_001145295	55768		NM_018297	ENSG00000151092	NGLY1	CDDG|CDG1V|PNG-1|PNG1|PNGase	N-glycanase 1	protein-coding
73250	chr15	41806571	41806730	+	0	NA	intron (NM_014994, intron 3 of 30)	intron (NM_014994, intron 3 of 30)	-21435	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
65904	chr14	55276121	55276380	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	4096	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
129378	chr2	68798151	68798250	+	0	NA	intron (NM_001364819, intron 4 of 10)	intron (NM_001364819, intron 4 of 10)	23290	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
115267	chr19	14542721	14543580	+	0	NA	intron (NM_138501, intron 1 of 12)	intron (NM_138501, intron 1 of 12)	13556	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
177371	chr4	110622201	110622400	+	0	NA	exon (NM_000325, exon 1 of 3)	exon (NM_000325, exon 1 of 3)	777	NM_000325	5308		NM_000325	ENSG00000164093	PITX2	ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired like homeodomain 2	protein-coding
799	chr1	1547921	1548350	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	-7511	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
7111	chr1	32140921	32141180	+	0	NA	intron (NM_012316, intron 1 of 13)	intron (NM_012316, intron 1 of 13)	32994	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
78683	chr15	95864171	95864780	+	0	NA	Intergenic	Intergenic	263366	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
5178	chr1	24941101	24941400	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-10974	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
42423	chr11	69086901	69087100	+	0	NA	intron (NM_139075, intron 23 of 24)	intron (NM_139075, intron 23 of 24)	3824	NR_036122	100422846		NR_036122	ENSG00000265539	MIR3164	-	microRNA 3164	ncRNA
239060	chrY	7290021	7291380	+	0	NA	intron (NR_028062, intron 1 of 7)	intron (NR_028062, intron 1 of 7)	16728	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
165420	chr3	98188571	98188880	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	20025	NM_001005515	403274		NM_001005515	ENSG00000233412	OR5H15	-	olfactory receptor family 5 subfamily H member 15	protein-coding
2707	chr1	10647421	10648330	+	0	NA	exon (NM_001079843, exon 16 of 21)	exon (NM_001079843, exon 16 of 21)	148771	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
129651	chr2	70193251	70193350	+	0	NA	Intergenic	AluSg4|SINE|Alu	-2281	NR_145967	54980		NM_017880	ENSG00000115998	C2orf42	-	chromosome 2 open reading frame 42	protein-coding
119604	chr19	40756501	40757380	+	0	NA	intron (NM_004596, intron 1 of 5)	L2a|LINE|L2	5737	NM_004596	6626		NM_004596	ENSG00000077312	SNRPA	Mud1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding
146407	chr20	49347701	49348430	+	0	NA	Intergenic	Intergenic	67382	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
121192	chr19	46522671	46523430	+	0	NA	intron (NM_001370551, intron 3 of 3)	LTR109A2|LTR|ERV1	-27183	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
210975	chr7	101805021	101805500	+	0	NA	Intergenic	Intergenic	-10747	NM_181500	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
62089	chr13	94559471	94559780	+	0	NA	Intergenic	L1MC5a|LINE|L1	-10219	NM_001322184	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
177658	chr4	121277651	121277750	+	0	NA	Intergenic	Intergenic	-50217	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
206280	chr7	29884551	29884650	+	0	NA	intron (NM_001080529, intron 5 of 8)	CpG	78046	NM_001080529	644150		NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family member 3	protein-coding
64395	chr14	24164471	24164880	+	0	NA	exon (NM_006084, exon 7 of 9).2	exon (NM_006084, exon 7 of 9).2	3410	NM_001385400	10379		NM_006084	ENSG00000213928	IRF9	IRF-9|ISGF3|ISGF3G|p48	interferon regulatory factor 9	protein-coding
42375	chr11	68825551	68826250	+	0	NA	intron (NM_001031847, intron 1 of 18)	intron (NM_001031847, intron 1 of 18)	16016	NM_001876	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
25804	chr10	11189071	11189230	+	0	NA	intron (NM_001326346, intron 2 of 11)	L1ME1|LINE|L1	24120	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
158315	chr22	50431371	50431730	+	0	NA	intron (NM_001351641, intron 11 of 23)	intron (NM_001351641, intron 11 of 23)	24108	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
118395	chr19	35736471	35736830	+	0	NA	intron (NM_014727, intron 30 of 36)	intron (NM_014727, intron 30 of 36)	5802	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
160540	chr3	30668101	30668780	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	61839	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
31643	chr10	97395951	97396450	+	0	NA	intron (NM_015179, intron 3 of 33)	intron (NM_015179, intron 3 of 33)	5140	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
231738	chr9	132007021	132007430	+	0	NA	intron (NM_001253881, intron 3 of 6)	intron (NM_001253881, intron 3 of 6)	72642	NM_001253882	9442		NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|NEDSCAC|TRAP37	mediator complex subunit 27	protein-coding
200799	chr6	137895201	137896050	+	0	NA	Intergenic	Intergenic	-27392	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
130797	chr2	86863451	86863830	+	0	NA	intron (NR_037931, intron 1 of 14)	intron (NR_037931, intron 1 of 14)	-1716	NM_001178100	926		NM_004931	ENSG00000172116	CD8B	CD8B1|CD8beta|LEU2|LY3|LYT3|Ly-3|P37	CD8 subunit beta	protein-coding
12776	chr1	109657401	109657800	+	0	NA	exon (NM_000850, exon 4 of 8)	exon (NM_000850, exon 4 of 8)	1501	NM_000850	2948		NM_000850	ENSG00000168765	GSTM4	GSTM4-4|GTM4	glutathione S-transferase mu 4	protein-coding
2648	chr1	10427021	10427280	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-3283	NM_198544	100526739		NM_198544	ENSG00000251503	CENPS-CORT	APITD1|APITD1-CORT|CENP-S|CENPS|FAAP16|MHF1	CENPS-CORT readthrough	protein-coding
121049	chr19	45823601	45824200	+	0	NA	intron (NM_004819, intron 18 of 26)	intron (NM_004819, intron 18 of 26)	-8592	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
17780	chr1	159171871	159172230	+	0	NA	intron (NM_001346510, intron 1 of 8)	intron (NM_001346510, intron 1 of 8)	435	NM_001127173	57863		NM_021189	ENSG00000162706	CADM3	BIgR|CMT2FF|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3	cell adhesion molecule 3	protein-coding
151385	chr21	45971671	45972180	+	0	NA	Intergenic	Intergenic	-1045	NR_109931	101928796		NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
119954	chr19	41879621	41879880	+	0	NA	intron (NM_021601, intron 3 of 4)	MIR|SINE|MIR	2471	NM_001783	973		NM_001783	ENSG00000105369	CD79A	IGA|IGAlpha|MB-1|MB1	CD79a molecule	protein-coding
129901	chr2	73228671	73228930	+	0	NA	non-coding (NR_144358, exon 4 of 5)	non-coding (NR_144358, exon 4 of 5)	4439	NM_032319	84279		NM_032319	ENSG00000135617	PRADC1	C2orf7|PAP21	protease associated domain containing 1	protein-coding
177908	chr4	129264171	129264550	+	0	NA	Intergenic	L2b|LINE|L2	168208	NM_001099783	132321		NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
64360	chr14	24108521	24109380	+	0	NA	intron (NM_006177, intron 1 of 3).2	intron (NM_006177, intron 1 of 3).2	-5747	NM_001163484	80344		NM_025230	ENSG00000100897	DCAF11	GL014|PRO2389|WDR23	DDB1 and CUL4 associated factor 11	protein-coding
83718	chr16	28507601	28508800	+	0	NA	Intergenic	Intergenic	-1366	NM_145659	246778		NM_145659	ENSG00000197272	IL27	IL-27|IL-27A|IL27A|IL27p28|IL30|p28	interleukin 27	protein-coding
187634	chr5	143001601	143003680	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-133730	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
82507	chr16	17451521	17452050	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	19175	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
188422	chr5	154199621	154200180	+	0	NA	intron (NM_198321, intron 1 of 11)	MIRb|SINE|MIR	9167	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
161993	chr3	46369721	46370180	+	0	NA	promoter-TSS (NM_000579)	promoter-TSS (NM_000579)	-192	NM_000579	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
103529	chr17	78558221	78558680	+	0	NA	intron (NM_173628, intron 13 of 80)	intron (NM_173628, intron 13 of 80)	18946	NM_173628	8632		NM_003727	ENSG00000187775	DNAH17	DNAHL1|DNEL2|SPGF39	dynein axonemal heavy chain 17	protein-coding
228327	chr9	98575671	98575830	+	0	NA	intron (NM_005458, intron 2 of 18)	intron (NM_005458, intron 2 of 18)	133185	NM_005458	9568		NM_005458	ENSG00000136928	GABBR2	DEE59|EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS	gamma-aminobutyric acid type B receptor subunit 2	protein-coding
233527	chrX	18251	18350	+	0	NA	Intergenic	Intergenic	-258056	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
116500	chr19	18145251	18145350	+	0	NA	intron (NM_015016, intron 23 of 26)	intron (NM_015016, intron 23 of 26)	-7863	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
206001	chr7	26204221	26204980	+	0	NA	intron (NM_016587, intron 2 of 5)	intron (NM_016587, intron 2 of 5)	2855	NM_016587	11335		NM_007276	ENSG00000122565	CBX3	HECH|HP1-GAMMA|HP1Hs-gamma|HP1gamma	chromobox 3	protein-coding
185290	chr5	126503621	126503880	+	0	NA	Intergenic	Intergenic	38600	NM_001146322	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
119703	chr19	41125351	41125880	+	0	NA	exon (NM_000774, exon 9 of 10)	exon (NM_000774, exon 9 of 10)	11183	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
206334	chr7	30318051	30318350	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-28310	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
29428	chr10	70322271	70322430	+	0	NA	intron (NR_103468, intron 2 of 2)	intron (NR_103468, intron 2 of 2)	-38346	NM_022146	64106		NM_022146	ENSG00000148734	NPFFR1	GPR147|NPFF1|NPFF1R1|OT7T022	neuropeptide FF receptor 1	protein-coding
205866	chr7	24979901	24981000	+	0	NA	promoter-TSS (NM_015550)	promoter-TSS (NM_015550)	-272	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
98994	chr17	48743401	48744080	+	0	NA	Intergenic	Intergenic	-14990	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
33730	chr10	122339151	122339250	+	0	NA	Intergenic	Intergenic	-35508	NM_001377247	59338		NM_021622	ENSG00000107679	PLEKHA1	TAPP1	pleckstrin homology domain containing A1	protein-coding
3047	chr1	12155071	12155230	+	0	NA	Intergenic	Intergenic	-11793	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
228243	chr9	97969901	97970420	+	0	NA	Intergenic	HAL1|LINE|L1	-13181	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
187733	chr5	143433051	143433150	+	0	NA	intron (NM_001018075, intron 1 of 8)	MamTip2|DNA|hAT-Tip100	1709	NM_001364183	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
221942	chr8	129909821	129910300	+	0	NA	intron (NM_001353246, intron 1 of 12)	intron (NM_001353246, intron 1 of 12)	29751	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
175832	chr4	78166601	78166800	+	0	NA	intron (NM_025074, intron 2 of 73)	intron (NM_025074, intron 2 of 73)	109130	NM_001166133	80144		NM_020875	ENSG00000138759	FRAS1	FRASRS1	Fraser extracellular matrix complex subunit 1	protein-coding
11415	chr1	89718221	89718480	+	0	NA	3' UTR (NM_032270, exon 3 of 3)	3' UTR (NM_032270, exon 3 of 3)	85230	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
6266	chr1	27578221	27578880	+	0	NA	intron (NM_001029882, intron 1 of 6)	AluSx1|SINE|Alu	24944	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
57967	chr12	123921471	123921630	+	0	NA	intron (NM_207437, intron 64 of 77)	HAL1|LINE|L1	50509	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
101435	chr17	67424571	67424730	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSx1|SINE|Alu	-46839	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
108638	chr18	76490721	76491900	+	0	NA	promoter-TSS (NR_136504)	promoter-TSS (NR_136504)	-342	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
123068	chr19	51370151	51370750	+	0	NA	Intergenic	Intergenic	-1447	NM_152353	125875		NM_152353	ENSG00000160318	CLDND2	-	claudin domain containing 2	protein-coding
132466	chr2	105877121	105877450	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	25438	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
168292	chr3	141508221	141508500	+	0	NA	intron (NM_006506, intron 1 of 23)	intron (NM_006506, intron 1 of 23)	21333	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
179755	chr5	257521	258880	+	0	NA	Intergenic	Intergenic	13324	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
170726	chr3	188152471	188153250	+	0	NA	promoter-TSS (NM_001375456)	promoter-TSS (NM_001375456)	-161	NM_001375455	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
140117	chr2	231517151	231518050	+	0	NA	Intergenic	L1MC5a|LINE|L1	-3261	NR_024079	151477		NM_173513	ENSG00000181798	LINC00471	C2orf52	long intergenic non-protein coding RNA 471	ncRNA
77932	chr15	89323471	89324330	+	0	NA	exon (NM_001126131, exon 12 of 23)	exon (NM_001126131, exon 12 of 23)	2910	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
183757	chr5	81630921	81631530	+	0	NA	intron (NM_001256733, intron 3 of 15)	intron (NM_001256733, intron 3 of 15)	120028	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
76607	chr15	75371821	75372080	+	0	NA	3' UTR (NM_001145357, exon 21 of 21)	3' UTR (NM_001145357, exon 21 of 21)	-3323	NM_001256496	4123		NM_006715	ENSG00000140400	MAN2C1	CDDG2|MAN6A8|MANA|MANA1	mannosidase alpha class 2C member 1	protein-coding
115139	chr19	14388001	14388450	+	0	NA	intron (NM_001025160, intron 1 of 18)	AluJo|SINE|Alu	6781	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
11632	chr1	91750201	91750600	+	0	NA	intron (NR_036634, intron 5 of 17)	intron (NR_036634, intron 5 of 17)	135751	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
80049	chr16	1967401	1967900	+	0	NA	intron (NM_001348711, intron 2 of 3)	intron (NM_001348711, intron 2 of 3)	794	NM_174903	146310		NM_174903	ENSG00000179580	RNF151	-	ring finger protein 151	protein-coding
184237	chr5	96654301	96654800	+	0	NA	Intergenic	Intergenic	-7487	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
202822	chr6	159692481	159694000	+	0	NA	promoter-TSS (NM_001322816)	promoter-TSS (NM_001322816)	1	NM_001322815	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
228821	chr9	112002471	112002850	+	0	NA	Intergenic	Intergenic	70560	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
154067	chr22	30666901	30668430	+	0	NA	5' UTR (NM_001304794, exon 1 of 3)	5' UTR (NM_001304794, exon 1 of 3)	210	NM_152511	150290		NM_152511	ENSG00000167065	DUSP18	DSP18|DUSP20|LMWDSP20	dual specificity phosphatase 18	protein-coding
106163	chr18	9926221	9926930	+	0	NA	intron (NM_194434, intron 1 of 5)	LTR40a|LTR|ERVL	12559	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
130542	chr2	85663571	85664230	+	0	NA	intron (NM_000542, intron 6 of 10)	MIRb|SINE|MIR	4299	NM_001367281	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
166984	chr3	125763401	125763600	+	0	NA	Intergenic	Intergenic	-11214	NR_153417	105374312		NR_153417	ENSG00000272840	LOC105374312	-	uncharacterized LOC105374312	ncRNA
27723	chr10	34555851	34555950	+	0	NA	intron (NM_019619, intron 2 of 24)	MLT1O|LTR|ERVL-MaLR	259396	NM_001184794	56288		NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
164826	chr3	70991151	70991250	+	0	NA	intron (NR_146143, intron 12 of 19)	intron (NR_146143, intron 12 of 19)	73724	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
212946	chr7	130941271	130941800	+	0	NA	TTS (NR_109855)	TTS (NR_109855)	28071	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
196278	chr6	42975371	42976200	+	0	NA	intron (NM_001316313, intron 1 of 16)	AluSx3|SINE|Alu	3396	NM_001316313	5190		NM_000287	ENSG00000124587	PEX6	HMLR2|PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
98068	chr17	45486551	45487080	+	0	NA	intron (NM_014798, intron 1 of 11).3	intron (NM_014798, intron 1 of 11).3	3906	NR_027774	9842		NM_014798	ENSG00000225190	PLEKHM1	AP162|B2|OPTA3|OPTB6	pleckstrin homology and RUN domain containing M1	protein-coding
135422	chr2	161146821	161147480	+	0	NA	intron (NM_133484, intron 1 of 3)	L1PA8|LINE|L1	10187	NM_004180	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
163973	chr3	53043071	53043650	+	0	NA	intron (NM_016329, intron 1 of 20)	intron (NM_016329, intron 1 of 20)	2713	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
9324	chr1	46549521	46550850	+	0	NA	intron (NM_001322255, intron 1 of 3)	intron (NM_001322255, intron 1 of 3)	1030	NM_001097611	148930		NM_182516	ENSG00000162456	KNCN	Kino|L5	kinocilin	protein-coding
182533	chr5	65626501	65627130	+	0	NA	intron (NM_001365343, intron 1 of 10)	intron (NM_001365343, intron 1 of 10)	1788	NM_024941	80006		NM_024941	ENSG00000113597	TRAPPC13	C5orf44|SHLD3	trafficking protein particle complex subunit 13	protein-coding
51226	chr12	50759121	50759730	+	0	NA	Intergenic	AluJr|SINE|Alu	-4676	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
29646	chr10	71852521	71852930	+	0	NA	Intergenic	Intergenic	-1474	NM_001042466	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
171524	chr3	196671201	196671400	+	0	NA	Intergenic	Intergenic	31606	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
239119	chrY	11299171	11299700	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	1122155	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
109117	chr18	80107401	80108200	+	0	NA	Intergenic	Intergenic	-1462	NM_014913	22850		NM_014913	ENSG00000101544	ADNP2	ZNF508	ADNP homeobox 2	protein-coding
138290	chr2	203714221	203714680	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	7811	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
204791	chr7	5621801	5622450	+	0	NA	3' UTR (NM_001377156, exon 18 of 18)	3' UTR (NM_001377156, exon 18 of 18)	29309	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
211413	chr7	105044451	105044980	+	0	NA	intron (NM_182931, intron 3 of 26)	intron (NM_182931, intron 3 of 26)	30510	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
84949	chr16	31358951	31359050	+	0	NA	intron (NM_000887, intron 5 of 29)	AluJr|SINE|Alu	3824	NM_000887	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
178070	chr4	140071721	140072380	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-55965	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
85976	chr16	57377151	57377450	+	0	NA	intron (NM_001304392, intron 1 of 1)	intron (NM_001304392, intron 1 of 1)	4810	NM_002996	6376		NM_002996	ENSG00000006210	CX3CL1	ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin	C-X3-C motif chemokine ligand 1	protein-coding
60717	chr13	44191301	44192030	+	0	NA	Intergenic	Intergenic	4535	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
4834	chr1	23630751	23631250	+	0	NA	intron (NR_167910, intron 4 of 5)	AluJb|SINE|Alu	3666	NR_167904	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
212690	chr7	129708171	129708330	+	0	NA	intron (NM_001293163, intron 5 of 11)	intron (NM_001293163, intron 5 of 11)	62242	NR_029614	406958		NR_029614	ENSG00000207990	MIR182	MIRN182|miRNA182|mir-182	microRNA 182	ncRNA
39587	chr11	61281471	61281830	+	0	NA	intron (NM_152718, intron 7 of 19)	CpG	13666	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
49519	chr12	25387301	25387900	+	0	NA	Intergenic	Intergenic	-136671	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
27881	chr10	41867971	41868130	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	499995	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
112196	chr19	5676101	5676300	+	0	NA	Intergenic	AluJb|SINE|Alu	4038	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
152116	chr22	19909301	19910180	+	0	NA	intron (NR_147957, intron 7 of 16)	(AC)n|Simple_repeat|Simple_repeat	22813	NM_001352301	10587		NM_006440	ENSG00000184470	TXNRD2	GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2|TXNR2	thioredoxin reductase 2	protein-coding
218483	chr8	51897901	51900280	+	0	NA	promoter-TSS (NM_001363193)	promoter-TSS (NM_001363193)	-54	NM_052937	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
123172	chr19	52230721	52231180	+	0	NA	Intergenic	Intergenic	8930	NR_106859	102466984		NR_106859	ENSG00000274380	MIR6801	hsa-mir-6801	microRNA 6801	ncRNA
95813	chr17	38744801	38745000	+	0	NA	intron (NM_001369614, intron 1 of 9)	MIR3|SINE|MIR	1728	NM_001369615	7703		NM_007144	ENSG00000277258	PCGF2	MEL-18|RNF110|TPFS|ZNF144	polycomb group ring finger 2	protein-coding
169969	chr3	179262421	179263080	+	0	NA	intron (NM_171828, intron 1 of 3)	LTR12C|LTR|ERV1	-2859	NR_028135	27094		NM_014407	ENSG00000171121	KCNMB3	BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3	potassium calcium-activated channel subfamily M regulatory beta subunit 3	protein-coding
215408	chr7	157576251	157577200	+	0	NA	exon (NM_001308267, exon 18 of 22)	exon (NM_001308267, exon 18 of 22)	-2303	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
12256	chr1	100447571	100447950	+	0	NA	intron (NM_001319212, intron 7 of 13)	MamGypsy2-I|LTR|Gypsy	-90379	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
27188	chr10	28557451	28557750	+	0	NA	intron (NM_100486, intron 3 of 12)	AluJr|SINE|Alu	24482	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
99642	chr17	50625921	50626800	+	0	NA	exon (NM_001256330, exon 35 of 35)	exon (NM_001256330, exon 35 of 35)	-8521	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
50176	chr12	45989571	45991300	+	0	NA	5' UTR (NM_004719, exon 1 of 15)	5' UTR (NM_004719, exon 1 of 15)	139	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
20825	chr1	201426551	201426930	+	0	NA	Intergenic	Intergenic	-5010	NM_003281	7135		NM_003281	ENSG00000159173	TNNI1	SSTNI|TNN1	troponin I1, slow skeletal type	protein-coding
204460	chr7	4643451	4643550	+	0	NA	Intergenic	Intergenic	-38795	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
33121	chr10	112183151	112184430	+	0	NA	promoter-TSS (NM_001244949)	promoter-TSS (NM_001244949)	-25	NM_001244949	57678		NM_020918	ENSG00000119927	GPAM	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
113451	chr19	9848051	9848880	+	0	NA	intron (NM_006221, intron 3 of 3)	intron (NM_006221, intron 3 of 3)	9710	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
123404	chr19	53979901	53980500	+	0	NA	intron (NM_031895, intron 3 of 3)	CpG-15118	-2107	NR_030632	100126325		NR_030632	ENSG00000284583	MIR935	MIRN935|hsa-mir-935|mir-935	microRNA 935	ncRNA
197645	chr6	84190251	84190350	+	0	NA	intron (NM_014895, intron 11 of 26)	LTR12C|LTR|ERV1	37343	NM_014895	22832		NM_014895	ENSG00000135315	CEP162	C6orf84|KIAA1009|QN1	centrosomal protein 162	protein-coding
188600	chr5	157183421	157183680	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	2710	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
180161	chr5	1408621	1408900	+	0	NA	intron (NM_001044, intron 11 of 14).2	intron (NM_001044, intron 11 of 14).2	-28687	NR_125810	100506791		NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA
147015	chr20	53585121	53585400	+	0	NA	intron (NM_006526, intron 1 of 5)	intron (NM_006526, intron 1 of 5)	8579	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
152634	chr22	21469651	21469830	+	0	NA	exon (NM_001207052, exon 9 of 9)	exon (NM_001207052, exon 9 of 9)	2570	NM_001207052	645426		NM_001207052	ENSG00000206140	TMEM191C	-	transmembrane protein 191C	protein-coding
14647	chr1	145590801	145591180	+	0	NA	non-coding (NR_104217, exon 5 of 20)	non-coding (NR_104217, exon 5 of 20)	16868	NR_104217	101929780		NR_104217	ENSG00000291005	NBPF25P	WI2-925H4.1	NBPF member 25, pseudogene	pseudo
24734	chr1	248253351	248253450	+	0	NA	Intergenic	L1PA3|LINE|L1	14471	NM_017504	26245		NM_017504	ENSG00000171180	OR2M4	HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100	olfactory receptor family 2 subfamily M member 4	protein-coding
74894	chr15	63596951	63597780	+	0	NA	promoter-TSS (NM_001367808)	promoter-TSS (NM_001367808)	-22	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
112168	chr19	5653671	5654030	+	0	NA	intron (NM_001320571, intron 9 of 18)	AluSz6|SINE|Alu	26388	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
59617	chr13	27924871	27925030	+	0	NA	3' UTR (NM_000209, exon 2 of 2)	3' UTR (NM_000209, exon 2 of 2)	4950	NM_000209	3651		NM_000209	ENSG00000139515	PDX1	GSF|IDX-1|IPF1|IUF1|MODY4|PAGEN1|PDX-1|STF-1	pancreatic and duodenal homeobox 1	protein-coding
165952	chr3	107675571	107675930	+	0	NA	intron (NM_020235, intron 3 of 16)	MIRb|SINE|MIR	152788	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
79465	chr16	734871	735430	+	0	NA	intron (NM_022493, intron 4 of 10)	MER54A|LTR|ERVL	5847	NM_022493	64428		NM_022493	ENSG00000103245	CIAO3	HPRN|IOP1|LET1L|NAR1|NARFL|PRN	cytosolic iron-sulfur assembly component 3	protein-coding
60925	chr13	46213101	46213850	+	0	NA	intron (NM_001282460, intron 2 of 9)	Tigger17a|DNA|TcMar-Tigger	1547	NM_001282460	220416		NM_001024609	ENSG00000173988	LRRC63	-	leucine rich repeat containing 63	protein-coding
73770	chr15	45585001	45585700	+	0	NA	Intergenic	MER4D1|LTR|ERV1	-1773	NR_132354	26258		NM_012388	ENSG00000104164	BLOC1S6	BLOS6|HPS9|PA|PALLID|PLDN	biogenesis of lysosomal organelles complex 1 subunit 6	protein-coding
7043	chr1	31943001	31943330	+	0	NA	Intergenic	Intergenic	-4797	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
191674	chr6	13461451	13461950	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	10363	NR_038459	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
35384	chr11	1311131	1311600	+	0	NA	TTS (NR_029409)	TTS (NR_029409)	1657	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
28487	chr10	49817821	49818080	+	0	NA	TTS (NR_136753)	TTS (NR_136753)	-55571	NM_001347823	55753		NM_018245	ENSG00000197444	OGDHL	YOBELN	oxoglutarate dehydrogenase L	protein-coding
184010	chr5	91101821	91102080	+	0	NA	intron (NR_003149, intron 86 of 89)	intron (NR_003149, intron 86 of 89)	212452	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
46149	chr11	123052471	123052900	+	0	NA	Intergenic	L1MB8|LINE|L1	5471	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
188950	chr5	160486321	160487230	+	0	NA	non-coding (NR_132748, exon 2 of 2)	non-coding (NR_132748, exon 2 of 2)	1423	NR_029701	406938		NR_029701	ENSG00000283733	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
177877	chr4	128782401	128782800	+	0	NA	Intergenic	Intergenic	-27100	NM_199320	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
33828	chr10	123967671	123967830	+	0	NA	Intergenic	Intergenic	-75943	NM_198148	119587		NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	carboxypeptidase X, M14 family member 2	protein-coding
8731	chr1	42685601	42685880	+	0	NA	intron (NM_004559, intron 2 of 7)	intron (NM_004559, intron 2 of 7)	2604	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
207595	chr7	44967101	44968400	+	0	NA	intron (NM_033054, intron 13 of 21)	intron (NM_033054, intron 13 of 21)	11265	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
165602	chr3	101672871	101673830	+	0	NA	intron (NM_014415, intron 1 of 10)	intron (NM_014415, intron 1 of 10)	-3080	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
88956	chr16	87847671	87849030	+	0	NA	intron (NM_003486, intron 2 of 9)	intron (NM_003486, intron 2 of 9)	-5546	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
72584	chr15	34967771	34968280	+	0	NA	intron (NM_014691, intron 1 of 34)	AluSp|SINE|Alu	1717	NM_014691	9716		NM_014691	ENSG00000021776	AQR	IBP160|fSAP164	aquarius intron-binding spliceosomal factor	protein-coding
67981	chr14	74908351	74909180	+	0	NA	intron (NR_163405, intron 10 of 13)	intron (NR_163405, intron 10 of 13)	13677	NR_163406	83694		NM_031464	ENSG00000198208	RPS6KL1	RSKL2	ribosomal protein S6 kinase like 1	protein-coding
79490	chr16	775071	775880	+	0	NA	Intergenic	Intergenic	5292	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
148539	chr20	64133701	64133900	+	0	NA	Intergenic	Intergenic	-26235	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
136803	chr2	181680521	181681050	+	0	NA	promoter-TSS (NM_002500)	promoter-TSS (NM_002500)	-120	NR_146175	4760		NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|T2D|bHLHa3	neuronal differentiation 1	protein-coding
121076	chr19	45882171	45882330	+	0	NA	Intergenic	Intergenic	3891	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
125153	chr2	10014471	10015050	+	0	NA	Intergenic	CpG	28641	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
10135	chr1	59731151	59731450	+	0	NA	intron (NM_001244714, intron 12 of 13)	intron (NM_001244714, intron 12 of 13)	1996	NR_039861	100616409		NR_039861	ENSG00000266150	MIR4711	-	microRNA 4711	ncRNA
96414	chr17	40164971	40165130	+	0	NA	intron (NM_007359, intron 7 of 13)	AluY|SINE|Alu	3117	NR_106926	102466986		NR_106926	ENSG00000284144	MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
152733	chr22	21687101	21687300	+	0	NA	intron (NM_148175, intron 12 of 20)	intron (NM_148175, intron 12 of 20)	21188	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
213275	chr7	134669251	134670350	+	0	NA	intron (NM_001293085, intron 3 of 3)	intron (NM_001293085, intron 3 of 3)	22947	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
64025	chr14	22513801	22514600	+	0	NA	Intergenic	Intergenic	-31241	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
230088	chr9	127523521	127523780	+	0	NA	intron (NM_022833, intron 5 of 13)	intron (NM_022833, intron 5 of 13)	45423	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
237894	chrX	131734601	131734800	+	0	NA	intron (NR_152876, intron 8 of 9)	intron (NR_152876, intron 8 of 9)	95943	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
16763	chr1	155332551	155333050	+	0	NA	Intergenic	AluSp|SINE|Alu	8293	NM_001278230	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
153557	chr22	26628671	26629050	+	0	NA	intron (NM_001886, intron 5 of 5)	MLT1K|LTR|ERVL-MaLR	6897	NM_001886	1413		NM_001886	ENSG00000196431	CRYBA4	CTRCT23|CYRBA4|MCOPCT4	crystallin beta A4	protein-coding
48122	chr12	7890851	7891350	+	0	NA	promoter-TSS (NM_001286237)	promoter-TSS (NM_001286237)	96	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
199748	chr6	125804021	125804780	+	0	NA	intron (NR_126386, intron 1 of 2)	intron (NR_126386, intron 1 of 2)	13440	NM_001199621	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
66269	chr14	61369071	61369600	+	0	NA	intron (NM_006255, intron 1 of 13)	MER5A|DNA|hAT-Charlie	47892	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
45535	chr11	118752021	118752680	+	0	NA	intron (NM_004397, intron 13 of 13)	intron (NM_004397, intron 13 of 13)	38598	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
1916	chr1	6467701	6468100	+	0	NA	exon (NM_001042664, exon 20 of 21)	exon (NM_001042664, exon 20 of 21)	-1705	NM_148966	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
231390	chr9	130715801	130716280	+	0	NA	intron (NM_007313, intron 1 of 10)	Charlie1a|DNA|hAT-Charlie	2159	NM_007313	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
67792	chr14	73761521	73761900	+	0	NA	intron (NM_001043318, intron 1 of 11)	MIRb|SINE|MIR	-1407	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
143628	chr20	31775871	31776030	+	0	NA	exon (NM_012112, exon 8 of 18)	exon (NM_012112, exon 8 of 18)	36660	NM_012112	22974		NM_012112	ENSG00000088325	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2 microtubule nucleation factor	protein-coding
191773	chr6	14121721	14122550	+	0	NA	intron (NM_001040280, intron 2 of 4)	intron (NM_001040280, intron 2 of 4)	4363	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
150863	chr21	44090421	44091080	+	0	NA	intron (NM_003274, intron 18 of 22)	intron (NM_003274, intron 18 of 22)	16426	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
123592	chr19	54470821	54472180	+	0	NA	intron (NM_145057, intron 2 of 2).4	CpG	1796	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
138392	chr2	204187501	204187930	+	0	NA	Intergenic	MER41B|LTR|ERV1	250952	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
173670	chr4	14918971	14919550	+	0	NA	intron (NR_038857, intron 7 of 7)	intron (NR_038857, intron 7 of 7)	-31091	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
140471	chr2	233177101	233177700	+	0	NA	intron (NM_001017915, intron 18 of 26).2	intron (NM_001017915, intron 18 of 26).2	-74171	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
82731	chr16	21188651	21189050	+	0	NA	Intergenic	Intergenic	22724	NM_001376232	7783		NM_003460	ENSG00000103310	ZP2	OOMD6|OZEMA6|ZPA|Zp-2	zona pellucida glycoprotein 2	protein-coding
18616	chr1	165851001	165851450	+	0	NA	intron (NM_012474, intron 1 of 6)	intron (NM_012474, intron 1 of 6)	23611	NM_012474	7371		NM_012474	ENSG00000143179	UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
76171	chr15	72965671	72965830	+	0	NA	Intergenic	Intergenic	-86713	NM_002499	4756		NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
191891	chr6	15340571	15341780	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	92320	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
75990	chr15	70558401	70558600	+	0	NA	Intergenic	Intergenic	28106	NR_135691	101929151		NR_135691	ENSG00000280639	LINC02204	-	long intergenic non-protein coding RNA 2204	ncRNA
230972	chr9	129462521	129462800	+	0	NA	Intergenic	Intergenic	-26000	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
181059	chr5	36241051	36243100	+	0	NA	promoter-TSS (NM_001287340)	promoter-TSS (NM_001287340)	-150	NM_001085411	133686		NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding
7135	chr1	32203101	32203750	+	0	NA	intron (NM_001301011, intron 2 of 4)	AluSx1|SINE|Alu	-2246	NM_001160042	55721		NM_018134	ENSG00000160051	IQCC	-	IQ motif containing C	protein-coding
166932	chr3	125120801	125121080	+	0	NA	intron (NM_024628, intron 6 of 13)	intron (NM_024628, intron 6 of 13)	30612	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
209255	chr7	75889221	75889680	+	0	NA	TTS (NM_001040457)	TTS (NM_001040457)	10416	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
193377	chr6	30342701	30343530	+	0	NA	3' UTR (NM_021253, exon 9 of 9).2	3' UTR (NM_021253, exon 9 of 9).2	-2041	NM_024839	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
184989	chr5	113679101	113679250	+	0	NA	Intergenic	Intergenic	165481	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
36720	chr11	9137501	9138300	+	0	NA	TTS (NM_015213)	TTS (NM_015213)	43537	NR_027713	283102		NM_198473	ENSG00000213538	KRT8P41	-	keratin 8 pseudogene 41	pseudo
5569	chr1	25924501	25925030	+	0	NA	Intergenic	L1ME4a|LINE|L1	-17888	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
10253	chr1	64242971	64243130	+	0	NA	intron (NR_158769, intron 7 of 8)	intron (NR_158769, intron 7 of 8)	39427	NM_001366235	148581		NM_152489	ENSG00000177414	UBE2U	-	ubiquitin conjugating enzyme E2 U	protein-coding
76878	chr15	77977201	77977600	+	0	NA	Intergenic	Intergenic	16825	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
1492	chr1	2758651	2758950	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	42068	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
224430	chr9	15297721	15298030	+	0	NA	intron (NM_152574, intron 1 of 19)	MLT2B3|LTR|ERVL	9485	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
196319	chr6	43077451	43077550	+	0	NA	intron (NM_001270398, intron 1 of 19)	intron (NM_001270398, intron 1 of 19)	686	NM_001270398	5754		NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
75965	chr15	70488951	70489050	+	0	NA	Intergenic	MER53|DNA|hAT	16928	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
48374	chr12	9445701	9446280	+	0	NA	intron (NR_033399, intron 1 of 26)	intron (NR_033399, intron 1 of 26)	2182	NR_033399	440081		NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo
189641	chr5	176064351	176064750	+	0	NA	intron (NR_169299, intron 1 of 26)	Tigger2a|DNA|TcMar-Tigger	841	NM_001265615	202134		NM_001079529		FAM153B	-	protein FAM153B	pseudo
125206	chr2	10299901	10300100	+	0	NA	Intergenic	L1MB3|LINE|L1	-2904	NM_002149	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
52173	chr12	54297821	54298380	+	0	NA	intron (NM_001136023, intron 1 of 2)	intron (NM_001136023, intron 1 of 2)	-2321	NM_006163	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
90389	chr17	1287721	1288250	+	0	NA	intron (NM_172367, intron 1 of 2)	intron (NM_172367, intron 1 of 2)	8323	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
60759	chr13	44969901	44970180	+	0	NA	intron (NM_012345, intron 5 of 9)	intron (NM_012345, intron 5 of 9)	19431	NM_012345	26747		NM_012345	ENSG00000083635	NUFIP1	NUFIP|Rsa1|bA540M5.1	nuclear FMR1 interacting protein 1	protein-coding
79856	chr16	1486721	1486980	+	0	NA	intron (NM_001013658, intron 2 of 2)	intron (NM_001013658, intron 2 of 2)	1617	NM_001013658	390667		NM_001013658	ENSG00000251692	PTX4	C16orf38	pentraxin 4	protein-coding
40648	chr11	64731921	64732550	+	0	NA	intron (NM_001098670, intron 12 of 16)	AluSx|SINE|Alu	-9038	NM_001376267	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
49557	chr12	26834871	26835550	+	0	NA	Intergenic	Intergenic	-2016	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
100274	chr17	59622371	59623100	+	0	NA	intron (NM_004859, intron 1 of 31)	intron (NM_004859, intron 1 of 31)	2840	NM_004859	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
217724	chr8	30555801	30556150	+	0	NA	intron (NM_001008711, intron 7 of 9)	intron (NM_001008711, intron 7 of 9)	-82605	NM_001206847	100507341		NM_001206847	ENSG00000253457	SMIM18	-	small integral membrane protein 18	protein-coding
150470	chr21	42561771	42561950	+	0	NA	intron (NM_018964, intron 12 of 20)	intron (NM_018964, intron 12 of 20)	48008	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
112576	chr19	6640271	6640430	+	0	NA	Intergenic	Intergenic	29808	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
109471	chr19	804771	804950	+	0	NA	promoter-TSS (NR_039900)	promoter-TSS (NR_039900)	-80	NR_039900	100616459		NR_039900	ENSG00000284361	MIR4745	mir-4745	microRNA 4745	ncRNA
92960	chr17	17065451	17065950	+	0	NA	intron (NM_015134, intron 1 of 22)	L1MB8|LINE|L1	23243	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
170299	chr3	184331651	184331750	+	0	NA	intron (NM_198244, intron 27 of 29)	intron (NM_198244, intron 27 of 29)	-4226	NM_001366134	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
93274	chr17	18089901	18090630	+	0	NA	intron (NM_001330144, intron 1 of 12)	AluJr|SINE|Alu	2317	NM_001388	1819		NM_001388	ENSG00000108591	DRG2	-	developmentally regulated GTP binding protein 2	protein-coding
48	chr1	203051	203900	+	0	NA	Intergenic	MIR|SINE|MIR	3122	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
126133	chr2	26123771	26124380	+	0	NA	intron (NM_016131, intron 3 of 5)	Tigger2|DNA|TcMar-Tigger	-49013	NM_001168241	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
101129	chr17	65033701	65034280	+	0	NA	intron (NM_001282425, intron 2 of 3)	AluSx4|SINE|Alu	21784	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
231127	chr9	129836311	129837430	+	0	NA	intron (NM_001008563, intron 1 of 25)	intron (NM_001008563, intron 1 of 25)	1412	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
33904	chr10	124544621	124544950	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	82962	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
130079	chr2	74495501	74495700	+	0	NA	Intergenic	Intergenic	4003	NM_001282430	85474		NM_001009812	ENSG00000179528	LBX2	LP3727	ladybird homeobox 2	protein-coding
154748	chr22	36485201	36485650	+	0	NA	Intergenic	AluY|SINE|Alu	-3785	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
200077	chr6	130134051	130134150	+	0	NA	intron (NM_001007102, intron 21 of 21)	intron (NM_001007102, intron 21 of 21)	81785	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
61327	chr13	50512171	50513150	+	0	NA	intron (NR_109974, intron 5 of 6)	intron (NR_109974, intron 5 of 6)	14789	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
217623	chr8	30043121	30043780	+	0	NA	Intergenic	Intergenic	39614	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
92995	chr17	17177151	17177630	+	0	NA	exon (NM_001364716, exon 22 of 24)	exon (NM_001364716, exon 22 of 24)	28943	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
220722	chr8	102043001	102043200	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	58668	NR_126152	104054148		NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
1002	chr1	1848951	1849830	+	0	NA	intron (NM_001282538, intron 1 of 9)	L1MEg|LINE|L1	41697	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
179583	chr4	185340001	185340200	+	0	NA	intron (NM_001378032, intron 12 of 19)	intron (NM_001378032, intron 12 of 19)	38898	NM_018409	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
45633	chr11	118940001	118941280	+	0	NA	Intergenic	Intergenic	-14714	NM_001378213	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
176780	chr4	102500071	102501700	+	0	NA	promoter-TSS (NM_003998)	promoter-TSS (NM_003998)	-474	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
6413	chr1	28055371	28055530	+	0	NA	intron (NR_104214, intron 2 of 16)	intron (NR_104214, intron 2 of 16)	33160	NM_001282560	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
237671	chrX	124342271	124343600	+	0	NA	Intergenic	L2c|LINE|L2	-3347	NM_001114937	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
149274	chr21	26816271	26816430	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	29059	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
183281	chr5	76521071	76521630	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-26059	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
101994	chr17	74764971	74765400	+	0	NA	intron (NM_004252, intron 3 of 5)	intron (NM_004252, intron 3 of 5)	11160	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
182328	chr5	59042351	59043150	+	0	NA	intron (NM_001349242, intron 7 of 16)	intron (NM_001349242, intron 7 of 16)	-3274	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
11106	chr1	86339621	86339880	+	0	NA	Intergenic	MER48|LTR|ERV1	17937	NR_107010	102465842		NR_107010	ENSG00000278281	MIR7856	hsa-mir-7856	microRNA 7856	ncRNA
47291	chr12	1657921	1658250	+	0	NA	Intergenic	Intergenic	2295	NR_037422	100500816		NR_037422	ENSG00000266043	MIR3649	-	microRNA 3649	ncRNA
130373	chr2	85290821	85291830	+	0	NA	intron (NM_031283, intron 4 of 11)	MLT1-int|LTR|ERVL-MaLR	36664	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
835	chr1	1583171	1583880	+	0	NA	Intergenic	Intergenic	-8662	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
54487	chr12	92047071	92047550	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	94403	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
116159	chr19	17393151	17393450	+	0	NA	Intergenic	Intergenic	12330	NM_004335	684		NM_004335	ENSG00000130303	BST2	CD317|HM1.24|TETHERIN	bone marrow stromal cell antigen 2	protein-coding
238993	chrX	155996371	155996530	+	0	NA	Intergenic	Intergenic	-1246	NM_176786	3581		NM_002186	ENSG00000124334	IL9R	CD129|IL-9R	interleukin 9 receptor	protein-coding
73885	chr15	50426471	50426800	+	0	NA	intron (NM_001128610, intron 1 of 19)	MLT1H1|LTR|ERVL-MaLR	2230	NM_005154	9101		NM_005154	ENSG00000138592	USP8	HumORF8|PITA4|SPG59|UBPY	ubiquitin specific peptidase 8	protein-coding
152682	chr22	21616651	21617730	+	0	NA	intron (NR_028436, intron 4 of 4)	intron (NR_028436, intron 4 of 4)	12832	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
12502	chr1	108054351	108054490	+	0	NA	Intergenic	L2c|LINE|L2	-89240	NM_006113	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
172295	chr4	1571501	1571700	+	0	NA	Intergenic	Intergenic	112391	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
167091	chr3	127546551	127548170	+	0	NA	Intergenic	Intergenic	-9580	NR_125397	101927149		NR_125397	ENSG00000239921	LINC01471	-	long intergenic non-protein coding RNA 1471	ncRNA
213842	chr7	141739571	141739730	+	0	NA	intron (NM_001256511, intron 2 of 6)	intron (NM_001256511, intron 2 of 6)	1043	NM_001256510	6742		NM_003143	ENSG00000106028	SSBP1	Mt-SSB|OPA13|SOSS-B1|SSBP|mtSSB	single stranded DNA binding protein 1	protein-coding
144446	chr20	35505951	35506680	+	0	NA	intron (NM_007186, intron 30 of 34)	intron (NM_007186, intron 30 of 34)	23337	NR_026933	140873		NM_080828	ENSG00000125975	C20orf173	dJ477O4.4	chromosome 20 open reading frame 173	protein-coding
237358	chrX	118807371	118807630	+	0	NA	Intergenic	Intergenic	-16324	NM_001312891	170261		NM_173798	ENSG00000174460	ZCCHC12	PNMA7A|SIZN|SIZN1	zinc finger CCHC-type containing 12	protein-coding
132075	chr2	101273471	101273700	+	0	NA	promoter-TSS (NR_003070)	promoter-TSS (NR_003070)	-536	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
110321	chr19	1856601	1857950	+	0	NA	intron (NM_031918, intron 1 of 1)	CpG	6304	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
117749	chr19	29664951	29666580	+	0	NA	intron (NM_024310, intron 1 of 1)	CpG	304	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
37679	chr11	27487351	27487650	+	0	NA	Intergenic	AluSq2|SINE|Alu	-14710	NM_018490	55366		NM_018490	ENSG00000205213	LGR4	BNMD17|DPSL|GPR48	leucine rich repeat containing G protein-coupled receptor 4	protein-coding
58734	chr12	132595271	132595600	+	0	NA	Intergenic	AluJr|SINE|Alu	13438	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
148028	chr20	63173501	63174180	+	0	NA	Intergenic	Intergenic	-4660	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
146744	chr20	50802001	50802400	+	0	NA	intron (NM_198799, intron 1 of 4)	AluJo|SINE|Alu	7139	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
203926	chr7	1529701	1532100	+	0	NA	intron (NM_002360, intron 1 of 2)	CpG	198	NM_002360	7975		NM_002360	ENSG00000198517	MAFK	NFE2U|P18	MAF bZIP transcription factor K	protein-coding
199067	chr6	111617171	111617330	+	0	NA	Intergenic	Tigger19b|DNA|TcMar-Tigger	-10976	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
231292	chr9	130036871	130037500	+	0	NA	intron (NM_001363755, intron 1 of 15)	AluSx1|SINE|Alu	6004	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
147154	chr20	56416351	56416650	+	0	NA	intron (NM_001164114, intron 1 of 5)	intron (NM_001164114, intron 1 of 5)	4240	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
184548	chr5	102754761	102755600	+	0	NA	promoter-TSS (NM_001364587)	promoter-TSS (NM_001364587)	-125	NM_001364592	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
198406	chr6	105981101	105982000	+	0	NA	Intergenic	CpG	-104786	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
204873	chr7	5896971	5897130	+	0	NA	Intergenic	AluJr|SINE|Alu	-1683	NM_015622	51622		NM_015622	ENSG00000122674	CCZ1	C7orf28A|CCZ1A|CGI-43|H_DJ1163J12.2	CCZ1 homolog, vacuolar protein trafficking and biogenesis associated	protein-coding
175011	chr4	52052051	52052150	+	0	NA	intron (NM_001346103, intron 1 of 8)	CpG	796	NM_001346103	132671		NM_145263	ENSG00000163071	SPATA18	Mieap|SPETEX1	spermatogenesis associated 18	protein-coding
3646	chr1	16396651	16396950	+	0	NA	non-coding (NR_073501, exon 5 of 5)	non-coding (NR_073501, exon 5 of 5)	29558	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
45354	chr11	118244621	118245100	+	0	NA	intron (NM_198275, intron 1 of 5)	AluY|SINE|Alu	7505	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
126716	chr2	30176501	30177030	+	0	NA	Intergenic	Intergenic	-10669	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
79391	chr16	659651	659950	+	0	NA	intron (NM_145294, intron 26 of 40)	intron (NM_145294, intron 26 of 40)	-8283	NM_001352287	89941		NM_138769	ENSG00000140983	RHOT2	ARHT2|C16orf39|MIRO-2|MIRO2|RASL	ras homolog family member T2	protein-coding
155223	chr22	37903721	37903980	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2447	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
181353	chr5	40480221	40480880	+	0	NA	Intergenic	Intergenic	-199365	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
155347	chr22	38260071	38261050	+	0	NA	intron (NM_001195072, intron 1 of 9)	MIR|SINE|MIR	12104	NM_001195071	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
47562	chr12	4307721	4308380	+	0	NA	Intergenic	Intergenic	-13163	NM_020375	57103		NM_020375	ENSG00000078237	TIGAR	C12orf5|FR2BP	TP53 induced glycolysis regulatory phosphatase	protein-coding
207175	chr7	43610101	43610800	+	0	NA	intron (NR_135582, intron 6 of 6)	AluSz|SINE|Alu	27342	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
183000	chr5	72304601	72305000	+	0	NA	intron (NM_001286751, intron 2 of 10)	intron (NM_001286751, intron 2 of 10)	15440	NM_001286751	23107		NM_015084	ENSG00000113048	MRPS27	MRP-S27|S27mt|mS27	mitochondrial ribosomal protein S27	protein-coding
89476	chr16	89101551	89102450	+	0	NA	intron (NR_147928, intron 3 of 11)	intron (NR_147928, intron 3 of 11)	8148	NM_001284316	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
193520	chr6	30586401	30586950	+	0	NA	exon (NM_001025091, exon 20 of 25).2	exon (NM_001025091, exon 20 of 25).2	2343	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
168738	chr3	150864901	150865750	+	0	NA	Intergenic	Intergenic	40114	NM_001351281	646951		NM_001351281	ENSG00000214237	MINDY4B	C3orf76|FAM188B2	MINDY family member 4B	protein-coding
171979	chr4	923471	924300	+	0	NA	intron (NM_005255, intron 1 of 27)	L1ME3Cz|LINE|L1	8431	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
201144	chr6	142908601	142908980	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	36386	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
65730	chr14	53117351	53117880	+	0	NA	intron (NM_030637, intron 1 of 11)	L1PA8|LINE|L1	35708	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
196013	chr6	42016071	42016230	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSx|SINE|Alu	32744	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
124414	chr19	58446301	58446530	+	0	NA	Intergenic	Intergenic	-5207	NM_207395	388569		NM_207395	ENSG00000249471	ZNF324B	-	zinc finger protein 324B	protein-coding
138143	chr2	202311701	202312300	+	0	NA	Intergenic	Intergenic	18949	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
59659	chr13	28497421	28497680	+	0	NA	Intergenic	Intergenic	-2422	NM_001160030	2321		NM_002019	ENSG00000102755	FLT1	FLT|FLT-1|VEGFR-1|VEGFR1	fms related receptor tyrosine kinase 1	protein-coding
146643	chr20	50338451	50339880	+	0	NA	Intergenic	Intergenic	-17823	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
83796	chr16	28804951	28805250	+	0	NA	Intergenic	AluY|SINE|Alu	-17948	NM_148414	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
87594	chr16	73154071	73154330	+	0	NA	Intergenic	Intergenic	-9753	NR_163978	463		NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ATFB8|C16orf47|SCA4|ZFH-3|ZNF927	zinc finger homeobox 3	protein-coding
86458	chr16	66933871	66935550	+	0	NA	promoter-TSS (NM_001365408)	promoter-TSS (NM_001365408)	239	NM_003869	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
155841	chr22	39438351	39438680	+	0	NA	Intergenic	HAL1|LINE|L1	6355	NR_040535	100506472		NR_040535		LOC100506472	-	uncharacterized LOC100506472	ncRNA
24900	chr10	1043451	1044230	+	0	NA	non-coding (NR_024628, exon 4 of 4)	non-coding (NR_024628, exon 4 of 4)	5046	NM_001317957	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
198094	chr6	90283171	90283580	+	0	NA	intron (NM_021813, intron 1 of 8)	AluY|SINE|Alu	13468	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
173999	chr4	26320501	26322900	+	0	NA	5' UTR (NM_001363577, exon 1 of 11)	5' UTR (NM_001363577, exon 1 of 11)	472	NM_001363577	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
78585	chr15	93037301	93037580	+	0	NA	3' UTR (NM_001166288, exon 4 of 4)	3' UTR (NM_001166288, exon 4 of 4)	35716	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
888	chr1	1653101	1653300	+	0	NA	intron (NM_033490, intron 3 of 18)	AluSg|SINE|Alu	5804	NM_033487	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
71293	chr14	105292721	105293700	+	0	NA	intron (NM_001242787, intron 1 of 17)	intron (NM_001242787, intron 1 of 17)	-7564	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
37400	chr11	17206521	17206800	+	0	NA	intron (NM_001321378, intron 1 of 33)	intron (NM_001321378, intron 1 of 33)	1326	NM_002645	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
61097	chr13	48427121	48427650	+	0	NA	promoter-TSS (NM_001162497)	promoter-TSS (NM_001162497)	-477	NM_001377317	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
220895	chr8	105524521	105524780	+	0	NA	intron (NM_001362837, intron 3 of 7)	intron (NM_001362837, intron 3 of 7)	205107	NM_001362837	23414		NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding
128940	chr2	64555471	64555900	+	0	NA	intron (NM_001375973, intron 2 of 6)	intron (NM_001375973, intron 2 of 6)	30172	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
37168	chr11	13928771	13928930	+	0	NA	Intergenic	Intergenic	-3987	NR_135052	101928132		NR_135052	ENSG00000254438	LINC02683	-	long intergenic non-protein coding RNA 2683	ncRNA
169189	chr3	156710821	156711080	+	0	NA	Intergenic	Intergenic	34286	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
1039	chr1	1881021	1881400	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	9877	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
130046	chr2	74427401	74427600	+	0	NA	exon (NM_001015055, exon 10 of 12)	exon (NM_001015055, exon 10 of 12)	5770	NM_032118	84058		NM_032118	ENSG00000005448	WDR54	-	WD repeat domain 54	protein-coding
81637	chr16	10887001	10887200	+	0	NA	intron (NM_001379334, intron 1 of 19)	intron (NM_001379334, intron 1 of 19)	8133	NM_001379334	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
31545	chr10	97016721	97017200	+	0	NA	intron (NM_003061, intron 28 of 36)	intron (NM_003061, intron 28 of 36)	-85796	NR_038330	100505540		NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
229083	chr9	114362321	114362730	+	0	NA	exon (NM_001317950, exon 8 of 22)	exon (NM_001317950, exon 8 of 22)	25457	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
8715	chr1	42358801	42359000	+	0	NA	Intergenic	L1M5|LINE|L1	-21892	NM_173642	284716		NM_173642	ENSG00000177181	RIMKLA	FAM80A|NAAGS|NAAGS-II|NAAGS2	ribosomal modification protein rimK like family member A	protein-coding
57836	chr12	123244801	123245100	+	0	NA	intron (NM_001194995, intron 1 of 2)	AluYc|SINE|Alu	11206	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
37861	chr11	33774001	33775600	+	0	NA	promoter-TSS (NM_033406)	promoter-TSS (NM_033406)	101	NR_120550	101928440		NR_120550	ENSG00000254508	FBXO3-DT	FBXO3-AS1	FBXO3 divergent transcript	ncRNA
86810	chr16	67845251	67845350	+	0	NA	intron (NM_025082, intron 1 of 15)	intron (NM_025082, intron 1 of 15)	-1633	NM_001322038	10204		NM_005796	ENSG00000102898	NUTF2	NTF-2|NTF2|PP15	nuclear transport factor 2	protein-coding
70742	chr14	103384601	103387980	+	0	NA	intron (NM_002376, intron 1 of 15)	CpG	875	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
145375	chr20	41175551	41175850	+	0	NA	3' UTR (NM_002660, exon 32 of 32)	3' UTR (NM_002660, exon 32 of 32)	6677	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
754	chr1	1498651	1499150	+	0	NA	Intergenic	LTR10A|LTR|ERV1	-13262	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
29567	chr10	71670771	71670930	+	0	NA	intron (NM_001171931, intron 13 of 24)	intron (NM_001171931, intron 13 of 24)	48928	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
145840	chr20	45842101	45842500	+	0	NA	3' UTR (NM_001042633, exon 5 of 5)	3' UTR (NM_001042633, exon 5 of 5)	8501	NM_001042633	90203		NM_033421	ENSG00000124104	SNX21	C20orf161|PP3993|SNX-L|SNXL|dJ337O18.4	sorting nexin family member 21	protein-coding
19330	chr1	173550601	173551480	+	0	NA	intron (NM_178527, intron 11 of 27)	intron (NM_178527, intron 11 of 27)	52032	NM_178527	284525		NM_178527	ENSG00000162753	SLC9C2	NHE11|SLC9A11	solute carrier family 9 member C2 (putative)	protein-coding
233272	chr9	137299021	137299800	+	0	NA	TTS (NM_001004354)	TTS (NM_001004354)	2861	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
112549	chr19	6540371	6540530	+	0	NA	Intergenic	AluSz|SINE|Alu	9424	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
20000	chr1	185280901	185282300	+	0	NA	intron (NM_017673, intron 18 of 18)	intron (NM_017673, intron 18 of 18)	35643	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
58472	chr12	132141671	132142030	+	0	NA	exon (NM_175066, exon 6 of 15)	exon (NM_175066, exon 6 of 15)	2469	NM_175066	317781		NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding
106212	chr18	11752521	11752780	+	0	NA	intron (NM_001142339, intron 2 of 12)	CpG	565	NM_001369387	2774		NM_002071	ENSG00000141404	GNAL	DYT25|HG1O	G protein subunit alpha L	protein-coding
110827	chr19	2487201	2488350	+	0	NA	Intergenic	Intergenic	11648	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
52008	chr12	53975801	53976680	+	0	NA	3' UTR (NM_014212, exon 2 of 2)	3' UTR (NM_014212, exon 2 of 2)	-1284	NR_047517	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
36838	chr11	10296101	10296300	+	0	NA	Intergenic	L1MB5|LINE|L1	-1993	NM_030962	81846		NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
205354	chr7	13279901	13280150	+	0	NA	Intergenic	Intergenic	592392	NM_005738	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
91340	chr17	4480621	4481930	+	0	NA	intron (NM_001320449, intron 8 of 10)	L2|LINE|L2	-17606	NM_001124758	124976		NM_001124758	ENSG00000183018	SPNS2	DFNB115|SLC62A2|SLC63A2	SPNS lysolipid transporter 2, sphingosine-1-phosphate	protein-coding
166164	chr3	111609851	111611000	+	0	NA	intron (NR_134917, intron 8 of 14)	intron (NR_134917, intron 8 of 14)	-15079	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
82120	chr16	14710771	14711130	+	0	NA	promoter-TSS (NM_001277323)	promoter-TSS (NM_001277323)	-739	NM_001277324	642799		NM_001277324	ENSG00000254852	NPIPA2	NPIP|NPIPA1	nuclear pore complex interacting protein family member A2	protein-coding
106983	chr18	32025471	32026130	+	0	NA	intron (NM_017831, intron 1 of 5)	LTR49-int|LTR|ERV1	6975	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
228190	chr9	97638621	97638950	+	0	NA	intron (NM_001351507, intron 1 of 21)	MER20|DNA|hAT-Charlie	4964	NM_002486	4686		NM_002486	ENSG00000136937	NCBP1	CBP80|NCBP|Sto1	nuclear cap binding protein subunit 1	protein-coding
70308	chr14	101814921	101815350	+	0	NA	intron (NM_178587, intron 1 of 11)	intron (NM_178587, intron 1 of 11)	5272	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
25928	chr10	11329001	11329200	+	0	NA	3' UTR (NM_001326336, exon 14 of 14)	3' UTR (NM_001326336, exon 14 of 14)	15574	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
129219	chr2	68236251	68237200	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	15807	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
56166	chr12	111408151	111408450	+	0	NA	intron (NM_005475, intron 1 of 7)	intron (NM_005475, intron 1 of 7)	2377	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
176852	chr4	102605401	102605800	+	0	NA	intron (NM_001382625, intron 17 of 24)	intron (NM_001382625, intron 17 of 24)	-103114	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
128696	chr2	61535971	61537500	+	0	NA	intron (NM_003400, intron 1 of 24)	intron (NM_003400, intron 1 of 24)	1621	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
151157	chr21	44927201	44928210	+	0	NA	intron (NR_038311, intron 4 of 4)	G-rich|Low_complexity|Low_complexity	1110	NM_001127491	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
185143	chr5	119314701	119315200	+	0	NA	intron (NM_001077654, intron 1 of 1)	AluSx1|SINE|Alu	-18225	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
114329	chr19	12090901	12091480	+	0	NA	Intergenic	Intergenic	-1107	NM_001348163								
103974	chr17	79993551	79994050	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	42072	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
236914	chrX	88208171	88208450	+	0	NA	Intergenic	L1PA2|LINE|L1	-538915	NM_033048	53336		NM_033048	ENSG00000147183	CPXCR1	CT77	CPX chromosome region candidate 1	protein-coding
36131	chr11	3111901	3112700	+	0	NA	intron (NM_145638, intron 6 of 20)	MER4-int|LTR|ERV1	53010	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
110545	chr19	2095601	2098450	+	0	NA	promoter-TSS (NM_130807)	promoter-TSS (NM_130807)	110	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
226364	chr9	70044571	70044730	+	0	NA	exon (NM_001347990, exon 2 of 12)	exon (NM_001347990, exon 2 of 12)	802	NM_153267	256691		NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
225836	chr9	37994801	37995200	+	0	NA	intron (NM_003028, intron 2 of 5)	intron (NM_003028, intron 2 of 5)	74227	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
65828	chr14	54892371	54892530	+	0	NA	intron (NM_001024024, intron 1 of 6)	AluSx1|SINE|Alu	10374	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
79021	chr16	61571	62130	+	0	NA	exon (NM_022450, exon 8 of 18)	exon (NM_022450, exon 8 of 18)	8022	NM_024571	79622		NM_024571	ENSG00000161981	SNRNP25	C16orf33	small nuclear ribonucleoprotein U11/U12 subunit 25	protein-coding
185392	chr5	128090751	128091050	+	0	NA	intron (NR_046207, intron 1 of 26)	L2a|LINE|L2	7134	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
171946	chr4	886971	887650	+	0	NA	intron (NM_001318134, intron 8 of 24)	(GCACAC)n|Simple_repeat|Simple_repeat	45006	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
63384	chr13	114060471	114060630	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	17405	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
14566	chr1	145015921	145016830	+	0	NA	intron (NM_001385227, intron 2 of 8)	intron (NM_001385227, intron 2 of 8)	-77921	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
93754	chr17	19955021	19955480	+	0	NA	intron (NM_007202, intron 4 of 14)	AluSz|SINE|Alu	22578	NM_007202	11216		NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A-kinase anchoring protein 10	protein-coding
97556	chr17	44079771	44080680	+	0	NA	exon (NM_001015053, exon 23 of 27)	exon (NM_001015053, exon 23 of 27)	9314	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
225511	chr9	35697501	35697700	+	0	NA	3' UTR (NM_006289, exon 57 of 57)	3' UTR (NM_006289, exon 57 of 57)	-7544	NM_001301227	7169		NM_003289	ENSG00000198467	TPM2	AMCD1|CMYP23|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB	tropomyosin 2	protein-coding
55234	chr12	101838451	101839080	+	0	NA	Intergenic	Intergenic	-7806	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
99949	chr17	57356401	57356800	+	0	NA	intron (NM_170721, intron 4 of 9)	intron (NM_170721, intron 4 of 9)	99581	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
17875	chr1	160030871	160032500	+	0	NA	exon (NM_145167, exon 1 of 1)	exon (NM_145167, exon 1 of 1)	305	NM_145167	93183		NM_145167	ENSG00000143315	PIGM	GPI-MT-I	phosphatidylinositol glycan anchor biosynthesis class M	protein-coding
121465	chr19	47066551	47067050	+	0	NA	exon (NM_015168, exon 15 of 15)	exon (NM_015168, exon 15 of 15)	-18176	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
136930	chr2	189874921	189875180	+	0	NA	intron (NM_001321044, intron 10 of 10)	L2|LINE|L2	90600	NM_001128143	5378		NM_000534	ENSG00000064933	PMS1	HNPCC3|MLH2|PMSL1|hPMS1	PMS1 homolog 1, mismatch repair system component	protein-coding
55452	chr12	104602621	104603080	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	11217	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
103038	chr17	77109901	77110550	+	0	NA	intron (NM_001204410, intron 3 of 18)	intron (NM_001204410, intron 3 of 18)	20808	NR_106997	102466864		NR_106997	ENSG00000284250	MIR6516	hsa-mir-6516	microRNA 6516	ncRNA
128668	chr2	61459521	61459780	+	0	NA	intron (NM_014709, intron 1 of 79)	AluSx1|SINE|Alu	11437	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
105702	chr18	2684451	2684750	+	0	NA	intron (NM_015295, intron 5 of 47)	L1MEc|LINE|L1	28874	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
174291	chr4	38415601	38415800	+	0	NA	Intergenic	Intergenic	48786	NR_149123	105374410		NR_149123	ENSG00000248227	LINC02513	-	long intergenic non-protein coding RNA 2513	ncRNA
30444	chr10	79068501	79069690	+	0	NA	5' UTR (NM_020338, exon 1 of 25)	5' UTR (NM_020338, exon 1 of 25)	129	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
115425	chr19	15305971	15306600	+	0	NA	intron (NM_001379291, intron 1 of 19)	Tigger1|DNA|TcMar-Tigger	-25834	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
61129	chr13	48534201	48534500	+	0	NA	intron (NM_001352429, intron 1 of 11)	MIRb|SINE|MIR	-1094	NM_001352430	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
114023	chr19	10919701	10920280	+	0	NA	intron (NM_001370089, intron 10 of 14)	intron (NM_001370089, intron 10 of 14)	8649	NM_024029	78992		NM_024029	ENSG00000130733	YIPF2	FinGER2|YIPFbeta3B|Yip5C	Yip1 domain family member 2	protein-coding
65121	chr14	44916051	44916600	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-4408	NR_110050	101927418		NR_110050	ENSG00000258949	LOC101927418	-	uncharacterized LOC101927418	ncRNA
134071	chr2	131513051	131513350	+	0	NA	intron (NR_026922, intron 10 of 17)	intron (NR_026922, intron 10 of 17)	-14475	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
157328	chr22	44627601	44627800	+	0	NA	Intergenic	Intergenic	-2281	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
123747	chr19	55072071	55072630	+	0	NA	Intergenic	AluJr|SINE|Alu	-2830	NM_138412	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
168390	chr3	142027651	142027980	+	0	NA	intron (NM_001375776, intron 3 of 13)	intron (NM_001375776, intron 3 of 13)	811	NM_001375756	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
187682	chr5	143313501	143313900	+	0	NA	intron (NM_001204265, intron 3 of 6)	intron (NM_001204265, intron 3 of 6)	89583	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
160018	chr3	18405221	18405880	+	0	NA	intron (NM_001322873, intron 5 of 10)	intron (NM_001322873, intron 5 of 10)	19789	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
84642	chr16	30718251	30718730	+	0	NA	intron (NM_006662, intron 18 of 33)	AluSx|SINE|Alu	7953	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
64461	chr14	24246371	24247530	+	0	NA	Intergenic	L1MCa|LINE|L1	-4276	NM_012461	26277		NM_012461	ENSG00000092330	TINF2	DKCA3|TIN2	TERF1 interacting nuclear factor 2	protein-coding
68230	chr14	76946101	76946300	+	0	NA	Intergenic	FRAM|SINE|Alu	-13438	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
69404	chr14	94052771	94053130	+	0	NA	intron (NM_020414, intron 8 of 8).2	intron (NM_020414, intron 8 of 8).2	26610	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
38467	chr11	45771001	45773000	+	0	NA	non-coding (NR_027134, exon 2 of 2)	non-coding (NR_027134, exon 2 of 2)	568	NR_027134	374387		NM_199137		LINC02716	DKFZp779M0652	long intergenic non-protein coding RNA 2716	ncRNA
25364	chr10	6410001	6411200	+	0	NA	intron (NM_001323267, intron 17 of 17)	MER20B|DNA|hAT-Charlie	60284	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
180981	chr5	35793251	35793550	+	0	NA	intron (NM_024867, intron 32 of 36)	intron (NM_024867, intron 32 of 36)	-63491	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
222899	chr8	142791001	142791200	+	0	NA	Intergenic	Intergenic	-4561	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
112988	chr19	7878871	7879330	+	0	NA	non-coding (NR_033250, exon 1 of 1)	non-coding (NR_033250, exon 1 of 1)	1132	NR_033250	388499		NR_033250		LYPLA2P2	-	LYPLA2 pseudogene 2	pseudo
206382	chr7	30726351	30727980	+	0	NA	Intergenic	Intergenic	-24970	NM_006774	11185		NM_006774	ENSG00000241644	INMT	TEMT	indolethylamine N-methyltransferase	protein-coding
173124	chr4	6579051	6579750	+	0	NA	intron (NM_015274, intron 3 of 18)	(CCATCA)n|Simple_repeat|Simple_repeat	4211	NM_001292038	23324		NM_015274	ENSG00000013288	MAN2B2	EpMAN	mannosidase alpha class 2B member 2	protein-coding
214344	chr7	149476401	149476750	+	0	NA	intron (NM_001163474, intron 6 of 6)	intron (NM_001163474, intron 6 of 6)	-15513	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
11288	chr1	89256971	89257500	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	15625	NM_001134486	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
191397	chr6	8063821	8065180	+	0	NA	promoter-TSS (NM_201280)	promoter-TSS (NM_201280)	-86	NM_001199323	63915		NM_201280	ENSG00000188428	BLOC1S5	BLOS5|HPS11|MU|MUTED	biogenesis of lysosomal organelles complex 1 subunit 5	protein-coding
90187	chr17	383321	383580	+	0	NA	Intergenic	MIRb|SINE|MIR	-26875	NM_001013672	400566		NM_001013672	ENSG00000187624	LIAT1	C17orf97|CK20	ligand of ATE1	protein-coding
27552	chr10	32341371	32341900	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	5523	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
40426	chr11	64181551	64182300	+	0	NA	Intergenic	Intergenic	-3347	NM_001282652	10963		NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
64800	chr14	34876451	34876550	+	0	NA	TTS (NR_160776)	TTS (NR_160776)	-1140	NM_013448	11177		NM_013448	ENSG00000198604	BAZ1A	ACF1|WALp1|WCRF180|hACF1	bromodomain adjacent to zinc finger domain 1A	protein-coding
212524	chr7	128832551	128833580	+	0	NA	intron (NM_001458, intron 1 of 47)	intron (NM_001458, intron 1 of 47)	2659	NM_001127487	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
200226	chr6	131524451	131525080	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-48461	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
77639	chr15	85483021	85483280	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	102547	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
117776	chr19	29713771	29715900	+	0	NA	intron (NM_001256047, intron 1 of 2)	(CACCC)n|Simple_repeat|Simple_repeat	221	NM_001282929	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
235253	chrX	41612771	41613000	+	0	NA	intron (NM_001126055, intron 10 of 24)	SVA_D|Retroposon|SVA	-76088	NM_005300	2857		NM_005300	ENSG00000171659	GPR34	LPS1|LYPSR1	G protein-coupled receptor 34	protein-coding
166505	chr3	114320351	114320450	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-3831	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
60279	chr13	40619871	40620230	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	46591	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
175884	chr4	80064521	80064780	+	0	NA	intron (NM_001145794, intron 3 of 15)	L2b|LINE|L2	8579	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
144479	chr20	35617501	35618180	+	0	NA	exon (NM_003116, exon 4 of 12)	exon (NM_003116, exon 4 of 12)	1956	NM_001317931	6676		NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
172413	chr4	1802851	1803150	+	0	NA	non-coding (NR_148971, exon 8 of 19)	non-coding (NR_148971, exon 8 of 19)	9688	NM_001163213	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
27044	chr10	27104171	27104330	+	0	NA	Intergenic	AluSz|SINE|Alu	-3756	NM_001256053	22852		NM_014915	ENSG00000107890	ANKRD26	THC2|bA145E8.1	ankyrin repeat domain containing 26	protein-coding
225497	chr9	35655971	35656630	+	0	NA	Intergenic	MIRb|SINE|MIR	1718	NR_003051	6023		NR_003051	ENSG00000277027	RMRP	CHH|NME1|RMRPR|RRP2	RNA component of mitochondrial RNA processing endoribonuclease	ncRNA
193871	chr6	31574621	31574880	+	0	NA	promoter-TSS (NM_000594).6	promoter-TSS (NM_000594).6	-815	NM_000594	7124		NM_000594	ENSG00000232810	TNF	DIF|TNF-alpha|TNFA|TNFSF2|TNLG1F	tumor necrosis factor	protein-coding
171690	chr3	197776621	197777080	+	0	NA	intron (NR_027840, intron 6 of 8)	intron (NR_027840, intron 6 of 8)	-14376	NM_001363887	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
121572	chr19	47269401	47269950	+	0	NA	intron (NM_015603, intron 8 of 11)	L2a|LINE|L2	-4748	NR_037675	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
229389	chr9	121170351	121170650	+	0	NA	intron (NM_001369892, intron 28 of 31)	AluSg|SINE|Alu	-30983	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
15931	chr1	151814701	151814900	+	0	NA	intron (NM_005060, intron 5 of 10)	intron (NM_005060, intron 5 of 10)	-9381	NM_001004432	339398		NM_001004432	ENSG00000213171	LINGO4	DAAT9248|LRRN6D|PRO34002	leucine rich repeat and Ig domain containing 4	protein-coding
11939	chr1	93814021	93814300	+	0	NA	intron (NM_001261408, intron 2 of 13)	intron (NM_001261408, intron 2 of 13)	-32672	NR_030621	100126348		NR_030621	ENSG00000211575	MIR760	MIRN760|hsa-mir-760|mir-760	microRNA 760	ncRNA
10773	chr1	77308951	77309450	+	0	NA	intron (NM_174858, intron 5 of 13)	L1PA10|LINE|L1	26113	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
163638	chr3	52071071	52071500	+	0	NA	Intergenic	Intergenic	-6173	NR_027331	100128378		NM_001123039		LINC00696	C3orf74	long intergenic non-protein coding RNA 696	ncRNA
103292	chr17	77845321	77845580	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	38637	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
97752	chr17	44426571	44426930	+	0	NA	intron (NM_001304940, intron 7 of 9)	L1M7|LINE|L1	10101	NM_001304943	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
31458	chr10	96287721	96288180	+	0	NA	Intergenic	Intergenic	-16374	NM_001114094	29760		NM_013314	ENSG00000095585	BLNK	AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca	B cell linker	protein-coding
131926	chr2	98911371	98912550	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	24265	NM_207362	343990		NM_207362	ENSG00000196872	CRACDL	C2orf55|KIAA1211L	CRACD like	protein-coding
67382	chr14	69776001	69777930	+	0	NA	intron (NM_003049, intron 4 of 4)	intron (NM_003049, intron 4 of 4)	-9252	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
14762	chr1	146027151	146027450	+	0	NA	Intergenic	AluY|SINE|Alu	-5565	NM_145277	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
229555	chr9	122932601	122932980	+	0	NA	Intergenic	AluSp|SINE|Alu	-1278	NM_020924	57684		NM_020924	ENSG00000171448	ZBTB26	ZNF481|bioref	zinc finger and BTB domain containing 26	protein-coding
184710	chr5	109354821	109355380	+	0	NA	intron (NM_014819, intron 7 of 9)	AluJr|SINE|Alu	-28731	NR_149040	285638		NR_149040	ENSG00000249476	LOC285638	-	uncharacterized LOC285638	ncRNA
100618	chr17	63552771	63552930	+	0	NA	intron (NR_073585, intron 1 of 7)	intron (NR_073585, intron 1 of 7)	2373	NR_073585	10238		NM_005828	ENSG00000136485	DCAF7	AN11|HAN11|SWAN-1|WDR68	DDB1 and CUL4 associated factor 7	protein-coding
17020	chr1	156054401	156055850	+	0	NA	intron (NM_001145264, intron 1 of 2)	intron (NM_001145264, intron 1 of 2)	343	NM_001145264	28956		NM_014017	ENSG00000116586	LAMTOR2	ENDAP|HSPC003|MAPBPIP|MAPKSP1AP|ROBLD3|Ragulator2|p14	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding
95640	chr17	37815671	37815830	+	0	NA	Intergenic	Intergenic	68993	NR_024178	284100		NM_001129906	ENSG00000290810	YWHAEP7	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7	pseudo
73700	chr15	45112321	45113780	+	0	NA	exon (NM_014080, exon 3 of 34)	exon (NM_014080, exon 3 of 34)	1111	NM_014080	50506		NM_014080	ENSG00000140279	DUOX2	LNOX2|NOXEF2|P138-TOX|TDH6|THOX2	dual oxidase 2	protein-coding
93046	chr17	17383851	17383950	+	0	NA	Intergenic	CpG	80527	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
105506	chr17	83100651	83102300	+	0	NA	Intergenic	Intergenic	20329	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
8146	chr1	39394601	39395600	+	0	NA	intron (NM_012090, intron 52 of 92)	intron (NM_012090, intron 52 of 92)	-13973	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
67518	chr14	70987801	70988000	+	0	NA	intron (NM_001308160, intron 6 of 33)	intron (NM_001308160, intron 6 of 33)	80441	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
5102	chr1	24849771	24850200	+	0	NA	Intergenic	Intergenic	69431	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
12223	chr1	100407671	100407830	+	0	NA	intron (NM_001319210, intron 4 of 16)	L1PA11|LINE|L1	55244	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
155368	chr22	38292771	38292930	+	0	NA	intron (NM_152221, intron 10 of 10)	intron (NM_152221, intron 10 of 10)	-19840	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
117465	chr19	19712571	19712730	+	0	NA	exon (NM_021030, exon 4 of 4)	exon (NM_021030, exon 4 of 4)	20462	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
120574	chr19	44995971	44996130	+	0	NA	Intergenic	AluJr4|SINE|Alu	-5414	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
168529	chr3	144008651	144008750	+	0	NA	Intergenic	Alu|SINE|Alu	35619	NM_001134470	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
147715	chr20	62368051	62368380	+	0	NA	promoter-TSS (NM_005560)	promoter-TSS (NM_005560)	-903	NM_005560	3911		NM_005560	ENSG00000130702	LAMA5	BBDS2|NPHS26	laminin subunit alpha 5	protein-coding
100485	chr17	61636001	61636200	+	0	NA	Intergenic	L1MA4|LINE|L1	-44881	NM_199290	342538		NM_199290	ENSG00000253506	NACA2	ANAC|NACAL	nascent polypeptide associated complex subunit alpha 2	protein-coding
233994	chrX	2926821	2927080	+	0	NA	intron (NM_009589, intron 1 of 6)	intron (NM_009589, intron 1 of 6)	2389	NM_009589	414		NM_001669	ENSG00000006756	ARSD	ASD	arylsulfatase D	protein-coding
216860	chr8	22618351	22618780	+	0	NA	intron (NM_021174, intron 17 of 20)	intron (NM_021174, intron 17 of 20)	13523	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
62729	chr13	105370451	105370550	+	0	NA	Intergenic	Intergenic	-95367	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
23554	chr1	229326001	229326200	+	0	NA	intron (NM_145257, intron 3 of 3)	intron (NM_145257, intron 3 of 3)	16947	NM_145257	126731		NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
27756	chr10	35210001	35210200	+	0	NA	3' UTR (NM_001267569, exon 4 of 4)	3' UTR (NM_001267569, exon 4 of 4)	14198	NM_182724	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
35794	chr11	2192551	2192850	+	0	NA	Intergenic	Intergenic	19637	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
195156	chr6	35731071	35733030	+	0	NA	intron (NR_027117, intron 5 of 9)	CpG-23543	-3467	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
176919	chr4	102812871	102813780	+	0	NA	intron (NM_181893, intron 1 of 6)	7SLRNA|srpRNA|srpRNA	12535	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
191073	chr6	3449301	3449500	+	0	NA	intron (NM_001286456, intron 1 of 3)	L1MD|LINE|L1	-4387	NM_021945	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
184567	chr5	102779971	102781080	+	0	NA	intron (NM_001364588, intron 1 of 24)	MER20B|DNA|hAT-Charlie	25220	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
41215	chr11	65662401	65665150	+	0	NA	promoter-TSS (NM_001243985)	promoter-TSS (NM_001243985)	-803	NM_001243985	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
173977	chr4	26130951	26131350	+	0	NA	Intergenic	Charlie29a|DNA|hAT-Charlie	-32308	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
133144	chr2	112675971	112676330	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	30211	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
199048	chr6	111479551	111479800	+	0	NA	intron (NM_001286432, intron 2 of 33)	AluJo|SINE|Alu	3543	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
149618	chr21	33386221	33386500	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-16536	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
117572	chr19	21360001	21360200	+	0	NA	intron (NM_001355237, intron 1 of 4)	MER57E3|LTR|ERV1	1100	NM_001355237	148203		NM_001355237	ENSG00000172687	ZNF738	-	zinc finger protein 738	protein-coding
230788	chr9	128942471	128943680	+	0	NA	Intergenic	AluSg7|SINE|Alu	4528	NM_014908	22845		NM_014908	ENSG00000175283	DOLK	CDG1M|DK|DK1|SEC59|TMEM15	dolichol kinase	protein-coding
51253	chr12	51023801	51025310	+	0	NA	intron (NM_001174125, intron 1 of 15)	AluSq2|SINE|Alu	1586	NM_001174129	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
224375	chr9	7974601	7975030	+	0	NA	Intergenic	Intergenic	-175037	NM_001318059	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
1205	chr1	2255191	2256980	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	27766	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
182263	chr5	57197271	57197430	+	0	NA	intron (NM_001331037, intron 2 of 12)	intron (NM_001331037, intron 2 of 12)	-16724	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
85337	chr16	50156651	50157230	+	0	NA	intron (NM_001040284, intron 2 of 12)	AluJr|SINE|Alu	3634	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
152033	chr22	19458451	19458550	+	0	NA	intron (NM_005659, intron 6 of 11)	AluSx|SINE|Alu	-10789	NM_173793	128977		NM_173793	ENSG00000242259	C22orf39	Pants	chromosome 22 open reading frame 39	protein-coding
23042	chr1	226549501	226549730	+	0	NA	intron (NM_001003665, intron 1 of 3)	CpG	851	NM_001003665	375057		NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
224840	chr9	27528931	27529200	+	0	NA	intron (NM_024761, intron 1 of 3)	CpG	749	NM_024761	79817		NM_024761	ENSG00000120162	MOB3B	C9orf35|MOB1D|MOBKL2B	MOB kinase activator 3B	protein-coding
76924	chr15	78054771	78055700	+	0	NA	intron (NM_144572, intron 1 of 12)	L1ME1|LINE|L1	22417	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
149485	chr21	32278501	32279750	+	0	NA	promoter-TSS (NM_018944)	promoter-TSS (NM_018944)	-76	NM_018944	54069		NM_018944	ENSG00000159055	MIS18A	B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha	MIS18 kinetochore protein A	protein-coding
150335	chr21	42107701	42108500	+	0	NA	intron (NM_173568, intron 9 of 21)	intron (NM_173568, intron 9 of 21)	434	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
121776	chr19	47770671	47771230	+	0	NA	Intergenic	AluSx|SINE|Alu	-2110	NR_132382	106144593		NR_132382	ENSG00000269656	NOP53-AS1	GLTSCR2-AS1	NOP53 antisense RNA 1	ncRNA
215286	chr7	157228871	157229100	+	0	NA	intron (NM_014671, intron 17 of 22)	intron (NM_014671, intron 17 of 22)	90059	NM_014671	9690		NM_014671	ENSG00000009335	UBE3C	HECTH2|NDSMBA|NEDSMBA|RAUL	ubiquitin protein ligase E3C	protein-coding
72645	chr15	38494351	38494850	+	0	NA	exon (NM_005739, exon 16 of 17)	exon (NM_005739, exon 16 of 17)	40473	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
21664	chr1	206694851	206695350	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	10195	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
89534	chr16	89191021	89191300	+	0	NA	intron (NM_004933, intron 8 of 13)	(GT)n|Simple_repeat|Simple_repeat	9377	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
3394	chr1	15736601	15737900	+	0	NA	intron (NM_207348, intron 1 of 4)	intron (NM_207348, intron 1 of 4)	992	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
92462	chr17	8487751	8488800	+	0	NA	intron (NM_005964, intron 33 of 40)	intron (NM_005964, intron 33 of 40)	52391	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
191379	chr6	7391471	7391630	+	0	NA	intron (NM_031480, intron 1 of 16)	intron (NM_031480, intron 1 of 16)	1721	NM_001348194	83732		NM_031480	ENSG00000124784	RIOK1	AD034|RIO1|RRP10|bA288G3.1	RIO kinase 1	protein-coding
148269	chr20	63687821	63688430	+	0	NA	intron (NM_032957, intron 18 of 34)	intron (NM_032957, intron 18 of 34)	-8527	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
222877	chr8	142771401	142771600	+	0	NA	3' UTR (NM_001356370, exon 4 of 4)	3' UTR (NM_001356370, exon 4 of 4)	-1672	NM_001356372	432355		NM_177458	ENSG00000283992	SLURP2	SLURP-2	secreted LY6/PLAUR domain containing 2	protein-coding
66686	chr14	64038271	64038430	+	0	NA	intron (NM_015180, intron 45 of 114)	SVA_D|Retroposon|SVA	56775	NR_031677	100313830		NR_031677	ENSG00000221537	MIR548H1	MIR548H-1|MIRN548H1	microRNA 548h-1	ncRNA
219161	chr8	66466701	66467100	+	0	NA	intron (NM_144650, intron 13 of 13)	L2a|LINE|L2	-26666	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
144497	chr20	35662471	35662880	+	0	NA	intron (NM_001198838, intron 1 of 2)	intron (NM_001198838, intron 1 of 2)	2225	NR_037188	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
77331	chr15	82515801	82516430	+	0	NA	Intergenic	Intergenic	-2116	NR_103496	80154		NM_025084		GOLGA2P10	-	GOLGA2 pseudogene 10	pseudo
154767	chr22	36517551	36517650	+	0	NA	intron (NR_156418, intron 9 of 14)	intron (NR_156418, intron 9 of 14)	-10560	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
70546	chr14	102526191	102527030	+	0	NA	Intergenic	Intergenic	-13034	NR_036192	100422954		NR_036192	ENSG00000266015	MIR4309	-	microRNA 4309	ncRNA
239336	chrY	19140521	19140780	+	0	NA	Intergenic	LTR12F|LTR|ERV1	-63103	NR_001543	83869		NM_031932	ENSG00000176728	TTTY14	CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14	testis expressed transcript, Y-linked 14	ncRNA
40847	chr11	65043701	65044880	+	0	NA	TTS (NM_005468)	TTS (NM_005468)	3080	NM_013299	29901		NM_013299	ENSG00000168061	SAC3D1	HSU79266|SHD1	SAC3 domain containing 1	protein-coding
80411	chr16	2605971	2606130	+	0	NA	intron (NR_015441, intron 1 of 3)	AluSx|SINE|Alu	2666	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
183057	chr5	73453121	73453580	+	0	NA	TTS (NR_126410)	TTS (NR_126410)	-4573	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
76677	chr15	75721171	75721680	+	0	NA	Intergenic	Intergenic	-2616	NM_175881	161753		NM_175881	ENSG00000182950	CIMAP1C	ODF3L1	ciliary microtubule associated protein 1C	protein-coding
152339	chr22	20425351	20426280	+	0	NA	exon (NM_153334, exon 11 of 11)	exon (NM_153334, exon 11 of 11)	12010	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
170026	chr3	181231751	181231850	+	0	NA	promoter-TSS (NR_004394).9	promoter-TSS (NR_004394).9	63	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
225479	chr9	35615271	35615430	+	0	NA	intron (NM_001782, intron 5 of 8)	intron (NM_001782, intron 5 of 8)	3063	NM_001782	971		NM_001782	ENSG00000137101	CD72	CD72b|LYB2	CD72 molecule	protein-coding
161456	chr3	42173251	42173550	+	0	NA	intron (NM_014965, intron 1 of 12)	intron (NM_014965, intron 1 of 12)	13207	NM_014965	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
164175	chr3	56794121	56794750	+	0	NA	intron (NM_001289698, intron 2 of 10)	AluSq|SINE|Alu	7514	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
48864	chr12	12437951	12438450	+	0	NA	intron (NM_058169, intron 3 of 3)	AluSx4|SINE|Alu	81122	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
76368	chr15	74597971	74599080	+	0	NA	TTS (NM_001307939)	TTS (NM_001307939)	-9847	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
3863	chr1	16971221	16971480	+	0	NA	intron (NM_014675, intron 35 of 36)	intron (NM_014675, intron 35 of 36)	9270	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
50106	chr12	44863501	44864630	+	0	NA	intron (NM_001145108, intron 2 of 19)	L1M1|LINE|L1	11596	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
144511	chr20	35695401	35695600	+	0	NA	intron (NR_037570, intron 4 of 13)	intron (NR_037570, intron 4 of 13)	3852	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
26095	chr10	13275951	13276050	+	0	NA	Intergenic	Intergenic	23746	NM_001037537	5264		NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
81720	chr16	11263671	11264900	+	0	NA	Intergenic	Intergenic	5040	NM_005425	7142		NM_005425	ENSG00000178279	TNP2	TP2	transition protein 2	protein-coding
167873	chr3	134600801	134601250	+	0	NA	3' UTR (NM_001350859, exon 10 of 10)	3' UTR (NM_001350859, exon 10 of 10)	49993	NM_001366276	339855		NM_178554	ENSG00000174611	KY	MFM7	kyphoscoliosis peptidase	protein-coding
235889	chrX	52271271	52271450	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	65282	NR_107055	102466880		NR_107055	ENSG00000275335	MIR8088	hsa-mir-8088	microRNA 8088	ncRNA
144836	chr20	36861871	36862230	+	0	NA	intron (NM_080627, intron 1 of 14)	intron (NM_080627, intron 1 of 14)	1488	NM_080627	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
105887	chr18	3265951	3266480	+	0	NA	intron (NM_001144945, intron 1 of 3)	MLT1F|LTR|ERVL-MaLR	3496	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
213432	chr7	138462151	138462700	+	0	NA	intron (NM_015905, intron 1 of 18)	AluY|SINE|Alu	2166	NM_003852	8805		NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
157686	chr22	46299671	46300230	+	0	NA	intron (NM_016426, intron 2 of 11)	AluSc8|SINE|Alu	3080	NM_016426	51512		NM_016426	ENSG00000075218	GTSE1	B99	G2 and S-phase expressed 1	protein-coding
75492	chr15	66355521	66355840	+	0	NA	intron (NM_001289986, intron 1 of 6)	AluSx3|SINE|Alu	1005	NM_017858	54962		NM_017858	ENSG00000075131	TIPIN	-	TIMELESS interacting protein	protein-coding
22466	chr1	221699471	221699630	+	0	NA	Intergenic	Intergenic	37350	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
26060	chr10	12656101	12656700	+	0	NA	intron (NM_153498, intron 2 of 10)	AluJb|SINE|Alu	-3203	NR_039701	100616320		NR_039701	ENSG00000283699	MIR4481	-	microRNA 4481	ncRNA
115316	chr19	14888571	14889050	+	0	NA	Intergenic	LTR13_|LTR|ERVK	-7455	NM_030901	26333		NM_030901	ENSG00000185385	OR7A17	BC85395_4|HTPCRX19	olfactory receptor family 7 subfamily A member 17	protein-coding
155396	chr22	38325801	38326000	+	0	NA	intron (NM_001289912, intron 5 of 14)	intron (NM_001289912, intron 5 of 14)	-7816	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
88923	chr16	87823321	87823800	+	0	NA	Intergenic	Intergenic	11100	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
103127	chr17	77386971	77387150	+	0	NA	intron (NM_001113494, intron 1 of 10)	intron (NM_001113494, intron 1 of 10)	9994	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
178770	chr4	153426171	153427380	+	0	NA	Intergenic	Intergenic	-39571	NM_015196	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
233129	chr9	137147221	137147480	+	0	NA	intron (NM_007327, intron 3 of 19)	intron (NM_007327, intron 3 of 19)	8196	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
85906	chr16	57075821	57076080	+	0	NA	intron (NM_001384960, intron 37 of 45)	AluSz|SINE|Alu	-16633	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
49231	chr12	19236771	19236950	+	0	NA	intron (NM_001256787, intron 1 of 25)	intron (NM_001256787, intron 1 of 25)	31535	NM_001256787	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
99767	chr17	51085301	51085900	+	0	NA	intron (NM_001130527, intron 1 of 29)	intron (NM_001130527, intron 1 of 29)	35268	NM_001130527	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
88892	chr16	87754371	87755450	+	0	NA	intron (NM_001351937, intron 4 of 11)	intron (NM_001351937, intron 4 of 11)	11076	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
102489	chr17	75749671	75751250	+	0	NA	intron (NM_001005619, intron 27 of 38)	intron (NM_001005619, intron 27 of 38)	14732	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
232487	chr9	136251221	136251750	+	0	NA	3' UTR (NM_001378188, exon 26 of 26)	3' UTR (NM_001378188, exon 26 of 26)	-5673	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
154510	chr22	35894601	35895000	+	0	NA	intron (NM_001349999, intron 2 of 13)	intron (NM_001349999, intron 2 of 13)	-54336	NM_014309	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
114590	chr19	12940051	12941630	+	0	NA	TTS (NR_106770)	TTS (NR_106770)	356	NR_106770	102466659		NR_106770	ENSG00000274417	MIR6515	hsa-mir-6515|mir-6515	microRNA 6515	ncRNA
204091	chr7	2110451	2110950	+	0	NA	intron (NM_001304524, intron 9 of 16)	L3|LINE|CR1	-21648	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
82577	chr16	18784901	18785200	+	0	NA	intron (NM_001019, intron 3 of 4)	intron (NM_001019, intron 3 of 4)	5284	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
149992	chr21	36968121	36968380	+	0	NA	intron (NR_148020, intron 1 of 10)	AluJr|SINE|Alu	-1581	NM_001352514	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
105381	chr17	82708651	82710180	+	0	NA	Intergenic	Intergenic	6838	NR_136400	101929552		NR_136400	ENSG00000263063	LOC101929552	-	uncharacterized LOC101929552	ncRNA
170277	chr3	184305521	184306730	+	0	NA	exon (NM_001278708, exon 12 of 19)	exon (NM_001278708, exon 12 of 19)	5544	NM_001278709	5708		NM_002808	ENSG00000175166	PSMD2	P97|RPN1|S2|TRAP2	proteasome 26S subunit ubiquitin receptor, non-ATPase 2	protein-coding
239491	chrY	56750571	56751000	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-203470	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
6944	chr1	31748321	31748580	+	0	NA	intron (NM_001294336, intron 4 of 31)	intron (NM_001294336, intron 4 of 31)	10285	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
121749	chr19	47748621	47749300	+	0	NA	intron (NM_015710, intron 2 of 12)	AluSp|SINE|Alu	3414	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
130097	chr2	74514621	74515250	+	0	NA	exon (NM_016170, exon 1 of 3)	exon (NM_016170, exon 1 of 3)	485	NM_016170	3196		NM_001534	ENSG00000115297	TLX2	HOX11L1|NCX	T cell leukemia homeobox 2	protein-coding
12706	chr1	109495771	109496080	+	0	NA	exon (NM_001134400, exon 3 of 3)	exon (NM_001134400, exon 3 of 3)	1831	NM_182580	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
34550	chr10	133101001	133101230	+	0	NA	intron (NM_001083909, intron 4 of 6)	intron (NM_001083909, intron 4 of 6)	-1131	NM_001291085	84435		NM_032422	ENSG00000197177	ADGRA1	GPR123	adhesion G protein-coupled receptor A1	protein-coding
200099	chr6	130192771	130193300	+	0	NA	intron (NM_001258275, intron 7 of 13)	HERVH-int|LTR|ERV1	22850	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
151100	chr21	44853171	44853530	+	0	NA	intron (NM_001286822, intron 2 of 2)	AluY|SINE|Alu	20340	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
231038	chr9	129613501	129614100	+	0	NA	intron (NM_199350, intron 4 of 6)	intron (NM_199350, intron 4 of 6)	4916	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
65627	chr14	52290601	52290800	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	23002	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
115537	chr19	15461651	15462150	+	0	NA	intron (NM_022904, intron 2 of 17)	MIRb|SINE|MIR	2644	NM_022904	64926		NM_022904	ENSG00000105122	RASAL3	-	RAS protein activator like 3	protein-coding
141101	chr2	238426171	238427850	+	0	NA	promoter-TSS (NM_001330196)	promoter-TSS (NM_001330196)	83	NM_001330196	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
25874	chr10	11255021	11255280	+	0	NA	intron (NM_001326330, intron 4 of 12)	intron (NM_001326330, intron 4 of 12)	89524	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
42305	chr11	68458971	68459130	+	0	NA	Intergenic	AluY|SINE|Alu	-1702	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
140519	chr2	233216971	233217330	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-34421	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
68954	chr14	91406401	91407680	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	10780	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
2700	chr1	10640201	10641030	+	0	NA	intron (NM_001079843, intron 20 of 20)	intron (NM_001079843, intron 20 of 20)	156031	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
83261	chr16	23951971	23952880	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	116442	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
107691	chr18	49484021	49484850	+	0	NA	intron (NM_001199355, intron 5 of 6)	AluSg|SINE|Alu	2799	NM_001199346	497661		NM_001035005	ENSG00000177576	C18orf32	GPIBD25	chromosome 18 open reading frame 32	protein-coding
200142	chr6	130268371	130268530	+	0	NA	intron (NM_001258275, intron 2 of 13)	Tigger3|DNA|TcMar-Tigger	-45499	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
89115	chr16	88497251	88497680	+	0	NA	intron (NM_153813, intron 3 of 9)	G-rich|Low_complexity|Low_complexity	28547	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
236563	chrX	72294601	72294800	+	0	NA	Intergenic	L1MD2|LINE|L1	11214	NM_001144887	4435		NM_004143	ENSG00000125931	CITED1	MSG1	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1	protein-coding
41333	chr11	65916921	65917330	+	0	NA	3' UTR (NM_031450, exon 2 of 2)	3' UTR (NM_031450, exon 2 of 2)	1937	NM_031450	83638		NM_031450	ENSG00000175573	C11orf68	BLES03|P5326	chromosome 11 open reading frame 68	protein-coding
59896	chr13	30739251	30739350	+	0	NA	intron (NM_001629, intron 1 of 4)	intron (NM_001629, intron 1 of 4)	3757	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
179055	chr4	165331021	165331280	+	0	NA	intron (NM_001017369, intron 1 of 4)	AluJb|SINE|Alu	3481	NM_006745	6307		NM_006745	ENSG00000052802	MSMO1	DESP4|ERG25|MCCPD|SC4MOL	methylsterol monooxygenase 1	protein-coding
100992	chr17	64634221	64634830	+	0	NA	intron (NM_022739, intron 1 of 18)	HAL1|LINE|L1	27782	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
126512	chr2	28418771	28418930	+	0	NA	Intergenic	AluSz|SINE|Alu	-24178	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
155431	chr22	38455201	38455530	+	0	NA	promoter-TSS (NM_152868)	promoter-TSS (NM_152868)	-166	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
43564	chr11	83011971	83012330	+	0	NA	intron (NM_001286060, intron 1 of 4)	MamRep137|DNA|TcMar-Tigger	22124	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
123768	chr19	55095871	55096230	+	0	NA	intron (NM_017607, intron 8 of 21)	intron (NM_017607, intron 8 of 21)	15658	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
47766	chr12	6547851	6548150	+	0	NA	intron (NM_001039670, intron 8 of 9)	intron (NM_001039670, intron 8 of 9)	8042	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
15045	chr1	148388171	148389330	+	0	NA	TTS (NR_106967)	TTS (NR_106967)	468	NR_106967	102466225		NR_106967	ENSG00000278596	MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
97625	chr17	44177401	44177600	+	0	NA	non-coding (NR_049729, exon 4 of 4)	non-coding (NR_049729, exon 4 of 4)	6796	NM_080863	92591		NM_080863	ENSG00000161664	ASB16	-	ankyrin repeat and SOCS box containing 16	protein-coding
208372	chr7	66638351	66638450	+	0	NA	exon (NM_001167961, exon 3 of 5)	exon (NM_001167961, exon 3 of 5)	9519	NM_153033	154881		NM_153033	ENSG00000243335	KCTD7	CLN14|EPM3	potassium channel tetramerization domain containing 7	protein-coding
222371	chr8	133583271	133583430	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-11463	NM_173344	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
157263	chr22	43904471	43904730	+	0	NA	Intergenic	LTR13|LTR|ERVK	-12587	NM_001371410	150379		NM_138814	ENSG00000100341	PNPLA5	GS2L|dJ388M5|dJ388M5.4	patatin like phospholipase domain containing 5	protein-coding
80150	chr16	2090951	2091950	+	0	NA	promoter-TSS (NR_135175)	promoter-TSS (NR_135175)	14	NR_135175	105371049		NR_135175	ENSG00000259933	PKD1-AS1	-	PKD1 antisense RNA 1	ncRNA
7565	chr1	35158601	35159200	+	0	NA	Intergenic	AluSx1|SINE|Alu	34245	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
173808	chr4	17810151	17811680	+	0	NA	promoter-TSS (NM_022346)	promoter-TSS (NM_022346)	-64	NR_073124	64151		NM_022346	ENSG00000109805	NCAPG	CAPG|CHCG|NY-MEL-3|YCG1	non-SMC condensin I complex subunit G	protein-coding
17390	chr1	156615951	156616250	+	0	NA	intron (NR_135113, intron 1 of 1)	intron (NR_135113, intron 1 of 1)	-3315	NM_021817	60484		NM_021817	ENSG00000132702	HAPLN2	BRAL1	hyaluronan and proteoglycan link protein 2	protein-coding
128647	chr2	61426251	61427050	+	0	NA	intron (NM_014709, intron 1 of 79)	L1M1|LINE|L1	-9273	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
187033	chr5	139795501	139796930	+	0	NA	intron (NM_032289, intron 1 of 14)	CpG	407	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
5139	chr1	24897951	24898580	+	0	NA	Intergenic	Intergenic	21151	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
178123	chr4	141686371	141686630	+	0	NA	intron (NR_037840, intron 2 of 7)	MIR|SINE|MIR	49917	NR_037840	3600		NM_000585	ENSG00000164136	IL15	IL-15	interleukin 15	protein-coding
83592	chr16	28168851	28169780	+	0	NA	intron (NM_001270940, intron 6 of 24)	intron (NM_001270940, intron 6 of 24)	42650	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
3040	chr1	12147301	12147500	+	0	NA	Intergenic	Intergenic	-19543	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
94355	chr17	28906151	28907680	+	0	NA	exon (NM_001033561, exon 14 of 15)	exon (NM_001033561, exon 14 of 15)	-3836	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
90681	chr17	1721851	1721950	+	0	NA	intron (NM_001163673, intron 1 of 9)	AluSp|SINE|Alu	-2804	NM_001163811	124997		NM_152348	ENSG00000167716	WDR81	CAMRQ2|CHMRQ|HYC3|PPP1R166|SORF-2	WD repeat domain 81	protein-coding
239517	chrY	56834151	56834980	+	0	NA	Intergenic	Intergenic	-119690	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
109519	chr19	847771	848200	+	0	NA	3' UTR (NM_002777, exon 5 of 5)	3' UTR (NM_002777, exon 5 of 5)	-4318	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
193399	chr6	30415421	30416280	+	0	NA	Intergenic	Intergenic	70694	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
64785	chr14	34832451	34833200	+	0	NA	intron (NM_013448, intron 3 of 26)	L1MB4|LINE|L1	-41366	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
119003	chr19	38894071	38894430	+	0	NA	promoter-TSS (NR_034146)	promoter-TSS (NR_034146)	-95	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
206701	chr7	36512851	36513150	+	0	NA	TTS (NM_001177507)	TTS (NM_001177507)	87120	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
17365	chr1	156524171	156525300	+	0	NA	TTS (NM_178229)	TTS (NM_178229)	-23960	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
38294	chr11	43419371	43419600	+	0	NA	intron (NM_018259, intron 16 of 23)	intron (NM_018259, intron 16 of 23)	60565	NR_164824	55761		NM_018259	ENSG00000052841	TTC17	-	tetratricopeptide repeat domain 17	protein-coding
230294	chr9	127945471	127945950	+	0	NA	exon (NM_001035254, exon 7 of 11)	exon (NM_001035254, exon 7 of 11)	5004	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
145430	chr20	43465301	43465800	+	0	NA	Intergenic	AluSp|SINE|Alu	7654	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
55950	chr12	110003251	110003780	+	0	NA	intron (NM_033121, intron 1 of 14)	intron (NM_033121, intron 1 of 14)	4085	NM_033121	88455		NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
41654	chr11	66547951	66548330	+	0	NA	intron (NR_047663, intron 1 of 20)	intron (NR_047663, intron 1 of 20)	1237	NM_001104	89		NM_001104	ENSG00000248746	ACTN3	ACTN3D	actinin alpha 3	protein-coding
123796	chr19	55154951	55155530	+	0	NA	intron (NM_000363, intron 5 of 7)	MSR1|Satellite|Satellite	2492	NM_000363	7137		NM_000363	ENSG00000129991	TNNI3	CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI	troponin I3, cardiac type	protein-coding
187339	chr5	141670171	141670330	+	0	NA	intron (NM_022481, intron 14 of 32)	MIR|SINE|MIR	11980	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
22280	chr1	212749901	212750700	+	0	NA	intron (NM_015471, intron 4 of 5)	intron (NM_015471, intron 4 of 5)	41477	NM_001297739	25936		NM_015471	ENSG00000117697	NSL1	C1orf48|DC8|MIS14	NSL1 component of MIS12 kinetochore complex	protein-coding
222908	chr8	142838351	142839250	+	0	NA	intron (NM_002066, intron 1 of 3)	intron (NM_002066, intron 1 of 3)	3999	NM_002066	2765		NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
95011	chr17	32384651	32385130	+	0	NA	Intergenic	AluSc8|SINE|Alu	34733	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
26325	chr10	15130521	15130850	+	0	NA	intron (NM_004808, intron 6 of 11)	AluJb|SINE|Alu	24662	NR_036506	100192204		NR_036506	ENSG00000206448	PPIAP30	-	peptidylprolyl isomerase A pseudogene 30	pseudo
91019	chr17	2800871	2801030	+	0	NA	intron (NM_001100398, intron 2 of 23)	AluSc|SINE|Alu	4512	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
79699	chr16	1293851	1294150	+	0	NA	Intergenic	MER41A|LTR|ERV1	-15152	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
85139	chr16	37835351	37835530	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2088888	NR_033985	400533		NR_033985	ENSG00000261122	LINC02167	-	long intergenic non-protein coding RNA 2167	ncRNA
58970	chr13	19857751	19858050	+	0	NA	intron (NM_001039649, intron 2 of 4)	AluJr|SINE|Alu	5736	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
81131	chr16	4391601	4393630	+	0	NA	intron (NM_001351729, intron 7 of 27)	intron (NM_001351729, intron 7 of 27)	20767	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
50288	chr12	46372401	46373300	+	0	NA	promoter-TSS (NM_018976)	promoter-TSS (NM_018976)	-77	NM_018976	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
26473	chr10	17650621	17651480	+	0	NA	intron (NM_001324286, intron 1 of 10)	AluY|SINE|Alu	6899	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
94406	chr17	28981821	28983300	+	0	NA	intron (NM_001290202, intron 1 of 16)	intron (NM_001290202, intron 1 of 16)	23473	NM_178860	124925		NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
162171	chr3	46987471	46988780	+	0	NA	intron (NM_001365116, intron 1 of 52)	intron (NM_001365116, intron 1 of 52)	135	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
137195	chr2	191148321	191149830	+	0	NA	intron (NM_001243835, intron 1 of 23)	intron (NM_001243835, intron 1 of 23)	1919	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
27276	chr10	30059051	30059900	+	0	NA	intron (NM_001350021, intron 1 of 4)	CpG	111	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
2319	chr1	9121721	9122730	+	0	NA	intron (NM_024980, intron 1 of 3)	intron (NM_024980, intron 1 of 3)	6877	NM_024980	80045		NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
205211	chr7	7851451	7851750	+	0	NA	intron (NM_001302350, intron 4 of 4)	L1MB8|LINE|L1	117152	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
215764	chr8	2073401	2073550	+	0	NA	exon (NM_003970, exon 10 of 37).2	exon (NM_003970, exon 10 of 37).2	-3114	NR_106983	102465695		NR_106983	ENSG00000273593	MIR7160	hsa-mir-7160	microRNA 7160	ncRNA
222658	chr8	141177471	141177630	+	0	NA	intron (NM_014957, intron 15 of 22)	intron (NM_014957, intron 15 of 22)	48961	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
221724	chr8	127430901	127431100	+	0	NA	intron (NR_117100, intron 4 of 5)	MER5A|DNA|hAT-Charlie	15175	NM_001159542	5462		NM_001159542	ENSG00000212993	POU5F1B	OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8	POU class 5 homeobox 1B	protein-coding
119309	chr19	39845701	39847580	+	0	NA	promoter-TSS (NM_001436)	promoter-TSS (NM_001436)	-261	NM_001436	2091		NM_001436	ENSG00000105202	FBL	FIB|FLRN|Nop1|RNU3IP1	fibrillarin	protein-coding
193093	chr6	28882101	28882300	+	0	NA	Intergenic	Intergenic	-14330	NR_104117	414760		NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14	ncRNA
27083	chr10	27256901	27257860	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1382	NR_138082	101060171		NR_138082		ODAD2P1	ARMC4P1	outer dynein arm docking complex subunit 2 pseudogene 1	pseudo
51773	chr12	53329121	53330030	+	0	NA	intron (NM_001300837, intron 2 of 2)	intron (NM_001300837, intron 2 of 2)	6201	NM_152860	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
7867	chr1	36384401	36386880	+	0	NA	intron (NM_032017, intron 1 of 11)	CpG	284	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
112772	chr19	7468871	7469430	+	0	NA	intron (NM_001367823, intron 27 of 28)	intron (NM_001367823, intron 27 of 28)	19885	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
171997	chr4	953901	954100	+	0	NA	intron (NM_032326, intron 8 of 10)	AluSg|SINE|Alu	19569	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
189975	chr5	177445401	177446000	+	0	NA	promoter-TSS (NM_001375593)	promoter-TSS (NM_001375593)	-295	NM_001375593	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
81838	chr16	11580971	11581130	+	0	NA	intron (NR_024320, intron 1 of 3)	AluJb|SINE|Alu	5323	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
59351	chr13	24614621	24614880	+	0	NA	Intergenic	Intergenic	34542	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
50939	chr12	49366001	49368330	+	0	NA	promoter-TSS (NM_023071)	promoter-TSS (NM_023071)	-297	NM_023071	65244		NM_023071	ENSG00000123352	SPATS2	Nbla00526|P59SCR|SCR59|SPATA10	spermatogenesis associated serine rich 2	protein-coding
108973	chr18	79619271	79619430	+	0	NA	Intergenic	Intergenic	40068	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
229632	chr9	124126821	124127230	+	0	NA	Intergenic	Intergenic	115257	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
65974	chr14	56491251	56491880	+	0	NA	Intergenic	Intergenic	-22766	NR_135241	101927690		NR_135241	ENSG00000258803	LOC101927690	-	uncharacterized LOC101927690	ncRNA
225446	chr9	35105821	35106080	+	0	NA	exon (NM_025182, exon 7 of 9)	exon (NM_025182, exon 7 of 9)	-2755	NM_001287031	30968		NM_013442	ENSG00000165283	STOML2	HSPC108|SLP-2	stomatin like 2	protein-coding
153159	chr22	23783451	23783830	+	0	NA	non-coding (NR_133013, exon 8 of 8).2	non-coding (NR_133013, exon 8 of 8).2	-3326	NM_003073	6598		NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI-1|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding
28854	chr10	62631221	62631480	+	0	NA	Intergenic	L3|LINE|CR1	-173370	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
200393	chr6	134317171	134317980	+	0	NA	5' UTR (NM_001143676, exon 1 of 14)	5' UTR (NM_001143676, exon 1 of 14)	483	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
86545	chr16	67183171	67184660	+	0	NA	promoter-TSS (NM_001369682)	promoter-TSS (NM_001369682)	48	NM_001369680	653319		NM_001040715	ENSG00000196123	MATCAP1	KIAA0895L|TMCP1	microtubule associated tyrosine carboxypeptidase 1	protein-coding
36637	chr11	7577651	7578150	+	0	NA	promoter-TSS (NM_001351860)	promoter-TSS (NM_001351860)	9	NM_001351860	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
231974	chr9	133184721	133185250	+	0	NA	Intergenic	L1MB5|LINE|L1	-21071	NM_021996	26301		NM_021996	ENSG00000148288	GBGT1	A3GALNT|FS|UNQ2513	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)	protein-coding
63343	chr13	114025321	114025680	+	0	NA	intron (NM_001320822, intron 7 of 23).2	L2c|LINE|L2	-51424	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
37902	chr11	34067371	34067730	+	0	NA	intron (NM_203364, intron 2 of 17)	AluJr4|SINE|Alu	15819	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
202095	chr6	154606351	154606850	+	0	NA	Intergenic	Intergenic	-95915	NM_173515	154043		NM_173515	ENSG00000153721	CNKSR3	CNK3|CNK3/IPCEF1|MAGI1	CNKSR family member 3	protein-coding
97272	chr17	43021701	43023130	+	0	NA	promoter-TSS (NM_006373)	promoter-TSS (NM_006373)	-30	NM_006373	10493		NM_006373	ENSG00000108828	VAT1	VATI	vesicle amine transport 1	protein-coding
42456	chr11	69443151	69443650	+	0	NA	Intergenic	CpG	17745	NM_001319657	102724265		NM_001319657	ENSG00000255980	LINC02953	-	long intergenic non-protein coding RNA 2953	ncRNA
37371	chr11	16740421	16740680	+	0	NA	intron (NM_014267, intron 1 of 4)	AluJb|SINE|Alu	1903	NM_014267	10944		NM_014267	ENSG00000110696	C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding
24402	chr1	243122971	243123530	+	0	NA	Intergenic	Intergenic	-21506	NR_029401	731275		NR_029401	ENSG00000291217	LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
31810	chr10	98541621	98541880	+	0	NA	intron (NM_001166244, intron 8 of 10)	L1PA3|LINE|L1	-94787	NM_001322477	3257		NM_000195	ENSG00000107521	HPS1	BLOC3S1|HPS	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding
30483	chr10	79248421	79248980	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-98769	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
182686	chr5	67780401	67780600	+	0	NA	Intergenic	L1PA3|LINE|L1	-12713	NR_130779	101928858		NR_130779	ENSG00000249364	LINC02997	-	long intergenic non-protein coding RNA 2997	ncRNA
191346	chr6	7135301	7136050	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	27714	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
206639	chr7	36148471	36148830	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-4604	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
148137	chr20	63482951	63483300	+	0	NA	Intergenic	Intergenic	-10470	NM_172108	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
136637	chr2	179247551	179247930	+	0	NA	intron (NM_178123, intron 1 of 17)	intron (NM_178123, intron 1 of 17)	17092	NM_178123	91404		NM_178123	ENSG00000187231	SESTD1	SOLO	SEC14 and spectrin domain containing 1	protein-coding
46050	chr11	122703871	122704230	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	48328	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
142515	chr20	4823221	4824650	+	0	NA	promoter-TSS (NM_014737)	promoter-TSS (NM_014737)	-327	NM_014737	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
237945	chrX	132613021	132613300	+	0	NA	Intergenic	Intergenic	-54482	NR_046691	100874102		NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
220526	chr8	100684851	100685400	+	0	NA	Intergenic	AluSg|SINE|Alu	17899	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
134893	chr2	149038521	149039130	+	0	NA	intron (NM_001317006, intron 1 of 4)	CpG	126	NM_177964	130576		NM_177964	ENSG00000150556	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding
98163	chr17	46056571	46057030	+	0	NA	intron (NM_015443, intron 6 of 14).2	MIRb|SINE|MIR	57550	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
221623	chr8	125701851	125701950	+	0	NA	Intergenic	Intergenic	249297	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
54039	chr12	75754271	75754430	+	0	NA	Intergenic	Intergenic	-242741	NM_007043	11103		NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1 small subunit processome component homolog	protein-coding
215663	chr8	659171	659800	+	0	NA	intron (NM_001303100, intron 5 of 5)	intron (NM_001303100, intron 5 of 5)	71739	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
101272	chr17	66352471	66352630	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	49937	NM_002737	5578		NM_002737	ENSG00000154229	PRKCA	AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA	protein kinase C alpha	protein-coding
166479	chr3	114285471	114286280	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-8153	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
181016	chr5	35856341	35857200	+	0	NA	promoter-TSS (NR_120485)	promoter-TSS (NR_120485)	-121	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
144505	chr20	35689501	35690300	+	0	NA	intron (NM_001198989, intron 4 of 11)	AluSq|SINE|Alu	9452	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
71128	chr14	104968971	104969730	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	1157	NM_001350929	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
163417	chr3	50554201	50554800	+	0	NA	Intergenic	Intergenic	13247	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
116733	chr19	18464471	18464830	+	0	NA	intron (NM_006532, intron 4 of 11)	intron (NM_006532, intron 4 of 11)	-26517	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
142386	chr20	3812851	3812950	+	0	NA	TTS (NR_109859)	TTS (NR_109859)	4406	NR_109859	101929125		NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
209031	chr7	74480521	74480780	+	0	NA	intron (NM_001199207, intron 1 of 26)	CpG	26744	NM_005685	9569		NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding
119530	chr19	40573651	40573750	+	0	NA	intron (NM_020971, intron 35 of 35)	AluSp|SINE|Alu	-3173	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
209304	chr7	76008001	76008470	+	0	NA	intron (NM_001317787, intron 3 of 6)	intron (NM_001317787, intron 3 of 6)	-13640	NM_031925	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
100437	chr17	61048721	61049000	+	0	NA	intron (NM_001353144, intron 21 of 25)	L1MEc|LINE|L1	318844	NR_136397	101927855		NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
230439	chr9	128158151	128158450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1965	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
88429	chr16	84751171	84751550	+	0	NA	intron (NR_073578, intron 3 of 10)	intron (NR_073578, intron 3 of 10)	51360	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
58069	chr12	124544471	124544980	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	22887	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
18474	chr1	161617021	161617280	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	11091	NR_024151	3311		NR_024151	ENSG00000225217	HSPA7	HSP70B	heat shock protein family A (Hsp70) member 7 (pseudogene)	pseudo
197020	chr6	53330921	53331180	+	0	NA	intron (NM_001242830, intron 1 of 6)	Tigger3b|DNA|TcMar-Tigger	6567	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
94133	chr17	28278101	28279050	+	0	NA	intron (NR_028334, intron 2 of 2)	L1M5|LINE|L1	28807	NR_028334	284085		NM_173624	ENSG00000293325	KRT18P55	-	keratin 18 pseudogene 55	pseudo
105769	chr18	2791251	2791750	+	0	NA	intron (NM_015295, intron 45 of 47)	AluJr|SINE|Alu	-55506	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
201498	chr6	149031921	149032300	+	0	NA	intron (NR_134599, intron 1 of 1)	intron (NR_134599, intron 1 of 1)	551	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
32025	chr10	101015271	101015430	+	0	NA	intron (NM_001195263, intron 11 of 16)	L2b|LINE|L2	12853	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
208695	chr7	73262471	73262830	+	0	NA	Intergenic	Intergenic	42011	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
235767	chrX	49042981	49044350	+	0	NA	promoter-TSS (NM_006521)	promoter-TSS (NM_006521)	-308	NM_001282142	7030		NM_006521	ENSG00000068323	TFE3	MRXSPF|RCCP2|RCCX1|TFEA|bHLHe33	transcription factor binding to IGHM enhancer 3	protein-coding
187500	chr5	142327321	142327580	+	0	NA	intron (NR_120664, intron 1 of 3)	intron (NR_120664, intron 1 of 3)	2157	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
149896	chr21	36113601	36114700	+	0	NA	intron (NR_040084, intron 1 of 3)	MER50|LTR|ERV1	9269	NR_147887	105369306		NR_147887	ENSG00000233393	LOC105369306	-	uncharacterized LOC105369306	ncRNA
196356	chr6	43226121	43226830	+	0	NA	intron (NM_006443, intron 1 of 3)	intron (NM_006443, intron 1 of 3)	3006	NM_199184	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
71821	chr15	22159371	22159530	+	0	NA	TTS (NR_135694).2	TTS (NR_135694).2	1480	NR_135695	102724760		NR_135695		LOC102724760	-	immunoglobulin heavy variable 1/OR15-1 pseudogene	pseudo
210122	chr7	98167851	98167950	+	0	NA	intron (NM_014916, intron 6 of 13)	L2a|LINE|L2	-43539	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
75829	chr15	69454921	69455180	+	0	NA	intron (NM_001003, intron 2 of 3)	intron (NM_001003, intron 2 of 3)	2232	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
188086	chr5	150208971	150209880	+	0	NA	exon (NM_014228, exon 14 of 14)	exon (NM_014228, exon 14 of 14)	19363	NM_014228	6534		NM_014228	ENSG00000011083	SLC6A7	PROT	solute carrier family 6 member 7	protein-coding
66661	chr14	63895301	63895700	+	0	NA	intron (NM_015180, intron 1 of 114)	AluJb|SINE|Alu	42496	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
198545	chr6	106556001	106556600	+	0	NA	intron (NM_001371242, intron 17 of 21)	L1M5|LINE|L1	44445	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
45704	chr11	119080651	119080750	+	0	NA	intron (NR_165447, intron 14 of 15).2	L2a|LINE|L2	-4177	NM_001258209	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
8372	chr1	40344301	40345100	+	0	NA	Intergenic	Intergenic	-27414	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
235510	chrX	47188601	47188800	+	0	NA	Intergenic	L1ME2|LINE|L1	-2147	NM_153280	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
78980	chr15	101647371	101647530	+	0	NA	intron (NM_001307960, intron 2 of 4)	intron (NM_001307960, intron 2 of 4)	4931	NM_078474	80213		NM_025141	ENSG00000184277	TM2D3	BLP2	TM2 domain containing 3	protein-coding
70278	chr14	101734471	101734630	+	0	NA	Intergenic	Intergenic	4113	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
41155	chr11	65599871	65600030	+	0	NA	intron (NM_002419, intron 8 of 9)	intron (NM_002419, intron 8 of 9)	-4150	NM_033348	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
24505	chr1	244451301	244452650	+	0	NA	promoter-TSS (NM_001126)	promoter-TSS (NM_001126)	-66	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
156168	chr22	40214421	40214750	+	0	NA	intron (NM_015088, intron 1 of 20)	AluJr4|SINE|Alu	36660	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
193480	chr6	30540971	30542100	+	0	NA	3' UTR (NM_005275, exon 12 of 12)	3' UTR (NM_005275, exon 12 of 12)	-15174	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
16853	chr1	155712671	155712830	+	0	NA	intron (NM_001199851, intron 2 of 11)	FLAM_A|SINE|Alu	23656	NM_033657	7818		NM_004632	ENSG00000132676	DAP3	DAP-3|MRP-S29|MRPS29|S29mt|bMRP-10|mS29	death associated protein 3	protein-coding
131795	chr2	98511671	98512230	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	65940	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
38743	chr11	46936271	46937450	+	0	NA	promoter-TSS (NM_024113)	promoter-TSS (NM_024113)	99	NR_103472	79096		NM_024113	ENSG00000149179	CSTPP1	C11orf49	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	protein-coding
67638	chr14	73060951	73061250	+	0	NA	intron (NM_021239, intron 1 of 18)	AluSx1|SINE|Alu	2566	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
86442	chr16	66920271	66920430	+	0	NA	Intergenic	Intergenic	-1465	NM_001204746	1014		NM_004062	ENSG00000166589	CDH16	-	cadherin 16	protein-coding
2941	chr1	11858601	11859650	+	0	NA	promoter-TSS (NM_002521)	promoter-TSS (NM_002521)	-180	NM_002521	4879		NM_002521	ENSG00000120937	NPPB	BNP|Iso-ANP	natriuretic peptide B	protein-coding
122229	chr19	48989301	48989900	+	0	NA	intron (NR_027763, intron 1 of 14)	AluJb|SINE|Alu	3709	NR_027763	2997		NM_002103	ENSG00000104812	GYS1	GSY|GYS	glycogen synthase 1	protein-coding
150387	chr21	42292151	42293350	+	0	NA	intron (NM_207628, intron 15 of 16)	(CACACTA)n|Simple_repeat|Simple_repeat	22659	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
149437	chr21	31410551	31410950	+	0	NA	intron (NM_001353690, intron 1 of 27)	GA-rich|Low_complexity|Low_complexity	-66396	NM_001353687	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
116634	chr19	18304301	18306020	+	0	NA	Intergenic	Intergenic	17916	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
29997	chr10	73761151	73761650	+	0	NA	intron (NM_198597, intron 6 of 22)	intron (NM_198597, intron 6 of 22)	-10876	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
234396	chrX	16710071	16710430	+	0	NA	intron (NM_019857, intron 1 of 18)	MER39|LTR|ERV1	1967	NM_001144002	56474		NM_019857	ENSG00000047230	CTPS2	GATD5B	CTP synthase 2	protein-coding
124070	chr19	55607801	55608000	+	0	NA	intron (NM_001195605, intron 1 of 1)	L2a|LINE|L2	2253	NM_001195605	100507290		NM_001195605	ENSG00000261221	ZNF865	-	zinc finger protein 865	protein-coding
31940	chr10	100651421	100651880	+	0	NA	Intergenic	Intergenic	-83746	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
100896	chr17	64395821	64397280	+	0	NA	Intergenic	AluSx|SINE|Alu	-5690	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
154889	chr22	37155851	37156150	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	-6084	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
224918	chr9	32571921	32572600	+	0	NA	intron (NM_182739, intron 1 of 2)	intron (NM_182739, intron 1 of 2)	899	NM_002493	4712		NM_002493	ENSG00000165264	NDUFB6	B17|CI	NADH:ubiquinone oxidoreductase subunit B6	protein-coding
51113	chr12	50074051	50074350	+	0	NA	exon (NM_001256830, exon 1 of 10)	exon (NM_001256830, exon 1 of 10)	615	NM_001256830	41		NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding
228058	chr9	96048001	96048650	+	0	NA	Intergenic	Intergenic	-17514	NR_033838	158435		NM_138497		LOC158435	-	uncharacterized LOC158435	ncRNA
22481	chr1	221719751	221720250	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	16900	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
147639	chr20	62166701	62167100	+	0	NA	intron (NM_001301778, intron 9 of 11)	AluSq2|SINE|Alu	-16128	NR_169205	26164		NM_015666	ENSG00000101181	MTG2	GTPBP5|ObgH1|dJ1005F21.2	mitochondrial ribosome associated GTPase 2	protein-coding
71783	chr15	21656221	21657270	+	0	NA	Intergenic	L1P4b|LINE|L1	18166	NM_001365389	105369274		NM_001365389	ENSG00000279408	OR4N4C	-	olfactory receptor family 4 subfamily N member 4C	protein-coding
163591	chr3	51972251	51972550	+	0	NA	intron (NM_032750, intron 1 of 3)	AluSp|SINE|Alu	2230	NM_032750	84836		NM_032750	ENSG00000114779	ABHD14B	CIB|HEL-S-299	abhydrolase domain containing 14B	protein-coding
5868	chr1	26743651	26745150	+	0	NA	intron (NM_139135, intron 4 of 19)	intron (NM_139135, intron 4 of 19)	-42654	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
211977	chr7	112937651	112938400	+	0	NA	intron (NM_152556, intron 1 of 4)	intron (NM_152556, intron 1 of 4)	1850	NM_152556	154743		NM_152556	ENSG00000164603	BMT2	C7orf60|SAMTOR	base methyltransferase of 25S rRNA 2 homolog	protein-coding
218338	chr8	42887521	42887980	+	0	NA	exon (NM_001160223, exon 2 of 7)	exon (NM_001160223, exon 2 of 7)	8525	NR_039679	100616115		NR_039679	ENSG00000284062	MIR4469	mir-4469	microRNA 4469	ncRNA
126931	chr2	33275551	33276250	+	0	NA	exon (NM_001166264, exon 14 of 29)	exon (NM_001166264, exon 14 of 29)	141304	NM_001166264	4052		NM_000627	ENSG00000049323	LTBP1	ARCL2E	latent transforming growth factor beta binding protein 1	protein-coding
130108	chr2	74527601	74528000	+	0	NA	exon (NM_181575, exon 8 of 12)	exon (NM_181575, exon 8 of 12)	-1569	NM_133637	165545		NM_133637	ENSG00000144045	DQX1	-	DEAQ-box RNA dependent ATPase 1	protein-coding
87098	chr16	68526351	68526880	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-12598	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
227124	chr9	86106801	86107480	+	0	NA	Intergenic	L1MA4|LINE|L1	-6939	NM_177937	51280		NM_016548	ENSG00000135052	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
116116	chr19	17315771	17316330	+	0	NA	intron (NM_024050, intron 4 of 4)	L2c|LINE|L2	6487	NM_024050	79016		NM_024050	ENSG00000130311	DDA1	C19orf58|PCIA1	DET1 and DDB1 associated 1	protein-coding
156196	chr22	40278751	40279530	+	0	NA	intron (NM_015088, intron 8 of 20)	intron (NM_015088, intron 8 of 20)	-67360	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
102738	chr17	76244051	76244400	+	0	NA	Intergenic	Intergenic	-3732	NM_052916	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
216610	chr8	22059571	22060730	+	0	NA	intron (NM_001323394, intron 1 of 14)	intron (NM_001323394, intron 1 of 14)	1070	NM_001302816	2039		NM_001978	ENSG00000158856	DMTN	DMT|EPB49	dematin actin binding protein	protein-coding
97124	chr17	42531861	42533330	+	0	NA	Intergenic	AluY|SINE|Alu	-3646	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
161820	chr3	45592471	45592630	+	0	NA	Intergenic	Charlie3|DNA|hAT-Charlie	-2201	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
120225	chr19	42312401	42312600	+	0	NA	promoter-TSS (NM_001366910)	promoter-TSS (NM_001366910)	-809	NM_001366910	284339		NM_173633	ENSG00000167619	TMEM145	-	transmembrane protein 145	protein-coding
122047	chr19	48647921	48648430	+	0	NA	intron (NR_004401, intron 1 of 4)	AluSx|SINE|Alu	-1988	NR_136241	770		NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
23313	chr1	228086271	228086930	+	0	NA	intron (NM_001024227, intron 1 of 4)	MER21B|LTR|ERVL	3450	NM_001024227	375		NM_001658	ENSG00000143761	ARF1	PVNH8	ADP ribosylation factor 1	protein-coding
234368	chrX	15749721	15750280	+	0	NA	non-coding (NR_160545, exon 5 of 6)	non-coding (NR_160545, exon 5 of 6)	11730	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
40652	chr11	64736071	64736230	+	0	NA	intron (NM_001098670, intron 9 of 16)	intron (NM_001098670, intron 9 of 16)	7992	NM_001098671	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
135534	chr2	162315021	162315280	+	0	NA	intron (NM_022168, intron 1 of 15)	intron (NM_022168, intron 1 of 15)	3534	NM_022168	64135		NM_022168	ENSG00000115267	IFIH1	AGS7|Hlcd|IDDM19|IMD95|MDA-5|MDA5|RLR-2|SGMRT1	interferon induced with helicase C domain 1	protein-coding
3851	chr1	16927121	16928130	+	0	NA	intron (NM_014675, intron 3 of 36)	intron (NM_014675, intron 3 of 36)	5694	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
39349	chr11	59549021	59549280	+	0	NA	Intergenic	Intergenic	34237	NM_001004711	390199		NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
167324	chr3	128736901	128737100	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	10817	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
140752	chr2	234487651	234487950	+	0	NA	Intergenic	LTR88c|LTR|Gypsy?	9249	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
183112	chr5	74641901	74642500	+	0	NA	promoter-TSS (NM_001256574)	promoter-TSS (NM_001256574)	-776	NM_001256575	8507		NM_003633	ENSG00000171617	ENC1	CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10	ectodermal-neural cortex 1	protein-coding
100868	chr17	64306651	64307380	+	0	NA	Intergenic	Intergenic	-43755	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
110094	chr19	1527151	1527450	+	0	NA	intron (NM_001243079, intron 6 of 13)	intron (NM_001243079, intron 6 of 13)	3223	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
11798	chr1	92586151	92586780	+	0	NA	intron (NM_001377211, intron 17 of 18)	L1MC3|LINE|L1	-99540	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
150014	chr21	37166851	37166950	+	0	NA	intron (NM_001001894, intron 33 of 45)	LTR79|LTR|ERVL	27026	NR_046651	100874006		NR_046651	ENSG00000228677	TTC3-AS1	-	TTC3 antisense RNA 1	ncRNA
239203	chrY	12917351	12917950	+	0	NA	intron (NR_136716, intron 14 of 14)	AluSx3|SINE|Alu	11945	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
10096	chr1	58932901	58933380	+	0	NA	Intergenic	Intergenic	-87336	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
117888	chr19	32691201	32692870	+	0	NA	promoter-TSS (NM_001105570)	promoter-TSS (NM_001105570)	74	NM_001105570	390916		NM_001105570	ENSG00000213965	NUDT19	RP2	nudix hydrolase 19	protein-coding
227999	chr9	95508221	95508600	+	0	NA	promoter-TSS (NM_001083606)	promoter-TSS (NM_001083606)	-370	NM_001083605	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
144164	chr20	34068201	34068430	+	0	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	19196	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
238191	chrX	136921871	136922150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-41230	NR_028476	27316		NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|MRXSG|MRXSH|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein X-linked	protein-coding
69897	chr14	99437471	99437630	+	0	NA	intron (NM_032233, intron 6 of 12)	intron (NM_032233, intron 6 of 12)	43309	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
138941	chr2	218247701	218248100	+	0	NA	intron (NM_152862, intron 8 of 10)	AluY|SINE|Alu	-11596	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
111238	chr19	3516521	3517730	+	0	NA	intron (NM_016263, intron 1 of 13)	AluJb|SINE|Alu	-5831	NM_001136197	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
60309	chr13	40648971	40649330	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	17491	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
210297	chr7	99447901	99448100	+	0	NA	intron (NM_006693, intron 2 of 7)	intron (NM_006693, intron 2 of 7)	8624	NM_001318162	10898		NM_006693	ENSG00000160917	CPSF4	CPSF30|NAR|NEB-1|NEB1	cleavage and polyadenylation specific factor 4	protein-coding
126759	chr2	30242351	30242450	+	0	NA	intron (NM_030915, intron 2 of 2)	AluSz6|SINE|Alu	10866	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
15232	chr1	149562071	149562600	+	0	NA	Intergenic	LOR1a|LTR|ERV1	-21488	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
157700	chr22	46370801	46371700	+	0	NA	intron (NM_001378328, intron 25 of 34)	intron (NM_001378328, intron 25 of 34)	35536	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
83108	chr16	22471751	22472050	+	0	NA	intron (NR_027154, intron 11 of 28)	intron (NR_027154, intron 11 of 28)	-32549	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
219514	chr8	74052121	74052380	+	0	NA	Intergenic	Intergenic	60858	NM_015364	23643		NM_015364	ENSG00000154589	LY96	ESOP-1|MD-2|MD2|ly-96	lymphocyte antigen 96	protein-coding
232435	chr9	136106021	136108050	+	0	NA	Intergenic	Intergenic	-10757	NR_165242	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
201466	chr6	148749301	148749500	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	2370	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
127149	chr2	37832651	37833050	+	0	NA	intron (NR_110012, intron 2 of 3)	intron (NR_110012, intron 2 of 3)	-3139	NR_110011	101929559		NR_110011	ENSG00000237803	PIRAT1	LINC00211|NCRNA00211|PIRAT	PU.1 (SPI1) induced regulator of S100A8 and S100A9 alarmin transcription 1	ncRNA
53020	chr12	57549601	57550730	+	0	NA	5' UTR (NM_001354705, exon 1 of 26)	5' UTR (NM_001354705, exon 1 of 26)	121	NM_004984	3798		NM_004984	ENSG00000155980	KIF5A	ALS25|D12S1889|MY050|NEIMY|NKHC|SPG10	kinesin family member 5A	protein-coding
179423	chr4	184281501	184281700	+	0	NA	Intergenic	Intergenic	-63727	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
83460	chr16	27353851	27354150	+	0	NA	intron (NM_001257997, intron 6 of 9)	MLT1J2|LTR|ERVL-MaLR	40026	NM_001257997	3566		NM_000418	ENSG00000077238	IL4R	CD124|IL-4RA|IL4RA	interleukin 4 receptor	protein-coding
109752	chr19	1114571	1115350	+	0	NA	intron (NM_001100122, intron 14 of 28).2	AluSx|SINE|Alu	10310	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
198827	chr6	109090451	109091050	+	0	NA	intron (NM_014454, intron 1 of 9)	Tigger2|DNA|TcMar-Tigger	4096	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
89775	chr16	89469251	89470180	+	0	NA	intron (NM_001256182, intron 1 of 13)	AluY|SINE|Alu	20846	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
55626	chr12	107029221	107029830	+	0	NA	intron (NM_004075, intron 1 of 12)	AluJb|SINE|Alu	-42359	NM_025198	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
14996	chr1	148126951	148127300	+	0	NA	intron (NM_183372, intron 4 of 23)	intron (NM_183372, intron 4 of 23)	25156	NM_001101663	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
58603	chr12	132478701	132479450	+	0	NA	Intergenic	Intergenic	-11076	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171432	chr3	196273001	196273200	+	0	NA	intron (NM_001312673, intron 1 of 8)	MER52A|LTR|ERV1	14626	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
7170	chr1	32253401	32254720	+	0	NA	intron (NM_005356, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	2795	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
149868	chr21	35438721	35438980	+	0	NA	intron (NR_073512, intron 2 of 2)	intron (NR_073512, intron 2 of 2)	141914	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
147701	chr20	62349371	62349900	+	0	NA	intron (NM_005560, intron 6 of 79)	L1MEd|LINE|L1	-3375	NR_109923	101928158		NR_109922	ENSG00000228812	LAMA5-AS1	-	LAMA5 antisense RNA 1	ncRNA
222244	chr8	133194171	133195100	+	0	NA	intron (NM_001204870, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	3596	NM_080838	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
89614	chr16	89304321	89305150	+	0	NA	intron (NR_045839, intron 5 of 9)	intron (NR_045839, intron 5 of 9)	8607	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
105835	chr18	2984101	2984400	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	27697	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
15454	chr1	150328271	150328630	+	0	NA	non-coding (NR_146766, exon 4 of 16)	non-coding (NR_146766, exon 4 of 16)	6917	NM_004698	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
83495	chr16	27421921	27422230	+	0	NA	intron (NM_181079, intron 2 of 9)	L1MB7|LINE|L1	-5196	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
127092	chr2	37601901	37602300	+	0	NA	Intergenic	Intergenic	69542	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
83801	chr16	28822201	28823400	+	0	NA	promoter-TSS (NM_007245)	promoter-TSS (NM_007245)	-248	NM_148414	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
139833	chr2	230423871	230424700	+	0	NA	intron (NM_001080391, intron 2 of 28)	LTR43B|LTR|ERV1	7529	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
49430	chr12	24718501	24718700	+	0	NA	Intergenic	Intergenic	-134432	NR_029451	144360		NM_144667	ENSG00000197503	LINC00477	C12orf67|FAM191B	long intergenic non-protein coding RNA 477	ncRNA
115585	chr19	15911721	15912050	+	0	NA	TTS (NM_001128932)	TTS (NM_001128932)	-13811	NM_001082	8529		NM_001082	ENSG00000186115	CYP4F2	CPF2	cytochrome P450 family 4 subfamily F member 2	protein-coding
94880	chr17	31530201	31530830	+	0	NA	intron (NM_001346748, intron 12 of 12)	intron (NM_001346748, intron 12 of 12)	-4368	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
55448	chr12	104580021	104580480	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-11383	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
92565	chr17	9002851	9003680	+	0	NA	Intergenic	CpG	-18245	NM_004822	9423		NM_004822	ENSG00000065320	NTN1	MRMV4|NET1|NTN1L	netrin 1	protein-coding
48204	chr12	8081461	8082950	+	0	NA	promoter-TSS (NM_015509)	promoter-TSS (NM_015509)	-6	NR_024260	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
84658	chr16	30743351	30743650	+	0	NA	intron (NM_001256829, intron 2 of 2)	intron (NM_001256829, intron 2 of 2)	2858	NM_001256829	100862671		NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
164643	chr3	66482001	66482400	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	17854	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
110406	chr19	1952871	1953850	+	0	NA	intron (NR_033400, intron 2 of 2)	intron (NR_033400, intron 2 of 2)	1189	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
188534	chr5	156101821	156102080	+	0	NA	Intergenic	(AG)n|Simple_repeat|Simple_repeat	-225214	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
40917	chr11	65211471	65211630	+	0	NA	non-coding (NR_040008, exon 21 of 21)	non-coding (NR_040008, exon 21 of 21)	-2290	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
152500	chr22	20929951	20930250	+	0	NA	intron (NR_156180, intron 1 of 3)	intron (NR_156180, intron 1 of 3)	12693	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
30989	chr10	88091151	88092130	+	0	NA	Intergenic	Intergenic	228015	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
4049	chr1	19001271	19001430	+	0	NA	Intergenic	L1MEc|LINE|L1	-44674	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
218461	chr8	48514021	48515130	+	0	NA	Intergenic	CpG	-36992	NR_105002	101929268		NR_105002	ENSG00000253608	LOC101929268	-	uncharacterized LOC101929268	ncRNA
218790	chr8	59012451	59012750	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	106547	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
3381	chr1	15724521	15724780	+	0	NA	intron (NM_015164, intron 7 of 19)	(TGCTCTG)n|Simple_repeat|Simple_repeat	-11608	NM_207348	284723		NM_207348	ENSG00000162461	SLC25A34	-	solute carrier family 25 member 34	protein-coding
142501	chr20	4759171	4759700	+	0	NA	Intergenic	L1PB1|LINE|L1	-18767	NR_024268	149830		NM_177549	ENSG00000180259	PRNT	M8	prion locus lncRNA, testis expressed	ncRNA
99484	chr17	50184851	50185150	+	0	NA	3' UTR (NM_000088, exon 51 of 51)	3' UTR (NM_000088, exon 51 of 51)	-12524	NR_024192	373861		NM_194072		H1-9P	H1-9|H1.9|HILS1	H1.9 linker histone, pseudogene	pseudo
3466	chr1	15947851	15948480	+	0	NA	intron (NM_001242884, intron 2 of 14)	intron (NM_001242884, intron 2 of 14)	27936	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
92590	chr17	9290071	9290230	+	0	NA	intron (NM_004853, intron 7 of 7)	HAL1|LINE|L1	-111032	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
44834	chr11	114070111	114070330	+	0	NA	intron (NM_001354751, intron 2 of 6)	AluYb8|SINE|Alu	7009	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
198321	chr6	100913751	100914080	+	0	NA	Intergenic	L1PA4|LINE|L1	-32543	NM_022091	10973		NM_006828	ENSG00000112249	ASCC3	ASC1p200|HELIC1|MRT81|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
224692	chr9	21334571	21335700	+	0	NA	5' UTR (NM_018847, exon 1 of 1)	5' UTR (NM_018847, exon 1 of 1)	269	NM_018847	55958		NM_018847	ENSG00000198642	KLHL9	-	kelch like family member 9	protein-coding
63012	chr13	112688201	112688880	+	0	NA	Intergenic	LTR33|LTR|ERVL	-1789	NM_032189	23250		NM_015205	ENSG00000068650	ATP11A	ATPIH|ATPIS|AUNA2|DFNA84|HLD24	ATPase phospholipid transporting 11A	protein-coding
131822	chr2	98633101	98633300	+	0	NA	intron (NM_001160154, intron 11 of 12)	L1M4b|LINE|L1	24611	NM_001330353	25972		NM_014044	ENSG00000115446	UNC50	GMH1|HSD23|PDLs22|UNCL|URP	unc-50 inner nuclear membrane RNA binding protein	protein-coding
87328	chr16	70286271	70286730	+	0	NA	intron (NM_001605, intron 1 of 20)	AluJb|SINE|Alu	3006	NM_001605	16		NM_001605	ENSG00000090861	AARS1	AARS|CMT2N|DEE29|EIEE29|HDLS2|TTD8	alanyl-tRNA synthetase 1	protein-coding
89255	chr16	88655051	88655230	+	0	NA	intron (NM_002461, intron 7 of 9)	CpG	-4087	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
60107	chr13	37056621	37057200	+	0	NA	intron (NM_001014286, intron 1 of 25)	MER5B|DNA|hAT-Charlie	2577	NM_001278482	55578		NM_017569	ENSG00000102710	SUPT20H	C13|C13orf19|FAM48A|FP757|P38IP|SPT20	SPT20 homolog, SAGA complex component	protein-coding
30238	chr10	75013601	75014000	+	0	NA	intron (NM_012330, intron 13 of 17).2	MIR|SINE|MIR	-7933	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
178558	chr4	151109851	151109950	+	0	NA	Intergenic	AluSz6|SINE|Alu	6073	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
50433	chr12	47633471	47633630	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	72480	NM_024604	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
164744	chr3	69037921	69038180	+	0	NA	intron (NM_001363879, intron 8 of 16)	L1M4|LINE|L1	10985	NR_036087	100422859		NR_036087	ENSG00000265355	MIR3136	mir-3136	microRNA 3136	ncRNA
185941	chr5	132954751	132955050	+	0	NA	intron (NM_014423, intron 1 of 20)	LTR1F2|LTR|ERV1	8734	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
212484	chr7	128537021	128538280	+	0	NA	Intergenic	Intergenic	60902	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
75595	chr15	67096821	67097380	+	0	NA	intron (NM_005902, intron 1 of 8)	MIR1_Amn|SINE|MIR	-28616	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
21165	chr1	203758901	203759100	+	0	NA	Intergenic	MER41A|LTR|ERV1	-6183	NM_001136190	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
215813	chr8	2733621	2734530	+	0	NA	intron (NR_168445, intron 1 of 10)	LTR60B|LTR|ERV1	-5624	NR_125425	101927815		NR_125423	ENSG00000254319	LINC03021	-	long intergenic non-protein coding RNA 3021	ncRNA
44017	chr11	94934501	94935250	+	0	NA	Intergenic	Intergenic	38681	NM_016403	51503		NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
32395	chr10	102429751	102430050	+	0	NA	intron (NM_024040, intron 1 of 8)	AluSq2|SINE|Alu	2674	NM_024040	79004		NM_024040	ENSG00000107874	CUEDC2	C10orf66|bA18I14.5	CUE domain containing 2	protein-coding
34089	chr10	125158771	125159780	+	0	NA	promoter-TSS (NM_001321013)	promoter-TSS (NM_001321013)	-498	NM_001321014	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
39147	chr11	53936871	53937030	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	667048	NM_001004703	119749		NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
205205	chr7	7782871	7783230	+	0	NA	intron (NM_001302350, intron 3 of 4)	intron (NM_001302350, intron 3 of 4)	-64443	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
107538	chr18	48542871	48543230	+	0	NA	intron (NM_001142397, intron 2 of 12)	intron (NM_001142397, intron 2 of 12)	4019	NM_001142397	9811		NM_014772	ENSG00000134030	CTIF	Gm672|KIAA0427	cap binding complex dependent translation initiation factor	protein-coding
80210	chr16	2160251	2160700	+	0	NA	intron (NM_032271, intron 1 of 20)	intron (NM_032271, intron 1 of 20)	4693	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
26979	chr10	26742251	26742350	+	0	NA	intron (NM_001321979, intron 10 of 11)	intron (NM_001321979, intron 10 of 11)	44599	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
56687	chr12	120018321	120018580	+	0	NA	intron (NR_147894, intron 3 of 8)	intron (NR_147894, intron 3 of 8)	28606	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
106181	chr18	10527751	10527850	+	0	NA	intron (NM_003826, intron 1 of 11)	intron (NM_003826, intron 1 of 11)	1773	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
129256	chr2	68377051	68377750	+	0	NA	intron (NM_002664, intron 1 of 8)	L1MA2|LINE|L1	12118	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
170844	chr3	190516051	190516350	+	0	NA	intron (NR_157353, intron 1 of 9)	intron (NR_157353, intron 1 of 9)	2115	NM_134470	3556		NM_002182	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
211808	chr7	107893401	107893700	+	0	NA	intron (NM_001289750, intron 2 of 11)	L2a|LINE|L2	2367	NM_000108	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
93304	chr17	18160001	18160200	+	0	NA	intron (NM_016239, intron 55 of 64)	intron (NM_016239, intron 55 of 64)	-23728	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
75560	chr15	67033651	67034150	+	0	NA	intron (NR_135686, intron 2 of 5)	(GCCCACC)n|Simple_repeat|Simple_repeat	30282	NR_135686	102723493		NR_135686		SMAD3-DT	-	SMAD3 divergent transcript	ncRNA
21190	chr1	203811621	203812580	+	0	NA	intron (NM_001376350, intron 2 of 17)	AluSz|SINE|Alu	14577	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
32360	chr10	102389151	102390130	+	0	NA	Intergenic	AluJo|SINE|Alu	-4470	NM_001322935	4791		NM_002502	ENSG00000077150	NFKB2	CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52	nuclear factor kappa B subunit 2	protein-coding
27548	chr10	32338101	32338700	+	0	NA	intron (NR_168508, intron 1 of 12)	L2a|LINE|L2	8758	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
88501	chr16	85258571	85258950	+	0	NA	Intergenic	Intergenic	-24198	NR_038859	197196		NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA
166446	chr3	113951051	113951350	+	0	NA	intron (NM_173570, intron 2 of 5)	MLT1A0-int|LTR|ERVL-MaLR	3187	NM_001320467	254887		NM_173570	ENSG00000184307	ZDHHC23	DHHC-23|NIDD	zinc finger DHHC-type palmitoyltransferase 23	protein-coding
35243	chr11	845951	846330	+	0	NA	intron (NM_001025237, intron 1 of 8)	intron (NM_001025237, intron 1 of 8)	1694	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
83286	chr16	24050351	24050450	+	0	NA	intron (NM_212535, intron 5 of 16)	L3b|LINE|CR1	-152716	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
66879	chr14	65094521	65094780	+	0	NA	TTS (NR_045122)	TTS (NR_045122)	4732	NR_045122	100506321		NR_045122	ENSG00000259118	LOC100506321	-	uncharacterized LOC100506321	ncRNA
150881	chr21	44130801	44131030	+	0	NA	3' UTR (NM_001368238, exon 21 of 21).2	3' UTR (NM_001368238, exon 21 of 21).2	-2768	NR_135220	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
213997	chr7	142866171	142866580	+	0	NA	intron (NM_004445, intron 9 of 19).2	intron (NM_004445, intron 9 of 19).2	3619	NM_001280795	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
20662	chr1	200226101	200226700	+	0	NA	Intergenic	Intergenic	147392	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
53390	chr12	64692201	64692800	+	0	NA	intron (NR_040718, intron 3 of 3)	intron (NR_040718, intron 3 of 3)	66906	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
161571	chr3	42830401	42830730	+	0	NA	intron (NM_001296, intron 2 of 2)	intron (NM_001296, intron 2 of 2)	21120	NM_001296	1238		NM_001296	ENSG00000144648	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
71056	chr14	104803971	104804200	+	0	NA	3' UTR (NM_001137601, exon 1 of 1)	3' UTR (NM_001137601, exon 1 of 1)	2984	NM_001137601	100128927		NM_001137601	ENSG00000179627	ZBTB42	LCCS6|ZNF925	zinc finger and BTB domain containing 42	protein-coding
87964	chr16	80500651	80500750	+	0	NA	intron (NR_120307, intron 2 of 5)	intron (NR_120307, intron 2 of 5)	-40034	NM_001305017	83657		NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein light chain roadblock-type 2	protein-coding
70758	chr14	103420271	103420430	+	0	NA	intron (NM_002376, intron 2 of 15)	AluJb|SINE|Alu	34935	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
127176	chr2	38370201	38370930	+	0	NA	intron (NM_001330462, intron 1 of 13)	AluSx1|SINE|Alu	5965	NM_001330460	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
135086	chr2	157302321	157302820	+	0	NA	intron (NM_014568, intron 7 of 9)	intron (NM_014568, intron 7 of 9)	23254	NM_001304346	57471		NM_020711	ENSG00000136541	ERMN	JN|KIAA1189	ermin	protein-coding
158633	chr3	4977901	4979800	+	0	NA	promoter-TSS (NM_003670)	promoter-TSS (NM_003670)	-587	NM_003670	8553		NM_003670	ENSG00000134107	BHLHE40	BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14	basic helix-loop-helix family member e40	protein-coding
36517	chr11	6443151	6443700	+	0	NA	Intergenic	Intergenic	-2438	NM_000613	3263		NM_000613	ENSG00000110169	HPX	HX	hemopexin	protein-coding
227670	chr9	92984671	92985230	+	0	NA	intron (NM_001369951, intron 3 of 17)	MER50-int|LTR|ERV1	10481	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
46589	chr11	128517921	128518650	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	4025	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
83073	chr16	22361321	22361800	+	0	NA	intron (NM_001802, intron 2 of 4)	intron (NM_001802, intron 2 of 4)	13059	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
206715	chr7	36529271	36529430	+	0	NA	intron (NM_001177506, intron 19 of 21)	intron (NM_001177506, intron 19 of 21)	70770	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
189318	chr5	172148571	172148730	+	0	NA	intron (NM_005990, intron 2 of 18)	intron (NM_005990, intron 2 of 18)	39574	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
47992	chr12	6912751	6912850	+	0	NA	exon (NM_201650, exon 7 of 8)	exon (NM_201650, exon 7 of 8)	-1780	NM_001975	2026		NM_001975	ENSG00000111674	ENO2	HEL-S-279|NSE	enolase 2	protein-coding
53365	chr12	64663401	64663750	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSx|SINE|Alu	-40970	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
140880	chr2	237597801	237598250	+	0	NA	Intergenic	L2|LINE|L2	-7291	NM_022449	64284		NM_022449	ENSG00000124839	RAB17	-	RAB17, member RAS oncogene family	protein-coding
133775	chr2	127674121	127676000	+	0	NA	5' UTR (NM_001161403, exon 1 of 10)	5' UTR (NM_001161403, exon 1 of 10)	470	NM_001161403	55679		NM_017980	ENSG00000072163	LIMS2	LGMD2W|MDRCMTT|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
72144	chr15	29042051	29042150	+	0	NA	intron (NM_001353793, intron 2 of 12).2	MLT1C|LTR|ERVL-MaLR	-28558	NM_001353797	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
47823	chr12	6591921	6592630	+	0	NA	intron (NM_001273, intron 19 of 39)	intron (NM_001273, intron 19 of 39)	-10666	NR_003012	677780		NR_003012	ENSG00000251898	SCARNA11	ACA57	small Cajal body-specific RNA 11	ncRNA
136685	chr2	181116721	181116980	+	0	NA	Intergenic	Intergenic	-6987	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
148185	chr20	63546301	63546850	+	0	NA	intron (NM_080823, intron 1 of 7)	intron (NM_080823, intron 1 of 7)	929	NM_080823	6725		NM_080823	ENSG00000125508	SRMS	C20orf148|PTK70|SRM|dJ697K14.1	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding
52504	chr12	56039601	56039800	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2218	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
102390	chr17	75578851	75579480	+	0	NA	Intergenic	MIR|SINE|MIR	-8893	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
194126	chr6	31966971	31967330	+	0	NA	intron (NM_006929, intron 20 of 27).3	intron (NM_006929, intron 20 of 27).3	-4025	NR_026717	8859		NM_004197	ENSG00000204344	STK19	D6S60|D6S60E|G11|HLA-RP1|RP1	serine/threonine kinase 19	protein-coding
90666	chr17	1705701	1705900	+	0	NA	3' UTR (NM_001164407, exon 4 of 4)	3' UTR (NM_001164407, exon 4 of 4)	4577	NM_001164407	727910		NM_001164407	ENSG00000185561	TLCD2	-	TLC domain containing 2	protein-coding
156072	chr22	40030901	40031480	+	0	NA	3' UTR (NM_138435, exon 5 of 5)	3' UTR (NM_138435, exon 5 of 5)	13340	NR_163486	114841040		NR_163486	ENSG00000261202	TNRC6B-DT	-	TNRC6B divergent transcript	ncRNA
123925	chr19	55363651	55364150	+	0	NA	promoter-TSS (NM_001145402)	promoter-TSS (NM_001145402)	-640	NM_001145402	284418		NM_001145402	ENSG00000180043	GARIN5B	C19orf16|FAM71E2	golgi associated RAB2 interactor family member 5B	protein-coding
40725	chr11	64809471	64811530	+	0	NA	promoter-TSS (NM_130801)	promoter-TSS (NM_130801)	51	NM_001370262	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
10326	chr1	64895551	64896150	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	70699	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
141115	chr2	238869801	238870780	+	0	NA	intron (NM_001271893, intron 1 of 1)	(AC)n|Simple_repeat|Simple_repeat	22205	NM_001271893	117581		NM_057179	ENSG00000233608	TWIST2	AMS|BBRSAY|DERMO1|FFDD3|SETLSS|bHLHa39	twist family bHLH transcription factor 2	protein-coding
136418	chr2	176187421	176188480	+	0	NA	promoter-TSS (NM_024501)	promoter-TSS (NM_024501)	319	NR_110461	401022		NR_033979	ENSG00000224189	HAGLR	HOXD-AS1|MIR7704HG|Mdgt|STEEL	HOXD antisense growth-associated long non-coding RNA	ncRNA
203478	chr7	519771	521080	+	0	NA	promoter-TSS (NR_033963)	promoter-TSS (NR_033963)	34	NR_033963	441307		NR_033963	ENSG00000223855	PDGFA-DT	HRAT92	PDGFA divergent transcript	ncRNA
23235	chr1	227769771	227769930	+	0	NA	intron (NR_136655, intron 5 of 5)	intron (NR_136655, intron 5 of 5)	-16962	NR_168381	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
113147	chr19	8338701	8339500	+	0	NA	intron (NM_198471, intron 1 of 10)	L3|LINE|CR1	4162	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
180183	chr5	1482121	1483030	+	0	NA	intron (NM_024830, intron 6 of 13)	G-rich|Low_complexity|Low_complexity	28281	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
144932	chr20	37011901	37012100	+	0	NA	intron (NM_183404, intron 19 of 20)	SVA_D|Retroposon|SVA	-60292	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
182700	chr5	68222351	68223000	+	0	NA	intron (NM_181523, intron 1 of 15)	intron (NM_181523, intron 1 of 15)	6919	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
47781	chr12	6561521	6561780	+	0	NA	intron (NM_001258309, intron 12 of 16)	intron (NM_001258309, intron 12 of 16)	-5608	NM_001330324	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
18732	chr1	167470951	167471050	+	0	NA	intron (NM_198053, intron 1 of 7)	AluSc8|SINE|Alu	47529	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
158734	chr3	8962751	8964000	+	0	NA	promoter-TSS (NM_020165)	promoter-TSS (NM_020165)	97	NM_020165	56852		NM_020165	ENSG00000070950	RAD18	RNF73	RAD18 E3 ubiquitin protein ligase	protein-coding
109880	chr19	1251901	1252500	+	0	NA	intron (NM_177401, intron 4 of 7)	intron (NM_177401, intron 4 of 7)	3647	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
234431	chrX	16841571	16841730	+	0	NA	exon (NM_001168683, exon 8 of 8)	exon (NM_001168683, exon 8 of 8)	28213	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
83962	chr16	29154971	29155950	+	0	NA	Intergenic	L1MD3|LINE|L1	80618	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
174403	chr4	39351951	39352450	+	0	NA	intron (NM_001204747, intron 1 of 24)	intron (NM_001204747, intron 1 of 24)	14162	NM_002913	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
175005	chr4	51874621	51874880	+	0	NA	intron (NM_015115, intron 4 of 9)	intron (NM_015115, intron 4 of 9)	31171	NM_001287755	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
38784	chr11	47214071	47215580	+	0	NA	promoter-TSS (NM_001300734)	promoter-TSS (NM_001300734)	-117	NM_001300734	1643		NM_000107	ENSG00000134574	DDB2	DDBB|UV-DDB2|XPE	damage specific DNA binding protein 2	protein-coding
64295	chr14	23554421	23554750	+	0	NA	intron (NR_046052, intron 2 of 2)	AluJr|SINE|Alu	-1397	NM_001256321	79178		NM_024328	ENSG00000259431	THTPA	THTP|THTPASE	thiamine triphosphatase	protein-coding
42275	chr11	68273651	68274150	+	0	NA	Intergenic	Intergenic	-1927	NM_022338	53838		NM_022338	ENSG00000171067	C11orf24	DM4E3	chromosome 11 open reading frame 24	protein-coding
89038	chr16	88429371	88429530	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-23830	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
149847	chr21	35045121	35046380	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	3552	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
119362	chr19	40118071	40118600	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-27392	NM_001142579	284323		NM_001010880	ENSG00000197782	ZNF780A	ZNF780	zinc finger protein 780A	protein-coding
45513	chr11	118695471	118696480	+	0	NA	Intergenic	MamGypsy2-LTR|LTR|Gypsy	-16325	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
30055	chr10	73820801	73821000	+	0	NA	intron (NM_172171, intron 16 of 20)	AluSq2|SINE|Alu	-9080	NR_160744	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
34437	chr10	132418151	132418450	+	0	NA	TTS (NM_001098637)	TTS (NM_001098637)	21100	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
69698	chr14	98177471	98178030	+	0	NA	Intergenic	Intergenic	-199626	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
99819	chr17	54900451	54900780	+	0	NA	promoter-TSS (NM_001321176)	promoter-TSS (NM_001321176)	-76	NM_001321176	10040		NM_005486	ENSG00000141198	TOM1L1	SRCASM	target of myb1 like 1 membrane trafficking protein	protein-coding
10113	chr1	59063551	59063930	+	0	NA	intron (NR_110626, intron 2 of 2)	LTR50|LTR|ERVL	43264	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
71744	chr15	20646071	20646630	+	0	NA	Intergenic	Intergenic	84001	NR_027411	729786		NR_027411	ENSG00000181984	GOLGA8CP	GOLGA8C	golgin A8 family member C, pseudogene	pseudo
125333	chr2	10809051	10809350	+	0	NA	intron (NM_001282706, intron 2 of 13)	MER33|DNA|hAT-Charlie	3585	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
43994	chr11	94469671	94469830	+	0	NA	intron (NM_005590, intron 9 of 18)	intron (NM_005590, intron 9 of 18)	-3170	NR_031630	100302275		NR_031630	ENSG00000221230	MIR548L	MIRN548L|hsa-mir-548l	microRNA 548l	ncRNA
68431	chr14	81400351	81400450	+	0	NA	intron (NM_001256430, intron 2 of 7)	intron (NM_001256430, intron 2 of 7)	27375	NM_001256430	85439		NM_033104	ENSG00000140022	STON2	STN2|STNB|STNB2	stonin 2	protein-coding
64260	chr14	23236901	23237100	+	0	NA	promoter-TSS (NM_001282322)	promoter-TSS (NM_001282322)	-936	NM_001282322	100507650		NM_001282322	ENSG00000215277	RNF212B	C14orf164	ring finger protein 212B	protein-coding
111176	chr19	3363821	3364280	+	0	NA	intron (NM_205843, intron 1 of 10)	intron (NM_205843, intron 1 of 10)	-2533	NM_001245002	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
114455	chr19	12719871	12720030	+	0	NA	intron (NM_001382240, intron 3 of 25)	intron (NM_001382240, intron 3 of 25)	2309	NM_001382242	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
27937	chr10	42071521	42071780	+	0	NA	Intergenic	Intergenic	296395	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
26602	chr10	22252401	22254300	+	0	NA	non-coding (NR_038921, exon 1 of 1)	non-coding (NR_038921, exon 1 of 1)	1278	NR_038921	100130992		NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
115053	chr19	14151001	14152000	+	0	NA	exon (NM_014921, exon 23 of 23)	exon (NM_014921, exon 23 of 23)	14348	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
211670	chr7	106281401	106281980	+	0	NA	intron (NM_005746, intron 1 of 10)	intron (NM_005746, intron 1 of 10)	3293	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
55555	chr12	105955001	105955400	+	0	NA	Intergenic	Intergenic	184833	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
27455	chr10	31969921	31970180	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-41174	NM_001270695	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
187557	chr5	142782751	142782850	+	0	NA	intron (NM_001349547, intron 1 of 21)	MIRb|SINE|MIR	11573	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
195119	chr6	35664951	35665250	+	0	NA	promoter-TSS (NR_049873)	promoter-TSS (NR_049873)	-311	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
176956	chr4	103092601	103093000	+	0	NA	intron (NM_020139, intron 3 of 9)	intron (NM_020139, intron 3 of 9)	7034	NM_020139	56898		NM_020139	ENSG00000164039	BDH2	DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308	3-hydroxybutyrate dehydrogenase 2	protein-coding
34955	chr11	486251	486550	+	0	NA	intron (NR_138046, intron 4 of 12)	intron (NR_138046, intron 4 of 12)	20368	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
479	chr1	1161721	1161980	+	0	NA	Intergenic	Intergenic	-5254	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
230849	chr9	129107451	129107800	+	0	NA	intron (NM_001346549, intron 2 of 13)	L2b|LINE|L2	3168	NM_001346547	1384		NM_000755	ENSG00000095321	CRAT	CAT|CAT1|NBIA8	carnitine O-acetyltransferase	protein-coding
100847	chr17	64127801	64128330	+	0	NA	intron (NM_001433, intron 1 of 21)	AluSz|SINE|Alu	2079	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
147382	chr20	58634301	58635100	+	0	NA	promoter-TSS (NR_125359)	promoter-TSS (NR_125359)	-72	NR_125359	79160		NM_024314	ENSG00000268941	LINC01711	-	long intergenic non-protein coding RNA 1711	ncRNA
232527	chr9	136331951	136332250	+	0	NA	intron (NM_015597, intron 1 of 8)	intron (NM_015597, intron 1 of 8)	4561	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
102529	chr17	75819271	75819430	+	0	NA	intron (NM_001080419, intron 11 of 15)	intron (NM_001080419, intron 11 of 15)	25054	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
18536	chr1	162068701	162068900	+	0	NA	promoter-TSS (NM_001164757)	promoter-TSS (NM_001164757)	-891	NM_014697	9722		NM_014697	ENSG00000198929	NOS1AP	6330408P19Rik|CAPON|NPHS22	nitric oxide synthase 1 adaptor protein	protein-coding
145692	chr20	45012701	45013200	+	0	NA	intron (NM_006282, intron 9 of 10)	(T)n|Simple_repeat|Simple_repeat	46438	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
234347	chrX	15269871	15270300	+	0	NA	promoter-TSS (NM_001031739)	promoter-TSS (NM_001031739)	-2	NM_001031739	140462		NM_024087	ENSG00000102048	ASB9	-	ankyrin repeat and SOCS box containing 9	protein-coding
214271	chr7	148985871	148986300	+	0	NA	Intergenic	Intergenic	1163	NR_004391	6084		NR_004391	ENSG00000201098	RNY1	HY1|Y1	RNA, Ro60-associated Y1	ncRNA
104349	chr17	80984901	80985300	+	0	NA	Intergenic	Intergenic	-6741	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
176606	chr4	99029951	99030330	+	0	NA	intron (NM_015143, intron 2 of 10)	intron (NM_015143, intron 2 of 10)	32753	NR_037455	100500867		NR_037455	ENSG00000265213	MIR3684	-	microRNA 3684	ncRNA
122068	chr19	48715621	48716230	+	0	NA	intron (NM_182574, intron 1 of 7)	intron (NM_182574, intron 1 of 7)	1032	NM_182574	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
133466	chr2	119783901	119784100	+	0	NA	intron (NM_002830, intron 1 of 26)	MLT1G|LTR|ERVL-MaLR	24078	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
39010	chr11	47738521	47738980	+	0	NA	intron (NM_015308, intron 8 of 16)	AluSz6|SINE|Alu	-23381	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
234223	chrX	12997571	12998880	+	0	NA	Intergenic	Intergenic	23115	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
169265	chr3	157201671	157201930	+	0	NA	Intergenic	Intergenic	-41653	NM_001308185	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
44140	chr11	96136171	96137150	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-204778	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
96606	chr17	40545621	40546080	+	0	NA	Intergenic	Intergenic	14544	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
24673	chr1	247124801	247125000	+	0	NA	intron (NM_001243740, intron 3 of 3)	AluJb|SINE|Alu	-12483	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
95835	chr17	38809301	38809630	+	0	NA	intron (NM_017748, intron 6 of 9)	intron (NM_017748, intron 6 of 9)	-9560	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
86940	chr16	68106521	68107050	+	0	NA	intron (NM_173165, intron 1 of 9)	L1PA10|LINE|L1	21415	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
232845	chr9	136768621	136769130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4357	NM_203347	389812		NM_203347	ENSG00000177984	LCN15	PRO6093|UNQ2541	lipocalin 15	protein-coding
42622	chr11	72224601	72226550	+	0	NA	intron (NM_001567, intron 1 of 27)	intron (NM_001567, intron 1 of 27)	808	NM_001567	3636		NM_001567	ENSG00000165458	INPPL1	OPSMD|SHIP2	inositol polyphosphate phosphatase like 1	protein-coding
192793	chr6	26568051	26569430	+	0	NA	promoter-TSS (NR_134611)	promoter-TSS (NR_134611)	-584	NR_134611	105374988		NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
113072	chr19	8240101	8240900	+	0	NA	intron (NM_024552, intron 2 of 11)	intron (NM_024552, intron 2 of 11)	31130	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
100525	chr17	62473021	62473280	+	0	NA	Intergenic	Intergenic	-4661	NM_001375271	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
232370	chr9	135889151	135889650	+	0	NA	intron (NM_015447, intron 1 of 16)	L1MEg|LINE|L1	18146	NM_015447	157922		NM_015447	ENSG00000130559	CAMSAP1	CDCBM12	calmodulin regulated spectrin associated protein 1	protein-coding
219963	chr8	89732001	89732200	+	0	NA	intron (NR_125822, intron 1 of 4)	L1M1|LINE|L1	25611	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
168489	chr3	143301571	143301730	+	0	NA	intron (NM_173653, intron 14 of 15)	intron (NM_173653, intron 14 of 15)	-40596	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
78482	chr15	92909201	92909930	+	0	NA	intron (NM_001042572, intron 2 of 12)	intron (NM_001042572, intron 2 of 12)	5166	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
66167	chr14	60637371	60638000	+	0	NA	Intergenic	CpG	-1531	NR_126480	104548971		NR_126480		SALRNA1	SAL-RNA1|XLOC_023166	senescence associated long non-coding RNA 1	ncRNA
85882	chr16	57052671	57053030	+	0	NA	intron (NM_001384955, intron 24 of 47)	intron (NM_001384955, intron 24 of 47)	-39733	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
225932	chr9	40649671	40650100	+	0	NA	Intergenic	CpG	149904	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
97748	chr17	44399051	44399350	+	0	NA	exon (NM_001002909, exon 8 of 8)	exon (NM_001002909, exon 8 of 8)	-9551	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
157757	chr22	46680701	46681430	+	0	NA	intron (NM_001366660, intron 17 of 17)	intron (NM_001366660, intron 17 of 17)	57187	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
133498	chr2	119944071	119944430	+	0	NA	intron (NM_002830, intron 15 of 26)	intron (NM_002830, intron 15 of 26)	-68827	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
122096	chr19	48749521	48750180	+	0	NA	3' UTR (NM_000148, exon 4 of 4)	3' UTR (NM_000148, exon 4 of 4)	2791	NM_001384359	2523		NM_000148	ENSG00000174951	FUT1	H|HH|HSC	fucosyltransferase 1 (H blood group)	protein-coding
171842	chr4	700721	700980	+	0	NA	Intergenic	Intergenic	-4982	NM_006315	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
67014	chr14	67508571	67508730	+	0	NA	intron (NM_001348549, intron 1 of 3)	AluJr|SINE|Alu	6565	NM_001348544	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
161419	chr3	41246821	41247280	+	0	NA	intron (NM_017886, intron 36 of 36)	intron (NM_017886, intron 36 of 36)	47545	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
186076	chr5	134095971	134096330	+	0	NA	Intergenic	Intergenic	-18531	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
105445	chr17	82971201	82971400	+	0	NA	intron (NR_135465, intron 6 of 13)	CpG	35688	NR_135466	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
156147	chr22	40176551	40178140	+	0	NA	promoter-TSS (NM_001162501)	promoter-TSS (NM_001162501)	-580	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
104043	chr17	80136551	80136650	+	0	NA	intron (NM_014740, intron 9 of 11)	intron (NM_014740, intron 9 of 11)	10528	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
27306	chr10	30455751	30456700	+	0	NA	intron (NM_001320961, intron 5 of 7)	L1MB1|LINE|L1	21579	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
31442	chr10	95834351	95834850	+	0	NA	intron (NM_001164183, intron 2 of 7)	intron (NM_001164183, intron 2 of 7)	-73375	NM_001349008	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
216917	chr8	22708751	22709330	+	0	NA	Intergenic	(TCACCA)n|Simple_repeat|Simple_repeat	-15560	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
23058	chr1	226627801	226628680	+	0	NA	Intergenic	Intergenic	46828	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
46247	chr11	124738571	124738880	+	0	NA	Intergenic	Intergenic	-1217	NM_006176	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
213979	chr7	142803351	142803750	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	32580	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
192694	chr6	26287651	26287950	+	0	NA	Intergenic	Intergenic	-2266	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
204324	chr7	2715001	2715580	+	0	NA	3' UTR (NM_133463, exon 7 of 7)	3' UTR (NM_133463, exon 7 of 7)	27088	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
67837	chr14	73935271	73935430	+	0	NA	intron (NM_152445, intron 8 of 8)	AluY|SINE|Alu	-14584	NM_182480	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
58575	chr12	132441651	132441950	+	0	NA	Intergenic	Intergenic	-48351	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
185675	chr5	131640121	131640780	+	0	NA	Intergenic	Intergenic	-5221	NM_016340	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
149525	chr21	32933671	32934080	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-25013	NR_135522	102724502		NR_135522	ENSG00000228961	LINC01690	-	long intergenic non-protein coding RNA 1690	ncRNA
22765	chr1	224400721	224400980	+	0	NA	intron (NM_001115113, intron 9 of 13)	intron (NM_001115113, intron 9 of 13)	-2539	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
229490	chr9	122216751	122217250	+	0	NA	intron (NM_199160, intron 5 of 8)	G-rich|Low_complexity|Low_complexity	4740	NM_001242335	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
235748	chrX	48950951	48951850	+	0	NA	intron (NM_001136159, intron 1 of 8)	AluYf1|SINE|Alu	6207	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
73350	chr15	42159251	42159550	+	0	NA	3' UTR (NM_015289, exon 25 of 25)	3' UTR (NM_015289, exon 25 of 25)	-2764	NR_033151	255189		NM_213600	ENSG00000168907	PLA2G4F	PLA2G4FZ	phospholipase A2 group IVF	protein-coding
72830	chr15	40128101	40128300	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-19321	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
97971	chr17	45252501	45253250	+	0	NA	intron (NR_110325, intron 2 of 4)	L1MC1|LINE|L1	4950	NR_110326	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
229761	chr9	125188001	125188350	+	0	NA	intron (NM_001123369, intron 1 of 5)	AluY|SINE|Alu	1628	NM_002721	5537		NM_002721	ENSG00000119414	PPP6C	PP6|PP6C	protein phosphatase 6 catalytic subunit	protein-coding
115359	chr19	15226221	15226630	+	0	NA	TTS (NM_001142886)	TTS (NM_001142886)	6023	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
50798	chr12	49058071	49058580	+	0	NA	intron (NM_003482, intron 1 of 54)	intron (NM_003482, intron 1 of 54)	2469	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
51096	chr12	50027471	50027830	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2093	NM_001320004	29127		NM_013277	ENSG00000161800	RACGAP1	CDAN3B|CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
130824	chr2	87066871	87067330	+	0	NA	intron (NR_026846, intron 1 of 10)	intron (NR_026846, intron 1 of 10)	9313	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
203795	chr7	1251021	1251280	+	0	NA	Intergenic	Intergenic	18278	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
125039	chr2	9603871	9604500	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	26812	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
97302	chr17	43227721	43228200	+	0	NA	intron (NM_001363254, intron 1 of 3)	AluSp|SINE|Alu	663	NM_001363254	100874261		NM_001363254	ENSG00000236383	CCDC200	LINC00854|TMEM106A-AS1	coiled-coil domain containing 200	protein-coding
4574	chr1	22063771	22063930	+	0	NA	intron (NM_044472, intron 1 of 5)	AluSz6|SINE|Alu	11141	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
202544	chr6	158640221	158640900	+	0	NA	intron (NM_001291602, intron 1 of 3)	intron (NM_001291602, intron 1 of 3)	4183	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
227808	chr9	93186971	93187330	+	0	NA	intron (NM_001282394, intron 1 of 29)	intron (NM_001282394, intron 1 of 29)	2220	NM_006648	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
210246	chr7	99388001	99388450	+	0	NA	exon (NM_005720, exon 4 of 10)	exon (NM_005720, exon 4 of 10)	13495	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
22790	chr1	224433401	224434200	+	0	NA	promoter-TSS (NR_136288)	promoter-TSS (NR_136288)	-840	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
37201	chr11	14323071	14323430	+	0	NA	intron (NM_001177314, intron 1 of 5)	AluJb|SINE|Alu	35235	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
201775	chr6	149959751	149960230	+	0	NA	Intergenic	AluJo|SINE|Alu	-3953	NM_001317089	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
199106	chr6	111678971	111679400	+	0	NA	intron (NM_001370529, intron 10 of 11)	L2c|LINE|L2	-72911	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
180458	chr5	10639271	10639430	+	0	NA	intron (NM_001164440, intron 3 of 3)	CpG	75280	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
11433	chr1	89762171	89763900	+	0	NA	Intergenic	Intergenic	-57997	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
113168	chr19	8390701	8392730	+	0	NA	intron (NM_004218, intron 1 of 4)	intron (NM_004218, intron 1 of 4)	-1024	NR_038237	100507567		NR_038237	ENSG00000269386	RAB11B-AS1	MIR4999HG	RAB11B antisense RNA 1	ncRNA
186227	chr5	134395801	134396000	+	0	NA	Intergenic	Intergenic	15981	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
194242	chr6	32459801	32460200	+	0	NA	Intergenic	Intergenic	20113	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
153634	chr22	28770071	28770730	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2274	NM_001284263	150275		NM_173510	ENSG00000159873	CCDC117	dJ366L4.1	coiled-coil domain containing 117	protein-coding
128818	chr2	62800651	62800750	+	0	NA	intron (NM_001142616, intron 5 of 22)	LTR82A|LTR|ERVL	93803	NM_001354217	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
104376	chr17	81023621	81024600	+	0	NA	Intergenic	Intergenic	10609	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
93122	chr17	17712471	17712830	+	0	NA	intron (NM_030665, intron 1 of 5)	L2a|LINE|L2	31192	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
5254	chr1	25025421	25025950	+	0	NA	Intergenic	Intergenic	2182	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
186343	chr5	134746701	134747330	+	0	NA	intron (NM_001745, intron 3 of 3)	AluSx|SINE|Alu	8467	NM_001745	819		NM_001745	ENSG00000164615	CAMLG	CAML|CDG2Z|GET2	calcium modulating ligand	protein-coding
12405	chr1	101312291	101313380	+	0	NA	Intergenic	Intergenic	-11002	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
12891	chr1	110343621	110344250	+	0	NA	intron (NM_001201545, intron 1 of 1)	intron (NM_001201545, intron 1 of 1)	4558	NM_022768	64783		NM_014092	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding
122404	chr19	49438151	49438680	+	0	NA	intron (NM_020309, intron 1 of 11)	intron (NM_020309, intron 1 of 11)	3112	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
112451	chr19	6377651	6378230	+	0	NA	Intergenic	AluSz|SINE|Alu	-2024	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
141903	chr20	856151	856800	+	0	NA	Intergenic	Intergenic	11832	NM_031424	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
207744	chr7	48096001	48096650	+	0	NA	intron (NM_001287429, intron 3 of 5)	intron (NM_001287429, intron 3 of 5)	7060	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
148202	chr20	63561721	63562400	+	0	NA	intron (NM_033405, intron 5 of 13)	intron (NM_033405, intron 5 of 13)	5694	NM_033405	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
140556	chr2	233281651	233282450	+	0	NA	intron (NM_001190266, intron 11 of 17).2	intron (NM_001190266, intron 11 of 17).2	6324	NR_003008	677775		NR_003008	ENSG00000252010	SCARNA5	U87	small Cajal body-specific RNA 5	ncRNA
166511	chr3	114328521	114329100	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-12241	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
8721	chr1	42462701	42463780	+	0	NA	promoter-TSS (NM_001355224)	promoter-TSS (NM_001355224)	-46	NM_001355227	728621		NM_001080850	ENSG00000186409	CCDC30	PFD6L|PFDN6L	coiled-coil domain containing 30	protein-coding
230876	chr9	129182671	129182900	+	0	NA	Intergenic	Intergenic	-4524	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
170434	chr3	185899871	185900430	+	0	NA	Intergenic	Intergenic	37864	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
206154	chr7	27901051	27901780	+	0	NA	intron (NM_175061, intron 2 of 4)	intron (NM_175061, intron 2 of 4)	161320	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
12198	chr1	100383671	100384230	+	0	NA	intron (NM_001319210, intron 3 of 16)	intron (NM_001319210, intron 3 of 16)	31444	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
145918	chr20	46006401	46007000	+	0	NA	Intergenic	Intergenic	-2208	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
166836	chr3	122975101	122975930	+	0	NA	intron (NR_046079, intron 1 of 22)	MIRb|SINE|MIR	619	NM_001256347	54437		NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
141653	chr2	241758571	241759480	+	0	NA	intron (NM_001352824, intron 9 of 9)	L1MEd|LINE|L1	-17797	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
165364	chr3	91891251	91891350	+	0	NA	Intergenic	ACRO1|Satellite|acro	2082596	NM_000313	5627		NM_000313	ENSG00000184500	PROS1	PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6	protein S	protein-coding
35284	chr11	963871	964400	+	0	NA	intron (NR_144509, intron 2 of 20)	intron (NR_144509, intron 2 of 20)	38265	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
211999	chr7	114084301	114084900	+	0	NA	Intergenic	Intergenic	-1727	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
121888	chr19	48362751	48363500	+	0	NA	intron (NM_001303539, intron 2 of 6)	MIR1_Amn|SINE|MIR	815	NM_001303538	55260		NM_018273	ENSG00000161558	TMEM143	-	transmembrane protein 143	protein-coding
14581	chr1	145188151	145188250	+	0	NA	intron (NR_156690, intron 1 of 3)	AluSx1|SINE|Alu	-20593	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
220486	chr8	100491271	100491950	+	0	NA	Intergenic	Intergenic	68149	NM_001270379	157567		NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding
158082	chr22	49979451	49980130	+	0	NA	Intergenic	L1MDa|LINE|L1	16924	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
59701	chr13	29592071	29592230	+	0	NA	intron (NM_003045, intron 1 of 12)	intron (NM_003045, intron 1 of 12)	3538	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
212275	chr7	123624601	123624950	+	0	NA	exon (NM_001290258, exon 8 of 12)	exon (NM_001290258, exon 8 of 12)	182	NR_111922	102724555		NR_111922	ENSG00000230442	ASB15-AS1	-	ASB15 antisense RNA 1	ncRNA
139443	chr2	223762901	223763100	+	0	NA	intron (NM_001039569, intron 4 of 4)	intron (NM_001039569, intron 4 of 4)	74582	NM_001039569	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
81517	chr16	9039351	9039450	+	0	NA	Intergenic	Intergenic	-52244	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
47465	chr12	3872651	3873880	+	0	NA	non-coding (NR_104461, exon 1 of 9)	non-coding (NR_104461, exon 1 of 9)	134	NM_001286522	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
111149	chr19	3289951	3290630	+	0	NA	exon (NM_001172673, exon 11 of 12)	exon (NM_001172673, exon 11 of 12)	65012	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
153733	chr22	29305821	29306500	+	0	NA	promoter-TSS (NM_001278730)	promoter-TSS (NM_001278730)	-863	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
166497	chr3	114310571	114311330	+	0	NA	TTS (NM_173799)	TTS (NM_173799)	5619	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
197593	chr6	80163821	80164230	+	0	NA	intron (NM_000056, intron 3 of 10)	L2a|LINE|L2	57354	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
54764	chr12	94123601	94124400	+	0	NA	Intergenic	Intergenic	-24577	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
225505	chr9	35675251	35676330	+	0	NA	exon (NM_001216, exon 3 of 11)	exon (NM_001216, exon 3 of 11)	1862	NM_001216	768		NM_001216	ENSG00000107159	CA9	CAIX|MN	carbonic anhydrase 9	protein-coding
154253	chr22	31615751	31615850	+	0	NA	intron (NM_001007467, intron 29 of 32)	L2a|LINE|L2	5731	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
138675	chr2	213016901	213017100	+	0	NA	intron (NM_001371276, intron 6 of 7)	MLT1K|LTR|ERVL-MaLR	-90664	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
131478	chr2	96485401	96487200	+	0	NA	Intergenic	Intergenic	19057	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
179231	chr4	174156371	174156530	+	0	NA	intron (NR_125896, intron 1 of 4)	intron (NR_125896, intron 1 of 4)	63948	NR_125896	101928509		NR_125896	ENSG00000248174	LINC02268	-	long intergenic non-protein coding RNA 2268	ncRNA
146175	chr20	48746971	48747400	+	0	NA	intron (NM_020820, intron 2 of 39)	intron (NM_020820, intron 2 of 39)	80814	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
127238	chr2	38669101	38669300	+	0	NA	intron (NM_138801, intron 1 of 6)	LTR2|LTR|ERV1	3086	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
178921	chr4	158810001	158810880	+	0	NA	intron (NM_001366843, intron 1 of 17)	intron (NM_001366843, intron 1 of 17)	4601	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
23126	chr1	226696671	226697730	+	0	NA	intron (NM_002221, intron 2 of 7)	MIRb|SINE|MIR	-22132	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
74477	chr15	59838451	59838950	+	0	NA	Intergenic	Intergenic	-149380	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
53875	chr12	70255571	70255730	+	0	NA	intron (NR_037615, intron 1 of 16)	intron (NR_037615, intron 1 of 16)	11936	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
109556	chr19	883271	883950	+	0	NA	intron (NM_005481, intron 6 of 15)	intron (NM_005481, intron 6 of 15)	9577	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
141754	chr2	241925651	241926150	+	0	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	-23315	NM_001382369	285095		NM_001382368	ENSG00000216921	FAM240C	-	family with sequence similarity 240 member C	protein-coding
47490	chr12	3972171	3972890	+	0	NA	Intergenic	L2a|LINE|L2	-99082	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
66369	chr14	61472931	61473500	+	0	NA	intron (NM_006255, intron 9 of 13)	L2c|LINE|L2	96979	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
151012	chr21	44454621	44456350	+	0	NA	promoter-TSS (NM_030891)	promoter-TSS (NM_030891)	-25	NM_030891	81543		NM_030891	ENSG00000160233	LRRC3	C21orf102|C21orf30|LRRC3DN	leucine rich repeat containing 3	protein-coding
99443	chr17	50128821	50131680	+	0	NA	promoter-TSS (NM_001257359)	promoter-TSS (NM_001257359)	-90	NM_174920	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
142628	chr20	5614171	5614800	+	0	NA	Intergenic	Intergenic	-3479	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
111092	chr19	3190201	3190650	+	0	NA	intron (NM_020170, intron 1 of 14)	intron (NM_020170, intron 1 of 14)	4495	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
64486	chr14	24309101	24309300	+	0	NA	promoter-TSS (NM_019839)	promoter-TSS (NM_019839)	-940	NM_019839	56413		NM_019839	ENSG00000213906	LTB4R2	BLT2|BLTR2|JULF2|KPG_004|LTB4-R 2|LTB4-R2|NOP9	leukotriene B4 receptor 2	protein-coding
7210	chr1	32293851	32294830	+	0	NA	intron (NM_004964, intron 1 of 13)	AluSz|SINE|Alu	2257	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
207643	chr7	45048771	45049080	+	0	NA	intron (NM_001363458, intron 2 of 10)	intron (NM_001363458, intron 2 of 10)	21291	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
152557	chr22	21011951	21013150	+	0	NA	intron (NR_003608, intron 1 of 2)	intron (NR_003608, intron 1 of 2)	1737	NR_003608	113691		NR_003608	ENSG00000284130	TUBA3FP	-	tubulin alpha 3f pseudogene	pseudo
37886	chr11	34046171	34046530	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-5381	NM_005898	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
77519	chr15	84696901	84697100	+	0	NA	intron (NM_001271920, intron 1 of 6)	AluJo|SINE|Alu	19139	NM_014300	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
195060	chr6	35501371	35501930	+	0	NA	intron (NM_001289395, intron 12 of 13)	AluSz|SINE|Alu	-4571	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
5982	chr1	26959751	26960950	+	0	NA	5' UTR (NM_152365, exon 1 of 4)	5' UTR (NM_152365, exon 1 of 4)	118	NM_152365	126695		NM_152365	ENSG00000175707	KDF1	C1orf172|ECTD12	keratinocyte differentiation factor 1	protein-coding
210279	chr7	99419071	99419230	+	0	NA	3' UTR (NM_001198879, exon 9 of 9)	3' UTR (NM_001198879, exon 9 of 9)	9978	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
237727	chrX	126165821	126166080	+	0	NA	5' UTR (NM_001013628, exon 1 of 1)	5' UTR (NM_001013628, exon 1 of 1)	339	NM_001013628	340578		NM_001013628	ENSG00000198354	DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12 like 2	protein-coding
100341	chr17	59894671	59895880	+	0	NA	intron (NM_001272044, intron 2 of 15)	AluSc8|SINE|Alu	2154	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
107729	chr18	50009821	50010100	+	0	NA	intron (NM_001080467, intron 4 of 39)	intron (NM_001080467, intron 4 of 39)	116603	NR_036204	100422865		NR_036204	ENSG00000283343	MIR4320	-	microRNA 4320	ncRNA
84857	chr16	31140751	31140950	+	0	NA	intron (NM_173502, intron 12 of 14)	intron (NM_173502, intron 12 of 14)	-5123	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
203822	chr7	1412171	1413250	+	0	NA	Intergenic	Intergenic	46760	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
60601	chr13	42043771	42044130	+	0	NA	intron (NM_001204504, intron 1 of 29)	AluJo|SINE|Alu	3914	NM_001204504	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
182757	chr5	68289501	68289800	+	0	NA	intron (NM_181524, intron 1 of 9)	intron (NM_181524, intron 1 of 9)	-1014	NM_181504	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
94705	chr17	30696601	30696800	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	-12908	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
72728	chr15	38690501	38691430	+	0	NA	Intergenic	Intergenic	-5633	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
6816	chr1	30934171	30934330	+	0	NA	intron (NM_014676, intron 21 of 21)	intron (NM_014676, intron 21 of 21)	1526	NR_033295	692235		NR_033295		SNORD103B	U103B	small nucleolar RNA, C/D box 103B	snoRNA
32870	chr10	110083071	110083230	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	68830	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
51326	chr12	51330771	51330950	+	0	NA	intron (NM_001971, intron 6 of 7)	AluY|SINE|Alu	-6192	NM_001290007	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
183533	chr5	79980921	79981380	+	0	NA	3' UTR (NM_001167741, exon 8 of 8)	3' UTR (NM_001167741, exon 8 of 8)	10112	NM_001363818	345778		NM_001010891	ENSG00000177034	MTX3	-	metaxin 3	protein-coding
9334	chr1	46612101	46612500	+	0	NA	intron (NM_201403, intron 2 of 3)	intron (NM_201403, intron 2 of 3)	2833	NM_145279	148932		NM_145279	ENSG00000142961	MOB3C	MOB1E|MOBKL2C	MOB kinase activator 3C	protein-coding
162973	chr3	49699421	49700100	+	0	NA	exon (NM_022064, exon 12 of 39)	exon (NM_022064, exon 12 of 39)	10203	NM_022064	63891		NM_022064	ENSG00000164068	RNF123	FP1477|KPC1	ring finger protein 123	protein-coding
213946	chr7	142701071	142701550	+	0	NA	intron (NM_001130026, intron 10 of 10)	MER73|LTR|ERVL	35011	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
205182	chr7	7637751	7637850	+	0	NA	intron (NM_002947, intron 7 of 7)	intron (NM_002947, intron 7 of 7)	-2952	NM_001302349	729852		NM_001302348	ENSG00000219545	UMAD1	RPA3-AS1|RPA3OS	UBAP1-MVB12-associated (UMA) domain containing 1	protein-coding
234841	chrX	24478271	24478430	+	0	NA	intron (NM_001142386, intron 1 of 11)	AluSz|SINE|Alu	13064	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
149341	chr21	29063971	29064130	+	0	NA	intron (NM_006585, intron 7 of 14)	AluSc5|SINE|Alu	9598	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
153116	chr22	23694471	23694630	+	0	NA	non-coding (NR_024448, exon 8 of 12)	non-coding (NR_024448, exon 8 of 12)	-1866	NM_001329425	266747		NM_153615	ENSG00000159496	RGL4	Rgr	ral guanine nucleotide dissociation stimulator like 4	protein-coding
113196	chr19	8435671	8436030	+	0	NA	intron (NR_163145, intron 3 of 3)	(TG)n|Simple_repeat|Simple_repeat	-9125	NM_005968	4670		NM_005968	ENSG00000099783	HNRNPM	CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M	heterogeneous nuclear ribonucleoprotein M	protein-coding
186049	chr5	134055051	134055550	+	0	NA	Intergenic	Intergenic	-50325	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
43068	chr11	74581271	74581430	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-11232	NR_046409	10714		NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
213690	chr7	140162871	140163030	+	0	NA	intron (NM_030647, intron 1 of 19)	L1MC5|LINE|L1	14033	NM_030647	80853		NM_030647	ENSG00000006459	KDM7A	JHDM1D	lysine demethylase 7A	protein-coding
92079	chr17	7527001	7527200	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-21958	NM_003809	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
4824	chr1	23616551	23616650	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-10734	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
76711	chr15	75902171	75902530	+	0	NA	Intergenic	LTR75_1|LTR|ERV1	-1509	NM_012170	26263		NM_012170	ENSG00000167196	FBXO22	FBX22|FISTC1	F-box protein 22	protein-coding
56181	chr12	111429821	111430500	+	0	NA	intron (NM_005475, intron 2 of 7)	intron (NM_005475, intron 2 of 7)	-4702	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
42755	chr11	72724921	72726250	+	0	NA	intron (NM_001040118, intron 3 of 34)	intron (NM_001040118, intron 3 of 34)	-3227	NM_001135190	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
49932	chr12	39710801	39711080	+	0	NA	intron (NR_135051, intron 11 of 18)	L1PB1|LINE|L1	84757	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
227977	chr9	95312901	95313300	+	0	NA	intron (NM_001243744, intron 1 of 13)	LTR41|LTR|ERVL	4154	NM_001243743	2176		NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	FA complementation group C	protein-coding
225164	chr9	33821401	33821600	+	0	NA	intron (NM_017811, intron 1 of 4)	intron (NM_017811, intron 1 of 4)	4340	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
39641	chr11	61567121	61567800	+	0	NA	intron (NM_001370211, intron 1 of 7)	intron (NM_001370211, intron 1 of 7)	13412	NM_001252065	9066		NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding
12356	chr1	101234771	101235800	+	0	NA	non-coding (NR_104626, exon 2 of 2)	non-coding (NR_104626, exon 2 of 2)	1243	NR_104626	101928370		NR_104626		S1PR1-DT	LISPR1	S1PR1 divergent transcript	ncRNA
13836	chr1	117633921	117634180	+	0	NA	Intergenic	Intergenic	28002	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
211124	chr7	102528371	102529130	+	0	NA	Intergenic	Intergenic	-10973	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
186192	chr5	134217251	134217350	+	0	NA	intron (NM_002715, intron 1 of 6)	AluSp|SINE|Alu	8254	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
159875	chr3	16837821	16838080	+	0	NA	Intergenic	Intergenic	-47005	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
56888	chr12	120305351	120305850	+	0	NA	intron (NM_012240, intron 2 of 3)	LTR16E2|LTR|ERVL	3279	NM_012240	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
122172	chr19	48899771	48900700	+	0	NA	promoter-TSS (NM_006184)	promoter-TSS (NM_006184)	-77	NM_006184	4924		NM_006184	ENSG00000104805	NUCB1	CALNUC|NUC	nucleobindin 1	protein-coding
52713	chr12	56592121	56593280	+	0	NA	3' UTR (NM_002898, exon 14 of 14)	3' UTR (NM_002898, exon 14 of 14)	37626	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
108171	chr18	62884371	62884930	+	0	NA	intron (NM_194449, intron 4 of 16)	intron (NM_194449, intron 4 of 16)	169109	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
72183	chr15	29268751	29270100	+	0	NA	exon (NM_138704, exon 1 of 1)	exon (NM_138704, exon 1 of 1)	397	NM_138704	56160		NM_138704	ENSG00000185115	NSMCE3	HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3	NSE3 homolog, SMC5-SMC6 complex component	protein-coding
159340	chr3	13077971	13079000	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	-5056	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
163275	chr3	50311271	50311430	+	0	NA	intron (NM_153281, intron 1 of 5)	SVA_D|Retroposon|SVA	1031	NM_153281	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
37231	chr11	14499051	14501380	+	0	NA	promoter-TSS (NM_001144062)	promoter-TSS (NM_001144062)	-346	NM_001144062	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
53984	chr12	74900201	74900700	+	0	NA	Intergenic	Eulor9A|DNA|DNA	309298	NM_139136	3747		NM_139136	ENSG00000166006	KCNC2	DEE103|KV3.2	potassium voltage-gated channel subfamily C member 2	protein-coding
125339	chr2	10815771	10816130	+	0	NA	intron (NM_001282706, intron 2 of 13)	L1MB4|LINE|L1	-3111	NM_001282707	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
97332	chr17	43266071	43267130	+	0	NA	TTS (NR_002716).6	TTS (NR_002716).6	223	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
80321	chr16	2425401	2425600	+	0	NA	intron (NR_003574, intron 16 of 16)	intron (NR_003574, intron 16 of 16)	-3947	NM_001761	899		NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1|FTDALS5	cyclin F	protein-coding
12612	chr1	109090371	109091800	+	0	NA	intron (NR_136243, intron 1 of 1)	intron (NR_136243, intron 1 of 1)	321	NR_136242	56900		NM_020141	ENSG00000215717	TMEM167B	AD-020|C1orf119	transmembrane protein 167B	protein-coding
56463	chr12	116055951	116056350	+	0	NA	intron (NM_015335, intron 4 of 30)	intron (NM_015335, intron 4 of 30)	92504	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
115059	chr19	14165851	14167140	+	0	NA	intron (NM_014921, intron 4 of 22)	intron (NM_014921, intron 4 of 22)	29343	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
28960	chr10	63237971	63238700	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	30888	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
86023	chr16	57500521	57501230	+	0	NA	Intergenic	Intergenic	-14382	NM_018110	55715		NM_018110	ENSG00000125170	DOK4	IRS-5|IRS5	docking protein 4	protein-coding
72800	chr15	40053351	40053450	+	0	NA	intron (NR_040060, intron 2 of 2)	intron (NR_040060, intron 2 of 2)	14089	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
139476	chr2	224039111	224040000	+	0	NA	promoter-TSS (NM_001136530)	promoter-TSS (NM_001136530)	-236	NM_006216	5270		NM_006216	ENSG00000135919	SERPINE2	GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI	serpin family E member 2	protein-coding
57266	chr12	121592451	121592550	+	0	NA	Intergenic	Intergenic	-4029	NR_049838	100847078		NR_049838	ENSG00000265470	MIR548AQ	-	microRNA 548aq	ncRNA
207676	chr7	45111401	45112680	+	0	NA	promoter-TSS (NM_001261834)	promoter-TSS (NM_001261834)	-293	NM_199122	9238		NM_004749	ENSG00000136270	TBRG4	CPR2|FASTKD4	transforming growth factor beta regulator 4	protein-coding
174409	chr4	39365621	39366900	+	0	NA	5' UTR (NM_001363495, exon 1 of 24)	5' UTR (NM_001363495, exon 1 of 24)	102	NM_002913	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
87385	chr16	70454021	70455850	+	0	NA	intron (NM_145059, intron 1 of 23)	intron (NM_145059, intron 1 of 23)	340	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
107170	chr18	35412601	35412800	+	0	NA	Intergenic	Intergenic	-35363	NM_001322291	252884		NM_145756	ENSG00000186496	ZNF396	ZSCAN14	zinc finger protein 396	protein-coding
67807	chr14	73774371	73775150	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	12448	NM_001043318	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
101558	chr17	68027701	68027900	+	0	NA	Intergenic	AluY|SINE|Alu	-7935	NM_002266	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
204024	chr7	1922051	1922650	+	0	NA	intron (NM_001304524, intron 15 of 16)	L1MD|LINE|L1	18221	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
28995	chr10	63305571	63305730	+	0	NA	intron (NM_001322258, intron 2 of 24)	(GT)n|Simple_repeat|Simple_repeat	-36407	NM_001322254	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
72461	chr15	32394801	32395000	+	0	NA	intron (NM_001282493, intron 13 of 18)	intron (NM_001282493, intron 13 of 18)	1347	NR_135833	101928042		NR_135833		ARHGAP11A-DT	-	ARHGAP11A divergent transcript	ncRNA
63829	chr14	21483721	21483980	+	0	NA	intron (NM_014828, intron 2 of 8)	AluSz6|SINE|Alu	6655	NM_001303523	9878		NM_014828	ENSG00000092203	TOX4	C14orf92|KIAA0737|LCP1|MIG7	TOX high mobility group box family member 4	protein-coding
21763	chr1	206913471	206914550	+	0	NA	exon (NM_005449, exon 2 of 8)	exon (NM_005449, exon 2 of 8)	7931	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
135628	chr2	168198621	168198950	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	48810	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
215952	chr8	8383801	8384600	+	0	NA	intron (NR_163138, intron 1 of 6)	intron (NR_163138, intron 1 of 6)	2044	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
27336	chr10	30591001	30591730	+	0	NA	Intergenic	Intergenic	38388	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
186376	chr5	134926271	134926530	+	0	NA	intron (NM_032151, intron 2 of 3)	intron (NM_032151, intron 2 of 3)	21269	NM_032151	84105		NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
20541	chr1	198697871	198698230	+	0	NA	intron (NM_002838, intron 4 of 32)	intron (NM_002838, intron 4 of 32)	59010	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
104343	chr17	80971951	80972450	+	0	NA	promoter-TSS (NR_148968)	promoter-TSS (NR_148968)	-987	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
191108	chr6	4018001	4019350	+	0	NA	Intergenic	CpG	-2625	NM_003913	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
234229	chrX	13008251	13008550	+	0	NA	Intergenic	Intergenic	33290	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
104227	chr17	80667901	80668550	+	0	NA	intron (NM_020761, intron 3 of 33)	intron (NM_020761, intron 3 of 33)	123387	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
122396	chr19	49430271	49430950	+	0	NA	exon (NM_020309, exon 12 of 12)	exon (NM_020309, exon 12 of 12)	5222	NM_001195256	100507003		NM_001195256	ENSG00000261949	GFY	Goofy	golgi associated olfactory signaling regulator	protein-coding
8625	chr1	41679551	41680250	+	0	NA	intron (NM_001127714, intron 1 of 7)	intron (NM_001127714, intron 1 of 7)	-195217	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
176111	chr4	83043901	83044100	+	0	NA	intron (NM_001330727, intron 1 of 10)	Tigger15a|DNA|TcMar-Tigger	8817	NM_016129	51138		NM_016129	ENSG00000138663	COPS4	CSN4|SGN4	COP9 signalosome subunit 4	protein-coding
85757	chr16	56847201	56848000	+	0	NA	3' UTR (NM_001242795, exon 20 of 20)	3' UTR (NM_001242795, exon 20 of 20)	-10918	NR_029680	406930		NR_029680	ENSG00000207649	MIR138-2	MIRN138-2|mir-138-2	microRNA 138-2	ncRNA
232070	chr9	133477751	133478050	+	0	NA	intron (NM_017585, intron 2 of 9)	intron (NM_017585, intron 2 of 9)	1199	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
215602	chr7	159030621	159030900	+	0	NA	exon (NM_001304522, exon 11 of 11)	exon (NM_001304522, exon 11 of 11)	22406	NR_024394	154822		NM_198345	ENSG00000231419	LINC00689	STORM	long intergenic non-protein coding RNA 689	ncRNA
113372	chr19	8755801	8756000	+	0	NA	Intergenic	AluJb|SINE|Alu	24946	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
36268	chr11	3791351	3791450	+	0	NA	intron (NR_157590, intron 1 of 31)	AluSq10|SINE|Alu	6146	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
132918	chr2	111421351	111421450	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	73761	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
195113	chr6	35642551	35643050	+	0	NA	exon (NM_001145777, exon 2 of 7)	exon (NM_001145777, exon 2 of 7)	21989	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
13281	chr1	112903921	112904250	+	0	NA	Intergenic	LTR8|LTR|ERV1	-19265	NR_002796	246182		NR_002796		AKR7A2P1	AFARP1	AKR7A2 pseudogene 1	pseudo
230843	chr9	129100951	129101450	+	0	NA	intron (NM_001346547, intron 6 of 13)	MIRb|SINE|MIR	9593	NM_001346547	1384		NM_000755	ENSG00000095321	CRAT	CAT|CAT1|NBIA8	carnitine O-acetyltransferase	protein-coding
129886	chr2	73156671	73157030	+	0	NA	Intergenic	Intergenic	-43902	NM_015470	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
190795	chr6	797551	797880	+	0	NA	Intergenic	Intergenic	-70783	NR_110853	101927691		NR_110853		LOC101927691	-	uncharacterized LOC101927691	ncRNA
91499	chr17	4933901	4934630	+	0	NA	exon (NM_000173, exon 2 of 2)	exon (NM_000173, exon 2 of 2)	1988	NM_000173	2811		NM_000173	ENSG00000185245	GP1BA	BDPLT1|BDPLT3|BSS|CD42B|CD42b-alpha|DBPLT3|GP1B|GPIbA|GPIbalpha|VWDP	glycoprotein Ib platelet subunit alpha	protein-coding
102523	chr17	75815071	75815730	+	0	NA	intron (NM_001080419, intron 7 of 15)	intron (NM_001080419, intron 7 of 15)	29004	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
95491	chr17	36253901	36254750	+	0	NA	exon (NM_001291465, exon 14 of 14).4	exon (NM_001291465, exon 14 of 14).4	10188	NM_001291465	101060389		NM_001123390	ENSG00000274419	TBC1D3D	PRC17|TBC1D3|TBC1D3A|TBC1D3H	TBC1 domain family member 3D	protein-coding
95805	chr17	38732671	38733280	+	0	NA	TTS (NM_001369615)	TTS (NM_001369615)	2634	NM_001136498	284106		NM_001136498	ENSG00000277972	CISD3	MiNT|Miner2	CDGSH iron sulfur domain 3	protein-coding
96636	chr17	40600171	40600330	+	0	NA	Intergenic	AluJb|SINE|Alu	-34778	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
129507	chr2	69637901	69638500	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	5538	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
177920	chr4	131726151	131726650	+	0	NA	Intergenic	SST1|Satellite|centr	-38438	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
162690	chr3	48941771	48942500	+	0	NA	intron (NM_001349214, intron 3 of 15)	AluSx1|SINE|Alu	-22750	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
88777	chr16	87278601	87278930	+	0	NA	intron (NR_104667, intron 3 of 4)	intron (NR_104667, intron 3 of 4)	13687	NR_104667	101928682		NR_104667	ENSG00000261697	LOC101928682	-	uncharacterized LOC101928682	ncRNA
104049	chr17	80142351	80142680	+	0	NA	intron (NM_014740, intron 2 of 11)	AluJr|SINE|Alu	4613	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
223771	chr8	144534051	144535000	+	0	NA	intron (NM_001308207, intron 7 of 11)	intron (NM_001308207, intron 7 of 11)	-5414	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
234047	chrX	4253171	4253330	+	0	NA	Intergenic	Intergenic	-332508	NR_146578	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
15523	chr1	150510901	150511300	+	0	NA	exon (NM_001202858, exon 6 of 10)	exon (NM_001202858, exon 6 of 10)	2991	NM_004425	1893		NM_004425	ENSG00000143369	ECM1	URBWD	extracellular matrix protein 1	protein-coding
122368	chr19	49359621	49359880	+	0	NA	intron (NM_001256662, intron 1 of 11)	MIR|SINE|MIR	1767	NM_001256661	8463		NM_003598	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain transcription factor 2	protein-coding
161413	chr3	41243221	41243930	+	0	NA	Intergenic	Intergenic	44070	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
150251	chr21	41427921	41428180	+	0	NA	intron (NM_001178046, intron 2 of 14)	AluSz6|SINE|Alu	1811	NM_002462	4599		NM_002462	ENSG00000157601	MX1	IFI-78K|IFI78|MX|MxA|lncMX1-215	MX dynamin like GTPase 1	protein-coding
18506	chr1	161763421	161764130	+	0	NA	Intergenic	Intergenic	-2545	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
78024	chr15	89898501	89899030	+	0	NA	3' UTR (NM_182616, exon 6 of 6)	3' UTR (NM_182616, exon 6 of 6)	-4771	NR_023361	10239		NM_005829	ENSG00000157823	AP3S2	AP3S3|sigma3b	adaptor related protein complex 3 subunit sigma 2	protein-coding
55864	chr12	109393751	109394050	+	0	NA	intron (NM_001101421, intron 2 of 30)	intron (NM_001101421, intron 2 of 30)	5181	NM_001101421	283446		NM_173597	ENSG00000174527	MYO1H	CCHS2	myosin IH	protein-coding
77751	chr15	85753701	85753900	+	0	NA	Intergenic	Intergenic	4925	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
140250	chr2	232113901	232114100	+	0	NA	intron (NR_046477, intron 6 of 18)	LTR8|LTR|ERV1	-58653	NR_030288	693147		NR_030288	ENSG00000207626	MIR562	MIRN562|hsa-mir-562	microRNA 562	ncRNA
40123	chr11	62825621	62825980	+	0	NA	intron (NM_001244666, intron 5 of 10)	OldhAT1|DNA|hAT-Ac	6251	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
236502	chrX	71783951	71784650	+	0	NA	promoter-TSS (NR_034004).2	promoter-TSS (NR_034004).2	78	NR_034004	100132741		NR_034004		LOC100132741	-	uncharacterized LOC100132741	ncRNA
147082	chr20	53835251	53836050	+	0	NA	Intergenic	MER68|LTR|ERVL	40059	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
165408	chr3	97881051	97881150	+	0	NA	exon (NM_153605, exon 7 of 22)	exon (NM_153605, exon 7 of 22)	59089	NM_153605	131544		NM_153605	ENSG00000080200	CRYBG3	DKFZp667G2110|vlAKAP	crystallin beta-gamma domain containing 3	protein-coding
192799	chr6	26578471	26578630	+	0	NA	Intergenic	L1PA16|LINE|L1	9226	NR_134611	105374988		NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
104192	chr17	80454121	80456830	+	0	NA	Intergenic	CpG	21132	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
168483	chr3	143183051	143183350	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	63429	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
219969	chr8	89756321	89756580	+	0	NA	intron (NR_125822, intron 1 of 4)	AluSg|SINE|Alu	1261	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
40788	chr11	64889751	64889850	+	0	NA	TTS (NR_133638)	TTS (NR_133638)	1446	NR_029578	406967		NR_029578	ENSG00000283926	MIR192	MIRN192|miR-192|miRNA192	microRNA 192	ncRNA
204942	chr7	6272101	6273430	+	0	NA	promoter-TSS (NM_001367580)	promoter-TSS (NM_001367580)	-141	NM_004227	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
41086	chr11	65521071	65521430	+	0	NA	Intergenic	AluY|SINE|Alu	-3833	NM_001048218	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
216984	chr8	23092271	23093030	+	0	NA	intron (NR_046173, intron 2 of 3)	intron (NR_046173, intron 2 of 3)	8295	NR_046173	254896		NR_046173	ENSG00000284948	LOC254896	-	uncharacterized LOC254896	ncRNA
179810	chr5	430801	431250	+	0	NA	intron (NR_165159, intron 11 of 13)	intron (NR_165159, intron 11 of 13)	12135	NR_126522	116349		NM_138464		EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA
26632	chr10	22475871	22476730	+	0	NA	Intergenic	CpG	-38371	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
27907	chr10	41893451	41894180	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	474230	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
157202	chr22	43144301	43144500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1002	NM_173467	27349		NM_014507	ENSG00000100294	MCAT	FASN2C|MCT|MCT1|MT|NET62|OPA15|fabD	malonyl-CoA-acyl carrier protein transacylase	protein-coding
115353	chr19	15221721	15221980	+	0	NA	Intergenic	L2a|LINE|L2	10598	NM_024794	79852		NM_024794	ENSG00000105131	EPHX3	ABHD9|EH3	epoxide hydrolase 3	protein-coding
125033	chr2	9595551	9595930	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	35257	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
68401	chr14	80959171	80960400	+	0	NA	intron (NM_001142626, intron 1 of 8)	intron (NM_001142626, intron 1 of 8)	4164	NM_001142626	7253		NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding
124435	chr19	58479501	58480700	+	0	NA	intron (NM_001304453, intron 5 of 5)	intron (NM_001304453, intron 5 of 5)	2921	NM_001304453	55663		NM_017908	ENSG00000083838	ZNF446	ZKSCAN20|ZSCAN30|ZSCAN52	zinc finger protein 446	protein-coding
68895	chr14	91339621	91340230	+	0	NA	exon (NM_001080414, exon 7 of 30)	exon (NM_001080414, exon 7 of 30)	77895	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
34407	chr10	132393421	132393950	+	0	NA	Intergenic	Intergenic	-3515	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
23929	chr1	235091051	235091550	+	0	NA	Intergenic	MIR3|SINE|MIR	-21482	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
59120	chr13	21330271	21330830	+	0	NA	intron (NR_103840, intron 2 of 5)	intron (NR_103840, intron 2 of 5)	11514	NR_144554	2871		NR_144554		GRK6P1	GPRK6L|GPRK6P|GRK6PS	G protein-coupled receptor kinase 6 pseudogene 1	pseudo
109250	chr19	518771	519980	+	0	NA	exon (NM_033513, exon 2 of 2)	exon (NM_033513, exon 2 of 2)	11878	NM_033513	91978		NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding
195736	chr6	39309971	39310200	+	0	NA	intron (NM_001135111, intron 2 of 5)	intron (NM_001135111, intron 2 of 5)	4334	NM_031460	89822		NM_031460	ENSG00000124780	KCNK17	K2p17.1|TALK-2|TALK2|TASK-4|TASK4	potassium two pore domain channel subfamily K member 17	protein-coding
159454	chr3	13896401	13896930	+	0	NA	Intergenic	Intergenic	-16594	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
226681	chr9	75089771	75090280	+	0	NA	intron (NM_012383, intron 1 of 9)	intron (NM_012383, intron 1 of 9)	1511	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
41273	chr11	65846001	65846830	+	0	NA	intron (NM_152760, intron 1 of 12)	AluSp|SINE|Alu	11765	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
89008	chr16	87983921	87984180	+	0	NA	intron (NM_001173543, intron 3 of 13)	intron (NM_001173543, intron 3 of 13)	6897	NM_001384940	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
213973	chr7	142797011	142797650	+	0	NA	intron (NM_001130026, intron 10 of 10)	CpG	26360	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
119062	chr19	39126821	39127080	+	0	NA	intron (NM_001014834, intron 1 of 7)	MIRb|SINE|MIR	1164	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
134244	chr2	135048221	135048480	+	0	NA	Intergenic	Intergenic	-3942	NM_001172435	22930		NM_012233	ENSG00000115839	RAB3GAP1	MARTS2|P130|RAB3GAP|RAB3GAP130|WARBM1	RAB3 GTPase activating protein catalytic subunit 1	protein-coding
162946	chr3	49537351	49537650	+	0	NA	Intergenic	AluY|SINE|Alu	16866	NR_038866	100132677		NR_038866	ENSG00000226913	BSN-DT	BSN-AS2	BSN divergent transcript	ncRNA
35693	chr11	1916971	1917200	+	0	NA	Intergenic	Intergenic	-2618	NM_001042781	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
68860	chr14	91303001	91304150	+	0	NA	intron (NM_001080414, intron 20 of 29)	intron (NM_001080414, intron 20 of 29)	-49695	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
76559	chr15	75214571	75214730	+	0	NA	Intergenic	Intergenic	12768	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
116528	chr19	18189551	18190200	+	0	NA	Intergenic	AluSx|SINE|Alu	-3343	NM_032683	84769		NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial inner membrane protein like 2	protein-coding
233921	chrX	1763551	1763800	+	0	NA	Intergenic	Intergenic	148542	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
3217	chr1	13766101	13766700	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	16985	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
214826	chr7	151245011	151246280	+	0	NA	exon (NM_001003801, exon 2 of 13)	exon (NM_001003801, exon 2 of 13)	3049	NM_001003801	6604		NM_003078	ENSG00000082014	SMARCD3	BAF60C|CRACD3|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
143422	chr20	29752701	29753700	+	0	NA	Intergenic	Intergenic	-127184	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
175305	chr4	68303371	68303730	+	0	NA	Intergenic	AluJo|SINE|Alu	46540	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
32088	chr10	101135951	101136350	+	0	NA	intron (NM_005521, intron 2 of 2)	intron (NM_005521, intron 2 of 2)	4850	NM_005521	3195		NM_005521	ENSG00000107807	TLX1	HOX11|TCL3	T cell leukemia homeobox 1	protein-coding
84991	chr16	31464071	31464450	+	0	NA	intron (NM_024742, intron 3 of 3)	AluJr|SINE|Alu	4759	NM_001105247	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
159040	chr3	11288451	11290280	+	0	NA	intron (NM_001349234, intron 2 of 19)	intron (NM_001349234, intron 2 of 19)	16968	NM_001144912	10533		NM_006395	ENSG00000197548	ATG7	APG7-LIKE|APG7L|GSA7|SCAR31	autophagy related 7	protein-coding
69112	chr14	92515571	92516250	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	2129	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
51674	chr12	53067051	53067150	+	0	NA	intron (NM_032840, intron 8 of 10)	AluSx|SINE|Alu	10156	NR_106815	102466193		NR_106815	ENSG00000278108	MIR6757	hsa-mir-6757	microRNA 6757	ncRNA
190822	chr6	1525501	1525850	+	0	NA	Intergenic	MIR3|SINE|MIR	-79856	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
13806	chr1	117605071	117606500	+	0	NA	promoter-TSS (NR_121626)	promoter-TSS (NR_121626)	-15	NR_121626	100996263		NR_121626	ENSG00000236866	TENT5C-DT	-	TENT5C divergent transcript	ncRNA
4484	chr1	21619801	21620000	+	0	NA	intron (NM_001350524, intron 6 of 27)	intron (NM_001350524, intron 6 of 27)	31998	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
211993	chr7	114048021	114048700	+	0	NA	Intergenic	MER21-int|LTR|ERVL	-37967	NR_033766	93986		NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding
71185	chr14	105052951	105053430	+	0	NA	intron (NM_001278696, intron 1 of 1)	AluSx|SINE|Alu	12240	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
141659	chr2	241767551	241768450	+	0	NA	non-coding (NR_109778, exon 8 of 8)	non-coding (NR_109778, exon 8 of 8)	-8822	NM_022134	64090		NM_022134	ENSG00000154252	GAL3ST2	GAL3ST-2|GP3ST	galactose-3-O-sulfotransferase 2	protein-coding
48950	chr12	12736451	12737700	+	0	NA	intron (NM_001130415, intron 1 of 1)	intron (NM_001130415, intron 1 of 1)	11158	NM_001130415	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
51715	chr12	53205301	53206250	+	0	NA	intron (NM_000889, intron 1 of 15)	intron (NM_000889, intron 1 of 15)	1476	NR_104181	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
114874	chr19	13875951	13876250	+	0	NA	intron (NR_146097, intron 1 of 1)	intron (NR_146097, intron 1 of 1)	-1149	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
218292	chr8	42386401	42387050	+	0	NA	Intergenic	AluJr|SINE|Alu	-5036	NM_001135694	7419		NM_005662	ENSG00000078668	VDAC3	HD-VDAC3|VDAC-3	voltage dependent anion channel 3	protein-coding
75012	chr15	64013821	64014080	+	0	NA	intron (NM_001385000, intron 2 of 11)	intron (NM_001385000, intron 2 of 11)	32535	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
49902	chr12	39444321	39444580	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-1330	NM_017641	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
41753	chr11	66685901	66687030	+	0	NA	intron (NM_006946, intron 36 of 37)	intron (NM_006946, intron 36 of 37)	-8578	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
186349	chr5	134813401	134813930	+	0	NA	intron (NR_125341, intron 18 of 22)	AluJr|SINE|Alu	-32015	NM_152409	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
49371	chr12	22394701	22394900	+	0	NA	Intergenic	L1PA16|LINE|L1	-60086	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
199611	chr6	119331801	119332080	+	0	NA	intron (NM_005907, intron 2 of 12)	MIRb|SINE|MIR	17821	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
132692	chr2	108965321	108966000	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	23560	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
26415	chr10	17183271	17183430	+	0	NA	intron (NM_001351223, intron 1 of 11)	HAL1b|LINE|L1	18322	NM_001321006	1787		NM_004412	ENSG00000107614	TRDMT1	DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1	tRNA aspartic acid methyltransferase 1	protein-coding
149041	chr21	15005371	15006080	+	0	NA	intron (NM_003489, intron 3 of 3)	intron (NM_003489, intron 3 of 3)	59275	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
141909	chr20	959121	959380	+	0	NA	3' UTR (NM_001040007, exon 4 of 4)	3' UTR (NM_001040007, exon 4 of 4)	-42916	NM_015985	51378		NM_015985	ENSG00000101280	ANGPT4	ANG3|ANG4	angiopoietin 4	protein-coding
25580	chr10	8034651	8035000	+	0	NA	Intergenic	CpG	17666	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
38145	chr11	35392071	35392780	+	0	NA	intron (NM_001252652, intron 1 of 11)	intron (NM_001252652, intron 1 of 11)	27133	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
82659	chr16	19520901	19522700	+	0	NA	non-coding (NR_136689, exon 1 of 6)	non-coding (NR_136689, exon 1 of 6)	298	NM_016641	51573		NM_016641	ENSG00000006007	GDE1	363E6.2|MIR16	glycerophosphodiester phosphodiesterase 1	protein-coding
80091	chr16	2005501	2006180	+	0	NA	intron (NM_178167, intron 3 of 13)	intron (NM_178167, intron 3 of 13)	3981	NM_178167	90850		NM_178167	ENSG00000167962	ZNF598	HEL2	zinc finger protein 598, E3 ubiquitin ligase	protein-coding
57480	chr12	122076401	122076600	+	0	NA	Intergenic	AluJb|SINE|Alu	-2256	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
84782	chr16	31009871	31010030	+	0	NA	intron (NM_052874, intron 1 of 9)	intron (NM_052874, intron 1 of 9)	688	NM_052874	112755		NM_052874	ENSG00000099365	STX1B	GEFSP9|STX1B1|STX1B2	syntaxin 1B	protein-coding
148757	chr21	7956151	7956250	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	-126568	NM_001330065	102723475		NM_001330065	ENSG00000276289	LOC102723475	KCNE1B	potassium voltage-gated channel subfamily E regulatory subunit 1B	protein-coding
160975	chr3	37174751	37175190	+	0	NA	promoter-TSS (NM_001348307)	promoter-TSS (NM_001348307)	-80	NM_001348307	9209		NM_006309	ENSG00000093167	LRRFIP2	HUFI-2	LRR binding FLII interacting protein 2	protein-coding
215420	chr7	157622051	157622750	+	0	NA	intron (NM_130842, intron 13 of 21)	intron (NM_130842, intron 13 of 21)	-47978	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
88257	chr16	82651721	82652600	+	0	NA	intron (NM_001220488, intron 2 of 14)	intron (NM_001220488, intron 2 of 14)	25191	NM_001220492	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
52476	chr12	55969701	55970230	+	0	NA	intron (NM_001798, intron 5 of 6)	CR1_Mam|LINE|CR1	3135	NM_001290230	1017		NM_001798	ENSG00000123374	CDK2	CDKN2|p33(CDK2)	cyclin dependent kinase 2	protein-coding
207649	chr7	45061921	45062380	+	0	NA	intron (NM_001363458, intron 2 of 10)	L1MCa|LINE|L1	26819	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
86393	chr16	66695171	66695530	+	0	NA	intron (NM_178818, intron 1 of 4)	AluJb|SINE|Alu	1393	NM_181521	146223		NM_178818	ENSG00000183723	CMTM4	CKLFSF4	CKLF like MARVEL transmembrane domain containing 4	protein-coding
175667	chr4	76957021	76958380	+	0	NA	intron (NM_018243, intron 1 of 9)	intron (NM_018243, intron 1 of 9)	7948	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
137647	chr2	197420151	197420250	+	0	NA	3' UTR (NM_001308824, exon 4 of 4)	3' UTR (NM_001308824, exon 4 of 4)	14828	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
236935	chrX	98693021	98693280	+	0	NA	Intergenic	L1PA2|LINE|L1	-1128615	NR_125391	10824		NR_125391	ENSG00000236256	DIAPH2-AS1	EPAG	DIAPH2 antisense RNA 1	ncRNA
221460	chr8	124442021	124442280	+	0	NA	Intergenic	Intergenic	-8670	NM_017956	55039		NM_017956	ENSG00000183665	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog	protein-coding
63595	chr14	20482821	20483480	+	0	NA	Intergenic	Intergenic	13744	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
56070	chr12	110585001	110585730	+	0	NA	Intergenic	Intergenic	-2047	NM_139283	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
209447	chr7	76436571	76436930	+	0	NA	intron (NM_007155, intron 6 of 8)	intron (NM_007155, intron 6 of 8)	11800	NM_001110354	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
139449	chr2	223847421	223847680	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-9968	NR_110905	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
221791	chr8	127963021	127963780	+	0	NA	intron (NR_003367, intron 3 of 8)	L2b|LINE|L2	2767	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
197599	chr6	80605551	80605650	+	0	NA	Intergenic	Intergenic	498929	NM_183050	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
153739	chr22	29310871	29311780	+	0	NA	intron (NM_001278730, intron 5 of 5)	intron (NM_001278730, intron 5 of 5)	4302	NM_006478	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
94735	chr17	30781971	30782130	+	0	NA	TTS (NR_073118)	TTS (NR_073118)	42642	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
111143	chr19	3282871	3283230	+	0	NA	intron (NM_021938, intron 8 of 12)	AluSx|SINE|Alu	57772	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
33047	chr10	110857121	110857880	+	0	NA	Intergenic	Intergenic	13404	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
60631	chr13	42356421	42356680	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-68342	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
1148	chr1	2189101	2190450	+	0	NA	promoter-TSS (NR_168005)	promoter-TSS (NR_168005)	-23	NR_168005	112268219		NR_168005		LOC112268219	-	uncharacterized LOC112268219	ncRNA
154259	chr22	31620701	31621150	+	0	NA	TTS (NR_106959)	TTS (NR_106959)	606	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
119178	chr19	39420671	39420830	+	0	NA	intron (NM_022835, intron 12 of 18)	intron (NM_022835, intron 12 of 18)	6971	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
195360	chr6	36676001	36676200	+	0	NA	promoter-TSS (NM_001374509)	promoter-TSS (NM_001374509)	-363	NM_001220777	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
63560	chr14	20400101	20400300	+	0	NA	intron (NM_007110, intron 9 of 54)	intron (NM_007110, intron 9 of 54)	13301	NM_007110	7011		NM_007110	ENSG00000129566	TEP1	TLP1|TP1|TROVE1|VAULT2|p240	telomerase associated protein 1	protein-coding
100041	chr17	58006151	58008750	+	0	NA	promoter-TSS (NR_034041)	promoter-TSS (NR_034041)	-104	NR_034041	6426		NM_006924	ENSG00000136450	SRSF1	ASF|NEDFBA|SF2|SF2p33|SFRS1|SRp30a	serine and arginine rich splicing factor 1	protein-coding
77271	chr15	81480601	81481000	+	0	NA	Intergenic	Intergenic	-106587	NM_001080532	342125		NM_181841	ENSG00000188869	TMC3	-	transmembrane channel like 3	protein-coding
210540	chr7	100265871	100266030	+	0	NA	intron (NR_166147, intron 1 of 4)	AluSx1|SINE|Alu	6255	NR_028038	352954		NM_178831	ENSG00000291122	CASTOR3P	CASTOR3|GATS|STAG3OS	CASTOR family member 3, pseudogene	pseudo
7213	chr1	32297271	32297850	+	0	NA	intron (NM_004964, intron 1 of 13)	AluJb|SINE|Alu	5477	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
153865	chr22	30247701	30247900	+	0	NA	TTS (NR_148946)	TTS (NR_148946)	-1041	NM_002309	3976		NM_002309	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	LIF interleukin 6 family cytokine	protein-coding
993	chr1	1840701	1840900	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	50287	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
183539	chr5	80083401	80084180	+	0	NA	promoter-TSS (NR_109930)	promoter-TSS (NR_109930)	-125	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
8677	chr1	41912051	41912350	+	0	NA	intron (NR_038260, intron 1 of 2)	L1ME3E|LINE|L1	6722	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
162979	chr3	49705571	49706250	+	0	NA	intron (NR_135218, intron 24 of 38)	intron (NR_135218, intron 24 of 38)	13774	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
111392	chr19	3749551	3749850	+	0	NA	intron (NM_001267560, intron 19 of 20)	intron (NM_001267560, intron 19 of 20)	11992	NM_004886	9546		NM_004886	ENSG00000011132	APBA3	MGC:15815|X11L2|mint3	amyloid beta precursor protein binding family A member 3	protein-coding
89173	chr16	88545801	88546030	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-14862	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
151312	chr21	45551471	45552230	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	-9410	NM_001205206	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
90824	chr17	2283271	2283430	+	0	NA	intron (NM_017575, intron 7 of 18)	intron (NM_017575, intron 7 of 18)	-17165	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
12957	chr1	110877701	110878400	+	0	NA	intron (NM_001040033, intron 2 of 8)	MIRb|SINE|MIR	4902	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
177452	chr4	113547471	113548280	+	0	NA	intron (NM_001321583, intron 5 of 18)	intron (NM_001321583, intron 5 of 18)	213863	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
128195	chr2	53959101	53959550	+	0	NA	intron (NM_014614, intron 1 of 46)	AluSz6|SINE|Alu	11668	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
39766	chr11	61902671	61902830	+	0	NA	intron (NM_001271686, intron 6 of 8)	intron (NM_001271686, intron 6 of 8)	-11205	NM_021727	3995		NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
107723	chr18	49819321	49820900	+	0	NA	intron (NR_117096, intron 1 of 3)	intron (NR_117096, intron 1 of 3)	6087	NR_117096	103091864		NR_117096	ENSG00000267322	SNHG22	SCARNA17|SCARNA17HG	small nucleolar RNA host gene 22	ncRNA
210273	chr7	99413651	99414300	+	0	NA	intron (NM_001370410, intron 3 of 5)	U13|snRNA|snRNA	4803	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
194518	chr6	33297121	33297400	+	0	NA	intron (NM_001243738, intron 1 of 16)	intron (NM_001243738, intron 1 of 16)	1682	NM_004761	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
68529	chr14	89067221	89067750	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	242834	NM_001366535	123016		NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding
117258	chr19	19450151	19450730	+	0	NA	intron (NM_001384516, intron 2 of 12)	intron (NM_001384516, intron 2 of 12)	15377	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
181425	chr5	40808101	40808500	+	0	NA	Intergenic	MamTip3|DNA|hAT-Tip100	-10105	NM_001355034	5562		NM_006251	ENSG00000132356	PRKAA1	AMPK|AMPK alpha 1|AMPKa1	protein kinase AMP-activated catalytic subunit alpha 1	protein-coding
179204	chr4	173373751	173373850	+	0	NA	intron (NM_003864, intron 2 of 3)	intron (NM_003864, intron 2 of 3)	2846	NM_003864	8819		NM_003864	ENSG00000164105	SAP30	-	Sin3A associated protein 30	protein-coding
61650	chr13	73922821	73923080	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	210979	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
188628	chr5	157213371	157214050	+	0	NA	intron (NM_005546, intron 3 of 16)	Charlie15a|DNA|hAT-Charlie	32870	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
59731	chr13	29848521	29848900	+	0	NA	intron (NM_007106, intron 1 of 4)	intron (NM_007106, intron 1 of 4)	1907	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
230221	chr9	127861901	127863350	+	0	NA	Intergenic	Intergenic	6870	NR_039819	100616429		NR_039819	ENSG00000263979	MIR4672	-	microRNA 4672	ncRNA
85277	chr16	48587071	48587430	+	0	NA	intron (NM_153029, intron 1 of 6)	LTR37-int|LTR|ERV1	22930	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
158382	chr22	50488071	50489730	+	0	NA	intron (NM_017584, intron 5 of 9)	intron (NM_017584, intron 5 of 9)	2041	NM_017584	55586		NM_017584	ENSG00000100253	MIOX	ALDRL6	myo-inositol oxygenase	protein-coding
70682	chr14	103094701	103094900	+	0	NA	Intergenic	Intergenic	-5344	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
218127	chr8	41576051	41576530	+	0	NA	intron (NR_125824, intron 1 of 2)	AluSg|SINE|Alu	-1910	NM_178819	137964		NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
165064	chr3	71456171	71457000	+	0	NA	intron (NM_001012505, intron 3 of 6)	MIR|SINE|MIR	85504	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
239424	chrY	56682721	56683200	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-271295	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
143600	chr20	31708171	31708530	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	-13157	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
170401	chr3	185282521	185283550	+	0	NA	promoter-TSS (NR_038322)	promoter-TSS (NR_038322)	74	NM_001242317	9175		NM_004721	ENSG00000073803	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding
46898	chr11	134073601	134073800	+	0	NA	intron (NM_032801, intron 1 of 8)	intron (NM_032801, intron 1 of 8)	4628	NM_032801	83700		NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
78394	chr15	91914221	91914300	+	0	NA	intron (NR_135775, intron 1 of 10)	MIR|SINE|MIR	59956	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
153951	chr22	30348351	30348650	+	0	NA	intron (NM_005877, intron 2 of 15)	intron (NM_005877, intron 2 of 15)	-8124	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
51927	chr12	53699421	53699930	+	0	NA	Intergenic	Intergenic	-23345	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
66054	chr14	58353501	58354650	+	0	NA	intron (NM_023000, intron 17 of 23)	MER90a|LTR|ERV1	-41855	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
228945	chr9	113378821	113379130	+	0	NA	Intergenic	MER39B|LTR|ERV1	-1989	NM_001371923	81932		NM_031219	ENSG00000119431	HDHD3	2810435D12Rik|C9orf158	haloacid dehalogenase like hydrolase domain containing 3	protein-coding
104076	chr17	80230351	80230730	+	0	NA	intron (NM_001166348, intron 6 of 16)	intron (NM_001166348, intron 6 of 16)	10113	NM_001166348	284129		NM_173626	ENSG00000181045	SLC26A11	-	solute carrier family 26 member 11	protein-coding
120890	chr19	45586301	45586880	+	0	NA	Intergenic	Intergenic	-1788	NM_001017989	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
143950	chr20	32796621	32797080	+	0	NA	exon (NM_001207056, exon 10 of 18)	exon (NM_001207056, exon 10 of 18)	16998	NM_175850	1789		NM_006892	ENSG00000088305	DNMT3B	FSHD4|ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding
12435	chr1	103529701	103530080	+	0	NA	intron (NM_017619, intron 2 of 14)	MER1B|DNA|hAT-Charlie	4191	NM_017619	55599		NM_017619	ENSG00000185946	RNPC3	CPHD7|IGHD5|RBM40|RNP|SNRNP65	RNA binding region (RNP1, RRM) containing 3	protein-coding
186043	chr5	134043601	134044000	+	0	NA	Intergenic	AluJb|SINE|Alu	-38825	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
45970	chr11	121457001	121457450	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	4911	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
11403	chr1	89695901	89696980	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	63320	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
66542	chr14	61796901	61797150	+	0	NA	TTS (NM_003082)	TTS (NM_003082)	-15137	NM_001367650	83851		NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r	synaptotagmin 16	protein-coding
161295	chr3	39350521	39351180	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	21141	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
153601	chr22	27804571	27805130	+	0	NA	Intergenic	Intergenic	-3094	NM_002430	4330		NM_002430	ENSG00000169184	MN1	CEBALID|MGCR|MGCR1|MGCR1-PEN|dJ353E16.2	MN1 proto-oncogene, transcriptional regulator	protein-coding
182202	chr5	56830251	56831130	+	0	NA	intron (NM_005921, intron 1 of 19)	Tigger19a|DNA|TcMar-Tigger	15141	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
107624	chr18	48938451	48938550	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	4307	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
46191	chr11	123432851	123433600	+	0	NA	intron (NM_001367421, intron 2 of 20)	AluSq2|SINE|Alu	2956	NM_001354837	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
108432	chr18	69959251	69959350	+	0	NA	Intergenic	Intergenic	-2501	NM_006566	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
122431	chr19	49468151	49469800	+	0	NA	exon (NM_153329, exon 16 of 17)	exon (NM_153329, exon 16 of 17)	-5240	NM_001204502	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
83831	chr16	28860171	28860530	+	0	NA	intron (NM_001308293, intron 1 of 10)	AluSx|SINE|Alu	-3407	NM_001145797	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
82351	chr16	15960721	15962230	+	0	NA	intron (NM_004996, intron 1 of 30)	intron (NM_004996, intron 1 of 30)	11859	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
214595	chr7	150666921	150667330	+	0	NA	Intergenic	Intergenic	-18581	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
127392	chr2	41854951	41855050	+	0	NA	Intergenic	Intergenic	-22555	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
163484	chr3	50687121	50687730	+	0	NA	intron (NM_004947, intron 1 of 52)	Charlie3|DNA|hAT-Charlie	12345	NR_039950	100616138		NR_039950	ENSG00000272543	MIR4787	mir-4787	microRNA 4787	ncRNA
2189	chr1	8544871	8545340	+	0	NA	intron (NM_012102, intron 7 of 23)	Charlie2a|DNA|hAT-Charlie	-50192	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
7173	chr1	32258101	32258330	+	0	NA	intron (NM_005356, intron 1 of 12)	AluJo|SINE|Alu	6950	NM_001330468	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
58633	chr12	132504371	132504750	+	0	NA	promoter-TSS (NM_001382742)	promoter-TSS (NM_001382742)	-846	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
147734	chr20	62395101	62395500	+	0	NA	intron (NM_031215, intron 3 of 9)	intron (NM_031215, intron 3 of 9)	8197	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
68370	chr14	77757471	77757830	+	0	NA	intron (NM_001318844, intron 1 of 12)	L2c|LINE|L2	-3118	NR_161324	283579		NM_174943	ENSG00000197734	C14orf178	-	chromosome 14 open reading frame 178	ncRNA
121258	chr19	46689071	46689430	+	0	NA	intron (NM_001079881, intron 15 of 18)	AluY|SINE|Alu	20104	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
157185	chr22	43067421	43067680	+	0	NA	intron (NR_027779, intron 6 of 11)	intron (NR_027779, intron 6 of 11)	21841	NM_012263	25809		NM_012263	ENSG00000100271	TTLL1	C22orf7|HS323M22B|TPGS3	TTL family tubulin polyglutamylase complex subunit L1	protein-coding
219806	chr8	81285221	81285780	+	0	NA	TTS (NM_001444)	TTS (NM_001444)	4964	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
197577	chr6	79869601	79870200	+	0	NA	Intergenic	Intergenic	-57654	NR_131786	89758		NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
166473	chr3	114237101	114237930	+	0	NA	promoter-TSS (NM_007136)	promoter-TSS (NM_007136)	63	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
83138	chr16	23096421	23096680	+	0	NA	intron (NM_020718, intron 6 of 15)	L1P2|LINE|L1	52720	NM_020718	57478		NM_020718	ENSG00000103404	USP31	-	ubiquitin specific peptidase 31	protein-coding
55	chr1	267501	268350	+	0	NA	Intergenic	Intergenic	-61328	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
116739	chr19	18468621	18468950	+	0	NA	intron (NM_006532, intron 2 of 11)	intron (NM_006532, intron 2 of 11)	-30652	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
29396	chr10	70143251	70144080	+	0	NA	intron (NM_173555, intron 2 of 3)	intron (NM_173555, intron 2 of 3)	1063	NR_073595	219743		NM_173555	ENSG00000156521	TYSND1	NET41	trypsin like peroxisomal matrix peptidase 1	protein-coding
69951	chr14	99676501	99677450	+	0	NA	3' UTR (NM_001127258, exon 9 of 9)	3' UTR (NM_001127258, exon 9 of 9)	-7323	NM_006668	10858		NM_006668	ENSG00000036530	CYP46A1	CP46|CYP46	cytochrome P450 family 46 subfamily A member 1	protein-coding
60339	chr13	40765971	40766330	+	0	NA	intron (NM_005830, intron 2 of 6)	intron (NM_005830, intron 2 of 6)	5040	NM_005830	10240		NM_005830	ENSG00000102738	MRPS31	IMOGN38|MRP-S31|S31mt|mS31	mitochondrial ribosomal protein S31	protein-coding
230433	chr9	128153951	128154530	+	0	NA	TTS (NM_005564)	TTS (NM_005564)	4787	NM_005564	3934		NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL|p25	lipocalin 2	protein-coding
15202	chr1	149260201	149260400	+	0	NA	Intergenic	Intergenic	-59154	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
125682	chr2	20325901	20326390	+	0	NA	intron (NM_015317, intron 2 of 20)	intron (NM_015317, intron 2 of 20)	1241	NM_001282791	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
39562	chr11	61127971	61128300	+	0	NA	TTS (NM_014207)	TTS (NM_014207)	25646	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
105763	chr18	2780401	2780600	+	0	NA	intron (NM_015295, intron 44 of 47)	intron (NM_015295, intron 44 of 47)	-66506	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
184181	chr5	95820221	95820530	+	0	NA	intron (NM_001118890, intron 1 of 2)	AluJr|SINE|Alu	2351	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
53943	chr12	71839101	71840900	+	0	NA	intron (NR_027449, intron 1 of 15)	intron (NR_027449, intron 1 of 15)	241	NM_022771	64786		NM_022771	ENSG00000121749	TBC1D15	RAB7-GAP	TBC1 domain family member 15	protein-coding
4869	chr1	23765551	23765850	+	0	NA	intron (NR_038280, intron 3 of 3)	AluSz|SINE|Alu	12597	NR_038280	100506963		NR_038280	ENSG00000236810	ELOA-AS1	TCEB3-AS1	ELOA antisense RNA 1	ncRNA
55374	chr12	104298671	104299030	+	0	NA	intron (NM_001261446, intron 2 of 13)	intron (NM_001261446, intron 2 of 13)	-4889	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
168158	chr3	139343671	139344780	+	0	NA	promoter-TSS (NM_001363857)	promoter-TSS (NM_001363857)	205	NM_020191	56945		NM_020191	ENSG00000175110	MRPS22	C3orf5|COXPD5|GIBT|GK002|MRP-S22|ODG7|RPMS22|mS22	mitochondrial ribosomal protein S22	protein-coding
164676	chr3	67357871	67358030	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	132486	NR_036234	100422941		NR_036234	ENSG00000283298	MIR4272	-	microRNA 4272	ncRNA
33110	chr10	111076971	111077330	+	0	NA	5' UTR (NM_000681, exon 1 of 1)	5' UTR (NM_000681, exon 1 of 1)	121	NM_000681	150		NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|FPLD8|ZNF32	adrenoceptor alpha 2A	protein-coding
147633	chr20	62151051	62151350	+	0	NA	intron (NM_198935, intron 1 of 10)	intron (NM_198935, intron 1 of 10)	7431	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
101921	chr17	74461571	74461930	+	0	NA	Intergenic	MIRc|SINE|MIR	-4623	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
154883	chr22	37145401	37145600	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	4416	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
150314	chr21	42006051	42006950	+	0	NA	intron (NM_001320731, intron 1 of 3)	intron (NM_001320731, intron 1 of 3)	-2694	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
110394	chr19	1941801	1942300	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	878	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
218974	chr8	61707351	61707850	+	0	NA	intron (NM_032466, intron 1 of 13)	L1ME3E|LINE|L1	6992	NM_004318	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
124527	chr2	209551	209650	+	0	NA	Intergenic	L2a|LINE|L2	46740	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
167024	chr3	126357291	126358230	+	0	NA	promoter-TSS (NM_014079)	promoter-TSS (NM_014079)	-352	NM_014079	28999		NM_014079	ENSG00000163884	KLF15	KKLF	KLF transcription factor 15	protein-coding
9418	chr1	47725001	47725450	+	0	NA	Intergenic	CpG	272160	NM_001194986	388630		NM_001194986	ENSG00000269113	TRABD2B	TIKI2	TraB domain containing 2B	protein-coding
99392	chr17	49988901	49989100	+	0	NA	Intergenic	Intergenic	6224	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
105664	chr18	2595871	2596030	+	0	NA	intron (NM_006101, intron 11 of 16)	L2b|LINE|L2	24393	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
66746	chr14	64512571	64512730	+	0	NA	intron (NM_001123329, intron 1 of 1)	intron (NM_001123329, intron 1 of 1)	-7437	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
122347	chr19	49288771	49289030	+	0	NA	TTS (NM_014037)	TTS (NM_014037)	19968	NR_036209	100422979		NR_036209	ENSG00000265407	MIR4324	mir-4324	microRNA 4324	ncRNA
234068	chrX	8037701	8038200	+	0	NA	Intergenic	Intergenic	-89015	NR_030380	723779		NR_030380	ENSG00000207628	MIR651	MIRN651|hsa-mir-651|mir-651	microRNA 651	ncRNA
39291	chr11	58571771	58572250	+	0	NA	intron (NM_001143995, intron 1 of 8)	MIR3|SINE|MIR	3846	NM_004811	9404		NM_004811	ENSG00000110031	LPXN	LDPL	leupaxin	protein-coding
122223	chr19	48982101	48982700	+	0	NA	intron (NM_002103, intron 6 of 15)	intron (NM_002103, intron 6 of 15)	10909	NR_027763	2997		NM_002103	ENSG00000104812	GYS1	GSY|GYS	glycogen synthase 1	protein-coding
17449	chr1	156689121	156689980	+	0	NA	Intergenic	Intergenic	-12143	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
49679	chr12	30693701	30694550	+	0	NA	intron (NM_006390, intron 1 of 24)	intron (NM_006390, intron 1 of 24)	1744	NM_006390	10526		NM_006390	ENSG00000133704	IPO8	RANBP8|VISS	importin 8	protein-coding
202672	chr6	158787321	158787850	+	0	NA	intron (NM_003379, intron 2 of 12)	intron (NM_003379, intron 2 of 12)	-22832	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
135501	chr2	161988601	161988800	+	0	NA	Intergenic	Intergenic	85515	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
228671	chr9	107297171	107297330	+	0	NA	intron (NM_001244713, intron 1 of 9)	L1M5|LINE|L1	12481	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
98466	chr17	47114821	47115080	+	0	NA	Intergenic	AluJb|SINE|Alu	74345	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
109207	chr19	459171	460500	+	0	NA	intron (NM_012435, intron 1 of 12)	CpG	1161	NM_012435	25759		NM_012435	ENSG00000129946	SHC2	SCK|SHCB|SLI	SHC adaptor protein 2	protein-coding
227993	chr9	95502121	95502580	+	0	NA	intron (NM_001354919, intron 2 of 4)	L2b|LINE|L2	4849	NM_001083607	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
72785	chr15	39966371	39966830	+	0	NA	intron (NM_001013703, intron 8 of 38)	intron (NM_001013703, intron 8 of 38)	32485	NM_001013703	440275		NM_001013703	ENSG00000128829	EIF2AK4	GCN2|PVOD2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding
81268	chr16	4628751	4629050	+	0	NA	intron (NM_001142291, intron 1 of 15)	AluSx1|SINE|Alu	4074	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
239209	chrY	12923751	12923850	+	0	NA	Intergenic	HUERS-P2-int|LTR|ERV1	18095	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
52115	chr12	54194851	54195180	+	0	NA	Intergenic	MIRc|SINE|MIR	-6021	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
218038	chr8	38792071	38792600	+	0	NA	intron (NR_148050, intron 2 of 4)	AluJr|SINE|Alu	4229	NM_001352798	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
228358	chr9	99056451	99057500	+	0	NA	intron (NM_001855, intron 35 of 41)	L1MB7|LINE|L1	-48138	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233558	chrX	274351	275450	+	0	NA	Intergenic	Intergenic	-1456	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
116951	chr19	18855371	18855530	+	0	NA	intron (NM_001297549, intron 11 of 23)	intron (NM_001297549, intron 11 of 23)	23491	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
126904	chr2	32424451	32424750	+	0	NA	intron (NM_016252, intron 10 of 73)	AluSq|SINE|Alu	67384	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
124845	chr2	7765471	7765630	+	0	NA	Intergenic	Intergenic	134105	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
30186	chr10	74383701	74383980	+	0	NA	intron (NM_001369123, intron 4 of 9)	MER34|LTR|ERV1	145484	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
152206	chr22	20122451	20124150	+	0	NA	intron (NM_002882, intron 3 of 5)	intron (NM_002882, intron 3 of 5)	-3102	NR_145765	109617010		NR_145765	ENSG00000264346	SNORA77B	-	small nucleolar RNA, H/ACA box 77B	snoRNA
195905	chr6	41728221	41729400	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	4800	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
124370	chr19	58361921	58363160	+	0	NA	promoter-TSS (NR_136527)	promoter-TSS (NR_136527)	-86	NR_136527	105372483		NR_136527		ZNF497-AS1	-	ZNF497 antisense RNA 1	ncRNA
143878	chr20	32564671	32565700	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	20148	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
14397	chr1	144247151	144247800	+	0	NA	intron (NR_027356, intron 1 of 2).2	intron (NR_027356, intron 1 of 2).2	730	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
42153	chr11	67728871	67729230	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-47826	NM_001031615	222		NM_000695	ENSG00000132746	ALDH3B2	ALDH8	aldehyde dehydrogenase 3 family member B2	protein-coding
58354	chr12	131611151	131611650	+	0	NA	Intergenic	Intergenic	36721	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
234096	chrX	9350401	9350600	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-112795	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
167942	chr3	136193121	136193880	+	0	NA	intron (NM_018133, intron 1 of 1)	A-rich|Low_complexity|Low_complexity	968	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
96172	chr17	39720701	39721300	+	0	NA	intron (NM_001382797, intron 16 of 25)	AluJb|SINE|Alu	-5495	NR_039881	100616132		NR_039881	ENSG00000265178	MIR4728	-	microRNA 4728	ncRNA
150087	chr21	37412471	37413200	+	0	NA	intron (NM_101395, intron 2 of 12)	intron (NM_101395, intron 2 of 12)	-6070	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
126654	chr2	28972971	28973230	+	0	NA	Intergenic	L3|LINE|CR1	-8198	NM_199280	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
3125	chr1	12414671	12415130	+	0	NA	intron (NM_018156, intron 62 of 68)	intron (NM_018156, intron 62 of 68)	-92346	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
116601	chr19	18268971	18269530	+	0	NA	intron (NM_001145305, intron 2 of 3)	G-rich|Low_complexity|Low_complexity	5202	NM_001145304	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
67608	chr14	72599821	72600080	+	0	NA	Intergenic	Intergenic	83130	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
195655	chr6	37923651	37923750	+	0	NA	intron (NM_021943, intron 1 of 5)	Tigger3b|DNA|TcMar-Tigger	103973	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
59577	chr13	27445271	27445930	+	0	NA	intron (NM_001166263, intron 1 of 5)	L1MC5a|LINE|L1	4589	NM_001166262	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
24535	chr1	244846021	244846780	+	0	NA	Intergenic	AluSg|SINE|Alu	7817	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
177627	chr4	121183371	121183830	+	0	NA	intron (NM_001128843, intron 2 of 12)	MER1A|DNA|hAT-Charlie	-19279	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
45734	chr11	119113771	119114200	+	0	NA	exon (NM_001290474, exon 12 of 14)	exon (NM_001290474, exon 12 of 14)	6641	NM_014807	9854		NM_014807	ENSG00000172375	C2CD2L	DLNB23|TMEM24	C2CD2 like	protein-coding
162997	chr3	49726601	49726800	+	0	NA	3' UTR (NM_001006115, exon 5 of 5)	3' UTR (NM_001006115, exon 5 of 5)	-2726	NM_013334	29925		NM_013334	ENSG00000173540	GMPPB	LGMDR19|MDDGA14|MDDGB14|MDDGC14	GDP-mannose pyrophosphorylase B	protein-coding
116865	chr19	18639851	18640550	+	0	NA	intron (NM_001345984, intron 1 of 3)	L1ME1|LINE|L1	3172	NM_001345982	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
200480	chr6	135212521	135213280	+	0	NA	intron (NR_134961, intron 15 of 15)	intron (NR_134961, intron 15 of 15)	-26260	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
191824	chr6	14748201	14748400	+	0	NA	Intergenic	Intergenic	-462846	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
28462	chr10	49255951	49256250	+	0	NA	Intergenic	MER96|DNA|hAT-Tip100	42793	NR_108038	100506769		NR_108038		C10orf71-AS1	-	C10orf71 antisense RNA 1	ncRNA
140207	chr2	231704701	231705530	+	0	NA	Intergenic	AluSx4|SINE|Alu	-3410	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
217460	chr8	28730701	28730930	+	0	NA	intron (NM_001440, intron 3 of 6)	intron (NM_001440, intron 3 of 6)	29314	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
29851	chr10	72350721	72350980	+	0	NA	intron (NR_157570, intron 1 of 8)	intron (NR_157570, intron 1 of 8)	4069	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
84586	chr16	30649721	30651000	+	0	NA	promoter-TSS (NM_001320464)	promoter-TSS (NM_001320464)	-418	NM_001320464	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
219587	chr8	79783501	79784150	+	0	NA	intron (NR_125410, intron 3 of 3)	CpG	15683	NR_125410	101927067		NR_125410	ENSG00000272138	LINC01607	-	long intergenic non-protein coding RNA 1607	ncRNA
188386	chr5	152397671	152397830	+	0	NA	intron (NM_020167, intron 2 of 3)	MIR3|SINE|MIR	7529	NM_020167	56923		NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding
196056	chr6	42118671	42119030	+	0	NA	intron (NM_001164446, intron 2 of 4)	intron (NM_001164446, intron 2 of 4)	23770	NM_001164446	647024		NM_001164446	ENSG00000188112	C6orf132	LncCCLM|bA7K24.2	chromosome 6 open reading frame 132	protein-coding
160641	chr3	31559851	31560250	+	0	NA	intron (NM_178862, intron 1 of 15)	L1MA4A|LINE|L1	27125	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
37557	chr11	18721901	18722450	+	0	NA	intron (NR_160413, intron 2 of 20)	intron (NR_160413, intron 2 of 20)	4013	NM_173588	283284		NM_173588	ENSG00000179057	IGSF22	IGFN2	immunoglobulin superfamily member 22	protein-coding
26176	chr10	14528071	14529430	+	0	NA	intron (NM_001282695, intron 4 of 5)	intron (NM_001282695, intron 4 of 5)	3964	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
19270	chr1	172716371	172716730	+	0	NA	Intergenic	Intergenic	57447	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
197320	chr6	73180801	73181330	+	0	NA	intron (NM_001160133, intron 12 of 14)	intron (NM_001160133, intron 12 of 14)	-37551	NR_046621	100873997		NR_046621	ENSG00000229154	KCNQ5-AS1	-	KCNQ5 antisense RNA 1	ncRNA
94103	chr17	27805351	27806380	+	0	NA	Intergenic	Intergenic	-5336	NM_000625	4843		NM_000625	ENSG00000007171	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2	protein-coding
61417	chr13	51807801	51808480	+	0	NA	Intergenic	L2a|LINE|L2	-3977	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
56825	chr12	120224471	120225230	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	23559	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
129550	chr2	69824871	69825030	+	0	NA	intron (NM_001320698, intron 14 of 14)	AluY|SINE|Alu	-4710	NM_178439	64395		NM_178439	ENSG00000087338	GMCL1	BTBD13|GCL|GCL1|SPATA29	germ cell-less 1, spermatogenesis associated	protein-coding
95780	chr17	38699451	38699950	+	0	NA	Intergenic	Intergenic	-1444	NR_158157	105371763		NR_158157		LOC105371763	-	uncharacterized LOC105371763	ncRNA
209004	chr7	74272651	74272900	+	0	NA	Intergenic	Intergenic	-16632	NM_032421	7461		NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding
126753	chr2	30236821	30237080	+	0	NA	intron (NM_030915, intron 2 of 2)	intron (NM_030915, intron 2 of 2)	5416	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
6199	chr1	27457271	27457430	+	0	NA	intron (NM_006990, intron 1 of 8)	AluJb|SINE|Alu	32817	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
171171	chr3	195642201	195642400	+	0	NA	Intergenic	Intergenic	9859	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
65350	chr14	50342721	50343300	+	0	NA	intron (NM_001282236, intron 4 of 8)	intron (NM_001282236, intron 4 of 8)	30686	NM_015684	27109		NM_015684	ENSG00000125375	DMAC2L	ATP5S|ATPW|FB|HSU79253	distal membrane arm assembly component 2 like	protein-coding
217791	chr8	33524751	33525200	+	0	NA	Intergenic	Intergenic	11500	NR_003041	692084		NR_003041	ENSG00000239039	SNORD13	RNU13|SNORD13A|U13	small nucleolar RNA, C/D box 13	snoRNA
209331	chr7	76201351	76202200	+	0	NA	promoter-TSS (NM_001110199)	promoter-TSS (NM_001110199)	-121	NM_001291831	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
142086	chr20	2470101	2471880	+	0	NA	promoter-TSS (NM_198216)	promoter-TSS (NM_198216)	-201	NM_198216	6628		NM_003091	ENSG00000125835	SNRPB	CCMS|COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B	small nuclear ribonucleoprotein polypeptides B and B1	protein-coding
31023	chr10	88827901	88828300	+	0	NA	intron (NM_144590, intron 3 of 5)	intron (NM_144590, intron 3 of 5)	23744	NM_144590	118932		NM_144590	ENSG00000152766	ANKRD22	-	ankyrin repeat domain 22	protein-coding
179429	chr4	184314071	184314450	+	0	NA	Intergenic	Intergenic	39717	NR_040108	728175		NR_040108	ENSG00000180712	LINC02363	-	long intergenic non-protein coding RNA 2363	ncRNA
181316	chr5	40355371	40355530	+	0	NA	Intergenic	MER52A|LTR|ERV1	303159	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
82896	chr16	21621401	21622150	+	0	NA	intron (NM_016025, intron 3 of 4).2	intron (NM_016025, intron 3 of 4).2	22198	NM_016025	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
29158	chr10	68720521	68722430	+	0	NA	intron (NM_001282959, intron 1 of 23)	CpG	236	NR_104262	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
127143	chr2	37682571	37683030	+	0	NA	Intergenic	Intergenic	-9851	NM_001371569	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
18702	chr1	167439251	167439980	+	0	NA	intron (NM_198053, intron 2 of 7)	CpG-1944	78914	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
194740	chr6	33860451	33861650	+	0	NA	Intergenic	LTR67B|LTR|ERVL	35857	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
175960	chr4	81214921	81215630	+	0	NA	promoter-TSS (NM_001363401)	promoter-TSS (NM_001363401)	-53	NM_001282485	5593		NM_006259	ENSG00000138669	PRKG2	AMD4|PKG2|PRKGR2|SMDP|cGK2|cGKII	protein kinase cGMP-dependent 2	protein-coding
137940	chr2	201121101	201121650	+	0	NA	intron (NR_147255, intron 1 of 4)	intron (NR_147255, intron 1 of 4)	2659	NM_001127183	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
23205	chr1	227544151	227544250	+	0	NA	Intergenic	Intergenic	-19356	NM_001367909	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
182185	chr5	56738201	56738400	+	0	NA	Intergenic	MIRc|SINE|MIR	34571	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
234404	chrX	16725571	16725730	+	0	NA	intron (NR_033181, intron 1 of 8)	intron (NR_033181, intron 1 of 8)	6038	NR_033181	94056		NM_032796	ENSG00000169895	SYAP1	BSTA|PRO3113	synapse associated protein 1	protein-coding
173191	chr4	6778951	6779480	+	0	NA	Intergenic	Intergenic	-3512	NM_014743	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
24114	chr1	235645121	235645380	+	0	NA	intron (NM_001098721, intron 1 of 3)	intron (NM_001098721, intron 1 of 3)	4534	NM_001098722	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
158701	chr3	7205651	7206030	+	0	NA	intron (NM_000844, intron 2 of 9)	intron (NM_000844, intron 2 of 9)	-311823	NR_131906	105376946		NR_131906	ENSG00000237665	GRM7-AS2	-	GRM7 antisense RNA 2	ncRNA
93653	chr17	19189901	19190830	+	0	NA	promoter-TSS (NR_006881)	promoter-TSS (NR_006881)	-120	NR_006881	780853		NR_006881		SNORD3C	RNU3-3|U3-3	small nucleolar RNA, C/D box 3C	snoRNA
148700	chr21	6374971	6375130	+	0	NA	Intergenic	Intergenic	85032	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
139839	chr2	230438501	230438900	+	0	NA	intron (NM_001080391, intron 2 of 28)	L1PB1|LINE|L1	21944	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
209837	chr7	89422271	89422430	+	0	NA	Intergenic	AluJb|SINE|Alu	-626613	NM_152706	219557		NM_152706	ENSG00000164645	TEX47	C7orf62|DYBLUF	testis expressed 47	protein-coding
156372	chr22	41089201	41089830	+	0	NA	Intergenic	AluYk2|SINE|Alu	-2998	NR_031694	100302237		NR_031694	ENSG00000284015	MIR1281	MIRN1281|hsa-mir-1281	microRNA 1281	ncRNA
236706	chrX	77892801	77893200	+	0	NA	intron (NM_032121, intron 1 of 9)	L2c|LINE|L2	2435	NM_001367916	84061		NM_032121	ENSG00000102158	MAGT1	CDG1CC|IAP|MRX95|OST3B|PRO0756|SLC58A1|XMEN|bA217H1.1	magnesium transporter 1	protein-coding
99022	chr17	48838871	48840080	+	0	NA	intron (NM_001261395, intron 1 of 11)	AluSx1|SINE|Alu	8440	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
212591	chr7	129043151	129043250	+	0	NA	intron (NR_167926, intron 1 of 21)	AluJr|SINE|Alu	11911	NM_001382222	23534		NM_012470	ENSG00000064419	TNPO3	IPO12|LGMD1F|LGMDD2|MTR10A|TRN-SR|TRN-SR2|TRNSR	transportin 3	protein-coding
45472	chr11	118574751	118575380	+	0	NA	intron (NM_001142281, intron 1 of 8)	AluSc8|SINE|Alu	2656	NM_001655	372		NM_001655	ENSG00000095139	ARCN1	COPD|SRMMD|SSMG	archain 1	protein-coding
102090	chr17	74970551	74971100	+	0	NA	intron (NR_110878, intron 1 of 2)	intron (NR_110878, intron 1 of 2)	136	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
52534	chr12	56119301	56120050	+	0	NA	intron (NM_032786, intron 2 of 2)	intron (NM_032786, intron 2 of 2)	1258	NM_001303125	84872		NM_032786	ENSG00000135482	ZC3H10	ZC3HDC10	zinc finger CCCH-type containing 10	protein-coding
164649	chr3	66494771	66495530	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	4904	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
5048	chr1	24541151	24541530	+	0	NA	TTS (NM_001251977)	TTS (NM_001251977)	14684	NR_109781	100506985		NR_109781		NCMAP-DT	-	NCMAP divergent transcript	ncRNA
19750	chr1	181397701	181398500	+	0	NA	Intergenic	Intergenic	-85417	NM_001205293	777		NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|DEE69|EIEE69|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
169981	chr3	179464301	179464500	+	0	NA	Intergenic	Intergenic	-12930	NM_021629	59345		NM_021629	ENSG00000114450	GNB4	CMTD1F|HG2B	G protein subunit beta 4	protein-coding
17813	chr1	159851971	159852130	+	0	NA	intron (NR_147123, intron 1 of 3)	intron (NR_147123, intron 1 of 3)	2987	NR_147124	284677		NM_001134233	ENSG00000188004	SNHG28	C1orf204|VSIG8-OT1	small nucleolar RNA host gene 28	ncRNA
181537	chr5	43071171	43071330	+	0	NA	intron (NR_102752, intron 2 of 2)	LTR28C|LTR|ERV1	-3811	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
212417	chr7	128208551	128209080	+	0	NA	TTS (NR_029596)	TTS (NR_029596)	943	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
189018	chr5	168683651	168683950	+	0	NA	intron (NM_003062, intron 32 of 35)	intron (NM_003062, intron 32 of 35)	-23127	NR_130737	101927969		NR_130737		SLIT3-AS2	-	SLIT3 antisense RNA 2	ncRNA
80629	chr16	2984801	2985000	+	0	NA	Intergenic	AluJb|SINE|Alu	-4154	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
46697	chr11	128775471	128775630	+	0	NA	intron (NM_001167681, intron 5 of 9)	intron (NM_001167681, intron 5 of 9)	66919	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
10674	chr1	71060401	71060800	+	0	NA	intron (NR_038420, intron 2 of 2)	MER2B|DNA|TcMar-Tigger	7116	NR_029707	406962		NR_029707	ENSG00000207721	MIR186	MIRN186|miR-186	microRNA 186	ncRNA
18348	chr1	161216421	161216680	+	0	NA	intron (NM_004106, intron 1 of 4)	intron (NM_004106, intron 1 of 4)	1255	NM_004106	2207		NM_004106	ENSG00000158869	FCER1G	FCRG	Fc epsilon receptor Ig	protein-coding
209496	chr7	76735521	76736050	+	0	NA	Intergenic	Intergenic	-108482	NM_152992	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
183728	chr5	81029351	81029650	+	0	NA	intron (NM_006909, intron 1 of 26)	L1PA5|LINE|L1	-68593	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
10715	chr1	75784051	75785300	+	0	NA	Intergenic	Intergenic	-1519	NR_073562	5876		NM_004582	ENSG00000137955	RABGGTB	GGTB	Rab geranylgeranyltransferase subunit beta	protein-coding
135386	chr2	160488151	160488450	+	0	NA	intron (NM_016836, intron 1 of 13)	AluSg|SINE|Alu	5507	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
40316	chr11	63892771	63892930	+	0	NA	intron (NM_017490, intron 1 of 17)	AluJr|SINE|Alu	4313	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
29026	chr10	63866451	63866950	+	0	NA	Intergenic	Intergenic	-344810	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
195532	chr6	37314821	37315100	+	0	NA	intron (NM_017772, intron 10 of 12)	intron (NM_017772, intron 10 of 12)	-39023	NM_183078	9025		NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
237190	chrX	107741551	107742830	+	0	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	-25128	NM_004089	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
3177	chr1	13698651	13699050	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1338	NM_001135610	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
190478	chr5	180291251	180293100	+	0	NA	promoter-TSS (NM_139069)	promoter-TSS (NM_139069)	-92	NM_001135044	5601		NM_002752	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
215819	chr8	6408501	6408700	+	0	NA	intron (NM_001322045, intron 1 of 7)	AluJb|SINE|Alu	1447	NM_001322045	79648		NM_024596	ENSG00000147316	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
14199	chr1	125178771	125179480	+	0	NA	Intergenic	Intergenic	3660013	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
174224	chr4	37793601	37793830	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-32971	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
137696	chr2	197490521	197490780	+	0	NA	intron (NM_199440, intron 7 of 11)	AluSg4|SINE|Alu	-3747	NR_132788	106635540		NR_132788		SNORA105B	-	small nucleolar RNA, H/ACA box 105B	snoRNA
141898	chr20	846701	848050	+	0	NA	Intergenic	Intergenic	2732	NM_031424	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
56599	chr12	118056771	118057350	+	0	NA	intron (NM_001278557, intron 1 of 8)	intron (NM_001278557, intron 1 of 8)	4119	NM_018639	55884		NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding
158639	chr3	4988471	4988630	+	0	NA	Intergenic	AluJb|SINE|Alu	-8589	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
143907	chr20	32588521	32588800	+	0	NA	intron (NR_034152, intron 1 of 2)	AluJb|SINE|Alu	1181	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
118926	chr19	38739701	38740930	+	0	NA	intron (NM_144691, intron 4 of 20)	intron (NM_144691, intron 4 of 20)	4159	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
64645	chr14	31355721	31356310	+	0	NA	intron (NM_015473, intron 16 of 35)	intron (NM_015473, intron 16 of 35)	64535	NM_015473	25938		NM_015473	ENSG00000129493	HEATR5A	C14orf125|p200b	HEAT repeat containing 5A	protein-coding
88531	chr16	85411701	85412100	+	0	NA	Intergenic	Intergenic	-105575	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
119236	chr19	39473701	39474830	+	0	NA	exon (NM_001319991, exon 26 of 29)	exon (NM_001319991, exon 26 of 29)	6043	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
10927	chr1	84141071	84141550	+	0	NA	intron (NM_207578, intron 1 of 8)	intron (NM_207578, intron 1 of 8)	-2961	NM_182948	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
92854	chr17	16304651	16304950	+	0	NA	intron (NM_004278, intron 3 of 6)	L2a|LINE|L2	22786	NR_031698	100302124		NR_031698	ENSG00000221355	MIR1288	MIRN1288|hsa-mir-1288	microRNA 1288	ncRNA
93334	chr17	18198851	18199150	+	0	NA	intron (NM_017758, intron 2 of 3)	intron (NM_017758, intron 2 of 3)	15172	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
90741	chr17	2029701	2031500	+	0	NA	intron (NR_144474, intron 1 of 12)	L2b|LINE|L2	447	NM_001383	1801		NM_001383	ENSG00000108963	DPH1	DEDSSH|DPH2L|DPH2L1|OVCA1	diphthamide biosynthesis 1	protein-coding
57982	chr12	124036521	124036880	+	0	NA	intron (NM_001347902, intron 2 of 4)	intron (NM_001347902, intron 2 of 4)	63485	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
94078	chr17	27529371	27529530	+	0	NA	intron (NM_014238, intron 2 of 20)	L1ME4a|LINE|L1	57486	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
209468	chr7	76512451	76512750	+	0	NA	intron (NM_030570, intron 2 of 4)	intron (NM_030570, intron 2 of 4)	2048	NM_001347684	105375355		NM_030570	ENSG00000243566	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
143657	chr20	31879471	31880530	+	0	NA	intron (NR_160277, intron 1 of 12)	CpG	183	NR_160277	164395		NM_001008409	ENSG00000131044	TTLL9	C20orf125	tubulin tyrosine ligase like 9	protein-coding
187206	chr5	140672401	140673380	+	0	NA	exon (NM_194249, exon 3 of 4)	exon (NM_194249, exon 3 of 4)	686	NM_194249	373863		NM_194249	ENSG00000256453	DND1	RBMS4	DND microRNA-mediated repression inhibitor 1	protein-coding
137668	chr2	197452121	197452380	+	0	NA	Intergenic	AluYe5|SINE|Alu	-1173	NM_025147	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
141866	chr20	660571	660730	+	0	NA	TTS (NM_033129)	TTS (NM_033129)	-7450	NM_080725	140809		NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
175648	chr4	76545401	76545600	+	0	NA	intron (NM_020859, intron 1 of 10)	intron (NM_020859, intron 1 of 10)	-28068	NR_039654	100616299		NR_039654	ENSG00000263445	MIR4450	mir-4450	microRNA 4450	ncRNA
22163	chr1	212231371	212231950	+	0	NA	intron (NR_125984, intron 2 of 3)	intron (NR_125984, intron 2 of 3)	3076	NR_125983	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
33451	chr10	119041271	119041950	+	0	NA	intron (NM_003750, intron 19 of 21)	intron (NM_003750, intron 19 of 21)	11896	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
69248	chr14	92911401	92911600	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-4018	NR_135253	101929002		NR_135253	ENSG00000258499	LINC02287	-	long intergenic non-protein coding RNA 2287	ncRNA
50403	chr12	47334321	47334850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-27186	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
153528	chr22	26566801	26567200	+	0	NA	intron (NM_001362923, intron 1 of 7)	MER20|DNA|hAT-Charlie	-1659	NM_001008566	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
31393	chr10	95230771	95231230	+	0	NA	Intergenic	Intergenic	36800	NM_207321	142827		NM_207321	ENSG00000173124	ACSM6	C10orf129|bA310E22.3	acyl-CoA synthetase medium chain family member 6	protein-coding
122841	chr19	50436001	50436200	+	0	NA	exon (NM_004533, exon 4 of 28)	exon (NM_004533, exon 4 of 28)	3208	NM_004533	4606		NM_004533	ENSG00000086967	MYBPC2	MYBPC|MYBPCF|fsMyBP-C	myosin binding protein C2	protein-coding
108842	chr18	79157001	79157680	+	0	NA	intron (NM_198531, intron 7 of 29)	AluSz|SINE|Alu	87946	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
43380	chr11	77047081	77048650	+	0	NA	Intergenic	MER41B|LTR|ERV1	13467	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
48452	chr12	9738751	9740100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6126	NM_001253750	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
235216	chrX	41364001	41364580	+	0	NA	non-coding (NR_126093, exon 19 of 19)	non-coding (NR_126093, exon 19 of 19)	30124	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
172456	chr4	1986601	1986800	+	0	NA	promoter-TSS (NR_030641)	promoter-TSS (NR_030641)	-223	NR_030641	100126332		NR_030641	ENSG00000284587	MIR943	MIRN943|hsa-mir-943	microRNA 943	ncRNA
30208	chr10	74834001	74834200	+	0	NA	intron (NM_001370142, intron 1 of 16)	intron (NM_001370142, intron 1 of 16)	7500	NM_001370137	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
74729	chr15	63193901	63194650	+	0	NA	intron (NM_016530, intron 1 of 7)	MIR3|SINE|MIR	4669	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
60137	chr13	39655371	39656730	+	0	NA	intron (NM_001145079, intron 1 of 18)	intron (NM_001145079, intron 1 of 18)	388	NM_020751	57511		NM_020751	ENSG00000133103	COG6	CDG2L|COD2|SHNS	component of oligomeric golgi complex 6	protein-coding
198021	chr6	90130451	90130750	+	0	NA	intron (NM_021813, intron 4 of 8)	MIR|SINE|MIR	166243	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
139765	chr2	230067001	230067430	+	0	NA	intron (NM_152527, intron 1 of 4)	intron (NM_152527, intron 1 of 4)	1709	NM_152527	151473		NM_152527	ENSG00000163053	SLC16A14	MCT14	solute carrier family 16 member 14	protein-coding
142534	chr20	5056451	5057750	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-46787	NM_203327	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
57791	chr12	123074801	123076400	+	0	NA	intron (NM_001300801, intron 2 of 25)	intron (NM_001300801, intron 2 of 25)	-5784	NR_038290	100507091		NR_038290	ENSG00000251497	PITPNM2-AS1	-	PITPNM2 antisense RNA 1	ncRNA
14027	chr1	120737271	120737630	+	0	NA	intron (NR_157049, intron 1 of 4)	MIR3|SINE|MIR	13511	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
180189	chr5	1486971	1487330	+	0	NA	intron (NM_024830, intron 5 of 13)	intron (NM_024830, intron 5 of 13)	23706	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
151737	chr22	17775901	17776600	+	0	NA	Intergenic	Intergenic	-1040	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
44804	chr11	113806471	113806630	+	0	NA	exon (NM_001346268, exon 15 of 21)	exon (NM_001346268, exon 15 of 21)	26754	NM_001101389	644672		NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding
49861	chr12	35842151	35842250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1819704	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
90978	chr17	2702021	2702680	+	0	NA	intron (NM_015229, intron 3 of 25)	intron (NM_015229, intron 3 of 25)	9414	NM_001366661	23277		NM_015229	ENSG00000132361	CLUH	CLU1	clustered mitochondria homolog	protein-coding
98280	chr17	46214421	46214680	+	0	NA	intron (NM_001193465, intron 2 of 15)	AluSq2|SINE|Alu	10817	NM_001193465	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
210718	chr7	100603651	100606350	+	0	NA	promoter-TSS (NR_038910)	promoter-TSS (NR_038910)	-962	NR_038910	100129845		NR_038910	ENSG00000224729	PCOLCE-AS1	-	PCOLCE antisense RNA 1	ncRNA
91563	chr17	5097121	5097880	+	0	NA	Intergenic	CpG	-14435	NR_135658	101928000		NR_135657	ENSG00000234327	ZNF232-AS1	-	ZNF232 antisense RNA 1	ncRNA
188501	chr5	154856151	154856680	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1834	NM_001301083	9337		NM_004779	ENSG00000155508	CNOT8	CAF1|CALIF|Caf1b|POP2|hCAF1	CCR4-NOT transcription complex subunit 8	protein-coding
49168	chr12	14993671	14994150	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	-7923	NR_120466	101928340		NR_120466		LINC01489	-	long intergenic non-protein coding RNA 1489	ncRNA
48234	chr12	8237251	8238280	+	0	NA	intron (NR_120454, intron 1 of 2)	intron (NR_120454, intron 1 of 2)	2350	NR_120454	101927905		NR_120454	ENSG00000215241	LINC02449	-	long intergenic non-protein coding RNA 2449	ncRNA
49400	chr12	22535401	22535900	+	0	NA	intron (NR_169598, intron 2 of 24)	L1ME4b|LINE|L1	8547	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
234172	chrX	11762471	11762630	+	0	NA	intron (NM_078628, intron 6 of 8)	MER5B|DNA|hAT-Charlie	2903	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
192777	chr6	26530921	26531550	+	0	NA	Intergenic	Intergenic	-7131	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
204391	chr7	3035371	3035530	+	0	NA	intron (NM_001324281, intron 1 of 25)	AluY|SINE|Alu	8417	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
192621	chr6	26089951	26090250	+	0	NA	intron (NR_144383, intron 1 of 1)	L2a|LINE|L2	934	NR_144383	108783645		NR_144383		HFE-AS1	-	HFE antisense RNA 1	ncRNA
157137	chr22	42820251	42820700	+	0	NA	intron (NM_001142293, intron 8 of 14)	intron (NM_001142293, intron 8 of 14)	36798	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
30868	chr10	86710921	86712280	+	0	NA	intron (NM_001171610, intron 9 of 13)	CpG	43036	NM_001080116	11155		NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
205830	chr7	24822651	24823200	+	0	NA	intron (NM_015550, intron 16 of 22)	intron (NM_015550, intron 16 of 22)	-64986	NM_004403	1687		NM_004403	ENSG00000105928	GSDME	DFNA5|ICERE-1	gasdermin E	protein-coding
85936	chr16	57134891	57136130	+	0	NA	intron (NM_152727, intron 13 of 15)	AluJo|SINE|Alu	42927	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
168523	chr3	143969471	143969830	+	0	NA	Intergenic	AluSc|SINE|Alu	-2148	NM_001363944	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
49201	chr12	15875951	15876380	+	0	NA	Intergenic	L1PBa1|LINE|L1	-6222	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
78528	chr15	92949521	92950100	+	0	NA	TTS (NM_001042572)	TTS (NM_001042572)	45411	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
63990	chr14	22319771	22320030	+	0	NA	Intergenic	AluJr4|SINE|Alu	112853	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
44264	chr11	102111851	102112200	+	0	NA	promoter-TSS (NM_001195045)	promoter-TSS (NM_001195045)	-423	NM_001195045	10413		NM_006106	ENSG00000137693	YAP1	COB1|YAP|YAP-1|YAP2|YAP65|YKI	Yes1 associated transcriptional regulator	protein-coding
155096	chr22	37578971	37579330	+	0	NA	intron (NM_006498, intron 1 of 3)	AluSx|SINE|Alu	937	NM_006498	3957		NM_006498	ENSG00000100079	LGALS2	HL14	galectin 2	protein-coding
115016	chr19	14076571	14076730	+	0	NA	Intergenic	AluY|SINE|Alu	3289	NR_106715	102466515		NR_106715	ENSG00000284081	MIR1199	hsa-mir-1199	microRNA 1199	ncRNA
208168	chr7	64669001	64669280	+	0	NA	non-coding (NR_104148, exon 2 of 4)	non-coding (NR_104148, exon 2 of 4)	3007	NM_001013746	51427		NM_016220	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
30161	chr10	74184171	74184630	+	0	NA	intron (NM_001369124, intron 1 of 9)	AluJr|SINE|Alu	7637	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
132430	chr2	105832551	105832850	+	0	NA	intron (NM_001004722, intron 2 of 3)	L1MA5|LINE|L1	-19147	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
8085	chr1	39033301	39033700	+	0	NA	intron (NM_004552, intron 2 of 2)	AluY|SINE|Alu	7150	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
98481	chr17	47205401	47206150	+	0	NA	Intergenic	Intergenic	-3287	NM_001002841	4635		NM_002476	ENSG00000198336	MYL4	ALC1|AMLC|GT1|PRO1957	myosin light chain 4	protein-coding
84292	chr16	30083101	30083600	+	0	NA	intron (NM_001303506, intron 5 of 8)	intron (NM_001303506, intron 5 of 8)	7356	NM_001303507	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
223452	chr8	143984401	143985100	+	0	NA	exon (NM_032789, exon 5 of 11)	exon (NM_032789, exon 5 of 11)	1710	NM_032789	84875		NM_032789	ENSG00000178685	PARP10	ARTD10	poly(ADP-ribose) polymerase family member 10	protein-coding
63965	chr14	22147801	22148030	+	0	NA	Intergenic	Intergenic	284838	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
179967	chr5	845201	845750	+	0	NA	intron (NM_024786, intron 3 of 12)	intron (NM_024786, intron 3 of 12)	5511	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
50136	chr12	45718421	45718680	+	0	NA	Intergenic	Intergenic	9371	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
3860	chr1	16959801	16960000	+	0	NA	intron (NM_014675, intron 26 of 36)	LTR53|LTR|ERVL	20720	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
130891	chr2	87427351	87427950	+	0	NA	Intergenic	(AGCCAAGCC)n|Simple_repeat|Simple_repeat	-27777	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
182269	chr5	57204101	57204480	+	0	NA	intron (NM_001331037, intron 2 of 12)	AluJb|SINE|Alu	-9784	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
170326	chr3	184366021	184366280	+	0	NA	intron (NM_001278714, intron 3 of 3)	MIRb|SINE|MIR	2789	NM_001278698	5437		NM_006232	ENSG00000163882	POLR2H	RPABC3|RPB17|RPB8	RNA polymerase II, I and III subunit H	protein-coding
64144	chr14	22882621	22883500	+	0	NA	promoter-TSS (NM_173527)	promoter-TSS (NM_173527)	-162	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
33250	chr10	114477271	114477630	+	0	NA	intron (NM_001322883, intron 8 of 20)	intron (NM_001322883, intron 8 of 20)	49463	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
77972	chr15	89399451	89400780	+	0	NA	promoter-TSS (NR_160724)	promoter-TSS (NR_160724)	-56	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
152039	chr22	19490671	19490830	+	0	NA	intron (NR_161281, intron 5 of 16)	L1MD1|LINE|L1	10830	NR_161281	8318		NM_003504	ENSG00000093009	CDC45	CDC45L|CDC45L2|MGORS7|PORC-PI-1	cell division cycle 45	protein-coding
183357	chr5	77076921	77077780	+	0	NA	exon (NM_001329564, exon 2 of 2)	exon (NM_001329564, exon 2 of 2)	3221	NR_003014	677828		NR_003014	ENSG00000238961	SNORA47	HBI-115	small nucleolar RNA, H/ACA box 47	snoRNA
239036	chrY	7040601	7041350	+	0	NA	intron (NM_134258, intron 5 of 17)	intron (NM_134258, intron 5 of 17)	130278	NM_033284	90665		NM_033284	ENSG00000092377	TBL1Y	DFNY2|TBL1	transducin beta like 1 Y-linked	protein-coding
143582	chr20	31675701	31677350	+	0	NA	intron (NR_134257, intron 1 of 2)	intron (NR_134257, intron 1 of 2)	38613	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
195911	chr6	41735201	41736280	+	0	NA	promoter-TSS (NM_007162)	promoter-TSS (NM_007162)	-132	NM_001271944	7942		NM_007162	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding
11672	chr1	91822701	91823100	+	0	NA	intron (NR_036634, intron 2 of 17)	AluJb|SINE|Alu	63251	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
77301	chr15	82348671	82348830	+	0	NA	intron (NM_001164465, intron 1 of 8)	intron (NM_001164465, intron 1 of 8)	725	NM_001164465	647042		NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family like 10	protein-coding
116488	chr19	18115101	18116330	+	0	NA	intron (NM_015016, intron 2 of 26)	L2a|LINE|L2	-16899	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
48555	chr12	10237121	10237380	+	0	NA	Intergenic	LTR28B|LTR|ERV1	-1711	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
191079	chr6	3623321	3623980	+	0	NA	Intergenic	L1MB3|LINE|L1	128063	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
84561	chr16	30604451	30605030	+	0	NA	non-coding (NR_104166, exon 3 of 3)	non-coding (NR_104166, exon 3 of 3)	5088	NR_104166	115509		NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding
176913	chr4	102808351	102808650	+	0	NA	intron (NM_003340, intron 4 of 7)	intron (NM_003340, intron 4 of 7)	17360	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
220220	chr8	96262201	96263950	+	0	NA	intron (NM_014754, intron 1 of 12)	intron (NM_014754, intron 1 of 12)	1173	NM_014754	9791		NM_014754	ENSG00000156471	PTDSS1	LMHD|PSS1|PSSA	phosphatidylserine synthase 1	protein-coding
89504	chr16	89157701	89158450	+	0	NA	Intergenic	Intergenic	-1145	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
58513	chr12	132181401	132181850	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	8070	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
156695	chr22	41675701	41675900	+	0	NA	intron (NM_001003796, intron 2 of 2)	AluSx3|SINE|Alu	13067	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
116615	chr19	18286051	18286330	+	0	NA	Intergenic	Intergenic	4113	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
176282	chr4	87101521	87102200	+	0	NA	intron (NM_001313959, intron 7 of 19)	intron (NM_001313959, intron 7 of 19)	94859	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
88040	chr16	81433671	81433830	+	0	NA	Intergenic	AluY|SINE|Alu	-11420	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
25985	chr10	11871371	11871730	+	0	NA	3' UTR (NM_153256, exon 4 of 4)	3' UTR (NM_153256, exon 4 of 4)	23160	NR_038222	219731		NR_038222	ENSG00000225778	PROSER2-AS1	-	PROSER2 antisense RNA 1	ncRNA
17943	chr1	160340371	160341000	+	0	NA	intron (NM_001098398, intron 1 of 32)	L1MEc|LINE|L1	2565	NM_001098398	1314		NM_004371	ENSG00000122218	COPA	AILJK|HEP-COP|alpha-COP	COPI coat complex subunit alpha	protein-coding
52255	chr12	54420771	54421700	+	0	NA	intron (NR_120488, intron 1 of 2)	intron (NR_120488, intron 1 of 2)	1450	NR_120488	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
141962	chr20	1309571	1309730	+	0	NA	TTS (NM_015685)	TTS (NM_015685)	4023	NM_015685	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
180265	chr5	1781351	1781680	+	0	NA	Intergenic	Intergenic	18322	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
150035	chr21	37363971	37364600	+	0	NA	Intergenic	Intergenic	-1288	NM_001396	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
231461	chr9	131282521	131283400	+	0	NA	Intergenic	CpG	-6450	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
10175	chr1	61254871	61255430	+	0	NA	intron (NM_001145512, intron 3 of 11)	intron (NM_001145512, intron 3 of 11)	-1632	NR_104180	645030		NR_104180	ENSG00000237853	NFIA-AS1	-	NFIA antisense RNA 1	ncRNA
152333	chr22	20420721	20421700	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	16615	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
71643	chr14	106771651	106771750	+	0	NA	Intergenic	Intergenic	79299	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
5874	chr1	26774601	26775200	+	0	NA	exon (NM_006015, exon 18 of 20)	exon (NM_006015, exon 18 of 20)	-12154	NM_001374478	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
225473	chr9	35608201	35608400	+	0	NA	TTS (NR_039813)	TTS (NR_039813)	206	NR_039813	100616214		NR_039813	ENSG00000263892	MIR4667	mir-4667	microRNA 4667	ncRNA
47010	chr12	286771	286930	+	0	NA	intron (NM_001042603, intron 27 of 27)	intron (NM_001042603, intron 27 of 27)	-23977	NM_001190997	6540		NM_016615	ENSG00000010379	SLC6A13	GAT-2|GAT2|GAT3	solute carrier family 6 member 13	protein-coding
85307	chr16	49462351	49462650	+	0	NA	Intergenic	Intergenic	56085	NR_144553	1596		NR_144553	ENSG00000260089	ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
65885	chr14	55130871	55131250	+	0	NA	intron (NM_002306, intron 1 of 5)	intron (NM_002306, intron 1 of 5)	1808	NM_002306	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
224075	chr9	4238301	4238700	+	0	NA	intron (NM_001042413, intron 2 of 10)	intron (NM_001042413, intron 2 of 10)	61568	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
108946	chr18	79503601	79503800	+	0	NA	intron (NM_172387, intron 9 of 9)	Tigger1|DNA|TcMar-Tigger	-75582	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
118822	chr19	38559221	38560600	+	0	NA	intron (NM_000540, intron 89 of 105)	MER112|DNA|hAT-Charlie	-36437	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
214407	chr7	149814151	149814730	+	0	NA	intron (NR_163594, intron 68 of 102)	intron (NR_163594, intron 68 of 102)	-23935	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
199348	chr6	115001651	115002260	+	0	NA	Intergenic	Intergenic	641880	NR_134602	105377962		NR_134602	ENSG00000228777	LINC02534	-	long intergenic non-protein coding RNA 2534	ncRNA
42213	chr11	68032101	68032300	+	0	NA	promoter-TSS (NR_106963)	promoter-TSS (NR_106963)	-664	NR_106963	102465669		NR_106963	ENSG00000284293	MIR7113	hsa-mir-7113	microRNA 7113	ncRNA
231790	chr9	132349351	132349450	+	0	NA	exon (NM_015046, exon 3 of 26)	exon (NM_015046, exon 3 of 26)	5456	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
45575	chr11	118869901	118871050	+	0	NA	Intergenic	Intergenic	-13417	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
53449	chr12	65208751	65209200	+	0	NA	intron (NM_001167614, intron 1 of 12)	intron (NM_001167614, intron 1 of 12)	39392	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
38683	chr11	46557671	46558300	+	0	NA	intron (NM_001367471, intron 1 of 18)	intron (NM_001367471, intron 1 of 18)	29459	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
148263	chr20	63678951	63679800	+	0	NA	intron (NM_032957, intron 12 of 34)	intron (NM_032957, intron 12 of 34)	-17277	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
191373	chr6	7324671	7324830	+	0	NA	Intergenic	Intergenic	-11551	NM_001292008	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
399	chr1	1057001	1057480	+	0	NA	Intergenic	AluJo|SINE|Alu	-2494	NR_148960	100288175		NR_148960	ENSG00000291156	LOC100288175	-	uncharacterized LOC100288175	ncRNA
135515	chr2	162055401	162056200	+	0	NA	intron (NR_166824, intron 2 of 25)	intron (NR_166824, intron 2 of 25)	18415	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
3111	chr1	12265971	12266350	+	0	NA	intron (NM_018156, intron 13 of 68)	AluJr4|SINE|Alu	36130	NM_018156	55187		NM_015378	ENSG00000048707	VPS13D	BLTP5D|SCA24|SCAR4|SCASI	vacuolar protein sorting 13 homolog D	protein-coding
11225	chr1	88879301	88879930	+	0	NA	intron (NM_001514, intron 2 of 6)	intron (NM_001514, intron 2 of 6)	11952	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
24774	chr1	248856171	248856600	+	0	NA	exon (NM_001350072, exon 6 of 12)	exon (NM_001350072, exon 6 of 12)	2700	NM_001350073	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
233123	chr9	137141651	137141950	+	0	NA	intron (NM_007327, intron 1 of 19)	intron (NM_007327, intron 1 of 19)	2646	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
97887	chr17	45105101	45105500	+	0	NA	intron (NM_021079, intron 11 of 11)	intron (NM_021079, intron 11 of 11)	9133	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
155068	chr22	37541071	37541230	+	0	NA	Intergenic	MIR|SINE|MIR	-19330	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
102483	chr17	75740501	75740980	+	0	NA	intron (NM_001005619, intron 20 of 38)	intron (NM_001005619, intron 20 of 38)	16044	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
213171	chr7	132430851	132432130	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	144980	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
105814	chr18	2958851	2959380	+	0	NA	intron (NM_001375809, intron 2 of 19)	intron (NM_001375809, intron 2 of 19)	-12492	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
24615	chr1	246515351	246515450	+	0	NA	TTS (NR_040002)	TTS (NR_040002)	-8121	NM_001167740	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
23865	chr1	234793331	234793450	+	0	NA	Intergenic	Intergenic	-33334	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
185238	chr5	123419871	123420850	+	0	NA	intron (NM_001166226, intron 1 of 19)	intron (NM_001166226, intron 1 of 19)	3043	NM_001375409	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
108690	chr18	77037451	77037550	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-20445	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
172571	chr4	2443471	2444030	+	0	NA	intron (NM_001193282, intron 5 of 15)	intron (NM_001193282, intron 5 of 15)	24795	NM_001193282	402160		NM_001193282	ENSG00000206113	CFAP99	-	cilia and flagella associated protein 99	protein-coding
73730	chr15	45184671	45185280	+	0	NA	intron (NM_138356, intron 2 of 7)	intron (NM_138356, intron 2 of 7)	2991	NM_001301169	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
7047	chr1	31952001	31952400	+	0	NA	Intergenic	Intergenic	-13832	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
208196	chr7	65026471	65026630	+	0	NA	Intergenic	AluY|SINE|Alu	-11804	NR_033416	643180		NR_033416	ENSG00000290860	CCT6P3	CCT6-3P	chaperonin containing TCP1 subunit 6 pseudogene 3	pseudo
219535	chr8	76677971	76678200	+	0	NA	intron (NR_024360, intron 1 of 3)	intron (NR_024360, intron 1 of 3)	-3162	NM_024721	79776		NM_024721	ENSG00000091656	ZFHX4	ZFH4|ZHF4	zinc finger homeobox 4	protein-coding
175254	chr4	65177051	65177150	+	0	NA	Intergenic	L1PA2|LINE|L1	-172600	NR_033976	401134		NR_033976	ENSG00000250125	LINC02232	-	long intergenic non-protein coding RNA 2232	ncRNA
29218	chr10	68998121	68998380	+	0	NA	intron (NM_015634, intron 1 of 6)	AluSx3|SINE|Alu	9447	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
235883	chrX	51894611	51895350	+	0	NA	intron (NM_001005333, intron 3 of 13)	CpG	1357	NM_006986	9500		NM_006986	ENSG00000179222	MAGED1	DLXIN-1|NRAGE	MAGE family member D1	protein-coding
167879	chr3	135257621	135257750	+	0	NA	intron (NM_004441, intron 15 of 15)	L1PA2|LINE|L1	462425	NM_004441	2047		NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding
232414	chr9	136079571	136079730	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	15639	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
23890	chr1	234959621	234960080	+	0	NA	non-coding (NR_125945, exon 2 of 4)	non-coding (NR_125945, exon 2 of 4)	4149	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
238808	chrX	154403551	154403850	+	0	NA	intron (NM_001009932, intron 6 of 9)	intron (NM_001009932, intron 6 of 9)	3419	NR_000011	26778		NR_000011	ENSG00000207165	SNORA70	DXS648E|RNU70|U70	small nucleolar RNA, H/ACA box 70	snoRNA
54009	chr12	75477051	75477550	+	0	NA	Intergenic	LTR82B|LTR|ERVL	-3455	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
209885	chr7	91830051	91830380	+	0	NA	Intergenic	Intergenic	50487	NM_006980	7978		NM_006980	ENSG00000127989	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
219902	chr8	85827171	85827480	+	0	NA	non-coding (NR_003594, exon 1 of 1).10	non-coding (NR_003594, exon 1 of 1).10	617	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
140513	chr2	233211701	233212100	+	0	NA	Intergenic	MIR|SINE|MIR	-39671	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
47641	chr12	6267271	6267630	+	0	NA	Intergenic	Intergenic	-42882	NM_018173	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
19471	chr1	174972101	174972650	+	0	NA	intron (NM_001243764, intron 2 of 6)	intron (NM_001243764, intron 2 of 6)	7597	NM_001243764	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
13791	chr1	117368751	117369150	+	0	NA	intron (NM_006699, intron 1 of 12)	intron (NM_006699, intron 1 of 12)	1501	NM_006699	10905		NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding
106567	chr18	21707021	21707280	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2376	NM_138340	171586		NM_138340	ENSG00000158201	ABHD3	LABH3	abhydrolase domain containing 3, phospholipase	protein-coding
236569	chrX	72307851	72308030	+	0	NA	promoter-TSS (NM_001144886)	promoter-TSS (NM_001144886)	-783	NM_001144886	4435		NM_004143	ENSG00000125931	CITED1	MSG1	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1	protein-coding
24254	chr1	236381671	236381850	+	0	NA	Intergenic	L1MEc|LINE|L1	-12526	NM_145861	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
141616	chr2	241670171	241670330	+	0	NA	intron (NM_013325, intron 10 of 12)	intron (NM_013325, intron 10 of 12)	16565	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
137818	chr2	200383601	200384250	+	0	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	74975	NM_001282744	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
191046	chr6	3231071	3232500	+	0	NA	non-coding (NR_147505, exon 1 of 2)	non-coding (NR_147505, exon 1 of 2)	382	NR_147505	100422781		NR_147505		LOC100422781	-	uncharacterized LOC100422781	ncRNA
181585	chr5	43310951	43311450	+	0	NA	intron (NM_001324224, intron 1 of 9)	AluSz|SINE|Alu	1981	NM_001330663	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
51416	chr12	52012471	52012630	+	0	NA	intron (NM_001271856, intron 3 of 6)	AluSq2|SINE|Alu	2058	NM_001271856	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
223920	chr9	506401	506600	+	0	NA	intron (NM_001354332, intron 1 of 11)	intron (NM_001354332, intron 1 of 11)	1805	NM_015158	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
211191	chr7	102604401	102604980	+	0	NA	intron (NM_001079877, intron 5 of 19)	intron (NM_001079877, intron 5 of 19)	12066	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
634	chr1	1336071	1336950	+	0	NA	exon (NM_001330311, exon 15 of 15)	exon (NM_001330311, exon 15 of 15)	3198	NR_106866	102466740		NR_106866	ENSG00000284372	MIR6808	hsa-mir-6808	microRNA 6808	ncRNA
219652	chr8	80436051	80436450	+	0	NA	Intergenic	L2c|LINE|L2	-49343	NM_001277145	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
24432	chr1	243589301	243589500	+	0	NA	intron (NM_005465, intron 8 of 13)	L1MA10|LINE|L1	243224	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
121743	chr19	47742371	47742530	+	0	NA	3' UTR (NM_014601, exon 6 of 6)	3' UTR (NM_014601, exon 6 of 6)	-3096	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
202395	chr6	157849551	157850050	+	0	NA	intron (NM_016224, intron 1 of 17)	L2c|LINE|L2	26554	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
194625	chr6	33572401	33572600	+	0	NA	TTS (NM_001188)	TTS (NM_001188)	7776	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
200093	chr6	130186421	130186680	+	0	NA	intron (NM_001258275, intron 7 of 13)	intron (NM_001258275, intron 7 of 13)	29335	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
182137	chr5	56200971	56201500	+	0	NA	intron (NM_024669, intron 2 of 11)	intron (NM_024669, intron 2 of 11)	32095	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
236680	chrX	77137551	77137650	+	0	NA	Intergenic	L1PA4|LINE|L1	-123068	NR_110400	101928469		NR_110400	ENSG00000280870	MIR325HG	MIR384HG	MIR325 host gene	ncRNA
37932	chr11	34245771	34245930	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	112160	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
26716	chr10	22668021	22668500	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	45848	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
36607	chr11	6744171	6744900	+	0	NA	Intergenic	L2a|LINE|L2	-22656	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
188515	chr5	155710871	155711430	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-616014	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
148686	chr21	6225721	6225980	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	25920	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
177771	chr4	122729051	122729150	+	0	NA	Intergenic	MER70C|LTR|ERVL	3358	NR_024041	729338		NR_024041		CETN4P	-	centrin 4, pseudogene	pseudo
136186	chr2	174546751	174547450	+	0	NA	Intergenic	LTR78|LTR|ERV1	10972	NR_004394	26827		NR_004394	ENSG00000206625	RNU6-1	RNU6|RNU6A|U6|U6-1	RNA, U6 small nuclear 1	snRNA
129778	chr2	71150471	71150630	+	0	NA	TTS (NM_005791)	TTS (NM_005791)	19916	NM_005791	10199		NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P|PPP1R106	M-phase phosphoprotein 10	protein-coding
69576	chr14	97106351	97106450	+	0	NA	Intergenic	Intergenic	-48457	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
212638	chr7	129468551	129468930	+	0	NA	intron (NM_001134336, intron 17 of 19)	MLT1O|LTR|ERVL-MaLR	-33791	NM_001195243	100287482		NM_001195243	ENSG00000240204	SMKR1	-	small lysine rich protein 1	protein-coding
155172	chr22	37740321	37741380	+	0	NA	intron (NM_001039141, intron 10 of 23)	intron (NM_001039141, intron 10 of 23)	5094	NR_160697	102724378		NR_160696		LOC102724378	-	uncharacterized LOC102724378	ncRNA
178129	chr4	142128221	142129030	+	0	NA	intron (NM_001385459, intron 11 of 18)	intron (NM_001385459, intron 11 of 18)	177207	NM_001385460	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
233770	chrX	1416771	1417130	+	0	NA	intron (NM_001173473, intron 11 of 12).2	(AC)n|Simple_repeat|Simple_repeat	16419	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
50909	chr12	49294651	49294750	+	0	NA	promoter-TSS (NM_006262)	promoter-TSS (NM_006262)	-447	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
81808	chr16	11548601	11548800	+	0	NA	non-coding (NR_024320, exon 4 of 4)	non-coding (NR_024320, exon 4 of 4)	-21453	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
193393	chr6	30396501	30397600	+	0	NA	Intergenic	Intergenic	51894	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
109513	chr19	840301	841030	+	0	NA	promoter-TSS (NM_002777)	promoter-TSS (NM_002777)	-334	NM_002777	5657		NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
4138	chr1	19334871	19336000	+	0	NA	Intergenic	AluSx4|SINE|Alu	23109	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
52614	chr12	56241371	56241930	+	0	NA	3' UTR (NM_173595, exon 28 of 28)	3' UTR (NM_173595, exon 28 of 28)	10933	NM_001135195	283375		NM_173596	ENSG00000139540	SLC39A5	LZT-Hs7|MYP24|ZIP5	solute carrier family 39 member 5	protein-coding
106710	chr18	23457901	23458100	+	0	NA	intron (NR_145477, intron 1 of 12)	AluSz|SINE|Alu	4713	NR_145477	8780		NM_003831	ENSG00000101782	RIOK3	SUDD	RIO kinase 3	protein-coding
138238	chr2	202950751	202950850	+	0	NA	intron (NR_148034, intron 4 of 11)	intron (NR_148034, intron 4 of 11)	38525	NM_001322427	79800		NM_024744	ENSG00000138380	CARF	ALS2CR8|NYD-SP24	calcium responsive transcription factor	protein-coding
28565	chr10	50658371	50659000	+	0	NA	Intergenic	Intergenic	33734	NR_126411	104355295		NR_126411		SGMS1-AS1	-	SGMS1 antisense RNA 1	ncRNA
111941	chr19	4791051	4793250	+	0	NA	exon (NM_018708, exon 1 of 1)	exon (NM_018708, exon 1 of 1)	416	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
127675	chr2	43187871	43188230	+	0	NA	Intergenic	AluJb|SINE|Alu	38556	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
119009	chr19	38898101	38898330	+	0	NA	intron (NM_001193286, intron 1 of 12)	intron (NM_001193286, intron 1 of 12)	1403	NM_030593	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
139928	chr2	230778371	230778530	+	0	NA	intron (NM_016289, intron 2 of 8)	intron (NM_016289, intron 2 of 8)	64902	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
52775	chr12	56682721	56684700	+	0	NA	intron (NM_001282601, intron 1 of 6)	AluYe5|SINE|Alu	4574	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
66558	chr14	62502121	62502200	+	0	NA	Intergenic	Intergenic	-362187	NR_104063	101954204		NR_104063	ENSG00000259142	LINC00644	-	long intergenic non-protein coding RNA 644	ncRNA
13982	chr1	120598451	120598850	+	0	NA	intron (NR_144516, intron 5 of 43)	MLT1F2|LTR|ERVL-MaLR	39965	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
67494	chr14	70930001	70930400	+	0	NA	intron (NM_014982, intron 1 of 35)	FAM|SINE|Alu	22741	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
49886	chr12	39331521	39332430	+	0	NA	intron (NM_001378440, intron 21 of 36)	intron (NM_001378440, intron 21 of 36)	111145	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
81101	chr16	4364051	4365330	+	0	NA	intron (NM_001351729, intron 12 of 27)	intron (NM_001351729, intron 12 of 27)	-7158	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
85109	chr16	34063771	34064500	+	0	NA	Intergenic	Intergenic	-99443	NR_162093	113218496		NR_162093		MIR9901	-	microRNA 9901	ncRNA
79587	chr16	1009121	1009580	+	0	NA	Intergenic	AluSx1|SINE|Alu	27580	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
94436	chr17	29150351	29150530	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	-10051	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
28590	chr10	52314771	52314930	+	0	NA	promoter-TSS (NR_038277)	promoter-TSS (NR_038277)	569	NM_012242	22943		NM_012242	ENSG00000107984	DKK1	DKK-1|SK	dickkopf WNT signaling pathway inhibitor 1	protein-coding
121644	chr19	47479621	47479880	+	0	NA	intron (NM_007059, intron 8 of 11)	intron (NM_007059, intron 8 of 11)	4469	NR_111923	11133		NM_007059	ENSG00000118162	KPTN	2E4|KICS4|MRT41	kaptin, actin binding protein	protein-coding
157269	chr22	44023001	44023200	+	0	NA	intron (NM_001003828, intron 2 of 13)	intron (NM_001003828, intron 2 of 13)	-1202	NM_013327	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
187039	chr5	139845821	139846480	+	0	NA	TTS (NM_004883)	TTS (NM_004883)	50342	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
114296	chr19	11738071	11739950	+	0	NA	promoter-TSS (NM_001297610)	promoter-TSS (NM_001297610)	-64	NM_017507	55552		NM_017507	ENSG00000197933	ZNF823	HSZFP36	zinc finger protein 823	protein-coding
154216	chr22	31520121	31520380	+	0	NA	intron (NM_001258326, intron 2 of 30)	L1ME3B|LINE|L1	23714	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
96712	chr17	41579521	41579950	+	0	NA	Intergenic	Intergenic	7160	NM_000526	3861		NM_000526	ENSG00000186847	KRT14	CK14|EBS1|EBS1A|EBS1B|EBS1C|EBS1D|EBS3|EBS4|K14|NFJ	keratin 14	protein-coding
228727	chr9	109143521	109144230	+	0	NA	intron (NM_014334, intron 3 of 4)	intron (NM_014334, intron 3 of 4)	23374	NM_014334	23732		NM_014334	ENSG00000260230	FRRS1L	C9orf4|CG-6|CG6|DEE37|EIEE37	ferric chelate reductase 1 like	protein-coding
39490	chr11	61016901	61017600	+	0	NA	intron (NM_006725, intron 9 of 12)	intron (NM_006725, intron 9 of 12)	45570	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
32584	chr10	103481921	103482250	+	0	NA	intron (NR_120675, intron 3 of 3)	intron (NR_120675, intron 3 of 3)	-2845	NM_001129742	119395		NM_182494	ENSG00000183128	CALHM3	FAM26A|bA225H22.7	calcium homeostasis modulator 3	protein-coding
119303	chr19	39831921	39832550	+	0	NA	intron (NM_006484, intron 1 of 11)	intron (NM_006484, intron 1 of 11)	1927	NM_006483	9149		NM_004714	ENSG00000105204	DYRK1B	AOMS3|MIRK	dual specificity tyrosine phosphorylation regulated kinase 1B	protein-coding
167846	chr3	134197701	134198000	+	0	NA	intron (NM_001005861, intron 6 of 14)	intron (NM_001005861, intron 6 of 14)	52894	NM_001005861	6259		NM_002958	ENSG00000163785	RYK	D3S3195|JTK5|JTK5A|RYK1	receptor like tyrosine kinase	protein-coding
73828	chr15	49152901	49153500	+	0	NA	intron (NM_001143887, intron 1 of 12)	FLAM_A|SINE|Alu	2399	NM_001143887	9318		NM_004236	ENSG00000166200	COPS2	ALIEN|CSN2|SGN2|TRIP15	COP9 signalosome subunit 2	protein-coding
206734	chr7	36639851	36640930	+	0	NA	intron (NM_001177506, intron 4 of 21)	L1M6B|LINE|L1	-40270	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
162432	chr3	48428051	48428150	+	0	NA	intron (NM_001130082, intron 1 of 37)	L2b|LINE|L2	1363	NM_002673	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
56747	chr12	120141571	120141930	+	0	NA	intron (NM_006836, intron 44 of 57)	L2b|LINE|L2	13749	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
193099	chr6	28898071	28898650	+	0	NA	Intergenic	AluSg|SINE|Alu	1830	NR_104117	414760		NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14	ncRNA
178994	chr4	163497371	163497630	+	0	NA	intron (NM_018352, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	2810	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
75384	chr15	65735321	65735780	+	0	NA	intron (NM_001376919, intron 7 of 31)	Charlie1a|DNA|hAT-Charlie	-16218	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
33770	chr10	122567101	122567350	+	0	NA	intron (NM_007329, intron 2 of 52)	intron (NM_007329, intron 2 of 52)	6471	NM_001377530	1755		NM_004406	ENSG00000187908	DMBT1	GP340|SAG|SALSA|muclin	deleted in malignant brain tumors 1	protein-coding
3043	chr1	12150321	12151330	+	0	NA	Intergenic	Intergenic	-16118	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
183851	chr5	87076151	87076250	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	38754	NR_036243	100422887		NR_036243	ENSG00000265919	MIR4280	-	microRNA 4280	ncRNA
174462	chr4	39730551	39730650	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSx1|SINE|Alu	32464	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
155404	chr22	38351721	38351980	+	0	NA	intron (NR_002821, intron 4 of 4)	intron (NR_002821, intron 4 of 4)	-33766	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
39465	chr11	60982001	60982470	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	10555	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
204436	chr7	3200551	3200650	+	0	NA	Intergenic	Intergenic	-42027	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
105200	chr17	82316711	82318880	+	0	NA	promoter-TSS (NM_006137)	promoter-TSS (NM_006137)	-187	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
187333	chr5	141648201	141648400	+	0	NA	intron (NM_033449, intron 7 of 19)	L2a|LINE|L2	3118	NM_033449	89848		NM_033449	ENSG00000197948	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
5524	chr1	25801271	25801430	+	0	NA	intron (NM_206926, intron 2 of 11)	MIRc|SINE|MIR	1157	NM_020451	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
34894	chr11	380271	380780	+	0	NA	intron (NM_178537, intron 18 of 19)	CpG-3732	11026	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
193142	chr6	29625551	29625650	+	0	NA	intron (NM_021903, intron 1 of 17).7	intron (NM_021903, intron 1 of 17).7	2628	NM_021903	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
114268	chr19	11575771	11575930	+	0	NA	intron (NM_001111034, intron 5 of 5)	AluSz|SINE|Alu	1795	NM_001611	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
222071	chr8	130326221	130326600	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-29877	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
208072	chr7	56086051	56086350	+	0	NA	intron (NM_001258459, intron 4 of 10)	Tigger7|DNA|TcMar-Tigger	6752	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
21447	chr1	205478901	205479100	+	0	NA	Intergenic	Intergenic	-22914	NR_103783								
179355	chr4	183321071	183321450	+	0	NA	promoter-TSS (NM_001111319)	promoter-TSS (NM_001111319)	-984	NM_001111319	53842		NM_001111319	ENSG00000177300	CLDN22	CLDN21	claudin 22	protein-coding
73121	chr15	41233701	41233900	+	0	NA	intron (NM_007236, intron 1 of 6)	intron (NM_007236, intron 1 of 6)	2532	NM_007236	11261		NM_007236	ENSG00000187446	CHP1	CHP|SLC9A1BP|SPAX9|Sid470p|p22|p24	calcineurin like EF-hand protein 1	protein-coding
40298	chr11	63867871	63868030	+	0	NA	intron (NM_004954, intron 1 of 16)	L2c|LINE|L2	-20587	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
141134	chr2	239158701	239158900	+	0	NA	intron (NM_006037, intron 6 of 26)	intron (NM_006037, intron 6 of 26)	36657	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
125557	chr2	15637251	15637630	+	0	NA	Intergenic	Intergenic	45572	NM_004939	1653		NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding
183965	chr5	88674601	88675150	+	0	NA	intron (NR_152232, intron 1 of 3)	CpG	-1343	NR_146284	109729137		NR_146284	ENSG00000245864	MEF2C-AS2	-	MEF2C antisense RNA 2	ncRNA
174575	chr4	40236001	40236550	+	0	NA	intron (NM_001278364, intron 3 of 4)	L2c|LINE|L2	39244	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
2703	chr1	10643671	10643830	+	0	NA	intron (NM_001079843, intron 18 of 20)	intron (NM_001079843, intron 18 of 20)	152896	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
41303	chr11	65876151	65876250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3400	NR_037718	30008		NM_016938	ENSG00000172638	EFEMP2	ARCL1B|FBLN4|MBP1|UPH1	EGF containing fibulin extracellular matrix protein 2	protein-coding
206633	chr7	35984921	35985550	+	0	NA	Intergenic	Intergenic	-110075	NR_108089	101928618		NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
221629	chr8	125822201	125822400	+	0	NA	Intergenic	L2a|LINE|L2	128897	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
204897	chr7	6085721	6085980	+	0	NA	Intergenic	AluSg|SINE|Alu	-19099	NM_032172	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
134899	chr2	149313551	149313730	+	0	NA	Intergenic	L1MEi|LINE|L1	-16345	NM_001195685	130574		NM_194317	ENSG00000187123	LYPD6	-	LY6/PLAUR domain containing 6	protein-coding
43855	chr11	88179151	88179450	+	0	NA	Intergenic	Intergenic	2798	NR_036124	100423040		NR_036124	ENSG00000266581	MIR3166	-	microRNA 3166	ncRNA
42335	chr11	68495271	68495630	+	0	NA	intron (NM_001352362, intron 2 of 24)	L1MB8|LINE|L1	34698	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
118795	chr19	38416621	38416880	+	0	NA	intron (NM_001146207, intron 6 of 14)	L2|LINE|L2	9469	NM_001146202	115727		NM_052949	ENSG00000171777	RASGRP4	-	RAS guanyl releasing protein 4	protein-coding
158715	chr3	8355801	8356000	+	0	NA	intron (NR_033378, intron 3 of 3)	intron (NR_033378, intron 3 of 3)	145758	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
215669	chr8	687551	688830	+	0	NA	intron (NM_207332, intron 3 of 5)	CpG	43034	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
231338	chr9	130235701	130236700	+	0	NA	3' UTR (NM_001128826, exon 8 of 8)	3' UTR (NM_001128826, exon 8 of 8)	-5187	NR_162140	113219459		NR_162140		MIR12126	-	microRNA 12126	ncRNA
238977	chrX	155460201	155460800	+	0	NA	promoter-TSS (NM_001017990).3	promoter-TSS (NM_001017990).3	-495	NM_001017990	474382		NM_001017990	ENSG00000274183	H2AB1	H2A.B|H2A.B.2|H2A.Bbd|H2AFB1	H2A.B variant histone 1	protein-coding
126248	chr2	27080801	27082050	+	0	NA	intron (NM_007046, intron 3 of 7)	intron (NM_007046, intron 3 of 7)	2810	NM_007046	11117		NM_007046	ENSG00000138080	EMILIN1	EMI|EMILIN|HMN10|HMND10|gp115	elastin microfibril interfacer 1	protein-coding
108979	chr18	79678001	79678200	+	0	NA	intron (NR_136643, intron 1 of 4)	intron (NR_136643, intron 1 of 4)	1645	NR_136643	284241		NM_182570	ENSG00000178412	CTDP1-DT	-	CTDP1 divergent transcript	ncRNA
88611	chr16	85606871	85607100	+	0	NA	Intergenic	Intergenic	-4424	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
200399	chr6	134380171	134380550	+	0	NA	Intergenic	Intergenic	-57356	NR_038216	154092		NR_038216	ENSG00000236700	LINC01010	-	long intergenic non-protein coding RNA 1010	ncRNA
12736	chr1	109553871	109554480	+	0	NA	intron (NM_006496, intron 1 of 8)	L1PB1|LINE|L1	5560	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
130397	chr2	85321121	85321400	+	0	NA	3' UTR (NM_001206841, exon 4 of 4)	3' UTR (NM_001206841, exon 4 of 4)	6729	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
153153	chr22	23776171	23776730	+	0	NA	intron (NR_133013, intron 1 of 7).2	intron (NR_133013, intron 1 of 7).2	3601	NR_133013	4320		NM_005940	ENSG00000099953	MMP11	SL-3|ST3|STMY3	matrix metallopeptidase 11	protein-coding
96224	chr17	39780001	39780630	+	0	NA	intron (NM_001284514, intron 6 of 8)	intron (NM_001284514, intron 6 of 8)	-2090	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
151785	chr22	18148101	18148750	+	0	NA	Intergenic	Intergenic	-1745	NM_017414	11274		NM_017414	ENSG00000184979	USP18	ISG43|PTORCH2|UBP43	ubiquitin specific peptidase 18	protein-coding
169458	chr3	168047271	168047450	+	0	NA	intron (NM_001308155, intron 2 of 14)	intron (NM_001308155, intron 2 of 14)	48564	NM_001308155	27333		NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
172820	chr4	3070871	3071030	+	0	NA	intron (NR_045414, intron 1 of 2)	intron (NR_045414, intron 1 of 2)	3564	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
105081	chr17	82103501	82104700	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-5864	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
15862	chr1	151444771	151445180	+	0	NA	intron (NM_015100, intron 1 of 18)	AluJr4|SINE|Alu	-2770	NM_207171	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
215580	chr7	158831471	158832150	+	0	NA	Intergenic	Intergenic	-2301	NM_020728	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
53813	chr12	69271921	69272780	+	0	NA	TTS (NR_031692)	TTS (NR_031692)	868	NR_031692	100302182		NR_031692	ENSG00000283476	MIR1279	MIRN1279|hsa-mir-1279	microRNA 1279	ncRNA
54663	chr12	93379511	93380150	+	0	NA	intron (NM_001301023, intron 1 of 4)	intron (NM_001301023, intron 1 of 4)	1252	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
184983	chr5	113521551	113522050	+	0	NA	intron (NM_001345976, intron 2 of 27)	intron (NM_001345976, intron 2 of 27)	8106	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
79249	chr16	399851	399950	+	0	NA	intron (NM_001286433, intron 3 of 3)	intron (NM_001286433, intron 3 of 3)	-1985	NM_020664	26063		NM_020664	ENSG00000242612	DECR2	PDCR|SDR17C1	2,4-dienoyl-CoA reductase 2	protein-coding
64183	chr14	22980351	22981380	+	0	NA	intron (NM_001289097, intron 1 of 1)	CpG	1686	NM_001289097	84962		NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
140132	chr2	231548201	231548600	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	-17955	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
143264	chr20	25090421	25091730	+	0	NA	Intergenic	Intergenic	-8934	NM_001256271	30813		NM_014588	ENSG00000100987	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
103790	chr17	79026501	79027030	+	0	NA	intron (NR_049769, intron 1 of 3)	intron (NR_049769, intron 1 of 3)	890	NR_040019	100507410		NR_040018		C1QTNF1-AS1	-	C1QTNF1 antisense RNA 1	ncRNA
226408	chr9	70419901	70421500	+	0	NA	Intergenic	Intergenic	-6043	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
65700	chr14	52743501	52743780	+	0	NA	intron (NM_001130701, intron 2 of 11)	L1MC4a|LINE|L1	13474	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
196313	chr6	43067801	43068200	+	0	NA	TTS (NM_138343)	TTS (NM_138343)	8087	NM_001289034	89953		NM_138343	ENSG00000137171	KLC4	KNSL8|bA387M24.3	kinesin light chain 4	protein-coding
4568	chr1	22057921	22058630	+	0	NA	intron (NM_044472, intron 1 of 5)	intron (NM_044472, intron 1 of 5)	5566	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
50672	chr12	48842421	48842750	+	0	NA	intron (NM_004818, intron 3 of 16)	SVA_D|Retroposon|SVA	9578	NM_004818	9416		NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
184212	chr5	95958951	95960050	+	0	NA	intron (NM_012081, intron 1 of 11)	intron (NM_012081, intron 1 of 11)	2351	NM_012081	22936		NM_012081	ENSG00000118985	ELL2	MRCCAT1	elongation factor for RNA polymerase II 2	protein-coding
99146	chr17	49347351	49347830	+	0	NA	intron (NR_135579, intron 1 of 7)	L1MC5|LINE|L1	-13575	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
129495	chr2	69621801	69622200	+	0	NA	intron (NM_001371577, intron 2 of 14)	LTR12C|LTR|ERV1	21738	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
102158	chr17	75125921	75126500	+	0	NA	intron (NM_024585, intron 2 of 2)	intron (NM_024585, intron 2 of 2)	5532	NR_045513	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
183300	chr5	76583071	76583800	+	0	NA	intron (NM_006633, intron 5 of 35)	intron (NM_006633, intron 5 of 35)	25534	NR_134278	101929109		NR_134278	ENSG00000249713	LOC101929109	-	uncharacterized LOC101929109	ncRNA
190926	chr6	2866371	2866530	+	0	NA	intron (NR_033851, intron 1 of 1)	MER21C|LTR|ERVL	10060	NR_033851	221756		NM_182544		SERPINB9P1	SERPINB9P	serpin family B member 9 pseudogene 1	pseudo
155047	chr22	37493821	37494080	+	0	NA	intron (NM_014550, intron 16 of 19)	intron (NM_014550, intron 16 of 19)	-7563	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
181053	chr5	36168551	36169050	+	0	NA	intron (NM_032637, intron 5 of 9)	intron (NM_032637, intron 5 of 9)	16689	NM_032637	6502		NM_005983	ENSG00000145604	SKP2	FBL1|FBXL1|FLB1|p45	S-phase kinase associated protein 2	protein-coding
61926	chr13	78121471	78121780	+	0	NA	intron (NR_047001, intron 1 of 5)	intron (NR_047001, intron 1 of 5)	66770	NR_047001	100874222		NR_047001	ENSG00000234377	OBI1-AS1	POU4F1-AS1|RNF219-AS1	OBI1 antisense RNA 1	ncRNA
23423	chr1	228397501	228397700	+	0	NA	promoter-TSS (NR_106800)	promoter-TSS (NR_106800)	-491	NR_106800	102465444		NR_106800	ENSG00000284311	MIR6742	hsa-mir-6742	microRNA 6742	ncRNA
176564	chr4	98638971	98639950	+	0	NA	intron (NM_005723, intron 1 of 7)	AluJr|SINE|Alu	19151	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
185176	chr5	119357671	119358350	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	1991	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
23375	chr1	228170601	228170800	+	0	NA	intron (NM_001010867, intron 1 of 2)	intron (NM_001010867, intron 1 of 2)	-3870	NM_001310327	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
103461	chr17	78318771	78319330	+	0	NA	Intergenic	Intergenic	-40558	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
8282	chr1	39973171	39973930	+	0	NA	Intergenic	Intergenic	18405	NM_001349822	84879		NM_032793	ENSG00000168389	MFSD2A	HsMFSD2A|MCPH15|MFSD2|NEDMISBA|NLS1|SLC59A1	MFSD2 lysolipid transporter A, lysophospholipid	protein-coding
175311	chr4	68310851	68311150	+	0	NA	3' UTR (NM_133370, exon 16 of 16)	3' UTR (NM_133370, exon 16 of 16)	39090	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
89713	chr16	89410801	89411450	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-19793	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
217629	chr8	30055351	30055650	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	27564	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
192508	chr6	25009001	25009600	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	32988	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
109132	chr18	80171931	80172580	+	0	NA	TTS (NR_028339)	TTS (NR_028339)	24331	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
87850	chr16	75761851	75761950	+	0	NA	Intergenic	Intergenic	-35410	NM_001355613	105371346		NM_001355613	ENSG00000283755	CPHXL	CPHXL1	cytoplasmic polyadenylated homeobox like	protein-coding
47349	chr12	1984951	1985050	+	0	NA	intron (NM_152640, intron 3 of 8).2	L1MEf|LINE|L1	19457	NM_152640	196513		NM_152640	ENSG00000151065	DCP1B	DCP1	decapping mRNA 1B	protein-coding
205440	chr7	17010721	17010980	+	0	NA	Intergenic	Intergenic	-128867	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
8611	chr1	41640271	41641230	+	0	NA	intron (NM_001127714, intron 1 of 7)	MIRb|SINE|MIR	-156067	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
97688	chr17	44310851	44311300	+	0	NA	intron (NM_001144825, intron 1 of 10)	MIR|SINE|MIR	2474	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
29142	chr10	68599301	68599600	+	0	NA	intron (NM_030625, intron 2 of 11)	intron (NM_030625, intron 2 of 11)	39113	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
199367	chr6	116250401	116251280	+	0	NA	3' UTR (NM_021648, exon 1 of 1)	3' UTR (NM_021648, exon 1 of 1)	3235	NM_021648	23270		NM_021648	ENSG00000187189	TSPYL4	dJ486I3.2	TSPY like 4	protein-coding
179589	chr4	185393671	185394030	+	0	NA	intron (NM_001385602, intron 1 of 8)	intron (NM_001385602, intron 1 of 8)	2074	NM_001385603	55805		NM_018409	ENSG00000109771	LRP2BP	-	LRP2 binding protein	protein-coding
148328	chr20	63757801	63758150	+	0	NA	intron (NM_025224, intron 3 of 4)	intron (NM_025224, intron 3 of 4)	18199	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
165681	chr3	101870801	101871450	+	0	NA	Intergenic	L1ME2|LINE|L1	21611	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
58704	chr12	132563051	132563530	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-18707	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
110021	chr19	1446901	1448000	+	0	NA	Intergenic	Intergenic	-2671	NM_005883	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
132375	chr2	105768001	105768350	+	0	NA	intron (NM_001004722, intron 1 of 3)	MER33|DNA|hAT-Charlie	23112	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
200520	chr6	136113851	136113950	+	0	NA	intron (NM_018945, intron 3 of 12)	intron (NM_018945, intron 3 of 12)	-41073	NR_149042	644135		NR_149042	ENSG00000237596	PDE7B-AS1	-	PDE7B antisense RNA 1	ncRNA
126139	chr2	26174701	26175400	+	0	NA	intron (NM_001168241, intron 1 of 5)	intron (NM_001168241, intron 1 of 5)	1962	NM_001168241	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
66445	chr14	61539751	61540250	+	0	NA	intron (NM_006255, intron 12 of 13)	L3|LINE|CR1	30194	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
167391	chr3	128880821	128881080	+	0	NA	intron (NR_033426, intron 1 of 17)	MIR|SINE|MIR	1330	NM_014049	28976		NM_014049	ENSG00000177646	ACAD9	MC1DN20|NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
237058	chrX	103447001	103447280	+	0	NA	Intergenic	Intergenic	70102	NM_014380	27018		NM_014380	ENSG00000166681	BEX3	Bex|DXS6984E|HGR74|NADE|NGFRAP1	brain expressed X-linked 3	protein-coding
132840	chr2	110748101	110748750	+	0	NA	intron (NM_001371254, intron 1 of 18)	intron (NM_001371254, intron 1 of 18)	15852	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
170293	chr3	184326271	184326830	+	0	NA	TTS (NR_003055)	TTS (NR_003055)	854	NR_003055	692107		NR_003055	ENSG00000212158	SNORD66	HBII-142	small nucleolar RNA, C/D box 66	snoRNA
64728	chr14	34511521	34511950	+	0	NA	Intergenic	AluJb|SINE|Alu	27966	NM_018453	55837		NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding
12532	chr1	108561741	108562380	+	0	NA	intron (NM_001010883, intron 1 of 10)	MIRb|SINE|MIR	1960	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
45069	chr11	117061901	117062200	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluSz|SINE|Alu	36378	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
179660	chr4	189881271	189881450	+	0	NA	promoter-TSS (NR_132380)	promoter-TSS (NR_132380)	-155	NR_132380	105377617		NR_132380	ENSG00000250666	LINC01596	-	long intergenic non-protein coding RNA 1596	ncRNA
101123	chr17	65026821	65027800	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	28464	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
41061	chr11	65490501	65490700	+	0	NA	Intergenic	Intergenic	-7138	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
219427	chr8	71839301	71839750	+	0	NA	Intergenic	Intergenic	-3598	NR_033652	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
182028	chr5	55540921	55541780	+	0	NA	Intergenic	Intergenic	-6272	NR_103485	8611		NM_003711	ENSG00000067113	PLPP1	LLP1a|LPP1|PAP-2a|PAP2|PPAP2A	phospholipid phosphatase 1	protein-coding
238124	chrX	136662071	136662480	+	0	NA	Intergenic	Intergenic	14117	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
130073	chr2	74484271	74484430	+	0	NA	intron (NR_164770, intron 2 of 11)	intron (NR_164770, intron 2 of 11)	1269	NR_164771	64427		NM_022492	ENSG00000115282	TTC31	-	tetratricopeptide repeat domain 31	protein-coding
11136	chr1	86708901	86709300	+	0	NA	intron (NM_001206653, intron 1 of 7)	intron (NM_001206653, intron 1 of 7)	4524	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
6410	chr1	27993201	27994000	+	0	NA	intron (NR_104214, intron 14 of 16)	intron (NR_104214, intron 14 of 16)	33627	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
98765	chr17	48112771	48113930	+	0	NA	exon (NM_001330320, exon 4 of 7)	exon (NM_001330320, exon 4 of 7)	5584	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
91822	chr17	7135701	7136650	+	0	NA	Intergenic	AluSc|SINE|Alu	-21364	NM_001181	433		NM_001181	ENSG00000161944	ASGR2	ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2	asialoglycoprotein receptor 2	protein-coding
48626	chr12	10381171	10382850	+	0	NA	intron (NR_120430, intron 3 of 3)	L1MA5|LINE|L1	8031	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
72486	chr15	32614701	32616800	+	0	NA	5' UTR (NM_001368319, exon 1 of 14).3	5' UTR (NM_001368319, exon 1 of 14).3	246	NM_001286480	9824		NM_014783	ENSG00000198826	ARHGAP11A	GAP (1-12)	Rho GTPase activating protein 11A	protein-coding
45603	chr11	118899651	118900380	+	0	NA	non-coding (NR_165445, exon 6 of 7)	non-coding (NR_165445, exon 6 of 7)	6623	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
50225	chr12	46227771	46228230	+	0	NA	intron (NM_001278387, intron 6 of 17)	intron (NM_001278387, intron 6 of 17)	38516	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
91993	chr17	7436501	7437430	+	0	NA	exon (NM_001320444, exon 2 of 2)	exon (NM_001320444, exon 2 of 2)	-1333	NR_130156	2256		NM_004112	ENSG00000161958	FGF11	FGF-11|FHF-3|FHF3	fibroblast growth factor 11	protein-coding
77470	chr15	84501951	84502050	+	0	NA	promoter-TSS (NR_033787).2	promoter-TSS (NR_033787).2	-575	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
30667	chr10	80491571	80492100	+	0	NA	intron (NM_001128309, intron 2 of 5)	intron (NM_001128309, intron 2 of 5)	23594	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
26388	chr10	16915371	16915630	+	0	NA	intron (NM_001081, intron 46 of 66)	intron (NM_001081, intron 46 of 66)	-98046	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
176105	chr4	83009851	83011120	+	0	NA	non-coding (NR_110254, exon 1 of 13)	non-coding (NR_110254, exon 1 of 13)	338	NM_194282	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
204879	chr7	5984951	5985050	+	0	NA	intron (NR_136154, intron 11 of 14)	intron (NR_136154, intron 11 of 14)	-14317	NM_173565	222967		NM_173565	ENSG00000155026	RSPH10B	-	radial spoke head 10 homolog B	protein-coding
134877	chr2	148815021	148815780	+	0	NA	Intergenic	Intergenic	-59827	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
98790	chr17	48173251	48173550	+	0	NA	intron (NM_001075099, intron 9 of 12)	intron (NM_001075099, intron 9 of 12)	-16889	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
200377	chr6	134244921	134245380	+	0	NA	intron (NM_001143676, intron 2 of 13)	FLAM_C|SINE|Alu	-67289	NM_001143677	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
130379	chr2	85305821	85306080	+	0	NA	intron (NM_031283, intron 8 of 11)	intron (NM_031283, intron 8 of 11)	22039	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
44497	chr11	105610151	105610780	+	0	NA	promoter-TSS (NR_046356)	promoter-TSS (NR_046356)	-241	NM_001112812	2893		NM_000829	ENSG00000152578	GRIA4	GLUR4|GLUR4C|GLURD|GluA4|GluA4-ATD|NEDSGA	glutamate ionotropic receptor AMPA type subunit 4	protein-coding
163524	chr3	51499601	51500950	+	0	NA	promoter-TSS (NM_001349170)	promoter-TSS (NM_001349170)	-260	NM_001349169	9730		NM_014703	ENSG00000145041	DCAF1	RIP|VPRBP	DDB1 and CUL4 associated factor 1	protein-coding
62477	chr13	99383511	99383730	+	0	NA	intron (NR_026644, intron 8 of 8)	intron (NR_026644, intron 8 of 8)	27489	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
4491	chr1	21650401	21650600	+	0	NA	intron (NM_002885, intron 1 of 24)	intron (NM_002885, intron 1 of 24)	1398	NM_001145658	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
238999	chrX	156003751	156004050	+	0	NA	intron (NM_176786, intron 5 of 8)	intron (NM_176786, intron 5 of 8)	6204	NM_002186	3581		NM_002186	ENSG00000124334	IL9R	CD129|IL-9R	interleukin 9 receptor	protein-coding
108997	chr18	79696221	79696730	+	0	NA	intron (NM_001318511, intron 3 of 11)	intron (NM_001318511, intron 3 of 11)	15045	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
116153	chr19	17387571	17387730	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10308	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
57281	chr12	121636051	121636350	+	0	NA	intron (NM_032790, intron 2 of 2)	AluSx4|SINE|Alu	9650	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
26512	chr10	19815651	19816150	+	0	NA	promoter-TSS (NM_032812)	promoter-TSS (NM_032812)	-532	NM_032812	84898		NM_032812	ENSG00000120594	PLXDC2	PLXDC2-OT|TEM7R	plexin domain containing 2	protein-coding
88319	chr16	84294271	84294430	+	0	NA	promoter-TSS (NM_001282466)	promoter-TSS (NM_001282466)	-528	NM_021197	58189		NM_021197	ENSG00000103175	WFDC1	PS20	WAP four-disulfide core domain 1	protein-coding
33934	chr10	124612601	124613930	+	0	NA	exon (NM_022126, exon 7 of 7)	exon (NM_022126, exon 7 of 7)	-90763	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
8954	chr1	44357001	44357400	+	0	NA	Intergenic	Intergenic	-1921	NM_001301700	79033		NM_024066	ENSG00000117419	ERI3	PINT1|PRNPIP	ERI1 exoribonuclease family member 3	protein-coding
76080	chr15	72481301	72481950	+	0	NA	intron (NM_005744, intron 1 of 13)	AluSz|SINE|Alu	7295	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
227191	chr9	87950871	87951030	+	0	NA	Intergenic	L1P4d|LINE|L1	-11690	NR_149022	497256		NR_149022		LOC497256	-	uncharacterized LOC497256	ncRNA
120642	chr19	45071651	45071750	+	0	NA	TTS (NM_007056)	TTS (NM_007056)	-3927	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
117743	chr19	29651521	29651980	+	0	NA	Intergenic	L1ME1|LINE|L1	-13711	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
179948	chr5	777271	777830	+	0	NA	intron (NR_147095, intron 1 of 16)	LTR12D|LTR|ERV1	7179	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
118478	chr19	35901901	35902900	+	0	NA	promoter-TSS (NM_014266)	promoter-TSS (NM_014266)	-97	NM_032721	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
127941	chr2	46538221	46538680	+	0	NA	intron (NM_001371283, intron 1 of 3)	MLT1O|LTR|ERVL-MaLR	-4040	NM_012249	23433		NM_012249	ENSG00000119729	RHOQ	ARHQ|HEL-S-42|RASL7A|TC10|TC10A	ras homolog family member Q	protein-coding
63492	chr13	114198751	114199050	+	0	NA	Intergenic	CpG	-35945	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
17984	chr1	160511801	160512330	+	0	NA	intron (NM_001184714, intron 1 of 7)	L1PA10|LINE|L1	11190	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
111675	chr19	4258801	4259300	+	0	NA	intron (NM_018074, intron 5 of 7)	MER68|LTR|ERVL	11970	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
51175	chr12	50218401	50218600	+	0	NA	intron (NM_001113547, intron 1 of 7)	intron (NM_001113547, intron 1 of 7)	4158	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
214450	chr7	150193951	150194130	+	0	NA	intron (NM_001351028, intron 6 of 9)	L1M4|LINE|L1	27060	NR_147018	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
21826	chr1	207332901	207333650	+	0	NA	intron (NM_001300904, intron 6 of 10)	L1MEg|LINE|L1	11597	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
196019	chr6	42022301	42023330	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	26079	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
171973	chr4	915521	915830	+	0	NA	intron (NM_005255, intron 1 of 27)	L1ME1|LINE|L1	16641	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
193077	chr6	28781801	28782050	+	0	NA	Intergenic	AluYj4|SINE|Alu	81752	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
69772	chr14	99172921	99173380	+	0	NA	3' UTR (NM_138576, exon 4 of 4)	3' UTR (NM_138576, exon 4 of 4)	99047	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
146649	chr20	50383671	50384050	+	0	NA	Intergenic	Intergenic	-62518	NR_109950	101927586		NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA
208147	chr7	64528751	64529050	+	0	NA	intron (NM_001130022, intron 3 of 3)	L1PB1|LINE|L1	34171	NM_178558	340252		NM_178558	ENSG00000173041	ZNF680	-	zinc finger protein 680	protein-coding
71684	chr15	20102171	20102580	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-180369	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
13266	chr1	112720571	112720730	+	0	NA	intron (NR_169586, intron 2 of 5)	intron (NR_169586, intron 2 of 5)	1745	NR_169586	284467		NM_182759	ENSG00000184599	TAFA3	FAM19A3|TAFA-3	TAFA chemokine like family member 3	protein-coding
138149	chr2	202357251	202357680	+	0	NA	Intergenic	Intergenic	-18862	NM_001204	659		NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding
30378	chr10	78037051	78037450	+	0	NA	exon (NM_001026, exon 4 of 5)	exon (NM_001026, exon 4 of 5)	3387	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
117644	chr19	23760351	23761200	+	0	NA	Intergenic	AluSx|SINE|Alu	-1884	NM_138286	148213		NM_138286	ENSG00000196172	ZNF681	-	zinc finger protein 681	protein-coding
96516	chr17	40332471	40332830	+	0	NA	intron (NM_001145302, intron 2 of 6)	intron (NM_001145302, intron 2 of 6)	-9516	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
56969	chr12	120538151	120538250	+	0	NA	intron (NM_001330474, intron 1 of 16)	intron (NM_001330474, intron 1 of 16)	3844	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
178272	chr4	143907771	143908030	+	0	NA	Intergenic	Intergenic	-2341	NM_198682	2996		NM_002102	ENSG00000197465	GYPE	GPE|GYPA|MNS|MiIX	glycophorin E (MNS blood group)	protein-coding
2932	chr1	11761601	11762400	+	0	NA	promoter-TSS (NM_001010881)	promoter-TSS (NM_001010881)	-193	NM_001010881	284498		NM_001010881	ENSG00000215910	C1orf167	-	chromosome 1 open reading frame 167	protein-coding
155229	chr22	37912051	37912700	+	0	NA	exon (NM_033386, exon 3 of 16)	exon (NM_033386, exon 3 of 16)	6078	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
4001	chr1	18921351	18922000	+	0	NA	intron (NM_001136265, intron 1 of 8)	MIRb|SINE|MIR	-18876	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
124487	chr19	58564201	58564400	+	0	NA	intron (NM_198055, intron 5 of 5)	intron (NM_198055, intron 5 of 5)	5114	NR_027334	100131691		NR_027334	ENSG00000267858	MZF1-AS1	-	MZF1 antisense RNA 1	ncRNA
181359	chr5	40503471	40503830	+	0	NA	Intergenic	Intergenic	-176265	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
82701	chr16	20764771	20764930	+	0	NA	intron (NM_202000, intron 1 of 8)	intron (NM_202000, intron 1 of 8)	836	NM_005622	6296		NM_005622	ENSG00000005187	ACSM3	SA|SAH	acyl-CoA synthetase medium chain family member 3	protein-coding
138092	chr2	202237951	202239650	+	0	NA	promoter-TSS (NM_003352)	promoter-TSS (NM_003352)	-203	NM_001371394	7341		NM_003352	ENSG00000116030	SUMO1	DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1	small ubiquitin like modifier 1	protein-coding
38644	chr11	46366121	46366850	+	0	NA	exon (NM_001105540, exon 2 of 32)	exon (NM_001105540, exon 2 of 32)	4879	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
109964	chr19	1388471	1388630	+	0	NA	exon (NM_024407, exon 3 of 8)	exon (NM_024407, exon 3 of 8)	4643	NM_001363602	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
229089	chr9	114370821	114371130	+	0	NA	intron (NM_001317952, intron 3 of 20)	intron (NM_001317952, intron 3 of 20)	17007	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
69252	chr14	92951771	92952530	+	0	NA	intron (NM_014216, intron 8 of 10).2	intron (NM_014216, intron 8 of 10).2	29000	NM_001301690	1113		NM_001275	ENSG00000100604	CHGA	CGA|PHE5|PHES	chromogranin A	protein-coding
11909	chr1	93350801	93351000	+	0	NA	intron (NM_001938, intron 1 of 2)	MER91B|DNA|hAT-Tip100	4993	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
169183	chr3	156691351	156691650	+	0	NA	intron (NM_001184718, intron 2 of 5)	L2b|LINE|L2	14836	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
15901	chr1	151593871	151594830	+	0	NA	Intergenic	Intergenic	-17700	NM_001330723	81609		NM_030918	ENSG00000143376	SNX27	MRT1|MY014	sorting nexin 27	protein-coding
73627	chr15	44599171	44599330	+	0	NA	intron (NM_025137, intron 21 of 39)	intron (NM_025137, intron 21 of 39)	62103	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
83015	chr16	22242001	22242200	+	0	NA	intron (NM_013302, intron 2 of 17).2	AluJr|SINE|Alu	35822	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
170415	chr3	185582421	185583500	+	0	NA	Intergenic	Intergenic	-3335	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
39781	chr11	61946421	61946680	+	0	NA	Intergenic	AluSz|SINE|Alu	-3271	NM_001363592	7439		NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2	bestrophin 1	protein-coding
60511	chr13	41345251	41345830	+	0	NA	intron (NM_024561, intron 9 of 19)	L1MB8|LINE|L1	-33502	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
15372	chr1	150144571	150144930	+	0	NA	exon (NM_001279353, exon 14 of 14)	exon (NM_001279353, exon 14 of 14)	-4684	NM_001304722	51177		NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding
94574	chr17	29638421	29638700	+	0	NA	intron (NM_033389, intron 13 of 14)	(AC)n|Simple_repeat|Simple_repeat	-17137	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
126267	chr2	27137171	27137330	+	0	NA	exon (NM_178553, exon 3 of 3)	exon (NM_178553, exon 3 of 3)	2160	NM_178553	339779		NM_178553	ENSG00000186143	PRR30	C2orf53	proline rich 30	protein-coding
64830	chr14	35117621	35117880	+	0	NA	intron (NM_017917, intron 1 of 12)	AluSp|SINE|Alu	4792	NM_001305155	55012		NM_017917	ENSG00000092020	PPP2R3C	C14orf10|G4-1|G5pr|GDRM|MEGD|SPGF36	protein phosphatase 2 regulatory subunit B''gamma	protein-coding
196160	chr6	42553921	42554900	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-9612	NM_015255	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
77609	chr15	85330721	85332500	+	0	NA	Intergenic	Intergenic	-48986	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
153488	chr22	26428531	26429880	+	0	NA	promoter-TSS (NM_020437)	promoter-TSS (NM_020437)	-55	NM_020437	57168		NM_020437	ENSG00000128203	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
173993	chr4	26312151	26312850	+	0	NA	intron (NM_001374401, intron 1 of 11)	intron (NM_001374401, intron 1 of 11)	-7246	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
170688	chr3	187798451	187799240	+	0	NA	Intergenic	Intergenic	-53377	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
206082	chr7	27184151	27184680	+	0	NA	promoter-TSS (NR_002795)	promoter-TSS (NR_002795)	817	NM_005523	3207		NM_005523	ENSG00000005073	HOXA11	HOX1|HOX1I|RUSAT1	homeobox A11	protein-coding
191097	chr6	3850571	3851000	+	0	NA	exon (NM_012135, exon 2 of 2)	exon (NM_012135, exon 2 of 2)	1412	NM_012135	26240		NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
214044	chr7	143361001	143361200	+	0	NA	intron (NM_001371250, intron 1 of 6)	intron (NM_001371250, intron 1 of 6)	980	NM_014690	9715		NM_014690	ENSG00000159784	FAM131B	-	family with sequence similarity 131 member B	protein-coding
3271	chr1	15156371	15156730	+	0	NA	intron (NR_135082, intron 1 of 2)	intron (NR_135082, intron 1 of 2)	2803	NM_018022	55092		NM_018022	ENSG00000171729	TMEM51	C1orf72	transmembrane protein 51	protein-coding
239262	chrY	13454601	13455130	+	0	NA	intron (NR_047603, intron 4 of 28)	AluSx1|SINE|Alu	-24312	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
113695	chr19	10412291	10413550	+	0	NA	Intergenic	AluSq10|SINE|Alu	-3853	NM_001243121	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
153615	chr22	28034901	28035300	+	0	NA	intron (NM_001145418, intron 12 of 22)	intron (NM_001145418, intron 12 of 22)	-114488	NR_036169	100423034		NR_036169	ENSG00000264073	MIR3199-1	mir-3199-1	microRNA 3199-1	ncRNA
69434	chr14	94132151	94132600	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-2771	NM_032036	83982		NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	interferon alpha inducible protein 27 like 2	protein-coding
68200	chr14	76843951	76844600	+	0	NA	intron (NM_001385108, intron 5 of 11)	AluJb|SINE|Alu	17867	NR_169572	145497		NM_194287	ENSG00000100565	LRRC74A	C14orf166B|LRRC74	leucine rich repeat containing 74A	protein-coding
139551	chr2	224918551	224919880	+	0	NA	intron (NM_001363762, intron 2 of 55)	(GT)n|Simple_repeat|Simple_repeat	27834	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
160318	chr3	27590521	27591050	+	0	NA	Intergenic	Intergenic	-106401	NM_001321103	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
6365	chr1	27853321	27853580	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	19049	NR_002997	677774		NR_002997	ENSG00000252947	SCARNA1	ACA35	small Cajal body-specific RNA 1	ncRNA
129213	chr2	68228221	68228480	+	0	NA	intron (NM_000945, intron 1 of 5)	L1MDa|LINE|L1	24182	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
168090	chr3	138234551	138235000	+	0	NA	intron (NM_001267042, intron 6 of 20)	intron (NM_001267042, intron 6 of 20)	47244	NM_015396	25852		NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
140964	chr2	237922551	237923030	+	0	NA	Intergenic	Intergenic	-44155	NM_001278307	140739		NM_080678	ENSG00000184182	UBE2F	NCE2	ubiquitin conjugating enzyme E2 F (putative)	protein-coding
114247	chr19	11528351	11529600	+	0	NA	promoter-TSS (NM_001243204)	promoter-TSS (NM_001243204)	-110	NM_001243204	51295		NM_016581	ENSG00000130159	ECSIT	SITPEC	ECSIT signaling integrator	protein-coding
157028	chr22	42557521	42558100	+	0	NA	intron (NR_104300, intron 6 of 10)	intron (NR_104300, intron 6 of 10)	3854	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
134371	chr2	136241521	136241780	+	0	NA	Intergenic	Intergenic	-123501	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
129982	chr2	74003901	74004250	+	0	NA	intron (NM_001366022, intron 2 of 10)	intron (NM_001366022, intron 2 of 10)	1383	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
114323	chr19	12052351	12053280	+	0	NA	5' UTR (NM_001080404, exon 1 of 4)	5' UTR (NM_001080404, exon 1 of 4)	146	NM_001080404	729747		NM_001080404	ENSG00000257446	ZNF878	-	zinc finger protein 878	protein-coding
185149	chr5	119322521	119323180	+	0	NA	intron (NM_001286815, intron 2 of 2)	L2b|LINE|L2	-10325	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
39823	chr11	62034971	62035330	+	0	NA	Intergenic	Intergenic	-67516	NM_002032	2495		NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|NBIA9|PIG15|PLIF	ferritin heavy chain 1	protein-coding
158154	chr22	50193851	50194600	+	0	NA	intron (NM_001378762, intron 3 of 9)	intron (NM_001378762, intron 3 of 9)	3638	NM_001320487	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
88117	chr16	81571721	81571980	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	37948	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
103338	chr17	78010821	78011280	+	0	NA	intron (NM_001142640, intron 2 of 21)	intron (NM_001142640, intron 2 of 21)	6813	NM_018996	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
39992	chr11	62625651	62625750	+	0	NA	3' UTR (NM_001278194, exon 23 of 23)	3' UTR (NM_001278194, exon 23 of 23)	-3714	NM_001288723	26229		NM_012200	ENSG00000149541	B3GAT3	GLCATI|JDSCD|glcUAT-I	beta-1,3-glucuronyltransferase 3	protein-coding
10416	chr1	65309451	65310080	+	0	NA	exon (NM_001256864, exon 1 of 19)	exon (NM_001256864, exon 1 of 19)	222	NM_001256864	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
112543	chr19	6532601	6533430	+	0	NA	intron (NM_003811, intron 2 of 2)	intron (NM_003811, intron 2 of 2)	1989	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
215856	chr8	7264151	7264450	+	0	NA	promoter-TSS (NR_027000)	promoter-TSS (NR_027000)	-808	NR_027000	349196		NM_001025473		LINC00965	-	long intergenic non-protein coding RNA 965	ncRNA
193226	chr6	29851351	29851650	+	0	NA	Intergenic	Intergenic	22283	NR_031762	352990		NR_031762	ENSG00000281831	HCP5B	HCP5P10|P5-10|P5.9	HLA complex P5B	ncRNA
223627	chr8	144325151	144325830	+	0	NA	intron (NM_012079, intron 1 of 16)	intron (NM_012079, intron 1 of 16)	1362	NM_012079	8694		NM_012079	ENSG00000185000	DGAT1	ARAT|ARGP1|DGAT|DIAR7	diacylglycerol O-acyltransferase 1	protein-coding
55204	chr12	101759151	101759780	+	0	NA	intron (NM_024312, intron 16 of 20)	intron (NM_024312, intron 16 of 20)	-19993	NM_153694	50511		NM_153694	ENSG00000139351	SYCP3	COR1|RPRGL4|SCP3|SPGF4	synaptonemal complex protein 3	protein-coding
48448	chr12	9731471	9732100	+	0	NA	intron (NM_172004, intron 1 of 1)	intron (NM_172004, intron 1 of 1)	1514	NM_001267701	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
200871	chr6	138815901	138816430	+	0	NA	intron (NM_001077706, intron 4 of 21)	intron (NM_001077706, intron 4 of 21)	20054	NM_001077706	345930		NM_001077706	ENSG00000203734	ECT2L	ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5	epithelial cell transforming 2 like	protein-coding
185092	chr5	119073971	119074130	+	0	NA	intron (NM_001290321, intron 1 of 43)	AluSq2|SINE|Alu	2963	NM_001290322	1657		NM_005509	ENSG00000172869	DMXL1	-	Dmx like 1	protein-coding
236987	chrX	101550351	101551150	+	0	NA	intron (NM_016608, intron 1 of 3)	intron (NM_016608, intron 1 of 3)	203	NM_016608	51309		NM_016608	ENSG00000126947	ARMCX1	ALEX1|GASP7	armadillo repeat containing X-linked 1	protein-coding
226064	chr9	61862121	61863130	+	0	NA	promoter-TSS (NR_144466)	promoter-TSS (NR_144466)	-10	NR_144466	105379807		NR_144466		LOC105379807	-	uncharacterized LOC105379807	ncRNA
106989	chr18	32032521	32032950	+	0	NA	intron (NM_017831, intron 1 of 5)	AluSx|SINE|Alu	13910	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
25059	chr10	3799771	3799930	+	0	NA	Intergenic	L1MA5A|LINE|L1	-14569	NM_001160125	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
21051	chr1	203270601	203271550	+	0	NA	Intergenic	Intergenic	-16077	NR_117097	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
13480	chr1	114583471	114584030	+	0	NA	3' UTR (NM_198459, exon 18 of 18)	3' UTR (NM_198459, exon 18 of 18)	-2135	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
199861	chr6	127792471	127793330	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	62288	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
36101	chr11	3049271	3051030	+	0	NA	intron (NR_165428, intron 1 of 22)	intron (NR_165428, intron 1 of 22)	7273	NM_001751	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
134908	chr2	149585401	149585600	+	0	NA	intron (NM_015702, intron 2 of 7)	MER102a|DNA|hAT-Charlie	-1858	NR_110240	101929231		NR_110240	ENSG00000231969	MMADHC-DT	-	MMADHC divergent transcript	ncRNA
6156	chr1	27400451	27400850	+	0	NA	Intergenic	Intergenic	8028	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
87418	chr16	70679801	70680580	+	0	NA	intron (NM_138383, intron 3 of 14)	CpG-9905	5863	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
114029	chr19	10925171	10926000	+	0	NA	intron (NM_001321439, intron 5 of 9)	intron (NM_001321439, intron 5 of 9)	3054	NM_024029	78992		NM_024029	ENSG00000130733	YIPF2	FinGER2|YIPFbeta3B|Yip5C	Yip1 domain family member 2	protein-coding
28079	chr10	43360271	43360680	+	0	NA	Intergenic	L2|LINE|L2	-11161	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
95290	chr17	35527001	35527350	+	0	NA	intron (NM_001363830, intron 1 of 4)	L1PA7|LINE|L1	10686	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
220118	chr8	94639121	94639580	+	0	NA	non-coding (NR_034034, exon 1 of 1)	non-coding (NR_034034, exon 1 of 1)	117	NR_034034	100288748		NR_034034	ENSG00000261437	LINC02894	-	long intergenic non-protein coding RNA 2894	ncRNA
197708	chr6	85680221	85680480	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1617	NR_003038	387066		NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG	small nucleolar RNA host gene 5	ncRNA
70338	chr14	101847521	101847880	+	0	NA	intron (NM_001352916, intron 2 of 13)	AluSc|SINE|Alu	37837	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
2909	chr1	11682571	11682730	+	0	NA	intron (NM_001127325, intron 1 of 8)	MER5A|DNA|hAT-Charlie	-1502	NM_006341	10459		NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	mitotic arrest deficient 2 like 2	protein-coding
134658	chr2	144456501	144457130	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-62799	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
146676	chr20	50516021	50516830	+	0	NA	intron (NM_001278618, intron 1 of 8)	MIR3|SINE|MIR	6042	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138176	chr2	202645471	202645630	+	0	NA	intron (NM_173511, intron 1 of 7)	AluYe5|SINE|Alu	10581	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
36808	chr11	9615421	9615680	+	0	NA	Intergenic	Intergenic	40863	NM_001143976	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
52038	chr12	54007001	54007600	+	0	NA	Intergenic	Intergenic	-1685	NM_022658	3224		NM_022658	ENSG00000037965	HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
205054	chr7	6591651	6591950	+	0	NA	exon (NM_024067, exon 2 of 6)	exon (NM_024067, exon 2 of 6)	1779	NM_001303039	79034		NM_024067	ENSG00000146576	INTS15	C7orf26	integrator complex subunit 15	protein-coding
238670	chrX	154030451	154031030	+	0	NA	exon (NM_001316337, exon 5 of 5)	exon (NM_001316337, exon 5 of 5)	-10751	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
125500	chr2	12675751	12675880	+	0	NA	Intergenic	Intergenic	-41057	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
95265	chr17	35492921	35493180	+	0	NA	intron (NM_001363830, intron 2 of 4)	intron (NM_001363830, intron 2 of 4)	-5311	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
167897	chr3	136149701	136149900	+	0	NA	3' UTR (NM_018133, exon 2 of 2)	3' UTR (NM_018133, exon 2 of 2)	44668	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
112270	chr19	5803671	5804460	+	0	NA	Intergenic	CpG	-1002	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
20030	chr1	185312601	185312900	+	0	NA	intron (NM_006469, intron 1 of 14)	intron (NM_006469, intron 1 of 14)	4493	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
47147	chr12	758051	758650	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	5427	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
32543	chr10	103197021	103197280	+	0	NA	Intergenic	Intergenic	-3844	NM_001351197	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
19300	chr1	172906771	172907530	+	0	NA	Intergenic	Intergenic	143791	NM_005092	8995		NM_005092	ENSG00000120337	TNFSF18	AITRL|GITRL|TL6|TNLG2A|hGITRL	TNF superfamily member 18	protein-coding
172419	chr4	1851321	1852030	+	0	NA	intron (NM_012318, intron 1 of 13)	intron (NM_012318, intron 1 of 13)	4481	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
144473	chr20	35607551	35607880	+	0	NA	promoter-TSS (NR_119376)	promoter-TSS (NR_119376)	-153	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
167436	chr3	129052471	129052630	+	0	NA	Intergenic	AluJo|SINE|Alu	-8229	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
145075	chr20	38635971	38636130	+	0	NA	intron (NM_001164431, intron 6 of 14)	MLT1H|LTR|ERVL-MaLR	34241	NM_001164431	343578		NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
105257	chr17	82439151	82439650	+	0	NA	intron (NM_001369487, intron 9 of 14)	intron (NM_001369487, intron 9 of 14)	10326	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
235259	chrX	41705671	41706230	+	0	NA	intron (NM_001126055, intron 5 of 24)	intron (NM_001126055, intron 5 of 24)	16977	NM_001097579	2857		NM_005300	ENSG00000171659	GPR34	LPS1|LYPSR1	G protein-coupled receptor 34	protein-coding
143786	chr20	32449651	32449950	+	0	NA	intron (NM_080616, intron 7 of 7)	intron (NM_080616, intron 7 of 7)	33690	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
57806	chr12	123122551	123123050	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	-17284	NM_001384660	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
199955	chr6	127923001	127923680	+	0	NA	Intergenic	MLT1G1-int|LTR|ERVL-MaLR	-4709	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
842	chr1	1598371	1598700	+	0	NA	promoter-TSS (NR_147951)	promoter-TSS (NR_147951)	-898	NR_147951	105378586		NR_147951		LOC105378586	-	uncharacterized LOC105378586	ncRNA
162842	chr3	49295221	49296330	+	0	NA	intron (NM_199443, intron 12 of 20)	intron (NM_199443, intron 12 of 20)	-18543	NM_198562	375341		NM_198562	ENSG00000188315	C3orf62	MAPS	chromosome 3 open reading frame 62	protein-coding
72260	chr15	30621321	30621930	+	0	NA	intron (NR_157594, intron 1 of 4)	intron (NR_157594, intron 1 of 4)	4153	NR_157596	102725021		NR_157593		ARHGAP11B-DT	-	ARHGAP11B divergent transcript	ncRNA
73974	chr15	51905621	51906480	+	0	NA	intron (NM_014547, intron 9 of 9)	intron (NM_014547, intron 9 of 9)	18070	NR_109775	100422556		NR_109775		LOC100422556	-	LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene	pseudo
81607	chr16	10521701	10521900	+	0	NA	intron (NR_149081, intron 1 of 1)	intron (NR_149081, intron 1 of 1)	6398	NR_149081	106144584		NR_149081	ENSG00000260468	LINC01290	-	long intergenic non-protein coding RNA 1290	ncRNA
130346	chr2	85003751	85004450	+	0	NA	intron (NM_020122, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	32939	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
214922	chr7	151517021	151517300	+	0	NA	intron (NM_005614, intron 1 of 7)	AluSq2|SINE|Alu	2735	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
75343	chr15	65400621	65401380	+	0	NA	intron (NM_020962, intron 4 of 19)	MIRc|SINE|MIR	21947	NM_020962	57722		NM_020962	ENSG00000103742	IGDCC4	DDM36|NOPE	immunoglobulin superfamily DCC subclass member 4	protein-coding
229383	chr9	121123671	121124230	+	0	NA	exon (NM_001369895, exon 12 of 32)	exon (NM_001369895, exon 12 of 32)	2180	NM_001330762	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
77063	chr15	78882221	78882530	+	0	NA	intron (NM_001265604, intron 3 of 11)	intron (NM_001265604, intron 3 of 11)	9386	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
204846	chr7	5779551	5780050	+	0	NA	intron (NM_001377156, intron 1 of 17)	AluSz|SINE|Alu	1863	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
67267	chr14	69148401	69148600	+	0	NA	intron (NM_001284208, intron 1 of 6)	AluSg|SINE|Alu	4099	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
37430	chr11	17383821	17384680	+	0	NA	TTS (NM_001166290)	TTS (NM_001166290)	4409	NM_000525	3767		NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|PNDM2|TNDM3	potassium inwardly rectifying channel subfamily J member 11	protein-coding
175817	chr4	77859471	77859950	+	0	NA	Intergenic	Intergenic	-3120	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
106548	chr18	21605871	21606430	+	0	NA	Intergenic	Intergenic	-5446	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
199605	chr6	119313861	119315020	+	0	NA	intron (NM_005907, intron 2 of 12)	MIRb|SINE|MIR	35321	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
72295	chr15	31013921	31014330	+	0	NA	intron (NM_001252024, intron 27 of 27).3	L1M4|LINE|L1	-22497	NM_017762	54893		NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
222893	chr8	142785871	142786130	+	0	NA	intron (NM_003695, intron 1 of 2)	intron (NM_003695, intron 1 of 2)	539	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
24930	chr10	1132701	1132900	+	0	NA	TTS (NM_014023)	TTS (NM_014023)	-26968	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
18352	chr1	161219951	161220250	+	0	NA	TTS (NM_004106)	TTS (NM_004106)	3528	NM_001643	336		NM_001643	ENSG00000158874	APOA2	Apo-AII|ApoA-II|apoAII	apolipoprotein A2	protein-coding
198394	chr6	105675771	105676130	+	0	NA	Intergenic	Intergenic	-272868	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
101770	chr17	73090751	73091050	+	0	NA	intron (NM_001159770, intron 1 of 9)	intron (NM_001159770, intron 1 of 9)	1788	NM_001352691	201266		NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP-11|ZIP11	solute carrier family 39 member 11	protein-coding
12413	chr1	101338771	101339230	+	0	NA	intron (NR_126402, intron 1 of 4)	LTR8|LTR|ERV1	15163	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
56662	chr12	119918571	119918730	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	-41330	NM_007174	11113		NM_007174	ENSG00000122966	CIT	CITK|CRIK|MCPH17|STK21	citron rho-interacting serine/threonine kinase	protein-coding
222771	chr8	141808521	141808600	+	0	NA	Intergenic	Intergenic	-22247	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
208772	chr7	73556551	73558180	+	0	NA	promoter-TSS (NR_036682)	promoter-TSS (NR_036682)	-129	NR_036682	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
138568	chr2	207713371	207713530	+	0	NA	intron (NM_001330218, intron 1 of 9)	intron (NM_001330218, intron 1 of 9)	1810	NM_001330218	151195		NM_152523	ENSG00000163249	CCNYL1	-	cyclin Y like 1	protein-coding
144860	chr20	36900651	36900750	+	0	NA	intron (NM_001363733, intron 13 of 15)	AluSc8|SINE|Alu	24562	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
123368	chr19	53895951	53896250	+	0	NA	intron (NM_001316329, intron 9 of 18)	intron (NM_001316329, intron 9 of 18)	-13178	NM_001384801	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
180652	chr5	17522551	17522850	+	0	NA	Intergenic	Intergenic	-30624	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
163690	chr3	52252701	52254400	+	0	NA	TTS (NM_025222)	TTS (NM_025222)	7383	NM_001122870	132160		NM_144641	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein-coding
25017	chr10	3473321	3473680	+	0	NA	intron (NR_155743, intron 3 of 4)	intron (NR_155743, intron 3 of 4)	29338	NR_155743	101927880		NR_155743	ENSG00000233321	LINC02669	-	long intergenic non-protein coding RNA 2669	ncRNA
33700	chr10	120897471	120897630	+	0	NA	intron (NM_018117, intron 19 of 28)	L1MC4a|LINE|L1	46188	NM_018117	55717		NM_018117	ENSG00000120008	WDR11	BRWD2|DR11|HH14|SRI1|WDR15	WD repeat domain 11	protein-coding
141205	chr2	239363921	239364480	+	0	NA	intron (NM_001378417, intron 1 of 26)	L1ME3A|LINE|L1	-12396	NR_039948	100616360		NR_039948	ENSG00000264292	MIR2467	mir-2467	microRNA 2467	ncRNA
157539	chr22	45435471	45436150	+	0	NA	Intergenic	Intergenic	22117	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
193799	chr6	31428601	31428800	+	0	NA	Intergenic	Intergenic	-12967	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
46946	chr11	134408451	134409150	+	0	NA	intron (NM_054025, intron 1 of 5)	intron (NM_054025, intron 1 of 5)	3118	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
206034	chr7	27031401	27032080	+	0	NA	Intergenic	MIR|SINE|MIR	64260	NM_005522	3198		NM_005522	ENSG00000105991	HOXA1	BSAS|HOX1|HOX1F	homeobox A1	protein-coding
180902	chr5	34186871	34187450	+	0	NA	intron (NR_146599, intron 2 of 11)	THE1B|LTR|ERVL-MaLR	-2421	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
71458	chr14	105859201	105860850	+	0	NA	promoter-TSS (NR_130466)	promoter-TSS (NR_130466)	-472	NR_130466	100616422		NR_130466	ENSG00000264781	MIR4537	-	microRNA 4537	ncRNA
187865	chr5	148179351	148179530	+	0	NA	Intergenic	Intergenic	10894	NM_001001325	408187		NM_001001325	ENSG00000196800	SPINK14	SPINK5L2	serine peptidase inhibitor Kazal type 14 (putative)	protein-coding
206301	chr7	30148801	30149580	+	0	NA	intron (NM_152793, intron 2 of 2)	intron (NM_152793, intron 2 of 2)	14204	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
154861	chr22	37128101	37128630	+	0	NA	exon (NM_001346223, exon 10 of 10)	exon (NM_001346223, exon 10 of 10)	-18652	NM_001374504	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
161124	chr3	38376351	38376650	+	0	NA	intron (NR_146068, intron 10 of 16)	intron (NR_146068, intron 10 of 16)	29715	NM_001349178	9942		NM_005108	ENSG00000093217	XYLB	-	xylulokinase	protein-coding
88159	chr16	81696421	81696680	+	0	NA	intron (NM_030629, intron 13 of 20)	intron (NM_030629, intron 13 of 20)	31196	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
235611	chrX	47936451	47936750	+	0	NA	Intergenic	LTR19B|LTR|ERV1	67389	NM_001007088	7569		NM_006962	ENSG00000147118	ZNF182	HHZ150|KOX14|ZNF21|Zfp182	zinc finger protein 182	protein-coding
228027	chr9	95882771	95883350	+	0	NA	intron (NM_001375291, intron 2 of 18)	LOR1b|LTR|ERV1	-7083	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
92764	chr17	15526501	15526800	+	0	NA	intron (NM_145301, intron 5 of 5)	intron (NM_145301, intron 5 of 5)	36833	NM_001204478	100533496		NM_001204478	ENSG00000259024	TVP23C-CDRT4	FAM18B2|FAM18B2-CDRT4|TVP23C	TVP23C-CDRT4 readthrough	protein-coding
32645	chr10	103747221	103747480	+	0	NA	intron (NR_038940, intron 1 of 2)	intron (NR_038940, intron 1 of 2)	571	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
184163	chr5	95727951	95728050	+	0	NA	intron (NM_001349303, intron 1 of 8)	MLT1J2|LTR|ERVL-MaLR	-3336	NM_014899	22836		NM_014899	ENSG00000164292	RHOBTB3	-	Rho related BTB domain containing 3	protein-coding
82537	chr16	18381351	18381850	+	0	NA	non-coding (NR_146331, exon 22 of 38)	non-coding (NR_146331, exon 22 of 38)	-2190	NR_106828	102465461		NR_106828	ENSG00000278265	MIR6770-1	hsa-mir-6770-1	microRNA 6770-1	ncRNA
154605	chr22	36296021	36297230	+	0	NA	intron (NM_002473, intron 25 of 40)	intron (NM_002473, intron 25 of 40)	-9718	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
105781	chr18	2843201	2843600	+	0	NA	Intergenic	Intergenic	-3606	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
151085	chr21	44824921	44825530	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-7096	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
121349	chr19	46820171	46820330	+	0	NA	Intergenic	L2|LINE|L2	10454	NR_024258	100170220		NR_024258		SNAR-E	-	small NF90 (ILF3) associated RNA E	snRNA
236239	chrX	65733301	65733500	+	0	NA	intron (NM_002444, intron 7 of 12)	intron (NM_002444, intron 7 of 12)	65746	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
106237	chr18	11959551	11959650	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-21907	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
36924	chr11	10807471	10808100	+	0	NA	5' UTR (NM_001172705, exon 1 of 22)	5' UTR (NM_001172705, exon 1 of 22)	211	NM_001172705	1982		NM_001418	ENSG00000110321	EIF4G2	AAG1|DAP5|NAT1|P97	eukaryotic translation initiation factor 4 gamma 2	protein-coding
129934	chr2	73748851	73748950	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-11494	NM_001330387	51002		NM_016058	ENSG00000144034	TPRKB	CGI-121|CGI121|GAMOS5	TP53RK binding protein	protein-coding
131672	chr2	97699901	97700830	+	0	NA	intron (NM_001351368, intron 6 of 7)	intron (NM_001351368, intron 6 of 7)	-13211	NM_001079	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
187601	chr5	142926601	142927250	+	0	NA	intron (NR_146198, intron 10 of 22)	MIRb|SINE|MIR	-58015	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
160279	chr3	25856771	25857260	+	0	NA	Intergenic	Intergenic	16680	NR_034055	285326		NR_034055	ENSG00000230891	LINC00692	-	long intergenic non-protein coding RNA 692	ncRNA
128224	chr2	54084751	54084850	+	0	NA	intron (NM_001320586, intron 4 of 6)	MamRep1527|LTR|LTR	-30815	NM_001320590	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
25834	chr10	11216351	11217180	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	51735	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
9454	chr1	50419501	50419700	+	0	NA	exon (NM_032110, exon 3 of 3)	exon (NM_032110, exon 3 of 3)	3843	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
142422	chr20	3899451	3900500	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluY|SINE|Alu	10159	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
154955	chr22	37259301	37259930	+	0	NA	Intergenic	CpG	-15346	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
118095	chr19	34401001	34401200	+	0	NA	3' UTR (NM_001329911, exon 18 of 18)	3' UTR (NM_001329911, exon 18 of 18)	-3298	NM_001353433	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
158015	chr22	49906571	49907430	+	0	NA	intron (NM_024105, intron 7 of 9)	intron (NM_024105, intron 7 of 9)	11438	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
163946	chr3	52838401	52839330	+	0	NA	3' UTR (NM_198563, exon 8 of 8)	3' UTR (NM_198563, exon 8 of 8)	-3846	NM_205853	389125		NM_205853	ENSG00000272573	MUSTN1	MUSTANG	musculoskeletal, embryonic nuclear protein 1	protein-coding
232921	chr9	136880571	136880950	+	0	NA	Intergenic	Intergenic	-5756	NM_021138	7186		NM_021138	ENSG00000127191	TRAF2	MGC:45012|RNF117|TRAP|TRAP3	TNF receptor associated factor 2	protein-coding
41425	chr11	66057571	66058130	+	0	NA	intron (NM_006842, intron 7 of 21)	AluSp|SINE|Alu	4706	NR_145738	109616986		NR_145738		SNORD13F	-	small nucleolar RNA, C/D box 13F	snoRNA
49751	chr12	31734871	31735030	+	0	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-5776	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
41373	chr11	65981401	65981600	+	0	NA	Intergenic	Intergenic	19766	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
119631	chr19	40795401	40795600	+	0	NA	intron (NR_037791, intron 7 of 11)	AluSx1|SINE|Alu	-3691	NM_080732	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
212973	chr7	130972771	130973000	+	0	NA	intron (NR_109851, intron 4 of 5)	L1PA5|LINE|L1	59421	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
239360	chrY	19816171	19816330	+	0	NA	Intergenic	Intergenic	-71311	NM_001146705	8284		NM_004653	ENSG00000012817	KDM5D	HY|HYA|JARID1D|SMCY	lysine demethylase 5D	protein-coding
187951	chr5	149298021	149298480	+	0	NA	intron (NM_001146337, intron 1 of 17)	MIR|SINE|MIR	26391	NM_001146337	134265		NM_152406	ENSG00000157510	AFAP1L1	-	actin filament associated protein 1 like 1	protein-coding
75794	chr15	68824971	68825330	+	0	NA	Intergenic	AluYf1|SINE|Alu	-4255	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
129078	chr2	65103501	65103700	+	0	NA	intron (NM_004161, intron 2 of 5)	Charlie1a|DNA|hAT-Charlie	26506	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
65934	chr14	55354521	55355030	+	0	NA	Intergenic	Intergenic	57055	NM_014924	22863		NM_014924	ENSG00000126775	ATG14	ATG14L|BARKOR|KIAA0831	autophagy related 14	protein-coding
53640	chr12	68222701	68223500	+	0	NA	intron (NM_018402, intron 3 of 4)	intron (NM_018402, intron 3 of 4)	2710	NM_018402	55801		NM_018402	ENSG00000111536	IL26	AK155|IL-26	interleukin 26	protein-coding
57366	chr12	121786911	121787500	+	0	NA	intron (NM_019034, intron 2 of 4)	intron (NM_019034, intron 2 of 4)	6483	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
177071	chr4	108047321	108047580	+	0	NA	TTS (NM_001166119)	TTS (NM_001166119)	42786	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
229910	chr9	126612551	126613080	+	0	NA	Intergenic	CpG	-1113	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
36677	chr11	8343321	8343600	+	0	NA	Intergenic	Intergenic	-74673	NM_001270428	4004		NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
94713	chr17	30711171	30711350	+	0	NA	intron (NR_144394, intron 1 of 8)	intron (NR_144394, intron 1 of 8)	1652	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
200793	chr6	137890201	137891150	+	0	NA	Intergenic	L1PA7|LINE|L1	-22442	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
19860	chr1	183228051	183228150	+	0	NA	intron (NM_005562, intron 10 of 22)	intron (NM_005562, intron 10 of 22)	41836	NM_005562	3918		NM_005562	ENSG00000058085	LAMC2	B2T|BM600|CSF|EBR2|EBR2A|JEB3A|JEB3B|LAMB2T|LAMNB2	laminin subunit gamma 2	protein-coding
205115	chr7	6854901	6856330	+	0	NA	Intergenic	CpG	-29340	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
80221	chr16	2178351	2180600	+	0	NA	intron (NM_020764, intron 18 of 19)	CpG	17130	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
30546	chr10	79640901	79641100	+	0	NA	intron (NR_134315, intron 1 of 3)	MER57B1|LTR|ERV1	22185	NR_134315	105378385		NR_134315	ENSG00000226676	LINC02679	-	long intergenic non-protein coding RNA 2679	ncRNA
137291	chr2	195559001	195560060	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-97428	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
97232	chr17	42832621	42834080	+	0	NA	promoter-TSS (NM_001267045)	promoter-TSS (NM_001267045)	-47	NM_005789	10197		NM_005789	ENSG00000131467	PSME3	HEL-S-283|Ki|PA28-gamma|PA28G|PA28gamma|REG-GAMMA	proteasome activator subunit 3	protein-coding
216497	chr8	20236751	20236850	+	0	NA	Intergenic	Intergenic	36735	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
121043	chr19	45819321	45819580	+	0	NA	intron (NM_004819, intron 22 of 26)	intron (NM_004819, intron 22 of 26)	-4142	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
162275	chr3	47346151	47346450	+	0	NA	3' UTR (NM_025010, exon 10 of 10)	3' UTR (NM_025010, exon 10 of 10)	-34721	NM_001304482	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
37331	chr11	14829351	14829850	+	0	NA	intron (NM_001363569, intron 7 of 15)	L1PREC2|LINE|L1	62071	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
96598	chr17	40535771	40536130	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	24444	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
97454	chr17	43675651	43675950	+	0	NA	Intergenic	Intergenic	-13878	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
191746	chr6	13794971	13795600	+	0	NA	intron (NM_001031713, intron 6 of 8)	intron (NM_001031713, intron 6 of 8)	19275	NM_001031713	63933		NM_022102	ENSG00000050393	MCUR1	C6orf79|CCDC90A|FMP32	mitochondrial calcium uniporter regulator 1	protein-coding
7394	chr1	32924601	32925130	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	-23476	NM_001329723	113452		NM_033504	ENSG00000121900	TMEM54	BCLP|CAC-1|CAC1	transmembrane protein 54	protein-coding
4179	chr1	19424871	19425230	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	59245	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
19401	chr1	174158801	174160400	+	0	NA	promoter-TSS (NM_001366448)	promoter-TSS (NM_001366448)	80	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
87285	chr16	70028371	70028680	+	0	NA	intron (NR_003610, intron 8 of 25)	AluSx|SINE|Alu	-1821	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
19895	chr1	183842501	183842800	+	0	NA	intron (NM_015149, intron 3 of 18)	intron (NM_015149, intron 3 of 18)	37530	NM_001297671	23179		NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding
198858	chr6	109378921	109379780	+	0	NA	intron (NM_001142401, intron 2 of 4)	FLAM_A|SINE|Alu	2389	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
55046	chr12	96400101	96400900	+	0	NA	promoter-TSS (NM_001170464)	promoter-TSS (NM_001170464)	-61	NM_001170464	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
14464	chr1	144463201	144463600	+	0	NA	Intergenic	AluSx|SINE|Alu	-1731	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
54079	chr12	76048121	76048380	+	0	NA	TTS (NM_001307924)	TTS (NM_001307924)	-16474	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
227820	chr9	93315051	93315550	+	0	NA	intron (NM_001282394, intron 28 of 29)	HSMAR2|DNA|TcMar-Mariner	31003	NR_166069	445577		NM_001098808		FAM120A2P	C9orf129|bA165J3.3	family with sequence similarity 120A2, pseudogene	pseudo
8635	chr1	41720921	41721700	+	0	NA	intron (NM_024503, intron 1 of 8)	AluSq2|SINE|Alu	197612	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
138596	chr2	208101371	208101980	+	0	NA	Intergenic	AluSx3|SINE|Alu	-17454	NR_038437	100507443		NR_038437		LOC100507443	-	uncharacterized LOC100507443	ncRNA
187739	chr5	143592721	143592980	+	0	NA	Intergenic	Intergenic	-87010	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
123396	chr19	53926021	53926880	+	0	NA	intron (NM_001384801, intron 4 of 4)	L2a|LINE|L2	17172	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
195424	chr6	36924201	36924450	+	0	NA	3' UTR (NM_001286637, exon 9 of 9)	3' UTR (NM_001286637, exon 9 of 9)	-23938	NM_001199159	221476		NM_153370	ENSG00000164530	PI16	CD364|CRISP9|MSMBBP|PSPBP	peptidase inhibitor 16	protein-coding
126425	chr2	27766951	27767250	+	0	NA	Intergenic	AluSz|SINE|Alu	-4617	NM_145330	9553		NM_004891	ENSG00000243147	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L|bL33m	mitochondrial ribosomal protein L33	protein-coding
26433	chr10	17240851	17241150	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11015	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
15124	chr1	148677221	148677630	+	0	NA	intron (NM_001364007, intron 1 of 4)	intron (NM_001364007, intron 1 of 4)	2321	NM_001364007	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
84146	chr16	29740171	29740800	+	0	NA	Intergenic	LTR5B|LTR|ERVK	5505	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
200694	chr6	137309171	137309580	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-89990	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
58930	chr13	19760421	19761080	+	0	NA	intron (NM_001354909, intron 2 of 8)	AluSx3|SINE|Alu	22195	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
81171	chr16	4460351	4460450	+	0	NA	Intergenic	Intergenic	14225	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
85179	chr16	46832571	46832730	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-1470	NR_145834	388272		NM_001001436	ENSG00000155330	C16orf87	-	chromosome 16 open reading frame 87	protein-coding
27236	chr10	29479731	29479930	+	0	NA	intron (NM_021738, intron 29 of 37)	intron (NM_021738, intron 29 of 37)	65267	NR_030335	693189		NR_030335	ENSG00000207612	MIR604	MIRN604|hsa-mir-604	microRNA 604	ncRNA
190544	chr5	180720571	180720800	+	0	NA	Intergenic	Intergenic	19373	NM_001001657	134083		NM_001001657	ENSG00000174339	OR2Y1	OR5-2	olfactory receptor family 2 subfamily Y member 1	protein-coding
103523	chr17	78484251	78485550	+	0	NA	promoter-TSS (NR_102401)	promoter-TSS (NR_102401)	-10	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
216836	chr8	22591301	22592030	+	0	NA	exon (NM_001368120, exon 8 of 9)	exon (NM_001368120, exon 8 of 9)	-7934	NM_001013842	541565		NM_173686	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
215364	chr7	157395071	157395230	+	0	NA	intron (NM_058246, intron 8 of 9)	intron (NM_058246, intron 8 of 9)	58146	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
161999	chr3	46375551	46376130	+	0	NA	3' UTR (NM_000579, exon 3 of 3)	3' UTR (NM_000579, exon 3 of 3)	5698	NM_001100168	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
52705	chr12	56571551	56572050	+	0	NA	exon (NM_002898, exon 5 of 14)	exon (NM_002898, exon 5 of 14)	49980	NM_002898	5939		NM_002898	ENSG00000076067	RBMS2	SCR3	RNA binding motif single stranded interacting protein 2	protein-coding
119709	chr19	41135301	41136230	+	0	NA	Intergenic	CpG	21333	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
35492	chr11	1518101	1518300	+	0	NA	Intergenic	Intergenic	-31421	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
40524	chr11	64290021	64290530	+	0	NA	TTS (NM_001378077)	TTS (NM_001378077)	-1027	NR_133660	50801		NM_016611	ENSG00000182450	KCNK4	FHEIG|K2p4.1|TRAAK|TRAAK1	potassium two pore domain channel subfamily K member 4	protein-coding
114538	chr19	12846951	12848180	+	0	NA	intron (NM_014975, intron 5 of 25)	CpG	-4695	NR_106852	102466196		NR_106852	ENSG00000276181	MIR6794	hsa-mir-6794	microRNA 6794	ncRNA
221324	chr8	123071021	123071280	+	0	NA	Intergenic	Intergenic	-1557	NM_001363152	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
106010	chr18	7958351	7959150	+	0	NA	intron (NM_001378146, intron 3 of 29)	intron (NM_001378146, intron 3 of 29)	11875	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
216511	chr8	20277871	20278030	+	0	NA	intron (NR_047509, intron 1 of 2)	L2b|LINE|L2	2177	NR_047509	100874051		NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA
133918	chr2	130346151	130346900	+	0	NA	3' UTR (NM_001320311, exon 9 of 9)	3' UTR (NM_001320311, exon 9 of 9)	3255	NM_001371731	92856		NM_033416	ENSG00000136718	IMP4	BXDC4	IMP U3 small nucleolar ribonucleoprotein 4	protein-coding
13381	chr1	113930101	113931100	+	0	NA	intron (NM_001369806, intron 1 of 15)	intron (NM_001369806, intron 1 of 15)	756	NM_001369807	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
112372	chr19	6018851	6019100	+	0	NA	intron (NM_134433, intron 5 of 16)	LTR53|LTR|ERVL	40572	NR_046376	100128568		NR_046376	ENSG00000266983	RANBP3-DT	-	RANBP3 divergent transcript	ncRNA
51733	chr12	53224181	53225000	+	0	NA	intron (NM_001243730, intron 2 of 8)	intron (NM_001243730, intron 2 of 8)	-4228	NM_001243732	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
206978	chr7	38315151	38315730	+	0	NA	Intergenic	Intergenic	-26137	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
7863	chr1	36379301	36379500	+	0	NA	intron (NM_032017, intron 1 of 11)	AluY|SINE|Alu	6524	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
233070	chr9	137084271	137084430	+	0	NA	TTS (NR_027447)	TTS (NR_027447)	2467	NR_027447	100289341		NR_027447	ENSG00000268996	MAN1B1-DT	MAN1B1-AS1	MAN1B1 divergent transcript	ncRNA
50979	chr12	49559101	49559530	+	0	NA	TTS (NM_012284)	TTS (NM_012284)	7124	NM_001012300	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
228249	chr9	97987451	97988230	+	0	NA	intron (NM_006401, intron 1 of 6)	intron (NM_006401, intron 1 of 6)	4499	NM_006401	10541		NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding
81878	chr16	11675001	11675980	+	0	NA	intron (NM_003498, intron 1 of 1)	AluSz|SINE|Alu	7035	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
20687	chr1	200532151	200532450	+	0	NA	Intergenic	Intergenic	86538	NM_001305792	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
69506	chr14	95620771	95620930	+	0	NA	Intergenic	Intergenic	-31247	NR_028288	27004		NM_012468		TCL6	TNG1|TNG2	T cell leukemia/lymphoma 6	ncRNA
36368	chr11	3950171	3950330	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluSz|SINE|Alu	94188	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
140184	chr2	231666351	231667350	+	0	NA	Intergenic	Intergenic	-41675	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
45505	chr11	118661901	118662300	+	0	NA	intron (NM_007180, intron 4 of 14)	MIRb|SINE|MIR	17550	NM_007180	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
231090	chr9	129796401	129796680	+	0	NA	Intergenic	Intergenic	-6603	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
163979	chr3	53054771	53055130	+	0	NA	Intergenic	AluSz|SINE|Alu	-8877	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
53011	chr12	57526421	57527630	+	0	NA	exon (NM_052897, exon 7 of 13)	exon (NM_052897, exon 7 of 13)	4201	NM_052897	114785		NM_052897	ENSG00000166987	MBD6	-	methyl-CpG binding domain protein 6	protein-coding
206586	chr7	35710271	35710430	+	0	NA	Intergenic	AluJb|SINE|Alu	-6087	NR_108083	100506725		NR_108082	ENSG00000227544	LINC03013	-	long intergenic non-protein coding RNA 3013	ncRNA
129162	chr2	68031521	68031780	+	0	NA	Intergenic	Intergenic	31354	NM_173177	10438		NM_006333	ENSG00000197223	C1D	LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
166917	chr3	125022251	125023250	+	0	NA	intron (NM_020733, intron 3 of 16)	intron (NM_020733, intron 3 of 16)	33247	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
152865	chr22	22357171	22357610	+	0	NA	Intergenic	Intergenic	59292	NR_027293	96610		NM_080926		BMS1P20	IGL|IGLV|IGLV1	BMS1 pseudogene 20	pseudo
10498	chr1	66446371	66446750	+	0	NA	Intergenic	Intergenic	-86801	NM_001376535	84251		NM_032291	ENSG00000118473	SGIP1	-	SH3GL interacting endocytic adaptor 1	protein-coding
182539	chr5	65680071	65680430	+	0	NA	intron (NM_019072, intron 8 of 10)	L1PA11|LINE|L1	41859	NM_019072	54557		NM_019072	ENSG00000197860	SGTB	SGT2	small glutamine rich tetratricopeptide repeat co-chaperone beta	protein-coding
104888	chr17	81882851	81883730	+	0	NA	Intergenic	AluJo|SINE|Alu	-7500	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
992	chr1	1839921	1840580	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSx3|SINE|Alu	50837	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
224775	chr9	22009201	22009900	+	0	NA	promoter-TSS (NM_004936)	promoter-TSS (NM_004936)	-237	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
230388	chr9	128097071	128097230	+	0	NA	intron (NM_001265614, intron 1 of 10)	intron (NM_001265614, intron 1 of 10)	-1332	NM_052901	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
85377	chr16	50277571	50278530	+	0	NA	intron (NM_001114, intron 1 of 25)	AluSz6|SINE|Alu	11499	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
160246	chr3	23981271	23981430	+	0	NA	TTS (NM_001145425)	TTS (NM_001145425)	-34788	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
115133	chr19	14379921	14381700	+	0	NA	promoter-TSS (NM_078481)	promoter-TSS (NM_078481)	-334	NM_001784	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
74550	chr15	60519971	60520230	+	0	NA	non-coding (NR_120339, exon 4 of 6)	non-coding (NR_120339, exon 4 of 6)	40922	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
121376	chr19	46863921	46864180	+	0	NA	intron (NM_004491, intron 1 of 6)	intron (NM_004491, intron 1 of 6)	3053	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
10105	chr1	58987421	58987850	+	0	NA	Intergenic	L2c|LINE|L2	-32841	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
150735	chr21	43753971	43754130	+	0	NA	intron (NM_001331030, intron 8 of 9)	intron (NM_001331030, intron 8 of 9)	12564	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
106169	chr18	9966021	9966280	+	0	NA	Intergenic	MER44D|DNA|TcMar-Tigger	52134	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
236167	chrX	65034451	65035550	+	0	NA	promoter-TSS (NM_001243804)	promoter-TSS (NM_001243804)	-259	NM_001178032	55906		NM_018684	ENSG00000126970	ZC4H2	HCA127|KIAA1166|MCS|MRXS4|WRWF|WRWFFR|WWS	zinc finger C4H2-type containing	protein-coding
169963	chr3	179194521	179195180	+	0	NA	intron (NM_006218, intron 1 of 20)	L2c|LINE|L2	46493	NM_006218	5290		NM_006218	ENSG00000121879	PIK3CA	CCM4|CLAPO|CLOVE|CWS5|HMH|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding
12849	chr1	110069771	110069930	+	0	NA	intron (NM_006492, intron 1 of 3)	CpG	822	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
234925	chrX	37754751	37755530	+	0	NA	Intergenic	L2c|LINE|L2	-24919	NM_000397	1536		NM_000397	ENSG00000165168	CYBB	AMCBX2|CGD|CGDX|GP91-1|GP91-PHOX|GP91PHOX|IMD34|NOX2|p91-PHOX	cytochrome b-245 beta chain	protein-coding
109184	chr19	360671	361230	+	0	NA	TTS (NM_199202)	TTS (NM_199202)	15076	NM_199202	51298		NM_016585	ENSG00000105549	SPMAP2	CT56|THEG|THEG1	sperm microtubule associated protein 2	protein-coding
218489	chr8	51961701	51962750	+	0	NA	Intergenic	L2a|LINE|L2	-63039	NM_001286782	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
78294	chr15	90889101	90890400	+	0	NA	intron (NM_001143783, intron 5 of 16)	intron (NM_001143783, intron 5 of 16)	4704	NM_001143784	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
116206	chr19	17495101	17495300	+	0	NA	intron (NR_147835, intron 1 of 2)	AluSq2|SINE|Alu	-16449	NM_012088	25796		NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
185596	chr5	131408451	131408980	+	0	NA	Intergenic	AluJo|SINE|Alu	144662	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
152951	chr22	22884921	22885200	+	0	NA	Intergenic	Intergenic	-1207	NR_049835	100847006		NR_049835	ENSG00000264824	MIR5571	-	microRNA 5571	ncRNA
142600	chr20	5581671	5582030	+	0	NA	intron (NM_019593, intron 6 of 19)	intron (NM_019593, intron 6 of 19)	29156	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
184310	chr5	96885871	96886630	+	0	NA	intron (NM_001329229, intron 3 of 17)	intron (NM_001329229, intron 3 of 17)	9750	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
85668	chr16	56311351	56311450	+	0	NA	intron (NM_020988, intron 3 of 8)	intron (NM_020988, intron 3 of 8)	65880	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
196980	chr6	53180071	53180500	+	0	NA	Intergenic	L2a|LINE|L2	-31444	NM_003643	8521		NM_003643	ENSG00000137270	GCM1	GCMA|hGCMa	glial cells missing transcription factor 1	protein-coding
7040	chr1	31936421	31939030	+	0	NA	promoter-TSS (NM_001369860)	promoter-TSS (NM_001369860)	93	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
183202	chr5	76084301	76084900	+	0	NA	intron (NM_014979, intron 1 of 12)	CpG	1217	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
123431	chr19	54115001	54116450	+	0	NA	promoter-TSS (NM_013342).4	promoter-TSS (NM_013342).4	-29	NM_015629	26121		NM_015629	ENSG00000105618	PRPF31	NY-BR-99|PRP31|RP11|SNRNP61	pre-mRNA processing factor 31	protein-coding
239113	chrY	11294301	11294900	+	0	NA	Intergenic	Intergenic	1126990	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
178527	chr4	150969801	150970400	+	0	NA	intron (NM_001367550, intron 2 of 56)	Tigger1|DNA|TcMar-Tigger	45167	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
18112	chr1	160707201	160707900	+	0	NA	intron (NM_001256030, intron 1 of 2)	intron (NM_001256030, intron 1 of 2)	4272	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
211419	chr7	105051521	105051980	+	0	NA	intron (NM_182931, intron 3 of 26)	AluSx|SINE|Alu	37545	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
155768	chr22	39233521	39233780	+	0	NA	intron (NM_033016, intron 2 of 6)	intron (NM_033016, intron 2 of 6)	7259	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
152601	chr22	21383901	21386080	+	0	NA	exon (NM_001128633, exon 1 of 1)	exon (NM_001128633, exon 1 of 1)	1239	NM_001128635	440804		NM_001128635	ENSG00000274600	RIMBP3B	RIM-BP3.2|RIM-BP3.B|RIMBP3.2	RIMS binding protein 3B	protein-coding
3565	chr1	16161601	16163330	+	0	NA	Intergenic	Intergenic	-6396	NM_004431	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
145498	chr20	43952051	43952550	+	0	NA	intron (NM_001098798, intron 1 of 7)	AluJr|SINE|Alu	6404	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
142950	chr20	19213051	19213150	+	0	NA	intron (NM_020689, intron 1 of 16)	CpG	458	NM_020689	57419		NM_020689	ENSG00000185052	SLC24A3	NCKX3	solute carrier family 24 member 3	protein-coding
147315	chr20	57709661	57711100	+	0	NA	promoter-TSS (NM_020182)	promoter-TSS (NM_020182)	197	NR_131157	105416157		NR_131157	ENSG00000278709	NKILA	-	NF-kappaB interacting lncRNA	ncRNA
24704	chr1	247331601	247333150	+	0	NA	promoter-TSS (NM_001329733)	promoter-TSS (NM_001329733)	321	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
29761	chr10	72242351	72242880	+	0	NA	Intergenic	AluSq2|SINE|Alu	-25481	NM_001369099	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
3867	chr1	16975821	16976080	+	0	NA	intron (NM_001135248, intron 6 of 8)	intron (NM_001135248, intron 6 of 8)	4670	NM_002403	4237		NM_002403	ENSG00000117122	MFAP2	MAGP|MAGP-1|MAGP1	microfibril associated protein 2	protein-coding
228276	chr9	98071851	98072150	+	0	NA	intron (NM_018946, intron 2 of 5)	intron (NM_018946, intron 2 of 5)	15268	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
185568	chr5	131381051	131381380	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	117162	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
198677	chr6	107955321	107955980	+	0	NA	intron (NM_007214, intron 1 of 20)	AluSz|SINE|Alu	2558	NM_007214	11231		NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L	SEC63 homolog, protein translocation regulator	protein-coding
155796	chr22	39299471	39299630	+	0	NA	Intergenic	Intergenic	14361	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
115716	chr19	16233571	16234280	+	0	NA	intron (NM_001130524, intron 11 of 12)	intron (NM_001130524, intron 11 of 12)	36014	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
145466	chr20	43728321	43728980	+	0	NA	Intergenic	Intergenic	-1648	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
178845	chr4	153759251	153760080	+	0	NA	intron (NM_173662, intron 1 of 8)	CpG	359	NM_173662	285533		NM_173662	ENSG00000145428	RNF175	-	ring finger protein 175	protein-coding
49271	chr12	19498071	19498230	+	0	NA	intron (NM_153207, intron 4 of 7)	intron (NM_153207, intron 4 of 7)	57551	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
178370	chr4	146450371	146450950	+	0	NA	intron (NR_133924, intron 4 of 9)	intron (NR_133924, intron 4 of 9)	42077	NR_107003	102465837		NR_107003	ENSG00000278438	MIR7849	hsa-mir-7849	microRNA 7849	ncRNA
219265	chr8	67339401	67340000	+	0	NA	intron (NM_006421, intron 1 of 38)	intron (NM_006421, intron 1 of 38)	4081	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
133692	chr2	127157771	127157930	+	0	NA	Intergenic	Intergenic	47917	NM_001001665	339761		NM_001001665	ENSG00000186684	CYP27C1	-	cytochrome P450 family 27 subfamily C member 1	protein-coding
164271	chr3	57573371	57573930	+	0	NA	intron (NM_001660, intron 5 of 5)	AluSz6|SINE|Alu	17376	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
39699	chr11	61742001	61742200	+	0	NA	intron (NM_006133, intron 19 of 19)	intron (NM_006133, intron 19 of 19)	-10536	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
130218	chr2	84716701	84716900	+	0	NA	intron (NM_001370, intron 58 of 76)	intron (NM_001370, intron 58 of 76)	164284	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
86293	chr16	58624621	58624930	+	0	NA	intron (NM_206999, intron 1 of 30)	AluSg|SINE|Alu	5051	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
88357	chr16	84574351	84574450	+	0	NA	intron (NM_021149, intron 3 of 3)	intron (NM_021149, intron 3 of 3)	43678	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
87496	chr16	71805671	71806300	+	0	NA	intron (NM_001128, intron 1 of 22)	AluJb|SINE|Alu	2849	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
89574	chr16	89264021	89264630	+	0	NA	Intergenic	AluJo|SINE|Alu	-31803	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
227571	chr9	92291221	92291480	+	0	NA	intron (NM_001378575, intron 1 of 34)	intron (NM_001378575, intron 1 of 34)	1197	NR_037424	100500918		NR_037424	ENSG00000281156	MIR3651	mir-3651	microRNA 3651	ncRNA
170140	chr3	183427621	183429080	+	0	NA	promoter-TSS (NM_015078)	promoter-TSS (NM_015078)	-81	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
19529	chr1	176206481	176208250	+	0	NA	promoter-TSS (NM_001001740)	promoter-TSS (NM_001001740)	-79	NM_022457	64326		NM_022457	ENSG00000143207	COP1	CFAP78|FAP78|RFWD2|RNF200	COP1 E3 ubiquitin ligase	protein-coding
180535	chr5	14593151	14594050	+	0	NA	intron (NM_019018, intron 1 of 7)	intron (NM_019018, intron 1 of 7)	11808	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
70483	chr14	102082621	102083330	+	0	NA	intron (NM_001017963, intron 10 of 11)	intron (NM_001017963, intron 10 of 11)	4069	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
150869	chr21	44106901	44108930	+	0	NA	intron (NM_005049, intron 1 of 20).2	CpG	516	NM_001368238	102724159		NM_001368238	ENSG00000275464	LOC102724159	-	periodic tryptophan protein 2 homolog	protein-coding
191779	chr6	14126351	14126850	+	0	NA	intron (NM_001040280, intron 2 of 4)	intron (NM_001040280, intron 2 of 4)	8828	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
71810	chr15	21774601	21775430	+	0	NA	Intergenic	AluJo|SINE|Alu	-39016	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
206807	chr7	36957671	36957830	+	0	NA	intron (NM_014800, intron 16 of 21)	MER83C|LTR|ERV1	27362	NM_001039459	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
161670	chr3	43345721	43346230	+	0	NA	TTS (NR_046757)	TTS (NR_046757)	5987	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
136809	chr2	181710721	181710800	+	0	NA	Intergenic	Intergenic	-30095	NR_146175	4760		NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|T2D|bHLHa3	neuronal differentiation 1	protein-coding
154367	chr22	33568151	33568650	+	0	NA	intron (NM_133642, intron 5 of 14)	LTR33|LTR|ERVL	3862	NM_001378631	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
148533	chr20	64117151	64117850	+	0	NA	Intergenic	Intergenic	-9935	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
77371	chr15	82828051	82828850	+	0	NA	intron (NM_001080435, intron 8 of 9)	intron (NM_001080435, intron 8 of 9)	18822	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
93950	chr17	21385521	21385650	+	0	NA	intron (NM_021012, intron 1 of 2)	intron (NM_021012, intron 1 of 2)	9228	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
11602	chr1	91683401	91683800	+	0	NA	non-coding (NR_036634, exon 18 of 18)	non-coding (NR_036634, exon 18 of 18)	182492	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
125159	chr2	10032271	10032800	+	0	NA	Intergenic	Intergenic	10866	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
152739	chr22	21694421	21694800	+	0	NA	exon (NM_001317996, exon 17 of 21)	exon (NM_001317996, exon 17 of 21)	28598	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
76637	chr15	75606151	75608030	+	0	NA	intron (NM_001042588, intron 6 of 8)	intron (NM_001042588, intron 6 of 8)	18635	NM_005701	10073		NM_005701	ENSG00000169371	SNUPN	KPNBL|RNUT1|Snurportin1	snurportin 1	protein-coding
77902	chr15	89171501	89171790	+	0	NA	intron (NM_152924, intron 5 of 10)	intron (NM_152924, intron 5 of 10)	49934	NM_000326	6017		NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
142878	chr20	17845951	17846450	+	0	NA	Intergenic	LTR33A|LTR|ERVL	116746	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
14297	chr1	143793771	143794130	+	0	NA	non-coding (NR_145442, exon 1 of 2)	non-coding (NR_145442, exon 1 of 2)	350	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
39856	chr11	62394671	62395430	+	0	NA	Intergenic	Intergenic	-23983	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
58432	chr12	131931821	131932450	+	0	NA	intron (NM_025215, intron 2 of 5)	AluJr|SINE|Alu	2859	NM_001002020	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
232558	chr9	136356621	136356880	+	0	NA	intron (NM_001200003, intron 3 of 3)	intron (NM_001200003, intron 3 of 3)	1968	NM_001200003	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
153206	chr22	23890721	23891180	+	0	NA	intron (NR_003082, intron 4 of 4)	intron (NR_003082, intron 4 of 4)	-3433	NM_002415	4282		NM_002415	ENSG00000240972	MIF	GIF|GLIF|MMIF	macrophage migration inhibitory factor	protein-coding
205754	chr7	23511671	23511830	+	0	NA	intron (NM_001362759, intron 3 of 6)	intron (NM_001362759, intron 3 of 6)	20231	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
81368	chr16	4882371	4882930	+	0	NA	TTS (NM_001079514)	TTS (NM_001079514)	34270	NM_001288656	29855		NM_016936	ENSG00000118900	UBN1	VT|VT4	ubinuclein 1	protein-coding
36878	chr11	10543921	10544380	+	0	NA	intron (NR_034094, intron 1 of 2)	MER52A|LTR|ERV1	2914	NR_046375	100129827		NR_034093	ENSG00000177112	IRAG1-AS1	MRVI1-AS1	IRAG1 antisense RNA 1	ncRNA
35965	chr11	2826201	2826630	+	0	NA	intron (NM_181798, intron 15 of 15)	intron (NM_181798, intron 15 of 15)	35154	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
76720	chr15	76059321	76060380	+	0	NA	promoter-TSS (NM_152335)	promoter-TSS (NM_152335)	-135	NM_152335	123591		NM_152335	ENSG00000169758	TMEM266	C15orf27|HVRP1|HsHVRP1|hTMEM266	transmembrane protein 266	protein-coding
187528	chr5	142576371	142576530	+	0	NA	Intergenic	L1M4a1|LINE|L1	44884	NM_001257212	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
155592	chr22	38762971	38763130	+	0	NA	Intergenic	MER68|LTR|ERVL	-7052	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
115512	chr19	15424621	15425180	+	0	NA	exon (NM_001330395, exon 6 of 8)	exon (NM_001330395, exon 6 of 8)	-5912	NM_001291478	26993		NM_014371	ENSG00000011243	AKAP8L	HA95|HAP95|NAKAP|NAKAP95	A-kinase anchoring protein 8 like	protein-coding
197008	chr6	53315921	53316250	+	0	NA	intron (NM_001242830, intron 1 of 6)	MIRb|SINE|MIR	21532	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
3135	chr1	12453501	12454330	+	0	NA	intron (NM_018156, intron 64 of 68)	intron (NM_018156, intron 64 of 68)	-53331	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
28009	chr10	43166801	43167030	+	0	NA	intron (NM_001319654, intron 4 of 5)	intron (NM_001319654, intron 4 of 5)	12018	NM_001319656	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
35990	chr11	2881671	2882200	+	0	NA	Intergenic	Intergenic	3830	NM_000076	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
114729	chr19	13187051	13187150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	36689	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
36171	chr11	3163801	3164390	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	1215	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
224498	chr9	18255101	18255330	+	0	NA	Intergenic	Intergenic	-218938	NM_001040272	92949		NM_052866	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS like 1	protein-coding
138825	chr2	216354401	216354600	+	0	NA	intron (NM_020814, intron 1 of 3)	intron (NM_020814, intron 1 of 3)	17983	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
58254	chr12	128807301	128807580	+	0	NA	intron (NM_145648, intron 5 of 7)	intron (NM_145648, intron 5 of 7)	16518	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
147426	chr20	58897571	58898130	+	0	NA	intron (NM_001077489, intron 2 of 11)	intron (NM_001077489, intron 2 of 11)	5687	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
230626	chr9	128636471	128637330	+	0	NA	intron (NM_052844, intron 3 of 8)	intron (NM_052844, intron 3 of 8)	19950	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
101070	chr17	64840871	64841450	+	0	NA	Intergenic	Intergenic	-3976	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
211571	chr7	105677001	105677200	+	0	NA	intron (NM_001385596, intron 3 of 11)	intron (NM_001385596, intron 3 of 11)	2055	NM_001318229	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
126537	chr2	28565371	28565530	+	0	NA	promoter-TSS (NR_138141)	promoter-TSS (NR_138141)	-907	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
130120	chr2	74554001	74555950	+	0	NA	intron (NM_001318867, intron 1 of 4)	CpG	815	NM_001381	1796		NM_001381	ENSG00000115325	DOK1	P62DOK|pp62	docking protein 1	protein-coding
201918	chr6	151388351	151388750	+	0	NA	intron (NM_020861, intron 1 of 2)	AluJr4|SINE|Alu	3009	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
20181	chr1	193043971	193044130	+	0	NA	intron (NM_001350842, intron 3 of 11)	MER77B|LTR|ERVL	13365	NR_135615	107397392		NR_135615	ENSG00000238754	SCARNA18B	-	small Cajal body-specific RNA 18B	ncRNA
205653	chr7	22825021	22825280	+	0	NA	Intergenic	Intergenic	-2301	NR_168014	54543		NM_019059	ENSG00000196683	TOMM7	GMPGS|TOM7	translocase of outer mitochondrial membrane 7	protein-coding
108524	chr18	74360951	74361250	+	0	NA	Intergenic	Intergenic	45261	NM_001174123	644041		NM_001174123	ENSG00000206043	C18orf63	DKFZP781G0119	chromosome 18 open reading frame 63	protein-coding
18951	chr1	168537051	168537150	+	0	NA	Intergenic	L2-1_AMi|LINE|L2	6897	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
231523	chr9	131425221	131425830	+	0	NA	intron (NM_013318, intron 1 of 31)	AluY|SINE|Alu	31439	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
163997	chr3	53160001	53161700	+	0	NA	promoter-TSS (NM_006254)	promoter-TSS (NM_006254)	-359	NM_006254	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
54590	chr12	92461271	92461430	+	0	NA	Intergenic	Intergenic	-5329	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
20888	chr1	202146671	202146830	+	0	NA	TTS (NM_001199797)	TTS (NM_001199797)	-2007	NM_001256129	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
208988	chr7	74216551	74216850	+	0	NA	intron (NM_032463, intron 3 of 13)	intron (NM_032463, intron 3 of 13)	6694	NM_014146	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
81677	chr16	11105251	11105730	+	0	NA	intron (NM_001243403, intron 18 of 20)	intron (NM_001243403, intron 18 of 20)	150692	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
73904	chr15	50685871	50687630	+	0	NA	promoter-TSS (NM_001301212)	promoter-TSS (NM_001301212)	47	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
65250	chr14	49900121	49900580	+	0	NA	Intergenic	AluSx|SINE|Alu	7268	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
27125	chr10	28168471	28168630	+	0	NA	intron (NR_134518, intron 2 of 16)	AluY|SINE|Alu	-95172	NR_132973	106635548		NR_132973		SNORD130	-	small nucleolar RNA, C/D box 130	snoRNA
57876	chr12	123391921	123392380	+	0	NA	intron (NM_001324506, intron 1 of 5)	intron (NM_001324506, intron 1 of 5)	875	NM_001324506	387893		NM_020382	ENSG00000183955	KMT5A	PR-Set7|PR/SET07|SET07|SET8|SETD8	lysine methyltransferase 5A	protein-coding
143086	chr20	22334171	22334330	+	0	NA	Intergenic	Intergenic	-51449	NR_110615	101929663		NR_110615	ENSG00000225321	LINC01427	-	long intergenic non-protein coding RNA 1427	ncRNA
205903	chr7	25159901	25160300	+	0	NA	intron (NM_001371352, intron 4 of 9)	intron (NM_001371352, intron 4 of 9)	20254	NM_001371351	136895		NM_138811	ENSG00000153790	SPMIP4	C7orf31	sperm microtubule inner protein 4	protein-coding
145775	chr20	45365201	45365400	+	0	NA	intron (NM_033542, intron 2 of 3)	intron (NM_033542, intron 2 of 3)	2131	NR_003189	767557		NR_003189	ENSG00000254806	SYS1-DBNDD2	C20orf169-DBNDD2	SYS1-DBNDD2 readthrough (NMD candidate)	ncRNA
52880	chr12	57191051	57191930	+	0	NA	exon (NM_002332, exon 44 of 89)	exon (NM_002332, exon 44 of 89)	-3014	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
43466	chr11	78138701	78140400	+	0	NA	promoter-TSS (NR_102280)	promoter-TSS (NR_102280)	76	NM_024079	79053		NM_024079	ENSG00000159063	ALG8	CDG1H|PCLD3	ALG8 alpha-1,3-glucosyltransferase	protein-coding
19370	chr1	173886721	173887380	+	0	NA	3' UTR (NM_001122770, exon 5 of 5)	3' UTR (NM_001122770, exon 5 of 5)	-18168	NR_152521	60674		NR_002578	ENSG00000234741	GAS5	NCRNA00030|SNHG2	growth arrest specific 5	ncRNA
179187	chr4	173289371	173289530	+	0	NA	intron (NM_001375601, intron 2 of 8)	MER61F|LTR|ERV1	21290	NR_036093	100422849		NR_036093	ENSG00000221296	MIR548T	-	microRNA 548t	ncRNA
54565	chr12	92324951	92325250	+	0	NA	Intergenic	L1PB1|LINE|L1	-96431	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
60988	chr13	46746951	46747090	+	0	NA	intron (NM_001164213, intron 18 of 18)	intron (NM_001164213, intron 18 of 18)	50141	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
68270	chr14	77045651	77046130	+	0	NA	intron (NR_110554, intron 1 of 3)	intron (NR_110554, intron 1 of 3)	4841	NR_110554	283575		NR_110554	ENSG00000246548	LINC02288	-	long intergenic non-protein coding RNA 2288	ncRNA
191797	chr6	14231901	14232100	+	0	NA	Intergenic	L2c|LINE|L2	53454	NR_108097	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
214744	chr7	151054601	151055150	+	0	NA	intron (NM_004935, intron 9 of 11)	intron (NM_004935, intron 9 of 11)	3022	NM_001164410	1020		NM_004935	ENSG00000164885	CDK5	LIS7|PSSALRE	cyclin dependent kinase 5	protein-coding
206782	chr7	36726271	36726710	+	0	NA	Intergenic	Intergenic	-1941	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
162484	chr3	48561951	48562050	+	0	NA	promoter-TSS (NM_001317136)	promoter-TSS (NM_001317136)	-871	NM_001317136	5210		NM_004567	ENSG00000114268	PFKFB4	-	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding
16165	chr1	153773321	153774500	+	0	NA	3' UTR (NM_023015, exon 30 of 30).2	3' UTR (NM_023015, exon 30 of 30).2	-1497	NR_145826	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
165813	chr3	105822271	105822630	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	45141	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
159625	chr3	15283901	15284100	+	0	NA	intron (NM_004844, intron 3 of 8)	MIRb|SINE|MIR	29816	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
41863	chr11	67201721	67202180	+	0	NA	intron (NM_012308, intron 5 of 20)	AluJr|SINE|Alu	-38064	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
226663	chr9	75010351	75011130	+	0	NA	intron (NM_152420, intron 3 of 7)	L1M4a1|LINE|L1	16411	NM_001320497	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
82251	chr16	15092801	15093030	+	0	NA	intron (NM_018427, intron 1 of 17)	L2a|LINE|L2	1357	NM_018427	54700		NM_018427	ENSG00000085721	RRN3	A-270G1.2|TIFIA	RRN3 homolog, RNA polymerase I transcription factor	protein-coding
77679	chr15	85617601	85617800	+	0	NA	intron (NM_007200, intron 8 of 36)	intron (NM_007200, intron 8 of 36)	-2250	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
216446	chr8	19505621	19505880	+	0	NA	exon (NM_001354475, exon 4 of 10)	exon (NM_001354475, exon 4 of 10)	96795	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
117376	chr19	19580471	19580830	+	0	NA	intron (NM_025245, intron 2 of 7)	intron (NM_025245, intron 2 of 7)	38037	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
94504	chr17	29385951	29386050	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-4363	NM_020791	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
60239	chr13	40566971	40567130	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	-86044	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
99561	chr17	50423771	50424400	+	0	NA	Intergenic	Intergenic	-2073	NM_001288968	80221		NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding
174195	chr4	36399801	36400150	+	0	NA	Intergenic	Intergenic	26453	NR_031701	100313806		NR_031701	ENSG00000283207	MIR1255B1	MIR1255B-1|MIRN1255B1	microRNA 1255b-1	ncRNA
15302	chr1	149848721	149849430	+	0	NA	Intergenic	L2|LINE|L2	1698	NR_036461	337873		NR_036461	ENSG00000261716	H2BC20P	H2B/t|HIST2H2BC|HIST2H2BD|LETN	H2B clustered histone 20, pseudogene	pseudo
161808	chr3	45464451	45464750	+	0	NA	intron (NM_001368263, intron 7 of 20)	intron (NM_001368263, intron 7 of 20)	44945	NR_048543	100885795		NR_048543		LARS2-AS1	-	LARS2 antisense RNA 1	ncRNA
33885	chr10	124455451	124455750	+	0	NA	Intergenic	Intergenic	-5565	NM_001146340	390010		NM_001146340	ENSG00000229544	NKX1-2	C10orf121|NKX-1.1|bB238F13.2	NK1 homeobox 2	protein-coding
29296	chr10	69315471	69316180	+	0	NA	promoter-TSS (NM_033496)	promoter-TSS (NM_033496)	-29	NM_033496	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
16190	chr1	153803671	153803830	+	0	NA	TTS (NM_020699)	TTS (NM_020699)	9803	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
11979	chr1	94429851	94429950	+	0	NA	intron (NM_001122674, intron 1 of 8)	THE1B-int|LTR|ERVL-MaLR	11511	NM_002858	5825		NM_002858	ENSG00000117528	ABCD3	ABC43|CBAS5|PMP70|PXMP1|ZWS2	ATP binding cassette subfamily D member 3	protein-coding
15971	chr1	151907471	151907850	+	0	NA	intron (NM_053055, intron 1 of 5)	intron (NM_053055, intron 1 of 5)	1851	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
10733	chr1	76105451	76105550	+	0	NA	intron (NM_001349108, intron 1 of 3)	MIR3|SINE|MIR	30754	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
9369	chr1	47230601	47231130	+	0	NA	intron (NM_003189, intron 1 of 5)	CpG	850	NM_001287347	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
81924	chr16	11750351	11750450	+	0	NA	TTS (NM_014153)	TTS (NM_014153)	-7543	NR_136671	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
229789	chr9	125240531	125242180	+	0	NA	promoter-TSS (NM_005347)	promoter-TSS (NM_005347)	-12	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
198699	chr6	108119421	108120280	+	0	NA	Intergenic	CpG	-3783	NR_145458	100287366		NR_145458	ENSG00000225174	OSTM1-AS1	-	OSTM1 antisense RNA 1	ncRNA
229617	chr9	124008321	124009150	+	0	NA	intron (NR_135129, intron 1 of 1)	CpG	661	NR_135129	100505588		NR_135129	ENSG00000236668	LHX2-AS1	-	LHX2 antisense RNA 1	ncRNA
141182	chr2	239289011	239290300	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-15807	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
168461	chr3	143036271	143037030	+	0	NA	intron (NM_001080415, intron 20 of 27)	L2b|LINE|L2	35080	NM_001320222	23350		NM_001080415	ENSG00000163714	U2SURP	SR140|fSAPa	U2 snRNP associated SURP domain containing	protein-coding
177893	chr4	128862551	128862930	+	0	NA	3' UTR (NM_024900, exon 9 of 9)	3' UTR (NM_024900, exon 9 of 9)	50896	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
64088	chr14	22588501	22590430	+	0	NA	promoter-TSS (NM_001344)	promoter-TSS (NM_001344)	-241	NM_001344	1603		NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
226764	chr9	76446151	76446650	+	0	NA	intron (NM_001097634, intron 1 of 2)	LTR86B2|LTR|ERVL	4734	NM_001097634	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
185792	chr5	132417871	132418700	+	0	NA	intron (NR_161242, intron 1 of 3)	MSTB|LTR|ERVL-MaLR	7356	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
42042	chr11	67448351	67448450	+	0	NA	Intergenic	Intergenic	-4003	NM_001379183	57010		NM_145200	ENSG00000175544	CABP4	CRSD|CSNB2B	calcium binding protein 4	protein-coding
199216	chr6	111802921	111803650	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-43368	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
214643	chr7	150749671	150749830	+	0	NA	Intergenic	Intergenic	12402	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
28663	chr10	60114871	60115050	+	0	NA	intron (NM_001149, intron 3 of 20)	L1MEg1|LINE|L1	26056	NM_001149	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
55274	chr12	102949251	102949350	+	0	NA	intron (NM_001354304, intron 1 of 13)	intron (NM_001354304, intron 1 of 13)	-8374	NM_004316	429		NM_004316	ENSG00000139352	ASCL1	ASH1|HASH1|MASH1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding
17835	chr1	159909201	159909400	+	0	NA	Intergenic	Intergenic	-9135	NM_012337	25790		NM_012337	ENSG00000213085	CFAP45	CCDC19|HTX11|NESG1	cilia and flagella associated protein 45	protein-coding
105302	chr17	82522921	82523200	+	0	NA	intron (NM_004514, intron 1 of 8)	AluSc5|SINE|Alu	3328	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
203672	chr7	1009421	1009950	+	0	NA	intron (NR_156697, intron 2 of 4)	intron (NR_156697, intron 2 of 4)	13341	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
42554	chr11	71789351	71789650	+	0	NA	Intergenic	Intergenic	24359	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
123223	chr19	52855201	52855780	+	0	NA	intron (NR_102300, intron 1 of 5)	L2|LINE|L2	2129	NR_102299	90333		NM_199132	ENSG00000204604	ZNF468	-	zinc finger protein 468	protein-coding
148112	chr20	63433551	63433650	+	0	NA	TTS (NM_172109)	TTS (NM_172109)	39055	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
136612	chr2	178804801	178805030	+	0	NA	intron (NM_133437, intron 1 of 191)	intron (NM_133437, intron 1 of 191)	2508	NM_133432	7273		NM_003319	ENSG00000155657	TTN	CMD1G|CMH9|CMPD4|CMYP5|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD	titin	protein-coding
208549	chr7	70764051	70764730	+	0	NA	intron (NM_015570, intron 7 of 18)	intron (NM_015570, intron 7 of 18)	-367754	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
157728	chr22	46575151	46575450	+	0	NA	Intergenic	Intergenic	-1788	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
138547	chr2	207539871	207540030	+	0	NA	intron (NR_163946, intron 1 of 8)	intron (NR_163946, intron 1 of 8)	9988	NM_134442	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123347	chr19	53868501	53870800	+	0	NA	5' UTR (NM_001020818, exon 1 of 2)	5' UTR (NM_001020818, exon 1 of 2)	259	NM_001020818	91663		NM_138373	ENSG00000179820	MYADM	SB135	myeloid associated differentiation marker	protein-coding
39391	chr11	60363471	60363730	+	0	NA	Intergenic	Intergenic	-14885	NM_206938	58475		NM_021201	ENSG00000166927	MS4A7	4SPAN2|CD20L4|CFFM4|MS4A8	membrane spanning 4-domains A7	protein-coding
224466	chr9	15533071	15533480	+	0	NA	Intergenic	Intergenic	-19768	NM_001348002	203238		NM_173550	ENSG00000164989	CCDC171	C9orf93|bA536D16.1|bA778P13.1	coiled-coil domain containing 171	protein-coding
7646	chr1	35588921	35589530	+	0	NA	intron (NM_178548, intron 4 of 6)	(TG)n|Simple_repeat|Simple_repeat	15911	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
227419	chr9	89671551	89671650	+	0	NA	intron (NR_024280, intron 2 of 5)	intron (NR_024280, intron 2 of 5)	31817	NR_024280	100129066		NR_024280	ENSG00000237372	LINC03062	-	long intergenic non-protein coding RNA 3062	ncRNA
168790	chr3	152127151	152127250	+	0	NA	Intergenic	L2|LINE|L2	78229	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
99292	chr17	49789001	49790350	+	0	NA	intron (NM_001199155, intron 1 of 13)	L2c|LINE|L2	994	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
15748	chr1	151136551	151136850	+	0	NA	intron (NM_001178061, intron 11 of 19)	intron (NM_001178061, intron 11 of 19)	9931	NM_030913	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
82948	chr16	21867921	21868750	+	0	NA	Intergenic	AluJb|SINE|Alu	-1600	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
117043	chr19	18938251	18938350	+	0	NA	intron (NM_001145721, intron 4 of 9)	MIR3|SINE|MIR	749	NM_001145724	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
169514	chr3	170031521	170031780	+	0	NA	Intergenic	MER9a3|LTR|ERVK	-6345	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
55754	chr12	108516751	108517500	+	0	NA	exon (NM_007076, exon 2 of 3)	exon (NM_007076, exon 2 of 3)	1848	NM_007076	11153		NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain protein adenylyltransferase	protein-coding
354	chr1	1011421	1011800	+	0	NA	Intergenic	L1MB5|LINE|L1	-1887	NM_005101	9636		NM_005101	ENSG00000187608	ISG15	G1P2|IFI15|IMD38|IP17|UCRP|hUCRP	ISG15 ubiquitin like modifier	protein-coding
93234	chr17	17849901	17851950	+	0	NA	exon (NM_001288787, exon 12 of 14)	exon (NM_001288787, exon 12 of 14)	-13914	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
77861	chr15	88897021	88898300	+	0	NA	Intergenic	Intergenic	-2116	NM_178232	145864		NM_178232	ENSG00000140511	HAPLN3	EXLD1|HsT19883	hyaluronan and proteoglycan link protein 3	protein-coding
30742	chr10	84180271	84180430	+	0	NA	intron (NM_207373, intron 2 of 2)	SVA_B|Retroposon|SVA	6549	NM_207373	387695		NM_207373	ENSG00000188373	GPR15LG	AP-57|AP57|C10orf99|CSBF|GPR15L|UNQ1833	G protein-coupled receptor 15 ligand	protein-coding
209151	chr7	75158851	75159480	+	0	NA	intron (NR_003187, intron 8 of 10)	intron (NR_003187, intron 8 of 10)	12833	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
196687	chr6	44828901	44829100	+	0	NA	3' UTR (NM_003599, exon 11 of 11)	3' UTR (NM_003599, exon 11 of 11)	-277119	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
128409	chr2	55232001	55233900	+	0	NA	promoter-TSS (NR_148543)	promoter-TSS (NR_148543)	272	NM_001177413	6233		NM_002954	ENSG00000143947	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80|eS31	ribosomal protein S27a	protein-coding
160297	chr3	27425451	27425550	+	0	NA	intron (NM_001258379, intron 6 of 24)	AluSp|SINE|Alu	31278	NM_003615	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
201692	chr6	149568171	149568550	+	0	NA	intron (NM_138785, intron 1 of 7)	L1ME2z|LINE|L1	1985	NM_138785	116254		NM_138785	ENSG00000055211	GINM1	C6orf72	glycosylated integral membrane protein 1	protein-coding
71545	chr14	106229921	106230180	+	0	NA	Intergenic	Intergenic	-57624	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
142907	chr20	17987971	17988730	+	0	NA	intron (NM_001310338, intron 5 of 5)	intron (NM_001310338, intron 5 of 5)	19332	NM_001310339	92667		NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
154348	chr22	32480351	32480680	+	0	NA	intron (NM_012179, intron 2 of 8)	L2c|LINE|L2	5278	NM_001033024	25793		NM_012179	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
62407	chr13	99288951	99289050	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	18399	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
226286	chr9	68321251	68322130	+	0	NA	Intergenic	SATR1|Satellite|Satellite	18823	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
77168	chr15	80061721	80062530	+	0	NA	intron (NM_001242914, intron 1 of 6)	intron (NM_001242914, intron 1 of 6)	1965	NM_001242914	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
123841	chr19	55231551	55232430	+	0	NA	intron (NM_014931, intron 18 of 23)	intron (NM_014931, intron 18 of 23)	-1038	NR_106862	102465482		NR_106862	ENSG00000275519	MIR6804	hsa-mir-6804	microRNA 6804	ncRNA
191542	chr6	11495351	11495600	+	0	NA	Intergenic	Intergenic	-42274	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
43280	chr11	75814271	75815930	+	0	NA	promoter-TSS (NR_144531)	promoter-TSS (NR_144531)	-110	NM_003369	7405		NM_003369	ENSG00000198382	UVRAG	DHTX|VPS38|p63	UV radiation resistance associated	protein-coding
220322	chr8	98910701	98910900	+	0	NA	intron (NM_001256312, intron 1 of 12)	intron (NM_001256312, intron 1 of 12)	31810	NM_001256312	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
152528	chr22	20976351	20977050	+	0	NA	exon (NM_001018060, exon 12 of 20)	exon (NM_001018060, exon 12 of 20)	-5597	NM_006767	8216		NM_006767	ENSG00000099949	LZTR1	BTBD29|LZTR-1|NS10|NS2|SWNTS2	leucine zipper like post translational regulator 1	protein-coding
77400	chr15	83092501	83092700	+	0	NA	Intergenic	MER39|LTR|ERV1	-15045	NR_148561	53346		NM_023003	ENSG00000136404	TM6SF1	-	transmembrane 6 superfamily member 1	protein-coding
31293	chr10	92572651	92575100	+	0	NA	promoter-TSS (NM_001322796)	promoter-TSS (NM_001322796)	218	NM_004969	3416		NM_004969	ENSG00000119912	IDE	INSULYSIN	insulin degrading enzyme	protein-coding
176380	chr4	88609001	88609200	+	0	NA	intron (NM_001375479, intron 4 of 25)	AluJo|SINE|Alu	16620	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
69348	chr14	93969501	93969700	+	0	NA	intron (NM_001202429, intron 1 of 9)	intron (NM_001202429, intron 1 of 9)	6970	NM_001202429	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
45673	chr11	119029771	119031780	+	0	NA	intron (NM_001164278, intron 1 of 11)	CpG	102	NM_001467	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
93452	chr17	18680051	18680150	+	0	NA	intron (NM_001368134, intron 3 of 3)	AluSc8|SINE|Alu	2214	NM_001368135	2310		NM_001368134	ENSG00000240445	FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B	protein-coding
142657	chr20	5835151	5837100	+	0	NA	intron (NM_001303478, intron 3 of 3)	intron (NM_001303478, intron 3 of 3)	-75385	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
25140	chr10	4153901	4154510	+	0	NA	Intergenic	Intergenic	89707	NR_108040	100652988		NR_108040		LINC00702	-	long intergenic non-protein coding RNA 702	ncRNA
38585	chr11	46228351	46228850	+	0	NA	Intergenic	AluSz|SINE|Alu	-49062	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
4219	chr1	19466051	19466800	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	17870	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
6417	chr1	28062721	28063430	+	0	NA	intron (NR_104214, intron 1 of 16)	intron (NR_104214, intron 1 of 16)	25535	NM_001282560	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
76131	chr15	72532901	72533650	+	0	NA	intron (NM_005744, intron 2 of 13)	AluSz|SINE|Alu	-53942	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
150906	chr21	44167301	44167580	+	0	NA	Intergenic	Intergenic	-7578	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
138792	chr2	216110101	216111080	+	0	NA	intron (NM_021141, intron 1 of 20)	intron (NM_021141, intron 1 of 20)	1242	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
82771	chr16	21435071	21435730	+	0	NA	promoter-TSS (NR_024456).2	promoter-TSS (NR_024456).2	-945	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
98380	chr17	46493871	46494030	+	0	NA	Intergenic	AluJo|SINE|Alu	-18760	NM_001006607	474170		NM_001006607	ENSG00000238083	LRRC37A2	LRRC37	leucine rich repeat containing 37 member A2	protein-coding
180427	chr5	10433351	10433650	+	0	NA	intron (NM_001270660, intron 24 of 24)	intron (NM_001270660, intron 24 of 24)	8351	NR_102746	100505845		NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
166610	chr3	119320851	119321150	+	0	NA	intron (NR_046748, intron 1 of 1)	THE1B|LTR|ERVL-MaLR	1760	NR_046748	100874246		NR_046748	ENSG00000241155	ARHGAP31-AS1	-	ARHGAP31 antisense RNA 1	ncRNA
197464	chr6	75268151	75268580	+	0	NA	intron (NM_018247, intron 1 of 6)	MER21C|LTR|ERVL	16427	NM_018247	55754		NM_018247	ENSG00000112697	TMEM30A	C6orf67|CDC50A	transmembrane protein 30A	protein-coding
211820	chr7	108146121	108146500	+	0	NA	Intergenic	Intergenic	-15949	NM_001318047	22798		NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
143534	chr20	31571771	31571930	+	0	NA	intron (NR_046853, intron 2 of 2)	AluY|SINE|Alu	1413	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
51498	chr12	52119571	52120700	+	0	NA	Intergenic	Intergenic	26566	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
186258	chr5	134521951	134522250	+	0	NA	Intergenic	L2a|LINE|L2	-2215	NM_001308143	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
24513	chr1	244655521	244655850	+	0	NA	intron (NM_001297746, intron 1 of 3)	L2c|LINE|L2	2559	NM_001297746	51029		NM_016076	ENSG00000121644	DESI2	C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1	desumoylating isopeptidase 2	protein-coding
30308	chr10	75296301	75296600	+	0	NA	promoter-TSS (NR_038223)	promoter-TSS (NR_038223)	67	NR_038223	253264		NR_038223	ENSG00000226051	ZNF503-AS1	-	ZNF503 antisense RNA 1	ncRNA
68750	chr14	91047221	91047880	+	0	NA	intron (NM_001322228, intron 1 of 15)	intron (NM_001322228, intron 1 of 15)	12574	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
225860	chr9	38279471	38279830	+	0	NA	Intergenic	MER41E|LTR|ERV1	-113052	NM_000692	219		NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
173456	chr4	8412821	8413280	+	0	NA	intron (NM_001375787, intron 5 of 17)	intron (NM_001375787, intron 5 of 17)	15398	NM_001375787	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
150656	chr21	43421901	43422100	+	0	NA	exon (NM_001320643, exon 4 of 14).2	exon (NM_001320643, exon 4 of 14).2	5131	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
69702	chr14	98184471	98184630	+	0	NA	Intergenic	Intergenic	-206426	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
193777	chr6	31365371	31366130	+	0	NA	Intergenic	Intergenic	-8571	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
52133	chr12	54208701	54208980	+	0	NA	Intergenic	Intergenic	-19846	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
83987	chr16	29401651	29402000	+	0	NA	intron (NM_001310137, intron 2 of 7)	MLT1I|LTR|ERVL-MaLR	2720	NM_001310137	728888		NM_001310137	ENSG00000254206	NPIPB11	NPIP	nuclear pore complex interacting protein family member B11	protein-coding
76838	chr15	77457371	77457850	+	0	NA	intron (NM_018200, intron 2 of 10)	intron (NM_018200, intron 2 of 10)	36722	NM_001304504	10363		NM_018200	ENSG00000140382	HMG20A	HMGX1|HMGXB1	high mobility group 20A	protein-coding
48334	chr12	9118121	9118430	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-2046	NM_001347423	2		NM_000014	ENSG00000175899	A2M	A2MD|CPAMD5|FWP007|S863-7	alpha-2-macroglobulin	protein-coding
196719	chr6	45070671	45071030	+	0	NA	intron (NM_001350327, intron 2 of 9)	intron (NM_001350327, intron 2 of 9)	126920	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
26798	chr10	23364651	23364750	+	0	NA	Intergenic	L2a|LINE|L2	-19903	NM_153714	256815		NM_153714	ENSG00000179133	C10orf67	C10orf115|LINC01552	chromosome 10 open reading frame 67	protein-coding
61953	chr13	79381071	79381550	+	0	NA	intron (NM_022118, intron 1 of 20)	intron (NM_022118, intron 1 of 20)	24911	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
23456	chr1	228486021	228487000	+	0	NA	promoter-TSS (NM_001010858).2	promoter-TSS (NM_001010858).2	-872	NM_001010858	149603		NM_001010858	ENSG00000168159	RNF187	RACO-1|RACO1	ring finger protein 187	protein-coding
176234	chr4	86498521	86498800	+	0	NA	Intergenic	Intergenic	43892	NR_039657	100616463		NR_039657	ENSG00000266515	MIR4452	-	microRNA 4452	ncRNA
228138	chr9	96779871	96780030	+	0	NA	Intergenic	Intergenic	-1821	NM_014930	22869		NM_014930	ENSG00000081386	ZNF510	-	zinc finger protein 510	protein-coding
51105	chr12	50053601	50053800	+	0	NA	Intergenic	Intergenic	-3896	NM_001095	41		NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding
185547	chr5	131360121	131360380	+	0	NA	intron (NM_001038702, intron 2 of 4)	AluSq2|SINE|Alu	96197	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
151553	chr21	46551511	46552090	+	0	NA	intron (NM_001353942, intron 24 of 37)	intron (NM_001353942, intron 24 of 37)	53282	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
136966	chr2	190413571	190414400	+	0	NA	intron (NM_001375986, intron 1 of 7)	intron (NM_001375986, intron 1 of 7)	5127	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
217324	chr8	27461001	27461200	+	0	NA	3' UTR (NM_000742, exon 7 of 7)	3' UTR (NM_000742, exon 7 of 7)	18161	NM_000742	1135		NM_000742	ENSG00000120903	CHRNA2	-	cholinergic receptor nicotinic alpha 2 subunit	protein-coding
107455	chr18	46536251	46537150	+	0	NA	intron (NM_144612, intron 26 of 39)	intron (NM_144612, intron 26 of 39)	-17614	NM_001173129	125336		NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology PLAT domains 1	protein-coding
172191	chr4	1245001	1245200	+	0	NA	intron (NM_001377192, intron 1 of 9)	intron (NM_001377192, intron 1 of 9)	3628	NM_001377188	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
126316	chr2	27306171	27308600	+	0	NA	TTS (NM_003353)	TTS (NM_003353)	1060	NM_003353	7349		NM_003353	ENSG00000163794	UCN	UCN1|UI|UROC	urocortin	protein-coding
195209	chr6	36122371	36122730	+	0	NA	Intergenic	L2a|LINE|L2	-7963	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
206850	chr7	37408271	37408500	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	40567	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
208576	chr7	72865571	72865830	+	0	NA	intron (NM_001382704, intron 5 of 7)	intron (NM_001382704, intron 5 of 7)	5806	NM_001382704	441251		NM_001034844		SPDYE7P	-	speedy/RINGO cell cycle regulator family member E7, pseudogene	pseudo
23305	chr1	228072801	228073350	+	0	NA	TTS (NR_158166)	TTS (NR_158166)	3475	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
183185	chr5	75642451	75642780	+	0	NA	intron (NM_001276713, intron 7 of 13)	L1PA2|LINE|L1	31162	NM_001276713	728780		NM_001271529	ENSG00000189045	ANKDD1B	-	ankyrin repeat and death domain containing 1B	protein-coding
21853	chr1	207454051	207455000	+	0	NA	intron (NM_001877, intron 1 of 18)	CpG	197	NM_001006658	1380		NM_001877	ENSG00000117322	CR2	C3DR|CD21|CR|CVID7|SLEB9	complement C3d receptor 2	protein-coding
155747	chr22	39176351	39176950	+	0	NA	Intergenic	Intergenic	-23970	NM_175709	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
181753	chr5	50716151	50716930	+	0	NA	intron (NM_024615, intron 2 of 25)	LTR54B|LTR|ERV1	49126	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
70444	chr14	102049171	102049330	+	0	NA	intron (NM_001376, intron 74 of 77)	intron (NM_001376, intron 74 of 77)	37794	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
130674	chr2	86396471	86396730	+	0	NA	Intergenic	Intergenic	-44771	NM_018433	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
89436	chr16	88953621	88954080	+	0	NA	TTS (NR_168285)	TTS (NR_168285)	-12500	NM_175931	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
120923	chr19	45647171	45647330	+	0	NA	Intergenic	AluSg|SINE|Alu	-1621	NM_001352052	24139		NM_012155	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	EMAP like 2	protein-coding
161977	chr3	46314671	46314830	+	0	NA	Intergenic	Intergenic	-38994	NM_001123041	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
50602	chr12	48670651	48671000	+	0	NA	intron (NM_017822, intron 5 of 9)	AluJo|SINE|Alu	-3232	NR_002951	677794		NR_002951	ENSG00000207313	SNORA2B	ACA2b	small nucleolar RNA, H/ACA box 2B	snoRNA
91164	chr17	3788171	3788550	+	0	NA	intron (NM_002208, intron 1 of 30)	AluJb|SINE|Alu	12828	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
168338	chr3	141875421	141875800	+	0	NA	Intergenic	Intergenic	-1033	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
13689	chr1	116724721	116725450	+	0	NA	Intergenic	Intergenic	-29345	NM_001328609	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
65770	chr14	54437671	54438100	+	0	NA	intron (NM_005776, intron 1 of 4)	intron (NM_005776, intron 1 of 4)	3489	NM_005776	10175		NM_005776	ENSG00000100528	CNIH1	CNIH|CNIH-1|CNIL|TGAM77	cornichon family member 1	protein-coding
185825	chr5	132454071	132454900	+	0	NA	intron (NR_161242, intron 3 of 3)	HAL1ME|LINE|L1	36288	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
103090	chr17	77329751	77330450	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	10585	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
2474	chr1	9662171	9662530	+	0	NA	intron (NM_005026, intron 1 of 23)	intron (NM_005026, intron 1 of 23)	-7764	NR_027045	644997		NM_001045478	ENSG00000179840	PIK3CD-AS1	C1orf200	PIK3CD antisense RNA 1	ncRNA
213591	chr7	139382471	139382650	+	0	NA	intron (NM_016019, intron 2 of 9)	AluJb|SINE|Alu	22666	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
136998	chr2	190575101	190576050	+	0	NA	Intergenic	Intergenic	-40853	NR_136298	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
39021	chr11	47751401	47751600	+	0	NA	intron (NM_015308, intron 4 of 16)	MER20|DNA|hAT-Charlie	15841	NM_015308	23360		NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding
130773	chr2	86838601	86838880	+	0	NA	3' UTR (NM_004931, exon 6 of 6)	3' UTR (NM_004931, exon 6 of 6)	-23085	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
236148	chrX	63687151	63687330	+	0	NA	intron (NM_001330495, intron 5 of 10)	L1MA4|LINE|L1	-15738	NR_138419	100874355		NR_138419	ENSG00000231729	ARHGEF9-IT1	-	ARHGEF9 intronic transcript 1	ncRNA
182728	chr5	68260471	68261080	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-27744	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
198970	chr6	110889471	110889980	+	0	NA	intron (NM_001634, intron 3 of 8)	AluSq2|SINE|Alu	14941	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
85867	chr16	57037171	57037730	+	0	NA	intron (NM_001384955, intron 15 of 47)	LTR16A1|LTR|ERVL	47893	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
181654	chr5	50411301	50411500	+	0	NA	intron (NM_198449, intron 2 of 8)	intron (NM_198449, intron 2 of 8)	29888	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
29485	chr10	70575371	70575530	+	0	NA	Intergenic	LTR16B1|LTR|ERVL	27291	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
18248	chr1	161054821	161055280	+	0	NA	intron (NM_001287600, intron 2 of 10)	intron (NM_001287600, intron 2 of 10)	-9073	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
1306	chr1	2393471	2393880	+	0	NA	intron (NM_007033, intron 1 of 6)	MIRc|SINE|MIR	1834	NM_007033	11079		NM_007033	ENSG00000157916	RER1	-	retention in endoplasmic reticulum sorting receptor 1	protein-coding
213417	chr7	137996451	137997200	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	5261	NM_194071	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
237758	chrX	129742551	129743100	+	0	NA	intron (NM_003399, intron 2 of 20)	AluSx1|SINE|Alu	3846	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
207271	chr7	43972871	43973330	+	0	NA	intron (NR_003655, intron 8 of 15)	intron (NR_003655, intron 8 of 15)	-24768	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
48653	chr12	10424521	10424780	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-4055	NM_007333	3823		NM_002261	ENSG00000205810	KLRC3	NKG2-E|NKG2E	killer cell lectin like receptor C3	protein-coding
216479	chr8	19769601	19769800	+	0	NA	Intergenic	MER66B|LTR|ERV1	-11671	NR_148897	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
110721	chr19	2314671	2315030	+	0	NA	Intergenic	AluJo|SINE|Alu	-6696	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
117349	chr19	19538001	19538660	+	0	NA	promoter-TSS (NM_153221)	promoter-TSS (NM_153221)	65	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
37639	chr11	21746131	21746250	+	0	NA	Intergenic	MIRc|SINE|MIR	-446895	NM_213599	203859		NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|LGMDR12|TMEM16E	anoctamin 5	protein-coding
178435	chr4	147824621	147825080	+	0	NA	intron (NM_024605, intron 3 of 22)	THE1D|LTR|ERVL-MaLR	42255	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
171638	chr3	197592471	197592830	+	0	NA	Intergenic	Intergenic	-19327	NM_203315	622		NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding
146344	chr20	49243551	49243650	+	0	NA	intron (NM_017895, intron 19 of 20)	intron (NM_017895, intron 19 of 20)	24184	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
58774	chr12	132717601	132717800	+	0	NA	intron (NM_001170544, intron 3 of 5)	CpG	6858	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
181904	chr5	54644201	54644600	+	0	NA	Intergenic	Intergenic	58924	NR_104659	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
22564	chr1	222646121	222646530	+	0	NA	intron (NM_001324062, intron 7 of 28)	AluSz|SINE|Alu	2022	NM_001300867	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
160122	chr3	19965971	19966130	+	0	NA	intron (NM_001292048, intron 2 of 5)	L1MB3|LINE|L1	18953	NM_004162	5868		NM_004162	ENSG00000144566	RAB5A	RAB5	RAB5A, member RAS oncogene family	protein-coding
78467	chr15	92889651	92891080	+	0	NA	intron (NR_037600, intron 3 of 4)	AluYb8|SINE|Alu	7069	NR_037602	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
66182	chr14	60656421	60657980	+	0	NA	Intergenic	CpG	-7723	NM_005982	6495		NM_005982	ENSG00000126778	SIX1	BOS3|DFNA23|TIP39	SIX homeobox 1	protein-coding
58615	chr12	132491451	132491550	+	0	NA	intron (NM_001382740, intron 1 of 11)	intron (NM_001382740, intron 1 of 11)	1349	NM_001382740	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
40216	chr11	63534101	63534380	+	0	NA	Intergenic	MER31A|LTR|ERV1	-2568	NM_004585	5920		NM_004585	ENSG00000133321	PLAAT4	HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3	phospholipase A and acyltransferase 4	protein-coding
231158	chr9	129879101	129879630	+	0	NA	intron (NM_001110303, intron 23 of 25)	intron (NM_001110303, intron 23 of 25)	9760	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
64543	chr14	24465371	24465730	+	0	NA	intron (NR_110032, intron 2 of 2)	L1ME3A|LINE|L1	22597	NR_110032	101927045		NR_110032		LOC101927045	-	uncharacterized LOC101927045	ncRNA
237570	chrX	121308351	121308650	+	0	NA	Intergenic	Intergenic	-62472	NR_037444	100500869		NR_037444	ENSG00000265456	MIR3672	-	microRNA 3672	ncRNA
85207	chr16	47045521	47045800	+	0	NA	Intergenic	Intergenic	-71986	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
153333	chr22	24317271	24317430	+	0	NA	intron (NM_001254732, intron 3 of 14)	SVA_D|Retroposon|SVA	-24758	NM_001254733	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
147850	chr20	62803251	62803350	+	0	NA	intron (NR_102430, intron 1 of 2)	intron (NR_102430, intron 1 of 2)	-1535	NM_007346	11054		NM_007346	ENSG00000060491	OGFR	-	opioid growth factor receptor	protein-coding
186644	chr5	138562851	138562950	+	0	NA	intron (NM_004134, intron 9 of 16)	intron (NM_004134, intron 9 of 16)	-1790	NR_002913	26785		NR_002913	ENSG00000206989	SNORD63	RNU63|SNORD63A|U63	small nucleolar RNA, C/D box 63	snoRNA
176499	chr4	94206401	94206800	+	0	NA	intron (NR_125922, intron 1 of 8)	L1MA3|LINE|L1	956	NR_125922	101929210		NR_125922	ENSG00000246541	SMARCAD1-DT	-	SMARCAD1 divergent transcript	ncRNA
31744	chr10	97769621	97769880	+	0	NA	intron (NM_003015, intron 1 of 2)	intron (NM_003015, intron 1 of 2)	2249	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
99586	chr17	50505601	50506150	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-2564	NR_158785	84073		NM_032133	ENSG00000136449	MYCBPAP	AMAP-1|AMAP1	MYCBP associated protein	protein-coding
53835	chr12	69514801	69515400	+	0	NA	promoter-TSS (NR_145803)	promoter-TSS (NR_145803)	-340	NR_145803	109623461		NR_145803		SNORA113	-	small nucleolar RNA, H/ACA box 113	snoRNA
52355	chr12	55619421	55620000	+	0	NA	Intergenic	Intergenic	-17182	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
74437	chr15	59354721	59355150	+	0	NA	intron (NM_004998, intron 1 of 27)	intron (NM_004998, intron 1 of 27)	17936	NM_004998	4643		NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
107023	chr18	32095871	32096350	+	0	NA	intron (NM_198128, intron 1 of 4)	intron (NM_198128, intron 1 of 4)	3504	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
110677	chr19	2267451	2268080	+	0	NA	Intergenic	AluSc|SINE|Alu	-1721	NM_001301020	4946		NM_004152	ENSG00000104904	OAZ1	AZ1|AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
96094	chr17	39617321	39618500	+	0	NA	Intergenic	CpG	-9042	NM_032192	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
165663	chr3	101854871	101855430	+	0	NA	exon (NM_001005474, exon 8 of 13)	exon (NM_001005474, exon 8 of 13)	5636	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
141354	chr2	240620971	240622000	+	0	NA	intron (NM_001195381, intron 5 of 5)	AluSg|SINE|Alu	-3760	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
89103	chr16	88489421	88489680	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	20632	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
70055	chr14	100131771	100131930	+	0	NA	intron (NM_016337, intron 7 of 13)	L2b|LINE|L2	22195	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
226813	chr9	77179021	77179550	+	0	NA	intron (NM_001018037, intron 1 of 70)	L1ME1|LINE|L1	-1368	NR_026668	100286938		NR_026668		VPS13A-AS1	-	VPS13A antisense RNA 1	ncRNA
44928	chr11	115869471	115870030	+	0	NA	Intergenic	L1MA4A|LINE|L1	-109550	NR_034148	283143		NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
184855	chr5	112146921	112147400	+	0	NA	intron (NM_001347887, intron 22 of 23)	intron (NM_001347887, intron 22 of 23)	-13366	NR_015370	114915		NM_053000		EPB41L4A-AS1	C5orf26|NCRNA00219|TIGA1	EPB41L4A antisense RNA 1	ncRNA
1064	chr1	1905921	1906950	+	0	NA	Intergenic	Intergenic	-8825	NM_001330313	163688		NM_138705	ENSG00000169885	CALML6	CAGLP	calmodulin like 6	protein-coding
58114	chr12	124868701	124869650	+	0	NA	Intergenic	Intergenic	-5311	NM_001082959	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
157851	chr22	48576851	48576950	+	0	NA	intron (NM_015381, intron 1 of 3)	CpG-19266	560	NM_015381	25817		NM_015381	ENSG00000219438	TAFA5	FAM19A5|QLLK5208|TAFA-5|UNQ5208	TAFA chemokine like family member 5	protein-coding
42313	chr11	68468301	68469700	+	0	NA	intron (NM_001352362, intron 2 of 24)	intron (NM_001352362, intron 2 of 24)	8248	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
78784	chr15	99432101	99432300	+	0	NA	Intergenic	Intergenic	-133217	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
8670	chr1	41896671	41896830	+	0	NA	intron (NR_038260, intron 1 of 2)	AluSc8|SINE|Alu	22172	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
187153	chr5	140554401	140555250	+	0	NA	intron (NM_001035235, intron 2 of 4)	L2a|LINE|L2	2631	NR_045587	10011		NM_001035235	ENSG00000213523	SRA1	SRA|SRAP|STRAA1|pp7684	steroid receptor RNA activator 1	protein-coding
201375	chr6	144856021	144856280	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	273002	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
91690	chr17	6223351	6223450	+	0	NA	Intergenic	L1MD2|LINE|L1	152786	NM_015253	23302		NM_015253	ENSG00000179314	WSCD1	-	WSC domain containing 1	protein-coding
103483	chr17	78357301	78358000	+	0	NA	3' UTR (NM_003955, exon 2 of 2)	3' UTR (NM_003955, exon 2 of 2)	2017	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
212171	chr7	116880601	116880800	+	0	NA	intron (NM_006136, intron 1 of 9)	AluSx1|SINE|Alu	18113	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
201840	chr6	150141271	150141430	+	0	NA	Intergenic	Intergenic	-1694	NM_030949	81706		NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1 regulatory inhibitor subunit 14C	protein-coding
45900	chr11	120335711	120337430	+	0	NA	5' UTR (NM_001198665, exon 1 of 40)	5' UTR (NM_001198665, exon 1 of 40)	157	NM_015313	23365		NM_015313	ENSG00000196914	ARHGEF12	LARG|PRO2792	Rho guanine nucleotide exchange factor 12	protein-coding
79010	chr16	23851	23950	+	0	NA	intron (NR_130735, intron 1 of 1)	AluSz|SINE|Alu	984	NR_130735	100132169		NR_130735	ENSG00000231439	WASIR2	NCRNA00286A	WASH and IL9R antisense RNA 2	ncRNA
11473	chr1	90392841	90392950	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	-264855	NR_145742	109616984		NR_145742	ENSG00000199666	SNORD3G	-	small nucleolar RNA, C/D box 3G	snoRNA
186743	chr5	139304371	139305030	+	0	NA	intron (NM_001194956, intron 1 of 13)	intron (NM_001194956, intron 1 of 13)	10950	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
29582	chr10	71723921	71724600	+	0	NA	intron (NM_001171930, intron 28 of 30)	intron (NM_001171930, intron 28 of 30)	-4482	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
11325	chr1	89461871	89462230	+	0	NA	Intergenic	L2b|LINE|L2	54371	NR_003133	400759		NR_003133	ENSG00000290525	GBP1P1	LIMIT	guanylate binding protein 1 pseudogene 1	pseudo
189540	chr5	173917471	173918760	+	0	NA	intron (NM_001308191, intron 2 of 7)	intron (NM_001308191, intron 2 of 7)	25064	NM_001308193	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
104776	chr17	81714901	81715480	+	0	NA	intron (NM_012140, intron 2 of 10)	intron (NM_012140, intron 2 of 10)	2906	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
232123	chr9	133955121	133956180	+	0	NA	intron (NM_001134398, intron 1 of 29)	intron (NM_001134398, intron 1 of 29)	36674	NM_001134398	7410		NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding
136862	chr2	186590951	186591750	+	0	NA	intron (NM_001145000, intron 1 of 27)	intron (NM_001145000, intron 1 of 27)	1294	NM_002210	3685		NM_002210	ENSG00000138448	ITGAV	CD51|MSK8|VNRA|VTNR	integrin subunit alpha V	protein-coding
179135	chr4	169270671	169271380	+	0	NA	promoter-TSS (NM_020870)	promoter-TSS (NM_020870)	-69	NM_020870	57630		NM_020870	ENSG00000154447	SH3RF1	POSH|RNF142|SH3MD2	SH3 domain containing ring finger 1	protein-coding
146271	chr20	49051471	49051830	+	0	NA	intron (NM_001362762, intron 1 of 24)	L2a|LINE|L2	5338	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
126585	chr2	28763001	28763400	+	0	NA	intron (NM_206876, intron 2 of 8)	Charlie1a|DNA|hAT-Charlie	11370	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
156270	chr22	40420571	40421530	+	0	NA	exon (NM_001282662, exon 10 of 15)	exon (NM_001282662, exon 10 of 15)	42390	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
65110	chr14	44557251	44557350	+	0	NA	Intergenic	L1PA4|LINE|L1	49891	NR_135257	105370473		NR_135257	ENSG00000258747	LOC105370473	-	uncharacterized LOC105370473	ncRNA
157965	chr22	49814871	49815030	+	0	NA	intron (NM_001304808, intron 2 of 12)	intron (NM_001304808, intron 2 of 12)	9381	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
150802	chr21	43923671	43923830	+	0	NA	intron (NM_001369880, intron 1 of 8)	MER21B|LTR|ERVL	-1648	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
207344	chr7	44068001	44068350	+	0	NA	3' UTR (NM_001284313, exon 11 of 11)	3' UTR (NM_001284313, exon 11 of 11)	-2608	NM_000290	5224		NM_000290	ENSG00000164708	PGAM2	GSD10|PGAM-M|PGAMM	phosphoglycerate mutase 2	protein-coding
195584	chr6	37521701	37521900	+	0	NA	intron (NR_126057, intron 1 of 3)	intron (NR_126057, intron 1 of 3)	14452	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
106474	chr18	14174601	14175280	+	0	NA	Intergenic	Intergenic	-4157	NR_040113	440482		NM_001029999		ANKRD20A5P	ANKRD20A5	ankyrin repeat domain 20 family member A5, pseudogene	pseudo
40028	chr11	62675251	62675630	+	0	NA	Intergenic	Intergenic	3633	NM_001286077	51035		NM_015853	ENSG00000162191	UBXN1	2B28|SAKS1|UBXD10	UBX domain protein 1	protein-coding
29318	chr10	69353771	69354330	+	0	NA	intron (NM_033498, intron 5 of 20)	MER21C|LTR|ERVL	35203	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
91665	chr17	5526671	5527200	+	0	NA	intron (NM_014922, intron 12 of 15)	intron (NM_014922, intron 12 of 15)	-25929	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
233414	chr9	137582051	137582630	+	0	NA	3' UTR (NM_138462, exon 6 of 6)	3' UTR (NM_138462, exon 6 of 6)	-3415	NM_138778	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
74955	chr15	63813221	63813800	+	0	NA	intron (NM_003922, intron 1 of 77)	intron (NM_003922, intron 1 of 77)	20438	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
41726	chr11	66661371	66661530	+	0	NA	intron (NM_001198844, intron 2 of 2)	intron (NM_001198844, intron 2 of 2)	16437	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
229867	chr9	126472101	126472300	+	0	NA	intron (NM_033446, intron 7 of 9)	intron (NM_033446, intron 7 of 9)	-61696	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
184961	chr5	113293651	113293750	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	1238	NM_002387	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
173571	chr4	10111051	10111150	+	0	NA	intron (NM_017491, intron 2 of 14)	intron (NM_017491, intron 2 of 14)	5699	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
165764	chr3	105759421	105759800	+	0	NA	intron (NR_135806, intron 4 of 20)	MER52A|LTR|ERV1	107981	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
44364	chr11	102456171	102456330	+	0	NA	intron (NR_135053, intron 1 of 1)	AluSz6|SINE|Alu	3331	NR_135053	101928424		NR_135053	ENSG00000255337	TMEM123-DT	-	TMEM123 divergent transcript	ncRNA
71442	chr14	105682351	105683030	+	0	NA	Intergenic	Intergenic	-9883	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
106102	chr18	9157851	9158230	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	20477	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
149741	chr21	34405871	34406750	+	0	NA	Intergenic	Intergenic	-5238	NM_001364711	102723451		NM_001364711	ENSG00000277277	LOC102723451	FAM243B	family with sequence similarity 243 member B	protein-coding
92039	chr17	7491521	7492030	+	0	NA	intron (NM_000937, intron 1 of 29)	L2b|LINE|L2	7409	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
189273	chr5	172072471	172072830	+	0	NA	intron (NM_005990, intron 12 of 18)	L1MEf|LINE|L1	-66012	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
49301	chr12	21439051	21439550	+	0	NA	intron (NM_001350912, intron 1 of 11)	intron (NM_001350912, intron 1 of 11)	1385	NM_001350912	79912		NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
82111	chr16	14633841	14634780	+	0	NA	intron (NM_016561, intron 1 of 7)	intron (NM_016561, intron 1 of 7)	1359	NM_016561	51283		NM_016561	ENSG00000103429	BFAR	BAR|RNF47	bifunctional apoptosis regulator	protein-coding
49972	chr12	42096521	42097180	+	0	NA	intron (NM_173601, intron 7 of 7)	L1MC4a|LINE|L1	48024	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
234592	chrX	19789321	19789650	+	0	NA	intron (NM_001353892, intron 2 of 17)	MLT1B|LTR|ERVL-MaLR	10288	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
181248	chr5	39205371	39205980	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	13888	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
193621	chr6	30752501	30752700	+	0	NA	Intergenic	Intergenic	-8053	NM_003897	8870		NM_003897	ENSG00000137331	IER3	DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1	immediate early response 3	protein-coding
38482	chr11	45846051	45846150	+	0	NA	Intergenic	L2b|LINE|L2	-1018	NM_001127457	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
93555	chr17	19073351	19073880	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-9479	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
222452	chr8	139023171	139023400	+	0	NA	Intergenic	Intergenic	-109244	NM_152888	169044		NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding
13876	chr1	117932821	117933080	+	0	NA	intron (NM_006784, intron 1 of 26)	AluSz|SINE|Alu	3211	NM_006784	10885		NM_006784	ENSG00000065183	WDR3	DIP2|UTP12	WD repeat domain 3	protein-coding
208451	chr7	66930251	66930780	+	0	NA	intron (NM_017994, intron 1 of 6)	L2a|LINE|L2	9290	NM_017994	55069		NM_017994	ENSG00000106609	TMEM248	C7orf42	transmembrane protein 248	protein-coding
84392	chr16	30322901	30323100	+	0	NA	intron (NR_002453, intron 1 of 12)	AluSc8|SINE|Alu	12374	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
129109	chr2	65131921	65132480	+	0	NA	Intergenic	Intergenic	-1899	NM_015543	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
8918	chr1	43988751	43989250	+	0	NA	intron (NM_003780, intron 6 of 6)	intron (NM_003780, intron 6 of 6)	-2596	NM_001349127	149473		NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding
133430	chr2	119265251	119265430	+	0	NA	3' UTR (NM_182915, exon 6 of 6)	3' UTR (NM_182915, exon 6 of 6)	-16269	NR_046721	100874111		NR_046721	ENSG00000229867	STEAP3-AS1	-	STEAP3 antisense RNA 1	ncRNA
51604	chr12	52865201	52865650	+	0	NA	Intergenic	Intergenic	-16431	NM_173352	196374		NM_173352	ENSG00000170423	KRT78	CK-78|K5B|K78|Kb40	keratin 78	protein-coding
90162	chr17	220321	220800	+	0	NA	intron (NM_006987, intron 7 of 9).2	intron (NM_006987, intron 7 of 9).2	-33309	NR_104420	100506371		NR_104420		LINC02091	-	long intergenic non-protein coding RNA 2091	ncRNA
159740	chr3	15861601	15861800	+	0	NA	Intergenic	Intergenic	-1886	NM_001349279	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
82818	chr16	21487101	21487600	+	0	NA	intron (NR_027155, intron 1 of 28)	intron (NR_027155, intron 1 of 28)	-14176	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
156543	chr22	41431601	41432330	+	0	NA	Intergenic	Intergenic	14836	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
86783	chr16	67800451	67800950	+	0	NA	intron (NM_001320238, intron 1 of 12)	intron (NM_001320238, intron 1 of 12)	5860	NM_020850	57610		NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
237327	chrX	118498471	118498630	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	2641	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
107329	chr18	45667851	45667950	+	0	NA	exon (NM_007163, exon 14 of 20)	exon (NM_007163, exon 14 of 20)	52424	NM_007163	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
77201	chr15	80856721	80857080	+	0	NA	intron (NM_018689, intron 1 of 28)	intron (NM_018689, intron 1 of 28)	-14827	NR_030393	693132		NR_030393	ENSG00000208003	MIR549A	MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a	microRNA 549a	ncRNA
100741	chr17	63930401	63930600	+	0	NA	intron (NM_001039933, intron 2 of 5)	intron (NM_001039933, intron 2 of 5)	1831	NM_021602	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
229438	chr9	121372701	121373330	+	0	NA	Intergenic	Intergenic	-2711	NM_001270527	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
142582	chr20	5540571	5541200	+	0	NA	Intergenic	L1MD|LINE|L1	-30883	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
43481	chr11	78228421	78228680	+	0	NA	intron (NM_080491, intron 3 of 9)	intron (NM_080491, intron 3 of 9)	39631	NM_020798	57558		NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding
86128	chr16	57681221	57681480	+	0	NA	intron (NM_170776, intron 8 of 11)	(TG)n|Simple_repeat|Simple_repeat	13044	NM_001308360	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
182357	chr5	59809951	59810280	+	0	NA	intron (NM_001364600, intron 3 of 7)	intron (NM_001364600, intron 3 of 7)	-41267	NM_001197218	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
153039	chr22	23261971	23262330	+	0	NA	promoter-TSS (NR_033408)	promoter-TSS (NR_033408)	-617	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
221091	chr8	117494951	117495050	+	0	NA	Intergenic	L1PA14|LINE|L1	-25713	NM_001282986	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
183269	chr5	76467121	76467580	+	0	NA	intron (NM_006633, intron 2 of 35)	L1MB7|LINE|L1	64065	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
237243	chrX	110004401	110004600	+	0	NA	intron (NM_001353849, intron 2 of 7)	intron (NM_001353849, intron 2 of 7)	1386	NM_032227	84187		NM_017698	ENSG00000157600	TMEM164	bB360B22.3	transmembrane protein 164	protein-coding
33350	chr10	117162421	117162680	+	0	NA	intron (NR_121650, intron 1 of 1)	intron (NR_121650, intron 1 of 1)	5224	NR_037436	100500893		NR_037436	ENSG00000266782	MIR3663	-	microRNA 3663	ncRNA
32830	chr10	110011751	110012350	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-3669	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
56000	chr12	110300551	110301030	+	0	NA	intron (NM_170665, intron 5 of 19)	intron (NM_170665, intron 5 of 19)	19543	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
196552	chr6	44067471	44067630	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	7102	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
52406	chr12	55748701	55749180	+	0	NA	exon (NM_005811, exon 2 of 3)	exon (NM_005811, exon 2 of 3)	5818	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
6471	chr1	28326871	28327430	+	0	NA	Intergenic	L2b|LINE|L2	-1890	NM_001127350	54797		NM_017638	ENSG00000130772	MED18	SRB5|p28b	mediator complex subunit 18	protein-coding
108275	chr18	63298651	63299250	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	20819	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
148057	chr20	63253321	63254450	+	0	NA	promoter-TSS (NM_001363718)	promoter-TSS (NM_001363718)	-93	NR_024389	100192386		NR_024389	ENSG00000275620	FLJ16779	-	uncharacterized LOC100192386	ncRNA
144917	chr20	36970571	36971080	+	0	NA	Intergenic	MER50|LTR|ERV1	-19117	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
86821	chr16	67879821	67880080	+	0	NA	exon (NM_014329, exon 16 of 29)	exon (NM_014329, exon 16 of 29)	-4935	NM_001348682	123904		NM_198443	ENSG00000188038	NRN1L	MRCC2446|UNQ2446|cpg15-2	neuritin 1 like	protein-coding
20166	chr1	192811651	192812200	+	0	NA	3' UTR (NM_002923, exon 5 of 5)	3' UTR (NM_002923, exon 5 of 5)	2886	NM_002923	5997		NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G protein signaling 2	protein-coding
75284	chr15	65086401	65087230	+	0	NA	Intergenic	Intergenic	10069	NM_001101362	390594		NM_001101362	ENSG00000234438	KBTBD13	HCG1645727|NEM6	kelch repeat and BTB domain containing 13	protein-coding
182851	chr5	69493571	69493900	+	0	NA	intron (NM_001205254, intron 1 of 8)	CpG	945	NM_001205254	100506658		NM_002538	ENSG00000197822	OCLN	BLCPMG|PPP1R115|PTORCH1	occludin	protein-coding
163432	chr3	50577651	50577750	+	0	NA	intron (NM_001377426, intron 6 of 10)	intron (NM_001377426, intron 6 of 10)	-6673	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
217873	chr8	37852701	37853300	+	0	NA	Intergenic	Intergenic	-3139	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
5706	chr1	26378121	26379000	+	0	NA	Intergenic	Intergenic	-5766	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
8742	chr1	42696551	42696650	+	0	NA	intron (NR_132737, intron 3 of 6)	intron (NR_132737, intron 3 of 6)	13464	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
192099	chr6	16700311	16701430	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	59314	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
237821	chrX	129979451	129981250	+	0	NA	promoter-TSS (NM_001184772)	promoter-TSS (NM_001184772)	-629	NM_001184772	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
100412	chr17	60525571	60526900	+	0	NA	promoter-TSS (NM_001282476)	promoter-TSS (NM_001282476)	5	NM_001282476	10513		NM_006380	ENSG00000062725	APPBP2	APP-BP2|HS.84084|PAT1	amyloid beta precursor protein binding protein 2	protein-coding
115931	chr19	16625471	16626230	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	2354	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
147782	chr20	62579951	62580250	+	0	NA	Intergenic	Intergenic	15188	NR_029676	406923		NR_029676	ENSG00000284508	MIR133A2	MIRN133A2|mir-133a-2	microRNA 133a-2	ncRNA
110858	chr19	2610751	2611580	+	0	NA	intron (NM_052847, intron 2 of 4)	CpG	-19550	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
11095	chr1	85297771	85299000	+	0	NA	Intergenic	Intergenic	-21753	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
18576	chr1	163361401	163361680	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	39586	NM_031423	83540		NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	NUF2 component of NDC80 kinetochore complex	protein-coding
40398	chr11	64036421	64037630	+	0	NA	intron (NM_001384466, intron 1 of 2)	intron (NM_001384466, intron 1 of 2)	343	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
151128	chr21	44891901	44892200	+	0	NA	intron (NM_001127491, intron 10 of 15)	intron (NM_001127491, intron 10 of 15)	-18147	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
98855	chr17	48457151	48457850	+	0	NA	intron (NR_110804, intron 5 of 5)	intron (NR_110804, intron 5 of 5)	12667	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
192142	chr6	16776701	16776900	+	0	NA	Intergenic	Intergenic	-15310	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
234747	chrX	22748551	22748650	+	0	NA	intron (NR_073010, intron 3 of 11)	intron (NR_073010, intron 3 of 11)	-251360	NM_182699	168400		NM_182699	ENSG00000184735	DDX53	CAGE|CT26	DEAD-box helicase 53	protein-coding
104749	chr17	81685271	81685700	+	0	NA	intron (NM_004712, intron 1 of 21)	intron (NM_004712, intron 1 of 21)	1474	NM_004712	9146		NM_004712	ENSG00000185359	HGS	HRS	hepatocyte growth factor-regulated tyrosine kinase substrate	protein-coding
223071	chr8	143398821	143399380	+	0	NA	Intergenic	Intergenic	-18579	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
88707	chr16	85898621	85899380	+	0	NA	promoter-TSS (NM_002163)	promoter-TSS (NM_002163)	-162	NM_002163	3394		NM_002163	ENSG00000140968	IRF8	H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8	interferon regulatory factor 8	protein-coding
125634	chr2	19361001	19361910	+	0	NA	Intergenic	CpG	-2832	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
5534	chr1	25813301	25813530	+	0	NA	intron (NM_206926, intron 9 of 11)	L2b|LINE|L2	-6491	NM_001099627	56181		NM_019557	ENSG00000117640	MTFR1L	FAM54B|HYST1888|MST116|MSTP116	mitochondrial fission regulator 1 like	protein-coding
196635	chr6	44275571	44276350	+	0	NA	exon (NM_001137560, exon 3 of 3)	exon (NM_001137560, exon 3 of 3)	5510	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
11060	chr1	85061671	85062950	+	0	NA	promoter-TSS (NM_001288563)	promoter-TSS (NM_001288563)	12	NM_001288563	126820		NM_145172	ENSG00000162643	DNAI3	DIC3|NYD-SP29|WDR63	dynein axonemal intermediate chain 3	protein-coding
24633	chr1	246689501	246689900	+	0	NA	Intergenic	LTR41|LTR|ERVL	-34709	NM_016002	51097		NM_016002	ENSG00000143653	SCCPDH	CGI-49|NET11	saccharopine dehydrogenase (putative)	protein-coding
127290	chr2	38738711	38739600	+	0	NA	Intergenic	AluSz|SINE|Alu	12206	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
197197	chr6	63588121	63588450	+	0	NA	Intergenic	LTR33|LTR|ERVL	15805	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
3210	chr1	13760221	13760480	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	10935	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
42235	chr11	68090771	68090930	+	0	NA	intron (NM_001376219, intron 2 of 12)	intron (NM_001376219, intron 2 of 12)	30538	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
86056	chr16	57581251	57581350	+	0	NA	Intergenic	Intergenic	-38438	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
118544	chr19	36119471	36119630	+	0	NA	intron (NR_155756, intron 2 of 5)	L2a|LINE|L2	3780	NM_001300971	1155		NM_001281	ENSG00000105254	TBCB	CG22|CKAP1|CKAPI	tubulin folding cofactor B	protein-coding
119762	chr19	41291521	41291780	+	0	NA	intron (NM_144732, intron 7 of 14)	intron (NM_144732, intron 7 of 14)	-18522	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
182965	chr5	71451951	71452850	+	0	NA	Intergenic	Intergenic	-3251	NM_018429	55814		NM_018429	ENSG00000145734	BDP1	DFNB112|HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
16664	chr1	155179221	155179630	+	0	NA	intron (NR_046329, intron 9 of 11)	MIR3|SINE|MIR	4671	NM_001256601	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
149412	chr21	31185751	31186500	+	0	NA	intron (NM_001353694, intron 14 of 27)	intron (NM_001353694, intron 14 of 27)	-25185	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
89078	chr16	88465871	88466850	+	0	NA	intron (NM_153813, intron 1 of 9)	MIRb|SINE|MIR	-2558	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
41203	chr11	65651901	65653690	+	0	NA	TTS (NM_001243985)	TTS (NM_001243985)	3603	NR_039709	100616284		NR_039709	ENSG00000265874	MIR4489	mir-4489	microRNA 4489	ncRNA
175180	chr4	56386621	56388650	+	0	NA	promoter-TSS (NM_001323893)	promoter-TSS (NM_001323893)	-127	NM_001286671	132949		NM_181806	ENSG00000157426	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
195036	chr6	35481171	35481530	+	0	NA	intron (NM_003214, intron 3 of 12)	intron (NM_003214, intron 3 of 12)	10842	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
211456	chr7	105087401	105087800	+	0	NA	intron (NM_182931, intron 13 of 26)	AluSx3|SINE|Alu	73395	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
34477	chr10	132505101	132505500	+	0	NA	Intergenic	Intergenic	31623	NR_158224	107984282		NR_158224		LOC107984282	-	uncharacterized LOC107984282	ncRNA
214175	chr7	144833821	144834230	+	0	NA	intron (NR_146934, intron 1 of 6)	AluJb|SINE|Alu	1915	NR_146935	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
68471	chr14	87952271	87953080	+	0	NA	intron (NM_001201401, intron 9 of 15)	intron (NM_001201401, intron 9 of 15)	40507	NM_000153	2581		NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
96324	chr17	40017201	40017600	+	0	NA	non-coding (NR_168490, exon 3 of 3)	non-coding (NR_168490, exon 3 of 3)	1960	NM_001178147	1440		NM_000759	ENSG00000108342	CSF3	C17orf33|CSF3OS|GCSF	colony stimulating factor 3	protein-coding
173820	chr4	18026351	18026780	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-4690	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
125733	chr2	20661121	20662900	+	0	NA	Intergenic	Intergenic	-5134	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
82450	chr16	16363801	16364000	+	0	NA	intron (NR_146336, intron 20 of 34)	CpG	-4976	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
57689	chr12	122844571	122845400	+	0	NA	intron (NM_001303097, intron 1 of 17)	MIRb|SINE|MIR	9528	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
152153	chr22	20015071	20015650	+	0	NA	intron (NM_001670, intron 1 of 19)	intron (NM_001670, intron 1 of 19)	1463	NM_001670	421		NM_001670	ENSG00000099889	ARVCF	-	ARVCF delta catenin family member	protein-coding
27977	chr10	42768151	42768450	+	0	NA	intron (NR_134498, intron 1 of 1)	intron (NR_134498, intron 1 of 1)	-13097	NR_136644	283028		NR_136644		LOC283028	-	uncharacterized LOC283028	ncRNA
169161	chr3	156606021	156606300	+	0	NA	Intergenic	Intergenic	-50960	NM_001308197	6747		NM_007107	ENSG00000114850	SSR3	TRAPG	signal sequence receptor subunit 3	protein-coding
65451	chr14	51741721	51742050	+	0	NA	Intergenic	SATR1|Satellite|Satellite	24602	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
61459	chr13	52158751	52159730	+	0	NA	5' UTR (NM_152720, exon 1 of 16)	5' UTR (NM_152720, exon 1 of 16)	295	NM_152720	4752		NM_002498	ENSG00000136098	NEK3	HSPK36	NIMA related kinase 3	protein-coding
145144	chr20	38827801	38828280	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	22343	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
24354	chr1	240575971	240576630	+	0	NA	intron (NM_022469, intron 1 of 1)	intron (NM_022469, intron 1 of 1)	35855	NM_022469	64388		NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC|STHAG9	gremlin 2, DAN family BMP antagonist	protein-coding
55122	chr12	98595351	98596150	+	0	NA	exon (NM_002635, exon 3 of 8)	exon (NM_002635, exon 3 of 8)	2064	NM_213611	5250		NM_002635	ENSG00000075415	SLC25A3	OK/SW-cl.48|PHC|PTP|PiC	solute carrier family 25 member 3	protein-coding
204724	chr7	5552051	5552350	+	0	NA	Intergenic	Intergenic	-21599	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
171591	chr3	197033921	197034180	+	0	NA	Intergenic	Intergenic	-4233	NM_005929	4241		NM_005929	ENSG00000163975	MELTF	CD228|MAP97|MFI2|MTF1|MTf	melanotransferrin	protein-coding
58535	chr12	132235101	132235300	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-29172	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
180969	chr5	35768071	35768230	+	0	NA	intron (NM_024867, intron 26 of 36)	intron (NM_024867, intron 26 of 36)	-88741	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
67877	chr14	74294471	74294630	+	0	NA	intron (NR_148467, intron 4 of 14)	intron (NR_148467, intron 4 of 14)	8384	NM_020324	5826		NM_005050	ENSG00000119688	ABCD4	ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L	ATP binding cassette subfamily D member 4	protein-coding
229361	chr9	120974921	120975350	+	0	NA	intron (NM_001735, intron 29 of 40)	intron (NM_001735, intron 29 of 40)	-22304	NR_148450	110599590		NR_148450		C5-OT1	C5T1LNCRNA	C5 3' UTR overlapping transcript 1	ncRNA
165286	chr3	75672151	75672550	+	0	NA	promoter-TSS (NR_040005)	promoter-TSS (NR_040005)	-41	NR_040004	401074		NR_040004	ENSG00000242516	LINC00960	-	long intergenic non-protein coding RNA 960	ncRNA
80922	chr16	3799071	3799230	+	0	NA	intron (NM_004380, intron 3 of 30)	L1MB7|LINE|L1	80970	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
235348	chrX	44265271	44265930	+	0	NA	intron (NM_025184, intron 3 of 14)	intron (NM_025184, intron 3 of 14)	78072	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
97931	chr17	45158351	45158980	+	0	NA	Intergenic	Intergenic	-1509	NM_001303437	124790		NM_144608	ENSG00000168517	HEXIM2	L3	HEXIM P-TEFb complex subunit 2	protein-coding
72870	chr15	40279201	40280380	+	0	NA	3' UTR (NM_001190479, exon 1 of 1)	3' UTR (NM_001190479, exon 1 of 1)	2796	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
197222	chr6	64324051	64324550	+	0	NA	intron (NM_001292009, intron 29 of 43)	L1P4|LINE|L1	517464	NR_157848	112935969		NR_157848	ENSG00000236345	SCAT8	EYS-AS1	S-phase cancer associated transcript 8	ncRNA
183137	chr5	74944051	74944150	+	0	NA	Intergenic	MER39|LTR|ERV1	-77134	NM_015566	26049		NM_015566	ENSG00000198780	FAM169A	SLAP|SLAP75	family with sequence similarity 169 member A	protein-coding
32728	chr10	104291101	104292180	+	0	NA	intron (NM_183239, intron 5 of 6)	intron (NM_183239, intron 5 of 6)	16474	NM_001191015	119391		NM_183239	ENSG00000065621	GSTO2	GSTO 2-2|bA127L20.1	glutathione S-transferase omega 2	protein-coding
115759	chr19	16327901	16328800	+	0	NA	3' UTR (NM_016270, exon 3 of 3)	3' UTR (NM_016270, exon 3 of 3)	3524	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
80893	chr16	3718801	3720250	+	0	NA	Intergenic	AluSp|SINE|Alu	-2001	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
27624	chr10	32941671	32941830	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	-6192	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
203395	chr6	170655551	170655650	+	0	NA	Intergenic	Intergenic	-70908	NM_001199461	5134		NM_002598	ENSG00000071994	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
222920	chr8	142935251	142935750	+	0	NA	Intergenic	MER51E|LTR|ERV1	-17657	NM_000498	1585		NM_000498	ENSG00000179142	CYP11B2	ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo	cytochrome P450 family 11 subfamily B member 2	protein-coding
206426	chr7	32691871	32692450	+	0	NA	intron (NR_036680, intron 2 of 16)	AluJo|SINE|Alu	27008	NR_036680	100129460		NR_036680		DPY19L1P1	-	DPY19L1 pseudogene 1	pseudo
77886	chr15	89089851	89090200	+	0	NA	intron (NM_152924, intron 1 of 10)	MIR3|SINE|MIR	1569	NM_152924	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
37519	chr11	18604551	18604850	+	0	NA	TTS (NM_001355570)	TTS (NM_001355570)	4911	NR_038360	100506540		NM_001355570	ENSG00000247595	MISFA	Kastor|Polluks|SPTY2D1-AS1|SPTY2D1OS	mitochondrial sheath formation associated	protein-coding
47587	chr12	4808951	4809450	+	0	NA	promoter-TSS (NM_002235)	promoter-TSS (NM_002235)	24	NM_002235	3742		NM_002235	ENSG00000151079	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel subfamily A member 6	protein-coding
32183	chr10	101586801	101587000	+	0	NA	intron (NM_001174084, intron 2 of 8)	intron (NM_001174084, intron 2 of 8)	1357	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
95875	chr17	38862501	38863100	+	0	NA	Intergenic	AluSp|SINE|Alu	-7059	NM_001271608	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
178487	chr4	149848651	149848750	+	0	NA	Intergenic	L1PA3|LINE|L1	-32857	NM_001378178	285423		NM_001363507	ENSG00000234828	IQCM	-	IQ motif containing M	protein-coding
96968	chr17	42248051	42249300	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	27716	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
190095	chr5	177836201	177836750	+	0	NA	Intergenic	Intergenic	-26968	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
15556	chr1	150546451	150546700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2833	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
87795	chr16	75462501	75463310	+	0	NA	intron (NM_001304998, intron 1 of 2)	L1MC4|LINE|L1	1538	NM_001304997	124491		NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
4128	chr1	19326801	19328000	+	0	NA	exon (NM_001287531, exon 7 of 8)	exon (NM_001287531, exon 7 of 8)	15074	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
192393	chr6	24773501	24773780	+	0	NA	Intergenic	L1MC5|LINE|L1	-1297	NM_001251990	51053		NM_015895	ENSG00000112312	GMNN	Gem|MGORS6	geminin DNA replication inhibitor	protein-coding
204623	chr7	5382221	5382850	+	0	NA	intron (NM_001080495, intron 5 of 29)	intron (NM_001080495, intron 5 of 29)	41011	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
228894	chr9	112752921	112753380	+	0	NA	intron (NM_001012994, intron 1 of 8)	MLT1F|LTR|ERVL-MaLR	2390	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
79641	chr16	1160901	1161300	+	0	NA	intron (NM_021098, intron 2 of 34)	intron (NM_021098, intron 2 of 34)	7859	NM_001005407	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
213638	chr7	139673451	139673550	+	0	NA	intron (NM_022740, intron 2 of 14)	intron (NM_022740, intron 2 of 14)	104498	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
124272	chr19	57802351	57802650	+	0	NA	Intergenic	Intergenic	12413	NM_024762	79818		NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
232770	chr9	136677371	136678130	+	0	NA	intron (NM_006412, intron 1 of 5)	intron (NM_006412, intron 1 of 5)	7148	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
84022	chr16	29472001	29472900	+	0	NA	Intergenic	Intergenic	-4872	NR_002556	388242		NR_002556	ENSG00000290678	LOC388242	-	SAGA complex associated factor 29 pseudogene	pseudo
166860	chr3	123447851	123448750	+	0	NA	exon (NM_001378259, exon 1 of 22)	exon (NM_001378259, exon 1 of 22)	790	NM_001378259	111		NM_183357	ENSG00000173175	ADCY5	AC5|DSKOD|FDFM	adenylate cyclase 5	protein-coding
157357	chr22	44692271	44692700	+	0	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	-9713	NM_181334	553158		NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
125116	chr2	9779621	9780750	+	0	NA	Intergenic	Intergenic	-63257	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
54462	chr12	91977801	91978880	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	163373	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
218529	chr8	53846171	53846530	+	0	NA	Intergenic	Intergenic	-3039	NM_213619	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
171417	chr3	196217821	196218280	+	0	NA	intron (NM_152672, intron 2 of 8)	intron (NM_152672, intron 2 of 8)	1516	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
87760	chr16	75252501	75252700	+	0	NA	promoter-TSS (NM_001170717)	promoter-TSS (NM_001170717)	-976	NM_001170717	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
225610	chr9	36188701	36189050	+	0	NA	Intergenic	Intergenic	-1981	NM_001184762	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
36711	chr11	8978251	8978600	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-13414	NM_001286095	56674		NM_020644	ENSG00000175348	TMEM9B	C11orf15	TMEM9 domain family member B	protein-coding
40156	chr11	62865571	62865930	+	0	NA	intron (NM_001012664, intron 1 of 9)	ERV3-16A3_I-int|LTR|ERVL	9641	NM_001012664	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
199883	chr6	127819701	127819900	+	0	NA	intron (NM_001010923, intron 3 of 5).2	L1MCa|LINE|L1	35388	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
197179	chr6	63525271	63525430	+	0	NA	intron (NM_001385258, intron 2 of 8)	LTR50|LTR|ERVL	3604	NM_001385257	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
201430	chr6	147203401	147204980	+	0	NA	promoter-TSS (NM_001127715)	promoter-TSS (NM_001127715)	-168	NM_001127715	134957		NM_139244	ENSG00000164506	STXBP5	LGL3|LLGL3|Nbla04300	syntaxin binding protein 5	protein-coding
164344	chr3	58012871	58013430	+	0	NA	intron (NM_001164319, intron 1 of 44)	intron (NM_001164319, intron 1 of 44)	4728	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
26288	chr10	14937421	14938080	+	0	NA	intron (NR_146960, intron 4 of 13)	AluSx1|SINE|Alu	16346	NR_146961	64421		NM_022487	ENSG00000152457	DCLRE1C	A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C	DNA cross-link repair 1C	protein-coding
50473	chr12	47771971	47772330	+	0	NA	Intergenic	Intergenic	-1088	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
50325	chr12	46831201	46831800	+	0	NA	Intergenic	CpG	-5503	NM_001143824	55089		NM_018018	ENSG00000139209	SLC38A4	ATA3|NAT3|PAAT|SNAT4	solute carrier family 38 member 4	protein-coding
31821	chr10	99392371	99392930	+	0	NA	non-coding (NR_144311, exon 11 of 11)	non-coding (NR_144311, exon 11 of 11)	37974	NM_002079	2805		NM_002079	ENSG00000120053	GOT1	AST|AST1|ASTQTL1|GIG18|SGOT|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1	protein-coding
35829	chr11	2270701	2271530	+	0	NA	promoter-TSS (NM_005170)	promoter-TSS (NM_005170)	-527	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
119598	chr19	40748221	40749030	+	0	NA	intron (NR_148550, intron 2 of 5)	intron (NR_148550, intron 2 of 5)	1852	NR_148549	284325		NM_198476	ENSG00000188493	ACTMAP	C19orf54	actin maturation protease	protein-coding
159518	chr3	14413151	14413450	+	0	NA	intron (NR_103507, intron 1 of 13)	intron (NR_103507, intron 1 of 13)	10694	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
72025	chr15	28107301	28108500	+	0	NA	Intergenic	CpG	-8585	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
94008	chr17	25383751	25383850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1705441	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
82617	chr16	18921101	18921300	+	0	NA	intron (NM_015092, intron 1 of 62)	intron (NM_015092, intron 1 of 62)	5208	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
26939	chr10	26488471	26489130	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	50459	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
23622	chr1	230270451	230271080	+	0	NA	intron (NM_001291866, intron 14 of 15)	intron (NM_001291866, intron 14 of 15)	155567	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
216505	chr8	20261271	20261430	+	0	NA	intron (NM_021020, intron 1 of 3)	intron (NM_021020, intron 1 of 3)	12185	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
88219	chr16	81850071	81850230	+	0	NA	intron (NM_002661, intron 2 of 32)	L1MC5a|LINE|L1	70859	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
57381	chr12	121807621	121808200	+	0	NA	intron (NM_001353345, intron 4 of 16)	intron (NM_001353345, intron 4 of 16)	3901	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
162524	chr3	48595021	48596230	+	0	NA	promoter-TSS (NM_000094)	promoter-TSS (NM_000094)	-296	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
31128	chr10	89416251	89416350	+	0	NA	intron (NM_012420, intron 1 of 1)	(ACA)n|Simple_repeat|Simple_repeat	1732	NM_012420	24138		NM_012420	ENSG00000152778	IFIT5	ISG58|P58|RI58	interferon induced protein with tetratricopeptide repeats 5	protein-coding
195262	chr6	36439851	36440600	+	0	NA	intron (NM_152990, intron 1 of 4)	intron (NM_152990, intron 1 of 4)	-2542	NM_001286580	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
29053	chr10	67848371	67848680	+	0	NA	Intergenic	AluSq2|SINE|Alu	-10337	NM_021800	56521		NM_021800	ENSG00000108176	DNAJC12	HPANBH4|JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
95020	chr17	32442701	32443200	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-1560	NM_002815	5717		NM_002815	ENSG00000108671	PSMD11	Rpn6|S9|p44.5	proteasome 26S subunit, non-ATPase 11	protein-coding
192077	chr6	16659351	16660400	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	100309	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
64584	chr14	24801621	24801700	+	0	NA	Intergenic	Intergenic	-167470	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
49470	chr12	25186451	25186550	+	0	NA	intron (NM_001204102, intron 2 of 16)	Charlie2b|DNA|hAT-Charlie	8660	NR_147909	55259		NM_018272	ENSG00000118307	DNAI7	CASC1|CFAP94|LAS1|PPP1R54	dynein axonemal intermediate chain 7	protein-coding
13366	chr1	113880371	113881180	+	0	NA	3' UTR (NM_001010922, exon 4 of 4)	3' UTR (NM_001010922, exon 4 of 4)	6806	NM_001010922	440603		NM_001010922	ENSG00000188761	BCL2L15	Bfk|C1orf178	BCL2 like 15	protein-coding
17640	chr1	157135901	157136600	+	0	NA	intron (NM_005240, intron 2 of 3)	intron (NM_005240, intron 2 of 3)	2145	NM_001145312	2117		NM_005240	ENSG00000117036	ETV3	METS|PE-1|PE1	ETS variant transcription factor 3	protein-coding
15752	chr1	151144501	151144930	+	0	NA	intron (NM_001178061, intron 1 of 19)	intron (NM_001178061, intron 1 of 19)	1916	NM_030913	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
31783	chr10	98261271	98261430	+	0	NA	intron (NM_032211, intron 3 of 14)	intron (NM_032211, intron 3 of 14)	6844	NM_032211	84171		NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
205101	chr7	6789171	6789930	+	0	NA	intron (NM_173565, intron 17 of 20)	intron (NM_173565, intron 17 of 20)	35441	NM_173565	222967		NM_173565	ENSG00000155026	RSPH10B	-	radial spoke head 10 homolog B	protein-coding
43790	chr11	86288071	86288380	+	0	NA	Intergenic	AluJo|SINE|Alu	9892	NR_106813	102465452		NR_106813	ENSG00000283744	MIR6755	hsa-mir-6755	microRNA 6755	ncRNA
71940	chr15	23041371	23042130	+	0	NA	Intergenic	Intergenic	-2077	NM_001102610	114791		NM_052903	ENSG00000275835	TUBGCP5	GCP5	tubulin gamma complex component 5	protein-coding
210018	chr7	93429671	93430080	+	0	NA	intron (NM_001164737, intron 15 of 15)	intron (NM_001164737, intron 15 of 15)	52980	NR_030388	724023		NR_030388	ENSG00000208014	MIR653	MIRN653|hsa-mir-653|mir-653	microRNA 653	ncRNA
218390	chr8	46692251	46692350	+	0	NA	Intergenic	L1P1|LINE|L1	-74657	NR_146077	389652		NR_146077	ENSG00000290398	ASNSP1	ASNSL1	ASNS pseudogene 1	pseudo
181267	chr5	39264321	39264800	+	0	NA	intron (NM_001243093, intron 1 of 18)	L2b|LINE|L2	6089	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
42058	chr11	67470901	67471100	+	0	NA	Intergenic	AluJo|SINE|Alu	-1749	NM_001078650	80194		NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding
90908	chr17	2510221	2510480	+	0	NA	intron (NM_024086, intron 1 of 9)	L1MA4A|LINE|L1	1538	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
147807	chr20	62650171	62650550	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	7857	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
106285	chr18	12708271	12708630	+	0	NA	intron (NM_147163, intron 2 of 6)	AluSp|SINE|Alu	5408	NM_020232	56984		NM_020232	ENSG00000128789	PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|PRAAS4|TNFSF5IP1	proteasome assembly chaperone 2	protein-coding
110970	chr19	2952921	2953400	+	0	NA	Intergenic	LTR43B|LTR|ERV1	-8189	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
62894	chr13	110811871	110812230	+	0	NA	non-coding (NR_135280, exon 1 of 1)	non-coding (NR_135280, exon 1 of 1)	1034	NR_135280	283486		NR_135280	ENSG00000259831	LINC00567	-	long intergenic non-protein coding RNA 567	ncRNA
44874	chr11	114246401	114246600	+	0	NA	intron (NM_001354751, intron 5 of 6)	intron (NM_001354751, intron 5 of 6)	-11306	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
151037	chr21	44626201	44627000	+	0	NA	promoter-TSS (NM_198690)	promoter-TSS (NM_198690)	-493	NM_198690	386676		NM_198690	ENSG00000221837	KRTAP10-9	KAP10.9|KAP18.9|KRTAP18-9	keratin associated protein 10-9	protein-coding
124129	chr19	55677101	55677530	+	0	NA	intron (NM_001130071, intron 1 of 10)	MIR|SINE|MIR	690	NM_001130071	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
139065	chr2	218854701	218854900	+	0	NA	Intergenic	Intergenic	-5005	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
78743	chr15	98858701	98859100	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	74474	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
5164	chr1	24924891	24925900	+	0	NA	intron (NM_001031680, intron 3 of 5)	MIR3|SINE|MIR	4881	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
198721	chr6	108176251	108176650	+	0	NA	intron (NM_001286102, intron 3 of 8)	CpG	8427	NM_001286102	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
2922	chr1	11729851	11730680	+	0	NA	Intergenic	(GCACAT)n|Simple_repeat|Simple_repeat	-5820	NM_001040194	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
30278	chr10	75176021	75176330	+	0	NA	exon (NM_001174156, exon 5 of 6)	exon (NM_001174156, exon 5 of 6)	-33979	NM_001324087	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
43765	chr11	86224701	86224900	+	0	NA	Intergenic	L1PA13|LINE|L1	-19584	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
38980	chr11	47578551	47580080	+	0	NA	promoter-TSS (NM_001318722)	promoter-TSS (NM_001318722)	241	NM_004551	4722		NM_004551	ENSG00000213619	NDUFS3	CI-30|MC1DN8	NADH:ubiquinone oxidoreductase core subunit S3	protein-coding
93626	chr17	19162621	19163350	+	0	NA	promoter-TSS (NR_160285).2	promoter-TSS (NR_160285).2	-361	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
216164	chr8	11707771	11708000	+	0	NA	5' UTR (NM_002052, exon 2 of 7)	5' UTR (NM_002052, exon 2 of 7)	2523	NR_132779	106635531		NR_132779		SNORA99	-	small nucleolar RNA, H/ACA box 99	snoRNA
154611	chr22	36302621	36303230	+	0	NA	intron (NM_002473, intron 19 of 40)	intron (NM_002473, intron 19 of 40)	-16018	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
114691	chr19	13117881	13120180	+	0	NA	intron (NM_052876, intron 1 of 5)	intron (NM_052876, intron 1 of 5)	766	NM_052876	112939		NM_052876	ENSG00000160877	NACC1	BEND8|BTBD14B|BTBD30|NAC-1|NAC1|NECFM	nucleus accumbens associated 1	protein-coding
67169	chr14	68795201	68796550	+	0	NA	intron (NM_001244701, intron 1 of 2)	CpG	368	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
22994	chr1	226108951	226109130	+	0	NA	Intergenic	AluJr|SINE|Alu	25465	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
235861	chrX	50580051	50580230	+	0	NA	Intergenic	Intergenic	-109315	NM_001013742	139189		NM_001013742	ENSG00000274588	DGKK	-	diacylglycerol kinase kappa	protein-coding
229848	chr9	126302001	126302240	+	0	NA	Intergenic	Intergenic	-24709	NM_033446	89853		NM_033446	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
147586	chr20	61886951	61887300	+	0	NA	intron (NM_001794, intron 7 of 15)	intron (NM_001794, intron 7 of 15)	66537	NR_031658	100302168		NR_031658	ENSG00000284193	MIR1257	MIRN1257|hsa-mir-1257	microRNA 1257	ncRNA
142264	chr20	3169901	3170380	+	0	NA	intron (NM_001282533, intron 1 of 5)	intron (NM_001282533, intron 1 of 5)	3409	NM_001365618	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
102790	chr17	76379771	76380030	+	0	NA	Intergenic	Intergenic	-3304	NM_001355139	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
45402	chr11	118341751	118343590	+	0	NA	promoter-TSS (NM_000732)	promoter-TSS (NM_000732)	35	NM_000732	915		NM_000732	ENSG00000167286	CD3D	CD3-DELTA|CD3DELTA|IMD19|T3D	CD3 delta subunit of T-cell receptor complex	protein-coding
236006	chrX	54786901	54787280	+	0	NA	intron (NM_198510, intron 5 of 12)	intron (NM_198510, intron 5 of 12)	11165	NM_198510	347365		NM_198510	ENSG00000102313	ITIH6	ITIH5L|UNQ6369|dJ14O9.1	inter-alpha-trypsin inhibitor heavy chain family member 6	protein-coding
221873	chr8	128423701	128423900	+	0	NA	intron (NR_121672, intron 3 of 7)	intron (NR_121672, intron 3 of 7)	140879	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
148000	chr20	63030721	63031180	+	0	NA	intron (NR_033370, intron 1 of 4)	AluSp|SINE|Alu	6078	NR_028295	100144596		NM_022099		LINC00029	C20orf51|NCRNA00029	long intergenic non-protein coding RNA 29	ncRNA
7851	chr1	36366121	36366800	+	0	NA	intron (NM_001282547, intron 1 of 10)	intron (NM_001282547, intron 1 of 10)	19464	NM_032017	83931		NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding
187615	chr5	142971221	142971930	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-102665	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
79349	chr16	593651	594230	+	0	NA	intron (NM_001172664, intron 2 of 6)	intron (NM_001172664, intron 2 of 6)	3863	NM_001172665	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
124994	chr2	9463251	9463960	+	0	NA	intron (NM_016207, intron 15 of 17)	intron (NM_016207, intron 15 of 17)	-10946	NM_001320859	285148		NM_001039613	ENSG00000134330	IAH1	-	isoamyl acetate hydrolyzing esterase 1 (putative)	protein-coding
158001	chr22	49869121	49869380	+	0	NA	intron (NM_014838, intron 1 of 1)	L1MC4a|LINE|L1	15406	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
102461	chr17	75712151	75712650	+	0	NA	Intergenic	L1MB2|LINE|L1	-9059	NM_001005731	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
23275	chr1	227947871	227949300	+	0	NA	promoter-TSS (NM_003395)	promoter-TSS (NM_003395)	-653	NM_003395	7483		NM_003395	ENSG00000143816	WNT9A	WNT14	Wnt family member 9A	protein-coding
128462	chr2	55677301	55677500	+	0	NA	intron (NM_033109, intron 8 of 27)	AluSz6|SINE|Alu	16444	NM_033109	87178		NM_033109	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|SCA25|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
194040	chr6	31844121	31844380	+	0	NA	Intergenic	AluJb|SINE|Alu	7174	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
187488	chr5	142187001	142187200	+	0	NA	Intergenic	Intergenic	78321	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
182300	chr5	58454621	58455630	+	0	NA	intron (NM_001252226, intron 13 of 14)	MER5A|DNA|hAT-Charlie	4961	NM_006622	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
144610	chr20	35828601	35829000	+	0	NA	intron (NM_016436, intron 2 of 17)	intron (NM_016436, intron 2 of 17)	56785	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
158334	chr22	50446751	50447500	+	0	NA	3' UTR (NM_001365819, exon 40 of 40)	3' UTR (NM_001365819, exon 40 of 40)	27910	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
18772	chr1	167510351	167511250	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	7729	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
103158	chr17	77423801	77424000	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	18823	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
148281	chr20	63700021	63700280	+	0	NA	non-coding (NR_051957, exon 8 of 8)	non-coding (NR_051957, exon 8 of 8)	3498	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
199259	chr6	111851671	111851900	+	0	NA	intron (NM_002037, intron 1 of 13)	MER102b|DNA|hAT-Charlie	21286	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
66839	chr14	64910851	64911600	+	0	NA	Intergenic	AluJr|SINE|Alu	-3136	NM_001202559	100529261		NM_001202558	ENSG00000125954	CHURC1-FNTB	FNTB|FTase-beta	CHURC1-FNTB readthrough	protein-coding
47249	chr12	1145751	1145850	+	0	NA	intron (NM_178039, intron 7 of 17)	L1PB1|LINE|L1	118052	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
111290	chr19	3572051	3573400	+	0	NA	promoter-TSS (NM_006339)	promoter-TSS (NM_006339)	-219	NM_006339	10362		NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
119566	chr19	40640701	40640900	+	0	NA	Intergenic	Intergenic	39431	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
151210	chr21	45154621	45155330	+	0	NA	intron (NM_001346687, intron 1 of 11)	intron (NM_001346687, intron 1 of 11)	2445	NM_001346687	104		NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|NEDHYMS|RED1	adenosine deaminase RNA specific B1	protein-coding
224144	chr9	4792151	4794080	+	0	NA	exon (NM_005772, exon 1 of 9)	exon (NM_005772, exon 1 of 9)	171	NM_005772	10171		NM_005772	ENSG00000120158	RCL1	RNAC|RPCL1	RNA terminal phosphate cyclase like 1	protein-coding
3170	chr1	13019951	13020050	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	36575	NM_001300891	101929983		NM_001300891	ENSG00000274764	PRAMEF27	-	PRAME family member 27	protein-coding
101414	chr17	67390251	67391330	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	13509	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
193508	chr6	30577621	30578080	+	0	NA	exon (NM_001025091, exon 3 of 25).2	exon (NM_001025091, exon 3 of 25).2	6408	NM_001025091	23		NM_001090	ENSG00000204574	ABCF1	ABC27|ABC50	ATP binding cassette subfamily F member 1	protein-coding
238413	chrX	150577771	150578330	+	0	NA	intron (NM_001376908, intron 1 of 14)	MLT1E1A|LTR|ERVL-MaLR	9429	NM_000252	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
235955	chrX	53419551	53420250	+	0	NA	intron (NM_006306, intron 1 of 24)	AluSx3|SINE|Alu	2754	NM_006306	8243		NM_006306	ENSG00000072501	SMC1A	CDLS2|DEE85|DXS423E|EIEE85|SB1.8|SMC1|SMC1L1|SMC1alpha|SMCB	structural maintenance of chromosomes 1A	protein-coding
63693	chr14	21093651	21094700	+	0	NA	intron (NM_001102454, intron 1 of 4)	intron (NM_001102454, intron 1 of 4)	4480	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
183028	chr5	73201801	73202250	+	0	NA	promoter-TSS (NR_134291)	promoter-TSS (NR_134291)	-64	NR_134291	340090		NR_134291	ENSG00000287090	LOC340090	-	uncharacterized LOC340090	ncRNA
83033	chr16	22310421	22311030	+	0	NA	intron (NM_018119, intron 6 of 20).2	AluJb|SINE|Alu	13316	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
141211	chr2	239378151	239378450	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	22720	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
10604	chr1	67535401	67535650	+	0	NA	Intergenic	Intergenic	-105123	NM_001018069	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
206315	chr7	30279071	30279550	+	0	NA	intron (NR_136267, intron 1 of 3)	intron (NR_136267, intron 1 of 3)	-5287	NM_147128	223082		NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
133840	chr2	128195651	128195750	+	0	NA	TTS (NR_027671)	TTS (NR_027671)	104500	NR_027671	56886		NM_020120	ENSG00000136731	UGGT1	HUGT1|UGCGL1|UGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding
231483	chr9	131371351	131371650	+	0	NA	Intergenic	AluJb|SINE|Alu	-2151	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
189718	chr5	176532151	176532530	+	0	NA	intron (NM_014901, intron 2 of 10)	intron (NM_014901, intron 2 of 10)	5062	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
227456	chr9	90857221	90857480	+	0	NA	intron (NM_001135052, intron 3 of 12)	intron (NM_001135052, intron 3 of 12)	29930	NM_001174167	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
86744	chr16	67644251	67646100	+	0	NA	promoter-TSS (NM_001013838)	promoter-TSS (NM_001013838)	31	NM_001013838	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
219189	chr8	66591901	66592100	+	0	NA	intron (NM_001144755, intron 8 of 14)	AluJb|SINE|Alu	21218	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
108484	chr18	70773551	70773650	+	0	NA	Intergenic	Intergenic	-122646	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
158280	chr22	50347071	50348000	+	0	NA	intron (NM_001351641, intron 1 of 23)	intron (NM_001351641, intron 1 of 23)	4208	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
133375	chr2	118016821	118017300	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-2990	NM_019044	54520		NM_019044	ENSG00000125633	CCDC93	-	coiled-coil domain containing 93	protein-coding
128575	chr2	60904551	60904850	+	0	NA	intron (NM_001291746, intron 4 of 9)	AluJb|SINE|Alu	23126	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
235605	chrX	47650151	47651500	+	0	NA	promoter-TSS (NM_001114123)	promoter-TSS (NM_001114123)	-221	NM_005229	2002		NM_005229	ENSG00000126767	ELK1	-	ETS transcription factor ELK1	protein-coding
12919	chr1	110640151	110640650	+	0	NA	Intergenic	L2b|LINE|L2	-8960	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
81711	chr16	11251751	11252900	+	0	NA	Intergenic	Intergenic	3857	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
70238	chr14	101120651	101121150	+	0	NA	promoter-TSS (NR_146490)	promoter-TSS (NR_146490)	44	NR_146490	101929422		NR_146490	ENSG00000259004	LINC02285	-	long intergenic non-protein coding RNA 2285	ncRNA
85719	chr16	56631901	56633630	+	0	NA	intron (NM_176870, intron 1 of 2)	intron (NM_176870, intron 1 of 2)	106	NM_176870	4499		NM_176870	ENSG00000205364	MT1M	MT-1M|MT-IM|MT1|MT1K	metallothionein 1M	protein-coding
59507	chr13	26941571	26941930	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-180964	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
209603	chr7	77567121	77567380	+	0	NA	intron (NM_001131008, intron 1 of 17)	intron (NM_001131008, intron 1 of 17)	29207	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
67678	chr14	73137751	73138080	+	0	NA	intron (NM_007318, intron 1 of 11)	AluSz|SINE|Alu	1408	NM_007318	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
131395	chr2	96264551	96265300	+	0	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	1072	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
180806	chr5	32314521	32314780	+	0	NA	Intergenic	L2c|LINE|L2	-1711	NM_001040446	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
95390	chr17	35900171	35901580	+	0	NA	Intergenic	Intergenic	10148	NR_126038	100533789		NR_126038		LRRC37A8P	-	leucine rich repeat containing 37 member A8, pseudogene	pseudo
150787	chr21	43863971	43865400	+	0	NA	promoter-TSS (NM_001369881)	promoter-TSS (NM_001369881)	-538	NM_020132	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
181139	chr5	38349621	38349880	+	0	NA	intron (NM_001205301, intron 3 of 22)	intron (NM_001205301, intron 3 of 22)	53721	NR_102749	100506475		NR_102749	ENSG00000248572	EGFLAM-AS2	-	EGFLAM antisense RNA 2	ncRNA
97045	chr17	42324901	42325500	+	0	NA	intron (NM_001384984, intron 14 of 22)	intron (NM_001384984, intron 14 of 22)	37144	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
9195	chr1	45611221	45612730	+	0	NA	intron (NM_001195193, intron 4 of 12)	AluY|SINE|Alu	12079	NM_001190182	149483		NM_152500	ENSG00000159588	CCDC17	-	coiled-coil domain containing 17	protein-coding
96102	chr17	39625771	39625930	+	0	NA	Intergenic	Intergenic	-1102	NM_032192	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
7381	chr1	32886121	32887200	+	0	NA	intron (NM_002143, intron 1 of 3)	CpG	169	NM_002143	3208		NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
7466	chr1	33097621	33098080	+	0	NA	intron (NR_146649, intron 8 of 10)	intron (NR_146649, intron 8 of 10)	15672	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
15625	chr1	150627801	150628200	+	0	NA	intron (NM_207042, intron 1 of 4)	intron (NM_207042, intron 1 of 4)	1133	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
234796	chrX	24016351	24016800	+	0	NA	intron (NM_030624, intron 2 of 3)	AluSz6|SINE|Alu	10611	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
54995	chr12	96354001	96355430	+	0	NA	intron (NM_002595, intron 1 of 16)	AluJr|SINE|Alu	45724	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
113270	chr19	8519101	8519380	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5073	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
236494	chrX	71714221	71714880	+	0	NA	intron (NM_001145140, intron 5 of 5)	intron (NM_001145140, intron 5 of 5)	1808	NR_165034	100132994		NM_001145139	ENSG00000215113	CXorf49B	CXorf49	chromosome X open reading frame 49B	protein-coding
70989	chr14	104715371	104715530	+	0	NA	intron (NM_022489, intron 22 of 22)	intron (NM_022489, intron 22 of 22)	-8779	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
209953	chr7	92644501	92644700	+	0	NA	intron (NM_001145306, intron 5 of 7)	intron (NM_001145306, intron 5 of 7)	-54210	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
95365	chr17	35868401	35869200	+	0	NA	promoter-TSS (NM_001321395).2	promoter-TSS (NM_001321395).2	91	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
218738	chr8	58803401	58803800	+	0	NA	Intergenic	AluJb|SINE|Alu	-143747	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
137403	chr2	196249751	196250350	+	0	NA	intron (NM_001348768, intron 19 of 28)	intron (NM_001348768, intron 19 of 28)	-9974	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
49063	chr12	14409321	14409580	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	24169	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
54960	chr12	96255951	96256450	+	0	NA	intron (NM_001303511, intron 1 of 2)	intron (NM_001303511, intron 1 of 2)	702	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
65047	chr14	39228701	39229780	+	0	NA	Intergenic	Intergenic	-4675	NM_001329214	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
75243	chr15	64893101	64894400	+	0	NA	Intergenic	Intergenic	-18152	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
107590	chr18	48867051	48867350	+	0	NA	Intergenic	Intergenic	75607	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
142786	chr20	13229701	13229900	+	0	NA	intron (NM_080826, intron 1 of 5)	intron (NM_080826, intron 1 of 5)	8526	NM_080826	140862		NM_080826	ENSG00000101230	ISM1	C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1	isthmin 1	protein-coding
217091	chr8	24293901	24294100	+	0	NA	promoter-TSS (NM_021777)	promoter-TSS (NM_021777)	-40	NR_130709	10863		NM_014265	ENSG00000042980	ADAM28	ADAM 28|MDC-L|MDCL|eMDC II|eMDCII	ADAM metallopeptidase domain 28	protein-coding
116333	chr19	17843151	17843450	+	0	NA	intron (NM_000215, intron 4 of 23)	intron (NM_000215, intron 4 of 23)	4682	NM_000215	3718		NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
72360	chr15	31348341	31348800	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	21735	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
163842	chr3	52479271	52479430	+	0	NA	intron (NM_001276294, intron 11 of 13)	intron (NM_001276294, intron 11 of 13)	-15988	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
843	chr1	1598771	1598930	+	0	NA	promoter-TSS (NR_147951)	promoter-TSS (NR_147951)	-583	NR_147951	105378586		NR_147951		LOC105378586	-	uncharacterized LOC105378586	ncRNA
126053	chr2	25567471	25567780	+	0	NA	intron (NM_001320937, intron 8 of 8)	intron (NM_001320937, intron 8 of 8)	82597	NM_001256308	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
18434	chr1	161472121	161472950	+	0	NA	Intergenic	CpG	-32922	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
194454	chr6	33175101	33175300	+	0	NA	intron (NM_080680, intron 30 of 65).6	MIR|SINE|MIR	17267	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
173419	chr4	8192601	8193130	+	0	NA	Intergenic	Intergenic	-6425	NR_134639	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
35560	chr11	1659451	1659830	+	0	NA	Intergenic	Intergenic	-5957	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
209704	chr7	84194701	84195300	+	0	NA	promoter-TSS (NM_006080)	promoter-TSS (NM_006080)	-211	NM_006080	10371		NM_006080	ENSG00000075213	SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	semaphorin 3A	protein-coding
105369	chr17	82667201	82667600	+	0	NA	TTS (NR_039751)	TTS (NR_039751)	907	NR_039751	100616196		NR_039751	ENSG00000266107	MIR4525	-	microRNA 4525	ncRNA
235367	chrX	44892951	44893050	+	0	NA	intron (NM_001291416, intron 2 of 28)	AluSx|SINE|Alu	19812	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
176477	chr4	89528421	89528880	+	0	NA	Intergenic	Intergenic	-220850	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
94173	chr17	28425971	28426350	+	0	NA	Intergenic	Intergenic	-19948	NM_080669	113235		NM_080669	ENSG00000076351	SLC46A1	G21|HCP1|HsPCFT|PCFT|hPCFT	solute carrier family 46 member 1	protein-coding
26106	chr10	13341971	13342500	+	0	NA	intron (NR_164738, intron 2 of 9)	AluYc|SINE|Alu	6058	NM_001375769	22929		NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
50095	chr12	44845971	44846280	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	29536	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
19200	chr1	172403271	172403630	+	0	NA	intron (NM_001350206, intron 20 of 20)	intron (NM_001350206, intron 20 of 20)	-17235	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
196756	chr6	45432921	45433480	+	0	NA	intron (NM_001278478, intron 2 of 5)	intron (NM_001278478, intron 2 of 5)	10925	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
18252	chr1	161059921	161060750	+	0	NA	intron (NM_001025598, intron 1 of 11)	AluSq|SINE|Alu	9556	NM_181720	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
79147	chr16	263521	263780	+	0	NA	intron (NM_001284497, intron 9 of 12)	intron (NM_001284497, intron 9 of 12)	12294	NM_183337	8786		NM_003834	ENSG00000076344	RGS11	RS11	regulator of G protein signaling 11	protein-coding
22068	chr1	211333871	211334450	+	0	NA	intron (NM_001319207, intron 1 of 10)	MER68|LTR|ERVL	7327	NM_001033910	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
223893	chr9	293001	293200	+	0	NA	intron (NM_203447, intron 4 of 47)	intron (NM_203447, intron 4 of 47)	20052	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
72395	chr15	31385521	31386330	+	0	NA	intron (NM_001302461, intron 1 of 1).3	Tigger1|DNA|TcMar-Tigger	59090	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
110699	chr19	2293001	2293550	+	0	NA	intron (NM_001101391, intron 1 of 1)	AluY|SINE|Alu	-11100	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
150619	chr21	43379051	43379150	+	0	NA	Intergenic	Intergenic	-16751	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
74089	chr15	52780151	52780850	+	0	NA	intron (NM_004498, intron 1 of 1)	intron (NM_004498, intron 1 of 1)	384	NR_073510	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
35595	chr11	1751501	1751700	+	0	NA	Intergenic	Intergenic	-1005	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
197146	chr6	59536971	59537300	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1575689	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
23755	chr1	232735121	232735580	+	0	NA	intron (NR_110683, intron 2 of 3)	MamRTE1|LINE|RTE-BovB	7365	NR_110683	101927683		NR_110683	ENSG00000236497	LINC01744	-	long intergenic non-protein coding RNA 1744	ncRNA
14787	chr1	146086771	146086930	+	0	NA	intron (NM_001302371, intron 64 of 89)	intron (NM_001302371, intron 64 of 89)	34254	NR_125967	101928979		NR_125967		LINC01719	-	long intergenic non-protein coding RNA 1719	ncRNA
80420	chr16	2626671	2627450	+	0	NA	intron (NR_015441, intron 3 of 3)	L1MB8|LINE|L1	-11922	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
50060	chr12	44725671	44725830	+	0	NA	intron (NM_001145108, intron 9 of 19)	L1PA14|LINE|L1	149911	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
67367	chr14	69728821	69729130	+	0	NA	Intergenic	AluSq2|SINE|Alu	-38167	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
147978	chr20	62989271	62989900	+	0	NA	Intergenic	MER41B|LTR|ERV1	17379	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
104465	chr17	81115051	81115680	+	0	NA	intron (NR_169574, intron 15 of 15)	intron (NR_169574, intron 15 of 15)	10008	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
99782	chr17	51151721	51152180	+	0	NA	Intergenic	AluSg|SINE|Alu	-1609	NM_001018136	654364		NM_001018136	ENSG00000011052	NME1-NME2	NM23-LV|NMELV	NME1-NME2 readthrough	protein-coding
105063	chr17	82086101	82086500	+	0	NA	exon (NM_004104, exon 22 of 43)	exon (NM_004104, exon 22 of 43)	3840	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
152488	chr22	20885301	20885850	+	0	NA	intron (NM_004782, intron 4 of 4)	intron (NM_004782, intron 4 of 4)	26568	NM_004782	9342		NM_004782	ENSG00000099940	SNAP29	CEDNIK|SNAP-29	synaptosome associated protein 29	protein-coding
32144	chr10	101289371	101290000	+	0	NA	Intergenic	Intergenic	-26135	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
15272	chr1	149695851	149695950	+	0	NA	Intergenic	Intergenic	-5204	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
157300	chr22	44453951	44454250	+	0	NA	Intergenic	Intergenic	10773	NR_109966	101927526		NR_109966	ENSG00000232655	LINC01656	-	long intergenic non-protein coding RNA 1656	ncRNA
126359	chr2	27434801	27435000	+	0	NA	intron (NM_001321361, intron 6 of 18)	intron (NM_001321361, intron 6 of 18)	6269	NM_001321362	29959		NM_013392	ENSG00000115216	NRBP1	BCON3|MADM|MUDPNP|NRBP	nuclear receptor binding protein 1	protein-coding
116039	chr19	17201351	17201650	+	0	NA	intron (NM_004145, intron 26 of 39)	intron (NM_004145, intron 26 of 39)	-13857	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
76517	chr15	75025101	75025500	+	0	NA	intron (NR_125369, intron 1 of 4)	intron (NR_125369, intron 1 of 4)	1710	NM_001301103	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
93448	chr17	18678121	18678400	+	0	NA	intron (NM_001368134, intron 3 of 3)	intron (NM_001368134, intron 3 of 3)	4054	NM_001368135	2310		NM_001368134	ENSG00000240445	FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B	protein-coding
46816	chr11	130429251	130429350	+	0	NA	promoter-TSS (NM_007037)	promoter-TSS (NM_007037)	-691	NM_007037	11095		NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif 8	protein-coding
69352	chr14	93977801	93979000	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-1830	NM_001202429	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
8076	chr1	39007301	39007500	+	0	NA	Intergenic	MIRb|SINE|MIR	16124	NM_024595	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
120121	chr19	42192001	42192650	+	0	NA	Intergenic	L2c|LINE|L2	25352	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
151804	chr22	18205401	18205880	+	0	NA	intron (NR_136570, intron 1 of 11)	HSATI|Satellite|Satellite	269	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
30758	chr10	84267451	84267850	+	0	NA	Intergenic	Intergenic	-12330	NR_038220	170425		NR_038220	ENSG00000229404	LINC00858	CRCAL-2|LNMAT2	long intergenic non-protein coding RNA 858	ncRNA
68300	chr14	77220521	77220860	+	0	NA	intron (NM_020431, intron 5 of 23)	intron (NM_020431, intron 5 of 23)	38892	NM_020431	57156		NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|SPG87|hsCSC1	transmembrane protein 63C	protein-coding
225917	chr9	40265001	40265200	+	0	NA	Intergenic	Intergenic	-58471	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
109352	chr19	619701	619900	+	0	NA	intron (NM_005035, intron 12 of 20)	CpG-12898	13737	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
31056	chr10	88984501	88984700	+	0	NA	intron (NM_001320855, intron 1 of 8)	intron (NM_001320855, intron 1 of 8)	-6198	NR_028035	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
89735	chr16	89431401	89433030	+	0	NA	intron (NR_110932, intron 1 of 2)	intron (NR_110932, intron 1 of 2)	1297	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
152615	chr22	21420251	21421250	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	3379	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
147034	chr20	53611651	53611950	+	0	NA	intron (NR_134576, intron 1 of 2)	intron (NR_134576, intron 1 of 2)	3446	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
112695	chr19	7066951	7067530	+	0	NA	Intergenic	LTR13|LTR|ERVK	-2463	NM_001044387	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
82952	chr16	21882071	21882530	+	0	NA	Intergenic	Intergenic	-15565	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
147301	chr20	57668001	57668400	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	22486	NM_001255976	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
172993	chr4	4252451	4253350	+	0	NA	Intergenic	L1M5|LINE|L1	-4658	NM_032927	85013		NM_032927	ENSG00000132406	TMEM128	-	transmembrane protein 128	protein-coding
238295	chrX	149488151	149488250	+	0	NA	intron (NM_006123, intron 7 of 7)	intron (NM_006123, intron 7 of 7)	17106	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
167623	chr3	129584871	129585230	+	0	NA	intron (NM_015103, intron 5 of 35)	L2a|LINE|L2	21626	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
102338	chr17	75456221	75457350	+	0	NA	intron (NM_014738, intron 1 of 31)	intron (NM_014738, intron 1 of 31)	150	NM_001351202	9772		NM_014738	ENSG00000177728	TMEM94	IDDCDF|KIAA0195	transmembrane protein 94	protein-coding
216932	chr8	22750921	22751200	+	0	NA	intron (NM_001363233, intron 4 of 6)	intron (NM_001363233, intron 4 of 6)	-57580	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
49609	chr12	27703621	27704100	+	0	NA	Intergenic	Intergenic	-6913	NM_001190864	60488		NM_021821	ENSG00000061794	MRPS35	HDCMD11P|MDS023|MRP-S28|MRPS28|mS35	mitochondrial ribosomal protein S35	protein-coding
29786	chr10	72278151	72278550	+	0	NA	Intergenic	Intergenic	4426	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
99991	chr17	57735801	57736000	+	0	NA	Intergenic	MER117|DNA|hAT-Charlie	9399	NM_001282544	101927581		NM_001282544	ENSG00000166329	CCDC182	-	coiled-coil domain containing 182	protein-coding
17011	chr1	156018451	156019080	+	0	NA	intron (NM_003145, intron 2 of 5)	AluSz|SINE|Alu	2186	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
234768	chrX	23786071	23787000	+	0	NA	TTS (NR_027783)	TTS (NR_027783)	3377	NM_002970	6303		NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
104572	chr17	81367271	81367600	+	0	NA	Intergenic	Intergenic	17690	NR_164138	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
140352	chr2	232669171	232669330	+	0	NA	intron (NM_001308395, intron 3 of 4)	intron (NM_001308395, intron 3 of 4)	-28081	NM_001103148	26058		NM_015575	ENSG00000204120	GIGYF2	GYF2|PARK11|PERQ2|PERQ3|TNRC15	GRB10 interacting GYF protein 2	protein-coding
167724	chr3	131021371	131021880	+	0	NA	intron (NM_001288950, intron 3 of 6)	L1ME3A|LINE|L1	5200	NM_014065	28990		NM_014065	ENSG00000034533	ASTE1	HT001	asteroid homolog 1	protein-coding
222627	chr8	141089351	141090050	+	0	NA	Intergenic	Intergenic	-38889	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
41522	chr11	66266721	66268000	+	0	NA	3' UTR (NM_001134776, exon 16 of 16)	3' UTR (NM_001134776, exon 16 of 16)	-1279	NM_030981	81876		NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
55304	chr12	103575301	103575600	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-11823	NM_017564	55576		NM_017564	ENSG00000136011	STAB2	FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1	stabilin 2	protein-coding
113543	chr19	10194121	10196250	+	0	NA	promoter-TSS (NM_001379)	promoter-TSS (NM_001379)	-232	NM_001130823	1786		NM_001379	ENSG00000130816	DNMT1	ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI	DNA methyltransferase 1	protein-coding
92487	chr17	8867401	8868000	+	0	NA	promoter-TSS (NM_001290211)	promoter-TSS (NM_001290211)	-23	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
192226	chr6	18266021	18266530	+	0	NA	Intergenic	MER52A|LTR|ERV1	-1745	NM_001134709	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
180587	chr5	14946871	14947230	+	0	NA	Intergenic	Intergenic	-75272	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
42126	chr11	67626321	67626850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	3352	NM_181843	254552		NM_181843	ENSG00000167799	NUDT8	-	nudix hydrolase 8	protein-coding
155925	chr22	39618571	39618730	+	0	NA	intron (NM_001003406, intron 3 of 35)	intron (NM_001003406, intron 3 of 35)	47897	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
18321	chr1	161179701	161179900	+	0	NA	Intergenic	MER31B|LTR|ERV1	-1832	NM_001199873	8703		NM_003779	ENSG00000158850	B4GALT3	beta4Gal-T3	beta-1,4-galactosyltransferase 3	protein-coding
7759	chr1	36174701	36174900	+	0	NA	intron (NM_001286365, intron 5 of 15)	intron (NM_001286365, intron 5 of 15)	18640	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
208689	chr7	73236951	73237250	+	0	NA	Intergenic	Intergenic	16461	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
146187	chr20	48759801	48761000	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	67599	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138687	chr2	213078751	213079050	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	71537	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
103934	chr17	79834901	79835900	+	0	NA	intron (NM_003655, intron 4 of 4)	intron (NM_003655, intron 4 of 4)	4040	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
160914	chr3	36319751	36319850	+	0	NA	Intergenic	Intergenic	-60687	NM_001292049	6769		NM_003149	ENSG00000144681	STAC	STAC1	SH3 and cysteine rich domain	protein-coding
117113	chr19	19204551	19204650	+	0	NA	Intergenic	AluSg|SINE|Alu	-1186	NM_001300945	126382		NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
157193	chr22	43109051	43109430	+	0	NA	Intergenic	Intergenic	-1510	NM_001197	638		NM_001197	ENSG00000100290	BIK	BIP1|BP4|NBK	BCL2 interacting killer	protein-coding
140368	chr2	232853071	232853430	+	0	NA	intron (NM_001103146, intron 28 of 28)	intron (NM_001103146, intron 28 of 28)	-15764	NM_001346122	389084		NM_206895	ENSG00000182600	SNORC	ASCL830|C2orf82|UNQ830	secondary ossification center associated regulator of chondrocyte maturation	protein-coding
212287	chr7	123750451	123751180	+	0	NA	Intergenic	L1MA5A|LINE|L1	-1812	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
93579	chr17	19110001	19111500	+	0	NA	Intergenic	L1ME3A|LINE|L1	1886	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
42568	chr11	71930151	71930250	+	0	NA	intron (NM_001300926, intron 1 of 6)	intron (NM_001300926, intron 1 of 6)	1154	NM_018320	55298		NM_018320	ENSG00000137522	RNF121	-	ring finger protein 121	protein-coding
83740	chr16	28621551	28622180	+	0	NA	intron (NM_177536, intron 1 of 5)	LTR72|LTR|ERV1	1721	NM_177536	6817		NM_001055	ENSG00000196502	SULT1A1	HAST1/HAST2|P-PST|P-PST 1|PST|ST1A1|ST1A3|STP|STP1|TSPST1|ts-PST	sulfotransferase family 1A member 1	protein-coding
9010	chr1	44723321	44724130	+	0	NA	intron (NM_001145636, intron 6 of 11)	intron (NM_001145636, intron 6 of 11)	-1824	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
210006	chr7	93117301	93118330	+	0	NA	intron (NM_017654, intron 1 of 2)	intron (NM_017654, intron 1 of 2)	164	NM_017654	54809		NM_017654	ENSG00000205413	SAMD9	C7orf5|DRIF1|M7MLS2|MIRAGE|NFTC|OEF1|OEF2	sterile alpha motif domain containing 9	protein-coding
192157	chr6	17580171	17581250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-19592	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
122250	chr19	49024351	49024650	+	0	NA	promoter-TSS (NM_000737)	promoter-TSS (NM_000737)	-125	NM_000737	1082		NM_000737	ENSG00000104827	CGB3	CGB|CGB5|CGB7|CGB8|LHB|hCGB	chorionic gonadotropin subunit beta 3	protein-coding
201619	chr6	149393301	149393900	+	0	NA	intron (NM_001369506, intron 4 of 7)	intron (NM_001369506, intron 4 of 7)	-6662	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
234752	chrX	23662051	23662900	+	0	NA	Intergenic	L1MB4|LINE|L1	-5018	NM_006406	10549		NM_006406	ENSG00000123131	PRDX4	AOE37-2|AOE372|HEL-S-97n|PRX-4	peroxiredoxin 4	protein-coding
131617	chr2	96940571	96941330	+	0	NA	intron (NM_001122646, intron 8 of 16)	intron (NM_001122646, intron 8 of 16)	21844	NR_110209	101927053		NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
208560	chr7	72635351	72635550	+	0	NA	intron (NM_001145440, intron 11 of 13)	MER20|DNA|hAT-Charlie	-62453	NR_039793	100616310		NR_039793	ENSG00000266525	MIR4650-1	-	microRNA 4650-1	ncRNA
118061	chr19	34288601	34288800	+	0	NA	intron (NM_014686, intron 1 of 13)	intron (NM_014686, intron 1 of 13)	34146	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
42739	chr11	72702251	72702700	+	0	NA	intron (NR_161388, intron 12 of 29)	intron (NR_161388, intron 12 of 29)	2001	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
163800	chr3	52405151	52405830	+	0	NA	intron (NM_004656, intron 10 of 16)	(A)n|Simple_repeat|Simple_repeat	4518	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
230164	chr9	127770321	127772930	+	0	NA	promoter-TSS (NM_005489)	promoter-TSS (NM_005489)	-256	NM_001252334	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
214583	chr7	150630351	150630780	+	0	NA	intron (NM_024711, intron 1 of 2)	intron (NM_024711, intron 1 of 2)	1820	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
233232	chr9	137247571	137248000	+	0	NA	promoter-TSS (NM_001001710)	promoter-TSS (NM_001001710)	-34	NM_001001710	401565		NM_001001710	ENSG00000188163	CIMIP2A	FAM166A|HSD46	ciliary microtubule inner protein 2A	protein-coding
98661	chr17	47834921	47835380	+	0	NA	intron (NM_033413, intron 3 of 7)	intron (NM_033413, intron 3 of 7)	3480	NM_033413	90506		NM_033413	ENSG00000141294	LRRC46	-	leucine rich repeat containing 46	protein-coding
82605	chr16	18900471	18901150	+	0	NA	intron (NM_015092, intron 1 of 62)	Chap1_Mam|DNA|hAT-Charlie	25598	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
17508	chr1	156743971	156744580	+	0	NA	exon (NM_004494, exon 4 of 6)	exon (NM_004494, exon 4 of 6)	-3187	NM_145729	79590		NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24|uL24m	mitochondrial ribosomal protein L24	protein-coding
29563	chr10	71569971	71570500	+	0	NA	intron (NM_001171931, intron 7 of 24)	intron (NM_001171931, intron 7 of 24)	-58315	NR_120672	102723377		NR_120672	ENSG00000223817	CDH23-AS1	C10orf106|NCRNA00223|bA327E2.3	CDH23 antisense RNA 1	ncRNA
232509	chr9	136283421	136284130	+	0	NA	intron (NM_001291516, intron 9 of 9)	intron (NM_001291516, intron 9 of 9)	20319	NM_001378188	399693		NM_001291516	ENSG00000260220	CCDC187	-	coiled-coil domain containing 187	protein-coding
102507	chr17	75774301	75775600	+	0	NA	Intergenic	Intergenic	4829	NM_005324	3021		NM_005324	ENSG00000132475	H3-3B	BRYLIB2|H3-3A|H3.3B|H3F3B	H3.3 histone B	protein-coding
145335	chr20	41125101	41125500	+	0	NA	TTS (NM_003286)	TTS (NM_003286)	-12243	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
109368	chr19	638351	638450	+	0	NA	Intergenic	Intergenic	-1479	NM_020637	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
131789	chr2	98503321	98503580	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	57440	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
201787	chr6	149977151	149977850	+	0	NA	Intergenic	Intergenic	13557	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
159506	chr3	14400001	14400200	+	0	NA	Intergenic	AluSp|SINE|Alu	-2476	NM_001134367	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
196792	chr6	45709901	45710100	+	0	NA	Intergenic	Intergenic	227597	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
81633	chr16	10880701	10881300	+	0	NA	intron (NM_001379334, intron 1 of 19)	AluSz6|SINE|Alu	2033	NM_001379334	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
187891	chr5	148824871	148825030	+	0	NA	Intergenic	Intergenic	-1661	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
198966	chr6	110884471	110884830	+	0	NA	intron (NM_001287216, intron 1 of 4)	AluJr|SINE|Alu	9866	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
197059	chr6	53634451	53634950	+	0	NA	Intergenic	AluSq2|SINE|Alu	6320	NR_125841	101927171		NR_125841	ENSG00000235899	LINC01564	RAMS11|TCONS_00011314|XLOC_005327	long intergenic non-protein coding RNA 1564	ncRNA
104203	chr17	80475271	80475730	+	0	NA	intron (NM_002522, intron 2 of 4)	intron (NM_002522, intron 2 of 4)	1107	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
61093	chr13	48414051	48414430	+	0	NA	intron (NM_001377316, intron 4 of 4)	AluSx|SINE|Alu	-1127	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
71297	chr14	105299271	105299430	+	0	NA	intron (NM_001242787, intron 1 of 17)	AluJo|SINE|Alu	-1424	NM_001243127	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
138719	chr2	213144601	213145000	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	5637	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
208717	chr7	73311521	73311880	+	0	NA	TTS (NM_178125)	TTS (NM_178125)	-2833	NM_001168348	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
112084	chr19	5340701	5341600	+	0	NA	promoter-TSS (NM_130855)	promoter-TSS (NM_130855)	-338	NM_130854	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
154895	chr22	37160921	37161780	+	0	NA	intron (NM_001346222, intron 1 of 9)	MLT1N2|LTR|ERVL-MaLR	-11434	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
114815	chr19	13808821	13809380	+	0	NA	exon (NM_001367834, exon 5 of 14)	exon (NM_001367834, exon 5 of 14)	13657	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
3192	chr1	13732001	13732400	+	0	NA	intron (NM_001135610, intron 3 of 7)	intron (NM_001135610, intron 3 of 7)	-17215	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
46794	chr11	130146271	130146430	+	0	NA	Intergenic	Intergenic	-13432	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
21022	chr1	202957721	202959350	+	0	NA	promoter-TSS (NM_001290557)	promoter-TSS (NM_001290557)	37	NM_001290629	51094		NM_015999	ENSG00000159346	ADIPOR1	ACDCR1|CGI-45|CGI45|PAQR1|TESBP1A	adiponectin receptor 1	protein-coding
230505	chr9	128258251	128258550	+	0	NA	intron (NM_001366246, intron 21 of 25)	intron (NM_001366246, intron 21 of 25)	-13370	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
10777	chr1	77347751	77347850	+	0	NA	intron (NM_174858, intron 6 of 13)	intron (NM_174858, intron 6 of 13)	64713	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
152397	chr22	20547421	20548450	+	0	NA	intron (NM_001003891, intron 2 of 17)	AluJb|SINE|Alu	39888	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
112317	chr19	5896151	5896730	+	0	NA	intron (NM_175614, intron 3 of 3)	intron (NM_175614, intron 3 of 3)	7350	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
121532	chr19	47233771	47234130	+	0	NA	Intergenic	AluJo|SINE|Alu	-1283	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
193831	chr6	31493551	31494300	+	0	NA	promoter-TSS (NM_001289160).8	promoter-TSS (NM_001289160).8	869	NR_149132	102725068		NR_149132	ENSG00000286940	MICB-DT	TCONS_00012692	MICB divergent transcript	ncRNA
235486	chrX	46836471	46837770	+	0	NA	promoter-TSS (NM_006915)	promoter-TSS (NM_006915)	77	NM_006915	6102		NM_006915	ENSG00000102218	RP2	DELXp11.3|NM23-H10|NME10|TBCCD2|XRP2	RP2 activator of ARL3 GTPase	protein-coding
144439	chr20	35488151	35488530	+	0	NA	intron (NM_007186, intron 20 of 34)	intron (NM_007186, intron 20 of 34)	28357	NM_001318219	11190		NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1|CRDHL2	centrosomal protein 250	protein-coding
70079	chr14	100158171	100158330	+	0	NA	intron (NM_206918, intron 1 of 2)	AluJo|SINE|Alu	1395	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
80506	chr16	2742451	2742950	+	0	NA	intron (NR_027274, intron 2 of 5)	intron (NR_027274, intron 2 of 5)	2097	NR_027274	100128788		NR_027274	ENSG00000205913	SRRM2-AS1	-	SRRM2 antisense RNA 1	ncRNA
193516	chr6	30583751	30584250	+	0	NA	promoter-TSS (NR_030615).2	promoter-TSS (NR_030615).2	-332	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
109396	chr19	668971	669880	+	0	NA	Intergenic	MER11A|LTR|ERVK	-6211	NM_001366018	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
117736	chr19	29609851	29611130	+	0	NA	exon (NM_006627, exon 3 of 7)	exon (NM_006627, exon 3 of 7)	4207	NR_027368	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
28338	chr10	46600651	46600750	+	0	NA	Intergenic	L1ME2|LINE|L1	-2555	NR_155740	101927699		NR_155739		SYT15-AS1	-	SYT15 antisense RNA 1	ncRNA
52379	chr12	55714871	55715030	+	0	NA	Intergenic	AluSg|SINE|Alu	-1084	NM_001487	2647		NM_001487	ENSG00000135441	BLOC1S1	BLOS1|BORCS1|GCN5L1|MICoA|RT14	biogenesis of lysosomal organelles complex 1 subunit 1	protein-coding
90183	chr17	364871	365030	+	0	NA	Intergenic	L2|LINE|L2	-12108	NM_001190411	9501		NM_006987	ENSG00000181031	RPH3AL	NOC2	rabphilin 3A like (without C2 domains)	protein-coding
19889	chr1	183651771	183652600	+	0	NA	intron (NM_203454, intron 1 of 1)	intron (NM_203454, intron 1 of 1)	1131	NM_203454	403314		NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4	protein-coding
87299	chr16	70113621	70114950	+	0	NA	promoter-TSS (NM_017990)	promoter-TSS (NM_017990)	-47	NM_017990	55066		NM_017990	ENSG00000090857	PDPR	PDP3	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding
198998	chr6	110944601	110945080	+	0	NA	Intergenic	Intergenic	-13866	NM_138408	112495		NM_138408	ENSG00000155115	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC subunit 6	protein-coding
86762	chr16	67662471	67662800	+	0	NA	TTS (NR_138150)	TTS (NR_138150)	1675	NM_001037281	50855		NM_016948	ENSG00000102981	PARD6A	PAR-6A|PAR6|PAR6C|PAR6alpha|TAX40|TIP-40	par-6 family cell polarity regulator alpha	protein-coding
159887	chr3	16887951	16888250	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	3145	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
38463	chr11	45661801	45662200	+	0	NA	intron (NM_003654, intron 1 of 3)	intron (NM_003654, intron 1 of 3)	3622	NM_003654	8534		NM_003654	ENSG00000175264	CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate sulfotransferase 1	protein-coding
102886	chr17	76522101	76522300	+	0	NA	Intergenic	FRAM|SINE|Alu	-5386	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
197353	chr6	73453201	73453850	+	0	NA	Intergenic	Intergenic	-1228	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
189706	chr5	176520001	176520500	+	0	NA	Intergenic	Intergenic	17152	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
227985	chr9	95435371	95435730	+	0	NA	Intergenic	Intergenic	-28059	NR_038982	100507346		NR_038982		LOC100507346	-	uncharacterized LOC100507346	ncRNA
78030	chr15	90000351	90000800	+	0	NA	promoter-TSS (NM_198526)	promoter-TSS (NM_198526)	-749	NM_198526	374655		NM_198526	ENSG00000140548	ZNF710	-	zinc finger protein 710	protein-coding
126720	chr2	30181071	30182280	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5759	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
129523	chr2	69689271	69689830	+	0	NA	intron (NM_001320698, intron 2 of 14)	L1MC5|LINE|L1	45742	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
58268	chr12	128825501	128825700	+	0	NA	Intergenic	AluJb|SINE|Alu	-1642	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
59134	chr13	21427371	21427930	+	0	NA	intron (NM_153251, intron 1 of 11)	AluSz|SINE|Alu	31653	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
5304	chr1	25216121	25216380	+	0	NA	Intergenic	Intergenic	16252	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
134031	chr2	131089921	131090480	+	0	NA	intron (NM_001321743, intron 2 of 8)	AluYc|SINE|Alu	2962	NM_001321747	130074		NM_001009993	ENSG00000152102	FAM168B	MANI	family with sequence similarity 168 member B	protein-coding
91026	chr17	2813971	2815830	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	18462	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
90728	chr17	1999451	2000050	+	0	NA	intron (NM_178568, intron 1 of 1)	intron (NM_178568, intron 1 of 1)	-17966	NR_135642	105371485		NR_135642	ENSG00000228133	LOC105371485	-	uncharacterized LOC105371485	ncRNA
74979	chr15	63888801	63889000	+	0	NA	Intergenic	MIR|SINE|MIR	-17881	NR_029944	494334		NR_029944	ENSG00000199156	MIR422A	MIRN422A	microRNA 422a	ncRNA
34106	chr10	125995871	125996230	+	0	NA	intron (NM_145235, intron 4 of 10)	intron (NM_145235, intron 4 of 10)	-22777	NR_102707	101410540		NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
236018	chrX	54999721	55000600	+	0	NA	promoter-TSS (NM_001271748)	promoter-TSS (NM_001271748)	-203	NM_001271748	27301		NM_014481	ENSG00000169188	APEX2	APE2|APEXL2|XTH2|ZGRF2	apurinic/apyrimidinic endodeoxyribonuclease 2	protein-coding
134304	chr2	135977051	135977150	+	0	NA	intron (NM_001293312, intron 2 of 14)	intron (NM_001293312, intron 2 of 14)	-8076	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
75946	chr15	70300121	70301230	+	0	NA	Intergenic	Intergenic	-202758	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
203910	chr7	1503721	1504830	+	0	NA	intron (NM_001080453, intron 1 of 47)	CpG-25350	114	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
175245	chr4	59079071	59079430	+	0	NA	Intergenic	L1HS|LINE|L1	65677	NR_133942	105377247		NR_133941	ENSG00000251266	LINC02429	-	long intergenic non-protein coding RNA 2429	ncRNA
137265	chr2	193895271	193895500	+	0	NA	Intergenic	Intergenic	-448884	NR_110222	101927406		NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
136970	chr2	190418801	190419000	+	0	NA	intron (NM_017694, intron 2 of 7)	intron (NM_017694, intron 2 of 7)	10042	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
140396	chr2	233079171	233079870	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	19178	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
103078	chr17	77320471	77320630	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	1035	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
81354	chr16	4804071	4805400	+	0	NA	non-coding (NR_136699, exon 15 of 16)	non-coding (NR_136699, exon 15 of 16)	-1785	NR_046480	79641		NM_024589	ENSG00000067836	ROGDI	KTZS|RAV2|ROGD1	rogdi atypical leucine zipper	protein-coding
200804	chr6	137901371	137901900	+	0	NA	Intergenic	L2a|LINE|L2	-33402	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
157342	chr22	44669801	44670830	+	0	NA	intron (NM_001017529, intron 1 of 7)	intron (NM_001017529, intron 1 of 7)	1768	NM_001017528	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
69221	chr14	92729851	92730150	+	0	NA	intron (NM_001008530, intron 3 of 14)	intron (NM_001008530, intron 3 of 14)	18627	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
225876	chr9	39288121	39288450	+	0	NA	promoter-TSS (NM_033655)	promoter-TSS (NM_033655)	-118	NM_033655	79937		NM_024879	ENSG00000106714	CNTNAP3	CASPR3|CNTNAP3A	contactin associated protein family member 3	protein-coding
161859	chr3	45841251	45842650	+	0	NA	intron (NM_001276378, intron 3 of 11)	CpG	169	NR_075080	54585		NM_020347	ENSG00000163818	LZTFL1	BBS17	leucine zipper transcription factor like 1	protein-coding
237631	chrX	124033651	124034250	+	0	NA	intron (NM_001042751, intron 5 of 33)	MLT1A0|LTR|ERVL-MaLR	72244	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
149234	chr21	25570651	25571130	+	0	NA	intron (NR_001458, intron 2 of 2)	intron (NR_001458, intron 2 of 2)	-3090	NR_030784	406947		NR_030784	ENSG00000283904	MIR155	MIRN155|miRNA155|mir-155	microRNA 155	ncRNA
50550	chr12	48000821	48001130	+	0	NA	intron (NM_001844, intron 1 of 53)	intron (NM_001844, intron 1 of 53)	3501	NM_001844	1280		NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
117360	chr19	19552671	19553380	+	0	NA	Intergenic	Intergenic	14760	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
100380	chr17	60137001	60137200	+	0	NA	Intergenic	Intergenic	-12873	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
154722	chr22	36451071	36452900	+	0	NA	Intergenic	Intergenic	29655	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
148924	chr21	9246301	9246800	+	0	NA	Intergenic	Intergenic	-116789	NR_038329	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
45637	chr11	118956321	118957180	+	0	NA	intron (NM_006760, intron 1 of 4)	intron (NM_006760, intron 1 of 4)	452	NM_006760	7379		NM_006760	ENSG00000110375	UPK2	UP2|UPII	uroplakin 2	protein-coding
33656	chr10	119737401	119738030	+	0	NA	intron (NM_001243195, intron 1 of 4)	intron (NM_001243195, intron 1 of 4)	11665	NM_014937	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
155519	chr22	38690521	38691530	+	0	NA	intron (NM_014876, intron 2 of 4)	AluSz|SINE|Alu	9068	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
115599	chr19	16035401	16035600	+	0	NA	non-coding (NR_024335, exon 3 of 5)	non-coding (NR_024335, exon 3 of 5)	1380	NR_110321	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
22558	chr1	222615751	222616230	+	0	NA	Intergenic	L1ME1|LINE|L1	-2107	NM_198551	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
186209	chr5	134368601	134369300	+	0	NA	intron (NM_001300853, intron 1 of 12)	AluJb|SINE|Alu	-1779	NM_001113575	51265		NM_016508	ENSG00000006837	CDKL3	NKIAMRE	cyclin dependent kinase like 3	protein-coding
123184	chr19	52397621	52398430	+	0	NA	promoter-TSS (NR_125345)	promoter-TSS (NR_125345)	176	NM_032423	84436		NM_032423	ENSG00000167555	ZNF528	-	zinc finger protein 528	protein-coding
125824	chr2	24349121	24349780	+	0	NA	intron (NM_147152, intron 1 of 29)	Charlie4z|DNA|hAT-Charlie	11086	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
182193	chr5	56818951	56819880	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	3866	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
130039	chr2	74419101	74419330	+	0	NA	intron (NM_001316764, intron 1 of 2)	intron (NM_001316764, intron 1 of 2)	-1498	NM_001145054	388963		NM_001145054	ENSG00000284308	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
200037	chr6	129708751	129708850	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	1377	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
196825	chr6	46376601	46376950	+	0	NA	intron (NM_001251974, intron 2 of 4)	intron (NM_001251974, intron 2 of 4)	-50883	NM_005822	10231		NM_005822	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
61323	chr13	50427301	50428300	+	0	NA	intron (NR_109974, intron 3 of 6)	AluY|SINE|Alu	99649	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
111864	chr19	4637401	4637750	+	0	NA	Intergenic	MIRc|SINE|MIR	-1941	NM_152362	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
101098	chr17	64973301	64973500	+	0	NA	non-coding (NR_026903, exon 2 of 5)	non-coding (NR_026903, exon 2 of 5)	2185	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
35050	chr11	593001	593200	+	0	NA	intron (NM_001286582, intron 6 of 17)	intron (NM_001286582, intron 6 of 17)	16630	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
171751	chr3	198104921	198105700	+	0	NA	Intergenic	CpG	-24639	NR_003291	348840		NM_182631	ENSG00000291192	ANKRD18DP	-	ankyrin repeat domain 18D, pseudogene	pseudo
220748	chr8	102272471	102272700	+	0	NA	exon (NM_015902, exon 48 of 59)	exon (NM_015902, exon 48 of 59)	33134	NR_125415	101927221		NR_125415		UBR5-DT	UBR5-AS1	UBR5 divergent transcript	ncRNA
126173	chr2	26469101	26469380	+	0	NA	intron (NM_194248, intron 32 of 46)	intron (NM_194248, intron 32 of 46)	8884	NM_004802	9381		NM_004802	ENSG00000115155	OTOF	AUNB1|DFNB6|DFNB9|FER1L2|NSRD9	otoferlin	protein-coding
53192	chr12	62158801	62159200	+	0	NA	intron (NM_178539, intron 1 of 4)	intron (NM_178539, intron 1 of 4)	33839	NM_178539	338811		NM_178539	ENSG00000198673	TAFA2	FAM19A2|TAFA-2	TAFA chemokine like family member 2	protein-coding
109431	chr19	709601	709830	+	0	NA	intron (NM_002579, intron 1 of 8)	CpG	780	NM_002579	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
234880	chrX	30577121	30577890	+	0	NA	intron (NM_025159, intron 1 of 2)	intron (NM_025159, intron 1 of 2)	261	NM_025159	80231		NM_025159	ENSG00000120280	TASL	CXorf21	TLR adaptor interacting with endolysosomal SLC15A4	protein-coding
61475	chr13	52405621	52406480	+	0	NA	5' UTR (NM_199263, exon 1 of 4)	5' UTR (NM_199263, exon 1 of 4)	122	NM_199263	55901		NM_018676	ENSG00000136114	THSD1	ANIB12|LMPHM13|TMTSP|UNQ3010	thrombospondin type 1 domain containing 1	protein-coding
150430	chr21	42416401	42416730	+	0	NA	exon (NM_018961, exon 6 of 15)	exon (NM_018961, exon 6 of 15)	12663	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
149380	chr21	31012471	31013250	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	25616	NM_001099219	728299		NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
112536	chr19	6524371	6524530	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-6576	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
100234	chr17	59334051	59334550	+	0	NA	intron (NM_001005404, intron 1 of 4)	intron (NM_001005404, intron 1 of 4)	2645	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
103162	chr17	77426101	77427150	+	0	NA	intron (NM_001293696, intron 1 of 9)	L2a|LINE|L2	21548	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
180818	chr5	32439321	32439800	+	0	NA	intron (NR_144318, intron 2 of 18)	intron (NR_144318, intron 2 of 18)	5180	NM_016107	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
49553	chr12	26830451	26830830	+	0	NA	intron (NM_002223, intron 1 of 56)	intron (NM_002223, intron 1 of 56)	2554	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
18091	chr1	160687071	160687380	+	0	NA	intron (NM_001256030, intron 1 of 2)	MER11C|LTR|ERVK	24597	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
52177	chr12	54302851	54303150	+	0	NA	Intergenic	L2c|LINE|L2	-1963	NM_001261461	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
152891	chr22	22717751	22717930	+	0	NA	Intergenic	Intergenic	71528	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
112811	chr19	7504521	7504980	+	0	NA	intron (NM_198534, intron 4 of 8)	intron (NM_198534, intron 4 of 8)	7202	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
224470	chr9	15606701	15607050	+	0	NA	intron (NM_173550, intron 6 of 25)	intron (NM_173550, intron 6 of 25)	42897	NM_001355547	203238		NM_173550	ENSG00000164989	CCDC171	C9orf93|bA536D16.1|bA778P13.1	coiled-coil domain containing 171	protein-coding
91158	chr17	3770051	3770820	+	0	NA	intron (NM_002208, intron 2 of 30)	intron (NM_002208, intron 2 of 30)	30753	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
10257	chr1	64268821	64269430	+	0	NA	Intergenic	AluSx3|SINE|Alu	65502	NM_001366235	148581		NM_152489	ENSG00000177414	UBE2U	-	ubiquitin conjugating enzyme E2 U	protein-coding
128458	chr2	55620251	55620950	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	-2978	NM_001282850	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
163214	chr3	50245821	50247650	+	0	NA	promoter-TSS (NM_001166425)	promoter-TSS (NM_001166425)	-175	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
193337	chr6	30205371	30205930	+	0	NA	intron (NM_003449, intron 1 of 9).3	AluJb|SINE|Alu	7756	NM_003449	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
121655	chr19	47489071	47489430	+	0	NA	intron (NR_038456, intron 10 of 11)	intron (NR_038456, intron 10 of 11)	4968	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
59515	chr13	27129901	27130230	+	0	NA	intron (NR_046547, intron 1 of 2)	L1M4|LINE|L1	4532	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
166972	chr3	125585471	125585980	+	0	NA	intron (NM_022776, intron 1 of 12)	intron (NM_022776, intron 1 of 12)	9772	NM_022776	114885		NM_022776	ENSG00000144909	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein like 11	protein-coding
256	chr1	917921	918380	+	0	NA	non-coding (NR_026874, exon 3 of 4)	non-coding (NR_026874, exon 3 of 4)	1542	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
142890	chr20	17956701	17956900	+	0	NA	intron (NM_014426, intron 2 of 12)	intron (NM_014426, intron 2 of 12)	6146	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
5440	chr1	25572521	25573450	+	0	NA	Intergenic	MIRb|SINE|MIR	29379	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
14545	chr1	144877671	144878230	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	159779	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
230932	chr9	129401351	129402050	+	0	NA	Intergenic	(CCCT)n|Simple_repeat|Simple_repeat	64777	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
91851	chr17	7217301	7218580	+	0	NA	promoter-TSS (NM_001128827)	promoter-TSS (NM_001128827)	-313	NM_001321075	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
95859	chr17	38842001	38842930	+	0	NA	Intergenic	Intergenic	-1027	NM_001080465	388381		NM_001080465	ENSG00000275489	SPMAP1	C17orf98	sperm microtubule associated protein 1	protein-coding
121905	chr19	48396901	48397430	+	0	NA	intron (NM_000836, intron 2 of 13)	intron (NM_000836, intron 2 of 13)	3497	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
62716	chr13	104810271	104810430	+	0	NA	Intergenic	L2a|LINE|L2	-655517	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
173630	chr4	13477001	13477200	+	0	NA	intron (NM_001017979, intron 2 of 6)	intron (NM_001017979, intron 2 of 6)	7240	NM_001017979	9364		NM_004249	ENSG00000157869	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
73911	chr15	50764401	50766300	+	0	NA	intron (NM_032802, intron 1 of 14)	CpG	356	NM_032802	84888		NM_032802	ENSG00000138600	SPPL2A	IMD86|IMP3|PSL2	signal peptide peptidase like 2A	protein-coding
159381	chr3	13391321	13391830	+	0	NA	intron (NM_024923, intron 3 of 39)	MIRb|SINE|MIR	28747	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
140431	chr2	233120501	233120700	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	60258	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
34288	chr10	131927151	131927650	+	0	NA	intron (NM_001291310, intron 3 of 9)	intron (NM_001291310, intron 3 of 9)	26392	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
185687	chr5	131796301	131797700	+	0	NA	promoter-TSS (NM_001346114)	promoter-TSS (NM_001346114)	17	NM_001008738	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
91396	chr17	4595021	4595730	+	0	NA	intron (NM_001375361, intron 4 of 6)	intron (NM_001375361, intron 4 of 6)	10846	NM_001375361	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
225849	chr9	38075911	38076050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-6753	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
171939	chr4	882201	882400	+	0	NA	intron (NM_001318134, intron 11 of 24)	intron (NM_001318134, intron 11 of 24)	50016	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
40884	chr11	65120001	65120650	+	0	NA	TTS (NM_001997)	TTS (NM_001997)	1809	NM_001997	2197		NM_001997	ENSG00000149806	FAU	FAU1|Fub1|Fubi|MNSFbeta|RPS30|S30|asr1|eS30	FAU ubiquitin like and ribosomal protein S30 fusion	protein-coding
179344	chr4	183095051	183095350	+	0	NA	Intergenic	Intergenic	3999	NR_024008	152641		NM_153008	ENSG00000251359	WWC2-AS2	C4orf38	WWC2 antisense RNA 2	ncRNA
98879	chr17	48550571	48550930	+	0	NA	exon (NM_001384747, exon 3 of 3)	exon (NM_001384747, exon 3 of 3)	-5719	NM_002145	3212		NM_002145	ENSG00000173917	HOXB2	HOX2|HOX2H|Hox-2.8|K8	homeobox B2	protein-coding
168778	chr3	151327501	151327900	+	0	NA	3' UTR (NM_176894, exon 2 of 2)	3' UTR (NM_176894, exon 2 of 2)	1849	NM_176894	53829		NM_023914	ENSG00000181631	P2RY13	FKSG77|GPCR1|GPR86|GPR94|P2Y13|SP174	purinergic receptor P2Y13	protein-coding
133802	chr2	127805751	127806080	+	0	NA	intron (NM_001006623, intron 1 of 7)	intron (NM_001006623, intron 1 of 7)	5256	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
200210	chr6	131244901	131245500	+	0	NA	intron (NR_164834, intron 9 of 9)	intron (NR_164834, intron 9 of 9)	-5204	NM_004842	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
56145	chr12	111323921	111324630	+	0	NA	intron (NM_015267, intron 18 of 21)	AluSx3|SINE|Alu	20133	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
237709	chrX	124406701	124406900	+	0	NA	intron (NM_001163279, intron 25 of 31)	intron (NM_001163279, intron 25 of 31)	60237	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
57002	chr12	120575771	120576330	+	0	NA	intron (NM_001330474, intron 16 of 16)	MER117|DNA|hAT-Charlie	5348	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
210494	chr7	100170301	100170500	+	0	NA	exon (NM_152742, exon 10 of 10)	exon (NM_152742, exon 10 of 10)	-1783	NM_024637	79690		NM_024637	ENSG00000197093	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
107707	chr18	49656271	49656430	+	0	NA	Intergenic	Intergenic	94293	NM_006033	9388		NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding
222447	chr8	136530501	136530830	+	0	NA	promoter-TSS (NR_147196)	promoter-TSS (NR_147196)	-133	NR_147196	107986980		NR_147196	ENSG00000254101	LINC02055	-	long intergenic non-protein coding RNA 2055	ncRNA
9989	chr1	55070751	55071050	+	0	NA	intron (NM_015306, intron 67 of 67)	intron (NM_015306, intron 67 of 67)	30678	NR_110451	255738		NM_174936	ENSG00000169174	PCSK9	FH3|FHCL3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding
39685	chr11	61720401	61720800	+	0	NA	intron (NM_006133, intron 2 of 19)	intron (NM_006133, intron 2 of 19)	-32036	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
34939	chr11	443571	443730	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-1639	NM_001012302	338440		NM_001012302	ENSG00000185101	ANO9	PIG5|TMEM16J|TP53I5	anoctamin 9	protein-coding
207135	chr7	42939871	42940230	+	0	NA	Intergenic	Intergenic	7674	NM_031903	64983		NM_031903	ENSG00000106591	MRPL32	HSPC283|L32mt|MRP-L32|bL32m|bMRP-59b	mitochondrial ribosomal protein L32	protein-coding
94511	chr17	29394201	29394500	+	0	NA	intron (NM_025142, intron 1 of 17)	AluYm1|SINE|Alu	3425	NM_025142	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
187397	chr5	141887901	141888450	+	0	NA	Intergenic	AluY|SINE|Alu	8520	NR_033244	729080		NR_033244		LOC729080	-	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo
60574	chr13	41679421	41679880	+	0	NA	intron (NM_015058, intron 35 of 44)	intron (NM_015058, intron 35 of 44)	-111255	NR_049803	100847026		NR_049803	ENSG00000284584	MIR5006	-	microRNA 5006	ncRNA
90830	chr17	2301721	2301980	+	0	NA	intron (NM_017575, intron 1 of 18)	intron (NM_017575, intron 1 of 18)	1935	NM_017575	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
27439	chr10	31765601	31766000	+	0	NA	Intergenic	Intergenic	143126	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
38070	chr11	35188821	35189180	+	0	NA	intron (NM_001202557, intron 4 of 8)	intron (NM_001202557, intron 4 of 8)	26050	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
51531	chr12	52304751	52305580	+	0	NA	intron (NM_001320198, intron 6 of 10)	intron (NM_001320198, intron 6 of 10)	-13631	NM_002281	3887		NM_002281	ENSG00000205426	KRT81	HB1|Hb-1|K81|KRTHB1|MLN137|ghHkb1|hHAKB2-1	keratin 81	protein-coding
55539	chr12	105337571	105337730	+	0	NA	intron (NM_001145199, intron 1 of 5)	LTR8B|LTR|ERV1	6959	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
204833	chr7	5706251	5706750	+	0	NA	intron (NM_207111, intron 13 of 16)	L1MB1|LINE|L1	5410	NR_106934	102466203		NR_106934	ENSG00000283419	MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
195258	chr6	36427071	36427230	+	0	NA	intron (NM_152990, intron 2 of 4)	AluSx4|SINE|Alu	-15617	NM_001286580	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
227492	chr9	91191071	91191330	+	0	NA	Intergenic	Intergenic	72138	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
213828	chr7	141585951	141586350	+	0	NA	intron (NM_018238, intron 2 of 15)	intron (NM_018238, intron 2 of 15)	34740	NM_001364948	55750		NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
21392	chr1	205263001	205263200	+	0	NA	intron (NM_001331034, intron 1 of 3)	intron (NM_001331034, intron 1 of 3)	5903	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
32162	chr10	101453721	101454330	+	0	NA	intron (NM_001256856, intron 2 of 13)	intron (NM_001256856, intron 2 of 13)	99860	NM_003939	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
194002	chr6	31781621	31782200	+	0	NA	exon (NM_006295, exon 19 of 30).4	exon (NM_006295, exon 19 of 30).4	-4582	NM_025258	80737		NM_025258	ENSG00000204396	VWA7	C6orf27|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding
77154	chr15	79965901	79966550	+	0	NA	intron (NM_004049, intron 1 of 1)	intron (NM_004049, intron 1 of 1)	4971	NM_001114735	597		NM_004049	ENSG00000140379	BCL2A1	ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1	BCL2 related protein A1	protein-coding
148199	chr20	63559001	63560400	+	0	NA	intron (NM_033405, intron 13 of 13)	intron (NM_033405, intron 13 of 13)	5541	NM_001319152	79025		NM_024059	ENSG00000125531	FNDC11	C20orf195	fibronectin type III domain containing 11	protein-coding
206697	chr7	36508771	36509230	+	0	NA	Intergenic	AluJo|SINE|Alu	91120	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
136699	chr2	181136901	181137300	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	13263	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
31566	chr10	97320001	97321500	+	0	NA	3' UTR (NM_005479, exon 1 of 1)	3' UTR (NM_005479, exon 1 of 1)	1479	NM_005479	10023		NM_005479	ENSG00000165879	FRAT1	-	FRAT regulator of WNT signaling pathway 1	protein-coding
182342	chr5	59152751	59153050	+	0	NA	intron (NM_001364603, intron 5 of 15)	intron (NM_001364603, intron 5 of 15)	-113424	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
191682	chr6	13486451	13487100	+	0	NA	promoter-TSS (NM_001242628)	promoter-TSS (NM_001242628)	-592	NM_001242628	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
101066	chr17	64838951	64839050	+	0	NA	Intergenic	Intergenic	-1816	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
219291	chr8	69254651	69254750	+	0	NA	Intergenic	L1PA2|LINE|L1	-150510	NR_039986	100505718		NR_039986	ENSG00000253658	LINC01592	-	long intergenic non-protein coding RNA 1592	ncRNA
132035	chr2	100984851	100985190	+	0	NA	intron (NM_002518, intron 16 of 20)	intron (NM_002518, intron 16 of 20)	-7859	NR_110213	101927142		NR_110213		NPAS2-AS1	-	NPAS2 antisense RNA 1	ncRNA
184522	chr5	101678601	101678800	+	0	NA	Intergenic	Intergenic	617584	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
196547	chr6	44064471	44064830	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	10002	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
167443	chr3	129082171	129082530	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	21571	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
30039	chr10	73805171	73806930	+	0	NA	intron (NR_160744, intron 6 of 14)	intron (NR_160744, intron 6 of 14)	-4651	NR_038357	100507331		NR_038357	ENSG00000272589	ZSWIM8-AS1	-	ZSWIM8 antisense RNA 1	ncRNA
198612	chr6	107729271	107729430	+	0	NA	intron (NM_001286408, intron 4 of 6)	MLT1C|LTR|ERVL-MaLR	2800	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
215188	chr7	155738701	155738900	+	0	NA	intron (NM_053043, intron 11 of 17)	intron (NM_053043, intron 11 of 17)	70363	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
55768	chr12	108567351	108567650	+	0	NA	intron (NM_213595, intron 4 of 4)	MIRb|SINE|MIR	4904	NM_213595	23479		NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
76505	chr15	74954571	74954950	+	0	NA	3' UTR (NM_017793, exon 1 of 1)	3' UTR (NM_017793, exon 1 of 1)	2012	NM_017793	54913		NM_017793	ENSG00000178718	RPP25	-	ribonuclease P and MRP subunit p25	protein-coding
54483	chr12	92041801	92042300	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	99663	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
130333	chr2	84990971	84991350	+	0	NA	intron (NM_020122, intron 1 of 6)	L2a|LINE|L2	19999	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
218103	chr8	40432571	40432750	+	0	NA	Intergenic	L1PA2|LINE|L1	-89297	NR_156738	112543493		NR_156738	ENSG00000253802	SIRLNT	lncRNA-PRLB	SIRT1 regulating lncRNA tumor promoter	ncRNA
185719	chr5	132057421	132057900	+	0	NA	Intergenic	L2|LINE|L2	-2995	NM_000588	3562		NM_000588	ENSG00000164399	IL3	IL-3|MCGF|MULTI-CSF	interleukin 3	protein-coding
148042	chr20	63220171	63220530	+	0	NA	Intergenic	Intergenic	-4219	NM_017798	54915		NM_017798	ENSG00000149658	YTHDF1	C20orf21|DF1	YTH N6-methyladenosine RNA binding protein F1	protein-coding
145470	chr20	43745071	43745430	+	0	NA	Intergenic	LTR33|LTR|ERVL	-18248	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
53004	chr12	57516101	57516700	+	0	NA	TTS (NM_001195054)	TTS (NM_001195054)	2859	NR_030346	693201		NR_030346	ENSG00000208028	MIR616	MIRN616|hsa-mir-616	microRNA 616	ncRNA
4546	chr1	22027601	22028000	+	0	NA	intron (NR_109762, intron 2 of 2)	intron (NR_109762, intron 2 of 2)	-1752	NR_110692	101928043		NR_110692	ENSG00000228397	LINC01635	-	long intergenic non-protein coding RNA 1635	ncRNA
36354	chr11	3919171	3919630	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluSq2|SINE|Alu	63338	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
139324	chr2	219549601	219550400	+	0	NA	promoter-TSS (NR_036082)	promoter-TSS (NR_036082)	-853	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
178366	chr4	146340951	146341050	+	0	NA	intron (NM_001317816, intron 4 of 10)	intron (NM_001317816, intron 4 of 10)	-67583	NR_107003	102465837		NR_107003	ENSG00000278438	MIR7849	hsa-mir-7849	microRNA 7849	ncRNA
23259	chr1	227885201	227886080	+	0	NA	Intergenic	Intergenic	56043	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
166294	chr3	112555571	112556500	+	0	NA	intron (NM_022488, intron 2 of 11)	MamSINE1|SINE|tRNA-RTE	-5285	NM_001348906	55032		NM_017945	ENSG00000138459	SLC35A5	-	solute carrier family 35 member A5	protein-coding
190684	chr5	181478051	181478150	+	0	NA	Intergenic	L1MC|LINE|L1	110813	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
187073	chr5	140158321	140158630	+	0	NA	intron (NR_130738, intron 1 of 4)	AluY|SINE|Alu	1156	NR_130738	101929719		NR_130738	ENSG00000254363	LOC101929719	-	uncharacterized LOC101929719	ncRNA
22445	chr1	220786601	220787000	+	0	NA	promoter-TSS (NM_022746)	promoter-TSS (NM_022746)	-113	NM_022746	64757		NM_022746	ENSG00000186205	MTARC1	MARC1|MOSC1	mitochondrial amidoxime reducing component 1	protein-coding
228260	chr9	98020721	98021180	+	0	NA	Intergenic	Intergenic	-35782	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
212051	chr7	114967821	114968080	+	0	NA	intron (NM_199072, intron 3 of 4)	AluJb|SINE|Alu	45796	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
222004	chr8	130017971	130018530	+	0	NA	Intergenic	Intergenic	-1121	NM_001353269	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
102550	chr17	75841251	75841550	+	0	NA	intron (NM_199242, intron 6 of 31)	AluSx1|SINE|Alu	3004	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
213	chr1	820851	821500	+	0	NA	Intergenic	Intergenic	3804	NR_103536	400728		NM_207464	ENSG00000177757	FAM87B	-	family with sequence similarity 87 member B	ncRNA
208332	chr7	66207851	66208350	+	0	NA	intron (NM_003596, intron 1 of 5)	intron (NM_003596, intron 1 of 5)	2766	NM_003596	8460		NM_003596	ENSG00000169902	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
222331	chr8	133524271	133524930	+	0	NA	intron (NM_173344, intron 2 of 9)	MER52A|LTR|ERV1	47287	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
155471	chr22	38489201	38489400	+	0	NA	intron (NM_006386, intron 11 of 12)	intron (NM_006386, intron 11 of 12)	17011	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
96431	chr17	40186201	40187100	+	0	NA	intron (NM_001303534, intron 4 of 14)	AluSc|SINE|Alu	-6947	NR_106927	102465523		NR_106927	ENSG00000274621	MIR6867	hsa-mir-6867	microRNA 6867	ncRNA
138980	chr2	218283871	218284730	+	0	NA	intron (NM_001321433, intron 1 of 12)	MIR3|SINE|MIR	2549	NM_001321427	64114		NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
31762	chr10	97919071	97919230	+	0	NA	intron (NM_001206528, intron 4 of 14)	intron (NM_001206528, intron 4 of 14)	-43253	NR_162124	113839520		NR_162124		MIR3085	-	microRNA 3085	ncRNA
161666	chr3	43338001	43338400	+	0	NA	intron (NM_017719, intron 4 of 6)	L1MEd|LINE|L1	13762	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
73152	chr15	41424601	41425250	+	0	NA	intron (NM_015138, intron 1 of 17)	AluSz6|SINE|Alu	7821	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
14458	chr1	144418371	144419680	+	0	NA	Intergenic	CpG	6449	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
163857	chr3	52488801	52489000	+	0	NA	intron (NM_007184, intron 16 of 20)	intron (NM_007184, intron 16 of 20)	-6438	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
38825	chr11	47305451	47306000	+	0	NA	intron (NR_164842, intron 23 of 33)	L1M2a|LINE|L1	-33615	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
190783	chr6	593171	593930	+	0	NA	intron (NM_018303, intron 10 of 27)	intron (NM_018303, intron 10 of 27)	63414	NM_148959	135458		NM_148959	ENSG00000188996	HUS1B	-	HUS1 checkpoint clamp component B	protein-coding
192100	chr6	16702821	16703280	+	0	NA	intron (NM_000332, intron 3 of 8)	L1PA4|LINE|L1	57134	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
41337	chr11	65921951	65922050	+	0	NA	TTS (NM_006442)	TTS (NM_006442)	2574	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
122207	chr19	48962021	48962880	+	0	NA	TTS (NM_004324)	TTS (NM_004324)	-2859	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
52869	chr12	57174051	57174350	+	0	NA	intron (NM_002332, intron 22 of 88)	MIR|SINE|MIR	-20304	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
97100	chr17	42458321	42459130	+	0	NA	promoter-TSS (NM_001378542)	promoter-TSS (NM_001378542)	-153	NM_001378547	535		NM_005177	ENSG00000033627	ATP6V0A1	ATP6N1|ATP6N1A|DEE104|NEDEBA|Stv1|VPP1|Vph1|a1	ATPase H+ transporting V0 subunit a1	protein-coding
70565	chr14	102591451	102593000	+	0	NA	promoter-TSS (NM_015156)	promoter-TSS (NM_015156)	-424	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
211492	chr7	105209671	105210250	+	0	NA	intron (NM_001350741, intron 2 of 16)	intron (NM_001350741, intron 2 of 16)	59117	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
97468	chr17	43760051	43760800	+	0	NA	Intergenic	Intergenic	-1634	NM_025237	50964		NM_025237	ENSG00000167941	SOST	CDD|DAND6|SOST1|VBCH	sclerostin	protein-coding
186424	chr5	135834571	135834730	+	0	NA	promoter-TSS (NM_001349336)	promoter-TSS (NM_001349336)	-13	NR_146141	153328		NM_145282	ENSG00000145832	SLC25A48	-	solute carrier family 25 member 48	protein-coding
160563	chr3	30688921	30689750	+	0	NA	intron (NM_001024847, intron 7 of 7)	intron (NM_001024847, intron 7 of 7)	82734	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
115577	chr19	15840801	15841000	+	0	NA	Intergenic	MER41B|LTR|ERV1	11953	NR_015379	652995		NR_015379	ENSG00000214049	UCA1	CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36	urothelial cancer associated 1	ncRNA
24711	chr1	247347821	247348280	+	0	NA	intron (NR_168399, intron 1 of 2)	intron (NR_168399, intron 1 of 2)	15996	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
124503	chr19	58582201	58582580	+	0	NA	non-coding (NR_026052, exon 2 of 2)	non-coding (NR_026052, exon 2 of 2)	6991	NR_026052	65996		NM_023939	ENSG00000293115	CENPBD2P	CENPBD1P1	CENPB DNA-binding domains containing 2, pseudogene	pseudo
65623	chr14	52286501	52286700	+	0	NA	Intergenic	PRIMA4_LTR|LTR|ERV1	18902	NM_001281469	5729		NM_000953	ENSG00000168229	PTGDR	AS1|ASRT1|DP|DP1|PTGDR1	prostaglandin D2 receptor	protein-coding
231078	chr9	129712851	129713350	+	0	NA	non-coding (NR_132102, exon 2 of 2)	non-coding (NR_132102, exon 2 of 2)	5606	NR_132102	101929437		NR_132102	ENSG00000236024	PRRX2-AS1	-	PRRX2 antisense RNA 1	ncRNA
85215	chr16	47459471	47459630	+	0	NA	intron (NM_001305002, intron 1 of 17)	intron (NM_001305002, intron 1 of 17)	1513	NM_030790	81533		NM_030790	ENSG00000129636	ITFG1	2310047C21Rik|CDA08|LINKIN|LNKN-1|TIP	integrin alpha FG-GAP repeat containing 1	protein-coding
4412	chr1	21216301	21217350	+	0	NA	TTS (NM_001113349)	TTS (NM_001113349)	-39928	NM_001198802	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
7953	chr1	37594401	37594900	+	0	NA	intron (NM_001323624, intron 1 of 14)	AluSx1|SINE|Alu	1287	NM_013285	29889		NM_013285	ENSG00000134697	GNL2	HUMAUANTIG|NGP1|Ngp-1|Nog2|Nug2	G protein nucleolar 2	protein-coding
184726	chr5	109455771	109456000	+	0	NA	Intergenic	Intergenic	-45911	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
200128	chr6	130221601	130222000	+	0	NA	intron (NM_001258275, intron 3 of 13)	Tigger2a|DNA|TcMar-Tigger	1151	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
68606	chr14	89613021	89613930	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	5690	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
131910	chr2	98822221	98823700	+	0	NA	exon (NM_207362, exon 7 of 10)	exon (NM_207362, exon 7 of 10)	-51062	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
239043	chrY	7232821	7233280	+	0	NA	Intergenic	AluY|SINE|Alu	-40922	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
70590	chr14	102741601	102742000	+	0	NA	Intergenic	AluSg|SINE|Alu	-35649	NM_003300	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
120086	chr19	42121121	42122180	+	0	NA	intron (NM_001247994, intron 4 of 13)	intron (NM_001247994, intron 4 of 13)	10796	NM_002698	5452		NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding
170237	chr3	184195301	184195700	+	0	NA	Intergenic	Intergenic	9425	NM_001351299	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
82573	chr16	18782001	18782200	+	0	NA	3' UTR (NM_001030009, exon 5 of 5)	3' UTR (NM_001030009, exon 5 of 5)	8234	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
72666	chr15	38536101	38536300	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	28614	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
101232	chr17	66188101	66188300	+	0	NA	intron (NM_001353128, intron 1 of 24)	L2c|LINE|L2	3692	NM_001302891	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
154526	chr22	36138951	36139250	+	0	NA	Intergenic	L2|LINE|L2	21655	NM_030644	80833		NM_014349	ENSG00000128284	APOL3	APOLIII|CG121|CG12_1|apoL-III	apolipoprotein L3	protein-coding
44708	chr11	111596351	111596900	+	0	NA	Intergenic	L1MA10|LINE|L1	-5824	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
161698	chr3	43502371	43502530	+	0	NA	intron (NM_001346467, intron 12 of 13)	MSTB1|LTR|ERVL-MaLR	119476	NM_001346467	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
98167	chr17	46062501	46062780	+	0	NA	intron (NM_015443, intron 6 of 14).2	AluSc5|SINE|Alu	63390	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
25692	chr10	8891451	8891950	+	0	NA	Intergenic	Intergenic	-6289	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
168495	chr3	143447801	143448000	+	0	NA	intron (NM_173653, intron 12 of 15)	L2a|LINE|L2	105654	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
8692	chr1	42038451	42038750	+	0	NA	Intergenic	Intergenic	-2666	NR_038261	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
121360	chr19	46841901	46842100	+	0	NA	intron (NM_001301078, intron 2 of 4)	AluJo|SINE|Alu	8314	NM_001301076	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
206679	chr7	36391521	36392080	+	0	NA	intron (NM_018685, intron 1 of 23)	MER105|DNA|hAT-Charlie	-1443	NM_001100425	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
148177	chr20	63540251	63541050	+	0	NA	3' UTR (NM_080823, exon 8 of 8)	3' UTR (NM_080823, exon 8 of 8)	-3274	NM_005975	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
136677	chr2	181091621	181092080	+	0	NA	Intergenic	L1PA7|LINE|L1	-31987	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
115320	chr19	15101421	15101780	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-5801	NM_033025	85360		NM_033025	ENSG00000105137	SYDE1	7h3|SYD1	synapse defective Rho GTPase homolog 1	protein-coding
203617	chr7	950171	950730	+	0	NA	intron (NM_001284308, intron 1 of 10)	AluY|SINE|Alu	4230	NM_006869	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
30487	chr10	79265171	79265400	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-82184	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
40419	chr11	64165701	64166700	+	0	NA	promoter-TSS (NM_014067)	promoter-TSS (NM_014067)	-87	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
133619	chr2	126661521	126662050	+	0	NA	intron (NM_016815, intron 1 of 2)	intron (NM_016815, intron 1 of 2)	5627	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
177704	chr4	121977821	121978280	+	0	NA	Intergenic	L2c|LINE|L2	-25990	NM_001130698	7222		NM_003305	ENSG00000138741	TRPC3	SCA41|TRP3	transient receptor potential cation channel subfamily C member 3	protein-coding
119758	chr19	41287771	41287930	+	0	NA	intron (NM_144732, intron 7 of 14)	AluSx|SINE|Alu	-22322	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
33899	chr10	124507221	124507680	+	0	NA	intron (NM_001167880, intron 5 of 5)	intron (NM_001167880, intron 5 of 5)	45627	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
57194	chr12	121455101	121455500	+	0	NA	intron (NM_001005366, intron 12 of 22)	intron (NM_001005366, intron 12 of 22)	-10948	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
109347	chr19	615551	616450	+	0	NA	exon (NM_001194, exon 8 of 8)	exon (NM_001194, exon 8 of 8)	17537	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
239349	chrY	19478021	19478280	+	0	NA	intron (NR_033732, intron 2 of 10)	intron (NR_033732, intron 2 of 10)	25003	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
152346	chr22	20434021	20434400	+	0	NA	intron (NM_182895, intron 1 of 10)	AluJo|SINE|Alu	3615	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
231934	chr9	133118801	133119200	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	2240	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
36633	chr11	7537171	7537530	+	0	NA	intron (NM_001351855, intron 1 of 24)	intron (NM_001351855, intron 1 of 24)	23351	NM_001351856	8495		NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
63347	chr13	114027901	114028150	+	0	NA	intron (NM_001320822, intron 5 of 23).2	intron (NM_001320822, intron 5 of 23).2	49930	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
109223	chr19	486721	487480	+	0	NA	intron (NM_001385599, intron 2 of 4)	L2a|LINE|L2	4524	NM_001385599	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
127864	chr2	45672771	45672930	+	0	NA	intron (NM_005400, intron 1 of 14)	AluJo|SINE|Alu	21175	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
108933	chr18	79469651	79470150	+	0	NA	3' UTR (NM_001278675, exon 8 of 8)	3' UTR (NM_001278675, exon 8 of 8)	69601	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
229672	chr9	124446871	124447130	+	0	NA	Intergenic	Intergenic	-31558	NM_002799	5695		NM_002799	ENSG00000136930	PSMB7	-	proteasome 20S subunit beta 7	protein-coding
51777	chr12	53335921	53336780	+	0	NA	promoter-TSS (NM_001173467)	promoter-TSS (NM_001173467)	4	NM_001173467	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
95696	chr17	38443601	38444380	+	0	NA	intron (NM_001199417, intron 1 of 23).2	intron (NM_001199417, intron 1 of 23).2	15526	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
112732	chr19	7344601	7346000	+	0	NA	Intergenic	AluSx|SINE|Alu	-3637	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
89239	chr16	88641421	88641730	+	0	NA	Intergenic	L2b|LINE|L2	3003	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
189935	chr5	177392171	177392330	+	0	NA	intron (NM_003052, intron 8 of 12)	AluSx1|SINE|Alu	7816	NM_003052	6569		NM_003052	ENSG00000131183	SLC34A1	FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2	solute carrier family 34 member 1	protein-coding
178398	chr4	147621051	147621150	+	0	NA	intron (NM_018241, intron 1 of 9)	intron (NM_018241, intron 1 of 9)	3703	NM_018241	55751		NM_018241	ENSG00000164168	TMEM184C	SLC51C3|TMEM34	transmembrane protein 184C	protein-coding
92758	chr17	15260651	15261250	+	0	NA	promoter-TSS (NM_153322)	promoter-TSS (NM_153322)	-130	NM_153322	5376		NM_000304	ENSG00000109099	PMP22	CIDP|CMT1A|CMT1E|DSS|GAS-3|GAS3|HMSNIA|HNPP|Sp110	peripheral myelin protein 22	protein-coding
41906	chr11	67275271	67275430	+	0	NA	intron (NM_001619, intron 1 of 20)	intron (NM_001619, intron 1 of 20)	8877	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
170010	chr3	180910901	180911100	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1670	NM_001013439	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
188225	chr5	150778051	150781250	+	0	NA	intron (NM_032947, intron 1 of 1)	L2a|LINE|L2	1704	NM_032947	85027		NM_032947	ENSG00000256235	SMIM3	C5orf62|MST150|NID67	small integral membrane protein 3	protein-coding
193441	chr6	30486021	30486600	+	0	NA	Intergenic	Intergenic	-3199	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
27087	chr10	27291271	27291780	+	0	NA	intron (NR_138082, intron 4 of 4)	MIRb|SINE|MIR	32763	NR_138082	101060171		NR_138082		ODAD2P1	ARMC4P1	outer dynein arm docking complex subunit 2 pseudogene 1	pseudo
117655	chr19	23971771	23971930	+	0	NA	Intergenic	CpG	-13897	NR_149007	100505851		NR_149007	ENSG00000269289	LOC100505851	-	uncharacterized LOC100505851	ncRNA
144849	chr20	36889651	36890230	+	0	NA	TTS (NM_015474)	TTS (NM_015474)	13802	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
71464	chr14	105864701	105865230	+	0	NA	Intergenic	Intergenic	-5412	NR_130466	100616422		NR_130466	ENSG00000264781	MIR4537	-	microRNA 4537	ncRNA
531	chr1	1226821	1227550	+	0	NA	intron (NM_016547, intron 2 of 6)	intron (NM_016547, intron 2 of 6)	4816	NM_016176	51150		NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
44342	chr11	102421251	102421780	+	0	NA	intron (NM_052932, intron 2 of 4)	intron (NM_052932, intron 2 of 4)	31250	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
62388	chr13	99268901	99269100	+	0	NA	intron (NR_026644, intron 4 of 8)	L3|LINE|CR1	-10572	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
177953	chr4	139013371	139013530	+	0	NA	promoter-TSS (NR_133945)	promoter-TSS (NR_133945)	-804	NR_133945	105377448		NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
93065	chr17	17497901	17498100	+	0	NA	Intergenic	Intergenic	-1605	NM_001199989	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
90144	chr17	133101	133300	+	0	NA	Intergenic	Intergenic	-4369	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
133787	chr2	127749671	127750030	+	0	NA	intron (NM_001006623, intron 7 of 7)	AluYc|SINE|Alu	48353	NM_032740	84826		NM_032740	ENSG00000173349	SFT2D3	-	SFT2 domain containing 3	protein-coding
203789	chr7	1244651	1244950	+	0	NA	Intergenic	Intergenic	11928	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
174161	chr4	36267621	36268150	+	0	NA	intron (NR_122080, intron 2 of 2)	intron (NR_122080, intron 2 of 2)	11367	NR_122080	439933		NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA
62512	chr13	99484201	99484750	+	0	NA	Intergenic	MER90|LTR|ERV1	14831	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
45720	chr11	119093901	119094800	+	0	NA	TTS (NM_001024382)	TTS (NM_001024382)	1115	NM_002105	3014		NM_002105	ENSG00000188486	H2AX	H2A.X|H2A/X|H2AFX	H2A.X variant histone	protein-coding
107882	chr18	56645371	56645780	+	0	NA	Intergenic	Intergenic	-5784	NM_015285	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
140347	chr2	232613601	232614200	+	0	NA	intron (NM_001243252, intron 1 of 3)	(CA)n|Simple_repeat|Simple_repeat	7843	NM_001243252	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
26477	chr10	17668821	17669080	+	0	NA	intron (NM_001324287, intron 2 of 11)	L1MC2|LINE|L1	24799	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
162131	chr3	46944921	46945580	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	31251	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
89988	chr16	89859821	89860080	+	0	NA	intron (NM_032451, intron 9 of 14)	intron (NM_032451, intron 9 of 14)	-13642	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
117905	chr19	32793921	32795500	+	0	NA	exon (NM_001366102, exon 14 of 33)	exon (NM_001366102, exon 14 of 33)	74943	NM_001366102	91646		NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
61116	chr13	48492101	48493800	+	0	NA	intron (NR_147985, intron 11 of 11)	L2a|LINE|L2	40130	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
110862	chr19	2615751	2616150	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-14765	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
140223	chr2	231722921	231723550	+	0	NA	Intergenic	AluJo|SINE|Alu	9921	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
198809	chr6	109025401	109025630	+	0	NA	intron (NM_014454, intron 1 of 9)	L1MEd|LINE|L1	-15960	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
93090	chr17	17660271	17660800	+	0	NA	Intergenic	L1MC1|LINE|L1	17153	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
187379	chr5	141870001	141870650	+	0	NA	promoter-TSS (NM_001278613)	promoter-TSS (NM_001278613)	-698	NM_001278613	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
177603	chr4	121009051	121010180	+	0	NA	Intergenic	Intergenic	62920	NM_024574	79625		NM_024574	ENSG00000173376	NDNF	C4orf31|HH25|NORD	neuron derived neurotrophic factor	protein-coding
215453	chr7	157891171	157891530	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	36765	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
32908	chr10	110192621	110192900	+	0	NA	Intergenic	L1MD1|LINE|L1	-14845	NM_130439	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
218915	chr8	60791621	60791880	+	0	NA	intron (NM_017780, intron 3 of 37)	intron (NM_017780, intron 3 of 37)	50491	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
16642	chr1	155131921	155132180	+	0	NA	intron (NM_182685, intron 2 of 3)	L2b|LINE|L2	-3325	NM_001287590	55974		NM_018845	ENSG00000169241	SLC50A1	HsSWEET1|RAG1AP1|SCP|SWEET1|slv	solute carrier family 50 member 1	protein-coding
214055	chr7	143382331	143382880	+	0	NA	promoter-TSS (NR_106952)	promoter-TSS (NR_106952)	-81	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
150840	chr21	44051471	44051830	+	0	NA	intron (NM_003274, intron 3 of 22)	intron (NM_003274, intron 3 of 22)	-22674	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
166788	chr3	122512571	122512950	+	0	NA	intron (NM_002264, intron 1 of 13)	intron (NM_002264, intron 1 of 13)	2179	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
52520	chr12	56082521	56082800	+	0	NA	intron (NM_001005915, intron 1 of 2)	intron (NM_001005915, intron 1 of 2)	2495	NM_001982	2065		NM_001982	ENSG00000065361	ERBB3	ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|VSCN1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3	erb-b2 receptor tyrosine kinase 3	protein-coding
170169	chr3	183634951	183636000	+	0	NA	promoter-TSS (NM_001349413)	promoter-TSS (NM_001349413)	-148	NM_001349420	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
121736	chr19	47729371	47730480	+	0	NA	intron (NM_014601, intron 4 of 5)	(TC)n|Simple_repeat|Simple_repeat	-15621	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
80702	chr16	3064771	3066990	+	0	NA	promoter-TSS (NM_001012636)	promoter-TSS (NM_001012636)	96	NM_001012636	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
199022	chr6	111173471	111173630	+	0	NA	intron (NM_018593, intron 2 of 5)	MER1A|DNA|hAT-Charlie	59716	NR_145796	109623478		NR_145796		SNORD166	-	small nucleolar RNA, C/D box 166	snoRNA
150375	chr21	42235751	42235850	+	0	NA	intron (NM_207628, intron 4 of 16)	MER4B|LTR|ERV1	15902	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
2545	chr1	9729951	9730450	+	0	NA	3' UTR (NM_001009566, exon 19 of 19)	3' UTR (NM_001009566, exon 19 of 19)	38733	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
3957	chr1	18640171	18640730	+	0	NA	intron (NM_001135254, intron 4 of 8)	intron (NM_001135254, intron 4 of 8)	9604	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
152073	chr22	19729101	19729700	+	0	NA	Intergenic	Intergenic	5861	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
196568	chr6	44126701	44128780	+	0	NA	promoter-TSS (NM_032111)	promoter-TSS (NM_032111)	186	NM_018426	55362		NM_018426	ENSG00000137216	TMEM63B	C6orf110	transmembrane protein 63B	protein-coding
117532	chr19	20564901	20566130	+	0	NA	intron (NM_001159293, intron 1 of 3)	intron (NM_001159293, intron 1 of 3)	266	NM_001159293	100129842		NM_001159293	ENSG00000237440	ZNF737	ZNF102	zinc finger protein 737	protein-coding
224335	chr9	6763651	6764030	+	0	NA	intron (NR_148677, intron 1 of 21)	AluSp|SINE|Alu	5867	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
51257	chr12	51046071	51046230	+	0	NA	Intergenic	AluY|SINE|Alu	-2070	NR_147098	25875		NM_015416	ENSG00000050426	LETMD1	1110019O13Rik|HCCR|HCCR-1|HCCR-2|HCCR1|HCCR2|HCRR-2|SLC55A3	LETM1 domain containing 1	protein-coding
193712	chr6	31175771	31176330	+	0	NA	intron (NR_152838, intron 2 of 3).6	intron (NR_152838, intron 2 of 3).6	-5368	NM_002701	5460		NM_002701	ENSG00000204531	POU5F1	OCT3|OCT4|OTF-3|OTF3|OTF4|Oct-3|Oct-4|Oct3/4	POU class 5 homeobox 1	protein-coding
85333	chr16	50150371	50150530	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2461	NM_001040285	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
43269	chr11	75592551	75592900	+	0	NA	intron (NM_033063, intron 3 of 3)	L2b|LINE|L2	9529	NR_145823	105369391		NR_145823	ENSG00000255326	LOC105369391	-	uncharacterized LOC105369391	ncRNA
20528	chr1	198685971	198686530	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	47210	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
92278	chr17	8070971	8071850	+	0	NA	Intergenic	Intergenic	16306	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
38599	chr11	46296771	46297230	+	0	NA	intron (NM_052854, intron 1 of 11)	intron (NM_052854, intron 1 of 11)	19338	NM_052854	90993		NM_052854	ENSG00000157613	CREB3L1	C16DELp11.2|DEL16p11.2|OASIS|OI16	cAMP responsive element binding protein 3 like 1	protein-coding
49082	chr12	14433101	14433500	+	0	NA	intron (NM_001286515, intron 2 of 12)	AluSc|SINE|Alu	48019	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
211985	chr7	113240151	113240300	+	0	NA	Intergenic	(CTCT)n|Simple_repeat|Simple_repeat	-121643	NM_001352687	401397		NM_001352687	ENSG00000214194	SMIM30	LINC00998|MAVI1	small integral membrane protein 30	protein-coding
201802	chr6	150002821	150003080	+	0	NA	intron (NR_024045, intron 1 of 3)	ERV3-16A3_I-int|LTR|ERVL	2194	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
86566	chr16	67204121	67204430	+	0	NA	TTS (NM_024712)	TTS (NM_024712)	-1880	NR_029887	442901		NR_029887	ENSG00000207948	MIR328	MIRN328|hsa-mir-328|mir-328	microRNA 328	ncRNA
173937	chr4	25687751	25688450	+	0	NA	Intergenic	Intergenic	31636	NM_001177999	10568		NM_006424	ENSG00000157765	SLC34A2	NAPI-3B|NAPI-IIb|NPTIIb|NaPi2b|PULAM	solute carrier family 34 member 2	protein-coding
189502	chr5	173238721	173239180	+	0	NA	Intergenic	CpG	-3744	NM_004387	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
140841	chr2	236969951	236970730	+	0	NA	Intergenic	Intergenic	85827	NR_135202	93463		NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA
191033	chr6	3159151	3159550	+	0	NA	Intergenic	AluY|SINE|Alu	-1806	NM_001069	7280		NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
135225	chr2	159275171	159275530	+	0	NA	intron (NM_001330279, intron 3 of 9)	HAL1ME|LINE|L1	11353	NM_001330278	151525		NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
88674	chr16	85680221	85680680	+	0	NA	intron (NM_016095, intron 3 of 4)	intron (NM_016095, intron 3 of 4)	8504	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
11550	chr1	91020371	91020680	+	0	NA	intron (NM_032186, intron 1 of 3)	intron (NM_032186, intron 1 of 3)	983	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
63149	chr13	113592951	113593250	+	0	NA	intron (NR_026580, intron 2 of 10)	intron (NR_026580, intron 2 of 10)	8347	NM_007111	7027		NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
18629	chr1	166479051	166479380	+	0	NA	intron (NR_146890, intron 1 of 2)	intron (NR_146890, intron 1 of 2)	10824	NR_146890	105371590		NR_146890		LINC01675	-	long intergenic non-protein coding RNA 1675	ncRNA
213104	chr7	131190701	131190900	+	0	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	80706	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
223151	chr8	143523621	143523880	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	-17502	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
120534	chr19	44903501	44904380	+	0	NA	TTS (NM_006114)	TTS (NM_006114)	-1856	NM_001302688	348		NM_000041	ENSG00000130203	APOE	AD2|APO-E|ApoE4|LDLCQ5|LPG	apolipoprotein E	protein-coding
12227	chr1	100411921	100412650	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	59779	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
88715	chr16	85935771	85937130	+	0	NA	Intergenic	Intergenic	18103	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
233066	chr9	137080621	137081400	+	0	NA	intron (NM_207309, intron 7 of 8)	intron (NM_207309, intron 7 of 8)	3493	NM_207309	91373		NM_207309	ENSG00000197355	UAP1L1	-	UDP-N-acetylglucosamine pyrophosphorylase 1 like 1	protein-coding
222468	chr8	140048771	140049130	+	0	NA	intron (NR_164662, intron 16 of 22)	L2c|LINE|L2	51585	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
80348	chr16	2499221	2499850	+	0	NA	intron (NM_001199107, intron 5 of 7)	intron (NM_001199107, intron 5 of 7)	-14191	NM_001198569	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
158145	chr22	50183301	50183500	+	0	NA	Intergenic	Intergenic	-2513	NR_135275	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
5755	chr1	26481301	26481500	+	0	NA	Intergenic	AluJb|SINE|Alu	8960	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
172504	chr4	2257721	2258000	+	0	NA	intron (NM_006454, intron 3 of 5)	intron (NM_006454, intron 3 of 5)	4249	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
163678	chr3	52236421	52236980	+	0	NA	intron (NM_007284, intron 1 of 8)	intron (NM_007284, intron 1 of 8)	2458	NM_007284	11344		NM_007284	ENSG00000247596	TWF2	A6RP|A6r|MSTP011|PTK9L	twinfilin actin binding protein 2	protein-coding
109841	chr19	1203251	1204280	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-2013	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
98369	chr17	46374721	46374980	+	0	NA	intron (NR_033799, intron 1 of 6)	MER47A|DNA|TcMar-Tigger	2037	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
204443	chr7	3464821	3465480	+	0	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	163898	NM_152744	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
74602	chr15	60578851	60579450	+	0	NA	intron (NM_134260, intron 1 of 11)	Charlie1a|DNA|hAT-Charlie	13376	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
10531	chr1	66955571	66955730	+	0	NA	intron (NM_001077702, intron 5 of 15)	intron (NM_001077702, intron 5 of 15)	25394	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
9616	chr1	52402401	52402800	+	0	NA	intron (NM_001190819, intron 1 of 16)	intron (NM_001190819, intron 1 of 16)	1823	NM_004153	4998		NM_004153	ENSG00000085840	ORC1	HSORC1|ORC1L|PARC1	origin recognition complex subunit 1	protein-coding
121113	chr19	45971801	45972500	+	0	NA	intron (NM_002516, intron 1 of 3)	intron (NM_002516, intron 1 of 3)	1715	NM_002516	4858		NM_002516	ENSG00000104967	NOVA2	ANOVA|NEDASB|NOVA-2|NOVA3	NOVA alternative splicing regulator 2	protein-coding
205045	chr7	6556401	6557000	+	0	NA	Intergenic	AluSz|SINE|Alu	-5264	NM_001145118	392862		NM_001145118	ENSG00000215045	GRID2IP	DELPHILIN	Grid2 interacting protein	protein-coding
187346	chr5	141680051	141680480	+	0	NA	exon (NM_022481, exon 2 of 33)	exon (NM_022481, exon 2 of 33)	1965	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
14810	chr1	146278871	146279030	+	0	NA	Intergenic	Intergenic	-18823	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
17346	chr1	156487671	156488250	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	2727	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
13660	chr1	116555501	116556000	+	0	NA	intron (NR_026665, intron 1 of 5)	intron (NR_026665, intron 1 of 5)	4361	NR_039621	100616384		NR_039621	ENSG00000264419	MIR548AC	-	microRNA 548ac	ncRNA
222496	chr8	140463071	140463230	+	0	NA	Intergenic	Intergenic	-4571	NM_031466	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
233098	chr9	137114201	137116580	+	0	NA	promoter-TSS (NM_013379)	promoter-TSS (NM_013379)	-657	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
99763	chr17	51046751	51046850	+	0	NA	promoter-TSS (NM_001251971)	promoter-TSS (NM_001251971)	78	NM_001251971	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
220510	chr8	100669621	100670280	+	0	NA	Intergenic	AluSg4|SINE|Alu	-20285	NM_152628	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
45838	chr11	119375701	119376180	+	0	NA	intron (NM_004205, intron 1 of 12)	intron (NM_004205, intron 1 of 12)	5750	NM_004205	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
206990	chr7	38335401	38336080	+	0	NA	Intergenic	Intergenic	-5837	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
163351	chr3	50435001	50435530	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	68369	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
178730	chr4	152937421	152938200	+	0	NA	promoter-TSS (NR_136614)	promoter-TSS (NR_136614)	-973	NR_136614	729870		NR_136614	ENSG00000287642	LOC729870	-	uncharacterized LOC729870	ncRNA
88927	chr16	87827051	87827650	+	0	NA	Intergenic	Intergenic	7310	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
59840	chr13	30459251	30459880	+	0	NA	3' UTR (NM_002128, exon 5 of 5)	3' UTR (NM_002128, exon 5 of 5)	4762	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
125108	chr2	9754001	9755000	+	0	NA	Intergenic	L1ME1|LINE|L1	-88942	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
19414	chr1	174174521	174174980	+	0	NA	intron (NM_001366447, intron 1 of 20)	MLT2B3|LTR|ERVL	15230	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
234556	chrX	19730151	19730450	+	0	NA	intron (NM_001353892, intron 3 of 17)	AluJr|SINE|Alu	-59301	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
13695	chr1	116754171	116754600	+	0	NA	promoter-TSS (NM_001767)	promoter-TSS (NM_001767)	-45	NM_001328609	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
167833	chr3	133804121	133804530	+	0	NA	intron (NM_021203, intron 1 of 7)	MER65A|LTR|ERV1	-1490	NR_163491	58477		NM_021203	ENSG00000144867	SRPRB	APMCF1|SR-beta	SRP receptor subunit beta	protein-coding
85654	chr16	56197971	56198380	+	0	NA	intron (NM_020988, intron 2 of 8)	intron (NM_020988, intron 2 of 8)	-3650	NR_026889	26077		NR_026889	ENSG00000261439	GNAO1-AS1	DKFZP434H168	GNAO1 antisense RNA 1	ncRNA
136858	chr2	186498001	186498200	+	0	NA	intron (NM_018471, intron 2 of 9)	intron (NM_018471, intron 2 of 9)	11840	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
144876	chr20	36916001	36916400	+	0	NA	intron (NM_001363733, intron 9 of 15)	MIR|SINE|MIR	35508	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
128183	chr2	53789101	53789730	+	0	NA	intron (NM_015701, intron 1 of 13)	AluSg|SINE|Alu	2371	NM_015701	27248		NM_015701	ENSG00000068912	ERLEC1	C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB	endoplasmic reticulum lectin 1	protein-coding
213472	chr7	139033751	139034250	+	0	NA	intron (NM_080660, intron 2 of 4)	intron (NM_080660, intron 2 of 4)	2042	NM_080660	92092		NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding
54444	chr12	91811571	91812430	+	0	NA	Intergenic	Intergenic	329713	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
93320	chr17	18182471	18184200	+	0	NA	promoter-TSS (NM_017758)	promoter-TSS (NM_017758)	-493	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
47745	chr12	6528621	6528880	+	0	NA	exon (NM_014865, exon 26 of 32)	exon (NM_014865, exon 26 of 32)	-5767	NR_152150	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
15066	chr1	148450171	148450630	+	0	NA	intron (NR_027468, intron 1 of 4)	intron (NR_027468, intron 1 of 4)	9520	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
143923	chr20	32674321	32674930	+	0	NA	promoter-TSS (NM_182584)	promoter-TSS (NM_182584)	-684	NM_182584	284805		NM_182584	ENSG00000198547	C20orf203	-	chromosome 20 open reading frame 203	protein-coding
45131	chr11	117189021	117189550	+	0	NA	intron (NM_001040455, intron 14 of 25)	intron (NM_001040455, intron 14 of 25)	-10009	NM_001001522	6876		NM_003186	ENSG00000149591	TAGLN	SM22|SM22-alpha|SMCC|TAGLN1|TGLN|WS3-10	transgelin	protein-coding
41139	chr11	65584751	65585380	+	0	NA	exon (NM_001351087, exon 11 of 18)	exon (NM_001351087, exon 11 of 18)	9012	NM_001099409	254102		NM_001099409	ENSG00000173442	EHBP1L1	-	EH domain binding protein 1 like 1	protein-coding
225439	chr9	35095671	35097100	+	0	NA	5' UTR (NM_001201484, exon 1 of 13)	5' UTR (NM_001201484, exon 1 of 13)	164	NM_001201484	84720		NM_032634	ENSG00000165282	PIGO	HPMRS2	phosphatidylinositol glycan anchor biosynthesis class O	protein-coding
164135	chr3	56732321	56733800	+	0	NA	intron (NM_001289698, intron 9 of 10)	AluY|SINE|Alu	42657	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
161283	chr3	39294151	39295250	+	0	NA	Intergenic	Intergenic	-12965	NM_001171174	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
76673	chr15	75704901	75705300	+	0	NA	intron (NM_001897, intron 1 of 9)	intron (NM_001897, intron 1 of 9)	7748	NM_001897	1464		NM_001897	ENSG00000173546	CSPG4	CSPG4A|HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2	chondroitin sulfate proteoglycan 4	protein-coding
185980	chr5	133287521	133287780	+	0	NA	intron (NM_015082, intron 6 of 15)	intron (NM_015082, intron 6 of 15)	140056	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
152379	chr22	20517351	20518580	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	9918	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
172165	chr4	1222471	1222630	+	0	NA	intron (NM_001377193, intron 5 of 9)	intron (NM_001377193, intron 5 of 9)	12430	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
23779	chr1	233304451	233304780	+	0	NA	Intergenic	Intergenic	-8890	NM_014801	80003		NM_014801	ENSG00000135749	PCNX2	PCNXL2	pecanex 2	protein-coding
220767	chr8	102407671	102408350	+	0	NA	intron (NM_001282873, intron 1 of 58)	MER20|DNA|hAT-Charlie	-4329	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
33525	chr10	119217621	119218250	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	10364	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
60436	chr13	41001001	41001400	+	0	NA	intron (NM_001370329, intron 1 of 9)	AluSx1|SINE|Alu	18116	NM_001370332	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
9783	chr1	53553971	53554730	+	0	NA	intron (NM_147193, intron 3 of 9)	MIRc|SINE|MIR	94951	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
48220	chr12	8181321	8181750	+	0	NA	intron (NR_026788, intron 1 of 7)	intron (NR_026788, intron 1 of 7)	1326	NR_026788	440078		NR_026788	ENSG00000226711	FAM66C	-	family with sequence similarity 66 member C	ncRNA
29499	chr10	70598571	70599200	+	0	NA	exon (NM_001083116, exon 3 of 3)	exon (NM_001083116, exon 3 of 3)	3856	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
161912	chr3	45990171	45990730	+	0	NA	intron (NM_024513, intron 1 of 17)	intron (NM_024513, intron 1 of 17)	5374	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
40843	chr11	65027021	65028450	+	0	NA	intron (NM_013306, intron 1 of 7)	CpG	296	NM_147777	29907		NM_013306	ENSG00000110025	SNX15	HSAF001435	sorting nexin 15	protein-coding
239376	chrY	20962271	20962430	+	0	NA	Intergenic	Intergenic	206242	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
159702	chr3	15620101	15620300	+	0	NA	intron (NM_001281725, intron 1 of 3)	MER11A|LTR|ERVK	18231	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
196596	chr6	44225101	44225300	+	0	NA	intron (NM_001078177, intron 1 of 13)	intron (NM_001078177, intron 1 of 13)	1605	NM_001372327	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
2847	chr1	11265171	11265580	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2824	NM_004958	2475		NM_004958	ENSG00000198793	MTOR	FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS	mechanistic target of rapamycin kinase	protein-coding
52671	chr12	56345021	56345280	+	0	NA	intron (NM_001385115, intron 22 of 23)	AluSz|SINE|Alu	6266	NM_016584	51561		NM_016584	ENSG00000110944	IL23A	IL-23|IL-23A|IL23P19|P19|SGRF	interleukin 23 subunit alpha	protein-coding
222837	chr8	142608121	142608380	+	0	NA	Intergenic	Intergenic	6229	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
106140	chr18	9478571	9478730	+	0	NA	intron (NM_006788, intron 1 of 9)	CpG	3137	NM_006788	10928		NM_006788	ENSG00000017797	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
191339	chr6	7115351	7116400	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	7914	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
129090	chr2	65117121	65117950	+	0	NA	intron (NM_004161, intron 1 of 5)	intron (NM_004161, intron 1 of 5)	12571	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
168213	chr3	141255801	141256380	+	0	NA	intron (NM_152282, intron 3 of 7)	intron (NM_152282, intron 3 of 7)	24265	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
206646	chr7	36155301	36155500	+	0	NA	intron (NM_030636, intron 2 of 7)	intron (NM_030636, intron 2 of 7)	2146	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
231162	chr9	129881601	129882300	+	0	NA	TTS (NM_001008563)	TTS (NM_001008563)	12345	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
107750	chr18	50307251	50308630	+	0	NA	Intergenic	Intergenic	-19618	NM_001101654	30827		NM_014593	ENSG00000154832	CXXC1	2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP	CXXC finger protein 1	protein-coding
199944	chr6	127911001	127911200	+	0	NA	intron (NM_001164687, intron 1 of 5).2	L1MC3|LINE|L1	7531	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
168982	chr3	152404271	152404630	+	0	NA	intron (NM_001314057, intron 3 of 11)	intron (NM_001314057, intron 3 of 11)	-63460	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
213565	chr7	139232971	139233130	+	0	NA	intron (NM_173569, intron 1 of 17)	intron (NM_173569, intron 1 of 17)	1813	NM_173569	254048		NM_173569	ENSG00000157741	UBN2	-	ubinuclein 2	protein-coding
54055	chr12	75977521	75978430	+	0	NA	Intergenic	Intergenic	53801	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
35247	chr11	851351	852600	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	7529	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
127614	chr2	43039651	43039950	+	0	NA	promoter-TSS (NR_110585)	promoter-TSS (NR_110585)	-257	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
9109	chr1	45322871	45323750	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3585	NM_032756	84842		NM_032756	ENSG00000186603	HPDL	4-HPPD-L|GLOXD1|NEDSWMA|SPG83	4-hydroxyphenylpyruvate dioxygenase like	protein-coding
201906	chr6	151372071	151372530	+	0	NA	intron (NM_020861, intron 2 of 2)	intron (NM_020861, intron 2 of 2)	19259	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
7961	chr1	37691761	37693000	+	0	NA	promoter-TSS (NM_001256875)	promoter-TSS (NM_001256875)	-136	NM_018101	55143		NM_018101	ENSG00000134690	CDCA8	BOR|BOREALIN|DasraB|MESRGP	cell division cycle associated 8	protein-coding
129483	chr2	69602601	69602800	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	41038	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
81704	chr16	11245971	11247780	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	9307	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
171	chr1	625871	626430	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	2859	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
230446	chr9	128166271	128166830	+	0	NA	intron (NM_001257975, intron 17 of 17)	intron (NM_001257975, intron 17 of 17)	6285	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
147990	chr20	63012721	63012980	+	0	NA	intron (NR_033370, intron 1 of 4)	L1MCa|LINE|L1	3467	NR_033370	63930		NR_033370	ENSG00000272259	LINC01749	-	long intergenic non-protein coding RNA 1749	ncRNA
56683	chr12	120011801	120012890	+	0	NA	intron (NR_147894, intron 3 of 8)	intron (NR_147894, intron 3 of 8)	22501	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
23119	chr1	226689251	226689680	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-14397	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
101150	chr17	65053001	65053580	+	0	NA	intron (NM_001282425, intron 2 of 3)	Tigger4b|DNA|TcMar-Tigger	2484	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
59910	chr13	30842371	30842680	+	0	NA	Intergenic	Intergenic	39319	NR_047012	100874158		NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
107578	chr18	48840551	48840650	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	102207	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
237762	chrX	129754321	129754580	+	0	NA	intron (NM_003399, intron 11 of 20)	intron (NM_003399, intron 11 of 20)	15471	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
201656	chr6	149488571	149488930	+	0	NA	Intergenic	Intergenic	-3736	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
157991	chr22	49852251	49852350	+	0	NA	Intergenic	AluSc|SINE|Alu	-1544	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
117911	chr19	32846151	32846530	+	0	NA	intron (NM_014270, intron 9 of 12)	L1PA4|LINE|L1	23427	NM_001243036	11136		NM_014270	ENSG00000021488	SLC7A9	BAT1|CSNU3	solute carrier family 7 member 9	protein-coding
39143	chr11	50298521	50298780	+	0	NA	promoter-TSS (NR_003034)	promoter-TSS (NR_003034)	-188	NR_003034	441601		NR_003034	ENSG00000291108	SEPTIN7P11	-	septin 7 pseudogene 11	pseudo
168507	chr3	143825351	143826300	+	0	NA	intron (NM_173653, intron 2 of 15)	intron (NM_173653, intron 2 of 15)	22643	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
203867	chr7	1468321	1468750	+	0	NA	Intergenic	Intergenic	-9065	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
133869	chr2	128686551	128686650	+	0	NA	Intergenic	Intergenic	-178000	NR_110278	101927881		NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
44013	chr11	94924201	94924950	+	0	NA	Intergenic	MER75B|DNA|PiggyBac	48981	NM_016403	51503		NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
200553	chr6	136269351	136269650	+	0	NA	exon (NM_001077440, exon 9 of 12)	exon (NM_001077440, exon 9 of 12)	-19189	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
72681	chr15	38549751	38550450	+	0	NA	intron (NM_001128602, intron 2 of 15)	AluSz|SINE|Alu	14714	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
14940	chr1	147628951	147629480	+	0	NA	Intergenic	AluY|SINE|Alu	41309	NR_136634	51205		NM_016361	ENSG00000162836	ACP6	ACPL1|LPAP|PACPL1	acid phosphatase 6, lysophosphatidic	protein-coding
50437	chr12	47686621	47686950	+	0	NA	exon (NM_024604, exon 9 of 17)	exon (NM_024604, exon 9 of 17)	19245	NM_024604	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
184995	chr5	115165951	115166550	+	0	NA	intron (NM_018700, intron 1 of 9)	MER52A|LTR|ERV1	3658	NM_001300759	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
3674	chr1	16492951	16493650	+	0	NA	promoter-TSS (NR_023386)	promoter-TSS (NR_023386)	-599	NR_023386	114819		NR_023386	ENSG00000290842	CROCCP3	CROCCL2|dJ798A10.2	CROCC pseudogene 3	pseudo
235526	chrX	47222721	47223580	+	0	NA	exon (NM_001170460, exon 1 of 16)	exon (NM_001170460, exon 1 of 16)	132	NM_001170460	5127		NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
48421	chr12	9676451	9676900	+	0	NA	intron (NM_001197317, intron 1 of 3)	L1MC1|LINE|L1	6962	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
1885	chr1	6435771	6436150	+	0	NA	intron (NM_031475, intron 2 of 12)	MIRb|SINE|MIR	-6064	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
60103	chr13	36919521	36920280	+	0	NA	intron (NM_005905, intron 1 of 5)	CpG	136	NM_001378621	4093		NM_005905	ENSG00000120693	SMAD9	MADH6|MADH9|PPH2|SMAD8|SMAD8/9|SMAD8A|SMAD8B	SMAD family member 9	protein-coding
50955	chr12	49540001	49541500	+	0	NA	intron (NM_001314030, intron 1 of 14)	intron (NM_001314030, intron 1 of 14)	1720	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
191500	chr6	11234271	11234850	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	-1878	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
153218	chr22	23916251	23916730	+	0	NA	intron (NR_003082, intron 4 of 4)	AluSz|SINE|Alu	-17560	NR_038911	284889		NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA
73212	chr15	41564651	41564900	+	0	NA	intron (NM_006293, intron 5 of 18)	intron (NM_006293, intron 5 of 18)	4803	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
113298	chr19	8560001	8560200	+	0	NA	intron (NM_012335, intron 1 of 27)	intron (NM_012335, intron 1 of 27)	17342	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
33422	chr10	118730951	118731450	+	0	NA	intron (NM_153810, intron 1 of 8)	intron (NM_153810, intron 1 of 8)	23770	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
127713	chr2	43385221	43385900	+	0	NA	intron (NM_022065, intron 29 of 37)	AluY|SINE|Alu	158349	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
110612	chr19	2194801	2195200	+	0	NA	intron (NM_032482, intron 7 of 27)	intron (NM_032482, intron 7 of 27)	31067	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
170285	chr3	184321171	184321500	+	0	NA	exon (NM_001194946, exon 11 of 34)	exon (NM_001194946, exon 11 of 34)	1072	NM_004953	1981		NM_004953	ENSG00000114867	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma 1	protein-coding
150692	chr21	43700971	43701550	+	0	NA	Intergenic	Intergenic	-17869	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
173492	chr4	9363201	9363650	+	0	NA	exon (NM_001242330, exon 1 of 1).5	exon (NM_001242330, exon 1 of 1).5	296	NM_001242329	728386		NM_001242329	ENSG00000227140	USP17L5	-	ubiquitin specific peptidase 17 like family member 5	protein-coding
119821	chr19	41353301	41354980	+	0	NA	promoter-TSS (NM_000660)	promoter-TSS (NM_000660)	-218	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
197016	chr6	53325321	53325630	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	12142	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
194069	chr6	31868121	31868630	+	0	NA	intron (NM_001178045, intron 13 of 20).5	MIRb|SINE|MIR	-5554	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
131848	chr2	98685751	98686050	+	0	NA	intron (NM_012214, intron 2 of 15)	intron (NM_012214, intron 2 of 15)	-22427	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
188574	chr5	157140201	157140650	+	0	NA	intron (NM_004270, intron 1 of 1)	intron (NM_004270, intron 1 of 1)	2350	NM_001100816	9443		NM_004270	ENSG00000155868	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
147646	chr20	62213271	62213430	+	0	NA	Intergenic	Intergenic	6928	NM_007232	11255		NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding
85155	chr16	46554401	46554650	+	0	NA	intron (NR_026556, intron 4 of 16)	LTR13|LTR|ERVK	14572	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
40913	chr11	65193821	65194080	+	0	NA	intron (NM_001198868, intron 10 of 21)	L1M5|LINE|L1	12022	NM_005186	823		NM_005186	ENSG00000014216	CAPN1	CANP|CANP1|CANPL1|SPG76|muCANP|muCL	calpain 1	protein-coding
13194	chr1	112625671	112626250	+	0	NA	intron (NM_006135, intron 1 of 9)	intron (NM_006135, intron 1 of 9)	6128	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
10040	chr1	58486921	58487180	+	0	NA	intron (NM_145243, intron 8 of 8)	L2a|LINE|L2	59676	NM_001379461	1600		NM_021080	ENSG00000173406	DAB1	SCA37	DAB adaptor protein 1	protein-coding
138756	chr2	215750721	215751000	+	0	NA	intron (NR_037195, intron 1 of 9)	intron (NR_037195, intron 1 of 9)	32817	NR_132383	105373869		NR_132383	ENSG00000230838	LINC01614	LCAL4	long intergenic non-protein coding RNA 1614	ncRNA
181020	chr5	35861771	35862350	+	0	NA	intron (NM_002185, intron 2 of 7)	intron (NM_002185, intron 2 of 7)	5169	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
139873	chr2	230657561	230658030	+	0	NA	Intergenic	Intergenic	42734	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
62632	chr13	101101521	101101800	+	0	NA	intron (NM_052867, intron 26 of 43)	intron (NM_052867, intron 26 of 43)	-157296	NR_047015	100874161		NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA
234471	chrX	17788271	17788830	+	0	NA	Intergenic	Intergenic	51057	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
113266	chr19	8513351	8514630	+	0	NA	intron (NM_001146175, intron 1 of 7)	CpG	177	NM_032370	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
88175	chr16	81714151	81714250	+	0	NA	Intergenic	Intergenic	48846	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
158774	chr3	9411871	9412880	+	0	NA	intron (NM_001349451, intron 1 of 25)	intron (NM_001349451, intron 1 of 25)	14760	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
144972	chr20	37202201	37202800	+	0	NA	intron (NM_001324305, intron 5 of 17)	intron (NM_001324305, intron 5 of 17)	-22952	NM_213632	140699		NM_152503	ENSG00000101353	MROH8	C20orf131|C20orf132	maestro heat like repeat family member 8	protein-coding
199208	chr6	111792121	111792950	+	0	NA	intron (NM_002037, intron 2 of 13)	L1ME3A|LINE|L1	-32618	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
94339	chr17	28853771	28853930	+	0	NA	Intergenic	AluJr|SINE|Alu	-1166	NM_001317985	26284		NM_005702	ENSG00000132591	ERAL1	CEGA|ERA|ERA-W|ERAL1A|ERAL1B|H-ERA|HERA-A|HERA-B|PRLTS6	Era like 12S mitochondrial rRNA chaperone 1	protein-coding
193559	chr6	30625201	30625700	+	0	NA	intron (NM_014046, intron 6 of 6).5	intron (NM_014046, intron 6 of 6).5	-1424	NM_024909	79969		NM_024909	ENSG00000137343	ATAT1	C6orf134|MEC17|Nbla00487|TAT|alpha-TAT|alpha-TAT1	alpha tubulin acetyltransferase 1	protein-coding
174514	chr4	40052871	40053400	+	0	NA	intron (NR_027277, intron 1 of 2)	L2c|LINE|L2	-3715	NM_018177	55728		NM_018177	ENSG00000078177	N4BP2	B3BP	NEDD4 binding protein 2	protein-coding
203438	chr7	356801	357200	+	0	NA	Intergenic	Intergenic	-22425	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
221065	chr8	116872271	116872880	+	0	NA	intron (NM_006265, intron 1 of 13)	intron (NM_006265, intron 1 of 13)	-1849	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
214423	chr7	149850171	149850530	+	0	NA	intron (NM_001099220, intron 5 of 7)	intron (NM_001099220, intron 5 of 7)	11975	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
172289	chr4	1564151	1565200	+	0	NA	Intergenic	Intergenic	119316	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
42064	chr11	67482101	67483700	+	0	NA	promoter-TSS (NM_003977)	promoter-TSS (NM_003977)	-126	NM_003977	9049		NM_003977	ENSG00000110711	AIP	ARA9|FKBP16|FKBP37|PITA1|SMTPHN|XAP-2|XAP2	aryl hydrocarbon receptor interacting protein	protein-coding
215025	chr7	152407421	152407680	+	0	NA	intron (NM_170606, intron 1 of 58)	AluSz|SINE|Alu	28453	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
5660	chr1	26308301	26308530	+	0	NA	intron (NM_145345, intron 1 of 14)	MIRb|SINE|MIR	-1711	NM_183008	91544		NM_145345	ENSG00000158062	UBXN11	COA-1|PP2243|SOC|SOCI|UBXD5	UBX domain protein 11	protein-coding
156032	chr22	39958521	39958780	+	0	NA	intron (NM_004810, intron 3 of 7)	intron (NM_004810, intron 3 of 7)	11833	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
225294	chr9	34520621	34521450	+	0	NA	TTS (NM_001281428)	TTS (NM_001281428)	1955	NM_198573	375704		NM_198573	ENSG00000168913	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
186262	chr5	134527301	134528730	+	0	NA	intron (NM_015288, intron 1 of 10)	intron (NM_015288, intron 1 of 10)	1907	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
76900	chr15	77993821	77994450	+	0	NA	promoter-TSS (NR_026998)	promoter-TSS (NR_026998)	90	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
82092	chr16	14310721	14311380	+	0	NA	intron (NR_132983, intron 1 of 1)	intron (NR_132983, intron 1 of 1)	1765	NR_029854	100126355		NR_029854	ENSG00000199130	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a|mir-365a	microRNA 365a	ncRNA
194363	chr6	32967101	32967500	+	0	NA	Intergenic	L2-3_Crp|LINE|L2	-1294	NM_005104	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
31996	chr10	100943671	100944700	+	0	NA	intron (NM_018121, intron 12 of 19)	intron (NM_018121, intron 12 of 19)	-28344	NM_001203244	57715		NM_017893	ENSG00000095539	SEMA4G	-	semaphorin 4G	protein-coding
73724	chr15	45168701	45169100	+	0	NA	intron (NM_001301170, intron 3 of 3)	intron (NM_001301170, intron 3 of 3)	12307	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
77526	chr15	84713601	84714700	+	0	NA	intron (NM_001271920, intron 1 of 6)	AluSc|SINE|Alu	1989	NM_014300	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
47827	chr12	6594451	6595180	+	0	NA	intron (NM_001273, intron 14 of 39)	intron (NM_001273, intron 14 of 39)	11636	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
17004	chr1	156014751	156014850	+	0	NA	intron (NM_003145, intron 4 of 5)	AluSx1|SINE|Alu	6151	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
125097	chr2	9713171	9713330	+	0	NA	Intergenic	AluJo|SINE|Alu	-82253	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
6018	chr1	27097401	27098350	+	0	NA	TTS (NM_003047)	TTS (NM_003047)	57250	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
133735	chr2	127409771	127410000	+	0	NA	Intergenic	AluSz|SINE|Alu	-8542	NM_001375603	5624		NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C, inactivator of coagulation factors Va and VIIIa	protein-coding
159445	chr3	13878001	13879200	+	0	NA	intron (NM_004625, intron 1 of 3)	CpG	1471	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
1587	chr1	3610751	3612450	+	0	NA	promoter-TSS (NM_001409)	promoter-TSS (NM_001409)	-92	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
43809	chr11	86513971	86514130	+	0	NA	intron (NR_147828, intron 4 of 14)	THE1D|LTR|ERVL-MaLR	139163	NM_001156474	60494		NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding
83077	chr16	22371001	22371200	+	0	NA	intron (NM_001802, intron 1 of 4)	AluSc5|SINE|Alu	3519	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
99051	chr17	48910021	48910630	+	0	NA	intron (NM_023079, intron 1 of 6)	intron (NM_023079, intron 1 of 6)	-1342	NR_135674	105371814		NR_135674	ENSG00000293025	LOC105371814	-	uncharacterized LOC105371814	ncRNA
36513	chr11	6417171	6417630	+	0	NA	intron (NM_145689, intron 1 of 13)	L2b|LINE|L2	1694	NM_001164	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
227630	chr9	92875471	92875700	+	0	NA	intron (NM_031486, intron 1 of 4)	intron (NM_031486, intron 1 of 4)	2383	NM_001354536	83744		NM_031486	ENSG00000127081	ZNF484	BA526D8.4	zinc finger protein 484	protein-coding
158673	chr3	5128571	5128930	+	0	NA	intron (NM_018184, intron 1 of 6)	L1ME4a|LINE|L1	6458	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
134255	chr2	135473671	135473930	+	0	NA	intron (NM_032143, intron 2 of 20)	intron (NM_032143, intron 2 of 20)	56785	NM_001286568	84083		NM_032143	ENSG00000121988	ZRANB3	4933425L19Rik|AH2	zinc finger RANBP2-type containing 3	protein-coding
127136	chr2	37665871	37666430	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	5492	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
168886	chr3	152311771	152312030	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	12886	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
61256	chr13	50056601	50056880	+	0	NA	intron (NR_152566, intron 5 of 13)	intron (NR_152566, intron 5 of 13)	-7539	NR_029485	406948		NR_029485	ENSG00000283785	MIR15A	MIRN15A|hsa-mir-15a|miRNA15A|mir-15a	microRNA 15a	ncRNA
55311	chr12	103880551	103880930	+	0	NA	intron (NR_027249, intron 9 of 15)	intron (NR_027249, intron 9 of 15)	-39506	NM_001031701	51559		NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
51319	chr12	51324001	51325200	+	0	NA	promoter-TSS (NM_001364781)	promoter-TSS (NM_001364781)	68	NM_001290007	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
161531	chr3	42610751	42611530	+	0	NA	intron (NM_001349126, intron 2 of 18)	intron (NM_001349126, intron 2 of 18)	-10062	NM_001201572	9117		NM_004206	ENSG00000093183	SEC22C	SEC22L3	SEC22 homolog C, vesicle trafficking protein	protein-coding
189987	chr5	177456201	177456900	+	0	NA	TTS (NM_001375594)	TTS (NM_001375594)	5876	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
224881	chr9	31799851	31800200	+	0	NA	Intergenic	L1MA4|LINE|L1	-418535	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
103109	chr17	77363351	77363450	+	0	NA	intron (NM_006640, intron 1 of 10)	AluSx1|SINE|Alu	-9937	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
233107	chr9	137126171	137126330	+	0	NA	Intergenic	L1MB4|LINE|L1	-11517	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
161816	chr3	45567651	45568080	+	0	NA	Intergenic	Intergenic	-26886	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
216626	chr8	22099851	22100150	+	0	NA	intron (NM_022749, intron 10 of 16)	intron (NM_022749, intron 10 of 16)	9419	NM_024815	79873		NM_024815	ENSG00000275074	NUDT18	MTH3	nudix hydrolase 18	protein-coding
116120	chr19	17320401	17321080	+	0	NA	3' UTR (NM_024050, exon 5 of 5)	3' UTR (NM_024050, exon 5 of 5)	11177	NM_024050	79016		NM_024050	ENSG00000130311	DDA1	C19orf58|PCIA1	DET1 and DDB1 associated 1	protein-coding
34798	chr11	251701	251900	+	0	NA	intron (NM_002817, intron 11 of 12)	intron (NM_002817, intron 11 of 12)	14824	NM_002817	5719		NM_002817	ENSG00000185627	PSMD13	HSPC027|Rpn9|S11|p40.5	proteasome 26S subunit, non-ATPase 13	protein-coding
150918	chr21	44234151	44234450	+	0	NA	intron (NM_015259, intron 4 of 6)	intron (NM_015259, intron 4 of 6)	6643	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
114350	chr19	12289211	12290850	+	0	NA	intron (NM_016264, intron 1 of 3)	intron (NM_016264, intron 1 of 3)	4582	NM_001353551	51710		NM_016264	ENSG00000197857	ZNF44	GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58	zinc finger protein 44	protein-coding
220889	chr8	104622871	104623430	+	0	NA	Intergenic	Intergenic	-34126	NM_013437	29967		NM_013437	ENSG00000147650	LRP12	ALS28|MIG13A|ST7	LDL receptor related protein 12	protein-coding
113683	chr19	10399521	10400100	+	0	NA	intron (NM_007065, intron 1 of 7)	AluSx3|SINE|Alu	3728	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
110998	chr19	3040451	3040950	+	0	NA	intron (NM_001144761, intron 2 of 19)	AluJr|SINE|Alu	6935	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
11089	chr1	85283671	85284230	+	0	NA	Intergenic	MER52A|LTR|ERV1	-7318	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
15081	chr1	148506851	148506950	+	0	NA	Intergenic	Intergenic	-23598	NM_001123068	644591		NM_001123068	ENSG00000236334	PPIAL4G	COAS-2	peptidylprolyl isomerase A like 4G	protein-coding
180647	chr5	17518101	17518580	+	0	NA	Intergenic	Intergenic	-26264	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
218378	chr8	43240651	43241050	+	0	NA	Intergenic	SAR|Satellite|Satellite	-51592	NM_001002920	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
126971	chr2	36266551	36266650	+	0	NA	Intergenic	L1M4b|LINE|L1	88970	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
211937	chr7	112468421	112469000	+	0	NA	intron (NR_120333, intron 8 of 11)	AluSg7|SINE|Alu	-12143	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
147679	chr20	62307521	62308180	+	0	NA	intron (NM_175573, intron 7 of 9)	intron (NM_175573, intron 7 of 9)	4853	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
173985	chr4	26204221	26204980	+	0	NA	intron (NM_001374401, intron 1 of 11)	intron (NM_001374401, intron 1 of 11)	41142	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
71787	chr15	21705401	21706030	+	0	NA	Intergenic	Intergenic	12592	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
51117	chr12	50084501	50086080	+	0	NA	promoter-TSS (NM_003076)	promoter-TSS (NM_003076)	-52	NM_139071	6602		NM_003076	ENSG00000066117	SMARCD1	BAF60A|CRACD1|CSS11|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding
124030	chr19	55489651	55489750	+	0	NA	intron (NM_001144950, intron 3 of 13)	intron (NM_001144950, intron 3 of 13)	1264	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
155556	chr22	38723001	38723850	+	0	NA	intron (NM_004286, intron 5 of 11)	intron (NM_004286, intron 5 of 11)	17481	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
182991	chr5	72194551	72195120	+	0	NA	exon (NM_001324255, exon 4 of 6)	exon (NM_001324255, exon 4 of 6)	15048	NM_001324255	4131		NM_005909	ENSG00000131711	MAP1B	DFNA83|FUTSCH|MAP5|PPP1R102|PVNH9	microtubule associated protein 1B	protein-coding
29993	chr10	73756901	73757500	+	0	NA	intron (NM_198597, intron 3 of 22)	AluSz|SINE|Alu	12828	NM_198597	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
90645	chr17	1664651	1665530	+	0	NA	intron (NM_006445, intron 24 of 42)	AluSx3|SINE|Alu	-15224	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
116674	chr19	18400271	18400630	+	0	NA	Intergenic	AluSc5|SINE|Alu	-2828	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
149477	chr21	31873621	31874500	+	0	NA	intron (NM_014586, intron 1 of 10)	CpG	1040	NM_014586	30811		NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
29822	chr10	72316821	72317480	+	0	NA	Intergenic	Intergenic	37769	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
38747	chr11	46981451	46981900	+	0	NA	intron (NM_001278222, intron 1 of 7)	MIRb|SINE|MIR	44914	NR_103472	79096		NM_024113	ENSG00000149179	CSTPP1	C11orf49	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	protein-coding
169195	chr3	156737501	156737900	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	61036	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
16857	chr1	155742051	155742350	+	0	NA	Intergenic	AluSx|SINE|Alu	-3568	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
61776	chr13	74920971	74921330	+	0	NA	Intergenic	Intergenic	319231	NR_027466	647288		NR_027466	ENSG00000214249	CTAGE11P	-	CTAGE family member 11, pseudogene	pseudo
60078	chr13	33800271	33800500	+	0	NA	Intergenic	Intergenic	-17684	NM_181558	5983		NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
64741	chr14	34545821	34547200	+	0	NA	promoter-TSS (NR_004400).7	promoter-TSS (NR_004400).7	-204	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
224387	chr9	9942951	9943050	+	0	NA	intron (NM_002839, intron 4 of 45)	intron (NM_002839, intron 4 of 45)	143608	NR_135135	105375972		NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
8214	chr1	39676621	39676880	+	0	NA	Intergenic	L2c|LINE|L2	-4712	NM_032526	84618		NM_032526	ENSG00000116981	NT5C1A	CN-I|CN-IA|CN1|CN1A|CNI	5'-nucleotidase, cytosolic IA	protein-coding
184482	chr5	100839321	100839930	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-23060	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
9132	chr1	45486801	45487000	+	0	NA	intron (NM_007170, intron 1 of 10)	AluSp|SINE|Alu	4263	NM_007170	10420		NM_007170	ENSG00000070759	TESK2	-	testis associated actin remodelling kinase 2	protein-coding
53346	chr12	64641301	64641800	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJb|SINE|Alu	-18945	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
57660	chr12	122725851	122726350	+	0	NA	TTS (NM_032554)	TTS (NM_032554)	4744	NM_032554	27198		NM_032554	ENSG00000196917	HCAR1	FKSG80|GPR104|GPR81|HCA1|LACR1|TA-GPCR|TAGPCR	hydroxycarboxylic acid receptor 1	protein-coding
30764	chr10	84326451	84327100	+	0	NA	Intergenic	AluJb|SINE|Alu	-1814	NM_001284241	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
48509	chr12	9888751	9889080	+	0	NA	intron (NM_001190765, intron 3 of 5)	intron (NM_001190765, intron 3 of 5)	7426	NM_001190765	100431172		NM_001190765	ENSG00000256797	KLRF2	NKp65	killer cell lectin like receptor F2	protein-coding
113784	chr19	10550221	10550700	+	0	NA	intron (NR_104024, intron 6 of 9)	L2a|LINE|L2	-1662	NR_031603	100302226		NR_031603	ENSG00000221410	MIR1238	MIRN1238|hsa-mir-1238	microRNA 1238	ncRNA
94137	chr17	28317701	28317900	+	0	NA	Intergenic	Intergenic	-1400	NM_014573	27346		NM_014573	ENSG00000109084	TMEM97	MAC30|S2R|sigma2R	transmembrane protein 97	protein-coding
99826	chr17	55090101	55090530	+	0	NA	intron (NM_178509, intron 16 of 17)	intron (NM_178509, intron 16 of 17)	-121530	NM_001162862	1353		NM_004375	ENSG00000166260	COX11	COX11P|MC4DN23	cytochrome c oxidase copper chaperone COX11	protein-coding
7796	chr1	36247201	36247430	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluSg|SINE|Alu	22872	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
57695	chr12	122851671	122851830	+	0	NA	intron (NM_001303099, intron 7 of 17)	intron (NM_001303099, intron 7 of 17)	16293	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
100477	chr17	61456871	61457630	+	0	NA	intron (NM_001321120, intron 2 of 8)	CpG	762	NM_018488	9496		NM_018488	ENSG00000121075	TBX4	ICPPS|PAPPAS|SPS	T-box transcription factor 4	protein-coding
230479	chr9	128221351	128221650	+	0	NA	intron (NM_001374269, intron 6 of 21)	MIRc|SINE|MIR	-17278	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
136721	chr2	181175071	181175830	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	51613	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
209071	chr7	74786521	74787050	+	0	NA	intron (NM_000265, intron 8 of 10)	intron (NM_000265, intron 8 of 10)	12823	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
119570	chr19	40662601	40664150	+	0	NA	Intergenic	Intergenic	26789	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
116773	chr19	18503251	18504200	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	18345	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
171104	chr3	195505121	195505500	+	0	NA	Intergenic	Intergenic	38015	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
210148	chr7	98239651	98239950	+	0	NA	intron (NM_015395, intron 8 of 25)	intron (NM_015395, intron 8 of 25)	12432	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
42998	chr11	73968351	73969000	+	0	NA	intron (NM_153614, intron 6 of 7)	intron (NM_153614, intron 6 of 7)	14168	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
64978	chr14	37595821	37596230	+	0	NA	promoter-TSS (NM_004496)	promoter-TSS (NM_004496)	396	NM_001310135	319089		NM_001007795	ENSG00000139865	TTC6	C14orf25|NCRNA00291	tetratricopeptide repeat domain 6	protein-coding
166439	chr3	113897301	113897700	+	0	NA	promoter-TSS (NM_001172105)	promoter-TSS (NM_001172105)	0	NM_001172105	54762		NM_017577	ENSG00000178075	GRAMD1C	-	GRAM domain containing 1C	protein-coding
62415	chr13	99296051	99296880	+	0	NA	intron (NM_004951, intron 1 of 1)	intron (NM_004951, intron 1 of 1)	10934	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
1166	chr1	2212121	2213600	+	0	NA	promoter-TSS (NM_001282670)	promoter-TSS (NM_001282670)	-140	NM_001282670	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
105340	chr17	82616501	82616700	+	0	NA	exon (NM_019613, exon 9 of 10)	exon (NM_019613, exon 9 of 10)	31844	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
52209	chr12	54374501	54375750	+	0	NA	intron (NM_001290002, intron 4 of 8)	intron (NM_001290002, intron 4 of 8)	9608	NM_001290001	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
190061	chr5	177597171	177597980	+	0	NA	TTS (NM_017510)	TTS (NM_017510)	-2557	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
86581	chr16	67237871	67238400	+	0	NA	intron (NM_001318202, intron 5 of 23)	intron (NM_001318202, intron 5 of 23)	9346	NM_001318202	29109		NM_013241	ENSG00000135723	FHOD1	FHOS	formin homology 2 domain containing 1	protein-coding
105875	chr18	3245571	3246510	+	0	NA	Intergenic	Intergenic	-1442	NM_001303048	10627		NM_006471	ENSG00000101608	MYL12A	HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B	myosin light chain 12A	protein-coding
122513	chr19	49596821	49597080	+	0	NA	exon (NM_020719, exon 4 of 14)	exon (NM_020719, exon 4 of 14)	5768	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
22054	chr1	211257471	211257630	+	0	NA	Intergenic	Intergenic	-1727	NR_146434	55758		NM_018254	ENSG00000117625	RCOR3	-	REST corepressor 3	protein-coding
171472	chr3	196457371	196458300	+	0	NA	Intergenic	Intergenic	-25408	NM_015562	26043		NM_015562	ENSG00000163960	UBXN7	UBXD7	UBX domain protein 7	protein-coding
58607	chr12	132482721	132483330	+	0	NA	Intergenic	Intergenic	-7126	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
24878	chr10	930151	930900	+	0	NA	intron (NM_001351277, intron 1 of 17)	intron (NM_001351277, intron 1 of 17)	1180	NM_001351277	23185		NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	La ribonucleoprotein 4B	protein-coding
19132	chr1	171531071	171531230	+	0	NA	intron (NM_015172, intron 11 of 33)	L1ME1|LINE|L1	45620	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
124217	chr19	57190851	57192230	+	0	NA	promoter-TSS (NM_003417)	promoter-TSS (NM_003417)	40	NM_003417	9422		NM_003417	ENSG00000083844	ZNF264	-	zinc finger protein 264	protein-coding
194110	chr6	31952251	31952950	+	0	NA	TTS (NM_001710).3	TTS (NM_001710).3	4340	NR_031601	100302242		NR_031601	ENSG00000284446	MIR1236	MIRN1236|hsa-mir-1236	microRNA 1236	ncRNA
232475	chr9	136225321	136226530	+	0	NA	intron (NM_181701, intron 2 of 11)	intron (NM_181701, intron 2 of 11)	19887	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
119243	chr19	39479671	39479830	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-1088	NM_001329559	92609		NM_001001563	ENSG00000105197	TIMM50	MGCA9|TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
21146	chr1	203677001	203677200	+	0	NA	intron (NM_001365784, intron 1 of 20)	MIRb|SINE|MIR	49163	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
119327	chr19	39936901	39937500	+	0	NA	Intergenic	Intergenic	-2574	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
225788	chr9	37485521	37487180	+	0	NA	intron (NM_001282766, intron 1 of 12)	intron (NM_001282766, intron 1 of 12)	402	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
24171	chr1	235875601	235875800	+	0	NA	intron (NM_001301365, intron 1 of 52)	AluJo|SINE|Alu	8008	NM_001301365	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
1355	chr1	2497651	2497750	+	0	NA	intron (NM_001303013, intron 16 of 21)	intron (NM_001303013, intron 16 of 21)	21385	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
22542	chr1	222464771	222466250	+	0	NA	Intergenic	CpG	82594	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
111278	chr19	3551171	3552100	+	0	NA	intron (NM_001287529, intron 1 of 9)	intron (NM_001287529, intron 1 of 9)	5949	NM_001287529	126321		NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501|SLC59B1	major facilitator superfamily domain containing 12	protein-coding
228703	chr9	109010701	109011330	+	0	NA	intron (NM_001286974, intron 1 of 18)	intron (NM_001286974, intron 1 of 18)	2484	NM_001286974	8727		NM_003798	ENSG00000119326	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin alpha like 1	protein-coding
224014	chr9	2799251	2799350	+	0	NA	Intergenic	AluY|SINE|Alu	44795	NM_014878	9933		NM_014878	ENSG00000080608	PUM3	HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5	pumilio RNA binding family member 3	protein-coding
218901	chr8	60687901	60688100	+	0	NA	intron (NM_017780, intron 1 of 37)	intron (NM_017780, intron 1 of 37)	9260	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
126308	chr2	27262501	27263450	+	0	NA	promoter-TSS (NM_003459)	promoter-TSS (NM_003459)	72	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
228954	chr9	113408721	113408980	+	0	NA	exon (NM_001278255, exon 5 of 5)	exon (NM_001278255, exon 5 of 5)	1825	NR_027261	54107		NM_017443	ENSG00000148229	POLE3	CHARAC17|CHRAC17|CHRAC2|YBL1|p17	DNA polymerase epsilon 3, accessory subunit	protein-coding
171565	chr3	196941771	196943650	+	0	NA	promoter-TSS (NM_007362)	promoter-TSS (NM_007362)	36	NM_001355243	152217		NM_138487	ENSG00000270170	NCBP2AS2	HIAR|KRASIM|NCBP2-AS2	NCBP2 antisense 2 (head to head)	protein-coding
222885	chr8	142776271	142776430	+	0	NA	intron (NM_177457, intron 1 of 3)	L2c|LINE|L2	181	NM_001356370	66004		NM_177457	ENSG00000180155	LYNX1	-	Ly6/neurotoxin 1	protein-coding
69893	chr14	99420771	99420990	+	0	NA	intron (NM_032233, intron 6 of 12)	intron (NM_032233, intron 6 of 12)	59979	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
110966	chr19	2948971	2949130	+	0	NA	Intergenic	Intergenic	-4079	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
70462	chr14	102062801	102063880	+	0	NA	Intergenic	Intergenic	23704	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
69922	chr14	99521001	99522380	+	0	NA	intron (NM_001144995, intron 3 of 5)	intron (NM_001144995, intron 3 of 5)	40281	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
107986	chr18	58657271	58657430	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-14115	NM_173844	10892		NM_006785	ENSG00000172175	MALT1	IMD12|MLT|MLT1|PCASP1	MALT1 paracaspase	protein-coding
87789	chr16	75440151	75440450	+	0	NA	Intergenic	AluJb|SINE|Alu	-6797	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
96230	chr17	39791271	39791850	+	0	NA	exon (NM_001257410, exon 4 of 7)	exon (NM_001257410, exon 4 of 7)	-13335	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
135574	chr2	165874421	165874790	+	0	NA	3' UTR (NM_024753, exon 29 of 29)	3' UTR (NM_024753, exon 29 of 29)	-2664	NR_045375	100506124		NR_045375		LOC100506124	-	uncharacterized LOC100506124	ncRNA
228604	chr9	105151751	105151850	+	0	NA	Intergenic	L2c|LINE|L2	-92805	NM_001330731	23446		NM_022109	ENSG00000070214	SLC44A1	CD92|CDW92|CHTL1|CONATOC|CTL1	solute carrier family 44 member 1	protein-coding
218651	chr8	57211401	57211600	+	0	NA	Intergenic	Intergenic	-6776	NR_038235	100507651		NR_038235	ENSG00000253301	LINC01606	-	long intergenic non-protein coding RNA 1606	ncRNA
10611	chr1	67688551	67689180	+	0	NA	TTS (NM_001199742)	TTS (NM_001199742)	3664	NM_001199741	1647		NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
164187	chr3	56815751	56816650	+	0	NA	intron (NM_001289698, intron 2 of 10)	AluJr4|SINE|Alu	-14251	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
229395	chr9	121184951	121186380	+	0	NA	intron (NM_016322, intron 5 of 7)	L1MD2|LINE|L1	-15818	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
23317	chr1	228089121	228090180	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	6500	NM_001024227	375		NM_001658	ENSG00000143761	ARF1	PVNH8	ADP ribosylation factor 1	protein-coding
185756	chr5	132227351	132228330	+	0	NA	promoter-TSS (NM_001365681)	promoter-TSS (NM_001365681)	13	NM_001365678	8974		NM_004199	ENSG00000072682	P4HA2	MYP25|lncRNA-PE	prolyl 4-hydroxylase subunit alpha 2	protein-coding
132251	chr2	102449351	102449750	+	0	NA	intron (NM_003853, intron 10 of 11)	intron (NM_003853, intron 10 of 11)	17261	NR_039930	100616157		NR_039930	ENSG00000264764	MIR4772	mir-4772	microRNA 4772	ncRNA
92546	chr17	8950971	8951600	+	0	NA	intron (NM_001142633, intron 1 of 18)	L1MB3|LINE|L1	14422	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
91142	chr17	3751851	3752050	+	0	NA	intron (NM_002208, intron 14 of 30)	intron (NM_002208, intron 14 of 30)	28047	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
82322	chr16	15704451	15705150	+	0	NA	intron (NM_001040114, intron 41 of 41).2	intron (NM_001040114, intron 41 of 41).2	54555	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
102778	chr17	76300671	76301030	+	0	NA	intron (NM_032134, intron 3 of 18)	AluSx1|SINE|Alu	6830	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
232562	chr9	136360521	136361150	+	0	NA	non-coding (NR_073565, exon 3 of 3)	non-coding (NR_073565, exon 3 of 3)	2909	NM_001080849	728489		NM_001080849	ENSG00000213221	DNLZ	C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2	DNL-type zinc finger	protein-coding
46284	chr11	124863951	124864480	+	0	NA	Intergenic	Intergenic	-1217	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
203361	chr6	170316101	170316300	+	0	NA	intron (NM_001286381, intron 1 of 8).2	MIRb|SINE|MIR	9442	NM_032448	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
9562	chr1	51728901	51730300	+	0	NA	promoter-TSS (NM_148905)	promoter-TSS (NM_148905)	-250	NM_148905	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
183240	chr5	76386671	76387030	+	0	NA	Intergenic	Intergenic	-16435	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
1704	chr1	5329151	5329500	+	0	NA	Intergenic	Intergenic	533416	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
11955	chr1	93905771	93906030	+	0	NA	intron (NM_002061, intron 1 of 6)	MER112|DNA|hAT-Charlie	3530	NM_002061	2730		NM_002061	ENSG00000023909	GCLM	GLCLR	glutamate-cysteine ligase modifier subunit	protein-coding
99447	chr17	50134471	50135180	+	0	NA	3' UTR (NM_032595, exon 10 of 10)	3' UTR (NM_032595, exon 10 of 10)	-4665	NM_174920	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
156784	chr22	41903051	41903630	+	0	NA	intron (NR_103834, intron 20 of 21)	L2b|LINE|L2	2396	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
77655	chr15	85504401	85505280	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	-115110	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
100499	chr17	62007801	62008400	+	0	NA	intron (NM_005121, intron 9 of 29)	AluY|SINE|Alu	57178	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
22746	chr1	224358451	224358550	+	0	NA	intron (NR_102347, intron 1 of 3)	MER30|DNA|hAT-Charlie	1621	NM_014184	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
230497	chr9	128248171	128248800	+	0	NA	intron (NM_001374269, intron 18 of 21)	intron (NM_001374269, intron 18 of 21)	-3455	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
74473	chr15	59800171	59800680	+	0	NA	Intergenic	L1M7|LINE|L1	-111105	NM_001368060	663		NM_004330	ENSG00000140299	BNIP2	BNIP-2|NIP2	BCL2 interacting protein 2	protein-coding
127278	chr2	38723801	38724980	+	0	NA	intron (NM_138801, intron 4 of 6)	L2c|LINE|L2	26971	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
154486	chr22	35646471	35647230	+	0	NA	Intergenic	Intergenic	-1596	NM_030641	80830		NM_030641	ENSG00000221963	APOL6	APOL-VI|APOLVI	apolipoprotein L6	protein-coding
191557	chr6	11714151	11715080	+	0	NA	intron (NM_032744, intron 5 of 5)	intron (NM_032744, intron 5 of 5)	64188	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
138635	chr2	210195501	210195930	+	0	NA	intron (NM_001608, intron 8 of 10)	intron (NM_001608, intron 8 of 10)	-24306	NM_152519	151050		NM_152519	ENSG00000144445	KANSL1L	C2orf67|MSL1v2	KAT8 regulatory NSL complex subunit 1 like	protein-coding
131438	chr2	96306921	96307180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1504	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
179271	chr4	176309151	176309250	+	0	NA	Intergenic	Intergenic	-10766	NM_021928	60559		NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22|SPC22/23|SPC23|SPC3|YLR066W	signal peptidase complex subunit 3	protein-coding
146135	chr20	48638021	48639030	+	0	NA	intron (NM_020820, intron 30 of 39)	intron (NM_020820, intron 30 of 39)	189474	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
153773	chr22	29576771	29577130	+	0	NA	intron (NM_001202502, intron 1 of 9)	intron (NM_001202502, intron 1 of 9)	4146	NM_001202502	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
51040	chr12	49765921	49766280	+	0	NA	Intergenic	AluJr|SINE|Alu	24291	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
142642	chr20	5749221	5749500	+	0	NA	Intergenic	AluY|SINE|Alu	-1027	NM_001303478	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
1536	chr1	3319971	3320280	+	0	NA	intron (NM_199454, intron 3 of 16)	intron (NM_199454, intron 3 of 16)	-134540	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
92308	chr17	8123001	8123880	+	0	NA	intron (NM_032580, intron 1 of 3)	CpG-10664	666	NM_032580	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
74325	chr15	58461001	58461200	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	29109	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
81513	chr16	8969251	8969750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5594	NM_003470	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
220253	chr8	97642201	97642400	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1884	NM_178812	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
212235	chr7	121329551	121330450	+	0	NA	intron (NM_057168, intron 2 of 3)	CpG-26334	1000	NM_057168	51384		NM_016087	ENSG00000002745	WNT16	-	Wnt family member 16	protein-coding
139091	chr2	218882071	218882480	+	0	NA	exon (NM_025216, exon 2 of 4)	exon (NM_025216, exon 2 of 4)	1423	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
192012	chr6	16403801	16404000	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	165313	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
166876	chr3	123884021	123884750	+	0	NA	promoter-TSS (NM_053026)	promoter-TSS (NM_053026)	-53	NM_053028	4638		NM_005965	ENSG00000065534	MYLK	AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MMIHS|MMIHS1|MSTP083|MYLK-L|MYLK1|smMLCK	myosin light chain kinase	protein-coding
168550	chr3	146546321	146546880	+	0	NA	Intergenic	Charlie3|DNA|hAT-Charlie	-1993	NM_021105	5359		NM_021105	ENSG00000188313	PLSCR1	MMTRA1B	phospholipid scramblase 1	protein-coding
230511	chr9	128278451	128278550	+	0	NA	intron (NM_001040011, intron 2 of 4)	AluSx|SINE|Alu	2224	NM_001040011	375757		NM_001040011	ENSG00000175854	SWI5	C9orf119|SAE3	SWI5 homologous recombination repair protein	protein-coding
38969	chr11	47548671	47548900	+	0	NA	intron (NM_001376458, intron 1 of 13)	AluSx|SINE|Alu	4347	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
219403	chr8	70606201	70606730	+	0	NA	intron (NM_001317804, intron 2 of 11)	AluJr|SINE|Alu	1204	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
156683	chr22	41663801	41665280	+	0	NA	TTS (NM_001469)	TTS (NM_001469)	24327	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
101107	chr17	64998071	64998230	+	0	NA	Intergenic	AluSz6|SINE|Alu	-22565	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
231109	chr9	129811971	129812530	+	0	NA	TTS (NM_014506)	TTS (NM_014506)	9066	NM_001317894	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
52925	chr12	57244801	57245500	+	0	NA	exon (NM_001286257, exon 4 of 9)	exon (NM_001286257, exon 4 of 9)	-4458	NM_020142	56901		NM_020142	ENSG00000185633	NDUFA4L2	COXFA4L2|MISTRH|NUOMS	NDUFA4 mitochondrial complex associated like 2	protein-coding
194228	chr6	32252601	32253400	+	0	NA	Intergenic	HAL1|LINE|L1	-2173	NR_136245	101929163		NM_001013681	ENSG00000225914	TSBP1-AS1	-	TSBP1 and BTNL2 antisense RNA 1	ncRNA
230836	chr9	129080321	129082130	+	0	NA	intron (NM_001135917, intron 1 of 6)	CpG	114	NR_072983	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
170474	chr3	185934871	185936130	+	0	NA	intron (NM_004593, intron 1 of 8)	intron (NM_004593, intron 1 of 8)	2514	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
86996	chr16	68233101	68233700	+	0	NA	promoter-TSS (NR_106831)	promoter-TSS (NR_106831)	99	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
147697	chr20	62325001	62325750	+	0	NA	exon (NM_005560, exon 41 of 80)	exon (NM_005560, exon 41 of 80)	7182	NR_039915	100616340		NR_039915	ENSG00000284074	MIR4758	-	microRNA 4758	ncRNA
47628	chr12	6168771	6169280	+	0	NA	Intergenic	Intergenic	-30921	NM_001330312	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
56644	chr12	118757651	118757750	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	3979	NR_134998	105370014		NR_134998	ENSG00000256750	LINC02423	-	long intergenic non-protein coding RNA 2423	ncRNA
159769	chr3	16299921	16302330	+	0	NA	intron (NM_001352980, intron 7 of 9)	intron (NM_001352980, intron 7 of 9)	35913	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
149499	chr21	32569221	32570330	+	0	NA	intron (NR_146638, intron 9 of 10)	CpG	15748	NM_144659	140290		NM_018277	ENSG00000242220	TCP10L	C21orf77|LINC00846|PRED77|TCP10A-1|TCP10A-2	t-complex 10 like	protein-coding
92742	chr17	14320901	14321100	+	0	NA	intron (NM_006041, intron 1 of 1)	intron (NM_006041, intron 1 of 1)	17260	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
153674	chr22	29040271	29041000	+	0	NA	intron (NM_001206998, intron 2 of 8)	intron (NM_001206998, intron 2 of 8)	-9159	NR_046851	100874123		NR_046851	ENSG00000177993	ZNRF3-AS1	-	ZNRF3 antisense RNA 1	ncRNA
39184	chr11	57458201	57459840	+	0	NA	Intergenic	Intergenic	-1508	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
145387	chr20	41316961	41319400	+	0	NA	promoter-TSS (NM_001384315)	promoter-TSS (NM_001384315)	-449	NM_001384317	23051		NM_015035	ENSG00000174306	ZHX3	TIX1	zinc fingers and homeoboxes 3	protein-coding
104336	chr17	80967571	80968250	+	0	NA	non-coding (NR_148968, exon 2 of 2)	non-coding (NR_148968, exon 2 of 2)	3303	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
76402	chr15	74632951	74633280	+	0	NA	intron (NM_001351378, intron 8 of 8)	intron (NM_001351378, intron 8 of 8)	17279	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
185552	chr5	131363401	131363780	+	0	NA	intron (NM_001038702, intron 2 of 4)	AluSq2|SINE|Alu	99537	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
11437	chr1	89804421	89804980	+	0	NA	Intergenic	Intergenic	-16332	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
44358	chr11	102450271	102450430	+	0	NA	intron (NM_052932, intron 1 of 4)	MLT1K|LTR|ERVL-MaLR	2415	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
201735	chr6	149863201	149865260	+	0	NA	non-coding (NR_045126, exon 1 of 2)	non-coding (NR_045126, exon 1 of 2)	129	NM_032832	84918		NM_032832	ENSG00000120256	LRP11	MANSC3|bA350J20.3	LDL receptor related protein 11	protein-coding
232766	chr9	136674401	136674600	+	0	NA	intron (NM_006412, intron 5 of 5)	MIRb|SINE|MIR	3898	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
25005	chr10	3203501	3203900	+	0	NA	Intergenic	Intergenic	-30859	NM_001242307	10531		NM_014889	ENSG00000107959	PITRM1	MP1|PreP|SCAR30	pitrilysin metallopeptidase 1	protein-coding
72187	chr15	29825221	29825530	+	0	NA	intron (NM_001355012, intron 2 of 28).3	intron (NM_001355012, intron 2 of 28).3	-2907	NM_001355015	7082		NM_003257	ENSG00000104067	TJP1	ZO-1	tight junction protein 1	protein-coding
53508	chr12	66698301	66698700	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-19424	NM_001178074	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
122132	chr19	48839901	48840280	+	0	NA	intron (NM_020904, intron 17 of 19)	AluSz|SINE|Alu	-3599	NM_016246	51171		NM_016246	ENSG00000087076	HSD17B14	DHRS10|SDR47C1|retSDR3	hydroxysteroid 17-beta dehydrogenase 14	protein-coding
108131	chr18	62420371	62421150	+	0	NA	Intergenic	L3|LINE|CR1	95450	NM_003839	8792		NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCE-R|TRANCER	TNF receptor superfamily member 11a	protein-coding
52717	chr12	56596121	56596600	+	0	NA	TTS (NM_002898)	TTS (NM_002898)	33966	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
41882	chr11	67245821	67246080	+	0	NA	intron (NM_012308, intron 14 of 20)	intron (NM_012308, intron 14 of 20)	5936	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
159835	chr3	16495871	16496700	+	0	NA	intron (NM_015150, intron 1 of 9)	MER63A|DNA|hAT-Blackjack	17414	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
33920	chr10	124602271	124602530	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-101628	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
98686	chr17	47879171	47879330	+	0	NA	Intergenic	Intergenic	16566	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
189569	chr5	175477301	175477500	+	0	NA	Intergenic	Intergenic	-1160	NM_001322978	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
133656	chr2	127054851	127054950	+	0	NA	intron (NM_139344, intron 11 of 17)	intron (NM_139344, intron 11 of 17)	27165	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
145014	chr20	37804701	37804900	+	0	NA	intron (NM_030877, intron 11 of 15)	intron (NM_030877, intron 11 of 15)	-98327	NM_080607	128434		NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding
201869	chr6	150635851	150636550	+	0	NA	intron (NR_138140, intron 1 of 2)	intron (NR_138140, intron 1 of 2)	3236	NR_138140	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
131867	chr2	98708901	98709300	+	0	NA	intron (NM_012214, intron 2 of 15)	MIRb|SINE|MIR	22032	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
126645	chr2	28894141	28895900	+	0	NA	intron (NM_015131, intron 1 of 17)	CpG	353	NM_015131	23160		NM_015131	ENSG00000163811	WDR43	NET12|UTP5	WD repeat domain 43	protein-coding
233150	chr9	137168021	137168530	+	0	NA	TTS (NR_037416)	TTS (NR_037416)	995	NR_037416	100500811		NR_037416	ENSG00000263697	MIR3621	-	microRNA 3621	ncRNA
155752	chr22	39204351	39204650	+	0	NA	Intergenic	L2a|LINE|L2	36409	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
195644	chr6	37864751	37865050	+	0	NA	intron (NM_021943, intron 1 of 5)	AluSx1|SINE|Alu	45173	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
227937	chr9	94372471	94373250	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1709	NM_032558	84641		NM_032558	ENSG00000148110	MFSD14B	HIATL1	major facilitator superfamily domain containing 14B	protein-coding
61572	chr13	71674951	71675150	+	0	NA	intron (NM_001366712, intron 2 of 11)	intron (NM_001366712, intron 2 of 11)	192142	NM_004392	1602		NM_004392	ENSG00000276644	DACH1	DACH	dachshund family transcription factor 1	protein-coding
10319	chr1	64889571	64889730	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	76899	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
44196	chr11	96272001	96272200	+	0	NA	intron (NM_032427, intron 1 of 4)	L2a|LINE|L2	-69338	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
62176	chr13	97368201	97368400	+	0	NA	intron (NM_001382690, intron 9 of 9)	AluJb|SINE|Alu	-65869	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
205594	chr7	21543471	21543800	+	0	NA	intron (NM_001277115, intron 1 of 81)	CpG	596	NM_001277115	8701		NM_001277115	ENSG00000105877	DNAH11	CILD7|DNAHBL|DNAHC11|DNHBL|DPL11	dynein axonemal heavy chain 11	protein-coding
189680	chr5	176400651	176400950	+	0	NA	intron (NM_007097, intron 2 of 5)	intron (NM_007097, intron 2 of 5)	10023	NM_001364126	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
67180	chr14	68820351	68821380	+	0	NA	Intergenic	L1MB5|LINE|L1	-24622	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
133906	chr2	130184271	130184430	+	0	NA	intron (NM_001330282, intron 3 of 3)	intron (NM_001330282, intron 3 of 3)	2088	NM_025029	80097		NM_025029	ENSG00000152082	MZT2B	FAM128B|MOZART2B	mitotic spindle organizing protein 2B	protein-coding
170102	chr3	183115921	183116850	+	0	NA	Intergenic	Intergenic	-16798	NR_120639	56922		NM_020166	ENSG00000078070	MCCC1	MCC-B|MCCA|MCCCalpha	methylcrotonyl-CoA carboxylase subunit 1	protein-coding
232798	chr9	136707921	136708430	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	-4397	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
124854	chr2	7867901	7868130	+	0	NA	Intergenic	Intergenic	31640	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
114801	chr19	13790221	13791400	+	0	NA	Intergenic	AluSp|SINE|Alu	-4633	NM_001367834	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
73841	chr15	49471471	49471830	+	0	NA	intron (NM_002009, intron 2 of 3)	L3|LINE|CR1	48408	NM_002009	2252		NM_002009	ENSG00000140285	FGF7	HBGF-7|KGF	fibroblast growth factor 7	protein-coding
28682	chr10	60727451	60728550	+	0	NA	intron (NM_001204403, intron 1 of 43)	MER63B|DNA|hAT-Blackjack	5528	NM_001204403	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
195743	chr6	39455051	39455150	+	0	NA	intron (NM_001289021, intron 12 of 21)	L1PA2|LINE|L1	-23710	NM_001351566	221458		NM_145027	ENSG00000164627	KIF6	C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1	kinesin family member 6	protein-coding
235895	chrX	52934671	52935730	+	0	NA	Intergenic	CpG	21555	NM_001099684	727866		NM_001099684	ENSG00000179304	FAM156B	TMEM29B	family with sequence similarity 156 member B	protein-coding
114665	chr19	13060901	13061950	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	36646	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
162933	chr3	49466601	49467730	+	0	NA	Intergenic	5S|rRNA|rRNA	-1538	NM_001177643	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
203848	chr7	1450371	1450730	+	0	NA	intron (NM_182924, intron 1 of 16)	intron (NM_182924, intron 1 of 16)	8920	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
8174	chr1	39556971	39557280	+	0	NA	non-coding (NR_003929, exon 2 of 9)	non-coding (NR_003929, exon 2 of 9)	2573	NR_003929	728448		NR_003929	ENSG00000291129	PPIEL	PPIEP1	peptidylprolyl isomerase E like (pseudogene)	pseudo
20394	chr1	198172901	198173600	+	0	NA	intron (NM_133494, intron 1 of 9)	AluJr4|SINE|Alu	16252	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
174963	chr4	49323051	49323580	+	0	NA	Intergenic	ACRO1|Satellite|acro	336673	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
183573	chr5	80155101	80155950	+	0	NA	intron (NM_001174072, intron 8 of 11)	AluSx|SINE|Alu	-71860	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
129158	chr2	66481271	66481430	+	0	NA	intron (NM_002398, intron 7 of 12)	intron (NM_002398, intron 7 of 12)	-41020	NR_046625	100873998		NR_046625	ENSG00000230749	MEIS1-AS2	MEIS1-AS1	MEIS1 antisense RNA 2	ncRNA
144788	chr20	36635801	36636200	+	0	NA	intron (NM_175077, intron 2 of 7)	L2b|LINE|L2	10196	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
177151	chr4	108131651	108132280	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	34832	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
102495	chr17	75756751	75757450	+	0	NA	TTS (NM_000154)	TTS (NM_000154)	8092	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
14442	chr1	144400601	144400930	+	0	NA	Intergenic	Intergenic	-11811	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
73148	chr15	41402171	41403350	+	0	NA	promoter-TSS (NM_016013)	promoter-TSS (NM_016013)	-264	NM_016013	51103		NM_016013	ENSG00000137806	NDUFAF1	CGI-65|CGI65|CIA30|MC1DN11	NADH:ubiquinone oxidoreductase complex assembly factor 1	protein-coding
84853	chr16	31135371	31135980	+	0	NA	promoter-TSS (NM_002773)	promoter-TSS (NM_002773)	52	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
125046	chr2	9610451	9610830	+	0	NA	intron (NM_006826, intron 2 of 5)	AluSp|SINE|Alu	20357	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
186584	chr5	138500471	138500630	+	0	NA	Intergenic	L1ME1|LINE|L1	35071	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
176741	chr4	101416571	101417200	+	0	NA	Intergenic	MER52A|LTR|ERV1	69108	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
210239	chr7	99377851	99378250	+	0	NA	intron (NM_005720, intron 1 of 9)	intron (NM_005720, intron 1 of 9)	3320	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
36704	chr11	8912601	8912800	+	0	NA	intron (NR_045417, intron 2 of 4)	intron (NR_045417, intron 2 of 4)	1511	NM_020642	56672		NM_020642	ENSG00000166452	AKIP1	BCA3|C11orf17	A-kinase interacting protein 1	protein-coding
59412	chr13	25288401	25288730	+	0	NA	Intergenic	Intergenic	-1077	NM_001385234	9107		NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
54989	chr12	96347551	96348600	+	0	NA	intron (NM_002595, intron 1 of 16)	L1MB4|LINE|L1	52364	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
59635	chr13	28135901	28136100	+	0	NA	TTS (NR_029383)	TTS (NR_029383)	-2545	NM_175854	255967		NM_175854	ENSG00000152520	PAN3	-	poly(A) specific ribonuclease subunit PAN3	protein-coding
200085	chr6	130165151	130165450	+	0	NA	intron (NM_001258275, intron 10 of 13)	intron (NM_001258275, intron 10 of 13)	50585	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
24677	chr1	247127601	247128130	+	0	NA	intron (NM_001243740, intron 3 of 3)	LTR2|LTR|ERV1	-15448	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
217065	chr8	23449051	23449350	+	0	NA	intron (NM_004901, intron 2 of 12)	intron (NM_004901, intron 2 of 12)	8447	NM_004901	9583		NM_004901	ENSG00000197217	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
116218	chr19	17513601	17514380	+	0	NA	intron (NM_012088, intron 1 of 4)	L2b|LINE|L2	-2101	NR_147835	100507551		NR_147835	ENSG00000269439	PGLS-DT	-	PGLS divergent transcript	ncRNA
156298	chr22	40520621	40520880	+	0	NA	intron (NM_001282661, intron 3 of 13)	L1MB7|LINE|L1	-1050	NR_109965	101927257		NR_109965	ENSG00000232564	MRTFA-AS1	-	MRTFA antisense RNA 1	ncRNA
213751	chr7	140452051	140452150	+	0	NA	TTS (NM_013446)	TTS (NM_013446)	27405	NM_013446	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
58808	chr12	132807771	132807930	+	0	NA	intron (NM_005895, intron 5 of 23)	intron (NM_005895, intron 5 of 23)	20539	NM_005895	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
223704	chr8	144442351	144442750	+	0	NA	intron (NM_013432, intron 5 of 25)	intron (NM_013432, intron 5 of 25)	1890	NM_013432	4796		NM_013432	ENSG00000160949	TONSL	IKBR|NFKBIL2|SEMDSP	tonsoku like, DNA repair protein	protein-coding
69420	chr14	94071271	94071850	+	0	NA	intron (NM_020414, intron 2 of 8).2	AluSx1|SINE|Alu	9642	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
70960	chr14	104689201	104690330	+	0	NA	intron (NM_032714, intron 1 of 4)	CpG	147	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
214231	chr7	148864251	148864550	+	0	NA	intron (NM_001203248, intron 1 of 19)	intron (NM_001203248, intron 1 of 19)	19085	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
202383	chr6	157825701	157825900	+	0	NA	intron (NM_016224, intron 1 of 17)	intron (NM_016224, intron 1 of 17)	2554	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
58101	chr12	124744821	124745080	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	94721	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
176412	chr4	89157701	89157900	+	0	NA	Intergenic	MLT2F|LTR|ERVL	46267	NM_145715	166815		NM_145715	ENSG00000180346	TIGD2	HEL106	tigger transposable element derived 2	protein-coding
54238	chr12	81992571	81992830	+	0	NA	non-coding (NR_110089, exon 3 of 3)	non-coding (NR_110089, exon 3 of 3)	38981	NR_110089	101928449		NR_110089	ENSG00000257747	LINC02426	-	long intergenic non-protein coding RNA 2426	ncRNA
181593	chr5	43477201	43477800	+	0	NA	intron (NM_001377395, intron 2 of 4)	AluSx3|SINE|Alu	6365	NM_001377401	64417		NM_022483	ENSG00000151881	TMEM267	C5orf28	transmembrane protein 267	protein-coding
70995	chr14	104722701	104722900	+	0	NA	TTS (NM_001031714)	TTS (NM_001031714)	-1429	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
209893	chr7	91942321	91942580	+	0	NA	intron (NM_147185, intron 1 of 49)	intron (NM_147185, intron 1 of 49)	1588	NM_005751	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
180696	chr5	21490651	21490950	+	0	NA	intron (NR_027026, intron 3 of 4)	AluSx|SINE|Alu	31320	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
166849	chr3	123203621	123204050	+	0	NA	intron (NM_012430, intron 1 of 6)	intron (NM_012430, intron 1 of 6)	1892	NM_012430	26984		NM_012430	ENSG00000121542	SEC22A	SEC22L2	SEC22 homolog A, vesicle trafficking protein	protein-coding
132314	chr2	105328421	105328880	+	0	NA	intron (NM_001328646, intron 1 of 11)	intron (NM_001328646, intron 1 of 11)	1006	NR_137328	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
5066	chr1	24661851	24662150	+	0	NA	intron (NR_159382, intron 12 of 17)	AluSg|SINE|Alu	18421	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
96954	chr17	42191771	42191930	+	0	NA	intron (NM_032484, intron 5 of 9)	AluSz|SINE|Alu	2644	NM_001142623	84514		NM_032484	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
64824	chr14	35049551	35050230	+	0	NA	intron (NM_173607, intron 1 of 4)	intron (NM_173607, intron 1 of 4)	3618	NM_173607	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
198862	chr6	109390801	109391200	+	0	NA	non-coding (NR_104429, exon 9 of 9)	non-coding (NR_104429, exon 9 of 9)	-8188	NM_001142402	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
211630	chr7	106071251	106072180	+	0	NA	Intergenic	Intergenic	40597	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
50089	chr12	44840121	44840780	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	35211	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
131361	chr2	96182571	96182730	+	0	NA	Intergenic	AluSp|SINE|Alu	-25766	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
78541	chr15	92965301	92965700	+	0	NA	intron (NM_001271, intron 16 of 38)	AluY|SINE|Alu	61101	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
111136	chr19	3277651	3278380	+	0	NA	intron (NM_021938, intron 4 of 12)	intron (NM_021938, intron 4 of 12)	52737	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
180940	chr5	34918901	34919380	+	0	NA	intron (NM_018321, intron 2 of 9)	AluJb|SINE|Alu	3429	NM_018321	55299		NM_018321	ENSG00000113460	BRIX1	BRIX|BXDC2	biogenesis of ribosomes BRX1	protein-coding
27933	chr10	42068571	42068930	+	0	NA	Intergenic	Intergenic	299295	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
88416	chr16	84696871	84697350	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-2890	NR_073577	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
10117	chr1	59125201	59125750	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	21332	NR_027120	729467		NR_027120	ENSG00000224609	HSD52	-	uncharacterized LOC729467	ncRNA
820	chr1	1565451	1565950	+	0	NA	intron (NM_014188, intron 1 of 4)	intron (NM_014188, intron 1 of 4)	9163	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
223603	chr8	144307971	144308330	+	0	NA	intron (NM_005526, intron 1 of 12)	intron (NM_005526, intron 1 of 12)	9165	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
110809	chr19	2470821	2471280	+	0	NA	Intergenic	AluJo|SINE|Alu	-5077	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
125373	chr2	11152051	11152150	+	0	NA	TTS (NM_182500)	TTS (NM_182500)	-3272	NM_001282710	130814		NM_152391	ENSG00000162976	SLC66A3	C2orf22|PQLC3	solute carrier family 66 member 3	protein-coding
74060	chr15	52558151	52558730	+	0	NA	intron (NM_006628, intron 1 of 2)	AluJb|SINE|Alu	10392	NM_001330309	10776		NM_006628	ENSG00000128989	ARPP19	ARPP-16|ARPP-19|ARPP16|ENSAL	cAMP regulated phosphoprotein 19	protein-coding
91218	chr17	3924921	3925830	+	0	NA	3' UTR (NM_005173, exon 21 of 21)	3' UTR (NM_005173, exon 21 of 21)	-8910	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
77722	chr15	85701601	85702780	+	0	NA	intron (NM_007200, intron 17 of 36)	AluSx3|SINE|Alu	56535	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
13002	chr1	111145701	111145900	+	0	NA	intron (NR_138484, intron 1 of 9)	intron (NR_138484, intron 1 of 9)	5577	NR_138484	10390		NM_006090	ENSG00000134255	CEPT1	-	choline/ethanolamine phosphotransferase 1	protein-coding
34433	chr10	132415301	132415830	+	0	NA	intron (NM_138499, intron 2 of 2)	intron (NM_138499, intron 2 of 2)	18365	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
75816	chr15	69395801	69396000	+	0	NA	intron (NM_017705, intron 6 of 8)	intron (NM_017705, intron 6 of 8)	-18449	NR_160295	9493		NM_004856	ENSG00000137807	KIF23	CDA3|CDAIII|CDAN3|CDAN3A|CHO1|KNSL5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
31581	chr10	97338871	97339230	+	0	NA	Intergenic	LTR7Y|LTR|ERV1	-4321	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
45517	chr11	118703401	118704130	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-24115	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
114307	chr19	11887351	11888580	+	0	NA	exon (NM_001364730, exon 1 of 4)	exon (NM_001364730, exon 1 of 4)	183	NM_021915	7620		NM_021915	ENSG00000198429	ZNF69	Cos5|hZNF3	zinc finger protein 69	protein-coding
35589	chr11	1746971	1747430	+	0	NA	intron (NM_001170820, intron 2 of 2)	intron (NM_001170820, intron 2 of 2)	3395	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
237598	chrX	123959721	123960980	+	0	NA	promoter-TSS (NM_001375375)	promoter-TSS (NM_001375375)	-210	NM_001042749	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
24368	chr1	241611071	241611430	+	0	NA	intron (NM_014322, intron 1 of 3)	intron (NM_014322, intron 1 of 3)	24944	NM_001821	1122		NM_001821	ENSG00000203668	CHML	REP2	CHM like Rab escort protein	protein-coding
74095	chr15	52788271	52788950	+	0	NA	intron (NM_004498, intron 1 of 1)	CpG	1726	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
223953	chr9	1047721	1048500	+	0	NA	promoter-TSS (NR_110643)	promoter-TSS (NR_110643)	-33	NR_110643	102800446		NR_110643		LINC01230	TCONS_00015639|linc-DMRT2|lnc-DRMT2	long intergenic non-protein coding RNA 1230	ncRNA
72389	chr15	31376801	31377580	+	0	NA	3' UTR (NM_015995, exon 2 of 2)	3' UTR (NM_015995, exon 2 of 2)	50355	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
193385	chr6	30351301	30351950	+	0	NA	Intergenic	AluY|SINE|Alu	6469	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
155880	chr22	39512271	39512650	+	0	NA	exon (NM_001304564, exon 5 of 7)	exon (NM_001304564, exon 5 of 7)	-8099	NM_001675	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
82104	chr16	14564801	14565200	+	0	NA	intron (NM_002582, intron 18 of 23)	intron (NM_002582, intron 18 of 23)	65260	NM_001134477	5073		NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding
102213	chr17	75206771	75206930	+	0	NA	intron (NM_001303276, intron 1 of 17)	AluY|SINE|Alu	1171	NM_024844	79902		NM_024844	ENSG00000125450	NUP85	FROUNT|NPHS17|Nup75	nucleoporin 85	protein-coding
143121	chr20	23441801	23442500	+	0	NA	intron (NM_138283, intron 2 of 3)	intron (NM_138283, intron 2 of 3)	2465	NM_138283	128817		NM_138283	ENSG00000125823	CSTL1	CTES1|RCET11|dJ322G13.4	cystatin like 1	protein-coding
210167	chr7	98287451	98288280	+	0	NA	intron (NM_001159491, intron 2 of 2)	intron (NM_001159491, intron 2 of 2)	6179	NM_015379	25798		NM_015379	ENSG00000164713	BRI3	I3	brain protein I3	protein-coding
125079	chr2	9679851	9679950	+	0	NA	Intergenic	Intergenic	-48903	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
207187	chr7	43621671	43622380	+	0	NA	intron (NM_004760, intron 4 of 6)	MIR|SINE|MIR	38917	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
137189	chr2	191142521	191142800	+	0	NA	intron (NM_003151, intron 3 of 23)	L1MA4A|LINE|L1	8334	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
112805	chr19	7497101	7497680	+	0	NA	promoter-TSS (NM_198534)	promoter-TSS (NM_198534)	-158	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
102982	chr17	76727801	76729400	+	0	NA	intron (NM_001378348, intron 1 of 4)	AluSx1|SINE|Alu	1761	NM_001378353	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
216388	chr8	17925571	17925830	+	0	NA	intron (NR_148032, intron 2 of 38)	AluY|SINE|Alu	2712	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
128981	chr2	64698701	64699230	+	0	NA	Intergenic	Intergenic	-45052	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
151694	chr22	17236701	17238000	+	0	NA	Intergenic	Intergenic	-15502	NM_001282227	51816		NM_017424	ENSG00000093072	ADA2	ADGF|CECR1|IDGFL|PAN|SNEDS|VAIHS	adenosine deaminase 2	protein-coding
111614	chr19	4112251	4112750	+	0	NA	intron (NM_030662, intron 2 of 10)	L2c|LINE|L2	11622	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
20024	chr1	185307971	185308450	+	0	NA	intron (NM_006469, intron 5 of 14)	MER58A|DNA|hAT-Charlie	9033	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
49314	chr12	21607671	21608030	+	0	NA	Intergenic	Intergenic	-3003	NM_021957	2998		NM_021957	ENSG00000111713	GYS2	-	glycogen synthase 2	protein-coding
172853	chr4	3290421	3291130	+	0	NA	Intergenic	Intergenic	-23372	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
185635	chr5	131527721	131528080	+	0	NA	intron (NM_016340, intron 6 of 27)	AluY|SINE|Alu	107329	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
232284	chr9	134441221	134442250	+	0	NA	Intergenic	Intergenic	35175	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
51611	chr12	52875821	52876280	+	0	NA	Intergenic	Intergenic	22934	NR_162090	113218482		NR_162090		MIR9898	-	microRNA 9898	ncRNA
55619	chr12	106986301	106987880	+	0	NA	promoter-TSS (NM_001033050)	promoter-TSS (NM_001033050)	56	NM_001033050	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
237566	chrX	120797251	120797750	+	0	NA	Intergenic	Intergenic	78425	NM_001145718	643311		NM_001145718	ENSG00000236446	CT47B1	CT47.13|CT47A13	cancer/testis antigen family 47 member B1	protein-coding
104517	chr17	81236251	81236630	+	0	NA	intron (NM_144679, intron 4 of 11)	intron (NM_144679, intron 4 of 11)	2615	NM_144679	146705		NM_144679	ENSG00000167302	TEPSIN	C17orf56|ENTHD2	TEPSIN adaptor related protein complex 4 accessory protein	protein-coding
16658	chr1	155172471	155174000	+	0	NA	promoter-TSS (NM_001282378)	promoter-TSS (NM_001282378)	69	NM_173852	200185		NM_173852	ENSG00000163463	KRTCAP2	KCP2	keratinocyte associated protein 2	protein-coding
234519	chrX	19550151	19550250	+	0	NA	intron (NM_001353892, intron 14 of 17)	intron (NM_001353892, intron 14 of 17)	-34939	NM_001001671	389840		NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
67833	chr14	73889171	73890230	+	0	NA	intron (NM_001242924, intron 1 of 13)	MIRc|SINE|MIR	2841	NM_001242927	57862		NM_021188	ENSG00000119725	ZNF410	APA-1|APA1	zinc finger protein 410	protein-coding
118684	chr19	37906401	37907780	+	0	NA	promoter-TSS (NM_001291088)	promoter-TSS (NM_001291088)	-118	NM_015073	23094		NM_015073	ENSG00000105738	SIPA1L3	CTRCT45|SPAL3|SPAR3	signal induced proliferation associated 1 like 3	protein-coding
213939	chr7	142667521	142667600	+	0	NA	3' UTR (NM_001190487, exon 1 of 1)	3' UTR (NM_001190487, exon 1 of 1)	1261	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
47446	chr12	3728051	3729800	+	0	NA	intron (NM_032680, intron 2 of 10)	intron (NM_032680, intron 2 of 10)	24184	NM_032680	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
19676	chr1	180953371	180955100	+	0	NA	intron (NR_145481, intron 1 of 1)	CpG	652	NR_145481	103344928		NR_145481	ENSG00000232586	KIAA1614-AS1	-	KIAA1614 antisense RNA 1	ncRNA
121911	chr19	48411671	48412230	+	0	NA	intron (NM_000836, intron 4 of 13)	FLAM_C|SINE|Alu	18282	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
153120	chr22	23698521	23698980	+	0	NA	intron (NM_001329424, intron 11 of 11)	intron (NM_001329424, intron 11 of 11)	2334	NM_001329425	266747		NM_153615	ENSG00000159496	RGL4	Rgr	ral guanine nucleotide dissociation stimulator like 4	protein-coding
46243	chr11	124722271	124722430	+	0	NA	Intergenic	Intergenic	-17592	NM_006176	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
145881	chr20	45946171	45947980	+	0	NA	exon (NM_022104, exon 15 of 17)	exon (NM_022104, exon 15 of 17)	12392	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
235722	chrX	48912871	48913230	+	0	NA	TTS (NM_006875)	TTS (NM_006875)	-1092	NM_001282648	7355		NM_005660	ENSG00000102100	SLC35A2	CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL	solute carrier family 35 member A2	protein-coding
141463	chr2	241063151	241064550	+	0	NA	intron (NM_001080437, intron 18 of 31)	intron (NM_001080437, intron 18 of 31)	38437	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
156266	chr22	40416801	40417530	+	0	NA	intron (NM_001282661, intron 12 of 13)	intron (NM_001282661, intron 12 of 13)	46275	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
111713	chr19	4324101	4324400	+	0	NA	TTS (NM_001330429)	TTS (NM_001330429)	14577	NM_001013841	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
132087	chr2	101305001	101305850	+	0	NA	intron (NM_173647, intron 1 of 6)	intron (NM_173647, intron 1 of 6)	3276	NM_173647	284996		NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
151793	chr22	18180851	18181230	+	0	NA	intron (NR_136570, intron 11 of 11)	intron (NR_136570, intron 11 of 11)	24869	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
122964	chr19	50783401	50784100	+	0	NA	Intergenic	Intergenic	2410	NM_001384597	105372440		NM_001384597	ENSG00000261341	SMIM47	-	small integral membrane protein 47	protein-coding
202089	chr6	154353071	154353230	+	0	NA	intron (NM_001130700, intron 1 of 11)	intron (NM_001130700, intron 1 of 11)	3616	NM_001130700	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
186036	chr5	134026321	134027430	+	0	NA	Intergenic	MIRb|SINE|MIR	-21900	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
104491	chr17	81149021	81149280	+	0	NA	intron (NM_001080395, intron 1 of 13)	intron (NM_001080395, intron 1 of 13)	-15842	NR_031652	100302229		NR_031652	ENSG00000221025	MIR1250	MIRN1250|hsa-mir-1250|mir-1250	microRNA 1250	ncRNA
37424	chr11	17333671	17334300	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-17815	NM_001202439	374383		NM_001009913	ENSG00000188211	NCR3LG1	B7-H6|B7H6|DKFZp686O24166	natural killer cell cytotoxicity receptor 3 ligand 1	protein-coding
60735	chr13	44352351	44353400	+	0	NA	Intergenic	Intergenic	-20775	NM_001346980	387923		NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
94631	chr17	30021721	30022000	+	0	NA	intron (NR_026738, intron 7 of 15)	intron (NR_026738, intron 7 of 15)	80226	NM_198529	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
77214	chr15	80992301	80992500	+	0	NA	Intergenic	Intergenic	-2581	NR_126328	23184		NM_015154	ENSG00000117899	MESD	BOCA|MESDC2|OI20	mesoderm development LRP chaperone	protein-coding
225972	chr9	41189201	41190400	+	0	NA	promoter-TSS (NM_001085457)	promoter-TSS (NM_001085457)	-399	NM_001286836	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
24924	chr10	1086871	1087030	+	0	NA	intron (NM_014023, intron 7 of 13)	intron (NM_014023, intron 7 of 13)	-30246	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
66163	chr14	60514771	60515580	+	0	NA	Intergenic	CpG	6029	NM_007374	4990		NM_007374	ENSG00000184302	SIX6	MCOPCT2|ODRMD|OPTX2|Six9	SIX homeobox 6	protein-coding
115708	chr19	16213401	16213600	+	0	NA	intron (NM_001130524, intron 6 of 12)	AluSz|SINE|Alu	15589	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
113032	chr19	7940501	7940700	+	0	NA	intron (NM_006351, intron 2 of 12)	intron (NM_006351, intron 2 of 12)	3066	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
112661	chr19	6889701	6891430	+	0	NA	intron (NM_001974, intron 2 of 20)	intron (NM_001974, intron 2 of 20)	2986	NM_001256253	2015		NM_001974	ENSG00000174837	ADGRE1	EMR1|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding
232330	chr9	135283851	135283950	+	0	NA	Intergenic	Intergenic	-59349	NM_173520	157927		NM_173520	ENSG00000178243	LINC02907	C9orf62	long intergenic non-protein coding RNA 2907	ncRNA
118783	chr19	38397171	38397430	+	0	NA	non-coding (NR_073032, exon 6 of 6)	non-coding (NR_073032, exon 6 of 6)	-5835	NM_174905	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
80352	chr16	2507201	2507700	+	0	NA	Intergenic	Intergenic	-6276	NM_001198569	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
171828	chr4	677771	678700	+	0	NA	intron (NM_002477, intron 1 of 6)	(GTGTGT)n|Simple_repeat|Simple_repeat	313	NM_002477	4636		NM_002477	ENSG00000215375	MYL5	MYLC2	myosin light chain 5	protein-coding
6976	chr1	31790521	31790930	+	0	NA	exon (NM_001281988, exon 15 of 15)	exon (NM_001281988, exon 15 of 15)	25326	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
144294	chr20	34707721	34708000	+	0	NA	intron (NM_001329429, intron 2 of 4)	AluSx1|SINE|Alu	3141	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
238261	chrX	148298501	148298900	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-201917	NM_001169124	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
104760	chr17	81694901	81695230	+	0	NA	exon (NM_004712, exon 13 of 22)	exon (NM_004712, exon 13 of 22)	1308	NR_106844	102465471		NR_106844	ENSG00000277784	MIR6786	hsa-mir-6786	microRNA 6786	ncRNA
17192	chr1	156242771	156243380	+	0	NA	TTS (NM_198406)	TTS (NM_198406)	891	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
180668	chr5	18742701	18743600	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	935876	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
138552	chr2	207554671	207555030	+	0	NA	intron (NR_163946, intron 1 of 8)	intron (NR_163946, intron 1 of 8)	-4272	NM_001371428	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123352	chr19	53877001	53877980	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-4707	NM_001316329	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
130206	chr2	84539701	84540100	+	0	NA	intron (NM_001370, intron 4 of 76)	intron (NM_001370, intron 4 of 76)	23402	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
190490	chr5	180349921	180350380	+	0	NA	intron (NM_005110, intron 1 of 18)	intron (NM_005110, intron 1 of 18)	3186	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
228003	chr9	95515501	95516410	+	0	NA	intron (NM_001083603, intron 1 of 23)	CpG	1016	NM_001083603	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
192516	chr6	25024221	25024480	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	17938	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
28238	chr10	45464971	45465430	+	0	NA	intron (NM_001282866, intron 3 of 7)	intron (NM_001282866, intron 3 of 7)	-12079	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
184844	chr5	111511671	111513140	+	0	NA	non-coding (NR_131754, exon 1 of 5)	non-coding (NR_131754, exon 1 of 5)	130	NM_139164	134429		NM_139164	ENSG00000164211	STARD4	-	StAR related lipid transfer domain containing 4	protein-coding
186905	chr5	139580721	139580980	+	0	NA	intron (NM_181838, intron 2 of 7)	AluJr|SINE|Alu	19511	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
29164	chr10	68726821	68727750	+	0	NA	intron (NM_018237, intron 2 of 24)	AluSz6|SINE|Alu	6046	NR_104262	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
141870	chr20	673021	673530	+	0	NA	intron (NM_033129, intron 1 of 1)	intron (NM_033129, intron 1 of 1)	2527	NM_033129	85508		NM_033129	ENSG00000215397	SCRT2	ZNF898B	scratch family transcriptional repressor 2	protein-coding
168109	chr3	138607471	138607800	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1136	NM_001033032	55179		NM_018147	ENSG00000158234	FAIM	FAIM1	Fas apoptotic inhibitory molecule	protein-coding
24101	chr1	235424251	235424350	+	0	NA	intron (NM_001287801, intron 5 of 17).2	intron (NM_001287801, intron 5 of 17).2	56873	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
225088	chr9	33374801	33375600	+	0	NA	Intergenic	Intergenic	27368	NR_164778	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
41551	chr11	66309821	66310380	+	0	NA	Intergenic	Intergenic	6944	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
45559	chr11	118786101	118786400	+	0	NA	exon (NM_001257191, exon 2 of 14)	exon (NM_001257191, exon 2 of 14)	4698	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
237178	chrX	107706701	107706900	+	0	NA	Intergenic	AluSx|SINE|Alu	9708	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
141345	chr2	240594901	240595100	+	0	NA	intron (NM_023085, intron 6 of 9)	intron (NM_023085, intron 6 of 9)	8266	NM_023085	11132		NM_021251	ENSG00000142330	CAPN10	CANP10|NIDDM1	calpain 10	protein-coding
231550	chr9	131479421	131479680	+	0	NA	intron (NM_013318, intron 19 of 31)	intron (NM_013318, intron 19 of 31)	-6115	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
105126	chr17	82223301	82223500	+	0	NA	Intergenic	AluSq|SINE|Alu	-5006	NM_001042422	9123		NM_004207	ENSG00000141526	SLC16A3	MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4	solute carrier family 16 member 3	protein-coding
206241	chr7	29189721	29190280	+	0	NA	promoter-TSS (NM_001371262)	promoter-TSS (NM_001371262)	57	NM_001371262	54504		NM_019029	ENSG00000106066	CPVL	HVLP	carboxypeptidase vitellogenic like	protein-coding
86918	chr16	68079501	68080450	+	0	NA	TTS (NM_001271762)	TTS (NM_001271762)	-5395	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
192831	chr6	27131051	27132200	+	0	NA	TTS (NM_021058)	TTS (NM_021058)	1170	NM_021058	8970		NM_021058	ENSG00000124635	H2BC11	H2B/r|H2BFR|H2BJ|HIST1H2BJ	H2B clustered histone 11	protein-coding
217449	chr8	28624251	28624580	+	0	NA	Intergenic	AluJb|SINE|Alu	77049	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
116379	chr19	17941601	17941800	+	0	NA	intron (NM_138442, intron 2 of 4)	intron (NM_138442, intron 2 of 4)	6604	NM_138442	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
205620	chr7	22481601	22481800	+	0	NA	intron (NM_001164460, intron 4 of 4)	intron (NM_001164460, intron 4 of 4)	18488	NM_001382447	256227		NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
113317	chr19	8583501	8583900	+	0	NA	intron (NM_030957, intron 25 of 25)	AluJb|SINE|Alu	-6258	NM_012335	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
153397	chr22	24758171	24758400	+	0	NA	intron (NR_045649, intron 4 of 21)	intron (NR_045649, intron 4 of 21)	-6216	NR_001283	7152		NR_001283		TOP1P2	-	DNA topoisomerase I pseudogene 2	pseudo
130153	chr2	75064851	75065180	+	0	NA	intron (NM_001058, intron 2 of 4)	intron (NM_001058, intron 2 of 4)	-25797	NR_049796	100846995		NR_049796	ENSG00000263909	MIR5000	-	microRNA 5000	ncRNA
224613	chr9	20496251	20496700	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	5867	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
24808	chr10	137101	138350	+	0	NA	intron (NM_001370102, intron 1 of 14)	intron (NM_001370102, intron 1 of 14)	1916	NM_001370102	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
186655	chr5	138571701	138572600	+	0	NA	intron (NM_004134, intron 3 of 16)	AluJb|SINE|Alu	3251	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
160581	chr3	30810751	30810850	+	0	NA	intron (NM_207359, intron 11 of 14)	intron (NM_207359, intron 11 of 14)	83861	NM_207359	339896		NM_207359	ENSG00000144644	GADL1	ADC|CSADC|HuADC|HuCSADC	glutamate decarboxylase like 1	protein-coding
58677	chr12	132540921	132541800	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	35954	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
103886	chr17	79792371	79793430	+	0	NA	3' UTR (NM_020649, exon 5 of 5)	3' UTR (NM_020649, exon 5 of 5)	4177	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
28989	chr10	63266471	63267000	+	0	NA	intron (NM_001322258, intron 2 of 24)	intron (NM_001322258, intron 2 of 24)	2488	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
147374	chr20	58416701	58417400	+	0	NA	intron (NM_001195677, intron 1 of 2)	intron (NM_001195677, intron 1 of 2)	27821	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
219647	chr8	80364201	80364600	+	0	NA	Intergenic	Intergenic	-121193	NM_001277145	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
87399	chr16	70525721	70526730	+	0	NA	intron (NM_012426, intron 1 of 25)	AluSg|SINE|Alu	2409	NM_012426	23450		NM_012426	ENSG00000189091	SF3B3	RSE1|SAP130|SF3b130|STAF130	splicing factor 3b subunit 3	protein-coding
10159	chr1	61053721	61055080	+	0	NA	Intergenic	Intergenic	-22827	NM_001145511	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
151871	chr22	18710021	18710900	+	0	NA	Intergenic	L1M4|LINE|L1	-23475	NR_165635	642643		NR_136561	ENSG00000182824	FAM230E	LINC01662	family with sequence similarity 230 member E	ncRNA
99853	chr17	55526401	55526700	+	0	NA	Intergenic	MIR|SINE|MIR	-104715	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
190761	chr6	474521	475450	+	0	NA	Intergenic	Intergenic	83233	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
97710	chr17	44343621	44344030	+	0	NA	Intergenic	(CTCCCAT)n|Simple_repeat|Simple_repeat	-1477	NM_002087	2896		NM_002087	ENSG00000030582	GRN	CLN11|GEP|GP88|PCDGF|PEPI|PGRN	granulin precursor	protein-coding
52279	chr12	54561551	54561850	+	0	NA	intron (NM_001315534, intron 1 of 14)	intron (NM_001315534, intron 1 of 14)	235	NM_001315534	5153		NM_000924	ENSG00000123360	PDE1B	HEL-S-79p|PDE1B1|PDES1B	phosphodiesterase 1B	protein-coding
102078	chr17	74956701	74957100	+	0	NA	intron (NM_030630, intron 12 of 18)	intron (NM_030630, intron 12 of 18)	-13789	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
81432	chr16	8858001	8858730	+	0	NA	exon (NM_014316, exon 3 of 4)	exon (NM_014316, exon 3 of 4)	3445	NM_001278265	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
25820	chr10	11202271	11203350	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	37780	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
181173	chr5	39063001	39063550	+	0	NA	intron (NM_001285439, intron 2 of 38)	intron (NM_001285439, intron 2 of 38)	11124	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
207355	chr7	44079951	44080050	+	0	NA	intron (NR_156112, intron 2 of 10)	intron (NR_156112, intron 2 of 10)	2530	NM_001284330	27434		NM_013284	ENSG00000122678	POLM	Pol Mu|Tdt-N	DNA polymerase mu	protein-coding
202910	chr6	160068051	160068580	+	0	NA	exon (NM_000876, exon 30 of 48)	exon (NM_000876, exon 30 of 48)	-24767	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
185056	chr5	115977151	115977530	+	0	NA	intron (NM_173800, intron 1 of 19)	L1ME1|LINE|L1	14865	NM_173800	206338		NM_173800	ENSG00000172901	LVRN	APQ|AQPEP|TAQPEP	laeverin	protein-coding
226416	chr9	70485371	70485600	+	0	NA	Intergenic	Intergenic	-70828	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
82921	chr16	21818071	21818380	+	0	NA	intron (NR_003370, intron 2 of 11).2	AluSx3|SINE|Alu	949	NR_003370	730092		NR_003370		RRN3P1	-	RRN3 pseudogene 1	pseudo
134662	chr2	144462281	144463180	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-56884	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
215892	chr8	8058021	8058280	+	0	NA	Intergenic	Intergenic	30939	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
189148	chr5	171355051	171355780	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-10703	NR_145720	109616973		NR_145720	ENSG00000206909	SNORA70J	-	small nucleolar RNA, H/ACA box 70J	snoRNA
58368	chr12	131710451	131711800	+	0	NA	promoter-TSS (NM_004592)	promoter-TSS (NM_004592)	35	NM_001261411	6433		NM_004592	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor SWAP	protein-coding
91485	chr17	4896401	4897280	+	0	NA	TTS (NM_000080)	TTS (NM_000080)	-2696	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
69321	chr14	93208021	93208750	+	0	NA	intron (NR_038150, intron 1 of 9)	intron (NR_038150, intron 1 of 9)	1129	NM_175748	55148		NM_175748	ENSG00000012963	UBR7	C14orf130|LICAS	ubiquitin protein ligase E3 component n-recognin 7	protein-coding
73084	chr15	40933101	40933300	+	0	NA	intron (NM_019074, intron 6 of 10)	intron (NM_019074, intron 6 of 10)	3860	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
121209	chr19	46610271	46610430	+	0	NA	3' UTR (NM_001329922, exon 6 of 6)	3' UTR (NM_001329922, exon 6 of 6)	8278	NM_001329922	808		NM_005184	ENSG00000160014	CALM3	CALM|CAM1|CAM2|CAMB|CPVT6|CaM|CaMIII|HEL-S-72|LQT16|PHKD|PHKD3	calmodulin 3	protein-coding
81254	chr16	4613001	4613230	+	0	NA	intron (NM_001330467, intron 1 of 2)	intron (NM_001330467, intron 1 of 2)	1773	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
36930	chr11	10846621	10846880	+	0	NA	Intergenic	Intergenic	11303	NM_021211	58486		NM_021211	ENSG00000236287	ZBED5	Buster1	zinc finger BED-type containing 5	protein-coding
1473	chr1	2691301	2691500	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-58384	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
224714	chr9	21465821	21466180	+	0	NA	intron (NR_152878, intron 2 of 2)	AluJb|SINE|Alu	16313	NM_176891	338376		NM_176891	ENSG00000184995	IFNE	IFN-E|IFNE1|IFNT1|INFE1|PRO655	interferon epsilon	protein-coding
60008	chr13	32520471	32520830	+	0	NA	intron (NM_001320836, intron 5 of 9)	AluY|SINE|Alu	-11255	NR_026928	116828		NR_026928	ENSG00000281026	N4BP2L2-IT2	CG030	N4BPL2 intronic transcript 2	ncRNA
59533	chr13	27254201	27254980	+	0	NA	promoter-TSS (NR_002574)	promoter-TSS (NR_002574)	-474	NR_002574	26771		NR_002574	ENSG00000207500	SNORD102	RNU102|Z18	small nucleolar RNA, C/D box 102	snoRNA
213287	chr7	134954151	134954550	+	0	NA	intron (NM_033140, intron 6 of 11)	intron (NM_033140, intron 6 of 11)	-32158	NM_001367817	340351		NM_178563	ENSG00000146856	AGBL3	CCP3	AGBL carboxypeptidase 3	protein-coding
61706	chr13	74088671	74088830	+	0	NA	intron (NM_007249, intron 1 of 7)	MIRc|SINE|MIR	45179	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
146429	chr20	49608771	49609780	+	0	NA	Intergenic	L2c|LINE|L2	-41138	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
102934	chr17	76623851	76624550	+	0	NA	TTS (NM_001289107)	TTS (NM_001289107)	19557	NM_018414	55808		NM_018414	ENSG00000070526	ST6GALNAC1	HSY11339|SIAT7A|ST6GalNAcI|STYI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding
18221	chr1	161020101	161021700	+	0	NA	intron (NM_001382733, intron 1 of 9)	intron (NM_001382733, intron 1 of 9)	252	NM_001348091	50848		NM_016946	ENSG00000158769	F11R	CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1	F11 receptor	protein-coding
174183	chr4	36321701	36321900	+	0	NA	intron (NR_165630, intron 9 of 10)	L2a|LINE|L2	40184	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
171235	chr3	195782121	195782450	+	0	NA	exon (NM_001322468, exon 10 of 42)	exon (NM_001322468, exon 10 of 42)	29644	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
232232	chr9	134380771	134381100	+	0	NA	intron (NM_001291920, intron 1 of 9)	intron (NM_001291920, intron 1 of 9)	1524	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
124730	chr2	5626671	5626850	+	0	NA	Intergenic	MIRc|SINE|MIR	64358	NR_110580	102723818		NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
65920	chr14	55327101	55327750	+	0	NA	intron (NM_152231, intron 1 of 1)	L2a|LINE|L2	55271	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
38662	chr11	46385851	46386500	+	0	NA	exon (NM_000741, exon 2 of 2)	exon (NM_000741, exon 2 of 2)	4464	NM_001012333	4192		NM_002391	ENSG00000110492	MDK	ARAP|MK|NEGF2	midkine	protein-coding
118632	chr19	37271021	37271280	+	0	NA	Intergenic	SST1|Satellite|centr	-2140	NR_029390	284412		NR_029390		LOC284412	-	Putative uncharacterized protein PP6455	ncRNA
175976	chr4	81491771	81492830	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-20393	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
117424	chr19	19637451	19638450	+	0	NA	exon (NM_001288999, exon 10 of 20)	exon (NM_001288999, exon 10 of 20)	5707	NM_001288998	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
162800	chr3	49105951	49106680	+	0	NA	Intergenic	Intergenic	-1558	NM_001272073	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
193157	chr6	29649221	29650480	+	0	NA	Intergenic	Intergenic	-7242	NM_206814	4340		NM_002433	ENSG00000204655	MOG	BTN6|BTNL11|MOGIG2|NRCLP7	myelin oligodendrocyte glycoprotein	protein-coding
123250	chr19	53254301	53255130	+	0	NA	non-coding (NR_169728, exon 1 of 6)	non-coding (NR_169728, exon 1 of 6)	108	NM_001385612	342926		NM_182609	ENSG00000197928	ZNF677	-	zinc finger protein 677	protein-coding
44811	chr11	113862001	113862800	+	0	NA	intron (NM_020886, intron 1 of 24)	L2|LINE|L2	13172	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
43661	chr11	85740701	85741130	+	0	NA	intron (NM_032943, intron 4 of 18)	intron (NM_032943, intron 4 of 18)	17154	NM_001162951	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
239258	chrY	13432401	13432880	+	0	NA	intron (NM_001258265, intron 2 of 23)	L1M2|LINE|L1	-46537	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
55657	chr12	107331021	107331480	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	10662	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
64908	chr14	35403261	35404300	+	0	NA	exon (NM_020529, exon 2 of 6)	exon (NM_020529, exon 2 of 6)	969	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
40530	chr11	64296771	64297200	+	0	NA	exon (NM_001317090, exon 3 of 7)	exon (NM_001317090, exon 3 of 7)	-3373	NM_001039496	25858		NM_001039496	ENSG00000219435	CATSPERZ	C11orf20|TEX40	catsper channel auxiliary subunit zeta	protein-coding
116073	chr19	17237121	17237900	+	0	NA	intron (NM_005234, intron 2 of 3)	AluSc5|SINE|Alu	7832	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
68889	chr14	91334001	91334200	+	0	NA	intron (NM_001080414, intron 10 of 29)	L1ME2z|LINE|L1	-80220	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
125542	chr2	15176721	15177680	+	0	NA	intron (NR_052013, intron 50 of 50)	intron (NR_052013, intron 50 of 50)	384134	NM_015909	51594		NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	NBAS subunit of NRZ tethering complex	protein-coding
209771	chr7	87226671	87227030	+	0	NA	Intergenic	Intergenic	-6263	NM_001329473	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
136021	chr2	172442101	172442680	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	14804	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
4959	chr1	23993671	23993930	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-13473	NM_001191005	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
84447	chr16	30417271	30419230	+	0	NA	exon (NM_001142305, exon 3 of 3)	exon (NM_001142305, exon 3 of 3)	1509	NR_145731	109616959		NR_145731	ENSG00000199787	SNORA80C	-	small nucleolar RNA, H/ACA box 80C	snoRNA
103507	chr17	78426401	78426600	+	0	NA	exon (NM_173628, exon 79 of 81)	exon (NM_173628, exon 79 of 81)	47851	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
228309	chr9	98122651	98122750	+	0	NA	3' UTR (NM_003389, exon 12 of 12)	3' UTR (NM_003389, exon 12 of 12)	-3478	NM_033219	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
233509	chr9	138280821	138281150	+	0	NA	Intergenic	Intergenic	64129	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
113084	chr19	8263221	8263930	+	0	NA	Intergenic	Intergenic	44783	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
90584	chr17	1564051	1564150	+	0	NA	Intergenic	L2c|LINE|L2	-1308	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
120422	chr19	43950751	43951680	+	0	NA	promoter-TSS (NM_013359)	promoter-TSS (NM_013359)	-8	NM_001297589	7638		NM_013359	ENSG00000159905	ZNF221	-	zinc finger protein 221	protein-coding
48579	chr12	10296521	10297180	+	0	NA	intron (NM_001351060, intron 2 of 8)	intron (NM_001351060, intron 2 of 8)	-7596	NM_001114396	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
39048	chr11	47888121	47888380	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-39706	NM_015231	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
44118	chr11	96034201	96034430	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-110208	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
58924	chr13	19755351	19755650	+	0	NA	intron (NM_001354909, intron 3 of 8)	AluSq|SINE|Alu	27445	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
71397	chr14	105523551	105524050	+	0	NA	Intergenic	L1MD2|LINE|L1	-2783	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
177885	chr4	128818471	128818630	+	0	NA	intron (NM_001287443, intron 1 of 10)	intron (NM_001287443, intron 1 of 10)	6706	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
15130	chr1	148692621	148692980	+	0	NA	Intergenic	Intergenic	-13036	NM_001364008	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
9243	chr1	46134171	46134330	+	0	NA	intron (NR_125987, intron 1 of 2)	intron (NR_125987, intron 1 of 2)	879	NR_125987	101929626		NR_125987	ENSG00000227857	LOC101929626	-	uncharacterized LOC101929626	ncRNA
160306	chr3	27476651	27476750	+	0	NA	intron (NR_135544, intron 1 of 24)	MSTA|LTR|ERVL-MaLR	7684	NR_135543	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
75191	chr15	64781151	64781450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5711	NM_194272	348093		NM_194272	ENSG00000166831	RBPMS2	-	RNA binding protein, mRNA processing factor 2	protein-coding
21561	chr1	206382901	206383100	+	0	NA	intron (NM_001377446, intron 4 of 21)	intron (NM_001377446, intron 4 of 21)	-87476	NM_001193321	9641		NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein-coding
211853	chr7	110988301	110988500	+	0	NA	intron (NM_032549, intron 3 of 5)	MLT1J1|LTR|ERVL-MaLR	-102606	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
71199	chr14	105067261	105068180	+	0	NA	Intergenic	Intergenic	-2290	NM_013345	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
25569	chr10	7691271	7691490	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-11936	NM_002216	3698		NM_002216	ENSG00000151655	ITIH2	H2P|ITI-HC2|SHAP	inter-alpha-trypsin inhibitor heavy chain 2	protein-coding
132802	chr2	110384371	110384750	+	0	NA	promoter-TSS (NR_027244)	promoter-TSS (NR_027244)	-24	NR_027244	151009		NM_152518		LINC01106	-	long intergenic non-protein coding RNA 1106	ncRNA
49154	chr12	14950421	14950700	+	0	NA	exon (NM_001321420, exon 3 of 7)	exon (NM_001321420, exon 3 of 7)	546	NM_001321423	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
76970	chr15	78174171	78174700	+	0	NA	exon (NM_015162, exon 12 of 14)	exon (NM_015162, exon 12 of 14)	25073	NM_005530	3419		NM_005530	ENSG00000166411	IDH3A	RP90	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein-coding
141521	chr2	241216271	241216700	+	0	NA	intron (NM_001370694, intron 19 of 24)	intron (NM_001370694, intron 19 of 24)	27808	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
88498	chr16	85238301	85238500	+	0	NA	Intergenic	Intergenic	30604	NR_162142	113219463		NR_162142		MIR12128	-	microRNA 12128	ncRNA
27845	chr10	38919021	38919280	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	222554	NR_045000	399746		NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
34388	chr10	132335371	132336080	+	0	NA	intron (NM_030626, intron 2 of 10)	LTR71B|LTR|ERV1	-1615	NM_001309474	80313		NM_030626	ENSG00000148814	LRRC27	-	leucine rich repeat containing 27	protein-coding
156732	chr22	41804551	41804650	+	0	NA	intron (NM_001382346, intron 2 of 7)	MER65-int|LTR|ERV1	3921	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
89631	chr16	89324401	89325080	+	0	NA	non-coding (NR_168302, exon 4 of 4)	non-coding (NR_168302, exon 4 of 4)	4288	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
91296	chr17	4177771	4178250	+	0	NA	intron (NM_001330063, intron 18 of 24)	intron (NM_001330063, intron 18 of 24)	34313	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
5667	chr1	26317421	26318600	+	0	NA	promoter-TSS (NM_001803)	promoter-TSS (NM_001803)	52	NM_001803	1043		NM_001803	ENSG00000169442	CD52	CDW52|EDDM5|HE5	CD52 molecule	protein-coding
215725	chr8	1759901	1761250	+	0	NA	Intergenic	MIRb|SINE|MIR	2759	NR_134302	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
34512	chr10	132593421	132594400	+	0	NA	intron (NM_005539, intron 1 of 15)	L1M5|LINE|L1	56123	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
69091	chr14	92119901	92120100	+	0	NA	intron (NM_004545, intron 1 of 2)	intron (NM_004545, intron 1 of 2)	1706	NM_004545	4707		NM_004545	ENSG00000183648	NDUFB1	CI-MNLL|CI-SGDH|MNLL	NADH:ubiquinone oxidoreductase subunit B1	protein-coding
221765	chr8	127875901	127876500	+	0	NA	intron (NR_003367, intron 1 of 8)	intron (NR_003367, intron 1 of 8)	72523	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
205402	chr7	16399371	16399530	+	0	NA	intron (NR_160656, intron 2 of 7)	intron (NR_160656, intron 2 of 7)	22088	NM_001101417	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
151520	chr21	46434401	46435230	+	0	NA	intron (NM_006031, intron 38 of 46)	intron (NM_006031, intron 38 of 46)	-24076	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
75898	chr15	69815951	69816250	+	0	NA	Intergenic	Intergenic	-19134	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
25738	chr10	9070701	9070900	+	0	NA	Intergenic	L1PA8|LINE|L1	172811	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
127319	chr2	38875071	38876630	+	0	NA	promoter-TSS (NM_001329963)	promoter-TSS (NM_001329963)	84	NM_198963	90957		NM_144995	ENSG00000163214	DHX57	DDX57	DExH-box helicase 57	protein-coding
88105	chr16	81544351	81544650	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	10598	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
158074	chr22	49965371	49965530	+	0	NA	Intergenic	Intergenic	2584	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
124366	chr19	58358851	58358950	+	0	NA	intron (NM_198458, intron 1 of 2)	intron (NM_198458, intron 1 of 2)	-3726	NR_136527	105372483		NR_136527		ZNF497-AS1	-	ZNF497 antisense RNA 1	ncRNA
223447	chr8	143977801	143978400	+	0	NA	intron (NR_134234, intron 9 of 10)	CpG-27770	-1355	NM_000445	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
194835	chr6	34404801	34405000	+	0	NA	intron (NM_001202470, intron 5 of 8)	AluJo|SINE|Alu	-12231	NM_006703	11165		NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding
92161	chr17	7687201	7687700	+	0	NA	promoter-TSS (NM_001126114)	promoter-TSS (NM_001126114)	21	NM_001143991	55135		NM_018081	ENSG00000141499	WRAP53	DKCB3|TCAB1|WDR79	WD repeat containing antisense to TP53	protein-coding
63589	chr14	20475601	20475800	+	0	NA	intron (NM_000270, intron 5 of 5)	AluSx|SINE|Alu	6294	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
183342	chr5	76762051	76762350	+	0	NA	Intergenic	AluJb|SINE|Alu	46074	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
55912	chr12	109736301	109737280	+	0	NA	intron (NR_026662, intron 1 of 2)	intron (NR_026662, intron 1 of 2)	22965	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
13963	chr1	120403621	120404050	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	-11192	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
212828	chr7	130440401	130441680	+	0	NA	promoter-TSS (NM_001257158)	promoter-TSS (NM_001257158)	-24	NM_001257160	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
197133	chr6	57941221	57941550	+	0	NA	intron (NR_132998, intron 2 of 5)	AluY|SINE|Alu	-4456	NR_133000	375513		NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L	GUSB pseudogene 4	pseudo
21292	chr1	204452821	204453680	+	0	NA	intron (NM_001377335, intron 14 of 35)	intron (NM_001377335, intron 14 of 35)	-41433	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
178503	chr4	150660521	150660980	+	0	NA	intron (NM_001367550, intron 37 of 56)	SVA_F|Retroposon|SVA	78599	NM_006439	10586		NM_006439	ENSG00000181541	MAB21L2	MCOPS14|MCSKS14	mab-21 like 2	protein-coding
16484	chr1	154746871	154747230	+	0	NA	intron (NM_001204087, intron 3 of 8)	intron (NM_001204087, intron 3 of 8)	112826	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
175588	chr4	75668571	75668730	+	0	NA	intron (NM_203505, intron 1 of 11)	intron (NM_203505, intron 1 of 11)	4509	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
164948	chr3	71245901	71246100	+	0	NA	promoter-TSS (NM_001244814)	promoter-TSS (NM_001244814)	-923	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
80112	chr16	2028621	2029330	+	0	NA	intron (NM_001130012, intron 1 of 6)	intron (NM_001130012, intron 1 of 6)	2073	NM_001130012	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
118555	chr19	36136521	36137250	+	0	NA	Intergenic	L2c|LINE|L2	-3181	NM_001003962	826		NM_001749	ENSG00000126247	CAPNS1	CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1|PPH6	calpain small subunit 1	protein-coding
83007	chr16	22198451	22198750	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7678	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
43879	chr11	88339921	88340400	+	0	NA	Intergenic	LTR8|LTR|ERV1	-2424	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
1580	chr1	3594151	3594450	+	0	NA	intron (NM_001409, intron 3 of 36)	AluJo|SINE|Alu	17208	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
92868	chr17	16398601	16398900	+	0	NA	Intergenic	Intergenic	-16821	NM_016113	51393		NM_016113	ENSG00000187688	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel subfamily V member 2	protein-coding
217476	chr8	28881821	28882080	+	0	NA	intron (NM_001363038, intron 1 of 16)	SVA_E|Retroposon|SVA	7965	NM_001172562	55756		NM_018250	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
116346	chr19	17861921	17862450	+	0	NA	promoter-TSS (NR_000012)	promoter-TSS (NR_000012)	-403	NR_000012	26780		NR_000012	ENSG00000207166	SNORA68	RNU68|SNORA68A|U68	small nucleolar RNA, H/ACA box 68	snoRNA
20743	chr1	200973171	200973330	+	0	NA	3' UTR (NM_001252103, exon 34 of 34)	3' UTR (NM_001252103, exon 34 of 34)	44306	NR_147176	647215		NR_147176	ENSG00000293444	MROH3P	C1orf81	maestro heat like repeat family member 3, pseudogene	pseudo
125797	chr2	23942201	23942800	+	0	NA	intron (NM_181713, intron 1 of 6)	AluSx|SINE|Alu	2037	NM_181713	165324		NM_181713	ENSG00000173960	UBXN2A	UBXD4	UBX domain protein 2A	protein-coding
17074	chr1	156119451	156120500	+	0	NA	intron (NM_170707, intron 1 of 11)	intron (NM_170707, intron 1 of 11)	5264	NM_005572	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
133035	chr2	112054101	112056880	+	0	NA	5' UTR (NM_032824, exon 1 of 19)	5' UTR (NM_032824, exon 1 of 19)	221	NM_001329914	84910		NM_032824	ENSG00000153214	TMEM87B	-	transmembrane protein 87B	protein-coding
57469	chr12	122026751	122026850	+	0	NA	intron (NM_020993, intron 1 of 5)	intron (NM_020993, intron 1 of 5)	4916	NM_001024808	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
87029	chr16	68271371	68271930	+	0	NA	intron (NM_003983, intron 2 of 10)	intron (NM_003983, intron 2 of 10)	7124	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
122184	chr19	48924421	48924680	+	0	NA	Intergenic	AluJo|SINE|Alu	-5659	NR_046633	100874085		NR_046633	ENSG00000235191	NUCB1-AS1	-	NUCB1 antisense RNA 1	ncRNA
2051	chr1	7829221	7829680	+	0	NA	intron (NM_001289863, intron 18 of 22)	Tigger7|DNA|TcMar-Tigger	23615	NM_006786	10911		NM_006786	ENSG00000049247	UTS2	PRO1068|U-II|UCN2|UII	urotensin 2	protein-coding
237062	chrX	103483801	103484000	+	0	NA	Intergenic	MIR|SINE|MIR	35589	NM_080879	142684		NM_080879	ENSG00000172476	RAB40A	RAR2|RAR2A	RAB40A, member RAS oncogene family	protein-coding
199486	chr6	118643851	118644350	+	0	NA	intron (NM_001178035, intron 2 of 13)	intron (NM_001178035, intron 2 of 13)	7491	NM_206921	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
77553	chr15	84760771	84760930	+	0	NA	intron (NM_014630, intron 1 of 10)	intron (NM_014630, intron 1 of 10)	12258	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
95947	chr17	38983101	38983600	+	0	NA	Intergenic	Intergenic	-15947	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
81774	chr16	11515771	11516330	+	0	NA	exon (NM_001370704, exon 6 of 67)	exon (NM_001370704, exon 6 of 67)	11197	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
227289	chr9	89403671	89403830	+	0	NA	intron (NM_001371200, intron 5 of 20)	intron (NM_001371200, intron 5 of 20)	76140	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
145155	chr20	38838021	38839080	+	0	NA	intron (NM_001172735, intron 2 of 9)	intron (NM_001172735, intron 2 of 9)	32853	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
15721	chr1	151044571	151045380	+	0	NA	intron (NM_138278, intron 7 of 9)	intron (NM_138278, intron 7 of 9)	-2776	NM_017860	54964		NM_017860	ENSG00000143443	C1orf56	MENT	chromosome 1 open reading frame 56	protein-coding
11729	chr1	91888121	91888380	+	0	NA	intron (NM_001195684, intron 2 of 17)	THE1B|LTR|ERVL-MaLR	-2099	NM_003243	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
71027	chr14	104773501	104774330	+	0	NA	exon (NM_005163, exon 8 of 14)	exon (NM_005163, exon 8 of 14)	19686	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
81615	chr16	10743571	10744950	+	0	NA	intron (NM_001323597, intron 2 of 10)	CpG	391	NM_001323597	4682		NM_002484	ENSG00000103274	NUBP1	CIAO5|NBP|NBP1|NBP35	NUBP iron-sulfur cluster assembly factor 1, cytosolic	protein-coding
161261	chr3	39260951	39261780	+	0	NA	Intergenic	Intergenic	18671	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
61223	chr13	49606951	49607700	+	0	NA	Intergenic	Intergenic	-21182	NM_138450	115761		NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP ribosylation factor like GTPase 11	protein-coding
183193	chr5	75718701	75719080	+	0	NA	intron (NR_149046, intron 1 of 2)	MIRc|SINE|MIR	-1453	NM_001099271	134359		NM_152408	ENSG00000152359	POC5	C5orf37	POC5 centriolar protein	protein-coding
10357	chr1	64937071	64937230	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	29399	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
221839	chr8	128224771	128225200	+	0	NA	Intergenic	L2c|LINE|L2	74869	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
181720	chr5	50677151	50677450	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	9886	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
134916	chr2	151051621	151051900	+	0	NA	Intergenic	Intergenic	210103	NM_198557	375287		NM_198557	ENSG00000184898	RBM43	C2orf38	RNA binding motif protein 43	protein-coding
192337	chr6	24204971	24205130	+	0	NA	exon (NM_016356, exon 8 of 10)	exon (NM_016356, exon 8 of 10)	78835	NM_080723	140767		NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
87197	chr16	69423771	69425230	+	0	NA	promoter-TSS (NM_030579)	promoter-TSS (NM_030579)	-119	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
162214	chr3	47032151	47032450	+	0	NA	intron (NR_146158, intron 19 of 21)	AluJb|SINE|Alu	20758	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
138056	chr2	201525351	201525650	+	0	NA	intron (NM_001168216, intron 11 of 12)	L1PA15|LINE|L1	73760	NM_001206864	55437		NM_018571	ENSG00000082146	STRADB	ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038	STE20 related adaptor beta	protein-coding
175949	chr4	80798151	80798730	+	0	NA	intron (NM_001206997, intron 4 of 6)	ERVL-E-int|LTR|ERVL	-232268	NM_001201	651		NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding
137969	chr2	201187401	201187600	+	0	NA	intron (NM_001230, intron 2 of 7)	MIRc|SINE|MIR	4359	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
164589	chr3	66185301	66185980	+	0	NA	intron (NM_173471, intron 1 of 10)	intron (NM_173471, intron 1 of 10)	-35102	NM_001350993	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
207967	chr7	55254421	55255200	+	0	NA	intron (NR_110426, intron 2 of 3)	CpG	825	NR_110426	102725541		NR_110426		ELDR	Fabl|LINC01156	EGFR long non-coding downstream RNA	ncRNA
23651	chr1	230972401	230973800	+	0	NA	intron (NM_024525, intron 1 of 22)	L4_B_Mam|LINE|RTE-X	5761	NM_001376509	79573		NM_024525	ENSG00000143643	TTC13	-	tetratricopeptide repeat domain 13	protein-coding
210987	chr7	102140771	102141200	+	0	NA	intron (NM_181552, intron 8 of 23)	intron (NM_181552, intron 8 of 23)	-144156	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
113811	chr19	10583751	10584150	+	0	NA	exon (NM_005498, exon 2 of 12)	exon (NM_005498, exon 2 of 12)	3362	NM_005498	10053		NM_005498	ENSG00000129354	AP1M2	AP1-mu2|HSMU1B|MU-1B|MU1B|mu2	adaptor related protein complex 1 subunit mu 2	protein-coding
205174	chr7	7566201	7567530	+	0	NA	promoter-TSS (NM_001370077)	promoter-TSS (NM_001370077)	-19	NM_001370080	54468		NM_019005	ENSG00000164654	MIOS	MIO|Sea4|Yulink	meiosis regulator for oocyte development	protein-coding
153891	chr22	30292821	30293200	+	0	NA	intron (NM_031937, intron 8 of 8)	intron (NM_031937, intron 8 of 8)	-3505	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
128161	chr2	48529621	48530880	+	0	NA	promoter-TSS (NM_006873)	promoter-TSS (NM_006873)	81	NM_001198595	11037		NM_006873	ENSG00000243244	STON1	SALF|SBLF|STN1|STNB1	stonin 1	protein-coding
120600	chr19	45022021	45022530	+	0	NA	intron (NM_006509, intron 4 of 10)	intron (NM_006509, intron 4 of 10)	-16770	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
102162	chr17	75128901	75129100	+	0	NA	exon (NM_024585, exon 3 of 3)	exon (NM_024585, exon 3 of 3)	2742	NR_045513	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
194769	chr6	34072701	34073300	+	0	NA	intron (NM_001282847, intron 2 of 9)	(CA)n|Simple_repeat|Simple_repeat	32967	NM_001256813	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
113536	chr19	10145151	10145250	+	0	NA	intron (NM_001318730, intron 27 of 39)	intron (NM_001318730, intron 27 of 39)	-25301	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
46012	chr11	121604171	121604330	+	0	NA	exon (NM_003105, exon 33 of 48)	exon (NM_003105, exon 33 of 48)	-122461	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
220106	chr8	94487451	94487590	+	0	NA	TTS (NM_015496)	TTS (NM_015496)	-12405	NM_012415	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
197716	chr6	86490151	86490250	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-447328	NM_000865	3354		NM_000865	ENSG00000168830	HTR1E	5-HT1E	5-hydroxytryptamine receptor 1E	protein-coding
206823	chr7	37255501	37255700	+	0	NA	intron (NM_014800, intron 6 of 21)	intron (NM_014800, intron 6 of 21)	98068	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
172630	chr4	2530601	2530800	+	0	NA	Intergenic	AluYk3|SINE|Alu	-4675	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
52759	chr12	56660971	56661130	+	0	NA	Intergenic	MER8|DNA|TcMar-Tigger	-15066	NM_001686	506		NM_001686	ENSG00000110955	ATP5F1B	ATP5B|ATPMB|ATPSB|HEL-S-271|HUMOP2	ATP synthase F1 subunit beta	protein-coding
159228	chr3	12908201	12908400	+	0	NA	intron (NM_014869, intron 12 of 13)	CpG	-23089	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
31852	chr10	99838901	99839500	+	0	NA	intron (NM_000392, intron 25 of 31)	SVA_F|Retroposon|SVA	56560	NM_000392	1244		NM_000392	ENSG00000023839	ABCC2	ABC30|CMOAT|DJS|MRP2|cMRP	ATP binding cassette subfamily C member 2	protein-coding
15883	chr1	151508771	151509650	+	0	NA	Intergenic	Intergenic	-2177	NM_020770	57530		NM_020770	ENSG00000143375	CGN	-	cingulin	protein-coding
151377	chr21	45891771	45892900	+	0	NA	intron (NM_001382276, intron 6 of 18)	intron (NM_001382276, intron 6 of 18)	44185	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
164660	chr3	66856551	66856850	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-118364	NR_135533	105377143		NR_135533		LOC105377143	-	uncharacterized LOC105377143	ncRNA
127013	chr2	36925901	36926380	+	0	NA	intron (NM_003162, intron 1 of 17)	intron (NM_003162, intron 1 of 17)	40396	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
158938	chr3	10143851	10143950	+	0	NA	intron (NM_001354723, intron 2 of 2)	L2b|LINE|L2	2122	NM_198156	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
54682	chr12	93406051	93406450	+	0	NA	3' UTR (NM_199040, exon 5 of 5)	3' UTR (NM_199040, exon 5 of 5)	27672	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
124398	chr19	58402921	58403180	+	0	NA	Intergenic	L1MC2|LINE|L1	2847	NR_149054	110806301		NR_149054	ENSG00000268307	LINC02560	-	long intergenic non-protein coding RNA 2560	ncRNA
186532	chr5	138440551	138441150	+	0	NA	intron (NM_016606, intron 1 of 7)	intron (NM_016606, intron 1 of 7)	1793	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
143890	chr20	32575601	32575800	+	0	NA	intron (NM_001256798, intron 1 of 10)	L2a|LINE|L2	9633	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
120950	chr19	45694551	45694850	+	0	NA	intron (NM_001163377, intron 2 of 5)	AluSx3|SINE|Alu	2034	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
67945	chr14	74786551	74787050	+	0	NA	intron (NM_019589, intron 4 of 20)	L1ME3A|LINE|L1	23484	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
6105	chr1	27331201	27331400	+	0	NA	intron (NR_037576, intron 3 of 6)	intron (NR_037576, intron 3 of 6)	7426	NR_033926	644961		NR_033926		ACTG1P20	-	actin gamma 1 pseudogene 20	pseudo
60173	chr13	40206201	40207280	+	0	NA	intron (NR_033877, intron 2 of 5)	intron (NR_033877, intron 2 of 5)	13762	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
191159	chr6	4790201	4790680	+	0	NA	intron (NM_001368127, intron 1 of 5)	intron (NM_001368127, intron 1 of 5)	14036	NM_001368126	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
235022	chrX	40011451	40011750	+	0	NA	Intergenic	Intergenic	86358	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
169462	chr3	168094721	168095300	+	0	NA	intron (NM_001308155, intron 1 of 14)	intron (NM_001308155, intron 1 of 14)	914	NM_001308155	27333		NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
132619	chr2	108614451	108614750	+	0	NA	intron (NM_001193482, intron 1 of 9)	intron (NM_001193482, intron 1 of 9)	-6651	NM_001193484	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
48090	chr12	7251551	7251650	+	0	NA	Intergenic	L1PA2|LINE|L1	-52732	NM_001080454	341392		NM_001080454	ENSG00000215009	ACSM4	-	acyl-CoA synthetase medium chain family member 4	protein-coding
202617	chr6	158739601	158740280	+	0	NA	intron (NM_001318745, intron 8 of 14)	L1MEg|LINE|L1	24813	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
19606	chr1	179851251	179851350	+	0	NA	exon (NM_001349934, exon 5 of 7)	exon (NM_001349934, exon 5 of 7)	17540	NM_001349933	163590		NM_022347	ENSG00000169905	TOR1AIP2	IFRG15|LULL1|NET9	torsin 1A interacting protein 2	protein-coding
159110	chr3	12582101	12582300	+	0	NA	exon (NM_001271707, exon 7 of 7)	exon (NM_001271707, exon 7 of 7)	-21201	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
119190	chr19	39430561	39431750	+	0	NA	Intergenic	Intergenic	4794	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
64162	chr14	22915901	22916430	+	0	NA	intron (NM_001352764, intron 1 of 14)	AluJr|SINE|Alu	2984	NM_001352765	55147		NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding
218219	chr8	42032571	42033380	+	0	NA	intron (NM_001305878, intron 2 of 13)	AluSx1|SINE|Alu	-18775	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
219696	chr8	80872321	80872930	+	0	NA	intron (NM_001033723, intron 1 of 8)	intron (NM_001033723, intron 1 of 8)	1843	NM_001367783	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
226541	chr9	72347971	72349280	+	0	NA	Intergenic	AluSp|SINE|Alu	15931	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
84051	chr16	29578021	29578280	+	0	NA	intron (NR_135305, intron 1 of 13)	AluY|SINE|Alu	16942	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
26894	chr10	26437711	26439200	+	0	NA	5' UTR (NM_019043, exon 1 of 15)	5' UTR (NM_019043, exon 1 of 15)	114	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
48065	chr12	7110521	7110780	+	0	NA	intron (NR_026947, intron 4 of 11)	MER81|DNA|hAT-Blackjack	-1436	NM_001297640	51279		NM_016546	ENSG00000139178	C1RL	C1RL1|C1RLP|C1r-LP|CLSPa	complement C1r subcomponent like	protein-coding
164355	chr3	58074651	58075330	+	0	NA	intron (NM_001164319, intron 1 of 44)	intron (NM_001164319, intron 1 of 44)	66568	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
63247	chr13	113940671	113941230	+	0	NA	Intergenic	Intergenic	-11959	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
153346	chr22	24418151	24418930	+	0	NA	TTS (NM_001254733)	TTS (NM_001254733)	-5057	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
149111	chr21	17585751	17586100	+	0	NA	intron (NM_001207066, intron 7 of 7)	intron (NM_001207066, intron 7 of 7)	-25761	NR_149073	110806272		NR_149073	ENSG00000280594	BTG3-AS1	ASBEL	BTG3 antisense RNA 1	ncRNA
73043	chr15	40871821	40872750	+	0	NA	TTS (NM_133639)	TTS (NM_133639)	1949	NM_133639	171177		NM_133639	ENSG00000104140	RHOV	ARHV|CHP|WRCH2	ras homolog family member V	protein-coding
125779	chr2	23687701	23687900	+	0	NA	intron (NM_052920, intron 6 of 13)	intron (NM_052920, intron 6 of 13)	239323	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
82174	chr16	14925751	14926930	+	0	NA	TTS (NR_106766)	TTS (NR_106766)	403	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
211289	chr7	103151021	103151280	+	0	NA	Intergenic	AluSx|SINE|Alu	-2051	NM_198990	222236		NM_198990	ENSG00000161048	NAPEPLD	C7orf18|FMP30|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding
76734	chr15	76286221	76287200	+	0	NA	intron (NM_001127716, intron 4 of 10)	intron (NM_001127716, intron 4 of 10)	24759	NM_001127716	2108		NM_000126	ENSG00000140374	ETFA	EMA|GA2|MADD	electron transfer flavoprotein subunit alpha	protein-coding
12129	chr1	100064171	100064530	+	0	NA	intron (NM_033055, intron 5 of 11)	AluSx1|SINE|Alu	26255	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
184434	chr5	99026851	99027550	+	0	NA	Intergenic	AluSz|SINE|Alu	98066	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
114252	chr19	11538271	11538530	+	0	NA	promoter-TSS (NM_001308342)	promoter-TSS (NM_001308342)	-451	NM_001308342	1264		NM_001299	ENSG00000130176	CNN1	HEL-S-14|SMCC|Sm-Calp	calponin 1	protein-coding
62288	chr13	98958001	98958200	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	19964	NM_001366683	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
104060	chr17	80152871	80153030	+	0	NA	Intergenic	Intergenic	-5822	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
9071	chr1	44834321	44834580	+	0	NA	intron (NM_001166292, intron 2 of 22)	intron (NM_001166292, intron 2 of 22)	8494	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
214561	chr7	150567951	150568280	+	0	NA	intron (NM_018326, intron 1 of 2)	intron (NM_018326, intron 1 of 2)	725	NM_018326	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
44242	chr11	96914321	96914400	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	405935	NR_135097	105369443		NR_135097	ENSG00000256684	LINC02737	-	long intergenic non-protein coding RNA 2737	ncRNA
205927	chr7	25861851	25862880	+	0	NA	Intergenic	Intergenic	-72246	NR_157808	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
217839	chr8	37701401	37701950	+	0	NA	Intergenic	Intergenic	5893	NM_025069	80139		NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
192441	chr6	24897021	24897750	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	13349	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
135929	chr2	171882401	171882600	+	0	NA	intron (NR_047549, intron 2 of 16)	MLT1K|LTR|ERVL-MaLR	11744	NM_003705	8604		NM_003705	ENSG00000115840	SLC25A12	AGC1|ARALAR|DEE39|EIEE39	solute carrier family 25 member 12	protein-coding
16819	chr1	155608471	155608880	+	0	NA	Intergenic	AluYm1|SINE|Alu	-1495	NM_001350782	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
169575	chr3	170414151	170414450	+	0	NA	Intergenic	Intergenic	-4568	NM_005602	5010		NM_005602	ENSG00000013297	CLDN11	HLD22|OSP|OTM	claudin 11	protein-coding
118083	chr19	34362951	34363250	+	0	NA	Intergenic	AluJb|SINE|Alu	-1640	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
197512	chr6	75752371	75752730	+	0	NA	intron (NR_160538, intron 1 of 32)	MIRb|SINE|MIR	3311	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
89339	chr16	88753851	88754150	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	11233	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
113732	chr19	10478551	10480100	+	0	NA	Intergenic	CpG	23446	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
55858	chr12	109291601	109292000	+	0	NA	intron (NM_213596, intron 2 of 9)	CpG	17484	NM_213596	121643		NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
80951	chr16	3860751	3861300	+	0	NA	intron (NM_004380, intron 1 of 30)	AluSq2|SINE|Alu	19095	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
115008	chr19	14067571	14068030	+	0	NA	Intergenic	AluSz|SINE|Alu	-4986	NM_001291291	113230		NM_001291291	ENSG00000141854	MISP3	-	MISP family member 3	protein-coding
219940	chr8	88148921	88149050	+	0	NA	intron (NM_005941, intron 4 of 9)	L1PA2|LINE|L1	178498	NM_005941	4325		NM_005941	ENSG00000156103	MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16	protein-coding
101509	chr17	67722551	67723150	+	0	NA	intron (NM_015462, intron 5 of 17)	AluJo|SINE|Alu	4914	NM_015462	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
231507	chr9	131403121	131403700	+	0	NA	intron (NM_013318, intron 1 of 31)	AluSx|SINE|Alu	9324	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
174458	chr4	39718751	39719330	+	0	NA	intron (NM_001111113, intron 1 of 4)	LTR12C|LTR|ERV1	20904	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
100111	chr17	58330201	58330900	+	0	NA	TTS (NR_029683)	TTS (NR_029683)	768	NR_029683	406934		NR_029683	ENSG00000284353	MIR142	MIRN142|mir-142	microRNA 142	ncRNA
62939	chr13	111296321	111296680	+	0	NA	intron (NM_001354051, intron 18 of 20)	intron (NM_001354051, intron 18 of 20)	-19685	NM_001303133	121793		NM_152324	ENSG00000153495	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
163131	chr3	50134001	50134200	+	0	NA	intron (NR_135301, intron 2 of 3)	intron (NR_135301, intron 2 of 3)	-20958	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
186736	chr5	139296851	139297530	+	0	NA	intron (NM_001194956, intron 1 of 13)	intron (NM_001194956, intron 1 of 13)	3440	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
43167	chr11	75349351	75350130	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	1921	NM_004041	408		NM_004041	ENSG00000137486	ARRB1	ARB1|ARR1	arrestin beta 1	protein-coding
55151	chr12	98744721	98745100	+	0	NA	3' UTR (NM_001352212, exon 9 of 9)	3' UTR (NM_001352212, exon 9 of 9)	99610	NM_181869	317		NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
51159	chr12	50168571	50169800	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-1652	NM_001281731	91012		NM_147190	ENSG00000139624	CERS5	LASS5|Trh4	ceramide synthase 5	protein-coding
202789	chr6	159100371	159101000	+	0	NA	Intergenic	Intergenic	-55533	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
111013	chr19	3052671	3053630	+	0	NA	3' UTR (NM_001130, exon 7 of 7)	3' UTR (NM_001130, exon 7 of 7)	-5515	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
151093	chr21	44840451	44840950	+	0	NA	Intergenic	Intergenic	-22571	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
132787	chr2	110071921	110072250	+	0	NA	Intergenic	CpG	-2043	NR_036225	100422994		NR_036225	ENSG00000265682	MIR4267	-	microRNA 4267	ncRNA
65422	chr14	50860501	50861180	+	0	NA	Intergenic	Intergenic	-11213	NM_001206673	145447		NM_181533	ENSG00000131969	ABHD12B	BEM46L3|C14orf29|c14_5314	abhydrolase domain containing 12B	protein-coding
120878	chr19	45564071	45564500	+	0	NA	intron (NM_025136, intron 1 of 1)	intron (NM_025136, intron 1 of 1)	20517	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
135194	chr2	158464701	158464980	+	0	NA	intron (NM_001377219, intron 1 of 21)	intron (NM_001377219, intron 1 of 21)	6947	NM_001377218	8502		NM_003628	ENSG00000144283	PKP4	p0071	plakophilin 4	protein-coding
12097	chr1	99969201	99970700	+	0	NA	promoter-TSS (NM_012243)	promoter-TSS (NM_012243)	-46	NM_001271684	23443		NM_012243	ENSG00000117620	SLC35A3	AMRS	solute carrier family 35 member A3	protein-coding
156811	chr22	41927851	41927950	+	0	NA	Intergenic	Intergenic	-1094	NM_052945	115650		NM_052945	ENSG00000159958	TNFRSF13C	BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin	TNF receptor superfamily member 13C	protein-coding
118389	chr19	35731501	35732000	+	0	NA	intron (NM_014727, intron 26 of 36)	intron (NM_014727, intron 26 of 36)	10702	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
116891	chr19	18698201	18699180	+	0	NA	intron (NM_015321, intron 1 of 13)	intron (NM_015321, intron 1 of 13)	15010	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
23359	chr1	228151151	228152030	+	0	NA	intron (NM_020435, intron 1 of 1)	intron (NM_020435, intron 1 of 1)	1660	NM_020435	57165		NM_020435	ENSG00000198835	GJC2	CX46.6|Cx47|GJA12|HLD2|LMPH1C|LMPHM3|PMLDAR|SPG44	gap junction protein gamma 2	protein-coding
22839	chr1	225443601	225443800	+	0	NA	Intergenic	Intergenic	-14845	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
72799	chr15	40052011	40052930	+	0	NA	intron (NR_040060, intron 2 of 2)	MER21C|LTR|ERVL	13159	NR_040061	100131089		NR_040059	ENSG00000248508	SRP14-DT	SRP14-AS1	SRP14 divergent transcript	ncRNA
227853	chr9	93568271	93568430	+	0	NA	Intergenic	L2a|LINE|L2	-8234	NM_005392	5253		NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding
25493	chr10	7031971	7032480	+	0	NA	Intergenic	L1MB3|LINE|L1	154559	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
231886	chr9	133025271	133025630	+	0	NA	Intergenic	LTR13|LTR|ERVK	4972	NR_135119	105376306		NR_135119	ENSG00000288989	LOC105376306	-	uncharacterized LOC105376306	ncRNA
58171	chr12	124964871	124965680	+	0	NA	intron (NM_032656, intron 13 of 26)	intron (NM_032656, intron 13 of 26)	23856	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
81930	chr16	11782871	11784200	+	0	NA	intron (NM_014153, intron 1 of 22)	MER20|DNA|hAT-Charlie	13723	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
36254	chr11	3772901	3773100	+	0	NA	intron (NR_157590, intron 6 of 31)	AluSz6|SINE|Alu	24546	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
156536	chr22	41425451	41426700	+	0	NA	Intergenic	Intergenic	20726	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
189167	chr5	171400051	171400150	+	0	NA	intron (NM_002520, intron 6 of 10)	L1MB2|LINE|L1	12251	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
111319	chr19	3620671	3621600	+	0	NA	intron (NM_021231, intron 2 of 10)	intron (NM_021231, intron 2 of 10)	5655	NM_001080543	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
90543	chr17	1496251	1496950	+	0	NA	intron (NM_016532, intron 9 of 11)	intron (NM_016532, intron 9 of 11)	-3914	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
151399	chr21	45985571	45986330	+	0	NA	intron (NM_001848, intron 3 of 34)	intron (NM_001848, intron 3 of 34)	4180	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
238531	chrX	153708451	153708830	+	0	NA	intron (NM_001139457, intron 4 of 7)	intron (NM_001139457, intron 4 of 7)	15461	NM_001139457	10134		NM_005745	ENSG00000185825	BCAP31	6C6-AG|BAP31|CDM|DDCH|DELXQ28|DXS1357E|MICRODELXq28	B cell receptor associated protein 31	protein-coding
36432	chr11	4609271	4609430	+	0	NA	Intergenic	L2c|LINE|L2	-1119	NM_018073	55128		NM_018073	ENSG00000167333	TRIM68	GC109|RNF137|SS-56|SS56	tripartite motif containing 68	protein-coding
223331	chr8	143825251	143825950	+	0	NA	intron (NM_078480, intron 1 of 11)	AluJb|SINE|Alu	3441	NM_001362896	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
212	chr1	819901	820650	+	0	NA	TTS (NR_103536)	TTS (NR_103536)	2904	NR_103536	400728		NM_207464	ENSG00000177757	FAM87B	-	family with sequence similarity 87 member B	ncRNA
103550	chr17	78664271	78665080	+	0	NA	Intergenic	Intergenic	-32618	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
146810	chr20	51220271	51220500	+	0	NA	Intergenic	Intergenic	-197278	NM_002237	3755		NM_002237	ENSG00000026559	KCNG1	K13|KCNG|KV6.1|kH2	potassium voltage-gated channel modifier subfamily G member 1	protein-coding
223004	chr8	143274821	143275080	+	0	NA	intron (NM_138465, intron 3 of 3)	intron (NM_138465, intron 3 of 3)	6750	NR_120683	100507316		NR_120682	ENSG00000253716	MINCR	LINC01604	MYC-induced long non-coding RNA	ncRNA
58878	chr13	18276371	18276630	+	0	NA	Intergenic	Intergenic	81203	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
88733	chr16	86072851	86073150	+	0	NA	Intergenic	Intergenic	-123181	NR_103859	100506542		NR_103859	ENSG00000269186	LINC01082	TCONS_00024492	long intergenic non-protein coding RNA 1082	ncRNA
213051	chr7	131056751	131058500	+	0	NA	intron (NR_109852, intron 2 of 5)	intron (NR_109852, intron 2 of 5)	49405	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
217765	chr8	31252071	31252300	+	0	NA	Intergenic	Intergenic	218375	NM_000553	7486		NM_000553	ENSG00000165392	WRN	RECQ3|RECQL2|RECQL3	WRN RecQ like helicase	protein-coding
24607	chr1	246498301	246498500	+	0	NA	intron (NM_001167740, intron 1 of 11)	L1MC4a|LINE|L1	8879	NM_001375962	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
34716	chr10	133529871	133530250	+	0	NA	intron (NM_000773, intron 2 of 8)	intron (NM_000773, intron 2 of 8)	2697	NM_000773	1571		NM_000773	ENSG00000130649	CYP2E1	CPE1|CYP2E|P450-J|P450C2E	cytochrome P450 family 2 subfamily E member 1	protein-coding
238816	chrX	154410651	154412300	+	0	NA	promoter-TSS (NM_001303465)	promoter-TSS (NM_001303465)	-64	NM_001303465	6901		NM_000116	ENSG00000102125	TAFAZZIN	BTHS|CMD3A|EFE|EFE2|G4.5|LVNCX|TAZ|Taz1	tafazzin, phospholipid-lysophospholipid transacylase	protein-coding
4753	chr1	23496771	23497700	+	0	NA	Intergenic	Intergenic	-13056	NM_017707	55616		NM_017707	ENSG00000088280	ASAP3	ACAP4|CENTB6|DDEFL1|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding
200785	chr6	137880351	137882090	+	0	NA	exon (NM_001270508, exon 9 of 9)	exon (NM_001270508, exon 9 of 9)	-12987	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
66994	chr14	67243171	67243530	+	0	NA	intron (NM_001256550, intron 1 of 14)	AluSx1|SINE|Alu	1915	NM_022474	64398		NM_022474	ENSG00000072415	PALS1	MPP5	protein associated with LIN7 1, MAGUK p55 family member	protein-coding
130615	chr2	85996501	85996900	+	0	NA	Intergenic	Intergenic	107420	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
105242	chr17	82399971	82400130	+	0	NA	intron (NM_175902, intron 7 of 9)	intron (NM_175902, intron 7 of 9)	-18297	NM_173620	284004		NM_173620	ENSG00000169660	HEXD	HEXDC	hexosaminidase D	protein-coding
219668	chr8	80503521	80503780	+	0	NA	intron (NM_023929, intron 2 of 6)	AluSz|SINE|Alu	17424	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
41237	chr11	65778071	65778750	+	0	NA	exon (NM_138368, exon 2 of 2)	exon (NM_138368, exon 2 of 2)	2566	NM_138368	91056		NM_138368	ENSG00000254470	AP5B1	AP-5|PP1030	adaptor related protein complex 5 subunit beta 1	protein-coding
193100	chr6	28899151	28899600	+	0	NA	Intergenic	AluSg|SINE|Alu	2845	NR_104117	414760		NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14	ncRNA
91761	chr17	6848901	6849100	+	0	NA	Intergenic	L1P3|LINE|L1	-4576	NR_002710	245		NR_002710	ENSG00000291084	ALOX12P2	ALOX12E	arachidonate 12-lipoxygenase pseudogene 2	pseudo
95769	chr17	38670921	38671430	+	0	NA	TTS (NM_001130677).2	TTS (NM_001130677).2	3782	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
123207	chr19	52732171	52732530	+	0	NA	intron (NM_001161499, intron 1 of 5)	intron (NM_001161499, intron 1 of 5)	-2468	NM_030972	81856		NM_030972	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
195376	chr6	36688701	36688900	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-9026	NM_001257357	401258		NM_207498	ENSG00000255587	RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
162857	chr3	49344771	49345850	+	0	NA	Intergenic	Intergenic	-5257	NM_001251877	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
95538	chr17	36602801	36603530	+	0	NA	intron (NM_024864, intron 2 of 4)	intron (NM_024864, intron 2 of 4)	1582	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
13072	chr1	111504871	111505250	+	0	NA	intron (NM_001081976, intron 1 of 5)	intron (NM_001081976, intron 1 of 5)	-1427	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
57593	chr12	122419801	122420000	+	0	NA	intron (NM_001247997, intron 1 of 25)	AluSz|SINE|Alu	2669	NM_001247997	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
130488	chr2	85575351	85575880	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1971	NM_003761	8673		NM_003761	ENSG00000118640	VAMP8	EDB|VAMP-8	vesicle associated membrane protein 8	protein-coding
235944	chrX	53263801	53264250	+	0	NA	intron (NM_001111125, intron 2 of 14)	intron (NM_001111125, intron 2 of 14)	17559	NM_015075	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
237236	chrX	109856801	109857150	+	0	NA	Intergenic	Intergenic	-13426	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
31918	chr10	100510721	100511450	+	0	NA	intron (NM_015490, intron 3 of 25)	intron (NM_015490, intron 3 of 25)	8776	NM_015490	25956		NM_015490	ENSG00000075826	SEC31B	SEC31B-1|SEC31L2	SEC31 homolog B, COPII coat complex component	protein-coding
186113	chr5	134136021	134136550	+	0	NA	intron (NM_001366502, intron 1 of 7)	intron (NM_001366502, intron 1 of 7)	12667	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
85315	chr16	49592871	49593230	+	0	NA	intron (NM_001379286, intron 5 of 7)	MamTip3|DNA|hAT-Tip100	71274	NM_001330533	23090		NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding
221476	chr8	124482521	124482850	+	0	NA	intron (NM_007218, intron 1 of 1)	AluSp|SINE|Alu	7805	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
165459	chr3	98602021	98602300	+	0	NA	Intergenic	Intergenic	-8549	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
224155	chr9	4937271	4937830	+	0	NA	Intergenic	MER81|DNA|hAT-Blackjack	-47536	NM_001322195	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
226325	chr9	69037601	69037950	+	0	NA	intron (NM_181425, intron 1 of 4)	AluSp|SINE|Alu	2023	NM_181425	2395		NM_000144	ENSG00000165060	FXN	CyaY|FA|FARR|FRDA|X25	frataxin	protein-coding
159363	chr3	13313621	13313880	+	0	NA	Intergenic	MIRb|SINE|MIR	-30493	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
86852	chr16	67932371	67932830	+	0	NA	promoter-TSS (NM_001907)	promoter-TSS (NM_001907)	-738	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
188194	chr5	150656301	150657930	+	0	NA	3' UTR (NM_007286, exon 3 of 3)	3' UTR (NM_007286, exon 3 of 3)	-3726	NM_133371	91977		NM_133371	ENSG00000164591	MYOZ3	CS-3|CS3|FATZ-3|FRP3	myozenin 3	protein-coding
223496	chr8	144075951	144076280	+	0	NA	Intergenic	MER68|LTR|ERVL	-2557	NM_019037	54512		NM_019037	ENSG00000178896	EXOSC4	RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A	exosome component 4	protein-coding
232098	chr9	133681751	133682150	+	0	NA	intron (NM_001134707, intron 17 of 20)	intron (NM_001134707, intron 17 of 20)	-24542	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
162351	chr3	47823051	47823350	+	0	NA	intron (NM_014966, intron 5 of 22)	THE1B|LTR|ERVL-MaLR	20062	NR_075079	22907		NM_014966	ENSG00000132153	DHX30	DDX30|NEDMIAL|RETCOR	DExH-box helicase 30	protein-coding
17246	chr1	156355251	156355800	+	0	NA	Intergenic	AluYh3|SINE|Alu	-13686	NM_020407	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
62106	chr13	95185601	95186220	+	0	NA	intron (NM_001301830, intron 10 of 19)	intron (NM_001301830, intron 10 of 19)	-24434	NR_145733	109616987		NR_145733		SNORD13G	-	small nucleolar RNA, C/D box 13G	snoRNA
16443	chr1	154575321	154575850	+	0	NA	intron (NM_000748, intron 5 of 5)	L2c|LINE|L2	7807	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
61502	chr13	52654871	52655230	+	0	NA	intron (NM_006704, intron 2 of 12)	MER5A|DNA|hAT-Charlie	2214	NM_001130912	10910		NM_006704	ENSG00000165416	SUGT1	SGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein-coding
7448	chr1	33038151	33038250	+	0	NA	Intergenic	Intergenic	-1289	NM_001319143	204		NM_001625	ENSG00000004455	AK2	ADK2	adenylate kinase 2	protein-coding
66068	chr14	58430221	58430480	+	0	NA	intron (NM_001329946, intron 2 of 29)	intron (NM_001329946, intron 2 of 29)	2631	NM_001329944	9786		NM_014749	ENSG00000100578	KIAA0586	JBTS23|SRTD14|Talpid3	KIAA0586	protein-coding
69629	chr14	97705521	97706400	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	-19302	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
155052	chr22	37499651	37500150	+	0	NA	intron (NM_014550, intron 11 of 19)	(GCTGCCT)n|Simple_repeat|Simple_repeat	-13513	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
121424	chr19	47017851	47018350	+	0	NA	Intergenic	AluJr|SINE|Alu	-1737	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
142923	chr20	18464871	18465030	+	0	NA	intron (NM_001351684, intron 2 of 20)	AluSx1|SINE|Alu	2080	NM_001351684	55184		NM_018152	ENSG00000089091	DZANK1	ANKRD64|C20orf12|C20orf84	double zinc ribbon and ankyrin repeat domains 1	protein-coding
115464	chr19	15352851	15352950	+	0	NA	TTS (NM_005858)	TTS (NM_005858)	-20361	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
93220	chr17	17832851	17832950	+	0	NA	intron (NM_001005291, intron 1 of 19)	AluY|SINE|Alu	4086	NM_001005291	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
145714	chr20	45036971	45037880	+	0	NA	intron (NM_006282, intron 10 of 10)	intron (NM_006282, intron 10 of 10)	63702	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
28055	chr10	43264401	43265280	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	2225	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
20784	chr1	201042671	201043250	+	0	NA	intron (NM_000069, intron 40 of 43)	intron (NM_000069, intron 40 of 43)	-19246	NM_001252102	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
212472	chr7	128523171	128524650	+	0	NA	Intergenic	(GAAT)n|Simple_repeat|Simple_repeat	47162	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
207948	chr7	52302271	52302630	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-733183	NM_182595	285877		NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin like 12	protein-coding
154208	chr22	31493121	31493380	+	0	NA	Intergenic	AluY|SINE|Alu	-2889	NM_001258325	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
53578	chr12	67667871	67668030	+	0	NA	Intergenic	Intergenic	19205	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
42916	chr11	73389401	73390080	+	0	NA	intron (NM_152222, intron 2 of 10)	intron (NM_152222, intron 2 of 10)	13072	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
67031	chr14	67598471	67599000	+	0	NA	intron (NM_004569, intron 1 of 3)	AluSz|SINE|Alu	1533	NM_004569	5283		NM_004569	ENSG00000100564	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis class H	protein-coding
107198	chr18	36028721	36029180	+	0	NA	intron (NM_018170, intron 4 of 6)	intron (NM_018170, intron 4 of 6)	38609	NM_001303411	55197		NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
36774	chr11	9404621	9404880	+	0	NA	intron (NM_006391, intron 2 of 24)	AluY|SINE|Alu	20098	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
176041	chr4	82372471	82372700	+	0	NA	intron (NM_002138, intron 1 of 7)	intron (NM_002138, intron 1 of 7)	1406	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
48320	chr12	9022701	9023180	+	0	NA	Intergenic	MER21B|LTR|ERVL	33315	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
125746	chr2	20671101	20671800	+	0	NA	3' UTR (NM_182828, exon 2 of 2)	3' UTR (NM_182828, exon 2 of 2)	4306	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
153379	chr22	24546371	24546530	+	0	NA	intron (NM_031444, intron 4 of 5)	intron (NM_031444, intron 4 of 5)	8688	NM_001284257	83606		NM_031444	ENSG00000138867	GUCD1	C22orf13|LLN4	guanylyl cyclase domain containing 1	protein-coding
148405	chr20	63940951	63942530	+	0	NA	promoter-TSS (NR_031735)	promoter-TSS (NR_031735)	-196	NR_031735	100302137		NR_031735	ENSG00000284433	MIR1914	MIRN1914|hsa-mir-1914	microRNA 1914	ncRNA
36615	chr11	6812351	6813100	+	0	NA	Intergenic	L1PA16|LINE|L1	-16817	NM_003696	8590		NM_003696	ENSG00000184933	OR6A2	I7|OR11-55|OR6A1|OR6A2P	olfactory receptor family 6 subfamily A member 2	protein-coding
173165	chr4	6692051	6693180	+	0	NA	Intergenic	Intergenic	-1263	NM_005980	6286		NM_005980	ENSG00000163993	S100P	MIG9	S100 calcium binding protein P	protein-coding
141608	chr2	241664071	241664230	+	0	NA	intron (NM_013325, intron 7 of 12)	intron (NM_013325, intron 7 of 12)	22665	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
137806	chr2	199956751	199956930	+	0	NA	intron (NM_001369399, intron 2 of 4)	intron (NM_001369399, intron 2 of 4)	-1349	NM_001039693	129450		NM_152382	ENSG00000162971	TYW5	C2orf60|hTYW5	tRNA-yW synthesizing protein 5	protein-coding
156317	chr22	40639551	40640150	+	0	NA	Intergenic	AluY|SINE|Alu	-3131	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
116397	chr19	17964171	17964700	+	0	NA	intron (NM_002248, intron 2 of 10)	intron (NM_002248, intron 2 of 10)	13133	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
144088	chr20	33731551	33733830	+	0	NA	intron (NM_001282933, intron 1 of 14)	CpG	694	NM_001282933	84905		NM_032819	ENSG00000131061	ZNF341	HIES3	zinc finger protein 341	protein-coding
212565	chr7	128887351	128888230	+	0	NA	intron (NM_001366122, intron 22 of 39)	(CA)n|Simple_repeat|Simple_repeat	21460	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
79745	chr16	1342421	1344600	+	0	NA	exon (NM_003933, exon 15 of 34)	exon (NM_003933, exon 15 of 34)	7313	NM_001199096	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
180403	chr5	10348871	10349500	+	0	NA	Intergenic	Intergenic	-4510	NM_005885	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
145613	chr20	44649251	44649500	+	0	NA	intron (NR_136160, intron 1 of 10)	intron (NR_136160, intron 1 of 10)	2324	NM_000022	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
14185	chr1	121547251	121547350	+	0	NA	intron (NR_003955, intron 1 of 7)	L2a|LINE|L2	28188	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
141958	chr20	1300701	1301680	+	0	NA	intron (NM_014723, intron 5 of 5)	intron (NM_014723, intron 5 of 5)	12483	NM_015685	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
87691	chr16	74664471	74665000	+	0	NA	5' UTR (NM_001370543, exon 2 of 13)	5' UTR (NM_001370543, exon 2 of 13)	2142	NM_018124	55159		NM_018124	ENSG00000168411	RFWD3	FANCW|RNF201	ring finger and WD repeat domain 3	protein-coding
223837	chr8	145050301	145050500	+	0	NA	Intergenic	LTR43|LTR|ERV1	-2067	NM_023080	65265		NM_023080	ENSG00000182307	C8orf33	-	chromosome 8 open reading frame 33	protein-coding
194445	chr6	33167701	33167900	+	0	NA	exon (NM_080679, exon 52 of 63).6	exon (NM_080679, exon 52 of 63).6	24476	NR_138084	414768		NR_138084		HCG24	-	HLA complex group 24	ncRNA
23157	chr1	226730071	226730530	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	8875	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
195043	chr6	35488051	35488950	+	0	NA	intron (NM_003214, intron 1 of 12)	intron (NM_003214, intron 1 of 12)	8579	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
85233	chr16	48231871	48232100	+	0	NA	5' UTR (NM_033151, exon 1 of 29)	5' UTR (NM_033151, exon 1 of 29)	286	NM_033151	85320		NM_032583	ENSG00000121270	ABCC11	EWWD|MRP8|WW	ATP binding cassette subfamily C member 11	protein-coding
207660	chr7	45083821	45084650	+	0	NA	exon (NM_001146334, exon 2 of 8)	exon (NM_001146334, exon 2 of 8)	4734	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
192712	chr6	26327741	26329280	+	0	NA	Intergenic	AluSz|SINE|Alu	-36649	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
139791	chr2	230256601	230257250	+	0	NA	intron (NM_001278453, intron 9 of 23)	MIRc|SINE|MIR	31189	NM_007237	11262		NM_007237	ENSG00000079263	SP140	LYSP100|LYSP100-A|LYSP100-B	SP140 nuclear body protein	protein-coding
51357	chr12	51721451	51721830	+	0	NA	exon (NM_001177984, exon 12 of 26)	exon (NM_001177984, exon 12 of 26)	110277	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
92378	chr17	8228501	8229430	+	0	NA	intron (NR_046431, intron 19 of 21)	intron (NR_046431, intron 19 of 21)	-4922	NR_026951	284029		NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324|RNA00324|TP53LC03	long intergenic non-protein coding RNA 324	ncRNA
104119	chr17	80313351	80314480	+	0	NA	intron (NM_020954, intron 15 of 16)	intron (NM_020954, intron 15 of 16)	53063	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
43369	chr11	76919901	76920480	+	0	NA	intron (NM_001300953, intron 1 of 9)	LTR41|LTR|ERVL	59272	NM_001300955	55331		NM_018367	ENSG00000078124	ACER3	APHC|PHCA|PLDECO	alkaline ceramidase 3	protein-coding
234117	chrX	9573701	9573900	+	0	NA	intron (NM_001139468, intron 3 of 17)	intron (NM_001139468, intron 3 of 17)	108742	NM_005647	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
221449	chr8	124267001	124267230	+	0	NA	Intergenic	LTR33|LTR|ERVL	-19717	NR_125420	101927588		NR_125420	ENSG00000214803	LOC101927588	-	uncharacterized LOC101927588	ncRNA
210680	chr7	100554971	100555480	+	0	NA	intron (NM_006076, intron 5 of 11)	intron (NM_006076, intron 5 of 11)	16022	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
107166	chr18	35376651	35377750	+	0	NA	intron (NM_001322290, intron 1 of 4)	CpG	137	NM_001322286	252884		NM_145756	ENSG00000186496	ZNF396	ZSCAN14	zinc finger protein 396	protein-coding
153073	chr22	23308001	23308200	+	0	NA	intron (NM_004327, intron 16 of 22)	intron (NM_004327, intron 16 of 22)	-18516	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
110186	chr19	1673371	1673530	+	0	NA	Intergenic	Intergenic	-20835	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
55410	chr12	104479451	104479980	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	22767	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
74403	chr15	58933011	58934600	+	0	NA	promoter-TSS (NM_024755)	promoter-TSS (NM_024755)	-126	NR_135042	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
120907	chr19	45601071	45601430	+	0	NA	intron (NM_005282, intron 1 of 1)	intron (NM_005282, intron 1 of 1)	962	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
56585	chr12	117837201	117837500	+	0	NA	intron (NM_173598, intron 3 of 19)	MIR3|SINE|MIR	131640	NM_173598	283455		NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding
195349	chr6	36631821	36632080	+	0	NA	Intergenic	Intergenic	-9438	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
207589	chr7	44959331	44960480	+	0	NA	Intergenic	Intergenic	19110	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
164967	chr3	71276551	71276850	+	0	NA	intron (NM_001012505, intron 5 of 6)	L1MA5A|LINE|L1	-13058	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
137587	chr2	197275651	197275750	+	0	NA	intron (NR_046837, intron 5 of 5)	MER20B|DNA|hAT-Charlie	26819	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
156084	chr22	40051221	40052100	+	0	NA	intron (NM_001024843, intron 1 of 23)	intron (NM_001024843, intron 1 of 23)	6843	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
210569	chr7	100354851	100354950	+	0	NA	TTS (NR_103728)	TTS (NR_103728)	-1751	NR_106899	102466747		NR_106899	ENSG00000284012	MIR6840	hsa-mir-6840	microRNA 6840	ncRNA
172937	chr4	3516901	3518130	+	0	NA	intron (NR_110005, intron 5 of 7)	intron (NR_110005, intron 5 of 7)	14634	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
15844	chr1	151395971	151396680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3248	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
89137	chr16	88514071	88514230	+	0	NA	intron (NR_148997, intron 3 of 3)	intron (NR_148997, intron 3 of 3)	16903	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
84826	chr16	31104401	31104600	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3886	NM_005881	10295		NM_005881	ENSG00000103507	BCKDK	BCKDKD|BDK	branched chain keto acid dehydrogenase kinase	protein-coding
75697	chr15	67863401	67864030	+	0	NA	Intergenic	CpG	-23670	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
139460	chr2	223934051	223934350	+	0	NA	intron (NM_020830, intron 1 of 11)	AluSz|SINE|Alu	11135	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
120657	chr19	45085121	45085380	+	0	NA	TTS (NR_134887)	TTS (NR_134887)	5141	NR_134887	105372419		NR_134887	ENSG00000267348	GEMIN7-AS1	-	GEMIN7 antisense RNA 1	ncRNA
25075	chr10	3836351	3836700	+	0	NA	Intergenic	Intergenic	2575	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
232066	chr9	133475551	133475650	+	0	NA	exon (NM_001145099, exon 5 of 9).2	exon (NM_001145099, exon 5 of 9).2	3499	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
223468	chr8	144022401	144023350	+	0	NA	intron (NM_198572, intron 1 of 4)	intron (NM_198572, intron 1 of 4)	10595	NM_001134374	375686		NM_198572	ENSG00000186583	SPATC1	SPATA15	spermatogenesis and centriole associated 1	protein-coding
68414	chr14	81176371	81176530	+	0	NA	3' UTR (NM_201595, exon 9 of 9)	3' UTR (NM_201595, exon 9 of 9)	26384	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
201035	chr6	141989271	141989550	+	0	NA	Intergenic	Intergenic	-143749	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
80248	chr16	2208771	2209400	+	0	NA	TTS (NM_182563)	TTS (NM_182563)	1983	NM_182563	283870		NM_182563	ENSG00000182685	BRICD5	C16orf79	BRICHOS domain containing 5	protein-coding
146204	chr20	48780601	48781080	+	0	NA	intron (NM_020820, intron 1 of 39)	L1MC4a|LINE|L1	47159	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
12327	chr1	101005071	101005750	+	0	NA	intron (NM_015958, intron 4 of 7)	intron (NM_015958, intron 4 of 7)	20374	NM_001077395	51611		NM_015958	ENSG00000117543	DPH5	AD-018|CGI-30|HSPC143|NEDSFF|NPD015	diphthamide biosynthesis 5	protein-coding
189239	chr5	171966471	171966630	+	0	NA	intron (NM_012300, intron 1 of 12)	intron (NM_012300, intron 1 of 12)	40088	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
76472	chr15	74863151	74864300	+	0	NA	intron (NM_001320778, intron 1 of 9)	intron (NM_001320778, intron 1 of 9)	9640	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
208152	chr7	64566601	64566800	+	0	NA	Intergenic	AluSg7|SINE|Alu	-3573	NM_001130022	340252		NM_178558	ENSG00000173041	ZNF680	-	zinc finger protein 680	protein-coding
222151	chr8	132687401	132687600	+	0	NA	Intergenic	Intergenic	-11955	NM_001321966	23639		NM_012472	ENSG00000129295	DNAAF11	CILD19|LRRC6|LRTP|TSLRP|tilB	dynein axonemal assembly factor 11	protein-coding
212104	chr7	116181951	116182250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-28439	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
166125	chr3	111314951	111315050	+	0	NA	Intergenic	L3|LINE|CR1	-227197	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
188929	chr5	160438901	160439950	+	0	NA	Intergenic	Intergenic	17515	NM_001282382	9232		NM_004219	ENSG00000164611	PTTG1	EAP1|ECRAR|HPTTG|PTTG|TUTR1	PTTG1 regulator of sister chromatid separation, securin	protein-coding
159069	chr3	11764851	11765350	+	0	NA	Intergenic	Intergenic	-44561	NM_014667	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
173504	chr4	9503271	9503430	+	0	NA	Intergenic	SATR1|Satellite|Satellite	52966	NR_031688	100302277		NR_031688	ENSG00000221275	MIR548I2	MIR548I-2|MIRN548I2|hsa-mir-548i-2|mir-548i-2	microRNA 548i-2	ncRNA
98269	chr17	46192311	46193700	+	0	NA	promoter-TSS (NR_034172)	promoter-TSS (NR_034172)	-223	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
162678	chr3	48928051	48928230	+	0	NA	3' UTR (NM_001349230, exon 5 of 5)	3' UTR (NM_001349230, exon 5 of 5)	-8755	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
186360	chr5	134852971	134853630	+	0	NA	intron (NM_001135586, intron 1 of 1)	AluSp|SINE|Alu	7332	NM_001300894	134553		NM_152409	ENSG00000181904	C5orf24	-	chromosome 5 open reading frame 24	protein-coding
50729	chr12	48976401	48976780	+	0	NA	Intergenic	MIRb|SINE|MIR	-1732	NM_005430	7471		NM_005430	ENSG00000125084	WNT1	BMND16|INT1|OI15	Wnt family member 1	protein-coding
27510	chr10	32294721	32295530	+	0	NA	intron (NR_168511, intron 2 of 13)	intron (NR_168511, intron 2 of 13)	52033	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
77082	chr15	78907251	78907350	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	34311	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
92667	chr17	10744371	10745100	+	0	NA	intron (NR_073456, intron 2 of 3)	intron (NR_073456, intron 2 of 3)	-14406	NM_001330140	388335		NM_001004313	ENSG00000187824	TMEM220	-	transmembrane protein 220	protein-coding
78166	chr15	90478971	90479930	+	0	NA	intron (NM_003870, intron 26 of 37)	intron (NM_003870, intron 26 of 37)	-50473	NM_001042574	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
106401	chr18	13446671	13446830	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-13197	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
117209	chr19	19402171	19402550	+	0	NA	intron (NM_001384535, intron 1 of 10)	intron (NM_001384535, intron 1 of 10)	-3315	NM_001384527	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
56482	chr12	116202601	116202800	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	-54046	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
173289	chr4	7066471	7066630	+	0	NA	intron (NM_025196, intron 1 of 3)	intron (NM_025196, intron 1 of 3)	1514	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
146660	chr20	50464121	50464670	+	0	NA	Intergenic	Intergenic	-45926	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
60504	chr13	41327701	41328350	+	0	NA	intron (NM_024561, intron 6 of 19)	intron (NM_024561, intron 6 of 19)	-15987	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
130601	chr2	85886321	85886850	+	0	NA	intron (NM_001354229, intron 1 of 7)	intron (NM_001354229, intron 1 of 7)	964	NM_001354238	8869		NM_003896	ENSG00000115525	ST3GAL5	SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
138160	chr2	202575121	202575730	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-59544	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
94239	chr17	28666371	28666730	+	0	NA	intron (NM_003170, intron 1 of 36)	intron (NM_003170, intron 1 of 36)	4345	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
202438	chr6	157988151	157988250	+	0	NA	intron (NM_003898, intron 1 of 26)	intron (NM_003898, intron 1 of 26)	6337	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
192559	chr6	25404251	25405080	+	0	NA	intron (NM_001173977, intron 2 of 36)	AluSx|SINE|Alu	125291	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
238666	chrX	154026771	154027130	+	0	NA	3' UTR (NM_001316337, exon 5 of 5)	3' UTR (NM_001316337, exon 5 of 5)	-6961	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
15914	chr1	151709821	151710650	+	0	NA	intron (NM_007185, intron 2 of 12)	intron (NM_007185, intron 2 of 12)	6568	NM_001172649	11189		NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP Elav-like family member 3	protein-coding
49526	chr12	25595601	25595800	+	0	NA	intron (NM_001352232, intron 1 of 10)	L1PBa1|LINE|L1	-42417	NM_001145729	160492		NM_152590	ENSG00000152936	LMNTD1	IFLTD1|LMNARS1|PAS1C1	lamin tail domain containing 1	protein-coding
79827	chr16	1432321	1433630	+	0	NA	exon (NM_001365310, exon 2 of 2)	exon (NM_001365310, exon 2 of 2)	1897	NM_001365310	105371045		NM_001365310	ENSG00000284395	PERCC1	DIAR11|ICR|gs104	proline and glutamate rich with coiled coil 1	protein-coding
74136	chr15	55245151	55245450	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	24986	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
100564	chr17	62703371	62704550	+	0	NA	TTS (NM_001288780)	TTS (NM_001288780)	-2246	NR_147886	105371855		NR_147886	ENSG00000265702	LOC105371855	-	uncharacterized LOC105371855	ncRNA
117584	chr19	21585501	21585700	+	0	NA	Intergenic	Intergenic	-64068	NR_144514	400682		NR_144514		LOC400682	-	zinc finger protein 100-like	pseudo
112266	chr19	5799121	5800200	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-5407	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
94988	chr17	32348651	32348950	+	0	NA	Intergenic	Intergenic	-1309	NR_030362	693217		NR_030362	ENSG00000283774	MIR632	MIRN632|hsa-mir-632	microRNA 632	ncRNA
107007	chr18	32060571	32060730	+	0	NA	intron (NM_017831, intron 4 of 5)	intron (NM_017831, intron 4 of 5)	-31224	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
237009	chrX	102345971	102346230	+	0	NA	Intergenic	Intergenic	93841	NM_022053	56001		NM_017809	ENSG00000269405	NXF2	CT39|TAPL-2|TCP11X2	nuclear RNA export factor 2	protein-coding
57072	chr12	121018001	121018200	+	0	NA	Intergenic	Intergenic	-1613	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
130951	chr2	87514101	87514330	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	44265	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
146589	chr20	50109751	50110900	+	0	NA	intron (NM_001257398, intron 1 of 4)	intron (NM_001257398, intron 1 of 4)	2825	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
168078	chr3	138173721	138175500	+	0	NA	exon (NM_016216, exon 1 of 8)	exon (NM_016216, exon 1 of 8)	311	NM_016216	51163		NM_016216	ENSG00000138231	DBR1	XGIP	debranching RNA lariats 1	protein-coding
21782	chr1	206931751	206932130	+	0	NA	intron (NM_002644, intron 8 of 10)	intron (NM_002644, intron 8 of 10)	-9999	NM_005449	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
98809	chr17	48299401	48300030	+	0	NA	intron (NR_131239, intron 2 of 2)	L2c|LINE|L2	5368	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
13593	chr1	116347001	116347730	+	0	NA	Intergenic	L2|LINE|L2	-25879	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
217928	chr8	38077951	38078250	+	0	NA	Intergenic	AluSx|SINE|Alu	-27393	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
135838	chr2	170714401	170714700	+	0	NA	promoter-TSS (NR_027433)	promoter-TSS (NR_027433)	17	NR_027433	440925		NM_001013712	ENSG00000222033	LINC01124	-	long intergenic non-protein coding RNA 1124	ncRNA
214114	chr7	144127771	144128030	+	0	NA	intron (NM_001001659, intron 1 of 1)	intron (NM_001001659, intron 1 of 1)	4724	NM_001001659	135941		NM_001001659	ENSG00000221938	OR2A14	OR2A14P|OR2A6|OST182	olfactory receptor family 2 subfamily A member 14	protein-coding
156661	chr22	41643671	41644130	+	0	NA	intron (NM_001288976, intron 6 of 12)	AluJb|SINE|Alu	22605	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
8864	chr1	43448801	43449900	+	0	NA	promoter-TSS (NR_046744)	promoter-TSS (NR_046744)	-706	NR_046744	100873952		NR_046744	ENSG00000229372	SZT2-AS1	-	SZT2 antisense RNA 1	ncRNA
185019	chr5	115379601	115380000	+	0	NA	Intergenic	Intergenic	-83146	NM_001375899	153733		NM_152549	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
226459	chr9	71724801	71725200	+	0	NA	intron (NM_001135820, intron 10 of 22)	intron (NM_001135820, intron 10 of 22)	43513	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
207204	chr7	43641671	43642530	+	0	NA	intron (NR_146940, intron 3 of 6)	intron (NR_146940, intron 3 of 6)	58992	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
148742	chr21	7563871	7564030	+	0	NA	Intergenic	Intergenic	117746	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
39052	chr11	47916751	47917050	+	0	NA	Intergenic	Intergenic	-63659	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
120582	chr19	45001701	45003650	+	0	NA	intron (NM_006509, intron 1 of 10)	intron (NM_006509, intron 1 of 10)	1211	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
76575	chr15	75312651	75313350	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-23063	NM_017828	54939		NM_017828	ENSG00000140365	COMMD4	-	COMM domain containing 4	protein-coding
204365	chr7	2948671	2949050	+	0	NA	intron (NM_032415, intron 2 of 24)	L1MB8|LINE|L1	95007	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
33623	chr10	119641101	119641500	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-10080	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
154944	chr22	37236171	37236930	+	0	NA	intron (NM_002872, intron 2 of 6)	intron (NM_002872, intron 2 of 6)	7719	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
156805	chr22	41922471	41924100	+	0	NA	promoter-TSS (NR_039760)	promoter-TSS (NR_039760)	12	NR_039760	100616259		NR_039760	ENSG00000283829	MIR378I	-	microRNA 378i	ncRNA
137652	chr2	197425801	197427150	+	0	NA	intron (NM_001005526, intron 1 of 4)	intron (NM_001005526, intron 1 of 4)	8553	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
106293	chr18	12819501	12819700	+	0	NA	intron (NM_001207013, intron 5 of 10)	L1ME1|LINE|L1	21362	NM_001308287	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
6985	chr1	31811721	31812180	+	0	NA	intron (NM_001281988, intron 1 of 14)	intron (NM_001281988, intron 1 of 14)	4101	NM_001281987	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
132735	chr2	109331971	109332580	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-18650	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	ncRNA
101766	chr17	72931201	72931400	+	0	NA	intron (NM_001352691, intron 6 of 10)	intron (NM_001352691, intron 6 of 10)	161388	NM_001352691	201266		NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP-11|ZIP11	solute carrier family 39 member 11	protein-coding
149564	chr21	33227501	33228680	+	0	NA	Intergenic	AluY|SINE|Alu	-1805	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
219818	chr8	81633251	81633550	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	-2123	NR_146081	650747		NR_146081		IMPA1P1	IMPA1P	inositol monophosphatase 1 pseudogene 1	pseudo
91786	chr17	7013201	7013800	+	0	NA	non-coding (NR_037715, exon 2 of 4)	non-coding (NR_037715, exon 2 of 4)	876	NM_001004333	440400		NM_001004333	ENSG00000219200	RNASEK	-	ribonuclease K	protein-coding
90088	chr16	90026901	90027100	+	0	NA	intron (NM_001286208, intron 1 of 9)	AluSx4|SINE|Alu	2901	NR_122031	750		NM_001214	ENSG00000221819	GAS8-AS1	C16orf3	GAS8 antisense RNA 1	ncRNA
21991	chr1	209751201	209752730	+	0	NA	Intergenic	Intergenic	-4088	NR_109871	80342		NM_025228	ENSG00000009790	TRAF3IP3	T3JAM	TRAF3 interacting protein 3	protein-coding
25999	chr10	12070751	12071050	+	0	NA	intron (NM_018706, intron 1 of 16)	MLT1J-int|LTR|ERVL-MaLR	1946	NM_018706	55526		NM_018706	ENSG00000181192	DHTKD1	AAKAD|AMOXAD|CMT2Q|E1a|OADC-E1|OADH-E1	dehydrogenase E1 and transketolase domain containing 1	protein-coding
232107	chr9	133704721	133704980	+	0	NA	intron (NM_001134707, intron 12 of 20)	intron (NM_001134707, intron 12 of 20)	33502	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
209452	chr7	76445201	76446400	+	0	NA	Intergenic	Intergenic	-15855	NM_020892	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
102109	chr17	75007501	75007700	+	0	NA	Intergenic	AluYh3|SINE|Alu	-5070	NM_001303265	3396		NM_001545	ENSG00000167862	MRPL58	DS-1|DS1|ICT1|MRP-L58|mL62	mitochondrial ribosomal protein L58	protein-coding
8393	chr1	40390851	40390950	+	0	NA	intron (NM_001198978, intron 1 of 9)	intron (NM_001198978, intron 1 of 9)	-2445	NM_001198979	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
39544	chr11	61111801	61112500	+	0	NA	intron (NM_014207, intron 1 of 10)	intron (NM_014207, intron 1 of 10)	9661	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
194702	chr6	33700351	33700880	+	0	NA	intron (NM_032340, intron 2 of 3)	intron (NM_032340, intron 2 of 3)	2487	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
137902	chr2	200862001	200865730	+	0	NA	intron (NR_027856, intron 1 of 10)	intron (NR_027856, intron 1 of 10)	696	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
181971	chr5	55133951	55134480	+	0	NA	intron (NM_152623, intron 5 of 11)	intron (NM_152623, intron 5 of 11)	-25956	NR_131338	493869		NM_001008397	ENSG00000164294	GPX8	EPLA847|GPx-8|GSHPx-8|UNQ847	glutathione peroxidase 8 (putative)	protein-coding
130865	chr2	87403151	87403250	+	0	NA	Intergenic	AluSx3|SINE|Alu	-52227	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
51219	chr12	50623271	50623630	+	0	NA	intron (NM_173602, intron 1 of 37)	(TCTC)n|Simple_repeat|Simple_repeat	118465	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
61356	chr13	50982221	50982480	+	0	NA	Intergenic	L1PA2|LINE|L1	-71638	NR_046552	100874255		NR_046552		RNASEH2B-AS1	-	RNASEH2B antisense RNA 1	ncRNA
55211	chr12	101793521	101794150	+	0	NA	intron (NM_024312, intron 2 of 20)	(TTAT)n|Simple_repeat|Simple_repeat	37124	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
38000	chr11	35058921	35059850	+	0	NA	Intergenic	MIR3|SINE|MIR	78647	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
72547	chr15	34344101	34344700	+	0	NA	intron (NM_001284293, intron 1 of 6)	AluSg4|SINE|Alu	1085	NM_001284293	256646		NM_175741	ENSG00000184507	NUTM1	C15orf55|FAM22H|NUT	NUT midline carcinoma family member 1	protein-coding
216433	chr8	19457901	19458500	+	0	NA	intron (NR_148901, intron 4 of 9)	intron (NR_148901, intron 4 of 9)	144224	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
42846	chr11	73152471	73153430	+	0	NA	Intergenic	Intergenic	-10632	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
61405	chr13	51664071	51664230	+	0	NA	intron (NM_052950, intron 2 of 11)	intron (NM_052950, intron 2 of 11)	79688	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
65899	chr14	55271071	55272230	+	0	NA	promoter-TSS (NM_152231)	promoter-TSS (NM_152231)	229	NM_017943	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
61891	chr13	77314621	77314880	+	0	NA	intron (NM_015057, intron 1 of 82)	L1MC1|LINE|L1	12344	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
95618	chr17	37607601	37608590	+	0	NA	intron (NM_001163544, intron 1 of 20).2	intron (NM_001163544, intron 1 of 20).2	1323	NM_001163546	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
160421	chr3	28290721	28291240	+	0	NA	intron (NM_001331189, intron 3 of 4)	MLT1F2|LTR|ERVL-MaLR	49361	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
220048	chr8	93694001	93694350	+	0	NA	intron (NR_033858, intron 1 of 10)	intron (NR_033858, intron 1 of 10)	6258	NR_033858	642924		NR_033858	ENSG00000246662	CIBAR1-DT	LINC00535	CIBAR1 divergent transcript	ncRNA
171051	chr3	195257771	195258130	+	0	NA	intron (NM_152531, intron 1 of 3)	intron (NM_152531, intron 1 of 3)	-10030	NM_001308069	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
36114	chr11	3090371	3090730	+	0	NA	intron (NM_145638, intron 19 of 20)	intron (NM_145638, intron 19 of 20)	-33127	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
205469	chr7	17302721	17303450	+	0	NA	intron (NM_001621, intron 1 of 10)	intron (NM_001621, intron 1 of 10)	4433	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
101798	chr17	73231571	73233250	+	0	NA	promoter-TSS (NM_001289410)	promoter-TSS (NM_001289410)	-16	NM_032837	84923		NM_032837	ENSG00000133193	VCF1	FAM104A	VCP nuclear cofactor family member 1	protein-coding
135467	chr2	161282371	161282530	+	0	NA	Intergenic	Intergenic	-25975	NM_005805	10213		NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	proteasome 26S subunit, non-ATPase 14	protein-coding
177447	chr4	113316901	113317200	+	0	NA	intron (NM_001354273, intron 23 of 42)	intron (NM_001354273, intron 23 of 42)	24211	NM_001354279	287		NM_001148	ENSG00000145362	ANK2	ANK-2|CFAP87|FAP87|LQT4|brank-2	ankyrin 2	protein-coding
200737	chr6	137738301	137738500	+	0	NA	intron (NR_121618, intron 1 of 2)	intron (NR_121618, intron 1 of 2)	637	NR_121618	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
62433	chr13	99314451	99316130	+	0	NA	intron (NR_026644, intron 5 of 8)	intron (NR_026644, intron 5 of 8)	-7891	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
130739	chr2	86788811	86790000	+	0	NA	non-coding (NR_027353, exon 5 of 7)	non-coding (NR_027353, exon 5 of 7)	1508	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
185313	chr5	126776151	126777500	+	0	NA	promoter-TSS (NM_001198557)	promoter-TSS (NM_001198557)	202	NR_134488	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
35347	chr11	1194751	1194850	+	0	NA	intron (NM_001304359, intron 35 of 48).2	CpG-3824	-28266	NM_002458	727897		NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
28444	chr10	48804651	48805150	+	0	NA	intron (NM_001370153, intron 25 of 28)	intron (NM_001370153, intron 25 of 28)	119437	NM_020945	57705		NM_020945	ENSG00000128815	WDFY4	C10orf64	WDFY family member 4	protein-coding
174981	chr4	49644521	49645230	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	658233	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
37067	chr11	12376521	12376780	+	0	NA	promoter-TSS (NM_018222)	promoter-TSS (NM_018222)	-921	NM_018222	55742		NM_018222	ENSG00000197702	PARVA	CH-ILKBP|MXRA2	parvin alpha	protein-coding
165541	chr3	100761121	100761430	+	0	NA	intron (NM_001349329, intron 60 of 64)	intron (NM_001349329, intron 60 of 64)	51733	NM_001195478	10342		NM_006070	ENSG00000114354	TFG	HMSNP|SPG57|TF6|TRKT3	trafficking from ER to golgi regulator	protein-coding
61198	chr13	49371771	49372580	+	0	NA	intron (NM_001079670, intron 5 of 10)	intron (NM_001079670, intron 5 of 10)	29367	NM_030925	81617		NM_030925	ENSG00000102547	CAB39L	MLAA-34|MO25-BETA|MO2L|bA103J18.3	calcium binding protein 39 like	protein-coding
100105	chr17	58325651	58326500	+	0	NA	intron (NR_038410, intron 1 of 4)	intron (NR_038410, intron 1 of 4)	625	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
179649	chr4	189234951	189235250	+	0	NA	Intergenic	Intergenic	-424506	NR_121679	101928971		NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA
67540	chr14	71130621	71131050	+	0	NA	Intergenic	MER41B|LTR|ERV1	-189641	NM_001354289	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
146948	chr20	52142851	52142950	+	0	NA	intron (NM_199427, intron 5 of 8)	Tigger1|DNA|TcMar-Tigger	-37416	NM_001319146	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
14684	chr1	145855621	145855950	+	0	NA	exon (NM_006099, exon 5 of 14)	exon (NM_006099, exon 5 of 14)	3296	NM_006099	10401		NM_006099	ENSG00000131788	PIAS3	ZMIZ5	protein inhibitor of activated STAT 3	protein-coding
189494	chr5	173228721	173229050	+	0	NA	Intergenic	CpG	6321	NM_001166176	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
132869	chr2	111116971	111118470	+	0	NA	exon (NM_001142807, exon 18 of 18)	exon (NM_001142807, exon 18 of 18)	-2132	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
202867	chr6	159852921	159853180	+	0	NA	Intergenic	Intergenic	-37938	NM_002377	4142		NM_002377	ENSG00000130368	MAS1	MAS|MGRA	MAS1 proto-oncogene, G protein-coupled receptor	protein-coding
154022	chr22	30439551	30440450	+	0	NA	Intergenic	Intergenic	7314	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
2995	chr1	12031221	12031500	+	0	NA	exon (NM_021933, exon 9 of 10)	exon (NM_021933, exon 9 of 10)	2202	NR_106787	102466982		NR_106787	ENSG00000276869	MIR6729	hsa-mir-6729	microRNA 6729	ncRNA
181308	chr5	40275971	40276130	+	0	NA	Intergenic	Intergenic	223759	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
196176	chr6	42580421	42581030	+	0	NA	intron (NM_001363705, intron 2 of 46)	AluSx3|SINE|Alu	16696	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
238698	chrX	154082351	154082650	+	0	NA	intron (NM_001316337, intron 2 of 4)	AluSx1|SINE|Alu	14469	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
231495	chr9	131392751	131394600	+	0	NA	promoter-TSS (NM_001384818)	promoter-TSS (NM_001384818)	-411	NM_001384821	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
93421	chr17	18426221	18427200	+	0	NA	promoter-TSS (NR_146075)	promoter-TSS (NR_146075)	-151	NR_146075	339241		NR_146075		KRT17P2	-	keratin 17 pseudogene 2	pseudo
190555	chr5	180798921	180799430	+	0	NA	intron (NR_157150, intron 1 of 1)	L2|LINE|L2	3631	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
180291	chr5	3445871	3446330	+	0	NA	intron (NR_033898, intron 2 of 4)	intron (NR_033898, intron 2 of 4)	-6716	NR_147000	105374624		NR_147000	ENSG00000249830	LINC02162	-	long intergenic non-protein coding RNA 2162	ncRNA
5447	chr1	25610171	25610330	+	0	NA	Intergenic	Intergenic	-6541	NM_020379	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
112298	chr19	5864771	5865480	+	0	NA	TTS (NM_002034)	TTS (NM_002034)	5415	NM_002034	2527		NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding
152218	chr22	20136021	20136550	+	0	NA	intron (NM_001185024, intron 1 of 10)	intron (NM_001185024, intron 1 of 10)	4481	NM_013373	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
73312	chr15	41894571	41895600	+	0	NA	TTS (NM_139265)	TTS (NM_139265)	-1032	NM_016642	51332		NM_016642	ENSG00000137877	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin beta, non-erythrocytic 5	protein-coding
108800	chr18	78238471	78238730	+	0	NA	Intergenic	(GTGTGTG)n|Simple_repeat|Simple_repeat	-244873	NR_104127	101927715		NR_104127	ENSG00000265843	LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
4761	chr1	23524671	23525340	+	0	NA	intron (NM_004091, intron 1 of 6)	intron (NM_004091, intron 1 of 6)	3075	NR_110799	101928163		NR_110799		LOC101928163	-	uncharacterized LOC101928163	ncRNA
114130	chr19	11205001	11205200	+	0	NA	intron (NM_020812, intron 39 of 47)	intron (NM_020812, intron 39 of 47)	1472	NR_134909	105372273		NR_134909	ENSG00000267082	DOCK6-AS1	-	DOCK6 antisense RNA 1	ncRNA
136394	chr2	176131501	176131700	+	0	NA	exon (NM_001199747, exon 3 of 3)	exon (NM_001199747, exon 3 of 3)	1895	NM_001199747	3234		NM_019558	ENSG00000175879	HOXD8	HOX4|HOX4E|HOX5.4	homeobox D8	protein-coding
149105	chr21	17454371	17454850	+	0	NA	Intergenic	Intergenic	15720	NR_037585	100505929		NM_001005521		LINC01549	C21orf37	long intergenic non-protein coding RNA 1549	ncRNA
214636	chr7	150743401	150743600	+	0	NA	3' UTR (NM_001199577, exon 6 of 6)	3' UTR (NM_001199577, exon 6 of 6)	6152	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
73588	chr15	44534071	44534550	+	0	NA	TTS (NR_034171)	TTS (NR_034171)	2590	NR_034171	645212		NR_034170	ENSG00000179523	EIF3J-DT	EIF3J-AS1	EIF3J divergent transcript	ncRNA
52107	chr12	54175421	54175680	+	0	NA	Intergenic	Intergenic	13407	NM_001351257	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
20467	chr1	198610721	198611380	+	0	NA	Intergenic	Intergenic	-27918	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
169224	chr3	157127721	157129000	+	0	NA	Intergenic	Intergenic	-5358	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
172492	chr4	2246051	2246150	+	0	NA	Intergenic	Intergenic	-3979	NM_024511	79441		NM_024511	ENSG00000214367	HAUS3	C4orf15|IT1|dgt3	HAUS augmin like complex subunit 3	protein-coding
32824	chr10	109979251	109979350	+	0	NA	intron (NR_038943, intron 2 of 4)	intron (NR_038943, intron 2 of 4)	-17073	NM_001320591	120		NM_001121	ENSG00000148700	ADD3	ADDL|CPSQ3	adducin 3	protein-coding
168934	chr3	152362251	152362750	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-21510	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
237303	chrX	115876751	115877600	+	0	NA	intron (NR_147172, intron 2 of 2)	CpG	36211	NR_147172	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
126020	chr2	25336601	25336800	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	5225	NM_022552	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
189006	chr5	168528601	168528880	+	0	NA	promoter-TSS (NM_001355274)	promoter-TSS (NM_001355274)	-565	NM_001355274	345630		NM_001355274	ENSG00000188573	FBLL1	-	fibrillarin like 1	protein-coding
106688	chr18	23261101	23261300	+	0	NA	TTS (NM_001100619)	TTS (NM_001100619)	105375	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
138313	chr2	203743971	203744130	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	37411	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123513	chr19	54216301	54217230	+	0	NA	non-coding (NR_135494, exon 12 of 12).2	non-coding (NR_135494, exon 12 of 12).2	6242	NR_135494	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
52309	chr12	54853921	54854250	+	0	NA	promoter-TSS (NM_058173)	promoter-TSS (NM_058173)	-431	NM_058173	118430		NM_058173	ENSG00000172551	MUCL1	SBEM	mucin like 1	protein-coding
201314	chr6	144362251	144362650	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	-43205	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
190632	chr5	181208651	181209130	+	0	NA	Intergenic	AluY|SINE|Alu	-3694	NM_203293	81786		NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
188467	chr5	154653801	154654350	+	0	NA	Intergenic	Intergenic	-28904	NM_001367715	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
117036	chr19	18928851	18930230	+	0	NA	TTS (NR_033677)	TTS (NR_033677)	9509	NM_001145724	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
184299	chr5	96872151	96872450	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3639	NM_001329229	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
80576	chr16	2865251	2865550	+	0	NA	Intergenic	MamRep38|DNA|hAT	-7230	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
70009	chr14	100074771	100075350	+	0	NA	intron (NM_016337, intron 1 of 13)	intron (NM_016337, intron 1 of 13)	9638	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
207810	chr7	50304801	50305800	+	0	NA	intron (NM_006060, intron 1 of 7)	intron (NM_006060, intron 1 of 7)	584	NM_001291846	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
36535	chr11	6531071	6531600	+	0	NA	intron (NM_144666, intron 12 of 42)	L2b|LINE|L2	34055	NM_173589	144132		NM_144666	ENSG00000179532	DNHD1	C11orf47|CCDC35|DHCD1|DNHD1L|SPGF65	dynein heavy chain domain 1	protein-coding
233475	chr9	137757521	137758000	+	0	NA	intron (NM_024757, intron 8 of 26)	intron (NM_024757, intron 8 of 26)	30646	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
199526	chr6	118725871	118726730	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-16225	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
86647	chr16	67454371	67454730	+	0	NA	intron (NM_004691, intron 1 of 7)	(T)n|Simple_repeat|Simple_repeat	23429	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
208384	chr7	66678351	66678700	+	0	NA	intron (NM_001367722, intron 1 of 7)	AluY|SINE|Alu	-3641	NM_001367740	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
106415	chr18	13512071	13512430	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	52303	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
131383	chr2	96252551	96252850	+	0	NA	3' UTR (NM_001193304, exon 4 of 4)	3' UTR (NM_001193304, exon 4 of 4)	13297	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
127356	chr2	39140651	39140950	+	0	NA	Intergenic	MIRc|SINE|MIR	-15932	NM_001382394	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
10707	chr1	75616901	75617100	+	0	NA	promoter-TSS (NM_001320283)	promoter-TSS (NM_001320283)	-837	NM_001320283	204962		NM_152697	ENSG00000137968	SLC44A5	CTL5	solute carrier family 44 member 5	protein-coding
155117	chr22	37624751	37625550	+	0	NA	intron (NM_001172688, intron 11 of 17)	intron (NM_001172688, intron 11 of 17)	-14519	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
115197	chr19	14468801	14469400	+	0	NA	intron (NM_002741, intron 15 of 21)	intron (NM_002741, intron 15 of 21)	6254	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
31848	chr10	99766171	99766630	+	0	NA	Intergenic	MIR|SINE|MIR	-16240	NM_000392	1244		NM_000392	ENSG00000023839	ABCC2	ABC30|CMOAT|DJS|MRP2|cMRP	ATP binding cassette subfamily C member 2	protein-coding
78181	chr15	90544921	90545450	+	0	NA	intron (NM_001042574, intron 2 of 14)	L1MB2|LINE|L1	15262	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
215947	chr8	8347571	8348230	+	0	NA	intron (NM_001369759, intron 3 of 5)	AluSz6|SINE|Alu	38344	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
170989	chr3	194637151	194637650	+	0	NA	Intergenic	Intergenic	-3981	NM_138399	93109		NM_138399	ENSG00000145014	TMEM44	-	transmembrane protein 44	protein-coding
58711	chr12	132570271	132570850	+	0	NA	intron (NM_001382740, intron 8 of 11)	CpG-6361	-11437	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
96330	chr17	40026921	40028830	+	0	NA	promoter-TSS (NR_102369)	promoter-TSS (NR_102369)	-230	NR_102369	101340251		NR_102369	ENSG00000238793	SNORD124	-	small nucleolar RNA, C/D box 124	snoRNA
84763	chr16	30980351	30980850	+	0	NA	exon (NM_014712, exon 15 of 19)	exon (NM_014712, exon 15 of 19)	-4607	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
85488	chr16	50731271	50731850	+	0	NA	intron (NR_163434, intron 12 of 12)	intron (NR_163434, intron 12 of 12)	-10526	NM_001378744	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
223885	chr9	275101	275330	+	0	NA	intron (NM_001193536, intron 1 of 46)	intron (NM_001193536, intron 1 of 46)	2167	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
103778	chr17	79003771	79003930	+	0	NA	intron (NM_001159772, intron 1 of 5)	intron (NM_001159772, intron 1 of 5)	5914	NM_001159772	124583		NM_138793	ENSG00000171302	CANT1	DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
82222	chr16	15023621	15024280	+	0	NA	intron (NM_001324019, intron 13 of 22)	intron (NM_001324019, intron 13 of 22)	-13553	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
164429	chr3	59051871	59052030	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1918	NM_001351534	200844		NM_198463	ENSG00000163689	CFAP20DC	C3orf67	CFAP20 domain containing	protein-coding
78888	chr15	100880371	100880530	+	0	NA	intron (NM_001293815, intron 1 of 9)	CpG	619	NM_001293815	220		NM_000693	ENSG00000184254	ALDH1A3	ALDH1A6|ALDH6|MCOP8|RALDH3	aldehyde dehydrogenase 1 family member A3	protein-coding
225125	chr9	33509901	33510100	+	0	NA	intron (NR_003667, intron 2 of 6)	AluSq|SINE|Alu	1166	NR_003667	441394		NM_001007550		SUGT1P1	SGT1P|SUGT1P|bA255A11.1	SUGT1 pseudogene 1	pseudo
202361	chr6	157760901	157761900	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-61846	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
233562	chrX	280001	280650	+	0	NA	intron (NM_001370371, intron 1 of 6)	intron (NM_001370371, intron 1 of 6)	-1056	NR_163416	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228362	chr9	99069071	99069600	+	0	NA	intron (NM_001855, intron 41 of 41)	L2c|LINE|L2	-35778	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
46384	chr11	126284751	126285450	+	0	NA	intron (NM_001318776, intron 1 of 3)	L1ME3A|LINE|L1	2013	NM_001039661	114609		NM_052887	ENSG00000150455	TIRAP	BACTS1|Mal|MyD88-2|wyatt	TIR domain containing adaptor protein	protein-coding
197931	chr6	89810001	89810400	+	0	NA	intron (NM_014611, intron 1 of 101)	AluSx1|SINE|Alu	9594	NM_014611	23195		NM_014611	ENSG00000112159	MDN1	Rea1	midasin AAA ATPase 1	protein-coding
31141	chr10	89738871	89739100	+	0	NA	non-coding (NR_168374, exon 20 of 32)	non-coding (NR_168374, exon 20 of 32)	37395	NM_001284259	9585		NM_016195	ENSG00000138182	KIF20B	CT90|KRMP1|MPHOSPH1|MPP-1|MPP1	kinesin family member 20B	protein-coding
133251	chr2	113297621	113297880	+	0	NA	Intergenic	Intergenic	-18829	NM_003466	7849		NM_003466	ENSG00000125618	PAX8	PAX-8	paired box 8	protein-coding
35149	chr11	730751	731050	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16564	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
236718	chrX	78065001	78065200	+	0	NA	Intergenic	Intergenic	-39148	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
211165	chr7	102581371	102581950	+	0	NA	3' UTR (NM_006989, exon 21 of 21)	3' UTR (NM_006989, exon 21 of 21)	-9039	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
74909	chr15	63615301	63615500	+	0	NA	intron (NM_003922, intron 76 of 77)	AluSz6|SINE|Alu	-14573	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
34176	chr10	128102801	128103880	+	0	NA	exon (NM_002417, exon 13 of 15)	exon (NM_002417, exon 13 of 15)	23083	NM_002417	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
23217	chr1	227727551	227727650	+	0	NA	promoter-TSS (NM_001323930)	promoter-TSS (NM_001323930)	-568	NM_001323933	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
134731	chr2	144581651	144582180	+	0	NA	Intergenic	Intergenic	-57471	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
208230	chr7	65378071	65378630	+	0	NA	intron (NM_001287534, intron 1 of 1)	MER92B|LTR|ERV1	4495	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
209920	chr7	92446501	92447700	+	0	NA	promoter-TSS (NM_021167)	promoter-TSS (NM_021167)	-382	NR_052016	57798		NM_021167	ENSG00000157259	GATAD1	CMD2B|ODAG|RG083M05.2	GATA zinc finger domain containing 1	protein-coding
235208	chrX	41357051	41357150	+	0	NA	intron (NR_126093, intron 17 of 18)	AluSx|SINE|Alu	22934	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
151480	chr21	46255771	46256130	+	0	NA	intron (NM_003906, intron 17 of 27)	intron (NM_003906, intron 17 of 27)	26719	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
183991	chr5	90408971	90410330	+	0	NA	promoter-TSS (NR_105024)	promoter-TSS (NR_105024)	106	NM_004365	1070		NM_004365	ENSG00000153140	CETN3	CDC31|CEN3	centrin 3	protein-coding
137535	chr2	197214651	197215230	+	0	NA	intron (NM_153697, intron 1 of 9)	AluSz6|SINE|Alu	16949	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
101284	chr17	66398351	66398450	+	0	NA	intron (NR_110822, intron 3 of 3)	intron (NR_110822, intron 3 of 3)	18454	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
238283	chrX	149475771	149476980	+	0	NA	TTS (NM_000202)	TTS (NM_000202)	28931	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
27630	chr10	32947071	32947550	+	0	NA	intron (NM_002211, intron 1 of 15)	L2|LINE|L2	10584	NM_133376	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
172985	chr4	4161371	4161550	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	65469	NM_177998	133060		NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
40935	chr11	65281071	65281230	+	0	NA	intron (NM_002689, intron 8 of 17)	intron (NM_002689, intron 8 of 17)	19188	NM_002689	23649		NM_002689	ENSG00000014138	POLA2	-	DNA polymerase alpha 2, accessory subunit	protein-coding
178854	chr4	154018751	154018850	+	0	NA	Intergenic	Intergenic	-229717	NM_003013	6423		NM_003013	ENSG00000145423	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled related protein 2	protein-coding
185160	chr5	119334721	119335450	+	0	NA	intron (NM_001286814, intron 1 of 1)	intron (NM_001286814, intron 1 of 1)	1910	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
148411	chr20	63946501	63946700	+	0	NA	exon (NM_001353476, exon 2 of 15)	exon (NM_001353476, exon 2 of 15)	-3874	NR_030377	693232		NR_030377	ENSG00000207554	MIR647	MIRN647|hsa-mir-647	microRNA 647	ncRNA
91053	chr17	2940621	2940880	+	0	NA	intron (NM_001100398, intron 3 of 23)	intron (NM_001100398, intron 3 of 23)	25145	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
118761	chr19	38376371	38376530	+	0	NA	exon (NM_002812, exon 3 of 7)	exon (NM_002812, exon 3 of 7)	1879	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
112683	chr19	7041351	7042080	+	0	NA	Intergenic	L1MEg|LINE|L1	-1542	NM_001164419	653656		NM_001164419	ENSG00000205718	MBD3L4	-	methyl-CpG binding domain protein 3 like 4	protein-coding
238912	chrX	154719051	154719700	+	0	NA	intron (NR_104114, intron 1 of 8)	L2c|LINE|L2	31702	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
234052	chrX	6932671	6933130	+	0	NA	Intergenic	L1PA2|LINE|L1	-214390	NM_001320750	412		NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase	protein-coding
210706	chr7	100581571	100582280	+	0	NA	intron (NM_001289934, intron 3 of 17)	intron (NM_001289934, intron 3 of 17)	4204	NM_002319	4034		NM_002319	ENSG00000077454	LRCH4	LRN|LRRN1|LRRN4|PP14183	leucine rich repeats and calponin homology domain containing 4	protein-coding
9017	chr1	44728471	44729630	+	0	NA	Intergenic	AluY|SINE|Alu	2118	NR_002755	26830		NR_002755	ENSG00000200169	RNU5D-1	RNU5D|U5DL|U5DS	RNA, U5D small nuclear 1	snRNA
18893	chr1	168234871	168235650	+	0	NA	intron (NM_199344, intron 4 of 7)	intron (NM_199344, intron 4 of 7)	9256	NM_199344	375035		NM_199344	ENSG00000213064	SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding
93509	chr17	19001551	19002330	+	0	NA	intron (NM_001039999, intron 2 of 5)	MIR3|SINE|MIR	2824	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
188838	chr5	159120071	159120930	+	0	NA	Intergenic	L1ME3B|LINE|L1	20017	NR_109890	101927740		NR_109890	ENSG00000245812	LINC02202	-	long intergenic non-protein coding RNA 2202	ncRNA
231213	chr9	129955721	129955980	+	0	NA	intron (NM_001363755, intron 6 of 15)	(CA)n|Simple_repeat|Simple_repeat	86245	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
18922	chr1	168439251	168440090	+	0	NA	Intergenic	MIR3|SINE|MIR	-17014	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
108214	chr18	63158951	63159280	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	160654	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
118490	chr19	35935951	35936750	+	0	NA	promoter-TSS (NM_024509)	promoter-TSS (NM_024509)	-24	NM_024509	79414		NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
158410	chr22	50529501	50530500	+	0	NA	promoter-TSS (NM_001113756)	promoter-TSS (NM_001113756)	12	NM_001113755	1890		NM_001953	ENSG00000025708	TYMP	ECGF|ECGF1|MEDPS1|MNGIE|MTDPS1|PDECGF|TP|hPD-ECGF	thymidine phosphorylase	protein-coding
4996	chr1	24344921	24345180	+	0	NA	intron (NM_198173, intron 12 of 15)	intron (NM_198173, intron 12 of 15)	22010	NM_021180	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
97527	chr17	44003771	44003930	+	0	NA	promoter-TSS (NM_153006)	promoter-TSS (NM_153006)	595	NM_004160	5697		NM_004160	ENSG00000131096	PYY	PYY-I|PYY1	peptide YY	protein-coding
231982	chr9	133273201	133274080	+	0	NA	intron (NM_020469, intron 1 of 6)	intron (NM_020469, intron 1 of 6)	1561	NM_020469	28		NM_020469	ENSG00000175164	ABO	A3GALNT|A3GALT1|GTB|NAGAT	ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase	protein-coding
165325	chr3	88016301	88016530	+	0	NA	Intergenic	LTR12C|LTR|ERV1	33839	NM_000866	3355		NM_000866	ENSG00000179097	HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	5-hydroxytryptamine receptor 1F	protein-coding
141481	chr2	241083151	241083650	+	0	NA	intron (NM_001080437, intron 29 of 31)	L2a|LINE|L2	18887	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
168162	chr3	139391271	139391500	+	0	NA	intron (NR_121609, intron 1 of 4)	intron (NR_121609, intron 1 of 4)	1582	NR_121608	100507291		NR_121608	ENSG00000248932	COPB2-DT	-	COPB2 divergent transcript	ncRNA
145863	chr20	45914021	45914280	+	0	NA	Intergenic	AluJb|SINE|Alu	-1786	NM_182676	5360		NM_006227	ENSG00000100979	PLTP	BPIFE|HDLCQ9	phospholipid transfer protein	protein-coding
112784	chr19	7476271	7476700	+	0	NA	TTS (NM_001270539)	TTS (NM_001270539)	12550	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
196149	chr6	42446701	42447300	+	0	NA	intron (NM_033502, intron 2 of 17)	AluSz|SINE|Alu	5051	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
101330	chr17	66713171	66714580	+	0	NA	intron (NM_002737, intron 8 of 16)	intron (NM_002737, intron 8 of 16)	-73197	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
208017	chr7	55568201	55568400	+	0	NA	intron (NM_001321244, intron 1 of 5)	AluY|SINE|Alu	3568	NM_001321250	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
167900	chr3	136154501	136154900	+	0	NA	intron (NM_018133, intron 1 of 1)	L1MB7|LINE|L1	39768	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
44035	chr11	95147301	95147930	+	0	NA	Intergenic	Intergenic	-2924	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
134959	chr2	151947201	151947800	+	0	NA	intron (NM_000726, intron 2 of 13)	MER5A|DNA|hAT-Charlie	24552	NM_001330118	785		NM_000726	ENSG00000182389	CACNB4	CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6	calcium voltage-gated channel auxiliary subunit beta 4	protein-coding
204957	chr7	6358721	6359350	+	0	NA	Intergenic	Intergenic	-10068	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
138019	chr2	201275871	201276980	+	0	NA	intron (NM_001228, intron 7 of 9)	intron (NM_001228, intron 7 of 9)	15889	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
53246	chr12	62581751	62582050	+	0	NA	intron (NM_001278472, intron 33 of 35)	intron (NM_001278472, intron 33 of 35)	21534	NR_121682	283416		NM_175895	ENSG00000221949	LINC01465	C12orf61	long intergenic non-protein coding RNA 1465	ncRNA
70663	chr14	103071371	103071530	+	0	NA	Intergenic	Intergenic	-12760	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
197759	chr6	87237771	87238180	+	0	NA	intron (NM_015021, intron 5 of 7)	intron (NM_015021, intron 5 of 7)	82410	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
179676	chr4	190022671	190023430	+	0	NA	Intergenic	CpG	4206	NM_001005217	448831		NM_001005217	ENSG00000205097	FRG2	FRG2A	FSHD region gene 2	protein-coding
121262	chr19	46693251	46693550	+	0	NA	intron (NM_001079881, intron 11 of 18)	MIRb|SINE|MIR	15954	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
170548	chr3	186780921	186781280	+	0	NA	Intergenic	Intergenic	-2477	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
211504	chr7	105266571	105266750	+	0	NA	intron (NM_001350741, intron 2 of 16)	intron (NM_001350741, intron 2 of 16)	2417	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
221551	chr8	124963401	124963550	+	0	NA	Intergenic	AluY|SINE|Alu	-9820	NM_152412	137209		NM_152412	ENSG00000180938	ZNF572	-	zinc finger protein 572	protein-coding
115222	chr19	14499201	14499630	+	0	NA	Intergenic	AluJr|SINE|Alu	-3266	NM_202494	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
9122	chr1	45344301	45344800	+	0	NA	TTS (NM_025077)	TTS (NM_025077)	-4080	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
187218	chr5	140710271	140711550	+	0	NA	promoter-TSS (NR_026703)	promoter-TSS (NR_026703)	-366	NR_026703	56664		NR_026703	ENSG00000199990	VTRNA1-1	HVG1|VAULTRC1|VR1|hvg-1|vRNA	vault RNA 1-1	ncRNA
196092	chr6	42319871	42321100	+	0	NA	intron (NM_033502, intron 3 of 17)	HAL1|LINE|L1	-102624	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
65525	chr14	51910901	51911450	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	7396	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
201087	chr6	142817201	142818200	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	127476	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
131089	chr2	89272621	89273030	+	0	NA	Intergenic	Intergenic	312840	NR_160761	107985911		NR_160761	ENSG00000290846	LOC107985911	-	lymphocyte specific protein 1 pseudogene	pseudo
128963	chr2	64642751	64643480	+	0	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	10798	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
204607	chr7	5355701	5355900	+	0	NA	intron (NM_001080495, intron 16 of 29)	AluJo|SINE|Alu	67746	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
134609	chr2	144382771	144384030	+	0	NA	TTS (NM_001171653)	TTS (NM_001171653)	-50331	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
167650	chr3	129625551	129625800	+	0	NA	Intergenic	Intergenic	-18999	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
16949	chr1	155927671	155927830	+	0	NA	intron (NM_014949, intron 4 of 13)	AluSz6|SINE|Alu	-1664	NR_003005	677771		NR_003005	ENSG00000281394	SCARNA4	ACA26	small Cajal body-specific RNA 4	ncRNA
107834	chr18	54225821	54226280	+	0	NA	Intergenic	AluYh3|SINE|Alu	-1381	NM_003927	8932		NM_003927	ENSG00000134046	MBD2	DMTase|NY-CO-41	methyl-CpG binding domain protein 2	protein-coding
82714	chr16	20878551	20878650	+	0	NA	intron (NM_173475, intron 1 of 2)	intron (NM_173475, intron 1 of 2)	-21282	NM_001369631	57149		NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
175428	chr4	71009501	71010340	+	0	NA	intron (NM_000788, intron 2 of 6)	intron (NM_000788, intron 2 of 6)	16271	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
148597	chr21	5117601	5117900	+	0	NA	intron (NR_135220, intron 5 of 5)	intron (NR_135220, intron 5 of 5)	10619	NM_001363761	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
68132	chr14	75524851	75525550	+	0	NA	intron (NM_006399, intron 2 of 2)	intron (NM_006399, intron 2 of 2)	2731	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
17578	chr1	156844021	156844480	+	0	NA	exon (NM_014215, exon 15 of 22)	exon (NM_014215, exon 15 of 22)	14867	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
40457	chr11	64216701	64217400	+	0	NA	intron (NM_001382363, intron 5 of 13)	HAL1|LINE|L1	8819	NM_001160393	83707		NM_031472	ENSG00000149743	TRPT1	-	tRNA phosphotransferase 1	protein-coding
82675	chr16	19717401	19719130	+	0	NA	promoter-TSS (NM_001348535)	promoter-TSS (NM_001348535)	-38	NM_001348528	400506		NM_001012991	ENSG00000103550	KNOP1	101F10.1|C16orf88|FAM191A|TSG118	lysine rich nucleolar protein 1	protein-coding
232150	chr9	134062401	134062600	+	0	NA	intron (NM_007371, intron 1 of 11)	intron (NM_007371, intron 1 of 11)	5526	NM_007371	8019		NM_007371	ENSG00000169925	BRD3	FSHRG2|ORFX|RING3L	bromodomain containing 3	protein-coding
149282	chr21	26849501	26849700	+	0	NA	Intergenic	Intergenic	-4191	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
132656	chr2	108739721	108739980	+	0	NA	intron (NM_006267, intron 6 of 28)	AluSx3|SINE|Alu	20368	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
191116	chr6	4027671	4027850	+	0	NA	intron (NR_146785, intron 1 of 20)	MIR|SINE|MIR	6460	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
120264	chr19	42566921	42567400	+	0	NA	intron (NR_073180, intron 2 of 2)	AluSc8|SINE|Alu	27764	NM_001816	1088		NM_001816	ENSG00000124469	CEACAM8	CD66b|CD67|CGM6|NCA-95	CEA cell adhesion molecule 8	protein-coding
187120	chr5	140413651	140414150	+	0	NA	intron (NM_020690, intron 1 of 35)	AluSx|SINE|Alu	12067	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
149913	chr21	36146271	36146430	+	0	NA	non-coding (NR_038894, exon 2 of 3)	non-coding (NR_038894, exon 2 of 3)	9958	NR_038893	100506428		NR_038892	ENSG00000236830	CBR3-AS1	PlncRNA-1|PlncRNA1	CBR3 antisense RNA 1	ncRNA
95817	chr17	38748811	38749800	+	0	NA	promoter-TSS (NM_007144)	promoter-TSS (NM_007144)	271	NR_149004	100287808		NR_149004	ENSG00000277182	LOC100287808	-	uncharacterized LOC100287808	ncRNA
218256	chr8	42170771	42170950	+	0	NA	3' UTR (NM_001134296, exon 10 of 10)	3' UTR (NM_001134296, exon 10 of 10)	17797	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
123132	chr19	52022871	52023030	+	0	NA	intron (NM_025040, intron 2 of 4)	AluYh3|SINE|Alu	5429	NM_025040	80110		NM_025040	ENSG00000142556	ZNF614	-	zinc finger protein 614	protein-coding
210502	chr7	100178851	100178950	+	0	NA	intron (NM_012447, intron 1 of 33)	AluJo|SINE|Alu	982	NM_001282718	10734		NM_012447	ENSG00000066923	STAG3	SA3|SPGF61	STAG3 cohesin complex component	protein-coding
198186	chr6	96542771	96543000	+	0	NA	intron (NM_015323, intron 11 of 18)	intron (NM_015323, intron 11 of 18)	-19640	NM_001170807	9457		NM_020482	ENSG00000112214	FHL5	1700027G07Rik|ACT|FHL-5|dJ393D12.2	four and a half LIM domains 5	protein-coding
167365	chr3	128780321	128780580	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	54267	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
178030	chr4	139525371	139525750	+	0	NA	intron (NM_030648, intron 4 of 7)	intron (NM_030648, intron 4 of 7)	31209	NM_030648	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
164204	chr3	56877751	56879300	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	37911	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
60713	chr13	44140351	44140730	+	0	NA	intron (NR_132368, intron 1 of 3)	MER1A|DNA|hAT-Charlie	-1788	NR_104064	101929212		NR_104064	ENSG00000227258	SMIM2-AS1	C13orf44-AS1|C3orf81-AS1	SMIM2 antisense RNA 1	ncRNA
39583	chr11	61187321	61187800	+	0	NA	Intergenic	Intergenic	-15955	NM_001079807	643834		NM_001079807	ENSG00000229859	PGA3	-	pepsinogen A3	protein-coding
132906	chr2	111410351	111410850	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	84561	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
233798	chrX	1449801	1450000	+	0	NA	intron (NM_001173473, intron 1 of 12).2	intron (NM_001173473, intron 1 of 12).2	3009	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
144125	chr20	34000501	34000780	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-6273	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
10219	chr1	62450301	62450700	+	0	NA	exon (NM_001017415, exon 9 of 9)	exon (NM_001017415, exon 9 of 9)	13451	NM_003368	7398		NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
205745	chr7	23503001	23503450	+	0	NA	Intergenic	AluSq2|SINE|Alu	12837	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
74672	chr15	62045851	62046650	+	0	NA	intron (NM_017684, intron 1 of 82)	intron (NM_017684, intron 1 of 82)	14197	NM_017684	54832		NM_017684	ENSG00000129003	VPS13C	BLTP5C|PARK23	vacuolar protein sorting 13 homolog C	protein-coding
100282	chr17	59695521	59695780	+	0	NA	3' UTR (NM_001288653, exon 32 of 32)	3' UTR (NM_001288653, exon 32 of 32)	11780	NM_016077	51651		NM_016077	ENSG00000141378	PTRH2	BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2	peptidyl-tRNA hydrolase 2	protein-coding
130528	chr2	85628421	85629080	+	0	NA	intron (NR_046347, intron 5 of 12)	intron (NR_046347, intron 5 of 12)	12564	NM_001256725	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
182573	chr5	65957201	65957400	+	0	NA	intron (NM_001253697, intron 1 of 25)	SVA_C|Retroposon|SVA	-11727	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
117262	chr19	19455221	19455680	+	0	NA	intron (NM_001384516, intron 2 of 12)	AluSx|SINE|Alu	20387	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
107050	chr18	32139671	32140300	+	0	NA	Intergenic	LTR12C|LTR|ERV1	47379	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
196238	chr6	42879101	42880430	+	0	NA	non-coding (NR_134563, exon 1 of 6)	non-coding (NR_134563, exon 1 of 6)	149	NM_001366481	285855		NM_198486	ENSG00000146223	RPL7L1	dJ475N16.4	ribosomal protein L7 like 1	protein-coding
67815	chr14	73785501	73786400	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	1258	NM_001043318	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
227504	chr9	91253521	91253980	+	0	NA	intron (NM_001351432, intron 7 of 10)	intron (NM_001351432, intron 7 of 10)	108168	NM_001698	549		NM_001698	ENSG00000148090	AUH	-	AU RNA binding methylglutaconyl-CoA hydratase	protein-coding
202848	chr6	159764051	159764730	+	0	NA	intron (NM_001303253, intron 2 of 8)	intron (NM_001303253, intron 2 of 8)	1911	NM_001303253	39		NM_005891	ENSG00000120437	ACAT2	-	acetyl-CoA acetyltransferase 2	protein-coding
217551	chr8	29343221	29343980	+	0	NA	intron (NM_001394, intron 1 of 3)	intron (NM_001394, intron 1 of 3)	5205	NM_057158	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
163933	chr3	52696701	52696900	+	0	NA	intron (NM_001278280, intron 5 of 10)	MIRc|SINE|MIR	4064	NR_003057	692109		NR_003057	ENSG00000212452	SNORD69	HBII-210	small nucleolar RNA, C/D box 69	snoRNA
20294	chr1	197144651	197145280	+	0	NA	intron (NM_018136, intron 1 of 27)	intron (NM_018136, intron 1 of 27)	1704	NM_018136	259266		NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	assembly factor for spindle microtubules	protein-coding
45080	chr11	117072301	117073050	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	25753	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
146967	chr20	52493451	52493780	+	0	NA	Intergenic	Intergenic	-127223	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
126593	chr2	28769971	28770480	+	0	NA	intron (NM_206876, intron 2 of 8)	AluSz|SINE|Alu	18395	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
100913	chr17	64461471	64461830	+	0	NA	intron (NM_001085423, intron 5 of 9)	L1MB3|LINE|L1	12535	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
129790	chr2	71299301	71299730	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-32240	NM_001014972	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
147823	chr20	62721601	62722000	+	0	NA	intron (NM_002531, intron 1 of 3)	L1MEf|LINE|L1	12964	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
2840	chr1	11101471	11101700	+	0	NA	intron (NR_135063, intron 1 of 1)	L2c|LINE|L2	1566	NR_135063	105376736		NR_135061	ENSG00000230337	EXOSC10-AS1	-	EXOSC10 antisense RNA 1	ncRNA
52601	chr12	56220401	56222700	+	0	NA	intron (NM_194359, intron 1 of 6)	intron (NM_194359, intron 1 of 6)	151	NM_001242826	10193		NM_005785	ENSG00000181852	RNF41	FLRF|NRDP1|SBBI03	ring finger protein 41	protein-coding
27727	chr10	34815251	34815750	+	0	NA	promoter-TSS (NM_001184787)	promoter-TSS (NM_001184787)	-175	NM_001184792	56288		NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding
159002	chr3	10344151	10344780	+	0	NA	intron (NM_001353564, intron 16 of 20)	intron (NM_001353564, intron 16 of 20)	14236	NR_036084	100422933		NR_036084	ENSG00000264534	MIR378B	-	microRNA 378b	ncRNA
95034	chr17	32491471	32492430	+	0	NA	TTS (NM_015194)	TTS (NM_015194)	4957	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
177468	chr4	113735271	113735630	+	0	NA	intron (NM_001321585, intron 2 of 19)	AluSz|SINE|Alu	26288	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
135448	chr2	161233071	161233430	+	0	NA	intron (NM_004180, intron 7 of 7)	AluJr|SINE|Alu	-11489	NR_110164	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
184277	chr5	96771371	96772050	+	0	NA	intron (NM_001375317, intron 30 of 30)	intron (NM_001375317, intron 30 of 30)	28108	NR_104285	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
129461	chr2	69570001	69570530	+	0	NA	intron (NM_001371577, intron 2 of 14)	L2c|LINE|L2	-50094	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
115179	chr19	14432831	14434480	+	0	NA	intron (NM_002741, intron 1 of 21)	CpG	349	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
23709	chr1	231667971	231668330	+	0	NA	intron (NM_001164556, intron 1 of 4)	L1MA10|LINE|L1	41335	NM_001164555	27185		NM_018662	ENSG00000162946	DISC1	C1orf136|SCZD9	DISC1 scaffold protein	protein-coding
43686	chr11	85823421	85825030	+	0	NA	Intergenic	Intergenic	-13066	NM_001289608	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
230984	chr9	129485501	129486430	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2695	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
220067	chr8	93915771	93917200	+	0	NA	promoter-TSS (NM_018444)	promoter-TSS (NM_018444)	-366	NR_039602	100616169		NR_039602	ENSG00000284288	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
106326	chr18	12945551	12945850	+	0	NA	Intergenic	AluJb|SINE|Alu	-2284	NM_031216	81929		NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
76603	chr15	75366351	75366780	+	0	NA	exon (NM_006715, exon 4 of 26)	exon (NM_006715, exon 4 of 26)	2042	NM_006715	4123		NM_006715	ENSG00000140400	MAN2C1	CDDG2|MAN6A8|MANA|MANA1	mannosidase alpha class 2C member 1	protein-coding
81114	chr16	4377001	4377400	+	0	NA	intron (NM_138440, intron 1 of 1)	intron (NM_138440, intron 1 of 1)	5352	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
103495	chr17	78384171	78384930	+	0	NA	intron (NR_111989, intron 1 of 8)	intron (NR_111989, intron 1 of 8)	5901	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
191733	chr6	13709551	13710500	+	0	NA	intron (NM_005493, intron 1 of 13)	intron (NM_005493, intron 1 of 13)	1810	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
76069	chr15	72375471	72376630	+	0	NA	promoter-TSS (NR_027262)	promoter-TSS (NR_027262)	-36	NM_001318825	3073		NM_000520	ENSG00000213614	HEXA	TSD	hexosaminidase subunit alpha	protein-coding
79628	chr16	1125221	1126130	+	0	NA	Intergenic	Intergenic	-27431	NM_021098	8912		NM_021098	ENSG00000196557	CACNA1H	CACNA1HB|Cav3.2|ECA6|EIG6|HALD4	calcium voltage-gated channel subunit alpha1 H	protein-coding
224863	chr9	31210301	31210900	+	0	NA	Intergenic	MamRep1527|LTR|LTR	170890	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
178217	chr4	142645501	142645750	+	0	NA	intron (NM_001385336, intron 2 of 26)	MLT1J|LTR|ERVL-MaLR	-84870	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
182240	chr5	57117151	57118050	+	0	NA	Intergenic	Intergenic	-56348	NM_001203246	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
16767	chr1	155379751	155379930	+	0	NA	intron (NM_018489, intron 8 of 27)	intron (NM_018489, intron 8 of 27)	-33395	NR_030282	693140		NR_030282	ENSG00000283701	MIR555	MIRN555|hsa-mir-555	microRNA 555	ncRNA
1526	chr1	3069501	3069800	+	0	NA	intron (NM_199454, intron 1 of 16)	CpG	447	NM_199454	63976		NM_022114	ENSG00000142611	PRDM16	CMD1LL|KMT8F|LVNC8|MEL1|PFM13	PR/SET domain 16	protein-coding
92208	chr17	7855921	7856300	+	0	NA	TTS (NM_001320925)	TTS (NM_001320925)	1044	NM_001319941	92162		NM_203411	ENSG00000167874	TMEM88	-	transmembrane protein 88	protein-coding
74225	chr15	56468421	56468750	+	0	NA	Intergenic	Intergenic	-3448	NM_018365	55329		NM_018365	ENSG00000138587	MNS1	HTX9|SPATA40	meiosis specific nuclear structural 1	protein-coding
177496	chr4	114180571	114180830	+	0	NA	Intergenic	Intergenic	-201053	NM_024590	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
213235	chr7	133824251	133824350	+	0	NA	intron (NR_120513, intron 1 of 3)	intron (NR_120513, intron 1 of 3)	588	NR_120513	101928861		NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
193012	chr6	28264021	28264280	+	0	NA	Intergenic	Intergenic	-2860	NM_001111039	7741		NM_007151	ENSG00000197062	ZSCAN26	SRE-ZBP|SREZBP|ZNF187	zinc finger and SCAN domain containing 26	protein-coding
143642	chr20	31851401	31851800	+	0	NA	intron (NM_001320479, intron 6 of 9)	intron (NM_001320479, intron 6 of 9)	-5996	NM_004118	2307		NM_004118	ENSG00000179772	FOXS1	FKHL18|FREAC10	forkhead box S1	protein-coding
111356	chr19	3672871	3673530	+	0	NA	intron (NM_001300849, intron 1 of 16)	L2b|LINE|L2	27268	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
27915	chr10	41898701	41899380	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	469005	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
152773	chr22	21785421	21785930	+	0	NA	intron (NM_138957, intron 6 of 7)	AluY|SINE|Alu	-49881	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
40610	chr11	64649371	64649930	+	0	NA	intron (NM_015080, intron 15 of 22)	intron (NM_015080, intron 15 of 22)	-6105	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
3950	chr1	18633821	18634280	+	0	NA	intron (NM_001135254, intron 1 of 8)	intron (NM_001135254, intron 1 of 8)	3204	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
199722	chr6	125745671	125746050	+	0	NA	Intergenic	Intergenic	-3772	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
108857	chr18	79335971	79336130	+	0	NA	intron (NM_198531, intron 17 of 29)	intron (NM_198531, intron 17 of 29)	-59880	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
238859	chrX	154490021	154491600	+	0	NA	promoter-TSS (NM_001142391)	promoter-TSS (NM_001142391)	-181	NM_001142392	8273		NM_019848	ENSG00000126903	SLC10A3	DXS253E|P3	solute carrier family 10 member 3	protein-coding
80772	chr16	3182571	3183450	+	0	NA	Intergenic	CpG	-5194	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
166088	chr3	109336751	109337250	+	0	NA	intron (NM_018189, intron 1 of 6)	AluSp|SINE|Alu	517	NM_001348928	55211		NM_018189	ENSG00000121570	DPPA4	2410091M23Rik	developmental pluripotency associated 4	protein-coding
121036	chr19	45813171	45813730	+	0	NA	intron (NM_030785, intron 1 of 5)	AluSx|SINE|Alu	1858	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
214755	chr7	151065501	151066100	+	0	NA	intron (NM_001199692, intron 5 of 22)	intron (NM_001199692, intron 5 of 22)	3158	NM_001199694	6522		NM_003040	ENSG00000164889	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3|OPTB9	solute carrier family 4 member 2	protein-coding
148579	chr21	5051021	5051300	+	0	NA	Intergenic	Intergenic	28606	NM_001283050	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
34415	chr10	132401871	132402230	+	0	NA	intron (NM_138499, intron 1 of 2)	intron (NM_138499, intron 1 of 2)	4850	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
171287	chr3	195905071	195905480	+	0	NA	intron (NM_005781, intron 1 of 14)	AluSx3|SINE|Alu	-2801	NR_145450	100128262		NR_145450		TNK2-AS1	-	TNK2 antisense RNA 1	ncRNA
32978	chr10	110505601	110506280	+	0	NA	intron (NM_004419, intron 2 of 3)	intron (NM_004419, intron 2 of 3)	8033	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
186911	chr5	139587821	139588430	+	0	NA	intron (NM_181838, intron 2 of 7)	AluJr|SINE|Alu	26786	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
6054	chr1	27134921	27135180	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	20075	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
216843	chr8	22600851	22600950	+	0	NA	exon (NM_001013842, exon 2 of 7)	exon (NM_001013842, exon 2 of 7)	1299	NM_001198827	541565		NM_173686	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
194381	chr6	32987201	32987850	+	0	NA	Intergenic	AluSz6|SINE|Alu	14441	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
49655	chr12	28760651	28760750	+	0	NA	Intergenic	L1PA2|LINE|L1	-388578	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
177837	chr4	127655571	127655750	+	0	NA	intron (NM_015693, intron 2 of 15)	L1PA2|LINE|L1	22703	NM_015693	27152		NM_015693	ENSG00000164066	INTU	CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20	inturned planar cell polarity protein	protein-coding
191634	chr6	13261551	13261650	+	0	NA	intron (NM_030948, intron 10 of 14)	MER45A|DNA|hAT-Tip100	21842	NR_134859	100130357		NM_001242698	ENSG00000215022	LOC100130357	-	uncharacterized LOC100130357	ncRNA
28483	chr10	49649451	49649550	+	0	NA	intron (NM_020984, intron 9 of 14)	intron (NM_020984, intron 9 of 14)	-30151	NM_182554	282966		NM_182554	ENSG00000178645	C10orf53	-	chromosome 10 open reading frame 53	protein-coding
200312	chr6	133569001	133569550	+	0	NA	intron (NR_109982, intron 4 of 8)	intron (NR_109982, intron 4 of 8)	-251872	NR_027030	154089		NM_153224		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
56980	chr12	120551071	120551530	+	0	NA	intron (NM_001330474, intron 2 of 16)	AluSq2|SINE|Alu	16944	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
44258	chr11	101921621	101922080	+	0	NA	intron (NM_020802, intron 1 of 10)	AluSq|SINE|Alu	-5328	NM_178127	253935		NM_178127	ENSG00000187151	ANGPTL5	-	angiopoietin like 5	protein-coding
134812	chr2	148524271	148525130	+	0	NA	Intergenic	Intergenic	-120051	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
233766	chrX	1412771	1413350	+	0	NA	non-coding (NR_026710, exon 4 of 4)	non-coding (NR_026710, exon 4 of 4)	12529	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
59613	chr13	27919971	27920550	+	0	NA	exon (NM_000209, exon 1 of 2)	exon (NM_000209, exon 1 of 2)	260	NM_000209	3651		NM_000209	ENSG00000139515	PDX1	GSF|IDX-1|IPF1|IUF1|MODY4|PAGEN1|PDX-1|STF-1	pancreatic and duodenal homeobox 1	protein-coding
7668	chr1	35720521	35720780	+	0	NA	3' UTR (NM_001330490, exon 25 of 25)	3' UTR (NM_001330490, exon 25 of 25)	-1766	NM_152374	127703		NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding
30854	chr10	86538771	86538930	+	0	NA	Intergenic	MER50|LTR|ERV1	-17058	NM_015045	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
165416	chr3	98003321	98003580	+	0	NA	intron (NR_047685, intron 7 of 9)	intron (NR_047685, intron 7 of 9)	-30999	NM_001042533	84864		NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
14643	chr1	145504621	145505300	+	0	NA	Intergenic	AluJr|SINE|Alu	-99182	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
55842	chr12	109090771	109091130	+	0	NA	intron (NM_001145374, intron 2 of 3)	intron (NM_001145374, intron 2 of 3)	2522	NM_001145374	121642		NM_001001655	ENSG00000189046	ALKBH2	ABH2	alkB homolog 2, alpha-ketoglutarate dependent dioxygenase	protein-coding
152674	chr22	21597821	21598080	+	0	NA	intron (NM_003347, intron 2 of 3)	AluJb|SINE|Alu	30236	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
32741	chr10	104310971	104311330	+	0	NA	3' UTR (NM_001272013, exon 2 of 2)	3' UTR (NM_001272013, exon 2 of 2)	-12214	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
88604	chr16	85601471	85601630	+	0	NA	Intergenic	Intergenic	-9859	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
227165	chr9	86660001	86660430	+	0	NA	Intergenic	L2b|LINE|L2	287291	NM_002048	2619		NM_002048	ENSG00000180447	GAS1	-	growth arrest specific 1	protein-coding
177331	chr4	109804151	109804500	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-2326	NM_001375284	3426		NM_000204	ENSG00000205403	CFI	AHUS3|ARMD13|C3BINA|C3b-INA|FI|IF|KAF	complement factor I	protein-coding
63050	chr13	113108101	113108400	+	0	NA	intron (NM_000131, intron 2 of 8)	CpG	2459	NM_019616	2155		NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
49214	chr12	15979071	15979230	+	0	NA	intron (NM_001300779, intron 5 of 7)	intron (NM_001300779, intron 5 of 7)	67818	NM_015954	51071		NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding
215640	chr8	229421	230050	+	0	NA	intron (NR_003572, intron 2 of 3)	intron (NR_003572, intron 2 of 3)	-2402	NM_001287255	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
160233	chr3	23957571	23957930	+	0	NA	intron (NR_110524, intron 3 of 8)	intron (NR_110524, intron 3 of 8)	-11188	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
129338	chr2	68748671	68749030	+	0	NA	intron (NM_001364821, intron 1 of 10)	intron (NM_001364821, intron 1 of 10)	13473	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
113805	chr19	10576351	10576650	+	0	NA	intron (NM_001300887, intron 9 of 11)	AluY|SINE|Alu	-7521	NM_079421	1032		NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
115146	chr19	14395901	14396730	+	0	NA	intron (NM_001784, intron 4 of 17)	intron (NM_001784, intron 4 of 17)	14871	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
137427	chr2	196592701	196593500	+	0	NA	promoter-TSS (NM_020760)	promoter-TSS (NM_020760)	-117	NM_020760	57520		NM_020760	ENSG00000138411	HECW2	NDHSAL|NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
216221	chr8	12013101	12013600	+	0	NA	Intergenic	MIR|SINE|MIR	-12598	NM_001302695	613211		NM_001033019	ENSG00000205882	DEFB134	-	defensin beta 134	protein-coding
207429	chr7	44495271	44495430	+	0	NA	Intergenic	L1MC3|LINE|L1	-4692	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
103982	chr17	80008121	80008930	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	27347	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
236273	chrX	66030851	66031200	+	0	NA	intron (NM_001184831, intron 2 of 5)	intron (NM_001184831, intron 2 of 5)	9055	NM_007268	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
194887	chr6	34673111	34674850	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-22174	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
119058	chr19	39121721	39122580	+	0	NA	Intergenic	Intergenic	-3636	NM_001014831	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
142121	chr20	2687871	2688980	+	0	NA	Intergenic	Intergenic	-4355	NR_138537	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
103213	chr17	77480801	77481480	+	0	NA	intron (NM_001113495, intron 1 of 9)	intron (NM_001113495, intron 1 of 9)	5505	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
177004	chr4	105473601	105474750	+	0	NA	promoter-TSS (NM_006903)	promoter-TSS (NM_006903)	-105	NM_176866	27068		NM_006903	ENSG00000138777	PPA2	HSPC124|SCFAI|SCFI|SID6-306	inorganic pyrophosphatase 2	protein-coding
46343	chr11	125591871	125593400	+	0	NA	promoter-TSS (NR_132372)	promoter-TSS (NR_132372)	-67	NR_132372	105369550		NR_132372	ENSG00000149557	STT3A-AS1	-	STT3A antisense RNA 1	ncRNA
152120	chr22	19942601	19943180	+	0	NA	intron (NM_000754, intron 1 of 5)	MER67A|LTR|ERV1	-1072	NM_001352300	10587		NM_006440	ENSG00000184470	TXNRD2	GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2|TXNR2	thioredoxin reductase 2	protein-coding
190389	chr5	179791901	179792850	+	0	NA	Intergenic	Intergenic	-1611	NM_145867	4056		NM_000897	ENSG00000213316	LTC4S	-	leukotriene C4 synthase	protein-coding
170567	chr3	186804701	186804900	+	0	NA	intron (NM_181573, intron 1 of 10)	intron (NM_181573, intron 1 of 10)	1682	NM_002916	5984		NM_002916	ENSG00000163918	RFC4	A1|RFC37	replication factor C subunit 4	protein-coding
212939	chr7	130934421	130935030	+	0	NA	Intergenic	MLT2D|LTR|ERVL	21261	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
139629	chr2	225660401	225660700	+	0	NA	intron (NM_001371273, intron 7 of 7)	intron (NM_001371273, intron 7 of 7)	259664	NM_020864	57624		NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding
209627	chr7	77725051	77725350	+	0	NA	intron (NM_198467, intron 1 of 7)	intron (NM_198467, intron 1 of 7)	-27855	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
40041	chr11	62705021	62705280	+	0	NA	intron (NR_037948, intron 3 of 11)	intron (NR_037948, intron 3 of 11)	1165	NM_001130702	26580		NM_032667	ENSG00000168000	BSCL2	GNG3LG|HMN5|HMN5C|HMND13|PELD|SPG17	BSCL2 lipid droplet biogenesis associated, seipin	protein-coding
173853	chr4	22515401	22516200	+	0	NA	TTS (NR_162129)	TTS (NR_162129)	266	NM_145290	166647		NM_145290	ENSG00000152990	ADGRA3	GPR125|PGR21|TEM5L	adhesion G protein-coupled receptor A3	protein-coding
62798	chr13	109654521	109654780	+	0	NA	Intergenic	Intergenic	-73624	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
44778	chr11	112516871	112517030	+	0	NA	intron (NR_120559, intron 2 of 2)	intron (NR_120559, intron 2 of 2)	32605	NR_120560	101928823		NR_120559	ENSG00000254968	LINC02763	-	long intergenic non-protein coding RNA 2763	ncRNA
65656	chr14	52353701	52354300	+	0	NA	Intergenic	AluJb|SINE|Alu	39688	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
233284	chr9	137312321	137312580	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-10179	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
8258	chr1	39786201	39786980	+	0	NA	intron (NM_001720, intron 1 of 6)	intron (NM_001720, intron 1 of 6)	2275	NM_001720	656		NM_001720	ENSG00000116985	BMP8B	BMP8|OP2	bone morphogenetic protein 8b	protein-coding
34632	chr10	133310601	133311100	+	0	NA	intron (NM_145806, intron 4 of 5)	AluJo|SINE|Alu	1487	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
77314	chr15	82439921	82440730	+	0	NA	TTS (NM_198181)	TTS (NM_198181)	4544	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
26407	chr10	17029351	17030330	+	0	NA	intron (NM_001081, intron 27 of 66)	intron (NM_001081, intron 27 of 66)	99971	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
164810	chr3	70953501	70953900	+	0	NA	Intergenic	Intergenic	111224	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
203089	chr6	166381051	166381150	+	0	NA	intron (NR_073093, intron 1 of 4)	intron (NR_073093, intron 1 of 4)	1840	NR_164830	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
133087	chr2	112501071	112501430	+	0	NA	exon (NM_153712, exon 4 of 7)	exon (NM_153712, exon 4 of 7)	19094	NM_153712	150465		NM_153712	ENSG00000114999	TTL	-	tubulin tyrosine ligase	protein-coding
123964	chr19	55406531	55409130	+	0	NA	promoter-TSS (NM_014501)	promoter-TSS (NM_014501)	-42	NM_014501	27338		NM_014501	ENSG00000108106	UBE2S	E2-EPF|E2EPF|EPF5	ubiquitin conjugating enzyme E2 S	protein-coding
80434	chr16	2644121	2644630	+	0	NA	non-coding (NR_024492, exon 1 of 1)	non-coding (NR_024492, exon 1 of 1)	5393	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
122352	chr19	49331501	49332480	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-3416	NM_001774	951		NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
108351	chr18	67417821	67418430	+	0	NA	Intergenic	Intergenic	-98421	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
79446	chr16	713751	713850	+	0	NA	Intergenic	Intergenic	-1318	NM_024042	79006		NM_024042	ENSG00000103260	METRN	C16orf23|c380A1.2	meteorin, glial cell differentiation regulator	protein-coding
80252	chr16	2214271	2216300	+	0	NA	promoter-TSS (NM_001042371)	promoter-TSS (NM_001042371)	-445	NM_001042371	283871		NM_001042371	ENSG00000184207	PGP	AUM|G3PP|PGPase	phosphoglycolate phosphatase	protein-coding
8489	chr1	40819721	40819980	+	0	NA	intron (NM_172163, intron 5 of 12)	intron (NM_172163, intron 5 of 12)	36063	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
157573	chr22	45974401	45974800	+	0	NA	intron (NM_058238, intron 1 of 3)	intron (NM_058238, intron 1 of 3)	2562	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
18420	chr1	161451501	161452780	+	0	NA	Intergenic	CpG	-53317	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
41976	chr11	67369551	67369650	+	0	NA	intron (NM_001166212, intron 1 of 2)	intron (NM_001166212, intron 1 of 2)	3998	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
170710	chr3	187976151	187976330	+	0	NA	intron (NR_135537, intron 1 of 1)	intron (NR_135537, intron 1 of 1)	167	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
89511	chr16	89165901	89166400	+	0	NA	promoter-TSS (NR_046200)	promoter-TSS (NR_046200)	-233	NR_046200	400558		NR_046200	ENSG00000205015	LINC02138	-	long intergenic non-protein coding RNA 2138	ncRNA
44941	chr11	116778551	116778850	+	0	NA	3' UTR (NM_003904, exon 14 of 14)	3' UTR (NM_003904, exon 14 of 14)	-5702	NM_001159736	84811		NM_032725	ENSG00000137656	BUD13	Cwc26|fSAP71	BUD13 homolog	protein-coding
233330	chr9	137436901	137437100	+	0	NA	exon (NM_001033113, exon 5 of 10)	exon (NM_001033113, exon 5 of 10)	4357	NM_198585	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
228530	chr9	100595551	100596300	+	0	NA	Intergenic	Intergenic	17846	NM_001018116	347273		NM_001018116	ENSG00000170681	CAVIN4	MURC|cavin-4	caveolae associated protein 4	protein-coding
215996	chr8	8889901	8890100	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	3630	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
51707	chr12	53196671	53196830	+	0	NA	exon (NM_000889, exon 6 of 16)	exon (NM_000889, exon 6 of 16)	10501	NR_104181	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
113661	chr19	10383651	10384330	+	0	NA	Intergenic	AluJb|SINE|Alu	-3418	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
112032	chr19	5121971	5122330	+	0	NA	intron (NM_015015, intron 11 of 22)	MLT1D|LTR|ERVL-MaLR	153037	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
204650	chr7	5425071	5425230	+	0	NA	Intergenic	CpG-25497	-1604	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
203383	chr6	170529821	170530150	+	0	NA	Intergenic	Intergenic	23322	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
167607	chr3	129572721	129572980	+	0	NA	exon (NM_015103, exon 14 of 36)	exon (NM_015103, exon 14 of 36)	24465	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
86141	chr16	57694601	57695230	+	0	NA	intron (NM_032269, intron 1 of 17)	intron (NM_032269, intron 1 of 17)	109	NM_001289163	84229		NM_032269	ENSG00000159625	DRC7	C16orf50|CCDC135|CFAP50|FAP50	dynein regulatory complex subunit 7	protein-coding
104156	chr17	80393271	80393630	+	0	NA	exon (NM_001256071, exon 68 of 68)	exon (NM_001256071, exon 68 of 68)	-21717	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
101475	chr17	67477571	67478300	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-6350	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
108678	chr18	76921901	76922400	+	0	NA	intron (NM_001306089, intron 20 of 30)	L1ME3G|LINE|L1	94905	NM_001025090	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
121584	chr19	47296191	47297000	+	0	NA	Intergenic	AluSx|SINE|Alu	-13266	NM_001736	728		NM_001736	ENSG00000197405	C5AR1	C5A|C5AR|C5R1|CD88	complement C5a receptor 1	protein-coding
57963	chr12	123909401	123909800	+	0	NA	intron (NM_207437, intron 57 of 77)	intron (NM_207437, intron 57 of 77)	62459	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
49722	chr12	31319021	31320750	+	0	NA	intron (NM_021238, intron 1 of 6)	L2c|LINE|L2	-4431	NR_026806	79857		NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
222704	chr8	141302321	141302580	+	0	NA	intron (NM_001286646, intron 1 of 8)	AluSx|SINE|Alu	5838	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
147241	chr20	57413971	57414600	+	0	NA	Intergenic	Intergenic	-21229	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
158829	chr3	9779621	9780880	+	0	NA	non-coding (NR_103488, exon 7 of 7)	non-coding (NR_103488, exon 7 of 7)	-10303	NM_003656	8536		NM_003656	ENSG00000134072	CAMK1	CAMKI	calcium/calmodulin dependent protein kinase I	protein-coding
212751	chr7	129922751	129923050	+	0	NA	intron (NM_001202498, intron 1 of 6)	AluY|SINE|Alu	30060	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
175872	chr4	80017271	80017980	+	0	NA	intron (NM_001145794, intron 11 of 15)	intron (NM_001145794, intron 11 of 15)	55604	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
1876	chr1	6427301	6428080	+	0	NA	intron (NM_031475, intron 1 of 12)	intron (NM_031475, intron 1 of 12)	2206	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
187773	chr5	145940821	145941580	+	0	NA	intron (NM_152550, intron 2 of 9)	intron (NM_152550, intron 2 of 9)	4622	NM_152550	153769		NM_152550	ENSG00000156463	SH3RF2	HEPP1|POSHER|PPP1R39|RNF158	SH3 domain containing ring finger 2	protein-coding
128514	chr2	60556651	60556750	+	0	NA	Intergenic	Intergenic	-3046	NM_022893	53335		NM_018014	ENSG00000119866	BCL11A	CTIP1|DILOS|EVI9|HBFQTL5|SMARCM1|ZNF856	BCL11 transcription factor A	protein-coding
133314	chr2	113878101	113878700	+	0	NA	intron (NR_110174, intron 1 of 4)	intron (NR_110174, intron 1 of 4)	-11534	NR_102318	10096		NM_005721	ENSG00000115091	ACTR3	ARP3	actin related protein 3	protein-coding
167957	chr3	136596001	136596600	+	0	NA	intron (NM_005862, intron 4 of 33)	Tigger1|DNA|TcMar-Tigger	156078	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
204900	chr7	6102421	6102680	+	0	NA	Intergenic	AluJr|SINE|Alu	-2399	NM_032172	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
66564	chr14	63283871	63284130	+	0	NA	intron (NM_020663, intron 4 of 4)	intron (NM_020663, intron 4 of 4)	34935	NM_145171	122876		NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone subunit beta 5	protein-coding
86848	chr16	67929601	67929800	+	0	NA	TTS (NM_006742)	TTS (NM_006742)	2162	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
107444	chr18	46281151	46281780	+	0	NA	Intergenic	Intergenic	-52553	NM_152470	494470		NM_152470	ENSG00000141622	ARK2C	ARKL2|RNF111L2|RNF165|lncAMPC	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C	protein-coding
206374	chr7	30642251	30642580	+	0	NA	Intergenic	L1PA2|LINE|L1	40041	NM_001883	1395		NM_001883	ENSG00000106113	CRHR2	CRF-RB|CRF2|CRFR2|HM-CRF	corticotropin releasing hormone receptor 2	protein-coding
157240	chr22	43342501	43342700	+	0	NA	intron (NM_173050, intron 1 of 21)	CpG	772	NM_173050	80274		NM_152514	ENSG00000159307	SCUBE1	-	signal peptide, CUB domain and EGF like domain containing 1	protein-coding
54338	chr12	89672051	89672800	+	0	NA	intron (NM_001366524, intron 1 of 21)	AluSx1|SINE|Alu	36413	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
21586	chr1	206501571	206501730	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-5881	NM_182664	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
215968	chr8	8736851	8737250	+	0	NA	Intergenic	Intergenic	35113	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
22182	chr1	212304701	212305100	+	0	NA	intron (NM_001199756, intron 1 of 12)	AluSc|SINE|Alu	3042	NM_001199756	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
53074	chr12	57727221	57728200	+	0	NA	exon (NM_001122772, exon 16 of 19)	exon (NM_001122772, exon 16 of 19)	1470	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
13469	chr1	114572021	114572280	+	0	NA	intron (NM_005872, intron 4 of 6)	intron (NM_005872, intron 4 of 6)	9465	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
169409	chr3	160941771	160942130	+	0	NA	intron (NM_001317912, intron 2 of 4)	intron (NM_001317912, intron 2 of 4)	71352	NR_134243	151742		NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
221928	chr8	129832621	129832880	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-46126	NM_031415	56169		NM_031415	ENSG00000147697	GSDMC	MLZE	gasdermin C	protein-coding
29665	chr10	72032271	72032630	+	0	NA	Intergenic	Intergenic	56101	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
187674	chr5	143220151	143220350	+	0	NA	intron (NR_146198, intron 22 of 22)	intron (NR_146198, intron 22 of 22)	27750	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
148546	chr20	64214901	64215300	+	0	NA	intron (NM_004535, intron 10 of 22)	L3|LINE|CR1	-40595	NM_001104925	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
82503	chr16	17416271	17417030	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	54310	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
91318	chr17	4363651	4364150	+	0	NA	intron (NM_003342, intron 1 of 5)	AluY|SINE|Alu	2774	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
72938	chr15	40439211	40440100	+	0	NA	promoter-TSS (NM_001301132)	promoter-TSS (NM_001301132)	-102	NM_001301132	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
199895	chr6	127855501	127856450	+	0	NA	promoter-TSS (NM_001318531).2	promoter-TSS (NM_001318531).2	-787	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
146355	chr20	49258771	49258930	+	0	NA	intron (NM_021035, intron 7 of 13)	AluSx|SINE|Alu	19207	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
120786	chr19	45443401	45445250	+	0	NA	intron (NM_001369412, intron 1 of 9)	CpG	6441	NM_001369417	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
236540	chrX	72131251	72132300	+	0	NA	5' UTR (NM_001024455, exon 1 of 2)	5' UTR (NM_001024455, exon 1 of 2)	140	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
222603	chr8	141027001	141027200	+	0	NA	Intergenic	Intergenic	-25021	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
201251	chr6	144068101	144068300	+	0	NA	Intergenic	Intergenic	-3601	NM_001289043	5325		NM_002656	ENSG00000118495	PLAGL1	LOT1|ZAC|ZAC1	PLAG1 like zinc finger 1	protein-coding
68676	chr14	90300601	90301100	+	0	NA	intron (NM_017970, intron 7 of 13)	intron (NM_017970, intron 7 of 13)	31091	NM_017970	55051		NM_017970	ENSG00000119720	NRDE2	C14orf102	NRDE-2, necessary for RNA interference, domain containing	protein-coding
184026	chr5	91332201	91332600	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-17998	NR_103548	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
31647	chr10	97398971	97399150	+	0	NA	intron (NM_015179, intron 2 of 33)	AluSp|SINE|Alu	2280	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
231778	chr9	132260071	132260300	+	0	NA	Intergenic	AluSx1|SINE|Alu	94671	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
101562	chr17	68037821	68038380	+	0	NA	intron (NM_002266, intron 3 of 10)	AluYf1|SINE|Alu	2140	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
81535	chr16	9102451	9102550	+	0	NA	intron (NM_014117, intron 2 of 3)	intron (NM_014117, intron 2 of 3)	10856	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
188448	chr5	154475401	154475850	+	0	NA	3' UTR (NM_004821, exon 2 of 2)	3' UTR (NM_004821, exon 2 of 2)	2602	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
192385	chr6	24719101	24719700	+	0	NA	promoter-TSS (NM_030939)	promoter-TSS (NM_030939)	-246	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
29690	chr10	72053171	72053330	+	0	NA	Intergenic	Intergenic	35301	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
181645	chr5	50280651	50280750	+	0	NA	Intergenic	L1PA3|LINE|L1	160588	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
97170	chr17	42659051	42660050	+	0	NA	exon (NM_016437, exon 1 of 11)	exon (NM_016437, exon 1 of 11)	266	NM_016437	27175		NM_016437	ENSG00000037042	TUBG2	-	tubulin gamma 2	protein-coding
24268	chr1	236409071	236409430	+	0	NA	exon (NM_145861, exon 2 of 6)	exon (NM_145861, exon 2 of 6)	13837	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
210935	chr7	101243771	101245600	+	0	NA	intron (NM_016068, intron 1 of 4)	intron (NM_016068, intron 1 of 4)	396	NM_016068	51024		NM_016068	ENSG00000214253	FIS1	CGI-135|TTC11	fission, mitochondrial 1	protein-coding
194506	chr6	33282071	33282230	+	0	NA	intron (NM_005452, intron 10 of 14).5	intron (NM_005452, intron 10 of 14).5	5027	NM_003782	8705		NM_003782	ENSG00000235863	B3GALT4	BETA3GALT4|GALT2|GALT4	beta-1,3-galactosyltransferase 4	protein-coding
72289	chr15	30988021	30988380	+	0	NA	intron (NM_017762, intron 2 of 15).2	intron (NM_017762, intron 2 of 15).2	3428	NM_017762	54893		NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
222953	chr8	143166451	143167080	+	0	NA	Intergenic	Intergenic	-6111	NM_001130478	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
92186	chr17	7825221	7825480	+	0	NA	intron (NM_020877, intron 77 of 85)	intron (NM_020877, intron 77 of 85)	-14556	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
42427	chr11	69121171	69121530	+	0	NA	Intergenic	Intergenic	-34585	NR_161183	107984345		NM_001369201	ENSG00000284713	SMIM38	-	small integral membrane protein 38	protein-coding
78687	chr15	95872251	95872550	+	0	NA	Intergenic	MER41B|LTR|ERV1	255441	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
190083	chr5	177782351	177782450	+	0	NA	intron (NR_146226, intron 1 of 28)	intron (NR_146226, intron 1 of 28)	520	NR_146227	285596		NM_173663	ENSG00000170074	FAM153A	NY-REN-7	family with sequence similarity 153 member A	protein-coding
91582	chr17	5220951	5222050	+	0	NA	intron (NM_001271842, intron 2 of 4)	MIR|SINE|MIR	13360	NM_001319190	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
2063	chr1	7920421	7920680	+	0	NA	3' UTR (NM_001561, exon 8 of 8)	3' UTR (NM_001561, exon 8 of 8)	20289	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
176485	chr4	89894701	89895280	+	0	NA	exon (NM_007351, exon 1 of 8)	exon (NM_007351, exon 1 of 8)	136	NM_007351	22915		NM_007351	ENSG00000138722	MMRN1	ECM|EMILIN4|GPIa*|MMRN	multimerin 1	protein-coding
88634	chr16	85631901	85632180	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	18718	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
84190	chr16	29847851	29847950	+	0	NA	exon (NM_001293205, exon 13 of 13)	exon (NM_001293205, exon 13 of 13)	15326	NM_006319	10423		NM_006319	ENSG00000103502	CDIPT	PIS|PIS1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein-coding
48151	chr12	7925051	7925600	+	0	NA	intron (NM_006931, intron 7 of 9)	MER21A|LTR|ERVL	10862	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
90360	chr17	1229281	1230500	+	0	NA	promoter-TSS (NM_001322842)	promoter-TSS (NM_001322842)	-168	NM_001322841	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
123471	chr19	54163751	54163850	+	0	NA	exon (NM_001145303, exon 8 of 15).6	exon (NM_001145303, exon 8 of 15).6	-4079	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
140592	chr2	233382651	233383130	+	0	NA	intron (NM_152879, intron 1 of 29)	intron (NM_152879, intron 1 of 29)	-5264	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
191951	chr6	16132101	16132380	+	0	NA	intron (NM_013262, intron 2 of 6)	intron (NM_013262, intron 2 of 6)	3154	NM_013262	29116		NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
200012	chr6	129490351	129491650	+	0	NA	intron (NM_000426, intron 56 of 64)	intron (NM_000426, intron 56 of 64)	219177	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
157546	chr22	45602851	45602950	+	0	NA	Intergenic	Intergenic	2747	NR_131244	100506737		NR_131244	ENSG00000238120	LINC01589	TCONS_00029353	long intergenic non-protein coding RNA 1589	ncRNA
84165	chr16	29802151	29802930	+	0	NA	intron (NM_001256269, intron 9 of 14)	intron (NM_001256269, intron 9 of 14)	-3584	NM_001276275	4150		NM_002383	ENSG00000103495	MAZ	PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87	MYC associated zinc finger protein	protein-coding
10620	chr1	68342851	68342950	+	0	NA	Intergenic	Intergenic	107054	NM_000329	6121		NM_000329	ENSG00000116745	RPE65	BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65	retinoid isomerohydrolase RPE65	protein-coding
176618	chr4	99462971	99463130	+	0	NA	Intergenic	Intergenic	-27540	NM_000673	131		NM_000673	ENSG00000196344	ADH7	ADH4	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	protein-coding
68094	chr14	75292101	75292500	+	0	NA	Intergenic	Intergenic	-2104	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
149919	chr21	36169771	36169930	+	0	NA	intron (NM_001320714, intron 2 of 36)	intron (NM_001320714, intron 2 of 36)	5309	NM_005128	9980		NM_005128	ENSG00000142197	DOP1B	21orf5|C21orf5|DOPEY2	DOP1 leucine zipper like protein B	protein-coding
194081	chr6	31886851	31887150	+	0	NA	exon (NM_001289413, exon 14 of 26).2	exon (NM_001289413, exon 14 of 26).2	-7954	NM_001178044	80736		NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1	solute carrier family 44 member 4	protein-coding
90395	chr17	1292801	1293700	+	0	NA	intron (NM_172367, intron 1 of 2)	AluY|SINE|Alu	13588	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
48858	chr12	12413951	12414650	+	0	NA	intron (NM_058169, intron 2 of 3)	SVA_E|Retroposon|SVA	57222	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
76354	chr15	74541801	74542730	+	0	NA	intron (NM_006465, intron 1 of 8)	intron (NM_006465, intron 1 of 8)	1045	NM_006465	10620		NM_006465	ENSG00000179361	ARID3B	BDP|DRIL2	AT-rich interaction domain 3B	protein-coding
191601	chr6	12058171	12058750	+	0	NA	intron (NM_002114, intron 2 of 8)	intron (NM_002114, intron 2 of 8)	46148	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
223255	chr8	143683501	143683700	+	0	NA	promoter-TSS (NM_173831)	promoter-TSS (NM_173831)	-879	NM_001100599	286075		NM_173831	ENSG00000181135	ZNF707	-	zinc finger protein 707	protein-coding
148240	chr20	63636821	63637230	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	9790	NR_132418	100505771		NR_132417	ENSG00000232442	MHENCR	-	melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489	ncRNA
85425	chr16	50337071	50337980	+	0	NA	intron (NM_013263, intron 6 of 16)	AluSp|SINE|Alu	31463	NM_001173984	29117		NM_013263	ENSG00000166164	BRD7	BP75|CELTIX1|NAG4|SMARCI1	bromodomain containing 7	protein-coding
116824	chr19	18565451	18565750	+	0	NA	intron (NM_001171948, intron 4 of 5)	AluSz6|SINE|Alu	-6130	NM_001321017	7311		NM_003333	ENSG00000221983	UBA52	CEP52|HUBCEP52|L40|RPL40	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding
55065	chr12	96488321	96488580	+	0	NA	Intergenic	Intergenic	-1127	NM_001306084	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
30590	chr10	80148001	80148780	+	0	NA	Intergenic	L1M1|LINE|L1	15660	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
236246	chrX	65743651	65743750	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	76046	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
191865	chr6	15281701	15282330	+	0	NA	intron (NM_001267040, intron 1 of 17)	AluSz6|SINE|Alu	33160	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
150775	chr21	43812351	43812450	+	0	NA	non-coding (NR_026961, exon 1 of 2)	non-coding (NR_026961, exon 1 of 2)	167	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
951	chr1	1748101	1748300	+	0	NA	Intergenic	AluJr|SINE|Alu	-2201	NM_001199787	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
121336	chr19	46782651	46782950	+	0	NA	intron (NM_005628, intron 3 of 7)	L2b|LINE|L2	2014	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
166388	chr3	113514401	113516300	+	0	NA	promoter-TSS (NM_001331079)	promoter-TSS (NM_001331079)	-194	NM_001331078	152185		NM_144718	ENSG00000163611	SPICE1	CCDC52|SPICE	spindle and centriole associated protein 1	protein-coding
135121	chr2	157419401	157419680	+	0	NA	intron (NM_004288, intron 6 of 7)	intron (NM_004288, intron 6 of 7)	24549	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
160167	chr3	23035871	23036230	+	0	NA	Intergenic	L1PA6|LINE|L1	166528	NR_136177	100505877		NR_136176	ENSG00000233153	UBE2E2-DT	UBE2E2-AS1	UBE2E2 divergent transcript	ncRNA
111056	chr19	3115071	3115430	+	0	NA	intron (NM_002067, intron 4 of 6)	AluJo|SINE|Alu	-20783	NM_002068	2769		NM_002068	ENSG00000060558	GNA15	GNA16|HG1L	G protein subunit alpha 15	protein-coding
115173	chr19	14428151	14428450	+	0	NA	Intergenic	Intergenic	-5006	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
3953	chr1	18637101	18637300	+	0	NA	intron (NM_001135254, intron 4 of 8)	X9_LINE|LINE|L1	6354	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
83944	chr16	29118521	29119380	+	0	NA	Intergenic	Intergenic	44108	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
53696	chr12	68529351	68529450	+	0	NA	Intergenic	L1PA16|LINE|L1	-77916	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
92238	chr17	7909251	7909780	+	0	NA	intron (NM_001005271, intron 37 of 39)	intron (NM_001005271, intron 37 of 39)	3392	NR_003000	677763		NR_003000	ENSG00000252835	SCARNA21	ACA68|SCARNA21A	small Cajal body-specific RNA 21	ncRNA
224735	chr9	21710951	21711050	+	0	NA	Intergenic	MLT2D|LTR|ERVL	-91636	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
89759	chr16	89453701	89454350	+	0	NA	non-coding (NR_110931, exon 3 of 3)	non-coding (NR_110931, exon 3 of 3)	23107	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109592	chr19	919401	921080	+	0	NA	intron (NM_032551, intron 4 of 4)	CpG-12951	2907	NM_032551	84634		NM_032551	ENSG00000116014	KISS1R	AXOR12|CPPB1|GPR54|HH8|HOT7T175|KISS-1R	KISS1 receptor	protein-coding
85373	chr16	50273951	50275380	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	8114	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
193312	chr6	30106171	30106680	+	0	NA	intron (NR_126470, intron 1 of 3)	intron (NR_126470, intron 1 of 3)	1185	NR_126470	104533120		NR_126470	ENSG00000231226	TRIM31-AS1	-	TRIM31 antisense RNA 1	ncRNA
182579	chr5	65964321	65965230	+	0	NA	intron (NM_001253697, intron 1 of 25)	AluSz|SINE|Alu	-19202	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
55090	chr12	97308521	97308830	+	0	NA	Intergenic	Intergenic	-154101	NR_152618	196475		NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript	ncRNA
124107	chr19	55657751	55657850	+	0	NA	intron (NM_007279, intron 1 of 11)	MIR|SINE|MIR	2765	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
30565	chr10	79824321	79824800	+	0	NA	intron (NR_120613, intron 1 of 6)	L1MD1|LINE|L1	-1342	NR_029407	642361		NR_029407	ENSG00000272447	LOC642361	-	uncharacterized LOC642361	ncRNA
163939	chr3	52720751	52721650	+	0	NA	intron (NM_001348414, intron 15 of 15)	L1M4c|LINE|L1	15094	NM_014041	28972		NM_014041	ENSG00000114902	SPCS1	HSPC033|SPC1|SPC12|YJR010C-A	signal peptidase complex subunit 1	protein-coding
194200	chr6	32173151	32173850	+	0	NA	promoter-TSS (NM_001371439)	promoter-TSS (NM_001371439)	-384	NM_001371439	10554		NM_006411	ENSG00000204310	AGPAT1	1-AGPAT1|G15|LPAAT-alpha|LPAATA|LPLAT1	1-acylglycerol-3-phosphate O-acyltransferase 1	protein-coding
92989	chr17	17154951	17155950	+	0	NA	intron (NM_015134, intron 13 of 22)	AluSx|SINE|Alu	50883	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
21658	chr1	206689421	206689780	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	4695	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
133881	chr2	129979671	129980350	+	0	NA	5' UTR (NM_032144, exon 1 of 1)	5' UTR (NM_032144, exon 1 of 1)	344	NM_032144	84084		NM_032144	ENSG00000222014	RAB6C	WTH3	RAB6C, member RAS oncogene family	protein-coding
126599	chr2	28777451	28777750	+	0	NA	intron (NM_206876, intron 3 of 8)	L2b|LINE|L2	25770	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
100919	chr17	64465721	64465980	+	0	NA	intron (NM_001085423, intron 6 of 9)	L1ME4b|LINE|L1	16735	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
230917	chr9	129320271	129321680	+	0	NA	promoter-TSS (NR_149714)	promoter-TSS (NR_149714)	-41	NR_149714	414318		NR_149714		LINC02913	C9orf106	long intergenic non-protein coding RNA 2913	ncRNA
57345	chr12	121769451	121769750	+	0	NA	intron (NM_001080825, intron 6 of 11)	AluJo|SINE|Alu	24088	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
78825	chr15	99708801	99709000	+	0	NA	intron (NM_001130927, intron 8 of 9)	L2a|LINE|L2	24537	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
147829	chr20	62737651	62738380	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	29179	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
71762	chr15	21110201	21110850	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	107248	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
158241	chr22	50296271	50296630	+	0	NA	5' UTR (NM_001376872, exon 2 of 39)	5' UTR (NM_001376872, exon 2 of 39)	3885	NM_001376883	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
114986	chr19	14040401	14040900	+	0	NA	intron (NM_004843, intron 4 of 13)	AluSx1|SINE|Alu	8888	NM_004843	9466		NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
33152	chr10	112446251	112447700	+	0	NA	promoter-TSS (NM_001351085)	promoter-TSS (NM_001351085)	-13	NM_001318205	143187		NM_145206	ENSG00000151532	VTI1A	MMDS3|MVti1|VTI1RP2|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding
8579	chr1	41379321	41379580	+	0	NA	intron (NM_001291281, intron 1 of 2)	intron (NM_001291281, intron 1 of 2)	-3781	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
220367	chr8	99862271	99863250	+	0	NA	intron (NM_152564, intron 58 of 61)	intron (NM_152564, intron 58 of 61)	30947	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
23739	chr1	232577901	232578100	+	0	NA	intron (NM_001377488, intron 1 of 21)	Tigger1|DNA|TcMar-Tigger	52133	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
60476	chr13	41178001	41178200	+	0	NA	intron (NR_120423, intron 3 of 3)	intron (NR_120423, intron 3 of 3)	16469	NM_032138	84078		NM_032138	ENSG00000120696	KBTBD7	-	kelch repeat and BTB domain containing 7	protein-coding
9787	chr1	53563671	53563830	+	0	NA	intron (NM_147193, intron 3 of 9)	L1ME3F|LINE|L1	104351	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
152779	chr22	21811971	21812400	+	0	NA	intron (NM_138957, intron 1 of 7)	L1MA7|LINE|L1	55460	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
76633	chr15	75578071	75580330	+	0	NA	5' UTR (NM_002833, exon 1 of 13)	5' UTR (NM_002833, exon 1 of 13)	115	NM_002833	5780		NM_002833	ENSG00000169410	PTPN9	MEG2|PTPMEG2	protein tyrosine phosphatase non-receptor type 9	protein-coding
106026	chr18	8601601	8602800	+	0	NA	Intergenic	LTR52|LTR|ERVL	-7245	NM_001025300	201475		NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding
178284	chr4	145055301	145055900	+	0	NA	intron (NM_001256711, intron 5 of 6)	L1MB2|LINE|L1	41782	NM_001318367	10393		NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding
73899	chr15	50679701	50679900	+	0	NA	intron (NR_149152, intron 1 of 38)	AluSz6|SINE|Alu	6997	NM_001301212	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
238853	chrX	154478321	154479900	+	0	NA	5' UTR (NM_006014, exon 1 of 3)	5' UTR (NM_006014, exon 1 of 3)	147	NM_006014	8270		NM_006014	ENSG00000196976	LAGE3	CVG5|DXS9879E|DXS9951E|ESO3|GAMOS2|ITBA2|Pcc1	L antigen family member 3	protein-coding
226188	chr9	65147401	65147800	+	0	NA	intron (NR_160670, intron 2 of 3).3	intron (NR_160670, intron 2 of 3).3	2667	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
101854	chr17	74203151	74204380	+	0	NA	promoter-TSS (NM_001035258)	promoter-TSS (NM_001035258)	87	NM_001035258	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
95004	chr17	32371501	32371700	+	0	NA	3' UTR (NM_001098507, exon 12 of 12)	3' UTR (NM_001098507, exon 12 of 12)	21443	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
159302	chr3	12992651	12992750	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	-5599	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
161630	chr3	43293301	43293500	+	0	NA	intron (NM_001330750, intron 1 of 4)	intron (NM_001330750, intron 1 of 4)	6860	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
148573	chr21	5020721	5021400	+	0	NA	Intergenic	CpG	-1471	NM_001363770	102723996		NM_001363770	ENSG00000277117	LOC102723996	-	ICOS ligand	protein-coding
70487	chr14	102086251	102088100	+	0	NA	promoter-TSS (NM_005348)	promoter-TSS (NM_005348)	-131	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
191739	chr6	13743771	13743930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-32015	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
52631	chr12	56272721	56272980	+	0	NA	3' UTR (NM_004077, exon 11 of 11)	3' UTR (NM_004077, exon 11 of 11)	5524	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
180575	chr5	14745721	14746180	+	0	NA	exon (NM_054027, exon 7 of 12)	exon (NM_054027, exon 7 of 12)	33256	NR_046285	100130744		NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA
2843	chr1	11245801	11246600	+	0	NA	intron (NM_004958, intron 8 of 57)	intron (NM_004958, intron 8 of 57)	16351	NM_004958	2475		NM_004958	ENSG00000198793	MTOR	FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS	mechanistic target of rapamycin kinase	protein-coding
227531	chr9	91580201	91580400	+	0	NA	Intergenic	MIR3|SINE|MIR	-55951	NR_037472	100500821		NR_037472	ENSG00000266855	MIR3910-1	mir-3910-1	microRNA 3910-1	ncRNA
88353	chr16	84563351	84563650	+	0	NA	Intergenic	L2c|LINE|L2	54578	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
102915	chr17	76568671	76569150	+	0	NA	intron (NM_006456, intron 6 of 8)	intron (NM_006456, intron 6 of 8)	7277	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
107350	chr18	45879871	45880650	+	0	NA	intron (NM_020964, intron 31 of 43)	intron (NM_020964, intron 31 of 43)	54585	NM_213602	284266		NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding
224869	chr9	31303801	31304080	+	0	NA	Intergenic	Intergenic	77550	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
227816	chr9	93268471	93269200	+	0	NA	intron (NM_006648, intron 18 of 28)	intron (NM_006648, intron 18 of 28)	77468	NR_166069	445577		NM_001098808		FAM120A2P	C9orf129|bA165J3.3	family with sequence similarity 120A2, pseudogene	pseudo
40229	chr11	63562901	63563300	+	0	NA	intron (NM_017878, intron 1 of 3)	intron (NM_017878, intron 1 of 3)	279	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
23568	chr1	229432501	229433230	+	0	NA	exon (NM_001100, exon 3 of 7)	exon (NM_001100, exon 3 of 7)	1229	NM_001100	58		NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|CMYP2A|CMYP2B|CMYP2C|MPFD|NEM1|NEM2|NEM3|SHPM	actin alpha 1, skeletal muscle	protein-coding
32666	chr10	103888101	103889150	+	0	NA	intron (NM_024928, intron 9 of 9)	intron (NM_024928, intron 9 of 9)	29559	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
86297	chr16	58627851	58628300	+	0	NA	intron (NM_206999, intron 1 of 30)	AluSx1|SINE|Alu	1751	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
171214	chr3	195755851	195756550	+	0	NA	intron (NM_018406, intron 18 of 24)	MamGypLTR1d|LTR|Gypsy	35222	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
187746	chr5	143717401	143717670	+	0	NA	Intergenic	Intergenic	37675	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
172261	chr4	1404801	1405000	+	0	NA	intron (NM_001290079, intron 1 of 1)	CpG	1542	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
65312	chr14	50093371	50093800	+	0	NA	intron (NR_131171, intron 1 of 8)	(CTCT)n|Simple_repeat|Simple_repeat	11458	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
10571	chr1	67286001	67286430	+	0	NA	Intergenic	L1MEg|LINE|L1	-21149	NR_047584	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
164231	chr3	56980801	56981080	+	0	NA	intron (NM_001377411, intron 1 of 11)	intron (NM_001377411, intron 1 of 11)	40900	NR_046572	100874200		NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
186156	chr5	134175791	134178130	+	0	NA	promoter-TSS (NM_006930)	promoter-TSS (NM_006930)	-10	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
178330	chr4	145732751	145734400	+	0	NA	TTS (NM_001080531)	TTS (NM_001080531)	53429	NM_001080531	646603		NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
163751	chr3	52358601	52359930	+	0	NA	exon (NM_015512, exon 26 of 78)	exon (NM_015512, exon 26 of 78)	42946	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
46965	chr11	134735001	134735600	+	0	NA	promoter-TSS (NR_147836)	promoter-TSS (NR_147836)	-645	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
45878	chr11	119728511	119730300	+	0	NA	promoter-TSS (NR_120587)	promoter-TSS (NR_120587)	-178	NR_120587	102724301		NR_120587	ENSG00000254854	NECTIN1-DT	-	NECTIN1 divergent transcript	ncRNA
167065	chr3	126986071	126986380	+	0	NA	Intergenic	Intergenic	-2369	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
216849	chr8	22606651	22606750	+	0	NA	intron (NM_021174, intron 4 of 20)	intron (NM_021174, intron 4 of 20)	1658	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
105625	chr18	804951	805930	+	0	NA	intron (NM_005433, intron 1 of 11)	intron (NM_005433, intron 1 of 11)	6802	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
31464	chr10	96370471	96370880	+	0	NA	intron (NM_012465, intron 19 of 20)	intron (NM_012465, intron 19 of 20)	-11310	NM_001284321	93377		NM_033207	ENSG00000197430	OPALIN	HTMP10|TMEM10|TMP10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding
131555	chr2	96771121	96771380	+	0	NA	intron (NM_020184, intron 1 of 6)	intron (NM_020184, intron 1 of 6)	10348	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
180462	chr5	10701501	10701730	+	0	NA	intron (NM_004394, intron 2 of 3)	intron (NM_004394, intron 2 of 3)	59619	NM_004394	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
198637	chr6	107792221	107792480	+	0	NA	intron (NM_198081, intron 1 of 7)	Plat_L3|LINE|CR1	31963	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
229926	chr9	126631401	126631600	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	17572	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
46990	chr12	44301	44500	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-6267	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
113152	chr19	8344451	8344850	+	0	NA	Intergenic	AluSx|SINE|Alu	-1388	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
41179	chr11	65626951	65627050	+	0	NA	exon (NM_032223, exon 21 of 35)	exon (NM_032223, exon 21 of 35)	-9310	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
45171	chr11	117225921	117227400	+	0	NA	intron (NM_004716, intron 5 of 16)	intron (NM_004716, intron 5 of 16)	5413	NM_004716	9159		NM_004716	ENSG00000160613	PCSK7	LPC|PC7|PC8|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding
228236	chr9	97921701	97923300	+	0	NA	promoter-TSS (NM_016481)	promoter-TSS (NM_016481)	0	NM_001371658	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
65588	chr14	52068821	52069800	+	0	NA	promoter-TSS (NM_007361)	promoter-TSS (NM_007361)	-251	NM_007361	22795		NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
190383	chr5	179763171	179763680	+	0	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	-30561	NM_145867	4056		NM_000897	ENSG00000213316	LTC4S	-	leukotriene C4 synthase	protein-coding
2060	chr1	7914971	7915130	+	0	NA	TTS (NM_001561)	TTS (NM_001561)	25789	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
119671	chr19	40848351	40849280	+	0	NA	intron (NM_000762, intron 2 of 8)	intron (NM_000762, intron 2 of 8)	1632	NM_000762	1548		NM_000762	ENSG00000255974	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450 family 2 subfamily A member 6	protein-coding
212933	chr7	130928371	130929330	+	0	NA	Intergenic	MIR|SINE|MIR	15386	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
19712	chr1	181093871	181094450	+	0	NA	Intergenic	Intergenic	5460	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
220955	chr8	109541771	109541930	+	0	NA	intron (NM_001278938, intron 1 of 6)	intron (NM_001278938, intron 1 of 6)	1224	NM_001278938	9166		NM_004215	ENSG00000147654	EBAG9	EB9|PDAF	estrogen receptor binding site associated antigen 9	protein-coding
41377	chr11	65987471	65987930	+	0	NA	Intergenic	Intergenic	-14379	NM_001143985	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
139623	chr2	225122871	225123130	+	0	NA	Intergenic	Intergenic	-80532	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
87440	chr16	70742301	70742500	+	0	NA	intron (NM_001351157, intron 12 of 17)	intron (NM_001351157, intron 12 of 17)	-12695	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
54742	chr12	93773051	93773600	+	0	NA	intron (NM_001320100, intron 2 of 2)	THE1B|LTR|ERVL-MaLR	-35502	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
192085	chr6	16674201	16674600	+	0	NA	intron (NM_000332, intron 3 of 8)	AluSx1|SINE|Alu	85784	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
182546	chr5	65724371	65724950	+	0	NA	intron (NM_020726, intron 1 of 12)	L1MB4|LINE|L1	2455	NM_020726	57486		NM_020726	ENSG00000123213	NLN	AGTBP|EP24.16|MEP|MOP	neurolysin	protein-coding
78599	chr15	93088731	93090050	+	0	NA	promoter-TSS (NM_001166287)	promoter-TSS (NM_001166287)	-179	NM_020211	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
194814	chr6	34248331	34249980	+	0	NA	promoter-TSS (NR_155742)	promoter-TSS (NR_155742)	-47	NM_178508	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
173859	chr4	22690851	22690950	+	0	NA	Intergenic	Intergenic	-2014	NM_020973	57733		NM_020973	ENSG00000249948	GBA3	CBG|CBGL1|GLUC|KLRP	glucosylceramidase beta 3 (gene/pseudogene)	protein-coding
28161	chr10	43594471	43596500	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	-10922	NM_001318142	220992		NM_145312	ENSG00000198298	ZNF485	-	zinc finger protein 485	protein-coding
160239	chr3	23964101	23964300	+	0	NA	intron (NR_110524, intron 6 of 8)	AluSx3|SINE|Alu	-17638	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
131632	chr2	97012151	97012450	+	0	NA	Intergenic	Intergenic	-25720	NM_001122646	51252		NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding
81505	chr16	8956801	8957630	+	0	NA	promoter-TSS (NM_001321858)	promoter-TSS (NM_001321858)	-835	NM_001321858	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
55320	chr12	103927751	103927850	+	0	NA	intron (NR_027249, intron 1 of 15)	intron (NR_027249, intron 1 of 15)	2411	NR_027249	253724		NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo
207423	chr7	44480851	44481150	+	0	NA	intron (NM_015332, intron 2 of 5)	MER2|DNA|TcMar-Tigger	9658	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
129974	chr2	73993701	73994550	+	0	NA	intron (NM_001287491, intron 2 of 11)	L3b|LINE|CR1	-8567	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
220605	chr8	100917101	100917580	+	0	NA	3' UTR (NM_001135701, exon 6 of 6)	3' UTR (NM_001135701, exon 6 of 6)	33231	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
7957	chr1	37634121	37634780	+	0	NA	intron (NM_001242908, intron 1 of 6)	CpG	442	NM_001038633	284654		NM_173640	ENSG00000169218	RSPO1	CRISTIN3|RSPO	R-spondin 1	protein-coding
184326	chr5	96934231	96935600	+	0	NA	Intergenic	CpG	-1165	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
236279	chrX	66038421	66038680	+	0	NA	intron (NM_001184830, intron 1 of 6)	intron (NM_001184830, intron 1 of 6)	1530	NM_007268	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
28868	chr10	62691751	62692530	+	0	NA	Intergenic	Intergenic	-112580	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
146055	chr20	47383951	47384680	+	0	NA	non-coding (NR_146494, exon 4 of 4)	non-coding (NR_146494, exon 4 of 4)	27079	NR_146494	102723442		NR_146494		LINC01754	-	long intergenic non-protein coding RNA 1754	ncRNA
106277	chr18	12653071	12653230	+	0	NA	intron (NM_001128626, intron 1 of 16)	MER20|DNA|hAT-Charlie	3582	NM_001128627	56907		NM_020148	ENSG00000134278	SPIRE1	Spir-1	spire type actin nucleation factor 1	protein-coding
233217	chr9	137231471	137231630	+	0	NA	intron (NM_080877, intron 1 of 12)	intron (NM_080877, intron 1 of 12)	617	NM_080877	142680		NM_080877	ENSG00000198569	SLC34A3	HHRH|NPT2C|NPTIIc	solute carrier family 34 member 3	protein-coding
82533	chr16	18347901	18348100	+	0	NA	non-coding (NR_146336, exon 10 of 35).2	non-coding (NR_146336, exon 10 of 35).2	-3921	NR_106970	102465683		NR_106970	ENSG00000276311	MIR6511A3	MIR6511A-3|hsa-mir-6511a-3	microRNA 6511a-3	ncRNA
142448	chr20	3989201	3989880	+	0	NA	intron (NM_001134338, intron 1 of 6)	intron (NM_001134338, intron 1 of 6)	26018	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
103219	chr17	77486071	77486230	+	0	NA	intron (NM_001293697, intron 2 of 9)	AluJo|SINE|Alu	10515	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
94925	chr17	31949421	31949680	+	0	NA	intron (NM_015355, intron 4 of 15)	AluSx1|SINE|Alu	12543	NM_015355	23512		NM_015355	ENSG00000178691	SUZ12	CHET9|IMMAS|JJAZ1	SUZ12 polycomb repressive complex 2 subunit	protein-coding
72908	chr15	40347621	40347880	+	0	NA	Intergenic	Intergenic	-3283	NM_001145643	644844		NM_001145643	ENSG00000233041	PHGR1	-	proline, histidine and glycine rich 1	protein-coding
66855	chr14	64976671	64977130	+	0	NA	intron (NM_001202559, intron 3 of 13)	intron (NM_001202559, intron 3 of 13)	-4564	NM_001330182	376267		NM_198686	ENSG00000139998	RAB15	-	RAB15, member RAS oncogene family	protein-coding
199118	chr6	111690101	111690580	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	68791	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
54308	chr12	89470651	89471250	+	0	NA	intron (NM_172240, intron 6 of 11)	intron (NM_172240, intron 6 of 11)	53846	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
178766	chr4	153349271	153349630	+	0	NA	intron (NM_001253861, intron 1 of 6)	intron (NM_001253861, intron 1 of 6)	4762	NR_045605	84057		NM_032117	ENSG00000121211	MND1	GAJ	meiotic nuclear divisions 1	protein-coding
139724	chr2	229713451	229713780	+	0	NA	intron (NM_139072, intron 1 of 12)	CpG	940	NM_139072	92737		NM_139072	ENSG00000187957	DNER	UNQ26|bet	delta/notch like EGF repeat containing	protein-coding
206074	chr7	27175371	27176050	+	0	NA	intron (NR_037939, intron 1 of 1)	intron (NR_037939, intron 1 of 1)	-1390	NM_018951	3206		NM_018951	ENSG00000253293	HOXA10	HOX1|HOX1.8|HOX1H|PL	homeobox A10	protein-coding
128806	chr2	62456821	62457400	+	0	NA	Intergenic	CpG	49085	NM_198276	200728		NM_198276	ENSG00000186889	TMEM17	-	transmembrane protein 17	protein-coding
157579	chr22	45978521	45979880	+	0	NA	Intergenic	CpG-19213	-2038	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
220861	chr8	103404551	103405080	+	0	NA	non-coding (NR_102338, exon 4 of 8)	non-coding (NR_102338, exon 4 of 8)	10292	NM_030780	81034		NM_030780	ENSG00000164933	SLC25A32	GLYB|MFT|MFTC|RREI	solute carrier family 25 member 32	protein-coding
145656	chr20	44914071	44914750	+	0	NA	intron (NM_001372179, intron 2 of 14)	AluY|SINE|Alu	4350	NR_134987	80336		NM_001124756	ENSG00000101104	PABPC1L	C20orf119|EPAB|PABPC1L1|dJ1069P2.3	poly(A) binding protein cytoplasmic 1 like	protein-coding
133014	chr2	111705821	111706330	+	0	NA	Intergenic	Intergenic	65059	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
97081	chr17	42392571	42392730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4208	NM_001384989	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
25013	chr10	3421871	3422230	+	0	NA	intron (NR_131187, intron 1 of 1)	intron (NR_131187, intron 1 of 1)	80788	NR_155743	101927880		NR_155743	ENSG00000233321	LINC02669	-	long intergenic non-protein coding RNA 2669	ncRNA
176992	chr4	105150671	105150830	+	0	NA	intron (NM_001127208, intron 1 of 10)	intron (NM_001127208, intron 1 of 10)	3874	NM_001127208	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
12417	chr1	101348601	101349000	+	0	NA	intron (NR_126402, intron 3 of 4)	intron (NR_126402, intron 3 of 4)	24963	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
222731	chr8	141394571	141395730	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	3129	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
208732	chr7	73434921	73435180	+	0	NA	exon (NM_003508, exon 1 of 1)	exon (NM_003508, exon 1 of 1)	1272	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
145906	chr20	45967551	45967850	+	0	NA	intron (NM_022095, intron 5 of 27)	intron (NM_022095, intron 5 of 27)	4503	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
41668	chr11	66590771	66591330	+	0	NA	exon (NM_018219, exon 1 of 1)	exon (NM_018219, exon 1 of 1)	2013	NM_018219	55231		NM_018219	ENSG00000182791	CCDC87	-	coiled-coil domain containing 87	protein-coding
203083	chr6	166339651	166339750	+	0	NA	intron (NR_130113, intron 1 of 6)	L2a|LINE|L2	2845	NR_130113	113402		NM_145169	ENSG00000198818	SFT2D1	C6orf83|pRGR1	SFT2 domain containing 1	protein-coding
90025	chr16	89897101	89897500	+	0	NA	intron (NM_014972, intron 9 of 17)	intron (NM_014972, intron 9 of 17)	-21562	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
96471	chr17	40246401	40246600	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSq2|SINE|Alu	27196	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
1299	chr1	2343151	2343450	+	0	NA	intron (NM_024848, intron 10 of 13)	intron (NM_024848, intron 10 of 13)	9361	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
68324	chr14	77557201	77557600	+	0	NA	intron (NM_004863, intron 6 of 11)	intron (NM_004863, intron 6 of 11)	-58584	NM_182509	145501		NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2	protein-coding
20683	chr1	200488471	200488900	+	0	NA	Intergenic	L2a|LINE|L2	-78649	NM_001281293	23528		NM_012482	ENSG00000162702	ZNF281	GZP1|ZBP-99|ZBP99|ZNP-99	zinc finger protein 281	protein-coding
19224	chr1	172544471	172545000	+	0	NA	intron (NM_001282751, intron 1 of 21)	L2c|LINE|L2	11585	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
178798	chr4	153495101	153495300	+	0	NA	intron (NM_015196, intron 3 of 34)	AluSx|SINE|Alu	28840	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
112332	chr19	5913271	5913430	+	0	NA	promoter-TSS (NM_004058)	promoter-TSS (NM_004058)	-904	NM_004058	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
89279	chr16	88687721	88687980	+	0	NA	TTS (NR_024399)	TTS (NR_024399)	-1343	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
206938	chr7	38237551	38237930	+	0	NA	Intergenic	Intergenic	35907	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
51737	chr12	53228451	53228550	+	0	NA	intron (NM_000966, intron 2 of 9)	intron (NM_000966, intron 2 of 9)	3709	NM_000966	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
233030	chr9	137032901	137033600	+	0	NA	intron (NM_207511, intron 2 of 2)	(GTTT)n|Simple_repeat|Simple_repeat	-1162	NM_004479	2529		NM_004479	ENSG00000180549	FUT7	FucT-VII	fucosyltransferase 7	protein-coding
153108	chr22	23566351	23566830	+	0	NA	Intergenic	CpG	13700	NM_020070	3543		NM_020070	ENSG00000128322	IGLL1	14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2	immunoglobulin lambda like polypeptide 1	protein-coding
121517	chr19	47216271	47216630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10492	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
114578	chr19	12923451	12923550	+	0	NA	intron (NM_004461, intron 12 of 12)	AluSx1|SINE|Alu	3180	NR_049880	100847016		NR_049880	ENSG00000266721	MIR5695	-	microRNA 5695	ncRNA
104911	chr17	81905721	81906050	+	0	NA	intron (NM_001256434, intron 10 of 13)	intron (NM_001256434, intron 10 of 13)	3647	NM_148896	256933		NM_148896	ENSG00000183979	NPB	L7|PPL7|PPNPB	neuropeptide B	protein-coding
216876	chr8	22641221	22641530	+	0	NA	non-coding (NR_027715, exon 1 of 1)	non-coding (NR_027715, exon 1 of 1)	834	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
218550	chr8	54024701	54025280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2542	NR_109902	6917		NM_006756	ENSG00000187735	TCEA1	GTF2S|SII|TCEA|TF2S|TFIIS	transcription elongation factor A1	protein-coding
108051	chr18	59347071	59347230	+	0	NA	intron (NM_005570, intron 7 of 12)	AluSx3|SINE|Alu	12115	NM_005570	3998		NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
122052	chr19	48652051	48653000	+	0	NA	intron (NR_004401, intron 1 of 4)	AluY|SINE|Alu	-6338	NR_136241	770		NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
169403	chr3	160758351	160758650	+	0	NA	intron (NM_139245, intron 1 of 3)	intron (NM_139245, intron 1 of 3)	2269	NM_139245	151742		NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding
133387	chr2	118187421	118188030	+	0	NA	Intergenic	Intergenic	-1339	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
80404	chr16	2598651	2598950	+	0	NA	3' UTR (NM_001261816, exon 12 of 12)	3' UTR (NM_001261816, exon 12 of 12)	-4584	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
128587	chr2	60919151	60919530	+	0	NA	intron (NM_001291746, intron 7 of 9)	AluJb|SINE|Alu	37766	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
203389	chr6	170558071	170558450	+	0	NA	intron (NM_003194, intron 2 of 7)	L1ME1|LINE|L1	3891	NM_003194	6908		NM_003194	ENSG00000112592	TBP	GTF2D|GTF2D1|HDL4|SCA17|TBP1|TFIID	TATA-box binding protein	protein-coding
26437	chr10	17248201	17248400	+	0	NA	Intergenic	L1M5|LINE|L1	-18315	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
140747	chr2	234485301	234485530	+	0	NA	Intergenic	L2a|LINE|L2	11634	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
43558	chr11	82989901	82990330	+	0	NA	intron (NM_014488, intron 4 of 5)	intron (NM_014488, intron 4 of 5)	44159	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
158823	chr3	9749251	9751430	+	0	NA	exon (NM_016829, exon 1 of 8)	exon (NM_016829, exon 1 of 8)	396	NM_016820	4968		NM_002542	ENSG00000114026	OGG1	HMMH|HOGG1|MUTM|OGH1	8-oxoguanine DNA glycosylase	protein-coding
8829	chr1	43034521	43035130	+	0	NA	Intergenic	MIR|SINE|MIR	75776	NR_033967	440584		NR_033967	ENSG00000227533	SLC2A1-DT	SLC2A1-AS1	SLC2A1 divergent transcript	ncRNA
187779	chr5	146130451	146130550	+	0	NA	intron (NM_016460, intron 23 of 30)	intron (NM_016460, intron 23 of 30)	-24923	NM_001029869	153770		NM_001029869	ENSG00000173261	PLAC8L1	-	PLAC8 like 1	protein-coding
34602	chr10	133267151	133267250	+	0	NA	intron (NM_001109, intron 21 of 22)	intron (NM_001109, intron 21 of 22)	9668	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
188121	chr5	150387771	150388130	+	0	NA	exon (NM_001135245, exon 17 of 26)	exon (NM_001135245, exon 17 of 26)	24806	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
222959	chr8	143179051	143179930	+	0	NA	Intergenic	MER51E|LTR|ERV1	-18836	NM_001130478	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
464	chr1	1143671	1143830	+	0	NA	non-coding (NR_038869, exon 3 of 3)	non-coding (NR_038869, exon 3 of 3)	6733	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
171800	chr4	508401	509200	+	0	NA	intron (NM_001345988, intron 4 of 11)	intron (NM_001345988, intron 4 of 11)	9590	NM_001345989	54872		NM_017733	ENSG00000174227	PIGG	EMM|GPI7|LAS21|MRT53|NEDHSCA|PRO4405|RLGS1930	phosphatidylinositol glycan anchor biosynthesis class G (EMM blood group)	protein-coding
68968	chr14	91428271	91428630	+	0	NA	Intergenic	AluSx|SINE|Alu	-10630	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
121760	chr19	47757751	47757850	+	0	NA	TTS (NM_015710)	TTS (NM_015710)	1947	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
26955	chr10	26588571	26588830	+	0	NA	Intergenic	Intergenic	-1165	NR_026793	645528		NR_026793	ENSG00000290444	FAM238A	C10orf50|LINC00264|NCRNA00264|bA128B16.2	family with sequence similarity 238 member A	ncRNA
115720	chr19	16238051	16238550	+	0	NA	3' UTR (NM_032493, exon 12 of 12)	3' UTR (NM_032493, exon 12 of 12)	40389	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
190089	chr5	177809271	177810480	+	0	NA	promoter-TSS (NR_157842)	promoter-TSS (NR_157842)	-368	NR_157842	105377752		NR_157842		LOC105377752	-	FAM83G pseudogene	pseudo
119358	chr19	40055571	40056400	+	0	NA	intron (NM_001005851, intron 1 of 4).2	CpG	246	NM_001005851	163131		NM_001005851	ENSG00000128000	ZNF780B	ZNF779	zinc finger protein 780B	protein-coding
162235	chr3	47152751	47153250	+	0	NA	intron (NR_146158, intron 1 of 21)	intron (NR_146158, intron 1 of 21)	11113	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
177304	chr4	109645321	109646280	+	0	NA	intron (NM_017918, intron 1 of 7)	L2b|LINE|L2	57645	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
109747	chr19	1110951	1111130	+	0	NA	exon (NM_014963, exon 25 of 32)	exon (NM_014963, exon 25 of 32)	6390	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
174265	chr4	38130751	38131800	+	0	NA	intron (NM_015173, intron 18 of 19)	intron (NM_015173, intron 18 of 19)	11321	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
222609	chr8	141035901	141037100	+	0	NA	Intergenic	Intergenic	-34421	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
59921	chr13	31045671	31046150	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	113254	NM_001353389	122046		NM_152325	ENSG00000175664	TEX26	C13orf26	testis expressed 26	protein-coding
121491	chr19	47137771	47137930	+	0	NA	intron (NR_027280, intron 1 of 8)	AluSz|SINE|Alu	7015	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
73525	chr15	43800271	43801230	+	0	NA	promoter-TSS (NM_001258032)	promoter-TSS (NM_001258032)	151	NM_016400	25764		NM_016400	ENSG00000242028	HYPK	C15orf63|HSPC136	huntingtin interacting protein K	protein-coding
48410	chr12	9664971	9665130	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-4663	NM_001197318	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
152746	chr22	21714251	21714550	+	0	NA	intron (NM_013313, intron 1 of 4)	intron (NM_013313, intron 1 of 4)	21394	NM_013313	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
36673	chr11	8262321	8263230	+	0	NA	intron (NM_001270428, intron 1 of 3)	CpG	1103	NR_073006	4004		NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
94717	chr17	30714471	30714630	+	0	NA	intron (NR_144394, intron 1 of 8)	MER20|DNA|hAT-Charlie	4942	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
177031	chr4	107068951	107069250	+	0	NA	Intergenic	MER8|DNA|TcMar-Tigger	-32787	NM_014421	27123		NM_014421	ENSG00000155011	DKK2	DKK-2	dickkopf WNT signaling pathway inhibitor 2	protein-coding
129038	chr2	65032251	65032780	+	0	NA	Intergenic	(CCTCAGC)n|Simple_repeat|Simple_repeat	-23901	NM_001319101	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
47048	chr12	540771	541000	+	0	NA	intron (NM_173593, intron 3 of 19)	AluY|SINE|Alu	45601	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
124150	chr19	55993371	55993550	+	0	NA	Intergenic	Intergenic	-6266	NM_153447	126206		NM_153447	ENSG00000171487	NLRP5	CLR19.8|MATER|NALP5|OZEMA19|PAN11|PYPAF8	NLR family pyrin domain containing 5	protein-coding
56024	chr12	110402901	110404280	+	0	NA	exon (NM_001137664, exon 1 of 10)	exon (NM_001137664, exon 1 of 10)	118	NM_001385211	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
146583	chr20	50104271	50105030	+	0	NA	intron (NM_001257399, intron 1 of 4)	AluYe5|SINE|Alu	8500	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
149780	chr21	34888701	34889200	+	0	NA	promoter-TSS (NM_001001890)	promoter-TSS (NM_001001890)	-251	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
237003	chrX	101931271	101932480	+	0	NA	5' UTR (NM_001282401, exon 1 of 9)	5' UTR (NM_001282401, exon 1 of 9)	152	NM_001282401	84460		NM_001011657	ENSG00000166432	ZMAT1	-	zinc finger matrin-type 1	protein-coding
86464	chr16	66943321	66944100	+	0	NA	intron (NM_198061, intron 11 of 11)	intron (NM_198061, intron 11 of 11)	8194	NM_198061	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
194257	chr6	32568301	32568780	+	0	NA	Intergenic	Intergenic	-8538	NR_001298	3128		NR_001298	ENSG00000290878	HLA-DRB6	-	major histocompatibility complex, class II, DR beta 6 (pseudogene)	pseudo
224656	chr9	20940721	20941400	+	0	NA	intron (NM_017794, intron 30 of 45)	intron (NM_017794, intron 30 of 45)	90580	NM_001321883	401494		NM_001010915	ENSG00000188921	HACD4	PTPLAD2	3-hydroxyacyl-CoA dehydratase 4	protein-coding
228178	chr9	97417101	97417300	+	0	NA	intron (NM_001302884, intron 1 of 15)	L2a|LINE|L2	5104	NM_001302884	23424		NM_014290	ENSG00000196116	TDRD7	CATC4|PCTAIRE2BP|TRAP	tudor domain containing 7	protein-coding
61957	chr13	79391251	79391700	+	0	NA	intron (NM_022118, intron 1 of 20)	AluSx1|SINE|Alu	14746	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
176274	chr4	87060701	87061430	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	54064	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
83983	chr16	29363051	29363350	+	0	NA	intron (NR_002939, intron 8 of 8)	MLT1H|LTR|ERVL-MaLR	41345	NM_001310137	728888		NM_001310137	ENSG00000254206	NPIPB11	NPIP	nuclear pore complex interacting protein family member B11	protein-coding
52137	chr12	54212701	54213380	+	0	NA	Intergenic	Intergenic	18436	NR_039851	100616400		NR_039851	ENSG00000283803	MIR3198-2	mir-3198-2	microRNA 3198-2	ncRNA
157597	chr22	46009121	46009380	+	0	NA	non-coding (NR_027240, exon 1 of 1)	non-coding (NR_027240, exon 1 of 1)	2634	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
117517	chr19	20162871	20163030	+	0	NA	Intergenic	HERVL66-int|LTR|ERVL	-4264	NM_052852	90649		NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
168901	chr3	152325951	152326250	+	0	NA	intron (NR_164857, intron 3 of 10)	L1MC5a|LINE|L1	14890	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
193737	chr6	31259901	31260650	+	0	NA	Intergenic	L1PA6|LINE|L1	11817	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
136094	chr2	173449101	173449410	+	0	NA	Intergenic	LTR41B|LTR|ERVL	94383	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
233854	chrX	1516321	1516930	+	0	NA	intron (NM_178129, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	20560	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
173283	chr4	7060701	7061580	+	0	NA	exon (NM_025196, exon 4 of 4)	exon (NM_025196, exon 4 of 4)	6924	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
12650	chr1	109253401	109254300	+	0	NA	intron (NM_001408, intron 1 of 33)	intron (NM_001408, intron 1 of 33)	4311	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
24517	chr1	244796651	244797080	+	0	NA	Intergenic	FAM|SINE|Alu	-38441	NM_001312871	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
46492	chr11	128342421	128343330	+	0	NA	Intergenic	Intergenic	134109	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
192553	chr6	25352601	25352800	+	0	NA	intron (NM_001173977, intron 2 of 36)	intron (NM_001173977, intron 2 of 36)	73326	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
143574	chr20	31668221	31668480	+	0	NA	intron (NR_134257, intron 1 of 2)	AluSz6|SINE|Alu	30438	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
224906	chr9	32548421	32548680	+	0	NA	intron (NM_001195622, intron 1 of 1)	(CA)n|Simple_repeat|Simple_repeat	-2594	NM_001349118	100129250		NM_001349118	ENSG00000235453	SMIM27	C9orf133|TOPORS-AS1	small integral membrane protein 27	protein-coding
130116	chr2	74551201	74551600	+	0	NA	intron (NM_001289164, intron 2 of 11)	intron (NM_001289164, intron 2 of 11)	-1874	NM_001289165	84695		NM_032603	ENSG00000115318	LOXL3	LOXL|MYP28	lysyl oxidase like 3	protein-coding
173912	chr4	25236351	25236650	+	0	NA	intron (NM_018323, intron 1 of 9)	AluSx1|SINE|Alu	2467	NM_018323	55300		NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
168651	chr3	150405851	150406180	+	0	NA	Intergenic	Intergenic	-2283	NM_014779	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
159781	chr3	16313401	16314230	+	0	NA	intron (NM_001352982, intron 10 of 10)	intron (NM_001352982, intron 10 of 10)	48603	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
45368	chr11	118281371	118281800	+	0	NA	Intergenic	L1MC5|LINE|L1	-17049	NM_144765	10205		NM_005797	ENSG00000149573	MPZL2	DFNB111|EVA|EVA1	myelin protein zero like 2	protein-coding
230610	chr9	128622871	128623030	+	0	NA	intron (NM_001375310, intron 45 of 57)	AluSx1|SINE|Alu	33900	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
214187	chr7	148242371	148242530	+	0	NA	intron (NM_014141, intron 19 of 22)	intron (NM_014141, intron 19 of 22)	-348316	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
3759	chr1	16669071	16669730	+	0	NA	Intergenic	Intergenic	-2452	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
100780	chr17	64004671	64005400	+	0	NA	TTS (NM_001191031)	TTS (NM_001191031)	1888	NM_000873	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
147410	chr20	58853971	58854950	+	0	NA	exon (NM_001077490, exon 1 of 13)	exon (NM_001077490, exon 1 of 13)	1479	NM_001077490	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
181008	chr5	35838451	35838950	+	0	NA	Intergenic	Intergenic	-18191	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
7192	chr1	32274801	32275000	+	0	NA	intron (NM_001042771, intron 3 of 12)	intron (NM_001042771, intron 3 of 12)	789	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
154322	chr22	32094771	32094930	+	0	NA	intron (NM_000343, intron 11 of 14)	L1PB1|LINE|L1	-27127	NR_040114	23782		NR_040114	ENSG00000290475	AP1B1P1	ADTB1L1|dJ127L4.2	AP1B1 pseudogene 1	pseudo
117760	chr19	29677971	29678130	+	0	NA	Intergenic	AluJb|SINE|Alu	12589	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
203555	chr7	891271	891900	+	0	NA	intron (NM_015949, intron 5 of 8)	intron (NM_015949, intron 5 of 8)	15031	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
45677	chr11	119040451	119040750	+	0	NA	Intergenic	AluSz6|SINE|Alu	-9694	NM_001164277	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
102103	chr17	74990121	74991100	+	0	NA	intron (NM_014603, intron 1 of 4)	L2b|LINE|L2	2978	NM_014603	30850		NM_014603	ENSG00000109089	CDR2L	HUMPPA	cerebellar degeneration related protein 2 like	protein-coding
184688	chr5	108703401	108703800	+	0	NA	Intergenic	MLT2D|LTR|ERVL	24661	NR_046368	100652853		NR_046368		LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
31297	chr10	92592501	92593480	+	0	NA	promoter-TSS (NM_004523)	promoter-TSS (NM_004523)	-140	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
129292	chr2	68466171	68466700	+	0	NA	non-coding (NR_133923, exon 2 of 2)	non-coding (NR_133923, exon 2 of 2)	859	NM_001024680	554251		NM_001024680	ENSG00000204923	FBXO48	-	F-box protein 48	protein-coding
1762	chr1	6024251	6024550	+	0	NA	intron (NM_001199861, intron 1 of 15)	L1MB3|LINE|L1	-1933	NM_172130	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
9504	chr1	51294901	51295300	+	0	NA	TTS (NM_001297662)	TTS (NM_001297662)	2861	NM_001297666	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
9736	chr1	53221821	53222400	+	0	NA	Intergenic	L1M1|LINE|L1	-1471	NM_001304759	54987		NM_017887	ENSG00000162384	CZIB	C1orf123	CXXC motif containing zinc binding protein	protein-coding
184415	chr5	98920351	98921080	+	0	NA	intron (NR_157078, intron 2 of 36)	AluSx|SINE|Alu	-7847	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
62403	chr13	99285301	99285800	+	0	NA	intron (NR_026644, intron 4 of 8)	AluJr4|SINE|Alu	21849	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
226453	chr9	71710901	71711500	+	0	NA	intron (NM_001135820, intron 15 of 22)	intron (NM_001135820, intron 15 of 22)	57313	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
185013	chr5	115298171	115298330	+	0	NA	Intergenic	AluSc5|SINE|Alu	-1596	NM_001375899	153733		NM_152549	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
58559	chr12	132342251	132342580	+	0	NA	Intergenic	Intergenic	12565	NR_120467	101928416		NR_120467	ENSG00000255916	LOC101928416	-	uncharacterized LOC101928416	ncRNA
29240	chr10	69096851	69098130	+	0	NA	intron (NM_002727, intron 2 of 2)	AluY|SINE|Alu	9387	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
16146	chr1	153677501	153678030	+	0	NA	promoter-TSS (NM_000906)	promoter-TSS (NM_000906)	-923	NM_000906	4881		NM_000906	ENSG00000169418	NPR1	ANPRA|ANPa|GUC2A|GUCY2A|NPRA	natriuretic peptide receptor 1	protein-coding
51620	chr12	52907751	52908050	+	0	NA	intron (NM_001256293, intron 1 of 8)	intron (NM_001256293, intron 1 of 8)	-2824	NM_002273	3856		NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding
171351	chr3	196056971	196057130	+	0	NA	intron (NM_001313966, intron 14 of 16)	AluSg|SINE|Alu	25040	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
220348	chr8	99495751	99496030	+	0	NA	intron (NM_152564, intron 25 of 61)	intron (NM_152564, intron 25 of 61)	40840	NR_030329	693184		NR_030329	ENSG00000207804	MIR599	MIRN599|hsa-mir-599	microRNA 599	ncRNA
152542	chr22	20994951	20995250	+	0	NA	intron (NM_006767, intron 16 of 20)	intron (NM_006767, intron 16 of 20)	-6822	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
191528	chr6	11379921	11380180	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	2298	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
117491	chr19	19815171	19815680	+	0	NA	intron (NM_001099269, intron 1 of 3)	intron (NM_001099269, intron 1 of 3)	6325	NM_001099269	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
236297	chrX	68197071	68197330	+	0	NA	exon (NM_002547, exon 12 of 25)	exon (NM_002547, exon 12 of 25)	236295	NM_002547	4983		NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|MRXSBL|OPN1	oligophrenin 1	protein-coding
157411	chr22	45008651	45009200	+	0	NA	promoter-TSS (NM_001284296)	promoter-TSS (NM_001284296)	-22	NM_001284296	112885		NM_138415	ENSG00000056487	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
106299	chr18	12844571	12845000	+	0	NA	intron (NM_080422, intron 2 of 9)	L1MD2|LINE|L1	-3823	NM_001308287	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
61435	chr13	51832371	51832900	+	0	NA	intron (NM_001351003, intron 2 of 4)	intron (NM_001351003, intron 2 of 4)	12542	NM_001351003	283521		NM_178515	ENSG00000281106	TMEM272	LINC00282|NCRNA00282	transmembrane protein 272	protein-coding
1435	chr1	2611001	2611550	+	0	NA	intron (NM_033467, intron 4 of 23)	intron (NM_033467, intron 4 of 23)	21741	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
54546	chr12	92141551	92142600	+	0	NA	promoter-TSS (NR_046159)	promoter-TSS (NR_046159)	-362	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
43445	chr11	77799321	77799580	+	0	NA	intron (NM_016578, intron 1 of 15)	AluJb|SINE|Alu	21384	NM_016578	51773		NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
38030	chr11	35145171	35145700	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	6264	NM_001001391	960		NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECM-III|ECMR-III|H-CAM|HCELL|HUTCH-1|HUTCH-I|Hermes-1|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (IN blood group)	protein-coding
55579	chr12	106305401	106306230	+	0	NA	intron (NM_152772, intron 1 of 9)	L2b|LINE|L2	3082	NM_152772	255394		NM_152772	ENSG00000166046	TCP11L2	-	t-complex 11 like 2	protein-coding
51571	chr12	52608751	52609450	+	0	NA	promoter-TSS (NR_126005)	promoter-TSS (NR_126005)	-751	NR_126005	100127967		NR_126005	ENSG00000257495	KRT73-AS1	-	KRT73 antisense RNA 1	ncRNA
179643	chr4	187603951	187604050	+	0	NA	intron (NR_110436, intron 2 of 2)	(CCTCT)n|Simple_repeat|Simple_repeat	68641	NR_110436	100506272		NR_110436	ENSG00000250590	LINC02492	-	long intergenic non-protein coding RNA 2492	ncRNA
78463	chr15	92886071	92886730	+	0	NA	intron (NR_037600, intron 3 of 4)	intron (NR_037600, intron 3 of 4)	3104	NR_037602	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
45924	chr11	120929521	120929830	+	0	NA	intron (NM_001282473, intron 13 of 17)	intron (NM_001282473, intron 13 of 17)	28364	NR_133004	101929208		NR_133004		LOC101929208	-	uncharacterized LOC101929208	ncRNA
132863	chr2	111050801	111051430	+	0	NA	intron (NM_001371254, intron 17 of 18)	intron (NM_001371254, intron 17 of 18)	64473	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
19516	chr1	175319501	175319990	+	0	NA	3' UTR (NM_003285, exon 23 of 23)	3' UTR (NM_003285, exon 23 of 23)	-126758	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
8390	chr1	40387571	40387800	+	0	NA	intron (NM_001198978, intron 1 of 9)	LTR12C|LTR|ERV1	-5660	NM_001198979	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
182742	chr5	68273971	68274330	+	0	NA	intron (NM_181523, intron 4 of 15)	intron (NM_181523, intron 4 of 15)	-14369	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
119945	chr19	41870251	41870800	+	0	NA	TTS (NR_106855)	TTS (NR_106855)	898	NR_106855	102465478		NR_106855	ENSG00000276926	MIR6797	hsa-mir-6797	microRNA 6797	ncRNA
178475	chr4	148434501	148435080	+	0	NA	intron (NR_148974, intron 2 of 6)	intron (NR_148974, intron 2 of 6)	7624	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
236122	chrX	57586971	57587500	+	0	NA	Intergenic	Intergenic	-4776	NM_007157	158586		NM_007157	ENSG00000198455	ZXDB	ZNF905|dJ83L6.1	zinc finger X-linked duplicated B	protein-coding
171678	chr3	197736121	197737830	+	0	NA	promoter-TSS (NM_001346873)	promoter-TSS (NM_001346873)	-49	NM_001346873	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
207231	chr7	43699671	43701100	+	0	NA	intron (NM_001321199, intron 1 of 6)	intron (NM_001321199, intron 1 of 6)	29138	NR_135580	55744		NM_018224	ENSG00000106603	COA1	C7orf44|MITRAC15	cytochrome c oxidase assembly factor 1	protein-coding
2666	chr1	10500221	10500480	+	0	NA	intron (NM_004565, intron 2 of 8)	AluSx1|SINE|Alu	25400	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
48657	chr12	10431551	10431650	+	0	NA	intron (NM_002260, intron 5 of 5)	MER44B|DNA|TcMar-Tigger	4393	NM_002260	3822		NM_002260	ENSG00000205809	KLRC2	CD159c|NKG2-C|NKG2C	killer cell lectin like receptor C2	protein-coding
216439	chr8	19472021	19472280	+	0	NA	intron (NR_148900, intron 3 of 9)	intron (NR_148900, intron 3 of 9)	130395	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
30079	chr10	73881921	73882380	+	0	NA	Intergenic	AluSx|SINE|Alu	-7559	NM_172171	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
160148	chr3	20100471	20100630	+	0	NA	intron (NM_003884, intron 4 of 17)	intron (NM_003884, intron 4 of 17)	-37015	NR_036086	100422901		NR_036086	ENSG00000266745	MIR3135A	MIR3135|hsa-mir-3135a	microRNA 3135a	ncRNA
199220	chr6	111807421	111807780	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-47683	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
42259	chr11	68144801	68145200	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-23612	NM_001376220	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
205463	chr7	17274571	17274930	+	0	NA	Intergenic	Intergenic	-23902	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
85863	chr16	57032851	57033180	+	0	NA	intron (NM_001384955, intron 11 of 47)	intron (NM_001384955, intron 11 of 47)	43458	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
129127	chr2	65265071	65265550	+	0	NA	intron (NM_005722, intron 8 of 8)	intron (NM_005722, intron 8 of 8)	37479	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
204065	chr7	2018271	2019000	+	0	NA	intron (NM_001304524, intron 10 of 16)	intron (NM_001304524, intron 10 of 16)	70417	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
185319	chr5	126785301	126785500	+	0	NA	intron (NR_134488, intron 1 of 11)	AluSx|SINE|Alu	8264	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
198930	chr6	110366951	110367430	+	0	NA	Intergenic	Intergenic	-8918	NM_001123364	728464		NM_001123364	ENSG00000053328	METTL24	C6orf186	methyltransferase like 24	protein-coding
130733	chr2	86782501	86783080	+	0	NA	Intergenic	AluJo|SINE|Alu	8123	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
116108	chr19	17300901	17301680	+	0	NA	exon (NM_024527, exon 2 of 5)	exon (NM_024527, exon 2 of 5)	-1575	NM_001382342	64981		NM_023937	ENSG00000130312	MRPL34	L34mt|bL34m	mitochondrial ribosomal protein L34	protein-coding
178562	chr4	151113201	151113500	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	9523	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
201881	chr6	150817621	150818030	+	0	NA	intron (NM_001329799, intron 10 of 15)	AluSx1|SINE|Alu	-47854	NR_146719	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
98839	chr17	48429821	48431400	+	0	NA	promoter-TSS (NM_003726)	promoter-TSS (NM_003726)	-396	NM_001075099	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
168378	chr3	141917601	141917800	+	0	NA	intron (NM_001679, intron 5 of 6)	intron (NM_001679, intron 5 of 6)	41057	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
161937	chr3	46106801	46107000	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-21056	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
179744	chr5	235771	236380	+	0	NA	intron (NM_001330758, intron 9 of 12)	AluSx1|SINE|Alu	17755	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
189581	chr5	175519971	175520750	+	0	NA	intron (NM_001322978, intron 8 of 10)	intron (NM_001322978, intron 8 of 10)	41800	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
69411	chr14	94058271	94059100	+	0	NA	intron (NM_020414, intron 5 of 8).2	intron (NM_020414, intron 5 of 8).2	22517	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
237309	chrX	116519971	116520230	+	0	NA	Intergenic	L1PA3|LINE|L1	-57124	NM_001017978	203413		NM_001017978	ENSG00000204019	CT83	CXorf61|KK-LC-1|KKLC1	cancer/testis antigen 83	protein-coding
107307	chr18	44842971	44843330	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	127016	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
26089	chr10	13163251	13163350	+	0	NA	intron (NM_182751, intron 1 of 19)	AluSz|SINE|Alu	1742	NM_018518	55388		NM_018518	ENSG00000065328	MCM10	CNA43|DNA43|IMD80|PRO2249	minichromosome maintenance 10 replication initiation factor	protein-coding
130634	chr2	86079921	86081180	+	0	NA	intron (NM_015425, intron 9 of 33)	intron (NM_015425, intron 9 of 33)	25336	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
222812	chr8	142460051	142460550	+	0	NA	intron (NM_001702, intron 1 of 30)	intron (NM_001702, intron 1 of 30)	10651	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
208811	chr7	73631221	73631480	+	0	NA	Intergenic	L1ME3A|LINE|L1	-6828	NM_032952	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
6248	chr1	27555521	27556300	+	0	NA	intron (NM_001029882, intron 3 of 6)	intron (NM_001029882, intron 3 of 6)	47584	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
88018	chr16	81015051	81015350	+	0	NA	intron (NM_001270473, intron 3 of 9)	intron (NM_001270473, intron 3 of 9)	-8315	NR_147842	56942		NM_020188	ENSG00000103121	CMC2	2310061C15Rik|C16orf61|DC13	C-X9-C motif containing 2	protein-coding
35946	chr11	2527821	2528080	+	0	NA	exon (NM_000218, exon 2 of 16)	exon (NM_000218, exon 2 of 16)	66496	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
219195	chr8	66611501	66611700	+	0	NA	intron (NM_001294282, intron 1 of 14)	MER20|DNA|hAT-Charlie	1618	NM_001144755	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
74106	chr15	52801321	52801980	+	0	NA	Intergenic	Intergenic	-11314	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
34979	chr11	508671	509730	+	0	NA	Intergenic	MIRb|SINE|MIR	-1958	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
21857	chr1	207470801	207471200	+	0	NA	exon (NM_001006658, exon 8 of 20)	exon (NM_001006658, exon 8 of 20)	16672	NM_001006658	1380		NM_001877	ENSG00000117322	CR2	C3DR|CD21|CR|CVID7|SLEB9	complement C3d receptor 2	protein-coding
94209	chr17	28601371	28601780	+	0	NA	intron (NR_040012, intron 2 of 2)	AluSz|SINE|Alu	2442	NR_040012	100506436		NR_040012		SPAG5-AS1	-	SPAG5 antisense RNA 1	ncRNA
208536	chr7	70660251	70661480	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-471279	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
187797	chr5	146290421	146290680	+	0	NA	Intergenic	Intergenic	-48289	NM_002700	5459		NM_002700	ENSG00000091010	POU4F3	BRN3C|DFNA15|DFNA42|DFNA52	POU class 4 homeobox 3	protein-coding
90870	chr17	2375571	2375730	+	0	NA	exon (NM_001098509, exon 17 of 23)	exon (NM_001098509, exon 17 of 23)	25410	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
60534	chr13	41454001	41454780	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-3160	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
27479	chr10	32051071	32051550	+	0	NA	intron (NM_004521, intron 1 of 25)	AluSz6|SINE|Alu	5115	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
68102	chr14	75303351	75304500	+	0	NA	Intergenic	AluJo|SINE|Alu	9521	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
184293	chr5	96815371	96815530	+	0	NA	Intergenic	AluSp|SINE|Alu	-1305	NM_001198541	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
153824	chr22	29821371	29821530	+	0	NA	intron (NM_001369944, intron 2 of 16)	MIRb|SINE|MIR	16824	NM_001369933	84164		NM_032204	ENSG00000100325	ASCC2	ASC1p100|p100	activating signal cointegrator 1 complex subunit 2	protein-coding
218886	chr8	60613751	60614130	+	0	NA	intron (NM_002865, intron 6 of 7)	intron (NM_002865, intron 6 of 7)	-64800	NM_017780	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
107801	chr18	51183621	51184150	+	0	NA	intron (NM_016626, intron 1 of 1)	AluJr|SINE|Alu	13796	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
145735	chr20	45064971	45065330	+	0	NA	intron (NM_001352385, intron 11 of 11)	L1PA15|LINE|L1	35977	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
75050	chr15	64159051	64159300	+	0	NA	intron (NM_000942, intron 3 of 4)	intron (NM_000942, intron 3 of 4)	3847	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
109768	chr19	1127171	1127630	+	0	NA	intron (NM_001100122, intron 2 of 28).2	MER20|DNA|hAT-Charlie	4821	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
81673	chr16	11094101	11094900	+	0	NA	intron (NM_001243403, intron 18 of 20)	intron (NM_001243403, intron 18 of 20)	149936	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
196392	chr6	43277521	43277780	+	0	NA	intron (NM_032538, intron 13 of 14)	(CTTCCC)n|Simple_repeat|Simple_repeat	-20610	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
149852	chr21	35052701	35053300	+	0	NA	Intergenic	Intergenic	-3698	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
131389	chr2	96258101	96258900	+	0	NA	intron (NM_017849, intron 2 of 3)	intron (NM_017849, intron 2 of 3)	7497	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
201387	chr6	145704271	145704430	+	0	NA	intron (NR_153398, intron 1 of 2)	intron (NR_153398, intron 1 of 2)	-17473	NM_001368132	7957		NM_005670	ENSG00000112425	EPM2A	EPM2|MELF|MELF2	EPM2A glucan phosphatase, laforin	protein-coding
211816	chr7	108047971	108048130	+	0	NA	exon (NM_001318046, exon 28 of 34)	exon (NM_001318046, exon 28 of 34)	-44889	NM_002291	3912		NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding
48912	chr12	12607201	12607600	+	0	NA	Intergenic	Intergenic	-4476	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
73656	chr15	44714401	44715050	+	0	NA	intron (NM_004048, intron 1 of 3)	AluSz|SINE|Alu	-3119	NR_162102	113218500		NR_162102		MIR10393	-	microRNA 10393	ncRNA
166626	chr3	119559401	119560380	+	0	NA	promoter-TSS (NM_005191)	promoter-TSS (NM_005191)	-276	NM_005191	941		NM_005191	ENSG00000121594	CD80	B7|B7-1|B7.1|BB1|CD28LG|CD28LG1|LAB7	CD80 molecule	protein-coding
182597	chr5	66016401	66016600	+	0	NA	intron (NM_001253697, intron 7 of 25)	L1MA4|LINE|L1	-70927	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
138319	chr2	203749501	203749830	+	0	NA	Intergenic	Intergenic	43026	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123519	chr19	54222601	54223600	+	0	NA	promoter-TSS (NM_001320960).8	promoter-TSS (NM_001320960).8	-93	NR_135496	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
44005	chr11	94661471	94661630	+	0	NA	intron (NR_135096, intron 4 of 6)	L2a|LINE|L2	78805	NR_135094	105369438		NR_135093	ENSG00000255929	PIWIL4-AS1	-	PIWIL4 antisense RNA 1	ncRNA
208317	chr7	66123871	66124430	+	0	NA	intron (NM_001040648, intron 1 of 2)	AluY|SINE|Alu	9303	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
25358	chr10	6403151	6403450	+	0	NA	intron (NM_001323267, intron 17 of 17)	intron (NM_001323267, intron 17 of 17)	52984	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
181464	chr5	41923601	41923930	+	0	NA	Intergenic	L1MC5|LINE|L1	-1487	NM_001297437	26272		NM_012176	ENSG00000151876	FBXO4	FBX4	F-box protein 4	protein-coding
126577	chr2	28755201	28755680	+	0	NA	intron (NM_206876, intron 2 of 8)	intron (NM_206876, intron 2 of 8)	3610	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
69150	chr14	92563201	92564000	+	0	NA	intron (NM_024832, intron 2 of 9)	MIRb|SINE|MIR	-12634	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
155184	chr22	37791871	37792030	+	0	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	-13279	NM_005318	3005		NM_005318	ENSG00000189060	H1-0	H1.0|H10|H1F0|H1FV	H1.0 linker histone	protein-coding
101030	chr17	64786171	64786750	+	0	NA	intron (NR_024386, intron 10 of 10)	intron (NR_024386, intron 10 of 10)	-4461	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
211531	chr7	105354621	105355100	+	0	NA	intron (NM_001350742, intron 2 of 16)	L1MB8|LINE|L1	34061	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
187542	chr5	142757371	142757830	+	0	NA	intron (NR_110558, intron 2 of 3)	L2a|LINE|L2	12000	NR_110558	101926975		NR_110558	ENSG00000236714	LINC01844	-	long intergenic non-protein coding RNA 1844	ncRNA
33911	chr10	124595101	124595300	+	0	NA	intron (NM_022126, intron 6 of 6)	intron (NM_022126, intron 6 of 6)	-108828	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
164423	chr3	58816751	58816850	+	0	NA	intron (NM_001351531, intron 13 of 15)	L1PA2|LINE|L1	-7671	NR_110820	101929238		NR_110820	ENSG00000242428	CFAP20DC-AS1	C3orf67-AS1	CFAP20DC antisense RNA 1	ncRNA
239465	chrY	56724571	56725580	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-229180	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
165025	chr3	71400751	71401250	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-96229	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
182411	chr5	61344601	61345000	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	12542	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
56394	chr12	113204171	113204530	+	0	NA	intron (NM_001330452, intron 2 of 4)	L2c|LINE|L2	16744	NM_001330452	115811		NM_138451	ENSG00000166578	IQCD	4933433C09Rik|CFAP84|DRC10	IQ motif containing D	protein-coding
140768	chr2	234888471	234888830	+	0	NA	Intergenic	L1PA2|LINE|L1	-63367	NM_014521	23677		NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding
110418	chr19	1962001	1962200	+	0	NA	intron (NM_001319, intron 1 of 11)	AluSg7|SINE|Alu	-7551	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
150498	chr21	42786271	42786430	+	0	NA	Intergenic	Intergenic	-6356	NR_135517	101928311		NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
93539	chr17	19048801	19049200	+	0	NA	Intergenic	Intergenic	-2043	NM_001330148	10750		NM_006613	ENSG00000154016	GRAP	DFNB114	GRB2 related adaptor protein	protein-coding
60115	chr13	38351301	38351900	+	0	NA	intron (NM_001286704, intron 2 of 5)	L2|LINE|L2	1749	NM_016617	51569		NM_016617	ENSG00000120686	UFM1	BM-002|C13orf20|HLD14	ubiquitin fold modifier 1	protein-coding
100852	chr17	64148121	64148850	+	0	NA	3' UTR (NM_018469, exon 12 of 12)	3' UTR (NM_018469, exon 12 of 12)	2146	NR_002995	677842		NR_002995	ENSG00000277887	SNORA50C	ACA62|SNORA76|SNORA76C	small nucleolar RNA, H/ACA box 50C	snoRNA
234352	chrX	15471001	15471300	+	0	NA	intron (NR_037859, intron 2 of 14)	MER20|DNA|hAT-Charlie	20159	NR_037859	100532742		NR_037859		PIR-FIGF	-	PIR-FIGF readthrough	ncRNA
8044	chr1	38558051	38558380	+	0	NA	Intergenic	Intergenic	83019	NR_146761	105378656		NR_146761		LINC01685	-	long intergenic non-protein coding RNA 1685	ncRNA
93768	chr17	20121471	20122050	+	0	NA	intron (NM_001033553, intron 3 of 14)	intron (NM_001033553, intron 3 of 14)	-34312	NM_001033555	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
170983	chr3	194594371	194595280	+	0	NA	intron (NM_138399, intron 9 of 10)	intron (NM_138399, intron 9 of 10)	10557	NR_047574	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
173698	chr4	15653271	15653930	+	0	NA	intron (NM_012161, intron 1 of 10)	intron (NM_012161, intron 1 of 10)	1757	NM_012161	26234		NM_012161	ENSG00000118564	FBXL5	FBL4|FBL5|FLR1	F-box and leucine rich repeat protein 5	protein-coding
42779	chr11	72756351	72756450	+	0	NA	intron (NM_006645, intron 5 of 6)	(TCAC)n|Simple_repeat|Simple_repeat	-4011	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
64799	chr14	34876271	34876430	+	0	NA	promoter-TSS (NM_182648)	promoter-TSS (NM_182648)	-990	NM_013448	11177		NM_013448	ENSG00000198604	BAZ1A	ACF1|WALp1|WCRF180|hACF1	bromodomain adjacent to zinc finger domain 1A	protein-coding
92055	chr17	7504621	7505280	+	0	NA	intron (NM_000937, intron 19 of 29)	AluSp|SINE|Alu	20584	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
27600	chr10	32795601	32795900	+	0	NA	intron (NM_001321115, intron 30 of 43)	L1M3f|LINE|L1	105722	NR_132768	106633814		NR_132768		SNORA86	-	small nucleolar RNA, H/ACA box 86	snoRNA
40905	chr11	65150421	65151050	+	0	NA	Intergenic	MIRc|SINE|MIR	-16216	NM_032431	84447		NM_032431	ENSG00000162298	SYVN1	DER3|HRD1	synoviolin 1	protein-coding
110685	chr19	2278451	2279200	+	0	NA	exon (NM_198532, exon 3 of 4)	exon (NM_198532, exon 3 of 4)	3350	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
170212	chr3	184152151	184152500	+	0	NA	Intergenic	AluSc|SINE|Alu	-3052	NM_004423	1857		NM_004423	ENSG00000161202	DVL3	DRS3	dishevelled segment polarity protein 3	protein-coding
14293	chr1	143788901	143789300	+	0	NA	Intergenic	Intergenic	-3395	NR_111933	388692		NM_001013644		LINC02591	-	long intergenic non-protein coding RNA 2591	ncRNA
142838	chr20	17566151	17566250	+	0	NA	intron (NM_001278608, intron 1 of 9)	intron (NM_001278608, intron 1 of 9)	3020	NM_001278608	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
107665	chr18	49031451	49032200	+	0	NA	intron (NR_148999, intron 3 of 4)	MIR3|SINE|MIR	8122	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
231219	chr9	129960821	129961280	+	0	NA	intron (NM_001363755, intron 4 of 15)	AluSx|SINE|Alu	82139	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
61612	chr13	73625471	73626380	+	0	NA	Intergenic	Intergenic	61681	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
59174	chr13	21987871	21988030	+	0	NA	Intergenic	Intergenic	-109790	NR_047040	100874182		NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
101217	chr17	65584451	65584950	+	0	NA	Intergenic	Intergenic	-23052	NM_004655	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
197904	chr6	89360371	89360900	+	0	NA	Intergenic	Intergenic	-7913	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
134704	chr2	144500621	144501050	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-18779	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
79685	chr16	1258601	1259480	+	0	NA	TTS (NM_012217)	TTS (NM_012217)	2971	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
74939	chr15	63763301	63764130	+	0	NA	intron (NM_003922, intron 3 of 77)	L1ME3B|LINE|L1	70233	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
140796	chr2	235998951	235999450	+	0	NA	intron (NM_001037131, intron 13 of 17)	(GATGGT)n|Simple_repeat|Simple_repeat	169186	NM_001301687	2637		NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
150466	chr21	42532921	42533180	+	0	NA	intron (NM_018964, intron 4 of 20)	intron (NM_018964, intron 4 of 20)	19198	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
228062	chr9	96100601	96100800	+	0	NA	intron (NR_033838, intron 7 of 8)	intron (NR_033838, intron 7 of 8)	15711	NR_132344	158434		NM_001256408	ENSG00000275465	LOC158434	-	uncharacterized LOC158434	ncRNA
202061	chr6	154219751	154220250	+	0	NA	intron (NM_001130700, intron 7 of 11)	(GT)n|Simple_repeat|Simple_repeat	110081	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
203632	chr7	962971	964650	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-8403	NM_001284308	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
112560	chr19	6588471	6589050	+	0	NA	intron (NM_001330332, intron 2 of 3)	L2a|LINE|L2	2390	NM_001330332	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
173666	chr4	14856471	14856630	+	0	NA	intron (NR_126435, intron 2 of 6)	intron (NR_126435, intron 2 of 6)	31619	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
136406	chr2	176151701	176152180	+	0	NA	exon (NM_014621, exon 1 of 2)	exon (NM_014621, exon 1 of 2)	390	NM_014621	3233		NM_014621	ENSG00000170166	HOXD4	HHO.C13|HOX-5.1|HOX4|HOX4B|Hox-4.2	homeobox D4	protein-coding
171857	chr4	731371	732530	+	0	NA	intron (NM_006315, intron 3 of 10)	CpG-20748	26118	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
197654	chr6	85372271	85372430	+	0	NA	Intergenic	Intergenic	17836	NR_134634	101928820		NR_134633	ENSG00000234155	LINC02535	-	long intergenic non-protein coding RNA 2535	ncRNA
4665	chr1	22420201	22420750	+	0	NA	Intergenic	Intergenic	-31376	NM_014870	9923		NM_014870	ENSG00000184677	ZBTB40	ZNF923	zinc finger and BTB domain containing 40	protein-coding
28667	chr10	60434471	60434630	+	0	NA	intron (NM_001204403, intron 2 of 43)	intron (NM_001204403, intron 2 of 43)	-44675	NM_001320874	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
238289	chrX	149482521	149483200	+	0	NA	exon (NM_000202, exon 9 of 9)	exon (NM_000202, exon 9 of 9)	22446	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
95192	chr17	35216101	35216580	+	0	NA	Intergenic	L2|LINE|L2	-21947	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
157742	chr22	46614071	46615980	+	0	NA	intron (NM_001366660, intron 1 of 17)	intron (NM_001366660, intron 1 of 17)	-5361	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
108287	chr18	63312271	63312630	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	7319	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
96300	chr17	39954221	39954800	+	0	NA	Intergenic	Intergenic	-8494	NM_178171	284110		NM_178171	ENSG00000167914	GSDMA	FKSG9|GSDM|GSDM1	gasdermin A	protein-coding
22269	chr1	212696801	212697430	+	0	NA	intron (NM_018664, intron 1 of 2)	intron (NM_018664, intron 1 of 2)	2725	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
156152	chr22	40182821	40183550	+	0	NA	intron (NM_015088, intron 1 of 20)	MIRb|SINE|MIR	5260	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
74288	chr15	57708771	57709480	+	0	NA	exon (NM_015532, exon 2 of 4)	exon (NM_015532, exon 2 of 4)	2411	NM_015532	81488		NM_015532	ENSG00000255529	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	RNA polymerase II subunit M	protein-coding
112689	chr19	7060021	7060380	+	0	NA	Intergenic	L1MEg|LINE|L1	-1566	NM_001164425	653657		NM_001164425	ENSG00000182315	MBD3L3	-	methyl-CpG binding domain protein 3 like 3	protein-coding
112717	chr19	7195251	7195350	+	0	NA	intron (NM_001079817, intron 2 of 20)	L1MC4|LINE|L1	99114	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
127056	chr2	37322351	37322800	+	0	NA	intron (NM_005813, intron 1 of 18)	intron (NM_005813, intron 1 of 18)	2258	NM_005813	23683		NM_005813	ENSG00000115825	PRKD3	EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU	protein kinase D3	protein-coding
152797	chr22	21837301	21837500	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	30245	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
131083	chr2	88880401	88880650	+	0	NA	Intergenic	Intergenic	68155	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
142467	chr20	4148551	4150080	+	0	NA	intron (NM_175840, intron 1 of 7)	CpG	487	NM_175839	54498		NM_019025	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
20644	chr1	200036401	200036800	+	0	NA	intron (NM_003822, intron 1 of 6)	intron (NM_003822, intron 1 of 6)	-6225	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
10737	chr1	76228271	76228630	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	153704	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
36505	chr11	6407351	6407450	+	0	NA	intron (NR_047512, intron 2 of 13)	intron (NR_047512, intron 2 of 13)	-1737	NM_001257320	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
87942	chr16	79490621	79491080	+	0	NA	Intergenic	Intergenic	109887	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
134603	chr2	144331731	144332900	+	0	NA	promoter-TSS (NM_001376330)	promoter-TSS (NM_001376330)	-81	NR_164809	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
208084	chr7	56096421	56097280	+	0	NA	Intergenic	AluSz|SINE|Alu	-3854	NR_047689	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
128969	chr2	64651701	64651900	+	0	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	2113	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
70039	chr14	100109321	100110300	+	0	NA	promoter-TSS (NR_039601)	promoter-TSS (NR_039601)	155	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
175141	chr4	55401801	55402000	+	0	NA	intron (NM_018475, intron 1 of 5)	AluSq|SINE|Alu	5943	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
137161	chr2	191093201	191094050	+	0	NA	intron (NM_003151, intron 3 of 23)	L1PA6|LINE|L1	57369	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
28378	chr10	47301101	47301300	+	0	NA	intron (NM_004962, intron 1 of 2)	intron (NM_004962, intron 1 of 2)	1003	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
109796	chr19	1152571	1153150	+	0	NA	intron (NM_014963, intron 2 of 31)	intron (NM_014963, intron 2 of 31)	-20639	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
141594	chr2	241631001	241631200	+	0	NA	intron (NM_015963, intron 2 of 5)	intron (NM_015963, intron 2 of 5)	6058	NM_015963	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
117336	chr19	19527371	19527530	+	0	NA	intron (NM_015965, intron 3 of 4)	intron (NM_015965, intron 3 of 4)	-1461	NM_001190328	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
201014	chr6	141328021	141328280	+	0	NA	Intergenic	AluSc|SINE|Alu	644336	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
53859	chr12	69985751	69985850	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	160573	NM_182530	196446		NM_182530	ENSG00000166268	MYRFL	C12orf15|C12orf28|bcm1377	myelin regulatory factor like	protein-coding
52339	chr12	54990801	54991980	+	0	NA	Intergenic	Intergenic	-6628	NM_001136030	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
196143	chr6	42434451	42434550	+	0	NA	intron (NM_033502, intron 2 of 17)	L1MEg|LINE|L1	17551	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
37154	chr11	13665471	13665630	+	0	NA	Intergenic	AluY|SINE|Alu	-3118	NM_032228	84188		NM_032228	ENSG00000197601	FAR1	CSPSD|MLSTD2|PFCRD|SDR10E1	fatty acyl-CoA reductase 1	protein-coding
41867	chr11	67213121	67213780	+	0	NA	intron (NM_012308, intron 6 of 20)	intron (NM_012308, intron 6 of 20)	-26564	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
145869	chr20	45937171	45937350	+	0	NA	intron (NM_022104, intron 1 of 16)	intron (NM_022104, intron 1 of 16)	2577	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
71566	chr14	106395451	106395950	+	0	NA	Intergenic	MER65A|LTR|ERV1	-86739	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
25196	chr10	5665901	5667230	+	0	NA	promoter-TSS (NM_024701)	promoter-TSS (NM_024701)	30	NR_024581	79754		NM_024701	ENSG00000196372	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
72162	chr15	29114651	29115430	+	0	NA	intron (NM_001353793, intron 12 of 12).2	intron (NM_001353793, intron 12 of 12).2	44382	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
138013	chr2	201271501	201271700	+	0	NA	non-coding (NR_111983, exon 3 of 9)	non-coding (NR_111983, exon 3 of 9)	11064	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
134953	chr2	151824901	151825300	+	0	NA	intron (NM_177985, intron 1 of 5)	L2a|LINE|L2	3321	NM_012097	26225		NM_012097	ENSG00000162980	ARL5A	ARFLP5|ARL5	ADP ribosylation factor like GTPase 5A	protein-coding
189306	chr5	172135801	172136000	+	0	NA	intron (NM_005990, intron 2 of 18)	AluSx|SINE|Alu	52324	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
218507	chr8	52838151	52838850	+	0	NA	Intergenic	Intergenic	-100682	NM_005285	2831		NM_005285	ENSG00000288611	NPBWR1	GPR7	neuropeptides B and W receptor 1	protein-coding
197753	chr6	87195801	87196000	+	0	NA	intron (NM_015021, intron 1 of 7)	AluSx|SINE|Alu	40335	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
78070	chr15	90191401	90192500	+	0	NA	promoter-TSS (NM_001324031)	promoter-TSS (NM_001324031)	29	NM_001324031	10509		NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
126320	chr2	27326451	27326550	+	0	NA	3' UTR (NM_001035521, exon 19 of 19)	3' UTR (NM_001035521, exon 19 of 19)	-3403	NM_002437	4358		NM_002437	ENSG00000115204	MPV17	CMT2EE|MTDPS6|SYM1	mitochondrial inner membrane protein MPV17	protein-coding
202684	chr6	158797401	158797600	+	0	NA	intron (NM_003379, intron 1 of 12)	intron (NM_003379, intron 1 of 12)	-20479	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
20145	chr1	192579301	192579780	+	0	NA	3' UTR (NM_002922, exon 5 of 5)	3' UTR (NM_002922, exon 5 of 5)	3767	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
131761	chr2	98469771	98469930	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	23840	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
34325	chr10	132163371	132164180	+	0	NA	intron (NM_001323090, intron 20 of 23)	intron (NM_001323090, intron 20 of 23)	-23173	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
27973	chr10	42665321	42665580	+	0	NA	Intergenic	L1PA4|LINE|L1	26309	NR_120658	101929397		NR_120656	ENSG00000233515	LINC01518	-	long intergenic non-protein coding RNA 1518	ncRNA
211912	chr7	112398321	112399380	+	0	NA	Intergenic	Intergenic	-24294	NM_001197080	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
125773	chr2	23614701	23614930	+	0	NA	intron (NM_052920, intron 3 of 13)	L2a|LINE|L2	229636	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
1256	chr1	2298451	2299300	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	53786	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
95508	chr17	36484951	36485400	+	0	NA	Intergenic	Intergenic	-1452	NR_104009	9326		NM_004773	ENSG00000273611	ZNHIT3	Hit1|PEHO|TRIP3	zinc finger HIT-type containing 3	protein-coding
34473	chr10	132458521	132459880	+	0	NA	Intergenic	Intergenic	14011	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
214135	chr7	144295321	144295980	+	0	NA	intron (NR_126022, intron 3 of 4).3	intron (NR_126022, intron 3 of 4).3	-3723	NR_002158	401428		NR_002158	ENSG00000170356	OR2A20P	OR2A20	olfactory receptor family 2 subfamily A member 20 pseudogene	pseudo
211283	chr7	103072221	103072750	+	0	NA	intron (NM_001111038, intron 1 of 18)	intron (NM_001111038, intron 1 of 18)	2083	NM_145032	222235		NM_145032	ENSG00000161040	FBXL13	CFAP169|DRC6|Fbl13	F-box and leucine rich repeat protein 13	protein-coding
149606	chr21	33347601	33347950	+	0	NA	intron (NM_001384501, intron 6 of 10)	MLT1E|LTR|ERVL-MaLR	22805	NM_001384503	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
163565	chr3	51891721	51891980	+	0	NA	Intergenic	Intergenic	11503	NM_152397	132141		NM_152397	ENSG00000173389	IQCF1	-	IQ motif containing F1	protein-coding
37655	chr11	22670871	22671030	+	0	NA	intron (NM_177553, intron 1 of 7)	intron (NM_177553, intron 1 of 7)	2842	NM_177553	2620		NM_005256	ENSG00000148935	GAS2	GAS-2	growth arrest specific 2	protein-coding
218982	chr8	61748471	61748630	+	0	NA	Intergenic	Intergenic	33762	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
195076	chr6	35534501	35534700	+	0	NA	Intergenic	L2|LINE|L2	-21704	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
132613	chr2	108607701	108608380	+	0	NA	intron (NM_001193482, intron 1 of 9)	L1ME3C|LINE|L1	893	NM_001193482	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
446	chr1	1121801	1122830	+	0	NA	Intergenic	Intergenic	-6226	NM_001330306	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
208805	chr7	73622801	73623530	+	0	NA	intron (NR_134541, intron 1 of 15)	intron (NR_134541, intron 1 of 15)	1357	NM_032953	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
191153	chr6	4773071	4773630	+	0	NA	intron (NM_001368125, intron 3 of 8)	intron (NM_001368125, intron 3 of 8)	-3054	NM_001368127	9425		NM_004824	ENSG00000153046	CDYL	CDYL1	chromodomain Y like	protein-coding
41207	chr11	65657251	65657980	+	0	NA	intron (NM_001243984, intron 8 of 10)	L2c|LINE|L2	5301	NM_021975	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
58080	chr12	124565121	124565450	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	2327	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
114707	chr19	13151101	13152400	+	0	NA	intron (NM_004907, intron 1 of 1)	CpG	1339	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
218213	chr8	42020351	42020650	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-31250	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
131490	chr2	96525421	96525680	+	0	NA	Intergenic	Intergenic	6756	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
193785	chr6	31396821	31397450	+	0	NA	intron (NR_148222, intron 1 of 1)	intron (NR_148222, intron 1 of 1)	1373	NR_148223	101929072		NR_148222		MICA-AS1	-	MICA antisense RNA 1	ncRNA
149956	chr21	36380751	36380850	+	0	NA	Intergenic	AluJb|SINE|Alu	-4592	NM_005441	8208		NM_005441	ENSG00000159259	CHAF1B	CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7	chromatin assembly factor 1 subunit B	protein-coding
23064	chr1	226633601	226634630	+	0	NA	3' UTR (NM_002221, exon 8 of 8)	3' UTR (NM_002221, exon 8 of 8)	40953	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
101503	chr17	67689451	67689850	+	0	NA	intron (NM_181671, intron 9 of 9)	intron (NM_181671, intron 9 of 9)	-28183	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
85726	chr16	56640951	56641600	+	0	NA	Intergenic	Intergenic	-2412	NR_027781	326343		NM_175620	ENSG00000291095	MT1DP	MTM	metallothionein 1D, pseudogene	pseudo
14744	chr1	145995471	145995730	+	0	NA	5' UTR (NM_001313972, exon 1 of 7)	5' UTR (NM_001313972, exon 1 of 7)	144	NM_001313972	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
24637	chr1	246724021	246725030	+	0	NA	exon (NM_016002, exon 1 of 12)	exon (NM_016002, exon 1 of 12)	116	NM_016002	51097		NM_016002	ENSG00000143653	SCCPDH	CGI-49|NET11	saccharopine dehydrogenase (putative)	protein-coding
4750	chr1	23486671	23487450	+	0	NA	Intergenic	AluSp|SINE|Alu	-2881	NM_017707	55616		NM_017707	ENSG00000088280	ASAP3	ACAP4|CENTB6|DDEFL1|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding
59675	chr13	28755201	28755400	+	0	NA	Intergenic	Intergenic	-36287	NM_001347960	283537		NM_181785	ENSG00000139508	SLC46A3	FKSG16	solute carrier family 46 member 3	protein-coding
196675	chr6	44561251	44561750	+	0	NA	Intergenic	Intergenic	-9619	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
88703	chr16	85834151	85834250	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	34505	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
213351	chr7	135569801	135570380	+	0	NA	intron (NM_001329434, intron 1 of 42)	(AG)n|Simple_repeat|Simple_repeat	12173	NM_015135	23165		NM_015135	ENSG00000155561	NUP205	C7orf14|NPHS13	nucleoporin 205	protein-coding
223304	chr8	143804201	143804680	+	0	NA	intron (NM_182706, intron 21 of 36).2	intron (NM_182706, intron 21 of 36).2	8602	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
238504	chrX	153643751	153644900	+	0	NA	intron (NM_001395, intron 1 of 3)	CpG	1884	NM_001395	1852		NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
125674	chr2	20242201	20243030	+	0	NA	Intergenic	AluJr|SINE|Alu	-17182	NM_001006946	6382		NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
79184	chr16	317351	318050	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	34536	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
200100	chr6	130193651	130193750	+	0	NA	intron (NM_001258275, intron 7 of 13)	HERVH-int|LTR|ERV1	22185	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
208661	chr7	73152301	73152700	+	0	NA	intron (NM_001382494, intron 1 of 8)	AluSz|SINE|Alu	-2424	NR_003580	100093631		NR_003580	ENSG00000293241	GTF2IP4	GTF2I	general transcription factor IIi pseudogene 4	pseudo
223031	chr8	143338701	143339100	+	0	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	-4020	NM_052963	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
36402	chr11	4071801	4072000	+	0	NA	intron (NR_168436, intron 6 of 7)	intron (NR_168436, intron 6 of 7)	-22785	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
222662	chr8	141184651	141185080	+	0	NA	intron (NM_014957, intron 17 of 22)	intron (NM_014957, intron 17 of 22)	43709	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
59714	chr13	29763621	29764030	+	0	NA	TTS (NM_007106)	TTS (NM_007106)	86792	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
100606	chr17	63475501	63475980	+	0	NA	Intergenic	Intergenic	-1321	NM_001382700	1636		NM_000789	ENSG00000159640	ACE	ACE1|CD143|DCP|DCP1	angiotensin I converting enzyme	protein-coding
151099	chr21	44851221	44851830	+	0	NA	non-coding (NR_104597, exon 5 of 5)	non-coding (NR_104597, exon 5 of 5)	22165	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
111019	chr19	3057301	3057730	+	0	NA	intron (NM_198969, intron 3 of 6)	intron (NM_198969, intron 3 of 6)	4980	NM_001130	166		NM_001130	ENSG00000104964	TLE5	AES|AES-1|AES-2|ESP1|GRG|GRG5|Grg-5	TLE family member 5, transcriptional modulator	protein-coding
202783	chr6	159093621	159093880	+	0	NA	Intergenic	Intergenic	-48598	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
176847	chr4	102590651	102591000	+	0	NA	intron (NM_001382625, intron 12 of 24)	Tigger1|DNA|TcMar-Tigger	-88339	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
81900	chr16	11724151	11724650	+	0	NA	intron (NR_136674, intron 3 of 8)	intron (NR_136674, intron 3 of 8)	18457	NM_001324025	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
105518	chr17	83112751	83112850	+	0	NA	Intergenic	Intergenic	31654	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
115971	chr19	17003651	17003950	+	0	NA	intron (NM_015692, intron 8 of 41)	intron (NM_015692, intron 8 of 41)	23010	NR_165644	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
54278	chr12	89222621	89222880	+	0	NA	Intergenic	L1PA8|LINE|L1	129751	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
118089	chr19	34392001	34393150	+	0	NA	intron (NM_001184722, intron 9 of 17)	intron (NM_001184722, intron 9 of 17)	-11823	NM_001353433	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
87812	chr16	75567871	75568230	+	0	NA	exon (NM_007285, exon 3 of 4)	exon (NM_007285, exon 3 of 4)	1671	NM_007285	11345		NM_007285	ENSG00000034713	GABARAPL2	ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2	GABA type A receptor associated protein like 2	protein-coding
135923	chr2	171703621	171704100	+	0	NA	intron (NM_001320882, intron 3 of 16)	intron (NM_001320882, intron 3 of 16)	16105	NM_001320883	1781		NM_001378	ENSG00000077380	DYNC1I2	DIC74|DNCI2|IC2|NEDMIBA	dynein cytoplasmic 1 intermediate chain 2	protein-coding
192128	chr6	16754751	16755050	+	0	NA	intron (NM_000332, intron 1 of 8)	intron (NM_000332, intron 1 of 8)	5284	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
163472	chr3	50627471	50628080	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	10624	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
22809	chr1	224621701	224621900	+	0	NA	intron (NM_152495, intron 1 of 5)	THE1B|LTR|ERVL-MaLR	5483	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
217833	chr8	37692521	37693500	+	0	NA	Intergenic	Intergenic	-2772	NM_025069	80139		NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding
151142	chr21	44907371	44907930	+	0	NA	intron (NM_001127491, intron 3 of 15)	intron (NM_001127491, intron 3 of 15)	13249	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
100956	chr17	64501811	64502500	+	0	NA	promoter-TSS (NR_039969)	promoter-TSS (NR_039969)	-842	NR_039969	100616408		NR_039969	ENSG00000284368	MIR5047	-	microRNA 5047	ncRNA
94520	chr17	29549051	29549450	+	0	NA	3' UTR (NM_020791, exon 20 of 20)	3' UTR (NM_020791, exon 20 of 20)	17787	NM_198147	116236		NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding
65084	chr14	39434401	39434630	+	0	NA	Intergenic	Intergenic	-2015	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
78969	chr15	101500001	101500280	+	0	NA	Intergenic	Intergenic	-10156	NM_138324	5046		NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
132714	chr2	109057651	109058030	+	0	NA	Intergenic	Intergenic	-68620	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
151393	chr21	45979071	45979880	+	0	NA	Intergenic	Intergenic	-2295	NM_001848	1291		NM_001848	ENSG00000142156	COL6A1	BTHLM1|BTHLM1A|OPLL|UCHMD1|UCHMD1A	collagen type VI alpha 1 chain	protein-coding
111313	chr19	3613771	3614750	+	0	NA	TTS (NR_038865)	TTS (NR_038865)	7013	NR_038865	404665		NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	ncRNA
143225	chr20	24972501	24972900	+	0	NA	intron (NM_020531, intron 4 of 8)	intron (NM_020531, intron 4 of 8)	20051	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
60775	chr13	45126071	45126630	+	0	NA	intron (NM_004128, intron 1 of 7)	AluSg|SINE|Alu	5840	NM_004128	2963		NM_004128	ENSG00000188342	GTF2F2	BTF4|RAP30|TF2F2|TFIIF	general transcription factor IIF subunit 2	protein-coding
230860	chr9	129138071	129138230	+	0	NA	intron (NM_001271832, intron 7 of 8)	intron (NM_001271832, intron 7 of 8)	26462	NM_001193397	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
94671	chr17	30369071	30369430	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-9677	NM_001304	1362		NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
91646	chr17	5468171	5469530	+	0	NA	promoter-TSS (NR_135644)	promoter-TSS (NR_135644)	132	NM_020162	56919		NM_020162	ENSG00000005100	DHX33	DDX33	DEAH-box helicase 33	protein-coding
62909	chr13	110916621	110916880	+	0	NA	Intergenic	Intergenic	-1681	NR_104587	55608		NM_017664	ENSG00000088448	ANKRD10	-	ankyrin repeat domain 10	protein-coding
163104	chr3	50114821	50115080	+	0	NA	intron (NR_036627, intron 19 of 23)	AluSz|SINE|Alu	-13962	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
48842	chr12	12368171	12368950	+	0	NA	intron (NM_058169, intron 2 of 3)	AluJo|SINE|Alu	11482	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
5362	chr1	25358921	25359180	+	0	NA	intron (NM_014313, intron 6 of 6)	AluJo|SINE|Alu	20716	NM_014313	23585		NM_014313	ENSG00000183726	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
26550	chr10	21592551	21592650	+	0	NA	intron (NR_136736, intron 5 of 25)	AluYe6|SINE|Alu	58368	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
60614	chr13	42148521	42148780	+	0	NA	intron (NR_123715, intron 2 of 31)	intron (NR_123715, intron 2 of 31)	10592	NR_123714	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
89309	chr16	88719901	88720800	+	0	NA	intron (NM_001142864, intron 41 of 50)	intron (NM_001142864, intron 41 of 50)	-4013	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
124232	chr19	57320021	57321150	+	0	NA	5' UTR (NM_213598, exon 1 of 4)	5' UTR (NM_213598, exon 1 of 4)	113	NM_213598	125919		NM_213598	ENSG00000178229	ZNF543	-	zinc finger protein 543	protein-coding
232730	chr9	136621371	136621900	+	0	NA	Intergenic	Intergenic	-4454	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
184401	chr5	98909501	98910080	+	0	NA	intron (NR_157078, intron 2 of 36)	L1MC5a|LINE|L1	-18772	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
115308	chr19	14765671	14766380	+	0	NA	intron (NM_013447, intron 7 of 20)	MamRep38|DNA|hAT	10902	NM_001271052	30817		NM_013447	ENSG00000127507	ADGRE2	CD312|CD97|EMR2|VBU	adhesion G protein-coupled receptor E2	protein-coding
213678	chr7	140062121	140063500	+	0	NA	exon (NM_022750, exon 1 of 12)	exon (NM_022750, exon 1 of 12)	141	NM_022750	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
118383	chr19	35726851	35727150	+	0	NA	intron (NM_014727, intron 14 of 36)	AluSx1|SINE|Alu	8997	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
176525	chr4	95293021	95293300	+	0	NA	intron (NM_003728, intron 3 of 15)	L2a|LINE|L2	201669	NM_001256794	658		NM_001203	ENSG00000138696	BMPR1B	ALK-6|ALK6|AMD3|AMDD|BDA1D|BDA2|CDw293	bone morphogenetic protein receptor type 1B	protein-coding
104360	chr17	80997051	80998000	+	0	NA	intron (NM_024591, intron 6 of 7)	intron (NM_024591, intron 6 of 7)	5684	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
68598	chr14	89550801	89551400	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	-25116	NR_024620	29018		NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
227859	chr9	93580951	93581450	+	0	NA	intron (NM_005392, intron 1 of 21)	intron (NM_005392, intron 1 of 21)	4616	NM_005392	5253		NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding
73920	chr15	50879001	50879600	+	0	NA	Intergenic	Intergenic	-29383	NM_007347	23431		NM_007347	ENSG00000081014	AP4E1	CPSQ4|SPG51|STUT1	adaptor related protein complex 4 subunit epsilon 1	protein-coding
157405	chr22	44864671	44865030	+	0	NA	Intergenic	Intergenic	112275	NM_181335	23779		NM_181335	ENSG00000241484	ARHGAP8	BPGAP1|PP610	Rho GTPase activating protein 8	protein-coding
32187	chr10	101602571	101603080	+	0	NA	intron (NM_001329743, intron 4 of 5)	intron (NM_001329743, intron 4 of 5)	-1328	NR_036115	100423033		NR_036115	ENSG00000283558	MIR3158-2	mir-3158-2	microRNA 3158-2	ncRNA
42119	chr11	67610971	67612500	+	0	NA	intron (NM_001166102, intron 7 of 9)	intron (NM_001166102, intron 7 of 9)	3929	NR_033791	390213		NR_033791		DOC2GP	-	double C2 domain gamma, pseudogene	pseudo
123752	chr19	55078701	55079100	+	0	NA	intron (NM_133180, intron 3 of 19)	MSR1|Satellite|Satellite	-1492	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
92444	chr17	8467771	8467930	+	0	NA	3' UTR (NM_001330129, exon 8 of 8)	3' UTR (NM_001330129, exon 8 of 8)	31966	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
47583	chr12	4648421	4649530	+	0	NA	promoter-TSS (NM_006422)	promoter-TSS (NM_006422)	72	NM_006422	10566		NM_006422	ENSG00000111254	AKAP3	AKAP 110|AKAP110|CT82|FSP95|HEL159|PRKA3|SOB1|SPGF82	A-kinase anchoring protein 3	protein-coding
76704	chr15	75828571	75828730	+	0	NA	Intergenic	Intergenic	-14797	NM_001284382	92912		NM_173469	ENSG00000140367	UBE2Q2	-	ubiquitin conjugating enzyme E2 Q2	protein-coding
8878	chr1	43581801	43582430	+	0	NA	intron (NM_001329139, intron 7 of 32)	intron (NM_001329139, intron 7 of 32)	51232	NM_002840	5792		NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase receptor type F	protein-coding
153046	chr22	23275101	23275300	+	0	NA	intron (NM_021574, intron 8 of 21)	intron (NM_021574, intron 8 of 21)	12433	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
216788	chr8	22530451	22530750	+	0	NA	intron (NM_005605, intron 10 of 13)	AluSc|SINE|Alu	-21327	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
33148	chr10	112390401	112390600	+	0	NA	intron (NM_016234, intron 1 of 20)	L1MB5|LINE|L1	14302	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
80897	chr16	3722451	3722750	+	0	NA	Intergenic	L1MB5|LINE|L1	-5076	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
46829	chr11	131084251	131084350	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-167821	NM_001347918	399979		NM_014758	ENSG00000120451	SNX19	CHET8	sorting nexin 19	protein-coding
183177	chr5	75510551	75512400	+	0	NA	promoter-TSS (NM_001345922)	promoter-TSS (NM_001345922)	154	NM_005713	10087		NM_005713	ENSG00000113163	CERT1	CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11	ceramide transporter 1	protein-coding
165453	chr3	98571601	98571800	+	0	NA	Intergenic	AluYa5|SINE|Alu	21911	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
59222	chr13	23466251	23467000	+	0	NA	Intergenic	CpG	-2887	NR_038995	100506697		NR_038995	ENSG00000232977	LINC00327	NCRNA00327	long intergenic non-protein coding RNA 327	ncRNA
164055	chr3	53841121	53841980	+	0	NA	intron (NM_018397, intron 1 of 8)	intron (NM_018397, intron 1 of 8)	4869	NM_018397	55349		NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
186119	chr5	134142451	134142650	+	0	NA	intron (NM_201632, intron 5 of 8)	intron (NM_201632, intron 5 of 8)	18932	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
168915	chr3	152340051	152341080	+	0	NA	non-coding (NR_132656, exon 1 of 1)	non-coding (NR_132656, exon 1 of 1)	425	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
21642	chr1	206635171	206636150	+	0	NA	5' UTR (NM_003582, exon 1 of 3)	5' UTR (NM_003582, exon 1 of 3)	124	NM_001004023	8444		NM_003582	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual specificity tyrosine phosphorylation regulated kinase 3	protein-coding
83489	chr16	27411301	27411500	+	0	NA	intron (NM_181079, intron 2 of 9)	L1MA8|LINE|L1	9226	NM_181078	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
67873	chr14	74259651	74260250	+	0	NA	intron (NM_182894, intron 4 of 4)	intron (NM_182894, intron 4 of 4)	20501	NM_182894	338917		NM_182894	ENSG00000119614	VSX2	CHX10|HOX10|MCOP2|MCOPCB3|RET1	visual system homeobox 2	protein-coding
161985	chr3	46356801	46357650	+	0	NA	intron (NM_001123396, intron 1 of 1)	intron (NM_001123396, intron 1 of 1)	3114	NM_001123396	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
19636	chr1	180192121	180192780	+	0	NA	intron (NM_001004128, intron 10 of 12)	L2a|LINE|L2	37581	NM_002826	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
238165	chrX	136858421	136858830	+	0	NA	Intergenic	MIR|SINE|MIR	20646	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
197248	chr6	69866351	69868080	+	0	NA	intron (NM_001858, intron 1 of 50)	CpG	659	NM_001858	1310		NM_001858	ENSG00000082293	COL19A1	COL9A1L|D6S228E	collagen type XIX alpha 1 chain	protein-coding
235322	chrX	43349501	43349700	+	0	NA	Intergenic	L1PA17|LINE|L1	172606	NR_110387	101927501		NR_110387	ENSG00000224294	PINCR	-	p53-induced noncoding RNA	ncRNA
33841	chr10	124223401	124223780	+	0	NA	Intergenic	Intergenic	-129992	NM_001270764	51363		NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding
142929	chr20	18507101	18508800	+	0	NA	promoter-TSS (NM_006363)	promoter-TSS (NM_006363)	10	NM_001172746	10483		NM_006363	ENSG00000101310	SEC23B	CDA-II|CDAII|CDAN2|CWS7|HEMPAS|hSec23B	SEC23 homolog B, COPII coat complex component	protein-coding
173531	chr4	10013771	10014000	+	0	NA	intron (NM_020041, intron 2 of 11)	intron (NM_020041, intron 2 of 11)	7612	NM_020041	56606		NM_020041	ENSG00000109667	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 member 9	protein-coding
128427	chr2	55414871	55415030	+	0	NA	intron (NM_018084, intron 2 of 31)	AluY|SINE|Alu	4906	NM_018084	55704		NM_018084	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL	coiled-coil domain containing 88A	protein-coding
224802	chr9	22447171	22447930	+	0	NA	exon (NM_022160, exon 1 of 2)	exon (NM_022160, exon 1 of 2)	726	NM_022160	63951		NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
30995	chr10	88160051	88160150	+	0	NA	Intergenic	AluYh3|SINE|Alu	296475	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
173816	chr4	18020251	18021000	+	0	NA	non-coding (NR_158565, exon 1 of 7)	non-coding (NR_158565, exon 1 of 7)	1130	NR_136669	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
186060	chr5	134078051	134078700	+	0	NA	Intergenic	Intergenic	-36306	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
63191	chr13	113764051	113764350	+	0	NA	intron (NM_001348663, intron 1 of 7)	intron (NM_001348663, intron 1 of 7)	4974	NM_182614	348013		NM_182614	ENSG00000184497	TMEM255B	FAM70B	transmembrane protein 255B	protein-coding
106434	chr18	13607051	13607350	+	0	NA	intron (NM_001378099, intron 4 of 6)	MIR|SINE|MIR	-3914	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
156230	chr22	40372601	40373600	+	0	NA	intron (NM_001350047, intron 1 of 20)	intron (NM_001350047, intron 1 of 20)	2506	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
43542	chr11	82900221	82900900	+	0	NA	promoter-TSS (NM_005040)	promoter-TSS (NM_005040)	43	NM_199418	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
181197	chr5	39151201	39151400	+	0	NA	intron (NM_199335, intron 3 of 17)	AluJo|SINE|Alu	68263	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
179175	chr4	173025101	173025450	+	0	NA	intron (NM_001034845, intron 12 of 12)	intron (NM_001034845, intron 12 of 12)	-143536	NM_001375599	51809		NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
146231	chr20	48812821	48814650	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	14264	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
17859	chr1	159930351	159930880	+	0	NA	intron (NM_001135050, intron 14 of 20)	intron (NM_001135050, intron 14 of 20)	-5108	NM_003564	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
159369	chr3	13336621	13336880	+	0	NA	intron (NM_024923, intron 27 of 39)	intron (NM_024923, intron 27 of 39)	-53493	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
145787	chr20	45377301	45377500	+	0	NA	TTS (NM_001099791)	TTS (NM_001099791)	925	NM_014477	27296		NM_014477	ENSG00000124251	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
104736	chr17	81664271	81664680	+	0	NA	TTS (NR_130938)	TTS (NR_130938)	-1348	NR_158591	5148		NM_002602	ENSG00000185527	PDE6G	PDEG|RP57	phosphodiesterase 6G	protein-coding
30960	chr10	87827671	87827980	+	0	NA	intron (NR_028492, intron 2 of 3)	Tigger1|DNA|TcMar-Tigger	9512	NR_028492	142913		NM_152427	ENSG00000290782	CFL1P1	CFLP1	cofilin 1 pseudogene 1	pseudo
212131	chr7	116258571	116259230	+	0	NA	TTS (NM_152829)	TTS (NM_152829)	27764	NR_130921	102724434		NR_130921	ENSG00000237870	LOC102724434	-	uncharacterized LOC102724434	ncRNA
11477	chr1	90710601	90711230	+	0	NA	TTS (NM_020063)	TTS (NM_020063)	6387	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
43054	chr11	74321521	74321780	+	0	NA	intron (NR_120556, intron 3 of 6)	intron (NR_120556, intron 3 of 6)	-10010	NM_182904	283208		NM_182904	ENSG00000149380	P4HA3	-	prolyl 4-hydroxylase subunit alpha 3	protein-coding
69210	chr14	92688701	92689150	+	0	NA	TTS (NM_001319987)	TTS (NM_001319987)	59702	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
103256	chr17	77609971	77611130	+	0	NA	Intergenic	MER57B1|LTR|ERV1	63609	NR_040050	100507351		NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
201335	chr6	144481821	144482320	+	0	NA	intron (NM_007124, intron 25 of 73)	intron (NM_007124, intron 25 of 73)	76415	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
232366	chr9	135815951	135816250	+	0	NA	intron (NM_015447, intron 14 of 16)	intron (NM_015447, intron 14 of 16)	91446	NM_015447	157922		NM_015447	ENSG00000130559	CAMSAP1	CDCBM12	calmodulin regulated spectrin associated protein 1	protein-coding
63898	chr14	21868201	21869050	+	0	NA	Intergenic	Intergenic	-197608	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
93619	chr17	19157171	19157430	+	0	NA	intron (NR_160286, intron 3 of 3).2	MIRb|SINE|MIR	5324	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
94869	chr17	31518621	31519080	+	0	NA	intron (NM_001346747, intron 2 of 11)	AluSc|SINE|Alu	-16033	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
42317	chr11	68473301	68474000	+	0	NA	intron (NM_001352362, intron 2 of 24)	MER21B|LTR|ERVL	12898	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
34095	chr10	125522101	125522350	+	0	NA	Intergenic	Intergenic	-52146	NR_023362	100169752		NR_023362	ENSG00000237675	TEX36-AS1	-	TEX36 antisense RNA 1	ncRNA
32389	chr10	102420401	102423580	+	0	NA	exon (NM_024326, exon 3 of 4)	exon (NM_024326, exon 3 of 4)	-2056	NM_001270965	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
180409	chr5	10356521	10356980	+	0	NA	intron (NM_001270661, intron 1 of 22)	intron (NM_001270661, intron 1 of 22)	3055	NM_001270661	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
218495	chr8	52467201	52467480	+	0	NA	Intergenic	Intergenic	-57461	NM_001352863	9705		NM_014682	ENSG00000147488	ST18	NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387	ST18 C2H2C-type zinc finger transcription factor	protein-coding
211698	chr7	106766651	106766750	+	0	NA	Intergenic	L3|LINE|CR1	-98582	NM_001282427	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
60255	chr13	40592371	40592930	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	73991	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
35816	chr11	2257901	2258100	+	0	NA	Intergenic	AluY|SINE|Alu	12588	NM_005170	430		NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding
89107	chr16	88492501	88492700	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	23682	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
71581	chr14	106491901	106492130	+	0	NA	intron (NR_027457, intron 2 of 2).2	LTR13|LTR|ERVK	9576	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
145619	chr20	44670021	44670280	+	0	NA	intron (NR_034104, intron 1 of 4)	MER101-int|LTR|ERV1	1589	NR_034104	79015		NM_024049	ENSG00000283440	LINC01260	-	long intergenic non-protein coding RNA 1260	ncRNA
75589	chr15	67089471	67089630	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	23948	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
195049	chr6	35492701	35493130	+	0	NA	intron (NM_003214, intron 1 of 12)	intron (NM_003214, intron 1 of 12)	4164	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
156384	chr22	41100371	41100530	+	0	NA	intron (NM_001362843, intron 1 of 29)	intron (NM_001362843, intron 1 of 29)	7858	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
110637	chr19	2228001	2228580	+	0	NA	intron (NM_032482, intron 27 of 27)	CpG	5859	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
74433	chr15	59300071	59300800	+	0	NA	intron (NM_004998, intron 1 of 27)	intron (NM_004998, intron 1 of 27)	72436	NM_004998	4643		NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
37722	chr11	31341001	31341200	+	0	NA	intron (NM_181807, intron 1 of 8)	intron (NM_181807, intron 1 of 8)	28639	NM_001367979	341019		NM_020869	ENSG00000170959	DCDC1	DCDC5	doublecortin domain containing 1	protein-coding
34060	chr10	124791451	124792800	+	0	NA	promoter-TSS (NM_001304467)	promoter-TSS (NM_001304467)	-238	NM_001304468	399818		NM_212554	ENSG00000203791	EEF1AKMT2	C10orf138|Efm4|METTL10	EEF1A lysine methyltransferase 2	protein-coding
153373	chr22	24521851	24522500	+	0	NA	intron (NM_016327, intron 8 of 9)	intron (NM_016327, intron 8 of 9)	26843	NM_016327	51733		NM_016327	ENSG00000100024	UPB1	BUP1	beta-ureidopropionase 1	protein-coding
88226	chr16	81885801	81886350	+	0	NA	intron (NM_002661, intron 9 of 32)	intron (NM_002661, intron 9 of 32)	106784	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
38541	chr11	45907471	45908700	+	0	NA	promoter-TSS (NM_001080446)	promoter-TSS (NM_001080446)	-814	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
64547	chr14	24563471	24563630	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	12700	NM_001911	1511		NM_001911	ENSG00000100448	CTSG	CATG|CG	cathepsin G	protein-coding
237530	chrX	120310451	120310700	+	0	NA	intron (NM_001104544, intron 1 of 8)	intron (NM_001104544, intron 1 of 8)	886	NM_001104544	55026		NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
85203	chr16	47017821	47018400	+	0	NA	Intergenic	Intergenic	-44436	NM_005880	10294		NM_005880	ENSG00000069345	DNAJA2	CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2	DnaJ heat shock protein family (Hsp40) member A2	protein-coding
91428	chr17	4724321	4724780	+	0	NA	Intergenic	AluYf1|SINE|Alu	-6878	NM_001305000	400569		NM_001001683	ENSG00000161920	MED11	HSPC296|NDDRSB	mediator complex subunit 11	protein-coding
195192	chr6	36071971	36072330	+	0	NA	intron (NM_139014, intron 3 of 10)	AluJr4|SINE|Alu	44342	NM_139012	1432		NM_001315	ENSG00000112062	MAPK14	CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA	mitogen-activated protein kinase 14	protein-coding
161492	chr3	42520421	42520680	+	0	NA	intron (NM_004624, intron 3 of 12)	L2b|LINE|L2	12056	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
210563	chr7	100347621	100347880	+	0	NA	intron (NR_036569, intron 4 of 17)	intron (NR_036569, intron 4 of 17)	-4568	NR_103728	101752334		NR_103728		PVRIG2P	-	PVR related immunoglobulin domain containing 2, pseudogene	pseudo
234184	chrX	11792751	11793330	+	0	NA	Intergenic	Intergenic	-29399	NM_001368395	9758		NM_014728	ENSG00000169933	FRMPD4	MRX104|PDZD10|PDZK10|XLID104	FERM and PDZ domain containing 4	protein-coding
109925	chr19	1304421	1304680	+	0	NA	Intergenic	Intergenic	18677	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
207583	chr7	44954851	44955530	+	0	NA	Intergenic	Intergenic	23825	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
29441	chr10	70384171	70384750	+	0	NA	Intergenic	Intergenic	-1810	NM_001278214	55222		NM_018205	ENSG00000172731	LRRC20	-	leucine rich repeat containing 20	protein-coding
195343	chr6	36626651	36627180	+	0	NA	Intergenic	Intergenic	-4403	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
108235	chr18	63206651	63206750	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	113069	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
182405	chr5	61337021	61338250	+	0	NA	intron (NM_020928, intron 1 of 13)	L1ME4b|LINE|L1	5377	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
111160	chr19	3311121	3311380	+	0	NA	Intergenic	Intergenic	-48380	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
46560	chr11	128487921	128489430	+	0	NA	intron (NM_001143820, intron 5 of 9)	intron (NM_001143820, intron 5 of 9)	33635	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
225626	chr9	36259901	36260300	+	0	NA	intron (NM_001128227, intron 1 of 11)	L2|LINE|L2	-1652	NM_001374797	10020		NM_005476	ENSG00000159921	GNE	DMRV|GLCNE|IBM2|NM|THC12|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
211666	chr7	106277271	106277700	+	0	NA	intron (NM_005746, intron 1 of 10)	intron (NM_005746, intron 1 of 10)	7498	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
125120	chr2	9792671	9793230	+	0	NA	Intergenic	Intergenic	-50492	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
213857	chr7	142300671	142301130	+	0	NA	Intergenic	Intergenic	-28651	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
195227	chr6	36171621	36171900	+	0	NA	Intergenic	Intergenic	-24984	NM_015695	27154		NM_015695	ENSG00000096070	BRPF3	-	bromodomain and PHD finger containing 3	protein-coding
144388	chr20	35208121	35208950	+	0	NA	intron (NM_001355008, intron 4 of 14)	intron (NM_001355008, intron 4 of 14)	-18155	NM_006690	10893		NM_006690	ENSG00000125966	MMP24	MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding
221443	chr8	124195601	124196880	+	0	NA	intron (NR_125420, intron 2 of 2)	intron (NR_125420, intron 2 of 2)	-24718	NR_103547	157376		NM_182525	ENSG00000253868	FER1L6-AS2	C8orf78	FER1L6 antisense RNA 2	ncRNA
123880	chr19	55291871	55292530	+	0	NA	intron (NM_032430, intron 4 of 18)	intron (NM_032430, intron 4 of 18)	8203	NM_032430	84446		NM_032430	ENSG00000160469	BRSK1	SAD-B|hSAD1	BR serine/threonine kinase 1	protein-coding
116097	chr19	17282571	17283450	+	0	NA	intron (NM_001278445, intron 4 of 8)	intron (NM_001278445, intron 4 of 8)	1109	NM_001278444	126549		NM_152363	ENSG00000160117	ANKLE1	ANKRD41|LEM3|LEMD6	ankyrin repeat and LEM domain containing 1	protein-coding
156017	chr22	39946501	39947880	+	0	NA	intron (NM_001291826, intron 2 of 6)	intron (NM_001291826, intron 2 of 6)	373	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
104113	chr17	80289021	80289280	+	0	NA	intron (NM_020954, intron 5 of 16)	intron (NM_020954, intron 5 of 16)	28298	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
137514	chr2	197188271	197188730	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	-9491	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
153079	chr22	23318851	23319150	+	0	NA	TTS (NM_004327)	TTS (NM_004327)	-7616	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
176341	chr4	88282671	88285430	+	0	NA	promoter-TSS (NR_134236)	promoter-TSS (NR_134236)	511	NM_152542	152926		NM_152542	ENSG00000163644	PPM1K	BCKDH|BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07	protein phosphatase, Mg2+/Mn2+ dependent 1K	protein-coding
46595	chr11	128525171	128526200	+	0	NA	promoter-TSS (NR_120581)	promoter-TSS (NR_120581)	-457	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
54758	chr12	94075371	94075530	+	0	NA	Intergenic	Intergenic	-73127	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
229478	chr9	122125071	122125950	+	0	NA	Intergenic	Intergenic	-5343	NR_039690	100616312		NR_039690	ENSG00000266583	MIR4478	mir-4478	microRNA 4478	ncRNA
67001	chr14	67373371	67373530	+	0	NA	intron (NM_004094, intron 2 of 7)	L1MEb|LINE|L1	13122	NM_004094	1965		NM_004094	ENSG00000134001	EIF2S1	EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A	eukaryotic translation initiation factor 2 subunit alpha	protein-coding
12926	chr1	110650121	110650580	+	0	NA	Intergenic	Intergenic	-18910	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
86787	chr16	67805701	67807750	+	0	NA	promoter-TSS (NM_020850)	promoter-TSS (NM_020850)	-164	NM_001288993	55815		NM_018430	ENSG00000102904	TSNAXIP1	TXI1	translin associated factor X interacting protein 1	protein-coding
181222	chr5	39180421	39180780	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	38963	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
216294	chr8	12595751	12596080	+	0	NA	intron (NR_047662, intron 6 of 8)	intron (NR_047662, intron 6 of 8)	69696	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
222916	chr8	142864971	142865630	+	0	NA	Intergenic	L1P4b|LINE|L1	14520	NM_001026213	1584		NM_000497	ENSG00000160882	CYP11B1	CPN1|CYP11B|FHI|P450C11	cytochrome P450 family 11 subfamily B member 1	protein-coding
206410	chr7	32427701	32428000	+	0	NA	exon (NM_001322059, exon 1 of 18)	exon (NM_001322059, exon 1 of 18)	374	NM_001322059	5137		NM_005020	ENSG00000154678	PDE1C	DFNA74|Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding
140925	chr2	237720001	237720680	+	0	NA	intron (NM_001137550, intron 5 of 23)	AluSz|SINE|Alu	28135	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
18310	chr1	161169151	161169450	+	0	NA	intron (NM_001365400, intron 6 of 11)	intron (NM_001365400, intron 6 of 11)	2654	NM_001365398	5498		NM_000309	ENSG00000143224	PPOX	PPO|V290M|VP|VPCO	protoporphyrinogen oxidase	protein-coding
133470	chr2	119826251	119826800	+	0	NA	intron (NM_002830, intron 2 of 26)	MER20|DNA|hAT-Charlie	66603	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
107815	chr18	51425721	51425980	+	0	NA	intron (NR_040074, intron 1 of 2)	intron (NR_040074, intron 1 of 2)	33808	NR_040075	100287225		NR_040074	ENSG00000227115	LINC01630	-	long intergenic non-protein coding RNA 1630	ncRNA
142194	chr20	2969551	2969750	+	0	NA	intron (NM_080841, intron 6 of 23)	AluY|SINE|Alu	-73972	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
117203	chr19	19389671	19390200	+	0	NA	intron (NM_001384535, intron 1 of 10)	AluJb|SINE|Alu	4092	NM_001384518	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
155352	chr22	38270071	38270950	+	0	NA	intron (NM_001195072, intron 1 of 9)	intron (NM_001195072, intron 1 of 9)	2154	NM_001195071	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
23998	chr1	235241401	235242000	+	0	NA	intron (NM_016374, intron 7 of 23)	AluSc|SINE|Alu	-51584	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
61532	chr13	60162171	60162330	+	0	NA	intron (NM_001042517, intron 1 of 27)	intron (NM_001042517, intron 1 of 27)	1678	NM_001258367	81624		NM_030932	ENSG00000139734	DIAPH3	AN|AUNA1|DIA2|DRF3|NSDAN|diap3|mDia2	diaphanous related formin 3	protein-coding
177255	chr4	109301601	109301800	+	0	NA	intron (NM_198721, intron 2 of 36)	intron (NM_198721, intron 2 of 36)	958	NM_032518	84570		NM_032518	ENSG00000188517	COL25A1	AMY|CFEOM5|CLAC|CLAC-P|CLACP	collagen type XXV alpha 1 chain	protein-coding
37214	chr11	14360621	14360880	+	0	NA	intron (NM_001177314, intron 1 of 5)	AluSz6|SINE|Alu	-1567	NM_012250	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
62136	chr13	95690701	95691100	+	0	NA	intron (NM_006260, intron 1 of 11)	SVA_D|Retroposon|SVA	13761	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
232398	chr9	135991801	135992130	+	0	NA	Intergenic	Intergenic	-30592	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
77424	chr15	84051251	84051480	+	0	NA	Intergenic	Intergenic	-28822	NR_036652	648809		NR_036652		EFL1P1	EFTUD1P1|FAM42B|HsT19321	elongation factor like GTPase 1 pseudogene 1	pseudo
51956	chr12	53753271	53754230	+	0	NA	intron (NR_104332, intron 2 of 2)	intron (NR_104332, intron 2 of 2)	-1915	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
163	chr1	604401	604600	+	0	NA	Intergenic	Intergenic	24509	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
162051	chr3	46808851	46808950	+	0	NA	non-coding (NR_160551, exon 3 of 3)	non-coding (NR_160551, exon 3 of 3)	3674	NR_160551	729756		NR_160551		PRSS44P	PRSS44|TESSP-4|TESSP4	serine protease 44, pseudogene	pseudo
189233	chr5	171941301	171942580	+	0	NA	intron (NM_033644, intron 1 of 12)	Kanga2_a|DNA|TcMar-Tc2	64698	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
159063	chr3	11656551	11656650	+	0	NA	intron (NM_014667, intron 2 of 5)	intron (NM_014667, intron 2 of 5)	-12685	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
226025	chr9	42419851	42419950	+	0	NA	Intergenic	AluJb|SINE|Alu	149449	NR_126050	103908605		NR_126050		FAM88E	-	family with sequence similarity 88 member E	ncRNA
8528	chr1	41014251	41015300	+	0	NA	TTS (NM_001377532)	TTS (NM_001377532)	185	NR_037868	100507178		NR_037868	ENSG00000281207	SLFNL1-AS1	-	SLFNL1 antisense RNA 1	ncRNA
188923	chr5	160421471	160422350	+	0	NA	promoter-TSS (NM_004219)	promoter-TSS (NM_004219)	0	NM_001282383	9232		NM_004219	ENSG00000164611	PTTG1	EAP1|ECRAR|HPTTG|PTTG|TUTR1	PTTG1 regulator of sister chromatid separation, securin	protein-coding
127160	chr2	37975901	37976100	+	0	NA	intron (NM_144713, intron 4 of 10)	intron (NM_144713, intron 4 of 10)	25536	NM_144713	151393		NM_144713	ENSG00000115841	RMDN2	BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4	regulator of microtubule dynamics 2	protein-coding
9240	chr1	46065401	46065750	+	0	NA	intron (NM_003629, intron 5 of 9)	MLT1J|LTR|ERVL-MaLR	65098	NM_001328651	8503		NM_003629	ENSG00000117461	PIK3R3	p55|p55-GAMMA|p55PIK	phosphoinositide-3-kinase regulatory subunit 3	protein-coding
15468	chr1	150356701	150356900	+	0	NA	Intergenic	L1MC1|LINE|L1	-7311	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
147938	chr20	62934171	62934330	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	3654	NM_080797	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
67363	chr14	69719601	69719800	+	0	NA	Intergenic	Intergenic	-47442	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
14783	chr1	146076671	146076830	+	0	NA	exon (NM_001302371, exon 77 of 90)	exon (NM_001302371, exon 77 of 90)	24154	NR_125967	101928979		NR_125967		LINC01719	-	long intergenic non-protein coding RNA 1719	ncRNA
224619	chr9	20513501	20513700	+	0	NA	intron (NM_001286691, intron 2 of 10)	MER54A|LTR|ERVL	-11258	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
180224	chr5	1526971	1527450	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	-3250	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
197267	chr6	70607401	70607600	+	0	NA	Intergenic	L1PBa|LINE|L1	40570	NM_145267	135154		NM_145267	ENSG00000154079	SDHAF4	C6orf57|Sdh8	succinate dehydrogenase complex assembly factor 4	protein-coding
7674	chr1	35771571	35771850	+	0	NA	Intergenic	LTR33|LTR|ERVL	-1732	NM_001330490	63967		NM_022111	ENSG00000092853	CLSPN	-	claspin	protein-coding
227666	chr9	92979301	92979500	+	0	NA	intron (NM_001369951, intron 3 of 17)	L1M3|LINE|L1	4931	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
32681	chr10	103917521	103918900	+	0	NA	promoter-TSS (NM_024928)	promoter-TSS (NM_024928)	-26	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
15100	chr1	148570021	148570680	+	0	NA	intron (NM_015383, intron 19 of 65)	intron (NM_015383, intron 19 of 65)	25367	NM_015383	25832		NM_015383	ENSG00000270629	NBPF14	AE5|DJ328E19.C1.1|NBPF	NBPF member 14	protein-coding
163828	chr3	52452821	52453300	+	0	NA	intron (NM_003280, intron 1 of 5)	intron (NM_003280, intron 1 of 5)	981	NM_003280	7134		NM_003280	ENSG00000114854	TNNC1	CMD1Z|CMH13|TN-C|TNC|TNNC	troponin C1, slow skeletal and cardiac type	protein-coding
16392	chr1	154411671	154412030	+	0	NA	intron (NM_001206866, intron 1 of 6)	AluJb|SINE|Alu	-5286	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
79143	chr16	241221	241480	+	0	NA	intron (NM_001284497, intron 1 of 12)	AluJr|SINE|Alu	6529	NM_001284497	83986		NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding
64289	chr14	23512151	23512650	+	0	NA	promoter-TSS (NR_046052)	promoter-TSS (NR_046052)	-410	NR_046052	79178		NM_024328	ENSG00000259431	THTPA	THTP|THTPASE	thiamine triphosphatase	protein-coding
48211	chr12	8098401	8098600	+	0	NA	TTS (NM_015509)	TTS (NM_015509)	16226	NM_015509	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
113384	chr19	9104351	9104450	+	0	NA	Intergenic	Intergenic	-1094	NM_001005193	390882		NM_001005193	ENSG00000170923	OR7G2	OR19-6|OST260	olfactory receptor family 7 subfamily G member 2	protein-coding
94177	chr17	28517101	28517300	+	0	NA	intron (NM_001369369, intron 1 of 8)	intron (NM_001369369, intron 1 of 8)	-6741	NM_003593	8456		NM_003593	ENSG00000109101	FOXN1	FKHL20|RONU|TIDAND|TLIND|WHN	forkhead box N1	protein-coding
168103	chr3	138571721	138572180	+	0	NA	intron (NM_001288965, intron 2 of 16)	AluY|SINE|Alu	20006	NM_001320600	80321		NM_024491	ENSG00000114107	CEP70	BITE	centrosomal protein 70	protein-coding
228009	chr9	95574251	95574750	+	0	NA	Intergenic	Intergenic	-57529	NM_001083602	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
176437	chr4	89280951	89282000	+	0	NA	intron (NM_198281, intron 1 of 1)	MSTA|LTR|ERVL-MaLR	26325	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
165188	chr3	72448451	72449200	+	0	NA	Intergenic	Intergenic	-2202	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
136321	chr2	175142751	175142850	+	0	NA	intron (NR_045773, intron 2 of 13)	GA-rich|Low_complexity|Low_complexity	24909	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
116373	chr19	17932251	17933700	+	0	NA	promoter-TSS (NM_001136203)	promoter-TSS (NM_001136203)	-40	NM_001136203	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
217443	chr8	28608001	28609200	+	0	NA	Intergenic	AluJb|SINE|Alu	92864	NR_126027	101929402		NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA
40500	chr11	64266201	64266400	+	0	NA	intron (NM_001316314, intron 27 of 31)	intron (NM_001316314, intron 27 of 31)	-4231	NM_001378076	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
3961	chr1	18647051	18647350	+	0	NA	intron (NM_001135254, intron 4 of 8)	CpG	16354	NM_013945	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
169291	chr3	158539421	158539750	+	0	NA	intron (NM_016625, intron 8 of 9)	L4_C_Mam|LINE|RTE-X	12877	NR_148407	110599565		NR_148407		UC.134	-	long non-coding RNA uc.134	ncRNA
130159	chr2	75425271	75425430	+	0	NA	Intergenic	LTR28C|LTR|ERV1	-98718	NR_110281	101927884		NR_110281	ENSG00000231172	EVA1A-AS	EVA1A-AS1	EVA1A antisense RNA	ncRNA
75247	chr15	64897221	64898250	+	0	NA	Intergenic	Intergenic	-14167	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
200157	chr6	130513451	130514250	+	0	NA	Intergenic	MER101|LTR|ERV1	76733	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
64938	chr14	35806501	35806850	+	0	NA	intron (NM_014990, intron 1 of 40)	intron (NM_014990, intron 1 of 40)	2620	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
65043	chr14	39186001	39186600	+	0	NA	Intergenic	AluY|SINE|Alu	11046	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
14821	chr1	146296821	146297080	+	0	NA	promoter-TSS (NR_104005)	promoter-TSS (NR_104005)	-823	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
4445	chr1	21324001	21325400	+	0	NA	intron (NM_001113348, intron 1 of 18)	intron (NM_001113348, intron 1 of 18)	20804	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
160494	chr3	30621571	30622230	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	15299	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
114750	chr19	13276951	13277700	+	0	NA	intron (NM_023035, intron 22 of 46)	MER91B|DNA|hAT-Tip100	126914	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
121203	chr19	46602401	46603980	+	0	NA	intron (NM_001329923, intron 2 of 6)	intron (NM_001329923, intron 2 of 6)	1118	NM_001329922	808		NM_005184	ENSG00000160014	CALM3	CALM|CAM1|CAM2|CAMB|CPVT6|CaM|CaMIII|HEL-S-72|LQT16|PHKD|PHKD3	calmodulin 3	protein-coding
49067	chr12	14413651	14413750	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	28419	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
218778	chr8	58987701	58987900	+	0	NA	intron (NM_014729, intron 1 of 8)	MamRep137|DNA|TcMar-Tigger	131347	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
80698	chr16	3057221	3057480	+	0	NA	exon (NM_022468, exon 6 of 10)	exon (NM_022468, exon 6 of 10)	2020	NR_123723	100507419		NR_123723		MMP25-AS1	-	MMP25 antisense RNA 1	ncRNA
176896	chr4	102792501	102793550	+	0	NA	intron (NR_125932, intron 4 of 4)	L2a|LINE|L2	15988	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
128652	chr2	61435821	61436400	+	0	NA	intron (NM_014709, intron 1 of 79)	L1MA5A|LINE|L1	-18733	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
102651	chr17	76063551	76064500	+	0	NA	exon (NM_014230, exon 4 of 16)	exon (NM_014230, exon 4 of 16)	8492	NM_014230	6730		NM_014230	ENSG00000167881	SRP68	SCN10	signal recognition particle 68	protein-coding
113230	chr19	8480471	8480840	+	0	NA	intron (NM_031203, intron 13 of 16)	AluSx3|SINE|Alu	21985	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
145802	chr20	45419321	45420680	+	0	NA	intron (NR_047691, intron 5 of 11)	MIRb|SINE|MIR	3859	NR_047695	51604		NM_015937	ENSG00000124155	PIGT	CGI-06|MCAHS3|NDAP|PIG-T|PNH2	phosphatidylinositol glycan anchor biosynthesis class T	protein-coding
88514	chr16	85313921	85314380	+	0	NA	Intergenic	Intergenic	-7825	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
73422	chr15	43103621	43103880	+	0	NA	intron (NM_174916, intron 1 of 46)	intron (NM_174916, intron 1 of 46)	2288	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
181179	chr5	39099171	39099530	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-24951	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
125218	chr2	10324801	10325000	+	0	NA	intron (NM_134421, intron 1 of 5)	AluSz|SINE|Alu	-5263	NM_001258357	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
14128	chr1	120951271	120951830	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	8950	NR_104073	101954264		NR_104073	ENSG00000277610	RNVU1-4	RNU1-102|RNU1-50|RNVU1-5|vU1.4|vU1.5	RNA, variant U1 small nuclear 4	snRNA
33212	chr10	114024851	114025530	+	0	NA	Intergenic	Intergenic	-18676	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
102901	chr17	76540521	76541130	+	0	NA	intron (NM_001077620, intron 2 of 4)	intron (NM_001077620, intron 2 of 4)	781	NM_001077620	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
128902	chr2	64200271	64201100	+	0	NA	intron (NR_033837, intron 3 of 5)	AluSz6|SINE|Alu	4800	NR_033837	150992		NR_033837	ENSG00000230923	LINC00309	NCRNA00309	long intergenic non-protein coding RNA 309	ncRNA
93311	chr17	18172901	18173930	+	0	NA	intron (NM_016239, intron 63 of 64)	BC200|scRNA|scRNA	-10413	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
60038	chr13	32648901	32649100	+	0	NA	intron (NM_015032, intron 2 of 34)	A-rich|Low_complexity|Low_complexity	62548	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
59503	chr13	26785721	26786300	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-25224	NM_005288	2835		NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
224787	chr9	22097701	22097900	+	0	NA	intron (NR_047532, intron 9 of 13)	intron (NR_047532, intron 9 of 13)	-88487	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
189421	chr5	172835571	172835730	+	0	NA	intron (NM_001031711, intron 1 of 9)	intron (NM_001031711, intron 1 of 9)	1399	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
61736	chr13	74133401	74136000	+	0	NA	promoter-TSS (NM_007249)	promoter-TSS (NM_007249)	-771	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
71996	chr15	25849001	25849590	+	0	NA	promoter-TSS (NR_039865)	promoter-TSS (NR_039865)	-470	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
1470	chr1	2688901	2689100	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-55984	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
203490	chr7	593351	594180	+	0	NA	intron (NM_001164759, intron 7 of 10)	intron (NM_001164759, intron 7 of 10)	-9080	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
47544	chr12	4283871	4284030	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-7766	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
126708	chr2	30168571	30169000	+	0	NA	Intergenic	L2b|LINE|L2	-18649	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
43746	chr11	86116071	86117100	+	0	NA	Intergenic	Intergenic	-46725	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
56528	chr12	116703101	116703500	+	0	NA	Intergenic	Intergenic	34769	NM_001353625	79794		NM_024738	ENSG00000111412	SPRING1	C12orf49|LUR1|POST1|SPRING	SREBF pathway regulator in golgi 1	protein-coding
213214	chr7	133035351	133035450	+	0	NA	promoter-TSS (NR_037427).2	promoter-TSS (NR_037427).2	-485	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
92483	chr17	8846851	8847100	+	0	NA	intron (NR_110865, intron 2 of 19)	intron (NR_110865, intron 2 of 19)	20699	NM_001010855	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
36900	chr11	10785301	10785700	+	0	NA	Intergenic	Intergenic	16108	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
96270	chr17	39861301	39861780	+	0	NA	intron (NM_183231, intron 1 of 5)	intron (NM_183231, intron 1 of 5)	2648	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
17696	chr1	158148051	158148930	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-7850	NR_033946	646268		NR_033946	ENSG00000231666	LINC01704	-	long intergenic non-protein coding RNA 1704	ncRNA
176868	chr4	102619951	102620250	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-117614	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
104532	chr17	81249021	81249900	+	0	NA	intron (NM_001037984, intron 14 of 15)	intron (NM_001037984, intron 14 of 15)	9546	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
229795	chr9	125263821	125264950	+	0	NA	intron (NR_148732, intron 2 of 26)	AluSx1|SINE|Alu	2559	NM_001354295	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
146423	chr20	49591371	49591800	+	0	NA	Intergenic	MIR|SINE|MIR	-23448	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
47052	chr12	544721	544980	+	0	NA	intron (NM_173593, intron 4 of 19)	intron (NM_173593, intron 4 of 19)	41636	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
151226	chr21	45258021	45258280	+	0	NA	intron (NR_135279, intron 2 of 2)	intron (NR_135279, intron 2 of 2)	23810	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
185356	chr5	127229151	127229800	+	0	NA	Intergenic	CpG	-61289	NM_001308121	84466		NM_032446	ENSG00000145794	MEGF10	CMYP10A|CMYP10B|EMARDD|SR-F3	multiple EGF like domains 10	protein-coding
207055	chr7	39731201	39731850	+	0	NA	Intergenic	Intergenic	-2043	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
203761	chr7	1177061	1177680	+	0	NA	Intergenic	Intergenic	16585	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
13345	chr1	113816451	113816750	+	0	NA	intron (NR_125965, intron 3 of 4)	intron (NR_125965, intron 3 of 4)	3988	NR_125965	100287722		NR_037864	ENSG00000226167	AP4B1-AS1	-	AP4B1 antisense RNA 1	ncRNA
81402	chr16	7566751	7566850	+	0	NA	intron (NM_145893, intron 2 of 13)	intron (NM_145893, intron 2 of 13)	233955	NM_145892	54715		NM_018723	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding fox-1 homolog 1	protein-coding
174189	chr4	36337751	36337850	+	0	NA	intron (NR_165630, intron 10 of 10)	intron (NR_165630, intron 10 of 10)	56184	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
102378	chr17	75569201	75569400	+	0	NA	exon (NM_001031803, exon 14 of 26)	exon (NM_001031803, exon 14 of 26)	-18758	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
216972	chr8	23063351	23064150	+	0	NA	intron (NM_147187, intron 1 of 9)	intron (NM_147187, intron 1 of 9)	-4479	NR_038873	286059		NR_038873	ENSG00000246130	TNFRSF10B-AS1	DR5-AS	TNFRSF10B antisense RNA 1	pseudo
52511	chr12	56047021	56048180	+	0	NA	Intergenic	AluY|SINE|Alu	5682	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
144626	chr20	35893651	35894580	+	0	NA	intron (NM_016436, intron 9 of 17)	L3|LINE|CR1	60387	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
74798	chr15	63417371	63417730	+	0	NA	intron (NR_120375, intron 4 of 6)	GA-rich|Low_complexity|Low_complexity	27320	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
227698	chr9	93020651	93021950	+	0	NA	intron (NM_001369951, intron 13 of 17)	intron (NM_001369951, intron 13 of 17)	-6356	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
105740	chr18	2737421	2737980	+	0	NA	intron (NM_015295, intron 25 of 47)	AluJr|SINE|Alu	81974	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
147074	chr20	53753351	53753850	+	0	NA	Intergenic	Intergenic	122109	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
191488	chr6	11213421	11213680	+	0	NA	exon (NM_006403, exon 2 of 7)	exon (NM_006403, exon 2 of 7)	19118	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
198685	chr6	108071571	108071730	+	0	NA	intron (NM_014028, intron 1 of 5)	intron (NM_014028, intron 1 of 5)	3091	NM_014028	28962		NM_014028	ENSG00000081087	OSTM1	GIPN|GL|HSPC019|OPTB5	osteoclastogenesis associated transmembrane protein 1	protein-coding
19172	chr1	171805401	171806200	+	0	NA	Intergenic	Intergenic	24140	NM_014955	51603		NM_014955	ENSG00000010165	METTL13	5630401D24Rik|CGI-01|DFNB26|DFNB26M|DFNM1|EEF1AKNMT|KIAA0859|feat	methyltransferase 13, eEF1A N-terminus and K55	protein-coding
24838	chr10	377051	377350	+	0	NA	intron (NM_014974, intron 17 of 36)	intron (NM_014974, intron 17 of 36)	197206	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
153097	chr22	23496971	23497130	+	0	NA	Intergenic	MIR|SINE|MIR	-10070	NR_165489	388882		NR_110539	ENSG00000178248	FAM230I	LINC01658	family with sequence similarity 230 member I	ncRNA
113017	chr19	7923351	7923850	+	0	NA	TTS (NR_030717)	TTS (NR_030717)	2535	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
76513	chr15	74995101	74996200	+	0	NA	promoter-TSS (NM_001178112)	promoter-TSS (NM_001178112)	87	NM_001178111	192683		NM_138967	ENSG00000198794	SCAMP5	-	secretory carrier membrane protein 5	protein-coding
116079	chr19	17242771	17244050	+	0	NA	intron (NM_005234, intron 1 of 3)	intron (NM_005234, intron 1 of 3)	1932	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
119727	chr19	41222271	41222430	+	0	NA	intron (NM_021913, intron 4 of 19)	intron (NM_021913, intron 4 of 19)	3127	NM_021913	558		NM_001699	ENSG00000167601	AXL	ARK|AXL3|JTK11|Tyro7|UFO	AXL receptor tyrosine kinase	protein-coding
225388	chr9	35038901	35039300	+	0	NA	Intergenic	AluY|SINE|Alu	-1995	NM_001040411	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
192804	chr6	26596651	26597780	+	0	NA	exon (NM_013375, exon 1 of 3)	exon (NM_013375, exon 1 of 3)	262	NM_013375	29777		NM_013375	ENSG00000146109	ABT1	Esf2|hABT1	activator of basal transcription 1	protein-coding
24131	chr1	235822051	235822550	+	0	NA	intron (NM_001301365, intron 3 of 52)	MLT1H-int|LTR|ERVL-MaLR	30760	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
141045	chr2	238237951	238238250	+	0	NA	TTS (NM_001282434)	TTS (NM_001282434)	1938	NM_001282434	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
198418	chr6	106080771	106081130	+	0	NA	Intergenic	Intergenic	-5386	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
233503	chr9	138231821	138232750	+	0	NA	intron (NR_146178, intron 5 of 14)	intron (NR_146178, intron 5 of 14)	15429	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
228303	chr9	98115771	98116330	+	0	NA	intron (NM_014788, intron 1 of 5)	AluSz|SINE|Alu	3172	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
191615	chr6	12148551	12149050	+	0	NA	intron (NM_002114, intron 7 of 8)	MamRTE1|LINE|RTE-BovB	136488	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
33724	chr10	122268001	122268330	+	0	NA	Intergenic	Intergenic	-3131	NM_144587	118663		NM_144587	ENSG00000138152	BTBD16	C10orf87	BTB domain containing 16	protein-coding
87241	chr16	69752671	69753400	+	0	NA	intron (NM_014062, intron 2 of 8)	AluSz|SINE|Alu	1891	NM_014062	28987		NM_014062	ENSG00000141101	NOB1	ART-4|MST158|MSTP158|NOB1P|PSMD8BP1	NIN1 (RPN12) binding protein 1 homolog	protein-coding
37526	chr11	18627771	18627930	+	0	NA	intron (NM_194285, intron 1 of 5)	AluY|SINE|Alu	6492	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
5958	chr1	26899801	26901700	+	0	NA	promoter-TSS (NM_022078)	promoter-TSS (NM_022078)	-283	NM_022078	63906		NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
28208	chr10	44972921	44973280	+	0	NA	intron (NM_032023, intron 3 of 10)	intron (NM_032023, intron 3 of 10)	5709	NM_007021	11067		NM_007021	ENSG00000165507	DEPP1	C10orf10|DEPP|FIG|Fseg	DEPP autophagy regulator 1	protein-coding
132155	chr2	101745621	101746350	+	0	NA	intron (NM_001384572, intron 1 of 29)	(TG)n|Simple_repeat|Simple_repeat	47720	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
124098	chr19	55647651	55648750	+	0	NA	promoter-TSS (NM_001370471)	promoter-TSS (NM_001370471)	-12	NM_001370470	29903		NM_013301	ENSG00000173581	CCDC106	HSU79303|ZNF581	coiled-coil domain containing 106	protein-coding
78747	chr15	98866851	98866950	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	82474	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
127313	chr2	38776551	38777100	+	0	NA	Intergenic	MER41C|LTR|ERV1	-1385	NM_024775	79833		NM_024775	ENSG00000152147	GEMIN6	-	gem nuclear organelle associated protein 6	protein-coding
151077	chr21	44813321	44814180	+	0	NA	intron (NM_006936, intron 2 of 3)	intron (NM_006936, intron 2 of 3)	4312	NM_006936	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
181146	chr5	38461721	38461980	+	0	NA	intron (NM_182801, intron 4 of 5)	intron (NM_182801, intron 4 of 5)	16304	NM_182801	133584		NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding
110930	chr19	2802201	2802400	+	0	NA	intron (NM_003249, intron 5 of 12)	intron (NM_003249, intron 5 of 12)	16797	NM_003249	7064		NM_003249	ENSG00000172009	THOP1	EP24.15|MEPD_HUMAN|MP78|TOP	thimet oligopeptidase 1	protein-coding
18049	chr1	160622471	160622630	+	0	NA	intron (NM_003037, intron 4 of 6)	intron (NM_003037, intron 4 of 6)	24494	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
211859	chr7	111010801	111011000	+	0	NA	intron (NM_032549, intron 3 of 5)	intron (NM_032549, intron 3 of 5)	-80106	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
2512	chr1	9701501	9701700	+	0	NA	intron (NM_001350234, intron 2 of 23)	AluSx1|SINE|Alu	10133	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
41719	chr11	66655001	66655800	+	0	NA	intron (NM_001198844, intron 2 of 2)	AluJb|SINE|Alu	16697	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
45711	chr11	119084541	119085930	+	0	NA	intron (NM_001258209, intron 1 of 12)	intron (NM_001258209, intron 1 of 12)	354	NM_000190	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
31787	chr10	98267301	98267500	+	0	NA	intron (NM_032211, intron 1 of 14)	intron (NM_032211, intron 1 of 14)	794	NM_032211	84171		NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
136545	chr2	177351501	177351700	+	0	NA	intron (NR_026966, intron 1 of 8)	intron (NR_026966, intron 1 of 8)	-37718	NR_106767	102465255		NR_106767	ENSG00000278418	MIR6512	hsa-mir-6512|mir-6512	microRNA 6512	ncRNA
138356	chr2	203937451	203937550	+	0	NA	intron (NM_012092, intron 1 of 4)	intron (NM_012092, intron 1 of 4)	737	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123556	chr19	54415121	54415930	+	0	NA	promoter-TSS (NM_001005367).4	promoter-TSS (NM_001005367).4	61	NM_020659	57348		NM_020659	ENSG00000167614	TTYH1	-	tweety family member 1	protein-coding
192037	chr6	16473721	16474480	+	0	NA	intron (NM_000332, intron 7 of 8)	L2c|LINE|L2	235513	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
29057	chr10	67878701	67878900	+	0	NA	Intergenic	AluSg|SINE|Alu	-5856	NM_012238	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
96750	chr17	41698751	41699450	+	0	NA	Intergenic	AluSg|SINE|Alu	10215	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
183924	chr5	87399351	87399450	+	0	NA	non-coding (NR_157071, exon 6 of 8)	non-coding (NR_157071, exon 6 of 8)	13504	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
2446	chr1	9628701	9629300	+	0	NA	Intergenic	Intergenic	-22731	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
170181	chr3	183695001	183695200	+	0	NA	Intergenic	AluSx|SINE|Alu	-2697	NM_001351371	55689		NM_018023	ENSG00000163872	YEATS2	FAME4	YEATS domain containing 2	protein-coding
66380	chr14	61487051	61487500	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	82919	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
62225	chr13	98516601	98516800	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	5425	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
114882	chr19	13885151	13885250	+	0	NA	intron (NM_001345846, intron 6 of 7)	intron (NM_001345846, intron 6 of 7)	7951	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
3796	chr1	16716021	16716600	+	0	NA	intron (NR_026567, intron 1 of 10)	intron (NR_026567, intron 1 of 10)	3847	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
16022	chr1	152111921	152112630	+	0	NA	exon (NM_007113, exon 3 of 3)	exon (NM_007113, exon 3 of 3)	3179	NM_007113	7062		NM_007113	ENSG00000159450	TCHH	THH|THL|TRHY|UHS3	trichohyalin	protein-coding
106844	chr18	24033601	24034200	+	0	NA	intron (NM_001135993, intron 1 of 13)	Tigger6a|DNA|TcMar-Tigger	-18440	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
104905	chr17	81899471	81899830	+	0	NA	intron (NM_001002244, intron 3 of 3)	intron (NM_001002244, intron 3 of 3)	-2588	NM_148896	256933		NM_148896	ENSG00000183979	NPB	L7|PPL7|PPNPB	neuropeptide B	protein-coding
82613	chr16	18916201	18916830	+	0	NA	intron (NM_015092, intron 1 of 62)	AluYe5|SINE|Alu	9893	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
237362	chrX	118839321	118839680	+	0	NA	promoter-TSS (NR_110393)	promoter-TSS (NR_110393)	-56	NR_110393	101928287		NR_110393	ENSG00000203650	LINC01285	-	long intergenic non-protein coding RNA 1285	ncRNA
87958	chr16	79640501	79640900	+	0	NA	Intergenic	Intergenic	-39963	NM_001031804	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
70764	chr14	103427421	103428150	+	0	NA	intron (NM_002376, intron 2 of 15)	MER41B|LTR|ERV1	42370	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
178509	chr4	150826471	150826800	+	0	NA	intron (NM_001367550, intron 30 of 56)	Tigger2|DNA|TcMar-Tigger	188632	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
50477	chr12	47776401	47777030	+	0	NA	intron (NM_017842, intron 1 of 2)	intron (NM_017842, intron 1 of 2)	3477	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
197139	chr6	59523771	59523930	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1562404	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
201470	chr6	148756121	148756380	+	0	NA	intron (NM_005715, intron 1 of 7)	THE1C|LTR|ERVL-MaLR	9220	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
104655	chr17	81471921	81472200	+	0	NA	Intergenic	Intergenic	-20872	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
192210	chr6	17987051	17988230	+	0	NA	promoter-TSS (NM_001105566)	promoter-TSS (NM_001105566)	-5	NM_001243423	63971		NM_022113	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding
128535	chr2	60804501	60804780	+	0	NA	Intergenic	MER52D|LTR|ERV1	48372	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
133335	chr2	113907371	113908000	+	0	NA	intron (NM_001277140, intron 1 of 11)	Charlie17|DNA|hAT-Charlie	-16693	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
122117	chr19	48808851	48809450	+	0	NA	intron (NM_001284325, intron 1 of 11)	AluSz6|SINE|Alu	1879	NM_001284325	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
231256	chr9	129994371	129994530	+	0	NA	intron (NM_001363755, intron 2 of 15)	L1ME3A|LINE|L1	48739	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
227283	chr9	89385821	89386550	+	0	NA	intron (NM_001371200, intron 15 of 20)	intron (NM_001371200, intron 15 of 20)	67334	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
116046	chr19	17209351	17210230	+	0	NA	intron (NM_004145, intron 36 of 39)	intron (NM_004145, intron 36 of 39)	-5567	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
1583	chr1	3597401	3598180	+	0	NA	intron (NM_001409, intron 2 of 36)	MLT1C|LTR|ERVL-MaLR	13718	NM_001409	1953		NM_001409	ENSG00000162591	MEGF6	EGFL3	multiple EGF like domains 6	protein-coding
83037	chr16	22313551	22314250	+	0	NA	intron (NM_018119, intron 7 of 20).2	MER20|DNA|hAT-Charlie	16491	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
183199	chr5	76081901	76082450	+	0	NA	Intergenic	CpG	-1208	NM_001297716	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
25342	chr10	6269971	6271200	+	0	NA	Intergenic	L2c|LINE|L2	-55959	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
227912	chr9	94171901	94172200	+	0	NA	Intergenic	Intergenic	-3907	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
63697	chr14	21096701	21097180	+	0	NA	intron (NM_001102454, intron 1 of 4)	intron (NM_001102454, intron 1 of 4)	1715	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
27062	chr10	27149351	27149880	+	0	NA	intron (NM_001253866, intron 1 of 17)	AluSz|SINE|Alu	4769	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
24720	chr1	247409671	247410530	+	0	NA	Intergenic	Intergenic	-6073	NM_001243133	114548		NM_004895	ENSG00000162711	NLRP3	AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1	NLR family pyrin domain containing 3	protein-coding
194664	chr6	33633301	33634350	+	0	NA	promoter-TSS (NR_134628)	promoter-TSS (NR_134628)	-80	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
28186	chr10	44384351	44384650	+	0	NA	intron (NM_199168, intron 1 of 2)	CpG	597	NM_001277990	6387		NM_000609	ENSG00000107562	CXCL12	IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1	C-X-C motif chemokine ligand 12	protein-coding
10956	chr1	84176901	84177100	+	0	NA	intron (NM_001300915, intron 4 of 11)	intron (NM_001300915, intron 4 of 11)	-4632	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
183042	chr5	73312271	73312770	+	0	NA	Intergenic	Intergenic	-25386	NR_146627	105379033		NR_146627		LINC02230	-	long intergenic non-protein coding RNA 2230	ncRNA
150144	chr21	38505801	38506000	+	0	NA	intron (NR_111949, intron 3 of 4)	intron (NR_111949, intron 3 of 4)	-7396	NM_001136155	2078		NM_004449	ENSG00000157554	ERG	LMPHM14|erg-3|p55	ETS transcription factor ERG	protein-coding
124066	chr19	55602321	55602980	+	0	NA	exon (NM_153219, exon 2 of 2)	exon (NM_153219, exon 2 of 2)	2362	NM_153219	147807		NM_153219	ENSG00000171443	ZNF524	-	zinc finger protein 524	protein-coding
88135	chr16	81620351	81621050	+	0	NA	intron (NM_030629, intron 2 of 20)	intron (NM_030629, intron 2 of 20)	9352	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
162287	chr3	47403101	47403300	+	0	NA	intron (NM_001304482, intron 2 of 23)	AluYe5|SINE|Alu	22179	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
158374	chr22	50477901	50479100	+	0	NA	Intergenic	AluY|SINE|Alu	-3043	NM_001369882	79924		NM_024866	ENSG00000128165	ADM2	AM2|dJ579N16.4	adrenomedullin 2	protein-coding
62672	chr13	102603301	102604280	+	0	NA	intron (NR_160411, intron 1 of 28)	Tigger4a|DNA|TcMar-Tigger	6804	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
44692	chr11	111446121	111446900	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-28324	NR_046085	100132078		NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
210914	chr7	101214021	101214480	+	0	NA	intron (NM_001084, intron 6 of 18)	AluSx1|SINE|Alu	3331	NM_001084	8985		NM_001084	ENSG00000106397	PLOD3	LH3	procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	protein-coding
25708	chr10	8991821	8992080	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	93961	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
127019	chr2	36965921	36967400	+	0	NA	promoter-TSS (NM_003162)	promoter-TSS (NM_003162)	-124	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
95346	chr17	35804371	35805330	+	0	NA	Intergenic	Intergenic	-4634	NM_139215	8148		NM_003487	ENSG00000270647	TAF15	Npl3|RBP56|TAF2N|TAFII68	TATA-box binding protein associated factor 15	protein-coding
229822	chr9	125706471	125707600	+	0	NA	5' UTR (NM_001006621, exon 1 of 10)	5' UTR (NM_001006621, exon 1 of 10)	173	NM_001006617	79109		NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	MAPK associated protein 1	protein-coding
94379	chr17	28936471	28937300	+	0	NA	intron (NM_020889, intron 2 of 8)	intron (NM_020889, intron 2 of 8)	10610	NR_110803	101927018		NR_110803	ENSG00000265845	LOC101927018	-	uncharacterized LOC101927018	ncRNA
134151	chr2	134217321	134217580	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-36622	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
85522	chr16	50800971	50801330	+	0	NA	non-coding (NR_166071, exon 17 of 17)	non-coding (NR_166071, exon 17 of 17)	-5522	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
196941	chr6	52574221	52575500	+	0	NA	intron (NM_012288, intron 1 of 10)	intron (NM_012288, intron 1 of 10)	2200	NM_012288	9697		NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
89601	chr16	89291201	89291880	+	0	NA	intron (NM_013275, intron 4 of 12)	intron (NM_013275, intron 4 of 12)	-4588	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
98182	chr17	46103701	46104250	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSz|SINE|Alu	88807	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
221833	chr8	128118451	128118550	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-31616	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
84664	chr16	30746851	30746950	+	0	NA	Intergenic	L1MC4|LINE|L1	-1399	NM_001172432	5261		NM_000294	ENSG00000156873	PHKG2	GSD9C	phosphorylase kinase catalytic subunit gamma 2	protein-coding
220611	chr8	100921121	100921800	+	0	NA	intron (NM_001135702, intron 5 of 5)	intron (NM_001135702, intron 5 of 5)	29111	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
83814	chr16	28835301	28835800	+	0	NA	exon (NM_007245, exon 21 of 22)	exon (NM_007245, exon 21 of 22)	8457	NR_039872	100616256		NR_039872	ENSG00000283845	MIR4721	-	microRNA 4721	ncRNA
97066	chr17	42377971	42378480	+	0	NA	intron (NM_001369516, intron 1 of 23)	intron (NM_001369516, intron 1 of 23)	10217	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
164583	chr3	65837421	65837500	+	0	NA	intron (NM_001033057, intron 1 of 22)	intron (NM_001033057, intron 1 of 22)	-56356	NR_046575	100873983		NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA
137963	chr2	201179951	201180250	+	0	NA	Intergenic	Intergenic	-2798	NM_032976	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
175943	chr4	80507071	80507230	+	0	NA	intron (NM_001206997, intron 2 of 6)	intron (NM_001206997, intron 2 of 6)	171420	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
30462	chr10	79137421	79138380	+	0	NA	intron (NM_020338, intron 2 of 24)	intron (NM_020338, intron 2 of 24)	68934	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
194763	chr6	34067821	34068080	+	0	NA	intron (NM_001282847, intron 2 of 9)	intron (NM_001282847, intron 2 of 9)	38017	NM_001256813	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
14056	chr1	120774701	120775930	+	0	NA	intron (NR_157049, intron 2 of 4)	MIR3|SINE|MIR	-30241	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
213800	chr7	140922251	140922900	+	0	NA	intron (NM_001374244, intron 1 of 18)	intron (NM_001374244, intron 1 of 18)	1693	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
206829	chr7	37312501	37313100	+	0	NA	intron (NM_014800, intron 4 of 21)	intron (NM_014800, intron 4 of 21)	40868	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
160006	chr3	18387901	18388300	+	0	NA	intron (NM_001322873, intron 7 of 10)	intron (NM_001322873, intron 7 of 10)	37239	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
136827	chr2	182717401	182717850	+	0	NA	intron (NR_073367, intron 2 of 22)	intron (NR_073367, intron 2 of 22)	1368	NM_001271581	54431		NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
115645	chr19	16114851	16115150	+	0	NA	intron (NM_005370, intron 1 of 7)	intron (NM_005370, intron 1 of 7)	3111	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
36734	chr11	9260201	9260400	+	0	NA	intron (NM_001243254, intron 1 of 22)	intron (NM_001243254, intron 1 of 22)	5026	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
198554	chr6	106571301	106571700	+	0	NA	3' UTR (NM_001624, exon 20 of 20)	3' UTR (NM_001624, exon 20 of 20)	57998	NM_032730	84816		NM_032730	ENSG00000130347	RTN4IP1	NIMP|OPA10	reticulon 4 interacting protein 1	protein-coding
67071	chr14	67897401	67897730	+	0	NA	intron (NM_133509, intron 7 of 10)	L1MA10|LINE|L1	73973	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
119138	chr19	39374871	39375630	+	0	NA	intron (NM_001384588, intron 5 of 13)	L2a|LINE|L2	15856	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
100493	chr17	61904271	61905250	+	0	NA	intron (NM_020748, intron 8 of 24)	intron (NM_020748, intron 8 of 24)	23222	NM_020748	57508		NM_020748	ENSG00000108506	INTS2	INT2|KIAA1287	integrator complex subunit 2	protein-coding
80616	chr16	2966951	2967750	+	0	NA	exon (NM_024507, exon 7 of 8)	exon (NM_024507, exon 7 of 8)	-1998	NM_001284512	124222		NM_152341	ENSG00000162073	PAQR4	-	progestin and adipoQ receptor family member 4	protein-coding
125346	chr2	10867001	10867380	+	0	NA	Intergenic	AluSz|SINE|Alu	-11077	NR_110575	101929733		NR_110575	ENSG00000271952	LINC01954	-	long intergenic non-protein coding RNA 1954	ncRNA
33043	chr10	110851021	110851600	+	0	NA	Intergenic	Intergenic	19594	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
153779	chr22	29584451	29584750	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3487	NM_003634	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
159664	chr3	15362611	15363280	+	0	NA	Intergenic	MIR|SINE|MIR	-21565	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
220259	chr8	97675621	97676080	+	0	NA	intron (NM_178812, intron 2 of 11)	AluJb|SINE|Alu	31666	NM_001363136	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
116797	chr19	18526421	18526680	+	0	NA	Intergenic	Intergenic	-4480	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
156717	chr22	41784651	41784950	+	0	NA	intron (NM_152513, intron 26 of 30)	intron (NM_152513, intron 26 of 30)	-15879	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
40329	chr11	63915351	63915650	+	0	NA	intron (NM_173587, intron 2 of 11)	intron (NM_173587, intron 2 of 11)	1664	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
236975	chrX	101400171	101401450	+	0	NA	intron (NR_164783, intron 3 of 7)	intron (NR_164783, intron 3 of 7)	7115	NM_000169	2717		NM_000169	ENSG00000102393	GLA	GALA	galactosidase alpha	protein-coding
29019	chr10	63630201	63631550	+	0	NA	Intergenic	CpG	-108985	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
237260	chrX	110269901	110270300	+	0	NA	intron (NM_001171689, intron 3 of 7)	MLT1B|LTR|ERVL-MaLR	-45040	NR_004379	692226		NR_004379	ENSG00000208883	SNORD96B	U96b	small nucleolar RNA, C/D box 96B	snoRNA
86397	chr16	66712601	66712950	+	0	NA	Intergenic	Intergenic	-16032	NM_178818	146223		NM_178818	ENSG00000183723	CMTM4	CKLFSF4	CKLF like MARVEL transmembrane domain containing 4	protein-coding
66481	chr14	61600051	61600150	+	0	NA	intron (NR_039985, intron 1 of 2)	L1ME4b|LINE|L1	-29447	NR_110416	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
103915	chr17	79821301	79821900	+	0	NA	Intergenic	L2a|LINE|L2	-1852	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
187108	chr5	140399401	140399600	+	0	NA	Intergenic	AluSc|SINE|Alu	-2314	NM_001197030	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
88253	chr16	82627971	82628130	+	0	NA	intron (NM_001220490, intron 1 of 12)	CpG	1081	NM_001220492	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
160935	chr3	36895871	36896930	+	0	NA	intron (NM_014831, intron 3 of 22)	intron (NM_014831, intron 3 of 22)	48654	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
156560	chr22	41446221	41447800	+	0	NA	promoter-TSS (NM_016272)	promoter-TSS (NM_016272)	-209	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
149493	chr21	32430801	32431200	+	0	NA	intron (NM_001320744, intron 1 of 5)	THE1B|LTR|ERVL-MaLR	18294	NR_135467	59271		NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21	eva-1 homolog C	protein-coding
226725	chr9	75238301	75238950	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	150111	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
127980	chr2	46909771	46910080	+	0	NA	intron (NM_001171508, intron 1 of 3)	intron (NM_001171508, intron 1 of 3)	5881	NM_001171509	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
159763	chr3	16293471	16293700	+	0	NA	intron (NM_001352980, intron 6 of 9)	L1MB8|LINE|L1	28373	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
162751	chr3	49055771	49056130	+	0	NA	intron (NM_001320580, intron 4 of 10)	AluSx|SINE|Alu	-26552	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
97914	chr17	45136951	45137980	+	0	NA	intron (NM_001135705, intron 6 of 9)	intron (NM_001135705, intron 6 of 9)	1778	NM_001135707	79777		NM_024722	ENSG00000181513	ACBD4	HMFT0700	acyl-CoA binding domain containing 4	protein-coding
53769	chr12	68745451	68746950	+	0	NA	promoter-TSS (NM_001354997)	promoter-TSS (NM_001354997)	24	NM_018656	55508		NM_018656	ENSG00000175782	SLC35E3	BLOV1	solute carrier family 35 member E3	protein-coding
235118	chrX	40730251	40730550	+	0	NA	intron (NM_004229, intron 1 of 30)	intron (NM_004229, intron 1 of 30)	5142	NM_004229	9282		NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
41757	chr11	66690001	66690200	+	0	NA	exon (NM_006946, exon 28 of 38)	exon (NM_006946, exon 28 of 38)	-12213	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
190848	chr6	1615921	1616180	+	0	NA	Intergenic	Intergenic	6135	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
19094	chr1	171420071	171420830	+	0	NA	Intergenic	AluSz6|SINE|Alu	-65080	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
217607	chr8	29752301	29753230	+	0	NA	TTS (NR_125816)	TTS (NR_125816)	4456	NR_125815	101929450		NR_125814	ENSG00000253490	LINC02099	-	long intergenic non-protein coding RNA 2099	ncRNA
173261	chr4	7041651	7044950	+	0	NA	promoter-TSS (NM_152293)	promoter-TSS (NM_152293)	-72	NM_152293	93624		NM_152293	ENSG00000173011	TADA2B	ADA2(beta)|ADA2B	transcriptional adaptor 2B	protein-coding
114834	chr19	13826851	13827150	+	0	NA	intron (NM_023072, intron 11 of 12)	intron (NM_023072, intron 11 of 12)	9359	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
65212	chr14	49770921	49772130	+	0	NA	intron (NM_014315, intron 1 of 12)	intron (NM_014315, intron 1 of 12)	3372	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
156689	chr22	41671171	41672350	+	0	NA	Intergenic	AluSq2|SINE|Alu	17107	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
108104	chr18	62033151	62033460	+	0	NA	Intergenic	Intergenic	-140298	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
219409	chr8	70631151	70631850	+	0	NA	intron (NR_038881, intron 1 of 3)	L1PA6|LINE|L1	22923	NR_038881	286190		NR_038881	ENSG00000246366	LACTB2-AS1	-	LACTB2 antisense RNA 1	ncRNA
8802	chr1	42935121	42935730	+	0	NA	intron (NM_006516, intron 2 of 9)	intron (NM_006516, intron 2 of 9)	23443	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
112152	chr19	5624001	5625130	+	0	NA	intron (NM_001320571, intron 1 of 18)	intron (NM_001320571, intron 1 of 18)	1482	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
22661	chr1	223772871	223773030	+	0	NA	intron (NM_001748, intron 20 of 20)	intron (NM_001748, intron 20 of 20)	60411	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
5846	chr1	26718871	26719330	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	23085	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
145314	chr20	41070751	41071250	+	0	NA	intron (NM_003286, intron 3 of 20)	MIR|SINE|MIR	42178	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
16586	chr1	155017341	155018650	+	0	NA	TTS (NM_144622)	TTS (NM_144622)	15193	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
165968	chr3	107978451	107979130	+	0	NA	Intergenic	Intergenic	95585	NR_015394	285205		NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
231103	chr9	129806701	129807100	+	0	NA	intron (NR_134113, intron 2 of 4)	AluSx1|SINE|Alu	3716	NM_001317894	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
53538	chr12	67286221	67286480	+	0	NA	intron (NM_001329674, intron 3 of 15)	L1ME1|LINE|L1	16992	NM_001329676	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
217957	chr8	38233251	38233550	+	0	NA	intron (NR_156416, intron 2 of 16)	intron (NR_156416, intron 2 of 16)	1447	NM_001164232	23259		NM_015214	ENSG00000085788	DDHD2	SAMWD1|SPG54|iPLA(1)gamma|iPLA1A|iPLA1gamma|p125B	DDHD domain containing 2	protein-coding
130500	chr2	85591351	85591600	+	0	NA	intron (NM_006634, intron 1 of 2)	intron (NM_006634, intron 1 of 2)	-4270	NM_016494	51255		NM_016494	ENSG00000168894	RNF181	HSPC238	ring finger protein 181	protein-coding
146561	chr20	50008971	50009800	+	0	NA	Intergenic	Intergenic	26405	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
214810	chr7	151205971	151206130	+	0	NA	promoter-TSS (NM_001304419)	promoter-TSS (NM_001304419)	-554	NM_001304419	392843		NM_001304419	ENSG00000278685	IQCA1L	IQCA1P1	IQ motif containing with AAA domain 1 like	protein-coding
54186	chr12	79688771	79688930	+	0	NA	intron (NM_002583, intron 2 of 6)	intron (NM_002583, intron 2 of 6)	1730	NM_001354732	5074		NM_002583	ENSG00000177425	PAWR	PAR4|Par-4	pro-apoptotic WT1 regulator	protein-coding
108472	chr18	70640271	70640630	+	0	NA	intron (NR_160904, intron 2 of 2)	intron (NR_160904, intron 2 of 2)	10504	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
122471	chr19	49536321	49536580	+	0	NA	intron (NM_020650, intron 3 of 6)	AluSq2|SINE|Alu	8447	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
58720	chr12	132581501	132582000	+	0	NA	promoter-TSS (NR_106821)	promoter-TSS (NR_106821)	-247	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
74716	chr15	63123921	63124230	+	0	NA	intron (NM_171846, intron 2 of 4)	LTR13|LTR|ERVK	2214	NM_001288585	114294		NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
25035	chr10	3759571	3759730	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	25559	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
90260	chr17	951371	951730	+	0	NA	intron (NM_022463, intron 1 of 7)	intron (NM_022463, intron 1 of 7)	28226	NM_022463	64359		NM_022463	ENSG00000167693	NXN	NRX|RRS2|TRG-4	nucleoredoxin	protein-coding
11407	chr1	89700671	89701030	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	67730	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
76432	chr15	74797171	74797330	+	0	NA	intron (NM_001354988, intron 3 of 14)	L1ME3A|LINE|L1	-8493	NR_039738	100616183		NR_039738	ENSG00000264386	MIR4513	-	microRNA 4513	ncRNA
186491	chr5	138214871	138215130	+	0	NA	Intergenic	AluJo|SINE|Alu	-1677	NM_004661	8697		NM_004661	ENSG00000094880	CDC23	ANAPC8|APC8|CUT23	cell division cycle 23	protein-coding
104036	chr17	80130921	80131500	+	0	NA	Intergenic	Intergenic	15918	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
145087	chr20	38677401	38677850	+	0	NA	Intergenic	Intergenic	-46861	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
76254	chr15	74007651	74008250	+	0	NA	intron (NM_033238, intron 2 of 8)	intron (NM_033238, intron 2 of 8)	13234	NM_033244	5371		NM_002675	ENSG00000140464	PML	MYL|PP8675|RNF71|TRIM19	PML nuclear body scaffold	protein-coding
51892	chr12	53564171	53564730	+	0	NA	intron (NR_159377, intron 2 of 14)	intron (NR_159377, intron 2 of 14)	50466	NR_046221	100652999		NR_046221	ENSG00000257550	LOC100652999	-	uncharacterized LOC100652999	ncRNA
165996	chr3	108123871	108125300	+	0	NA	promoter-TSS (NR_110030)	promoter-TSS (NR_110030)	-479	NR_110030	101929623		NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA
189563	chr5	175444271	175445480	+	0	NA	promoter-TSS (NM_000794)	promoter-TSS (NM_000794)	-693	NM_000794	1812		NM_000794	ENSG00000184845	DRD1	D1R|DADR|DRD1A	dopamine receptor D1	protein-coding
51923	chr12	53697971	53698350	+	0	NA	Intergenic	(TCT)n|Simple_repeat|Simple_repeat	-21830	NM_001369754	517		NM_005176	ENSG00000135390	ATP5MC2	ATP5A|ATP5G2	ATP synthase membrane subunit c locus 2	protein-coding
32799	chr10	109851701	109851900	+	0	NA	Intergenic	Intergenic	71446	NM_001324136	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
90295	chr17	1051501	1051700	+	0	NA	intron (NM_001282149, intron 9 of 17).3	intron (NM_001282149, intron 9 of 17).3	-19769	NM_001256847	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
186760	chr5	139326171	139326800	+	0	NA	intron (NM_199189, intron 17 of 17)	AluSq2|SINE|Alu	-15347	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
201863	chr6	150598121	150598380	+	0	NA	Intergenic	AluJr|SINE|Alu	-1635	NM_001329804	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
179826	chr5	467471	467830	+	0	NA	TTS (NM_007277)	TTS (NM_007277)	5315	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
138864	chr2	216695601	216696000	+	0	NA	promoter-TSS (NM_000599)	promoter-TSS (NM_000599)	-251	NM_000599	3488		NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
92338	chr17	8161651	8162400	+	0	NA	intron (NM_001330125, intron 2 of 4)	intron (NM_001330125, intron 2 of 4)	851	NM_001330125	6844		NM_014232	ENSG00000220205	VAMP2	NEDHAHM|SYB2|VAMP-2	vesicle associated membrane protein 2	protein-coding
93858	chr17	21010971	21011330	+	0	NA	intron (NM_015276, intron 8 of 12)	intron (NM_015276, intron 8 of 12)	31861	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
139391	chr2	222298151	222298450	+	0	NA	non-coding (NR_161172, exon 1 of 2)	non-coding (NR_161172, exon 1 of 2)	153	NR_161172	151278		NM_153038	ENSG00000163081	CCDC140	-	CCDC140 long non-coding RNA	ncRNA
192312	chr6	21596771	21597280	+	0	NA	3' UTR (NM_003107, exon 1 of 1)	3' UTR (NM_003107, exon 1 of 1)	3274	NM_003107	6659		NM_003107	ENSG00000124766	SOX4	CSS10|EVI16	SRY-box transcription factor 4	protein-coding
85273	chr16	48583571	48584130	+	0	NA	intron (NM_153029, intron 1 of 6)	LTR37-int|LTR|ERV1	26330	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
71918	chr15	22788221	22788930	+	0	NA	intron (NM_144599, intron 1 of 4)	L1MC3|LINE|L1	1931	NM_144599	123606		NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
205481	chr7	17640701	17640900	+	0	NA	Intergenic	Intergenic	-81891	NR_110013	101927630		NR_110013	ENSG00000236039	LINC02889	-	long intergenic non-protein coding RNA 2889	ncRNA
65724	chr14	53108551	53109850	+	0	NA	intron (NM_030637, intron 1 of 11)	L1MC4|LINE|L1	44123	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
166221	chr3	112090471	112090630	+	0	NA	intron (NM_024616, intron 1 of 5)	L3b|LINE|CR1	4161	NM_024616	79669		NM_024616	ENSG00000114529	C3orf52	HYPT15|TTMP	chromosome 3 open reading frame 52	protein-coding
108565	chr18	74951101	74951300	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	254313	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
83680	chr16	28402621	28403370	+	0	NA	intron (NM_001286478, intron 2 of 21)	(A)n|Simple_repeat|Simple_repeat	846	NM_001317857	728689		NM_001099661	ENSG00000205609	EIF3CL	-	eukaryotic translation initiation factor 3 subunit C like	protein-coding
165640	chr3	101796951	101797250	+	0	NA	intron (NR_145993, intron 4 of 6)	HAL1ME|LINE|L1	17436	NM_001348998	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
222255	chr8	133249221	133249900	+	0	NA	intron (NM_001374844, intron 10 of 15)	intron (NM_001374844, intron 10 of 15)	47130	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
17618	chr1	156926201	156926800	+	0	NA	intron (NM_144702, intron 5 of 14)	MLT1F2|LTR|ERVL-MaLR	5868	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
210233	chr7	99371521	99371950	+	0	NA	Intergenic	Intergenic	-2995	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
82515	chr16	17491051	17491350	+	0	NA	Intergenic	Intergenic	-20240	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
57245	chr12	121560721	121561000	+	0	NA	intron (NM_001005366, intron 4 of 22)	intron (NM_001005366, intron 4 of 22)	19386	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
12953	chr1	110873871	110874050	+	0	NA	intron (NM_001040033, intron 2 of 8)	intron (NM_001040033, intron 2 of 8)	812	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
195749	chr6	39933101	39933300	+	0	NA	intron (NM_001358530, intron 1 of 10)	MIRb|SINE|MIR	1023	NM_001358534	4337		NM_005942	ENSG00000124615	MOCS1	MIG11|MOCOD|MOCS1A|MOCS1B	molybdenum cofactor synthesis 1	protein-coding
188642	chr5	157229571	157230150	+	0	NA	intron (NM_005546, intron 7 of 16)	AluSp|SINE|Alu	-36263	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
89177	chr16	88553851	88554480	+	0	NA	Intergenic	Intergenic	7818	NR_146877	400555		NM_001001682		ZC3H18-AS1	C16orf85|LINC00859	ZC3H18 antisense RNA 1 (head to head)	ncRNA
85086	chr16	33016771	33016930	+	0	NA	Intergenic	L1P4|LINE|L1	-131708	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
93151	chr17	17754101	17754530	+	0	NA	intron (NM_030665, intron 2 of 5)	AluSp|SINE|Alu	11987	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
132881	chr2	111196171	111196680	+	0	NA	non-coding (NR_136164, exon 5 of 5)	non-coding (NR_136164, exon 5 of 5)	75511	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
186517	chr5	138351171	138351550	+	0	NA	Intergenic	Intergenic	-1325	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
155207	chr22	37845421	37845680	+	0	NA	intron (NM_001349853, intron 1 of 7)	intron (NM_001349853, intron 1 of 7)	-1103	NR_146280	129138		NM_138797	ENSG00000100124	ANKRD54	LIAR	ankyrin repeat domain 54	protein-coding
177916	chr4	131352851	131352950	+	0	NA	Intergenic	L1PA3|LINE|L1	-411938	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
162939	chr3	49474721	49474980	+	0	NA	intron (NM_001177634, intron 2 of 5)	AluY|SINE|Alu	4583	NM_004393	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
183579	chr5	80173801	80174000	+	0	NA	intron (NM_001174072, intron 5 of 11)	L2|LINE|L2	82148	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
174969	chr4	49519651	49519950	+	0	NA	Intergenic	TAR1|Satellite|telo	533158	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
123052	chr19	51328651	51328750	+	0	NA	exon (NM_001101372, exon 8 of 8)	exon (NM_001101372, exon 8 of 8)	13424	NM_001163922	147645		NM_001163922	ENSG00000186806	VSIG10L	-	V-set and immunoglobulin domain containing 10 like	protein-coding
108	chr1	485101	485500	+	0	NA	Intergenic	Intergenic	10145	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
181599	chr5	43511001	43511200	+	0	NA	intron (NM_198566, intron 1 of 12)	SVA_A|Retroposon|SVA	4048	NM_198566	375444		NM_198566	ENSG00000172244	C5orf34	-	chromosome 5 open reading frame 34	protein-coding
93410	chr17	18377601	18378080	+	0	NA	promoter-TSS (NM_001145127).2	promoter-TSS (NM_001145127).2	62	NM_001145127	645027		NM_001145127	ENSG00000214860	EVPLL	-	envoplakin like	protein-coding
139897	chr2	230712021	230713400	+	0	NA	promoter-TSS (NM_001130849)	promoter-TSS (NM_001130849)	-132	NM_016289	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
209899	chr7	91948671	91948830	+	0	NA	intron (NM_147185, intron 1 of 49)	AluSq2|SINE|Alu	7888	NM_005751	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
170961	chr3	194472271	194472900	+	0	NA	intron (NR_164666, intron 2 of 32)	intron (NR_164666, intron 2 of 32)	-4346	NM_024524	79572		NM_024524	ENSG00000133657	ATP13A3	AFURS1|PPH5	ATPase 13A3	protein-coding
19324	chr1	173433771	173434130	+	0	NA	intron (NR_125960, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	27412	NR_125960	101928673		NR_125960	ENSG00000203739	PRDX6-AS1	-	PRDX6 antisense RNA 1	ncRNA
166843	chr3	123066751	123067800	+	0	NA	intron (NR_028444, intron 1 of 15)	CpG	250	NM_006810	10954		NM_006810	ENSG00000065485	PDIA5	PDIR	protein disulfide isomerase family A member 5	protein-coding
85753	chr16	56780551	56780930	+	0	NA	intron (NM_014669, intron 3 of 21)	intron (NM_014669, intron 3 of 21)	-1089	NM_001242795	9688		NM_014669	ENSG00000102900	NUP93	NIC96	nucleoporin 93	protein-coding
152108	chr22	19889951	19890250	+	0	NA	intron (NR_147957, intron 10 of 16)	intron (NR_147957, intron 10 of 16)	-35226	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
232030	chr9	133382121	133383300	+	0	NA	intron (NM_153710, intron 2 of 17)	(GTG)n|Simple_repeat|Simple_repeat	-4761	NM_001280788	6836		NM_033161	ENSG00000148248	SURF4	ERV29	surfeit 4	protein-coding
89379	chr16	88797951	88798600	+	0	NA	Intergenic	Intergenic	-5514	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
113332	chr19	8607401	8608000	+	0	NA	intron (NM_030957, intron 2 of 25)	L3|LINE|CR1	3015	NM_030957	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
99664	chr17	50722821	50723100	+	0	NA	intron (NM_001330330, intron 1 of 10)	intron (NM_001330330, intron 1 of 10)	3357	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
3448	chr1	15915951	15917580	+	0	NA	intron (NM_015001, intron 6 of 14)	intron (NM_015001, intron 6 of 14)	59336	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
149215	chr21	25457301	25457980	+	0	NA	Intergenic	Intergenic	-25939	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
215416	chr7	157612651	157614250	+	0	NA	intron (NM_130842, intron 14 of 21)	CpG	-39028	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
44999	chr11	116990101	116990300	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	108228	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
62979	chr13	112297751	112297850	+	0	NA	Intergenic	Intergenic	-15667	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
8839	chr1	43270651	43271150	+	0	NA	intron (NM_144626, intron 2 of 3)	intron (NM_144626, intron 2 of 3)	917	NM_144626	128218		NM_144626	ENSG00000179178	TMEM125	-	transmembrane protein 125	protein-coding
94601	chr17	29740121	29740680	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	21032	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
2798	chr1	10931901	10932830	+	0	NA	Intergenic	L1MB3|LINE|L1	34322	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
60705	chr13	44050421	44050700	+	0	NA	Intergenic	(AAT)n|Simple_repeat|Simple_repeat	28225	NR_026955	121838		NR_026955		NRAD1	LINC00284|NCRNA00284	non-coding RNA in the aldehyde dehydrogenase 1A pathway	ncRNA
178150	chr4	142324601	142324800	+	0	NA	intron (NM_001385334, intron 6 of 24)	L1MEg2|LINE|L1	-18756	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
186336	chr5	134736821	134737180	+	0	NA	Intergenic	AluJb|SINE|Alu	-1548	NM_001745	819		NM_001745	ENSG00000164615	CAMLG	CAML|CDG2Z|GET2	calcium modulating ligand	protein-coding
185864	chr5	132553401	132554550	+	0	NA	Intergenic	L1ME1|LINE|L1	-3002	NM_005732	10111		NM_005732	ENSG00000113522	RAD50	NBSLD|RAD502|hRad50	RAD50 double strand break repair protein	protein-coding
226892	chr9	78294101	78294450	+	0	NA	Intergenic	Intergenic	-2850	NM_021154	29968		NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding
202389	chr6	157835071	157835230	+	0	NA	intron (NM_016224, intron 1 of 17)	AluSz|SINE|Alu	11904	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
132387	chr2	105777821	105778880	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	33287	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
170855	chr3	191328751	191330100	+	0	NA	promoter-TSS (NM_178335)	promoter-TSS (NM_178335)	31	NM_174908	152137		NM_174908	ENSG00000152492	CCDC50	C3orf6|DFNA44|YMER	coiled-coil domain containing 50	protein-coding
21767	chr1	206917401	206917680	+	0	NA	intron (NM_001193338, intron 1 of 6)	L2|LINE|L2	4401	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
98558	chr17	47697751	47698230	+	0	NA	intron (NM_014726, intron 3 of 8)	MIRb|SINE|MIR	2726	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
223959	chr9	1727401	1727650	+	0	NA	Intergenic	L2b|LINE|L2	-287822	NM_139045	6595		NM_003070	ENSG00000080503	SMARCA2	BAF190|BIS|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
107130	chr18	35108551	35108850	+	0	NA	intron (NR_046177, intron 4 of 6)	L1PA8A|LINE|L1	67287	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
67803	chr14	73770201	73770950	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-10272	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
207636	chr7	45031651	45032450	+	0	NA	intron (NM_001029835, intron 1 of 9)	intron (NM_001029835, intron 1 of 9)	4416	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
39745	chr11	61826351	61826650	+	0	NA	intron (NM_001281502, intron 1 of 11)	intron (NM_001281502, intron 1 of 11)	-1800	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
177662	chr4	121380251	121380950	+	0	NA	exon (NM_198179, exon 1 of 6)	exon (NM_198179, exon 1 of 6)	418	NM_198179	84109		NM_198179	ENSG00000186867	QRFPR	AQ27|GPR103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
135642	chr2	168247501	168248250	+	0	NA	promoter-TSS (NM_013233)	promoter-TSS (NM_013233)	-280	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
164755	chr3	69082151	69082250	+	0	NA	Intergenic	Intergenic	-1827	NM_001363861	9039		NM_003968	ENSG00000144744	UBA3	NAE2|UBE1C|hUBA3	ubiquitin like modifier activating enzyme 3	protein-coding
139436	chr2	223699471	223699730	+	0	NA	Intergenic	Intergenic	-97239	NM_003469	7857		NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding
100215	chr17	59165721	59166300	+	0	NA	intron (NM_018304, intron 1 of 9)	intron (NM_018304, intron 1 of 9)	10264	NM_018304	55771		NM_018304	ENSG00000068489	PRR11	-	proline rich 11	protein-coding
68712	chr14	90677651	90677950	+	0	NA	intron (NM_001010854, intron 8 of 19)	intron (NM_001010854, intron 8 of 19)	-19533	NR_135190	105370622		NR_135190	ENSG00000258716	LOC105370622	-	uncharacterized LOC105370622	ncRNA
76615	chr15	75447871	75448430	+	0	NA	intron (NM_001145357, intron 1 of 20)	AluJo|SINE|Alu	3540	NM_015477	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
86027	chr16	57529621	57530900	+	0	NA	intron (NM_033212, intron 1 of 8)	intron (NM_033212, intron 1 of 8)	6311	NM_033212	92922		NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
42651	chr11	72436121	72436380	+	0	NA	Intergenic	AluY|SINE|Alu	-1566	NM_001258394	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
56467	chr12	116067701	116067900	+	0	NA	intron (NM_015335, intron 4 of 30)	MIRb|SINE|MIR	80854	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
40099	chr11	62799301	62801350	+	0	NA	exon (NM_001081491, exon 10 of 20)	exon (NM_001081491, exon 10 of 20)	5115	NM_001081491	10482		NM_006362	ENSG00000162231	NXF1	MEX67|TAP	nuclear RNA export factor 1	protein-coding
153746	chr22	29327921	29328580	+	0	NA	3' UTR (NM_001166019, exon 21 of 21)	3' UTR (NM_001166019, exon 21 of 21)	5008	NR_003686	100113380		NR_003686	ENSG00000239127	SNORD125	-	small nucleolar RNA, C/D box 125	snoRNA
216088	chr8	10976971	10977480	+	0	NA	intron (NM_173683, intron 1 of 2)	MIR3|SINE|MIR	58077	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
125379	chr2	11157571	11158130	+	0	NA	intron (NM_001282710, intron 1 of 5)	intron (NM_001282710, intron 1 of 5)	2383	NM_152391	130814		NM_152391	ENSG00000162976	SLC66A3	C2orf22|PQLC3	solute carrier family 66 member 3	protein-coding
223609	chr8	144313421	144314330	+	0	NA	TTS (NM_012079)	TTS (NM_012079)	3440	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
110803	chr19	2461601	2462650	+	0	NA	promoter-TSS (NR_134931)	promoter-TSS (NR_134931)	60	NR_134931	101928602		NR_134931	ENSG00000267201	LINC01775	-	long intergenic non-protein coding RNA 1775	ncRNA
76774	chr15	77000971	77001500	+	0	NA	intron (NR_135552, intron 1 of 11)	intron (NR_135552, intron 1 of 11)	6109	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
163235	chr3	50266671	50267800	+	0	NA	promoter-TSS (NM_004636)	promoter-TSS (NM_004636)	136	NR_110702	101928931		NR_110702		SEMA3B-AS1	-	SEMA3B antisense RNA 1 (head to head)	ncRNA
82134	chr16	14733251	14733500	+	0	NA	Intergenic	CpG	-17438	NM_001277324	642799		NM_001277324	ENSG00000254852	NPIPA2	NPIP|NPIPA1	nuclear pore complex interacting protein family member A2	protein-coding
183546	chr5	80108821	80109080	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-25285	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
193085	chr6	28848751	28849150	+	0	NA	Intergenic	L1PA5|LINE|L1	14727	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
221900	chr8	128629171	128629730	+	0	NA	Intergenic	Intergenic	-64771	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
172859	chr4	3296701	3296900	+	0	NA	Intergenic	Intergenic	-17347	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
207114	chr7	41942771	41943350	+	0	NA	Intergenic	Intergenic	-239970	NM_002192	3624		NM_002192	ENSG00000122641	INHBA	EDF|FRP	inhibin subunit beta A	protein-coding
234513	chrX	19515001	19515680	+	0	NA	promoter-TSS (NM_001001671)	promoter-TSS (NM_001001671)	-79	NM_001001671	389840		NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
35697	chr11	1920651	1921880	+	0	NA	intron (NM_001363561, intron 1 of 16)	intron (NM_001363561, intron 1 of 16)	1562	NM_006757	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
114007	chr19	10866171	10866750	+	0	NA	intron (NM_001136482, intron 6 of 6)	AluSz|SINE|Alu	-5093	NM_199141	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
213933	chr7	142627351	142627480	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-38884	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
167551	chr3	129343751	129344600	+	0	NA	Intergenic	CpG	-27889	NM_006026	8971		NM_006026	ENSG00000184897	H1-10	H1.10|H1FX|H1X	H1.10 linker histone	protein-coding
41277	chr11	65850421	65851000	+	0	NA	intron (NM_152760, intron 5 of 12)	intron (NM_152760, intron 5 of 12)	7470	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
20482	chr1	198635671	198635830	+	0	NA	Intergenic	L2b|LINE|L2	-3218	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
111687	chr19	4269721	4271080	+	0	NA	Intergenic	AluJb|SINE|Alu	-8669	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
204928	chr7	6228821	6229180	+	0	NA	intron (NM_004227, intron 1 of 12)	AmnSINE1|SINE|5S-Deu-L2	43624	NM_001367581	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
195776	chr6	40478871	40479230	+	0	NA	intron (NM_020737, intron 1 of 2)	MIR|SINE|MIR	100713	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
221650	chr8	125940101	125940500	+	0	NA	TTS (NR_038446)	TTS (NR_038446)	10897	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
102219	chr17	75232721	75233180	+	0	NA	exon (NM_001303276, exon 14 of 18)	exon (NM_001303276, exon 14 of 18)	27271	NM_024844	79902		NM_024844	ENSG00000125450	NUP85	FROUNT|NPHS17|Nup75	nucleoporin 85	protein-coding
143448	chr20	30356801	30357100	+	0	NA	Intergenic	Intergenic	-20214	NR_003579	284802		NM_207350		FRG1BP	C20orf80|FRG1B|bA348I14.2	FSHD region gene 1 family member B, pseudogene	pseudo
232217	chr9	134368901	134369100	+	0	NA	intron (NM_002957, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	-10295	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
34403	chr10	132387701	132388530	+	0	NA	Intergenic	CpG	-9085	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
175457	chr4	71553671	71553850	+	0	NA	intron (NM_003759, intron 17 of 22)	intron (NM_003759, intron 17 of 22)	214740	NM_003759	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
95578	chr17	36948201	36949680	+	0	NA	promoter-TSS (NM_012138)	promoter-TSS (NM_012138)	-14	NM_012138	26574		NM_012138	ENSG00000275700	AATF	BFR2|CHE-1|CHE1|DED	apoptosis antagonizing transcription factor	protein-coding
13032	chr1	111218501	111219030	+	0	NA	Intergenic	L1MEc|LINE|L1	-8894	NM_001025197	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
116542	chr19	18207601	18207800	+	0	NA	TTS (NM_001369701)	TTS (NM_001369701)	2970	NR_134910	102725254		NR_134910	ENSG00000268650	LOC102725254	-	uncharacterized LOC102725254	ncRNA
121156	chr19	46361321	46362300	+	0	NA	intron (NM_001204284, intron 2 of 11)	LTR49-int|LTR|ERV1	14723	NM_001204284	5536		NM_006247	ENSG00000011485	PPP5C	PP5|PPP5|PPT	protein phosphatase 5 catalytic subunit	protein-coding
124475	chr19	58547321	58547980	+	0	NA	exon (NM_005762, exon 5 of 17)	exon (NM_005762, exon 5 of 17)	-2635	NR_106865	102465976		NR_106865	ENSG00000275924	MIR6807	hsa-mir-6807	microRNA 6807	ncRNA
137183	chr2	191136421	191136880	+	0	NA	intron (NM_003151, intron 3 of 23)	AluSz|SINE|Alu	14344	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
125073	chr2	9650201	9650600	+	0	NA	Intergenic	MIRc|SINE|MIR	-19403	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
104584	chr17	81390271	81390630	+	0	NA	Intergenic	Intergenic	-5007	NM_001377448	57597		NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
158697	chr3	5426371	5426650	+	0	NA	Intergenic	Intergenic	-176255	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
118617	chr19	36848771	36852350	+	0	NA	promoter-TSS (NR_038362)	promoter-TSS (NR_038362)	202	NM_003419	25850		NM_003419	ENSG00000251247	ZNF345	HZF10	zinc finger protein 345	protein-coding
55220	chr12	101811371	101811530	+	0	NA	intron (NM_024312, intron 1 of 20)	MSTA|LTR|ERVL-MaLR	19509	NM_024312	79158		NM_024312	ENSG00000111670	GNPTAB	GNPTA|ICD	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein-coding
19968	chr1	184930451	184931000	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	43783	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
27903	chr10	41889321	41889600	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	478585	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
131061	chr2	88625201	88625700	+	0	NA	promoter-TSS (NM_001313915)	promoter-TSS (NM_001313915)	-521	NM_001313915	9451		NM_004836	ENSG00000172071	EIF2AK3	PEK|PERK|WRS	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding
132014	chr2	100641651	100642150	+	0	NA	Intergenic	Intergenic	38161	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
168256	chr3	141413001	141413700	+	0	NA	intron (NM_001376165, intron 3 of 4)	intron (NM_001376165, intron 3 of 4)	10336	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
38166	chr11	36290451	36290550	+	0	NA	Intergenic	Intergenic	-1076	NM_001307937	29099		NM_014186	ENSG00000110442	COMMD9	C11orf55|HSPC166|LINC00610	COMM domain containing 9	protein-coding
134885	chr2	148886271	148886630	+	0	NA	intron (NM_004522, intron 1 of 25)	intron (NM_004522, intron 1 of 25)	11223	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
160502	chr3	30628351	30628730	+	0	NA	intron (NM_001024847, intron 2 of 7)	(T)n|Simple_repeat|Simple_repeat	21939	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
22879	chr1	225784271	225784430	+	0	NA	intron (NM_003133, intron 2 of 2)	AluY|SINE|Alu	6524	NM_003133	6726		NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding
118789	chr19	38400601	38401230	+	0	NA	Intergenic	AluJr|SINE|Alu	-2220	NM_174905	147965		NM_174905	ENSG00000130244	FAM98C	-	family with sequence similarity 98 member C	protein-coding
37082	chr11	12814821	12815080	+	0	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	140529	NM_021961	7003		NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
86199	chr16	57995851	57995950	+	0	NA	3' UTR (NM_001384367, exon 3 of 3)	3' UTR (NM_001384367, exon 3 of 3)	-3703	NM_001330568	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
197425	chr6	73588301	73588700	+	0	NA	Intergenic	Intergenic	65492	NM_001382635	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
54208	chr12	79897601	79897930	+	0	NA	intron (NM_001143885, intron 2 of 25)	intron (NM_001143885, intron 2 of 25)	16146	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
6788	chr1	30777351	30777650	+	0	NA	Intergenic	Intergenic	-19726	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
90486	chr17	1398201	1398500	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	1872	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
40127	chr11	62828001	62828200	+	0	NA	intron (NM_001244666, intron 2 of 10)	intron (NM_001244666, intron 2 of 10)	3951	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
58131	chr12	124900701	124900900	+	0	NA	Intergenic	AluSp|SINE|Alu	13850	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
81970	chr16	11872771	11873130	+	0	NA	3' UTR (NM_002094, exon 15 of 15)	3' UTR (NM_002094, exon 15 of 15)	-21408	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
202083	chr6	154261751	154262080	+	0	NA	intron (NM_001130700, intron 3 of 11)	L2c|LINE|L2	68166	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
151799	chr22	18198771	18199130	+	0	NA	intron (NR_136570, intron 3 of 11)	(AC)n|Simple_repeat|Simple_repeat	6959	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
111719	chr19	4331951	4332350	+	0	NA	intron (NM_001013841, intron 3 of 12)	MIRb|SINE|MIR	6677	NM_001013841	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
68224	chr14	76926171	76927780	+	0	NA	Intergenic	Intergenic	-32663	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
141469	chr2	241071271	241071630	+	0	NA	TTS (NR_138463)	TTS (NR_138463)	30837	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
15527	chr1	150515221	150516450	+	0	NA	promoter-TSS (NR_051960)	promoter-TSS (NR_051960)	78	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
223731	chr8	144475851	144476150	+	0	NA	promoter-TSS (NM_003923)	promoter-TSS (NM_003923)	-151	NM_003923	8928		NM_003923	ENSG00000160973	FOXH1	FAST-1|FAST1	forkhead box H1	protein-coding
36472	chr11	6203271	6203830	+	0	NA	Intergenic	Intergenic	-2007	NM_173525	160298		NM_173525	ENSG00000180878	C11orf42	-	chromosome 11 open reading frame 42	protein-coding
58838	chr12	132873771	132874130	+	0	NA	intron (NM_018223, intron 3 of 17)	intron (NM_018223, intron 3 of 17)	13655	NM_001161346	55743		NM_018223	ENSG00000072609	CHFR	RNF116|RNF196	checkpoint with forkhead and ring finger domains	protein-coding
224251	chr9	5918671	5918830	+	0	NA	TTS (NM_001017969)	TTS (NM_001017969)	27861	NM_005511	2315		NM_005511	ENSG00000120215	MLANA	MART-1|MART1	melan-A	protein-coding
88773	chr16	87203101	87203380	+	0	NA	Intergenic	L1MD2|LINE|L1	-8875	NR_110939	101928708		NR_110939	ENSG00000261095	LOC101928708	-	uncharacterized LOC101928708	ncRNA
214204	chr7	148695451	148695750	+	0	NA	Intergenic	Intergenic	-2156	NM_001370660	8454		NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding
4757	chr1	23521521	23522130	+	0	NA	promoter-TSS (NR_110799)	promoter-TSS (NR_110799)	-105	NR_110799	101928163		NR_110799		LOC101928163	-	uncharacterized LOC101928163	ncRNA
200385	chr6	134276601	134277300	+	0	NA	intron (NM_001143676, intron 1 of 13)	AluJb|SINE|Alu	41108	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
59605	chr13	27712371	27712530	+	0	NA	Intergenic	Intergenic	-80033	NM_145657	219409		NM_145657	ENSG00000169840	GSX1	GSH1|Gsh-1	GS homeobox 1	protein-coding
124562	chr2	529451	529630	+	0	NA	Intergenic	L1MC4|LINE|L1	-16265	NR_146470	101927362		NR_146470	ENSG00000225942	LINC01875	-	long intergenic non-protein coding RNA 1875	ncRNA
217365	chr8	27897101	27897930	+	0	NA	intron (NM_173833, intron 7 of 8)	intron (NM_173833, intron 7 of 8)	-11399	NR_036249	100422828		NR_036249	ENSG00000265847	MIR4287	-	microRNA 4287	ncRNA
183742	chr5	81288251	81288700	+	0	NA	intron (NR_034122, intron 1 of 3)	AluSx1|SINE|Alu	13094	NR_034122	100131067		NR_034121	ENSG00000247572	CKMT2-AS1	-	CKMT2 antisense RNA 1	ncRNA
161504	chr3	42555101	42555300	+	0	NA	intron (NM_032970, intron 6 of 6)	AluY|SINE|Alu	-22594	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
133863	chr2	128340751	128341250	+	0	NA	Intergenic	(GTG)n|Simple_repeat|Simple_repeat	-22132	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
127687	chr2	43201751	43202550	+	0	NA	Intergenic	AluJb|SINE|Alu	24456	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
217900	chr8	37889671	37890400	+	0	NA	intron (NM_025151, intron 1 of 4)	AluSx1|SINE|Alu	9462	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
130557	chr2	85703771	85703930	+	0	NA	Intergenic	AluSx1|SINE|Alu	9492	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
190438	chr5	179841551	179842150	+	0	NA	intron (NM_016175, intron 5 of 6)	intron (NM_016175, intron 5 of 6)	16967	NM_016175	51149		NM_016175	ENSG00000161010	MRNIP	C5orf45	MRN complex interacting protein	protein-coding
200559	chr6	136275471	136275880	+	0	NA	exon (NM_001077440, exon 6 of 12)	exon (NM_001077440, exon 6 of 12)	14171	NM_014739	9774		NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding
114444	chr19	12700021	12700850	+	0	NA	non-coding (NR_167979, exon 25 of 25)	non-coding (NR_167979, exon 25 of 25)	3236	NR_132756	106633804		NR_132756		SNORD135	ZL2	small nucleolar RNA, C/D box 135	snoRNA
195572	chr6	37500921	37501280	+	0	NA	Intergenic	LTR12|LTR|ERV1	-1207	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
106482	chr18	14430921	14431750	+	0	NA	Intergenic	CpG	67371	NR_024076	440224		NR_024076	ENSG00000293262	CXADRP3	-	CXADR pseudogene 3	pseudo
82840	chr16	21505801	21506200	+	0	NA	TTS (NR_049833)	TTS (NR_049833)	135	NR_037451	100500917		NR_037451	ENSG00000265462	MIR3680-1	MIR3680|hsa-mir-3680-1	microRNA 3680-1	ncRNA
42359	chr11	68583971	68584330	+	0	NA	intron (NR_147970, intron 14 of 23)	intron (NR_147970, intron 14 of 23)	-100394	NM_015973	51083		NM_015973	ENSG00000069482	GAL	ETL8|GAL-GMAP|GALN|GLNN|GMAP	galanin and GMAP prepropeptide	protein-coding
43839	chr11	87037451	87038730	+	0	NA	non-coding (NR_033149, exon 1 of 14)	non-coding (NR_033149, exon 1 of 14)	156	NM_001168724	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
116746	chr19	18474721	18475560	+	0	NA	intron (NM_006532, intron 1 of 11)	AluSx1|SINE|Alu	-37007	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
46693	chr11	128768601	128768900	+	0	NA	intron (NM_001167681, intron 4 of 9)	intron (NM_001167681, intron 4 of 9)	-72727	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
25941	chr10	11368101	11368300	+	0	NA	Intergenic	Intergenic	-23526	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
21949	chr1	207923621	207923880	+	0	NA	Intergenic	Intergenic	-12625	NM_001773	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
217650	chr8	30077971	30078130	+	0	NA	intron (NM_016127, intron 1 of 5)	AluSg|SINE|Alu	5014	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
129489	chr2	69615701	69616100	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	27838	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
117156	chr19	19326271	19326430	+	0	NA	intron (NM_015329, intron 1 of 18)	AluJo|SINE|Alu	5521	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
125397	chr2	11482751	11483500	+	0	NA	Intergenic	CpG	-16948	NM_001278278	1876		NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
17034	chr1	156070571	156071030	+	0	NA	TTS (NM_020387)	TTS (NM_020387)	9640	NR_133653	57111		NM_020387	ENSG00000132698	RAB25	CATX-8|RAB11C	RAB25, member RAS oncogene family	protein-coding
17817	chr1	159856401	159856900	+	0	NA	intron (NM_001013661, intron 4 of 6)	intron (NM_001013661, intron 4 of 6)	-1613	NR_147125	284677		NM_001134233	ENSG00000188004	SNHG28	C1orf204|VSIG8-OT1	small nucleolar RNA host gene 28	ncRNA
181577	chr5	43285751	43286050	+	0	NA	Intergenic	AluSp|SINE|Alu	27281	NM_001330663	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
179595	chr4	185425201	185426470	+	0	NA	intron (NR_144317, intron 1 of 11)	CpG	129	NM_018359	55325		NM_018359	ENSG00000109775	UFSP2	BHD|C4orf20|DEE106|SEMDDR	UFM1 specific peptidase 2	protein-coding
160706	chr3	32398601	32399630	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	7262	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
195465	chr6	37033201	37033600	+	0	NA	Intergenic	Intergenic	27745	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
76930	chr15	78061621	78062800	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	15442	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
126464	chr2	28359001	28360350	+	0	NA	Intergenic	Intergenic	-33183	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
194063	chr6	31862001	31863600	+	0	NA	promoter-TSS (NM_000434).3	promoter-TSS (NM_000434).3	21	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
33084	chr10	110900971	110901400	+	0	NA	intron (NM_001195307, intron 2 of 2)	AluJo|SINE|Alu	3095	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
139879	chr2	230662901	230663400	+	0	NA	Intergenic	MIRc|SINE|MIR	37379	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
89671	chr16	89371421	89372080	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	51298	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
209877	chr7	91085151	91085450	+	0	NA	intron (NM_012395, intron 11 of 13)	MLT1E2|LTR|ERVL-MaLR	-179133	NM_003505	8321		NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
156332	chr22	40684571	40686000	+	0	NA	Intergenic	Intergenic	5801	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
93657	chr17	19193601	19194730	+	0	NA	Intergenic	L1MC2|LINE|L1	-3920	NR_006881	780853		NR_006881		SNORD3C	RNU3-3|U3-3	small nucleolar RNA, C/D box 3C	snoRNA
174806	chr4	48121971	48122330	+	0	NA	intron (NM_003328, intron 1 of 14)	L2a|LINE|L2	12100	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
5663	chr1	26313851	26314150	+	0	NA	intron (NM_145345, intron 1 of 14)	AluY|SINE|Alu	-3958	NM_001803	1043		NM_001803	ENSG00000169442	CD52	CDW52|EDDM5|HE5	CD52 molecule	protein-coding
218162	chr8	41933601	41933800	+	0	NA	exon (NM_006766, exon 17 of 17)	exon (NM_006766, exon 17 of 17)	-36959	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
215325	chr7	157353421	157354130	+	0	NA	intron (NM_001363676, intron 1 of 6)	AluJb|SINE|Alu	16771	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
94309	chr17	28748401	28749250	+	0	NA	intron (NM_004295, intron 6 of 6)	intron (NM_004295, intron 6 of 6)	4814	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
221365	chr8	123376671	123377030	+	0	NA	intron (NM_014109, intron 2 of 27)	AluSz|SINE|Alu	19597	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
127719	chr2	43426371	43427280	+	0	NA	intron (NR_144316, intron 28 of 36)	intron (NR_144316, intron 28 of 36)	169149	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
25778	chr10	11153101	11153300	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-11681	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
223812	chr8	144822901	144823100	+	0	NA	intron (NR_147501, intron 1 of 4)	intron (NR_147501, intron 1 of 4)	4040	NR_147501	100130027		NR_147501		LOC100130027	-	uncharacterized LOC100130027	ncRNA
62602	chr13	100394001	100394200	+	0	NA	intron (NM_001352611, intron 18 of 21)	intron (NM_001352611, intron 18 of 21)	86915	NR_047686	100885777		NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
98445	chr17	46940521	46941400	+	0	NA	3' UTR (NM_001363851, exon 6 of 6)	3' UTR (NM_001363851, exon 6 of 6)	17800	NM_001321133	9570		NM_004287	ENSG00000108433	GOSR2	Bos1|EPM6|GS27|MYOS	golgi SNAP receptor complex member 2	protein-coding
124766	chr2	7044301	7044700	+	0	NA	TTS (NM_001349186)	TTS (NM_001349186)	33380	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
192737	chr6	26377871	26378230	+	0	NA	3' UTR (NM_001197247, exon 11 of 11)	3' UTR (NM_001197247, exon 11 of 11)	-5058	NM_181531	10385		NM_006995	ENSG00000124508	BTN2A2	BT2.2|BTF2|BTN2.2	butyrophilin subfamily 2 member A2	protein-coding
234132	chrX	9941921	9942430	+	0	NA	intron (NM_001320664, intron 4 of 5)	intron (NM_001320664, intron 4 of 5)	-25183	NM_001195081	100288814		NM_001195081	ENSG00000234469	CLDN34	-	claudin 34	protein-coding
181320	chr5	40367221	40367580	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-312515	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
174587	chr4	40248871	40249130	+	0	NA	Intergenic	Intergenic	51969	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
231915	chr9	133101671	133101830	+	0	NA	exon (NM_001042368, exon 16 of 18)	exon (NM_001042368, exon 16 of 18)	19211	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
165947	chr3	107633601	107633880	+	0	NA	intron (NM_020235, intron 2 of 16)	L3|LINE|CR1	110778	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
194369	chr6	32974701	32975480	+	0	NA	5' UTR (NM_001291986, exon 4 of 14).3	5' UTR (NM_001291986, exon 4 of 14).3	2006	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
78662	chr15	94327421	94327730	+	0	NA	intron (NM_001385002, intron 5 of 23)	intron (NM_001385002, intron 5 of 23)	-28355	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
91567	chr17	5117451	5117550	+	0	NA	intron (NM_001304284, intron 1 of 37)	AluSg|SINE|Alu	-1052	NM_001320954	7775		NM_014519	ENSG00000167840	ZNF232	ZSCAN11	zinc finger protein 232	protein-coding
66765	chr14	64530971	64531130	+	0	NA	intron (NM_014950, intron 2 of 2)	intron (NM_014950, intron 2 of 2)	9318	NR_110550	102723809		NR_110550	ENSG00000259116	HSPA2-AS1	-	HSPA2 and ZBTB1 antisense RNA 1	ncRNA
28758	chr10	62022751	62023280	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-26342	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
105454	chr17	83022321	83022580	+	0	NA	intron (NR_135465, intron 4 of 13)	intron (NR_135465, intron 4 of 13)	-15453	NM_001320743	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
155250	chr22	37955151	37955530	+	0	NA	intron (NM_001301130, intron 1 of 5)	AluSx|SINE|Alu	1641	NM_021974	5435		NM_021974	ENSG00000100142	POLR2F	HRBP14.4|POLRF|RPABC14.4|RPABC2|RPB14.4|RPB6|RPC15	RNA polymerase II, I and III subunit F	protein-coding
197316	chr6	72994101	72994450	+	0	NA	intron (NM_001160133, intron 1 of 14)	L1HS|LINE|L1	-26522	NR_036244	100423005		NR_036244	ENSG00000266180	MIR4282	-	microRNA 4282	ncRNA
145251	chr20	38997471	38998030	+	0	NA	intron (NM_001190809, intron 7 of 20)	intron (NM_001190809, intron 7 of 20)	35406	NR_033905	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
45268	chr11	118005751	118006250	+	0	NA	Intergenic	Intergenic	19606	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
187824	chr5	146795871	146796230	+	0	NA	intron (NM_001271899, intron 2 of 9)	intron (NM_001271899, intron 2 of 9)	82707	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
14023	chr1	120731271	120732230	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	7811	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
172912	chr4	3496171	3496530	+	0	NA	intron (NM_001301071, intron 7 of 9)	intron (NM_001301071, intron 7 of 9)	11806	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
190867	chr6	2127571	2128300	+	0	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	48056	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
151777	chr22	18079351	18079450	+	0	NA	intron (NM_001199319, intron 2 of 4)	intron (NM_001199319, intron 2 of 4)	1410	NM_001127649	55670		NM_017929	ENSG00000215193	PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
89520	chr16	89174571	89174930	+	0	NA	intron (NM_004933, intron 1 of 13)	intron (NM_004933, intron 1 of 13)	3002	NM_004933	1013		NM_004933	ENSG00000129910	CDH15	CDH14|CDH3|CDHM|MCAD|MRD3	cadherin 15	protein-coding
142574	chr20	5486671	5487030	+	0	NA	Intergenic	L2b|LINE|L2	15654	NR_029405	643406		NM_175877		LOC643406	-	uncharacterized LOC643406	ncRNA
193553	chr6	30616801	30618700	+	0	NA	promoter-TSS (NR_072994).7	promoter-TSS (NR_072994).7	-90	NM_014046	28973		NM_014046	ENSG00000204568	MRPS18B	C6orf14|HSPC183|HumanS18a|MRP-S18-2|MRPS18-2|PTD017|S18amt|mS40	mitochondrial ribosomal protein S18B	protein-coding
161165	chr3	39101951	39102050	+	0	NA	intron (NM_001278789, intron 1 of 6)	intron (NM_001278789, intron 1 of 6)	5627	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
66790	chr14	64705451	64706330	+	0	NA	intron (NM_001308147, intron 1 of 16)	intron (NM_001308147, intron 1 of 16)	1466	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
124798	chr2	7467871	7468680	+	0	NA	Intergenic	Intergenic	47014	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
232854	chr9	136790371	136792700	+	0	NA	intron (NM_032928, intron 1 of 4)	intron (NM_032928, intron 1 of 4)	191	NM_032928	85014		NM_032928	ENSG00000244187	TMEM141	-	transmembrane protein 141	protein-coding
60133	chr13	39263071	39263230	+	0	NA	Intergenic	LTR79|LTR|ERVL	224694	NM_001012754	387921		NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding
18411	chr1	161442851	161442950	+	0	NA	Intergenic	CpG	-62557	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
214429	chr7	149863621	149864680	+	0	NA	exon (NM_001099220, exon 8 of 8)	exon (NM_001099220, exon 8 of 8)	-8814	NM_001367792	155066		NM_145230	ENSG00000171130	ATP6V0E2	ATP6V0E2L|C7orf32	ATPase H+ transporting V0 subunit e2	protein-coding
172283	chr4	1551351	1551650	+	0	NA	Intergenic	Intergenic	132491	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
238985	chrX	155651271	155651430	+	0	NA	intron (NM_001304990, intron 1 of 2)	AluSz6|SINE|Alu	-38398	NM_018196	55217		NM_018196	ENSG00000185973	TMLHE	AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130	trimethyllysine hydroxylase, epsilon	protein-coding
31397	chr10	95246521	95247000	+	0	NA	intron (NM_020992, intron 5 of 6)	intron (NM_020992, intron 5 of 6)	44243	NM_020992	9124		NM_020992	ENSG00000107438	PDLIM1	CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1	PDZ and LIM domain 1	protein-coding
50407	chr12	47358301	47358900	+	0	NA	Intergenic	AluYm1|SINE|Alu	5669	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
202555	chr6	158657871	158658230	+	0	NA	intron (NM_001242395, intron 2 of 15)	AluY|SINE|Alu	-5353	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
61849	chr13	76972251	76972750	+	0	NA	Intergenic	Intergenic	-19581	NM_001366624	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
65841	chr14	54906901	54907100	+	0	NA	Intergenic	HAL1b|LINE|L1	-4174	NM_001024071	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
22167	chr1	212244221	212244480	+	0	NA	intron (NR_125984, intron 1 of 3)	intron (NR_125984, intron 1 of 3)	-9614	NR_125982	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
79048	chr16	84771	85700	+	0	NA	TTS (NM_001077350)	TTS (NM_001077350)	7010	NM_001015052	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
103103	chr17	77347551	77347850	+	0	NA	intron (NM_006640, intron 1 of 10)	MER47A|DNA|TcMar-Tigger	-25637	NM_001113493	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
128265	chr2	54578001	54578580	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	19896	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
189914	chr5	177366671	177366830	+	0	NA	exon (NM_001366618, exon 4 of 14)	exon (NM_001366618, exon 4 of 14)	8826	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
10892	chr1	78652351	78652450	+	0	NA	intron (NR_135641, intron 2 of 7)	LTR80A|LTR|ERVL	2569	NM_006417	10561		NM_006417	ENSG00000137965	IFI44	MTAP44|TLDC5|p44	interferon induced protein 44	protein-coding
1425	chr1	2583271	2583430	+	0	NA	intron (NR_121638, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	-3173	NR_036637	127281		NM_152371	ENSG00000157870	PRXL2B	C1orf93|FAM213B	peroxiredoxin like 2B	protein-coding
108828	chr18	79043271	79043800	+	0	NA	Intergenic	L1MB7|LINE|L1	-25859	NM_001306085	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
10923	chr1	84103401	84103650	+	0	NA	intron (NM_207578, intron 1 of 8)	intron (NM_207578, intron 1 of 8)	25446	NM_001375576	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
153542	chr22	26585121	26585800	+	0	NA	intron (NM_001362923, intron 1 of 7)	intron (NM_001362923, intron 1 of 7)	4672	NM_003595	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
81734	chr16	11328571	11329250	+	0	NA	Intergenic	Intergenic	16302	NR_135174	105371083		NR_135174	ENSG00000263080	LOC105371083	-	uncharacterized LOC105371083	ncRNA
119276	chr19	39543121	39543580	+	0	NA	Intergenic	AluJr|SINE|Alu	-3189	NM_153232	163126		NM_153232	ENSG00000176396	EID2	CRI2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
68516	chr14	88600021	88600480	+	0	NA	intron (NM_207661, intron 10 of 14)	intron (NM_207661, intron 10 of 14)	5830	NM_207662	79882		NM_024824	ENSG00000100722	ZC3H14	MRT56|MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
29340	chr10	69425451	69426230	+	0	NA	Intergenic	Intergenic	-8922	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
175622	chr4	76147721	76148930	+	0	NA	promoter-TSS (NM_017426)	promoter-TSS (NM_017426)	72	NM_017426	53371		NM_017426	ENSG00000138750	NUP54	DYT37	nucleoporin 54	protein-coding
9726	chr1	53180871	53181230	+	0	NA	Intergenic	Intergenic	-15774	NM_001330589	1376		NM_000098	ENSG00000157184	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
158679	chr3	5184321	5184880	+	0	NA	Intergenic	FAM|SINE|Alu	-3107	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
65148	chr14	45133601	45135100	+	0	NA	exon (NM_002013, exon 1 of 7)	exon (NM_002013, exon 1 of 7)	131	NM_002013	2287		NM_002013	ENSG00000100442	FKBP3	FKBP-25|FKBP-3|FKBP25|PPIase	FKBP prolyl isomerase 3	protein-coding
81472	chr16	8908821	8909380	+	0	NA	intron (NR_135826, intron 11 of 30)	intron (NR_135826, intron 11 of 30)	27539	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
24080	chr1	235323671	235324030	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-3366	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
113560	chr19	10249701	10250450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1889	NM_146387	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
203061	chr6	166252401	166252600	+	0	NA	intron (NR_125862, intron 2 of 4)	intron (NR_125862, intron 2 of 4)	15531	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
202632	chr6	158752571	158752930	+	0	NA	intron (NM_001318745, intron 10 of 14)	intron (NM_001318745, intron 10 of 14)	12003	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
228631	chr9	105858401	105858600	+	0	NA	Intergenic	Intergenic	163959	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
207755	chr7	49685701	49686100	+	0	NA	Intergenic	L1HS|LINE|L1	-87738	NM_198570	375567		NM_198570	ENSG00000188730	VWC2	PSST739|UNQ739	von Willebrand factor C domain containing 2	protein-coding
35898	chr11	2409751	2410200	+	0	NA	intron (NM_014555, intron 18 of 23)	intron (NM_014555, intron 18 of 23)	9225	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
229095	chr9	114377101	114377480	+	0	NA	exon (NM_001317950, exon 3 of 22)	exon (NM_001317950, exon 3 of 22)	10692	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
206145	chr7	27805801	27806200	+	0	NA	intron (NM_001362795, intron 13 of 14)	intron (NM_001362795, intron 13 of 14)	65905	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
74512	chr15	60390671	60391350	+	0	NA	intron (NM_001136015, intron 1 of 13)	intron (NM_001136015, intron 1 of 13)	6976	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
139846	chr2	230457151	230457630	+	0	NA	intron (NM_001080391, intron 8 of 28)	L1MA8|LINE|L1	40634	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
22369	chr1	217634021	217634480	+	0	NA	intron (NM_001375655, intron 1 of 10)	LTR8|LTR|ERV1	2906	NM_001375655	128153		NM_138796	ENSG00000162814	SPATA17	CFAP305|FAP305|IQCH|MOT17|MSRG-11|MSRG11	spermatogenesis associated 17	protein-coding
113689	chr19	10406251	10406350	+	0	NA	Intergenic	Intergenic	-2758	NM_007065	11140		NM_007065	ENSG00000105401	CDC37	P50CDC37	cell division cycle 37, HSP90 cochaperone	protein-coding
220883	chr8	103501251	103502050	+	0	NA	promoter-TSS (NR_145703)	promoter-TSS (NR_145703)	38	NR_145700	105375690		NR_145697		LOC105375690	-	uncharacterized LOC105375690	ncRNA
74388	chr15	58908321	58909650	+	0	NA	intron (NR_135043, intron 4 of 18)	intron (NR_135043, intron 4 of 18)	24694	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
218934	chr8	60911771	60912830	+	0	NA	Intergenic	Intergenic	-1502	NR_168430	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
219224	chr8	66773051	66773350	+	0	NA	intron (NM_001033578, intron 1 of 16)	intron (NM_001033578, intron 1 of 16)	-1981	NM_013257	23678		NM_013257	ENSG00000104205	SGK3	CISK|SGK2|SGKL	serum/glucocorticoid regulated kinase family member 3	protein-coding
96200	chr17	39757301	39757500	+	0	NA	TTS (NM_001257414)	TTS (NM_001257414)	17433	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
36970	chr11	11787721	11788150	+	0	NA	Intergenic	Intergenic	-4713	NR_107037	102465870		NR_107037	ENSG00000278529	MIR8070	hsa-mir-8070	microRNA 8070	ncRNA
164636	chr3	66469301	66469500	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	30654	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
147673	chr20	62301371	62302200	+	0	NA	Intergenic	AluSz|SINE|Alu	-1111	NM_001281437	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
224314	chr9	6683201	6683850	+	0	NA	Intergenic	MER39|LTR|ERV1	-37338	NM_001146696	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
172666	chr4	2723851	2724150	+	0	NA	intron (NM_001256668, intron 19 of 19)	MER57A-int|LTR|ERV1	32336	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
126008	chr2	25317271	25317430	+	0	NA	intron (NR_135490, intron 1 of 23)	AluJr|SINE|Alu	11371	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
1477	chr1	2696551	2696850	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-63684	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
53947	chr12	71842501	71843500	+	0	NA	intron (NR_027449, intron 1 of 15)	intron (NR_027449, intron 1 of 15)	3241	NM_022771	64786		NM_022771	ENSG00000121749	TBC1D15	RAB7-GAP	TBC1 domain family member 15	protein-coding
35191	chr11	795421	796700	+	0	NA	5' UTR (NM_024698, exon 1 of 10)	5' UTR (NM_024698, exon 1 of 10)	178	NM_024698	79751		NM_024698	ENSG00000177542	SLC25A22	DEE3|EIEE3|GC-1|GC1|NET44	solute carrier family 25 member 22	protein-coding
31199	chr10	91224051	91224150	+	0	NA	intron (NM_032373, intron 2 of 9)	L1MB4|LINE|L1	3437	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
518	chr1	1212251	1214400	+	0	NA	intron (NM_003327, intron 2 of 6)	intron (NM_003327, intron 2 of 6)	828	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
28278	chr10	46021901	46022180	+	0	NA	intron (NM_001145263, intron 1 of 9)	intron (NM_001145263, intron 1 of 9)	1418	NM_005437	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
47685	chr12	6364951	6365050	+	0	NA	intron (NM_001159575, intron 2 of 12)	L1M5|LINE|L1	-10160	NM_001270987	4055		NM_002342	ENSG00000111321	LTBR	D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	lymphotoxin beta receptor	protein-coding
209908	chr7	92136001	92136200	+	0	NA	intron (NR_122110, intron 1 of 2)	intron (NR_122110, intron 1 of 2)	-1355	NM_001146152	1595		NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
20980	chr1	202626971	202627530	+	0	NA	intron (NM_177402, intron 1 of 8)	intron (NM_177402, intron 1 of 8)	16203	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
141745	chr2	241886171	241886530	+	0	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	4987	NR_110220	101927289		NR_110220	ENSG00000233806	LINC01237	-	long intergenic non-protein coding RNA 1237	ncRNA
230473	chr9	128215651	128215980	+	0	NA	intron (NM_001374269, intron 1 of 21)	intron (NM_001374269, intron 1 of 21)	-11593	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
119027	chr19	38926001	38926200	+	0	NA	intron (NM_001145901, intron 2 of 16).2	AluSx1|SINE|Alu	4663	NM_017827	54938		NM_017827	ENSG00000104835	SARS2	SARS|SARSM|SERS|SYS|SerRS|SerRSmt|mtSerRS	seryl-tRNA synthetase 2, mitochondrial	protein-coding
52988	chr12	57494751	57494850	+	0	NA	intron (NM_004990, intron 7 of 20)	SVA_B|Retroposon|SVA	-5976	NM_001319850	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
210421	chr7	100079771	100079930	+	0	NA	intron (NM_001371211, intron 1 of 5)	AluJr|SINE|Alu	1873	NM_001371216	7551		NM_017715	ENSG00000166526	ZNF3	A8-51|HF.12|KOX25|PP838|Zfp113	zinc finger protein 3	protein-coding
116779	chr19	18508451	18508930	+	0	NA	intron (NM_006532, intron 1 of 11)	MER58A|DNA|hAT-Charlie	13380	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
197537	chr6	78910601	78910930	+	0	NA	Intergenic	CpG	43214	NM_001010844	134728		NM_001010844	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin 1 receptor associated kinase 1 binding protein 1	protein-coding
153797	chr22	29623151	29624050	+	0	NA	intron (NM_181830, intron 1 of 14)	intron (NM_181830, intron 1 of 14)	19967	NM_181829	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
166433	chr3	113832551	113832850	+	0	NA	Intergenic	L1M4|LINE|L1	-6088	NM_017577	54762		NM_017577	ENSG00000178075	GRAMD1C	-	GRAM domain containing 1C	protein-coding
137458	chr2	197011851	197012580	+	0	NA	intron (NR_160034, intron 19 of 28)	intron (NR_160034, intron 19 of 28)	-85508	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
113717	chr19	10453901	10454700	+	0	NA	intron (NM_006202, intron 1 of 9)	intron (NM_006202, intron 1 of 9)	1368	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
18150	chr1	160757851	160758180	+	0	NA	Intergenic	Intergenic	18768	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
178107	chr4	140755871	140756930	+	0	NA	promoter-TSS (NM_015130)	promoter-TSS (NM_015130)	-15	NM_015130	23158		NM_015130	ENSG00000109436	TBC1D9	GRAMD9|MDR1	TBC1 domain family member 9	protein-coding
143467	chr20	31053701	31054130	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-203749	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
209658	chr7	77944421	77944680	+	0	NA	intron (NM_001366081, intron 14 of 16)	L1ME3Cz|LINE|L1	104420	NM_001127359	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
19102	chr1	171488921	171489500	+	0	NA	intron (NM_015172, intron 1 of 33)	intron (NM_015172, intron 1 of 33)	3680	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
40621	chr11	64692121	64692400	+	0	NA	intron (NM_015080, intron 4 of 22)	intron (NM_015080, intron 4 of 22)	30937	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
147774	chr20	62549101	62549530	+	0	NA	intron (NR_033263, intron 1 of 6)	intron (NR_033263, intron 1 of 6)	-1138	NM_178463	128826		NM_178463	ENSG00000174407	MIR1-1HG	C20orf166|MIR133A2HG	MIR1-1 host gene	ncRNA
106995	chr18	32037751	32038630	+	0	NA	intron (NM_017831, intron 2 of 5)	AluSz6|SINE|Alu	19365	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
120515	chr19	44843701	44843900	+	0	NA	Intergenic	AluSz|SINE|Alu	-2497	NM_001042724	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
58637	chr12	132508101	132508700	+	0	NA	intron (NM_001382740, intron 2 of 11)	CpG	2994	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
64666	chr14	31926101	31926500	+	0	NA	Intergenic	MIRb|SINE|MIR	-18553	NR_146544	105370439		NR_146544	ENSG00000258474	LINC02313	-	long intergenic non-protein coding RNA 2313	ncRNA
215541	chr7	158785621	158786080	+	0	NA	intron (NM_020728, intron 6 of 21)	intron (NM_020728, intron 6 of 21)	43659	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
105040	chr17	82060471	82060980	+	0	NA	exon (NM_022156, exon 10 of 14)	exon (NM_022156, exon 10 of 14)	5079	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
52239	chr12	54402021	54402280	+	0	NA	intron (NM_002205, intron 20 of 29)	intron (NM_002205, intron 20 of 29)	-10852	NM_001130967	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
63816	chr14	21448921	21449800	+	0	NA	intron (NM_001170629, intron 1 of 37)	MIRb|SINE|MIR	6763	NM_001170629	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
190361	chr5	179730901	179731100	+	0	NA	non-coding (NR_157048, exon 15 of 15)	non-coding (NR_157048, exon 15 of 15)	-1822	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
31027	chr10	88833371	88834230	+	0	NA	intron (NM_144590, intron 1 of 5)	intron (NM_144590, intron 1 of 5)	18044	NM_144590	118932		NM_144590	ENSG00000152766	ANKRD22	-	ankyrin repeat domain 22	protein-coding
158646	chr3	4999771	5000130	+	0	NA	Intergenic	Intergenic	-19989	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
119249	chr19	39493301	39493700	+	0	NA	3' UTR (NM_001001563, exon 11 of 11)	3' UTR (NM_001001563, exon 11 of 11)	-5447	NM_016941	10683		NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding
209371	chr7	76297901	76298300	+	0	NA	Intergenic	AluY|SINE|Alu	-4573	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
40570	chr11	64353221	64353730	+	0	NA	exon (NM_032251, exon 22 of 27)	exon (NM_032251, exon 22 of 27)	-5687	NM_001300802	8986		NM_003942	ENSG00000162302	RPS6KA4	MSK2|RSK-B|S6K-alpha-4	ribosomal protein S6 kinase A4	protein-coding
48768	chr12	11553851	11554250	+	0	NA	non-coding (NR_033890, exon 5 of 8)	non-coding (NR_033890, exon 5 of 8)	6020	NR_033890	338817		NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
171131	chr3	195540471	195541350	+	0	NA	intron (NM_006241, intron 1 of 5)	intron (NM_006241, intron 1 of 5)	2415	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
61413	chr13	51801651	51802680	+	0	NA	intron (NR_165333, intron 1 of 9)	intron (NR_165333, intron 1 of 9)	1570	NM_001377932	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
23916	chr1	235015451	235016250	+	0	NA	Intergenic	HAL1M8|LINE|L1	-51851	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
152824	chr22	21883601	21883800	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-16020	NM_138957	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
228709	chr9	109017001	109017400	+	0	NA	3' UTR (NM_032012, exon 18 of 18)	3' UTR (NM_032012, exon 18 of 18)	-3701	NM_003798	8727		NM_003798	ENSG00000119326	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin alpha like 1	protein-coding
94107	chr17	27845671	27846950	+	0	NA	Intergenic	LTR12|LTR|ERV1	-45781	NM_000625	4843		NM_000625	ENSG00000007171	NOS2	HEP-NOS|INOS|NOS|NOS2A	nitric oxide synthase 2	protein-coding
48539	chr12	10215901	10216650	+	0	NA	intron (NM_031412, intron 1 of 3)	AluSz|SINE|Alu	3398	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
37553	chr11	18708151	18708450	+	0	NA	intron (NM_173588, intron 18 of 22)	intron (NM_173588, intron 18 of 22)	9521	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
60880	chr13	46123021	46123500	+	0	NA	Intergenic	Intergenic	-18184	NM_001278541	1361		NM_001872	ENSG00000080618	CPB2	CPU|PCPB|TAFI	carboxypeptidase B2	protein-coding
124284	chr19	57822371	57822530	+	0	NA	Intergenic	AluSp|SINE|Alu	5012	NR_024162	2282		NR_024162		FKBP1AP1	FKBP12|FKBP1P1	FKBP prolyl isomerase 1A pseudogene 1	pseudo
122519	chr19	49616421	49616680	+	0	NA	intron (NM_020719, intron 9 of 13)	intron (NM_020719, intron 9 of 13)	23593	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
25258	chr10	6070701	6071130	+	0	NA	Intergenic	MIRb|SINE|MIR	-8548	NM_001308243	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
236641	chrX	74924671	74925500	+	0	NA	5' UTR (NM_001008537, exon 1 of 4)	5' UTR (NM_001008537, exon 1 of 4)	367	NM_001008537	340533		NM_001008537	ENSG00000050030	NEXMIF	KIAA2022|KIDLIA|MRX98|XLID98|XPN	neurite extension and migration factor	protein-coding
15170	chr1	149060471	149060830	+	0	NA	exon (NM_001037675, exon 19 of 21)	exon (NM_001037675, exon 19 of 21)	21661	NM_001277444	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
183597	chr5	80196021	80196400	+	0	NA	intron (NM_001174072, intron 2 of 11)	intron (NM_001174072, intron 2 of 11)	59838	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
169818	chr3	177119971	177120230	+	0	NA	intron (NM_001374330, intron 1 of 14)	intron (NM_001374330, intron 1 of 14)	76378	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
9247	chr1	46180671	46180830	+	0	NA	intron (NM_005727, intron 2 of 8)	intron (NM_005727, intron 2 of 8)	-4262	NM_001303427	110117499		NM_001303427	ENSG00000278139	P3R3URF-PIK3R3	LOC110117498-PIK3R3	P3R3URF-PIK3R3 readthrough	protein-coding
235220	chrX	41368321	41369230	+	0	NA	Intergenic	AluSx|SINE|Alu	34609	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
16991	chr1	155982621	155982880	+	0	NA	Intergenic	Intergenic	-3190	NM_001350112	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
234964	chrX	39196171	39196900	+	0	NA	Intergenic	LTR81B|LTR|Gypsy	130827	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
224087	chr9	4344851	4345240	+	0	NA	Intergenic	L2a|LINE|L2	-44977	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
148991	chr21	14241201	14241590	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	25238	NM_144770	54033		NM_144770	ENSG00000185272	RBM11	-	RNA binding motif protein 11	protein-coding
191206	chr6	5516901	5517100	+	0	NA	intron (NM_001374875, intron 4 of 6)	intron (NM_001374875, intron 4 of 6)	-58925	NR_125848	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
59573	chr13	27431921	27433300	+	0	NA	intron (NM_002097, intron 4 of 8)	intron (NM_002097, intron 4 of 8)	7991	NM_002097	2971		NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding
221607	chr8	125530701	125531250	+	0	NA	Intergenic	MIRc|SINE|MIR	98766	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
175400	chr4	70838771	70839300	+	0	NA	intron (NM_002092, intron 1 of 9)	CpG	226	NM_001098477	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
238492	chrX	153560201	153560400	+	0	NA	intron (NM_001001344, intron 16 of 19)	intron (NM_001001344, intron 16 of 19)	24178	NM_021949	492		NM_021949	ENSG00000067842	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase plasma membrane Ca2+ transporting 3	protein-coding
183411	chr5	78162351	78162530	+	0	NA	intron (NM_003664, intron 13 of 26)	intron (NM_003664, intron 13 of 26)	132258	NM_003664	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
93912	chr17	21282551	21283000	+	0	NA	Intergenic	L2b|LINE|L2	-1936	NM_145109	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
56294	chr12	112388551	112388850	+	0	NA	Intergenic	MIR|SINE|MIR	-6269	NM_001109662	283450		NM_173813	ENSG00000173064	HECTD4	C12ord51|C12orf51|HEEL|NEDSSCC|POTAGE	HECT domain E3 ubiquitin protein ligase 4	protein-coding
71852	chr15	22251351	22251850	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7014	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
111980	chr19	4872151	4873080	+	0	NA	Intergenic	AluY|SINE|Alu	-4948	NM_001164189	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
42157	chr11	67790071	67790630	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	14986	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
14393	chr1	144220701	144221200	+	0	NA	Intergenic	Intergenic	27255	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
164114	chr3	56684271	56684430	+	0	NA	Intergenic	MIR|SINE|MIR	-1085	NM_001112736	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
143838	chr20	32515551	32515650	+	0	NA	intron (NM_001256798, intron 3 of 10)	intron (NM_001256798, intron 3 of 10)	5641	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
124330	chr19	58192751	58193050	+	0	NA	intron (NM_133502, intron 4 of 7)	AluJr|SINE|Alu	9839	NM_133502	10782		NM_016324	ENSG00000171606	ZNF274	HFB101|ZF2|ZKSCAN19|ZSCAN51	zinc finger protein 274	protein-coding
221957	chr8	129956521	129957180	+	0	NA	intron (NM_001353279, intron 2 of 13)	AluJo|SINE|Alu	-17039	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
125891	chr2	24729751	24730050	+	0	NA	intron (NM_147233, intron 15 of 20)	AluSc|SINE|Alu	-63215	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
172698	chr4	2767151	2767650	+	0	NA	Intergenic	Intergenic	-11064	NM_024309	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
16782	chr1	155515651	155516280	+	0	NA	intron (NM_018489, intron 2 of 27)	intron (NM_018489, intron 2 of 27)	-46077	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
218078	chr8	38932321	38932900	+	0	NA	intron (NM_021623, intron 2 of 11)	intron (NM_021623, intron 2 of 11)	31264	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
89869	chr16	89638321	89639600	+	0	NA	TTS (NM_001128141)	TTS (NM_001128141)	18363	NM_004413	1800		NM_004413	ENSG00000015413	DPEP1	MBD1|MDP|RDP	dipeptidase 1	protein-coding
167928	chr3	136180771	136181630	+	0	NA	intron (NM_018133, intron 1 of 1)	Charlie21a|DNA|hAT-Charlie	13268	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
104262	chr17	80764571	80765010	+	0	NA	intron (NM_020761, intron 6 of 33)	L1PA3|LINE|L1	40842	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
114050	chr19	10977071	10977380	+	0	NA	intron (NM_001374457, intron 1 of 33)	intron (NM_001374457, intron 1 of 33)	-6899	NM_001128845	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
204551	chr7	5047421	5047680	+	0	NA	intron (NM_001204456, intron 2 of 5)	intron (NM_001204456, intron 2 of 5)	1690	NM_001204456	57786		NM_021163	ENSG00000146587	RBAK	ZNF769	RB associated KRAB zinc finger	protein-coding
158990	chr3	10292721	10293050	+	0	NA	promoter-TSS (NR_126505)	promoter-TSS (NR_126505)	62	NR_126505	51738		NM_016362	ENSG00000157017	GHRL	MTLRP	ghrelin and obestatin prepropeptide	protein-coding
118910	chr19	38722701	38722900	+	0	NA	intron (NM_004924, intron 12 of 20)	intron (NM_004924, intron 12 of 20)	21674	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
5651	chr1	26284481	26285830	+	0	NA	intron (NM_145345, intron 10 of 14)	intron (NM_145345, intron 10 of 14)	5069	NM_031286	83442		NM_031286	ENSG00000142669	SH3BGRL3	HEL-S-297|SH3BP-1|TIP-B1	SH3 domain binding glutamate rich protein like 3	protein-coding
34672	chr10	133353001	133353480	+	0	NA	TTS (NM_001145201)	TTS (NM_001145201)	4779	NM_001301827	282969		NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
216125	chr8	11412871	11413030	+	0	NA	intron (NR_026814, intron 3 of 6)	intron (NR_026814, intron 3 of 6)	44548	NR_026814	83656		NM_054017	ENSG00000184608	FAM167A-AS1	C8orf12	FAM167A antisense RNA 1	ncRNA
187079	chr5	140177471	140177780	+	0	NA	intron (NM_032412, intron 1 of 2)	intron (NM_032412, intron 1 of 2)	2437	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
139942	chr2	230823271	230823800	+	0	NA	Intergenic	Intergenic	-40650	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
162104	chr3	46906551	46907250	+	0	NA	Intergenic	Intergenic	24651	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
220216	chr8	96231301	96231840	+	0	NA	intron (NM_001254752, intron 3 of 4)	MIR3|SINE|MIR	3975	NM_001199975	7381		NM_006294	ENSG00000156467	UQCRB	MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding
140047	chr2	231360871	231361230	+	0	NA	intron (NM_001352754, intron 23 of 24)	intron (NM_001352754, intron 23 of 24)	-1658	NR_039937	100616317		NR_039937	ENSG00000263641	MIR4777	-	microRNA 4777	ncRNA
142225	chr20	3085251	3085350	+	0	NA	promoter-TSS (NM_000490)	promoter-TSS (NM_000490)	-576	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
79583	chr16	1002451	1003300	+	0	NA	Intergenic	Intergenic	21105	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
80474	chr16	2701071	2701430	+	0	NA	intron (NM_018992, intron 4 of 5)	intron (NM_018992, intron 4 of 5)	18727	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
10429	chr1	66012401	66012600	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	19884	NM_001037340	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
190617	chr5	181185671	181185830	+	0	NA	Intergenic	Intergenic	6158	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
108751	chr18	77114271	77116350	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	17473	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
234250	chrX	13094701	13095100	+	0	NA	Intergenic	Intergenic	-50280	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
23846	chr1	234700101	234700500	+	0	NA	Intergenic	Intergenic	-23742	NR_038856	100506810		NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
122752	chr19	50106751	50107350	+	0	NA	promoter-TSS (NR_024214).6	promoter-TSS (NR_024214).6	84	NR_024229	100170216		NR_024229		SNAR-A10	-	small NF90 (ILF3) associated RNA A10	snRNA
127635	chr2	43135101	43135400	+	0	NA	Intergenic	L2a|LINE|L2	-32805	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
138278	chr2	203689501	203690430	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-16510	NM_001243078	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
226947	chr9	79662401	79663200	+	0	NA	intron (NM_001351547, intron 7 of 18)	intron (NM_001351547, intron 7 of 18)	89623	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
209244	chr7	75875921	75876250	+	0	NA	Intergenic	Intergenic	-2907	NM_001346189	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
233730	chrX	1365321	1366500	+	0	NA	intron (NM_001267713, intron 7 of 9).2	CpG	26203	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
89209	chr16	88615921	88616450	+	0	NA	intron (NM_144604, intron 8 of 17)	intron (NM_144604, intron 8 of 17)	-22387	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
212678	chr7	129617221	129617680	+	0	NA	intron (NM_005011, intron 1 of 10)	intron (NM_005011, intron 1 of 10)	5730	NM_001293164	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
170310	chr3	184342621	184342880	+	0	NA	exon (NM_001171093, exon 5 of 6)	exon (NM_001171093, exon 5 of 6)	3917	NM_001366133	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
41936	chr11	67301321	67301800	+	0	NA	exon (NM_001347901, exon 14 of 16)	exon (NM_001347901, exon 14 of 16)	-1970	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
155132	chr22	37642721	37643800	+	0	NA	intron (NM_018957, intron 6 of 17)	intron (NM_018957, intron 6 of 17)	3591	NM_001350055	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
178098	chr4	140497801	140498400	+	0	NA	intron (NM_001277353, intron 1 of 10)	CpG	193	NM_001277353	152586		NM_001034840	ENSG00000205301	MGAT4D	GnT1IP	MGAT4 family member D	protein-coding
59322	chr13	24308801	24309400	+	0	NA	promoter-TSS (NM_001303137)	promoter-TSS (NM_001303137)	-480	NM_001303137	338872		NM_178540	ENSG00000240654	C1QTNF9	AQL1|C1QTNF9A|CTRP9	C1q and TNF related 9	protein-coding
129738	chr2	70960221	70961650	+	0	NA	exon (NM_001692, exon 7 of 14)	exon (NM_001692, exon 7 of 14)	-12324	NR_110273	101927750		NR_110273	ENSG00000239322	ATP6V1B1-AS1	-	ATP6V1B1 antisense RNA 1	ncRNA
124509	chr2	11301	11830	+	0	NA	Intergenic	TAR1|Satellite|telo	34940	NM_001077710	642273		NM_001077710	ENSG00000184731	FAM110C	-	family with sequence similarity 110 member C	protein-coding
177731	chr4	122330301	122330500	+	0	NA	intron (NM_001384125, intron 68 of 87)	L1MB1|LINE|L1	-48611	NM_139243	132612		NM_139243	ENSG00000164113	ADAD1	Tenr	adenosine deaminase domain containing 1	protein-coding
200441	chr6	135044901	135045100	+	0	NA	intron (NM_006620, intron 2 of 17)	intron (NM_006620, intron 2 of 17)	9822	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
36603	chr11	6739501	6740050	+	0	NA	Intergenic	Intergenic	-17896	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
152046	chr22	19579021	19579280	+	0	NA	Intergenic	Intergenic	-12311	NR_024381	150185		NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA
44569	chr11	108229451	108230280	+	0	NA	TTS (NM_001351836)	TTS (NM_001351836)	6336	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
182177	chr5	56695751	56696050	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	76971	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
239049	chrY	7273401	7275030	+	0	NA	non-coding (NR_028062, exon 1 of 8)	non-coding (NR_028062, exon 1 of 8)	243	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
109047	chr18	79788251	79788750	+	0	NA	Intergenic	CpG	-75168	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
231901	chr9	133084951	133085250	+	0	NA	intron (NR_001275, intron 3 of 4)	intron (NR_001275, intron 3 of 4)	2561	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
126197	chr2	26778151	26778650	+	0	NA	exon (NM_017877, exon 6 of 6)	exon (NM_017877, exon 6 of 6)	-7615	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
160680	chr3	32246121	32246380	+	0	NA	intron (NM_001320308, intron 1 of 2)	LTR33|LTR|ERVL	7570	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
196290	chr6	42996371	42996530	+	0	NA	intron (NM_180976, intron 2 of 15)	AluY|SINE|Alu	11880	NM_001270476	5528		NM_006245	ENSG00000112640	PPP2R5D	B56D|B56delta|HJS1|MRD35	protein phosphatase 2 regulatory subunit B'delta	protein-coding
141402	chr2	240850971	240851600	+	0	NA	Intergenic	Intergenic	-17539	NM_000030	189		NM_000030	ENSG00000172482	AGXT	AGT|AGT1|AGXT1|PH1|SPAT|SPT|Ser-PyrAT|TLH6	alanine--glyoxylate aminotransferase	protein-coding
205521	chr7	18357801	18358000	+	0	NA	intron (NM_001321896, intron 1 of 12)	L2b|LINE|L2	67808	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
190789	chr6	691801	693830	+	0	NA	intron (NR_073064, intron 1 of 29)	CpG	324	NM_018303	55770		NM_018303	ENSG00000112685	EXOC2	NEDFACH|SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding
115020	chr19	14083271	14083930	+	0	NA	exon (NM_001277378, exon 3 of 6)	exon (NM_001277378, exon 3 of 6)	2183	NM_001277378	646457		NM_001277378	ENSG00000188032	C19orf67	-	chromosome 19 open reading frame 67	protein-coding
15710	chr1	151010751	151010850	+	0	NA	intron (NR_130130, intron 1 of 3)	AluSz|SINE|Alu	2351	NR_130135	58497		NM_021222	ENSG00000143363	PRUNE1	DRES-17|DRES17|H-PRUNE|HTCD37|NMIHBA|PRUNE	prune exopolyphosphatase 1	protein-coding
121060	chr19	45865121	45865380	+	0	NA	intron (NM_004497, intron 1 of 1)	intron (NM_004497, intron 1 of 1)	924	NM_004497	3171		NM_004497	ENSG00000170608	FOXA3	FKHH3|HNF3G|TCF3G	forkhead box A3	protein-coding
93842	chr17	20994451	20994950	+	0	NA	Intergenic	Intergenic	48311	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
239192	chrY	12907351	12907450	+	0	NA	intron (NR_136722, intron 1 of 15)	intron (NR_136722, intron 1 of 15)	1695	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
231651	chr9	131642601	131643050	+	0	NA	intron (NM_001377935, intron 4 of 26)	intron (NM_001377935, intron 4 of 26)	8578	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
214967	chr7	151933071	151933530	+	0	NA	Intergenic	Intergenic	-23146	NR_033169	168391		NM_145292	ENSG00000106648	GALNTL5	GALNACT19|GALNT15|GalNAc-T5L	polypeptide N-acetylgalactosaminyltransferase like 5	protein-coding
160569	chr3	30695551	30695850	+	0	NA	Intergenic	Intergenic	89099	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
44738	chr11	111936621	111937750	+	0	NA	promoter-TSS (NM_001037954)	promoter-TSS (NM_001037954)	-158	NM_001037954	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
53817	chr12	69277551	69277850	+	0	NA	Intergenic	AluY|SINE|Alu	-4482	NR_031692	100302182		NR_031692	ENSG00000283476	MIR1279	MIRN1279|hsa-mir-1279	microRNA 1279	ncRNA
72978	chr15	40583701	40584430	+	0	NA	Intergenic	AluYc3|SINE|Alu	-10184	NM_144508	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
54667	chr12	93383301	93383500	+	0	NA	intron (NM_001301023, intron 1 of 4)	intron (NM_001301023, intron 1 of 4)	4822	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
47184	chr12	800621	800880	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	47827	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
74415	chr15	59029571	59029730	+	0	NA	intron (NM_001270530, intron 1 of 13)	intron (NM_001270530, intron 1 of 13)	41504	NM_001270530	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
239343	chrY	19392901	19393250	+	0	NA	Intergenic	L1PB1|LINE|L1	110078	NR_002923	286554		NM_173700	ENSG00000291031	BCORP1	BCORL2	BCL6 corepressor pseudogene 1	pseudo
146755	chr20	50821621	50822300	+	0	NA	intron (NM_198799, intron 2 of 4)	MIR1_Amn|SINE|MIR	26899	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
120386	chr19	43667301	43667500	+	0	NA	intron (NM_002659, intron 2 of 6)	L1M5|LINE|L1	2769	NM_001005377	5329		NM_002659	ENSG00000011422	PLAUR	CD87|U-PAR|UPAR|URKR	plasminogen activator, urokinase receptor	protein-coding
7950	chr1	37556421	37557200	+	0	NA	promoter-TSS (NM_003462)	promoter-TSS (NM_003462)	-130	NM_003462	7802		NM_003462	ENSG00000163879	DNALI1	P28|SPGF83|dJ423B22.5|hp28	dynein axonemal light intermediate chain 1	protein-coding
109229	chr19	493901	494630	+	0	NA	Intergenic	Intergenic	-2221	NM_130762	8174		NM_130760	ENSG00000099866	MADCAM1	MACAM1	mucosal vascular addressin cell adhesion molecule 1	protein-coding
239227	chrY	12941251	12941630	+	0	NA	Intergenic	Intergenic	35735	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
68636	chr14	89767571	89768380	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-148810	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
81575	chr16	9140001	9140350	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	48531	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
238937	chrX	154799471	154799830	+	0	NA	intron (NM_001166460, intron 1 of 11)	intron (NM_001166460, intron 1 of 11)	5835	NM_002436	4354		NM_002436	ENSG00000130830	MPP1	AAG12|DXS552E|EMP55|MRG1|PEMP	MAGUK p55 scaffold protein 1	protein-coding
203684	chr7	1022701	1023100	+	0	NA	TTS (NR_029898)	TTS (NR_029898)	126	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
108939	chr18	79486451	79486550	+	0	NA	exon (NM_006162, exon 9 of 10)	exon (NM_006162, exon 9 of 10)	86201	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
34225	chr10	129967851	129968230	+	0	NA	Intergenic	CpG-3521	-3766	NM_001375390	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
231378	chr9	130691221	130691480	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-2410	NM_001282709	23404		NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|SHRF|hRrp4p|p7	exosome component 2	protein-coding
147145	chr20	56373021	56373350	+	0	NA	intron (NM_001323304, intron 8 of 9)	intron (NM_001323304, intron 8 of 9)	14211	NM_080821	116151		NM_080821	ENSG00000124098	FAM210B	5A3|C20orf108|dJ1167H4.1	family with sequence similarity 210 member B	protein-coding
88096	chr16	81518951	81519700	+	0	NA	intron (NM_030629, intron 1 of 20)	AluJb|SINE|Alu	-14577	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
192785	chr6	26543301	26544280	+	0	NA	intron (NM_006353, intron 1 of 1)	AluSx|SINE|Alu	5424	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
97130	chr17	42540551	42541850	+	0	NA	exon (NM_000263, exon 5 of 6)	exon (NM_000263, exon 5 of 6)	4959	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
41307	chr11	65879271	65880130	+	0	NA	promoter-TSS (NM_001335)	promoter-TSS (NM_001335)	-137	NM_001335	1521		NM_001335	ENSG00000172543	CTSW	LYPN	cathepsin W	protein-coding
206673	chr7	36378451	36379350	+	0	NA	intron (NM_001100425, intron 2 of 6)	L1P2|LINE|L1	-10962	NM_001284301	54443		NM_018685	ENSG00000011426	ANLN	FSGS8|Scraps|scra	anillin, actin binding protein	protein-coding
36069	chr11	2981201	2981830	+	0	NA	intron (NM_001369380, intron 1 of 14).2	intron (NM_001369380, intron 1 of 14).2	9588	NM_001369379	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
174535	chr4	40192021	40192480	+	0	NA	promoter-TSS (NM_001278367)	promoter-TSS (NM_001278367)	-709	NM_001278366	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
39628	chr11	61435401	61436050	+	0	NA	intron (NM_017841, intron 1 of 3)	intron (NM_017841, intron 1 of 3)	5601	NM_017841	54949		NM_017841	ENSG00000167985	SDHAF2	C11orf79|PGL2|PPGL2|SDH5|hSDH5	succinate dehydrogenase complex assembly factor 2	protein-coding
133613	chr2	126653921	126654180	+	0	NA	Intergenic	Intergenic	-1885	NM_016815	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
2067	chr1	7928971	7929130	+	0	NA	intron (NM_001561, intron 7 of 7)	MER65A|LTR|ERV1	11789	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
126222	chr2	26970221	26971750	+	0	NA	intron (NM_012326, intron 1 of 6)	CpG	348	NM_012326	22924		NM_012326	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule associated protein RP/EB family member 3	protein-coding
162565	chr3	48657971	48658130	+	0	NA	intron (NM_001407, intron 1 of 34)	intron (NM_001407, intron 1 of 34)	4836	NM_001407	1951		NM_001407	ENSG00000008300	CELSR3	ADGRC3|CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1	cadherin EGF LAG seven-pass G-type receptor 3	protein-coding
184140	chr5	94850221	94850650	+	0	NA	intron (NM_024717, intron 17 of 22)	intron (NM_024717, intron 17 of 22)	231431	NM_001002796	79772		NM_024717	ENSG00000175471	MCTP1	-	multiple C2 and transmembrane domain containing 1	protein-coding
141174	chr2	239279171	239279730	+	0	NA	intron (NM_006037, intron 2 of 26)	MIRb|SINE|MIR	-26012	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
96401	chr17	40143221	40143880	+	0	NA	intron (NM_007359, intron 3 of 13)	AluSc|SINE|Alu	3013	NM_007359	22794		NM_007359	ENSG00000108349	CASC3	BTZ|MLN51	CASC3 exon junction complex subunit	protein-coding
96895	chr17	42120051	42120150	+	0	NA	exon (NM_021078, exon 4 of 18)	exon (NM_021078, exon 4 of 18)	1267	NM_021078	2648		NM_021078	ENSG00000108773	KAT2A	GCN5|GCN5L2|PCAF-b|hGCN5	lysine acetyltransferase 2A	protein-coding
203783	chr7	1239351	1239700	+	0	NA	Intergenic	CpG-25321	6653	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
21443	chr1	205456701	205457530	+	0	NA	intron (NR_148934, intron 2 of 2)	CpG	-1029	NR_103783								
63946	chr14	22095571	22096030	+	0	NA	Intergenic	Intergenic	336953	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
72741	chr15	39426801	39427700	+	0	NA	Intergenic	Intergenic	-153829	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
222031	chr8	130193671	130194180	+	0	NA	intron (NM_001362924, intron 5 of 30)	AluSz6|SINE|Alu	102608	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
223662	chr8	144373501	144375380	+	0	NA	intron (NM_174922, intron 1 of 14)	CpG	393	NM_174922	203054		NM_174922	ENSG00000173137	ADCK5	-	aarF domain containing kinase 5	protein-coding
208032	chr7	55884051	55884850	+	0	NA	Intergenic	Intergenic	-3006	NM_001366796	349075		NM_182633	ENSG00000178665	ZNF713	-	zinc finger protein 713	protein-coding
3668	chr1	16443521	16443780	+	0	NA	exon (NM_001145278, exon 2 of 8)	exon (NM_001145278, exon 2 of 8)	2926	NM_018090	55707		NM_018090	ENSG00000157191	NECAP2	-	NECAP endocytosis associated 2	protein-coding
70854	chr14	103706671	103707180	+	0	NA	intron (NM_001371232, intron 6 of 9)	intron (NM_001371232, intron 6 of 9)	8526	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
19598	chr1	179807371	179807730	+	0	NA	intron (NM_001329717, intron 2 of 5)	intron (NM_001329717, intron 2 of 5)	3626	NR_162130	113219451		NR_162130		MIR12116	-	microRNA 12116	ncRNA
222304	chr8	133484151	133485280	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	87172	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
195888	chr6	41702171	41702360	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	31345	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
140229	chr2	231729151	231729650	+	0	NA	Intergenic	Intergenic	16086	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
212351	chr7	127586721	127587100	+	0	NA	Intergenic	Intergenic	-1314	NM_024523	79571		NM_024523	ENSG00000179562	GCC1	GCC1P|GCC88	GRIP and coiled-coil domain containing 1	protein-coding
187373	chr5	141853301	141853850	+	0	NA	3' UTR (NM_032420, exon 5 of 5)	3' UTR (NM_032420, exon 5 of 5)	12627	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
177609	chr4	121074021	121074700	+	0	NA	Intergenic	L2c|LINE|L2	-1825	NM_024574	79625		NM_024574	ENSG00000173376	NDNF	C4orf31|HH25|NORD	neuron derived neurotrophic factor	protein-coding
204476	chr7	4733921	4734650	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	-41338	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
201155	chr6	142928001	142929350	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	16501	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
198803	chr6	109010921	109011180	+	0	NA	intron (NM_014454, intron 1 of 9)	L4_A_Mam|LINE|RTE-X	-1495	NM_001199933	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
179407	chr4	184100301	184100500	+	0	NA	intron (NM_153343, intron 6 of 7)	intron (NM_153343, intron 6 of 7)	117473	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
96860	chr17	42027101	42027300	+	0	NA	intron (NM_001378270, intron 8 of 8)	intron (NM_001378270, intron 8 of 8)	7110	NM_001144929	28511		NM_017595	ENSG00000168256	NKIRAS2	KBRAS2|kappaB-Ras2	NFKB inhibitor interacting Ras like 2	protein-coding
133714	chr2	127364771	127365650	+	0	NA	intron (NM_001371911, intron 1 of 16)	MIRb|SINE|MIR	-21981	NM_006609	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
1411	chr1	2561521	2562680	+	0	NA	intron (NM_003820, intron 6 of 7).2	intron (NM_003820, intron 6 of 7).2	-4435	NR_121638	100996583		NR_121638	ENSG00000228037	LOC100996583	-	uncharacterized LOC100996583	ncRNA
206774	chr7	36717371	36717730	+	0	NA	intron (NM_001177506, intron 1 of 21)	MLT1O|LTR|ERVL-MaLR	6944	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
162472	chr3	48517821	48518080	+	0	NA	3' UTR (NM_001317138, exon 15 of 15)	3' UTR (NM_001317138, exon 15 of 15)	-13124	NM_001272066	51246		NM_016479	ENSG00000164054	SHISA5	SCOTIN	shisa family member 5	protein-coding
56743	chr12	120134221	120134650	+	0	NA	intron (NM_006836, intron 52 of 57)	intron (NM_006836, intron 52 of 57)	-17682	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
193128	chr6	29004901	29005720	+	0	NA	promoter-TSS (NM_001382360)	promoter-TSS (NM_001382360)	5	NM_001382360	282890		NM_001010877	ENSG00000197935	ZNF311	zf31	zinc finger protein 311	protein-coding
139024	chr2	218397801	218398900	+	0	NA	5' UTR (NM_001206878, exon 1 of 7)	5' UTR (NM_001206878, exon 1 of 7)	117	NM_001206878	58190		NM_021198	ENSG00000144579	CTDSP1	NIF3|NLI-IF|NLIIF|SCP1	CTD small phosphatase 1	protein-coding
144843	chr20	36884621	36885350	+	0	NA	intron (NM_080628, intron 4 of 6)	AluSq|SINE|Alu	8847	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
54378	chr12	89825671	89826030	+	0	NA	Intergenic	L1M6|LINE|L1	-116484	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
178066	chr4	140060251	140060550	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-67615	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
177959	chr4	139018471	139018630	+	0	NA	intron (NM_012118, intron 1 of 2)	intron (NM_012118, intron 1 of 2)	2769	NM_012118	25819		NM_012118	ENSG00000151014	NOCT	CCR4L|CCRN4L|Ccr4c|NOC	nocturnin	protein-coding
53034	chr12	57607201	57608130	+	0	NA	intron (NM_178502, intron 5 of 6)	intron (NM_178502, intron 5 of 6)	-2451	NM_001111270	115557		NM_133483	ENSG00000240771	ARHGEF25	GEFT|p63RhoGEF	Rho guanine nucleotide exchange factor 25	protein-coding
5914	chr1	26837601	26837800	+	0	NA	intron (NM_032283, intron 2 of 7)	AluSx|SINE|Alu	11012	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
104424	chr17	81069651	81070050	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	12116	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
154220	chr22	31525501	31525800	+	0	NA	intron (NM_001258326, intron 2 of 30)	AluJb|SINE|Alu	29114	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
212857	chr7	130850601	130851200	+	0	NA	Intergenic	L1MB5|LINE|L1	25910	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
58517	chr12	132188101	132188300	+	0	NA	intron (NR_146452, intron 1 of 1)	MLT1E2|LTR|ERVL-MaLR	1495	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
44820	chr11	113878371	113878730	+	0	NA	Intergenic	AluJb|SINE|Alu	-2978	NM_001346252	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
169668	chr3	171618751	171618850	+	0	NA	intron (NM_001130081, intron 23 of 25)	intron (NM_001130081, intron 23 of 25)	-158392	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
59092	chr13	21110601	21111100	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-29664	NM_005870	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
129390	chr2	68820571	68820930	+	0	NA	intron (NM_001364820, intron 8 of 9)	L1MC5a|LINE|L1	45840	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
183405	chr5	77925501	77925700	+	0	NA	intron (NR_105012, intron 1 of 1)	L1MEb|LINE|L1	-32647	NR_105013	101929154		NR_105012	ENSG00000287162	LOC101929154	-	uncharacterized LOC101929154	ncRNA
191039	chr6	3209021	3209730	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-13608	NR_038295	100507194		NR_038295	ENSG00000230269	LINC02525	TP53LC14|lncNB1	long intergenic non-protein coding RNA 2525	ncRNA
95074	chr17	32922051	32922750	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-5510	NM_001301746	26022		NM_015544	ENSG00000006042	TMEM98	TADA1	transmembrane protein 98	protein-coding
87649	chr16	74570351	74570880	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluJr|SINE|Alu	36499	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
215459	chr7	157933151	157934030	+	0	NA	intron (NM_130842, intron 10 of 21)	intron (NM_130842, intron 10 of 21)	79005	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
49424	chr12	23205201	23205480	+	0	NA	Intergenic	Intergenic	29704	NR_120471	107984516		NR_120471	ENSG00000256995	LINC02955	-	long intergenic non-protein coding RNA 2955	ncRNA
170163	chr3	183560601	183560850	+	0	NA	Intergenic	Intergenic	-5019	NM_130446	89857		NM_130446	ENSG00000172578	KLHL6	-	kelch like family member 6	protein-coding
239076	chrY	7336351	7337300	+	0	NA	intron (NR_028062, intron 3 of 7)	L1MB5|LINE|L1	62853	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
152079	chr22	19755171	19755330	+	0	NA	Intergenic	(CGCTCC)n|Simple_repeat|Simple_repeat	-1453	NM_005992	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
106726	chr18	23505501	23506150	+	0	NA	intron (NM_001318707, intron 2 of 16)	intron (NM_001318707, intron 2 of 16)	2314	NM_013326	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
60406	chr13	40966901	40968080	+	0	NA	intron (NM_001370329, intron 2 of 9)	MIR|SINE|MIR	14792	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
9780	chr1	53525321	53525780	+	0	NA	intron (NM_147193, intron 4 of 9)	intron (NM_147193, intron 4 of 9)	66151	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
144221	chr20	34369101	34370050	+	0	NA	intron (NM_031483, intron 2 of 24)	intron (NM_031483, intron 2 of 24)	6302	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
122880	chr19	50508301	50508700	+	0	NA	intron (NM_138334, intron 2 of 4)	intron (NM_138334, intron 2 of 4)	2691	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
174902	chr4	49095501	49095700	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	108958	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
41109	chr11	65545771	65547200	+	0	NA	exon (NM_001164266, exon 16 of 27)	exon (NM_001164266, exon 16 of 27)	11743	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
45101	chr11	117091621	117092180	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluJr|SINE|Alu	6528	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
24559	chr1	244904071	244904230	+	0	NA	Intergenic	AluJo|SINE|Alu	-39607	NM_031844	3192		NM_004501	ENSG00000153187	HNRNPU	DEE54|EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120	heterogeneous nuclear ribonucleoprotein U	protein-coding
143194	chr20	24930051	24930680	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-18904	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
18210	chr1	160985901	160986100	+	0	NA	Intergenic	LTR7B|LTR|ERV1	-31191	NM_080878	142683		NM_080878	ENSG00000158764	ITLN2	HL-2|HL2	intelectin 2	protein-coding
132470	chr2	105883621	105884280	+	0	NA	intron (NM_001004720, intron 3 of 3)	intron (NM_001004720, intron 3 of 3)	32103	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
151621	chr22	12692151	12692750	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	795044	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
223916	chr9	469751	471030	+	0	NA	promoter-TSS (NM_001256876)	promoter-TSS (NM_001256876)	99	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
39446	chr11	60935701	60935900	+	0	NA	intron (NM_017870, intron 10 of 10)	intron (NM_017870, intron 10 of 10)	11340	NM_178031	54972		NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
174652	chr4	40749771	40750400	+	0	NA	5' UTR (NM_001330648, exon 1 of 11)	5' UTR (NM_001330648, exon 1 of 11)	130	NM_024677	79730		NM_024677	ENSG00000179299	NSUN7	-	NOP2/Sun RNA methyltransferase family member 7	protein-coding
167765	chr3	132659611	132661250	+	0	NA	promoter-TSS (NR_132427)	promoter-TSS (NR_132427)	101	NM_024818	79876		NM_024818	ENSG00000081307	UBA5	DEE44|EIEE44|SCAR24|THIFP1|UBE1DC1	ubiquitin like modifier activating enzyme 5	protein-coding
8538	chr1	41021501	41022850	+	0	NA	promoter-TSS (NM_001377532)	promoter-TSS (NM_001377532)	-420	NM_001168247	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
45808	chr11	119344501	119345180	+	0	NA	intron (NM_031433, intron 6 of 14)	intron (NM_031433, intron 6 of 14)	1865	NM_031433	83552		NM_031433	ENSG00000235718	MFRP	CTRP5|MCOP5|NNO2|RD6	membrane frizzled-related protein	protein-coding
141620	chr2	241675671	241677330	+	0	NA	intron (NR_135492, intron 4 of 4)	intron (NR_135492, intron 4 of 4)	10315	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
228598	chr9	104993021	104993680	+	0	NA	Intergenic	Intergenic	-65195	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
233398	chr9	137556301	137556500	+	0	NA	3' UTR (NM_001346374, exon 8 of 8)	3' UTR (NM_001346374, exon 8 of 8)	4521	NM_032477	64975		NM_032477	ENSG00000182154	MRPL41	BMRP|MRP-L27|MRPL27|PIG3|RPML27|mL41	mitochondrial ribosomal protein L41	protein-coding
163051	chr3	49903621	49905100	+	0	NA	promoter-TSS (NM_001318913)	promoter-TSS (NM_001318913)	-487	NM_001244937	4486		NM_002447	ENSG00000164078	MST1R	CD136|CDw136|NPCA3|PTK8|RON|SEA|p185-Ron	macrophage stimulating 1 receptor	protein-coding
162	chr1	603551	603850	+	0	NA	Intergenic	Intergenic	25309	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
65911	chr14	55287301	55287500	+	0	NA	intron (NM_152231, intron 1 of 1)	Tigger4|DNA|TcMar-Tigger	15246	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
61919	chr13	77751521	77752100	+	0	NA	intron (NM_001242868, intron 4 of 6)	intron (NM_001242868, intron 4 of 6)	10591	NM_144595	122060		NM_144595	ENSG00000139737	SLAIN1	C13orf32	SLAIN motif family member 1	protein-coding
37314	chr11	14768421	14769580	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	122671	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
205870	chr7	25018571	25019180	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-38697	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
157177	chr22	43013521	43014600	+	0	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	1089	NM_001184970	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
74632	chr15	60787621	60788530	+	0	NA	intron (NM_134261, intron 1 of 10)	L2b|LINE|L2	106506	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
10501	chr1	66533921	66534180	+	0	NA	promoter-TSS (NM_001376544)	promoter-TSS (NM_001376544)	-103	NM_001376555	84251		NM_032291	ENSG00000118473	SGIP1	-	SH3GL interacting endocytic adaptor 1	protein-coding
155964	chr22	39839901	39840600	+	0	NA	intron (NM_152512, intron 3 of 6)	AmnSINE1|SINE|5S-Deu-L2	53510	NM_152512	150350		NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
187046	chr5	139863821	139864380	+	0	NA	intron (NM_013982, intron 5 of 10)	intron (NM_013982, intron 5 of 10)	68292	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
197585	chr6	79949121	79949880	+	0	NA	Intergenic	Intergenic	-1947	NM_022726	6785		NM_022726	ENSG00000118402	ELOVL4	ADMD|CT118|ISQMR|SCA34|STGD2|STGD3	ELOVL fatty acid elongase 4	protein-coding
205345	chr7	12688971	12689330	+	0	NA	3' UTR (NM_001037164, exon 2 of 2)	3' UTR (NM_001037164, exon 2 of 2)	1517	NM_005738	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
128189	chr2	53933171	53933530	+	0	NA	intron (NM_014614, intron 8 of 46)	AluSx1|SINE|Alu	37643	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
172816	chr4	3047501	3048700	+	0	NA	Intergenic	LTR13_|LTR|ERVK	26414	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
167839	chr3	133894571	133894930	+	0	NA	intron (NM_001363953, intron 1 of 8)	CpG	1097	NM_001363953	51560		NM_016577	ENSG00000154917	RAB6B	-	RAB6B, member RAS oncogene family	protein-coding
21819	chr1	207326121	207326450	+	0	NA	intron (NM_001300904, intron 4 of 10)	intron (NM_001300904, intron 4 of 10)	4607	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
194781	chr6	34154671	34155430	+	0	NA	intron (NM_001256809, intron 1 of 8)	CpG	572	NM_001256809	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
219575	chr8	79692951	79693680	+	0	NA	Intergenic	Intergenic	73160	NM_001282851	23462		NM_012258	ENSG00000164683	HEY1	BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1	hes related family bHLH transcription factor with YRPW motif 1	protein-coding
25811	chr10	11193301	11194230	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	28735	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
164561	chr3	63993351	63994280	+	0	NA	intron (NM_001177387, intron 10 of 12)	intron (NM_001177387, intron 10 of 12)	-10207	NR_038286	100507062		NR_038286	ENSG00000239653	PSMD6-AS2	-	PSMD6 antisense RNA 2	ncRNA
137981	chr2	201220201	201220630	+	0	NA	3' UTR (NM_001206524, exon 8 of 8)	3' UTR (NM_001206524, exon 8 of 8)	-13028	NM_001228	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
200712	chr6	137494271	137494730	+	0	NA	promoter-TSS (NM_175747)	promoter-TSS (NM_175747)	-106	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
82910	chr16	21657201	21658850	+	0	NA	TTS (NM_001288659)	TTS (NM_001288659)	-5417	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
143929	chr20	32739571	32740200	+	0	NA	intron (NM_053041, intron 1 of 8)	AluSz|SINE|Alu	3582	NM_001099339	149951		NM_053041	ENSG00000149600	COMMD7	C20orf92|dJ1085F17.3	COMM domain containing 7	protein-coding
172531	chr4	2299751	2299850	+	0	NA	intron (NM_020972, intron 8 of 12)	AluJr|SINE|Alu	-37691	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
25118	chr10	3978751	3979250	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-12160	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
233366	chr9	137470901	137471130	+	0	NA	intron (NM_001098537, intron 25 of 34)	L1MEg|LINE|L1	-11681	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228566	chr9	101977701	101977900	+	0	NA	Intergenic	Intergenic	-239153	NM_133445	116443		NM_133445	ENSG00000198785	GRIN3A	GluN3A|NMDAR-L|NMDAR3A|NR3A	glutamate ionotropic receptor NMDA type subunit 3A	protein-coding
121119	chr19	45993771	45994130	+	0	NA	Intergenic	AluJo|SINE|Alu	-1517	NM_001267723	729440		NM_001080402	ENSG00000104983	CCDC61	VFL3|hVFL3	coiled-coil domain containing 61	protein-coding
134447	chr2	143158571	143159330	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	29531	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
96529	chr17	40349601	40349880	+	0	NA	intron (NM_000964, intron 3 of 8)	intron (NM_000964, intron 3 of 8)	-6604	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
204449	chr7	4097201	4097400	+	0	NA	intron (NM_152744, intron 22 of 44)	intron (NM_152744, intron 22 of 44)	-32385	NM_001079653	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
185278	chr5	126376121	126376200	+	0	NA	intron (NM_001146319, intron 1 of 13)	intron (NM_001146319, intron 1 of 13)	16040	NM_001146319	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
120501	chr19	44777871	44778530	+	0	NA	exon (NM_001130852, exon 1 of 10)	exon (NM_001130852, exon 1 of 10)	310	NM_012116	23624		NM_012116	ENSG00000142273	CBLC	CBL-3|CBL-SL|RNF57	Cbl proto-oncogene C	protein-coding
213131	chr7	131365151	131365450	+	0	NA	intron (NM_001321316, intron 1 of 17)	L1PA14|LINE|L1	37424	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
110554	chr19	2104101	2104480	+	0	NA	intron (NM_001374799, intron 31 of 31)	(CCAACA)n|Simple_repeat|Simple_repeat	7375	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
28546	chr10	50561921	50562250	+	0	NA	intron (NM_147156, intron 2 of 10)	intron (NM_147156, intron 2 of 10)	61871	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
102256	chr17	75268701	75269100	+	0	NA	intron (NM_001363806, intron 2 of 4)	AluSq2|SINE|Alu	1345	NM_001242500	57409		NM_020679	ENSG00000125457	MIF4GD	AD023|MIFD|SLIP1	MIF4G domain containing	protein-coding
69310	chr14	93169771	93169930	+	0	NA	Intergenic	LTR12C|LTR|ERV1	15047	NM_022151	64112		NM_022151	ENSG00000165943	MOAP1	MAP-1|PNMA4	modulator of apoptosis 1	protein-coding
159257	chr3	12937171	12937530	+	0	NA	intron (NM_014869, intron 2 of 13)	intron (NM_014869, intron 2 of 13)	30380	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
97883	chr17	45099021	45099900	+	0	NA	exon (NM_021079, exon 8 of 12)	exon (NM_021079, exon 8 of 12)	14973	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
169940	chr3	179031951	179032200	+	0	NA	intron (NR_164721, intron 2 of 5)	SVA_B|Retroposon|SVA	37267	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
191333	chr6	7107501	7108200	+	0	NA	promoter-TSS (NM_001003700)	intron (NM_001168344, intron 1 of 11)	107	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
169696	chr3	172057221	172057480	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	16819	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
48619	chr12	10372251	10373080	+	0	NA	3' UTR (NM_007360, exon 8 of 8)	3' UTR (NM_007360, exon 8 of 8)	8896	NR_120430	101928100		NR_120430	ENSG00000245648	KLRK1-AS1	TP53LC04	KLRK1 antisense RNA 1	ncRNA
38687	chr11	46562201	46562600	+	0	NA	intron (NM_001367471, intron 1 of 18)	L2a|LINE|L2	25044	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
60355	chr13	40829171	40829450	+	0	NA	intron (NR_038259, intron 4 of 5)	L1PA2|LINE|L1	18544	NR_030352	693206		NR_030352	ENSG00000207652	MIR621	MIRN621|hsa-mir-621	microRNA 621	ncRNA
64681	chr14	32205951	32206450	+	0	NA	Intergenic	Intergenic	-2931	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA
168219	chr3	141274801	141275450	+	0	NA	intron (NM_001282728, intron 3 of 6)	intron (NM_001282728, intron 3 of 6)	43300	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
98054	chr17	45445751	45446730	+	0	NA	intron (NM_014798, intron 8 of 11).3	intron (NM_014798, intron 8 of 11).3	-13370	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
90785	chr17	2084271	2084430	+	0	NA	intron (NM_001282326, intron 2 of 6)	intron (NM_001282326, intron 2 of 6)	4411	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
32289	chr10	102128671	102129030	+	0	NA	Intergenic	AluYm1|SINE|Alu	-4144	NM_001288727	23082		NM_015062	ENSG00000148840	PPRC1	PRC	PPARG related coactivator 1	protein-coding
42217	chr11	68036021	68036280	+	0	NA	intron (NM_002496, intron 5 of 6)	intron (NM_002496, intron 5 of 6)	2253	NR_039840	100616403		NR_039840	ENSG00000284435	MIR4691	mir-4691	microRNA 4691	ncRNA
219462	chr8	73174151	73174650	+	0	NA	Intergenic	Intergenic	-81228	NM_153225	157869		NM_153225	ENSG00000164764	SBSPON	C8orf84|RPESP	somatomedin B and thrombospondin type 1 domain containing	protein-coding
85303	chr16	49442271	49442430	+	0	NA	Intergenic	Intergenic	68546	NM_144602	123970		NM_144602	ENSG00000166152	C16orf78	-	chromosome 16 open reading frame 78	protein-coding
161289	chr3	39325851	39326550	+	0	NA	Intergenic	Intergenic	-3509	NM_005201	1237		NM_005201	ENSG00000179934	CCR8	CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1	C-C motif chemokine receptor 8	protein-coding
224035	chr9	3480471	3480830	+	0	NA	intron (NM_001282116, intron 1 of 16)	intron (NM_001282116, intron 1 of 16)	8784	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
130682	chr2	86468271	86469030	+	0	NA	intron (NM_001146688, intron 10 of 25)	intron (NM_001146688, intron 10 of 25)	27189	NM_001146688	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
71647	chr14	106789421	106789680	+	0	NA	Intergenic	L1ME2|LINE|L1	61449	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
98542	chr17	47663801	47664800	+	0	NA	intron (NM_002265, intron 8 of 21)	intron (NM_002265, intron 8 of 21)	13235	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
225433	chr9	35074401	35075030	+	0	NA	intron (NM_004629, intron 12 of 13)	intron (NM_004629, intron 12 of 13)	-2047	NM_001354927	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
152373	chr22	20511021	20511280	+	0	NA	intron (NM_001293237, intron 1 of 16)	intron (NM_001293237, intron 1 of 16)	3103	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
88326	chr16	84503921	84505210	+	0	NA	promoter-TSS (NM_020947)	promoter-TSS (NM_020947)	94	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
111756	chr19	4372771	4372930	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	27697	NM_003025	6455		NM_003025	ENSG00000141985	SH3GL1	CNSA1|EEN|SH3D2B|SH3P8	SH3 domain containing GRB2 like 1, endophilin A2	protein-coding
227261	chr9	89362821	89363430	+	0	NA	intron (NM_001371200, intron 20 of 20)	intron (NM_001371200, intron 20 of 20)	44274	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
97721	chr17	44354501	44356700	+	0	NA	intron (NM_198475, intron 7 of 7)	intron (NM_198475, intron 7 of 7)	8253	NM_198475	284069		NM_198475	ENSG00000161682	FAM171A2	-	family with sequence similarity 171 member A2	protein-coding
150075	chr21	37403051	37403150	+	0	NA	intron (NM_001347723, intron 1 of 10)	L1MEf|LINE|L1	-15805	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
199322	chr6	113306651	113306750	+	0	NA	Intergenic	Intergenic	126747	NR_149098	105377957		NR_149098	ENSG00000232316	LINC02518	-	long intergenic non-protein coding RNA 2518	ncRNA
80732	chr16	3125821	3126280	+	0	NA	intron (NR_110900, intron 5 of 5)	intron (NR_110900, intron 5 of 5)	8832	NR_110900	100507458		NR_110900		ZNF213-AS1	-	ZNF213 antisense RNA 1 (head to head)	ncRNA
32938	chr10	110307251	110307630	+	0	NA	Intergenic	AluSx|SINE|Alu	-2520	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
11894	chr1	93178451	93178550	+	0	NA	intron (NR_030761, intron 1 of 4)	L2b|LINE|L2	1913	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
127552	chr2	42343971	42344130	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	15988	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
214355	chr7	149598771	149599300	+	0	NA	intron (NR_027788, intron 3 of 7)	intron (NR_027788, intron 3 of 7)	25755	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
17947	chr1	160375151	160376160	+	0	NA	Intergenic	Intergenic	8584	NM_005598	4807		NM_005598	ENSG00000171786	NHLH1	HEN1|NSCL|NSCL1|bHLHa35	nescient helix-loop-helix 1	protein-coding
118848	chr19	38639271	38639600	+	0	NA	Intergenic	AluY|SINE|Alu	-8214	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
20585	chr1	198751471	198751630	+	0	NA	intron (NM_002838, intron 29 of 32)	intron (NM_002838, intron 29 of 32)	107432	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA
201613	chr6	149382621	149382880	+	0	NA	intron (NM_001369506, intron 4 of 7)	intron (NM_001369506, intron 4 of 7)	-17512	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
205958	chr7	26155051	26155650	+	0	NA	intron (NM_004289, intron 1 of 3)	AluSz|SINE|Alu	3152	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
96370	chr17	40100201	40102000	+	0	NA	promoter-TSS (NM_021724)	promoter-TSS (NM_021724)	-511	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
146114	chr20	48449421	48449680	+	0	NA	Intergenic	L2c|LINE|L2	89639	NR_026958	284749		NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
200831	chr6	138002721	138002980	+	0	NA	Intergenic	AluJo|SINE|Alu	-57050	NR_149097	105378020		NR_149097	ENSG00000226004	SIMALR	LINC02528	suppressor of inflammatory macrophage apoptosis lncRNA	ncRNA
138614	chr2	209423671	209424650	+	0	NA	5' UTR (NM_001375499, exon 1 of 13)	5' UTR (NM_001375499, exon 1 of 13)	113	NM_001375498	4133		NM_002374	ENSG00000078018	MAP2	MAP-2|MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
214589	chr7	150645401	150645800	+	0	NA	Intergenic	Tigger5b|DNA|TcMar-Tigger	-12952	NM_001244072	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
157042	chr22	42572171	42572730	+	0	NA	TTS (NR_002184)	TTS (NR_002184)	9561	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
12459	chr1	107828021	107828280	+	0	NA	intron (NM_006113, intron 2 of 26)	intron (NM_006113, intron 2 of 26)	-69073	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
160987	chr3	37245221	37245480	+	0	NA	intron (NM_001172713, intron 1 of 22)	MIR|SINE|MIR	-1155	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
202490	chr6	158290671	158291300	+	0	NA	Intergenic	MIR|SINE|MIR	-21480	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
200516	chr6	135926151	135926250	+	0	NA	intron (NM_018945, intron 1 of 12)	AluY|SINE|Alu	74499	NM_018945	27115		NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
226996	chr9	83631171	83631530	+	0	NA	intron (NR_046421, intron 2 of 3)	AluJr|SINE|Alu	8207	NR_046422	414328		NM_001001551	ENSG00000148057	IDNK	C9orf103|bA522I20.2|hGntK	IDNK gluconokinase	protein-coding
212214	chr7	120800171	120800700	+	0	NA	intron (NM_012338, intron 7 of 7)	MER31A|LTR|ERV1	57709	NM_012338	23554		NM_012338	ENSG00000106025	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
53618	chr12	68150901	68151330	+	0	NA	Intergenic	L1MC4|LINE|L1	8625	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
54868	chr12	95552271	95553730	+	0	NA	Intergenic	AluSg|SINE|Alu	-1524	NM_032147	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
228762	chr9	110235351	110235450	+	0	NA	Intergenic	L1PA4|LINE|L1	21107	NM_003329	7295		NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1|TXN1|Trx80	thioredoxin	protein-coding
131684	chr2	97724571	97725080	+	0	NA	intron (NM_001079, intron 3 of 13)	intron (NM_001079, intron 3 of 13)	-8475	NM_207519	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
13245	chr1	112700421	112701680	+	0	NA	TTS (NM_001042679)	TTS (NM_001042679)	6006	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
8168	chr1	39524051	39524350	+	0	NA	intron (NR_144357, intron 9 of 11)	intron (NR_144357, intron 9 of 11)	9334	NR_132962	192217		NR_132962	ENSG00000237624	OXCT2P1	OXCT2P	3-oxoacid CoA-transferase 2 pseudogene 1	pseudo
202761	chr6	159044791	159046500	+	0	NA	promoter-TSS (NM_138810)	promoter-TSS (NM_138810)	-493	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
27521	chr10	32307151	32307330	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	39918	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
205608	chr7	22110001	22110490	+	0	NA	Intergenic	Intergenic	83500	NM_001367601	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
88113	chr16	81556771	81557130	+	0	NA	intron (NM_030629, intron 1 of 20)	L1MD3|LINE|L1	23048	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
103378	chr17	78137321	78138200	+	0	NA	exon (NM_152468, exon 11 of 16)	exon (NM_152468, exon 11 of 16)	-5333	NM_007267	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
140096	chr2	231459201	231459800	+	0	NA	TTS (NR_004398)	TTS (NR_004398)	942	NR_004398	25826		NR_004398	ENSG00000202400	SNORD82	RNU82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA
39827	chr11	62070271	62070430	+	0	NA	Intergenic	Intergenic	-53661	NM_020238	3619		NM_020238	ENSG00000149503	INCENP	-	inner centromere protein	protein-coding
34136	chr10	128045721	128045980	+	0	NA	intron (NM_001323354, intron 2 of 19)	intron (NM_001323354, intron 2 of 19)	-1762	NM_130435	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
208683	chr7	73231301	73232030	+	0	NA	intron (NR_003186, intron 4 of 7)	G-rich|Low_complexity|Low_complexity	11026	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
236318	chrX	68828501	68829480	+	0	NA	promoter-TSS (NM_004429)	promoter-TSS (NM_004429)	-31	NM_004429	1947		NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
134004	chr2	130920451	130921030	+	0	NA	intron (NM_015320, intron 3 of 14)	intron (NM_015320, intron 3 of 14)	-42915	NM_001375903	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
214660	chr7	150898151	150899180	+	0	NA	Intergenic	Intergenic	46148	NM_001091	26		NM_001091	ENSG00000002726	AOC1	ABP|ABP1|DAO|DAO1|KAO|KDAO	amine oxidase copper containing 1	protein-coding
54161	chr12	76674971	76675130	+	0	NA	Intergenic	Intergenic	-89065	NM_015336	23390		NM_015336	ENSG00000186908	ZDHHC17	DHHC-17|DHHC17|HIP14|HIP3|HSPC294|HYPH	zinc finger DHHC-type palmitoyltransferase 17	protein-coding
134331	chr2	136108771	136108930	+	0	NA	Intergenic	Intergenic	7385	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
157199	chr22	43129001	43129430	+	0	NA	exon (NM_001197, exon 5 of 5)	exon (NM_001197, exon 5 of 5)	14182	NM_014507	27349		NM_014507	ENSG00000100294	MCAT	FASN2C|MCT|MCT1|MT|NET62|OPA15|fabD	malonyl-CoA-acyl carrier protein transacylase	protein-coding
117119	chr19	19212271	19212430	+	0	NA	intron (NM_004386, intron 1 of 14)	intron (NM_004386, intron 1 of 14)	392	NM_004386	1463		NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
28742	chr10	61984801	61985000	+	0	NA	intron (NM_032199, intron 3 of 9)	MIRb|SINE|MIR	-64457	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
135890	chr2	171154221	171154480	+	0	NA	intron (NM_001136554, intron 1 of 20)	MIR3|SINE|MIR	6543	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
114166	chr19	11357251	11357350	+	0	NA	intron (NM_001170635, intron 2 of 9)	intron (NM_001170635, intron 2 of 9)	1868	NM_022737	64748		NM_022737	ENSG00000105520	PLPPR2	LPPR2|PRG4	phospholipid phosphatase related 2	protein-coding
59104	chr13	21147521	21148400	+	0	NA	3' UTR (NM_005870, exon 4 of 4)	3' UTR (NM_005870, exon 4 of 4)	7414	NM_001366643	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
229544	chr9	122900771	122902130	+	0	NA	intron (NM_018835, intron 1 of 17)	intron (NM_018835, intron 1 of 17)	3909	NM_001354486	54542		NM_018835	ENSG00000056586	RC3H2	MNAB|RNF164	ring finger and CCCH-type domains 2	protein-coding
174427	chr4	39458271	39460450	+	0	NA	promoter-TSS (NM_001024921)	promoter-TSS (NM_001024921)	304	NM_001278590	11019		NM_006859	ENSG00000121897	LIAS	HGCLAS|HUSSY-01|LAS|LIP1|LS|PDHLD	lipoic acid synthetase	protein-coding
78000	chr15	89647051	89647500	+	0	NA	intron (NM_198525, intron 6 of 18)	intron (NM_198525, intron 6 of 18)	8192	NM_198525	374654		NM_198525	ENSG00000166813	KIF7	ACLS|AGBK|HLS2|JBTS12|MMEDF|UNQ340	kinesin family member 7	protein-coding
234207	chrX	12958321	12959000	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-15360	NR_030727	349408		NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
104209	chr17	80497621	80498380	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-21393	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
197053	chr6	53484551	53485130	+	0	NA	Intergenic	Intergenic	60261	NM_001197115	2729		NM_001498	ENSG00000001084	GCLC	GCL|GCS|GLCL|GLCLC	glutamate-cysteine ligase catalytic subunit	protein-coding
65152	chr14	45249701	45250350	+	0	NA	intron (NM_018353, intron 1 of 16)	intron (NM_018353, intron 1 of 16)	3177	NM_018353	55320		NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
79544	chr16	902871	903230	+	0	NA	intron (NM_001352017, intron 5 of 11)	intron (NM_001352017, intron 5 of 11)	-17983	NR_110946	101929387		NR_110945	ENSG00000260439	LMF1-AS1	LA16c-366D3.1	LMF1 antisense RNA 1	ncRNA
138713	chr2	213134321	213134780	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	15887	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
190910	chr6	2817151	2817250	+	0	NA	Intergenic	L1ME1|LINE|L1	24663	NR_073112	1992		NM_030666	ENSG00000021355	SERPINB1	EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2	serpin family B member 1	protein-coding
85061	chr16	32066221	32066530	+	0	NA	Intergenic	Intergenic	121738	NR_109773	100289574		NR_109773		HERC2P4	D16F37S5	HERC2 pseudogene 4	pseudo
81069	chr16	4334901	4335550	+	0	NA	intron (NM_001318918, intron 6 of 7).2	intron (NM_001318918, intron 6 of 7).2	-6885	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
51429	chr12	52024771	52026430	+	0	NA	intron (NM_001202233, intron 1 of 7)	L2a|LINE|L2	2768	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
55421	chr12	104493601	104493800	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	36752	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
201714	chr6	149723751	149724300	+	0	NA	TTS (NR_104456)	TTS (NR_104456)	-5769	NM_001270519	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
211261	chr7	102681771	102681930	+	0	NA	non-coding (NR_146066, exon 12 of 12)	non-coding (NR_146066, exon 12 of 12)	-10115	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
109096	chr18	79966821	79967550	+	0	NA	intron (NM_001136180, intron 2 of 3)	intron (NM_001136180, intron 2 of 3)	2542	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
232503	chr9	136265551	136266180	+	0	NA	intron (NM_001378188, intron 17 of 25)	intron (NM_001378188, intron 17 of 25)	-20053	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
133155	chr2	112707551	112708300	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-13561	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
28308	chr10	46256021	46256550	+	0	NA	intron (NR_103828, intron 1 of 2)	intron (NR_103828, intron 1 of 2)	13323	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
226640	chr9	74379851	74379950	+	0	NA	intron (NR_121182, intron 2 of 2)	intron (NR_121182, intron 2 of 2)	8369	NR_121182	101927358		NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
87341	chr16	70341421	70341680	+	0	NA	intron (NR_039997, intron 2 of 4)	intron (NR_039997, intron 2 of 4)	5197	NR_039997	100506083		NR_039997	ENSG00000261777	DDX19A-DT	-	DDX19A divergent transcript	ncRNA
193804	chr6	31441251	31442000	+	0	NA	promoter-TSS (NR_144465)	promoter-TSS (NR_144465)	-42	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
225221	chr9	34182251	34182900	+	0	NA	intron (NM_001171201, intron 1 of 5)	intron (NM_001171201, intron 1 of 5)	3532	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
80536	chr16	2773251	2773700	+	0	NA	intron (NM_207013, intron 3 of 4)	intron (NM_207013, intron 3 of 4)	3805	NM_207013	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
126146	chr2	26184321	26185980	+	0	NA	exon (NM_001191033, exon 3 of 6)	exon (NM_001191033, exon 3 of 6)	4434	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
111552	chr19	4043421	4043800	+	0	NA	3' UTR (NM_001317990, exon 3 of 3)	3' UTR (NM_001317990, exon 3 of 3)	21919	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
73623	chr15	44585421	44585880	+	0	NA	exon (NM_001160227, exon 29 of 38)	exon (NM_001160227, exon 29 of 38)	48503	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
208784	chr7	73581321	73581580	+	0	NA	Intergenic	AluSx|SINE|Alu	-2871	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
26729	chr10	22679271	22679980	+	0	NA	intron (NM_005028, intron 1 of 9)	L1MB7|LINE|L1	34483	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
36575	chr11	6665051	6665350	+	0	NA	Intergenic	Intergenic	-9391	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
79052	chr16	99251	99550	+	0	NA	intron (NM_001243249, intron 6 of 11)	AluSg|SINE|Alu	21175	NM_001015052	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
98746	chr17	48051751	48052330	+	0	NA	intron (NM_001330261, intron 2 of 5)	intron (NM_001330261, intron 2 of 5)	3681	NM_003204	4779		NM_003204	ENSG00000082641	NFE2L1	LCR-F1|NRF-1|NRF1|TCF11	NFE2 like bZIP transcription factor 1	protein-coding
127756	chr2	43950501	43950930	+	0	NA	intron (NM_133259, intron 14 of 37)	intron (NM_133259, intron 14 of 37)	45274	NM_133259	10128		NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC|MC4DN5	leucine rich pentatricopeptide repeat containing	protein-coding
112017	chr19	5039971	5040330	+	0	NA	intron (NM_001370093, intron 4 of 11)	intron (NM_001370093, intron 4 of 11)	71037	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
152097	chr22	19852671	19853300	+	0	NA	intron (NM_024627, intron 2 of 2)	intron (NM_024627, intron 2 of 2)	1889	NM_053004	54584		NM_053004	ENSG00000185838	GNB1L	DGCRK3|FKSG1|GY2|WDR14|WDVCF	G protein subunit beta 1 like	protein-coding
131783	chr2	98489471	98489830	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	43640	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
112384	chr19	6065651	6066230	+	0	NA	intron (NM_000635, intron 1 of 17)	intron (NM_000635, intron 1 of 17)	44560	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
48311	chr12	9000421	9000680	+	0	NA	intron (NM_005810, intron 3 of 4)	L1MB3|LINE|L1	10925	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
21484	chr1	205671801	205672400	+	0	NA	intron (NM_033102, intron 1 of 4)	intron (NM_033102, intron 1 of 4)	8409	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
101730	chr17	69246771	69246980	+	0	NA	3' UTR (NM_018672, exon 38 of 38)	3' UTR (NM_018672, exon 38 of 38)	-2027	NM_080282	10349		NM_080282	ENSG00000154263	ABCA10	EST698739	ATP binding cassette subfamily A member 10	protein-coding
214948	chr7	151782451	151783700	+	0	NA	intron (NM_016203, intron 2 of 15)	CpG	-23263	NM_001354885	644090		NM_001354885	ENSG00000242048	PRKAG2-AS2	-	PRKAG2 antisense RNA 2	ncRNA
179450	chr4	184419171	184419430	+	0	NA	intron (NM_002199, intron 3 of 8)	intron (NM_002199, intron 3 of 8)	-36994	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
17769	chr1	159056201	159056400	+	0	NA	Intergenic	MER61A|LTR|ERV1	20466	NM_004833	9447		NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding
162828	chr3	49170601	49171730	+	0	NA	promoter-TSS (NM_173546)	promoter-TSS (NM_173546)	-433	NM_173546	200942		NM_173546	ENSG00000185909	KLHDC8B	CHL	kelch domain containing 8B	protein-coding
64389	chr14	24158571	24158730	+	0	NA	intron (NM_001310332, intron 18 of 20).2	5S|rRNA|rRNA	-2615	NM_001385402	10379		NM_006084	ENSG00000213928	IRF9	IRF-9|ISGF3|ISGF3G|p48	interferon regulatory factor 9	protein-coding
62095	chr13	94620301	94620530	+	0	NA	intron (NM_180989, intron 5 of 8)	intron (NM_180989, intron 5 of 8)	18558	NM_180989	160897		NM_180989	ENSG00000152749	GPR180	ITR	G protein-coupled receptor 180	protein-coding
44075	chr11	95641501	95641980	+	0	NA	Intergenic	Intergenic	148042	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
16292	chr1	154166301	154166500	+	0	NA	3' UTR (NM_152263, exon 10 of 10)	3' UTR (NM_152263, exon 10 of 10)	-11284	NM_001159484	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
197359	chr6	73459401	73459900	+	0	NA	Intergenic	MER11D|LTR|ERVK	-2087	NM_133645	25821		NM_012123	ENSG00000135297	MTO1	CGI-02|COXPD10	mitochondrial tRNA translation optimization 1	protein-coding
94759	chr17	30817651	30818130	+	0	NA	intron (NM_015986, intron 1 of 7)	AluSc|SINE|Alu	6802	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
66466	chr14	61559751	61559850	+	0	NA	intron (NR_110417, intron 3 of 3)	MLT1L|LTR|ERVL-MaLR	10394	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
67263	chr14	69131271	69131630	+	0	NA	intron (NM_001284208, intron 1 of 6)	intron (NM_001284208, intron 1 of 6)	21149	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
129529	chr2	69696301	69696500	+	0	NA	intron (NM_001320698, intron 2 of 14)	Tigger1|DNA|TcMar-Tigger	-45734	NM_001320702	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
77067	chr15	78885051	78885350	+	0	NA	intron (NM_206839, intron 4 of 12)	intron (NM_206839, intron 4 of 12)	12211	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
92682	chr17	13016221	13016480	+	0	NA	intron (NM_173717, intron 3 of 23)	intron (NM_173717, intron 3 of 23)	1677	NM_018127	60528		NM_018127	ENSG00000006744	ELAC2	COXPD17|ELC2|HPC2	elaC ribonuclease Z 2	protein-coding
75347	chr15	65488471	65488630	+	0	NA	intron (NM_197961, intron 7 of 19)	AluJb|SINE|Alu	28724	NR_135486	54878		NM_017743	ENSG00000074603	DPP8	DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141	dipeptidyl peptidase 8	protein-coding
81603	chr16	10500151	10500480	+	0	NA	Intergenic	Intergenic	27883	NR_149081	106144584		NR_149081	ENSG00000260468	LINC01290	-	long intergenic non-protein coding RNA 1290	ncRNA
56784	chr12	120191001	120191630	+	0	NA	intron (NM_006836, intron 1 of 57)	intron (NM_006836, intron 1 of 57)	3400	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
109068	chr18	79911471	79911950	+	0	NA	intron (NM_001146343, intron 3 of 3)	intron (NM_001146343, intron 3 of 3)	39943	NM_001146343	80148		NM_025078	ENSG00000122490	SLC66A2	PQLC1	solute carrier family 66 member 2	protein-coding
119894	chr19	41551351	41551450	+	0	NA	intron (NM_001288773, intron 1 of 7)	AluSq2|SINE|Alu	1882	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
159814	chr3	16364551	16364880	+	0	NA	intron (NM_015150, intron 6 of 9)	L1ME3A|LINE|L1	99503	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
62060	chr13	92159651	92159750	+	0	NA	intron (NM_004466, intron 7 of 7)	AluY|SINE|Alu	192507	NR_120382	100873970		NR_120382		GPC5-AS2	-	GPC5 antisense RNA 2	ncRNA
76114	chr15	72511401	72511850	+	0	NA	intron (NM_005744, intron 1 of 13)	L1MD3|LINE|L1	37295	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
145035	chr20	38092701	38093350	+	0	NA	TTS (NM_021215)	TTS (NM_021215)	59279	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
106522	chr18	21096801	21097000	+	0	NA	intron (NM_005406, intron 1 of 32)	intron (NM_005406, intron 1 of 32)	14913	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
136288	chr2	174748751	174749450	+	0	NA	intron (NM_001039523, intron 8 of 9)	intron (NM_001039523, intron 8 of 9)	15372	NM_001039523	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
144433	chr20	35453071	35453430	+	0	NA	TTS (NR_031620)	TTS (NR_031620)	847	NR_031620	100302125		NR_031620	ENSG00000221763	MIR1289-1	MIRN1289-1|hsa-mir-1289-1	microRNA 1289-1	ncRNA
167476	chr3	129124501	129125700	+	0	NA	intron (NM_001204890, intron 11 of 12)	AluY|SINE|Alu	-2950	NM_001204883	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
17538	chr1	156787671	156787830	+	0	NA	intron (NM_005973, intron 3 of 6)	AluSc8|SINE|Alu	20215	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
82635	chr16	19069351	19069650	+	0	NA	intron (NM_001370489, intron 1 of 5)	AluSz|SINE|Alu	853	NM_001370491	10229		NM_016138	ENSG00000167186	COQ7	CAT5|CLK-1|CLK1|COQ10D8|HMNR9	coenzyme Q7, hydroxylase	protein-coding
32547	chr10	103265701	103265980	+	0	NA	Intergenic	L3b|LINE|CR1	-11298	NM_032727	9118		NM_032727	ENSG00000148798	INA	NEF5|NF-66|NF66|TXBP-1	internexin neuronal intermediate filament protein alpha	protein-coding
68172	chr14	75981171	75983150	+	0	NA	promoter-TSS (NM_001329938)	promoter-TSS (NM_001329938)	-165	NM_001329938	7043		NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding
112230	chr19	5711601	5711800	+	0	NA	intron (NR_076392, intron 5 of 18)	CpG	8446	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
47143	chr12	751901	753600	+	0	NA	promoter-TSS (NM_213655)	promoter-TSS (NM_213655)	171	NM_018979	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
99190	chr17	49492451	49493730	+	0	NA	Intergenic	Intergenic	-2203	NM_002507	4804		NM_002507	ENSG00000064300	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
72824	chr15	40122801	40123000	+	0	NA	Intergenic	Intergenic	-14021	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
40975	chr11	65376551	65376850	+	0	NA	intron (NR_147972, intron 8 of 8)	intron (NR_147972, intron 8 of 8)	5271	NM_001352384	283130		NM_182556	ENSG00000162241	SLC25A45	-	solute carrier family 25 member 45	protein-coding
103651	chr17	78766571	78767730	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	15058	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
27670	chr10	33098871	33100380	+	0	NA	intron (NR_160030, intron 1 of 2)	AluJr|SINE|Alu	17182	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
226968	chr9	81597151	81597250	+	0	NA	intron (NM_001303104, intron 14 of 19)	MIRb|SINE|MIR	92335	NM_001303104	7088		NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1|TLE-1	TLE family member 1, transcriptional corepressor	protein-coding
118361	chr19	35692101	35692500	+	0	NA	Intergenic	Intergenic	-12258	NM_001316902	27033		NM_014383	ENSG00000011590	ZBTB32	FAXF|FAZF|Rog|TZFP|ZNF538|mynn	zinc finger and BTB domain containing 32	protein-coding
33588	chr10	119509501	119509700	+	0	NA	intron (NM_002925, intron 4 of 4)	intron (NM_002925, intron 4 of 4)	26933	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
238630	chrX	153959471	153960030	+	0	NA	intron (NM_005334, intron 8 of 25)	intron (NM_005334, intron 8 of 25)	-9015	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
42709	chr11	72673601	72674430	+	0	NA	intron (NM_002599, intron 1 of 30)	intron (NM_002599, intron 1 of 30)	407	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
22686	chr1	223839871	223840700	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	5662	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
16561	chr1	154971421	154971930	+	0	NA	promoter-TSS (NM_001130040)	promoter-TSS (NM_001130040)	-928	NM_183001	6464		NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding
210306	chr7	99467571	99467730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1483	NM_001003713	9551		NM_004889	ENSG00000241468	ATP5MF	ATP5J2|ATP5JL	ATP synthase membrane subunit f	protein-coding
161853	chr3	45760971	45761380	+	0	NA	intron (NM_001385683, intron 9 of 10)	intron (NM_001385683, intron 9 of 10)	35361	NM_001385683	54716		NM_020208	ENSG00000163817	SLC6A20	IMINO|SIT1|XT3|Xtrp3	solute carrier family 6 member 20	protein-coding
146636	chr20	50282271	50282430	+	0	NA	Intergenic	Intergenic	-10370	NR_034124	284751		NM_001025463	ENSG00000203999	LINC01270	-	long intergenic non-protein coding RNA 1270	ncRNA
138136	chr2	202302351	202302530	+	0	NA	intron (NM_015934, intron 13 of 14)	MIR|SINE|MIR	9389	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
9013	chr1	44726171	44726600	+	0	NA	TTS (NM_001145636)	TTS (NM_001145636)	-4484	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
93211	chr17	17827271	17827450	+	0	NA	intron (NM_001005291, intron 1 of 19)	intron (NM_001005291, intron 1 of 19)	-3730	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
157924	chr22	49780721	49781030	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	43456	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
99165	chr17	49392201	49392400	+	0	NA	Intergenic	AluSx1|SINE|Alu	22558	NM_001281496	5245		NM_002634	ENSG00000167085	PHB1	HEL-215|HEL-S-54e|PHB	prohibitin 1	protein-coding
33312	chr10	114856151	114857300	+	0	NA	intron (NM_001135051, intron 14 of 16)	intron (NM_001135051, intron 14 of 16)	34945	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
140068	chr2	231429221	231429480	+	0	NA	Intergenic	LTR9B|LTR|ERV1	26586	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
103901	chr17	79806501	79806950	+	0	NA	Intergenic	Intergenic	-9648	NM_020649	57332		NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding
590	chr1	1288251	1288980	+	0	NA	intron (NM_001130413, intron 12 of 17)	CpG-77	7555	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
114198	chr19	11420201	11420600	+	0	NA	TTS (NM_145045)	TTS (NM_145045)	-1086	NM_001035223	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
154118	chr22	31107311	31108780	+	0	NA	promoter-TSS (NM_080430)	promoter-TSS (NM_080430)	-477	NM_080430	140606		NM_080430	ENSG00000198832	SELENOM	SELM|SEPM	selenoprotein M	protein-coding
165725	chr3	104279571	104280000	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	-755669	NR_039611	100616336		NR_039611	ENSG00000265328	MIR548AB	-	microRNA 548ab	ncRNA
118867	chr19	38656551	38657230	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	9241	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
25242	chr10	6044151	6044650	+	0	NA	intron (NM_000417, intron 1 of 7)	MER66B|LTR|ERV1	17967	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
130033	chr2	74413751	74414050	+	0	NA	TTS (NM_001316766)	TTS (NM_001316766)	3817	NM_001145054	388963		NM_001145054	ENSG00000284308	C2orf81	hCG40743	chromosome 2 open reading frame 81	protein-coding
182199	chr5	56826721	56827600	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	11611	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
148342	chr20	63816321	63816580	+	0	NA	intron (NR_110081, intron 1 of 2)	intron (NR_110081, intron 1 of 2)	8374	NR_110081	101928604		NR_110081		ZBTB46-AS1	-	ZBTB46 antisense RNA 1	ncRNA
204765	chr7	5602621	5602880	+	0	NA	intron (NM_003088, intron 1 of 4)	AluJo|SINE|Alu	9934	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
76535	chr15	75153301	75153830	+	0	NA	Intergenic	Intergenic	-48317	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
151508	chr21	46409871	46410230	+	0	NA	intron (NM_006031, intron 27 of 46)	intron (NM_006031, intron 27 of 46)	-48841	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
126179	chr2	26605401	26605780	+	0	NA	intron (NM_001029881, intron 3 of 6)	intron (NM_001029881, intron 3 of 6)	35776	NM_001029881	130106		NM_001029881	ENSG00000157884	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
30009	chr10	73770671	73771080	+	0	NA	intron (NM_198597, intron 22 of 22)	intron (NM_198597, intron 22 of 22)	-1401	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
132335	chr2	105545721	105546150	+	0	NA	Intergenic	Intergenic	64624	NR_038891	285000		NR_038891		LINC02946	RMEL1	long intergenic non-protein coding RNA 2946	ncRNA
101366	chr17	67231401	67231600	+	0	NA	intron (NM_001330447, intron 3 of 32)	AluYj4|SINE|Alu	-13276	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
193210	chr6	29792271	29793650	+	0	NA	non-coding (NR_002139, exon 1 of 1)	non-coding (NR_002139, exon 1 of 1)	113	NR_002139	54435		NM_018985		HCG4	HCG4P10|HCGIV-10|HCGIV.9	HLA complex group 4	ncRNA
123117	chr19	51693821	51694280	+	0	NA	promoter-TSS (NR_108100)	promoter-TSS (NR_108100)	-594	NR_108100	102238594		NR_108100	ENSG00000269959	SPACA6-AS1	LINC01129|SPACA6P-AS	SPACA6 antisense RNA 1	ncRNA
43182	chr11	75402051	75402650	+	0	NA	exon (NM_001260506, exon 4 of 7)	exon (NM_001260506, exon 4 of 7)	1959	NR_000005	6079		NR_000005	ENSG00000206941	SNORD15A	RNU15A|SNORNA|U15A	small nucleolar RNA, C/D box 15A	snoRNA
141927	chr20	1215351	1216050	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-10344	NM_001384357	642636		NM_001136566	ENSG00000244588	RAD21L1	RAD21L|dJ545L17.2	RAD21 cohesin complex component like 1	protein-coding
182042	chr5	55821851	55822230	+	0	NA	Intergenic	CpG	-29317	NM_001242638	133396		NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R|zcytoR17	interleukin 31 receptor A	protein-coding
8397	chr1	40394421	40395230	+	0	NA	intron (NM_001198979, intron 1 of 9)	intron (NM_001198979, intron 1 of 9)	1480	NM_001198979	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
194302	chr6	32794471	32794830	+	0	NA	Intergenic	Intergenic	22352	NM_002120	3112		NM_002120	ENSG00000241106	HLA-DOB	DOB|HLA_DOB	major histocompatibility complex, class II, DO beta	protein-coding
186203	chr5	134290471	134290630	+	0	NA	Intergenic	L2a|LINE|L2	-64477	NM_002715	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
115593	chr19	16031071	16031630	+	0	NA	Intergenic	Intergenic	-2363	NR_024335	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
155513	chr22	38687251	38687550	+	0	NA	3' UTR (NM_001360236, exon 5 of 5)	3' UTR (NM_001360236, exon 5 of 5)	5443	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
55509	chr12	105038371	105038530	+	0	NA	intron (NR_027752, intron 17 of 22)	AluJr|SINE|Alu	46008	NM_001034173	160428		NM_001034173	ENSG00000136010	ALDH1L2	mtFDH	aldehyde dehydrogenase 1 family member L2	protein-coding
51501	chr12	52123001	52123400	+	0	NA	Intergenic	LTR67B|LTR|ERVL	29631	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
89717	chr16	89414471	89414630	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-16368	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109172	chr19	309521	309780	+	0	NA	intron (NM_001346105, intron 9 of 12)	intron (NM_001346105, intron 9 of 12)	-18247	NM_003712	8612		NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding
27409	chr10	31360921	31361180	+	0	NA	TTS (NM_001368169)	TTS (NM_001368169)	38705	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
90800	chr17	2213251	2213350	+	0	NA	intron (NM_001256827, intron 3 of 11)	intron (NM_001256827, intron 3 of 11)	-19378	NR_110888	101927839		NR_110888	ENSG00000225084	LOC101927839	-	uncharacterized LOC101927839	ncRNA
82412	chr16	16232201	16234500	+	0	NA	intron (NM_173614, intron 1 of 30)	intron (NM_173614, intron 1 of 30)	755	NM_173614	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
187097	chr5	140344701	140344900	+	0	NA	intron (NM_001945, intron 2 of 5)	intron (NM_001945, intron 2 of 5)	1803	NM_001945	1839		NM_001945	ENSG00000113070	HBEGF	DTR|DTS|DTSF|HEGFL	heparin binding EGF like growth factor	protein-coding
95246	chr17	35404401	35404600	+	0	NA	Intergenic	Intergenic	28000	NM_018042	55106		NM_018042	ENSG00000172123	SLFN12	SLFN3	schlafen family member 12	protein-coding
94279	chr17	28710621	28713680	+	0	NA	promoter-TSS (NM_001304952)	promoter-TSS (NM_001304952)	-262	NM_152465	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
23427	chr1	228402671	228402830	+	0	NA	intron (NM_145214, intron 1 of 5)	MLT1A0|LTR|ERVL-MaLR	4085	NM_145214	81559		NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
185136	chr5	119306271	119306530	+	0	NA	intron (NM_001077654, intron 1 of 1)	7SLRNA|srpRNA|srpRNA	-26775	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
34909	chr11	399871	400100	+	0	NA	exon (NM_001303029, exon 7 of 14)	exon (NM_001303029, exon 7 of 14)	5776	NM_007183	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
74176	chr15	55404501	55404700	+	0	NA	intron (NR_037923, intron 8 of 15)	intron (NR_037923, intron 8 of 15)	3759	NM_020739	9236		NM_004748	ENSG00000260916	CCPG1	CPR8	cell cycle progression 1	protein-coding
71141	chr14	104983401	104984180	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1998	NM_174891	122616		NM_174891	ENSG00000140104	CLBA1	C14orf79	clathrin binding box of aftiphilin containing 1	protein-coding
75149	chr15	64616551	64616850	+	0	NA	intron (NM_015042, intron 2 of 9)	AluY|SINE|Alu	86581	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
38888	chr11	47393651	47393750	+	0	NA	Intergenic	Intergenic	-7270	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
163287	chr3	50324551	50325430	+	0	NA	TTS (NM_007275)	TTS (NM_007275)	-2140	NM_033158	8692		NM_003773	ENSG00000068001	HYAL2	LUCA2	hyaluronidase 2	protein-coding
134468	chr2	143244771	143245700	+	0	NA	intron (NM_018460, intron 5 of 13)	intron (NM_018460, intron 5 of 13)	115816	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
208298	chr7	66075351	66076930	+	0	NA	intron (NM_001024943, intron 1 of 15)	intron (NM_001024943, intron 1 of 15)	321	NM_001024946	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
90461	chr17	1381271	1381430	+	0	NA	intron (NR_024058, intron 1 of 6)	AluSx1|SINE|Alu	18872	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
57032	chr12	120692271	120692430	+	0	NA	intron (NM_001303627, intron 1 of 4)	intron (NM_001303627, intron 1 of 4)	4040	NM_001303627	9761		NM_014730	ENSG00000110917	MLEC	KIAA0152	malectin	protein-coding
179044	chr4	165257401	165257800	+	0	NA	intron (NM_001161522, intron 3 of 13)	LTR16E2|LTR|ERVL	22423	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
212800	chr7	130223921	130224380	+	0	NA	Intergenic	LTR8B|LTR|ERV1	16290	NM_145268	136263		NM_145268	ENSG00000165120	SSMEM1	C7orf45	serine rich single-pass membrane protein 1	protein-coding
38181	chr11	36361101	36361300	+	0	NA	intron (NM_001160167, intron 1 of 8)	Charlie1b|DNA|hAT-Charlie	-14785	NM_001160168	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
64187	chr14	22986371	22987380	+	0	NA	TTS (NM_001282969)	TTS (NM_001282969)	-4324	NM_032876	84962		NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding
71848	chr15	22229971	22230130	+	0	NA	Intergenic	Intergenic	-4721	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
140172	chr2	231640821	231641280	+	0	NA	Intergenic	Intergenic	48186	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
69049	chr14	91866921	91868450	+	0	NA	promoter-TSS (NM_001128596)	promoter-TSS (NM_001128596)	-149	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
165892	chr3	106213751	106214480	+	0	NA	Intergenic	Intergenic	-344714	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
159081	chr3	12004051	12004750	+	0	NA	promoter-TSS (NM_003178)	promoter-TSS (NM_003178)	12	NM_133625	6854		NM_003178	ENSG00000157152	SYN2	SYNII	synapsin II	protein-coding
185614	chr5	131461051	131461350	+	0	NA	intron (NM_016340, intron 19 of 27)	intron (NM_016340, intron 19 of 27)	174029	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
5443	chr1	25587251	25588030	+	0	NA	Intergenic	Intergenic	-29151	NM_020379	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
134496	chr2	143321751	143322050	+	0	NA	intron (NM_018460, intron 6 of 13)	AluJr|SINE|Alu	192481	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
178232	chr4	143184321	143185640	+	0	NA	promoter-TSS (NR_136203)	promoter-TSS (NR_136203)	63	NM_032557	84640		NM_032557	ENSG00000170185	USP38	HP43.8KD	ubiquitin specific peptidase 38	protein-coding
140404	chr2	233089001	233089400	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	28858	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
179922	chr5	753621	754580	+	0	NA	intron (NM_001351303, intron 6 of 13)	intron (NM_001351303, intron 6 of 13)	30629	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
136794	chr2	181517751	181518280	+	0	NA	intron (NM_000885, intron 17 of 27)	intron (NM_000885, intron 17 of 27)	60629	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
225843	chr9	38064401	38064600	+	0	NA	intron (NM_003028, intron 1 of 5)	intron (NM_003028, intron 1 of 5)	4727	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
100201	chr17	59108401	59108800	+	0	NA	Intergenic	Intergenic	-1720	NM_001353084	4591		NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
193037	chr6	28496171	28496330	+	0	NA	Intergenic	Intergenic	19543	NM_182701	257202		NM_182701	ENSG00000198704	GPX6	GPX5p|GPXP3|GPx-6|GSHPx-6|dJ1186N24|dJ1186N24.1	glutathione peroxidase 6	protein-coding
122556	chr19	49655301	49655500	+	0	NA	intron (NM_021228, intron 9 of 10)	AluSx1|SINE|Alu	-9742	NM_001282519	83596		NM_138639	ENSG00000126453	BCL2L12	-	BCL2 like 12	protein-coding
171933	chr4	876121	876380	+	0	NA	intron (NM_001318134, intron 15 of 24)	intron (NM_001318134, intron 15 of 24)	-50121	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
208266	chr7	65764401	65764600	+	0	NA	TTS (NR_003110)	TTS (NR_003110)	4448	NR_145716	109616962		NR_145716	ENSG00000207062	SNORA15B-1	-	small nucleolar RNA, H/ACA box 15B-1	snoRNA
188890	chr5	159965571	159965750	+	0	NA	intron (NM_000679, intron 1 of 1)	intron (NM_000679, intron 1 of 1)	-43440	NM_001282500	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
50894	chr12	49270971	49271800	+	0	NA	intron (NM_032704, intron 3 of 3)	intron (NM_032704, intron 3 of 3)	6303	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
118438	chr19	35849151	35849450	+	0	NA	exon (NM_004646, exon 7 of 29)	exon (NM_004646, exon 7 of 29)	3204	NM_004646	4868		NM_004646	ENSG00000161270	NPHS1	CNF|NPHN|nephrin	NPHS1 adhesion molecule, nephrin	protein-coding
149080	chr21	15739371	15739530	+	0	NA	intron (NM_001352560, intron 1 of 23)	intron (NM_001352560, intron 1 of 23)	9468	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
237703	chrX	124388221	124388900	+	0	NA	intron (NM_001163279, intron 28 of 31)	intron (NM_001163279, intron 28 of 31)	41997	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
111635	chr19	4171271	4171430	+	0	NA	intron (NM_001271996, intron 8 of 9)	intron (NM_001271996, intron 8 of 9)	10956	NM_001321064	51548		NM_016539	ENSG00000077463	SIRT6	SIR2L6|hSIRT6	sirtuin 6	protein-coding
62325	chr13	99058471	99059050	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	27934	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
180195	chr5	1493801	1494200	+	0	NA	intron (NM_024830, intron 3 of 13)	intron (NM_024830, intron 3 of 13)	16856	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
237954	chrX	132766671	132766830	+	0	NA	intron (NM_001077188, intron 3 of 5)	intron (NM_001077188, intron 3 of 5)	99108	NR_046691	100874102		NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
66280	chr14	61378371	61378780	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	57132	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
167449	chr3	129089271	129089980	+	0	NA	3' UTR (NM_001204883, exon 4 of 4)	3' UTR (NM_001204883, exon 4 of 4)	28846	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
101398	chr17	67374321	67375300	+	0	NA	Intergenic	Intergenic	-2471	NM_012417	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
177812	chr4	123446921	123447350	+	0	NA	Intergenic	Intergenic	47595	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
182924	chr5	70722701	70722900	+	0	NA	intron (NR_146391, intron 1 of 10).3	AluJr|SINE|Alu	3011	NR_146391	653080		NR_146391		GUSBP16	-	GUSB pseudogene 16	pseudo
159200	chr3	12876951	12877050	+	0	NA	TTS (NR_136189)	TTS (NR_136189)	8211	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
185713	chr5	132023921	132024180	+	0	NA	Intergenic	Intergenic	-11982	NM_001205250	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
109404	chr19	675221	675770	+	0	NA	promoter-TSS (NM_005860)	promoter-TSS (NM_005860)	-897	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
218109	chr8	41477271	41477630	+	0	NA	Intergenic	Intergenic	-12946	NM_001362979	51125		NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
200337	chr6	133957701	133958150	+	0	NA	intron (NM_004865, intron 1 of 6)	intron (NM_004865, intron 1 of 6)	4701	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
130339	chr2	84996571	84996930	+	0	NA	intron (NM_020122, intron 1 of 6)	intron (NM_020122, intron 1 of 6)	25589	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
44493	chr11	105202521	105202980	+	0	NA	Intergenic	Intergenic	-62981	NM_021571	59082		NM_021571	ENSG00000255501	CARD18	ICEBERG|UNQ5804|pseudo-ICE	caspase recruitment domain family member 18	protein-coding
62473	chr13	99377201	99377600	+	0	NA	intron (NR_026644, intron 8 of 8)	intron (NR_026644, intron 8 of 8)	21269	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
204839	chr7	5769901	5770100	+	0	NA	intron (NM_001377156, intron 1 of 17)	AluSz|SINE|Alu	11663	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
134837	chr2	148646001	148646830	+	0	NA	intron (NM_015630, intron 1 of 13)	intron (NM_015630, intron 1 of 13)	1664	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
237604	chrX	123968751	123969050	+	0	NA	intron (NM_001282418, intron 2 of 33)	MIRb|SINE|MIR	7194	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
149201	chr21	24287921	24288000	+	0	NA	Intergenic	Intergenic	33417	NR_109963	101927869		NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA
30663	chr10	80487071	80487230	+	0	NA	intron (NM_001351272, intron 2 of 9)	intron (NM_001351272, intron 2 of 9)	18909	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
120628	chr19	45062021	45062680	+	0	NA	intron (NM_001278439, intron 10 of 19)	intron (NM_001278439, intron 10 of 19)	-13277	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
91997	chr17	7442921	7443630	+	0	NA	non-coding (NR_130156, exon 5 of 5)	non-coding (NR_130156, exon 5 of 5)	-1786	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
97844	chr17	44963851	44964550	+	0	NA	intron (NM_006688, intron 1 of 1)	intron (NM_006688, intron 1 of 1)	4103	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
89925	chr16	89722001	89723200	+	0	NA	exon (NM_152287, exon 2 of 11)	exon (NM_152287, exon 2 of 11)	1063	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
45607	chr11	118903021	118903330	+	0	NA	intron (NM_001378214, intron 5 of 8)	intron (NM_001378214, intron 5 of 8)	7367	NM_182557	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
169647	chr3	171446721	171446980	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	13555	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
107252	chr18	41936871	41937130	+	0	NA	Intergenic	Intergenic	-18234	NM_002647	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
9141	chr1	45501351	45501880	+	0	NA	intron (NM_015506, intron 1 of 3)	LTR45C|LTR|ERV1	1315	NM_001330540	25974		NM_015506	ENSG00000132763	MMACHC	cblC	metabolism of cobalamin associated C	protein-coding
117060	chr19	19000421	19000680	+	0	NA	intron (NR_147914, intron 8 of 11)	intron (NR_147914, intron 8 of 11)	32967	NR_147914	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
207561	chr7	44881651	44882130	+	0	NA	promoter-TSS (NR_039801)	promoter-TSS (NR_039801)	-90	NR_039801	100616393		NR_039801	ENSG00000284261	MIR4657	mir-4657	microRNA 4657	ncRNA
181708	chr5	50663451	50663550	+	0	NA	Intergenic	L2|LINE|L2	-2431	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
136693	chr2	181128151	181128780	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	4628	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
210581	chr7	100365101	100366000	+	0	NA	intron (NM_001371931, intron 4 of 4)	AluSx1|SINE|Alu	7547	NM_178238	29990		NM_013440	ENSG00000121716	PILRB	FDFACT1|FDFACT2	paired immunoglobin like type 2 receptor beta	protein-coding
148193	chr20	63551771	63551930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1170	NM_024059	79025		NM_024059	ENSG00000125531	FNDC11	C20orf195	fibronectin type III domain containing 11	protein-coding
100080	chr17	58302701	58302900	+	0	NA	intron (NM_001261835, intron 31 of 31)	intron (NM_001261835, intron 31 of 31)	-21865	NM_000250	4353		NM_000250	ENSG00000005381	MPO	-	myeloperoxidase	protein-coding
192433	chr6	24888921	24889500	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-11845	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
6152	chr1	27397571	27397930	+	0	NA	Intergenic	AluSx|SINE|Alu	5128	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
223192	chr8	143570441	143570850	+	0	NA	exon (NM_001100878, exon 5 of 14).2	exon (NM_001100878, exon 5 of 14).2	2127	NM_001100878	642475		NM_001100878	ENSG00000204839	MROH6	C8orf73	maestro heat like repeat family member 6	protein-coding
187919	chr5	148851601	148851800	+	0	NA	Intergenic	LTR33A|LTR|ERVL	25089	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
28656	chr10	59899971	59900330	+	0	NA	intron (NM_005436, intron 1 of 8)	L2c|LINE|L2	6406	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
57018	chr12	120641201	120642180	+	0	NA	intron (NM_001033677, intron 1 of 5)	intron (NM_001033677, intron 1 of 5)	1071	NM_001033677	9478		NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
184966	chr5	113377851	113378450	+	0	NA	intron (NM_001085377, intron 2 of 18)	intron (NM_001085377, intron 2 of 18)	56839	NM_032028	83942		NM_032028	ENSG00000212122	TSSK1B	FKSG81|SPOGA4|STK22D|TSK1|TSSK1	testis specific serine kinase 1B	protein-coding
173576	chr4	10119521	10120430	+	0	NA	Intergenic	Intergenic	-3176	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
81193	chr16	4483151	4483450	+	0	NA	intron (NM_001286268, intron 1 of 5).2	MER21C|LTR|ERVL	6902	NM_002134	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
7725	chr1	36121101	36121300	+	0	NA	intron (NM_001294347, intron 1 of 3)	AluSx4|SINE|Alu	4022	NM_005202	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
163143	chr3	50142701	50143030	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-12193	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
20213	chr1	193129171	193129530	+	0	NA	intron (NM_024529, intron 2 of 16)	AluSx1|SINE|Alu	-7153	NR_031691	100302163		NR_031691	ENSG00000221680	MIR1278	MIRN1278|hsa-mir-1278|mir-1278	microRNA 1278	ncRNA
82438	chr16	16328601	16329630	+	0	NA	promoter-TSS (NR_106828).2	promoter-TSS (NR_106828).2	-190	NR_107061	102466259		NR_107061	ENSG00000275391	MIR6770-3	hsa-mir-6770-3	microRNA 6770-3	ncRNA
223049	chr8	143374371	143375230	+	0	NA	intron (NM_052924, intron 1 of 14)	intron (NM_052924, intron 1 of 14)	5924	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
104771	chr17	81706471	81706780	+	0	NA	intron (NM_002949, intron 3 of 4)	AluSx3|SINE|Alu	3258	NM_002949	6182		NM_002949	ENSG00000262814	MRPL12	5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12|bL12m	mitochondrial ribosomal protein L12	protein-coding
238270	chrX	149183671	149183850	+	0	NA	Intergenic	L1HS|LINE|L1	321546	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
146276	chr20	49064901	49065650	+	0	NA	intron (NM_001362762, intron 3 of 24)	intron (NM_001362762, intron 3 of 24)	18963	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
134258	chr2	135533051	135533350	+	0	NA	intron (NM_001378107, intron 1 of 26)	FLAM_C|SINE|Alu	1716	NM_001378107	23518		NM_015361	ENSG00000048991	R3HDM1	R3HDM	R3H domain containing 1	protein-coding
151473	chr21	46232951	46233250	+	0	NA	intron (NR_110565, intron 2 of 3)	MER21B|LTR|ERVL	3869	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
133738	chr2	127415871	127416930	+	0	NA	Intergenic	Intergenic	-2027	NM_001375603	5624		NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C, inactivator of coagulation factors Va and VIIIa	protein-coding
112670	chr19	7009151	7009530	+	0	NA	Intergenic	Intergenic	-2925	NR_024372	497049		NM_001011541		MARK2P21	-	MARK2 pseudogene 21	pseudo
135002	chr2	152996171	152996330	+	0	NA	Intergenic	L1P1|LINE|L1	277301	NM_001350068	151188		NM_152522	ENSG00000177917	ARL6IP6	AIP-6|AIP6|PFAAP1	ADP ribosylation factor like GTPase 6 interacting protein 6	protein-coding
159448	chr3	13886501	13886700	+	0	NA	Intergenic	Intergenic	-6529	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
95225	chr17	35257601	35257800	+	0	NA	intron (NM_144975, intron 1 of 4)	intron (NM_144975, intron 1 of 4)	14628	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
212176	chr7	116955671	116956500	+	0	NA	intron (NR_002329, intron 3 of 4)	intron (NR_002329, intron 3 of 4)	-1751	NR_002330	93653		NR_002330	ENSG00000227199	ST7-AS1	ST7AS1|ST7OT1	ST7 antisense RNA 1	ncRNA
60794	chr13	45323751	45324050	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	12547	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
157856	chr22	48910621	48911290	+	0	NA	Intergenic	Intergenic	44185	NR_038944	100128946		NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA
105657	chr18	2575671	2575830	+	0	NA	intron (NM_006101, intron 3 of 16)	AluJb|SINE|Alu	4193	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
235659	chrX	48534021	48534280	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-5469	NM_001348262	4943		NM_002536	ENSG00000068354	TBC1D25	MG81|OATL1	TBC1 domain family member 25	protein-coding
32410	chr10	102448221	102448500	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1457	NR_038938	100505761		NR_038937	ENSG00000269609	C10orf95-AS1	RPARP-AS1	C10orf95 antisense RNA 1	ncRNA
189829	chr5	177085301	177085600	+	0	NA	Intergenic	AluJb|SINE|Alu	-1465	NM_001354984	2264		NM_002011	ENSG00000160867	FGFR4	CD334|JTK2|TKF	fibroblast growth factor receptor 4	protein-coding
229730	chr9	124875521	124876330	+	0	NA	intron (NM_030978, intron 5 of 5)	intron (NM_030978, intron 5 of 5)	13795	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
98652	chr17	47826221	47826680	+	0	NA	intron (NR_037575, intron 4 of 4)	intron (NR_037575, intron 4 of 4)	-4656	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
71557	chr14	106334621	106335230	+	0	NA	Intergenic	Intergenic	47251	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
226533	chr9	72038871	72039700	+	0	NA	Intergenic	Intergenic	21328	NM_001128618	138240		NM_001128618	ENSG00000204669	C9orf57	-	chromosome 9 open reading frame 57	protein-coding
41856	chr11	67167101	67167380	+	0	NA	intron (NM_012308, intron 2 of 20)	intron (NM_012308, intron 2 of 20)	47977	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
131527	chr2	96563851	96564230	+	0	NA	Intergenic	Intergenic	26161	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
201529	chr6	149139821	149140570	+	0	NA	Intergenic	Intergenic	-77729	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
76385	chr15	74618001	74618350	+	0	NA	intron (NM_001130028, intron 1 of 12)	intron (NM_001130028, intron 1 of 12)	2339	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
72220	chr15	30189821	30190300	+	0	NA	Intergenic	Intergenic	-5976	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
221068	chr8	116876471	116877080	+	0	NA	TTS (NR_033886)	TTS (NR_033886)	-1975	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
203435	chr7	351001	353250	+	0	NA	Intergenic	Intergenic	-27300	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
235909	chrX	53076671	53077330	+	0	NA	exon (NM_018969, exon 2 of 2)	exon (NM_018969, exon 2 of 2)	-5367	NM_022117	64061		NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding
105907	chr18	3411751	3412450	+	0	NA	promoter-TSS (NM_001278686)	promoter-TSS (NM_001278686)	91	NM_174886	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
215028	chr7	152417651	152417980	+	0	NA	intron (NM_170606, intron 1 of 58)	AluY|SINE|Alu	18188	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
77023	chr15	78638671	78638830	+	0	NA	intron (NM_000750, intron 1 of 5)	intron (NM_000750, intron 1 of 5)	2460	NM_001256567	1143		NM_000750	ENSG00000117971	CHRNB4	-	cholinergic receptor nicotinic beta 4 subunit	protein-coding
4935	chr1	23954921	23955380	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-4678	NM_017761	55629		NM_017761	ENSG00000189266	PNRC2	-	proline rich nuclear receptor coactivator 2	protein-coding
13703	chr1	116761101	116761300	+	0	NA	intron (NM_001767, intron 3 of 4)	intron (NM_001767, intron 3 of 4)	6770	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
67227	chr14	68953501	68953900	+	0	NA	intron (NM_001130004, intron 1 of 21)	AluSx4|SINE|Alu	25602	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
123942	chr19	55380021	55380400	+	0	NA	intron (NM_001190764, intron 1 of 1)	intron (NM_001190764, intron 1 of 1)	3384	NM_139172	147744		NM_139172	ENSG00000160472	TMEM190	MDAC1	transmembrane protein 190	protein-coding
99600	chr17	50539101	50539430	+	0	NA	promoter-TSS (NR_135675)	promoter-TSS (NR_135675)	-511	NR_135675	105371824		NR_135675	ENSG00000250286	LOC105371824	-	uncharacterized LOC105371824	ncRNA
199205	chr6	111788621	111789230	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-29008	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
63209	chr13	113830471	113830630	+	0	NA	intron (NM_000820, intron 10 of 14)	intron (NM_000820, intron 10 of 14)	14940	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
36016	chr11	2908301	2908880	+	0	NA	intron (NM_001315502, intron 3 of 8)	intron (NM_001315502, intron 3 of 8)	-5015	NR_169304	5003		NM_007105	ENSG00000254827	SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	SLC22A18 antisense RNA	ncRNA
107462	chr18	46757471	46757630	+	0	NA	promoter-TSS (NM_001307987)	promoter-TSS (NM_001307987)	-497	NM_001307987	29906		NM_013305	ENSG00000101638	ST8SIA5	SIAT8-E|SIAT8E|ST8SiaV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding
89946	chr16	89742851	89743650	+	0	NA	intron (NM_001286167, intron 36 of 42)	intron (NM_001286167, intron 36 of 42)	21713	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
123024	chr19	51125571	51125730	+	0	NA	exon (NM_001198558, exon 2 of 7)	exon (NM_001198558, exon 2 of 7)	744	NM_014441	27180		NM_014441	ENSG00000129450	SIGLEC9	CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9	sialic acid binding Ig like lectin 9	protein-coding
3773	chr1	16691501	16691900	+	0	NA	intron (NR_026567, intron 10 of 10)	intron (NR_026567, intron 10 of 10)	10445	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
53415	chr12	64758001	64758200	+	0	NA	intron (NM_002076, intron 1 of 13)	MIR3|SINE|MIR	1306	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
44516	chr11	107576521	107576930	+	0	NA	Intergenic	Intergenic	-10990	NR_165421	91801		NM_138775	ENSG00000137760	ALKBH8	ABH8|MRT71|TRM9|TRMT9|TRMT9A	alkB homolog 8, tRNA methyltransferase	protein-coding
73667	chr15	44727601	44727900	+	0	NA	Intergenic	Intergenic	-1238	NR_125376	100419583		NR_125376		LOC100419583	-	ring finger protein 4 pseudogene	pseudo
110482	chr19	2029851	2030800	+	0	NA	Intergenic	AluSz6|SINE|Alu	-14611	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
74817	chr15	63478201	63478400	+	0	NA	Intergenic	Intergenic	-26211	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
87559	chr16	72007401	72007600	+	0	NA	Intergenic	Intergenic	-1244	NM_001361	1723		NM_001361	ENSG00000102967	DHODH	DHOdehase|POADS|URA1	dihydroorotate dehydrogenase (quinone)	protein-coding
216559	chr8	21905921	21906830	+	0	NA	Intergenic	Intergenic	7315	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
59694	chr13	29559471	29559830	+	0	NA	intron (NM_003045, intron 1 of 12)	Tigger3b|DNA|TcMar-Tigger	36038	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
126667	chr2	29116111	29117480	+	0	NA	intron (NM_024692, intron 1 of 15)	intron (NM_024692, intron 1 of 15)	1380	NM_024692	79745		NM_024692	ENSG00000115295	CLIP4	RSNL2	CAP-Gly domain containing linker protein family member 4	protein-coding
129714	chr2	70871221	70872180	+	0	NA	Intergenic	CpG	-16171	NR_126384	104355141		NR_126384	ENSG00000237751	LINC01143	-	long intergenic non-protein coding RNA 1143	ncRNA
131370	chr2	96205871	96206400	+	0	NA	intron (NM_001385622, intron 1 of 7)	intron (NM_001385622, intron 1 of 7)	-2281	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
131845	chr2	98682751	98683150	+	0	NA	intron (NM_012214, intron 2 of 15)	AluY|SINE|Alu	-19477	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
95672	chr17	38321921	38322600	+	0	NA	exon (NM_001278279, exon 6 of 7)	exon (NM_001278279, exon 6 of 7)	21696	NM_001004334	440435		NM_001004334	ENSG00000277399	GPR179	CSNB1E|GPR158L|GPR158L1	G protein-coupled receptor 179	protein-coding
170288	chr3	184323001	184323650	+	0	NA	intron (NM_198244, intron 11 of 29)	intron (NM_198244, intron 11 of 29)	-2371	NR_003055	692107		NR_003055	ENSG00000212158	SNORD66	HBII-142	small nucleolar RNA, C/D box 66	snoRNA
221096	chr8	117523221	117523750	+	0	NA	intron (NM_080651, intron 1 of 3)	intron (NM_080651, intron 1 of 3)	2772	NM_080651	90390		NM_080651	ENSG00000164758	MED30	MED30S|THRAP6|TRAP25	mediator complex subunit 30	protein-coding
43453	chr11	77992901	77993300	+	0	NA	intron (NM_033547, intron 1 of 22)	intron (NM_033547, intron 1 of 22)	1568	NM_033547	92105		NM_033547	ENSG00000149262	INTS4	INT4|MST093	integrator complex subunit 4	protein-coding
41391	chr11	66007571	66007730	+	0	NA	Intergenic	Intergenic	-4358	NM_001323	1474		NM_001323	ENSG00000175315	CST6	ECTD15	cystatin E/M	protein-coding
45399	chr11	118337451	118337550	+	0	NA	Intergenic	AluSc|SINE|Alu	5205	NM_000732	915		NM_000732	ENSG00000167286	CD3D	CD3-DELTA|CD3DELTA|IMD19|T3D	CD3 delta subunit of T-cell receptor complex	protein-coding
100746	chr17	63942521	63942980	+	0	NA	intron (NM_000334, intron 23 of 23)	intron (NM_000334, intron 23 of 23)	-10419	NM_001329050	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
62346	chr13	99178501	99179630	+	0	NA	Intergenic	AluSz|SINE|Alu	21690	NR_036532	100289373		NR_036531	ENSG00000228889	UBAC2-AS1	-	UBAC2 antisense RNA 1	ncRNA
153215	chr22	23913221	23914430	+	0	NA	intron (NR_003082, intron 4 of 4)	CpG	-14895	NR_038911	284889		NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA
113295	chr19	8557621	8558180	+	0	NA	intron (NM_012335, intron 1 of 27)	intron (NM_012335, intron 1 of 27)	19542	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
137874	chr2	200835871	200836430	+	0	NA	Intergenic	AluJb|SINE|Alu	23764	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
70934	chr14	104399571	104400130	+	0	NA	Intergenic	Intergenic	176266	NR_146611	145195		NR_146611	ENSG00000258913	LINC02691	C14orf144	long intergenic non-protein coding RNA 2691	ncRNA
96497	chr17	40308851	40309400	+	0	NA	promoter-TSS (NM_000964)	promoter-TSS (NM_000964)	-55	NM_000964	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
180350	chr5	6721471	6722750	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	8678	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
184998	chr5	115168471	115168650	+	0	NA	intron (NM_018700, intron 1 of 9)	intron (NM_018700, intron 1 of 9)	1348	NM_001300759	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
18489	chr1	161642471	161643150	+	0	NA	Intergenic	MIR3|SINE|MIR	-10847	NM_000570	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
114647	chr19	13015451	13015750	+	0	NA	intron (NM_001365902, intron 1 of 10)	intron (NM_001365902, intron 1 of 10)	-8372	NM_001271044	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
129613	chr2	70107501	70107900	+	0	NA	Intergenic	AluJo|SINE|Alu	17616	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
9691	chr1	53013521	53014150	+	0	NA	intron (NM_001193599, intron 10 of 14)	intron (NM_001193599, intron 10 of 14)	-1102	NM_001007099	6342		NM_002979	ENSG00000116171	SCP2	NLTP|NSL-TP|SCOX|SCP-2|SCP-CHI|SCP-X|SCPX	sterol carrier protein 2	protein-coding
127484	chr2	42242551	42243080	+	0	NA	intron (NM_019063, intron 1 of 22)	AluJo|SINE|Alu	-72584	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
107575	chr18	48837371	48837950	+	0	NA	intron (NM_014772, intron 10 of 11)	MER5A|DNA|hAT-Charlie	105147	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
23070	chr1	226639451	226640230	+	0	NA	intron (NM_002221, intron 5 of 7)	intron (NM_002221, intron 5 of 7)	35228	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
86751	chr16	67650771	67651450	+	0	NA	intron (NM_001317026, intron 23 of 37)	intron (NM_001317026, intron 23 of 37)	5966	NM_001013838	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
163392	chr3	50503021	50504580	+	0	NA	promoter-TSS (NM_001005505)	promoter-TSS (NM_001005505)	-166	NM_001005505	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
208456	chr7	66980621	66980880	+	0	NA	Intergenic	LOR1a|LTR|ERV1	14836	NM_016038	51119		NM_016038	ENSG00000126524	SBDS	CGI-97|SDO1|SDS|SWDS	SBDS ribosome maturation factor	protein-coding
39863	chr11	62425771	62426180	+	0	NA	Intergenic	AluSx1|SINE|Alu	6942	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
223227	chr8	143605571	143606150	+	0	NA	non-coding (NR_138144, exon 7 of 7).2	non-coding (NR_138144, exon 7 of 7).2	3715	NM_001329866	65263		NM_023078	ENSG00000104524	PYCR3	PYCRL	pyrroline-5-carboxylate reductase 3	protein-coding
25676	chr10	8407151	8407850	+	0	NA	Intergenic	Intergenic	-139195	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
1378	chr1	2531801	2532430	+	0	NA	Intergenic	Intergenic	-1852	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
24649	chr1	246923401	246923900	+	0	NA	intron (NR_136586, intron 1 of 36)	intron (NR_136586, intron 1 of 36)	7708	NM_015446	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
193626	chr6	30772471	30772630	+	0	NA	intron (NR_138037, intron 1 of 3)	L2b|LINE|L2	5725	NR_138037	105375013		NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20	ncRNA
73378	chr15	42550471	42550950	+	0	NA	intron (NM_001130447, intron 1 of 4)	AluYf1|SINE|Alu	1872	NM_001130447	55142		NM_018097	ENSG00000137814	HAUS2	C15orf25|CEP27|HsT17025	HAUS augmin like complex subunit 2	protein-coding
101544	chr17	67994521	67994780	+	0	NA	intron (NM_001382359, intron 1 of 3)	intron (NM_001382359, intron 1 of 3)	-1044	NM_181655	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
149746	chr21	34526521	34526950	+	0	NA	promoter-TSS (NM_203418)	promoter-TSS (NM_203418)	87	NM_203418	1827		NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
238543	chrX	153764951	153765050	+	0	NA	intron (NM_001163257, intron 1 of 36)	intron (NM_001163257, intron 1 of 36)	751	NM_005393	5365		NM_005393	ENSG00000198753	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
223343	chr8	143838571	143839130	+	0	NA	intron (NM_178564, intron 9 of 17)	intron (NM_178564, intron 9 of 17)	-1034	NR_106904	102466748		NR_106904	ENSG00000284142	MIR6845	hsa-mir-6845	microRNA 6845	ncRNA
74034	chr15	52256321	52257400	+	0	NA	intron (NM_018728, intron 10 of 40)	intron (NM_018728, intron 10 of 40)	20340	NR_031670	100302202		NR_031670	ENSG00000221052	MIR1266	MIRN1266|hsa-mir-1266|mir-1266	microRNA 1266	ncRNA
86271	chr16	58505221	58505680	+	0	NA	intron (NM_022910, intron 7 of 15)	intron (NM_022910, intron 7 of 15)	5307	NM_001378344	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
50265	chr12	46266401	46268200	+	0	NA	promoter-TSS (NM_001278389)	promoter-TSS (NM_001278389)	687	NM_001278390	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
98725	chr17	48016251	48016550	+	0	NA	Intergenic	Intergenic	-16482	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
169166	chr3	156668121	156668600	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-6230	NM_015508	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
91862	chr17	7229451	7230150	+	0	NA	intron (NM_004422, intron 5 of 14)	intron (NM_004422, intron 5 of 14)	4717	NM_004422	1856		NM_004422	ENSG00000004975	DVL2	-	dishevelled segment polarity protein 2	protein-coding
102775	chr17	76296821	76297480	+	0	NA	intron (NM_032134, intron 3 of 18)	L1MEc|LINE|L1	10530	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
48666	chr12	10498971	10499530	+	0	NA	Intergenic	L1PA16|LINE|L1	-6643	NM_001357731	255308		NM_001357731	ENSG00000180574	EIF2S3B	EIF2S3L|eIF-2gA|eIF2gA	eukaryotic translation initiation factor 2 subunit gamma B	protein-coding
217047	chr8	23286451	23286800	+	0	NA	Intergenic	Intergenic	-1467	NR_125897	203069		NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
221404	chr8	123517951	123518250	+	0	NA	intron (NM_148177, intron 1 of 5)	MER58A|DNA|hAT-Charlie	14043	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
211451	chr7	105082471	105083850	+	0	NA	intron (NM_182931, intron 13 of 26)	Tigger2|DNA|TcMar-Tigger	68955	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
229398	chr9	121191321	121191800	+	0	NA	intron (NM_016322, intron 3 of 7)	intron (NM_016322, intron 3 of 7)	-9923	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
176033	chr4	82365251	82365980	+	0	NA	intron (NM_001003810, intron 1 of 6)	intron (NM_001003810, intron 1 of 6)	8376	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
30627	chr10	80358851	80359150	+	0	NA	intron (NM_032372, intron 2 of 4)	LTR12C|LTR|ERV1	2219	NM_032372	84332		NM_032372	ENSG00000133665	DYDC2	-	DPY30 domain containing 2	protein-coding
19005	chr1	169584851	169585350	+	0	NA	intron (NM_000130, intron 1 of 24)	intron (NM_000130, intron 1 of 24)	1381	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
50290	chr12	46375171	46375330	+	0	NA	Intergenic	Intergenic	-2477	NM_018976	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
77393	chr15	83064551	83065480	+	0	NA	intron (NM_025238, intron 1 of 7)	intron (NM_025238, intron 1 of 7)	2237	NM_001011885	53339		NM_025238	ENSG00000064726	BTBD1	C15orf1|NS5ATP8	BTB domain containing 1	protein-coding
58942	chr13	19773001	19774230	+	0	NA	intron (NM_001354909, intron 1 of 8)	intron (NM_001354909, intron 1 of 8)	9330	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
195031	chr6	35477951	35478250	+	0	NA	intron (NM_003214, intron 7 of 12)	AluJr|SINE|Alu	7592	NR_106961	102465668		NR_106961	ENSG00000276712	MIR7111	hsa-mir-7111	microRNA 7111	ncRNA
161372	chr3	40584351	40584780	+	0	NA	Intergenic	Intergenic	59605	NM_001098414	285268		NM_198484	ENSG00000172888	ZNF621	-	zinc finger protein 621	protein-coding
222888	chr8	142781101	142781400	+	0	NA	Intergenic	Intergenic	-3378	NM_023946	111188157		NM_023946	ENSG00000284505	LYNX1-SLURP2	-	LYNX1-SLURP2 readthrough	protein-coding
112999	chr19	7900971	7901600	+	0	NA	3' UTR (NM_025061, exon 3 of 3)	3' UTR (NM_025061, exon 3 of 3)	-2592	NM_001297556	5609		NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
195304	chr6	36546951	36548550	+	0	NA	promoter-TSS (NM_001305102)	promoter-TSS (NM_001305102)	-271	NM_001305102	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
152919	chr22	22772801	22773000	+	0	NA	Intergenic	Intergenic	-49876	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
171568	chr3	196947401	196947800	+	0	NA	exon (NM_025163, exon 3 of 3)	exon (NM_025163, exon 3 of 3)	4926	NM_001355243	152217		NM_138487	ENSG00000270170	NCBP2AS2	HIAR|KRASIM|NCBP2-AS2	NCBP2 antisense 2 (head to head)	protein-coding
126305	chr2	27260221	27260580	+	0	NA	intron (NM_001318950, intron 2 of 8)	intron (NM_001318950, intron 2 of 8)	2647	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
80386	chr16	2543171	2543500	+	0	NA	intron (NM_031268, intron 1 of 10)	intron (NM_031268, intron 1 of 10)	5314	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
22298	chr1	212995521	212996150	+	0	NA	intron (NM_144567, intron 8 of 8)	intron (NM_144567, intron 8 of 8)	19674	NM_001300755	90806		NM_144567	ENSG00000174606	ANGEL2	Ccr4d|KIAA0759L	angel homolog 2	protein-coding
120242	chr19	42396451	42397900	+	0	NA	promoter-TSS (NR_126041)	promoter-TSS (NR_126041)	27	NR_073180	100996307		NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
5923	chr1	26852701	26853800	+	0	NA	intron (NM_032283, intron 7 of 7)	intron (NM_032283, intron 7 of 7)	-9899	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
225785	chr9	37481671	37481830	+	0	NA	Intergenic	L3|LINE|CR1	-4185	NM_001282766	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
212149	chr7	116630371	116630530	+	0	NA	intron (NR_165033, intron 2 of 4)	LTR81A|LTR|Gypsy	-15793	NR_120506	100996266		NR_120506		COMETT	COMET|LINC01510	cytosolic oncogenic antisense to MET transcript	ncRNA
45197	chr11	117743451	117743550	+	0	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	53716	NM_020693	57453		NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
21866	chr1	207626451	207626550	+	0	NA	intron (NM_000651, intron 45 of 46)	intron (NM_000651, intron 45 of 46)	-18633	NM_175710	1379		NM_175710	ENSG00000197721	CR1L	-	complement C3b/C4b receptor 1 like	protein-coding
111275	chr19	3548671	3549400	+	0	NA	intron (NM_174983, intron 2 of 9)	MIR|SINE|MIR	8549	NM_001287529	126321		NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501|SLC59B1	major facilitator superfamily domain containing 12	protein-coding
66884	chr14	65100801	65103380	+	0	NA	intron (NM_197957, intron 1 of 3)	CpG	427	NM_002382	4149		NM_002382	ENSG00000125952	MAX	PDMCS|bHLHd4	MYC associated factor X	protein-coding
13226	chr1	112668421	112669300	+	0	NA	intron (NM_006135, intron 8 of 9)	Charlie1b|DNA|hAT-Charlie	-5452	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
146249	chr20	48877271	48877430	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-44361	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
20335	chr1	197772301	197772950	+	0	NA	intron (NM_001300858, intron 2 of 15)	AluJb|SINE|Alu	2855	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
92043	chr17	7495251	7495630	+	0	NA	intron (NM_000937, intron 1 of 29)	intron (NM_000937, intron 1 of 29)	11074	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
223076	chr8	143404171	143404530	+	0	NA	Intergenic	Intergenic	-13329	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
232478	chr9	136242701	136243550	+	0	NA	intron (NM_181701, intron 1 of 11)	MER4D|LTR|ERV1	2687	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
212092	chr7	115680051	115680150	+	0	NA	Intergenic	Intergenic	-98659	NR_145801	109623459		NR_145801	ENSG00000202377	SNORA25B	-	small nucleolar RNA, H/ACA box 25B	snoRNA
237826	chrX	129987871	129988030	+	0	NA	intron (NM_001379450, intron 1 of 13)	intron (NM_001379450, intron 1 of 13)	5315	NM_021946	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
115936	chr19	16635721	16636300	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-7806	NM_004831	9441		NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
133390	chr2	118197271	118197500	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-10999	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
128590	chr2	60927171	60927330	+	0	NA	3' UTR (NM_002908, exon 11 of 11)	3' UTR (NM_002908, exon 11 of 11)	45676	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
178672	chr4	152510601	152511500	+	0	NA	intron (NM_001349798, intron 2 of 13)	FLAM_C|SINE|Alu	-21634	NR_036092	100422896		NR_036092	ENSG00000264678	MIR3140	mir-3140	microRNA 3140	ncRNA
155629	chr22	38882221	38882480	+	0	NA	Intergenic	L2a|LINE|L2	-10134	NM_014292	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
2936	chr1	11805141	11807080	+	0	NA	promoter-TSS (NR_046428)	promoter-TSS (NR_046428)	14	NR_046428	1185		NM_001286	ENSG00000011021	CLCN6	CLC-6|CONRIBA	chloride voltage-gated channel 6	protein-coding
6540	chr1	28582731	28583680	+	0	NA	promoter-TSS (NR_146382)	promoter-TSS (NR_146382)	-222	NR_146382	85028		NR_024127	ENSG00000197989	SNHG12	ASLNC04080|C1orf79|LINC00100|NCRNA00100|PNAS-123	small nucleolar RNA host gene 12	ncRNA
49293	chr12	20668251	20668450	+	0	NA	intron (NM_000921, intron 15 of 15)	L1PA3|LINE|L1	-26982	NM_017435	53919		NM_017435	ENSG00000139155	SLCO1C1	OATP-F|OATP-RP5|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14	solute carrier organic anion transporter family member 1C1	protein-coding
117244	chr19	19434921	19435480	+	0	NA	TTS (NR_030370)	TTS (NR_030370)	137	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
97240	chr17	42962871	42963230	+	0	NA	intron (NM_001261434, intron 2 of 11)	intron (NM_001261434, intron 2 of 11)	1404	NM_001261434	80755		NM_001261434	ENSG00000266967	AARSD1	AlaXp	alanyl-tRNA synthetase domain containing 1	protein-coding
56929	chr12	120452251	120452750	+	0	NA	intron (NM_176818, intron 2 of 3)	AluJo|SINE|Alu	6056	NR_033684	283459		NM_176818	ENSG00000257218	GATC	15E1.2|COXPD42	glutamyl-tRNA amidotransferase subunit C	protein-coding
173549	chr4	10084471	10085350	+	0	NA	intron (NM_017491, intron 8 of 14)	intron (NM_017491, intron 8 of 14)	-6218	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
182856	chr5	69638421	69639150	+	0	NA	TTS (NR_027386)	TTS (NR_027386)	7640	NR_157804	101929599		NR_157804		LOC101929599	-	putative POM121-like protein 1-like pseudogene	pseudo
46574	chr11	128502751	128502930	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	19470	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
10597	chr1	67428571	67429600	+	0	NA	intron (NM_001018067, intron 1 of 7)	intron (NM_001018067, intron 1 of 7)	1317	NM_001018067	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
53632	chr12	68175371	68176400	+	0	NA	Intergenic	Intergenic	-16145	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
105878	chr18	3250651	3251300	+	0	NA	intron (NM_001303047, intron 2 of 4)	L2c|LINE|L2	-1238	NM_001303049	10627		NM_006471	ENSG00000101608	MYL12A	HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B	myosin light chain 12A	protein-coding
34074	chr10	125000421	125000680	+	0	NA	intron (NM_022802, intron 3 of 8)	intron (NM_022802, intron 3 of 8)	5468	NM_001363508	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
143664	chr20	31953601	31953800	+	0	NA	Intergenic	Intergenic	-1654	NM_030815	81572		NM_030815	ENSG00000088356	PDRG1	C20orf126|PDRG	p53 and DNA damage regulated 1	protein-coding
210145	chr7	98231101	98232050	+	0	NA	intron (NM_015395, intron 13 of 25)	intron (NM_015395, intron 13 of 25)	20136	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
198522	chr6	106528071	106528680	+	0	NA	intron (NM_001371242, intron 7 of 21)	intron (NM_001371242, intron 7 of 21)	16520	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
33338	chr10	116765671	116765930	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	-23234	NM_025015	259217		NM_025015	ENSG00000165868	HSPA12A	-	heat shock protein family A (Hsp70) member 12A	protein-coding
32858	chr10	110069621	110070100	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-61479	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
165000	chr3	71360101	71360300	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-55429	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
149779	chr21	34887801	34888400	+	0	NA	5' UTR (NM_001001890, exon 1 of 6)	5' UTR (NM_001001890, exon 1 of 6)	599	NM_001122607	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
146027	chr20	47205671	47205930	+	0	NA	Intergenic	Intergenic	38833	NR_037410	100500814		NR_037410	ENSG00000264901	MIR3616	mir-3616	microRNA 3616	ncRNA
125111	chr2	9760601	9761200	+	0	NA	Intergenic	Intergenic	-82542	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
164894	chr3	71103301	71104100	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	26886	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
142302	chr20	3328451	3329180	+	0	NA	intron (NM_001009984, intron 12 of 36)	(AC)n|Simple_repeat|Simple_repeat	78847	NM_001009984	25943		NM_001009984	ENSG00000088854	DNAAF9	C20orf194	dynein axonemal assembly factor 9	protein-coding
184612	chr5	103562221	103562880	+	0	NA	intron (NM_031438, intron 1 of 6)	intron (NM_031438, intron 1 of 6)	239	NM_031438	83594		NM_031438	ENSG00000112874	NUDT12	-	nudix hydrolase 12	protein-coding
61966	chr13	79405501	79406980	+	0	NA	promoter-TSS (NM_001286632)	promoter-TSS (NM_001286632)	15	NM_001366735	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
23463	chr1	228556411	228557200	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-44517	NM_001287262	100129094		NM_001287262		BTNL10P	BTN4|BTNL10|BUTR1	butyrophilin like 10, pseudogene	pseudo
32151	chr10	101344221	101344700	+	0	NA	Intergenic	AluY|SINE|Alu	-9573	NM_001256856	8945		NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
220927	chr8	108245571	108246350	+	0	NA	intron (NM_001568, intron 1 of 12)	MER44B|DNA|TcMar-Tigger	2757	NM_001568	3646		NM_001568	ENSG00000104408	EIF3E	EIF3-P48|EIF3S6|INT6|eIF3-p46	eukaryotic translation initiation factor 3 subunit E	protein-coding
8286	chr1	40032371	40033350	+	0	NA	Intergenic	AluSx|SINE|Alu	-7380	NM_001350479	10487		NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	cyclase associated actin cytoskeleton regulatory protein 1	protein-coding
26984	chr10	26778521	26778780	+	0	NA	intron (NR_145410, intron 2 of 11)	intron (NR_145410, intron 2 of 11)	80949	NM_014317	23590		NM_014317	ENSG00000148459	PDSS1	COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1	decaprenyl diphosphate synthase subunit 1	protein-coding
170794	chr3	189122051	189122150	+	0	NA	Intergenic	Intergenic	-49871	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
188002	chr5	149539321	149539580	+	0	NA	intron (NM_001892, intron 2 of 9)	AluJo|SINE|Alu	10915	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
169198	chr3	156812651	156812900	+	0	NA	promoter-TSS (NR_003284)	promoter-TSS (NR_003284)	-754	NR_003284	647033		NR_003284		PA2G4P4	PA2G4L1	proliferation-associated 2G4 pseudogene 4	pseudo
98917	chr17	48606651	48607400	+	0	NA	TTS (NR_033201)	TTS (NR_033201)	-2039	NM_018952	3216		NM_018952	ENSG00000108511	HOXB6	HOX2|HOX2B|HU-2|Hox-2.2	homeobox B6	protein-coding
176339	chr4	88280571	88280930	+	0	NA	intron (NM_152542, intron 1 of 6)	AluSg7|SINE|Alu	3811	NM_152542	152926		NM_152542	ENSG00000163644	PPM1K	BCKDH|BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07	protein phosphatase, Mg2+/Mn2+ dependent 1K	protein-coding
30974	chr10	87882671	87882930	+	0	NA	intron (NM_001304717, intron 2 of 9)	intron (NM_001304717, intron 2 of 9)	19175	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
217229	chr8	26572301	26572780	+	0	NA	intron (NM_001197293, intron 1 of 13)	AluSx1|SINE|Alu	-5405	NM_001386	1808		NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding
9849	chr1	54263821	54264080	+	0	NA	intron (NM_145716, intron 5 of 17)	intron (NM_145716, intron 5 of 17)	27507	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
230777	chr9	128918051	128918630	+	0	NA	TTS (NM_001127245)	TTS (NM_001127245)	-2642	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
206421	chr7	32537551	32537650	+	0	NA	intron (NM_015060, intron 1 of 15)	AluSc8|SINE|Alu	42111	NM_015060	23080		NM_015060	ENSG00000105778	AVL9	KIAA0241	AVL9 cell migration associated	protein-coding
100779	chr17	64001851	64002980	+	0	NA	TTS (NM_001099789)	TTS (NM_001099789)	-2516	NR_126169	400612		NR_126169	ENSG00000264954	PRR29-AS1	-	PRR29 antisense RNA 1	ncRNA
229366	chr9	121062171	121062900	+	0	NA	intron (NM_001317163, intron 1 of 40)	intron (NM_001317163, intron 1 of 40)	-12260	NM_001735	727		NM_001735	ENSG00000106804	C5	C5D|C5a|C5b|CPAMD4|ECLZB	complement C5	protein-coding
165281	chr3	75642621	75643330	+	0	NA	Intergenic	LTR43-int|LTR|ERV1	12212	NR_031714	100302212		NR_031714	ENSG00000283894	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
64539	chr14	24442051	24443850	+	0	NA	promoter-TSS (NM_001290293)	promoter-TSS (NM_001290293)	-3	NR_110032	101927045		NR_110032		LOC101927045	-	uncharacterized LOC101927045	ncRNA
17512	chr1	156748071	156749000	+	0	NA	intron (NM_001319186, intron 1 of 5)	intron (NM_001319186, intron 1 of 5)	2758	NM_001319188	3068		NM_004494	ENSG00000143321	HDGF	HMG1L2	heparin binding growth factor	protein-coding
90204	chr17	427451	427750	+	0	NA	Intergenic	Intergenic	-13577	NR_136407	105371430		NR_136407	ENSG00000241525	LOC105371430	-	uncharacterized LOC105371430	ncRNA
153493	chr22	26479301	26480550	+	0	NA	promoter-TSS (NM_152841)	promoter-TSS (NM_152841)	-244	NM_152841	89781		NM_022081	ENSG00000100099	HPS4	BLOC3S2|LE	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding
113413	chr19	9587721	9587980	+	0	NA	Intergenic	LTR10F|LTR|ERV1	-3346	NM_001308269	7675		NM_001008727	ENSG00000197961	ZNF121	D19S204|ZHC32|ZNF20	zinc finger protein 121	protein-coding
166737	chr3	121747401	121747700	+	0	NA	intron (NM_001366282, intron 1 of 21)	L1ME4b|LINE|L1	2191	NM_001366284	2804		NM_004487	ENSG00000173230	GOLGB1	GCP|GCP372|GOLIM1	golgin B1	protein-coding
143763	chr20	32395201	32395400	+	0	NA	intron (NM_015338, intron 3 of 11)	L1MEc|LINE|L1	36235	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
112124	chr19	5600701	5601100	+	0	NA	intron (NM_014649, intron 11 of 20)	intron (NM_014649, intron 11 of 20)	21876	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
65483	chr14	51868671	51868830	+	0	NA	intron (NM_001243774, intron 1 of 2)	intron (NM_001243774, intron 1 of 2)	8138	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
17388	chr1	156607701	156608460	+	0	NA	Intergenic	Intergenic	-6593	NM_015590	54865		NM_015590	ENSG00000160818	GPATCH4	GPATC4	G-patch domain containing 4 (gene/pseudogene)	protein-coding
93799	chr17	20470101	20470480	+	0	NA	Intergenic	Intergenic	-2755	NM_001042685	284194		NM_001042685	ENSG00000170298	LGALS9B	-	galectin 9B	protein-coding
170693	chr3	187804201	187804400	+	0	NA	Intergenic	Intergenic	-58832	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
173988	chr4	26285301	26285500	+	0	NA	intron (NM_001374401, intron 1 of 11)	MLT1F2|LTR|ERVL-MaLR	-34346	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
64768	chr14	34626551	34626650	+	0	NA	intron (NR_159357, intron 2 of 12)	AluY|SINE|Alu	3548	NR_159358	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
83310	chr16	24543221	24543600	+	0	NA	intron (NM_032626, intron 1 of 2)	AluJb|SINE|Alu	3823	NM_032626	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
150915	chr21	44223221	44223480	+	0	NA	3' UTR (NM_001283052, exon 7 of 7)	3' UTR (NM_001283052, exon 7 of 7)	17593	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
110995	chr19	3038371	3038880	+	0	NA	intron (NM_001144761, intron 2 of 19)	L2b|LINE|L2	9010	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
218840	chr8	59630671	59631230	+	0	NA	Intergenic	Intergenic	511740	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
221172	chr8	120124621	120124880	+	0	NA	promoter-TSS (NM_021110)	promoter-TSS (NM_021110)	-352	NM_001384947	7373		NM_021110	ENSG00000187955	COL14A1	UND	collagen type XIV alpha 1 chain	protein-coding
99479	chr17	50170401	50170600	+	0	NA	TTS (NR_024193)	TTS (NR_024193)	1976	NR_024193	373861		NM_194072		H1-9P	H1-9|H1.9|HILS1	H1.9 linker histone, pseudogene	pseudo
7777	chr1	36223251	36225200	+	0	NA	promoter-TSS (NM_001321473)	promoter-TSS (NM_001321473)	-218	NM_001321471	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
218375	chr8	43238551	43238650	+	0	NA	Intergenic	SAR|Satellite|Satellite	-53842	NM_001002920	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
171596	chr3	197224051	197224230	+	0	NA	intron (NM_001204386, intron 4 of 24)	intron (NM_001204386, intron 4 of 24)	-40009	NM_001204388	1739		NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|hdlg	discs large MAGUK scaffold protein 1	protein-coding
41021	chr11	65437501	65438180	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	-6618	NR_030343	693197		NR_030343	ENSG00000283791	MIR612	MIRN612|hsa-mir-612	microRNA 612	ncRNA
179260	chr4	176025921	176026000	+	0	NA	Intergenic	AluY|SINE|Alu	-23269	NM_201592	2823		NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding
45029	chr11	117026751	117027250	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	71428	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
198726	chr6	108258851	108259500	+	0	NA	intron (NM_001300929, intron 1 of 3)	intron (NM_001300929, intron 1 of 3)	1865	NM_001300928	8724		NM_003795	ENSG00000112335	SNX3	Grd19|MCOPS8|SDP3	sorting nexin 3	protein-coding
105950	chr18	3666101	3666700	+	0	NA	intron (NM_001242763, intron 4 of 10)	intron (NM_001242763, intron 4 of 10)	62663	NR_119377	84777		NM_032691		DLGAP1-AS2	DLPAP1-AS2	DLGAP1 antisense RNA 2	ncRNA
102498	chr17	75760771	75761130	+	0	NA	intron (NM_001381985, intron 5 of 8)	AluSg|SINE|Alu	4242	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
144785	chr20	36634121	36634730	+	0	NA	intron (NM_175077, intron 3 of 7)	AluJr|SINE|Alu	11771	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
129155	chr2	66433421	66433780	+	0	NA	promoter-TSS (NR_046438)	promoter-TSS (NR_046438)	-130	NR_046438	730198		NR_046438		MEIS1-AS3	-	MEIS1 antisense RNA 3	ncRNA
152852	chr22	22206351	22206450	+	0	NA	Intergenic	Intergenic	-38386	NM_001303509	7441		NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	V-set pre-B cell surrogate light chain 1	protein-coding
73868	chr15	50338401	50338930	+	0	NA	intron (NM_016654, intron 1 of 8)	AluJb|SINE|Alu	-15509	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
74618	chr15	60651701	60652050	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	-24345	NM_134260	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
203845	chr7	1448871	1449230	+	0	NA	intron (NM_182924, intron 2 of 16)	intron (NM_182924, intron 2 of 16)	10420	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
61282	chr13	50128671	50129470	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	-3529	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
205106	chr7	6829521	6829780	+	0	NA	Intergenic	Intergenic	-3375	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
136310	chr2	174902421	174903130	+	0	NA	intron (NM_001371514, intron 5 of 12)	intron (NM_001371514, intron 5 of 12)	-55220	NM_001206602	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
154134	chr22	31228021	31228280	+	0	NA	intron (NM_005569, intron 2 of 15)	AluSq2|SINE|Alu	15852	NM_005569	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
39425	chr11	60873021	60874430	+	0	NA	exon (NM_207341, exon 9 of 12)	exon (NM_207341, exon 9 of 12)	6183	NM_207341	22917		NM_207341	ENSG00000149506	ZP1	HEL163|OOMD|OOMD1|OZEMA1|ZPB1	zona pellucida glycoprotein 1	protein-coding
203370	chr6	170449951	170450280	+	0	NA	Intergenic	MIRb|SINE|MIR	103192	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
105600	chr18	656751	657050	+	0	NA	promoter-TSS (NM_001071)	promoter-TSS (NM_001071)	-753	NM_001354867	7298		NM_001071	ENSG00000176890	TYMS	DKCD|HST422|TMS|TS	thymidylate synthetase	protein-coding
220174	chr8	95136821	95137150	+	0	NA	intron (NM_024613, intron 1 of 1)	intron (NM_024613, intron 1 of 1)	3200	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
79215	chr16	360521	361100	+	0	NA	Intergenic	CpG	-8087	NM_181050	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
235898	chrX	52989071	52989430	+	0	NA	intron (NM_001242492, intron 1 of 4)	intron (NM_001242492, intron 1 of 4)	6222	NM_001242494	29057		NM_014138	ENSG00000268350	FAM156A	PRO0659|TMEM29	family with sequence similarity 156 member A	protein-coding
187780	chr5	146181951	146183650	+	0	NA	promoter-TSS (NM_001317965)	promoter-TSS (NM_001317965)	-13	NM_016460	51520		NM_016460	ENSG00000133706	LARS1	HSPC192|ILFS1|LARS|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|cLRS|hr025Cl	leucyl-tRNA synthetase 1	protein-coding
23599	chr1	230066271	230069480	+	0	NA	intron (NM_004481, intron 1 of 15)	CpG	637	NR_120373	2590		NM_004481	ENSG00000143641	GALNT2	CDG2T|GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
39373	chr11	59753951	59754600	+	0	NA	Intergenic	Intergenic	-1101	NM_004177	6809		NM_004177	ENSG00000166900	STX3	DIAR12|MVID2|RDMVID|STX3A	syntaxin 3	protein-coding
128023	chr2	47173701	47174100	+	0	NA	5' UTR (NM_001305626, exon 1 of 5)	5' UTR (NM_001305626, exon 1 of 5)	307	NM_001305626	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
73161	chr15	41443451	41443950	+	0	NA	intron (NM_015138, intron 2 of 17)	AluJb|SINE|Alu	26596	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
35759	chr11	2146401	2147030	+	0	NA	TTS (NM_001042376)	TTS (NM_001042376)	2888	NM_001007139	3481		NM_000612	ENSG00000167244	IGF2	C11orf43|GRDF|IGF-II|PP9974|SRS3	insulin like growth factor 2	protein-coding
31751	chr10	97791801	97792500	+	0	NA	Intergenic	Intergenic	-20151	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
114668	chr19	13069751	13070050	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	32958	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
8553	chr1	41281871	41282030	+	0	NA	Intergenic	(ACCCTA)n|Simple_repeat|Simple_repeat	-39644	NM_012236	22955		NM_012236	ENSG00000010803	SCMH1	Scml3	Scm polycomb group protein homolog 1	protein-coding
13514	chr1	114751851	114752730	+	0	NA	intron (NM_001242891, intron 1 of 20)	intron (NM_001242891, intron 1 of 20)	5694	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
232795	chr9	136705601	136705800	+	0	NA	Intergenic	Intergenic	-6872	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
17716	chr1	158893701	158893900	+	0	NA	Intergenic	L1MEc|LINE|L1	-37752	NM_152501	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
206233	chr7	29038451	29038750	+	0	NA	intron (NM_001371256, intron 15 of 16)	intron (NM_001371256, intron 15 of 16)	58633	NR_038965	100506497		NR_038965	ENSG00000272568	CPVL-AS2	-	CPVL antisense RNA 2	ncRNA
192843	chr6	27149371	27149530	+	0	NA	Intergenic	LTR16A|LTR|ERVL	1824	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
233544	chrX	252651	253150	+	0	NA	Intergenic	Intergenic	-23456	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228344	chr9	98993671	98993830	+	0	NA	intron (NM_001855, intron 5 of 41)	intron (NM_001855, intron 5 of 41)	49843	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
57353	chr12	121776171	121777100	+	0	NA	3' UTR (NM_001080825, exon 12 of 12)	3' UTR (NM_001080825, exon 12 of 12)	17053	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
215269	chr7	157007551	157007850	+	0	NA	TTS (NR_147077)	TTS (NR_147077)	1393	NR_147077	105375606		NR_147077	ENSG00000235029	MNX1-AS2	-	MNX1 antisense RNA 2	ncRNA
70250	chr14	101593421	101593680	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	32199	NM_001362	1735		NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	iodothyronine deiodinase 3	protein-coding
190070	chr5	177612301	177612500	+	0	NA	Intergenic	Intergenic	12268	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
29081	chr10	67904251	67904550	+	0	NA	intron (NM_001142498, intron 3 of 7)	AluJb|SINE|Alu	12998	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
221229	chr8	121641321	121641730	+	0	NA	promoter-TSS (NM_005328)	promoter-TSS (NM_005328)	-85	NM_005328	3037		NM_005328	ENSG00000170961	HAS2	-	hyaluronan synthase 2	protein-coding
66419	chr14	61519271	61519430	+	0	NA	intron (NM_006255, intron 10 of 13)	AluJo|SINE|Alu	50844	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
217172	chr8	26301471	26302250	+	0	NA	intron (NM_002717, intron 2 of 9)	Charlie1a|DNA|hAT-Charlie	8644	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
2201	chr1	8660601	8661000	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	156840	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
126648	chr2	28898651	28898750	+	0	NA	intron (NM_015131, intron 1 of 17)	Charlie9|DNA|hAT-Charlie	4033	NM_015131	23160		NM_015131	ENSG00000163811	WDR43	NET12|UTP5	WD repeat domain 43	protein-coding
15822	chr1	151323371	151323530	+	0	NA	intron (NM_001198774, intron 1 of 10)	AluSx1|SINE|Alu	3966	NM_001198774	5298		NM_002651	ENSG00000143393	PI4KB	DFNA87|NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIII|PI4KIIIBETA|PIK4CB	phosphatidylinositol 4-kinase beta	protein-coding
54623	chr12	92601571	92601950	+	0	NA	Intergenic	LTR9|LTR|ERV1	-101083	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
189410	chr5	172776271	172776430	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-5155	NM_004417	1843		NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
96264	chr17	39854721	39855630	+	0	NA	intron (NM_183231, intron 1 of 5)	intron (NM_183231, intron 1 of 5)	9013	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
15993	chr1	151985671	151985830	+	0	NA	intron (NM_002966, intron 2 of 2)	intron (NM_002966, intron 2 of 2)	8109	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
171792	chr4	475671	475830	+	0	NA	intron (NM_133474, intron 1 of 2)	intron (NM_133474, intron 1 of 2)	-1541	NR_002451	79963		NM_024903	ENSG00000293360	ABCA11P	ABCA11|EST1133530	ATP binding cassette subfamily A member 11, pseudogene	pseudo
112977	chr19	7866501	7866730	+	0	NA	Intergenic	Intergenic	7775	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
159838	chr3	16503201	16503700	+	0	NA	intron (NM_015150, intron 1 of 9)	MER5B|DNA|hAT-Charlie	10249	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
47315	chr12	1710171	1710360	+	0	NA	intron (NM_001375365, intron 1 of 7).2	LTR12F|LTR|ERV1	19195	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
230799	chr9	129011271	129011430	+	0	NA	intron (NM_001369915, intron 5 of 10)	intron (NM_001369915, intron 5 of 10)	16981	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
217404	chr8	28361321	28362180	+	0	NA	intron (NM_018660, intron 1 of 9)	intron (NM_018660, intron 1 of 9)	23103	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
100797	chr17	64028771	64029930	+	0	NA	Intergenic	L1M5|LINE|L1	-8716	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
227451	chr9	90762201	90762400	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-39300	NM_001174168	6850		NM_003177	ENSG00000165025	SYK	IMD82|p72-Syk	spleen associated tyrosine kinase	protein-coding
95136	chr17	35048421	35049430	+	0	NA	intron (NR_037713, intron 1 of 6)	MamRTE1|LINE|RTE-BovB	14782	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
201738	chr6	149898121	149898430	+	0	NA	intron (NR_045127, intron 2 of 2)	intron (NR_045127, intron 2 of 2)	-2216	NM_001243328	135250		NM_139165	ENSG00000164520	RAET1E	LETAL|N2DL-4|NKG2DL4|RAET1E2|RL-4|ULBP4|bA350J20.7	retinoic acid early transcript 1E	protein-coding
114940	chr19	13977021	13977580	+	0	NA	intron (NM_002918, intron 8 of 20)	AluSg|SINE|Alu	-23908	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
84409	chr16	30350291	30351630	+	0	NA	3' UTR (NM_001243646, exon 6 of 6)	3' UTR (NM_001243646, exon 6 of 6)	3974	NM_001243646	10421		NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
81016	chr16	4250851	4251150	+	0	NA	intron (NR_039999, intron 2 of 2)	AluSg|SINE|Alu	2789	NR_039999	100507501		NR_039999		LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA
168144	chr3	138948721	138949200	+	0	NA	intron (NM_001040061, intron 1 of 2)	intron (NM_001040061, intron 1 of 2)	1743	NM_001040061	401089		NM_001040061	ENSG00000206262	FOXL2NB	C3orf72	FOXL2 neighbor	protein-coding
199182	chr6	111765751	111766880	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-6398	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
184809	chr5	111241951	111242050	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	17616	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
75239	chr15	64883901	64884730	+	0	NA	Intergenic	Intergenic	-27587	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
80718	chr16	3094371	3095030	+	0	NA	intron (NM_032805, intron 1 of 5)	intron (NM_032805, intron 1 of 5)	4594	NM_001282415	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
71231	chr14	105174271	105175630	+	0	NA	TTS (NM_001318380)	TTS (NM_001318380)	-6174	NM_145159	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
32912	chr10	110205901	110206650	+	0	NA	Intergenic	AluSx|SINE|Alu	-1330	NM_130439	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
88345	chr16	84548651	84550230	+	0	NA	Intergenic	Intergenic	-44781	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
141216	chr2	239382501	239382700	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	18420	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
221047	chr8	116755421	116756350	+	0	NA	promoter-TSS (NM_003756)	promoter-TSS (NM_003756)	-62	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
116493	chr19	18126601	18126800	+	0	NA	intron (NM_015016, intron 10 of 26)	AluJr|SINE|Alu	-26463	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
156413	chr22	41195751	41195930	+	0	NA	intron (NR_110514, intron 1 of 2)	intron (NR_110514, intron 1 of 2)	1661	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
209060	chr7	74767651	74767950	+	0	NA	Intergenic	Intergenic	-6162	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
56205	chr12	111467251	111467430	+	0	NA	intron (NM_002973, intron 20 of 24)	AluJo|SINE|Alu	32478	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
119561	chr19	40622701	40622900	+	0	NA	intron (NM_001042544, intron 26 of 32)	intron (NM_001042544, intron 26 of 32)	21431	NM_001042545	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
194225	chr6	32235051	32235150	+	0	NA	Intergenic	L1MDa|LINE|L1	-11033	NM_004557	4855		NM_004557	ENSG00000204301	NOTCH4	INT3	notch receptor 4	protein-coding
180307	chr5	5486021	5486450	+	0	NA	intron (NM_015325, intron 17 of 18)	Charlie1a|DNA|hAT-Charlie	63558	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
219252	chr8	67310301	67310600	+	0	NA	intron (NM_006421, intron 1 of 38)	SVA_F|Retroposon|SVA	33331	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
148286	chr20	63703471	63703980	+	0	NA	intron (NM_003224, intron 4 of 7)	intron (NM_003224, intron 4 of 7)	-3717	NM_001083113	84619		NM_032527	ENSG00000197114	ZGPAT	GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP	zinc finger CCCH-type and G-patch domain containing	protein-coding
236280	chrX	66042471	66042830	+	0	NA	Intergenic	MIRb|SINE|MIR	-2525	NM_001184830	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
75988	chr15	70556671	70557130	+	0	NA	Intergenic	Intergenic	29706	NR_135691	101929151		NR_135691	ENSG00000280639	LINC02204	-	long intergenic non-protein coding RNA 2204	ncRNA
1603	chr1	3652141	3653500	+	0	NA	intron (NM_001204185, intron 1 of 12)	CpG-291	255	NM_001204187	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
25132	chr10	4080071	4080980	+	0	NA	intron (NR_120632, intron 1 of 3)	MIRb|SINE|MIR	28799	NR_120632								
149797	chr21	34962671	34963100	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-74186	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
159467	chr3	14134721	14134980	+	0	NA	exon (NM_024334, exon 8 of 12)	exon (NM_024334, exon 8 of 12)	9798	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
212238	chr7	121368871	121369030	+	0	NA	intron (NM_001040020, intron 5 of 9)	(TTG)n|Simple_repeat|Simple_repeat	27358	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
158006	chr22	49879101	49879500	+	0	NA	intron (NM_014838, intron 1 of 1)	AluSx|SINE|Alu	25456	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
220402	chr8	100257151	100257250	+	0	NA	3' UTR (NM_001280539, exon 11 of 11)	3' UTR (NM_001280539, exon 11 of 11)	44993	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
38779	chr11	47184801	47185180	+	0	NA	intron (NM_016223, intron 1 of 10)	intron (NM_016223, intron 1 of 10)	891	NM_001184975	29763		NM_016223	ENSG00000165912	PACSIN3	SDPIII	protein kinase C and casein kinase substrate in neurons 3	protein-coding
146138	chr20	48657721	48658730	+	0	NA	exon (NM_020820, exon 17 of 40)	exon (NM_020820, exon 17 of 40)	169774	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
131435	chr2	96302821	96303080	+	0	NA	intron (NM_014014, intron 3 of 44)	MER21B|LTR|ERVL	2596	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
126960	chr2	36184051	36184150	+	0	NA	Intergenic	Intergenic	171470	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
102466	chr17	75722371	75723030	+	0	NA	intron (NM_000213, intron 1 of 39)	intron (NM_000213, intron 1 of 39)	1241	NM_000213	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
28525	chr10	50416471	50416780	+	0	NA	intron (NM_147156, intron 6 of 10)	intron (NM_147156, intron 6 of 10)	-165109	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
138638	chr2	210445171	210445480	+	0	NA	intron (NR_110605, intron 3 of 5)	intron (NR_110605, intron 3 of 5)	31380	NM_001136574	10314		NM_006055	ENSG00000115365	LANCL1	GPR69A|p40	LanC like glutathione S-transferase 1	protein-coding
127275	chr2	38720521	38721130	+	0	NA	intron (NM_138801, intron 4 of 6)	MLT1G3|LTR|ERVL-MaLR	30536	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
157580	chr22	45980371	45980700	+	0	NA	Intergenic	Intergenic	-3373	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
147581	chr20	61253751	61253850	+	0	NA	intron (NM_001794, intron 1 of 15)	CpG	1539	NM_001794	1002		NM_001794	ENSG00000179242	CDH4	CAD4|R-CAD|RCAD	cadherin 4	protein-coding
57634	chr12	122509871	122510030	+	0	NA	intron (NR_036434, intron 8 of 10)	AluSz6|SINE|Alu	-9018	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
236001	chrX	54529571	54531150	+	0	NA	5' UTR (NM_001184819, exon 1 of 16)	5' UTR (NM_001184819, exon 1 of 16)	141	NM_001184819	54552		NM_019067	ENSG00000130119	GNL3L	GNL3B	G protein nucleolar 3 like	protein-coding
160374	chr3	27904271	27904680	+	0	NA	Intergenic	Intergenic	-70339	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
128329	chr2	54673001	54673800	+	0	NA	Intergenic	Intergenic	-51612	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
133529	chr2	120227451	120227950	+	0	NA	Intergenic	Intergenic	-4300	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
203527	chr7	814301	814730	+	0	NA	Intergenic	AluYe5|SINE|Alu	-1042	NM_001171946	23353		NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
3979	chr1	18900301	18900750	+	0	NA	intron (NM_170726, intron 1 of 15)	MER20|DNA|hAT-Charlie	2030	NM_170726	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
154616	chr22	36306051	36306730	+	0	NA	intron (NM_002473, intron 16 of 40)	intron (NM_002473, intron 16 of 40)	-19483	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
114696	chr19	13130551	13131050	+	0	NA	intron (NM_052876, intron 1 of 5)	AluSx|SINE|Alu	12536	NM_052876	112939		NM_052876	ENSG00000160877	NACC1	BEND8|BTBD14B|BTBD30|NAC-1|NAC1|NECFM	nucleus accumbens associated 1	protein-coding
3347	chr1	15445321	15446030	+	0	NA	exon (NM_007272, exon 7 of 8)	exon (NM_007272, exon 7 of 8)	7232	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
30730	chr10	84026851	84026950	+	0	NA	Intergenic	LTR41C|LTR|ERVL	-112609	NM_014394	27069		NM_014394	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
236334	chrX	69503851	69504730	+	0	NA	promoter-TSS (NM_015686)	promoter-TSS (NM_015686)	-36	NM_015686	27112		NM_015686	ENSG00000130054	NALF2	CXorf63|FAM155B|TED|TMEM28|bB57D9.1	NALCN channel auxiliary factor 2	protein-coding
36193	chr11	3380001	3380200	+	0	NA	promoter-TSS (NM_001130519)	promoter-TSS (NM_001130519)	-861	NR_024248	650368		NR_024248	ENSG00000290960	TSSC2	-	tumor suppressing subtransferable candidate 2 (pseudogene)	pseudo
235866	chrX	51336601	51336850	+	0	NA	3' UTR (NM_153183, exon 3 of 3)	3' UTR (NM_153183, exon 3 of 3)	3903	NM_001304963	170685		NM_153183	ENSG00000122824	NUDT10	APS2|DIPP3-alpha|DIPP3a	nudix hydrolase 10	protein-coding
214190	chr7	148427151	148427250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-163566	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
121244	chr19	46660571	46661700	+	0	NA	promoter-TSS (NM_145056)	promoter-TSS (NM_145056)	47	NM_145056	147906		NM_145056	ENSG00000197380	DACT3	DAPPER3|RRR1	dishevelled binding antagonist of beta catenin 3	protein-coding
157669	chr22	46279451	46279550	+	0	NA	intron (NM_017931, intron 6 of 13)	MIRb|SINE|MIR	11492	NM_017931	55020		NM_017931	ENSG00000075234	TTC38	LL22NC03-5H6.5	tetratricopeptide repeat domain 38	protein-coding
84670	chr16	30757351	30757780	+	0	NA	exon (NM_001014979, exon 9 of 9)	exon (NM_001014979, exon 9 of 9)	-4047	NM_001207034	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
197141	chr6	59529671	59530050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1568414	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
38259	chr11	36586671	36586850	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-7733	NM_001276727	119710		NM_138787	ENSG00000166352	IFTAP	C11orf74|HEPIS|NWC	intraflagellar transport associated protein	protein-coding
47233	chr12	981221	981680	+	0	NA	intron (NM_001297419, intron 1 of 11)	MLT1B-int|LTR|ERVL-MaLR	8591	NM_001297419	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
171825	chr4	673971	675380	+	0	NA	promoter-TSS (NR_033743)	promoter-TSS (NR_033743)	133	NM_001363650	4636		NM_002477	ENSG00000215375	MYL5	MYLC2	myosin light chain 5	protein-coding
152780	chr22	21812551	21812650	+	0	NA	intron (NM_138957, intron 1 of 7)	L1M2|LINE|L1	55045	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
150103	chr21	37446551	37447650	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	26801	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
180665	chr5	18740351	18740650	+	0	NA	Intergenic	L2a|LINE|L2	933226	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
46436	chr11	128042071	128043080	+	0	NA	Intergenic	Intergenic	-166191	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
196751	chr6	45426351	45426850	+	0	NA	intron (NM_001278478, intron 1 of 5)	MER131|DNA?|DNA?	4325	NM_001278478	860		NM_001015051	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	RUNX family transcription factor 2	protein-coding
115705	chr19	16209771	16210130	+	0	NA	intron (NM_032493, intron 5 of 11)	L1ME1|LINE|L1	12039	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
32657	chr10	103803951	103804450	+	0	NA	intron (NM_014631, intron 1 of 13)	MER4B|LTR|ERV1	51206	NM_014631	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
66843	chr14	64926271	64926800	+	0	NA	intron (NM_001202559, intron 3 of 13)	intron (NM_001202559, intron 3 of 13)	12080	NM_001202558	100529261		NM_001202558	ENSG00000125954	CHURC1-FNTB	FNTB|FTase-beta	CHURC1-FNTB readthrough	protein-coding
9024	chr1	44753071	44753230	+	0	NA	exon (NM_001297656, exon 5 of 20)	exon (NM_001297656, exon 5 of 20)	6756	NM_001297656	11004		NM_006845	ENSG00000142945	KIF2C	CT139|KNSL6|MCAK	kinesin family member 2C	protein-coding
105422	chr17	82863651	82865450	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-24528	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
44712	chr11	111600971	111601130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1399	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
92084	chr17	7552451	7553950	+	0	NA	intron (NM_172089, intron 5 of 10)	AluSp|SINE|Alu	4142	NR_037146	8742		NM_003809	ENSG00000239697	TNFSF12	APO3L|DR3LG|TNLG4A|TWEAK	TNF superfamily member 12	protein-coding
215137	chr7	155410321	155410580	+	0	NA	Intergenic	Intergenic	28374	NR_147174	100286906		NR_147174		LINC03010	-	long intergenic non-protein coding RNA 3010	ncRNA
175753	chr4	77754751	77755900	+	0	NA	intron (NM_144571, intron 5 of 11)	AluSc8|SINE|Alu	63739	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
187852	chr5	147764851	147764980	+	0	NA	intron (NM_014790, intron 1 of 20)	GA-rich|Low_complexity|Low_complexity	17813	NM_001282282	9832		NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
100542	chr17	62512001	62512430	+	0	NA	intron (NM_001375273, intron 3 of 21)	AluSp|SINE|Alu	31102	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
148663	chr21	6120151	6121800	+	0	NA	intron (NM_173354, intron 13 of 13).2	CpG	9844	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
42030	chr11	67432101	67432300	+	0	NA	intron (NM_003952, intron 5 of 14)	intron (NM_003952, intron 5 of 14)	3706	NM_003952	6199		NM_003952	ENSG00000175634	RPS6KB2	KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb	ribosomal protein S6 kinase B2	protein-coding
136163	chr2	174362021	174362280	+	0	NA	intron (NM_004882, intron 7 of 9)	AluJb|SINE|Alu	27196	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
51597	chr12	52714001	52714980	+	0	NA	Intergenic	CpG	-10966	NM_175078	374454		NM_175078	ENSG00000189182	KRT77	K1B|KRT1B	keratin 77	protein-coding
83049	chr16	22327601	22327800	+	0	NA	intron (NM_018119, intron 18 of 20).2	MIR3|SINE|MIR	30291	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
142781	chr20	13119501	13119750	+	0	NA	intron (NM_018327, intron 8 of 11)	intron (NM_018327, intron 8 of 11)	-101649	NM_080826	140862		NM_080826	ENSG00000101230	ISM1	C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1	isthmin 1	protein-coding
232822	chr9	136726371	136727300	+	0	NA	promoter-TSS (NR_002975)	promoter-TSS (NR_002975)	44	NR_002958	677804		NR_002958	ENSG00000274998	SNORA17A	ACA17|SNORA17	small nucleolar RNA, H/ACA box 17A	snoRNA
217096	chr8	24438801	24439000	+	0	NA	intron (NR_125808, intron 1 of 5)	intron (NR_125808, intron 1 of 5)	-2126	NM_003817	8756		NM_003817	ENSG00000069206	ADAM7	ADAM 7|ADAM-7|EAPI|GP-83|GP83	ADAM metallopeptidase domain 7	protein-coding
111484	chr19	3959671	3960280	+	0	NA	intron (NM_001348, intron 8 of 8)	intron (NM_001348, intron 8 of 8)	1537	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
11265	chr1	89062801	89063350	+	0	NA	exon (NM_002053, exon 2 of 11)	exon (NM_002053, exon 2 of 11)	2133	NM_002053	2633		NM_002053	ENSG00000117228	GBP1	hGBP1	guanylate binding protein 1	protein-coding
226112	chr9	62896951	62897050	+	0	NA	promoter-TSS (NR_126047)	promoter-TSS (NR_126047)	-376	NR_126047	728673		NR_126047	ENSG00000170161	FAM88B	-	family with sequence similarity 88 member B	ncRNA
79333	chr16	576721	578150	+	0	NA	intron (NM_004204, intron 4 of 10)	AluY|SINE|Alu	7467	NM_004204	9091		NM_004204	ENSG00000007541	PIGQ	DEE77|EIEE77|GPI1|GPIBD19|MCAHS4|c407A10.1	phosphatidylinositol glycan anchor biosynthesis class Q	protein-coding
234460	chrX	17737901	17738800	+	0	NA	intron (NM_001037536, intron 1 of 5)	CpG	857	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
185638	chr5	131530651	131531230	+	0	NA	intron (NM_016340, intron 6 of 27)	intron (NM_016340, intron 6 of 27)	104289	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
23825	chr1	234522521	234523080	+	0	NA	Intergenic	Intergenic	8979	NR_038426	100506795		NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA
53176	chr12	59548901	59549180	+	0	NA	Intergenic	L1P3|LINE|L1	-46989	NM_001270623	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
5729	chr1	26412151	26412630	+	0	NA	intron (NM_024674, intron 2 of 3)	intron (NM_024674, intron 2 of 3)	1573	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
8237	chr1	39727221	39727480	+	0	NA	Intergenic	L1ME1|LINE|L1	-11495	NR_036544	10450		NM_006112	ENSG00000084072	PPIE	CYP-33|CYP33|CypE	peptidylprolyl isomerase E	protein-coding
175904	chr4	80171671	80172600	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-13135	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
68999	chr14	91490071	91490430	+	0	NA	intron (NR_158976, intron 3 of 16)	intron (NR_158976, intron 3 of 16)	20060	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
11290	chr1	89259371	89261030	+	0	NA	3' UTR (NM_052942, exon 12 of 12)	3' UTR (NM_052942, exon 12 of 12)	12660	NM_001134486	115362		NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
216385	chr8	17919151	17920030	+	0	NA	Intergenic	Intergenic	-3267	NM_001352660	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
154962	chr22	37265821	37266080	+	0	NA	Intergenic	L2|LINE|L2	-16558	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
112808	chr19	7499601	7500330	+	0	NA	intron (NM_198534, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	2417	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
234791	chrX	24012501	24012700	+	0	NA	intron (NM_030624, intron 2 of 3)	L2|LINE|L2	14586	NM_030624	80311		NM_030624	ENSG00000174010	KLHL15	HEL-S-305|XLID103	kelch like family member 15	protein-coding
148764	chr21	8158551	8158650	+	0	NA	Intergenic	Intergenic	-39020	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
108290	chr18	63315021	63315450	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	4534	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
209119	chr7	74971421	74971730	+	0	NA	intron (NM_001145064, intron 1 of 8)	MLT1L|LTR|ERVL-MaLR	6870	NM_001145064	729438		NM_001145064	ENSG00000274070	CASTOR2	GATSL1|GATSL2	cytosolic arginine sensor for mTORC1 subunit 2	protein-coding
118414	chr19	35766501	35767080	+	0	NA	exon (NM_001367856, exon 8 of 11)	exon (NM_001367856, exon 8 of 11)	8614	NM_001039887	148137		NM_144692	ENSG00000167595	PROSER3	C19orf55	proline and serine rich 3	protein-coding
6997	chr1	31846171	31846530	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-30299	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
158494	chr3	2098571	2098750	+	0	NA	promoter-TSS (NM_001350095)	promoter-TSS (NM_001350095)	-143	NM_001350095	152330		NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
139117	chr2	218983621	218983900	+	0	NA	intron (NM_017521, intron 2 of 2)	intron (NM_017521, intron 2 of 2)	1424	NM_017521	54738		NM_017521	ENSG00000163497	FEV	HSRNAFEV|PET-1	FEV transcription factor, ETS family member	protein-coding
149542	chr21	33036251	33036750	+	0	NA	Intergenic	Intergenic	10565	NM_005806	10215		NM_005806	ENSG00000205927	OLIG2	BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
63717	chr14	21202671	21202980	+	0	NA	non-coding (NR_038970, exon 1 of 1)	non-coding (NR_038970, exon 1 of 1)	2678	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
175654	chr4	76748851	76748950	+	0	NA	intron (NM_020859, intron 5 of 10)	intron (NM_020859, intron 5 of 10)	149244	NM_001029870	345079		NM_001029870	ENSG00000186212	SOWAHB	ANKRD56	sosondowah ankyrin repeat domain family member B	protein-coding
180801	chr5	32304551	32305030	+	0	NA	intron (NM_001294344, intron 1 of 13)	intron (NM_001294344, intron 1 of 13)	8149	NM_001294344	54545		NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding
62508	chr13	99442071	99442580	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	56981	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
30828	chr10	86387301	86387500	+	0	NA	Intergenic	Intergenic	-20605	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
82793	chr16	21461171	21461430	+	0	NA	intron (NR_027155, intron 13 of 28)	intron (NR_027155, intron 13 of 28)	-26845	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
173772	chr4	17447751	17448050	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	64190	NM_000320	5860		NM_000320	ENSG00000151552	QDPR	DHPR|HDHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
37185	chr11	14148701	14148900	+	0	NA	intron (NM_006108, intron 6 of 15)	intron (NM_006108, intron 6 of 15)	186077	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
192221	chr6	18259101	18259630	+	0	NA	intron (NM_003472, intron 2 of 10)	AluY|SINE|Alu	5165	NM_003472	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
70770	chr14	103475851	103476150	+	0	NA	intron (NM_002376, intron 13 of 15)	MLT1A1|LTR|ERVL-MaLR	46830	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
7343	chr1	32753451	32754930	+	0	NA	intron (NM_001369553, intron 1 of 6)	CpG	191	NM_001369553	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
2987	chr1	12014121	12014580	+	0	NA	TTS (NM_001127660)	TTS (NM_001127660)	-5148	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
193388	chr6	30360321	30361130	+	0	NA	Intergenic	L2|LINE|L2	15569	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
78568	chr15	93022401	93022880	+	0	NA	intron (NM_001271, intron 38 of 38)	L1MEc|LINE|L1	50516	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
44224	chr11	96340251	96340550	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-1038	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
237595	chrX	123877851	123878700	+	0	NA	intron (NM_001378590, intron 1 of 6)	L1MB7|LINE|L1	17825	NM_001378590	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
166312	chr3	112674551	112674850	+	0	NA	Intergenic	Intergenic	-33557	NM_199511	151887		NM_178274	ENSG00000091986	CCDC80	CL2|DRO1|LINC01279|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding
78739	chr15	98852071	98852900	+	0	NA	intron (NM_000875, intron 2 of 20)	CpG	68059	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
65444	chr14	51596501	51596900	+	0	NA	intron (NR_047477, intron 1 of 3)	intron (NR_047477, intron 1 of 3)	3252	NR_047477	100874185		NR_047477	ENSG00000258537	FRMD6-AS2	-	FRMD6 antisense RNA 2	ncRNA
24341	chr1	239718701	239720380	+	0	NA	promoter-TSS (NR_103776)	promoter-TSS (NR_103776)	-421	NR_103776	100506915		NR_103776	ENSG00000233355	CHRM3-AS2	-	CHRM3 antisense RNA 2	ncRNA
21376	chr1	205199321	205200000	+	0	NA	intron (NM_015375, intron 1 of 12)	intron (NM_015375, intron 1 of 12)	12042	NM_199462	25778		NM_015375	ENSG00000133059	DSTYK	CAKUT1|DustyPK|HDCMD38P|RHDNS1|RIP5|RIPK5|SPG23	dual serine/threonine and tyrosine protein kinase	protein-coding
196939	chr6	52536651	52536750	+	0	NA	intron (NM_012288, intron 1 of 10)	intron (NM_012288, intron 1 of 10)	40360	NM_012288	9697		NM_012288	ENSG00000065308	TRAM2	-	translocation associated membrane protein 2	protein-coding
30121	chr10	74011571	74011930	+	0	NA	intron (NM_014000, intron 1 of 21)	intron (NM_014000, intron 1 of 21)	13634	NM_003373	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
63925	chr14	21994451	21995150	+	0	NA	Intergenic	Intergenic	-323783	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
218430	chr8	47737201	47738500	+	0	NA	exon (NM_005195, exon 1 of 1)	exon (NM_005195, exon 1 of 1)	314	NM_005195	1052		NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT enhancer binding protein delta	protein-coding
18037	chr1	160605971	160606130	+	0	NA	Intergenic	L1PBa|LINE|L1	-26534	NM_001184882	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
28899	chr10	62924401	62924650	+	0	NA	Intergenic	MER52C|LTR|ERV1	-105358	NM_001136178	1959		NM_000399	ENSG00000122877	EGR2	AT591|CMT1D|CMT4E|KROX20	early growth response 2	protein-coding
147306	chr20	57698071	57698500	+	0	NA	intron (NM_199171, intron 1 of 3)	intron (NM_199171, intron 1 of 3)	-7599	NM_001255976	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
182669	chr5	67294521	67294780	+	0	NA	Intergenic	Intergenic	-97851	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
171547	chr3	196808871	196809230	+	0	NA	intron (NM_002577, intron 7 of 14)	AluJo|SINE|Alu	-58806	NM_001308045	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
18814	chr1	167647101	167647300	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	16968	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
201390	chr6	145734701	145736730	+	0	NA	promoter-TSS (NM_001368129)	promoter-TSS (NM_001368129)	-195	NM_001360057	7957		NM_005670	ENSG00000112425	EPM2A	EPM2|MELF|MELF2	EPM2A glucan phosphatase, laforin	protein-coding
13135	chr1	111656151	111656730	+	0	NA	intron (NM_001010935, intron 2 of 8)	L2|LINE|L2	-8354	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
220620	chr8	100930751	100930850	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	19771	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
91372	chr17	4551201	4551500	+	0	NA	intron (NM_014520, intron 8 of 25)	intron (NM_014520, intron 8 of 25)	4034	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
165057	chr3	71449221	71449600	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	92679	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
182580	chr5	65965371	65965680	+	0	NA	intron (NM_001253697, intron 1 of 25)	AluSz|SINE|Alu	-19952	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
106803	chr18	23942851	23943430	+	0	NA	intron (NM_198129, intron 68 of 74)	intron (NM_198129, intron 68 of 74)	-49747	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
34246	chr10	130189851	130190680	+	0	NA	Intergenic	CpG	53856	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
84521	chr16	30517721	30518180	+	0	NA	intron (NM_002209, intron 28 of 30)	intron (NM_002209, intron 28 of 30)	8616	NM_024671	79724		NM_024671	ENSG00000169957	ZNF768	-	zinc finger protein 768	protein-coding
120126	chr19	42198701	42201030	+	0	NA	intron (NR_073052, intron 2 of 2)	intron (NR_073052, intron 2 of 2)	17812	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
31271	chr10	92243201	92243680	+	0	NA	promoter-TSS (NM_001178137)	promoter-TSS (NM_001178137)	-161	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
35279	chr11	933221	933480	+	0	NA	intron (NR_144509, intron 1 of 20)	intron (NR_144509, intron 1 of 20)	7480	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
217068	chr8	23455951	23456430	+	0	NA	intron (NM_004901, intron 1 of 12)	intron (NM_004901, intron 1 of 12)	1457	NM_004901	9583		NM_004901	ENSG00000197217	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
91901	chr17	7296371	7297130	+	0	NA	Intergenic	Intergenic	-2111	NM_015982	51087		NM_015982	ENSG00000006047	YBX2	CONTRIN|CSDA3|DBPC|MSY2	Y-box binding protein 2	protein-coding
58440	chr12	131963251	131963630	+	0	NA	intron (NM_015409, intron 2 of 52)	intron (NM_015409, intron 2 of 52)	13498	NM_015409	57634		NM_015409	ENSG00000183495	EP400	CAGH32|P400|TNRC12	E1A binding protein p400	protein-coding
207894	chr7	50411271	50411630	+	0	NA	Intergenic	Intergenic	38900	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
95909	chr17	38904351	38904650	+	0	NA	intron (NM_006148, intron 4 of 6)	AluSx|SINE|Alu	-10479	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
26943	chr10	26497151	26497450	+	0	NA	intron (NM_019043, intron 4 of 14)	AluY|SINE|Alu	58959	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
45691	chr11	119056301	119058000	+	0	NA	promoter-TSS (NM_001130991).2	promoter-TSS (NM_001130991).2	55	NM_006389	10525		NM_006389	ENSG00000149428	HYOU1	GRP-170|Grp170|HSP12A|IMD59|ORP-150|ORP150	hypoxia up-regulated 1	protein-coding
41699	chr11	66642251	66642350	+	0	NA	intron (NM_001198844, intron 2 of 2)	intron (NM_001198844, intron 2 of 2)	3597	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
200088	chr6	130182051	130182350	+	0	NA	intron (NM_001258275, intron 9 of 13)	intron (NM_001258275, intron 9 of 13)	33685	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
79654	chr16	1194421	1195330	+	0	NA	intron (NM_021098, intron 2 of 34)	CpG	30393	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
176682	chr4	100679951	100680050	+	0	NA	Intergenic	L2b|LINE|L2	-4887	NR_046811	100874275		NR_046811	ENSG00000250223	LINC01216	EMCN-IT3	long intergenic non-protein coding RNA 1216	ncRNA
116215	chr19	17509371	17509730	+	0	NA	intron (NR_147835, intron 1 of 2)	AluSx|SINE|Alu	-2099	NM_012088	25796		NM_012088	ENSG00000130313	PGLS	6PGL|HEL-S-304	6-phosphogluconolactonase	protein-coding
156295	chr22	40509751	40510050	+	0	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-11900	NR_109965	101927257		NR_109965	ENSG00000232564	MRTFA-AS1	-	MRTFA antisense RNA 1	ncRNA
31470	chr10	96513431	96514350	+	0	NA	promoter-TSS (NM_012465)	promoter-TSS (NM_012465)	36	NM_012465	7093		NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding
159929	chr3	17025501	17025950	+	0	NA	intron (NM_015184, intron 3 of 5)	intron (NM_015184, intron 3 of 5)	92529	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
115442	chr19	15323451	15324130	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	8749	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
119636	chr19	40802051	40803090	+	0	NA	intron (NM_053046, intron 2 of 5)	Charlie4z|DNA|hAT-Charlie	3048	NM_053046	112398		NM_017555	ENSG00000269858	EGLN2	EIT-6|EIT6|HIF-PH1|HIFPH1|HPH-1|HPH-3|PHD1	egl-9 family hypoxia inducible factor 2	protein-coding
4618	chr1	22101271	22101430	+	0	NA	TTS (NM_001039802)	TTS (NM_001039802)	41747	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
188069	chr5	150067071	150067600	+	0	NA	intron (NR_164679, intron 10 of 19)	MIRb|SINE|MIR	19219	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
194574	chr6	33416551	33417000	+	0	NA	TTS (NR_027692).2	TTS (NR_027692).2	1332	NM_001014838	51596		NM_015921	ENSG00000112514	CUTA	ACHAP|C6orf82	cutA divalent cation tolerance homolog	protein-coding
158239	chr22	50293771	50294530	+	0	NA	intron (NM_001376869, intron 1 of 35)	intron (NM_001376869, intron 1 of 35)	6185	NM_001376883	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
187956	chr5	149346301	149347350	+	0	NA	intron (NM_152407, intron 1 of 3)	AluYc|SINE|Alu	1326	NM_152407	134266		NM_152407	ENSG00000164284	GRPEL2	Mt-GrpE#2	GrpE like 2, mitochondrial	protein-coding
219130	chr8	66057701	66057930	+	0	NA	non-coding (NR_146171, exon 4 of 7)	non-coding (NR_146171, exon 4 of 7)	36262	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
176557	chr4	98592521	98592600	+	0	NA	intron (NM_005723, intron 1 of 7)	L1HS|LINE|L1	66051	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
65055	chr14	39269951	39270530	+	0	NA	intron (NM_203355, intron 1 of 22)	AluSc|SINE|Alu	2855	NM_001354144	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
49783	chr12	31893001	31893400	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-5997	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
163941	chr3	52770321	52771380	+	0	NA	promoter-TSS (NM_001193533)	promoter-TSS (NM_001193533)	90	NM_001348413	6787		NM_003157	ENSG00000114904	NEK4	NRK2|STK2|pp12301	NIMA related kinase 4	protein-coding
232926	chr9	136888301	136889130	+	0	NA	intron (NM_021138, intron 1 of 10)	intron (NM_021138, intron 1 of 10)	1982	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA
10967	chr1	84234251	84234450	+	0	NA	intron (NM_002731, intron 9 of 9)	L1PA3|LINE|L1	52718	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
58241	chr12	128745721	128746700	+	0	NA	Intergenic	Intergenic	77748	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
22123	chr1	211739891	211740730	+	0	NA	Intergenic	Intergenic	64548	NR_148994	91548		NR_148994	ENSG00000231057	NEK2-DT	-	NEK2 divergent transcript	ncRNA
236015	chrX	54920771	54921000	+	0	NA	promoter-TSS (NR_073148)	promoter-TSS (NR_073148)	61	NM_001271184	7216		NM_016157	ENSG00000067445	TRO	MAGE-d3|MAGED3	trophinin	protein-coding
86301	chr16	58638201	58638450	+	0	NA	Intergenic	AluSg|SINE|Alu	-8499	NR_049763	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
13634	chr1	116436001	116436650	+	0	NA	intron (NR_125972, intron 2 of 3)	L1MD1|LINE|L1	-17703	NR_027646	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
23747	chr1	232627621	232628230	+	0	NA	intron (NM_001377488, intron 1 of 21)	intron (NM_001377488, intron 1 of 21)	2208	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
142369	chr20	3794351	3794650	+	0	NA	intron (NM_001287517, intron 1 of 15)	intron (NM_001287517, intron 1 of 15)	-1239	NM_001287520	994		NM_004358	ENSG00000101224	CDC25B	-	cell division cycle 25B	protein-coding
143257	chr20	25076571	25077180	+	0	NA	intron (NR_165181, intron 4 of 6)	intron (NR_165181, intron 4 of 6)	1177	NR_165183	30813		NM_014588	ENSG00000100987	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
103075	chr17	77317171	77317530	+	0	NA	intron (NM_001113491, intron 2 of 11)	MER1A|DNA|hAT-Charlie	-2165	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
110522	chr19	2073521	2073780	+	0	NA	intron (NM_130807, intron 4 of 4)	MER58A|DNA|hAT-Charlie	-22406	NM_017572	2872		NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAPK interacting serine/threonine kinase 2	protein-coding
187606	chr5	142946571	142947130	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-77940	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
175248	chr4	60836751	60836850	+	0	NA	Intergenic	L1PA3|LINE|L1	-85819	NR_039652	100616450		NR_039652	ENSG00000265829	MIR548AG1	-	microRNA 548ag-1	ncRNA
137268	chr2	194465301	194465900	+	0	NA	Intergenic	Intergenic	121331	NR_110222	101927406		NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
86972	chr16	68150721	68151180	+	0	NA	intron (NM_173165, intron 3 of 9)	THE1D|LTR|ERVL-MaLR	65580	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
144737	chr20	36585001	36585200	+	0	NA	intron (NM_001199535, intron 2 of 4)	AluSp|SINE|Alu	10546	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
105786	chr18	2881401	2882200	+	0	NA	intron (NM_032048, intron 2 of 7)	intron (NM_032048, intron 2 of 7)	34794	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
80003	chr16	1913001	1913650	+	0	NA	intron (NM_001009606, intron 1 of 1)	intron (NM_001009606, intron 1 of 1)	5090	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
79155	chr16	276721	277180	+	0	NA	Intergenic	Intergenic	-1006	NM_001286485	8786		NM_003834	ENSG00000076344	RGS11	RS11	regulator of G protein signaling 11	protein-coding
206306	chr7	30162251	30162950	+	0	NA	3' UTR (NM_152793, exon 3 of 3)	3' UTR (NM_152793, exon 3 of 3)	27614	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
135110	chr2	157408251	157408650	+	0	NA	Intergenic	L1MC3|LINE|L1	-27941	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
154866	chr22	37131951	37132050	+	0	NA	intron (NM_000878, intron 9 of 9)	AluSg|SINE|Alu	17916	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
213792	chr7	140896021	140896280	+	0	NA	intron (NM_001374244, intron 1 of 18)	L1M2|LINE|L1	28118	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
97057	chr17	42363601	42364300	+	0	NA	intron (NM_001369516, intron 1 of 23)	intron (NM_001369516, intron 1 of 23)	24492	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
26813	chr10	23511551	23511650	+	0	NA	Intergenic	L1PA3|LINE|L1	72525	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
235616	chrX	48003271	48004350	+	0	NA	promoter-TSS (NM_205856)	promoter-TSS (NM_205856)	179	NM_001007088	7569		NM_006962	ENSG00000147118	ZNF182	HHZ150|KOX14|ZNF21|Zfp182	zinc finger protein 182	protein-coding
22788	chr1	224430171	224431830	+	0	NA	intron (NM_001115113, intron 3 of 13)	intron (NM_001115113, intron 3 of 13)	-3640	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
227988	chr9	95491601	95492200	+	0	NA	intron (NM_001354919, intron 2 of 4)	Tigger4|DNA|TcMar-Tigger	15299	NM_001083607	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
117899	chr19	32720601	32720800	+	0	NA	intron (NM_001366102, intron 1 of 32)	(CCCACC)n|Simple_repeat|Simple_repeat	933	NM_001366102	91646		NM_001015890	ENSG00000173809	TDRD12	ECAT8	tudor domain containing 12	protein-coding
37684	chr11	27506251	27507600	+	0	NA	promoter-TSS (NR_033312)	promoter-TSS (NR_033312)	73	NR_002832	497258		NR_002832	ENSG00000245573	BDNF-AS	ANTI-BDNF|BDNF|BDNF-AS1|BDNFAS|BDNFOS|NCRNA00049	BDNF antisense RNA	ncRNA
157819	chr22	47170671	47170830	+	0	NA	intron (NM_001284305, intron 12 of 12)	intron (NM_001284305, intron 12 of 12)	-174821	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
74769	chr15	63243871	63244250	+	0	NA	intron (NM_016530, intron 1 of 7)	MSTD|LTR|ERVL-MaLR	-33490	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
1945	chr1	6551301	6551530	+	0	NA	intron (NM_024654, intron 1 of 11)	AluSz6|SINE|Alu	3098	NM_024654	79707		NM_024654	ENSG00000162408	NOL9	Grc3|NET6	nucleolar protein 9	protein-coding
49821	chr12	32060471	32060880	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-46132	NM_001363603	636		NM_001714	ENSG00000151746	BICD1	BICD|bic-D 1	BICD cargo adaptor 1	protein-coding
14067	chr1	120797221	120797480	+	0	NA	Intergenic	Intergenic	-8206	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
8561	chr1	41355551	41356000	+	0	NA	Intergenic	Intergenic	-5659	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
198995	chr6	110929971	110930330	+	0	NA	Intergenic	Intergenic	-28556	NM_138408	112495		NM_138408	ENSG00000155115	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC subunit 6	protein-coding
70110	chr14	100239701	100240830	+	0	NA	intron (NM_003403, intron 1 of 4)	CpG-7627	1121	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
50780	chr12	49038751	49038850	+	0	NA	exon (NM_003482, exon 35 of 55)	exon (NM_003482, exon 35 of 55)	-20024	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
91523	chr17	4971721	4972180	+	0	NA	intron (NM_001171166, intron 15 of 20)	AluSz6|SINE|Alu	-1800	NR_106925	102465522		NR_106925	ENSG00000278517	MIR6865	hsa-mir-6865	microRNA 6865	ncRNA
230508	chr9	128273401	128273800	+	0	NA	intron (NM_001366246, intron 2 of 25)	MIRb|SINE|MIR	-1756	NM_001379267	375757		NM_001040011	ENSG00000175854	SWI5	C9orf119|SAE3	SWI5 homologous recombination repair protein	protein-coding
18944	chr1	168519651	168520820	+	0	NA	Intergenic	Intergenic	23762	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
199354	chr6	116010851	116011600	+	0	NA	intron (NM_002031, intron 1 of 7)	intron (NM_002031, intron 1 of 7)	-27506	NR_027338	728402		NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
146894	chr20	51529321	51530300	+	0	NA	intron (NM_001258292, intron 1 of 9)	MER113|DNA|hAT-Charlie	12909	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
84903	chr16	31211071	31211230	+	0	NA	Intergenic	LTR68|LTR|ERV1	-2969	NM_001008274	493829		NM_001008274	ENSG00000177238	TRIM72	MG53	tripartite motif containing 72	protein-coding
222776	chr8	141981921	141982830	+	0	NA	Intergenic	Intergenic	-193964	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
49128	chr12	14886601	14886800	+	0	NA	promoter-TSS (NM_000900)	promoter-TSS (NM_000900)	-846	NM_001190839	4256		NM_000900	ENSG00000111341	MGP	GIG36|MGLAP|NTI	matrix Gla protein	protein-coding
164027	chr3	53251621	53252780	+	0	NA	intron (NM_001064, intron 1 of 13)	intron (NM_001064, intron 1 of 13)	3822	NM_001064	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
127524	chr2	42312401	42313080	+	0	NA	intron (NM_019063, intron 17 of 22)	AluSc8|SINE|Alu	47298	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
74538	chr15	60499201	60499400	+	0	NA	intron (NM_134260, intron 11 of 11)	AluJr4|SINE|Alu	20122	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
104452	chr17	81099301	81099780	+	0	NA	intron (NM_001385159, intron 1 of 8)	intron (NM_001385159, intron 1 of 8)	1929	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
46103	chr11	122872021	122872280	+	0	NA	3' UTR (NM_001304782, exon 5 of 5)	3' UTR (NM_001304782, exon 5 of 5)	9819	NM_001304782	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
57514	chr12	122120771	122121300	+	0	NA	intron (NM_014938, intron 1 of 16)	AluSc|SINE|Alu	42279	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
216516	chr8	20376201	20376560	+	0	NA	Intergenic	Intergenic	-72417	NM_021020	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
53716	chr12	68614471	68614950	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	3811	NM_001251922	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
73186	chr15	41503701	41503900	+	0	NA	TTS (NM_002220)	TTS (NM_002220)	9926	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
154898	chr22	37165971	37167200	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	8471	NM_001346223	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
114818	chr19	13811321	13811580	+	0	NA	intron (NM_023072, intron 5 of 12)	AluJb|SINE|Alu	16007	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
11491	chr1	90831721	90832130	+	0	NA	non-coding (NR_147930, exon 2 of 2)	non-coding (NR_147930, exon 2 of 2)	4236	NR_147932	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
15499	chr1	150461971	150462130	+	0	NA	intron (NM_015203, intron 9 of 10)	AluSx|SINE|Alu	-25369	NM_025150	80222		NM_025150	ENSG00000143374	TARS2	COXPD21|TARSL1|thrRS	threonyl-tRNA synthetase 2, mitochondrial	protein-coding
11805	chr1	92786501	92786700	+	0	NA	intron (NM_005665, intron 1 of 17)	L2b|LINE|L2	-1492	NM_001377211	7813		NM_005665	ENSG00000067208	EVI5	EVI-5|NB4S	ecotropic viral integration site 5	protein-coding
4970	chr1	24183721	24184180	+	0	NA	intron (NM_173065, intron 1 of 5)	AluSx|SINE|Alu	3339	NM_173064	163702		NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	interferon lambda receptor 1	protein-coding
12833	chr1	110049801	110050100	+	0	NA	intron (NR_073071, intron 18 of 21)	intron (NR_073071, intron 18 of 21)	15326	NM_033088	85369		NM_033088	ENSG00000143093	STRIP1	FAM40A|FAR11A	striatin interacting protein 1	protein-coding
13353	chr1	113859421	113860180	+	0	NA	intron (NM_012411, intron 1 of 18)	intron (NM_012411, intron 1 of 18)	3165	NR_037864	100287722		NR_037864	ENSG00000226167	AP4B1-AS1	-	AP4B1 antisense RNA 1	ncRNA
121877	chr19	48326001	48327050	+	0	NA	intron (NM_001313905, intron 1 of 4)	AluSx|SINE|Alu	526	NM_001313905	2014		NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3 (MAM blood group)	protein-coding
69680	chr14	98143771	98144130	+	0	NA	Intergenic	Intergenic	-165826	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
216831	chr8	22585951	22586250	+	0	NA	intron (NM_198042, intron 5 of 7)	intron (NM_198042, intron 5 of 7)	5625	NM_001368120	64236		NM_021630	ENSG00000120913	PDLIM2	MYSTIQUE|SLIM	PDZ and LIM domain 2	protein-coding
93289	chr17	18139851	18140230	+	0	NA	intron (NM_016239, intron 18 of 64)	intron (NM_016239, intron 18 of 64)	-22479	NR_164159	105371566		NR_164159		LOC105371566	-	uncharacterized LOC105371566	ncRNA
160823	chr3	33051671	33052030	+	0	NA	intron (NM_000404, intron 8 of 15)	intron (NM_000404, intron 8 of 15)	44982	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
235134	chrX	41084321	41087080	+	0	NA	5' UTR (NM_001039591, exon 1 of 45)	5' UTR (NM_001039591, exon 1 of 45)	255	NM_001039590	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
90	chr1	354301	354700	+	0	NA	Intergenic	Intergenic	97178	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
99062	chr17	48939721	48939980	+	0	NA	intron (NM_001317194, intron 3 of 9)	AluSz6|SINE|Alu	4992	NR_133679	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
109365	chr19	636601	636800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3163	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
66913	chr14	65303601	65304580	+	0	NA	Intergenic	Intergenic	31093	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
63177	chr13	113728951	113729200	+	0	NA	intron (NM_002929, intron 4 of 6)	intron (NM_002929, intron 4 of 6)	22014	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
93938	chr17	21314301	21314780	+	0	NA	3' UTR (NM_002756, exon 12 of 12)	3' UTR (NM_002756, exon 12 of 12)	26504	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
123391	chr19	53921251	53921550	+	0	NA	intron (NM_001384801, intron 4 of 4)	intron (NM_001384801, intron 4 of 4)	12122	NM_031896	59284		NM_031896	ENSG00000105605	CACNG7	-	calcium voltage-gated channel auxiliary subunit gamma 7	protein-coding
138591	chr2	208034021	208034380	+	0	NA	Intergenic	LTR8B|LTR|ERV1	-8673	NM_001080475	389072		NM_001080475	ENSG00000178385	PLEKHM3	DAPR|PLEKHM1L	pleckstrin homology domain containing M3	protein-coding
617	chr1	1319101	1319730	+	0	NA	exon (NM_017871, exon 4 of 17)	exon (NM_017871, exon 4 of 17)	5245	NM_001256463	54973		NM_017871	ENSG00000127054	INTS11	CPSF3L|CPSF73L|INT11|NEDMLOB|PSF3L|RC-68|RC68	integrator complex subunit 11	protein-coding
164249	chr3	57166521	57166830	+	0	NA	intron (NM_001318864, intron 2 of 13)	intron (NM_001318864, intron 2 of 13)	-1322	NM_017563	54756		NM_017563	ENSG00000144730	IL17RD	HH18|IL-17RD|IL17RLM|SEF	interleukin 17 receptor D	protein-coding
8008	chr1	38007251	38007700	+	0	NA	Intergenic	Intergenic	-1961	NM_001243878	2275		NM_004468	ENSG00000183386	FHL3	SLIM2	four and a half LIM domains 3	protein-coding
145338	chr20	41127871	41128030	+	0	NA	intron (NR_109889, intron 4 of 6)	L1MC5|LINE|L1	-9593	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
174723	chr4	42656601	42658430	+	0	NA	promoter-TSS (NM_006095)	promoter-TSS (NM_006095)	-410	NM_001105529	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
82244	chr16	15057601	15057800	+	0	NA	intron (NM_001324020, intron 16 of 16)	intron (NM_001324020, intron 16 of 16)	-1621	NM_001270766	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
80669	chr16	3020801	3021300	+	0	NA	intron (NM_016639, intron 1 of 3)	CpG	682	NM_016639	51330		NM_016639	ENSG00000006327	TNFRSF12A	CD266|FN14|TWEAKR	TNF receptor superfamily member 12A	protein-coding
61596	chr13	73058521	73060030	+	0	NA	5' UTR (NM_001730, exon 1 of 4)	5' UTR (NM_001730, exon 1 of 4)	270	NM_001730	688		NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	KLF transcription factor 5	protein-coding
42541	chr11	71608001	71608400	+	0	NA	Intergenic	CpG	-25325	NM_001005405	440051		NM_001005405	ENSG00000204571	KRTAP5-11	KRTAP5-5|KRTAP5-6|KRTAP5.11	keratin associated protein 5-11	protein-coding
44172	chr11	96232471	96232750	+	0	NA	intron (NM_032427, intron 1 of 4)	AluY|SINE|Alu	-108828	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
62192	chr13	97630971	97631330	+	0	NA	Intergenic	Intergenic	196981	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
169050	chr3	153166121	153166780	+	0	NA	3' UTR (NM_002886, exon 1 of 1)	3' UTR (NM_002886, exon 1 of 1)	4224	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
159194	chr3	12872071	12872800	+	0	NA	Intergenic	Intergenic	12776	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
119114	chr19	39340251	39340350	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2121	NM_001384587	55095		NM_018028	ENSG00000179134	SAMD4B	SMGB|Smaug2	sterile alpha motif domain containing 4B	protein-coding
208419	chr7	66751951	66752250	+	0	NA	intron (NM_001367749, intron 1 of 4)	AluJo|SINE|Alu	-3782	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
138417	chr2	205130421	205130680	+	0	NA	intron (NM_152526, intron 10 of 21)	(ATGTGC)n|Simple_repeat|Simple_repeat	-551950	NM_201264	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
191741	chr6	13762501	13763100	+	0	NA	Intergenic	Intergenic	-50965	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
227549	chr9	91905651	91906800	+	0	NA	intron (NM_001318204, intron 1 of 7)	intron (NM_001318204, intron 1 of 7)	44003	NM_004560	4920		NM_004560	ENSG00000169071	ROR2	BDB|BDB1|NTRKR2	receptor tyrosine kinase like orphan receptor 2	protein-coding
188363	chr5	151770521	151772740	+	0	NA	promoter-TSS (NM_005754)	promoter-TSS (NM_005754)	-122	NR_132346	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
140365	chr2	232773721	232774180	+	0	NA	intron (NM_002242, intron 1 of 2)	intron (NM_002242, intron 1 of 2)	2615	NM_001172417	3769		NM_002242	ENSG00000115474	KCNJ13	KIR1.4|KIR7.1|LCA16|SVD	potassium inwardly rectifying channel subfamily J member 13	protein-coding
174624	chr4	40304801	40306080	+	0	NA	Intergenic	Intergenic	-1745	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
98648	chr17	47821201	47822750	+	0	NA	promoter-TSS (NM_145798)	promoter-TSS (NM_145798)	-181	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
137296	chr2	195563471	195564930	+	0	NA	Intergenic	Intergenic	-92758	NM_001127257	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
29066	chr10	67887271	67888030	+	0	NA	intron (NM_001142498, intron 2 of 7)	AluSp|SINE|Alu	2469	NM_001142498	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
177076	chr4	108053071	108053430	+	0	NA	intron (NM_001130714, intron 9 of 9)	intron (NM_001130714, intron 9 of 9)	48586	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
64311	chr14	23571551	23572100	+	0	NA	exon (NM_032452, exon 5 of 7)	exon (NM_032452, exon 5 of 7)	-4034	NR_148937	8906		NM_003917	ENSG00000213983	AP1G2	G2AD	adaptor related protein complex 1 subunit gamma 2	protein-coding
48389	chr12	9616871	9617030	+	0	NA	promoter-TSS (NR_046450)	promoter-TSS (NR_046450)	-334	NR_046450	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
68075	chr14	75268921	75270100	+	0	NA	Intergenic	Intergenic	-9318	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
142063	chr20	2101651	2103950	+	0	NA	exon (NM_080836, exon 2 of 4)	exon (NM_080836, exon 2 of 4)	973	NM_080836	140901		NM_080836	ENSG00000125834	STK35	CLIK1|STK35L1	serine/threonine kinase 35	protein-coding
25414	chr10	6560021	6560380	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	20076	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
38317	chr11	44065621	44067430	+	0	NA	5' UTR (NM_032592, exon 1 of 15)	5' UTR (NM_032592, exon 1 of 15)	255	NM_032592	84680		NM_032592	ENSG00000110455	ACCS	ACS|PHACS	1-aminocyclopropane-1-carboxylate synthase homolog (inactive)	protein-coding
201489	chr6	148971321	148971580	+	0	NA	intron (NM_005715, intron 5 of 7)	L2a|LINE|L2	-6766	NR_038408	100128176		NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA
8498	chr1	40849371	40850310	+	0	NA	Intergenic	Intergenic	12523	NM_133467	163732		NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding
131487	chr2	96522421	96522680	+	0	NA	Intergenic	Intergenic	9756	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
90374	chr17	1261001	1261280	+	0	NA	Intergenic	AluSz|SINE|Alu	-9304	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
109607	chr19	935501	935900	+	0	NA	intron (NM_005224, intron 3 of 8)	AluJo|SINE|Alu	9665	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
222749	chr8	141412851	141413150	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-8388	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
26449	chr10	17443951	17444600	+	0	NA	intron (NR_144322, intron 2 of 6)	intron (NR_144322, intron 2 of 6)	10320	NM_001345961	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
81228	chr16	4536751	4536850	+	0	NA	intron (NM_001199055, intron 1 of 5)	AluJb|SINE|Alu	1629	NM_001199054	29965		NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
95403	chr17	36004301	36004900	+	0	NA	Intergenic	Intergenic	-2562	NR_027921	348249		NR_027921		CCL15-CCL14	CCL15|HCC-2|LKN-1|MIP-5|MIP5|Mrp-2b|NCC-3|NCC3|SCYA15	CCL15-CCL14 readthrough (NMD candidate)	ncRNA
191412	chr6	9811151	9811330	+	0	NA	Intergenic	L1PA3|LINE|L1	-593262	NR_145448	109729173		NR_145448	ENSG00000285278	TFAP2A-AS2	HIPSTR	TFAP2A antisense RNA 2	ncRNA
34578	chr10	133237801	133238400	+	0	NA	exon (NM_014468, exon 1 of 3)	exon (NM_014468, exon 1 of 3)	245	NM_014468	27287		NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
215185	chr7	155732751	155733050	+	0	NA	intron (NM_053043, intron 9 of 17)	intron (NM_053043, intron 9 of 17)	76263	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
98426	chr17	46774051	46774150	+	0	NA	intron (NM_030753, intron 1 of 4)	intron (NM_030753, intron 1 of 4)	44592	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
38119	chr11	35237851	35238500	+	0	NA	Intergenic	Intergenic	75225	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
48187	chr12	8026051	8028030	+	0	NA	Intergenic	Intergenic	-5676	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
123436	chr19	54124101	54124500	+	0	NA	intron (NM_015629, intron 7 of 13)	intron (NM_015629, intron 7 of 13)	8546	NM_015629	26121		NM_015629	ENSG00000105618	PRPF31	NY-BR-99|PRP31|RP11|SNRNP61	pre-mRNA processing factor 31	protein-coding
132038	chr2	101003551	101004150	+	0	NA	intron (NM_001098577, intron 2 of 4)	intron (NM_001098577, intron 2 of 4)	1561	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
152606	chr22	21403001	21403200	+	0	NA	Intergenic	Intergenic	-14271	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
109957	chr19	1380971	1381600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2622	NM_024407	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
225312	chr9	34588951	34589050	+	0	NA	intron (NM_001207011, intron 1 of 9)	intron (NM_001207011, intron 1 of 9)	724	NM_147164	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
57135	chr12	121224671	121225680	+	0	NA	intron (NR_046373, intron 4 of 10)	AluSx1|SINE|Alu	15046	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
32842	chr10	110041171	110041730	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-33069	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
169444	chr3	165572751	165572950	+	0	NA	Intergenic	L1PA3|LINE|L1	264573	NR_137636	590		NM_000055	ENSG00000114200	BCHE	BCHED|CHE1|CHE2|E1	butyrylcholinesterase	protein-coding
198482	chr6	106247521	106247980	+	0	NA	intron (NR_104402, intron 4 of 5)	Tigger17c|DNA|TcMar-Tigger	68516	NR_104402	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
51749	chr12	53259901	53260100	+	0	NA	Intergenic	AluSz|SINE|Alu	7905	NM_032889	84975		NM_032889	ENSG00000182544	MFSD5	SLC61A1|hsMOT2	major facilitator superfamily domain containing 5	protein-coding
55741	chr12	108336471	108336630	+	0	NA	intron (NM_004072, intron 1 of 2)	AluYf1|SINE|Alu	2761	NM_001142343	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
94697	chr17	30669901	30670750	+	0	NA	Intergenic	AluY|SINE|Alu	-39283	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
174170	chr4	36283021	36283630	+	0	NA	intron (NM_001378435, intron 1 of 7)	intron (NM_001378435, intron 1 of 7)	1709	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
126254	chr2	27089201	27089630	+	0	NA	intron (NM_006488, intron 1 of 7)	intron (NM_006488, intron 1 of 7)	2643	NM_000221	3795		NM_000221	ENSG00000138030	KHK	FRUCTU	ketohexokinase	protein-coding
107409	chr18	46160521	46160780	+	0	NA	Intergenic	Intergenic	-13372	NM_001008239	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
6204	chr1	27463501	27463980	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	26427	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
116201	chr19	17485851	17486150	+	0	NA	intron (NM_198580, intron 1 of 11)	intron (NM_198580, intron 1 of 11)	15476	NM_198580	376497		NM_198580	ENSG00000130304	SLC27A1	ACSVL5|FATP|FATP-1|FATP1	solute carrier family 27 member 1	protein-coding
237407	chrX	119605421	119607000	+	0	NA	non-coding (NR_163972, exon 1 of 4)	non-coding (NR_163972, exon 1 of 4)	214	NM_017544	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
60284	chr13	40625051	40625300	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	41466	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
195255	chr6	36422901	36424300	+	0	NA	intron (NM_152990, intron 3 of 4)	CpG	-19167	NM_001286580	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
213825	chr7	141560501	141560700	+	0	NA	intron (NM_018238, intron 2 of 15)	L1PB2|LINE|L1	9190	NM_001364948	55750		NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
185591	chr5	131401551	131402080	+	0	NA	Intergenic	AluSc8|SINE|Alu	137762	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
152956	chr22	22944351	22944650	+	0	NA	Intergenic	Intergenic	56684	NM_001178126	100423062		NM_001178126	ENSG00000254709	IGLL5	IGL|IGLV|VL-MAR	immunoglobulin lambda like polypeptide 5	protein-coding
80178	chr16	2122971	2123130	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-10069	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
28422	chr10	48289621	48290100	+	0	NA	Intergenic	Intergenic	-15164	NM_001018071	143162		NM_152428	ENSG00000170324	FRMPD2	PDZD5C|PDZK4|PDZK5C	FERM and PDZ domain containing 2	protein-coding
121371	chr19	46856001	46857450	+	0	NA	Intergenic	Intergenic	-4272	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
216337	chr8	13566521	13566780	+	0	NA	promoter-TSS (NM_001007090)	promoter-TSS (NM_001007090)	-219	NM_001007090	157773		NM_001007090	ENSG00000164743	C8orf48	-	chromosome 8 open reading frame 48	protein-coding
140607	chr2	233409201	233410480	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	-9372	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
177227	chr4	108533471	108533830	+	0	NA	Intergenic	Intergenic	-23583	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
56890	chr12	120315521	120316280	+	0	NA	Intergenic	AluY|SINE|Alu	11879	NM_000928	5319		NM_000928	ENSG00000170890	PLA2G1B	PLA2|PLA2A|PPLA2	phospholipase A2 group IB	protein-coding
177343	chr4	110055151	110055700	+	0	NA	intron (NM_024090, intron 3 of 3)	intron (NM_024090, intron 3 of 3)	142542	NM_001178131	1950		NM_001963	ENSG00000138798	EGF	HOMG4|URG	epidermal growth factor	protein-coding
135363	chr2	160420251	160420750	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	-12618	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
160241	chr3	23973321	23973750	+	0	NA	intron (NR_110524, intron 8 of 8)	Tigger3b|DNA|TcMar-Tigger	-26973	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
43085	chr11	74767901	74769180	+	0	NA	intron (NM_001098638, intron 1 of 5)	AluSz|SINE|Alu	19691	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
226057	chr9	61851401	61851680	+	0	NA	Intergenic	LTR77|LTR|ERV1	-2544	NR_027421	100132948		NM_001024942	ENSG00000231527	FAM27C	FAM27A|FAM27A1|FAM27A3|bA7G23.5	family with sequence similarity 27 member C	ncRNA
63379	chr13	114055971	114056380	+	0	NA	intron (NM_001320822, intron 2 of 23).2	intron (NM_001320822, intron 2 of 23).2	21780	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
185417	chr5	130109351	130109530	+	0	NA	intron (NM_175856, intron 2 of 2)	intron (NM_175856, intron 2 of 2)	204975	NM_175856	337876		NM_175856	ENSG00000198108	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
207138	chr7	43059451	43059650	+	0	NA	Intergenic	L1PA2|LINE|L1	-53097	NM_015052	23072		NM_015052	ENSG00000002746	HECW1	NEDL1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding
168775	chr3	151293451	151293650	+	0	NA	TTS (NM_023915)	TTS (NM_023915)	-15008	NM_014879	9934		NM_014879	ENSG00000174944	P2RY14	BPR105|GPR105|P2Y14	purinergic receptor P2Y14	protein-coding
206581	chr7	35691401	35692680	+	0	NA	intron (NM_022373, intron 2 of 8)	intron (NM_022373, intron 2 of 8)	3095	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
140957	chr2	237895771	237896130	+	0	NA	intron (NM_005855, intron 2 of 2)	intron (NM_005855, intron 2 of 2)	36327	NM_005855	10267		NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding
116080	chr19	17244271	17244430	+	0	NA	intron (NM_005234, intron 1 of 3)	intron (NM_005234, intron 1 of 3)	992	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
123897	chr19	55335601	55335980	+	0	NA	Intergenic	AluY|SINE|Alu	-4086	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
80871	chr16	3578601	3579700	+	0	NA	Intergenic	Intergenic	-1747	NR_075083	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
55978	chr12	110123901	110124900	+	0	NA	promoter-TSS (NR_144952)	promoter-TSS (NR_144952)	43	NR_144951	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
56865	chr12	120278771	120278930	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-12930	NM_001385735	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
31063	chr10	88993021	88993480	+	0	NA	promoter-TSS (NR_028371)	promoter-TSS (NR_028371)	-275	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
139052	chr2	218709321	218709700	+	0	NA	Intergenic	L1MC5a|LINE|L1	-1325	NM_014640	9654		NM_014640	ENSG00000135912	TTLL4	-	tubulin tyrosine ligase like 4	protein-coding
182819	chr5	69165171	69165330	+	0	NA	Intergenic	L1MC1|LINE|L1	-1760	NM_001354844	891		NM_031966	ENSG00000134057	CCNB1	CCNB	cyclin B1	protein-coding
71430	chr14	105617151	105617650	+	0	NA	Intergenic	Intergenic	-3716	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
158167	chr22	50209721	50210780	+	0	NA	exon (NM_031454, exon 4 of 9)	exon (NM_031454, exon 4 of 9)	9239	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
9548	chr1	51520101	51521530	+	0	NA	Intergenic	Intergenic	-1549	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
58958	chr13	19818201	19818430	+	0	NA	Intergenic	CpG	-35279	NR_149053	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
148813	chr21	8257701	8258400	+	0	NA	intron (NR_003287, intron 1 of 2)	CpG-18247	1269	NR_146120	109864274		NR_146120		RNA5-8SN4	RN5-8S1|RNA5-8S5	RNA, 5.8S ribosomal N4	rRNA
121908	chr19	48403021	48404050	+	0	NA	intron (NM_000836, intron 3 of 13)	L2a|LINE|L2	9867	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
205067	chr7	6617071	6617800	+	0	NA	intron (NM_001353546, intron 2 of 2)	intron (NM_001353546, intron 2 of 2)	1825	NM_001353546	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
177049	chr4	107974321	107974780	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-15339	NM_001184705	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
31609	chr10	97369071	97369750	+	0	NA	intron (NM_015179, intron 25 of 33)	intron (NM_015179, intron 25 of 33)	31930	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
135069	chr2	156477851	156478150	+	0	NA	intron (NM_000408, intron 2 of 16)	intron (NM_000408, intron 2 of 16)	41621	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
35601	chr11	1755071	1755230	+	0	NA	intron (NM_001909, intron 5 of 8)	L2c|LINE|L2	-4555	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
12180	chr1	100365771	100366400	+	0	NA	intron (NM_001319210, intron 2 of 16)	L2c|LINE|L2	13579	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
104920	chr17	81913551	81913850	+	0	NA	intron (NM_016538, intron 9 of 9)	intron (NM_016538, intron 9 of 9)	-2301	NM_001256435	5833		NM_002861	ENSG00000185813	PCYT2	ET|SPG82	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
17176	chr1	156226471	156227100	+	0	NA	intron (NM_001199654, intron 2 of 4)	MIRb|SINE|MIR	13797	NM_001199653	11243		NM_007221	ENSG00000160783	PMF1	-	polyamine modulated factor 1	protein-coding
1329	chr1	2442801	2443080	+	0	NA	Intergenic	Intergenic	-24511	NM_001303012	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
227576	chr9	92297451	92298030	+	0	NA	non-coding (NR_046106, exon 17 of 17)	non-coding (NR_046106, exon 17 of 17)	-4043	NM_001378576	3376		NM_002161	ENSG00000196305	IARS1	GRIDHH|IARS|ILERS|ILRS|IRS|PRO0785	isoleucyl-tRNA synthetase 1	protein-coding
122724	chr19	50003801	50004730	+	0	NA	intron (NM_001308420, intron 5 of 12)	intron (NM_001308420, intron 5 of 12)	21107	NM_001308420	51231		NM_016440	ENSG00000105053	VRK3	-	VRK serine/threonine kinase 3	protein-coding
141883	chr20	768621	769080	+	0	NA	promoter-TSS (NM_033409)	promoter-TSS (NM_033409)	-350	NM_033409	113278		NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
68493	chr14	88029821	88030430	+	0	NA	intron (NR_046094, intron 2 of 3)	MSTB1|LTR|ERVL-MaLR	-3813	NR_110121	101928791		NR_110121		LINC01147	-	long intergenic non-protein coding RNA 1147	ncRNA
121658	chr19	47491571	47491980	+	0	NA	intron (NR_038456, intron 8 of 11)	intron (NR_038456, intron 8 of 11)	7493	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
177192	chr4	108176151	108176250	+	0	NA	non-coding (NR_029374, exon 3 of 3)	non-coding (NR_029374, exon 3 of 3)	4080	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
128455	chr2	55617201	55618300	+	0	NA	promoter-TSS (NM_001282850)	promoter-TSS (NM_001282850)	-128	NM_001282850	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
125913	chr2	24926821	24927300	+	0	NA	Intergenic	Intergenic	-6823	NM_001320613	109		NM_004036	ENSG00000138031	ADCY3	AC-III|AC3|BMIQ19	adenylate cyclase 3	protein-coding
211772	chr7	107543421	107543680	+	0	NA	intron (NM_001379511, intron 5 of 20)	L1M3e|LINE|L1	20370	NM_001379516	10466		NM_006348	ENSG00000164597	COG5	CDG2I|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding
39522	chr11	61081451	61081550	+	0	NA	Intergenic	Intergenic	-12463	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
96804	chr17	41916951	41917250	+	0	NA	intron (NM_001303274, intron 1 of 28)	AluSg|SINE|Alu	1851	NM_001096	47		NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
70451	chr14	102052771	102052950	+	0	NA	3' UTR (NM_001376, exon 78 of 78)	3' UTR (NM_001376, exon 78 of 78)	34184	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
125282	chr2	10479971	10480130	+	0	NA	Intergenic	Intergenic	30322	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
180815	chr5	32430651	32431180	+	0	NA	intron (NR_144318, intron 2 of 18)	AluJb|SINE|Alu	13825	NM_016107	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
132974	chr2	111485821	111486700	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	8901	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
147233	chr20	57407601	57408200	+	0	NA	3' UTR (NM_017495, exon 4 of 4)	3' UTR (NM_017495, exon 4 of 4)	-14844	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
164276	chr3	57580351	57580650	+	0	NA	intron (NM_001660, intron 3 of 5)	AluJr|SINE|Alu	16844	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
220745	chr8	102240851	102241330	+	0	NA	intron (NR_125415, intron 1 of 2)	AluSq2|SINE|Alu	1639	NR_125415	101927221		NR_125415		UBR5-DT	UBR5-AS1	UBR5 divergent transcript	ncRNA
172147	chr4	1203421	1204600	+	0	NA	intron (NR_024569, intron 2 of 3)	AluSz|SINE|Alu	4952	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
188110	chr5	150376651	150377650	+	0	NA	intron (NM_001371623, intron 14 of 26)	L2b|LINE|L2	19453	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
155791	chr22	39297101	39297830	+	0	NA	Intergenic	Intergenic	16446	NR_000028	116938		NR_000028	ENSG00000209480	SNORD83B	RNU83B|U83B	small nucleolar RNA, C/D box 83B	snoRNA
196828	chr6	46626121	46626500	+	0	NA	intron (NM_001278738, intron 6 of 11)	intron (NM_001278738, intron 6 of 11)	26508	NM_016593	51302		NM_016593	ENSG00000146233	CYP39A1	-	cytochrome P450 family 39 subfamily A member 1	protein-coding
115711	chr19	16216401	16217830	+	0	NA	intron (NM_001130524, intron 6 of 12)	L1ME1|LINE|L1	19204	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
145461	chr20	43700001	43700600	+	0	NA	intron (NM_001278610, intron 6 of 12)	L2c|LINE|L2	26702	NM_001008901	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
19692	chr1	181037251	181037550	+	0	NA	intron (NM_001310213, intron 3 of 6)	intron (NM_001310213, intron 3 of 6)	3417	NM_001385162	3140		NM_001531	ENSG00000153029	MR1	HLALS	major histocompatibility complex, class I-related	protein-coding
73208	chr15	41561071	41561230	+	0	NA	exon (NM_001330264, exon 2 of 19)	exon (NM_001330264, exon 2 of 19)	1178	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
101095	chr17	64968401	64969590	+	0	NA	intron (NR_026903, intron 4 of 4)	intron (NR_026903, intron 4 of 4)	6590	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
235962	chrX	53445951	53446280	+	0	NA	Intergenic	MER67B|LTR|ERV1	-11739	NM_001037811	3028		NM_004493	ENSG00000072506	HSD17B10	17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1	hydroxysteroid 17-beta dehydrogenase 10	protein-coding
47488	chr12	3950471	3952280	+	0	NA	Intergenic	Intergenic	-77927	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
49056	chr12	14401301	14402080	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	16409	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
181180	chr5	39099751	39100330	+	0	NA	Intergenic	MamRTE1|LINE|RTE-BovB	-25641	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
155460	chr22	38479921	38480400	+	0	NA	intron (NM_006855, intron 3 of 4)	AluSz|SINE|Alu	12064	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
105264	chr17	82445501	82446030	+	0	NA	intron (NM_001193654, intron 5 of 6)	intron (NM_001193654, intron 5 of 6)	3961	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
145790	chr20	45380971	45381130	+	0	NA	intron (NR_003189, intron 3 of 5)	L2b|LINE|L2	-2725	NM_014477	27296		NM_014477	ENSG00000124251	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
228271	chr9	98061821	98062280	+	0	NA	intron (NM_018946, intron 2 of 5)	AluJr|SINE|Alu	5318	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
3631	chr1	16382071	16382230	+	0	NA	intron (NR_073500, intron 1 of 1)	L2a|LINE|L2	14908	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
213547	chr7	139101901	139102100	+	0	NA	intron (NM_020119, intron 1 of 12)	SVA_C|Retroposon|SVA	7720	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
202272	chr6	157053071	157053230	+	0	NA	intron (NM_001363725, intron 2 of 17)	AluSx1|SINE|Alu	16723	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
122623	chr19	49811371	49811750	+	0	NA	intron (NM_025129, intron 4 of 10)	intron (NM_025129, intron 4 of 10)	1732	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
165112	chr3	71585951	71586050	+	0	NA	Intergenic	MIR|SINE|MIR	-2022	NM_001244810	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
46078	chr11	122812601	122812800	+	0	NA	3' UTR (NM_001363365, exon 14 of 14)	3' UTR (NM_001363365, exon 14 of 14)	-25800	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
68738	chr14	91009401	91010000	+	0	NA	intron (NM_001322228, intron 1 of 15)	intron (NM_001322228, intron 1 of 15)	50424	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
37643	chr11	22432501	22432700	+	0	NA	Intergenic	Intergenic	59419	NR_120583	102723378		NR_120583	ENSG00000255323	LINC01495	-	long intergenic non-protein coding RNA 1495	ncRNA
90864	chr17	2371971	2372480	+	0	NA	exon (NM_001098509, exon 13 of 23)	exon (NM_001098509, exon 13 of 23)	28835	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
137029	chr2	190718721	190719180	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	59792	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
207027	chr7	38461851	38462150	+	0	NA	intron (NM_139316, intron 10 of 19)	Tigger5b|DNA|TcMar-Tigger	120423	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
117908	chr19	32809301	32809880	+	0	NA	intron (NM_001366102, intron 22 of 32)	intron (NM_001366102, intron 22 of 32)	60177	NM_001243036	11136		NM_014270	ENSG00000021488	SLC7A9	BAT1|CSNU3	solute carrier family 7 member 9	protein-coding
143081	chr20	21559221	21559680	+	0	NA	Intergenic	Intergenic	-10574	NR_109880	101929625		NR_109880		LINC01727	IRENA	long intergenic non-protein coding RNA 1727	ncRNA
179954	chr5	783021	783500	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	1469	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
11780	chr1	92480371	92481280	+	0	NA	exon (NM_001127215, exon 4 of 7)	exon (NM_001127215, exon 4 of 7)	3129	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
63671	chr14	21066851	21067600	+	0	NA	intron (NM_001282211, intron 1 of 14)	L5|LINE|RTE-X	-3079	NM_001278529	55701		NM_018071	ENSG00000165801	ARHGEF40	SOLO	Rho guanine nucleotide exchange factor 40	protein-coding
2107	chr1	8031071	8031480	+	0	NA	Intergenic	Intergenic	-4966	NM_018948	54206		NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
227772	chr9	93118921	93119180	+	0	NA	Intergenic	Intergenic	15201	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
126817	chr2	30487851	30487950	+	0	NA	intron (NM_001304445, intron 3 of 7)	intron (NM_001304445, intron 3 of 7)	40654	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
153080	chr22	23326551	23326650	+	0	NA	promoter-TSS (NR_149133)	promoter-TSS (NR_149133)	-16	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
39726	chr11	61780221	61781600	+	0	NA	intron (NM_001127392, intron 19 of 26)	intron (NM_001127392, intron 19 of 26)	11651	NR_030342	693196		NR_030342	ENSG00000284108	MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
5778	chr1	26528401	26528600	+	0	NA	Intergenic	MIR3|SINE|MIR	-1261	NM_002953	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
210673	chr7	100542071	100542250	+	0	NA	intron (NM_006076, intron 1 of 11)	AluSz|SINE|Alu	2957	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
123879	chr19	55286301	55288530	+	0	NA	intron (NM_032430, intron 3 of 18)	intron (NM_032430, intron 3 of 18)	3418	NM_032430	84446		NM_032430	ENSG00000160469	BRSK1	SAD-B|hSAD1	BR serine/threonine kinase 1	protein-coding
20153	chr1	192603201	192603800	+	0	NA	Intergenic	Intergenic	27727	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
7711	chr1	36091351	36091450	+	0	NA	intron (NM_017825, intron 2 of 5)	intron (NM_017825, intron 2 of 5)	2508	NM_017825	54936		NM_017825	ENSG00000116863	ADPRS	ADPRHL2|ARH3|CONDSIAS	ADP-ribosylserine hydrolase	protein-coding
230621	chr9	128631951	128632330	+	0	NA	exon (NM_003127, exon 52 of 56)	exon (NM_003127, exon 52 of 56)	24710	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
18983	chr1	169133001	169133250	+	0	NA	TTS (NM_001677)	TTS (NM_001677)	26435	NM_001677	481		NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
178395	chr4	147550651	147550980	+	0	NA	Intergenic	Intergenic	-66582	NM_018241	55751		NM_018241	ENSG00000164168	TMEM184C	SLC51C3|TMEM34	transmembrane protein 184C	protein-coding
211576	chr7	105689401	105690100	+	0	NA	intron (NM_001385596, intron 3 of 11)	intron (NM_001385596, intron 3 of 11)	-10588	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
189938	chr5	177396671	177397030	+	0	NA	intron (NM_003052, intron 11 of 12)	intron (NM_003052, intron 11 of 12)	3811	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
196	chr1	689551	689850	+	0	NA	Intergenic	Intergenic	-3046	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
68569	chr14	89420051	89420580	+	0	NA	TTS (NR_036500)	TTS (NR_036500)	2961	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
117658	chr19	23996651	23996790	+	0	NA	Intergenic	AluJb|SINE|Alu	-36685	NM_001278661	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
76850	chr15	77870421	77870850	+	0	NA	Intergenic	Intergenic	-49735	NM_001301186	84894		NM_032808	ENSG00000169783	LINGO1	LERN1|LRRN6A|MRT64|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
179604	chr4	185467801	185468480	+	0	NA	intron (NM_001145411, intron 2 of 5)	intron (NM_001145411, intron 2 of 5)	-3291	NR_133944	105377590		NR_133944		LOC105377590	-	uncharacterized LOC105377590	ncRNA
188228	chr5	150801001	150801450	+	0	NA	Intergenic	Intergenic	23279	NM_032947	85027		NM_032947	ENSG00000256235	SMIM3	C5orf62|MST150|NID67	small integral membrane protein 3	protein-coding
143200	chr20	24948451	24950280	+	0	NA	promoter-TSS (NM_003650)	promoter-TSS (NM_003650)	96	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
17415	chr1	156648271	156648430	+	0	NA	intron (NM_198427, intron 5 of 7)	intron (NM_198427, intron 5 of 7)	6233	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
203487	chr7	583251	584600	+	0	NA	intron (NM_001164759, intron 8 of 10)	intron (NM_001164759, intron 8 of 10)	-18920	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
115832	chr19	16497871	16498030	+	0	NA	intron (NM_001288834, intron 1 of 7)	AluJb|SINE|Alu	1556	NM_032207	84167		NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
133489	chr2	119934221	119934930	+	0	NA	intron (NM_002830, intron 14 of 26)	MIR3|SINE|MIR	-78502	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
237922	chrX	132022801	132023700	+	0	NA	promoter-TSS (NM_016542)	promoter-TSS (NM_016542)	-52	NM_001042453	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
147421	chr20	58893701	58894280	+	0	NA	intron (NR_132272, intron 1 of 3)	intron (NR_132272, intron 1 of 3)	1827	NR_132272	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
119755	chr19	41285901	41286280	+	0	NA	intron (NM_144732, intron 7 of 14)	Tigger2b_Pri|DNA|TcMar-Tigger	21009	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
49744	chr12	31727401	31727600	+	0	NA	intron (NM_001278412, intron 1 of 8)	intron (NM_001278412, intron 1 of 8)	1521	NM_001113402	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
182952	chr5	71228851	71228950	+	0	NA	intron (NR_033968, intron 1 of 3).5	Tigger17a|DNA|TcMar-Tigger	-20769	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
43959	chr11	93735021	93735780	+	0	NA	promoter-TSS (NR_002973)	promoter-TSS (NR_002973)	-164	NR_002973	677822		NR_002973	ENSG00000210825	SNORA40	ACA40|SNORA40A	small nucleolar RNA, H/ACA box 40	snoRNA
202129	chr6	154843771	154844330	+	0	NA	Intergenic	Intergenic	-9310	NR_036100	100422821		NR_036100	ENSG00000264814	MIR1273C	-	microRNA 1273c	ncRNA
132127	chr2	101696801	101698650	+	0	NA	promoter-TSS (NM_001384490)	promoter-TSS (NM_001384490)	18	NM_001384477	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
51967	chr12	53935121	53936030	+	0	NA	non-coding (NR_047507, exon 3 of 3)	non-coding (NR_047507, exon 3 of 3)	-3256	NM_017410	3229		NM_017410	ENSG00000123364	HOXC13	ECTD9|HOX3|HOX3G	homeobox C13	protein-coding
179703	chr4	190173551	190174450	+	0	NA	exon (NM_001293798, exon 1 of 3).3	exon (NM_001293798, exon 1 of 3).3	226	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
176500	chr4	94207401	94208650	+	0	NA	promoter-TSS (NR_045644)	promoter-TSS (NR_045644)	-59	NR_045644	56916		NM_020159	ENSG00000163104	SMARCAD1	ADERM|BASNS|ETL1|HEL1|HRZ|TYS	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding
183364	chr5	77157971	77158330	+	0	NA	Intergenic	MIR|SINE|MIR	-22154	NM_001349752	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
144312	chr20	34834271	34834880	+	0	NA	promoter-TSS (NR_002165)	promoter-TSS (NR_002165)	-113	NR_002165	128872		NM_178467		HMGB3P1	HMG4L|HMGB3L1|dJ18C9.3	high mobility group box 3 pseudogene 1	pseudo
182602	chr5	66141701	66141900	+	0	NA	Intergenic	L2c|LINE|L2	-2500	NM_001077199	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
157420	chr22	45142371	45142550	+	0	NA	intron (NR_038956, intron 1 of 2)	intron (NR_038956, intron 1 of 2)	10124	NR_038957	100506714		NR_038956	ENSG00000226328	NUP50-DT	NUP50-AS1	NUP50 divergent transcript	ncRNA
107224	chr18	36298301	36298550	+	0	NA	intron (NM_001281739, intron 1 of 23)	CpG	712	NM_025135	80206		NM_025135	ENSG00000134775	FHOD3	CMH28|FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
210774	chr7	100705221	100707180	+	0	NA	promoter-TSS (NM_005837)	promoter-TSS (NM_005837)	79	NM_005837	10248		NM_005837	ENSG00000172336	POP7	0610037N12Rik|RPP2|RPP20	POP7 homolog, ribonuclease P/MRP subunit	protein-coding
129863	chr2	73068951	73069250	+	0	NA	intron (NM_001371737, intron 1 of 14)	L2b|LINE|L2	2224	NM_001330403	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
168498	chr3	143528821	143529280	+	0	NA	intron (NM_173653, intron 9 of 15)	intron (NM_173653, intron 9 of 15)	186804	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
161695	chr3	43492051	43492150	+	0	NA	intron (NM_001346467, intron 12 of 13)	L1P2|LINE|L1	129826	NM_001346467	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
153201	chr22	23854371	23854530	+	0	NA	intron (NR_003082, intron 4 of 4)	SVA_E|Retroposon|SVA	-2253	NR_104248	66035		NM_030807	ENSG00000133460	SLC2A11	GLUT10|GLUT11	solute carrier family 2 member 11	protein-coding
98847	chr17	48442971	48443550	+	0	NA	Intergenic	HSMAR1|DNA|TcMar-Mariner	-1573	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
8220	chr1	39682071	39682230	+	0	NA	3' UTR (NM_001282397, exon 3 of 3)	3' UTR (NM_001282397, exon 3 of 3)	9283	NM_016257	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
97441	chr17	43576621	43577150	+	0	NA	Intergenic	Intergenic	-30545	NM_001261437	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
224461	chr9	15509671	15510500	+	0	NA	intron (NM_001317898, intron 2 of 10)	intron (NM_001317898, intron 2 of 10)	204	NM_021144	11168		NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SRSF1 interacting protein 1	protein-coding
21206	chr1	204075401	204075800	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	2485	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
202994	chr6	162827601	162828000	+	0	NA	intron (NM_001080378, intron 3 of 5)	L2c|LINE|L2	99830	NM_001080379	135138		NM_152410	ENSG00000112530	PACRG	BUG21|GLUP|HAK005771|PACRG2.1|PARK2CRG|pf12	parkin coregulated	protein-coding
141259	chr2	239927271	239927900	+	0	NA	intron (NR_136158, intron 7 of 10)	L1MD2|LINE|L1	15509	NR_039949	100616417		NR_039949	ENSG00000264279	MIR4786	mir-4786	microRNA 4786	ncRNA
58812	chr12	132813571	132813730	+	0	NA	intron (NM_005895, intron 3 of 23)	intron (NM_005895, intron 3 of 23)	14739	NM_005895	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
231075	chr9	129697201	129697980	+	0	NA	intron (NM_016307, intron 1 of 3)	(TGGCGCGC)n|Simple_repeat|Simple_repeat	21116	NR_132102	101929437		NR_132102	ENSG00000236024	PRRX2-AS1	-	PRRX2 antisense RNA 1	ncRNA
200125	chr6	130219401	130219600	+	0	NA	intron (NM_001258275, intron 3 of 13)	L1PB1|LINE|L1	3451	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
169007	chr3	152436651	152437180	+	0	NA	intron (NM_207296, intron 4 of 8)	intron (NM_207296, intron 4 of 8)	-95925	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
172072	chr4	1031871	1032030	+	0	NA	Intergenic	Intergenic	19486	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
57703	chr12	122858071	122859180	+	0	NA	TTS (NM_001303097)	TTS (NM_001303097)	23168	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
218692	chr8	58554971	58555730	+	0	NA	intron (NM_001007067, intron 1 of 8)	L1MC|LINE|L1	2089	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
237044	chrX	103214601	103216430	+	0	NA	intron (NM_001127688, intron 1 of 1)	intron (NM_001127688, intron 1 of 1)	407	NM_001080425	56271		NM_001080425	ENSG00000102409	BEX4	BEXL1	brain expressed X-linked 4	protein-coding
168466	chr3	143061051	143061150	+	0	NA	TTS (NM_001320220)	TTS (NM_001320220)	-58671	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
1890	chr1	6442301	6442750	+	0	NA	intron (NM_031475, intron 5 of 12)	AluSc|SINE|Alu	-12629	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
52149	chr12	54258951	54259050	+	0	NA	intron (NM_012117, intron 1 of 4)	intron (NM_012117, intron 1 of 4)	545	NM_001127322	23468		NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A|HP1alpha	chromobox 5	protein-coding
224790	chr9	22112821	22113080	+	0	NA	intron (NR_047535, intron 5 of 7)	intron (NR_047535, intron 5 of 7)	-103637	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
199211	chr6	111796621	111797130	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-36958	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
132292	chr2	105074921	105075180	+	0	NA	intron (NM_182640, intron 4 of 10)	MER1A|DNA|hAT-Charlie	27894	NR_110227	101927492		NR_110227	ENSG00000231851	MRPS9-AS1	UTAT33	MRPS9 antisense RNA 1	ncRNA
190414	chr5	179821501	179822550	+	0	NA	intron (NM_003900, intron 1 of 7).2	L1MB8|LINE|L1	1120	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
91202	chr17	3909271	3909630	+	0	NA	intron (NM_002558, intron 1 of 11)	intron (NM_002558, intron 1 of 11)	7015	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
13018	chr1	111197401	111198130	+	0	NA	intron (NM_001271833, intron 4 of 11)	intron (NM_001271833, intron 4 of 11)	2881	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
137323	chr2	196078151	196078750	+	0	NA	Intergenic	Intergenic	-9613	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
35309	chr11	1028921	1029400	+	0	NA	intron (NM_005961, intron 10 of 32)	CpG	7558	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
31301	chr10	92596501	92596800	+	0	NA	intron (NM_004523, intron 1 of 21)	L1MB3|LINE|L1	3520	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
87080	chr16	68444151	68444330	+	0	NA	intron (NM_018667, intron 1 of 8)	intron (NM_018667, intron 1 of 8)	4268	NM_018667	55512		NM_018667	ENSG00000103056	SMPD3	NSMASE2	sphingomyelin phosphodiesterase 3	protein-coding
50805	chr12	49066171	49066330	+	0	NA	exon (NM_001303126, exon 6 of 8)	exon (NM_001303126, exon 6 of 8)	3729	NM_144593	121268		NM_144593	ENSG00000167550	RHEBL1	RHEBL1c	RHEB like 1	protein-coding
50491	chr12	47786221	47786680	+	0	NA	intron (NR_160435, intron 21 of 24)	intron (NR_160435, intron 21 of 24)	13212	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
207249	chr7	43836721	43837700	+	0	NA	Intergenic	AluSx|SINE|Alu	32307	NM_032014	64951		NM_032014	ENSG00000062582	MRPS24	HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47	mitochondrial ribosomal protein S24	protein-coding
137247	chr2	191739671	191740430	+	0	NA	Intergenic	Intergenic	49869	NR_131917	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
216441	chr8	19474901	19476350	+	0	NA	intron (NR_148900, intron 3 of 9)	intron (NR_148900, intron 3 of 9)	126920	NM_001354498	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
117371	chr19	19568071	19568230	+	0	NA	intron (NM_025245, intron 5 of 7)	intron (NM_025245, intron 5 of 7)	29885	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
175267	chr4	67510121	67510580	+	0	NA	intron (NR_155754, intron 9 of 18)	L2c|LINE|L2	35153	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
72509	chr15	33226321	33226850	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	20970	NR_046005	100652857		NR_046005		TMCO5B	-	transmembrane and coiled-coil domains 5B (pseudogene)	pseudo
82076	chr16	14193171	14193680	+	0	NA	intron (NM_001365415, intron 1 of 7)	L2b|LINE|L2	6739	NM_001365416	57496		NM_014048	ENSG00000186260	MRTFB	MKL2|MRTF-B|NPD001	myocardin related transcription factor B	protein-coding
154909	chr22	37185071	37185250	+	0	NA	intron (NM_031910, intron 2 of 2)	intron (NM_031910, intron 2 of 2)	3087	NM_031910	114904		NM_031910	ENSG00000133466	C1QTNF6	CTFP6|CTRP6|ZACRP6	C1q and TNF related 6	protein-coding
31972	chr10	100741771	100741930	+	0	NA	intron (NM_001374303, intron 1 of 2)	intron (NM_001374303, intron 1 of 2)	-3732	NM_003987	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
44636	chr11	110093751	110093850	+	0	NA	intron (NM_033390, intron 1 of 5)	CpG	408	NM_033390	85463		NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
189074	chr5	170276851	170277550	+	0	NA	intron (NM_005565, intron 3 of 20)	intron (NM_005565, intron 3 of 20)	20577	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
86470	chr16	66949721	66950950	+	0	NA	Intergenic	AluSz|SINE|Alu	-10931	NM_001185177	23491		NM_012122	ENSG00000172828	CES3	ES31	carboxylesterase 3	protein-coding
208820	chr7	73664051	73664350	+	0	NA	Intergenic	AluJr|SINE|Alu	-3631	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
165533	chr3	100650901	100651300	+	0	NA	intron (NM_001308362, intron 5 of 9)	intron (NM_001308362, intron 5 of 9)	15562	NM_001308362	84873		NM_032787	ENSG00000144820	ADGRG7	GPR128	adhesion G protein-coupled receptor G7	protein-coding
63520	chr13	114316451	114316550	+	0	NA	intron (NM_001164145, intron 1 of 2)	AluSx3|SINE|Alu	1997	NM_001164144	283489		NM_032436	ENSG00000198824	CHAMP1	C13orf8|CAMP|CHAMP|MRD40|NEDHILD|ZNF828	chromosome alignment maintaining phosphoprotein 1	protein-coding
78998	chr15	101967471	101967630	+	0	NA	intron (NR_003659, intron 2 of 10)	intron (NR_003659, intron 2 of 10)	-5974	NR_128720	103504738		NR_128720	ENSG00000278739	MIR6859-4	hsa-mir-6859-4	microRNA 6859-4	ncRNA
82283	chr16	15509021	15510080	+	0	NA	intron (NM_001142469, intron 1 of 5).2	MIRb|SINE|MIR	7284	NM_001142469	89927		NM_033201	ENSG00000166780	BMERB1	C16orf45|MINP	bMERB domain containing 1	protein-coding
102144	chr17	75091521	75092230	+	0	NA	intron (NM_001369668, intron 1 of 5)	intron (NM_001369668, intron 1 of 5)	3921	NM_004695	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
154659	chr22	36347201	36347780	+	0	NA	intron (NM_002473, intron 2 of 40)	AluJr|SINE|Alu	40477	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
216712	chr8	22287251	22287750	+	0	NA	intron (NM_001135721, intron 6 of 22)	intron (NM_001135721, intron 6 of 22)	11933	NM_001135721	55124		NM_018068	ENSG00000197181	PIWIL2	CT80|HILI|PIWIL1L|mili	piwi like RNA-mediated gene silencing 2	protein-coding
117877	chr19	32670001	32670200	+	0	NA	intron (NM_032139, intron 1 of 28)	intron (NM_032139, intron 1 of 28)	5080	NM_032139	84079		NM_032139	ENSG00000105186	ANKRD27	PP12899|VARP	ankyrin repeat domain 27	protein-coding
162290	chr3	47406671	47407230	+	0	NA	intron (NM_001304482, intron 8 of 23)	intron (NM_001304482, intron 8 of 23)	25929	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
136961	chr2	190406821	190408100	+	0	NA	promoter-TSS (NM_001375992)	promoter-TSS (NM_001375992)	-116	NM_001375989	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
213568	chr7	139330471	139330630	+	0	NA	Intergenic	L1MB2|LINE|L1	-9809	NM_001244585	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
99973	chr17	57585671	57585830	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	22662	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
46735	chr11	128956451	128956780	+	0	NA	Intergenic	Intergenic	-13216	NM_022112	63970		NM_022112	ENSG00000120471	TP53AIP1	P53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein-coding
140900	chr2	237685871	237686130	+	0	NA	intron (NM_001137550, intron 1 of 23)	L2|LINE|L2	-6164	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
39203	chr11	57499501	57499900	+	0	NA	intron (NM_003627, intron 5 of 14)	CpG	15209	NM_001198810	8501		NM_003627	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	solute carrier family 43 member 1	protein-coding
150651	chr21	43413751	43414200	+	0	NA	TTS (NM_001320643).2	TTS (NM_001320643).2	13156	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
61981	chr13	79541501	79541930	+	0	NA	intron (NM_001161407, intron 4 of 7)	intron (NM_001161407, intron 4 of 7)	-25012	NR_125772	103724388		NR_125772	ENSG00000227676	LINC01068	-	long intergenic non-protein coding RNA 1068	ncRNA
78064	chr15	90142521	90143600	+	0	NA	Intergenic	L1MA9|LINE|L1	-40592	NM_002168	3418		NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDH-2|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2	protein-coding
65989	chr14	58072601	58072880	+	0	NA	intron (NM_001001872, intron 5 of 7)	intron (NM_001001872, intron 5 of 7)	79473	NM_001320173	145407		NM_001001872	ENSG00000139971	ARMH4	C14orf37|UT2|c14_5376	armadillo like helical domain containing 4	protein-coding
53512	chr12	66742521	66742780	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	61619	NM_001379347	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
15563	chr1	150554901	150555100	+	0	NA	intron (NM_001288608, intron 8 of 19)	AluSg|SINE|Alu	3071	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
8131	chr1	39266171	39267180	+	0	NA	intron (NM_012090, intron 5 of 92)	intron (NM_012090, intron 5 of 92)	-142398	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
40163	chr11	62883721	62883980	+	0	NA	intron (NM_001012662, intron 6 of 11)	intron (NM_001012662, intron 6 of 11)	2151	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
53388	chr12	64690471	64690630	+	0	NA	intron (NM_178169, intron 3 of 4)	AluJr4|SINE|Alu	-67945	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
134743	chr2	144630521	144630780	+	0	NA	Intergenic	Intergenic	-37317	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
621	chr1	1321371	1322330	+	0	NA	intron (NM_001256463, intron 1 of 14)	intron (NM_001256463, intron 1 of 14)	2810	NM_001256463	54973		NM_017871	ENSG00000127054	INTS11	CPSF3L|CPSF73L|INT11|NEDMLOB|PSF3L|RC-68|RC68	integrator complex subunit 11	protein-coding
55824	chr12	108855271	108855430	+	0	NA	intron (NM_001161330, intron 1 of 13)	L1MB7|LINE|L1	2233	NM_018984	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
140650	chr2	233711401	233711680	+	0	NA	intron (NM_001072, intron 1 of 4)	intron (NM_001072, intron 1 of 4)	-1452	NM_019078	54579		NM_019078	ENSG00000288705	UGT1A5	UDPGT|UDPGT 1-5|UGT1E	UDP glucuronosyltransferase family 1 member A5	protein-coding
184862	chr5	112174921	112175250	+	0	NA	intron (NM_022140, intron 18 of 22)	intron (NM_022140, intron 18 of 22)	13600	NR_002922	654322		NR_002922	ENSG00000238363	SNORA13	ACA13	small nucleolar RNA, H/ACA box 13	snoRNA
173451	chr4	8402951	8403650	+	0	NA	intron (NM_001375787, intron 7 of 17)	intron (NM_001375787, intron 7 of 17)	25148	NM_001375787	8310		NM_003501	ENSG00000087008	ACOX3	-	acyl-CoA oxidase 3, pristanoyl	protein-coding
150901	chr21	44157421	44158100	+	0	NA	Intergenic	Intergenic	2102	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
226000	chr9	41349371	41349600	+	0	NA	Intergenic	Intergenic	-9377	NR_148348	107984035		NR_148348		LOC107984035	-	uncharacterized LOC107984035	ncRNA
143814	chr20	32475871	32476450	+	0	NA	intron (NM_001256798, intron 4 of 10)	intron (NM_001256798, intron 4 of 10)	7330	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
106554	chr18	21628871	21629280	+	0	NA	exon (NM_006938, exon 4 of 4)	exon (NM_006938, exon 4 of 4)	16761	NM_006938	6632		NM_006938	ENSG00000167088	SNRPD1	HsT2456|SMD1|SNRPD|Sm-D1	small nuclear ribonucleoprotein D1 polypeptide	protein-coding
16336	chr1	154267201	154267900	+	0	NA	intron (NM_001375615, intron 25 of 27)	AluJo|SINE|Alu	-5079	NM_001018837	10456		NM_006118	ENSG00000143575	HAX1	HCLSBP1|HS1BP1|SCN3	HCLS1 associated protein X-1	protein-coding
164138	chr3	56751321	56751880	+	0	NA	intron (NM_001289698, intron 5 of 10)	intron (NM_001289698, intron 5 of 10)	24117	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
172168	chr4	1224971	1225480	+	0	NA	intron (NM_001377193, intron 5 of 9)	CpG	15105	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
74947	chr15	63789571	63789730	+	0	NA	intron (NM_003922, intron 1 of 77)	AluSx1|SINE|Alu	44298	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
197943	chr6	89910671	89910830	+	0	NA	Intergenic	Intergenic	16281	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
65238	chr14	49869371	49869530	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6601	NR_027260	378706		NR_027260	ENSG00000274012	RN7SL2	7L1C|7L30.1|7SL1c|RNSRP2	RNA component of signal recognition particle 7SL2	scRNA
89816	chr16	89564871	89565030	+	0	NA	TTS (NM_000977)	TTS (NM_000977)	3520	NR_002450	606500		NR_002450		SNORD68	HBII-202	small nucleolar RNA, C/D box 68	snoRNA
35107	chr11	646021	646750	+	0	NA	intron (NM_001367390, intron 11 of 11)	intron (NM_001367390, intron 11 of 11)	9116	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
182420	chr5	61405921	61406330	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	73867	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
157602	chr22	46013051	46014850	+	0	NA	Intergenic	Intergenic	7334	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
59195	chr13	22126571	22126930	+	0	NA	Intergenic	Intergenic	-83535	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
211549	chr7	105447971	105448530	+	0	NA	Intergenic	Intergenic	-58860	NM_001350740	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
109900	chr19	1279571	1280350	+	0	NA	TTS (NM_017914)	TTS (NM_017914)	4430	NM_017914	55009		NM_017914	ENSG00000228300	FAM174C	C19orf24	family with sequence similarity 174 member C	protein-coding
52347	chr12	55072071	55072480	+	0	NA	Intergenic	LTR28B|LTR|ERV1	52301	NM_021191	58158		NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding
125105	chr2	9751251	9751350	+	0	NA	Intergenic	LTR78|LTR|ERV1	-92142	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
237450	chrX	119690811	119691400	+	0	NA	intron (NM_145799, intron 1 of 10)	intron (NM_145799, intron 1 of 10)	2063	NM_145799	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
23969	chr1	235164501	235165100	+	0	NA	Intergenic	Intergenic	-3550	NR_144491	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
123846	chr19	55236171	55236730	+	0	NA	intron (NM_014931, intron 17 of 23)	intron (NM_014931, intron 17 of 23)	3526	NR_106860	102465481		NR_106860	ENSG00000278328	MIR6802	hsa-mir-6802	microRNA 6802	ncRNA
196104	chr6	42366901	42367800	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	84701	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
61792	chr13	75324071	75324230	+	0	NA	intron (NM_014832, intron 11 of 20)	intron (NM_014832, intron 11 of 20)	83562	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
136855	chr2	186491251	186492080	+	0	NA	intron (NM_018471, intron 1 of 9)	MIR|SINE|MIR	5405	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
209156	chr7	75179371	75179880	+	0	NA	Intergenic	AluSx1|SINE|Alu	-7627	NR_003187	654817		NR_003187	ENSG00000165178	NCF1C	SH3PXD1C	neutrophil cytosolic factor 1C (pseudogene)	pseudo
86609	chr16	67349271	67349580	+	0	NA	intron (NM_001161575, intron 1 of 10)	intron (NM_001161575, intron 1 of 10)	2070	NM_001161575	55282		NM_018296	ENSG00000159708	LRRC36	RORBP70|XLHSRF2	leucine rich repeat containing 36	protein-coding
157952	chr22	49803071	49804330	+	0	NA	intron (NR_146335, intron 4 of 13)	intron (NR_146335, intron 4 of 13)	20631	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
59408	chr13	25276771	25276930	+	0	NA	intron (NR_169592, intron 1 of 13)	MIR|SINE|MIR	10638	NM_001385233	9107		NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
233095	chr9	137112171	137112880	+	0	NA	intron (NM_013379, intron 8 of 12)	intron (NM_013379, intron 8 of 12)	2208	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
225737	chr9	37032521	37033200	+	0	NA	intron (NR_103999, intron 1 of 8)	intron (NR_103999, intron 1 of 8)	1408	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
109650	chr19	1006151	1006980	+	0	NA	intron (NM_138690, intron 3 of 8)	AluSx|SINE|Alu	6146	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
10749	chr1	76292421	76292750	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	217839	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
59160	chr13	21595151	21595730	+	0	NA	intron (NM_152726, intron 1 of 11)	intron (NM_152726, intron 1 of 11)	8730	NM_152726	221154		NM_152726	ENSG00000165487	MICU2	1110008L20Rik|EFHA1	mitochondrial calcium uptake 2	protein-coding
220469	chr8	100432421	100432680	+	0	NA	Intergenic	Intergenic	49787	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
226281	chr9	68315621	68316100	+	0	NA	Intergenic	SATR2|Satellite|Satellite	12993	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
169834	chr3	177161001	177161200	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	35378	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
205048	chr7	6575851	6575950	+	0	NA	Intergenic	AluJr|SINE|Alu	-1534	NM_001134387	55146		NM_018106	ENSG00000136247	ZDHHC4	ZNF374	zinc finger DHHC-type palmitoyltransferase 4	protein-coding
9684	chr1	52919001	52919930	+	0	NA	intron (NM_001319958, intron 1 of 9)	Tigger3c|DNA|TcMar-Tigger	2275	NM_018281	55268		NM_018281	ENSG00000121310	ECHDC2	-	enoyl-CoA hydratase domain containing 2	protein-coding
134644	chr2	144437701	144437900	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-81814	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
60243	chr13	40574471	40574630	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	92091	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
68820	chr14	91264101	91265530	+	0	NA	Intergenic	Intergenic	-10935	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
70047	chr14	100118551	100118850	+	0	NA	intron (NM_016337, intron 3 of 13)	intron (NM_016337, intron 3 of 13)	9045	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
158148	chr22	50185221	50188150	+	0	NA	intron (NM_001378762, intron 1 of 9)	CpG-19333	772	NM_001320484	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
56375	chr12	113160521	113160780	+	0	NA	intron (NM_001111322, intron 19 of 19)	intron (NM_001111322, intron 19 of 19)	-1473	NR_106956	102466222		NR_106956	ENSG00000276908	MIR7106	hsa-mir-7106	microRNA 7106	ncRNA
80361	chr16	2516321	2516730	+	0	NA	intron (NM_001198569, intron 2 of 3)	intron (NM_001198569, intron 2 of 3)	2573	NM_001694	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
163675	chr3	52232851	52233530	+	0	NA	intron (NM_007284, intron 2 of 8)	intron (NM_007284, intron 2 of 8)	5968	NM_007284	11344		NM_007284	ENSG00000247596	TWF2	A6RP|A6r|MSTP011|PTK9L	twinfilin actin binding protein 2	protein-coding
57226	chr12	121529951	121530050	+	0	NA	intron (NM_001005366, intron 8 of 22)	AluY|SINE|Alu	50246	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
3928	chr1	17435901	17436750	+	0	NA	intron (NM_018715, intron 2 of 12).2	AluSz6|SINE|Alu	2211	NM_001136204	55920		NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding
56423	chr12	113332051	113332350	+	0	NA	intron (NR_152403, intron 2 of 15)	L2a|LINE|L2	2909	NM_001330466	80024		NM_024959	ENSG00000089060	SLC8B1	NCKX6|NCLX|SLC24A6	solute carrier family 8 member B1	protein-coding
92588	chr17	9242401	9243200	+	0	NA	3' UTR (NM_004822, exon 7 of 7)	3' UTR (NM_004822, exon 7 of 7)	-63682	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
86063	chr16	57590651	57591680	+	0	NA	Intergenic	MIRc|SINE|MIR	-28573	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
94191	chr17	28569701	28569900	+	0	NA	intron (NM_033198, intron 3 of 11)	MIR|SINE|MIR	1724	NM_033198	94005		NM_033198	ENSG00000087111	PIGS	DEE95|GPIBD18|PIG-S	phosphatidylinositol glycan anchor biosynthesis class S	protein-coding
28920	chr10	63173601	63174300	+	0	NA	intron (NM_001322258, intron 23 of 24)	L1ME1|LINE|L1	40622	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
92312	chr17	8128471	8129400	+	0	NA	Intergenic	AluSg|SINE|Alu	-4829	NM_001165967	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
175139	chr4	55399801	55400030	+	0	NA	intron (NM_018475, intron 1 of 5)	intron (NM_018475, intron 1 of 5)	3958	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
71932	chr15	22939751	22939850	+	0	NA	intron (NM_001324120, intron 6 of 30)	intron (NM_001324120, intron 6 of 30)	-22487	NM_001033028	23191		NM_014608	ENSG00000273749	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
207276	chr7	43981601	43982150	+	0	NA	intron (NR_003655, intron 7 of 15)	LTR33|LTR|ERVL	-15993	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
32211	chr10	101785821	101786300	+	0	NA	3' UTR (NM_012215, exon 16 of 16)	3' UTR (NM_012215, exon 16 of 16)	-2647	NM_006993	10360		NM_006993	ENSG00000107833	NPM3	PORMIN|TMEM123	nucleophosmin/nucleoplasmin 3	protein-coding
110726	chr19	2318371	2318530	+	0	NA	Intergenic	AluJr|SINE|Alu	10136	NM_016199	51690		NM_016199	ENSG00000130332	LSM7	YNL147W	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
222465	chr8	139804251	139804550	+	0	NA	intron (NM_001374684, intron 20 of 21)	(CAC)n|Simple_repeat|Simple_repeat	-101277	NM_001282534	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
21723	chr1	206781351	206781650	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-9006	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
63869	chr14	21724271	21724430	+	0	NA	Intergenic	Intergenic	-53333	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
72421	chr15	31448621	31448880	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	121915	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
64619	chr14	30969901	30970100	+	0	NA	intron (NM_014574, intron 1 of 15)	HERVIP10FH-int|LTR|ERV1	44742	NR_030354	693209		NR_030354	ENSG00000207952	MIR624	MIRN624|hsa-mir-624|mir-624	microRNA 624	ncRNA
94898	chr17	31557701	31557980	+	0	NA	Intergenic	Intergenic	-2156	NR_029710	406968		NR_029710	ENSG00000207614	MIR193A	MIRN193|MIRN193A|mir-193a	microRNA 193a	ncRNA
196472	chr6	43569351	43569650	+	0	NA	intron (NR_144392, intron 5 of 32)	AluSx1|SINE|Alu	6538	NM_020750	57510		NM_020750	ENSG00000124571	XPO5	exp5	exportin 5	protein-coding
105582	chr18	179501	179780	+	0	NA	intron (NM_005151, intron 4 of 15)	AluJr4|SINE|Alu	21083	NM_005151	9097		NM_005151	ENSG00000101557	USP14	TGT|Ubp6	ubiquitin specific peptidase 14	protein-coding
135228	chr2	159285151	159285450	+	0	NA	intron (NM_001330280, intron 1 of 9)	intron (NM_001330280, intron 1 of 9)	1403	NM_001330278	151525		NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
17632	chr1	157124851	157125380	+	0	NA	exon (NM_001145312, exon 5 of 5)	exon (NM_001145312, exon 5 of 5)	-3247	NR_001560	360155		NR_001560	ENSG00000235700	CYCSP52	HC6|HCP2	CYCS pseudogene 52	pseudo
48681	chr12	10562221	10562880	+	0	NA	intron (NR_146456, intron 1 of 2)	intron (NR_146456, intron 1 of 2)	9171	NR_146456	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
16907	chr1	155877621	155877880	+	0	NA	intron (NM_152280, intron 2 of 3)	AluY|SINE|Alu	18183	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
213596	chr7	139386001	139386550	+	0	NA	intron (NM_016019, intron 2 of 9)	AluSx1|SINE|Alu	26381	NM_016019	51631		NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding
33682	chr10	119896271	119896430	+	0	NA	intron (NR_037771, intron 1 of 17)	L2|LINE|L2	3620	NM_007190	11196		NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A|iPLA1A|iPLA1beta	SEC23 interacting protein	protein-coding
21188	chr1	203810371	203810530	+	0	NA	intron (NM_001376350, intron 2 of 17)	AluY|SINE|Alu	12927	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
234629	chrX	19882821	19883250	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	4565	NM_001353891	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
104627	chr17	81434251	81434350	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	16888	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
211988	chr7	113533751	113533950	+	0	NA	Intergenic	L1PA2|LINE|L1	385159	NM_002711	5506		NM_002711	ENSG00000154415	PPP1R3A	GM|PP1G|PPP1R3	protein phosphatase 1 regulatory subunit 3A	protein-coding
121899	chr19	48390171	48391000	+	0	NA	intron (NM_006801, intron 1 of 4)	GA-rich|Low_complexity|Low_complexity	966	NM_006801	10945		NM_006801	ENSG00000105438	KDELR1	ERD2|ERD2.1|HDEL|PM23	KDEL endoplasmic reticulum protein retention receptor 1	protein-coding
196565	chr6	44124721	44124980	+	0	NA	intron (NM_001318767, intron 1 of 2)	intron (NM_001318767, intron 1 of 2)	1417	NM_001318770	64928		NM_032111	ENSG00000180992	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32|uL14m	mitochondrial ribosomal protein L14	protein-coding
125564	chr2	15965651	15966350	+	0	NA	Intergenic	Intergenic	-23567	NR_161163	10408		NR_110230	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	ncRNA
22316	chr1	213808271	213808430	+	0	NA	Intergenic	L1P1|LINE|L1	-116399	NR_046189	100861504		NR_046189		LINC00538	PROX1UT|Yiya	long intergenic non-protein coding RNA 538	ncRNA
215202	chr7	155803601	155804400	+	0	NA	intron (NM_000193, intron 2 of 2)	CpG	5163	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
36228	chr11	3639051	3640030	+	0	NA	intron (NM_001297668, intron 2 of 3)	intron (NM_001297668, intron 2 of 3)	2452	NM_001297668	116969		NM_053017	ENSG00000167311	ART5	ARTC5	ADP-ribosyltransferase 5	protein-coding
224338	chr9	6771771	6772200	+	0	NA	intron (NR_148677, intron 1 of 21)	intron (NR_148677, intron 1 of 21)	14012	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
111524	chr19	4013471	4013630	+	0	NA	intron (NM_015897, intron 2 of 10)	MLT1F|LTR|ERVL-MaLR	5814	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
214058	chr7	143385421	143386650	+	0	NA	intron (NM_001362783, intron 4 of 8).2	(TG)n|Simple_repeat|Simple_repeat	3349	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
172196	chr4	1253451	1254380	+	0	NA	TTS (NR_033339)	TTS (NR_033339)	-3560	NM_001377192	1487		NM_001328	ENSG00000159692	CTBP1	BARS|HADDTS	C-terminal binding protein 1	protein-coding
126311	chr2	27279721	27280580	+	0	NA	intron (NM_173650, intron 5 of 6)	intron (NM_173650, intron 5 of 6)	-2279	NM_187841	57159		NM_032546	ENSG00000138100	TRIM54	MURF|MURF-3|RNF30|muRF3	tripartite motif containing 54	protein-coding
218918	chr8	60798071	60798440	+	0	NA	intron (NM_017780, intron 4 of 37)	intron (NM_017780, intron 4 of 37)	56996	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
76418	chr15	74780811	74781300	+	0	NA	Intergenic	Intergenic	-1025	NM_001127190	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
25889	chr10	11267971	11268330	+	0	NA	intron (NM_001326330, intron 6 of 12)	intron (NM_001326330, intron 6 of 12)	76524	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
93547	chr17	19065471	19065630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1414	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
21881	chr1	207797151	207797930	+	0	NA	Intergenic	Intergenic	4399	NR_029832	407026		NR_029832	ENSG00000284214	MIR29C	MIRN29C|miRNA29C|mir-29c	microRNA 29c	ncRNA
222572	chr8	140626051	140626800	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	9208	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
150378	chr21	42258501	42259130	+	0	NA	intron (NM_207628, intron 4 of 16)	intron (NM_207628, intron 4 of 16)	38917	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
62004	chr13	81113951	81114130	+	0	NA	Intergenic	AluSz|SINE|Alu	95649	NR_125770	103724386		NR_125770		LINC00377	TCONS_00021861	long intergenic non-protein coding RNA 377	ncRNA
208571	chr7	72832901	72833300	+	0	NA	intron (NR_024111, intron 2 of 3)	L1MB7|LINE|L1	3727	NR_024110	155370		NR_001588	ENSG00000291152	SBDSP1	SBDSP	SBDS pseudogene 1	pseudo
118070	chr19	34345801	34346280	+	0	NA	intron (NM_014686, intron 10 of 13)	intron (NM_014686, intron 10 of 13)	-18700	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
166785	chr3	122506571	122506730	+	0	NA	intron (NM_002264, intron 1 of 13)	intron (NM_002264, intron 1 of 13)	8289	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
96874	chr17	42070901	42071330	+	0	NA	intron (NM_001378270, intron 1 of 8)	intron (NM_001378270, intron 1 of 8)	-20514	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
66530	chr14	61755051	61755680	+	0	NA	Intergenic	Intergenic	-4268	NR_144368	105370526		NR_144368	ENSG00000258667	HIF1A-AS3	HIFAL	HIF1A antisense RNA 3	ncRNA
211072	chr7	102474621	102474880	+	0	NA	intron (NM_001371100, intron 1 of 2)	intron (NM_001371100, intron 1 of 2)	3281	NR_039677	100616367		NR_039677	ENSG00000284596	MIR4467	-	microRNA 4467	ncRNA
8072	chr1	38995871	38996050	+	0	NA	intron (NM_001136275, intron 1 of 3)	AluSx1|SINE|Alu	4684	NM_024595	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
122024	chr19	48617451	48617780	+	0	NA	intron (NM_001270490, intron 1 of 5)	intron (NM_001270490, intron 1 of 5)	1563	NM_001270490	6141		NM_000979	ENSG00000063177	RPL18	DBA18|L18|eL18	ribosomal protein L18	protein-coding
149108	chr21	17510721	17510980	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2056	NM_001207066	1525		NM_001338	ENSG00000154639	CXADR	CAR|CAR4/6|HCAR	CXADR Ig-like cell adhesion molecule	protein-coding
112295	chr19	5851051	5851350	+	0	NA	intron (NR_110740, intron 1 of 3)	intron (NR_110740, intron 1 of 3)	249	NM_001374740	2525		NM_000149	ENSG00000171124	FUT3	CD174|FT3B|FucT-III|LE|Les	fucosyltransferase 3 (Lewis blood group)	protein-coding
239031	chrY	4954421	4954680	+	0	NA	Intergenic	L1HS|LINE|L1	-45746	NM_001278619	83259		NM_032971	ENSG00000099715	PCDH11Y	PCDH-PC|PCDH22|PCDHX|PCDHY	protocadherin 11 Y-linked	protein-coding
152215	chr22	20133871	20134680	+	0	NA	intron (NM_001185024, intron 1 of 10)	L2b|LINE|L2	2471	NM_013373	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
195916	chr6	41743221	41743480	+	0	NA	exon (NM_002630, exon 4 of 9)	exon (NM_002630, exon 4 of 9)	4047	NM_002630	5225		NM_002630	ENSG00000096088	PGC	PEPC|PGII	progastricsin	protein-coding
176159	chr4	83241071	83241630	+	0	NA	Intergenic	Intergenic	43448	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
45299	chr11	118145201	118146580	+	0	NA	promoter-TSS (NR_024527)	promoter-TSS (NR_024527)	-457	NM_001142349	6330		NM_174934	ENSG00000177098	SCN4B	ATFB17|LQT10|Navbeta4	sodium voltage-gated channel beta subunit 4	protein-coding
41291	chr11	65864321	65864900	+	0	NA	exon (NM_001350283, exon 11 of 16)	exon (NM_001350283, exon 11 of 16)	4177	NR_146598	80198		NM_025128	ENSG00000172732	MUS81	SLX3	MUS81 structure-specific endonuclease subunit	protein-coding
17106	chr1	156151421	156152130	+	0	NA	intron (NM_001370568, intron 1 of 13)	AluSz|SINE|Alu	-1803	NM_001193302	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
62246	chr13	98540751	98541050	+	0	NA	intron (NM_001286649, intron 1 of 9)	PABL_A|LTR|ERV1	-18775	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
167347	chr3	128759221	128759950	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	33402	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
170321	chr3	184358321	184358800	+	0	NA	intron (NM_001171088, intron 2 of 22)	intron (NM_001171088, intron 2 of 22)	3045	NM_001171089	1181		NM_004366	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|FHA2|FHII|HALD2|LKPAT|clC-2	chloride voltage-gated channel 2	protein-coding
177749	chr4	122577851	122579280	+	0	NA	Intergenic	Intergenic	-40418	NR_104126	100996941		NR_104126	ENSG00000227145	IL21-AS1	-	IL21 antisense RNA 1	ncRNA
31679	chr10	97447451	97447550	+	0	NA	intron (NR_109895, intron 1 of 8)	intron (NR_109895, intron 1 of 8)	1325	NM_198046	84287		NM_032327	ENSG00000171307	ZDHHC16	APH2|DHHC-16	zinc finger DHHC-type palmitoyltransferase 16	protein-coding
35671	chr11	1873771	1875050	+	0	NA	intron (NM_001013254, intron 1 of 10)	intron (NM_001013254, intron 1 of 10)	3486	NM_001013255	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
231498	chr9	131396671	131397100	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	2799	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
135769	chr2	169686621	169686880	+	0	NA	intron (NM_001085447, intron 1 of 8)	MSTC|LTR|ERVL-MaLR	7655	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
205767	chr7	23524271	23524900	+	0	NA	intron (NM_001362760, intron 1 of 8)	intron (NM_001362760, intron 1 of 8)	7396	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
238695	chrX	154072221	154072650	+	0	NA	intron (NM_001316337, intron 2 of 4)	L1MC5a|LINE|L1	24534	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
167223	chr3	128465551	128466050	+	0	NA	intron (NM_153330, intron 1 of 2)	(TGGTGA)n|Simple_repeat|Simple_repeat	1448	NM_153330	165721		NM_153330	ENSG00000179407	DNAJB8	CT156|DJ6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding
130437	chr2	85412721	85412980	+	0	NA	intron (NM_001256139, intron 1 of 9)	MIRc|SINE|MIR	1224	NM_001256139	822		NM_001747	ENSG00000042493	CAPG	AFCP|HEL-S-66|MCP	capping actin protein, gelsolin like	protein-coding
239304	chrY	15455871	15456580	+	0	NA	Intergenic	CpG	-652192	NR_046504	100874056		NR_046504	ENSG00000228787	NLGN4Y-AS1	NLGN4Y-AS|NLGN4YAS	NLGN4Y antisense RNA 1	ncRNA
190558	chr5	180801871	180803400	+	0	NA	intron (NR_157150, intron 1 of 1)	CpG	171	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
200439	chr6	135030001	135031350	+	0	NA	intron (NM_001363686, intron 4 of 18)	intron (NM_001363686, intron 4 of 18)	24147	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
162392	chr3	48158101	48158380	+	0	NA	3' UTR (NM_201567, exon 14 of 14)	3' UTR (NM_201567, exon 14 of 14)	30177	NM_001789	993		NM_001789	ENSG00000164045	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
46008	chr11	121588771	121589130	+	0	NA	intron (NM_003105, intron 28 of 47)	MLT1B|LTR|ERVL-MaLR	-107161	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
146945	chr20	52105071	52105480	+	0	NA	5' UTR (NM_001319146, exon 1 of 5)	5' UTR (NM_001319146, exon 1 of 5)	209	NM_001319146	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
144804	chr20	36717651	36717980	+	0	NA	intron (NR_038370, intron 2 of 13)	MER20|DNA|hAT-Charlie	28275	NM_022477	57446		NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding
130896	chr2	87441051	87442030	+	0	NA	Intergenic	Intergenic	-13887	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
181305	chr5	40223801	40224530	+	0	NA	Intergenic	Intergenic	171874	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
145090	chr20	38685871	38686100	+	0	NA	Intergenic	Intergenic	-38501	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
81594	chr16	10382321	10382700	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-3551	NM_024997	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
98453	chr17	47066171	47066400	+	0	NA	Intergenic	HERVIP10FH-int|LTR|ERV1	-87032	NM_203400	388394		NM_203400	ENSG00000179673	RPRML	-	reprimo like	protein-coding
224523	chr9	19156021	19156400	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-28604	NR_038064	123		NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
100108	chr17	58327701	58328400	+	0	NA	promoter-TSS (NR_038411)	promoter-TSS (NR_038411)	745	NM_024418	9256		NM_004758	ENSG00000005379	TSPOAP1	BZRAP1|DYT22|PBR-IP|PRAX-1|PRAX1|RIM-BP1|RIMBP1	TSPO associated protein 1	protein-coding
111979	chr19	4870921	4871180	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3383	NM_001164189	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
222343	chr8	133545151	133545450	+	0	NA	intron (NM_173344, intron 2 of 9)	MER58A|DNA|hAT-Charlie	26587	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
101795	chr17	73228321	73229430	+	0	NA	intron (NM_032837, intron 1 of 2)	intron (NM_032837, intron 1 of 2)	-1158	NM_001289412	84923		NM_032837	ENSG00000133193	VCF1	FAM104A	VCP nuclear cofactor family member 1	protein-coding
73278	chr15	41852621	41853450	+	0	NA	intron (NM_016642, intron 59 of 67)	intron (NM_016642, intron 59 of 67)	13516	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
169882	chr3	177427021	177428100	+	0	NA	Intergenic	Intergenic	-14361	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
198844	chr6	109362401	109362600	+	0	NA	Intergenic	L1MEc|LINE|L1	19239	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
205510	chr7	18241551	18241850	+	0	NA	intron (NM_001321868, intron 2 of 25)	intron (NM_001321868, intron 2 of 25)	-48392	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
155091	chr22	37568871	37569030	+	0	NA	3' UTR (NM_152243, exon 3 of 3)	3' UTR (NM_152243, exon 3 of 3)	8470	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
115011	chr19	14069771	14070130	+	0	NA	Intergenic	Intergenic	-2836	NM_001291291	113230		NM_001291291	ENSG00000141854	MISP3	-	MISP family member 3	protein-coding
204396	chr7	3039771	3040450	+	0	NA	intron (NM_001324281, intron 1 of 25)	MIRc|SINE|MIR	3757	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
192626	chr6	26122121	26123400	+	0	NA	TTS (NM_003526)	TTS (NM_003526)	1166	NM_001381989	8347		NM_003526	ENSG00000180596	H2BC4	H2B.1|H2B/l|H2BC10|H2BC6|H2BC7|H2BC8|H2BFL|HIST1H2BC|dJ221C16.3	H2B clustered histone 4	protein-coding
187493	chr5	142225101	142225300	+	0	NA	Intergenic	AluJo|SINE|Alu	93122	NR_131221	100642175		NR_131221		SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
42166	chr11	67802151	67802850	+	0	NA	intron (NR_024249, intron 2 of 3)	intron (NR_024249, intron 2 of 3)	2836	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
220045	chr8	92965251	92966230	+	0	NA	promoter-TSS (NM_001191036)	promoter-TSS (NM_001191036)	-151	NM_001191036	286144		NM_001171795	ENSG00000205133	TRIQK	C8orf83|PRO0845|UPF0599	triple QxxK/R motif containing	protein-coding
222227	chr8	133082771	133083130	+	0	NA	intron (NM_001045556, intron 1 of 8)	intron (NM_001045556, intron 1 of 8)	19652	NM_001282964	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
41562	chr11	66324351	66324650	+	0	NA	Intergenic	Intergenic	-7456	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
12031	chr1	97827971	97828130	+	0	NA	intron (NM_001160301, intron 3 of 5)	intron (NM_001160301, intron 3 of 5)	31129	NR_046591	100873933		NR_046591	ENSG00000235777	DPYD-AS2	-	DPYD antisense RNA 2	ncRNA
127997	chr2	46982521	46982780	+	0	NA	intron (NM_020458, intron 5 of 19)	intron (NM_020458, intron 5 of 19)	-40795	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
209203	chr7	75427221	75428680	+	0	NA	intron (NM_001099415, intron 7 of 14)	intron (NM_001099415, intron 7 of 14)	17628	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
13096	chr1	111605621	111605980	+	0	NA	intron (NR_034126, intron 1 of 4)	intron (NR_034126, intron 1 of 4)	2518	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
130868	chr2	87405371	87405530	+	0	NA	Intergenic	AluSx3|SINE|Alu	-49977	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
172576	chr4	2467151	2467450	+	0	NA	Intergenic	AluJb|SINE|Alu	-1806	NM_002938	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
219815	chr8	81590901	81591100	+	0	NA	Intergenic	Charlie14a|DNA|hAT-Charlie	40277	NR_146081	650747		NR_146081		IMPA1P1	IMPA1P	inositol monophosphatase 1 pseudogene 1	pseudo
208191	chr7	64946821	64947100	+	0	NA	Intergenic	Intergenic	43687	NM_001385650	10793		NM_021148	ENSG00000198039	ZNF273	HZF9	zinc finger protein 273	protein-coding
222192	chr8	133041571	133042700	+	0	NA	intron (NM_001282964, intron 5 of 6)	MIRb|SINE|MIR	4446	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
193433	chr6	30476971	30477530	+	0	NA	Intergenic	AluY|SINE|Alu	-12259	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
147563	chr20	60209171	60209330	+	0	NA	intron (NR_046099, intron 3 of 4)	intron (NR_046099, intron 3 of 4)	70758	NR_046099	284757		NM_001004305	ENSG00000228340	MIR646HG	-	MIR646 host gene	ncRNA
7462	chr1	33093171	33093330	+	0	NA	non-coding (NR_146649, exon 6 of 11)	non-coding (NR_146649, exon 6 of 11)	11072	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
15665	chr1	150923351	150923450	+	0	NA	Intergenic	AluY|SINE|Alu	-2863	NM_001366417	9869		NM_012432	ENSG00000143379	SETDB1	ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21	SET domain bifurcated histone lysine methyltransferase 1	protein-coding
69489	chr14	95503301	95503800	+	0	NA	intron (NM_001384283, intron 1 of 9)	intron (NM_001384283, intron 1 of 9)	-3010	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
213176	chr7	132437351	132438150	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	138720	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
95325	chr17	35733851	35734150	+	0	NA	intron (NM_033315, intron 1 of 3)	intron (NM_033315, intron 1 of 3)	2361	NM_033315	91608		NM_033315	ENSG00000270885	RASL10B	RRP17|VTS58635	RAS like family 10 member B	protein-coding
26011	chr10	12214601	12215200	+	0	NA	intron (NM_006023, intron 4 of 12)	intron (NM_006023, intron 4 of 12)	18712	NM_006023	8872		NM_006023	ENSG00000151465	CDC123	C10orf7|D123	cell division cycle 123	protein-coding
132738	chr2	109350451	109350550	+	0	NA	intron (NM_001099289, intron 2 of 9)	intron (NM_001099289, intron 2 of 9)	-36875	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	ncRNA
113670	chr19	10389871	10390130	+	0	NA	Intergenic	Intergenic	-9428	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
215300	chr7	157301071	157301230	+	0	NA	Intergenic	AluJb|SINE|Alu	-35854	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
78916	chr15	101199621	101200450	+	0	NA	intron (NM_014918, intron 2 of 2)	L2a|LINE|L2	52013	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
54920	chr12	96188801	96189400	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-5275	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
105534	chr17	83128451	83128900	+	0	NA	Intergenic	Intergenic	47529	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
43652	chr11	85664901	85665880	+	0	NA	promoter-TSS (NM_001039618)	promoter-TSS (NM_001039618)	-261	NR_165406	58487		NM_021212	ENSG00000137504	CREBZF	SMILE|ZF	CREB/ATF bZIP transcription factor	protein-coding
34508	chr10	132574051	132574680	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	36578	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
156808	chr22	41924951	41925370	+	0	NA	3' UTR (NM_052945, exon 3 of 3)	3' UTR (NM_052945, exon 3 of 3)	1646	NM_052945	115650		NM_052945	ENSG00000159958	TNFRSF13C	BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin	TNF receptor superfamily member 13C	protein-coding
162143	chr3	46959001	46960150	+	0	NA	intron (NM_144716, intron 2 of 7)	intron (NM_144716, intron 2 of 7)	16926	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
7735	chr1	36134521	36135080	+	0	NA	Intergenic	Intergenic	-9578	NM_001294347	1296		NM_005202	ENSG00000171812	COL8A2	FECD|FECD1|PPCD|PPCD2	collagen type VIII alpha 2 chain	protein-coding
204368	chr7	2956271	2957130	+	0	NA	intron (NM_032415, intron 2 of 24)	L1ME3E|LINE|L1	87167	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
95473	chr17	36195401	36195850	+	0	NA	intron (NM_002983, intron 1 of 1)	intron (NM_002983, intron 1 of 1)	681	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
222049	chr8	130263651	130264100	+	0	NA	intron (NM_001362924, intron 3 of 30)	MIRc|SINE|MIR	32658	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
15690	chr1	150978401	150978600	+	0	NA	Intergenic	Intergenic	-3497	NM_181746	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
49023	chr12	14284251	14284350	+	0	NA	Intergenic	Intergenic	-81332	NM_018179	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
20313	chr1	197400051	197400550	+	0	NA	intron (NM_201253, intron 5 of 11)	intron (NM_201253, intron 5 of 11)	132048	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
72320	chr15	31260551	31260650	+	0	NA	Intergenic	L1ME3A|LINE|L1	-29738	NM_001243538	283710		NM_001243538	ENSG00000259772	LINC03034	-	long intergenic non-protein coding RNA 3034	ncRNA
139752	chr2	229912101	229912300	+	0	NA	intron (NM_001348325, intron 1 of 42)	intron (NM_001348325, intron 1 of 42)	9479	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
76285	chr15	74133221	74133480	+	0	NA	exon (NM_020851, exon 3 of 3)	exon (NM_020851, exon 3 of 3)	2764	NM_020851	57611		NM_020851	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine rich repeat 2	protein-coding
80495	chr16	2713751	2713850	+	0	NA	intron (NM_001318395, intron 3 of 4)	intron (NM_001318395, intron 3 of 4)	6424	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
55908	chr12	109733051	109733630	+	0	NA	TTS (NR_026661)	TTS (NR_026661)	19515	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
80801	chr16	3364671	3365750	+	0	NA	Intergenic	Intergenic	7458	NM_001190476	100463285		NM_001190476		MTRNR2L4	HN4	MT-RNR2 like 4 (pseudogene)	pseudo
64657	chr14	31544171	31544550	+	0	NA	Intergenic	MER77B|LTR|ERVL	-17044	NM_025152	80224		NM_025152	ENSG00000151413	NUBPL	C14orf127|IND1|MC1DN21|huInd1	NUBP iron-sulfur cluster assembly factor, mitochondrial	protein-coding
135835	chr2	170711801	170712480	+	0	NA	TTS (NR_027433)	TTS (NR_027433)	2427	NR_027433	440925		NM_001013712	ENSG00000222033	LINC01124	-	long intergenic non-protein coding RNA 1124	ncRNA
116780	chr19	18509471	18510630	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	12020	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
217925	chr8	38072971	38073380	+	0	NA	Intergenic	Intergenic	-32318	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
35520	chr11	1559031	1559950	+	0	NA	intron (NM_004420, intron 3 of 6)	intron (NM_004420, intron 3 of 6)	12781	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
168075	chr3	138171621	138172200	+	0	NA	intron (NM_016216, intron 2 of 7)	intron (NM_016216, intron 2 of 7)	3011	NM_016216	51163		NM_016216	ENSG00000138231	DBR1	XGIP	debranching RNA lariats 1	protein-coding
38651	chr11	46372851	46373380	+	0	NA	intron (NM_001199266, intron 14 of 30)	intron (NM_001199266, intron 14 of 30)	-3287	NR_039837	100616368		NR_039837	ENSG00000264102	MIR4688	mir-4688	microRNA 4688	ncRNA
119583	chr19	40693321	40693780	+	0	NA	intron (NM_001142555, intron 12 of 13)	intron (NM_001142555, intron 12 of 13)	-2899	NM_001289979	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
22028	chr1	210331671	210332590	+	0	NA	intron (NM_001170580, intron 1 of 11).2	Charlie3|DNA|hAT-Charlie	2764	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
63309	chr13	113994621	113995350	+	0	NA	intron (NM_001320822, intron 21 of 23).2	AluJb|SINE|Alu	-20909	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
226757	chr9	76414671	76415100	+	0	NA	Intergenic	MER41B|LTR|ERV1	16286	NR_026890	653162		NR_026890		RPSAP9	LAMR1P9|RPSA_20_986	ribosomal protein SA pseudogene 9	pseudo
150219	chr21	39867251	39867350	+	0	NA	promoter-TSS (NM_006198)	promoter-TSS (NM_006198)	-138	NM_006198	5121		NM_006198	ENSG00000183036	PCP4	PEP-19	Purkinje cell protein 4	protein-coding
110299	chr19	1835621	1836230	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	12558	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
108941	chr18	79489001	79489400	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	88901	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
122942	chr19	50715821	50716080	+	0	NA	intron (NM_016148, intron 3 of 23)	intron (NM_016148, intron 3 of 23)	3852	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
80460	chr16	2685771	2686800	+	0	NA	intron (NM_018992, intron 1 of 5)	intron (NM_018992, intron 1 of 5)	3762	NM_018992	54442		NM_018992	ENSG00000167977	KCTD5	-	potassium channel tetramerization domain containing 5	protein-coding
67327	chr14	69630901	69631480	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	19594	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
50020	chr12	42483621	42484980	+	0	NA	promoter-TSS (NM_001144882)	promoter-TSS (NM_001144882)	-290	NM_001144883	144165		NM_153026	ENSG00000139174	PRICKLE1	EPM1B|RILP	prickle planar cell polarity protein 1	protein-coding
227147	chr9	86298821	86299080	+	0	NA	intron (NM_024617, intron 26 of 26)	intron (NM_024617, intron 26 of 26)	-16412	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
4925	chr1	23910201	23910400	+	0	NA	intron (NM_001841, intron 1 of 1)	MIR|SINE|MIR	3062	NM_001841	1269		NM_001841	ENSG00000188822	CNR2	CB-2|CB2|CX5	cannabinoid receptor 2	protein-coding
202435	chr6	157981001	157983750	+	0	NA	intron (NM_003898, intron 1 of 26)	CpG	512	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
231466	chr9	131308101	131308750	+	0	NA	3' UTR (NM_032728, exon 2 of 2)	3' UTR (NM_032728, exon 2 of 2)	18702	NM_032728	84814		NM_032728	ENSG00000160539	PLPP7	C9orf67|NET39|PPAPDC3	phospholipid phosphatase 7 (inactive)	protein-coding
80108	chr16	2022721	2024100	+	0	NA	Intergenic	Intergenic	-3492	NM_004785	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
174023	chr4	26723151	26723850	+	0	NA	intron (NM_001292054, intron 12 of 17)	LTR84b|LTR|ERVL	136744	NR_134675	105374546		NR_134673		STIM2-AS1	-	STIM2 antisense RNA 1	ncRNA
67129	chr14	68628301	68629350	+	0	NA	promoter-TSS (NR_135816)	promoter-TSS (NR_135816)	-38	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
175425	chr4	71002951	71003330	+	0	NA	intron (NM_000788, intron 2 of 6)	L1P3|LINE|L1	9491	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
143302	chr20	25310121	25311250	+	0	NA	intron (NM_001042472, intron 6 of 12)	G-rich|Low_complexity|Low_complexity	62600	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
3081	chr1	12188721	12189680	+	0	NA	intron (NM_001066, intron 2 of 9)	L2c|LINE|L2	-2513	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
114291	chr19	11694471	11695280	+	0	NA	Intergenic	CpG	20877	NR_028594	401898		NM_001013691		ZNF833P	ZNF833	zinc finger protein 833, pseudogene	pseudo
154211	chr22	31498801	31499400	+	0	NA	intron (NM_001258326, intron 1 of 30)	AluJo|SINE|Alu	2564	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
63107	chr13	113306651	113306950	+	0	NA	intron (NM_005561, intron 2 of 8)	intron (NM_005561, intron 2 of 8)	9561	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
33238	chr10	114195071	114195330	+	0	NA	intron (NM_198795, intron 3 of 25)	L1MD1|LINE|L1	15847	NM_001365891	56165		NM_031278	ENSG00000095627	TDRD1	CT41.1	tudor domain containing 1	protein-coding
187215	chr5	140707671	140708280	+	0	NA	Intergenic	Intergenic	-3301	NR_026703	56664		NR_026703	ENSG00000199990	VTRNA1-1	HVG1|VAULTRC1|VR1|hvg-1|vRNA	vault RNA 1-1	ncRNA
142664	chr20	5911201	5911810	+	0	NA	promoter-TSS (NM_001819)	promoter-TSS (NM_001819)	-5	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
60012	chr13	32529721	32529980	+	0	NA	intron (NM_001278432, intron 2 of 9)	AluSx|SINE|Alu	8945	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
101822	chr17	73590371	73590600	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	53960	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
48799	chr12	11978851	11979350	+	0	NA	Intergenic	Intergenic	-70761	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
180130	chr5	1320921	1321180	+	0	NA	intron (NM_030782, intron 15 of 16)	intron (NM_030782, intron 15 of 16)	-11673	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
111946	chr19	4795951	4796250	+	0	NA	3' UTR (NM_018708, exon 1 of 1)	3' UTR (NM_018708, exon 1 of 1)	4366	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
4977	chr1	24191071	24191230	+	0	NA	Intergenic	Intergenic	-3861	NM_170743	163702		NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	interferon lambda receptor 1	protein-coding
170545	chr3	186779271	186779630	+	0	NA	Intergenic	Intergenic	-4127	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
109833	chr19	1189401	1190380	+	0	NA	Intergenic	AluSq2|SINE|Alu	-15622	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
11875	chr1	93144371	93144730	+	0	NA	Intergenic	AluSx1|SINE|Alu	35863	NR_030761	50999		NM_016040	ENSG00000117500	TMED5	CGI-100|p24g2|p28	transmembrane p24 trafficking protein 5	protein-coding
4349	chr1	20657151	20657450	+	0	NA	intron (NM_005216, intron 2 of 10)	L2a|LINE|L2	4069	NM_005216	1650		NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein-coding
26640	chr10	22505871	22506780	+	0	NA	Intergenic	Intergenic	-68396	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
144210	chr20	34339671	34340030	+	0	NA	Intergenic	AluY|SINE|Alu	-23423	NM_001257138	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
92152	chr17	7656501	7656700	+	0	NA	3' UTR (NM_001678, exon 7 of 7)	3' UTR (NM_001678, exon 7 of 7)	5674	NM_001678	482		NM_001678	ENSG00000129244	ATP1B2	AMOG	ATPase Na+/K+ transporting subunit beta 2	protein-coding
33989	chr10	124670471	124671230	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-33178	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
43917	chr11	90212421	90212680	+	0	NA	intron (NM_001144073, intron 3 of 9)	AluJo|SINE|Alu	10499	NM_012124	26973		NM_012124	ENSG00000110172	CHORDC1	CHP1	cysteine and histidine rich domain containing 1	protein-coding
91556	chr17	5046771	5046930	+	0	NA	Intergenic	AluY|SINE|Alu	-11418	NM_001104577	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
46173	chr11	123111251	123111590	+	0	NA	intron (NM_024769, intron 1 of 6)	AluSx|SINE|Alu	-49284	NM_153201	3312		NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding
112413	chr19	6211971	6212130	+	0	NA	3' UTR (NM_005934, exon 12 of 12)	3' UTR (NM_005934, exon 12 of 12)	67925	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
90304	chr17	1063151	1064300	+	0	NA	intron (NM_001282149, intron 5 of 17).3	intron (NM_001282149, intron 5 of 17).3	15268	NM_001282149	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
152493	chr22	20921671	20922480	+	0	NA	intron (NR_156180, intron 1 of 3)	AluSc|SINE|Alu	4668	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
115884	chr19	16576271	16576430	+	0	NA	exon (NM_004831, exon 3 of 3)	exon (NM_004831, exon 3 of 3)	-3935	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
68005	chr14	75022671	75022950	+	0	NA	intron (NM_014381, intron 10 of 11)	intron (NM_014381, intron 10 of 11)	19889	NM_014239	8892		NM_014239	ENSG00000119718	EIF2B2	EIF-2Bbeta|EIF2B|EIF2Bbeta|VWM2	eukaryotic translation initiation factor 2B subunit beta	protein-coding
142763	chr20	10550301	10550700	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	99195	NR_106930	102465525		NR_106930	ENSG00000273745	MIR6870	hsa-mir-6870	microRNA 6870	ncRNA
148681	chr21	6153071	6153650	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	42229	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
199659	chr6	122442971	122443130	+	0	NA	TTS (NM_020755)	TTS (NM_020755)	28757	NM_020755	57515		NM_020755	ENSG00000111897	SERINC1	TDE1L|TDE2|TMS-2|TMS2	serine incorporator 1	protein-coding
75631	chr15	67175571	67175950	+	0	NA	intron (NM_001145104, intron 3 of 6)	intron (NM_001145104, intron 3 of 6)	9605	NM_001145104	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
177776	chr4	122811601	122811800	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-15008	NM_002006	2247		NM_002006	ENSG00000138685	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2	protein-coding
71639	chr14	106766701	106767380	+	0	NA	Intergenic	Intergenic	83959	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
136181	chr2	174492271	174492430	+	0	NA	Intergenic	AluSx|SINE|Alu	-5262	NM_001267051	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
165328	chr3	88028801	88029200	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	29996	NM_003663	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
188835	chr5	159104601	159104800	+	0	NA	intron (NR_109890, intron 1 of 2)	intron (NR_109890, intron 1 of 2)	4217	NR_109890	101927740		NR_109890	ENSG00000245812	LINC02202	-	long intergenic non-protein coding RNA 2202	ncRNA
17939	chr1	160337301	160337500	+	0	NA	intron (NM_001098398, intron 3 of 32)	L1M5|LINE|L1	5850	NM_001098398	1314		NM_004371	ENSG00000122218	COPA	AILJK|HEP-COP|alpha-COP	COPI coat complex subunit alpha	protein-coding
211196	chr7	102607671	102608380	+	0	NA	intron (NM_001079877, intron 4 of 19)	AluY|SINE|Alu	8731	NM_006989	10156		NM_006989	ENSG00000105808	RASA4	CAPRI|GAPL	RAS p21 protein activator 4	protein-coding
89191	chr16	88573271	88573630	+	0	NA	intron (NM_144604, intron 1 of 17)	intron (NM_144604, intron 1 of 17)	3047	NM_144604	124245		NM_144604	ENSG00000158545	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
158569	chr3	4518851	4519630	+	0	NA	intron (NM_002222, intron 3 of 57)	AluSc|SINE|Alu	25892	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
151610	chr22	11969171	11969330	+	0	NA	Intergenic	Intergenic	71844	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
111690	chr19	4272601	4272800	+	0	NA	Intergenic	Intergenic	-6369	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
64912	chr14	35413251	35413980	+	0	NA	Intergenic	Intergenic	-8866	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
21044	chr1	203117771	203118050	+	0	NA	Intergenic	Intergenic	-9816	NM_001365066	134		NM_000674	ENSG00000163485	ADORA1	RDC7	adenosine A1 receptor	protein-coding
53433	chr12	65156101	65157080	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-12993	NM_001167614	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
141611	chr2	241666921	241667380	+	0	NA	intron (NM_013325, intron 8 of 12)	intron (NM_013325, intron 8 of 12)	19665	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
191041	chr6	3224821	3225800	+	0	NA	exon (NM_178012, exon 4 of 4)	exon (NM_178012, exon 4 of 4)	2343	NM_178012	347733		NM_178012	ENSG00000137285	TUBB2B	CDCBM7|PMGYSA|bA506K6.1	tubulin beta 2B class IIb	protein-coding
199909	chr6	127869621	127870230	+	0	NA	intron (NM_001164687, intron 1 of 5).2	L1MDa|LINE|L1	-14737	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
140833	chr2	236618371	236618530	+	0	NA	Intergenic	Intergenic	48625	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
197457	chr6	75213901	75214100	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-7947	NM_080645	1303		NM_004370	ENSG00000111799	COL12A1	BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2	collagen type XII alpha 1 chain	protein-coding
83210	chr16	23597071	23597300	+	0	NA	promoter-TSS (NM_005003)	promoter-TSS (NM_005003)	-869	NM_005003	4706		NM_005003	ENSG00000004779	NDUFAB1	ACP|ACP1|FASN2A|SDAP	NADH:ubiquinone oxidoreductase subunit AB1	protein-coding
166553	chr3	115512301	115513660	+	0	NA	Intergenic	Intergenic	-110530	NM_002045	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
137538	chr2	197218471	197219430	+	0	NA	intron (NM_153697, intron 1 of 9)	AluSx1|SINE|Alu	20959	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
21552	chr1	206207971	206208130	+	0	NA	intron (NM_001377446, intron 2 of 21)	intron (NM_001377446, intron 2 of 21)	-2277	NM_001385243	729533		NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
169750	chr3	172523201	172524400	+	0	NA	promoter-TSS (NM_003810)	promoter-TSS (NM_003810)	-370	NM_003810	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
44102	chr11	95849171	95849330	+	0	NA	intron (NM_016156, intron 9 of 14)	intron (NM_016156, intron 9 of 14)	58752	NM_014679	9702		NM_014679	ENSG00000166037	CEP57	MVA2|PIG8|TSP57	centrosomal protein 57	protein-coding
235205	chrX	41352171	41353800	+	0	NA	intron (NR_126093, intron 17 of 18)	intron (NR_126093, intron 17 of 18)	18819	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
158680	chr3	5185171	5185600	+	0	NA	Intergenic	Intergenic	-2322	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
17288	chr1	156432901	156434100	+	0	NA	Intergenic	Intergenic	-3952	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
89898	chr16	89690871	89691030	+	0	NA	intron (NM_052987, intron 3 of 12)	intron (NM_052987, intron 3 of 12)	4261	NM_001098533	8558		NM_003674	ENSG00000185324	CDK10	ALSAS|PISSLRE	cyclin dependent kinase 10	protein-coding
113124	chr19	8307671	8308780	+	0	NA	TTS (NR_135539)	TTS (NR_135539)	133	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
172988	chr4	4227101	4227430	+	0	NA	promoter-TSS (NM_177998)	promoter-TSS (NM_177998)	-336	NM_177998	133060		NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
22156	chr1	212161471	212161730	+	0	NA	Intergenic	Intergenic	73136	NR_125983	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
80073	chr16	1987971	1988380	+	0	NA	TTS (NM_005262)	TTS (NM_005262)	-1795	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
51836	chr12	53459151	53459250	+	0	NA	intron (NM_031989, intron 5 of 14)	intron (NM_031989, intron 5 of 14)	-5268	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
8115	chr1	39213771	39214080	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	129758	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
105086	chr17	82110151	82110850	+	0	NA	intron (NM_001367828, intron 16 of 16)	intron (NM_001367828, intron 16 of 16)	-12264	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
144037	chr20	33554101	33554300	+	0	NA	intron (NM_001032999, intron 1 of 10)	intron (NM_001032999, intron 1 of 10)	-8165	NM_005093	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
72090	chr15	28915801	28916000	+	0	NA	intron (NM_001379685, intron 2 of 15)	(AC)n|Simple_repeat|Simple_repeat	-5737	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
37545	chr11	18698121	18699380	+	0	NA	promoter-TSS (NM_153347)	promoter-TSS (NM_153347)	-29	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
87637	chr16	74546421	74546880	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluSx1|SINE|Alu	60464	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
86902	chr16	68061371	68061730	+	0	NA	intron (NM_001271763, intron 6 of 14)	intron (NM_001271763, intron 6 of 14)	-23820	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
225128	chr9	33517301	33517900	+	0	NA	Intergenic	Intergenic	-6434	NR_003667	441394		NM_001007550		SUGT1P1	SGT1P|SUGT1P|bA255A11.1	SUGT1 pseudogene 1	pseudo
103775	chr17	78994521	78995230	+	0	NA	intron (NM_001159772, intron 5 of 5)	AluSx3|SINE|Alu	14889	NM_001159772	124583		NM_138793	ENSG00000171302	CANT1	DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
211168	chr7	102584301	102584500	+	0	NA	intron (NM_001079877, intron 17 of 19)	MIR3|SINE|MIR	-11779	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
50365	chr12	47209871	47210550	+	0	NA	non-coding (NR_026544, exon 3 of 3)	non-coding (NR_026544, exon 3 of 3)	6233	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
86371	chr16	66560621	66561000	+	0	NA	intron (NM_001204099, intron 2 of 3)	(AC)n|Simple_repeat|Simple_repeat	-5629	NM_181268	113540		NM_052999	ENSG00000089505	CMTM1	CKLFH|CKLFH1|CKLFSF1	CKLF like MARVEL transmembrane domain containing 1	protein-coding
236715	chrX	77962201	77962680	+	0	NA	intron (NR_104109, intron 1 of 9)	MER51B|LTR|ERV1	7198	NM_001029891	441531		NM_001029891	ENSG00000226784	PGAM4	PGAM-B|PGAM1|PGAM3|dJ1000K24.1	phosphoglycerate mutase family member 4	protein-coding
35869	chr11	2385271	2386300	+	0	NA	intron (NM_004356, intron 1 of 7)	L1ME2z|LINE|L1	-7793	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
31861	chr10	100012171	100012530	+	0	NA	Intergenic	LTR8|LTR|ERV1	-2403	NM_015221	23268		NM_015221	ENSG00000107554	DNMBP	ARHGEF36|CTRCT48|TUBA	dynamin binding protein	protein-coding
156977	chr22	42494751	42494850	+	0	NA	Intergenic	Intergenic	-5779	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
5933	chr1	26867151	26867450	+	0	NA	Intergenic	AluJb|SINE|Alu	4151	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
153919	chr22	30321051	30321500	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	5666	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
223888	chr9	278601	279130	+	0	NA	intron (NM_001193536, intron 1 of 46)	L2a|LINE|L2	5817	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
113999	chr19	10852201	10852600	+	0	NA	intron (NM_001136482, intron 2 of 6)	intron (NM_001136482, intron 2 of 6)	3985	NM_001136482	255809		NM_001136482	ENSG00000214212	C19orf38	HIDE1	chromosome 19 open reading frame 38	protein-coding
72065	chr15	28885251	28886830	+	0	NA	promoter-TSS (NM_001379685)	promoter-TSS (NM_001379685)	66	NM_001353792	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
22398	chr1	219416601	219416830	+	0	NA	Intergenic	MER66C|LTR|ERV1	140609	NR_135822	102723886		NR_135822		LYPLAL1-AS1	-	LYPLAL1 antisense RNA 1	ncRNA
80286	chr16	2249521	2250030	+	0	NA	intron (NM_001178029, intron 2 of 6)	AluY|SINE|Alu	1812	NM_001178029	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
73758	chr15	45456271	45457090	+	0	NA	Intergenic	Intergenic	23630	NR_030599	100126311		NR_030599	ENSG00000284386	MIR147B	MIRN147B|mir-147b	microRNA 147b	ncRNA
31168	chr10	91100651	91100750	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	52380	NR_002779	119369		NM_153205		NUDT9P1	C10orf98|bA56M3.1	nudix hydrolase 9 pseudogene 1	pseudo
76496	chr15	74932001	74932200	+	0	NA	intron (NM_004255, intron 1 of 4)	MIRb|SINE|MIR	5973	NM_004255	9377		NM_004255	ENSG00000178741	COX5A	COX|COX-VA|MC4DN20|VA	cytochrome c oxidase subunit 5A	protein-coding
195662	chr6	38034301	38034500	+	0	NA	intron (NM_021943, intron 2 of 5)	intron (NM_021943, intron 2 of 5)	214673	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
188769	chr5	157603191	157604400	+	0	NA	Intergenic	Intergenic	-28020	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
67097	chr14	68285151	68286330	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	343047	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
50390	chr12	47270971	47271530	+	0	NA	Intergenic	L2b|LINE|L2	36149	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
23662	chr1	231214251	231214550	+	0	NA	intron (NM_001300889, intron 11 of 11)	intron (NM_001300889, intron 11 of 11)	-26773	NR_166514	149373		NM_153009	ENSG00000235710	TRIM67-AS1	-	TRIM67 antisense RNA 1	ncRNA
129470	chr2	69577651	69578030	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-57669	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
77293	chr15	82331651	82332550	+	0	NA	intron (NR_045529, intron 23 of 23)	intron (NR_045529, intron 23 of 23)	17375	NM_001164465	647042		NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family like 10	protein-coding
31400	chr10	95290701	95291600	+	0	NA	promoter-TSS (NM_020992)	promoter-TSS (NM_020992)	-147	NM_020992	9124		NM_020992	ENSG00000107438	PDLIM1	CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1	PDZ and LIM domain 1	protein-coding
24812	chr10	228251	228350	+	0	NA	intron (NM_212479, intron 4 of 13)	intron (NM_212479, intron 4 of 13)	48306	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
164727	chr3	68893651	68893830	+	0	NA	intron (NM_001005527, intron 1 of 5)	intron (NM_001005527, intron 1 of 5)	38807	NM_182522	151647		NM_182522	ENSG00000163377	TAFA4	FAM19A4|TAFA-4	TAFA chemokine like family member 4	protein-coding
20235	chr1	193241121	193241900	+	0	NA	intron (NM_024529, intron 15 of 16)	L1MA4A|LINE|L1	-54897	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
222076	chr8	130345551	130345850	+	0	NA	intron (NM_001362924, intron 3 of 30)	AluJb|SINE|Alu	-49167	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
233478	chr9	137780921	137781180	+	0	NA	intron (NM_024757, intron 14 of 26)	CpG	7356	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
84973	chr16	31429071	31429780	+	0	NA	Intergenic	Intergenic	-1065	NM_005205	1339		NM_005205	ENSG00000156885	COX6A2	COX6AH|COXVIAH|COXVIa-M|MC4DN18	cytochrome c oxidase subunit 6A2	protein-coding
116852	chr19	18604971	18606080	+	0	NA	intron (NM_004750, intron 1 of 8)	CpG	1274	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
95060	chr17	32676601	32676830	+	0	NA	intron (NM_015194, intron 16 of 21)	intron (NM_015194, intron 16 of 21)	189722	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
106418	chr18	13530901	13531130	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	71068	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
13326	chr1	113773851	113773970	+	0	NA	intron (NM_018364, intron 4 of 6)	AluSc|SINE|Alu	-14022	NM_001323042	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
204431	chr7	3119251	3119850	+	0	NA	Intergenic	AluSx1|SINE|Alu	39023	NR_126024	100129603		NR_126024		LOC100129603	-	uncharacterized LOC100129603	ncRNA
139880	chr2	230664051	230664800	+	0	NA	Intergenic	Intergenic	36104	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
174329	chr4	38672471	38672900	+	0	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-8057	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
213149	chr7	131508901	131509300	+	0	NA	intron (NM_005397, intron 3 of 7)	intron (NM_005397, intron 3 of 7)	47528	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
170827	chr3	189961451	189961980	+	0	NA	intron (NM_001134418, intron 14 of 14)	intron (NM_001134418, intron 14 of 14)	131793	NR_030642	100126340		NR_030642	ENSG00000216058	MIR944	MIRN944|hsa-mir-944|mir-944	microRNA 944	ncRNA
106685	chr18	23236801	23237000	+	0	NA	intron (NM_138375, intron 6 of 9)	intron (NM_138375, intron 6 of 9)	81075	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
95095	chr17	34542701	34543000	+	0	NA	Intergenic	Intergenic	36519	NR_160787	400591		NM_207454	ENSG00000197322	TMEM132E-DT	C17orf102	TMEM132E divergent transcript	ncRNA
172549	chr4	2395971	2396400	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	22460	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
181667	chr5	50432601	50433180	+	0	NA	intron (NM_198449, intron 1 of 8)	AluSx3|SINE|Alu	8398	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
183856	chr5	87121201	87122250	+	0	NA	intron (NR_105018, intron 1 of 3)	intron (NR_105018, intron 1 of 3)	1577	NR_105018	101929380		NR_105018		LOC101929380	-	uncharacterized LOC101929380	ncRNA
49393	chr12	22459821	22460280	+	0	NA	intron (NM_001385333, intron 23 of 27)	intron (NM_001385333, intron 23 of 27)	84147	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
43725	chr11	86051351	86051450	+	0	NA	intron (NM_001206947, intron 1 of 18)	AluSz|SINE|Alu	17684	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
94816	chr17	31316551	31316850	+	0	NA	3' UTR (NM_014210, exon 2 of 2)	3' UTR (NM_014210, exon 2 of 2)	-2646	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
97340	chr17	43277901	43278950	+	0	NA	promoter-TSS (NR_002716).7	promoter-TSS (NR_002716).7	-257	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
93666	chr17	19218301	19218700	+	0	NA	intron (NR_160286, intron 1 of 3).3	AluY|SINE|Alu	2870	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
132390	chr2	105780551	105781550	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	35987	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
65682	chr14	52697051	52697250	+	0	NA	Intergenic	AluSz|SINE|Alu	-1592	NM_001382465	30001		NM_014584	ENSG00000197930	ERO1A	ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha	endoplasmic reticulum oxidoreductase 1 alpha	protein-coding
213092	chr7	131109501	131110430	+	0	NA	promoter-TSS (NR_109851)	promoter-TSS (NR_109851)	-49	NR_109852	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
167841	chr3	133926371	133926730	+	0	NA	Intergenic	Intergenic	3262	NR_161373	80111		NM_025041	ENSG00000288547	C3orf36	-	chromosome 3 putative open reading frame 36	ncRNA
2926	chr1	11737571	11737880	+	0	NA	intron (NM_001040195, intron 1 of 3)	intron (NM_001040195, intron 1 of 3)	1589	NM_020350	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
55162	chr12	100144121	100144550	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-1461	NM_001006947	23074		NM_015054	ENSG00000111647	BLTP3B	SHIP164|SHIP164A|UHRF1BP1L	bridge-like lipid transfer protein family member 3B	protein-coding
16977	chr1	155964501	155964700	+	0	NA	intron (NM_004723, intron 7 of 21)	intron (NM_004723, intron 7 of 21)	-13264	NR_106796	102465442		NR_106796	ENSG00000277817	MIR6738	hsa-mir-6738	microRNA 6738	ncRNA
40994	chr11	65399501	65399700	+	0	NA	intron (NM_001300832, intron 6 of 9)	intron (NM_001300832, intron 6 of 9)	12963	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
88245	chr16	82452051	82452950	+	0	NA	Intergenic	Intergenic	-174469	NM_001257	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
13113	chr1	111629801	111630080	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-9542	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
227168	chr9	86945801	86947300	+	0	NA	exon (NM_002048, exon 1 of 1)	exon (NM_002048, exon 1 of 1)	956	NM_002048	2619		NM_002048	ENSG00000180447	GAS1	-	growth arrest specific 1	protein-coding
92911	chr17	16491471	16493080	+	0	NA	promoter-TSS (NM_207387)	promoter-TSS (NM_207387)	-82	NM_207387	388341		NM_207387	ENSG00000181350	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding
71331	chr14	105416921	105417450	+	0	NA	TTS (NR_125384)	TTS (NR_125384)	2554	NR_125384	100507437		NR_125384	ENSG00000251602	MTA1-DT	-	MTA1 divergent transcript	ncRNA
75339	chr15	65386771	65386930	+	0	NA	intron (NM_020962, intron 16 of 19)	intron (NM_020962, intron 16 of 19)	-8848	NM_004884	9543		NM_004884	ENSG00000174498	IGDCC3	HsT18880|PUNC	immunoglobulin superfamily DCC subclass member 3	protein-coding
32539	chr10	103191371	103191730	+	0	NA	intron (NM_001351175, intron 1 of 19)	intron (NM_001351175, intron 1 of 19)	1722	NM_001134373	22978		NM_012229	ENSG00000076685	NT5C2	GMP|NT5B|PNT5|SPG45|SPG65|cN-II	5'-nucleotidase, cytosolic II	protein-coding
110026	chr19	1452221	1452500	+	0	NA	promoter-TSS (NM_001351273)	promoter-TSS (NM_001351273)	-624	NM_001351273	10297		NM_005883	ENSG00000115266	APC2	APCL|MRT74	APC regulator of WNT signaling pathway 2	protein-coding
8275	chr1	39903271	39903430	+	0	NA	Intergenic	L2c|LINE|L2	-1433	NM_005376	4610		NM_005376	ENSG00000116990	MYCL	L-Myc|LMYC|MYCL1|bHLHe38	MYCL proto-oncogene, bHLH transcription factor	protein-coding
167396	chr3	128922771	128924580	+	0	NA	intron (NM_001348520, intron 11 of 14)	HERVK14C-int|LTR|ERVK	44055	NM_014049	28976		NM_014049	ENSG00000177646	ACAD9	MC1DN20|NPD002	acyl-CoA dehydrogenase family member 9	protein-coding
32768	chr10	104334201	104334500	+	0	NA	promoter-TSS (NM_033397)	promoter-TSS (NM_033397)	-445	NM_033397	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
27664	chr10	33047851	33048230	+	0	NA	Intergenic	Intergenic	68767	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
165686	chr3	101902101	101902300	+	0	NA	Intergenic	Intergenic	-38659	NR_026934	152225		NR_026934	ENSG00000214407	RDUR	LINC02085	RIG-I dependent antiviral response regulator RNA	ncRNA
198434	chr6	106100251	106100350	+	0	NA	intron (NM_182907, intron 2 of 4)	intron (NM_182907, intron 2 of 4)	1359	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
80962	chr16	3874951	3875900	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	4695	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
197622	chr6	83065151	83066350	+	0	NA	promoter-TSS (NM_001304437)	promoter-TSS (NM_001304437)	91	NM_001350602	90025		NM_198920	ENSG00000118420	UBE3D	C6orf157|H10BH|UBE2CBP|YJR141W	ubiquitin protein ligase E3D	protein-coding
155873	chr22	39494871	39495800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4765	NM_001304564	54471		NM_013298	ENSG00000100335	MIEF1	AltMIEF1|D3A|HSU79252|L0R8F8|MID51|MIEF1-MP|OPA14|SMCR7L|dJ1104E15.3	mitochondrial elongation factor 1	protein-coding
9998	chr1	55165051	55165150	+	0	NA	intron (NM_015306, intron 7 of 67)	intron (NM_015306, intron 7 of 67)	50264	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
33055	chr10	110868901	110869880	+	0	NA	non-coding (NR_026932, exon 1 of 1)	non-coding (NR_026932, exon 1 of 1)	1514	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
56305	chr12	112417071	112417600	+	0	NA	intron (NM_001320141, intron 1 of 8)	AluSz|SINE|Alu	1500	NM_001320141	6128		NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1|eL6	ribosomal protein L6	protein-coding
156124	chr22	40105501	40106030	+	0	NA	intron (NM_001024843, intron 1 of 23)	L1ME3B|LINE|L1	60948	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
103466	chr17	78338871	78339500	+	0	NA	Intergenic	Intergenic	20482	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
166085	chr3	109050571	109050830	+	0	NA	intron (NM_014429, intron 14 of 27)	intron (NM_014429, intron 14 of 27)	-50756	NR_144461	100506506		NR_144461	ENSG00000239314	MORC1-AS1	-	MORC1 antisense RNA 1	ncRNA
118770	chr19	38382801	38383000	+	0	NA	intron (NM_002812, intron 6 of 6)	AluSx1|SINE|Alu	5134	NM_152657	199720		NM_152657	ENSG00000179168	GGN	-	gametogenetin	protein-coding
204347	chr7	2869151	2869450	+	0	NA	Intergenic	Intergenic	-24992	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
134349	chr2	136126521	136126780	+	0	NA	Intergenic	Intergenic	-8501	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
62074	chr13	94345421	94345700	+	0	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	134122	NM_001922	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
44094	chr11	95734001	95734350	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	55607	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
175316	chr4	68319001	68319500	+	0	NA	intron (NM_001031732, intron 12 of 16)	intron (NM_001031732, intron 12 of 16)	30840	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
214758	chr7	151073851	151074150	+	0	NA	intron (NM_001199692, intron 16 of 22)	intron (NM_001199692, intron 16 of 22)	6809	NM_006712	10922		NM_006712	ENSG00000164896	FASTK	FAST	Fas activated serine/threonine kinase	protein-coding
96928	chr17	42158521	42158900	+	0	NA	intron (NM_012285, intron 16 of 16)	AluY|SINE|Alu	-3721	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
64858	chr14	35286821	35287730	+	0	NA	intron (NM_001282234, intron 1 of 6)	intron (NM_001282234, intron 1 of 6)	-5042	NR_104110	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
213238	chr7	133857851	133857950	+	0	NA	intron (NM_021807, intron 11 of 17)	LTR2752|LTR|ERV1	-33012	NR_120513	101928861		NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
174590	chr4	40251121	40251700	+	0	NA	Intergenic	LTR33A|LTR|ERVL	54379	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
124672	chr2	3303451	3304500	+	0	NA	intron (NM_001330530, intron 3 of 9)	intron (NM_001330530, intron 3 of 9)	73843	NM_003310	7260		NM_003310	ENSG00000032389	EIPR1	EIPR-1|TSSC1	EARP complex and GARP complex interacting protein 1	protein-coding
190921	chr6	2855151	2855650	+	0	NA	non-coding (NR_033851, exon 2 of 2)	non-coding (NR_033851, exon 2 of 2)	-1293	NR_039788	100616285		NR_039788	ENSG00000266750	MIR4645	mir-4645	microRNA 4645	ncRNA
204223	chr7	2532321	2533480	+	0	NA	Intergenic	Intergenic	5826	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
185171	chr5	119350901	119351300	+	0	NA	intron (NM_001286814, intron 1 of 1)	AluJr4|SINE|Alu	-3673	NM_001286813	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
64151	chr14	22899051	22899350	+	0	NA	3' UTR (NM_001077352, exon 12 of 12)	3' UTR (NM_001077352, exon 12 of 12)	15978	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
87720	chr16	75075021	75075880	+	0	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	41322	NM_153486	197257		NM_153486	ENSG00000166816	LDHD	DLACD|DLD	lactate dehydrogenase D	protein-coding
225210	chr9	34137471	34137800	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-10937	NM_015397	25853		NM_015397	ENSG00000198876	DCAF12	CT102|KIAA1892|TCC52|WDR40A	DDB1 and CUL4 associated factor 12	protein-coding
84062	chr16	29589051	29589150	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSq2|SINE|Alu	5992	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
54422	chr12	91326421	91326680	+	0	NA	Intergenic	Intergenic	-143733	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
38157	chr11	35664421	35664680	+	0	NA	intron (NM_017583, intron 1 of 4)	Tigger18a|DNA|TcMar-Tigger	1775	NM_017583	54765		NM_017583	ENSG00000166326	TRIM44	AN3|DIPB|HSA249128|MC7	tripartite motif containing 44	protein-coding
202527	chr6	158605221	158605880	+	0	NA	intron (NR_164859, intron 7 of 16)	intron (NR_164859, intron 7 of 16)	-4157	NR_106981	102465694		NR_106981	ENSG00000278571	MIR7161	hsa-mir-7161	microRNA 7161	ncRNA
132529	chr2	106147471	106148030	+	0	NA	intron (NR_165308, intron 5 of 14)	MER4D|LTR|ERV1	-8869	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
200849	chr6	138406371	138407030	+	0	NA	intron (NM_014320, intron 3 of 3)	MLT1A0|LTR|ERVL-MaLR	2477	NM_014320	23593		NM_014320	ENSG00000051620	HEBP2	C6ORF34B|C6orf34|PP23|SOUL	heme binding protein 2	protein-coding
130847	chr2	87263951	87264050	+	0	NA	Intergenic	Intergenic	69214	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
39086	chr11	48003971	48004560	+	0	NA	intron (NM_002843, intron 1 of 24)	MIR|SINE|MIR	23706	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
35177	chr11	781371	781680	+	0	NA	intron (NR_126342, intron 2 of 3)	MER2|DNA|TcMar-Tigger	3947	NR_126342	171391		NM_138291	ENSG00000255284	GATD1-DT	NS3BP	GATD1 divergent transcript	ncRNA
5702	chr1	26374451	26374700	+	0	NA	Intergenic	Intergenic	-1781	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
153852	chr22	30196321	30197000	+	0	NA	Intergenic	Intergenic	-42534	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
61518	chr13	57630801	57631300	+	0	NA	promoter-TSS (NM_001040429)	promoter-TSS (NM_001040429)	-694	NM_001040429	27253		NM_014459	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
8746	chr1	42700371	42701030	+	0	NA	intron (NR_132737, intron 5 of 6)	intron (NR_132737, intron 5 of 6)	17564	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
229503	chr9	122263101	122263300	+	0	NA	intron (NR_027125, intron 1 of 6)	intron (NR_027125, intron 1 of 6)	-1403	NM_001173512	92399		NM_138777	ENSG00000148187	MRRF	MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding
103498	chr17	78386101	78387300	+	0	NA	intron (NR_111989, intron 1 of 8)	intron (NR_111989, intron 1 of 8)	8051	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
226700	chr9	75110521	75110780	+	0	NA	intron (NM_012383, intron 1 of 9)	intron (NM_012383, intron 1 of 9)	22136	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
149824	chr21	35020521	35021080	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	18626	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
134043	chr2	131115801	131116200	+	0	NA	intron (NM_001309448, intron 1 of 6)	intron (NM_001309448, intron 1 of 6)	11153	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
177465	chr4	113692721	113693250	+	0	NA	intron (NM_001321585, intron 2 of 19)	intron (NM_001321585, intron 2 of 19)	68753	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
135445	chr2	161217121	161217880	+	0	NA	intron (NM_004180, intron 4 of 7)	L1MEb|LINE|L1	-27239	NR_110164	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
91752	chr17	6776001	6776200	+	0	NA	promoter-TSS (NM_153230)	promoter-TSS (NM_153230)	-115	NM_153230	162517		NM_153230	ENSG00000177294	FBXO39	CT144|FBOX39|Fbx39	F-box protein 39	protein-coding
79315	chr16	560971	561130	+	0	NA	intron (NM_145270, intron 1 of 2)	intron (NM_145270, intron 1 of 2)	656	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
24958	chr10	1938401	1938700	+	0	NA	Intergenic	Intergenic	75798	NR_040253	282980		NR_040253		LINC00700	-	long intergenic non-protein coding RNA 700	ncRNA
39273	chr11	57873571	57873730	+	0	NA	Intergenic	Intergenic	111848	NM_001331	1500		NM_001331	ENSG00000198561	CTNND1	BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
99903	chr17	56891721	56892090	+	0	NA	promoter-TSS (NR_037408)	promoter-TSS (NR_037408)	-550	NR_037408	100500827		NR_037408	ENSG00000284542	MIR3614	mir-3614	microRNA 3614	ncRNA
127946	chr2	46541271	46543600	+	0	NA	promoter-TSS (NM_012249)	promoter-TSS (NM_012249)	-55	NM_012249	23433		NM_012249	ENSG00000119729	RHOQ	ARHQ|HEL-S-42|RASL7A|TC10|TC10A	ras homolog family member Q	protein-coding
130525	chr2	85614621	85615180	+	0	NA	intron (NM_001256727, intron 1 of 12)	MER41C|LTR|ERV1	-1286	NM_006590	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
202370	chr6	157803401	157803600	+	0	NA	Intergenic	L1M6|LINE|L1	-19746	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
11020	chr1	84853171	84853330	+	0	NA	intron (NM_012152, intron 2 of 2)	intron (NM_012152, intron 2 of 2)	39956	NM_012152	23566		NM_012152	ENSG00000171517	LPAR3	EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3	lysophosphatidic acid receptor 3	protein-coding
125234	chr2	10381101	10381300	+	0	NA	intron (NM_001258359, intron 1 of 4)	intron (NM_001258359, intron 1 of 4)	12436	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
36594	chr11	6724121	6724380	+	0	NA	Intergenic	L1M3f|LINE|L1	-2371	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
61382	chr13	51450151	51450630	+	0	NA	3' UTR (NM_001039938, exon 3 of 3)	3' UTR (NM_001039938, exon 3 of 3)	2646	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
216012	chr8	9004471	9004730	+	0	NA	intron (NM_001354635, intron 1 of 6)	AluJb|SINE|Alu	1486	NM_001354635	90459		NM_153332	ENSG00000104626	ERI1	3'HEXO|HEXO|HXAL|SEMDGC|SEMDGS|THEX1	exoribonuclease 1	protein-coding
196235	chr6	42845351	42845850	+	0	NA	intron (NM_015349, intron 5 of 11)	intron (NM_015349, intron 5 of 11)	24544	NM_015349	23506		NM_015349	ENSG00000112624	BICRAL	GLTSCR1L|KIAA0240|SMARCK2	BICRA like chromatin remodeling complex associated protein	protein-coding
202845	chr6	159759551	159760180	+	0	NA	TTS (NR_037166)	TTS (NR_037166)	-2180	NM_005891	39		NM_005891	ENSG00000120437	ACAT2	-	acetyl-CoA acetyltransferase 2	protein-coding
37458	chr11	18265271	18265830	+	0	NA	promoter-TSS (NM_000331)	promoter-TSS (NM_000331)	-675	NM_000331	6288		NM_000331	ENSG00000173432	SAA1	PIG4|SAA|SAA2|TP53I4	serum amyloid A1	protein-coding
144128	chr20	34006621	34007080	+	0	NA	intron (NM_016732, intron 1 of 9)	Tigger3a|DNA|TcMar-Tigger	-12483	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
227196	chr9	87972101	87972700	+	0	NA	intron (NM_012119, intron 2 of 6)	intron (NM_012119, intron 2 of 6)	2133	NM_001170639	23552		NM_012119	ENSG00000156345	CDK20	CCRK|CDCH|P42|PNQALRE	cyclin dependent kinase 20	protein-coding
53798	chr12	69241571	69242000	+	0	NA	intron (NM_001300947, intron 1 of 10)	intron (NM_001300947, intron 1 of 10)	2216	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
215357	chr7	157384101	157385000	+	0	NA	intron (NM_005494, intron 6 of 7)	intron (NM_005494, intron 6 of 7)	47546	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
56456	chr12	114874451	114874550	+	0	NA	Intergenic	(AGGAG)n|Simple_repeat|Simple_repeat	-190325	NM_005996	6926		NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box transcription factor 3	protein-coding
127690	chr2	43208621	43208880	+	0	NA	Intergenic	Intergenic	17856	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
57253	chr12	121576301	121576500	+	0	NA	intron (NM_001005366, intron 2 of 22)	intron (NM_001005366, intron 2 of 22)	3846	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
12945	chr1	110780621	110781190	+	0	NA	Intergenic	Intergenic	-90294	NM_001040033	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
177572	chr4	119407651	119407900	+	0	NA	non-coding (NR_037596, exon 3 of 3)	non-coding (NR_037596, exon 3 of 3)	2885	NR_037596	401149		NR_037596		LINC01061	KIKAT	long intergenic non-protein coding RNA 1061	ncRNA
205748	chr7	23505801	23506380	+	0	NA	intron (NM_013293, intron 6 of 7)	intron (NM_013293, intron 6 of 7)	15702	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
70350	chr14	101863001	101863200	+	0	NA	intron (NM_178587, intron 2 of 11)	AluSx|SINE|Alu	53237	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
167368	chr3	128784121	128784680	+	0	NA	intron (NM_004637, intron 1 of 5)	L2|LINE|L2	58217	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
147914	chr20	62903221	62904130	+	0	NA	intron (NM_001193369, intron 6 of 15)	intron (NM_001193369, intron 6 of 15)	-20772	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
232544	chr9	136344101	136344550	+	0	NA	intron (NM_001145638, intron 9 of 13)	MLT1A|LTR|ERVL-MaLR	-8732	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
233795	chrX	1447021	1447600	+	0	NA	intron (NM_001173473, intron 1 of 12).2	intron (NM_001173473, intron 1 of 12).2	5599	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
225037	chr9	33153671	33154550	+	0	NA	intron (NM_001378495, intron 1 of 5)	L1M4|LINE|L1	-12838	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
16624	chr1	155087301	155087700	+	0	NA	TTS (NM_004952)	TTS (NM_004952)	8663	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
59478	chr13	26253451	26254500	+	0	NA	promoter-TSS (NM_001318368)	promoter-TSS (NM_001318368)	-154	NM_001260	1024		NM_001260	ENSG00000132964	CDK8	IDDHBA|K35	cyclin dependent kinase 8	protein-coding
193843	chr6	31532071	31532800	+	0	NA	intron (NM_080598, intron 7 of 10).7	AluJr|SINE|Alu	3473	NM_001011700	401250		NM_001011700	ENSG00000204511	MCCD1	-	mitochondrial coiled-coil domain 1	protein-coding
100824	chr17	64095721	64096180	+	0	NA	intron (NM_001433, intron 2 of 21)	L2c|LINE|L2	34194	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
86679	chr16	67508901	67509430	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	19580	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
234324	chrX	13938571	13938730	+	0	NA	promoter-TSS (NM_001001994)	promoter-TSS (NM_001001994)	-12	NM_001001994	2824		NM_005278	ENSG00000046653	GPM6B	M6B	glycoprotein M6B	protein-coding
96364	chr17	40092751	40092850	+	0	NA	TTS (NM_021724)	TTS (NM_021724)	7789	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
113977	chr19	10817971	10818430	+	0	NA	promoter-TSS (NR_029586)	promoter-TSS (NR_029586)	-704	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
47215	chr12	860521	861000	+	0	NA	intron (NM_018979, intron 6 of 27)	intron (NM_018979, intron 6 of 27)	72316	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
20058	chr1	185568501	185569250	+	0	NA	intron (NR_110793, intron 2 of 3)	intron (NR_110793, intron 2 of 3)	59613	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
116919	chr19	18793701	18794630	+	0	NA	Intergenic	Intergenic	-2860	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
156999	chr22	42512251	42512650	+	0	NA	non-coding (NR_027786, exon 11 of 11)	non-coding (NR_027786, exon 11 of 11)	7346	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
21756	chr1	206902471	206903230	+	0	NA	TTS (NM_001142473)	TTS (NM_001142473)	5407	NM_006850	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
125380	chr2	11158751	11159750	+	0	NA	intron (NM_001282710, intron 1 of 5)	intron (NM_001282710, intron 1 of 5)	3783	NM_152391	130814		NM_152391	ENSG00000162976	SLC66A3	C2orf22|PQLC3	solute carrier family 66 member 3	protein-coding
52050	chr12	54017471	54018450	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	1072	NM_014620	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
200876	chr6	138945521	138945980	+	0	NA	intron (NM_031922, intron 2 of 19)	intron (NM_031922, intron 2 of 19)	42503	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
224090	chr9	4382701	4382980	+	0	NA	Intergenic	Intergenic	-82772	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
179309	chr4	177400121	177400650	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	42052	NM_000027	175		NM_000027	ENSG00000038002	AGA	AGU|ASRG|GA	aspartylglucosaminidase	protein-coding
189673	chr5	176393701	176393900	+	0	NA	intron (NM_001364126, intron 4 of 4)	Charlie19a|DNA|hAT-Charlie	-4873	NM_001256539	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
145523	chr20	44072901	44073300	+	0	NA	Intergenic	Intergenic	114088	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
1897	chr1	6450651	6450750	+	0	NA	intron (NM_001367474, intron 10 of 14)	intron (NM_001367474, intron 10 of 14)	15473	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
44324	chr11	102402451	102403150	+	0	NA	intron (NM_052932, intron 2 of 4)	intron (NM_052932, intron 2 of 4)	49965	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
237744	chrX	129602821	129603280	+	0	NA	Intergenic	L2c|LINE|L2	51906	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
151917	chr22	19026851	19027150	+	0	NA	intron (NR_110533, intron 5 of 5)	intron (NR_110533, intron 5 of 5)	4376	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
111997	chr19	4959351	4959450	+	0	NA	intron (NM_013282, intron 15 of 15)	intron (NM_013282, intron 15 of 15)	-9713	NM_001370093	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
87838	chr16	75648401	75649100	+	0	NA	intron (NR_144545, intron 1 of 2)	FLAM_C|SINE|Alu	977	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
172772	chr4	2928071	2928880	+	0	NA	exon (NM_001354761, exon 16 of 16)	exon (NM_001354761, exon 16 of 16)	5762	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
57773	chr12	122990951	122991250	+	0	NA	intron (NM_001384662, intron 14 of 23)	intron (NM_001384662, intron 14 of 23)	11040	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
192388	chr6	24765501	24765900	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-9237	NM_001251990	51053		NM_015895	ENSG00000112312	GMNN	Gem|MGORS6	geminin DNA replication inhibitor	protein-coding
225804	chr9	37582651	37583030	+	0	NA	Intergenic	Intergenic	-6460	NM_012166	26267		NM_012166	ENSG00000147912	FBXO10	FBX10|PRMT11	F-box protein 10	protein-coding
181648	chr5	50363301	50363500	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	77888	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
188445	chr5	154473351	154473450	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	4827	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
215851	chr8	7221851	7222190	+	0	NA	intron (NR_168401, intron 1 of 2)	CpG-26945	6168	NR_168401	101928095		NR_168401		LOC101928095	-	uncharacterized LOC101928095	ncRNA
193221	chr6	29838801	29839350	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	11250	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
197400	chr6	73509751	73510330	+	0	NA	TTS (NM_001123226)	TTS (NM_001123226)	8398	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
21083	chr1	203318051	203318450	+	0	NA	Intergenic	MIR3|SINE|MIR	12731	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
236154	chrX	63754501	63755730	+	0	NA	promoter-TSS (NM_001353927)	promoter-TSS (NM_001353927)	8	NM_001353928	23229		NM_015185	ENSG00000131089	ARHGEF9	COLLYBISTIN|DEE8|EIEE8|HPEM-2|PEM-2|PEM2	Cdc42 guanine nucleotide exchange factor 9	protein-coding
210938	chr7	101250601	101250800	+	0	NA	Intergenic	Intergenic	-5619	NM_016068	51024		NM_016068	ENSG00000214253	FIS1	CGI-135|TTC11	fission, mitochondrial 1	protein-coding
169707	chr3	172105651	172106300	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	65444	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
97019	chr17	42302801	42303050	+	0	NA	intron (NM_001288719, intron 8 of 17)	AluSz|SINE|Alu	14869	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
140443	chr2	233148401	233149200	+	0	NA	intron (NM_001017915, intron 9 of 26).2	intron (NM_001017915, intron 9 of 26).2	88458	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
231775	chr9	132249071	132249650	+	0	NA	Intergenic	Intergenic	87302	NM_032536	84628		NM_032536	ENSG00000196358	NTNG2	LHLL9381|Lmnt2|NEDBASH|NTNG1|NetrinG2|bA479K20.1	netrin G2	protein-coding
47654	chr12	6310301	6311350	+	0	NA	promoter-TSS (NM_001144856)	promoter-TSS (NM_001144856)	143	NR_169278	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
24241	chr1	236168801	236169000	+	0	NA	intron (NM_003272, intron 2 of 6)	intron (NM_003272, intron 2 of 6)	26361	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
85745	chr16	56705271	56705830	+	0	NA	Intergenic	Intergenic	23080	NM_005952	4501		NM_005952	ENSG00000187193	MT1X	MT-1l|MT1	metallothionein 1X	protein-coding
21276	chr1	204406401	204406900	+	0	NA	intron (NM_032833, intron 1 of 1)	AluSq|SINE|Alu	5167	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
19999	chr1	185280651	185280750	+	0	NA	intron (NM_017673, intron 18 of 18)	MER21C|LTR|ERVL	36543	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
87131	chr16	69107451	69108030	+	0	NA	intron (NM_005329, intron 1 of 3)	CpG-9877	200	NM_005329	3038		NM_005329	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
158987	chr3	10279901	10280300	+	0	NA	promoter-TSS (NR_004431)	promoter-TSS (NR_004431)	-251	NR_162141	113219470		NR_162141		MIR12127	-	microRNA 12127	ncRNA
199898	chr6	127858071	127858230	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-2962	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
90122	chr16	90117421	90118230	+	0	NA	intron (NR_126161, intron 3 of 3)	intron (NR_126161, intron 3 of 3)	15561	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
146358	chr20	49261821	49262280	+	0	NA	intron (NM_021035, intron 6 of 13)	intron (NM_021035, intron 6 of 13)	16007	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
134376	chr2	136287621	136287880	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-169601	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
215965	chr8	8670541	8671030	+	0	NA	Intergenic	Intergenic	-31152	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
221925	chr8	129825221	129825480	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-38726	NM_031415	56169		NM_031415	ENSG00000147697	GSDMC	MLZE	gasdermin C	protein-coding
29914	chr10	73233071	73233230	+	0	NA	exon (NM_173348, exon 10 of 14)	exon (NM_173348, exon 10 of 14)	14105	NM_015190	23234		NM_015190	ENSG00000213551	DNAJC9	HDJC9|JDD1|SB73	DnaJ heat shock protein family (Hsp40) member C9	protein-coding
139556	chr2	224924351	224924730	+	0	NA	intron (NM_001363762, intron 2 of 55)	L1MB7|LINE|L1	22509	NM_001290263	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
86400	chr16	66729351	66729450	+	0	NA	intron (NM_006141, intron 8 of 12)	intron (NM_006141, intron 8 of 12)	22209	NM_006141	1783		NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding
237643	chrX	124226021	124226480	+	0	NA	Intergenic	Intergenic	-106410	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
183669	chr5	80489901	80490100	+	0	NA	intron (NM_205548, intron 1 of 5)	intron (NM_205548, intron 1 of 5)	1900	NM_205548	167555		NM_205548	ENSG00000152380	FAM151B	UNQ9217	family with sequence similarity 151 member B	protein-coding
86168	chr16	57798601	57798800	+	0	NA	promoter-TSS (NM_001318715)	promoter-TSS (NM_001318715)	-676	NM_001318715	3801		NM_005550	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
189774	chr5	176655851	176656400	+	0	NA	exon (NM_012171, exon 6 of 9)	exon (NM_012171, exon 6 of 9)	8641	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
31902	chr10	100349721	100349980	+	0	NA	intron (NM_005063, intron 2 of 5)	intron (NM_005063, intron 2 of 5)	2617	NM_005063	6319		NM_005063	ENSG00000099194	SCD	FADS5|MSTP008|SCD1|SCDOS|hSCD1	stearoyl-CoA desaturase	protein-coding
3615	chr1	16364621	16365300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2282	NR_073501	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
194194	chr6	32150171	32150530	+	0	NA	intron (NM_030651, intron 2 of 3).2	CpG	1589	NM_030651	80863		NM_030651	ENSG00000204314	PRRT1	C6orf31|DSPD1|IFITMD7|NG5|SynDIG4	proline rich transmembrane protein 1	protein-coding
211147	chr7	102551351	102551930	+	0	NA	intron (NM_001031618, intron 1 of 8).2	intron (NM_001031618, intron 1 of 8).2	408	NM_001031618	441273		NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1|SPDYB2L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
109443	chr19	735501	735900	+	0	NA	intron (NM_002579, intron 6 of 8)	intron (NM_002579, intron 6 of 8)	-15412	NM_173481	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
82006	chr16	11911451	11912730	+	0	NA	intron (NM_001130007, intron 1 of 14)	AluSx1|SINE|Alu	3866	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
72579	chr15	34754951	34755050	+	0	NA	promoter-TSS (NR_120329)	promoter-TSS (NR_120329)	-2	NM_020660	57369		NM_020660	ENSG00000159248	GJD2	CX36|GJA9	gap junction protein delta 2	protein-coding
34346	chr10	132196301	132196900	+	0	NA	intron (NM_006426, intron 4 of 13)	intron (NM_006426, intron 4 of 13)	9652	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
86861	chr16	67941921	67942830	+	0	NA	exon (NM_000229, exon 5 of 6)	exon (NM_000229, exon 5 of 6)	1745	NM_000229	3931		NM_000229	ENSG00000213398	LCAT	-	lecithin-cholesterol acyltransferase	protein-coding
50875	chr12	49188701	49190230	+	0	NA	promoter-TSS (NM_001270400)	promoter-TSS (NM_001270400)	-141	NM_001270400	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
183580	chr5	80176221	80176480	+	0	NA	intron (NM_001174072, intron 4 of 11)	intron (NM_001174072, intron 4 of 11)	79698	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
37810	chr11	33005001	33005600	+	0	NA	Intergenic	Intergenic	-10578	NM_001077242	91614		NM_139160	ENSG00000121690	DEPDC7	TR2|dJ85M6.4	DEP domain containing 7	protein-coding
20126	chr1	192539751	192539850	+	0	NA	Intergenic	Intergenic	-35973	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
35379	chr11	1305171	1305330	+	0	NA	intron (NM_001318516, intron 1 of 4)	L1MEd|LINE|L1	-2460	NM_001318514	54472		NM_019009	ENSG00000078902	TOLLIP	IL-1RAcPIP	toll interacting protein	protein-coding
31371	chr10	93816351	93816450	+	0	NA	Intergenic	Intergenic	58464	NM_005097	9211		NM_005097	ENSG00000108231	LGI1	ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099	leucine rich glioma inactivated 1	protein-coding
39753	chr11	61844971	61845130	+	0	NA	intron (NM_004265, intron 4 of 11)	(T)n|Simple_repeat|Simple_repeat	16750	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
108675	chr18	76874721	76875550	+	0	NA	intron (NM_001306089, intron 5 of 30)	L2a|LINE|L2	51375	NM_007345	7776		NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding
91272	chr17	4081801	4082200	+	0	NA	intron (NM_015113, intron 17 of 54)	L3|LINE|CR1	61030	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
101478	chr17	67491121	67491780	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-19865	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
9034	chr1	44782251	44782580	+	0	NA	Intergenic	AluSx1|SINE|Alu	4025	NR_001457	94163		NR_001457	ENSG00000281859	SNORD38B	RNU38B|U38B	small nucleolar RNA, C/D box 38B	snoRNA
64410	chr14	24176521	24176830	+	0	NA	intron (NM_001048205, intron 6 of 18).2	MIRb|SINE|MIR	4595	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
186244	chr5	134410971	134412400	+	0	NA	exon (NM_080656, exon 1 of 3)	exon (NM_080656, exon 1 of 3)	196	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
175537	chr4	74560071	74560230	+	0	NA	Intergenic	L1MA10|LINE|L1	115014	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
204841	chr7	5774751	5775230	+	0	NA	intron (NM_001377156, intron 1 of 17)	AluSp|SINE|Alu	6673	NM_001377156	54476		NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding
47333	chr12	1805821	1806080	+	0	NA	intron (NM_172364, intron 29 of 37)	intron (NM_172364, intron 29 of 37)	-14317	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
38359	chr11	44600301	44600500	+	0	NA	intron (NM_002231, intron 4 of 9)	intron (NM_002231, intron 4 of 9)	34737	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
235182	chrX	41328871	41329230	+	0	NA	Intergenic	Intergenic	-4258	NR_126093	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
153780	chr22	29584771	29585130	+	0	NA	Intergenic	AluSz|SINE|Alu	-3837	NM_003634	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
2100	chr1	7983251	7983350	+	0	NA	intron (NM_007262, intron 6 of 6)	intron (NM_007262, intron 6 of 6)	21589	NM_007262	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
227072	chr9	84397171	84397680	+	0	NA	Intergenic	Intergenic	-28698	NM_022127	64078		NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding
181960	chr5	55072651	55073400	+	0	NA	Intergenic	Intergenic	-29621	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
233822	chrX	1479851	1480490	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-26408	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
63601	chr14	20490621	20490950	+	0	NA	Intergenic	(TCCTT)n|Simple_repeat|Simple_repeat	-13448	NM_001012975	338879		NM_001012975	ENSG00000182545	RNASE10	RAH1|RNASE9	ribonuclease A family member 10 (inactive)	protein-coding
143781	chr20	32444451	32444750	+	0	NA	3' UTR (NM_001256798, exon 11 of 11)	3' UTR (NM_001256798, exon 11 of 11)	38890	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
44968	chr11	116852671	116852830	+	0	NA	intron (NM_001281748, intron 21 of 24)	intron (NM_001281748, intron 21 of 24)	-14800	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
207727	chr7	48037021	48037550	+	0	NA	intron (NM_001100159, intron 2 of 8)	MIR|SINE|MIR	1742	NM_001267866	136288		NM_001100159	ENSG00000164746	C7orf57	-	chromosome 7 open reading frame 57	protein-coding
110277	chr19	1818671	1819330	+	0	NA	intron (NM_020695, intron 8 of 15)	intron (NM_020695, intron 8 of 15)	-2762	NR_031730	100302210		NR_031730	ENSG00000284216	MIR1909	MIRN1909|hsa-mir-1909|mir-1909	microRNA 1909	ncRNA
137729	chr2	197785871	197786900	+	0	NA	promoter-TSS (NM_197970)	promoter-TSS (NM_197970)	-73	NM_001284358	66037		NM_033030	ENSG00000152430	BOLL	BOULE	boule homolog, RNA binding protein	protein-coding
130341	chr2	84999201	84999400	+	0	NA	intron (NM_020122, intron 1 of 6)	AluSg|SINE|Alu	28139	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
69814	chr14	99212421	99213030	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	59472	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
165263	chr3	75421821	75422400	+	0	NA	non-coding (NR_024241, exon 8 of 8)	non-coding (NR_024241, exon 8 of 8)	13005	NR_024241	692099		NR_024241	ENSG00000291223	FAM86DP	FAM86D	family with sequence similarity 86 member D, pseudogene	pseudo
159574	chr3	14958801	14959630	+	0	NA	intron (NM_003298, intron 1 of 14)	intron (NM_003298, intron 1 of 14)	-10774	NR_046251	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
194929	chr6	35058651	35058950	+	0	NA	intron (NM_015245, intron 12 of 23)	intron (NM_015245, intron 12 of 23)	82539	NM_001366324	6954		NM_018679	ENSG00000124678	TCP11	D6S230E|FPPR	t-complex 11	protein-coding
167431	chr3	129037771	129038130	+	0	NA	intron (NM_024768, intron 6 of 7)	AluJb|SINE|Alu	-22829	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
8227	chr1	39688201	39688730	+	0	NA	intron (NM_016257, intron 1 of 3)	intron (NM_016257, intron 1 of 3)	2968	NM_016257	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
154354	chr22	32801521	32801780	+	0	NA	promoter-TSS (NM_000362)	promoter-TSS (NM_000362)	-55	NM_000362	7078		NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
10836	chr1	77952171	77952530	+	0	NA	intron (NR_146539, intron 18 of 22)	intron (NR_146539, intron 18 of 22)	26722	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
210074	chr7	96495971	96496130	+	0	NA	intron (NR_163951, intron 3 of 4)	intron (NR_163951, intron 3 of 4)	7473	NR_163949	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
118123	chr19	34772421	34773550	+	0	NA	5' UTR (NM_001007248, exon 1 of 4)	5' UTR (NM_001007248, exon 1 of 4)	230	NM_001007248	148103		NM_001007247	ENSG00000153896	ZNF599	-	zinc finger protein 599	protein-coding
127979	chr2	46888971	46889330	+	0	NA	Intergenic	Intergenic	26656	NM_001171509	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
5739	chr1	26435271	26435430	+	0	NA	intron (NM_205861, intron 2 of 8)	MER102b|DNA|hAT-Charlie	3029	NM_205861	79947		NM_024887	ENSG00000117682	DHDDS	CIT|CPT|DEDSM|DS|HDS|RP59|hCIT	dehydrodolichyl diphosphate synthase subunit	protein-coding
69037	chr14	91839171	91839330	+	0	NA	intron (NM_001128596, intron 1 of 11)	L2c|LINE|L2	-2795	NM_001289134	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
146671	chr20	50509751	50511700	+	0	NA	intron (NM_001278618, intron 1 of 8)	CpG	342	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138171	chr2	202640171	202640330	+	0	NA	intron (NM_173511, intron 1 of 7)	AluSq|SINE|Alu	5281	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
79233	chr16	379001	379380	+	0	NA	intron (NM_021259, intron 1 of 12)	intron (NM_021259, intron 1 of 12)	2788	NM_021259	58986		NM_021259	ENSG00000129925	PGAP6	GPI-PLA2|M83|TMEM6|TMEM8|TMEM8A	post-GPI attachment to proteins 6	protein-coding
11365	chr1	89635171	89635530	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	2230	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
179003	chr4	163558421	163559300	+	0	NA	intron (NM_001166373, intron 6 of 7)	intron (NM_001166373, intron 6 of 7)	54674	NM_017923	55016		NM_017923	ENSG00000145416	MARCHF1	MARCH-I|MARCH1|RNF171	membrane associated ring-CH-type finger 1	protein-coding
40068	chr11	62758921	62759180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2530	NM_002696	5436		NM_002696	ENSG00000168002	POLR2G	RPB19|RPB7|hRPB19|hsRPB7	RNA polymerase II subunit G	protein-coding
91625	chr17	5396801	5397000	+	0	NA	intron (NM_002532, intron 8 of 16)	L1MB8|LINE|L1	-22741	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
89697	chr16	89396351	89396650	+	0	NA	intron (NR_045839, intron 2 of 9)	Charlie1a|DNA|hAT-Charlie	-34418	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
1595	chr1	3622071	3622230	+	0	NA	Intergenic	THE1D-int|LTR|ERVL-MaLR	-2865	NM_182752	127262		NM_182752	ENSG00000158109	TPRG1L	FAM79A|SVAP30|TPRGL|h-mover|mover	tumor protein p63 regulated 1 like	protein-coding
41766	chr11	66723101	66723500	+	0	NA	intron (NM_006946, intron 1 of 37)	intron (NM_006946, intron 1 of 37)	5916	NM_006946	6712		NM_006946	ENSG00000173898	SPTBN2	GTRAP41|SCA5|SCAR14	spectrin beta, non-erythrocytic 2	protein-coding
156670	chr22	41650651	41651750	+	0	NA	intron (NM_001288976, intron 8 of 12)	AluSx|SINE|Alu	29905	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
119055	chr19	39110201	39111080	+	0	NA	3' UTR (NM_001363687, exon 11 of 11)	3' UTR (NM_001363687, exon 11 of 11)	-15146	NM_001014831	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
129335	chr2	68745971	68746600	+	0	NA	intron (NM_001364821, intron 1 of 10)	L2a|LINE|L2	10908	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
199866	chr6	127796871	127797030	+	0	NA	intron (NM_001010923, intron 4 of 5).2	intron (NM_001010923, intron 4 of 5).2	58238	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
75137	chr15	64594171	64594330	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	109031	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
11390	chr1	89668001	89668600	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	35180	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
113808	chr19	10580751	10582150	+	0	NA	intron (NM_001300887, intron 5 of 11)	intron (NM_001300887, intron 5 of 11)	5862	NM_005498	10053		NM_005498	ENSG00000129354	AP1M2	AP1-mu2|HSMU1B|MU-1B|MU1B|mu2	adaptor related protein complex 1 subunit mu 2	protein-coding
177888	chr4	128840621	128841200	+	0	NA	intron (NM_199320, intron 2 of 10)	intron (NM_199320, intron 2 of 10)	29066	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
188702	chr5	157303521	157304630	+	0	NA	intron (NM_014376, intron 7 of 30)	intron (NM_014376, intron 7 of 30)	34751	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
93389	chr17	18268071	18268900	+	0	NA	Intergenic	Intergenic	7375	NM_148886	125170		NM_139162	ENSG00000177427	MIEF2	COXPD49|D3B|MID49|SMCR7	mitochondrial elongation factor 2	protein-coding
17798	chr1	159802971	159803130	+	0	NA	intron (NM_001284217, intron 2 of 10)	intron (NM_001284217, intron 2 of 10)	690	NM_001004310	343413		NM_001004310	ENSG00000181036	FCRL6	FcRH6	Fc receptor like 6	protein-coding
170094	chr3	183018301	183019350	+	0	NA	intron (NR_120639, intron 14 of 15)	intron (NR_120639, intron 14 of 15)	-32907	NM_001308101	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
129881	chr2	73110571	73111050	+	0	NA	intron (NM_001371272, intron 1 of 5)	intron (NM_001371272, intron 1 of 5)	2138	NM_001371272	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
13253	chr1	112710251	112710550	+	0	NA	intron (NM_005167, intron 9 of 9)	intron (NM_005167, intron 9 of 9)	-2997	NM_001042678	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
195609	chr6	37692051	37692900	+	0	NA	intron (NM_153487, intron 1 of 16)	G-rich|Low_complexity|Low_complexity	5408	NM_153487	266727		NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
69944	chr14	99659271	99659880	+	0	NA	exon (NM_001329411, exon 5 of 9)	exon (NM_001329411, exon 5 of 9)	14446	NM_001127258	84439		NM_032425	ENSG00000182218	HHIPL1	KIAA1822|UNQ9245	HHIP like 1	protein-coding
130274	chr2	84873021	84873680	+	0	NA	intron (NM_001307978, intron 1 of 4)	AluSz|SINE|Alu	7734	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
63759	chr14	21245351	21245450	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluSz|SINE|Alu	24042	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
43648	chr11	85651701	85652100	+	0	NA	intron (NM_032273, intron 2 of 4)	AluSx|SINE|Alu	3933	NM_032273	84233		NM_032273	ENSG00000171202	TMEM126A	OPA7	transmembrane protein 126A	protein-coding
82344	chr16	15953701	15954680	+	0	NA	intron (NM_004996, intron 1 of 30)	AluSz|SINE|Alu	4574	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
200972	chr6	139325071	139326150	+	0	NA	Intergenic	Intergenic	-33612	NM_153235	167838		NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding
91124	chr17	3694801	3695100	+	0	NA	intron (NM_002561, intron 1 of 11)	intron (NM_002561, intron 1 of 11)	1205	NM_001204519	5026		NM_002561	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X 5	protein-coding
59036	chr13	20461621	20461880	+	0	NA	intron (NM_015974, intron 3 of 7)	intron (NM_015974, intron 3 of 7)	-27904	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
146727	chr20	50626101	50626300	+	0	NA	intron (NM_080829, intron 2 of 21)	intron (NM_080829, intron 2 of 21)	10718	NM_080829	140876		NM_080829	ENSG00000042062	RIPOR3	C20orf175|C20orf176|FAM65C	RIPOR family member 3	protein-coding
122391	chr19	49424051	49424730	+	0	NA	promoter-TSS (NM_178449)	promoter-TSS (NM_178449)	643	NM_001385187	100507003		NM_001195256	ENSG00000261949	GFY	Goofy	golgi associated olfactory signaling regulator	protein-coding
108392	chr18	69884151	69884800	+	0	NA	intron (NM_006566, intron 4 of 6)	MER67C|LTR|ERV1	63398	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
195959	chr6	41946021	41946680	+	0	NA	intron (NM_001136017, intron 1 of 4)	AluSz6|SINE|Alu	-4502	NM_001287427	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
176116	chr4	83078301	83078700	+	0	NA	Intergenic	AluJb|SINE|Alu	31389	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
149079	chr21	15738701	15738930	+	0	NA	intron (NM_001352560, intron 1 of 23)	LTR2|LTR|ERV1	8833	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
165700	chr3	102078601	102079200	+	0	NA	Intergenic	Intergenic	-84805	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
39061	chr11	47974271	47974780	+	0	NA	Intergenic	Intergenic	-6034	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
239255	chrY	13378321	13378780	+	0	NA	intron (NM_001258265, intron 4 of 23)	AluSz6|SINE|Alu	-100627	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
6845	chr1	31053721	31053980	+	0	NA	intron (NM_014676, intron 2 of 21)	AluSx|SINE|Alu	11867	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
186371	chr5	134906921	134907380	+	0	NA	intron (NM_032151, intron 1 of 3)	intron (NM_032151, intron 1 of 3)	2019	NM_032151	84105		NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
34004	chr10	124690171	124690900	+	0	NA	intron (NM_014661, intron 3 of 4)	intron (NM_014661, intron 3 of 4)	-13493	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
85827	chr16	56996851	56997230	+	0	NA	intron (NR_169520, intron 1 of 47)	AluJb|SINE|Alu	7483	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
181254	chr5	39212721	39212980	+	0	NA	5' UTR (NM_001349333, exon 2 of 20)	5' UTR (NM_001349333, exon 2 of 20)	6713	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
1302	chr1	2382701	2383130	+	0	NA	intron (NR_125361, intron 5 of 6)	intron (NR_125361, intron 5 of 6)	8639	NR_125361	79906		NM_024848	ENSG00000116151	MORN1	-	MORN repeat containing 1	protein-coding
111432	chr19	3802571	3802980	+	0	NA	promoter-TSS (NM_002378)	promoter-TSS (NM_002378)	-976	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
7770	chr1	36182551	36183300	+	0	NA	Intergenic	L2a|LINE|L2	26765	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
99409	chr17	50026751	50028930	+	0	NA	Intergenic	L2a|LINE|L2	27899	NR_038230	284080		NR_038230	ENSG00000246640	PICART1	-	p53 inducible cancer associated RNA transcript 1	ncRNA
48938	chr12	12719701	12720230	+	0	NA	intron (NM_004064, intron 2 of 2)	intron (NM_004064, intron 2 of 2)	2597	NM_004064	1027		NM_004064	ENSG00000111276	CDKN1B	CDKN4|KIP1|MEN1B|MEN4|P27KIP1	cyclin dependent kinase inhibitor 1B	protein-coding
207671	chr7	45105051	45105350	+	0	NA	promoter-TSS (NR_002919)	promoter-TSS (NR_002919)	-158	NR_002991	677796		NR_002991	ENSG00000201772	SNORA5C	ACA5c	small nucleolar RNA, H/ACA box 5C	snoRNA
155324	chr22	38213771	38213930	+	0	NA	5' UTR (NM_012323, exon 2 of 3)	5' UTR (NM_012323, exon 2 of 3)	10830	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
74696	chr15	62344871	62345230	+	0	NA	Intergenic	(GC)n|Simple_repeat|Simple_repeat	2021	NR_106733	102464834		NR_106733	ENSG00000275451	MIR6085	hsa-mir-6085	microRNA 6085	ncRNA
143063	chr20	21513001	21513480	+	0	NA	intron (NM_002509, intron 1 of 1)	CpG	824	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
38217	chr11	36408971	36409980	+	0	NA	intron (NM_001160167, intron 3 of 8)	intron (NM_001160167, intron 3 of 8)	8478	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
48289	chr12	8950801	8951420	+	0	NA	intron (NR_137427, intron 1 of 2)	intron (NR_137427, intron 1 of 2)	1066	NM_001329103	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
90274	chr17	998821	999780	+	0	NA	intron (NM_013337, intron 2 of 3)	intron (NM_013337, intron 2 of 3)	2171	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
166037	chr3	108588801	108590090	+	0	NA	promoter-TSS (NM_014648)	promoter-TSS (NM_014648)	-7	NM_020890	57650		NM_020890	ENSG00000163507	CIP2A	KIAA1524|NOCIVA|p90	cellular inhibitor of PP2A	protein-coding
22524	chr1	221839671	221841080	+	0	NA	non-coding (NR_125989, exon 2 of 4)	non-coding (NR_125989, exon 2 of 4)	291	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
139471	chr2	223993501	223993980	+	0	NA	intron (NR_073116, intron 4 of 9)	intron (NR_073116, intron 4 of 9)	36277	NM_022915	65080		NM_022915	ENSG00000135900	MRPL44	COXPD16|L44MT|MRP-L44|mL44	mitochondrial ribosomal protein L44	protein-coding
171238	chr3	195783751	195784490	+	0	NA	exon (NM_001322468, exon 7 of 42)	exon (NM_001322468, exon 7 of 42)	27809	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
64211	chr14	23055901	23056800	+	0	NA	intron (NM_144985, intron 1 of 12)	intron (NM_144985, intron 1 of 12)	1188	NM_144985	64403		NM_022478	ENSG00000139880	CDH24	CDH11L	cadherin 24	protein-coding
119423	chr19	40284251	40286080	+	0	NA	intron (NM_001243027, intron 1 of 13)	CpG	180	NM_001243027	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
100079	chr17	58301871	58302250	+	0	NA	3' UTR (NM_024418, exon 31 of 31)	3' UTR (NM_024418, exon 31 of 31)	-21125	NM_000250	4353		NM_000250	ENSG00000005381	MPO	-	myeloperoxidase	protein-coding
42687	chr11	72620851	72621430	+	0	NA	intron (NM_001146209, intron 3 of 31)	MIR|SINE|MIR	-6010	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
230077	chr9	127452201	127453050	+	0	NA	intron (NM_001005374, intron 1 of 24)	MIRb|SINE|MIR	370	NM_001005374	90678		NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
32619	chr10	103661201	103662650	+	0	NA	intron (NM_001365079, intron 1 of 8)	intron (NM_001365079, intron 1 of 8)	16290	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
78427	chr15	92714201	92715010	+	0	NA	Intergenic	CpG	-58830	NM_207446	400451		NM_207446	ENSG00000185442	FAM174B	-	family with sequence similarity 174 member B	protein-coding
30904	chr10	87054771	87055380	+	0	NA	intron (NM_001318904, intron 12 of 13)	L2b|LINE|L2	34781	NM_001146157	643161		NM_001146157	ENSG00000188100	FAM25A	bA96C23.5	family with sequence similarity 25 member A	protein-coding
131129	chr2	91443321	91443750	+	0	NA	Intergenic	CpG	216414	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
201127	chr6	142886621	142887100	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	58316	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
162941	chr3	49477701	49477900	+	0	NA	intron (NM_001177640, intron 2 of 3)	AluSq2|SINE|Alu	7533	NM_004393	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
77821	chr15	88628821	88629230	+	0	NA	intron (NM_022767, intron 2 of 3)	intron (NM_022767, intron 2 of 3)	-6607	NR_130134	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
233926	chrX	2214071	2214230	+	0	NA	Intergenic	(GGAA)n|Simple_repeat|Simple_repeat	286389	NM_001171135	9189		NM_004729	ENSG00000214717	ZBED1	ALTE|DREF|TRAMP|hDREF	zinc finger BED-type containing 1	protein-coding
58341	chr12	131539471	131540000	+	0	NA	Intergenic	Intergenic	108386	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
214821	chr7	151240671	151240830	+	0	NA	intron (NM_001003802, intron 9 of 13)	MIR|SINE|MIR	2329	NR_030407	768213		NR_030407	ENSG00000284191	MIR671	MIRN671|hsa-mir-671|mir-671	microRNA 671	ncRNA
195731	chr6	39227121	39227450	+	0	NA	intron (NM_003740, intron 1 of 4)	intron (NM_003740, intron 1 of 4)	2190	NM_003740	8645		NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding
54899	chr12	95998571	95999700	+	0	NA	Intergenic	Intergenic	-2770	NM_001258333	3034		NM_002108	ENSG00000084110	HAL	HIS|HSTD	histidine ammonia-lyase	protein-coding
234873	chrX	28206971	28207130	+	0	NA	Intergenic	L1PA2|LINE|L1	-225601	NM_001017930	139425		NM_001017930	ENSG00000226372	DCAF8L1	WDR42B	DDB1 and CUL4 associated factor 8 like 1	protein-coding
226686	chr9	75094651	75095550	+	0	NA	intron (NM_012383, intron 1 of 9)	L1ME4b|LINE|L1	6586	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
196287	chr6	42987571	42987930	+	0	NA	intron (NM_180977, intron 1 of 13)	intron (NM_180977, intron 1 of 13)	3180	NM_001270476	5528		NM_006245	ENSG00000112640	PPP2R5D	B56D|B56delta|HJS1|MRD35	protein phosphatase 2 regulatory subunit B'delta	protein-coding
160697	chr3	32339901	32340330	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	-51738	NM_181472	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
144553	chr20	35733121	35733600	+	0	NA	intron (NM_184234, intron 3 of 16)	AluSx|SINE|Alu	8900	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
201292	chr6	144333051	144333480	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	41528	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
19075	chr1	170074251	170075350	+	0	NA	promoter-TSS (NM_001375831)	promoter-TSS (NM_001375831)	-62	NM_001204514	22920		NM_014970	ENSG00000075945	KIFAP3	FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1	kinesin associated protein 3	protein-coding
126180	chr2	26608501	26608700	+	0	NA	intron (NM_001029881, intron 3 of 6)	intron (NM_001029881, intron 3 of 6)	32766	NM_001029881	130106		NM_001029881	ENSG00000157884	CIB4	KIP4	calcium and integrin binding family member 4	protein-coding
179530	chr4	184960501	184960700	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	-22160	NR_039660	100616111		NR_039660	ENSG00000263458	MIR4455	-	microRNA 4455	ncRNA
216157	chr8	11692471	11692830	+	0	NA	intron (NM_001308094, intron 1 of 6)	CpG	-11552	NM_001308093	2626		NM_002052	ENSG00000136574	GATA4	ASD2|TACHD|TOF|VSD1	GATA binding protein 4	protein-coding
208993	chr7	74251821	74252500	+	0	NA	intron (NM_002914, intron 2 of 9)	AluY|SINE|Alu	2239	NM_181471	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
70885	chr14	103858221	103858880	+	0	NA	TTS (NR_038436)	TTS (NR_038436)	10829	NR_038436	145216		NR_038436	ENSG00000258735	PPP1R13B-DT	HITT|LINC00637	PPP1R13B divergent transcript	ncRNA
176733	chr4	101337421	101338650	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	-7621	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
77128	chr15	79310771	79311950	+	0	NA	exon (NM_001330376, exon 1 of 3)	exon (NM_001330376, exon 1 of 3)	248	NM_007364	23423		NM_007364	ENSG00000166557	TMED3	C15orf22|P24B|p24g4|p24gamma4|p26	transmembrane p24 trafficking protein 3	protein-coding
100373	chr17	60117901	60118450	+	0	NA	Intergenic	Intergenic	-15256	NR_027408	653653		NR_027408	ENSG00000293358	LOC653653	-	adaptor related protein complex 1 subunit sigma 2 pseudogene	pseudo
805	chr1	1553671	1554050	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	-13236	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
189145	chr5	171334221	171334300	+	0	NA	Intergenic	AluY|SINE|Alu	25012	NM_021025	30012		NM_021025	ENSG00000164438	TLX3	HOX11L2|RNX	T cell leukemia homeobox 3	protein-coding
131994	chr2	100561251	100561350	+	0	NA	Intergenic	Intergenic	-1693	NM_024065	79031		NM_024065	ENSG00000115539	PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin like 3	protein-coding
217747	chr8	30743501	30744780	+	0	NA	promoter-TSS (NM_001282189)	promoter-TSS (NM_001282189)	-24	NM_005671	7993		NM_005671	ENSG00000104691	UBXN8	D8S2298E|REP8|UBXD6	UBX domain protein 8	protein-coding
102075	chr17	74953071	74953230	+	0	NA	intron (NM_030630, intron 15 of 18)	intron (NM_030630, intron 15 of 18)	17252	NM_001272005	347741		NM_178233	ENSG00000182938	OTOP3	-	otopetrin 3	protein-coding
142257	chr20	3165651	3166230	+	0	NA	exon (NM_001365618, exon 4 of 5)	exon (NM_001365618, exon 4 of 5)	-6075	NM_001267584	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
207358	chr7	44082001	44083050	+	0	NA	promoter-TSS (NR_156113)	promoter-TSS (NR_156113)	5	NM_001284330	27434		NM_013284	ENSG00000122678	POLM	Pol Mu|Tdt-N	DNA polymerase mu	protein-coding
52589	chr12	56187251	56187550	+	0	NA	intron (NM_003075, intron 1 of 27)	intron (NM_003075, intron 1 of 27)	2083	NM_001130420	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
143369	chr20	26288501	26288900	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-79467	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
86201	chr16	57997001	57997200	+	0	NA	exon (NM_001384367, exon 3 of 3)	exon (NM_001384367, exon 3 of 3)	-2503	NM_001330568	79650		NM_024598	ENSG00000103005	USB1	C16orf57|HVSL1|Mpn1|PN|hMpn1|hUsb1	U6 snRNA biogenesis phosphodiesterase 1	protein-coding
77783	chr15	86611501	86612300	+	0	NA	intron (NM_152336, intron 22 of 24)	L3|LINE|CR1	-294932	NR_046012	727915		NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
57113	chr12	121095571	121096480	+	0	NA	Intergenic	CpG	-36851	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
46504	chr11	128411671	128412030	+	0	NA	Intergenic	Intergenic	110460	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
37940	chr11	34337171	34337330	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	20760	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
186658	chr5	138577401	138577750	+	0	NA	Intergenic	AluSz|SINE|Alu	-2174	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
80796	chr16	3282001	3284400	+	0	NA	promoter-TSS (NM_005741)	promoter-TSS (NM_005741)	-291	NM_005741	10127		NM_005741	ENSG00000006194	ZNF263	FPM315|ZKSCAN12|ZSCAN44	zinc finger protein 263	protein-coding
199962	chr6	127950821	127951980	+	0	NA	Intergenic	Intergenic	-32769	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
108143	chr18	62528301	62529380	+	0	NA	intron (NM_017742, intron 1 of 13)	intron (NM_017742, intron 1 of 13)	5815	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
81098	chr16	4360501	4361300	+	0	NA	intron (NM_001351729, intron 19 of 27)	intron (NM_001351729, intron 19 of 27)	-9579	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
231144	chr9	129864171	129864480	+	0	NA	intron (NM_001110303, intron 9 of 25)	AluJo|SINE|Alu	-5280	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
166210	chr3	111998771	111999380	+	0	NA	promoter-TSS (NM_001008273)	promoter-TSS (NM_001008273)	-85	NM_001008273	29114		NM_013259	ENSG00000144834	TAGLN3	NP22|NP24|NP25	transgelin 3	protein-coding
6547	chr1	28641601	28641800	+	0	NA	intron (NM_005644, intron 1 of 5)	AluJb|SINE|Alu	1367	NM_005644	6883		NM_005644	ENSG00000120656	TAF12	TAF2J|TAFII20	TATA-box binding protein associated factor 12	protein-coding
24440	chr1	243713001	243713200	+	0	NA	intron (NM_005465, intron 2 of 13)	intron (NM_005465, intron 2 of 13)	130182	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
212792	chr7	130150371	130150950	+	0	NA	Intergenic	Intergenic	8929	NR_149034	100128325		NR_149033	ENSG00000229196	LINC03008	-	long intergenic non-protein coding RNA 3008	ncRNA
61638	chr13	73859751	73860450	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	273829	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
223776	chr8	144538071	144538230	+	0	NA	intron (NM_025251, intron 5 of 10)	intron (NM_025251, intron 5 of 10)	-9039	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
150256	chr21	41612771	41612930	+	0	NA	Intergenic	Intergenic	32375	NR_164474	105372808		NR_164474	ENSG00000286027	PCSEAT	PRCAT38	prostate cancer expressed EZH2 associated transcript	ncRNA
47155	chr12	766571	767500	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSx1|SINE|Alu	14112	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
149373	chr21	29476301	29476750	+	0	NA	Intergenic	AluSq2|SINE|Alu	-19522	NR_146594	54147		NR_146594	ENSG00000234293	BACH1-IT3	C21orf8|NCRNA00097	BACH1 intronic transcript 3	ncRNA
341	chr1	1000501	1001210	+	0	NA	promoter-TSS (NM_021170)	promoter-TSS (NM_021170)	-758	NM_001142467	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
158502	chr3	3108701	3108900	+	0	NA	intron (NM_175726, intron 1 of 11)	intron (NM_175726, intron 1 of 11)	1574	NM_001243099	3568		NM_000564	ENSG00000091181	IL5RA	CD125|CDw125|HSIL5R3|IL5R	interleukin 5 receptor subunit alpha	protein-coding
29844	chr10	72342221	72342480	+	0	NA	intron (NR_157570, intron 3 of 8)	intron (NR_157570, intron 3 of 8)	12569	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
186908	chr5	139585051	139585400	+	0	NA	intron (NM_181838, intron 2 of 7)	AluJo|SINE|Alu	23886	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
18680	chr1	167263551	167264280	+	0	NA	intron (NM_001365848, intron 2 of 17)	intron (NM_001365848, intron 2 of 17)	43029	NM_002697	5451		NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|Oct1Z|oct-1B	POU class 2 homeobox 1	protein-coding
176634	chr4	99847271	99847830	+	0	NA	intron (NM_014395, intron 3 of 8)	intron (NM_014395, intron 3 of 8)	30723	NM_014395	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
224483	chr9	16421721	16421980	+	0	NA	intron (NM_001317940, intron 5 of 5)	intron (NM_001317940, intron 5 of 5)	-145537	NM_001364979	100129385		NM_001271829	ENSG00000205549	LINC03041	C9orf92|Em:AL513424.1	long intergenic non-protein coding RNA 3041	ncRNA
237175	chrX	107705201	107705700	+	0	NA	Intergenic	LTR79|LTR|ERVL	11058	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
141348	chr2	240602671	240602830	+	0	NA	Intergenic	Intergenic	-2680	NM_001195382	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
225085	chr9	33306101	33306300	+	0	NA	intron (NM_147134, intron 4 of 15)	intron (NM_147134, intron 4 of 15)	15684	NM_147134	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
124395	chr19	58399371	58399530	+	0	NA	promoter-TSS (NR_149054)	promoter-TSS (NR_149054)	-753	NR_149054	110806301		NR_149054	ENSG00000268307	LINC02560	-	long intergenic non-protein coding RNA 2560	ncRNA
217592	chr8	29569721	29570050	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	178224	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
79488	chr16	773151	773450	+	0	NA	Intergenic	Intergenic	3117	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
1339	chr1	2470771	2471750	+	0	NA	intron (NM_001303012, intron 1 of 21)	intron (NM_001303012, intron 1 of 21)	3809	NM_001303012	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
100046	chr17	58082621	58084300	+	0	NA	promoter-TSS (NM_080677)	promoter-TSS (NM_080677)	41	NM_080677	140735		NM_080677	ENSG00000264364	DYNLL2	DNCL1B|Dlc2|RSPH22	dynein light chain LC8-type 2	protein-coding
159225	chr3	12905701	12905900	+	0	NA	intron (NM_014869, intron 12 of 13)	intron (NM_014869, intron 12 of 13)	-20589	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
41823	chr11	67030701	67031300	+	0	NA	intron (NM_001318773, intron 3 of 8)	intron (NM_001318773, intron 3 of 8)	7866	NM_177963	91683		NM_177963	ENSG00000173227	SYT12	SYT11|sytXII	synaptotagmin 12	protein-coding
226263	chr9	67858721	67859450	+	0	NA	5' UTR (NM_032250, exon 1 of 15)	5' UTR (NM_032250, exon 1 of 15)	154	NM_032250	84210		NM_032250	ENSG00000260691	ANKRD20A1	ANKRD20A	ankyrin repeat domain 20 family member A1	protein-coding
221796	chr8	127973971	127974600	+	0	NA	intron (NR_003367, intron 3 of 8)	intron (NR_003367, intron 3 of 8)	13652	NR_031610	100302161		NR_031610	ENSG00000221771	MIR1205	MIRN1205|hsa-mir-1205	microRNA 1205	ncRNA
158935	chr3	10140021	10140550	+	0	NA	Intergenic	AluSx|SINE|Alu	-1493	NM_001354723	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
41992	chr11	67385871	67386030	+	0	NA	intron (NR_024469, intron 2 of 3)	AluJb|SINE|Alu	-6036	NM_004584	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
95602	chr17	37491151	37492080	+	0	NA	intron (NM_007026, intron 1 of 2)	intron (NM_007026, intron 1 of 2)	1724	NM_007026	11072		NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
73742	chr15	45276951	45277550	+	0	NA	3' UTR (NM_004212, exon 18 of 18)	3' UTR (NM_004212, exon 18 of 18)	1972	NR_120335	101928414		NR_120335	ENSG00000259520	SLC28A2-AS1	-	SLC28A2 antisense RNA 1	ncRNA
16125	chr1	153649101	153650280	+	0	NA	Intergenic	Intergenic	-8964	NR_052020	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
99521	chr17	50333321	50333850	+	0	NA	Intergenic	Intergenic	-12541	NM_022167	64132		NM_022167	ENSG00000015532	XYLT2	PXYLT2|SOS|XT-II|XT2|xylT-II	xylosyltransferase 2	protein-coding
154182	chr22	31336721	31337630	+	0	NA	intron (NM_014323, intron 2 of 4)	MIRb|SINE|MIR	1826	NR_110542	101929760		NR_110542	ENSG00000228839	PIK3IP1-DT	PIK3IP1-AS1	PIK3IP1 divergent transcript	ncRNA
129014	chr2	64866571	64866730	+	0	NA	Intergenic	Intergenic	-3019	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
81964	chr16	11866221	11867450	+	0	NA	Intergenic	FAM|SINE|Alu	-15293	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
77056	chr15	78875201	78876130	+	0	NA	intron (NM_001265604, intron 1 of 11)	AluSx1|SINE|Alu	2676	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
123724	chr19	55051071	55052900	+	0	NA	intron (NM_001145971, intron 3 of 6).10	AluSx1|SINE|Alu	11163	NR_027382	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
66457	chr14	61549321	61549830	+	0	NA	intron (NM_006255, intron 13 of 13)	intron (NM_006255, intron 13 of 13)	20619	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
199616	chr6	119340971	119341400	+	0	NA	intron (NM_005907, intron 2 of 12)	intron (NM_005907, intron 2 of 12)	8576	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
214243	chr7	148879271	148879430	+	0	NA	intron (NM_001203248, intron 1 of 19)	AluSz|SINE|Alu	4135	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
149046	chr21	15054121	15054380	+	0	NA	intron (NM_003489, intron 1 of 3)	intron (NM_003489, intron 1 of 3)	10750	NM_003489	8204		NM_003489	ENSG00000180530	NRIP1	CAKUT3|RIP140	nuclear receptor interacting protein 1	protein-coding
198299	chr6	100355021	100355280	+	0	NA	Intergenic	L1PA2|LINE|L1	109306	NM_001374769	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
229217	chr9	114897971	114899630	+	0	NA	intron (NM_001252290, intron 4 of 4)	LTR67B|LTR|ERVL	31791	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
66935	chr14	65476151	65476950	+	0	NA	intron (NM_004480, intron 2 of 9)	intron (NM_004480, intron 2 of 9)	5448	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
73308	chr15	41890171	41891130	+	0	NA	intron (NM_016642, intron 3 of 67)	intron (NM_016642, intron 3 of 67)	-2127	NR_135681	105370792		NR_135681	ENSG00000174171	LOC105370792	-	uncharacterized LOC105370792	ncRNA
220594	chr8	100905171	100905630	+	0	NA	Intergenic	Intergenic	45171	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
206914	chr7	38180571	38180730	+	0	NA	intron (NM_001363344, intron 2 of 8)	MIRb|SINE|MIR	2405	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
25606	chr10	8062751	8063050	+	0	NA	intron (NM_002051, intron 3 of 5)	intron (NM_002051, intron 3 of 5)	8212	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
45789	chr11	119314801	119316600	+	0	NA	intron (NM_006500, intron 1 of 15)	intron (NM_006500, intron 1 of 15)	1430	NM_006500	4162		NM_006500	ENSG00000076706	MCAM	CD146|HEMCAM|METCAM|MUC18|MelCAM	melanoma cell adhesion molecule	protein-coding
35717	chr11	1944321	1944630	+	0	NA	Intergenic	L1MC1|LINE|L1	-2857	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
41781	chr11	66848371	66848530	+	0	NA	TTS (NM_000920)	TTS (NM_000920)	5009	NM_001032279	9986		NM_005133	ENSG00000173653	RCE1	FACE2|RCE1A|RCE1B	Ras converting CAAX endopeptidase 1	protein-coding
28623	chr10	58360001	58360580	+	0	NA	intron (NM_003338, intron 1 of 6)	intron (NM_003338, intron 1 of 6)	-24853	NR_073073	7019		NM_003201	ENSG00000108064	TFAM	MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	transcription factor A, mitochondrial	protein-coding
133974	chr2	130730671	130731200	+	0	NA	TTS (NM_207364)	TTS (NM_207364)	1865	NM_207364	344561		NM_207364	ENSG00000173302	GPR148	BTR|PGR6	G protein-coupled receptor 148	protein-coding
145158	chr20	38842001	38842230	+	0	NA	intron (NM_001172735, intron 2 of 9)	MIR|SINE|MIR	36418	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
214327	chr7	149283751	149283850	+	0	NA	non-coding (NR_144366, exon 7 of 7)	non-coding (NR_144366, exon 7 of 7)	-1481	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
173147	chr4	6672601	6674400	+	0	NA	promoter-TSS (NR_158178)	promoter-TSS (NR_158178)	381	NR_134665	105374366		NR_134664	ENSG00000251580	LINC02482	-	long intergenic non-protein coding RNA 2482	ncRNA
210829	chr7	100896741	100898050	+	0	NA	promoter-TSS (NM_001367919)	promoter-TSS (NM_001367919)	-401	NM_001367919	43		NM_000665	ENSG00000087085	ACHE	ACEE|ARACHE|N-ACHE|YT	acetylcholinesterase (Yt blood group)	protein-coding
123623	chr19	54553021	54553280	+	0	NA	Intergenic	Intergenic	-19838	NM_006866	11027		NM_006866	ENSG00000239998	LILRA2	CD85H|ILT1|LIR-7|LIR7	leukocyte immunoglobulin like receptor A2	protein-coding
136212	chr2	174579121	174579380	+	0	NA	intron (NM_001375837, intron 3 of 4)	AluSp|SINE|Alu	18554	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
212547	chr7	128860151	128860680	+	0	NA	intron (NR_149055, intron 1 of 3)	intron (NR_149055, intron 1 of 3)	2211	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
203272	chr6	169720271	169720950	+	0	NA	intron (NM_133325, intron 2 of 11)	L1MB3|LINE|L1	3890	NM_133325	55274		NM_018288	ENSG00000130024	PHF10	BAF45A|SMARCG4|XAP135	PHD finger protein 10	protein-coding
3621	chr1	16373551	16374050	+	0	NA	intron (NR_073500, intron 1 of 1)	AluJb|SINE|Alu	6558	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
23000	chr1	226122501	226123350	+	0	NA	Intergenic	Intergenic	-25078	NR_146443	107985353		NR_146443	ENSG00000234478	ACBD3-AS1	-	ACBD3 antisense RNA 1	ncRNA
136983	chr2	190482501	190482900	+	0	NA	intron (NM_001375987, intron 3 of 6)	intron (NM_001375987, intron 3 of 6)	13207	NM_001375993	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
194467	chr6	33198501	33198700	+	0	NA	intron (NM_021976, intron 2 of 9).2	MER91C|DNA|hAT-Tip100	2065	NM_001270401	6257		NM_021976	ENSG00000204231	RXRB	DAUDI6|H-2RIIBP|NR2B2|RCoR-1|RXR-beta|RXRbeta	retinoid X receptor beta	protein-coding
7642	chr1	35576971	35579030	+	0	NA	intron (NM_178548, intron 3 of 6)	intron (NM_178548, intron 3 of 6)	4686	NM_178548	339488		NM_178548	ENSG00000116819	TFAP2E	AP-2epsilon|AP2E	transcription factor AP-2 epsilon	protein-coding
12815	chr1	109913971	109914130	+	0	NA	intron (NM_172210, intron 1 of 8)	L2c|LINE|L2	3201	NM_172210	1435		NM_000757	ENSG00000184371	CSF1	CSF-1|MCSF|PG-M-CSF	colony stimulating factor 1	protein-coding
235354	chrX	44329571	44330430	+	0	NA	intron (NM_025184, intron 1 of 14)	AluJb|SINE|Alu	13672	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
88032	chr16	81316621	81316880	+	0	NA	intron (NM_001377486, intron 1 of 9)	L2a|LINE|L2	1788	NM_022041	8139		NM_022041	ENSG00000261609	GAN	GAN1|GIG|KLHL16	gigaxonin	protein-coding
153606	chr22	27880001	27880300	+	0	NA	intron (NM_001284278, intron 7 of 11)	MIRb|SINE|MIR	39064	NM_001284278	23760		NM_012399	ENSG00000180957	PITPNB	PI-TP-beta|PtdInsTP|VIB1B	phosphatidylinositol transfer protein beta	protein-coding
135702	chr2	168961471	168961880	+	0	NA	intron (NM_003742, intron 18 of 27)	intron (NM_003742, intron 18 of 27)	60384	NM_001081686	57818		NM_021176	ENSG00000152254	G6PC2	IGRP	glucose-6-phosphatase catalytic subunit 2	protein-coding
33444	chr10	119030201	119031880	+	0	NA	3' UTR (NM_199461, exon 1 of 1)	3' UTR (NM_199461, exon 1 of 1)	1326	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
106930	chr18	26255851	26256150	+	0	NA	intron (NM_001293725, intron 1 of 14)	intron (NM_001293725, intron 1 of 14)	29555	NM_005640	6875		NM_005640	ENSG00000141384	TAF4B	SPGF13|TAF2C2|TAFII105	TATA-box binding protein associated factor 4b	protein-coding
122436	chr19	49477251	49477750	+	0	NA	intron (NM_001204502, intron 5 of 8)	AluSx1|SINE|Alu	2914	NM_001204503	2323		NM_001459	ENSG00000090554	FLT3LG	FL|FLG3L|FLT3L	fms related receptor tyrosine kinase 3 ligand	protein-coding
133038	chr2	112137471	112138050	+	0	NA	promoter-TSS (NM_001128165)	promoter-TSS (NM_001128165)	-625	NM_001128165	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
76760	chr15	76973271	76973800	+	0	NA	Intergenic	Intergenic	-21145	NM_001321137	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
118558	chr19	36140701	36142580	+	0	NA	intron (NM_001302633, intron 1 of 9)	intron (NM_001302633, intron 1 of 9)	650	NM_001302633	826		NM_001749	ENSG00000126247	CAPNS1	CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1|PPH6	calpain small subunit 1	protein-coding
199134	chr6	111712171	111713500	+	0	NA	intron (NM_001370529, intron 3 of 11)	L1ME3A|LINE|L1	46296	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
127842	chr2	45494751	45494930	+	0	NA	intron (NM_018079, intron 14 of 20)	intron (NM_018079, intron 14 of 20)	116427	NM_018079	55133		NM_018079	ENSG00000068784	SRBD1	-	S1 RNA binding domain 1	protein-coding
81328	chr16	4737651	4737950	+	0	NA	exon (NM_139170, exon 3 of 10)	exon (NM_139170, exon 3 of 10)	3263	NM_139170	146562		NM_139170	ENSG00000166246	DNAAF8	C16orf71|Daap1	dynein axonemal assembly factor 8	protein-coding
223749	chr8	144512401	144512650	+	0	NA	exon (NM_004260, exon 17 of 21)	exon (NM_004260, exon 17 of 21)	3455	NM_138431	113655		NM_138431	ENSG00000167700	MFSD3	SLC33A2	major facilitator superfamily domain containing 3	protein-coding
104071	chr17	80221651	80221830	+	0	NA	exon (NM_173626, exon 3 of 18)	exon (NM_173626, exon 3 of 18)	1313	NM_001166348	284129		NM_173626	ENSG00000181045	SLC26A11	-	solute carrier family 26 member 11	protein-coding
214570	chr7	150603401	150604050	+	0	NA	Intergenic	Intergenic	28660	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
92148	chr17	7652701	7653800	+	0	NA	intron (NM_001678, intron 1 of 6)	intron (NM_001678, intron 1 of 6)	2324	NM_001678	482		NM_001678	ENSG00000129244	ATP1B2	AMOG	ATPase Na+/K+ transporting subunit beta 2	protein-coding
35925	chr11	2442251	2442950	+	0	NA	Intergenic	L1M4|LINE|L1	-2408	NM_000218	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
98085	chr17	45582821	45584090	+	0	NA	Intergenic	Intergenic	18407	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
153956	chr22	30353851	30353950	+	0	NA	intron (NM_005877, intron 1 of 15)	intron (NM_005877, intron 1 of 15)	-2724	NM_001318335	550631		NM_001017437	ENSG00000187860	CCDC157	-	coiled-coil domain containing 157	protein-coding
212825	chr7	130436621	130436880	+	0	NA	intron (NM_001257160, intron 1 of 2)	HAL1|LINE|L1	4266	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
60384	chr13	40943701	40944100	+	0	NA	exon (NM_001145353, exon 5 of 8)	exon (NM_001145353, exon 5 of 8)	-22126	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
166804	chr3	122579271	122579930	+	0	NA	intron (NM_001113523, intron 1 of 11)	intron (NM_001113523, intron 1 of 11)	1950	NM_001308320	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
164945	chr3	71237901	71238100	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	7077	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
175585	chr4	75665451	75665780	+	0	NA	intron (NM_203505, intron 1 of 11)	(CACA)n|Simple_repeat|Simple_repeat	7544	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
26835	chr10	24701571	24701730	+	0	NA	intron (NR_160021, intron 2 of 26)	L2a|LINE|L2	21098	NM_001367453	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
68692	chr14	90401871	90402680	+	0	NA	intron (NM_006888, intron 3 of 5)	intron (NM_006888, intron 3 of 5)	4025	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
76795	chr15	77025571	77025730	+	0	NA	intron (NR_135552, intron 5 of 11)	intron (NR_135552, intron 5 of 11)	30524	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
92841	chr17	16214071	16214230	+	0	NA	intron (NM_006311, intron 1 of 45)	intron (NM_006311, intron 1 of 45)	1384	NM_006311	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
170406	chr3	185498271	185499730	+	0	NA	promoter-TSS (NM_080652)	promoter-TSS (NM_080652)	35	NM_080652	90407		NM_080652	ENSG00000163900	TMEM41A	2900010K02Rik	transmembrane protein 41A	protein-coding
90754	chr17	2045301	2045980	+	0	NA	Intergenic	Intergenic	3618	NM_080822	124641		NM_080822	ENSG00000262664	OVCA2	-	OVCA2 serine hydrolase domain containing	protein-coding
27190	chr10	28560471	28561130	+	0	NA	intron (NM_100486, intron 3 of 12)	MER58A|DNA|hAT-Charlie	27682	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
63279	chr13	113965701	113966330	+	0	NA	intron (NM_001365455, intron 5 of 6)	(ATGATG)n|Simple_repeat|Simple_repeat	8061	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
86886	chr16	67992971	67994600	+	0	NA	promoter-TSS (NM_001369657)	promoter-TSS (NM_001369657)	-391	NM_001369657	64174		NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
205253	chr7	8125371	8126650	+	0	NA	intron (NR_146928, intron 13 of 14)	intron (NR_146928, intron 13 of 14)	136157	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
110844	chr19	2551901	2552100	+	0	NA	intron (NM_052847, intron 3 of 4)	MER1A|DNA|hAT-Charlie	75873	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
194838	chr6	34414151	34414450	+	0	NA	intron (NM_001202470, intron 5 of 8)	intron (NM_001202470, intron 5 of 8)	11769	NM_001204091	6204		NM_001014	ENSG00000124614	RPS10	DBA9|S10|eS10	ribosomal protein S10	protein-coding
230226	chr9	127867851	127868150	+	0	NA	3' UTR (NM_000476, exon 7 of 7)	3' UTR (NM_000476, exon 7 of 7)	1495	NR_039819	100616429		NR_039819	ENSG00000263979	MIR4672	-	microRNA 4672	ncRNA
99670	chr17	50728621	50728930	+	0	NA	intron (NM_001330330, intron 1 of 10)	AluSz6|SINE|Alu	9172	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
19493	chr1	175141971	175142530	+	0	NA	intron (NM_022093, intron 17 of 18)	intron (NM_022093, intron 17 of 18)	50526	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
13773	chr1	117093921	117094290	+	0	NA	promoter-TSS (NR_030640)	promoter-TSS (NR_030640)	-538	NR_030640	100126331		NR_030640	ENSG00000215930	MIR942	MIRN942|hsa-mir-942|mir-942	microRNA 942	ncRNA
215728	chr8	1764901	1765100	+	0	NA	promoter-TSS (NR_134303)	promoter-TSS (NR_134303)	-416	NR_134303	101927752		NR_134302	ENSG00000253982	CLN8-AS1	-	CLN8 antisense RNA 1	ncRNA
129387	chr2	68810351	68810650	+	0	NA	intron (NM_001364820, intron 4 of 9)	intron (NM_001364820, intron 4 of 9)	35590	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
21548	chr1	206167351	206167550	+	0	NA	Intergenic	Intergenic	35389	NR_134239	729533		NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
125499	chr2	12606421	12606680	+	0	NA	Intergenic	Intergenic	-110322	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
221768	chr8	127914401	127914800	+	0	NA	intron (NR_003367, intron 2 of 8)	L1MB5|LINE|L1	34123	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
183819	chr5	83340371	83340730	+	0	NA	intron (NM_022550, intron 7 of 7)	MLT1D|LTR|ERVL-MaLR	-131124	NM_001164097	1462		NM_004385	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
27165	chr10	28529351	28529650	+	0	NA	intron (NR_033805, intron 1 of 2)	AluSc|SINE|Alu	2854	NR_033805	220906		NR_033805		WAC-AS1	-	WAC antisense RNA 1 (head to head)	ncRNA
219350	chr8	70315801	70316200	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	87390	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
186877	chr5	139516021	139516330	+	0	NA	Intergenic	AluSq2|SINE|Alu	-33417	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
43426	chr11	77490201	77490400	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-16206	NM_001128620	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
54525	chr12	92121351	92121450	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	20313	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
229030	chr9	114305601	114306280	+	0	NA	intron (NM_032888, intron 57 of 60)	intron (NM_032888, intron 57 of 60)	-17158	NM_000607	5004		NM_000607	ENSG00000229314	ORM1	A1AG1|AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
93187	chr17	17805521	17806200	+	0	NA	intron (NM_030665, intron 4 of 5)	intron (NM_030665, intron 4 of 5)	7685	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
122897	chr19	50551721	50552500	+	0	NA	intron (NM_001080457, intron 1 of 2)	intron (NM_001080457, intron 1 of 2)	-1068	NM_001348568	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
236382	chrX	71098201	71098800	+	0	NA	intron (NM_005938, intron 1 of 2)	intron (NM_005938, intron 1 of 2)	2649	NM_001170931	4303		NM_005938	ENSG00000184481	FOXO4	AFX|AFX1|MLLT7	forkhead box O4	protein-coding
61014	chr13	48128551	48129480	+	0	NA	Intergenic	Intergenic	-33874	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
111842	chr19	4567551	4567950	+	0	NA	Intergenic	L2a|LINE|L2	-8066	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
24942	chr10	1253651	1254530	+	0	NA	intron (NM_018702, intron 4 of 9)	intron (NM_018702, intron 4 of 9)	94322	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
128170	chr2	50144271	50144450	+	0	NA	intron (NM_001135659, intron 19 of 23)	intron (NM_001135659, intron 19 of 23)	-170157	NM_001320156	9378		NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
198277	chr6	99611071	99611800	+	0	NA	intron (NM_021620, intron 3 of 3)	intron (NM_021620, intron 3 of 3)	4602	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
141367	chr2	240686221	240686480	+	0	NA	promoter-TSS (NR_149021)	promoter-TSS (NR_149021)	16	NR_149021	285191		NR_149021		LOC285191	-	uncharacterized LOC285191	ncRNA
4654	chr1	22144801	22145200	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-1903	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
224158	chr9	4953221	4953480	+	0	NA	Intergenic	L1PA4|LINE|L1	-31736	NM_001322195	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
91748	chr17	6754951	6755050	+	0	NA	promoter-TSS (NM_001353135)	promoter-TSS (NM_001353135)	-447	NM_001353135	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
135506	chr2	161995551	161996250	+	0	NA	intron (NR_166824, intron 23 of 25)	intron (NR_166824, intron 23 of 25)	78315	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
228676	chr9	107339301	107339850	+	0	NA	Intergenic	Intergenic	54806	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
90046	chr16	89917521	89919330	+	0	NA	promoter-TSS (NM_002386)	promoter-TSS (NM_002386)	-437	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
37442	chr11	17734721	17735330	+	0	NA	promoter-TSS (NM_004976)	promoter-TSS (NM_004976)	244	NM_001112741	3746		NM_004976	ENSG00000129159	KCNC1	EPM7|KV3.1|KV4|NGK2	potassium voltage-gated channel subfamily C member 1	protein-coding
21306	chr1	204503201	204503880	+	0	NA	Intergenic	Intergenic	-8735	NM_001377334	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
203994	chr7	1784951	1785050	+	0	NA	Intergenic	Intergenic	-42690	NR_120510	101927125		NR_120508	ENSG00000236081	ELFN1-AS1	MYCLo-2	ELFN1 antisense RNA 1	ncRNA
130485	chr2	85561001	85562230	+	0	NA	promoter-TSS (NM_001142269)	promoter-TSS (NM_001142269)	-122	NM_000821	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
133292	chr2	113591151	113591250	+	0	NA	intron (NR_024077, intron 2 of 10)	intron (NR_024077, intron 2 of 10)	7547	NR_024077	375260		NM_198943	ENSG00000291134	WASH2P	FAM39B	WASP family homolog 2, pseudogene	pseudo
219665	chr8	80499271	80500030	+	0	NA	exon (NM_001105539, exon 2 of 6)	exon (NM_001105539, exon 2 of 6)	13424	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
2980	chr1	11981901	11982480	+	0	NA	intron (NM_014874, intron 2 of 18)	intron (NM_014874, intron 2 of 18)	1746	NM_014874	9927		NM_014874	ENSG00000116688	MFN2	CMT2A|CMT2A2|CMT2A2A|CMT2A2B|CPRP1|HMSN6A|HSG|MARF|MSL	mitofusin 2	protein-coding
70700	chr14	103188921	103189400	+	0	NA	promoter-TSS (NR_033938)	promoter-TSS (NR_033938)	-132	NR_033938	100131366		NR_033938	ENSG00000251533	LINC00605	-	long intergenic non-protein coding RNA 605	ncRNA
130618	chr2	85999121	85999930	+	0	NA	Intergenic	Intergenic	106361	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
173072	chr4	6182521	6183080	+	0	NA	intron (NM_144720, intron 1 of 12)	intron (NM_144720, intron 1 of 12)	11819	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
36098	chr11	3036421	3036750	+	0	NA	intron (NR_046580, intron 1 of 1)	L1MB3|LINE|L1	4399	NM_001378140	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
164671	chr3	67016821	67017280	+	0	NA	Intergenic	Intergenic	18743	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
101926	chr17	74467601	74468780	+	0	NA	intron (NM_001256841, intron 1 of 5)	AluSp|SINE|Alu	1556	NM_001256841	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
57096	chr12	121038301	121040030	+	0	NA	promoter-TSS (NM_003733)	promoter-TSS (NM_003733)	77	NM_003733	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
20042	chr1	185404421	185404680	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-69511	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
175359	chr4	69831751	69832050	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	28245	NM_005420	6783		NM_005420	ENSG00000109193	SULT1E1	EST|EST-1|ST1E1|STE	sulfotransferase family 1E member 1	protein-coding
200788	chr6	137884301	137886730	+	0	NA	Intergenic	AluSg4|SINE|Alu	-17282	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
94946	chr17	32078871	32079030	+	0	NA	Intergenic	AluY|SINE|Alu	38614	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
91971	chr17	7406271	7407030	+	0	NA	Intergenic	Intergenic	-1195	NM_020795	57555		NM_020795	ENSG00000169992	NLGN2	-	neuroligin 2	protein-coding
95979	chr17	39166471	39166880	+	0	NA	promoter-TSS (NM_001143968)	promoter-TSS (NM_001143968)	-514	NM_001143968	390790		NM_001143968	ENSG00000141748	ARL5C	ARL12	ADP ribosylation factor like GTPase 5C	protein-coding
217768	chr8	32868451	32868900	+	0	NA	Intergenic	Intergenic	146840	NM_001322197	3084		NM_004495	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
184186	chr5	95826021	95826280	+	0	NA	Intergenic	Intergenic	-3277	NM_001243659	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
686	chr1	1386871	1387580	+	0	NA	non-coding (NR_135154, exon 13 of 13)	non-coding (NR_135154, exon 13 of 13)	11117	NM_001350497	81669		NM_030937	ENSG00000221978	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
31201	chr10	91224551	91224650	+	0	NA	intron (NM_032373, intron 2 of 9)	L2a|LINE|L2	3937	NM_032373	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
229854	chr9	126332021	126332480	+	0	NA	intron (NM_033446, intron 1 of 9)	L2b|LINE|L2	5421	NM_001011703	89853		NM_033446	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
35209	chr11	814051	814150	+	0	NA	Intergenic	Intergenic	2419	NR_002585	619565		NR_002585	ENSG00000199785	SNORA52	ACA52	small nucleolar RNA, H/ACA box 52	snoRNA
219801	chr8	81277701	81278350	+	0	NA	Intergenic	MIRc|SINE|MIR	-2511	NM_001444	2171		NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
69983	chr14	99953001	99953550	+	0	NA	Intergenic	Intergenic	-18147	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
91302	chr17	4249421	4249830	+	0	NA	intron (NM_001330063, intron 1 of 24)	intron (NM_001330063, intron 1 of 24)	14222	NM_001257999	51479		NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
165757	chr3	105750071	105750480	+	0	NA	intron (NM_001321813, intron 5 of 18)	intron (NM_001321813, intron 5 of 18)	117316	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
19569	chr1	179142851	179143680	+	0	NA	promoter-TSS (NM_001136000)	promoter-TSS (NM_001136000)	-189	NM_005158	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
190123	chr5	177983601	177984000	+	0	NA	Intergenic	Intergenic	12442	NM_006261	5626		NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
103144	chr17	77405871	77407080	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	1398	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
82383	chr16	16074601	16075000	+	0	NA	intron (NM_004996, intron 14 of 30)	intron (NM_004996, intron 14 of 30)	125184	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
185973	chr5	133111021	133111830	+	0	NA	Intergenic	Intergenic	59412	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
161270	chr3	39274821	39275080	+	0	NA	intron (NM_001171174, intron 1 of 1)	AluSq2|SINE|Alu	5086	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
20554	chr1	198710371	198710530	+	0	NA	intron (NM_002838, intron 11 of 32)	L1M4|LINE|L1	71410	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
66610	chr14	63663471	63663650	+	0	NA	Intergenic	MER52A|LTR|ERV1	-21689	NM_001382426	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
19738	chr1	181151551	181152250	+	0	NA	Intergenic	Intergenic	-22584	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
120875	chr19	45557021	45557480	+	0	NA	intron (NM_025136, intron 1 of 1)	intron (NM_025136, intron 1 of 1)	27552	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
61837	chr13	76473371	76473800	+	0	NA	Intergenic	Intergenic	412820	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
120340	chr19	43562251	43563750	+	0	NA	intron (NM_006297, intron 2 of 16)	MIR|SINE|MIR	12527	NM_006297	7515		NM_006297	ENSG00000073050	XRCC1	RCC|SCAR26	X-ray repair cross complementing 1	protein-coding
73546	chr15	43977101	43977380	+	0	NA	intron (NM_001286491, intron 1 of 14)	intron (NM_001286491, intron 1 of 14)	-99069	NR_003571	728758		NR_003571		PIN4P1	-	peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1	pseudo
77744	chr15	85745671	85745830	+	0	NA	3' UTR (NM_001270546, exon 29 of 29)	3' UTR (NM_001270546, exon 29 of 29)	12975	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
217796	chr8	33554721	33555750	+	0	NA	intron (NM_024787, intron 2 of 5)	AluSq2|SINE|Alu	11893	NM_024787	79845		NM_024787	ENSG00000133874	RNF122	-	ring finger protein 122	protein-coding
209336	chr7	76235001	76235700	+	0	NA	intron (NM_001291831, intron 2 of 15)	G-rich|Low_complexity|Low_complexity	33454	NM_001110199	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
43847	chr11	87298751	87299250	+	0	NA	intron (NM_022918, intron 7 of 14)	AluSq4|SINE|Alu	261066	NM_001168724	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
142081	chr20	2461751	2462050	+	0	NA	3' UTR (NM_003091, exon 7 of 7)	3' UTR (NM_003091, exon 7 of 7)	1147	NR_003684	100113378		NR_003684		SNORD119	-	small nucleolar RNA, C/D box 119	snoRNA
181311	chr5	40333301	40333780	+	0	NA	Intergenic	Intergenic	281249	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
125477	chr2	12436601	12437150	+	0	NA	intron (NR_110196, intron 4 of 5)	L1ME4b|LINE|L1	237745	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
221592	chr8	125431901	125432880	+	0	NA	intron (NM_001282985, intron 1 of 2)	intron (NM_001282985, intron 1 of 2)	181	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
175053	chr4	53377001	53378350	+	0	NA	promoter-TSS (NM_001376753)	promoter-TSS (NM_001376753)	34	NM_001376783	81608		NM_030917	ENSG00000145216	FIP1L1	FIP1|Rhe|hFip1	factor interacting with PAPOLA and CPSF1	protein-coding
83411	chr16	27211001	27211450	+	0	NA	intron (NM_024773, intron 2 of 7)	intron (NM_024773, intron 2 of 7)	7250	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
174455	chr4	39713871	39714250	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluJb|SINE|Alu	15924	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
21937	chr1	207867521	207868500	+	0	NA	Intergenic	Intergenic	43115	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
171176	chr3	195657601	195658800	+	0	NA	intron (NR_003265, intron 1 of 14)	CpG	161	NR_003265	727956		NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	SDHA pseudogene 2	pseudo
169578	chr3	170429251	170429350	+	0	NA	intron (NM_001185056, intron 2 of 2)	intron (NM_001185056, intron 2 of 2)	6197	NR_106886	102465497		NR_106886	ENSG00000283474	MIR6828	hsa-mir-6828	microRNA 6828	ncRNA
98959	chr17	48652151	48652450	+	0	NA	Intergenic	L1ME3|LINE|L1	-19741	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
186899	chr5	139573971	139574330	+	0	NA	intron (NM_181838, intron 2 of 7)	AluSq|SINE|Alu	12811	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
188381	chr5	152113221	152113840	+	0	NA	intron (NR_109876, intron 1 of 2)	intron (NR_109876, intron 1 of 2)	154632	NR_109876	101927115		NR_109876	ENSG00000254226	LINC01933	CTB-12O2.1	long intergenic non-protein coding RNA 1933	ncRNA
115005	chr19	14061521	14061980	+	0	NA	intron (NM_001145028, intron 1 of 6)	intron (NM_001145028, intron 1 of 6)	326	NM_001145028	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
196051	chr6	42103171	42103330	+	0	NA	3' UTR (NM_001164446, exon 5 of 5)	3' UTR (NM_001164446, exon 5 of 5)	39370	NM_001164446	647024		NM_001164446	ENSG00000188112	C6orf132	LncCCLM|bA7K24.2	chromosome 6 open reading frame 132	protein-coding
160646	chr3	31566771	31567330	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	34125	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
114403	chr19	12635371	12636080	+	0	NA	Intergenic	LTR47B3|LTR|ERVL	24805	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
122879	chr19	50507571	50508250	+	0	NA	intron (NM_138334, intron 2 of 4)	intron (NM_138334, intron 2 of 4)	3281	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
161543	chr3	42652371	42652530	+	0	NA	intron (NR_125400, intron 1 of 2)	intron (NR_125400, intron 1 of 2)	-1247	NM_145166	92999		NM_145166	ENSG00000114853	ZBTB47	ZNF651	zinc finger and BTB domain containing 47	protein-coding
29883	chr10	72875271	72875530	+	0	NA	intron (NM_138357, intron 6 of 7)	intron (NM_138357, intron 6 of 7)	-18339	NM_152635	170392		NM_152635	ENSG00000138315	OIT3	LZP	oncoprotein induced transcript 3	protein-coding
3094	chr1	12198971	12199900	+	0	NA	intron (NM_001066, intron 8 of 9)	MIRc|SINE|MIR	7722	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
152080	chr22	19755371	19756030	+	0	NA	Intergenic	CpG	-1003	NM_005992	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
179362	chr4	183406521	183407480	+	0	NA	Intergenic	L1PA5|LINE|L1	-37636	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
84600	chr16	30666121	30666780	+	0	NA	intron (NM_001105079, intron 11 of 17)	intron (NM_001105079, intron 11 of 17)	8019	NM_001105079	64319		NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding
44598	chr11	108470571	108470730	+	0	NA	Intergenic	AluY|SINE|Alu	-3119	NR_147053	160140		NM_152587	ENSG00000166323	C11orf65	MFI	chromosome 11 open reading frame 65	protein-coding
116606	chr19	18273701	18276040	+	0	NA	promoter-TSS (NM_025249)	promoter-TSS (NM_025249)	-418	NM_001145305	80726		NM_025249	ENSG00000130518	IQCN	KIAA1683|SPGF78	IQ motif containing N	protein-coding
62578	chr13	99981351	99981680	+	0	NA	promoter-TSS (NM_007129)	promoter-TSS (NM_007129)	-269	NM_007129	7546		NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
133127	chr2	112661101	112661380	+	0	NA	intron (NM_005415, intron 10 of 10)	intron (NM_005415, intron 10 of 10)	15301	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
42181	chr11	67953801	67954200	+	0	NA	Intergenic	MIR|SINE|MIR	50097	NM_030930	81622		NM_030930	ENSG00000110057	UNC93B1	IIAE1|UNC93|UNC93B|Unc-93B1	unc-93 homolog B1, TLR signaling regulator	protein-coding
203129	chr6	166786721	166786980	+	0	NA	intron (NM_001318936, intron 2 of 22)	intron (NM_001318936, intron 2 of 22)	75675	NM_001006932	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
56755	chr12	120151701	120151900	+	0	NA	intron (NM_006836, intron 33 of 57)	intron (NM_006836, intron 33 of 57)	3699	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
183952	chr5	88204001	88204830	+	0	NA	intron (NM_001289007, intron 8 of 12)	intron (NM_001289007, intron 8 of 12)	64430	NM_153354	153396		NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
216100	chr8	11090971	11091230	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	-24011	NR_134308	101929269		NR_134308	ENSG00000254839	LOC101929269	-	uncharacterized LOC101929269	ncRNA
160990	chr3	37247971	37248330	+	0	NA	intron (NM_001172713, intron 1 of 22)	intron (NM_001172713, intron 1 of 22)	-3955	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
164358	chr3	58083901	58084300	+	0	NA	intron (NM_001164319, intron 4 of 44)	AluSc8|SINE|Alu	75678	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
6990	chr1	31816871	31817250	+	0	NA	Intergenic	Intergenic	-1009	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
148064	chr20	63273821	63274450	+	0	NA	intron (NM_001281483, intron 1 of 12)	intron (NM_001281483, intron 1 of 12)	1322	NM_175609	55738		NM_018209	ENSG00000101199	ARFGAP1	ARF1GAP|HRIHFB2281	ADP ribosylation factor GTPase activating protein 1	protein-coding
234091	chrX	9336571	9337150	+	0	NA	Intergenic	Intergenic	-126435	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
142200	chr20	3037101	3037500	+	0	NA	intron (NM_080841, intron 23 of 23)	intron (NM_080841, intron 23 of 23)	-6322	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
132489	chr2	105974871	105975230	+	0	NA	Intergenic	L2a|LINE|L2	-90638	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
85628	chr16	54930681	54931530	+	0	NA	promoter-TSS (NM_001252197)	promoter-TSS (NM_001252197)	-94	NM_001252197	10265		NM_005853	ENSG00000176842	IRX5	HMMS|IRX-2a|IRXB2	iroquois homeobox 5	protein-coding
202487	chr6	158285601	158285800	+	0	NA	Intergenic	Intergenic	-26765	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
116956	chr19	18857651	18858080	+	0	NA	intron (NM_001297549, intron 15 of 23)	intron (NM_001297549, intron 15 of 23)	25906	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
64842	chr14	35196501	35197230	+	0	NA	intron (NM_001256678, intron 4 of 6)	intron (NM_001256678, intron 4 of 6)	74313	NM_001256679	9692		NM_014672	ENSG00000100890	PRORP	COXPD54|KIAA0391|MRPP3	protein only RNase P catalytic subunit	protein-coding
8230	chr1	39690071	39690230	+	0	NA	intron (NM_016257, intron 1 of 3)	intron (NM_016257, intron 1 of 3)	1283	NM_016257	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
152201	chr22	20118851	20118950	+	0	NA	intron (NM_001278641, intron 1 of 5)	intron (NM_001278641, intron 1 of 5)	1155	NM_001278641	5902		NM_002882	ENSG00000099901	RANBP1	HTF9A	RAN binding protein 1	protein-coding
46713	chr11	128859721	128860250	+	0	NA	intron (NM_153766, intron 1 of 2)	intron (NM_153766, intron 1 of 2)	7311	NM_153765	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
183602	chr5	80204851	80205350	+	0	NA	intron (NM_001174072, intron 1 of 11)	MER61F|LTR|ERV1	50948	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
42888	chr11	73361951	73363200	+	0	NA	exon (NM_014786, exon 14 of 21)	exon (NM_014786, exon 14 of 21)	-13824	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
53106	chr12	57770321	57770580	+	0	NA	intron (NM_005371, intron 2 of 5)	AluSz|SINE|Alu	1655	NM_023033	4234		NM_005371	ENSG00000037897	METTL1	C12orf1|TRM8|TRMT8|YDL201w	methyltransferase 1, tRNA methylguanosine	protein-coding
21455	chr1	205503101	205503650	+	0	NA	Intergenic	Intergenic	-1294	NM_002596	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
29721	chr10	72081321	72081680	+	0	NA	intron (NM_014767, intron 2 of 11)	intron (NM_014767, intron 2 of 11)	7051	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
182364	chr5	60539271	60539630	+	0	NA	intron (NR_024617, intron 3 of 3)	L1M7|LINE|L1	-43164	NM_001364599	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
4911	chr1	23839651	23839750	+	0	NA	Intergenic	AluSc8|SINE|Alu	-14241	NM_001166059	3155		NM_000191	ENSG00000117305	HMGCL	HL|HMGCL1	3-hydroxy-3-methylglutaryl-CoA lyase	protein-coding
419	chr1	1082121	1082450	+	0	NA	3' UTR (NM_001330306, exon 12 of 12)	3' UTR (NM_001330306, exon 12 of 12)	-7979	NM_001205252	401934		NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding
3404	chr1	15756321	15757130	+	0	NA	promoter-TSS (NM_001350151)	promoter-TSS (NM_001350151)	87	NM_001350151	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
205889	chr7	25112421	25113300	+	0	NA	Intergenic	AluSg7|SINE|Alu	12400	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
135887	chr2	171146851	171147150	+	0	NA	intron (NM_001136554, intron 1 of 20)	intron (NM_001136554, intron 1 of 20)	13893	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
195812	chr6	41192471	41192880	+	0	NA	intron (NM_024807, intron 4 of 4)	intron (NM_024807, intron 4 of 4)	8474	NM_024807	79865		NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
3938	chr1	18069921	18070180	+	0	NA	intron (NR_125946, intron 2 of 2)	intron (NR_125946, intron 2 of 2)	4393	NR_125946	101927876		NR_125946	ENSG00000261781	LINC01654	-	long intergenic non-protein coding RNA 1654	ncRNA
215539	chr7	158783801	158784730	+	0	NA	intron (NM_020728, intron 6 of 21)	intron (NM_020728, intron 6 of 21)	45244	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
34192	chr10	128211931	128212900	+	0	NA	Intergenic	Intergenic	-73535	NR_120619	101927381		NR_120619	ENSG00000280953	LINC01163	TCONS_00017722	long intergenic non-protein coding RNA 1163	ncRNA
78846	chr15	100131971	100132130	+	0	NA	exon (NM_139057, exon 12 of 22)	exon (NM_139057, exon 12 of 22)	209925	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
48547	chr12	10223121	10223630	+	0	NA	TTS (NM_031412)	TTS (NM_031412)	10498	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
57326	chr12	121689021	121689750	+	0	NA	Intergenic	AluJr|SINE|Alu	-16741	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
162675	chr3	48926021	48926280	+	0	NA	intron (NM_001349209, intron 2 of 15)	intron (NM_001349209, intron 2 of 15)	-6765	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
206563	chr7	35657001	35657400	+	0	NA	intron (NM_022373, intron 5 of 8)	L1MA4A|LINE|L1	37935	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
19820	chr1	182786651	182787280	+	0	NA	Intergenic	Intergenic	-2484	NM_001200052	80896		NM_030769	ENSG00000135838	NPL	C112|C1orf13|NAL|NPL1	N-acetylneuraminate pyruvate lyase	protein-coding
80261	chr16	2223001	2224330	+	0	NA	promoter-TSS (NM_004424)	promoter-TSS (NM_004424)	74	NM_004424	1877		NM_004424	ENSG00000167967	E4F1	E4F	E4F transcription factor 1	protein-coding
230142	chr9	127738621	127739050	+	0	NA	exon (NM_001142534, exon 10 of 10)	exon (NM_001142534, exon 10 of 10)	-3541	NM_001134430	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
209760	chr7	87212221	87213250	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	6997	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
56275	chr12	112109201	112110280	+	0	NA	promoter-TSS (NM_024953)	promoter-TSS (NM_024953)	-957	NM_024953	80018		NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N-alpha-acetyltransferase 25, NatB auxiliary subunit	protein-coding
137691	chr2	197486271	197486750	+	0	NA	TTS (NR_132787)	TTS (NR_132787)	393	NR_132787	106635539		NR_132787		SNORA105A	-	small nucleolar RNA, H/ACA box 105A	snoRNA
221747	chr8	127738601	127739500	+	0	NA	intron (NM_001354870, intron 2 of 2)	intron (NM_001354870, intron 2 of 2)	2819	NM_002467	4609		NM_002467	ENSG00000136997	MYC	MRTL|MYCC|bHLHe39|c-Myc	MYC proto-oncogene, bHLH transcription factor	protein-coding
209491	chr7	76629001	76629200	+	0	NA	Intergenic	L2|LINE|L2	-1797	NM_152992	22932		NM_012230	ENSG00000146707	POMZP3	POM-ZP3	POM121 and ZP3 fusion	protein-coding
54656	chr12	93249371	93249900	+	0	NA	intron (NR_040096, intron 2 of 4)	HUERS-P1-int|LTR|ERV1	75269	NR_120492	102724933		NR_120492		LINC02412	-	long intergenic non-protein coding RNA 2412	ncRNA
75511	chr15	66469621	66470080	+	0	NA	intron (NM_002755, intron 5 of 10)	MER4-int|LTR|ERV1	27184	NR_039737	100616149		NR_039737	ENSG00000266589	MIR4512	-	microRNA 4512	ncRNA
71519	chr14	106135001	106135200	+	0	NA	Intergenic	LTR19C|LTR|ERV1	-152574	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
31886	chr10	100270401	100270900	+	0	NA	Intergenic	(TTTGT)n|Simple_repeat|Simple_repeat	-3012	NM_001303407	55280		NM_018294	ENSG00000095485	CWF19L1	C19L1|SCAR17|hDrn1	CWF19 like cell cycle control factor 1	protein-coding
166128	chr3	111324771	111325530	+	0	NA	Intergenic	Intergenic	-217047	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
135381	chr2	160482121	160483250	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	11122	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
84479	chr16	30479151	30479250	+	0	NA	exon (NM_002209, exon 5 of 31)	exon (NM_002209, exon 5 of 31)	6458	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
32311	chr10	102155901	102156300	+	0	NA	intron (NM_004741, intron 1 of 12)	AluSx1|SINE|Alu	3711	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
85446	chr16	50552101	50552300	+	0	NA	intron (NM_033119, intron 3 of 9)	MIRb|SINE|MIR	3804	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
201038	chr6	142075651	142076000	+	0	NA	exon (NM_001324308, exon 3 of 3)	exon (NM_001324308, exon 3 of 3)	-57334	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
14424	chr1	144366301	144366880	+	0	NA	Intergenic	L1ME3G|LINE|L1	7069	NM_001164261	645142		NM_001164261	ENSG00000289549	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding
223465	chr8	144018351	144018650	+	0	NA	intron (NM_198572, intron 1 of 4)	L2c|LINE|L2	6220	NM_001134374	375686		NM_198572	ENSG00000186583	SPATC1	SPATA15	spermatogenesis and centriole associated 1	protein-coding
100097	chr17	58319151	58319530	+	0	NA	intron (NM_001261835, intron 12 of 31)	intron (NM_001261835, intron 12 of 31)	-6110	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
92212	chr17	7861151	7861250	+	0	NA	3' UTR (NM_001330110, exon 4 of 4)	3' UTR (NM_001330110, exon 4 of 4)	3197	NM_001330110	124637		NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
230099	chr9	127567971	127568130	+	0	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	1023	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
209517	chr7	76999701	77000200	+	0	NA	intron (NR_023383, intron 2 of 10)	CpG	19128	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
139519	chr2	224566071	224566630	+	0	NA	intron (NM_003590, intron 1 of 15)	Tigger2|DNA|TcMar-Tigger	3605	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
93681	chr17	19332671	19332830	+	0	NA	intron (NM_001102664, intron 7 of 7)	L2c|LINE|L2	11824	NR_031591	100302256		NR_031591	ENSG00000221540	MIR1180	MIRN1180|hsa-mir-1180|mir-1180	microRNA 1180	ncRNA
3340	chr1	15434751	15435880	+	0	NA	Intergenic	Intergenic	-3128	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
80592	chr16	2909671	2909830	+	0	NA	Intergenic	AluSx|SINE|Alu	-2181	NM_001308068	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
169986	chr3	179562521	179563950	+	0	NA	intron (NM_178042, intron 1 of 13)	CpG	309	NM_004301	86		NM_004301	ENSG00000136518	ACTL6A	ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K|SMARCN1	actin like 6A	protein-coding
236701	chrX	77785571	77786700	+	0	NA	promoter-TSS (NM_000489)	promoter-TSS (NM_000489)	81	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
200294	chr6	132816671	132817030	+	0	NA	promoter-TSS (NR_002435)	promoter-TSS (NR_002435)	48	NR_002435	594838		NR_002435	ENSG00000221500	SNORD100	HBII-429	small nucleolar RNA, C/D box 100	snoRNA
181817	chr5	52773071	52773450	+	0	NA	Intergenic	Intergenic	-14656	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
15164	chr1	148966051	148966350	+	0	NA	intron (NM_001198834, intron 10 of 43)	L2c|LINE|L2	13743	NM_001350520	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
212596	chr7	129054121	129055980	+	0	NA	promoter-TSS (NR_002187)	promoter-TSS (NR_002187)	61	NM_001382222	23534		NM_012470	ENSG00000064419	TNPO3	IPO12|LGMD1F|LGMDD2|MTR10A|TRN-SR|TRN-SR2|TRNSR	transportin 3	protein-coding
210410	chr7	100018301	100018500	+	0	NA	intron (NM_001287055, intron 1 of 3)	intron (NM_001287055, intron 1 of 3)	2804	NR_144477	7586		NM_003439	ENSG00000106261	ZKSCAN1	KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33	zinc finger with KRAB and SCAN domains 1	protein-coding
238372	chrX	149932921	149933900	+	0	NA	intron (NM_001013845, intron 4 of 4)	intron (NM_001013845, intron 4 of 4)	3837	NM_001351114	101927685		NM_001351114	ENSG00000283463	HSFX4	-	heat shock transcription factor family, X-linked member 4	protein-coding
223572	chr8	144268001	144268230	+	0	NA	exon (NM_001080514, exon 2 of 2)	exon (NM_001080514, exon 2 of 2)	1662	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
40564	chr11	64344921	64345180	+	0	NA	exon (NM_032251, exon 14 of 27)	exon (NM_032251, exon 14 of 27)	-3146	NR_106977	102466815		NR_106977	ENSG00000278359	MIR7155	hsa-mir-7155	microRNA 7155	ncRNA
38709	chr11	46670901	46672300	+	0	NA	intron (NM_001205121, intron 16 of 16)	AluSg7|SINE|Alu	29019	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
130992	chr2	87780551	87780950	+	0	NA	intron (NM_001382344, intron 20 of 22).2	intron (NM_001382344, intron 20 of 22).2	32657	NM_001032392	5343		NM_001032392	ENSG00000183281	PLGLB1	PLGL|PLGP1|PRGB|PRP-B	plasminogen like B1	protein-coding
173196	chr4	6783301	6784350	+	0	NA	intron (NM_001100590, intron 1 of 8)	intron (NM_001100590, intron 1 of 8)	1093	NM_001100590	9778		NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding
158706	chr3	8111121	8111430	+	0	NA	Intergenic	Intergenic	-94968	NR_110131	101927394		NR_110131	ENSG00000227110	LOC101927394	-	uncharacterized LOC101927394	ncRNA
22216	chr1	212513571	212513730	+	0	NA	Intergenic	MIRb|SINE|MIR	-32044	NR_125985	101929565		NR_125985	ENSG00000228067	LINC01740	-	long intergenic non-protein coding RNA 1740	ncRNA
228649	chr9	107213301	107213900	+	0	NA	Intergenic	Intergenic	-69679	NM_002874	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
188887	chr5	159916101	159916780	+	0	NA	promoter-TSS (NM_000679)	promoter-TSS (NM_000679)	-42	NM_000679	147		NM_000679	ENSG00000170214	ADRA1B	ADRA1|ALPHA1BAR	adrenoceptor alpha 1B	protein-coding
36328	chr11	3876321	3876580	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluJb|SINE|Alu	20388	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
149097	chr21	16195651	16195750	+	0	NA	intron (NR_136543, intron 1 of 4)	intron (NR_136543, intron 1 of 4)	1321	NR_027791	388815		NR_027790	ENSG00000215386	MIR99AHG	C21orf34|C21orf35|DILA1|LINC00478|MONC	mir-99a-let-7c cluster host gene	ncRNA
83150	chr16	23452421	23453930	+	0	NA	promoter-TSS (NM_153603)	promoter-TSS (NM_153603)	14	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
56622	chr12	118307101	118307550	+	0	NA	intron (NM_001346487, intron 1 of 20)	intron (NM_001346487, intron 1 of 20)	52380	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
141955	chr20	1287471	1288000	+	0	NA	intron (NM_014723, intron 2 of 5)	intron (NM_014723, intron 2 of 5)	21441	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
110434	chr19	1975551	1975850	+	0	NA	intron (NM_001319, intron 2 of 11)	intron (NM_001319, intron 2 of 11)	-21151	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
219307	chr8	70073701	70073900	+	0	NA	Intergenic	L1ME4b|LINE|L1	-2548	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
188506	chr5	154868501	154869100	+	0	NA	intron (NM_001301077, intron 3 of 6)	intron (NM_001301077, intron 3 of 6)	10173	NM_001301075	9337		NM_004779	ENSG00000155508	CNOT8	CAF1|CALIF|Caf1b|POP2|hCAF1	CCR4-NOT transcription complex subunit 8	protein-coding
180252	chr5	1652451	1652550	+	0	NA	Intergenic	Intergenic	-18495	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
8121	chr1	39221521	39221780	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	137483	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
39303	chr11	58618201	58618480	+	0	NA	3' UTR (NM_001197051, exon 11 of 11)	3' UTR (NM_001197051, exon 11 of 11)	-4325	NM_000614	1270		NM_000614	ENSG00000242689	CNTF	HCNTF	ciliary neurotrophic factor	protein-coding
128723	chr2	61793351	61794030	+	0	NA	Intergenic	Intergenic	60370	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
194448	chr6	33169871	33170300	+	0	NA	exon (NM_080679, exon 46 of 63).6	exon (NM_080679, exon 46 of 63).6	22382	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
12540	chr1	108592101	108593430	+	0	NA	intron (NM_001010883, intron 1 of 10)	intron (NM_001010883, intron 1 of 10)	32665	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
187080	chr5	140177921	140178380	+	0	NA	intron (NM_032412, intron 1 of 2)	intron (NM_032412, intron 1 of 2)	2962	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
53939	chr12	71779421	71779680	+	0	NA	intron (NM_014999, intron 4 of 6)	MIRb|SINE|MIR	24687	NM_014999	23011		NM_014999	ENSG00000080371	RAB21	-	RAB21, member RAS oncogene family	protein-coding
212568	chr7	128892451	128892780	+	0	NA	intron (NM_199349, intron 15 of 20)	intron (NM_199349, intron 15 of 20)	18094	NM_001366122	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
163290	chr3	50327901	50329350	+	0	NA	promoter-TSS (NM_007275)	promoter-TSS (NM_007275)	-387	NM_007275	11334		NM_007275	ENSG00000114383	TUSC2	C3orf11|FUS1|PAP|PDAP2	tumor suppressor 2, mitochondrial calcium regulator	protein-coding
141605	chr2	241659071	241659930	+	0	NA	intron (NM_013325, intron 7 of 12)	intron (NM_013325, intron 7 of 12)	21807	NM_013325	23192		NM_013325	ENSG00000168397	ATG4B	APG4B|AUTL1|HsAPG4B	autophagy related 4B cysteine peptidase	protein-coding
173168	chr4	6696001	6697000	+	0	NA	intron (NM_005980, intron 1 of 1)	intron (NM_005980, intron 1 of 1)	2622	NM_005980	6286		NM_005980	ENSG00000163993	S100P	MIG9	S100 calcium binding protein P	protein-coding
148408	chr20	63944771	63945100	+	0	NA	intron (NR_148442, intron 5 of 15)	intron (NR_148442, intron 5 of 15)	-2209	NR_030377	693232		NR_030377	ENSG00000207554	MIR647	MIRN647|hsa-mir-647	microRNA 647	ncRNA
65338	chr14	50229371	50229900	+	0	NA	intron (NM_006939, intron 1 of 22)	FLAM_C|SINE|Alu	1943	NM_006939	6655		NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
17433	chr1	156666401	156666800	+	0	NA	Intergenic	L2b|LINE|L2	10807	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
145483	chr20	43845651	43846080	+	0	NA	Intergenic	AluSz|SINE|Alu	-48853	NR_134577	105372626		NR_134577	ENSG00000233277	LINC01728	-	long intergenic non-protein coding RNA 1728	ncRNA
16236	chr1	153947921	153948600	+	0	NA	exon (NM_181715, exon 14 of 14)	exon (NM_181715, exon 14 of 14)	-1542	NM_014856	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
142814	chr20	16574721	16575950	+	0	NA	Intergenic	Intergenic	-1887	NM_001199865	55614		NM_024704	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
29130	chr10	68526051	68526150	+	0	NA	intron (NM_001324314, intron 1 of 9)	LTR5_Hs|LTR|ERVK	1423	NM_001324313	8034		NM_152707	ENSG00000122912	SLC25A16	D10S105E|GDA|GDC|HGT.1|ML7|hGP|hML7	solute carrier family 25 member 16	protein-coding
144085	chr20	33722471	33722630	+	0	NA	Intergenic	AluJb|SINE|Alu	-2240	NM_183397	11264		NM_007238	ENSG00000101417	PXMP4	PMP24	peroxisomal membrane protein 4	protein-coding
235211	chrX	41358701	41359850	+	0	NA	intron (NR_126093, intron 18 of 18)	intron (NR_126093, intron 18 of 18)	25109	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
172451	chr4	1982501	1982700	+	0	NA	TTS (NM_133331)	TTS (NM_133331)	3877	NR_030641	100126332		NR_030641	ENSG00000284587	MIR943	MIRN943|hsa-mir-943	microRNA 943	ncRNA
107195	chr18	35971751	35973500	+	0	NA	promoter-TSS (NM_001201474)	promoter-TSS (NM_001201474)	0	NM_001201475	83608		NM_031446	ENSG00000141428	C18orf21	HsT3108|PNAS-124|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
2019	chr1	7070421	7070680	+	0	NA	intron (NM_001349608, intron 2 of 21)	intron (NM_001349608, intron 2 of 21)	285096	NM_001349609	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
92724	chr17	14295001	14295200	+	0	NA	Intergenic	Intergenic	-5981	NR_130138	9953		NM_006041	ENSG00000125430	HS3ST3B1	3-OST-3B|3OST3B1|h3-OST-3B	heparan sulfate-glucosamine 3-sulfotransferase 3B1	protein-coding
53288	chr12	64403051	64403150	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	-1292	NM_007235	11260		NM_007235	ENSG00000184575	XPOT	XPO3	exportin for tRNA	protein-coding
198026	chr6	90137801	90138000	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	158943	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
157364	chr22	44700321	44700580	+	0	NA	intron (NM_001198721, intron 2 of 9)	AluSq2|SINE|Alu	-1748	NM_181334	553158		NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
58649	chr12	132517071	132518530	+	0	NA	intron (NM_001382740, intron 2 of 11)	L2a|LINE|L2	12394	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171092	chr3	195493671	195493830	+	0	NA	Intergenic	L1MC1|LINE|L1	49575	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
207945	chr7	51471321	51471580	+	0	NA	Intergenic	Intergenic	-78194	NR_157843	107986794		NR_157843		LOC107986794	-	uncharacterized LOC107986794	ncRNA
41490	chr11	66243801	66244950	+	0	NA	3' UTR (NM_018026, exon 24 of 24)	3' UTR (NM_018026, exon 24 of 24)	-12919	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
236639	chrX	74614101	74615000	+	0	NA	promoter-TSS (NM_016120)	promoter-TSS (NM_016120)	74	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
106637	chr18	22466901	22467580	+	0	NA	Intergenic	Intergenic	-49325	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
122846	chr19	50460501	50460700	+	0	NA	intron (NM_004533, intron 24 of 27)	L1MB5|LINE|L1	-15907	NM_206538	284361		NM_175063	ENSG00000161671	EMC10	C19orf63|HSM1|HSS1|NEDDFAS	ER membrane protein complex subunit 10	protein-coding
33483	chr10	119082271	119082800	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1718	NM_003750	8661		NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding
154205	chr22	31488721	31491580	+	0	NA	promoter-TSS (NM_001164502)	promoter-TSS (NM_001164502)	-308	NM_019843	56478		NM_019843	ENSG00000184708	EIF4ENIF1	4E-T|Clast4	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding
225553	chr9	35846271	35846630	+	0	NA	intron (NM_016446, intron 9 of 10)	intron (NM_016446, intron 9 of 10)	17222	NM_001042590	51754		NM_016446	ENSG00000137103	TMEM8B	C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6|NGX6a	transmembrane protein 8B	protein-coding
187201	chr5	140667571	140667830	+	0	NA	intron (NM_017706, intron 1 of 6)	intron (NM_017706, intron 1 of 6)	2901	NM_017706	54853		NM_017706	ENSG00000120314	WDR55	-	WD repeat domain 55	protein-coding
131272	chr2	96089471	96089630	+	0	NA	Intergenic	Intergenic	27021	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
127432	chr2	42142521	42142980	+	0	NA	non-coding (NR_110584, exon 4 of 4)	non-coding (NR_110584, exon 4 of 4)	-26603	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
141861	chr20	642801	643030	+	0	NA	Intergenic	(TGA)n|Simple_repeat|Simple_repeat	10285	NM_080725	140809		NM_080725	ENSG00000271303	SRXN1	C20orf139|Npn3|SRX|SRX1	sulfiredoxin 1	protein-coding
52247	chr12	54411171	54412030	+	0	NA	intron (NR_120486, intron 3 of 3)	intron (NR_120486, intron 3 of 3)	7666	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
128624	chr2	61247271	61247430	+	0	NA	intron (NM_014709, intron 49 of 79)	intron (NM_014709, intron 49 of 79)	69932	NR_152212	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
160679	chr3	32245251	32245550	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	6720	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
104893	chr17	81888251	81888350	+	0	NA	exon (NM_005782, exon 5 of 6)	exon (NM_005782, exon 5 of 6)	-2490	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
36964	chr11	11266021	11266280	+	0	NA	Intergenic	Intergenic	87100	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
183420	chr5	78294001	78295200	+	0	NA	promoter-TSS (NM_001271769)	promoter-TSS (NM_001271769)	98	NM_003664	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
60343	chr13	40780771	40780950	+	0	NA	Intergenic	AluJr|SINE|Alu	-8751	NM_014252	10166		NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|LNC-HC|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
201974	chr6	152189751	152190180	+	0	NA	intron (NM_033071, intron 126 of 145)	Tigger1|DNA|TcMar-Tigger	-4587	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
230393	chr9	128104501	128104700	+	0	NA	intron (NR_049766, intron 5 of 9)	MIRb|SINE|MIR	6118	NR_049766	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
41465	chr11	66126861	66127780	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	57048	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
171149	chr3	195608571	195608730	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-24710	NM_001647	347		NM_001647	ENSG00000189058	APOD	-	apolipoprotein D	protein-coding
74859	chr15	63543301	63543500	+	0	NA	intron (NR_046342, intron 4 of 15)	intron (NR_046342, intron 4 of 15)	38807	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
87517	chr16	71880701	71881900	+	0	NA	promoter-TSS (NM_001318239)	promoter-TSS (NM_001318239)	-824	NM_001318239	55565		NM_017530	ENSG00000102984	ZNF821	-	zinc finger protein 821	protein-coding
190770	chr6	498471	499300	+	0	NA	intron (NM_018303, intron 24 of 27)	intron (NM_018303, intron 24 of 27)	107133	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
151860	chr22	18586801	18587000	+	0	NA	Intergenic	AluJr4|SINE|Alu	25019	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
138973	chr2	218276751	218277050	+	0	NA	intron (NM_001321432, intron 10 of 11)	intron (NM_001321432, intron 10 of 11)	3288	NR_106768	102465256		NR_106768	ENSG00000284173	MIR6513	hsa-mir-6513|mir-6513	microRNA 6513	ncRNA
226328	chr9	69158271	69158430	+	0	NA	intron (NM_001369870, intron 2 of 23)	AluSx|SINE|Alu	-15705	NM_201629	9414		NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|FHCA1|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
118921	chr19	38733571	38733830	+	0	NA	intron (NM_144691, intron 18 of 20)	intron (NM_144691, intron 18 of 20)	10774	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
66041	chr14	58297451	58298900	+	0	NA	promoter-TSS (NR_029435)	promoter-TSS (NR_029435)	-38	NR_029434	379025		NR_029434	ENSG00000257621	PSMA3-AS1	-	PSMA3 antisense RNA 1	ncRNA
119231	chr19	39468601	39469680	+	0	NA	TTS (NR_145805)	TTS (NR_145805)	918	NR_145805	109623469		NR_145805		SNORD175	-	small nucleolar RNA, C/D box 175	snoRNA
232095	chr9	133668401	133669100	+	0	NA	intron (NM_001134707, intron 19 of 20)	(TCCCTC)n|Simple_repeat|Simple_repeat	-11342	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
188200	chr5	150671671	150672780	+	0	NA	intron (NM_133371, intron 5 of 6)	CpG-22681	10974	NM_001122853	91977		NM_133371	ENSG00000164591	MYOZ3	CS-3|CS3|FATZ-3|FRP3	myozenin 3	protein-coding
16188	chr1	153802601	153802950	+	0	NA	Intergenic	Intergenic	8828	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
152234	chr22	20158921	20159530	+	0	NA	Intergenic	Intergenic	-8170	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
126936	chr2	33373001	33373200	+	0	NA	intron (NM_001166265, intron 27 of 29)	intron (NM_001166265, intron 27 of 29)	-45416	NR_039628	100616136		NR_039628	ENSG00000283591	MIR4430	-	microRNA 4430	ncRNA
161988	chr3	46359601	46360310	+	0	NA	3' UTR (NM_001123041, exon 3 of 3)	3' UTR (NM_001123041, exon 3 of 3)	5844	NM_001123396	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
102430	chr17	75671201	75671600	+	0	NA	intron (NM_001301839, intron 2 of 9)	intron (NM_001301839, intron 2 of 9)	4062	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
79373	chr16	644301	644830	+	0	NA	intron (NR_138611, intron 1 of 3)	AluJb|SINE|Alu	1511	NR_138611	84331		NM_032371	ENSG00000172366	MCRIP2	C16orf14|FAM195A|c349E10.1	MAPK regulated corepressor interacting protein 2	protein-coding
33161	chr10	112559501	112559700	+	0	NA	intron (NM_001365710, intron 5 of 7)	intron (NM_001365710, intron 5 of 7)	-74570	NR_036177	100422909		NR_036177	ENSG00000264763	MIR4295	-	microRNA 4295	ncRNA
75759	chr15	68401921	68402600	+	0	NA	intron (NM_001004439, intron 2 of 29)	L1MB8|LINE|L1	29903	NM_001004439	22801		NM_012211	ENSG00000137809	ITGA11	HsT18964	integrin subunit alpha 11	protein-coding
22453	chr1	221263951	221264050	+	0	NA	Intergenic	Intergenic	72296	NR_024236	400804		NR_024236	ENSG00000234754	LINC02817	C1orf140	long intergenic non-protein coding RNA 2817	ncRNA
71751	chr15	20775071	20776030	+	0	NA	Intergenic	CpG	-19399	NR_027992	606		NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
182064	chr5	55945501	55945930	+	0	NA	intron (NR_157112, intron 16 of 17)	AluSc8|SINE|Alu	49248	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
39215	chr11	57564651	57564950	+	0	NA	intron (NM_198183, intron 1 of 3)	AluSq2|SINE|Alu	2872	NM_004223	9246		NM_004223	ENSG00000156587	UBE2L6	RIG-B|UBCH8	ubiquitin conjugating enzyme E2 L6	protein-coding
238168	chrX	136861901	136862300	+	0	NA	Intergenic	MIR|SINE|MIR	17171	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
197245	chr6	69814821	69815450	+	0	NA	Intergenic	LTR59|LTR|ERV1	-18125	NM_018368	55788		NM_018368	ENSG00000168216	LMBRD1	C6orf209|LMBD1|MAHCF|NESI	LMBR1 domain containing 1	protein-coding
53136	chr12	57844201	57844790	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	2234	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
100891	chr17	64391101	64391600	+	0	NA	promoter-TSS (NM_000442)	promoter-TSS (NM_000442)	-490	NM_000442	5175		NM_000442	ENSG00000261371	PECAM1	CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM	platelet and endothelial cell adhesion molecule 1	protein-coding
60965	chr13	46595071	46595430	+	0	NA	intron (NM_015116, intron 1 of 18)	intron (NM_015116, intron 1 of 18)	42080	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
79425	chr16	697651	698150	+	0	NA	intron (NM_153350, intron 1 of 5)	AluY|SINE|Alu	-7502	NM_032259	84219		NM_032259	ENSG00000127580	WDR24	C16orf21|JFP7	WD repeat domain 24	protein-coding
163596	chr3	51980671	51980830	+	0	NA	intron (NM_015407, intron 4 of 4)	intron (NM_015407, intron 4 of 4)	-2785	NM_001198897	95		NM_000666	ENSG00000243989	ACY1	ACY-1|ACY1D|HEL-S-5	aminoacylase 1	protein-coding
15057	chr1	148431251	148431730	+	0	NA	intron (NR_168370, intron 7 of 7)	MIR3|SINE|MIR	16676	NR_168365	100132057		NR_033189	ENSG00000291232	PDE4DIPP6	-	PDE4DIP pseudogene 6	pseudo
8385	chr1	40381101	40382000	+	0	NA	intron (NM_001198978, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	6917	NM_001198978	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
8233	chr1	39694801	39695580	+	0	NA	Intergenic	LTR89|LTR|ERVL?	-3705	NM_001282397	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
33868	chr10	124411471	124411950	+	0	NA	intron (NM_001171814, intron 1 of 8)	AluSx4|SINE|Alu	7213	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
117920	chr19	33036951	33037650	+	0	NA	intron (NM_033103, intron 2 of 14)	LTR12C|LTR|ERV1	27588	NM_033103	85415		NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	rhophilin Rho GTPase binding protein 2	protein-coding
216785	chr8	22515221	22515480	+	0	NA	intron (NM_005605, intron 6 of 13)	L1MA3|LINE|L1	-36577	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
235830	chrX	49291821	49292380	+	0	NA	Intergenic	Intergenic	-11546	NM_001098413	102724473		NM_001098413	ENSG00000215274	GAGE10	GAGE-10	G antigen 10	protein-coding
34618	chr10	133281721	133282480	+	0	NA	intron (NM_001256618, intron 15 of 16)	intron (NM_001256618, intron 15 of 16)	-5232	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
168918	chr3	152344101	152344830	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-3475	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
6993	chr1	31828451	31828900	+	0	NA	Intergenic	Intergenic	-12624	NM_001281988	90853		NM_144569	ENSG00000134668	SPOCD1	PPP1R146	SPOC domain containing 1	protein-coding
164058	chr3	53844371	53844530	+	0	NA	intron (NM_018397, intron 1 of 8)	intron (NM_018397, intron 1 of 8)	1969	NM_018397	55349		NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
148364	chr20	63860501	63861100	+	0	NA	promoter-TSS (NM_080622)	promoter-TSS (NM_080622)	-698	NM_080622	140701		NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
234391	chrX	16593421	16593780	+	0	NA	intron (NM_175859, intron 17 of 18)	intron (NM_175859, intron 17 of 18)	33485	NR_039762	100616428		NR_039762	ENSG00000265144	MIR548AM	-	microRNA 548am	ncRNA
191274	chr6	6212151	6212330	+	0	NA	intron (NM_000129, intron 8 of 14)	L1PA3|LINE|L1	-42805	NR_107007	102466866		NR_107007	ENSG00000263572	MIR7853	hsa-mir-7853	microRNA 7853	ncRNA
16881	chr1	155847801	155848500	+	0	NA	intron (NM_001282861, intron 2 of 20)	MER66D|LTR|ERV1	9064	NM_001282860	54856		NM_025174	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding
165202	chr3	72756671	72757680	+	0	NA	intron (NM_018130, intron 10 of 10)	intron (NM_018130, intron 10 of 10)	91270	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
60990	chr13	46752971	46753130	+	0	NA	TTS (NM_001164213)	TTS (NM_001164213)	44111	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
68242	chr14	76975121	76975380	+	0	NA	Intergenic	Intergenic	15612	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
94347	chr17	28893071	28895030	+	0	NA	intron (NM_004475, intron 1 of 10)	LTR2B|LTR|ERV1	3683	NM_004475	2319		NM_004475	ENSG00000132589	FLOT2	ECS-1|ECS1|ESA|ESA1|M17S1	flotillin 2	protein-coding
179062	chr4	165540201	165540750	+	0	NA	Intergenic	MIR|SINE|MIR	-144164	NR_121676	101928151		NR_121676	ENSG00000249500	LINC01179	-	long intergenic non-protein coding RNA 1179	ncRNA
185979	chr5	133259251	133259550	+	0	NA	intron (NM_015082, intron 6 of 15)	L2b|LINE|L2	168306	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
152380	chr22	20519451	20519550	+	0	NA	intron (NM_001293237, intron 1 of 16)	AluSx|SINE|Alu	11453	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
190129	chr5	178008601	178008800	+	0	NA	promoter-TSS (NR_159407)	promoter-TSS (NR_159407)	-497	NR_159407	653316		NM_001079527	ENSG00000204677	FAM153CP	FAM153C|NY-REN-7-like	protein FAM153C	pseudo
84630	chr16	30708271	30708800	+	0	NA	intron (NM_006662, intron 6 of 33)	AluSx|SINE|Alu	-2002	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
47273	chr12	1590101	1590300	+	0	NA	intron (NM_152441, intron 1 of 1)	intron (NM_152441, intron 1 of 1)	4381	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
46476	chr11	128308751	128308850	+	0	NA	Intergenic	Intergenic	100034	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
88194	chr16	81753701	81754250	+	0	NA	Intergenic	Intergenic	-25316	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
157408	chr22	44975521	44975800	+	0	NA	intron (NM_001284296, intron 2 of 13)	intron (NM_001284296, intron 2 of 13)	27959	NR_147506	101927551		NR_147506	ENSG00000230922	LOC101927551	-	uncharacterized LOC101927551	ncRNA
64065	chr14	22555161	22557650	+	0	NA	TTS (NR_146543)	TTS (NR_146543)	657	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
115305	chr19	14686201	14686700	+	0	NA	Intergenic	(TGA)n|Simple_repeat|Simple_repeat	-3598	NM_001352244	84449		NM_032433	ENSG00000160961	ZNF333	-	zinc finger protein 333	protein-coding
213675	chr7	140058221	140058680	+	0	NA	intron (NR_130117, intron 1 of 10)	AluY|SINE|Alu	4501	NM_022750	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
196351	chr6	43221051	43222080	+	0	NA	intron (NM_015089, intron 34 of 40)	intron (NM_015089, intron 34 of 40)	7916	NM_199184	10591		NM_006443	ENSG00000112667	DNPH1	C6orf108|RCL|dJ330M21.3	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
49458	chr12	25054751	25055350	+	0	NA	intron (NM_001204126, intron 1 of 19)	intron (NM_001204126, intron 1 of 19)	2344	NM_006152	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
149891	chr21	36069501	36070780	+	0	NA	exon (NM_001286789, exon 1 of 3)	exon (NM_001286789, exon 1 of 3)	116	NM_001286789	873		NM_001757	ENSG00000159228	CBR1	CBR|PG-9-KR|SDR21C1|hCBR1	carbonyl reductase 1	protein-coding
176528	chr4	97633701	97633900	+	0	NA	intron (NM_174952, intron 10 of 10)	L1PA3|LINE|L1	266874	NR_102713	101410545		NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
188081	chr5	150159671	150160430	+	0	NA	Intergenic	Intergenic	-4205	NM_001355017	5159		NM_002609	ENSG00000113721	PDGFRB	CD140B|IBGC4|IMF1|JTK12|KOGS|PDGFR|PDGFR-1|PDGFR1|PENTT	platelet derived growth factor receptor beta	protein-coding
175353	chr4	69759401	69759600	+	0	NA	intron (NM_014465, intron 1 of 7)	intron (NM_014465, intron 1 of 7)	1120	NM_014465	27284		NM_014465	ENSG00000173597	SULT1B1	ST1B1|ST1B2|SULT1B2	sulfotransferase family 1B member 1	protein-coding
48162	chr12	7935501	7937150	+	0	NA	promoter-TSS (NM_006931)	promoter-TSS (NM_006931)	-138	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
21907	chr1	207822371	207823180	+	0	NA	promoter-TSS (NR_135298)	promoter-TSS (NR_135298)	-72	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
30250	chr10	75110371	75110530	+	0	NA	Intergenic	Intergenic	-1206	NM_001174156	142891		NM_144660	ENSG00000156671	SAMD8	HEL-177|SMSr	sterile alpha motif domain containing 8	protein-coding
119810	chr19	41341671	41341830	+	0	NA	intron (NM_000660, intron 5 of 6)	intron (NM_000660, intron 5 of 6)	12172	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
159890	chr3	16890651	16891380	+	0	NA	intron (NM_001144382, intron 1 of 5)	Charlie13b|DNA|hAT-Charlie	6060	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
47086	chr12	629171	629600	+	0	NA	intron (NM_016533, intron 1 of 3)	MIR|SINE|MIR	-1506	NR_122124	100049716		NR_122124	ENSG00000177406	NINJ2-AS1	-	NINJ2 antisense RNA 1	ncRNA
16723	chr1	155247701	155248600	+	0	NA	exon (NM_001267608, exon 10 of 11)	exon (NM_001267608, exon 10 of 11)	-3523	NM_001005742	2629		NM_000157	ENSG00000177628	GBA1	GBA|GCB|GLUC	glucosylceramidase beta 1	protein-coding
181011	chr5	35851421	35851730	+	0	NA	Intergenic	Intergenic	-5316	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
64090	chr14	22597771	22599350	+	0	NA	intron (NM_022060, intron 1 of 6)	CpG	322	NM_022060	63874		NM_022060	ENSG00000100439	ABHD4	ABH4	abhydrolase domain containing 4, N-acyl phospholipase B	protein-coding
42070	chr11	67490021	67490380	+	0	NA	promoter-TSS (NR_106810)	promoter-TSS (NR_106810)	-45	NR_106810	102465450		NR_106810	ENSG00000276769	MIR6752	hsa-mir-6752	microRNA 6752	ncRNA
66229	chr14	61331351	61331600	+	0	NA	intron (NM_006255, intron 1 of 13)	AluJo|SINE|Alu	10032	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
1912	chr1	6464371	6464780	+	0	NA	exon (NM_001039664, exon 4 of 5)	exon (NM_001039664, exon 4 of 5)	1598	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
142381	chr20	3806321	3806580	+	0	NA	TTS (NM_021873)	TTS (NM_021873)	-2044	NR_109859	101929125		NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA
209036	chr7	74617421	74617880	+	0	NA	Intergenic	Intergenic	21682	NR_162116	113218504		NR_162116		MIR10525	-	microRNA 10525	ncRNA
143228	chr20	24979871	24980250	+	0	NA	intron (NM_020531, intron 2 of 8)	L2a|LINE|L2	12691	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
147706	chr20	62354871	62355030	+	0	NA	intron (NR_109922, intron 1 of 2)	intron (NR_109922, intron 1 of 2)	1940	NR_109922	101928158		NR_109922	ENSG00000228812	LAMA5-AS1	-	LAMA5 antisense RNA 1	ncRNA
35988	chr11	2880601	2881030	+	0	NA	Intergenic	Intergenic	4950	NM_000076	1028		NM_000076	ENSG00000129757	CDKN1C	BWCR|BWS|KIP2|WBS|p57|p57Kip2	cyclin dependent kinase inhibitor 1C	protein-coding
186893	chr5	139568171	139568850	+	0	NA	intron (NM_181838, intron 2 of 7)	AluY|SINE|Alu	7171	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
192125	chr6	16748551	16748850	+	0	NA	intron (NR_152112, intron 1 of 1)	intron (NR_152112, intron 1 of 1)	11484	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
120040	chr19	41983771	41983930	+	0	NA	intron (NM_001256213, intron 8 of 22)	AluSq2|SINE|Alu	9617	NM_001256213	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
61807	chr13	75549151	75550250	+	0	NA	promoter-TSS (NM_006002)	promoter-TSS (NM_006002)	-91	NM_006002	7347		NM_006002	ENSG00000118939	UCHL3	UCH-L3	ubiquitin C-terminal hydrolase L3	protein-coding
81385	chr16	5090151	5090450	+	0	NA	exon (NM_001289029, exon 4 of 6)	exon (NM_001289029, exon 4 of 6)	7495	NM_201400	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
114409	chr19	12647421	12648430	+	0	NA	intron (NM_001173498, intron 21 of 23)	CpG	18817	NM_000528	4125		NM_000528	ENSG00000104774	MAN2B1	LAMAN|MANB	mannosidase alpha class 2B member 1	protein-coding
161549	chr3	42658501	42659250	+	0	NA	exon (NM_145166, exon 2 of 6)	exon (NM_145166, exon 2 of 6)	-4487	NR_125400	101928323		NR_125400		ZBTB47-AS1	-	ZBTB47 and NKTR antisense RNA 1	ncRNA
105515	chr17	83109801	83110000	+	0	NA	Intergenic	Intergenic	28754	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
122873	chr19	50501201	50501680	+	0	NA	Intergenic	Intergenic	9751	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
27763	chr10	35335871	35337830	+	0	NA	promoter-TSS (NM_001282853)	promoter-TSS (NM_001282853)	-24	NM_001282852	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
19708	chr1	181089401	181091630	+	0	NA	3' UTR (NM_016545, exon 1 of 1)	3' UTR (NM_016545, exon 1 of 1)	1815	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
190994	chr6	3053371	3054230	+	0	NA	Intergenic	(CGCCA)n|Simple_repeat|Simple_repeat	-10167	NM_001317061	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
50449	chr12	47718651	47718750	+	0	NA	intron (NM_006025, intron 1 of 8)	intron (NM_006025, intron 1 of 8)	6790	NM_006025	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
201790	chr6	149982571	149983450	+	0	NA	Intergenic	Intergenic	19067	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
86557	chr16	67197321	67197700	+	0	NA	intron (NM_001950, intron 7 of 9)	intron (NM_001950, intron 7 of 9)	-1621	NM_024712	79767		NM_024712	ENSG00000102890	ELMO3	CED-12|CED12|ELMO-3	engulfment and cell motility 3	protein-coding
184637	chr5	107428451	107428950	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	242237	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
91332	chr17	4420521	4421200	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-13080	NM_001320449	201305		NM_182538	ENSG00000182557	SPNS3	SLC62A3|SLC63A3	SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)	protein-coding
72912	chr15	40357721	40359300	+	0	NA	intron (NM_033510, intron 1 of 7)	CpG	291	NM_033510	85455		NM_033510	ENSG00000140323	DISP2	C15orf36|DISPB|HsT16908|LINC00594	dispatched RND transporter family member 2	protein-coding
13175	chr1	112394401	112394880	+	0	NA	Intergenic	Intergenic	-1574	NM_018704	55917		NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
201461	chr6	148739101	148739400	+	0	NA	Intergenic	MIRc|SINE|MIR	-7780	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
35239	chr11	840671	840830	+	0	NA	intron (NM_021128, intron 1 of 1)	(ATGAA)n|Simple_repeat|Simple_repeat	1779	NM_021128	5441		NM_021128	ENSG00000177700	POLR2L	RBP10|RPABC5|RPB10|RPB10beta|RPB7.6|hRPB7.6	RNA polymerase II, I and III subunit L	protein-coding
31231	chr10	91804171	91804880	+	0	NA	intron (NM_025235, intron 1 of 26)	intron (NM_025235, intron 1 of 26)	6099	NM_025235	80351		NM_025235	ENSG00000107854	TNKS2	ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6	tankyrase 2	protein-coding
51266	chr12	51082051	51082800	+	0	NA	intron (NM_030809, intron 1 of 4)	intron (NM_030809, intron 1 of 4)	1171	NR_045072	81566		NM_030809	ENSG00000110925	CSRNP2	C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12	cysteine and serine rich nuclear protein 2	protein-coding
138946	chr2	218251001	218251200	+	0	NA	intron (NM_152862, intron 10 of 10)	intron (NM_152862, intron 10 of 10)	-8396	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
219834	chr8	81768501	81768750	+	0	NA	Intergenic	L1PA2|LINE|L1	36177	NM_152284	92421		NM_152284	ENSG00000164695	CHMP4C	SNF7-3|Shax3|VPS32C	charged multivesicular body protein 4C	protein-coding
98028	chr17	45407851	45408650	+	0	NA	intron (NR_169601, intron 4 of 20)	L2a|LINE|L2	2136	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
175059	chr4	53930001	53930230	+	0	NA	Intergenic	Intergenic	57167	NR_027153	402176		NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo
196678	chr6	44642821	44643100	+	0	NA	Intergenic	Intergenic	-91079	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
52898	chr12	57214271	57214780	+	0	NA	Intergenic	Intergenic	-2269	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
19342	chr1	173834771	173834930	+	0	NA	intron (NM_018122, intron 7 of 16)	AluSz|SINE|Alu	10177	NM_001365213	55157		NM_018122	ENSG00000117593	DARS2	ASPRS|LBSL|MT-ASPRS|mtAspRS	aspartyl-tRNA synthetase 2, mitochondrial	protein-coding
238196	chrX	137000351	137000650	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	33495	NM_054021	83550		NM_054021	ENSG00000165370	GPR101	GPCR6|PAGH2|PITA2	G protein-coupled receptor 101	protein-coding
76193	chr15	73517671	73518030	+	0	NA	intron (NM_001348772, intron 2 of 4)	L2|LINE|L2	51693	NR_103844	101241892		NR_103844	ENSG00000281183	NPTN-IT1	lncRNA-LET	NPTN intronic transcript 1	ncRNA
7347	chr1	32758751	32759300	+	0	NA	intron (NM_001369553, intron 1 of 6)	intron (NM_001369553, intron 1 of 6)	5026	NM_001369553	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
70730	chr14	103353351	103354000	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	15826	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
193788	chr6	31400301	31401380	+	0	NA	promoter-TSS (NR_148222)	promoter-TSS (NR_148222)	129	NM_001289152	100507436		NM_000247	ENSG00000204520	MICA	MIC-A|PERB11.1	MHC class I polypeptide-related sequence A	protein-coding
2983	chr1	12008421	12008750	+	0	NA	intron (NM_014874, intron 17 of 18)	SVA_C|Retroposon|SVA	-10913	NM_021933	60672		NM_021933	ENSG00000116691	MIIP	IIP45	migration and invasion inhibitory protein	protein-coding
173372	chr4	7876251	7877100	+	0	NA	intron (NM_198595, intron 1 of 16)	MLT1O|LTR|ERVL-MaLR	-4367	NM_001371090	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
138690	chr2	213086571	213086730	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	63787	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
146190	chr20	48763821	48764800	+	0	NA	intron (NM_020820, intron 1 of 39)	MLT1D|LTR|ERVL-MaLR	63689	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
208808	chr7	73626601	73627350	+	0	NA	Intergenic	Intergenic	-2453	NM_032952	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
54312	chr12	89494401	89495000	+	0	NA	intron (NR_037659, intron 2 of 11)	MLT1H|LTR|ERVL-MaLR	30096	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
20890	chr1	202148651	202149150	+	0	NA	intron (NR_037663, intron 9 of 9)	AluSx1|SINE|Alu	-4157	NM_001256129	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
163568	chr3	51935521	51935780	+	0	NA	exon (NM_004704, exon 9 of 15)	exon (NM_004704, exon 9 of 15)	6254	NM_004704	9136		NM_004704	ENSG00000114767	RRP9	RNU3IP2|U3-55K	ribosomal RNA processing 9, U3 small nucleolar RNA binding protein	protein-coding
7979	chr1	37896251	37896350	+	0	NA	intron (NR_158630, intron 7 of 24)	SVA_D|Retroposon|SVA	35439	NM_001297434	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
97499	chr17	43903951	43904050	+	0	NA	intron (NM_001278371, intron 1 of 11)	intron (NM_001278371, intron 1 of 11)	-2438	NM_001278375	4355		NM_005374	ENSG00000108852	MPP2	DLG2	MAGUK p55 scaffold protein 2	protein-coding
166712	chr3	120795021	120795350	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	41172	NR_135571	101926983		NR_135570	ENSG00000243593	LINC02049	-	long intergenic non-protein coding RNA 2049	ncRNA
202414	chr6	157889351	157889650	+	0	NA	intron (NM_016224, intron 4 of 17)	intron (NM_016224, intron 4 of 17)	66254	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
205883	chr7	25107751	25108050	+	0	NA	Intergenic	AluJb|SINE|Alu	17360	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
212290	chr7	123762571	123762730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-13647	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
203123	chr6	166729821	166730080	+	0	NA	intron (NM_001006932, intron 2 of 21)	MER101-int|LTR|ERV1	-102699	NM_021135	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
78779	chr15	99409001	99409400	+	0	NA	Intergenic	Intergenic	151675	NR_073383	7190		NR_073383	ENSG00000259706	HSP90B2P	GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1	heat shock protein 90 beta family member 2, pseudogene	pseudo
21336	chr1	204552001	204552450	+	0	NA	3' UTR (NM_001278518, exon 7 of 7)	3' UTR (NM_001278518, exon 7 of 7)	35819	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
54588	chr12	92457651	92457750	+	0	NA	Intergenic	Intergenic	-8979	NR_144532	100507616		NR_144532		LINC02397	-	long intergenic non-protein coding RNA 2397	ncRNA
214138	chr7	144335801	144336000	+	0	NA	intron (NR_126023, intron 2 of 4).2	THE1A-int|LTR|ERVL-MaLR	17775	NM_001001802	402317		NM_001001802	ENSG00000212807	OR2A42	-	olfactory receptor family 2 subfamily A member 42	protein-coding
52191	chr12	54352971	54353300	+	0	NA	promoter-TSS (NR_120486)	promoter-TSS (NR_120486)	-556	NR_120487	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
116111	chr19	17304851	17306680	+	0	NA	promoter-TSS (NM_023937)	promoter-TSS (NM_023937)	-107	NM_023937	64981		NM_023937	ENSG00000130312	MRPL34	L34mt|bL34m	mitochondrial ribosomal protein L34	protein-coding
156191	chr22	40269401	40269600	+	0	NA	intron (NM_015088, intron 5 of 20)	L1ME4b|LINE|L1	-77000	NM_000026	158		NM_000026	ENSG00000239900	ADSL	AMPS|ASASE|ASL	adenylosuccinate lyase	protein-coding
18077	chr1	160662921	160663580	+	0	NA	Intergenic	LTR16|LTR|ERVL	-15939	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
20865	chr1	202010901	202011100	+	0	NA	promoter-TSS (NR_146472)	promoter-TSS (NR_146472)	413	NM_001114309	1999		NM_004433	ENSG00000163435	ELF3	EPR-1|ERT|ESE-1|ESX	E74 like ETS transcription factor 3	protein-coding
135814	chr2	170298251	170298350	+	0	NA	intron (NR_045682, intron 7 of 35)	intron (NR_045682, intron 7 of 35)	52643	NR_110576	101929753		NR_110576	ENSG00000231898	MYO3B-AS1	-	MYO3B antisense RNA 1	ncRNA
132483	chr2	105934121	105934800	+	0	NA	Intergenic	LTR9|LTR|ERV1	82613	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
141067	chr2	238263351	238264430	+	0	NA	intron (NM_022817, intron 9 of 22)	intron (NM_022817, intron 9 of 22)	-23852	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
150507	chr21	42848551	42849250	+	0	NA	TTS (NM_001260477)	TTS (NM_001260477)	30375	NM_001260477	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
42463	chr11	69640421	69641450	+	0	NA	promoter-TSS (NM_053056)	promoter-TSS (NM_053056)	-221	NM_053056	595		NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding
232395	chr9	135988121	135988580	+	0	NA	Intergenic	Intergenic	-26977	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
228744	chr9	110005501	110005880	+	0	NA	intron (NM_147150, intron 6 of 9)	L1PA4|LINE|L1	-42908	NM_001004065	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
604	chr1	1301951	1302550	+	0	NA	intron (NM_030649, intron 4 of 23)	intron (NM_030649, intron 4 of 23)	2562	NR_145806	109623456		NR_145806		SNORD167	-	small nucleolar RNA, C/D box 167	snoRNA
166441	chr3	113912651	113913260	+	0	NA	intron (NM_017577, intron 9 of 17)	intron (NM_017577, intron 9 of 17)	15455	NM_001172105	54762		NM_017577	ENSG00000178075	GRAMD1C	-	GRAM domain containing 1C	protein-coding
226028	chr9	42437151	42437850	+	0	NA	Intergenic	L1P3|LINE|L1	131849	NR_126050	103908605		NR_126050		FAM88E	-	family with sequence similarity 88 member E	ncRNA
65742	chr14	53154551	53154930	+	0	NA	intron (NR_110062, intron 1 of 2)	intron (NR_110062, intron 1 of 2)	1386	NR_110062	101927620		NR_110062	ENSG00000258731	DDHD1-DT	-	DDHD1 divergent transcript	ncRNA
229562	chr9	123035051	123035430	+	0	NA	exon (NM_005294, exon 2 of 2)	exon (NM_005294, exon 2 of 2)	1573	NM_005294	2844		NM_005294	ENSG00000188394	GPR21	-	G protein-coupled receptor 21	protein-coding
106186	chr18	10530971	10531130	+	0	NA	intron (NM_003826, intron 2 of 11)	intron (NM_003826, intron 2 of 11)	5023	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
129251	chr2	68371451	68372150	+	0	NA	intron (NM_002664, intron 1 of 8)	L3|LINE|CR1	6518	NM_002664	5341		NM_002664	ENSG00000115956	PLEK	P47|PLEK1	pleckstrin	protein-coding
67650	chr14	73073001	73073430	+	0	NA	intron (NM_021239, intron 2 of 18)	AluJb|SINE|Alu	14681	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
119204	chr19	39442471	39443050	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2786	NM_001130825	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
230093	chr9	127561001	127561200	+	0	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	7973	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
177258	chr4	109406321	109406650	+	0	NA	Intergenic	Intergenic	-27230	NM_001042734	10427		NM_006323	ENSG00000138802	SEC24B	SEC24	SEC24 homolog B, COPII coat complex component	protein-coding
206680	chr7	36396221	36396550	+	0	NA	exon (NM_001284302, exon 2 of 23)	exon (NM_001284302, exon 2 of 23)	-6028	NM_001100425	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
98156	chr17	46035021	46035550	+	0	NA	intron (NM_015443, intron 10 of 14).2	intron (NM_015443, intron 10 of 14).2	36035	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
72657	chr15	38523601	38524100	+	0	NA	intron (NM_001128602, intron 3 of 15)	Tigger3b|DNA|TcMar-Tigger	40964	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
215533	chr7	158775451	158776200	+	0	NA	intron (NM_020728, intron 6 of 21)	Tigger1|DNA|TcMar-Tigger	53684	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
117452	chr19	19683721	19684430	+	0	NA	TTS (NM_033204)	TTS (NM_033204)	15236	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
140928	chr2	237723471	237724230	+	0	NA	intron (NM_001137550, intron 7 of 23)	L2b|LINE|L2	31645	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
14082	chr1	120854121	120854680	+	0	NA	Intergenic	Intergenic	-3415	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
187234	chr5	141334371	141334550	+	0	NA	intron (NM_018912, intron 1 of 3)	AluJb|SINE|Alu	3775	NM_031993	56114		NM_018912	ENSG00000204956	PCDHGA1	PCDH-GAMMA-A1	protocadherin gamma subfamily A, 1	protein-coding
107818	chr18	53861351	53861460	+	0	NA	Intergenic	(AGGG)n|Simple_repeat|Simple_repeat	-280346	NR_110800	101928167		NR_110800	ENSG00000260433	LINC01917	-	long intergenic non-protein coding RNA 1917	ncRNA
171392	chr3	196183221	196184130	+	0	NA	Intergenic	Intergenic	27725	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
185946	chr5	132959671	132960080	+	0	NA	intron (NM_014423, intron 1 of 20)	AluY|SINE|Alu	3759	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
157064	chr22	42592151	42592250	+	0	NA	intron (NM_001278657, intron 6 of 8)	intron (NM_001278657, intron 6 of 8)	-10189	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
136567	chr2	177631751	177631850	+	0	NA	intron (NM_001077358, intron 18 of 18)	intron (NM_001077358, intron 18 of 18)	-13058	NM_152275	92104		NM_152275	ENSG00000197557	IFT70A	CFAP259|FAP259|TTC30A|TTC30B	intraflagellar transport 70A	protein-coding
10791	chr1	77671901	77672800	+	0	NA	intron (NR_164775, intron 1 of 14)	MER5A|DNA|hAT-Charlie	10308	NM_001376155	26009		NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding
78259	chr15	90829851	90830650	+	0	NA	Intergenic	Intergenic	-38338	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
64320	chr14	23588871	23589650	+	0	NA	Intergenic	Intergenic	-10470	NM_032452	84502		NM_032452	ENSG00000092051	JPH4	JP4|JPHL1	junctophilin 4	protein-coding
206569	chr7	35674401	35674600	+	0	NA	intron (NM_022373, intron 2 of 8)	MER21B|LTR|ERVL	20635	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
229475	chr9	122099221	122099780	+	0	NA	Intergenic	Intergenic	-6192	NM_194252	158135		NM_194252	ENSG00000175764	TTLL11	C9orf148|C9orf20|TTLL11-IT1|bA244O19.1	tubulin tyrosine ligase like 11	protein-coding
198326	chr6	101727571	101727730	+	0	NA	intron (NM_021956, intron 7 of 16)	intron (NM_021956, intron 7 of 16)	328665	NM_001166247	2898		NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6|NEDLAS	glutamate ionotropic receptor kainate type subunit 2	protein-coding
185690	chr5	131854201	131854750	+	0	NA	intron (NM_001303622, intron 10 of 12)	L1MB3|LINE|L1	-57458	NM_001346114	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
209584	chr7	77531051	77531550	+	0	NA	Intergenic	Intergenic	-5995	NM_002835	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
29100	chr10	68314171	68314730	+	0	NA	intron (NM_001033083, intron 1 of 8)	L1M4|LINE|L1	-17243	NM_001322438	3189		NM_012207	ENSG00000096746	HNRNPH3	2H9|HNRPH3	heterogeneous nuclear ribonucleoprotein H3	protein-coding
16206	chr1	153870971	153871300	+	0	NA	intron (NM_020699, intron 1 of 10)	AluSg|SINE|Alu	51837	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
228643	chr9	106921321	106921600	+	0	NA	intron (NM_001347997, intron 1 of 12)	intron (NM_001347997, intron 1 of 12)	58294	NM_001347997	58499		NM_021224	ENSG00000148143	ZNF462	WSKA|ZFPIP|Zfp462	zinc finger protein 462	protein-coding
144385	chr20	35166401	35166680	+	0	NA	intron (NM_001355008, intron 4 of 14)	intron (NM_001355008, intron 4 of 14)	-5532	NM_006404	10544		NM_006404	ENSG00000101000	PROCR	CCCA|CCD41|EPCR	protein C receptor	protein-coding
142506	chr20	4809471	4810180	+	0	NA	intron (NM_014737, intron 2 of 11)	LTR16A1|LTR|ERVL	5298	NM_170774	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
29468	chr10	70554501	70555250	+	0	NA	intron (NM_014431, intron 18 of 19)	intron (NM_014431, intron 18 of 19)	47866	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
181884	chr5	54523051	54523150	+	0	NA	intron (NM_001145427, intron 1 of 1)	intron (NM_001145427, intron 1 of 1)	5341	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
17403	chr1	156629101	156629480	+	0	NA	Intergenic	AluY|SINE|Alu	-7362	NR_135113	101928177		NR_135113		LOC101928177	-	uncharacterized LOC101928177	ncRNA
65308	chr14	50088271	50088430	+	0	NA	intron (NR_131171, intron 2 of 8)	MIRc|SINE|MIR	16693	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
136710	chr2	181162121	181162450	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	38448	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
110401	chr19	1948721	1949600	+	0	NA	intron (NM_001319, intron 1 of 11)	L1MB5|LINE|L1	5389	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
139513	chr2	224560671	224561230	+	0	NA	intron (NM_003590, intron 1 of 15)	L2a|LINE|L2	9005	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
120454	chr19	44607021	44607280	+	0	NA	Intergenic	Intergenic	-6413	NM_001205280	147710		NM_001205280	ENSG00000216588	IGSF23	-	immunoglobulin superfamily member 23	protein-coding
6262	chr1	27573151	27573450	+	0	NA	intron (NM_001029882, intron 1 of 6)	MIR3|SINE|MIR	30194	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
53909	chr12	71640451	71640550	+	0	NA	intron (NM_144982, intron 6 of 34)	intron (NM_144982, intron 6 of 34)	23348	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
203770	chr7	1224551	1224930	+	0	NA	Intergenic	Intergenic	-8132	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
28152	chr10	43458501	43458700	+	0	NA	intron (NM_001355444, intron 1 of 3)	(A)n|Simple_repeat|Simple_repeat	21489	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
218466	chr8	48925301	48925940	+	0	NA	Intergenic	Intergenic	-4191	NM_003068	6591		NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding
10982	chr1	84437071	84437630	+	0	NA	Intergenic	Intergenic	29080	NM_058248	58511		NM_021233	ENSG00000137976	DNASE2B	DLAD	deoxyribonuclease 2 beta	protein-coding
39333	chr11	59174721	59175550	+	0	NA	intron (NM_015177, intron 1 of 8)	intron (NM_015177, intron 1 of 8)	3003	NM_015177	23220		NM_015177	ENSG00000110042	DTX4	RNF155	deltex E3 ubiquitin ligase 4	protein-coding
188814	chr5	158812351	158812650	+	0	NA	intron (NM_001324107, intron 8 of 15)	intron (NM_001324107, intron 8 of 15)	285456	NM_001364157	1879		NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	EBF transcription factor 1	protein-coding
187380	chr5	141871151	141871730	+	0	NA	intron (NM_032420, intron 1 of 4)	MIRb|SINE|MIR	-1813	NM_001278613	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
109928	chr19	1310651	1310950	+	0	NA	Intergenic	Intergenic	24927	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
168692	chr3	150612921	150613600	+	0	NA	intron (NM_016275, intron 1 of 5)	intron (NM_016275, intron 1 of 5)	9939	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
182408	chr5	61340551	61341600	+	0	NA	intron (NM_020928, intron 1 of 13)	MER6A|DNA|TcMar-Tigger	8817	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
219007	chr8	63187771	63188280	+	0	NA	intron (NM_001277815, intron 5 of 5)	intron (NM_001277815, intron 5 of 5)	19022	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
8557	chr1	41313601	41313900	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-47684	NM_001291281	100132074		NM_001291281	ENSG00000204060	FOXO6	-	forkhead box O6	protein-coding
57927	chr12	123581751	123582630	+	0	NA	non-coding (NR_110049, exon 3 of 3)	non-coding (NR_110049, exon 3 of 3)	2137	NR_110049	101927415		NR_110049		TMED2-DT	-	TMED2 divergent transcript	ncRNA
108238	chr18	63209651	63209950	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	109969	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
25172	chr10	5412201	5413200	+	0	NA	exon (NM_001047160, exon 1 of 12)	exon (NM_001047160, exon 1 of 12)	143	NM_001047160	10276		NM_005863	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
149397	chr21	31160301	31160500	+	0	NA	intron (NM_001353694, intron 16 of 27)	intron (NM_001353694, intron 16 of 27)	540	NM_001353684	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
196857	chr6	47780651	47781030	+	0	NA	Intergenic	Intergenic	-1199	NM_181744	221391		NM_181744	ENSG00000124818	OPN5	GPR136|GRP136|PGR12|TMEM13	opsin 5	protein-coding
135200	chr2	158954051	158954150	+	0	NA	Intergenic	Intergenic	-14534	NM_001350063	85461		NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
174874	chr4	48739251	48740080	+	0	NA	intron (NM_015030, intron 1 of 63)	L1MC1|LINE|L1	40614	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
145489	chr20	43925871	43926330	+	0	NA	intron (NM_001098796, intron 1 of 8)	intron (NM_001098796, intron 1 of 8)	9970	NM_001098796	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
234436	chrX	16866371	16866530	+	0	NA	intron (NM_002893, intron 2 of 11)	AluSg|SINE|Alu	3413	NM_001198719	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
43298	chr11	76203121	76203580	+	0	NA	intron (NM_004626, intron 1 of 4)	intron (NM_004626, intron 1 of 4)	3152	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
70121	chr14	100251071	100251900	+	0	NA	intron (NM_003403, intron 1 of 4)	MLT1D|LTR|ERVL-MaLR	12341	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
8855	chr1	43381021	43381280	+	0	NA	Intergenic	Intergenic	8650	NM_201542	112950		NM_052877	ENSG00000159479	MED8	ARC32	mediator complex subunit 8	protein-coding
238072	chrX	136070351	136071130	+	0	NA	Intergenic	L2c|LINE|L2	-75962	NR_027621	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
49810	chr12	31973171	31973330	+	0	NA	intron (NM_018169, intron 3 of 5)	intron (NM_018169, intron 3 of 5)	13835	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
38739	chr11	46918041	46919050	+	0	NA	promoter-TSS (NM_002334)	promoter-TSS (NM_002334)	5	NM_002334	4038		NM_002334	ENSG00000134569	LRP4	CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2	LDL receptor related protein 4	protein-coding
47753	chr12	6536971	6537180	+	0	NA	intron (NR_152150, intron 5 of 6)	intron (NR_152150, intron 5 of 6)	1811	NM_001256799	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
57674	chr12	122799801	122800000	+	0	NA	intron (NR_027918, intron 8 of 12)	intron (NR_027918, intron 8 of 12)	25328	NM_201435	84660		NM_032573	ENSG00000130783	CCDC62	CT109|ERAP75|SPGF67|TSP-NY	coiled-coil domain containing 62	protein-coding
211695	chr7	106731951	106732250	+	0	NA	Intergenic	LTR52|LTR|ERVL	-70942	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
218498	chr8	52711621	52712130	+	0	NA	intron (NM_001083617, intron 1 of 23)	L2a|LINE|L2	2560	NM_014781	9821		NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
194121	chr6	31963801	31964430	+	0	NA	exon (NM_006929, exon 16 of 28).3	exon (NM_006929, exon 16 of 28).3	4940	NM_006929	6499		NM_006929	ENSG00000204351	SKIC2	170A|DDX13|HLP|SKI2|SKI2W|SKIV2|SKIV2L|SKIV2L1|THES2	SKI2 subunit of superkiller complex	protein-coding
142887	chr20	17938951	17939850	+	0	NA	Intergenic	Intergenic	23546	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
128729	chr2	61874451	61874750	+	0	NA	intron (NM_006430, intron 8 of 13)	AluSg|SINE|Alu	-13791	NM_001371765	150684		NM_152516	ENSG00000173163	COMMD1	C2orf5|MURR1	copper metabolism domain containing 1	protein-coding
38568	chr11	46099171	46099600	+	0	NA	intron (NR_147890, intron 1 of 18)	intron (NR_147890, intron 1 of 18)	21434	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
160774	chr3	32816801	32817500	+	0	NA	promoter-TSS (NM_001039111)	promoter-TSS (NM_001039111)	-847	NM_001039111	131405		NM_001039111	ENSG00000206557	TRIM71	HYC4|HYDCC1|LIN-41|LIN41	tripartite motif containing 71	protein-coding
57715	chr12	122870251	122870650	+	0	NA	intron (NM_024667, intron 2 of 3)	intron (NM_024667, intron 2 of 3)	25674	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
30770	chr10	84333671	84335230	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	5861	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
3343	chr1	15439671	15439830	+	0	NA	intron (NM_007272, intron 1 of 7)	(GTTTT)n|Simple_repeat|Simple_repeat	1307	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
44414	chr11	103924771	103925080	+	0	NA	intron (NM_025208, intron 6 of 6)	L1PA7|LINE|L1	75019	NR_039842	100616457		NR_039842	ENSG00000264200	MIR4693	-	microRNA 4693	ncRNA
77185	chr15	80251821	80252080	+	0	NA	intron (NM_001352888, intron 1 of 2)	CpG	263	NM_001352888	100996492		NM_001352888	ENSG00000259417	CTXND1	LINC01314	cortexin domain containing 1	protein-coding
70828	chr14	103630771	103631450	+	0	NA	intron (NM_001130107, intron 1 of 15)	AluY|SINE|Alu	1922	NM_001130107	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
236734	chrX	78124321	78124780	+	0	NA	intron (NM_000291, intron 8 of 10)	MER20|DNA|hAT-Charlie	15100	NM_015975	51616		NM_015975	ENSG00000187325	TAF9B	DN-7|DN7|TAF9L|TAFII31L|TFIID-31	TATA-box binding protein associated factor 9b	protein-coding
230399	chr9	128110051	128110350	+	0	NA	TTS (NM_001330988)	TTS (NM_001330988)	8534	NR_033374	100289019		NR_033374		SLC25A25-AS1	HRCEG	SLC25A25 antisense RNA 1	ncRNA
171143	chr3	195554251	195554550	+	0	NA	Intergenic	AluSq2|SINE|Alu	-11075	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
100397	chr17	60342421	60342700	+	0	NA	intron (NM_032582, intron 2 of 33)	L1P2|LINE|L1	49573	NM_032582	84669		NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding
26780	chr10	22997021	22997350	+	0	NA	intron (NM_173081, intron 10 of 18)	intron (NM_173081, intron 10 of 18)	69132	NM_001282746	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
39654	chr11	61586351	61586450	+	0	NA	Intergenic	Intergenic	-2094	NR_110189	101927495		NR_110189	ENSG00000250230	LOC101927495	-	uncharacterized LOC101927495	ncRNA
208977	chr7	74204571	74205130	+	0	NA	Intergenic	ERVL47-int|LTR|ERVL	-5156	NM_032464	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
138979	chr2	218283201	218283400	+	0	NA	intron (NM_022152, intron 1 of 11)	MIR3|SINE|MIR	-3112	NR_106768	102465256		NR_106768	ENSG00000284173	MIR6513	hsa-mir-6513|mir-6513	microRNA 6513	ncRNA
94149	chr17	28343501	28344130	+	0	NA	intron (NM_021137, intron 6 of 6)	intron (NM_021137, intron 6 of 6)	8054	NM_021137	7126		NM_021137	ENSG00000109079	TNFAIP1	B12|B61|BTBD34|EDP1|hBACURD2	TNF alpha induced protein 1	protein-coding
99087	chr17	48999271	48999430	+	0	NA	intron (NM_001160423, intron 2 of 12)	intron (NM_001160423, intron 2 of 12)	1965	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
95176	chr17	35173351	35173650	+	0	NA	intron (NM_173167, intron 12 of 18)	MLT1D|LTR|ERVL-MaLR	20893	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
201338	chr6	144499971	144500330	+	0	NA	intron (NM_007124, intron 33 of 73)	L1P4|LINE|L1	-82998	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
50813	chr12	49087841	49088850	+	0	NA	3' UTR (NM_021044, exon 3 of 3)	3' UTR (NM_021044, exon 3 of 3)	6456	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
127171	chr2	38304801	38305000	+	0	NA	intron (NM_001135673, intron 9 of 12)	L1MA3|LINE|L1	71630	NM_001330460	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
71271	chr14	105232351	105232450	+	0	NA	intron (NM_001242789, intron 1 of 12)	intron (NM_001242789, intron 1 of 12)	15485	NM_145685	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
75279	chr15	65066471	65066830	+	0	NA	intron (NM_001379429, intron 1 of 4)	intron (NM_001379429, intron 1 of 4)	1341	NM_001307930	51285		NM_016563	ENSG00000103710	RASL12	RIS	RAS like family 12	protein-coding
135081	chr2	156892621	156892880	+	0	NA	Intergenic	Intergenic	-364955	NM_014568	11227		NM_014568	ENSG00000136542	GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
179178	chr4	173167101	173167330	+	0	NA	intron (NR_134241, intron 2 of 3)	intron (NR_134241, intron 2 of 3)	-1596	NM_001375599	51809		NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
74246	chr15	56917551	56920480	+	0	NA	promoter-TSS (NM_001322165)	promoter-TSS (NM_001322165)	-72	NM_001322162	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
193294	chr6	30073971	30074130	+	0	NA	intron (NM_025236, intron 1 of 3).6	intron (NM_025236, intron 1 of 3).6	1799	NM_170769	80352		NM_025236	ENSG00000204618	RNF39	FAP216|HZF|HZFW|LIRF	ring finger protein 39	protein-coding
1748	chr1	6002101	6002530	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	9639	NM_001199861	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
236633	chrX	74608271	74608830	+	0	NA	intron (NM_016120, intron 1 of 3)	intron (NM_016120, intron 1 of 3)	6074	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
161576	chr3	42880601	42881450	+	0	NA	Intergenic	CpG	-5146	NM_004391	1582		NM_004391	ENSG00000180432	CYP8B1	CP8B|CYP12|CYPVIIIB1	cytochrome P450 family 8 subfamily B member 1	protein-coding
225559	chr9	35909701	35909900	+	0	NA	intron (NM_001348107, intron 1 of 1)	intron (NM_001348107, intron 1 of 1)	310	NM_001348107	158376		NM_001348107	ENSG00000235387	SPAAR	LINC00961|SPAR	small regulatory polypeptide of amino acid response	protein-coding
51480	chr12	52079551	52080330	+	0	NA	exon (NM_001369216, exon 1 of 3)	exon (NM_001369216, exon 1 of 3)	236	NM_001369216	113523638		NM_001369216	ENSG00000284791	SMIM41	-	small integral membrane protein 41	protein-coding
180707	chr5	23507051	23507480	+	0	NA	promoter-TSS (NM_001310214)	promoter-TSS (NM_001310214)	110	NM_001376900	56979		NM_020227	ENSG00000164256	PRDM9	KMT8B|MEISETZ|MSBP3|PFM6|ZNF899	PR/SET domain 9	protein-coding
160673	chr3	32143821	32144500	+	0	NA	intron (NM_015141, intron 4 of 7)	L1MC4|LINE|L1	37540	NM_015141	23171		NM_015141	ENSG00000152642	GPD1L	GPD1-L	glycerol-3-phosphate dehydrogenase 1 like	protein-coding
98398	chr17	46567521	46567780	+	0	NA	intron (NM_001039083, intron 3 of 3).2	AluSx3|SINE|Alu	12041	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
115667	chr19	16143301	16144250	+	0	NA	promoter-TSS (NM_001369809)	promoter-TSS (NM_001369809)	90	NR_163153	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
150886	chr21	44136321	44136930	+	0	NA	intron (NR_135220, intron 2 of 5).2	intron (NR_135220, intron 2 of 5).2	2942	NM_001320384	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
1607	chr1	3656701	3657100	+	0	NA	intron (NM_001204185, intron 1 of 12)	Charlie4a|DNA|hAT-Charlie	4335	NM_001204187	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
234897	chrX	30888451	30890000	+	0	NA	promoter-TSS (NM_152787)	promoter-TSS (NM_152787)	29	NM_152787	257397		NM_152787	ENSG00000157625	TAB3	MAP3K7IP3|NAP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 3	protein-coding
121627	chr19	47438001	47438200	+	0	NA	intron (NM_015063, intron 6 of 9)	intron (NM_015063, intron 6 of 9)	-15867	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
104899	chr17	81893101	81893300	+	0	NA	intron (NM_001289417, intron 2 of 4)	AluSx3|SINE|Alu	1273	NM_001289416	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
40855	chr11	65077051	65077450	+	0	NA	TTS (NM_080668)	TTS (NM_080668)	6790	NM_080668	113130		NM_080668	ENSG00000146670	CDCA5	SORORIN	cell division cycle associated 5	protein-coding
141048	chr2	238242601	238242800	+	0	NA	Intergenic	Intergenic	-2662	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
20423	chr1	198233271	198233730	+	0	NA	intron (NM_133494, intron 2 of 9)	intron (NM_133494, intron 2 of 9)	76502	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
225385	chr9	35035901	35036700	+	0	NA	Intergenic	Intergenic	-4795	NM_001040411	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
195953	chr6	41939251	41939750	+	0	NA	intron (NM_001136126, intron 1 of 3)	intron (NM_001136126, intron 1 of 3)	2308	NM_001760	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
132158	chr2	101755201	101755400	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	57035	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
191618	chr6	12163071	12163830	+	0	NA	exon (NM_002114, exon 9 of 9)	exon (NM_002114, exon 9 of 9)	-126911	NM_001955	1906		NM_001955	ENSG00000078401	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
198415	chr6	106056171	106056930	+	0	NA	Intergenic	Intergenic	-29786	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
96580	chr17	40490601	40490800	+	0	NA	intron (NM_032865, intron 2 of 12)	intron (NM_032865, intron 2 of 12)	10923	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
149073	chr21	15731201	15731650	+	0	NA	intron (NM_001352560, intron 1 of 23)	intron (NM_001352560, intron 1 of 23)	1443	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
95415	chr17	36083771	36083930	+	0	NA	Intergenic	Intergenic	5848	NR_168496	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
214276	chr7	149007471	149008000	+	0	NA	intron (NM_001371244, intron 7 of 9)	intron (NM_001371244, intron 7 of 9)	17574	NR_163909	9601		NM_004911	ENSG00000155660	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A member 4	protein-coding
61608	chr13	73520801	73521500	+	0	NA	Intergenic	MIR3|SINE|MIR	-43094	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
176601	chr4	98998001	98998700	+	0	NA	TTS (NR_037455)	TTS (NR_037455)	963	NR_037455	100500867		NR_037455	ENSG00000265213	MIR3684	-	microRNA 3684	ncRNA
133461	chr2	119759221	119760630	+	0	NA	promoter-TSS (NM_002830)	promoter-TSS (NM_002830)	3	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
20375	chr1	198056271	198056580	+	0	NA	Intergenic	L1M2|LINE|L1	-100573	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
3725	chr1	16623901	16624300	+	0	NA	intron (NR_026752, intron 5 of 6)	intron (NR_026752, intron 5 of 6)	6806	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
198688	chr6	108073321	108073680	+	0	NA	intron (NM_014028, intron 1 of 5)	intron (NM_014028, intron 1 of 5)	1241	NM_014028	28962		NM_014028	ENSG00000081087	OSTM1	GIPN|GL|HSPC019|OPTB5	osteoclastogenesis associated transmembrane protein 1	protein-coding
215112	chr7	155329501	155330000	+	0	NA	Intergenic	Intergenic	31872	NM_005542	3638		NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding
191485	chr6	11210671	11211580	+	0	NA	intron (NM_182966, intron 2 of 2)	intron (NM_182966, intron 2 of 2)	21543	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
87268	chr16	69994351	69994600	+	0	NA	intron (NR_003610, intron 18 of 25)	MIRb|SINE|MIR	-35871	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
133790	chr2	127778471	127778830	+	0	NA	intron (NM_001006623, intron 1 of 7)	intron (NM_001006623, intron 1 of 7)	32521	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
163547	chr3	51681801	51682930	+	0	NA	intron (NM_001243727, intron 2 of 3)	intron (NM_001243727, intron 2 of 3)	10738	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
195603	chr6	37623871	37624300	+	0	NA	Intergenic	Intergenic	-68663	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
227695	chr9	93017721	93017980	+	0	NA	intron (NM_001369951, intron 10 of 17)	intron (NM_001369951, intron 10 of 17)	-2906	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
53672	chr12	68441151	68441750	+	0	NA	intron (NR_120458, intron 2 of 3)	L1MA5A|LINE|L1	10034	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
46534	chr11	128462721	128463530	+	0	NA	intron (NM_001143820, intron 9 of 9)	intron (NM_001143820, intron 9 of 9)	59185	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
176951	chr4	103073971	103074330	+	0	NA	intron (NM_001370207, intron 1 of 10)	MLT1L|LTR|ERVL-MaLR	2611	NM_001370204	133308		NM_178833	ENSG00000164038	SLC9B2	NHA2|NHE10|NHEDC2	solute carrier family 9 member B2	protein-coding
102840	chr17	76472521	76473050	+	0	NA	exon (NM_001376229, exon 18 of 19)	exon (NM_001376229, exon 18 of 19)	5182	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
111171	chr19	3356651	3358700	+	0	NA	Intergenic	Intergenic	-1955	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
207058	chr7	39734401	39735300	+	0	NA	intron (NR_026999, intron 1 of 11)	intron (NR_026999, intron 1 of 11)	1282	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
6799	chr1	30853901	30854450	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	29523	NR_146732	105378622		NR_146732	ENSG00000223382	LINC01778	-	long intergenic non-protein coding RNA 1778	ncRNA
76016	chr15	71780401	71780650	+	0	NA	3' UTR (NM_001286429, exon 12 of 12)	3' UTR (NM_001286429, exon 12 of 12)	-30029	NM_014249	10002		NM_014249	ENSG00000278570	NR2E3	ESCS|PNR|RNR|RP37|rd7	nuclear receptor subfamily 2 group E member 3	protein-coding
86231	chr16	58123201	58123800	+	0	NA	intron (NR_136632, intron 1 of 5)	AluYj4|SINE|Alu	5881	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
226137	chr9	63415501	63415900	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	81162	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
143069	chr20	21517351	21518180	+	0	NA	Intergenic	Intergenic	-3701	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
102375	chr17	75533421	75533880	+	0	NA	intron (NM_004524, intron 1 of 24)	L2a|LINE|L2	7948	NM_001015002	3993		NM_004524	ENSG00000073350	LLGL2	HGL|Hugl-2|LGL2	LLGL scribble cell polarity complex component 2	protein-coding
58299	chr12	130838471	130839850	+	0	NA	promoter-TSS (NM_001351051)	promoter-TSS (NM_001351051)	90	NM_001351051	2054		NM_001980	ENSG00000111450	STX2	EPIM|EPM|STX2A|STX2B|STX2C	syntaxin 2	protein-coding
230520	chr9	128324151	128324450	+	0	NA	intron (NM_001305942, intron 2 of 3)	AluJb|SINE|Alu	1461	NM_001305942	51117		NM_016035	ENSG00000167113	COQ4	CGI-92|COQ10D7|SPAX10	coenzyme Q4	protein-coding
67417	chr14	70188521	70189230	+	0	NA	promoter-TSS (NR_104122)	promoter-TSS (NR_104122)	76	NM_058240	6547		NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding
100073	chr17	58249251	58250430	+	0	NA	intron (NR_027647, intron 5 of 11)	CpG-11471	11256	NM_006151	4025		NM_006151	ENSG00000167419	LPO	SPO	lactoperoxidase	protein-coding
28911	chr10	63161651	63161950	+	0	NA	Intergenic	Tigger9b|DNA|TcMar-Tigger	28472	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
155942	chr22	39679851	39679950	+	0	NA	intron (NM_001003406, intron 32 of 35)	intron (NM_001003406, intron 32 of 35)	109147	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
208124	chr7	59687051	59687150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2236923	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
119429	chr19	40350321	40350780	+	0	NA	intron (NM_012268, intron 1 of 12)	AluSx|SINE|Alu	1855	NM_012268	23646		NM_012268	ENSG00000105223	PLD3	AD19|HU-K4|HUK4|SCA46	phospholipase D family member 3	protein-coding
37023	chr11	12102521	12102780	+	0	NA	Intergenic	Intergenic	-7926	NM_001282668	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
131123	chr2	90380801	90381000	+	0	NA	Intergenic	Intergenic	-742993	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
229798	chr9	125298001	125298200	+	0	NA	intron (NM_001354299, intron 4 of 28)	L2a|LINE|L2	36274	NM_001354295	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
52697	chr12	56513571	56514130	+	0	NA	TTS (NR_132789)	TTS (NR_132789)	985	NR_132789	106635541		NR_132789		SNORA105C	-	small nucleolar RNA, H/ACA box 105C	snoRNA
235440	chrX	46208471	46208700	+	0	NA	Intergenic	Intergenic	119089	NR_110388	101927574		NR_110388		LINC01186	ZNF674-1	long intergenic non-protein coding RNA 1186	ncRNA
32220	chr10	101812171	101812700	+	0	NA	intron (NM_001142434, intron 3 of 14)	intron (NM_001142434, intron 3 of 14)	6009	NM_012215	10724		NM_012215	ENSG00000198408	OGA	MEA5|MGEA5|NCOAT	O-GlcNAcase	protein-coding
36385	chr11	3991971	3992350	+	0	NA	intron (NM_001382568, intron 2 of 11)	AluSz6|SINE|Alu	-102525	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
188257	chr5	151077421	151077750	+	0	NA	intron (NM_001252390, intron 1 of 17)	intron (NM_001252390, intron 1 of 17)	3449	NM_001252386	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
176865	chr4	102617501	102617700	+	0	NA	TTS (NM_003998)	TTS (NM_003998)	-115114	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
161772	chr3	44977421	44977880	+	0	NA	intron (NR_023353, intron 1 of 6)	intron (NR_023353, intron 1 of 6)	1401	NR_023353	23016		NM_015004	ENSG00000075914	EXOSC7	EAP1|RRP42|Rrp42p|hRrp42p|p8	exosome component 7	protein-coding
139132	chr2	218997101	218997300	+	0	NA	Intergenic	Intergenic	-3778	NM_057094	1412		NM_057093	ENSG00000163499	CRYBA2	CTRCT42	crystallin beta A2	protein-coding
117627	chr19	23379601	23379850	+	0	NA	intron (NM_003430, intron 1 of 3)	LTR70|LTR|ERV1	15746	NM_003430	7644		NM_003430	ENSG00000167232	ZNF91	HPF7|HTF10	zinc finger protein 91	protein-coding
31557	chr10	97210551	97210930	+	0	NA	intron (NR_037909, intron 11 of 14)	intron (NR_037909, intron 11 of 14)	-24781	NM_003061	6585		NM_003061	ENSG00000187122	SLIT1	MEGF4|SLIL1|SLIT-1|SLIT3	slit guidance ligand 1	protein-coding
126705	chr2	30164301	30165430	+	0	NA	Intergenic	Intergenic	17858	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
195704	chr6	38704771	38705130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1805	NM_006708	2739		NM_006708	ENSG00000124767	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
5927	chr1	26856571	26856730	+	0	NA	3' UTR (NM_032283, exon 8 of 8)	3' UTR (NM_032283, exon 8 of 8)	-6499	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
72410	chr15	31431401	31431800	+	0	NA	intron (NM_001302461, intron 1 of 1).3	AluSc8|SINE|Alu	104765	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
176739	chr4	101410971	101411450	+	0	NA	Intergenic	L1PA2|LINE|L1	63433	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
30934	chr10	87303871	87304230	+	0	NA	intron (NR_024397, intron 3 of 5)	intron (NR_024397, intron 3 of 5)	-38361	NR_029408	439994		NR_029408	ENSG00000224914	LINC00863	-	long intergenic non-protein coding RNA 863	ncRNA
208999	chr7	74257851	74258150	+	0	NA	Intergenic	AluSz|SINE|Alu	-3542	NM_002914	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
138997	chr2	218324221	218324550	+	0	NA	intron (NM_022572, intron 1 of 8)	intron (NM_022572, intron 1 of 8)	1206	NM_022572	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
230377	chr9	128079671	128079830	+	0	NA	intron (NM_001006641, intron 1 of 9)	AluSc|SINE|Alu	11550	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
210241	chr7	99379991	99383250	+	0	NA	intron (NM_005720, intron 1 of 9)	intron (NM_005720, intron 1 of 9)	6890	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
100379	chr17	60135451	60136580	+	0	NA	Intergenic	MIR3|SINE|MIR	-13958	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
64579	chr14	24694421	24696730	+	0	NA	Intergenic	Intergenic	-61385	NM_001346011	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
42599	chr11	72081871	72082030	+	0	NA	intron (NM_001145308, intron 1 of 6)	MIRc|SINE|MIR	1100	NM_001318803	120356739		NM_145309	ENSG00000184154	LRRC51	-	leucine rich repeat containing 51	protein-coding
229766	chr9	125194671	125196230	+	0	NA	Intergenic	Intergenic	4946	NR_135145	105376271		NR_135145		LOC105376271	-	uncharacterized LOC105376271	ncRNA
65546	chr14	51928371	51928730	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-9979	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
125215	chr2	10312151	10312850	+	0	NA	intron (NM_134421, intron 1 of 5)	(CATCAT)n|Simple_repeat|Simple_repeat	8800	NM_134421	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
180882	chr5	33899271	33899630	+	0	NA	Intergenic	Intergenic	-7460	NM_001324512	81792		NM_030955	ENSG00000151388	ADAMTS12	PRO4389	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein-coding
143363	chr20	26057171	26057530	+	0	NA	intron (NR_026713, intron 1 of 4)	SST1|Satellite|centr	2736	NR_026713	284800		NM_182583	ENSG00000125804	FAM182A	C20orf91|C20orf91A	family with sequence similarity 182 member A	ncRNA
68118	chr14	75493471	75493630	+	0	NA	Intergenic	Intergenic	-28919	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
196214	chr6	42778921	42779380	+	0	NA	intron (NM_001318819, intron 1 of 13)	AluJr|SINE|Alu	-4346	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
166337	chr3	112958821	112960200	+	0	NA	intron (NM_138939, intron 1 of 3)	intron (NM_138939, intron 1 of 3)	15593	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
155024	chr22	37428801	37429380	+	0	NA	Intergenic	L2c|LINE|L2	-1611	NM_052906	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
121452	chr19	47041951	47042050	+	0	NA	intron (NM_002517, intron 10 of 11)	AluJb|SINE|Alu	6624	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
2789	chr1	10903551	10904100	+	0	NA	Intergenic	Intergenic	62862	NM_001366227	148345		NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding
193972	chr6	31713801	31714400	+	0	NA	promoter-TSS (NR_024541)	promoter-TSS (NR_024541)	-35	NR_024541	79136		NM_024123		LY6G6E	C6orf22|G6e	lymphocyte antigen 6 family member G6E (pseudogene)	pseudo
53225	chr12	62292901	62293330	+	0	NA	intron (NM_001351164, intron 1 of 21)	L1PA15-16|LINE|L1	32711	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
48908	chr12	12564971	12565130	+	0	NA	Intergenic	L2c|LINE|L2	-2187	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
234879	chrX	30570521	30570950	+	0	NA	intron (NM_025159, intron 2 of 2)	intron (NM_025159, intron 2 of 2)	7031	NM_025159	80231		NM_025159	ENSG00000120280	TASL	CXorf21	TLR adaptor interacting with endolysosomal SLC15A4	protein-coding
104877	chr17	81867901	81868880	+	0	NA	non-coding (NR_125441, exon 5 of 5)	non-coding (NR_125441, exon 5 of 5)	2607	NM_001185077	396		NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
68811	chr14	91254301	91255380	+	0	NA	promoter-TSS (NM_001348437)	promoter-TSS (NM_001348437)	-960	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
33667	chr10	119867651	119867750	+	0	NA	intron (NM_001256379, intron 1 of 15)	intron (NM_001256379, intron 1 of 15)	5143	NM_001256378	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
34817	chr11	288601	289800	+	0	NA	promoter-TSS (NM_025092)	promoter-TSS (NM_025092)	74	NM_025092	80162		NM_025092	ENSG00000142102	PGGHG	ATHL1	protein-glucosylgalactosylhydroxylysine glucosidase	protein-coding
218775	chr8	58980151	58980450	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	138847	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
144559	chr20	35740751	35741200	+	0	NA	intron (NR_136587, intron 1 of 4)	intron (NR_136587, intron 1 of 4)	1285	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
44889	chr11	114405001	114405400	+	0	NA	intron (NM_016090, intron 3 of 4)	MER58A|DNA|hAT-Charlie	4534	NM_016090	10179		NM_016090	ENSG00000076053	RBM7	-	RNA binding motif protein 7	protein-coding
99439	chr17	50125721	50126430	+	0	NA	intron (NM_174920, intron 1 of 10)	intron (NM_174920, intron 1 of 10)	4085	NM_001257359	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
7773	chr1	36186301	36187180	+	0	NA	Intergenic	L2b|LINE|L2	30580	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
4301	chr1	20183901	20184300	+	0	NA	TTS (NR_110078)	TTS (NR_110078)	-1996	NM_152376	127733		NM_152376	ENSG00000162543	UBXN10	UBXD3	UBX domain protein 10	protein-coding
186071	chr5	134090271	134091730	+	0	NA	Intergenic	Intergenic	-23681	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
34034	chr10	124725201	124725830	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	18863	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
149379	chr21	31011101	31011750	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	27051	NM_001099219	728299		NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
33378	chr10	117377051	117377150	+	0	NA	Intergenic	Intergenic	-1660	NM_173791	118987		NM_173791	ENSG00000165650	PDZD8	IDDADF|PDZK8	PDZ domain containing 8	protein-coding
59006	chr13	20142901	20143100	+	0	NA	exon (NM_021954, exon 2 of 2)	exon (NM_021954, exon 2 of 2)	18052	NM_021954	2700		NM_021954	ENSG00000121743	GJA3	CTRCT14|CX46|CZP3	gap junction protein alpha 3	protein-coding
184930	chr5	112974551	112974850	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-2098	NM_001242377	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
108092	chr18	61892151	61892250	+	0	NA	intron (NM_173557, intron 1 of 1)	intron (NM_173557, intron 1 of 1)	807	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
122091	chr19	48744851	48745780	+	0	NA	intron (NM_001321864, intron 1 of 8)	intron (NM_001321864, intron 1 of 8)	617	NR_135832	284359		NM_182575	ENSG00000182264	IZUMO1	IZUMO|OBF	izumo sperm-oocyte fusion 1	protein-coding
15441	chr1	150297121	150297650	+	0	NA	intron (NM_031901, intron 2 of 2)	intron (NM_031901, intron 2 of 2)	3524	NM_031901	54460		NM_018997	ENSG00000266472	MRPS21	MDS016|MRP-S21|RPMS21|bS21m	mitochondrial ribosomal protein S21	protein-coding
11449	chr1	89847351	89847800	+	0	NA	intron (NM_001134479, intron 2 of 2)	intron (NM_001134479, intron 2 of 2)	25636	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
142702	chr20	8154671	8155030	+	0	NA	intron (NM_015192, intron 2 of 31)	L1MC|LINE|L1	22584	NM_182734	23236		NM_015192	ENSG00000182621	PLCB1	DEE12|EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B	phospholipase C beta 1	protein-coding
224489	chr9	16871001	16871200	+	0	NA	promoter-TSS (NM_001317939)	promoter-TSS (NM_001317939)	-430	NM_017637	54796		NM_017637	ENSG00000173068	BNC2	BSN2|LUTO|bn2	basonuclin zinc finger protein 2	protein-coding
165185	chr3	72443821	72444100	+	0	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	2663	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
79863	chr16	1496071	1496700	+	0	NA	intron (NM_016111, intron 3 of 20)	intron (NM_016111, intron 3 of 20)	3025	NM_016111	9894		NM_016111	ENSG00000100726	TELO2	CLK2|TEL2|YHFS	telomere maintenance 2	protein-coding
163825	chr3	52450271	52450500	+	0	NA	TTS (NM_003280)	TTS (NM_003280)	3656	NM_003280	7134		NM_003280	ENSG00000114854	TNNC1	CMD1Z|CMH13|TN-C|TNC|TNNC	troponin C1, slow skeletal and cardiac type	protein-coding
60492	chr13	41309351	41309650	+	0	NA	intron (NM_001354073, intron 1 of 14)	L1PA15|LINE|L1	-1767	NM_024561	79612		NM_018527	ENSG00000172766	NAA16	NARG1L	N-alpha-acetyltransferase 16, NatA auxiliary subunit	protein-coding
10266	chr1	64540021	64540680	+	0	NA	intron (NM_001293274, intron 1 of 25)	intron (NM_001293274, intron 1 of 25)	34436	NM_001293274	57685		NM_020925	ENSG00000158966	CACHD1	-	cache domain containing 1	protein-coding
238147	chrX	136762801	136763600	+	0	NA	intron (NM_004840, intron 2 of 21)	MIRc|SINE|MIR	4615	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
219444	chr8	72881021	72881280	+	0	NA	intron (NM_004770, intron 2 of 2)	L1HS|LINE|L1	-127714	NM_003218	7013		NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding
108149	chr18	62566271	62566430	+	0	NA	intron (NM_017742, intron 11 of 13)	intron (NM_017742, intron 11 of 13)	43325	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
147935	chr20	62927721	62927980	+	0	NA	intron (NM_022105, intron 1 of 5)	intron (NM_022105, intron 1 of 5)	-1299	NM_080796	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
170394	chr3	184895611	184895750	+	0	NA	intron (NM_001349295, intron 22 of 46)	AluSz|SINE|Alu	83173	NR_146115	23355		NM_015303	ENSG00000156931	VPS8	KIAA0804	VPS8 subunit of CORVET complex	protein-coding
147502	chr20	59173371	59173530	+	0	NA	intron (NM_178457, intron 1 of 5)	ERVL-E-int|LTR|ERVL	9629	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
236082	chrX	56767471	56768630	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-30466	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
115648	chr19	16116771	16117130	+	0	NA	intron (NM_005370, intron 1 of 7)	L1MB5|LINE|L1	5061	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
185997	chr5	133754651	133754750	+	0	NA	Intergenic	Intergenic	-142159	NM_015082	23105		NM_015082	ENSG00000053108	FSTL4	-	follistatin like 4	protein-coding
229330	chr9	120899201	120899900	+	0	NA	Intergenic	Intergenic	-4654	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
219050	chr8	65788901	65789350	+	0	NA	promoter-TSS (NM_002603)	promoter-TSS (NM_002603)	-68	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
109551	chr19	880271	880430	+	0	NA	intron (NM_005481, intron 7 of 15)	intron (NM_005481, intron 7 of 15)	12837	NM_005481	10025		NM_005481	ENSG00000175221	MED16	DRIP92|THRAP5|TRAP95	mediator complex subunit 16	protein-coding
37393	chr11	17116321	17116580	+	0	NA	intron (NM_002645, intron 19 of 32)	L1MB5|LINE|L1	-38783	NM_001017	6207		NM_001017	ENSG00000110700	RPS13	S13|uS15	ribosomal protein S13	protein-coding
209262	chr7	75895121	75895780	+	0	NA	Intergenic	AluJo|SINE|Alu	16416	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
80015	chr16	1926421	1926680	+	0	NA	Intergenic	Intergenic	-8135	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
70627	chr14	102818121	102818400	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	40781	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
179236	chr4	174217121	174217400	+	0	NA	intron (NR_125896, intron 1 of 4)	intron (NR_125896, intron 1 of 4)	3138	NR_125896	101928509		NR_125896	ENSG00000248174	LINC02268	-	long intergenic non-protein coding RNA 2268	ncRNA
178926	chr4	158826951	158827450	+	0	NA	intron (NM_001366843, intron 2 of 17)	intron (NM_001366843, intron 2 of 17)	21361	NM_001366843	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
129087	chr2	65114901	65115500	+	0	NA	intron (NM_004161, intron 1 of 5)	MSTD|LTR|ERVL-MaLR	14906	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
139964	chr2	230873571	230873730	+	0	NA	intron (NM_001287240, intron 2 of 5)	intron (NM_001287240, intron 2 of 5)	8700	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
220481	chr8	100464371	100464530	+	0	NA	Intergenic	Intergenic	81687	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
51982	chr12	53953751	53954500	+	0	NA	promoter-TSS (NM_173860)	promoter-TSS (NM_173860)	-778	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
226269	chr9	68244121	68244900	+	0	NA	intron (NM_001378115, intron 1 of 13)	L1M5|LINE|L1	2527	NM_201453	445571		NM_201453	ENSG00000196873	ZNG1C	CBWD3|bA561O23.1	Zn regulated GTPase metalloprotein activator 1C	protein-coding
63511	chr13	114265401	114265930	+	0	NA	intron (NM_001330104, intron 16 of 16)	intron (NM_001330104, intron 16 of 16)	-8163	NR_039724	100616227		NR_039724	ENSG00000265450	MIR4502	-	microRNA 4502	ncRNA
89050	chr16	88438671	88438830	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-14530	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
123629	chr19	54617221	54618280	+	0	NA	intron (NM_006669, intron 1 of 15).2	MER4B-int|LTR|ERV1	820	NM_006669	10859		NM_006669	ENSG00000104972	LILRB1	CD85J|ILT-2|ILT2|LIR-1|LIR1|MIR-7|MIR7|PIR-B|PIRB	leukocyte immunoglobulin like receptor B1	protein-coding
210823	chr7	100888961	100890830	+	0	NA	promoter-TSS (NM_001015072)	promoter-TSS (NM_001015072)	-180	NM_001015072	402682		NM_001015072	ENSG00000176125	UFSP1	UFSP	UFM1 specific peptidase 1 (inactive)	protein-coding
97563	chr17	44086021	44086280	+	0	NA	intron (NM_001382393, intron 14 of 26)	intron (NM_001382393, intron 14 of 26)	15239	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
229284	chr9	120713251	120715650	+	0	NA	promoter-TSS (NM_001080497)	promoter-TSS (NM_001080497)	20	NM_001080497	1955		NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
166831	chr3	122893371	122893530	+	0	NA	Intergenic	Intergenic	6937	NR_024618	100129550		NR_024618	ENSG00000273033	LINC02035	-	long intergenic non-protein coding RNA 2035	ncRNA
191992	chr6	16236651	16237200	+	0	NA	Intergenic	Intergenic	-1662	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
26805	chr10	23438501	23440930	+	0	NA	exon (NM_001145373, exon 1 of 1)	exon (NM_001145373, exon 1 of 1)	640	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
206987	chr7	38329971	38330350	+	0	NA	Intergenic	Intergenic	-11417	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
140551	chr2	233264371	233264930	+	0	NA	intron (NM_001190266, intron 4 of 17).2	intron (NM_001190266, intron 4 of 17).2	-11076	NR_003008	677775		NR_003008	ENSG00000252010	SCARNA5	U87	small Cajal body-specific RNA 5	ncRNA
26491	chr10	17757021	17757280	+	0	NA	intron (NM_001098844, intron 1 of 3)	intron (NM_001098844, intron 1 of 3)	4949	NM_001098844	653567		NM_001013629	ENSG00000148483	TMEM236	FAM23A|FAM23B|bA162I21.2|bA16O1.2	transmembrane protein 236	protein-coding
136989	chr2	190530421	190530780	+	0	NA	intron (NR_136298, intron 1 of 8)	intron (NR_136298, intron 1 of 8)	4122	NM_001142645	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
166516	chr3	114336171	114336400	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-15526	NR_038993	100131117		NR_038993	ENSG00000241560	ZBTB20-AS1	-	ZBTB20 antisense RNA 1	ncRNA
14553	chr1	144914001	144914250	+	0	NA	intron (NM_001385227, intron 4 of 8)	intron (NM_001385227, intron 4 of 8)	-180171	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
230871	chr9	129175601	129176900	+	0	NA	3' UTR (NM_203434, exon 1 of 1)	3' UTR (NM_203434, exon 1 of 1)	2011	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
214249	chr7	148886101	148886900	+	0	NA	Intergenic	Intergenic	-2209	NM_001203247	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
82478	chr16	17273101	17273400	+	0	NA	intron (NM_022166, intron 2 of 11)	MER20B|DNA|hAT-Charlie	138746	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
49545	chr12	26701671	26701900	+	0	NA	intron (NM_002223, intron 9 of 56)	intron (NM_002223, intron 9 of 56)	131409	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
104371	chr17	81019521	81020100	+	0	NA	Intergenic	Intergenic	14909	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
84915	chr16	31224121	31224730	+	0	NA	exon (NM_001008274, exon 7 of 7)	exon (NM_001008274, exon 7 of 7)	-7290	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
150550	chr21	43079971	43080530	+	0	NA	Intergenic	Intergenic	-3307	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
112456	chr19	6380871	6381930	+	0	NA	exon (NM_002096, exon 9 of 13)	exon (NM_002096, exon 9 of 13)	-5484	NM_004158	5623		NM_004158	ENSG00000125650	PSPN	PSP	persephin	protein-coding
6065	chr1	27144851	27145550	+	0	NA	intron (NM_003047, intron 1 of 11)	L2c|LINE|L2	9925	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
198293	chr6	100196651	100197030	+	0	NA	Intergenic	L1PA2|LINE|L1	-202602	NM_032503	84539		NM_032503	ENSG00000152034	MCHR2	GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT	melanin concentrating hormone receptor 2	protein-coding
13416	chr1	114010751	114011050	+	0	NA	Intergenic	Intergenic	31426	NM_020190	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
128538	chr2	60808671	60808900	+	0	NA	Intergenic	Intergenic	52517	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
133338	chr2	113911301	113911700	+	0	NA	intron (NM_001277140, intron 1 of 11)	AluSx1|SINE|Alu	-20508	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
199101	chr6	111674501	111675080	+	0	NA	intron (NM_001370529, intron 10 of 11)	intron (NM_001370529, intron 10 of 11)	-68516	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
88002	chr16	80806801	80807200	+	0	NA	Intergenic	Intergenic	-2402	NM_152342	124359		NM_152342	ENSG00000166446	CDYL2	PCCP1	chromodomain Y like 2	protein-coding
55799	chr12	108685871	108686030	+	0	NA	intron (NM_014325, intron 2 of 10)	intron (NM_014325, intron 2 of 10)	17048	NM_001105237	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
51791	chr12	53368901	53369800	+	0	NA	Intergenic	Intergenic	-10826	NM_001251825	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
208670	chr7	73211351	73213080	+	0	NA	Intergenic	Intergenic	-8424	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
235054	chrX	40110851	40111330	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	-13132	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
180750	chr5	32093151	32093630	+	0	NA	intron (NM_178140, intron 21 of 24)	intron (NM_178140, intron 21 of 24)	80929	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
104658	chr17	81481221	81482300	+	0	NA	Intergenic	CpG	-30572	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
108176	chr18	62957801	62958100	+	0	NA	intron (NM_194449, intron 12 of 16)	AluSq2|SINE|Alu	242409	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
143110	chr20	23365401	23365600	+	0	NA	exon (NM_022482, exon 2 of 6)	exon (NM_022482, exon 2 of 6)	1137	NM_001317019	64412		NM_022482	ENSG00000125812	GZF1	JLSM|ZBTB23|ZNF336	GDNF inducible zinc finger protein 1	protein-coding
23030	chr1	226418001	226418400	+	0	NA	Intergenic	Intergenic	-10107	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
11813	chr1	92835001	92835850	+	0	NA	intron (NM_000969, intron 4 of 7)	AluSq2|SINE|Alu	-1864	NR_000006	6083		NR_000006	ENSG00000206680	SNORD21	RNU21|U21	small nucleolar RNA, C/D box 21	snoRNA
72151	chr15	29088971	29089130	+	0	NA	intron (NM_001353793, intron 5 of 12).2	L2b|LINE|L2	18392	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
46115	chr11	122884601	122884800	+	0	NA	intron (NM_001363089, intron 1 of 8)	L3|LINE|CR1	1770	NM_001363089	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
163792	chr3	52399271	52399880	+	0	NA	exon (NM_015512, exon 77 of 78)	exon (NM_015512, exon 77 of 78)	10433	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
5975	chr1	26927001	26927500	+	0	NA	intron (NM_006600, intron 2 of 8)	intron (NM_006600, intron 2 of 8)	5507	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
214027	chr7	143285401	143285800	+	0	NA	5' UTR (NM_001242774, exon 3 of 5)	5' UTR (NM_001242774, exon 3 of 5)	642	NM_001282876	135932		NM_153345	ENSG00000178826	TMEM139	-	transmembrane protein 139	protein-coding
104908	chr17	81903551	81904200	+	0	NA	TTS (NM_148896)	TTS (NM_148896)	1637	NM_148896	256933		NM_148896	ENSG00000183979	NPB	L7|PPL7|PPNPB	neuropeptide B	protein-coding
84727	chr16	30925421	30925880	+	0	NA	intron (NM_001099784, intron 1 of 10)	intron (NM_001099784, intron 1 of 10)	1075	NM_001099784	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
25636	chr10	8132851	8133350	+	0	NA	Intergenic	(TTCTT)n|Simple_repeat|Simple_repeat	78412	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
10480	chr1	66351501	66352550	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	-2510	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
149346	chr21	29076251	29077790	+	0	NA	promoter-TSS (NM_020152)	promoter-TSS (NM_020152)	-94	NM_001286617	56911		NM_020152	ENSG00000156265	MAP3K7CL	C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4	MAP3K7 C-terminal like	protein-coding
56153	chr12	111367171	111367750	+	0	NA	intron (NM_144671, intron 1 of 2)	MIRb|SINE|MIR	1635	NM_001177996	144717		NM_144671	ENSG00000198324	PHETA1	FAM109A|IPIP27A|SES1	PH domain containing endocytic trafficking adaptor 1	protein-coding
153111	chr22	23627471	23627830	+	0	NA	intron (NM_016449, intron 1 of 11)	intron (NM_016449, intron 1 of 11)	4671	NM_016449	51233		NM_016449	ENSG00000189269	DRICH1	C22orf43|KB-208E9.1	aspartate rich 1	protein-coding
121920	chr19	48424701	48425050	+	0	NA	intron (NM_000836, intron 11 of 13)	intron (NM_000836, intron 11 of 13)	-21108	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
113191	chr19	8415221	8415730	+	0	NA	intron (NM_001369776, intron 1 of 5)	AluSq2|SINE|Alu	2170	NR_163145	51257		NM_016496	ENSG00000099785	MARCHF2	HSPC240|MARCH-II|MARCH2|RNF172	membrane associated ring-CH-type finger 2	protein-coding
72858	chr15	40258771	40258930	+	0	NA	intron (NM_001128628, intron 3 of 10)	intron (NM_001128628, intron 3 of 10)	5672	NM_001276717	56924		NM_020168	ENSG00000137843	PAK6	PAK5	p21 (RAC1) activated kinase 6	protein-coding
73338	chr15	41974801	41975030	+	0	NA	intron (NR_120334, intron 2 of 3)	L1MC1|LINE|L1	2152	NR_120334	101928388		NR_120334	ENSG00000246740	PLA2G4E-AS1	-	PLA2G4E antisense RNA 1	ncRNA
66905	chr14	65282921	65283530	+	0	NA	Intergenic	Intergenic	51958	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
74074	chr15	52658871	52659480	+	0	NA	intron (NR_169533, intron 3 of 3)	L2a|LINE|L2	-7135	NR_169552	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
223743	chr8	144506721	144507130	+	0	NA	exon (NM_005309, exon 11 of 11)	exon (NM_005309, exon 11 of 11)	-2111	NR_130120	113655		NM_138431	ENSG00000167700	MFSD3	SLC33A2	major facilitator superfamily domain containing 3	protein-coding
115960	chr19	16887671	16888030	+	0	NA	Intergenic	Intergenic	-1149	NM_003950	9002		NM_003950	ENSG00000127533	F2RL3	PAR4	F2R like thrombin or trypsin receptor 3	protein-coding
85685	chr16	56423871	56424390	+	0	NA	intron (NM_001144, intron 1 of 13)	intron (NM_001144, intron 1 of 13)	859	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
213941	chr7	142670451	142670950	+	0	NA	intron (NM_001363538, intron 10 of 11)	intron (NM_001363538, intron 10 of 11)	4401	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
136548	chr2	177394421	177394680	+	0	NA	intron (NM_003659, intron 1 of 19)	intron (NM_003659, intron 1 of 19)	1777	NM_003659	8540		NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3	alkylglycerone phosphate synthase	protein-coding
183813	chr5	82793871	82794030	+	0	NA	Intergenic	Intergenic	-46205	NR_039773	100616297		NR_039773	ENSG00000283359	MIR3977	-	microRNA 3977	ncRNA
114224	chr19	11464771	11465430	+	0	NA	intron (NM_001420, intron 3 of 6)	(AC)n|Simple_repeat|Simple_repeat	15946	NM_032281	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
3777	chr1	16694951	16695380	+	0	NA	intron (NR_026567, intron 10 of 10)	intron (NR_026567, intron 10 of 10)	13910	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
234846	chrX	24496301	24496700	+	0	NA	intron (NM_001142386, intron 2 of 11)	L1MC4|LINE|L1	31214	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
131770	chr2	98477201	98477580	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	31380	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
129314	chr2	68716451	68716780	+	0	NA	Intergenic	Intergenic	-18196	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
169130	chr3	155874851	155875300	+	0	NA	intron (NM_003875, intron 1 of 15)	AluSz|SINE|Alu	4425	NM_003875	8833		NM_003875	ENSG00000163655	GMPS	GATD7	guanine monophosphate synthase	protein-coding
135257	chr2	159724971	159725330	+	0	NA	intron (NM_001376237, intron 2 of 10)	L1PA5|LINE|L1	-8814	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
223644	chr8	144347471	144348000	+	0	NA	Intergenic	L1MD3|LINE|L1	7196	NM_001252404	340393		NM_001252402	ENSG00000261587	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
205259	chr7	8131821	8133000	+	0	NA	intron (NR_146926, intron 12 of 13)	intron (NR_146926, intron 12 of 13)	129757	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
95632	chr17	37743301	37743700	+	0	NA	intron (NM_000458, intron 1 of 8)	CpG	1559	NM_001304286	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
190272	chr5	179528601	179528800	+	0	NA	intron (NM_001305388, intron 3 of 5)	AluSz|SINE|Alu	6243	NM_001142306	285679		NM_001013718	ENSG00000204661	C5orf60	-	chromosome 5 open reading frame 60	ncRNA
196800	chr6	45922721	45923250	+	0	NA	intron (NR_045673, intron 1 of 4)	intron (NR_045673, intron 1 of 4)	14612	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
42825	chr11	72832671	72832830	+	0	NA	Intergenic	MIR3|SINE|MIR	18339	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
100346	chr17	59902671	59903330	+	0	NA	intron (NM_001272044, intron 2 of 15)	AluJb|SINE|Alu	9879	NR_161457	6198		NM_003161	ENSG00000108443	RPS6KB1	PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha	ribosomal protein S6 kinase B1	protein-coding
125493	chr2	12506921	12507880	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-209472	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
70974	chr14	104704401	104704950	+	0	NA	3' UTR (NM_032714, exon 5 of 5)	3' UTR (NM_032714, exon 5 of 5)	15057	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
124095	chr19	55643001	55644430	+	0	NA	promoter-TSS (NM_016535)	promoter-TSS (NM_016535)	66	NM_016535	51545		NM_016535	ENSG00000171425	ZNF581	HSPC189	zinc finger protein 581	protein-coding
18740	chr1	167480251	167480600	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	38104	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
125080	chr2	9680901	9681900	+	0	NA	Intergenic	Intergenic	-50403	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
191437	chr6	10533771	10534480	+	0	NA	intron (NM_145649, intron 3 of 4)	intron (NM_145649, intron 3 of 4)	5755	NM_001374747	2651		NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein-coding
137170	chr2	191115201	191116730	+	0	NA	intron (NM_003151, intron 3 of 23)	MamRTE1|LINE|RTE-BovB	35029	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
36850	chr11	10309021	10309280	+	0	NA	intron (NR_103765, intron 1 of 3)	intron (NR_103765, intron 1 of 3)	837	NR_103765	100130460		NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
131558	chr2	96773861	96776000	+	0	NA	intron (NM_020184, intron 1 of 6)	AluSx|SINE|Alu	14028	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
85184	chr16	46857571	46858030	+	0	NA	Intergenic	Intergenic	-26562	NM_133443	84706		NM_133443	ENSG00000166123	GPT2	ALT2|GPT 2|MRT49|NEDSPM	glutamic--pyruvic transaminase 2	protein-coding
155879	chr22	39512051	39512150	+	0	NA	intron (NR_130789, intron 4 of 5)	L2a|LINE|L2	-8459	NM_001675	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
24197	chr1	236027121	236027380	+	0	NA	intron (NM_002508, intron 7 of 19)	intron (NM_002508, intron 7 of 19)	37840	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
237676	chrX	124348171	124348600	+	0	NA	intron (NM_002351, intron 1 of 3)	intron (NM_002351, intron 1 of 3)	1822	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
178822	chr4	153537251	153537550	+	0	NA	intron (NM_015196, intron 3 of 34)	MER41A|LTR|ERV1	71040	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
3711	chr1	16607921	16608380	+	0	NA	intron (NM_017940, intron 2 of 28)	intron (NM_017940, intron 2 of 28)	5414	NM_017940	55672		NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	NBPF member 1	protein-coding
105628	chr18	809501	809780	+	0	NA	intron (NM_005433, intron 1 of 11)	intron (NM_005433, intron 1 of 11)	2602	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
60829	chr13	45398551	45399630	+	0	NA	intron (NM_001286806, intron 6 of 8)	intron (NM_001286806, intron 6 of 8)	-19072	NR_047031	100874259		NR_047031	ENSG00000251015	SLC25A30-AS1	-	SLC25A30 antisense RNA 1	ncRNA
79726	chr16	1324151	1324850	+	0	NA	intron (NM_194259, intron 7 of 7)	intron (NM_194259, intron 7 of 7)	-9145	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
234024	chrX	3714971	3715130	+	0	NA	Intergenic	Intergenic	-1401	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
225337	chr9	34633621	34634350	+	0	NA	TTS (NM_001282205)	TTS (NM_001282205)	3802	NM_001282205	10280		NM_005866	ENSG00000147955	SIGMAR1	ALS16|DSMA2|HMNR2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding
189990	chr5	177459971	177460430	+	0	NA	intron (NM_001364151, intron 10 of 14)	intron (NM_001364151, intron 10 of 14)	2226	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
83321	chr16	24731851	24732350	+	0	NA	intron (NM_001330520, intron 2 of 23)	intron (NM_001330520, intron 2 of 23)	2449	NM_014494	27327		NM_014494	ENSG00000090905	TNRC6A	CAGH26|FAME6|GW1|GW182|TNRC6	trinucleotide repeat containing adaptor 6A	protein-coding
167068	chr3	126988921	126989230	+	0	NA	exon (NM_032242, exon 1 of 31)	exon (NM_032242, exon 1 of 31)	481	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
50984	chr12	49567201	49568680	+	0	NA	intron (NM_006337, intron 1 of 14)	CpG	202	NM_006337	10445		NM_006337	ENSG00000187778	MCRS1	ICP22BP|INO80Q|MCRS2|MSP58|P78	microspherule protein 1	protein-coding
152477	chr22	20750521	20751080	+	0	NA	intron (NM_001362863, intron 26 of 53)	intron (NM_001362863, intron 26 of 53)	-23313	NM_000185	3053		NM_000185	ENSG00000099937	SERPIND1	D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10	serpin family D member 1	protein-coding
11943	chr1	93845751	93846900	+	0	NA	promoter-TSS (NR_030621)	promoter-TSS (NR_030621)	-507	NR_030621	100126348		NR_030621	ENSG00000211575	MIR760	MIRN760|hsa-mir-760|mir-760	microRNA 760	ncRNA
41010	chr11	65424221	65425700	+	0	NA	non-coding (NR_028272, exon 1 of 1)	non-coding (NR_028272, exon 1 of 1)	2162	NR_131012	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
77643	chr15	85488921	85489380	+	0	NA	intron (NM_007200, intron 2 of 36)	MIR3|SINE|MIR	108547	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
109476	chr19	809271	809430	+	0	NA	intron (NM_031991, intron 12 of 13)	AluY|SINE|Alu	-4234	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	mir-3187	microRNA 3187	ncRNA
98524	chr17	47634951	47635450	+	0	NA	Intergenic	MIR3|SINE|MIR	-14719	NM_002265	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
215057	chr7	152757321	152757580	+	0	NA	Intergenic	L2c|LINE|L2	-2299	NM_001350946	57180		NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	actin related protein 3B	protein-coding
10281	chr1	64830301	64830950	+	0	NA	intron (NM_001366165, intron 11 of 11)	intron (NM_001366165, intron 11 of 11)	85550	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
102918	chr17	76570401	76571930	+	0	NA	intron (NM_006456, intron 5 of 8)	MLT1F1|LTR|ERVL-MaLR	9532	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
216312	chr8	12708471	12708900	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-10442	NR_049875	100847066		NR_049875	ENSG00000266318	MIR5692A1	-	microRNA 5692a-1	ncRNA
99933	chr17	57131021	57131500	+	0	NA	Intergenic	Intergenic	35771	NM_001370427	8165		NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding
46775	chr11	129922951	129923620	+	0	NA	exon (NM_001367893, exon 14 of 22)	exon (NM_001367893, exon 14 of 22)	24299	NM_001367899	56980		NM_020228	ENSG00000170325	PRDM10	BHD2|PFM7|TRIS	PR/SET domain 10	protein-coding
202070	chr6	154239401	154240200	+	0	NA	intron (NM_001130700, intron 5 of 11)	AluSz|SINE|Alu	90281	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
112571	chr19	6620721	6620800	+	0	NA	Intergenic	AluSx4|SINE|Alu	-29610	NM_001252	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
96059	chr17	39538671	39539150	+	0	NA	Intergenic	(ATAC)n|Simple_repeat|Simple_repeat	69010	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
180578	chr5	14812471	14812900	+	0	NA	intron (NM_054027, intron 1 of 11)	MER31B|LTR|ERV1	13327	NR_039780	100616271		NR_039780	ENSG00000264792	MIR4637	-	microRNA 4637	ncRNA
132523	chr2	106139701	106140450	+	0	NA	intron (NR_165308, intron 6 of 14)	intron (NR_165308, intron 6 of 14)	-1194	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
46614	chr11	128607921	128608180	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-20492	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
185432	chr5	131168121	131168380	+	0	NA	Intergenic	AluY|SINE|Alu	-2694	NR_121658	90624		NM_181705	ENSG00000186687	LYRM7	C5orf31|MC3DN8|MZM1L	LYR motif containing 7	protein-coding
125201	chr2	10270251	10270830	+	0	NA	Intergenic	Intergenic	-32364	NM_002149	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
189646	chr5	176194051	176194950	+	0	NA	intron (NR_036494, intron 1 of 25)	CpG	4795	NR_036494	643201		NR_036494	ENSG00000248596	CEP192P1	-	CEP192 pseudogene 1	pseudo
115254	chr19	14532251	14533000	+	0	NA	intron (NM_138501, intron 1 of 12)	intron (NM_138501, intron 1 of 12)	3031	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
200843	chr6	138164201	138164600	+	0	NA	intron (NM_020340, intron 1 of 33)	L2c|LINE|L2	2461	NM_020340	57221		NM_020340	ENSG00000112379	ARFGEF3	A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1	ARFGEF family member 3	protein-coding
91887	chr17	7266371	7266830	+	0	NA	Intergenic	AluYc|SINE|Alu	-3407	NM_001185022	1366		NM_001307	ENSG00000181885	CLDN7	CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1	claudin 7	protein-coding
23541	chr1	229229551	229230150	+	0	NA	Intergenic	Intergenic	-41212	NR_073545	5867		NM_004578	ENSG00000168118	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding
226185	chr9	64776071	64776450	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-30894	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
134343	chr2	136120951	136121250	+	0	NA	Intergenic	Intergenic	-2951	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
17225	chr1	156284501	156284700	+	0	NA	intron (NM_032323, intron 1 of 3)	intron (NM_032323, intron 1 of 3)	275	NM_032323	84283		NM_032323	ENSG00000163472	TMEM79	MATT	transmembrane protein 79	protein-coding
19358	chr1	173857451	173858100	+	0	NA	3' UTR (NM_001365212, exon 16 of 16)	3' UTR (NM_001365212, exon 16 of 16)	-5473	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
168430	chr3	142508601	142510280	+	0	NA	intron (NM_001184, intron 27 of 46)	AluJo|SINE|Alu	-61378	NM_001282859	54464		NM_019001	ENSG00000114127	XRN1	SEP1	5'-3' exoribonuclease 1	protein-coding
54084	chr12	76057021	76057480	+	0	NA	intron (NM_139207, intron 6 of 15)	AluJr|SINE|Alu	-25474	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
140476	chr2	233182251	233182550	+	0	NA	intron (NM_001017915, intron 18 of 26).2	intron (NM_001017915, intron 18 of 26).2	-69171	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
16376	chr1	154385051	154385930	+	0	NA	Intergenic	L2c|LINE|L2	-19853	NM_001206866	3570		NM_000565	ENSG00000160712	IL6R	CD126|HIES5|IL-1Ra|IL-6R|IL-6R-1|IL-6RA|IL6Q|IL6QTL|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding
191896	chr6	15363371	15364580	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	115120	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
204229	chr7	2537301	2537500	+	0	NA	TTS (NR_146879)	TTS (NR_146879)	10326	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
134227	chr2	134763451	134763570	+	0	NA	Intergenic	Intergenic	-44510	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
65278	chr14	50004471	50005530	+	0	NA	non-coding (NR_126496, exon 1 of 5)	non-coding (NR_126496, exon 1 of 5)	1519	NR_126496	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
42747	chr11	72714771	72715380	+	0	NA	intron (NM_001040118, intron 3 of 34)	MIRb|SINE|MIR	7265	NR_161388	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
206502	chr7	33407951	33408130	+	0	NA	intron (NM_001348037, intron 18 of 20)	L1PA3|LINE|L1	278476	NM_198428	27241		NM_014451	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding
43123	chr11	75245851	75246450	+	0	NA	Intergenic	Intergenic	5376	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
119967	chr19	41893451	41894950	+	0	NA	intron (NM_004706, intron 8 of 28)	intron (NM_004706, intron 8 of 28)	9757	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
68258	chr14	77028301	77029950	+	0	NA	promoter-TSS (NM_024496)	promoter-TSS (NM_024496)	-417	NM_024496	64207		NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1|NEDAMSS	interferon regulatory factor 2 binding protein like	protein-coding
134192	chr2	134368001	134368200	+	0	NA	intron (NM_001371457, intron 11 of 16)	intron (NM_001371457, intron 11 of 16)	114028	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
26265	chr10	14724951	14725250	+	0	NA	intron (NM_001282695, intron 1 of 5)	intron (NM_001282695, intron 1 of 5)	49797	NM_001282695	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
224738	chr9	21789421	21790180	+	0	NA	Intergenic	Intergenic	-12836	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
229509	chr9	122348371	122348730	+	0	NA	Intergenic	Intergenic	-21983	NM_001271368	5742		NM_000962	ENSG00000095303	PTGS1	COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS	prostaglandin-endoperoxide synthase 1	protein-coding
175016	chr4	52588251	52589390	+	0	NA	Intergenic	Intergenic	67719	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
24029	chr1	235276021	235276280	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-51066	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
223258	chr8	143702471	143703330	+	0	NA	Intergenic	Intergenic	-5151	NR_134306	101928160		NR_134306	ENSG00000181135	LOC101928160	-	uncharacterized LOC101928160	ncRNA
126711	chr2	30171121	30171400	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-16174	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
26290	chr10	14950501	14950780	+	0	NA	intron (NR_146960, intron 1 of 13)	intron (NR_146960, intron 1 of 13)	3456	NR_146961	64421		NM_022487	ENSG00000152457	DCLRE1C	A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C	DNA cross-link repair 1C	protein-coding
19196	chr1	172380501	172381330	+	0	NA	intron (NM_001350204, intron 18 of 20)	intron (NM_001350204, intron 18 of 20)	-39770	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
166385	chr3	113494151	113494530	+	0	NA	intron (NM_144718, intron 4 of 17)	MER112|DNA|hAT-Charlie	20504	NM_001331079	152185		NM_144718	ENSG00000163611	SPICE1	CCDC52|SPICE	spindle and centriole associated protein 1	protein-coding
191868	chr6	15293201	15293600	+	0	NA	intron (NM_001267040, intron 1 of 17)	AluSx1|SINE|Alu	44545	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
150778	chr21	43814301	43814500	+	0	NA	Intergenic	Intergenic	-1833	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
134049	chr2	131153821	131154980	+	0	NA	Intergenic	Intergenic	49553	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
204047	chr7	1946871	1947230	+	0	NA	intron (NM_001304524, intron 14 of 16)	MIR3|SINE|MIR	-6479	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
56335	chr12	112934071	112935430	+	0	NA	Intergenic	Intergenic	-3724	NM_006187	4940		NM_006187	ENSG00000111331	OAS3	p100|p100OAS	2'-5'-oligoadenylate synthetase 3	protein-coding
156993	chr22	42506451	42506780	+	0	NA	intron (NR_027786, intron 7 of 10)	MIRc|SINE|MIR	6036	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
198401	chr6	105810421	105810850	+	0	NA	Intergenic	Intergenic	-275701	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
116913	chr19	18788271	18789330	+	0	NA	intron (NM_000095, intron 6 of 18)	CpG-14094	2505	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
38998	chr11	47663301	47663530	+	0	NA	intron (NM_024783, intron 17 of 18)	MIRb|SINE|MIR	-20761	NM_001317232	23788		NM_014342	ENSG00000109919	MTCH2	HSPC032|MIMP|SLC25A50	mitochondrial carrier 2	protein-coding
139250	chr2	219386071	219386230	+	0	NA	intron (NR_134970, intron 5 of 12)	intron (NR_134970, intron 5 of 12)	1212	NM_001319118	23549		NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
147987	chr20	63008851	63009660	+	0	NA	promoter-TSS (NR_033370)	promoter-TSS (NR_033370)	-128	NR_033370	63930		NR_033370	ENSG00000272259	LINC01749	-	long intergenic non-protein coding RNA 1749	ncRNA
176615	chr4	99149671	99149830	+	0	NA	intron (NR_037884, intron 2 of 9)	intron (NR_037884, intron 2 of 9)	-5452	NM_001306172	127		NM_000670	ENSG00000198099	ADH4	ADH-2|HEL-S-4	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding
116282	chr19	17743851	17744350	+	0	NA	Intergenic	MER66B|LTR|ERV1	-3644	NM_001384396	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
154440	chr22	35355101	35355500	+	0	NA	Intergenic	Intergenic	-18501	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
84845	chr16	31128671	31129300	+	0	NA	intron (NM_032188, intron 6 of 10)	MIRb|SINE|MIR	6742	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
203921	chr7	1522471	1522630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8152	NM_002360	7975		NM_002360	ENSG00000198517	MAFK	NFE2U|P18	MAF bZIP transcription factor K	protein-coding
104244	chr17	80722451	80722950	+	0	NA	intron (NM_020761, intron 4 of 33)	L1MC4a|LINE|L1	82932	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
167096	chr3	127577101	127577500	+	0	NA	intron (NR_073377, intron 3 of 9)	intron (NR_073377, intron 3 of 9)	-1969	NR_106883	102466199		NR_106883	ENSG00000275067	MIR6825	hsa-mir-6825	microRNA 6825	ncRNA
71972	chr15	25436071	25436230	+	0	NA	intron (NM_001354507, intron 1 of 14)	intron (NM_001354507, intron 1 of 14)	2079	NM_001354526	7337		NM_000462	ENSG00000114062	UBE3A	ANCR|AS|E6-AP|EPVE6AP|HPVE6A|PIX1	ubiquitin protein ligase E3A	protein-coding
144441	chr20	35490661	35491900	+	0	NA	exon (NM_001318219, exon 20 of 33)	exon (NM_001318219, exon 20 of 33)	31297	NM_001318219	11190		NM_007186	ENSG00000126001	CEP250	C-NAP1|CEP2|CNAP1|CRDHL2	centrosomal protein 250	protein-coding
32509	chr10	102758521	102759080	+	0	NA	intron (NM_001083913, intron 1 of 3)	LTR13A|LTR|ERVK	14852	NM_001083913	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
43788	chr11	86284921	86285650	+	0	NA	Intergenic	AluJr|SINE|Alu	6952	NR_106813	102465452		NR_106813	ENSG00000283744	MIR6755	hsa-mir-6755	microRNA 6755	ncRNA
110326	chr19	1861971	1863100	+	0	NA	intron (NM_031918, intron 1 of 1)	CpG	1044	NM_031918	83855		NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	KLF transcription factor 16	protein-coding
234942	chrX	38799951	38800380	+	0	NA	Intergenic	L3b|LINE|CR1	-1267	NM_001098791	58526		NM_021242	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
183286	chr5	76540551	76540850	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-6709	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
20929	chr1	202198701	202198930	+	0	NA	intron (NM_001017403, intron 1 of 17)	intron (NM_001017403, intron 1 of 17)	4825	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
176488	chr4	90126921	90127600	+	0	NA	promoter-TSS (NM_001377987)	promoter-TSS (NM_001377987)	-134	NM_001377987	401145		NM_207491	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine rich protein 1	protein-coding
75309	chr15	65291521	65291930	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	-4326	NR_002756	26831		NR_002756	ENSG00000199568	RNU5A-1	RNU5|RNU5A|RNU5C|U5A|U5B1	RNA, U5A small nuclear 1	snRNA
71301	chr14	105312101	105312750	+	0	NA	intron (NM_001243127, intron 1 of 23)	intron (NM_001243127, intron 1 of 23)	-2323	NM_001100913	23241		NM_015197	ENSG00000179364	PACS2	DEE66|EIEE66|PACS-2|PACS1L	phosphofurin acidic cluster sorting protein 2	protein-coding
17672	chr1	157699421	157699850	+	0	NA	intron (NM_052939, intron 3 of 14)	intron (NM_052939, intron 3 of 14)	1134	NR_135217	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
49442	chr12	24838221	24838750	+	0	NA	intron (NM_001178091, intron 6 of 9)	intron (NM_001178091, intron 6 of 9)	63737	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
165137	chr3	71771151	71771450	+	0	NA	TTS (NM_021935)	TTS (NM_021935)	13848	NM_001126128	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
193849	chr6	31536651	31537330	+	0	NA	promoter-TSS (NR_003140)	promoter-TSS (NR_003140)	-541	NR_003140	692233		NR_003140	ENSG00000201785	SNORD117	U83	small nucleolar RNA, C/D box 117	snoRNA
89589	chr16	89277751	89278300	+	0	NA	intron (NM_013275, intron 9 of 12)	intron (NM_013275, intron 9 of 12)	-18103	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
75107	chr15	64476551	64477050	+	0	NA	intron (NM_015042, intron 1 of 9)	intron (NM_015042, intron 1 of 9)	16222	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
92623	chr17	10107621	10107880	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-71093	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
34947	chr11	452301	453100	+	0	NA	intron (NR_138046, intron 1 of 12)	intron (NR_138046, intron 1 of 12)	2421	NM_001329545	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
129035	chr2	64991501	64991700	+	0	NA	intron (NM_003038, intron 1 of 7)	AluY|SINE|Alu	2201	NM_003038	6509		NM_003038	ENSG00000115902	SLC1A4	ASCT1|SATT|SPATCCM	solute carrier family 1 member 4	protein-coding
140449	chr2	233156201	233156800	+	0	NA	intron (NM_001017915, intron 9 of 26).2	AluSx1|SINE|Alu	-95071	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
68941	chr14	91392001	91392200	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	25720	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
162238	chr3	47159101	47159780	+	0	NA	intron (NR_146158, intron 1 of 21)	L2a|LINE|L2	4673	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
151984	chr22	19166821	19167630	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-4481	NR_103767	100652736		NR_103767		LINC01311	-	long intergenic non-protein coding RNA 1311	ncRNA
119355	chr19	39995351	39995680	+	0	NA	Intergenic	AluSg|SINE|Alu	-1545	NM_178544	339327		NM_178544	ENSG00000187187	ZNF546	ZNF49	zinc finger protein 546	protein-coding
27447	chr10	31924171	31924330	+	0	NA	intron (NM_018287, intron 1 of 19)	L1M5|LINE|L1	4581	NM_001270698	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
128691	chr2	61530551	61531080	+	0	NA	intron (NM_003400, intron 2 of 24)	intron (NM_003400, intron 2 of 24)	7541	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
102692	chr17	76133771	76134130	+	0	NA	Intergenic	AluJb|SINE|Alu	-6606	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
187477	chr5	142144971	142145630	+	0	NA	intron (NM_030571, intron 7 of 7)	intron (NM_030571, intron 7 of 7)	36521	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
174268	chr4	38139121	38139580	+	0	NA	TTS (NM_001253914)	TTS (NM_001253914)	19396	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
145529	chr20	44116471	44117000	+	0	NA	intron (NM_020433, intron 3 of 5)	MIRb|SINE|MIR	70453	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
164190	chr3	56817551	56818050	+	0	NA	intron (NM_001289698, intron 2 of 10)	MIRb|SINE|MIR	-15851	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
189679	chr5	176397801	176398200	+	0	NA	non-coding (NR_157088, exon 4 of 7)	non-coding (NR_157088, exon 4 of 7)	-9073	NM_001256539	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
179303	chr4	177367371	177367550	+	0	NA	Intergenic	L1MDb|LINE|L1	57586	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
69007	chr14	91497921	91498230	+	0	NA	intron (NR_158976, intron 2 of 16)	AluSz|SINE|Alu	12235	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
183764	chr5	81735651	81736380	+	0	NA	intron (NM_001256733, intron 1 of 15)	intron (NM_001256733, intron 1 of 15)	15238	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
38064	chr11	35182301	35182980	+	0	NA	intron (NM_001202557, intron 3 of 8)	LTR101_Mam|LTR|ERVL	19690	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
79203	chr16	345071	345230	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	7573	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
114462	chr19	12726771	12727330	+	0	NA	Intergenic	L3|LINE|CR1	-3118	NM_001382241	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
210374	chr7	99618571	99618730	+	0	NA	5' UTR (NM_001350986, exon 2 of 7)	5' UTR (NM_001350986, exon 2 of 7)	1704	NM_001350984	221785		NM_145115	ENSG00000197037	ZSCAN25	ZNF498	zinc finger and SCAN domain containing 25	protein-coding
144712	chr20	36525071	36525700	+	0	NA	intron (NM_001365621, intron 11 of 12)	intron (NM_001365621, intron 11 of 12)	-16134	NM_006097	10398		NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MMIHS4|MRLC1|MYRL2	myosin light chain 9	protein-coding
15240	chr1	149604071	149604230	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2862	NR_111950	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
158914	chr3	10008621	10009600	+	0	NA	intron (NR_148535, intron 1 of 2)	intron (NR_148535, intron 1 of 2)	2008	NR_148535	55831		NM_018447	ENSG00000125037	EMC3	POB|TMEM111	ER membrane protein complex subunit 3	protein-coding
118994	chr19	38886571	38886900	+	0	NA	intron (NR_034146, intron 6 of 13)	AluSg|SINE|Alu	7420	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
154054	chr22	30597401	30598030	+	0	NA	intron (NM_001282327, intron 2 of 16)	LTR12C|LTR|ERV1	-5805	NM_014303	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
12363	chr1	101242751	101242850	+	0	NA	Intergenic	Intergenic	5781	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
10806	chr1	77761351	77761450	+	0	NA	Intergenic	Intergenic	-1548	NM_015017	23032		NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
30047	chr10	73813551	73814380	+	0	NA	non-coding (NR_160047, exon 22 of 22)	non-coding (NR_160047, exon 22 of 22)	-2145	NR_160744	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
239447	chrY	56710721	56711380	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-243205	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
68778	chr14	91138421	91139150	+	0	NA	intron (NM_001286471, intron 1 of 13)	THE1D|LTR|ERVL-MaLR	12359	NR_003709	100124539		NR_003709	ENSG00000221102	SNORA11B	-	small nucleolar RNA, H/ACA box 11B	snoRNA
218144	chr8	41787421	41787880	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	9972	NM_000037	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
109449	chr19	742701	742900	+	0	NA	intron (NM_002579, intron 8 of 8)	L1MB5|LINE|L1	-8312	NM_173481	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
130041	chr2	74421251	74422700	+	0	NA	promoter-TSS (NM_001316766)	promoter-TSS (NM_001316766)	245	NM_032118	84058		NM_032118	ENSG00000005448	WDR54	-	WD repeat domain 54	protein-coding
60560	chr13	41492321	41493850	+	0	NA	Intergenic	Intergenic	35535	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
112820	chr19	7517401	7517600	+	0	NA	intron (NM_018083, intron 1 of 1)	FLAM_C|SINE|Alu	1397	NM_018083	140467		NM_018083	ENSG00000198816	ZNF358	ZFEND	zinc finger protein 358	protein-coding
63631	chr14	20682301	20683400	+	0	NA	Intergenic	CpG	-1327	NM_001145	283		NM_001145	ENSG00000214274	ANG	ALS9|HEL168|RAA1|RNASE4|RNASE5	angiogenin	protein-coding
167404	chr3	128995021	128995580	+	0	NA	intron (NM_001348521, intron 1 of 15)	intron (NM_001348521, intron 1 of 15)	-1224	NM_020741	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
47303	chr12	1688271	1688430	+	0	NA	Intergenic	FRAM|SINE|Alu	-2720	NM_001375363	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
126442	chr2	28013521	28013780	+	0	NA	intron (NM_199193, intron 5 of 13)	intron (NM_199193, intron 5 of 13)	17283	NR_036230	100422965		NR_036230	ENSG00000265321	MIR4263	-	microRNA 4263	ncRNA
227372	chr9	89492971	89493630	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	2356	NM_001371198	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
114575	chr19	12918771	12920350	+	0	NA	promoter-TSS (NR_049880)	promoter-TSS (NR_049880)	-267	NM_001105578	256126		NM_001105578	ENSG00000161860	SYCE2	CESC1	synaptonemal complex central element protein 2	protein-coding
2103	chr1	8016521	8016780	+	0	NA	intron (NM_018948, intron 1 of 3)	intron (NM_018948, intron 1 of 3)	9659	NM_018948	54206		NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding
55547	chr12	105679751	105680050	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-24303	NR_110109	101929110		NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility 18	ncRNA
83091	chr16	22442221	22442500	+	0	NA	intron (NR_027154, intron 1 of 28)	AluSx|SINE|Alu	-4645	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
153105	chr22	23541351	23541450	+	0	NA	intron (NR_109832, intron 2 of 3)	HERVK-int|LTR|ERVK	3298	NR_109832	101978785		NR_109832		PCAT14	-	prostate cancer associated transcript 14	ncRNA
155846	chr22	39452001	39452200	+	0	NA	Intergenic	AluSc|SINE|Alu	-4912	NM_002409	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
60595	chr13	41980201	41980400	+	0	NA	intron (NR_039974, intron 3 of 3)	AluSx1|SINE|Alu	19131	NR_039974	100507240		NR_039974	ENSG00000278338	VWA8-AS1	-	VWA8 antisense RNA 1 (head to head)	ncRNA
206935	chr7	38234851	38235150	+	0	NA	Intergenic	AluSx3|SINE|Alu	38647	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
169252	chr3	157157551	157157650	+	0	NA	intron (NM_001308185, intron 3 of 10)	intron (NM_001308185, intron 3 of 10)	2547	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
183663	chr5	80396651	80396830	+	0	NA	Intergenic	L1PA5|LINE|L1	-11324	NR_146174	9765		NM_014733	ENSG00000039319	ZFYVE16	PPP1R69	zinc finger FYVE-type containing 16	protein-coding
237649	chrX	124249401	124249700	+	0	NA	Intergenic	L1M4|LINE|L1	-83110	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
107647	chr18	48975451	48976550	+	0	NA	Intergenic	CpG	-25289	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
178795	chr4	153492671	153493130	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	26540	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
193876	chr6	31578251	31578350	+	0	NA	TTS (NM_000594).6	TTS (NM_000594).6	2735	NM_000594	7124		NM_000594	ENSG00000232810	TNF	DIF|TNF-alpha|TNFA|TNFSF2|TNLG1F	tumor necrosis factor	protein-coding
95512	chr17	36531771	36532850	+	0	NA	intron (NM_025109, intron 3 of 21)	intron (NM_025109, intron 3 of 21)	-2452	NM_001346755	284098		NM_178517	ENSG00000277161	PIGW	Gwt1|HPMRS5	phosphatidylinositol glycan anchor biosynthesis class W	protein-coding
165269	chr3	75434511	75436550	+	0	NA	promoter-TSS (NR_024241)	promoter-TSS (NR_024241)	222	NR_151707	107986100		NR_151705	ENSG00000272690	LINC02018	-	long intergenic non-protein coding RNA 2018	ncRNA
14314	chr1	143838871	143839580	+	0	NA	Intergenic	Intergenic	-35518	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
137723	chr2	197706511	197706880	+	0	NA	exon (NM_138395, exon 1 of 1)	exon (NM_138395, exon 1 of 1)	1326	NM_138395	92935		NM_138395	ENSG00000247626	MARS2	COXPD25|MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
32421	chr10	102477621	102477880	+	0	NA	TTS (NM_024789)	TTS (NM_024789)	16355	NM_024789	79847		NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding
194923	chr6	34891021	34891850	+	0	NA	intron (NM_015245, intron 1 of 23)	intron (NM_015245, intron 1 of 23)	2180	NM_015245	23294		NM_015245	ENSG00000064999	ANKS1A	ANKS1	ankyrin repeat and sterile alpha motif domain containing 1A	protein-coding
82036	chr16	12089351	12090050	+	0	NA	intron (NM_032167, intron 11 of 20)	L2b|LINE|L2	112966	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
46255	chr11	124749601	124749800	+	0	NA	intron (NM_014312, intron 4 of 6)	intron (NM_014312, intron 4 of 6)	2555	NM_001329920	23584		NM_014312	ENSG00000019102	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
200221	chr6	131449921	131450000	+	0	NA	Intergenic	Intergenic	-123266	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
72211	chr15	30175971	30176130	+	0	NA	Intergenic	Intergenic	-19986	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
117771	chr19	29697671	29698400	+	0	NA	TTS (NM_001282931)	TTS (NM_001282931)	17021	NM_001282929	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
31932	chr10	100564521	100564980	+	0	NA	Intergenic	Intergenic	28807	NM_017902	55662		NM_017902	ENSG00000166135	HIF1AN	FIH1	hypoxia inducible factor 1 subunit alpha inhibitor	protein-coding
59344	chr13	24598101	24598880	+	0	NA	TTS (NR_002815)	TTS (NR_002815)	18282	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
41641	chr11	66481851	66481950	+	0	NA	intron (NM_001256670, intron 1 of 16)	AluSx1|SINE|Alu	1466	NM_130443	10072		NM_005700	ENSG00000254986	DPP3	DPPIII	dipeptidyl peptidase 3	protein-coding
45649	chr11	119004671	119004830	+	0	NA	intron (NR_104051, intron 4 of 10)	AluJb|SINE|Alu	-1157	NR_003040	649946		NR_003040		RPL23AP64	RPL23A_25_1182	ribosomal protein L23a pseudogene 64	pseudo
65758	chr14	54203601	54203800	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-193168	NM_001330173	1033		NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
44676	chr11	110525501	110525900	+	0	NA	Intergenic	Intergenic	95752	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
62696	chr13	102797421	102797830	+	0	NA	intron (NM_024089, intron 1 of 9)	AluJr|SINE|Alu	1351	NM_024089	79070		NM_024089	ENSG00000134901	POGLUT2	EP58|ERp58|KDEL1|KDELC1	protein O-glucosyltransferase 2	protein-coding
86430	chr16	66882501	66882700	+	0	NA	intron (NM_001329931, intron 1 of 1)	intron (NM_001329931, intron 1 of 1)	2085	NM_020786	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
7928	chr1	37495421	37495880	+	0	NA	intron (NR_073091, intron 7 of 7)	AluJb|SINE|Alu	5344	NR_049844	100847010		NR_049844	ENSG00000263675	MIR5581	-	microRNA 5581	ncRNA
57416	chr12	121837751	121838500	+	0	NA	Intergenic	Intergenic	20734	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
93824	chr17	20840671	20841430	+	0	NA	Intergenic	CpG	-27477	NR_160710	440416		NR_104185	ENSG00000233098	CCDC144NL-AS1	-	CCDC144NL antisense RNA 1	ncRNA
199115	chr6	111687521	111688100	+	0	NA	intron (NM_001370529, intron 10 of 11)	MIR|SINE|MIR	71321	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
95388	chr17	35895671	35896800	+	0	NA	Intergenic	Intergenic	14788	NR_126038	100533789		NR_126038		LRRC37A8P	-	leucine rich repeat containing 37 member A8, pseudogene	pseudo
167172	chr3	128075121	128076300	+	0	NA	promoter-TSS (NR_046645)	promoter-TSS (NR_046645)	-100	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
56213	chr12	111589551	111589850	+	0	NA	intron (NM_001310121, intron 1 of 25)	AluSx|SINE|Alu	9615	NM_001372574	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
180986	chr5	35801601	35801800	+	0	NA	intron (NM_024867, intron 34 of 36)	intron (NM_024867, intron 34 of 36)	-55191	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
134076	chr2	131517471	131517980	+	0	NA	intron (NR_026922, intron 13 of 17)	intron (NR_026922, intron 13 of 17)	-9950	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
28148	chr10	43453371	43454030	+	0	NA	intron (NM_001355444, intron 1 of 3)	Tigger6a|DNA|TcMar-Tigger	16589	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
146058	chr20	47416401	47417000	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-4556	NR_146496	102723442		NR_146494		LINC01754	-	long intergenic non-protein coding RNA 1754	ncRNA
153564	chr22	26655701	26656230	+	0	NA	Intergenic	AluJo|SINE|Alu	-1517	NR_033321	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
87101	chr16	68529821	68530580	+	0	NA	Intergenic	CpG	-9013	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
36418	chr11	4099601	4099930	+	0	NA	intron (NM_001033, intron 1 of 18)	intron (NM_001033, intron 1 of 18)	4966	NM_001033	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
25516	chr10	7271021	7271280	+	0	NA	intron (NM_001029880, intron 7 of 20)	AluSz|SINE|Alu	-84366	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
142445	chr20	3979401	3979680	+	0	NA	intron (NM_001134338, intron 1 of 6)	AluSq2|SINE|Alu	36018	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
76228	chr15	73935571	73936130	+	0	NA	intron (NM_005576, intron 1 of 6)	intron (NM_005576, intron 1 of 6)	-7602	NR_040068	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
137624	chr2	197325971	197326130	+	0	NA	Intergenic	Intergenic	-15270	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
138432	chr2	205948021	205948380	+	0	NA	Intergenic	Intergenic	137974	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
174296	chr4	38482801	38483280	+	0	NA	intron (NR_110951, intron 2 of 7)	intron (NR_110951, intron 2 of 7)	-26727	NR_149076	106144599		NR_149076	ENSG00000249667	LINC01259	TCONS_00007515	long intergenic non-protein coding RNA 1259	ncRNA
220608	chr8	100919971	100920430	+	0	NA	3' UTR (NM_001135701, exon 6 of 6)	3' UTR (NM_001135701, exon 6 of 6)	30371	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
225516	chr9	35719301	35719500	+	0	NA	intron (NM_006289, intron 15 of 56)	intron (NM_006289, intron 15 of 56)	-8659	NR_106911	102465513		NR_106911	ENSG00000284195	MIR6852	hsa-mir-6852	microRNA 6852	ncRNA
4738	chr1	23421971	23423080	+	0	NA	intron (NM_003196, intron 1 of 10).2	intron (NM_003196, intron 1 of 10).2	2223	NM_003196	6920		NM_003196	ENSG00000204219	TCEA3	TFIIS|TFIIS.H	transcription elongation factor A3	protein-coding
28841	chr10	62457551	62457950	+	0	NA	intron (NM_199450, intron 3 of 4)	HAL1ME|LINE|L1	-82623	NR_104162	283045		NR_104162	ENSG00000288011	LOC283045	-	uncharacterized LOC283045	ncRNA
73682	chr15	44788751	44789280	+	0	NA	Intergenic	Intergenic	52487	NM_001301145	140691		NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
127973	chr2	46719401	46719600	+	0	NA	intron (NM_144949, intron 1 of 1)	L4_C_Mam|LINE|RTE-X	20205	NM_144949	9655		NM_014011	ENSG00000171150	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
87808	chr16	75557821	75558280	+	0	NA	Intergenic	Intergenic	-1764	NM_001077416	79583		NM_001077416	ENSG00000205084	TMEM231	ALYE870|JBTS20|MKS11|PRO1886	transmembrane protein 231	protein-coding
118129	chr19	34859871	34860900	+	0	NA	Intergenic	L1PA4|LINE|L1	-27516	NR_033982	400685		NR_033982	ENSG00000267767	LINC01801	-	long intergenic non-protein coding RNA 1801	ncRNA
209424	chr7	76357951	76360300	+	0	NA	promoter-TSS (NM_012479)	promoter-TSS (NM_012479)	-134	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
192088	chr6	16683621	16684430	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	76159	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
61494	chr13	52615821	52616100	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-1565	NM_001011724	144983		NM_001011724	ENSG00000139675	HNRNPA1L2	-	heterogeneous nuclear ribonucleoprotein A1 like 2	protein-coding
225831	chr9	37920321	37920700	+	0	NA	intron (NM_003028, intron 5 of 5)	MLT1J1|LTR|ERVL-MaLR	-16157	NR_024872	92014		NM_033412	ENSG00000122696	SLC25A51	CG7943|MCART1	solute carrier family 25 member 51	protein-coding
220958	chr8	109561551	109561900	+	0	NA	intron (NM_004215, intron 6 of 6)	intron (NM_004215, intron 6 of 6)	21099	NM_001278938	9166		NM_004215	ENSG00000147654	EBAG9	EB9|PDAF	estrogen receptor binding site associated antigen 9	protein-coding
179009	chr4	163754951	163755280	+	0	NA	intron (NM_001166373, intron 3 of 7)	MER20|DNA|hAT-Charlie	-141581	NM_017923	55016		NM_017923	ENSG00000145416	MARCHF1	MARCH-I|MARCH1|RNF171	membrane associated ring-CH-type finger 1	protein-coding
224390	chr9	10836651	10836750	+	0	NA	Intergenic	LTR12C|LTR|ERV1	223494	NR_110696	101929428		NR_110696	ENSG00000226717	PTPRD-DT	PTPRD-AS2	PTPRD divergent transcript	ncRNA
171941	chr4	882951	883530	+	0	NA	intron (NM_001318134, intron 10 of 24)	intron (NM_001318134, intron 10 of 24)	49076	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
24399	chr1	243104651	243105650	+	0	NA	Intergenic	L1MA9|LINE|L1	-3406	NR_029401	731275		NR_029401	ENSG00000291217	LINC01347	-	long intergenic non-protein coding RNA 1347	ncRNA
22085	chr1	211416151	211417500	+	0	NA	intron (NR_026761, intron 4 of 5)	CpG	34070	NR_026761	84791		NM_032705	ENSG00000153363	LINC00467	ASAP|C1orf97	long intergenic non-protein coding RNA 467	ncRNA
216737	chr8	22452051	22452150	+	0	NA	intron (NM_005605, intron 1 of 13)	AluJr|SINE|Alu	11022	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
55289	chr12	103373071	103373430	+	0	NA	intron (NR_103526, intron 3 of 10)	intron (NR_103526, intron 3 of 10)	122718	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
39155	chr11	57315501	57315900	+	0	NA	intron (NM_033396, intron 4 of 11)	L2a|LINE|L2	9252	NM_033396	85456		NM_033396	ENSG00000149115	TNKS1BP1	CNOT12|TAB182	tankyrase 1 binding protein 1	protein-coding
51281	chr12	51214951	51215130	+	0	NA	intron (NM_001368008, intron 1 of 2)	L2a|LINE|L2	2265	NM_001368008	5463		NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding
176153	chr4	83214871	83215030	+	0	NA	Intergenic	MIRb|SINE|MIR	69848	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
80138	chr16	2084101	2084300	+	0	NA	intron (NM_001370404, intron 32 of 40)	intron (NM_001370404, intron 32 of 40)	6084	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
121771	chr19	47766971	47767130	+	0	NA	intron (NR_132382, intron 1 of 2)	intron (NR_132382, intron 1 of 2)	1790	NR_132382	106144593		NR_132382	ENSG00000269656	NOP53-AS1	GLTSCR2-AS1	NOP53 antisense RNA 1	ncRNA
215281	chr7	157136501	157136780	+	0	NA	Intergenic	L1MA9|LINE|L1	-2286	NM_014671	9690		NM_014671	ENSG00000009335	UBE3C	HECTH2|NDSMBA|NEDSMBA|RAUL	ubiquitin protein ligase E3C	protein-coding
167229	chr3	128477301	128477500	+	0	NA	Intergenic	Intergenic	-10152	NM_153330	165721		NM_153330	ENSG00000179407	DNAJB8	CT156|DJ6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding
135763	chr2	169600151	169600250	+	0	NA	intron (NM_004792, intron 1 of 13)	AluJb|SINE|Alu	15849	NM_004792	9360		NM_004792	ENSG00000138398	PPIG	CARS-Cyp|CYP|SCAF10|SRCyp	peptidylprolyl isomerase G	protein-coding
177743	chr4	122508021	122508480	+	0	NA	Intergenic	Intergenic	-51525	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
200433	chr6	135018121	135018380	+	0	NA	intron (NM_001363686, intron 4 of 18)	intron (NM_001363686, intron 4 of 18)	36572	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
95716	chr17	38563271	38565350	+	0	NA	exon (NM_025248, exon 4 of 19)	exon (NM_025248, exon 4 of 19)	41642	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
219198	chr8	66616551	66616650	+	0	NA	Intergenic	LTR40c|LTR|ERVL	-3382	NM_001080416	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
185842	chr5	132472421	132474500	+	0	NA	intron (NR_161242, intron 3 of 3)	MIRc|SINE|MIR	17313	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
62859	chr13	110524521	110524980	+	0	NA	intron (NM_017817, intron 1 of 1)	intron (NM_017817, intron 1 of 1)	-16571	NR_046583	100874203		NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
63339	chr13	114021671	114022580	+	0	NA	intron (NM_001320822, intron 8 of 23).2	intron (NM_001320822, intron 8 of 23).2	-48049	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
97993	chr17	45286921	45287380	+	0	NA	intron (NM_003954, intron 4 of 15)	intron (NM_003954, intron 4 of 15)	-25056	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
84510	chr16	30508721	30509280	+	0	NA	intron (NM_002209, intron 21 of 30)	AluSx|SINE|Alu	5081	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
168375	chr3	141908651	141908950	+	0	NA	intron (NM_001679, intron 3 of 6)	L2c|LINE|L2	32157	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
49940	chr12	39895671	39896230	+	0	NA	intron (NM_052885, intron 4 of 9)	intron (NM_052885, intron 4 of 9)	210131	NM_052885	114134		NM_052885	ENSG00000151229	SLC2A13	HMIT	solute carrier family 2 member 13	protein-coding
80831	chr16	3485901	3486630	+	0	NA	promoter-TSS (NR_106741)	promoter-TSS (NR_106741)	-796	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
55938	chr12	109944551	109945050	+	0	NA	intron (NM_057170, intron 14 of 17)	intron (NM_057170, intron 14 of 17)	44223	NM_032300	84260		NM_032300	ENSG00000139437	TCHP	TpMs	trichoplein keratin filament binding	protein-coding
54043	chr12	75812171	75812730	+	0	NA	Intergenic	Intergenic	219326	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
97822	chr17	44888021	44888900	+	0	NA	intron (NM_001142605, intron 1 of 26)	L2a|LINE|L2	10908	NM_001258353	9343		NM_004247	ENSG00000108883	EFTUD2	MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD	elongation factor Tu GTP binding domain containing 2	protein-coding
168840	chr3	152260501	152261150	+	0	NA	intron (NM_001376839, intron 2 of 10)	intron (NM_001376839, intron 2 of 10)	-8104	NM_001376823	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
195151	chr6	35724421	35725000	+	0	NA	intron (NM_001145775, intron 1 of 11)	AluJb|SINE|Alu	3873	NM_001145775	2289		NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FKBP prolyl isomerase 5	protein-coding
116105	chr19	17295451	17295930	+	0	NA	intron (NM_024527, intron 2 of 4)	AluSz|SINE|Alu	-7175	NM_001382342	64981		NM_023937	ENSG00000130312	MRPL34	L34mt|bL34m	mitochondrial ribosomal protein L34	protein-coding
71470	chr14	105896771	105897130	+	0	NA	Intergenic	L1ME3B|LINE|L1	-21029	NR_026800	9834		NM_014151	ENSG00000226777	FAM30A	C14orf110|HSPC053|KIAA0125	family with sequence similarity 30 member A	ncRNA
19013	chr1	169624101	169624300	+	0	NA	intron (NM_003005, intron 1 of 16)	intron (NM_003005, intron 1 of 16)	5924	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
85143	chr16	46385251	46385350	+	0	NA	Intergenic	Intergenic	183797	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
204068	chr7	2035421	2035980	+	0	NA	intron (NM_001304524, intron 10 of 16)	intron (NM_001304524, intron 10 of 16)	53352	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
214894	chr7	151431371	151432150	+	0	NA	intron (NM_001308292, intron 2 of 2)	intron (NM_001308292, intron 2 of 2)	1879	NR_037468	100500835		NR_037468	ENSG00000265810	MIR3907	-	microRNA 3907	ncRNA
34538	chr10	132930721	132930980	+	0	NA	intron (NM_001200049, intron 8 of 57)	intron (NM_001200049, intron 8 of 57)	11720	NM_001200049	54777		NM_017609	ENSG00000171811	CFAP46	C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	cilia and flagella associated protein 46	protein-coding
191847	chr6	15247901	15250080	+	0	NA	promoter-TSS (NR_120502)	promoter-TSS (NR_120502)	135	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
118272	chr19	35271771	35271930	+	0	NA	intron (NM_001321150, intron 5 of 7)	intron (NM_001321150, intron 5 of 7)	2888	NM_207291	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
222349	chr8	133552121	133552900	+	0	NA	intron (NM_173344, intron 1 of 9)	intron (NM_173344, intron 1 of 9)	19377	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
177644	chr4	121220401	121220980	+	0	NA	intron (NM_001244764, intron 1 of 12)	Tigger13a|DNA|TcMar-Tigger	-4063	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
135664	chr2	168467121	168467380	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	10978	NM_001256126	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
187499	chr5	142326201	142327050	+	0	NA	intron (NR_120664, intron 1 of 3)	intron (NR_120664, intron 1 of 3)	1332	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
25712	chr10	8996701	8996900	+	0	NA	Intergenic	Intergenic	98811	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
215000	chr7	152344351	152344880	+	0	NA	intron (NM_170606, intron 2 of 58)	L1MC1|LINE|L1	91388	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
105501	chr17	83096221	83096950	+	0	NA	Intergenic	Intergenic	15439	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
232672	chr9	136511071	136511300	+	0	NA	exon (NM_017617, exon 16 of 34)	exon (NM_017617, exon 16 of 34)	8441	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
160145	chr3	20068801	20069000	+	0	NA	intron (NM_003884, intron 1 of 17)	intron (NM_003884, intron 1 of 17)	28454	NM_003884	8850		NM_003884	ENSG00000114166	KAT2B	CAF|P/CAF|PCAF	lysine acetyltransferase 2B	protein-coding
27826	chr10	38092671	38092830	+	0	NA	Intergenic	AluSg|SINE|Alu	-1586	NM_001324252	7587		NM_003421	ENSG00000075407	ZNF37A	KOX21|ZNF37	zinc finger protein 37A	protein-coding
131921	chr2	98869421	98870050	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	66490	NM_207362	343990		NM_207362	ENSG00000196872	CRACDL	C2orf55|KIAA1211L	CRACD like	protein-coding
225712	chr9	36739701	36739900	+	0	NA	Intergenic	Intergenic	83799	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA
57175	chr12	121426721	121427180	+	0	NA	Intergenic	Intergenic	17402	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
30110	chr10	73993171	73993580	+	0	NA	Intergenic	Intergenic	-4741	NM_014000	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
189697	chr5	176447501	176449230	+	0	NA	promoter-TSS (NM_014613)	promoter-TSS (NM_014613)	-20	NM_014613	23197		NM_014613	ENSG00000113194	FAF2	ETEA|UBXD8|UBXN3B	Fas associated factor family member 2	protein-coding
171675	chr3	197731101	197731300	+	0	NA	intron (NM_001145642, intron 1 of 20)	SVA_D|Retroposon|SVA	5704	NM_014687	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
11984	chr1	94602101	94602780	+	0	NA	Intergenic	Intergenic	58738	NR_162147	113219466		NR_162147		MIR12133	-	microRNA 12133	ncRNA
178478	chr4	148440621	148440880	+	0	NA	intron (NM_001354819, intron 1 of 7)	intron (NM_001354819, intron 1 of 7)	1664	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
50943	chr12	49369401	49370200	+	0	NA	intron (NM_001293286, intron 1 of 12)	intron (NM_001293286, intron 1 of 12)	2338	NM_001293286	65244		NM_023071	ENSG00000123352	SPATS2	Nbla00526|P59SCR|SCR59|SPATA10	spermatogenesis associated serine rich 2	protein-coding
119948	chr19	41874171	41874330	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3029	NM_021601	973		NM_001783	ENSG00000105369	CD79A	IGA|IGAlpha|MB-1|MB1	CD79a molecule	protein-coding
89247	chr16	88647671	88647830	+	0	NA	intron (NM_000101, intron 2 of 5)	intron (NM_000101, intron 2 of 5)	3303	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
77684	chr15	85624301	85624850	+	0	NA	intron (NM_001270546, intron 1 of 28)	intron (NM_001270546, intron 1 of 28)	4625	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
224529	chr9	19183771	19185050	+	0	NA	Intergenic	Intergenic	-46283	NM_001330640	55667		NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding
34769	chr11	203101	203500	+	0	NA	3' UTR (NM_001098787, exon 4 of 4)	3' UTR (NM_001098787, exon 4 of 4)	4122	NM_001098787	51272		NM_016465	ENSG00000177951	BET1L	BET1L1|GOLIM3|GS15|HSPC197	Bet1 golgi vesicular membrane trafficking protein like	protein-coding
111973	chr19	4864901	4865830	+	0	NA	intron (NM_005817, intron 1 of 7)	AluSx1|SINE|Alu	2302	NM_001164194	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
220345	chr8	99340751	99341000	+	0	NA	intron (NM_152564, intron 19 of 61)	intron (NM_152564, intron 19 of 61)	195855	NR_030329	693184		NR_030329	ENSG00000207804	MIR599	MIRN599|hsa-mir-599	microRNA 599	ncRNA
116564	chr19	18232851	18234050	+	0	NA	intron (NM_000923, intron 1 of 15)	intron (NM_000923, intron 1 of 15)	929	NM_001330172	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
67926	chr14	74652421	74652880	+	0	NA	Intergenic	Intergenic	-40413	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
12001	chr1	95077001	95077200	+	0	NA	Intergenic	AluJb|SINE|Alu	-4149	NR_131032	199857		NM_144988	ENSG00000172339	ALG14	CMS15|IDDEBF|MEPCA	ALG14 UDP-N-acetylglucosaminyltransferase subunit	protein-coding
220870	chr8	103414501	103416230	+	0	NA	promoter-TSS (NR_102338)	promoter-TSS (NR_102338)	-21	NM_015420	25879		NM_015420	ENSG00000164934	DCAF13	GM83|HSPC064|Sof1|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
204096	chr7	2115801	2116200	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-26948	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
226202	chr9	65382901	65383550	+	0	NA	Intergenic	SST1|Satellite|centr	-98016	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
191525	chr6	11374451	11374750	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	7748	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
115311	chr19	14778421	14778630	+	0	NA	promoter-TSS (NM_013447)	promoter-TSS (NM_013447)	35	NM_013447	30817		NM_013447	ENSG00000127507	ADGRE2	CD312|CD97|EMR2|VBU	adhesion G protein-coupled receptor E2	protein-coding
155391	chr22	38319051	38319350	+	0	NA	intron (NM_001289912, intron 5 of 14)	MER102b|DNA|hAT-Charlie	-1116	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
184418	chr5	98922821	98923530	+	0	NA	intron (NR_157078, intron 2 of 36)	intron (NR_157078, intron 2 of 36)	-5387	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
222043	chr8	130246121	130246780	+	0	NA	intron (NM_001362924, intron 3 of 30)	THE1D|LTR|ERVL-MaLR	50083	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
147680	chr20	62308351	62309000	+	0	NA	TTS (NM_005560)	TTS (NM_005560)	5678	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
16866	chr1	155751251	155751550	+	0	NA	TTS (NR_024117).2	TTS (NR_024117).2	5632	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
162149	chr3	46963971	46964630	+	0	NA	intron (NM_144716, intron 2 of 7)	SVA_D|Retroposon|SVA	12201	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
154830	chr22	37063101	37063300	+	0	NA	3' UTR (NM_024681, exon 8 of 8)	3' UTR (NM_024681, exon 8 of 8)	11464	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
144831	chr20	36856671	36857730	+	0	NA	intron (NM_080627, intron 1 of 14)	intron (NM_080627, intron 1 of 14)	2673	NM_199181	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
157681	chr22	46293321	46294130	+	0	NA	3' UTR (NM_017931, exon 14 of 14)	3' UTR (NM_017931, exon 14 of 14)	2935	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
139207	chr2	219277471	219278110	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-1576	NM_001039550	3300		NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HMNR5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
209209	chr7	75434151	75434530	+	0	NA	intron (NM_001099415, intron 7 of 14)	AluSx|SINE|Alu	24018	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
145390	chr20	41339651	41341380	+	0	NA	promoter-TSS (NM_001301860)	promoter-TSS (NM_001301860)	-306	NR_126051	64900		NM_022896	ENSG00000132793	LPIN3	LIPN3L|SMP2|dJ620E11.2	lipin 3	protein-coding
181005	chr5	35832621	35832880	+	0	NA	Intergenic	Intergenic	-24141	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
144516	chr20	35700551	35700950	+	0	NA	TTS (NR_040724)	TTS (NR_040724)	1345	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
184685	chr5	108642301	108642650	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	85786	NR_046368	100652853		NR_046368		LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
33186	chr10	113170201	113170400	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	41029	NM_001349870	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
46038	chr11	122674851	122676000	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	19703	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
24691	chr1	247213071	247213430	+	0	NA	Intergenic	MER21B|LTR|ERVL	-11190	NR_037480	100500849		NR_037480	ENSG00000283881	MIR3916	mir-3916	microRNA 3916	ncRNA
162092	chr3	46896851	46897180	+	0	NA	intron (NM_001184744, intron 4 of 14)	MIR3|SINE|MIR	14766	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
147569	chr20	60294651	60294950	+	0	NA	intron (NR_046099, intron 3 of 4)	intron (NR_046099, intron 3 of 4)	-13674	NR_030376	693231		NR_030376	ENSG00000207802	MIR646	MIRN646|hsa-mir-646	microRNA 646	ncRNA
193439	chr6	30484721	30484980	+	0	NA	Intergenic	AluY|SINE|Alu	-4659	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
203558	chr7	894251	894830	+	0	NA	intron (NM_015949, intron 8 of 8)	intron (NM_015949, intron 8 of 8)	17986	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
110293	chr19	1830951	1831600	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	9186	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
150213	chr21	39441351	39442000	+	0	NA	intron (NM_001384299, intron 2 of 6)	intron (NM_001384299, intron 2 of 6)	4103	NM_001384295	150082		NM_152505	ENSG00000157578	LCA5L	C21orf13	lebercilin LCA5 like	protein-coding
239004	chrX	156024001	156024200	+	0	NA	Intergenic	Intergenic	4083	NR_110561	727856		NR_110561		DDX11L16	-	DEAD/H-box helicase 11 like 16 (pseudogene)	pseudo
78317	chr15	90949571	90950280	+	0	NA	intron (NM_001323619, intron 16 of 20)	intron (NM_001323619, intron 16 of 20)	-4951	NM_001017919	91433		NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
170021	chr3	180952421	180953200	+	0	NA	intron (NM_001013438, intron 8 of 15)	intron (NM_001013438, intron 8 of 15)	36708	NM_001190233	131118		NM_145261	ENSG00000205981	DNAJC19	PAM18|TIM14|TIMM14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding
161451	chr3	42118771	42118930	+	0	NA	intron (NM_001042646, intron 1 of 15)	intron (NM_001042646, intron 1 of 15)	27493	NM_001349246	22906		NM_014965	ENSG00000182606	TRAK1	DEE68|EIEE68|MILT1|OIP106	trafficking kinesin protein 1	protein-coding
17136	chr1	156181871	156182030	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-12154	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
219166	chr8	66507451	66507950	+	0	NA	intron (NM_152765, intron 3 of 5)	intron (NM_152765, intron 3 of 5)	14134	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
150982	chr21	44335501	44336400	+	0	NA	intron (NM_001271440, intron 2 of 6)	intron (NM_001271440, intron 2 of 6)	2388	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
167047	chr3	126703401	126705030	+	0	NA	promoter-TSS (NM_001320610)	promoter-TSS (NM_001320610)	-25	NM_001320610	84303		NM_032343	ENSG00000159685	CHCHD6	CHCM1|MICOS25|Mic25|PPP1R23	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding
124544	chr2	360251	360350	+	0	NA	Intergenic	L1MB3|LINE|L1	44016	NR_146953	105373350		NR_146953		LINC01865	-	long intergenic non-protein coding RNA 1865	ncRNA
47061	chr12	551551	552730	+	0	NA	exon (NM_173593, exon 12 of 20)	exon (NM_173593, exon 12 of 20)	34346	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
119660	chr19	40828151	40828400	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-17175	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
239331	chrY	18994601	18994800	+	0	NA	intron (NR_125733, intron 2 of 4)	intron (NR_125733, intron 2 of 4)	81303	NR_125736	83869		NM_031932	ENSG00000176728	TTTY14	CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14	testis expressed transcript, Y-linked 14	ncRNA
25224	chr10	5815301	5816030	+	0	NA	Intergenic	AluSx4|SINE|Alu	-2116	NM_001115156	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
122324	chr19	49140751	49141050	+	0	NA	intron (NR_103842, intron 17 of 28)	AluY|SINE|Alu	14496	NM_002152	3270		NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding
45341	chr11	118227751	118228930	+	0	NA	non-coding (NR_104404, exon 3 of 3)	non-coding (NR_104404, exon 3 of 3)	-3329	NM_001286570	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
230480	chr9	128222201	128222400	+	0	NA	exon (NM_001005336, exon 7 of 23)	exon (NM_001005336, exon 7 of 23)	-18078	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
41349	chr11	65957751	65958050	+	0	NA	intron (NM_152762, intron 5 of 7)	intron (NM_152762, intron 5 of 7)	-3834	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
81850	chr16	11612071	11612750	+	0	NA	Intergenic	Intergenic	-24944	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
66500	chr14	61701701	61702630	+	0	NA	intron (NM_001243084, intron 1 of 14)	AluSx|SINE|Alu	4543	NM_001243084	3091		NM_001530	ENSG00000100644	HIF1A	HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78	hypoxia inducible factor 1 subunit alpha	protein-coding
211372	chr7	105004951	105005050	+	0	NA	Intergenic	Intergenic	9141	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
119589	chr19	40719001	40719900	+	0	NA	intron (NM_025194, intron 1 of 6)	MIR|SINE|MIR	2338	NM_025194	80271		NM_025194	ENSG00000086544	ITPKC	IP3-3KC|IP3KC	inositol-trisphosphate 3-kinase C	protein-coding
228175	chr9	97388301	97389100	+	0	NA	Intergenic	Intergenic	7991	NR_026847	286359		NM_182600		LOC286359	-	uncharacterized LOC286359	ncRNA
91688	chr17	6070051	6071050	+	0	NA	promoter-TSS (NM_015253)	promoter-TSS (NM_015253)	-64	NM_015253	23302		NM_015253	ENSG00000179314	WSCD1	-	WSC domain containing 1	protein-coding
22959	chr1	226061701	226063800	+	0	NA	promoter-TSS (NM_002107)	promoter-TSS (NM_002107)	23	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
213392	chr7	135985401	135985600	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	-8141	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
132090	chr2	101309801	101310250	+	0	NA	TTS (NR_049881)	TTS (NR_049881)	575	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
206706	chr7	36515301	36515500	+	0	NA	intron (NM_001177506, intron 20 of 21)	(AC)n|Simple_repeat|Simple_repeat	84720	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
109839	chr19	1202121	1202380	+	0	NA	Intergenic	AluSx|SINE|Alu	-3528	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
90653	chr17	1675121	1676630	+	0	NA	intron (NM_006445, intron 18 of 42)	intron (NM_006445, intron 18 of 42)	8992	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
41147	chr11	65593421	65594430	+	0	NA	intron (NM_033347, intron 1 of 2)	intron (NM_033347, intron 1 of 2)	1875	NM_033347	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
172270	chr4	1426251	1426350	+	0	NA	Intergenic	Intergenic	-19858	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
72842	chr15	40160351	40162600	+	0	NA	intron (NM_001211, intron 1 of 22)	CpG	406	NM_001211	701		NM_001211	ENSG00000156970	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
5348	chr1	25269901	25270300	+	0	NA	intron (NR_135788, intron 1 of 3)	intron (NR_135788, intron 1 of 3)	-2175	NR_135777	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
126832	chr2	30766121	30766380	+	0	NA	intron (NM_144575, intron 5 of 22)	intron (NM_144575, intron 5 of 22)	41196	NM_144575	92291		NM_144575	ENSG00000162949	CAPN13	-	calpain 13	protein-coding
174029	chr4	26822421	26822880	+	0	NA	Intergenic	Intergenic	37594	NR_134675	105374546		NR_134673		STIM2-AS1	-	STIM2 antisense RNA 1	ncRNA
81418	chr16	8676051	8676800	+	0	NA	intron (NM_020686, intron 1 of 15)	intron (NM_020686, intron 1 of 15)	1808	NM_020686	18		NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
6756	chr1	30731801	30732880	+	0	NA	TTS (NM_006762)	TTS (NM_006762)	6892	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
98216	chr17	46141851	46142050	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluSx3|SINE|Alu	50832	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
159642	chr3	15310601	15312030	+	0	NA	intron (NM_001018009, intron 2 of 8)	AluSx|SINE|Alu	21271	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
78119	chr15	90336851	90337150	+	0	NA	Intergenic	LTR16D|LTR|ERVL	12447	NR_028287	23766		NM_032568		GABARAPL3	ATG8D	GABA type A receptor associated protein like 3 (pseudogene)	pseudo
199754	chr6	125825101	125825500	+	0	NA	intron (NM_001199621, intron 2 of 14)	AluJr4|SINE|Alu	-6442	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
204404	chr7	3065051	3066480	+	0	NA	Intergenic	Intergenic	-21898	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
58789	chr12	132761501	132762850	+	0	NA	promoter-TSS (NM_015114)	promoter-TSS (NM_015114)	-343	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
155436	chr22	38460551	38460880	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5516	NM_152868	3761		NM_004981	ENSG00000168135	KCNJ4	HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3	potassium inwardly rectifying channel subfamily J member 4	protein-coding
20205	chr1	193121601	193123400	+	0	NA	intron (NM_024529, intron 1 of 16)	intron (NM_024529, intron 1 of 16)	469	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
74578	chr15	60550921	60552380	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	40876	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
107940	chr18	58042571	58043100	+	0	NA	Intergenic	Intergenic	-1391	NM_001144967	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
222376	chr8	133654301	133654680	+	0	NA	Intergenic	Intergenic	29576	NR_134462	105375773		NR_134462	ENSG00000289906	LINC03024	-	long intergenic non-protein coding RNA 3024	ncRNA
107696	chr18	49489571	49489730	+	0	NA	promoter-TSS (NR_003701)	promoter-TSS (NR_003701)	-326	NR_003701	100124516		NR_003701		SNORD58C	U58	small nucleolar RNA, C/D box 58C	snoRNA
115817	chr19	16458301	16458800	+	0	NA	intron (NM_021235, intron 1 of 22)	intron (NM_021235, intron 1 of 22)	13420	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
155897	chr22	39533801	39534130	+	0	NA	Intergenic	Intergenic	-1217	NM_194326	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
31430	chr10	95789901	95790300	+	0	NA	intron (NR_038444, intron 4 of 5)	Tigger2b_Pri|DNA|TcMar-Tigger	33937	NM_001164182	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
61267	chr13	50080171	50081300	+	0	NA	intron (NR_152566, intron 1 of 13)	intron (NR_152566, intron 1 of 13)	1306	NR_152568	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
207190	chr7	43624851	43626800	+	0	NA	3' UTR (NM_004760, exon 7 of 7)	3' UTR (NM_004760, exon 7 of 7)	42717	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
199903	chr6	127863171	127863330	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-8062	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
43316	chr11	76238521	76239200	+	0	NA	Intergenic	Intergenic	-32358	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
140839	chr2	236969001	236969400	+	0	NA	Intergenic	Intergenic	86967	NR_135202	93463		NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA
71063	chr14	104818701	104819400	+	0	NA	Intergenic	AluSg|SINE|Alu	-2151	NR_024396	196872		NM_152646	ENSG00000258701	VESTAR	LINC00638	VEGFC mRNA stability associated lncRNA	ncRNA
96985	chr17	42272001	42272950	+	0	NA	intron (NM_012448, intron 1 of 18)	intron (NM_012448, intron 1 of 18)	3916	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
166559	chr3	115661851	115661950	+	0	NA	intron (NM_002045, intron 1 of 2)	intron (NM_002045, intron 1 of 2)	38390	NM_001130064	2596		NM_002045	ENSG00000172020	GAP43	B-50|GAP-43|PP46	growth associated protein 43	protein-coding
141106	chr2	238493101	238493300	+	0	NA	Intergenic	L1MDa|LINE|L1	62299	NR_037809	151171		NR_037809	ENSG00000225493	LINC01107	-	long intergenic non-protein coding RNA 1107	ncRNA
5930	chr1	26858721	26859180	+	0	NA	Intergenic	Intergenic	-4199	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
142769	chr20	10672401	10673200	+	0	NA	exon (NM_000214, exon 2 of 26)	exon (NM_000214, exon 2 of 26)	1199	NM_000214	182		NM_000214	ENSG00000101384	JAG1	AGS|AGS1|AHD|AWS|CD339|CMT2HH|DCHE|HJ1|JAGL1	jagged canonical Notch ligand 1	protein-coding
13674	chr1	116569551	116570600	+	0	NA	intron (NR_026665, intron 1 of 5)	intron (NR_026665, intron 1 of 5)	951	NR_026665	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
28212	chr10	44995451	44996250	+	0	NA	TTS (NM_032023)	TTS (NM_032023)	4953	NR_126421	220979		NM_145022	ENSG00000165511	ZNF22-AS1	C10orf25	ZNF22 antisense RNA 1	ncRNA
83629	chr16	28276921	28278380	+	0	NA	Intergenic	AluJb|SINE|Alu	-14875	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
152499	chr22	20929051	20929350	+	0	NA	intron (NR_156180, intron 1 of 3)	AluY|SINE|Alu	11793	NM_005207	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
112419	chr19	6221171	6221330	+	0	NA	intron (NM_005934, intron 6 of 11)	intron (NM_005934, intron 6 of 11)	58725	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
199653	chr6	122407801	122408000	+	0	NA	intron (NM_001135564, intron 1 of 11)	MLT1A|LTR|ERVL-MaLR	8248	NM_001243094	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
13715	chr1	116775151	116775630	+	0	NA	Intergenic	Intergenic	20960	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
144337	chr20	34991801	34992000	+	0	NA	intron (NM_020884, intron 24 of 44)	L1ME4b|LINE|L1	-1428	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
158563	chr3	4504201	4505450	+	0	NA	intron (NM_002222, intron 2 of 57)	intron (NM_002222, intron 2 of 57)	11477	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
105386	chr17	82715071	82715230	+	0	NA	intron (NR_136400, intron 1 of 1)	intron (NR_136400, intron 1 of 1)	1103	NR_136400	101929552		NR_136400	ENSG00000263063	LOC101929552	-	uncharacterized LOC101929552	ncRNA
86932	chr16	68097351	68097680	+	0	NA	intron (NM_173165, intron 1 of 9)	L2c|LINE|L2	12145	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
87607	chr16	74363921	74364430	+	0	NA	intron (NR_026950, intron 1 of 14)	L2c|LINE|L2	4080	NR_026950	283922		NR_026950	ENSG00000290890	PDPR2P	-	pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene	pseudo
239496	chrY	56755951	56756350	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-198105	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
51806	chr12	53392301	53392500	+	0	NA	intron (NM_138473, intron 3 of 5)	AluYa5|SINE|Alu	11756	NM_003109	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
30451	chr10	79084101	79084580	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	15374	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
88695	chr16	85812901	85813300	+	0	NA	Intergenic	AluJr|SINE|Alu	13405	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
107668	chr18	49055801	49056200	+	0	NA	intron (NM_001374431, intron 16 of 16)	intron (NM_001374431, intron 16 of 16)	-6232	NR_039898	100616420		NR_039898	ENSG00000263849	MIR4744	-	microRNA 4744	ncRNA
142835	chr20	17536771	17537400	+	0	NA	intron (NM_001278608, intron 3 of 9)	intron (NM_001278608, intron 3 of 9)	-5706	NM_001195	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
44132	chr11	96112251	96112550	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-188293	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
113993	chr19	10834871	10837280	+	0	NA	promoter-TSS (NR_104015)	promoter-TSS (NR_104015)	137	NM_006858	11018		NM_006858	ENSG00000099203	TMED1	IL1RL1LG|Il1rl1l|Tp24|p24g1	transmembrane p24 trafficking protein 1	protein-coding
110688	chr19	2280821	2281800	+	0	NA	intron (NM_198532, intron 1 of 3)	intron (NM_198532, intron 1 of 3)	865	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
79522	chr16	806771	808650	+	0	NA	intron (NM_001013638, intron 2 of 2)	CpG-8900	2267	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
153913	chr22	30315851	30315950	+	0	NA	intron (NM_001204240, intron 1 of 8)	intron (NM_001204240, intron 1 of 8)	11041	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
182681	chr5	67476701	67476900	+	0	NA	Intergenic	Intergenic	169989	NR_147169	105379006		NR_147169	ENSG00000249736	LINC02242	-	long intergenic non-protein coding RNA 2242	ncRNA
191341	chr6	7125451	7125550	+	0	NA	intron (NM_001003698, intron 1 of 11)	intron (NM_001003698, intron 1 of 11)	17539	NM_001003700	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
40380	chr11	63998521	63999900	+	0	NA	TTS (NM_017670)	TTS (NM_017670)	13357	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
138842	chr2	216503921	216504580	+	0	NA	TTS (NM_000998)	TTS (NM_000998)	5406	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
153282	chr22	24161621	24162180	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-19587	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
173695	chr4	15649571	15650730	+	0	NA	intron (NM_012161, intron 1 of 10)	MER20|DNA|hAT-Charlie	5207	NM_012161	26234		NM_012161	ENSG00000118564	FBXL5	FBL4|FBL5|FLR1	F-box and leucine rich repeat protein 5	protein-coding
53403	chr12	64716201	64717000	+	0	NA	3' UTR (NM_002076, exon 14 of 14)	3' UTR (NM_002076, exon 14 of 14)	42806	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
220521	chr8	100680701	100681350	+	0	NA	Intergenic	Intergenic	21999	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
188763	chr5	157596501	157597330	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-21140	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
110415	chr19	1959421	1960750	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	-5536	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
150495	chr21	42782571	42783080	+	0	NA	Intergenic	Intergenic	-2831	NR_135517	101928311		NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
140765	chr2	234555601	234555800	+	0	NA	Intergenic	L2b|LINE|L2	-58619	NM_001282431	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
17909	chr1	160204151	160204530	+	0	NA	intron (NR_123725, intron 4 of 4)	intron (NR_123725, intron 4 of 4)	-1044	NM_001297577	8682		NM_003768	ENSG00000162734	PEA15	HMAT1|HUMMAT1H|MAT1|MAT1H|PEA-15|PED|PED-PEA15|PED/PEA15	proliferation and apoptosis adaptor protein 15	protein-coding
88660	chr16	85654371	85654730	+	0	NA	intron (NM_001278184, intron 3 of 14)	intron (NM_001278184, intron 3 of 14)	34404	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
165028	chr3	71405151	71405450	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-100529	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
93741	chr17	19812471	19812630	+	0	NA	intron (NM_014683, intron 13 of 26)	MER47B|DNA|TcMar-Tigger	55386	NM_014683	9706		NM_014683	ENSG00000083290	ULK2	ATG1B|Unc51.2	unc-51 like autophagy activating kinase 2	protein-coding
71609	chr14	106657221	106657980	+	0	NA	Intergenic	Intergenic	175161	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
239468	chrY	56727621	56728580	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-226155	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
75601	chr15	67106371	67107800	+	0	NA	intron (NM_005902, intron 1 of 8)	L2a|LINE|L2	-18631	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
225441	chr9	35097651	35097750	+	0	NA	Intergenic	L2a|LINE|L2	-1099	NM_152850	84720		NM_032634	ENSG00000165282	PIGO	HPMRS2	phosphatidylinositol glycan anchor biosynthesis class O	protein-coding
13927	chr1	120142821	120143600	+	0	NA	Intergenic	Intergenic	33310	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
90334	chr17	1176701	1177380	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	2941	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
68035	chr14	75179071	75179630	+	0	NA	Intergenic	MER31A|LTR|ERV1	-2738	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
188664	chr5	157252501	157254300	+	0	NA	3' UTR (NM_005546, exon 17 of 17)	3' UTR (NM_005546, exon 17 of 17)	-12723	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
123460	chr19	54152271	54152650	+	0	NA	exon (NM_014516, exon 15 of 18).8	exon (NM_014516, exon 15 of 18).8	7261	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
7631	chr1	35562871	35563030	+	0	NA	intron (NM_014284, intron 4 of 6)	MIRb|SINE|MIR	5151	NM_014284	23154		NM_014284	ENSG00000020129	NCDN	NEDIES	neurochondrin	protein-coding
172543	chr4	2387021	2387480	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	-22436	NM_001172659	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
27051	chr10	27135821	27136080	+	0	NA	intron (NM_001253866, intron 4 of 17)	L2c|LINE|L2	18434	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
12873	chr1	110198951	110199250	+	0	NA	3' UTR (NM_001010898, exon 12 of 12)	3' UTR (NM_001010898, exon 12 of 12)	10887	NR_046546	100873974		NR_046546		KCNC4-DT	KCNC4-AS1|LINC02586	KCNC4 divergent transcript	ncRNA
204172	chr7	2427401	2427600	+	0	NA	intron (NM_018641, intron 1 of 1)	AluJb|SINE|Alu	23889	NM_001243794	55501		NM_018641	ENSG00000136213	CHST12	C4S-2|C4ST-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
59383	chr13	24812071	24812330	+	0	NA	intron (NM_031277, intron 15 of 35)	L1PA3|LINE|L1	48031	NM_031277	56163		NM_031277	ENSG00000132972	RNF17	Mmip-2|SPATA23|TDRD4	ring finger protein 17	protein-coding
174247	chr4	37974821	37975580	+	0	NA	intron (NM_015173, intron 2 of 19)	LTR13|LTR|ERVK	14802	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
109765	chr19	1125221	1125480	+	0	NA	intron (NM_001100122, intron 2 of 28).2	AluSx1|SINE|Alu	6871	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
162176	chr3	46992971	46993130	+	0	NA	intron (NM_015175, intron 10 of 53)	intron (NM_015175, intron 10 of 53)	5060	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
28724	chr10	61903201	61904080	+	0	NA	intron (NM_032199, intron 2 of 9)	intron (NM_032199, intron 2 of 9)	1941	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
33208	chr10	113960171	113961000	+	0	NA	Intergenic	Intergenic	-83281	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
63137	chr13	113492351	113492650	+	0	NA	intron (NM_001349745, intron 1 of 10)	L1MD2|LINE|L1	1479	NR_146221	55002		NM_017905	ENSG00000150403	TMCO3	C13orf11	transmembrane and coiled-coil domains 3	protein-coding
205216	chr7	7934151	7934480	+	0	NA	Intergenic	L1MDa|LINE|L1	34437	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
123791	chr19	55146201	55147500	+	0	NA	intron (NM_001291774, intron 4 of 13)	CpG-15152	2356	NM_001291774	7138		NM_003283	ENSG00000105048	TNNT1	ANM|NEM5|STNT|TNT|TNTS	troponin T1, slow skeletal type	protein-coding
42969	chr11	73769401	73770000	+	0	NA	Intergenic	AluY|SINE|Alu	-8626	NM_001243718	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
93978	chr17	21972201	21972480	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-230655	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
213143	chr7	131502971	131503800	+	0	NA	3' UTR (NM_001018111, exon 9 of 9)	3' UTR (NM_001018111, exon 9 of 9)	53243	NM_001018111	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
145738	chr20	45083871	45084030	+	0	NA	Intergenic	L1ME3A|LINE|L1	17177	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
174323	chr4	38666051	38666410	+	0	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-1602	NR_026804	79667		NM_024614		KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA
143002	chr20	20369301	20369650	+	0	NA	exon (NM_002196, exon 1 of 1)	exon (NM_002196, exon 1 of 1)	1371	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
4779	chr1	23552871	23553230	+	0	NA	Intergenic	AluY|SINE|Alu	6451	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
73055	chr15	40897901	40898500	+	0	NA	intron (NM_020857, intron 2 of 4)	AluYc|SINE|Alu	3750	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
88593	chr16	85583101	85583850	+	0	NA	Intergenic	Intergenic	-27934	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
5986	chr1	26964151	26964780	+	0	NA	Intergenic	AluSz|SINE|Alu	-3997	NM_152365	126695		NM_152365	ENSG00000175707	KDF1	C1orf172|ECTD12	keratinocyte differentiation factor 1	protein-coding
91454	chr17	4806621	4808350	+	0	NA	intron (NM_002663, intron 1 of 24)	CpG	333	NM_002663	5338		NM_002663	ENSG00000129219	PLD2	PLD1C	phospholipase D2	protein-coding
210679	chr7	100549771	100550830	+	0	NA	intron (NM_006076, intron 2 of 11)	AluSc|SINE|Alu	11097	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
123873	chr19	55278071	55278230	+	0	NA	intron (NM_001130106, intron 3 of 8)	AluSx|SINE|Alu	1706	NM_001297600	23640		NM_012267	ENSG00000133265	HSPBP1	FES1	HSPA (Hsp70) binding protein 1	protein-coding
22652	chr1	223755651	223756150	+	0	NA	intron (NM_001748, intron 10 of 20)	intron (NM_001748, intron 10 of 20)	43361	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
96140	chr17	39666551	39666650	+	0	NA	TTS (NM_003673)	TTS (NM_003673)	1251	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
193125	chr6	28985621	28986450	+	0	NA	intron (NR_145490, intron 1 of 4)	intron (NR_145490, intron 1 of 4)	187	NR_145490	414761		NR_135289		HCG15	HCG16	HLA complex group 15	ncRNA
189374	chr5	172701001	172701250	+	0	NA	Intergenic	Intergenic	38960	NR_049799	100847029		NR_049799	ENSG00000265160	MIR5003	-	microRNA 5003	ncRNA
44606	chr11	108538001	108538450	+	0	NA	promoter-TSS (NM_001144765)	promoter-TSS (NM_001144765)	-48	NM_001144764	23086		NM_015065	ENSG00000110723	EXPH5	EBS4|SLAC2-B|SLAC2B	exophilin 5	protein-coding
24789	chr1	248926571	248926730	+	0	NA	Intergenic	MIRb|SINE|MIR	20407	NM_001017434	267002		NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
81285	chr16	4666401	4666600	+	0	NA	intron (NM_001142291, intron 7 of 15)	intron (NM_001142291, intron 7 of 15)	-4818	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
124926	chr2	8543021	8544290	+	0	NA	Intergenic	Intergenic	40137	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
1364	chr1	2505901	2507500	+	0	NA	Intergenic	Intergenic	19896	NM_018216	55229		NM_018216	ENSG00000157881	PANK4	CTRCT49	pantothenate kinase 4 (inactive)	protein-coding
6812	chr1	30919171	30919730	+	0	NA	Intergenic	LTR26|LTR|ERV1	-10692	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
72768	chr15	39774301	39775040	+	0	NA	intron (NM_001324338, intron 2 of 11)	LTR67B|LTR|ERVL	8171	NM_001324338	161835		NM_152597	ENSG00000150667	FSIP1	HSD10	fibrous sheath interacting protein 1	protein-coding
195885	chr6	41684951	41685250	+	0	NA	intron (NM_001271944, intron 8 of 8)	intron (NM_001271944, intron 8 of 8)	46632	NM_005586	4188		NM_005586	ENSG00000112559	MDFI	I-MF|I-mfa	MyoD family inhibitor	protein-coding
126884	chr2	32189421	32190100	+	0	NA	intron (NM_001193514, intron 5 of 12)	AluJr4|SINE|Alu	23896	NM_017964	55676		NM_017964	ENSG00000152683	SLC30A6	MST103|MSTP103|ZNT6	solute carrier family 30 member 6	protein-coding
117071	chr19	19061621	19062130	+	0	NA	Intergenic	Intergenic	-2119	NM_001321544	284439		NM_178526	ENSG00000181035	SLC25A42	MECREN	solute carrier family 25 member 42	protein-coding
51366	chr12	51823001	51823280	+	0	NA	intron (NM_001384995, intron 1 of 1)	MIR3|SINE|MIR	8777	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
201158	chr6	142932771	142933900	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	11841	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
207570	chr7	44916301	44916730	+	0	NA	Intergenic	AluSc8|SINE|Alu	-30985	NM_033224	5814		NM_033224	ENSG00000146676	PURB	PURBETA	purine rich element binding protein B	protein-coding
72539	chr15	34331571	34332880	+	0	NA	intron (NM_133647, intron 1 of 24)	intron (NM_133647, intron 1 of 24)	4619	NM_133647	9990		NM_005135	ENSG00000140199	SLC12A6	ACCPN|CMT2II|KCC3|KCC3A|KCC3B	solute carrier family 12 member 6	protein-coding
31331	chr10	92880351	92880530	+	0	NA	intron (NM_001319200, intron 1 of 17)	intron (NM_001319200, intron 1 of 17)	31920	NM_001319195	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
35339	chr11	1114571	1115150	+	0	NA	Intergenic	Intergenic	39985	NM_002457	4583		NM_002457	ENSG00000198788	MUC2	MLP|MUC-2|SMUC	mucin 2, oligomeric mucus/gel-forming	protein-coding
137023	chr2	190693401	190693800	+	0	NA	TTS (NM_001321312)	TTS (NM_001321312)	34442	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
50835	chr12	49112001	49112330	+	0	NA	Intergenic	AluJo|SINE|Alu	-1265	NM_001300751	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
91232	chr17	3936851	3936950	+	0	NA	intron (NM_174953, intron 15 of 22)	intron (NM_174953, intron 15 of 22)	-20435	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
174538	chr4	40196411	40197300	+	0	NA	promoter-TSS (NM_004310)	promoter-TSS (NM_004310)	-52	NM_001278361	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
203414	chr7	240821	241080	+	0	NA	intron (NM_020223, intron 3 of 9)	intron (NM_020223, intron 3 of 9)	48379	NM_020223	56975		NM_020223	ENSG00000177706	FAM20C	DMP-4|DMP4|G-CK|GEF-CK|RNS	FAM20C golgi associated secretory pathway kinase	protein-coding
213290	chr7	134986231	134987300	+	0	NA	5' UTR (NM_001367817, exon 1 of 5)	5' UTR (NM_001367817, exon 1 of 5)	257	NM_001345851	340351		NM_178563	ENSG00000146856	AGBL3	CCP3	AGBL carboxypeptidase 3	protein-coding
43028	chr11	74006751	74007400	+	0	NA	5' UTR (NM_003356, exon 2 of 7)	5' UTR (NM_003356, exon 2 of 7)	2010	NM_003356	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
179709	chr4	190182071	190182250	+	0	NA	non-coding (NR_137167, exon 3 of 6).2	non-coding (NR_137167, exon 3 of 6).2	8386	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
136474	chr2	177211471	177213950	+	0	NA	promoter-TSS (NM_001330247)	promoter-TSS (NM_001330247)	16	NM_001330249	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
237344	chrX	118532501	118532750	+	0	NA	intron (NM_144658, intron 1 of 52)	AluY|SINE|Alu	36716	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
54212	chr12	79918621	79918880	+	0	NA	intron (NM_001143885, intron 2 of 25)	L2c|LINE|L2	-4839	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
1893	chr1	6444901	6445680	+	0	NA	intron (NM_031475, intron 6 of 12)	intron (NM_031475, intron 6 of 12)	-15394	NR_036218	100422975		NR_036218	ENSG00000265392	MIR4252	-	microRNA 4252	ncRNA
162568	chr3	48659371	48660130	+	0	NA	exon (NM_001407, exon 1 of 35)	exon (NM_001407, exon 1 of 35)	3136	NM_001407	1951		NM_001407	ENSG00000008300	CELSR3	ADGRC3|CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1	cadherin EGF LAG seven-pass G-type receptor 3	protein-coding
192788	chr6	26552851	26554400	+	0	NA	Intergenic	Intergenic	15259	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
78157	chr15	90415601	90415800	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	27458	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
87878	chr16	78122851	78123230	+	0	NA	intron (NM_130791, intron 4 of 5)	intron (NM_130791, intron 4 of 5)	23386	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
57733	chr12	122891871	122892030	+	0	NA	intron (NM_024667, intron 1 of 3)	intron (NM_024667, intron 1 of 3)	4174	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
172372	chr4	1752551	1753550	+	0	NA	Intergenic	Intergenic	31529	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
92656	chr17	10617871	10618680	+	0	NA	intron (NR_125367, intron 10 of 10)	intron (NR_125367, intron 10 of 10)	39034	NM_002470	4621		NM_002470	ENSG00000109063	MYH3	CPSFS1A|CPSFS1B|CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE	myosin heavy chain 3	protein-coding
169307	chr3	158723021	158723750	+	0	NA	intron (NM_206963, intron 1 of 5)	intron (NM_206963, intron 1 of 5)	9072	NM_206963	5918		NM_002888	ENSG00000118849	RARRES1	LXNL|PERG-1|TIG1	retinoic acid receptor responder 1	protein-coding
129869	chr2	73075201	73075400	+	0	NA	3' UTR (NM_015470, exon 5 of 5)	3' UTR (NM_015470, exon 5 of 5)	-3588	NM_001371740	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
95798	chr17	38723921	38724880	+	0	NA	intron (NM_005937, intron 18 of 19)	intron (NM_005937, intron 18 of 19)	4709	NR_039879	100616153		NR_039879	ENSG00000273627	MIR4726	-	microRNA 4726	ncRNA
19242	chr1	172658001	172658200	+	0	NA	promoter-TSS (NM_001302746)	promoter-TSS (NM_001302746)	-908	NM_001302746	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
133483	chr2	119928271	119928680	+	0	NA	intron (NM_002830, intron 13 of 26)	intron (NM_002830, intron 13 of 26)	-84602	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
231840	chr9	132669401	132671850	+	0	NA	promoter-TSS (NM_001322341)	promoter-TSS (NM_001322341)	161	NM_012204	9329		NM_012204	ENSG00000125484	GTF3C4	KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA	general transcription factor IIIC subunit 4	protein-coding
197976	chr6	90028051	90028550	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	133831	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
231375	chr9	130683821	130684380	+	0	NA	Intergenic	(AGTCAGAG)n|Simple_repeat|Simple_repeat	-9660	NM_001282709	23404		NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|SHRF|hRrp4p|p7	exosome component 2	protein-coding
147148	chr20	56391621	56394100	+	0	NA	promoter-TSS (NM_003600)	promoter-TSS (NM_003600)	215	NM_001324	1477		NM_001324	ENSG00000101138	CSTF1	CstF-50|CstFp50	cleavage stimulation factor subunit 1	protein-coding
184554	chr5	102760821	102761300	+	0	NA	intron (NM_001364588, intron 1 of 24)	MamRTE1|LINE|RTE-BovB	5755	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
21236	chr1	204218601	204218800	+	0	NA	TTS (NM_014935)	TTS (NM_014935)	-4712	NM_198447	127845		NM_198447	ENSG00000174567	GOLT1A	CGI-141|GOT1|GOT1B|HMFN1187|YMR292W|hGOT1b	golgi transport 1A	protein-coding
106862	chr18	24080421	24081150	+	0	NA	exon (NM_153211, exon 5 of 14)	exon (NM_153211, exon 5 of 14)	-32542	NM_001292030	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
87171	chr16	69332771	69332930	+	0	NA	exon (NM_001379264, exon 4 of 6)	exon (NM_001379264, exon 4 of 6)	-2262	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
134776	chr2	147451221	147451480	+	0	NA	Intergenic	Intergenic	-393167	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
202123	chr6	154794571	154794830	+	0	NA	intron (NM_001286199, intron 6 of 20)	MER44A|DNA|TcMar-Tigger	-58660	NR_036100	100422821		NR_036100	ENSG00000264814	MIR1273C	-	microRNA 1273c	ncRNA
146758	chr20	50845571	50845730	+	0	NA	intron (NM_198799, intron 4 of 4)	intron (NM_198799, intron 4 of 4)	50589	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
238451	chrX	152904451	152904830	+	0	NA	Intergenic	Intergenic	-9802	NM_001178108	7739		NM_007150	ENSG00000147394	ZNF185	SCELL	zinc finger protein 185 with LIM domain	protein-coding
229107	chr9	114391021	114391300	+	0	NA	intron (NM_030767, intron 1 of 21)	MIR|SINE|MIR	-3178	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
76594	chr15	75355751	75357030	+	0	NA	exon (NM_006715, exon 24 of 26)	exon (NM_006715, exon 24 of 26)	-2705	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
10876	chr1	78040551	78041100	+	0	NA	Intergenic	Intergenic	-4145	NM_001304725	54810		NM_017655	ENSG00000137960	GIPC2	SEMCAP-2|SEMCAP2	GIPC PDZ domain containing family member 2	protein-coding
77458	chr15	84406951	84407050	+	0	NA	Intergenic	MamGypLTR3|LTR|Gypsy	-15519	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
8223	chr1	39685571	39685730	+	0	NA	intron (NM_016257, intron 1 of 3)	AluY|SINE|Alu	5783	NM_016257	51440		NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
154754	chr22	36506351	36507450	+	0	NA	intron (NM_001363042, intron 1 of 7)	CpG	140	NM_001363041	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
160410	chr3	28247201	28247900	+	0	NA	intron (NM_001331187, intron 1 of 3)	LTR16A1|LTR|ERVL	5931	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
162596	chr3	48691101	48691700	+	0	NA	exon (NM_001005909, exon 4 of 6)	exon (NM_001005909, exon 4 of 6)	-5485	NM_184231	51517		NM_016453	ENSG00000213672	NCKIPSD	AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH	NCK interacting protein with SH3 domain	protein-coding
194642	chr6	33589271	33590200	+	0	NA	TTS (NR_028361)	TTS (NR_028361)	3603	NR_027908	401253		NM_207497	ENSG00000197251	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
186627	chr5	138544651	138544950	+	0	NA	Intergenic	AluJo|SINE|Alu	-1564	NM_001364160	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
148952	chr21	10521121	10521480	+	0	NA	promoter-TSS (NM_001290224)	promoter-TSS (NM_001290224)	-283	NM_001290224	7179		NM_199259	ENSG00000274391	TPTE	CT44|PTEN2|TPTE1	transmembrane phosphatase with tensin homology	protein-coding
144012	chr20	33370351	33371330	+	0	NA	intron (NM_001278169, intron 10 of 13)	intron (NM_001278169, intron 10 of 13)	30679	NM_016408	51654		NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
90555	chr17	1505171	1505730	+	0	NA	intron (NM_016532, intron 7 of 11)	intron (NM_016532, intron 7 of 11)	11162	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
79273	chr16	525351	526100	+	0	NA	Intergenic	Tigger19b|DNA|TcMar-Tigger	1682	NR_024121	64493		NR_024121		LINC00235	C16orf10|LA16c-356B8.1|NCRNA00235	long intergenic non-protein coding RNA 235	ncRNA
150162	chr21	38924421	38924550	+	0	NA	intron (NR_120405, intron 1 of 3)	AluY|SINE|Alu	13944	NR_120405	400867		NR_120405		ETS2-AS1	-	ETS2 antisense RNA 1	ncRNA
219986	chr8	89887301	89887900	+	0	NA	Intergenic	HAL1|LINE|L1	-14268	NM_004337	734		NM_004337	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding
183064	chr5	73508671	73508830	+	0	NA	Intergenic	Intergenic	10325	NM_001207	689		NM_001207	ENSG00000145741	BTF3	BETA-NAC|BTF3a|BTF3b|NACB	basic transcription factor 3	protein-coding
39315	chr11	58927421	58927680	+	0	NA	promoter-TSS (NM_001220494)	promoter-TSS (NM_001220494)	-79	NM_001220494	92292		NM_080661	ENSG00000166840	GLYATL1	GATF-C|GNAT	glycine-N-acyltransferase like 1	protein-coding
69077	chr14	92035801	92036250	+	0	NA	intron (NM_004239, intron 1 of 20)	intron (NM_004239, intron 1 of 20)	4034	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
65186	chr14	49623821	49624900	+	0	NA	TTS (NM_002408)	TTS (NM_002408)	3561	NM_002408	4247		NM_002408	ENSG00000168282	MGAT2	CDG2A|CDGS2|GLCNACTII|GNT-II|GNT2	alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
153234	chr22	23973351	23975060	+	0	NA	intron (NM_001381852, intron 1 of 2).2	CpG	236	NM_001084392	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
93162	chr17	17780401	17780600	+	0	NA	promoter-TSS (NR_024007)	promoter-TSS (NR_024007)	-971	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
103430	chr17	78255851	78256780	+	0	NA	Intergenic	L2b|LINE|L2	7999	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
125852	chr2	24471851	24471950	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-19354	NM_147223	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
68342	chr14	77611271	77611430	+	0	NA	intron (NM_004863, intron 1 of 11)	AluJr|SINE|Alu	5287	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
94247	chr17	28683051	28683500	+	0	NA	exon (NM_001320755, exon 17 of 38)	exon (NM_001320755, exon 17 of 38)	21070	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
136102	chr2	173920121	173920850	+	0	NA	intron (NM_001172712, intron 4 of 6)	L1MC1|LINE|L1	43395	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
148602	chr21	5121021	5121630	+	0	NA	intron (NM_001320384, intron 5 of 5)	intron (NM_001320384, intron 5 of 5)	7044	NM_001363761	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
156456	chr22	41249501	41249700	+	0	NA	intron (NM_001278651, intron 15 of 16)	intron (NM_001278651, intron 15 of 16)	3450	NR_106949	102466758		NR_106949	ENSG00000274552	MIR6889	hsa-mir-6889	microRNA 6889	ncRNA
129735	chr2	70947751	70947850	+	0	NA	intron (NR_110273, intron 1 of 2)	intron (NR_110273, intron 1 of 2)	811	NR_110274	101927750		NR_110273	ENSG00000239322	ATP6V1B1-AS1	-	ATP6V1B1 antisense RNA 1	ncRNA
204592	chr7	5300271	5300930	+	0	NA	exon (NM_001300847, exon 10 of 11)	exon (NM_001300847, exon 10 of 11)	17657	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
141253	chr2	239817471	239818130	+	0	NA	Intergenic	Intergenic	54940	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
79086	chr16	175001	175450	+	0	NA	Intergenic	Intergenic	-1455	NM_000558	3039		NM_000558	ENSG00000206172	HBA1	ECYT7|HBA-T3|HBH|METHBA	hemoglobin subunit alpha 1	protein-coding
75177	chr15	64702651	64704050	+	0	NA	promoter-TSS (NM_002537)	promoter-TSS (NM_002537)	-69	NM_002537	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
47425	chr12	3119371	3119730	+	0	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	42171	NM_006675	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
54724	chr12	93572851	93572950	+	0	NA	exon (NM_003877, exon 2 of 3)	exon (NM_003877, exon 2 of 3)	225	NM_001270471	8835		NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
190487	chr5	180330051	180330550	+	0	NA	intron (NM_005110, intron 6 of 18)	AluSz|SINE|Alu	23036	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
178095	chr4	140359701	140360300	+	0	NA	intron (NM_001153690, intron 1 of 2)	MIR3|SINE|MIR	13392	NR_033939	100129858		NR_033939	ENSG00000196951	SCOC-AS1	-	SCOC antisense RNA 1	ncRNA
212675	chr7	129613801	129614150	+	0	NA	intron (NM_005011, intron 1 of 10)	intron (NM_005011, intron 1 of 10)	2255	NM_001293164	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
23166	chr1	226737901	226741330	+	0	NA	promoter-TSS (NM_002221)	promoter-TSS (NM_002221)	-440	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
165539	chr3	100711751	100711850	+	0	NA	intron (NM_006070, intron 1 of 7)	intron (NM_006070, intron 1 of 7)	2258	NM_001195478	10342		NM_006070	ENSG00000114354	TFG	HMSNP|SPG57|TF6|TRKT3	trafficking from ER to golgi regulator	protein-coding
138275	chr2	203637371	203638630	+	0	NA	Intergenic	Intergenic	-68475	NM_001243078	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
153380	chr22	24549751	24550050	+	0	NA	intron (NM_001284251, intron 1 of 5)	intron (NM_001284251, intron 1 of 5)	5238	NM_001284257	83606		NM_031444	ENSG00000138867	GUCD1	C22orf13|LLN4	guanylyl cyclase domain containing 1	protein-coding
154653	chr22	36340521	36341950	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	46732	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
179631	chr4	186159751	186160250	+	0	NA	intron (NM_001350178, intron 8 of 13)	(CA)n|Simple_repeat|Simple_repeat	15113	NM_015398	25854		NM_015398	ENSG00000109794	FAM149A	MST119|MSTP119	family with sequence similarity 149 member A	protein-coding
127638	chr2	43138051	43138150	+	0	NA	Intergenic	AluSx|SINE|Alu	-35655	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
47373	chr12	2577951	2578050	+	0	NA	intron (NM_199460, intron 13 of 49)	AluY|SINE|Alu	94220	NR_046579	100874235		NR_046579	ENSG00000256271	CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
66329	chr14	61427671	61428730	+	0	NA	intron (NM_006255, intron 2 of 13)	AluJb|SINE|Alu	106757	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
142228	chr20	3090451	3091350	+	0	NA	Intergenic	Intergenic	-6176	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
40481	chr11	64240431	64242590	+	0	NA	promoter-TSS (NM_057092)	promoter-TSS (NM_057092)	66	NM_001370362	2286		NM_004470	ENSG00000173486	FKBP2	FKBP-13|FKBP13|PPIase	FKBP prolyl isomerase 2	protein-coding
143381	chr20	28513321	28513580	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	89215	NR_132315	100289097		NR_132315	ENSG00000282826	FRG1CP	-	FSHD region gene 1 family member C, pseudogene	pseudo
99510	chr17	50212951	50213680	+	0	NA	Intergenic	Intergenic	-1379	NR_110806	101927230		NR_110806		TILAM	LINC01969	TGF-beta induced lncRNA activating myofibroblasts	ncRNA
207327	chr7	44046521	44047550	+	0	NA	intron (NM_001284313, intron 1 of 10)	L2a|LINE|L2	2333	NM_001014436	28988		NM_014063	ENSG00000136279	DBNL	ABP1|HIP-55|HIP55|SH3P7	drebrin like	protein-coding
130741	chr2	86792521	86792780	+	0	NA	promoter-TSS (NR_027353)	promoter-TSS (NR_027353)	-936	NR_027353	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
137329	chr2	196101151	196101800	+	0	NA	Intergenic	AmnSINE2|SINE|tRNA-Deu	-32638	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
68708	chr14	90525651	90525830	+	0	NA	3' UTR (NM_001010854, exon 20 of 20)	3' UTR (NM_001010854, exon 20 of 20)	-8531	NR_135274	105370619		NR_135274		LOC105370619	-	uncharacterized LOC105370619	ncRNA
30350	chr10	77801451	77801950	+	0	NA	intron (NM_004747, intron 27 of 31).2	L1MEg|LINE|L1	125055	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
216128	chr8	11421871	11422430	+	0	NA	3' UTR (NM_053279, exon 3 of 3)	3' UTR (NM_053279, exon 3 of 3)	44603	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
207243	chr7	43786451	43786750	+	0	NA	intron (NM_000712, intron 2 of 7)	L1MEc|LINE|L1	27920	NM_000712	644		NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA|BVRalpha	biliverdin reductase A	protein-coding
154903	chr22	37176651	37177350	+	0	NA	Intergenic	Intergenic	-1882	NM_001346222	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
204747	chr7	5578201	5578800	+	0	NA	Intergenic	Intergenic	-14316	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
118370	chr19	35714171	35714530	+	0	NA	intron (NM_001316903, intron 2 of 5)	intron (NM_001316903, intron 2 of 5)	-3653	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
62034	chr13	88437021	88437280	+	0	NA	Intergenic	L1MA9|LINE|L1	-103679	NR_047021	100874168		NR_047021		LINC00433	-	long intergenic non-protein coding RNA 433	ncRNA
150078	chr21	37404771	37405230	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	-13905	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
134749	chr2	144922651	144922950	+	0	NA	intron (NR_033870, intron 3 of 4)	Tigger1|DNA|TcMar-Tigger	254833	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
28043	chr10	43253671	43254750	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	12855	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
126011	chr2	25324051	25324350	+	0	NA	intron (NR_135490, intron 1 of 23)	L2c|LINE|L2	4521	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
118845	chr19	38635701	38636180	+	0	NA	intron (NM_013234, intron 7 of 7).2	MamRep137|DNA|TcMar-Tigger	-11709	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
210990	chr7	102236701	102236930	+	0	NA	intron (NM_181552, intron 22 of 23)	intron (NM_181552, intron 22 of 23)	-48326	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
43398	chr11	77128171	77128330	+	0	NA	promoter-TSS (NM_000260)	promoter-TSS (NM_000260)	4	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
214358	chr7	149602051	149602730	+	0	NA	intron (NR_027788, intron 3 of 7)	intron (NR_027788, intron 3 of 7)	22400	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
145127	chr20	38812851	38813580	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	7518	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
175716	chr4	77240471	77240730	+	0	NA	Intergenic	Intergenic	83393	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
166100	chr3	110314521	110314860	+	0	NA	Intergenic	Intergenic	711862	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
224038	chr9	3484171	3484330	+	0	NA	intron (NM_001282116, intron 1 of 16)	intron (NM_001282116, intron 1 of 16)	5184	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
66127	chr14	60159371	60159730	+	0	NA	intron (NM_001322280, intron 1 of 6)	intron (NM_001322280, intron 1 of 6)	5848	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
42662	chr11	72560151	72560450	+	0	NA	Intergenic	Intergenic	-10356	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
197949	chr6	89944821	89945630	+	0	NA	intron (NM_021813, intron 7 of 8)	L1MB7|LINE|L1	50756	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
199830	chr6	127742401	127742750	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L1MB3|LINE|L1	112613	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
16455	chr1	154586071	154586600	+	0	NA	exon (NM_001365048, exon 12 of 15)	exon (NM_001365048, exon 12 of 15)	18557	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
82694	chr16	20738371	20738730	+	0	NA	intron (NM_001304550, intron 2 of 4)	Charlie8|DNA|hAT-Charlie	3268	NM_017736	55623		NM_017736	ENSG00000066654	THUMPD1	NEDSOA|Tan1	THUMP domain containing 1	protein-coding
143887	chr20	32572251	32572550	+	0	NA	intron (NM_001256798, intron 1 of 10)	MIR|SINE|MIR	12933	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
52946	chr12	57452551	57453630	+	0	NA	Intergenic	Intergenic	-2217	NM_031479	83729		NM_031479	ENSG00000139269	INHBE	-	inhibin subunit beta E	protein-coding
130412	chr2	85340651	85340750	+	0	NA	Intergenic	Intergenic	-12711	NM_001368095	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
207821	chr7	50319171	50319330	+	0	NA	intron (NM_006060, intron 2 of 7)	intron (NM_006060, intron 2 of 7)	202	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
192294	chr6	20688721	20689150	+	0	NA	intron (NM_017774, intron 5 of 15)	L1MC1|LINE|L1	154478	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
16937	chr1	155909551	155910200	+	0	NA	intron (NM_001256821, intron 3 of 5)	AluSx1|SINE|Alu	1043	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
17602	chr1	156893521	156894180	+	0	NA	intron (NM_001080471, intron 1 of 22)	CpG	132	NM_001353683	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
75379	chr15	65706251	65706630	+	0	NA	intron (NM_001376919, intron 14 of 31)	L1MC5a|LINE|L1	-9504	NR_145750	109617020		NR_145750	ENSG00000238311	SNORD13E	-	small nucleolar RNA, C/D box 13E	snoRNA
71371	chr14	105496171	105497280	+	0	NA	intron (NM_001367178, intron 6 of 8)	intron (NM_001367178, intron 6 of 8)	5476	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
79753	chr16	1350001	1350300	+	0	NA	TTS (NM_003933)	TTS (NM_003933)	1728	NM_001001410	115939		NM_001001410	ENSG00000007520	TSR3	C16orf42|HsTsr3	TSR3 ribosome maturation factor	protein-coding
74346	chr15	58608171	58609080	+	0	NA	intron (NM_001320570, intron 13 of 14)	intron (NM_001320570, intron 13 of 14)	84982	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
220463	chr8	100424201	100424400	+	0	NA	Intergenic	Intergenic	41537	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
77810	chr15	88604151	88604900	+	0	NA	promoter-TSS (NR_120369)	promoter-TSS (NR_120369)	78	NR_120369	101929743		NR_120369	ENSG00000249487	LINC01586	-	long intergenic non-protein coding RNA 1586	ncRNA
185275	chr5	126339151	126339550	+	0	NA	Intergenic	Intergenic	-20770	NM_001146319	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
22725	chr1	224193501	224193700	+	0	NA	TTS (NM_001321542)	TTS (NM_001321542)	9920	NM_001321542	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
32579	chr10	103459621	103460080	+	0	NA	promoter-TSS (NM_001001412)	promoter-TSS (NM_001001412)	-950	NM_001001412	255022		NM_001001412	ENSG00000185933	CALHM1	FAM26C	calcium homeostasis modulator 1	protein-coding
7615	chr1	35457301	35458130	+	0	NA	intron (NM_024874, intron 9 of 20)	intron (NM_024874, intron 9 of 20)	-91638	NR_046659	100861513		NR_046659	ENSG00000227409	ZMYM4-AS1	-	ZMYM4 antisense RNA 1	ncRNA
71902	chr15	22666771	22666930	+	0	NA	intron (NR_003521, intron 1 of 10)	intron (NR_003521, intron 1 of 10)	2111	NR_003521	339005		NR_003521		WHAMMP3	WHAMML1|WHDC1L1	WHAMM pseudogene 3	pseudo
167796	chr3	133490701	133491680	+	0	NA	promoter-TSS (NR_135277)	promoter-TSS (NR_135277)	-44	NR_135276	85003		NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA
81496	chr16	8950521	8950830	+	0	NA	intron (NM_003470, intron 1 of 30)	intron (NM_003470, intron 1 of 30)	-1021	NR_135826	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
49185	chr12	15532551	15532850	+	0	NA	intron (NM_030667, intron 12 of 26)	intron (NM_030667, intron 12 of 26)	-13911	NM_030671	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
98298	chr17	46233901	46234250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-8708	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
211543	chr7	105393851	105394150	+	0	NA	Intergenic	L1MB8|LINE|L1	-4610	NM_001350740	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
209911	chr7	92178931	92179950	+	0	NA	promoter-TSS (NM_001384932)	promoter-TSS (NM_001384932)	-298	NM_001384934	401387		NM_001045475	ENSG00000240720	LRRD1	-	leucine rich repeats and death domain containing 1	protein-coding
210646	chr7	100473651	100473750	+	0	NA	intron (NM_001303043, intron 3 of 4)	AluSx|SINE|Alu	5514	NM_030935	81628		NM_030935	ENSG00000166925	TSC22D4	SPACDR|THG-1|THG1|TILZ2	TSC22 domain family member 4	protein-coding
219578	chr8	79762801	79763200	+	0	NA	Intergenic	Intergenic	3475	NM_001282851	23462		NM_012258	ENSG00000164683	HEY1	BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1	hes related family bHLH transcription factor with YRPW motif 1	protein-coding
110140	chr19	1608621	1609680	+	0	NA	TTS (NM_001351778)	TTS (NM_001351778)	-3688	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
181936	chr5	54983671	54983830	+	0	NA	intron (NM_007036, intron 1 of 2)	intron (NM_007036, intron 1 of 2)	1843	NM_007036	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
62817	chr13	109760501	109761150	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	25758	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
83893	chr16	28977521	28978400	+	0	NA	exon (NM_001142450, exon 4 of 13)	exon (NM_001142450, exon 4 of 13)	3182	NM_001142451	83985		NM_032038	ENSG00000169682	SPNS1	HSpin1|LAT|PP2030|SLC62A1|SLC63A1|SPIN1|SPINL|nrs	SPNS lysolipid transporter 1, lysophospholipid	protein-coding
215757	chr8	1982551	1982850	+	0	NA	intron (NM_014867, intron 1 of 1)	L1M1|LINE|L1	9023	NM_014867	9920		NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
175133	chr4	55347671	55347930	+	0	NA	intron (NM_024592, intron 1 of 4)	intron (NM_024592, intron 1 of 4)	1558	NM_024592	79644		NM_024592	ENSG00000128039	SRD5A3	CDG1P|CDG1Q|KRIZI|S5AR|S5AR 3|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
205348	chr7	12692901	12693300	+	0	NA	Intergenic	Intergenic	5467	NM_005738	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
197588	chr6	80003551	80004950	+	0	NA	promoter-TSS (NM_001166691)	promoter-TSS (NM_001166691)	-355	NM_001166691	7272		NM_003318	ENSG00000112742	TTK	CT96|ESK|MPH1|MPS1|MPS1L1|PYT	TTK protein kinase	protein-coding
169801	chr3	176872771	176873280	+	0	NA	Intergenic	L1M1|LINE|L1	-56024	NR_110819	101928684		NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
83922	chr16	29028401	29028600	+	0	NA	Intergenic	Intergenic	43448	NM_001014988	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
45440	chr11	118435301	118437100	+	0	NA	promoter-TSS (NM_005933)	promoter-TSS (NM_005933)	-292	NM_001197104	4297		NM_005933	ENSG00000118058	KMT2A	ALL-1|ALL1|CXXC7|GAS7|HRX|HTRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding
167768	chr3	132726151	132726930	+	0	NA	intron (NR_152743, intron 2 of 4)	intron (NR_152743, intron 2 of 4)	-4081	NR_037804	100532724		NR_037804	ENSG00000274810	NPHP3-ACAD11	NPHP3	NPHP3-ACAD11 readthrough (NMD candidate)	ncRNA
2249	chr1	8899951	8900850	+	0	NA	Intergenic	AluSz|SINE|Alu	21565	NR_038351	100505975		NR_038351	ENSG00000230679	ENO1-AS1	-	ENO1 antisense RNA 1	ncRNA
58691	chr12	132552801	132553000	+	0	NA	intron (NM_001382740, intron 5 of 11)	CpG	-29097	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
236426	chrX	71300851	71301030	+	0	NA	promoter-TSS (NM_001303277)	promoter-TSS (NM_001303277)	-810	NM_012278	26548		NM_012278	ENSG00000147166	ITGB1BP2	CHORDC3|ITGB1BP|MELUSIN|MSTP015	integrin subunit beta 1 binding protein 2	protein-coding
86639	chr16	67441801	67442200	+	0	NA	intron (NM_004691, intron 4 of 7)	intron (NM_004691, intron 4 of 7)	10879	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
148420	chr20	63955901	63958280	+	0	NA	promoter-TSS (NM_001353476)	promoter-TSS (NM_001353476)	-674	NM_001353477	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
22917	chr1	225910021	225910480	+	0	NA	Intergenic	Intergenic	11892	NR_106799	102466270		NR_106799	ENSG00000284519	MIR6741	hsa-mir-6741	microRNA 6741	ncRNA
233395	chr9	137553071	137553900	+	0	NA	TTS (NM_001346376)	TTS (NM_001346376)	1606	NM_032477	64975		NM_032477	ENSG00000182154	MRPL41	BMRP|MRP-L27|MRPL27|PIG3|RPML27|mL41	mitochondrial ribosomal protein L41	protein-coding
228595	chr9	104990201	104990400	+	0	NA	Intergenic	Intergenic	-62145	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
59438	chr13	25871271	25871630	+	0	NA	intron (NM_016529, intron 33 of 36)	intron (NM_016529, intron 33 of 36)	180566	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
158421	chr22	50543151	50543330	+	0	NA	Intergenic	AluYm1|SINE|Alu	-2659	NM_138433	113730		NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
78359	chr15	91319351	91319650	+	0	NA	Intergenic	Intergenic	-143839	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
64220	chr14	23067351	23067830	+	0	NA	intron (NM_014977, intron 9 of 18)	intron (NM_014977, intron 9 of 18)	3979	NM_001164817	22985		NM_014977	ENSG00000100813	ACIN1	ACINUS|ACN|fSAP152	apoptotic chromatin condensation inducer 1	protein-coding
234724	chrX	21745801	21746000	+	0	NA	intron (NR_045617, intron 2 of 5)	intron (NR_045617, intron 2 of 5)	12216	NR_045617	23676		NM_014332	ENSG00000091482	SMPX	Chisel|Csl|DFN6|DFNX4|MPD7	small muscle protein X-linked	protein-coding
66099	chr14	59511951	59512230	+	0	NA	intron (NM_001164399, intron 17 of 19)	L1ME1|LINE|L1	27573	NM_016475	51528		NM_016475	ENSG00000050130	JKAMP	C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP	JNK1/MAPK8 associated membrane protein	protein-coding
196131	chr6	42405771	42405930	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	46201	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
211270	chr7	102690951	102691050	+	0	NA	intron (NR_146066, intron 3 of 11)	AluSx1|SINE|Alu	-19265	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
125780	chr2	23688401	23688600	+	0	NA	intron (NM_052920, intron 6 of 13)	intron (NM_052920, intron 6 of 13)	238623	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
224974	chr9	33080271	33080700	+	0	NA	Intergenic	AluSx|SINE|Alu	-3811	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
143506	chr20	31513771	31515300	+	0	NA	promoter-TSS (NM_178582)	promoter-TSS (NM_178582)	93	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
65208	chr14	49695971	49696130	+	0	NA	intron (NM_172193, intron 1 of 12)	AluY|SINE|Alu	2930	NM_172193	122773		NM_172193	ENSG00000197776	KLHDC1	MST025	kelch domain containing 1	protein-coding
35137	chr11	712971	713780	+	0	NA	intron (NM_022772, intron 4 of 20)	intron (NM_022772, intron 4 of 20)	-6292	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
118527	chr19	36012121	36012580	+	0	NA	intron (NM_032878, intron 3 of 6)	intron (NM_032878, intron 3 of 6)	1863	NM_001297701	84964		NM_032878	ENSG00000239382	ALKBH6	ABH6	alkB homolog 6	protein-coding
16306	chr1	154176171	154176950	+	0	NA	intron (NM_001364680, intron 2 of 8)	intron (NM_001364680, intron 2 of 8)	1644	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
226300	chr9	68568071	68568380	+	0	NA	Intergenic	LTR52|LTR|ERVL	-21623	NR_109769	101927015		NR_109769		LINC01506	-	long intergenic non-protein coding RNA 1506	ncRNA
150934	chr21	44267601	44268080	+	0	NA	Intergenic	MER90|LTR|ERV1	-5943	NM_175867	29947		NM_013369	ENSG00000142182	DNMT3L	-	DNA methyltransferase 3 like	protein-coding
43156	chr11	75339001	75339830	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	-4229	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
214671	chr7	150954901	150955100	+	0	NA	intron (NM_172056, intron 5 of 8)	intron (NM_172056, intron 5 of 8)	804	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
183408	chr5	77972371	77973200	+	0	NA	Intergenic	CpG	14538	NR_105013	101929154		NR_105012	ENSG00000287162	LOC101929154	-	uncharacterized LOC101929154	ncRNA
176206	chr4	83660771	83660930	+	0	NA	Intergenic	L1MC1|LINE|L1	124742	NM_032717	84803		NM_032717	ENSG00000138678	GPAT3	AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1	glycerol-3-phosphate acyltransferase 3	protein-coding
39233	chr11	57654651	57654950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2944	NM_001142597	10978		NM_006831	ENSG00000172409	CLP1	HEAB|hClp1	cleavage factor polyribonucleotide kinase subunit 1	protein-coding
145292	chr20	41036601	41037000	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	7978	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
202770	chr6	159057871	159058030	+	0	NA	Intergenic	Intergenic	-12798	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
46705	chr11	128830051	128830800	+	0	NA	Intergenic	Intergenic	12044	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
121893	chr19	48368821	48369080	+	0	NA	intron (NM_012451, intron 2 of 4)	MIRb|SINE|MIR	4583	NM_012451	23546		NM_012451	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding
234623	chrX	19856271	19857030	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	-23499	NM_001353895	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
169665	chr3	171566671	171567100	+	0	NA	Intergenic	Intergenic	-106477	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
16548	chr1	154961051	154963030	+	0	NA	promoter-TSS (NM_138300)	promoter-TSS (NM_138300)	-258	NM_138300	90780		NM_138300	ENSG00000163348	PYGO2	1190004M21Rik	pygopus family PHD finger 2	protein-coding
142363	chr20	3779171	3779580	+	0	NA	intron (NM_015417, intron 2 of 6)	intron (NM_015417, intron 2 of 6)	2073	NM_015417	25876		NM_015417	ENSG00000101222	SPEF1	C20orf28|CLAMP|SPEF1A	sperm flagellar 1	protein-coding
114195	chr19	11417871	11418030	+	0	NA	intron (NM_001161616, intron 2 of 18)	AluJo|SINE|Alu	1364	NM_001161616	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
154115	chr22	31103901	31104300	+	0	NA	TTS (NM_080430)	TTS (NM_080430)	3468	NM_080430	140606		NM_080430	ENSG00000198832	SELENOM	SELM|SEPM	selenoprotein M	protein-coding
71679	chr15	20006371	20006730	+	0	NA	Intergenic	(CAGGC)n|Simple_repeat|Simple_repeat	-276194	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
177376	chr4	110841151	110841250	+	0	NA	Intergenic	AluY|SINE|Alu	19447	NR_030643	100126354		NR_030643	ENSG00000215961	MIR297	MIRN297|hsa-mir-297	microRNA 297	ncRNA
75671	chr15	67819471	67819830	+	0	NA	Intergenic	Intergenic	-5859	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
165728	chr3	104596521	104596850	+	0	NA	Intergenic	Intergenic	-770028	NM_001243283	214		NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
151932	chr22	19038401	19038600	+	0	NA	non-coding (NR_033674, exon 9 of 9)	non-coding (NR_033674, exon 9 of 9)	9875	NR_024157	25786		NR_024157	ENSG00000273311	DGCR11	DGS-D	DiGeorge syndrome critical region gene 11	ncRNA
87924	chr16	79278201	79279780	+	0	NA	Intergenic	Intergenic	321747	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
99845	chr17	55420801	55421280	+	0	NA	intron (NM_012329, intron 1 of 6)	CpG	795	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
17979	chr1	160481901	160482530	+	0	NA	Intergenic	Intergenic	41040	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
187111	chr5	140404071	140404380	+	0	NA	intron (NM_020690, intron 1 of 35)	intron (NM_020690, intron 1 of 35)	2392	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
20622	chr1	199041501	199042030	+	0	NA	intron (NR_126351, intron 2 of 2)	intron (NR_126351, intron 2 of 2)	-22801	NR_110525	102800316		NR_110525		LINC01222	TCONS_00000112	long intergenic non-protein coding RNA 1222	ncRNA
140065	chr2	231425351	231426780	+	0	NA	Intergenic	Intergenic	29871	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
53473	chr12	66119871	66120150	+	0	NA	3' UTR (NM_032338, exon 3 of 3)	3' UTR (NM_032338, exon 3 of 3)	10740	NM_032338	84298		NM_032338	ENSG00000139233	LLPH	C12orf31|hLLP	LLP homolog, long-term synaptic facilitation factor	protein-coding
227270	chr9	89373621	89374600	+	0	NA	intron (NR_163887, intron 13 of 15)	intron (NR_163887, intron 13 of 15)	55259	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
188063	chr5	150047421	150047680	+	0	NA	intron (NM_001366501, intron 15 of 18)	intron (NM_001366501, intron 15 of 18)	39004	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
159923	chr3	16998151	16998630	+	0	NA	intron (NM_015184, intron 1 of 5)	intron (NM_015184, intron 1 of 5)	65194	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
226965	chr9	81002221	81002480	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	687185	NM_001303104	7088		NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1|TLE-1	TLE family member 1, transcriptional corepressor	protein-coding
231430	chr9	131237801	131239080	+	0	NA	Intergenic	Intergenic	38070	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
5619	chr1	26159401	26159800	+	0	NA	intron (NM_024869, intron 1 of 1)	intron (NM_024869, intron 1 of 1)	521	NM_024869	79927		NM_024869	ENSG00000197245	FAM110D	GRRP1	family with sequence similarity 110 member D	protein-coding
158233	chr22	50281121	50282230	+	0	NA	exon (NM_001376884, exon 20 of 36)	exon (NM_001376884, exon 20 of 36)	-11295	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
169350	chr3	160397951	160398050	+	0	NA	intron (NR_148403, intron 2 of 20)	intron (NR_148403, intron 2 of 20)	1225	NM_020800	57560		NM_020800	ENSG00000068885	IFT80	ATD2|CFAP167|FAP167|SRTD2|WDR56	intraflagellar transport 80	protein-coding
47863	chr12	6634471	6634630	+	0	NA	intron (NM_020400, intron 1 of 1)	AluSz|SINE|Alu	1409	NM_020400	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
9801	chr1	53688951	53689050	+	0	NA	intron (NM_001367484, intron 2 of 10)	intron (NM_001367484, intron 2 of 10)	45204	NM_147193	148979		NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding
53325	chr12	64616521	64617100	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-5699	NR_030347	693129		NR_030347	ENSG00000207546	MIR548C	MIRN548C	microRNA 548c	ncRNA
192972	chr6	27875601	27875800	+	0	NA	Intergenic	AluJb|SINE|Alu	-2166	NM_003546	8368		NM_003546	ENSG00000275126	H4C13	H4-16|H4.k|H4/k|H4C1|H4C11|H4C12|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4FK|HIST1H4L	H4 clustered histone 13	protein-coding
59793	chr13	30335101	30336180	+	0	NA	Intergenic	Intergenic	-28089	NM_032116	84056		NM_032116	ENSG00000102781	KATNAL1	-	katanin catalytic subunit A1 like 1	protein-coding
143702	chr20	32204571	32204930	+	0	NA	intron (NM_002657, intron 1 of 2)	intron (NM_002657, intron 1 of 2)	2993	NM_002657	5326		NM_002657	ENSG00000126003	PLAGL2	ZNF900	PLAG1 like zinc finger 2	protein-coding
164570	chr3	64014301	64014800	+	0	NA	intron (NM_014814, intron 5 of 7)	intron (NM_014814, intron 5 of 7)	8922	NM_001271781	9861		NM_014814	ENSG00000163636	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	proteasome 26S subunit, non-ATPase 6	protein-coding
136285	chr2	174726071	174726500	+	0	NA	Intergenic	Intergenic	6485	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
145038	chr20	38095251	38095350	+	0	NA	Intergenic	LTR78|LTR|ERV1	61554	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
93908	chr17	21275101	21276680	+	0	NA	Intergenic	CpG	-8821	NM_145109	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
123091	chr19	51438371	51438530	+	0	NA	Intergenic	Intergenic	20004	NM_014442	27181		NM_014442	ENSG00000105366	SIGLEC8	SAF2|SIGLEC-8|SIGLEC8L	sialic acid binding Ig like lectin 8	protein-coding
90626	chr17	1648221	1650230	+	0	NA	exon (NM_031430, exon 3 of 8)	exon (NM_031430, exon 3 of 8)	641	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
33278	chr10	114539351	114539450	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	-12487	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
40765	chr11	64856621	64857050	+	0	NA	intron (NM_001282444, intron 5 of 6)	intron (NM_001282444, intron 5 of 6)	-12182	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
224127	chr9	4682071	4682530	+	0	NA	intron (NM_017913, intron 1 of 6)	AluSx1|SINE|Alu	2731	NM_017913	55664		NM_017913	ENSG00000106993	CDC37L1	CDC37B|HARC	cell division cycle 37 like 1, HSP90 cochaperone	protein-coding
109065	chr18	79902921	79903180	+	0	NA	3' UTR (NM_025078, exon 6 of 6)	3' UTR (NM_025078, exon 6 of 6)	39382	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
157813	chr22	46942951	46943050	+	0	NA	intron (NR_104292, intron 10 of 13)	intron (NR_104292, intron 10 of 13)	-26958	NR_122047	642757		NR_122047	ENSG00000280080	TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
117893	chr19	32700871	32701030	+	0	NA	intron (NM_001105570, intron 1 of 2)	AluJb|SINE|Alu	8989	NM_001105570	390916		NM_001105570	ENSG00000213965	NUDT19	RP2	nudix hydrolase 19	protein-coding
12803	chr1	109821351	109821650	+	0	NA	Intergenic	Intergenic	-57577	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
4973	chr1	24186271	24186430	+	0	NA	intron (NM_173065, intron 1 of 5)	MIRb|SINE|MIR	939	NM_173064	163702		NM_170743	ENSG00000185436	IFNLR1	CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2	interferon lambda receptor 1	protein-coding
10366	chr1	64950201	64950480	+	0	NA	intron (NM_001321852, intron 1 of 24)	AluSc|SINE|Alu	16209	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
226851	chr9	78009401	78009800	+	0	NA	intron (NM_002072, intron 1 of 6)	intron (NM_002072, intron 1 of 6)	22211	NM_002072	2776		NM_002072	ENSG00000156052	GNAQ	CMAL|CMC1|G-ALPHA-q|GAQ|SWS	G protein subunit alpha q	protein-coding
216804	chr8	22556551	22557080	+	0	NA	exon (NM_005775, exon 4 of 21)	exon (NM_005775, exon 4 of 21)	4888	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
214945	chr7	151767321	151768000	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	-31346	NM_001304527	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
40790	chr11	64892171	64893700	+	0	NA	non-coding (NR_133638, exon 2 of 2)	non-coding (NR_133638, exon 2 of 2)	514	NR_133639	105369343		NR_133638	ENSG00000229719	MIR194-2HG	-	MIR194-2 host gene	ncRNA
11835	chr1	92951001	92951930	+	0	NA	intron (NM_001006605, intron 1 of 4)	MLT1E2|LTR|ERVL-MaLR	9997	NM_001006605	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
235101	chrX	40472121	40472680	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-108570	NM_005765	10159		NM_005765	ENSG00000182220	ATP6AP2	APT6M8-9|ATP6IP2|ATP6M8-9|CDG2R|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS	ATPase H+ transporting accessory protein 2	protein-coding
46133	chr11	123039171	123039730	+	0	NA	Intergenic	AluSz|SINE|Alu	18706	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
162825	chr3	49165351	49167030	+	0	NA	intron (NM_022903, intron 1 of 1)	CpG	141	NM_022903	64925		NM_022903	ENSG00000177352	CCDC71	-	coiled-coil domain containing 71	protein-coding
85048	chr16	31881521	31881780	+	0	NA	intron (NM_001265588, intron 2 of 4)	intron (NM_001265588, intron 2 of 4)	7843	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
84933	chr16	31284321	31284580	+	0	NA	intron (NM_000632, intron 12 of 29)	L1PA5|LINE|L1	24475	NM_000632	3684		NM_000632	ENSG00000169896	ITGAM	CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6	integrin subunit alpha M	protein-coding
74508	chr15	60364171	60364530	+	0	NA	intron (NM_001002857, intron 5 of 13)	intron (NM_001002857, intron 5 of 13)	33636	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
92525	chr17	8925771	8926530	+	0	NA	intron (NM_001142633, intron 1 of 18)	L2a|LINE|L2	-13633	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
3735	chr1	16632571	16632730	+	0	NA	Intergenic	AluSx|SINE|Alu	-1744	NR_026752	84809		NM_032723		CROCCP2	CROCCL1	CROCC pseudogene 2	pseudo
164327	chr3	57805551	57806180	+	0	NA	intron (NR_165328, intron 2 of 22)	L2c|LINE|L2	48609	NM_001304421	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
20275	chr1	194295421	194296080	+	0	NA	Intergenic	Intergenic	991005	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
132461	chr2	105871151	105871580	+	0	NA	intron (NM_001004722, intron 3 of 3)	intron (NM_001004722, intron 3 of 3)	19518	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
175512	chr4	74166871	74167030	+	0	NA	intron (NM_001351310, intron 3 of 8)	L1M3e|LINE|L1	8832	NM_001004346	441024		NM_001004346	ENSG00000163738	MTHFD2L	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like	protein-coding
199054	chr6	111487701	111488280	+	0	NA	intron (NR_034111, intron 3 of 3)	MER45B|DNA|hAT-Tip100	-4275	NM_001286432	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
38916	chr11	47423651	47423950	+	0	NA	intron (NM_002804, intron 6 of 11)	AluSp|SINE|Alu	2639	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
145974	chr20	46343121	46343980	+	0	NA	Intergenic	Intergenic	20875	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
133158	chr2	112724021	112724480	+	0	NA	intron (NM_001350494, intron 10 of 16)	intron (NM_001350494, intron 10 of 16)	2764	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
147167	chr20	56443651	56443750	+	0	NA	intron (NM_020356, intron 2 of 5)	LTR65|LTR|ERV1	-24885	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
174729	chr4	42701701	42702130	+	0	NA	Intergenic	L1PA4|LINE|L1	-44810	NM_001105529	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
164243	chr3	57111651	57112350	+	0	NA	intron (NM_001318864, intron 4 of 13)	intron (NM_001318864, intron 4 of 13)	-32732	NM_001377408	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
3462	chr1	15945371	15946050	+	0	NA	intron (NM_001324138, intron 5 of 14)	intron (NM_001324138, intron 5 of 14)	30391	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
205861	chr7	24967651	24968350	+	0	NA	intron (NM_015550, intron 1 of 22)	L2|LINE|L2	12178	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
162547	chr3	48640771	48641330	+	0	NA	intron (NM_001407, intron 33 of 34)	intron (NM_001407, intron 33 of 34)	3230	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
206006	chr7	26250271	26250430	+	0	NA	Intergenic	MER48|LTR|ERV1	-41512	NM_013322	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
128874	chr2	64052501	64052780	+	0	NA	Intergenic	Intergenic	-33212	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
160829	chr3	33058171	33058330	+	0	NA	exon (NM_001079811, exon 6 of 16)	exon (NM_001079811, exon 6 of 16)	38582	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
132790	chr2	110157251	110157430	+	0	NA	intron (NM_001374256, intron 11 of 19)	intron (NM_001374256, intron 11 of 19)	-39201	NM_001371559	7851		NM_005434	ENSG00000144063	MALL	BENE	mal, T cell differentiation protein like	protein-coding
224292	chr9	6431071	6431500	+	0	NA	intron (NR_046386, intron 2 of 16)	intron (NR_046386, intron 2 of 16)	18086	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
87368	chr16	70419501	70420300	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	19200	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
129906	chr2	73236801	73237300	+	0	NA	intron (NM_001166285, intron 2 of 12)	intron (NM_001166285, intron 2 of 12)	2742	NM_006429	10574		NM_006429	ENSG00000135624	CCT7	CCTETA|CCTH|NIP7-1|TCP1ETA	chaperonin containing TCP1 subunit 7	protein-coding
51876	chr12	53495671	53495830	+	0	NA	intron (NM_006301, intron 1 of 14)	intron (NM_006301, intron 1 of 14)	3708	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
1459	chr1	2662621	2663080	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-29834	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
21125	chr1	203640971	203641130	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	13113	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
80033	chr16	1948601	1949050	+	0	NA	intron (NM_005061, intron 4 of 9)	AluY|SINE|Alu	-5626	NM_001382264	51734		NM_016332	ENSG00000198736	MSRB1	HSPC270|SELENOR|SELENOX|SELR|SELX|SEPX1|SepR	methionine sulfoxide reductase B1	protein-coding
54841	chr12	95006271	95006430	+	0	NA	Intergenic	L1MB2|LINE|L1	-2637	NM_001258338	55967		NM_018838	ENSG00000184752	NDUFA12	B17.2|DAP13|MC1DN23	NADH:ubiquinone oxidoreductase subunit A12	protein-coding
87677	chr16	74605571	74605730	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	1464	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
186920	chr5	139599171	139599330	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	37911	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
205605	chr7	22029251	22029350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-83401	NM_001127370	55536		NM_018719	ENSG00000164649	CDCA7L	JPO2|R1|RAM2	cell division cycle associated 7 like	protein-coding
58399	chr12	131902921	131903380	+	0	NA	intron (NM_003565, intron 3 of 27)	intron (NM_003565, intron 3 of 27)	8528	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
103375	chr17	78133601	78135500	+	0	NA	exon (NM_152468, exon 8 of 16)	exon (NM_152468, exon 8 of 16)	-2123	NM_007267	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
19811	chr1	182613751	182614100	+	0	NA	Intergenic	Intergenic	-1215	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
119187	chr19	39427021	39427530	+	0	NA	3' UTR (NM_001351693, exon 20 of 20)	3' UTR (NM_001351693, exon 20 of 20)	8674	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
138484	chr2	207092021	207092280	+	0	NA	intron (NR_073108, intron 3 of 4)	intron (NR_073108, intron 3 of 4)	17923	NR_036227	100423036		NR_036227	ENSG00000253008	MIR2355	mir-2355	microRNA 2355	ncRNA
236315	chrX	68822671	68822980	+	0	NA	Intergenic	Intergenic	-6196	NM_004429	1947		NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
103840	chr17	79608001	79608230	+	0	NA	intron (NM_001350453, intron 1 of 13)	intron (NM_001350453, intron 1 of 13)	2936	NM_001350453	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
201483	chr6	148867651	148868150	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	96784	NR_038408	100128176		NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA
142069	chr20	2264671	2264830	+	0	NA	Intergenic	L1PA6|LINE|L1	-31251	NM_003245	7053		NM_003245	ENSG00000125780	TGM3	TGE|UHS2	transglutaminase 3	protein-coding
13604	chr1	116379251	116379750	+	0	NA	intron (NM_001160233, intron 1 of 22)	intron (NM_001160233, intron 1 of 22)	-3870	NM_001160234	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
167592	chr3	129562451	129562980	+	0	NA	intron (NM_015103, intron 27 of 35)	intron (NM_015103, intron 27 of 35)	14330	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
86331	chr16	66406401	66407150	+	0	NA	Intergenic	CpG	-1749	NR_046242	100505865		NR_046242		LINC00920	CALIC|LINRIS	long intergenic non-protein coding RNA 920	ncRNA
129656	chr2	70243901	70244300	+	0	NA	intron (NR_147217, intron 1 of 12)	L2a|LINE|L2	4528	NM_022037	7072		NM_022037	ENSG00000116001	TIA1	ALS26|TIA-1|WDM	TIA1 cytotoxic granule associated RNA binding protein	protein-coding
5937	chr1	26879271	26879680	+	0	NA	3' UTR (NM_018066, exon 5 of 5)	3' UTR (NM_018066, exon 5 of 5)	10808	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
78651	chr15	94287651	94288530	+	0	NA	intron (NM_001385002, intron 2 of 23)	L1MEf|LINE|L1	56529	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
75520	chr15	66498821	66500030	+	0	NA	exon (NM_000968, exon 10 of 10)	exon (NM_000968, exon 10 of 10)	-1610	NM_001329614	10302		NM_006049	ENSG00000174446	SNAPC5	SNAP19	small nuclear RNA activating complex polypeptide 5	protein-coding
229150	chr9	114491721	114491980	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	11365	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
54148	chr12	76553501	76553950	+	0	NA	intron (NM_001319652, intron 1 of 25)	AluSz|SINE|Alu	6046	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
1288	chr1	2331221	2331480	+	0	NA	intron (NM_024848, intron 12 of 13)	intron (NM_024848, intron 12 of 13)	21311	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
60693	chr13	43875971	43876400	+	0	NA	intron (NM_144974, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	-2993	NM_001128303	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
205955	chr7	26150671	26151500	+	0	NA	Intergenic	L2b|LINE|L2	-1113	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
36285	chr11	3806621	3806880	+	0	NA	intron (NR_027017, intron 1 of 7)	AluSx|SINE|Alu	-1260	NR_027018	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
208413	chr7	66742521	66744250	+	0	NA	intron (NM_001367749, intron 1 of 4)	AluJb|SINE|Alu	2652	NM_001367735	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
32320	chr10	102173301	102173830	+	0	NA	Intergenic	AluY|SINE|Alu	21176	NM_004741	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
131414	chr2	96282801	96283750	+	0	NA	exon (NM_014014, exon 34 of 45)	exon (NM_014014, exon 34 of 45)	17050	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
227543	chr9	91784201	91784600	+	0	NA	intron (NM_001318204, intron 1 of 7)	L1ME3|LINE|L1	-148055	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
188369	chr5	151780551	151780850	+	0	NA	intron (NM_198395, intron 1 of 11)	AluY|SINE|Alu	-8524	NR_132345	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
19118	chr1	171503701	171504130	+	0	NA	intron (NM_015172, intron 1 of 33)	THE1B|LTR|ERVL-MaLR	18385	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
216210	chr8	11914271	11914430	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-46263	NM_001384723	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
97164	chr17	42606871	42607630	+	0	NA	intron (NR_026697, intron 1 of 7)	AluJb|SINE|Alu	2124	NM_178126	162427		NM_178126	ENSG00000141699	RETREG3	FAM134C	reticulophagy regulator family member 3	protein-coding
206494	chr7	33107451	33108050	+	0	NA	intron (NM_203288, intron 1 of 5)	intron (NM_203288, intron 1 of 5)	1654	NM_203288	6100		NM_203288	ENSG00000164610	RP9	PAP-1|PAP1	RP9 pre-mRNA splicing factor	protein-coding
162792	chr3	49099501	49099950	+	0	NA	TTS (NR_106950)	TTS (NR_106950)	189	NR_106950	102465536		NR_106950	ENSG00000284488	MIR6890	hsa-mir-6890	microRNA 6890	ncRNA
73989	chr15	52022201	52022550	+	0	NA	intron (NM_002748, intron 1 of 5)	AluJb|SINE|Alu	3156	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
181705	chr5	50647551	50648050	+	0	NA	Intergenic	Intergenic	-18131	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
142110	chr20	2658321	2659530	+	0	NA	TTS (NM_001258384)	TTS (NM_001258384)	1986	NR_002738	26792		NR_002738	ENSG00000226572	SNORD57	RNU57|U57	small nucleolar RNA, C/D box 57	snoRNA
120625	chr19	45057671	45058380	+	0	NA	intron (NM_001278439, intron 6 of 19)	intron (NM_001278439, intron 6 of 19)	-17602	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
14154	chr1	121184301	121185300	+	0	NA	promoter-TSS (NM_001329984)	promoter-TSS (NM_001329984)	-175	NM_001329984	653464		NM_001271872	ENSG00000171943	SRGAP2C	SRGAP2P1	SLIT-ROBO Rho GTPase activating protein 2C	protein-coding
107403	chr18	46105451	46105550	+	0	NA	intron (NR_026978, intron 2 of 8)	intron (NR_026978, intron 2 of 8)	1115	NM_138443	115106		NM_138443	ENSG00000152240	HAUS1	CCDC5|HEI-C|HEIC|HsT1461	HAUS augmin like complex subunit 1	protein-coding
222743	chr8	141408521	141408980	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	-12638	NM_007079	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
101395	chr17	67363571	67363830	+	0	NA	intron (NM_001316341, intron 1 of 12)	intron (NM_001316341, intron 1 of 12)	2877	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
58197	chr12	126708471	126708830	+	0	NA	Intergenic	MER68B|LTR|ERVL	-18332	NR_110035	100996671		NR_110034	ENSG00000256732	LOC100996671	-	uncharacterized LOC100996671	ncRNA
73238	chr15	41690571	41690950	+	0	NA	promoter-TSS (NR_030356)	promoter-TSS (NR_030356)	-825	NR_030356	693211		NR_030356	ENSG00000207766	MIR626	MIRN626|hsa-mir-626	microRNA 626	ncRNA
112191	chr19	5672871	5673230	+	0	NA	Intergenic	Intergenic	7188	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
152111	chr22	19893321	19893680	+	0	NA	TTS (NM_001282512)	TTS (NM_001282512)	-38626	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
96017	chr17	39236651	39236750	+	0	NA	Intergenic	Intergenic	-1070	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
180198	chr5	1497421	1497780	+	0	NA	intron (NM_024830, intron 2 of 13)	intron (NM_024830, intron 2 of 13)	13256	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
204796	chr7	5630601	5631430	+	0	NA	intron (NM_207111, intron 15 of 16)	intron (NM_207111, intron 15 of 16)	38199	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
7081	chr1	32028571	32028730	+	0	NA	intron (NR_073498, intron 1 of 8)	AluY|SINE|Alu	14782	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
29710	chr10	72072021	72072650	+	0	NA	intron (NM_014767, intron 4 of 11)	intron (NM_014767, intron 4 of 11)	16216	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
12071	chr1	98897471	98897630	+	0	NA	intron (NM_001010861, intron 5 of 5)	intron (NM_001010861, intron 5 of 5)	-106726	NR_033940	100129620		NR_033940	ENSG00000232825	PLPPR5-AS1	-	PLPPR5 antisense RNA 1	ncRNA
27853	chr10	40614751	40614850	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1753245	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
210697	chr7	100576001	100576400	+	0	NA	promoter-TSS (NM_001289933)	promoter-TSS (NM_001289933)	-981	NM_001289933								
28084	chr10	43371101	43371700	+	0	NA	promoter-TSS (NM_001184963)	promoter-TSS (NM_001184963)	-236	NM_173160	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
66570	chr14	63436101	63436650	+	0	NA	intron (NR_104104, intron 2 of 12)	intron (NR_104104, intron 2 of 12)	71863	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
96834	chr17	41969421	41970480	+	0	NA	intron (NM_033133, intron 2 of 3)	intron (NM_033133, intron 2 of 3)	2153	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
111638	chr19	4174121	4174780	+	0	NA	3' UTR (NM_001193285, exon 7 of 7)	3' UTR (NM_001193285, exon 7 of 7)	7856	NM_001321064	51548		NM_016539	ENSG00000077463	SIRT6	SIR2L6|hSIRT6	sirtuin 6	protein-coding
45942	chr11	121324321	121324780	+	0	NA	Intergenic	Intergenic	31682	NM_001024956	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
118435	chr19	35845351	35846380	+	0	NA	intron (NM_004646, intron 12 of 28)	CpG-14305	6639	NM_004646	4868		NM_004646	ENSG00000161270	NPHS1	CNF|NPHN|nephrin	NPHS1 adhesion molecule, nephrin	protein-coding
53060	chr12	57646851	57647050	+	0	NA	Intergenic	L1PA2|LINE|L1	-13711	NM_001276469	2583		NM_001478	ENSG00000135454	B4GALNT1	GALGT|GALNACT|GalNAc-T|SPG26	beta-1,4-N-acetyl-galactosaminyltransferase 1	protein-coding
151164	chr21	44937901	44938300	+	0	NA	intron (NR_027129, intron 1 of 3)	intron (NR_027129, intron 1 of 3)	-1597	NM_001316988	85395		NM_058190	ENSG00000160256	SLX9	C21orf70|FAM207A|PRED56	SLX9 ribosome biogenesis factor	protein-coding
164821	chr3	70981351	70982030	+	0	NA	intron (NM_001244810, intron 14 of 20)	intron (NM_001244810, intron 14 of 20)	83234	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
83420	chr16	27231921	27233950	+	0	NA	intron (NM_145080, intron 5 of 7)	intron (NM_145080, intron 5 of 7)	28960	NM_001145348	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
212941	chr7	130936501	130936730	+	0	NA	Intergenic	Intergenic	23151	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
185484	chr5	131298101	131298750	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	34372	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
20755	chr1	200985471	200985630	+	0	NA	intron (NM_017596, intron 26 of 33)	intron (NM_017596, intron 26 of 33)	38164	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
182813	chr5	69093521	69094750	+	0	NA	5' UTR (NM_001251969, exon 1 of 3)	5' UTR (NM_001251969, exon 1 of 3)	121	NM_001251969	64924		NM_022902	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 member 5	protein-coding
46880	chr11	134014571	134014730	+	0	NA	Intergenic	Intergenic	-17622	NR_027276	100128239		NR_027276	ENSG00000204241	LINC02731	-	long intergenic non-protein coding RNA 2731	ncRNA
137590	chr2	197277371	197277700	+	0	NA	intron (NR_046837, intron 5 of 5)	MIR|SINE|MIR	24984	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
228826	chr9	112074371	112075130	+	0	NA	intron (NM_022486, intron 12 of 16)	intron (NM_022486, intron 12 of 16)	100547	NM_022486	64420		NM_022486	ENSG00000106868	SUSD1	-	sushi domain containing 1	protein-coding
167747	chr3	132044671	132044900	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-5179	NM_153429	131034		NM_130808	ENSG00000196353	CPNE4	COPN4|CPN4	copine 4	protein-coding
55666	chr12	107368371	107369030	+	0	NA	intron (NM_001347944, intron 1 of 14)	L1M5|LINE|L1	48112	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
199440	chr6	117478421	117479080	+	0	NA	Intergenic	MER31B|LTR|ERV1	-3854	NM_173674	285761		NM_173674	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
53095	chr12	57751601	57753100	+	0	NA	promoter-TSS (NM_000075)	promoter-TSS (NM_000075)	-40	NM_000075	1019		NM_000075	ENSG00000135446	CDK4	CMM3|PSK-J3	cyclin dependent kinase 4	protein-coding
35631	chr11	1832321	1833380	+	0	NA	Intergenic	Intergenic	-1577	NM_138567	90019		NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
135369	chr2	160434421	160434700	+	0	NA	intron (NM_016836, intron 1 of 13)	MER3|DNA|hAT-Charlie	-26678	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
177349	chr4	110085071	110085450	+	0	NA	intron (NM_024090, intron 2 of 3)	intron (NM_024090, intron 2 of 3)	113355	NM_001130721	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
170721	chr3	188049701	188050330	+	0	NA	Intergenic	Intergenic	-73608	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
31639	chr10	97392651	97393080	+	0	NA	intron (NM_015179, intron 4 of 33)	AluSx1|SINE|Alu	8475	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
205367	chr7	13910471	13911380	+	0	NA	intron (NM_001163147, intron 8 of 11)	intron (NM_001163147, intron 8 of 11)	75589	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
166157	chr3	111594671	111594830	+	0	NA	5' UTR (NM_024508, exon 2 of 2)	5' UTR (NM_024508, exon 2 of 2)	596	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
222644	chr8	141133971	141134330	+	0	NA	intron (NM_014957, intron 1 of 22)	intron (NM_014957, intron 1 of 22)	5561	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
71400	chr14	105525871	105527180	+	0	NA	promoter-TSS (NM_001331238)	promoter-TSS (NM_001331238)	-58	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
37293	chr11	14726601	14726800	+	0	NA	intron (NM_001363569, intron 1 of 15)	L2a|LINE|L2	82896	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
139352	chr2	219639051	219639750	+	0	NA	intron (NR_048551, intron 19 of 22)	intron (NR_048551, intron 19 of 22)	11770	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
125919	chr2	24984871	24985130	+	0	NA	intron (NR_034113, intron 1 of 2)	intron (NR_034113, intron 1 of 2)	12888	NR_034113	729723		NR_034113	ENSG00000224165	DNAJC27-AS1	-	DNAJC27 antisense RNA 1	ncRNA
33758	chr10	122496001	122496580	+	0	NA	intron (NM_002775, intron 3 of 8)	intron (NM_002775, intron 3 of 8)	34737	NM_002775	5654		NM_002775	ENSG00000166033	HTRA1	ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11	HtrA serine peptidase 1	protein-coding
71168	chr14	105035551	105035850	+	0	NA	Intergenic	AluSp|SINE|Alu	-14617	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
25598	chr10	8054301	8055300	+	0	NA	5' UTR (NM_002051, exon 1 of 6)	5' UTR (NM_002051, exon 1 of 6)	112	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
36496	chr11	6393521	6394430	+	0	NA	exon (NM_001365135, exon 4 of 5)	exon (NM_001365135, exon 4 of 5)	3501	NR_027400	6609		NM_000543	ENSG00000166311	SMPD1	ASM|ASMASE|NPD	sphingomyelin phosphodiesterase 1	protein-coding
141889	chr20	832201	832400	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1415	NM_001042353	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
32065	chr10	101085451	101085750	+	0	NA	Intergenic	Intergenic	19217	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
208295	chr7	66073171	66073400	+	0	NA	Intergenic	L2c|LINE|L2	-2534	NM_001024943	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
88469	chr16	85047101	85047830	+	0	NA	intron (NM_001286566, intron 1 of 11)	L1MD2|LINE|L1	-15747	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
116380	chr19	17942101	17942500	+	0	NA	intron (NM_138442, intron 2 of 4)	L2b|LINE|L2	7204	NM_138442	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
58029	chr12	124433571	124434330	+	0	NA	intron (NM_001077261, intron 10 of 47)	intron (NM_001077261, intron 10 of 47)	-96708	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
226357	chr9	69835751	69836350	+	0	NA	intron (NR_131757, intron 1 of 2)	Charlie18a|DNA|hAT-Charlie	15233	NR_131756	138255		NM_001010940	ENSG00000204711	CFAP95	C9orf135	cilia and flagella associated protein 95	protein-coding
148819	chr21	8378221	8378780	+	0	NA	intron (NR_003287, intron 2 of 2)	intron (NR_003287, intron 2 of 2)	-2165	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
75869	chr15	69712901	69713300	+	0	NA	Intergenic	Intergenic	120900	NR_126438	104472713		NR_126437	ENSG00000245750	PCAT29	-	prostate cancer associated transcript 29	ncRNA
71861	chr15	22265011	22266200	+	0	NA	intron (NR_033735, intron 1 of 2)	intron (NR_033735, intron 1 of 2)	6991	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
66621	chr14	63729471	63730050	+	0	NA	Intergenic	AluJb|SINE|Alu	-1695	NM_030791	81537		NM_030791	ENSG00000126821	SGPP1	SPP-1|SPPase1	sphingosine-1-phosphate phosphatase 1	protein-coding
135063	chr2	156434421	156434930	+	0	NA	promoter-TSS (NM_001083112)	promoter-TSS (NM_001083112)	-877	NM_001083112	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
177043	chr4	107757901	107758200	+	0	NA	Intergenic	Intergenic	-37816	NM_005443	9061		NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
134465	chr2	143226251	143226550	+	0	NA	intron (NM_018460, intron 4 of 13)	intron (NM_018460, intron 4 of 13)	96981	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
32090	chr10	101137971	101138130	+	0	NA	TTS (NM_001195517)	TTS (NM_001195517)	3216	NR_130724	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
77545	chr15	84749501	84750180	+	0	NA	intron (NM_014630, intron 1 of 10)	intron (NM_014630, intron 1 of 10)	1248	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
8376	chr1	40373071	40374000	+	0	NA	promoter-TSS (NM_022733)	promoter-TSS (NM_022733)	-192	NM_022733	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
121071	chr19	45877571	45878530	+	0	NA	Intergenic	Intergenic	8091	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
90448	chr17	1370751	1370850	+	0	NA	intron (NR_024058, intron 1 of 6)	AluYj4|SINE|Alu	29422	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
216037	chr8	9592321	9592880	+	0	NA	intron (NM_003747, intron 2 of 26)	intron (NM_003747, intron 2 of 26)	36688	NM_003747	8658		NM_003747	ENSG00000173273	TNKS	ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5	tankyrase	protein-coding
94589	chr17	29718701	29718900	+	0	NA	intron (NM_033389, intron 2 of 14)	MLT1F|LTR|ERVL-MaLR	42632	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
225012	chr9	33129701	33129900	+	0	NA	intron (NM_001378495, intron 2 of 5)	intron (NM_001378495, intron 2 of 5)	21108	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
186452	chr5	137666151	137666650	+	0	NA	intron (NM_017415, intron 6 of 14)	L2b|LINE|L2	-18751	NR_030588	100126343		NR_030588	ENSG00000216009	MIR874	MIRN874|hsa-mir-874|mir-874	microRNA 874	ncRNA
57105	chr12	121076371	121076530	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-37208	NM_198213	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
116234	chr19	17538821	17540530	+	0	NA	exon (NM_001321828, exon 7 of 14)	exon (NM_001321828, exon 7 of 14)	12406	NM_001321828	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
122629	chr19	49817901	49820680	+	0	NA	exon (NM_001378355, exon 3 of 18)	exon (NM_001378355, exon 3 of 18)	1001	NM_030973	81857		NM_030973	ENSG00000104973	MED25	ACID1|ARC92|BVSYS|CMT2B2|P78|PTOV2|TCBAP0758	mediator complex subunit 25	protein-coding
67953	chr14	74835701	74836100	+	0	NA	3' UTR (NM_019589, exon 21 of 21)	3' UTR (NM_019589, exon 21 of 21)	40245	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
56042	chr12	110449701	110451230	+	0	NA	promoter-TSS (NM_001278556)	promoter-TSS (NM_001278556)	-54	NM_001287222	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
62618	chr13	100586701	100587300	+	0	NA	intron (NM_001195087, intron 1 of 2)	intron (NM_001195087, intron 1 of 2)	1792	NM_001195087	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
92899	chr17	16447721	16448350	+	0	NA	intron (NM_001113567, intron 2 of 3)	intron (NM_001113567, intron 2 of 3)	6809	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
151505	chr21	46393551	46394050	+	0	NA	intron (NM_006031, intron 21 of 46)	intron (NM_006031, intron 21 of 46)	-65091	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
147239	chr20	57412021	57412980	+	0	NA	Intergenic	Intergenic	-19444	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
215700	chr8	1325271	1325430	+	0	NA	intron (NM_001346810, intron 3 of 14)	intron (NM_001346810, intron 3 of 14)	-22743	NR_111948	286083		NR_033895	ENSG00000275427	LOC286083	-	uncharacterized LOC286083	ncRNA
132338	chr2	105573571	105574130	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	36709	NR_038891	285000		NR_038891		LINC02946	RMEL1	long intergenic non-protein coding RNA 2946	ncRNA
113456	chr19	9857271	9857430	+	0	NA	exon (NM_001304348, exon 3 of 5)	exon (NM_001304348, exon 3 of 5)	825	NM_001304348	93145		NM_058164	ENSG00000105088	OLFM2	NOE2|NOELIN2|NOELIN2_V1|OlfC	olfactomedin 2	protein-coding
56554	chr12	116955671	116955900	+	0	NA	intron (NM_012174, intron 4 of 10)	intron (NM_012174, intron 4 of 10)	31552	NR_103809	100506551		NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA
57498	chr12	122095021	122095800	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	16654	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
134572	chr2	144230621	144231080	+	0	NA	intron (NM_001376321, intron 1 of 9)	intron (NM_001376321, intron 1 of 9)	6489	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
180166	chr5	1444301	1444900	+	0	NA	intron (NM_001044, intron 1 of 14).2	CpG	840	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
204768	chr7	5604871	5605550	+	0	NA	intron (NM_003088, intron 4 of 4)	intron (NM_003088, intron 4 of 4)	12394	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
95433	chr17	36121251	36121350	+	0	NA	Intergenic	L1PA8|LINE|L1	17473	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
26365	chr10	16195221	16195480	+	0	NA	Intergenic	Intergenic	-241593	NM_001261837	9317		NM_030664	ENSG00000165983	PTER	HPHRP|RPR-1	phosphotriesterase related	protein-coding
236034	chrX	55427171	55427330	+	0	NA	Intergenic	L1PA4|LINE|L1	-24245	NR_130469	100847061		NR_130469	ENSG00000266328	MIR4536-2	-	microRNA 4536-2	ncRNA
76098	chr15	72494901	72495400	+	0	NA	intron (NM_005744, intron 1 of 13)	L1MB7|LINE|L1	20820	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
30700	chr10	80534471	80534830	+	0	NA	intron (NR_120661, intron 1 of 1)	SVA_D|Retroposon|SVA	1292	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
68358	chr14	77715171	77715530	+	0	NA	intron (NR_052025, intron 3 of 4)	intron (NR_052025, intron 3 of 4)	7247	NM_031210	81892		NM_031210	ENSG00000119705	SLIRP	C14orf156|DC50|PD04872	SRA stem-loop interacting RNA binding protein	protein-coding
128029	chr2	47271921	47272650	+	0	NA	intron (NR_110207, intron 1 of 2)	intron (NR_110207, intron 1 of 2)	-63030	NR_001568	618		NR_001568	ENSG00000236824	BCYRN1	BC200|BC200a|LINC00004|NCRNA00004	brain cytoplasmic RNA 1	ncRNA
160074	chr3	18738971	18739430	+	0	NA	Intergenic	Intergenic	-293608	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
98788	chr17	48149321	48149580	+	0	NA	intron (NM_001075099, intron 11 of 12)	intron (NM_001075099, intron 11 of 12)	7061	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
205611	chr7	22154271	22154430	+	0	NA	intron (NM_001367600, intron 7 of 15)	intron (NM_001367600, intron 7 of 15)	39395	NM_001367601	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
236301	chrX	68304621	68304880	+	0	NA	intron (NM_002547, intron 2 of 24)	L1M4|LINE|L1	128745	NM_002547	4983		NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|MRXSBL|OPN1	oligophrenin 1	protein-coding
181442	chr5	40841121	40841630	+	0	NA	promoter-TSS (NM_032587)	promoter-TSS (NM_032587)	8	NM_032587	84674		NM_032587	ENSG00000132357	CARD6	CINCIN1	caspase recruitment domain family member 6	protein-coding
57604	chr12	122468551	122469050	+	0	NA	Intergenic	AluY|SINE|Alu	32132	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
108568	chr18	74993471	74993850	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	211853	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
26390	chr10	16948021	16948880	+	0	NA	intron (NM_001081, intron 35 of 66)	intron (NM_001081, intron 35 of 66)	-130996	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
238772	chrX	154359351	154359650	+	0	NA	exon (NM_001456, exon 24 of 47)	exon (NM_001456, exon 24 of 47)	15134	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
158306	chr22	50404721	50404980	+	0	NA	intron (NM_001351648, intron 3 of 22)	intron (NM_001351648, intron 3 of 22)	-2592	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
222258	chr8	133267621	133268080	+	0	NA	intron (NM_001258432, intron 1 of 13)	intron (NM_001258432, intron 1 of 13)	28840	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
77442	chr15	84231051	84231350	+	0	NA	Intergenic	Intergenic	-1032	NR_027001	388152		NM_203426	ENSG00000290689	GOLGA2P7	-	GOLGA2 pseudogene 7	pseudo
25102	chr10	3934721	3935630	+	0	NA	Intergenic	Intergenic	-55985	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
228922	chr9	113152401	113153280	+	0	NA	intron (NM_001860, intron 1 of 3)	intron (NM_001860, intron 1 of 3)	1833	NM_001860	1318		NM_001860	ENSG00000136867	SLC31A2	COPT2|CTR2|hCTR2	solute carrier family 31 member 2	protein-coding
85583	chr16	53493771	53494130	+	0	NA	intron (NM_001012398, intron 8 of 9)	intron (NM_001012398, intron 8 of 9)	9259	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
202921	chr6	160262371	160262630	+	0	NA	Intergenic	Intergenic	-3679	NM_003058	6582		NM_003058	ENSG00000112499	SLC22A2	OCT2	solute carrier family 22 member 2	protein-coding
195447	chr6	36977201	36977930	+	0	NA	intron (NM_001271641, intron 5 of 11)	intron (NM_001271641, intron 5 of 11)	8631	NM_001271641	23787		NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
1600	chr1	3640351	3640650	+	0	NA	intron (NM_017818, intron 3 of 11)	CpG	9603	NM_017818	49856		NM_017818	ENSG00000116213	WRAP73	WDR8	WD repeat containing, antisense to TP73	protein-coding
229232	chr9	114926401	114927000	+	0	NA	intron (NM_001244, intron 1 of 3)	L1ME4b|LINE|L1	3891	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
180007	chr5	996951	997340	+	0	NA	intron (NR_104614, intron 1 of 1)	MER72|LTR|ERV1	195	NR_104614	100506688		NM_001242737	ENSG00000215246	LINC02982	-	long intergenic non-protein coding RNA 2982	ncRNA
209360	chr7	76280401	76280880	+	0	NA	intron (NM_001291831, intron 11 of 15)	intron (NM_001291831, intron 11 of 15)	-22033	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
56235	chr12	111841551	111842950	+	0	NA	promoter-TSS (NR_152608)	promoter-TSS (NR_152608)	22	NM_001371485	8550		NM_003668	ENSG00000089022	MAPKAPK5	MAPKAP-K5|MK-5|MK5|NCFD|PRAK	MAPK activated protein kinase 5	protein-coding
192849	chr6	27171521	27172080	+	0	NA	Intergenic	AluY|SINE|Alu	24174	NR_036096	100422934		NR_036096	ENSG00000265565	MIR3143	mir-3143	microRNA 3143	ncRNA
206239	chr7	29156721	29157280	+	0	NA	intron (NM_001293069, intron 2 of 13)	intron (NM_001293069, intron 2 of 13)	10453	NM_001293069	1124		NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
136237	chr2	174602351	174602450	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-4169	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
217431	chr8	28419221	28420130	+	0	NA	Intergenic	Intergenic	-33215	NM_018660	55893		NM_018660	ENSG00000186918	ZNF395	HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14	zinc finger protein 395	protein-coding
69740	chr14	98925871	98926550	+	0	NA	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	214597	NR_161368	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
221347	chr8	123220551	123220950	+	0	NA	intron (NM_032847, intron 5 of 5)	intron (NM_032847, intron 5 of 5)	-4887	NR_039808	100616260		NR_039808	ENSG00000266324	MIR4663	-	microRNA 4663	ncRNA
190527	chr5	180623301	180623900	+	0	NA	intron (NM_001354989, intron 11 of 29)	intron (NM_001354989, intron 11 of 29)	26000	NM_001354989	2324		NM_002020	ENSG00000037280	FLT4	CHTD7|FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3	fms related receptor tyrosine kinase 4	protein-coding
135781	chr2	169738871	169739280	+	0	NA	intron (NM_001199290, intron 4 of 5)	(CCTCCC)n|Simple_repeat|Simple_repeat	5243	NM_144711	151230		NM_144711	ENSG00000213160	KLHL23	DITHP	kelch like family member 23	protein-coding
187564	chr5	142788701	142789050	+	0	NA	intron (NM_001349547, intron 1 of 21)	MIRb|SINE|MIR	17648	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
182286	chr5	57298171	57298670	+	0	NA	Intergenic	Intergenic	84346	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
71201	chr14	105069671	105070380	+	0	NA	Intergenic	Intergenic	-4595	NM_013345	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
75209	chr15	64837301	64838050	+	0	NA	Intergenic	L2b|LINE|L2	-4208	NM_001195059	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
95106	chr17	34797771	34797930	+	0	NA	Intergenic	Intergenic	163610	NM_006584	10693		NM_006584	ENSG00000132141	CCT6B	CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303	chaperonin containing TCP1 subunit 6B	protein-coding
215263	chr7	157002351	157003080	+	0	NA	Intergenic	CpG	-3592	NR_147077	105375606		NR_147077	ENSG00000235029	MNX1-AS2	-	MNX1 antisense RNA 2	ncRNA
84439	chr16	30398801	30399080	+	0	NA	exon (NM_152652, exon 2 of 2)	exon (NM_152652, exon 2 of 2)	3520	NM_001324494	197407		NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding
101672	chr17	68346271	68347330	+	0	NA	intron (NM_001352909, intron 3 of 10)	intron (NM_001352909, intron 3 of 10)	54665	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
221223	chr8	121248871	121249100	+	0	NA	Intergenic	Intergenic	-390361	NR_002835	594842		NR_002835		HAS2-AS1	HAS2-AS|HAS2AS|HASNT|NCRNA00077	HAS2 antisense RNA 1	ncRNA
98123	chr17	45851351	45851850	+	0	NA	intron (NR_024559, intron 1 of 1)	ERV3-16A3_LTR|LTR|ERVL	6719	NM_175882	162540		NM_175882	ENSG00000185294	SPPL2C	IMP5	signal peptide peptidase like 2C	protein-coding
147494	chr20	59162671	59162900	+	0	NA	intron (NM_001384354, intron 3 of 7)	L1PA17|LINE|L1	-1036	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
157764	chr22	46732121	46732380	+	0	NA	intron (NM_022766, intron 1 of 12)	intron (NM_022766, intron 1 of 12)	6002	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
7094	chr1	32074801	32075000	+	0	NA	intron (NM_018056, intron 1 of 8)	intron (NM_018056, intron 1 of 8)	1961	NM_001319678	55116		NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
170677	chr3	187740701	187741800	+	0	NA	intron (NM_001706, intron 1 of 9)	intron (NM_001706, intron 1 of 9)	4218	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
65667	chr14	52530821	52531600	+	0	NA	intron (NM_020784, intron 6 of 20)	L1MC2|LINE|L1	21295	NM_020784	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
165965	chr3	107953321	107954150	+	0	NA	Intergenic	Intergenic	70530	NR_015394	285205		NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
230793	chr9	129004271	129004630	+	0	NA	intron (NM_015354, intron 38 of 43)	MIRb|SINE|MIR	23881	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
190845	chr6	1611701	1612380	+	0	NA	exon (NM_001453, exon 1 of 1)	exon (NM_001453, exon 1 of 1)	2125	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
50640	chr12	48718421	48718930	+	0	NA	Intergenic	Intergenic	-1968	NM_001277842	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
190370	chr5	179745771	179746430	+	0	NA	intron (NM_014757, intron 1 of 4)	AluSx1|SINE|Alu	13278	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
153477	chr22	25563771	25565330	+	0	NA	promoter-TSS (NM_005160)	promoter-TSS (NM_005160)	-125	NM_005160	157		NM_005160	ENSG00000100077	GRK3	ADRBK2|BARK2	G protein-coupled receptor kinase 3	protein-coding
184803	chr5	111233951	111234950	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	10066	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
226728	chr9	75636771	75636930	+	0	NA	Intergenic	Intergenic	-253794	NM_001190482	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
228044	chr9	96015901	96016530	+	0	NA	non-coding (NR_164677, exon 20 of 20)	non-coding (NR_164677, exon 20 of 20)	5596	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
83221	chr16	23803471	23803830	+	0	NA	Intergenic	Intergenic	-32333	NM_212535	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
156419	chr22	41202521	41203050	+	0	NA	Intergenic	AluJb|SINE|Alu	-2527	NM_031488	83746		NM_031488	ENSG00000100395	L3MBTL2	H-l(3)mbt-l|L3MBT	L3MBTL histone methyl-lysine binding protein 2	protein-coding
33546	chr10	119290601	119291630	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	83544	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
37744	chr11	31815851	31816350	+	0	NA	promoter-TSS (NR_033971)	promoter-TSS (NR_033971)	-466	NR_033971	440034		NR_033971	ENSG00000281880	PAX6-AS1	DKFZp686K1684	PAX6 antisense RNA 1	ncRNA
116499	chr19	18144221	18144780	+	0	NA	exon (NM_015016, exon 22 of 27)	exon (NM_015016, exon 22 of 27)	-8663	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
107291	chr18	44725401	44726300	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	24975	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
235115	chrX	40663101	40663700	+	0	NA	intron (NM_004229, intron 25 of 30)	MLT1H|LTR|ERVL-MaLR	-15839	NM_001330455	159013		NM_144970	ENSG00000185753	CXorf38	-	chromosome X open reading frame 38	protein-coding
22648	chr1	223735651	223735950	+	0	NA	intron (NM_001748, intron 2 of 20)	AluSg|SINE|Alu	23261	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
161147	chr3	39030821	39031100	+	0	NA	intron (NR_164473, intron 2 of 2)	intron (NR_164473, intron 2 of 2)	20984	NR_164473	11280		NM_014139	ENSG00000168356	SCN11A	FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2	sodium voltage-gated channel alpha subunit 11	protein-coding
47726	chr12	6464951	6465050	+	0	NA	intron (NM_016830, intron 3 of 4)	intron (NM_016830, intron 3 of 4)	5677	NR_123717	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
7404	chr1	32938301	32938700	+	0	NA	exon (NM_153341, exon 8 of 9)	exon (NM_153341, exon 8 of 9)	26309	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
154101	chr22	31080551	31081800	+	0	NA	promoter-TSS (NM_006932)	promoter-TSS (NM_006932)	-143	NR_168474	6525		NM_006932	ENSG00000183963	SMTN	-	smoothelin	protein-coding
43524	chr11	82682271	82682500	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	51479	NM_175885	220382		NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
16083	chr1	153534171	153534400	+	0	NA	TTS (NM_014624)	TTS (NM_014624)	1706	NM_014624	6277		NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA|S10A6	S100 calcium binding protein A6	protein-coding
97665	chr17	44212721	44212980	+	0	NA	exon (NM_014233, exon 7 of 21)	exon (NM_014233, exon 7 of 21)	-5011	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
219707	chr8	80960521	80960780	+	0	NA	Intergenic	Intergenic	-85869	NM_001033723	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
160938	chr3	36899471	36899630	+	0	NA	intron (NM_014831, intron 2 of 22)	AluJr|SINE|Alu	45504	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
8550	chr1	41240071	41240650	+	0	NA	intron (NM_012236, intron 1 of 14)	intron (NM_012236, intron 1 of 14)	1946	NM_001350667	22955		NM_012236	ENSG00000010803	SCMH1	Scml3	Scm polycomb group protein homolog 1	protein-coding
165851	chr3	105862171	105862880	+	0	NA	intron (NM_001321811, intron 2 of 16)	L2c|LINE|L2	5066	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
133523	chr2	120220851	120221150	+	0	NA	3' UTR (NM_024121, exon 1 of 1)	3' UTR (NM_024121, exon 1 of 1)	2400	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
128323	chr2	54667301	54667700	+	0	NA	intron (NM_003128, intron 34 of 35)	intron (NM_003128, intron 34 of 35)	-57512	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
23687	chr1	231425101	231425300	+	0	NA	Intergenic	Intergenic	-2913	NM_001377260	54583		NM_022051	ENSG00000135766	EGLN1	C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia inducible factor 1	protein-coding
198140	chr6	90472421	90473140	+	0	NA	Intergenic	Intergenic	114292	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
236978	chrX	101403251	101403850	+	0	NA	intron (NR_164783, intron 2 of 7)	AluSq2|SINE|Alu	4375	NM_000169	2717		NM_000169	ENSG00000102393	GLA	GALA	galactosidase alpha	protein-coding
113571	chr19	10260271	10260830	+	0	NA	TTS (NM_015956)	TTS (NM_015956)	8336	NM_015956	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
128247	chr2	54556221	54557130	+	0	NA	intron (NM_003128, intron 2 of 35)	(TG)n|Simple_repeat|Simple_repeat	-1719	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
203070	chr6	166285821	166286330	+	0	NA	Intergenic	Intergenic	22317	NM_175922	285800		NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
53979	chr12	74803371	74803530	+	0	NA	Intergenic	AluSg|SINE|Alu	265615	NM_001136262	552889		NM_001136262	ENSG00000253719	ATXN7L3B	lnc-SCA7	ataxin 7 like 3B	protein-coding
157663	chr22	46254421	46254750	+	0	NA	Intergenic	Intergenic	-4292	NM_207327	150383		NM_207327	ENSG00000205643	CDPF1	C22orf40|CDKN1A	cysteine rich DPF motif domain containing 1	protein-coding
10381	chr1	64967721	64968050	+	0	NA	promoter-TSS (NM_001320923)	promoter-TSS (NM_001320923)	-949	NM_001320923	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
14655	chr1	145690501	145691130	+	0	NA	intron (NM_001371361, intron 1 of 7)	intron (NM_001371361, intron 1 of 7)	16553	NM_001371361	5174		NM_002614	ENSG00000174827	PDZK1	CAP70|CLAMP|NHERF-3|NHERF3|PDZD1	PDZ domain containing 1	protein-coding
187105	chr5	140363171	140364100	+	0	NA	intron (NM_001258426, intron 8 of 21)	intron (NM_001258426, intron 8 of 21)	3441	NM_001258426	83697		NM_031467	ENSG00000113073	SLC4A9	AE4	solute carrier family 4 member 9	protein-coding
68196	chr14	76810851	76811480	+	0	NA	intron (NM_001370748, intron 1 of 9)	MER20|DNA|hAT-Charlie	1717	NM_001370746	23357		NM_015305	ENSG00000013523	ANGEL1	Ccr4e|KIAA0759	angel homolog 1	protein-coding
136010	chr2	172431571	172432680	+	0	NA	intron (NM_001365530, intron 1 of 25)	CR1_Mam|LINE|CR1	4539	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
103918	chr17	79823201	79823400	+	0	NA	promoter-TSS (NR_146504)	promoter-TSS (NR_146504)	-152	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
17473	chr1	156714601	156714800	+	0	NA	Intergenic	AluSg|SINE|Alu	-8884	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
49643	chr12	28253051	28253780	+	0	NA	intron (NM_001352086, intron 3 of 15)	HAL1|LINE|L1	-62677	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
65378	chr14	50670821	50671080	+	0	NA	Intergenic	Intergenic	-2644	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
97690	chr17	44311771	44311930	+	0	NA	intron (NM_001144825, intron 1 of 10)	intron (NM_001144825, intron 1 of 10)	3249	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
108596	chr18	75221701	75222300	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	11203	NM_001308210	10194		NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding
29170	chr10	68829501	68830100	+	0	NA	intron (NM_001130160, intron 1 of 2)	intron (NM_001130160, intron 1 of 2)	2263	NM_001130160	219736		NM_152709	ENSG00000165730	STOX1	C10orf24	storkhead box 1	protein-coding
16276	chr1	154114951	154115530	+	0	NA	intron (NM_207308, intron 12 of 39)	intron (NM_207308, intron 12 of 39)	-10648	NR_049883	100847024		NR_049883	ENSG00000263987	MIR5698	-	microRNA 5698	ncRNA
19258	chr1	172696471	172696630	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	37447	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
119135	chr19	39372871	39373230	+	0	NA	intron (NM_001384588, intron 5 of 13)	intron (NM_001384588, intron 5 of 13)	18056	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
45812	chr11	119348151	119348450	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-1595	NM_015645	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
17325	chr1	156470651	156471000	+	0	NA	intron (NM_001271629, intron 8 of 10)	MIR|SINE|MIR	19862	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
144100	chr20	33814001	33814650	+	0	NA	intron (NM_176812, intron 1 of 4)	intron (NM_176812, intron 1 of 4)	2977	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
230694	chr9	128732351	128732780	+	0	NA	intron (NM_001375958, intron 15 of 15)	AluSz|SINE|Alu	8103	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
21624	chr1	206583271	206584350	+	0	NA	intron (NM_182665, intron 2 of 4)	intron (NM_182665, intron 2 of 4)	26646	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
175759	chr4	77764721	77765230	+	0	NA	intron (NM_144571, intron 4 of 11)	MER41A|LTR|ERV1	54089	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
59244	chr13	23903221	23904500	+	0	NA	Intergenic	CpG	-6358	NR_104426	387911		NM_001007537	ENSG00000205863	C1QTNF9B	CTRP9B	C1q and TNF related 9B	protein-coding
46355	chr11	125904001	125905130	+	0	NA	promoter-TSS (NM_013264)	promoter-TSS (NM_013264)	57	NM_013264	29118		NM_013264	ENSG00000109832	DDX25	GRTH	DEAD-box helicase 25	protein-coding
95939	chr17	38959301	38959800	+	0	NA	intron (NM_001008777, intron 3 of 10)	AluSz|SINE|Alu	7853	NM_001008777	494188		NM_001008777	ENSG00000204952	FBXO47	-	F-box protein 47	protein-coding
91931	chr17	7328771	7330880	+	0	NA	promoter-TSS (NM_001005408)	promoter-TSS (NM_001005408)	-490	NM_001005408	84461		NM_032442	ENSG00000215041	NEURL4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding
217368	chr8	27992601	27992830	+	0	NA	promoter-TSS (NM_173833)	promoter-TSS (NM_173833)	-42	NM_173833	286133		NM_173833	ENSG00000168079	SCARA5	NET33|Tesr	scavenger receptor class A member 5	protein-coding
200388	chr6	134288151	134288250	+	0	NA	intron (NM_001143676, intron 1 of 13)	intron (NM_001143676, intron 1 of 13)	29858	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
158581	chr3	4633201	4633650	+	0	NA	intron (NM_002222, intron 5 of 57)	intron (NM_002222, intron 5 of 57)	118165	NR_004428	100126791		NR_004428	ENSG00000235947	EGOT	EGO|NCRNA00190	eosinophil granule ontogeny transcript	ncRNA
72311	chr15	31217921	31219030	+	0	NA	intron (NR_135834, intron 1 of 1)	AluJo|SINE|Alu	2454	NR_135834	102725022		NR_135834		LINC02352	-	long intergenic non-protein coding RNA 2352	ncRNA
136169	chr2	174393701	174393900	+	0	NA	intron (NM_004882, intron 1 of 9)	L1MA10|LINE|L1	1912	NM_004882	9541		NM_004882	ENSG00000138433	CIR1	CIR	corepressor interacting with RBPJ, CIR1	protein-coding
41587	chr11	66344471	66345750	+	0	NA	promoter-TSS (NM_001024957)	promoter-TSS (NM_001024957)	-6	NM_001024957	25855		NM_015399	ENSG00000174744	BRMS1	-	BRMS1 transcriptional repressor and anoikis regulator	protein-coding
35511	chr11	1546071	1547610	+	0	NA	Intergenic	CpG	25431	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
14214	chr1	143194721	143195430	+	0	NA	Intergenic	Intergenic	227517	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
31519	chr10	96765471	96766000	+	0	NA	Intergenic	MamRep38|DNA|hAT	15469	NR_026712	728658		NR_026712	ENSG00000236552	RPL13AP5	RPL13A_8_1086|bA196N24.2	ribosomal protein L13a pseudogene 5	pseudo
71886	chr15	22472671	22472830	+	0	NA	Intergenic	Intergenic	9624	NR_036470	100132101		NR_036470		HERC2P7	-	HERC2 pseudogene 7	pseudo
148669	chr21	6128771	6129130	+	0	NA	Intergenic	L1ME1|LINE|L1	17819	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
206167	chr7	28037021	28037550	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-143172	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
13105	chr1	111623771	111623930	+	0	NA	intron (NM_001291896, intron 1 of 7)	intron (NM_001291896, intron 1 of 7)	-3452	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
192876	chr6	27470121	27470550	+	0	NA	intron (NM_001318893, intron 2 of 5)	L3|LINE|CR1	2563	NM_001318892	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
165357	chr3	89114421	89114750	+	0	NA	intron (NM_005233, intron 1 of 16)	CpG	6964	NM_005233	2042		NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
92422	chr17	8393471	8394180	+	0	NA	intron (NM_001146684, intron 2 of 2)	intron (NM_001146684, intron 2 of 2)	4002	NM_001146684	643904		NM_001146684	ENSG00000189051	RNF222	-	ring finger protein 222	protein-coding
141510	chr2	241203721	241204450	+	0	NA	intron (NM_001370694, intron 9 of 24)	intron (NM_001370694, intron 9 of 24)	15408	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
151511	chr21	46423101	46425200	+	0	NA	intron (NM_006031, intron 32 of 46)	intron (NM_006031, intron 32 of 46)	-34741	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
111591	chr19	4087001	4087830	+	0	NA	Intergenic	AluSg|SINE|Alu	-20516	NM_015898	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
201090	chr6	142819221	142820200	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	125466	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
95288	chr17	35525251	35526150	+	0	NA	intron (NM_001363830, intron 1 of 4)	L1PA7|LINE|L1	12161	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
197428	chr6	73645301	73646030	+	0	NA	intron (NM_001382631, intron 1 of 11)	AluY|SINE|Alu	8327	NM_001382635	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
56313	chr12	112559901	112560100	+	0	NA	Intergenic	MER41B|LTR|ERV1	-15236	NM_001347952	22895		NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding
19778	chr1	182260571	182260730	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	53411	NR_104175	400799		NR_104175		LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
67459	chr14	70820751	70821050	+	0	NA	Intergenic	AluJr4|SINE|Alu	-11387	NM_033141	4293		NM_033141	ENSG00000006432	MAP3K9	MEKK9|MLK1|PRKE1	mitogen-activated protein kinase kinase kinase 9	protein-coding
150109	chr21	37455021	37455830	+	0	NA	intron (NM_101395, intron 3 of 12)	intron (NM_101395, intron 3 of 12)	35126	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
7938	chr1	37544051	37544430	+	0	NA	intron (NM_024700, intron 2 of 3)	AluSg4|SINE|Alu	10053	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
74192	chr15	55742521	55743250	+	0	NA	exon (NM_173814, exon 1 of 20)	exon (NM_173814, exon 1 of 20)	267	NM_173814	283659		NM_173814	ENSG00000166450	PRTG	IGDCC5	protogenin	protein-coding
38846	chr11	47326271	47326830	+	0	NA	exon (NM_001376597, exon 33 of 36)	exon (NM_001376597, exon 33 of 36)	26152	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
148580	chr21	5052171	5052330	+	0	NA	Intergenic	(ATCC)n|Simple_repeat|Simple_repeat	29696	NM_001283050	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
134888	chr2	148957021	148957300	+	0	NA	intron (NM_004522, intron 10 of 25)	intron (NM_004522, intron 10 of 25)	9285	NR_111932	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
16756	chr1	155326171	155327080	+	0	NA	exon (NM_001278230, exon 6 of 8)	exon (NM_001278230, exon 6 of 8)	2118	NM_001278230	23623		NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding
151836	chr22	18510821	18511080	+	0	NA	Intergenic	Intergenic	7211	NM_001355479	728226		NM_001355479	ENSG00000274252	GGTLC3	GGT	gamma-glutamyltransferase light chain family member 3	protein-coding
13498	chr1	114726371	114726730	+	0	NA	intron (NM_001242891, intron 14 of 20)	intron (NM_001242891, intron 14 of 20)	-9779	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
61877	chr13	77235701	77235980	+	0	NA	intron (NM_015057, intron 17 of 82)	intron (NM_015057, intron 17 of 82)	91254	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
236586	chrX	73212521	73212780	+	0	NA	3' UTR (NM_021963, exon 1 of 1)	3' UTR (NM_021963, exon 1 of 1)	2201	NM_021963	4674		NM_021963	ENSG00000186462	NAP1L2	BPX	nucleosome assembly protein 1 like 2	protein-coding
120740	chr19	45385251	45385950	+	0	NA	exon (NM_006663, exon 11 of 13)	exon (NM_006663, exon 11 of 13)	-15013	NM_001130867	2068		NM_000400	ENSG00000104884	ERCC2	COFS2|EM9|TFIIH|TTD|TTD1|XPD	ERCC excision repair 2, TFIIH core complex helicase subunit	protein-coding
147006	chr20	53573771	53574430	+	0	NA	intron (NR_110051, intron 5 of 5)	MER2|DNA|TcMar-Tigger	19739	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
50011	chr12	42363051	42363580	+	0	NA	intron (NM_201515, intron 5 of 10)	intron (NM_201515, intron 5 of 10)	31517	NM_001364834	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
141767	chr2	242009951	242010500	+	0	NA	intron (NR_110220, intron 3 of 3)	CpG	9016	NR_149023	285097		NM_178530	ENSG00000280119	LOC285097	-	uncharacterized FLJ38379	ncRNA
81760	chr16	11496401	11496800	+	0	NA	intron (NM_001370704, intron 10 of 66)	intron (NM_001370704, intron 10 of 66)	30647	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
111417	chr19	3778701	3779100	+	0	NA	intron (NM_139355, intron 12 of 13)	MIRc|SINE|MIR	-6672	NM_032753	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
151497	chr21	46353571	46353730	+	0	NA	intron (NM_006031, intron 10 of 46)	intron (NM_006031, intron 10 of 46)	28983	NM_001315529	5116		NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
48824	chr12	12322901	12323280	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	27152	NM_001363613	54682		NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
209113	chr7	74956201	74956400	+	0	NA	Intergenic	AluSx|SINE|Alu	-8405	NM_001145064	729438		NM_001145064	ENSG00000274070	CASTOR2	GATSL1|GATSL2	cytosolic arginine sensor for mTORC1 subunit 2	protein-coding
76328	chr15	74402751	74403930	+	0	NA	Intergenic	MIR3|SINE|MIR	8092	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
18007	chr1	160556251	160556550	+	0	NA	intron (NM_001184882, intron 1 of 5)	MIRb|SINE|MIR	23096	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
22426	chr1	220137151	220137700	+	0	NA	intron (NM_018060, intron 16 of 22)	intron (NM_018060, intron 16 of 22)	-19184	NR_029711	406969		NR_029711	ENSG00000207624	MIR194-1	MIRN194-1|mir-194-1	microRNA 194-1	ncRNA
228450	chr9	99838251	99838550	+	0	NA	intron (NM_173200, intron 6 of 8)	intron (NM_173200, intron 6 of 8)	16515	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
143445	chr20	30299951	30300780	+	0	NA	Intergenic	CpG	-13828	NR_145432	400841		NM_207470		LINC01597	-	long intergenic non-protein coding RNA 1597	ncRNA
78709	chr15	98311671	98311900	+	0	NA	Intergenic	Intergenic	19773	NR_146566	105371011		NR_146566		LINC02351	-	long intergenic non-protein coding RNA 2351	ncRNA
157286	chr22	44193451	44193850	+	0	NA	intron (NM_022141, intron 8 of 13)	intron (NM_022141, intron 8 of 13)	12725	NM_022141	64098		NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding
152564	chr22	21046771	21047130	+	0	NA	intron (NR_110991, intron 1 of 8)	AluSx1|SINE|Alu	1004	NR_027006	400891		NM_001013675	ENSG00000187905	LRRC74B	-	leucine rich repeat containing 74B	protein-coding
124478	chr19	58552901	58553800	+	0	NA	intron (NM_014453, intron 2 of 5)	intron (NM_014453, intron 2 of 5)	1755	NM_014453	27243		NM_014453	ENSG00000130724	CHMP2A	BC-2|BC2|CHMP2|VPS2|VPS2A	charged multivesicular body protein 2A	protein-coding
81795	chr16	11537351	11538280	+	0	NA	Intergenic	AluSx1|SINE|Alu	-10568	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
166012	chr3	108220701	108220930	+	0	NA	intron (NM_018010, intron 1 of 10)	MER5A|DNA|hAT-Charlie	1609	NM_018010	55081		NM_018010	ENSG00000114446	IFT57	ESRRBL1|HIPPI|MHS4R2|OFD18	intraflagellar transport 57	protein-coding
99727	chr17	50910101	50911200	+	0	NA	Intergenic	Intergenic	-42672	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
24299	chr1	236546871	236547550	+	0	NA	intron (NM_201544, intron 9 of 9)	intron (NM_201544, intron 9 of 9)	-22702	NR_034040	100287902		NR_034040	ENSG00000223776	LGALS8-AS1	-	LGALS8 antisense RNA 1	ncRNA
118487	chr19	35928421	35929000	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-7664	NM_024509	79414		NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
139184	chr2	219220071	219221450	+	0	NA	exon (NM_001077198, exon 15 of 16)	exon (NM_001077198, exon 15 of 16)	-1802	NM_001349828	10058		NM_005689	ENSG00000115657	ABCB6	ABC|LAN|MTABC3|PRP|umat	ATP binding cassette subfamily B member 6 (LAN blood group)	protein-coding
204925	chr7	6170101	6170900	+	0	NA	intron (NM_004227, intron 9 of 12)	CpG	1637	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
88963	chr16	87856071	87857130	+	0	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	2704	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
26020	chr10	12323321	12323580	+	0	NA	Intergenic	Intergenic	-26097	NM_020397	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
19941	chr1	184753901	184755930	+	0	NA	promoter-TSS (NM_025191)	promoter-TSS (NM_025191)	-57	NM_025191	80267		NM_025191	ENSG00000116406	EDEM3	C1orf22|CDG2V	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
193088	chr6	28862321	28862800	+	0	NA	intron (NR_033379, intron 1 of 1)	intron (NR_033379, intron 1 of 1)	1117	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
7340	chr1	32741351	32742680	+	0	NA	exon (NM_020888, exon 1 of 7)	exon (NM_020888, exon 1 of 7)	185	NM_020888	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
54911	chr12	96108321	96108950	+	0	NA	Intergenic	Intergenic	-65115	NM_001256643	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
4728	chr1	23345771	23346000	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1601	NM_001102397	10236		NM_005826	ENSG00000125944	HNRNPR	HNRPR|NEDDFSB|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding
103692	chr17	78809951	78810480	+	0	NA	intron (NR_169585, intron 13 of 19)	AluJb|SINE|Alu	-27873	NM_004762	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
62538	chr13	99604921	99605180	+	0	NA	Intergenic	MER96B|DNA|hAT-Tip100	-1614	NM_206808	171425		NM_206808	ENSG00000125246	CLYBL	CLB	citramalyl-CoA lyase	protein-coding
163238	chr3	50269671	50270880	+	0	NA	exon (NM_001290060, exon 2 of 17)	exon (NM_001290060, exon 2 of 17)	1114	NM_001290061	7869		NM_004636	ENSG00000012171	SEMA3B	LUCA-1|SEMA5|SEMAA|SemA|semaV	semaphorin 3B	protein-coding
196933	chr6	52417621	52417880	+	0	NA	Intergenic	Intergenic	-2592	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
94050	chr17	27348971	27350050	+	0	NA	Intergenic	CpG	55396	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
17060	chr1	156101821	156102630	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	-12486	NM_170708	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
100218	chr17	59209251	59210530	+	0	NA	promoter-TSS (NM_018149)	promoter-TSS (NM_018149)	-120	NM_018149	55181		NM_018149	ENSG00000167447	SMG8	ALKUS|C17orf71	SMG8 nonsense mediated mRNA decay factor	protein-coding
164758	chr3	69086111	69086900	+	0	NA	intron (NM_006407, intron 1 of 2)	intron (NM_006407, intron 1 of 2)	1568	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
216085	chr8	10937901	10938100	+	0	NA	intron (NM_173683, intron 1 of 2)	L1PA2|LINE|L1	97302	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
180834	chr5	32536251	32536630	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-49117	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
14722	chr1	145965651	145965750	+	0	NA	intron (NM_032305, intron 1 of 7)	L3|LINE|CR1	1010	NM_032305	84265		NM_032305	ENSG00000121851	POLR3GL	RPC32HOM|SOFM|flj32422	RNA polymerase III subunit GL	protein-coding
8142	chr1	39330251	39331450	+	0	NA	intron (NM_012090, intron 35 of 92)	AluSx3|SINE|Alu	-78223	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
5106	chr1	24858621	24858880	+	0	NA	Intergenic	AluJb|SINE|Alu	60666	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
12263	chr1	100455321	100456200	+	0	NA	intron (NM_001319210, intron 8 of 16)	intron (NM_001319210, intron 8 of 16)	-82379	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
15340	chr1	149922451	149922950	+	0	NA	TTS (NM_005850)	TTS (NM_005850)	-4856	NM_014849	9900		NM_014849	ENSG00000159164	SV2A	DEE113|SLC22B1|SV2	synaptic vesicle glycoprotein 2A	protein-coding
99915	chr17	56939901	56940300	+	0	NA	intron (NM_004645, intron 6 of 6)	intron (NM_004645, intron 6 of 6)	20950	NM_004645	8161		NM_004645	ENSG00000121058	COIL	CLN80|p80-coilin	coilin	protein-coding
17095	chr1	156143351	156144190	+	0	NA	Intergenic	L2a|LINE|L2	-6174	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
182764	chr5	68300321	68300850	+	0	NA	3' UTR (NM_181504, exon 10 of 10)	3' UTR (NM_181504, exon 10 of 10)	8008	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
221841	chr8	128230871	128231230	+	0	NA	Intergenic	L2a|LINE|L2	80934	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
62769	chr13	108266421	108266750	+	0	NA	Intergenic	Intergenic	-3044	NM_001145645	10673		NM_006573	ENSG00000102524	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4	TNF superfamily member 13b	protein-coding
79303	chr16	550901	551630	+	0	NA	intron (NM_005632, intron 7 of 13)	intron (NM_005632, intron 7 of 13)	7988	NR_036137	100423037		NR_036137	ENSG00000266235	MIR3176	mir-3176	microRNA 3176	ncRNA
170858	chr3	191709151	191709250	+	0	NA	Intergenic	AluY|SINE|Alu	248037	NM_001083308	152138		NM_001083308	ENSG00000253548	PYDC2	POP2|cPOP2	pyrin domain containing 2	protein-coding
175931	chr4	80362601	80362850	+	0	NA	intron (NM_001206997, intron 1 of 6)	intron (NM_001206997, intron 1 of 6)	26995	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
217396	chr8	28346851	28347900	+	0	NA	3' UTR (NM_018660, exon 10 of 10)	3' UTR (NM_018660, exon 10 of 10)	8728	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
113820	chr19	10606871	10608030	+	0	NA	intron (NM_001145056, intron 1 of 21)	AluJo|SINE|Alu	4995	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
209736	chr7	87186221	87186700	+	0	NA	intron (NR_024550, intron 12 of 17)	AluJo|SINE|Alu	33272	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
225157	chr9	33812821	33813080	+	0	NA	Intergenic	AluSx|SINE|Alu	-4210	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
90950	chr17	2650151	2650650	+	0	NA	intron (NM_000430, intron 2 of 10)	AluSz|SINE|Alu	42519	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
236807	chrX	79160471	79160630	+	0	NA	intron (NM_032553, intron 2 of 2)	intron (NM_032553, intron 2 of 2)	15862	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
42000	chr11	67395521	67395980	+	0	NA	exon (NM_001243224, exon 3 of 8)	exon (NM_001243224, exon 3 of 8)	2445	NM_001243224	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
181711	chr5	50666301	50667000	+	0	NA	promoter-TSS (NM_001331028)	promoter-TSS (NM_001331028)	13	NM_001178056	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
106809	chr18	23969921	23971130	+	0	NA	Intergenic	MER74A|LTR|ERVL	-22362	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
149218	chr21	25464171	25465030	+	0	NA	Intergenic	Intergenic	-32899	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
21977	chr1	209602071	209602260	+	0	NA	intron (NM_020439, intron 3 of 12)	MER20|DNA|hAT-Charlie	18451	NM_020439	57172		NM_020439	ENSG00000008118	CAMK1G	CLICK3|CLICKIII|VWS1	calcium/calmodulin dependent protein kinase IG	protein-coding
34859	chr11	332571	333200	+	0	NA	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-12025	NM_021034	10410		NM_021034	ENSG00000142089	IFITM3	1-8U|DSPA2b|IP15	interferon induced transmembrane protein 3	protein-coding
55681	chr12	107468401	107468600	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	-112374	NM_001017523	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
51689	chr12	53102521	53103570	+	0	NA	promoter-TSS (NM_003578)	promoter-TSS (NM_003578)	-441	NM_003578	8435		NM_003578	ENSG00000167780	SOAT2	ACACT2|ACAT2|ARGP2	sterol O-acyltransferase 2	protein-coding
178544	chr4	151098571	151100900	+	0	NA	intron (NM_001267699, intron 1 of 2)	CpG	107	NM_001006	6189		NM_001006	ENSG00000145425	RPS3A	FTE1|MFTL|S3A|eS1	ribosomal protein S3A	protein-coding
188781	chr5	157741401	157741700	+	0	NA	TTS (NM_001317824)	TTS (NM_001317824)	-2162	NM_173491	134353		NM_173491	ENSG00000155858	LSM11	AGS8	LSM11, U7 small nuclear RNA associated	protein-coding
129802	chr2	71420151	71420250	+	0	NA	intron (NM_014497, intron 21 of 27)	FLAM_C|SINE|Alu	-33361	NM_001130979	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
76964	chr15	78150971	78151150	+	0	NA	intron (NM_005530, intron 1 of 10)	intron (NM_005530, intron 1 of 10)	1698	NM_005530	3419		NM_005530	ENSG00000166411	IDH3A	RP90	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein-coding
152105	chr22	19886671	19887300	+	0	NA	intron (NR_147957, intron 10 of 16)	intron (NR_147957, intron 10 of 16)	-32111	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
182663	chr5	67215451	67216580	+	0	NA	Intergenic	Intergenic	-19216	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
215686	chr8	789321	789580	+	0	NA	intron (NM_001346810, intron 1 of 14)	MSTA|LTR|ERVL-MaLR	50902	NR_134292	401442		NR_134292	ENSG00000282375	LOC401442	-	uncharacterized LOC401442	ncRNA
73483	chr15	43691451	43691780	+	0	NA	Intergenic	Intergenic	-1171	NM_001321927	548596		NM_001015001	ENSG00000223572	CKMT1A	CKMT1|U-MtCK|mia-CK	creatine kinase, mitochondrial 1A	protein-coding
46406	chr11	126332071	126332830	+	0	NA	intron (NM_014026, intron 3 of 5)	intron (NM_014026, intron 3 of 5)	23137	NR_033839	399972		NR_033839		GSEC	DCPS-AS1|ST3GAL4-AS1	G-quadruplex forming sequence containing lncRNA	ncRNA
115180	chr19	14435101	14435600	+	0	NA	intron (NM_002741, intron 1 of 21)	intron (NM_002741, intron 1 of 21)	2044	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
47203	chr12	820221	821050	+	0	NA	intron (NM_018979, intron 2 of 27)	AluJr|SINE|Alu	67712	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
179762	chr5	261851	262400	+	0	NA	Intergenic	CpG	9399	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
74004	chr15	52111851	52113130	+	0	NA	exon (NM_001306168, exon 1 of 2)	exon (NM_001306168, exon 1 of 2)	285	NM_020396	10017		NM_020396	ENSG00000137875	BCL2L10	BCL-B|Boo|Diva|bcl2-L-10	BCL2 like 10	protein-coding
223043	chr8	143370721	143370980	+	0	NA	intron (NM_052924, intron 1 of 14)	intron (NM_052924, intron 1 of 14)	1974	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
195837	chr6	41373121	41373380	+	0	NA	Intergenic	CpG	37642	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
163149	chr3	50149601	50150480	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-5018	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
85544	chr16	53128671	53129130	+	0	NA	intron (NM_001308319, intron 1 of 38)	intron (NM_001308319, intron 1 of 38)	-2112	NM_001352127	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
14526	chr1	144845671	144846300	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	127814	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
151479	chr21	46254901	46255100	+	0	NA	intron (NM_003906, intron 17 of 27)	L2a|LINE|L2	25769	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
66975	chr14	66403171	66403330	+	0	NA	Intergenic	Intergenic	-83121	NR_110307	440184		NM_001004331	ENSG00000196553	CCDC196	C14orf53|LINC00238|NCRNA00238	coiled-coil domain containing 196	protein-coding
65868	chr14	55066921	55067950	+	0	NA	3' UTR (NM_144578, exon 4 of 4)	3' UTR (NM_144578, exon 4 of 4)	15788	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
79061	chr16	141051	141750	+	0	NA	Intergenic	Intergenic	-2702	NM_001243249	8131		NM_012075	ENSG00000103148	NPRL3	C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11	NPR3 like, GATOR1 complex subunit	protein-coding
108825	chr18	79014501	79014700	+	0	NA	Intergenic	Intergenic	34325	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
214727	chr7	151026001	151026530	+	0	NA	Intergenic	L3b|LINE|CR1	-1766	NR_073169	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
159121	chr3	12612251	12612850	+	0	NA	intron (NR_148942, intron 2 of 16)	AluSq2|SINE|Alu	50958	NM_001354690	5894		NM_002880	ENSG00000132155	RAF1	CMD1NN|CRAF|NS5|Raf-1|c-Raf	Raf-1 proto-oncogene, serine/threonine kinase	protein-coding
163092	chr3	50103971	50104130	+	0	NA	intron (NR_036627, intron 6 of 23)	intron (NR_036627, intron 6 of 23)	-3062	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
149120	chr21	17610651	17612100	+	0	NA	promoter-TSS (NR_149073)	promoter-TSS (NR_149073)	-311	NR_149073	110806272		NR_149073	ENSG00000280594	BTG3-AS1	ASBEL	BTG3 antisense RNA 1	ncRNA
22847	chr1	225460391	225461930	+	0	NA	Intergenic	Intergenic	-32305	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
187913	chr5	148845721	148846230	+	0	NA	Intergenic	Intergenic	19364	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
217841	chr8	37733951	37734050	+	0	NA	TTS (NR_125820)	TTS (NR_125820)	-2634	NM_001362880	11160		NM_007175	ENSG00000147475	ERLIN2	C8orf2|Erlin-2|NET32|SPFH2|SPG18|SPG18A|SPG18B	ER lipid raft associated 2	protein-coding
202558	chr6	158661251	158661350	+	0	NA	5' UTR (NM_001242384, exon 3 of 19)	5' UTR (NM_001242384, exon 3 of 19)	-2103	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
65161	chr14	49579201	49579400	+	0	NA	intron (NM_001030001, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	7080	NM_001032	6235		NM_001032	ENSG00000213741	RPS29	DBA13|S29|uS14	ribosomal protein S29	protein-coding
61169	chr13	49108621	49109080	+	0	NA	intron (NM_001079673, intron 3 of 25)	intron (NM_001079673, intron 3 of 25)	-1467	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
192439	chr6	24895021	24895280	+	0	NA	intron (NM_001286446, intron 1 of 13)	AluSg|SINE|Alu	15584	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
128268	chr2	54581001	54581200	+	0	NA	intron (NM_178313, intron 1 of 30)	AluSz|SINE|Alu	22706	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
85052	chr16	31956221	31956580	+	0	NA	Intergenic	Intergenic	82593	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
174691	chr4	42151921	42152980	+	0	NA	intron (NM_207406, intron 1 of 5)	CpG-21163	205	NM_001159547	389206		NM_207406	ENSG00000188848	BEND4	CCDC4	BEN domain containing 4	protein-coding
187282	chr5	141560751	141561430	+	0	NA	intron (NR_038333, intron 1 of 2)	intron (NR_038333, intron 1 of 2)	2779	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
180050	chr5	1076251	1076550	+	0	NA	intron (NM_006598, intron 13 of 23).2	intron (NM_006598, intron 13 of 23).2	-13426	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
235754	chrX	48956871	48959580	+	0	NA	promoter-TSS (NM_017602)	promoter-TSS (NM_017602)	156	NM_001136159	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
209532	chr7	77128721	77128980	+	0	NA	intron (NM_020879, intron 1 of 18)	L1ME1|LINE|L1	6235	NM_020879	57639		NM_020879	ENSG00000135205	CCDC146	MBO2	coiled-coil domain containing 146	protein-coding
161168	chr3	39104021	39104680	+	0	NA	intron (NR_103866, intron 1 of 8)	intron (NR_103866, intron 1 of 8)	3277	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
124795	chr2	7453451	7453750	+	0	NA	Intergenic	Intergenic	32339	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
235903	chrX	53048751	53049250	+	0	NA	5' UTR (NM_018969, exon 1 of 2)	5' UTR (NM_018969, exon 1 of 2)	211	NM_018969	54328		NM_018969	ENSG00000184194	GPR173	SREB3	G protein-coupled receptor 173	protein-coding
70904	chr14	104076471	104077050	+	0	NA	Intergenic	Intergenic	-8940	NM_001080464	374569		NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT|LYSOLP|hASNase1	asparaginase	protein-coding
38427	chr11	45100471	45100850	+	0	NA	intron (NM_001359633, intron 2 of 7)	intron (NM_001359633, intron 2 of 7)	6501	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
25324	chr10	6227451	6227550	+	0	NA	intron (NM_001363545, intron 14 of 14)	MIRb|SINE|MIR	24568	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
54152	chr12	76557371	76558050	+	0	NA	intron (NM_001319652, intron 1 of 25)	intron (NM_001319652, intron 1 of 25)	2061	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
64421	chr14	24183121	24183750	+	0	NA	intron (NM_024658, intron 21 of 29).2	intron (NM_024658, intron 21 of 29).2	5381	NM_024658	79711		NM_024658	ENSG00000196497	IPO4	Imp4	importin 4	protein-coding
238988	chrX	155873201	155873400	+	0	NA	Intergenic	Intergenic	-8045	NM_001145149	6845		NM_005638	ENSG00000124333	VAMP7	SYBL1|TI-VAMP|TIVAMP|VAMP-7	vesicle associated membrane protein 7	protein-coding
72619	chr15	38072371	38073030	+	0	NA	non-coding (NR_147201, exon 1 of 3)	non-coding (NR_147201, exon 1 of 3)	290	NR_147201	107984773		NR_147199	ENSG00000236914	LINC01852	-	long intergenic non-protein coding RNA 1852	ncRNA
23888	chr1	234926841	234928350	+	0	NA	Intergenic	Intergenic	36404	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
221396	chr8	123476901	123477100	+	0	NA	Intergenic	Intergenic	55143	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
40466	chr11	64228001	64228400	+	0	NA	intron (NM_032344, intron 3 of 5)	AluSz6|SINE|Alu	1926	NM_001128613	84304		NM_032344	ENSG00000149761	NUDT22	-	nudix hydrolase 22	protein-coding
68013	chr14	75124021	75125230	+	0	NA	intron (NM_001329238, intron 1 of 21)	intron (NM_001329238, intron 1 of 21)	2423	NM_001329238	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
181832	chr5	52911971	52912130	+	0	NA	intron (NM_181501, intron 14 of 28)	intron (NM_181501, intron 14 of 28)	-77302	NR_073107	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
78217	chr15	90642921	90643430	+	0	NA	3' UTR (NM_022769, exon 15 of 15)	3' UTR (NM_022769, exon 15 of 15)	-17059	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
235653	chrX	48528221	48529530	+	0	NA	TTS (NM_006579)	TTS (NM_006579)	7067	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
34696	chr10	133400851	133401550	+	0	NA	intron (NM_138384, intron 6 of 10)	intron (NM_138384, intron 6 of 10)	7043	NM_138384	92170		NM_138384	ENSG00000148824	MTG1	GTP|GTPBP7	mitochondrial ribosome associated GTPase 1	protein-coding
23181	chr1	226882251	226883350	+	0	NA	intron (NM_012486, intron 4 of 12)	L3b|LINE|CR1	12184	NM_000447	5664		NM_000447	ENSG00000143801	PSEN2	AD3L|AD4|CMD1V|PS2|STM2	presenilin 2	protein-coding
231918	chr9	133104551	133104850	+	0	NA	intron (NM_001271775, intron 9 of 17)	AluSz|SINE|Alu	16540	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
100120	chr17	58343821	58345750	+	0	NA	TTS (NM_003168)	TTS (NM_003168)	7416	NM_003168	6827		NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H|Supt4a	SPT4 homolog, DSIF elongation factor subunit	protein-coding
226539	chr9	72333871	72334030	+	0	NA	intron (NR_110952, intron 3 of 4)	intron (NR_110952, intron 3 of 4)	28514	NR_110953	100507540		NR_110952	ENSG00000225434	LINC01504	-	long intergenic non-protein coding RNA 1504	ncRNA
131070	chr2	88671621	88672080	+	0	NA	Intergenic	Intergenic	-19823	NM_144563	22934		NM_144563	ENSG00000153574	RPIA	RPI|RPIAD	ribose 5-phosphate isomerase A	protein-coding
200626	chr6	136791151	136791600	+	0	NA	intron (NM_005923, intron 1 of 29)	intron (NM_005923, intron 1 of 29)	1102	NM_005923	4217		NM_005923	ENSG00000197442	MAP3K5	ASK1|MAPKKK5|MEKK5	mitogen-activated protein kinase kinase kinase 5	protein-coding
189823	chr5	177024651	177025300	+	0	NA	intron (NM_001308213, intron 2 of 8)	L1ME1|LINE|L1	2279	NM_001308214	23567		NM_012279	ENSG00000113761	ZNF346	JAZ|Zfp346	zinc finger protein 346	protein-coding
201523	chr6	149112701	149113100	+	0	NA	Intergenic	Intergenic	-80239	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
195496	chr6	37171921	37172800	+	0	NA	intron (NM_001243186, intron 4 of 5)	intron (NM_001243186, intron 4 of 5)	2208	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
138524	chr2	207423721	207424380	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-105912	NM_001320793	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123324	chr19	53583321	53584380	+	0	NA	Intergenic	Intergenic	19647	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
3770	chr1	16690351	16690850	+	0	NA	TTS (NR_026567)	TTS (NR_026567)	9345	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
179566	chr4	185210201	185211330	+	0	NA	intron (NM_001378032, intron 1 of 19)	intron (NM_001378032, intron 1 of 19)	1208	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
171290	chr3	195909001	195910950	+	0	NA	non-coding (NR_145450, exon 2 of 2)	non-coding (NR_145450, exon 2 of 2)	-1424	NM_001382273	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
41249	chr11	65793401	65793800	+	0	NA	intron (NM_004561, intron 1 of 3)	intron (NM_004561, intron 1 of 3)	-2732	NR_108085	101927828		NR_108085	ENSG00000255120	OVOL1-AS1	-	OVOL1 antisense RNA 1	ncRNA
45241	chr11	117977621	117978430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-8369	NR_026691	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
16044	chr1	152440821	152441450	+	0	NA	Intergenic	Intergenic	-26872	NM_016190	49860		NM_016190	ENSG00000143536	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
52816	chr12	56987251	56987850	+	0	NA	Intergenic	Intergenic	-6942	NM_007264	11318		NM_007264	ENSG00000166856	GPR182	7TMR|ADMR|AM-R|AMR|G10D|L1-R|gamrh|hrhAMR	G protein-coupled receptor 182	protein-coding
63239	chr13	113932971	113933330	+	0	NA	Intergenic	AluSz|SINE|Alu	-4159	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
156820	chr22	41935771	41935930	+	0	NA	Intergenic	Intergenic	4369	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
161196	chr3	39143721	39145380	+	0	NA	intron (NM_001320559, intron 3 of 4)	intron (NM_001320559, intron 3 of 4)	2880	NM_001320559	64651		NM_033027	ENSG00000144655	CSRNP1	AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1	cysteine and serine rich nuclear protein 1	protein-coding
99630	chr17	50569551	50569850	+	0	NA	intron (NM_198376, intron 3 of 34)	intron (NM_198376, intron 3 of 34)	-7592	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
9069	chr1	44833171	44833550	+	0	NA	intron (NM_001166292, intron 2 of 22)	intron (NM_001166292, intron 2 of 22)	9584	NM_001166292	8643		NM_003738	ENSG00000117425	PTCH2	PTC2	patched 2	protein-coding
215328	chr7	157357201	157357730	+	0	NA	intron (NM_001363676, intron 1 of 6)	AluSz|SINE|Alu	20461	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
129787	chr2	71276221	71277070	+	0	NA	Intergenic	CpG	-49542	NM_020459	400961		NM_020459	ENSG00000124374	PAIP2B	-	poly(A) binding protein interacting protein 2B	protein-coding
37128	chr11	13337721	13338330	+	0	NA	intron (NM_001351821, intron 3 of 19)	intron (NM_001351821, intron 3 of 19)	60235	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
13733	chr1	116810321	116811280	+	0	NA	Intergenic	Intergenic	56370	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
144157	chr20	34057601	34058030	+	0	NA	intron (NM_016732, intron 2 of 9)	intron (NM_016732, intron 2 of 9)	8696	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
51381	chr12	51869001	51870300	+	0	NA	Intergenic	CpG	-18453	NM_182608	341405		NM_182608	ENSG00000167612	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding
55389	chr12	104454571	104455000	+	0	NA	Intergenic	Intergenic	-2163	NM_018413	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
221368	chr8	123379601	123379800	+	0	NA	intron (NM_014109, intron 2 of 27)	AluSx3|SINE|Alu	16747	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
30885	chr10	86959671	86959830	+	0	NA	intron (NM_003087, intron 2 of 4)	intron (NM_003087, intron 2 of 4)	1151	NM_003087	6623		NM_003087	ENSG00000173267	SNCG	BCSG1|SR	synuclein gamma	protein-coding
49684	chr12	30756321	30756900	+	0	NA	intron (NR_135046, intron 1 of 1)	intron (NR_135046, intron 1 of 1)	1536	NR_135046	645485		NR_135046	ENSG00000246331	LOC645485	-	uncharacterized LOC645485	ncRNA
216553	chr8	21900251	21900550	+	0	NA	Intergenic	Intergenic	13290	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
16552	chr1	154964801	154965700	+	0	NA	intron (NM_001130041, intron 12 of 12)	AluSx1|SINE|Alu	-3468	NM_138300	90780		NM_138300	ENSG00000163348	PYGO2	1190004M21Rik	pygopus family PHD finger 2	protein-coding
219750	chr8	81078821	81079280	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	33018	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
63988	chr14	22305671	22305900	+	0	NA	Intergenic	Intergenic	126968	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
127591	chr2	42809801	42811750	+	0	NA	Intergenic	CpG	-18192	NM_012205	23498		NM_012205	ENSG00000162882	HAAO	3-HAO|HAO|VCRL1|h3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
29527	chr10	70840901	70841300	+	0	NA	intron (NM_003901, intron 2 of 14)	intron (NM_003901, intron 2 of 14)	25152	NM_003901	8879		NM_003901	ENSG00000166224	SGPL1	NPHS14|RENI|S1PL|SPL	sphingosine-1-phosphate lyase 1	protein-coding
179598	chr4	185428021	185429080	+	0	NA	promoter-TSS (NM_001114357)	promoter-TSS (NM_001114357)	-784	NM_001114357	441054		NM_001114357	ENSG00000205129	CFAP96	C4orf47	cilia and flagella associated protein 96	protein-coding
146821	chr20	51389821	51390580	+	0	NA	3' UTR (NM_001258296, exon 11 of 11)	3' UTR (NM_001258296, exon 11 of 11)	62777	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
37821	chr11	33064621	33064880	+	0	NA	intron (NM_001145541, intron 7 of 9)	L2c|LINE|L2	-11400	NR_015451	283267		NR_015451	ENSG00000280798	LINC00294	NCRNA00294	long intergenic non-protein coding RNA 294	ncRNA
236782	chrX	79095101	79095580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-49348	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
195468	chr6	37047371	37048000	+	0	NA	Intergenic	Intergenic	42030	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
88072	chr16	81473951	81474450	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	-21154	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
62947	chr13	111429071	111429230	+	0	NA	Intergenic	L1MC4|LINE|L1	108508	NM_152324	121793		NM_152324	ENSG00000153495	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
170970	chr3	194495901	194496600	+	0	NA	Intergenic	Intergenic	9110	NR_033929	401106		NR_033929		ATP13A3-DT	LINC00884	ATP13A3 divergent transcript	ncRNA
106612	chr18	22332651	22332830	+	0	NA	Intergenic	Intergenic	85175	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
233672	chrX	1147601	1147800	+	0	NA	Intergenic	Intergenic	64949	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
135302	chr2	160272301	160272500	+	0	NA	promoter-TSS (NR_103775)	promoter-TSS (NR_103775)	-505	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
741	chr1	1484671	1484830	+	0	NA	intron (NM_031921, intron 7 of 15)	intron (NM_031921, intron 7 of 15)	6901	NM_001317238	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
82160	chr16	14906951	14907250	+	0	NA	promoter-TSS (NR_049832)	promoter-TSS (NR_049832)	-617	NR_128712	103504726		NR_128712	ENSG00000265776	MIR3670-3	hsa-mir-3670-3	microRNA 3670-3	ncRNA
127417	chr2	42117971	42118530	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-51103	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
238549	chrX	153778751	153779050	+	0	NA	intron (NM_001163257, intron 36 of 36)	intron (NM_001163257, intron 36 of 36)	-2101	NM_001170761	26576		NM_014370	ENSG00000184343	SRPK3	MSSK-1|MSSK1|STK23	SRSF protein kinase 3	protein-coding
5764	chr1	26490371	26490730	+	0	NA	Intergenic	Intergenic	18110	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
223349	chr8	143845571	143845930	+	0	NA	Intergenic	L1MEj|LINE|L1	-4777	NM_178564	340371		NM_178564	ENSG00000185189	NRBP2	TRG16|pp9320	nuclear receptor binding protein 2	protein-coding
82408	chr16	16225901	16226100	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-2506	NM_001171	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
108547	chr18	74540871	74541250	+	0	NA	intron (NM_032649, intron 1 of 11)	intron (NM_032649, intron 1 of 11)	6560	NM_032649	84735		NM_032649	ENSG00000150656	CNDP1	CN1|CPGL2|HsT2308	carnosine dipeptidase 1	protein-coding
190435	chr5	179839071	179839630	+	0	NA	intron (NM_016175, intron 6 of 6)	intron (NM_016175, intron 6 of 6)	18445	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
128296	chr2	54612421	54612680	+	0	NA	intron (NM_178313, intron 3 of 30)	intron (NM_178313, intron 3 of 30)	54156	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
25968	chr10	11685951	11686480	+	0	NA	Intergenic	L1MA10|LINE|L1	-56167	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
11640	chr1	91764551	91764850	+	0	NA	intron (NR_036634, intron 4 of 17)	intron (NR_036634, intron 4 of 17)	121451	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
26875	chr10	25174501	25174900	+	0	NA	promoter-TSS (NM_020752)	promoter-TSS (NM_020752)	-301	NM_020752	57512		NM_020752	ENSG00000151025	GPR158	mGlyR	G protein-coupled receptor 158	protein-coding
56126	chr12	110886621	110886950	+	0	NA	intron (NM_152591, intron 8 of 11)	LTR33|LTR|ERVL	33794	NM_000432	4633		NM_000432	ENSG00000111245	MYL2	CMH10|MFM12|MLC-2|MLC-2s/v|MLC-2v|MLC2	myosin light chain 2	protein-coding
129619	chr2	70119921	70120580	+	0	NA	Intergenic	AluSx|SINE|Alu	5066	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
82195	chr16	14972221	14973080	+	0	NA	Intergenic	AluSx|SINE|Alu	-2085	NM_001285447	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
77940	chr15	89332371	89333050	+	0	NA	intron (NM_002693, intron 2 of 22)	MER20|DNA|hAT-Charlie	2114	NM_001126131	5428		NM_002693	ENSG00000140521	POLG	MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE	DNA polymerase gamma, catalytic subunit	protein-coding
89347	chr16	88760971	88761130	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	18283	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
37783	chr11	32426971	32428530	+	0	NA	intron (NR_160306, intron 3 of 9)	intron (NR_160306, intron 3 of 9)	3063	NM_001198552	7490		NM_000378	ENSG00000184937	WT1	AWT1|GUD|NPHS4|WAGR|WIT-2|WT-1|WT33	WT1 transcription factor	protein-coding
89149	chr16	88523121	88523650	+	0	NA	intron (NR_148997, intron 2 of 3)	intron (NR_148997, intron 2 of 3)	7668	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
167925	chr3	136177421	136177900	+	0	NA	intron (NM_018133, intron 1 of 1)	AluY|SINE|Alu	16808	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
218075	chr8	38927721	38928380	+	0	NA	intron (NM_021623, intron 2 of 11)	intron (NM_021623, intron 2 of 11)	26704	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
84087	chr16	29610811	29611500	+	0	NA	intron (NR_135317, intron 1 of 11)	AluSx|SINE|Alu	2562	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
172695	chr4	2762751	2763230	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-6654	NM_024309	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
152282	chr22	20300971	20301130	+	0	NA	Intergenic	Intergenic	19010	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
40280	chr11	63842751	63843050	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	3790	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
183681	chr5	80668371	80668730	+	0	NA	intron (NM_002439, intron 3 of 23)	MER52A|LTR|ERV1	-13567	NR_110936	1719		NM_000791	ENSG00000228716	DHFR	DHFR1|DHFRP1|DYR	dihydrofolate reductase	protein-coding
37056	chr11	12235001	12235200	+	0	NA	intron (NR_144415, intron 14 of 26)	intron (NR_144415, intron 14 of 26)	-51800	NM_032867	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
25094	chr10	3887751	3888680	+	0	NA	Intergenic	Intergenic	54265	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
48978	chr12	13044051	13045080	+	0	NA	intron (NM_020853, intron 1 of 12)	CpG	184	NM_020853	57613		NM_020853	ENSG00000084444	FAM234B	KIAA1467	family with sequence similarity 234 member B	protein-coding
143835	chr20	32512121	32512580	+	0	NA	intron (NM_001256798, intron 3 of 10)	intron (NM_001256798, intron 3 of 10)	2391	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
152913	chr22	22763851	22764350	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-58676	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
90452	chr17	1373401	1373800	+	0	NA	intron (NR_024058, intron 1 of 6)	AluY|SINE|Alu	26622	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
112993	chr19	7888001	7888680	+	0	NA	promoter-TSS (NM_025061)	promoter-TSS (NM_025061)	-165	NM_001268284	80131		NM_025061	ENSG00000171017	LRRC8E	-	leucine rich repeat containing 8 VRAC subunit E	protein-coding
155724	chr22	39132171	39132530	+	0	NA	3' UTR (NM_175709, exon 6 of 6)	3' UTR (NM_175709, exon 6 of 6)	20330	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
90234	chr17	711671	711830	+	0	NA	intron (NM_018289, intron 1 of 17)	MamRep137|DNA|TcMar-Tigger	3089	NM_018289	55275		NM_018289	ENSG00000141252	VPS53	HCCS1|PCH2E|hVps53L|pp13624	VPS53 subunit of GARP complex	protein-coding
33742	chr10	122415251	122415550	+	0	NA	intron (NR_165161, intron 7 of 13)	L1MD2|LINE|L1	-1565	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
229066	chr9	114348771	114349930	+	0	NA	intron (NM_001317952, intron 14 of 20)	L2c|LINE|L2	19481	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
64509	chr14	24367671	24367950	+	0	NA	promoter-TSS (NM_001198965)	promoter-TSS (NM_001198965)	-374	NM_001198965	4776		NM_004554	ENSG00000100968	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T cells 4	protein-coding
39488	chr11	61015001	61015200	+	0	NA	intron (NM_001254751, intron 8 of 10)	MIR|SINE|MIR	43420	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
231692	chr9	131713171	131713530	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-3508	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
124822	chr2	7693521	7693780	+	0	NA	Intergenic	Intergenic	206005	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
228407	chr9	99184221	99185100	+	0	NA	Intergenic	Intergenic	37282	NM_033087	85365		NM_033087	ENSG00000119523	ALG2	CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2	ALG2 alpha-1,3/1,6-mannosyltransferase	protein-coding
239151	chrY	11329521	11330300	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1091680	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
176039	chr4	82370701	82370950	+	0	NA	intron (NM_001003810, intron 1 of 6)	intron (NM_001003810, intron 1 of 6)	3166	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
80987	chr16	3983051	3983500	+	0	NA	exon (NM_001116, exon 7 of 11)	exon (NM_001116, exon 7 of 11)	-32831	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
197872	chr6	89090501	89091330	+	0	NA	Intergenic	Intergenic	10164	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
59283	chr13	24249401	24250000	+	0	NA	exon (NM_001286792, exon 5 of 15)	exon (NM_001286792, exon 5 of 15)	4739	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
155623	chr22	38868571	38869400	+	0	NA	intron (NM_014292, intron 4 of 4)	intron (NM_014292, intron 4 of 4)	3231	NM_001303494	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
188302	chr5	151158501	151159180	+	0	NA	Intergenic	L1MB5|LINE|L1	-1061	NM_001363114	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
48741	chr12	10719071	10719230	+	0	NA	intron (NM_003651, intron 1 of 9)	intron (NM_003651, intron 1 of 9)	4173	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
3642	chr1	16390871	16391030	+	0	NA	intron (NR_073501, intron 2 of 4)	L2c|LINE|L2	23708	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
169815	chr3	177107571	177107730	+	0	NA	intron (NM_001374330, intron 1 of 14)	intron (NM_001374330, intron 1 of 14)	88828	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
106966	chr18	31819601	31819830	+	0	NA	Intergenic	MER34C2|LTR|ERV1	-58835	NM_001034172	147407		NM_001034172	ENSG00000141437	SLC25A52	MCART2	solute carrier family 25 member 52	protein-coding
122460	chr19	49512921	49514150	+	0	NA	intron (NM_001136019, intron 2 of 6)	CpG	269	NM_004107	2217		NM_004107	ENSG00000104870	FCGRT	FCRN|FcgammaRn|alpha-chain	Fc gamma receptor and transporter	protein-coding
173543	chr4	10080751	10081050	+	0	NA	intron (NM_017491, intron 11 of 14)	intron (NM_017491, intron 11 of 14)	-2208	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
7621	chr1	35540851	35540950	+	0	NA	intron (NM_024874, intron 2 of 20)	L2a|LINE|L2	16503	NM_024874	79932		NM_024874	ENSG00000142687	KIAA0319L	AAVR|AAVRL	KIAA0319 like	protein-coding
47522	chr12	4151951	4152500	+	0	NA	Intergenic	Intergenic	-121537	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
20456	chr1	198556551	198557380	+	0	NA	Intergenic	Intergenic	-16020	NM_133326	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
212143	chr7	116582851	116583230	+	0	NA	intron (NR_165033, intron 2 of 4)	intron (NR_165033, intron 2 of 4)	31617	NR_120506	100996266		NR_120506		COMETT	COMET|LINC01510	cytosolic oncogenic antisense to MET transcript	ncRNA
142002	chr20	1466221	1468030	+	0	NA	non-coding (NR_038164, exon 1 of 8)	non-coding (NR_038164, exon 1 of 8)	567	NM_018839	55968		NM_016143	ENSG00000088833	NSFL1C	P47|UBX1|UBXD10|UBXN2C|dJ776F14.1	NSFL1 cofactor	protein-coding
108792	chr18	77421351	77421530	+	0	NA	Intergenic	L1PA3|LINE|L1	171592	NM_001480	2587		NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding
146327	chr20	49227621	49228180	+	0	NA	intron (NM_017895, intron 7 of 20)	AluSg4|SINE|Alu	8484	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
122791	chr19	50332071	50332550	+	0	NA	intron (NR_110912, intron 1 of 3)	intron (NR_110912, intron 1 of 3)	1226	NR_110912	3748		NM_004977	ENSG00000131398	KCNC3	KSHIIID|KV3.3|SCA13	potassium voltage-gated channel subfamily C member 3	protein-coding
75717	chr15	68114371	68115030	+	0	NA	intron (NM_001320687, intron 3 of 14)	intron (NM_001320687, intron 3 of 14)	60124	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
55187	chr12	101146451	101146590	+	0	NA	Intergenic	L1HS|LINE|L1	7962	NR_049838	100847078		NR_049838	ENSG00000265470	MIR548AQ	-	microRNA 548aq	ncRNA
59076	chr13	20905421	20905680	+	0	NA	Intergenic	AluSp|SINE|Alu	-2776	NM_022459	64328		NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
33308	chr10	114826321	114826580	+	0	NA	intron (NM_001135051, intron 1 of 16)	MIRb|SINE|MIR	4670	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
56058	chr12	110561751	110563280	+	0	NA	intron (NM_139283, intron 1 of 5)	AluSz|SINE|Alu	20803	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
151446	chr21	46152401	46152600	+	0	NA	exon (NM_001350598, exon 2 of 2)	exon (NM_001350598, exon 2 of 2)	1125	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
146243	chr20	48829321	48829580	+	0	NA	Intergenic	Intergenic	-1451	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
165300	chr3	81769071	81769400	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-7590	NM_000158	2632		NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	1,4-alpha-glucan branching enzyme 1	protein-coding
163176	chr3	50189201	50190030	+	0	NA	TTS (NM_001318800)	TTS (NM_001318800)	-1995	NM_144499	2779		NM_000172	ENSG00000114349	GNAT1	CSNB1G|CSNBAD3|GBT1|GNATR|HG1F	G protein subunit alpha transducin 1	protein-coding
15019	chr1	148302651	148303780	+	0	NA	Intergenic	CpG	31339	NR_049810	100847044		NR_049810	ENSG00000283676	MIR5087	-	microRNA 5087	ncRNA
11011	chr1	84699771	84699930	+	0	NA	Intergenic	Intergenic	-9382	NM_001166295	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
186771	chr5	139338271	139338700	+	0	NA	Intergenic	AluSg|SINE|Alu	-3347	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
53602	chr12	68041501	68041730	+	0	NA	Intergenic	L2a|LINE|L2	52170	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
125956	chr2	25215571	25217000	+	0	NA	Intergenic	(GGCGCCC)n|Simple_repeat|Simple_repeat	11972	NR_132378	106144568		NR_132378	ENSG00000230452	LINC01381	DADOT	long intergenic non-protein coding RNA 1381	ncRNA
173270	chr4	7050171	7050730	+	0	NA	intron (NM_152293, intron 1 of 1)	intron (NM_152293, intron 1 of 1)	-4219	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
36795	chr11	9516271	9516430	+	0	NA	exon (NM_003442, exon 14 of 16)	exon (NM_003442, exon 14 of 16)	55338	NM_003442	7702		NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
156571	chr22	41468371	41470030	+	0	NA	promoter-TSS (NM_001098)	promoter-TSS (NM_001098)	83	NM_001098	50		NM_001098	ENSG00000100412	ACO2	ACONM|HEL-S-284|ICRD|OCA8|OPA9	aconitase 2	protein-coding
209655	chr7	77913951	77914250	+	0	NA	intron (NM_001366086, intron 7 of 17)	intron (NM_001366086, intron 7 of 17)	73970	NM_001127359	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
133090	chr2	112580751	112581350	+	0	NA	Intergenic	L1MD2|LINE|L1	-3397	NR_163920	84269		NM_032309	ENSG00000125611	CHCHD5	C2orf9|CHTM1|MIC14|MIX14	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding
120518	chr19	44847371	44847730	+	0	NA	intron (NM_002856, intron 1 of 5)	intron (NM_002856, intron 1 of 5)	1253	NM_002856	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
106998	chr18	32042551	32043050	+	0	NA	intron (NM_017831, intron 3 of 5)	intron (NM_017831, intron 3 of 5)	23975	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
212392	chr7	128102071	128102230	+	0	NA	Intergenic	Intergenic	20289	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
6543	chr1	28591721	28593230	+	0	NA	5' UTR (NM_001193532, exon 1 of 2)	5' UTR (NM_001193532, exon 1 of 2)	210	NM_001385188	115273		NM_152304	ENSG00000188060	RAB42	-	RAB42, member RAS oncogene family	protein-coding
10689	chr1	74504171	74504350	+	0	NA	intron (NM_015978, intron 23 of 24)	intron (NM_015978, intron 23 of 24)	8351	NM_001382280	105378803		NM_001364666	ENSG00000162621	LRRC53	-	leucine rich repeat containing 53	protein-coding
20305	chr1	197335771	197335930	+	0	NA	intron (NM_001193640, intron 2 of 9)	intron (NM_001193640, intron 2 of 9)	67598	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
75925	chr15	70102471	70102630	+	0	NA	Intergenic	Intergenic	-4633	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
1496	chr1	2764101	2764300	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	36668	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
223376	chr8	143883571	143883730	+	0	NA	Intergenic	Intergenic	-5183	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238576	chrX	153831871	153832430	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-1606	NM_032512	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
61678	chr13	74005721	74006180	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	127979	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
236850	chrX	79271451	79271550	+	0	NA	Intergenic	Intergenic	95834	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
189241	chr5	171977851	171978450	+	0	NA	intron (NM_012300, intron 1 of 12)	L2c|LINE|L2	28488	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
125606	chr2	18178851	18178950	+	0	NA	Intergenic	Intergenic	300233	NM_002252	3790		NM_002252	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel modifier subfamily S member 3	protein-coding
149773	chr21	34812601	34812800	+	0	NA	intron (NM_001754, intron 7 of 8)	intron (NM_001754, intron 7 of 8)	66875	NR_038886	100506385		NR_038885	ENSG00000234380	LINC01426	lincRNA-uc002yug.2	long intergenic non-protein coding RNA 1426	ncRNA
36760	chr11	9386251	9386550	+	0	NA	intron (NM_006391, intron 1 of 24)	intron (NM_006391, intron 1 of 24)	1748	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
225100	chr9	33436901	33437100	+	0	NA	Intergenic	Intergenic	10593	NM_004925	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
137455	chr2	196990251	196990350	+	0	NA	TTS (NM_001367496)	TTS (NM_001367496)	-63593	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
148856	chr21	8420971	8421150	+	0	NA	Intergenic	Intergenic	-11470	NR_128715	103504727		NR_128715	ENSG00000274060	MIR6724-2	hsa-mir-6724-2	microRNA 6724-2	ncRNA
87711	chr16	74997001	74997550	+	0	NA	Intergenic	AluSz|SINE|Alu	-1749	NM_032268	84937		NM_032268	ENSG00000186187	ZNRF1	NIN283	zinc and ring finger 1	protein-coding
146570	chr20	50076551	50077530	+	0	NA	Intergenic	AluSp|SINE|Alu	-35411	NR_051976	100887755		NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
100674	chr17	63765121	63765380	+	0	NA	intron (NM_020198, intron 2 of 12)	L1MA9|LINE|L1	8347	NM_020198	57003		NM_020198	ENSG00000108588	CCDC47	GK001|MSTP041|THNS	coiled-coil domain containing 47	protein-coding
219882	chr8	85513551	85513880	+	0	NA	Intergenic	Intergenic	-48800	NR_121630	100996348		NR_121630		CA3-AS1	-	CA3 antisense RNA 1	ncRNA
209905	chr7	92131651	92132150	+	0	NA	intron (NM_001146152, intron 1 of 9)	intron (NM_001146152, intron 1 of 9)	2577	NM_000786	1595		NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
98316	chr17	46253451	46254530	+	0	NA	Intergenic	L1M7|LINE|L1	-28623	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
73444	chr15	43253301	43254030	+	0	NA	intron (NM_201631, intron 4 of 12)	intron (NM_201631, intron 4 of 12)	13263	NM_004245	9333		NM_004245	ENSG00000104055	TGM5	PSS2|TG(X)|TGASE5|TGASEX|TGM6|TGMX|TGX	transglutaminase 5	protein-coding
91045	chr17	2904101	2904500	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	61595	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
9795	chr1	53586701	53586900	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	127401	NM_033067	63948		NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding
141748	chr2	241895471	241895900	+	0	NA	intron (NM_001382370, intron 2 of 2)	intron (NM_001382370, intron 2 of 2)	3455	NM_001382370	285095		NM_001382368	ENSG00000216921	FAM240C	-	family with sequence similarity 240 member C	protein-coding
170699	chr3	187902051	187902350	+	0	NA	Intergenic	Intergenic	74207	NR_135538	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
92920	chr17	16583821	16584750	+	0	NA	Intergenic	L1M4|LINE|L1	-15073	NM_001346169	57336		NM_020653	ENSG00000141040	ZNF287	ZKSCAN13|ZSCAN45	zinc finger protein 287	protein-coding
5920	chr1	26850421	26850680	+	0	NA	intron (NM_032283, intron 4 of 7)	intron (NM_032283, intron 4 of 7)	-12599	NM_006142	2810		NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding
28588	chr10	52233571	52233730	+	0	NA	intron (NM_001098512, intron 9 of 17)	L1PA2|LINE|L1	80478	NR_038277	100506939		NR_038277		PRKG1-AS1	-	PRKG1 antisense RNA 1	ncRNA
195004	chr6	35405151	35405450	+	0	NA	intron (NM_001171818, intron 3 of 8)	AluSx|SINE|Alu	-47038	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
126005	chr2	25312651	25313650	+	0	NA	intron (NR_135490, intron 2 of 23)	intron (NR_135490, intron 2 of 23)	15571	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
61367	chr13	51403901	51404300	+	0	NA	intron (NM_001039937, intron 5 of 18)	(AC)n|Simple_repeat|Simple_repeat	48936	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
161072	chr3	38084301	38086330	+	0	NA	exon (NM_007335, exon 8 of 37)	exon (NM_007335, exon 8 of 37)	46107	NM_007335	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
195331	chr6	36616851	36617500	+	0	NA	Intergenic	Intergenic	5337	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
43216	chr11	75434601	75435200	+	0	NA	3' UTR (NM_001351168, exon 18 of 18)	3' UTR (NM_001351168, exon 18 of 18)	-4271	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
180444	chr5	10579051	10579550	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	15230	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
19035	chr1	169688221	169688800	+	0	NA	Intergenic	LTR7|LTR|ERV1	20347	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
194890	chr6	34677751	34678250	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-18154	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
45958	chr11	121422501	121423030	+	0	NA	Intergenic	L1MB2|LINE|L1	-29549	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
176333	chr4	88211801	88212330	+	0	NA	intron (NM_001348985, intron 1 of 16)	intron (NM_001348985, intron 1 of 16)	19561	NM_001348985	9429		NM_004827	ENSG00000118777	ABCG2	ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|CDw388|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1	ATP binding cassette subfamily G member 2 (JR blood group)	protein-coding
229098	chr9	114380001	114380200	+	0	NA	intron (NM_001317952, intron 1 of 20)	AluJb|SINE|Alu	7882	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
1006	chr1	1851901	1852100	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSp|SINE|Alu	39087	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
206148	chr7	27836471	27836830	+	0	NA	intron (NM_175061, intron 4 of 4)	intron (NM_175061, intron 4 of 4)	96555	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
100773	chr17	63995471	63996150	+	0	NA	TTS (NR_126169)	TTS (NR_126169)	-2541	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
217223	chr8	26513671	26514150	+	0	NA	promoter-TSS (NM_001197293)	promoter-TSS (NM_001197293)	-38	NM_007257	10687		NM_007257	ENSG00000240694	PNMA2	MA2|MM2|RGAG2	PNMA family member 2	protein-coding
185524	chr5	131334771	131334930	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA4|LINE|L1	70797	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
221431	chr8	123823321	123823730	+	0	NA	Intergenic	Intergenic	-28462	NM_001039112	654463		NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1 like family member 6	protein-coding
116477	chr19	18105501	18105700	+	0	NA	intron (NM_015016, intron 1 of 26)	AluSq2|SINE|Alu	-6784	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
217347	chr8	27770451	27771450	+	0	NA	intron (NR_156432, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	1690	NM_001304532	55246		NM_018246	ENSG00000147419	CCDC25	-	coiled-coil domain containing 25	protein-coding
149674	chr21	33641171	33644200	+	0	NA	promoter-TSS (NM_145858)	promoter-TSS (NM_145858)	184	NM_001331009	6453		NM_003024	ENSG00000205726	ITSN1	ITSN|SH3D1A|SH3P17	intersectin 1	protein-coding
237271	chrX	110992671	110992850	+	0	NA	intron (NM_001128167, intron 1 of 14)	L3|LINE|CR1	48363	NM_001324330	5063		NM_002578	ENSG00000077264	PAK3	ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|XLID30|bPAK|beta-PAK	p21 (RAC1) activated kinase 3	protein-coding
143769	chr20	32406851	32407930	+	0	NA	intron (NM_015338, intron 3 of 11)	L1MC4|LINE|L1	48325	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
113419	chr19	9702771	9703030	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	-2124	NR_146444	729648		NM_001199814		ZNF812P	ZNF812	zinc finger protein 812, pseudogene	pseudo
153499	chr22	26485721	26486380	+	0	NA	exon (NM_001013694, exon 2 of 7)	exon (NM_001013694, exon 2 of 7)	2173	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
86519	chr16	67152801	67153380	+	0	NA	Intergenic	Intergenic	-2092	NM_033309	84752		NM_033309	ENSG00000237172	B3GNT9	-	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding
207758	chr7	50069171	50070100	+	0	NA	intron (NM_007009, intron 3 of 7)	HERV15-int|LTR|ERV1	23611	NM_001159878	11055		NM_007009	ENSG00000042813	ZPBP	SPGF66|ZPBP1	zona pellucida binding protein	protein-coding
28312	chr10	46267151	46267580	+	0	NA	intron (NR_103827, intron 1 of 4)	intron (NR_103827, intron 1 of 4)	2243	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
233867	chrX	1536801	1538480	+	0	NA	promoter-TSS (NM_178129)	promoter-TSS (NM_178129)	-455	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
24795	chr10	10021	10680	+	0	NA	promoter-TSS (NR_149138)	promoter-TSS (NR_149138)	-857	NR_149138	102724130		NR_149137		LINC02564	-	long intergenic non-protein coding RNA 2564	ncRNA
103869	chr17	79749821	79750300	+	0	NA	Intergenic	Charlie2b|DNA|hAT-Charlie	19117	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
227683	chr9	92998901	92999700	+	0	NA	intron (NM_001369951, intron 3 of 17)	L1PA5|LINE|L1	15644	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
142040	chr20	1685251	1686300	+	0	NA	Intergenic	Intergenic	-27996	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
231656	chr9	131657801	131658000	+	0	NA	intron (NM_001377935, intron 1 of 26)	L1ME3E|LINE|L1	-6497	NM_001377936	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
85291	chr16	48617071	48617250	+	0	NA	Intergenic	AluY|SINE|Alu	-6980	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
81299	chr16	4685271	4685430	+	0	NA	intron (NM_001142289, intron 15 of 15)	intron (NM_001142289, intron 15 of 15)	-8343	NM_032349	84309		NM_032349	ENSG00000168101	NUDT16L1	SDOS|TIRR	nudix hydrolase 16 like 1	protein-coding
207762	chr7	50145671	50146030	+	0	NA	intron (NM_001161834, intron 7 of 8)	intron (NM_001161834, intron 7 of 8)	49967	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
192610	chr6	26032901	26034930	+	0	NA	promoter-TSS (NM_003513)	promoter-TSS (NM_003513)	-297	NM_003513	8335		NM_003513	ENSG00000278463	H2AC4	H2A/m|H2AC8|H2AFM|HIST1H2AB	H2A clustered histone 4	protein-coding
131150	chr2	91518271	91519180	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	141224	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
210782	chr7	100741101	100742230	+	0	NA	intron (NM_173059, intron 7 of 45)	SVA_F|Retroposon|SVA	8070	NR_111918	7455		NM_003386	ENSG00000146839	ZAN	-	zonadhesin	protein-coding
137578	chr2	197265951	197266050	+	0	NA	intron (NR_046837, intron 5 of 5)	intron (NR_046837, intron 5 of 5)	36519	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
205526	chr7	18521871	18522280	+	0	NA	intron (NM_001204147, intron 1 of 9)	intron (NM_001204147, intron 1 of 9)	12805	NM_001204147	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
191493	chr6	11224221	11225830	+	0	NA	intron (NM_001142393, intron 2 of 7)	intron (NM_001142393, intron 2 of 7)	7643	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
165342	chr3	88141971	88142400	+	0	NA	3' UTR (NM_001366097, exon 8 of 8)	3' UTR (NM_001366097, exon 8 of 8)	7681	NM_001195308	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
140873	chr2	237554021	237554280	+	0	NA	non-coding (NR_104019, exon 17 of 17)	non-coding (NR_104019, exon 17 of 17)	-12424	NM_015893	51052		NM_015893	ENSG00000071677	PRLH	PRH|PRRP	prolactin releasing hormone	protein-coding
53437	chr12	65168801	65170000	+	0	NA	promoter-TSS (NM_001167614)	promoter-TSS (NM_001167614)	-183	NM_001167614	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
74835	chr15	63502171	63502430	+	0	NA	Intergenic	L2b|LINE|L2	-2211	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
230553	chr9	128419021	128419280	+	0	NA	promoter-TSS (NM_001286760)	promoter-TSS (NM_001286760)	-10	NM_001286760	51148		NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
229414	chr9	121222571	121222900	+	0	NA	intron (NM_001353053, intron 5 of 25)	MER50|LTR|ERV1	-20866	NM_016322	51552		NM_016322	ENSG00000119396	RAB14	FBP|RAB-14	RAB14, member RAS oncogene family	protein-coding
9645	chr1	52602051	52603780	+	0	NA	intron (NM_015696, intron 1 of 2)	CpG	544	NM_015696	2882		NM_015696	ENSG00000116157	GPX7	CL683|GPX6|GPx-7|GSHPx-7|NPGPx	glutathione peroxidase 7	protein-coding
24760	chr1	248838701	248839850	+	0	NA	intron (NM_024836, intron 1 of 3)	intron (NM_024836, intron 1 of 3)	1051	NM_024836	79894		NM_024836	ENSG00000171161	ZNF672	-	zinc finger protein 672	protein-coding
188340	chr5	151298171	151298350	+	0	NA	intron (NM_181774, intron 2 of 9)	MER102c|DNA|hAT-Charlie	5506	NM_001145017	285641		NM_181774	ENSG00000186334	SLC36A3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 member 3	protein-coding
194264	chr6	32587471	32588600	+	0	NA	intron (NM_002124, intron 1 of 5)	intron (NM_002124, intron 1 of 5)	1801	NM_002124	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
231906	chr9	133090201	133090400	+	0	NA	Intergenic	Intergenic	7761	NR_001275	1057		NM_001808	ENSG00000170827	CELP	CELL|cell1|cell2|cell3	carboxyl ester lipase pseudogene	pseudo
172317	chr4	1626571	1626730	+	0	NA	Intergenic	Intergenic	57341	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
197305	chr6	72580371	72580530	+	0	NA	Intergenic	Intergenic	-41614	NM_001160132	56479		NM_019842	ENSG00000185760	KCNQ5	Kv7.5|MRD46	potassium voltage-gated channel subfamily Q member 5	protein-coding
188875	chr5	159427071	159427930	+	0	NA	Intergenic	Intergenic	38776	NR_027110	285627		NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
27022	chr10	26845501	26845700	+	0	NA	intron (NM_001178116, intron 1 of 11)	AluSq2|SINE|Alu	15358	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
162719	chr3	49011901	49012130	+	0	NA	exon (NM_018031, exon 2 of 6)	exon (NM_018031, exon 2 of 6)	4410	NM_001320547	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
225393	chr9	35042951	35043650	+	0	NA	exon (NM_001040412, exon 3 of 3)	exon (NM_001040412, exon 3 of 3)	1060	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
177736	chr4	122455171	122455530	+	0	NA	intron (NM_000586, intron 2 of 3)	intron (NM_000586, intron 2 of 3)	1375	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
20119	chr1	192519951	192520730	+	0	NA	Intergenic	Intergenic	-55433	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
200446	chr6	135052201	135052400	+	0	NA	intron (NM_006620, intron 1 of 17)	intron (NM_006620, intron 1 of 17)	2522	NM_006620	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
152041	chr22	19495901	19496100	+	0	NA	exon (NM_003504, exon 7 of 19)	exon (NM_003504, exon 7 of 19)	16080	NR_161281	8318		NM_003504	ENSG00000093009	CDC45	CDC45L|CDC45L2|MGORS7|PORC-PI-1	cell division cycle 45	protein-coding
78205	chr15	90593101	90593500	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	63377	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
10194	chr1	61746451	61747030	+	0	NA	intron (NM_176877, intron 1 of 42)	L1ME4a|LINE|L1	4260	NM_176877	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
46177	chr11	123195071	123196350	+	0	NA	promoter-TSS (NM_024769)	promoter-TSS (NM_024769)	-462	NM_024769	79827		NM_024769	ENSG00000166250	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR like membrane protein	protein-coding
101848	chr17	74190151	74190780	+	0	NA	Intergenic	Intergenic	-13213	NM_000999	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
43913	chr11	90134501	90134880	+	0	NA	promoter-TSS (NM_001300930)	promoter-TSS (NM_001300930)	27	NM_001300930	10003		NM_005467	ENSG00000077616	NAALAD2	GCP3|GCPIII|GPCIII	N-acetylated alpha-linked acidic dipeptidase 2	protein-coding
87354	chr16	70371551	70372050	+	0	NA	intron (NM_018332, intron 11 of 11)	intron (NM_018332, intron 11 of 11)	24897	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
162687	chr3	48940571	48941130	+	0	NA	intron (NM_001349214, intron 3 of 15)	intron (NM_001349214, intron 3 of 15)	-21465	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
85562	chr16	53449601	53450480	+	0	NA	intron (NM_001323609, intron 4 of 20)	intron (NM_001323609, intron 4 of 20)	14421	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
109873	chr19	1244071	1245580	+	0	NA	TTS (NM_001687)	TTS (NM_001687)	3074	NM_001687	513		NM_001687	ENSG00000099624	ATP5F1D	ATP5D|MC5DN5	ATP synthase F1 subunit delta	protein-coding
108756	chr18	77121251	77122050	+	0	NA	intron (NM_001025100, intron 1 of 3)	intron (NM_001025100, intron 1 of 3)	11133	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
180170	chr5	1447621	1448280	+	0	NA	Intergenic	L3|LINE|CR1	-2510	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
227784	chr9	93128921	93129180	+	0	NA	intron (NM_004148, intron 1 of 3)	intron (NM_004148, intron 1 of 3)	5201	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
13040	chr1	111228551	111228650	+	0	NA	intron (NM_001025197, intron 1 of 9)	intron (NM_001025197, intron 1 of 9)	887	NM_004000	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
195920	chr6	41779321	41782200	+	0	NA	promoter-TSS (NM_013397)	promoter-TSS (NM_013397)	-22	NM_013397	29964		NM_013397	ENSG00000278224	PRICKLE4	C6orf49|OBTP|OEBT|TOMM6	prickle planar cell polarity protein 4	protein-coding
220211	chr8	96162221	96162480	+	0	NA	Intergenic	Intergenic	-1544	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
84624	chr16	30704421	30704880	+	0	NA	intron (NM_006662, intron 4 of 33)	AluJb|SINE|Alu	5479	NM_006662	10847		NM_006662	ENSG00000080603	SRCAP	DEHMBA|DOMO1|EAF1|FLHS|SWR1	Snf2 related CREBBP activator protein	protein-coding
15646	chr1	150763801	150764000	+	0	NA	intron (NM_001199739, intron 2 of 6)	L2a|LINE|L2	1878	NM_004079	1520		NM_004079	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
70212	chr14	100573021	100573280	+	0	NA	intron (NM_001385093, intron 1 of 5)	L2b|LINE|L2	-3358	NM_020836	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
14679	chr1	145844151	145844250	+	0	NA	3' UTR (NM_001303456, exon 15 of 15)	3' UTR (NM_001303456, exon 15 of 15)	-1430	NM_001012758	200035		NM_001012758	ENSG00000186364	NUDT17	-	nudix hydrolase 17	protein-coding
97026	chr17	42307401	42308030	+	0	NA	exon (NM_001288720, exon 14 of 18)	exon (NM_001288720, exon 14 of 18)	19659	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
53955	chr12	71869201	71869730	+	0	NA	intron (NM_001146214, intron 2 of 17)	AluSx|SINE|Alu	-18482	NR_024072	729633		NR_024072		MRS2P2	-	MRS2 pseudogene 2	pseudo
63103	chr13	113298721	113298980	+	0	NA	intron (NM_005561, intron 1 of 8)	intron (NM_005561, intron 1 of 8)	1611	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
79551	chr16	963071	963430	+	0	NA	intron (NM_001352017, intron 1 of 11)	intron (NM_001352017, intron 1 of 11)	7734	NM_022773	64788		NM_022773	ENSG00000103227	LMF1	C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A	lipase maturation factor 1	protein-coding
115245	chr19	14521251	14522900	+	0	NA	intron (NM_001313964, intron 2 of 3)	intron (NM_001313964, intron 2 of 3)	-3678	NM_006145	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
30422	chr10	79007421	79007680	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	59898	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
45594	chr11	118893971	118894500	+	0	NA	exon (NM_001716, exon 2 of 2)	exon (NM_001716, exon 2 of 2)	843	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
178061	chr4	140046001	140046200	+	0	NA	intron (NM_018717, intron 1 of 4)	MLT1I|LTR|ERVL-MaLR	-81915	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
42145	chr11	67656901	67657450	+	0	NA	Intergenic	AluY|SINE|Alu	-6445	NM_080658	91703		NM_080658	ENSG00000132744	ACY3	ACY-3|HCBP1	aminoacylase 3	protein-coding
49397	chr12	22478901	22479100	+	0	NA	intron (NR_169598, intron 14 of 24)	L1ME4b|LINE|L1	65197	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
148892	chr21	8461801	8462250	+	0	NA	Intergenic	(TCTC)n|Simple_repeat|Simple_repeat	20879	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
189082	chr5	170284301	170284500	+	0	NA	intron (NM_005565, intron 3 of 20)	L1MEc|LINE|L1	13377	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
212356	chr7	127591701	127592100	+	0	NA	TTS (NM_001662)	TTS (NM_001662)	-1836	NM_020369	29999		NM_020369	ENSG00000106328	FSCN3	-	fascin actin-bundling protein 3	protein-coding
2516	chr1	9704601	9705030	+	0	NA	intron (NM_001350234, intron 2 of 23)	intron (NM_001350234, intron 2 of 23)	13348	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
7159	chr1	32240221	32241800	+	0	NA	intron (NR_026850, intron 1 of 6)	CpG	700	NR_026850	339483		NM_178546	ENSG00000291132	MTMR9LP	MTMR9L	myotubularin related protein 9 like, pseudogene	pseudo
32950	chr10	110413021	110413650	+	0	NA	Intergenic	MIR|SINE|MIR	-84572	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
204471	chr7	4723801	4724000	+	0	NA	intron (NM_001037165, intron 1 of 8)	AluJo|SINE|Alu	41605	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
48088	chr12	7199851	7200030	+	0	NA	intron (NM_001351131, intron 6 of 15)	SVA_D|Retroposon|SVA	10254	NM_001351128	5830		NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
222036	chr8	130205671	130205830	+	0	NA	intron (NM_001362924, intron 5 of 30)	MER46C|DNA|TcMar-Tigger	90783	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
233438	chr9	137616801	137617350	+	0	NA	intron (NR_122035, intron 2 of 2)	intron (NR_122035, intron 2 of 2)	1454	NR_122036	85026		NM_032937	ENSG00000203993	ARRDC1-AS1	C9orf37	ARRDC1 antisense RNA 1	ncRNA
125992	chr2	25300071	25300230	+	0	NA	exon (NM_175629, exon 3 of 23)	exon (NM_175629, exon 3 of 23)	28571	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
84977	chr16	31451401	31452000	+	0	NA	Intergenic	L1MC4|LINE|L1	-6604	NM_001288767	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
177113	chr4	108092421	108092880	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	74147	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
129430	chr2	69438601	69438800	+	0	NA	intron (NM_001374284, intron 1 of 8)	intron (NM_001374284, intron 1 of 8)	867	NM_001374284	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
77297	chr15	82343901	82344100	+	0	NA	intron (NM_001164465, intron 7 of 8)	intron (NM_001164465, intron 7 of 8)	5475	NM_001164465	647042		NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family like 10	protein-coding
2442	chr1	9625251	9625350	+	0	NA	Intergenic	AluJr4|SINE|Alu	-26431	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
67093	chr14	68274871	68275180	+	0	NA	intron (NM_133509, intron 7 of 10)	L1MC5a|LINE|L1	353762	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
225142	chr9	33721751	33722470	+	0	NA	Intergenic	Intergenic	16306	NR_109755	101929688		NR_109755	ENSG00000235481	UBE2R2-AS1	LINC01251	UBE2R2 antisense RNA 1	ncRNA
174815	chr4	48132651	48133150	+	0	NA	intron (NM_003328, intron 1 of 14)	AluSz|SINE|Alu	1350	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
3792	chr1	16709451	16711250	+	0	NA	intron (NR_026567, intron 1 of 10)	intron (NR_026567, intron 1 of 10)	9807	NR_026567	284729		NR_026567		ESPNP	dJ1182A14.1	espin pseudogene	pseudo
62265	chr13	98570271	98570430	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	6757	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
16062	chr1	153262501	153262880	+	0	NA	TTS (NM_000427)	TTS (NM_000427)	3003	NM_000427	4014		NM_000427	ENSG00000203782	LORICRIN	LOR	loricrin cornified envelope precursor protein	protein-coding
59986	chr13	32351051	32351350	+	0	NA	intron (NM_000059, intron 13 of 26)	LTR12_|LTR|ERV1	35692	NM_000059	675		NM_000059	ENSG00000139618	BRCA2	BRCC2|BROVCA2|FACD|FAD|FAD1|FANCD|FANCD1|GLM3|PNCA2|XRCC11	BRCA2 DNA repair associated	protein-coding
172084	chr4	1042201	1042900	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	30086	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
156937	chr22	42313721	42314300	+	0	NA	Intergenic	L2a|LINE|L2	-30083	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
133109	chr2	112647501	112647730	+	0	NA	intron (NM_005415, intron 3 of 10)	intron (NM_005415, intron 3 of 10)	1676	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
203107	chr6	166487601	166488630	+	0	NA	intron (NM_021135, intron 10 of 20)	intron (NM_021135, intron 10 of 20)	21318	NR_031734	100302141		NR_031734	ENSG00000222958	MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	ncRNA
225099	chr9	33426821	33427350	+	0	NA	Intergenic	Intergenic	20508	NM_004925	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
103735	chr17	78878451	78878750	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	24601	NM_001243540	100653515		NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
6318	chr1	27645571	27645730	+	0	NA	Intergenic	Intergenic	-10465	NM_005248	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
165193	chr3	72523551	72523850	+	0	NA	Intergenic	Intergenic	-77077	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
70724	chr14	103347901	103348780	+	0	NA	Intergenic	L1ME2z|LINE|L1	10491	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
11508	chr1	90926071	90926700	+	0	NA	intron (NM_032186, intron 2 of 3)	MER72|LTR|ERV1	74626	NR_146610	105378854		NR_146610		LINC01763	-	long intergenic non-protein coding RNA 1763	ncRNA
87633	chr16	74506121	74506580	+	0	NA	intron (NM_001145667, intron 3 of 25)	AluY|SINE|Alu	-84209	NM_001385192	497190		NM_001011880	ENSG00000140839	CLEC18B	MRCL2	C-type lectin domain family 18 member B	protein-coding
62290	chr13	98978401	98978600	+	0	NA	promoter-TSS (NM_001366681)	promoter-TSS (NM_001366681)	-436	NM_001130050	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
44270	chr11	102269901	102270350	+	0	NA	Intergenic	Intergenic	-47359	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
160715	chr3	32420121	32421230	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	28822	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
144077	chr20	33699671	33699850	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-13375	NM_005225	1869		NM_005225	ENSG00000101412	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
104255	chr17	80751771	80752330	+	0	NA	intron (NM_020761, intron 5 of 33)	intron (NM_020761, intron 5 of 33)	53582	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
120381	chr19	43641571	43641930	+	0	NA	Intergenic	MIR3|SINE|MIR	-1900	NM_145296	199731		NM_145296	ENSG00000105767	CADM4	IGSF4C|NECL4|Necl-4|TSLL2|synCAM4	cell adhesion molecule 4	protein-coding
80077	chr16	1993601	1995300	+	0	NA	TTS (NM_004209)	TTS (NM_004209)	4480	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
40809	chr11	64914251	64914730	+	0	NA	exon (NM_001367972, exon 2 of 41)	exon (NM_001367972, exon 2 of 41)	2719	NM_001367972	23130		NM_015104	ENSG00000110046	ATG2A	BLTP4A	autophagy related 2A	protein-coding
93645	chr17	19182821	19183080	+	0	NA	Intergenic	AluJb|SINE|Alu	-5066	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
75705	chr15	68056421	68056780	+	0	NA	intron (NM_001320687, intron 2 of 14)	intron (NM_001320687, intron 2 of 14)	2024	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
56568	chr12	117105721	117106180	+	0	NA	intron (NR_120464, intron 2 of 2)	LTR8A|LTR|ERV1	6483	NR_120464	101928244		NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
187041	chr5	139847521	139849230	+	0	NA	exon (NM_004883, exon 10 of 10)	exon (NM_004883, exon 10 of 10)	52567	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
213614	chr7	139426851	139427380	+	0	NA	intron (NR_033999, intron 1 of 2)	intron (NR_033999, intron 1 of 2)	411	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
124389	chr19	58394121	58394380	+	0	NA	TTS (NR_162103)	TTS (NR_162103)	886	NR_162103	113218487		NR_162103		MIR10394	-	microRNA 10394	ncRNA
154045	chr22	30575401	30575600	+	0	NA	promoter-TSS (NM_001318103)	promoter-TSS (NM_001318103)	-835	NM_001318104	9514		NM_004861	ENSG00000128242	GAL3ST1	CST	galactose-3-O-sulfotransferase 1	protein-coding
210850	chr7	101087301	101087780	+	0	NA	exon (NM_030961, exon 3 of 3)	exon (NM_030961, exon 3 of 3)	2059	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
63078	chr13	113175821	113177100	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	17806	NM_001256134	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
155443	chr22	38465751	38465850	+	0	NA	Intergenic	Intergenic	-2262	NM_016657	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
25431	chr10	6577821	6578930	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	1901	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
21439	chr1	205442451	205442550	+	0	NA	intron (NR_103783, intron 1 of 1)	intron (NR_103783, intron 1 of 1)	5898	NR_029893	442891		NR_029893	ENSG00000199059	MIR135B	MIRN135B|mir-135b	microRNA 135b	ncRNA
181457	chr5	41891121	41891380	+	0	NA	Intergenic	MER4D|LTR|ERV1	-13094	NM_175921	285636		NM_175921	ENSG00000205765	RIMOC1	C5orf51	RAB7A interacting MON1-CCZ1 complex subunit 1	protein-coding
64334	chr14	23953121	23954730	+	0	NA	non-coding (NR_023921, exon 1 of 2)	non-coding (NR_023921, exon 1 of 2)	155	NM_001282990	10901		NM_021004	ENSG00000157326	DHRS4	CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2	dehydrogenase/reductase 4	protein-coding
163056	chr3	49930971	49931300	+	0	NA	Intergenic	Intergenic	-1123	NM_001142501	84315		NM_032355	ENSG00000164077	MON1A	SAND1	MON1 homolog A, secretory trafficking associated	protein-coding
111939	chr19	4788701	4789100	+	0	NA	Intergenic	Intergenic	-2834	NM_018708	55527		NM_018708	ENSG00000141965	FEM1A	EPRAP	fem-1 homolog A	protein-coding
151626	chr22	15776451	15776550	+	0	NA	intron (NR_132385, intron 3 of 3)	intron (NR_132385, intron 3 of 3)	-8454	NR_122113	503637		NR_122113	ENSG00000206195	DUXAP8	-	double homeobox A pseudogene 8	pseudo
98457	chr17	47095201	47095930	+	0	NA	Intergenic	L1M4|LINE|L1	93730	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
164598	chr3	66224801	66225330	+	0	NA	intron (NM_001164796, intron 1 of 8).2	THE1B-int|LTR|ERVL-MaLR	4062	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
44750	chr11	112024451	112025950	+	0	NA	promoter-TSS (NM_001372040)	promoter-TSS (NM_001372040)	-208	NM_001372040	1737		NM_001931	ENSG00000150768	DLAT	DLTA|E2|PBC|PDC-E2|PDCE2	dihydrolipoamide S-acetyltransferase	protein-coding
97396	chr17	43367651	43368700	+	0	NA	Intergenic	Intergenic	20723	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
120887	chr19	45583071	45583250	+	0	NA	intron (NM_025136, intron 1 of 1)	AluY|SINE|Alu	1642	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
223911	chr9	461471	461630	+	0	NA	intron (NM_203447, intron 46 of 47)	AluJb|SINE|Alu	-8741	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
88791	chr16	87343301	87343780	+	0	NA	intron (NM_024735, intron 4 of 8)	intron (NM_024735, intron 4 of 8)	26031	NR_135180	101928659		NR_135180	ENSG00000270006	C16orf95-DT	-	C16orf95 divergent transcript	ncRNA
51002	chr12	49662701	49663780	+	0	NA	intron (NM_175736, intron 4 of 25)	intron (NM_175736, intron 4 of 25)	39679	NM_001379030	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
56739	chr12	120131251	120131350	+	0	NA	exon (NM_006836, exon 55 of 58)	exon (NM_006836, exon 55 of 58)	-14547	NM_006861	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
150523	chr21	42957451	42957650	+	0	NA	Intergenic	AluSz|SINE|Alu	-6536	NR_049889	100847013		NR_049889	ENSG00000264580	MIR5692B	-	microRNA 5692b	ncRNA
119344	chr19	39974421	39975150	+	0	NA	exon (NM_153001, exon 6 of 11)	exon (NM_153001, exon 6 of 11)	3620	NM_006503	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
130477	chr2	85554101	85554500	+	0	NA	exon (NM_001142269, exon 6 of 14)	exon (NM_001142269, exon 6 of 14)	7193	NM_001311312	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
200479	chr6	135209901	135210650	+	0	NA	intron (NR_134961, intron 15 of 15)	intron (NR_134961, intron 15 of 15)	-28885	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
106721	chr18	23486321	23487180	+	0	NA	Intergenic	MER41G|LTR|ERV1	-16720	NM_001276342	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
219023	chr8	64580371	64581080	+	0	NA	5' UTR (NM_152414, exon 1 of 1)	5' UTR (NM_152414, exon 1 of 1)	360	NM_152414	27319		NM_152414	ENSG00000180828	BHLHE22	BHLHB5|Beta3|Beta3a|CAGL85|TNRC20	basic helix-loop-helix family member e22	protein-coding
144226	chr20	34377021	34377600	+	0	NA	intron (NM_031483, intron 2 of 24)	AluSz6|SINE|Alu	14037	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
227298	chr9	89412071	89412630	+	0	NA	intron (NM_001371201, intron 2 of 18)	intron (NM_001371201, intron 2 of 18)	67540	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
4817	chr1	23608321	23608580	+	0	NA	Intergenic	L2b|LINE|L2	-18884	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
195452	chr6	36983671	36984080	+	0	NA	intron (NM_001271641, intron 1 of 11)	intron (NM_001271641, intron 1 of 11)	2321	NM_001271641	23787		NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
213713	chr7	140254021	140254280	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	76889	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
72046	chr15	28737121	28738600	+	0	NA	non-coding (NR_026589, exon 1 of 9)	non-coding (NR_026589, exon 1 of 9)	277	NR_026589	440253		NR_026589		WHAMMP2	WHAMML2|WHDC1L2	WHAMM pseudogene 2	pseudo
98935	chr17	48627621	48628050	+	0	NA	Intergenic	(TCCTGC)n|Simple_repeat|Simple_repeat	-1477	NM_024017	3219		NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
239071	chrY	7318171	7318330	+	0	NA	intron (NR_028062, intron 2 of 7)	intron (NR_028062, intron 2 of 7)	44278	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
198285	chr6	99867071	99867230	+	0	NA	Intergenic	Intergenic	-126888	NR_038384	728012		NR_038384	ENSG00000229315	MCHR2-AS1	-	MCHR2 antisense RNA 1	ncRNA
27392	chr10	31299171	31299330	+	0	NA	Intergenic	Intergenic	-19167	NM_001323638	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
218155	chr8	41900321	41900650	+	0	NA	Intergenic	(CATCAT)n|Simple_repeat|Simple_repeat	-3744	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
34875	chr11	360851	361200	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-8474	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
50346	chr12	47155751	47156530	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	-31672	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
92700	chr17	14115021	14115330	+	0	NA	intron (NM_001303, intron 4 of 6)	intron (NM_001303, intron 4 of 6)	45671	NM_001303	1352		NM_001303	ENSG00000006695	COX10	MC4DN3	cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10	protein-coding
221352	chr8	123242751	123243330	+	0	NA	intron (NM_001204180, intron 2 of 5)	AluSx3|SINE|Alu	-1663	NM_032847	84933		NM_032847	ENSG00000189376	C8orf76	-	chromosome 8 open reading frame 76	protein-coding
57531	chr12	122144201	122144400	+	0	NA	3' UTR (NM_014938, exon 17 of 17)	3' UTR (NM_014938, exon 17 of 17)	-23419	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
76440	chr15	74803921	74804180	+	0	NA	TTS (NM_001354988)	TTS (NM_001354988)	-8785	NM_021819	79748		NM_021819	ENSG00000140506	LMAN1L	ERGIC-53L|ERGL	lectin, mannose binding 1 like	protein-coding
191215	chr6	5665071	5665830	+	0	NA	non-coding (NR_110842, exon 4 of 4)	non-coding (NR_110842, exon 4 of 4)	29822	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
211032	chr7	102420451	102420550	+	0	NA	intron (NR_038967, intron 8 of 8)	intron (NR_038967, intron 8 of 8)	-13030	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
37566	chr11	18775701	18776230	+	0	NA	intron (NM_001039970, intron 1 of 14)	intron (NM_001039970, intron 1 of 14)	15833	NM_006906	84867		NM_006906	ENSG00000110786	PTPN5	PTPSTEP|STEP|STEP61	protein tyrosine phosphatase non-receptor type 5	protein-coding
33764	chr10	122544201	122544950	+	0	NA	Intergenic	Intergenic	-16179	NM_001320644	1755		NM_004406	ENSG00000187908	DMBT1	GP340|SAG|SALSA|muclin	deleted in malignant brain tumors 1	protein-coding
71154	chr14	105016401	105016650	+	0	NA	intron (NM_017955, intron 1 of 1)	intron (NM_017955, intron 1 of 1)	4558	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
49199	chr12	15874701	15874900	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-7587	NM_007178	11171		NM_007178	ENSG00000023734	STRAP	MAWD|PT-WD|UNRIP	serine/threonine kinase receptor associated protein	protein-coding
88982	chr16	87897451	87898380	+	0	NA	intron (NR_159798, intron 5 of 7)	MLT1G|LTR|ERVL-MaLR	-28408	NM_003486	8140		NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding
222584	chr8	140668201	140668550	+	0	NA	exon (NM_001352699, exon 34 of 36)	exon (NM_001352699, exon 34 of 36)	-32742	NM_012154	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
227266	chr9	89368271	89368630	+	0	NA	intron (NR_163887, intron 13 of 15)	intron (NR_163887, intron 13 of 15)	49599	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
202475	chr6	158239071	158239230	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	70800	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
171864	chr4	744921	745830	+	0	NA	intron (NM_001317836, intron 9 of 11)	CpG	36473	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
67323	chr14	69627501	69628150	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	16229	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
15428	chr1	150270271	150270430	+	0	NA	Intergenic	Intergenic	-1141	NR_045035	51107		NM_016022	ENSG00000117362	APH1A	6530402N02Rik|APH-1|APH-1A|CGI-78	aph-1 homolog A, gamma-secretase subunit	protein-coding
224219	chr9	5623701	5624100	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-5207	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
180624	chr5	16626871	16627430	+	0	NA	intron (NR_109946, intron 3 of 3)	intron (NR_109946, intron 3 of 3)	-10092	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
197667	chr6	85460321	85460700	+	0	NA	intron (NM_002526, intron 1 of 8)	intron (NM_002526, intron 1 of 8)	10427	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
52794	chr12	56719671	56720230	+	0	NA	exon (NM_001113203, exon 3 of 11)	exon (NM_001113203, exon 3 of 11)	5349	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
67475	chr14	70905921	70906330	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-1334	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
219329	chr8	70212771	70213900	+	0	NA	intron (NM_001321707, intron 4 of 22)	intron (NM_001321707, intron 4 of 22)	-142083	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
1055	chr1	1896651	1897100	+	0	NA	Intergenic	AluSx3|SINE|Alu	5695	NR_168263	105378949		NR_168263	ENSG00000231050	GNB1-DT	-	GNB1 divergent transcript	ncRNA
121704	chr19	47581501	47581900	+	0	NA	Intergenic	Intergenic	-8552	NM_001277075	84215		NM_032255	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
111751	chr19	4367521	4368100	+	0	NA	intron (NM_001199943, intron 1 of 8)	intron (NM_001199943, intron 1 of 8)	24248	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
168035	chr3	136908601	136909530	+	0	NA	intron (NM_001291999, intron 1 of 3)	MSTD|LTR|ERVL-MaLR	-21437	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
135875	chr2	170975421	170975900	+	0	NA	Intergenic	Intergenic	46407	NM_015530	26003		NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding
4515	chr1	21779671	21780880	+	0	NA	intron (NM_001350166, intron 1 of 26)	L1MB5|LINE|L1	2874	NM_001350164	84196		NM_032236	ENSG00000090686	USP48	DFNA85|RAP1GA1|USP31	ubiquitin specific peptidase 48	protein-coding
96692	chr17	41329151	41329500	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-13615	NM_031964	83902		NM_031964	ENSG00000186860	KRTAP17-1	KAP17.1|KRTAP16.1|KRTAP17.1	keratin associated protein 17-1	protein-coding
135340	chr2	160389571	160389930	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	18132	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
177360	chr4	110212301	110212500	+	0	NA	Intergenic	AluY|SINE|Alu	-13785	NM_024090	79071		NM_024090	ENSG00000170522	ELOVL6	FACE|FAE|LCE|hELO2	ELOVL fatty acid elongase 6	protein-coding
64653	chr14	31450051	31450350	+	0	NA	intron (NM_080664, intron 2 of 2)	intron (NM_080664, intron 2 of 2)	7306	NM_080664	112487		NM_080664	ENSG00000129480	DTD2	ATD|C14orf126	D-aminoacyl-tRNA deacylase 2	protein-coding
122928	chr19	50667721	50668650	+	0	NA	exon (NM_016148, exon 23 of 24)	exon (NM_016148, exon 23 of 24)	18740	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
169691	chr3	172045271	172045430	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	4819	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
161152	chr3	39053621	39053880	+	0	NA	intron (NM_001346228, intron 1 of 18)	intron (NM_001346228, intron 1 of 18)	1458	NM_001346228	57599		NM_020839	ENSG00000114742	WDR48	Bun62|P80|SPG60|UAF1	WD repeat domain 48	protein-coding
12282	chr1	100543401	100543930	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	5526	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
46379	chr11	126268171	126270200	+	0	NA	promoter-TSS (NM_003139)	promoter-TSS (NM_003139)	31	NR_037648	55572		NM_017547	ENSG00000110074	FOXRED1	FP634|H17|MC1DN19	FAD dependent oxidoreductase domain containing 1	protein-coding
199469	chr6	118367371	118367530	+	0	NA	Intergenic	Intergenic	-133923	NR_002730	23629		NM_012107		BRD7P3	BP75	bromodomain containing 7 pseudogene 3	pseudo
66085	chr14	59229921	59230180	+	0	NA	intron (NM_001270520, intron 1 of 24)	intron (NM_001270520, intron 1 of 24)	-33391	NM_014992	23002		NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
175599	chr4	75698251	75699180	+	0	NA	Intergenic	AluJb|SINE|Alu	-25232	NM_203504	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
121603	chr19	47414171	47414330	+	0	NA	intron (NM_001009813, intron 6 of 12)	intron (NM_001009813, intron 6 of 12)	5277	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
49027	chr12	14366901	14367950	+	0	NA	intron (NM_001286515, intron 1 of 12)	intron (NM_001286515, intron 1 of 12)	1743	NM_001286515	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
20317	chr1	197454321	197454780	+	0	NA	intron (NR_047564, intron 11 of 11)	intron (NR_047564, intron 11 of 11)	186298	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
95477	chr17	36201501	36201950	+	0	NA	Intergenic	Intergenic	-4967	NM_002983	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
19804	chr1	182604001	182605500	+	0	NA	promoter-TSS (NM_002928)	promoter-TSS (NM_002928)	-361	NM_002928	6004		NM_002928	ENSG00000143333	RGS16	A28-RGS14|A28-RGS14P|RGS-R	regulator of G protein signaling 16	protein-coding
13611	chr1	116398701	116398900	+	0	NA	TTS (NR_027645)	TTS (NR_027645)	15430	NM_001160234	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
125485	chr2	12493021	12493480	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-223622	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
14861	chr1	146400251	146400700	+	0	NA	Intergenic	LTR51|LTR|ERV1	23668	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
124083	chr19	55630271	55630430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5784	NM_203374	147808		NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
196484	chr6	43608121	43608730	+	0	NA	intron (NM_006502, intron 9 of 10)	intron (NM_006502, intron 9 of 10)	18928	NM_001286216	54676		NM_019096	ENSG00000172432	GTPBP2	JABELS	GTP binding protein 2	protein-coding
105574	chr18	106311	106780	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-2520	NR_033770	727758		NR_033770	ENSG00000290877	ROCK1P1	ROCK1P	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
180723	chr5	31002321	31002400	+	0	NA	Intergenic	L1PB1|LINE|L1	-191326	NM_004932	1004		NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	cadherin 6	protein-coding
233361	chr9	137464351	137464730	+	0	NA	intron (NM_001098537, intron 26 of 34)	intron (NM_001098537, intron 26 of 34)	-5206	NM_001130969	26012		NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding
228561	chr9	101602051	101602430	+	0	NA	intron (NM_133445, intron 6 of 8)	intron (NM_133445, intron 6 of 8)	-7271	NM_147180	5535		NM_147180	ENSG00000188386	PPP3R2	PPP3RL	protein phosphatase 3 regulatory subunit B, beta	protein-coding
202562	chr6	158673471	158674130	+	0	NA	intron (NM_001318745, intron 2 of 14)	intron (NM_001318745, intron 2 of 14)	10397	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
113630	chr19	10327001	10327200	+	0	NA	intron (NM_133452, intron 3 of 12)	AluJr4|SINE|Alu	6429	NM_133452	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
97851	chr17	44970151	44971100	+	0	NA	Intergenic	Intergenic	-2322	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
132778	chr2	109871101	109871350	+	0	NA	Intergenic	Intergenic	-27207	NR_027145	100271835		NR_027144	ENSG00000284337	LIMS3-LOC440895	-	LIMS3-LOC440895 readthrough	ncRNA
120506	chr19	44806601	44806800	+	0	NA	Intergenic	Intergenic	-2359	NM_001013257	4059		NM_005581	ENSG00000187244	BCAM	AU|B-CAM|CD239|F8/G253|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding
213136	chr7	131378671	131378830	+	0	NA	intron (NM_001145354, intron 3 of 18)	AluJb|SINE|Alu	50874	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
102251	chr17	75265501	75266350	+	0	NA	TTS (NM_001370592)	TTS (NM_001370592)	-3562	NM_001172704	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
128252	chr2	54563971	54564130	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	5656	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
164566	chr3	64004121	64004580	+	0	NA	TTS (NM_001128149)	TTS (NM_001128149)	328	NR_038286	100507062		NR_038286	ENSG00000239653	PSMD6-AS2	-	PSMD6 antisense RNA 2	ncRNA
73462	chr15	43489121	43489850	+	0	NA	intron (NM_001355001, intron 4 of 28)	MER102c|DNA|hAT-Charlie	3671	NM_001141980	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
137986	chr2	201231951	201232680	+	0	NA	Intergenic	LTR41C|LTR|ERVL	-1128	NM_001228	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
121953	chr19	48473351	48473450	+	0	NA	intron (NM_017457, intron 5 of 11)	intron (NM_017457, intron 5 of 11)	4031	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
142454	chr20	4013771	4014300	+	0	NA	intron (NM_001134338, intron 1 of 6)	intron (NM_001134338, intron 1 of 6)	1523	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
193473	chr6	30533521	30534230	+	0	NA	Intergenic	AluSx1|SINE|Alu	17609	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
125618	chr2	19347471	19348780	+	0	NA	promoter-TSS (NR_039914)	promoter-TSS (NR_039914)	-304	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
14168	chr1	121393371	121393830	+	0	NA	TTS (NM_001329984)	TTS (NM_001329984)	4305	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
148725	chr21	7048671	7049180	+	0	NA	promoter-TSS (NM_001322047).3	promoter-TSS (NM_001322047).3	66	NM_001322044	102724219		NM_001322044		LINC03104	-	long intergenic non-protein coding RNA 3104	ncRNA
14400	chr1	144249321	144249630	+	0	NA	intron (NR_027356, intron 1 of 2).2	intron (NR_027356, intron 1 of 2).2	822	NR_027356	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
172536	chr4	2356001	2356200	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	8714	NM_001172660	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
167519	chr3	129276221	129276700	+	0	NA	intron (NM_016128, intron 23 of 23)	L1MC5|LINE|L1	-2372	NM_001370345	56941		NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine binding, ES cell specific	protein-coding
26696	chr10	22641271	22641430	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	72758	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
97158	chr17	42576771	42578200	+	0	NA	non-coding (NR_045669, exon 2 of 8)	non-coding (NR_045669, exon 2 of 8)	231	NR_045671	29893		NM_013290	ENSG00000131470	PSMC3IP	GT198|HOP2|HUMGT198A|ODG3|TBPIP	PSMC3 interacting protein	protein-coding
172811	chr4	3039451	3039750	+	0	NA	intron (NM_182982, intron 15 of 15)	AluSq2|SINE|Alu	34914	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
194786	chr6	34190001	34190550	+	0	NA	Intergenic	Intergenic	-34653	NM_001256809	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
108635	chr18	76466101	76466300	+	0	NA	intron (NM_014643, intron 1 of 6)	intron (NM_014643, intron 1 of 6)	-25452	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
162980	chr3	49706921	49707180	+	0	NA	intron (NR_135218, intron 26 of 38)	intron (NR_135218, intron 26 of 38)	12634	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
123065	chr19	51365201	51366800	+	0	NA	intron (NM_001985, intron 1 of 5)	intron (NM_001985, intron 1 of 5)	388	NM_001985	2109		NM_001985	ENSG00000105379	ETFB	FP585|MADD	electron transfer flavoprotein subunit beta	protein-coding
51194	chr12	50504501	50505980	+	0	NA	exon (NM_173602, exon 1 of 38)	exon (NM_173602, exon 1 of 38)	255	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
101438	chr17	67430401	67430980	+	0	NA	intron (NM_181671, intron 1 of 9)	AluJr|SINE|Alu	-40799	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
179758	chr5	260151	260450	+	0	NA	Intergenic	CpG	11224	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
39757	chr11	61890901	61892300	+	0	NA	promoter-TSS (NM_021727)	promoter-TSS (NM_021727)	-55	NM_021727	3995		NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
117704	chr19	28715351	28715450	+	0	NA	intron (NR_110759, intron 5 of 9)	L1MA1|LINE|L1	12294	NR_110759	100420587		NR_110759	ENSG00000283403	LOC100420587	-	SHC binding and spindle associated 1 pseudogene	pseudo
130499	chr2	85590371	85590730	+	0	NA	intron (NM_006634, intron 1 of 2)	L3|LINE|CR1	-5195	NM_016494	51255		NM_016494	ENSG00000168894	RNF181	HSPC238	ring finger protein 181	protein-coding
200497	chr6	135500251	135500350	+	0	NA	intron (NR_152842, intron 2 of 5)	L1MC4|LINE|L1	2499	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
127751	chr2	43676321	43676730	+	0	NA	promoter-TSS (NM_001101330)	promoter-TSS (NM_001101330)	-96	NM_001101330	728819		NM_001101330	ENSG00000223658	C1GALT1C1L	-	C1GALT1 specific chaperone 1 like	protein-coding
211266	chr7	102686171	102686700	+	0	NA	intron (NR_146066, intron 9 of 11)	AluSx1|SINE|Alu	-14700	NM_032959	246721		NM_032958	ENSG00000228049	POLR2J2	HRPB11B|RPB11b1	RNA polymerase II subunit J2	protein-coding
219590	chr8	79890471	79890950	+	0	NA	Intergenic	Intergenic	-18973	NR_110954	101927040		NR_110954	ENSG00000249328	LOC101927040	-	uncharacterized LOC101927040	ncRNA
109091	chr18	79961701	79962380	+	0	NA	Intergenic	Intergenic	-2603	NM_001136180	440498		NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding
195627	chr6	37821671	37822180	+	0	NA	intron (NM_021943, intron 1 of 5)	AluSx|SINE|Alu	2198	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
216793	chr8	22539271	22539430	+	0	NA	intron (NM_001243975, intron 12 of 12)	intron (NM_001243975, intron 12 of 12)	-12577	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
46520	chr11	128453651	128454250	+	0	NA	Intergenic	Intergenic	68360	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
225226	chr9	34187371	34187530	+	0	NA	intron (NM_001171201, intron 1 of 5)	intron (NM_001171201, intron 1 of 5)	8407	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
126141	chr2	26177521	26178050	+	0	NA	intron (NM_001168241, intron 2 of 5)	AluSx1|SINE|Alu	-2931	NM_001191033	150946		NM_001168241	ENSG00000157833	GAREM2	FAM59B|GAREML	GRB2 associated regulator of MAPK1 subtype 2	protein-coding
189734	chr5	176549851	176550200	+	0	NA	intron (NM_017675, intron 1 of 31)	intron (NM_017675, intron 1 of 31)	683	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
146709	chr20	50579801	50580350	+	0	NA	intron (NM_002827, intron 8 of 9)	intron (NM_002827, intron 8 of 9)	-5711	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
12966	chr1	110887901	110888900	+	0	NA	intron (NM_001040033, intron 2 of 8)	L1ME1|LINE|L1	15252	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
175320	chr4	68336301	68336500	+	0	NA	intron (NM_001031732, intron 4 of 16)	intron (NM_001031732, intron 4 of 16)	13690	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
170862	chr3	192566701	192566930	+	0	NA	intron (NM_001377293, intron 1 of 4)	intron (NM_001377293, intron 1 of 4)	51793	NR_046598	100873987		NR_046598	ENSG00000230126	FGF12-AS2	-	FGF12 antisense RNA 2	ncRNA
177905	chr4	129092921	129094480	+	0	NA	promoter-TSS (NM_144643)	promoter-TSS (NM_144643)	-12	NM_173487	132321		NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
67116	chr14	68481321	68481580	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	147337	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
134336	chr2	136113001	136114300	+	0	NA	TTS (NM_003467)	TTS (NM_003467)	2585	NM_001008540	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
192917	chr6	27670401	27670730	+	0	NA	Intergenic	tRNA-Arg-CGY_|tRNA|tRNA	-23470	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
966	chr1	1781801	1782000	+	0	NA	Intergenic	AluSx|SINE|Alu	-1869	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
32234	chr10	101830301	101832130	+	0	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	8656	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
151388	chr21	45975321	45976530	+	0	NA	TTS (NR_109931)	TTS (NR_109931)	2955	NR_109931	101928796		NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
114161	chr19	11350751	11351050	+	0	NA	exon (NM_001080503, exon 5 of 11)	exon (NM_001080503, exon 5 of 11)	4381	NM_001080503	126075		NM_001080503	ENSG00000183401	CCDC159	-	coiled-coil domain containing 159	protein-coding
216694	chr8	22166521	22166950	+	0	NA	intron (NR_033404, intron 1 of 15)	intron (NR_033404, intron 1 of 15)	1363	NR_033403	649		NM_001199	ENSG00000168487	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
181622	chr5	45658621	45658900	+	0	NA	intron (NM_021072, intron 1 of 7)	L1PA2|LINE|L1	37620	NM_021072	348980		NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|DEE24|EIEE24|GEFSP10|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
117603	chr19	22009971	22010130	+	0	NA	intron (NR_138252, intron 1 of 4)	AluY|SINE|Alu	893	NR_138252	7757		NM_007153	ENSG00000160321	ZNF208	PMIDP|ZNF95	zinc finger protein 208	protein-coding
231735	chr9	131964201	131964600	+	0	NA	intron (NM_001253881, intron 3 of 6)	(GTG)n|Simple_repeat|Simple_repeat	115467	NM_001253882	9442		NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|NEDSCAC|TRAP37	mediator complex subunit 27	protein-coding
202766	chr6	159055051	159055350	+	0	NA	Intergenic	Intergenic	-10048	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
26859	chr10	24889171	24889330	+	0	NA	intron (NM_020200, intron 3 of 8)	MLT1A0|LTR|ERVL-MaLR	63356	NM_020200	56952		NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding
140091	chr2	231455171	231456300	+	0	NA	TTS (NR_002921)	TTS (NR_002921)	201	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
120702	chr19	45173101	45173680	+	0	NA	intron (NM_001270891, intron 1 of 5)	L2c|LINE|L2	4847	NM_024108	79090		NM_024108	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex subunit 6A	protein-coding
210978	chr7	101817211	101817930	+	0	NA	promoter-TSS (NM_181552)	promoter-TSS (NM_181552)	-56	NM_181552	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
177655	chr4	121253451	121255480	+	0	NA	Intergenic	AluY|SINE|Alu	-26982	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
164762	chr3	69089671	69090580	+	0	NA	intron (NM_006407, intron 1 of 2)	intron (NM_006407, intron 1 of 2)	5188	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
131107	chr2	89853551	89853650	+	0	NA	Intergenic	Intergenic	-215693	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
21087	chr1	203322351	203323050	+	0	NA	Intergenic	Intergenic	17181	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
201109	chr6	142856451	142859450	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	87226	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
110010	chr19	1433671	1434200	+	0	NA	intron (NM_170711, intron 12 of 12)	intron (NM_170711, intron 12 of 12)	-4461	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
150090	chr21	37417221	37417880	+	0	NA	intron (NM_101395, intron 2 of 12)	(T)n|Simple_repeat|Simple_repeat	-1355	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
47906	chr12	6751271	6751500	+	0	NA	intron (NM_001382226, intron 4 of 8)	AluSz|SINE|Alu	1531	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
158318	chr22	50433001	50433200	+	0	NA	intron (NM_001351641, intron 12 of 23)	MIRc|SINE|MIR	25658	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
200511	chr6	135851401	135852300	+	0	NA	5' UTR (NM_018945, exon 1 of 13)	5' UTR (NM_018945, exon 1 of 13)	149	NM_018945	27115		NM_018945	ENSG00000171408	PDE7B	bA472E5.1	phosphodiesterase 7B	protein-coding
226991	chr9	83583201	83583450	+	0	NA	Intergenic	Intergenic	-39724	NM_001256915	414328		NM_001001551	ENSG00000148057	IDNK	C9orf103|bA522I20.2|hGntK	IDNK gluconokinase	protein-coding
118398	chr19	35739221	35739480	+	0	NA	TTS (NM_014727)	TTS (NM_014727)	3102	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
172732	chr4	2822671	2822830	+	0	NA	intron (NM_001145856, intron 2 of 12)	intron (NM_001145856, intron 2 of 12)	3936	NM_003023	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
57777	chr12	122994671	122995230	+	0	NA	exon (NM_020845, exon 15 of 26)	exon (NM_020845, exon 15 of 26)	14890	NM_016638	51329		NM_016638	ENSG00000182196	ARL6IP4	SFRS20|SR-25|SRp25|SRrp37	ADP ribosylation factor like GTPase 6 interacting protein 4	protein-coding
32452	chr10	102634271	102635030	+	0	NA	Intergenic	Intergenic	-9829	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
160154	chr3	20108521	20109000	+	0	NA	intron (NM_003884, intron 5 of 17)	MER1B|DNA|hAT-Charlie	-28805	NR_036086	100422901		NR_036086	ENSG00000266745	MIR3135A	MIR3135|hsa-mir-3135a	microRNA 3135a	ncRNA
117953	chr19	33246151	33246650	+	0	NA	Intergenic	Intergenic	-20550	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
98610	chr17	47755471	47755830	+	0	NA	Intergenic	AluJb|SINE|Alu	22414	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
77464	chr15	84437771	84437930	+	0	NA	intron (NM_001267536, intron 9 of 10)	intron (NM_001267536, intron 9 of 10)	-5596	NR_158192	102724135		NR_158192		LOC102724135	-	uncharacterized LOC102724135	pseudo
200836	chr6	138106201	138106430	+	0	NA	intron (NM_022121, intron 1 of 2)	intron (NM_022121, intron 1 of 2)	1104	NM_022121	64065		NM_022121	ENSG00000112378	PERP	EKVP7|KCP1|KRTCAP1|OLMS2|PIGPC1|THW|dJ496H19.1	p53 apoptosis effector related to PMP22	protein-coding
189633	chr5	176041321	176041580	+	0	NA	Intergenic	Intergenic	20605	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
194582	chr6	33427601	33429000	+	0	NA	intron (NM_006772, intron 3 of 18).2	CpG	8235	NM_006772	8831		NM_006772	ENSG00000197283	SYNGAP1	MRD5|RASA1|RASA5|SYNGAP	synaptic Ras GTPase activating protein 1	protein-coding
35008	chr11	539721	540480	+	0	NA	intron (NM_198075, intron 3 of 13)	intron (NM_198075, intron 3 of 13)	2573	NM_198075	115399		NM_198075	ENSG00000161328	LRRC56	CILD39|DNAAF12|oda8	leucine rich repeat containing 56	protein-coding
273	chr1	930901	931300	+	0	NA	intron (NM_001385641, intron 4 of 13)	intron (NM_001385641, intron 4 of 13)	5369	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
235594	chrX	47587151	47587250	+	0	NA	promoter-TSS (NR_039926)	promoter-TSS (NR_039926)	-229	NR_039926	100616147		NR_039926	ENSG00000263858	MIR4769	-	microRNA 4769	ncRNA
75133	chr15	64583521	64584250	+	0	NA	intron (NM_015042, intron 2 of 9)	HAL1|LINE|L1	119396	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
129840	chr2	72883401	72883730	+	0	NA	Intergenic	Intergenic	-3843	NM_003124	6697		NM_003124	ENSG00000116096	SPR	SDR38C1	sepiapterin reductase	protein-coding
13319	chr1	113755821	113756100	+	0	NA	intron (NM_001323050, intron 3 of 15)	AluY|SINE|Alu	3195	NM_006608	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
129375	chr2	68794651	68795580	+	0	NA	intron (NM_001364819, intron 4 of 10)	L1PB4|LINE|L1	20205	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
156630	chr22	41605221	41605480	+	0	NA	intron (NM_015704, intron 3 of 5)	intron (NM_015704, intron 3 of 5)	-15510	NM_002676	5372		NM_002676	ENSG00000100417	PMM1	PMM 1|PMMH-22|Sec53	phosphomannomutase 1	protein-coding
202798	chr6	159118971	159119330	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-50250	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
89693	chr16	89392401	89392600	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-38418	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
103906	chr17	79811451	79812100	+	0	NA	Intergenic	CpG	-11677	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
118366	chr19	35704751	35704850	+	0	NA	intron (NM_014383, intron 1 of 6)	intron (NM_014383, intron 1 of 6)	242	NM_014383	27033		NM_014383	ENSG00000011590	ZBTB32	FAXF|FAZF|Rog|TZFP|ZNF538|mynn	zinc finger and BTB domain containing 32	protein-coding
30920	chr10	87149051	87149750	+	0	NA	intron (NM_001377167, intron 3 of 10)	intron (NM_001377167, intron 3 of 10)	54194	NM_001377158	54537		NM_019054	ENSG00000122376	SHLD2	FAM35A|FAM35A1|RINN2|bA163M19.1	shieldin complex subunit 2	protein-coding
210301	chr7	99458621	99459500	+	0	NA	intron (NM_001039178, intron 2 of 2)	intron (NM_001039178, intron 2 of 2)	7107	NM_001198879	100526740		NM_001198879	ENSG00000248919	ATP5MF-PTCD1	ATP5J2-PTCD1	ATP5MF-PTCD1 readthrough	protein-coding
146631	chr20	50191201	50191700	+	0	NA	exon (NM_005194, exon 1 of 1)	exon (NM_005194, exon 1 of 1)	619	NR_125739	101927559		NR_125739	ENSG00000277449	CEBPB-AS1	-	CEBPB antisense RNA 1	ncRNA
138131	chr2	202299771	202300230	+	0	NA	intron (NM_015934, intron 12 of 14)	intron (NM_015934, intron 12 of 14)	6949	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
220354	chr8	99655671	99656030	+	0	NA	intron (NM_152564, intron 34 of 61)	intron (NM_152564, intron 34 of 61)	-118989	NR_030596	100126309		NR_030596	ENSG00000216069	MIR875	MIRN875|hsa-mir-875	microRNA 875	ncRNA
79237	chr16	384851	384950	+	0	NA	intron (NR_024453, intron 2 of 2)	AluSx|SINE|Alu	2659	NR_024453	100134368		NR_024453	ENSG00000293232	LOC100134368	-	uncharacterized LOC100134368	ncRNA
69033	chr14	91830751	91831050	+	0	NA	intron (NM_001128596, intron 1 of 11)	L1MEd|LINE|L1	5555	NM_152332	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
50508	chr12	47816701	47817680	+	0	NA	intron (NR_160436, intron 1 of 25)	intron (NR_160436, intron 1 of 25)	2713	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
186885	chr5	139553351	139553450	+	0	NA	Intergenic	Intergenic	-7766	NM_181838	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
127939	chr2	46536471	46536630	+	0	NA	intron (NM_001371283, intron 2 of 3)	intron (NM_001371283, intron 2 of 3)	-5940	NM_012249	23433		NM_012249	ENSG00000119729	RHOQ	ARHQ|HEL-S-42|RASL7A|TC10|TC10A	ras homolog family member Q	protein-coding
210034	chr7	94329151	94329260	+	0	NA	Intergenic	AluYa5|SINE|Alu	62987	NR_147206	101927525		NR_147206		COL1A2-AS1	TCONS_00013888|lncRNA8975-1	COL1A2 antisense RNA 1	ncRNA
203150	chr6	166989401	166990000	+	0	NA	Intergenic	MER34A1|LTR|ERV1	8212	NR_037504	100500857		NR_037504	ENSG00000265828	MIR3939	mir-3939	microRNA 3939	ncRNA
66959	chr14	65926801	65927200	+	0	NA	Intergenic	LTR9B|LTR|ERV1	455898	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
94829	chr17	31393221	31393480	+	0	NA	intron (NM_032932, intron 1 of 14)	intron (NM_032932, intron 1 of 14)	1675	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
231869	chr9	132948851	132949350	+	0	NA	intron (NM_004188, intron 1 of 10)	LTR33|LTR|ERVL	3393	NR_049862	100846992		NR_049862	ENSG00000263816	MIR548AW	-	microRNA 548aw	ncRNA
22500	chr1	221739321	221739850	+	0	NA	exon (NM_007207, exon 2 of 4)	exon (NM_007207, exon 2 of 4)	2504	NM_007207	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
101867	chr17	74217071	74217430	+	0	NA	intron (NM_001330453, intron 1 of 13)	intron (NM_001330453, intron 1 of 13)	1620	NM_001330453	94015		NM_032646	ENSG00000141540	TTYH2	C17orf29	tweety family member 2	protein-coding
103656	chr17	78772411	78773430	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSz|SINE|Alu	9288	NM_001365039	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
70148	chr14	100287601	100288200	+	0	NA	Intergenic	Intergenic	10543	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
167471	chr3	129117971	129118130	+	0	NA	intron (NM_001204890, intron 11 of 12)	L2b|LINE|L2	3754	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
58385	chr12	131833721	131834530	+	0	NA	intron (NM_016155, intron 1 of 9)	intron (NM_016155, intron 1 of 9)	5732	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
132495	chr2	106012151	106012250	+	0	NA	Intergenic	Intergenic	-53488	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
159534	chr3	14440501	14440700	+	0	NA	intron (NM_001134367, intron 2 of 14)	L2|LINE|L2	37994	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
110237	chr19	1774801	1775500	+	0	NA	intron (NM_001080488, intron 1 of 1)	CpG	21644	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
211298	chr7	103281871	103282150	+	0	NA	Intergenic	L1PA5|LINE|L1	-1544	NR_027768	349152		NM_182634	ENSG00000291139	DPY19L2P2	-	DPY19L2 pseudogene 2	pseudo
145219	chr20	38912001	38912200	+	0	NA	intron (NM_001172735, intron 9 of 9)	AluSq2|SINE|Alu	-14317	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
34020	chr10	124708121	124708580	+	0	NA	intron (NR_120630, intron 2 of 2)	intron (NR_120630, intron 2 of 2)	4322	NR_120630	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
227032	chr9	83960051	83960350	+	0	NA	Intergenic	AluY|SINE|Alu	-3214	NM_001317997	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
47337	chr12	1811501	1812050	+	0	NA	intron (NM_172364, intron 26 of 37)	intron (NM_172364, intron 26 of 37)	-8492	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
72754	chr15	39626171	39626530	+	0	NA	intron (NM_001324338, intron 10 of 11)	intron (NM_001324338, intron 10 of 11)	45271	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
36299	chr11	3832471	3833800	+	0	NA	intron (NM_001665, intron 1 of 1)	AluJb|SINE|Alu	7824	NM_001665	391		NM_001665	ENSG00000177105	RHOG	ARHG	ras homolog family member G	protein-coding
205895	chr7	25119271	25120080	+	0	NA	3' UTR (NM_018947, exon 3 of 3)	3' UTR (NM_018947, exon 3 of 3)	5585	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
70841	chr14	103696201	103696900	+	0	NA	intron (NM_001130107, intron 14 of 15)	intron (NM_001130107, intron 14 of 15)	18901	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
37762	chr11	32089921	32090180	+	0	NA	Intergenic	Charlie4z|DNA|hAT-Charlie	-1024	NM_002901	5954		NM_002901	ENSG00000049449	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1	protein-coding
175577	chr4	75654901	75656550	+	0	NA	intron (NM_203505, intron 6 of 11)	intron (NM_203505, intron 6 of 11)	17434	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
46671	chr11	128725071	128726160	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-29592	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
91468	chr17	4869901	4870100	+	0	NA	intron (NM_001321236, intron 2 of 31)	AluY|SINE|Alu	-29536	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
91100	chr17	3658571	3658930	+	0	NA	intron (NM_001374494, intron 9 of 10)	intron (NM_001374494, intron 9 of 10)	9828	NM_014604	30851		NM_014604	ENSG00000213977	TAX1BP3	TIP-1|TIP1	Tax1 binding protein 3	protein-coding
23394	chr1	228209371	228209730	+	0	NA	intron (NM_052843, intron 1 of 80)	intron (NM_052843, intron 1 of 80)	1420	NM_001098623	84033		NM_052843	ENSG00000154358	OBSCN	ARHGEF30|RHABDO1|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding
88266	chr16	82935801	82936200	+	0	NA	intron (NM_001220490, intron 2 of 12)	LTR9|LTR|ERV1	54298	NR_110937	101928417		NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
217352	chr8	27817971	27818330	+	0	NA	intron (NM_001278945, intron 6 of 7)	MLT1I|LTR|ERVL-MaLR	19667	NM_001278945	55872		NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
124555	chr2	441271	442000	+	0	NA	Intergenic	Intergenic	51020	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
233848	chrX	1511421	1512000	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	25475	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
143625	chr20	31747671	31747830	+	0	NA	intron (NM_012112, intron 2 of 17)	intron (NM_012112, intron 2 of 17)	8460	NM_012112	22974		NM_012112	ENSG00000088325	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2 microtubule nucleation factor	protein-coding
59591	chr13	27559671	27560100	+	0	NA	exon (NM_153371, exon 6 of 10)	exon (NM_153371, exon 6 of 10)	60644	NM_153371	222484		NM_153371	ENSG00000139517	LNX2	PDZRN1	ligand of numb-protein X 2	protein-coding
1984	chr1	6612601	6614200	+	0	NA	promoter-TSS (NM_153812)	promoter-TSS (NM_153812)	-331	NM_153812	148479		NM_153812	ENSG00000116273	PHF13	PHF5|SPOC1	PHD finger protein 13	protein-coding
29332	chr10	69407671	69407980	+	0	NA	intron (NM_001057, intron 3 of 4)	intron (NM_001057, intron 3 of 4)	9093	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
47139	chr12	748271	748430	+	0	NA	Intergenic	AluJr|SINE|Alu	-4229	NM_014823	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
5366	chr1	25364771	25365180	+	0	NA	intron (NM_138618, intron 8 of 8)	AluSz|SINE|Alu	26641	NM_014313	23585		NM_014313	ENSG00000183726	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
5481	chr1	25672821	25673080	+	0	NA	intron (NM_020379, intron 1 of 11)	L2b|LINE|L2	-23205	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
38153	chr11	35618671	35619680	+	0	NA	exon (NM_014344, exon 1 of 1)	exon (NM_014344, exon 1 of 1)	715	NM_014344	24147		NM_014344	ENSG00000179431	FJX1	-	four-jointed box kinase 1	protein-coding
102314	chr17	75365471	75366430	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	39728	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
41745	chr11	66679801	66680200	+	0	NA	Intergenic	L1MC5a|LINE|L1	-2113	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
199745	chr6	125792721	125793000	+	0	NA	intron (NM_001199621, intron 1 of 14)	intron (NM_001199621, intron 1 of 14)	1900	NM_001199621	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
73995	chr15	52033601	52034000	+	0	NA	intron (NM_002748, intron 1 of 5)	L1MEf|LINE|L1	14581	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
14371	chr1	144145201	144145600	+	0	NA	Intergenic	(CCTGC)n|Simple_repeat|Simple_repeat	102805	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
185131	chr5	119301121	119301380	+	0	NA	intron (NM_001077654, intron 1 of 1)	L2b|LINE|L2	-31925	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
11346	chr1	89605451	89605550	+	0	NA	Intergenic	Intergenic	27394	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
124632	chr2	1743221	1743880	+	0	NA	intron (NM_012293, intron 1 of 22)	CpG	965	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
230085	chr9	127505571	127506730	+	0	NA	3' UTR (NM_001035534, exon 14 of 14)	3' UTR (NM_001035534, exon 14 of 14)	53895	NM_001005374	90678		NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
18015	chr1	160563901	160564100	+	0	NA	intron (NM_001184882, intron 1 of 5)	MER5A1|DNA|hAT-Charlie	15496	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
213278	chr7	134692051	134692350	+	0	NA	Intergenic	Intergenic	45347	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
14902	chr1	147079801	147081000	+	0	NA	Intergenic	Intergenic	4356	NR_121645	101447996		NR_121645	ENSG00000286172	RNVU1-8	RNU1-145|vU1.8	RNA, variant U1 small nuclear 8	snRNA
232383	chr9	135963901	135964750	+	0	NA	Intergenic	Intergenic	-2952	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
118730	chr19	38262651	38262950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1773	NM_021102	10653		NM_021102	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	serine peptidase inhibitor, Kunitz type 2	protein-coding
73960	chr15	51777001	51777200	+	0	NA	intron (NM_014548, intron 5 of 9)	intron (NM_014548, intron 5 of 9)	25503	NM_014548	29767		NM_014548	ENSG00000128872	TMOD2	N-TMOD|NTMOD	tropomodulin 2	protein-coding
72274	chr15	30801251	30801550	+	0	NA	Intergenic	Intergenic	-16636	NR_072991	390561		NR_072991		HERC2P10	-	HERC2 pseudogene 10	pseudo
207598	chr7	44969801	44970230	+	0	NA	intron (NM_033054, intron 10 of 21)	intron (NM_033054, intron 10 of 21)	9000	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
99336	chr17	49849651	49850050	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-1833	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
214309	chr7	149225351	149225650	+	0	NA	3' UTR (NM_003575, exon 8 of 8)	3' UTR (NM_003575, exon 8 of 8)	-14151	NM_012256	7988		NM_012256	ENSG00000170260	ZNF212	C2H2-150|ZNF182|ZNFC150	zinc finger protein 212	protein-coding
198474	chr6	106187621	106188250	+	0	NA	intron (NR_104402, intron 5 of 5)	intron (NR_104402, intron 5 of 5)	88994	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
155833	chr22	39402001	39402200	+	0	NA	intron (NM_153497, intron 1 of 10)	L2b|LINE|L2	2320	NM_153497	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
59262	chr13	24127351	24127450	+	0	NA	intron (NM_001286792, intron 3 of 14)	LTR33|LTR|ERVL	-33320	NM_153023	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
46869	chr11	133946821	133947800	+	0	NA	intron (NM_001277285, intron 1 of 19)	intron (NM_001277285, intron 1 of 19)	9658	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
9183	chr1	45599301	45600850	+	0	NA	intron (NM_001195193, intron 2 of 12)	intron (NM_001195193, intron 2 of 12)	16034	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
112165	chr19	5650501	5650700	+	0	NA	intron (NM_001320571, intron 6 of 18)	AluSx3|SINE|Alu	27517	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
144393	chr20	35251931	35253330	+	0	NA	intron (NM_006690, intron 3 of 8)	intron (NM_006690, intron 3 of 8)	25492	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
53089	chr12	57741901	57742950	+	0	NA	promoter-TSS (NM_014770)	promoter-TSS (NM_014770)	-264	NM_014770	116986		NM_014770	ENSG00000135439	AGAP2	CENTG1|GGAP2|PIKE	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding
101361	chr17	67209701	67210100	+	0	NA	intron (NM_001330447, intron 5 of 32)	intron (NM_001330447, intron 5 of 32)	-34876	NR_136398	101928021		NR_136398		HELZ-AS1	-	HELZ antisense RNA 1	ncRNA
10002	chr1	55194671	55195030	+	0	NA	intron (NM_015306, intron 1 of 67)	intron (NM_015306, intron 1 of 67)	20514	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
197648	chr6	84229071	84229230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1507	NM_001286206	22832		NM_014895	ENSG00000135315	CEP162	C6orf84|KIAA1009|QN1	centrosomal protein 162	protein-coding
210807	chr7	100871371	100871850	+	0	NA	exon (NM_003302, exon 7 of 9)	exon (NM_003302, exon 7 of 9)	-3493	NM_001128854	51593		NM_015908	ENSG00000087087	SRRT	ARS2|ASR2|serrate	serrate, RNA effector molecule	protein-coding
13117	chr1	111632771	111633230	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-12602	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
181400	chr5	40688081	40688830	+	0	NA	intron (NM_000958, intron 2 of 2)	intron (NM_000958, intron 2 of 2)	8540	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
147018	chr20	53588171	53588800	+	0	NA	intron (NM_006526, intron 1 of 5)	intron (NM_006526, intron 1 of 5)	5354	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
16973	chr1	155954171	155954330	+	0	NA	intron (NM_004723, intron 14 of 21)	AluJr|SINE|Alu	-2914	NR_106796	102465442		NR_106796	ENSG00000277817	MIR6738	hsa-mir-6738	microRNA 6738	ncRNA
134517	chr2	143450671	143451030	+	0	NA	intron (NM_018460, intron 8 of 13)	intron (NM_018460, intron 8 of 13)	321431	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
204519	chr7	4795771	4796550	+	0	NA	TTS (NM_018059)	TTS (NM_018059)	-7521	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
207566	chr7	44911971	44912330	+	0	NA	Intergenic	Intergenic	-26620	NM_033224	5814		NM_033224	ENSG00000146676	PURB	PURBETA	purine rich element binding protein B	protein-coding
202284	chr6	157143121	157144180	+	0	NA	intron (NM_001371656, intron 9 of 20)	MIRb|SINE|MIR	107223	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
210586	chr7	100370051	100370380	+	0	NA	Intergenic	Intergenic	-3272	NM_178273	29992		NM_013439	ENSG00000085514	PILRA	FDF03	paired immunoglobin like type 2 receptor alpha	protein-coding
34365	chr10	132248121	132248380	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	858	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
1252	chr1	2295521	2295780	+	0	NA	intron (NM_003036, intron 1 of 6)	L1MB7|LINE|L1	57011	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
205722	chr7	23476571	23477180	+	0	NA	Intergenic	Intergenic	-6384	NM_006547	10643		NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding
211683	chr7	106542471	106543130	+	0	NA	Intergenic	Intergenic	118358	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
149206	chr21	25298751	25299050	+	0	NA	Intergenic	Intergenic	132801	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
113937	chr19	10743951	10744450	+	0	NA	intron (NM_001005362, intron 1 of 19)	intron (NM_001005362, intron 1 of 19)	25796	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
214003	chr7	143205751	143206450	+	0	NA	intron (NM_001363538, intron 8 of 11)	intron (NM_001363538, intron 8 of 11)	-15937	NM_176882	259286		NM_176882	ENSG00000221937	TAS2R40	GPR60|T2R40|T2R58	taste 2 receptor member 40	protein-coding
75880	chr15	69726801	69727200	+	0	NA	Intergenic	Intergenic	-108234	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
215405	chr7	157570221	157570680	+	0	NA	intron (NM_130842, intron 19 of 21)	intron (NM_130842, intron 19 of 21)	3972	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
144142	chr20	34024801	34025630	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-23904	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
237187	chrX	107718001	107718830	+	0	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	-1353	NM_004089	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
107189	chr18	35619501	35619900	+	0	NA	intron (NM_001384444, intron 1 of 11)	intron (NM_001384444, intron 1 of 11)	27963	NR_039771	100616257		NR_039771	ENSG00000283514	MIR3975	-	microRNA 3975	ncRNA
88480	chr16	85090921	85091880	+	0	NA	3' UTR (NM_001286565, exon 13 of 13)	3' UTR (NM_001286565, exon 13 of 13)	21072	NM_198491	339145		NM_198491	ENSG00000153789	CIBAR2	FAM92B	CBY1 interacting BAR domain containing 2	protein-coding
110169	chr19	1654251	1654550	+	0	NA	Intergenic	Intergenic	-1785	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
225077	chr9	33291851	33292030	+	0	NA	intron (NM_147134, intron 1 of 15)	intron (NM_147134, intron 1 of 15)	1424	NM_147134	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
132213	chr2	102197851	102197950	+	0	NA	intron (NM_003854, intron 4 of 11)	LTR67B|LTR|ERVL	10586	NM_001351446	8808		NM_003854	ENSG00000115598	IL1RL2	IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2	interleukin 1 receptor like 2	protein-coding
34390	chr10	132336651	132337230	+	0	NA	promoter-TSS (NM_001309474)	promoter-TSS (NM_001309474)	-400	NM_001309474	80313		NM_030626	ENSG00000148814	LRRC27	-	leucine rich repeat containing 27	protein-coding
183459	chr5	79239471	79239780	+	0	NA	intron (NM_152405, intron 1 of 10)	AluY|SINE|Alu	3494	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
76942	chr15	78083971	78084130	+	0	NA	Intergenic	MIRb|SINE|MIR	-6339	NM_015079	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
198102	chr6	90291221	90292080	+	0	NA	intron (NM_021813, intron 1 of 8)	intron (NM_021813, intron 1 of 8)	5193	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
23024	chr1	226404451	226404930	+	0	NA	intron (NM_001618, intron 1 of 22)	intron (NM_001618, intron 1 of 22)	3403	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
57257	chr12	121579901	121580720	+	0	NA	promoter-TSS (NM_001005366)	promoter-TSS (NM_001005366)	-64	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
177532	chr4	118684871	118685830	+	0	NA	promoter-TSS (NR_125930)	promoter-TSS (NR_125930)	-9	NR_125930	101929741		NR_125930	ENSG00000281731	METTL14-DT	-	METTL14 divergent transcript	ncRNA
218613	chr8	56070071	56070230	+	0	NA	intron (NM_001146227, intron 4 of 5)	intron (NM_001146227, intron 4 of 5)	3751	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
132982	chr2	111494401	111496080	+	0	NA	promoter-TSS (NR_015395)	promoter-TSS (NR_015395)	-79	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
144099	chr20	33810671	33813530	+	0	NA	intron (NM_176812, intron 1 of 4)	intron (NM_176812, intron 1 of 4)	752	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
196275	chr6	42973871	42974430	+	0	NA	intron (NM_000287, intron 2 of 16)	intron (NM_000287, intron 2 of 16)	5031	NM_001316313	5190		NM_000287	ENSG00000124587	PEX6	HMLR2|PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
197960	chr6	89970671	89971050	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	76391	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
125274	chr2	10450671	10451030	+	0	NA	intron (NR_110597, intron 2 of 4)	AluSz|SINE|Alu	1122	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
211784	chr7	107582151	107582250	+	0	NA	intron (NR_163934, intron 2 of 8)	intron (NR_163934, intron 2 of 8)	1954	NR_163927	55973		NM_018844	ENSG00000075790	BCAP29	B29|BAP29	B cell receptor associated protein 29	protein-coding
85766	chr16	56898751	56899450	+	0	NA	intron (NM_001126107, intron 22 of 25)	L2a|LINE|L2	-5164	NR_106923	102466752		NR_106923	ENSG00000283471	MIR6863	hsa-mir-6863	microRNA 6863	ncRNA
202330	chr6	157385501	157385750	+	0	NA	intron (NM_024630, intron 1 of 8)	intron (NM_024630, intron 1 of 8)	4435	NM_024630	79683		NM_024630	ENSG00000175048	ZDHHC14	NEW1CP	zinc finger DHHC-type palmitoyltransferase 14	protein-coding
99907	chr17	56911001	56911200	+	0	NA	intron (NM_005082, intron 1 of 8)	AluJr4|SINE|Alu	2949	NM_005082	7706		NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
94595	chr17	29726571	29727500	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	34397	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
39277	chr11	58498151	58499050	+	0	NA	Intergenic	Intergenic	9700	NM_001005218	219968		NM_001005218	ENSG00000198283	OR5B21	-	olfactory receptor family 5 subfamily B member 21	protein-coding
100206	chr17	59153551	59153850	+	0	NA	intron (NM_001330399, intron 1 of 3)	intron (NM_001330399, intron 1 of 3)	1486	NM_001330399	348235		NM_182620	ENSG00000182628	SKA2	FAM33A	spindle and kinetochore associated complex subunit 2	protein-coding
112504	chr19	6468371	6468530	+	0	NA	intron (NM_024898, intron 21 of 22)	intron (NM_024898, intron 21 of 22)	4179	NM_174881	92359		NM_139161	ENSG00000130545	CRB3	-	crumbs cell polarity complex component 3	protein-coding
108552	chr18	74622121	74622680	+	0	NA	intron (NM_001384475, intron 1 of 8)	intron (NM_001384475, intron 1 of 8)	-8563	NM_001146189	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
122551	chr19	49652821	49653080	+	0	NA	exon (NM_021228, exon 7 of 11)	exon (NM_021228, exon 7 of 11)	10741	NM_021228	58506		NM_021228	ENSG00000126461	SCAF1	SRA1	SR-related CTD associated factor 1	protein-coding
5155	chr1	24917001	24917430	+	0	NA	intron (NM_001031680, intron 4 of 5)	intron (NM_001031680, intron 4 of 5)	2201	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
222262	chr8	133282821	133284050	+	0	NA	intron (NM_001374847, intron 1 of 14)	MIRc|SINE|MIR	13255	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
134760	chr2	146392821	146392950	+	0	NA	Intergenic	Intergenic	-194172	NR_026904	728773		NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
208261	chr7	65748801	65749000	+	0	NA	intron (NR_038378, intron 2 of 7)	AluSz|SINE|Alu	2024	NR_103527	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
82832	chr16	21497821	21498100	+	0	NA	intron (NR_027155, intron 1 of 28)	intron (NR_027155, intron 1 of 28)	-3566	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
83352	chr16	25052751	25052850	+	0	NA	Intergenic	AluJr4|SINE|Alu	-14087	NR_135196	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
134491	chr2	143282221	143283080	+	0	NA	intron (NM_018460, intron 6 of 13)	THE1B|LTR|ERVL-MaLR	153231	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
63735	chr14	21219671	21219830	+	0	NA	intron (NM_001077443, intron 4 of 7)	L2a|LINE|L2	-12850	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
218714	chr8	58650751	58651550	+	0	NA	intron (NM_003580, intron 1 of 30)	L3|LINE|CR1	8257	NM_001144772	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
102087	chr17	74967721	74968250	+	0	NA	intron (NM_030630, intron 1 of 18)	AluJo|SINE|Alu	-2704	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
232089	chr9	133609101	133609650	+	0	NA	promoter-TSS (NM_001080515)	promoter-TSS (NM_001080515)	14	NM_001080515	642968		NM_001080515	ENSG00000196990	FAM163B	C9orf166	family with sequence similarity 163 member B	protein-coding
17550	chr1	156801221	156801980	+	0	NA	TTS (NM_005973)	TTS (NM_005973)	-14150	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
98041	chr17	45432531	45434080	+	0	NA	promoter-TSS (NM_001282290)	promoter-TSS (NM_001282290)	-435	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
94560	chr17	29614881	29616500	+	0	NA	TTS (NM_152345)	TTS (NM_152345)	2427	NM_001351302	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
78929	chr15	101248371	101249050	+	0	NA	intron (NM_014918, intron 1 of 2)	intron (NM_014918, intron 1 of 2)	3338	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
159086	chr3	12288701	12288900	+	0	NA	promoter-TSS (NM_138711)	promoter-TSS (NM_138711)	-260	NM_001354667	5468		NM_005037	ENSG00000132170	PPARG	CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARG5|PPARgamma	peroxisome proliferator activated receptor gamma	protein-coding
3269	chr1	15153251	15153750	+	0	NA	promoter-TSS (NM_001136218)	intron (NM_001136216, intron 1 of 3)	-247	NM_001136218	55092		NM_018022	ENSG00000171729	TMEM51	C1orf72	transmembrane protein 51	protein-coding
92885	chr17	16434271	16434430	+	0	NA	intron (NM_016113, intron 13 of 14)	AluY|SINE|Alu	-4637	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
35173	chr11	776421	778170	+	0	NA	promoter-TSS (NR_126342)	promoter-TSS (NR_126342)	192	NR_134868	347862		NM_182612	ENSG00000177225	GATD1	FERRY5|Fy-5|PDDC1	glutamine amidotransferase class 1 domain containing 1	protein-coding
24496	chr1	244435671	244435830	+	0	NA	intron (NM_001365073, intron 3 of 12)	Tigger4|DNA|TcMar-Tigger	16159	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
16600	chr1	155057971	155058130	+	0	NA	exon (NM_207197, exon 14 of 23)	exon (NM_207197, exon 14 of 23)	-5690	NM_182689	1945		NM_005227	ENSG00000243364	EFNA4	EFL4|EPLG4|LERK-4|LERK4	ephrin A4	protein-coding
238560	chrX	153799051	153799150	+	0	NA	TTS (NM_006280)	TTS (NM_006280)	4432	NM_006280	6748		NM_006280	ENSG00000180879	SSR4	CDG1Y|TRAPD	signal sequence receptor subunit 4	protein-coding
223360	chr8	143871851	143872150	+	0	NA	exon (NM_031308, exon 2 of 2)	exon (NM_031308, exon 2 of 2)	6467	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
204752	chr7	5589351	5590550	+	0	NA	Intergenic	Intergenic	-2866	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
231619	chr9	131575971	131576550	+	0	NA	TTS (NM_001377937)	TTS (NM_001377937)	30737	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
101617	chr17	68199001	68200190	+	0	NA	non-coding (NR_027283, exon 1 of 1)	non-coding (NR_027283, exon 1 of 1)	935	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
76812	chr15	77059821	77060080	+	0	NA	intron (NM_005724, intron 1 of 6)	intron (NM_005724, intron 1 of 6)	11159	NM_005724	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
80740	chr16	3138551	3138650	+	0	NA	intron (NR_104432, intron 3 of 5)	intron (NR_104432, intron 3 of 5)	3571	NM_004220	7760		NM_004220	ENSG00000085644	ZNF213	CR53|ZKSCAN21|ZSCAN53	zinc finger protein 213	protein-coding
9310	chr1	46522271	46522730	+	0	NA	Intergenic	Intergenic	13015	NM_001357063	105378696		NM_001357063	ENSG00000282881	TMEM275	-	transmembrane protein 275	protein-coding
146566	chr20	50049471	50050000	+	0	NA	Intergenic	Intergenic	-8106	NR_051976	100887755		NR_051976		TRERNA1	LINC00651|treRNA	translation regulatory long non-coding RNA 1	ncRNA
199402	chr6	116467421	116467680	+	0	NA	Intergenic	Intergenic	6175	NM_001010919	441168		NM_001010919	ENSG00000188820	CALHM6	C6orf187|FAM26F|INAM|dJ93H18.5	calcium homeostasis modulator family member 6	protein-coding
25954	chr10	11533351	11533850	+	0	NA	intron (NM_014688, intron 2 of 14)	MLT1D|LTR|ERVL-MaLR	-1320	NM_001080491	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
37996	chr11	35048971	35049130	+	0	NA	Intergenic	THE1A-int|LTR|ERVL-MaLR	88982	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
203232	chr6	168877501	168878300	+	0	NA	Intergenic	Intergenic	86482	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
200164	chr6	130525301	130525600	+	0	NA	Intergenic	Intergenic	88333	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
68874	chr14	91319301	91319700	+	0	NA	intron (NM_001080414, intron 13 of 29)	intron (NM_001080414, intron 13 of 29)	-65620	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
98530	chr17	47652171	47652580	+	0	NA	intron (NM_001276453, intron 1 of 20)	intron (NM_001276453, intron 1 of 20)	1310	NM_001276453	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
217184	chr8	26314151	26314880	+	0	NA	intron (NM_002717, intron 2 of 9)	HAL1|LINE|L1	21299	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
238689	chrX	154063121	154063780	+	0	NA	intron (NM_001316337, intron 2 of 4)	intron (NM_001316337, intron 2 of 4)	33519	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
28627	chr10	58435501	58435700	+	0	NA	Intergenic	Intergenic	50190	NM_003201	7019		NM_003201	ENSG00000108064	TFAM	MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	transcription factor A, mitochondrial	protein-coding
197254	chr6	70369021	70369730	+	0	NA	Intergenic	Intergenic	-24827	NR_125857	101928353		NR_125857		LINC01610	EVADR	long intergenic non-protein coding RNA 1610	ncRNA
133934	chr2	130451421	130451680	+	0	NA	Intergenic	Intergenic	-9869	NR_103761	646802		NR_103761	ENSG00000290599	CYP4F62P	CYP4F43P	cytochrome P450 family 4 subfamily F member 62, pseudogene	pseudo
108687	chr18	77023271	77023430	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-6295	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
173266	chr4	7048871	7049030	+	0	NA	intron (NM_152293, intron 1 of 1)	L1MB3|LINE|L1	-2719	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
35713	chr11	1938871	1940400	+	0	NA	TTS (NM_001367849)	TTS (NM_001367849)	-7697	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
186468	chr5	138024021	138024280	+	0	NA	intron (NM_016603, intron 1 of 22)	MLT1C|LTR|ERVL-MaLR	-8624	NR_037900	100130172		NR_037900		FAM13B-AS1	-	FAM13B antisense RNA 1	ncRNA
90579	chr17	1559521	1559980	+	0	NA	intron (NM_006224, intron 1 of 11)	intron (NM_006224, intron 1 of 11)	3042	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
22229	chr1	212595721	212597080	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	-12361	NM_001674	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
48584	chr12	10305501	10306680	+	0	NA	promoter-TSS (NM_001351062)	promoter-TSS (NM_001351062)	-70	NM_001351062	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
112289	chr19	5831721	5831980	+	0	NA	exon (NM_001381959, exon 3 of 4)	exon (NM_001381959, exon 3 of 4)	6942	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
162756	chr3	49059051	49059950	+	0	NA	intron (NM_001320580, intron 3 of 10)	AluSc|SINE|Alu	-30102	NM_000884	3615		NM_000884	ENSG00000178035	IMPDH2	IMPD2|IMPDH-II	inosine monophosphate dehydrogenase 2	protein-coding
154594	chr22	36283471	36285300	+	0	NA	intron (NM_002473, intron 39 of 40)	intron (NM_002473, intron 39 of 40)	2522	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
114514	chr19	12795961	12797230	+	0	NA	TTS (NM_005809)	TTS (NM_005809)	5109	NM_002229	3726		NM_002229	ENSG00000171223	JUNB	AP-1	JunB proto-oncogene, AP-1 transcription factor subunit	protein-coding
66453	chr14	61545971	61546130	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	24144	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
134203	chr2	134576571	134576750	+	0	NA	intron (NM_030923, intron 2 of 7)	intron (NM_030923, intron 2 of 7)	142340	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
220182	chr8	95212971	95213900	+	0	NA	intron (NR_046232, intron 1 of 2)	MLT1D|LTR|ERVL-MaLR	2939	NR_046232	619344		NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
94492	chr17	29287801	29288300	+	0	NA	intron (NM_020772, intron 1 of 3)	AluY|SINE|Alu	6098	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
55870	chr12	109463221	109463680	+	0	NA	intron (NR_133898, intron 1 of 5)	intron (NR_133898, intron 1 of 5)	13850	NR_133897	83892		NM_031954	ENSG00000110906	KCTD10	BTBD28|MSTP028|ULRO61|hBACURD3	potassium channel tetramerization domain containing 10	protein-coding
57319	chr12	121678351	121679680	+	0	NA	Intergenic	Intergenic	-6371	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
88281	chr16	83898471	83899830	+	0	NA	promoter-TSS (NM_012213)	promoter-TSS (NM_012213)	35	NM_012213	23417		NM_012213	ENSG00000103150	MLYCD	MCD	malonyl-CoA decarboxylase	protein-coding
67256	chr14	69056401	69056600	+	0	NA	intron (NM_001284206, intron 8 of 8)	intron (NM_001284206, intron 8 of 8)	76818	NR_073422	161159		NR_073422	ENSG00000259062	ACTN1-DT	ACTN1-AS1|C14orf84	ACTN1 divergent transcript	ncRNA
176120	chr4	83083771	83084530	+	0	NA	Intergenic	L1M1|LINE|L1	25739	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
108719	chr18	77083751	77084680	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	48568	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
238717	chrX	154136521	154137330	+	0	NA	Intergenic	CpG	-7318	NM_020061	5956		NM_020061	ENSG00000102076	OPN1LW	CBBM|CBP|COD5|RCP|ROP	opsin 1, long wave sensitive	protein-coding
38335	chr11	44551101	44551300	+	0	NA	Intergenic	MER2B|DNA|TcMar-Tigger	-14463	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
72122	chr15	28956721	28957280	+	0	NA	intron (NM_001353793, intron 1 of 12).2	L1MB3|LINE|L1	22996	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
158975	chr3	10254901	10255530	+	0	NA	intron (NM_014760, intron 2 of 7)	AluJb|SINE|Alu	6756	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
202509	chr6	158536901	158538030	+	0	NA	intron (NM_001376856, intron 1 of 13)	CpG	825	NM_001376817	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
11004	chr1	84668201	84668500	+	0	NA	intron (NM_001166295, intron 3 of 12)	intron (NM_001166295, intron 3 of 12)	22111	NM_001166294	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
56998	chr12	120573851	120574150	+	0	NA	intron (NM_001330474, intron 14 of 16)	MSTB1|LTR|ERVL-MaLR	7398	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
132507	chr2	106085121	106086250	+	0	NA	Intergenic	Intergenic	19997	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
41827	chr11	67056401	67057250	+	0	NA	promoter-TSS (NM_001300886)	promoter-TSS (NM_001300886)	-22	NM_001300886	29984		NM_014578	ENSG00000173156	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
210315	chr7	99475371	99475530	+	0	NA	intron (NM_001350999, intron 1 of 3)	intron (NM_001350999, intron 1 of 3)	2558	NM_001351000	285989		NM_213603	ENSG00000198556	ZNF789	-	zinc finger protein 789	protein-coding
71526	chr14	106166301	106166800	+	0	NA	Intergenic	Intergenic	-121124	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
101789	chr17	73209801	73210000	+	0	NA	intron (NM_001289410, intron 1 of 1)	MIRc|SINE|MIR	16845	NM_018714	9382		NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
231787	chr9	132321471	132321830	+	0	NA	intron (NM_001351527, intron 10 of 25)	AluY|SINE|Alu	33206	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
212013	chr7	114916271	114917330	+	0	NA	Intergenic	L2b|LINE|L2	-5354	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
125341	chr2	10828301	10828500	+	0	NA	intron (NM_001282704, intron 1 of 14)	intron (NM_001282704, intron 1 of 14)	4085	NM_001282706	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
139368	chr2	221527521	221528380	+	0	NA	intron (NM_004438, intron 3 of 17)	intron (NM_004438, intron 3 of 17)	44354	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
74640	chr15	60819671	60820030	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	138281	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
129918	chr2	73291151	73292100	+	0	NA	exon (NM_001965, exon 2 of 2)	exon (NM_001965, exon 2 of 2)	1923	NM_001965	1961		NM_001965	ENSG00000135625	EGR4	AT133|NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
12981	chr1	110901351	110901450	+	0	NA	Intergenic	AluSq|SINE|Alu	28252	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
177911	chr4	129623251	129623550	+	0	NA	Intergenic	Intergenic	148078	NR_110753	101927282		NR_110753	ENSG00000246876	LINC02466	-	long intergenic non-protein coding RNA 2466	ncRNA
184693	chr5	108750551	108750880	+	0	NA	intron (NR_146155, intron 1 of 19)	intron (NR_146155, intron 1 of 19)	1767	NM_001308028	2241		NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding
229070	chr9	114353321	114353850	+	0	NA	intron (NM_001317952, intron 13 of 20)	Tigger3b|DNA|TcMar-Tigger	23716	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
93183	chr17	17803671	17803830	+	0	NA	intron (NM_030665, intron 3 of 5)	intron (NM_030665, intron 3 of 5)	9795	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
215742	chr8	1823501	1824400	+	0	NA	promoter-TSS (NM_001308153)	promoter-TSS (NM_001308153)	24	NM_001308153	9639		NM_014629	ENSG00000104728	ARHGEF10	GEF10|SNCV	Rho guanine nucleotide exchange factor 10	protein-coding
160382	chr3	27930401	27930600	+	0	NA	Intergenic	Intergenic	-96364	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
46209	chr11	123580521	123581000	+	0	NA	intron (NM_001286563, intron 3 of 20)	intron (NM_001286563, intron 3 of 20)	20498	NM_001286564	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
186837	chr5	139437201	139437830	+	0	NA	exon (NM_152686, exon 2 of 8)	exon (NM_152686, exon 2 of 8)	2010	NM_152686	202052		NM_152686	ENSG00000170464	DNAJC18	-	DnaJ heat shock protein family (Hsp40) member C18	protein-coding
59802	chr13	30373101	30374000	+	0	NA	intron (NR_024464, intron 1 of 4)	intron (NR_024464, intron 1 of 4)	364	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
132886	chr2	111256601	111256800	+	0	NA	intron (NR_136161, intron 3 of 5)	L1ME1|LINE|L1	64386	NR_039636	100616341		NR_039636	ENSG00000266139	MIR4435-2	mir-4435-2	microRNA 4435-2	ncRNA
58850	chr12	132906951	132907530	+	0	NA	Intergenic	Intergenic	19398	NR_110919	101928530		NR_110919	ENSG00000236617	CHFR-DT	-	CHFR divergent transcript	ncRNA
166226	chr3	112116021	112116350	+	0	NA	intron (NM_024616, intron 5 of 5)	intron (NM_024616, intron 5 of 5)	3384	NR_030292	693152		NR_030292	ENSG00000207940	MIR567	MIRN567|hsa-mir-567	microRNA 567	ncRNA
9709	chr1	53108151	53108250	+	0	NA	3' UTR (NM_001287596, exon 4 of 4)	3' UTR (NM_001287596, exon 4 of 4)	34438	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
212319	chr7	127322201	127323000	+	0	NA	Intergenic	Intergenic	-69659	NM_001371083	2918		NM_000845	ENSG00000179603	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	glutamate metabotropic receptor 8	protein-coding
13777	chr1	117128251	117128880	+	0	NA	Intergenic	L2c|LINE|L2	-6816	NM_025188	80263		NM_025188	ENSG00000134253	TRIM45	RNF99	tripartite motif containing 45	protein-coding
200505	chr6	135586871	135587030	+	0	NA	intron (NR_152845, intron 2 of 4)	intron (NR_152845, intron 2 of 4)	89149	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
5494	chr1	25711471	25712230	+	0	NA	intron (NM_001385185, intron 1 of 10)	intron (NM_001385185, intron 1 of 10)	15695	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
19497	chr1	175153671	175154050	+	0	NA	Intergenic	Intergenic	38916	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
139396	chr2	222305471	222305630	+	0	NA	TTS (NR_161172)	TTS (NR_161172)	-6552	NM_000438	5077		NM_000438	ENSG00000135903	PAX3	CDHS|HUP2|PAX-3|WS1|WS3	paired box 3	protein-coding
194878	chr6	34659471	34659630	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-36604	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
73079	chr15	40928451	40928600	+	0	NA	promoter-TSS (NM_019074)	promoter-TSS (NM_019074)	-815	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
111	chr1	486971	487530	+	0	NA	Intergenic	Intergenic	8195	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
1991	chr1	6646371	6646950	+	0	NA	intron (NM_018198, intron 7 of 15)	intron (NM_018198, intron 7 of 15)	21510	NM_001195752	90326		NM_138350	ENSG00000041988	THAP3	-	THAP domain containing 3	protein-coding
83506	chr16	27442021	27442280	+	0	NA	intron (NM_181078, intron 4 of 8)	(TG)n|Simple_repeat|Simple_repeat	11243	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
87704	chr16	74888271	74888780	+	0	NA	intron (NM_030581, intron 21 of 25)	intron (NM_030581, intron 21 of 25)	96598	NM_030581	79726		NM_030581	ENSG00000103091	WDR59	CDW12|FP977|p90-120	WD repeat domain 59	protein-coding
205486	chr7	17843101	17843600	+	0	NA	intron (NM_015132, intron 12 of 25)	L1M4c|LINE|L1	97144	NM_001350864	23161		NM_015132	ENSG00000071189	SNX13	RGS-PX1	sorting nexin 13	protein-coding
3554	chr1	16152971	16153130	+	0	NA	intron (NM_004431, intron 1 of 16)	intron (NM_004431, intron 1 of 16)	3019	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
146598	chr20	50120671	50121630	+	0	NA	3' UTR (NM_001162505, exon 6 of 6)	3' UTR (NM_001162505, exon 6 of 6)	-5193	NM_022442	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
230804	chr9	129019901	129020100	+	0	NA	intron (NR_163192, intron 1 of 10)	AluSx1|SINE|Alu	8331	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
12792	chr1	109787971	109788600	+	0	NA	Intergenic	Intergenic	-24362	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
179821	chr5	462251	462750	+	0	NA	intron (NM_007277, intron 9 of 12)	intron (NM_007277, intron 9 of 12)	10465	NR_024158	25845		NM_015389	ENSG00000188242	SLC9A3-OT1	PP7080	SLC9A3 3' UTR overlapping transcript 1	ncRNA
127828	chr2	44951401	44951600	+	0	NA	Intergenic	Intergenic	-9622	NR_103786	100506108		NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA
113492	chr19	10083171	10083530	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-2967	NM_018381	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
153412	chr22	24851221	24851480	+	0	NA	intron (NM_133454, intron 5 of 24)	intron (NM_133454, intron 5 of 24)	45129	NM_133454	129049		NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding
184794	chr5	111214171	111214330	+	0	NA	Intergenic	L1MCc|LINE|L1	-9333	NM_001323375	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
165991	chr3	108096451	108097230	+	0	NA	Intergenic	Intergenic	-5809	NM_001777	961		NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding
7234	chr1	32334721	32335700	+	0	NA	intron (NR_052852, intron 1 of 1)	intron (NR_052852, intron 1 of 1)	1023	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
163160	chr3	50162821	50163480	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	4131	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
93728	chr17	19579671	19580150	+	0	NA	TTS (NM_018242)	TTS (NM_018242)	22350	NR_003025	677885		NR_003025	ENSG00000239149	SNORA59A	ACA59	small nucleolar RNA, H/ACA box 59A	snoRNA
173298	chr4	7104471	7104630	+	0	NA	Intergenic	Intergenic	-1174	NR_027441	730971		NR_027441		LINC02447	-	long intergenic non-protein coding RNA 2447	ncRNA
186496	chr5	138274121	138274650	+	0	NA	exon (NM_001496, exon 1 of 8)	exon (NM_001496, exon 1 of 8)	236	NM_001496	2676		NM_001496	ENSG00000146013	GFRA3	GDNFR3	GDNF family receptor alpha 3	protein-coding
104031	chr17	80126921	80127180	+	0	NA	Intergenic	AluJr|SINE|Alu	20078	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
214530	chr7	150512171	150512430	+	0	NA	Intergenic	Intergenic	-2572	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
5004	chr1	24413121	24414200	+	0	NA	5' UTR (NM_001322854, exon 1 of 12)	5' UTR (NM_001322854, exon 1 of 12)	112	NM_178122	90529		NM_178122	ENSG00000001460	STPG1	C1orf201|MAPO2	sperm tail PG-rich repeat containing 1	protein-coding
199174	chr6	111753121	111755230	+	0	NA	intron (NM_002037, intron 3 of 13)	LTR84b|LTR|ERVL	4956	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
52284	chr12	54581971	54582330	+	0	NA	intron (NM_006741, intron 4 of 6)	intron (NM_006741, intron 4 of 6)	6509	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
183325	chr5	76718351	76718930	+	0	NA	intron (NM_001992, intron 1 of 1)	intron (NM_001992, intron 1 of 1)	2514	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
106970	chr18	31940371	31940730	+	0	NA	intron (NM_014939, intron 1 of 28)	(TTG)n|Simple_repeat|Simple_repeat	2578	NM_014939	22878		NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex subunit 8	protein-coding
110285	chr19	1824921	1825350	+	0	NA	TTS (NR_152847)	TTS (NR_152847)	3046	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
170612	chr3	187000821	187001680	+	0	NA	intron (NM_173216, intron 2 of 7)	intron (NM_173216, intron 2 of 7)	-20605	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
65854	chr14	55050071	55050230	+	0	NA	TTS (NM_080867)	TTS (NM_080867)	-1497	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
122476	chr19	49551471	49551950	+	0	NA	Intergenic	L1ME1|LINE|L1	23707	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
133078	chr2	112432621	112434350	+	0	NA	5' UTR (NM_001164463, exon 1 of 23).2	5' UTR (NM_001164463, exon 1 of 23).2	129	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
107265	chr18	42030671	42030850	+	0	NA	intron (NM_002647, intron 15 of 24)	Helitron3Na_Mam|RC|Helitron	75526	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
104304	chr17	80891381	80892600	+	0	NA	intron (NM_020761, intron 18 of 33)	intron (NM_020761, intron 18 of 33)	79223	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
206018	chr7	26334571	26334930	+	0	NA	intron (NM_001318199, intron 1 of 6)	intron (NM_001318199, intron 1 of 6)	-26134	NM_001199837	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
45098	chr11	117088771	117089750	+	0	NA	intron (NM_001281748, intron 1 of 24)	AluY|SINE|Alu	9168	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
233910	chrX	1623121	1623780	+	0	NA	intron (NM_001171039, intron 2 of 6).2	AluY|SINE|Alu	8317	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
28974	chr10	63250621	63251530	+	0	NA	intron (NM_001322252, intron 2 of 24)	intron (NM_001322252, intron 2 of 24)	18148	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
179243	chr4	174294521	174295030	+	0	NA	intron (NM_001145314, intron 1 of 10)	SVA_D|Retroposon|SVA	10864	NM_001040157	80817		NM_030633	ENSG00000164118	CEP44	KIAA1712|PS1TP3	centrosomal protein 44	protein-coding
78423	chr15	92506601	92506800	+	0	NA	Intergenic	L1MEd|LINE|L1	35023	NR_161371	145858		NM_153040	ENSG00000183643	C15orf32	-	chromosome 15 putative open reading frame 32	ncRNA
169729	chr3	172288671	172288980	+	0	NA	intron (NM_022763, intron 7 of 25)	intron (NM_022763, intron 7 of 25)	159631	NM_004122	2693		NM_004122	ENSG00000121853	GHSR	GHDP|GHS-R1a|GHSR-1a	growth hormone secretagogue receptor	protein-coding
131098	chr2	89832221	89832500	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-194453	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
100039	chr17	58004971	58005130	+	0	NA	non-coding (NR_034041, exon 3 of 4)	non-coding (NR_034041, exon 3 of 4)	2196	NM_001078166	6426		NM_006924	ENSG00000136450	SRSF1	ASF|NEDFBA|SF2|SF2p33|SFRS1|SRp30a	serine and arginine rich splicing factor 1	protein-coding
218863	chr8	60516421	60518030	+	0	NA	exon (NM_001242644, exon 1 of 7)	exon (NM_001242644, exon 1 of 7)	238	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
42683	chr11	72600601	72600800	+	0	NA	intron (NM_001243784, intron 4 of 30)	intron (NM_001243784, intron 4 of 30)	14430	NR_029603	406931		NR_029603	ENSG00000272036	MIR139	MIR139-3p|MIRN139|mir-139	microRNA 139	ncRNA
75406	chr15	65765771	65765930	+	0	NA	intron (NM_001376919, intron 1 of 31)	L1MD2|LINE|L1	26443	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
230037	chr9	127361551	127361850	+	0	NA	intron (NR_104591, intron 21 of 26)	intron (NR_104591, intron 21 of 26)	-35438	NM_001271711	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
163019	chr3	49795771	49795930	+	0	NA	intron (NM_001007540, intron 6 of 18)	intron (NM_001007540, intron 6 of 18)	4023	NM_001007540	389118		NM_001007540	ENSG00000187492	CDHR4	CDH29|PRO34300	cadherin related family member 4	protein-coding
84236	chr16	29992971	29993480	+	0	NA	TTS (NM_004783)	TTS (NM_004783)	2392	NM_003609	8479		NM_003609	ENSG00000149929	HIRIP3	-	HIRA interacting protein 3	protein-coding
74011	chr15	52163271	52163980	+	0	NA	intron (NM_016194, intron 3 of 12)	L1PA11|LINE|L1	16066	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
223113	chr8	143465071	143465600	+	0	NA	intron (NM_015117, intron 9 of 11)	intron (NM_015117, intron 9 of 11)	-34603	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
204880	chr7	5995671	5995830	+	0	NA	intron (NR_136154, intron 7 of 14)	intron (NR_136154, intron 7 of 14)	13299	NM_001322012	5395		NM_000535	ENSG00000122512	PMS2	HNPCC4|LYNCH4|MLH4|MMRCS4|PMS-2|PMS2CL|PMSL2	PMS1 homolog 2, mismatch repair system component	protein-coding
171278	chr3	195891771	195892280	+	0	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	719	NM_001382275	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
139431	chr2	222903471	222903980	+	0	NA	intron (NM_001354158, intron 2 of 15)	intron (NM_001354158, intron 2 of 15)	42689	NM_001354158	2181		NM_004457	ENSG00000123983	ACSL3	ACS3|FACL3|LACS 3|LACS3|PRO2194	acyl-CoA synthetase long chain family member 3	protein-coding
78375	chr15	91522701	91523050	+	0	NA	Intergenic	Tigger16a|DNA|TcMar-Tigger	59536	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
166077	chr3	108861271	108861830	+	0	NA	Intergenic	LTR86B2|LTR|ERVL	38764	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
45964	chr11	121451251	121452600	+	0	NA	promoter-TSS (NM_003105)	promoter-TSS (NM_003105)	-389	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
50192	chr12	46181371	46181780	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	84941	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
179327	chr4	182478451	182478650	+	0	NA	intron (NM_001080477, intron 3 of 27)	intron (NM_001080477, intron 3 of 27)	235148	NM_001080477	55714		NM_001080477	ENSG00000218336	TENM3	MCOPCB9|MCOPS15|ODZ3|TEN3|TNM3|Ten-m3|ten-3	teneurin transmembrane protein 3	protein-coding
38213	chr11	36400901	36401380	+	0	NA	exon (NM_024841, exon 3 of 10)	exon (NM_024841, exon 3 of 10)	143	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
27146	chr10	28329471	28329630	+	0	NA	Intergenic	AluY|SINE|Alu	-26486	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
153741	chr22	29312051	29312680	+	0	NA	TTS (NM_006477)	TTS (NM_006477)	3332	NM_006477	10633		NM_006477	ENSG00000100276	RASL10A	RRP22	RAS like family 10 member A	protein-coding
143740	chr20	32359701	32360630	+	0	NA	intron (NM_001363734, intron 1 of 10)	intron (NM_001363734, intron 1 of 10)	1100	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
228755	chr9	110156671	110157780	+	0	NA	intron (NM_147150, intron 9 of 9)	intron (NM_147150, intron 9 of 9)	31724	NM_001136562	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
130380	chr2	85306151	85306250	+	0	NA	intron (NM_031283, intron 8 of 11)	intron (NM_031283, intron 8 of 11)	21789	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
53550	chr12	67484751	67485230	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-35092	NR_103861	100507175		NR_103861	ENSG00000203585	LINC02408	-	long intergenic non-protein coding RNA 2408	ncRNA
207631	chr7	45026671	45029350	+	0	NA	intron (NM_001029835, intron 1 of 9)	intron (NM_001029835, intron 1 of 9)	376	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
2662	chr1	10494571	10495980	+	0	NA	exon (NM_004565, exon 2 of 9)	exon (NM_004565, exon 2 of 9)	20325	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
222424	chr8	134683171	134683730	+	0	NA	intron (NM_001289394, intron 1 of 16)	intron (NM_001289394, intron 1 of 16)	13105	NM_001029939	57623		NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding
88806	chr16	87397171	87398230	+	0	NA	intron (NM_022818, intron 1 of 3)	intron (NM_022818, intron 1 of 3)	5364	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
85992	chr16	57452751	57452850	+	0	NA	intron (NM_020312, intron 2 of 8)	intron (NM_020312, intron 2 of 8)	-5272	NM_001308347	57019		NM_020313	ENSG00000005194	CIAPIN1	Anamorsin|CIAE2|DRE2|PRO0915	cytokine induced apoptosis inhibitor 1	protein-coding
199620	chr6	119347651	119349000	+	0	NA	intron (NM_005907, intron 2 of 12)	intron (NM_005907, intron 2 of 12)	1436	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
111472	chr19	3947901	3948600	+	0	NA	Intergenic	AluY|SINE|Alu	13262	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
85823	chr16	56994171	56994600	+	0	NA	intron (NR_169520, intron 1 of 47)	intron (NR_169520, intron 1 of 47)	4828	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
215597	chr7	158991771	158992300	+	0	NA	Intergenic	L1MC1|LINE|L1	-16319	NR_024394	154822		NM_198345	ENSG00000231419	LINC00689	STORM	long intergenic non-protein coding RNA 689	ncRNA
30656	chr10	80474851	80475150	+	0	NA	intron (NM_001351272, intron 2 of 9)	intron (NM_001351272, intron 2 of 9)	6759	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
186331	chr5	134650501	134651230	+	0	NA	intron (NM_001252231, intron 1 of 12)	AluSq2|SINE|Alu	2080	NM_021982	10802		NM_021982	ENSG00000113615	SEC24A	-	SEC24 homolog A, COPII coat complex component	protein-coding
149039	chr21	14787321	14787580	+	0	NA	Intergenic	Intergenic	131218	NR_146322	107987295		NR_146322		ASMER1	ASMER-1|LINC02246	adipocyte associated metabolic related lncRNA 1	ncRNA
120445	chr19	44448251	44448600	+	0	NA	promoter-TSS (NR_103551)	promoter-TSS (NR_103551)	47	NR_103551	7772		NM_014518	ENSG00000278318	ZNF229	-	zinc finger protein 229	protein-coding
70911	chr14	104093421	104093980	+	0	NA	intron (NM_001080464, intron 3 of 15)	intron (NM_001080464, intron 3 of 15)	8000	NM_001080464	374569		NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT|LYSOLP|hASNase1	asparaginase	protein-coding
96005	chr17	39214751	39215050	+	0	NA	intron (NM_001351360, intron 6 of 10)	intron (NM_001351360, intron 6 of 10)	11045	NM_198993	342667		NM_198993	ENSG00000141750	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
97142	chr17	42559501	42559700	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-2548	NM_001042532	80347		NM_025233	ENSG00000068120	COASY	DPCK|NBIA6|NBP|PCH12|PPAT|UKR1|pOV-2	Coenzyme A synthase	protein-coding
29688	chr10	72052571	72052730	+	0	NA	Intergenic	Intergenic	35901	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
215411	chr7	157584521	157584780	+	0	NA	intron (NM_130842, intron 16 of 21)	intron (NM_130842, intron 16 of 21)	-10228	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
200932	chr6	139156851	139157350	+	0	NA	intron (NM_016217, intron 1 of 3)	MER41A|LTR|ERV1	22020	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
186004	chr5	133929951	133930850	+	0	NA	Intergenic	Intergenic	16723	NR_131252	105664404		NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
196524	chr6	43775951	43776650	+	0	NA	intron (NM_001171624, intron 2 of 7)	intron (NM_001171624, intron 2 of 7)	4332	NM_001287044	7422		NM_003376	ENSG00000112715	VEGFA	L-VEGF|MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
133162	chr2	112749771	112750530	+	0	NA	intron (NM_001304361, intron 5 of 8)	LTR50|LTR|ERVL	14459	NM_152515	150468		NM_152515	ENSG00000169607	CKAP2L	-	cytoskeleton associated protein 2 like	protein-coding
125525	chr2	12856701	12857700	+	0	NA	Intergenic	Intergenic	119833	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
170966	chr3	194489201	194489400	+	0	NA	TTS (NR_033929)	TTS (NR_033929)	2160	NR_033929	401106		NR_033929		ATP13A3-DT	LINC00884	ATP13A3 divergent transcript	ncRNA
130234	chr2	84830151	84830450	+	0	NA	intron (NM_001080824, intron 4 of 5)	intron (NM_001080824, intron 4 of 5)	50784	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
58418	chr12	131920501	131920700	+	0	NA	intron (NM_003565, intron 26 of 27)	AluJo|SINE|Alu	-8676	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
111565	chr19	4054671	4056000	+	0	NA	intron (NM_015898, intron 1 of 2)	intron (NM_015898, intron 1 of 2)	10194	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
13257	chr1	112713101	112713300	+	0	NA	intron (NM_005167, intron 2 of 9)	intron (NM_005167, intron 2 of 9)	2128	NM_005167	333926		NM_005167	ENSG00000155367	PPM1J	PP2C-zeta|PP2CZ|PP2Czeta|PPP2CZ	protein phosphatase, Mg2+/Mn2+ dependent 1J	protein-coding
85781	chr16	56940951	56941430	+	0	NA	intron (NM_014685, intron 6 of 7)	intron (NM_014685, intron 6 of 7)	9048	NM_001272103	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
81789	chr16	11531401	11531600	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-4253	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
24285	chr1	236522401	236522600	+	0	NA	promoter-TSS (NM_006499)	promoter-TSS (NM_006499)	-939	NM_006499	3964		NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
224256	chr9	5950671	5951100	+	0	NA	intron (NM_001017969, intron 4 of 7)	MER2|DNA|TcMar-Tigger	-56941	NR_039811	100616288		NR_039811	ENSG00000263575	MIR4665	mir-4665	microRNA 4665	ncRNA
148947	chr21	10271951	10272700	+	0	NA	Intergenic	AluSx3|SINE|Alu	-141172	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
176674	chr4	100421551	100421650	+	0	NA	intron (NM_001159694, intron 6 of 10)	intron (NM_001159694, intron 6 of 10)	-26353	NR_135619	107399301		NR_135619		SNORA101A	-	small nucleolar RNA, H/ACA box 101A	snoRNA
237135	chrX	106898521	106898830	+	0	NA	Intergenic	Intergenic	-1489	NM_001171092	9075		NM_020384	ENSG00000165376	CLDN2	OAZON|claudin-2	claudin 2	protein-coding
56064	chr12	110575421	110575980	+	0	NA	intron (NM_139283, intron 1 of 5)	intron (NM_139283, intron 1 of 5)	7618	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
122449	chr19	49495301	49496800	+	0	NA	promoter-TSS (NM_001015)	promoter-TSS (NM_001015)	-384	NM_001015	6205		NM_001015	ENSG00000142534	RPS11	S11|uS17	ribosomal protein S11	protein-coding
16479	chr1	154715351	154715450	+	0	NA	intron (NM_170782, intron 5 of 7)	AluSq2|SINE|Alu	-87403	NM_001365045	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
4260	chr1	19647571	19648650	+	0	NA	intron (NM_001278166, intron 1 of 3)	intron (NM_001278166, intron 1 of 3)	500	NM_001278166	4681		NM_005380	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	NBL1, DAN family BMP antagonist	protein-coding
62780	chr13	108463511	108463780	+	0	NA	Intergenic	Intergenic	-132260	NM_015011	23026		NM_015011	ENSG00000041515	MYO16	MYAP3|MYR8|Myo16b|NYAP3|PPP1R107	myosin XVI	protein-coding
194657	chr6	33625051	33625930	+	0	NA	intron (NM_002224, intron 1 of 57)	AluSp|SINE|Alu	4168	NM_002224	3710		NM_002224	ENSG00000096433	ITPR3	CMT1J|IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding
86424	chr16	66874301	66876830	+	0	NA	Intergenic	Intergenic	-4950	NM_001329931	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
150483	chr21	42656671	42656830	+	0	NA	intron (NM_001001580, intron 1 of 13)	intron (NM_001001580, intron 1 of 13)	2998	NM_001001580	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
149333	chr21	29052551	29053380	+	0	NA	intron (NM_006447, intron 16 of 17)	AluJb|SINE|Alu	20683	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
93830	chr17	20852671	20852930	+	0	NA	Intergenic	CpG	-15727	NR_160710	440416		NR_104185	ENSG00000233098	CCDC144NL-AS1	-	CCDC144NL antisense RNA 1	ncRNA
92350	chr17	8179171	8179330	+	0	NA	Intergenic	AluSx|SINE|Alu	-2870	NM_032354	84314		NM_032354	ENSG00000179029	TMEM107	GRVS638|JBTS29|MKS13|PRO1268	transmembrane protein 107	protein-coding
67776	chr14	73741371	73742800	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-16662	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
63574	chr14	20456871	20457450	+	0	NA	TTS (NM_001100814)	TTS (NM_001100814)	1934	NM_001641	328		NM_001641	ENSG00000100823	APEX1	APE|APE1|APEN|APEX|APX|HAP1|REF1	apurinic/apyrimidinic endodeoxyribonuclease 1	protein-coding
223736	chr8	144499701	144499900	+	0	NA	intron (NM_032902, intron 6 of 12)	intron (NM_032902, intron 6 of 12)	-3268	NM_001382665	2875		NM_005309	ENSG00000167701	GPT	AAT1|ALT|ALT1|GPT1|SGPT	glutamic--pyruvic transaminase	protein-coding
141322	chr2	240513771	240514400	+	0	NA	intron (NM_001282771, intron 9 of 17)	intron (NM_001282771, intron 9 of 17)	43903	NM_017844	51281		NM_016552	ENSG00000144504	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding
17089	chr1	156136201	156137000	+	0	NA	intron (NM_170707, intron 7 of 11)	MIRc|SINE|MIR	10430	NM_001257374	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
125847	chr2	24452151	24452650	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-38854	NM_147223	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
173683	chr4	15238771	15239000	+	0	NA	intron (NR_125911, intron 2 of 5)	LTR33|LTR|ERVL	-101103	NM_001135170	114905		NM_031911	ENSG00000163145	C1QTNF7	CTRP7|ZACRP7	C1q and TNF related 7	protein-coding
170998	chr3	194682551	194683250	+	0	NA	Intergenic	Intergenic	-2983	NM_153690	131583		NM_153690	ENSG00000185112	FAM43A	-	family with sequence similarity 43 member A	protein-coding
174350	chr4	38732701	38733550	+	0	NA	Intergenic	(GGT)n|Simple_repeat|Simple_repeat	49865	NM_030956	81793		NM_030956	ENSG00000174123	TLR10	CD290	toll like receptor 10	protein-coding
194907	chr6	34753471	34754630	+	0	NA	Intergenic	AluSc|SINE|Alu	-3044	NR_029472	6631		NM_003093	ENSG00000124562	SNRPC	U1C|Yhc1	small nuclear ribonucleoprotein polypeptide C	protein-coding
168251	chr3	141406951	141407280	+	0	NA	intron (NM_001376166, intron 2 of 2)	intron (NM_001376166, intron 2 of 2)	4101	NM_001376190	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
207709	chr7	46312301	46312500	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	384722	NR_134575	730338		NR_134575	ENSG00000233539	LOC730338	-	uncharacterized LOC730338	ncRNA
137707	chr2	197503571	197504900	+	0	NA	TTS (NM_002157)	TTS (NM_002157)	3856	NM_001202485	100529241		NM_001202485	ENSG00000270757	HSPE1-MOB4	HSPE1-PHOCN	HSPE1-MOB4 readthrough	protein-coding
45328	chr11	118213321	118213580	+	0	NA	promoter-TSS (NM_001286571)	promoter-TSS (NM_001286571)	-504	NM_153206	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
230210	chr9	127825501	127825900	+	0	NA	exon (NM_001278138, exon 5 of 15)	exon (NM_001278138, exon 5 of 15)	9634	NR_136302	102723566		NR_136302	ENSG00000225032	LOC102723566	-	uncharacterized LOC102723566	ncRNA
57117	chr12	121126901	121127100	+	0	NA	Intergenic	AluSx|SINE|Alu	-5876	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
103802	chr17	79081551	79082030	+	0	NA	intron (NM_001042573, intron 6 of 13)	intron (NM_001042573, intron 6 of 13)	6966	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
43884	chr11	88353371	88353530	+	0	NA	Intergenic	Intergenic	-15714	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
77787	chr15	86624601	86625000	+	0	NA	intron (NM_152336, intron 22 of 24)	intron (NM_152336, intron 22 of 24)	-307832	NR_046012	727915		NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA
113985	chr19	10828521	10829800	+	0	NA	TTS (NR_106851)	TTS (NR_106851)	187	NR_106851	102466737		NR_106851	ENSG00000275640	MIR6793	hsa-mir-6793	microRNA 6793	ncRNA
33039	chr10	110841951	110842280	+	0	NA	Intergenic	Intergenic	28789	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
51695	chr12	53178121	53178780	+	0	NA	intron (NM_015989, intron 2 of 16)	AluJb|SINE|Alu	2196	NM_015989	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
184288	chr5	96807171	96808880	+	0	NA	promoter-TSS (NM_001040458)	promoter-TSS (NM_001040458)	-80	NM_001040458	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
7196	chr1	32277921	32278180	+	0	NA	intron (NM_001042771, intron 9 of 12)	AluJr|SINE|Alu	3939	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
163313	chr3	50357671	50358030	+	0	NA	intron (NM_007024, intron 1 of 1)	intron (NM_007024, intron 1 of 1)	1671	NM_007024	11070		NM_007024	ENSG00000126062	TMEM115	PL6	transmembrane protein 115	protein-coding
131066	chr2	88638601	88639280	+	0	NA	Intergenic	L1MB7|LINE|L1	11111	NR_135540	101928403		NR_135540	ENSG00000234028	EIF2AK3-DT	-	EIF2AK3 divergent transcript	ncRNA
9465	chr1	50452721	50452980	+	0	NA	intron (NM_007051, intron 18 of 18)	MIRb|SINE|MIR	-29407	NM_032110	63950		NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
102035	chr17	74860501	74861030	+	0	NA	promoter-TSS (NR_103735)	promoter-TSS (NR_103735)	78	NM_001278553	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
1766	chr1	6029601	6029800	+	0	NA	intron (NM_172130, intron 1 of 14)	MIRc|SINE|MIR	3367	NM_003636	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
100333	chr17	59864201	59864400	+	0	NA	intron (NM_001193611, intron 5 of 6)	AluSq|SINE|Alu	23034	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
44300	chr11	102345901	102346100	+	0	NA	Intergenic	Intergenic	-1182	NM_001166	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
121151	chr19	46346471	46348300	+	0	NA	intron (NM_001204284, intron 1 of 11)	CpG	298	NM_001204284	5536		NM_006247	ENSG00000011485	PPP5C	PP5|PPP5|PPT	protein phosphatase 5 catalytic subunit	protein-coding
111104	chr19	3203551	3204330	+	0	NA	intron (NM_020170, intron 7 of 14)	intron (NM_020170, intron 7 of 14)	18010	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
176773	chr4	102449771	102450080	+	0	NA	intron (NR_136202, intron 2 of 4)	intron (NR_136202, intron 2 of 4)	-51434	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
129692	chr2	70553361	70554480	+	0	NA	promoter-TSS (NM_001308159)	promoter-TSS (NM_001308159)	-94	NM_003236	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
179570	chr4	185216501	185216700	+	0	NA	intron (NM_001378032, intron 1 of 19)	AluSq|SINE|Alu	7043	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
167556	chr3	129383321	129383930	+	0	NA	non-coding (NR_003111, exon 4 of 4)	non-coding (NR_003111, exon 4 of 4)	13723	NR_002992	677797		NR_002992	ENSG00000207088	SNORA7B	ACA7B	small nucleolar RNA, H/ACA box 7B	snoRNA
51660	chr12	53053561	53054800	+	0	NA	intron (NM_198316, intron 6 of 28)	intron (NM_198316, intron 6 of 28)	258	NR_033854	283335		NR_033854	ENSG00000257337	TNS2-AS1	-	TNS2 antisense RNA 1	ncRNA
32555	chr10	103360501	103360780	+	0	NA	Intergenic	AluSp|SINE|Alu	-7336	NM_139052	6877		NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
9732	chr1	53196201	53197450	+	0	NA	promoter-TSS (NM_001330589)	promoter-TSS (NM_001330589)	1	NM_000098	1376		NM_000098	ENSG00000157184	CPT2	CPT1|CPTASE|IIAE4	carnitine palmitoyltransferase 2	protein-coding
234833	chrX	24426401	24426780	+	0	NA	Intergenic	Intergenic	-38696	NM_001142386	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
195771	chr6	40458371	40458530	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	80113	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
183541	chr5	80097571	80097930	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-14085	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
173784	chr4	17583871	17584400	+	0	NA	intron (NM_015907, intron 5 of 12)	intron (NM_015907, intron 5 of 12)	6937	NM_015907	51056		NM_015907	ENSG00000002549	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
236697	chrX	77781051	77781750	+	0	NA	intron (NM_138270, intron 1 of 33)	AluY|SINE|Alu	4816	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
75355	chr15	65530001	65531300	+	0	NA	exon (NM_016395, exon 1 of 11)	exon (NM_016395, exon 1 of 11)	187	NM_016395	51495		NM_016395	ENSG00000074696	HACD3	B-IND1|BIND1|HSPC121|PTPLAD1	3-hydroxyacyl-CoA dehydratase 3	protein-coding
106699	chr18	23385121	23385380	+	0	NA	intron (NR_148385, intron 3 of 13)	intron (NR_148385, intron 3 of 13)	52711	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
132550	chr2	106192021	106192280	+	0	NA	intron (NR_165308, intron 1 of 14)	intron (NR_165308, intron 1 of 14)	2151	NM_025076	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
35504	chr11	1537921	1538380	+	0	NA	Intergenic	(TCTCCT)n|Simple_repeat|Simple_repeat	34121	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
14201	chr1	125181421	125181680	+	0	NA	Intergenic	Intergenic	3662438	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
19264	chr1	172701321	172701780	+	0	NA	Intergenic	L2b|LINE|L2	42447	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
18138	chr1	160746851	160747200	+	0	NA	intron (NM_001282590, intron 1 of 5)	LTR43|LTR|ERV1	7778	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
198169	chr6	95580271	95580630	+	0	NA	intron (NM_024641, intron 1 of 4)	AluY|SINE|Alu	2915	NM_024641	79694		NM_024641	ENSG00000172469	MANEA	ENDO|hEndo	mannosidase endo-alpha	protein-coding
124761	chr2	6998921	6999580	+	0	NA	intron (NM_001349184, intron 3 of 8)	intron (NM_001349184, intron 3 of 8)	66166	NR_146069	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
67572	chr14	71483801	71484000	+	0	NA	intron (NM_001284247, intron 1 of 23)	L2b|LINE|L2	-3961	NR_027046	145474		NR_027046		LOC145474	-	uncharacterized LOC145474	ncRNA
174801	chr4	48109471	48109950	+	0	NA	intron (NM_003328, intron 5 of 14)	LTR103b_Mam|LTR|ERV1?	24540	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
72304	chr15	31197351	31197900	+	0	NA	Intergenic	Intergenic	-18396	NR_135834	102725022		NR_135834		LINC02352	-	long intergenic non-protein coding RNA 2352	ncRNA
110102	chr19	1546151	1547050	+	0	NA	Intergenic	AluSp|SINE|Alu	21458	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
238332	chrX	149536751	149537650	+	0	NA	intron (NR_027455, intron 4 of 9)	intron (NR_027455, intron 4 of 9)	2552	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
61180	chr13	49148201	49148400	+	0	NA	intron (NM_001079673, intron 8 of 25)	L1M2|LINE|L1	37983	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
223532	chr8	144125221	144126030	+	0	NA	Intergenic	L1MC4|LINE|L1	-12149	NM_016458	51236		NM_016458	ENSG00000235173	HGH1	BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B	HGH1 homolog	protein-coding
18831	chr1	167677221	167677480	+	0	NA	intron (NM_001322923, intron 1 of 5)	intron (NM_001322923, intron 1 of 5)	-44632	NM_003953	9019		NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding
126943	chr2	33496851	33497750	+	0	NA	intron (NM_001349980, intron 2 of 18)	intron (NM_001349980, intron 2 of 18)	-16575	NM_015376	25780		NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
47882	chr12	6697721	6698680	+	0	NA	intron (NM_153685, intron 1 of 5)	intron (NM_153685, intron 1 of 5)	2215	NM_001244015	196500		NM_153685	ENSG00000139200	PIANP	C12orf53|LEDA1|PANP|leda-1	PILR alpha associated neural protein	protein-coding
109324	chr19	590251	591500	+	0	NA	intron (NM_001194, intron 1 of 7)	CpG	994	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
50004	chr12	42324771	42325150	+	0	NA	intron (NM_033114, intron 1 of 7)	Tigger3a|DNA|TcMar-Tigger	-1101	NR_107005	102467003		NR_107005	ENSG00000278520	MIR7851	hsa-mir-7851	microRNA 7851	ncRNA
124490	chr19	58566071	58566230	+	0	NA	intron (NM_198055, intron 5 of 5)	AluY|SINE|Alu	6964	NR_027334	100131691		NR_027334	ENSG00000267858	MZF1-AS1	-	MZF1 antisense RNA 1	ncRNA
160701	chr3	32392301	32393250	+	0	NA	intron (NM_138410, intron 1 of 4)	intron (NM_138410, intron 1 of 4)	922	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
20259	chr1	193592201	193592950	+	0	NA	Intergenic	Intergenic	287830	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
101910	chr17	74450821	74451280	+	0	NA	3' UTR (NM_001366261, exon 5 of 5)	3' UTR (NM_001366261, exon 5 of 5)	-15323	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
230128	chr9	127722921	127723700	+	0	NA	exon (NM_001317037, exon 7 of 14)	exon (NM_001317037, exon 7 of 14)	7231	NM_144965	158248		NM_144965	ENSG00000167094	TTC16	-	tetratricopeptide repeat domain 16	protein-coding
201078	chr6	142784371	142784830	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	-146711	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
117151	chr19	19321901	19322400	+	0	NA	intron (NM_015329, intron 1 of 18)	AluYm1|SINE|Alu	1321	NM_015329	23383		NM_015329	ENSG00000129933	MAU2	KIAA0892|MAU2L|SCC4|mau-2	MAU2 sister chromatid cohesion factor	protein-coding
127104	chr2	37633871	37634330	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	37542	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
226193	chr9	65238571	65238730	+	0	NA	Intergenic	L1PA7|LINE|L1	46559	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
166099	chr3	110015221	110015680	+	0	NA	Intergenic	Intergenic	412622	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
73590	chr15	44539221	44540130	+	0	NA	intron (NM_001284336, intron 2 of 5)	AluY|SINE|Alu	2528	NM_003758	8669		NM_003758	ENSG00000104131	EIF3J	EIF3S1|eIF3-alpha|eIF3-p35	eukaryotic translation initiation factor 3 subunit J	protein-coding
68928	chr14	91376801	91377800	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	40520	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
116741	chr19	18471351	18471750	+	0	NA	intron (NM_006532, intron 2 of 11)	AluSx1|SINE|Alu	-33417	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
209043	chr7	74659341	74660200	+	0	NA	intron (NM_001163636, intron 1 of 33)	AluJo|SINE|Alu	2052	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
174665	chr4	41257001	41257630	+	0	NA	promoter-TSS (NR_102709)	promoter-TSS (NR_102709)	387	NM_004181	7345		NM_004181	ENSG00000154277	UCHL1	HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|SPG79A|UCHL-1|Uch-L1	ubiquitin C-terminal hydrolase L1	protein-coding
59961	chr13	31903771	31903930	+	0	NA	intron (NR_027062, intron 1 of 3)	intron (NR_027062, intron 1 of 3)	57067	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
140324	chr2	232525471	232525830	+	0	NA	promoter-TSS (NM_001311196)	promoter-TSS (NM_001311196)	-510	NM_001256657	1144		NM_000751	ENSG00000135902	CHRND	ACHRD|CMS2A|CMS3A|CMS3B|CMS3C|FCCMS|SCCMS	cholinergic receptor nicotinic delta subunit	protein-coding
222209	chr8	133058001	133059400	+	0	NA	TTS (NR_146773)	TTS (NR_146773)	1654	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
167752	chr3	132396421	132396980	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-20802	NM_001329126	23317		NM_015268	ENSG00000138246	DNAJC13	PARK21|RME8	DnaJ heat shock protein family (Hsp40) member C13	protein-coding
162635	chr3	48809571	48810530	+	0	NA	intron (NM_004157, intron 1 of 10)	L2|LINE|L2	37824	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
108980	chr18	79678721	79680980	+	0	NA	promoter-TSS (NM_048368)	promoter-TSS (NM_048368)	47	NM_048368	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
70152	chr14	100290021	100290500	+	0	NA	TTS (NM_001291814)	TTS (NM_001291814)	12903	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
54904	chr12	96046821	96047080	+	0	NA	Intergenic	L1ME3A|LINE|L1	-3430	NM_001256643	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
166142	chr3	111547591	111548350	+	0	NA	intron (NR_134917, intron 2 of 14)	intron (NR_134917, intron 2 of 14)	5773	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
215579	chr7	158830871	158831030	+	0	NA	Intergenic	Intergenic	-1441	NM_020728	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
114963	chr19	14002171	14003080	+	0	NA	intron (NM_002918, intron 1 of 20)	intron (NM_002918, intron 1 of 20)	3695	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
48543	chr12	10218901	10220180	+	0	NA	intron (NM_031412, intron 2 of 3)	AluSg|SINE|Alu	6663	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
73565	chr15	44426351	44428250	+	0	NA	promoter-TSS (NM_016396)	promoter-TSS (NM_016396)	-329	NM_016396	51496		NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129|SCP4	CTD small phosphatase like 2	protein-coding
39936	chr11	62539111	62539930	+	0	NA	intron (NM_024060, intron 1 of 5)	intron (NM_024060, intron 1 of 5)	6144	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
8774	chr1	42769601	42770000	+	0	NA	intron (NM_024097, intron 2 of 4)	AluSx3|SINE|Alu	2551	NR_040733	79078		NM_024097	ENSG00000164008	C1orf50	-	chromosome 1 open reading frame 50	protein-coding
139347	chr2	219630271	219630950	+	0	NA	intron (NR_048551, intron 6 of 22)	L3|LINE|CR1	2980	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
119271	chr19	39530201	39530600	+	0	NA	TTS (NM_152361)	TTS (NM_152361)	2452	NM_152361	126272		NM_152361	ENSG00000176401	EID2B	EID-2B|EID-3	EP300 interacting inhibitor of differentiation 2B	protein-coding
76241	chr15	73980971	73981330	+	0	NA	3' UTR (NM_001256675, exon 6 of 6)	3' UTR (NM_001256675, exon 6 of 6)	11145	NM_001256672	9399		NM_004809	ENSG00000067221	STOML1	SLP-1|STORP|hUNC-24	stomatin like 1	protein-coding
55395	chr12	104461131	104461700	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	4467	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
209349	chr7	76264901	76265500	+	0	NA	intron (NM_001291831, intron 9 of 15)	intron (NM_001291831, intron 9 of 15)	-37473	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
30899	chr10	87042121	87042780	+	0	NA	Intergenic	AluJb|SINE|Alu	22156	NM_001146157	643161		NM_001146157	ENSG00000188100	FAM25A	bA96C23.5	family with sequence similarity 25 member A	protein-coding
166393	chr3	113534401	113535150	+	0	NA	intron (NM_001322297, intron 1 of 24)	intron (NM_001322297, intron 1 of 24)	2220	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
138933	chr2	218232221	218233030	+	0	NA	intron (NM_152862, intron 4 of 10)	AluY|SINE|Alu	15228	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
87513	chr16	71853851	71854350	+	0	NA	3' UTR (NM_001137675, exon 3 of 3)	3' UTR (NM_001137675, exon 3 of 3)	8124	NM_001137675	342371		NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1 like	protein-coding
28121	chr10	43411201	43412030	+	0	NA	Intergenic	AluSx|SINE|Alu	-2367	NM_001098204	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
94990	chr17	32351771	32352280	+	0	NA	intron (NM_001098507, intron 2 of 11)	AluSq2|SINE|Alu	1868	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
190730	chr6	330201	330400	+	0	NA	intron (NR_104473, intron 3 of 5)	intron (NR_104473, intron 3 of 5)	38243	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
139223	chr2	219293471	219293930	+	0	NA	TTS (NR_029688)	TTS (NR_029688)	500	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
4871	chr1	23766851	23767430	+	0	NA	intron (NR_038280, intron 3 of 3)	AluSc|SINE|Alu	11157	NR_038280	100506963		NR_038280	ENSG00000236810	ELOA-AS1	TCEB3-AS1	ELOA antisense RNA 1	ncRNA
60347	chr13	40790921	40791250	+	0	NA	intron (NM_014252, intron 1 of 6)	intron (NM_014252, intron 1 of 6)	1474	NM_014252	10166		NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|LNC-HC|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
201934	chr6	151449101	151449500	+	0	NA	intron (NM_017909, intron 1 of 11)	AluSx3|SINE|Alu	2826	NM_017909	55005		NM_017909	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog	protein-coding
57040	chr12	120760351	120760950	+	0	NA	Intergenic	Intergenic	34824	NM_001302554	35		NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	acyl-CoA dehydrogenase short chain	protein-coding
55360	chr12	104216901	104217130	+	0	NA	intron (NM_001093771, intron 1 of 16)	intron (NM_001093771, intron 1 of 16)	1236	NM_001093771	7296		NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR|TXNR1	thioredoxin reductase 1	protein-coding
220205	chr8	96154671	96155100	+	0	NA	intron (NM_001001557, intron 1 of 1)	intron (NM_001001557, intron 1 of 1)	5921	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
127472	chr2	42224801	42225200	+	0	NA	intron (NM_019063, intron 1 of 22)	L1MB4|LINE|L1	-54769	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226342	chr9	69504821	69504900	+	0	NA	intron (NM_001163, intron 2 of 12)	HAL1|LINE|L1	167511	NM_001163	320		NM_001163	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta precursor protein binding family A member 1	protein-coding
17955	chr1	160417071	160417530	+	0	NA	intron (NM_020335, intron 3 of 7)	intron (NM_020335, intron 3 of 7)	16736	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
52243	chr12	54408051	54408350	+	0	NA	exon (NM_002205, exon 7 of 30)	exon (NM_002205, exon 7 of 30)	11066	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
1104	chr1	2044551	2045630	+	0	NA	Intergenic	CpG	4980	NR_135509	105378591		NR_135509	ENSG00000226969	PRKCZ-DT	-	PRKCZ divergent transcript	ncRNA
160639	chr3	31555021	31555330	+	0	NA	intron (NM_178862, intron 1 of 15)	intron (NM_178862, intron 1 of 15)	22250	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
131232	chr2	95402101	95403300	+	0	NA	promoter-TSS (NM_016044)	promoter-TSS (NM_016044)	-8	NM_016044	51011		NM_016044	ENSG00000115042	FAHD2A	CGI-105	fumarylacetoacetate hydrolase domain containing 2A	protein-coding
43419	chr11	77459671	77459830	+	0	NA	intron (NM_001376282, intron 1 of 15)	AluYk2|SINE|Alu	14344	NM_001376277	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
233617	chrX	376871	377230	+	0	NA	intron (NM_013239, intron 1 of 12)	intron (NM_013239, intron 1 of 12)	9857	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
33487	chr10	119094871	119095030	+	0	NA	Intergenic	Intergenic	-9163	NR_130122	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
103619	chr17	78734171	78734330	+	0	NA	intron (NM_017456, intron 1 of 12)	AluSx|SINE|Alu	2652	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
71655	chr14	106841751	106842050	+	0	NA	Intergenic	HERV3-int|LTR|ERV1	9099	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
94965	chr17	32144271	32144830	+	0	NA	intron (NM_001288755, intron 1 of 18)	intron (NM_001288755, intron 1 of 18)	-1415	NR_136413	105371730		NR_136413	ENSG00000214708	LOC105371730	-	uncharacterized LOC105371730	ncRNA
192860	chr6	27213871	27214030	+	0	NA	Intergenic	Intergenic	-33751	NM_005865	10279		NM_005865	ENSG00000112812	PRSS16	TSSP	serine protease 16	protein-coding
236679	chrX	77046401	77046600	+	0	NA	Intergenic	L1PA3|LINE|L1	-31968	NR_110400	101928469		NR_110400	ENSG00000280870	MIR325HG	MIR384HG	MIR325 host gene	ncRNA
28828	chr10	62371271	62372800	+	0	NA	intron (NR_104162, intron 1 of 3)	L2b|LINE|L2	-2122	NM_199450	22891		NM_014951	ENSG00000138311	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
106677	chr18	23227471	23227630	+	0	NA	intron (NR_023359, intron 4 of 6)	intron (NR_023359, intron 4 of 6)	71725	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
137882	chr2	200844121	200845450	+	0	NA	Intergenic	Intergenic	19776	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
103787	chr17	79022721	79022980	+	0	NA	promoter-TSS (NM_153372)	promoter-TSS (NM_153372)	-84	NM_153372	114897		NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and TNF related 1	protein-coding
93144	chr17	17745571	17745930	+	0	NA	intron (NM_030665, intron 2 of 5)	L2c|LINE|L2	20552	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
233789	chrX	1442001	1442280	+	0	NA	intron (NM_001173473, intron 2 of 12).2	intron (NM_001173473, intron 2 of 12).2	10769	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
9903	chr1	54380301	54381050	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	25719	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
186447	chr5	136564771	136565330	+	0	NA	Intergenic	L1PA16|LINE|L1	-199505	NM_001167576	57113		NM_020389	ENSG00000069018	TRPC7	TRP7	transient receptor potential cation channel subfamily C member 7	protein-coding
90090	chr16	90029371	90029730	+	0	NA	non-coding (NR_122031, exon 1 of 1)	non-coding (NR_122031, exon 1 of 1)	351	NR_122031	750		NM_001214	ENSG00000221819	GAS8-AS1	C16orf3	GAS8 antisense RNA 1	ncRNA
194422	chr6	33081451	33082130	+	0	NA	intron (NM_002121, intron 2 of 5).5	intron (NM_002121, intron 2 of 5).5	-1042	NM_001242525	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
145256	chr20	39049171	39049400	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	86941	NR_033905	60625		NM_021931	ENSG00000101452	DHX35	C20orf15|DDX35|KAIA0875	DEAH-box helicase 35	protein-coding
859	chr1	1618971	1619130	+	0	NA	intron (NM_001170687, intron 2 of 19)	intron (NM_001170687, intron 2 of 19)	3195	NR_146324	142678		NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	MIB E3 ubiquitin protein ligase 2	protein-coding
17437	chr1	156673521	156673950	+	0	NA	intron (NM_006617, intron 2 of 3)	intron (NM_006617, intron 2 of 3)	3672	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
219455	chr8	73091951	73092250	+	0	NA	intron (NM_153225, intron 1 of 4)	intron (NM_153225, intron 1 of 4)	1072	NM_153225	157869		NM_153225	ENSG00000164764	SBSPON	C8orf84|RPESP	somatomedin B and thrombospondin type 1 domain containing	protein-coding
32448	chr10	102631871	102632030	+	0	NA	3' UTR (NM_016169, exon 12 of 12)	3' UTR (NM_016169, exon 12 of 12)	-12529	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
82189	chr16	14942421	14943200	+	0	NA	intron (NR_146231, intron 32 of 38)	intron (NR_146231, intron 32 of 38)	5367	NM_006985	9284		NM_006985	ENSG00000183426	NPIPA1	NPIP|NPIPA|morpheus	nuclear pore complex interacting protein family member A1	protein-coding
197311	chr6	72621701	72622700	+	0	NA	exon (NM_001160130, exon 1 of 13)	exon (NM_001160130, exon 1 of 13)	136	NM_001160130	56479		NM_019842	ENSG00000185760	KCNQ5	Kv7.5|MRD46	potassium voltage-gated channel subfamily Q member 5	protein-coding
41628	chr11	66469671	66470300	+	0	NA	intron (NM_145065, intron 3 of 7)	AluSx1|SINE|Alu	3080	NM_145065	246330		NM_145065	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
90065	chr16	89972021	89973530	+	0	NA	promoter-TSS (NM_145039)	promoter-TSS (NM_145039)	57	NM_145039	92806		NM_145039	ENSG00000293473	CENPBD1P	CENPBD1	CENPB DNA-binding domain containing 1, pseudogene	pseudo
68364	chr14	77738271	77739050	+	0	NA	intron (NM_001318844, intron 5 of 12)	intron (NM_001318844, intron 5 of 12)	-22108	NR_161324	283579		NM_174943	ENSG00000197734	C14orf178	-	chromosome 14 open reading frame 178	ncRNA
39307	chr11	58653951	58654430	+	0	NA	Intergenic	Intergenic	31525	NM_000614	1270		NM_000614	ENSG00000242689	CNTF	HCNTF	ciliary neurotrophic factor	protein-coding
25230	chr10	5949521	5949650	+	0	NA	Intergenic	Intergenic	19343	NM_001351096	3601		NM_002189	ENSG00000134470	IL15RA	CD215	interleukin 15 receptor subunit alpha	protein-coding
156985	chr22	42499151	42499550	+	0	NA	Intergenic	Intergenic	-1229	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
501	chr1	1184021	1185000	+	0	NA	intron (NM_001371649, intron 12 of 15)	intron (NM_001371649, intron 12 of 15)	4829	NM_153254	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
214362	chr7	149620551	149621400	+	0	NA	intron (NR_027788, intron 2 of 7)	intron (NR_027788, intron 2 of 7)	3815	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
127565	chr2	42513371	42513750	+	0	NA	intron (NM_001282755, intron 2 of 17)	intron (NM_001282755, intron 2 of 17)	18991	NM_001282755	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
110474	chr19	2021321	2022280	+	0	NA	Intergenic	Intergenic	-6086	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
61833	chr13	75875351	75875650	+	0	NA	intron (NR_164111, intron 3 of 3)	intron (NR_164111, intron 3 of 3)	-1386	NR_126373	104326189		NR_126373	ENSG00000223458	LMO7DN-IT1	C13orf45-IT1|TCONS_00021569	LMO7DN intronic transcript 1	ncRNA
231802	chr9	132378221	132378580	+	0	NA	intron (NM_007344, intron 10 of 10)	intron (NM_007344, intron 10 of 10)	-23414	NM_015046	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
39109	chr11	48055071	48056730	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-40882	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
79976	chr16	1788171	1789150	+	0	NA	non-coding (NR_104318, exon 6 of 6)	non-coding (NR_104318, exon 6 of 6)	5045	NM_004970	3483		NM_004970	ENSG00000099769	IGFALS	ACLSD|ALS	insulin like growth factor binding protein acid labile subunit	protein-coding
215546	chr7	158792471	158793030	+	0	NA	intron (NM_020728, intron 4 of 21)	L1MB3|LINE|L1	36759	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
57611	chr12	122473651	122474280	+	0	NA	exon (NM_001350935, exon 11 of 11)	exon (NM_001350935, exon 11 of 11)	26967	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
120835	chr19	45505301	45505500	+	0	NA	Intergenic	AluJb|SINE|Alu	-2079	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
190366	chr5	179740171	179740850	+	0	NA	intron (NM_014757, intron 1 of 4)	AluY|SINE|Alu	7688	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
112853	chr19	7547301	7547500	+	0	NA	intron (NM_006702, intron 16 of 34)	L1M4|LINE|L1	11683	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
161230	chr3	39191221	39191680	+	0	NA	intron (NM_194293, intron 1 of 1)	MIR3|SINE|MIR	1145	NM_001351377	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
185933	chr5	132916521	132916780	+	0	NA	intron (NM_014423, intron 5 of 20)	LTR26E|LTR|ERV1	42982	NM_052971	116842		NM_052971	ENSG00000164406	LEAP2	LEAP-2	liver enriched antimicrobial peptide 2	protein-coding
41446	chr11	66086771	66086930	+	0	NA	intron (NM_018026, intron 1 of 23)	AluSz|SINE|Alu	16578	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
178684	chr4	152527471	152528080	+	0	NA	intron (NM_001349798, intron 2 of 13)	AluJr|SINE|Alu	7258	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
62491	chr13	99416551	99418050	+	0	NA	Intergenic	Intergenic	61169	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
44471	chr11	105016321	105016830	+	0	NA	intron (NM_001136112, intron 1 of 9)	L1PA3|LINE|L1	6593	NM_001136110	838		NM_004347	ENSG00000137757	CASP5	ICE(rel)III|ICEREL-III|ICH-3	caspase 5	protein-coding
62805	chr13	109748801	109749200	+	0	NA	Intergenic	Intergenic	20726	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
76958	chr15	78127771	78128230	+	0	NA	intron (NM_001301224, intron 1 of 4)	intron (NM_001301224, intron 1 of 4)	3445	NM_006383	10518		NM_006383	ENSG00000136425	CIB2	DFNB48|KIP2|USH1J	calcium and integrin binding family member 2	protein-coding
82387	chr16	16120821	16121080	+	0	NA	intron (NM_004996, intron 23 of 30)	MIRb|SINE|MIR	102521	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
83702	chr16	28488701	28489300	+	0	NA	intron (NM_001042432, intron 4 of 15)	AluSz|SINE|Alu	3074	NM_001286109	1201		NM_000086	ENSG00000188603	CLN3	BTN1|BTS|JNCL	CLN3 lysosomal/endosomal transmembrane protein, battenin	protein-coding
210426	chr7	100084171	100084330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1673	NM_001278284	7551		NM_017715	ENSG00000166526	ZNF3	A8-51|HF.12|KOX25|PP838|Zfp113	zinc finger protein 3	protein-coding
122765	chr19	50135921	50136280	+	0	NA	Intergenic	L1PB1|LINE|L1	-2236	NR_024231	100170224		NR_024231		SNAR-B1	-	small NF90 (ILF3) associated RNA B1	snRNA
69987	chr14	99971191	99972850	+	0	NA	5' UTR (NM_001330221, exon 1 of 14)	5' UTR (NM_001330221, exon 1 of 14)	598	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
127	chr1	504721	504980	+	0	NA	Intergenic	AluJr|SINE|Alu	-9405	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
23528	chr1	229135751	229135850	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	39001	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
40269	chr11	63813151	63814880	+	0	NA	intron (NM_138471, intron 1 of 5)	CpG	559	NM_138471	144097		NM_138471	ENSG00000168005	SPINDOC	C11orf84|SPIN-DOC	spindlin interactor and repressor of chromatin binding	protein-coding
32626	chr10	103675771	103675930	+	0	NA	intron (NM_014631, intron 6 of 13)	AluSq2|SINE|Alu	2365	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
171614	chr3	197437101	197437500	+	0	NA	Intergenic	Intergenic	72361	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
172805	chr4	2978421	2979480	+	0	NA	intron (NM_001350173, intron 1 of 13)	AluY|SINE|Alu	15379	NM_005307	2868		NM_005307	ENSG00000125388	GRK4	GPRK2L|GPRK4|GRK4a|IT11	G protein-coupled receptor kinase 4	protein-coding
197817	chr6	87730951	87731050	+	0	NA	Intergenic	Intergenic	-28767	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
164631	chr3	66409601	66409800	+	0	NA	intron (NM_001377344, intron 6 of 17)	intron (NM_001377344, intron 6 of 17)	-3542	NM_001377347	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
178783	chr4	153471321	153472450	+	0	NA	intron (NM_015196, intron 2 of 34)	intron (NM_015196, intron 2 of 34)	5525	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
173032	chr4	4856051	4856780	+	0	NA	Intergenic	Intergenic	-3250	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
172661	chr4	2689851	2690230	+	0	NA	intron (NM_001256668, intron 12 of 19)	intron (NM_001256668, intron 12 of 19)	64608	NM_001256668	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
175708	chr4	77156421	77157700	+	0	NA	promoter-TSS (NM_004354)	promoter-TSS (NM_004354)	-147	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
42644	chr11	72430271	72430430	+	0	NA	exon (NM_001258392, exon 2 of 16)	exon (NM_001258392, exon 2 of 16)	4181	NM_030813	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
139841	chr2	230440601	230440800	+	0	NA	intron (NM_001206704, intron 3 of 15)	L1ME2|LINE|L1	23944	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
12596	chr1	109037201	109037950	+	0	NA	intron (NM_001142550, intron 1 of 14)	AluYc3|SINE|Alu	4527	NM_001142551	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
125868	chr2	24517051	24517610	+	0	NA	intron (NM_001362954, intron 1 of 23)	intron (NM_001362954, intron 1 of 23)	25453	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
161384	chr3	41198821	41200650	+	0	NA	intron (NM_001098210, intron 1 of 15)	CpG	230	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
11192	chr1	87684221	87684700	+	0	NA	Intergenic	Intergenic	-312805	NR_038324	100505768		NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
46925	chr11	134277751	134277850	+	0	NA	exon (NM_001080407, exon 3 of 20)	exon (NM_001080407, exon 3 of 20)	1421	NM_001080407	112937		NM_138416	ENSG00000166105	GLB1L3	-	galactosidase beta 1 like 3	protein-coding
111828	chr19	4513571	4514480	+	0	NA	intron (NM_001367868, intron 4 of 7)	intron (NM_001367868, intron 4 of 7)	4461	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
31424	chr10	95741901	95742100	+	0	NA	intron (NM_001098175, intron 1 of 9)	intron (NM_001098175, intron 1 of 9)	-13652	NM_001312654	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
150158	chr21	38809521	38809780	+	0	NA	intron (NM_005239, intron 1 of 9)	intron (NM_005239, intron 1 of 9)	3721	NM_005239	2114		NM_005239	ENSG00000157557	ETS2	ETS2IT1	ETS proto-oncogene 2, transcription factor	protein-coding
60149	chr13	39942721	39943100	+	0	NA	Intergenic	Intergenic	-238899	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
171713	chr3	197907851	197908200	+	0	NA	intron (NM_032263, intron 9 of 11)	intron (NM_032263, intron 9 of 11)	41900	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
105225	chr17	82351471	82352230	+	0	NA	Intergenic	Intergenic	-7397	NM_207459	400629		NM_207459	ENSG00000182459	TEX19	-	testis expressed 19	protein-coding
83348	chr16	25040501	25040750	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	8884	NR_038379	554206		NR_038379	ENSG00000291179	LOC554206	-	leucine carboxyl methyltransferase 1 pseudogene	pseudo
199927	chr6	127891521	127892600	+	0	NA	intron (NM_001164687, intron 1 of 5).2	L2a|LINE|L2	9021	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
203066	chr6	166258901	166259650	+	0	NA	Intergenic	AluSx1|SINE|Alu	22306	NR_125862	101929297		NR_125862	ENSG00000233365	LOC101929297	-	uncharacterized LOC101929297	ncRNA
228636	chr9	105887751	105887850	+	0	NA	Intergenic	L3|LINE|CR1	193259	NM_018112	55151		NM_018112	ENSG00000095209	TMEM38B	C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1	transmembrane protein 38B	protein-coding
198237	chr6	99204751	99204850	+	0	NA	Intergenic	L1PA3|LINE|L1	80191	NR_039672	100616347		NR_039672	ENSG00000265226	MIR548AI	-	microRNA 548ai	ncRNA
71214	chr14	105091801	105092250	+	0	NA	Intergenic	Intergenic	-2122	NR_110546	102723354		NR_110546		LINC02298	-	long intergenic non-protein coding RNA 2298	ncRNA
168314	chr3	141600171	141600530	+	0	NA	intron (NM_001303246, intron 20 of 24)	intron (NM_001303246, intron 20 of 24)	-62849	NR_136190	646730		NR_136190		LINC02618	-	long intergenic non-protein coding RNA 2618	ncRNA
14886	chr1	146934501	146935130	+	0	NA	Intergenic	MER51D|LTR|ERV1	-3730	NM_001278141	149013		NM_001278141	ENSG00000268043	NBPF12	COAS1|KIAA1245	NBPF member 12	protein-coding
167880	chr3	135585151	135585250	+	0	NA	Intergenic	L1PA2|LINE|L1	-380528	NM_002718	5523		NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
148968	chr21	13874101	13874700	+	0	NA	Intergenic	THE1D-int|LTR|ERVL-MaLR	-26036	NR_026755	54055		NR_026755	ENSG00000290541	CYP4F29P	4F-se4[6:7:8]|C21orf15|CYP4F-se4[6:7:8]|CYP4F3LP	cytochrome P450 family 4 subfamily F member 29, pseudogene	pseudo
128130	chr2	48335851	48336150	+	0	NA	intron (NM_001375445, intron 3 of 7)	AluY|SINE|Alu	21318	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
143518	chr20	31544101	31544300	+	0	NA	intron (NM_178580, intron 3 of 12)	MIR|SINE|MIR	29063	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
106858	chr18	24059921	24060380	+	0	NA	intron (NM_001135993, intron 1 of 13)	L1PA13|LINE|L1	-44690	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
10695	chr1	74732501	74734530	+	0	NA	promoter-TSS (NM_001889)	promoter-TSS (NM_001889)	-107	NM_001130042	1429		NM_001889	ENSG00000116791	CRYZ	-	crystallin zeta	protein-coding
168087	chr3	138201221	138201580	+	0	NA	intron (NM_001363942, intron 2 of 21)	L2c|LINE|L2	13869	NM_015396	25852		NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
156492	chr22	41281801	41282930	+	0	NA	intron (NM_001317930, intron 1 of 15)	AluY|SINE|Alu	3822	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
116412	chr19	18000021	18002070	+	0	NA	promoter-TSS (NM_001025604)	promoter-TSS (NM_001025604)	-79	NM_001025604	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
204556	chr7	5140151	5140730	+	0	NA	intron (NR_034163, intron 1 of 5)	AluSx1|SINE|Alu	4106	NR_034163	645700		NR_034163	ENSG00000291037	ZNF890P	-	zinc finger protein 890, pseudogene	pseudo
146762	chr20	50850751	50851350	+	0	NA	intron (NM_198799, intron 4 of 4)	intron (NM_198799, intron 4 of 4)	55989	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
221184	chr8	120710201	120710600	+	0	NA	intron (NM_021021, intron 1 of 6)	MIR3|SINE|MIR	-50853	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
36789	chr11	9476551	9476850	+	0	NA	intron (NM_001282656, intron 5 of 15)	intron (NM_001282656, intron 5 of 15)	15688	NM_003442	7702		NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
46717	chr11	128865621	128866200	+	0	NA	intron (NM_153766, intron 1 of 2)	intron (NM_153766, intron 1 of 2)	1386	NM_153765	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
125896	chr2	24743971	24744430	+	0	NA	intron (NM_147233, intron 17 of 20)	Charlie24|DNA|hAT-Charlie	-48915	NM_024322	79172		NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
90320	chr17	1117751	1118250	+	0	NA	intron (NM_001322840, intron 2 of 22).2	intron (NM_001322840, intron 2 of 22).2	8572	NM_001322840	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
183416	chr5	78291601	78292000	+	0	NA	intron (NM_003664, intron 1 of 26)	L1MC4|LINE|L1	2898	NM_003664	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
228114	chr9	96617701	96618100	+	0	NA	intron (NR_147239, intron 1 of 14)	intron (NR_147239, intron 1 of 14)	1943	NM_003671	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
84125	chr16	29678801	29679000	+	0	NA	promoter-TSS (NM_001318249)	promoter-TSS (NM_001318249)	-108	NM_001318249	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
176218	chr4	84498071	84498230	+	0	NA	exon (NM_006168, exon 1 of 3)	exon (NM_006168, exon 1 of 3)	1142	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
10660	chr1	70413971	70414730	+	0	NA	intron (NM_153742, intron 1 of 10)	AluSc|SINE|Alu	3082	NM_001902	1491		NM_001902	ENSG00000116761	CTH	CGL|CSE	cystathionine gamma-lyase	protein-coding
235045	chrX	40097401	40098790	+	0	NA	promoter-TSS (NM_017745)	promoter-TSS (NM_017745)	-137	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
161017	chr3	37863071	37863230	+	0	NA	intron (NM_005808, intron 1 of 6)	intron (NM_005808, intron 1 of 6)	1270	NM_001008392	10217		NM_005808	ENSG00000144677	CTDSPL	C3orf8|HYA22|PSR1|RBSP3|SCP3	CTD small phosphatase like	protein-coding
4521	chr1	21814401	21815150	+	0	NA	exon (NM_001013693, exon 2 of 5)	exon (NM_001013693, exon 2 of 5)	2510	NM_001013693	401944		NM_001013693	ENSG00000187942	LDLRAD2	-	low density lipoprotein receptor class A domain containing 2	protein-coding
944	chr1	1741471	1741630	+	0	NA	intron (NM_182838, intron 1 of 5)	AluSc8|SINE|Alu	4449	NM_182838	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
234443	chrX	16892771	16893130	+	0	NA	Intergenic	LTR50|LTR|ERVL	-22588	NM_002893	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
13531	chr1	115052371	115052780	+	0	NA	intron (NM_001308316, intron 6 of 6)	intron (NM_001308316, intron 6 of 6)	18629	NM_001277991	7252		NM_000549	ENSG00000134200	TSHB	TSH-B|TSH-BETA	thyroid stimulating hormone subunit beta	protein-coding
148996	chr21	14453201	14453680	+	0	NA	Intergenic	Intergenic	-70294	NM_006948	6782		NM_006948	ENSG00000155304	HSPA13	STCH	heat shock protein family A (Hsp70) member 13	protein-coding
191201	chr6	5422451	5422550	+	0	NA	intron (NM_001375258, intron 3 of 5)	intron (NM_001375258, intron 3 of 5)	35575	NR_125847	101927972		NR_125846	ENSG00000269985	FARS2-AS1	-	FARS2 antisense RNA 1	ncRNA
162552	chr3	48646821	48647080	+	0	NA	intron (NM_001407, intron 20 of 34)	intron (NM_001407, intron 20 of 34)	-2670	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
203098	chr6	166416151	166416250	+	0	NA	intron (NM_021135, intron 19 of 20)	intron (NM_021135, intron 19 of 20)	-33260	NR_164831	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
236990	chrX	101617101	101618200	+	0	NA	intron (NR_033669, intron 1 of 3)	intron (NR_033669, intron 1 of 3)	350	NR_033669	54470		NM_019007	ENSG00000198960	ARMCX6	GASP10	armadillo repeat containing X-linked 6	protein-coding
213864	chr7	142313351	142314050	+	0	NA	Intergenic	Intergenic	-41451	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
236646	chrX	75172271	75173030	+	0	NA	intron (NM_001363821, intron 3 of 9)	LTR12C|LTR|ERV1	16281	NM_001363821	139596		NM_145052	ENSG00000094841	UPRT	FUR1|UPP	uracil phosphoribosyltransferase homolog	protein-coding
194950	chr6	35266851	35267150	+	0	NA	intron (NM_003427, intron 1 of 13)	AluYm1|SINE|Alu	7265	NM_001292032	7629		NM_003427	ENSG00000065029	ZNF76	D6S229E|ZNF523|Zfp523	zinc finger protein 76	protein-coding
174307	chr4	38529251	38530070	+	0	NA	Intergenic	Intergenic	-6480	NR_110951	101928776		NR_110951	ENSG00000249534	LINC01258	-	long intergenic non-protein coding RNA 1258	ncRNA
37581	chr11	19276951	19277250	+	0	NA	Intergenic	Intergenic	-35445	NM_001256372	79733		NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding
190398	chr5	179803301	179804400	+	0	NA	promoter-TSS (NM_054013)	promoter-TSS (NM_054013)	-975	NM_054013	11282		NM_014275	ENSG00000161013	MGAT4B	GNT-IV|GNT-IVB	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B	protein-coding
198010	chr6	90103201	90103830	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	193328	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
136140	chr2	174247701	174248920	+	0	NA	intron (NM_001328688, intron 1 of 10)	CpG	222	NM_001328688	29789		NM_013341	ENSG00000138430	OLA1	DOC45|GBP45|GTBP9|GTPBP9|PTD004	Obg like ATPase 1	protein-coding
223655	chr8	144357721	144360880	+	0	NA	promoter-TSS (NM_012162)	promoter-TSS (NM_012162)	687	NM_001363122	79581		NM_024531	ENSG00000185803	SLC52A2	BVVLS2|D15Ertd747e|GPCR41|GPR172A|HuPAR-1|PAR1|RFT3|RFVT2|hRFT3	solute carrier family 52 member 2	protein-coding
148640	chr21	5973051	5973230	+	0	NA	exon (NM_017445, exon 1 of 1)	exon (NM_017445, exon 1 of 1)	250	NM_017445	54145		NM_017445	ENSG00000234289	H2BC12L	H2B/s|H2BFS|H2BS1	H2B clustered histone 12 like	protein-coding
85465	chr16	50677251	50678000	+	0	NA	intron (NM_001144972, intron 1 of 3)	intron (NM_001144972, intron 1 of 3)	3687	NM_182854	124460		NM_153337	ENSG00000167208	SNX20	SLIC1	sorting nexin 20	protein-coding
29887	chr10	73060721	73061580	+	0	NA	intron (NM_001017962, intron 5 of 14)	L1MC5a|LINE|L1	35824	NM_001142596	5033		NM_000917	ENSG00000122884	P4HA1	P4HA	prolyl 4-hydroxylase subunit alpha 1	protein-coding
55025	chr12	96383501	96383700	+	0	NA	intron (NM_002595, intron 1 of 16)	L1PA16|LINE|L1	16839	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
28730	chr10	61938821	61939480	+	0	NA	intron (NM_032199, intron 2 of 9)	intron (NM_032199, intron 2 of 9)	37451	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
122839	chr19	50433971	50434930	+	0	NA	intron (NM_004533, intron 1 of 27)	intron (NM_004533, intron 1 of 27)	1558	NM_004533	4606		NM_004533	ENSG00000086967	MYBPC2	MYBPC|MYBPCF|fsMyBP-C	myosin binding protein C2	protein-coding
78890	chr15	100917821	100918400	+	0	NA	non-coding (NR_135831, exon 1 of 2)	non-coding (NR_135831, exon 1 of 2)	1173	NR_135831	101927751		NR_135827	ENSG00000259583	ALDH1A3-AS1	-	ALDH1A3 antisense RNA 1	ncRNA
164709	chr3	67901751	67901850	+	0	NA	intron (NR_109992, intron 6 of 6)	intron (NR_109992, intron 6 of 6)	-89792	NM_001252216	407738		NM_213609	ENSG00000183662	TAFA1	FAM19A1|TAFA-1	TAFA chemokine like family member 1	protein-coding
137750	chr2	197904401	197904630	+	0	NA	intron (NM_006226, intron 1 of 5)	intron (NM_006226, intron 1 of 5)	99922	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
169538	chr3	170164821	170165550	+	0	NA	intron (NM_001308116, intron 4 of 14)	L1MDa|LINE|L1	16548	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
201162	chr6	142937351	142937850	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	7576	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
20779	chr1	201020961	201022500	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	1984	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
63436	chr13	114106571	114106980	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	25848	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
21933	chr1	207862901	207863180	+	0	NA	Intergenic	Intergenic	-40337	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
30525	chr10	79353121	79353580	+	0	NA	intron (NM_005729, intron 5 of 5)	intron (NM_005729, intron 5 of 5)	5881	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
171136	chr3	195547551	195547850	+	0	NA	Intergenic	AluSc|SINE|Alu	-4375	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
120769	chr19	45430251	45430350	+	0	NA	intron (NM_001369412, intron 1 of 9)	MIRb|SINE|MIR	-6354	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
194600	chr6	33456021	33456280	+	0	NA	exon (NM_152735, exon 2 of 2)	exon (NM_152735, exon 2 of 2)	1574	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
85490	chr16	50741101	50743000	+	0	NA	promoter-TSS (NM_001378753)	promoter-TSS (NM_001378753)	-36	NM_001378744	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
223905	chr9	445971	446580	+	0	NA	intron (NM_203447, intron 43 of 47)	intron (NM_203447, intron 43 of 47)	-24016	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
191080	chr6	3628451	3628950	+	0	NA	Intergenic	Intergenic	123013	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
125437	chr2	12005701	12006550	+	0	NA	promoter-TSS (NR_110198)	promoter-TSS (NR_110198)	-991	NR_110197	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
78865	chr15	100383751	100384050	+	0	NA	intron (NR_120374, intron 1 of 4)	intron (NR_120374, intron 1 of 4)	10961	NR_120374	102723320		NR_120374		CERS3-AS1	-	CERS3 antisense RNA 1	ncRNA
71722	chr15	20352371	20352530	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	69706	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
158641	chr3	4989151	4989450	+	0	NA	Intergenic	Intergenic	-9339	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
97218	chr17	42782071	42783250	+	0	NA	intron (NM_032387, intron 1 of 18)	intron (NM_032387, intron 1 of 18)	2050	NM_032387	65266		NM_032387	ENSG00000126562	WNK4	PHA2B|PRKWNK4	WNK lysine deficient protein kinase 4	protein-coding
170809	chr3	189286371	189286730	+	0	NA	intron (NM_198485, intron 4 of 5)	MLT1O|LTR|ERVL-MaLR	-45956	NR_046722	100874027		NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
43843	chr11	87213121	87213680	+	0	NA	intron (NM_022918, intron 5 of 14)	intron (NM_022918, intron 5 of 14)	175466	NM_001168724	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
209376	chr7	76301851	76302900	+	0	NA	promoter-TSS (NM_001540)	promoter-TSS (NM_001540)	-298	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
22905	chr1	225879901	225880450	+	0	NA	intron (NM_014698, intron 1 of 24)	intron (NM_014698, intron 1 of 24)	2205	NM_014698	9725		NM_014698	ENSG00000196187	TMEM63A	HLD19|KIAA0792	transmembrane protein 63A	protein-coding
105838	chr18	2992601	2993100	+	0	NA	intron (NM_001375808, intron 1 of 19)	AluY|SINE|Alu	19097	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
8403	chr1	40400301	40400950	+	0	NA	intron (NM_001198980, intron 1 of 9)	L2b|LINE|L2	3825	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
10593	chr1	67423401	67423800	+	0	NA	intron (NM_001018067, intron 5 of 7)	AluSx1|SINE|Alu	6802	NM_001018067	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
100951	chr17	64491151	64491690	+	0	NA	intron (NM_007215, intron 3 of 7)	AluJo|SINE|Alu	5634	NM_007215	11232		NM_007215	ENSG00000256525	POLG2	HP55|MTDPS16|MTDPS16A|MTDPS16B|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB	DNA polymerase gamma 2, accessory subunit	protein-coding
156504	chr22	41302201	41303400	+	0	NA	promoter-TSS (NM_001317930)	promoter-TSS (NM_001317930)	-431	NM_001317930	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
137007	chr2	190646801	190647000	+	0	NA	Intergenic	Intergenic	-1995	NM_001321313	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
207009	chr7	38359001	38359600	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	17723	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
185214	chr5	120464121	120464450	+	0	NA	promoter-TSS (NM_001300783)	promoter-TSS (NM_001300783)	7	NM_016644	51334		NM_016644	ENSG00000184838	PRR16	DSC54|LARGEN	proline rich 16	protein-coding
217513	chr8	29207071	29207230	+	0	NA	intron (NM_015254, intron 2 of 39)	intron (NM_015254, intron 2 of 39)	55920	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
49297	chr12	21313571	21313800	+	0	NA	intron (NM_134431, intron 5 of 15)	AluSz|SINE|Alu	21232	NM_021094	6579		NM_005075	ENSG00000084453	SLCO1A2	OATP|OATP-A|OATP1A2|SLC21A3	solute carrier organic anion transporter family member 1A2	protein-coding
149865	chr21	35343171	35343330	+	0	NA	Intergenic	MER34A|LTR|ERV1	237514	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
177424	chr4	112510401	112511230	+	0	NA	Intergenic	CpG	-4564	NR_161159	105377372		NR_161159		NEUROG2-AS1	-	NEUROG2 and ZGRF1 antisense RNA 1	ncRNA
115976	chr19	17055321	17055580	+	0	NA	intron (NM_001011699, intron 9 of 10)	intron (NM_001011699, intron 9 of 10)	20002	NM_033417	93323		NM_033417	ENSG00000131351	HAUS8	DGT4|HICE1|NY-SAR-48	HAUS augmin like complex subunit 8	protein-coding
178632	chr4	152244021	152244280	+	0	NA	Intergenic	Intergenic	-93524	NR_104273	102191832		NR_104273	ENSG00000270751	FBXW7-AS1	DEAR|DEspR	FBXW7 antisense RNA 1	ncRNA
208666	chr7	73157071	73157830	+	0	NA	intron (NR_002206, intron 1 of 23)	intron (NR_002206, intron 1 of 23)	-2001	NM_001382504	643862		NM_001382504	ENSG00000274570	SPDYE10	SPDYE10P	speedy/RINGO cell cycle regulator family member E10	protein-coding
223036	chr8	143347721	143347850	+	0	NA	intron (NM_001258447, intron 1 of 13)	intron (NM_001258447, intron 1 of 13)	12192	NM_001258446	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
232438	chr9	136111651	136112380	+	0	NA	Intergenic	Intergenic	-5777	NR_165242	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
92047	chr17	7499271	7499600	+	0	NA	exon (NM_000937, exon 10 of 30)	exon (NM_000937, exon 10 of 30)	15069	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
100601	chr17	63444301	63444780	+	0	NA	intron (NM_001915, intron 1 of 5)	intron (NM_001915, intron 1 of 5)	1644	NM_001017916	1534		NM_001915	ENSG00000008283	CYB561	CGCytb|CYB561A1|FRRS2|ORTHYP2	cytochrome b561	protein-coding
108160	chr18	62716801	62717930	+	0	NA	intron (NM_194449, intron 1 of 16)	intron (NM_194449, intron 1 of 16)	1824	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
67706	chr14	73295121	73295550	+	0	NA	intron (NM_003744, intron 6 of 11)	intron (NM_003744, intron 6 of 11)	-49334	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
63504	chr13	114231101	114231630	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-3480	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
111235	chr19	3513901	3514100	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	7689	NM_016263	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
6469	chr1	28295201	28295600	+	0	NA	Intergenic	AluSp|SINE|Alu	-33640	NM_001127350	54797		NM_017638	ENSG00000130772	MED18	SRB5|p28b	mediator complex subunit 18	protein-coding
4267	chr1	19656721	19657180	+	0	NA	exon (NM_001204086, exon 4 of 4)	exon (NM_001204086, exon 4 of 4)	-7925	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
16409	chr1	154464871	154465600	+	0	NA	exon (NM_001382774, exon 9 of 9)	exon (NM_001382774, exon 9 of 9)	-36984	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
114183	chr19	11395971	11396130	+	0	NA	intron (NM_001161616, intron 18 of 18)	AluJo|SINE|Alu	-11736	NR_033663	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
130564	chr2	85750601	85751150	+	0	NA	Intergenic	Intergenic	-3116	NM_032827	84913		NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding
45193	chr11	117456551	117456850	+	0	NA	intron (NM_020693, intron 19 of 32)	AluSx1|SINE|Alu	128846	NM_014956	22897		NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
213356	chr7	135645321	135645800	+	0	NA	exon (NM_015135, exon 41 of 43)	exon (NM_015135, exon 41 of 43)	-16954	NM_001130929	647087		NM_001130929	ENSG00000243317	STMP1	C7orf73|Mm47|Mtlbn|PL-5283	short transmembrane mitochondrial protein 1	protein-coding
8093	chr1	39090271	39090630	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	6283	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
239452	chrY	56714921	56715580	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-239005	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
202107	chr6	154740451	154740750	+	0	NA	intron (NM_001286199, intron 2 of 20)	L2b|LINE|L2	7184	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
132109	chr2	101442051	101442350	+	0	NA	intron (NM_001367509, intron 4 of 13)	L1MD2|LINE|L1	32912	NM_001367508	731220		NM_207403	ENSG00000196460	RFX8	-	regulatory factor X8	protein-coding
93088	chr17	17641701	17642280	+	0	NA	Intergenic	Intergenic	35698	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
62365	chr13	99221251	99221350	+	0	NA	intron (NR_026644, intron 1 of 8)	(TTTACA)n|Simple_repeat|Simple_repeat	20446	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
149951	chr21	36337101	36337300	+	0	NA	intron (NM_001320445, intron 2 of 15)	intron (NM_001320445, intron 2 of 15)	17003	NM_015358	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
198989	chr6	110902751	110903050	+	0	NA	Intergenic	Intergenic	28116	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
173084	chr4	6225401	6225630	+	0	NA	intron (NR_037863, intron 1 of 3)	intron (NR_037863, intron 1 of 3)	24782	NR_037863	285484		NR_037863		JAKMIP1-DT	LINC02495	JAKMIP1 divergent transcript	ncRNA
216480	chr8	19779371	19779800	+	0	NA	Intergenic	Intergenic	-21556	NR_148897	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
159600	chr3	15186971	15187280	+	0	NA	intron (NR_027927, intron 1 of 4)	L1PA3|LINE|L1	18834	NR_027927	344875		NR_027927	ENSG00000291281	COL6A4P1	COL6A4|COL6A4P|DIVA|DVWA|FAME3|VWA6	collagen type VI alpha 4 pseudogene 1	pseudo
195071	chr6	35522601	35523850	+	0	NA	Intergenic	Intergenic	-10329	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
161332	chr3	39809221	39809530	+	0	NA	promoter-TSS (NM_001284425)	promoter-TSS (NM_001284425)	-234	NM_015460	25924		NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
117885	chr19	32677551	32678230	+	0	NA	3' UTR (NM_207391, exon 1 of 1)	3' UTR (NM_207391, exon 1 of 1)	2042	NM_207391	388531		NM_207391	ENSG00000186326	RGS9BP	PERRS|PERRS2|R9AP|RGS9	regulator of G protein signaling 9 binding protein	protein-coding
77397	chr15	83068971	83069750	+	0	NA	Intergenic	LTR12F|LTR|ERV1	2025	NR_039740	100616404		NR_039740	ENSG00000263643	MIR4515	mir-4515	microRNA 4515	ncRNA
78456	chr15	92850321	92850980	+	0	NA	Intergenic	Intergenic	-32193	NR_037600	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
107902	chr18	57077751	57078330	+	0	NA	Intergenic	Intergenic	-5921	NR_152602	100885779		NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR|lincRNA-ST8SIA3	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
89990	chr16	89862371	89862780	+	0	NA	intron (NM_032451, intron 10 of 14)	intron (NM_032451, intron 10 of 14)	-11017	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
100865	chr17	64270671	64271330	+	0	NA	Intergenic	Intergenic	-7740	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
191919	chr6	15481751	15482050	+	0	NA	intron (NM_001267040, intron 5 of 17)	intron (NM_001267040, intron 5 of 17)	181128	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
30623	chr10	80253601	80253880	+	0	NA	non-coding (NR_136612, exon 6 of 6)	non-coding (NR_136612, exon 6 of 6)	5982	NR_136612	100130698		NR_136612		LOC100130698	-	uncharacterized LOC100130698	ncRNA
234365	chrX	15744221	15744680	+	0	NA	intron (NM_007220, intron 1 of 7)	intron (NM_007220, intron 1 of 7)	6180	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
85856	chr16	57025051	57025650	+	0	NA	intron (NM_001384955, intron 5 of 47)	intron (NM_001384955, intron 5 of 47)	35793	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
120228	chr19	42315621	42315880	+	0	NA	intron (NM_173633, intron 8 of 14)	AluSg|SINE|Alu	2441	NM_173633	284339		NM_173633	ENSG00000167619	TMEM145	-	transmembrane protein 145	protein-coding
176073	chr4	82798351	82799950	+	0	NA	promoter-TSS (NM_001037582)	promoter-TSS (NM_001037582)	-293	NM_024906	79966		NM_024906	ENSG00000145284	SCD5	ACOD4|DFNA79|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
169323	chr3	159765001	159765200	+	0	NA	TTS (NR_121669)	TTS (NR_121669)	3512	NR_121669	100874433		NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA
62390	chr13	99270771	99270930	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-12422	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
44370	chr11	102473521	102473780	+	0	NA	intron (NR_135076, intron 1 of 2)	MER50|LTR|ERV1	6395	NR_135076	102723838		NR_135076	ENSG00000255482	LOC102723838	-	uncharacterized LOC102723838	ncRNA
126457	chr2	28346521	28347250	+	0	NA	Intergenic	Intergenic	-36426	NR_038319	100505716		NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
5513	chr1	25777321	25777580	+	0	NA	intron (NM_001385185, intron 7 of 10)	intron (NM_001385185, intron 7 of 10)	-22743	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
149601	chr21	33324101	33326130	+	0	NA	exon (NM_000629, exon 1 of 11)	exon (NM_000629, exon 1 of 11)	145	NM_001384503	3454		NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC|IMD106	interferon alpha and beta receptor subunit 1	protein-coding
237204	chrX	108026201	108026500	+	0	NA	Intergenic	Intergenic	-18620	NM_001170553	340547		NM_182607	ENSG00000101842	VSIG1	1700062D20Rik|GPA34|dJ889N15.1	V-set and immunoglobulin domain containing 1	protein-coding
102735	chr17	76238021	76238480	+	0	NA	intron (NM_052916, intron 1 of 18)	intron (NM_052916, intron 1 of 18)	2243	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
159950	chr3	17183201	17183400	+	0	NA	intron (NM_001349090, intron 19 of 21)	LTR36|LTR|ERV1	250104	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
131766	chr2	98472321	98473350	+	0	NA	intron (NM_001351429, intron 1 of 23)	MIRb|SINE|MIR	26825	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
136293	chr2	174764271	174764430	+	0	NA	intron (NM_001039523, intron 1 of 9)	intron (NM_001039523, intron 1 of 9)	122	NM_001039523	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
169247	chr3	157153371	157153530	+	0	NA	intron (NM_001308185, intron 3 of 10)	intron (NM_001308185, intron 3 of 10)	6697	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
89965	chr16	89792901	89793500	+	0	NA	intron (NM_001286167, intron 11 of 42)	LTR13|LTR|ERVK	23447	NM_001286167	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
107652	chr18	48982301	48982500	+	0	NA	Intergenic	Intergenic	-31689	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
130105	chr2	74524501	74525600	+	0	NA	exon (NM_133637, exon 3 of 12)	exon (NM_133637, exon 3 of 12)	1181	NM_133637	165545		NM_133637	ENSG00000144045	DQX1	-	DEAQ-box RNA dependent ATPase 1	protein-coding
218335	chr8	42842301	42844150	+	0	NA	promoter-TSS (NM_018105)	promoter-TSS (NM_018105)	100	NM_018105	55145		NM_018105	ENSG00000131931	THAP1	DYT6	THAP domain containing 1	protein-coding
221132	chr8	118414971	118415150	+	0	NA	intron (NM_001349811, intron 3 of 4)	intron (NM_001349811, intron 3 of 4)	-205941	NR_038210	552860		NR_038210		SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA
190854	chr6	1625971	1626130	+	0	NA	intron (NM_001253846, intron 9 of 10)	intron (NM_001253846, intron 9 of 10)	16135	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
88876	chr16	87702401	87703180	+	0	NA	Intergenic	Intergenic	63196	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
91710	chr17	6495871	6496230	+	0	NA	intron (NM_001165966, intron 3 of 18)	intron (NM_001165966, intron 3 of 18)	51595	NM_001195228	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
193610	chr6	30735371	30735530	+	0	NA	intron (NM_001318875, intron 7 of 11).2	AluSz6|SINE|Alu	7237	NM_005803	10211		NM_005803	ENSG00000137312	FLOT1	-	flotillin 1	protein-coding
102869	chr17	76508651	76508750	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-7273	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
186953	chr5	139658571	139659150	+	0	NA	promoter-TSS (NM_001317207)	promoter-TSS (NM_001317207)	-695	NM_001317207	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
232867	chr9	136807121	136808730	+	0	NA	promoter-TSS (NM_001173989)	promoter-TSS (NM_001173989)	-23	NM_024718	55684		NM_017995	ENSG00000196642	RABL6	C9orf86|PARF|RBEL1|pp8875	RAB, member RAS oncogene family like 6	protein-coding
81399	chr16	5239651	5240350	+	0	NA	Intergenic	CpG	-142180	NM_001289029	196483		NM_201400	ENSG00000118894	EEF2KMT	EFM3|FAM86A|SB153|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
228055	chr9	96026501	96026700	+	0	NA	intron (NM_001375291, intron 18 of 18)	(CA)n|Simple_repeat|Simple_repeat	-4789	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
85391	chr16	50294601	50295000	+	0	NA	intron (NM_001114, intron 7 of 25)	intron (NM_001114, intron 7 of 25)	2184	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
65487	chr14	51872571	51872730	+	0	NA	intron (NM_001243774, intron 1 of 2)	intron (NM_001243774, intron 1 of 2)	12038	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
143040	chr20	21232671	21233030	+	0	NA	intron (NM_001276389, intron 9 of 10)	intron (NM_001276389, intron 9 of 10)	-14561	NR_109956	101929591		NR_109956	ENSG00000232712	KIZ-AS1	-	KIZ antisense RNA 1	ncRNA
224915	chr9	32566201	32566980	+	0	NA	non-coding (NR_146061, exon 3 of 3)	non-coding (NR_146061, exon 3 of 3)	6569	NM_002493	4712		NM_002493	ENSG00000165264	NDUFB6	B17|CI	NADH:ubiquinone oxidoreductase subunit B6	protein-coding
153041	chr22	23268651	23269150	+	0	NA	intron (NM_021574, intron 5 of 21)	intron (NM_021574, intron 5 of 21)	6133	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
47551	chr12	4289021	4290230	+	0	NA	intron (NM_001759, intron 4 of 4)	intron (NM_001759, intron 4 of 4)	-13441	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
78305	chr15	90918951	90919250	+	0	NA	intron (NR_135503, intron 22 of 22)	L2b|LINE|L2	-11080	NM_001039675	55898		NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|OOHE|SMAP-1|SMAP1|UNC-45A	unc-45 myosin chaperone A	protein-coding
166777	chr3	122469571	122470130	+	0	NA	intron (NM_002264, intron 2 of 13)	L1MCa|LINE|L1	45089	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
163719	chr3	52299751	52300400	+	0	NA	Intergenic	Intergenic	-5767	NR_029677	406925		NR_029677	ENSG00000207926	MIR135A1	MIRN135-1|MIRN135A1|mir-135a-1	microRNA 135a-1	ncRNA
74449	chr15	59532801	59533000	+	0	NA	Intergenic	Intergenic	-78883	NM_004751	9245		NM_004751	ENSG00000140297	GCNT3	C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding
173317	chr4	7522871	7523030	+	0	NA	intron (NM_020777, intron 2 of 26)	(CCTC)n|Simple_repeat|Simple_repeat	62922	NR_036238	100422826		NR_036238	ENSG00000266690	MIR4274	-	microRNA 4274	ncRNA
75476	chr15	66115201	66116120	+	0	NA	intron (NM_001385030, intron 2 of 20)	MLT1B|LTR|ERVL-MaLR	75427	NR_036196	100422905		NR_036196	ENSG00000263512	MIR4311	-	microRNA 4311	ncRNA
230737	chr9	128831301	128831500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1606	NM_016390	51490		NM_016390	ENSG00000198917	SPOUT1	C9orf114|CENP-32|CENP32|HSPC109	SPOUT domain containing methyltransferase 1	protein-coding
100739	chr17	63928151	63928250	+	0	NA	TTS (NM_001329050)	TTS (NM_001329050)	4131	NM_021602	974		NM_000626	ENSG00000007312	CD79B	AGM6|B29|IGB|Igbeta	CD79b molecule	protein-coding
235469	chrX	46590151	46590730	+	0	NA	intron (NM_019886, intron 1 of 1)	AluJo|SINE|Alu	16675	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
131798	chr2	98518151	98518680	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	72405	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
186603	chr5	138516201	138516600	+	0	NA	intron (NM_001291974, intron 4 of 10)	AluSz6|SINE|Alu	25311	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
176379	chr4	88605351	88606050	+	0	NA	intron (NM_001375479, intron 3 of 25)	intron (NM_001375479, intron 3 of 25)	13220	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
105467	chr17	83056751	83057250	+	0	NA	Intergenic	Intergenic	-5190	NM_001009905	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
169029	chr3	152522801	152523000	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-181910	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
156165	chr22	40211601	40211800	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	33775	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
98913	chr17	48601521	48601850	+	0	NA	intron (NR_110331, intron 3 of 3)	intron (NR_110331, intron 3 of 3)	3301	NM_001369397	3216		NM_018952	ENSG00000108511	HOXB6	HOX2|HOX2B|HU-2|Hox-2.2	homeobox B6	protein-coding
229123	chr9	114434771	114434930	+	0	NA	intron (NM_015404, intron 3 of 11)	L2b|LINE|L2	-8682	NM_001346890	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
70588	chr14	102694301	102694950	+	0	NA	intron (NM_015156, intron 3 of 11)	intron (NM_015156, intron 3 of 11)	-82824	NM_003300	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
154927	chr22	37211121	37211380	+	0	NA	promoter-TSS (NM_001278687)	promoter-TSS (NM_001278687)	-561	NM_001278687	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
106394	chr18	13395351	13395650	+	0	NA	intron (NM_001378099, intron 3 of 6)	intron (NM_001378099, intron 3 of 6)	32034	NR_040031	100288122		NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
52012	chr12	53979501	53979800	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-4694	NR_047517	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
97485	chr17	43831621	43831880	+	0	NA	intron (NR_148343, intron 3 of 19)	intron (NR_148343, intron 3 of 19)	1396	NM_001932	4356		NM_001932	ENSG00000161647	MPP3	DLG3	MAGUK p55 scaffold protein 3	protein-coding
163687	chr3	52249171	52250680	+	0	NA	3' UTR (NM_144641, exon 10 of 10)	3' UTR (NM_144641, exon 10 of 10)	3758	NM_001122870	132160		NM_144641	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein-coding
207303	chr7	44020201	44021150	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1481	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
184406	chr5	98913101	98913500	+	0	NA	intron (NR_157078, intron 2 of 36)	AluJr|SINE|Alu	-15262	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
23467	chr1	228612251	228613300	+	0	NA	promoter-TSS (NR_023363).2	promoter-TSS (NR_023363).2	-148	NR_023368	100169757		NR_023368	ENSG00000200624	RNA5S6	RN5S6	RNA, 5S ribosomal 6	rRNA
198548	chr6	106565021	106565280	+	0	NA	intron (NM_001371242, intron 21 of 21)	AluY|SINE|Alu	53295	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
87254	chr16	69772271	69772730	+	0	NA	intron (NM_001270455, intron 1 of 8)	MER66A|LTR|ERV1	10168	NM_001270454	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
54730	chr12	93674171	93674330	+	0	NA	Intergenic	Intergenic	-3121	NM_001320100	8738		NM_003805	ENSG00000169372	CRADD	MRT34|RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding
186704	chr5	138777371	138777730	+	0	NA	intron (NM_001323982, intron 2 of 18)	SVA_D|Retroposon|SVA	-23626	NR_134244	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
87432	chr16	70696751	70697650	+	0	NA	exon (NM_018052, exon 16 of 19)	exon (NM_018052, exon 16 of 19)	-11147	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
208698	chr7	73281571	73281730	+	0	NA	Intergenic	AluSx1|SINE|Alu	27176	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
201495	chr6	149029871	149030230	+	0	NA	intron (NR_134599, intron 1 of 1)	MIRc|SINE|MIR	2611	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
90421	chr17	1345621	1345880	+	0	NA	intron (NR_024058, intron 6 of 6)	intron (NR_024058, intron 6 of 6)	54472	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
96075	chr17	39601871	39602330	+	0	NA	Intergenic	Intergenic	5820	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
149739	chr21	34404901	34405100	+	0	NA	Intergenic	Intergenic	-3928	NM_001364711	102723451		NM_001364711	ENSG00000277277	LOC102723451	FAM243B	family with sequence similarity 243 member B	protein-coding
46759	chr11	129785401	129785600	+	0	NA	Intergenic	LTR25-int|LTR|ERV1	-30281	NM_001331212	120224		NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
144508	chr20	35693751	35693850	+	0	NA	intron (NR_037570, intron 4 of 13)	AluY|SINE|Alu	5552	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
138800	chr2	216120051	216120550	+	0	NA	intron (NM_021141, intron 5 of 20)	intron (NM_021141, intron 5 of 20)	10952	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
66648	chr14	63872821	63873350	+	0	NA	intron (NM_015180, intron 1 of 114)	L1ME3C|LINE|L1	20081	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
70312	chr14	101819201	101820830	+	0	NA	intron (NM_001161725, intron 3 of 15)	Charlie1a|DNA|hAT-Charlie	10152	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
17729	chr1	158941101	158941500	+	0	NA	intron (NM_152501, intron 4 of 8)	intron (NM_152501, intron 4 of 8)	9748	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
83576	chr16	28144601	28145030	+	0	NA	intron (NM_001270940, intron 10 of 24)	MIRb|SINE|MIR	67150	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
87774	chr16	75333821	75334240	+	0	NA	intron (NM_006324, intron 5 of 6)	intron (NM_006324, intron 5 of 6)	-66023	NM_001170715	9564		NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1 scaffold protein, Cas family member	protein-coding
73009	chr15	40743551	40744850	+	0	NA	exon (NM_001323897, exon 6 of 13)	exon (NM_001323897, exon 6 of 13)	11054	NM_018145	55177		NM_018145	ENSG00000137824	RMDN3	FAM82A2|FAM82C|RMD-3|RMD3|ptpip51	regulator of microtubule dynamics 3	protein-coding
95894	chr17	38886851	38887230	+	0	NA	intron (NM_001271608, intron 2 of 5)	intron (NM_001271608, intron 2 of 5)	16982	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
215199	chr7	155798771	155799130	+	0	NA	Intergenic	Intergenic	10213	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
13707	chr1	116765801	116766000	+	0	NA	intron (NM_001328609, intron 4 of 4)	MIRb|SINE|MIR	11470	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
67223	chr14	68949751	68949850	+	0	NA	intron (NM_001130004, intron 1 of 21)	L1MB3|LINE|L1	29502	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
136415	chr2	176177671	176178430	+	0	NA	promoter-TSS (NR_110468)	promoter-TSS (NR_110468)	79	NR_110458	401022		NR_033979	ENSG00000224189	HAGLR	HOXD-AS1|MIR7704HG|Mdgt|STEEL	HOXD antisense growth-associated long non-coding RNA	ncRNA
141118	chr2	238879621	238879950	+	0	NA	intron (NM_001271893, intron 1 of 1)	L2b|LINE|L2	31700	NM_001271893	117581		NM_057179	ENSG00000233608	TWIST2	AMS|BBRSAY|DERMO1|FFDD3|SETLSS|bHLHa39	twist family bHLH transcription factor 2	protein-coding
12518	chr1	108420221	108420600	+	0	NA	Intergenic	Intergenic	-29933	NM_001143987	653149		NM_001143987	ENSG00000186086	NBPF6	-	NBPF member 6	protein-coding
87615	chr16	74376871	74377180	+	0	NA	promoter-TSS (NM_001306094)	promoter-TSS (NM_001306094)	-927	NM_001306094	440348		NM_001018059	ENSG00000196436	NPIPB15	A-761H5.4|NPIPL2	nuclear pore complex interacting protein family member B15	protein-coding
101383	chr17	67340071	67340430	+	0	NA	3' UTR (NM_001316341, exon 13 of 13)	3' UTR (NM_001316341, exon 13 of 13)	26327	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
77027	chr15	78737901	78738460	+	0	NA	Intergenic	Intergenic	-13857	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
238384	chrX	149962901	149963150	+	0	NA	intron (NR_027456, intron 9 of 11)	intron (NR_027456, intron 9 of 11)	24477	NR_027456	100272228		NR_027456	ENSG00000235703	EOLA2-DT	LINC00894	EOLA2 divergent transcript	ncRNA
223584	chr8	144276201	144276400	+	0	NA	exon (NM_015201, exon 3 of 16)	exon (NM_015201, exon 3 of 16)	9847	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
237810	chrX	129937821	129938280	+	0	NA	Intergenic	Intergenic	31886	NM_006649	10813		NM_006649	ENSG00000156697	UTP14A	NYCO16|SDCCAG16|Utp14|dJ537K23.3	UTP14A small subunit processome component	protein-coding
66426	chr14	61523871	61524030	+	0	NA	intron (NM_006255, intron 10 of 13)	L1MC5|LINE|L1	46244	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
203475	chr7	516721	517580	+	0	NA	intron (NM_033023, intron 2 of 5)	CpG	2694	NM_002607	5154		NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
59872	chr13	30653051	30653350	+	0	NA	exon (NM_001321532, exon 7 of 8)	exon (NM_001321532, exon 7 of 8)	18985	NM_001321534	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
62020	chr13	84705801	84706200	+	0	NA	Intergenic	Intergenic	-77654	NR_132852	106635542		NR_132852		SNORA107	-	small nucleolar RNA, H/ACA box 107	snoRNA
123928	chr19	55368051	55368430	+	0	NA	exon (NM_000641, exon 4 of 5)	exon (NM_000641, exon 4 of 5)	2223	NM_001267718	3589		NM_000641	ENSG00000095752	IL11	AGIF|IL-11	interleukin 11	protein-coding
46279	chr11	124844651	124844950	+	0	NA	Intergenic	Intergenic	-20632	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
12382	chr1	101264351	101265230	+	0	NA	Intergenic	Intergenic	27771	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
71553	chr14	106301151	106301700	+	0	NA	Intergenic	Intergenic	13751	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
226573	chr9	72527001	72527980	+	0	NA	intron (NM_138691, intron 1 of 23)	intron (NM_138691, intron 1 of 23)	5882	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
145103	chr20	38745651	38745950	+	0	NA	Intergenic	Intergenic	-2660	NM_024855	79913		NM_024855	ENSG00000101442	ACTR5	Arp5|INO80M	actin related protein 5	protein-coding
215042	chr7	152467351	152467650	+	0	NA	Intergenic	Intergenic	3376	NR_027387	100128822		NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
36691	chr11	8688351	8689650	+	0	NA	3' UTR (NM_000990, exon 5 of 5)	3' UTR (NM_000990, exon 5 of 5)	3561	NR_002977	677826		NR_002977	ENSG00000212607	SNORA3B	ACA3-2|SNORA45|SNORA45B	small nucleolar RNA, H/ACA box 3B	snoRNA
231314	chr9	130069451	130069550	+	0	NA	intron (NM_001136557, intron 1 of 19)	intron (NM_001136557, intron 1 of 19)	15594	NM_001136557	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
229770	chr9	125198151	125198950	+	0	NA	TTS (NR_135145)	TTS (NR_135145)	1846	NR_135145	105376271		NR_135145		LOC105376271	-	uncharacterized LOC105376271	ncRNA
148188	chr20	63548271	63548430	+	0	NA	promoter-TSS (NM_080823)	promoter-TSS (NM_080823)	-846	NM_080823	6725		NM_080823	ENSG00000125508	SRMS	C20orf148|PTK70|SRM|dJ697K14.1	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding
136688	chr2	181122751	181122850	+	0	NA	Intergenic	L2c|LINE|L2	-1037	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
108313	chr18	63414021	63414580	+	0	NA	intron (NM_004869, intron 1 of 10)	AluSz|SINE|Alu	8176	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
28904	chr10	63130221	63130480	+	0	NA	Intergenic	AluYe6|SINE|Alu	-2897	NM_001282405	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
212136	chr7	116501601	116502050	+	0	NA	intron (NM_001233, intron 2 of 2)	intron (NM_001233, intron 2 of 2)	1779	NM_001206748	858		NM_001233	ENSG00000105971	CAV2	CAV	caveolin 2	protein-coding
189315	chr5	172146601	172146950	+	0	NA	intron (NM_005990, intron 2 of 18)	MER21A|LTR|ERVL	41449	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
37852	chr11	33732001	33732400	+	0	NA	intron (NM_203331, intron 1 of 4)	THE1B|LTR|ERVL-MaLR	4223	NM_000611	966		NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
206718	chr7	36534801	36535200	+	0	NA	intron (NM_001177506, intron 16 of 21)	intron (NM_001177506, intron 16 of 21)	65120	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
103251	chr17	77561271	77561730	+	0	NA	non-coding (NR_040050, exon 2 of 2)	non-coding (NR_040050, exon 2 of 2)	14559	NR_040050	100507351		NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA
112630	chr19	6775001	6776050	+	0	NA	intron (NM_005428, intron 1 of 26)	L2c|LINE|L2	2817	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
203562	chr7	897951	898250	+	0	NA	3' UTR (NM_001284311, exon 9 of 9)	3' UTR (NM_001284311, exon 9 of 9)	21546	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
232361	chr9	135770221	135770500	+	0	NA	exon (NM_001272003, exon 16 of 31)	exon (NM_001272003, exon 16 of 31)	68175	NM_020822	57582		NM_020822	ENSG00000107147	KCNT1	DEE14|EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2	potassium sodium-activated channel subfamily T member 1	protein-coding
168802	chr3	152200451	152200630	+	0	NA	intron (NR_136178, intron 1 of 2)	MIR|SINE|MIR	4889	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
133778	chr2	127681071	127681430	+	0	NA	intron (NM_001161404, intron 1 of 9)	intron (NM_001161404, intron 1 of 9)	536	NM_001161404	55679		NM_017980	ENSG00000072163	LIMS2	LGMD2W|MDRCMTT|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
72864	chr15	40273051	40273550	+	0	NA	intron (NM_001128628, intron 7 of 10)	intron (NM_001128628, intron 7 of 10)	9286	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
146236	chr20	48820071	48820850	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	7539	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
16521	chr1	154933571	154934480	+	0	NA	intron (NM_001323012, intron 1 of 4)	AluSz|SINE|Alu	2694	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
151433	chr21	46131871	46132030	+	0	NA	intron (NM_001849, intron 27 of 27)	CpG	-19425	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
20217	chr1	193143471	193143900	+	0	NA	intron (NM_024529, intron 7 of 16)	intron (NM_024529, intron 7 of 16)	7182	NR_031691	100302163		NR_031691	ENSG00000221680	MIR1278	MIRN1278|hsa-mir-1278|mir-1278	microRNA 1278	ncRNA
61945	chr13	78656671	78657080	+	0	NA	intron (NM_024546, intron 1 of 5)	AluSq2|SINE|Alu	2280	NM_024546	79596		NM_024546	ENSG00000152193	OBI1	C13orf7|RNF219	ORC ubiquitin ligase 1	protein-coding
6705	chr1	29197371	29197780	+	0	NA	intron (NR_146215, intron 7 of 10)	intron (NR_146215, intron 7 of 10)	-15675	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
238230	chrX	140762171	140762330	+	0	NA	intron (NR_104228, intron 3 of 3)	intron (NR_104228, intron 3 of 3)	22308	NM_004065	1038		NM_004065		CDR1	CDR|CDR34|CDR62A	cerebellar degeneration related 1	unknown
104731	chr17	81652701	81653500	+	0	NA	intron (NR_158591, intron 1 of 2)	intron (NR_158591, intron 1 of 2)	614	NM_001365725	5148		NM_002602	ENSG00000185527	PDE6G	PDEG|RP57	phosphodiesterase 6G	protein-coding
894	chr1	1662621	1663080	+	0	NA	3' UTR (NM_001290264, exon 10 of 10)	3' UTR (NM_001290264, exon 10 of 10)	-3846	NM_001787	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
173811	chr4	17817051	17818050	+	0	NA	intron (NR_073124, intron 5 of 19)	intron (NR_073124, intron 5 of 19)	6571	NM_022346	64151		NM_022346	ENSG00000109805	NCAPG	CAPG|CHCG|NY-MEL-3|YCG1	non-SMC condensin I complex subunit G	protein-coding
115949	chr19	16720451	16720550	+	0	NA	intron (NM_001007525, intron 1 of 18)	intron (NM_001007525, intron 1 of 18)	653	NM_001007525	284434		NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding
159422	chr3	13553701	13554100	+	0	NA	intron (NM_001004019, intron 1 of 17)	intron (NM_001004019, intron 1 of 17)	4775	NM_001004019	2199		NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
81197	chr16	4490221	4490730	+	0	NA	intron (NM_001286269, intron 2 of 6)	intron (NM_001286269, intron 2 of 6)	-5344	NM_001286270	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
184094	chr5	93607671	93608330	+	0	NA	Intergenic	Intergenic	12788	NR_031754	100313887		NR_031754	ENSG00000284336	MIR2277	mir-2277	microRNA 2277	ncRNA
99125	chr17	49226551	49226650	+	0	NA	intron (NM_001143804, intron 2 of 2)	intron (NM_001143804, intron 2 of 2)	4166	NM_001143804	162466		NM_178500	ENSG00000173868	PHOSPHO1	-	phosphoethanolamine/phosphocholine phosphatase 1	protein-coding
173536	chr4	10072501	10073000	+	0	NA	Intergenic	Intergenic	5942	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
192473	chr6	24933021	24933300	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	2800	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
143454	chr20	30386251	30386390	+	0	NA	intron (NR_145491, intron 2 of 7)	L1M4|LINE|L1	9156	NR_145491	284802		NM_207350		FRG1BP	C20orf80|FRG1B|bA348I14.2	FSHD region gene 1 family member B, pseudogene	pseudo
185800	chr5	132425001	132426140	+	0	NA	intron (NR_161242, intron 2 of 3)	MIRb|SINE|MIR	14641	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
64234	chr14	23084571	23084930	+	0	NA	intron (NM_001164815, intron 3 of 17)	intron (NM_001164815, intron 3 of 17)	-10755	NM_017924	55017		NM_017924	ENSG00000179933	C14orf119	-	chromosome 14 open reading frame 119	protein-coding
138214	chr2	202717901	202718300	+	0	NA	intron (NM_173511, intron 2 of 7)	L1MA3|LINE|L1	83131	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
162056	chr3	46827621	46827880	+	0	NA	Intergenic	L1ME1|LINE|L1	6073	NR_148409	339906		NM_182702	ENSG00000293419	PRSS42P	PRSS42|TESSP2	serine protease 42, pseudogene	pseudo
201213	chr6	143539371	143540380	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	22176	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
90509	chr17	1462201	1462400	+	0	NA	Intergenic	Intergenic	-6068	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
212614	chr7	129222021	129222680	+	0	NA	Intergenic	Intergenic	-2680	NM_015328	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
54828	chr12	94875651	94875950	+	0	NA	Intergenic	Intergenic	41346	NR_036685	160313		NR_036685	ENSG00000293230	KRT19P2	KRT19P5	keratin 19 pseudogene 2	pseudo
201982	chr6	152289771	152289930	+	0	NA	intron (NM_033071, intron 94 of 145)	AluY|SINE|Alu	-90680	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
211805	chr7	107888751	107889200	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2132	NM_001289751	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
196997	chr6	53303601	53304300	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	26957	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
43935	chr11	93236771	93237030	+	0	NA	Intergenic	Intergenic	-38909	NM_152313	120103		NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
68804	chr14	91245791	91246850	+	0	NA	intron (NM_001348437, intron 1 of 2)	intron (NM_001348437, intron 1 of 2)	-1616	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
39867	chr11	62433801	62434200	+	0	NA	intron (NM_024060, intron 5 of 5)	intron (NM_024060, intron 5 of 5)	14967	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
208283	chr7	65979721	65979980	+	0	NA	exon (NM_001284290, exon 3 of 10)	exon (NM_001284290, exon 3 of 10)	2363	NM_001284290	2990		NM_000181	ENSG00000169919	GUSB	BG|MPS7	glucuronidase beta	protein-coding
107535	chr18	48538551	48539190	+	0	NA	promoter-TSS (NM_001142397)	promoter-TSS (NM_001142397)	-161	NM_014772	9811		NM_014772	ENSG00000134030	CTIF	Gm672|KIAA0427	cap binding complex dependent translation initiation factor	protein-coding
131284	chr2	96100921	96101480	+	0	NA	Intergenic	MIRb|SINE|MIR	15371	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
77199	chr15	80803871	80804280	+	0	NA	intron (NM_018689, intron 1 of 28)	THE1B|LTR|ERVL-MaLR	24705	NM_018689	57214		NM_018689	ENSG00000103888	CEMIP	CCSP1|CEMIP1|HYBID|KIAA1199|TMEM2L	cell migration inducing hyaluronidase 1	protein-coding
205208	chr7	7817021	7817330	+	0	NA	intron (NM_001302350, intron 4 of 4)	L2b|LINE|L2	-98568	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
27561	chr10	32349501	32349930	+	0	NA	intron (NR_104163, intron 1 of 1)	AluJr|SINE|Alu	2351	NR_104163	102031319		NR_104163	ENSG00000229327	EPC1-AS1	-	EPC1 antisense RNA 1	ncRNA
97296	chr17	43211221	43213480	+	0	NA	TTS (NM_001291572)	TTS (NM_001291572)	475	NM_001291586	113277		NM_145041	ENSG00000184988	TMEM106A	-	transmembrane protein 106A	protein-coding
9317	chr1	46531801	46532100	+	0	NA	TTS (NM_001357063)	TTS (NM_001357063)	3565	NM_001357063	105378696		NM_001357063	ENSG00000282881	TMEM275	-	transmembrane protein 275	protein-coding
208912	chr7	74051701	74051980	+	0	NA	intron (NM_001278918, intron 13 of 27)	intron (NM_001278918, intron 13 of 27)	23667	NM_001278917	2006		NM_000501	ENSG00000049540	ELN	ADCL1|SVAS|WBS|WS	elastin	protein-coding
222911	chr8	142841551	142842950	+	0	NA	intron (NM_002066, intron 3 of 3)	THE1C|LTR|ERVL-MaLR	7449	NM_002066	2765		NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
204052	chr7	1950921	1951530	+	0	NA	intron (NM_001304524, intron 14 of 16)	intron (NM_001304524, intron 14 of 16)	-10654	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
64452	chr14	24235401	24235600	+	0	NA	intron (NM_001351024, intron 4 of 10).2	intron (NM_001351024, intron 4 of 10).2	2571	NM_001351026	51292		NM_016576	ENSG00000100938	GMPR2	GMPR 2	guanosine monophosphate reductase 2	protein-coding
214260	chr7	148946271	148946730	+	0	NA	Intergenic	AluSx4|SINE|Alu	5012	NR_001571	6090		NR_001571		RNY5	Y5|hY5	RNA, Ro60-associated Y5	ncRNA
21845	chr1	207361951	207362050	+	0	NA	Intergenic	L2|LINE|L2	40322	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
16670	chr1	155182971	155183330	+	0	NA	intron (NM_001256599, intron 9 of 9)	AluY|SINE|Alu	8396	NM_001256601	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
54121	chr12	76471801	76472000	+	0	NA	intron (NM_001319653, intron 2 of 23)	intron (NM_001319653, intron 2 of 23)	-48615	NM_001319655	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
96493	chr17	40302801	40303750	+	0	NA	3' UTR (NM_001254, exon 12 of 12)	3' UTR (NM_001254, exon 12 of 12)	-5905	NM_000964	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
176346	chr4	88369221	88369530	+	0	NA	Intergenic	Intergenic	-9477	NM_017912	55008		NM_017912	ENSG00000138642	HERC6	-	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein-coding
137834	chr2	200509401	200510600	+	0	NA	promoter-TSS (NM_001321548)	promoter-TSS (NM_001321548)	68	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
215924	chr8	8247801	8248100	+	0	NA	Intergenic	Intergenic	19380	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
234607	chrX	19804571	19804730	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	-4877	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
104609	chr17	81416651	81417350	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-16222	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
231087	chr9	129783551	129784250	+	0	NA	Intergenic	Intergenic	-19243	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
221964	chr8	129974401	129975280	+	0	NA	intron (NM_001353269, intron 1 of 10)	AluJb|SINE|Alu	33613	NR_049826	100847051		NR_049826	ENSG00000264653	MIR5194	mir-5194	microRNA 5194	ncRNA
178555	chr4	151107051	151107550	+	0	NA	Intergenic	AluJr|SINE|Alu	3473	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
212713	chr7	129793451	129793950	+	0	NA	Intergenic	Intergenic	-18686	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
101089	chr17	64929221	64930150	+	0	NA	Intergenic	AluJr|SINE|Alu	-10194	NM_001303255	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
26538	chr10	21519851	21520700	+	0	NA	intron (NM_207371, intron 3 of 3)	intron (NM_207371, intron 3 of 3)	5407	NM_207371	387640		NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
35436	chr11	1442651	1443180	+	0	NA	intron (NM_001256630, intron 5 of 19)	intron (NM_001256630, intron 5 of 19)	31763	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
43457	chr11	78039771	78040200	+	0	NA	intron (NM_001203262, intron 1 of 2)	L1ME4a|LINE|L1	6206	NM_001282406	65987		NM_023930	ENSG00000151364	KCTD14	-	potassium channel tetramerization domain containing 14	protein-coding
81029	chr16	4269121	4269750	+	0	NA	intron (NM_003223, intron 1 of 6)	AluY|SINE|Alu	3588	NM_003223	7023		NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding
85021	chr16	31695471	31696900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4428	NR_024034	100132341		NM_024048	ENSG00000290927	CLUHP3	C16orf67|KIAA0664L3|KIAA0664P3|URLC3	clustered mitochondria homolog pseudogene 3	pseudo
55461	chr12	104670801	104671030	+	0	NA	intron (NM_018413, intron 2 of 2)	(CA)n|Simple_repeat|Simple_repeat	79282	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
51469	chr12	52062171	52063200	+	0	NA	Intergenic	Intergenic	-7289	NM_021934	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
11074	chr1	85203001	85203200	+	0	NA	Intergenic	AluJb|SINE|Alu	-2084	NM_032184	84144		NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
225621	chr9	36217451	36217750	+	0	NA	exon (NM_001190388, exon 11 of 11)	exon (NM_001190388, exon 11 of 11)	26679	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
104959	chr17	81963171	81963330	+	0	NA	Intergenic	Intergenic	-2063	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
238017	chrX	135049071	135049430	+	0	NA	Intergenic	AluJr|SINE|Alu	2885	NM_001078172	26071		NM_015582	ENSG00000203950	RTL8A	CXX1b|FAM127B|MAR8A|SIRH6	retrotransposon Gag like 8A	protein-coding
108019	chr18	58762551	58762850	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-51180	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
234957	chrX	38906951	38907050	+	0	NA	Intergenic	Intergenic	-103117	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
211661	chr7	106269871	106270030	+	0	NA	intron (NM_005746, intron 4 of 10)	L4_B_Mam|LINE|RTE-X	15033	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
131330	chr2	96138451	96139890	+	0	NA	promoter-TSS (NM_001002036)	promoter-TSS (NM_001002036)	-734	NM_001002036	431705		NM_001002036	ENSG00000188886	ASTL	OOMD11|OZEMA11|SAS1B	astacin like metalloendopeptidase	protein-coding
226240	chr9	66695371	66696030	+	0	NA	Intergenic	L1P3|LINE|L1	-205025	NM_033160	26149		NM_033160	ENSG00000274349	ZNF658	-	zinc finger protein 658	protein-coding
48645	chr12	10406521	10407730	+	0	NA	TTS (NM_013431)	TTS (NM_013431)	2632	NM_013431	8302		NM_013431	ENSG00000183542	KLRC4	NKG2-F|NKG2F	killer cell lectin like receptor C4	protein-coding
115588	chr19	15986821	15986950	+	0	NA	Intergenic	L1MA4|LINE|L1	-28749	NR_026828	126536		NM_001034966	ENSG00000205396	LINC00661	-	long intergenic non-protein coding RNA 661	ncRNA
55800	chr12	108689501	108690380	+	0	NA	intron (NM_014325, intron 2 of 10)	intron (NM_014325, intron 2 of 10)	13058	NM_001105237	23603		NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding
118503	chr19	35949901	35950300	+	0	NA	intron (NR_136525, intron 1 of 4)	intron (NR_136525, intron 1 of 4)	2985	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
73663	chr15	44723071	44723600	+	0	NA	Intergenic	Intergenic	5491	NR_162102	113218500		NR_162102		MIR10393	-	microRNA 10393	ncRNA
27292	chr10	30413651	30414400	+	0	NA	Intergenic	AluSp|SINE|Alu	-19996	NM_001244134	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
74813	chr15	63474081	63475200	+	0	NA	Intergenic	MIRb|SINE|MIR	-29871	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
50246	chr12	46247651	46248380	+	0	NA	intron (NM_001077484, intron 1 of 16)	L1PA6|LINE|L1	18501	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
26769	chr10	22846371	22846530	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-81574	NM_001282747	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
157459	chr22	45267101	45267400	+	0	NA	Intergenic	L1ME1|LINE|L1	-17699	NM_006953	7380		NM_006953	ENSG00000100373	UPK3A	UP3A|UPIII|UPIIIA|UPK3	uroplakin 3A	protein-coding
203798	chr7	1253801	1254200	+	0	NA	Intergenic	Intergenic	21128	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
63713	chr14	21197921	21198180	+	0	NA	Intergenic	LTR8|LTR|ERV1	7453	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
126400	chr2	27630151	27630450	+	0	NA	intron (NR_026735, intron 2 of 11)	intron (NR_026735, intron 2 of 11)	1250	NM_007266	11321		NM_007266	ENSG00000198522	GPN1	ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1	GPN-loop GTPase 1	protein-coding
102906	chr17	76556701	76559400	+	0	NA	promoter-TSS (NR_004397)	promoter-TSS (NR_004397)	286	NR_038109	100507246		NR_038108	ENSG00000163597	SNHG16	ELNAT1|Nbla10727|Nbla12061|ncRAN	small nucleolar RNA host gene 16	ncRNA
171319	chr3	195978701	195978900	+	0	NA	intron (NR_003264, intron 7 of 16)	intron (NR_003264, intron 7 of 16)	11479	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
189426	chr5	172849921	172850380	+	0	NA	intron (NM_001031711, intron 1 of 9)	intron (NM_001031711, intron 1 of 9)	15899	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
227805	chr9	93183621	93184360	+	0	NA	promoter-TSS (NM_006648)	promoter-TSS (NM_006648)	-940	NM_001282394	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
220962	chr8	109735221	109735680	+	0	NA	Intergenic	Intergenic	-43659	NM_001099744	55638		NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding
4153	chr1	19359171	19359680	+	0	NA	intron (NM_001206540, intron 4 of 9)	intron (NM_001206540, intron 4 of 9)	47099	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
195893	chr6	41707001	41707260	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	26480	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
235745	chrX	48945621	48946480	+	0	NA	intron (NM_001136159, intron 1 of 8)	intron (NM_001136159, intron 1 of 8)	11557	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
161717	chr3	43773421	43773950	+	0	NA	Intergenic	Intergenic	-82091	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
13219	chr1	112662151	112662750	+	0	NA	intron (NM_006135, intron 7 of 9)	AluY|SINE|Alu	-11862	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
272	chr1	930351	930730	+	0	NA	intron (NM_001385641, intron 3 of 13)	intron (NM_001385641, intron 3 of 13)	4809	NM_152486	148398		NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding
159907	chr3	16912801	16913000	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	-20190	NM_015184	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
96738	chr17	41683721	41683980	+	0	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	-5035	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
176891	chr4	102788651	102789630	+	0	NA	intron (NR_125932, intron 4 of 4)	L1MB5|LINE|L1	12103	NR_125932	102723704		NR_125932		LOC102723704	-	uncharacterized LOC102723704	ncRNA
178389	chr4	147019251	147019350	+	0	NA	Intergenic	Intergenic	-73414	NM_031956	83894		NM_031956	ENSG00000137473	TTC29	NYD-SP14|SPGF42|TBPP2A	tetratricopeptide repeat domain 29	protein-coding
102656	chr17	76074051	76074730	+	0	NA	promoter-TSS (NM_003857)	promoter-TSS (NM_003857)	-391	NM_003857	8811		NM_003857	ENSG00000182687	GALR2	GAL2-R|GALNR2|GALR-2	galanin receptor 2	protein-coding
198567	chr6	107030001	107030200	+	0	NA	5' UTR (NM_001142470, exon 2 of 5)	5' UTR (NM_001142470, exon 2 of 5)	1901	NM_001142468	51250		NM_016487	ENSG00000130349	MTRES1	C6orf203|HSPC230|PRED31	mitochondrial transcription rescue factor 1	protein-coding
149528	chr21	32953251	32953350	+	0	NA	Intergenic	AluSg4|SINE|Alu	-5588	NR_135522	102724502		NR_135522	ENSG00000228961	LINC01690	-	long intergenic non-protein coding RNA 1690	ncRNA
96569	chr17	40478021	40478730	+	0	NA	intron (NM_032865, intron 11 of 12)	intron (NM_032865, intron 11 of 12)	23248	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
56916	chr12	120429001	120429200	+	0	NA	Intergenic	Intergenic	-9013	NM_004373	1337		NM_004373	ENSG00000111775	COX6A1	CMTRID|COX6A|COX6AL	cytochrome c oxidase subunit 6A1	protein-coding
202150	chr6	155174521	155175060	+	0	NA	intron (NM_001384547, intron 8 of 25)	intron (NM_001384547, intron 8 of 25)	-42176	NM_001010927	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
185678	chr5	131757101	131757300	+	0	NA	intron (NM_133372, intron 1 of 17)	intron (NM_133372, intron 1 of 17)	39817	NM_001008738	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
79337	chr16	582051	583000	+	0	NA	intron (NM_004204, intron 10 of 10)	intron (NM_004204, intron 10 of 10)	-6832	NM_001172663	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
146062	chr20	47485971	47486430	+	0	NA	Intergenic	AluJr|SINE|Alu	-15687	NM_181659	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
87930	chr16	79288071	79288430	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	312487	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
159657	chr3	15341121	15341400	+	0	NA	5' UTR (NM_001018009, exon 1 of 9)	5' UTR (NM_001018009, exon 1 of 9)	120	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
168787	chr3	151918301	151918730	+	0	NA	intron (NR_110203, intron 1 of 2)	intron (NR_110203, intron 1 of 2)	9660	NR_110203	101928142		NR_110202		AADACL2-AS1	-	AADACL2 antisense RNA 1	ncRNA
22975	chr1	226076501	226077130	+	0	NA	Intergenic	MIR|SINE|MIR	-6760	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
51593	chr12	52687571	52687830	+	0	NA	Intergenic	Intergenic	-7293	NM_006121	3848		NM_006121	ENSG00000167768	KRT1	AEI2|CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK	keratin 1	protein-coding
105448	chr17	82975421	82976000	+	0	NA	intron (NR_135465, intron 6 of 13)	intron (NR_135465, intron 6 of 13)	31278	NR_135466	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
168619	chr3	149581951	149582330	+	0	NA	intron (NM_001348362, intron 5 of 9)	intron (NM_001348362, intron 5 of 9)	75885	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
24418	chr1	243480701	243480900	+	0	NA	intron (NM_001350251, intron 19 of 20).2	(ATGG)n|Simple_repeat|Simple_repeat	134624	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
169296	chr3	158574571	158575050	+	0	NA	intron (NM_001378851, intron 2 of 6)	intron (NM_001378851, intron 2 of 6)	3616	NM_001369782	4291		NM_022443	ENSG00000178053	MLF1	-	myeloid leukemia factor 1	protein-coding
161560	chr3	42744121	42744650	+	0	NA	intron (NR_046732, intron 3 of 3)	intron (NR_046732, intron 3 of 3)	11810	NR_046732	100874114		NR_046732	ENSG00000173811	CCDC13-AS1	-	CCDC13 antisense RNA 1	ncRNA
133495	chr2	119942101	119942580	+	0	NA	intron (NM_002830, intron 15 of 26)	intron (NM_002830, intron 15 of 26)	-70737	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
58285	chr12	130387401	130387700	+	0	NA	Intergenic	Intergenic	49663	NM_001190971	9271		NM_004764	ENSG00000125207	PIWIL1	CT80.1|HIWI|MIWI|PIWI	piwi like RNA-mediated gene silencing 1	protein-coding
191780	chr6	14128071	14128230	+	0	NA	intron (NM_001040280, intron 2 of 4)	intron (NM_001040280, intron 2 of 4)	10378	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
37918	chr11	34158621	34159030	+	0	NA	intron (NM_145804, intron 14 of 16)	intron (NM_145804, intron 14 of 16)	53196	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
217964	chr8	38295221	38295680	+	0	NA	intron (NM_023034, intron 16 of 23)	AluJb|SINE|Alu	-26218	NM_001354454	84513		NM_032483	ENSG00000147535	PLPP5	DPPL1|HTPAP|PPAPDC1B	phospholipid phosphatase 5	protein-coding
136326	chr2	175156771	175156930	+	0	NA	intron (NR_045772, intron 1 of 14)	MLT1E2|LTR|ERVL-MaLR	10859	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
215177	chr7	155677001	155677200	+	0	NA	intron (NM_053043, intron 3 of 17)	MER94|DNA|hAT-Blackjack	32439	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
120069	chr19	42078751	42078850	+	0	NA	exon (NM_001330519, exon 2 of 2)	exon (NM_001330519, exon 2 of 2)	2634	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
200984	chr6	139374201	139375000	+	0	NA	promoter-TSS (NM_001168389)	promoter-TSS (NM_001168389)	48	NM_006079	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
40686	chr11	64770001	64770330	+	0	NA	intron (NM_201995, intron 4 of 13)	intron (NM_201995, intron 4 of 13)	7596	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
20709	chr1	200740351	200740730	+	0	NA	intron (NM_203459, intron 1 of 16)	intron (NM_203459, intron 1 of 16)	968	NM_203459	23271		NM_203459	ENSG00000118200	CAMSAP2	CAMSAP1L1	calmodulin regulated spectrin associated protein family member 2	protein-coding
224103	chr9	4574301	4574500	+	0	NA	intron (NM_004170, intron 8 of 11)	UCON105|Unknown|Unknown	83932	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
23294	chr1	228063771	228063930	+	0	NA	Intergenic	Intergenic	12700	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
14751	chr1	146005401	146005600	+	0	NA	Intergenic	L2|LINE|L2	-8921	NM_006472	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
232848	chr9	136784251	136784650	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-6894	NM_032928	85014		NM_032928	ENSG00000244187	TMEM141	-	transmembrane protein 141	protein-coding
164009	chr3	53170871	53171400	+	0	NA	intron (NM_001354676, intron 1 of 17)	intron (NM_001354676, intron 1 of 17)	2432	NM_001354676	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
137050	chr2	190885971	190886150	+	0	NA	intron (NM_014905, intron 1 of 17)	AluSc8|SINE|Alu	5239	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
88366	chr16	84591171	84591330	+	0	NA	intron (NM_021149, intron 2 of 3)	AluY|SINE|Alu	26828	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
161689	chr3	43413621	43413880	+	0	NA	intron (NM_001204831, intron 11 of 12)	intron (NM_001204831, intron 11 of 12)	-61788	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
32653	chr10	103768701	103768900	+	0	NA	intron (NM_014631, intron 2 of 13)	MSTB1|LTR|ERVL-MaLR	22021	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
66847	chr14	64969871	64970530	+	0	NA	intron (NM_001330182, intron 1 of 7)	intron (NM_001330182, intron 1 of 7)	2136	NM_198686	376267		NM_198686	ENSG00000139998	RAB15	-	RAB15, member RAS oncogene family	protein-coding
130282	chr2	84880571	84881600	+	0	NA	promoter-TSS (NM_001277053)	promoter-TSS (NM_001277053)	-1	NM_001307978	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
100528	chr17	62481101	62481830	+	0	NA	intron (NM_001375269, intron 2 of 20)	intron (NM_001375269, intron 2 of 20)	352	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
36399	chr11	4068451	4069750	+	0	NA	intron (NR_168438, intron 5 of 9)	intron (NR_168438, intron 5 of 9)	-25585	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
198710	chr6	108164601	108164800	+	0	NA	Intergenic	CpG	-1322	NM_003269	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
227661	chr9	92974551	92975530	+	0	NA	intron (NM_001369952, intron 1 of 16)	intron (NM_001369952, intron 1 of 16)	571	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
97761	chr17	44484601	44484800	+	0	NA	intron (NM_001304940, intron 1 of 9)	L1MC3|LINE|L1	18706	NM_001002909	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
47237	chr12	995571	995730	+	0	NA	intron (NR_027946, intron 1 of 18)	L2a|LINE|L2	4427	NR_027948	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
130913	chr2	87470471	87470650	+	0	NA	intron (NR_146460, intron 2 of 2)	intron (NR_146460, intron 2 of 2)	610	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
43610	chr11	83176501	83176730	+	0	NA	intron (NM_015885, intron 9 of 15)	L1PA6|LINE|L1	10869	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
120363	chr19	43615901	43616300	+	0	NA	intron (NM_182498, intron 1 of 2)	MER21B|LTR|ERVL	3529	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
89492	chr16	89124371	89124730	+	0	NA	intron (NR_147928, intron 8 of 11)	intron (NR_147928, intron 8 of 11)	-11998	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
169268	chr3	157572651	157572750	+	0	NA	intron (NR_166162, intron 4 of 4)	intron (NR_166162, intron 4 of 4)	29388	NR_166164	152078		NM_001099777	ENSG00000293490	SLC66A1LP	C3orf55|PQLC2L|SLC66A1L|SLC66A2L	solute carrier family 66 member 1 like, pseudogene	pseudo
44860	chr11	114168451	114169200	+	0	NA	intron (NM_001354752, intron 2 of 4)	intron (NM_001354752, intron 2 of 4)	-88981	NM_001372047	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
26947	chr10	26534171	26534580	+	0	NA	intron (NM_019043, intron 9 of 14)	intron (NM_019043, intron 9 of 14)	44932	NR_134472	101929117		NR_134472		LINC03028	-	long intergenic non-protein coding RNA 3028	ncRNA
42585	chr11	72005801	72006380	+	0	NA	exon (NM_006185, exon 22 of 27)	exon (NM_006185, exon 22 of 27)	6163	NM_001145055	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
154620	chr22	36309951	36310650	+	0	NA	intron (NM_002473, intron 14 of 40)	AluJo|SINE|Alu	-23393	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
3819	chr1	16861951	16862400	+	0	NA	Intergenic	Intergenic	-3154	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
163980	chr3	53056471	53056650	+	0	NA	Intergenic	Intergenic	-10487	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
122065	chr19	48712851	48713200	+	0	NA	TTS (NM_182574)	TTS (NM_182574)	3932	NM_182574	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
138857	chr2	216682451	216682780	+	0	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	12934	NM_000599	3488		NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
83772	chr16	28734501	28734700	+	0	NA	exon (NM_001099661, exon 17 of 21).2	exon (NM_001099661, exon 17 of 21).2	10348	NR_107058	102465907		NR_107058	ENSG00000278340	MIR6862-2	hsa-mir-6862-2	microRNA 6862-2	ncRNA
208859	chr7	73717121	73718550	+	0	NA	intron (NM_001165903, intron 1 of 9)	intron (NM_001165903, intron 1 of 9)	1834	NM_004603	6804		NM_004603	ENSG00000106089	STX1A	HPC-1|P35-1|STX1|SYN1A	syntaxin 1A	protein-coding
44895	chr11	114639071	114639230	+	0	NA	Intergenic	L1PA3|LINE|L1	-39377	NM_182495	120406		NM_182495	ENSG00000204361	NXPE2	FAM55B	neurexophilin and PC-esterase domain family member 2	protein-coding
62875	chr13	110645821	110646080	+	0	NA	intron (NR_147942, intron 13 of 16)	intron (NR_147942, intron 13 of 16)	30322	NM_001242881	55739		NM_018210	ENSG00000213995	NAXD	CARKD|LP3298|PEBEL2	NAD(P)HX dehydratase	protein-coding
44401	chr11	103125321	103125400	+	0	NA	intron (NM_001377, intron 12 of 88)	intron (NM_001377, intron 12 of 88)	15934	NM_001080463	79659		NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding
49464	chr12	25086871	25087230	+	0	NA	intron (NR_159368, intron 10 of 20)	intron (NR_159368, intron 10 of 20)	34344	NM_006152	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
144621	chr20	35880051	35880750	+	0	NA	intron (NM_016436, intron 9 of 17)	intron (NM_016436, intron 9 of 17)	74102	NM_033630	51282		NM_016558	ENSG00000171222	SCAND1	RAZ1|SDP1	SCAN domain containing 1	protein-coding
164303	chr3	57671221	57672080	+	0	NA	intron (NM_152678, intron 3 of 19)	intron (NM_152678, intron 3 of 19)	21427	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
179190	chr4	173318751	173319100	+	0	NA	intron (NM_001375601, intron 8 of 8)	intron (NM_001375601, intron 8 of 8)	14844	NM_001130689	3148		NM_002129	ENSG00000164104	HMGB2	HMG2	high mobility group box 2	protein-coding
79906	chr16	1646051	1646550	+	0	NA	intron (NM_020825, intron 6 of 20)	L1MC3|LINE|L1	-31979	NM_144570	90861		NM_144570	ENSG00000206053	JPT2	C16orf34|HN1L|L11	Jupiter microtubule associated homolog 2	protein-coding
39179	chr11	57431071	57431230	+	0	NA	Intergenic	Intergenic	-3570	NM_017611	29015		NM_014096	ENSG00000134802	SLC43A3	EEG1|ENBT1|FOAP-13|PRO1659|SEEEG-1	solute carrier family 43 member 3	protein-coding
45016	chr11	117013751	117014100	+	0	NA	intron (NM_001281748, intron 1 of 24)	(GT)n|Simple_repeat|Simple_repeat	84503	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
75534	chr15	66673521	66673790	+	0	NA	intron (NR_110372, intron 3 of 4)	intron (NR_110372, intron 3 of 4)	-28581	NM_005585	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
185351	chr5	127028471	127028930	+	0	NA	intron (NM_178450, intron 1 of 4)	intron (NM_178450, intron 1 of 4)	1858	NM_178450	115123		NM_178450	ENSG00000173926	MARCHF3	MARCH-III|MARCH3|RNF173	membrane associated ring-CH-type finger 3	protein-coding
114458	chr19	12721801	12723250	+	0	NA	promoter-TSS (NM_001136196)	promoter-TSS (NM_001136196)	35	NM_001136196	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
203766	chr7	1196201	1196630	+	0	NA	Intergenic	Intergenic	35630	NR_110070	101927021		NR_110065	ENSG00000229043	ZFAND2A-DT	-	ZFAND2A divergent transcript	ncRNA
18033	chr1	160584251	160584350	+	0	NA	Intergenic	L1PA7|LINE|L1	-4784	NM_001184882	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
218470	chr8	49307271	49307430	+	0	NA	Intergenic	LTR12D|LTR|ERV1	204830	NR_134294	100507464		NR_134294	ENSG00000253380	LOC100507464	-	uncharacterized LOC100507464	ncRNA
104812	chr17	81804801	81805030	+	0	NA	intron (NM_000160, intron 1 of 13)	CpG	765	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
196979	chr6	53171521	53172230	+	0	NA	Intergenic	Intergenic	-23034	NM_003643	8521		NM_003643	ENSG00000137270	GCM1	GCMA|hGCMa	glial cells missing transcription factor 1	protein-coding
171013	chr3	194770551	194770650	+	0	NA	intron (NR_037891, intron 3 of 3)	intron (NR_037891, intron 3 of 3)	-1891	NR_146990	105374293		NR_146990	ENSG00000230401	LINC01972	-	long intergenic non-protein coding RNA 1972	ncRNA
57159	chr12	121301301	121301500	+	0	NA	Intergenic	Intergenic	-3092	NM_153500	10645		NM_006549	ENSG00000110931	CAMKK2	CAMKK|CAMKKB	calcium/calmodulin dependent protein kinase kinase 2	protein-coding
193917	chr6	31635301	31635730	+	0	NA	intron (NM_004638, intron 23 of 30).7	intron (NM_004638, intron 23 of 30).7	1728	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
33854	chr10	124341701	124342530	+	0	NA	Intergenic	Intergenic	76808	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
32334	chr10	102237151	102237450	+	0	NA	intron (NM_005029, intron 1 of 3)	intron (NM_005029, intron 1 of 3)	4212	NM_005029	5309		NM_005029	ENSG00000107859	PITX3	ASGD1|ASMD|ASOD|CTPP4|CTRCT11|PTX3	paired like homeodomain 3	protein-coding
151221	chr21	45236321	45236730	+	0	NA	intron (NR_135279, intron 1 of 2)	intron (NR_135279, intron 1 of 2)	2185	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
141220	chr2	239397221	239397950	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	3435	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
92451	chr17	8472671	8473580	+	0	NA	Intergenic	Intergenic	37241	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
174252	chr4	37998471	37998630	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	38152	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
6354	chr1	27776501	27776980	+	0	NA	intron (NM_177424, intron 1 of 8)	AluJr|SINE|Alu	3521	NM_177424	23673		NM_177424	ENSG00000117758	STX12	STX13|STX14	syntaxin 12	protein-coding
230312	chr9	127961201	127961780	+	0	NA	intron (NM_001035254, intron 1 of 10)	L2a|LINE|L2	-10776	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
175008	chr4	52025871	52026350	+	0	NA	intron (NM_000232, intron 5 of 5)	intron (NM_000232, intron 5 of 5)	-5747	NM_001024611	339977		NM_001024611	ENSG00000188993	LRRC66	-	leucine rich repeat containing 66	protein-coding
173732	chr4	15996901	15997100	+	0	NA	intron (NM_001371408, intron 14 of 24)	intron (NM_001371408, intron 14 of 24)	-33825	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
82797	chr16	21465201	21465800	+	0	NA	intron (NR_027155, intron 11 of 28)	L1MC5|LINE|L1	-31045	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
178083	chr4	140150171	140151300	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	3449	NM_018717	55534		NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3	mastermind like transcriptional coactivator 3	protein-coding
92110	chr17	7582901	7584680	+	0	NA	promoter-TSS (NR_136403)	promoter-TSS (NR_136403)	-62	NM_004870	9526		NM_004870	ENSG00000129255	MPDU1	CDGIF|HBEBP2BPA|Lec35|My008|PP3958|PQLC5|SL15|SLC66A5	mannose-P-dolichol utilization defect 1	protein-coding
159878	chr3	16844821	16845080	+	0	NA	Intergenic	Intergenic	-40005	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
112937	chr19	7696851	7697150	+	0	NA	intron (NM_002002, intron 7 of 10)	intron (NM_002002, intron 7 of 10)	2479	NM_001207019	2208		NM_002002	ENSG00000104921	FCER2	BLAST-2|CD23|CD23A|CLEC4J|FCE2|FCErII|IGEBF	Fc epsilon receptor II	protein-coding
8965	chr1	44485771	44485930	+	0	NA	intron (NM_001319957, intron 1 of 13)	intron (NM_001319957, intron 1 of 13)	-59643	NR_049849	100847089		NR_049849	ENSG00000263381	MIR5584	-	microRNA 5584	ncRNA
15997	chr1	151990721	151991180	+	0	NA	intron (NM_002966, intron 1 of 2)	intron (NM_002966, intron 1 of 2)	2909	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
54627	chr12	92675201	92675600	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-27443	NM_001037671	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
1541	chr1	3452901	3453630	+	0	NA	Intergenic	Intergenic	-1400	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
203284	chr6	169806731	169808550	+	0	NA	Intergenic	Intergenic	-8815	NR_026781	401288		NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
151843	chr22	18533001	18533200	+	0	NA	TTS (NR_003563)	TTS (NR_003563)	5298	NM_001242313	728229		NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
43041	chr11	74030651	74031530	+	0	NA	intron (NM_001286577, intron 31 of 32)	L2c|LINE|L2	-21853	NM_022803	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
34265	chr10	131882051	131882650	+	0	NA	Intergenic	Intergenic	-18658	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
185857	chr5	132498901	132499130	+	0	NA	Intergenic	Intergenic	-8242	NM_001354925	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
109629	chr19	988001	988600	+	0	NA	intron (NM_001372085, intron 4 of 11)	intron (NM_001372085, intron 4 of 11)	3955	NM_024100	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
217132	chr8	25345171	25345930	+	0	NA	TTS (NR_106936)	TTS (NR_106936)	148	NR_106936	102465527		NR_106936	ENSG00000274988	MIR6876	hsa-mir-6876	microRNA 6876	ncRNA
170186	chr3	183701221	183701480	+	0	NA	intron (NM_001351371, intron 1 of 21)	AluYf1|SINE|Alu	3532	NM_001351370	55689		NM_018023	ENSG00000163872	YEATS2	FAME4	YEATS domain containing 2	protein-coding
107427	chr18	46203571	46204350	+	0	NA	intron (NM_145055, intron 1 of 4)	intron (NM_145055, intron 1 of 4)	29926	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
237429	chrX	119661521	119661780	+	0	NA	intron (NM_145799, intron 3 of 10)	intron (NM_145799, intron 3 of 10)	-14802	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
133982	chr2	130806371	130806780	+	0	NA	Intergenic	LTR103b_Mam|LTR|ERV1?	-30339	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
190030	chr5	177506401	177506800	+	0	NA	intron (NM_001144876, intron 2 of 4)	AluSx|SINE|Alu	3226	NM_001384137	79930		NM_024872	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
60050	chr13	32905151	32905250	+	0	NA	intron (NR_047020, intron 3 of 4)	MLT1L|LTR|ERVL-MaLR	6452	NR_047020	100874167		NR_047020		LINC00423	-	long intergenic non-protein coding RNA 423	ncRNA
57357	chr12	121779101	121780180	+	0	NA	exon (NM_019034, exon 5 of 5)	exon (NM_019034, exon 5 of 5)	14048	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
58496	chr12	132162421	132162980	+	0	NA	Intergenic	Intergenic	18243	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
133213	chr2	113173001	113174490	+	0	NA	promoter-TSS (NM_012455)	promoter-TSS (NM_012455)	-226	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
126622	chr2	28801951	28802380	+	0	NA	3' UTR (NM_002709, exon 8 of 8)	3' UTR (NM_002709, exon 8 of 8)	-8669	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
182459	chr5	62327601	62328150	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	21669	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
34290	chr10	131929501	131929700	+	0	NA	intron (NM_001291310, intron 3 of 9)	intron (NM_001291310, intron 3 of 9)	28592	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
206273	chr7	29685301	29686000	+	0	NA	promoter-TSS (NR_024278)	promoter-TSS (NR_024278)	171	NR_027347	100271874		NR_027347		ZNRF2P2	-	zinc and ring finger 2 pseudogene 2	pseudo
36029	chr11	2920121	2920730	+	0	NA	intron (NM_183233, intron 8 of 10)	intron (NM_183233, intron 8 of 10)	8995	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
39668	chr11	61686971	61687130	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	6659	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
21510	chr1	205770601	205770800	+	0	NA	intron (NM_001135664, intron 4 of 4)	intron (NM_001135664, intron 4 of 4)	4782	NM_001135663	8934		NM_003929	ENSG00000117280	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
223262	chr8	143712471	143712830	+	0	NA	non-coding (NR_134306, exon 5 of 6)	non-coding (NR_134306, exon 5 of 6)	-3699	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
83252	chr16	23901321	23901780	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	65567	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
69015	chr14	91505871	91506330	+	0	NA	intron (NR_158976, intron 2 of 16)	AluY|SINE|Alu	4210	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
39377	chr11	59769801	59770000	+	0	NA	intron (NM_004177, intron 1 of 10)	(GT)n|Simple_repeat|Simple_repeat	14524	NM_001178040	6809		NM_004177	ENSG00000166900	STX3	DIAR12|MVID2|RDMVID|STX3A	syntaxin 3	protein-coding
191852	chr6	15253301	15253780	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	4685	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
220134	chr8	94824701	94825230	+	0	NA	non-coding (NR_073445, exon 2 of 28)	non-coding (NR_073445, exon 2 of 28)	1675	NR_073445	55656		NM_017864	ENSG00000164941	INTS8	C8orf52|INT8|NEDCHS	integrator complex subunit 8	protein-coding
138351	chr2	203928871	203929150	+	0	NA	Intergenic	Intergenic	-7753	NM_012092	29851		NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T cell costimulator	protein-coding
123551	chr19	54380121	54380380	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-9694	NM_001289026	3903		NM_002287	ENSG00000167613	LAIR1	CD305|LAIR-1	leukocyte associated immunoglobulin like receptor 1	protein-coding
113504	chr19	10098801	10099600	+	0	NA	intron (NM_031917, intron 1 of 5)	L2a|LINE|L2	3457	NM_001321411	83854		NM_031917	ENSG00000130812	ANGPTL6	AGF|ARP5	angiopoietin like 6	protein-coding
177209	chr4	108409721	108410180	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-147283	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
203330	chr6	170219221	170219880	+	0	NA	Intergenic	CpG	43019	NR_002787	154449		NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
38554	chr11	45919851	45921200	+	0	NA	Intergenic	MIR3|SINE|MIR	-1096	NM_001300722	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
154174	chr22	31308271	31308780	+	0	NA	Intergenic	Intergenic	-15991	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
140629	chr2	233461351	233461650	+	0	NA	intron (NM_001377259, intron 22 of 27)	intron (NM_001377259, intron 22 of 27)	28398	NM_001382302	55230		NM_018218	ENSG00000085982	USP40	-	ubiquitin specific peptidase 40	protein-coding
71082	chr14	104863021	104863480	+	0	NA	Intergenic	Intergenic	-2018	NM_001112726	283638		NM_015005	ENSG00000099814	CEP170B	CEP170R|FAM68C|KIAA0284	centrosomal protein 170B	protein-coding
75115	chr15	64507221	64508150	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	47107	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
6884	chr1	31412801	31414480	+	0	NA	promoter-TSS (NM_001199039)	promoter-TSS (NM_001199039)	-173	NM_001199039	347735		NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
181141	chr5	38379471	38379630	+	0	NA	intron (NM_001205301, intron 6 of 22)	LTR48B|LTR|ERV1	23921	NR_102749	100506475		NR_102749	ENSG00000248572	EGFLAM-AS2	-	EGFLAM antisense RNA 2	ncRNA
55785	chr12	108623621	108624750	+	0	NA	exon (NM_003006, exon 2 of 2)	exon (NM_003006, exon 2 of 2)	7896	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
96820	chr17	41938251	41938550	+	0	NA	intron (NR_146621, intron 5 of 9)	intron (NR_146621, intron 5 of 9)	7783	NR_110662	83538		NM_031421	ENSG00000204815	ODAD4	TTC25	outer dynein arm docking complex subunit 4	protein-coding
64950	chr14	35828171	35828800	+	0	NA	intron (NM_032352, intron 1 of 9)	AluSq2|SINE|Alu	2147	NM_032352	84312		NM_032352	ENSG00000100916	BRMS1L	BRMS1|p40	BRMS1 like transcriptional repressor	protein-coding
233089	chr9	137106821	137107080	+	0	NA	intron (NR_045720, intron 10 of 12)	intron (NR_045720, intron 10 of 12)	7783	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
103087	chr17	77328671	77328830	+	0	NA	intron (NM_006640, intron 1 of 10)	L2a|LINE|L2	9235	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
83434	chr16	27283021	27283480	+	0	NA	intron (NR_037184, intron 2 of 4)	AluSx|SINE|Alu	-14478	NM_145080	197370		NM_145080	ENSG00000169189	NSMCE1	NSE1	NSE1 homolog, SMC5-SMC6 complex component	protein-coding
38042	chr11	35157721	35158430	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	-4875	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
2894	chr1	11657821	11658280	+	0	NA	intron (NM_183413, intron 2 of 4)	intron (NM_183413, intron 2 of 4)	3173	NM_033182	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
221513	chr8	124636171	124636530	+	0	NA	intron (NM_001363300, intron 3 of 12)	AluSz|SINE|Alu	92123	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
236374	chrX	70970371	70970800	+	0	NA	Intergenic	HAL1M8|LINE|L1	-39489	NM_032803	84889		NM_032803	ENSG00000165349	SLC7A3	ATRC3|CAT-3|CAT3	solute carrier family 7 member 3	protein-coding
36197	chr11	3416771	3417750	+	0	NA	Intergenic	Intergenic	-25345	NR_044999	10821		NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
137444	chr2	196963151	196963650	+	0	NA	Intergenic	Intergenic	-36693	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
175464	chr4	72531951	72532050	+	0	NA	intron (NM_014243, intron 3 of 21)	intron (NM_014243, intron 3 of 21)	37221	NM_014243	9508		NM_014243	ENSG00000156140	ADAMTS3	ADAMTS-4|HKLLS3	ADAM metallopeptidase with thrombospondin type 1 motif 3	protein-coding
160001	chr3	18371651	18371950	+	0	NA	intron (NM_001322873, intron 9 of 10)	intron (NM_001322873, intron 9 of 10)	53539	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
24850	chr10	470021	471430	+	0	NA	intron (NM_014974, intron 3 of 36)	intron (NM_014974, intron 3 of 36)	-157839	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
199594	chr6	119148601	119148800	+	0	NA	intron (NM_001288576, intron 1 of 15)	intron (NM_001288576, intron 1 of 15)	493	NM_001288576	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
103314	chr17	77893321	77893880	+	0	NA	Intergenic	Intergenic	-9513	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
234900	chrX	30992571	30992730	+	0	NA	Intergenic	Intergenic	79391	NM_031894	53940		NM_031894	ENSG00000132446	FTHL17	CT38	ferritin heavy chain like 17	protein-coding
120110	chr19	42178801	42180280	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	38137	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
29232	chr10	69087101	69088400	+	0	NA	promoter-TSS (NM_001321054)	promoter-TSS (NM_001321054)	147	NM_001321053	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
160334	chr3	27680801	27681630	+	0	NA	Intergenic	Intergenic	41108	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
50074	chr12	44819401	44819800	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	56061	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
190217	chr5	178230571	178231080	+	0	NA	intron (NR_103509, intron 1 of 9)	MIR|SINE|MIR	1977	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
10469	chr1	66337371	66337800	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	5477	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
220616	chr8	100927401	100927950	+	0	NA	intron (NM_001135702, intron 2 of 5)	intron (NM_001135702, intron 2 of 5)	22896	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
142625	chr20	5612251	5613100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1669	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
127235	chr2	38665251	38666500	+	0	NA	promoter-TSS (NM_138801)	promoter-TSS (NM_138801)	-239	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
146178	chr20	48750251	48750550	+	0	NA	intron (NM_020820, intron 1 of 39)	L2b|LINE|L2	77599	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
131475	chr2	96470621	96470880	+	0	NA	Intergenic	Intergenic	34607	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
72374	chr15	31362951	31363050	+	0	NA	intron (NM_001302461, intron 1 of 1).3	L1ME4b|LINE|L1	36165	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
134156	chr2	134232071	134232900	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	-21587	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
225508	chr9	35690551	35691730	+	0	NA	Intergenic	Intergenic	-1084	NM_001301227	7169		NM_003289	ENSG00000198467	TPM2	AMCD1|CMYP23|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB	tropomyosin 2	protein-coding
138678	chr2	213034471	213034850	+	0	NA	intron (NM_001371277, intron 5 of 6)	Tigger1|DNA|TcMar-Tigger	-108324	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
29454	chr10	70461221	70461700	+	0	NA	Intergenic	L2b|LINE|L2	-13512	NM_001329906	4838		NM_018055	ENSG00000156574	NODAL	HTX5	nodal growth differentiation factor	protein-coding
196946	chr6	52635071	52635430	+	0	NA	Intergenic	Intergenic	-29151	NR_024405	730101		NR_024403	ENSG00000291006	LOC730101	-	uncharacterized LOC730101	ncRNA
233383	chr9	137525501	137526150	+	0	NA	intron (NM_001098537, intron 8 of 34)	LTR13_|LTR|ERVK	24577	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
228583	chr9	104863071	104863580	+	0	NA	intron (NM_005502, intron 5 of 49)	intron (NM_005502, intron 5 of 49)	64830	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
234650	chrX	20127521	20128080	+	0	NA	3' UTR (NM_001412, exon 7 of 7)	3' UTR (NM_001412, exon 7 of 7)	8613	NR_023358	100158262		NR_023358		SCARNA9L	-	small Cajal body-specific RNA 9 like	ncRNA
67502	chr14	70945671	70946030	+	0	NA	intron (NM_014982, intron 1 of 35)	intron (NM_014982, intron 1 of 35)	38391	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
124061	chr19	55596121	55596630	+	0	NA	intron (NM_032836, intron 2 of 2)	intron (NM_032836, intron 2 of 2)	3142	NM_032836	84922		NM_032836	ENSG00000179943	FIZ1	ZNF798	FLT3 interacting zinc finger 1	protein-coding
212278	chr7	123701521	123701800	+	0	NA	intron (NM_003941, intron 5 of 10)	intron (NM_003941, intron 5 of 10)	45794	NM_207163	442721		NM_207163	ENSG00000170807	LMOD2	C-LMOD|CLMOD|CMD2G	leiomodin 2	protein-coding
154402	chr22	35315821	35316530	+	0	NA	intron (NR_156428, intron 1 of 13)	intron (NR_156428, intron 1 of 13)	16281	NR_156428	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
35574	chr11	1689401	1689850	+	0	NA	Intergenic	(CCTGCC)n|Simple_repeat|Simple_repeat	-3996	NR_026642	100132464		NR_026642	ENSG00000205865	FAM99B	-	family with sequence similarity 99 member B	ncRNA
14271	chr1	143498301	143499950	+	0	NA	Intergenic	Intergenic	-74441	NR_027356	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
209644	chr7	77796551	77796650	+	0	NA	intron (NM_032936, intron 1 of 1)	intron (NM_032936, intron 1 of 1)	1834	NM_032936	85025		NM_032936	ENSG00000135211	TMEM60	C7orf35|DC32	transmembrane protein 60	protein-coding
11246	chr1	88983801	88984500	+	0	NA	intron (NM_019610, intron 1 of 1)	intron (NM_019610, intron 1 of 1)	8479	NM_001162536	494115		NM_019610	ENSG00000213516	RBMXL1	RBM1	RBMX like 1	protein-coding
72	chr1	287101	287300	+	0	NA	Intergenic	L1PA14|LINE|L1	-80603	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
79139	chr16	233101	233400	+	0	NA	Intergenic	AluY|SINE|Alu	-1296	NR_104317	83986		NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding
44529	chr11	107857921	107860030	+	0	NA	promoter-TSS (NM_017515)	promoter-TSS (NM_017515)	-188	NM_017515	54733		NM_017515	ENSG00000110660	SLC35F2	HSNOV1	solute carrier family 35 member F2	protein-coding
59362	chr13	24671001	24671600	+	0	NA	Intergenic	Intergenic	-9108	NM_001676	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
121885	chr19	48352051	48352450	+	0	NA	intron (NR_130317, intron 1 of 5)	AluY|SINE|Alu	11690	NM_001303538	55260		NM_018273	ENSG00000161558	TMEM143	-	transmembrane protein 143	protein-coding
148453	chr20	64009501	64010430	+	0	NA	intron (NM_012469, intron 9 of 20)	L1MC5|LINE|L1	-23762	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
145915	chr20	45998601	45999550	+	0	NA	Intergenic	MER74B|LTR|ERVL	-9833	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
54974	chr12	96314451	96315000	+	0	NA	intron (NM_002595, intron 3 of 16)	L2b|LINE|L2	59227	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
2363	chr1	9294451	9294700	+	0	NA	intron (NM_025106, intron 1 of 2)	intron (NM_025106, intron 1 of 2)	1681	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
160280	chr3	25901821	25902100	+	0	NA	Intergenic	Intergenic	-28265	NR_034055	285326		NR_034055	ENSG00000230891	LINC00692	-	long intergenic non-protein coding RNA 692	ncRNA
196690	chr6	44855121	44855380	+	0	NA	intron (NM_001350327, intron 9 of 9)	intron (NM_001350327, intron 9 of 9)	-303369	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
85699	chr16	56547421	56547900	+	0	NA	Intergenic	Intergenic	-17413	NM_032935	84560		NM_032935	ENSG00000102891	MT4	MT-4|MT-IV|MTIV	metallothionein 4	protein-coding
81691	chr16	11227871	11228030	+	0	NA	Intergenic	Intergenic	28232	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
99236	chr17	49687521	49688800	+	0	NA	Intergenic	Intergenic	-9997	NM_001007226	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
167052	chr3	126863551	126864450	+	0	NA	intron (NM_032343, intron 5 of 7)	intron (NM_032343, intron 5 of 7)	-124594	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
209743	chr7	87194121	87194800	+	0	NA	intron (NR_024550, intron 16 of 17)	intron (NR_024550, intron 16 of 17)	25272	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
128815	chr2	62775051	62775380	+	0	NA	intron (NM_001142616, intron 5 of 22)	intron (NM_001142616, intron 5 of 22)	68318	NM_001354217	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
116041	chr19	17203551	17204400	+	0	NA	intron (NM_004145, intron 30 of 39)	MIR|SINE|MIR	-11382	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
206540	chr7	35257921	35258250	+	0	NA	Intergenic	CpG	-3985	NM_001166220	57057		NM_020417	ENSG00000164532	TBX20	ASD4	T-box transcription factor 20	protein-coding
166799	chr3	122571971	122572130	+	0	NA	3' UTR (NM_138287, exon 5 of 5)	3' UTR (NM_138287, exon 5 of 5)	-5600	NM_001113523	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
65039	chr14	39182971	39183130	+	0	NA	3' UTR (NM_002687, exon 9 of 9)	3' UTR (NM_002687, exon 9 of 9)	7796	NM_002687	5411		NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding
61031	chr13	48188551	48188930	+	0	NA	Intergenic	Intergenic	-44466	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
180455	chr5	10636551	10637050	+	0	NA	intron (NM_001164440, intron 2 of 3)	intron (NM_001164440, intron 2 of 3)	72730	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
131562	chr2	96799621	96799880	+	0	NA	intron (NM_020184, intron 5 of 6)	intron (NM_020184, intron 5 of 6)	1472	NR_036074	100422928		NR_036074	ENSG00000264157	MIR3127	mir-3127	microRNA 3127	ncRNA
176397	chr4	88819871	88820030	+	0	NA	intron (NM_014883, intron 7 of 23)	intron (NM_014883, intron 7 of 23)	3411	NM_001265578	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
201778	chr6	149961551	149962050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2143	NM_001317089	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
113165	chr19	8386551	8386930	+	0	NA	intron (NR_038237, intron 1 of 2)	LTR12D|LTR|ERV1	2640	NR_049795	100847049		NR_049795	ENSG00000265390	MIR4999	mir-4999	microRNA 4999	ncRNA
231251	chr9	129990371	129991380	+	0	NA	intron (NM_001363755, intron 2 of 15)	L2a|LINE|L2	52314	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
74984	chr15	63895871	63896030	+	0	NA	Intergenic	Intergenic	-24931	NR_029944	494334		NR_029944	ENSG00000199156	MIR422A	MIRN422A	microRNA 422a	ncRNA
119649	chr19	40815501	40816130	+	0	NA	Intergenic	AluSz6|SINE|Alu	-4715	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
67198	chr14	68918451	68919150	+	0	NA	intron (NM_001130004, intron 3 of 21)	MIRb|SINE|MIR	60502	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
133886	chr2	130144361	130145270	+	0	NA	non-coding (NR_165309, exon 1 of 8)	non-coding (NR_165309, exon 1 of 8)	297	NM_207310	91409		NM_207310	ENSG00000152076	CCDC74B	-	coiled-coil domain containing 74B	protein-coding
46309	chr11	124953651	124954750	+	0	NA	promoter-TSS (NM_025004)	promoter-TSS (NM_025004)	-2	NM_025004	80071		NM_025004	ENSG00000149548	CCDC15	-	coiled-coil domain containing 15	protein-coding
158246	chr22	50301871	50302780	+	0	NA	promoter-TSS (NM_001376877)	promoter-TSS (NM_001376877)	-656	NM_001376877	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
31067	chr10	88997901	88998100	+	0	NA	intron (NR_135314, intron 1 of 8)	intron (NR_135314, intron 1 of 8)	-5025	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
114981	chr19	14033701	14033900	+	0	NA	intron (NM_004843, intron 2 of 13)	AluSg|SINE|Alu	2038	NM_004843	9466		NM_004843	ENSG00000104998	IL27RA	CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1	interleukin 27 receptor subunit alpha	protein-coding
29045	chr10	67767001	67767830	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	70764	NM_201262	56521		NM_021800	ENSG00000108176	DNAJC12	HPANBH4|JDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding
13159	chr1	111741571	111741930	+	0	NA	intron (NR_038952, intron 1 of 1)	AluSx|SINE|Alu	1909	NR_038952	100506343		NR_038951	ENSG00000227811	INKA2-AS1	FAM212B-AS1	INKA2 antisense RNA 1	ncRNA
48728	chr12	10708901	10709450	+	0	NA	intron (NM_001145426, intron 5 of 8)	intron (NM_001145426, intron 5 of 8)	14148	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
168735	chr3	150787731	150788350	+	0	NA	Intergenic	Intergenic	-24871	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
61540	chr13	60394771	60395130	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-1507	NM_001146071	81550		NM_030794	ENSG00000083544	TDRD3	-	tudor domain containing 3	protein-coding
207178	chr7	43611351	43612300	+	0	NA	intron (NR_135582, intron 6 of 6)	intron (NR_135582, intron 6 of 6)	28717	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
111051	chr19	3103501	3104880	+	0	NA	intron (NM_002067, intron 1 of 6)	intron (NM_002067, intron 1 of 6)	9828	NM_002067	2767		NM_002067	ENSG00000088256	GNA11	FBH|FBH2|FHH2|GNA-11|HG1K|HHC2|HYPOC2	G protein subunit alpha 11	protein-coding
201550	chr6	149216321	149217080	+	0	NA	Intergenic	Intergenic	-1224	NR_125861	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
121004	chr19	45774701	45775100	+	0	NA	intron (NM_001081560, intron 9 of 14)	intron (NM_001081560, intron 9 of 14)	4719	NM_001288765	1760		NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	DM1 protein kinase	protein-coding
67891	chr14	74479151	74479250	+	0	NA	TTS (NM_001375440)	TTS (NM_001375440)	1004	NR_039858	100616211		NR_039858	ENSG00000283944	MIR4709	mir-4709	microRNA 4709	ncRNA
67405	chr14	69797671	69797830	+	0	NA	promoter-TSS (NM_003049)	promoter-TSS (NM_003049)	-509	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
124684	chr2	3483071	3483570	+	0	NA	Intergenic	Intergenic	34427	NM_001306077	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
213319	chr7	135169801	135171300	+	0	NA	promoter-TSS (NM_001243752)	promoter-TSS (NM_001243752)	-26	NM_001243752	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
100153	chr17	58533271	58533430	+	0	NA	intron (NM_001368771, intron 2 of 13)	MIR3|SINE|MIR	-1266	NM_080416	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
235620	chrX	48025671	48026050	+	0	NA	Intergenic	LTR55|LTR|ERVL?	18119	NM_001079900	729201		NM_001079900	ENSG00000171478	SPACA5B	LYZL5B	sperm acrosome associated 5B	protein-coding
117447	chr19	19666801	19667000	+	0	NA	Intergenic	AluSg|SINE|Alu	-1253	NM_001300949	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
216377	chr8	17864571	17864800	+	0	NA	exon (NM_201552, exon 9 of 9)	exon (NM_201552, exon 9 of 9)	30719	NM_201553	2267		NM_004467	ENSG00000104760	FGL1	HFREP1|HP-041|HPS|LFIRE-1|LFIRE1	fibrinogen like 1	protein-coding
189850	chr5	177115321	177115780	+	0	NA	Intergenic	AluSz|SINE|Alu	-17529	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
236241	chrX	65738271	65738430	+	0	NA	intron (NM_002444, intron 10 of 12)	intron (NM_002444, intron 10 of 12)	70696	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
2881	chr1	11635871	11636030	+	0	NA	Intergenic	Intergenic	-18457	NM_183412	93611		NM_033182	ENSG00000132879	FBXO44	FBG3|FBX30|FBX6A|Fbx44|Fbxo6a	F-box protein 44	protein-coding
121331	chr19	46780001	46780400	+	0	NA	intron (NM_005628, intron 4 of 7)	AluJb|SINE|Alu	4614	NM_001145145	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
135126	chr2	157427271	157427430	+	0	NA	intron (NM_004288, intron 6 of 7)	intron (NM_004288, intron 6 of 7)	16739	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
221207	chr8	120803751	120804250	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	8046	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
184545	chr5	102752101	102752850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2308	NM_001319943	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
7224	chr1	32321001	32321350	+	0	NA	intron (NM_004964, intron 3 of 13)	AluY|SINE|Alu	15058	NR_052852	65108		NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding
194086	chr6	31893301	31894100	+	0	NA	intron (NM_001318833, intron 3 of 27).6	L1MB3|LINE|L1	3289	NM_001318833	10919		NM_006709	ENSG00000204371	EHMT2	BAT8|C6orf30|G9A|GAT8|KMT1C|NG36	euchromatic histone lysine methyltransferase 2	protein-coding
70084	chr14	100163851	100164350	+	0	NA	Intergenic	AluJb|SINE|Alu	-4455	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
162160	chr3	46975821	46977330	+	0	NA	promoter-TSS (NR_102269)	promoter-TSS (NR_102269)	-74	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
174130	chr4	36224971	36225130	+	0	NA	intron (NR_146894, intron 2 of 32)	intron (NR_146894, intron 2 of 32)	18889	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
191606	chr6	12101871	12102030	+	0	NA	intron (NM_002114, intron 3 of 8)	L1M4b|LINE|L1	89638	NM_002114	3096		NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	HIVEP zinc finger 1	protein-coding
94693	chr17	30663571	30664000	+	0	NA	Intergenic	Intergenic	39467	NR_033420	6459		NR_033420		SH3GL1P2	CNSA-P2|SH3GLP2	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2	pseudo
148025	chr20	63167321	63167700	+	0	NA	Intergenic	Intergenic	-10990	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
14470	chr1	144482871	144483280	+	0	NA	Intergenic	Intergenic	-21406	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
152412	chr22	20565351	20565730	+	0	NA	intron (NM_001003891, intron 6 of 17)	intron (NM_001003891, intron 6 of 17)	57493	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
112492	chr19	6432101	6432500	+	0	NA	intron (NM_173637, intron 1 of 6)	intron (NM_173637, intron 1 of 6)	1463	NR_135612	284427		NM_173637	ENSG00000181240	SLC25A41	APC4|SCaMC-3L	solute carrier family 25 member 41	protein-coding
190503	chr5	180390771	180391330	+	0	NA	Intergenic	Intergenic	-37714	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
66652	chr14	63876971	63877130	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	24046	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
78755	chr15	99051971	99052330	+	0	NA	Intergenic	AluJr|SINE|Alu	37446	NR_126487	104564224		NR_126487		LUNAR1	-	leukemia-associated non-coding IGF1R activator RNA 1	ncRNA
157541	chr22	45440771	45441480	+	0	NA	Intergenic	LTR2B|LTR|ERV1	27432	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
232910	chr9	136860451	136861380	+	0	NA	TTS (NM_206920)	TTS (NM_206920)	5393	NM_001281297	8721		NM_003792	ENSG00000107223	EDF1	CFAP280|EDF-1|MBF1	endothelial differentiation related factor 1	protein-coding
237355	chrX	118716271	118716830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-11056	NM_001560	3597		NM_001560	ENSG00000131724	IL13RA1	CD213A1|CT19|IL-13Ra|NR4	interleukin 13 receptor subunit alpha 1	protein-coding
147540	chr20	59519301	59519680	+	0	NA	Intergenic	Intergenic	-58019	NM_001199505	116154		NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
123476	chr19	54168051	54169130	+	0	NA	exon (NM_001145303, exon 4 of 15).6	exon (NM_001145303, exon 4 of 15).6	4570	NM_001145303	147798		NM_144686	ENSG00000167608	TMC4	-	transmembrane channel like 4	protein-coding
132078	chr2	101288151	101288250	+	0	NA	intron (NM_173647, intron 4 of 6)	intron (NM_173647, intron 4 of 6)	-15151	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
191956	chr6	16137101	16137680	+	0	NA	intron (NM_013262, intron 2 of 6)	intron (NM_013262, intron 2 of 6)	-4166	NR_039782	100616269		NR_039782	ENSG00000263712	MIR4639	-	microRNA 4639	ncRNA
180023	chr5	1046501	1046700	+	0	NA	Intergenic	Intergenic	16374	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
124783	chr2	7435201	7435400	+	0	NA	intron (NR_038432, intron 4 of 5)	L1ME3C|LINE|L1	14039	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
48183	chr12	8020271	8020430	+	0	NA	Intergenic	AluSg|SINE|Alu	-12366	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
4161	chr1	19374221	19374780	+	0	NA	intron (NM_001313932, intron 4 of 4)	intron (NM_001313932, intron 4 of 4)	62174	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
182325	chr5	59037571	59038250	+	0	NA	intron (NM_001364603, intron 7 of 15)	intron (NM_001364603, intron 7 of 15)	1566	NM_001197222	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
52384	chr12	55719801	55720000	+	0	NA	promoter-TSS (NM_002905)	promoter-TSS (NM_002905)	-493	NM_002905	5959		NM_002905	ENSG00000135437	RDH5	9cRDH|HSD17B9|RDH1|SDR9C5	retinol dehydrogenase 5	protein-coding
149153	chr21	17801501	17802030	+	0	NA	intron (NM_017447, intron 2 of 4)	L1PA7|LINE|L1	-9256	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
95407	chr17	36068021	36068280	+	0	NA	intron (NM_002988, intron 1 of 2).3	Tigger3a|DNA|TcMar-Tigger	3878	NM_002988	6362		NM_002988	ENSG00000275385	CCL18	AMAC-1|AMAC1|CKb7|DC-CK1|DCCK1|MIP-4|PARC|SCYA18	C-C motif chemokine ligand 18	protein-coding
19874	chr1	183567521	183567930	+	0	NA	intron (NM_001127651, intron 8 of 15)	intron (NM_001127651, intron 8 of 15)	22734	NM_000433	4688		NM_000433	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
172298	chr4	1572721	1573200	+	0	NA	Intergenic	Intergenic	111031	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
89829	chr16	89578721	89579580	+	0	NA	intron (NM_014427, intron 3 of 16)	AluSx3|SINE|Alu	3392	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
104662	chr17	81485521	81486250	+	0	NA	Intergenic	AluSx1|SINE|Alu	26914	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
229921	chr9	126623851	126624550	+	0	NA	intron (NM_001174147, intron 2 of 7)	CpG	10272	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
27782	chr10	35416821	35417080	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	80076	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
51072	chr12	49903401	49904550	+	0	NA	promoter-TSS (NM_012306)	promoter-TSS (NM_012306)	-75	NM_012306	23017		NM_012306	ENSG00000135472	FAIM2	LFG|LFG2|NGP35|NMP35|TMBIM2	Fas apoptotic inhibitory molecule 2	protein-coding
228231	chr9	97916771	97917130	+	0	NA	intron (NM_001371657, intron 1 of 5)	AluSx1|SINE|Alu	5231	NM_001371659	51531		NM_016481	ENSG00000136932	TRMO	C9orf156|HSPC219|NAP1	tRNA methyltransferase O	protein-coding
196842	chr6	47328351	47328650	+	0	NA	Intergenic	L1PA6|LINE|L1	-18595	NM_014452	27242		NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
184827	chr5	111309221	111309830	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	85141	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
202232	chr6	156825301	156825850	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-45844	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
222360	chr8	133566971	133567500	+	0	NA	intron (NM_173344, intron 1 of 9)	L2b|LINE|L2	4652	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
186151	chr5	134171121	134171850	+	0	NA	intron (NM_170679, intron 2 of 5)	intron (NM_170679, intron 2 of 5)	5465	NM_170679	6500		NM_006930	ENSG00000113558	SKP1	EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A	S-phase kinase associated protein 1	protein-coding
163756	chr3	52363701	52363900	+	0	NA	intron (NM_015512, intron 32 of 77)	MLT1K|LTR|ERVL-MaLR	46208	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
219624	chr8	80125701	80125910	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	-44974	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
75614	chr15	67125601	67125800	+	0	NA	promoter-TSS (NM_001145102)	promoter-TSS (NM_001145102)	-16	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
22329	chr1	214278451	214279150	+	0	NA	Intergenic	L2c|LINE|L2	-2359	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
113289	chr19	8550801	8551200	+	0	NA	intron (NM_012335, intron 8 of 27)	AluSx|SINE|Alu	26442	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
63008	chr13	112606071	112606700	+	0	NA	Intergenic	Intergenic	-18200	NM_001286279	10426		NM_006322	ENSG00000126216	TUBGCP3	104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex component 3	protein-coding
154745	chr22	36481171	36482600	+	0	NA	promoter-TSS (NM_012473)	promoter-TSS (NM_012473)	-245	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
180329	chr5	6571021	6571800	+	0	NA	Intergenic	Intergenic	-10726	NR_024423	255167		NR_024423	ENSG00000250056	LINC01018	SRHC	long intergenic non-protein coding RNA 1018	ncRNA
187741	chr5	143601971	143602530	+	0	NA	Intergenic	Intergenic	-77610	NR_049829	100846991		NR_049829	ENSG00000266478	MIR5197	-	microRNA 5197	ncRNA
172266	chr4	1410301	1411080	+	0	NA	Intergenic	CpG	-4248	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
177584	chr4	120064171	120064330	+	0	NA	intron (NM_002358, intron 2 of 4)	intron (NM_002358, intron 2 of 4)	2598	NM_002358	4085		NM_002358	ENSG00000164109	MAD2L1	HSMAD2|MAD2	mitotic arrest deficient 2 like 1	protein-coding
75775	chr15	68782771	68783130	+	0	NA	intron (NM_006305, intron 5 of 6)	(CCT)n|Simple_repeat|Simple_repeat	18975	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
132934	chr2	111442551	111443700	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	52036	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
147273	chr20	57481571	57482030	+	0	NA	Intergenic	Intergenic	43067	NM_001269052	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
164236	chr3	56995321	56995850	+	0	NA	intron (NM_001377411, intron 1 of 11)	intron (NM_001377411, intron 1 of 11)	55545	NR_046572	100874200		NR_046572	ENSG00000240198	ARHGEF3-AS1	-	ARHGEF3 antisense RNA 1	ncRNA
227811	chr9	93231501	93231700	+	0	NA	intron (NM_001282394, intron 3 of 29)	intron (NM_001282394, intron 3 of 29)	46670	NM_006648	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
27991	chr10	43106671	43107180	+	0	NA	intron (NM_020975, intron 5 of 19)	intron (NM_020975, intron 5 of 19)	2193	NM_001355216	5979		NM_020630	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1	ret proto-oncogene	protein-coding
97786	chr17	44709871	44710030	+	0	NA	intron (NR_036623, intron 2 of 11)	AluSc8|SINE|Alu	1285	NR_148207	80174		NM_025104	ENSG00000161692	DBF4B	ASKL1|CHIFB|DRF1|ZDBF1B	DBF4B-CDC7 kinase regulatory subunit	protein-coding
211732	chr7	107127571	107127930	+	0	NA	intron (NM_002736, intron 3 of 10)	intron (NM_002736, intron 3 of 10)	-41211	NM_001244262	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
93584	chr17	19117101	19117300	+	0	NA	Intergenic	L1MCa|LINE|L1	-4564	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
156853	chr22	42022571	42022730	+	0	NA	intron (NM_152613, intron 5 of 5)	intron (NM_152613, intron 5 of 5)	23862	NM_152613	164684		NM_152613	ENSG00000183066	WBP2NL	GRAMD7|PAWP	WBP2 N-terminal like	protein-coding
68497	chr14	88127721	88128000	+	0	NA	Intergenic	L1PA5|LINE|L1	-101548	NR_110121	101928791		NR_110121		LINC01147	-	long intergenic non-protein coding RNA 1147	ncRNA
92770	chr17	15589251	15590680	+	0	NA	intron (NM_006382, intron 11 of 11)	intron (NM_006382, intron 11 of 11)	-26334	NM_145301	201158		NM_145301	ENSG00000175106	TVP23C	FAM18B2	trans-golgi network vesicle protein 23 homolog C	protein-coding
67356	chr14	69703071	69703430	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	-63892	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
88381	chr16	84607551	84608830	+	0	NA	intron (NM_021149, intron 2 of 3)	L2a|LINE|L2	9888	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
57219	chr12	121514501	121515930	+	0	NA	intron (NM_001005366, intron 9 of 22)	intron (NM_001005366, intron 9 of 22)	65031	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
34491	chr10	132541121	132542150	+	0	NA	intron (NM_005539, intron 1 of 15)	Charlie1|DNA|hAT-Charlie	3848	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
34805	chr11	277321	277780	+	0	NA	promoter-TSS (NM_001276700)	promoter-TSS (NM_001276700)	-857	NM_001276700	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
6891	chr1	31434021	31434480	+	0	NA	3' UTR (NM_001199038, exon 11 of 11)	3' UTR (NM_001199038, exon 11 of 11)	20437	NM_018565	347735		NM_018565	ENSG00000168528	SERINC2	FKSG84|PRO0899|TDE2|TDE2L	serine incorporator 2	protein-coding
227536	chr9	91711751	91712360	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-75710	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
43530	chr11	82750701	82751100	+	0	NA	Intergenic	Intergenic	-17036	NM_175885	220382		NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
209258	chr7	75891421	75891880	+	0	NA	Intergenic	AluSx1|SINE|Alu	12616	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
82549	chr16	18492451	18492800	+	0	NA	Intergenic	L2a|LINE|L2	1951	NR_036140	100422960		NR_036140	ENSG00000284305	MIR3179-1	-	microRNA 3179-1	ncRNA
213013	chr7	131015421	131016080	+	0	NA	intron (NR_109850, intron 3 of 5)	MLT1A|LTR|ERVL-MaLR	91280	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
40661	chr11	64745001	64747200	+	0	NA	promoter-TSS (NM_153819)	promoter-TSS (NM_153819)	-644	NM_153819	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
133507	chr2	119982571	119982730	+	0	NA	3' UTR (NM_002830, exon 27 of 27)	3' UTR (NM_002830, exon 27 of 27)	-30427	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
128307	chr2	54640171	54640730	+	0	NA	intron (NM_178313, intron 17 of 30)	intron (NM_178313, intron 17 of 30)	82056	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
64626	chr14	31026101	31027750	+	0	NA	promoter-TSS (NM_001083893)	promoter-TSS (NM_001083893)	282	NM_001254728	11154		NM_007077	ENSG00000100478	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor related protein complex 4 subunit sigma 1	protein-coding
203509	chr7	640301	640780	+	0	NA	intron (NM_001164759, intron 4 of 10)	AluSq2|SINE|Alu	37142	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
168869	chr3	152292771	152293600	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-5829	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
4810	chr1	23598671	23599180	+	0	NA	Intergenic	Intergenic	-28409	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
219723	chr8	81026421	81027200	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	85258	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
38235	chr11	36460101	36460880	+	0	NA	intron (NM_001160167, intron 8 of 8)	intron (NM_001160167, intron 8 of 8)	49782	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
106021	chr18	8124671	8125030	+	0	NA	intron (NM_001378144, intron 10 of 27)	intron (NM_001378144, intron 10 of 27)	177975	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
216520	chr8	20492871	20494150	+	0	NA	Intergenic	Intergenic	121416	NR_145737	109616983		NR_145737		SNORD3F	RNU3P2|SNORD3P2|U3|U3.2	small nucleolar RNA, C/D box 3F	snoRNA
235402	chrX	45232171	45232400	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-31409	NM_176819	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
178490	chr4	150079021	150079350	+	0	NA	exon (NM_001040260, exon 1 of 16)	exon (NM_001040260, exon 1 of 16)	740	NR_036614	166614		NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
84907	chr16	31215301	31216290	+	0	NA	TTS (NM_152901)	TTS (NM_152901)	1340	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
222736	chr8	141398871	141399430	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	7129	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
145901	chr20	45964651	45964750	+	0	NA	intron (NM_022095, intron 7 of 27)	L1ME3A|LINE|L1	7503	NM_022095	63925		NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding
92250	chr17	7930571	7930730	+	0	NA	non-coding (NR_030684, exon 3 of 3)	non-coding (NR_030684, exon 3 of 3)	-1215	NM_004732	9196		NM_004732	ENSG00000170049	KCNAB3	AKR6A9|KCNA3.1B|KCNA3B|KV-BETA-3	potassium voltage-gated channel subfamily A regulatory beta subunit 3	protein-coding
123449	chr19	54140571	54141530	+	0	NA	intron (NM_014516, intron 1 of 17).8	intron (NM_014516, intron 1 of 17).8	3288	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
42482	chr11	69916771	69917330	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-68857	NM_001378092	55107		NM_018043	ENSG00000131620	ANO1	DOG1|INDMS|MYMY7|ORAOV2|TAOS2|TMEM16A	anoctamin 1	protein-coding
155650	chr22	38989201	38990250	+	0	NA	intron (NM_001270411, intron 5 of 7)	intron (NM_001270411, intron 5 of 7)	7378	NM_001270411	9582		NM_004900	ENSG00000179750	APOBEC3B	A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2	apolipoprotein B mRNA editing enzyme catalytic subunit 3B	protein-coding
64448	chr14	24230321	24231000	+	0	NA	intron (NR_137631, intron 1 of 6)	AluSq2|SINE|Alu	1707	NM_006156	4738		NM_006156	ENSG00000129559	NEDD8	NEDD-8	NEDD8 ubiquitin like modifier	protein-coding
227317	chr9	89433721	89434380	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	45840	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
166508	chr3	114325371	114326450	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-9341	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
89595	chr16	89285671	89285830	+	0	NA	TTS (NR_045839)	TTS (NR_045839)	-10378	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
78622	chr15	94233471	94233700	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	2024	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
91527	chr17	4981771	4981930	+	0	NA	intron (NM_001171168, intron 5 of 21)	intron (NM_001171168, intron 5 of 21)	5611	NM_001171167	23125		NM_015099	ENSG00000108509	CAMTA2	-	calmodulin binding transcription activator 2	protein-coding
66725	chr14	64459621	64460030	+	0	NA	exon (NM_001364837, exon 27 of 27)	exon (NM_001364837, exon 27 of 27)	-5674	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
128801	chr2	62334701	62334900	+	0	NA	Intergenic	L2a|LINE|L2	119279	NM_001319075	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
102802	chr17	76399171	76399650	+	0	NA	intron (NM_022066, intron 9 of 17)	intron (NM_022066, intron 9 of 17)	14132	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
118854	chr19	38645771	38645930	+	0	NA	Intergenic	AluSg|SINE|Alu	-1799	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
112985	chr19	7873971	7875100	+	0	NA	promoter-TSS (NM_001190467)	promoter-TSS (NM_001190467)	-145	NM_001190467	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
14063	chr1	120793171	120793330	+	0	NA	non-coding (NR_157049, exon 4 of 5)	non-coding (NR_157049, exon 4 of 5)	-12306	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
21630	chr1	206591751	206591850	+	0	NA	exon (NM_006893, exon 15 of 15)	exon (NM_006893, exon 15 of 15)	20665	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
189782	chr5	176680121	176680380	+	0	NA	Intergenic	CpG	32766	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
220866	chr8	103408421	103409200	+	0	NA	intron (NM_030780, intron 1 of 6)	L2|LINE|L2	6297	NM_030780	81034		NM_030780	ENSG00000164933	SLC25A32	GLYB|MFT|MFTC|RREI	solute carrier family 25 member 32	protein-coding
145651	chr20	44907801	44908500	+	0	NA	3' UTR (NM_003404, exon 7 of 7)	3' UTR (NM_003404, exon 7 of 7)	-1910	NM_001372179	80336		NM_001124756	ENSG00000101104	PABPC1L	C20orf119|EPAB|PABPC1L1|dJ1069P2.3	poly(A) binding protein cytoplasmic 1 like	protein-coding
45228	chr11	117948101	117948600	+	0	NA	Intergenic	AluJb|SINE|Alu	-18897	NM_001206790	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
26817	chr10	23694571	23694730	+	0	NA	promoter-TSS (NM_001098500)	promoter-TSS (NM_001098500)	-77	NM_001098500	56243		NM_019590	ENSG00000120549	KIAA1217	ETL4|SKT	KIAA1217	protein-coding
172683	chr4	2747341	2747850	+	0	NA	intron (NM_001292016, intron 2 of 4)	intron (NM_001292016, intron 2 of 4)	8741	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
155900	chr22	39540601	39541200	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-8152	NM_194326	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
89560	chr16	89249821	89250080	+	0	NA	Intergenic	L1MB4|LINE|L1	32247	NM_182531	197320		NM_182531	ENSG00000170100	ZNF778	-	zinc finger protein 778	protein-coding
178761	chr4	153271921	153272180	+	0	NA	intron (NM_001375523, intron 2 of 11)	intron (NM_001375523, intron 2 of 11)	14671	NM_001351054	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
97053	chr17	42348501	42348700	+	0	NA	intron (NM_001369516, intron 1 of 23)	intron (NM_001369516, intron 1 of 23)	39842	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
40879	chr11	65115521	65115850	+	0	NA	TTS (NM_014205)	TTS (NM_014205)	2016	NM_014205	741		NM_014205	ENSG00000174276	ZNHIT2	C11orf5|FON	zinc finger HIT-type containing 2	protein-coding
80007	chr16	1917271	1918030	+	0	NA	intron (NM_001009606, intron 1 of 1)	intron (NM_001009606, intron 1 of 1)	765	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
157325	chr22	44623701	44624380	+	0	NA	intron (NR_044991, intron 1 of 4)	intron (NR_044991, intron 1 of 4)	1379	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
98884	chr17	48564101	48564700	+	0	NA	intron (NM_001384750, intron 1 of 3)	CpG	10048	NM_002146	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
26034	chr10	12355371	12355530	+	0	NA	intron (NM_153498, intron 1 of 10)	(GT)n|Simple_repeat|Simple_repeat	5903	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
144777	chr20	36626871	36627230	+	0	NA	intron (NM_175077, intron 5 of 7)	L2b|LINE|L2	19146	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
83112	chr16	22488021	22488950	+	0	NA	intron (NR_027154, intron 25 of 28)	intron (NR_027154, intron 25 of 28)	-15964	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
44200	chr11	96279471	96279950	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-61728	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
160015	chr3	18399401	18399800	+	0	NA	intron (NM_001322873, intron 5 of 10)	intron (NM_001322873, intron 5 of 10)	25739	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
11578	chr1	91541801	91542400	+	0	NA	Intergenic	Intergenic	40992	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
103035	chr17	77098601	77099900	+	0	NA	intron (NM_001204410, intron 3 of 18)	intron (NM_001204410, intron 3 of 18)	9833	NR_106997	102466864		NR_106997	ENSG00000284250	MIR6516	hsa-mir-6516	microRNA 6516	ncRNA
128665	chr2	61456871	61457230	+	0	NA	intron (NM_014709, intron 1 of 79)	AluJb|SINE|Alu	14037	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
121468	chr19	47079151	47080150	+	0	NA	intron (NM_015168, intron 11 of 14)	AluSx3|SINE|Alu	-31026	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
225799	chr9	37511721	37511980	+	0	NA	3' UTR (NM_012166, exon 11 of 11)	3' UTR (NM_012166, exon 11 of 11)	25902	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
162313	chr3	47423921	47424180	+	0	NA	intron (NM_001320044, intron 5 of 19)	intron (NM_001320044, intron 5 of 19)	43029	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
23743	chr1	232596951	232597280	+	0	NA	intron (NM_001377488, intron 1 of 21)	intron (NM_001377488, intron 1 of 21)	33018	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
115428	chr19	15308921	15309400	+	0	NA	intron (NM_001379291, intron 1 of 19)	AluY|SINE|Alu	23379	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
22127	chr1	211828701	211829080	+	0	NA	promoter-TSS (NR_135818)	promoter-TSS (NR_135818)	-747	NR_135818	102723727		NR_135818	ENSG00000229258	LPGAT1-AS1	-	LPGAT1 antisense RNA 1	ncRNA
76649	chr15	75638021	75638580	+	0	NA	TTS (NM_018285)	TTS (NM_018285)	1924	NM_018285	55272		NM_018285	ENSG00000177971	IMP3	BRMS2|C15orf12|MRPS4	IMP U3 small nucleolar ribonucleoprotein 3	protein-coding
184321	chr5	96928901	96929480	+	0	NA	Intergenic	MER50|LTR|ERV1	-6890	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
10963	chr1	84213971	84214530	+	0	NA	exon (NM_001375560, exon 11 of 12)	exon (NM_001375560, exon 11 of 12)	32618	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
187412	chr5	141959671	141960030	+	0	NA	Intergenic	MIRb|SINE|MIR	-1648	NM_016580	51294		NM_016580	ENSG00000113555	PCDH12	DMJDS1|VE-cadherin-2|VECAD2	protocadherin 12	protein-coding
60589	chr13	41960171	41962030	+	0	NA	promoter-TSS (NR_039974)	promoter-TSS (NR_039974)	9	NM_015058	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
172784	chr4	2942001	2943280	+	0	NA	intron (NM_001291978, intron 13 of 17)	intron (NM_001291978, intron 13 of 17)	7094	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
39719	chr11	61769621	61770080	+	0	NA	intron (NM_013279, intron 4 of 25)	intron (NM_013279, intron 4 of 25)	-12186	NR_026882	26070		NR_026882	ENSG00000124915	MYRF-AS1	DKFZP434K028	MYRF antisense RNA 1	ncRNA
182541	chr5	65701701	65701900	+	0	NA	intron (NM_019072, intron 5 of 10)	AluY|SINE|Alu	20309	NM_019072	54557		NM_019072	ENSG00000197860	SGTB	SGT2	small glutamine rich tetratricopeptide repeat co-chaperone beta	protein-coding
49787	chr12	31899251	31899350	+	0	NA	Intergenic	Intergenic	-12097	NR_135029	105369723		NR_135029	ENSG00000255760	LINC02422	-	long intergenic non-protein coding RNA 2422	ncRNA
48830	chr12	12347951	12348050	+	0	NA	intron (NM_001363613, intron 1 of 4)	AluSx1|SINE|Alu	2242	NM_001363613	54682		NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
75255	chr15	64911471	64912580	+	0	NA	intron (NM_182703, intron 1 of 14)	CpG	123	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
219170	chr8	66520971	66521130	+	0	NA	Intergenic	MamRep38|DNA|hAT	27484	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
9722	chr1	53136771	53137200	+	0	NA	intron (NM_001287595, intron 1 of 10)	HAL1|LINE|L1	5653	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
175222	chr4	56906551	56908200	+	0	NA	promoter-TSS (NM_005612)	promoter-TSS (NM_005612)	-525	NM_005612	5978		NM_005612	ENSG00000084093	REST	DFNA27|GINGF5|HGF5|NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
158279	chr22	50346521	50346980	+	0	NA	intron (NM_001351641, intron 1 of 23)	intron (NM_001351641, intron 1 of 23)	3423	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
110548	chr19	2099401	2099600	+	0	NA	TTS (NM_001031735)	TTS (NM_001031735)	2585	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
119676	chr19	40878471	40878630	+	0	NA	intron (NM_030589, intron 4 of 7)	AluSx|SINE|Alu	4202	NM_000764	1549		NM_000764	ENSG00000198077	CYP2A7	CPA7|CPAD|CYP2A|CYPIIA7|P450-IIA4	cytochrome P450 family 2 subfamily A member 7	protein-coding
194534	chr6	33309871	33310030	+	0	NA	intron (NM_172209, intron 2 of 6).2	AluSp|SINE|Alu	4128	NM_003190	6892		NM_003190	ENSG00000231925	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein	protein-coding
78275	chr15	90871001	90872200	+	0	NA	promoter-TSS (NR_168464)	promoter-TSS (NR_168464)	60	NR_168464	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
197180	chr6	63529521	63529780	+	0	NA	intron (NM_001385254, intron 2 of 6)	intron (NM_001385254, intron 2 of 6)	7904	NM_001385257	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
127287	chr2	38735641	38736280	+	0	NA	Intergenic	LTR42|LTR|ERVL	15401	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
152741	chr22	21695471	21695630	+	0	NA	3' UTR (NM_014337, exon 20 of 20)	3' UTR (NM_014337, exon 20 of 20)	29538	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
38313	chr11	43943301	43943750	+	0	NA	3' UTR (NM_001145033, exon 1 of 1)	3' UTR (NM_001145033, exon 1 of 1)	888	NM_001145033	387763		NM_001145033	ENSG00000187479	C11orf96	AG2	chromosome 11 open reading frame 96	protein-coding
84336	chr16	30188251	30188430	+	0	NA	promoter-TSS (NR_002454).2	promoter-TSS (NR_002454).2	-344	NR_002454	606724		NR_002454		LOC606724	-	coronin 1A pseudogene	pseudo
162019	chr3	46496971	46497130	+	0	NA	promoter-TSS (NM_031440)	promoter-TSS (NM_031440)	-926	NM_031440	83597		NM_031440	ENSG00000163825	RTP3	LTM1|TMEM7|Z3CXXC3	receptor transporter protein 3	protein-coding
177036	chr4	107693171	107693330	+	0	NA	intron (NM_005443, intron 3 of 11)	intron (NM_005443, intron 3 of 11)	26984	NM_005443	9061		NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
222113	chr8	131907901	131908500	+	0	NA	intron (NM_001323555, intron 1 of 22)	AluSc8|SINE|Alu	4107	NM_015137	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
175197	chr4	56575871	56576100	+	0	NA	intron (NM_001256475, intron 5 of 8)	intron (NM_001256475, intron 5 of 8)	45379	NM_001256475	100506564		NM_001256475	ENSG00000249693	SPMAP2L	THEGL	sperm microtubule associated protein 2 like	protein-coding
12014	chr1	96718871	96719030	+	0	NA	Intergenic	AluSc5|SINE|Alu	-2655	NM_001300988	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
56846	chr12	120250001	120250850	+	0	NA	promoter-TSS (NM_025157)	promoter-TSS (NM_025157)	-262	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
121496	chr19	47149171	47149880	+	0	NA	intron (NR_027280, intron 2 of 8)	intron (NR_027280, intron 2 of 8)	18690	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
210082	chr7	96852051	96852450	+	0	NA	Intergenic	L1HS|LINE|L1	-142359	NM_006304	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
223424	chr8	143949371	143949900	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	1291	NM_201380	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
2351	chr1	9275351	9275870	+	0	NA	Intergenic	Intergenic	-17284	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
188126	chr5	150391401	150392050	+	0	NA	intron (NM_001371623, intron 20 of 26)	MIRb|SINE|MIR	21031	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
207062	chr7	39742071	39742580	+	0	NA	intron (NR_026999, intron 1 of 11)	intron (NR_026999, intron 1 of 11)	8757	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
217250	chr8	27299871	27300230	+	0	NA	intron (NM_171982, intron 1 of 5)	MLT1F2|LTR|ERVL-MaLR	11222	NM_001362813	23087		NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
142740	chr20	10426951	10427450	+	0	NA	intron (NM_170784, intron 1 of 5)	intron (NM_170784, intron 1 of 5)	4725	NM_018848	8195		NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	MKKS centrosomal shuttling protein	protein-coding
145378	chr20	41179051	41179750	+	0	NA	3' UTR (NM_015035, exon 4 of 4)	3' UTR (NM_015035, exon 4 of 4)	10377	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
167117	chr3	127671671	127675180	+	0	NA	TTS (NM_015720)	TTS (NM_015720)	473	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
37141	chr11	13450871	13451230	+	0	NA	intron (NM_032320, intron 1 of 8)	L1M4a1|LINE|L1	-10771	NM_001297742	84280		NM_032320	ENSG00000148925	BTBD10	GMRP-1|GMRP1	BTB domain containing 10	protein-coding
159582	chr3	15061401	15062100	+	0	NA	intron (NR_135246, intron 1 of 4)	SVA_D|Retroposon|SVA	3565	NR_135247	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
35735	chr11	2089221	2089980	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	44609	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
63173	chr13	113723871	113724280	+	0	NA	intron (NM_002929, intron 4 of 6)	intron (NM_002929, intron 4 of 6)	27014	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
66917	chr14	65335251	65335550	+	0	NA	promoter-TSS (NR_039857)	promoter-TSS (NR_039857)	-217	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
14609	chr1	145287051	145288130	+	0	NA	Intergenic	CpG	6474	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
6649	chr1	28972471	28972630	+	0	NA	intron (NM_001376013, intron 1 of 20)	intron (NM_001376013, intron 1 of 20)	57974	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
235174	chrX	41253021	41253950	+	0	NA	Intergenic	Intergenic	-22254	NR_135616	105373185		NR_135616	ENSG00000223714	LINC02601	-	long intergenic non-protein coding RNA 2601	ncRNA
110989	chr19	3031151	3031900	+	0	NA	intron (NM_001144761, intron 2 of 19)	AluJo|SINE|Alu	-1911	NM_001144762	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
220898	chr8	106269571	106270640	+	0	NA	promoter-TSS (NM_001198533)	promoter-TSS (NM_001198533)	-73	NM_001198533	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
107969	chr18	58529821	58530150	+	0	NA	intron (NM_052947, intron 5 of 12)	intron (NM_052947, intron 5 of 12)	-70635	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
22099	chr1	211613371	211613530	+	0	NA	Intergenic	Intergenic	-26358	NR_131925	105748977		NR_131925	ENSG00000227764	NTRAS	LINC01693	non-coding transcript regulating alternative splicing	ncRNA
20651	chr1	200042471	200042980	+	0	NA	promoter-TSS (NM_001276464)	promoter-TSS (NM_001276464)	-100	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
227084	chr9	85694271	85694830	+	0	NA	intron (NM_001286717, intron 1 of 24)	L2|LINE|L2	47404	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
237967	chrX	133792351	133792800	+	0	NA	intron (NM_001164619, intron 1 of 6)	intron (NM_001164619, intron 1 of 6)	-104868	NR_148713	110806308		NR_148713	ENSG00000286096	GPC3-AS1	-	GPC3 antisense RNA 1	ncRNA
24385	chr1	241847601	241848800	+	0	NA	promoter-TSS (NM_006027)	promoter-TSS (NM_006027)	-4	NM_130398	9156		NM_003686	ENSG00000174371	EXO1	HEX1|hExoI	exonuclease 1	protein-coding
216871	chr8	22628701	22629530	+	0	NA	intron (NR_156436, intron 6 of 9)	intron (NR_156436, intron 6 of 9)	13094	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
104916	chr17	81908801	81909100	+	0	NA	exon (NM_001282204, exon 3 of 13)	exon (NM_001282204, exon 3 of 13)	2225	NM_001282204	5833		NM_002861	ENSG00000185813	PCYT2	ET|SPG82	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
37848	chr11	33700251	33701750	+	0	NA	promoter-TSS (NM_001166692)	promoter-TSS (NM_001166692)	-260	NM_001166692	100131378		NM_001166692	ENSG00000205177	C11orf91	-	chromosome 11 open reading frame 91	protein-coding
108056	chr18	59697271	59697430	+	0	NA	promoter-TSS (NM_133459)	promoter-TSS (NM_133459)	73	NM_133459	147372		NM_133459	ENSG00000183287	CCBE1	HKLLS1	collagen and calcium binding EGF domains 1	protein-coding
13357	chr1	113869071	113869530	+	0	NA	intron (NM_012411, intron 1 of 18)	L2b|LINE|L2	2412	NM_015967	26191		NM_012411	ENSG00000134242	PTPN22	LYP|LYP1|LYP2|PEP|PTPN22.5|PTPN22.6|PTPN8	protein tyrosine phosphatase non-receptor type 22	protein-coding
12837	chr1	110053601	110054480	+	0	NA	non-coding (NR_073071, exon 22 of 22)	non-coding (NR_073071, exon 22 of 22)	16632	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
121837	chr19	48153571	48154180	+	0	NA	exon (NM_001320970, exon 6 of 28)	exon (NM_001320970, exon 6 of 28)	16469	NR_135497	3978		NM_000234	ENSG00000105486	LIG1	IMD96|LIGI|hLig1	DNA ligase 1	protein-coding
236823	chrX	79178771	79178930	+	0	NA	Intergenic	L1MA1|LINE|L1	34162	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
46107	chr11	122876601	122877000	+	0	NA	Intergenic	AluSz|SINE|Alu	-5728	NM_199124	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
132162	chr2	101758971	101759130	+	0	NA	intron (NM_001384572, intron 1 of 29)	AluY|SINE|Alu	60785	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
154469	chr22	35552101	35553300	+	0	NA	3' UTR (NM_014310, exon 3 of 3)	3' UTR (NM_014310, exon 3 of 3)	11869	NM_014310	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
70043	chr14	100114151	100114750	+	0	NA	intron (NM_016337, intron 3 of 13)	intron (NM_016337, intron 3 of 13)	4795	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
21915	chr1	207832921	207833180	+	0	NA	Intergenic	Intergenic	-10347	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
171356	chr3	196063571	196064130	+	0	NA	intron (NM_001313966, intron 9 of 16)	AluSx1|SINE|Alu	18240	NM_001128148	7037		NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding
144799	chr20	36647551	36647650	+	0	NA	Intergenic	Intergenic	-1404	NM_032214	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
60247	chr13	40578971	40579330	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	87491	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
117496	chr19	19822951	19823280	+	0	NA	intron (NM_001355194, intron 1 of 2)	LTR66|LTR|ERVL	-1365	NM_001145404	440515		NM_001099269	ENSG00000081665	ZNF506	-	zinc finger protein 506	protein-coding
157416	chr22	45079921	45080650	+	0	NA	Intergenic	(CATCAT)n|Simple_repeat|Simple_repeat	-70280	NM_138415	112885		NM_138415	ENSG00000056487	PHF21B	BHC80L|PHF4	PHD finger protein 21B	protein-coding
169874	chr3	177345451	177346080	+	0	NA	Intergenic	Intergenic	51323	NR_047465	100820709		NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
111287	chr19	3569221	3569480	+	0	NA	Intergenic	AluSx|SINE|Alu	-3594	NM_006339	10362		NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
55295	chr12	103442411	103442630	+	0	NA	intron (NR_103526, intron 2 of 10)	intron (NR_103526, intron 2 of 10)	53448	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
76341	chr15	74430351	74430880	+	0	NA	intron (NM_001146029, intron 1 of 12)	intron (NM_001146029, intron 1 of 12)	3089	NM_001146030	8482		NM_003612	ENSG00000138623	SEMA7A	CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|PFIC11|SEMAK1|SEMAL	semaphorin 7A (JohnMiltonHagen blood group)	protein-coding
225777	chr9	37430921	37431380	+	0	NA	intron (NM_012203, intron 7 of 8)	intron (NM_012203, intron 7 of 8)	8454	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
193860	chr6	31557151	31557450	+	0	NA	intron (NM_001144962, intron 2 of 3).3	AluY|SINE|Alu	9692	NM_005007	4795		NM_005007	ENSG00000204498	NFKBIL1	IKBL|NFKBIL	NFKB inhibitor like 1	protein-coding
214703	chr7	150994071	150995180	+	0	NA	intron (NM_001160109, intron 1 of 13)	intron (NM_001160109, intron 1 of 13)	821	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
221250	chr8	122732471	122732900	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-38579	NR_126348	104266958		NR_126348		LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA
102619	chr17	75977651	75977830	+	0	NA	intron (NM_007292, intron 2 of 13)	intron (NM_007292, intron 2 of 13)	1426	NM_004035	51		NM_004035	ENSG00000161533	ACOX1	ACOX|AOX|MITCH|PALMCOX|SCOX	acyl-CoA oxidase 1	protein-coding
232617	chr9	136441721	136442580	+	0	NA	intron (NM_014866, intron 31 of 31)	intron (NM_014866, intron 31 of 31)	-2305	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
205022	chr7	6501401	6502130	+	0	NA	intron (NM_001145118, intron 20 of 21)	intron (NM_001145118, intron 20 of 21)	-17613	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
64555	chr14	24612101	24612700	+	0	NA	Intergenic	L1PBa|LINE|L1	-2715	NM_033423	2999		NM_033423	ENSG00000100450	GZMH	CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2	granzyme H	protein-coding
52343	chr12	55019671	55020130	+	0	NA	promoter-TSS (NM_021191)	promoter-TSS (NM_021191)	-74	NM_021191	58158		NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding
48144	chr12	7915131	7916800	+	0	NA	Intergenic	Intergenic	20222	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
118217	chr19	35166851	35167650	+	0	NA	intron (NM_001320912, intron 8 of 8)	LTR33|LTR|ERVL	12515	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
158297	chr22	50382771	50383130	+	0	NA	intron (NM_001351641, intron 2 of 23)	AluSx|SINE|Alu	-24492	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
55260	chr12	102169901	102170180	+	0	NA	intron (NM_001382735, intron 4 of 4)	intron (NM_001382735, intron 4 of 4)	27793	NM_002674	5367		NM_002674	ENSG00000183395	PMCH	MCH|ppMCH	pro-melanin concentrating hormone	protein-coding
19928	chr1	184490321	184490780	+	0	NA	intron (NM_030806, intron 2 of 5)	intron (NM_030806, intron 2 of 5)	103521	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
69831	chr14	99229501	99231000	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	41947	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
35103	chr11	641201	641650	+	0	NA	TTS (NM_000797)	TTS (NM_000797)	4156	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
1698	chr1	4826151	4826250	+	0	NA	Intergenic	Intergenic	171591	NM_018836	55966		NM_018836	ENSG00000196581	AJAP1	MOT8|SHREW-1|SHREW1	adherens junctions associated protein 1	protein-coding
130111	chr2	74530501	74531400	+	0	NA	non-coding (NR_135769, exon 3 of 8)	non-coding (NR_135769, exon 3 of 8)	1017	NM_013247	27429		NM_013247	ENSG00000115317	HTRA2	MGCA8|OMI|PARK13|PRSS25	HtrA serine peptidase 2	protein-coding
74943	chr15	63768351	63768650	+	0	NA	intron (NM_003922, intron 2 of 77)	intron (NM_003922, intron 2 of 77)	65448	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
75038	chr15	64149271	64149730	+	0	NA	Intergenic	L2b|LINE|L2	-2231	NR_073534	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
131509	chr2	96546001	96547730	+	0	NA	intron (NM_001319092, intron 1 of 6)	intron (NM_001319092, intron 1 of 6)	8986	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
98419	chr17	46635651	46635750	+	0	NA	intron (NR_033799, intron 4 of 6).2	Tigger13a|DNA|TcMar-Tigger	44966	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
168656	chr3	150414071	150414800	+	0	NA	intron (NM_001303264, intron 1 of 2)	intron (NM_001303264, intron 1 of 2)	6137	NR_130136	9819		NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding
164178	chr3	56797271	56797430	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	4599	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
201507	chr6	149054171	149054830	+	0	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-21839	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
159786	chr3	16318151	16318480	+	0	NA	intron (NM_015150, intron 9 of 9)	intron (NM_015150, intron 9 of 9)	53103	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
34780	chr11	212071	212230	+	0	NA	intron (NM_001286134, intron 5 of 9)	intron (NM_001286134, intron 5 of 9)	2814	NR_106801	102465445		NR_106801	ENSG00000283920	MIR6743	hsa-mir-6743	microRNA 6743	ncRNA
38126	chr11	35245751	35246450	+	0	NA	Intergenic	Intergenic	83150	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
189807	chr5	176929721	176929980	+	0	NA	intron (NR_146149, intron 10 of 15)	intron (NR_146149, intron 10 of 15)	-30504	NM_002115	3101		NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3	protein-coding
232789	chr9	136698151	136698250	+	0	NA	Intergenic	L1M5|LINE|L1	-10743	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
102787	chr17	76365521	76365780	+	0	NA	Intergenic	AluJo|SINE|Alu	-11452	NM_001366236	5635		NM_002766	ENSG00000161542	PRPSAP1	PAP39	phosphoribosyl pyrophosphate synthetase associated protein 1	protein-coding
214954	chr7	151797021	151797280	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-9188	NM_001354885	644090		NM_001354885	ENSG00000242048	PRKAG2-AS2	-	PRKAG2 antisense RNA 2	ncRNA
218014	chr8	38465871	38467300	+	0	NA	intron (NM_001174067, intron 1 of 18)	intron (NM_001174067, intron 1 of 18)	1139	NM_001174066	2260		NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
224901	chr9	32523551	32524150	+	0	NA	intron (NM_014314, intron 1 of 17)	L2c|LINE|L2	2346	NM_014314	23586		NM_014314	ENSG00000107201	RIGI	DDX58|RIG-I|RIG1|RLR-1|SGMRT2	RNA sensor RIG-I	protein-coding
40167	chr11	62886021	62886850	+	0	NA	intron (NM_001012662, intron 10 of 11)	AluJb|SINE|Alu	4736	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
15567	chr1	150556951	150557650	+	0	NA	exon (NM_025008, exon 12 of 15)	exon (NM_025008, exon 12 of 15)	5371	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
25330	chr10	6232421	6232680	+	0	NA	intron (NM_001314063, intron 15 of 15)	intron (NM_001314063, intron 15 of 15)	29618	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
134060	chr2	131490151	131490530	+	0	NA	TTS (NR_039945)	TTS (NR_039945)	896	NR_039945	100616378		NR_039945	ENSG00000284149	MIR4784	-	microRNA 4784	ncRNA
9371	chr1	47233651	47233950	+	0	NA	Intergenic	Intergenic	-1465	NM_001290403	6886		NM_003189	ENSG00000162367	TAL1	SCL|TCL5|bHLHa17|tal-1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein-coding
168906	chr3	152331101	152331600	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	9640	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
39207	chr11	57515501	57516630	+	0	NA	promoter-TSS (NM_003627)	promoter-TSS (NM_003627)	-363	NM_003627	8501		NM_003627	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	solute carrier family 43 member 1	protein-coding
69138	chr14	92545471	92546080	+	0	NA	intron (NM_024832, intron 1 of 9)	L1MC4|LINE|L1	-30459	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
68264	chr14	77036521	77037400	+	0	NA	Intergenic	MIRb|SINE|MIR	-2754	NR_169510	105370579		NR_169510		LOC105370579	-	uncharacterized LOC105370579	ncRNA
99977	chr17	57601251	57602000	+	0	NA	non-coding (NR_110807, exon 3 of 3)	non-coding (NR_110807, exon 3 of 3)	6787	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
211084	chr7	102485601	102485800	+	0	NA	intron (NM_001367767, intron 18 of 20)	AluY|SINE|Alu	-6778	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
83951	chr16	29144501	29144900	+	0	NA	Intergenic	Intergenic	69858	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
224651	chr9	20685401	20685630	+	0	NA	promoter-TSS (NR_121601)	promoter-TSS (NR_121601)	-765	NR_121601	101929548		NR_121601	ENSG00000227071	FOCAD-AS1	-	FOCAD antisense RNA 1	ncRNA
214604	chr7	150685101	150686350	+	0	NA	promoter-TSS (NM_015660)	promoter-TSS (NM_015660)	19	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
235927	chrX	53191771	53192030	+	0	NA	TTS (NM_001353978)	TTS (NM_001353978)	3588	NR_106955	102465539		NR_106955	ENSG00000276575	MIR6895	hsa-mir-6895	microRNA 6895	ncRNA
105929	chr18	3499671	3499830	+	0	NA	intron (NM_001242763, intron 10 of 10)	intron (NM_001242763, intron 10 of 10)	33500	NR_110429	100505592		NR_110428	ENSG00000266835	GAPLINC	LINC01540	gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA	ncRNA
117837	chr19	31339651	31340750	+	0	NA	intron (NR_138034, intron 1 of 1)	intron (NR_138034, intron 1 of 1)	9236	NR_138034	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
72204	chr15	30171001	30171200	+	0	NA	Intergenic	MIRc|SINE|MIR	-24936	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
150338	chr21	42118601	42119250	+	0	NA	intron (NM_173568, intron 13 of 21)	intron (NM_173568, intron 13 of 21)	-10391	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
222532	chr8	140579351	140580130	+	0	NA	intron (NM_012154, intron 2 of 18)	intron (NM_012154, intron 2 of 18)	55893	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
149488	chr21	32403021	32403750	+	0	NA	Intergenic	Intergenic	-8338	NM_001320745	59271		NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21	eva-1 homolog C	protein-coding
208531	chr7	70646801	70647000	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-485244	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
118030	chr19	34217051	34217150	+	0	NA	intron (NR_169262, intron 6 of 7)	AluSx4|SINE|Alu	-37454	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
211317	chr7	103573501	103573700	+	0	NA	intron (NM_173054, intron 30 of 63)	intron (NM_173054, intron 30 of 63)	-127393	NM_206883	375611		NM_198999	ENSG00000170615	SLC26A5	DFNB61|PRES	solute carrier family 26 member 5	protein-coding
93543	chr17	19059171	19060050	+	0	NA	Intergenic	L1M4|LINE|L1	-2302	NR_003924	780852		NR_003924		SNORD3B-2	U3-2B|U3b2	small nucleolar RNA, C/D box 3B-2	snoRNA
14972	chr1	147965501	147965880	+	0	NA	intron (NM_016334, intron 7 of 13)	intron (NM_016334, intron 7 of 13)	37270	NM_016334	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
230785	chr9	128930071	128930430	+	0	NA	intron (NM_174933, intron 4 of 11)	AluSz6|SINE|Alu	7967	NM_001100877	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
224378	chr9	8206851	8206950	+	0	NA	Intergenic	Intergenic	-407122	NM_001318059	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
19364	chr1	173863671	173865430	+	0	NA	promoter-TSS (NR_003938)	promoter-TSS (NR_003938)	-105	NR_002746	26802		NR_002746		SNORD47	RNU47|U47	small nucleolar RNA, C/D box 47	snoRNA
208816	chr7	73649371	73649530	+	0	NA	Intergenic	Intergenic	-18381	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
133550	chr2	120442871	120443230	+	0	NA	Intergenic	CpG	23299	NR_027181	84931		NM_032845	ENSG00000280409	LINC01101	-	long intergenic non-protein coding RNA 1101	ncRNA
128350	chr2	54903921	54904500	+	0	NA	intron (NM_001039753, intron 23 of 40)	intron (NM_001039753, intron 23 of 40)	106062	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
14301	chr1	143799171	143800150	+	0	NA	Intergenic	Intergenic	6060	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
29931	chr10	73368271	73368630	+	0	NA	Intergenic	L1MB7|LINE|L1	-9586	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
20359	chr1	197915051	197915450	+	0	NA	intron (NM_001014434, intron 1 of 5)	intron (NM_001014434, intron 1 of 5)	-2122	NM_020204	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
189586	chr5	175535951	175536250	+	0	NA	Intergenic	Intergenic	57540	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
218387	chr8	45336171	45336330	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1281393	NR_146077	389652		NR_146077	ENSG00000290398	ASNSP1	ASNSL1	ASNS pseudogene 1	pseudo
199045	chr6	111474151	111474880	+	0	NA	intron (NM_001286432, intron 2 of 33)	Charlie17b|DNA|hAT-Charlie	8703	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
149615	chr21	33381721	33382050	+	0	NA	Intergenic	Intergenic	-21011	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
99624	chr17	50563851	50564380	+	0	NA	intron (NM_198376, intron 1 of 34)	intron (NM_198376, intron 1 of 34)	-2007	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
105194	chr17	82303101	82304780	+	0	NA	Intergenic	Intergenic	-11126	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
201886	chr6	150891901	150892180	+	0	NA	intron (NM_015440, intron 7 of 27)	intron (NM_015440, intron 7 of 27)	25554	NM_001350491	25902		NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein-coding
100488	chr17	61837171	61837500	+	0	NA	intron (NM_032043, intron 6 of 19)	GA-rich|Low_complexity|Low_complexity	26193	NM_032043	83990		NM_032043	ENSG00000136492	BRIP1	BACH1|FANCJ|OF	BRCA1 interacting helicase 1	protein-coding
147718	chr20	62370621	62370880	+	0	NA	Intergenic	Intergenic	-3438	NM_005560	3911		NM_005560	ENSG00000130702	LAMA5	BBDS2|NPHS26	laminin subunit alpha 5	protein-coding
16903	chr1	155873951	155874250	+	0	NA	intron (NM_152280, intron 2 of 3)	AluSz6|SINE|Alu	14533	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
3518	chr1	16058871	16059400	+	0	NA	intron (NM_182623, intron 6 of 6)	MIR|SINE|MIR	10373	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
117468	chr19	19732681	19734000	+	0	NA	promoter-TSS (NM_021030)	promoter-TSS (NM_021030)	-228	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
196432	chr6	43453601	43453800	+	0	NA	intron (NM_206539, intron 3 of 5)	AluSz|SINE|Alu	1848	NM_023932	65989		NM_023932	ENSG00000171462	DLK2	DLK-2|EGFL9	delta like non-canonical Notch ligand 2	protein-coding
21727	chr1	206786101	206787000	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-14056	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
10072	chr1	58777321	58777600	+	0	NA	Intergenic	Intergenic	6587	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
87114	chr16	68738151	68738250	+	0	NA	intron (NM_004360, intron 1 of 15)	CpG	908	NM_001317185	999		NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
207236	chr7	43756771	43756930	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-1823	NM_001253823	644		NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA|BVRalpha	biliverdin reductase A	protein-coding
155365	chr22	38290021	38290650	+	0	NA	TTS (NM_001289912)	TTS (NM_001289912)	-17325	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
158122	chr22	50083971	50084700	+	0	NA	intron (NM_015166, intron 2 of 11)	intron (NM_015166, intron 2 of 11)	1091	NR_164811	23209		NM_015166	ENSG00000100427	MLC1	LVM|MLC|VL	modulator of VRAC current 1	protein-coding
205944	chr7	26090601	26091700	+	0	NA	Intergenic	Intergenic	-61048	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
175179	chr4	56301471	56301700	+	0	NA	intron (NM_020722, intron 4 of 10)	intron (NM_020722, intron 4 of 10)	85906	NM_001323892	132949		NM_181806	ENSG00000157426	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
86067	chr16	57600001	57600750	+	0	NA	Intergenic	MIR3|SINE|MIR	-19363	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
229558	chr9	122947801	122948580	+	0	NA	intron (NM_012197, intron 1 of 25)	intron (NM_012197, intron 1 of 25)	7170	NM_012197	23637		NM_012197	ENSG00000011454	RABGAP1	GAPCENA|TBC1D11	RAB GTPase activating protein 1	protein-coding
56427	chr12	113356771	113357250	+	0	NA	Intergenic	LTR61|LTR|ERV1	-1577	NM_001159727	196463		NM_173542	ENSG00000151176	PLBD2	P76	phospholipase B domain containing 2	protein-coding
61815	chr13	75674551	75674800	+	0	NA	intron (NM_001306080, intron 1 of 30)	intron (NM_001306080, intron 1 of 30)	38345	NM_001306080	4008		NM_005358	ENSG00000136153	LMO7	FBX20|FBXO20|LMO7b|LOMP	LIM domain 7	protein-coding
135242	chr2	159615371	159616300	+	0	NA	promoter-TSS (NM_001329858)	promoter-TSS (NM_001329858)	-270	NM_001329858	29994		NM_013450	ENSG00000123636	BAZ2B	WALp4	bromodomain adjacent to zinc finger domain 2B	protein-coding
177262	chr4	109433221	109434700	+	0	NA	promoter-TSS (NR_039978)	promoter-TSS (NR_039978)	-143	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
100615	chr17	63545451	63545550	+	0	NA	intron (NM_173092, intron 13 of 14)	intron (NM_173092, intron 13 of 14)	-4977	NM_005828	10238		NM_005828	ENSG00000136485	DCAF7	AN11|HAN11|SWAN-1|WDR68	DDB1 and CUL4 associated factor 7	protein-coding
79882	chr16	1537671	1538400	+	0	NA	intron (NM_024600, intron 1 of 2)	intron (NM_024600, intron 1 of 2)	4369	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
163635	chr3	52060951	52061050	+	0	NA	Intergenic	Intergenic	4112	NR_027331	100128378		NM_001123039		LINC00696	C3orf74	long intergenic non-protein coding RNA 696	ncRNA
223209	chr8	143587301	143587700	+	0	NA	intron (NM_001195203, intron 1 of 7).2	AluSx3|SINE|Alu	-9170	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
228423	chr9	99720401	99721130	+	0	NA	intron (NR_109802, intron 2 of 6)	MLT1J-int|LTR|ERVL-MaLR	99124	NR_109802	101928438		NR_109802	ENSG00000237461	LOC101928438	-	uncharacterized LOC101928438	ncRNA
98843	chr17	48437501	48437700	+	0	NA	Intergenic	AluSz6|SINE|Alu	-7233	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
90220	chr17	502771	503780	+	0	NA	Intergenic	Intergenic	-57335	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
22570	chr1	222669451	222669700	+	0	NA	3' UTR (NM_022831, exon 10 of 10)	3' UTR (NM_022831, exon 10 of 10)	25272	NM_001300867	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
210734	chr7	100626251	100627230	+	0	NA	intron (NM_003227, intron 17 of 17)	G-rich|Low_complexity|Low_complexity	6910	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
58760	chr12	132671771	132672130	+	0	NA	intron (NM_006231, intron 16 of 48)	intron (NM_006231, intron 16 of 48)	15392	NM_006231	5426		NM_006231	ENSG00000177084	POLE	CRCS12|FILS|IMAGEI|POLE1	DNA polymerase epsilon, catalytic subunit	protein-coding
50578	chr12	48332401	48332800	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	3620	NM_181788	341567		NM_181788	ENSG00000187166	H1-7	H1.7|H1FNT|H1T2	H1.7 linker histone	protein-coding
237948	chrX	132631521	132631830	+	0	NA	intron (NM_147175, intron 3 of 3)	intron (NM_147175, intron 3 of 3)	-35967	NR_046691	100874102		NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
142518	chr20	4869151	4869850	+	0	NA	intron (NM_203327, intron 12 of 16)	intron (NM_203327, intron 12 of 16)	-45892	NM_014737	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
27586	chr10	32378581	32380330	+	0	NA	promoter-TSS (NM_001382754)	promoter-TSS (NM_001382754)	-686	NR_168506	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
23784	chr1	233394971	233395130	+	0	NA	Intergenic	Intergenic	67326	NM_032435	84451		NM_032435	ENSG00000143674	MAP3K21	MLK4|dJ862P8.3	mitogen-activated protein kinase kinase kinase 21	protein-coding
163552	chr3	51692521	51693250	+	0	NA	intron (NM_015926, intron 3 of 4)	intron (NM_015926, intron 3 of 4)	-14183	NM_001349116	2912		NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate metabotropic receptor 2	protein-coding
51963	chr12	53767671	53768080	+	0	NA	Intergenic	Intergenic	-10841	NR_104332	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
212864	chr7	130859821	130860530	+	0	NA	Intergenic	THE1A|LTR|ERVL-MaLR	16635	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
202098	chr6	154705471	154705730	+	0	NA	Intergenic	MER68|LTR|ERVL	-27778	NM_001286189	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
58795	chr12	132768201	132769200	+	0	NA	TTS (NM_005895)	TTS (NM_005895)	-6868	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
4531	chr1	21913551	21914350	+	0	NA	intron (NM_001291860, intron 1 of 96)	MIRb|SINE|MIR	23360	NM_005529	3339		NM_005529	ENSG00000142798	HSPG2	HSPG|PLC|PRCAN|SJA|SJS|SJS1	heparan sulfate proteoglycan 2	protein-coding
180590	chr5	14984951	14985280	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-113337	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
115872	chr19	16564001	16564650	+	0	NA	intron (NM_024881, intron 4 of 5)	AluSz|SINE|Alu	8090	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
182416	chr5	61353001	61353200	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	20842	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
35078	chr11	617601	617950	+	0	NA	intron (NM_001171968, intron 14 of 14)	CpG	-1825	NM_004029	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
91170	chr17	3796201	3797480	+	0	NA	intron (NM_002208, intron 1 of 30)	MIR1_Amn|SINE|MIR	4348	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
189978	chr5	177448971	177449130	+	0	NA	intron (NM_001174102, intron 1 of 2)	MER102a|DNA|hAT-Charlie	725	NM_001174102	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
96999	chr17	42285221	42285480	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2197	NM_003152	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
46601	chr11	128545801	128546200	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	19858	NR_120581	101929517		NR_120581	ENSG00000254588	ETS1-AS1	pancEts-1	ETS1 antisense RNA 1	ncRNA
18987	chr1	169312101	169312640	+	0	NA	intron (NR_104229, intron 3 of 12)	MLT1H2|LTR|ERVL-MaLR	55427	NM_013330	29922		NM_013330	ENSG00000143156	NME7	CFAP67|MN23H7|NDK 7|NDK7|nm23-H7	NME/NM23 family member 7	protein-coding
211536	chr7	105385451	105385750	+	0	NA	intron (NM_001350742, intron 2 of 16)	intron (NM_001350742, intron 2 of 16)	3321	NM_182692	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
165240	chr3	73024971	73025200	+	0	NA	intron (NM_001318025, intron 2 of 7)	intron (NM_001318025, intron 2 of 7)	28274	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
222655	chr8	141172901	141173930	+	0	NA	non-coding (NR_148197, exon 14 of 24)	non-coding (NR_148197, exon 14 of 24)	44826	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
97582	chr17	44101171	44101550	+	0	NA	intron (NM_001382393, intron 3 of 26)	AluY|SINE|Alu	-14552	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
210633	chr7	100457371	100458150	+	0	NA	intron (NM_001004323, intron 2 of 2)	AluJb|SINE|Alu	6500	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
123839	chr19	55229371	55230050	+	0	NA	promoter-TSS (NM_001372013)	promoter-TSS (NM_001372013)	-947	NM_173804	255043		NM_173804	ENSG00000180089	TMEM86B	-	transmembrane protein 86B	protein-coding
20157	chr1	192702351	192702650	+	0	NA	Intergenic	Intergenic	-13828	NR_039624	100616345		NR_039624	ENSG00000283795	MIR4426	-	microRNA 4426	ncRNA
146303	chr20	49178871	49179180	+	0	NA	intron (NM_001319135, intron 2 of 14)	AluY|SINE|Alu	9309	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
211811	chr7	107920371	107920950	+	0	NA	3' UTR (NM_000108, exon 14 of 14)	3' UTR (NM_000108, exon 14 of 14)	29477	NM_000108	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
65764	chr14	54395501	54395700	+	0	NA	Intergenic	MLT2C2|LTR|ERVL	-1268	NM_001330173	1033		NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
227732	chr9	93057701	93060230	+	0	NA	intron (NM_001287007, intron 1 of 2)	CpG	264	NM_001287007	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
166621	chr3	119497951	119499530	+	0	NA	exon (NM_016589, exon 1 of 7)	exon (NM_016589, exon 1 of 7)	193	NM_016589	51300		NM_016589	ENSG00000113845	TIMMDC1	C3orf1|MC1DN31	translocase of inner mitochondrial membrane domain containing 1	protein-coding
155957	chr22	39730021	39730280	+	0	NA	Intergenic	Intergenic	159397	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
181943	chr5	54994601	54995280	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9347	NM_001135604	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
188242	chr5	151029551	151029650	+	0	NA	TTS (NM_002084)	TTS (NM_002084)	9009	NM_002084	2878		NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
55486	chr12	104733551	104734130	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	142207	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
97318	chr17	43248751	43249330	+	0	NA	Intergenic	AluSx|SINE|Alu	2979	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
137198	chr2	191152851	191153300	+	0	NA	Intergenic	Intergenic	-1479	NM_001243835	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
12638	chr1	109213421	109215600	+	0	NA	intron (NM_006513, intron 1 of 10)	intron (NM_006513, intron 1 of 10)	592	NM_006513	6301		NM_006513	ENSG00000031698	SARS1	NEDMAS|SARS|SERRS|SERS	seryl-tRNA synthetase 1	protein-coding
222905	chr8	142816021	142817150	+	0	NA	Intergenic	Intergenic	-18216	NM_002066	2765		NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
87535	chr16	71905101	71905300	+	0	NA	intron (NM_001270979, intron 1 of 5)	AluSg|SINE|Alu	9669	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
218881	chr8	60548671	60549430	+	0	NA	intron (NM_001242644, intron 1 of 6)	SVA_D|Retroposon|SVA	32063	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
37647	chr11	22634501	22634900	+	0	NA	Intergenic	L1PBa|LINE|L1	-8877	NM_022725	2188		NM_022725	ENSG00000183161	FANCF	FAF	FA complementation group F	protein-coding
216399	chr8	17940971	17941550	+	0	NA	intron (NM_001352651, intron 6 of 38)	intron (NM_001352651, intron 6 of 38)	18272	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
107806	chr18	51190901	51191880	+	0	NA	intron (NM_016626, intron 1 of 1)	MLT1I|LTR|ERVL-MaLR	6291	NM_016626	51320		NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding
155607	chr22	38824371	38824980	+	0	NA	intron (NM_014293, intron 3 of 4)	intron (NM_014293, intron 3 of 4)	19353	NM_014293	23467		NM_014293	ENSG00000221890	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
189301	chr5	172128851	172129150	+	0	NA	intron (NM_005990, intron 2 of 18)	MIRb|SINE|MIR	59224	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
82287	chr16	15587021	15587480	+	0	NA	3' UTR (NM_033201, exon 6 of 6).2	3' UTR (NM_033201, exon 6 of 6).2	23845	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
110567	chr19	2139951	2140050	+	0	NA	intron (NM_001374799, intron 1 of 31)	intron (NM_001374799, intron 1 of 31)	11566	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
146009	chr20	46680501	46680700	+	0	NA	intron (NM_001193340, intron 1 of 12)	LTR16A|LTR|ERVL	3885	NM_001193340	64849		NM_022829	ENSG00000158296	SLC13A3	ARLIAK|NADC3|NaC3|SDCT2	solute carrier family 13 member 3	protein-coding
237589	chrX	123859651	123861800	+	0	NA	intron (NM_001378590, intron 1 of 6)	intron (NM_001378590, intron 1 of 6)	275	NM_001378590	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
165573	chr3	101560471	101560630	+	0	NA	Intergenic	L1MB4|LINE|L1	-1318	NM_017819	54931		NM_017819	ENSG00000174173	TRMT10C	COXPD30|HNYA|MRPP1|RG9MTD1	tRNA methyltransferase 10C, mitochondrial RNase P subunit	protein-coding
107587	chr18	48852801	48853200	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	89807	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
88689	chr16	85789701	85790100	+	0	NA	intron (NM_006067, intron 1 of 4)	intron (NM_006067, intron 1 of 4)	-2515	NR_135193	101928557		NR_135193	ENSG00000270159	LOC101928557	-	uncharacterized LOC101928557	ncRNA
159264	chr3	12951621	12951880	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	15980	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
220659	chr8	101131421	101131680	+	0	NA	Intergenic	Intergenic	38689	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
113853	chr19	10643451	10644000	+	0	NA	3' UTR (NM_001145056, exon 22 of 22)	3' UTR (NM_001145056, exon 22 of 22)	10147	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
109460	chr19	791201	792130	+	0	NA	Intergenic	Intergenic	-5787	NM_002819	5725		NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
189034	chr5	169648571	169649030	+	0	NA	intron (NR_156756, intron 1 of 52)	MIR|SINE|MIR	11525	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
175146	chr4	55435051	55435650	+	0	NA	3' UTR (NM_004898, exon 23 of 23)	3' UTR (NM_004898, exon 23 of 23)	39393	NR_073070	55858		NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|SLC64A1|TMPT27|TPARL	transmembrane protein 165	protein-coding
173805	chr4	17804321	17804580	+	0	NA	non-coding (NR_144301, exon 3 of 4)	non-coding (NR_144301, exon 3 of 4)	6307	NM_001345885	54876		NM_017741	ENSG00000163257	DCAF16	C4orf30	DDB1 and CUL4 associated factor 16	protein-coding
137166	chr2	191109921	191110380	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	40844	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
26618	chr10	22338771	22338930	+	0	NA	Intergenic	Intergenic	-6595	NM_001253855	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
216093	chr8	11015901	11017300	+	0	NA	intron (NM_173683, intron 1 of 2)	CpG	18702	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
134119	chr2	134126571	134126930	+	0	NA	promoter-TSS (NR_037450)	promoter-TSS (NR_037450)	-375	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
121447	chr19	47038621	47038880	+	0	NA	intron (NM_002517, intron 6 of 11)	AluSz|SINE|Alu	3433	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
204117	chr7	2258951	2259330	+	0	NA	intron (NM_013321, intron 7 of 10)	intron (NM_013321, intron 7 of 10)	-1563	NR_106895	102465503		NR_106895	ENSG00000284047	MIR6836	hsa-mir-6836	microRNA 6836	ncRNA
40369	chr11	63989051	63989450	+	0	NA	intron (NR_003089, intron 3 of 5)	AluSx1|SINE|Alu	3397	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
109791	chr19	1149201	1149400	+	0	NA	intron (NM_014963, intron 3 of 31)	intron (NM_014963, intron 3 of 31)	-17079	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
237660	chrX	124276451	124276750	+	0	NA	Intergenic	L2b|LINE|L2	-56060	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
117331	chr19	19522651	19523600	+	0	NA	intron (NM_015965, intron 1 of 4)	L1MB8|LINE|L1	-5786	NM_001190328	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
127051	chr2	37242471	37242630	+	0	NA	intron (NR_146403, intron 5 of 9)	intron (NR_146403, intron 5 of 9)	10892	NR_146404	55471		NM_018607	ENSG00000003509	NDUFAF7	C2orf56|MidA|PRO1853	NADH:ubiquinone oxidoreductase complex assembly factor 7	protein-coding
117004	chr19	18904171	18904630	+	0	NA	intron (NM_007263, intron 6 of 9)	intron (NM_007263, intron 6 of 9)	-7673	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
220909	chr8	106704471	106704630	+	0	NA	intron (NM_181354, intron 6 of 13)	AluSx1|SINE|Alu	-21557	NM_001198534	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
179058	chr4	165398751	165398850	+	0	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	12558	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
123765	chr19	55091121	55091380	+	0	NA	3' UTR (NM_001271618, exon 22 of 22)	3' UTR (NM_001271618, exon 22 of 22)	10858	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
53729	chr12	68629871	68630230	+	0	NA	intron (NM_001251917, intron 1 of 5)	MER117|DNA|hAT-Charlie	-2675	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
42980	chr11	73787571	73788980	+	0	NA	intron (NM_001318500, intron 1 of 5)	MIR3|SINE|MIR	401	NR_134661	51642		NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48|mL48	mitochondrial ribosomal protein L48	protein-coding
172032	chr4	997121	997880	+	0	NA	intron (NR_110313, intron 2 of 13)	CpG	-2210	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
173661	chr4	13656601	13657300	+	0	NA	intron (NR_121681, intron 1 of 3)	intron (NR_121681, intron 1 of 3)	1771	NR_121681	101929071		NR_121681	ENSG00000250634	LINC01182	-	long intergenic non-protein coding RNA 1182	ncRNA
38058	chr11	35175851	35176280	+	0	NA	intron (NM_001202557, intron 1 of 8)	AluYm1|SINE|Alu	13115	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
136401	chr2	176139151	176139730	+	0	NA	non-coding (NR_148241, exon 2 of 2)	non-coding (NR_148241, exon 2 of 2)	-2342	NR_038435	100506783		NR_038435		HOXD-AS2	-	HOXD cluster antisense RNA 2	ncRNA
217207	chr8	26373551	26374530	+	0	NA	Intergenic	Intergenic	8913	NR_144550	157489		NR_144550	ENSG00000293314	SDAD1P1	-	SDA1 domain containing 1 pseudogene 1	pseudo
57707	chr12	122863151	122863980	+	0	NA	TTS (NM_003959)	TTS (NM_003959)	28108	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
140460	chr2	233168421	233168680	+	0	NA	intron (NM_001017915, intron 13 of 26).2	MER58B|DNA|hAT-Charlie	-83021	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
110710	chr19	2306101	2306580	+	0	NA	intron (NM_001101391, intron 1 of 1)	intron (NM_001101391, intron 1 of 1)	1814	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
150790	chr21	43868101	43868700	+	0	NA	intron (NM_001369878, intron 1 of 8)	intron (NM_001369878, intron 1 of 8)	3177	NM_001369878	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
47976	chr12	6889651	6889750	+	0	NA	promoter-TSS (NR_135083)	promoter-TSS (NR_135083)	-342	NR_135083	105369632		NR_135083	ENSG00000111671	LOC105369632	-	uncharacterized LOC105369632	ncRNA
164062	chr3	53883421	53884050	+	0	NA	TTS (NM_021237)	TTS (NM_021237)	-1583	NM_022899	93973		NM_022899	ENSG00000113812	ACTR8	ARP8|INO80N|hArp8	actin related protein 8	protein-coding
71314	chr14	105370671	105371430	+	0	NA	intron (NM_001243127, intron 8 of 23)	intron (NM_001243127, intron 8 of 23)	-27488	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
92934	chr17	16873201	16873500	+	0	NA	Intergenic	Intergenic	-27478	NR_146392	147228		NM_001349721		KRT17P1	-	keratin 17 pseudogene 1	pseudo
120002	chr19	41927151	41927250	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	1249	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
140791	chr2	235766201	235766500	+	0	NA	intron (NM_001037131, intron 6 of 17)	intron (NM_001037131, intron 6 of 17)	-248429	NR_146582	27321		NR_146582		TNRC17	CAGL234	trinucleotide repeat containing 17	ncRNA
83248	chr16	23879921	23880500	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	44227	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
156289	chr22	40486021	40486280	+	0	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-22710	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
8806	chr1	42940001	42940500	+	0	NA	intron (NM_006516, intron 2 of 9)	intron (NM_006516, intron 2 of 9)	18618	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
150461	chr21	42513271	42515450	+	0	NA	5' UTR (NM_001320537, exon 1 of 20)	5' UTR (NM_001320537, exon 1 of 20)	508	NM_001320537	54020		NM_018964	ENSG00000160190	SLC37A1	G3PP|SPX1	solute carrier family 37 member 1	protein-coding
5842	chr1	26710301	26710530	+	0	NA	intron (NM_139135, intron 1 of 19)	AluSc|SINE|Alu	14400	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
22621	chr1	223517321	223517580	+	0	NA	Intergenic	AluY|SINE|Alu	124035	NM_152610	164127		NM_152610	ENSG00000178395	CCDC185	C1orf65	coiled-coil domain containing 185	protein-coding
202066	chr6	154232031	154232950	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	97591	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
231035	chr9	129610401	129611830	+	0	NA	intron (NM_001286796, intron 1 of 3)	intron (NM_001286796, intron 1 of 3)	2231	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
238152	chrX	136774721	136774980	+	0	NA	intron (NM_004840, intron 2 of 21)	GA-rich|Low_complexity|Low_complexity	6082	NM_004840	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
214709	chr7	151000651	151001100	+	0	NA	intron (NM_001160109, intron 9 of 13)	intron (NM_001160109, intron 9 of 13)	7071	NM_001160111	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
181976	chr5	55170621	55170880	+	0	NA	promoter-TSS (NR_029960)	promoter-TSS (NR_029960)	-8	NR_030387	693123		NR_030387	ENSG00000207728	MIR449B	MIRN449B|mir-449b	microRNA 449b	ncRNA
66788	chr14	64702551	64703600	+	0	NA	Intergenic	Intergenic	-1349	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
62813	chr13	109756721	109756980	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	28576	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
99376	chr17	49962271	49963150	+	0	NA	Intergenic	Intergenic	-6480	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
219538	chr8	76988171	76988330	+	0	NA	intron (NM_001079867, intron 1 of 2)	intron (NM_001079867, intron 1 of 2)	11828	NM_000318	5828		NM_000318	ENSG00000164751	PEX2	PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3	peroxisomal biogenesis factor 2	protein-coding
238805	chrX	154397371	154399200	+	0	NA	promoter-TSS (NM_006013)	promoter-TSS (NM_006013)	-92	NM_006013	6134		NM_006013	ENSG00000147403	RPL10	AUTSX5|DXS648|DXS648E|L10|MRXS35|NOV|QM|uL16	ribosomal protein L10	protein-coding
102613	chr17	75951221	75951880	+	0	NA	exon (NM_007292, exon 8 of 14)	exon (NM_007292, exon 8 of 14)	-13318	NM_001319193	85302		NM_001080542	ENSG00000188878	FBF1	Alb|FBF-1	Fas binding factor 1	protein-coding
111214	chr19	3490651	3490950	+	0	NA	TTS (NM_001145165)	TTS (NM_001145165)	9874	NM_031304	83475		NM_031304	ENSG00000129932	DOHH	HLRC1|NEDMVIC|hDOHH	deoxyhypusine hydroxylase	protein-coding
20064	chr1	185673901	185674450	+	0	NA	Intergenic	Intergenic	-45687	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
151294	chr21	45531151	45531450	+	0	NA	intron (NM_194255, intron 3 of 5)	CpG-18582	3456	NM_001205207	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
101490	chr17	67628701	67629200	+	0	NA	intron (NM_181671, intron 5 of 9)	LTR41B|LTR|ERVL	-88883	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
96358	chr17	40087401	40087830	+	0	NA	intron (NM_199334, intron 7 of 8)	intron (NM_199334, intron 7 of 8)	12974	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
19059	chr1	169890851	169891750	+	0	NA	intron (NM_181093, intron 1 of 13)	intron (NM_181093, intron 1 of 13)	2596	NM_020423	57147		NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding
144793	chr20	36640051	36640350	+	0	NA	intron (NM_175077, intron 2 of 7)	AluJb|SINE|Alu	5996	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
155065	chr22	37538421	37539330	+	0	NA	Intergenic	MIRb|SINE|MIR	-19460	NM_014550	29775		NM_014550	ENSG00000100065	CARD10	BIMP1|CARMA3|IMD89	caspase recruitment domain family member 10	protein-coding
9187	chr1	45603521	45603780	+	0	NA	intron (NM_152298, intron 3 of 13)	AluSp|SINE|Alu	19609	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
154463	chr22	35542071	35542380	+	0	NA	intron (NM_014310, intron 1 of 2)	intron (NM_014310, intron 1 of 2)	1394	NM_014310	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
185235	chr5	123036601	123036950	+	0	NA	promoter-TSS (NM_000943)	promoter-TSS (NM_000943)	-50	NM_000943	5480		NM_000943	ENSG00000168938	PPIC	CYPC	peptidylprolyl isomerase C	protein-coding
101761	chr17	72719371	72720250	+	0	NA	intron (NM_001352691, intron 8 of 10)	intron (NM_001352691, intron 8 of 10)	-79338	NR_033876	400619		NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA
232684	chr9	136524221	136524700	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	-4834	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
23145	chr1	226718321	226718900	+	0	NA	intron (NM_002221, intron 2 of 7)	AluJr|SINE|Alu	20565	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
45285	chr11	118047701	118048100	+	0	NA	intron (NM_001354434, intron 2 of 5)	intron (NM_001354434, intron 2 of 5)	-29112	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
79757	chr16	1356171	1356880	+	0	NA	intron (NM_032520, intron 3 of 10)	intron (NM_032520, intron 3 of 10)	4594	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
16933	chr1	155907201	155907400	+	0	NA	intron (NM_001256821, intron 3 of 5)	AluSx|SINE|Alu	3618	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
118284	chr19	35293301	35293700	+	0	NA	intron (NM_001199216, intron 1 of 10)	intron (NM_001199216, intron 1 of 10)	1339	NM_002361	4099		NM_002361	ENSG00000105695	MAG	GMA|S-MAG|SIGLEC-4A|SIGLEC4|SIGLEC4A|SPG75	myelin associated glycoprotein	protein-coding
37464	chr11	18280551	18281400	+	0	NA	intron (NM_181507, intron 22 of 22)	L1MB2|LINE|L1	14711	NM_199161	6288		NM_000331	ENSG00000173432	SAA1	PIG4|SAA|SAA2|TP53I4	serum amyloid A1	protein-coding
135518	chr2	162062321	162062830	+	0	NA	intron (NR_166824, intron 2 of 25)	MLT1E2|LTR|ERVL-MaLR	11640	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
156666	chr22	41647601	41647830	+	0	NA	intron (NM_001288976, intron 7 of 12)	AluJo|SINE|Alu	26420	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
29372	chr10	69817321	69817580	+	0	NA	intron (NM_001368884, intron 1 of 36)	L2a|LINE|L2	15544	NM_080805	1305		NM_005203	ENSG00000197467	COL13A1	CMS19|COLXIIIA1	collagen type XIII alpha 1 chain	protein-coding
72452	chr15	32342371	32344350	+	0	NA	promoter-TSS (NR_026771).2	promoter-TSS (NR_026771).2	-683	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
102714	chr17	76179421	76180530	+	0	NA	intron (NM_052916, intron 2 of 18)	intron (NM_052916, intron 2 of 18)	-38730	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
24964	chr10	2521601	2522000	+	0	NA	Intergenic	CpG	-20338	NR_136146	105376351		NR_136146		LINC02645	-	long intergenic non-protein coding RNA 2645	ncRNA
199870	chr6	127807771	127808430	+	0	NA	intron (NM_001164685, intron 4 of 6)	intron (NM_001164685, intron 4 of 6)	47088	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
130956	chr2	87519171	87520130	+	0	NA	intron (NR_146461, intron 2 of 2)	intron (NR_146461, intron 2 of 2)	49700	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
47179	chr12	792101	793150	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	39702	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
173152	chr4	6678951	6679250	+	0	NA	Intergenic	AluY|SINE|Alu	5025	NR_015433								
105923	chr18	3466451	3466550	+	0	NA	intron (NR_110428, intron 1 of 2)	intron (NR_110428, intron 1 of 2)	250	NR_110429	100505592		NR_110428	ENSG00000266835	GAPLINC	LINC01540	gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA	ncRNA
29901	chr10	73143151	73143450	+	0	NA	intron (NM_001135752, intron 9 of 14)	AluSg|SINE|Alu	-17093	NR_145776	109617000		NR_145776	ENSG00000221164	SNORA11F	-	small nucleolar RNA, H/ACA box 11F	snoRNA
199345	chr6	114975871	114976030	+	0	NA	Intergenic	L1PA2|LINE|L1	667885	NR_134602	105377962		NR_134602	ENSG00000228777	LINC02534	-	long intergenic non-protein coding RNA 2534	ncRNA
218087	chr8	38941551	38942050	+	0	NA	intron (NM_021623, intron 3 of 11)	MIRb|SINE|MIR	-32428	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
124910	chr2	8485901	8486880	+	0	NA	Intergenic	L1MB1|LINE|L1	97402	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
212552	chr7	128866921	128867430	+	0	NA	intron (NM_001195150, intron 1 of 1)	L2|LINE|L2	845	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
128050	chr2	47767651	47768380	+	0	NA	Intergenic	Intergenic	-15067	NM_001281493	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
208504	chr7	69596921	69597180	+	0	NA	non-coding (NR_148927, exon 1 of 3)	non-coding (NR_148927, exon 1 of 3)	574	NR_148926	100507468		NR_108105	ENSG00000234215	CT66	-	cancer/testis associated transcript 66	ncRNA
163864	chr3	52493901	52494330	+	0	NA	Intergenic	Intergenic	-1223	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
14331	chr1	143906901	143907200	+	0	NA	Intergenic	Intergenic	-1073	NM_001372105	440686		NM_001025303	ENSG00000273213	H3-7	H3-2|H3.7|HIST2H3PS2|p06	H3.7 histone (putative)	protein-coding
224078	chr9	4298851	4298950	+	0	NA	intron (NM_001042413, intron 1 of 10)	CpG	1168	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
66123	chr14	60152901	60153100	+	0	NA	exon (NM_001322280, exon 4 of 7)	exon (NM_001322280, exon 4 of 7)	12398	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
112261	chr19	5790491	5792580	+	0	NA	promoter-TSS (NM_001161619)	promoter-TSS (NM_001161619)	-372	NM_001161619	56931		NM_020175	ENSG00000141994	DUS3L	DUS3	dihydrouridine synthase 3 like	protein-coding
131503	chr2	96540571	96541100	+	0	NA	intron (NM_001319092, intron 1 of 6)	AluSz|SINE|Alu	2956	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
180268	chr5	1785951	1786050	+	0	NA	Intergenic	Intergenic	13837	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
232783	chr9	136693821	136694830	+	0	NA	Intergenic	Intergenic	-6868	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
211017	chr7	102391871	102392230	+	0	NA	intron (NR_038967, intron 4 of 8)	L2c|LINE|L2	-4313	NM_024653	79706		NM_024653	ENSG00000128563	PRKRIP1	C114|KRBOX3	PRKR interacting protein 1	protein-coding
130606	chr2	85894601	85894800	+	0	NA	Intergenic	MER51A|LTR|ERV1	5420	NR_110569	101928113		NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA
72234	chr15	30419151	30419250	+	0	NA	Intergenic	HAL1|LINE|L1	-4940	NM_001282484	101059918		NM_001282484	ENSG00000186399	GOLGA8R	-	golgin A8 family member R	protein-coding
28047	chr10	43257921	43258580	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	8815	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
6972	chr1	31785921	31786380	+	0	NA	Intergenic	Intergenic	-21810	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
118330	chr19	35559171	35559550	+	0	NA	intron (NM_000704, intron 7 of 21)	intron (NM_000704, intron 7 of 21)	4298	NM_000704	495		NM_000704	ENSG00000105675	ATP4A	ATP6A	ATPase H+/K+ transporting subunit alpha	protein-coding
230100	chr9	127568501	127569800	+	0	NA	promoter-TSS (NM_022833)	promoter-TSS (NM_022833)	-77	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
238661	chrX	154021201	154021600	+	0	NA	TTS (NM_001316337)	TTS (NM_001316337)	-1411	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
8659	chr1	41812051	41812700	+	0	NA	intron (NM_024503, intron 1 of 8)	FRAM|SINE|Alu	106547	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
150038	chr21	37369501	37369830	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	2108	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
144694	chr20	36459821	36460080	+	0	NA	intron (NM_001365621, intron 7 of 12)	intron (NM_001365621, intron 7 of 12)	-1518	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
156698	chr22	41681851	41683230	+	0	NA	5' UTR (NM_005008, exon 2 of 4)	5' UTR (NM_005008, exon 2 of 4)	6327	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
116618	chr19	18288071	18288230	+	0	NA	Intergenic	Intergenic	6073	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
26192	chr10	14546351	14547050	+	0	NA	intron (NM_031453, intron 2 of 4)	Tigger16a|DNA|TcMar-Tigger	1937	NM_001320739	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
211384	chr7	105013901	105014600	+	0	NA	promoter-TSS (NM_018682)	promoter-TSS (NM_018682)	45	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
202730	chr6	158939621	158940050	+	0	NA	Intergenic	CpG	51358	NR_160979	100130967		NM_001195032	ENSG00000203711	LINC02901	C6orf99	long intergenic non-protein coding RNA 2901	ncRNA
69108	chr14	92460901	92462050	+	0	NA	intron (NM_153647, intron 13 of 17)	MLT1B|LTR|ERVL-MaLR	-52306	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
39237	chr11	57658971	57659130	+	0	NA	intron (NM_006831, intron 1 of 2)	AluJb|SINE|Alu	1288	NM_006831	10978		NM_006831	ENSG00000172409	CLP1	HEAB|hClp1	cleavage factor polyribonucleotide kinase subunit 1	protein-coding
82872	chr16	21538101	21538300	+	0	NA	Intergenic	AluY|SINE|Alu	-17756	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
70920	chr14	104138421	104139180	+	0	NA	promoter-TSS (NM_015656)	promoter-TSS (NM_015656)	77	NM_015656	26153		NM_015656	ENSG00000066735	KIF26A	CDCBM11	kinesin family member 26A	protein-coding
25300	chr10	6200671	6202100	+	0	NA	intron (NM_001282630, intron 1 of 14)	CpG	-1547	NM_001363545	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
127857	chr2	45647451	45648180	+	0	NA	Intergenic	Intergenic	-3860	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
69460	chr14	94890371	94890530	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	119808	NR_144432	108868751		NR_144432		GSC-DT	DIGIT	GSC divergent transcript	ncRNA
214631	chr7	150738651	150739350	+	0	NA	intron (NM_001303630, intron 3 of 4)	intron (NM_001303630, intron 3 of 4)	1652	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
134360	chr2	136172221	136172480	+	0	NA	Intergenic	L1MA9|LINE|L1	-54201	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
200860	chr6	138588851	138589500	+	0	NA	Intergenic	Intergenic	-16606	NM_020464	57224		NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
218314	chr8	42692471	42693050	+	0	NA	Intergenic	Intergenic	-4606	NM_000749	1142		NM_000749	ENSG00000147432	CHRNB3	-	cholinergic receptor nicotinic beta 3 subunit	protein-coding
63775	chr14	21259821	21260480	+	0	NA	intron (NM_001077443, intron 1 of 7)	AluYa5|SINE|Alu	9292	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
217880	chr8	37859471	37860030	+	0	NA	3' UTR (NM_001002814, exon 6 of 6)	3' UTR (NM_001002814, exon 6 of 6)	-9889	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
150974	chr21	44328501	44329730	+	0	NA	3' UTR (NM_001271442, exon 8 of 8)	3' UTR (NM_001271442, exon 8 of 8)	9223	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
116485	chr19	18111471	18111850	+	0	NA	intron (NM_015016, intron 2 of 26)	AluSx1|SINE|Alu	-12844	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
63614	chr14	20623851	20624150	+	0	NA	Intergenic	L1P1|LINE|L1	17691	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
5062	chr1	24644901	24645730	+	0	NA	intron (NR_159390, intron 1 of 18)	intron (NR_159390, intron 1 of 18)	1736	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
64864	chr14	35296121	35296380	+	0	NA	intron (NM_001282232, intron 1 of 6)	MIR|SINE|MIR	3868	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
69495	chr14	95518271	95518980	+	0	NA	Intergenic	Intergenic	-1975	NM_001384284	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
35133	chr11	709271	709630	+	0	NA	exon (NM_022772, exon 2 of 21)	exon (NM_022772, exon 2 of 21)	-2367	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
180296	chr5	4195621	4195750	+	0	NA	Intergenic	Intergenic	-577796	NR_104619	101929153		NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
84548	chr16	30560501	30560700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2226	NM_001172679	92595		NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
69801	chr14	99200201	99200700	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	71747	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
49918	chr12	39620901	39621650	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1472	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
75008	chr15	64006851	64006950	+	0	NA	intron (NM_001385000, intron 2 of 11)	intron (NM_001385000, intron 2 of 11)	39585	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
224934	chr9	33023721	33023980	+	0	NA	intron (NM_001369001, intron 1 of 6)	intron (NM_001369001, intron 1 of 6)	1270	NR_160923	54840		NM_017692	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
96196	chr17	39751971	39752130	+	0	NA	Intergenic	Intergenic	12083	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
80489	chr16	2710221	2710880	+	0	NA	Intergenic	Intergenic	9674	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
196171	chr6	42568551	42568830	+	0	NA	intron (NM_001363705, intron 1 of 46)	AluY|SINE|Alu	4661	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
211230	chr7	102641121	102641380	+	0	NA	intron (NM_032959, intron 4 of 8)	intron (NM_032959, intron 4 of 8)	1541	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
174986	chr4	49651271	49651650	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	664818	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
30841	chr10	86503601	86503800	+	0	NA	intron (NM_015045, intron 2 of 18)	AluY|SINE|Alu	18084	NM_001318328	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
77762	chr15	85784901	85786630	+	0	NA	intron (NM_022480, intron 1 of 2)	intron (NM_022480, intron 1 of 2)	9160	NM_022480	64410		NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch like family member 25	protein-coding
165546	chr3	101381901	101382500	+	0	NA	intron (NM_001282803, intron 3 of 20)	AluJr4|SINE|Alu	-61625	NM_016247	50939		NM_016247	ENSG00000081148	IMPG2	IPM200|RP56|SPACRCAN|VMD5	interphotoreceptor matrix proteoglycan 2	protein-coding
76299	chr15	74317251	74317550	+	0	NA	intron (NM_025055, intron 11 of 18)	intron (NM_025055, intron 11 of 18)	-1159	NM_001287181	80125		NM_025055	ENSG00000140481	CCDC33	CC2D3|CT61|HP11097	coiled-coil domain containing 33	protein-coding
208165	chr7	64665521	64666870	+	0	NA	promoter-TSS (NR_104149)	promoter-TSS (NR_104149)	62	NM_001013746	51427		NM_016220	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
51345	chr12	51393821	51394600	+	0	NA	intron (NM_001258401, intron 1 of 24)	intron (NM_001258401, intron 1 of 24)	-2804	NM_007210	11226		NM_007210	ENSG00000139629	GALNT6	GALNAC-T6|GalNAcT6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding
205322	chr7	12403401	12404400	+	0	NA	promoter-TSS (NM_001135924)	promoter-TSS (NM_001135924)	-35	NM_001135924	221806		NM_174949	ENSG00000146530	VWDE	-	von Willebrand factor D and EGF domains	protein-coding
32754	chr10	104321151	104322130	+	0	NA	intron (NM_001272013, intron 1 of 1)	MIRb|SINE|MIR	-1724	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
524	chr1	1220671	1221030	+	0	NA	intron (NM_016547, intron 4 of 6)	intron (NM_016547, intron 4 of 6)	-6697	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
74020	chr15	52176801	52177200	+	0	NA	intron (NM_016194, intron 3 of 12)	L2|LINE|L2	2691	NM_001379343	10681		NM_006578	ENSG00000069966	GNB5	GB5|HG2E|IDDCA|LADCI|LDMLS1|LDMLS2|gbeta5	G protein subunit beta 5	protein-coding
223203	chr8	143583971	143584130	+	0	NA	intron (NM_001330646, intron 2 of 6)	MLT1D|LTR|ERVL-MaLR	-5720	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
27658	chr10	33027871	33028030	+	0	NA	Intergenic	Intergenic	-69720	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
58016	chr12	124390501	124390700	+	0	NA	intron (NM_001077261, intron 18 of 47)	intron (NM_001077261, intron 18 of 47)	-53358	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
22913	chr1	225899321	225899780	+	0	NA	Intergenic	Intergenic	-10404	NM_020997	10637		NM_020997	ENSG00000243709	LEFTY1	LEFTB|LEFTYB	left-right determination factor 1	protein-coding
176824	chr4	102557571	102557730	+	0	NA	intron (NM_001382625, intron 6 of 24)	intron (NM_001382625, intron 6 of 24)	-55164	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
24328	chr1	237806801	237807000	+	0	NA	intron (NM_001035, intron 99 of 104)	intron (NM_001035, intron 99 of 104)	-55275	NR_027247	100130331		NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
160426	chr3	28299601	28300100	+	0	NA	intron (NM_001331186, intron 3 of 4)	intron (NM_001331186, intron 3 of 4)	-48871	NM_001324169	152098		NM_001040432	ENSG00000206559	ZCWPW2	ZCW2	zinc finger CW-type and PWWP domain containing 2	protein-coding
175173	chr4	55948501	55950300	+	0	NA	intron (NM_025009, intron 1 of 25)	intron (NM_025009, intron 1 of 25)	455	NM_025009	9662		NM_014645	ENSG00000174799	CEP135	CEP4|KIAA0635|MCPH8	centrosomal protein 135	protein-coding
30148	chr10	74137871	74138250	+	0	NA	intron (NM_207012, intron 3 of 9)	intron (NM_207012, intron 3 of 9)	12768	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
1509	chr1	2801421	2802100	+	0	NA	promoter-TSS (NM_001242672).2	promoter-TSS (NM_001242672).2	-892	NM_001242672	100287898		NM_001242672	ENSG00000215912	TTC34	-	tetratricopeptide repeat domain 34	protein-coding
171056	chr3	195270321	195272150	+	0	NA	promoter-TSS (NM_152531)	promoter-TSS (NM_152531)	-76	NM_152531	152002		NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding
83897	chr16	28982451	28982750	+	0	NA	intron (NM_032038, intron 8 of 11)	MIR|SINE|MIR	-2203	NM_001014989	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
33960	chr10	124640601	124641980	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-62738	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
151788	chr22	18151271	18151430	+	0	NA	intron (NM_017414, intron 1 of 10)	intron (NM_017414, intron 1 of 10)	1180	NM_017414	11274		NM_017414	ENSG00000184979	USP18	ISG43|PTORCH2|UBP43	ubiquitin specific peptidase 18	protein-coding
169455	chr3	167750151	167750700	+	0	NA	intron (NM_005025, intron 1 of 8)	intron (NM_005025, intron 1 of 8)	14702	NM_005025	5274		NM_005025	ENSG00000163536	SERPINI1	HNS-S1|HNS-S2|PI12|neuroserpin	serpin family I member 1	protein-coding
32274	chr10	102104971	102105500	+	0	NA	Intergenic	Intergenic	9767	NM_003893	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
48785	chr12	11731351	11732480	+	0	NA	intron (NM_001987, intron 1 of 7)	MER81|DNA|hAT-Blackjack	82241	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
134736	chr2	144594651	144594950	+	0	NA	Intergenic	Intergenic	-70356	NR_136320	105373656		NR_136320		LINC02993	-	long intergenic non-protein coding RNA 2993	ncRNA
15142	chr1	148799821	148800080	+	0	NA	Intergenic	L1MB7|LINE|L1	-7981	NR_158170	100996517		NR_158170		SEC22B3P	SEC22B3	SEC22 homolog B3, pseudogene	pseudo
90619	chr17	1641401	1641950	+	0	NA	intron (NM_145350, intron 4 of 10).2	intron (NM_145350, intron 4 of 10).2	4057	NM_145350	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
60898	chr13	46159021	46159430	+	0	NA	intron (NM_002298, intron 2 of 15)	intron (NM_002298, intron 2 of 15)	22952	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
126245	chr2	27075051	27076080	+	0	NA	Intergenic	Intergenic	-3050	NM_007046	11117		NM_007046	ENSG00000138080	EMILIN1	EMI|EMILIN|HMN10|HMND10|gp115	elastin microfibril interfacer 1	protein-coding
231335	chr9	130173121	130173830	+	0	NA	intron (NM_014286, intron 1 of 7)	intron (NM_014286, intron 1 of 7)	1071	NM_014286	23413		NM_014286	ENSG00000107130	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
202366	chr6	157768051	157768580	+	0	NA	Intergenic	Intergenic	-54931	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
195244	chr6	36357771	36358330	+	0	NA	intron (NM_001207039, intron 6 of 6)	MLT1J1|LTR|ERVL-MaLR	-21162	NM_001010903	389384		NM_001010903	ENSG00000189325	BNIP5	C6orf222	BCL2 interacting protein 5	protein-coding
40054	chr11	62722071	62722230	+	0	NA	non-coding (NR_037946, exon 7 of 24)	non-coding (NR_037946, exon 7 of 24)	5234	NR_037946	100534595		NR_037946	ENSG00000234857	HNRNPUL2-BSCL2	-	HNRNPUL2-BSCL2 readthrough (NMD candidate)	ncRNA
197936	chr6	89827501	89827700	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2280	NM_001137667	9994		NM_012115	ENSG00000118412	CASP8AP2	CED-4|FLASH|RIP25	caspase 8 associated protein 2	protein-coding
133256	chr2	113381221	113381480	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-56341	NM_001330340	150472		NM_172003	ENSG00000136682	ZNG1B	CBWD2	Zn regulated GTPase metalloprotein activator 1B	protein-coding
120302	chr19	43473321	43474030	+	0	NA	Intergenic	L2b|LINE|L2	-8067	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
92904	chr17	16451151	16451450	+	0	NA	intron (NM_001113567, intron 2 of 3)	intron (NM_001113567, intron 2 of 3)	10074	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
33995	chr10	124678421	124679680	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-24978	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
228429	chr9	99818701	99820600	+	0	NA	intron (NR_109802, intron 1 of 6)	CpG	239	NR_109802	101928438		NR_109802	ENSG00000237461	LOC101928438	-	uncharacterized LOC101928438	ncRNA
164362	chr3	58111601	58112250	+	0	NA	intron (NM_001164319, intron 17 of 44)	intron (NM_001164319, intron 17 of 44)	58710	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
189280	chr5	172089101	172089300	+	0	NA	intron (NM_005990, intron 10 of 18)	intron (NM_005990, intron 10 of 18)	-82562	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
57737	chr12	122895501	122897730	+	0	NA	promoter-TSS (NM_024667)	promoter-TSS (NM_024667)	-491	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
172332	chr4	1690571	1690930	+	0	NA	Intergenic	Intergenic	-6437	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
118798	chr19	38427151	38427450	+	0	NA	promoter-TSS (NM_001146203)	promoter-TSS (NM_001146203)	-995	NM_001146203	115727		NM_052949	ENSG00000171777	RASGRP4	-	RAS guanyl releasing protein 4	protein-coding
78153	chr15	90412151	90412250	+	0	NA	intron (NM_003870, intron 2 of 37)	intron (NM_003870, intron 2 of 37)	23958	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
158718	chr3	8417171	8417600	+	0	NA	intron (NR_033378, intron 3 of 3)	intron (NR_033378, intron 3 of 3)	84273	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
40542	chr11	64311051	64312050	+	0	NA	intron (NM_004451, intron 2 of 6)	AluSc8|SINE|Alu	5323	NM_001282450	2101		NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen related receptor alpha	protein-coding
136434	chr2	176637301	176637500	+	0	NA	promoter-TSS (NR_110599)	promoter-TSS (NR_110599)	174	NR_040001	375295		NR_040001	ENSG00000163364	LINC01116	TALNEC2	long intergenic non-protein coding RNA 1116	ncRNA
147122	chr20	54067751	54067850	+	0	NA	TTS (NR_039913)	TTS (NR_039913)	685	NR_039913	100616225		NR_039913	ENSG00000265595	MIR4756	-	microRNA 4756	ncRNA
18386	chr1	161391721	161391980	+	0	NA	Intergenic	AluSz|SINE|Alu	-23974	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
60191	chr13	40373651	40374200	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	107081	NR_024506	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
174578	chr4	40238221	40239600	+	0	NA	intron (NM_001278364, intron 3 of 4)	intron (NM_001278364, intron 3 of 4)	41879	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
183968	chr5	88680021	88680850	+	0	NA	intron (NR_146284, intron 1 of 3)	CpG	-1987	NR_024383	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
199521	chr6	118718151	118718250	+	0	NA	Intergenic	Intergenic	-8125	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
114265	chr19	11568151	11568600	+	0	NA	Intergenic	Intergenic	-9139	NM_032377	84337		NM_032377	ENSG00000130165	ELOF1	ELF1	elongation factor 1	protein-coding
117304	chr19	19496221	19496750	+	0	NA	intron (NM_001384516, intron 8 of 12)	intron (NM_001384516, intron 8 of 12)	19063	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
62449	chr13	99345471	99345830	+	0	NA	intron (NR_026644, intron 7 of 8)	intron (NR_026644, intron 7 of 8)	-5770	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
127351	chr2	39127801	39128380	+	0	NA	Intergenic	Intergenic	-3222	NM_001382394	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
179358	chr4	183392401	183392600	+	0	NA	Intergenic	MIR3|SINE|MIR	-52136	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
45496	chr11	118625501	118625900	+	0	NA	intron (NM_001144759, intron 5 of 20)	intron (NM_001144759, intron 5 of 20)	18085	NM_001144759	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
216393	chr8	17929771	17930150	+	0	NA	intron (NR_148032, intron 2 of 38)	MER44A|DNA|TcMar-Tigger	6972	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
117031	chr19	18925501	18925700	+	0	NA	intron (NM_019070, intron 9 of 12)	intron (NM_019070, intron 9 of 12)	5885	NR_033677	54555		NM_019070	ENSG00000105671	DDX49	Dbp8|R27090_2	DEAD-box helicase 49	protein-coding
207530	chr7	44815201	44816700	+	0	NA	Intergenic	AluSp|SINE|Alu	19269	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
44954	chr11	116792921	116793180	+	0	NA	promoter-TSS (NM_001166598)	promoter-TSS (NM_001166598)	-630	NM_001166598	116519		NM_052968	ENSG00000110243	APOA5	APOAV|RAP3	apolipoprotein A5	protein-coding
111800	chr19	4454401	4454600	+	0	NA	intron (NM_025241, intron 1 of 10)	AluJr|SINE|Alu	801	NM_001171091	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
189334	chr5	172171601	172171880	+	0	NA	intron (NM_005990, intron 1 of 18)	(AATAG)n|Simple_repeat|Simple_repeat	16484	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
89012	chr16	88053051	88054150	+	0	NA	intron (NM_001173542, intron 11 of 12)	(CCA)n|Simple_repeat|Simple_repeat	47385	NR_120310	400553		NR_120310	ENSG00000205037	LOC400553	-	uncharacterized LOC400553	ncRNA
146309	chr20	49186151	49187300	+	0	NA	intron (NM_001322929, intron 1 of 14)	intron (NM_001322929, intron 1 of 14)	1609	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
210639	chr7	100467471	100467630	+	0	NA	intron (NM_001303043, intron 4 of 4)	intron (NM_001303043, intron 4 of 4)	-3290	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
123833	chr19	55223371	55224550	+	0	NA	Intergenic	(GCACAC)n|Simple_repeat|Simple_repeat	4803	NM_001372013	255043		NM_173804	ENSG00000180089	TMEM86B	-	transmembrane protein 86B	protein-coding
175720	chr4	77538271	77538700	+	0	NA	intron (NM_006419, intron 1 of 4)	intron (NM_006419, intron 1 of 4)	26732	NM_006419	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
2604	chr1	9941921	9942700	+	0	NA	promoter-TSS (NM_001297778)	promoter-TSS (NM_001297778)	-613	NM_001297778	64802		NM_022787	ENSG00000173614	NMNAT1	LCA9|NMNAT|PNAT1|SHILCA	nicotinamide nucleotide adenylyltransferase 1	protein-coding
88597	chr16	85586171	85586330	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-25159	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
181949	chr5	55025091	55025850	+	0	NA	intron (NM_002104, intron 2 of 4)	intron (NM_002104, intron 2 of 4)	1214	NM_002104	3003		NM_002104	ENSG00000113088	GZMK	TRYP2	granzyme K	protein-coding
189001	chr5	168383121	168383430	+	0	NA	intron (NM_015238, intron 2 of 22)	intron (NM_015238, intron 2 of 22)	91630	NM_001161661	23286		NM_015238	ENSG00000113645	WWC1	HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168	WW and C2 domain containing 1	protein-coding
63255	chr13	113946171	113946930	+	0	NA	Intergenic	Intergenic	-17559	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
128444	chr2	55600171	55600480	+	0	NA	intron (NM_020463, intron 3 of 14)	AluSp|SINE|Alu	17297	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
87505	chr16	71844221	71844600	+	0	NA	Intergenic	AluJr|SINE|Alu	-1566	NM_001137675	342371		NM_001137675	ENSG00000224470	ATXN1L	BOAT|BOAT1	ataxin 1 like	protein-coding
183640	chr5	80244651	80244950	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluSg|SINE|Alu	11248	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
107514	chr18	47982571	47982770	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-51524	NM_001135937	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
12608	chr1	109075051	109076450	+	0	NA	intron (NM_005645, intron 1 of 3)	intron (NM_005645, intron 1 of 3)	253	NM_005645	6884		NM_005645	ENSG00000197780	TAF13	MRT60|TAF(II)18|TAF2K|TAFII-18|TAFII18	TATA-box binding protein associated factor 13	protein-coding
9566	chr1	51735001	51735450	+	0	NA	intron (NM_148905, intron 1 of 18)	intron (NM_148905, intron 1 of 18)	5375	NM_001350210	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
36942	chr11	10930751	10932150	+	0	NA	Intergenic	CpG	73233	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
216099	chr8	11066821	11067200	+	0	NA	promoter-TSS (NR_134308)	promoter-TSS (NR_134308)	79	NR_134308	101929269		NR_134308	ENSG00000254839	LOC101929269	-	uncharacterized LOC101929269	ncRNA
134113	chr2	134120701	134121850	+	0	NA	intron (NM_001371457, intron 1 of 16)	CpG	1340	NM_001371457	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
74390	chr15	58911021	58911680	+	0	NA	intron (NR_135043, intron 4 of 18)	intron (NR_135043, intron 4 of 18)	22329	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
220903	chr8	106657461	106658780	+	0	NA	exon (NM_181354, exon 1 of 14)	exon (NM_181354, exon 1 of 14)	312	NM_181354	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
127678	chr2	43192071	43192580	+	0	NA	Intergenic	Intergenic	34281	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
47377	chr12	2681371	2681530	+	0	NA	intron (NM_001167625, intron 42 of 46).2	intron (NM_001167625, intron 42 of 46).2	-9230	NR_046579	100874235		NR_046579	ENSG00000256271	CACNA1C-AS2	-	CACNA1C antisense RNA 2	ncRNA
86154	chr16	57754451	57754750	+	0	NA	intron (NM_005886, intron 13 of 19)	intron (NM_005886, intron 13 of 19)	17752	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
138235	chr2	202870751	202872150	+	0	NA	promoter-TSS (NM_001288623)	promoter-TSS (NM_001288623)	22	NM_001288623	130026		NM_138468	ENSG00000163596	ICA1L	ALS2CR14|ALS2CR15	islet cell autoantigen 1 like	protein-coding
35880	chr11	2395721	2396230	+	0	NA	intron (NM_004356, intron 6 of 7)	intron (NM_004356, intron 6 of 7)	-4775	NM_001297658	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
179671	chr4	190017771	190018380	+	0	NA	Intergenic	CpG	9181	NM_001005217	448831		NM_001005217	ENSG00000205097	FRG2	FRG2A	FSHD region gene 2	protein-coding
221556	chr8	124997051	124997230	+	0	NA	non-coding (NR_134457, exon 2 of 2)	non-coding (NR_134457, exon 2 of 2)	1058	NR_134457	105375744		NR_134457	ENSG00000253513	SQLE-DT	lnc030	SQLE divergent transcript	ncRNA
165579	chr3	101569471	101570030	+	0	NA	Intergenic	L2a|LINE|L2	-4344	NM_001320399	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
216142	chr8	11480071	11480650	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-13607	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
237583	chrX	123777801	123778230	+	0	NA	Intergenic	Intergenic	-44963	NM_001081550	57187		NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|XLID12|dJ506G2.1|hTREX120	THO complex subunit 2	protein-coding
146003	chr20	46513371	46513600	+	0	NA	promoter-TSS (NM_001353813)	promoter-TSS (NM_001353813)	87	NM_001353820	55713		NM_018102	ENSG00000198185	ZNF334	-	zinc finger protein 334	protein-coding
139925	chr2	230776301	230776500	+	0	NA	intron (NM_016289, intron 2 of 8)	L1MD1|LINE|L1	62852	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
204184	chr7	2474321	2474580	+	0	NA	TTS (NM_001291784)	TTS (NM_001291784)	1933	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
113859	chr19	10648421	10648680	+	0	NA	Intergenic	Intergenic	5322	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
220653	chr8	101119071	101119230	+	0	NA	Intergenic	Intergenic	51089	NR_164368	115830329		NR_164368	ENSG00000261087	ZNNT1	-	ZNF706 neighboring transcript 1	ncRNA
74365	chr15	58732871	58733230	+	0	NA	intron (NM_001320570, intron 1 of 14)	intron (NM_001320570, intron 1 of 14)	16657	NM_001110	102		NM_001110	ENSG00000137845	ADAM10	AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz	ADAM metallopeptidase domain 10	protein-coding
1532	chr1	3271751	3271850	+	0	NA	intron (NM_199454, intron 3 of 16)	intron (NM_199454, intron 3 of 16)	143825	NR_036215	100422968		NR_036215	ENSG00000283572	MIR4251	-	microRNA 4251	ncRNA
24098	chr1	235416951	235417650	+	0	NA	intron (NM_001287801, intron 4 of 17).2	MER119|DNA|hAT-Charlie	49873	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
212635	chr7	129433601	129435300	+	0	NA	promoter-TSS (NM_020704)	promoter-TSS (NM_020704)	18	NM_020704	57464		NM_020704	ENSG00000128578	STRIP2	FAM40B|FAR11B	striatin interacting protein 2	protein-coding
46631	chr11	128651051	128651400	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-35310	NM_001271012	2313		NM_002017	ENSG00000151702	FLI1	BDPLT21|EWSR2|FLI-1|SIC-1	Fli-1 proto-oncogene, ETS transcription factor	protein-coding
217752	chr8	30810251	30810550	+	0	NA	intron (NM_001009552, intron 1 of 6)	AluSz6|SINE|Alu	2418	NM_001009552	5516		NM_004156	ENSG00000104695	PPP2CB	PP2Abeta|PP2CB	protein phosphatase 2 catalytic subunit beta	protein-coding
142242	chr20	3123001	3123800	+	0	NA	5' UTR (NM_014948, exon 2 of 5)	5' UTR (NM_014948, exon 2 of 5)	16489	NR_038395	100134015		NR_038395	ENSG00000235958	UBOX5-AS1	-	UBOX5 antisense RNA 1	ncRNA
81440	chr16	8866451	8866550	+	0	NA	intron (NM_001278260, intron 1 of 4)	intron (NM_001278260, intron 1 of 4)	928	NM_001278264	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
75173	chr15	64699071	64699230	+	0	NA	intron (NM_002537, intron 1 of 4)	(TC)n|Simple_repeat|Simple_repeat	4131	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
188518	chr5	155729201	155730030	+	0	NA	Intergenic	Intergenic	-597549	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
69286	chr14	93079221	93079680	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	11998	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
52965	chr12	57470171	57470400	+	0	NA	intron (NM_001160045, intron 9 of 9)	intron (NM_001160045, intron 9 of 9)	7582	NM_001319851	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
129775	chr2	71129551	71131300	+	0	NA	promoter-TSS (NM_032601)	promoter-TSS (NM_032601)	-196	NM_032601	84693		NM_032601	ENSG00000124370	MCEE	GLOD2|MCE|MMCE	methylmalonyl-CoA epimerase	protein-coding
7269	chr1	32368401	32368950	+	0	NA	intron (NM_018045, intron 9 of 10)	L1ME4a|LINE|L1	6136	NM_052841	81629		NM_052841	ENSG00000162526	TSSK3	SPOGA3|STK22C|STK22D|TSK3	testis specific serine kinase 3	protein-coding
141486	chr2	241097151	241097450	+	0	NA	exon (NM_182501, exon 3 of 4)	exon (NM_182501, exon 3 of 4)	4987	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
156283	chr22	40460301	40460850	+	0	NA	intron (NM_001282661, intron 4 of 13)	L2c|LINE|L2	2865	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
38929	chr11	47467171	47467530	+	0	NA	3' UTR (NM_001025596, exon 14 of 14)	3' UTR (NM_001025596, exon 14 of 14)	-18214	NM_032645	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
147297	chr20	57654121	57654780	+	0	NA	intron (NM_020182, intron 2 of 3)	intron (NM_020182, intron 2 of 3)	-34024	NM_001160419	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
47668	chr12	6332501	6334350	+	0	NA	exon (NM_001346091, exon 3 of 9)	exon (NM_001346091, exon 3 of 9)	8651	NM_001346091	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
194628	chr6	33574901	33575100	+	0	NA	intron (NM_001188, intron 4 of 5)	intron (NM_001188, intron 4 of 5)	5276	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
94243	chr17	28678821	28679480	+	0	NA	intron (NM_003170, intron 11 of 36)	AluSz|SINE|Alu	16945	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
116992	chr19	18892371	18892880	+	0	NA	intron (NM_021267, intron 2 of 7)	AluY|SINE|Alu	3533	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
156912	chr22	42271971	42272530	+	0	NA	intron (NR_036498, intron 1 of 1)	intron (NR_036498, intron 1 of 1)	-1597	NM_181492	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
202398	chr6	157865151	157865650	+	0	NA	intron (NM_016224, intron 1 of 17)	intron (NM_016224, intron 1 of 17)	42154	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
148416	chr20	63951671	63953050	+	0	NA	intron (NR_148442, intron 1 of 15)	intron (NR_148442, intron 1 of 15)	-1024	NR_027287	100113386		NR_027287	ENSG00000280213	UCKL1-AS1	UCKL1-AS|UCKL1AS|UCKL1OS	UCKL1 antisense RNA 1	ncRNA
103470	chr17	78343321	78344800	+	0	NA	Intergenic	Intergenic	15607	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
137815	chr2	200375301	200375500	+	0	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	66450	NM_001282744	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
153274	chr22	24152301	24152500	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-29087	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
118766	chr19	38379471	38379950	+	0	NA	intron (NM_002812, intron 4 of 6)	L2a|LINE|L2	5139	NM_002812	5714		NM_002812	ENSG00000099341	PSMD8	HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31	proteasome 26S subunit, non-ATPase 8	protein-coding
52990	chr12	57498051	57498380	+	0	NA	exon (NM_004990, exon 8 of 21)	exon (NM_004990, exon 8 of 21)	-9391	NM_001319850	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
69073	chr14	92026851	92026950	+	0	NA	intron (NM_001321851, intron 2 of 20)	intron (NM_001321851, intron 2 of 20)	13159	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
236410	chrX	71198121	71198600	+	0	NA	Intergenic	L2c|LINE|L2	-16852	NM_001097642	2705		NM_000166	ENSG00000169562	GJB1	CMTX|CMTX1|CX32	gap junction protein beta 1	protein-coding
181588	chr5	43328451	43328550	+	0	NA	Intergenic	L1PA6|LINE|L1	-15088	NM_001324224	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
210701	chr7	100578551	100578650	+	0	NA	intron (NM_001289934, intron 5 of 17)	intron (NM_001289934, intron 5 of 17)	-3381	NM_001289933								
79277	chr16	530321	531080	+	0	NA	intron (NM_005632, intron 1 of 13)	intron (NM_005632, intron 1 of 13)	2988	NM_005632	6650		NM_005632	ENSG00000103326	CAPN15	OGIN|SOLH	calpain 15	protein-coding
220754	chr8	102291151	102291580	+	0	NA	intron (NM_001282873, intron 34 of 58)	intron (NM_001282873, intron 34 of 58)	51914	NR_125415	101927221		NR_125415		UBR5-DT	UBR5-AS1	UBR5 divergent transcript	ncRNA
20998	chr1	202804201	202804400	+	0	NA	intron (NM_006618, intron 1 of 26)	intron (NM_006618, intron 1 of 26)	4121	NM_006618	10765		NM_006618	ENSG00000117139	KDM5B	CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1	lysine demethylase 5B	protein-coding
91081	chr17	3222521	3222780	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	7029	NM_014565	8383		NM_014565	ENSG00000172146	OR1A1	OR17-7	olfactory receptor family 1 subfamily A member 1	protein-coding
95089	chr17	34171301	34171600	+	0	NA	intron (NR_110748, intron 5 of 5)	MamGypLTR3a|LTR|Gypsy	12182	NR_110748	101927239		NR_110748	ENSG00000261156	LINC01989	-	long intergenic non-protein coding RNA 1989	ncRNA
183996	chr5	90476001	90476650	+	0	NA	intron (NM_001370351, intron 1 of 7)	intron (NM_001370351, intron 1 of 7)	1461	NM_001370353	10622		NM_006467	ENSG00000113356	POLR3G	C31|RPC32|RPC7	RNA polymerase III subunit G	protein-coding
209888	chr7	91909151	91909250	+	0	NA	Intergenic	L1PA2|LINE|L1	-28498	NM_001301134	7978		NM_006980	ENSG00000127989	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
224162	chr9	4982951	4983350	+	0	NA	Intergenic	Intergenic	-1936	NM_001322195	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
38205	chr11	36391101	36391530	+	0	NA	intron (NM_024841, intron 2 of 9)	intron (NM_024841, intron 2 of 9)	-9682	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
192164	chr6	17597471	17597630	+	0	NA	Intergenic	Intergenic	-2752	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
106321	chr18	12920821	12921980	+	0	NA	Intergenic	Intergenic	-26584	NM_031216	81929		NM_031216	ENSG00000085415	SEH1L	SEC13L|SEH1A|SEH1B|Seh1	SEH1 like nucleoporin	protein-coding
128007	chr2	47023221	47023900	+	0	NA	intron (NM_020458, intron 13 of 19)	MIRc|SINE|MIR	-81705	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
4813	chr1	23602001	23603050	+	0	NA	Intergenic	MIR3|SINE|MIR	-24809	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
100159	chr17	58614901	58615200	+	0	NA	intron (NM_198393, intron 8 of 32)	intron (NM_198393, intron 8 of 32)	-70722	NM_001368771	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
230157	chr9	127762321	127762580	+	0	NA	promoter-TSS (NM_001142531)	promoter-TSS (NM_001142531)	-10	NM_001142531	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
213313	chr7	135165751	135166050	+	0	NA	3' UTR (NM_001243751, exon 4 of 4)	3' UTR (NM_001243751, exon 4 of 4)	3574	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
98975	chr17	48726301	48727400	+	0	NA	exon (NM_006361, exon 2 of 2)	exon (NM_006361, exon 2 of 2)	1900	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
43500	chr11	78560971	78561130	+	0	NA	intron (NM_024678, intron 4 of 13)	intron (NM_024678, intron 4 of 13)	13814	NM_024678	79731		NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial	protein-coding
129466	chr2	69575101	69575500	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	-55129	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
34835	chr11	304801	305400	+	0	NA	Intergenic	MER4D0|LTR|ERV1	-3007	NM_006435	10581		NM_006435	ENSG00000185201	IFITM2	1-8D|DSPA2c	interferon induced transmembrane protein 2	protein-coding
119643	chr19	40809321	40809830	+	0	NA	non-coding (NR_144551, exon 2 of 2)	non-coding (NR_144551, exon 2 of 2)	1525	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
57571	chr12	122246601	122246800	+	0	NA	intron (NM_001351018, intron 6 of 12)	AluSx1|SINE|Alu	-19244	NM_019887	56616		NM_019887	ENSG00000184047	DIABLO	DFNA64|SMAC	diablo IAP-binding mitochondrial protein	protein-coding
221752	chr8	127763421	127764030	+	0	NA	Intergenic	Intergenic	27494	NM_002467	4609		NM_002467	ENSG00000136997	MYC	MRTL|MYCC|bHLHe39|c-Myc	MYC proto-oncogene, bHLH transcription factor	protein-coding
124617	chr2	1164151	1164580	+	0	NA	intron (NM_018968, intron 6 of 16)	intron (NM_018968, intron 6 of 16)	-212973	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
111678	chr19	4261421	4262850	+	0	NA	intron (NM_018074, intron 6 of 7)	intron (NM_018074, intron 6 of 7)	15055	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
118475	chr19	35897371	35897730	+	0	NA	intron (NM_001321831, intron 4 of 11)	intron (NM_001321831, intron 4 of 11)	2187	NM_001321831	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
179945	chr5	775771	776130	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	8779	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
217556	chr8	29349661	29351600	+	0	NA	promoter-TSS (NM_001394)	promoter-TSS (NM_001394)	54	NM_001394	1846		NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding
64	chr1	277771	278130	+	0	NA	Intergenic	L1M5|LINE|L1	-71353	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
27857	chr10	40798771	40798930	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1569195	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
69962	chr14	99737501	99737930	+	0	NA	promoter-TSS (NM_001375411)	promoter-TSS (NM_001375411)	-7	NM_001375411	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
70422	chr14	102025851	102026180	+	0	NA	intron (NM_001376, intron 43 of 77)	AluSc|SINE|Alu	61029	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
180029	chr5	1050551	1051050	+	0	NA	3' UTR (NM_006598, exon 24 of 24).2	3' UTR (NM_006598, exon 24 of 24).2	12174	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
39551	chr11	61118971	61119400	+	0	NA	intron (NM_001346456, intron 4 of 10)	intron (NM_001346456, intron 4 of 10)	16696	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
96013	chr17	39227371	39228150	+	0	NA	Intergenic	Intergenic	-1815	NM_001351360	342667		NM_198993	ENSG00000141750	STAC2	24b2|24b2/STAC2	SH3 and cysteine rich domain 2	protein-coding
21479	chr1	205657471	205658050	+	0	NA	TTS (NM_033102)	TTS (NM_033102)	22749	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
198181	chr6	96465871	96466600	+	0	NA	Intergenic	Intergenic	-55571	NM_015323	23376		NM_015323	ENSG00000014123	UFL1	KIAA0776|Maxer|NLBP|RCAD	UFM1 specific ligase 1	protein-coding
149159	chr21	17806101	17806830	+	0	NA	intron (NM_017447, intron 2 of 4)	intron (NM_017447, intron 2 of 4)	12891	NM_001100421	54149		NM_017447	ENSG00000154642	C21orf91	BTG3-7:1|C21orf14|C21orf38|CSSG1|EURL|YG81	chromosome 21 open reading frame 91	protein-coding
25471	chr10	6838101	6838400	+	0	NA	intron (NR_038291, intron 4 of 4)	intron (NR_038291, intron 4 of 4)	58652	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
63038	chr13	112966771	112967550	+	0	NA	TTS (NR_034002)	TTS (NR_034002)	1478	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
124789	chr2	7441901	7442480	+	0	NA	intron (NR_038432, intron 4 of 5)	AluYj4|SINE|Alu	20929	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
90311	chr17	1106121	1106780	+	0	NA	intron (NM_001322840, intron 2 of 22).2	intron (NM_001322840, intron 2 of 22).2	2652	NM_001092	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
58193	chr12	125186071	125186600	+	0	NA	promoter-TSS (NM_001366854)	promoter-TSS (NM_001366854)	-51	NM_001366854	114795		NM_052907	ENSG00000139364	TMEM132B	-	transmembrane protein 132B	protein-coding
132901	chr2	111395421	111395880	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	-74559	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA
64374	chr14	24139151	24139250	+	0	NA	TTS (NM_001281529)	TTS (NM_001281529)	2391	NM_001346877	51016		NM_016049	ENSG00000100908	EMC9	C14orf122|CGI-112|FAM158A	ER membrane protein complex subunit 9	protein-coding
30212	chr10	74853551	74854380	+	0	NA	intron (NM_012330, intron 3 of 17).2	intron (NM_012330, intron 3 of 17).2	27365	NM_001370137	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
42394	chr11	68962601	68963200	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	18086	NM_198923	116512		NM_198923	ENSG00000172938	MRGPRD	MRGD|TGR7	MAS related GPR family member D	protein-coding
83698	chr16	28470271	28470750	+	0	NA	intron (NM_001286109, intron 13 of 13)	G-rich|Low_complexity|Low_complexity	21564	NM_001286109	1201		NM_000086	ENSG00000188603	CLN3	BTN1|BTS|JNCL	CLN3 lysosomal/endosomal transmembrane protein, battenin	protein-coding
222060	chr8	130309371	130309750	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-13027	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
118562	chr19	36190721	36190980	+	0	NA	intron (NM_152477, intron 4 of 4)	AluSz|SINE|Alu	22729	NM_001366189	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
228204	chr9	97805171	97805330	+	0	NA	intron (NR_147055, intron 4 of 10)	AluSx3|SINE|Alu	47830	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
218251	chr8	42154901	42156480	+	0	NA	intron (NM_006803, intron 2 of 8)	intron (NM_006803, intron 2 of 8)	2627	NM_006803	10947		NM_006803	ENSG00000070718	AP3M2	AP47B|CLA20|P47B	adaptor related protein complex 3 subunit mu 2	protein-coding
176108	chr4	83032821	83033180	+	0	NA	Intergenic	Intergenic	-2183	NM_001330727	51138		NM_016129	ENSG00000138663	COPS4	CSN4|SGN4	COP9 signalosome subunit 4	protein-coding
190509	chr5	180493051	180493150	+	0	NA	Intergenic	AluSp|SINE|Alu	-1279	NM_001370472	57472		NM_015455	ENSG00000113300	CNOT6	CCR4|Ccr4a	CCR4-NOT transcription complex subunit 6	protein-coding
82362	chr16	15988651	15988950	+	0	NA	intron (NM_004996, intron 1 of 30)	AluJo|SINE|Alu	39184	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
132651	chr2	108734801	108735200	+	0	NA	intron (NM_006267, intron 4 of 28)	L2|LINE|L2	15518	NM_006267	5903		NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding
56779	chr12	120184071	120184430	+	0	NA	intron (NM_006836, intron 3 of 57)	intron (NM_006836, intron 3 of 57)	10465	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
119744	chr19	41274101	41274700	+	0	NA	intron (NM_144732, intron 4 of 14)	intron (NM_144732, intron 4 of 14)	9319	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
191111	chr6	4023251	4023350	+	0	NA	intron (NR_146785, intron 1 of 20)	intron (NR_146785, intron 1 of 20)	2000	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
165411	chr3	97940021	97940280	+	0	NA	intron (NM_153605, intron 19 of 21)	intron (NM_153605, intron 19 of 21)	32281	NM_153182	84864		NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
95437	chr17	36127321	36127780	+	0	NA	Intergenic	Intergenic	23723	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
134532	chr2	143669121	143669380	+	0	NA	intron (NM_018460, intron 12 of 13)	MIR|SINE|MIR	-267817	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
113283	chr19	8537101	8537300	+	0	NA	intron (NM_012335, intron 16 of 27)	intron (NM_012335, intron 16 of 27)	-23033	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
182025	chr5	55479901	55480100	+	0	NA	intron (NM_003711, intron 1 of 5)	intron (NM_003711, intron 1 of 5)	28926	NR_049869	100847019		NR_049869	ENSG00000265135	MIR5687	-	microRNA 5687	ncRNA
180247	chr5	1641201	1642130	+	0	NA	Intergenic	L1MEg|LINE|L1	-7660	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
3159	chr1	12603001	12603200	+	0	NA	intron (NM_004753, intron 1 of 5)	intron (NM_004753, intron 1 of 5)	-6487	NM_001324370	9249		NM_004753	ENSG00000162496	DHRS3	CNALPTC1|DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1	dehydrogenase/reductase 3	protein-coding
72950	chr15	40451001	40451700	+	0	NA	intron (NR_125372, intron 1 of 4)	intron (NR_125372, intron 1 of 4)	10397	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
132378	chr2	105770271	105771030	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	25587	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
10345	chr1	64923331	64923880	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	42944	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
180323	chr5	6377571	6379200	+	0	NA	exon (NM_032286, exon 1 of 4)	exon (NM_032286, exon 1 of 4)	162	NM_032286	84246		NM_032286	ENSG00000133398	MED10	L6|NUT2|TRG20	mediator complex subunit 10	protein-coding
233761	chrX	1400021	1400280	+	0	NA	promoter-TSS (NR_026711)	promoter-TSS (NR_026711)	-381	NR_026711	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
153992	chr22	30392521	30393080	+	0	NA	Intergenic	Intergenic	-4141	NM_033382	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
113912	chr19	10697501	10697700	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-3839	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
147279	chr20	57526401	57526730	+	0	NA	promoter-TSS (NM_001269040)	promoter-TSS (NM_001269040)	-913	NM_001269042	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
237055	chrX	103357001	103357200	+	0	NA	5' UTR (NM_001006612, exon 2 of 3)	5' UTR (NM_001006612, exon 2 of 3)	594	NM_001006614	51186		NM_016303	ENSG00000185222	TCEAL9	WBP5|WEX6	transcription elongation factor A like 9	protein-coding
18718	chr1	167458001	167458600	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	60229	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
116274	chr19	17716621	17716880	+	0	NA	Intergenic	Intergenic	-2730	NM_018174	55201		NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule associated protein 1S	protein-coding
67957	chr14	74839921	74840230	+	0	NA	Intergenic	Intergenic	36070	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
29862	chr10	72365671	72365830	+	0	NA	Intergenic	Intergenic	-10831	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
40746	chr11	64834351	64835130	+	0	NA	intron (NM_017525, intron 18 of 36)	MIR3|SINE|MIR	9913	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
145162	chr20	38845851	38846350	+	0	NA	intron (NM_001172735, intron 2 of 9)	L2|LINE|L2	40403	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
233490	chr9	137884451	137884830	+	0	NA	intron (NR_121583, intron 1 of 3)	L2c|LINE|L2	6858	NM_000718	774		NM_000718	ENSG00000148408	CACNA1B	BIII|CACNL1A5|CACNN|Cav2.2|DYT23|NEDNEH	calcium voltage-gated channel subunit alpha1 B	protein-coding
41048	chr11	65470751	65470850	+	0	NA	Intergenic	Intergenic	15514	NR_160547	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
148325	chr20	63752871	63753250	+	0	NA	intron (NM_025224, intron 3 of 4)	intron (NM_025224, intron 3 of 4)	13284	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
186916	chr5	139593971	139594530	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	32911	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
177517	chr4	118352801	118353450	+	0	NA	promoter-TSS (NM_003619)	promoter-TSS (NM_003619)	-122	NM_003619	8492		NM_003619	ENSG00000164099	PRSS12	BSSP-3|BSSP3|MRT1	serine protease 12	protein-coding
192505	chr6	25006051	25006900	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	35813	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
194386	chr6	32991121	32991380	+	0	NA	Intergenic	AluSg|SINE|Alu	18166	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
5265	chr1	25037101	25038330	+	0	NA	Intergenic	Intergenic	14212	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
28451	chr10	49180101	49180700	+	0	NA	intron (NM_001288741, intron 1 of 4)	L1MDa|LINE|L1	7991	NM_001353331	170371		NM_001010863	ENSG00000204161	TMEM273	C10orf128	transmembrane protein 273	protein-coding
216077	chr8	10805251	10806430	+	0	NA	intron (NM_001284356, intron 5 of 5)	intron (NM_001284356, intron 5 of 5)	19603	NR_031711	100302166		NR_031711	ENSG00000283210	MIR1322	MIRN1322|hsa-mir-1322	microRNA 1322	ncRNA
57620	chr12	122499671	122501550	+	0	NA	5' UTR (NM_001350936, exon 1 of 13)	5' UTR (NM_001350936, exon 1 of 13)	322	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
121031	chr19	45808471	45809030	+	0	NA	intron (NM_030785, intron 2 of 5)	AluY|SINE|Alu	6558	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
213019	chr7	131023121	131023900	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	83520	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
9136	chr1	45492671	45493450	+	0	NA	TTS (NM_001358407)	TTS (NM_001358407)	-1897	NM_001320800	10420		NM_007170	ENSG00000070759	TESK2	-	testis associated actin remodelling kinase 2	protein-coding
67435	chr14	70646701	70647500	+	0	NA	intron (NM_015351, intron 1 of 2)	MER45B|DNA|hAT-Tip100	5184	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
30724	chr10	83680321	83680820	+	0	NA	Intergenic	Intergenic	-3481	NR_134317	105378397		NR_134317	ENSG00000233945	LINC02650	-	long intergenic non-protein coding RNA 2650	ncRNA
102155	chr17	75113801	75115450	+	0	NA	3' UTR (NM_001304273, exon 3 of 3)	3' UTR (NM_001304273, exon 3 of 3)	4656	NM_001304273	79637		NM_024585	ENSG00000125449	ARMC7	-	armadillo repeat containing 7	protein-coding
177491	chr4	114005771	114006200	+	0	NA	Intergenic	LTR90A|LTR|LTR	-26338	NM_024590	79642		NM_024590	ENSG00000180801	ARSJ	ASJ	arylsulfatase family member J	protein-coding
168863	chr3	152286971	152287530	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-11764	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
129498	chr2	69625121	69625830	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	18263	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
203503	chr7	613401	613800	+	0	NA	intron (NM_001164759, intron 4 of 10)	intron (NM_001164759, intron 4 of 10)	10202	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
121304	chr19	46736571	46736730	+	0	NA	intron (NM_001039877, intron 4 of 17)	intron (NM_001039877, intron 4 of 17)	-9407	NM_024301	79147		NM_024301	ENSG00000181027	FKRP	FKTR|LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
111351	chr19	3668051	3668580	+	0	NA	intron (NM_001300849, intron 1 of 16)	MLT1D|LTR|ERVL-MaLR	32153	NM_001300849	23396		NM_012398	ENSG00000186111	PIP5K1C	LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma	phosphatidylinositol-4-phosphate 5-kinase type 1 gamma	protein-coding
219729	chr8	81037821	81039300	+	0	NA	intron (NM_018440, intron 2 of 8)	intron (NM_018440, intron 2 of 8)	73508	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
54350	chr12	89694921	89695430	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	13663	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
2421	chr1	9593321	9593880	+	0	NA	intron (NM_001130924, intron 1 of 10)	intron (NM_001130924, intron 1 of 10)	4689	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
165597	chr3	101653821	101654080	+	0	NA	intron (NM_014415, intron 8 of 10)	FLAM_C|SINE|Alu	-22480	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
177760	chr4	122666221	122666480	+	0	NA	intron (NR_104126, intron 10 of 10)	intron (NR_104126, intron 10 of 10)	-45284	NM_021803	59067		NM_021803	ENSG00000138684	IL21	CVID11|IL-21|Za11	interleukin 21	protein-coding
135740	chr2	169547651	169547750	+	0	NA	intron (NM_001322048, intron 6 of 13)	AluSx3|SINE|Alu	26165	NM_024622	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
7792	chr1	36242401	36242600	+	0	NA	intron (NM_001321471, intron 2 of 12)	AluY|SINE|Alu	18057	NM_005119	9967		NM_005119	ENSG00000054118	THRAP3	BCLAF2|TRAP150	thyroid hormone receptor associated protein 3	protein-coding
99866	chr17	56297071	56297430	+	0	NA	intron (NM_001370326, intron 3 of 20)	intron (NM_001370326, intron 3 of 20)	143775	NM_153228	162282		NM_153228	ENSG00000153930	ANKFN1	-	ankyrin repeat and fibronectin type III domain containing 1	protein-coding
127800	chr2	44310371	44310530	+	0	NA	intron (NM_000341, intron 7 of 9)	L1MB4|LINE|L1	34970	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
95955	chr17	39069271	39069680	+	0	NA	intron (NM_020405, intron 13 of 13)	intron (NM_020405, intron 13 of 13)	12456	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
46339	chr11	125517351	125517450	+	0	NA	Intergenic	Intergenic	-21090	NM_022549	9638		NM_005103	ENSG00000149557	FEZ1	UNC-76	fasciculation and elongation protein zeta 1	protein-coding
156859	chr22	42070121	42071850	+	0	NA	promoter-TSS (NM_001362848)	promoter-TSS (NM_001362848)	-143	NM_001362850	4668		NM_000262	ENSG00000198951	NAGA	D22S674|GALB	alpha-N-acetylgalactosaminidase	protein-coding
1162	chr1	2207401	2208530	+	0	NA	promoter-TSS (NM_001146310)	promoter-TSS (NM_001146310)	-232	NM_001146310	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
226405	chr9	70415601	70416180	+	0	NA	Intergenic	Intergenic	-1233	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
37297	chr11	14734851	14735200	+	0	NA	intron (NM_001363569, intron 1 of 15)	L1MC5a|LINE|L1	91221	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
46137	chr11	123042851	123043150	+	0	NA	Intergenic	Intergenic	15156	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
199608	chr6	119328301	119328700	+	0	NA	intron (NM_005907, intron 2 of 12)	intron (NM_005907, intron 2 of 12)	21261	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
213160	chr7	131557751	131558180	+	0	NA	Intergenic	CpG	-1337	NM_005397	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
111857	chr19	4599871	4600030	+	0	NA	Intergenic	AluSq2|SINE|Alu	-39566	NM_152362	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
215991	chr8	8880851	8881350	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	12530	NM_004225	9258		NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1|ROCO4	multifunctional ROCO family signaling regulator 1	protein-coding
113666	chr19	10386771	10386930	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6278	NM_001385201	7297		NM_003331	ENSG00000105397	TYK2	IMD35|JTK1	tyrosine kinase 2	protein-coding
172689	chr4	2757621	2758080	+	0	NA	Intergenic	Intergenic	-1514	NM_024309	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
108356	chr18	67468071	67468300	+	0	NA	Intergenic	Intergenic	-48361	NR_033921	643542		NR_033921	ENSG00000265533	DSEL-AS1	-	DSEL antisense RNA 1	ncRNA
42024	chr11	67425621	67426150	+	0	NA	TTS (NM_020811)	TTS (NM_020811)	-2609	NM_003952	6199		NM_003952	ENSG00000175634	RPS6KB2	KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb	ribosomal protein S6 kinase B2	protein-coding
12807	chr1	109873571	109873730	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-37199	NM_172212	1435		NM_000757	ENSG00000184371	CSF1	CSF-1|MCSF|PG-M-CSF	colony stimulating factor 1	protein-coding
106545	chr18	21602551	21603100	+	0	NA	Intergenic	Intergenic	-2121	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
228810	chr9	111926121	111927250	+	0	NA	intron (NM_003358, intron 5 of 8)	intron (NM_003358, intron 5 of 8)	-5415	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
227384	chr9	89508721	89508980	+	0	NA	Intergenic	HAL1ME|LINE|L1	-10737	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
19985	chr1	185041501	185042430	+	0	NA	Intergenic	L2a|LINE|L2	-3593	NM_007212	6045		NM_007212	ENSG00000121481	RNF2	BAP-1|BAP1|DING|HIPI3|LUSYAM|RING1B|RING2	ring finger protein 2	protein-coding
14639	chr1	145486951	145488150	+	0	NA	Intergenic	CpG	-81772	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
199958	chr6	127933971	127935300	+	0	NA	Intergenic	Intergenic	-16004	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
186662	chr5	138594601	138595230	+	0	NA	Intergenic	LTR78|LTR|ERV1	-19514	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
225694	chr9	36503851	36504550	+	0	NA	Intergenic	Intergenic	-68662	NR_046337	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
67612	chr14	72721121	72721580	+	0	NA	intron (NM_001280544, intron 5 of 9)	intron (NM_001280544, intron 5 of 9)	171299	NM_001280544	8110		NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4|SMARCG3	double PHD fingers 3	protein-coding
172560	chr4	2415401	2415600	+	0	NA	intron (NM_020972, intron 1 of 12)	intron (NM_020972, intron 1 of 12)	3145	NM_020972	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
150127	chr21	37561371	37561730	+	0	NA	Intergenic	Intergenic	141251	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
221880	chr8	128538921	128539180	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	25629	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
35705	chr11	1929101	1929380	+	0	NA	intron (NM_001367846, intron 9 of 17)	CpG	6409	NM_001367843	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
123443	chr19	54131051	54131530	+	0	NA	intron (NM_015629, intron 13 of 13)	intron (NM_015629, intron 13 of 13)	-6472	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
52492	chr12	56006101	56006300	+	0	NA	TTS (NM_000456)	TTS (NM_000456)	-1304	NM_001351091	64375		NM_022465	ENSG00000123411	IKZF4	EOS|ZNFN1A4	IKAROS family zinc finger 4	protein-coding
145078	chr20	38647971	38648530	+	0	NA	intron (NM_001164431, intron 13 of 14)	intron (NM_001164431, intron 13 of 14)	46441	NM_001164431	343578		NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
164530	chr3	63935621	63935880	+	0	NA	intron (NM_001177387, intron 3 of 12)	Tigger8|DNA|TcMar-Tigger	23638	NM_001377406	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
192932	chr6	27751771	27753620	+	0	NA	Intergenic	AluSq|SINE|Alu	-9049	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
59797	chr13	30355371	30355950	+	0	NA	intron (NR_024464, intron 4 of 4)	intron (NR_024464, intron 4 of 4)	18254	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
77566	chr15	84978851	84979550	+	0	NA	Intergenic	Intergenic	-1267	NM_001243137	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
73764	chr15	45462811	45464680	+	0	NA	Intergenic	(ACC)n|Simple_repeat|Simple_repeat	30695	NR_030599	100126311		NR_030599	ENSG00000284386	MIR147B	MIRN147B|mir-147b	microRNA 147b	ncRNA
210382	chr7	99786871	99787030	+	0	NA	Intergenic	Intergenic	-2766	NM_017460	1576		NM_017460	ENSG00000160868	CYP3A4	CP33|CP34|CYP3A|CYP3A3|CYPIIIA3|CYPIIIA4|HLP|NF-25|P450C3|P450PCN1|VDDR3	cytochrome P450 family 3 subfamily A member 4	protein-coding
47867	chr12	6646901	6647600	+	0	NA	intron (NM_032489, intron 1 of 9)	CpG	182	NM_032489	84519		NM_032489	ENSG00000111644	ACRBP	CT23|OY-TES-1|SP32	acrosin binding protein	protein-coding
31154	chr10	90861921	90862450	+	0	NA	Intergenic	Intergenic	-4146	NM_019860	3363		NM_000872	ENSG00000148680	HTR7	5-HT7	5-hydroxytryptamine receptor 7	protein-coding
207362	chr7	44101071	44101230	+	0	NA	Intergenic	Intergenic	-3195	NM_001129	165		NM_001129	ENSG00000106624	AEBP1	ACLP	AE binding protein 1	protein-coding
165742	chr3	105700671	105701230	+	0	NA	intron (NM_001321811, intron 11 of 16)	intron (NM_001321811, intron 11 of 16)	166641	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
134655	chr2	144450651	144451150	+	0	NA	intron (NM_014795, intron 2 of 9)	AluSx1|SINE|Alu	-68714	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
36440	chr11	5280671	5280830	+	0	NA	Intergenic	Intergenic	-10805	NM_005330	3046		NM_005330	ENSG00000213931	HBE1	HBE	hemoglobin subunit epsilon 1	protein-coding
158273	chr22	50337971	50339400	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-4642	NM_001351647	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
74875	chr15	63577571	63577930	+	0	NA	intron (NR_046342, intron 12 of 15)	AluSc5|SINE|Alu	-19637	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
231470	chr9	131334671	131335030	+	0	NA	Intergenic	Intergenic	-38801	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
53477	chr12	66140771	66141130	+	0	NA	intron (NM_001282606, intron 6 of 7)	L1MEc|LINE|L1	10199	NR_125724	103625681		NR_125724	ENSG00000239335	LLPH-DT	LLPH-AS1	LLPH divergent transcript	ncRNA
227230	chr9	89179971	89180330	+	0	NA	Intergenic	Intergenic	-1332	NM_016848	53358		NM_016848	ENSG00000148082	SHC3	N-Shc|NSHC|RAI|SHCC	SHC adaptor protein 3	protein-coding
28110	chr10	43399321	43400050	+	0	NA	intron (NM_001098204, intron 1 of 3)	intron (NM_001098204, intron 1 of 3)	-2339	NM_001098207	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
188740	chr5	157540401	157541380	+	0	NA	intron (NM_033274, intron 3 of 22)	L3|LINE|CR1	34885	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
261	chr1	920701	921650	+	0	NA	non-coding (NR_168405, exon 5 of 5)	non-coding (NR_168405, exon 5 of 5)	-1483	NR_026874	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
81942	chr16	11795251	11795800	+	0	NA	intron (NM_014153, intron 1 of 22)	AluSx1|SINE|Alu	1733	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
32046	chr10	101040801	101041830	+	0	NA	TTS (NR_157572)	TTS (NR_157572)	10076	NM_030971	81855		NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3|SLC56A3	sideroflexin 3	protein-coding
142126	chr20	2695271	2695600	+	0	NA	intron (NR_138537, intron 2 of 17)	intron (NR_138537, intron 2 of 17)	2557	NM_001110514	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
151972	chr22	19142071	19142830	+	0	NA	intron (NR_134304, intron 3 of 9)	intron (NR_134304, intron 3 of 9)	2201	NR_134304	8220		NM_022719	ENSG00000100056	ESS2	DGCR13|DGCR14|DGS-H|DGS-I|DGSH|DGSI|ES2|ESS-2|Es2el|bis1	ess-2 splicing factor homolog	protein-coding
220115	chr8	94612901	94613150	+	0	NA	Intergenic	Intergenic	26442	NR_034034	100288748		NR_034034	ENSG00000261437	LINC02894	-	long intergenic non-protein coding RNA 2894	ncRNA
197705	chr6	85676101	85676980	+	0	NA	TTS (NR_003038)	TTS (NR_003038)	828	NR_002743	26799		NR_002743		SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
172717	chr4	2801521	2802580	+	0	NA	intron (NM_001122681, intron 1 of 12)	AluSz|SINE|Alu	8965	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
177336	chr4	109817671	109817830	+	0	NA	intron (NM_032993, intron 2 of 6)	MIR|SINE|MIR	1988	NM_018983	54433		NM_018983	ENSG00000109534	GAR1	NOLA1	GAR1 ribonucleoprotein	protein-coding
136844	chr2	185424901	185425330	+	0	NA	Intergenic	L1PA2|LINE|L1	-258043	NR_136319	105373782		NR_136319		LOC105373782	-	uncharacterized LOC105373782	ncRNA
225793	chr9	37503501	37504750	+	0	NA	TTS (NM_022490)	TTS (NM_022490)	18177	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
162319	chr3	47472671	47473080	+	0	NA	intron (NM_001320044, intron 1 of 19)	AluSp|SINE|Alu	3066	NM_012235	22937		NM_012235	ENSG00000114650	SCAP	-	SREBF chaperone	protein-coding
134905	chr2	149572251	149572550	+	0	NA	intron (NM_015702, intron 6 of 7)	L1MEc|LINE|L1	-14958	NR_110240	101929231		NR_110240	ENSG00000231969	MMADHC-DT	-	MMADHC divergent transcript	ncRNA
84306	chr16	30094001	30094400	+	0	NA	intron (NM_031477, intron 3 of 3)	MIRc|SINE|MIR	2013	NM_001145524	83719		NM_031477	ENSG00000090238	YPEL3	-	yippee like 3	protein-coding
115141	chr19	14390001	14390750	+	0	NA	intron (NM_001025160, intron 3 of 18)	AluSx|SINE|Alu	8931	NM_078481	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
216226	chr8	12183771	12183930	+	0	NA	intron (NR_003494, intron 5 of 5)	intron (NR_003494, intron 5 of 5)	-1886	NR_146925	619423		NR_146925		FAM85A	-	family with sequence similarity 85 member A	ncRNA
127214	chr2	38593601	38594130	+	0	NA	intron (NM_138394, intron 1 of 12)	AluSg7|SINE|Alu	9063	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
60697	chr13	43879051	43880220	+	0	NA	promoter-TSS (NM_001350645)	promoter-TSS (NM_001350645)	62	NM_001350638	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
158540	chr3	3800871	3801030	+	0	NA	promoter-TSS (NR_149025)	promoter-TSS (NR_149025)	-75	NR_149025	100130207		NR_149025	ENSG00000144455	LOC100130207	-	uncharacterized LOC100130207	ncRNA
84455	chr16	30428371	30428530	+	0	NA	intron (NR_134470, intron 2 of 2)	intron (NR_134470, intron 2 of 2)	1350	NR_134471	79077		NM_024096	ENSG00000179958	DCTPP1	CDA03|RS21C6|XTP3TPA	dCTP pyrophosphatase 1	protein-coding
55645	chr12	107164421	107164680	+	0	NA	Intergenic	MIR|SINE|MIR	-71001	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
48800	chr12	11979951	11980250	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	-69761	NM_001370269	79370		NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
13956	chr1	120357061	120357730	+	0	NA	Intergenic	MIRc|SINE|MIR	-57632	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
194501	chr6	33276811	33279150	+	0	NA	exon (NM_003782, exon 1 of 1).3	exon (NM_003782, exon 1 of 1).3	857	NM_003782	8705		NM_003782	ENSG00000235863	B3GALT4	BETA3GALT4|GALT2|GALT4	beta-1,3-galactosyltransferase 4	protein-coding
94284	chr17	28717121	28718430	+	0	NA	promoter-TSS (NM_001144942)	promoter-TSS (NM_001144942)	93	NM_001144942	83871		NM_031934	ENSG00000109113	RAB34	NARR|OFD20|RAB39|RAH	RAB34, member RAS oncogene family	protein-coding
56259	chr12	112004821	112005080	+	0	NA	intron (NM_001193453, intron 2 of 9)	U6|snRNA|snRNA	8215	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
201256	chr6	144130901	144131100	+	0	NA	Intergenic	Intergenic	-19517	NM_003764	8676		NM_003764	ENSG00000135604	STX11	FHL4|HLH4|HPLH4	syntaxin 11	protein-coding
66316	chr14	61414651	61415300	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	93532	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
184021	chr5	91313251	91313350	+	0	NA	intron (NR_103548, intron 2 of 4)	MamRTE1|LINE|RTE-BovB	1102	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
222119	chr8	131913501	131914730	+	0	NA	intron (NM_001323555, intron 1 of 22)	intron (NM_001323555, intron 1 of 22)	-2658	NM_001323556	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
162013	chr3	46442751	46443150	+	0	NA	intron (NM_002343, intron 13 of 16)	intron (NM_002343, intron 13 of 16)	-19283	NR_151704	105377068		NR_151704	ENSG00000283646	LINC02009	-	long intergenic non-protein coding RNA 2009	ncRNA
15218	chr1	149444871	149445030	+	0	NA	intron (NM_001364012, intron 2 of 4)	intron (NM_001364012, intron 2 of 4)	-30948	NM_001351365	101060226		NM_001351365	ENSG00000271383	NBPF19	-	NBPF member 19	protein-coding
49852	chr12	34021751	34023000	+	0	NA	promoter-TSS (NM_032834)	promoter-TSS (NM_032834)	-121	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
103335	chr17	77997421	77998080	+	0	NA	Intergenic	AluY|SINE|Alu	-6487	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
148541	chr20	64161901	64162230	+	0	NA	Intergenic	Intergenic	-2387	NM_004535	4661		NM_004535	ENSG00000196132	MYT1	C20orf36|MTF1|MYTI|NZF2|PLPB1|ZC2H2C1|ZC2HC4A	myelin transcription factor 1	protein-coding
26004	chr10	12129021	12130930	+	0	NA	TTS (NR_039699)	TTS (NR_039699)	298	NM_018144	55176		NM_018144	ENSG00000065665	SEC61A2	-	SEC61 translocon subunit alpha 2	protein-coding
87673	chr16	74603271	74603630	+	0	NA	intron (NM_001145667, intron 1 of 25)	intron (NM_001145667, intron 1 of 25)	3664	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
160315	chr3	27521551	27521850	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-37316	NM_001321103	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
48461	chr12	9752971	9753430	+	0	NA	3' UTR (NM_001781, exon 5 of 5)	3' UTR (NM_001781, exon 5 of 5)	7701	NM_001781	969		NM_001781	ENSG00000110848	CD69	AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3	CD69 molecule	protein-coding
44230	chr11	96389071	96390550	+	0	NA	promoter-TSS (NM_003772)	promoter-TSS (NM_003772)	6	NM_001363594	79780		NM_014148	ENSG00000149231	CCDC82	HSPC048	coiled-coil domain containing 82	protein-coding
120781	chr19	45438751	45438850	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluSp|SINE|Alu	2146	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
157025	chr22	42553451	42554750	+	0	NA	intron (NM_001284334, intron 1 of 9)	CpG	144	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
80037	chr16	1953771	1954330	+	0	NA	exon (NM_005061, exon 2 of 10)	exon (NM_005061, exon 2 of 10)	639	NM_005061	6123		NM_005061	ENSG00000140986	RPL3L	CMD2D	ribosomal protein L3 like	protein-coding
183947	chr5	88142401	88143130	+	0	NA	Intergenic	Intergenic	126080	NM_153354	153396		NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
107963	chr18	58438051	58438150	+	0	NA	Intergenic	Intergenic	-12974	NR_029667	406906		NR_029667	ENSG00000284440	MIR122	MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A|mir-122	microRNA 122	ncRNA
110983	chr19	2983771	2984130	+	0	NA	intron (NM_001143986, intron 5 of 16)	intron (NM_001143986, intron 5 of 16)	6386	NR_138612	79816		NM_024760	ENSG00000104953	TLE6	GRG6|OZEMA15|PREMBL	TLE family member 6, subcortical maternal complex member	protein-coding
167184	chr3	128133151	128133750	+	0	NA	intron (NM_001319086, intron 1 of 9)	L1MA3|LINE|L1	-9638	NM_003707	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
113698	chr19	10415821	10417230	+	0	NA	promoter-TSS (NM_001243121)	promoter-TSS (NM_001243121)	-248	NM_001243121	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
153618	chr22	28443471	28443730	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-16269	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
128834	chr2	63444571	63444930	+	0	NA	intron (NR_148704, intron 7 of 18)	intron (NR_148704, intron 7 of 18)	-6743	NR_122106	51057		NM_015910	ENSG00000143951	WDPCP	BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ	WD repeat containing planar cell polarity effector	protein-coding
80814	chr16	3457271	3458930	+	0	NA	promoter-TSS (NM_001083600)	promoter-TSS (NM_001083600)	55	NM_001317097	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
236829	chrX	79185051	79185400	+	0	NA	Intergenic	Intergenic	40537	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
150292	chr21	41933301	41933700	+	0	NA	intron (NM_015500, intron 2 of 13)	intron (NM_015500, intron 2 of 13)	-6797	NM_199050	25966		NM_015500	ENSG00000157617	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium dependent domain containing 2	protein-coding
106827	chr18	24004171	24004730	+	0	NA	intron (NR_110796, intron 3 of 5)	intron (NR_110796, intron 3 of 5)	-10304	NM_001243425	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
170685	chr3	187750851	187750950	+	0	NA	Intergenic	Intergenic	-5432	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
110212	chr19	1751071	1751230	+	0	NA	Intergenic	Intergenic	-2356	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
33462	chr10	119053271	119053630	+	0	NA	intron (NM_003750, intron 14 of 21)	AluJo|SINE|Alu	6688	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
21600	chr1	206555001	206555830	+	0	NA	intron (NM_182663, intron 2 of 5)	intron (NM_182663, intron 2 of 5)	-1749	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
9294	chr1	46446871	46447430	+	0	NA	intron (NR_121680, intron 2 of 2)	intron (NR_121680, intron 2 of 2)	2554	NR_121680	101929651		NR_121680	ENSG00000224863	LINC01398	-	long intergenic non-protein coding RNA 1398	ncRNA
147246	chr20	57420721	57422250	+	0	NA	Intergenic	Intergenic	-28429	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
227017	chr9	83819571	83820000	+	0	NA	Intergenic	Intergenic	-1948	NM_001135953	80318		NM_025211	ENSG00000165113	GKAP1	FKSG21|GKAP42	G kinase anchoring protein 1	protein-coding
212756	chr7	129932621	129932880	+	0	NA	intron (NM_001202498, intron 1 of 6)	AluY|SINE|Alu	20210	NM_003344	7328		NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding
153485	chr22	26377451	26377750	+	0	NA	intron (NM_001184775, intron 14 of 15)	intron (NM_001184775, intron 14 of 15)	-51660	NM_020437	57168		NM_020437	ENSG00000128203	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
145934	chr20	46026321	46026580	+	0	NA	intron (NM_001134771, intron 1 of 25)	intron (NM_001134771, intron 1 of 25)	-2765	NM_020708	57468		NM_020708	ENSG00000124140	SLC12A5	DEE34|EIEE34|EIG14|KCC2|hKCC2	solute carrier family 12 member 5	protein-coding
104151	chr17	80390501	80390700	+	0	NA	intron (NM_001256071, intron 67 of 67)	AluSz6|SINE|Alu	-24567	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
170418	chr3	185585521	185587250	+	0	NA	promoter-TSS (NM_021627)	promoter-TSS (NM_021627)	90	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
84937	chr16	31330301	31330500	+	0	NA	exon (NM_001145808, exon 27 of 30)	exon (NM_001145808, exon 27 of 30)	-24776	NM_001286375	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
68140	chr14	75535871	75536430	+	0	NA	intron (NM_006399, intron 2 of 2)	L2a|LINE|L2	13681	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
116525	chr19	18175351	18175650	+	0	NA	intron (NM_006332, intron 3 of 6)	intron (NM_006332, intron 3 of 6)	1687	NM_006332	10437		NM_006332	ENSG00000216490	IFI30	GILT|IFI-30|IP-30|IP30	IFI30 lysosomal thiol reductase	protein-coding
13620	chr1	116405771	116405930	+	0	NA	non-coding (NR_024124, exon 2 of 2)	non-coding (NR_024124, exon 2 of 2)	12709	NR_024126	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
178383	chr4	146643971	146644130	+	0	NA	Intergenic	Intergenic	5157	NM_004575	5458		NM_004575	ENSG00000151615	POU4F2	BRN3.2|BRN3B|Brn-3b	POU class 4 homeobox 2	protein-coding
175308	chr4	68309301	68309930	+	0	NA	TTS (NM_133370)	TTS (NM_133370)	40475	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
9612	chr1	52365461	52367030	+	0	NA	promoter-TSS (NM_001330585)	promoter-TSS (NM_001330585)	-40	NM_032449	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
230012	chr9	127005001	127005800	+	0	NA	intron (NM_001190729, intron 4 of 17)	Charlie24|DNA|hAT-Charlie	43175	NM_001366401	9649		NM_014636	ENSG00000136828	RALGPS1	RALGEF2|RALGPS1A	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
191564	chr6	11785551	11785650	+	0	NA	Intergenic	L2c|LINE|L2	-6553	NM_001143948	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
88967	chr16	87859701	87859900	+	0	NA	intron (NM_003486, intron 1 of 9)	AluSg|SINE|Alu	5904	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
161784	chr3	45036851	45036950	+	0	NA	TTS (NM_003278)	TTS (NM_003278)	6757	NM_001308394	7123		NM_003278	ENSG00000163815	CLEC3B	MCDR4|TN|TNA	C-type lectin domain family 3 member B	protein-coding
84552	chr16	30567071	30567550	+	0	NA	Intergenic	Intergenic	5097	NM_145271	146542		NM_145271	ENSG00000229809	ZNF688	-	zinc finger protein 688	protein-coding
192497	chr6	24973821	24975080	+	0	NA	intron (NM_001286446, intron 1 of 13)	L1MB8|LINE|L1	-38490	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
93395	chr17	18319601	18320600	+	0	NA	intron (NM_144775, intron 1 of 1)	MIRc|SINE|MIR	4807	NM_144775	140775		NM_144775	ENSG00000176994	SMCR8	DENND8A	SMCR8-C9orf72 complex subunit	protein-coding
99723	chr17	50907601	50907800	+	0	NA	Intergenic	Intergenic	-39722	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
124438	chr19	58488621	58489030	+	0	NA	intron (NM_001304453, intron 5 of 5)	AluY|SINE|Alu	11646	NM_001304453	55663		NM_017908	ENSG00000083838	ZNF446	ZKSCAN20|ZSCAN30|ZSCAN52	zinc finger protein 446	protein-coding
157453	chr22	45249121	45250650	+	0	NA	Intergenic	AluY|SINE|Alu	-8991	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
32304	chr10	102148901	102149100	+	0	NA	intron (NM_015062, intron 12 of 13)	intron (NM_015062, intron 12 of 13)	-3176	NM_001284388	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
171313	chr3	195967451	195968200	+	0	NA	intron (NR_003264, intron 13 of 16)	intron (NR_003264, intron 13 of 16)	22454	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
18003	chr1	160543901	160544200	+	0	NA	3' UTR (NM_001184879, exon 8 of 8)	3' UTR (NM_001184879, exon 8 of 8)	-20795	NM_001184714	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
195899	chr6	41720221	41720480	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	13260	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
75504	chr15	66394751	66395850	+	0	NA	intron (NM_002755, intron 1 of 10)	MER44A|DNA|TcMar-Tigger	8388	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
93360	chr17	18234951	18235250	+	0	NA	exon (NM_004140, exon 10 of 23)	exon (NM_004140, exon 10 of 23)	9465	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
97646	chr17	44197151	44197480	+	0	NA	exon (NM_001382312, exon 4 of 13)	exon (NM_001382312, exon 4 of 13)	2054	NM_001382315	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
84044	chr16	29574001	29574200	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSg|SINE|Alu	20992	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
226411	chr9	70423871	70424330	+	0	NA	Intergenic	L2a|LINE|L2	-9443	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
185051	chr5	115844701	115844900	+	0	NA	intron (NR_157087, intron 1 of 5)	intron (NR_157087, intron 1 of 5)	2313	NR_157087	1176		NM_001284	ENSG00000177879	AP3S1	CLAPS3|Sigma3A	adaptor related protein complex 3 subunit sigma 1	protein-coding
15026	chr1	148336401	148337500	+	0	NA	Intergenic	L1ME4a|LINE|L1	-2396	NR_049810	100847044		NR_049810	ENSG00000283676	MIR5087	-	microRNA 5087	ncRNA
168714	chr3	150737301	150737700	+	0	NA	intron (NR_121657, intron 1 of 2)	intron (NR_121657, intron 1 of 2)	1485	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
164003	chr3	53167071	53167230	+	0	NA	intron (NM_001316327, intron 2 of 18)	intron (NM_001316327, intron 2 of 18)	-1553	NM_001354678	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
61873	chr13	77172471	77172990	+	0	NA	intron (NM_015057, intron 37 of 82)	L2a|LINE|L2	97216	NR_046716	100874212		NR_046716	ENSG00000236051	MYCBP2-AS1	-	MYCBP2 antisense RNA 1	ncRNA
165405	chr3	97824901	97825100	+	0	NA	intron (NM_153605, intron 1 of 21)	intron (NM_153605, intron 1 of 21)	2989	NM_153605	131544		NM_153605	ENSG00000080200	CRYBG3	DKFZp667G2110|vlAKAP	crystallin beta-gamma domain containing 3	protein-coding
33565	chr10	119369901	119370300	+	0	NA	intron (NM_005308, intron 2 of 15)	intron (NM_005308, intron 2 of 15)	-7872	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
224109	chr9	4604421	4605180	+	0	NA	intron (NR_148446, intron 7 of 8)	intron (NR_148446, intron 7 of 8)	57423	NM_001353487	55064		NM_017985	ENSG00000106686	SPATA6L	C9orf68|bA6J24.2	spermatogenesis associated 6 like	protein-coding
79936	chr16	1749371	1749730	+	0	NA	intron (NM_001040439, intron 8 of 30)	intron (NM_001040439, intron 8 of 30)	14565	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
151876	chr22	18733751	18734380	+	0	NA	intron (NR_165635, intron 1 of 11)	HSATI|Satellite|Satellite	130	NR_136561	642643		NR_136561	ENSG00000182824	FAM230E	LINC01662	family with sequence similarity 230 member E	ncRNA
190766	chr6	491401	491880	+	0	NA	intron (NM_018303, intron 25 of 27)	intron (NM_018303, intron 25 of 27)	99888	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
161683	chr3	43387251	43387550	+	0	NA	intron (NM_001204831, intron 11 of 12)	intron (NM_001204831, intron 11 of 12)	-35438	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
30152	chr10	74168721	74169180	+	0	NA	intron (NM_001369123, intron 1 of 9)	AluJb|SINE|Alu	-7813	NM_001123	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
55144	chr12	98643671	98646530	+	0	NA	promoter-TSS (NM_001160)	promoter-TSS (NM_001160)	-190	NM_013229	317		NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
160586	chr3	31212221	31213150	+	0	NA	Intergenic	AluSc5|SINE|Alu	-50898	NR_130459	100423038		NR_130459	ENSG00000265376	MIR466	hsa-mir-466	microRNA 466	ncRNA
130919	chr2	87478371	87478730	+	0	NA	intron (NR_024204, intron 2 of 3)	AluJo|SINE|Alu	8600	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
103881	chr17	79785271	79785430	+	0	NA	3' UTR (NM_005189, exon 5 of 5)	3' UTR (NM_005189, exon 5 of 5)	7172	NM_032647	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
44431	chr11	104669101	104669400	+	0	NA	Intergenic	Intergenic	-59948	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
48260	chr12	8591171	8591480	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	21534	NM_020661	57379		NM_020661	ENSG00000111732	AICDA	AID|ARP2|CDA2|HEL-S-284|HIGM2	activation induced cytidine deaminase	protein-coding
56317	chr12	112714171	112714330	+	0	NA	intron (NM_001347952, intron 1 of 21)	intron (NM_001347952, intron 1 of 21)	-19074	NR_031631	100302227		NR_031631	ENSG00000283507	MIR1302-1	MIRN1302-1|hsa-mir-1302-1	microRNA 1302-1	ncRNA
200917	chr6	139143901	139144100	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	8920	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
226597	chr9	73154501	73155880	+	0	NA	intron (NM_000700, intron 1 of 12)	intron (NM_000700, intron 1 of 12)	3325	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
99881	chr17	56676951	56677050	+	0	NA	Intergenic	Intergenic	83301	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
122365	chr19	49357601	49358000	+	0	NA	intron (NM_001256661, intron 3 of 12)	MSTB|LTR|ERVL-MaLR	3717	NM_001256661	8463		NM_003598	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain transcription factor 2	protein-coding
168613	chr3	149530771	149530950	+	0	NA	intron (NM_001348362, intron 7 of 9)	intron (NM_001348362, intron 7 of 9)	56163	NM_004617	7104		NM_004617	ENSG00000169903	TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
9281	chr1	46402021	46402280	+	0	NA	exon (NM_001441, exon 2 of 15)	exon (NM_001441, exon 2 of 15)	7833	NM_001441	2166		NM_001441	ENSG00000117480	FAAH	FAAH-1|FAAH1|PSAB	fatty acid amide hydrolase	protein-coding
105121	chr17	82219121	82219380	+	0	NA	Intergenic	Intergenic	-6408	NM_001367828	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
33590	chr10	119511001	119511200	+	0	NA	intron (NM_002925, intron 4 of 4)	intron (NM_002925, intron 4 of 4)	25433	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
206246	chr7	29196271	29197350	+	0	NA	promoter-TSS (NM_001293072)	promoter-TSS (NM_001293072)	-931	NM_001293072	1124		NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding
192836	chr6	27141251	27141980	+	0	NA	intron (NM_080593, intron 1 of 1)	intron (NM_080593, intron 1 of 1)	2333	NM_003495	8294		NM_003495	ENSG00000276180	H4C9	H4-16|H4/m|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4FM|H4M|HIST1H4I|TEBIVANED4|TEVANED4	H4 clustered histone 9	protein-coding
25750	chr10	9294901	9295100	+	0	NA	intron (NR_120635, intron 1 of 4)	intron (NR_120635, intron 1 of 4)	593	NR_120635	101928272		NR_120635		LOC101928272	-	uncharacterized LOC101928272	ncRNA
41583	chr11	66341701	66342700	+	0	NA	exon (NM_001024957, exon 2 of 10)	exon (NM_001024957, exon 2 of 10)	2904	NM_015399	25855		NM_015399	ENSG00000174744	BRMS1	-	BRMS1 transcriptional repressor and anoikis regulator	protein-coding
99188	chr17	49490851	49490950	+	0	NA	Intergenic	Intergenic	-4393	NM_002507	4804		NM_002507	ENSG00000064300	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
27642	chr10	32961251	32962280	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-3535	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
139592	chr2	224984701	224985000	+	0	NA	intron (NM_014689, intron 1 of 55)	AluSz6|SINE|Alu	-2423	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
192511	chr6	25013021	25013800	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	28878	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
50696	chr12	48917571	48919000	+	0	NA	exon (NM_001286957, exon 5 of 8)	exon (NM_001286957, exon 5 of 8)	6703	NM_001143781	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
197442	chr6	73725101	73725500	+	0	NA	intron (NM_001159588, intron 3 of 31)	intron (NM_001159588, intron 3 of 31)	29097	NM_133493	135228		NM_133493	ENSG00000156535	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
120063	chr19	42072701	42073180	+	0	NA	intron (NM_001330519, intron 1 of 1)	MIRb|SINE|MIR	-3226	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
80944	chr16	3854621	3855150	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	25235	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
48295	chr12	8956871	8957430	+	0	NA	intron (NR_137427, intron 1 of 2)	L1ME2|LINE|L1	7106	NM_001329103	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
190798	chr6	1202121	1202400	+	0	NA	Intergenic	Intergenic	-100928	NR_027116	285768		NR_027115	ENSG00000286785	LINC01622	-	long intergenic non-protein coding RNA 1622	ncRNA
174707	chr4	42633021	42633380	+	0	NA	intron (NM_001105529, intron 1 of 35)	intron (NM_001105529, intron 1 of 35)	23905	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
52560	chr12	56154471	56154980	+	0	NA	intron (NM_001199629, intron 2 of 7)	intron (NM_001199629, intron 2 of 7)	2138	NM_002475	140465		NM_002475	ENSG00000196465	MYL6B	MLC1SA	myosin light chain 6B	protein-coding
47207	chr12	838201	838400	+	0	NA	intron (NM_018979, intron 4 of 27)	L1MB8|LINE|L1	85377	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
28770	chr10	62045251	62045700	+	0	NA	intron (NM_032199, intron 4 of 9)	AluSg|SINE|Alu	-3882	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
54885	chr12	95837921	95838450	+	0	NA	intron (NR_135014, intron 1 of 2)	MER50|LTR|ERV1	20654	NR_135015	105369921		NR_135014	ENSG00000258343	SNRPF-DT	-	SNRPF divergent transcript	ncRNA
73487	chr15	43699871	43700030	+	0	NA	TTS (NM_001321926)	TTS (NM_001321926)	6010	NM_001321929	548596		NM_001015001	ENSG00000223572	CKMT1A	CKMT1|U-MtCK|mia-CK	creatine kinase, mitochondrial 1A	protein-coding
31655	chr10	97408721	97409380	+	0	NA	Intergenic	Intergenic	-7680	NM_001145114	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
20568	chr1	198725001	198727000	+	0	NA	intron (NM_002838, intron 15 of 32)	intron (NM_002838, intron 15 of 32)	86960	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
43229	chr11	75445151	75446200	+	0	NA	intron (NM_030792, intron 9 of 16)	intron (NM_030792, intron 9 of 16)	6652	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
124867	chr2	8300371	8300530	+	0	NA	intron (NR_034135, intron 2 of 8)	ERV3-16A3_I-int|LTR|ERVL	27969	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
137350	chr2	196149921	196150400	+	0	NA	intron (NM_004226, intron 3 of 7)	intron (NM_004226, intron 3 of 7)	21418	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
164309	chr3	57681571	57682630	+	0	NA	intron (NM_152678, intron 1 of 19)	intron (NM_152678, intron 1 of 19)	10977	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
132915	chr2	111419151	111419450	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	75861	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
52595	chr12	56201821	56202950	+	0	NA	TTS (NM_001242826)	TTS (NM_001242826)	-12902	NM_139067	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
136026	chr2	172452951	172453250	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	12922	NR_157573	101929947		NR_157573	ENSG00000232788	ITGA6-AS1	-	ITGA6 antisense RNA 1	ncRNA
160807	chr3	33007911	33008650	+	0	NA	intron (NM_000404, intron 15 of 15)	intron (NM_000404, intron 15 of 15)	56636	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
20739	chr1	200969051	200969350	+	0	NA	TTS (NM_001252103)	TTS (NM_001252103)	40256	NR_147176	647215		NR_147176	ENSG00000293444	MROH3P	C1orf81	maestro heat like repeat family member 3, pseudogene	pseudo
120369	chr19	43621651	43622600	+	0	NA	TTS (NM_145296)	TTS (NM_145296)	-2496	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
63476	chr13	114153101	114153300	+	0	NA	Intergenic	Intergenic	-20577	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
21973	chr1	209354371	209354530	+	0	NA	Intergenic	Intergenic	-17605	NR_146491	101929476		NR_146491		LINC01698	-	long intergenic non-protein coding RNA 1698	ncRNA
131854	chr2	98692321	98692880	+	0	NA	intron (NM_012214, intron 2 of 15)	Tigger3b|DNA|TcMar-Tigger	-29127	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
96342	chr17	40061521	40061900	+	0	NA	promoter-TSS (NM_001190919)	promoter-TSS (NM_001190919)	-483	NM_001190919	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
1808	chr1	6207351	6207980	+	0	NA	intron (NM_207396, intron 3 of 17)	MIRc|SINE|MIR	1546	NM_207396	388591		NM_173795	ENSG00000158286	RNF207	C1orf188	ring finger protein 207	protein-coding
69796	chr14	99196721	99197630	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	75022	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
208853	chr7	73707221	73707800	+	0	NA	intron (NM_001165903, intron 3 of 9)	intron (NM_001165903, intron 3 of 9)	-3807	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
191105	chr6	4010521	4011050	+	0	NA	Intergenic	AluJr|SINE|Alu	-10515	NM_003913	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
70899	chr14	103920971	103921930	+	0	NA	promoter-TSS (NM_004894)	promoter-TSS (NM_004894)	79	NM_001127393	9556		NM_004894	ENSG00000156411	ATP5MJ	6.8PL|ATP5MPL|C14orf2|MLQ|MP68|PLPM	ATP synthase membrane subunit j	protein-coding
86526	chr16	67160601	67162080	+	0	NA	intron (NM_018378, intron 1 of 2)	AluJo|SINE|Alu	1383	NM_018378	55336		NM_018378	ENSG00000135722	FBXL8	FBL8	F-box and leucine rich repeat protein 8	protein-coding
36241	chr11	3749571	3749930	+	0	NA	intron (NR_157590, intron 11 of 31)	L1M5|LINE|L1	47796	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
209776	chr7	87318951	87319480	+	0	NA	Intergenic	L1P3|LINE|L1	26277	NR_015381	11257		NM_007233	ENSG00000182165	TP53TG1	LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1|TP53LC12	TP53 target 1	ncRNA
175971	chr4	81473471	81473630	+	0	NA	Intergenic	L1PA7|LINE|L1	-1643	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
695	chr1	1397671	1398050	+	0	NA	intron (NM_001350497, intron 1 of 9)	AluJo|SINE|Alu	482	NM_001350497	81669		NM_030937	ENSG00000221978	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
135625	chr2	168194871	168195950	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	52185	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
146362	chr20	49267301	49267980	+	0	NA	intron (NM_021035, intron 3 of 13)	intron (NM_021035, intron 3 of 13)	10417	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
79307	chr16	554671	555130	+	0	NA	TTS (NM_005632)	TTS (NM_005632)	-5494	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
87900	chr16	78890551	78890650	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	710137	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
18669	chr1	167124071	167124250	+	0	NA	intron (NM_001080426, intron 5 of 5)	AluJr|SINE|Alu	30085	NM_001080426	92235		NM_001080426	ENSG00000198842	STYXL2	DUSP27	serine/threonine/tyrosine interacting like 2	protein-coding
116847	chr19	18600171	18600730	+	0	NA	intron (NM_004750, intron 1 of 8)	AluY|SINE|Alu	6349	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
12267	chr1	100463701	100464300	+	0	NA	intron (NM_001319210, intron 9 of 16)	intron (NM_001319210, intron 9 of 16)	-74139	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
193984	chr6	31735971	31736830	+	0	NA	5' UTR (NM_001288, exon 1 of 6)	5' UTR (NM_001288, exon 1 of 6)	145	NM_001287594	1192		NM_001288	ENSG00000213719	CLIC1	CL1C1|CLCNL1|G6|NCC27	chloride intracellular channel 1	protein-coding
101555	chr17	68021521	68022150	+	0	NA	Intergenic	AluSg|SINE|Alu	-13900	NM_002266	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
81812	chr16	11550901	11551300	+	0	NA	intron (NM_004862, intron 3 of 3)	intron (NM_004862, intron 3 of 3)	-23853	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
178089	chr4	140157651	140158300	+	0	NA	Intergenic	Intergenic	-3791	NM_018717	55534		NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3	mastermind like transcriptional coactivator 3	protein-coding
72448	chr15	32030171	32030630	+	0	NA	promoter-TSS (NM_000746).6	promoter-TSS (NM_000746).6	-83	NR_046324	1139		NM_000746	ENSG00000175344	CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor nicotinic alpha 7 subunit	protein-coding
180874	chr5	33442701	33443280	+	0	NA	intron (NM_001258437, intron 2 of 19)	intron (NM_001258437, intron 2 of 19)	2025	NM_152295	6897		NM_152295	ENSG00000113407	TARS1	TARS|TTD7|ThrRS	threonyl-tRNA synthetase 1	protein-coding
96708	chr17	41547551	41548180	+	0	NA	Intergenic	Intergenic	6630	NR_038442	147093		NR_038442	ENSG00000226629	LINC00974	-	long intergenic non-protein coding RNA 974	ncRNA
13571	chr1	116116151	116116250	+	0	NA	intron (NM_152367, intron 2 of 6)	intron (NM_152367, intron 2 of 6)	4445	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
2415	chr1	9587151	9587450	+	0	NA	Intergenic	AluSc|SINE|Alu	-1611	NM_001010866	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
4150	chr1	19348351	19348650	+	0	NA	intron (NM_001206540, intron 6 of 9)	L3|LINE|CR1	36174	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
171019	chr3	195065271	195065630	+	0	NA	Intergenic	CpG	-29138	NR_104188	100874528		NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
163278	chr3	50312721	50313130	+	0	NA	promoter-TSS (NM_153281)	promoter-TSS (NM_153281)	-544	NM_153281	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
98329	chr17	46264251	46265130	+	0	NA	Intergenic	Intergenic	-30441	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
196973	chr6	53061051	53062650	+	0	NA	promoter-TSS (NM_014920)	promoter-TSS (NM_014920)	-26	NM_001375399	22858		NM_014920	ENSG00000112144	CILK1	ECO|EJM10|ICK|LCK2|MRK|hICK	ciliogenesis associated kinase 1	protein-coding
26346	chr10	15245501	15245800	+	0	NA	intron (NM_001010924, intron 5 of 7)	MIR|SINE|MIR	-76957	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
161298	chr3	39372151	39372250	+	0	NA	Intergenic	L1PA4|LINE|L1	-11170	NM_001354798	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
98127	chr17	45891951	45892250	+	0	NA	intron (NR_024559, intron 1 of 1)	intron (NR_024559, intron 1 of 1)	-2282	NM_016835	4137		NM_005910	ENSG00000186868	MAPT	DDPAC|FTDP-17|MAPTL|MSTD|MTBT1|MTBT2|PPND|PPP1R103|TAU|Tau-PHF6|tau-40	microtubule associated protein tau	protein-coding
237423	chrX	119645321	119645780	+	0	NA	intron (NM_145799, intron 5 of 10)	AluSp|SINE|Alu	1298	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
48486	chr12	9813821	9814680	+	0	NA	intron (NR_159359, intron 1 of 5)	L1M2|LINE|L1	-13231	NR_159361	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
72626	chr15	38302821	38303080	+	0	NA	intron (NM_152594, intron 2 of 6)	AluSc8|SINE|Alu	50114	NM_152594	161742		NM_152594	ENSG00000166068	SPRED1	LGSS|NFLS|PPP1R147|hSpred1|spred-1	sprouty related EVH1 domain containing 1	protein-coding
101632	chr17	68230371	68230530	+	0	NA	intron (NM_001346472, intron 2 of 7)	MLT1H2|LTR|ERVL-MaLR	-17124	NM_001346474	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
176097	chr4	82989371	82990630	+	0	NA	intron (NM_001115007, intron 1 of 12)	HERVL40-int|LTR|ERVL	20823	NM_194282	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
182453	chr5	62319351	62319900	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	13419	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
61001	chr13	47999321	47999580	+	0	NA	intron (NM_003850, intron 1 of 10)	AluYm1|SINE|Alu	1823	NM_003850	8803		NM_003850	ENSG00000136143	SUCLA2	A-BETA|A-SCS|LINC00444|MTDPS5|SCS-betaA	succinate-CoA ligase ADP-forming subunit beta	protein-coding
65009	chr14	38255401	38256280	+	0	NA	promoter-TSS (NR_169588)	promoter-TSS (NR_169588)	-205	NR_169588	112268136		NR_169588		LOC112268136	-	uncharacterized LOC112268136	ncRNA
203217	chr6	168168601	168169000	+	0	NA	Intergenic	Intergenic	57717	NR_134590	105378137		NR_134590	ENSG00000237987	LOC105378137	-	uncharacterized LOC105378137	ncRNA
133219	chr2	113180171	113180780	+	0	NA	intron (NM_012455, intron 1 of 16)	intron (NM_012455, intron 1 of 16)	6504	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
8696	chr1	42146551	42147130	+	0	NA	Intergenic	Intergenic	-6570	NM_007102	2981		NM_007102	ENSG00000044012	GUCA2B	GCAP-II|UGN	guanylate cyclase activator 2B	protein-coding
22884	chr1	225809921	225810950	+	0	NA	non-coding (NR_165626, exon 1 of 8)	non-coding (NR_165626, exon 1 of 8)	311	NR_165624	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
206279	chr7	29884371	29884530	+	0	NA	exon (NM_001080529, exon 5 of 9)	exon (NM_001080529, exon 5 of 9)	77896	NM_001080529	644150		NM_001080529	ENSG00000122574	WIPF3	CR16	WAS/WASL interacting protein family member 3	protein-coding
136277	chr2	174697071	174697540	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-14392	NM_001375835	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
228948	chr9	113381571	113381730	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4664	NM_001371923	81932		NM_031219	ENSG00000119431	HDHD3	2810435D12Rik|C9orf158	haloacid dehalogenase like hydrolase domain containing 3	protein-coding
217471	chr8	28835151	28835330	+	0	NA	intron (NR_026826, intron 4 of 14)	intron (NR_026826, intron 4 of 14)	54675	NM_001172562	55756		NM_018250	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding
116341	chr19	17854201	17854400	+	0	NA	Intergenic	Intergenic	-5610	NM_000980	6142		NM_000980	ENSG00000105640	RPL18A	L18A|eL20	ribosomal protein L18a	protein-coding
99206	chr17	49555271	49555630	+	0	NA	intron (NR_103773, intron 1 of 2)	intron (NR_103773, intron 1 of 2)	18614	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
36958	chr11	11207551	11207650	+	0	NA	Intergenic	Intergenic	145650	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
140724	chr2	234437321	234437580	+	0	NA	Intergenic	Intergenic	17145	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
167352	chr3	128763201	128763530	+	0	NA	intron (NM_004637, intron 1 of 5)	AluY|SINE|Alu	37182	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
2360	chr1	9289971	9291250	+	0	NA	Intergenic	Intergenic	-2284	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
24594	chr1	245955871	245956730	+	0	NA	intron (NM_001375963, intron 5 of 11)	intron (NM_001375963, intron 5 of 11)	32251	NM_001375965	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
151849	chr22	18559671	18559830	+	0	NA	Intergenic	Intergenic	-10922	NR_003563	728233		NR_003563	ENSG00000290425	PI4KAP1	-	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudo
229272	chr9	120495201	120495430	+	0	NA	intron (NM_018249, intron 12 of 37)	SVA_F|Retroposon|SVA	84852	NM_001011649	55755		NM_018249	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
85587	chr16	53500821	53501630	+	0	NA	intron (NM_001308325, intron 1 of 9)	intron (NM_001308325, intron 1 of 9)	1984	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
171160	chr3	195627851	195628680	+	0	NA	Intergenic	Intergenic	23894	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
79109	chr16	201221	201900	+	0	NA	intron (NM_018032, intron 5 of 8)	AluY|SINE|Alu	21101	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
39976	chr11	62598871	62600070	+	0	NA	intron (NM_001330292, intron 3 of 17)	intron (NM_001330292, intron 3 of 17)	1780	NM_001330292	9219		NM_004739	ENSG00000149480	MTA2	MTA1L1|PID	metastasis associated 1 family member 2	protein-coding
109623	chr19	979671	980330	+	0	NA	Intergenic	Intergenic	-2928	NM_001372085	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
188625	chr5	157209801	157210000	+	0	NA	intron (NM_005546, intron 2 of 16)	MER3|DNA|hAT-Charlie	29060	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
181428	chr5	40825551	40826080	+	0	NA	non-coding (NR_159993, exon 5 of 5)	non-coding (NR_159993, exon 5 of 5)	6920	NR_002583	619564		NR_002583	ENSG00000212296	SNORD72	HBII-240	small nucleolar RNA, C/D box 72	snoRNA
31214	chr10	91389501	91390300	+	0	NA	intron (NR_024467, intron 3 of 4)	intron (NR_024467, intron 3 of 4)	-19335	NM_001348365	143279		NM_173497	ENSG00000165338	HECTD2	-	HECT domain E3 ubiquitin protein ligase 2	protein-coding
14519	chr1	144839701	144840100	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	121729	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
117255	chr19	19447351	19448880	+	0	NA	intron (NM_001384516, intron 2 of 12)	intron (NM_001384516, intron 2 of 12)	13052	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
124361	chr19	58353101	58353500	+	0	NA	exon (NM_130786, exon 2 of 8)	exon (NM_130786, exon 2 of 8)	192	NM_130786	1		NM_130786	ENSG00000121410	A1BG	A1B|ABG|GAB|HYST2477	alpha-1-B glycoprotein	protein-coding
67532	chr14	71011371	71012150	+	0	NA	intron (NM_001308160, intron 8 of 33)	intron (NM_001308160, intron 8 of 33)	104301	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
18178	chr1	160807271	160808280	+	0	NA	intron (NM_001261456, intron 2 of 9)	L1PB4|LINE|L1	11601	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
45795	chr11	119322501	119322880	+	0	NA	Intergenic	Intergenic	-5560	NM_006500	4162		NM_006500	ENSG00000076706	MCAM	CD146|HEMCAM|METCAM|MUC18|MelCAM	melanoma cell adhesion molecule	protein-coding
28250	chr10	45592301	45592800	+	0	NA	intron (NM_145021, intron 1 of 6)	intron (NM_145021, intron 1 of 6)	2356	NM_145021	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
59549	chr13	27272971	27273500	+	0	NA	exon (NM_001331126, exon 4 of 4)	exon (NM_001331126, exon 4 of 4)	2058	NM_001331126	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
5831	chr1	26699371	26699530	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	3435	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
93025	chr17	17253321	17253980	+	0	NA	intron (NM_003653, intron 9 of 11)	Charlie10a|DNA|hAT-Charlie	-16482	NM_144606	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
233083	chr9	137102901	137103350	+	0	NA	intron (NM_016219, intron 8 of 12)	intron (NM_016219, intron 8 of 12)	11608	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
194515	chr6	33294321	33294850	+	0	NA	intron (NM_004761, intron 11 of 17)	MIR|SINE|MIR	4340	NR_106892	102465501		NR_106892	ENSG00000284064	MIR6834	hsa-mir-6834	microRNA 6834	ncRNA
238732	chrX	154247201	154248430	+	0	NA	Intergenic	MER73|LTR|ERVL	-9723	NM_001048181	728458		NM_001048181	ENSG00000166160	OPN1MW2	GOP	opsin 1, medium wave sensitive 2	protein-coding
57956	chr12	123767671	123768180	+	0	NA	intron (NM_207437, intron 2 of 77)	MLT1C|LTR|ERVL-MaLR	5430	NM_207437	196385		NM_207437	ENSG00000197653	DNAH10	SPGF56	dynein axonemal heavy chain 10	protein-coding
71424	chr14	105586121	105586380	+	0	NA	Intergenic	Intergenic	-34866	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
18871	chr1	167985051	167985330	+	0	NA	intron (NR_146228, intron 4 of 17)	(GT)n|Simple_repeat|Simple_repeat	-13470	NR_031702	100313835		NR_031702	ENSG00000221545	MIR1255B2	MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2	microRNA 1255b-2	ncRNA
109724	chr19	1083571	1083900	+	0	NA	intron (NM_012292, intron 21 of 22)	intron (NM_012292, intron 21 of 22)	7101	NM_001282334	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
141526	chr2	241269821	241270080	+	0	NA	intron (NM_005336, intron 1 of 27)	intron (NM_005336, intron 1 of 27)	2015	NM_001320966	3069		NM_005336	ENSG00000115677	HDLBP	HBP|PRO2900|VGL	high density lipoprotein binding protein	protein-coding
29202	chr10	68981901	68982230	+	0	NA	intron (NM_004728, intron 14 of 14)	AluSx1|SINE|Alu	-6738	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
128198	chr2	53964171	53965600	+	0	NA	intron (NM_014614, intron 1 of 46)	intron (NM_014614, intron 1 of 46)	6108	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
45760	chr11	119228671	119229300	+	0	NA	intron (NM_005188, intron 1 of 15)	AluSx|SINE|Alu	22646	NM_005188	867		NM_005188	ENSG00000110395	CBL	C-CBL|CBL2|FRA11B|NSLL|RNF55	Cbl proto-oncogene	protein-coding
160034	chr3	18430321	18431030	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	-5336	NM_001195470	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
15396	chr1	150229601	150229800	+	0	NA	intron (NM_001136478, intron 2 of 5)	AluSp|SINE|Alu	4978	NM_001136479	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
160301	chr3	27463301	27463700	+	0	NA	intron (NR_135544, intron 1 of 24)	AluSq|SINE|Alu	-6722	NM_001258380	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
153868	chr22	30250651	30250950	+	0	NA	Intergenic	Intergenic	-4041	NM_002309	3976		NM_002309	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	LIF interleukin 6 family cytokine	protein-coding
103014	chr17	76909971	76910200	+	0	NA	intron (NM_144677, intron 8 of 16)	intron (NM_144677, intron 8 of 16)	37438	NM_198955	146664		NM_144677	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B	protein-coding
177203	chr4	108359221	108359880	+	0	NA	Intergenic	Intergenic	187430	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
140623	chr2	233443201	233444100	+	0	NA	intron (NM_001377259, intron 8 of 27)	intron (NM_001377259, intron 8 of 27)	24438	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
66298	chr14	61398621	61399350	+	0	NA	intron (NM_006255, intron 2 of 13)	L1MC5|LINE|L1	77542	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
236074	chrX	56730151	56730750	+	0	NA	intron (NM_001348129, intron 1 of 2)	AluSq2|SINE|Alu	1207	NM_001348129	550643		NM_001348129	ENSG00000204272	NBDY	LINC01420|NoBody	negative regulator of P-body association	protein-coding
103387	chr17	78147301	78148050	+	0	NA	intron (NM_001163075, intron 2 of 4)	intron (NM_001163075, intron 2 of 4)	1290	NM_001163075	100141515		NM_001163075	ENSG00000187997	C17orf99	IL-40|UNQ464	chromosome 17 open reading frame 99	protein-coding
83404	chr16	27195751	27196600	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-7351	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
9907	chr1	54403501	54404250	+	0	NA	intron (NM_145716, intron 3 of 17)	intron (NM_145716, intron 3 of 17)	2519	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
233389	chr9	137544021	137544280	+	0	NA	intron (NM_001098537, intron 4 of 34)	intron (NM_001098537, intron 4 of 34)	6252	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
228589	chr9	104961251	104962000	+	0	NA	Intergenic	Intergenic	-33470	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
11859	chr1	93014771	93014930	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-53328	NM_001252270	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
119175	chr19	39419201	39419400	+	0	NA	intron (NM_022835, intron 11 of 18)	intron (NM_022835, intron 11 of 18)	5521	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
15851	chr1	151404121	151404380	+	0	NA	3' UTR (NM_145796, exon 17 of 17)	3' UTR (NM_145796, exon 17 of 17)	4677	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
4542	chr1	22018821	22019680	+	0	NA	Intergenic	Intergenic	-5941	NR_023918	29092		NM_014179	ENSG00000218510	LINC00339	HSPC157|NCRNA00339	long intergenic non-protein coding RNA 339	ncRNA
166694	chr3	120557371	120558030	+	0	NA	Intergenic	Intergenic	-38636	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
190284	chr5	179561351	179561950	+	0	NA	intron (NM_001040452, intron 2 of 17).2	intron (NM_001040452, intron 2 of 17).2	1919	NM_001040451	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
186812	chr5	139384201	139384400	+	0	NA	promoter-TSS (NM_152685)	promoter-TSS (NM_152685)	-950	NM_152685	9963		NM_005847	ENSG00000170482	SLC23A1	SLC23A2|SVCT1|YSPL3	solute carrier family 23 member 1	protein-coding
49647	chr12	28352101	28352300	+	0	NA	intron (NM_001352084, intron 6 of 11)	Tigger1|DNA|TcMar-Tigger	-161462	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
40558	chr11	64335171	64335330	+	0	NA	Intergenic	Intergenic	-4954	NM_032251	283234		NM_032251	ENSG00000168071	CCDC88B	BRLZ|CCDC88|HKRP3|gipie	coiled-coil domain containing 88B	protein-coding
17477	chr1	156715951	156716050	+	0	NA	Intergenic	AluSz|SINE|Alu	-10184	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
128166	chr2	48946501	48946780	+	0	NA	Intergenic	Intergenic	-112963	NR_107011	102465854		NR_107011	ENSG00000212036	MIR548BA	hsa-mir-548ba	microRNA 548ba	ncRNA
15158	chr1	148953751	148954050	+	0	NA	exon (NM_001002811, exon 1 of 19)	exon (NM_001002811, exon 1 of 19)	1443	NM_001350520	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
221519	chr8	124643801	124644880	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	84133	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
76789	chr15	77018901	77019330	+	0	NA	intron (NR_135552, intron 3 of 11)	intron (NR_135552, intron 3 of 11)	23989	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
236938	chrX	100411071	100411230	+	0	NA	promoter-TSS (NM_001105243)	promoter-TSS (NM_001105243)	-877	NM_001105243	57526		NM_020766	ENSG00000165194	PCDH19	DEE9|EFMR|EIEE9	protocadherin 19	protein-coding
210154	chr7	98250371	98253000	+	0	NA	intron (NM_015395, intron 1 of 25)	intron (NM_015395, intron 1 of 25)	547	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
113531	chr19	10137301	10138350	+	0	NA	intron (NM_001318730, intron 35 of 39)	intron (NM_001318730, intron 35 of 39)	-17926	NM_003755	8666		NM_003755	ENSG00000130811	EIF3G	EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44	eukaryotic translation initiation factor 3 subunit G	protein-coding
220101	chr8	94440471	94441250	+	0	NA	intron (NM_001205262, intron 3 of 3)	LTR2B|LTR|ERV1	-3916	NM_001256141	100861412		NM_001256141	ENSG00000265817	FSBP	-	fibrinogen silencer binding protein	protein-coding
228660	chr9	107282421	107285350	+	0	NA	promoter-TSS (NM_001244713)	promoter-TSS (NM_001244713)	-168	NM_001244724	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
197711	chr6	85685571	85685930	+	0	NA	Intergenic	Intergenic	-7017	NR_003038	387066		NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG	small nucleolar RNA host gene 5	ncRNA
203030	chr6	163750701	163751380	+	0	NA	Intergenic	Intergenic	-79556	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
23683	chr1	231416701	231417180	+	0	NA	intron (NM_001377261, intron 1 of 3)	intron (NM_001377261, intron 1 of 3)	5347	NM_001377261	54583		NM_022051	ENSG00000135766	EGLN1	C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6	egl-9 family hypoxia inducible factor 1	protein-coding
56119	chr12	110776221	110776700	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-33569	NM_002710	5501		NM_002710	ENSG00000186298	PPP1CC	PP-1G|PP1C|PPP1G	protein phosphatase 1 catalytic subunit gamma	protein-coding
134911	chr2	149596671	149596830	+	0	NA	intron (NR_110240, intron 1 of 2)	intron (NR_110240, intron 1 of 2)	-8975	NM_015702	27249		NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	metabolism of cobalamin associated D	protein-coding
138051	chr2	201433051	201433150	+	0	NA	intron (NM_015049, intron 1 of 15)	intron (NM_015049, intron 1 of 15)	18358	NM_015049	66008		NM_015049	ENSG00000115993	TRAK2	ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98	trafficking kinesin protein 2	protein-coding
6424	chr1	28113151	28113250	+	0	NA	Intergenic	Intergenic	-24563	NM_001282562	2140		NM_001990	ENSG00000158161	EYA3	-	EYA transcriptional coactivator and phosphatase 3	protein-coding
98099	chr17	45606371	45606530	+	0	NA	Intergenic	MER66B|LTR|ERV1	-4588	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
214762	chr7	151076901	151077800	+	0	NA	TTS (NM_003040)	TTS (NM_003040)	3459	NM_006712	10922		NM_006712	ENSG00000164896	FASTK	FAST	Fas activated serine/threonine kinase	protein-coding
160978	chr3	37179371	37179830	+	0	NA	Intergenic	AluJb|SINE|Alu	-3240	NM_001348298	9209		NM_006309	ENSG00000093167	LRRFIP2	HUFI-2	LRR binding FLII interacting protein 2	protein-coding
113816	chr19	10601851	10602900	+	0	NA	promoter-TSS (NM_001145056)	promoter-TSS (NM_001145056)	-80	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
153896	chr22	30297821	30298130	+	0	NA	intron (NM_031937, intron 3 of 8)	intron (NM_031937, intron 3 of 8)	-8470	NM_001037666	652968		NM_001037666	ENSG00000239282	CASTOR1	GATSL3	cytosolic arginine sensor for mTORC1 subunit 1	protein-coding
25270	chr10	6117771	6118130	+	0	NA	TTS (NM_032905)	TTS (NM_032905)	-26971	NR_136554	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
16087	chr1	153540671	153541450	+	0	NA	intron (NM_002962, intron 2 of 3)	intron (NM_002962, intron 2 of 3)	749	NM_002962	6276		NM_002962	ENSG00000196420	S100A5	S100D	S100 calcium binding protein A5	protein-coding
122607	chr19	49799421	49800130	+	0	NA	intron (NM_014203, intron 10 of 23)	intron (NM_014203, intron 10 of 23)	7909	NR_106857	102465479		NR_106857	ENSG00000276270	MIR6799	hsa-mir-6799	microRNA 6799	ncRNA
139747	chr2	229896951	229897280	+	0	NA	intron (NM_001348335, intron 1 of 5)	L1MC1|LINE|L1	24564	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
209749	chr7	87202821	87203280	+	0	NA	intron (NR_138030, intron 1 of 3)	intron (NR_138030, intron 1 of 3)	16682	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
52829	chr12	57048471	57048630	+	0	NA	intron (NM_005379, intron 1 of 27)	intron (NM_005379, intron 1 of 27)	1579	NM_005379	4640		NM_005379	ENSG00000166866	MYO1A	BBMI|DFNA48|MIHC|MYHL	myosin IA	protein-coding
31722	chr10	97685021	97685730	+	0	NA	intron (NM_021732, intron 1 of 2)	intron (NM_021732, intron 1 of 2)	1866	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
161266	chr3	39271151	39271750	+	0	NA	intron (NM_001171174, intron 1 of 1)	intron (NM_001171174, intron 1 of 1)	8586	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
169590	chr3	170907721	170909090	+	0	NA	intron (NM_020390, intron 1 of 4)	CpG	232	NM_020390	56648		NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
153437	chr22	25072051	25072850	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	40242	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
166793	chr3	122561621	122562350	+	0	NA	intron (NM_001146103, intron 1 of 10)	L2|LINE|L2	2315	NM_001146105	83666		NM_031458	ENSG00000138496	PARP9	ARTD9|BAL|BAL1|MGC:7868	poly(ADP-ribose) polymerase family member 9	protein-coding
89384	chr16	88801451	88801750	+	0	NA	Intergenic	AluJo|SINE|Alu	-2189	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
38865	chr11	47341501	47342680	+	0	NA	exon (NM_000256, exon 17 of 34)	exon (NM_000256, exon 17 of 34)	10612	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
97428	chr17	43527971	43528530	+	0	NA	3' UTR (NM_001261439, exon 5 of 5)	3' UTR (NM_001261439, exon 5 of 5)	2185	NM_001261439	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
190330	chr5	179626001	179626200	+	0	NA	intron (NM_001364226, intron 1 of 13)	intron (NM_001364226, intron 1 of 13)	-1500	NM_001364237	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
212980	chr7	130979001	130979200	+	0	NA	intron (NR_109851, intron 4 of 5)	intron (NR_109851, intron 4 of 5)	65636	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
70525	chr14	102367621	102368080	+	0	NA	intron (NM_001172631, intron 1 of 16)	L1MB8|LINE|L1	4909	NM_014844	9895		NM_014844	ENSG00000196663	TECPR2	HSAN9|KIAA0329|SPG49	tectonin beta-propeller repeat containing 2	protein-coding
4416	chr1	21222101	21222700	+	0	NA	intron (NM_001397, intron 17 of 18)	L2a|LINE|L2	-45503	NM_001198802	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
122957	chr19	50748151	50748450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-22164	NM_001506	2854		NM_001506	ENSG00000142511	GPR32	DRV1|RVDR1	G protein-coupled receptor 32	protein-coding
65663	chr14	52473551	52473850	+	0	NA	intron (NM_020784, intron 14 of 20)	intron (NM_020784, intron 14 of 20)	78805	NM_020784	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
148459	chr20	64029751	64030250	+	0	NA	intron (NM_012469, intron 19 of 20)	intron (NM_012469, intron 19 of 20)	-3727	NM_001348090	284739		NM_207349	ENSG00000196421	C20orf204	LINC00176|NCRNA00176|PRR17	chromosome 20 open reading frame 204	protein-coding
199481	chr6	118618721	118619600	+	0	NA	intron (NM_206921, intron 2 of 5)	HERV30-int|LTR|ERV1	32431	NM_206921	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
226742	chr9	76019771	76020130	+	0	NA	intron (NM_006200, intron 3 of 20)	intron (NM_006200, intron 3 of 20)	129277	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
38890	chr11	47397001	47397400	+	0	NA	Intergenic	Intergenic	-3770	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
170637	chr3	187039001	187039450	+	0	NA	intron (NM_173217, intron 3 of 6)	intron (NM_173217, intron 3 of 6)	507	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
77581	chr15	85031671	85032100	+	0	NA	intron (NM_173454, intron 1 of 20)	intron (NM_173454, intron 1 of 20)	49911	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
62984	chr13	112301901	112302100	+	0	NA	Intergenic	Intergenic	-11467	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
227152	chr9	86338451	86339000	+	0	NA	intron (NM_024617, intron 9 of 26)	intron (NM_024617, intron 9 of 26)	15685	NM_001185074	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
163136	chr3	50136571	50137130	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-18208	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
41052	chr11	65475001	65475830	+	0	NA	Intergenic	LTR37B|LTR|ERV1	20129	NR_160547	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
186731	chr5	139288101	139288600	+	0	NA	intron (NM_001282278, intron 4 of 16)	intron (NM_001282278, intron 4 of 16)	-5390	NM_018834	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
185287	chr5	126464101	126464300	+	0	NA	promoter-TSS (NM_001146322)	promoter-TSS (NM_001146322)	-950	NM_001146322	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
203854	chr7	1454471	1455230	+	0	NA	intron (NM_182924, intron 1 of 16)	intron (NM_182924, intron 1 of 16)	4620	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
55183	chr12	100672151	100672250	+	0	NA	Intergenic	Intergenic	78582	NM_001303131	283431		NM_174942	ENSG00000139354	GAS2L3	G2L3	growth arrest specific 2 like 3	protein-coding
200610	chr6	136761571	136762000	+	0	NA	intron (NM_005923, intron 1 of 29)	intron (NM_005923, intron 1 of 29)	-22262	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
114189	chr19	11402901	11403430	+	0	NA	intron (NM_001161616, intron 9 of 18)	AluYe5|SINE|Alu	16149	NM_001161616	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
87402	chr16	70528171	70528780	+	0	NA	intron (NM_012426, intron 2 of 25)	FRAM|SINE|Alu	-1024	NR_037420	100113402		NR_037420		SNORD111B	MIR3647	small nucleolar RNA, C/D box 111B	snoRNA
75713	chr15	68090851	68090950	+	0	NA	intron (NM_001320687, intron 3 of 14)	intron (NM_001320687, intron 3 of 14)	36324	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
22419	chr1	220088651	220089030	+	0	NA	intron (NM_001286150, intron 1 of 7)	AluY|SINE|Alu	948	NM_006085	10380		NM_006085	ENSG00000162813	BPNT1	HEL20|HsPIP|PIP	3'(2'), 5'-bisphosphate nucleotidase 1	protein-coding
54700	chr12	93429721	93430380	+	0	NA	intron (NM_003348, intron 1 of 3)	Tigger3b|DNA|TcMar-Tigger	11897	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
100116	chr17	58337071	58337330	+	0	NA	promoter-TSS (NR_038414)	promoter-TSS (NR_038414)	-2	NR_038416	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
192446	chr6	24902901	24903200	+	0	NA	intron (NM_001286446, intron 1 of 13)	MLT1G1|LTR|ERVL-MaLR	7684	NM_001346032	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
207003	chr7	38350871	38351250	+	0	NA	intron (NR_040085, intron 3 of 3)	intron (NR_040085, intron 3 of 3)	9483	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
41544	chr11	66288601	66290200	+	0	NA	promoter-TSS (NM_020470)	promoter-TSS (NM_020470)	-257	NM_020470	10897		NM_020470	ENSG00000174851	YIF1A	54TM|FinGER7|YIF1|YIF1P	Yip1 interacting factor homolog A, membrane trafficking protein	protein-coding
6601	chr1	28778001	28778200	+	0	NA	Intergenic	Intergenic	-34070	NM_000911	4985		NM_000911	ENSG00000116329	OPRD1	DOP|DOR|DOR1|OPRD	opioid receptor delta 1	protein-coding
77996	chr15	89573701	89573900	+	0	NA	Intergenic	Intergenic	-1669	NM_152259	90381		NM_152259	ENSG00000140534	TICRR	C15orf42|SLD3|Treslin	TOPBP1 interacting checkpoint and replication regulator	protein-coding
116868	chr19	18644451	18644550	+	0	NA	promoter-TSS (NM_001345983)	promoter-TSS (NM_001345983)	-138	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
36812	chr11	9666901	9667350	+	0	NA	intron (NM_001297714, intron 1 of 10)	AluSx|SINE|Alu	3048	NM_015055	23075		NM_015055	ENSG00000133789	SWAP70	HSPC321|SWAP-70	switching B cell complex subunit SWAP70	protein-coding
106094	chr18	9146071	9146930	+	0	NA	intron (NM_001204056, intron 1 of 11)	AluJr|SINE|Alu	8937	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
11696	chr1	91853221	91853480	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	32801	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
217519	chr8	29231221	29231550	+	0	NA	intron (NM_015254, intron 2 of 39)	intron (NM_015254, intron 2 of 39)	31685	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
214566	chr7	150584921	150585580	+	0	NA	Intergenic	Intergenic	17860	NM_018326	55303		NM_018326	ENSG00000133574	GIMAP4	IAN-1|IAN1|IMAP4|MSTP062	GTPase, IMAP family member 4	protein-coding
129144	chr2	65434601	65434800	+	0	NA	Intergenic	Intergenic	-2101	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
80983	chr16	3962821	3964450	+	0	NA	3' UTR (NM_001116, exon 11 of 11)	3' UTR (NM_001116, exon 11 of 11)	-13191	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
197832	chr6	87922651	87923150	+	0	NA	Intergenic	Intergenic	-124941	NM_030960	81833		NM_030960	ENSG00000118434	SPACA1	SAMP32|SPGF85	sperm acrosome associated 1	protein-coding
59287	chr13	24253671	24255550	+	0	NA	promoter-TSS (NR_046531)	promoter-TSS (NR_046531)	-171	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
169329	chr3	159941401	159941800	+	0	NA	intron (NR_108088, intron 9 of 9)	intron (NR_108088, intron 9 of 9)	-47235	NM_001354583	3592		NM_000882	ENSG00000168811	IL12A	CLMF|IL-12A|NFSK|NKSF1|P35	interleukin 12A	protein-coding
176079	chr4	82865671	82866600	+	0	NA	intron (NM_001318120, intron 12 of 28)	A-rich|Low_complexity|Low_complexity	25018	NM_001077207	22872		NM_014933	ENSG00000138674	SEC31A	ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1	SEC31 homolog A, COPII coat complex component	protein-coding
195658	chr6	37962501	37962980	+	0	NA	intron (NM_021943, intron 2 of 5)	LTR12_|LTR|ERV1	143013	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
191913	chr6	15438701	15439830	+	0	NA	intron (NM_001267040, intron 3 of 17)	intron (NM_001267040, intron 3 of 17)	190410	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
173017	chr4	4459151	4459250	+	0	NA	intron (NM_016930, intron 3 of 10)	intron (NM_016930, intron 3 of 10)	2772	NM_001346300	53407		NM_016930	ENSG00000168818	STX18	Ufe1	syntaxin 18	protein-coding
229994	chr9	126872421	126872900	+	0	NA	intron (NM_001099270, intron 1 of 1)	intron (NM_001099270, intron 1 of 1)	12021	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
206297	chr7	30137851	30138500	+	0	NA	intron (NM_152793, intron 1 of 2)	AluSz6|SINE|Alu	3189	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
81241	chr16	4602201	4603100	+	0	NA	Intergenic	Intergenic	12238	NM_145253	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
31526	chr10	96834821	96835080	+	0	NA	intron (NM_032440, intron 2 of 7)	AluSx4|SINE|Alu	2005	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
136299	chr2	174781301	174781500	+	0	NA	Intergenic	Intergenic	-16928	NM_000079	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
85249	chr16	48384151	48386380	+	0	NA	5' UTR (NM_003031, exon 1 of 2)	5' UTR (NM_003031, exon 1 of 2)	148	NM_003031	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
191282	chr6	6556901	6557140	+	0	NA	intron (NR_026970, intron 3 of 7)	intron (NR_026970, intron 3 of 7)	-31700	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
84276	chr16	30067951	30068050	+	0	NA	intron (NM_184041, intron 3 of 8)	intron (NM_184041, intron 3 of 8)	2240	NM_184041	226		NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase, fructose-bisphosphate A	protein-coding
32122	chr10	101228271	101228580	+	0	NA	intron (NM_006562, intron 1 of 1)	CpG-3279	535	NM_006562	10660		NM_006562	ENSG00000138136	LBX1	CCHS3|HPX-6|HPX6|LBX1H|homeobox	ladybird homeobox 1	protein-coding
153341	chr22	24408571	24408730	+	0	NA	intron (NM_001254732, intron 13 of 14)	intron (NM_001254732, intron 13 of 14)	-14947	NM_001278500	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
78335	chr15	90997751	90998250	+	0	NA	TTS (NM_001289149)	TTS (NM_001289149)	-3465	NM_003981	9055		NM_003981	ENSG00000198901	PRC1	ASE1|MAP65	protein regulator of cytokinesis 1	protein-coding
149116	chr21	17603701	17604130	+	0	NA	intron (NM_006806, intron 3 of 4)	L2c|LINE|L2	-7771	NR_149073	110806272		NR_149073	ENSG00000280594	BTG3-AS1	ASBEL	BTG3 antisense RNA 1	ncRNA
179727	chr5	190401	190730	+	0	NA	promoter-TSS (NM_001080478)	promoter-TSS (NM_001080478)	-930	NM_001080478	389257		NM_001080478	ENSG00000185028	LRRC14B	-	leucine rich repeat containing 14B	protein-coding
132103	chr2	101350151	101350490	+	0	NA	3' UTR (NM_153836, exon 4 of 4)	3' UTR (NM_153836, exon 4 of 4)	37183	NM_153836	200407		NM_153836	ENSG00000175874	CREG2	-	cellular repressor of E1A stimulated genes 2	protein-coding
195908	chr6	41731701	41731900	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	1810	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
86655	chr16	67461101	67461300	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	19957	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
12494	chr1	107963021	107964300	+	0	NA	promoter-TSS (NR_046653)	promoter-TSS (NR_046653)	-783	NR_046653	100873946		NR_046653	ENSG00000230489	VAV3-AS1	-	VAV3 antisense RNA 1	ncRNA
143340	chr20	25798101	25798830	+	0	NA	intron (NR_026714, intron 1 of 3)	SST1|Satellite|centr	-2357	NR_027061	728882		NR_026714		FAM182B	-	family with sequence similarity 182 member B	ncRNA
124848	chr2	7773201	7773800	+	0	NA	Intergenic	Intergenic	126155	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
19580	chr1	179293371	179294500	+	0	NA	non-coding (NR_045530, exon 1 of 14)	non-coding (NR_045530, exon 1 of 14)	138	NM_003101	6646		NM_003101	ENSG00000057252	SOAT1	ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT	sterol O-acyltransferase 1	protein-coding
233555	chrX	271551	272080	+	0	NA	Intergenic	Intergenic	-4541	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228355	chr9	99052621	99053530	+	0	NA	intron (NM_001855, intron 31 of 41)	intron (NM_001855, intron 31 of 41)	-52038	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
198983	chr6	110899701	110899900	+	0	NA	Intergenic	AluSq2|SINE|Alu	25016	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
219691	chr8	80687151	80687480	+	0	NA	exon (NM_001033723, exon 4 of 9)	exon (NM_001033723, exon 4 of 9)	187153	NM_001367783	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
143875	chr20	32562201	32562400	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	23033	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
130780	chr2	86844601	86845350	+	0	NA	intron (NM_172102, intron 3 of 4)	intron (NM_172102, intron 3 of 4)	-16850	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
226546	chr9	72353551	72354130	+	0	NA	3' UTR (NM_006007, exon 6 of 6)	3' UTR (NM_006007, exon 6 of 6)	10716	NM_001278243	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
211152	chr7	102569771	102570100	+	0	NA	intron (NM_001097615, intron 1 of 8)	intron (NM_001097615, intron 1 of 8)	2686	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
84083	chr16	29607901	29608100	+	0	NA	intron (NR_135317, intron 1 of 11)	intron (NR_135317, intron 1 of 11)	5717	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
218035	chr8	38786371	38788930	+	0	NA	promoter-TSS (NM_001352798)	promoter-TSS (NM_001352798)	414	NM_006283	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
198212	chr6	98416751	98417080	+	0	NA	Intergenic	L1PA2|LINE|L1	392384	NR_031579	100302164		NR_031579	ENSG00000238367	MIR2113	hsa-mir-2113	microRNA 2113	ncRNA
55728	chr12	108307151	108307450	+	0	NA	intron (NM_001142344, intron 1 of 2)	intron (NM_001142344, intron 1 of 2)	13362	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
33079	chr10	110893551	110894000	+	0	NA	intron (NM_145341, intron 9 of 12)	intron (NM_145341, intron 9 of 12)	-4315	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
149634	chr21	33478371	33480930	+	0	NA	intron (NM_006134, intron 1 of 6)	CpG	324	NM_006134	757		NM_006134	ENSG00000142188	TMEM50B	C21orf4|HCVP7TP3	transmembrane protein 50B	protein-coding
163713	chr3	52287171	52288900	+	0	NA	TTS (NR_046719)	TTS (NR_046719)	207	NM_145262	132158		NM_145262	ENSG00000168237	GLYCTK	HBEBP2|HBEBP4|HBeAgBP4A	glycerate kinase	protein-coding
116437	chr19	18022231	18022880	+	0	NA	Intergenic	L2c|LINE|L2	14385	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
237231	chrX	109731951	109733900	+	0	NA	non-coding (NR_158569, exon 1 of 1)	non-coding (NR_158569, exon 1 of 1)	332	NM_001318510	2182		NM_004458	ENSG00000068366	ACSL4	ACS4|FACL4|LACS4|MRX63|MRX68|XLID63	acyl-CoA synthetase long chain family member 4	protein-coding
221471	chr8	124476041	124477230	+	0	NA	intron (NM_007218, intron 1 of 1)	intron (NM_007218, intron 1 of 1)	1755	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
100733	chr17	63907371	63907530	+	0	NA	Intergenic	Intergenic	3808	NM_001321068	1444		NM_001318	ENSG00000204414	CSHL1	CS-5|CSHP1|CSL|GHB4|hCS-L	chorionic somatomammotropin hormone like 1	protein-coding
5510	chr1	25772571	25772930	+	0	NA	intron (NM_001385185, intron 7 of 10)	L2a|LINE|L2	-27443	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
229129	chr9	114468451	114468550	+	0	NA	intron (NM_015404, intron 2 of 11)	intron (NM_015404, intron 2 of 11)	34715	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
234065	chrX	7927051	7927830	+	0	NA	promoter-TSS (NM_004650)	promoter-TSS (NM_004650)	-27	NM_004650	8228		NM_004650	ENSG00000006757	PNPLA4	DXS1283E|GS2|iPLA2eta	patatin like phospholipase domain containing 4	protein-coding
169023	chr3	152458701	152458900	+	0	NA	intron (NM_207296, intron 7 of 8)	intron (NM_207296, intron 7 of 8)	-117810	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
186609	chr5	138525271	138525430	+	0	NA	intron (NM_004730, intron 2 of 10)	AluSg|SINE|Alu	16361	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
176373	chr4	88591651	88592700	+	0	NA	promoter-TSS (NM_014606)	promoter-TSS (NM_014606)	-305	NM_001375478	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
235463	chrX	46576021	46576980	+	0	NA	intron (NM_019886, intron 1 of 1)	intron (NM_019886, intron 1 of 1)	2735	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
195371	chr6	36685071	36685230	+	0	NA	intron (NM_001374511, intron 2 of 2)	MIR|SINE|MIR	6436	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
40445	chr11	64204051	64205080	+	0	NA	TTS (NM_006819)	TTS (NM_006819)	-1355	NM_001382448	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
161032	chr3	37993521	37994730	+	0	NA	promoter-TSS (NM_001370265)	promoter-TSS (NM_001370265)	-13	NM_001370264	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
61363	chr13	51148221	51148480	+	0	NA	intron (NR_102431, intron 1 of 4)	intron (NR_102431, intron 1 of 4)	23872	NR_102432	647166		NM_001351589	ENSG00000226792	C13orf42	LINC00371|LINC00372	chromosome 13 open reading frame 42	protein-coding
206122	chr7	27249371	27249730	+	0	NA	Intergenic	Intergenic	-2321	NR_120507	101410536		NR_120507	ENSG00000253405	EVX1-AS	EVX1-AS1|EVX1AS	EVX1 antisense RNA	ncRNA
173384	chr4	7949251	7949550	+	0	NA	Intergenic	L2a|LINE|L2	-9474	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
8090	chr1	39051251	39051550	+	0	NA	Intergenic	AluSx3|SINE|Alu	25050	NM_004552	4725		NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding
34640	chr10	133318471	133319250	+	0	NA	Intergenic	CpG	-6523	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
186959	chr5	139662701	139662980	+	0	NA	intron (NM_001317207, intron 1 of 2)	MIRb|SINE|MIR	3285	NM_001317206	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
168155	chr3	139147901	139148100	+	0	NA	Intergenic	L1PA3|LINE|L1	43815	NR_026783	60467		NM_021812	ENSG00000232416	BPESC1	NCRNA00187	blepharophimosis, epicanthus inversus and ptosis candidate 1	ncRNA
102863	chr17	76500741	76502700	+	0	NA	promoter-TSS (NM_001376229)	promoter-TSS (NM_001376229)	-293	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
213056	chr7	131064271	131065330	+	0	NA	intron (NR_109852, intron 2 of 5)	L1MB1|LINE|L1	42230	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
160850	chr3	33095271	33095630	+	0	NA	intron (NM_001039770, intron 1 of 1)	AluYi6|SINE|Alu	1382	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
100634	chr17	63620621	63620880	+	0	NA	Intergenic	AluSx|SINE|Alu	-1667	NM_001330431	4215		NM_002401	ENSG00000198909	MAP3K3	MAPKKK3|MEKK3	mitogen-activated protein kinase kinase kinase 3	protein-coding
238811	chrX	154405451	154406050	+	0	NA	intron (NM_001009934, intron 1 of 7)	AluYj4|SINE|Alu	3504	NM_001303620	1774		NM_006730	ENSG00000013563	DNASE1L1	DNAS1L1|DNASEX|DNL1L|G4.8|XIB	deoxyribonuclease 1 like 1	protein-coding
16439	chr1	154573201	154573980	+	0	NA	intron (NM_000748, intron 5 of 5)	L2b|LINE|L2	5812	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
63534	chr14	16092171	16092530	+	0	NA	Intergenic	SAR|Satellite|Satellite	-2508767	NM_001013354	440153		NM_001013354	ENSG00000257115	OR11H12	-	olfactory receptor family 11 subfamily H member 12	protein-coding
93870	chr17	21033921	21035180	+	0	NA	intron (NM_015276, intron 1 of 12)	Tigger7|DNA|TcMar-Tigger	8461	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
67736	chr14	73569001	73570400	+	0	NA	exon (NM_001364178, exon 1 of 3)	exon (NM_001364178, exon 1 of 3)	487	NM_006821	10965		NM_006821	ENSG00000119673	ACOT2	CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128	acyl-CoA thioesterase 2	protein-coding
146530	chr20	49943201	49943400	+	0	NA	intron (NM_018683, intron 2 of 5)	AluJo|SINE|Alu	6903	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
183892	chr5	87361651	87361950	+	0	NA	intron (NM_022650, intron 9 of 24)	Tigger9b|DNA|TcMar-Tigger	-38172	NR_130929	644285		NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
157188	chr22	43085821	43086800	+	0	NA	intron (NR_027779, intron 1 of 11)	intron (NR_027779, intron 1 of 11)	3081	NM_012263	25809		NM_012263	ENSG00000100271	TTLL1	C22orf7|HS323M22B|TPGS3	TTL family tubulin polyglutamylase complex subunit L1	protein-coding
163614	chr3	52001371	52002830	+	0	NA	Intergenic	Intergenic	-6205	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
149733	chr21	34361521	34362400	+	0	NA	Intergenic	Intergenic	-2046	NM_172201	9992		NM_005136	ENSG00000159197	KCNE2	ATFB4|LQT5|LQT6|MIRP1	potassium voltage-gated channel subfamily E regulatory subunit 2	protein-coding
121255	chr19	46682771	46683130	+	0	NA	intron (NM_001079881, intron 15 of 18)	AluJb|SINE|Alu	21472	NR_040041	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
223336	chr8	143828671	143830330	+	0	NA	promoter-TSS (NM_014281)	promoter-TSS (NM_014281)	-185	NM_014281	22827		NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding
238536	chrX	153735321	153735800	+	0	NA	intron (NM_000033, intron 2 of 9)	L1MB7|LINE|L1	10704	NM_000033	215		NM_000033	ENSG00000101986	ABCD1	ABC42|ALD|ALDP|AMN	ATP binding cassette subfamily D member 1	protein-coding
141722	chr2	241855851	241856250	+	0	NA	intron (NM_005018, intron 1 of 4)	MLT1C|LTR|ERVL-MaLR	2844	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
94794	chr17	31095711	31096850	+	0	NA	intron (NM_001042492, intron 1 of 57)	intron (NM_001042492, intron 1 of 57)	1303	NM_001042492	4763		NM_000267	ENSG00000196712	NF1	NFNS|VRNF|WSS	neurofibromin 1	protein-coding
231881	chr9	133019501	133020580	+	0	NA	promoter-TSS (NR_132980).3	promoter-TSS (NR_132980).3	-390	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
3234	chr1	13784201	13784600	+	0	NA	intron (NM_012231, intron 8 of 9)	intron (NM_012231, intron 8 of 9)	34985	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
174750	chr4	46932001	46932230	+	0	NA	intron (NM_001204267, intron 7 of 7)	intron (NM_001204267, intron 7 of 7)	-22870	NM_130902	170712		NM_130902	ENSG00000170516	COX7B2	-	cytochrome c oxidase subunit 7B2	protein-coding
156531	chr22	41421601	41421800	+	0	NA	Intergenic	L1MD2|LINE|L1	25101	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
125412	chr2	11745001	11745480	+	0	NA	intron (NM_001261427, intron 2 of 20)	L2b|LINE|L2	-1392	NM_001349206	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
214598	chr7	150675621	150675880	+	0	NA	Intergenic	L1M4|LINE|L1	-9956	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
207309	chr7	44026701	44026900	+	0	NA	Intergenic	Intergenic	-7606	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
173230	chr4	6916171	6917070	+	0	NA	intron (NM_020773, intron 1 of 13)	intron (NM_020773, intron 1 of 13)	6794	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
137307	chr2	195662221	195662900	+	0	NA	intron (NM_020342, intron 1 of 9)	AluJb|SINE|Alu	5334	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
7554	chr1	35047171	35047330	+	0	NA	Intergenic	Intergenic	-12536	NM_001289088	79830		NM_024772	ENSG00000197056	ZMYM1	MYM	zinc finger MYM-type containing 1	protein-coding
156816	chr22	41931471	41931830	+	0	NA	Intergenic	MIRb|SINE|MIR	-4844	NM_052945	115650		NM_052945	ENSG00000159958	TNFRSF13C	BAFF-R|BAFFR|BROMIX|CD268|CVID4|prolixin	TNF receptor superfamily member 13C	protein-coding
116896	chr19	18713871	18714280	+	0	NA	intron (NM_015321, intron 1 of 13)	intron (NM_015321, intron 1 of 13)	30395	NM_001098482	23373		NM_015321	ENSG00000105662	CRTC1	MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding
8400	chr1	40397071	40398250	+	0	NA	intron (NM_001198980, intron 1 of 9)	L2b|LINE|L2	860	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
49848	chr12	32754851	32756680	+	0	NA	exon (NM_001040436, exon 1 of 5)	exon (NM_001040436, exon 1 of 5)	132	NM_001040436	51067		NM_015936	ENSG00000139131	YARS2	CGI-04|MLASA2|MT-TYRRS|TYRRS	tyrosyl-tRNA synthetase 2	protein-coding
70656	chr14	103045471	103045630	+	0	NA	intron (NM_006035, intron 1 of 36)	intron (NM_006035, intron 1 of 36)	11999	NM_006035	9578		NM_006035	ENSG00000198752	CDC42BPB	CHOCNS|MRCKB	CDC42 binding protein kinase beta	protein-coding
21062	chr1	203292371	203292730	+	0	NA	Intergenic	LTR85a|LTR|Gypsy?	4850	NR_117098	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
55830	chr12	108861701	108862100	+	0	NA	Intergenic	AluSc|SINE|Alu	-4317	NM_001161330	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
131030	chr2	88090651	88090980	+	0	NA	intron (NM_001330364, intron 3 of 8)	intron (NM_001330364, intron 3 of 8)	-8216	NR_039940	100616447		NR_039940	ENSG00000265003	MIR4780	-	microRNA 4780	ncRNA
145109	chr20	38775271	38775630	+	0	NA	Intergenic	Intergenic	26990	NM_024855	79913		NM_024855	ENSG00000101442	ACTR5	Arp5|INO80M	actin related protein 5	protein-coding
226579	chr9	72840371	72840980	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	33434	NR_121180	101927258		NR_121120	ENSG00000236849	LINC01474	-	long intergenic non-protein coding RNA 1474	ncRNA
108319	chr18	63424051	63424350	+	0	NA	Intergenic	AluSx|SINE|Alu	-1724	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
238317	chrX	149515471	149516150	+	0	NA	Intergenic	Intergenic	-10504	NM_001166550	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
223517	chr8	144105951	144106050	+	0	NA	intron (NM_032272, intron 3 of 7)	intron (NM_032272, intron 3 of 7)	1539	NM_032272	84232		NM_032272	ENSG00000179632	MAF1	-	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding
78213	chr15	90603371	90603530	+	0	NA	intron (NM_001042574, intron 4 of 14)	AluY|SINE|Alu	-56784	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
69592	chr14	97332001	97332300	+	0	NA	Intergenic	Intergenic	-126666	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
68017	chr14	75132251	75132950	+	0	NA	3' UTR (NM_006827, exon 5 of 5)	3' UTR (NM_006827, exon 5 of 5)	-5552	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
38375	chr11	44658501	44658700	+	0	NA	Intergenic	Intergenic	-68362	NM_130783	90139		NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding
181872	chr5	54311501	54312480	+	0	NA	Intergenic	Intergenic	-1417	NM_019087	54622		NM_019087	ENSG00000185305	ARL15	ARFRP2	ADP ribosylation factor like GTPase 15	protein-coding
137801	chr2	199917771	199918200	+	0	NA	intron (NM_153689, intron 1 of 1)	THE1C|LTR|ERVL-MaLR	6692	NM_153689	205327		NM_153689	ENSG00000178074	C2orf69	COXPD53	chromosome 2 open reading frame 69	protein-coding
86722	chr16	67565551	67565850	+	0	NA	intron (NM_006565, intron 1 of 11)	intron (NM_006565, intron 1 of 11)	3174	NM_006565	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
34011	chr10	124698101	124699400	+	0	NA	intron (NM_014661, intron 2 of 4)	L2|LINE|L2	-5278	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
210715	chr7	100601151	100601630	+	0	NA	promoter-TSS (NM_002593)	promoter-TSS (NM_002593)	-973	NM_002593	5118		NM_002593	ENSG00000106333	PCOLCE	PCPE|PCPE-1|PCPE1	procollagen C-endopeptidase enhancer	protein-coding
49141	chr12	14940121	14940380	+	0	NA	Intergenic	L1PA16|LINE|L1	-1713	NM_152321	121506		NM_152321	ENSG00000139055	ERP27	C12orf46|PDIA8	endoplasmic reticulum protein 27	protein-coding
101389	chr17	67361471	67361780	+	0	NA	intron (NM_001316341, intron 2 of 12)	intron (NM_001316341, intron 2 of 12)	4952	NM_002816	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
231387	chr9	130711451	130711750	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-2281	NM_007313	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
215193	chr7	155763401	155764830	+	0	NA	intron (NM_053043, intron 15 of 17)	intron (NM_053043, intron 15 of 17)	45048	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
35406	chr11	1392451	1393000	+	0	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	2791	NM_003957	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
26508	chr10	18658601	18660680	+	0	NA	promoter-TSS (NM_001351116)	promoter-TSS (NM_001351116)	209	NM_178815	221079		NM_178815	ENSG00000165997	ARL5B	ARL8	ADP ribosylation factor like GTPase 5B	protein-coding
38423	chr11	45092371	45092530	+	0	NA	Intergenic	Intergenic	-1709	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
139768	chr2	230160051	230160580	+	0	NA	Intergenic	Intergenic	59669	NM_001378443	3431		NM_004509	ENSG00000135899	SP110	IFI41|IFI75|IPR1|VODI	SP110 nuclear body protein	protein-coding
176046	chr4	82378251	82378350	+	0	NA	Intergenic	Intergenic	-4304	NM_031369	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
125741	chr2	20668651	20668750	+	0	NA	intron (NM_182828, intron 1 of 1)	intron (NM_182828, intron 1 of 1)	1556	NM_182828	151449		NM_182828	ENSG00000143869	GDF7	BMP12	growth differentiation factor 7	protein-coding
209572	chr7	77413171	77413880	+	0	NA	intron (NR_146937, intron 1 of 31)	L1ME3E|LINE|L1	-1673	NR_110073	101927243		NR_110073		LOC101927243	-	uncharacterized LOC101927243	ncRNA
223760	chr8	144522051	144523450	+	0	NA	exon (NM_001024678, exon 5 of 5)	exon (NM_001024678, exon 5 of 5)	4283	NM_001024678	441381		NM_001024678	ENSG00000254402	LRRC24	LRRC14OS	leucine rich repeat containing 24	protein-coding
115943	chr19	16659351	16660700	+	0	NA	intron (NM_024104, intron 1 of 4)	CpG-13958	119	NM_001300925	79086		NM_024104	ENSG00000214046	SMIM7	C19orf42	small integral membrane protein 7	protein-coding
91066	chr17	3032021	3032280	+	0	NA	intron (NM_001100398, intron 22 of 23)	intron (NM_001100398, intron 22 of 23)	31457	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
90768	chr17	2060601	2061780	+	0	NA	3' UTR (NM_001256828, exon 11 of 11)	3' UTR (NM_001256828, exon 11 of 11)	4880	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
153525	chr22	26563151	26563480	+	0	NA	intron (NM_001362923, intron 1 of 7)	intron (NM_001362923, intron 1 of 7)	2026	NM_001008566	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
8344	chr1	40200701	40201550	+	0	NA	intron (NM_012421, intron 4 of 7)	MER5A1|DNA|hAT-Charlie	39738	NM_012421	6018		NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	RLF zinc finger	protein-coding
58228	chr12	128570151	128570650	+	0	NA	intron (NM_001136103, intron 3 of 8)	intron (NM_001136103, intron 3 of 8)	253558	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
204352	chr7	2894721	2895450	+	0	NA	Intergenic	Intergenic	-50777	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
137665	chr2	197437421	197437800	+	0	NA	Intergenic	AluJr|SINE|Alu	-2517	NM_001005526	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
175645	chr4	76449251	76449750	+	0	NA	intron (NM_020859, intron 1 of 10)	intron (NM_020859, intron 1 of 10)	14271	NM_020859	57619		NM_020859	ENSG00000138771	SHROOM3	APXL3|MSTP013|SHRM|ShrmL	shroom family member 3	protein-coding
98570	chr17	47712221	47712880	+	0	NA	TTS (NM_014726)	TTS (NM_014726)	17286	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
68834	chr14	91277721	91278380	+	0	NA	exon (NM_001080414, exon 29 of 30)	exon (NM_001080414, exon 29 of 30)	-24170	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
43905	chr11	88843651	88844150	+	0	NA	intron (NM_001143831, intron 3 of 9)	Tigger1|DNA|TcMar-Tigger	219759	NM_000842	2915		NM_000842	ENSG00000168959	GRM5	GPRC1E|MGLUR5|PPP1R86|mGlu5	glutamate metabotropic receptor 5	protein-coding
192479	chr6	24940551	24940850	+	0	NA	intron (NM_001286446, intron 1 of 13)	AluSz|SINE|Alu	-4740	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
22843	chr1	225449551	225449850	+	0	NA	Intergenic	MIRb|SINE|MIR	-20845	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
88749	chr16	86549151	86549650	+	0	NA	intron (NM_001159379, intron 3 of 7)	intron (NM_001159379, intron 3 of 7)	5835	NM_022764	64779		NM_022764	ENSG00000103248	MTHFSD	-	methenyltetrahydrofolate synthetase domain containing	protein-coding
209465	chr7	76510101	76510300	+	0	NA	promoter-TSS (NM_182684)	promoter-TSS (NM_182684)	-223	NM_030570	105375355		NM_030570	ENSG00000243566	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
30911	chr10	87082901	87083100	+	0	NA	intron (NM_001318906, intron 1 of 13)	AluSz|SINE|Alu	11087	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
63115	chr13	113326771	113327130	+	0	NA	intron (NM_024719, intron 5 of 7)	L1MB2|LINE|L1	-24723	NR_120385	100874068		NR_046541		GRTP1-AS1	-	GRTP1 antisense RNA 1	ncRNA
130852	chr2	87327971	87328530	+	0	NA	Intergenic	Intergenic	-127177	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
151439	chr21	46144971	46145280	+	0	NA	intron (NM_206965, intron 10 of 13)	intron (NM_206965, intron 10 of 13)	-6250	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
90539	chr17	1490771	1492530	+	0	NA	promoter-TSS (NM_033375)	promoter-TSS (NM_033375)	29	NM_033375	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
69261	chr14	93039801	93040000	+	0	NA	intron (NM_014216, intron 3 of 10).2	intron (NM_014216, intron 3 of 10).2	-2926	NM_001363707	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
64204	chr14	23036201	23036600	+	0	NA	Intergenic	AluSx|SINE|Alu	-1180	NM_001130725	5693		NM_002797	ENSG00000100804	PSMB5	LMPX|MB1	proteasome 20S subunit beta 5	protein-coding
195877	chr6	41602651	41603500	+	0	NA	TTS (NM_001012426)	TTS (NM_001012426)	4352	NR_039784	100616178		NR_039784	ENSG00000266494	MIR4641	-	microRNA 4641	ncRNA
223491	chr8	144062471	144062830	+	0	NA	Intergenic	Intergenic	-1958	NM_017570	26873		NM_017570	ENSG00000178814	OPLAH	5-Opase|OPLA|OPLAHD	5-oxoprolinase, ATP-hydrolysing	protein-coding
162356	chr3	47843721	47843980	+	0	NA	intron (NM_014966, intron 10 of 22)	AluJr|SINE|Alu	-5705	NR_031595	100302232		NR_031595	ENSG00000221585	MIR1226	MIRN1226|hsa-mir-1226|mir-1226	microRNA 1226	ncRNA
208289	chr7	66034471	66034780	+	0	NA	Intergenic	Intergenic	-41194	NM_001024943	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
37787	chr11	32434371	32434730	+	0	NA	promoter-TSS (NR_120549)	promoter-TSS (NR_120549)	-968	NR_120549	51352		NM_015855	ENSG00000183242	WT1-AS	WIT-1|WIT1|WT1-AS1|WT1AS	WT1 antisense RNA	ncRNA
47719	chr12	6457171	6457880	+	0	NA	exon (NM_018009, exon 4 of 7)	exon (NM_018009, exon 4 of 7)	5483	NR_147127	55080		NM_018009	ENSG00000139192	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein like	protein-coding
138287	chr2	203711221	203712500	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	5221	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
89343	chr16	88756971	88757380	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	14408	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
153847	chr22	30168921	30169450	+	0	NA	intron (NM_152510, intron 10 of 10)	L2b|LINE|L2	-70009	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
18361	chr1	161299251	161299750	+	0	NA	Intergenic	Intergenic	10468	NM_000530	4359		NM_000530	ENSG00000158887	MPZ	CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0	myelin protein zero	protein-coding
106406	chr18	13464571	13465530	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	5103	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
122900	chr19	50554921	50555400	+	0	NA	intron (NM_001080457, intron 1 of 2)	intron (NM_001080457, intron 1 of 2)	-4118	NM_001348568	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
84756	chr16	30976071	30976230	+	0	NA	intron (NM_014712, intron 13 of 18)	AluJb|SINE|Alu	-9057	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
212687	chr7	129663771	129663930	+	0	NA	intron (NM_001293164, intron 2 of 9)	SVA_A|Retroposon|SVA	33772	NM_001040110	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
184394	chr5	98883421	98883830	+	0	NA	intron (NR_157078, intron 19 of 36)	L1PB1|LINE|L1	-44937	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
42528	chr11	71387171	71387730	+	0	NA	Intergenic	Intergenic	35904	NR_038862	399923		NM_001001680	ENSG00000293435	ACTE1P	-	actin epsilon 1, pseudogene	ncRNA
141895	chr20	842251	842630	+	0	NA	intron (NM_001289147, intron 1 of 1)	intron (NM_001289147, intron 1 of 1)	1165	NM_001289147	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
190475	chr5	180208471	180209390	+	0	NA	intron (NM_175062, intron 1 of 13)	(CCCGCCG)n|Simple_repeat|Simple_repeat	281	NM_175062	255426		NM_175062	ENSG00000146090	RASGEF1C	-	RasGEF domain family member 1C	protein-coding
222156	chr8	132758871	132759480	+	0	NA	intron (NM_001382397, intron 1 of 10)	intron (NM_001382397, intron 1 of 10)	1407	NM_001382396	137835		NM_144649	ENSG00000165071	TMEM71	-	transmembrane protein 71	protein-coding
183725	chr5	81018451	81018950	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-57793	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
86214	chr16	58032271	58032630	+	0	NA	intron (NM_002428, intron 1 of 9)	L3|LINE|CR1	6696	NM_002428	4324		NM_002428	ENSG00000102996	MMP15	MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2	matrix metallopeptidase 15	protein-coding
201219	chr6	143549671	143550250	+	0	NA	Intergenic	Intergenic	12091	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
122650	chr19	49853551	49854180	+	0	NA	promoter-TSS (NR_039904)	promoter-TSS (NR_039904)	-726	NR_039904	100616313		NR_039904	ENSG00000265954	MIR4749	mir-4749	microRNA 4749	ncRNA
131217	chr2	95078821	95079430	+	0	NA	Intergenic	AluJo|SINE|Alu	42432	NM_001321997	64969		NM_031902	ENSG00000144029	MRPS5	MRP-S5|S5mt|uS5m	mitochondrial ribosomal protein S5	protein-coding
232061	chr9	133471571	133471930	+	0	NA	TTS (NM_001242369)	TTS (NM_001242369)	7349	NM_017585	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
233632	chrX	572251	572550	+	0	NA	Intergenic	Intergenic	-51944	NM_006883	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
98621	chr17	47782821	47783080	+	0	NA	Intergenic	Intergenic	38844	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
95550	chr17	36721771	36723450	+	0	NA	Intergenic	Intergenic	121027	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
170930	chr3	194305351	194305650	+	0	NA	intron (NR_024480, intron 2 of 2)	intron (NR_024480, intron 2 of 2)	7304	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
28934	chr10	63204351	63205750	+	0	NA	intron (NM_001322258, intron 9 of 24)	intron (NM_001322258, intron 9 of 24)	64173	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
104704	chr17	81542551	81542850	+	0	NA	intron (NR_033338, intron 7 of 8)	MLT1B|LTR|ERVL-MaLR	9653	NR_033338	80233		NM_025161	ENSG00000185504	FAAP100	C17orf70	FA core complex associated protein 100	protein-coding
62943	chr13	111383801	111384200	+	0	NA	Intergenic	HAL1|LINE|L1	63358	NM_152324	121793		NM_152324	ENSG00000153495	TEX29	C13orf16|bA474D23.1	testis expressed 29	protein-coding
189015	chr5	168613051	168613430	+	0	NA	Intergenic	L1MC4|LINE|L1	-33872	NM_024594	79646		NM_024594	ENSG00000120137	PANK3	-	pantothenate kinase 3	protein-coding
108013	chr18	58756301	58756800	+	0	NA	Intergenic	MER77|LTR|ERVL	-57330	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
104953	chr17	81957801	81958000	+	0	NA	exon (NM_178493, exon 6 of 11)	exon (NM_178493, exon 6 of 11)	3287	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
190562	chr5	180807151	180807250	+	0	NA	intron (NR_157150, intron 1 of 1)	MIRc|SINE|MIR	2617	NM_001114618	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
35355	chr11	1229671	1230030	+	0	NA	intron (NM_002458, intron 10 of 48)	intron (NM_002458, intron 10 of 48)	6784	NM_002458	727897		NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
29523	chr10	70813821	70814080	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1998	NM_003901	8879		NM_003901	ENSG00000166224	SGPL1	NPHS14|RENI|S1PL|SPL	sphingosine-1-phosphate lyase 1	protein-coding
50859	chr12	49170921	49171380	+	0	NA	Intergenic	L1MB8|LINE|L1	17930	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
81958	chr16	11853471	11854430	+	0	NA	Intergenic	AluJr|SINE|Alu	-2408	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
231014	chr9	129568501	129570130	+	0	NA	Intergenic	CpG	-39569	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
215342	chr7	157368521	157369650	+	0	NA	intron (NM_001363676, intron 5 of 6)	intron (NM_001363676, intron 5 of 6)	32081	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
46511	chr11	128423901	128424300	+	0	NA	Intergenic	Intergenic	98210	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
72555	chr15	34408671	34409180	+	0	NA	intron (NM_001368072, intron 1 of 23)	intron (NM_001368072, intron 1 of 23)	-19157	NM_181077	23015		NM_015003	ENSG00000175265	GOLGA8A	CFAP286|FAP286|GM88|GOLGA8B	golgin A8 family member A	protein-coding
160782	chr3	32945121	32946350	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5909	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
118509	chr19	35958901	35959930	+	0	NA	non-coding (NR_136525, exon 4 of 5)	non-coding (NR_136525, exon 4 of 5)	12300	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
238084	chrX	136228021	136228430	+	0	NA	intron (NM_001173517, intron 10 of 17)	intron (NM_001173517, intron 10 of 17)	23175	NM_024597	79649		NM_024597	ENSG00000129680	MAP7D3	MDP3	MAP7 domain containing 3	protein-coding
228967	chr9	113514551	113514650	+	0	NA	exon (NM_001276261, exon 6 of 15)	exon (NM_001276261, exon 6 of 15)	13093	NM_130795	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
104603	chr17	81409871	81410030	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-9172	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
182188	chr5	56812171	56812530	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	-3199	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
13737	chr1	116816421	116817000	+	0	NA	Intergenic	Intergenic	62280	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
23644	chr1	230863471	230863630	+	0	NA	intron (NM_001136494, intron 3 of 5)	intron (NM_001136494, intron 3 of 5)	4971	NM_032800	84886		NM_032800	ENSG00000119280	C1orf198	-	chromosome 1 open reading frame 198	protein-coding
101083	chr17	64922301	64922530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2924	NM_001303255	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
212719	chr7	129800121	129800380	+	0	NA	Intergenic	Intergenic	-25236	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
139796	chr2	230289101	230289550	+	0	NA	intron (NM_001278451, intron 17 of 25)	L1PA7|LINE|L1	-37846	NM_001308163	93349		NM_138402	ENSG00000185404	SP140L	-	SP140 nuclear body protein like	protein-coding
174882	chr4	48773501	48774150	+	0	NA	intron (NM_015030, intron 1 of 63)	AluJo|SINE|Alu	6454	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
3196	chr1	13737521	13737800	+	0	NA	intron (NM_001135610, intron 4 of 7)	intron (NM_001135610, intron 4 of 7)	-11755	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
107161	chr18	35341071	35341230	+	0	NA	intron (NM_001308123, intron 1 of 3)	Cheshire|DNA|hAT-Charlie	3270	NM_001375815	7572		NM_006965	ENSG00000172466	ZNF24	KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191	zinc finger protein 24	protein-coding
73039	chr15	40858801	40859730	+	0	NA	Intergenic	Intergenic	-14741	NR_146466	102724362		NR_146466	ENSG00000261183	SPINT1-AS1	-	SPINT1 antisense RNA 1	ncRNA
110181	chr19	1667501	1667980	+	0	NA	Intergenic	Intergenic	-15125	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
126949	chr2	33597701	33597930	+	0	NA	intron (NM_015475, intron 1 of 7)	intron (NM_015475, intron 1 of 7)	1484	NM_015475	25940		NM_015475	ENSG00000119812	FAM98A	-	family with sequence similarity 98 member A	protein-coding
25200	chr10	5685301	5686500	+	0	NA	non-coding (NR_135800, exon 2 of 2)	non-coding (NR_135800, exon 2 of 2)	1062	NM_001321785	54906		NM_017782	ENSG00000108021	TASOR2	C10orf18|FAM208B|bA318E3.2	transcription activation suppressor family member 2	protein-coding
108278	chr18	63302071	63303030	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	17219	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
57923	chr12	123536171	123536530	+	0	NA	promoter-TSS (NR_037470)	promoter-TSS (NR_037470)	-59	NR_037470	100500909		NR_037470	ENSG00000266655	MIR3908	-	microRNA 3908	ncRNA
214062	chr7	143390421	143391030	+	0	NA	TTS (NM_005232)	TTS (NM_005232)	8039	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
49762	chr12	31790021	31790280	+	0	NA	Intergenic	AluSq2|SINE|Alu	2148	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
20846	chr1	201830671	201830830	+	0	NA	intron (NM_018085, intron 1 of 23)	intron (NM_018085, intron 1 of 23)	-1191	NR_046696	100873949		NR_046696	ENSG00000231871	IPO9-AS1	-	IPO9 antisense RNA 1	ncRNA
204250	chr7	2566951	2567450	+	0	NA	intron (NM_152558, intron 2 of 21)	intron (NM_152558, intron 2 of 21)	8221	NM_001287500	23288		NM_152558	ENSG00000106012	IQCE	1700028P05Rik|PAPA7	IQ motif containing E	protein-coding
138751	chr2	215313751	215313930	+	0	NA	intron (NM_004044, intron 2 of 15)	intron (NM_004044, intron 2 of 15)	1781	NM_004044	471		NM_004044	ENSG00000138363	ATIC	AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding
167207	chr3	128415321	128415580	+	0	NA	Intergenic	Intergenic	-48144	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
39337	chr11	59207651	59208600	+	0	NA	TTS (NM_001039396)	TTS (NM_001039396)	4802	NM_001039396	219972		NM_001039396	ENSG00000197629	MPEG1	IMD77|MPG1|MPS1|Mpg-1|P-2	macrophage expressed 1	protein-coding
57892	chr12	123445321	123446180	+	0	NA	Intergenic	AluSx|SINE|Alu	-9017	NM_145058	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
197011	chr6	53318951	53319380	+	0	NA	intron (NM_001242830, intron 1 of 6)	AluYc|SINE|Alu	18452	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
119826	chr19	41357771	41357930	+	0	NA	intron (NM_030578, intron 3 of 3)	intron (NM_030578, intron 3 of 3)	-3928	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
203730	chr7	1137721	1138780	+	0	NA	promoter-TSS (NM_001318252)	promoter-TSS (NM_001318252)	-3	NM_001318252	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
239244	chrY	13050771	13050930	+	0	NA	Intergenic	L1MB3|LINE|L1	145145	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
147641	chr20	62182351	62183950	+	0	NA	TTS (NR_125981)	TTS (NR_125981)	122	NR_169200	26164		NM_015666	ENSG00000101181	MTG2	GTPBP5|ObgH1|dJ1005F21.2	mitochondrial ribosome associated GTPase 2	protein-coding
1872	chr1	6423121	6424030	+	0	NA	Intergenic	Intergenic	-1201	NM_031475	83715		NM_031475	ENSG00000187017	ESPN	DFNB36|LP2654|USH1M	espin	protein-coding
17407	chr1	156641521	156642550	+	0	NA	promoter-TSS (NM_021948)	promoter-TSS (NM_021948)	-82	NM_198427	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
157640	chr22	46114851	46115150	+	0	NA	Intergenic	Intergenic	1314	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
89794	chr16	89501751	89501850	+	0	NA	Intergenic	AluYh3|SINE|Alu	-6588	NM_001363850	6687		NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7 matrix AAA peptidase subunit, paraplegin	protein-coding
109942	chr19	1335151	1335250	+	0	NA	Intergenic	AluSx|SINE|Alu	-19759	NM_001369789	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
66524	chr14	61749051	61749700	+	0	NA	promoter-TSS (NR_045406)	promoter-TSS (NR_045406)	-286	NR_045406	100750247		NR_045406		HIF1A-AS2	3'aHIF-1A|aHIF	HIF1A antisense RNA 2	ncRNA
198163	chr6	94942551	94942830	+	0	NA	Intergenic	L1PA2|LINE|L1	634761	NR_047502	101927288		NR_047502	ENSG00000261366	MANEA-DT	MANEA-AS1	MANEA divergent transcript	ncRNA
13429	chr1	114328671	114329030	+	0	NA	Intergenic	Intergenic	-174981	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
9900	chr1	54377451	54377550	+	0	NA	intron (NM_145716, intron 4 of 17)	MIRc|SINE|MIR	28894	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
83474	chr16	27377651	27379100	+	0	NA	Intergenic	Intergenic	-23799	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
229435	chr9	121368671	121369200	+	0	NA	intron (NR_073037, intron 1 of 7)	AluSq|SINE|Alu	1315	NM_198194	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
90842	chr17	2342721	2343950	+	0	NA	intron (NM_001346700, intron 1 of 22)	intron (NM_001346700, intron 1 of 22)	5834	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
222203	chr8	133052951	133053880	+	0	NA	intron (NM_001282965, intron 1 of 6)	intron (NM_001282965, intron 1 of 6)	-1544	NR_146773	100302522		NR_146773	ENSG00000287736	PTCSC1	NCRNA00197|PTCSC	papillary thyroid carcinoma susceptibility candidate 1	ncRNA
68059	chr14	75254501	75255050	+	0	NA	Intergenic	Intergenic	-24053	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
187274	chr5	141547901	141548100	+	0	NA	intron (NM_005219, intron 17 of 27)	AluJr4|SINE|Alu	-10311	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
29625	chr10	71775101	71775800	+	0	NA	intron (NM_022124, intron 36 of 67)	intron (NM_022124, intron 36 of 67)	-1930	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
51245	chr12	51010271	51010430	+	0	NA	intron (NR_166670, intron 2 of 17)	AluSz|SINE|Alu	-1135	NM_001379448	4891		NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding
235521	chrX	47214851	47214950	+	0	NA	exon (NM_153280, exon 26 of 26)	exon (NM_153280, exon 26 of 26)	-3403	NM_033018	5127		NM_006201	ENSG00000102225	CDK16	PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1	cyclin dependent kinase 16	protein-coding
76399	chr15	74629021	74629480	+	0	NA	intron (NM_001130028, intron 12 of 12)	intron (NM_001130028, intron 12 of 12)	13414	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
226042	chr9	43130551	43131000	+	0	NA	intron (NR_160669, intron 2 of 3)	intron (NR_160669, intron 2 of 3)	4609	NR_160669	102724904		NR_160669	ENSG00000291167	LOC102724904	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
114969	chr19	14009771	14009930	+	0	NA	Intergenic	AluSg|SINE|Alu	-3530	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
72653	chr15	38509751	38510050	+	0	NA	intron (NM_001128602, intron 8 of 15)	Tigger10|DNA|TcMar-Tigger	54914	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
215573	chr7	158825001	158825330	+	0	NA	intron (NM_020728, intron 1 of 21)	AluSx1|SINE|Alu	4344	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
157996	chr22	49859871	49860230	+	0	NA	intron (NM_014838, intron 1 of 1)	AluJb|SINE|Alu	6206	NM_014838	9889		NM_014838	ENSG00000100426	ZBED4	-	zinc finger BED-type containing 4	protein-coding
201651	chr6	149479451	149479750	+	0	NA	intron (NM_207360, intron 1 of 5)	L2c|LINE|L2	5414	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
117916	chr19	32974551	32975050	+	0	NA	intron (NM_001300978, intron 2 of 2)	AluSq2|SINE|Alu	2558	NM_001300978	91442		NM_152266	ENSG00000131944	FAAP24	C19orf40	FA core complex associated protein 24	protein-coding
209192	chr7	75415121	75415380	+	0	NA	intron (NR_104013, intron 6 of 7)	(AGG)n|Simple_repeat|Simple_repeat	4928	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
24228	chr1	236147771	236148130	+	0	NA	intron (NM_003272, intron 1 of 6)	intron (NM_003272, intron 1 of 6)	5411	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
230441	chr9	128162021	128163080	+	0	NA	intron (NM_024112, intron 1 of 1)	L2c|LINE|L2	2285	NM_024112	79095		NM_024112	ENSG00000171159	BBLN	C9orf16|EST00098	bublin coiled coil protein	protein-coding
77918	chr15	89299001	89299200	+	0	NA	intron (NM_001376911, intron 24 of 37)	AluSx|SINE|Alu	27710	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
181245	chr5	39202911	39203780	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	16218	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
224507	chr9	19096371	19096780	+	0	NA	intron (NM_017645, intron 2 of 16)	AluSx1|SINE|Alu	6329	NM_017645	54801		NM_017645	ENSG00000147874	HAUS6	Dgt6|FAM29A	HAUS augmin like complex subunit 6	protein-coding
140942	chr2	237741771	237741930	+	0	NA	intron (NM_001137550, intron 11 of 23)	AluSz|SINE|Alu	49645	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
11618	chr1	91712921	91714080	+	0	NA	intron (NR_036634, intron 13 of 17)	intron (NR_036634, intron 13 of 17)	172651	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
166093	chr3	109774071	109774450	+	0	NA	Intergenic	Intergenic	171432	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
226199	chr9	65282851	65283250	+	0	NA	3' UTR (NM_001126334, exon 1 of 1)	3' UTR (NM_001126334, exon 1 of 1)	2159	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
209049	chr7	74667671	74668230	+	0	NA	intron (NM_001163636, intron 1 of 33)	AluSc|SINE|Alu	10232	NM_001518	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
201901	chr6	151289371	151289730	+	0	NA	intron (NM_005100, intron 2 of 4)	intron (NM_005100, intron 2 of 4)	-35981	NM_144497	9590		NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding
139047	chr2	218662521	218662980	+	0	NA	intron (NR_163955, intron 6 of 7)	intron (NR_163955, intron 6 of 7)	3067	NM_001371443	617		NM_004328	ENSG00000074582	BCS1L	BCS|BCS1|BJS|FLNMS|GRACILE|Hs.6719|MC3DN1|PTD|h-BCS|h-BCS1	BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone	protein-coding
42467	chr11	69674621	69675980	+	0	NA	promoter-TSS (NM_153451)	promoter-TSS (NM_153451)	53	NM_153451	220064		NM_153451	ENSG00000149716	LTO1	CIAB1|ORAOV1|TAOS1	LTO1 maturation factor of ABCE1	protein-coding
56651	chr12	119665901	119666100	+	0	NA	Intergenic	Intergenic	-2133	NM_006253	5564		NM_006253	ENSG00000111725	PRKAB1	AMPK|HAMPKb	protein kinase AMP-activated non-catalytic subunit beta 1	protein-coding
96258	chr17	39848271	39849450	+	0	NA	intron (NM_183231, intron 1 of 5)	AluJr|SINE|Alu	15328	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
189154	chr5	171385801	171386200	+	0	NA	TTS (NR_037474)	TTS (NR_037474)	760	NR_037474	100500831		NR_037474	ENSG00000264249	MIR3912	mir-3912	microRNA 3912	ncRNA
79179	chr16	307721	308250	+	0	NA	intron (NR_134879, intron 3 of 8)	intron (NR_134879, intron 3 of 8)	24821	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
39906	chr11	62512971	62513200	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	32579	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
161811	chr3	45507851	45508230	+	0	NA	intron (NR_048543, intron 1 of 3)	intron (NR_048543, intron 1 of 3)	1505	NR_048543	100885795		NR_048543		LARS2-AS1	-	LARS2 antisense RNA 1	ncRNA
216621	chr8	22095201	22096300	+	0	NA	intron (NR_148728, intron 4 of 19)	intron (NR_148728, intron 4 of 19)	6596	NR_148727	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
215240	chr7	156919321	156919580	+	0	NA	Intergenic	Intergenic	-26242	NR_146959	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
160633	chr3	31544551	31545050	+	0	NA	intron (NM_178862, intron 1 of 15)	AluSg|SINE|Alu	11875	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
157968	chr22	49817451	49818450	+	0	NA	intron (NM_001304808, intron 2 of 12)	AluJb|SINE|Alu	6381	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
161536	chr3	42638001	42639630	+	0	NA	exon (NM_001349125, exon 15 of 19)	exon (NM_001349125, exon 15 of 19)	-14882	NM_145166	92999		NM_145166	ENSG00000114853	ZBTB47	ZNF651	zinc finger and BTB domain containing 47	protein-coding
54934	chr12	96209601	96209800	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	15325	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
2367	chr1	9315571	9316000	+	0	NA	intron (NM_025106, intron 1 of 2)	intron (NM_025106, intron 1 of 2)	22891	NM_025106	80176		NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
103613	chr17	78729851	78730250	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-6300	NM_001292018	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
126588	chr2	28765401	28766180	+	0	NA	intron (NM_206876, intron 2 of 8)	AluJb|SINE|Alu	13960	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
15786	chr1	151200271	151201080	+	0	NA	intron (NM_001135637, intron 1 of 13)	intron (NM_001135637, intron 1 of 13)	2123	NM_003557	8394		NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein-coding
140024	chr2	231052371	231053580	+	0	NA	Intergenic	CpG	-3889	NM_001191037	5707		NM_002807	ENSG00000173692	PSMD1	P112|Rpn2|S1	proteasome 26S subunit, non-ATPase 1	protein-coding
99276	chr17	49750971	49751800	+	0	NA	intron (NM_030802, intron 1 of 7)	AluSc|SINE|Alu	12746	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
236673	chrX	76431701	76432530	+	0	NA	TTS (NM_020932)	TTS (NM_020932)	4405	NM_020932	57692		NM_020932	ENSG00000198934	MAGEE1	DAMAGE|HCA1	MAGE family member E1	protein-coding
224886	chr9	32378301	32378900	+	0	NA	Intergenic	Intergenic	-6003	NM_001278352	48		NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding
209343	chr7	76258921	76259180	+	0	NA	intron (NM_001291831, intron 3 of 15)	AluSx1|SINE|Alu	-43623	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
226924	chr9	79583971	79584680	+	0	NA	intron (NM_001351556, intron 4 of 18)	intron (NM_001351556, intron 4 of 18)	11148	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
179138	chr4	169486121	169486400	+	0	NA	intron (NM_001374421, intron 19 of 30)	intron (NM_001374421, intron 19 of 30)	126323	NM_001199400	4750		NM_012224	ENSG00000137601	NEK1	ALS24|NY-REN-55|OFD2|SRPS2|SRPS2A|SRTD6	NIMA related kinase 1	protein-coding
45385	chr11	118315171	118316030	+	0	NA	3' UTR (NM_000733, exon 9 of 9)	3' UTR (NM_000733, exon 9 of 9)	10870	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
61071	chr13	48315901	48316300	+	0	NA	intron (NM_000321, intron 2 of 26)	intron (NM_000321, intron 2 of 26)	12349	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
65079	chr14	39429001	39429200	+	0	NA	intron (NM_203301, intron 1 of 3)	intron (NM_203301, intron 1 of 3)	3400	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
127131	chr2	37663501	37663700	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	8042	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
50817	chr12	49093201	49093400	+	0	NA	intron (NM_021044, intron 1 of 2)	AluJo|SINE|Alu	1501	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
64046	chr14	22534601	22534930	+	0	NA	Intergenic	Intergenic	22297	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
168881	chr3	152307771	152308500	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	9121	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
166399	chr3	113552671	113553100	+	0	NA	intron (NM_001322297, intron 1 of 24)	intron (NM_001322297, intron 1 of 24)	20330	NM_001322296	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
176797	chr4	102521051	102521550	+	0	NA	intron (NM_001382625, intron 2 of 24)	intron (NM_001382625, intron 2 of 24)	-18814	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
99083	chr17	48994871	48995030	+	0	NA	Intergenic	Intergenic	-2435	NM_006546	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
7819	chr1	36296251	36296350	+	0	NA	intron (NM_001321471, intron 9 of 12)	intron (NM_001321471, intron 9 of 12)	-10068	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
201378	chr6	144912701	144913100	+	0	NA	Intergenic	Intergenic	329752	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
233684	chrX	1172351	1173280	+	0	NA	Intergenic	Intergenic	39834	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
208937	chr7	74095871	74096030	+	0	NA	intron (NM_001204426, intron 1 of 14)	intron (NM_001204426, intron 1 of 14)	2733	NM_001204426	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
138939	chr2	218245971	218246450	+	0	NA	intron (NM_152862, intron 8 of 10)	AluSx3|SINE|Alu	-13286	NM_001321950	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
139229	chr2	219297751	219298100	+	0	NA	exon (NM_001199764, exon 13 of 23)	exon (NM_001199764, exon 13 of 23)	-3725	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
209227	chr7	75642551	75643200	+	0	NA	intron (NM_001243198, intron 1 of 28)	intron (NM_001243198, intron 1 of 28)	-3633	NM_001382444	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
236774	chrX	79078121	79078400	+	0	NA	Intergenic	Intergenic	-66428	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
103714	chr17	78832351	78833030	+	0	NA	intron (NR_169585, intron 4 of 19)	intron (NR_169585, intron 4 of 19)	8124	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
172152	chr4	1208171	1209600	+	0	NA	promoter-TSS (NM_001199021)	promoter-TSS (NM_001199021)	77	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
50034	chr12	43811051	43811350	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-4883	NR_073473	5756		NM_002822	ENSG00000151239	TWF1	A6|PTK9	twinfilin actin binding protein 1	protein-coding
160734	chr3	32457701	32458600	+	0	NA	Intergenic	Intergenic	44702	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
29272	chr10	69182551	69183530	+	0	NA	intron (NM_001301683, intron 2 of 15)	L2|LINE|L2	2806	NM_001323587	6832		NM_003171	ENSG00000156502	SUPV3L1	SUV3	Suv3 like RNA helicase	protein-coding
184858	chr5	112159371	112159630	+	0	NA	intron (NM_001347887, intron 22 of 23)	intron (NM_001347887, intron 22 of 23)	-1026	NR_015370	114915		NM_053000		EPB41L4A-AS1	C5orf26|NCRNA00219|TIGA1	EPB41L4A antisense RNA 1	ncRNA
109024	chr18	79724601	79725000	+	0	NA	intron (NM_048368, intron 10 of 11)	L1MD1|LINE|L1	43370	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
18495	chr1	161662951	161663280	+	0	NA	promoter-TSS (NM_004001)	promoter-TSS (NM_004001)	0	NM_004001	2213		NM_004001	ENSG00000072694	FCGR2B	CD32|CD32B|FCG2|FCGR2|FCGR2C|FcGRIIB|FcRII-c|FcgammaRIIb|IGFR2	Fc gamma receptor IIb	protein-coding
18801	chr1	167627421	167629300	+	0	NA	Intergenic	Intergenic	-1833	NM_001322923	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
73854	chr15	50109151	50109450	+	0	NA	intron (NM_024837, intron 1 of 27)	intron (NM_024837, intron 1 of 27)	4079	NR_073598	79895		NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
72334	chr15	31306321	31307180	+	0	NA	Intergenic	Intergenic	-20085	NM_001302461	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
47757	chr12	6541851	6541950	+	0	NA	intron (NM_001039670, intron 8 of 9)	intron (NM_001039670, intron 8 of 9)	6636	NM_001256799	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
238032	chrX	135158671	135159030	+	0	NA	intron (NM_001031705, intron 3 of 5)	MIR|SINE|MIR	12548	NM_001031705	54967		NM_017863	ENSG00000169551	CT55	BJHCC20A|CXorf48|SPGFX7	cancer/testis antigen 55	protein-coding
91914	chr17	7313101	7313930	+	0	NA	intron (NM_004489, intron 7 of 10)	intron (NM_004489, intron 7 of 10)	1845	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
233783	chrX	1435201	1436100	+	0	NA	intron (NM_001173473, intron 4 of 12).2	intron (NM_001173473, intron 4 of 12).2	17259	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
60946	chr13	46404021	46404280	+	0	NA	Intergenic	Intergenic	-14108	NM_001286761	80183		NM_025113	ENSG00000102445	RUBCNL	C13orf18|KIAA0226L|PACER	rubicon like autophagy enhancer	protein-coding
231155	chr9	129876501	129877630	+	0	NA	intron (NM_001110303, intron 22 of 25)	intron (NM_001110303, intron 22 of 25)	7460	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
18108	chr1	160704321	160704650	+	0	NA	intron (NM_001256030, intron 1 of 2)	Arthur1|DNA|hAT-Tip100	7337	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
174834	chr4	48363421	48364130	+	0	NA	intron (NM_020846, intron 1 of 7)	SVA_D|Retroposon|SVA	22246	NM_020846	57606		NM_020846	ENSG00000109171	SLAIN2	KIAA1458	SLAIN motif family member 2	protein-coding
234476	chrX	17861021	17861550	+	0	NA	promoter-TSS (NR_033349)	promoter-TSS (NR_033349)	13	NM_001172739	10742		NM_021785	ENSG00000131831	RAI2	-	retinoic acid induced 2	protein-coding
113261	chr19	8509551	8509650	+	0	NA	TTS (NM_001146175)	TTS (NM_001146175)	4567	NM_032370	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
213552	chr7	139106971	139107800	+	0	NA	intron (NM_020119, intron 1 of 12)	intron (NM_020119, intron 1 of 12)	2335	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
14231	chr1	143221471	143221630	+	0	NA	Intergenic	Intergenic	201042	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
18460	chr1	161554851	161555580	+	0	NA	Intergenic	LTR8|LTR|ERV1	-4478	NM_001329120	2214		NM_000569	ENSG00000203747	FCGR3A	CD16|CD16-II|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|FcGRIIIA|IGFR3|IMD20	Fc gamma receptor IIIa	protein-coding
35534	chr11	1574101	1575750	+	0	NA	intron (NR_021489, intron 1 of 1).3	intron (NR_021489, intron 1 of 1).3	2184	NR_021489	338651		NR_021489	ENSG00000233930	KRTAP5-AS1	-	KRTAP5-1/KRTAP5-2 antisense RNA 1	ncRNA
162864	chr3	49359751	49360530	+	0	NA	3' UTR (NM_001664, exon 5 of 5)	3' UTR (NM_001664, exon 5 of 5)	-1540	NM_001329455	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
76029	chr15	72196101	72196300	+	0	NA	intron (NM_001012642, intron 1 of 11)	intron (NM_001012642, intron 1 of 11)	1587	NM_001012642	196996		NM_001012642	ENSG00000175318	GRAMD2A	GRAMD2	GRAM domain containing 2A	protein-coding
209076	chr7	74792501	74792780	+	0	NA	Intergenic	Intergenic	18678	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
79668	chr16	1236501	1237180	+	0	NA	Intergenic	Intergenic	-3865	NM_003294	7177		NM_003294	ENSG00000172236	TPSAB1	TPS1|TPS2|TPSB1|TPSB2|Tryptase-2	tryptase alpha/beta 1	protein-coding
22935	chr1	225972271	225972630	+	0	NA	Intergenic	Intergenic	26893	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
176542	chr4	98265721	98266150	+	0	NA	intron (NM_001100427, intron 1 of 14)	intron (NM_001100427, intron 1 of 14)	4551	NM_001100428	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
115457	chr19	15347301	15347900	+	0	NA	Intergenic	AluSg7|SINE|Alu	-15061	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
74290	chr15	57732501	57732800	+	0	NA	Intergenic	Intergenic	25936	NM_015532	81488		NM_015532	ENSG00000255529	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	RNA polymerase II subunit M	protein-coding
29752	chr10	72214601	72214800	+	0	NA	intron (NM_001369095, intron 1 of 9)	intron (NM_001369095, intron 1 of 9)	1256	NM_001369106	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
191380	chr6	7439221	7439480	+	0	NA	Intergenic	AluJo|SINE|Alu	49521	NM_001348194	83732		NM_031480	ENSG00000124784	RIOK1	AD034|RIO1|RRP10|bA288G3.1	RIO kinase 1	protein-coding
182640	chr5	67156751	67157750	+	0	NA	intron (NM_015183, intron 25 of 27)	intron (NM_015183, intron 25 of 27)	39549	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
16727	chr1	155252471	155252630	+	0	NA	intron (NM_001267608, intron 4 of 10)	AluSq2|SINE|Alu	2933	NM_001267608	10712		NM_006589	ENSG00000160767	ENTREP3	C1orf2|COTE1|FAM189B	endosomal transmembrane epsin interactor 3	protein-coding
63406	chr13	114077921	114078200	+	0	NA	promoter-TSS (NM_001320822).2	promoter-TSS (NM_001320822).2	-105	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
21903	chr1	207819171	207820030	+	0	NA	non-coding (NR_026817, exon 1 of 1)	non-coding (NR_026817, exon 1 of 1)	1221	NR_026817	148696		NM_001039568		LOC148696	-	uncharacterized LOC148696	ncRNA
136726	chr2	181196321	181196580	+	0	NA	intron (NR_130784, intron 1 of 4)	intron (NR_130784, intron 1 of 4)	72613	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
178617	chr4	152099971	152101600	+	0	NA	promoter-TSS (NR_121628)	promoter-TSS (NR_121628)	32	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
96941	chr17	42177571	42178030	+	0	NA	intron (NM_012285, intron 4 of 16)	intron (NM_012285, intron 4 of 16)	3342	NM_012285	23415		NM_012285	ENSG00000089558	KCNH4	BEC2|ELK1|Kv12.3	potassium voltage-gated channel subfamily H member 4	protein-coding
143242	chr20	25041771	25041930	+	0	NA	intron (NM_001252675, intron 2 of 13)	L4_B_Mam|LINE|RTE-X	-9144	NM_001252676	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
1522	chr1	3031451	3031750	+	0	NA	Intergenic	Intergenic	10133	NM_080431	140625		NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin related protein T2	protein-coding
74265	chr15	57130821	57131200	+	0	NA	intron (NM_207038, intron 5 of 19)	intron (NM_207038, intron 5 of 19)	-88420	NM_001306220	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
112859	chr19	7562621	7563080	+	0	NA	Intergenic	L1MC2|LINE|L1	27133	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
213635	chr7	139647771	139648550	+	0	NA	intron (NM_022740, intron 2 of 14)	intron (NM_022740, intron 2 of 14)	124475	NM_001353368	154790		NM_001080511	ENSG00000236279	CLEC2L	-	C-type lectin domain family 2 member L	protein-coding
134424	chr2	143124251	143125150	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-4719	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
171687	chr3	197753221	197753680	+	0	NA	intron (NR_027840, intron 1 of 8)	intron (NR_027840, intron 1 of 8)	3203	NR_027840	84248		NM_032288	ENSG00000122068	FYTTD1	UIF	forty-two-three domain containing 1	protein-coding
28700	chr10	61140871	61141030	+	0	NA	Intergenic	Intergenic	124675	NR_108052	100507058		NR_108052	ENSG00000227244	LINC00845	-	long intergenic non-protein coding RNA 845	ncRNA
225480	chr9	35615501	35616130	+	0	NA	intron (NM_001782, intron 5 of 8)	intron (NM_001782, intron 5 of 8)	2598	NM_001782	971		NM_001782	ENSG00000137101	CD72	CD72b|LYB2	CD72 molecule	protein-coding
197884	chr6	89233721	89234350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2747	NM_001267582	2569		NM_002042	ENSG00000146276	GABRR1	-	gamma-aminobutyric acid type A receptor subunit rho1	protein-coding
47277	chr12	1596071	1596300	+	0	NA	Intergenic	Intergenic	-1604	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
198310	chr6	100578871	100579030	+	0	NA	intron (NM_006828, intron 36 of 41)	L1PA15|LINE|L1	-114029	NM_005068	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
190098	chr5	177852801	177853200	+	0	NA	Intergenic	AluJb|SINE|Alu	-22261	NR_003615	728554		NR_003615	ENSG00000291113	LOC728554	-	THO complex 3 pseudogene	pseudo
185939	chr5	132953121	132953600	+	0	NA	intron (NM_014423, intron 1 of 20)	AluJr|SINE|Alu	10274	NM_014423	27125		NM_014423	ENSG00000072364	AFF4	AF5Q31|CHOPS|MCEF	ALF transcription elongation factor 4	protein-coding
174007	chr4	26361121	26361850	+	0	NA	intron (NM_001374403, intron 1 of 11)	intron (NM_001374403, intron 1 of 11)	18345	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
94343	chr17	28879071	28879230	+	0	NA	TTS (NM_001330170)	TTS (NM_001330170)	-17420	NR_039885	100616385		NR_039885	ENSG00000284085	MIR4732	mir-4732	microRNA 4732	ncRNA
78042	chr15	90038051	90039000	+	0	NA	intron (NM_198526, intron 1 of 4)	L1MC4|LINE|L1	31770	NR_036135	100422841		NR_036135	ENSG00000265871	MIR3174	-	microRNA 3174	ncRNA
99756	chr17	50959701	50960100	+	0	NA	Intergenic	Intergenic	86978	NM_001251971	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
203398	chr6	170736471	170736800	+	0	NA	Intergenic	Intergenic	-151943	NM_001199461	5134		NM_002598	ENSG00000071994	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
171719	chr3	197929701	197929900	+	0	NA	intron (NM_032263, intron 6 of 11)	(AAAAC)n|Simple_repeat|Simple_repeat	20125	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
191234	chr6	5829101	5829300	+	0	NA	Intergenic	MIRb|SINE|MIR	-133928	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
145550	chr20	44206301	44206500	+	0	NA	intron (NM_016470, intron 2 of 3)	intron (NM_016470, intron 2 of 3)	4371	NM_016470	51526		NM_016470	ENSG00000132823	OSER1	C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1	oxidative stress responsive serine rich 1	protein-coding
161317	chr3	39410621	39411080	+	0	NA	promoter-TSS (NR_002324)	promoter-TSS (NR_002324)	-204	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
235345	chrX	44253121	44253740	+	0	NA	intron (NM_025184, intron 4 of 14)	L1PA7|LINE|L1	90242	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
4157	chr1	19363951	19364250	+	0	NA	intron (NM_001206540, intron 4 of 9)	intron (NM_001206540, intron 4 of 9)	51774	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
13501	chr1	114728851	114729450	+	0	NA	intron (NM_001242891, intron 13 of 20)	AluY|SINE|Alu	-12379	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
96778	chr17	41785671	41787280	+	0	NA	promoter-TSS (NM_001352777)	promoter-TSS (NM_001352777)	236	NM_002230	3728		NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PG|PKGB	junction plakoglobin	protein-coding
235870	chrX	51487751	51487930	+	0	NA	Intergenic	Intergenic	8752	NM_018159	55190		NM_018159	ENSG00000196368	NUDT11	APS1|ASP1|DIPP3b|DIPP3beta|hDIPP3beta	nudix hydrolase 11	protein-coding
35115	chr11	680871	681380	+	0	NA	intron (NM_001367390, intron 6 of 11)	intron (NM_001367390, intron 6 of 11)	14097	NM_021008	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
69386	chr14	94037951	94038550	+	0	NA	intron (NM_023112, intron 2 of 5)	intron (NM_023112, intron 2 of 5)	11910	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
178789	chr4	153483451	153484250	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	17490	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
15053	chr1	148402081	148403550	+	0	NA	promoter-TSS (NR_104081)	promoter-TSS (NR_104081)	100	NR_104081	101954272		NR_104081	ENSG00000201183	RNVU1-3	RNU1-113|RNU1-151|RNVU1-12|vU1.12|vU1.3	RNA, variant U1 small nuclear 3	snRNA
31082	chr10	89206771	89208080	+	0	NA	promoter-TSS (NM_003956)	promoter-TSS (NM_003956)	-108	NM_003956	9023		NM_003956	ENSG00000138135	CH25H	C25H	cholesterol 25-hydroxylase	protein-coding
78554	chr15	92998051	92998950	+	0	NA	exon (NM_001271, exon 31 of 39)	exon (NM_001271, exon 31 of 39)	74656	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
82986	chr16	22000901	22002050	+	0	NA	promoter-TSS (NM_001363519)	promoter-TSS (NM_001363519)	-359	NM_001363519	255762		NM_173806	ENSG00000155714	PDZD9	C16orf65	PDZ domain containing 9	protein-coding
155551	chr22	38719321	38719750	+	0	NA	intron (NM_004286, intron 4 of 11)	AluJr4|SINE|Alu	13591	NM_004286	9567		NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding
182996	chr5	72246051	72246430	+	0	NA	intron (NM_001286748, intron 4 of 11)	intron (NM_001286748, intron 4 of 11)	66453	NM_001324255	4131		NM_005909	ENSG00000131711	MAP1B	DFNA83|FUTSCH|MAP5|PPP1R102|PVNH9	microtubule associated protein 1B	protein-coding
87970	chr16	80539401	80539630	+	0	NA	intron (NR_120307, intron 1 of 5)	intron (NR_120307, intron 1 of 5)	-1219	NM_001305017	83657		NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein light chain roadblock-type 2	protein-coding
79377	chr16	646951	647280	+	0	NA	intron (NR_138610, intron 2 of 4)	intron (NR_138610, intron 2 of 4)	2198	NR_135177	105371038		NR_135177		LOC105371038	-	uncharacterized LOC105371038	ncRNA
22457	chr1	221478001	221478300	+	0	NA	Intergenic	Intergenic	-141854	NR_024236	400804		NR_024236	ENSG00000234754	LINC02817	C1orf140	long intergenic non-protein coding RNA 2817	ncRNA
126976	chr2	36354001	36354200	+	0	NA	TTS (NR_037631)	TTS (NR_037631)	1470	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
102470	chr17	75727271	75727830	+	0	NA	intron (NM_001005619, intron 3 of 38)	intron (NM_001005619, intron 3 of 38)	2854	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
6188	chr1	27443771	27443930	+	0	NA	intron (NM_006990, intron 1 of 8)	AluSq4|SINE|Alu	46317	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
152274	chr22	20287551	20287850	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-19382	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
168387	chr3	141962521	141962850	+	0	NA	intron (NM_006286, intron 8 of 10)	intron (NM_006286, intron 8 of 10)	37686	NM_001178140	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
185751	chr5	132180121	132180380	+	0	NA	Intergenic	Intergenic	-4626	NR_047470	100861518		NR_047470	ENSG00000237714	P4HA2-AS1	-	P4HA2 antisense RNA 1	ncRNA
132256	chr2	102615871	102616130	+	0	NA	Intergenic	Intergenic	-3553	NM_003048	6549		NM_003048	ENSG00000115616	SLC9A2	NHE2	solute carrier family 9 member A2	protein-coding
168014	chr3	136876621	136876880	+	0	NA	intron (NM_001291999, intron 1 of 3)	MIRb|SINE|MIR	14542	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
164954	chr3	71259101	71259300	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-14123	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
75574	chr15	67069071	67069580	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	3723	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
104447	chr17	81092171	81094000	+	0	NA	intron (NM_001385147, intron 5 of 12)	(CTGGG)n|Simple_repeat|Simple_repeat	-4526	NM_001385159	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
221117	chr8	118103051	118103680	+	0	NA	intron (NM_000127, intron 1 of 10)	AluJo|SINE|Alu	8461	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
234449	chrX	17549301	17549600	+	0	NA	intron (NR_135631, intron 1 of 1)	intron (NR_135631, intron 1 of 1)	9677	NR_046632	100873920		NR_046632		NHS-AS1	-	NHS antisense RNA 1	ncRNA
149682	chr21	33923971	33925050	+	0	NA	Intergenic	Intergenic	-6612	NR_038883	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
203366	chr6	170399221	170399650	+	0	NA	intron (NM_032448, intron 9 of 10)	intron (NM_032448, intron 9 of 10)	68674	NR_039787	100616430		NR_039787	ENSG00000266245	MIR4644	-	microRNA 4644	ncRNA
18073	chr1	160651371	160651850	+	0	NA	Intergenic	Intergenic	-4299	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
214178	chr7	144859551	144859680	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-23562	NM_001350895	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
218656	chr8	57343221	57343580	+	0	NA	promoter-TSS (NR_125818)	promoter-TSS (NR_125818)	-387	NR_125818	101929488		NR_125818	ENSG00000253871	LOC101929488	-	uncharacterized LOC101929488	ncRNA
32374	chr10	102403721	102404500	+	0	NA	intron (NM_001270965, intron 16 of 17)	AluY|SINE|Alu	5167	NR_073110	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
120664	chr19	45091221	45092200	+	0	NA	TTS (NM_001319055)	TTS (NM_001319055)	-1319	NR_134887	105372419		NR_134887	ENSG00000267348	GEMIN7-AS1	-	GEMIN7 antisense RNA 1	ncRNA
118150	chr19	35009951	35010430	+	0	NA	exon (NM_001136199, exon 4 of 18)	exon (NM_001136199, exon 4 of 18)	9867	NM_001136199	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
2198	chr1	8632101	8632300	+	0	NA	intron (NM_012102, intron 3 of 23)	intron (NM_012102, intron 3 of 23)	-137287	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
164604	chr3	66280171	66280700	+	0	NA	intron (NM_173471, intron 6 of 10)	intron (NM_173471, intron 6 of 10)	59432	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
18286	chr1	161127071	161127430	+	0	NA	intron (NM_001039711, intron 1 of 4)	intron (NM_001039711, intron 1 of 4)	5216	NM_001039712	9191		NM_004216	ENSG00000158796	DEDD	CASP8IP1|DEDD1|DEDPro1|DEFT|FLDED-1|FLDED1|KE05	death effector domain containing	protein-coding
182968	chr5	71455321	71456550	+	0	NA	exon (NM_018429, exon 1 of 39).3	exon (NM_018429, exon 1 of 39).3	284	NM_018429	55814		NM_018429	ENSG00000145734	BDP1	DFNB112|HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
228187	chr9	97632351	97634400	+	0	NA	promoter-TSS (NM_001351506)	promoter-TSS (NM_001351506)	-7	NM_139246	158427		NM_139246	ENSG00000136925	TSTD2	C9orf97	thiosulfate sulfurtransferase like domain containing 2	protein-coding
161084	chr3	38122551	38122850	+	0	NA	TTS (NM_007337)	TTS (NM_007337)	14427	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
218906	chr8	60747671	60747830	+	0	NA	intron (NM_001316690, intron 1 of 4)	MIRb|SINE|MIR	6491	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
173332	chr4	7652571	7653130	+	0	NA	intron (NM_020777, intron 4 of 26)	MER45R|DNA|hAT-Tip100	-101240	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
230712	chr9	128786521	128787980	+	0	NA	promoter-TSS (NM_001286772)	promoter-TSS (NM_001286772)	-3	NM_018201	54662		NM_018201	ENSG00000107021	TBC1D13	-	TBC1 domain family member 13	protein-coding
110961	chr19	2943801	2944000	+	0	NA	intron (NM_021217, intron 1 of 3)	AluSx1|SINE|Alu	1071	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
76197	chr15	73629001	73629200	+	0	NA	intron (NM_001161363, intron 1 of 8)	intron (NM_001161363, intron 1 of 8)	4289	NM_012428	27020		NM_012428	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
107981	chr18	58615121	58616380	+	0	NA	intron (NM_052947, intron 1 of 12)	intron (NM_052947, intron 1 of 12)	13341	NM_052947	115701		NM_052947	ENSG00000198796	ALPK2	HAK	alpha kinase 2	protein-coding
196638	chr6	44278551	44278650	+	0	NA	TTS (NM_182539)	TTS (NM_182539)	8150	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
120763	chr19	45423121	45425300	+	0	NA	promoter-TSS (NM_001983)	promoter-TSS (NM_001983)	-293	NM_001369408	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
100682	chr17	63812651	63813350	+	0	NA	intron (NM_203499, intron 14 of 17)	AluSc5|SINE|Alu	-14431	NM_002805	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
219874	chr8	85276651	85276850	+	0	NA	intron (NM_198584, intron 6 of 6)	LTR12C|LTR|ERV1	31292	NM_198584	377677		NM_198584	ENSG00000185015	CA13	CAXIII	carbonic anhydrase 13	protein-coding
117662	chr19	24032101	24032300	+	0	NA	Intergenic	AluJo|SINE|Alu	-1205	NM_001278661	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
151125	chr21	44889771	44890630	+	0	NA	exon (NM_001303238, exon 12 of 16)	exon (NM_001303238, exon 12 of 16)	-16297	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
83732	chr16	28599171	28600100	+	0	NA	Intergenic	Intergenic	-2565	NM_001363863	6799		NM_001054	ENSG00000197165	SULT1A2	HAST4|P-PST|P-PST 2|ST1A2|STP2|TSPST2	sulfotransferase family 1A member 2	protein-coding
16915	chr1	155889051	155889350	+	0	NA	Intergenic	AluJo|SINE|Alu	21718	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
170803	chr3	189143551	189144030	+	0	NA	Intergenic	MIRc|SINE|MIR	-28181	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
86553	chr16	67192911	67193730	+	0	NA	intron (NM_001950, intron 3 of 9)	intron (NM_001950, intron 3 of 9)	1165	NM_001950	1874		NM_001950	ENSG00000205250	E2F4	E2F-4	E2F transcription factor 4	protein-coding
184677	chr5	108377001	108377400	+	0	NA	intron (NM_001163315, intron 1 of 8)	L1M4a1|LINE|L1	4898	NM_001163315	64839		NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
62835	chr13	109777921	109778480	+	0	NA	intron (NM_003749, intron 1 of 1)	MIRc|SINE|MIR	8383	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
63355	chr13	114035601	114036550	+	0	NA	intron (NM_001320822, intron 4 of 23).2	intron (NM_001320822, intron 4 of 23).2	41880	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
27767	chr10	35342351	35342450	+	0	NA	intron (NM_001282852, intron 1 of 8)	intron (NM_001282852, intron 1 of 8)	5526	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
122833	chr19	50420071	50420550	+	0	NA	intron (NM_003121, intron 2 of 5)	intron (NM_003121, intron 2 of 5)	1372	NM_001243999	6689		NM_003121	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor	protein-coding
110855	chr19	2601151	2601450	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-29415	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
190066	chr5	177607301	177608100	+	0	NA	intron (NM_007255, intron 3 of 5)	intron (NM_007255, intron 3 of 5)	7568	NM_007255	11285		NM_007255	ENSG00000027847	B4GALT7	EDSP1|EDSSLA|EDSSPD1|XGALT1|XGPT|XGPT1	beta-1,4-galactosyltransferase 7	protein-coding
32	chr1	181401	182400	+	0	NA	promoter-TSS (NR_148357)	promoter-TSS (NR_148357)	-488	NR_148357	102725121		NR_148357		DDX11L17	-	DEAD/H-box helicase 11 like 17 (pseudogene)	pseudo
39139	chr11	50174321	50174780	+	0	NA	Intergenic	Intergenic	123912	NR_003034	441601		NR_003034	ENSG00000291108	SEPTIN7P11	-	septin 7 pseudogene 11	pseudo
61803	chr13	75537121	75538700	+	0	NA	promoter-TSS (NM_001287393)	promoter-TSS (NM_001287393)	-38	NM_001287392	170622		NM_203495	ENSG00000188243	COMMD6	Acrg	COMM domain containing 6	protein-coding
164703	chr3	67678501	67679250	+	0	NA	intron (NR_109992, intron 3 of 6)	intron (NR_109992, intron 3 of 6)	24178	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
93785	chr17	20275671	20276880	+	0	NA	intron (NM_001033555, intron 10 of 12)	AluJo|SINE|Alu	-44899	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
189715	chr5	176528171	176528750	+	0	NA	3' UTR (NM_014901, exon 11 of 11)	3' UTR (NM_014901, exon 11 of 11)	8942	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
112912	chr19	7646151	7646600	+	0	NA	intron (NM_006949, intron 16 of 18)	intron (NM_006949, intron 16 of 18)	9265	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
224550	chr9	19376751	19377680	+	0	NA	intron (NM_001010, intron 4 of 5)	intron (NM_001010, intron 4 of 5)	3021	NM_001010	6194		NM_001010	ENSG00000137154	RPS6	S6|eS6	ribosomal protein S6	protein-coding
238683	chrX	154055151	154055900	+	0	NA	intron (NM_001369393, intron 1 of 3)	AluSq|SINE|Alu	-35536	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
206318	chr7	30287451	30287830	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-1555	NR_136267	105375218		NR_136267		LOC105375218	-	uncharacterized LOC105375218	ncRNA
152992	chr22	23153751	23154050	+	0	NA	intron (NM_004914, intron 5 of 10)	AluSz|SINE|Alu	8423	NR_146295	9609		NM_004914	ENSG00000100228	RAB36	-	RAB36, member RAS oncogene family	protein-coding
104004	chr17	80100801	80102750	+	0	NA	5' UTR (NM_000152, exon 1 of 20)	5' UTR (NM_000152, exon 1 of 20)	194	NM_000152	2548		NM_000152	ENSG00000171298	GAA	LYAG	alpha glucosidase	protein-coding
128578	chr2	60905871	60906350	+	0	NA	intron (NM_001291746, intron 4 of 9)	THE1A|LTR|ERVL-MaLR	24536	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133378	chr2	118034901	118035130	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-20945	NM_019044	54520		NM_019044	ENSG00000125633	CCDC93	-	coiled-coil domain containing 93	protein-coding
235608	chrX	47831821	47832100	+	0	NA	Intergenic	Intergenic	-4942	NM_001378152	347344		NM_007137	ENSG00000197779	ZNF81	HFZ20|MRX45|dJ54B20.6	zinc finger protein 81	protein-coding
232761	chr9	136670801	136671030	+	0	NA	TTS (NR_029695)	TTS (NR_029695)	313	NR_029695	406913		NR_029695	ENSG00000199161	MIR126	MIRN126|miRNA126|mir-126	microRNA 126	ncRNA
10245	chr1	63593051	63595230	+	0	NA	5' UTR (NM_001172819, exon 1 of 11)	5' UTR (NM_001172819, exon 1 of 11)	331	NM_001172819	5236		NM_002633	ENSG00000079739	PGM1	CDG1T|GSD14	phosphoglucomutase 1	protein-coding
101684	chr17	68398701	68399350	+	0	NA	intron (NM_001352901, intron 10 of 11)	intron (NM_001352901, intron 10 of 11)	-14598	NM_001278433	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
112283	chr19	5824151	5824250	+	0	NA	exon (NM_004558, exon 2 of 3)	exon (NM_004558, exon 2 of 3)	14592	NM_001040701	2528		NM_000150	ENSG00000156413	FUT6	FCT3A|FT1A|Fuc-TVI|FucT-VI	fucosyltransferase 6	protein-coding
105890	chr18	3269151	3269700	+	0	NA	intron (NM_001144945, intron 1 of 3)	L2|LINE|L2	6706	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
183025	chr5	73159921	73160980	+	0	NA	Intergenic	Intergenic	-9858	NR_134252	105379030		NR_134252	ENSG00000251599	LOC105379030	-	uncharacterized LOC105379030	ncRNA
217117	chr8	25001551	25001850	+	0	NA	Intergenic	Intergenic	-45088	NM_006158	4747		NM_006158	ENSG00000277586	NEFL	CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110	neurofilament light chain	protein-coding
58594	chr12	132466271	132466630	+	0	NA	Intergenic	Intergenic	-23701	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
104331	chr17	80963021	80964050	+	0	NA	intron (NM_020761, intron 33 of 33)	CpG	7678	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
230831	chr9	129068651	129071180	+	0	NA	non-coding (NR_138424, exon 15 of 16)	non-coding (NR_138424, exon 15 of 16)	-11196	NM_020438	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
18962	chr1	168576071	168576830	+	0	NA	promoter-TSS (NM_002995)	promoter-TSS (NM_002995)	-155	NM_002995	6375		NM_002995	ENSG00000143184	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	X-C motif chemokine ligand 1	protein-coding
108614	chr18	75455521	75456250	+	0	NA	Intergenic	CpG	-28182	NM_001303482	284274		NM_001037331	ENSG00000206026	SMIM21	C18orf62	small integral membrane protein 21	protein-coding
14557	chr1	144919051	144919550	+	0	NA	non-coding (NR_104189, exon 4 of 4).2	non-coding (NR_104189, exon 4 of 4).2	-174996	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
22610	chr1	223363271	223365090	+	0	NA	promoter-TSS (NM_017982)	promoter-TSS (NM_017982)	-4	NM_017982	55061		NM_017982	ENSG00000143502	SUSD4	PRO222	sushi domain containing 4	protein-coding
235958	chrX	53423901	53424330	+	0	NA	intron (NM_001031745, intron 2 of 7)	intron (NM_001031745, intron 2 of 7)	1242	NM_001031745	158787		NM_144968	ENSG00000158423	RIBC1	2610028I09Rik	RIB43A domain with coiled-coils 1	protein-coding
193505	chr6	30575551	30575900	+	0	NA	intron (NM_001090, intron 1 of 23).3	L2a|LINE|L2	4283	NM_001025091	23		NM_001090	ENSG00000204574	ABCF1	ABC27|ABC50	ATP binding cassette subfamily F member 1	protein-coding
231613	chr9	131566821	131567080	+	0	NA	Intergenic	AluYf1|SINE|Alu	21427	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
23585	chr1	229623001	229623400	+	0	NA	intron (NM_014409, intron 1 of 4)	AluSq2|SINE|Alu	2847	NM_014409	27097		NM_014409	ENSG00000135801	TAF5L	PAF65B	TATA-box binding protein associated factor 5 like	protein-coding
50618	chr12	48685371	48686000	+	0	NA	Intergenic	L2a|LINE|L2	-3447	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
166871	chr3	123584251	123586500	+	0	NA	promoter-TSS (NM_001329787)	promoter-TSS (NM_001329787)	-138	NR_121654	100506826		NR_038266	ENSG00000239523	MYLK-AS1	-	MYLK antisense RNA 1	ncRNA
232490	chr9	136254851	136255180	+	0	NA	exon (NM_001378188, exon 26 of 26)	exon (NM_001378188, exon 26 of 26)	-9203	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
230516	chr9	128319401	128319930	+	0	NA	intron (NM_001329861, intron 1 of 6)	AluSz6|SINE|Alu	2553	NM_001329862	26995		NM_015679	ENSG00000167112	TRUB2	CLONE24922	TruB pseudouridine synthase family member 2	protein-coding
4992	chr1	24323451	24323850	+	0	NA	intron (NM_021180, intron 1 of 15)	MIRb|SINE|MIR	610	NM_021180	57822		NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding
97567	chr17	44089571	44090130	+	0	NA	intron (NM_001382393, intron 11 of 26)	AluSz|SINE|Alu	18939	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
114587	chr19	12935951	12936050	+	0	NA	Intergenic	AluJb|SINE|Alu	-2289	NM_004461	2193		NM_004461	ENSG00000179115	FARSA	CML33|FARSL|FARSLA|FRSA|PheHA|RILDBC2	phenylalanyl-tRNA synthetase subunit alpha	protein-coding
87734	chr16	75146571	75146930	+	0	NA	Intergenic	AluJb|SINE|Alu	-1774	NM_001318472	162239		NM_153688	ENSG00000184517	ZFP1	ZNF475	ZFP1 zinc finger protein	protein-coding
83536	chr16	27552571	27552930	+	0	NA	intron (NM_015202, intron 1 of 27)	AluSp|SINE|Alu	2606	NM_015202	23247		NM_015202	ENSG00000047578	KATNIP	JBTS26|KIAA0556	katanin interacting protein	protein-coding
46988	chr12	40621	40900	+	0	NA	Intergenic	MLT1F2-int|LTR|ERVL-MaLR	-2627	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
187485	chr5	142161751	142162050	+	0	NA	Intergenic	AluSq2|SINE|Alu	53121	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
103155	chr17	77420951	77422080	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	16438	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
65590	chr14	52125321	52125830	+	0	NA	Intergenic	Intergenic	-56516	NM_007361	22795		NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
139096	chr2	218890071	218891030	+	0	NA	intron (NM_025216, intron 3 of 3)	L2b|LINE|L2	9698	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
202503	chr6	158503951	158504130	+	0	NA	exon (NM_020245, exon 13 of 14)	exon (NM_020245, exon 13 of 14)	-32600	NM_020823	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
212019	chr7	114921451	114921900	+	0	NA	promoter-TSS (NM_001166346)	promoter-TSS (NM_001166346)	-479	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
101783	chr17	73192211	73194230	+	0	NA	exon (NM_018714, exon 1 of 14)	exon (NM_018714, exon 1 of 14)	165	NM_018714	9382		NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
9126	chr1	45347801	45348600	+	0	NA	intron (NM_007170, intron 5 of 10)	intron (NM_007170, intron 5 of 10)	-7730	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
115622	chr19	16085021	16085480	+	0	NA	intron (NM_001367837, intron 2 of 7)	AluJr|SINE|Alu	8234	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
154481	chr22	35629171	35629330	+	0	NA	Intergenic	AluSq|SINE|Alu	-5896	NM_001382809	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
70623	chr14	102811121	102811380	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	33771	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
238784	chrX	154370801	154372100	+	0	NA	intron (NM_001110556, intron 1 of 47)	CpG-30192	3184	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
179276	chr4	176324671	176325830	+	0	NA	intron (NM_021928, intron 3 of 4)	AluSq|SINE|Alu	5284	NM_021928	60559		NM_021928	ENSG00000129128	SPCS3	PRO3567|SPC22|SPC22/23|SPC23|SPC3|YLR066W	signal peptidase complex subunit 3	protein-coding
121662	chr19	47495151	47495330	+	0	NA	intron (NR_038452, intron 3 of 3)	AluJo|SINE|Alu	10958	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
204207	chr7	2510401	2513550	+	0	NA	promoter-TSS (NM_001166355)	promoter-TSS (NM_001166355)	-554	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
167250	chr3	128497521	128498330	+	0	NA	intron (NR_125398, intron 2 of 2)	CpG	-4724	NM_032638	2624		NM_032638	ENSG00000179348	GATA2	DCML|IMD21|MONOMAC|NFE1B	GATA binding protein 2	protein-coding
134209	chr2	134621771	134622130	+	0	NA	intron (NM_030923, intron 2 of 7)	L1MB7|LINE|L1	97050	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
144480	chr20	35618541	35620230	+	0	NA	intron (NM_001317931, intron 9 of 11)	CpG-17676	3501	NM_001317931	6676		NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
37397	chr11	17169801	17170000	+	0	NA	intron (NM_002645, intron 1 of 32)	intron (NM_002645, intron 1 of 32)	38086	NM_002645	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
38456	chr11	45382251	45382550	+	0	NA	intron (NR_122071, intron 3 of 4)	MLT1C|LTR|ERVL-MaLR	11003	NR_122071	399886		NR_122071	ENSG00000255267	LINC02687	-	long intergenic non-protein coding RNA 2687	ncRNA
59832	chr13	30453901	30454380	+	0	NA	Intergenic	AluYc|SINE|Alu	10187	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
46239	chr11	124672551	124674430	+	0	NA	promoter-TSS (NM_017425)	promoter-TSS (NM_017425)	249	NM_170601	54414		NM_018978	ENSG00000110013	SIAE	AIS6|CSE-C|CSEC|LSE|YSG2	sialic acid acetylesterase	protein-coding
65565	chr14	51947451	51947750	+	0	NA	intron (NM_053064, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	-29029	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
187618	chr5	142974401	142974730	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-105655	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
160082	chr3	18778371	18778830	+	0	NA	Intergenic	Intergenic	-333008	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
157947	chr22	49798671	49799480	+	0	NA	exon (NM_001349942, exon 4 of 13)	exon (NM_001349942, exon 4 of 13)	25256	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
229370	chr9	121073051	121073350	+	0	NA	intron (NM_001317163, intron 1 of 40)	intron (NM_001317163, intron 1 of 40)	1665	NM_001317163	727		NM_001735	ENSG00000106804	C5	C5D|C5a|C5b|CPAMD4|ECLZB	complement C5	protein-coding
231714	chr9	131741201	131741400	+	0	NA	Intergenic	Intergenic	-1224	NM_001304275	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
229845	chr9	126146321	126146600	+	0	NA	Intergenic	MER74A|LTR|ERVL	129455	NR_121584	101929116		NR_121584	ENSG00000288537	LOC101929116	-	uncharacterized LOC101929116	ncRNA
67849	chr14	74018251	74019690	+	0	NA	promoter-TSS (NM_025057)	promoter-TSS (NM_025057)	318	NM_001382257	957		NM_001249	ENSG00000187097	ENTPD5	CD39L4|NTPDase-5|PCPH	ectonucleoside triphosphate diphosphohydrolase 5 (inactive)	protein-coding
2431	chr1	9603751	9604450	+	0	NA	3' UTR (NM_001010866, exon 6 of 6)	3' UTR (NM_001010866, exon 6 of 6)	15189	NM_001130924	199953		NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding
54250	chr12	84842551	84842650	+	0	NA	Intergenic	Intergenic	70199	NM_001146335	55117		NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding
108713	chr18	77078021	77078280	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	54633	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
125041	chr2	9605301	9605900	+	0	NA	intron (NM_006826, intron 2 of 5)	AluSz|SINE|Alu	25397	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
139068	chr2	218857471	218857850	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-2145	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
176746	chr4	101526971	101527730	+	0	NA	Intergenic	L2|LINE|L2	179573	NR_033874	90024		NR_033874	ENSG00000254531	FLJ20021	-	uncharacterized LOC90024	ncRNA
35476	chr11	1487401	1487600	+	0	NA	promoter-TSS (NM_001172223)	promoter-TSS (NM_001172223)	-721	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
26578	chr10	21989521	21989800	+	0	NA	intron (NM_022365, intron 1 of 11)	L1MEi|LINE|L1	14070	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
34449	chr10	132430621	132431530	+	0	NA	Intergenic	Intergenic	-14114	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
212313	chr7	127250251	127250350	+	0	NA	intron (NM_001371083, intron 1 of 11)	intron (NM_001371083, intron 1 of 11)	1955	NM_001371088	2918		NM_000845	ENSG00000179603	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	glutamate metabotropic receptor 8	protein-coding
11034	chr1	84969401	84971050	+	0	NA	intron (NM_153259, intron 1 of 13)	intron (NM_153259, intron 1 of 13)	26888	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
29556	chr10	71384201	71384700	+	0	NA	Intergenic	Intergenic	-12470	NM_022124	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
177156	chr4	108137121	108137650	+	0	NA	intron (NM_016269, intron 3 of 11)	L1PB1|LINE|L1	29412	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
210015	chr7	93236851	93237150	+	0	NA	intron (NM_024553, intron 1 of 11)	AluY|SINE|Alu	4634	NM_017667	55610		NM_017667	ENSG00000004766	VPS50	CCDC132|NEDMSC|VPS54L	VPS50 subunit of EARP/GARPII complex	protein-coding
190232	chr5	178249001	178250050	+	0	NA	intron (NM_173465, intron 18 of 28)	intron (NM_173465, intron 18 of 28)	-16703	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
84881	chr16	31186901	31187350	+	0	NA	intron (NM_001170937, intron 7 of 14)	intron (NM_001170937, intron 7 of 14)	6986	NM_004960	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
193164	chr6	29684121	29684380	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	-3098	NM_001109809	346171		NM_001109809	ENSG00000204644	ZFP57	C6orf40|TNDM1|ZNF698|bA145L22|bA145L22.2	ZFP57 zinc finger protein	protein-coding
38305	chr11	43680071	43681280	+	0	NA	promoter-TSS (NM_016142)	promoter-TSS (NM_016142)	-63	NM_016142	51144		NM_016142	ENSG00000149084	HSD17B12	KAR|SDR12C1	hydroxysteroid 17-beta dehydrogenase 12	protein-coding
136522	chr2	177254151	177254850	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	1510	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
27949	chr10	42082471	42083030	+	0	NA	Intergenic	Intergenic	285295	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
106288	chr18	12744101	12744380	+	0	NA	intron (NR_110763, intron 1 of 1)	intron (NR_110763, intron 1 of 1)	5182	NR_110763	100996324		NR_110763		LINC01882	-	long intergenic non-protein coding RNA 1882	ncRNA
169170	chr3	156679421	156679950	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	3021	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
131730	chr2	98269371	98269530	+	0	NA	non-coding (NR_144296, exon 22 of 29)	non-coding (NR_144296, exon 22 of 29)	-77006	NM_001079878	1261		NM_001298	ENSG00000144191	CNGA3	ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3	cyclic nucleotide gated channel subunit alpha 3	protein-coding
184699	chr5	109016351	109016650	+	0	NA	intron (NM_005246, intron 13 of 19)	MamRTE1|LINE|RTE-BovB	91894	NM_001308031	2241		NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding
229527	chr9	122821451	122821750	+	0	NA	intron (NM_005388, intron 3 of 3)	intron (NM_005388, intron 3 of 3)	6988	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
174444	chr4	39702801	39703000	+	0	NA	intron (NM_001111113, intron 1 of 4)	MER20|DNA|hAT-Charlie	4764	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
84188	chr16	29846521	29846780	+	0	NA	intron (NM_017458, intron 13 of 14)	AluSq|SINE|Alu	16135	NM_001293204	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
82591	chr16	18800871	18802430	+	0	NA	promoter-TSS (NM_001313858)	promoter-TSS (NM_001313858)	-101	NM_015161	23204		NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding
133901	chr2	130169301	130169500	+	0	NA	intron (NM_017951, intron 8 of 19)	L1MC4|LINE|L1	12202	NR_033231	55627		NM_017751	ENSG00000136699	SMPD4	NEDMABA|NEDMEBA|NET13|NSMASE-3|NSMASE3|SKNY	sphingomyelin phosphodiesterase 4	protein-coding
216508	chr8	20268421	20268680	+	0	NA	intron (NM_021020, intron 1 of 3)	intron (NM_021020, intron 1 of 3)	4985	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
64274	chr14	23324801	23325000	+	0	NA	3' UTR (NM_001360551, exon 6 of 6)	3' UTR (NM_001360551, exon 6 of 6)	2894	NM_001360552	8106		NM_004643	ENSG00000100836	PABPN1	OPMD|PAB2|PABII|PABP-2|PABP2	poly(A) binding protein nuclear 1	protein-coding
30312	chr10	75396851	75397150	+	0	NA	TTS (NM_032772)	TTS (NM_032772)	-4528	NR_024421	100131213		NR_024421	ENSG00000237149	ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	ncRNA
42294	chr11	68412951	68413250	+	0	NA	intron (NM_002335, intron 11 of 22)	intron (NM_002335, intron 11 of 22)	-47652	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
114806	chr19	13796651	13797250	+	0	NA	intron (NM_023072, intron 1 of 12)	intron (NM_023072, intron 1 of 12)	1507	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
90211	chr17	492821	493750	+	0	NA	Intergenic	AluY|SINE|Alu	-47345	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
56157	chr12	111398351	111398650	+	0	NA	Intergenic	MIRb|SINE|MIR	-7423	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
84723	chr16	30912471	30912830	+	0	NA	Intergenic	AluSz|SINE|Alu	-10201	NM_001382780	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
55088	chr12	96986921	96987180	+	0	NA	Intergenic	Intergenic	79584	NM_001135175	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
99552	chr17	50382001	50382200	+	0	NA	TTS (NM_001166131)	TTS (NM_001166131)	8871	NM_152463	146956		NM_152463	ENSG00000154920	EME1	MMS4L|SLX2A	essential meiotic structure-specific endonuclease 1	protein-coding
133651	chr2	127049801	127051780	+	0	NA	intron (NM_139345, intron 14 of 15)	intron (NM_139345, intron 14 of 15)	31275	NM_001320634	274		NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|CNM2|SH3P9	bridging integrator 1	protein-coding
43975	chr11	93895401	93895630	+	0	NA	Intergenic	Intergenic	-44897	NM_001144871	387804		NM_001144871	ENSG00000214376	VSTM5	C11orf90	V-set and transmembrane domain containing 5	protein-coding
98500	chr17	47362371	47362530	+	0	NA	intron (NM_152347, intron 10 of 24)	LTR13|LTR|ERVK	38495	NM_152347	124989		NM_152347	ENSG00000178852	EFCAB13	C17orf57	EF-hand calcium binding domain 13	protein-coding
82262	chr16	15143301	15143830	+	0	NA	Intergenic	Intergenic	-6606	NR_123721	105369154		NR_123721	ENSG00000270580	PKD1P6-NPIPP1	-	PKD1P6-NPIPP1 readthrough	pseudo
119595	chr19	40742771	40742930	+	0	NA	intron (NR_148548, intron 6 of 8)	intron (NR_148548, intron 6 of 8)	7627	NR_148549	284325		NM_198476	ENSG00000188493	ACTMAP	C19orf54	actin maturation protease	protein-coding
159515	chr3	14409601	14410030	+	0	NA	intron (NR_103507, intron 1 of 13)	MIR3|SINE|MIR	7209	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
11817	chr1	92838521	92839150	+	0	NA	intron (NR_146333, intron 6 of 7)	intron (NR_146333, intron 6 of 7)	1546	NR_000006	6083		NR_000006	ENSG00000206680	SNORD21	RNU21|U21	small nucleolar RNA, C/D box 21	snoRNA
99044	chr17	48891851	48894900	+	0	NA	intron (NM_005175, intron 1 of 4)	intron (NM_005175, intron 1 of 4)	588	NM_005175	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
9313	chr1	46525221	46525680	+	0	NA	Intergenic	Intergenic	10065	NM_001357063	105378696		NM_001357063	ENSG00000282881	TMEM275	-	transmembrane protein 275	protein-coding
108136	chr18	62447871	62448030	+	0	NA	Intergenic	MLT2A2|LTR|ERVL	-75075	NM_017742	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
30588	chr10	80146201	80146780	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	13760	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
223060	chr8	143385151	143386130	+	0	NA	Intergenic	Intergenic	16764	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
69718	chr14	98205801	98206400	+	0	NA	Intergenic	Intergenic	-227976	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
208630	chr7	72984471	72984700	+	0	NA	Intergenic	Intergenic	14903	NR_104007	100101148		NR_104007		FKBP6P1	-	FKBP6 pseudogene 1	pseudo
16630	chr1	155093401	155093850	+	0	NA	Intergenic	Intergenic	14788	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
8097	chr1	39102321	39103580	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	18783	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
94384	chr17	28946001	28946800	+	0	NA	intron (NM_020889, intron 2 of 8)	intron (NM_020889, intron 2 of 8)	5118	NM_020889	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
155928	chr22	39624601	39624800	+	0	NA	intron (NM_001003406, intron 4 of 35)	MIR3|SINE|MIR	53947	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
76691	chr15	75740401	75740800	+	0	NA	promoter-TSS (NR_024595)	promoter-TSS (NR_024595)	-523	NR_024595	100128285		NR_024595		DNM1P35	DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88	dynamin 1 pseudogene 35	pseudo
15582	chr1	150573601	150574200	+	0	NA	TTS (NM_182763)	TTS (NM_182763)	652	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
31553	chr10	97185301	97185500	+	0	NA	intron (NR_037909, intron 11 of 14)	CpG	559	NM_003061	6585		NM_003061	ENSG00000187122	SLIT1	MEGF4|SLIL1|SLIT-1|SLIT3	slit guidance ligand 1	protein-coding
139172	chr2	219202721	219202980	+	0	NA	Intergenic	AluY|SINE|Alu	-3932	NM_138802	130617		NM_138802	ENSG00000158552	ZFAND2B	AIRAPL	zinc finger AN1-type containing 2B	protein-coding
161732	chr3	44227621	44227880	+	0	NA	Intergenic	L1ME3B|LINE|L1	-14136	NM_001145030	375337		NM_001145030	ENSG00000173769	TOPAZ1	C3orf77	testis and ovary specific TOPAZ 1	protein-coding
64754	chr14	34559771	34560150	+	0	NA	Intergenic	Intergenic	-3571	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
169723	chr3	172153321	172153800	+	0	NA	intron (NM_022763, intron 3 of 25)	intron (NM_022763, intron 3 of 25)	113029	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
52693	chr12	56496601	56497350	+	0	NA	Intergenic	LTR13|LTR|ERVK	-8561	NM_001280798	27165		NM_013267	ENSG00000135423	GLS2	GA|GLS|LGA|hLGA	glutaminase 2	protein-coding
166520	chr3	114362651	114363030	+	0	NA	intron (NR_038993, intron 4 of 8)	intron (NR_038993, intron 4 of 8)	11029	NR_038993	100131117		NR_038993	ENSG00000241560	ZBTB20-AS1	-	ZBTB20 antisense RNA 1	ncRNA
234765	chrX	23781021	23782050	+	0	NA	Intergenic	Intergenic	-1623	NR_027783	6303		NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
179249	chr4	174497321	174497780	+	0	NA	intron (NM_001256306, intron 2 of 4)	AluSc|SINE|Alu	24938	NM_001363574	3248		NM_000860	ENSG00000164120	HPGD	15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1	15-hydroxyprostaglandin dehydrogenase	protein-coding
5517	chr1	25793571	25794100	+	0	NA	Intergenic	MER81|DNA|hAT-Blackjack	-6358	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
37027	chr11	12110001	12111380	+	0	NA	promoter-TSS (NM_001346292)	promoter-TSS (NM_001346292)	100	NR_144416	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
44330	chr11	102407321	102408300	+	0	NA	intron (NM_052932, intron 2 of 4)	MLT1C|LTR|ERVL-MaLR	44955	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
218869	chr8	60525501	60525900	+	0	NA	intron (NM_001242644, intron 1 of 6)	intron (NM_001242644, intron 1 of 6)	8713	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
100033	chr17	57997471	57998700	+	0	NA	Intergenic	AluSx1|SINE|Alu	9161	NM_001078166	6426		NM_006924	ENSG00000136450	SRSF1	ASF|NEDFBA|SF2|SF2p33|SFRS1|SRp30a	serine and arginine rich splicing factor 1	protein-coding
223119	chr8	143469521	143469780	+	0	NA	intron (NM_015117, intron 5 of 11)	intron (NM_015117, intron 5 of 11)	36598	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
40182	chr11	62900401	62900600	+	0	NA	Intergenic	Intergenic	18801	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
187992	chr5	149526951	149527680	+	0	NA	intron (NM_001892, intron 2 of 9)	AluSx1|SINE|Alu	23050	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
102335	chr17	75435651	75436380	+	0	NA	Intergenic	AluSx|SINE|Alu	-20620	NM_014738	9772		NM_014738	ENSG00000177728	TMEM94	IDDCDF|KIAA0195	transmembrane protein 94	protein-coding
163013	chr3	49791501	49792050	+	0	NA	exon (NM_001007540, exon 17 of 19)	exon (NM_001007540, exon 17 of 19)	-5233	NM_153273	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
131366	chr2	96201401	96202100	+	0	NA	intron (NM_001385622, intron 1 of 7)	AluSz6|SINE|Alu	-6666	NR_046322	285033		NM_001037228		STARD7-AS1	-	STARD7 antisense RNA 1	ncRNA
15318	chr1	149878851	149878950	+	0	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	7782	NM_003528	8349		NM_003528	ENSG00000184678	H2BC21	GL105|H2B|H2B-GL105|H2B.1|H2BE|H2BFQ|H2BGL105|H2BQ|HIST2H2BE	H2B clustered histone 21	protein-coding
67413	chr14	69818721	69819180	+	0	NA	Intergenic	Intergenic	7190	NR_149012	100506358		NR_149012		LOC100506358	-	uncharacterized LOC100506358	ncRNA
145507	chr20	43966251	43966750	+	0	NA	intron (NM_032883, intron 2 of 9)	AluSz|SINE|Alu	20604	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
226177	chr9	64739651	64739750	+	0	NA	intron (NR_121570, intron 1 of 4).2	MSTA|LTR|ERVL-MaLR	5666	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
33009	chr10	110613171	110613730	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-30886	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
66216	chr14	61317901	61318100	+	0	NA	Intergenic	L2b|LINE|L2	-3443	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
56359	chr12	113092821	113093480	+	0	NA	intron (NM_004416, intron 3 of 9)	CpG	36420	NM_004416	1840		NM_004416	ENSG00000135144	DTX1	RNF140|hDx-1	deltex E3 ubiquitin ligase 1	protein-coding
111131	chr19	3270951	3272230	+	0	NA	intron (NM_021938, intron 2 of 12)	intron (NM_021938, intron 2 of 12)	46312	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
8407	chr1	40403401	40403630	+	0	NA	intron (NM_001198980, intron 1 of 9)	AluSz6|SINE|Alu	6715	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
180691	chr5	21486671	21486830	+	0	NA	intron (NR_027026, intron 3 of 4)	THE1B-int|LTR|ERVL-MaLR	27270	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
68985	chr14	91470451	91470950	+	0	NA	intron (NR_158976, intron 11 of 16)	MIR3|SINE|MIR	39610	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
238298	chrX	149490601	149490830	+	0	NA	intron (NM_001166550, intron 6 of 8)	intron (NM_001166550, intron 6 of 8)	14591	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
93461	chr17	18780251	18781970	+	0	NA	promoter-TSS (NM_016078)	promoter-TSS (NM_016078)	-73	NM_016078	51030		NM_016078	ENSG00000171928	TVP23B	CGI-148|FAM18B|FAM18B1|NPD008|YDR084C	trans-golgi network vesicle protein 23 homolog B	protein-coding
178910	chr4	158671181	158672980	+	0	NA	promoter-TSS (NM_001008393)	promoter-TSS (NM_001008393)	-21	NM_001281737	2110		NM_004453	ENSG00000171503	ETFDH	ETFQO|MADD	electron transfer flavoprotein dehydrogenase	protein-coding
174050	chr4	26883971	26885030	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	23659	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
182947	chr5	71213371	71213950	+	0	NA	intron (NR_146391, intron 3 of 9)	THE1B-int|LTR|ERVL-MaLR	-5529	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
152618	chr22	21423201	21423480	+	0	NA	intron (NM_015094, intron 1 of 2)	intron (NM_015094, intron 1 of 2)	5969	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
112698	chr19	7074921	7075380	+	0	NA	intron (NM_001044388, intron 3 of 7)	intron (NM_001044388, intron 3 of 7)	5447	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
141022	chr2	238170001	238170200	+	0	NA	TTS (NM_030768)	TTS (NM_030768)	11130	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
115400	chr19	15282001	15282450	+	0	NA	intron (NM_001379291, intron 1 of 19)	MER58B|DNA|hAT-Charlie	-1774	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
214236	chr7	148871121	148872050	+	0	NA	intron (NM_001203248, intron 1 of 19)	AluJb|SINE|Alu	11900	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
149033	chr21	14652651	14653150	+	0	NA	Intergenic	L1MA4|LINE|L1	-9793	NM_001256579	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
93800	chr17	20472501	20472700	+	0	NA	Intergenic	Intergenic	-5065	NM_001042685	284194		NM_001042685	ENSG00000170298	LGALS9B	-	galectin 9B	protein-coding
152485	chr22	20860201	20860400	+	0	NA	intron (NM_004782, intron 1 of 4)	AluSx|SINE|Alu	1293	NM_004782	9342		NM_004782	ENSG00000099940	SNAP29	CEDNIK|SNAP-29	synaptosome associated protein 29	protein-coding
32864	chr10	110075401	110075880	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-67259	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
4263	chr1	19650771	19651530	+	0	NA	intron (NM_001278166, intron 1 of 3)	MIRb|SINE|MIR	3540	NM_001278166	4681		NM_005380	ENSG00000158747	NBL1	D1S1733E|DAN|DAND1|NB|NO3	NBL1, DAN family BMP antagonist	protein-coding
104468	chr17	81116571	81117180	+	0	NA	TTS (NM_004920)	TTS (NM_004920)	8498	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
171980	chr4	924771	925300	+	0	NA	intron (NM_005255, intron 1 of 27)	AluSz6|SINE|Alu	7281	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
213756	chr7	140480621	140481050	+	0	NA	Intergenic	Intergenic	-1266	NM_001145125	23608		NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding
77852	chr15	88660771	88660930	+	0	NA	Intergenic	L1MEh|LINE|L1	21834	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
20427	chr1	198253311	198253450	+	0	NA	intron (NM_133494, intron 3 of 9)	intron (NM_133494, intron 3 of 9)	96382	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
169624	chr3	171274071	171274580	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-167566	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
238266	chrX	148497971	148498330	+	0	NA	Intergenic	Intergenic	-2467	NM_001169124	2334		NM_002025	ENSG00000155966	AFF2	FMR2|FMR2P|FRAXE|MRX2|OX19|XLID109	ALF transcription elongation factor 2	protein-coding
173689	chr4	15410801	15411350	+	0	NA	intron (NM_001135171, intron 1 of 2)	intron (NM_001135171, intron 1 of 2)	16839	NR_125911	101929095		NR_125911	ENSG00000249252	C1QTNF7-AS1	-	C1QTNF7 antisense RNA 1	ncRNA
147975	chr20	62986251	62986980	+	0	NA	Intergenic	Intergenic	20349	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
146260	chr20	48935701	48936530	+	0	NA	intron (NM_006420, intron 1 of 38)	SVA_D|Retroposon|SVA	14404	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
106794	chr18	23885751	23886330	+	0	NA	intron (NM_198129, intron 41 of 74)	intron (NM_198129, intron 41 of 74)	13020	NM_001127718	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
130201	chr2	84517801	84518200	+	0	NA	exon (NM_001370, exon 2 of 77)	exon (NM_001370, exon 2 of 77)	1502	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
86082	chr16	57629451	57630050	+	0	NA	intron (NM_001145772, intron 1 of 14)	intron (NM_001145772, intron 1 of 14)	1120	NM_001370454	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
37199	chr11	14319651	14320680	+	0	NA	intron (NM_001177314, intron 1 of 5)	intron (NM_001177314, intron 1 of 5)	38320	NM_001177315	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
112666	chr19	6947721	6947980	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	42996	NR_024075	326342		NM_001080498		ADGRE4P	EMR4|EMR4P|FIRE|GPR127|PGR16	adhesion G protein-coupled receptor E4, pseudogene	pseudo
53894	chr12	70722921	70723180	+	0	NA	intron (NM_130846, intron 2 of 9)	intron (NM_130846, intron 2 of 9)	31558	NR_073474	5801		NM_002849	ENSG00000153233	PTPRR	EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ	protein tyrosine phosphatase receptor type R	protein-coding
207703	chr7	45922701	45923450	+	0	NA	Intergenic	Intergenic	-1803	NM_000598	3486		NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP-3|IBP3|IGFBP-3	insulin like growth factor binding protein 3	protein-coding
212160	chr7	116862201	116863600	+	0	NA	intron (NM_006136, intron 1 of 9)	CpG	313	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
49566	chr12	26932651	26932750	+	0	NA	intron (NM_018164, intron 3 of 16)	MER3|DNA|hAT-Charlie	5281	NM_018164	55726		NM_018164	ENSG00000064102	INTS13	ASUN|C12orf11|GCT1|Mat89Bb|NET48|SPATA30	integrator complex subunit 13	protein-coding
79867	chr16	1504671	1504850	+	0	NA	intron (NM_016111, intron 15 of 20)	AluY|SINE|Alu	11400	NM_016111	9894		NM_016111	ENSG00000100726	TELO2	CLK2|TEL2|YHFS	telomere maintenance 2	protein-coding
186304	chr5	134572771	134573230	+	0	NA	intron (NM_001289985, intron 9 of 11)	intron (NM_001289985, intron 9 of 11)	46892	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
28885	chr10	62780601	62780800	+	0	NA	Intergenic	Intergenic	-24020	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
54770	chr12	94145851	94146650	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	-2327	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
141944	chr20	1274021	1274280	+	0	NA	intron (NM_014723, intron 2 of 5)	MIR|SINE|MIR	7856	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
184970	chr5	113488151	113488730	+	0	NA	promoter-TSS (NM_001085377)	promoter-TSS (NM_001085377)	13	NM_001085377	4163		NM_002387	ENSG00000171444	MCC	MCC1	MCC regulator of WNT signaling pathway	protein-coding
96035	chr17	39442451	39442830	+	0	NA	intron (NM_004774, intron 3 of 16)	AluSp|SINE|Alu	8623	NM_004774	5469		NM_004774	ENSG00000125686	MED1	CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2	mediator complex subunit 1	protein-coding
173560	chr4	10093751	10094300	+	0	NA	intron (NM_005112, intron 2 of 11)	intron (NM_005112, intron 2 of 11)	-15333	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
122443	chr19	49485901	49486300	+	0	NA	3' UTR (NM_001459, exon 9 of 9)	3' UTR (NM_001459, exon 9 of 9)	-1454	NM_001270491	23521		NM_012423	ENSG00000142541	RPL13A	L13A|TSTA1|uL13	ribosomal protein L13a	protein-coding
87472	chr16	71625801	71627080	+	0	NA	exon (NM_052858, exon 1 of 3)	exon (NM_052858, exon 1 of 3)	256	NM_052858	91862		NM_052858	ENSG00000140832	MARVELD3	MARVD3|MRVLDC3	MARVEL domain containing 3	protein-coding
156261	chr22	40411221	40411880	+	0	NA	exon (NM_001282660, exon 12 of 12)	exon (NM_001282660, exon 12 of 12)	40956	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
22041	chr1	210400351	210400880	+	0	NA	exon (NM_001170587, exon 4 of 11)	exon (NM_001170587, exon 4 of 11)	71249	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
149339	chr21	29058351	29058850	+	0	NA	intron (NM_006585, intron 14 of 14)	AluY|SINE|Alu	15048	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
150489	chr21	42681201	42681830	+	0	NA	intron (NM_001001580, intron 1 of 13)	intron (NM_001001580, intron 1 of 13)	27763	NM_001001580	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
186031	chr5	134006651	134006850	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1775	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
104496	chr17	81164671	81165100	+	0	NA	promoter-TSS (NM_001354639)	promoter-TSS (NM_001354639)	-622	NM_001354639	388428		NM_207389	ENSG00000225180	PVALEF	AATK-AS1	parvalbumin like EF-hand containing	protein-coding
33663	chr10	119859501	119860500	+	0	NA	intron (NM_001256379, intron 1 of 15)	intron (NM_001256379, intron 1 of 15)	12843	NM_001256378	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
34813	chr11	284971	285130	+	0	NA	intron (NM_138329, intron 7 of 7)	intron (NM_138329, intron 7 of 7)	-4076	NM_025092	80162		NM_025092	ENSG00000142102	PGGHG	ATHL1	protein-glucosylgalactosylhydroxylysine glucosidase	protein-coding
218735	chr8	58799421	58799880	+	0	NA	Intergenic	Intergenic	-139797	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
5815	chr1	26619351	26619450	+	0	NA	Intergenic	Intergenic	64858	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
121916	chr19	48418521	48419650	+	0	NA	intron (NM_000836, intron 8 of 13)	FLAM_C|SINE|Alu	25417	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
88836	chr16	87491721	87491980	+	0	NA	exon (NM_015144, exon 1 of 13)	exon (NM_015144, exon 1 of 13)	1174	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
207604	chr7	44974751	44974850	+	0	NA	intron (NM_033054, intron 5 of 21)	intron (NM_033054, intron 5 of 21)	4215	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
145886	chr20	45950171	45950730	+	0	NA	intron (NM_022095, intron 21 of 27)	intron (NM_022095, intron 21 of 27)	15767	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
234839	chrX	24471251	24472000	+	0	NA	intron (NM_001142386, intron 1 of 11)	intron (NM_001142386, intron 1 of 11)	6339	NM_005391	5165		NM_005391	ENSG00000067992	PDK3	CMTX6|GS1-358P8.4	pyruvate dehydrogenase kinase 3	protein-coding
104837	chr17	81830651	81830750	+	0	NA	intron (NM_001288798, intron 1 of 6)	AluJo|SINE|Alu	2591	NM_001288798	348262		NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
106693	chr18	23307851	23309000	+	0	NA	intron (NR_148385, intron 13 of 13)	L2a|LINE|L2	129536	NM_032933	85019		NM_032933	ENSG00000134490	TMEM241	C18orf45|SLC35D4|hVVT	transmembrane protein 241	protein-coding
130080	chr2	74496001	74496200	+	0	NA	Intergenic	Intergenic	3503	NM_001282430	85474		NM_001009812	ENSG00000179528	LBX2	LP3727	ladybird homeobox 2	protein-coding
237561	chrX	120752801	120753000	+	0	NA	Intergenic	Intergenic	-122750	NM_152692	29071		NM_152692	ENSG00000171155	C1GALT1C1	AHUS8|C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS	C1GALT1 specific chaperone 1	protein-coding
193932	chr6	31649221	31649480	+	0	NA	exon (NM_001199698, exon 4 of 24)	exon (NM_001199698, exon 4 of 24)	3040	NM_001098534	7917		NM_004639	ENSG00000204463	BAG6	BAG-6|BAT3|D6S52E|G3	BAG cochaperone 6	protein-coding
137252	chr2	192076871	192077030	+	0	NA	intron (NM_001305134, intron 4 of 9)	intron (NM_001305134, intron 4 of 9)	117983	NM_016192	23671		NM_016192	ENSG00000144339	TMEFF2	CT120.2|HPP1|TENB2|TPEF|TR|TR-2	transmembrane protein with EGF like and two follistatin like domains 2	protein-coding
179027	chr4	165115101	165115500	+	0	NA	Intergenic	AluJr|SINE|Alu	-2440	NM_001100389	201931		NM_152681	ENSG00000170088	TMEM192	-	transmembrane protein 192	protein-coding
166377	chr3	113222721	113222980	+	0	NA	intron (NM_001378075, intron 2 of 19)	intron (NM_001378075, intron 2 of 19)	10734	NM_001301861	91653		NM_033254	ENSG00000144857	BOC	Boi|CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
128986	chr2	64726901	64727580	+	0	NA	Intergenic	Intergenic	-73327	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
207954	chr7	54760671	54760830	+	0	NA	intron (NR_110040, intron 1 of 2)	MER44A|DNA|TcMar-Tigger	1437	NR_110040	100996654		NR_110040	ENSG00000234707	SEC61G-DT	-	SEC61G divergent transcript	ncRNA
84206	chr16	29872921	29873680	+	0	NA	exon (NM_001114100, exon 12 of 16)	exon (NM_001114100, exon 12 of 16)	9466	NR_015396	440356		NR_015396	ENSG00000293487	CDIPTOSP	CDIPT-AS1|lnc-CTHCC	CDIP transferase opposite strand, pseudogene	ncRNA
163319	chr3	50364451	50366400	+	0	NA	promoter-TSS (NR_111913)	promoter-TSS (NR_111913)	62	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
41685	chr11	66626471	66627080	+	0	NA	3' UTR (NM_006328, exon 3 of 3)	3' UTR (NM_006328, exon 3 of 3)	10145	NM_006328	10432		NM_006328	ENSG00000239306	RBM14	COAA|PSP2|SIP|SYTIP1|TMEM137	RNA binding motif protein 14	protein-coding
578	chr1	1272751	1273050	+	0	NA	intron (NM_194458, intron 1 of 6)	intron (NM_194458, intron 1 of 6)	954	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
230337	chr9	128004101	128004900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-23511	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
75436	chr15	65797351	65797650	+	0	NA	Intergenic	L2|LINE|L2	-5207	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
139404	chr2	222322171	222322430	+	0	NA	TTS (NR_136638)	TTS (NR_136638)	1639	NR_136639	440934		NR_136638	ENSG00000291155	CT75	-	cancer/testis associated transcript 75	ncRNA
118107	chr19	34481001	34481200	+	0	NA	promoter-TSS (NM_001080436)	promoter-TSS (NM_001080436)	-658	NM_001080436	126374		NM_001080436	ENSG00000142279	WTIP	-	WT1 interacting protein	protein-coding
100339	chr17	59891871	59892030	+	0	NA	intron (NM_001193610, intron 1 of 7)	AluJb|SINE|Alu	993	NM_016261	51174		NM_016261	ENSG00000108423	TUBD1	TUBD	tubulin delta 1	protein-coding
173717	chr4	15791351	15791650	+	0	NA	intron (NR_132660, intron 1 of 6)	SVA_E|Retroposon|SVA	13172	NR_132660	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
143126	chr20	23456381	23457200	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-3914	NM_130794	140880		NM_080830	ENSG00000125831	CST11	CST8L|CTES2|SC13|dJ322G13.6	cystatin 11	protein-coding
176779	chr4	102499071	102499230	+	0	NA	intron (NR_136202, intron 1 of 4)	MLT1C|LTR|ERVL-MaLR	-2209	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
131398	chr2	96269221	96269850	+	0	NA	intron (NM_004804, intron 6 of 6)	intron (NM_004804, intron 6 of 6)	3310	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
91130	chr17	3712501	3713180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-11063	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
133915	chr2	130341621	130343800	+	0	NA	promoter-TSS (NM_001320311)	promoter-TSS (NM_001320311)	-29	NM_001321118	84317		NM_032357	ENSG00000136710	CCDC115	CDG2O|ccp1	coiled-coil domain containing 115	protein-coding
217052	chr8	23335971	23336200	+	0	NA	promoter-TSS (NR_038323)	promoter-TSS (NR_038323)	-123	NR_038323	100507156		NR_038323	ENSG00000253837	LOXL2-AS1	-	LOXL2 antisense RNA 1	ncRNA
207260	chr7	43904501	43904700	+	0	NA	intron (NM_001077664, intron 1 of 5)	intron (NM_001077664, intron 1 of 5)	1996	NM_001204871	100534592		NM_001204871	ENSG00000270617	URGCP-MRPS24	-	URGCP-MRPS24 readthrough	protein-coding
210280	chr7	99419401	99420280	+	0	NA	TTS (NM_003910)	TTS (NM_003910)	10668	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
206975	chr7	38312601	38313050	+	0	NA	Intergenic	Intergenic	-28752	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
43329	chr11	76424521	76424980	+	0	NA	Intergenic	L2c|LINE|L2	-20268	NM_001300942	56946		NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY transcriptional repressor, BRCA2 interacting	protein-coding
55543	chr12	105409921	105410330	+	0	NA	Intergenic	Intergenic	79434	NM_001145199	387882		NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
146703	chr20	50561401	50562400	+	0	NA	intron (NM_002827, intron 2 of 9)	Tigger15a|DNA|TcMar-Tigger	-23886	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
187896	chr5	148830901	148831130	+	0	NA	Intergenic	Intergenic	4404	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
149500	chr21	32578121	32578450	+	0	NA	intron (NM_144659, intron 4 of 4)	intron (NM_144659, intron 4 of 4)	7238	NM_144659	140290		NM_018277	ENSG00000242220	TCP10L	C21orf77|LINC00846|PRED77|TCP10A-1|TCP10A-2	t-complex 10 like	protein-coding
198961	chr6	110880651	110880980	+	0	NA	intron (NM_001287216, intron 1 of 4)	AluSz|SINE|Alu	6031	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
227332	chr9	89451971	89452530	+	0	NA	intron (NM_001371200, intron 2 of 20)	AluY|SINE|Alu	27640	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
114535	chr19	12840521	12841800	+	0	NA	intron (NM_014975, intron 3 of 25)	intron (NM_014975, intron 3 of 25)	2645	NM_014975	22983		NM_014975	ENSG00000105613	MAST1	MCCCHCM|SAST	microtubule associated serine/threonine kinase 1	protein-coding
85010	chr16	31506721	31506980	+	0	NA	intron (NM_022744, intron 2 of 12)	AluJr|SINE|Alu	1541	NM_022744	64755		NM_022744	ENSG00000140688	RUSF1	C16orf58|RUS	RUS family member 1	protein-coding
47307	chr12	1692551	1693080	+	0	NA	intron (NM_001375365, intron 1 of 7).2	MER58A|DNA|hAT-Charlie	1745	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
83616	chr16	28205751	28206300	+	0	NA	intron (NM_015171, intron 1 of 23)	AluSx|SINE|Alu	5940	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
84866	chr16	31172771	31172930	+	0	NA	Intergenic	AluY|SINE|Alu	-7260	NM_001170634	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
36341	chr11	3901671	3902030	+	0	NA	intron (NM_001382571, intron 1 of 9)	AluJb|SINE|Alu	45788	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
130493	chr2	85580451	85580950	+	0	NA	intron (NM_003761, intron 2 of 2)	AluSx1|SINE|Alu	3114	NM_003761	8673		NM_003761	ENSG00000118640	VAMP8	EDB|VAMP-8	vesicle associated membrane protein 8	protein-coding
41184	chr11	65630771	65631130	+	0	NA	intron (NM_032223, intron 27 of 34)	intron (NM_032223, intron 27 of 34)	-5360	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
159501	chr3	14371851	14372050	+	0	NA	Intergenic	Intergenic	-19382	NR_110135	101927565		NR_110135	ENSG00000251576	LINC01267	-	long intergenic non-protein coding RNA 1267	ncRNA
96242	chr17	39817551	39818050	+	0	NA	intron (NM_001257408, intron 2 of 6)	intron (NM_001257408, intron 2 of 6)	-39575	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
216799	chr8	22550851	22552200	+	0	NA	promoter-TSS (NM_005775)	promoter-TSS (NM_005775)	-402	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
120257	chr19	42440351	42441600	+	0	NA	intron (NR_133910, intron 1 of 3)	MER20|DNA|hAT-Charlie	1971	NM_198477	284340		NM_198477	ENSG00000189377	CXCL17	DMC|Dcip1|UNQ473|VCC-1|VCC1	C-X-C motif chemokine ligand 17	protein-coding
12678	chr1	109426001	109427580	+	0	NA	promoter-TSS (NM_002790)	promoter-TSS (NM_002790)	-342	NM_001199773	5686		NM_002790	ENSG00000143106	PSMA5	PSC5|ZETA	proteasome 20S subunit alpha 5	protein-coding
190150	chr5	178114451	178115900	+	0	NA	intron (NM_015111, intron 1 of 4)	MIRc|SINE|MIR	1643	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
87575	chr16	72627251	72627730	+	0	NA	intron (NR_159372, intron 1 of 7)	L1PA2|LINE|L1	37480	NR_126330	101927957		NR_126330	ENSG00000261008	LINC01572	-	long intergenic non-protein coding RNA 1572	ncRNA
126428	chr2	27771051	27772350	+	0	NA	promoter-TSS (NM_004891)	promoter-TSS (NM_004891)	-17	NM_145330	9553		NM_004891	ENSG00000243147	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L|bL33m	mitochondrial ribosomal protein L33	protein-coding
30043	chr10	73809101	73809400	+	0	NA	intron (NR_160744, intron 2 of 14)	intron (NR_160744, intron 2 of 14)	2348	NM_001330107	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
198855	chr6	109376901	109377100	+	0	NA	intron (NM_001142402, intron 3 of 4)	AluJo|SINE|Alu	4739	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
201103	chr6	142850571	142851450	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	94166	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
12367	chr1	101245521	101246200	+	0	NA	Intergenic	AluJr|SINE|Alu	8841	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
22530	chr1	222096151	222096630	+	0	NA	Intergenic	Intergenic	-117870	NR_149057	105372950		NR_149057	ENSG00000238042	LINC02257	-	long intergenic non-protein coding RNA 2257	ncRNA
192984	chr6	28079571	28082130	+	0	NA	5' UTR (NM_003447, exon 1 of 4)	5' UTR (NM_003447, exon 1 of 4)	282	NM_001376492	7718		NM_003447	ENSG00000197279	ZNF165	CT53|LD65|ZSCAN7	zinc finger protein 165	protein-coding
138104	chr2	202272841	202273330	+	0	NA	intron (NM_015934, intron 1 of 14)	AluY|SINE|Alu	-3346	NR_003058	692110		NR_003058	ENSG00000212534	SNORD70	HBII-234|SNORD70A	small nucleolar RNA, C/D box 70	snoRNA
210334	chr7	99499801	99500750	+	0	NA	promoter-TSS (NM_001345968)	promoter-TSS (NM_001345968)	6	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
146604	chr20	50145401	50145850	+	0	NA	intron (NM_199129, intron 1 of 5)	AluSq2|SINE|Alu	8098	NM_001162505	387521		NM_199129	ENSG00000240849	PEDS1	CarF|KUA|TMEM189	plasmanylethanolamine desaturase 1	protein-coding
119407	chr19	40263671	40264680	+	0	NA	intron (NM_001243028, intron 1 of 12)	intron (NM_001243028, intron 1 of 12)	1176	NM_001330511	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
79207	chr16	350271	350600	+	0	NA	intron (NM_181050, intron 1 of 9)	intron (NM_181050, intron 1 of 9)	2288	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
100500	chr17	62037701	62038300	+	0	NA	intron (NM_005121, intron 3 of 29)	intron (NM_005121, intron 3 of 29)	27278	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
220054	chr8	93743101	93743400	+	0	NA	Intergenic	Intergenic	-2241	NM_001377961	389677		NM_203390	ENSG00000183808	RBM12B	MGC:33837	RNA binding motif protein 12B	protein-coding
210001	chr7	93055401	93055850	+	0	NA	Intergenic	Intergenic	62354	NM_017654	54809		NM_017654	ENSG00000205413	SAMD9	C7orf5|DRIF1|M7MLS2|MIRAGE|NFTC|OEF1|OEF2	sterile alpha motif domain containing 9	protein-coding
69003	chr14	91492971	91493730	+	0	NA	intron (NR_158976, intron 2 of 16)	AluJo|SINE|Alu	16960	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
50538	chr12	47906471	47906630	+	0	NA	Intergenic	Intergenic	-1556	NM_001017535	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
117959	chr19	33274071	33274270	+	0	NA	Intergenic	Intergenic	28364	NM_004364	1050		NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	CCAAT enhancer binding protein alpha	protein-coding
189639	chr5	176062101	176062500	+	0	NA	promoter-TSS (NR_103794)	promoter-TSS (NR_103794)	-245	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
118066	chr19	34317451	34318200	+	0	NA	intron (NM_014686, intron 2 of 13)	intron (NM_014686, intron 2 of 13)	-46915	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
187437	chr5	142094451	142094550	+	0	NA	Intergenic	AluJb|SINE|Alu	-14279	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
50769	chr12	49029921	49030550	+	0	NA	intron (NM_003482, intron 43 of 54)	intron (NM_003482, intron 43 of 54)	-11459	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
26246	chr10	14606451	14606750	+	0	NA	intron (NM_001282695, intron 2 of 5)	MLT1B|LTR|ERVL-MaLR	-2199	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
19140	chr1	171546851	171547150	+	0	NA	intron (NM_015172, intron 17 of 33)	AluSp|SINE|Alu	61470	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
205118	chr7	6871951	6872050	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-45725	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
27443	chr10	31836871	31837030	+	0	NA	intron (NM_001270698, intron 6 of 16)	Tigger16a|DNA|TcMar-Tigger	71976	NM_001270699	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
146954	chr20	52379771	52380000	+	0	NA	Intergenic	Intergenic	-187900	NM_199427	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
98229	chr17	46153971	46154980	+	0	NA	intron (NM_015443, intron 2 of 14).2	AluJb|SINE|Alu	38307	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
162278	chr3	47375751	47376050	+	0	NA	Intergenic	L2a|LINE|L2	-5121	NM_001304482	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
54110	chr12	76143501	76144080	+	0	NA	Intergenic	(CCAGAAG)n|Simple_repeat|Simple_repeat	-59105	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
78126	chr15	90361921	90362880	+	0	NA	3' UTR (NM_001004309, exon 4 of 4)	3' UTR (NM_001004309, exon 4 of 4)	10116	NM_001004309	342132		NM_001004309	ENSG00000196391	ZNF774	-	zinc finger protein 774	protein-coding
129075	chr2	65098751	65098930	+	0	NA	intron (NM_004161, intron 2 of 5)	AluSz6|SINE|Alu	31266	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
117609	chr19	22635701	22635900	+	0	NA	intron (NM_020855, intron 1 of 3)	intron (NM_020855, intron 1 of 3)	1476	NM_020855	57615		NM_020855	ENSG00000229676	ZNF492	ZNF115	zinc finger protein 492	protein-coding
74780	chr15	63258671	63259050	+	0	NA	intron (NM_016530, intron 5 of 7)	MER51A|LTR|ERV1	-18690	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
92627	chr17	10113051	10113430	+	0	NA	intron (NM_201433, intron 1 of 13)	L1ME4b|LINE|L1	-76583	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
35038	chr11	575171	577050	+	0	NA	promoter-TSS (NR_026967)	promoter-TSS (NR_026967)	-225	NR_026967	143666		NR_026967		LOC143666	-	uncharacterized LOC143666	ncRNA
34943	chr11	447901	448800	+	0	NA	promoter-TSS (NM_001329548)	promoter-TSS (NM_001329548)	82	NM_001329548	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
75103	chr15	64462971	64463330	+	0	NA	intron (NM_015042, intron 1 of 9)	AluJb|SINE|Alu	2572	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
93295	chr17	18150251	18150780	+	0	NA	exon (NM_016239, exon 35 of 65)	exon (NM_016239, exon 35 of 65)	-32954	NR_164159	105371566		NR_164159		LOC105371566	-	uncharacterized LOC105371566	ncRNA
193497	chr6	30560871	30561230	+	0	NA	intron (NM_025263, intron 2 of 3).3	intron (NM_025263, intron 2 of 3).3	-3456	NM_005275	2794		NM_005275	ENSG00000204590	GNL1	HSR1	G protein nucleolar 1 (putative)	protein-coding
225871	chr9	38546251	38547150	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-1328	NR_047651	100289137		NR_047651	ENSG00000180071	FAM95C	-	family with sequence similarity 95 member C	ncRNA
118098	chr19	34405671	34405980	+	0	NA	intron (NM_001353433, intron 3 of 6)	AluSx1|SINE|Alu	1426	NM_032346	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
158018	chr22	49910671	49911200	+	0	NA	intron (NM_024105, intron 3 of 9)	intron (NM_024105, intron 3 of 9)	7503	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
150390	chr21	42294971	42295130	+	0	NA	intron (NM_207628, intron 16 of 16)	AluSz|SINE|Alu	20359	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
47936	chr12	6823651	6824480	+	0	NA	exon (NM_019858, exon 2 of 5)	exon (NM_019858, exon 2 of 5)	2244	NM_019858	27239		NM_014449	ENSG00000250510	GPR162	A-2|GRCA	G protein-coupled receptor 162	protein-coding
154958	chr22	37263621	37263880	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-18758	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
108864	chr18	79378621	79379550	+	0	NA	TTS (NR_148360)	TTS (NR_148360)	-16845	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
110310	chr19	1844471	1845030	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	3733	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
15485	chr1	150372421	150373380	+	0	NA	intron (NM_015203, intron 1 of 10)	L2a|LINE|L2	8789	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
127933	chr2	46493471	46494030	+	0	NA	Intergenic	Intergenic	14185	NM_001145051	388946		NM_001145051	ENSG00000284701	TMEM247	-	transmembrane protein 247	protein-coding
16510	chr1	154922001	154922200	+	0	NA	Intergenic	AluSx1|SINE|Alu	14619	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
231863	chr9	132901601	132902300	+	0	NA	intron (NM_000368, intron 18 of 22)	MER119|DNA|hAT-Charlie	-22904	NM_001371771	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
93260	chr17	18017171	18017530	+	0	NA	TTS (NM_001130090)	TTS (NM_001130090)	21818	NM_145691	91647		NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|LP3663|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding
92974	chr17	17116221	17116480	+	0	NA	intron (NM_015134, intron 3 of 22)	intron (NM_015134, intron 3 of 22)	73893	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
185	chr1	675851	676350	+	0	NA	Intergenic	L1PA7|LINE|L1	10554	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
66028	chr14	58275921	58276900	+	0	NA	intron (NR_029435, intron 2 of 3)	L1ME1|LINE|L1	-11623	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
69669	chr14	98042571	98042730	+	0	NA	Intergenic	Intergenic	-64526	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
140391	chr2	233073571	233073800	+	0	NA	intron (NM_001017915, intron 1 of 26).2	intron (NM_001017915, intron 1 of 26).2	13343	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
138472	chr2	206764671	206766080	+	0	NA	promoter-TSS (NM_001136193)	promoter-TSS (NM_001136193)	-13	NM_001136194	22868		NM_014929	ENSG00000118246	FASTKD2	COXPD44|KIAA0971	FAST kinase domains 2	protein-coding
154608	chr22	36299601	36300200	+	0	NA	intron (NM_002473, intron 23 of 40)	intron (NM_002473, intron 23 of 40)	-12993	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
134036	chr2	131101951	131102530	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2607	NM_001267062	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
151088	chr21	44833351	44833450	+	0	NA	Intergenic	AluY|SINE|Alu	-15271	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
32204	chr10	101775701	101777000	+	0	NA	promoter-TSS (NM_033163)	promoter-TSS (NM_033163)	-236	NM_033163	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
167132	chr3	127694321	127694630	+	0	NA	intron (NM_001003794, intron 7 of 7)	intron (NM_001003794, intron 7 of 7)	21523	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
56217	chr12	111598601	111600280	+	0	NA	promoter-TSS (NM_001372574)	promoter-TSS (NM_001372574)	-58	NR_146497	102723619		NR_146497	ENSG00000258099	ATXN2-AS	-	ATXN2 antisense RNA	ncRNA
90151	chr17	141871	142680	+	0	NA	TTS (NM_003585).2	TTS (NM_003585).2	4706	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
128882	chr2	64103171	64103530	+	0	NA	intron (NM_020651, intron 3 of 6)	MER20B|DNA|hAT-Charlie	41070	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
48360	chr12	9421171	9421330	+	0	NA	intron (NR_033399, intron 20 of 26)	intron (NR_033399, intron 20 of 26)	-13836	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA
102881	chr17	76518321	76518780	+	0	NA	Intergenic	AluSx3|SINE|Alu	-9036	NR_033357	768206		NM_001077620	ENSG00000214140	PRCD	RP36	photoreceptor disc component	protein-coding
189701	chr5	176511071	176511430	+	0	NA	Intergenic	AluY|SINE|Alu	26152	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
175020	chr4	52642071	52642430	+	0	NA	intron (NM_022832, intron 1 of 8)	MIR|SINE|MIR	14289	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
39882	chr11	62490121	62490380	+	0	NA	intron (NM_024060, intron 5 of 5)	AluSg|SINE|Alu	55414	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
6908	chr1	31621471	31621630	+	0	NA	exon (NM_001525, exon 6 of 9)	exon (NM_001525, exon 6 of 9)	3861	NM_001525	3061		NM_001525	ENSG00000121764	HCRTR1	ORXR1|OX1R|OXR1	hypocretin receptor 1	protein-coding
187868	chr5	148374851	148375030	+	0	NA	intron (NR_105057, intron 2 of 4)	intron (NR_105057, intron 2 of 4)	8910	NR_105057	102546294		NR_105057	ENSG00000247199	FBXO38-DT	-	FBXO38 divergent transcript	ncRNA
18796	chr1	167617121	167618200	+	0	NA	Intergenic	Intergenic	-12533	NM_001322923	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
141208	chr2	239375221	239375700	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	-23656	NR_039948	100616360		NR_039948	ENSG00000264292	MIR2467	mir-2467	microRNA 2467	ncRNA
48395	chr12	9643951	9644050	+	0	NA	intron (NR_046449, intron 1 of 3)	intron (NR_046449, intron 1 of 3)	1132	NR_046449	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
235481	chrX	46704921	46705250	+	0	NA	intron (NM_001257291, intron 1 of 16)	L2c|LINE|L2	54033	NM_001257291	84679		NM_032591	ENSG00000065923	SLC9A7	MRX108|NHE-7|NHE7|SLC9A6	solute carrier family 9 member A7	protein-coding
193511	chr6	30580371	30580750	+	0	NA	intron (NM_001090, intron 8 of 23).3	intron (NM_001090, intron 8 of 23).3	-3772	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
109391	chr19	661301	661800	+	0	NA	intron (NM_194460, intron 1 of 8)	intron (NM_194460, intron 1 of 8)	1664	NM_194460	55658		NM_017876	ENSG00000070423	RNF126	-	ring finger protein 126	protein-coding
145982	chr20	46359421	46359800	+	0	NA	intron (NM_173179, intron 1 of 9)	intron (NM_173179, intron 1 of 9)	4815	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
117731	chr19	29597371	29597530	+	0	NA	Intergenic	Intergenic	-8833	NM_006627	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
90858	chr17	2367401	2368130	+	0	NA	intron (NM_014853, intron 12 of 23)	intron (NM_014853, intron 12 of 23)	30264	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
62011	chr13	83975721	83975980	+	0	NA	Intergenic	MER89|LTR|ERV1	-93376	NM_001281503	114798		NM_052910	ENSG00000178235	SLITRK1	LRRC12|TTM	SLIT and NTRK like family member 1	protein-coding
121812	chr19	47926551	47927130	+	0	NA	Intergenic	L1P4|LINE|L1	-1978	NR_024220	100170225		NR_024220		SNAR-C1	-	small NF90 (ILF3) associated RNA C1	snRNA
7518	chr1	33634521	33634980	+	0	NA	intron (NM_052896, intron 31 of 69)	L3|LINE|CR1	162105	NM_001377376	7579		NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
145213	chr20	38906071	38906430	+	0	NA	intron (NM_015568, intron 7 of 10)	intron (NM_015568, intron 7 of 10)	-20167	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
123365	chr19	53891351	53892080	+	0	NA	exon (NM_002739, exon 6 of 18)	exon (NM_002739, exon 6 of 18)	9518	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
138565	chr2	207708751	207708850	+	0	NA	Intergenic	AluSg|SINE|Alu	-2740	NM_001142300	151195		NM_152523	ENSG00000163249	CCNYL1	-	cyclin Y like 1	protein-coding
80680	chr16	3033601	3034230	+	0	NA	intron (NR_047572, intron 2 of 7)	L2b|LINE|L2	1434	NR_047572	100128770		NR_047572	ENSG00000205890	LOC100128770	-	uncharacterized LOC100128770	ncRNA
193836	chr6	31525071	31525500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3677	NM_001011700	401250		NM_001011700	ENSG00000204511	MCCD1	-	mitochondrial coiled-coil domain 1	protein-coding
5571	chr1	25926721	25926980	+	0	NA	Intergenic	Intergenic	-19973	NM_203399	3925		NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding
75078	chr15	64380571	64382030	+	0	NA	intron (NR_109934, intron 1 of 3)	intron (NR_109934, intron 1 of 3)	141	NM_001029989	9768		NM_014736	ENSG00000166803	PCLAF	KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF	PCNA clamp associated factor	protein-coding
69871	chr14	99280701	99281230	+	0	NA	Intergenic	Intergenic	-8768	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
170554	chr3	186786651	186788030	+	0	NA	promoter-TSS (NR_002586)	promoter-TSS (NR_002586)	41	NR_002586	6043		NR_002586	ENSG00000200320	SNORA63	E3|E3-2|RNE3|RNU107|SNORA63A|elF-4AII	small nucleolar RNA, H/ACA box 63	snoRNA
140436	chr2	233139401	233140030	+	0	NA	intron (NM_001017915, intron 5 of 26).2	intron (NM_001017915, intron 5 of 26).2	79373	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
159386	chr3	13413601	13415090	+	0	NA	intron (NM_024923, intron 1 of 39)	intron (NM_024923, intron 1 of 39)	5977	NM_024923	23225		NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding
232389	chr9	135971871	135972600	+	0	NA	Intergenic	Intergenic	-10862	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
4251	chr1	19605821	19606300	+	0	NA	intron (NM_001204088, intron 2 of 4)	L2c|LINE|L2	-1747	NR_077246	644068		NR_077246		RPS14P3	RPS14_1_16	ribosomal protein S14 pseudogene 3	pseudo
102387	chr17	75576651	75576950	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	-11258	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
168470	chr3	143123351	143123850	+	0	NA	3' UTR (NM_004267, exon 2 of 2)	3' UTR (NM_004267, exon 2 of 2)	3829	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
63705	chr14	21135921	21136180	+	0	NA	Intergenic	Intergenic	20013	NM_001004731	390445		NM_001004731	ENSG00000169327	OR5AU1	OR14-38	olfactory receptor family 5 subfamily AU member 1	protein-coding
91883	chr17	7260121	7260400	+	0	NA	TTS (NM_015362)	TTS (NM_015362)	2218	NM_001307	1366		NM_001307	ENSG00000181885	CLDN7	CEPTRL2|CLDN-7|CPETRL2|Hs.84359|claudin-1	claudin 7	protein-coding
90410	chr17	1330321	1330580	+	0	NA	Intergenic	AluSx1|SINE|Alu	50788	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
6434	chr1	28208921	28209550	+	0	NA	intron (NR_159454, intron 6 of 9)	intron (NR_159454, intron 6 of 9)	-15299	NM_001164721	5724		NM_000952	ENSG00000169403	PTAFR	PAFR	platelet activating factor receptor	protein-coding
27819	chr10	38013321	38013580	+	0	NA	intron (NM_001278177, intron 2 of 4)	AluSc5|SINE|Alu	2775	NM_001324177	7581		NM_006954	ENSG00000189180	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
25370	chr10	6445001	6445230	+	0	NA	intron (NM_001282644, intron 15 of 17)	AluSx|SINE|Alu	94799	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
152896	chr22	22732321	22733150	+	0	NA	Intergenic	Intergenic	86423	NM_199127	91227		NM_080839	ENSG00000100121	GGTLC2	GGTL4	gamma-glutamyltransferase light chain 2	protein-coding
112816	chr19	7508921	7509200	+	0	NA	TTS (NM_198534)	TTS (NM_198534)	-7043	NM_018083	140467		NM_018083	ENSG00000198816	ZNF358	ZFEND	zinc finger protein 358	protein-coding
185472	chr5	131285801	131286650	+	0	NA	intron (NM_001038702, intron 1 of 4)	AluJb|SINE|Alu	22172	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
82802	chr16	21467751	21467850	+	0	NA	intron (NR_027155, intron 10 of 28)	intron (NR_027155, intron 10 of 28)	-33345	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
69178	chr14	92647751	92648050	+	0	NA	intron (NM_024832, intron 5 of 9)	intron (NM_024832, intron 5 of 9)	71666	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
49581	chr12	27012201	27012430	+	0	NA	intron (NM_016551, intron 1 of 11)	MIRb|SINE|MIR	2069	NM_016551	51768		NM_016551	ENSG00000064115	TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding
180538	chr5	14597101	14597550	+	0	NA	intron (NM_019018, intron 1 of 7)	MIR|SINE|MIR	15533	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
138	chr1	517401	518200	+	0	NA	Intergenic	Intergenic	-22355	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
202030	chr6	152982651	152984800	+	0	NA	promoter-TSS (NM_001142522)	promoter-TSS (NM_001142522)	-146	NM_001142522	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
112531	chr19	6519501	6519700	+	0	NA	Intergenic	Intergenic	-11426	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
66156	chr14	60347071	60347430	+	0	NA	Intergenic	Intergenic	24054	NR_146481	101927729		NR_146481	ENSG00000258556	LINC02322	-	long intergenic non-protein coding RNA 2322	ncRNA
99937	chr17	57253351	57254000	+	0	NA	Intergenic	Intergenic	-2176	NM_001322250	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
109897	chr19	1274801	1277380	+	0	NA	intron (NM_017914, intron 1 of 2)	CpG	560	NM_017914	55009		NM_017914	ENSG00000228300	FAM174C	C19orf24	family with sequence similarity 174 member C	protein-coding
213980	chr7	142804501	142805450	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	34005	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
171756	chr3	198158851	198159530	+	0	NA	intron (NR_146164, intron 3 of 17)	MER4A1_|LTR|ERV1	5984	NR_146164	728262		NM_001145248	ENSG00000290937	FAM157A	GTF2IP18	family with sequence similarity 157 member A	ncRNA
144399	chr20	35271821	35272080	+	0	NA	intron (NM_006690, intron 8 of 8)	intron (NM_006690, intron 8 of 8)	6172	NM_001355004	101410538		NM_001355003	ENSG00000126005	MMP24OS	MMP24-AS1	MMP24 opposite strand	protein-coding
43099	chr11	74929721	74930150	+	0	NA	intron (NM_001378161, intron 5 of 16)	intron (NM_001378161, intron 5 of 16)	19156	NM_001378157	143570		NM_182969	ENSG00000166435	XRRA1	-	X-ray radiation resistance associated 1	protein-coding
99455	chr17	50141701	50142180	+	0	NA	intron (NM_032595, intron 3 of 9)	intron (NM_032595, intron 3 of 9)	8737	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
77647	chr15	85496321	85496780	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	115947	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
109436	chr19	727801	728000	+	0	NA	intron (NM_002579, intron 4 of 8)	intron (NM_002579, intron 4 of 8)	18965	NM_002579	5064		NM_002579	ENSG00000099864	PALM	PALM1	paralemmin	protein-coding
130215	chr2	84686821	84687080	+	0	NA	intron (NM_001370, intron 44 of 76)	intron (NM_001370, intron 44 of 76)	170452	NM_001370	1768		NM_001370	ENSG00000115423	DNAH6	DNHL1|Dnahc6|HL-2|HL2	dynein axonemal heavy chain 6	protein-coding
105642	chr18	909371	909530	+	0	NA	exon (NM_001099733, exon 5 of 5)	exon (NM_001099733, exon 5 of 5)	4084	NM_001117	116		NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
178848	chr4	153789451	153789550	+	0	NA	promoter-TSS (NM_003013)	promoter-TSS (NM_003013)	-417	NM_003013	6423		NM_003013	ENSG00000145423	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled related protein 2	protein-coding
11947	chr1	93850301	93850960	+	0	NA	Intergenic	LTR13|LTR|ERVK	-3411	NM_001261408	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
89284	chr16	88691521	88692380	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-5443	NM_178310	333929		NM_178310	ENSG00000185669	SNAI3	SMUC|SNAIL3|ZNF293|Zfp293	snail family transcriptional repressor 3	protein-coding
17894	chr1	160094721	160095250	+	0	NA	exon (NM_001206665, exon 3 of 8)	exon (NM_001206665, exon 3 of 8)	3634	NM_052868	93185		NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
152437	chr22	20589071	20590230	+	0	NA	Intergenic	Intergenic	81603	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
219268	chr8	67342751	67344500	+	0	NA	promoter-TSS (NR_136223)	promoter-TSS (NR_136223)	156	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
95729	chr17	38577601	38578000	+	0	NA	intron (NM_025248, intron 2 of 18)	intron (NM_025248, intron 2 of 18)	28152	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
91721	chr17	6643471	6644030	+	0	NA	3' UTR (NM_016060, exon 4 of 4)	3' UTR (NM_016060, exon 4 of 4)	2690	NM_032731	84817		NM_032731	ENSG00000129235	TXNDC17	TRP14|TXNL5	thioredoxin domain containing 17	protein-coding
225377	chr9	34992551	34993050	+	0	NA	intron (NM_001349725, intron 2 of 4)	intron (NM_001349725, intron 2 of 4)	2510	NM_001135005	25822		NM_012266	ENSG00000137094	DNAJB5	Hsc40	DnaJ heat shock protein family (Hsp40) member B5	protein-coding
123607	chr19	54506751	54507650	+	0	NA	intron (NM_021270, intron 2 of 3).2	intron (NM_021270, intron 2 of 3).2	4369	NM_021270	3904		NM_002288	ENSG00000167618	LAIR2	CD306	leukocyte associated immunoglobulin like receptor 2	protein-coding
214303	chr7	149152301	149152580	+	0	NA	intron (NM_170686, intron 1 of 5)	AluY|SINE|Alu	4987	NM_170686	57541		NM_020781	ENSG00000197024	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding
237636	chrX	124097801	124098330	+	0	NA	intron (NM_001042751, intron 33 of 33)	intron (NM_001042751, intron 33 of 33)	136359	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
185565	chr5	131377301	131377500	+	0	NA	intron (NM_001038702, intron 2 of 4)	AluSz6|SINE|Alu	113347	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
155839	chr22	39435751	39436050	+	0	NA	non-coding (NR_040535, exon 3 of 3)	non-coding (NR_040535, exon 3 of 3)	3740	NR_040535	100506472		NR_040535		LOC100506472	-	uncharacterized LOC100506472	ncRNA
24193	chr1	235998621	236000250	+	0	NA	intron (NM_002508, intron 12 of 19)	intron (NM_002508, intron 12 of 19)	65655	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
191477	chr6	11172101	11173100	+	0	NA	Intergenic	Intergenic	60068	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
137130	chr2	191026271	191027030	+	0	NA	intron (NR_136318, intron 1 of 2)	MSTB1-int|LTR|ERVL-MaLR	5124	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
62640	chr13	101514821	101515530	+	0	NA	intron (NM_001271756, intron 1 of 9)	intron (NM_001271756, intron 1 of 9)	25223	NM_001271756	9358		NM_004791	ENSG00000198542	ITGBL1	OSCP|TIED	integrin subunit beta like 1	protein-coding
123957	chr19	55399451	55399900	+	0	NA	TTS (NM_014501)	TTS (NM_014501)	2982	NR_145781	109623451		NR_145781		SNORD157	-	small nucleolar RNA, C/D box 157	snoRNA
140897	chr2	237677251	237677630	+	0	NA	intron (NM_001137550, intron 1 of 23)	L1MB3|LINE|L1	-14724	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
134584	chr2	144260971	144261600	+	0	NA	intron (NR_164806, intron 1 of 11)	intron (NR_164806, intron 1 of 11)	-12586	NR_148872	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
110163	chr19	1647721	1648180	+	0	NA	intron (NM_003200, intron 2 of 18)	intron (NM_003200, intron 2 of 18)	4665	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
167964	chr3	136675871	136676230	+	0	NA	intron (NM_005862, intron 1 of 33)	Tigger3b|DNA|TcMar-Tigger	76328	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
107183	chr18	35583401	35584030	+	0	NA	intron (NM_001384444, intron 1 of 11)	intron (NM_001384444, intron 1 of 11)	1975	NM_001384445	2589		NM_020474	ENSG00000141429	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
165177	chr3	72427471	72428150	+	0	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	18813	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
147318	chr20	57716571	57716930	+	0	NA	Intergenic	Intergenic	-5214	NM_199171	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
183453	chr5	79230451	79230550	+	0	NA	Intergenic	Intergenic	-5631	NM_152405	133746		NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding
10032	chr1	56975351	56975650	+	0	NA	Intergenic	Intergenic	-9360	NM_001278544	732		NM_000066	ENSG00000021852	C8B	C82	complement C8 beta chain	protein-coding
81649	chr16	10947301	10947730	+	0	NA	intron (NM_001243403, intron 1 of 20)	L2c|LINE|L2	2951	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
132219	chr2	102250021	102250280	+	0	NA	Intergenic	Intergenic	-61352	NM_001282408	9173		NM_003856	ENSG00000115602	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor like 1	protein-coding
85641	chr16	55752821	55753680	+	0	NA	Intergenic	Intergenic	-7349	NR_003276	51716		NM_016280	ENSG00000291109	CES1P1	CES1A2|CES1A3|CES4|CESR|PCE-3	carboxylesterase 1 pseudogene 1	pseudo
202217	chr6	156800721	156801350	+	0	NA	intron (NM_001371656, intron 2 of 20)	MER3|DNA|hAT-Charlie	-21304	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
101061	chr17	64833051	64834000	+	0	NA	intron (NR_024386, intron 1 of 10)	(TGACAGG)n|Simple_repeat|Simple_repeat	3659	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
54451	chr12	91874051	91874350	+	0	NA	Intergenic	Intergenic	267513	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
219296	chr8	69832751	69833300	+	0	NA	5' UTR (NM_001146009, exon 1 of 8)	5' UTR (NM_001146009, exon 1 of 8)	144	NM_001146009	81796		NM_030958	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15	solute carrier organic anion transporter family member 5A1	protein-coding
211560	chr7	105581101	105581630	+	0	NA	exon (NM_001355529, exon 1 of 3)	exon (NM_001355529, exon 1 of 3)	128	NM_001355530	100130771		NM_001355526	ENSG00000185055	EFCAB10	-	EF-hand calcium binding domain 10	protein-coding
225520	chr9	35729701	35730350	+	0	NA	intron (NM_006289, intron 1 of 56)	intron (NM_006289, intron 1 of 56)	2170	NM_006289	7094		NM_006289	ENSG00000137076	TLN1	ILWEQ|TLN|talin-1	talin 1	protein-coding
145495	chr20	43948771	43948930	+	0	NA	intron (NM_001098798, intron 1 of 7)	MIRc|SINE|MIR	2954	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
9180	chr1	45596721	45597430	+	0	NA	intron (NM_001195193, intron 2 of 12)	AluSz|SINE|Alu	13034	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
144093	chr20	33779051	33779150	+	0	NA	intron (NR_104259, intron 10 of 13)	MSTA|LTR|ERVL-MaLR	31999	NR_110623	101929746		NR_110623	ENSG00000230753	ZNF341-AS1	-	ZNF341 antisense RNA 1	ncRNA
64122	chr14	22838351	22838650	+	0	NA	intron (NM_004995, intron 1 of 9)	intron (NM_004995, intron 1 of 9)	1915	NM_004995	4323		NM_004995	ENSG00000157227	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14	protein-coding
155765	chr22	39230521	39231230	+	0	NA	intron (NM_033016, intron 4 of 6)	intron (NM_033016, intron 4 of 6)	10034	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
218619	chr8	56073001	56075400	+	0	NA	promoter-TSS (NR_002437)	promoter-TSS (NR_002437)	-299	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
29748	chr10	72198111	72198630	+	0	NA	intron (NM_001369102, intron 5 of 11)	G-rich|Low_complexity|Low_complexity	17586	NM_001369106	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
204513	chr7	4791251	4791350	+	0	NA	exon (NM_001364858, exon 16 of 16)	exon (NM_001364858, exon 16 of 16)	-2661	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
237114	chrX	104909751	104910300	+	0	NA	intron (NM_017416, intron 2 of 10)	L1PA2|LINE|L1	310669	NM_001291277	56157		NM_031274	ENSG00000268629	TEX13A	-	testis expressed 13A	protein-coding
48025	chr12	6944501	6945250	+	0	NA	TTS (NR_023317)	TTS (NR_023317)	853	NM_138425	113246		NM_138425	ENSG00000111678	C12orf57	C10|GRCC10	chromosome 12 open reading frame 57	protein-coding
234928	chrX	37825071	37825580	+	0	NA	Intergenic	Intergenic	22246	NM_006520	6990		NM_006520	ENSG00000165169	DYNLT3	RP3|TCTE1L|TCTEX1L	dynein light chain Tctex-type 3	protein-coding
220440	chr8	100309601	100310900	+	0	NA	promoter-TSS (NM_001353838)	promoter-TSS (NM_001353838)	-297	NM_183419	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
211689	chr7	106664151	106664580	+	0	NA	Intergenic	MIR3|SINE|MIR	-3207	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
23482	chr1	228629971	228631100	+	0	NA	promoter-TSS (NR_023363).9	promoter-TSS (NR_023363).9	-27	NR_023366	100169755		NR_023366	ENSG00000200381	RNA5S4	RN5S4	RNA, 5S ribosomal 4	rRNA
12169	chr1	100354921	100355400	+	0	NA	intron (NM_001319210, intron 2 of 16)	intron (NM_001319210, intron 2 of 16)	2654	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
99306	chr17	49812401	49813200	+	0	NA	intron (NM_001199155, intron 6 of 13)	AluSg7|SINE|Alu	24119	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
214009	chr7	143246271	143246430	+	0	NA	intron (NM_001363538, intron 8 of 11)	L1ME1|LINE|L1	-17079	NM_001143680	373156		NM_015917	ENSG00000197448	GSTK1	GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1	glutathione S-transferase kappa 1	protein-coding
67919	chr14	74620601	74621300	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-8713	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
150738	chr21	43756951	43757650	+	0	NA	3' UTR (NM_003681, exon 11 of 11)	3' UTR (NM_003681, exon 11 of 11)	15814	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
185104	chr5	119267821	119269730	+	0	NA	promoter-TSS (NM_001286817)	promoter-TSS (NM_001286817)	16	NM_001286817	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
5821	chr1	26682551	26683080	+	0	NA	Intergenic	Intergenic	11316	NR_135804	101928728		NR_135804	ENSG00000260063	LOC101928728	-	uncharacterized LOC101928728	ncRNA
28350	chr10	46911121	46911430	+	0	NA	promoter-TSS (NM_001352544)	promoter-TSS (NM_001352544)	-121	NM_001352536	26095		NM_015605	ENSG00000204179	PTPN20	CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1	protein tyrosine phosphatase non-receptor type 20	protein-coding
232083	chr9	133563801	133564700	+	0	NA	intron (NM_014694, intron 12 of 18)	intron (NM_014694, intron 12 of 18)	21869	NM_001371529	642968		NM_001080515	ENSG00000196990	FAM163B	C9orf166	family with sequence similarity 163 member B	protein-coding
211717	chr7	106878601	106879000	+	0	NA	intron (NM_001282426, intron 5 of 10)	intron (NM_001282426, intron 5 of 10)	13321	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
114652	chr19	13034021	13034400	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	9431	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
14932	chr1	147581471	147581630	+	0	NA	intron (NM_004326, intron 1 of 9)	intron (NM_004326, intron 1 of 9)	40049	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
224778	chr9	22038021	22038380	+	0	NA	intron (NR_047539, intron 3 of 12)	intron (NR_047539, intron 3 of 12)	-28887	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
230385	chr9	128092351	128092450	+	0	NA	intron (NM_001265614, intron 1 of 10)	intron (NM_001265614, intron 1 of 10)	936	NM_001265614	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
128750	chr2	62190851	62191350	+	0	NA	Intergenic	L2b|LINE|L2	-5015	NM_006577	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
31314	chr10	92690401	92691000	+	0	NA	intron (NM_002729, intron 1 of 3)	CpG-3143	745	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
218787	chr8	59008371	59008530	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	110697	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
66398	chr14	61500121	61500730	+	0	NA	intron (NM_006255, intron 10 of 13)	AluJo|SINE|Alu	69769	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
29971	chr10	73647321	73648200	+	0	NA	exon (NM_024875, exon 2 of 2)	exon (NM_024875, exon 2 of 2)	3280	NM_024875	79933		NM_024875	ENSG00000166317	SYNPO2L	-	synaptopodin 2 like	protein-coding
104885	chr17	81876651	81877780	+	0	NA	Intergenic	Intergenic	-5878	NM_001301240	396		NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
15296	chr1	149842821	149843790	+	0	NA	promoter-TSS (NM_003516)	promoter-TSS (NM_003516)	-554	NM_001040874	723790		NM_001040874	ENSG00000288859	H2AC19	H2A/R|H2AC18|HIST2H2AA4	H2A clustered histone 19	protein-coding
47109	chr12	670701	671300	+	0	NA	Intergenic	AluSq2|SINE|Alu	-7555	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
78058	chr15	90099901	90100830	+	0	NA	intron (NM_002168, intron 1 of 10)	intron (NM_002168, intron 1 of 10)	256	NM_001289910	3418		NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDH-2|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2	protein-coding
114902	chr19	13928871	13929430	+	0	NA	intron (NM_017721, intron 24 of 28)	AluSx4|SINE|Alu	9267	NM_001370095	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
102014	chr17	74789551	74789650	+	0	NA	intron (NM_017728, intron 4 of 9)	AluSq2|SINE|Alu	13101	NM_017728	54868		NM_017728	ENSG00000109066	TMEM104	SLC38A12	transmembrane protein 104	protein-coding
152868	chr22	22422701	22422970	+	0	NA	Intergenic	Intergenic	85907	NR_130643	140883		NM_080764	ENSG00000275004	ZNF280B	5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632	zinc finger protein 280B	protein-coding
65462	chr14	51776121	51776650	+	0	NA	Intergenic	Intergenic	59102	NM_001267047	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
29302	chr10	69321821	69322480	+	0	NA	intron (NM_000188, intron 1 of 17)	intron (NM_000188, intron 1 of 17)	3303	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
43127	chr11	75259801	75260280	+	0	NA	TTS (NM_004041)	TTS (NM_004041)	19266	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
42743	chr11	72709601	72709800	+	0	NA	intron (NR_161388, intron 8 of 29)	intron (NR_161388, intron 8 of 29)	9226	NR_146780	100506020		NR_146780	ENSG00000245148	ARAP1-AS2	-	ARAP1 antisense RNA 2	ncRNA
93486	chr17	18954201	18954600	+	0	NA	intron (NM_152351, intron 1 of 14)	intron (NM_152351, intron 1 of 14)	2235	NM_001270648	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
68580	chr14	89433621	89434280	+	0	NA	intron (NM_001085471, intron 1 of 6)	AluSq2|SINE|Alu	16596	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
227560	chr9	92135351	92135930	+	0	NA	intron (NR_015444, intron 4 of 12)	intron (NR_015444, intron 4 of 12)	2806	NR_015444	100128076		NR_015444		LOC100128076	-	protein tyrosine phosphatase receptor type H pseudogene	pseudo
40839	chr11	65024221	65024680	+	0	NA	intron (NR_037650, intron 3 of 10)	LTR5B|LTR|ERVK	-2989	NM_013306	29907		NM_013306	ENSG00000110025	SNX15	HSAF001435	sorting nexin 15	protein-coding
179894	chr5	671351	672100	+	0	NA	intron (NM_007030, intron 2 of 3)	intron (NM_007030, intron 2 of 3)	21627	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
120081	chr19	42091851	42091950	+	0	NA	TTS (NM_001207026)	TTS (NM_001207026)	15734	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
157725	chr22	46562521	46562780	+	0	NA	Intergenic	Intergenic	-14438	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
87603	chr16	74309651	74310330	+	0	NA	Intergenic	Intergenic	13176	NM_002811	5713		NM_002811	ENSG00000103035	PSMD7	MOV34|P40|Rpn8|S12	proteasome 26S subunit, non-ATPase 7	protein-coding
144377	chr20	35140951	35141050	+	0	NA	intron (NM_001145025, intron 3 of 9)	AluSx1|SINE|Alu	6336	NM_001145025	55741		NM_018217	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	ER degradation enhancing alpha-mannosidase like protein 2	protein-coding
26074	chr10	13102101	13102780	+	0	NA	intron (NM_021980, intron 1 of 13)	intron (NM_021980, intron 1 of 13)	2277	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
162713	chr3	49004821	49005300	+	0	NA	exon (NM_177938, exon 6 of 9)	exon (NM_177938, exon 6 of 9)	-2331	NM_018031	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
225399	chr9	35046651	35047150	+	0	NA	TTS (NM_001040412)	TTS (NM_001040412)	4660	NM_001287391	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
11538	chr1	91006951	91007480	+	0	NA	intron (NM_032186, intron 1 of 3)	HAL1|LINE|L1	14293	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
165924	chr3	107428271	107428830	+	0	NA	Intergenic	Intergenic	-2380	NR_110039	101929607		NR_110039	ENSG00000273125	LINC01990	-	long intergenic non-protein coding RNA 1990	ncRNA
184721	chr5	109408801	109411040	+	0	NA	promoter-TSS (NM_014819)	promoter-TSS (NM_014819)	54	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
229487	chr9	122161271	122161700	+	0	NA	intron (NM_001286828, intron 1 of 3)	intron (NM_001286828, intron 1 of 3)	1577	NM_001286828	254956		NM_198469	ENSG00000185681	MORN5	C9orf113|C9orf18	MORN repeat containing 5	protein-coding
227689	chr9	93009721	93010180	+	0	NA	non-coding (NR_121565, exon 3 of 3)	non-coding (NR_121565, exon 3 of 3)	4994	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
103863	chr17	79741471	79742630	+	0	NA	3' UTR (NM_178543, exon 6 of 6)	3' UTR (NM_178543, exon 6 of 6)	11107	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
119450	chr19	40410021	40410280	+	0	NA	intron (NM_020956, intron 1 of 5)	MIR|SINE|MIR	3214	NM_020956	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
11769	chr1	92460871	92461030	+	0	NA	Intergenic	Intergenic	23004	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
187847	chr5	147484271	147484430	+	0	NA	intron (NM_001197294, intron 1 of 13)	UCON78|DNA|DNA	25718	NM_001197294	1809		NM_001387	ENSG00000113657	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase like 3	protein-coding
15761	chr1	151160671	151161130	+	0	NA	exon (NM_001136543, exon 3 of 3)	exon (NM_001136543, exon 3 of 3)	4251	NM_024575	79626		NM_024575	ENSG00000163154	TNFAIP8L2	TIPE2	TNF alpha induced protein 8 like 2	protein-coding
48870	chr12	12456621	12457700	+	0	NA	intron (NM_058169, intron 3 of 3)	MIRb|SINE|MIR	100082	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
27484	chr10	32055351	32057130	+	0	NA	5' UTR (NM_004521, exon 1 of 26)	5' UTR (NM_004521, exon 1 of 26)	185	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
172384	chr4	1763321	1764130	+	0	NA	Intergenic	CpG	-29568	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
140879	chr2	237597101	237597300	+	0	NA	Intergenic	Intergenic	-6466	NM_022449	64284		NM_022449	ENSG00000124839	RAB17	-	RAB17, member RAS oncogene family	protein-coding
71067	chr14	104827301	104828150	+	0	NA	Intergenic	Intergenic	6524	NR_024396	196872		NM_152646	ENSG00000258701	VESTAR	LINC00638	VEGFC mRNA stability associated lncRNA	ncRNA
136482	chr2	177221421	177221950	+	0	NA	non-coding (NR_138470, exon 11 of 12)	non-coding (NR_138470, exon 11 of 12)	8891	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
161661	chr3	43330821	43331280	+	0	NA	intron (NM_017719, intron 3 of 6)	intron (NM_017719, intron 3 of 6)	20912	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
61263	chr13	50074751	50075130	+	0	NA	intron (NR_152566, intron 2 of 13)	intron (NR_152566, intron 2 of 13)	7101	NR_152568	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
191499	chr6	11231971	11233600	+	0	NA	promoter-TSS (NM_001271033)	promoter-TSS (NM_001271033)	-103	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
100557	chr17	62633751	62634250	+	0	NA	intron (NM_006039, intron 1 of 29)	MER41B|LTR|ERV1	6330	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
230559	chr9	128453421	128453680	+	0	NA	intron (NR_031672, intron 2 of 2).4	intron (NR_031672, intron 2 of 2).4	-1605	NM_153436	4957		NM_002540	ENSG00000136811	ODF2	CT134|ODF2/1|ODF2/2|ODF84	outer dense fiber of sperm tails 2	protein-coding
34984	chr11	512651	512750	+	0	NA	Intergenic	L1ME3A|LINE|L1	-5458	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
222336	chr8	133528951	133529750	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	42537	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
161805	chr3	45389421	45389900	+	0	NA	intron (NM_001368263, intron 1 of 20)	intron (NM_001368263, intron 1 of 20)	1084	NM_015340	23395		NM_015340	ENSG00000011376	LARS2	HLASA|LEURS|PRLTS4|mtLeuRS	leucyl-tRNA synthetase 2, mitochondrial	protein-coding
182892	chr5	70053021	70054100	+	0	NA	intron (NM_022874, intron 1 of 7)	L2|LINE|L2	3891	NM_000344	6606		NM_000344	ENSG00000172062	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
155476	chr22	38494321	38495730	+	0	NA	exon (NM_001098504, exon 7 of 13)	exon (NM_001098504, exon 7 of 13)	11286	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
162614	chr3	48705521	48705780	+	0	NA	intron (NM_016291, intron 1 of 5)	AluJr|SINE|Alu	11571	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
55584	chr12	106357501	106358730	+	0	NA	promoter-TSS (NM_001160708)	promoter-TSS (NM_001160708)	33	NM_001160708	55703		NM_018082	ENSG00000013503	POLR3B	C128|CMT1I|HLD8|INMAP|RPC2	RNA polymerase III subunit B	protein-coding
120200	chr19	42287871	42288180	+	0	NA	intron (NM_001379484, intron 6 of 19)	intron (NM_001379484, intron 6 of 19)	3556	NM_015125	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
212056	chr7	114975071	114975530	+	0	NA	intron (NM_199072, intron 3 of 4)	intron (NM_199072, intron 3 of 4)	53146	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
227717	chr9	93040671	93040830	+	0	NA	Intergenic	Intergenic	-17938	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
190107	chr5	177924051	177924150	+	0	NA	Intergenic	Intergenic	-15427	NR_149047	100128340		NR_149047		LOC100128340	-	uncharacterized LOC100128340	ncRNA
174198	chr4	36773321	36773660	+	0	NA	Intergenic	Intergenic	-131590	NR_149124	105374400		NR_149124		LINC02505	-	long intergenic non-protein coding RNA 2505	ncRNA
126872	chr2	32040851	32041500	+	0	NA	Intergenic	AluSc|SINE|Alu	-1340	NR_135587	84661		NM_032574	ENSG00000162961	DPY30	Cps25|HDPY-30|Saf19	dpy-30 histone methyltransferase complex regulatory subunit	protein-coding
21670	chr1	206700721	206701700	+	0	NA	intron (NM_032960, intron 1 of 9)	MER3|DNA|hAT-Charlie	16305	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
164260	chr3	57555601	57558000	+	0	NA	exon (NM_001322176, exon 1 of 3)	exon (NM_001322176, exon 1 of 3)	526	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
189382	chr5	172716651	172717350	+	0	NA	Intergenic	Intergenic	-38503	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
16845	chr1	155686651	155687000	+	0	NA	intron (NM_139121, intron 1 of 10)	intron (NM_139121, intron 1 of 10)	1831	NM_001198903	55249		NM_018253	ENSG00000163374	YY1AP1	GRNG|HCCA1|HCCA2|YY1AP	YY1 associated protein 1	protein-coding
38755	chr11	47154301	47154600	+	0	NA	intron (NM_001003676, intron 4 of 7)	intron (NM_001003676, intron 4 of 7)	22429	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
41143	chr11	65589751	65590630	+	0	NA	exon (NM_001351087, exon 14 of 18)	exon (NM_001351087, exon 14 of 18)	5610	NM_033347	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
172230	chr4	1333351	1333450	+	0	NA	intron (NR_123716, intron 4 of 6)	intron (NR_123716, intron 4 of 6)	-13808	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
159628	chr3	15291921	15293230	+	0	NA	intron (NM_004844, intron 3 of 8)	AluSp|SINE|Alu	38391	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
90657	chr17	1680001	1680200	+	0	NA	intron (NM_006445, intron 8 of 42)	intron (NM_006445, intron 8 of 42)	4767	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
99548	chr17	50376721	50377180	+	0	NA	intron (NM_152463, intron 3 of 8)	AluJo|SINE|Alu	3721	NM_152463	146956		NM_152463	ENSG00000154920	EME1	MMS4L|SLX2A	essential meiotic structure-specific endonuclease 1	protein-coding
109879	chr19	1251401	1251700	+	0	NA	intron (NM_177401, intron 2 of 7)	intron (NM_177401, intron 2 of 7)	2997	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
30084	chr10	73906701	73906900	+	0	NA	Intergenic	Intergenic	-4332	NM_001145031	5328		NM_002658	ENSG00000122861	PLAU	ATF|BDPLT5|QPD|UPA|URK|u-PA	plasminogen activator, urokinase	protein-coding
149557	chr21	33203821	33204150	+	0	NA	Intergenic	Intergenic	-25910	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
3224	chr1	13774871	13775380	+	0	NA	intron (NM_015866, intron 7 of 8)	intron (NM_015866, intron 7 of 8)	25710	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
178361	chr4	146179821	146180080	+	0	NA	intron (NM_007080, intron 1 of 3)	intron (NM_007080, intron 1 of 3)	4232	NM_007080	11157		NM_007080	ENSG00000164167	LSM6	YDR378C	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
145778	chr20	45367751	45368900	+	0	NA	3' UTR (NM_001197129, exon 5 of 5)	3' UTR (NM_001197129, exon 5 of 5)	5156	NR_003189	767557		NR_003189	ENSG00000254806	SYS1-DBNDD2	C20orf169-DBNDD2	SYS1-DBNDD2 readthrough (NMD candidate)	ncRNA
35775	chr11	2164051	2164530	+	0	NA	exon (NM_199293, exon 14 of 14)	exon (NM_199293, exon 14 of 14)	-3081	NM_001291897	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
25529	chr10	7364651	7364950	+	0	NA	intron (NM_001029880, intron 4 of 20)	intron (NM_001029880, intron 4 of 20)	44541	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
21521	chr1	205806351	205806830	+	0	NA	intron (NM_173854, intron 2 of 10)	intron (NM_173854, intron 2 of 10)	6608	NM_173854	254428		NM_173854	ENSG00000133065	SLC41A1	MgtE|NPHPL2	solute carrier family 41 member 1	protein-coding
8768	chr1	42756871	42757250	+	0	NA	intron (NM_001146289, intron 5 of 14)	L1M6B|LINE|L1	9968	NM_022356	64175		NM_022356	ENSG00000117385	P3H1	GROS1|LEPRE1|OI8	prolyl 3-hydroxylase 1	protein-coding
96118	chr17	39643251	39643700	+	0	NA	intron (NM_001165938, intron 1 of 13)	intron (NM_001165938, intron 1 of 13)	6331	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
114427	chr19	12678101	12678300	+	0	NA	intron (NR_161467, intron 5 of 7)	AluSp|SINE|Alu	3011	NM_001206974	1725		NM_001930	ENSG00000095059	DHPS	DHS|DS|MIG13|NEDSSWI	deoxyhypusine synthase	protein-coding
208985	chr7	74213501	74213700	+	0	NA	intron (NM_014146, intron 1 of 12)	AluSg|SINE|Alu	3594	NM_014146	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
202854	chr6	159783151	159783680	+	0	NA	intron (NM_030752, intron 7 of 11)	FRAM|SINE|Alu	2318	NR_002965	677812		NR_002965	ENSG00000206910	SNORA29	ACA29	small nucleolar RNA, H/ACA box 29	snoRNA
174166	chr4	36278621	36279130	+	0	NA	Intergenic	Intergenic	-2741	NM_001136536	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
218802	chr8	59043851	59044450	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	74997	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
63133	chr13	113450821	113451080	+	0	NA	intron (NM_138430, intron 1 of 6)	LTR13|LTR|ERVK	-1792	NM_199162	113622		NM_138430	ENSG00000153531	ADPRHL1	ARH2	ADP-ribosylhydrolase like 1	protein-coding
58098	chr12	124736171	124737080	+	0	NA	Intergenic	(CCAC)n|Simple_repeat|Simple_repeat	103046	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
177119	chr4	108099371	108099730	+	0	NA	intron (NM_016269, intron 3 of 11)	(TGTATG)n|Simple_repeat|Simple_repeat	67247	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
162136	chr3	46950951	46951250	+	0	NA	intron (NM_144716, intron 2 of 7)	AluJb|SINE|Alu	25401	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
35614	chr11	1770451	1770750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6673	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
96811	chr17	41927371	41927730	+	0	NA	Intergenic	AluSx|SINE|Alu	-3067	NR_146621	83538		NM_031421	ENSG00000204815	ODAD4	TTC25	outer dynein arm docking complex subunit 4	protein-coding
59387	chr13	24925571	24925730	+	0	NA	Intergenic	Intergenic	-2789	NR_047595	55835		NM_018451	ENSG00000151849	CENPJ	BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4	centromere protein J	protein-coding
12877	chr1	110209351	110210800	+	0	NA	promoter-TSS (NR_046546)	promoter-TSS (NR_046546)	-88	NR_046546	100873974		NR_046546		KCNC4-DT	KCNC4-AS1|LINC02586	KCNC4 divergent transcript	ncRNA
204132	chr7	2351351	2351850	+	0	NA	Intergenic	AluY|SINE|Alu	-2486	NM_001362792	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
135454	chr2	161242771	161243500	+	0	NA	intron (NR_110593, intron 3 of 3)	intron (NR_110593, intron 3 of 3)	-1604	NR_110164	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
193446	chr6	30488871	30489700	+	0	NA	promoter-TSS (NM_005516)	promoter-TSS (NM_005516)	-224	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
201915	chr6	151385001	151385580	+	0	NA	intron (NM_020861, intron 1 of 2)	Tigger19b|DNA|TcMar-Tigger	6269	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
152341	chr22	20426901	20428180	+	0	NA	exon (NM_153334, exon 10 of 11)	exon (NM_153334, exon 10 of 11)	10285	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
171552	chr3	196867551	196868700	+	0	NA	intron (NM_001308045, intron 1 of 8)	CpG	205	NM_152699	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
13923	chr1	120121671	120121830	+	0	NA	Intergenic	L2b|LINE|L2	-52047	NM_001200001	4853		NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch receptor 2	protein-coding
78235	chr15	90663101	90664000	+	0	NA	intron (NR_120371, intron 2 of 2)	intron (NR_120371, intron 2 of 2)	3316	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
45850	chr11	119387721	119387980	+	0	NA	intron (NR_034160, intron 1 of 3)	intron (NR_034160, intron 1 of 3)	6072	NR_034160	100499227		NR_034160		USP2-AS1	THY1-AS1|gLINC	USP2 antisense RNA 1	ncRNA
85349	chr16	50203451	50204300	+	0	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	50569	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
81341	chr16	4772801	4773450	+	0	NA	Intergenic	AluY|SINE|Alu	-5963	NM_001303450	26048		NM_021646	ENSG00000103199	ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding
92121	chr17	7592401	7593180	+	0	NA	exon (NM_004860, exon 14 of 17)	exon (NM_004860, exon 14 of 17)	-2696	NM_006942	6665		NM_006942	ENSG00000129194	SOX15	SOX20|SOX26|SOX27	SRY-box transcription factor 15	protein-coding
224495	chr9	17135001	17135400	+	0	NA	exon (NM_001286984, exon 1 of 3)	exon (NM_001286984, exon 1 of 3)	160	NM_017738	54875		NM_017738	ENSG00000044459	CNTLN	C9orf101|C9orf39|bA340N12.1	centlein	protein-coding
138828	chr2	216371871	216372630	+	0	NA	5' UTR (NM_020814, exon 1 of 4)	5' UTR (NM_020814, exon 1 of 4)	233	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
165199	chr3	72745251	72745580	+	0	NA	Intergenic	Intergenic	-81166	NR_135531	105377162		NR_135531		LOC105377162	-	uncharacterized LOC105377162	ncRNA
144520	chr20	35703901	35704300	+	0	NA	non-coding (NR_040724, exon 18 of 18)	non-coding (NR_040724, exon 18 of 18)	4695	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
84376	chr16	30270321	30270800	+	0	NA	Intergenic	Intergenic	-22147	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
13892	chr1	119327321	119327900	+	0	NA	promoter-TSS (NR_146623)	promoter-TSS (NR_146623)	-642	NR_146623	105378934		NR_146623	ENSG00000232650	LINC01780	-	long intergenic non-protein coding RNA 1780	ncRNA
225093	chr9	33413171	33413630	+	0	NA	Intergenic	AluY|SINE|Alu	-10718	NM_001318156	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
197005	chr6	53313451	53313550	+	0	NA	intron (NM_001242830, intron 1 of 6)	AluJr|SINE|Alu	24117	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
172017	chr4	972601	975080	+	0	NA	promoter-TSS (NM_001347)	promoter-TSS (NM_001347)	-271	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
188040	chr5	149730801	149731200	+	0	NA	intron (NM_133263, intron 1 of 11)	CpG	690	NM_133263	133522		NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
53407	chr12	64731871	64732030	+	0	NA	intron (NM_002076, intron 9 of 13)	intron (NM_002076, intron 9 of 13)	27456	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
74491	chr15	60005171	60005550	+	0	NA	exon (NM_012182, exon 2 of 2)	exon (NM_012182, exon 2 of 2)	1049	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
74805	chr15	63444471	63444830	+	0	NA	Intergenic	Intergenic	54420	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
92828	chr17	16200401	16200800	+	0	NA	intron (NM_006311, intron 1 of 45)	intron (NM_006311, intron 1 of 45)	-5961	NM_001190438	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
187525	chr5	142537901	142538150	+	0	NA	Intergenic	L1MC4|LINE|L1	83309	NM_001257212	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
165042	chr3	71432401	71433400	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	109189	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
57429	chr12	121886821	121887130	+	0	NA	intron (NM_001171993, intron 1 of 15)	AluSz|SINE|Alu	1636	NM_001171993	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
87069	chr16	68369451	68370180	+	0	NA	intron (NM_018667, intron 3 of 8)	intron (NM_018667, intron 3 of 8)	58701	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
154521	chr22	36065551	36066580	+	0	NA	Intergenic	CpG	-37241	NM_001082579	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
142875	chr20	17683901	17684330	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-1873	NM_001042576	6238		NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES|p180	ribosome binding protein 1	protein-coding
133103	chr2	112633471	112633700	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	10595	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
49996	chr12	42235451	42235930	+	0	NA	3' UTR (NM_001190980, exon 3 of 3)	3' UTR (NM_001190980, exon 3 of 3)	2558	NM_005748	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
232555	chr9	136353571	136354200	+	0	NA	promoter-TSS (NM_001200003)	promoter-TSS (NM_001200003)	828	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
142340	chr20	3740471	3741030	+	0	NA	intron (NM_001318322, intron 2 of 11)	intron (NM_001318322, intron 2 of 11)	8065	NM_001197327	116835		NM_052970	ENSG00000132622	HSPA12B	C20orf60	heat shock protein family A (Hsp70) member 12B	protein-coding
111933	chr19	4754221	4754480	+	0	NA	Intergenic	MER66B|LTR|ERV1	-14755	NR_027148	284424		NM_174947	ENSG00000176840	MIR7-3HG	C19orf30|Huh7|LINC00306|NCRNA00306|PGSF1|uc002mbe.2	MIR7-3 host gene	ncRNA
45418	chr11	118362101	118362730	+	0	NA	intron (NM_004788, intron 1 of 19)	AluSg|SINE|Alu	2815	NM_004788	9354		NM_004788	ENSG00000110344	UBE4A	E4|NEDHMS|UBOX2|UFD2	ubiquitination factor E4A	protein-coding
213687	chr7	140108721	140109050	+	0	NA	intron (NM_030647, intron 11 of 19)	L1PA5|LINE|L1	-45934	NR_130117	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
109846	chr19	1209801	1210430	+	0	NA	intron (NM_000455, intron 1 of 9)	intron (NM_000455, intron 1 of 9)	4337	NM_000455	6794		NM_000455	ENSG00000118046	STK11	LKB1|PJS|hLKB1	serine/threonine kinase 11	protein-coding
65995	chr14	58199401	58200780	+	0	NA	promoter-TSS (NM_018477)	promoter-TSS (NM_018477)	-59	NM_018477	55860		NM_018477	ENSG00000131966	ACTR10	ACTR11|Arp10|Arp11|HARP11	actin related protein 10	protein-coding
14430	chr1	144373201	144373400	+	0	NA	exon (NM_001164262, exon 1 of 1)	exon (NM_001164262, exon 1 of 1)	359	NM_001164261	645142		NM_001164261	ENSG00000289549	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding
152847	chr22	22156751	22157350	+	0	NA	Intergenic	Intergenic	-87736	NM_001303509	7441		NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	V-set pre-B cell surrogate light chain 1	protein-coding
50947	chr12	49501851	49502150	+	0	NA	intron (NM_001293285, intron 10 of 14)	intron (NM_001293285, intron 10 of 14)	-37030	NM_001314030	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
18261	chr1	161071801	161072600	+	0	NA	3' UTR (NM_030916, exon 9 of 9)	3' UTR (NM_030916, exon 9 of 9)	-2309	NM_001287602	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
89243	chr16	88644821	88645350	+	0	NA	intron (NM_000101, intron 5 of 5)	intron (NM_000101, intron 5 of 5)	5968	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
171635	chr3	197556971	197557350	+	0	NA	intron (NM_203315, intron 1 of 6)	MER4A1|LTR|ERV1	-1192	NM_004051	622		NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding
123900	chr19	55337501	55337750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2251	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
178438	chr4	147837221	147837680	+	0	NA	intron (NM_024605, intron 3 of 22)	MLT1N2|LTR|ERVL-MaLR	54855	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
150529	chr21	42972001	42972480	+	0	NA	Intergenic	MER41B|LTR|ERV1	-2270	NM_001286258	5316		NM_004571	ENSG00000160199	PKNOX1	PREP1|pkonx1c	PBX/knotted 1 homeobox 1	protein-coding
38622	chr11	46341051	46341350	+	0	NA	intron (NM_201532, intron 1 of 30)	intron (NM_201532, intron 1 of 30)	-4067	NM_201533	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
237755	chrX	129721821	129722180	+	0	NA	Intergenic	Intergenic	-16979	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
120814	chr19	45480811	45481800	+	0	NA	Intergenic	AluSx|SINE|Alu	11948	NM_206901	6253		NM_005619	ENSG00000125744	RTN2	NSP2|NSPL1|NSPLI|SPG12	reticulon 2	protein-coding
232632	chr9	136454051	136454930	+	0	NA	intron (NM_014866, intron 20 of 31)	intron (NM_014866, intron 20 of 31)	-14645	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
233061	chr9	137076021	137076280	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1367	NM_207309	91373		NM_207309	ENSG00000197355	UAP1L1	-	UDP-N-acetylglucosamine pyrophosphorylase 1 like 1	protein-coding
65960	chr14	56120321	56120750	+	0	NA	intron (NM_021255, intron 1 of 5)	intron (NM_021255, intron 1 of 5)	2124	NM_021255	57161		NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding
86314	chr16	59260621	59261080	+	0	NA	Intergenic	Intergenic	494341	NR_028471	644649		NR_028471		APOOP5	-	apolipoprotein O pseudogene 5	pseudo
182725	chr5	68258301	68259050	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-29844	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
155449	chr22	38471171	38471330	+	0	NA	intron (NM_006855, intron 1 of 4)	intron (NM_006855, intron 1 of 4)	3154	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
119922	chr19	41753921	41754280	+	0	NA	Intergenic	L1MC4a|LINE|L1	-1430	NM_002483	4680		NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA|NCA-50/90	CEA cell adhesion molecule 6	protein-coding
123650	chr19	54754851	54755250	+	0	NA	promoter-TSS (NM_014512).27	promoter-TSS (NM_014512).27	40	NM_014512	3806		NM_014512		KIR2DS1	CD158H|CD158a|p50.1	killer cell immunoglobulin like receptor, two Ig domains and short cytoplasmic tail 1	protein-coding
236145	chrX	63526751	63527250	+	0	NA	intron (NR_152610, intron 1 of 4)	L2b|LINE|L2	34095	NR_152610	92249		NR_015353	ENSG00000235437	LINC01278	-	long intergenic non-protein coding RNA 1278	ncRNA
124383	chr19	58388771	58389180	+	0	NA	intron (NM_001009, intron 2 of 5)	L1M4|LINE|L1	1706	NM_001009	6193		NM_001009	ENSG00000083845	RPS5	S5|uS7	ribosomal protein S5	protein-coding
118232	chr19	35207401	35208300	+	0	NA	Intergenic	Intergenic	20875	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
19834	chr1	182863701	182863900	+	0	NA	intron (NM_001357, intron 12 of 27)	intron (NM_001357, intron 12 of 27)	-24209	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
85147	chr16	46391851	46391950	+	0	NA	Intergenic	Intergenic	177197	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
188454	chr5	154481021	154481500	+	0	NA	Intergenic	Intergenic	-3033	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
223156	chr8	143530771	143531330	+	0	NA	intron (NM_015117, intron 3 of 11)	AluJb|SINE|Alu	10397	NM_015117	23144		NM_015117	ENSG00000014164	ZC3H3	SMICL|ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding
136995	chr2	190537701	190538330	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-3293	NR_136298	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
19017	chr1	169648151	169649050	+	0	NA	Intergenic	L1MC1|LINE|L1	-18476	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
185828	chr5	132457301	132458150	+	0	NA	intron (NR_161242, intron 3 of 3)	intron (NR_161242, intron 3 of 3)	33048	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
18592	chr1	165592871	165593630	+	0	NA	Intergenic	Intergenic	-11095	NR_026744	400794		NR_026744	ENSG00000237463	LRRC52-AS1	-	LRRC52 antisense RNA 1	ncRNA
140846	chr2	237122271	237122530	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	36511	NM_006710	10920		NM_006710	ENSG00000198612	COPS8	COP9|CSN8|SGN8	COP9 signalosome subunit 8	protein-coding
43621	chr11	83188971	83189650	+	0	NA	intron (NR_149009, intron 2 of 2)	intron (NR_149009, intron 2 of 2)	-1826	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
59189	chr13	22073671	22074030	+	0	NA	Intergenic	Intergenic	-136435	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
35255	chr11	858071	858430	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	13804	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
54047	chr12	75934221	75934980	+	0	NA	Intergenic	Intergenic	97176	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
177060	chr4	108033501	108033700	+	0	NA	intron (NM_001184705, intron 8 of 8)	L1MD2|LINE|L1	28936	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
9741	chr1	53240521	53240780	+	0	NA	intron (NR_038953, intron 1 of 2)	MIRb|SINE|MIR	2040	NR_038953	100507564		NR_038953	ENSG00000226754	MAGOH-DT	-	MAGOH divergent transcript	ncRNA
79719	chr16	1319001	1320050	+	0	NA	intron (NM_194259, intron 5 of 7)	intron (NM_194259, intron 5 of 7)	9889	NM_003345	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
60816	chr13	45360571	45360730	+	0	NA	intron (NR_024458, intron 3 of 10)	AluJb|SINE|Alu	19305	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
135040	chr2	156327101	156328680	+	0	NA	exon (NM_006186, exon 5 of 8)	exon (NM_006186, exon 5 of 8)	4831	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
168335	chr3	141841271	141841430	+	0	NA	Intergenic	Intergenic	-35293	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
91844	chr17	7208651	7209150	+	0	NA	intron (NR_135527, intron 3 of 20)	intron (NR_135527, intron 3 of 20)	-1629	NM_001369566	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
97997	chr17	45300151	45300980	+	0	NA	intron (NM_003954, intron 1 of 15)	intron (NM_003954, intron 1 of 15)	16455	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
219029	chr8	65633371	65634530	+	0	NA	intron (NM_001286702, intron 1 of 5)	CpG	227	NM_018120	55156		NM_018120	ENSG00000104442	ARMC1	Arcp	armadillo repeat containing 1	protein-coding
36649	chr11	8002471	8003230	+	0	NA	Intergenic	Intergenic	13659	NR_125366	103581031		NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility 23	ncRNA
200473	chr6	135178821	135179180	+	0	NA	Intergenic	Intergenic	-2308	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
23980	chr1	235209271	235209850	+	0	NA	intron (NM_031371, intron 16 of 22)	AluSx1|SINE|Alu	-19444	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
213719	chr7	140267201	140268000	+	0	NA	Intergenic	Intergenic	90339	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
107458	chr18	46623051	46624100	+	0	NA	intron (NM_144612, intron 4 of 39)	intron (NM_144612, intron 4 of 39)	33645	NM_001384474	125336		NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology PLAT domains 1	protein-coding
183188	chr5	75681301	75681730	+	0	NA	intron (NM_001099271, intron 10 of 11)	intron (NM_001099271, intron 10 of 11)	30940	NM_152408	134359		NM_152408	ENSG00000152359	POC5	C5orf37	POC5 centriolar protein	protein-coding
58964	chr13	19848401	19848600	+	0	NA	intron (NM_001142684, intron 4 of 7)	AluJo|SINE|Alu	15136	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
121731	chr19	47719571	47719730	+	0	NA	intron (NM_014601, intron 3 of 5)	intron (NM_014601, intron 3 of 5)	6228	NM_014601	30846		NM_014601	ENSG00000024422	EHD2	PAST2	EH domain containing 2	protein-coding
216777	chr8	22501601	22501950	+	0	NA	intron (NM_005605, intron 4 of 13)	AluJr4|SINE|Alu	-50152	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
117812	chr19	29946771	29947230	+	0	NA	intron (NR_045557, intron 1 of 9)	L2a|LINE|L2	4761	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
157892	chr22	49752571	49753400	+	0	NA	Intergenic	Intergenic	71346	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
228135	chr9	96720651	96720780	+	0	NA	Intergenic	Intergenic	-5106	NR_026792	441455		NR_026792		LOC441455	-	makorin ring finger protein 1 pseudogene	pseudo
222517	chr8	140552751	140553050	+	0	NA	intron (NM_012154, intron 10 of 18)	MER20|DNA|hAT-Charlie	40904	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
63880	chr14	21776151	21776250	+	0	NA	Intergenic	Intergenic	-105183	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
211332	chr7	104857851	104858150	+	0	NA	intron (NM_199000, intron 2 of 2)	intron (NM_199000, intron 2 of 2)	-53908	NR_034142	645591		NR_034141	ENSG00000226869	LHFPL3-AS1	-	LHFPL3 antisense RNA 1	ncRNA
166480	chr3	114290621	114291830	+	0	NA	Intergenic	Intergenic	-2803	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
29124	chr10	68423571	68424230	+	0	NA	intron (NR_102264, intron 15 of 21)	L1MDa|LINE|L1	-16606	NM_001278225	55680		NM_017987	ENSG00000204130	RUFY2	RABIP4R|ZFYVE13	RUN and FYVE domain containing 2	protein-coding
199463	chr6	117678601	117678900	+	0	NA	intron (NM_138459, intron 1 of 4)	AluSx|SINE|Alu	3281	NM_138459	116150		NM_138459	ENSG00000153989	NUS1	C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding
205220	chr7	7965671	7966030	+	0	NA	intron (NR_110018, intron 1 of 4)	intron (NR_110018, intron 1 of 4)	2902	NR_110018	100505921		NR_110018		GLCCI1-DT	-	GLCCI1 divergent transcript	ncRNA
92730	chr17	14299271	14300000	+	0	NA	Intergenic	CpG	-1446	NR_130138	9953		NM_006041	ENSG00000125430	HS3ST3B1	3-OST-3B|3OST3B1|h3-OST-3B	heparan sulfate-glucosamine 3-sulfotransferase 3B1	protein-coding
57501	chr12	122097721	122098600	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	19404	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
221052	chr8	116787471	116787630	+	0	NA	Intergenic	AluY|SINE|Alu	21026	NM_032334	84294		NM_032334	ENSG00000147679	UTP23	C8orf53	UTP23 small subunit processome component	protein-coding
175593	chr4	75672251	75674280	+	0	NA	promoter-TSS (NM_012297)	promoter-TSS (NM_012297)	-106	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
206641	chr7	36150751	36151250	+	0	NA	Intergenic	L1ME1|LINE|L1	-2254	NM_030636	80820		NM_030636	ENSG00000122547	EEPD1	HSPC107	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
43570	chr11	83063021	83063980	+	0	NA	intron (NM_014488, intron 1 of 5)	intron (NM_014488, intron 1 of 5)	7962	NM_001286061	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
98905	chr17	48594851	48594950	+	0	NA	TTS (NM_018952)	TTS (NM_018952)	-1058	NR_110330	404266		NR_033201	ENSG00000233101	HOXB-AS3	-	HOXB cluster antisense RNA 3	ncRNA
219247	chr8	67061621	67063250	+	0	NA	promoter-TSS (NM_006837)	promoter-TSS (NM_006837)	-302	NM_006837	10987		NM_006837	ENSG00000121022	COPS5	CSN5|JAB1|MOV-34|SGN5	COP9 signalosome subunit 5	protein-coding
239371	chrY	20798321	20798930	+	0	NA	Intergenic	HERV1_I-int|LTR|ERV1	42517	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
224213	chr9	5582951	5583480	+	0	NA	Intergenic	Intergenic	-45892	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
196591	chr6	44218751	44218850	+	0	NA	promoter-TSS (NM_001304466)	promoter-TSS (NM_001304466)	-815	NM_001304465	2030		NM_004955	ENSG00000112759	SLC29A1	AUG|ENT1|hENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding
178867	chr4	154618701	154618930	+	0	NA	Intergenic	L2a|LINE|L2	-6007	NM_000509	2266		NM_000509	ENSG00000171557	FGG	-	fibrinogen gamma chain	protein-coding
186255	chr5	134511021	134511700	+	0	NA	Intergenic	L2a|LINE|L2	4808	NR_105045	101927934		NR_105045	ENSG00000251169	LINC01843	Lnc-APUE	long intergenic non-protein coding RNA 1843	ncRNA
128707	chr2	61670201	61670400	+	0	NA	Intergenic	AluSq2|SINE|Alu	-131944	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
20916	chr1	202186701	202186900	+	0	NA	intron (NR_002930, intron 17 of 21)	intron (NR_002930, intron 17 of 21)	-7190	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
224982	chr9	33100721	33100980	+	0	NA	Intergenic	MER41B|LTR|ERV1	-7842	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
42784	chr11	72776051	72776350	+	0	NA	intron (NM_006645, intron 2 of 6)	intron (NM_006645, intron 2 of 6)	-7330	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
78313	chr15	90934801	90936680	+	0	NA	intron (NM_001323619, intron 3 of 20)	CpG-8620	455	NM_018671	55898		NM_017979	ENSG00000140553	UNC45A	GC-UNC45|GCUNC-45|GCUNC45|IRO039700|OOHE|SMAP-1|SMAP1|UNC-45A	unc-45 myosin chaperone A	protein-coding
94012	chr17	26594771	26595030	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	494341	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
219323	chr8	70159951	70161300	+	0	NA	intron (NM_001321713, intron 8 of 21)	intron (NM_001321713, intron 8 of 21)	-89373	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
38275	chr11	40294101	40294300	+	0	NA	intron (NM_001258419, intron 4 of 6)	intron (NM_001258419, intron 4 of 6)	-1070	NR_047674	57689		NM_020929	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding
193479	chr6	30539471	30540780	+	0	NA	Intergenic	AluSc8|SINE|Alu	-16584	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
121959	chr19	48476771	48476930	+	0	NA	intron (NM_017457, intron 8 of 11)	AluSx1|SINE|Alu	7481	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
119044	chr19	39046021	39046630	+	0	NA	Intergenic	MER66C|LTR|ERV1	-13776	NM_178820	126433		NM_178820	ENSG00000161243	FBXO27	FBG5|Fbx27	F-box protein 27	protein-coding
56709	chr12	120095071	120095430	+	0	NA	TTS (NM_207311)	TTS (NM_207311)	21503	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
196417	chr6	43397471	43398400	+	0	NA	Intergenic	HERVP71A-int|LTR|ERV1	-28288	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
51032	chr12	49753851	49754150	+	0	NA	intron (NM_001098576, intron 3 of 9)	Tigger17a|DNA|TcMar-Tigger	12191	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
167513	chr3	129263251	129263550	+	0	NA	intron (NM_016128, intron 12 of 23)	L2a|LINE|L2	-8746	NR_106884	102465496		NR_106884	ENSG00000278658	MIR6826	hsa-mir-6826	microRNA 6826	ncRNA
25860	chr10	11242051	11243050	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	77520	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
77848	chr15	88657171	88658300	+	0	NA	Intergenic	MIRc|SINE|MIR	18719	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
58328	chr12	131392601	131392800	+	0	NA	Intergenic	Intergenic	45230	NR_103736	338797		NM_001025466		LINC02370	-	long intergenic non-protein coding RNA 2370	ncRNA
234551	chrX	19723401	19723600	+	0	NA	intron (NM_001353892, intron 3 of 17)	intron (NM_001353892, intron 3 of 17)	-52501	NM_001353897	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
82961	chr16	21921621	21921980	+	0	NA	Intergenic	AluJb|SINE|Alu	-31561	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
134262	chr2	135651871	135652230	+	0	NA	intron (NM_001378107, intron 18 of 26)	intron (NM_001378107, intron 18 of 26)	-13347	NR_029672	406915		NR_029672	ENSG00000207654	MIR128-1	MIR128A|MIRN128-1|MIRN128A|mir-128-1	microRNA 128-1	ncRNA
222760	chr8	141492271	141492500	+	0	NA	intron (NM_207414, intron 4 of 29)	intron (NM_207414, intron 4 of 29)	14844	NR_160399	389690		NM_207414	ENSG00000226807	MROH5	-	maestro heat like repeat family member 5 (gene/pseudogene)	protein-coding
144871	chr20	36910401	36911230	+	0	NA	intron (NM_001363733, intron 11 of 15)	MIRb|SINE|MIR	34677	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
152525	chr22	20967621	20967930	+	0	NA	intron (NM_001146288, intron 1 of 19)	intron (NM_001146288, intron 1 of 19)	520	NM_001146288	150209		NM_144704	ENSG00000183773	AIFM3	AIFL	apoptosis inducing factor mitochondria associated 3	protein-coding
222491	chr8	140455851	140455950	+	0	NA	intron (NM_031466, intron 1 of 22)	L1MB7|LINE|L1	1844	NM_001160372	83696		NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex subunit 9	protein-coding
208492	chr7	67303951	67304050	+	0	NA	intron (NR_040586, intron 1 of 4)	AluSc|SINE|Alu	1362	NR_040586	64940		NM_022906	ENSG00000291153	STAG3L4	STAG3L4P	STAG3 cohesin complex component like 4 (pseudogene)	pseudo
154870	chr22	37134671	37134830	+	0	NA	intron (NM_000878, intron 8 of 9)	L2b|LINE|L2	15166	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
64304	chr14	23564301	23564700	+	0	NA	intron (NM_001354675, intron 7 of 18)	intron (NM_001354675, intron 7 of 18)	3291	NM_003917	8906		NM_003917	ENSG00000213983	AP1G2	G2AD	adaptor related protein complex 1 subunit gamma 2	protein-coding
163356	chr3	50447801	50448000	+	0	NA	intron (NM_006030, intron 2 of 37)	intron (NM_006030, intron 2 of 37)	55734	NM_001174051	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
121609	chr19	47417501	47418150	+	0	NA	intron (NM_001346148, intron 1 of 12)	intron (NM_001346148, intron 1 of 12)	1702	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
204964	chr7	6373001	6375200	+	0	NA	promoter-TSS (NM_006908)	promoter-TSS (NM_006908)	-427	NM_006908	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
154345	chr22	32473221	32473730	+	0	NA	Intergenic	L2a|LINE|L2	-1336	NM_012179	25793		NM_012179	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
124089	chr19	55638351	55638450	+	0	NA	Intergenic	AluSc|SINE|Alu	-2602	NM_207115	51157		NM_016202	ENSG00000213015	ZNF580	-	zinc finger protein 580	protein-coding
25895	chr10	11272571	11272730	+	0	NA	intron (NM_001326330, intron 7 of 12)	L3|LINE|CR1	72024	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
21409	chr1	205294751	205295050	+	0	NA	Intergenic	Intergenic	26845	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
69361	chr14	94007671	94007830	+	0	NA	TTS (NR_024182)	TTS (NR_024182)	10449	NM_001351596	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
25401	chr10	6528471	6528930	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	51576	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
75735	chr15	68256651	68257310	+	0	NA	Intergenic	Intergenic	-20765	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
24016	chr1	235263001	235263200	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-64116	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
220830	chr8	102858021	102858280	+	0	NA	5' UTR (NM_001363013, exon 2 of 12)	5' UTR (NM_001363013, exon 2 of 12)	6013	NM_001301668	51582		NM_015878	ENSG00000155096	AZIN1	AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
187341	chr5	141672871	141673030	+	0	NA	intron (NM_022481, intron 7 of 32)	intron (NM_022481, intron 7 of 32)	9280	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
180729	chr5	31638771	31640030	+	0	NA	5' UTR (NM_178140, exon 1 of 25)	5' UTR (NM_178140, exon 1 of 25)	269	NM_178140	23037		NM_015022	ENSG00000133401	PDZD2	AIPC|PAPIN|PDZK3|PIN1	PDZ domain containing 2	protein-coding
77141	chr15	79895101	79895500	+	0	NA	intron (NM_001199760, intron 2 of 3)	L2c|LINE|L2	1697	NR_037654	10588		NM_006441	ENSG00000136371	MTHFS	HsT19268|NEDMEHM	methenyltetrahydrofolate synthetase	protein-coding
90912	chr17	2530871	2531950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-19522	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
129164	chr2	68062421	68063220	+	0	NA	intron (NM_001190263, intron 1 of 5)	intron (NM_001190263, intron 1 of 5)	184	NM_173177	10438		NM_006333	ENSG00000197223	C1D	LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
2630	chr1	10213301	10213500	+	0	NA	intron (NM_001365952, intron 1 of 48)	intron (NM_001365952, intron 1 of 48)	1784	NM_001365952	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
214546	chr7	150524801	150525100	+	0	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	10078	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
11694	chr1	91851651	91851750	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	34451	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
116848	chr19	18601421	18601680	+	0	NA	intron (NM_004750, intron 1 of 8)	AluSp|SINE|Alu	5249	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
77994	chr15	89556551	89556980	+	0	NA	Intergenic	Intergenic	-18704	NM_152259	90381		NM_152259	ENSG00000140534	TICRR	C15orf42|SLD3|Treslin	TOPBP1 interacting checkpoint and replication regulator	protein-coding
62591	chr13	100000271	100000630	+	0	NA	Intergenic	AluSz|SINE|Alu	-2541	NR_047483	100861542		NR_047483	ENSG00000260738	LINC00554	lncZic2	long intergenic non-protein coding RNA 554	ncRNA
44571	chr11	108231601	108232000	+	0	NA	intron (NM_000051, intron 4 of 62)	LTR86A1|LTR|ERVL	8271	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
140182	chr2	231663701	231664450	+	0	NA	Intergenic	AluSx|SINE|Alu	-44450	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
71847	chr15	22227451	22227750	+	0	NA	Intergenic	Intergenic	-2271	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
64188	chr14	22994751	22995050	+	0	NA	intron (NM_021944, intron 3 of 6)	MER20|DNA|hAT-Charlie	6137	NM_001282969	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
41546	chr11	66291421	66293400	+	0	NA	intron (NM_153266, intron 1 of 1)	CpG	516	NM_153266	256472		NM_153266	ENSG00000179292	TMEM151A	DYT36|EKD3|TMEM151	transmembrane protein 151A	protein-coding
184933	chr5	112977791	112978250	+	0	NA	intron (NR_038352, intron 1 of 8)	AluSg7|SINE|Alu	1222	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
42142	chr11	67649171	67649700	+	0	NA	intron (NM_080658, intron 1 of 7)	intron (NM_080658, intron 1 of 7)	1295	NM_080658	91703		NM_080658	ENSG00000132744	ACY3	ACY-3|HCBP1	aminoacylase 3	protein-coding
192466	chr6	24923801	24924450	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	11835	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
3079	chr1	12187621	12188050	+	0	NA	intron (NM_001066, intron 1 of 9)	LTR16A1|LTR|ERVL	-3878	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
39730	chr11	61788051	61788750	+	0	NA	TTS (NM_014206)	TTS (NM_014206)	4161	NR_030342	693196		NR_030342	ENSG00000284108	MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
212326	chr7	127384121	127384380	+	0	NA	intron (NM_176814, intron 3 of 5)	AluYk4|SINE|Alu	8458	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
48819	chr12	12172071	12172430	+	0	NA	intron (NM_002336, intron 7 of 22)	intron (NM_002336, intron 7 of 22)	60298	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
163277	chr3	50312401	50312600	+	0	NA	promoter-TSS (NM_153281)	promoter-TSS (NM_153281)	-119	NM_153281	3373		NM_033159	ENSG00000114378	HYAL1	HYAL-1|LUCA1|MPS9|NAT6	hyaluronidase 1	protein-coding
38887	chr11	47392921	47393630	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-7695	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
64881	chr14	35352421	35353080	+	0	NA	Intergenic	Intergenic	51999	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
166219	chr3	112086021	112087280	+	0	NA	intron (NM_024616, intron 1 of 5)	CpG	261	NM_024616	79669		NM_024616	ENSG00000114529	C3orf52	HYPT15|TTMP	chromosome 3 open reading frame 52	protein-coding
23428	chr1	228403221	228403500	+	0	NA	intron (NM_145214, intron 1 of 5)	MIRc|SINE|MIR	3475	NM_145214	81559		NM_145214	ENSG00000154370	TRIM11	BIA1|RNF92	tripartite motif containing 11	protein-coding
97683	chr17	44307071	44307230	+	0	NA	intron (NR_110802, intron 2 of 3)	U6|snRNA|snRNA	1281	NR_110802	101926996		NR_110802		RUNDC3A-AS1	-	RUNDC3A antisense RNA 1	ncRNA
190797	chr6	900551	900650	+	0	NA	Intergenic	L1MC4|LINE|L1	32102	NR_110853	101927691		NR_110853		LOC101927691	-	uncharacterized LOC101927691	ncRNA
174708	chr4	42633871	42634180	+	0	NA	intron (NM_001105529, intron 1 of 35)	intron (NM_001105529, intron 1 of 35)	23080	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
179539	chr4	184983551	184984350	+	0	NA	Intergenic	Intergenic	-34891	NM_001300782	391723		NM_001029887	ENSG00000187821	HELT	HCM1228|HESL|Mgn|bHLHb44	helt bHLH transcription factor	protein-coding
62262	chr13	98567151	98567330	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	9867	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
16065	chr1	153339921	153340250	+	0	NA	intron (NM_020393, intron 7 of 8)	intron (NM_020393, intron 7 of 8)	8756	NM_020393	57115		NM_020393	ENSG00000163218	PGLYRP4	PGLYRPIbeta|PGRP-Ibeta|PGRPIB|SBBI67	peptidoglycan recognition protein 4	protein-coding
165631	chr3	101758251	101758700	+	0	NA	intron (NM_024548, intron 9 of 10)	intron (NM_024548, intron 9 of 10)	-20736	NM_001348993	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
109182	chr19	352021	352480	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	-7409	NM_017550	54531		NM_017550	ENSG00000105556	MIER2	KIAA1193|Mi-er2	MIER family member 2	protein-coding
226566	chr9	72458471	72458900	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	-62923	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
89718	chr16	89414651	89415150	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-16018	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
143360	chr20	26008651	26009050	+	0	NA	promoter-TSS (NR_004846)	promoter-TSS (NR_004846)	-949	NR_004846	100134868		NR_004846		LOC100134868	-	uncharacterized LOC100134868	ncRNA
124868	chr2	8300921	8301180	+	0	NA	intron (NR_034135, intron 2 of 8)	ERV3-16A3_I-int|LTR|ERVL	27369	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
12496	chr1	108016551	108016650	+	0	NA	Intergenic	Intergenic	-51420	NM_006113	10451		NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding
160808	chr3	33016621	33017280	+	0	NA	intron (NM_000404, intron 13 of 15)	intron (NM_000404, intron 13 of 15)	65306	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
104225	chr17	80664951	80665830	+	0	NA	intron (NM_020761, intron 3 of 33)	(TTTCC)n|Simple_repeat|Simple_repeat	120552	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
16090	chr1	153543351	153543750	+	0	NA	TTS (NM_019554)	TTS (NM_019554)	-1741	NM_002962	6276		NM_002962	ENSG00000196420	S100A5	S100D	S100 calcium binding protein A5	protein-coding
153361	chr22	24431651	24431750	+	0	NA	promoter-TSS (NM_001278498)	promoter-TSS (NM_001278498)	-419	NM_001278498	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
739	chr1	1475251	1475550	+	0	NA	intron (NM_031921, intron 1 of 15)	intron (NM_031921, intron 1 of 15)	-2449	NM_001317238	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
84274	chr16	30063371	30064500	+	0	NA	promoter-TSS (NM_001127617)	promoter-TSS (NM_001127617)	-344	NM_184043	226		NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase, fructose-bisphosphate A	protein-coding
31524	chr10	96832701	96834130	+	0	NA	promoter-TSS (NR_135921)	promoter-TSS (NR_135921)	470	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
14229	chr1	143218901	143219130	+	0	NA	Intergenic	Intergenic	203577	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
183204	chr5	76104171	76104330	+	0	NA	intron (NM_014979, intron 1 of 12)	intron (NM_014979, intron 1 of 12)	20867	NM_014979	22987		NM_014979	ENSG00000122012	SV2C	SLC22B3	synaptic vesicle glycoprotein 2C	protein-coding
126189	chr2	26765701	26766330	+	0	NA	intron (NM_017877, intron 1 of 5)	intron (NM_017877, intron 1 of 5)	1731	NM_017877	54978		NM_017877	ENSG00000213699	SLC35F6	ANT2BP|C2orf18|TANGO9	solute carrier family 35 member F6	protein-coding
64723	chr14	34458321	34458580	+	0	NA	intron (NM_138288, intron 1 of 1)	AluSz6|SINE|Alu	3790	NM_138288	171546		NM_138288	ENSG00000165389	SPTSSA	C14orf147|SPG90A|SPG90B|SSSPTA	serine palmitoyltransferase small subunit A	protein-coding
21619	chr1	206576671	206577230	+	0	NA	intron (NM_182665, intron 1 of 4)	AluJo|SINE|Alu	19786	NM_182665	83593		NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
25611	chr10	8067651	8068150	+	0	NA	intron (NM_001002295, intron 4 of 5)	intron (NM_001002295, intron 4 of 5)	13212	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
102843	chr17	76474471	76475000	+	0	NA	exon (NM_001376229, exon 11 of 19)	exon (NM_001376229, exon 11 of 19)	7132	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
205556	chr7	20331571	20331800	+	0	NA	promoter-TSS (NR_110119)	promoter-TSS (NR_110119)	77	NR_110119	101927811		NR_110119	ENSG00000271133	ITGB8-AS1	-	ITGB8 antisense RNA 1	ncRNA
26383	chr10	16843251	16843650	+	0	NA	intron (NM_001081, intron 60 of 66)	intron (NM_001081, intron 60 of 66)	-25996	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
230523	chr9	128339051	128339400	+	0	NA	Intergenic	AluJr|SINE|Alu	-1302	NM_005094	10999		NM_005094	ENSG00000167114	SLC27A4	ACSVL4|FATP4|IPS	solute carrier family 27 member 4	protein-coding
74832	chr15	63497701	63499730	+	0	NA	Intergenic	AluSg|SINE|Alu	-5796	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
231626	chr9	131586451	131586550	+	0	NA	intron (NM_001377935, intron 22 of 26)	intron (NM_001377935, intron 22 of 26)	40977	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
100070	chr17	58217551	58219980	+	0	NA	intron (NM_001165927, intron 1 of 17)	intron (NM_001165927, intron 1 of 17)	490	NM_001321269	54903		NM_017777	ENSG00000011143	MKS1	BBS13|JBTS28|MES|MKS|POC12	MKS transition zone complex subunit 1	protein-coding
79250	chr16	400501	402630	+	0	NA	promoter-TSS (NM_020664)	promoter-TSS (NM_020664)	-320	NM_020664	26063		NM_020664	ENSG00000242612	DECR2	PDCR|SDR17C1	2,4-dienoyl-CoA reductase 2	protein-coding
210571	chr7	100356221	100356630	+	0	NA	promoter-TSS (NR_106899)	promoter-TSS (NR_106899)	-226	NR_106899	102466747		NR_106899	ENSG00000284012	MIR6840	hsa-mir-6840	microRNA 6840	ncRNA
124896	chr2	8455471	8456510	+	0	NA	Intergenic	Intergenic	-127571	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
24792	chr1	248943171	248943330	+	0	NA	Intergenic	LTR60B|LTR|ERV1	37007	NM_001017434	267002		NM_170725	ENSG00000185220	PGBD2	-	piggyBac transposable element derived 2	protein-coding
131120	chr2	90325071	90325850	+	0	NA	Intergenic	CpG	-687553	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
226598	chr9	73156501	73157130	+	0	NA	intron (NM_000700, intron 1 of 12)	intron (NM_000700, intron 1 of 12)	4950	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
200918	chr6	139144251	139145100	+	0	NA	intron (NM_016217, intron 1 of 3)	intron (NM_016217, intron 1 of 3)	9595	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
45608	chr11	118903401	118904000	+	0	NA	intron (NM_001378214, intron 4 of 8)	MIRb|SINE|MIR	6842	NM_182557	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
20081	chr1	186323971	186324130	+	0	NA	intron (NM_003292, intron 42 of 50)	MIRb|SINE|MIR	27771	NM_005807	10216		NM_005807	ENSG00000116690	PRG4	CACP|HAPO|JCAP|MSF|SZP	proteoglycan 4	protein-coding
91998	chr17	7443721	7444100	+	0	NA	non-coding (NR_130156, exon 5 of 5)	non-coding (NR_130156, exon 5 of 5)	-1151	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
4232	chr1	19481451	19482400	+	0	NA	intron (NM_001206541, intron 1 of 8)	L2a|LINE|L2	2370	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
235443	chrX	46320371	46320930	+	0	NA	Intergenic	Intergenic	7024	NR_110388	101927574		NR_110388		LINC01186	ZNF674-1	long intergenic non-protein coding RNA 1186	ncRNA
13431	chr1	114330401	114331100	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-176881	NM_001366226	148281		NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding
945	chr1	1741771	1742130	+	0	NA	intron (NM_182838, intron 1 of 5)	AluYm1|SINE|Alu	4049	NM_182838	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
234045	chrX	3940171	3940330	+	0	NA	Intergenic	Intergenic	-19508	NR_146578	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
78202	chr15	90581721	90582580	+	0	NA	intron (NM_001042574, intron 2 of 14)	intron (NM_001042574, intron 2 of 14)	52227	NM_022769	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
129505	chr2	69634321	69635300	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	8928	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
133694	chr2	127185251	127185350	+	0	NA	3' UTR (NM_001001665, exon 8 of 8)	3' UTR (NM_001001665, exon 8 of 8)	20467	NM_001001665	339761		NM_001001665	ENSG00000186684	CYP27C1	-	cytochrome P450 family 27 subfamily C member 1	protein-coding
27025	chr10	26851251	26851850	+	0	NA	intron (NM_001178116, intron 1 of 11)	intron (NM_001178116, intron 1 of 11)	9408	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
108726	chr18	77088971	77089400	+	0	NA	intron (NM_001025100, intron 2 of 3)	LTR53|LTR|ERVL	43598	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
85565	chr16	53452651	53453000	+	0	NA	intron (NM_001323609, intron 5 of 20)	AluJo|SINE|Alu	17206	NM_001323611	5934		NM_005611	ENSG00000103479	RBL2	BRUWAG|P130|Rb2	RB transcriptional corepressor like 2	protein-coding
9760	chr1	53367801	53368650	+	0	NA	Intergenic	MIRc|SINE|MIR	39992	NR_131923	105378732		NR_131923	ENSG00000225675	LRP8-DT	LINC01771	LRP8 divergent transcript	ncRNA
37481	chr11	18382171	18382600	+	0	NA	Intergenic	AluY|SINE|Alu	-5402	NR_036116	100423016		NR_036116	ENSG00000264603	MIR3159	-	microRNA 3159	ncRNA
195950	chr6	41934951	41935250	+	0	NA	3' UTR (NM_001136125, exon 4 of 4)	3' UTR (NM_001136125, exon 4 of 4)	6708	NM_001760	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
175307	chr4	68306021	68306280	+	0	NA	Intergenic	L1MA9|LINE|L1	43940	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
87849	chr16	75659321	75659880	+	0	NA	Intergenic	Intergenic	11827	NM_018975	54386		NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding
192498	chr6	24980421	24981080	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-44790	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
165709	chr3	102222571	102222730	+	0	NA	Intergenic	L1P3|LINE|L1	58945	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
149070	chr21	15688701	15689400	+	0	NA	Intergenic	MADE1|DNA|TcMar-Mariner	-40884	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
24981	chr10	3071471	3071930	+	0	NA	intron (NM_001345944, intron 1 of 21)	intron (NM_001345944, intron 1 of 21)	2511	NM_001345944	5214		NM_002627	ENSG00000067057	PFKP	ATP-PFK|PFK-C|PFK-P|PFKF	phosphofructokinase, platelet	protein-coding
94796	chr17	31098651	31099350	+	0	NA	intron (NM_001042492, intron 1 of 57)	intron (NM_001042492, intron 1 of 57)	4023	NM_001042492	4763		NM_000267	ENSG00000196712	NF1	NFNS|VRNF|WSS	neurofibromin 1	protein-coding
47350	chr12	1993101	1993700	+	0	NA	intron (NR_135060, intron 2 of 10)	intron (NR_135060, intron 2 of 10)	11057	NM_152640	196513		NM_152640	ENSG00000151065	DCP1B	DCP1	decapping mRNA 1B	protein-coding
124437	chr19	58484501	58485130	+	0	NA	intron (NM_001304453, intron 5 of 5)	AluJb|SINE|Alu	7636	NM_001304453	55663		NM_017908	ENSG00000083838	ZNF446	ZKSCAN20|ZSCAN30|ZSCAN52	zinc finger protein 446	protein-coding
133793	chr2	127782821	127783480	+	0	NA	intron (NM_001006623, intron 1 of 7)	MER2|DNA|TcMar-Tigger	28021	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
85590	chr16	53506171	53506330	+	0	NA	Intergenic	Intergenic	-2946	NM_001308325	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
195600	chr6	37619201	37619800	+	0	NA	Intergenic	Intergenic	-64078	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA
36071	chr11	2982971	2983480	+	0	NA	intron (NM_001369380, intron 1 of 14).2	L2a|LINE|L2	7878	NM_001369379	4676		NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding
159071	chr3	11784721	11785580	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	61735	NR_135611	132001		NM_138807	ENSG00000144559	TAMM41	C3orf31|COXPD56|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
67734	chr14	73566971	73567330	+	0	NA	promoter-TSS (NR_046028)	promoter-TSS (NR_046028)	-470	NR_046028	10965		NM_006821	ENSG00000119673	ACOT2	CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128	acyl-CoA thioesterase 2	protein-coding
30425	chr10	79024671	79026200	+	0	NA	intron (NR_015429, intron 3 of 7)	intron (NR_015429, intron 3 of 7)	42013	NR_024431	283050		NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA
63536	chr14	17156151	17156250	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1444917	NM_001013354	440153		NM_001013354	ENSG00000257115	OR11H12	-	olfactory receptor family 11 subfamily H member 12	protein-coding
30373	chr10	78031821	78032080	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1810	NM_001142284	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
70215	chr14	100617151	100617700	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-30008	NM_001385089	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
44620	chr11	108698151	108698450	+	0	NA	intron (NM_004398, intron 9 of 17)	intron (NM_004398, intron 9 of 17)	33231	NM_004398	1662		NM_004398	ENSG00000178105	DDX10	Dbp4|HRH-J8	DEAD-box helicase 10	protein-coding
53952	chr12	71865101	71865580	+	0	NA	intron (NM_001146214, intron 2 of 17)	L1MA5|LINE|L1	-14357	NR_024072	729633		NR_024072		MRS2P2	-	MRS2 pseudogene 2	pseudo
28109	chr10	43398171	43398750	+	0	NA	intron (NM_001098204, intron 1 of 3)	AluSg|SINE|Alu	-1114	NM_001098207	3185		NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding
67472	chr14	70894021	70894280	+	0	NA	Intergenic	Intergenic	-13309	NM_001308160	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
125761	chr2	23380751	23381730	+	0	NA	Intergenic	Intergenic	-3939	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
176066	chr4	82463371	82463530	+	0	NA	Intergenic	L2b|LINE|L2	32860	NM_001292017	58478		NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145|mtnC	enolase-phosphatase 1	protein-coding
183810	chr5	82641401	82641600	+	0	NA	Intergenic	Intergenic	-198655	NR_039773	100616297		NR_039773	ENSG00000283359	MIR3977	-	microRNA 3977	ncRNA
122608	chr19	49800501	49800780	+	0	NA	intron (NM_014203, intron 11 of 23)	AluSx|SINE|Alu	8774	NR_106857	102465479		NR_106857	ENSG00000276270	MIR6799	hsa-mir-6799	microRNA 6799	ncRNA
139748	chr2	229897771	229897930	+	0	NA	intron (NM_001348335, intron 1 of 5)	intron (NM_001348335, intron 1 of 5)	23829	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
111721	chr19	4339701	4340180	+	0	NA	Intergenic	AluSz6|SINE|Alu	-1113	NM_017720	55620		NM_017720	ENSG00000178078	STAP2	BKS	signal transducing adaptor family member 2	protein-coding
28307	chr10	46240901	46241440	+	0	NA	intron (NR_103828, intron 2 of 2)	L1M2|LINE|L1	28438	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
35404	chr11	1389151	1391750	+	0	NA	intron (NM_001256629, intron 1 of 19)	CpG-3846	516	NM_003957	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
153438	chr22	25073571	25073730	+	0	NA	intron (NM_001145206, intron 4 of 10)	L1MA9|LINE|L1	39042	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
219359	chr8	70363201	70363480	+	0	NA	intron (NM_001321703, intron 1 of 22)	AluY|SINE|Alu	40050	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
131773	chr2	98479601	98481030	+	0	NA	intron (NM_001351429, intron 1 of 23)	MIRb|SINE|MIR	34305	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
229039	chr9	114327371	114328200	+	0	NA	Intergenic	Intergenic	-2084	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
96660	chr17	40649571	40650130	+	0	NA	Intergenic	Intergenic	-2032	NM_003079	6605		NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding
169133	chr3	155888421	155888680	+	0	NA	intron (NM_003875, intron 1 of 15)	AluJo|SINE|Alu	17900	NM_003875	8833		NM_003875	ENSG00000163655	GMPS	GATD7	guanine monophosphate synthase	protein-coding
180654	chr5	17523551	17524280	+	0	NA	Intergenic	AluSx|SINE|Alu	-31839	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
1316	chr1	2405521	2406630	+	0	NA	TTS (NM_007033)	TTS (NM_007033)	6489	NM_002617	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
175801	chr4	77812121	77813100	+	0	NA	intron (NM_001365006, intron 1 of 11)	L1MB8|LINE|L1	6454	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
208774	chr7	73560051	73560650	+	0	NA	Intergenic	Intergenic	-2660	NM_001197244	9275		NM_001707	ENSG00000106635	BCL7B	SMARCJ2	BAF chromatin remodeling complex subunit BCL7B	protein-coding
161122	chr3	38374051	38375300	+	0	NA	intron (NM_005108, intron 11 of 18)	intron (NM_005108, intron 11 of 18)	27890	NM_001349178	9942		NM_005108	ENSG00000093217	XYLB	-	xylulokinase	protein-coding
12285	chr1	100623871	100624050	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	23044	NR_038914	100128787		NR_038914		LINC01349	-	long intergenic non-protein coding RNA 1349	ncRNA
66082	chr14	59187911	59189600	+	0	NA	promoter-TSS (NM_001270520)	promoter-TSS (NM_001270520)	88	NM_001270520	23002		NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding
122958	chr19	50759901	50760100	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-10464	NM_001506	2854		NM_001506	ENSG00000142511	GPR32	DRV1|RVDR1	G protein-coupled receptor 32	protein-coding
16320	chr1	154206001	154206480	+	0	NA	promoter-TSS (NM_001010979)	promoter-TSS (NM_001010979)	93	NM_001010979	388701		NM_001010979	ENSG00000163263	CFAP141	C1orf189	cilia and flagella associated protein 141	protein-coding
196803	chr6	45991251	45991500	+	0	NA	intron (NM_001370649, intron 1 of 5)	MLT1E|LTR|ERVL-MaLR	24485	NM_016929	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
96695	chr17	41336051	41336150	+	0	NA	Intergenic	Intergenic	14728	NM_004138	3883		NM_004138	ENSG00000006059	KRT33A	HA3I|Ha-3I|K33A|KRTHA3A|Krt1-3|hHa3-I	keratin 33A	protein-coding
170638	chr3	187039771	187040430	+	0	NA	intron (NM_173217, intron 3 of 6)	MIRc|SINE|MIR	1382	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
125490	chr2	12501401	12502000	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-215172	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
180904	chr5	34189351	34190030	+	0	NA	non-coding (NR_157803, exon 1 of 1)	non-coding (NR_157803, exon 1 of 1)	109	NR_157803	646652		NR_157803		LOC646652	-	integral membrane glycoprotein-like pseudogene	pseudo
206032	chr7	26864001	26865600	+	0	NA	promoter-TSS (NM_003930)	promoter-TSS (NM_003930)	-210	NM_003930	8935		NM_003930	ENSG00000005020	SKAP2	PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R	src kinase associated phosphoprotein 2	protein-coding
3688	chr1	16512001	16512760	+	0	NA	Intergenic	Intergenic	1905	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
70654	chr14	102972801	102973000	+	0	NA	intron (NM_006035, intron 12 of 36)	intron (NM_006035, intron 12 of 36)	50237	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
208673	chr7	73214651	73214750	+	0	NA	Intergenic	Intergenic	-5939	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
129932	chr2	73739371	73739730	+	0	NA	Intergenic	MER70-int|LTR|ERVL	-2144	NM_001330387	51002		NM_016058	ENSG00000144034	TPRKB	CGI-121|CGI121|GAMOS5	TP53RK binding protein	protein-coding
180753	chr5	32129871	32130050	+	0	NA	intron (NM_022130, intron 3 of 3)	AluY|SINE|Alu	44359	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
64206	chr14	23048101	23048300	+	0	NA	exon (NM_022478, exon 13 of 14)	exon (NM_022478, exon 13 of 14)	5988	NM_001099780	122706		NM_001099780	ENSG00000222028	PSMB11	BETA5T	proteasome subunit beta 11	protein-coding
39828	chr11	62081601	62082700	+	0	NA	Intergenic	Intergenic	-41861	NM_020238	3619		NM_020238	ENSG00000149503	INCENP	-	inner centromere protein	protein-coding
79770	chr16	1367801	1368350	+	0	NA	intron (NR_163466, intron 2 of 4)	intron (NR_163466, intron 2 of 4)	11577	NM_001276414	64718		NM_024023	ENSG00000059145	UNKL	C16orf28|ZC3H5L|ZC3HDC5L	unk like zinc finger	protein-coding
128222	chr2	54053971	54054630	+	0	NA	intron (NM_001320586, intron 3 of 6)	intron (NM_001320586, intron 3 of 6)	-61315	NM_001320590	98		NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
143113	chr20	23399501	23400130	+	0	NA	intron (NM_001283018, intron 2 of 10)	intron (NM_001283018, intron 2 of 10)	21673	NR_104266	63908		NM_022080	ENSG00000125814	NAPB	DEE107|SNAP-BETA|SNAPB	NSF attachment protein beta	protein-coding
102221	chr17	75233971	75234330	+	0	NA	intron (NM_024844, intron 16 of 18)	AluSx|SINE|Alu	27456	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
103388	chr17	78148621	78149080	+	0	NA	intron (NM_001163075, intron 2 of 4)	L2a|LINE|L2	2465	NM_001163075	100141515		NM_001163075	ENSG00000187997	C17orf99	IL-40|UNQ464	chromosome 17 open reading frame 99	protein-coding
2087	chr1	7952801	7953000	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-8754	NM_001123377	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
131674	chr2	97708171	97708330	+	0	NA	Intergenic	Intergenic	-5326	NM_001079	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
209445	chr7	76409351	76409450	+	0	NA	intron (NM_080744, intron 1 of 10)	intron (NM_080744, intron 1 of 10)	297	NM_080744	136853		NM_080744	ENSG00000146700	SSC4D	S4D-SRCRB|SRCRB-S4D|SRCRB4D	scavenger receptor cysteine rich family member with 4 domains	protein-coding
73490	chr15	43748151	43748900	+	0	NA	intron (NM_005313, intron 1 of 12)	intron (NM_005313, intron 1 of 12)	2087	NM_005313	2923		NM_005313	ENSG00000167004	PDIA3	ER60|ERp57|ERp60|ERp61|GRP57|GRP58|HEL-S-269|HEL-S-93n|HsT17083|P58|PI-PLC	protein disulfide isomerase family A member 3	protein-coding
68836	chr14	91279871	91280230	+	0	NA	intron (NM_001080414, intron 27 of 29)	intron (NM_001080414, intron 27 of 29)	-26170	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
39121	chr11	48108321	48108850	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	11803	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
106939	chr18	26550721	26550980	+	0	NA	intron (NM_001258222, intron 1 of 4)	CpG	-1036	NM_001258221	284252		NM_198991	ENSG00000134504	KCTD1	C18orf5	potassium channel tetramerization domain containing 1	protein-coding
236937	chrX	100409951	100410480	+	0	NA	promoter-TSS (NM_001105243)	promoter-TSS (NM_001105243)	58	NM_020766	57526		NM_020766	ENSG00000165194	PCDH19	DEE9|EFMR|EIEE9	protocadherin 19	protein-coding
175665	chr4	76955221	76955680	+	0	NA	intron (NM_018243, intron 1 of 9)	L2c|LINE|L2	5698	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
137645	chr2	197417671	197418130	+	0	NA	TTS (NM_001308824)	TTS (NM_001308824)	17128	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
54867	chr12	95551051	95551750	+	0	NA	promoter-TSS (NM_032147)	promoter-TSS (NM_032147)	76	NM_032147	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
142424	chr20	3902121	3902780	+	0	NA	intron (NM_001324191, intron 2 of 7)	AluSz|SINE|Alu	12634	NM_001324193	80025		NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding
53617	chr12	68150251	68150650	+	0	NA	Intergenic	L1MC4|LINE|L1	9290	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
73465	chr15	43492451	43493950	+	0	NA	promoter-TSS (NM_001141979)	promoter-TSS (NM_001141979)	-44	NM_001355001	7158		NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding
121923	chr19	48442371	48442530	+	0	NA	intron (NM_000836, intron 13 of 13)	intron (NM_000836, intron 13 of 13)	-3533	NM_031485	83743		NM_031485	ENSG00000105447	GRWD1	CDW4|GRWD|RRB1|WDR28	glutamate rich WD repeat containing 1	protein-coding
160977	chr3	37178521	37178780	+	0	NA	Intergenic	AluJb|SINE|Alu	-2290	NM_001348298	9209		NM_006309	ENSG00000093167	LRRFIP2	HUFI-2	LRR binding FLII interacting protein 2	protein-coding
48443	chr12	9706151	9706780	+	0	NA	Intergenic	L1PA12|LINE|L1	26834	NM_001267701	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
115963	chr19	16893351	16894080	+	0	NA	non-coding (NR_147452, exon 3 of 3)	non-coding (NR_147452, exon 3 of 3)	3232	NR_147452	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
223740	chr8	144504151	144504850	+	0	NA	intron (NR_168477, intron 1 of 9)	intron (NR_168477, intron 1 of 9)	360	NR_168476	2875		NM_005309	ENSG00000167701	GPT	AAT1|ALT|ALT1|GPT1|SGPT	glutamic--pyruvic transaminase	protein-coding
91064	chr17	3012921	3013400	+	0	NA	intron (NM_001100398, intron 16 of 23)	intron (NM_001100398, intron 16 of 23)	-47265	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
148755	chr21	7919471	7919660	+	0	NA	Intergenic	(ATTCCATTCC)n|Simple_repeat|Simple_repeat	-89933	NM_001330065	102723475		NM_001330065	ENSG00000276289	LOC102723475	KCNE1B	potassium voltage-gated channel subfamily E regulatory subunit 1B	protein-coding
214579	chr7	150624021	150624280	+	0	NA	Intergenic	L1M5|LINE|L1	8235	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
181427	chr5	40824571	40824930	+	0	NA	TTS (NR_159993)	TTS (NR_159993)	7985	NR_002583	619564		NR_002583	ENSG00000212296	SNORD72	HBII-240	small nucleolar RNA, C/D box 72	snoRNA
210820	chr7	100884451	100885800	+	0	NA	intron (NM_001128854, intron 9 of 19)	intron (NM_001128854, intron 9 of 19)	4590	NM_001015072	402682		NM_001015072	ENSG00000176125	UFSP1	UFSP	UFM1 specific peptidase 1 (inactive)	protein-coding
28936	chr10	63206501	63206730	+	0	NA	exon (NM_001318154, exon 10 of 26)	exon (NM_001318154, exon 10 of 26)	62608	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
163026	chr3	49807071	49807230	+	0	NA	promoter-TSS (NR_049825)	promoter-TSS (NR_049825)	-905	NR_049825	100847079		NR_049825	ENSG00000283726	MIR5193	mir-5193	microRNA 5193	ncRNA
70333	chr14	101843001	101843200	+	0	NA	intron (NM_001352916, intron 2 of 13)	AluJo|SINE|Alu	33237	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
57230	chr12	121533651	121533750	+	0	NA	intron (NM_001005366, intron 7 of 22)	intron (NM_001005366, intron 7 of 22)	46546	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
232041	chr9	133419401	133419930	+	0	NA	intron (NR_024514, intron 1 of 17)	L2|LINE|L2	-1493	NM_001279351	57109		NM_020385	ENSG00000148300	REXO4	REX4|XPMC2|XPMC2H	REX4 homolog, 3'-5' exonuclease	protein-coding
76031	chr15	72197071	72198030	+	0	NA	intron (NM_001012642, intron 1 of 11)	CpG	237	NM_001012642	196996		NM_001012642	ENSG00000175318	GRAMD2A	GRAMD2	GRAM domain containing 2A	protein-coding
151906	chr22	18954301	18955000	+	0	NA	Intergenic	Intergenic	-15848	NR_045121	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
86216	chr16	58097051	58097750	+	0	NA	Intergenic	Intergenic	31981	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
87413	chr16	70663101	70663700	+	0	NA	3' UTR (NM_138383, exon 15 of 15)	3' UTR (NM_138383, exon 15 of 15)	22653	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
169716	chr3	172135321	172135580	+	0	NA	intron (NM_022763, intron 3 of 25)	intron (NM_022763, intron 3 of 25)	94919	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
93642	chr17	19179671	19180230	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-8066	NR_006880	780851		NR_006880		SNORD3A	RNU3|U3	small nucleolar RNA, C/D box 3A	snoRNA
75702	chr15	68045471	68045630	+	0	NA	Intergenic	MER52D|LTR|ERV1	-8765	NM_016166	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
51005	chr12	49670701	49672300	+	0	NA	intron (NM_175736, intron 1 of 25)	intron (NM_175736, intron 1 of 25)	35905	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
6097	chr1	27300521	27301350	+	0	NA	intron (NM_015023, intron 12 of 15)	intron (NM_015023, intron 12 of 15)	-21210	NM_032125	84065		NM_032125	ENSG00000186501	TMEM222	C1orf160|NEDMOSBA	transmembrane protein 222	protein-coding
150553	chr21	43088571	43089080	+	0	NA	Intergenic	Intergenic	-11882	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
128197	chr2	53961151	53961450	+	0	NA	intron (NM_014614, intron 1 of 46)	intron (NM_014614, intron 1 of 46)	9693	NM_014614	23198		NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding
198290	chr6	100099501	100099700	+	0	NA	Intergenic	Intergenic	-105362	NM_032503	84539		NM_032503	ENSG00000152034	MCHR2	GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT	melanin concentrating hormone receptor 2	protein-coding
207991	chr7	55472301	55473530	+	0	NA	exon (NM_001321247, exon 4 of 4)	exon (NM_001321247, exon 4 of 4)	53965	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
84754	chr16	30974721	30974980	+	0	NA	intron (NM_014712, intron 13 of 18)	AluSx1|SINE|Alu	-10357	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
151656	chr22	17036221	17036480	+	0	NA	promoter-TSS (NR_015352)	promoter-TSS (NR_015352)	-220	NR_015352	100130418		NR_015352		CECR7	CYCL|SAHL1	cat eye syndrome chromosome region, candidate 7	ncRNA
153867	chr22	30249301	30249900	+	0	NA	Intergenic	Intergenic	-2841	NM_002309	3976		NM_002309	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	LIF interleukin 6 family cytokine	protein-coding
52033	chr12	54002451	54002730	+	0	NA	exon (NM_006897, exon 2 of 2)	exon (NM_006897, exon 2 of 2)	2429	NM_006897	3225		NM_006897	ENSG00000180806	HOXC9	HOX3|HOX3B	homeobox C9	protein-coding
1123	chr1	2130421	2130680	+	0	NA	intron (NM_001033582, intron 1 of 14)	MLT2C1|LTR|ERVL	25834	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
36803	chr11	9601001	9602280	+	0	NA	Intergenic	Intergenic	26953	NM_001143976	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
33587	chr10	119507251	119507750	+	0	NA	intron (NM_002925, intron 4 of 4)	intron (NM_002925, intron 4 of 4)	29033	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
43519	chr11	81870951	81871050	+	0	NA	Intergenic	L3|LINE|CR1	19836	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA
143736	chr20	32351921	32352350	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-6196	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
161297	chr3	39361371	39362530	+	0	NA	Intergenic	L1PA10|LINE|L1	-21420	NM_001354798	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
200692	chr6	137271601	137271830	+	0	NA	Intergenic	MIR3|SINE|MIR	-52330	NM_000416	3459		NM_000416	ENSG00000027697	IFNGR1	CD119|IFNGR|IMD27A|IMD27B	interferon gamma receptor 1	protein-coding
107141	chr18	35132051	35132150	+	0	NA	exon (NM_001256420, exon 5 of 6)	exon (NM_001256420, exon 5 of 6)	90687	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
229333	chr9	120902421	120902700	+	0	NA	3' UTR (NM_001190947, exon 6 of 6)	3' UTR (NM_001190947, exon 6 of 6)	-7664	NM_001286840	26147		NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding
176098	chr4	82990871	82991030	+	0	NA	intron (NM_001115007, intron 1 of 12)	LTR40a|LTR|ERVL	19873	NM_194282	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
98932	chr17	48624571	48625400	+	0	NA	intron (NM_024017, intron 1 of 1)	CpG	1373	NM_024017	3219		NM_024017	ENSG00000170689	HOXB9	HOX-2.5|HOX2|HOX2E	homeobox B9	protein-coding
75348	chr15	65488851	65489600	+	0	NA	intron (NM_197961, intron 7 of 19)	AluSc8|SINE|Alu	28049	NR_135486	54878		NM_017743	ENSG00000074603	DPP8	DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141	dipeptidyl peptidase 8	protein-coding
219053	chr8	65791571	65791730	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	-2593	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
32548	chr10	103276801	103277100	+	0	NA	promoter-TSS (NM_032727)	promoter-TSS (NM_032727)	-188	NM_032727	9118		NM_032727	ENSG00000148798	INA	NEF5|NF-66|NF66|TXBP-1	internexin neuronal intermediate filament protein alpha	protein-coding
106751	chr18	23577271	23577900	+	0	NA	intron (NM_000271, intron 1 of 24)	LTR12C|LTR|ERV1	8921	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
17537	chr1	156786801	156787000	+	0	NA	exon (NM_005973, exon 3 of 7)	exon (NM_005973, exon 3 of 7)	19365	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
203218	chr6	168281571	168281730	+	0	NA	Intergenic	CpG	38127	NM_001286351	168002		NM_214462	ENSG00000164488	DACT2	C6orf116|DAPPER2|DPR2|bA503C24.7	dishevelled binding antagonist of beta catenin 2	protein-coding
27360	chr10	30726651	30727300	+	0	NA	Intergenic	Intergenic	3756	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
23646	chr1	230870821	230871300	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-1469	NM_001136494	84886		NM_032800	ENSG00000119280	C1orf198	-	chromosome 1 open reading frame 198	protein-coding
167486	chr3	129164651	129164850	+	0	NA	Intergenic	L1MC5a|LINE|L1	-3520	NM_001204890	100534599		NM_001204890	ENSG00000261796	ISY1-RAB43	ISY1	ISY1-RAB43 readthrough	protein-coding
136278	chr2	174699621	174700430	+	0	NA	Intergenic	AluJo|SINE|Alu	-17112	NM_001375835	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
228947	chr9	113380621	113381280	+	0	NA	Intergenic	L2b|LINE|L2	-3964	NM_001371923	81932		NM_031219	ENSG00000119431	HDHD3	2810435D12Rik|C9orf158	haloacid dehalogenase like hydrolase domain containing 3	protein-coding
144256	chr20	34536751	34537700	+	0	NA	intron (NM_001382366, intron 3 of 3)	intron (NM_001382366, intron 3 of 3)	-9619	NM_181509	84557		NM_032514	ENSG00000101460	MAP1LC3A	ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3	microtubule associated protein 1 light chain 3 alpha	protein-coding
195422	chr6	36911901	36913780	+	0	NA	intron (NM_152734, intron 3 of 7)	intron (NM_152734, intron 3 of 7)	26888	NM_152734	221477		NM_152734	ENSG00000198663	C6orf89	BRAP|PS1TP5TP1	chromosome 6 open reading frame 89	protein-coding
9924	chr1	54471971	54472130	+	0	NA	Intergenic	MIRb|SINE|MIR	-65656	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
88985	chr16	87909001	87909730	+	0	NA	intron (NM_001739, intron 2 of 6)	intron (NM_001739, intron 2 of 6)	27164	NM_001367225	763		NM_001739	ENSG00000174990	CA5A	CA5|CA5AD|CAV|CAVA|GS1-21A4.1	carbonic anhydrase 5A	protein-coding
25040	chr10	3766421	3767000	+	0	NA	Intergenic	Intergenic	18499	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
6407	chr1	27979571	27979930	+	0	NA	intron (NM_001282560, intron 15 of 16)	intron (NM_001282560, intron 15 of 16)	19777	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
4209	chr1	19454601	19455230	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	29380	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
112374	chr19	6022001	6022980	+	0	NA	intron (NM_134433, intron 5 of 16)	intron (NM_134433, intron 5 of 16)	44087	NR_046376	100128568		NR_046376	ENSG00000266983	RANBP3-DT	-	RANBP3 divergent transcript	ncRNA
34872	chr11	357801	358530	+	0	NA	Intergenic	L1MC3|LINE|L1	-11334	NM_178537	338707		NM_178537	ENSG00000182272	B4GALNT4	-	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein-coding
77068	chr15	78887851	78888150	+	0	NA	intron (NM_206839, intron 6 of 12)	AluSq|SINE|Alu	15011	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
218125	chr8	41574821	41575080	+	0	NA	intron (NR_125824, intron 1 of 2)	AluSx|SINE|Alu	-3250	NM_178819	137964		NM_178819	ENSG00000158669	GPAT4	1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7	glycerol-3-phosphate acyltransferase 4	protein-coding
215362	chr7	157391851	157392150	+	0	NA	intron (NM_058246, intron 8 of 9)	AluJb|SINE|Alu	54996	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
27395	chr10	31321281	31322080	+	0	NA	promoter-TSS (NM_001323673)	promoter-TSS (NM_001323673)	20	NM_001323671	6935		NM_030751	ENSG00000148516	ZEB1	AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A	zinc finger E-box binding homeobox 1	protein-coding
190542	chr5	180717971	180718130	+	0	NA	Intergenic	Intergenic	22008	NM_001001657	134083		NM_001001657	ENSG00000174339	OR2Y1	OR5-2	olfactory receptor family 2 subfamily Y member 1	protein-coding
221322	chr8	123060701	123061000	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-11857	NM_001363152	93594		NM_145647	ENSG00000156787	TBC1D31	Gm85|WDR67	TBC1 domain family member 31	protein-coding
15024	chr1	148329501	148329700	+	0	NA	Intergenic	Intergenic	4954	NR_049810	100847044		NR_049810	ENSG00000283676	MIR5087	-	microRNA 5087	ncRNA
201694	chr6	149609701	149609900	+	0	NA	intron (NM_007044, intron 4 of 10)	AluSg|SINE|Alu	16184	NR_077247	645958		NR_077247		RPS18P9	RPS18_6_767	ribosomal protein S18 pseudogene 9	pseudo
84046	chr16	29574671	29575300	+	0	NA	intron (NR_135305, intron 1 of 13)	AluSx1|SINE|Alu	20107	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
75506	chr15	66402801	66403090	+	0	NA	intron (NM_002755, intron 1 of 10)	intron (NM_002755, intron 1 of 10)	16033	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
81071	chr16	4336971	4337300	+	0	NA	exon (NM_032575, exon 7 of 7).2	exon (NM_032575, exon 7 of 7).2	-8795	NR_110901	101926896		NR_110901	ENSG00000262686	GLIS2-AS1	-	GLIS2 antisense RNA 1	ncRNA
97644	chr17	44195671	44195830	+	0	NA	intron (NM_001382309, intron 8 of 12)	intron (NM_001382309, intron 8 of 12)	3619	NM_001382315	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
85079	chr16	32915551	32915650	+	0	NA	Intergenic	Intergenic	-30458	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
45807	chr11	119343721	119344350	+	0	NA	intron (NM_031433, intron 8 of 14)	intron (NM_031433, intron 8 of 14)	2670	NM_031433	83552		NM_031433	ENSG00000235718	MFRP	CTRP5|MCOP5|NNO2|RD6	membrane frizzled-related protein	protein-coding
78523	chr15	92947371	92947780	+	0	NA	intron (NM_001042572, intron 12 of 12)	intron (NM_001042572, intron 12 of 12)	43176	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
146193	chr20	48766921	48767930	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	60574	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138693	chr2	213089001	213089200	+	0	NA	intron (NM_001371277, intron 3 of 6)	L2a|LINE|L2	61337	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
197575	chr6	79813901	79814180	+	0	NA	Intergenic	Intergenic	-1794	NR_131786	89758		NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
157187	chr22	43080671	43080830	+	0	NA	intron (NR_027779, intron 1 of 11)	L2b|LINE|L2	8641	NM_012263	25809		NM_012263	ENSG00000100271	TTLL1	C22orf7|HS323M22B|TPGS3	TTL family tubulin polyglutamylase complex subunit L1	protein-coding
205880	chr7	25102051	25102550	+	0	NA	Intergenic	Intergenic	22960	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
30863	chr10	86708051	86708730	+	0	NA	intron (NM_001368066, intron 9 of 14)	Tigger19b|DNA|TcMar-Tigger	39826	NM_001080116	11155		NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
32306	chr10	102149901	102150730	+	0	NA	TTS (NM_001288727)	TTS (NM_001288727)	-1861	NM_001284388	9221		NM_004741	ENSG00000166197	NOLC1	NOPP130|NOPP140|NS5ATP13|P130|Srp40	nucleolar and coiled-body phosphoprotein 1	protein-coding
212293	chr7	123770321	123770980	+	0	NA	Intergenic	L2c|LINE|L2	20061	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
169512	chr3	170021021	170021430	+	0	NA	Intergenic	L2b|LINE|L2	-16770	NM_014373	26996		NM_014373	ENSG00000173890	GPR160	GPCR1|GPCR150	G protein-coupled receptor 160	protein-coding
53450	chr12	65209621	65209930	+	0	NA	intron (NM_001167614, intron 1 of 12)	intron (NM_001167614, intron 1 of 12)	40192	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
203120	chr6	166640221	166640780	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	-13249	NM_021135	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
103626	chr17	78741501	78741730	+	0	NA	intron (NM_017456, intron 1 of 12)	LTR33|LTR|ERVL	-4713	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
216109	chr8	11198871	11199550	+	0	NA	intron (NR_138152, intron 1 of 3)	intron (NR_138152, intron 1 of 3)	2156	NR_138152	286046		NM_173683	ENSG00000171044	XKR6	C8orf21|C8orf5|C8orf7|XRG6	XK related 6	protein-coding
214597	chr7	150670821	150671080	+	0	NA	Intergenic	Intergenic	-14756	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
191544	chr6	11525801	11526000	+	0	NA	Intergenic	Intergenic	-11849	NM_001100829	100113407		NM_001100829	ENSG00000205269	TMEM170B	-	transmembrane protein 170B	protein-coding
160999	chr3	37264871	37265230	+	0	NA	intron (NM_002078, intron 2 of 23)	L1MD2|LINE|L1	-20855	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
137308	chr2	195663051	195663350	+	0	NA	intron (NM_020342, intron 1 of 9)	intron (NM_020342, intron 1 of 9)	5974	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
132480	chr2	105926601	105926800	+	0	NA	Intergenic	AluJr|SINE|Alu	74853	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
220324	chr8	98938021	98939000	+	0	NA	intron (NM_001256312, intron 1 of 12)	intron (NM_001256312, intron 1 of 12)	4100	NM_001256312	6788		NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
142209	chr20	3044071	3044700	+	0	NA	intron (NM_001310220, intron 1 of 3)	intron (NM_001310220, intron 1 of 3)	763	NM_178331	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
143532	chr20	31569171	31570200	+	0	NA	TTS (NM_030789)	TTS (NM_030789)	3578	NR_046853	100874042		NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
239086	chrY	10461721	10462180	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	551152	NR_001540	252955		NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis expressed transcript, Y-linked 23	ncRNA
186890	chr5	139564671	139564830	+	0	NA	intron (NM_181838, intron 2 of 7)	AluSx1|SINE|Alu	3411	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
197462	chr6	75266721	75267080	+	0	NA	intron (NM_001143958, intron 1 of 5)	intron (NM_001143958, intron 1 of 5)	-16602	NM_001366292	1347		NM_001865	ENSG00000112695	COX7A2	COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL	cytochrome c oxidase subunit 7A2	protein-coding
120043	chr19	41987971	41988130	+	0	NA	exon (NM_152296, exon 4 of 23)	exon (NM_152296, exon 4 of 23)	5417	NM_001256213	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
80946	chr16	3856501	3857250	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	23245	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
116438	chr19	18023171	18023330	+	0	NA	Intergenic	AluSx1|SINE|Alu	15080	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
50694	chr12	48905321	48905650	+	0	NA	intron (NM_033124, intron 2 of 7)	MIR3|SINE|MIR	1352	NM_001286957	85478		NM_033124	ENSG00000139537	CCDC65	CFAP250|DRC2|FAP250|NYD-SP28	coiled-coil domain containing 65	protein-coding
138794	chr2	216112021	216112680	+	0	NA	intron (NM_021141, intron 1 of 20)	L2c|LINE|L2	3002	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
122870	chr19	50498601	50498900	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	12441	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
214411	chr7	149817321	149817580	+	0	NA	intron (NR_163594, intron 74 of 102)	intron (NR_163594, intron 74 of 102)	-20925	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
37790	chr11	32438051	32438350	+	0	NA	non-coding (NR_120547, exon 3 of 3)	non-coding (NR_120547, exon 3 of 3)	2161	NR_120546	51352		NM_015855	ENSG00000183242	WT1-AS	WIT-1|WIT1|WT1-AS1|WT1AS	WT1 antisense RNA	ncRNA
206266	chr7	29343401	29343680	+	0	NA	intron (NM_001293070, intron 2 of 13)	L2|LINE|L2	-134570	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
22201	chr1	212453051	212453150	+	0	NA	Intergenic	Intergenic	20180	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
58382	chr12	131830101	131830630	+	0	NA	intron (NM_016155, intron 1 of 9)	CpG	1972	NM_016155	4326		NM_016155	ENSG00000198598	MMP17	MMP-17|MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
122345	chr19	49231451	49232050	+	0	NA	Intergenic	L1MD2|LINE|L1	73958	NM_001321283	54795		NM_017636	ENSG00000130529	TRPM4	EKVP6|LTrpC4|PFHB1B|TRPM4B|hTRPM4	transient receptor potential cation channel subfamily M member 4	protein-coding
152089	chr22	19765401	19766180	+	0	NA	exon (NM_001379200, exon 5 of 7)	exon (NM_001379200, exon 5 of 7)	5012	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
201793	chr6	149984801	149985000	+	0	NA	Intergenic	Intergenic	20244	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
176232	chr4	86359971	86360350	+	0	NA	promoter-TSS (NM_001318069)	promoter-TSS (NM_001318069)	-107	NM_138982	5602		NM_002753	ENSG00000109339	MAPK10	JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
58518	chr12	132188891	132190830	+	0	NA	promoter-TSS (NR_146452)	promoter-TSS (NR_146452)	-165	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
124525	chr2	202651	202950	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	53540	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
217322	chr8	27454671	27454830	+	0	NA	intron (NM_173174, intron 35 of 35)	intron (NM_173174, intron 35 of 35)	21380	NR_106901	102465507		NR_106901	ENSG00000273836	MIR6842	hsa-mir-6842	microRNA 6842	ncRNA
55146	chr12	98653671	98654230	+	0	NA	intron (NM_013229, intron 4 of 26)	intron (NM_013229, intron 4 of 26)	8650	NM_181869	317		NM_001160	ENSG00000120868	APAF1	APAF-1|CED4	apoptotic peptidase activating factor 1	protein-coding
54179	chr12	77064171	77064330	+	0	NA	intron (NM_203394, intron 2 of 12)	intron (NM_203394, intron 2 of 12)	1319	NM_203394	144455		NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding
190746	chr6	404801	405200	+	0	NA	intron (NR_046000, intron 7 of 9)	intron (NR_046000, intron 7 of 9)	13248	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
79934	chr16	1747621	1748000	+	0	NA	intron (NM_001318852, intron 6 of 31)	intron (NM_001318852, intron 6 of 31)	12825	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
37765	chr11	32097951	32098450	+	0	NA	intron (NM_002901, intron 2 of 5)	intron (NM_002901, intron 2 of 5)	7126	NM_002901	5954		NM_002901	ENSG00000049449	RCN1	HEL-S-84|PIG20|RCAL|RCN	reticulocalbin 1	protein-coding
86524	chr16	67157971	67159300	+	0	NA	intron (NM_003789, intron 1 of 4)	HAL1b|LINE|L1	1274	NM_003789	8717		NM_003789	ENSG00000102871	TRADD	Hs.89862	TNFRSF1A associated via death domain	protein-coding
195657	chr6	37937651	37937750	+	0	NA	intron (NM_021943, intron 2 of 5)	intron (NM_021943, intron 2 of 5)	117973	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
152383	chr22	20522001	20522200	+	0	NA	intron (NM_001293237, intron 1 of 16)	L1ME3|LINE|L1	14053	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
69794	chr14	99195121	99195750	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	76762	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
16579	chr1	155011251	155011350	+	0	NA	intron (NM_001377451, intron 4 of 5)	intron (NM_001377451, intron 4 of 5)	8498	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
173018	chr4	4459321	4459400	+	0	NA	intron (NM_016930, intron 3 of 10)	intron (NM_016930, intron 3 of 10)	2612	NM_001346300	53407		NM_016930	ENSG00000168818	STX18	Ufe1	syntaxin 18	protein-coding
71648	chr14	106790451	106790930	+	0	NA	Intergenic	Intergenic	60309	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
130672	chr2	86371601	86371800	+	0	NA	Intergenic	Intergenic	-33617	NM_001164730	65055		NM_022912	ENSG00000068615	REEP1	C2orf23|DSMA6|HMN5B|HMND12|HMNR6|SPG31|Yip2a	receptor accessory protein 1	protein-coding
161279	chr3	39288371	39289380	+	0	NA	Intergenic	MIRb|SINE|MIR	-7140	NM_001171174	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
225256	chr9	34337471	34338130	+	0	NA	intron (NM_147172, intron 2 of 4)	FLAM_A|SINE|Alu	8231	NM_001161	318		NM_001161	ENSG00000164978	NUDT2	APAH1|IDDPN	nudix hydrolase 2	protein-coding
17948	chr1	160376371	160376950	+	0	NA	Intergenic	Intergenic	9589	NM_005598	4807		NM_005598	ENSG00000171786	NHLH1	HEN1|NSCL|NSCL1|bHLHa35	nescient helix-loop-helix 1	protein-coding
206298	chr7	30141271	30141700	+	0	NA	intron (NM_152793, intron 1 of 2)	intron (NM_152793, intron 1 of 2)	6499	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
32937	chr10	110306121	110306750	+	0	NA	Intergenic	Intergenic	-1515	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
63474	chr13	114149901	114151280	+	0	NA	Intergenic	Intergenic	-17967	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
150085	chr21	37410521	37410830	+	0	NA	intron (NM_101395, intron 2 of 12)	AluJr|SINE|Alu	-8230	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
127721	chr2	43439051	43439150	+	0	NA	intron (NR_144316, intron 26 of 36)	MER44D|DNA|TcMar-Tigger	156874	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
120349	chr19	43581871	43582250	+	0	NA	TTS (NM_001321124)	TTS (NM_001321124)	1454	NM_001321124	390940		NM_001193621	ENSG00000234465	PINLYP	-	phospholipase A2 inhibitor and LY6/PLAUR domain containing	protein-coding
179728	chr5	191221	192530	+	0	NA	exon (NM_001080478, exon 1 of 2)	exon (NM_001080478, exon 1 of 2)	380	NM_001080478	389257		NM_001080478	ENSG00000185028	LRRC14B	-	leucine rich repeat containing 14B	protein-coding
195907	chr6	41730401	41731180	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	2820	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
175350	chr4	69661201	69661480	+	0	NA	Intergenic	L1P2|LINE|L1	-8093	NM_001252274	10941		NM_006798	ENSG00000173610	UGT2A1	UDPGT2A1	UDP glucuronosyltransferase family 2 member A1 complex locus	protein-coding
124847	chr2	7767721	7768180	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	131705	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
4035	chr1	18946671	18947330	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	9676	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
119813	chr19	41343551	41344450	+	0	NA	intron (NM_000660, intron 3 of 6)	AluJb|SINE|Alu	9922	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
38688	chr11	46563171	46563330	+	0	NA	intron (NM_001367471, intron 1 of 18)	intron (NM_001367471, intron 1 of 18)	24194	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
159893	chr3	16895701	16895900	+	0	NA	intron (NM_001144382, intron 1 of 5)	L1ME3A|LINE|L1	10845	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
90600	chr17	1622051	1622550	+	0	NA	intron (NM_152346, intron 2 of 13).2	AluY|SINE|Alu	6116	NM_001321365	124935		NM_152346	ENSG00000167703	SLC43A2	LAT4	solute carrier family 43 member 2	protein-coding
109205	chr19	457971	458130	+	0	NA	intron (NM_012435, intron 1 of 12)	CpG	2946	NM_012435	25759		NM_012435	ENSG00000129946	SHC2	SCK|SHCB|SLI	SHC adaptor protein 2	protein-coding
42218	chr11	68036771	68037680	+	0	NA	TTS (NM_002496)	TTS (NM_002496)	-1800	NM_006019	10312		NM_006019	ENSG00000110719	TCIRG1	ATP6N1C|ATP6V0A3|Atp6i|OC-116kDa|OC116|OPTB1|Stv1|TIRC7|Vph1|a3	T cell immune regulator 1, ATPase H+ transporting V0 subunit a3	protein-coding
188203	chr5	150690901	150691100	+	0	NA	3' UTR (NM_018047, exon 11 of 11)	3' UTR (NM_018047, exon 11 of 11)	10062	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
26344	chr10	15229671	15229830	+	0	NA	intron (NM_001010924, intron 5 of 7)	intron (NM_001010924, intron 5 of 7)	-61057	NM_001308295	9397		NM_004808	ENSG00000152465	NMT2	-	N-myristoyltransferase 2	protein-coding
102433	chr17	75673401	75673600	+	0	NA	intron (NR_126036, intron 3 of 9)	intron (NR_126036, intron 3 of 9)	6162	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
185288	chr5	126490601	126490800	+	0	NA	intron (NR_146195, intron 15 of 15)	intron (NR_146195, intron 15 of 15)	25550	NM_001146322	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
25117	chr10	3976701	3977180	+	0	NA	Intergenic	L2a|LINE|L2	-14220	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
33249	chr10	114471251	114472480	+	0	NA	intron (NM_001322889, intron 6 of 16)	intron (NM_001322889, intron 6 of 16)	55048	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
17771	chr1	159056971	159057330	+	0	NA	Intergenic	MER61-int|LTR|ERV1	19616	NM_004833	9447		NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding
189191	chr5	171421701	171422080	+	0	NA	intron (NM_003862, intron 2 of 4)	intron (NM_003862, intron 2 of 4)	2243	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
181652	chr5	50398451	50398550	+	0	NA	3' UTR (NM_198449, exon 9 of 9)	3' UTR (NM_198449, exon 9 of 9)	42788	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
29213	chr10	68991651	68992530	+	0	NA	intron (NM_015634, intron 1 of 6)	AluJb|SINE|Alu	3287	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
194771	chr6	34132551	34132850	+	0	NA	intron (NM_001256809, intron 1 of 8)	intron (NM_001256809, intron 1 of 8)	13387	NM_000841	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
219585	chr8	79770921	79771180	+	0	NA	intron (NR_110954, intron 5 of 5)	intron (NR_110954, intron 5 of 5)	2908	NR_125410	101927067		NR_125410	ENSG00000272138	LINC01607	-	long intergenic non-protein coding RNA 1607	ncRNA
235833	chrX	49327551	49327650	+	0	NA	intron (NM_001098406, intron 4 of 4)	intron (NM_001098406, intron 4 of 4)	-3982	NM_001098407	729408		NM_001098407		GAGE2D	CT4.8|GAGE-2D|GAGE-8|GAGE8	G antigen 2D	protein-coding
128179	chr2	53784271	53784730	+	0	NA	intron (NM_001164165, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	-2431	NM_001127398	27248		NM_015701	ENSG00000068912	ERLEC1	C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB	endoplasmic reticulum lectin 1	protein-coding
32455	chr10	102636771	102637030	+	0	NA	Intergenic	L2a|LINE|L2	-7579	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
160124	chr3	19982371	19982730	+	0	NA	intron (NR_027694, intron 3 of 3)	intron (NR_027694, intron 3 of 3)	29714	NM_001252657	151649		NM_144714	ENSG00000183977	PP2D1	C3orf48	protein phosphatase 2C like domain containing 1	protein-coding
117923	chr19	33077851	33078150	+	0	NA	Intergenic	AluJo|SINE|Alu	-2880	NR_135270	55094		NM_018025	ENSG00000076650	GPATCH1	ECGP|GPATC1	G-patch domain containing 1	protein-coding
88059	chr16	81459171	81459330	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	14080	NM_198390	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
116867	chr19	18642201	18642400	+	0	NA	intron (NM_001345984, intron 1 of 3)	intron (NM_001345984, intron 1 of 3)	-2338	NM_001345983	55295		NM_018316	ENSG00000167487	KLHL26	-	kelch like family member 26	protein-coding
162995	chr3	49725601	49725800	+	0	NA	3' UTR (NM_001006115, exon 5 of 5)	3' UTR (NM_001006115, exon 5 of 5)	-1726	NM_013334	29925		NM_013334	ENSG00000173540	GMPPB	LGMDR19|MDDGA14|MDDGB14|MDDGC14	GDP-mannose pyrophosphorylase B	protein-coding
177625	chr4	121181501	121181780	+	0	NA	intron (NM_001128843, intron 3 of 12)	(GT)n|Simple_repeat|Simple_repeat	-17319	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
146342	chr20	49242621	49242880	+	0	NA	intron (NM_017895, intron 19 of 20)	AluYm1|SINE|Alu	23334	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
140205	chr2	231703401	231703800	+	0	NA	Intergenic	AluJb|SINE|Alu	-4925	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
46221	chr11	124071101	124071600	+	0	NA	Intergenic	Intergenic	-32349	NM_001004463	390265		NM_001004463	ENSG00000182634	OR10G7	OR11-283	olfactory receptor family 10 subfamily G member 7	protein-coding
181902	chr5	54620221	54620680	+	0	NA	Intergenic	Intergenic	82874	NR_104659	102467080		NR_104658		LINC02998	-	long intergenic non-protein coding RNA 2998	ncRNA
137971	chr2	201189201	201189400	+	0	NA	intron (NM_001230, intron 3 of 7)	AluSz|SINE|Alu	6159	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
39974	chr11	62596671	62597230	+	0	NA	intron (NM_001330292, intron 8 of 17)	AluY|SINE|Alu	4300	NM_001330292	9219		NM_004739	ENSG00000149480	MTA2	MTA1L1|PID	metastasis associated 1 family member 2	protein-coding
171140	chr3	195552551	195552650	+	0	NA	Intergenic	AluSx|SINE|Alu	-9275	NR_133014	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
205752	chr7	23510901	23511430	+	0	NA	intron (NM_001362759, intron 3 of 6)	AluY|SINE|Alu	20777	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
181535	chr5	43069771	43070230	+	0	NA	intron (NR_102752, intron 2 of 2)	AluY|SINE|Alu	-2561	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
17251	chr1	156367251	156367750	+	0	NA	Intergenic	Intergenic	-1711	NM_020407	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
151869	chr22	18657401	18657880	+	0	NA	Intergenic	L1M3c|LINE|L1	-45721	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
24596	chr1	246002951	246003380	+	0	NA	intron (NM_001375963, intron 5 of 11)	intron (NM_001375963, intron 5 of 11)	-14614	NM_001375966	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
190779	chr6	548401	548830	+	0	NA	intron (NM_018303, intron 22 of 27)	intron (NM_018303, intron 22 of 27)	108349	NM_148959	135458		NM_148959	ENSG00000188996	HUS1B	-	HUS1 checkpoint clamp component B	protein-coding
44737	chr11	111935571	111935730	+	0	NA	intron (NM_001278542, intron 2 of 5)	intron (NM_001278542, intron 2 of 5)	-1693	NM_001037954	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
94261	chr17	28693571	28694300	+	0	NA	intron (NM_003170, intron 28 of 36)	intron (NM_003170, intron 28 of 36)	16169	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
209835	chr7	89357271	89357430	+	0	NA	Intergenic	Intergenic	-561613	NM_152706	219557		NM_152706	ENSG00000164645	TEX47	C7orf62|DYBLUF	testis expressed 47	protein-coding
98430	chr17	46817171	46817600	+	0	NA	intron (NM_030753, intron 1 of 4)	intron (NM_030753, intron 1 of 4)	1307	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
34362	chr10	132227621	132227880	+	0	NA	intron (NM_173575, intron 3 of 11)	intron (NM_173575, intron 3 of 11)	21358	NR_134911	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
99204	chr17	49553971	49554330	+	0	NA	intron (NR_103773, intron 1 of 2)	intron (NR_103773, intron 1 of 2)	19914	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
236630	chrX	74603951	74604250	+	0	NA	intron (NM_016120, intron 1 of 3)	AluSg|SINE|Alu	10524	NM_016120	51132		NM_016120	ENSG00000131263	RLIM	MRX61|NY-REN-43|RNF12|TOKAS	ring finger protein, LIM domain interacting	protein-coding
182187	chr5	56803951	56804250	+	0	NA	Intergenic	Intergenic	-11449	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
228968	chr9	113516671	113517770	+	0	NA	intron (NM_144488, intron 16 of 25)	intron (NM_144488, intron 16 of 25)	15713	NM_130795	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
116361	chr19	17875471	17875650	+	0	NA	intron (NM_000453, intron 4 of 14)	AluJr|SINE|Alu	3615	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
76945	chr15	78093001	78093200	+	0	NA	intron (NM_001101404, intron 1 of 5)	MER94|DNA|hAT-Blackjack	515	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
22886	chr1	225839451	225839750	+	0	NA	intron (NR_165627, intron 5 of 8)	intron (NR_165627, intron 5 of 8)	14246	NR_165627	2052		NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding
136136	chr2	174048371	174048550	+	0	NA	Intergenic	Intergenic	23180	NR_136175	100128905		NR_136175	ENSG00000260868	LINC01960	-	long intergenic non-protein coding RNA 1960	ncRNA
148636	chr21	5874101	5874300	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	99190	NM_017445	54145		NM_017445	ENSG00000234289	H2BC12L	H2B/s|H2BFS|H2BS1	H2B clustered histone 12 like	protein-coding
160670	chr3	32114121	32115730	+	0	NA	intron (NM_015141, intron 1 of 7)	LTR12|LTR|ERV1	8305	NM_015141	23171		NM_015141	ENSG00000152642	GPD1L	GPD1-L	glycerol-3-phosphate dehydrogenase 1 like	protein-coding
115514	chr19	15426571	15426730	+	0	NA	intron (NM_001371589, intron 9 of 12)	intron (NM_001371589, intron 9 of 12)	6111	NM_001330395	58525		NM_021241	ENSG00000011451	WIZ	ZNF803	WIZ zinc finger	protein-coding
72624	chr15	38254271	38254700	+	0	NA	intron (NM_152594, intron 1 of 6)	intron (NM_152594, intron 1 of 6)	1649	NM_152594	161742		NM_152594	ENSG00000166068	SPRED1	LGSS|NFLS|PPP1R147|hSpred1|spred-1	sprouty related EVH1 domain containing 1	protein-coding
155594	chr22	38767271	38767630	+	0	NA	Intergenic	MIR|SINE|MIR	-11452	NM_015374	25777		NM_015374	ENSG00000100242	SUN2	UNC84B|rab5IP	Sad1 and UNC84 domain containing 2	protein-coding
183429	chr5	78404701	78404900	+	0	NA	intron (NM_004866, intron 2 of 8)	L1MC1|LINE|L1	44183	NM_004866	9522		NM_004866	ENSG00000085365	SCAMP1	SCAMP|SCAMP37	secretory carrier membrane protein 1	protein-coding
25319	chr10	6221851	6221950	+	0	NA	intron (NM_001145443, intron 10 of 14)	intron (NM_001145443, intron 10 of 14)	18968	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
48484	chr12	9797871	9798350	+	0	NA	Intergenic	Intergenic	-1942	NR_159359	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
21311	chr1	204510321	204510580	+	0	NA	Intergenic	AluY|SINE|Alu	-5929	NM_001204172	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
27870	chr10	41857271	41857700	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	510560	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
90479	chr17	1394171	1394330	+	0	NA	intron (NR_024058, intron 1 of 6)	MIR3|SINE|MIR	5972	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
138288	chr2	203712971	203713130	+	0	NA	intron (NM_001243078, intron 1 of 2)	MIR|SINE|MIR	6411	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
122521	chr19	49619071	49619630	+	0	NA	intron (NM_020719, intron 9 of 13)	AluSp|SINE|Alu	20793	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
108522	chr18	74353151	74353480	+	0	NA	exon (NM_001174123, exon 12 of 14)	exon (NM_001174123, exon 12 of 14)	37476	NM_001174123	644041		NM_001174123	ENSG00000206043	C18orf63	DKFZP781G0119	chromosome 18 open reading frame 63	protein-coding
94592	chr17	29723571	29724480	+	0	NA	intron (NM_033389, intron 2 of 14)	intron (NM_033389, intron 2 of 14)	37407	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
153848	chr22	30178271	30178920	+	0	NA	Intergenic	Intergenic	-60599	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
82835	chr16	21500901	21501800	+	0	NA	promoter-TSS (NR_027460).2	promoter-TSS (NR_027460).2	-176	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
83355	chr16	25059421	25059880	+	0	NA	Intergenic	AluY|SINE|Alu	-7237	NR_135196	283887		NR_135196	ENSG00000262155	LINC02175	-	long intergenic non-protein coding RNA 2175	ncRNA
135203	chr2	159090851	159091150	+	0	NA	non-coding (NR_146421, exon 4 of 4)	non-coding (NR_146421, exon 4 of 4)	-95835	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
15394	chr1	150225551	150225650	+	0	NA	intron (NM_001280559, intron 5 of 6)	AluSz|SINE|Alu	9078	NM_001136479	81611		NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding
66553	chr14	62097771	62098230	+	0	NA	intron (NM_001367652, intron 6 of 6)	intron (NM_001367652, intron 6 of 6)	-19357	NR_015358	646113		NM_001039785		LINC00643	-	long intergenic non-protein coding RNA 643	ncRNA
212688	chr7	129664421	129664680	+	0	NA	intron (NM_001293164, intron 2 of 9)	intron (NM_001293164, intron 2 of 9)	34472	NM_001040110	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
81803	chr16	11544851	11545680	+	0	NA	Intergenic	L1MB5|LINE|L1	-18018	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
71426	chr14	105590271	105591180	+	0	NA	Intergenic	(CCAGC)n|Simple_repeat|Simple_repeat	-30391	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA
57954	chr12	123751201	123751400	+	0	NA	intron (NM_012463, intron 16 of 19)	intron (NM_012463, intron 16 of 19)	-11001	NM_001372106	196385		NM_207437	ENSG00000197653	DNAH10	SPGF56	dynein axonemal heavy chain 10	protein-coding
187089	chr5	140251151	140251830	+	0	NA	intron (NM_002622, intron 3 of 3)	intron (NM_002622, intron 3 of 3)	51611	NM_002622	5201		NM_002622	ENSG00000113068	PFDN1	PDF|PFD1	prefoldin subunit 1	protein-coding
131218	chr2	95079951	95080700	+	0	NA	Intergenic	AluY|SINE|Alu	41232	NM_001321997	64969		NM_031902	ENSG00000144029	MRPS5	MRP-S5|S5mt|uS5m	mitochondrial ribosomal protein S5	protein-coding
92882	chr17	16431351	16431650	+	0	NA	intron (NM_016113, intron 10 of 14)	AluSx|SINE|Alu	-7487	NR_027170	125144		NM_152350	ENSG00000175061	SNHG29	C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19	small nucleolar RNA host gene 29	ncRNA
247	chr1	909771	910630	+	0	NA	Intergenic	CpG	9492	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
124341	chr19	58309671	58309830	+	0	NA	intron (NR_144445, intron 2 of 3)	HERVK3-int|LTR|ERVK	4376	NR_144445	105372481		NM_001396080	ENSG00000142396	ERVK3-1	-	endogenous retrovirus group K3 member 1	protein-coding
63732	chr14	21217321	21217630	+	0	NA	intron (NM_001077443, intron 4 of 7)	intron (NM_001077443, intron 4 of 7)	-10575	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
31216	chr10	91409351	91410950	+	0	NA	promoter-TSS (NR_104291)	promoter-TSS (NR_104291)	-135	NR_145526	143279		NM_173497	ENSG00000165338	HECTD2	-	HECT domain E3 ubiquitin protein ligase 2	protein-coding
163299	chr3	50340001	50342000	+	0	NA	promoter-TSS (NM_001206957)	promoter-TSS (NM_001206957)	-64	NM_001206957	11186		NM_007182	ENSG00000068028	RASSF1	123F2|NORE2A|RASSF1A|RDA32|REH3P21	Ras association domain family member 1	protein-coding
212415	chr7	128169521	128169780	+	0	NA	Intergenic	Intergenic	-38222	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
206784	chr7	36735071	36735650	+	0	NA	Intergenic	Intergenic	-10811	NM_001177507	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
162482	chr3	48560371	48560530	+	0	NA	intron (NM_001317136, intron 1 of 13)	intron (NM_001317136, intron 1 of 13)	679	NM_001317136	5210		NM_004567	ENSG00000114268	PFKFB4	-	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding
73823	chr15	49036871	49037500	+	0	NA	intron (NM_001193489, intron 2 of 17)	intron (NM_001193489, intron 2 of 17)	9261	NM_014701	9728		NM_014701	ENSG00000138593	SECISBP2L	SBP2L|SLAN	SECIS binding protein 2 like	protein-coding
214742	chr7	151052971	151053330	+	0	NA	TTS (NM_001164410)	TTS (NM_001164410)	4619	NM_004769	9311		NM_004769	ENSG00000213199	ASIC3	ACCN3|DRASIC|SLNAC1|TNaC1	acid sensing ion channel subunit 3	protein-coding
185693	chr5	131973971	131974130	+	0	NA	intron (NM_001205250, intron 11 of 20)	MIRb|SINE|MIR	-28387	NM_001303622	728637		NM_001278059	ENSG00000239642	MEIKIN	SPO13	meiotic kinetochore factor	protein-coding
73992	chr15	52027121	52027980	+	0	NA	intron (NM_002748, intron 1 of 5)	intron (NM_002748, intron 1 of 5)	8331	NM_002748	5597		NM_002748	ENSG00000069956	MAPK6	ERK3|HsT17250|PRKM6|p97MAPK	mitogen-activated protein kinase 6	protein-coding
41742	chr11	66675871	66676230	+	0	NA	intron (NM_031492, intron 2 of 3)	intron (NM_031492, intron 2 of 3)	1837	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
143655	chr20	31873901	31874500	+	0	NA	intron (NR_148013, intron 2 of 16)	intron (NR_148013, intron 2 of 16)	-3456	NM_080611	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
228640	chr9	106420751	106420850	+	0	NA	Intergenic	Intergenic	-180128	NR_107048	102465995		NR_107048	ENSG00000277889	MIR8081	hsa-mir-8081	microRNA 8081	ncRNA
54377	chr12	89824901	89825100	+	0	NA	Intergenic	L1M6|LINE|L1	-115634	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
29335	chr10	69410351	69411200	+	0	NA	intron (NM_001057, intron 2 of 4)	LTR47B2|LTR|ERVL	6143	NM_001057	6865		NM_001057	ENSG00000075073	TACR2	NK2R|NKNAR|SKR|TAC2R	tachykinin receptor 2	protein-coding
128146	chr2	48395671	48396050	+	0	NA	Intergenic	L2a|LINE|L2	-44906	NM_001135629	129285		NM_152994	ENSG00000162869	PPP1R21	CCDC128|FERRY2|Fy-2|KLRAQ1|NEDHFBA	protein phosphatase 1 regulatory subunit 21	protein-coding
136713	chr2	181166801	181167030	+	0	NA	intron (NR_130784, intron 1 of 4)	THE1B-int|LTR|ERVL-MaLR	43078	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
14905	chr1	147098371	147098530	+	0	NA	Intergenic	LTR13|LTR|ERVK	-13694	NR_121645	101447996		NR_121645	ENSG00000286172	RNVU1-8	RNU1-145|vU1.8	RNA, variant U1 small nuclear 8	snRNA
2036	chr1	7703071	7703400	+	0	NA	intron (NM_001349613, intron 1 of 11)	L2c|LINE|L2	-1501	NM_001349622	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
139510	chr2	224551021	224551430	+	0	NA	intron (NM_001257197, intron 1 of 14)	AluY|SINE|Alu	18730	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
203773	chr7	1227471	1227830	+	0	NA	Intergenic	Intergenic	-5222	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
40293	chr11	63862771	63863530	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	24040	NM_004954	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
204486	chr7	4749501	4750100	+	0	NA	intron (NM_001037165, intron 2 of 8)	intron (NM_001037165, intron 2 of 8)	-25823	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
83406	chr16	27198021	27198280	+	0	NA	Intergenic	MER4A1_|LTR|ERV1	-5376	NM_024773	79831		NM_024773	ENSG00000155666	KDM8	JMJD5	lysine demethylase 8	protein-coding
187383	chr5	141873521	141874230	+	0	NA	intron (NM_032420, intron 1 of 4)	MIRb|SINE|MIR	-4248	NM_001278613	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
143905	chr20	32586451	32586830	+	0	NA	promoter-TSS (NR_034152)	promoter-TSS (NR_034152)	-839	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
18012	chr1	160562401	160562600	+	0	NA	intron (NM_001184882, intron 1 of 5)	L1PA11|LINE|L1	16996	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
210419	chr7	100053221	100053550	+	0	NA	intron (NM_001362780, intron 2 of 4)	intron (NM_001362780, intron 2 of 4)	3591	NM_001362780	7589		NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
195878	chr6	41625421	41625700	+	0	NA	Intergenic	Intergenic	-11458	NM_001300804	4188		NM_005586	ENSG00000112559	MDFI	I-MF|I-mfa	MyoD family inhibitor	protein-coding
19597	chr1	179744271	179744430	+	0	NA	intron (NM_001329719, intron 1 of 4)	CpG	1059	NM_001329717	148753		NM_173509	ENSG00000143340	FAM163A	C1orf76|NDSP	family with sequence similarity 163 member A	protein-coding
53111	chr12	57780771	57781680	+	0	NA	3' UTR (NM_015433, exon 3 of 3)	3' UTR (NM_015433, exon 3 of 3)	-1520	NM_001172697	10102		NM_005726	ENSG00000123297	TSFM	EFTS|EFTSMT	Ts translation elongation factor, mitochondrial	protein-coding
62986	chr13	112303121	112304200	+	0	NA	Intergenic	Intergenic	-9807	NR_135321	101928752		NR_135321	ENSG00000260343	LINC01043	-	long intergenic non-protein coding RNA 1043	ncRNA
73781	chr15	45637101	45638280	+	0	NA	intron (NM_021199, intron 1 of 9)	intron (NM_021199, intron 1 of 9)	2661	NM_021199	58472		NM_021199	ENSG00000137767	SQOR	CGI-44|PRO1975|SQR|SQRDL	sulfide quinone oxidoreductase	protein-coding
59265	chr13	24160321	24161630	+	0	NA	intron (NM_153023, intron 1 of 11)	CpG	255	NM_001166271	221178		NM_153023	ENSG00000182957	SPATA13	ARHGEF29|ASEF2	spermatogenesis associated 13	protein-coding
192775	chr6	26529321	26529850	+	0	NA	Intergenic	Intergenic	7879	NR_026790	493812		NR_026790	ENSG00000228223	HCG11	CTA-14H9.3|bK14H9.3	HLA complex group 11	ncRNA
3544	chr1	16124771	16125600	+	0	NA	3' UTR (NM_001329090, exon 16 of 16)	3' UTR (NM_001329090, exon 16 of 16)	30884	NM_001329090	1969		NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding
226762	chr9	76441551	76442230	+	0	NA	5' UTR (NM_001097634, exon 1 of 3)	5' UTR (NM_001097634, exon 1 of 3)	224	NM_001097634	2650		NM_001490	ENSG00000187210	GCNT1	C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2	glucosaminyl (N-acetyl) transferase 1	protein-coding
8188	chr1	39567951	39568750	+	0	NA	promoter-TSS (NR_002983)	promoter-TSS (NR_002983)	-840	NR_002983	677834		NR_002983	ENSG00000201457	SNORA55	ACA55	small nucleolar RNA, H/ACA box 55	snoRNA
141184	chr2	239293751	239294630	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-11272	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
39627	chr11	61434021	61434600	+	0	NA	intron (NM_017841, intron 1 of 3)	AluSx|SINE|Alu	4186	NM_017841	54949		NM_017841	ENSG00000167985	SDHAF2	C11orf79|PGL2|PPGL2|SDH5|hSDH5	succinate dehydrogenase complex assembly factor 2	protein-coding
164991	chr3	71337771	71338130	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-33179	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
185794	chr5	132419101	132420150	+	0	NA	intron (NR_161242, intron 1 of 3)	intron (NR_161242, intron 1 of 3)	8696	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
238318	chrX	149518301	149518500	+	0	NA	Intergenic	L1PA16|LINE|L1	-13094	NM_001166550	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
223518	chr8	144106101	144106700	+	0	NA	exon (NM_032272, exon 5 of 8)	exon (NM_032272, exon 5 of 8)	-1339	NM_001316309	340390		NM_032529	ENSG00000179698	WDR97	KIAA1875	WD repeat domain 97	protein-coding
206683	chr7	36473471	36473800	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-83278	NM_001100425	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
67970	chr14	74881101	74883130	+	0	NA	intron (NM_001244883, intron 1 of 6)	CpG	199	NM_001244883	1743		NM_001933	ENSG00000119689	DLST	DLTS|KGD2|PGL7|PPGL7	dihydrolipoamide S-succinyltransferase	protein-coding
41308	chr11	65880901	65881680	+	0	NA	intron (NM_001335, intron 2 of 9)	intron (NM_001335, intron 2 of 9)	1453	NM_001335	1521		NM_001335	ENSG00000172543	CTSW	LYPN	cathepsin W	protein-coding
230090	chr9	127555551	127556630	+	0	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	12983	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
120376	chr19	43633071	43633430	+	0	NA	intron (NM_145296, intron 1 of 8)	AluJo|SINE|Alu	6600	NM_145296	199731		NM_145296	ENSG00000105767	CADM4	IGSF4C|NECL4|Necl-4|TSLL2|synCAM4	cell adhesion molecule 4	protein-coding
59290	chr13	24258051	24258430	+	0	NA	intron (NM_153023, intron 3 of 11)	AluSq2|SINE|Alu	-3801	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
10005	chr1	55197151	55197450	+	0	NA	intron (NM_015306, intron 1 of 67)	L2a|LINE|L2	18064	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
151735	chr22	17773351	17774780	+	0	NA	promoter-TSS (NM_197966)	promoter-TSS (NM_197966)	-23	NM_001244572	637		NM_001196	ENSG00000015475	BID	FP497	BH3 interacting domain death agonist	protein-coding
215530	chr7	158771471	158772030	+	0	NA	intron (NM_020728, intron 7 of 21)	intron (NM_020728, intron 7 of 21)	57759	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
228996	chr9	113577501	113577700	+	0	NA	intron (NM_001351526, intron 2 of 8)	L2|LINE|L2	-3328	NM_001282922	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
105031	chr17	82054771	82055250	+	0	NA	intron (NM_001330539, intron 5 of 12)	intron (NM_001330539, intron 5 of 12)	3112	NM_212492	2873		NM_004127	ENSG00000169727	GPS1	COPS1|CSN1|SGN1	G protein pathway suppressor 1	protein-coding
54668	chr12	93383601	93383800	+	0	NA	intron (NM_001301023, intron 1 of 4)	AluSx|SINE|Alu	5122	NM_001301022	11163		NM_019094	ENSG00000173598	NUDT4	DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B	nudix hydrolase 4	protein-coding
72977	chr15	40582621	40583150	+	0	NA	Intergenic	MER51A|LTR|ERV1	-11364	NM_144508	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
53818	chr12	69284221	69284900	+	0	NA	Intergenic	Intergenic	-11342	NR_031692	100302182		NR_031692	ENSG00000283476	MIR1279	MIRN1279|hsa-mir-1279	microRNA 1279	ncRNA
231388	chr9	130711771	130711930	+	0	NA	Intergenic	Intergenic	-2031	NM_007313	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
89386	chr16	88802831	88803080	+	0	NA	promoter-TSS (NM_030928)	promoter-TSS (NM_030928)	-834	NM_030928	81620		NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding
203674	chr7	1013601	1013800	+	0	NA	intron (NR_146964, intron 1 of 4)	intron (NR_146964, intron 1 of 4)	9326	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
161246	chr3	39234621	39235230	+	0	NA	Intergenic	Intergenic	-42330	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
105304	chr17	82524651	82525030	+	0	NA	intron (NM_004514, intron 1 of 8)	intron (NM_004514, intron 1 of 8)	5108	NM_004514	3607		NM_004514	ENSG00000141568	FOXK2	ILF|ILF-1|ILF1|nGTBP	forkhead box K2	protein-coding
139767	chr2	230124901	230125300	+	0	NA	Intergenic	Intergenic	-56176	NM_152527	151473		NM_152527	ENSG00000163053	SLC16A14	MCT14	solute carrier family 16 member 14	protein-coding
5023	chr1	24498501	24500050	+	0	NA	intron (NR_144360, intron 1 of 1)	intron (NR_144360, intron 1 of 1)	-3069	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
209769	chr7	87222501	87222700	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-2013	NM_001329473	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
136614	chr2	178829301	178829500	+	0	NA	TTS (NM_173648)	TTS (NM_173648)	-21977	NM_001256850	7273		NM_003319	ENSG00000155657	TTN	CMD1G|CMH9|CMPD4|CMYP5|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD	titin	protein-coding
148114	chr20	63440301	63440500	+	0	NA	intron (NM_001382235, intron 5 of 16)	intron (NM_001382235, intron 5 of 16)	32255	NM_172106	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
58638	chr12	132508901	132509100	+	0	NA	intron (NM_001382740, intron 2 of 11)	intron (NM_001382740, intron 2 of 11)	3594	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
110290	chr19	1829821	1830080	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	7861	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
150210	chr21	39385551	39386500	+	0	NA	intron (NM_001350296, intron 1 of 4)	intron (NM_001350296, intron 1 of 4)	-1738	NM_001146218	7485		NM_004627	ENSG00000182093	GET1	CHD5|WRB	guided entry of tail-anchored proteins factor 1	protein-coding
147784	chr20	62604871	62605250	+	0	NA	Intergenic	Intergenic	-37443	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
100414	chr17	60551751	60552050	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-12646	NR_126009	388406		NR_126009	ENSG00000267772	LINC01999	-	long intergenic non-protein coding RNA 1999	ncRNA
179965	chr5	842371	842680	+	0	NA	intron (NM_024786, intron 4 of 12)	intron (NM_024786, intron 4 of 12)	8461	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
59805	chr13	30376321	30377320	+	0	NA	Intergenic	Intergenic	-2906	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
59491	chr13	26502971	26503130	+	0	NA	Intergenic	L3|LINE|CR1	-54633	NM_006646	10810		NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	WASP family member 3	protein-coding
53771	chr12	68772721	68773180	+	0	NA	non-coding (NR_149143, exon 5 of 5)	non-coding (NR_149143, exon 5 of 5)	26774	NM_018656	55508		NM_018656	ENSG00000175782	SLC35E3	BLOV1	solute carrier family 35 member E3	protein-coding
119663	chr19	40830571	40830930	+	0	NA	Intergenic	LTR33|LTR|ERVL	-19650	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
9472	chr1	50873501	50874200	+	0	NA	intron (NM_007051, intron 1 of 18)	MER66A|LTR|ERV1	86417	NM_007051	11124		NM_007051	ENSG00000185104	FAF1	CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1	Fas associated factor 1	protein-coding
163434	chr3	50584771	50584930	+	0	NA	3' UTR (NM_001377425, exon 11 of 11)	3' UTR (NM_001377425, exon 11 of 11)	-13823	NM_001171741	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
6768	chr1	30747051	30747380	+	0	NA	intron (NM_006762, intron 1 of 7)	L2b|LINE|L2	-7983	NR_039616	100616164		NR_039616	ENSG00000264773	MIR4420	mir-4420	microRNA 4420	ncRNA
129446	chr2	69499901	69500500	+	0	NA	intron (NM_001371575, intron 16 of 20)	intron (NM_001371575, intron 16 of 20)	19971	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
47700	chr12	6432601	6433300	+	0	NA	Intergenic	L1ME3G|LINE|L1	-12005	NM_001242	939		NM_001242	ENSG00000139193	CD27	S152|S152. LPFS2|T14|TNFRSF7|Tp55	CD27 molecule	protein-coding
125632	chr2	19359971	19360330	+	0	NA	Intergenic	Intergenic	-1527	NM_145260	130497		NM_145260	ENSG00000143867	OSR1	ODD	odd-skipped related transcription factor 1	protein-coding
230483	chr9	128224301	128224530	+	0	NA	intron (NM_001374269, intron 10 of 21)	(GCCCT)n|Simple_repeat|Simple_repeat	-20193	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
184131	chr5	94626101	94626300	+	0	NA	intron (NM_032290, intron 1 of 20)	AluY|SINE|Alu	7531	NM_032290	84250		NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding
28277	chr10	46021001	46021400	+	0	NA	intron (NM_001145263, intron 1 of 9)	intron (NM_001145263, intron 1 of 9)	-1663	NM_001145262	8031		NM_005437	ENSG00000266412	NCOA4	ARA70|ELE1|PTC3|RFG	nuclear receptor coactivator 4	protein-coding
157135	chr22	42794201	42794680	+	0	NA	Intergenic	Intergenic	62833	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
166256	chr3	112364351	112364750	+	0	NA	Intergenic	Intergenic	31394	NM_005944	4345		NM_005944	ENSG00000091972	CD200	MOX1|MOX2|MRC|OX-2	CD200 molecule	protein-coding
22679	chr1	223833721	223834380	+	0	NA	intron (NM_001031685, intron 1 of 17)	L2a|LINE|L2	11897	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
83133	chr16	22680551	22680930	+	0	NA	Intergenic	Intergenic	-133422	NM_006043	9956		NM_006043	ENSG00000122254	HS3ST2	30ST2|3OST2	heparan sulfate-glucosamine 3-sulfotransferase 2	protein-coding
116789	chr19	18516921	18517480	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	4870	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
192144	chr6	16836301	16836900	+	0	NA	Intergenic	Intergenic	-75110	NM_000332	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
140211	chr2	231710001	231711690	+	0	NA	intron (NM_002823, intron 1 of 4)	CpG-17106	2320	NM_002823	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
52987	chr12	57494101	57494530	+	0	NA	intron (NM_004990, intron 7 of 20)	intron (NM_004990, intron 7 of 20)	-5491	NM_001319850	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
156697	chr22	41680671	41681100	+	0	NA	intron (NM_001003796, intron 1 of 2)	AluSx3|SINE|Alu	7982	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
149414	chr21	31187951	31188350	+	0	NA	intron (NM_001353694, intron 13 of 27)	intron (NM_001353694, intron 13 of 27)	-27210	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
116617	chr19	18287321	18287930	+	0	NA	Intergenic	AluJb|SINE|Alu	5548	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA
119764	chr19	41292251	41292850	+	0	NA	intron (NM_144732, intron 8 of 14)	intron (NM_144732, intron 8 of 14)	-17622	NM_052848	90324		NM_052848	ENSG00000142039	CCDC97	-	coiled-coil domain containing 97	protein-coding
74387	chr15	58907171	58907330	+	0	NA	intron (NR_135043, intron 4 of 18)	intron (NR_135043, intron 4 of 18)	26429	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
215309	chr7	157336121	157338530	+	0	NA	intron (NM_001363676, intron 1 of 6)	CpG	321	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
220873	chr8	103417871	103418030	+	0	NA	intron (NM_015420, intron 1 of 10)	AluY|SINE|Alu	2564	NM_015420	25879		NM_015420	ENSG00000164934	DCAF13	GM83|HSPC064|Sof1|WDSOF1	DDB1 and CUL4 associated factor 13	protein-coding
113679	chr19	10397221	10398280	+	0	NA	intron (NM_007065, intron 1 of 7)	intron (NM_007065, intron 1 of 7)	5788	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
53948	chr12	71843701	71843900	+	0	NA	intron (NR_027449, intron 1 of 15)	intron (NR_027449, intron 1 of 15)	4041	NM_022771	64786		NM_022771	ENSG00000121749	TBC1D15	RAB7-GAP	TBC1 domain family member 15	protein-coding
222040	chr8	130236121	130236780	+	0	NA	intron (NM_001362924, intron 4 of 30)	intron (NM_001362924, intron 4 of 30)	60083	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
67069	chr14	67881171	67881830	+	0	NA	intron (NM_133509, intron 5 of 10)	L1MEc|LINE|L1	57908	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
147683	chr20	62310571	62310800	+	0	NA	exon (NM_005560, exon 75 of 80)	exon (NM_005560, exon 75 of 80)	7688	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
127858	chr2	45648601	45649050	+	0	NA	Intergenic	Intergenic	-2850	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
118542	chr19	36114501	36116450	+	0	NA	promoter-TSS (NM_001300971)	promoter-TSS (NM_001300971)	7	NM_001281	1155		NM_001281	ENSG00000105254	TBCB	CG22|CKAP1|CKAPI	tubulin folding cofactor B	protein-coding
154833	chr22	37067671	37068030	+	0	NA	intron (NM_153609, intron 16 of 17)	intron (NM_153609, intron 16 of 17)	16114	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
12795	chr1	109792171	109792700	+	0	NA	Intergenic	Intergenic	-28512	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
179851	chr5	522921	523180	+	0	NA	intron (NM_001284351, intron 1 of 16)	GA-rich|Low_complexity|Low_complexity	1399	NM_001284351	6550		NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
64376	chr14	24140771	24142180	+	0	NA	5' UTR (NM_016049, exon 1 of 6)	5' UTR (NM_016049, exon 1 of 6)	116	NM_001346877	51016		NM_016049	ENSG00000100908	EMC9	C14orf122|CGI-112|FAM158A	ER membrane protein complex subunit 9	protein-coding
42396	chr11	68965451	68966230	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	15146	NM_198923	116512		NM_198923	ENSG00000172938	MRGPRD	MRGD|TGR7	MAS related GPR family member D	protein-coding
65349	chr14	50335951	50336600	+	0	NA	intron (NM_001282236, intron 7 of 8)	intron (NM_001282236, intron 7 of 8)	23951	NM_015684	27109		NM_015684	ENSG00000125375	DMAC2L	ATP5S|ATPW|FB|HSU79253	distal membrane arm assembly component 2 like	protein-coding
61341	chr13	50891221	50891480	+	0	NA	intron (NR_046552, intron 1 of 2)	MER63A|DNA|hAT-Blackjack	-18328	NM_001142279	79621		NM_024570	ENSG00000136104	RNASEH2B	AGS2|DLEU8	ribonuclease H2 subunit B	protein-coding
145393	chr20	41407621	41407950	+	0	NA	intron (NM_032221, intron 36 of 36)	intron (NM_032221, intron 36 of 36)	-40967	NM_052846	90187		NM_052846	ENSG00000183798	EMILIN3	C20orf130|EMILIN5|dJ620E11.4	elastin microfibril interfacer 3	protein-coding
109211	chr19	467551	467850	+	0	NA	exon (NM_001385597, exon 2 of 3)	exon (NM_001385597, exon 2 of 3)	4931	NM_001385600	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
183355	chr5	77042571	77042730	+	0	NA	intron (NM_018046, intron 5 of 13)	SVA_F|Retroposon|SVA	12246	NM_018046	55109		NM_013303	ENSG00000164252	AGGF1	GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q	angiogenic factor with G-patch and FHA domains 1	protein-coding
35897	chr11	2408571	2409530	+	0	NA	intron (NM_014555, intron 18 of 23)	intron (NM_014555, intron 18 of 23)	8300	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
12760	chr1	109629301	109629730	+	0	NA	intron (NM_139156, intron 14 of 17)	intron (NM_139156, intron 14 of 17)	5527	NM_001257361	271		NM_004037	ENSG00000116337	AMPD2	AMPD|PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding
205519	chr7	18352351	18352780	+	0	NA	intron (NM_001321896, intron 1 of 12)	intron (NM_001321896, intron 1 of 12)	62473	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
135517	chr2	162058971	162059730	+	0	NA	intron (NR_166824, intron 2 of 25)	intron (NR_166824, intron 2 of 25)	14865	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
145142	chr20	38826271	38827180	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	21028	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
95120	chr17	35002901	35003100	+	0	NA	exon (NM_002311, exon 20 of 20)	exon (NM_002311, exon 20 of 20)	22488	NM_013975	3980		NM_002311	ENSG00000005156	LIG3	LIG2|LIG3alpha|MTDPS20	DNA ligase 3	protein-coding
214405	chr7	149807051	149807480	+	0	NA	intron (NR_163594, intron 58 of 102)	intron (NR_163594, intron 58 of 102)	-31110	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
40744	chr11	64832451	64833600	+	0	NA	intron (NM_017525, intron 24 of 36)	intron (NM_017525, intron 24 of 36)	11628	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
215003	chr7	152371321	152371780	+	0	NA	intron (NM_170606, intron 1 of 58)	L1M1|LINE|L1	64453	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
76815	chr15	77072421	77072680	+	0	NA	Intergenic	Intergenic	-1441	NM_198902	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
81263	chr16	4623371	4623530	+	0	NA	Intergenic	AluSz|SINE|Alu	-1374	NM_001142289	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
218088	chr8	38942351	38942850	+	0	NA	intron (NM_021623, intron 3 of 11)	intron (NM_021623, intron 3 of 11)	-31628	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
204722	chr7	5550471	5551330	+	0	NA	Intergenic	MIR3|SINE|MIR	-20299	NM_001101	60		NM_001101	ENSG00000075624	ACTB	BKRNS|BNS|BRWS1|CSMH|DDS1|PS1TP5BP1|THC8	actin beta	protein-coding
42851	chr11	73218121	73218600	+	0	NA	promoter-TSS (NM_002564)	promoter-TSS (NM_002564)	79	NM_176072	5029		NM_002564	ENSG00000175591	P2RY2	HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R	purinergic receptor P2Y2	protein-coding
43331	chr11	76443071	76443230	+	0	NA	Intergenic	MIR|SINE|MIR	-1868	NM_001300942	56946		NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY transcriptional repressor, BRCA2 interacting	protein-coding
1242	chr1	2286451	2287250	+	0	NA	intron (NM_003036, intron 1 of 6)	MER45B|DNA|hAT-Tip100	58531	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
67603	chr14	72531321	72531900	+	0	NA	intron (NM_001370288, intron 15 of 16)	intron (NM_001370288, intron 15 of 16)	14790	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
233741	chrX	1381271	1381780	+	0	NA	intron (NM_001267713, intron 9 of 9).2	intron (NM_001267713, intron 9 of 9).2	10588	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
224077	chr9	4296521	4298550	+	0	NA	intron (NM_001042413, intron 1 of 10)	intron (NM_001042413, intron 1 of 10)	2533	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
88580	chr16	85568671	85568830	+	0	NA	Intergenic	Intergenic	-42659	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
162726	chr3	49017701	49018930	+	0	NA	exon (NM_001009996, exon 2 of 12)	exon (NM_001009996, exon 2 of 12)	265	NM_001009996	55152		NM_018114	ENSG00000178149	DALRD3	DEE86|EIEE86	DALR anticodon binding domain containing 3	protein-coding
197224	chr6	65999051	65999150	+	0	NA	Intergenic	LTR12C|LTR|ERV1	211221	NR_026540	442229		NR_026540		SLC25A51P1	MCART3P|bA707M13.1	SLC25A51 pseudogene 1	pseudo
211018	chr7	102392871	102393230	+	0	NA	intron (NR_038967, intron 4 of 8)	AluSx|SINE|Alu	-3313	NM_024653	79706		NM_024653	ENSG00000128563	PRKRIP1	C114|KRBOX3	PRKR interacting protein 1	protein-coding
42158	chr11	67790851	67791150	+	0	NA	TTS (NR_024249)	TTS (NR_024249)	14336	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
180267	chr5	1784921	1785380	+	0	NA	Intergenic	Intergenic	14687	NM_032479	64979		NM_032479	ENSG00000171421	MRPL36	BRIP1|L36mt|MRP-L36|PRPL36|RPMJ|bL36m	mitochondrial ribosomal protein L36	protein-coding
145099	chr20	38729271	38729830	+	0	NA	TTS (NM_080552)	TTS (NM_080552)	5064	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
111970	chr19	4858051	4858550	+	0	NA	intron (NM_005817, intron 4 of 7)	MIR|SINE|MIR	9367	NM_001164194	10226		NM_005817	ENSG00000105355	PLIN3	M6PRBP1|PP17|TIP47	perilipin 3	protein-coding
150037	chr21	37365791	37368950	+	0	NA	promoter-TSS (NM_101395)	promoter-TSS (NM_101395)	-187	NM_101395	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
25257	chr10	6068151	6070030	+	0	NA	Intergenic	Intergenic	-6723	NM_001308243	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
188336	chr5	151249901	151250330	+	0	NA	Intergenic	AluY|SINE|Alu	-3070	NM_000405	2760		NM_000405	ENSG00000196743	GM2A	GM2-AP|GM2AP|SAP-3	ganglioside GM2 activator	protein-coding
219537	chr8	76980351	76980780	+	0	NA	3' UTR (NM_001079867, exon 3 of 3)	3' UTR (NM_001079867, exon 3 of 3)	-13715	NR_130460	100422921		NR_130460	ENSG00000266712	MIR3149	-	microRNA 3149	ncRNA
176150	chr4	83212001	83213200	+	0	NA	Intergenic	Intergenic	72198	NM_001358921	27235		NM_015697	ENSG00000173085	COQ2	CL640|COQ10D1|MSA1|PHB:PPT	coenzyme Q2, polyprenyltransferase	protein-coding
124274	chr19	57809971	57810450	+	0	NA	intron (NM_024762, intron 2 of 2)	AluSp|SINE|Alu	4703	NM_024762	79818		NM_024762	ENSG00000178935	ZNF552	-	zinc finger protein 552	protein-coding
228892	chr9	112749771	112752250	+	0	NA	exon (NM_001012994, exon 1 of 9)	exon (NM_001012994, exon 1 of 9)	250	NM_001012994	401548		NM_001012994	ENSG00000148158	SNX30	ATG24A	sorting nexin family member 30	protein-coding
202891	chr6	159984501	159984900	+	0	NA	intron (NM_000876, intron 1 of 47)	Tigger3c|DNA|TcMar-Tigger	15618	NM_000876	3482		NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding
99864	chr17	56002671	56003030	+	0	NA	Intergenic	L1PA3|LINE|L1	-150625	NM_001365758	162282		NM_153228	ENSG00000153930	ANKFN1	-	ankyrin repeat and fibronectin type III domain containing 1	protein-coding
135760	chr2	169590501	169591100	+	0	NA	intron (NM_004792, intron 1 of 13)	intron (NM_004792, intron 1 of 13)	6449	NM_004792	9360		NM_004792	ENSG00000138398	PPIG	CARS-Cyp|CYP|SCAF10|SRCyp	peptidylprolyl isomerase G	protein-coding
177740	chr4	122479871	122480230	+	0	NA	Intergenic	MER72|LTR|ERV1	-23325	NM_000586	3558		NM_000586	ENSG00000109471	IL2	IL-2|TCGF|lymphokine	interleukin 2	protein-coding
5145	chr1	24903921	24905200	+	0	NA	intron (NM_001031680, intron 5 of 5)	intron (NM_001031680, intron 5 of 5)	14856	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
200430	chr6	135008701	135008900	+	0	NA	intron (NM_006620, intron 4 of 17)	intron (NM_006620, intron 4 of 17)	-29368	NR_037435	100500880		NR_037435	ENSG00000283409	MIR3662	mir-3662	microRNA 3662	ncRNA
94801	chr17	31226471	31226650	+	0	NA	exon (NM_000267, exon 18 of 57)	exon (NM_000267, exon 18 of 57)	70679	NM_002544	4974		NM_002544	ENSG00000126861	OMG	OMGP	oligodendrocyte myelin glycoprotein	protein-coding
94495	chr17	29289971	29290150	+	0	NA	intron (NM_020772, intron 1 of 3)	AluSz|SINE|Alu	4088	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
17450	chr1	156690801	156691430	+	0	NA	Intergenic	Intergenic	-13708	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
142036	chr20	1678051	1678350	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-20421	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
209381	chr7	76307351	76308000	+	0	NA	Intergenic	Intergenic	5002	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
31028	chr10	88835071	88836280	+	0	NA	intron (NM_144590, intron 1 of 5)	Tigger3c|DNA|TcMar-Tigger	16169	NM_144590	118932		NM_144590	ENSG00000152766	ANKRD22	-	ankyrin repeat domain 22	protein-coding
30726	chr10	83959601	83960000	+	0	NA	Intergenic	Intergenic	-179709	NM_014394	27069		NM_014394	ENSG00000165678	GHITM	DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5	growth hormone inducible transmembrane protein	protein-coding
168843	chr3	152268201	152269200	+	0	NA	promoter-TSS (NM_207292)	promoter-TSS (NM_207292)	-229	NM_001376823	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
135491	chr2	161741251	161741350	+	0	NA	intron (NM_001354443, intron 2 of 25)	tRNA-Tyr-TAC|tRNA|tRNA	116884	NM_001354449	57282		NM_022058	ENSG00000144290	SLC4A10	NBCn2|NCBE	solute carrier family 4 member 10	protein-coding
29153	chr10	68713551	68714050	+	0	NA	Intergenic	MER31A|LTR|ERV1	-7439	NM_001282960	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
94108	chr17	27878651	27879280	+	0	NA	3' UTR (NM_001076680, exon 4 of 4)	3' UTR (NM_001076680, exon 4 of 4)	14400	NM_001076680	201229		NM_001076680	ENSG00000232859	LYRM9	C17orf108|HSD24	LYR motif containing 9	protein-coding
72125	chr15	28963421	28963880	+	0	NA	intron (NM_001353793, intron 1 of 12).2	intron (NM_001353793, intron 1 of 12).2	29646	NM_001353793	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
106	chr1	483571	484080	+	0	NA	Intergenic	AluSz|SINE|Alu	11620	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
38332	chr11	44538071	44538700	+	0	NA	Intergenic	MIRc|SINE|MIR	-27278	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
94460	chr17	29257771	29258630	+	0	NA	3' UTR (NM_020772, exon 4 of 4)	3' UTR (NM_020772, exon 4 of 4)	11341	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
98231	chr17	46156841	46157800	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	35462	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
2675	chr1	10522501	10522800	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	47700	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
48767	chr12	11547171	11547750	+	0	NA	promoter-TSS (NR_033890)	promoter-TSS (NR_033890)	-570	NR_033890	338817		NR_033890	ENSG00000247157	LINC01252	-	long intergenic non-protein coding RNA 1252	ncRNA
17111	chr1	156153971	156154610	+	0	NA	promoter-TSS (NM_001370567)	promoter-TSS (NM_001370567)	-258	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
219316	chr8	70141301	70143030	+	0	NA	intron (NM_001321711, intron 12 of 21)	intron (NM_001321711, intron 12 of 21)	-70913	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
188517	chr5	155727851	155728790	+	0	NA	Intergenic	CpG	-598844	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
182135	chr5	56156321	56157380	+	0	NA	intron (NM_024669, intron 6 of 11)	intron (NM_024669, intron 6 of 11)	76480	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
123463	chr19	54154801	54156230	+	0	NA	3' UTR (NM_024316, exon 4 of 4).2	3' UTR (NM_024316, exon 4 of 4).2	4206	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
172540	chr4	2364101	2365630	+	0	NA	promoter-TSS (NM_001172660)	promoter-TSS (NM_001172660)	-51	NM_001172659	57732		NM_020972	ENSG00000159733	ZFYVE28	LST2|LYST2|lst-2	zinc finger FYVE-type containing 28	protein-coding
224226	chr9	5631171	5631850	+	0	NA	intron (NM_001206557, intron 1 of 24)	AluSc|SINE|Alu	2391	NM_001206557	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
147298	chr20	57657351	57658280	+	0	NA	intron (NM_020182, intron 2 of 3)	intron (NM_020182, intron 2 of 3)	32871	NM_001255976	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
46420	chr11	126465401	126466430	+	0	NA	intron (NM_001161707, intron 5 of 13)	intron (NM_001161707, intron 5 of 13)	59828	NM_001254759	6484		NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding
25777	chr10	11152221	11152700	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-12421	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
186642	chr5	138561301	138561780	+	0	NA	promoter-TSS (NR_002913)	promoter-TSS (NR_002913)	-430	NR_002913	26785		NR_002913	ENSG00000206989	SNORD63	RNU63|SNORD63A|U63	small nucleolar RNA, C/D box 63	snoRNA
194627	chr6	33573801	33574430	+	0	NA	exon (NM_001188, exon 5 of 6)	exon (NM_001188, exon 5 of 6)	6161	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
132399	chr2	105789821	105791680	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	45687	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
202397	chr6	157864221	157864480	+	0	NA	intron (NM_016224, intron 1 of 17)	MLT1A1|LTR|ERVL-MaLR	41104	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
168221	chr3	141293371	141293850	+	0	NA	3' UTR (NM_001037172, exon 6 of 6)	3' UTR (NM_001037172, exon 6 of 6)	-30576	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
106565	chr18	21705921	21706600	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1486	NM_138340	171586		NM_138340	ENSG00000158201	ABHD3	LABH3	abhydrolase domain containing 3, phospholipase	protein-coding
83880	chr16	28944271	28944630	+	0	NA	Intergenic	AluSx|SINE|Alu	-6547	NM_032815	84901		NM_032815	ENSG00000176953	NFATC2IP	ESC2|NIP45|RAD60	nuclear factor of activated T cells 2 interacting protein	protein-coding
2627	chr1	10208671	10209030	+	0	NA	Intergenic	Intergenic	-1720	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
42026	chr11	67427901	67429780	+	0	NA	intron (NM_003952, intron 1 of 14)	intron (NM_003952, intron 1 of 14)	346	NM_003952	6199		NM_003952	ENSG00000175634	RPS6KB2	KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb	ribosomal protein S6 kinase B2	protein-coding
181587	chr5	43315321	43315800	+	0	NA	Intergenic	LTR10F|LTR|ERV1	-2148	NM_001324224	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
169931	chr3	178436771	178436930	+	0	NA	intron (NR_046786, intron 1 of 2)	intron (NR_046786, intron 1 of 2)	17649	NR_046786	100874330		NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA
17818	chr1	159866971	159867130	+	0	NA	Intergenic	Intergenic	-4393	NM_001013661	391123		NM_001013661	ENSG00000243284	VSIG8	-	V-set and immunoglobulin domain containing 8	protein-coding
141352	chr2	240616851	240617280	+	0	NA	intron (NM_001195382, intron 3 of 5)	MLT1F2|LTR|ERVL-MaLR	-8180	NM_005301	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
113646	chr19	10353471	10354280	+	0	NA	intron (NM_001385207, intron 20 of 24)	intron (NM_001385207, intron 20 of 24)	-14251	NM_002162	3385		NM_002162	ENSG00000076662	ICAM3	CD50|CDW50|ICAM-R	intercellular adhesion molecule 3	protein-coding
93658	chr17	19196151	19197130	+	0	NA	Intergenic	CpG	-6395	NR_006881	780853		NR_006881		SNORD3C	RNU3-3|U3-3	small nucleolar RNA, C/D box 3C	snoRNA
209887	chr7	91881901	91882100	+	0	NA	Intergenic	AluSc|SINE|Alu	-1298	NM_001301134	7978		NM_006980	ENSG00000127989	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
139889	chr2	230694221	230694480	+	0	NA	intron (NR_040038, intron 3 of 3)	intron (NR_040038, intron 3 of 3)	6179	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
174320	chr4	38660451	38660950	+	0	NA	intron (NR_026804, intron 1 of 7)	L2a|LINE|L2	-3499	NM_016531	51274		NM_016531	ENSG00000109787	KLF3	BKLF	KLF transcription factor 3	protein-coding
213140	chr7	131423771	131424530	+	0	NA	intron (NM_001145354, intron 9 of 18)	intron (NM_001145354, intron 9 of 18)	96274	NM_013255	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
18343	chr1	161204771	161204930	+	0	NA	intron (NR_165188, intron 2 of 11)	AluSx|SINE|Alu	2483	NM_001377299	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
89361	chr16	88775851	88776280	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	9155	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
115161	chr19	14417501	14418600	+	0	NA	intron (NR_046366, intron 1 of 9)	AluSz|SINE|Alu	1291	NM_005804	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
136864	chr2	186592171	186592550	+	0	NA	intron (NM_001145000, intron 1 of 27)	AluJb|SINE|Alu	2304	NM_002210	3685		NM_002210	ENSG00000138448	ITGAV	CD51|MSK8|VNRA|VTNR	integrin subunit alpha V	protein-coding
135336	chr2	160384871	160385380	+	0	NA	intron (NM_016836, intron 1 of 13)	MSTB|LTR|ERVL-MaLR	22757	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
113990	chr19	10832601	10833080	+	0	NA	TTS (NM_001190716)	TTS (NM_001190716)	2900	NR_104015	11018		NM_006858	ENSG00000099203	TMED1	IL1RL1LG|Il1rl1l|Tp24|p24g1	transmembrane p24 trafficking protein 1	protein-coding
153910	chr22	30312971	30313780	+	0	NA	intron (NM_001204240, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	13566	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
121121	chr19	45996801	45997000	+	0	NA	intron (NM_001267723, intron 1 of 13)	L2a|LINE|L2	1433	NM_001267723	729440		NM_001080402	ENSG00000104983	CCDC61	VFL3|hVFL3	coiled-coil domain containing 61	protein-coding
84304	chr16	30090901	30091100	+	0	NA	intron (NM_004608, intron 2 of 8)	intron (NM_004608, intron 2 of 8)	924	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
3028	chr1	12127001	12127200	+	0	NA	intron (NM_001281430, intron 11 of 13)	intron (NM_001281430, intron 11 of 13)	-39843	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
51692	chr12	53158301	53158500	+	0	NA	3' UTR (NM_015989, exon 17 of 17)	3' UTR (NM_015989, exon 17 of 17)	6093	NM_001244706	51380		NM_015989	ENSG00000139631	CSAD	CSD|PCAP	cysteine sulfinic acid decarboxylase	protein-coding
32044	chr10	101039071	101039230	+	0	NA	intron (NM_030971, intron 10 of 11)	intron (NM_030971, intron 10 of 11)	7911	NM_030971	81855		NM_030971	ENSG00000107819	SFXN3	BA108L7.2|SFX3|SLC56A3	sideroflexin 3	protein-coding
129479	chr2	69591801	69592000	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	51838	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
188760	chr5	157582921	157583180	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-7275	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
127677	chr2	43190421	43191480	+	0	NA	Intergenic	Intergenic	35656	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
75352	chr15	65515601	65515800	+	0	NA	non-coding (NR_135486, exon 2 of 22)	non-coding (NR_135486, exon 2 of 22)	1574	NR_135486	54878		NM_017743	ENSG00000074603	DPP8	DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141	dipeptidyl peptidase 8	protein-coding
188491	chr5	154785571	154785730	+	0	NA	intron (NM_001367719, intron 1 of 18)	intron (NM_001367719, intron 1 of 18)	28496	NM_001367719	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
165762	chr3	105756871	105757780	+	0	NA	intron (NR_135806, intron 4 of 20)	L1ME3B|LINE|L1	110266	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
195582	chr6	37519771	37519930	+	0	NA	intron (NR_126057, intron 1 of 3)	intron (NR_126057, intron 1 of 3)	12502	NR_126057	100505530		NM_001039791		LINC02520	-	long intergenic non-protein coding RNA 2520	ncRNA
207342	chr7	44066121	44067050	+	0	NA	3' UTR (NM_001284313, exon 11 of 11)	3' UTR (NM_001284313, exon 11 of 11)	-1018	NM_000290	5224		NM_000290	ENSG00000164708	PGAM2	GSD10|PGAM-M|PGAMM	phosphoglycerate mutase 2	protein-coding
150804	chr21	43935201	43935400	+	0	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	9902	NM_001037553	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
106472	chr18	14172821	14173180	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-6097	NR_040113	440482		NM_001029999		ANKRD20A5P	ANKRD20A5	ankyrin repeat domain 20 family member A5, pseudogene	pseudo
143911	chr20	32592071	32592230	+	0	NA	intron (NR_034152, intron 1 of 2)	L2c|LINE|L2	4671	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
167526	chr3	129283651	129283750	+	0	NA	intron (NM_001370345, intron 2 of 5)	AluSp|SINE|Alu	4706	NM_001370343	56941		NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine binding, ES cell specific	protein-coding
73766	chr15	45523921	45524550	+	0	NA	intron (NR_022014, intron 3 of 5)	Tigger1|DNA|TcMar-Tigger	-1480	NM_013309	7782		NM_013309	ENSG00000104154	SLC30A4	ZNT4|znT-4	solute carrier family 30 member 4	protein-coding
62961	chr13	112285701	112286330	+	0	NA	Intergenic	Intergenic	-13015	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
77564	chr15	84928101	84928630	+	0	NA	intron (NM_001287761, intron 11 of 14)	intron (NM_001287761, intron 11 of 14)	43703	NM_001321721	9154		NM_004213	ENSG00000156222	SLC28A1	CNT1|HCNT1|URCTU	solute carrier family 28 member 1	protein-coding
31156	chr10	90865471	90865850	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-6314	NM_001104546	10556		NM_006413	ENSG00000148688	RPP30	TSG15	ribonuclease P/MRP subunit p30	protein-coding
233412	chr9	137580551	137581250	+	0	NA	Intergenic	Intergenic	-1975	NM_138778	92715		NM_138778	ENSG00000148399	DPH7	C9orf112|RRT2|WDR85	diphthamide biosynthesis 7	protein-coding
32552	chr10	103349271	103349700	+	0	NA	intron (NM_001011663, intron 1 of 9)	AluSg|SINE|Alu	1655	NM_032154	84108		NM_032154	ENSG00000156374	PCGF6	MBLR|RNF134	polycomb group ring finger 6	protein-coding
85960	chr16	57278951	57279250	+	0	NA	intron (NM_015993, intron 1 of 3)	intron (NM_015993, intron 1 of 3)	5572	NM_015993	51090		NM_015993	ENSG00000102934	PLLP	PMLP|TM4SF11	plasmolipin	protein-coding
207193	chr7	43628801	43629330	+	0	NA	intron (NR_163918, intron 8 of 9)	L1MDa|LINE|L1	45957	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
148561	chr20	64260371	64260530	+	0	NA	intron (NM_018257, intron 2 of 5)	intron (NM_018257, intron 2 of 5)	4702	NM_018257	55251		NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding
234594	chrX	19791221	19792280	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	8023	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
78372	chr15	91472301	91473050	+	0	NA	intron (NR_110106, intron 1 of 3)	L1MB8|LINE|L1	9336	NR_110106	101926928		NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
94073	chr17	27475151	27475650	+	0	NA	intron (NM_014238, intron 1 of 20)	intron (NM_014238, intron 1 of 20)	3436	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
199900	chr6	127859751	127860430	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-4902	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
26006	chr10	12181101	12182180	+	0	NA	intron (NM_001321648, intron 3 of 10)	Tigger4|DNA|TcMar-Tigger	14251	NM_014142	11164		NM_014142	ENSG00000165609	NUDT5	YSA1|YSA1H|YSAH1|hNUDT5	nudix hydrolase 5	protein-coding
179357	chr4	183342721	183343150	+	0	NA	Intergenic	Intergenic	-20509	NM_001185149	100132463		NM_001185149	ENSG00000185758	CLDN24	CLDN21	claudin 24	protein-coding
50195	chr12	46183251	46183550	+	0	NA	3' UTR (NM_001077484, exon 17 of 17)	3' UTR (NM_001077484, exon 17 of 17)	83116	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
169759	chr3	172577871	172578880	+	0	NA	intron (NR_146714, intron 2 of 3)	THE1D|LTR|ERVL-MaLR	17232	NR_146714	105374219		NR_146714	ENSG00000223387	LINC02068	-	long intergenic non-protein coding RNA 2068	ncRNA
65147	chr14	45132421	45132680	+	0	NA	intron (NM_002013, intron 1 of 6)	AluSc8|SINE|Alu	1931	NM_002013	2287		NM_002013	ENSG00000100442	FKBP3	FKBP-25|FKBP-3|FKBP25|PPIase	FKBP prolyl isomerase 3	protein-coding
158689	chr3	5195721	5196080	+	0	NA	intron (NM_014674, intron 2 of 11)	intron (NM_014674, intron 2 of 11)	8193	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
106104	chr18	9159721	9160630	+	0	NA	intron (NM_001204056, intron 1 of 11)	AluJb|SINE|Alu	22612	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
22861	chr1	225474801	225475700	+	0	NA	Intergenic	CpG	-46395	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
78901	chr15	101126471	101126940	+	0	NA	Intergenic	MIRb|SINE|MIR	125343	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
66314	chr14	61413101	61413630	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	91922	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
119286	chr19	39737351	39737850	+	0	NA	intron (NM_001828, intron 1 of 3)	intron (NM_001828, intron 1 of 3)	429	NM_001828	1178		NM_001828	ENSG00000105205	CLC	GAL10|Gal-10|LGALS10|LGALS10A|LPPL_HUMAN	Charcot-Leyden crystal galectin	protein-coding
50408	chr12	47359351	47360000	+	0	NA	Intergenic	L1PA15|LINE|L1	4594	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
85995	chr16	57461371	57461530	+	0	NA	TTS (NM_020312)	TTS (NM_020312)	-1229	NM_032940	5432		NM_002694	ENSG00000102978	POLR2C	RPB3|RPB31|hRPB33|hsRPB3	RNA polymerase II subunit C	protein-coding
94286	chr17	28719441	28720930	+	0	NA	promoter-TSS (NR_000013)	promoter-TSS (NR_000013)	200	NM_000984	6147		NM_000984	ENSG00000198242	RPL23A	L23A|MDA20|uL23	ribosomal protein L23a	protein-coding
31398	chr10	95266701	95267000	+	0	NA	intron (NM_020992, intron 3 of 6)	intron (NM_020992, intron 3 of 6)	24153	NM_020992	9124		NM_020992	ENSG00000107438	PDLIM1	CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1	PDZ and LIM domain 1	protein-coding
13954	chr1	120355671	120355830	+	0	NA	Intergenic	AluY|SINE|Alu	-59277	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
50160	chr12	45916501	45916900	+	0	NA	Intergenic	MIRb|SINE|MIR	73874	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
19749	chr1	181395721	181396880	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-87217	NM_001205293	777		NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|DEE69|EIEE69|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding
199650	chr6	122402321	122402800	+	0	NA	intron (NM_001135564, intron 1 of 11)	intron (NM_001135564, intron 1 of 11)	2908	NM_001243094	3298		NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding
158560	chr3	4495751	4496400	+	0	NA	intron (NM_002222, intron 2 of 57)	intron (NM_002222, intron 2 of 57)	2727	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
228725	chr9	109121521	109121780	+	0	NA	Intergenic	LTR36|LTR|ERV1	-1703	NM_032012	23731		NM_032012	ENSG00000106771	TMEM245	C9orf5|CG-2|CG2	transmembrane protein 245	protein-coding
22400	chr1	219612971	219613170	+	0	NA	promoter-TSS (NM_001355457)	promoter-TSS (NM_001355457)	75	NM_001355457	643136		NM_001085394	ENSG00000215817	ZC3H11B	ZC3HDC11B	zinc finger CCCH-type containing 11B	protein-coding
54719	chr12	93536651	93536950	+	0	NA	Intergenic	Chap1_Mam|DNA|hAT-Charlie	-33169	NM_003877	8835		NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
212401	chr7	128114721	128114980	+	0	NA	Intergenic	MIR|SINE|MIR	32989	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
79047	chr16	83751	84100	+	0	NA	intron (NM_001015054, intron 3 of 3)	intron (NM_001015054, intron 3 of 3)	5700	NM_001015052	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
222454	chr8	139405771	139406030	+	0	NA	Intergenic	Intergenic	297223	NR_104210	51305		NM_001282534	ENSG00000169427	KCNK9	BIBARS|K2p9.1|KT3.2|TASK-3|TASK3|TASK32	potassium two pore domain channel subfamily K member 9	protein-coding
22168	chr1	212252851	212253150	+	0	NA	intron (NR_125984, intron 1 of 3)	AluSx|SINE|Alu	-18264	NR_125982	101929541		NR_125982	ENSG00000226251	LINC02608	-	long intergenic non-protein coding RNA 2608	ncRNA
69243	chr14	92891101	92891530	+	0	NA	Intergenic	Intergenic	16167	NR_135253	101929002		NR_135253	ENSG00000258499	LINC02287	-	long intergenic non-protein coding RNA 2287	ncRNA
111699	chr19	4281071	4281230	+	0	NA	intron (NM_001372011, intron 2 of 6)	MIRb|SINE|MIR	1884	NM_020209	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
74189	chr15	55681771	55681950	+	0	NA	intron (NM_173814, intron 4 of 19)	MER2|DNA|TcMar-Tigger	61292	NM_173814	283659		NM_173814	ENSG00000166450	PRTG	IGDCC5	protogenin	protein-coding
151619	chr22	12601801	12602300	+	0	NA	Intergenic	CpG	704644	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
209506	chr7	76958551	76958950	+	0	NA	Intergenic	AluYc|SINE|Alu	-22072	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
132093	chr2	101316001	101316400	+	0	NA	Intergenic	L1PA6|LINE|L1	6750	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
151787	chr22	18149521	18150700	+	0	NA	promoter-TSS (NM_017414)	promoter-TSS (NM_017414)	-60	NM_017414	11274		NM_017414	ENSG00000184979	USP18	ISG43|PTORCH2|UBP43	ubiquitin specific peptidase 18	protein-coding
180139	chr5	1332671	1333780	+	0	NA	intron (NM_030782, intron 7 of 16)	intron (NM_030782, intron 7 of 16)	11874	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
97145	chr17	42561571	42562930	+	0	NA	5' UTR (NM_025233, exon 1 of 9)	5' UTR (NM_025233, exon 1 of 9)	102	NM_001042529	80347		NM_025233	ENSG00000068120	COASY	DPCK|NBIA6|NBP|PCH12|PPAT|UKR1|pOV-2	Coenzyme A synthase	protein-coding
96002	chr17	39209651	39211380	+	0	NA	TTS (NM_198993)	TTS (NM_198993)	10192	NM_001330200	6143		NM_000981	ENSG00000108298	RPL19	L19|eL19	ribosomal protein L19	protein-coding
45267	chr11	118005551	118005650	+	0	NA	Intergenic	L2b|LINE|L2	19206	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
90973	chr17	2697971	2698550	+	0	NA	exon (NM_001366662, exon 10 of 26)	exon (NM_001366662, exon 10 of 26)	-5341	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
91739	chr17	6713071	6713930	+	0	NA	promoter-TSS (NM_001284509)	promoter-TSS (NM_001284509)	-131	NM_001284509	284111		NM_177550	ENSG00000141485	SLC13A5	DEE25|EIEE25|INDY|NACT|mIndy	solute carrier family 13 member 5	protein-coding
95731	chr17	38579801	38580630	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	25737	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
53251	chr12	62606051	62606150	+	0	NA	Intergenic	Intergenic	2414	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
238975	chrX	155394671	155395150	+	0	NA	Intergenic	L1PREC2|LINE|L1	-11712	NR_036259	100422985		NR_036259	ENSG00000221190	MIR1184-2	-	microRNA 1184-2	ncRNA
144219	chr20	34367451	34367550	+	0	NA	intron (NM_031483, intron 1 of 24)	MIR3|SINE|MIR	4227	NM_031483	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
172273	chr4	1467801	1468000	+	0	NA	Intergenic	Intergenic	-61458	NM_001290079	54729		NM_001290079	ENSG00000235608	NKX1-1	HSPX153|NKX-1.1|SAX2	NK1 homeobox 1	protein-coding
30203	chr10	74823821	74824490	+	0	NA	Intergenic	Intergenic	-1100	NM_001370139	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
130395	chr2	85319821	85320250	+	0	NA	3' UTR (NM_001206841, exon 4 of 4)	3' UTR (NM_001206841, exon 4 of 4)	7954	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
181806	chr5	52709371	52710130	+	0	NA	Intergenic	Intergenic	-78166	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
142584	chr20	5542051	5542430	+	0	NA	Intergenic	AluSz6|SINE|Alu	-32238	NR_109860	101929207		NR_109860	ENSG00000225640	LINC01729	-	long intergenic non-protein coding RNA 1729	ncRNA
147266	chr20	57451271	57451430	+	0	NA	Intergenic	Intergenic	-58294	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
204895	chr7	6083951	6084450	+	0	NA	Intergenic	AluSx|SINE|Alu	-20749	NM_032172	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
49163	chr12	14963671	14963930	+	0	NA	Intergenic	Intergenic	-2199	NM_001321420	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
24282	chr1	236510901	236511100	+	0	NA	Intergenic	AluSz|SINE|Alu	-7214	NM_201545	3964		NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding
118797	chr19	38425721	38426380	+	0	NA	intron (NM_170604, intron 1 of 16)	intron (NM_170604, intron 1 of 16)	169	NM_001146202	115727		NM_052949	ENSG00000171777	RASGRP4	-	RAS guanyl releasing protein 4	protein-coding
158717	chr3	8363171	8363330	+	0	NA	intron (NR_033378, intron 3 of 3)	MLT1J2|LTR|ERVL-MaLR	138408	NR_033378	100288428		NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1	ncRNA
125555	chr2	15612171	15612330	+	0	NA	intron (NM_004939, intron 13 of 25)	SVA_D|Retroposon|SVA	20382	NM_004939	1653		NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding
553	chr1	1245371	1245950	+	0	NA	intron (NM_001014980, intron 1 of 7)	intron (NM_001014980, intron 1 of 7)	1062	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
196554	chr6	44074401	44075230	+	0	NA	promoter-TSS (NR_125864)	promoter-TSS (NR_125864)	-163	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
4676	chr1	22633921	22634580	+	0	NA	promoter-TSS (NR_106742)	promoter-TSS (NR_106742)	-884	NR_106742	102466615		NR_106742	ENSG00000276835	MIR6127	hsa-mir-6127	microRNA 6127	ncRNA
28757	chr10	62021771	62022130	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-27407	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
91568	chr17	5118201	5118800	+	0	NA	intron (NM_001304284, intron 2 of 37)	LTR28B|LTR|ERV1	-2052	NM_001320954	7775		NM_014519	ENSG00000167840	ZNF232	ZSCAN11	zinc finger protein 232	protein-coding
80816	chr16	3460921	3461880	+	0	NA	intron (NM_001317095, intron 1 of 5)	intron (NM_001317095, intron 1 of 5)	3355	NM_001317097	79903		NM_024845	ENSG00000122390	NAA60	HAT4|IBGC9|NAT15|NatF|hNaa60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein-coding
183967	chr5	88677851	88678530	+	0	NA	intron (NR_146284, intron 1 of 3)	CpG	258	NR_152238	645323		NR_015436	ENSG00000245526	MIR9-2HG	ECONEXIN|EyeLinc1|LINC00461|NDIME|VISC	MIR9-2 host gene	ncRNA
174577	chr4	40236951	40237650	+	0	NA	intron (NM_001278364, intron 3 of 4)	AluSx1|SINE|Alu	40269	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
107943	chr18	58051801	58052030	+	0	NA	intron (NM_001144964, intron 1 of 30)	intron (NM_001144964, intron 1 of 30)	4689	NM_001144964	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
216078	chr8	10816271	10816430	+	0	NA	intron (NM_001284356, intron 5 of 5)	L1MD2|LINE|L1	9093	NR_031711	100302166		NR_031711	ENSG00000283210	MIR1322	MIRN1322|hsa-mir-1322	microRNA 1322	ncRNA
56468	chr12	116088001	116088400	+	0	NA	intron (NM_015335, intron 4 of 30)	L1MEa|LINE|L1	60454	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
86028	chr16	57531471	57531930	+	0	NA	intron (NM_033212, intron 1 of 8)	L2|LINE|L2	4871	NM_033212	92922		NM_033212	ENSG00000135736	CCDC102A	-	coiled-coil domain containing 102A	protein-coding
89669	chr16	89369601	89369800	+	0	NA	intron (NR_045839, intron 2 of 9)	L1MD2|LINE|L1	49248	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
156990	chr22	42504251	42504830	+	0	NA	intron (NR_027786, intron 6 of 10)	intron (NR_027786, intron 6 of 10)	3961	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
116910	chr19	18784621	18785700	+	0	NA	intron (NM_000095, intron 15 of 18)	intron (NM_000095, intron 15 of 18)	6145	NM_000095	1311		NM_000095	ENSG00000105664	COMP	CTS2|EDM1|EPD1|MED|PSACH|THBS5|TSP-5|TSP5	cartilage oligomeric matrix protein	protein-coding
220091	chr8	94272321	94272580	+	0	NA	Intergenic	Intergenic	-10131	NM_181702	2669		NM_005261	ENSG00000164949	GEM	KIR	GTP binding protein overexpressed in skeletal muscle	protein-coding
139253	chr2	219402771	219403270	+	0	NA	Intergenic	Intergenic	-3013	NM_001319117	23549		NM_012100	ENSG00000123992	DNPEP	ASPEP|DAP	aspartyl aminopeptidase	protein-coding
56100	chr12	110714301	110714730	+	0	NA	Intergenic	Intergenic	-24738	NM_001256413	84329		NM_032369	ENSG00000122986	HVCN1	HV1|VSOP	hydrogen voltage gated channel 1	protein-coding
101741	chr17	69501851	69502150	+	0	NA	promoter-TSS (NM_001330450)	promoter-TSS (NM_001330450)	-262	NM_001330450	5608		NM_002758	ENSG00000108984	MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
129497	chr2	69622771	69623680	+	0	NA	intron (NM_001371577, intron 2 of 14)	LTR12C|LTR|ERV1	20513	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
55392	chr12	104457701	104458100	+	0	NA	intron (NM_018413, intron 1 of 2)	CpG	952	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
21539	chr1	205984171	205984330	+	0	NA	intron (NM_001304839, intron 4 of 4)	intron (NM_001304839, intron 4 of 4)	10189	NM_177403	338382		NM_177403	ENSG00000276600	RAB7B	RAB7	RAB7B, member RAS oncogene family	protein-coding
25531	chr10	7378251	7379000	+	0	NA	intron (NM_001029880, intron 2 of 20)	(TGTG)n|Simple_repeat|Simple_repeat	30716	NM_001018039	57713		NM_020953	ENSG00000198879	SFMBT2	-	Scm like with four mbt domains 2	protein-coding
154443	chr22	35371551	35372480	+	0	NA	Intergenic	Intergenic	-9081	NM_002133	3162		NM_002133	ENSG00000100292	HMOX1	HMOX1D|HO-1|HSP32|bK286B10	heme oxygenase 1	protein-coding
155045	chr22	37491151	37492130	+	0	NA	intron (NM_014550, intron 19 of 19)	GA-rich|Low_complexity|Low_complexity	-5253	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
125389	chr2	11446801	11447000	+	0	NA	intron (NR_103490, intron 4 of 4)	L1M3b|LINE|L1	19261	NM_001278276	1876		NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
94962	chr17	32138671	32139450	+	0	NA	Intergenic	Intergenic	-3394	NM_001033567	55288		NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding
165598	chr3	101657351	101657650	+	0	NA	intron (NM_014415, intron 6 of 10)	AluSx3|SINE|Alu	-18930	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
71652	chr14	106830621	106831630	+	0	NA	Intergenic	AluYa5|SINE|Alu	19874	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
98557	chr17	47696771	47697730	+	0	NA	intron (NM_014726, intron 3 of 8)	intron (NM_014726, intron 3 of 8)	1986	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
21768	chr1	206917821	206918780	+	0	NA	intron (NM_001193338, intron 1 of 6)	L2|LINE|L2	3641	NM_001193338	9214		NM_005449	ENSG00000162894	FCMR	FAIM3|FcmuR|IgM FcR|TOSO	Fc mu receptor	protein-coding
20066	chr1	185681101	185681330	+	0	NA	Intergenic	Intergenic	-52727	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
127699	chr2	43219401	43220760	+	0	NA	Intergenic	Intergenic	6526	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
146991	chr20	53382921	53383180	+	0	NA	intron (NM_173485, intron 2 of 2)	AluSx|SINE|Alu	-169720	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
99374	chr17	49952321	49953130	+	0	NA	Intergenic	Intergenic	-16465	NM_138281	1748		NM_001934	ENSG00000108813	DLX4	BP1|DLX7|DLX8|DLX9|OFC15	distal-less homeobox 4	protein-coding
17952	chr1	160401701	160401900	+	0	NA	intron (NM_020335, intron 1 of 7)	intron (NM_020335, intron 1 of 7)	1236	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
236492	chrX	71698351	71699250	+	0	NA	intron (NR_034005, intron 1 of 2)	intron (NR_034005, intron 1 of 2)	1604	NR_034004	100132741		NR_034004		LOC100132741	-	uncharacterized LOC100132741	ncRNA
82011	chr16	11919121	11919580	+	0	NA	Intergenic	AluSc|SINE|Alu	-2696	NM_001130007	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
209702	chr7	84092201	84092680	+	0	NA	intron (NM_006080, intron 4 of 16)	intron (NM_006080, intron 4 of 16)	102349	NM_006080	10371		NM_006080	ENSG00000075213	SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	semaphorin 3A	protein-coding
238641	chrX	153971701	153973630	+	0	NA	promoter-TSS (NM_003492)	promoter-TSS (NM_003492)	-89	NM_003492	8269		NM_003492	ENSG00000177854	TMEM187	CXorf12|DXS9878E|ITBA1	transmembrane protein 187	protein-coding
194452	chr6	33173801	33174000	+	0	NA	exon (NM_080679, exon 31 of 63).6	exon (NM_080679, exon 31 of 63).6	18567	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
145226	chr20	38918001	38918430	+	0	NA	exon (NM_015568, exon 11 of 11)	exon (NM_015568, exon 11 of 11)	-8202	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
72236	chr15	30424621	30424880	+	0	NA	Intergenic	Intergenic	-10490	NM_001282484	101059918		NM_001282484	ENSG00000186399	GOLGA8R	-	golgin A8 family member R	protein-coding
219425	chr8	71831351	71831530	+	0	NA	Intergenic	Intergenic	-11683	NR_033652	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
180248	chr5	1642671	1643930	+	0	NA	Intergenic	AluY|SINE|Alu	-9295	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
112241	chr19	5722371	5722530	+	0	NA	intron (NM_152784, intron 1 of 21)	MIRc|SINE|MIR	1813	NM_152784	257062		NM_152784	ENSG00000174898	CATSPERD	TMEM146	cation channel sperm associated auxiliary subunit delta	protein-coding
132377	chr2	105769301	105769850	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	24512	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
202379	chr6	157820901	157821530	+	0	NA	Intergenic	Intergenic	-2031	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
4070	chr1	19068371	19069150	+	0	NA	Intergenic	Intergenic	-112084	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
60680	chr13	43399321	43399400	+	0	NA	intron (NM_001347970, intron 4 of 15)	intron (NM_001347970, intron 4 of 15)	-49492	NR_120399	100874130		NR_120399		ENOX1-AS2	-	ENOX1 antisense RNA 2	ncRNA
163844	chr3	52479921	52480330	+	0	NA	intron (NM_001276294, intron 12 of 13)	intron (NM_001276294, intron 12 of 13)	-15213	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
99	chr1	433301	433700	+	0	NA	Intergenic	L1PA8|LINE|L1	18178	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
92139	chr17	7629121	7629530	+	0	NA	promoter-TSS (NM_001040)	promoter-TSS (NM_001040)	-769	NM_001146281	6462		NM_001040	ENSG00000129214	SHBG	ABP|SBP|TEBG	sex hormone binding globulin	protein-coding
76540	chr15	75195701	75196100	+	0	NA	Intergenic	Intergenic	-5982	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
199365	chr6	116218021	116218430	+	0	NA	intron (NM_152729, intron 6 of 11)	intron (NM_152729, intron 6 of 11)	35850	NM_021648	23270		NM_021648	ENSG00000187189	TSPYL4	dJ486I3.2	TSPY like 4	protein-coding
57431	chr12	121888451	121889930	+	0	NA	promoter-TSS (NM_001171993)	promoter-TSS (NM_001171993)	400	NR_048555	5715		NM_002813	ENSG00000110801	PSMD9	Rpn4|p27	proteasome 26S subunit, non-ATPase 9	protein-coding
129836	chr2	72826871	72827030	+	0	NA	promoter-TSS (NM_015189)	promoter-TSS (NM_015189)	-917	NR_135773	23233		NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2|SEMDJL3	exocyst complex component 6B	protein-coding
90062	chr16	89950101	89950480	+	0	NA	5' UTR (NM_001242820, exon 3 of 14)	5' UTR (NM_001242820, exon 3 of 14)	870	NM_001242819	54849		NM_017702	ENSG00000140995	DEF8	-	differentially expressed in FDCP 8 homolog	protein-coding
226709	chr9	75128551	75128930	+	0	NA	intron (NM_012383, intron 3 of 9)	L1MC5|LINE|L1	40226	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
24966	chr10	2792001	2792250	+	0	NA	Intergenic	Intergenic	274808	NR_160682	101927824		NR_160681		PFKP-DT	-	PFKP divergent transcript	ncRNA
129511	chr2	69641771	69642420	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	1643	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
177518	chr4	118398351	118398450	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-45397	NM_003619	8492		NM_003619	ENSG00000164099	PRSS12	BSSP-3|BSSP3|MRT1	serine protease 12	protein-coding
156646	chr22	41630021	41630280	+	0	NA	intron (NM_001288977, intron 3 of 12)	AluSc5|SINE|Alu	8855	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
36263	chr11	3787401	3787600	+	0	NA	intron (NR_157590, intron 1 of 31)	AluSx|SINE|Alu	10046	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
37466	chr11	18321801	18323250	+	0	NA	promoter-TSS (NM_005316)	promoter-TSS (NM_005316)	-42	NM_005316	2965		NM_005316	ENSG00000110768	GTF2H1	BTF2|P62|TFB1|TFIIH	general transcription factor IIH subunit 1	protein-coding
8908	chr1	43971301	43972530	+	0	NA	exon (NM_001319167, exon 4 of 6)	exon (NM_001319167, exon 4 of 6)	1905	NM_001319170	1802		NM_001384	ENSG00000132768	DPH2	DEDSSH2|DPH2L2	diphthamide biosynthesis 2	protein-coding
225219	chr9	34178321	34179900	+	0	NA	promoter-TSS (NM_001171203)	promoter-TSS (NM_001171203)	67	NR_033243	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
15528	chr1	150516901	150517100	+	0	NA	intron (NR_051960, intron 1 of 1)	intron (NR_051960, intron 1 of 1)	1243	NR_051960	100874054		NR_051960		FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA
63616	chr14	20626411	20626950	+	0	NA	Intergenic	Intergenic	15011	NM_001001968	341799		NM_001001968	ENSG00000181803	OR6S1	OR14-37|OR6S1Q	olfactory receptor family 6 subfamily S member 1	protein-coding
64866	chr14	35296901	35297550	+	0	NA	intron (NM_001282232, intron 1 of 6)	AluY|SINE|Alu	4843	NM_002791	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
202073	chr6	154242801	154243350	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	87006	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
1045	chr1	1885371	1885750	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluY|SINE|Alu	5527	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
200375	chr6	134235971	134236330	+	0	NA	intron (NM_001143676, intron 2 of 13)	intron (NM_001143676, intron 2 of 13)	-58289	NM_001143677	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
40821	chr11	64934351	64934880	+	0	NA	TTS (NM_006244)	TTS (NM_006244)	1278	NM_130769	170589		NM_130769	ENSG00000149735	GPHA2	A2|GPA2|ZSIG51	glycoprotein hormone subunit alpha 2	protein-coding
132520	chr2	106130571	106131180	+	0	NA	intron (NR_165308, intron 6 of 14)	intron (NR_165308, intron 6 of 14)	8006	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
59780	chr13	30159551	30159830	+	0	NA	Intergenic	LTR84b|LTR|ERVL	-6616	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
67575	chr14	71555501	71556600	+	0	NA	intron (NM_001354289, intron 5 of 23)	Tigger1|DNA|TcMar-Tigger	-30248	NM_001284246	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
200840	chr6	138161171	138162200	+	0	NA	promoter-TSS (NM_020340)	promoter-TSS (NM_020340)	-254	NM_020340	57221		NM_020340	ENSG00000112379	ARFGEF3	A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1	ARFGEF family member 3	protein-coding
79110	chr16	202721	202980	+	0	NA	intron (NM_018032, intron 5 of 8)	L1MC|LINE|L1	22391	NM_005331	3049		NM_005331	ENSG00000086506	HBQ1	HBQ	hemoglobin subunit theta 1	protein-coding
108995	chr18	79695221	79695680	+	0	NA	intron (NM_001318511, intron 2 of 11)	intron (NM_001318511, intron 2 of 11)	14020	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
58837	chr12	132872751	132873650	+	0	NA	intron (NM_018223, intron 3 of 17)	intron (NM_018223, intron 3 of 17)	14405	NM_001161346	55743		NM_018223	ENSG00000072609	CHFR	RNF116|RNF196	checkpoint with forkhead and ring finger domains	protein-coding
118779	chr19	38391651	38392280	+	0	NA	non-coding (NR_073032, exon 2 of 6)	non-coding (NR_073032, exon 2 of 6)	1673	NR_073032	399473		NM_001039616	ENSG00000188766	SPRED3	Eve-3|spred-3	sprouty related EVH1 domain containing 3	protein-coding
134340	chr2	136116901	136117600	+	0	NA	intron (NM_001348056, intron 1 of 2)	CpG	619	NM_001348060	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
168433	chr3	142574571	142575430	+	0	NA	intron (NM_001184, intron 1 of 46)	L2|LINE|L2	3733	NM_001354579	545		NM_001184	ENSG00000175054	ATR	FCTCS|FRP1|MEC1|SCKL|SCKL1	ATR serine/threonine kinase	protein-coding
134875	chr2	148764651	148765130	+	0	NA	intron (NM_015630, intron 6 of 13)	intron (NM_015630, intron 6 of 13)	-110337	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
176107	chr4	83012071	83014230	+	0	NA	promoter-TSS (NM_001115007)	promoter-TSS (NM_001115007)	-209	NM_001115007	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
516	chr1	1210851	1210950	+	0	NA	TTS (NM_003327)	TTS (NM_003327)	3253	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
109354	chr19	620921	621600	+	0	NA	exon (NM_005035, exon 10 of 21)	exon (NM_005035, exon 10 of 21)	12277	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
47885	chr12	6702421	6702830	+	0	NA	Intergenic	AluSz|SINE|Alu	-1810	NM_153685	196500		NM_153685	ENSG00000139200	PIANP	C12orf53|LEDA1|PANP|leda-1	PILR alpha associated neural protein	protein-coding
174599	chr4	40260521	40260780	+	0	NA	Intergenic	AluSq2|SINE|Alu	-46535	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
65010	chr14	38256371	38256550	+	0	NA	promoter-TSS (NM_175060)	promoter-TSS (NM_175060)	-367	NM_175060	161198		NM_175060	ENSG00000176435	CLEC14A	C14orf27|CEG1|EGFR-5	C-type lectin domain containing 14A	protein-coding
151802	chr22	18202171	18202700	+	0	NA	intron (NR_136570, intron 1 of 11)	HSATI|Satellite|Satellite	3474	NR_136570	100996415		NR_136570		FAM230D	LINC02592	family with sequence similarity 230 member D	ncRNA
40128	chr11	62828251	62828600	+	0	NA	intron (NM_001244666, intron 2 of 10)	intron (NM_001244666, intron 2 of 10)	3626	NM_001244666	6811		NM_003164	ENSG00000162236	STX5	CDG2AA|SED5|STX5A	syntaxin 5	protein-coding
73291	chr15	41869621	41869880	+	0	NA	intron (NM_016642, intron 32 of 67)	intron (NM_016642, intron 32 of 67)	-3199	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA
54207	chr12	79891501	79891700	+	0	NA	intron (NM_001143885, intron 2 of 25)	MLT1F2|LTR|ERVL-MaLR	22311	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
147032	chr20	53609361	53610580	+	0	NA	intron (NR_134576, intron 1 of 2)	intron (NR_134576, intron 1 of 2)	1616	NR_134576	105372672		NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
104574	chr17	81378921	81379180	+	0	NA	intron (NR_164137, intron 3 of 3)	intron (NR_164137, intron 3 of 3)	6075	NR_164138	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
125083	chr2	9694471	9694830	+	0	NA	Intergenic	L2c|LINE|L2	-63653	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
124485	chr19	58561671	58561830	+	0	NA	TTS (NM_001267033)	TTS (NM_001267033)	2564	NR_027334	100131691		NR_027334	ENSG00000267858	MZF1-AS1	-	MZF1 antisense RNA 1	ncRNA
137173	chr2	191122971	191123730	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	27644	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
128008	chr2	47039051	47039480	+	0	NA	intron (NM_020458, intron 15 of 19)	intron (NM_020458, intron 15 of 19)	-97410	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
95577	chr17	36945871	36947080	+	0	NA	Intergenic	Intergenic	-2479	NM_012138	26574		NM_012138	ENSG00000275700	AATF	BFR2|CHE-1|CHE1|DED	apoptosis antagonizing transcription factor	protein-coding
40783	chr11	64883351	64884380	+	0	NA	Intergenic	Intergenic	-4152	NM_001282445	10938		NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH domain containing 1	protein-coding
230158	chr9	127764021	127764650	+	0	NA	intron (NM_170600, intron 2 of 11)	L2a|LINE|L2	-1895	NM_001142531	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
216934	chr8	22815351	22815650	+	0	NA	intron (NM_001363233, intron 4 of 6)	intron (NM_001363233, intron 4 of 6)	-62472	NR_125433	101929237		NR_125433	ENSG00000248738	LOC101929237	-	uncharacterized LOC101929237	ncRNA
19967	chr1	184927921	184928380	+	0	NA	intron (NM_052966, intron 1 of 13)	L1MA3|LINE|L1	46358	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
117121	chr19	19212871	19213100	+	0	NA	intron (NM_004386, intron 1 of 14)	intron (NM_004386, intron 1 of 14)	1027	NM_004386	1463		NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
189993	chr5	177463571	177463930	+	0	NA	intron (NM_004395, intron 8 of 13)	L1MC5a|LINE|L1	-1324	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
35698	chr11	1921951	1922280	+	0	NA	promoter-TSS (NM_001367849)	promoter-TSS (NM_001367849)	-716	NM_001367847	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
58014	chr12	124388751	124389900	+	0	NA	intron (NM_001077261, intron 18 of 47)	CpG	-52083	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
14500	chr1	144559901	144561330	+	0	NA	Intergenic	Intergenic	-8672	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
32756	chr10	104323371	104323530	+	0	NA	promoter-TSS (NR_120622)	promoter-TSS (NR_120622)	86	NR_120622	101927472		NR_120622		ITPRIP-AS1	-	ITPRIP antisense RNA 1	ncRNA
208145	chr7	64313421	64314780	+	0	NA	5' UTR (NM_001294255, exon 1 of 3)	5' UTR (NM_001294255, exon 1 of 3)	139	NM_001170905	728927		NM_001170905	ENSG00000234444	ZNF736	-	zinc finger protein 736	protein-coding
124618	chr2	1164721	1164980	+	0	NA	intron (NM_018968, intron 6 of 16)	intron (NM_018968, intron 6 of 16)	-213458	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
193075	chr6	28730121	28730380	+	0	NA	Intergenic	Intergenic	-75775	NR_135285	387055		NR_135285	ENSG00000235570	LINC00533	C6orf38|C6orf39	long intergenic non-protein coding RNA 533	ncRNA
165566	chr3	101520821	101522000	+	0	NA	intron (NR_036433, intron 1 of 1)	MER89|LTR|ERV1	2543	NR_036433	131909		NR_036433		ARB2BP	FAM172B|FAM172BP	ARB2 family member B, pseudogene	pseudo
73562	chr15	44319351	44319690	+	0	NA	intron (NM_177974, intron 1 of 8)	intron (NM_177974, intron 1 of 8)	30801	NM_177974	113201		NM_138423	ENSG00000166734	GOLM2	CASC4|H63	golgi membrane protein 2	protein-coding
195786	chr6	40788701	40789500	+	0	NA	Intergenic	Intergenic	-201736	NM_020737	57497		NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
111677	chr19	4260451	4261080	+	0	NA	intron (NM_018074, intron 5 of 7)	intron (NM_018074, intron 5 of 7)	13685	NM_018074	55702		NM_018074	ENSG00000105248	YJU2	CCDC94	YJU2 splicing factor homolog	protein-coding
96194	chr17	39751121	39751380	+	0	NA	Intergenic	Intergenic	11283	NM_001242443	2886		NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding
226631	chr9	73184951	73185600	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	33410	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
140354	chr2	232692871	232693480	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-4156	NM_001103148	26058		NM_015575	ENSG00000204120	GIGYF2	GYF2|PARK11|PERQ2|PERQ3|TNRC15	GRB10 interacting GYF protein 2	protein-coding
167722	chr3	131019901	131020300	+	0	NA	intron (NM_001288950, intron 3 of 6)	MIRb|SINE|MIR	6725	NM_014065	28990		NM_014065	ENSG00000034533	ASTE1	HT001	asteroid homolog 1	protein-coding
89003	chr16	87964751	87965280	+	0	NA	intron (NM_001173542, intron 1 of 12)	L2a|LINE|L2	-5003	NM_001173543	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
70155	chr14	100294501	100295100	+	0	NA	intron (NM_152333, intron 1 of 2)	intron (NM_152333, intron 1 of 2)	11644	NM_001291814	123096		NM_152333	ENSG00000197119	SLC25A29	C14orf69|CACL|ORNT3	solute carrier family 25 member 29	protein-coding
41278	chr11	65851201	65852090	+	0	NA	exon (NM_152760, exon 9 of 13)	exon (NM_152760, exon 9 of 13)	6535	NM_005507	1072		NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding
183948	chr5	88143421	88144000	+	0	NA	Intergenic	Intergenic	125135	NM_153354	153396		NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
113697	chr19	10414701	10414980	+	0	NA	Intergenic	AluJb|SINE|Alu	-1933	NM_001243121	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
153617	chr22	28442151	28442880	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-17354	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
18384	chr1	161388301	161388900	+	0	NA	Intergenic	AluSg|SINE|Alu	-20724	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
156679	chr22	41660671	41661300	+	0	NA	intron (NM_001288976, intron 11 of 12)	AluSc5|SINE|Alu	27882	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
32083	chr10	101127071	101127430	+	0	NA	intron (NR_130724, intron 1 of 2)	intron (NR_130724, intron 1 of 2)	3896	NR_130723	100038246		NM_001085398	ENSG00000236311	TLX1NB	APT-B7|TD1|TDI	TLX1 neighbor	ncRNA
10692	chr1	74689871	74690130	+	0	NA	Intergenic	Intergenic	-16208	NM_001002912	127254		NM_001002912	ENSG00000178965	ERICH3	C1orf173	glutamate rich 3	protein-coding
106828	chr18	24006851	24007150	+	0	NA	intron (NR_110796, intron 2 of 5)	intron (NR_110796, intron 2 of 5)	-7754	NM_001243425	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
53537	chr12	67284651	67285150	+	0	NA	intron (NM_001329674, intron 3 of 15)	intron (NM_001329674, intron 3 of 15)	15542	NM_001329676	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
191095	chr6	3847471	3847930	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-1673	NM_012135	26240		NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
164342	chr3	58007821	58010980	+	0	NA	intron (NM_001164319, intron 1 of 44)	CpG	978	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
204526	chr7	4802051	4802150	+	0	NA	intron (NM_018059, intron 11 of 14)	intron (NM_018059, intron 11 of 14)	-13461	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
227018	chr9	83820051	83820150	+	0	NA	Intergenic	L2|LINE|L2	-2263	NM_001135953	80318		NM_025211	ENSG00000165113	GKAP1	FKSG21|GKAP42	G kinase anchoring protein 1	protein-coding
61649	chr13	73921871	73922030	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	211979	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
65641	chr14	52317501	52317730	+	0	NA	intron (NM_000956, intron 1 of 1)	MamRep1879|DNA|hAT-Tip100?	3303	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
92906	chr17	16453071	16454150	+	0	NA	intron (NM_001113567, intron 2 of 3)	MIR|SINE|MIR	12384	NR_003054	692106		NR_003054	ENSG00000277512	SNORD65	HBII-135|SNORD65A	small nucleolar RNA, C/D box 65	snoRNA
41758	chr11	66690851	66691350	+	0	NA	intron (NM_006946, intron 27 of 37)	AluSp|SINE|Alu	-13213	NM_001286135	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
37280	chr11	14688201	14688700	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	44646	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
40056	chr11	62724901	62725380	+	0	NA	intron (NM_001079559, intron 1 of 13)	intron (NM_001079559, intron 1 of 13)	2244	NR_037946	100534595		NR_037946	ENSG00000234857	HNRNPUL2-BSCL2	-	HNRNPUL2-BSCL2 readthrough (NMD candidate)	ncRNA
127970	chr2	46702021	46702680	+	0	NA	intron (NM_144949, intron 1 of 1)	intron (NM_144949, intron 1 of 1)	3055	NM_144949	9655		NM_014011	ENSG00000171150	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
195264	chr6	36442651	36443660	+	0	NA	promoter-TSS (NM_152990)	promoter-TSS (NM_152990)	155	NR_104480	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
202346	chr6	157563721	157563980	+	0	NA	intron (NM_024630, intron 2 of 8)	intron (NM_024630, intron 2 of 8)	34718	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
126265	chr2	27135821	27136280	+	0	NA	TTS (NM_178553)	TTS (NM_178553)	-1375	NR_138479	10113		NM_013388	ENSG00000138073	PREB	SEC12	prolactin regulatory element binding	protein-coding
9655	chr1	52630421	52630680	+	0	NA	Intergenic	MIRb|SINE|MIR	-2618	NR_135156	348378		NM_001042693	ENSG00000182183	SHISAL2A	FAM159A|PRO7171|WWLS2783	shisa like 2A	protein-coding
162522	chr3	48592771	48593130	+	0	NA	intron (NM_000094, intron 6 of 118)	intron (NM_000094, intron 6 of 118)	2379	NM_000094	1294		NM_000094	ENSG00000114270	COL7A1	EBD1|EBDCT|EBR1|NDNC8	collagen type VII alpha 1 chain	protein-coding
84122	chr16	29676021	29676680	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-2658	NM_001318249	23475		NM_014298	ENSG00000103485	QPRT	HEL-S-90n|QPRTase	quinolinate phosphoribosyltransferase	protein-coding
170417	chr3	185585151	185585250	+	0	NA	Intergenic	AluJb|SINE|Alu	-1095	NM_021627	59343		NM_021627	ENSG00000163904	SENP2	AXAM2|SMT3IP2	SUMO specific peptidase 2	protein-coding
224393	chr9	13279401	13279600	+	0	NA	5' UTR (NM_001375427, exon 1 of 43)	5' UTR (NM_001375427, exon 1 of 43)	192	NM_001261406	8777		NM_003829	ENSG00000107186	MPDZ	HYC2|MUPP1	multiple PDZ domain crumbs cell polarity complex component	protein-coding
32276	chr10	102106671	102107730	+	0	NA	3' UTR (NM_003893, exon 11 of 11)	3' UTR (NM_003893, exon 11 of 11)	7802	NM_003893	8861		NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding
181969	chr5	55108921	55109180	+	0	NA	intron (NM_006144, intron 4 of 4)	intron (NM_006144, intron 4 of 4)	6404	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
86398	chr16	66713651	66714150	+	0	NA	Intergenic	AluSq2|SINE|Alu	-17157	NM_178818	146223		NM_178818	ENSG00000183723	CMTM4	CKLFSF4	CKLF like MARVEL transmembrane domain containing 4	protein-coding
13230	chr1	112673451	112674000	+	0	NA	promoter-TSS (NM_001321324)	promoter-TSS (NM_001321324)	-587	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
236985	chrX	101417851	101418730	+	0	NA	promoter-TSS (NR_028407)	promoter-TSS (NR_028407)	12	NR_028407	100131755		NM_152583	ENSG00000196440	ARMCX4	CXorf35|GASP4	armadillo repeat containing X-linked 4	protein-coding
137720	chr2	197697321	197698400	+	0	NA	Intergenic	L1M2|LINE|L1	-7509	NM_138395	92935		NM_138395	ENSG00000247626	MARS2	COXPD25|MetRS|mtMetRS	methionyl-tRNA synthetase 2, mitochondrial	protein-coding
194920	chr6	34885921	34886380	+	0	NA	intron (NM_005643, intron 1 of 4)	AluSg|SINE|Alu	1892	NM_005643	6882		NM_005643	ENSG00000064995	TAF11	MGC:15243|PRO2134|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding
55022	chr12	96380951	96381250	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	19339	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
223625	chr8	144323951	144324530	+	0	NA	intron (NM_012079, intron 1 of 16)	intron (NM_012079, intron 1 of 16)	2612	NM_012079	8694		NM_012079	ENSG00000185000	DGAT1	ARAT|ARGP1|DGAT|DIAR7	diacylglycerol O-acyltransferase 1	protein-coding
170591	chr3	186906721	186906980	+	0	NA	Intergenic	L1PA7|LINE|L1	-23676	NM_173217	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
85462	chr16	50672771	50672930	+	0	NA	3' UTR (NM_182854, exon 4 of 4)	3' UTR (NM_182854, exon 4 of 4)	3995	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
44956	chr11	116795751	116795850	+	0	NA	Intergenic	Intergenic	-3380	NM_001166598	116519		NM_052968	ENSG00000110243	APOA5	APOAV|RAP3	apolipoprotein A5	protein-coding
71725	chr15	20354501	20355030	+	0	NA	Intergenic	AluJr|SINE|Alu	72021	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
78862	chr15	100349501	100350600	+	0	NA	non-coding (NR_028140, exon 1 of 3)	non-coding (NR_028140, exon 1 of 3)	183	NR_028140	388182		NM_207383	ENSG00000189419	SPATA41	HSD47	spermatogenesis associated 41	ncRNA
22902	chr1	225875601	225876600	+	0	NA	intron (NM_014698, intron 3 of 24)	intron (NM_014698, intron 3 of 24)	6280	NM_014698	9725		NM_014698	ENSG00000196187	TMEM63A	HLD19|KIAA0792	transmembrane protein 63A	protein-coding
87919	chr16	79264451	79264550	+	0	NA	Intergenic	5S|rRNA|rRNA	336237	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
45494	chr11	118624321	118624580	+	0	NA	intron (NM_001144759, intron 4 of 20)	intron (NM_001144759, intron 4 of 20)	16835	NM_001144759	23187		NM_015157	ENSG00000019144	PHLDB1	LL5A|LL5alpha|OI23	pleckstrin homology like domain family B member 1	protein-coding
30522	chr10	79350651	79351030	+	0	NA	intron (NM_005729, intron 3 of 5)	intron (NM_005729, intron 3 of 5)	3371	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
153789	chr22	29596971	29598250	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-5946	NM_016418	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
114245	chr19	11507451	11507900	+	0	NA	intron (NM_001142464, intron 5 of 6)	intron (NM_001142464, intron 5 of 6)	-1836	NM_138783	115950		NM_138783	ENSG00000161914	ZNF653	E430039K05Rik|ZIP67	zinc finger protein 653	protein-coding
22371	chr1	218014671	218014830	+	0	NA	Intergenic	L1HS|LINE|L1	-28755	NR_110794	101929631		NR_110794	ENSG00000232100	LINC01653	-	long intergenic non-protein coding RNA 1653	ncRNA
79451	chr16	718771	718930	+	0	NA	3' UTR (NM_024042, exon 4 of 4)	3' UTR (NM_024042, exon 4 of 4)	-2296	NM_001271285	65990		NM_023933	ENSG00000103254	ANTKMT	ANT-KMT|C16orf24|FAM173A	adenine nucleotide translocase lysine methyltransferase	protein-coding
132871	chr2	111120061	111123330	+	0	NA	intron (NM_207003, intron 1 of 4)	CpG-16420	781	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
89178	chr16	88554801	88555200	+	0	NA	Intergenic	Intergenic	6983	NR_146877	400555		NM_001001682		ZC3H18-AS1	C16orf85|LINC00859	ZC3H18 antisense RNA 1 (head to head)	ncRNA
142262	chr20	3169451	3169550	+	0	NA	intron (NM_001282533, intron 1 of 5)	intron (NM_001282533, intron 1 of 5)	4049	NM_001365618	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
48949	chr12	12734821	12735630	+	0	NA	intron (NM_001130415, intron 1 of 1)	FLAM_A|SINE|Alu	9308	NM_001130415	81575		NM_030817	ENSG00000178878	APOLD1	BDVAS|VERGE	apolipoprotein L domain containing 1	protein-coding
62802	chr13	109743751	109744130	+	0	NA	Intergenic	Intergenic	15666	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
167895	chr3	136145301	136145700	+	0	NA	3' UTR (NM_001190447, exon 13 of 13)	3' UTR (NM_001190447, exon 13 of 13)	48968	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
8434	chr1	40630571	40630980	+	0	NA	intron (NM_014747, intron 5 of 7)	intron (NM_014747, intron 5 of 7)	34907	NM_014747	9783		NM_014747	ENSG00000117016	RIMS3	NIM3|RIM 3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding
5683	chr1	26356171	26356600	+	0	NA	Intergenic	MIRb|SINE|MIR	-2255	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
183589	chr5	80186651	80187430	+	0	NA	intron (NM_001174072, intron 2 of 11)	AluSx|SINE|Alu	69008	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
216162	chr8	11703851	11704500	+	0	NA	promoter-TSS (NM_002052)	promoter-TSS (NM_002052)	-27	NM_001308093	2626		NM_002052	ENSG00000136574	GATA4	ASD2|TACHD|TOF|VSD1	GATA binding protein 4	protein-coding
3200	chr1	13747721	13748080	+	0	NA	intron (NM_001135610, intron 5 of 7)	L1MC4|LINE|L1	-1515	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
86156	chr16	57756471	57756650	+	0	NA	intron (NM_005886, intron 19 of 19)	intron (NM_005886, intron 19 of 19)	15792	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
112823	chr19	7519371	7519530	+	0	NA	exon (NM_018083, exon 2 of 2)	exon (NM_018083, exon 2 of 2)	-3174	NM_020533	57192		NM_020533	ENSG00000090674	MCOLN1	LECD|MG-2|ML1|ML4|MLIV|MST080|MSTP080|TRP-ML1|TRPM-L1|TRPML1	mucolipin TRP cation channel 1	protein-coding
205471	chr7	17304971	17305750	+	0	NA	intron (NM_001621, intron 1 of 10)	intron (NM_001621, intron 1 of 10)	6708	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
7149	chr1	32221871	32223250	+	0	NA	promoter-TSS (NR_133635)	promoter-TSS (NR_133635)	-189	NR_133636	56063		NM_019118	ENSG00000160055	TMEM234	AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7	transmembrane protein 234	protein-coding
89871	chr16	89640901	89641630	+	0	NA	Intergenic	LTR13_|LTR|ERVK	16443	NM_002768	5119		NM_002768	ENSG00000131165	CHMP1A	CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A	charged multivesicular body protein 1A	protein-coding
158332	chr22	50444871	50446000	+	0	NA	TTS (NM_001365836)	TTS (NM_001365836)	29600	NM_002972	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
71917	chr15	22785921	22787430	+	0	NA	promoter-TSS (NM_144599)	promoter-TSS (NM_144599)	31	NM_144599	123606		NM_144599	ENSG00000170113	NIPA1	FSP3|SLC57A1|SPG6	NIPA magnesium transporter 1	protein-coding
172718	chr4	2805521	2805780	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	-6641	NM_001145855	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
93857	chr17	21005371	21005930	+	0	NA	intron (NM_015276, intron 10 of 12)	intron (NM_015276, intron 10 of 12)	37361	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
92337	chr17	8160601	8161100	+	0	NA	3' UTR (NM_014232, exon 5 of 5)	3' UTR (NM_014232, exon 5 of 5)	2026	NM_001330125	6844		NM_014232	ENSG00000220205	VAMP2	NEDHAHM|SYB2|VAMP-2	vesicle associated membrane protein 2	protein-coding
17617	chr1	156925271	156925730	+	0	NA	intron (NM_144702, intron 5 of 14)	L2c|LINE|L2	4868	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
83705	chr16	28493721	28495130	+	0	NA	promoter-TSS (NM_018690)	promoter-TSS (NM_018690)	-218	NM_018690	55911		NM_018690	ENSG00000184730	APOBR	APOB100R|APOB48R	apolipoprotein B receptor	protein-coding
124992	chr2	9425421	9425680	+	0	NA	intron (NM_001321834, intron 1 of 17)	L2b|LINE|L2	1896	NM_016207	51692		NM_016207	ENSG00000119203	CPSF3	CPSF-73|CPSF73|NEDMHS|NEDMHSN	cleavage and polyadenylation specific factor 3	protein-coding
210456	chr7	100123921	100124180	+	0	NA	intron (NM_152755, intron 4 of 5)	AluSg|SINE|Alu	-2917	NM_203397	255374		NM_203397	ENSG00000214309	MBLAC1	-	metallo-beta-lactamase domain containing 1	protein-coding
183660	chr5	80307301	80307830	+	0	NA	Intergenic	AluY|SINE|Alu	-7087	NR_004845	644936		NR_004845		LOC644936	-	actin beta pseudogene	pseudo
128464	chr2	55694721	55695600	+	0	NA	Intergenic	AluSc|SINE|Alu	-1316	NM_033109	87178		NM_033109	ENSG00000138035	PNPT1	COXPD13|DFNB70|OLD35|PNPASE|SCA25|old-35	polyribonucleotide nucleotidyltransferase 1	protein-coding
101412	chr17	67388571	67389480	+	0	NA	intron (NM_181671, intron 1 of 9)	MLT1E|LTR|ERVL-MaLR	11744	NM_181671	26207		NM_012417	ENSG00000154217	PITPNC1	M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1	phosphatidylinositol transfer protein cytoplasmic 1	protein-coding
46893	chr11	134057971	134058730	+	0	NA	Intergenic	Intergenic	-10575	NM_001205329	83700		NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
224142	chr9	4760751	4761250	+	0	NA	Intergenic	Intergenic	-18957	NM_001199853	50808		NM_016282	ENSG00000147853	AK3	AK3L1|AK6|AKL3L|AKL3L1|FIX	adenylate kinase 3	protein-coding
199607	chr6	119321901	119323500	+	0	NA	intron (NM_005907, intron 2 of 12)	intron (NM_005907, intron 2 of 12)	27061	NM_005907	4121		NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding
111858	chr19	4600501	4600800	+	0	NA	Intergenic	Intergenic	-38866	NM_152362	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
46922	chr11	134272921	134273180	+	0	NA	Intergenic	Intergenic	-3329	NM_001080407	112937		NM_138416	ENSG00000166105	GLB1L3	-	galactosidase beta 1 like 3	protein-coding
229206	chr9	114754601	114755100	+	0	NA	Intergenic	Intergenic	37680	NM_001204344	9966		NM_005118	ENSG00000181634	TNFSF15	TL1|TL1A|TNLG1B|VEGI|VEGI192A	TNF superfamily member 15	protein-coding
11195	chr1	88342251	88342350	+	0	NA	Intergenic	L1PA2|LINE|L1	-341844	NM_001320707	5586		NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding
2452	chr1	9636151	9636450	+	0	NA	Intergenic	AluSz6|SINE|Alu	-15431	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
82640	chr16	19095071	19095400	+	0	NA	Intergenic	MER57B2|LTR|ERV1	-18729	NR_028028	162073		NM_001034841	ENSG00000205730	ITPRIPL2	D1C	ITPRIP like 2	protein-coding
118746	chr19	38321171	38321530	+	0	NA	intron (NM_004823, intron 1 of 2)	intron (NM_004823, intron 1 of 2)	1505	NM_004823	9424		NM_004823	ENSG00000099337	KCNK6	K2p6.1|KCNK8|TOSS|TWIK-2|TWIK2	potassium two pore domain channel subfamily K member 6	protein-coding
5716	chr1	26396151	26397230	+	0	NA	Intergenic	AluYf1|SINE|Alu	-14127	NM_024674	79727		NM_024674	ENSG00000131914	LIN28A	CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A	lin-28 homolog A	protein-coding
43639	chr11	84751471	84751630	+	0	NA	intron (NM_001351274, intron 5 of 26)	intron (NM_001351274, intron 5 of 26)	-30608	NM_001351276	1740		NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding
175815	chr4	77856921	77857530	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-5605	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
11408	chr1	89701051	89701500	+	0	NA	intron (NM_032270, intron 2 of 2)	AluY|SINE|Alu	68155	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
164193	chr3	56825001	56825200	+	0	NA	intron (NM_001289698, intron 2 of 10)	MIRb|SINE|MIR	-23151	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
224099	chr9	4551071	4551430	+	0	NA	intron (NM_004170, intron 2 of 11)	intron (NM_004170, intron 2 of 11)	60782	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
199957	chr6	127932821	127933080	+	0	NA	Intergenic	LTR27C|LTR|ERV1	-14319	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
179300	chr4	177338101	177338500	+	0	NA	intron (NM_018248, intron 4 of 9)	intron (NM_018248, intron 4 of 9)	28426	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
122481	chr19	49557471	49557830	+	0	NA	intron (NM_001270960, intron 4 of 8)	intron (NM_001270960, intron 4 of 8)	22906	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
108482	chr18	70684201	70684400	+	0	NA	Intergenic	Intergenic	-33346	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
11160	chr1	86965251	86965580	+	0	NA	intron (NM_001134492, intron 1 of 4)	intron (NM_001134492, intron 1 of 4)	50780	NM_012262	9653		NM_012262	ENSG00000153936	HS2ST1	NFSRA|dJ604K5.2	heparan sulfate 2-O-sulfotransferase 1	protein-coding
150128	chr21	37562401	37562650	+	0	NA	Intergenic	Intergenic	142226	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
105255	chr17	82433301	82433600	+	0	NA	intron (NM_001369487, intron 5 of 14)	AluJb|SINE|Alu	-14864	NM_024648	79701		NM_024648	ENSG00000181396	OGFOD3	C17orf101	2-oxoglutarate and iron dependent oxygenase domain containing 3	protein-coding
145077	chr20	38645851	38647330	+	0	NA	intron (NM_001164431, intron 12 of 14)	intron (NM_001164431, intron 12 of 14)	44781	NM_001164431	343578		NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
69284	chr14	93076501	93077100	+	0	NA	intron (NM_014216, intron 2 of 10).2	intron (NM_014216, intron 2 of 10).2	9348	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
197409	chr6	73518901	73519400	+	0	NA	promoter-TSS (NR_132980).2	promoter-TSS (NR_132980).2	-712	NR_132981	106635684		NR_132981		SNORD141B	-	small nucleolar RNA, C/D box 141B	snoRNA
34986	chr11	513951	515150	+	0	NA	Intergenic	AluSx3|SINE|Alu	-7308	NM_203387	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
228025	chr9	95879901	95880680	+	0	NA	intron (NM_001375291, intron 1 of 18)	intron (NM_001375291, intron 1 of 18)	-4313	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
22470	chr1	221708911	221710080	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	27405	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
79350	chr16	600821	601130	+	0	NA	intron (NM_001172664, intron 2 of 6)	intron (NM_001172664, intron 2 of 6)	10898	NM_001172665	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
87957	chr16	79639921	79640180	+	0	NA	Intergenic	Intergenic	-39313	NM_001031804	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
161641	chr3	43305951	43306050	+	0	NA	intron (NM_017719, intron 3 of 6)	L1ME3Cz|LINE|L1	19460	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
186923	chr5	139610371	139610730	+	0	NA	intron (NM_003339, intron 2 of 6)	intron (NM_003339, intron 2 of 6)	-36749	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
27486	chr10	32131521	32131930	+	0	NA	Intergenic	MER4E|LTR|ERV1	-75300	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
201480	chr6	148830571	148831700	+	0	NA	intron (NM_005715, intron 1 of 7)	Charlie18a|DNA|hAT-Charlie	84105	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
103843	chr17	79699221	79699930	+	0	NA	Intergenic	Intergenic	7674	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	mir-4739	microRNA 4739	ncRNA
190824	chr6	1530221	1530880	+	0	NA	Intergenic	Intergenic	-74981	NR_125804	101927703		NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript	ncRNA
187867	chr5	148320151	148320680	+	0	NA	intron (NR_105057, intron 2 of 4)	L1P1|LINE|L1	7992	NM_032566	84651		NM_032566	ENSG00000145879	SPINK7	ECG2|ECRG2	serine peptidase inhibitor Kazal type 7	protein-coding
141207	chr2	239372501	239372700	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	-20796	NR_039948	100616360		NR_039948	ENSG00000264292	MIR2467	mir-2467	microRNA 2467	ncRNA
50478	chr12	47777301	47777500	+	0	NA	intron (NM_017842, intron 1 of 2)	intron (NM_017842, intron 1 of 2)	4162	NM_017842	55652		NM_017842	ENSG00000211584	SLC48A1	HRG|HRG-1|HRG1|hHRG-1	solute carrier family 48 member 1	protein-coding
26283	chr10	14884101	14884300	+	0	NA	intron (NM_001193424, intron 2 of 5)	L1MB8|LINE|L1	5300	NM_024670	79723		NM_024670	ENSG00000152455	SUV39H2	KMT1B	SUV39H2 histone lysine methyltransferase	protein-coding
132694	chr2	108967451	108967950	+	0	NA	intron (NM_022336, intron 1 of 11)	intron (NM_022336, intron 1 of 11)	21520	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
78971	chr15	101501671	101502230	+	0	NA	Intergenic	Intergenic	-11966	NM_138324	5046		NM_002570	ENSG00000140479	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
31123	chr10	89390771	89391250	+	0	NA	Intergenic	Intergenic	-1536	NM_001270930	3434		NM_001548	ENSG00000185745	IFIT1	C56|G10P1|IFI-56|IFI-56K|IFI56|IFIT-1|IFNAI1|ISG56|P56|RNM561	interferon induced protein with tetratricopeptide repeats 1	protein-coding
229153	chr9	114493871	114494480	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	9040	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
180316	chr5	5524171	5524330	+	0	NA	Intergenic	Intergenic	101573	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
29058	chr10	67879001	67879400	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5456	NM_012238	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
169059	chr3	153248551	153249030	+	0	NA	Intergenic	L1PA10|LINE|L1	86564	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
26076	chr10	13104121	13104600	+	0	NA	intron (NM_021980, intron 1 of 13)	AluSx|SINE|Alu	4197	NM_001008212	10133		NM_021980	ENSG00000123240	OPTN	ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP	optineurin	protein-coding
218294	chr8	42389121	42389380	+	0	NA	Intergenic	MIRb|SINE|MIR	-2511	NM_001135694	7419		NM_005662	ENSG00000078668	VDAC3	HD-VDAC3|VDAC-3	voltage dependent anion channel 3	protein-coding
78302	chr15	90909321	90909580	+	0	NA	non-coding (NR_135502, exon 9 of 23)	non-coding (NR_135502, exon 9 of 23)	5260	NR_135504	4122		NM_006122	ENSG00000196547	MAN2A2	MANA2X|alpha-MIIx	mannosidase alpha class 2A member 2	protein-coding
94003	chr17	23384251	23384350	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	861189	NM_001190452	100462977		NM_001190452		MTRNR2L1	HN1	MT-RNR2 like 1 (pseudogene)	pseudo
208410	chr7	66738371	66738880	+	0	NA	intron (NM_001367727, intron 4 of 11)	AluJb|SINE|Alu	-2108	NM_001287062	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
114872	chr19	13873851	13874180	+	0	NA	promoter-TSS (NR_029613)	promoter-TSS (NR_029613)	-684	NR_029613	406957		NR_029613	ENSG00000207613	MIR181C	MIRN181C|mir-181c	microRNA 181c	ncRNA
4222	chr1	19469411	19470200	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	14490	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
170171	chr3	183637921	183638430	+	0	NA	intron (NM_001349422, intron 2 of 7)	intron (NM_001349422, intron 2 of 7)	2552	NR_146170	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
227540	chr9	91758471	91758630	+	0	NA	intron (NM_001318204, intron 2 of 7)	L1MEi|LINE|L1	-122205	NR_037489	100500902		NR_037489	ENSG00000283351	MIR3910-2	mir-3910-2	microRNA 3910-2	ncRNA
178341	chr4	145840201	145840430	+	0	NA	intron (NM_178835, intron 7 of 14)	MER91B|DNA|hAT-Tip100	98508	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
31788	chr10	98267701	98269100	+	0	NA	promoter-TSS (NM_032211)	promoter-TSS (NM_032211)	-206	NM_032211	84171		NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
47250	chr12	1198921	1199330	+	0	NA	intron (NM_178039, intron 11 of 17)	MSTA|LTR|ERVL-MaLR	171377	NM_001301248	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
30086	chr10	73908621	73909730	+	0	NA	TTS (NR_160938)	TTS (NR_160938)	-1957	NM_001145031	5328		NM_002658	ENSG00000122861	PLAU	ATF|BDPLT5|QPD|UPA|URK|u-PA	plasminogen activator, urokinase	protein-coding
193498	chr6	30561801	30562000	+	0	NA	exon (NM_025263, exon 3 of 4).3	exon (NM_025263, exon 3 of 4).3	-4306	NM_005275	2794		NM_005275	ENSG00000204590	GNL1	HSR1	G protein nucleolar 1 (putative)	protein-coding
154957	chr22	37262671	37263030	+	0	NA	Intergenic	(CCCCT)n|Simple_repeat|Simple_repeat	-18581	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
118097	chr19	34403801	34405150	+	0	NA	promoter-TSS (NM_001353433)	promoter-TSS (NM_001353433)	76	NM_032346	84306		NM_032346	ENSG00000126249	PDCD2L	-	programmed cell death 2 like	protein-coding
158017	chr22	49908671	49909280	+	0	NA	intron (NM_024105, intron 6 of 9)	intron (NM_024105, intron 6 of 9)	9463	NM_024105	79087		NM_024105	ENSG00000182858	ALG12	CDG1G|ECM39|PP14673|hALG12	ALG12 alpha-1,6-mannosyltransferase	protein-coding
97482	chr17	43785051	43785350	+	0	NA	3' UTR (NM_001136483, exon 6 of 6)	3' UTR (NM_001136483, exon 6 of 6)	4765	NM_001136483	284067		NM_001136483	ENSG00000231256	CFAP97D1	C17orf105	CFAP97 domain containing 1	protein-coding
52015	chr12	53982721	53983000	+	0	NA	Intergenic	Intergenic	-2286	NM_017409	3226		NM_017409	ENSG00000180818	HOXC10	HOX3I	homeobox C10	protein-coding
164240	chr3	57077951	57078650	+	0	NA	intron (NM_001377408, intron 1 of 14)	intron (NM_001377408, intron 1 of 14)	484	NM_001377412	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
78748	chr15	98873821	98874080	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	89524	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA
55586	chr12	106386231	106386630	+	0	NA	intron (NM_018082, intron 9 of 27)	intron (NM_018082, intron 9 of 27)	28348	NM_001160708	55703		NM_018082	ENSG00000013503	POLR3B	C128|CMT1I|HLD8|INMAP|RPC2	RNA polymerase III subunit B	protein-coding
30273	chr10	75163451	75163550	+	0	NA	intron (NM_144660, intron 2 of 4)	AluJb|SINE|Alu	-46654	NM_001324087	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
70315	chr14	101824501	101826350	+	0	NA	intron (NM_001161725, intron 3 of 15)	intron (NM_001161725, intron 3 of 15)	15562	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
42053	chr11	67463001	67463500	+	0	NA	non-coding (NR_073409, exon 7 of 7)	non-coding (NR_073409, exon 7 of 7)	6001	NR_073410	80194		NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding
154607	chr22	36298551	36299400	+	0	NA	exon (NM_002473, exon 24 of 41)	exon (NM_002473, exon 24 of 41)	-12068	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
90903	chr17	2465401	2465800	+	0	NA	intron (NM_024086, intron 5 of 9)	AluSz|SINE|Alu	46288	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
96072	chr17	39599671	39600080	+	0	NA	Intergenic	Intergenic	8045	NM_006160	4761		NM_006160	ENSG00000171532	NEUROD2	DEE72|EIEE72|NDRF|bHLHa1	neuronal differentiation 2	protein-coding
106235	chr18	11945871	11946230	+	0	NA	Intergenic	(GT)n|Simple_repeat|Simple_repeat	-35457	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
87435	chr16	70736821	70738950	+	0	NA	intron (NM_001351157, intron 12 of 17)	intron (NM_001351157, intron 12 of 17)	-17210	NR_034083	100130894		NR_034083	ENSG00000214353	VAC14-AS1	-	VAC14 antisense RNA 1	ncRNA
151087	chr21	44831401	44831880	+	0	NA	Intergenic	L1MEf|LINE|L1	-13511	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
132793	chr2	110205871	110206130	+	0	NA	promoter-TSS (NM_207181)	promoter-TSS (NM_207181)	-987	NM_000272	4867		NM_000272	ENSG00000144061	NPHP1	JBTS4|NPH1|SLSN1	nephrocystin 1	protein-coding
151314	chr21	45552651	45552750	+	0	NA	intron (NM_001352511, intron 1 of 5)	intron (NM_001352511, intron 1 of 5)	-10260	NM_001205206	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
111394	chr19	3758201	3758600	+	0	NA	intron (NM_004886, intron 3 of 10)	AluJr|SINE|Alu	3292	NM_004886	9546		NM_004886	ENSG00000011132	APBA3	MGC:15815|X11L2|mint3	amyloid beta precursor protein binding family A member 3	protein-coding
164573	chr3	64016551	64017330	+	0	NA	intron (NM_014814, intron 5 of 7)	L1MB7|LINE|L1	6532	NM_001271781	9861		NM_014814	ENSG00000163636	PSMD6	Rpn7|S10|SGA-113M|p42A|p44S10	proteasome 26S subunit, non-ATPase 6	protein-coding
147536	chr20	59403501	59404150	+	0	NA	Intergenic	CpG	103214	NM_001302456	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
193466	chr6	30517651	30519300	+	0	NA	intron (NR_149088, intron 1 of 1)	LTR12D|LTR|ERV1	2209	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
177454	chr4	113566321	113566580	+	0	NA	intron (NM_172129, intron 4 of 17)	L2a|LINE|L2	195288	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
119408	chr19	40265301	40265800	+	0	NA	promoter-TSS (NM_001330511)	promoter-TSS (NM_001330511)	-199	NM_001330511	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
84	chr1	349001	349400	+	0	NA	Intergenic	AluY|SINE|Alu	102478	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
147811	chr20	62655971	62656330	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	10471	NR_024470	100127888		NR_024470	ENSG00000232803	SLCO4A1-AS1	-	SLCO4A1 antisense RNA 1	ncRNA
2620	chr1	10185871	10186230	+	0	NA	Intergenic	L2a|LINE|L2	-24520	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
33010	chr10	110614101	110614300	+	0	NA	Intergenic	MIRb|SINE|MIR	-30136	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
100921	chr17	64467501	64467900	+	0	NA	intron (NM_001369493, intron 9 of 9)	AluSz|SINE|Alu	18585	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
187438	chr5	142095221	142097050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12644	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
216495	chr8	20234571	20234930	+	0	NA	Intergenic	Intergenic	37369	NM_001693	526		NM_001693	ENSG00000147416	ATP6V1B2	ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2	ATPase H+ transporting V1 subunit B2	protein-coding
179202	chr4	173370501	173372300	+	0	NA	exon (NM_003864, exon 1 of 4)	exon (NM_003864, exon 1 of 4)	446	NM_003864	8819		NM_003864	ENSG00000164105	SAP30	-	Sin3A associated protein 30	protein-coding
205117	chr7	6859071	6859230	+	0	NA	Intergenic	Intergenic	-32875	NM_198097	221960		NM_198097	ENSG00000146574	CCZ1B	C7orf28A|C7orf28B|CCZ1|H_NH0577018.2	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein-coding
135119	chr2	157416801	157417300	+	0	NA	intron (NM_004288, intron 7 of 7)	Tigger19a|DNA|TcMar-Tigger	27039	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
35616	chr11	1775551	1776050	+	0	NA	Intergenic	Intergenic	-11873	NM_001909	1509		NM_001909	ENSG00000117984	CTSD	CLN10|CPSD|HEL-S-130P	cathepsin D	protein-coding
25707	chr10	8990521	8990980	+	0	NA	Intergenic	Intergenic	92761	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
213326	chr7	135210671	135212530	+	0	NA	promoter-TSS (NM_014149)	promoter-TSS (NM_014149)	-74	NM_001362737	29062		NM_014149	ENSG00000105875	WDR91	HSPC049|SORF-1|SORF1	WD repeat domain 91	protein-coding
157810	chr22	46874371	46874530	+	0	NA	intron (NM_001284305, intron 4 of 12)	L1PA11|LINE|L1	41592	NR_122047	642757		NR_122047	ENSG00000280080	TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA
174146	chr4	36239101	36239300	+	0	NA	intron (NR_146894, intron 1 of 32)	AluSx|SINE|Alu	4739	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
117890	chr19	32694971	32695230	+	0	NA	intron (NM_001105570, intron 1 of 2)	HERV9N-int|LTR|ERV1	3139	NM_001105570	390916		NM_001105570	ENSG00000213965	NUDT19	RP2	nudix hydrolase 19	protein-coding
162277	chr3	47371001	47371780	+	0	NA	Intergenic	(ACCCCCC)n|Simple_repeat|Simple_repeat	-9631	NM_001304482	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
158384	chr22	50497971	50498600	+	0	NA	Intergenic	AluJr|SINE|Alu	9417	NM_033200	91289		NM_033200	ENSG00000100258	LMF2	TMEM112B|TMEM153	lipase maturation factor 2	protein-coding
9408	chr1	47450021	47450550	+	0	NA	Intergenic	Intergenic	12241	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
142360	chr20	3769751	3770050	+	0	NA	Intergenic	L2a|LINE|L2	-1512	NR_047675	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
49994	chr12	42231521	42231780	+	0	NA	3' UTR (NM_001190980, exon 3 of 3)	3' UTR (NM_001190980, exon 3 of 3)	6598	NM_005748	10138		NM_005748	ENSG00000015153	YAF2	-	YY1 associated factor 2	protein-coding
71959	chr15	23642471	23642700	+	0	NA	TTS (NM_019066)	TTS (NM_019066)	5282	NM_019066	54551		NM_019066	ENSG00000254585	MAGEL2	NDNL1|PWLS|SHFYNG|nM15	MAGE family member L2	protein-coding
75951	chr15	70447671	70448430	+	0	NA	Intergenic	Intergenic	57878	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
94669	chr17	30363551	30364850	+	0	NA	Intergenic	Intergenic	-14727	NM_001304	1362		NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
63698	chr14	21097831	21099330	+	0	NA	promoter-TSS (NM_001146683)	promoter-TSS (NM_001146683)	75	NM_016423	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
93819	chr17	20702571	20703330	+	0	NA	Intergenic	AluJb|SINE|Alu	-9496	NR_073509	100287072		NR_073509		LOC100287072	-	ribosomal protein S6 kinase B1 pseudogene	pseudo
239422	chrY	56681821	56682180	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-272255	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
165062	chr3	71453621	71454540	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	88009	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
148231	chr20	63625251	63625350	+	0	NA	intron (NM_012384, intron 1 of 9)	AluSx1|SINE|Alu	1801	NM_012384	26205		NM_012384	ENSG00000101216	GMEB2	GMEB-2|P79PIF|PIF79	glucocorticoid modulatory element binding protein 2	protein-coding
17659	chr1	157569771	157569950	+	0	NA	Intergenic	Intergenic	-17345	NM_001195388	83416		NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding
149921	chr21	36173621	36174880	+	0	NA	intron (NM_001320714, intron 2 of 36)	AluSx1|SINE|Alu	9709	NM_005128	9980		NM_005128	ENSG00000142197	DOP1B	21orf5|C21orf5|DOPEY2	DOP1 leucine zipper like protein B	protein-coding
62362	chr13	99217201	99217980	+	0	NA	intron (NR_026644, intron 1 of 8)	intron (NR_026644, intron 1 of 8)	16736	NM_177967	337867		NM_177967	ENSG00000134882	UBAC2	PHGDHL1	UBA domain containing 2	protein-coding
227273	chr9	89378251	89378930	+	0	NA	3' UTR (NM_006378, exon 18 of 18)	3' UTR (NM_006378, exon 18 of 18)	59739	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
5852	chr1	26725671	26726300	+	0	NA	intron (NM_139135, intron 1 of 19)	AluSz|SINE|Alu	29970	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
188060	chr5	150043621	150044500	+	0	NA	intron (NM_001366501, intron 14 of 18)	intron (NM_001366501, intron 14 of 18)	42494	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
231433	chr9	131250171	131250850	+	0	NA	Intergenic	AluY|SINE|Alu	26000	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
159920	chr3	16994921	16995400	+	0	NA	intron (NM_015184, intron 1 of 5)	intron (NM_015184, intron 1 of 5)	61964	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
89962	chr16	89790801	89791000	+	0	NA	intron (NM_001286167, intron 14 of 42)	AluJb|SINE|Alu	25747	NM_001286167	2175		NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	FA complementation group A	protein-coding
108434	chr18	69965801	69966200	+	0	NA	Intergenic	L1PA5|LINE|L1	-9201	NM_006566	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
219139	chr8	66118521	66119330	+	0	NA	Intergenic	Intergenic	-8204	NM_184086	84675		NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
107622	chr18	48936071	48936430	+	0	NA	intron (NM_005904, intron 3 of 3)	intron (NM_005904, intron 3 of 3)	6557	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
158230	chr22	50279051	50279750	+	0	NA	intron (NM_001376865, intron 28 of 37)	intron (NM_001376865, intron 28 of 37)	-9020	NR_110887	5600		NM_002751	ENSG00000185386	MAPK11	P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta	mitogen-activated protein kinase 11	protein-coding
182204	chr5	56833321	56833850	+	0	NA	intron (NM_005921, intron 1 of 19)	intron (NM_005921, intron 1 of 19)	18036	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
120258	chr19	42449971	42451450	+	0	NA	intron (NR_073179, intron 1 of 1)	intron (NR_073179, intron 1 of 1)	-7764	NR_133910	284340		NM_198477	ENSG00000189377	CXCL17	DMC|Dcip1|UNQ473|VCC-1|VCC1	C-X-C motif chemokine ligand 17	protein-coding
9098	chr1	45162621	45163250	+	0	NA	intron (NM_020883, intron 1 of 13)	L1PA5|LINE|L1	43670	NM_020883	57643		NM_020883	ENSG00000162415	ZSWIM5	-	zinc finger SWIM-type containing 5	protein-coding
84374	chr16	30256451	30256900	+	0	NA	Intergenic	AluJb|SINE|Alu	-8262	NM_001321892	613037		NM_001321892	ENSG00000198064	NPIPB13	-	nuclear pore complex interacting protein family, member B13	protein-coding
169353	chr3	160401551	160402180	+	0	NA	intron (NM_001288753, intron 2 of 23)	intron (NM_001288753, intron 2 of 23)	1306	NM_005496	10051		NM_005496	ENSG00000113810	SMC4	CAP-C|CAPC|SMC-4|SMC4L1	structural maintenance of chromosomes 4	protein-coding
14329	chr1	143903371	143905400	+	0	NA	TTS (NM_001372105)	TTS (NM_001372105)	265	NR_160913	338391		NR_160913		H2BP2	HIST2H2BB	H2B histone pseudogene 2	pseudo
83038	chr16	22314671	22315580	+	0	NA	exon (NM_001258034, exon 8 of 20).2	exon (NM_001258034, exon 8 of 20).2	17716	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
126427	chr2	27768921	27769180	+	0	NA	Intergenic	Intergenic	-2667	NM_145330	9553		NM_004891	ENSG00000243147	MRPL33	C2orf1|L33mt|MRP-L33|RPL33L|bL33m	mitochondrial ribosomal protein L33	protein-coding
152361	chr22	20490251	20490950	+	0	NA	intron (NR_033825, intron 1 of 5)	MER1B|DNA|hAT-Charlie	5195	NM_032775	84861		NM_032775	ENSG00000099910	KLHL22	KELCHL	kelch like family member 22	protein-coding
19836	chr1	182869051	182869700	+	0	NA	intron (NM_001357, intron 14 of 27)	intron (NM_001357, intron 14 of 27)	-29784	NR_148933	647070		NR_148933		DHX9-AS1	-	DHX9 antisense RNA 1	ncRNA
14127	chr1	120950651	120950950	+	0	NA	intron (NR_109754, intron 1 of 2)	MER51D|LTR|ERV1	8200	NR_104073	101954264		NR_104073	ENSG00000277610	RNVU1-4	RNU1-102|RNU1-50|RNVU1-5|vU1.4|vU1.5	RNA, variant U1 small nuclear 4	snRNA
181189	chr5	39137751	39138050	+	0	NA	intron (NM_199335, intron 6 of 17)	intron (NM_199335, intron 6 of 17)	-63501	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
150737	chr21	43754921	43755780	+	0	NA	intron (NM_001331030, intron 8 of 9)	intron (NM_001331030, intron 8 of 9)	13864	NM_001331030	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
145799	chr20	45415671	45417230	+	0	NA	intron (NR_047695, intron 1 of 8)	CpG	309	NR_047695	51604		NM_015937	ENSG00000124155	PIGT	CGI-06|MCAHS3|NDAP|PIG-T|PNH2	phosphatidylinositol glycan anchor biosynthesis class T	protein-coding
236165	chrX	64975101	64975740	+	0	NA	intron (NM_001178032, intron 1 of 4)	intron (NM_001178032, intron 1 of 4)	1030	NM_018684	55906		NM_018684	ENSG00000126970	ZC4H2	HCA127|KIAA1166|MCS|MRXS4|WRWF|WRWFFR|WWS	zinc finger C4H2-type containing	protein-coding
86316	chr16	61782371	61782530	+	0	NA	intron (NM_001796, intron 8 of 11)	L1PA2|LINE|L1	253988	NM_001796	1006		NM_001796	ENSG00000150394	CDH8	Nbla04261	cadherin 8	protein-coding
33641	chr10	119681021	119681480	+	0	NA	Intergenic	Intergenic	29870	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
155469	chr22	38487671	38487830	+	0	NA	intron (NM_006386, intron 12 of 12)	intron (NM_006386, intron 12 of 12)	18561	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
211718	chr7	106891051	106891350	+	0	NA	intron (NM_001282426, intron 10 of 10)	intron (NM_001282426, intron 10 of 10)	25721	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
70233	chr14	100851121	100851460	+	0	NA	non-coding (NR_046473, exon 7 of 7)	non-coding (NR_046473, exon 7 of 7)	-1100	NR_030528	768222		NR_030528	ENSG00000211574	MIR770	MIRN770|hsa-mir-770	microRNA 770	ncRNA
162026	chr3	46578971	46579130	+	0	NA	intron (NM_003212, intron 1 of 5)	intron (NM_003212, intron 1 of 5)	1262	NM_003212	6997		NM_003212	ENSG00000241186	CRIPTO	CR|CR-1|CRGF|TDGF1	cripto, EGF-CFC family member	protein-coding
224777	chr9	22035551	22035850	+	0	NA	intron (NR_047539, intron 3 of 12)	intron (NR_047539, intron 3 of 12)	-26387	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
233041	chr9	137046201	137047280	+	0	NA	promoter-TSS (NM_015392)	promoter-TSS (NM_015392)	-563	NM_015392	56654		NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
60037	chr13	32647851	32648330	+	0	NA	intron (NM_015032, intron 1 of 34)	intron (NM_015032, intron 1 of 34)	61638	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
57330	chr12	121694871	121695400	+	0	NA	Intergenic	AluY|SINE|Alu	-17617	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
67673	chr14	73133121	73133530	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	-3182	NM_000021	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
80697	chr16	3056021	3056930	+	0	NA	intron (NR_123723, intron 2 of 4)	AluJo|SINE|Alu	2895	NR_123723	100507419		NR_123723		MMP25-AS1	-	MMP25 antisense RNA 1	ncRNA
218788	chr8	59011601	59011800	+	0	NA	intron (NM_014729, intron 1 of 8)	MIR|SINE|MIR	107447	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
64455	chr14	24236851	24237750	+	0	NA	exon (NM_001351026, exon 8 of 11)	exon (NM_001351026, exon 8 of 11)	4371	NM_001351026	51292		NM_016576	ENSG00000100938	GMPR2	GMPR 2	guanosine monophosphate reductase 2	protein-coding
1133	chr1	2144701	2145180	+	0	NA	intron (NR_146911, intron 3 of 15)	intron (NR_146911, intron 3 of 15)	38935	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
204022	chr7	1918201	1918900	+	0	NA	intron (NM_001304524, intron 15 of 16)	intron (NM_001304524, intron 15 of 16)	22021	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
49068	chr12	14414151	14415350	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	29469	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
46629	chr11	128630301	128631030	+	0	NA	Intergenic	Intergenic	-43107	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
215703	chr8	1438221	1438880	+	0	NA	intron (NM_001346810, intron 3 of 14)	intron (NM_001346810, intron 3 of 14)	-135943	NR_111948	286083		NR_033895	ENSG00000275427	LOC286083	-	uncharacterized LOC286083	ncRNA
21842	chr1	207357421	207357880	+	0	NA	intron (NM_001300904, intron 10 of 10)	intron (NM_001300904, intron 10 of 10)	35972	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
166915	chr3	125011201	125011400	+	0	NA	intron (NM_020733, intron 6 of 16)	intron (NM_020733, intron 6 of 16)	44697	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
152867	chr22	22409471	22409630	+	0	NA	Intergenic	Intergenic	99192	NR_130643	140883		NM_080764	ENSG00000275004	ZNF280B	5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632	zinc finger protein 280B	protein-coding
188119	chr5	150386601	150387000	+	0	NA	intron (NM_001371623, intron 17 of 26)	intron (NM_001371623, intron 17 of 26)	25956	NM_001364083	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
109866	chr19	1234651	1235350	+	0	NA	intron (NM_152769, intron 5 of 8)	CpG	3005	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
43932	chr11	93196451	93196550	+	0	NA	intron (NM_152313, intron 1 of 10)	AluY|SINE|Alu	926	NM_001286139	120103		NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
165178	chr3	72428821	72429280	+	0	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	17573	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
9934	chr1	54485071	54486400	+	0	NA	Intergenic	Intergenic	-62493	NM_147161	26027		NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding
147317	chr20	57714851	57715280	+	0	NA	Intergenic	Intergenic	-3529	NM_199171	56937		NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding
98519	chr17	47538051	47538350	+	0	NA	intron (NM_006310, intron 1 of 22)	AluSx|SINE|Alu	7092	NM_006310	9520		NM_006310	ENSG00000141279	NPEPPS	AAP-S|MP100|PSA	aminopeptidase puromycin sensitive	protein-coding
58966	chr13	19853251	19853550	+	0	NA	intron (NM_001039649, intron 2 of 4)	intron (NM_001039649, intron 2 of 4)	10236	NM_001039650	9205		NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding
27260	chr10	29725171	29725530	+	0	NA	intron (NM_001323599, intron 1 of 38)	intron (NM_001323599, intron 1 of 38)	10451	NM_003174	6840		NM_003174	ENSG00000197321	SVIL	MFM10	supervillin	protein-coding
202218	chr6	156801971	156802130	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-22319	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
94178	chr17	28517501	28518000	+	0	NA	intron (NM_001369369, intron 1 of 8)	intron (NM_001369369, intron 1 of 8)	-6191	NM_003593	8456		NM_003593	ENSG00000109101	FOXN1	FKHL20|RONU|TIDAND|TLIND|WHN	forkhead box N1	protein-coding
64937	chr14	35805121	35806150	+	0	NA	intron (NM_014990, intron 1 of 40)	L1ME1|LINE|L1	3660	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
225901	chr9	39808701	39810180	+	0	NA	non-coding (NR_015363, exon 2 of 2)	non-coding (NR_015363, exon 2 of 2)	719	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
75248	chr15	64898371	64898530	+	0	NA	Intergenic	LTR33|LTR|ERVL	-13452	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
215954	chr8	8385451	8387250	+	0	NA	promoter-TSS (NM_001080826)	promoter-TSS (NM_001080826)	89	NM_001080826	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
142736	chr20	10349321	10349780	+	0	NA	Intergenic	Intergenic	82375	NM_018848	8195		NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	MKKS centrosomal shuttling protein	protein-coding
178525	chr4	150963301	150963500	+	0	NA	intron (NM_001367550, intron 2 of 56)	SVA_B|Retroposon|SVA	51867	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
38931	chr11	47468551	47469080	+	0	NA	3' UTR (NM_001025596, exon 14 of 14)	3' UTR (NM_001025596, exon 14 of 14)	-19679	NM_032645	5913		NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
116383	chr19	17944651	17944750	+	0	NA	TTS (NM_001136203)	TTS (NM_001136203)	-6602	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
94871	chr17	31522771	31522930	+	0	NA	intron (NM_001346748, intron 5 of 12)	intron (NM_001346748, intron 5 of 12)	-12033	NR_039877	100616248		NR_039877	ENSG00000284424	MIR4724	mir-4724	microRNA 4724	ncRNA
48642	chr12	10400371	10401450	+	0	NA	intron (NM_001199805, intron 4 of 12)	L1MB2|LINE|L1	8847	NM_013431	8302		NM_013431	ENSG00000183542	KLRC4	NKG2-F|NKG2F	killer cell lectin like receptor C4	protein-coding
91846	chr17	7210351	7210650	+	0	NA	intron (NR_135527, intron 3 of 20)	intron (NR_135527, intron 3 of 20)	-3229	NM_001369566	1742		NM_001365	ENSG00000132535	DLG4	MRD62|PSD95|SAP-90|SAP90	discs large MAGUK scaffold protein 4	protein-coding
5382	chr1	25436671	25437150	+	0	NA	intron (NM_001282564, intron 1 of 8)	intron (NM_001282564, intron 1 of 8)	6013	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
135060	chr2	156432671	156432830	+	0	NA	Intergenic	Intergenic	-2802	NM_001083112	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
60814	chr13	45346151	45346450	+	0	NA	intron (NR_024458, intron 3 of 10)	AluY|SINE|Alu	4955	NR_024458	100190939		NR_024458		TPT1-AS1	-	TPT1 antisense RNA 1	ncRNA
177040	chr4	107721281	107721900	+	0	NA	Intergenic	Intergenic	-1356	NM_005443	9061		NM_005443	ENSG00000138801	PAPSS1	ATPSK1|PAPSS|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
27295	chr10	30427151	30427250	+	0	NA	Intergenic	AluSz|SINE|Alu	-6821	NM_001244134	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
15467	chr1	150355251	150355550	+	0	NA	Intergenic	AluSp|SINE|Alu	-8711	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
104929	chr17	81923251	81924100	+	0	NA	promoter-TSS (NM_032711)	promoter-TSS (NM_032711)	-209	NM_032711	4097		NM_002359	ENSG00000197063	MAFG	hMAF	MAF bZIP transcription factor G	protein-coding
234927	chrX	37786601	37786880	+	0	NA	intron (NM_000397, intron 3 of 12)	intron (NM_000397, intron 3 of 12)	6681	NM_000397	1536		NM_000397	ENSG00000165168	CYBB	AMCBX2|CGD|CGDX|GP91-1|GP91-PHOX|GP91PHOX|IMD34|NOX2|p91-PHOX	cytochrome b-245 beta chain	protein-coding
140866	chr2	237471601	237472100	+	0	NA	Intergenic	Intergenic	-14560	NM_001281474	79083		NM_024101	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding
113374	chr19	8765321	8766180	+	0	NA	Intergenic	Intergenic	34796	NM_001004699	284383		NM_001004699	ENSG00000181733	OR2Z1	OR19-4|OR2Z2	olfactory receptor family 2 subfamily Z member 1	protein-coding
215604	chr7	159068451	159068750	+	0	NA	intron (NR_130758, intron 4 of 12)	intron (NR_130758, intron 4 of 12)	28604	NM_001308259	7434		NM_003382	ENSG00000106018	VIPR2	C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R	vasoactive intestinal peptide receptor 2	protein-coding
225651	chr9	36395921	36396500	+	0	NA	intron (NM_194330, intron 1 of 11)	intron (NM_194330, intron 1 of 11)	4059	NM_022781	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
22063	chr1	211329771	211330800	+	0	NA	intron (NM_001319207, intron 1 of 10)	intron (NM_001319207, intron 1 of 10)	3452	NM_001033910	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
116089	chr19	17263851	17264150	+	0	NA	intron (NM_001297703, intron 2 of 11)	intron (NM_001297703, intron 2 of 11)	745	NM_001297703	83878		NM_031941	ENSG00000130307	USHBP1	AIEBP|MCC2	USH1 protein network component harmonin binding protein 1	protein-coding
87612	chr16	74366671	74366850	+	0	NA	intron (NR_026950, intron 1 of 14)	intron (NR_026950, intron 1 of 14)	1495	NR_026950	283922		NR_026950	ENSG00000290890	PDPR2P	-	pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene	pseudo
93443	chr17	18644301	18644980	+	0	NA	promoter-TSS (NM_001039397)	promoter-TSS (NM_001039397)	-213	NM_001039397	254272		NM_001039397	ENSG00000189375	TBC1D28	-	TBC1 domain family member 28	protein-coding
22609	chr1	223358901	223359100	+	0	NA	intron (NM_001037175, intron 2 of 5)	intron (NM_001037175, intron 2 of 5)	5176	NM_001037175	55061		NM_017982	ENSG00000143502	SUSD4	PRO222	sushi domain containing 4	protein-coding
42786	chr11	72777071	72777880	+	0	NA	intron (NM_006645, intron 2 of 6)	intron (NM_006645, intron 2 of 6)	-6055	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA
20914	chr1	202184671	202185480	+	0	NA	intron (NR_002930, intron 15 of 21)	intron (NR_002930, intron 15 of 21)	-8915	NM_001017403	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
28207	chr10	44972121	44972380	+	0	NA	intron (NM_032023, intron 3 of 10)	intron (NM_032023, intron 3 of 10)	6559	NM_007021	11067		NM_007021	ENSG00000165507	DEPP1	C10orf10|DEPP|FIG|Fseg	DEPP autophagy regulator 1	protein-coding
178847	chr4	153788651	153789200	+	0	NA	5' UTR (NM_003013, exon 1 of 3)	5' UTR (NM_003013, exon 1 of 3)	158	NM_003013	6423		NM_003013	ENSG00000145423	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled related protein 2	protein-coding
152438	chr22	20590651	20591380	+	0	NA	Intergenic	Intergenic	82968	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
219267	chr8	67341101	67341680	+	0	NA	intron (NM_006421, intron 1 of 38)	AluJo|SINE|Alu	2391	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
225378	chr9	34993401	34993680	+	0	NA	intron (NM_001349725, intron 3 of 4)	intron (NM_001349725, intron 3 of 4)	3250	NM_001135005	25822		NM_012266	ENSG00000137094	DNAJB5	Hsc40	DnaJ heat shock protein family (Hsp40) member B5	protein-coding
182810	chr5	69090871	69091030	+	0	NA	Intergenic	AluSp|SINE|Alu	-3064	NM_022902	64924		NM_022902	ENSG00000145740	SLC30A5	ZNT5|ZNTL1|ZTL1|ZnT-5	solute carrier family 30 member 5	protein-coding
123608	chr19	54508201	54508400	+	0	NA	intron (NM_021270, intron 3 of 3).2	intron (NM_021270, intron 3 of 3).2	5469	NM_021270	3904		NM_002288	ENSG00000167618	LAIR2	CD306	leukocyte associated immunoglobulin like receptor 2	protein-coding
47770	chr12	6550951	6551130	+	0	NA	intron (NM_001039670, intron 1 of 9)	intron (NM_001039670, intron 1 of 9)	5002	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
206661	chr7	36287901	36288650	+	0	NA	intron (NM_030636, intron 6 of 7)	intron (NM_030636, intron 6 of 7)	78965	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
104194	chr17	80458271	80458430	+	0	NA	Intergenic	Intergenic	18257	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
137593	chr2	197279821	197280680	+	0	NA	intron (NR_046837, intron 5 of 5)	A-rich|Low_complexity|Low_complexity	22269	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
53701	chr12	68540271	68540430	+	0	NA	Intergenic	LTR2|LTR|ERV1	-70549	NM_001251917	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
199443	chr6	117545571	117545730	+	0	NA	intron (NM_173674, intron 14 of 14)	intron (NM_173674, intron 14 of 14)	56861	NM_001017408	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
74797	chr15	63414501	63415100	+	0	NA	intron (NR_120375, intron 4 of 6)	intron (NR_120375, intron 4 of 6)	24570	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
16220	chr1	153922121	153923950	+	0	NA	promoter-TSS (NM_020699)	promoter-TSS (NM_020699)	-63	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
24837	chr10	375951	376250	+	0	NA	intron (NM_014974, intron 17 of 36)	MIR|SINE|MIR	196106	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
29126	chr10	68470921	68472550	+	0	NA	intron (NR_102264, intron 2 of 21)	CpG	238	NM_001080449	1763		NM_001080449	ENSG00000138346	DNA2	DNA2L|hDNA2	DNA replication helicase/nuclease 2	protein-coding
30753	chr10	84204201	84204600	+	0	NA	intron (NM_033100, intron 8 of 16)	intron (NM_033100, intron 8 of 16)	9863	NM_033100	92211		NM_033100	ENSG00000148600	CDHR1	CORD15|PCDH21|PRCAD|RP65	cadherin related family member 1	protein-coding
59875	chr13	30662401	30662730	+	0	NA	Intergenic	AluYf1|SINE|Alu	28350	NM_001321534	10208		NM_005800	ENSG00000132952	USPL1	C13orf22|D13S106E|bA121O19.1	ubiquitin specific peptidase like 1	protein-coding
198675	chr6	107953571	107953950	+	0	NA	intron (NM_007214, intron 1 of 20)	SVA_D|Retroposon|SVA	4448	NM_007214	11231		NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L	SEC63 homolog, protein translocation regulator	protein-coding
191478	chr6	11197871	11198030	+	0	NA	TTS (NM_182966)	TTS (NM_182966)	34718	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
14099	chr1	120915971	120916430	+	0	NA	intron (NR_109754, intron 1 of 2)	intron (NR_109754, intron 1 of 2)	-2086	NR_160510	100996720		NR_160510		LOC100996720	-	uncharacterized LOC100996720	ncRNA
147084	chr20	53836851	53837350	+	0	NA	Intergenic	MER68|LTR|ERVL	38609	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
12385	chr1	101268671	101269030	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	31831	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
236504	chrX	71859601	71859900	+	0	NA	Intergenic	Intergenic	-51338	NM_001013627	340527		NM_001013627	ENSG00000204131	NHSL2	-	NHS like 2	protein-coding
123958	chr19	55400071	55401350	+	0	NA	3' UTR (NM_014501, exon 4 of 4)	3' UTR (NM_014501, exon 4 of 4)	1947	NR_145781	109623451		NR_145781		SNORD157	-	small nucleolar RNA, C/D box 157	snoRNA
140898	chr2	237678051	237678550	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-13864	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
216213	chr8	11916351	11916730	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-48453	NM_001384723	1508		NM_001908	ENSG00000164733	CTSB	APPS|CPSB|KWE|RECEUP	cathepsin B	protein-coding
187361	chr5	141743321	141743630	+	0	NA	Intergenic	Intergenic	-61245	NM_022481	64411		NM_022481	ENSG00000120318	ARAP3	CENTD3|DRAG1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
24014	chr1	235260751	235261450	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-66116	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
61942	chr13	78638321	78638580	+	0	NA	intron (NM_024546, intron 4 of 5)	intron (NM_024546, intron 4 of 5)	20705	NM_024546	79596		NM_024546	ENSG00000152193	OBI1	C13orf7|RNF219	ORC ubiquitin ligase 1	protein-coding
216982	chr8	23074071	23074930	+	0	NA	intron (NR_038873, intron 1 of 2)	MIR3|SINE|MIR	-5469	NM_003842	8795		NM_003842	ENSG00000120889	TNFRSF10B	CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9	TNF receptor superfamily member 10b	protein-coding
102388	chr17	75577501	75578200	+	0	NA	Intergenic	Intergenic	-10208	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
103221	chr17	77487301	77487500	+	0	NA	intron (NM_001293697, intron 2 of 9)	intron (NM_001293697, intron 2 of 9)	11765	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
174179	chr4	36310901	36311480	+	0	NA	intron (NR_165630, intron 7 of 10)	intron (NR_165630, intron 7 of 10)	29574	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
142113	chr20	2662771	2662930	+	0	NA	intron (NR_136344, intron 4 of 12)	AluSg|SINE|Alu	1366	NM_174855	3420		NM_006899	ENSG00000101365	IDH3B	RP46	isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta	protein-coding
37855	chr11	33738801	33739180	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-2511	NM_203329	966		NM_000611	ENSG00000085063	CD59	16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20	CD59 molecule (CD59 blood group)	protein-coding
448	chr1	1123771	1124600	+	0	NA	Intergenic	Intergenic	-8096	NM_001330306	54991		NM_017891	ENSG00000131591	C1orf159	-	chromosome 1 open reading frame 159	protein-coding
206805	chr7	36894371	36894530	+	0	NA	intron (NM_014800, intron 17 of 21)	intron (NM_014800, intron 17 of 21)	24982	NR_031604	100302113		NR_031604	ENSG00000221325	MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA
204944	chr7	6284121	6284380	+	0	NA	Intergenic	L1MD2|LINE|L1	-11626	NM_004227	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
154365	chr22	33553651	33553950	+	0	NA	intron (NM_133642, intron 6 of 14)	intron (NM_133642, intron 6 of 14)	18462	NM_001378631	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
157204	chr22	43147751	43148180	+	0	NA	Intergenic	HAL1|LINE|L1	-3594	NR_046308	706		NM_000714	ENSG00000100300	TSPO	BPBS|BZRP|DBI|IBP|MBR|PBR|PBS|PKBS|PTBR|TSPO1|mDRC|pk18	translocator protein	protein-coding
107400	chr18	46102551	46102850	+	0	NA	intron (NM_001001937, intron 1 of 12)	AluJr|SINE|Alu	1533	NM_001001937	498		NM_004046	ENSG00000152234	ATP5F1A	ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MC5DN4A|MC5DN4B|MOM2|OMR|ORM|hATP1	ATP synthase F1 subunit alpha	protein-coding
64306	chr14	23566071	23566300	+	0	NA	non-coding (NR_110555, exon 3 of 4)	non-coding (NR_110555, exon 3 of 4)	1606	NM_003917	8906		NM_003917	ENSG00000213983	AP1G2	G2AD	adaptor related protein complex 1 subunit gamma 2	protein-coding
222740	chr8	141401901	141403400	+	0	NA	intron (NM_032611, intron 1 of 5).2	intron (NM_032611, intron 1 of 5).2	10629	NM_032611	11156		NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase 4A3	protein-coding
134242	chr2	135043301	135043580	+	0	NA	Intergenic	Intergenic	-8852	NM_001172435	22930		NM_012233	ENSG00000115839	RAB3GAP1	MARTS2|P130|RAB3GAP|RAB3GAP130|WARBM1	RAB3 GTPase activating protein catalytic subunit 1	protein-coding
143424	chr20	29764901	29765400	+	0	NA	Intergenic	Intergenic	-115234	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
56527	chr12	116693521	116693980	+	0	NA	Intergenic	Intergenic	44319	NM_001353625	79794		NM_024738	ENSG00000111412	SPRING1	C12orf49|LUR1|POST1|SPRING	SREBF pathway regulator in golgi 1	protein-coding
180537	chr5	14595241	14596300	+	0	NA	intron (NM_019018, intron 1 of 7)	intron (NM_019018, intron 1 of 7)	13978	NM_019018	54491		NM_019018	ENSG00000145569	OTULINL	FAM105A|NET20	OTU deubiquitinase with linear linkage specificity like	protein-coding
139106	chr2	218907171	218907630	+	0	NA	intron (NR_110238, intron 3 of 4)	L1ME3A|LINE|L1	23237	NR_110238	101928537		NR_110238	ENSG00000228135	LINC01494	-	long intergenic non-protein coding RNA 1494	ncRNA
159452	chr3	13894271	13894430	+	0	NA	Intergenic	Intergenic	-14279	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
119064	chr19	39127971	39129200	+	0	NA	intron (NM_001014834, intron 1 of 7)	intron (NM_001014834, intron 1 of 7)	2799	NM_005884	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
99122	chr17	49222371	49222750	+	0	NA	TTS (NM_178500)	TTS (NM_178500)	8206	NM_001143804	162466		NM_178500	ENSG00000173868	PHOSPHO1	-	phosphoethanolamine/phosphocholine phosphatase 1	protein-coding
109898	chr19	1277971	1278730	+	0	NA	intron (NM_017914, intron 2 of 2)	intron (NM_017914, intron 2 of 2)	2820	NM_017914	55009		NM_017914	ENSG00000228300	FAM174C	C19orf24	family with sequence similarity 174 member C	protein-coding
10999	chr1	84575771	84576130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1510	NM_004388	1486		NM_004388	ENSG00000117151	CTBS	CTB	chitobiase	protein-coding
144901	chr20	36942851	36943180	+	0	NA	intron (NM_001363733, intron 2 of 15)	intron (NM_001363733, intron 2 of 15)	8693	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
138827	chr2	216371051	216371350	+	0	NA	5' UTR (NM_020814, exon 1 of 4)	5' UTR (NM_020814, exon 1 of 4)	1283	NM_020814	57574		NM_020814	ENSG00000144583	MARCHF4	MARCH-IV|MARCH4|RNF174	membrane associated ring-CH-type finger 4	protein-coding
208829	chr7	73684821	73686300	+	0	NA	intron (NR_037776, intron 2 of 11)	AluJo|SINE|Alu	1963	NM_017528	114049		NM_017528	ENSG00000071462	BUD23	HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22	BUD23 rRNA methyltransferase and ribosome maturation factor	protein-coding
83775	chr16	28738471	28738630	+	0	NA	Intergenic	SVA_B|Retroposon|SVA	-13885	NM_001287251	100507607		NM_001287250	ENSG00000196993	NPIPB9	-	nuclear pore complex interacting protein family member B9	protein-coding
234402	chrX	16723321	16723580	+	0	NA	intron (NR_033181, intron 1 of 8)	intron (NR_033181, intron 1 of 8)	3838	NR_033181	94056		NM_032796	ENSG00000169895	SYAP1	BSTA|PRO3113	synapse associated protein 1	protein-coding
91427	chr17	4722851	4723350	+	0	NA	Intergenic	Intergenic	-8328	NM_001305000	400569		NM_001001683	ENSG00000161920	MED11	HSPC296|NDDRSB	mediator complex subunit 11	protein-coding
172018	chr4	976421	977250	+	0	NA	Intergenic	Intergenic	-3266	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
89495	chr16	89145671	89145830	+	0	NA	intron (NR_147928, intron 10 of 11)	intron (NR_147928, intron 10 of 11)	9202	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
89801	chr16	89514101	89514500	+	0	NA	intron (NM_199367, intron 3 of 9)	intron (NM_199367, intron 3 of 9)	5897	NM_003119	6687		NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7 matrix AAA peptidase subunit, paraplegin	protein-coding
41186	chr11	65631871	65632980	+	0	NA	intron (NM_032223, intron 27 of 34)	intron (NM_032223, intron 27 of 34)	-3885	NR_039839	100616292		NR_039839	ENSG00000266041	MIR4690	-	microRNA 4690	ncRNA
64548	chr14	24566351	24566850	+	0	NA	Intergenic	L1M2a1|LINE|L1	9650	NM_001911	1511		NM_001911	ENSG00000100448	CTSG	CATG|CG	cathepsin G	protein-coding
83614	chr16	28203351	28203950	+	0	NA	intron (NM_015171, intron 1 of 23)	intron (NM_015171, intron 1 of 23)	8315	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
153383	chr22	24554321	24556330	+	0	NA	promoter-TSS (NM_001284257)	promoter-TSS (NM_001284257)	-187	NM_031444	83606		NM_031444	ENSG00000138867	GUCD1	C22orf13|LLN4	guanylyl cyclase domain containing 1	protein-coding
84864	chr16	31159671	31160180	+	0	NA	Intergenic	Intergenic	-9859	NM_001258290	146547		NM_173502	ENSG00000178226	PRSS36	-	serine protease 36	protein-coding
154650	chr22	36337321	36338200	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	50207	NM_002473	4627		NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding
42582	chr11	72004621	72004880	+	0	NA	exon (NM_006185, exon 24 of 27)	exon (NM_006185, exon 24 of 27)	4823	NM_001145055	10068		NM_005699	ENSG00000137496	IL18BP	FVH|IL18BPa	interleukin 18 binding protein	protein-coding
144651	chr20	36063151	36063250	+	0	NA	Intergenic	MIRc|SINE|MIR	-12240	NR_027451	647979		NR_027451	ENSG00000260032	NORAD	LINC00657	non-coding RNA activated by DNA damage	ncRNA
42318	chr11	68474051	68474150	+	0	NA	intron (NM_001352362, intron 2 of 24)	AluJr|SINE|Alu	13348	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
3207	chr1	13757121	13757680	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	7985	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
198941	chr6	110543671	110543830	+	0	NA	Intergenic	Intergenic	-67137	NM_033125	85413		NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
156374	chr22	41090651	41092100	+	0	NA	Intergenic	CpG	-1138	NR_031694	100302237		NR_031694	ENSG00000284015	MIR1281	MIRN1281|hsa-mir-1281	microRNA 1281	ncRNA
59020	chr13	20193781	20194800	+	0	NA	Intergenic	Intergenic	-1352	NM_004004	2706		NM_004004	ENSG00000165474	GJB2	BAPS|CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK	gap junction protein beta 2	protein-coding
4025	chr1	18939851	18940280	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	16611	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
207240	chr7	43764201	43764880	+	0	NA	intron (NM_001253823, intron 2 of 8)	intron (NM_001253823, intron 2 of 8)	5860	NM_000712	644		NM_000712	ENSG00000106605	BLVRA	BLVR|BVR|BVRA|BVRalpha	biliverdin reductase A	protein-coding
44892	chr11	114619451	114619750	+	0	NA	Intergenic	Intergenic	-23814	NM_001077639	54827		NM_017678	ENSG00000137634	NXPE4	C11orf33|FAM55D	neurexophilin and PC-esterase domain family member 4	protein-coding
62872	chr13	110629571	110630040	+	0	NA	intron (NR_040104, intron 4 of 8)	L1MB3|LINE|L1	14177	NM_001242881	55739		NM_018210	ENSG00000213995	NAXD	CARKD|LP3298|PEBEL2	NAD(P)HX dehydratase	protein-coding
89460	chr16	89034771	89035130	+	0	NA	Intergenic	Intergenic	-57743	NM_005187	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
154900	chr22	37169451	37169550	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	5556	NM_001346223	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
89108	chr16	88492851	88493580	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	24297	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
44923	chr11	115504021	115505580	+	0	NA	promoter-TSS (NM_001301044)	promoter-TSS (NM_001301044)	-385	NM_001301043	23705		NM_014333	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding
160413	chr3	28251831	28252830	+	0	NA	intron (NM_001331187, intron 1 of 3)	intron (NM_001331187, intron 1 of 3)	10711	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
145777	chr20	45366621	45367230	+	0	NA	exon (NM_001197129, exon 5 of 5)	exon (NM_001197129, exon 5 of 5)	3756	NR_003189	767557		NR_003189	ENSG00000254806	SYS1-DBNDD2	C20orf169-DBNDD2	SYS1-DBNDD2 readthrough (NMD candidate)	ncRNA
151251	chr21	45304101	45304400	+	0	NA	Intergenic	Intergenic	16198	NR_026943	642852		NR_026943	ENSG00000223768	LINC00205	LVBU|NCRNA00205	long intergenic non-protein coding RNA 205	ncRNA
33349	chr10	117137071	117137430	+	0	NA	intron (NM_001112704, intron 1 of 2)	CpG-3404	1020	NM_199131	11023		NM_199131	ENSG00000148704	VAX1	MCOPS11	ventral anterior homeobox 1	protein-coding
78124	chr15	90351951	90353080	+	0	NA	intron (NM_001004309, intron 1 of 3)	CpG	231	NM_001004309	342132		NM_001004309	ENSG00000196391	ZNF774	-	zinc finger protein 774	protein-coding
179185	chr4	173288321	173288730	+	0	NA	intron (NM_001375601, intron 2 of 8)	LTR25-int|LTR|ERV1	20365	NR_036093	100422849		NR_036093	ENSG00000221296	MIR548T	-	microRNA 548t	ncRNA
185321	chr5	126787671	126787830	+	0	NA	intron (NR_134488, intron 1 of 11)	AluSq2|SINE|Alu	10614	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
114428	chr19	12678351	12679000	+	0	NA	intron (NR_161467, intron 5 of 7)	AluSx1|SINE|Alu	2536	NM_001206974	1725		NM_001930	ENSG00000095059	DHPS	DHS|DS|MIG13|NEDSSWI	deoxyhypusine synthase	protein-coding
63897	chr14	21864051	21864650	+	0	NA	Intergenic	L1PA16|LINE|L1	-193333	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
224799	chr9	22244251	22244930	+	0	NA	Intergenic	Intergenic	-202234	NM_022160	63951		NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
26244	chr10	14603571	14604900	+	0	NA	intron (NM_001282695, intron 2 of 5)	CpG	166	NM_001282696	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
11478	chr1	90713801	90714230	+	0	NA	intron (NM_020063, intron 2 of 2)	intron (NM_020063, intron 2 of 2)	3287	NM_020063	343472		NM_020063	ENSG00000143032	BARHL2	-	BarH like homeobox 2	protein-coding
103433	chr17	78257851	78258080	+	0	NA	Intergenic	L2b|LINE|L2	9649	NR_164160	105371910		NR_164160		LOC105371910	-	uncharacterized LOC105371910	ncRNA
46321	chr11	125164521	125165580	+	0	NA	promoter-TSS (NR_125759)	promoter-TSS (NR_125759)	299	NM_001382329	63876		NM_022062	ENSG00000165495	PKNOX2	PREP2	PBX/knotted 1 homeobox 2	protein-coding
118046	chr19	34256351	34256450	+	0	NA	intron (NM_014686, intron 1 of 13)	AluSz|SINE|Alu	1846	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
60489	chr13	41271421	41272680	+	0	NA	intron (NM_001354073, intron 1 of 14)	MER4-int|LTR|ERV1	-8474	NM_004294	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
1563	chr1	3516101	3516500	+	0	NA	intron (NM_001409, intron 5 of 36)	intron (NM_001409, intron 5 of 36)	44490	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
163995	chr3	53157901	53158400	+	0	NA	Intergenic	Intergenic	-3059	NM_006254	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
126535	chr2	28564751	28564850	+	0	NA	intron (NM_153021, intron 18 of 57)	L1ME3D|LINE|L1	-1557	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
195534	chr6	37351751	37352400	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1908	NM_183078	9025		NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
141250	chr2	239737521	239738100	+	0	NA	Intergenic	(CCAGCC)n|Simple_repeat|Simple_repeat	-25050	NR_037808	150935		NR_037808		LOC150935	-	uncharacterized LOC150935	ncRNA
40023	chr11	62669851	62670280	+	0	NA	5' UTR (NM_001367941, exon 2 of 7)	5' UTR (NM_001367941, exon 2 of 7)	-1608	NM_001085372	790955		NM_001085372	ENSG00000204922	UQCC3	C11orf83|CCDS41658.1|MC3DN9|UNQ655	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding
29313	chr10	69337201	69337800	+	0	NA	intron (NM_000188, intron 1 of 17)	MIRc|SINE|MIR	18653	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
174222	chr4	37762671	37762900	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-63901	NM_018290	55276		NM_018290	ENSG00000169299	PGM2	MSTP006	phosphoglucomutase 2	protein-coding
32206	chr10	101778851	101779400	+	0	NA	intron (NM_001206389, intron 1 of 4)	CpG	1244	NM_001206389	2253		NM_006119	ENSG00000107831	FGF8	AIGF|FGF-8|HBGF-8|HH6|KAL6	fibroblast growth factor 8	protein-coding
176509	chr4	94451401	94452880	+	0	NA	intron (NR_046186, intron 1 of 2)	CpG	198	NR_046186	10611		NM_006457	ENSG00000163110	PDLIM5	ENH|ENH1|L9|LIM	PDZ and LIM domain 5	protein-coding
213293	chr7	134991401	134991650	+	0	NA	intron (NM_001345852, intron 3 of 9)	L2c|LINE|L2	5017	NM_001345851	340351		NM_178563	ENSG00000146856	AGBL3	CCP3	AGBL carboxypeptidase 3	protein-coding
97980	chr17	45261721	45263450	+	0	NA	promoter-TSS (NM_152343)	promoter-TSS (NM_152343)	-491	NM_152343	124783		NM_152343	ENSG00000184361	SPATA32	AEP2|C17orf46|TEX34|VAD1.2	spermatogenesis associated 32	protein-coding
157429	chr22	45168601	45169000	+	0	NA	intron (NM_007172, intron 2 of 7)	intron (NM_007172, intron 2 of 7)	4129	NM_153645	10762		NM_007172	ENSG00000093000	NUP50	NPAP60|NPAP60L	nucleoporin 50	protein-coding
28719	chr10	61896751	61898380	+	0	NA	Intergenic	Intergenic	-4134	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
92976	chr17	17119121	17119880	+	0	NA	intron (NM_015134, intron 3 of 22)	intron (NM_015134, intron 3 of 22)	77043	NM_015134	23164		NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
227718	chr9	93040851	93041550	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-17488	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
190108	chr5	177924351	177924450	+	0	NA	Intergenic	Intergenic	-15127	NR_149047	100128340		NR_149047		LOC100128340	-	uncharacterized LOC100128340	ncRNA
189456	chr5	173010151	173010480	+	0	NA	intron (NM_003945, intron 2 of 3)	intron (NM_003945, intron 2 of 3)	-10411	NR_002988	677841		NR_002988	ENSG00000212402	SNORA74B	U19-2	small nucleolar RNA, H/ACA box 74B	snoRNA
174197	chr4	36638551	36638650	+	0	NA	intron (NR_149124, intron 1 of 4)	intron (NR_149124, intron 1 of 4)	3300	NR_149124	105374400		NR_149124		LINC02505	-	long intergenic non-protein coding RNA 2505	ncRNA
231843	chr9	132694201	132694480	+	0	NA	non-coding (NR_133925, exon 6 of 6)	non-coding (NR_133925, exon 6 of 6)	23876	NM_012204	9329		NM_012204	ENSG00000125484	GTF3C4	KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA	general transcription factor IIIC subunit 4	protein-coding
133480	chr2	119924921	119925380	+	0	NA	intron (NM_002830, intron 12 of 26)	intron (NM_002830, intron 12 of 26)	-87927	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
143209	chr20	24958671	24959100	+	0	NA	intron (NM_003650, intron 2 of 3)	intron (NM_003650, intron 2 of 3)	9616	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
191795	chr6	14210551	14211830	+	0	NA	Intergenic	CpG	74264	NR_108097	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
159627	chr3	15290601	15291030	+	0	NA	intron (NM_004844, intron 3 of 8)	intron (NM_004844, intron 3 of 8)	36631	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
86788	chr16	67808201	67808400	+	0	NA	intron (NM_018430, intron 1 of 15)	AluY|SINE|Alu	1411	NM_001351158	55815		NM_018430	ENSG00000102904	TSNAXIP1	TXI1	translin associated factor X interacting protein 1	protein-coding
108844	chr18	79172271	79172430	+	0	NA	intron (NM_198531, intron 7 of 29)	AluSx|SINE|Alu	102956	NR_148360	374868		NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding
82813	chr16	21482651	21483050	+	0	NA	intron (NR_027155, intron 3 of 28)	AluSz|SINE|Alu	-18676	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
47934	chr12	6821051	6822580	+	0	NA	promoter-TSS (NM_019858)	promoter-TSS (NM_019858)	-6	NM_014449	27239		NM_014449	ENSG00000250510	GPR162	A-2|GRCA	G protein-coupled receptor 162	protein-coding
23997	chr1	235239901	235240500	+	0	NA	intron (NM_016374, intron 8 of 23)	intron (NM_016374, intron 8 of 23)	-50084	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
102626	chr17	76003471	76003630	+	0	NA	intron (NM_001258, intron 7 of 7)	intron (NM_001258, intron 7 of 7)	2644	NM_001258	1018		NM_001258	ENSG00000250506	CDK3	-	cyclin dependent kinase 3	protein-coding
202120	chr6	154782201	154782880	+	0	NA	intron (NM_001286199, intron 4 of 20)	MLT2A1|LTR|ERVL	49124	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
2341	chr1	9232601	9232800	+	0	NA	Intergenic	AluSp|SINE|Alu	-2074	NM_004285	9563		NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH|H6PDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding
149558	chr21	33204671	33206100	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-24510	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
22301	chr1	213014921	213016250	+	0	NA	promoter-TSS (NM_001300755)	promoter-TSS (NM_001300755)	-76	NM_001300755	90806		NM_144567	ENSG00000174606	ANGEL2	Ccr4d|KIAA0759L	angel homolog 2	protein-coding
153089	chr22	23411801	23412000	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-9288	NR_003950	150244		NM_152509	ENSG00000290920	ZDHHC8BP	ZDHHC8P|ZDHHC8P1	ZDHHC8B, pseudogene	pseudo
138545	chr2	207535871	207536450	+	0	NA	intron (NR_163946, intron 1 of 8)	intron (NR_163946, intron 1 of 8)	6198	NM_134442	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
123345	chr19	53865571	53866700	+	0	NA	promoter-TSS (NM_001020820)	promoter-TSS (NM_001020820)	-236	NM_001290188	91663		NM_138373	ENSG00000179820	MYADM	SB135	myeloid associated differentiation marker	protein-coding
86123	chr16	57672651	57672950	+	0	NA	intron (NM_170776, intron 1 of 11)	intron (NM_170776, intron 1 of 11)	4494	NM_001308360	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
58282	chr12	130162271	130162500	+	0	NA	promoter-TSS (NR_033834)	promoter-TSS (NR_033834)	-74	NM_007197	11211		NM_007197	ENSG00000111432	FZD10	CD350|FZ-10|Fz10|FzE7|hFz10	frizzled class receptor 10	protein-coding
136356	chr2	176082971	176083130	+	0	NA	intron (NM_001080458, intron 1 of 2)	CpG-16785	912	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
123870	chr19	55274251	55274350	+	0	NA	intron (NM_001130106, intron 5 of 8)	intron (NM_001130106, intron 5 of 8)	5556	NM_001297600	23640		NM_012267	ENSG00000133265	HSPBP1	FES1	HSPA (Hsp70) binding protein 1	protein-coding
144378	chr20	35144851	35145730	+	0	NA	intron (NM_001145025, intron 1 of 9)	intron (NM_001145025, intron 1 of 9)	2046	NM_001145025	55741		NM_018217	ENSG00000088298	EDEM2	C20orf31|C20orf49|bA4204.1	ER degradation enhancing alpha-mannosidase like protein 2	protein-coding
6659	chr1	29119151	29119680	+	0	NA	TTS (NM_001003682)	TTS (NM_001003682)	3086	NM_001171868	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
8972	chr1	44628151	44628250	+	0	NA	intron (NM_001319957, intron 4 of 13)	intron (NM_001319957, intron 4 of 13)	-3768	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
22972	chr1	226072671	226073350	+	0	NA	TTS (NM_002107)	TTS (NM_002107)	10283	NR_002315	440926		NR_002315		H3P6	H3F3AP4|p13	H3 histone pseudogene 6	pseudo
142532	chr20	5037471	5037880	+	0	NA	Intergenic	AluSp|SINE|Alu	-27362	NM_203327	9962		NM_005116	ENSG00000089057	SLC23A2	NBTL1|SLC23A1|SVCT2|YSPL2	solute carrier family 23 member 2	protein-coding
229488	chr9	122213451	122214550	+	0	NA	exon (NM_001242333, exon 7 of 9)	exon (NM_001242333, exon 7 of 9)	7740	NM_001242335	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
54757	chr12	94033101	94033500	+	0	NA	Intergenic	Intergenic	-89694	NR_135017	105369911		NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
18794	chr1	167602671	167603430	+	0	NA	Intergenic	Intergenic	-27143	NM_001322923	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
187848	chr5	147576921	147577180	+	0	NA	intron (NR_038902, intron 1 of 3)	intron (NR_038902, intron 1 of 3)	17056	NR_038902	153469		NR_038902	ENSG00000280780	JAKMIP2-AS1	-	JAKMIP2 antisense RNA 1	ncRNA
105916	chr18	3451201	3451900	+	0	NA	promoter-TSS (NM_001374397)	promoter-TSS (NM_001374397)	-43	NM_170695	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
207573	chr7	44945921	44946580	+	0	NA	Intergenic	Intergenic	32765	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
234174	chrX	11764601	11765130	+	0	NA	intron (NM_078628, intron 8 of 8)	intron (NM_078628, intron 8 of 8)	5218	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
137020	chr2	190691901	190692180	+	0	NA	3' UTR (NM_001321312, exon 8 of 8)	3' UTR (NM_001321312, exon 8 of 8)	32882	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
229615	chr9	123997801	123998330	+	0	NA	Intergenic	Intergenic	11331	NR_135129	100505588		NR_135129	ENSG00000236668	LHX2-AS1	-	LHX2 antisense RNA 1	ncRNA
100558	chr17	62650971	62651330	+	0	NA	intron (NM_006039, intron 1 of 29)	AluSc|SINE|Alu	23480	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
54277	chr12	89162771	89162930	+	0	NA	Intergenic	Intergenic	-143158	NR_038385	728084		NR_038385	ENSG00000246363	LINC02458	-	long intergenic non-protein coding RNA 2458	ncRNA
147732	chr20	62393151	62393730	+	0	NA	exon (NM_031215, exon 6 of 10)	exon (NM_031215, exon 6 of 10)	6337	NM_001024	6227		NM_001024	ENSG00000171858	RPS21	HLDF|S21|eS21	ribosomal protein S21	protein-coding
115981	chr19	17073301	17073500	+	0	NA	intron (NM_001011699, intron 1 of 10)	intron (NM_001011699, intron 1 of 10)	2052	NM_033417	93323		NM_033417	ENSG00000131351	HAUS8	DGT4|HICE1|NY-SAR-48	HAUS augmin like complex subunit 8	protein-coding
29235	chr10	69091151	69091260	+	0	NA	intron (NM_001321054, intron 1 of 1)	MIRc|SINE|MIR	3102	NM_002727	5552		NM_002727	ENSG00000122862	SRGN	PPG|PRG|PRG1	serglycin	protein-coding
66154	chr14	60333801	60334000	+	0	NA	Intergenic	L1MA4|LINE|L1	10704	NR_146481	101927729		NR_146481	ENSG00000258556	LINC02322	-	long intergenic non-protein coding RNA 2322	ncRNA
196418	chr6	43398971	43399130	+	0	NA	Intergenic	AluSx|SINE|Alu	-28491	NM_001350518	89845		NM_033450	ENSG00000124574	ABCC10	EST182763|MRP7|SIMRP7	ATP binding cassette subfamily C member 10	protein-coding
226303	chr9	68704901	68705630	+	0	NA	promoter-TSS (NM_001376041)	promoter-TSS (NM_001376041)	25	NM_001376037	8395		NM_003558	ENSG00000107242	PIP5K1B	MSS4|STM7	phosphatidylinositol-4-phosphate 5-kinase type 1 beta	protein-coding
142655	chr20	5834651	5834750	+	0	NA	intron (NM_001303478, intron 3 of 3)	MLT1A0|LTR|ERVL-MaLR	-76810	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
61440	chr13	51896301	51896680	+	0	NA	Intergenic	Intergenic	34521	NM_031290	83446		NM_031290	ENSG00000123171	CCDC70	-	coiled-coil domain containing 70	protein-coding
127394	chr2	41869771	41870200	+	0	NA	Intergenic	Intergenic	-7570	NR_033996	388942		NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
163482	chr3	50673551	50673850	+	0	NA	Intergenic	Intergenic	-1227	NM_004947	1795		NM_004947	ENSG00000088538	DOCK3	MOCA|NEDIDHA|PBP	dedicator of cytokinesis 3	protein-coding
171401	chr3	196196501	196198050	+	0	NA	TTS (NM_001039617)	TTS (NM_001039617)	14125	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
118079	chr19	34360801	34361400	+	0	NA	Intergenic	AluY|SINE|Alu	-3640	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
125684	chr2	20332051	20332350	+	0	NA	intron (NM_001352925, intron 1 of 19)	intron (NM_001352925, intron 1 of 19)	-4814	NM_001282790	23369		NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding
196685	chr6	44787451	44787830	+	0	NA	Intergenic	L1ME5|LINE|L1	-235759	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
67505	chr14	70953951	70954250	+	0	NA	intron (NM_014982, intron 2 of 35)	L1ME3D|LINE|L1	46641	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
160295	chr3	27370451	27370750	+	0	NA	Intergenic	Intergenic	-1140	NM_152534	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
24638	chr1	246753921	246754250	+	0	NA	intron (NM_016002, intron 5 of 11)	HERVIP10B3-int|LTR|ERV1	29676	NM_016002	51097		NM_016002	ENSG00000143653	SCCPDH	CGI-49|NET11	saccharopine dehydrogenase (putative)	protein-coding
46091	chr11	122845051	122846050	+	0	NA	intron (NM_019604, intron 1 of 9)	AluSx1|SINE|Alu	7050	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
142905	chr20	17972521	17972800	+	0	NA	intron (NM_001310339, intron 2 of 2)	intron (NM_001310339, intron 2 of 2)	3642	NM_001310339	92667		NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
134126	chr2	134142921	134143180	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	15925	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
202773	chr6	159060621	159061050	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-15683	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
40393	chr11	64011001	64011200	+	0	NA	intron (NM_014067, intron 4 of 10)	intron (NM_014067, intron 4 of 10)	-24831	NM_013280	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
234620	chrX	19842651	19842900	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	-9624	NM_001353895	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
121890	chr19	48365751	48366480	+	0	NA	intron (NM_012451, intron 2 of 4)	MIRb|SINE|MIR	1748	NM_012451	23546		NM_012451	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding
2026	chr1	7667501	7668400	+	0	NA	intron (NM_001349608, intron 8 of 21)	intron (NM_001349608, intron 8 of 21)	-1780	NM_001349614	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
175130	chr4	55344121	55344380	+	0	NA	Intergenic	AluSp|SINE|Alu	-1992	NM_024592	79644		NM_024592	ENSG00000128039	SRD5A3	CDG1P|CDG1Q|KRIZI|S5AR|S5AR 3|SRD5A2L|SRD5A2L1	steroid 5 alpha-reductase 3	protein-coding
41208	chr11	65658071	65658230	+	0	NA	intron (NM_001243984, intron 8 of 10)	intron (NM_001243984, intron 8 of 10)	4766	NM_021975	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
110392	chr19	1938351	1939630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2182	NM_001319	1455		NM_001319	ENSG00000133275	CSNK1G2	CK1g2	casein kinase 1 gamma 2	protein-coding
89073	chr16	88461951	88462680	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	-6603	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
222518	chr8	140556171	140556330	+	0	NA	exon (NM_001164623, exon 9 of 18)	exon (NM_001164623, exon 9 of 18)	44254	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
150312	chr21	42004651	42005400	+	0	NA	intron (NM_001320731, intron 1 of 3)	intron (NM_001320731, intron 1 of 3)	-4169	NR_119384	150142		NM_198078	ENSG00000237232	ZNF295-AS1	C21orf121|NCRNA00318|PRED87	ZNF295 antisense RNA 1	ncRNA
167022	chr3	126355671	126355830	+	0	NA	intron (NM_014079, intron 1 of 2)	intron (NM_014079, intron 1 of 2)	1658	NM_014079	28999		NM_014079	ENSG00000163884	KLF15	KKLF	KLF transcription factor 15	protein-coding
195086	chr6	35582471	35582630	+	0	NA	3' UTR (NM_001145777, exon 7 of 7)	3' UTR (NM_001145777, exon 7 of 7)	-69654	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
218972	chr8	61701051	61701350	+	0	NA	intron (NM_032466, intron 1 of 13)	intron (NM_032466, intron 1 of 13)	-11389	NM_001164752	444		NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
185545	chr5	131357651	131358580	+	0	NA	intron (NM_001375633, intron 2 of 5)	L2c|LINE|L2	94062	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
7203	chr1	32285501	32286200	+	0	NA	3' UTR (NM_001330468, exon 12 of 12)	3' UTR (NM_001330468, exon 12 of 12)	-6233	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
193775	chr6	31363771	31364700	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-7056	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
14570	chr1	145094871	145095980	+	0	NA	promoter-TSS (NM_001346068).2	promoter-TSS (NM_001346068).2	-45	NM_001385228	647135		NM_001271870	ENSG00000196369	SRGAP2B	SRGAP2L|SRGAP2P2	SLIT-ROBO Rho GTPase activating protein 2B	protein-coding
59365	chr13	24682001	24682880	+	0	NA	intron (NM_001185085, intron 2 of 22)	intron (NM_001185085, intron 2 of 22)	2029	NM_001185085	479		NM_001676	ENSG00000075673	ATP12A	ATP1AL1|H-K-ATPase|HK	ATPase H+/K+ transporting non-gastric alpha2 subunit	protein-coding
148423	chr20	63959951	63960050	+	0	NA	exon (NM_020713, exon 17 of 17)	exon (NM_020713, exon 17 of 17)	-3584	NM_001353477	54963		NM_017859	ENSG00000198276	UCKL1	UCK1L|URKL1	uridine-cytidine kinase 1 like 1	protein-coding
5033	chr1	24511701	24511900	+	0	NA	intron (NM_001251978, intron 1 of 4)	Tigger1|DNA|TcMar-Tigger	-2514	NM_001251980	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
180425	chr5	10431601	10431800	+	0	NA	intron (NM_001270660, intron 24 of 24)	(GAGT)n|Simple_repeat|Simple_repeat	10151	NR_102746	100505845		NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
219248	chr8	67064001	67066100	+	0	NA	intron (NM_001382391, intron 1 of 30)	CpG	658	NM_001364869	79848		NM_024790	ENSG00000104218	CSPP1	CSPP|CSPP-L|JBTS21	centrosome and spindle pole associated protein 1	protein-coding
89286	chr16	88695001	88695450	+	0	NA	Intergenic	Intergenic	8356	NM_001171816	115992		NM_178841	ENSG00000158717	RNF166	-	ring finger protein 166	protein-coding
17896	chr1	160096401	160096780	+	0	NA	intron (NM_052868, intron 1 of 6)	intron (NM_052868, intron 1 of 6)	2029	NM_052868	93185		NM_052868	ENSG00000162729	IGSF8	CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL	immunoglobulin superfamily member 8	protein-coding
231221	chr9	129962521	129963900	+	0	NA	intron (NM_001363755, intron 4 of 15)	intron (NM_001363755, intron 4 of 15)	79979	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
202674	chr6	158788351	158788450	+	0	NA	intron (NM_003379, intron 2 of 12)	AluSz|SINE|Alu	-23647	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
178868	chr4	154622621	154622900	+	0	NA	Intergenic	AluJo|SINE|Alu	-9952	NM_000509	2266		NM_000509	ENSG00000171557	FGG	-	fibrinogen gamma chain	protein-coding
105662	chr18	2591171	2591330	+	0	NA	intron (NM_006101, intron 10 of 16)	intron (NM_006101, intron 10 of 16)	19693	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
211273	chr7	102715421	102716150	+	0	NA	intron (NR_146066, intron 1 of 11)	MamRTE1|LINE|RTE-BovB	32909	NR_146066	100133005		NR_146066		RASA4DP	-	RAS p21 protein activator 4D, pseudogene	pseudo
128708	chr2	61670551	61671780	+	0	NA	Intergenic	Intergenic	-132809	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
95507	chr17	36482621	36484430	+	0	NA	Intergenic	Intergenic	-3102	NR_104009	9326		NM_004773	ENSG00000273611	ZNHIT3	Hit1|PEHO|TRIP3	zinc finger HIT-type containing 3	protein-coding
125783	chr2	23804271	23804430	+	0	NA	intron (NM_001354107, intron 19 of 28)	intron (NM_001354107, intron 19 of 28)	122773	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
59390	chr13	24988821	24989180	+	0	NA	Intergenic	AluY|SINE|Alu	-20531	NR_026730	646405		NM_001126062		TPTE2P1	-	TPTE2 pseudogene 1	pseudo
185827	chr5	132455671	132457100	+	0	NA	intron (NR_161242, intron 3 of 3)	Tigger15a|DNA|TcMar-Tigger	34388	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
34262	chr10	131850721	131851180	+	0	NA	Intergenic	Intergenic	-50058	NM_018461	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
99304	chr17	49803421	49803680	+	0	NA	intron (NM_001199155, intron 4 of 13)	AluY|SINE|Alu	14869	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
126902	chr2	32376851	32377150	+	0	NA	intron (NM_016252, intron 1 of 73)	intron (NM_016252, intron 1 of 73)	19784	NM_001378125	57448		NM_016252	ENSG00000115760	BIRC6	APOLLON|BRUCE	baculoviral IAP repeat containing 6	protein-coding
94361	chr17	28911521	28911900	+	0	NA	TTS (NM_020889)	TTS (NM_020889)	-8631	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
109659	chr19	1013271	1013430	+	0	NA	intron (NM_033420, intron 2 of 9)	intron (NM_033420, intron 2 of 9)	7773	NM_001033026	91304		NM_033420	ENSG00000182087	TMEM259	ASBABP1|C19orf6|MBRL|MEMBRALIN|R32184_3	transmembrane protein 259	protein-coding
220460	chr8	100414301	100414780	+	0	NA	Intergenic	Intergenic	31777	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
80191	chr16	2137801	2138000	+	0	NA	Intergenic	Intergenic	-1771	NR_037467	100500916		NR_037467	ENSG00000264397	MIR3180-5	mir-3180-5	microRNA 3180-5	ncRNA
17351	chr1	156493901	156495100	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	-3813	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
161975	chr3	46300051	46300650	+	0	NA	Intergenic	Intergenic	-53394	NM_001123041	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
155745	chr22	39172921	39173250	+	0	NA	Intergenic	Intergenic	-20405	NM_175709	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
21211	chr1	204081401	204081800	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	8485	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
25219	chr10	5808051	5808480	+	0	NA	intron (NM_001115156, intron 1 of 9)	AluJb|SINE|Alu	5169	NM_001494	2665		NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding
182429	chr5	61658571	61658950	+	0	NA	intron (NR_126524, intron 2 of 3)	intron (NR_126524, intron 2 of 3)	20979	NR_126523	285668		NR_126523	ENSG00000178722	LINC03122	C5orf64|LINC03119	long intergenic non-protein coding RNA 3122	ncRNA
178896	chr4	158089711	158090000	+	0	NA	Intergenic	L1PA2|LINE|L1	-80897	NR_147408	285505		NR_147407	ENSG00000248429	GASK1B-AS1	FAM198B-AS1	GASK1B antisense RNA 1	ncRNA
126652	chr2	28957821	28958080	+	0	NA	Intergenic	Intergenic	-23348	NM_199280	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
101041	chr17	64797371	64797530	+	0	NA	intron (NR_024386, intron 6 of 10)	intron (NR_024386, intron 6 of 10)	-15451	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
109909	chr19	1287601	1288450	+	0	NA	intron (NM_001405, intron 1 of 3)	intron (NM_001405, intron 1 of 3)	2152	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
211540	chr7	105390521	105391250	+	0	NA	Intergenic	L1MC4|LINE|L1	-1495	NM_001350740	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
165236	chr3	73016871	73017750	+	0	NA	intron (NM_001318025, intron 2 of 7)	intron (NM_001318025, intron 2 of 7)	20499	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
14621	chr1	145450951	145451050	+	0	NA	Intergenic	Intergenic	-45222	NM_001278267	100288142		NM_001278267	ENSG00000162825	NBPF20	-	NBPF member 20	protein-coding
56170	chr12	111413201	111413550	+	0	NA	intron (NM_005475, intron 1 of 7)	AluJo|SINE|Alu	7452	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
220791	chr8	102648221	102648550	+	0	NA	TTS (NM_005655)	TTS (NM_005655)	5579	NR_103759	7071		NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	KLF transcription factor 10	protein-coding
107457	chr18	46621401	46621800	+	0	NA	intron (NM_144612, intron 4 of 39)	intron (NM_144612, intron 4 of 39)	35620	NM_001384474	125336		NM_144612	ENSG00000167210	LOXHD1	DFNB77|LH2D1	lipoxygenase homology PLAT domains 1	protein-coding
237459	chrX	119753451	119754380	+	0	NA	Intergenic	Intergenic	-4673	NM_001105576	347454		NM_001105576	ENSG00000187808	SOWAHD	ANKRD58	sosondowah ankyrin repeat domain family member D	protein-coding
32723	chr10	104260321	104261000	+	0	NA	intron (NM_001191002, intron 3 of 4)	intron (NM_001191002, intron 3 of 4)	5768	NM_004832	9446		NM_004832	ENSG00000148834	GSTO1	GSTO 1-1|GSTTLp28|HEL-S-21|P28|SPG-R	glutathione S-transferase omega 1	protein-coding
183187	chr5	75677771	75678410	+	0	NA	intron (NM_001099271, intron 10 of 11)	A-rich|Low_complexity|Low_complexity	34365	NM_152408	134359		NM_152408	ENSG00000152359	POC5	C5orf37	POC5 centriolar protein	protein-coding
51999	chr12	53968221	53968880	+	0	NA	intron (NR_003716, intron 1 of 5)	intron (NR_003716, intron 1 of 5)	206	NR_003716	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
80898	chr16	3723471	3725580	+	0	NA	TTS (NM_001079846)	TTS (NM_001079846)	-7001	NM_016292	10131		NM_016292	ENSG00000126602	TRAP1	HSP 75|HSP75|HSP90L|TRAP-1	TNF receptor associated protein 1	protein-coding
55991	chr12	110288821	110289430	+	0	NA	intron (NM_170665, intron 3 of 19)	intron (NM_170665, intron 3 of 19)	7878	NM_001681	488		NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding
33147	chr10	112389021	112390050	+	0	NA	intron (NM_016234, intron 1 of 20)	intron (NM_016234, intron 1 of 20)	13337	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
167944	chr3	136195301	136196100	+	0	NA	5' UTR (NM_018133, exon 1 of 2)	5' UTR (NM_018133, exon 1 of 2)	635	NM_018133	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
110143	chr19	1612471	1613000	+	0	NA	intron (NM_001136139, intron 17 of 19)	intron (NM_001136139, intron 17 of 19)	-7273	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
216778	chr8	22502451	22502750	+	0	NA	intron (NM_005605, intron 4 of 13)	AluJo|SINE|Alu	-49327	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
3981	chr1	18902151	18903480	+	0	NA	promoter-TSS (NM_003748)	promoter-TSS (NM_003748)	-16	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
93484	chr17	18926571	18926950	+	0	NA	intron (NM_001243940, intron 9 of 9)	L1MD2|LINE|L1	-23916	NM_001282417	125206		NM_152351	ENSG00000154025	SLC5A10	SGLT-5|SGLT5	solute carrier family 5 member 10	protein-coding
118373	chr19	35716611	35719130	+	0	NA	promoter-TSS (NM_014727)	promoter-TSS (NM_014727)	-133	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
213688	chr7	140114551	140114850	+	0	NA	intron (NM_030647, intron 9 of 19)	SVA_D|Retroposon|SVA	-51749	NR_130117	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
210993	chr7	102280751	102281130	+	0	NA	intron (NM_001913, intron 20 of 22)	intron (NM_001913, intron 20 of 22)	-4201	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
71085	chr14	104866651	104866950	+	0	NA	intron (NM_015005, intron 1 of 17)	intron (NM_015005, intron 1 of 17)	1486	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
140659	chr2	233920051	233920430	+	0	NA	intron (NM_024080, intron 1 of 25)	intron (NM_024080, intron 1 of 25)	2867	NM_024080	79054		NM_024080	ENSG00000144481	TRPM8	LTRPC6|LTrpC-6|TRPP8|trp-p8	transient receptor potential cation channel subfamily M member 8	protein-coding
152848	chr22	22168071	22168680	+	0	NA	Intergenic	Intergenic	-76411	NM_001303509	7441		NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	V-set pre-B cell surrogate light chain 1	protein-coding
83255	chr16	23915051	23915350	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	79217	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
166103	chr3	110637321	110637630	+	0	NA	Intergenic	L1PA3|LINE|L1	432484	NR_045114	100506555		NR_045114		NECTIN3-AS1	PVRL3-AS1	NECTIN3 antisense RNA 1	ncRNA
32188	chr10	101611401	101612200	+	0	NA	intron (NM_022039, intron 7 of 8)	intron (NM_022039, intron 7 of 8)	-10303	NR_036115	100423033		NR_036115	ENSG00000283558	MIR3158-2	mir-3158-2	microRNA 3158-2	ncRNA
96963	chr17	42230271	42230430	+	0	NA	intron (NM_012448, intron 2 of 18)	intron (NM_012448, intron 2 of 18)	-35856	NM_032484	84514		NM_032484	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
178437	chr4	147834901	147835700	+	0	NA	intron (NM_024605, intron 3 of 22)	intron (NM_024605, intron 3 of 22)	52705	NR_039962	100616246		NR_039962	ENSG00000264274	MIR4799	-	microRNA 4799	ncRNA
34591	chr10	133256351	133256650	+	0	NA	Intergenic	Intergenic	-8615	NR_108079	101927671		NR_108078	ENSG00000166917	MIR202HG	-	MIR202 host gene	ncRNA
15294	chr1	149840721	149841300	+	0	NA	exon (NM_021059, exon 1 of 1).2	exon (NM_021059, exon 1 of 1).2	194	NM_001005464	333932		NM_001005464	ENSG00000203852	H3C15	H3/n|H3/o|H3C13|H3C14|HIST2H3A	H3 clustered histone 15	protein-coding
226009	chr9	41641351	41641530	+	0	NA	Intergenic	LTR77|LTR|ERV1	-6234	NR_103714	100289124		NM_001024608		FAM27E2	FAM27E1	family with sequence similarity 27 member E2	ncRNA
138321	chr2	203763371	203764750	+	0	NA	Intergenic	Intergenic	57421	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123521	chr19	54231551	54232400	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-8968	NR_135496	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
68597	chr14	89542721	89543180	+	0	NA	intron (NM_001085471, intron 1 of 6)	intron (NM_001085471, intron 1 of 6)	-33266	NR_024620	29018		NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
69012	chr14	91503171	91503680	+	0	NA	intron (NR_158976, intron 2 of 16)	AluJr4|SINE|Alu	6885	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
191822	chr6	14734671	14735480	+	0	NA	Intergenic	Intergenic	-449621	NR_108096	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
162299	chr3	47413151	47413630	+	0	NA	TTS (NM_012235)	TTS (NM_012235)	32369	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
31316	chr10	92696271	92696630	+	0	NA	TTS (NM_002729)	TTS (NM_002729)	6495	NM_002729	3087		NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
82449	chr16	16363251	16363550	+	0	NA	intron (NR_146336, intron 20 of 34)	intron (NR_146336, intron 20 of 34)	-5476	NR_106766	102466268		NR_106766	ENSG00000275259	MIR6511A1	MIR6511A-1|hsa-mir-6511a-1	microRNA 6511a-1	ncRNA
213415	chr7	137987921	137988180	+	0	NA	intron (NM_001253775, intron 1 of 3)	intron (NM_001253775, intron 1 of 3)	14036	NM_194071	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
199833	chr6	127744151	127744930	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L1MA10|LINE|L1	110648	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
140909	chr2	237700571	237701600	+	0	NA	intron (NM_001137551, intron 1 of 11)	intron (NM_001137551, intron 1 of 11)	8880	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
43430	chr11	77630921	77631400	+	0	NA	intron (NM_001311199, intron 1 of 6)	intron (NM_001311199, intron 1 of 6)	6634	NM_001311200	1207		NM_001293	ENSG00000074201	CLNS1A	CLCI|CLNS1B|ICln	chloride nucleotide-sensitive channel 1A	protein-coding
4077	chr1	19072501	19073030	+	0	NA	Intergenic	Intergenic	-116089	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
38045	chr11	35160121	35160880	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	-2450	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
55782	chr12	108619821	108620080	+	0	NA	Intergenic	LTR8|LTR|ERV1	12131	NM_001206609	6404		NM_003006	ENSG00000110876	SELPLG	CD162|CLA|PSGL-1|PSGL1	selectin P ligand	protein-coding
75112	chr15	64501751	64502280	+	0	NA	intron (NM_015042, intron 2 of 9)	intron (NM_015042, intron 2 of 9)	41437	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
209002	chr7	74271101	74271300	+	0	NA	Intergenic	Intergenic	-16742	NM_002914	5982		NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding
32881	chr10	110143351	110143650	+	0	NA	Intergenic	L2b|LINE|L2	8480	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
81363	chr16	4842251	4842780	+	0	NA	intron (NR_136700, intron 3 of 14)	AluJo|SINE|Alu	4773	NM_032569	84656		NM_032569	ENSG00000140632	GLYR1	BM045|HIBDL|N-PAC|NP60|NPAC|hNDF	glyoxylate reductase 1 homolog	protein-coding
1551	chr1	3481621	3481880	+	0	NA	TTS (NM_014448)	TTS (NM_014448)	27085	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
170973	chr3	194540501	194540700	+	0	NA	Intergenic	L2|LINE|L2	-43668	NR_047573	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
43231	chr11	75448321	75448580	+	0	NA	intron (NM_030792, intron 9 of 16)	MIR|SINE|MIR	3877	NM_001351167	81544		NM_030792	ENSG00000158555	GDPD5	GDE2|PP1665	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
93767	chr17	20116671	20117100	+	0	NA	intron (NM_001033553, intron 3 of 14)	MER20|DNA|hAT-Charlie	29863	NM_001033553	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
36873	chr11	10488971	10489580	+	0	NA	intron (NM_001172431, intron 5 of 13)	intron (NM_001172431, intron 5 of 13)	19051	NR_039705	100616263		NR_039705	ENSG00000283813	MIR4485	mir-4485	microRNA 4485	ncRNA
229951	chr9	126682451	126682550	+	0	NA	intron (NM_001174147, intron 2 of 7)	L2a|LINE|L2	68572	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
219904	chr8	85973401	85973650	+	0	NA	Intergenic	Intergenic	96143	NM_033126	85481		NM_033126	ENSG00000147613	PSKH2	-	protein serine kinase H2	protein-coding
27785	chr10	35449801	35450600	+	0	NA	intron (NM_001282853, intron 2 of 10)	L2a|LINE|L2	113326	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
6090	chr1	27258621	27258880	+	0	NA	intron (NM_015023, intron 1 of 15)	intron (NM_015023, intron 1 of 15)	24118	NM_015023	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
110675	chr19	2264321	2265450	+	0	NA	Intergenic	AluY|SINE|Alu	-4601	NM_001301020	4946		NM_004152	ENSG00000104904	OAZ1	AZ1|AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
51075	chr12	49944071	49944380	+	0	NA	Intergenic	L2b|LINE|L2	-6512	NM_000486	359		NM_000486	ENSG00000167580	AQP2	AQP-CD|NDI2|WCH-CD	aquaporin 2	protein-coding
184857	chr5	112158551	112159000	+	0	NA	intron (NM_001347887, intron 22 of 23)	THE1C|LTR|ERVL-MaLR	-1751	NR_015370	114915		NM_053000		EPB41L4A-AS1	C5orf26|NCRNA00219|TIGA1	EPB41L4A antisense RNA 1	ncRNA
75772	chr15	68754751	68755080	+	0	NA	Intergenic	Intergenic	47010	NR_036197	100422971		NR_036197	ENSG00000265195	MIR4312	-	microRNA 4312	ncRNA
58596	chr12	132470351	132470450	+	0	NA	Intergenic	Intergenic	-19751	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
169016	chr3	152445301	152445750	+	0	NA	exon (NM_207292, exon 5 of 9)	exon (NM_207292, exon 5 of 9)	-104535	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
180359	chr5	6774021	6774850	+	0	NA	Intergenic	CpG	-21445	NR_146281	109729133		NR_146281	ENSG00000251365	LINC02236	-	long intergenic non-protein coding RNA 2236	ncRNA
219654	chr8	80485051	80487600	+	0	NA	promoter-TSS (NM_001105539)	promoter-TSS (NM_001105539)	99	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
229601	chr9	123640051	123640350	+	0	NA	intron (NR_148208, intron 9 of 20)	L2c|LINE|L2	-154578	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
232741	chr9	136647371	136647530	+	0	NA	Intergenic	Intergenic	-11406	NR_046367	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
186121	chr5	134143571	134143730	+	0	NA	intron (NM_201632, intron 8 of 8)	intron (NM_201632, intron 8 of 8)	20032	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
20721	chr1	200873501	200874150	+	0	NA	exon (NM_005298, exon 1 of 1)	exon (NM_005298, exon 1 of 1)	844	NM_005298	2848		NM_005298	ENSG00000170128	GPR25	-	G protein-coupled receptor 25	protein-coding
163726	chr3	52309751	52309850	+	0	NA	Intergenic	AluJr|SINE|Alu	-6519	NM_015512	25981		NM_015512	ENSG00000114841	DNAH1	CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1	dynein axonemal heavy chain 1	protein-coding
4011	chr1	18930551	18930900	+	0	NA	intron (NM_001136265, intron 1 of 8)	intron (NM_001136265, intron 1 of 8)	25951	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
156823	chr22	41936451	41936550	+	0	NA	Intergenic	Intergenic	3719	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
229865	chr9	126469321	126469800	+	0	NA	intron (NM_033446, intron 7 of 9)	intron (NM_033446, intron 7 of 9)	-59056	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
21410	chr1	205295321	205295630	+	0	NA	Intergenic	AluJb|SINE|Alu	26270	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
34802	chr11	270701	270900	+	0	NA	Intergenic	L2a|LINE|L2	-7607	NM_001276700	171389		NM_138329	ENSG00000174885	NLRP6	AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5	NLR family pyrin domain containing 6	protein-coding
157967	chr22	49815571	49816900	+	0	NA	intron (NM_001304808, intron 2 of 12)	AluJo|SINE|Alu	8096	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
6400	chr1	27957851	27958150	+	0	NA	intron (NM_001304579, intron 7 of 7)	intron (NM_001304579, intron 7 of 7)	-1973	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
155174	chr22	37743651	37744030	+	0	NA	TTS (NR_160696)	TTS (NR_160696)	2104	NR_160697	102724378		NR_160696		LOC102724378	-	uncharacterized LOC102724378	ncRNA
203891	chr7	1485901	1486100	+	0	NA	intron (NM_001080453, intron 22 of 47)	AluJb|SINE|Alu	18389	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
126587	chr2	28764821	28765180	+	0	NA	intron (NM_206876, intron 2 of 8)	intron (NM_206876, intron 2 of 8)	13170	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
587	chr1	1286351	1286930	+	0	NA	intron (NM_001130413, intron 7 of 17)	CpG	6204	NM_001130413	6339		NM_002978	ENSG00000162572	SCNN1D	ENaCd|ENaCdelta|SCNED|dNaCh	sodium channel epithelial 1 subunit delta	protein-coding
38454	chr11	45374551	45375600	+	0	NA	intron (NR_122071, intron 1 of 4)	intron (NR_122071, intron 1 of 4)	3678	NR_122071	399886		NR_122071	ENSG00000255267	LINC02687	-	long intergenic non-protein coding RNA 2687	ncRNA
25357	chr10	6402871	6403030	+	0	NA	intron (NM_001323267, intron 17 of 17)	intron (NM_001323267, intron 17 of 17)	52634	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
76180	chr15	73225351	73225650	+	0	NA	intron (NM_001172623, intron 7 of 27)	L1PB1|LINE|L1	-74410	NR_162148	113219462		NR_162148		MIR12135	-	microRNA 12135	ncRNA
121642	chr19	47473221	47473480	+	0	NA	Intergenic	AluSz|SINE|Alu	-1457	NM_015063	6543		NM_015063	ENSG00000118160	SLC8A2	NCX2	solute carrier family 8 member A2	protein-coding
56710	chr12	120095621	120097280	+	0	NA	3' UTR (NM_001167606, exon 5 of 5)	3' UTR (NM_001167606, exon 5 of 5)	20303	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
98331	chr17	46266351	46268330	+	0	NA	Intergenic	CpG	-27791	NM_014834	9884		NM_014834	ENSG00000176681	LRRC37A	LRRC37|LRRC37A1	leucine rich repeat containing 37A	protein-coding
106051	chr18	9073371	9074030	+	0	NA	Intergenic	Intergenic	-28999	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
179137	chr4	169410821	169411430	+	0	NA	intron (NR_164630, intron 28 of 32)	intron (NR_164630, intron 28 of 32)	-140169	NM_020870	57630		NM_020870	ENSG00000154447	SH3RF1	POSH|RNF142|SH3MD2	SH3 domain containing ring finger 1	protein-coding
218876	chr8	60534471	60534630	+	0	NA	intron (NM_001242644, intron 1 of 6)	intron (NM_001242644, intron 1 of 6)	17563	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
216550	chr8	21897201	21897750	+	0	NA	Intergenic	Intergenic	16215	NM_003974	9046		NM_003974	ENSG00000147443	DOK2	p56DOK|p56dok-2	docking protein 2	protein-coding
219753	chr8	81082351	81082680	+	0	NA	intron (NM_018440, intron 1 of 8)	L1MDa|LINE|L1	29553	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
38232	chr11	36452101	36453650	+	0	NA	intron (NM_001160167, intron 8 of 8)	MER34B|LTR|ERV1	51878	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
201377	chr6	144857351	144857450	+	0	NA	Intergenic	Intergenic	274252	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
20883	chr1	202141471	202141630	+	0	NA	intron (NM_001256129, intron 1 of 5)	AluSx|SINE|Alu	3187	NM_138795	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
131379	chr2	96246821	96247280	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	18947	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
176798	chr4	102521971	102522530	+	0	NA	intron (NM_001382625, intron 2 of 24)	intron (NM_001382625, intron 2 of 24)	-19764	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
208938	chr7	74096271	74096430	+	0	NA	intron (NM_001204426, intron 1 of 14)	AluSc|SINE|Alu	3133	NM_001204426	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
83534	chr16	27549501	27551080	+	0	NA	promoter-TSS (NM_001286242)	promoter-TSS (NM_001286242)	146	NM_015202	23247		NM_015202	ENSG00000047578	KATNIP	JBTS26|KIAA0556	katanin interacting protein	protein-coding
3994	chr1	18916671	18916830	+	0	NA	intron (NM_001136265, intron 5 of 8)	AluJr|SINE|Alu	-13951	NM_001319218	8659		NM_003748	ENSG00000159423	ALDH4A1	ALDH4|P5CD|P5CDh	aldehyde dehydrogenase 4 family member A1	protein-coding
209228	chr7	75726051	75726350	+	0	NA	intron (NM_001243198, intron 1 of 28)	L1ME3A|LINE|L1	12741	NM_001243198	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
87736	chr16	75148221	75149880	+	0	NA	promoter-TSS (NM_001318475).2	promoter-TSS (NM_001318475).2	-1	NM_001318475	162239		NM_153688	ENSG00000184517	ZFP1	ZNF475	ZFP1 zinc finger protein	protein-coding
143036	chr20	21125401	21126580	+	0	NA	promoter-TSS (NM_001352436)	promoter-TSS (NM_001352436)	15	NM_001276389	55857		NM_018474	ENSG00000088970	KIZ	C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69	kizuna centrosomal protein	protein-coding
178992	chr4	163496871	163497030	+	0	NA	intron (NM_018352, intron 1 of 6)	AluSz|SINE|Alu	2260	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
235900	chrX	52994451	52994550	+	0	NA	intron (NM_001242492, intron 1 of 4)	intron (NM_001242492, intron 1 of 4)	972	NM_001242494	29057		NM_014138	ENSG00000268350	FAM156A	PRO0659|TMEM29	family with sequence similarity 156 member A	protein-coding
8601	chr1	41526821	41527480	+	0	NA	intron (NM_001127714, intron 4 of 7)	(CACCCT)n|Simple_repeat|Simple_repeat	-42467	NM_001956	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
29042	chr10	67762601	67762800	+	0	NA	Intergenic	LTR2|LTR|ERV1	-66505	NM_013266	29119		NM_013266	ENSG00000183230	CTNNA3	ARVD13|VR22	catenin alpha 3	protein-coding
206732	chr7	36637371	36637830	+	0	NA	intron (NM_001177506, intron 5 of 21)	MER20|DNA|hAT-Charlie	-37480	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
162434	chr3	48429151	48430500	+	0	NA	promoter-TSS (NM_002673)	promoter-TSS (NM_002673)	261	NM_001130082	5364		NM_002673	ENSG00000164050	PLXNB1	PLEXIN-B1|PLXN5|SEP	plexin B1	protein-coding
174464	chr4	39752371	39752530	+	0	NA	intron (NM_001312646, intron 3 of 4)	AluY|SINE|Alu	54314	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
41868	chr11	67213951	67214250	+	0	NA	intron (NM_012308, intron 6 of 20)	AluJo|SINE|Alu	-25914	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
60983	chr13	46688451	46688550	+	0	NA	intron (NM_015116, intron 6 of 18)	intron (NM_015116, intron 6 of 18)	108661	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
10569	chr1	67264851	67265180	+	0	NA	Intergenic	Intergenic	-42349	NR_047584	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
235650	chrX	48525451	48526550	+	0	NA	intron (NM_006579, intron 2 of 4)	AluSq2|SINE|Alu	4192	NM_006579	10682		NM_006579	ENSG00000147155	EBP	CDPX2|CHO2|CPX|CPXD|MEND	EBP cholestenol delta-isomerase	protein-coding
208074	chr7	56088271	56088430	+	0	NA	intron (NR_047689, intron 2 of 8)	intron (NR_047689, intron 2 of 8)	4602	NM_006213	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
126806	chr2	30436921	30437180	+	0	NA	Intergenic	Intergenic	-10196	NM_001304446	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
45169	chr11	117220521	117220780	+	0	NA	intron (NM_004716, intron 9 of 16)	intron (NM_004716, intron 9 of 16)	11423	NM_004716	9159		NM_004716	ENSG00000160613	PCSK7	LPC|PC7|PC8|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding
193144	chr6	29627351	29628430	+	0	NA	5' UTR (NM_021903, exon 1 of 18).7	5' UTR (NM_021903, exon 1 of 18).7	338	NM_021903	2550		NM_001470	ENSG00000204681	GABBR1	GABABR1|GABBR1-3|GB1|GPRC3A|NEDLC	gamma-aminobutyric acid type B receptor subunit 1	protein-coding
100123	chr17	58350121	58350580	+	0	NA	intron (NR_073470, intron 2 of 4)	AluSg7|SINE|Alu	1851	NM_003168	6827		NM_003168	ENSG00000213246	SUPT4H1	SPT4|SPT4H|SUPT4H|Supt4a	SPT4 homolog, DSIF elongation factor subunit	protein-coding
41161	chr11	65606921	65607800	+	0	NA	exon (NM_002419, exon 5 of 10)	exon (NM_002419, exon 5 of 10)	6861	NM_002419	4296		NM_002419	ENSG00000173327	MAP3K11	MEKK11|MLK-3|MLK3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding
29554	chr10	71376821	71377780	+	0	NA	Intergenic	CpG	-19620	NM_022124	64072		NM_022124	ENSG00000107736	CDH23	CDHR23|PITA5|USH1D	cadherin related 23	protein-coding
10738	chr1	76256351	76256800	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	181829	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
224508	chr9	19097001	19098050	+	0	NA	intron (NM_017645, intron 1 of 16)	L1P1|LINE|L1	5379	NM_017645	54801		NM_017645	ENSG00000147874	HAUS6	Dgt6|FAM29A	HAUS augmin like complex subunit 6	protein-coding
135156	chr2	157492221	157492620	+	0	NA	Intergenic	Intergenic	-48331	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
189820	chr5	177006401	177007680	+	0	NA	promoter-TSS (NM_001317961)	promoter-TSS (NM_001317961)	-246	NM_001199297	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
229739	chr9	124964021	124964480	+	0	NA	intron (NM_173690, intron 18 of 18)	Tigger2|DNA|TcMar-Tigger	-23167	NM_002077	2800		NM_002077	ENSG00000136935	GOLGA1	golgin-97	golgin A1	protein-coding
131073	chr2	88739101	88739300	+	0	NA	intron (NM_144563, intron 8 of 8)	intron (NM_144563, intron 8 of 8)	-26702	NR_015424	645784		NR_015424	ENSG00000291127	ANKRD36BP2	-	ankyrin repeat domain 36B pseudogene 2	pseudo
11036	chr1	84973701	84974380	+	0	NA	intron (NM_001330647, intron 1 of 14)	L1MA2|LINE|L1	23073	NM_001330647	255231		NM_153259	ENSG00000153898	MCOLN2	TRP-ML2|TRPML2	mucolipin TRP cation channel 2	protein-coding
111021	chr19	3058351	3058950	+	0	NA	intron (NM_198969, intron 2 of 6)	intron (NM_198969, intron 2 of 6)	3845	NM_001130	166		NM_001130	ENSG00000104964	TLE5	AES|AES-1|AES-2|ESP1|GRG|GRG5|Grg-5	TLE family member 5, transcriptional modulator	protein-coding
28377	chr10	47300101	47300850	+	0	NA	5' UTR (NM_004962, exon 1 of 3)	5' UTR (NM_004962, exon 1 of 3)	278	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
35474	chr11	1486851	1486950	+	0	NA	promoter-TSS (NM_001172223)	promoter-TSS (NM_001172223)	-121	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
201520	chr6	149094751	149095350	+	0	NA	Intergenic	Intergenic	-62389	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
155402	chr22	38348951	38349250	+	0	NA	intron (NR_002821, intron 4 of 4)	intron (NR_002821, intron 4 of 4)	-31016	NM_001894	1454		NM_001894	ENSG00000213923	CSNK1E	CKIe|CKIepsilon|HCKIE	casein kinase 1 epsilon	protein-coding
176766	chr4	102420501	102420700	+	0	NA	intron (NR_136202, intron 2 of 4)	(TGGA)n|Simple_repeat|Simple_repeat	-75118	NM_001135146	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
139048	chr2	218670201	218670680	+	0	NA	intron (NM_022453, intron 1 of 9)	AluYm1|SINE|Alu	1562	NM_022453	64320		NM_022453	ENSG00000163481	RNF25	AO7	ring finger protein 25	protein-coding
171293	chr3	195913951	195914050	+	0	NA	TTS (NR_145450)	TTS (NR_145450)	-5449	NM_001382273	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
67402	chr14	69795471	69795630	+	0	NA	intron (NM_003049, intron 1 of 4)	AluJr|SINE|Alu	1691	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
125061	chr2	9622601	9623330	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	8032	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
148055	chr20	63251251	63251750	+	0	NA	intron (NM_152864, intron 1 of 6)	LTR13|LTR|ERVK	1995	NM_001363718	128414		NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	sodium/potassium transporting ATPase interacting 4	protein-coding
108277	chr18	63301301	63301730	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	18254	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
238279	chrX	149472001	149472280	+	0	NA	Intergenic	FLAM_A|SINE|Alu	33166	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
28668	chr10	60446901	60447100	+	0	NA	intron (NM_001204403, intron 2 of 43)	intron (NM_001204403, intron 2 of 43)	-57125	NM_001320874	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
223040	chr8	143363171	143363700	+	0	NA	Intergenic	AluJo|SINE|Alu	-3458	NM_001258447	116447		NM_052963	ENSG00000184428	TOP1MT	-	DNA topoisomerase I mitochondrial	protein-coding
144915	chr20	36967601	36968580	+	0	NA	Intergenic	LTR5B|LTR|ERVK	-16382	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
44429	chr11	104609201	104609480	+	0	NA	promoter-TSS (NR_120585)	promoter-TSS (NR_120585)	-38	NR_120585	102723895		NR_120585	ENSG00000256422	LINC02552	-	long intergenic non-protein coding RNA 2552	ncRNA
99046	chr17	48895671	48895830	+	0	NA	exon (NM_001002027, exon 5 of 5)	exon (NM_001002027, exon 5 of 5)	2963	NM_005175	516		NM_005175	ENSG00000159199	ATP5MC1	ATP5A|ATP5G|ATP5G1	ATP synthase membrane subunit c locus 1	protein-coding
167208	chr3	128416651	128416750	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-46894	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
66655	chr14	63880871	63881030	+	0	NA	intron (NM_015180, intron 1 of 114)	AluSx4|SINE|Alu	27946	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
78752	chr15	98953171	98953330	+	0	NA	intron (NM_000875, intron 20 of 20)	intron (NM_000875, intron 20 of 20)	52406	NM_001102612	145814		NM_001102612	ENSG00000183571	PGPEP1L	-	pyroglutamyl-peptidase I like	protein-coding
112679	chr19	7033701	7034200	+	0	NA	TTS (NM_001136507)	TTS (NM_001136507)	3367	NM_001136507	284428		NM_001136507	ENSG00000237247	MBD3L5	-	methyl-CpG binding domain protein 3 like 5	protein-coding
74287	chr15	57708051	57708350	+	0	NA	intron (NM_001018102, intron 1 of 3)	Charlie1b|DNA|hAT-Charlie	1486	NM_015532	81488		NM_015532	ENSG00000255529	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	RNA polymerase II subunit M	protein-coding
64083	chr14	22585221	22585480	+	0	NA	intron (NM_001344, intron 1 of 2)	intron (NM_001344, intron 1 of 2)	3874	NM_001344	1603		NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
141132	chr2	239143821	239144150	+	0	NA	intron (NM_006037, intron 8 of 26)	intron (NM_006037, intron 8 of 26)	51472	NR_026664	85009		NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA
182355	chr5	59798971	59799430	+	0	NA	intron (NM_001364600, intron 3 of 7)	intron (NM_001364600, intron 3 of 7)	-30352	NM_001197218	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
187910	chr5	148842371	148842530	+	0	NA	Intergenic	Intergenic	15839	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
149123	chr21	17615821	17616080	+	0	NA	Intergenic	Charlie13a|DNA|hAT-Charlie	-3049	NM_001130914	10950		NM_006806	ENSG00000154640	BTG3	ANA|ANA/BTG3|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding
15743	chr1	151099821	151100680	+	0	NA	intron (NM_001323911, intron 5 of 8)	AluSg|SINE|Alu	29489	NM_001323912	126626		NM_144618	ENSG00000143458	GABPB2	GABPB-2	GA binding protein transcription factor subunit beta 2	protein-coding
237325	chrX	118496301	118497100	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	791	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
2080	chr1	7940651	7941450	+	0	NA	promoter-TSS (NM_001561)	promoter-TSS (NM_001561)	-211	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
79700	chr16	1299971	1300130	+	0	NA	Intergenic	Intergenic	-9102	NM_194261	7329		NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding
191926	chr6	15530021	15530480	+	0	NA	intron (NM_183040, intron 8 of 8)	intron (NM_183040, intron 8 of 8)	132778	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
64276	chr14	23326421	23327280	+	0	NA	TTS (NM_004643)	TTS (NM_004643)	4844	NM_001360552	8106		NM_004643	ENSG00000100836	PABPN1	OPMD|PAB2|PABII|PABP-2|PABP2	poly(A) binding protein nuclear 1	protein-coding
180053	chr5	1077471	1078050	+	0	NA	intron (NM_006598, intron 12 of 23).2	CpG	-14786	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
42296	chr11	68446751	68447900	+	0	NA	intron (NM_002335, intron 22 of 22)	intron (NM_002335, intron 22 of 22)	-13427	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
61241	chr13	49934351	49934750	+	0	NA	intron (NM_020456, intron 1 of 4)	AluSq|SINE|Alu	1790	NR_023351	57213		NM_020456	ENSG00000123178	SPRYD7	C13orf1|CLLD6	SPRY domain containing 7	protein-coding
65249	chr14	49898801	49900100	+	0	NA	Intergenic	Intergenic	6368	NM_001663	382		NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding
196637	chr6	44277371	44278200	+	0	NA	TTS (NM_182539)	TTS (NM_182539)	7335	NM_001137560	441151		NM_001039704	ENSG00000178233	TMEM151B	C6orf137|TMEM193|bA444E17.5	transmembrane protein 151B	protein-coding
66214	chr14	61316901	61317500	+	0	NA	Intergenic	Intergenic	-4243	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
131346	chr2	96160271	96160430	+	0	NA	Intergenic	AluSz|SINE|Alu	-14910	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
226236	chr9	66266141	66266730	+	0	NA	Intergenic	GSATII|Satellite|centr	-101529	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
82943	chr16	21855151	21856200	+	0	NA	intron (NM_001384982, intron 2 of 8)	MIRb|SINE|MIR	1982	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
218849	chr8	59972301	59972810	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	308845	NM_001321837	767		NM_004056	ENSG00000178538	CA8	CA-RP|CA-VIII|CALS|CAMRQ3|CARP	carbonic anhydrase 8	protein-coding
78272	chr15	90857871	90858280	+	0	NA	Intergenic	L2a|LINE|L2	-10513	NM_002569	5045		NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding
234745	chrX	22192701	22192930	+	0	NA	TTS (NR_073010)	TTS (NR_073010)	-19832	NR_046639	100873942		NR_046639	ENSG00000224204	PHEX-AS1	-	PHEX antisense RNA 1	ncRNA
179269	chr4	176197701	176197900	+	0	NA	Intergenic	MIR|SINE|MIR	-2215	NM_144644	132851		NM_144644	ENSG00000150628	SPATA4	CFAP178|FAP178|SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
194893	chr6	34681871	34682500	+	0	NA	intron (NM_022758, intron 1 of 3)	AluSz6|SINE|Alu	-13969	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
4143	chr1	19340901	19342380	+	0	NA	intron (NM_001206541, intron 8 of 8)	intron (NM_001206541, intron 8 of 8)	29314	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
176330	chr4	88055051	88055150	+	0	NA	intron (NR_156488, intron 7 of 13)	intron (NR_156488, intron 7 of 13)	47465	NM_000297	5311		NM_000297	ENSG00000118762	PKD2	APKD2|PC2|PKD4|Pc-2|TRPP2	polycystin 2, transient receptor potential cation channel	protein-coding
223454	chr8	143988671	143989150	+	0	NA	Intergenic	Intergenic	-1146	NM_001009184	2907		NM_000837	ENSG00000178719	GRINA	HNRGW|LFG1|NMDARA1|TMBIM3	glutamate ionotropic receptor NMDA type subunit associated protein 1	protein-coding
184678	chr5	108378501	108379130	+	0	NA	intron (NM_001163315, intron 1 of 8)	L2b|LINE|L2	3283	NM_001163315	64839		NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
213401	chr7	136419671	136419830	+	0	NA	Intergenic	L1PA2|LINE|L1	-442391	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
64756	chr14	34561251	34562480	+	0	NA	non-coding (NR_159358, exon 12 of 12)	non-coding (NR_159358, exon 12 of 12)	-5476	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
188156	chr5	150431271	150431630	+	0	NA	Intergenic	AluJb|SINE|Alu	18289	NM_005617	6208		NM_005616	ENSG00000164587	RPS14	EMTB|S14|uS11	ribosomal protein S14	protein-coding
96469	chr17	40245301	40245500	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSx1|SINE|Alu	26096	NM_133264	147179		NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding
45678	chr11	119041401	119041600	+	0	NA	Intergenic	AluSg|SINE|Alu	-10594	NM_001164277	2542		NM_001467	ENSG00000137700	SLC37A4	CDG2W|G6PT|G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|SPX4|TRG-19|TRG19	solute carrier family 37 member 4	protein-coding
69343	chr14	93956901	93958330	+	0	NA	promoter-TSS (NM_016150)	promoter-TSS (NM_016150)	-568	NM_016150	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
217220	chr8	26451621	26451950	+	0	NA	Intergenic	Intergenic	61372	NM_001330491	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
100770	chr17	63989951	63991580	+	0	NA	Intergenic	Intergenic	-7586	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
77163	chr15	80032651	80032980	+	0	NA	Intergenic	Intergenic	-26753	NM_001242918	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
94386	chr17	28948871	28950000	+	0	NA	intron (NM_020889, intron 2 of 8)	CpG	2083	NM_020889	57649		NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding
31298	chr10	92594151	92594550	+	0	NA	intron (NM_004523, intron 1 of 21)	intron (NM_004523, intron 1 of 21)	1220	NM_004523	3832		NM_004523	ENSG00000138160	KIF11	EG5|HKSP|KNSL1|MCLMR|TRIP5	kinesin family member 11	protein-coding
28179	chr10	43913751	43914050	+	0	NA	non-coding (NR_136148, exon 2 of 2)	non-coding (NR_136148, exon 2 of 2)	1498	NR_136148	283033		NR_033846		LINC00841	-	long intergenic non-protein coding RNA 841	ncRNA
143584	chr20	31678251	31678500	+	0	NA	intron (NR_134257, intron 1 of 2)	MIR3|SINE|MIR	40463	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
221118	chr8	118104871	118105480	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	6651	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
24518	chr1	244801201	244801950	+	0	NA	Intergenic	Intergenic	-33731	NM_001312871	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
173273	chr4	7053001	7053950	+	0	NA	intron (NM_152293, intron 1 of 1)	intron (NM_152293, intron 1 of 1)	-7244	NR_033828	100129931		NR_033828	ENSG00000245748	LOC100129931	-	uncharacterized LOC100129931	ncRNA
51493	chr12	52099001	52099200	+	0	NA	intron (NR_120440, intron 1 of 1)	SATR2|Satellite|Satellite	5531	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
104448	chr17	81094401	81095950	+	0	NA	intron (NM_001385147, intron 5 of 12)	intron (NM_001385147, intron 5 of 12)	-2436	NM_001385159	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
30303	chr10	75238301	75238900	+	0	NA	Intergenic	Intergenic	-2643	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
32866	chr10	110078671	110078900	+	0	NA	intron (NM_016824, intron 1 of 14)	intron (NM_016824, intron 1 of 14)	-70404	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
214177	chr7	144842321	144842600	+	0	NA	Intergenic	MER92C|LTR|ERV1	-6407	NM_001350895	27010		NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
45367	chr11	118275001	118275550	+	0	NA	Intergenic	L2c|LINE|L2	-10739	NM_144765	10205		NM_005797	ENSG00000149573	MPZL2	DFNB111|EVA|EVA1	myelin protein zero like 2	protein-coding
159771	chr3	16304071	16304230	+	0	NA	3' UTR (NM_001330670, exon 9 of 9)	3' UTR (NM_001330670, exon 9 of 9)	38938	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
52831	chr12	57061951	57062050	+	0	NA	intron (NM_015257, intron 6 of 7)	AluSc|SINE|Alu	-10802	NM_001256041	4640		NM_005379	ENSG00000166866	MYO1A	BBMI|DFNA48|MIHC|MYHL	myosin IA	protein-coding
53351	chr12	64648721	64649380	+	0	NA	intron (NR_040718, intron 1 of 3)	AluJr4|SINE|Alu	-26445	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
36001	chr11	2891851	2894100	+	0	NA	intron (NR_169305, intron 2 of 2)	intron (NR_169305, intron 2 of 2)	-6716	NM_183233	5002		NM_002555	ENSG00000110628	SLC22A18	BWR1A|BWSCR1A|HET|IMPT1|ITM|ORCTL2|SLC22A1L|TSSC5|p45-BWR1A	solute carrier family 22 member 18	protein-coding
35732	chr11	2021671	2021830	+	0	NA	Intergenic	Intergenic	-20284	NR_131224	283120		NR_002196	ENSG00000130600	H19	ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2	H19 imprinted maternally expressed transcript	ncRNA
133093	chr2	112583321	112583580	+	0	NA	promoter-TSS (NR_163920)	promoter-TSS (NR_163920)	-997	NR_163920	84269		NM_032309	ENSG00000125611	CHCHD5	C2orf9|CHTM1|MIC14|MIX14	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding
176284	chr4	87103371	87104130	+	0	NA	intron (NM_001313959, intron 7 of 19)	intron (NM_001313959, intron 7 of 19)	96749	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
61958	chr13	79392771	79393300	+	0	NA	intron (NM_022118, intron 1 of 20)	L1MEf|LINE|L1	13186	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
26793	chr10	23340821	23341480	+	0	NA	intron (NM_001371909, intron 1 of 15)	L2a|LINE|L2	-2807	NR_155752	105376453		NR_155752	ENSG00000224215	C10orf67-AS1	-	C10orf67 antisense RNA 1	ncRNA
228188	chr9	97635351	97635950	+	0	NA	intron (NM_001351507, intron 1 of 21)	AluSx|SINE|Alu	1829	NM_002486	4686		NM_002486	ENSG00000136937	NCBP1	CBP80|NCBP|Sto1	nuclear cap binding protein subunit 1	protein-coding
182967	chr5	71453371	71454480	+	0	NA	Intergenic	Intergenic	-1726	NM_018429	55814		NM_018429	ENSG00000145734	BDP1	DFNB112|HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding
236853	chrX	79361221	79361880	+	0	NA	intron (NM_004867, intron 4 of 5)	L1PA13|LINE|L1	5784	NM_004867	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
73699	chr15	45111421	45111850	+	0	NA	intron (NM_001363711, intron 5 of 33)	CpG-8180	2526	NM_014080	50506		NM_014080	ENSG00000140279	DUOX2	LNOX2|NOXEF2|P138-TOX|TDH6|THOX2	dual oxidase 2	protein-coding
149770	chr21	34809501	34810330	+	0	NA	intron (NM_001754, intron 7 of 8)	intron (NM_001754, intron 7 of 8)	64090	NR_038886	100506385		NR_038885	ENSG00000234380	LINC01426	lincRNA-uc002yug.2	long intergenic non-protein coding RNA 1426	ncRNA
165009	chr3	71384571	71385180	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-80104	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
20130	chr1	192547671	192547830	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-28023	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
146573	chr20	50082901	50083300	+	0	NA	intron (NM_001257396, intron 2 of 2)	intron (NM_001257396, intron 2 of 2)	30050	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
552	chr1	1244971	1245130	+	0	NA	intron (NM_001014980, intron 1 of 7)	intron (NM_001014980, intron 1 of 7)	1672	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
47047	chr12	540471	540630	+	0	NA	intron (NM_173593, intron 3 of 19)	L2c|LINE|L2	45936	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
225103	chr9	33444601	33444800	+	0	NA	intron (NM_004925, intron 1 of 5)	intron (NM_004925, intron 1 of 5)	2893	NM_004925	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
197195	chr6	63586401	63586800	+	0	NA	Intergenic	L1PA10|LINE|L1	14120	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
24382	chr1	241717201	241717600	+	0	NA	intron (NM_001367482, intron 9 of 27)	MIR3|SINE|MIR	65119	NM_001367482	128025		NM_144625	ENSG00000162843	WDR64	-	WD repeat domain 64	protein-coding
2919	chr1	11717821	11718150	+	0	NA	intron (NM_198545, intron 6 of 6)	AluJo|SINE|Alu	-18100	NM_001040194	57085		NM_020350	ENSG00000177674	AGTRAP	ATRAP	angiotensin II receptor associated protein	protein-coding
9767	chr1	53409721	53410800	+	0	NA	Intergenic	Intergenic	29760	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
52138	chr12	54213851	54214030	+	0	NA	Intergenic	Intergenic	17536	NR_039851	100616400		NR_039851	ENSG00000283803	MIR3198-2	mir-3198-2	microRNA 3198-2	ncRNA
76833	chr15	77419401	77421480	+	0	NA	promoter-TSS (NM_001304504)	promoter-TSS (NM_001304504)	-211	NM_018200	10363		NM_018200	ENSG00000140382	HMG20A	HMGX1|HMGXB1	high mobility group 20A	protein-coding
108026	chr18	58887501	58887800	+	0	NA	intron (NM_001375912, intron 2 of 9)	intron (NM_001375912, intron 2 of 9)	22773	NM_001353538	55205		NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding
155620	chr22	38866101	38866730	+	0	NA	exon (NM_001303494, exon 5 of 5)	exon (NM_001303494, exon 5 of 5)	5801	NM_001303494	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
21858	chr1	207495801	207496600	+	0	NA	promoter-TSS (NM_000573)	promoter-TSS (NM_000573)	43	NM_000651	1378		NM_000573	ENSG00000203710	CR1	C3BR|C4BR|CD35|KN	complement C3b/C4b receptor 1 (Knops blood group)	protein-coding
203397	chr6	170717001	170717230	+	0	NA	Intergenic	L1ME1|LINE|L1	-132423	NM_001199461	5134		NM_002598	ENSG00000071994	PDCD2	RP8|ZMYND7	programmed cell death 2	protein-coding
133399	chr2	118774551	118774650	+	0	NA	Intergenic	CpG	73048	NM_001426	2019		NM_001426	ENSG00000163064	EN1	ENDOVESLB	engrailed homeobox 1	protein-coding
128599	chr2	60971451	60971800	+	0	NA	intron (NM_001322127, intron 4 of 16)	intron (NM_001322127, intron 4 of 16)	45587	NM_001322124	150962		NM_144709	ENSG00000162927	PUS10	CCDC139|DOBI|Hup10	pseudouridine synthase 10	protein-coding
42485	chr11	69947051	69947150	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-38807	NM_001378092	55107		NM_018043	ENSG00000131620	ANO1	DOG1|INDMS|MYMY7|ORAOV2|TAOS2|TMEM16A	anoctamin 1	protein-coding
88017	chr16	81009971	81010200	+	0	NA	intron (NM_001270473, intron 1 of 9)	AluSz|SINE|Alu	-3200	NR_147842	56942		NM_020188	ENSG00000103121	CMC2	2310061C15Rik|C16orf61|DC13	C-X9-C motif containing 2	protein-coding
78625	chr15	94237621	94237900	+	0	NA	intron (NR_169532, intron 1 of 23)	MER4E1|LTR|ERV1	6199	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
66722	chr14	64450201	64450530	+	0	NA	intron (NM_001304508, intron 2 of 2)	intron (NM_001304508, intron 2 of 2)	-15134	NM_004857	9495		NM_004857	ENSG00000179841	AKAP5	AKAP75|AKAP79|H21	A-kinase anchoring protein 5	protein-coding
89592	chr16	89279721	89280480	+	0	NA	exon (NM_001256183, exon 9 of 13)	exon (NM_001256183, exon 9 of 13)	-16028	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
156241	chr22	40395601	40395800	+	0	NA	intron (NM_001350047, intron 1 of 20)	L2|LINE|L2	25106	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
161318	chr3	39411571	39412150	+	0	NA	TTS (NR_002324)	TTS (NR_002324)	806	NR_002324	6044		NR_002324	ENSG00000202363	SNORA62	E2|E2-1|RNE2|RNU108	small nucleolar RNA, H/ACA box 62	snoRNA
122463	chr19	49526451	49526950	+	0	NA	TTS (NM_004107)	TTS (NM_004107)	-1303	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
141964	chr20	1320351	1320650	+	0	NA	intron (NR_037661, intron 2 of 9)	intron (NR_037661, intron 2 of 9)	-4843	NR_040047	100507495		NR_040047	ENSG00000234684	SDCBP2-AS1	-	SDCBP2 antisense RNA 1	ncRNA
173540	chr4	10077401	10078280	+	0	NA	TTS (NR_036090)	TTS (NR_036090)	852	NR_036090	100423011		NR_036090	ENSG00000264931	MIR3138	mir-3138	microRNA 3138	ncRNA
183135	chr5	74925221	74925580	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-58434	NM_015566	26049		NM_015566	ENSG00000198780	FAM169A	SLAP|SLAP75	family with sequence similarity 169 member A	protein-coding
49564	chr12	26884701	26885350	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-51831	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
212140	chr7	116527471	116527630	+	0	NA	intron (NM_001753, intron 2 of 2)	intron (NM_001753, intron 2 of 2)	1188	NM_001172897	857		NM_001753	ENSG00000105974	CAV1	BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21	caveolin 1	protein-coding
201871	chr6	150637551	150637650	+	0	NA	intron (NR_138140, intron 1 of 2)	HAL1ME|LINE|L1	4636	NR_138140	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
53896	chr12	70733171	70733630	+	0	NA	intron (NM_130846, intron 2 of 9)	intron (NM_130846, intron 2 of 9)	21208	NR_073474	5801		NM_002849	ENSG00000153233	PTPRR	EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ	protein tyrosine phosphatase receptor type R	protein-coding
112646	chr19	6813751	6814530	+	0	NA	intron (NM_005428, intron 1 of 26)	intron (NM_005428, intron 1 of 26)	41432	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
44501	chr11	106025751	106025850	+	0	NA	Intergenic	L1MA9|LINE|L1	-3513	NM_001318749	84437		NM_032424	ENSG00000170903	MSANTD4	KIAA1826	Myb/SANT DNA binding domain containing 4 with coiled-coils	protein-coding
25159	chr10	5283551	5283930	+	0	NA	Intergenic	Intergenic	-12504	NR_149060	110806285		NR_149060	ENSG00000224034	LINC02561	-	long intergenic non-protein coding RNA 2561	ncRNA
21151	chr1	203685121	203685380	+	0	NA	intron (NM_001365783, intron 2 of 20)	intron (NM_001365783, intron 2 of 20)	-44331	NR_003019	677843		NR_003019	ENSG00000221643	SNORA77	ACA63|SNORA77A	small nucleolar RNA, H/ACA box 77	snoRNA
146240	chr20	48825201	48826330	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	2234	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
165303	chr3	84958701	84959730	+	0	NA	5' UTR (NM_001375961, exon 1 of 11)	5' UTR (NM_001375961, exon 1 of 11)	226	NM_001375961	253559		NM_153184	ENSG00000175161	CADM2	IGSF4D|NECL3|Necl-3|SynCAM 2|SynCAM-2|synCAM2	cell adhesion molecule 2	protein-coding
118824	chr19	38561901	38562400	+	0	NA	intron (NM_000540, intron 90 of 105)	intron (NM_000540, intron 90 of 105)	-34197	NR_134907	105372397		NR_134907	ENSG00000267291	MAP4K1-AS1	-	MAP4K1 antisense RNA 1	ncRNA
189571	chr5	175480161	175481650	+	0	NA	intron (NM_001322981, intron 1 of 9)	intron (NM_001322981, intron 1 of 9)	2345	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
238246	chrX	144115351	144115450	+	0	NA	Intergenic	Intergenic	231329	NR_121210	389898		NM_001012989	ENSG00000276380	UBE2NL	Li174	ubiquitin conjugating enzyme E2 N like (gene/pseudogene)	protein-coding
2637	chr1	10309521	10309780	+	0	NA	intron (NM_001365952, intron 22 of 48)	L2b|LINE|L2	10684	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
168388	chr3	141998701	141998900	+	0	NA	intron (NM_006286, intron 2 of 10)	intron (NM_006286, intron 2 of 10)	1571	NM_001178140	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
145621	chr20	44671201	44672450	+	0	NA	promoter-TSS (NR_034104)	promoter-TSS (NR_034104)	-86	NR_034104	79015		NM_024049	ENSG00000283440	LINC01260	-	long intergenic non-protein coding RNA 1260	ncRNA
105812	chr18	2957101	2957380	+	0	NA	intron (NM_001375809, intron 2 of 19)	intron (NM_001375809, intron 2 of 19)	-10617	NR_026659	727896		NR_026659		CHORDC1P4	-	CHORDC1 pseudogene 4	pseudo
115458	chr19	15348201	15348400	+	0	NA	Intergenic	AluSc|SINE|Alu	-15761	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
68749	chr14	91045001	91045300	+	0	NA	intron (NM_001322228, intron 1 of 15)	MLT1E2|LTR|ERVL-MaLR	14974	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
3038	chr1	12146051	12146630	+	0	NA	Intergenic	Intergenic	-20603	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
48658	chr12	10435601	10436030	+	0	NA	exon (NM_002260, exon 1 of 6)	exon (NM_002260, exon 1 of 6)	178	NM_002260	3822		NM_002260	ENSG00000205809	KLRC2	CD159c|NKG2-C|NKG2C	killer cell lectin like receptor C2	protein-coding
184351	chr5	96973771	96974350	+	0	NA	intron (NM_175920, intron 1 of 17)	intron (NM_175920, intron 1 of 17)	15627	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
75434	chr15	65795621	65796580	+	0	NA	Intergenic	Intergenic	-3807	NM_005848	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
84204	chr16	29867551	29868050	+	0	NA	intron (NR_015396, intron 5 of 5)	intron (NR_015396, intron 5 of 5)	3966	NR_015396	440356		NR_015396	ENSG00000293487	CDIPTOSP	CDIPT-AS1|lnc-CTHCC	CDIP transferase opposite strand, pseudogene	ncRNA
152910	chr22	22759221	22760330	+	0	NA	Intergenic	L1MC|LINE|L1	-63001	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
157355	chr22	44685401	44686300	+	0	NA	intron (NM_001198721, intron 2 of 9)	intron (NM_001198721, intron 2 of 9)	8765	NM_001198721	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
112990	chr19	7880701	7880900	+	0	NA	promoter-TSS (NR_033250)	promoter-TSS (NR_033250)	-568	NR_033250	388499		NR_033250		LYPLA2P2	-	LYPLA2 pseudogene 2	pseudo
89261	chr16	88659201	88659930	+	0	NA	intron (NM_002461, intron 1 of 9)	intron (NM_002461, intron 1 of 9)	3526	NM_002461	4597		NM_002461	ENSG00000167508	MVD	FP17780|MDDase|MPD|POROK7	mevalonate diphosphate decarboxylase	protein-coding
18243	chr1	161051121	161051380	+	0	NA	intron (NM_001025598, intron 10 of 11)	intron (NM_001025598, intron 10 of 11)	-5273	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
10820	chr1	77927271	77927430	+	0	NA	intron (NM_144573, intron 8 of 12)	intron (NM_144573, intron 8 of 12)	-37811	NR_103535	374987		NM_199343	ENSG00000235927	NEXN-AS1	C1orf118	NEXN antisense RNA 1	ncRNA
178618	chr4	152101821	152102080	+	0	NA	intron (NR_121627, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	1132	NR_121627	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
83115	chr16	22503171	22503530	+	0	NA	Intergenic	Intergenic	-1099	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
171415	chr3	196215201	196216250	+	0	NA	promoter-TSS (NM_152672)	promoter-TSS (NM_152672)	-809	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
232412	chr9	136077621	136077880	+	0	NA	intron (NM_144653, intron 1 of 5)	intron (NM_144653, intron 1 of 5)	17539	NM_144653	138151		NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding
6344	chr1	27727351	27727450	+	0	NA	intron (NM_001143913, intron 1 of 8)	MIRb|SINE|MIR	1439	NM_001143915	199870		NM_152660	ENSG00000009780	FAM76A	-	family with sequence similarity 76 member A	protein-coding
175252	chr4	63250451	63250550	+	0	NA	Intergenic	L1PA4|LINE|L1	-1088735	NR_110595	101927186		NR_110595		ADGRL3-AS1	LPHN3-AS1	ADGRL3 antisense RNA 1	ncRNA
142911	chr20	18019151	18019400	+	0	NA	Intergenic	LTR16C|LTR|ERVL	38641	NM_021220	58495		NM_021220	ENSG00000125850	OVOL2	CHED|CHED1|CHED2|EUROIMAGE566589|PPCD1|ZNF339	ovo like zinc finger 2	protein-coding
237541	chrX	120454171	120454350	+	0	NA	intron (NM_002294, intron 3 of 8)	Tigger7|DNA|TcMar-Tigger	15036	NM_002294	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
92551	chr17	8956471	8956980	+	0	NA	intron (NM_001142633, intron 1 of 18)	intron (NM_001142633, intron 1 of 18)	8982	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
171688	chr3	197754851	197755150	+	0	NA	intron (NR_027840, intron 1 of 8)	intron (NR_027840, intron 1 of 8)	4753	NR_027840	84248		NM_032288	ENSG00000122068	FYTTD1	UIF	forty-two-three domain containing 1	protein-coding
178485	chr4	149031551	149031650	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-89222	NR_134681	105377480		NR_134681	ENSG00000249317	LOC105377480	-	uncharacterized LOC105377480	ncRNA
88834	chr16	87489601	87489800	+	0	NA	intron (NM_015144, intron 1 of 12)	intron (NM_015144, intron 1 of 12)	3324	NM_015144	23174		NM_015144	ENSG00000140948	ZCCHC14	BDG-29|BDG29	zinc finger CCHC-type containing 14	protein-coding
75252	chr15	64904171	64904630	+	0	NA	Intergenic	Intergenic	-7502	NM_182703	348094		NM_182703	ENSG00000166839	ANKDD1A	-	ankyrin repeat and death domain containing 1A	protein-coding
190097	chr5	177846551	177846930	+	0	NA	Intergenic	Intergenic	-28521	NR_003615	728554		NR_003615	ENSG00000291113	LOC728554	-	THO complex 3 pseudogene	pseudo
174008	chr4	26362221	26362480	+	0	NA	intron (NM_001374403, intron 1 of 11)	intron (NM_001374403, intron 1 of 11)	19210	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
216507	chr8	20265651	20266350	+	0	NA	intron (NM_021020, intron 1 of 3)	intron (NM_021020, intron 1 of 3)	7535	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
83476	chr16	27382301	27382580	+	0	NA	Intergenic	L2a|LINE|L2	-19734	NM_181079	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
133520	chr2	120206271	120206630	+	0	NA	Intergenic	Intergenic	16950	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
128320	chr2	54664421	54664750	+	0	NA	exon (NM_003128, exon 33 of 36)	exon (NM_003128, exon 33 of 36)	-60427	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
198143	chr6	90478071	90478580	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	108747	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
66526	chr14	61750251	61750350	+	0	NA	intron (NR_144368, intron 1 of 2)	intron (NR_144368, intron 1 of 2)	797	NR_144368	105370526		NR_144368	ENSG00000258667	HIF1A-AS3	HIFAL	HIF1A antisense RNA 3	ncRNA
53659	chr12	68367721	68368380	+	0	NA	Intergenic	Intergenic	-35636	NM_001354972	56890		NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
89796	chr16	89502771	89504180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4913	NM_001363850	6687		NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7 matrix AAA peptidase subunit, paraplegin	protein-coding
203073	chr6	166306871	166307550	+	0	NA	3' UTR (NM_175922, exon 1 of 1)	3' UTR (NM_175922, exon 1 of 1)	1182	NM_175922	285800		NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding
109962	chr19	1387021	1387280	+	0	NA	intron (NM_001363602, intron 1 of 7)	intron (NM_001363602, intron 1 of 7)	3243	NM_001363602	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
41667	chr11	66587771	66588280	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	5038	NM_018219	55231		NM_018219	ENSG00000182791	CCDC87	-	coiled-coil domain containing 87	protein-coding
12418	chr1	101357221	101357950	+	0	NA	intron (NR_126402, intron 4 of 4)	intron (NR_126402, intron 4 of 4)	33748	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
157660	chr22	46239451	46240050	+	0	NA	3' UTR (NM_001362873, exon 9 of 9)	3' UTR (NM_001362873, exon 9 of 9)	10543	NM_207327	150383		NM_207327	ENSG00000205643	CDPF1	C22orf40|CDKN1A	cysteine rich DPF motif domain containing 1	protein-coding
136013	chr2	172433601	172434030	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	6229	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
214199	chr7	148575501	148576100	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-14966	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
14975	chr1	147999021	147999280	+	0	NA	intron (NR_111936, intron 7 of 9)	L3|LINE|CR1	15806	NR_111936	100034743		NR_003377		PDZK1P1	PDZK1P2	PDZ domain containing 1 pseudogene 1	pseudo
73391	chr15	42580021	42580350	+	0	NA	intron (NM_020759, intron 1 of 32)	intron (NM_020759, intron 1 of 32)	4579	NM_020759	57519		NM_020759	ENSG00000159433	STARD9	KIF16A	StAR related lipid transfer domain containing 9	protein-coding
147661	chr20	62243821	62244180	+	0	NA	intron (NM_144498, intron 1 of 13)	intron (NM_144498, intron 1 of 13)	5479	NM_001278649	9885		NM_014835	ENSG00000130703	OSBPL2	DFNA67|DNFA67|ORP-2|ORP2	oxysterol binding protein like 2	protein-coding
239264	chrY	13471821	13472450	+	0	NA	intron (NR_047598, intron 2 of 30)	L1M4c|LINE|L1	-7042	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
54307	chr12	89468401	89469980	+	0	NA	intron (NM_172240, intron 7 of 11)	AluSx|SINE|Alu	55606	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
20844	chr1	201827821	201828250	+	0	NA	intron (NR_046696, intron 1 of 2)	AluJo|SINE|Alu	-1122	NM_018085	55705		NM_018085	ENSG00000198700	IPO9	Imp9	importin 9	protein-coding
214042	chr7	143359821	143360380	+	0	NA	exon (NM_001031690, exon 2 of 7)	exon (NM_001031690, exon 2 of 7)	1980	NM_014690	9715		NM_014690	ENSG00000159784	FAM131B	-	family with sequence similarity 131 member B	protein-coding
157589	chr22	45999101	45999300	+	0	NA	Intergenic	Intergenic	-7416	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
144103	chr20	33830001	33830200	+	0	NA	intron (NM_176812, intron 1 of 4)	intron (NM_176812, intron 1 of 4)	18752	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
126969	chr2	36247271	36247430	+	0	NA	Intergenic	Intergenic	108220	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
22751	chr1	224375121	224376030	+	0	NA	intron (NM_001277200, intron 4 of 4)	intron (NM_001277200, intron 4 of 4)	18696	NM_014184	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
206084	chr7	27186121	27186680	+	0	NA	intron (NR_002795, intron 1 of 1)	intron (NR_002795, intron 1 of 1)	992	NR_002795	221883		NR_002795	ENSG00000240990	HOXA11-AS	HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|LncHOXA11|NCRNA00076	HOXA11 antisense RNA	ncRNA
71453	chr14	105711771	105712450	+	0	NA	Intergenic	Intergenic	-39303	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
209069	chr7	74784671	74785480	+	0	NA	intron (NM_000265, intron 7 of 10)	intron (NM_000265, intron 7 of 10)	11113	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
139067	chr2	218856371	218857350	+	0	NA	Intergenic	Intergenic	-2945	NM_006522	7475		NM_006522	ENSG00000115596	WNT6	-	Wnt family member 6	protein-coding
129984	chr2	74017201	74017550	+	0	NA	intron (NM_001366022, intron 2 of 10)	L1MA5|LINE|L1	14683	NM_001366022	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
47110	chr12	671801	672450	+	0	NA	Intergenic	L1MC5|LINE|L1	-8680	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
158152	chr22	50191201	50192050	+	0	NA	intron (NM_001320487, intron 1 of 9)	intron (NM_001320487, intron 1 of 9)	1038	NM_001320487	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
72907	chr15	40347121	40347600	+	0	NA	Intergenic	Intergenic	-3673	NM_001145643	644844		NM_001145643	ENSG00000233041	PHGR1	-	proline, histidine and glycine rich 1	protein-coding
147805	chr20	62649321	62649850	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	7082	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
138406	chr2	204971221	204971680	+	0	NA	intron (NM_205863, intron 3 of 21)	intron (NM_205863, intron 3 of 21)	425975	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
140962	chr2	237905051	237905930	+	0	NA	intron (NM_005855, intron 2 of 2)	intron (NM_005855, intron 2 of 2)	45867	NM_005855	10267		NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding
105731	chr18	2729701	2729900	+	0	NA	intron (NM_015295, intron 24 of 47)	AluJr|SINE|Alu	74074	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
181265	chr5	39258921	39259180	+	0	NA	intron (NM_001243093, intron 1 of 18)	MER20|DNA|hAT-Charlie	11599	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
151035	chr21	44616021	44616480	+	0	NA	intron (NM_144991, intron 1 of 11)	intron (NM_144991, intron 1 of 11)	4171	NM_198695	386681		NM_198695	ENSG00000187766	KRTAP10-8	KAP10.8|KRTAP18-8|KRTAP18.8	keratin associated protein 10-8	protein-coding
230461	chr9	128202801	128203630	+	0	NA	promoter-TSS (NM_001005336)	promoter-TSS (NM_001005336)	-164	NM_001374269	1759		NM_004408	ENSG00000106976	DNM1	DEE31|DEE31A|DEE31B|DNM|EIEE31	dynamin 1	protein-coding
10075	chr1	58780501	58781300	+	0	NA	3' UTR (NM_002228, exon 1 of 1)	3' UTR (NM_002228, exon 1 of 1)	3147	NM_002228	3725		NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun|cJUN|p39	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding
106287	chr18	12726821	12727580	+	0	NA	Intergenic	Intergenic	22222	NR_110763	100996324		NR_110763		LINC01882	-	long intergenic non-protein coding RNA 1882	ncRNA
4685	chr1	22889201	22889430	+	0	NA	intron (NM_017449, intron 6 of 15)	intron (NM_017449, intron 6 of 15)	-26089	NR_036214	100422914		NR_036214	ENSG00000264014	MIR4253	-	microRNA 4253	ncRNA
16421	chr1	154546201	154546880	+	0	NA	intron (NM_001098475, intron 11 of 11)	intron (NM_001098475, intron 11 of 11)	-7069	NR_046668	100874097		NR_046668	ENSG00000229780	UBE2Q1-AS1	-	UBE2Q1 antisense RNA 1	ncRNA
28867	chr10	62690511	62691150	+	0	NA	Intergenic	Intergenic	-113890	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
236289	chrX	66625621	66625880	+	0	NA	intron (NM_001324202, intron 1 of 4)	L1PB1|LINE|L1	-9720	NM_001242310	60401		NM_021783	ENSG00000131080	EDA2R	EDA-A2R|EDAA2R|TNFRSF27|XEDAR	ectodysplasin A2 receptor	protein-coding
67900	chr14	74571871	74572630	+	0	NA	intron (NM_000428, intron 3 of 35)	intron (NM_000428, intron 3 of 35)	39987	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
41378	chr11	65988701	65989800	+	0	NA	Intergenic	Intergenic	-12829	NM_001143985	8815		NM_003860	ENSG00000175334	BANF1	BAF|BCRP1|D14S1460|NGPS	BAF nuclear assembly factor 1	protein-coding
230790	chr9	128947051	128948950	+	0	NA	promoter-TSS (NM_014908)	promoter-TSS (NM_014908)	301	NM_015354	23511		NM_015354	ENSG00000095319	NUP188	KIAA0169|SANDSTEF|hNup188	nucleoporin 188	protein-coding
185094	chr5	119075271	119076030	+	0	NA	intron (NM_001290321, intron 1 of 43)	intron (NM_001290321, intron 1 of 43)	4563	NM_001290322	1657		NM_005509	ENSG00000172869	DMXL1	-	Dmx like 1	protein-coding
79885	chr16	1541201	1541400	+	0	NA	intron (NM_024600, intron 1 of 2)	intron (NM_024600, intron 1 of 2)	7634	NM_024600	79652		NM_024600	ENSG00000131634	TMEM204	C16orf30|CLP24	transmembrane protein 204	protein-coding
119681	chr19	40909151	40909250	+	0	NA	Intergenic	Intergenic	-15065	NR_001278	1556		NR_001278	ENSG00000291083	CYP2B7P	CYP2B|CYP2B7|CYP2B7P1	cytochrome P450 family 2 subfamily B member 7, pseudogene	pseudo
114949	chr19	13985801	13987600	+	0	NA	intron (NM_002918, intron 2 of 20)	intron (NM_002918, intron 2 of 20)	19620	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
190373	chr5	179749601	179750050	+	0	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	17003	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
226062	chr9	61860221	61860750	+	0	NA	Intergenic	SST1|Satellite|centr	2130	NR_144466	105379807		NR_144466		LOC105379807	-	uncharacterized LOC105379807	ncRNA
3101	chr1	12206171	12206750	+	0	NA	intron (NM_001066, intron 9 of 9)	AluJo|SINE|Alu	14747	NR_039775	100616438		NR_039775	ENSG00000263676	MIR4632	-	microRNA 4632	ncRNA
895	chr1	1665521	1666350	+	0	NA	exon (NM_001290264, exon 10 of 10)	exon (NM_001290264, exon 10 of 10)	-6931	NM_001787	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
61812	chr13	75634051	75634550	+	0	NA	intron (NM_005358, intron 2 of 29)	AluJr4|SINE|Alu	1694	NR_120411	101927155		NR_120410	ENSG00000261105	LMO7-AS1	UCHL3-AS1	LMO7 antisense RNA 1	ncRNA
184800	chr5	111228851	111229330	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	4706	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
229528	chr9	122826551	122826730	+	0	NA	exon (NM_005388, exon 2 of 4)	exon (NM_005388, exon 2 of 4)	1948	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
192075	chr6	16657371	16658330	+	0	NA	5' UTR (NM_001357857, exon 4 of 9)	5' UTR (NM_001357857, exon 4 of 9)	102334	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
90409	chr17	1329271	1329630	+	0	NA	Intergenic	Intergenic	49788	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
27800	chr10	35639321	35639730	+	0	NA	exon (NM_031866, exon 1 of 1)	exon (NM_031866, exon 1 of 1)	1727	NR_039831	100616500		NR_039831	ENSG00000284265	MIR4683	-	microRNA 4683	ncRNA
55292	chr12	103434521	103435180	+	0	NA	intron (NR_103526, intron 2 of 10)	L1PA2|LINE|L1	61118	NM_001278419	374470		NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
171326	chr3	195986571	195986730	+	0	NA	intron (NR_003264, intron 1 of 16)	intron (NR_003264, intron 1 of 16)	3629	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
21912	chr1	207828251	207828930	+	0	NA	Intergenic	Intergenic	-5887	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
189419	chr5	172832071	172832730	+	0	NA	Intergenic	AluSx|SINE|Alu	-1851	NM_001031711	57222		NM_020462	ENSG00000113719	ERGIC1	AMC2|AMCN|ERGIC-32|ERGIC32|NET24	endoplasmic reticulum-golgi intermediate compartment 1	protein-coding
64044	chr14	22533971	22534130	+	0	NA	Intergenic	MIR3|SINE|MIR	23012	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
94718	chr17	30714751	30715850	+	0	NA	intron (NR_144394, intron 1 of 8)	intron (NR_144394, intron 1 of 8)	5692	NR_144394	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
209363	chr7	76283721	76284250	+	0	NA	intron (NM_001291831, intron 15 of 15)	MIR3|SINE|MIR	-18688	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
99274	chr17	49748171	49750000	+	0	NA	intron (NM_030802, intron 1 of 7)	intron (NM_030802, intron 1 of 7)	15046	NM_030802	81558		NM_030802	ENSG00000121104	FAM117A	-	family with sequence similarity 117 member A	protein-coding
27461	chr10	32004051	32004400	+	0	NA	Intergenic	Intergenic	52200	NM_004521	3799		NM_004521	ENSG00000170759	KIF5B	HEL-S-61|KINH|KNS|KNS1|UKHC	kinesin family member 5B	protein-coding
204208	chr7	2513921	2514580	+	0	NA	intron (NM_001166355, intron 2 of 8)	intron (NM_001166355, intron 2 of 8)	1721	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
54936	chr12	96212121	96213080	+	0	NA	intron (NM_005230, intron 1 of 4)	intron (NM_005230, intron 1 of 4)	18225	NM_005230	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
15784	chr1	151195921	151197080	+	0	NA	Intergenic	Intergenic	-2052	NM_001135638	8394		NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein-coding
187617	chr5	142973471	142974000	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-104825	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
88140	chr16	81625721	81625980	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	14502	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
157948	chr22	49799621	49800330	+	0	NA	intron (NR_146335, intron 4 of 13)	intron (NR_146335, intron 4 of 13)	24356	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
34961	chr11	492071	492230	+	0	NA	TTS (NM_001329544).2	TTS (NM_001329544).2	14618	NM_002939	6050		NM_002939	ENSG00000023191	RNH1	IIAE12|RAI|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding
190079	chr5	177772421	177772680	+	0	NA	intron (NR_146226, intron 2 of 28)	L1HS|LINE|L1	10370	NR_146227	285596		NM_173663	ENSG00000170074	FAM153A	NY-REN-7	family with sequence similarity 153 member A	protein-coding
96593	chr17	40528601	40529630	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-27492	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
215260	chr7	156999071	156999230	+	0	NA	Intergenic	Intergenic	-7157	NR_147077	105375606		NR_147077	ENSG00000235029	MNX1-AS2	-	MNX1 antisense RNA 2	ncRNA
64552	chr14	24607801	24608030	+	0	NA	intron (NM_033423, intron 2 of 4)	intron (NM_033423, intron 2 of 4)	1770	NM_001270781	2999		NM_033423	ENSG00000100450	GZMH	CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2	granzyme H	protein-coding
205052	chr7	6579771	6579930	+	0	NA	intron (NM_001371297, intron 2 of 7)	intron (NM_001371297, intron 2 of 7)	2396	NR_163913	55146		NM_018106	ENSG00000136247	ZDHHC4	ZNF374	zinc finger DHHC-type palmitoyltransferase 4	protein-coding
221220	chr8	120956701	120957000	+	0	NA	Intergenic	Intergenic	-144804	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
68967	chr14	91427051	91428080	+	0	NA	Intergenic	THE1B-int|LTR|ERVL-MaLR	-9745	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
39904	chr11	62511651	62511750	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	33964	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
206317	chr7	30284001	30286900	+	0	NA	exon (NM_147128, exon 1 of 5)	exon (NM_147128, exon 1 of 5)	635	NR_136267	105375218		NR_136267		LOC105375218	-	uncharacterized LOC105375218	ncRNA
35536	chr11	1576271	1576430	+	0	NA	intron (NR_021489, intron 1 of 1).3	AluY|SINE|Alu	3609	NR_021489	338651		NR_021489	ENSG00000233930	KRTAP5-AS1	-	KRTAP5-1/KRTAP5-2 antisense RNA 1	ncRNA
162844	chr3	49297571	49297730	+	0	NA	intron (NM_199443, intron 12 of 20)	intron (NM_199443, intron 12 of 20)	-20418	NM_198562	375341		NM_198562	ENSG00000188315	C3orf62	MAPS	chromosome 3 open reading frame 62	protein-coding
136319	chr2	175108621	175108880	+	0	NA	intron (NR_045772, intron 10 of 14)	SVA_C|Retroposon|SVA	58959	NR_030630	100126350		NR_030630	ENSG00000215973	MIR933	MIRN933|hsa-mir-933|mir-933	microRNA 933	ncRNA
26438	chr10	17248901	17249100	+	0	NA	Intergenic	L1M5|LINE|L1	-19015	NR_108061	100507347		NR_108060	ENSG00000229124	VIM-AS1	-	VIM antisense RNA 1	ncRNA
105609	chr18	712201	713500	+	0	NA	promoter-TSS (NM_202758)	promoter-TSS (NM_202758)	-186	NR_148711	55556		NM_017512	ENSG00000132199	ENOSF1	FUCD|RTS|TYMSAS	enolase superfamily member 1	protein-coding
203379	chr6	170467501	170467700	+	0	NA	Intergenic	Intergenic	85707	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
133377	chr2	118032421	118032730	+	0	NA	Intergenic	Intergenic	-18505	NM_019044	54520		NM_019044	ENSG00000125633	CCDC93	-	coiled-coil domain containing 93	protein-coding
128577	chr2	60905551	60905650	+	0	NA	intron (NM_001291746, intron 4 of 9)	intron (NM_001291746, intron 4 of 9)	24026	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
113241	chr19	8491721	8492200	+	0	NA	intron (NM_032152, intron 4 of 9)	AluSq2|SINE|Alu	10680	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
235607	chrX	47789071	47789380	+	0	NA	Intergenic	L1PA2|LINE|L1	-47677	NM_001378152	347344		NM_007137	ENSG00000197779	ZNF81	HFZ20|MRX45|dJ54B20.6	zinc finger protein 81	protein-coding
214924	chr7	151518901	151520750	+	0	NA	promoter-TSS (NM_005614)	promoter-TSS (NM_005614)	70	NM_005614	6009		NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog, mTORC1 binding	protein-coding
187789	chr5	146207021	146207680	+	0	NA	intron (NM_018989, intron 1 of 20)	AluSx3|SINE|Alu	3745	NM_018989	54439		NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18|ZC3H20	RNA binding motif protein 27	protein-coding
60944	chr13	46386921	46387780	+	0	NA	promoter-TSS (NM_001286764)	promoter-TSS (NM_001286764)	-98	NM_001349772	80183		NM_025113	ENSG00000102445	RUBCNL	C13orf18|KIAA0226L|PACER	rubicon like autophagy enhancer	protein-coding
217118	chr8	25165251	25165350	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-19389	NM_001322810	80005		NM_024940	ENSG00000147459	DOCK5	-	dedicator of cytokinesis 5	protein-coding
51569	chr12	52606801	52607000	+	0	NA	TTS (NM_175068)	TTS (NM_175068)	-2951	NR_126005	100127967		NR_126005	ENSG00000257495	KRT73-AS1	-	KRT73 antisense RNA 1	ncRNA
91916	chr17	7314841	7316450	+	0	NA	promoter-TSS (NM_004489)	promoter-TSS (NM_004489)	-285	NM_004489	2874		NM_004489	ENSG00000132522	GPS2	AMF-1	G protein pathway suppressor 2	protein-coding
55561	chr12	106113051	106113550	+	0	NA	intron (NM_014840, intron 1 of 6)	intron (NM_014840, intron 1 of 6)	26733	NM_014840	9891		NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
72336	chr15	31312571	31312930	+	0	NA	Intergenic	Intergenic	-14085	NM_001302461	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
168626	chr3	149658361	149658980	+	0	NA	promoter-TSS (NM_015472)	promoter-TSS (NM_015472)	460	NR_040250	100128025		NR_040250	ENSG00000241313	WWTR1-AS1	-	WWTR1 antisense RNA 1	ncRNA
73856	chr15	50135021	50135280	+	0	NA	Intergenic	Intergenic	-15917	NR_073597	79895		NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
43557	chr11	82989271	82989430	+	0	NA	intron (NM_014488, intron 4 of 5)	MamRTE1|LINE|RTE-BovB	44924	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
198392	chr6	105650221	105650750	+	0	NA	Intergenic	Intergenic	-247403	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
235957	chrX	53421771	53423150	+	0	NA	promoter-TSS (NM_144968)	promoter-TSS (NM_144968)	194	NM_006306	8243		NM_006306	ENSG00000072501	SMC1A	CDLS2|DEE85|DXS423E|EIEE85|SB1.8|SMC1|SMC1L1|SMC1alpha|SMCB	structural maintenance of chromosomes 1A	protein-coding
81873	chr16	11670221	11671280	+	0	NA	intron (NM_003498, intron 1 of 1)	intron (NM_003498, intron 1 of 1)	2295	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
51738	chr12	53229051	53229680	+	0	NA	intron (NM_000966, intron 2 of 9)	(GTTTTT)n|Simple_repeat|Simple_repeat	2844	NM_000966	5916		NM_000966	ENSG00000172819	RARG	NR1B3|RARC|RARgamma	retinoic acid receptor gamma	protein-coding
105959	chr18	4510751	4510960	+	0	NA	Intergenic	(GTG)n|Simple_repeat|Simple_repeat	-55548	NM_004746	9229		NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding
36363	chr11	3944121	3944730	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	88363	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
224621	chr9	20524851	20525400	+	0	NA	intron (NM_001286691, intron 2 of 10)	A-rich|Low_complexity|Low_complexity	-22783	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
50036	chr12	43832401	43833100	+	0	NA	Intergenic	MIR|SINE|MIR	-3111	NM_001286211	84216		NM_032256	ENSG00000139173	TMEM117	-	transmembrane protein 117	protein-coding
131891	chr2	98738651	98739030	+	0	NA	Intergenic	Intergenic	-7708	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
30061	chr10	73857401	73858700	+	0	NA	intron (NM_172173, intron 3 of 19)	L1MC1|LINE|L1	16505	NM_001367547	818		NM_001222	ENSG00000148660	CAMK2G	CAMK|CAMK-II|CAMKG|MRD59	calcium/calmodulin dependent protein kinase II gamma	protein-coding
216886	chr8	22667601	22667800	+	0	NA	intron (NR_156436, intron 1 of 9)	intron (NR_156436, intron 1 of 9)	1421	NM_018688	55909		NM_018688	ENSG00000147439	BIN3	-	bridging integrator 3	protein-coding
114588	chr19	12936471	12937000	+	0	NA	Intergenic	L2a|LINE|L2	-1874	NM_004343	811		NM_004343	ENSG00000179218	CALR	CALR1|CRT|HEL-S-99n|RO|SSA|cC1qR	calreticulin	protein-coding
220629	chr8	100939681	100940350	+	0	NA	intron (NM_001135702, intron 2 of 5)	AluY|SINE|Alu	10556	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
113823	chr19	10610251	10610580	+	0	NA	intron (NM_001145056, intron 1 of 21)	AluY|SINE|Alu	7960	NM_001145056	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
184214	chr5	95963971	95964130	+	0	NA	intron (NR_130776, intron 1 of 4)	intron (NR_130776, intron 1 of 4)	2049	NR_130776	101929710		NR_130776	ENSG00000251314	LOC101929710	-	uncharacterized LOC101929710	ncRNA
206536	chr7	35073351	35073730	+	0	NA	Intergenic	Intergenic	-35499	NM_015283	23333		NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like C-mannosyltransferase 1	protein-coding
10493	chr1	66381421	66381880	+	0	NA	Intergenic	L2a|LINE|L2	27115	NM_001297442	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
104838	chr17	81831301	81832500	+	0	NA	intron (NM_001288798, intron 1 of 6)	intron (NM_001288798, intron 1 of 6)	1391	NM_001288798	348262		NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
182589	chr5	65989121	65989380	+	0	NA	intron (NM_001253697, intron 2 of 25)	intron (NM_001253697, intron 2 of 25)	-43677	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
90670	chr17	1709401	1710630	+	0	NA	intron (NM_001164407, intron 1 of 3)	CpG	362	NM_001164407	727910		NM_001164407	ENSG00000185561	TLCD2	-	TLC domain containing 2	protein-coding
140134	chr2	231554051	231555700	+	0	NA	Intergenic	Intergenic	-24430	NM_006056	10316		NM_006056	ENSG00000171596	NMUR1	(FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R	neuromedin U receptor 1	protein-coding
114976	chr19	14027251	14027550	+	0	NA	promoter-TSS (NM_001311197)	promoter-TSS (NM_001311197)	-748	NM_001311197	117579		NM_080864	ENSG00000171136	RLN3	H3|RXN3|ZINS4|insl7	relaxin 3	protein-coding
206811	chr7	36987071	36987680	+	0	NA	intron (NM_014800, intron 16 of 21)	intron (NM_014800, intron 16 of 21)	-1109	NM_130442	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
8424	chr1	40477071	40478230	+	0	NA	5' UTR (NM_198494, exon 1 of 6)	5' UTR (NM_198494, exon 1 of 6)	360	NM_001320178	339559		NM_198494	ENSG00000187815	ZFP69	ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A	ZFP69 zinc finger protein	protein-coding
2713	chr1	10651671	10651830	+	0	NA	intron (NM_017766, intron 11 of 15)	intron (NM_017766, intron 11 of 15)	144896	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
133871	chr2	128754201	128754400	+	0	NA	Intergenic	Intergenic	-110300	NR_110278	101927881		NR_110278		LOC101927881	-	uncharacterized LOC101927881	ncRNA
143262	chr20	25083351	25083980	+	0	NA	Intergenic	CpG	-1524	NM_001256271	30813		NM_014588	ENSG00000100987	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
21657	chr1	206688721	206688980	+	0	NA	intron (NM_032960, intron 1 of 9)	AluY|SINE|Alu	3945	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
166378	chr3	113223921	113224180	+	0	NA	intron (NM_001378075, intron 2 of 19)	intron (NM_001378075, intron 2 of 19)	11934	NM_001301861	91653		NM_033254	ENSG00000144857	BOC	Boi|CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding
98639	chr17	47814171	47814730	+	0	NA	intron (NM_145798, intron 14 of 22)	intron (NM_145798, intron 14 of 22)	7344	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
179028	chr4	165115621	165115880	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2890	NM_001100389	201931		NM_152681	ENSG00000170088	TMEM192	-	transmembrane protein 192	protein-coding
150785	chr21	43861901	43862300	+	0	NA	Intergenic	AluJb|SINE|Alu	-3123	NM_020132	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
63404	chr13	114076451	114076780	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	1340	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
127021	chr2	36968551	36968850	+	0	NA	Intergenic	MER51B|LTR|ERV1	-2164	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
182660	chr5	67208471	67208650	+	0	NA	Intergenic	Intergenic	-11761	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
118108	chr19	34481621	34482080	+	0	NA	promoter-TSS (NM_001080436)	promoter-TSS (NM_001080436)	92	NM_001080436	126374		NM_001080436	ENSG00000142279	WTIP	-	WT1 interacting protein	protein-coding
230338	chr9	128005751	128006450	+	0	NA	Intergenic	Intergenic	-25111	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
92237	chr17	7908871	7909030	+	0	NA	intron (NM_001005271, intron 36 of 39)	intron (NM_001005271, intron 36 of 39)	2827	NR_003000	677763		NR_003000	ENSG00000252835	SCARNA21	ACA68|SCARNA21A	small Cajal body-specific RNA 21	ncRNA
42761	chr11	72737701	72738000	+	0	NA	intron (NM_001040118, intron 1 of 34)	AluJb|SINE|Alu	14539	NM_001040118	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
173718	chr4	15805721	15806330	+	0	NA	intron (NR_132660, intron 1 of 6)	intron (NR_132660, intron 1 of 6)	27697	NR_132660	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
176562	chr4	98617551	98617850	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	40911	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
115183	chr19	14437621	14438550	+	0	NA	intron (NM_002741, intron 1 of 21)	AluJr|SINE|Alu	-2192	NM_213560	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
16509	chr1	154911021	154911280	+	0	NA	Intergenic	Intergenic	25569	NM_006556	10654		NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding
201399	chr6	145836271	145836450	+	0	NA	intron (NR_038246, intron 2 of 2)	intron (NR_038246, intron 2 of 2)	21484	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
131397	chr2	96267101	96268630	+	0	NA	exon (NM_004804, exon 4 of 7)	exon (NM_004804, exon 4 of 7)	1640	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
85663	chr16	56277451	56277880	+	0	NA	intron (NM_020988, intron 3 of 8)	intron (NM_020988, intron 3 of 8)	32145	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
196930	chr6	52407501	52407780	+	0	NA	3' UTR (NM_133367, exon 2 of 2)	3' UTR (NM_133367, exon 2 of 2)	-12702	NR_033327	114327		NM_018100	ENSG00000096093	EFHC1	EJM1|POC9|RIB72|dJ304B14.2	EF-hand domain containing 1	protein-coding
109134	chr18	80177871	80178250	+	0	NA	intron (NR_028340, intron 2 of 2)	intron (NR_028340, intron 2 of 2)	30136	NR_028340	100130522		NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
218439	chr8	47905321	47905850	+	0	NA	intron (NM_006904, intron 25 of 85)	LTR68|LTR|ERV1	54551	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
82984	chr16	21986801	21987000	+	0	NA	intron (NM_001370530, intron 4 of 4)	L2c|LINE|L2	14216	NM_001370530	255762		NM_173806	ENSG00000155714	PDZD9	C16orf65	PDZ domain containing 9	protein-coding
78556	chr15	93001721	93002180	+	0	NA	intron (NM_001271, intron 32 of 38)	MIRb|SINE|MIR	71206	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
2686	chr1	10628871	10629030	+	0	NA	intron (NM_004565, intron 8 of 8)	intron (NM_004565, intron 8 of 8)	154000	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
48857	chr12	12413051	12413480	+	0	NA	intron (NM_058169, intron 2 of 3)	SVA_E|Retroposon|SVA	56187	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
194071	chr6	31870351	31870900	+	0	NA	exon (NM_001178044, exon 10 of 20).3	exon (NM_001178044, exon 10 of 20).3	7046	NM_001178045	80736		NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1	solute carrier family 44 member 4	protein-coding
69384	chr14	94035351	94035850	+	0	NA	intron (NM_023112, intron 1 of 5)	intron (NM_023112, intron 1 of 5)	9260	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
17701	chr1	158221351	158221450	+	0	NA	Intergenic	L1PA4|LINE|L1	-26936	NM_001320652	909		NM_001763	ENSG00000158477	CD1A	CD1|FCB6|HTA1|R4|T6	CD1a molecule	protein-coding
238122	chrX	136659171	136659330	+	0	NA	exon (NM_000074, exon 5 of 5)	exon (NM_000074, exon 5 of 5)	11092	NM_000074	959		NM_000074	ENSG00000102245	CD40LG	CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L	CD40 ligand	protein-coding
73021	chr15	40768451	40768750	+	0	NA	TTS (NM_005258)	TTS (NM_005258)	-1380	NM_001130448	643338		NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding
235365	chrX	44890121	44890580	+	0	NA	intron (NM_001291416, intron 2 of 28)	L1MD1|LINE|L1	17162	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
176475	chr4	89490501	89490730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-182815	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
93949	chr17	21378001	21378600	+	0	NA	intron (NM_021012, intron 1 of 2)	intron (NM_021012, intron 1 of 2)	1943	NM_021012	3768		NM_021012	ENSG00000184185	KCNJ12	IRK-2|IRK2|KCNJN1|Kir2.2|hIRK|hIRK1|hkir2.2x|kcnj12x	potassium inwardly rectifying channel subfamily J member 12	protein-coding
123481	chr19	54180001	54180900	+	0	NA	intron (NM_024298, intron 6 of 7).3	intron (NM_024298, intron 6 of 7).3	-7290	NM_144686	147798		NM_144686	ENSG00000167608	TMC4	-	transmembrane channel like 4	protein-coding
99754	chr17	50953921	50954380	+	0	NA	Intergenic	Intergenic	-86172	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
109616	chr19	946151	946850	+	0	NA	intron (NM_005224, intron 3 of 8)	AluSx1|SINE|Alu	20465	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
110941	chr19	2838301	2838500	+	0	NA	Intergenic	AluSx|SINE|Alu	-3075	NM_001172775	148254		NM_152791	ENSG00000186300	ZNF555	-	zinc finger protein 555	protein-coding
209110	chr7	74932021	74932430	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-17147	NM_001382555	100101268		NM_001382555	ENSG00000184616	SPDYE12	SPDYE12P	speedy/RINGO cell cycle regulator family member E12	protein-coding
108299	chr18	63342121	63342600	+	0	NA	intron (NM_002035, intron 7 of 9)	HAL1|LINE|L1	-22591	NM_000657	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
238297	chrX	149489701	149490380	+	0	NA	intron (NM_006123, intron 7 of 7)	intron (NM_006123, intron 7 of 7)	15266	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
225915	chr9	40222121	40222380	+	0	NA	Intergenic	CpG	-101321	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
65587	chr14	52043671	52043980	+	0	NA	intron (NM_007361, intron 5 of 21)	intron (NM_007361, intron 5 of 21)	25234	NM_007361	22795		NM_007361	ENSG00000087303	NID2	NID-2	nidogen 2	protein-coding
228453	chr9	99839621	99839880	+	0	NA	intron (NM_173200, intron 6 of 8)	intron (NM_173200, intron 6 of 8)	17865	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
182948	chr5	71214471	71215080	+	0	NA	intron (NR_146391, intron 3 of 9)	intron (NR_146391, intron 3 of 9)	-6644	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
18284	chr1	161124821	161125080	+	0	NA	3' UTR (NM_001185092, exon 7 of 7)	3' UTR (NM_001185092, exon 7 of 7)	6832	NM_001185094	4817		NM_005600	ENSG00000158793	NIT1	-	nitrilase 1	protein-coding
152617	chr22	21421971	21422830	+	0	NA	intron (NM_015094, intron 1 of 2)	MER5B|DNA|hAT-Charlie	5029	NM_015094	23119		NM_015094	ENSG00000169635	HIC2	HRG22|ZBTB30|ZNF907	HIC ZBTB transcriptional repressor 2	protein-coding
112697	chr19	7071851	7072150	+	0	NA	intron (NM_024341, intron 2 of 7)	AluY|SINE|Alu	2297	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
51820	chr12	53444171	53444780	+	0	NA	intron (NM_001005354, intron 3 of 3)	AluYk11|SINE|Alu	2741	NM_018457	54458		NM_018457	ENSG00000205352	PRR13	TXR1	proline rich 13	protein-coding
120644	chr19	45072871	45073100	+	0	NA	intron (NM_145288, intron 2 of 2)	AluSx1|SINE|Alu	-2642	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
32376	chr10	102405631	102406530	+	0	NA	intron (NM_001270965, intron 12 of 17)	intron (NM_001270965, intron 12 of 17)	3197	NR_073110	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
1782	chr1	6098471	6098830	+	0	NA	3' UTR (NM_003636, exon 16 of 16)	3' UTR (NM_003636, exon 16 of 16)	52762	NM_001199863	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
47451	chr12	3750551	3751130	+	0	NA	intron (NM_032680, intron 1 of 10)	intron (NM_032680, intron 1 of 10)	2269	NM_032680	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
203346	chr6	170287501	170287930	+	0	NA	intron (NM_005618, intron 4 of 10)	intron (NM_005618, intron 4 of 10)	-2988	NM_001286379	84498		NM_032448	ENSG00000112584	FAM120B	CCPG|KIAA1838|PGCC1|SAN1|dJ894D12.1	family with sequence similarity 120 member B	protein-coding
104467	chr17	81116171	81116430	+	0	NA	TTS (NM_004920)	TTS (NM_004920)	9073	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA
163522	chr3	51498451	51498550	+	0	NA	intron (NM_014703, intron 1 of 25)	AluJb|SINE|Alu	1502	NM_001171904	9730		NM_014703	ENSG00000145041	DCAF1	RIP|VPRBP	DDB1 and CUL4 associated factor 1	protein-coding
6696	chr1	29174651	29174950	+	0	NA	intron (NM_005626, intron 1 of 5)	AluSc|SINE|Alu	7100	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
234469	chrX	17779221	17779680	+	0	NA	Intergenic	Intergenic	41957	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
81001	chr16	4110601	4110800	+	0	NA	intron (NM_001116, intron 2 of 10)	MER66B|LTR|ERV1	5742	NM_001116	115		NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
45877	chr11	119727521	119728200	+	0	NA	intron (NM_203286, intron 1 of 5)	CpG	1340	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
85009	chr16	31505521	31506230	+	0	NA	intron (NM_022744, intron 2 of 12)	Tigger4|DNA|TcMar-Tigger	2516	NM_022744	64755		NM_022744	ENSG00000140688	RUSF1	C16orf58|RUS	RUS family member 1	protein-coding
237416	chrX	119619471	119619630	+	0	NA	3' UTR (NM_145799, exon 11 of 11)	3' UTR (NM_145799, exon 11 of 11)	-13126	NR_163972	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
75576	chr15	67074221	67074850	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	8933	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
58792	chr12	132765301	132765500	+	0	NA	Intergenic	Intergenic	-3568	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
37380	chr11	16935871	16936050	+	0	NA	intron (NM_175058, intron 3 of 22)	intron (NM_175058, intron 3 of 22)	-9938	NR_145810	109623465		NR_145810		SNORD147	-	small nucleolar RNA, C/D box 147	snoRNA
74549	chr15	60519101	60519600	+	0	NA	intron (NM_134260, intron 4 of 11)	MIRb|SINE|MIR	40172	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
97585	chr17	44103551	44103850	+	0	NA	intron (NM_001382393, intron 3 of 26)	Charlie4a|DNA|hAT-Charlie	-12212	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
140616	chr2	233423321	233423880	+	0	NA	intron (NM_001377259, intron 1 of 27)	intron (NM_001377259, intron 1 of 27)	4388	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
222625	chr8	141087951	141088250	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-40489	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
190046	chr5	177524421	177524680	+	0	NA	exon (NM_001366499, exon 8 of 11)	exon (NM_001366499, exon 8 of 11)	-7589	NM_016222	51428		NM_016222	ENSG00000183258	DDX41	ABS|MPLPF	DEAD-box helicase 41	protein-coding
180585	chr5	14895271	14895530	+	0	NA	Intergenic	Intergenic	-23622	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
166651	chr3	119937021	119937950	+	0	NA	intron (NM_001146156, intron 3 of 10)	MSTB1|LTR|ERVL-MaLR	147163	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
155927	chr22	39623971	39624150	+	0	NA	intron (NM_001003406, intron 4 of 35)	(TG)n|Simple_repeat|Simple_repeat	53307	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
70488	chr14	102088361	102089380	+	0	NA	intron (NM_001017963, intron 2 of 11)	intron (NM_001017963, intron 2 of 11)	-1826	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
54109	chr12	76126321	76126580	+	0	NA	Intergenic	Intergenic	-41765	NM_001330232	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
86298	chr16	58628751	58630780	+	0	NA	promoter-TSS (NM_001265612)	promoter-TSS (NM_001265612)	61	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
23567	chr1	229430721	229431930	+	0	NA	TTS (NM_001100)	TTS (NM_001100)	2769	NM_001100	58		NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|CMYP2A|CMYP2B|CMYP2C|MPFD|NEM1|NEM2|NEM3|SHPM	actin alpha 1, skeletal muscle	protein-coding
13330	chr1	113785351	113785450	+	0	NA	intron (NM_018364, intron 2 of 6)	Tigger3b|DNA|TcMar-Tigger	-25512	NM_001323042	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
12850	chr1	110070101	110071080	+	0	NA	promoter-TSS (NM_006492)	promoter-TSS (NM_006492)	82	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
185406	chr5	129101271	129101430	+	0	NA	intron (NM_016048, intron 1 of 4)	AluSz6|SINE|Alu	3662	NR_039776	100616175		NR_039776	ENSG00000264563	MIR4633	-	microRNA 4633	ncRNA
141513	chr2	241206971	241208380	+	0	NA	intron (NM_001370694, intron 11 of 24)	intron (NM_001370694, intron 11 of 24)	18998	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
201093	chr6	142821951	142823350	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	122526	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
152789	chr22	21819401	21820150	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSx3|SINE|Alu	47870	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
90521	chr17	1472221	1472730	+	0	NA	intron (NM_001080779, intron 17 of 31)	intron (NM_001080779, intron 17 of 31)	12926	NM_001363855	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
22271	chr1	212700211	212701480	+	0	NA	Intergenic	Intergenic	-1005	NM_018664	55509		NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding
87532	chr16	71903051	71903550	+	0	NA	intron (NM_001270979, intron 1 of 5)	L1MEf|LINE|L1	7769	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
166901	chr3	124750271	124750430	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	17911	NR_036088	100422864		NR_036088	ENSG00000265981	MIR544B	-	microRNA 544b	ncRNA
138094	chr2	202257101	202257300	+	0	NA	Intergenic	AluY|SINE|Alu	-8563	NM_015934	51602		NM_015934	ENSG00000055044	NOP58	HSPC120|NOP5|NOP5/NOP58	NOP58 ribonucleoprotein	protein-coding
148583	chr21	5056521	5056930	+	0	NA	Intergenic	Intergenic	34171	NM_001283050	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
117642	chr19	23719171	23719530	+	0	NA	Intergenic	MER11C|LTR|ERVK	-32138	NM_138330	171392		NM_138330	ENSG00000197372	ZNF675	TBZF|TIZ	zinc finger protein 675	protein-coding
210191	chr7	98873221	98873800	+	0	NA	Intergenic	Intergenic	-3496	NM_001134451	222865		NM_152913	ENSG00000166448	TMEM130	-	transmembrane protein 130	protein-coding
58981	chr13	19953401	19953600	+	0	NA	Intergenic	AluSc|SINE|Alu	-3923	NM_001353164	7750		NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|NECRC|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding
226178	chr9	64752851	64753150	+	0	NA	Intergenic	Intergenic	-7634	NR_121570	101928381		NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
120743	chr19	45395901	45396100	+	0	NA	intron (NM_001142502, intron 6 of 12)	CpG	9069	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
145508	chr20	43969151	43969450	+	0	NA	intron (NM_032883, intron 2 of 9)	intron (NM_032883, intron 2 of 9)	23404	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
178274	chr4	143921351	143921450	+	0	NA	intron (NR_125886, intron 2 of 6)	intron (NR_125886, intron 2 of 6)	9069	NR_125886	101927636		NR_125886	ENSG00000251600	LOC101927636	-	uncharacterized LOC101927636	ncRNA
2332	chr1	9198421	9199230	+	0	NA	Intergenic	CpG	-16487	NR_132742	106614088		NR_132742	ENSG00000228526	MIR34AHG	lnc34a	MIR34A host gene	ncRNA
146597	chr20	50119271	50120130	+	0	NA	3' UTR (NM_001162505, exon 6 of 6)	3' UTR (NM_001162505, exon 6 of 6)	-3743	NM_022442	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
82875	chr16	21542921	21543450	+	0	NA	Intergenic	MIR|SINE|MIR	-22741	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
127827	chr2	44949821	44950630	+	0	NA	Intergenic	Intergenic	-8347	NR_103786	100506108		NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA
51708	chr12	53197271	53197960	+	0	NA	exon (NM_000889, exon 5 of 16)	exon (NM_000889, exon 5 of 16)	9636	NR_104181	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
198092	chr6	90281901	90282250	+	0	NA	intron (NM_021813, intron 1 of 8)	L1ME3D|LINE|L1	14768	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
50006	chr12	42328401	42328600	+	0	NA	intron (NM_001364833, intron 1 of 8)	intron (NM_001364833, intron 1 of 8)	2333	NM_001364827	51535		NM_016488	ENSG00000134283	PPHLN1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
26195	chr10	14550351	14550450	+	0	NA	intron (NM_031453, intron 2 of 4)	intron (NM_031453, intron 2 of 4)	-1763	NM_001320739	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
144109	chr20	33853351	33853980	+	0	NA	3' UTR (NM_176812, exon 5 of 5)	3' UTR (NM_176812, exon 5 of 5)	42317	NM_176812	128866		NM_176812	ENSG00000101421	CHMP4B	C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4	charged multivesicular body protein 4B	protein-coding
126963	chr2	36236901	36237100	+	0	NA	Intergenic	Intergenic	118570	NR_037631	100288911		NR_037631		CRIM1-DT	-	CRIM1 divergent transcript	ncRNA
157583	chr22	45992721	45992980	+	0	NA	Intergenic	Intergenic	-13766	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
173297	chr4	7102901	7104080	+	0	NA	promoter-TSS (NR_027441)	promoter-TSS (NR_027441)	-114	NR_027441	730971		NR_027441		LINC02447	-	long intergenic non-protein coding RNA 2447	ncRNA
70863	chr14	103713321	103713730	+	0	NA	intron (NM_001371232, intron 1 of 9)	intron (NM_001371232, intron 1 of 9)	1926	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
72306	chr15	31202921	31203270	+	0	NA	Intergenic	Intergenic	-12926	NR_135834	102725022		NR_135834		LINC02352	-	long intergenic non-protein coding RNA 2352	ncRNA
69492	chr14	95514001	95515500	+	0	NA	intron (NM_001384283, intron 1 of 9)	intron (NM_001384283, intron 1 of 9)	1900	NM_001384283	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
133077	chr2	112431801	112432000	+	0	NA	intron (NM_005054, intron 1 of 22).3	AluSx|SINE|Alu	1714	NM_005054	84220		NM_005054	ENSG00000015568	RGPD5	BS-63|BS63|HEL161|RGP5	RANBP2 like and GRIP domain containing 5	protein-coding
63772	chr14	21256251	21256900	+	0	NA	intron (NM_001077443, intron 1 of 7)	L2a|LINE|L2	12867	NM_004500	3183		NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|MRD74|SNRPC	heterogeneous nuclear ribonucleoprotein C	protein-coding
203079	chr6	166333451	166334480	+	0	NA	intron (NR_130113, intron 1 of 6)	intron (NR_130113, intron 1 of 6)	8580	NR_130113	113402		NM_145169	ENSG00000198818	SFT2D1	C6orf83|pRGR1	SFT2 domain containing 1	protein-coding
124741	chr2	6878921	6879580	+	0	NA	intron (NM_080657, intron 1 of 5)	intron (NM_080657, intron 1 of 5)	1473	NM_080657	91543		NM_080657	ENSG00000134321	RSAD2	SAND|cig33|cig5|vig1	radical S-adenosyl methionine domain containing 2	protein-coding
26160	chr10	14231351	14231530	+	0	NA	intron (NR_134578, intron 2 of 3)	AluY|SINE|Alu	99484	NM_018027	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
19266	chr1	172703921	172704680	+	0	NA	Intergenic	Intergenic	45197	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
198149	chr6	90583421	90583680	+	0	NA	intron (NM_145333, intron 1 of 14)	intron (NM_145333, intron 1 of 14)	3522	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
38523	chr11	45894721	45895280	+	0	NA	intron (NM_005456, intron 1 of 11)	L2a|LINE|L2	9349	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
26408	chr10	17033001	17034050	+	0	NA	intron (NM_001081, intron 27 of 66)	intron (NM_001081, intron 27 of 66)	96286	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
214193	chr7	148507351	148507850	+	0	NA	Intergenic	L1M5|LINE|L1	-83166	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
35506	chr11	1539921	1540250	+	0	NA	Intergenic	L2a|LINE|L2	32186	NM_004420	1850		NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding
136019	chr2	172440721	172440980	+	0	NA	intron (NM_001365530, intron 1 of 25)	intron (NM_001365530, intron 1 of 25)	13264	NM_001365529	3655		NM_000210	ENSG00000091409	ITGA6	CD49f|ITGA6A|ITGA6B|JEB6|VLA-6	integrin subunit alpha 6	protein-coding
206017	chr7	26305551	26305850	+	0	NA	intron (NM_001318199, intron 1 of 6)	intron (NM_001318199, intron 1 of 6)	12669	NM_001318199	29887		NM_013322	ENSG00000086300	SNX10	OPTB8	sorting nexin 10	protein-coding
205352	chr7	13263001	13263300	+	0	NA	Intergenic	Intergenic	575517	NM_005738	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
51342	chr12	51390801	51392100	+	0	NA	promoter-TSS (NM_007210)	promoter-TSS (NM_007210)	-44	NM_007210	11226		NM_007210	ENSG00000139629	GALNT6	GALNAC-T6|GalNAcT6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding
129917	chr2	73290071	73290530	+	0	NA	TTS (NM_001965)	TTS (NM_001965)	3248	NM_001965	1961		NM_001965	ENSG00000135625	EGR4	AT133|NGFI-C|NGFIC|PAT133	early growth response 4	protein-coding
39934	chr11	62537071	62537630	+	0	NA	intron (NM_024060, intron 1 of 5)	AluJb|SINE|Alu	8314	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
8354	chr1	40243351	40243450	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4537	NM_001008740	127391		NM_001008740	ENSG00000188800	TMCO2	dJ39G22.2	transmembrane and coiled-coil domains 2	protein-coding
77765	chr15	85791701	85792230	+	0	NA	intron (NM_022480, intron 1 of 2)	intron (NM_022480, intron 1 of 2)	2960	NM_022480	64410		NM_022480	ENSG00000183655	KLHL25	ENC-2|ENC2	kelch like family member 25	protein-coding
190379	chr5	179758651	179759150	+	0	NA	intron (NM_014757, intron 1 of 4)	AluSz|SINE|Alu	26078	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
166162	chr3	111607271	111607600	+	0	NA	TTS (NM_001318889)	TTS (NM_001318889)	-12089	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
114943	chr19	13980401	13981100	+	0	NA	intron (NM_002918, intron 5 of 20)	intron (NM_002918, intron 5 of 20)	25570	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
18693	chr1	167429101	167429450	+	0	NA	Intergenic	Intergenic	89254	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
233274	chr9	137301701	137302930	+	0	NA	promoter-TSS (NM_001004354)	promoter-TSS (NM_001004354)	-44	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
54906	chr12	96061951	96062900	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-18905	NM_001256643	4048		NM_000895	ENSG00000111144	LTA4H	-	leukotriene A4 hydrolase	protein-coding
62797	chr13	109610501	109610750	+	0	NA	Intergenic	MIR|SINE|MIR	-117649	NR_103846	101409253		NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
217895	chr8	37882971	37883730	+	0	NA	intron (NM_025151, intron 1 of 4)	AluSx|SINE|Alu	16147	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
44777	chr11	112485371	112485530	+	0	NA	intron (NR_120560, intron 1 of 2)	intron (NR_120560, intron 1 of 2)	1105	NR_120560	101928823		NR_120559	ENSG00000254968	LINC02763	-	long intergenic non-protein coding RNA 2763	ncRNA
186838	chr5	139438851	139440500	+	0	NA	promoter-TSS (NM_152686)	promoter-TSS (NM_152686)	-150	NM_152686	202052		NM_152686	ENSG00000170464	DNAJC18	-	DnaJ heat shock protein family (Hsp40) member C18	protein-coding
98470	chr17	47163201	47163650	+	0	NA	intron (NR_148340, intron 2 of 16)	AluJo|SINE|Alu	25870	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
106214	chr18	11793821	11794080	+	0	NA	intron (NM_182978, intron 4 of 11)	L1MB5|LINE|L1	41865	NM_001369387	2774		NM_002071	ENSG00000141404	GNAL	DYT25|HG1O	G protein subunit alpha L	protein-coding
174645	chr4	40629721	40630580	+	0	NA	promoter-TSS (NM_001098634)	promoter-TSS (NM_001098634)	-286	NM_001098634	54502		NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
116490	chr19	18118901	18121600	+	0	NA	intron (NM_015016, intron 2 of 26)	intron (NM_015016, intron 2 of 26)	-21434	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
156410	chr22	41189201	41189600	+	0	NA	intron (NR_110514, intron 2 of 2)	AluSx|SINE|Alu	8101	NR_110514	101927279		NR_110514		EP300-AS1	-	EP300 antisense RNA 1	ncRNA
103972	chr17	79991121	79992530	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	-40972	NM_001271845	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
209063	chr7	74775101	74775300	+	0	NA	intron (NM_000265, intron 1 of 10)	AluJb|SINE|Alu	1238	NM_000265	653361		NM_000265	ENSG00000158517	NCF1	CGD1|NCF1A|NOXO2|SH3PXD1A|p47phox	neutrophil cytosolic factor 1	protein-coding
146411	chr20	49483821	49484500	+	0	NA	Intergenic	CpG	-1492	NM_004975	3745		NM_004975	ENSG00000158445	KCNB1	DEE26|DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
77790	chr15	86743301	86743630	+	0	NA	intron (NM_152336, intron 23 of 24)	intron (NM_152336, intron 23 of 24)	-189415	NR_135682	105370954		NR_135682	ENSG00000259636	LOC105370954	-	uncharacterized LOC105370954	ncRNA
116761	chr19	18489051	18490000	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	32545	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
236912	chrX	87821651	87821750	+	0	NA	Intergenic	L1HS|LINE|L1	303898	NM_019117	56062		NM_019117	ENSG00000102271	KLHL4	DKELCHL|KHL4	kelch like family member 4	protein-coding
171026	chr3	195117971	195118130	+	0	NA	intron (NM_001308069, intron 3 of 3)	L3|LINE|CR1	16530	NR_036089	100422926		NR_036089	ENSG00000265333	MIR3137	-	microRNA 3137	ncRNA
160456	chr3	30263421	30263680	+	0	NA	Intergenic	L1PBa|LINE|L1	-255318	NR_147054	101928015		NR_147054	ENSG00000227260	LINC01985	-	long intergenic non-protein coding RNA 1985	ncRNA
194877	chr6	34658871	34659030	+	0	NA	intron (NM_022758, intron 1 of 3)	MIRb|SINE|MIR	-37204	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
236283	chrX	66061601	66062100	+	0	NA	Intergenic	L1PBa1|LINE|L1	-21725	NM_001184830	11326		NM_007268	ENSG00000155659	VSIG4	CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding
27830	chr10	38354251	38354850	+	0	NA	Intergenic	MER51C|LTR|ERV1	-1830	NR_003086	158160		NM_182829	ENSG00000290439	HSD17B7P2	HSD17B7|Hsd17b_2|bA291L22.1	hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2	pseudo
90439	chr17	1360921	1361450	+	0	NA	exon (NM_006761, exon 4 of 6)	exon (NM_006761, exon 4 of 6)	39037	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
176854	chr4	102607651	102608350	+	0	NA	intron (NM_001382625, intron 20 of 24)	intron (NM_001382625, intron 20 of 24)	-105514	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
206230	chr7	28957451	28957750	+	0	NA	exon (NM_014817, exon 1 of 1)	exon (NM_014817, exon 1 of 1)	730	NM_014817	9865		NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
192840	chr6	27144151	27144450	+	0	NA	intron (NM_080593, intron 1 of 1)	AluSx1|SINE|Alu	2555	NM_001312653	85236		NM_080593	ENSG00000197903	H2BC12	H2B/S|H2BFAiii|H2BFT|H2BK|HIST1H2BK	H2B clustered histone 12	protein-coding
24267	chr1	236407051	236407550	+	0	NA	intron (NM_080738, intron 1 of 5)	intron (NM_080738, intron 1 of 5)	11887	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
192375	chr6	24710551	24711500	+	0	NA	intron (NM_030939, intron 3 of 4)	intron (NM_030939, intron 3 of 4)	8129	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
226362	chr9	70038271	70038500	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-5196	NM_001347990	256691		NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
78688	chr15	95875321	95875580	+	0	NA	Intergenic	Intergenic	252391	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
190073	chr5	177671251	177673430	+	0	NA	promoter-TSS (NR_026921)	promoter-TSS (NR_026921)	-63	NR_026921	202181		NR_026921		SIMC1P1	-	SIMC1 pseudogene 1	pseudo
42428	chr11	69122171	69122330	+	0	NA	Intergenic	MIRb|SINE|MIR	-33685	NR_161183	107984345		NM_001369201	ENSG00000284713	SMIM38	-	small integral membrane protein 38	protein-coding
238718	chrX	154145471	154145830	+	0	NA	intron (NM_020061, intron 1 of 5)	intron (NM_020061, intron 1 of 5)	1407	NM_020061	5956		NM_020061	ENSG00000102076	OPN1LW	CBBM|CBP|COD5|RCP|ROP	opsin 1, long wave sensitive	protein-coding
67930	chr14	74711221	74711780	+	0	NA	intron (NM_001039479, intron 1 of 19)	AluSx|SINE|Alu	1580	NM_001039479	9870		NM_014821	ENSG00000119682	AREL1	FIEL1|KIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding
185394	chr5	128101871	128102030	+	0	NA	intron (NR_046207, intron 1 of 26)	intron (NR_046207, intron 1 of 26)	18184	NR_046207	6558		NM_001046	ENSG00000064651	SLC12A2	BSC|BSC-2|BSC2|CCC1|KILQS|NKCC1|PPP1R141	solute carrier family 12 member 2	protein-coding
151335	chr21	45617151	45617880	+	0	NA	Intergenic	Intergenic	23861	NR_146912	105372840		NR_146912	ENSG00000233922	LINC01694	-	long intergenic non-protein coding RNA 1694	ncRNA
45282	chr11	118043851	118044150	+	0	NA	intron (NM_001354434, intron 2 of 5)	L1MB7|LINE|L1	-33012	NM_001290094	56649		NM_019894	ENSG00000137648	TMPRSS4	CAP2|CAPH2|MT-SP2|TMPRSS3	transmembrane serine protease 4	protein-coding
120776	chr19	45434921	45435180	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluSp|SINE|Alu	-1604	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
83713	chr16	28500271	28500430	+	0	NA	intron (NM_145659, intron 4 of 4)	AluSz|SINE|Alu	5707	NM_018690	55911		NM_018690	ENSG00000184730	APOBR	APOB100R|APOB48R	apolipoprotein B receptor	protein-coding
132508	chr2	106087571	106087930	+	0	NA	Intergenic	L1MDa|LINE|L1	22062	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
72937	chr15	40438211	40438750	+	0	NA	Intergenic	Intergenic	-1277	NM_001301132	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
91317	chr17	4362671	4363100	+	0	NA	intron (NM_003342, intron 1 of 5)	AluSq|SINE|Alu	3789	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
187684	chr5	143324021	143324280	+	0	NA	intron (NR_157096, intron 1 of 7)	THE1A-int|LTR|ERVL-MaLR	79133	NM_001364182	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
105704	chr18	2685851	2685950	+	0	NA	intron (NM_015295, intron 5 of 47)	L1MB4|LINE|L1	30174	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
231788	chr9	132347221	132347880	+	0	NA	intron (NM_001351527, intron 3 of 25)	AluSg|SINE|Alu	7306	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
189413	chr5	172788971	172789730	+	0	NA	Intergenic	Intergenic	-18155	NM_004417	1843		NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding
31648	chr10	97399671	97400500	+	0	NA	intron (NM_015179, intron 2 of 33)	intron (NM_015179, intron 2 of 33)	1255	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
1215	chr1	2264551	2265130	+	0	NA	intron (NM_003036, intron 1 of 6)	AluSx1|SINE|Alu	36521	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
95450	chr17	36148971	36149430	+	0	NA	Intergenic	Intergenic	27378	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
23142	chr1	226713501	226715380	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	24735	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
139367	chr2	221520121	221520980	+	0	NA	intron (NM_004438, intron 3 of 17)	GA-rich|Low_complexity|Low_complexity	51754	NM_001304537	2043		NM_004438	ENSG00000116106	EPHA4	EK8|HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
209369	chr7	76294501	76295130	+	0	NA	Intergenic	Intergenic	-7858	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
5027	chr1	24505151	24505650	+	0	NA	intron (NM_001251983, intron 1 of 3)	AluJb|SINE|Alu	-2194	NM_001251978	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
127545	chr2	42338371	42338900	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	21403	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
130926	chr2	87485851	87487180	+	0	NA	intron (NR_146461, intron 2 of 2)	AluJb|SINE|Alu	16565	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
214342	chr7	149474621	149475080	+	0	NA	exon (NM_001363517, exon 7 of 7)	exon (NM_001363517, exon 7 of 7)	-13788	NM_015694	27153		NM_015694	ENSG00000196453	ZNF777	-	zinc finger protein 777	protein-coding
173122	chr4	6576371	6576930	+	0	NA	exon (NM_001292038, exon 2 of 19)	exon (NM_001292038, exon 2 of 19)	1461	NM_001292038	23324		NM_015274	ENSG00000013288	MAN2B2	EpMAN	mannosidase alpha class 2B member 2	protein-coding
206384	chr7	30731471	30731830	+	0	NA	Intergenic	Intergenic	-20485	NM_006774	11185		NM_006774	ENSG00000241644	INMT	TEMT	indolethylamine N-methyltransferase	protein-coding
29423	chr10	70265171	70265430	+	0	NA	intron (NM_022146, intron 2 of 3)	intron (NM_022146, intron 2 of 3)	18704	NM_022146	64106		NM_022146	ENSG00000148734	NPFFR1	GPR147|NPFF1|NPFF1R1|OT7T022	neuropeptide FF receptor 1	protein-coding
86847	chr16	67928421	67929280	+	0	NA	TTS (NM_001907)	TTS (NM_001907)	3012	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
17120	chr1	156165071	156165500	+	0	NA	intron (NM_001370567, intron 9 of 13)	HAL1|LINE|L1	10737	NM_001370567	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
101618	chr17	68200501	68201850	+	0	NA	TTS (NR_027283)	TTS (NR_027283)	2515	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
68366	chr14	77740401	77740800	+	0	NA	intron (NM_001318844, intron 3 of 12)	intron (NM_001318844, intron 3 of 12)	-20168	NR_161324	283579		NM_174943	ENSG00000197734	C14orf178	-	chromosome 14 open reading frame 178	ncRNA
108415	chr18	69939821	69940330	+	0	NA	intron (NM_001303619, intron 1 of 4)	THE1C|LTR|ERVL-MaLR	7798	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
105953	chr18	3794671	3794830	+	0	NA	intron (NM_001242763, intron 2 of 10)	intron (NM_001242763, intron 2 of 10)	50608	NM_001242765	9229		NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding
29375	chr10	69914671	69915030	+	0	NA	intron (NM_001368884, intron 17 of 36)	intron (NM_001368884, intron 17 of 36)	112944	NM_080805	1305		NM_005203	ENSG00000197467	COL13A1	CMS19|COLXIIIA1	collagen type XIII alpha 1 chain	protein-coding
72455	chr15	32347121	32347600	+	0	NA	intron (NR_038253, intron 2 of 7)	intron (NR_038253, intron 2 of 7)	-4683	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
46411	chr11	126354771	126356450	+	0	NA	promoter-TSS (NM_001348399)	promoter-TSS (NM_001348399)	-23	NR_033839	399972		NR_033839		GSEC	DCPS-AS1|ST3GAL4-AS1	G-quadruplex forming sequence containing lncRNA	ncRNA
54337	chr12	89671151	89671450	+	0	NA	intron (NM_001366524, intron 1 of 21)	intron (NM_001366524, intron 1 of 21)	37538	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
121574	chr19	47271271	47272030	+	0	NA	exon (NM_015603, exon 12 of 12)	exon (NM_015603, exon 12 of 12)	-2773	NR_037675	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
108688	chr18	77032121	77032580	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-15295	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
136313	chr2	174989821	174990460	+	0	NA	intron (NR_038133, intron 1 of 11)	intron (NR_038133, intron 1 of 11)	14940	NM_001371514	1123		NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
101485	chr17	67563621	67563880	+	0	NA	intron (NM_181671, intron 4 of 9)	intron (NM_181671, intron 4 of 9)	-92165	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
73249	chr15	41804871	41805230	+	0	NA	intron (NM_014994, intron 3 of 30)	intron (NM_014994, intron 3 of 30)	-23035	NM_001198588	8681		NM_005090	ENSG00000168970	JMJD7-PLA2G4B	HsT16992|cPLA2-beta	JMJD7-PLA2G4B readthrough	protein-coding
186467	chr5	138023001	138023200	+	0	NA	intron (NM_016603, intron 1 of 22)	AluJo|SINE|Alu	-9674	NR_037900	100130172		NR_037900		FAM13B-AS1	-	FAM13B antisense RNA 1	ncRNA
203373	chr6	170457971	170458780	+	0	NA	Intergenic	Intergenic	94932	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
105603	chr18	667301	667500	+	0	NA	intron (NM_001354867, intron 3 of 5)	(GATGGT)n|Simple_repeat|Simple_repeat	-9109	NM_001012716	494514		NM_001012716		TYMSOS	C18orf56	TYMS opposite strand RNA	ncRNA
93146	chr17	17748021	17748500	+	0	NA	intron (NM_030665, intron 2 of 5)	L2c|LINE|L2	18042	NR_130894	100861516		NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA
187783	chr5	146186221	146186930	+	0	NA	Intergenic	AluY|SINE|Alu	-3788	NM_016460	51520		NM_016460	ENSG00000133706	LARS1	HSPC192|ILFS1|LARS|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|cLRS|hr025Cl	leucyl-tRNA synthetase 1	protein-coding
212522	chr7	128829471	128829630	+	0	NA	promoter-TSS (NM_001127487)	promoter-TSS (NM_001127487)	-856	NM_001458	2318		NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|ARVC15|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding
128020	chr2	47170621	47170950	+	0	NA	5' UTR (NM_001305626, exon 1 of 5)	5' UTR (NM_001305626, exon 1 of 5)	3422	NM_001305626	805		NM_001743	ENSG00000143933	CALM2	CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding
175882	chr4	80061021	80061480	+	0	NA	intron (NM_001145794, intron 3 of 15)	MLT1G|LTR|ERVL-MaLR	11979	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
5112	chr1	24869501	24869700	+	0	NA	Intergenic	AluSz6|SINE|Alu	49816	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
184287	chr5	96806371	96806680	+	0	NA	intron (NM_001198541, intron 1 of 18)	MIRb|SINE|MIR	1420	NM_001040458	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
32624	chr10	103667801	103668000	+	0	NA	intron (NM_001365079, intron 1 of 8)	intron (NM_001365079, intron 1 of 8)	10315	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
27728	chr10	34994551	34994880	+	0	NA	Intergenic	Intergenic	79568	NM_001198778	8453		NM_003591	ENSG00000108094	CUL2	-	cullin 2	protein-coding
166934	chr3	125125671	125126150	+	0	NA	intron (NM_024628, intron 6 of 13)	intron (NM_024628, intron 6 of 13)	25642	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA
138394	chr2	204260171	204260400	+	0	NA	Intergenic	Intergenic	-285190	NM_205863	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
123594	chr19	54473151	54474080	+	0	NA	promoter-TSS (NM_145057).4	promoter-TSS (NM_145057).4	-319	NM_145057	148170		NM_145057	ENSG00000167617	CDC42EP5	Borg3|CEP5	CDC42 effector protein 5	protein-coding
22519	chr1	221827871	221828100	+	0	NA	intron (NR_125989, intron 3 of 3)	MER4CL34|LTR|ERV1	12681	NR_125989	101929771		NR_125989		LINC01655	-	long intergenic non-protein coding RNA 1655	ncRNA
139605	chr2	225019121	225019450	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	-8745	NR_039641	100616207		NR_039641	ENSG00000263828	MIR4439	-	microRNA 4439	ncRNA
36945	chr11	10933721	10934850	+	0	NA	Intergenic	Intergenic	76068	NR_034137	729013		NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA
122745	chr19	50097851	50098250	+	0	NA	promoter-TSS (NR_024214).3	promoter-TSS (NR_024214).3	-104	NR_024242	100191063		NR_024242		SNAR-A14	-	small NF90 (ILF3) associated RNA A14	snRNA
201393	chr6	145814051	145816000	+	0	NA	promoter-TSS (NM_032145)	promoter-TSS (NM_032145)	149	NR_038244	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
87502	chr16	71816421	71817150	+	0	NA	Intergenic	Intergenic	-7951	NM_001128	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
230974	chr9	129463871	129464300	+	0	NA	Intergenic	L2b|LINE|L2	-24575	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
115189	chr19	14448421	14449000	+	0	NA	intron (NM_002741, intron 4 of 21)	intron (NM_002741, intron 4 of 21)	8433	NM_213560	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
207405	chr7	44255101	44255300	+	0	NA	intron (NM_172080, intron 4 of 19)	intron (NM_172080, intron 4 of 19)	54222	NM_006555	10652		NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog	protein-coding
41444	chr11	66085101	66085450	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	15003	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
98063	chr17	45468351	45468450	+	0	NA	exon (NM_001352825, exon 5 of 7).3	exon (NM_001352825, exon 5 of 7).3	7035	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
74362	chr15	58725901	58726300	+	0	NA	intron (NM_001320570, intron 1 of 14)	L1MEc|LINE|L1	23607	NM_001110	102		NM_001110	ENSG00000137845	ADAM10	AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz	ADAM metallopeptidase domain 10	protein-coding
220623	chr8	100932971	100933480	+	0	NA	intron (NM_001135702, intron 2 of 5)	AluSg4|SINE|Alu	17346	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
113829	chr19	10617301	10617500	+	0	NA	intron (NM_001145056, intron 1 of 21)	intron (NM_001145056, intron 1 of 21)	-8153	NM_001363611	57153		NM_020428	ENSG00000129353	SLC44A2	CTL2|PP1292	solute carrier family 44 member 2 (CTL2 blood group)	protein-coding
4781	chr1	23554371	23555550	+	0	NA	Intergenic	CpG	4541	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
106800	chr18	23934221	23934500	+	0	NA	intron (NM_198129, intron 67 of 74)	MER5B|DNA|hAT-Charlie	-58527	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
182583	chr5	65969921	65970380	+	0	NA	intron (NM_001253697, intron 1 of 25)	intron (NM_001253697, intron 1 of 25)	-24577	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
54139	chr12	76542251	76542800	+	0	NA	intron (NM_001319652, intron 1 of 25)	MER5A|DNA|hAT-Charlie	17246	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
217722	chr8	30384671	30385780	+	0	NA	non-coding (NR_046205, exon 1 of 3)	non-coding (NR_046205, exon 1 of 3)	176	NR_046205	100128750		NR_046205	ENSG00000254109	RBPMS-AS1	TP53LC06	RBPMS antisense RNA 1	ncRNA
13300	chr1	113261621	113261700	+	0	NA	Intergenic	AluY|SINE|Alu	-55407	NR_038846	643441		NR_038846		LOC643441	-	uncharacterized LOC643441	ncRNA
100272	chr17	59620501	59621350	+	0	NA	intron (NM_004859, intron 1 of 31)	intron (NM_004859, intron 1 of 31)	1030	NM_004859	1213		NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56	clathrin heavy chain	protein-coding
190346	chr5	179676771	179676930	+	0	NA	Intergenic	AluSx|SINE|Alu	4184	NM_001164444	646019		NM_001164444	ENSG00000204659	CBY3	-	chibby family member 3	protein-coding
215566	chr7	158816101	158816600	+	0	NA	intron (NM_020728, intron 1 of 21)	intron (NM_020728, intron 1 of 21)	13159	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
236698	chrX	77782551	77783230	+	0	NA	intron (NM_138270, intron 1 of 33)	L1M1|LINE|L1	3326	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
139955	chr2	230866801	230867680	+	0	NA	intron (NM_001012514, intron 1 of 4)	intron (NM_001012514, intron 1 of 4)	2290	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
46150	chr11	123053151	123053530	+	0	NA	Intergenic	Intergenic	4816	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
221526	chr8	124658671	124658830	+	0	NA	intron (NM_001363300, intron 3 of 12)	MSTA|LTR|ERVL-MaLR	69723	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
79974	chr16	1787271	1787700	+	0	NA	intron (NM_012225, intron 3 of 6)	intron (NM_012225, intron 3 of 6)	4525	NR_104318	10101		NM_012225	ENSG00000095906	NUBP2	CFD1|CIAO6|NBP 2|NUBP1	NUBP iron-sulfur cluster assembly factor 2, cytosolic	protein-coding
85039	chr16	31859401	31859830	+	0	NA	Intergenic	LTR13|LTR|ERVK	-14192	NM_003414	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
148948	chr21	10273971	10274190	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-139417	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
81031	chr16	4270551	4272400	+	0	NA	intron (NM_003223, intron 1 of 6)	CpG	1548	NM_003223	7023		NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding
71216	chr14	105111421	105112050	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	17588	NR_110546	102723354		NR_110546		LINC02298	-	long intergenic non-protein coding RNA 2298	ncRNA
14884	chr1	146933521	146934030	+	0	NA	Intergenic	Intergenic	-4770	NM_001278141	149013		NM_001278141	ENSG00000268043	NBPF12	COAS1|KIAA1245	NBPF member 12	protein-coding
2309	chr1	9052251	9052550	+	0	NA	intron (NM_001328620, intron 3 of 11)	L1MC1|LINE|L1	17235	NM_001328620	6518		NM_003039	ENSG00000142583	SLC2A5	GLUT-5|GLUT5	solute carrier family 2 member 5	protein-coding
203046	chr6	165850401	165850730	+	0	NA	Intergenic	Intergenic	-136986	NR_027284	441177		NM_001013720	ENSG00000281832	LINC00602	-	long intergenic non-protein coding RNA 602	ncRNA
194658	chr6	33626371	33626750	+	0	NA	intron (NM_002224, intron 1 of 57)	intron (NM_002224, intron 1 of 57)	5238	NM_002224	3710		NM_002224	ENSG00000096433	ITPR3	CMT1J|IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding
198176	chr6	96156951	96157300	+	0	NA	intron (NM_006581, intron 2 of 2)	intron (NM_006581, intron 2 of 2)	141151	NM_006581	10690		NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding
52962	chr12	57467601	57468300	+	0	NA	intron (NM_001160045, intron 7 of 9)	intron (NM_001160045, intron 7 of 9)	7799	NM_001167609	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
95111	chr17	34961051	34962200	+	0	NA	promoter-TSS (NM_001193530)	promoter-TSS (NM_001193530)	85	NM_052857	91603		NM_052857	ENSG00000198783	ZNF830	CCDC16|OMCG1	zinc finger protein 830	protein-coding
91119	chr17	3685571	3686130	+	0	NA	intron (NM_002561, intron 9 of 11)	intron (NM_002561, intron 9 of 11)	10305	NM_001204519	5026		NM_002561	ENSG00000083454	P2RX5	LRH-1|P2X5|P2X5R	purinergic receptor P2X 5	protein-coding
31426	chr10	95755301	95755780	+	0	NA	promoter-TSS (NM_001164183)	promoter-TSS (NM_001164183)	-112	NM_001312654	953		NM_001776	ENSG00000138185	ENTPD1	ATP-DPH|ATPDase|CD39|NTPDase-1|SPG64	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
5075	chr1	24677251	24677550	+	0	NA	Intergenic	AluJb|SINE|Alu	33821	NM_001366598	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
27183	chr10	28552501	28552700	+	0	NA	intron (NM_100486, intron 3 of 12)	intron (NM_100486, intron 3 of 12)	19482	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
19480	chr1	175003001	175003650	+	0	NA	intron (NM_014412, intron 1 of 5)	AluSp|SINE|Alu	3378	NM_014412	27101		NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding
149272	chr21	26806951	26807250	+	0	NA	Intergenic	Intergenic	38309	NM_006988	9510		NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding
125848	chr2	24453471	24454030	+	0	NA	Intergenic	Intergenic	-37504	NM_147223	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
139861	chr2	230599921	230601150	+	0	NA	Intergenic	L1MB4|LINE|L1	99994	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
170997	chr3	194674901	194675750	+	0	NA	Intergenic	Intergenic	-3134	NM_018385	55341		NM_018385	ENSG00000041802	LSG1	-	large 60S subunit nuclear export GTPase 1	protein-coding
12594	chr1	109035171	109035850	+	0	NA	intron (NM_001142550, intron 1 of 14)	AluSx1|SINE|Alu	6592	NM_001142551	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
194908	chr6	34755401	34755800	+	0	NA	Intergenic	Intergenic	-1494	NR_029472	6631		NM_003093	ENSG00000124562	SNRPC	U1C|Yhc1	small nuclear ribonucleoprotein polypeptide C	protein-coding
42646	chr11	72432001	72432200	+	0	NA	intron (NM_001258394, intron 1 of 17)	intron (NM_001258394, intron 1 of 17)	2431	NM_030813	81570		NM_030813	ENSG00000162129	CLPB	ANKCLB|ANKCLP|HSP78|MEGCANN|MGCA7|MGCA7A|SCN9|SKD3	ClpB family mitochondrial disaggregase	protein-coding
137708	chr2	197505271	197505800	+	0	NA	intron (NM_001202485, intron 2 of 8)	AluSx|SINE|Alu	5156	NM_001202485	100529241		NM_001202485	ENSG00000270757	HSPE1-MOB4	HSPE1-PHOCN	HSPE1-MOB4 readthrough	protein-coding
218433	chr8	47825301	47826080	+	0	NA	intron (NM_006904, intron 63 of 85)	intron (NM_006904, intron 63 of 85)	-87526	NM_005195	1052		NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT enhancer binding protein delta	protein-coding
65699	chr14	52742301	52743400	+	0	NA	intron (NM_001130701, intron 2 of 11)	AluSq2|SINE|Alu	12684	NM_145251	6815		NM_145251	ENSG00000198252	STYX	-	serine/threonine/tyrosine interacting protein	protein-coding
61691	chr13	74051101	74051650	+	0	NA	intron (NM_007249, intron 1 of 7)	(AC)n|Simple_repeat|Simple_repeat	82554	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
95818	chr17	38749971	38750130	+	0	NA	non-coding (NR_149004, exon 1 of 1)	non-coding (NR_149004, exon 1 of 1)	1016	NR_149004	100287808		NR_149004	ENSG00000277182	LOC100287808	-	uncharacterized LOC100287808	ncRNA
172641	chr4	2541751	2542050	+	0	NA	intron (NM_001366318, intron 1 of 20)	AluSz|SINE|Alu	5253	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
220724	chr8	102074421	102074750	+	0	NA	intron (NM_001040625, intron 1 of 6)	intron (NM_001040625, intron 1 of 6)	49749	NM_001040626	83988		NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
80050	chr16	1968271	1968430	+	0	NA	intron (NM_001348711, intron 3 of 3)	intron (NM_001348711, intron 3 of 3)	1494	NM_174903	146310		NM_174903	ENSG00000179580	RNF151	-	ring finger protein 151	protein-coding
213844	chr7	141754901	141755180	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-9057	NM_016943	50831		NM_016943	ENSG00000127362	TAS2R3	T2R3	taste 2 receptor member 3	protein-coding
44257	chr11	101919621	101919900	+	0	NA	intron (NM_020802, intron 1 of 10)	intron (NM_020802, intron 1 of 10)	-3238	NM_178127	253935		NM_178127	ENSG00000187151	ANGPTL5	-	angiopoietin like 5	protein-coding
133226	chr2	113186871	113187030	+	0	NA	intron (NM_012455, intron 5 of 16)	intron (NM_012455, intron 5 of 16)	12979	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
234463	chrX	17740521	17740780	+	0	NA	intron (NM_001037536, intron 1 of 5)	intron (NM_001037536, intron 1 of 5)	3157	NM_001037540	6322		NM_006746	ENSG00000047634	SCML1	-	Scm polycomb group protein like 1	protein-coding
17731	chr1	158952151	158952250	+	0	NA	intron (NM_198930, intron 7 of 7)	intron (NM_198930, intron 7 of 7)	20648	NM_198929	149628		NM_152501	ENSG00000163564	PYHIN1	IFIX	pyrin and HIN domain family member 1	protein-coding
48782	chr12	11726951	11727650	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	77626	NM_001987	2120		NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant transcription factor 6	protein-coding
235065	chrX	40157471	40157630	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	19727	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
101992	chr17	74763001	74763500	+	0	NA	intron (NM_004252, intron 2 of 5)	intron (NM_004252, intron 2 of 5)	13095	NM_001305081	26151		NM_015654	ENSG00000109065	NAT9	EBSP, hNATL	N-acetyltransferase 9 (putative)	protein-coding
169425	chr3	161274621	161275000	+	0	NA	Intergenic	Intergenic	53499	NM_015938	51068		NM_015938	ENSG00000169251	NMD3	CGI-07	NMD3 ribosome export adaptor	protein-coding
152684	chr22	21619151	21619850	+	0	NA	intron (NR_028436, intron 4 of 4)	intron (NR_028436, intron 4 of 4)	10522	NR_163922	150223		NM_001017964	ENSG00000161179	YDJC	-	YdjC chitooligosaccharide deacetylase homolog	protein-coding
15145	chr1	148869751	148869850	+	0	NA	intron (NM_001350522, intron 3 of 45)	(A)n|Simple_repeat|Simple_repeat	-17573	NM_001195260	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
147152	chr20	56414721	56415600	+	0	NA	intron (NM_001164114, intron 1 of 5)	MER58C|DNA|hAT-Charlie	2900	NM_020356	57091		NM_020356	ENSG00000087589	CASS4	C20orf32|CAS4|HEFL|HEPL	Cas scaffold protein family member 4	protein-coding
231294	chr9	130039421	130040150	+	0	NA	intron (NM_001363755, intron 1 of 15)	intron (NM_001363755, intron 1 of 15)	3404	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
40545	chr11	64314801	64315180	+	0	NA	intron (NM_004451, intron 5 of 6)	intron (NM_004451, intron 5 of 6)	2569	NM_001286082	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
194371	chr6	32977471	32977880	+	0	NA	intron (NM_001199455, intron 7 of 12).4	intron (NM_001199455, intron 7 of 12).4	4591	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
6965	chr1	31770001	31770530	+	0	NA	Intergenic	MIR|SINE|MIR	-5925	NM_001364857	576		NM_001294335	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding
108293	chr18	63317941	63318750	+	0	NA	exon (NM_000633, exon 2 of 3)	exon (NM_000633, exon 2 of 3)	1424	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
228459	chr9	99845821	99846080	+	0	NA	intron (NM_173200, intron 7 of 8)	intron (NM_173200, intron 7 of 8)	24065	NM_173199	8013		NM_006981	ENSG00000119508	NR4A3	CHN|CSMF|MINOR|NOR1	nuclear receptor subfamily 4 group A member 3	protein-coding
146742	chr20	50800021	50800280	+	0	NA	intron (NM_198799, intron 1 of 4)	L2b|LINE|L2	5089	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
109101	chr18	79981701	79982100	+	0	NA	intron (NM_001305564, intron 1 of 2)	MIRb|SINE|MIR	6663	NR_131175	10907		NM_006701	ENSG00000141759	TXNL4A	BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD	thioredoxin like 4A	protein-coding
33992	chr10	124676451	124677050	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-27278	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
158805	chr3	9703601	9703900	+	0	NA	promoter-TSS (NM_001308388)	promoter-TSS (NM_001308388)	-83	NM_001308388	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
33823	chr10	123773311	123773680	+	0	NA	intron (NM_198148, intron 7 of 13)	intron (NM_198148, intron 7 of 13)	107140	NM_153442	2849		NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding
16539	chr1	154953551	154953650	+	0	NA	intron (NM_020524, intron 2 of 10)	intron (NM_020524, intron 2 of 10)	2499	NM_020524	57326		NM_020524	ENSG00000163346	PBXIP1	HPIP	PBX homeobox interacting protein 1	protein-coding
152783	chr22	21813621	21814080	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSq|SINE|Alu	53795	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
131097	chr2	89830771	89831750	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	-193353	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
84950	chr16	31361371	31361530	+	0	NA	intron (NM_000887, intron 9 of 29)	intron (NM_000887, intron 9 of 29)	6274	NM_000887	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
201099	chr6	142845021	142847130	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	99101	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
158661	chr3	5039101	5039300	+	0	NA	Intergenic	AluSz|SINE|Alu	-59239	NR_125915	100507582		NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA
230038	chr9	127384951	127385250	+	0	NA	exon (NM_032293, exon 24 of 28)	exon (NM_032293, exon 24 of 28)	-12038	NM_001271711	29988		NM_014580	ENSG00000136856	SLC2A8	GLUT8|GLUTX1	solute carrier family 2 member 8	protein-coding
150100	chr21	37439251	37439830	+	0	NA	intron (NM_101395, intron 3 of 12)	MER1B|DNA|hAT-Charlie	19241	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
8884	chr1	43672401	43672600	+	0	NA	intron (NM_014663, intron 11 of 21)	AluY|SINE|Alu	22351	NM_014663	9682		NM_014663	ENSG00000066135	KDM4A	JHDM3A|JMJD2|JMJD2A|TDRD14A	lysine demethylase 4A	protein-coding
92207	chr17	7855001	7855600	+	0	NA	TTS (NM_001080424)	TTS (NM_001080424)	234	NM_001319941	92162		NM_203411	ENSG00000167874	TMEM88	-	transmembrane protein 88	protein-coding
32977	chr10	110503981	110505130	+	0	NA	intron (NM_004419, intron 2 of 3)	intron (NM_004419, intron 2 of 3)	6648	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
189295	chr5	172116471	172116850	+	0	NA	intron (NM_005990, intron 4 of 18)	AluSx1|SINE|Alu	71564	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
171277	chr3	195889921	195890380	+	0	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	2594	NM_001382275	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
148589	chr21	5102971	5103130	+	0	NA	TTS (NR_146631)	TTS (NR_146631)	990	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
199551	chr6	118861721	118861980	+	0	NA	intron (NM_001378357, intron 8 of 13)	MER52A|LTR|ERV1	-32302	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
98609	chr17	47754151	47754650	+	0	NA	Intergenic	L1MEi|LINE|L1	21164	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
179328	chr4	182806321	182807200	+	0	NA	Intergenic	CpG	110493	NM_001351747	1635		NM_001921	ENSG00000129187	DCTD	-	dCMP deaminase	protein-coding
166078	chr3	108862601	108864000	+	0	NA	Intergenic	Intergenic	40514	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
127321	chr2	38947601	38947900	+	0	NA	intron (NM_001145451, intron 10 of 17)	intron (NM_001145451, intron 10 of 17)	12594	NR_028386	375196		NR_028386	ENSG00000269210	LOC375196	-	uncharacterized LOC375196	ncRNA
48991	chr12	13206451	13206750	+	0	NA	intron (NM_001423, intron 1 of 4)	intron (NM_001423, intron 1 of 4)	9874	NM_001423	2012		NM_001423	ENSG00000134531	EMP1	CL-20|EMP-1|TMP	epithelial membrane protein 1	protein-coding
120749	chr19	45402271	45402950	+	0	NA	intron (NM_001142502, intron 1 of 12)	intron (NM_001142502, intron 1 of 12)	2459	NM_006663	10848		NM_006663	ENSG00000104881	PPP1R13L	ARCME|CMAEA|IASPP|NKIP1|RAI|RAI4	protein phosphatase 1 regulatory subunit 13 like	protein-coding
63434	chr13	114104421	114105680	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-27095	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
124412	chr19	58442771	58443530	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-2997	NM_003433	7691		NM_003433	ENSG00000131849	ZNF132	pHZ-12	zinc finger protein 132	protein-coding
2710	chr1	10650051	10650150	+	0	NA	intron (NM_017766, intron 13 of 15)	intron (NM_017766, intron 13 of 15)	146546	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
201142	chr6	142905671	142906180	+	0	NA	intron (NM_006734, intron 1 of 9)	AluSz6|SINE|Alu	39251	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
79627	chr16	1123651	1124230	+	0	NA	Intergenic	Intergenic	-27696	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
89015	chr16	88114701	88114900	+	0	NA	Intergenic	Intergenic	-13815	NR_120310	400553		NR_120310	ENSG00000205037	LOC400553	-	uncharacterized LOC400553	ncRNA
175750	chr4	77750351	77750750	+	0	NA	intron (NM_144571, intron 5 of 11)	AluY|SINE|Alu	68514	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
63252	chr13	113944601	113945280	+	0	NA	Intergenic	Intergenic	-15949	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
16768	chr1	155420871	155421430	+	0	NA	intron (NM_018489, intron 5 of 27)	AluJb|SINE|Alu	-12030	NR_034180	645682		NR_034180	ENSG00000237872	POU5F1P4	OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1	POU class 5 homeobox 1 pseudogene 4	pseudo
136160	chr2	174342551	174342950	+	0	NA	Intergenic	CpG	7796	NM_001145250	100131390		NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding
140101	chr2	231463611	231465680	+	0	NA	promoter-TSS (NM_005381)	promoter-TSS (NM_005381)	-161	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
148660	chr21	6117321	6117680	+	0	NA	intron (NM_173354, intron 7 of 13).2	intron (NM_173354, intron 7 of 13).2	6369	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
7544	chr1	34967321	34967680	+	0	NA	Intergenic	SVA_C|Retroposon|SVA	11206	NR_037869	653160		NR_037869	ENSG00000293382	GPR199P	-	G protein-coupled receptor 199, pseudogene	ncRNA
33781	chr10	123000051	123000550	+	0	NA	intron (NM_001372126, intron 1 of 3)	L1ME3A|LINE|L1	8387	NM_001271840	64376		NM_001271840	ENSG00000095574	IKZF5	PEGASUS|THC7|ZNFN1A5	IKAROS family zinc finger 5	protein-coding
141519	chr2	241214151	241214680	+	0	NA	intron (NM_001370694, intron 17 of 24)	intron (NM_001370694, intron 17 of 24)	25738	NM_001370694	50636		NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding
236666	chrX	76267871	76268030	+	0	NA	Intergenic	L1PA2|LINE|L1	94888	NM_016500	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
215598	chr7	158992801	158993030	+	0	NA	Intergenic	CpG	-15439	NR_024394	154822		NM_198345	ENSG00000231419	LINC00689	STORM	long intergenic non-protein coding RNA 689	ncRNA
180353	chr5	6730551	6730650	+	0	NA	intron (NM_001171805, intron 1 of 12)	intron (NM_001171805, intron 1 of 12)	17168	NM_006999	11044		NM_006999	ENSG00000112941	TENT4A	LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5	terminal nucleotidyltransferase 4A	protein-coding
10342	chr1	64920501	64920900	+	0	NA	intron (NM_001321852, intron 1 of 24)	MIR3|SINE|MIR	45849	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
229116	chr9	114402601	114402800	+	0	NA	3' UTR (NM_001173425, exon 12 of 12)	3' UTR (NM_001173425, exon 12 of 12)	-8295	NM_030767	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
129610	chr2	70104751	70105200	+	0	NA	Intergenic	Intergenic	17498	NM_006196	5093		NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding
48586	chr12	10309171	10309530	+	0	NA	intron (NM_007334, intron 1 of 4)	intron (NM_007334, intron 1 of 4)	1480	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
78887	chr15	100879351	100879850	+	0	NA	promoter-TSS (NM_000693)	promoter-TSS (NM_000693)	-231	NM_000693	220		NM_000693	ENSG00000184254	ALDH1A3	ALDH1A6|ALDH6|MCOP8|RALDH3	aldehyde dehydrogenase 1 family member A3	protein-coding
79730	chr16	1328471	1328830	+	0	NA	Intergenic	AluSg7|SINE|Alu	-4995	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
2083	chr1	7950301	7950500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9561	NM_001561	3604		NM_001561	ENSG00000049249	TNFRSF9	4-1BB|CD137|CDw137|ILA|IMD109	TNF receptor superfamily member 9	protein-coding
237025	chrX	102709621	102709880	+	0	NA	intron (NR_146585, intron 2 of 6)	L2a|LINE|L2	-2300	NR_146587	100528062		NM_001199818	ENSG00000286237	ARMCX5-GPRASP2	ARMCX5-GPRASP2-BHLHB9-LINC00630|GPRASP3|bHLHb9|p60TRP	ARMCX5-GPRASP2 readthrough	protein-coding
103788	chr17	79023801	79025400	+	0	NA	intron (NM_198594, intron 1 of 2)	CpG	431	NM_030968	114897		NM_030968	ENSG00000173918	C1QTNF1	CTRP1|GIP|ZSIG37	C1q and TNF related 1	protein-coding
29890	chr10	73094121	73094700	+	0	NA	intron (NM_001142595, intron 1 of 15)	Charlie4z|DNA|hAT-Charlie	2564	NM_001142596	5033		NM_000917	ENSG00000122884	P4HA1	P4HA	prolyl 4-hydroxylase subunit alpha 1	protein-coding
186448	chr5	137050201	137050400	+	0	NA	intron (NM_004598, intron 6 of 10)	L1PA2|LINE|L1	-77897	NR_134246	105379192		NR_134246		LOC105379192	-	uncharacterized LOC105379192	ncRNA
7079	chr1	32026701	32026900	+	0	NA	intron (NR_073498, intron 1 of 8)	AluSx|SINE|Alu	12932	NM_001271878	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
173246	chr4	6957421	6957680	+	0	NA	intron (NM_001330638, intron 1 of 12)	intron (NM_001330638, intron 1 of 12)	3384	NM_001330638	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
149994	chr21	36979151	36979650	+	0	NA	intron (NR_148020, intron 1 of 10)	intron (NR_148020, intron 1 of 10)	1497	NM_001352516	3141		NM_000411	ENSG00000159267	HLCS	HCS	holocarboxylase synthetase	protein-coding
182055	chr5	55933401	55934230	+	0	NA	Intergenic	Intergenic	61148	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
23218	chr1	227727851	227729350	+	0	NA	promoter-TSS (NM_001323930)	promoter-TSS (NM_001323930)	82	NR_136654	116841		NM_053052	ENSG00000143740	SNAP47	C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1	synaptosome associated protein 47	protein-coding
68876	chr14	91321101	91321700	+	0	NA	intron (NM_001080414, intron 12 of 29)	intron (NM_001080414, intron 12 of 29)	-67520	NM_003485	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
170979	chr3	194582021	194583000	+	0	NA	Intergenic	Intergenic	-1758	NR_047573	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
200144	chr6	130282071	130282580	+	0	NA	intron (NM_001258275, intron 2 of 13)	intron (NM_001258275, intron 2 of 13)	-59374	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
31847	chr10	99733621	99734100	+	0	NA	intron (NM_015960, intron 1 of 8)	intron (NM_015960, intron 1 of 8)	1626	NM_015960	51076		NM_015960	ENSG00000119929	CUTC	CGI-32	cutC copper transporter	protein-coding
25956	chr10	11602851	11603350	+	0	NA	intron (NM_014688, intron 1 of 14)	intron (NM_014688, intron 1 of 14)	-8201	NR_160647	107984208		NR_160647	ENSG00000271360	USP6NL-AS1	-	USP6NL antisense RNA 1	ncRNA
37994	chr11	35046521	35046900	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	91322	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
61399	chr13	51629551	51630050	+	0	NA	intron (NM_052950, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	45338	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
223875	chr9	224671	225350	+	0	NA	intron (NM_203447, intron 1 of 47)	intron (NM_203447, intron 1 of 47)	-9260	NR_160804	157983		NM_152569	ENSG00000183784	DOCK8-AS1	C9orf66	DOCK8 antisense RNA 1	ncRNA
65391	chr14	50780251	50780750	+	0	NA	intron (NM_020921, intron 5 of 30)	intron (NM_020921, intron 5 of 30)	-41297	NR_135258	105370489		NR_135258	ENSG00000258843	LOC105370489	-	uncharacterized LOC105370489	ncRNA
85487	chr16	50724271	50724780	+	0	NA	intron (NR_163434, intron 10 of 12)	MER57C2|LTR|ERV1	-17561	NM_001378744	1540		NM_015247	ENSG00000083799	CYLD	BRSS|CDMT|CYLD1|CYLDI|EAC|FTDALS8|MFT|MFT1|SBS|TEM|USPL2	CYLD lysine 63 deubiquitinase	protein-coding
29865	chr10	72369071	72369230	+	0	NA	intron (NM_006077, intron 11 of 11)	AluJr|SINE|Alu	-14231	NM_001002762	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
146546	chr20	49982201	49983600	+	0	NA	promoter-TSS (NM_005985)	promoter-TSS (NM_005985)	-80	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
223340	chr8	143836401	143836980	+	0	NA	intron (NM_178564, intron 14 of 17)	G-rich|Low_complexity|Low_complexity	1126	NR_106904	102466748		NR_106904	ENSG00000284142	MIR6845	hsa-mir-6845	microRNA 6845	ncRNA
238540	chrX	153755171	153755330	+	0	NA	Intergenic	L1MA9|LINE|L1	-8946	NM_001163257	5365		NM_005393	ENSG00000198753	PLXNB3	PLEXB3|PLEXR|PLXN6	plexin B3	protein-coding
148355	chr20	63843651	63844230	+	0	NA	Intergenic	Intergenic	-12676	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
24494	chr1	244406721	244406980	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	45059	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
139348	chr2	219631351	219631650	+	0	NA	intron (NR_048551, intron 6 of 22)	intron (NR_048551, intron 6 of 22)	3870	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
125361	chr2	11106001	11106400	+	0	NA	intron (NR_040080, intron 7 of 8)	AluSx1|SINE|Alu	25976	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
67432	chr14	70643701	70643900	+	0	NA	intron (NM_015351, intron 1 of 2)	intron (NM_015351, intron 1 of 2)	1884	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
102125	chr17	75046481	75048280	+	0	NA	promoter-TSS (NM_006356)	promoter-TSS (NM_006356)	155	NM_015353	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
219759	chr8	81088471	81088630	+	0	NA	intron (NM_018440, intron 1 of 8)	intron (NM_018440, intron 1 of 8)	23518	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
14419	chr1	144326801	144327050	+	0	NA	Intergenic	Intergenic	-12987	NR_160535	105371215		NR_160535		LOC105371215	-	uncharacterized LOC105371215	ncRNA
111321	chr19	3622451	3622950	+	0	NA	intron (NM_021231, intron 2 of 10)	MLT1C|LTR|ERVL-MaLR	4090	NM_001080543	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
126514	chr2	28420221	28420480	+	0	NA	Intergenic	AluSq|SINE|Alu	-25678	NR_103831	403150		NR_103831	ENSG00000229951	FOSL2-AS1	-	FOSL2 antisense RNA 1	ncRNA
100994	chr17	64636671	64637030	+	0	NA	intron (NM_022739, intron 1 of 18)	L1MB7|LINE|L1	25457	NM_022739	64750		NM_022739	ENSG00000108854	SMURF2	-	SMAD specific E3 ubiquitin protein ligase 2	protein-coding
71524	chr14	106164671	106164830	+	0	NA	Intergenic	Intergenic	-122924	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
10708	chr1	75720751	75721100	+	0	NA	Intergenic	MER4E|LTR|ERV1	-3422	NM_001286043	34		NM_000016	ENSG00000117054	ACADM	ACAD1|MCAD|MCADH	acyl-CoA dehydrogenase medium chain	protein-coding
11006	chr1	84680901	84681100	+	0	NA	intron (NM_014021, intron 1 of 14)	intron (NM_014021, intron 1 of 14)	9461	NM_001166294	117178		NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding
339	chr1	998671	999600	+	0	NA	exon (NM_021170, exon 4 of 4)	exon (NM_021170, exon 4 of 4)	962	NM_021170	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
131373	chr2	96210001	96210400	+	0	NA	intron (NR_046322, intron 1 of 3)	HUERS-P1-int|LTR|ERV1	-1373	NM_001385622	56910		NM_020151	ENSG00000084090	STARD7	ADCME|BAFME2|FAME|FAME2|FCMTE2|GTT1	StAR related lipid transfer domain containing 7	protein-coding
195515	chr6	37206771	37206930	+	0	NA	Intergenic	L2b|LINE|L2	36698	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
208374	chr7	66651221	66651780	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3019	NR_110037	100996437		NR_110037	ENSG00000226824	LOC100996437	-	uncharacterized LOC100996437	ncRNA
86648	chr16	67454771	67454930	+	0	NA	intron (NM_004691, intron 1 of 7)	L2|LINE|L2	23729	NM_000196	3291		NM_000196	ENSG00000176387	HSD11B2	AME|AME1|HSD11K|HSD2|SDR9C3	hydroxysteroid 11-beta dehydrogenase 2	protein-coding
233485	chr9	137845101	137845530	+	0	NA	Intergenic	Intergenic	6896	NR_030333	693187		NR_030333	ENSG00000207693	MIR602	MIRN602|hsa-mir-602	microRNA 602	ncRNA
59449	chr13	25901401	25902080	+	0	NA	intron (NM_016529, intron 33 of 36)	intron (NM_016529, intron 33 of 36)	150276	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
230292	chr9	127944821	127945080	+	0	NA	intron (NM_203305, intron 5 of 7)	CpG-28830	5764	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
162401	chr3	48211451	48212180	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-11680	NM_004345	820		NM_004345	ENSG00000164047	CAMP	CAP-18|CAP18|CRAMP|FALL-39|FALL39|HSD26|LL37	cathelicidin antimicrobial peptide	protein-coding
156829	chr22	41942671	41942900	+	0	NA	intron (NM_001304373, intron 3 of 3)	AluJr|SINE|Alu	-2566	NM_001110215	79019		NM_024053	ENSG00000100162	CENPM	C22orf18|CENP-M|PANE1	centromere protein M	protein-coding
95952	chr17	39027001	39027430	+	0	NA	promoter-TSS (NR_135645)	promoter-TSS (NR_135645)	-105	NR_135645	105371766		NR_135645	ENSG00000266013	LINC02079	-	long intergenic non-protein coding RNA 2079	ncRNA
67254	chr14	69010501	69010900	+	0	NA	Intergenic	AluSx1|SINE|Alu	31018	NR_073422	161159		NR_073422	ENSG00000259062	ACTN1-DT	ACTN1-AS1|C14orf84	ACTN1 divergent transcript	ncRNA
233618	chrX	377301	377700	+	0	NA	intron (NM_013239, intron 1 of 12)	intron (NM_013239, intron 1 of 12)	9407	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
106678	chr18	23228701	23229600	+	0	NA	intron (NR_023359, intron 4 of 6)	AluSq|SINE|Alu	73325	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
100129	chr17	58380071	58380630	+	0	NA	intron (NM_017763, intron 2 of 9)	intron (NM_017763, intron 2 of 9)	22371	NM_001305545	54894		NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
4552	chr1	22039471	22041300	+	0	NA	Intergenic	Intergenic	-12324	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
230127	chr9	127721591	127722350	+	0	NA	intron (NM_144965, intron 6 of 13)	intron (NM_144965, intron 6 of 13)	5891	NM_144965	158248		NM_144965	ENSG00000167094	TTC16	-	tetratricopeptide repeat domain 16	protein-coding
143336	chr20	25739671	25740100	+	0	NA	Intergenic	LTR47B3|LTR|ERVL	-11323	NR_135006	105372582		NR_135006		LOC105372582	-	uncharacterized LOC105372582	ncRNA
87706	chr16	74983421	74983680	+	0	NA	intron (NM_030581, intron 1 of 25)	intron (NM_030581, intron 1 of 25)	1573	NM_030581	79726		NM_030581	ENSG00000103091	WDR59	CDW12|FP977|p90-120	WD repeat domain 59	protein-coding
83504	chr16	27440771	27440930	+	0	NA	intron (NM_181078, intron 4 of 8)	AluSz|SINE|Alu	12543	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
98972	chr17	48723351	48723930	+	0	NA	promoter-TSS (NM_001282276)	promoter-TSS (NM_001282276)	-52	NM_001282276	360205		NM_001282275	ENSG00000229637	PRAC2	C17orf93|HOXB-AS5|HOXB13-AS1|HOXBAS5|NCRNA00253	PRAC2 small nuclear protein	protein-coding
229733	chr9	124881271	124881630	+	0	NA	intron (NM_002077, intron 21 of 22)	intron (NM_002077, intron 21 of 22)	19320	NM_030978	81873		NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding
131079	chr2	88831871	88832030	+	0	NA	Intergenic	Intergenic	19580	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
201077	chr6	142781371	142781530	+	0	NA	intron (NM_006734, intron 3 of 9)	intron (NM_006734, intron 3 of 9)	-143561	NR_027312	153910		NR_027311	ENSG00000236366	LOC153910	-	uncharacterized LOC153910	ncRNA
226530	chr9	71910251	71912230	+	0	NA	promoter-TSS (NM_001025780)	promoter-TSS (NM_001025780)	5	NM_016014	51104		NM_016014	ENSG00000107362	ABHD17B	C9orf77|CGI-67|FAM108B1	abhydrolase domain containing 17B, depalmitoylase	protein-coding
106351	chr18	13173601	13173800	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	-43982	NM_001378101	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
17577	chr1	156843101	156843530	+	0	NA	intron (NM_014215, intron 16 of 21)	intron (NM_014215, intron 16 of 21)	15802	NM_014215	3645		NM_014215	ENSG00000027644	INSRR	IRR	insulin receptor related receptor	protein-coding
40458	chr11	64217971	64218130	+	0	NA	intron (NM_001382363, intron 5 of 13)	AluY|SINE|Alu	7819	NM_001160393	83707		NM_031472	ENSG00000149743	TRPT1	-	tRNA phosphotransferase 1	protein-coding
38202	chr11	36388501	36388700	+	0	NA	intron (NM_024841, intron 2 of 9)	L1ME4b|LINE|L1	-12397	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
171299	chr3	195952401	195953160	+	0	NA	Intergenic	Intergenic	37499	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
98301	chr17	46236621	46237150	+	0	NA	Intergenic	AluYk4|SINE|Alu	-11518	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
8469	chr1	40784971	40785130	+	0	NA	intron (NM_172163, intron 1 of 12)	(GCCCT)n|Simple_repeat|Simple_repeat	1263	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
6403	chr1	27961701	27962100	+	0	NA	intron (NM_018053, intron 1 of 2)	intron (NM_018053, intron 1 of 2)	1927	NM_018053	55113		NM_018053	ENSG00000158156	XKR8	XRG8|hXkr8	XK related 8	protein-coding
112774	chr19	7469951	7470250	+	0	NA	intron (NM_001367823, intron 28 of 28)	intron (NM_001367823, intron 28 of 28)	18935	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
39250	chr11	57709871	57710450	+	0	NA	intron (NM_153450, intron 1 of 3)	AluJr4|SINE|Alu	2055	NR_157587	219541		NM_153450	ENSG00000156603	MED19	DT2P1G7|LCMR1|MED19AS	mediator complex subunit 19	protein-coding
217526	chr8	29253171	29254030	+	0	NA	intron (NM_015254, intron 1 of 39)	intron (NM_015254, intron 1 of 39)	9470	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
34832	chr11	302701	303230	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-3439	NM_001025295	387733		NM_001025295	ENSG00000206013	IFITM5	BRIL|DSPA1|Hrmp1|OI5|fragilis4	interferon induced transmembrane protein 5	protein-coding
215762	chr8	2044851	2045150	+	0	NA	promoter-TSS (NM_003970).2	promoter-TSS (NM_003970).2	-46	NM_003970	9172		NM_003970	ENSG00000036448	MYOM2	TTNAP	myomesin 2	protein-coding
179686	chr4	190073221	190073480	+	0	NA	Intergenic	CpG	8121	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
135911	chr2	171435551	171435650	+	0	NA	promoter-TSS (NM_001321161)	promoter-TSS (NM_001321161)	-797	NM_024770	79828		NM_024770	ENSG00000123600	METTL8	TIP	methyltransferase 8, tRNA N3-cytidine	protein-coding
221722	chr8	127386771	127387450	+	0	NA	intron (NR_117099, intron 3 of 3)	L2a|LINE|L2	-13289	NR_109834	101805488		NR_109834	ENSG00000280997	CCAT2	LINC00873|NCCP1	colon cancer associated transcript 2	ncRNA
1012	chr1	1857271	1857800	+	0	NA	intron (NM_001282538, intron 1 of 9)	intron (NM_001282538, intron 1 of 9)	33552	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
28976	chr10	63252001	63253050	+	0	NA	intron (NM_001322252, intron 2 of 24)	MLT2D|LTR|ERVL	16698	NM_001282948	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
192430	chr6	24886401	24886600	+	0	NA	intron (NM_001286446, intron 1 of 13)	L1MC4|LINE|L1	-9135	NM_001286447	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
149129	chr21	17693801	17694070	+	0	NA	Intergenic	Intergenic	-81034	NM_001130914	10950		NM_006806	ENSG00000154640	BTG3	ANA|ANA/BTG3|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding
82390	chr16	16127401	16127970	+	0	NA	intron (NM_004996, intron 26 of 30)	intron (NM_004996, intron 26 of 30)	95786	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
92719	chr17	14205721	14206650	+	0	NA	intron (NM_001303, intron 6 of 6)	intron (NM_001303, intron 6 of 6)	30677	NM_001007530	146822		NM_001007530	ENSG00000223510	CDRT15	-	CMT1A duplicated region transcript 15	protein-coding
30215	chr10	74872171	74872530	+	0	NA	intron (NM_012330, intron 3 of 17).2	L3|LINE|CR1	-40436	NR_134476								
57270	chr12	121624371	121625490	+	0	NA	Intergenic	L2a|LINE|L2	-1620	NM_032790	84876		NM_032790	ENSG00000276045	ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding
107245	chr18	38576721	38577380	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	919915	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
70373	chr14	101891321	101891780	+	0	NA	intron (NM_178587, intron 6 of 11)	CpG	-73023	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
65856	chr14	55053501	55054350	+	0	NA	intron (NM_144578, intron 1 of 3)	Tigger4a|DNA|TcMar-Tigger	2278	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
70425	chr14	102028001	102028200	+	0	NA	exon (NM_001376, exon 48 of 78)	exon (NM_001376, exon 48 of 78)	58944	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
69965	chr14	99753301	99753500	+	0	NA	intron (NM_001375411, intron 1 of 21)	intron (NM_001375411, intron 1 of 21)	15678	NM_001375411	2009		NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAP-1|EMAPL	EMAP like 1	protein-coding
141471	chr2	241073551	241073650	+	0	NA	non-coding (NR_138463, exon 7 of 7)	non-coding (NR_138463, exon 7 of 7)	28687	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
52286	chr12	54584171	54584830	+	0	NA	intron (NM_006741, intron 1 of 6)	L1PA16|LINE|L1	4159	NM_006741	5502		NM_006741	ENSG00000135447	PPP1R1A	I1|IPP1	protein phosphatase 1 regulatory inhibitor subunit 1A	protein-coding
229634	chr9	124134121	124134380	+	0	NA	Intergenic	AluY|SINE|Alu	122482	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
76071	chr15	72456971	72457330	+	0	NA	intron (NR_135678, intron 1 of 3)	AluSc|SINE|Alu	17089	NR_135678	105370888		NR_135678	ENSG00000261423	TMEM202-AS1	-	TMEM202 antisense RNA 1	ncRNA
190891	chr6	2762901	2763580	+	0	NA	intron (NM_001347872, intron 1 of 12)	LTR12C|LTR|ERV1	-2153	NM_020135	56897		NM_020135	ENSG00000124535	WRNIP1	CFAP93|FAP93|WHIP|bA420G6.2	WRN helicase interacting protein 1	protein-coding
169316	chr3	158837451	158837550	+	0	NA	Intergenic	Intergenic	35446	NM_001167903	64747		NM_022736	ENSG00000118855	MFSD1	Minerva|SMAP4	major facilitator superfamily domain containing 1	protein-coding
231972	chr9	133164821	133165230	+	0	NA	Intergenic	Intergenic	-1111	NM_021996	26301		NM_021996	ENSG00000148288	GBGT1	A3GALNT|FS|UNQ2513	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)	protein-coding
180059	chr5	1086071	1086430	+	0	NA	intron (NM_006598, intron 6 of 23).2	intron (NM_006598, intron 6 of 23).2	-23276	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
97528	chr17	44003971	44005400	+	0	NA	promoter-TSS (NM_153006)	promoter-TSS (NM_153006)	63	NM_153006	162417		NM_153006	ENSG00000161653	NAGS	AGAS|ARGA	N-acetylglutamate synthase	protein-coding
163140	chr3	50140171	50140580	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-14683	NM_001318798	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
172975	chr4	3980251	3980430	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-24912	NR_130740	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
238273	chrX	149465271	149465830	+	0	NA	Intergenic	LTR16C|LTR|ERVL	39756	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
82365	chr16	15990671	15991030	+	0	NA	intron (NM_004996, intron 1 of 30)	AluYj4|SINE|Alu	41234	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
101274	chr17	66364521	66365180	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	52004	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
151470	chr21	46230421	46230850	+	0	NA	intron (NR_110565, intron 2 of 3)	intron (NR_110565, intron 2 of 3)	1404	NR_110566	114044		NM_018118	ENSG00000215424	MCM3AP-AS1	C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031	MCM3AP antisense RNA 1	ncRNA
132621	chr2	108615471	108616150	+	0	NA	intron (NM_001193482, intron 1 of 9)	intron (NM_001193482, intron 1 of 9)	-5441	NM_001193484	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
6093	chr1	27285801	27286180	+	0	NA	intron (NM_015023, intron 5 of 15)	intron (NM_015023, intron 5 of 15)	-36155	NM_032125	84065		NM_032125	ENSG00000186501	TMEM222	C1orf160|NEDMOSBA	transmembrane protein 222	protein-coding
69990	chr14	100010171	100010550	+	0	NA	intron (NM_001330221, intron 1 of 13)	MER4E|LTR|ERV1	38938	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
219931	chr8	86507801	86509000	+	0	NA	intron (NM_001317807, intron 1 of 9)	CpG	286	NM_016033	51115		NM_016033	ENSG00000176623	RMDN1	CGI-90|FAM82B|RMD-1|RMD1	regulator of microtubule dynamics 1	protein-coding
77481	chr15	84563421	84563780	+	0	NA	intron (NR_003661, intron 1 of 5)	intron (NR_003661, intron 1 of 5)	-7049	NR_038274	100506874		NR_038273		LINC00933	-	long intergenic non-protein coding RNA 933	ncRNA
112673	chr19	7012801	7013080	+	0	NA	Intergenic	Intergenic	-6525	NR_024372	497049		NM_001011541		MARK2P21	-	MARK2 pseudogene 21	pseudo
1127	chr1	2135321	2136700	+	0	NA	intron (NR_146911, intron 2 of 15)	intron (NR_146911, intron 2 of 15)	31294	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
52073	chr12	54040051	54040680	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	6415	NR_030753	693200		NR_030753	ENSG00000207571	MIR615	MIRN615|hsa-mir-615|mir-615	microRNA 615	ncRNA
43201	chr11	75420201	75420400	+	0	NA	intron (NM_001256802, intron 6 of 6)	intron (NM_001256802, intron 6 of 6)	10329	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
218221	chr8	42033771	42034450	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-17640	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
14843	chr1	146370971	146371130	+	0	NA	Intergenic	Intergenic	-5757	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
7688	chr1	35885651	35886400	+	0	NA	intron (NM_001317122, intron 1 of 18)	intron (NM_001317122, intron 1 of 18)	2816	NM_012199	26523		NM_012199	ENSG00000092847	AGO1	EIF2C|EIF2C1|GERP95|NEDLBAS|Q99|hAgo1	argonaute RISC component 1	protein-coding
30654	chr10	80473051	80473150	+	0	NA	intron (NM_001351272, intron 2 of 9)	Charlie15a|DNA|hAT-Charlie	4859	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
174308	chr4	38560951	38561050	+	0	NA	Intergenic	Intergenic	-3003	NR_146991	105374411		NR_146991		LINC02278	-	long intergenic non-protein coding RNA 2278	ncRNA
55642	chr12	107105451	107105550	+	0	NA	Intergenic	Tigger9a|DNA|TcMar-Tigger	-11951	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
190397	chr5	179801751	179802700	+	0	NA	5' UTR (NM_054013, exon 1 of 14)	5' UTR (NM_054013, exon 1 of 14)	650	NM_054013	11282		NM_014275	ENSG00000161013	MGAT4B	GNT-IV|GNT-IVB	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B	protein-coding
90087	chr16	90025921	90026580	+	0	NA	intron (NM_001286208, intron 1 of 9)	intron (NM_001286208, intron 1 of 9)	3570	NM_001481	2622		NM_001481	ENSG00000141013	GAS8	CILD33|DRC4|GAS11	growth arrest specific 8	protein-coding
88804	chr16	87396101	87396600	+	0	NA	intron (NM_022818, intron 1 of 3)	AluY|SINE|Alu	4014	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
57750	chr12	122964601	122964980	+	0	NA	intron (NM_203444, intron 1 of 11)	intron (NM_203444, intron 1 of 11)	1673	NM_001243014	23457		NM_019624	ENSG00000150967	ABCB9	EST122234|TAPL	ATP binding cassette subfamily B member 9	protein-coding
59813	chr13	30398001	30398400	+	0	NA	Intergenic	AluSx|SINE|Alu	24044	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
153490	chr22	26431701	26431900	+	0	NA	intron (NM_020437, intron 1 of 3)	intron (NM_020437, intron 1 of 3)	2540	NM_020437	57168		NM_020437	ENSG00000128203	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
113410	chr19	9582771	9583520	+	0	NA	intron (NM_001308269, intron 1 of 4)	AluSx3|SINE|Alu	1359	NM_001008727	7675		NM_001008727	ENSG00000197961	ZNF121	D19S204|ZHC32|ZNF20	zinc finger protein 121	protein-coding
84452	chr16	30425721	30426580	+	0	NA	intron (NR_134470, intron 2 of 2)	L2a|LINE|L2	3650	NR_134471	79077		NM_024096	ENSG00000179958	DCTPP1	CDA03|RS21C6|XTP3TPA	dCTP pyrophosphatase 1	protein-coding
103294	chr17	77847551	77848050	+	0	NA	Intergenic	Intergenic	36287	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
143760	chr20	32384501	32385130	+	0	NA	intron (NM_015338, intron 3 of 11)	intron (NM_015338, intron 3 of 11)	25750	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
181981	chr5	55176271	55177430	+	0	NA	Intergenic	Intergenic	-3673	NM_152623	166979		NM_152623	ENSG00000164287	CDC20B	G6VTS76519	cell division cycle 20B	protein-coding
169537	chr3	170163771	170164130	+	0	NA	intron (NM_001308116, intron 4 of 14)	AluJo|SINE|Alu	17783	NM_001308116	80012		NM_024947	ENSG00000173889	PHC3	EDR3|HPH3	polyhomeotic homolog 3	protein-coding
27144	chr10	28325251	28325750	+	0	NA	Intergenic	AluSz6|SINE|Alu	-22436	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
153761	chr22	29457821	29458180	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-15871	NR_002727	10740		NR_002727		RFPL1S	NCRNA00006|RFPL1-AS|RFPL1-AS1|RFPL1AS	RFPL1 antisense RNA 1	ncRNA
45966	chr11	121453901	121454480	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	1876	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
170690	chr3	187801171	187801330	+	0	NA	Intergenic	MIRc|SINE|MIR	-55782	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
1175	chr1	2224121	2224800	+	0	NA	Intergenic	L2b|LINE|L2	-3859	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
120572	chr19	44994221	44995080	+	0	NA	Intergenic	Intergenic	-6814	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
143491	chr20	31075171	31075900	+	0	NA	Intergenic	(GGAAT)n|Simple_repeat|Simple_repeat	-182129	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
125438	chr2	12007621	12007880	+	0	NA	non-coding (NR_110198, exon 2 of 3)	non-coding (NR_110198, exon 2 of 3)	634	NR_110198	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
157055	chr22	42584601	42585150	+	0	NA	non-coding (NR_103820, exon 9 of 9)	non-coding (NR_103820, exon 9 of 9)	-2864	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
233992	chrX	2889471	2890030	+	0	NA	Intergenic	MER41A|LTR|ERV1	-15154	NR_144459	100506356		NR_144459	ENSG00000229851	ARSD-AS1	-	ARSD antisense RNA 1	ncRNA
84234	chr16	29992451	29992550	+	0	NA	TTS (NM_004783)	TTS (NM_004783)	3117	NM_003609	8479		NM_003609	ENSG00000149929	HIRIP3	-	HIRA interacting protein 3	protein-coding
184051	chr5	91389971	91390740	+	0	NA	intron (NR_027435, intron 1 of 2)	AluSx1|SINE|Alu	-7038	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
188911	chr5	160260971	160261230	+	0	NA	intron (NM_001308173, intron 3 of 5)	intron (NM_001308173, intron 3 of 5)	31594	NM_001445	2172		NM_001445	ENSG00000170231	FABP6	I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP	fatty acid binding protein 6	protein-coding
218843	chr8	59655671	59656380	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	536815	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
201226	chr6	143565771	143566250	+	0	NA	intron (NR_027113, intron 1 of 2)	intron (NR_027113, intron 1 of 2)	3329	NR_027113	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
75404	chr15	65764301	65765230	+	0	NA	intron (NM_001376919, intron 1 of 31)	AluJr|SINE|Alu	27528	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
49855	chr12	34125951	34126650	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	103804	NM_032834	84920		NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10 alpha-1,2-glucosyltransferase	protein-coding
194899	chr6	34693551	34694130	+	0	NA	intron (NM_022758, intron 1 of 3)	AluJb|SINE|Alu	-2314	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
179263	chr4	176192021	176192330	+	0	NA	intron (NM_144644, intron 4 of 5)	intron (NM_144644, intron 4 of 5)	3410	NM_144644	132851		NM_144644	ENSG00000150628	SPATA4	CFAP178|FAP178|SPEF1B|TSARG2	spermatogenesis associated 4	protein-coding
236859	chrX	79400571	79400890	+	0	NA	Intergenic	Intergenic	-33178	NM_001171581	9452		NM_004867	ENSG00000078596	ITM2A	BRICD2A|E25A	integral membrane protein 2A	protein-coding
143517	chr20	31543471	31543630	+	0	NA	intron (NM_178580, intron 3 of 12)	AluSx1|SINE|Alu	29108	NM_178581	81502		NM_030789	ENSG00000101294	HM13	H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1	histocompatibility minor 13	protein-coding
106857	chr18	24057401	24057600	+	0	NA	intron (NM_001135993, intron 1 of 13)	L1ME2|LINE|L1	-42040	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
168088	chr3	138222351	138222450	+	0	NA	intron (NM_001267042, intron 3 of 20)	intron (NM_001267042, intron 3 of 20)	34869	NM_015396	25852		NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
33465	chr10	119057571	119057730	+	0	NA	intron (NM_003750, intron 12 of 21)	AluSx1|SINE|Alu	2488	NR_002917	641451		NR_002917	ENSG00000207468	SNORA19	ACA19	small nucleolar RNA, H/ACA box 19	snoRNA
225109	chr9	33452421	33453480	+	0	NA	Intergenic	Intergenic	-5357	NM_001318144	360		NM_004925	ENSG00000165272	AQP3	AQP-3|GIL	aquaporin 3 (Gill blood group)	protein-coding
164405	chr3	58487401	58488230	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-4281	NM_001128214	200845		NM_153331	ENSG00000168301	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
146579	chr20	50099151	50099550	+	0	NA	intron (NM_001282579, intron 1 of 4)	MLT1B|LTR|ERVL-MaLR	13800	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
165003	chr3	71367151	71367450	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-62529	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
94987	chr17	32347651	32348630	+	0	NA	Intergenic	AluSx|SINE|Alu	-1969	NR_030362	693217		NR_030362	ENSG00000283774	MIR632	MIRN632|hsa-mir-632	microRNA 632	ncRNA
111545	chr19	4037851	4037950	+	0	NA	3' UTR (NM_015897, exon 11 of 11)	3' UTR (NM_015897, exon 11 of 11)	27629	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
79121	chr16	214371	214880	+	0	NA	intron (NM_018032, intron 3 of 8)	AluJb|SINE|Alu	14824	NM_018032	55692		NM_018032	ENSG00000007392	LUC7L	LUC7B1|Luc7|SR+89|hLuc7B1	LUC7 like	protein-coding
44531	chr11	107898071	107898530	+	0	NA	Intergenic	Intergenic	-30148	NM_017516	54734		NM_017516	ENSG00000179331	RAB39A	K28|RAB39	RAB39A, member RAS oncogene family	protein-coding
133142	chr2	112674221	112674600	+	0	NA	Intergenic	LTR50|LTR|ERVL	28471	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
170946	chr3	194343671	194344250	+	0	NA	intron (NM_001080513, intron 1 of 1)	intron (NM_001080513, intron 1 of 1)	7368	NM_001080513	1370		NM_001309	ENSG00000178772	CPN2	ACBP	carboxypeptidase N subunit 2	protein-coding
40810	chr11	64914951	64915330	+	0	NA	intron (NM_015104, intron 1 of 40)	intron (NM_015104, intron 1 of 40)	2069	NM_001367972	23130		NM_015104	ENSG00000110046	ATG2A	BLTP4A	autophagy related 2A	protein-coding
41483	chr11	66220851	66221380	+	0	NA	intron (NM_018026, intron 9 of 23)	intron (NM_018026, intron 9 of 23)	-36179	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
176217	chr4	84497101	84497730	+	0	NA	intron (NM_006168, intron 1 of 2)	CpG	1877	NM_006168	4825		NM_006168	ENSG00000163623	NKX6-1	NKX6.1|NKX6A	NK6 homeobox 1	protein-coding
161018	chr3	37863251	37863900	+	0	NA	intron (NM_005808, intron 1 of 6)	intron (NM_005808, intron 1 of 6)	1695	NM_001008392	10217		NM_005808	ENSG00000144677	CTDSPL	C3orf8|HYA22|PSR1|RBSP3|SCP3	CTD small phosphatase like	protein-coding
33490	chr10	119101821	119102350	+	0	NA	Intergenic	AluYa5|SINE|Alu	-2028	NR_130122	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
104121	chr17	80316701	80316900	+	0	NA	intron (NM_020954, intron 15 of 16)	L1MC4|LINE|L1	55948	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
173279	chr4	7057521	7058530	+	0	NA	TTS (NM_152293)	TTS (NM_152293)	10039	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
5272	chr1	25062621	25063100	+	0	NA	Intergenic	Intergenic	39357	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
120465	chr19	44693971	44694430	+	0	NA	Intergenic	Intergenic	-4951	NM_001039213	388551		NM_001039213	ENSG00000213892	CEACAM16	CEAL2|DFNA4B|DFNB113	CEA cell adhesion molecule 16, tectorial membrane component	protein-coding
117574	chr19	21398851	21399150	+	0	NA	intron (NM_175910, intron 1 of 1)	intron (NM_175910, intron 1 of 1)	1867	NM_001076678	284443		NM_145326	ENSG00000196268	ZNF493	-	zinc finger protein 493	protein-coding
39770	chr11	61906901	61907300	+	0	NA	intron (NM_013401, intron 4 of 9)	intron (NM_013401, intron 4 of 9)	10466	NM_013401	5866		NM_013401	ENSG00000167994	RAB3IL1	GRAB	RAB3A interacting protein like 1	protein-coding
212726	chr7	129831621	129832080	+	0	NA	3' UTR (NM_001202498, exon 7 of 7)	3' UTR (NM_001202498, exon 7 of 7)	-56836	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
79828	chr16	1433771	1434650	+	0	NA	TTS (NM_001143980)	TTS (NM_001143980)	3132	NM_001365310	105371045		NM_001365310	ENSG00000284395	PERCC1	DIAR11|ICR|gs104	proline and glutamate rich with coiled coil 1	protein-coding
133099	chr2	112628151	112628450	+	0	NA	Intergenic	Intergenic	15880	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
61029	chr13	48185821	48186830	+	0	NA	Intergenic	L1MB3|LINE|L1	-46881	NM_021999	9445		NM_021999	ENSG00000136156	ITM2B	ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2	integral membrane protein 2B	protein-coding
65021	chr14	39099901	39100200	+	0	NA	intron (NM_006364, intron 1 of 19)	intron (NM_006364, intron 1 of 19)	-3090	NR_146545	105370458		NR_146545	ENSG00000258651	SEC23A-AS1	-	SEC23A antisense RNA 1	ncRNA
203097	chr6	166414651	166416080	+	0	NA	intron (NM_021135, intron 19 of 20)	intron (NM_021135, intron 19 of 20)	-32425	NR_164831	51660		NM_016098	ENSG00000060762	MPC1	BRP44L|CGI-129|MPYCD|SLC54A1	mitochondrial pyruvate carrier 1	protein-coding
43886	chr11	88354971	88355380	+	0	NA	Intergenic	L2a|LINE|L2	-17439	NM_001114173	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
52108	chr12	54188771	54189730	+	0	NA	promoter-TSS (NM_001243790)	promoter-TSS (NM_001243790)	-256	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
73587	chr15	44532721	44533450	+	0	NA	Intergenic	AluSx|SINE|Alu	3815	NR_034171	645212		NR_034170	ENSG00000179523	EIF3J-DT	EIF3J-AS1	EIF3J divergent transcript	ncRNA
108326	chr18	63848171	63848330	+	0	NA	Intergenic	Intergenic	-39455	NM_002575	5055		NM_002575	ENSG00000197632	SERPINB2	HsT1201|PAI|PAI-2|PAI2|PLANH2	serpin family B member 2	protein-coding
76803	chr15	77032401	77032830	+	0	NA	intron (NM_001321135, intron 11 of 13)	(GAGGAT)n|Simple_repeat|Simple_repeat	37489	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
82020	chr16	11974851	11975150	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1734	NM_001376490	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
52460	chr12	55951301	55951500	+	0	NA	intron (NR_147026, intron 18 of 24)	intron (NR_147026, intron 18 of 24)	14642	NM_001384361	6490		NM_006928	ENSG00000185664	PMEL	D12S53E|HMB-45|HMB45|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100	premelanosome protein	protein-coding
175707	chr4	77155051	77155550	+	0	NA	Intergenic	Intergenic	-1907	NM_004354	901		NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding
165309	chr3	87225571	87226000	+	0	NA	TTS (NR_039958)	TTS (NR_039958)	492	NR_039958	100616161		NR_039958	ENSG00000264119	MIR4795	-	microRNA 4795	ncRNA
125867	chr2	24515751	24516380	+	0	NA	intron (NM_001362954, intron 1 of 23)	intron (NM_001362954, intron 1 of 23)	24188	NM_001362955	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
20100	chr1	187051671	187051850	+	0	NA	Intergenic	Intergenic	-41082	NR_126347	104169671		NR_126347	ENSG00000230426	LINC01036	-	long intergenic non-protein coding RNA 1036	ncRNA
20468	chr1	198611501	198611700	+	0	NA	Intergenic	MER67C|LTR|ERV1	-27368	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
111827	chr19	4512571	4513030	+	0	NA	exon (NM_001367868, exon 5 of 8)	exon (NM_001367868, exon 5 of 8)	5686	NM_001367868	729359		NM_001080400	ENSG00000167676	PLIN4	KIAA1881|MDRV|MRUPAV|NIPA2|S3-12	perilipin 4	protein-coding
128593	chr2	60939601	60939800	+	0	NA	TTS (NM_144709)	TTS (NM_144709)	58126	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
150157	chr21	38809001	38809400	+	0	NA	intron (NM_005239, intron 1 of 9)	MER33|DNA|hAT-Charlie	3271	NM_005239	2114		NM_005239	ENSG00000157557	ETS2	ETS2IT1	ETS proto-oncogene 2, transcription factor	protein-coding
133393	chr2	118222901	118223100	+	0	NA	Intergenic	Intergenic	-36614	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
35702	chr11	1925351	1926130	+	0	NA	intron (NM_001367849, intron 4 of 13)	intron (NM_001367849, intron 4 of 13)	2909	NM_001367843	7140		NM_006757	ENSG00000130595	TNNT3	DA2B2|TNTF|beta-TnTF	troponin T3, fast skeletal type	protein-coding
63576	chr14	20458671	20458830	+	0	NA	TTS (NM_001244249)	TTS (NM_001244249)	2684	NM_144568	90809		NM_144568	ENSG00000165782	PIP4P1	C14orf9|TMEM55B	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1	protein-coding
67774	chr14	73740271	73740780	+	0	NA	intron (NM_001043318, intron 1 of 11)	MER91A|DNA|hAT-Tip100	-18222	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
36031	chr11	2921151	2921250	+	0	NA	intron (NM_183233, intron 8 of 10)	AluY|SINE|Alu	8220	NM_003311	7262		NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding
52801	chr12	56727221	56727480	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2051	NM_001113202	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
52495	chr12	56020871	56022000	+	0	NA	exon (NM_001351090, exon 1 of 7)	exon (NM_001351090, exon 1 of 7)	392	NM_022465	64375		NM_022465	ENSG00000123411	IKZF4	EOS|ZNFN1A4	IKAROS family zinc finger 4	protein-coding
199928	chr6	127893401	127894800	+	0	NA	intron (NM_001164687, intron 1 of 5).2	L1M5|LINE|L1	6981	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
86426	chr16	66878001	66878630	+	0	NA	Intergenic	L2b|LINE|L2	-2200	NM_001329931	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
56066	chr12	110577401	110580130	+	0	NA	intron (NM_139283, intron 1 of 5)	intron (NM_139283, intron 1 of 5)	4553	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
30333	chr10	77173901	77174100	+	0	NA	intron (NM_001322836, intron 5 of 27)	intron (NM_001322836, intron 5 of 27)	33169	NR_120654	101929310		NR_120654	ENSG00000225497	KCNMA1-AS2	-	KCNMA1 antisense RNA 2	ncRNA
19982	chr1	184982101	184982600	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	-7842	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
122469	chr19	49533421	49535150	+	0	NA	exon (NM_020650, exon 3 of 7)	exon (NM_020650, exon 3 of 7)	6282	NM_020650	57333		NM_020650	ENSG00000142552	RCN3	RLP49	reticulocalbin 3	protein-coding
198238	chr6	99330051	99330380	+	0	NA	intron (NM_001346532, intron 4 of 6)	intron (NM_001346532, intron 4 of 6)	19459	NM_032511	84553		NM_032511	ENSG00000146267	FAXC	C6orf168|dJ273F20	failed axon connections homolog, metaxin like GST domain containing	protein-coding
67615	chr14	72891801	72892700	+	0	NA	exon (NM_001280544, exon 1 of 10)	exon (NM_001280544, exon 1 of 10)	399	NM_001280544	8110		NM_012074	ENSG00000205683	DPF3	BAF45C|CERD4|SMARCG3	double PHD fingers 3	protein-coding
148967	chr21	13871021	13871280	+	0	NA	Intergenic	THE1D-int|LTR|ERVL-MaLR	-22786	NR_026755	54055		NR_026755	ENSG00000290541	CYP4F29P	4F-se4[6:7:8]|C21orf15|CYP4F-se4[6:7:8]|CYP4F3LP	cytochrome P450 family 4 subfamily F member 29, pseudogene	pseudo
87223	chr16	69563421	69564910	+	0	NA	Intergenic	Intergenic	1703	NR_031719	100302119		NR_031719	ENSG00000223109	MIR1538	MIRN1538|hsa-mir-1538	microRNA 1538	ncRNA
213434	chr7	138466121	138466580	+	0	NA	intron (NM_015905, intron 1 of 18)	L1MEc|LINE|L1	6091	NM_003852	8805		NM_003852	ENSG00000122779	TRIM24	PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1	tripartite motif containing 24	protein-coding
61197	chr13	49303321	49303580	+	0	NA	Intergenic	L2a|LINE|L2	55525	NR_036439	81602		NM_030911	ENSG00000102543	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
221895	chr8	128576771	128576930	+	0	NA	Intergenic	Intergenic	-12171	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
134625	chr2	144413701	144414700	+	0	NA	intron (NM_001171653, intron 3 of 8)	intron (NM_001171653, intron 3 of 8)	-81131	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
74872	chr15	63567201	63567600	+	0	NA	intron (NR_046342, intron 9 of 15)	AluY|SINE|Alu	-29987	NM_001367807	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
694	chr1	1396971	1397330	+	0	NA	intron (NM_001350497, intron 1 of 9)	AluSq2|SINE|Alu	1192	NM_001350497	81669		NM_030937	ENSG00000221978	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
183561	chr5	80139421	80139930	+	0	NA	3' UTR (NM_001174072, exon 12 of 12)	3' UTR (NM_001174072, exon 12 of 12)	-56010	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
37068	chr11	12377351	12378100	+	0	NA	exon (NM_018222, exon 1 of 13)	exon (NM_018222, exon 1 of 13)	154	NM_018222	55742		NM_018222	ENSG00000197702	PARVA	CH-ILKBP|MXRA2	parvin alpha	protein-coding
174971	chr4	49631601	49632000	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	645158	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
196186	chr6	42660471	42660850	+	0	NA	intron (NM_001363705, intron 30 of 46)	intron (NM_001363705, intron 30 of 46)	61937	NM_000322	5961		NM_000322	ENSG00000112619	PRPH2	AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2	peripherin 2	protein-coding
176030	chr4	82361721	82362200	+	0	NA	intron (NM_001003810, intron 1 of 6)	Tigger15a|DNA|TcMar-Tigger	12031	NM_031370	3184		NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding
4140	chr1	19337401	19337880	+	0	NA	Intergenic	MER31A|LTR|ERV1	25314	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
13471	chr1	114572771	114573800	+	0	NA	intron (NM_005872, intron 4 of 6)	intron (NM_005872, intron 4 of 6)	8330	NM_005872	10286		NM_005872	ENSG00000116752	BCAS2	DAM1|SPF27|Snt309	BCAS2 pre-mRNA processing factor	protein-coding
95617	chr17	37605821	37606880	+	0	NA	intron (NM_001163544, intron 1 of 20).2	intron (NM_001163544, intron 1 of 20).2	3068	NM_001163546	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
216256	chr8	12430671	12431300	+	0	NA	intron (NR_148878, intron 3 of 6)	intron (NR_148878, intron 3 of 6)	5313	NR_148878	653333		NM_001137610	ENSG00000145002	FAM86B2	-	family with sequence similarity 86 member B2	protein-coding
72548	chr15	34364951	34365500	+	0	NA	exon (NM_153613, exon 3 of 14)	exon (NM_153613, exon 3 of 14)	1971	NM_153613	254531		NM_153613	ENSG00000176454	LPCAT4	AGPAT7|AYTL3|LPAAT-eta|LPEAT2|LPLAT10	lysophosphatidylcholine acyltransferase 4	protein-coding
131046	chr2	88281751	88282250	+	0	NA	Intergenic	MIR|SINE|MIR	111654	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
35348	chr11	1201901	1202350	+	0	NA	TTS (NM_001304359).2	TTS (NM_001304359).2	-20941	NM_002458	727897		NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
81945	chr16	11809951	11810450	+	0	NA	Intergenic	MER51B|LTR|ERV1	-12942	NM_014153	29066		NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding
8705	chr1	42298221	42299180	+	0	NA	intron (NM_001198850, intron 2 of 12)	L1PB4|LINE|L1	36255	NM_001198851	22887		NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
19791	chr1	182428071	182428230	+	0	NA	Intergenic	L1MEd|LINE|L1	20529	NR_034131	388719		NM_001010899	ENSG00000203729	LINC00272	C1orf120|NCRNA00272	long intergenic non-protein coding RNA 272	ncRNA
142156	chr20	2816451	2817250	+	0	NA	exon (NM_001318207, exon 2 of 2)	exon (NM_001318207, exon 2 of 2)	486	NM_001167670	100288797		NM_001167670	ENSG00000198326	TMEM239	-	transmembrane protein 239	protein-coding
197818	chr6	87731451	87732230	+	0	NA	Intergenic	Intergenic	-29607	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
214991	chr7	152289801	152290000	+	0	NA	intron (NM_170606, intron 6 of 58)	AluSz6|SINE|Alu	146103	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
188532	chr5	155943821	155944080	+	0	NA	Intergenic	L3|LINE|CR1	-383214	NM_000337	6444		NM_000337	ENSG00000170624	SGCD	35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD	sarcoglycan delta	protein-coding
12964	chr1	110886521	110887000	+	0	NA	intron (NM_001040033, intron 2 of 8)	AluSz|SINE|Alu	13612	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
233896	chrX	1597171	1597530	+	0	NA	intron (NM_004043, intron 1 of 9)	intron (NM_004043, intron 1 of 9)	1895	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
13270	chr1	112744351	112744450	+	0	NA	Intergenic	CpG	25495	NR_169586	284467		NM_182759	ENSG00000184599	TAFA3	FAM19A3|TAFA-3	TAFA chemokine like family member 3	protein-coding
137320	chr2	196068171	196069250	+	0	NA	exon (NM_018897, exon 1 of 65)	exon (NM_018897, exon 1 of 65)	127	NM_018897	56171		NM_018897	ENSG00000118997	DNAH7	CILD50	dynein axonemal heavy chain 7	protein-coding
23158	chr1	226730901	226731750	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	7850	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
15683	chr1	150969821	150970530	+	0	NA	intron (NM_181746, intron 1 of 10)	AluJb|SINE|Alu	4660	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
31652	chr10	97405651	97405950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4430	NM_001145114	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
54882	chr12	95796851	95796950	+	0	NA	intron (NR_135014, intron 2 of 2)	intron (NR_135014, intron 2 of 2)	-5745	NM_001329701	59277		NM_021229	ENSG00000074527	NTN4	PRO3091	netrin 4	protein-coding
203108	chr6	166512521	166512850	+	0	NA	intron (NM_021135, intron 3 of 20)	intron (NM_021135, intron 3 of 20)	-3252	NR_031734	100302141		NR_031734	ENSG00000222958	MIR1913	MIRN1913|hsa-mir-1913	microRNA 1913	ncRNA
156938	chr22	42314921	42315700	+	0	NA	Intergenic	Intergenic	-31383	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
96345	chr17	40065171	40065730	+	0	NA	intron (NM_199334, intron 1 of 8)	(TC)n|Simple_repeat|Simple_repeat	2485	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
126161	chr2	26348321	26349250	+	0	NA	intron (NR_137633, intron 1 of 9)	intron (NR_137633, intron 1 of 9)	-1996	NM_153835	165082		NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding
131824	chr2	98637201	98638530	+	0	NA	intron (NM_001160154, intron 9 of 12)	intron (NM_001160154, intron 9 of 12)	25608	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
224694	chr9	21350501	21350800	+	0	NA	exon (NM_021002, exon 1 of 1)	exon (NM_021002, exon 1 of 1)	237	NM_021002	3443		NM_021002	ENSG00000120235	IFNA6	IFN-alphaK	interferon alpha 6	protein-coding
208823	chr7	73666871	73667030	+	0	NA	promoter-TSS (NM_001077621)	promoter-TSS (NM_001077621)	-881	NM_001077621	155382		NM_152560	ENSG00000176428	VPS37D	WBSCR24	VPS37D subunit of ESCRT-I	protein-coding
211246	chr7	102657951	102658330	+	0	NA	intron (NM_001166339, intron 6 of 8).2	intron (NM_001166339, intron 6 of 8).2	7815	NM_001031618	441273		NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1|SPDYB2L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
165530	chr3	100600201	100600550	+	0	NA	Intergenic	L1PB1|LINE|L1	-9226	NM_032787	84873		NM_032787	ENSG00000144820	ADGRG7	GPR128	adhesion G protein-coupled receptor G7	protein-coding
144078	chr20	33709721	33709980	+	0	NA	intron (NM_183397, intron 2 of 2)	intron (NM_183397, intron 2 of 2)	10460	NM_007238	11264		NM_007238	ENSG00000101417	PXMP4	PMP24	peroxisomal membrane protein 4	protein-coding
136056	chr2	172693101	172693300	+	0	NA	Intergenic	Intergenic	-42645	NM_001375872	11069		NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
52592	chr12	56191751	56192050	+	0	NA	Intergenic	Intergenic	-2417	NM_139067	6601		NM_003075	ENSG00000139613	SMARCC2	BAF170|CRACC2|CSS8|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein-coding
23851	chr1	234730721	234732330	+	0	NA	non-coding (NR_038856, exon 3 of 3)	non-coding (NR_038856, exon 3 of 3)	7483	NR_038856	100506810		NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
22331	chr1	214280601	214282200	+	0	NA	exon (NM_020197, exon 1 of 12)	exon (NM_020197, exon 1 of 12)	241	NM_020197	56950		NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
123045	chr19	51273571	51273930	+	0	NA	intron (NR_136526, intron 1 of 2)	AluSz6|SINE|Alu	2484	NR_136526	105372444		NR_136526	ENSG00000268318	LINC01872	-	long intergenic non-protein coding RNA 1872	ncRNA
153389	chr22	24603471	24604580	+	0	NA	intron (NM_001288833, intron 1 of 15)	MER91B|DNA|hAT-Tip100	832	NM_001288833	2678		NM_005265	ENSG00000100031	GGT1	CD224|D22S672|D22S732|GGT|GGT 1|GGTD|GTG	gamma-glutamyltransferase 1	protein-coding
51196	chr12	50507721	50508580	+	0	NA	intron (NM_173602, intron 1 of 37)	intron (NM_173602, intron 1 of 37)	3165	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
77466	chr15	84477471	84477900	+	0	NA	intron (NM_001267536, intron 9 of 10)	intron (NM_001267536, intron 9 of 10)	-24890	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
101525	chr17	67848721	67848980	+	0	NA	intron (NM_182641, intron 1 of 27)	intron (NM_182641, intron 1 of 27)	23347	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
76263	chr15	74065671	74066650	+	0	NA	Intergenic	Intergenic	16390	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
81815	chr16	11554651	11555680	+	0	NA	intron (NM_004862, intron 2 of 3)	AluJr|SINE|Alu	-27918	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
66067	chr14	58426771	58428480	+	0	NA	promoter-TSS (NR_130752)	promoter-TSS (NR_130752)	-11	NM_001304487	26520		NM_012460	ENSG00000100575	TIMM9	TIM9|TIM9A	translocase of inner mitochondrial membrane 9	protein-coding
53577	chr12	67667201	67667800	+	0	NA	Intergenic	L2b|LINE|L2	18755	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
47904	chr12	6749601	6749880	+	0	NA	intron (NM_001382226, intron 7 of 8)	AluSg|SINE|Alu	3176	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
127406	chr2	42097951	42098430	+	0	NA	Intergenic	AluSx1|SINE|Alu	50169	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
212482	chr7	128535251	128535550	+	0	NA	Intergenic	L2b|LINE|L2	58652	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
36540	chr11	6601501	6602030	+	0	NA	intron (NM_015324, intron 2 of 6)	intron (NM_015324, intron 2 of 6)	1851	NM_015324	23378		NM_015324	ENSG00000132275	RRP8	KIAA0409|NML	ribosomal RNA processing 8	protein-coding
135655	chr2	168412901	168413350	+	0	NA	Intergenic	L1PA7|LINE|L1	-43147	NM_203463	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
164742	chr3	69032621	69032880	+	0	NA	intron (NM_001363879, intron 10 of 16)	AluSz|SINE|Alu	16285	NR_036087	100422859		NR_036087	ENSG00000265355	MIR3136	mir-3136	microRNA 3136	ncRNA
160419	chr3	28286701	28287330	+	0	NA	intron (NM_001331189, intron 3 of 4)	intron (NM_001331189, intron 3 of 4)	45396	NM_001331189	152100		NM_182523	ENSG00000187118	CMC1	C3orf68|cmc1p	C-X9-C motif containing 1	protein-coding
52261	chr12	54437901	54438100	+	0	NA	TTS (NR_120488)	TTS (NR_120488)	18215	NR_120488	102724050		NR_120486	ENSG00000258137	GPR84-AS1	-	GPR84, ZNF385A, ITGA5 and GTSF1 antisense RNA 1	ncRNA
202746	chr6	159031451	159031950	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	10653	NM_001278733	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
114141	chr19	11261521	11262700	+	0	NA	intron (NM_020812, intron 1 of 47)	CpG	414	NM_001367830	57572		NM_020812	ENSG00000130158	DOCK6	AOS2|ZIR1	dedicator of cytokinesis 6	protein-coding
103439	chr17	78264101	78264300	+	0	NA	non-coding (NR_073178, exon 6 of 7)	non-coding (NR_073178, exon 6 of 7)	14292	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
233437	chr9	137616021	137616580	+	0	NA	TTS (NM_152285)	TTS (NM_152285)	2229	NR_122036	85026		NM_032937	ENSG00000203993	ARRDC1-AS1	C9orf37	ARRDC1 antisense RNA 1	ncRNA
32236	chr10	101833151	101833550	+	0	NA	intron (NM_173191, intron 1 of 9)	intron (NM_173191, intron 1 of 9)	6521	NM_173194	30819		NM_014591	ENSG00000120049	KCNIP2	KCHIP2	potassium voltage-gated channel interacting protein 2	protein-coding
170842	chr3	190512971	190514400	+	0	NA	promoter-TSS (NM_001364880)	promoter-TSS (NM_001364880)	-400	NM_001364881	3556		NM_002182	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding
135905	chr2	171407251	171407600	+	0	NA	intron (NM_024770, intron 1 of 9)	intron (NM_024770, intron 1 of 9)	26565	NM_001321155	79828		NM_024770	ENSG00000123600	METTL8	TIP	methyltransferase 8, tRNA N3-cytidine	protein-coding
224793	chr9	22176021	22176280	+	0	NA	Intergenic	Intergenic	-166837	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
67114	chr14	68434221	68434480	+	0	NA	intron (NM_133509, intron 9 of 10)	L1PA5|LINE|L1	194437	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
84555	chr16	30571271	30572650	+	0	NA	5' UTR (NM_145271, exon 1 of 3)	5' UTR (NM_145271, exon 1 of 3)	447	NM_145271	146542		NM_145271	ENSG00000229809	ZNF688	-	zinc finger protein 688	protein-coding
143203	chr20	24952301	24953200	+	0	NA	intron (NM_003650, intron 1 of 3)	intron (NM_003650, intron 1 of 3)	3481	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
33291	chr10	114634151	114634350	+	0	NA	intron (NM_001322884, intron 1 of 20)	AluY|SINE|Alu	-1853	NM_001352440	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
231849	chr9	132804221	132805000	+	0	NA	intron (NM_001371771, intron 10 of 12)	(CTCTCC)n|Simple_repeat|Simple_repeat	73674	NM_001317958	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
101847	chr17	74176701	74177150	+	0	NA	Intergenic	Intergenic	-26753	NM_000999	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
162688	chr3	48941251	48941350	+	0	NA	intron (NM_001349214, intron 3 of 15)	intron (NM_001349214, intron 3 of 15)	-21915	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
93392	chr17	18317471	18318250	+	0	NA	exon (NM_144775, exon 1 of 2)	exon (NM_144775, exon 1 of 2)	2567	NM_144775	140775		NM_144775	ENSG00000176994	SMCR8	DENND8A	SMCR8-C9orf72 complex subunit	protein-coding
195501	chr6	37177251	37177780	+	0	NA	Intergenic	Intergenic	7363	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
116555	chr19	18225571	18225730	+	0	NA	intron (NM_001330172, intron 2 of 15)	CpG	788	NM_001098818	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
92668	chr17	10792171	10792330	+	0	NA	intron (NR_073458, intron 1 of 3)	intron (NR_073458, intron 1 of 3)	11849	NR_036581								
1560	chr1	3495751	3496400	+	0	NA	intron (NM_001409, intron 29 of 36)	intron (NM_001409, intron 29 of 36)	41410	NM_014448	27237		NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding
118346	chr19	35637471	35637830	+	0	NA	TTS (NM_001319113)	TTS (NM_001319113)	-4095	NM_001300974	2116		NM_014209	ENSG00000105672	ETV2	ER71|ETSRP71	ETS variant transcription factor 2	protein-coding
43679	chr11	85809071	85809560	+	0	NA	intron (NM_032943, intron 1 of 18)	intron (NM_032943, intron 1 of 18)	1826	NM_001365827	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
213299	chr7	135145271	135145630	+	0	NA	intron (NM_001305630, intron 2 of 2)	HAL1|LINE|L1	-2622	NM_018295	55281		NM_018295	ENSG00000146859	TMEM140	-	transmembrane protein 140	protein-coding
39110	chr11	48056851	48056950	+	0	NA	intron (NM_002843, intron 1 of 24)	AluSq2|SINE|Alu	-39882	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
179700	chr4	190120271	190121030	+	0	NA	Intergenic	TAR1|Satellite|telo	-53124	NM_001293798	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
176503	chr4	94216251	94216550	+	0	NA	intron (NR_164732, intron 4 of 24)	intron (NR_164732, intron 4 of 24)	8316	NR_045644	56916		NM_020159	ENSG00000163104	SMARCAD1	ADERM|BASNS|ETL1|HEL1|HRZ|TYS	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding
12328	chr1	101005911	101006200	+	0	NA	intron (NM_015958, intron 4 of 7)	THE1C|LTR|ERVL-MaLR	19729	NM_001077395	51611		NM_015958	ENSG00000117543	DPH5	AD-018|CGI-30|HSPC143|NEDSFF|NPD015	diphthamide biosynthesis 5	protein-coding
44040	chr11	95152971	95153750	+	0	NA	intron (NR_110303, intron 1 of 2)	MIRc|SINE|MIR	2821	NR_110303	101929295		NR_110303	ENSG00000245552	LNCRNA-IUR	-	lncRNA imatinib upregulated	ncRNA
162415	chr3	48273621	48274030	+	0	NA	Intergenic	HERVIP10F-int|LTR|ERV1	17853	NR_134638	101060195		NR_134638		FCF1P2	-	FCF1 pseudogene 2	pseudo
59943	chr13	31161501	31163530	+	0	NA	promoter-TSS (NM_001286505)	promoter-TSS (NM_001286505)	-127	NM_001286504	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
80247	chr16	2208151	2208700	+	0	NA	TTS (NM_182563)	TTS (NM_182563)	2643	NM_182563	283870		NM_182563	ENSG00000182685	BRICD5	C16orf79	BRICHOS domain containing 5	protein-coding
185021	chr5	115531771	115532630	+	0	NA	intron (NM_020177, intron 2 of 2)	intron (NM_020177, intron 2 of 2)	12575	NM_020177	56929		NM_020177	ENSG00000145780	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog C	protein-coding
157423	chr22	45160571	45160930	+	0	NA	intron (NR_038956, intron 1 of 2)	MER41C|LTR|ERV1	3031	NR_038956	100506714		NR_038956	ENSG00000226328	NUP50-DT	NUP50-AS1	NUP50 divergent transcript	ncRNA
48561	chr12	10245171	10245530	+	0	NA	intron (NM_001351060, intron 2 of 8)	AluSx|SINE|Alu	6389	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
129860	chr2	72973551	72973930	+	0	NA	intron (NM_001330412, intron 10 of 13)	intron (NM_001330412, intron 10 of 13)	56221	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
14913	chr1	147242391	147243600	+	0	NA	promoter-TSS (NM_001348452)	promoter-TSS (NM_001348452)	-147	NM_001348452	9557		NM_004284	ENSG00000131778	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1 like	protein-coding
89138	chr16	88514271	88514830	+	0	NA	intron (NM_153813, intron 4 of 9)	L2c|LINE|L2	16503	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
88264	chr16	82883101	82883300	+	0	NA	intron (NM_001220490, intron 2 of 12)	intron (NM_001220490, intron 2 of 12)	107098	NR_110937	101928417		NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
233868	chrX	1538651	1539100	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1690	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
30155	chr10	74178451	74178750	+	0	NA	intron (NM_001369124, intron 1 of 9)	intron (NM_001369124, intron 1 of 9)	1837	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
23396	chr1	228211101	228212000	+	0	NA	intron (NR_073154, intron 2 of 3)	intron (NR_073154, intron 2 of 3)	2105	NR_073155	574407		NM_001025495	ENSG00000162913	OBSCN-AS1	C1orf145	OBSCN antisense RNA 1	ncRNA
156074	chr22	40038471	40038830	+	0	NA	3' UTR (NM_138435, exon 5 of 5)	3' UTR (NM_138435, exon 5 of 5)	5880	NR_163486	114841040		NR_163486	ENSG00000261202	TNRC6B-DT	-	TNRC6B divergent transcript	ncRNA
137577	chr2	197265021	197265530	+	0	NA	intron (NR_046837, intron 5 of 5)	AluSz|SINE|Alu	37244	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
207579	chr7	44952301	44952500	+	0	NA	Intergenic	AluSp|SINE|Alu	26615	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
33562	chr10	119341201	119341630	+	0	NA	intron (NM_005308, intron 2 of 15)	L2b|LINE|L2	-36557	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
5687	chr1	26358471	26359550	+	0	NA	Intergenic	MIR|SINE|MIR	-4880	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
63951	chr14	22104951	22105300	+	0	NA	Intergenic	Intergenic	327628	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
72756	chr15	39627121	39627500	+	0	NA	intron (NM_001324338, intron 10 of 11)	intron (NM_001324338, intron 10 of 11)	46231	NM_003246	7057		NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding
75698	chr15	67882471	67882630	+	0	NA	Intergenic	Intergenic	-42505	NR_104080	101954271		NR_104080	ENSG00000207507	RNU6-9	U6-9	RNA, U6 small nuclear 9	snRNA
110176	chr19	1663851	1663950	+	0	NA	Intergenic	Intergenic	-11285	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
16311	chr1	154181621	154182600	+	0	NA	intron (NM_001364680, intron 2 of 8)	intron (NM_001364680, intron 2 of 8)	1108	NM_001278188	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
153083	chr22	23384101	23384300	+	0	NA	Intergenic	Intergenic	-2074	NR_037839	649264		NR_037839		CES5AP1	-	carboxylesterase 5A pseudogene 1	pseudo
144934	chr20	37012501	37012950	+	0	NA	intron (NM_183404, intron 19 of 20)	SVA_D|Retroposon|SVA	-61017	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
40940	chr11	65311301	65311700	+	0	NA	Intergenic	Intergenic	-3366	NM_006779	10435		NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding
27645	chr10	32972701	32973100	+	0	NA	Intergenic	Intergenic	-14670	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
172318	chr4	1628901	1629680	+	0	NA	Intergenic	Intergenic	54701	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
210670	chr7	100537621	100537880	+	0	NA	Intergenic	AluY|SINE|Alu	-1453	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
92377	chr17	8225991	8227600	+	0	NA	non-coding (NR_046431, exon 22 of 22)	non-coding (NR_046431, exon 22 of 22)	-2752	NR_026951	284029		NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324|RNA00324|TP53LC03	long intergenic non-protein coding RNA 324	ncRNA
158732	chr3	8769301	8769630	+	0	NA	promoter-TSS (NM_001354656)	promoter-TSS (NM_001354656)	149	NM_001354654	5021		NM_000916	ENSG00000180914	OXTR	OT-R|OTR	oxytocin receptor	protein-coding
51358	chr12	51766371	51766530	+	0	NA	intron (NM_001330260, intron 16 of 26)	MER20|DNA|hAT-Charlie	65467	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
89831	chr16	89581271	89581830	+	0	NA	intron (NM_014427, intron 3 of 16)	intron (NM_014427, intron 3 of 16)	5792	NM_153636	27132		NM_014427	ENSG00000178773	CPNE7	-	copine 7	protein-coding
48292	chr12	8953871	8955230	+	0	NA	intron (NR_137427, intron 1 of 2)	L1MC4|LINE|L1	4506	NM_001329103	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
105151	chr17	82250151	82250680	+	0	NA	intron (NM_139062, intron 6 of 9)	CpG	13747	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
10013	chr1	55212051	55212150	+	0	NA	intron (NM_015306, intron 1 of 67)	MIR3|SINE|MIR	3264	NM_015306	23358		NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding
72276	chr15	30823451	30824550	+	0	NA	intron (NR_072991, intron 3 of 4)	AluY|SINE|Alu	5964	NR_072991	390561		NR_072991		HERC2P10	-	HERC2 pseudogene 10	pseudo
56081	chr12	110643151	110643450	+	0	NA	intron (NM_001082538, intron 11 of 14)	intron (NM_001082538, intron 11 of 14)	29171	NM_001082537	79600		NM_024549	ENSG00000204852	TCTN1	JBTS13|TECT1	tectonic family member 1	protein-coding
209302	chr7	75997101	75997500	+	0	NA	intron (NR_134487, intron 6 of 6)	AluSx|SINE|Alu	-2705	NM_031925	83862		NM_031925	ENSG00000189077	TMEM120A	NET29|TACAN|TMPIT	transmembrane protein 120A	protein-coding
43400	chr11	77145321	77145780	+	0	NA	intron (NM_001369365, intron 4 of 49)	intron (NM_001369365, intron 4 of 49)	17304	NM_001127180	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
132777	chr2	109859621	109860200	+	0	NA	Intergenic	Intergenic	-38522	NR_027145	100271835		NR_027144	ENSG00000284337	LIMS3-LOC440895	-	LIMS3-LOC440895 readthrough	ncRNA
202779	chr6	159075501	159075800	+	0	NA	Intergenic	Intergenic	-30498	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
11344	chr1	89603771	89603930	+	0	NA	Intergenic	Intergenic	29044	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
77280	chr15	82046801	82048000	+	0	NA	Intergenic	CpG-8510	-1382	NM_032246	84206		NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding
43168	chr11	75350571	75351200	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	776	NM_004041	408		NM_004041	ENSG00000137486	ARRB1	ARB1|ARR1	arrestin beta 1	protein-coding
50383	chr12	47235871	47236230	+	0	NA	exon (NM_001281429, exon 3 of 3)	exon (NM_001281429, exon 3 of 3)	-19607	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
92179	chr17	7716271	7716430	+	0	NA	Intergenic	Intergenic	-1394	NM_020877	146754		NM_020877	ENSG00000183914	DNAH2	DNAHC2|DNHD3|SPGF45	dynein axonemal heavy chain 2	protein-coding
138021	chr2	201279051	201279630	+	0	NA	intron (NR_111983, intron 7 of 8)	HAL1|LINE|L1	18804	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
199765	chr6	125889321	125889580	+	0	NA	exon (NM_001122842, exon 9 of 16)	exon (NM_001122842, exon 9 of 16)	-29805	NM_001199622	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
125617	chr2	19346601	19346850	+	0	NA	Intergenic	AluJb|SINE|Alu	-1704	NR_039914	100616307		NR_039914	ENSG00000266738	MIR4757	-	microRNA 4757	ncRNA
57471	chr12	122027851	122028250	+	0	NA	intron (NM_020993, intron 1 of 5)	intron (NM_020993, intron 1 of 5)	6166	NM_001024808	605		NM_020993	ENSG00000110987	BCL7A	BCL7|SMARCJ1	BAF chromatin remodeling complex subunit BCL7A	protein-coding
212995	chr7	130995301	130996230	+	0	NA	intron (NR_109855, intron 2 of 4)	MamTip2|DNA|hAT-Tip100	82301	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
62287	chr13	98930221	98930480	+	0	NA	intron (NM_001318849, intron 2 of 54)	intron (NM_001318849, intron 2 of 54)	47714	NM_001366683	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
72083	chr15	28909551	28909850	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	-11937	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
226309	chr9	68904601	68904800	+	0	NA	intron (NM_001278253, intron 7 of 13)	intron (NM_001278253, intron 7 of 13)	71141	NR_110647	101927069		NR_110647		LOC101927069	-	uncharacterized LOC101927069	ncRNA
43861	chr11	88305121	88305780	+	0	NA	intron (NM_001814, intron 4 of 6)	intron (NM_001814, intron 4 of 6)	32286	NM_001814	1075		NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding
44611	chr11	108624551	108624850	+	0	NA	Intergenic	Intergenic	-30932	NM_001308019	23086		NM_015065	ENSG00000110723	EXPH5	EBS4|SLAC2-B|SLAC2B	exophilin 5	protein-coding
55857	chr12	109264121	109264380	+	0	NA	exon (NM_001093, exon 50 of 53)	exon (NM_001093, exon 50 of 53)	45034	NM_213596	121643		NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding
118073	chr19	34351361	34352480	+	0	NA	intron (NM_014686, intron 13 of 13)	AluJr4|SINE|Alu	-12820	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
169585	chr3	170865501	170866100	+	0	NA	non-coding (NR_135259, exon 4 of 4)	non-coding (NR_135259, exon 4 of 4)	4395	NR_135259	200916		NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22 like 1	protein-coding
210124	chr7	98200421	98200880	+	0	NA	intron (NM_014916, intron 11 of 13)	MER2|DNA|TcMar-Tigger	-10789	NM_177455	168620		NM_177455	ENSG00000180535	BHLHA15	BHLHB8|MIST1	basic helix-loop-helix family member a15	protein-coding
68689	chr14	90399411	90400300	+	0	NA	intron (NM_001363670, intron 1 of 5)	intron (NM_001363670, intron 1 of 5)	1605	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
116632	chr19	18302551	18302730	+	0	NA	Intergenic	Intergenic	20436	NM_001252129	25804		NM_012321	ENSG00000130520	LSM4	GRP|YER112W	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
39451	chr11	60952101	60953000	+	0	NA	promoter-TSS (NR_027391)	promoter-TSS (NR_027391)	-374	NR_027391	51296		NM_016582	ENSG00000110446	SLC15A3	OCTP|PHT2|PTR3|hPHT2	solute carrier family 15 member 3	protein-coding
63248	chr13	113941451	113942030	+	0	NA	Intergenic	Intergenic	-12749	NR_047495	100861555		NR_047495		SWINGN	LINC00565	SWI/SNF complex interacting GAS6 enhancer non-coding RNA	ncRNA
6806	chr1	30907221	30907780	+	0	NA	intron (NM_014654, intron 1 of 4)	intron (NM_014654, intron 1 of 4)	1258	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
70522	chr14	102322121	102322380	+	0	NA	non-coding (NR_169567, exon 3 of 10)	non-coding (NR_169567, exon 3 of 10)	2504	NR_169567	55778		NM_018335	ENSG00000022976	ZNF839	C14orf131	zinc finger protein 839	protein-coding
197668	chr6	85461151	85462150	+	0	NA	intron (NM_002526, intron 1 of 8)	intron (NM_002526, intron 1 of 8)	11567	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
211279	chr7	102874051	102874380	+	0	NA	intron (NM_001111038, intron 16 of 18)	intron (NM_001111038, intron 16 of 18)	-38785	NM_001031692	10234		NM_005824	ENSG00000128606	LRRC17	P37NB	leucine rich repeat containing 17	protein-coding
49380	chr12	22414521	22414980	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-80036	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
101341	chr17	66829601	66830230	+	0	NA	Intergenic	Intergenic	-5202	NM_001371476	27091		NM_014404	ENSG00000075429	CACNG5	-	calcium voltage-gated channel auxiliary subunit gamma 5	protein-coding
125789	chr2	23916621	23917180	+	0	NA	intron (NM_001354107, intron 1 of 28)	L2c|LINE|L2	10223	NR_125717	54454		NM_017552	ENSG00000119778	ATAD2B	-	ATPase family AAA domain containing 2B	protein-coding
38862	chr11	47339671	47340230	+	0	NA	intron (NM_000256, intron 19 of 33)	L1ME2|LINE|L1	12752	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
31725	chr10	97688971	97689200	+	0	NA	Intergenic	AluSx|SINE|Alu	-1844	NM_021732	60370		NM_021732	ENSG00000119986	AVPI1	PP5395|VIP32|VIT32	arginine vasopressin induced 1	protein-coding
112145	chr19	5616721	5616980	+	0	NA	intron (NM_014649, intron 2 of 20)	AluSx4|SINE|Alu	5926	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
25571	chr10	7786451	7786550	+	0	NA	intron (NM_012311, intron 1 of 12)	MLT1A|LTR|ERVL-MaLR	1493	NR_045609	22944		NM_012311	ENSG00000151657	KIN	BTCD|KIN17|Rts2	Kin17 DNA and RNA binding protein	protein-coding
21579	chr1	206477501	206477700	+	0	NA	intron (NM_001193322, intron 7 of 20)	intron (NM_001193322, intron 7 of 20)	2797	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
183636	chr5	80239071	80239630	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	16698	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
227122	chr9	86074921	86075580	+	0	NA	intron (NM_016548, intron 3 of 9)	MLT1A0|LTR|ERVL-MaLR	24308	NM_016548	51280		NM_016548	ENSG00000135052	GOLM1	C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3	golgi membrane protein 1	protein-coding
122927	chr19	50667371	50667530	+	0	NA	exon (NM_016148, exon 23 of 24)	exon (NM_016148, exon 23 of 24)	18005	NM_001195076	342918		NM_001195076	ENSG00000235034	C19orf81	-	chromosome 19 open reading frame 81	protein-coding
148429	chr20	63965421	63966080	+	0	NA	intron (NM_020713, intron 5 of 16)	intron (NM_020713, intron 5 of 16)	4180	NM_020713	57473		NM_020713	ENSG00000196700	ZNF512B	GM632	zinc finger protein 512B	protein-coding
99334	chr17	49847521	49848730	+	0	NA	promoter-TSS (NM_001077504)	promoter-TSS (NM_001077504)	-108	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
130478	chr2	85554751	85554850	+	0	NA	intron (NM_000821, intron 6 of 14)	intron (NM_000821, intron 6 of 14)	6693	NM_001311312	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
182423	chr5	61409871	61410330	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	77842	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
197696	chr6	85665801	85666000	+	0	NA	Intergenic	AluSq|SINE|Alu	11468	NR_002743	26799		NR_002743		SNORD50A	RNU50|U50	small nucleolar RNA, C/D box 50A	snoRNA
227297	chr9	89410641	89411200	+	0	NA	intron (NM_001371201, intron 2 of 18)	HAL1|LINE|L1	68970	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
109903	chr19	1282221	1283530	+	0	NA	Intergenic	Intergenic	-2998	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
23026	chr1	226406351	226407000	+	0	NA	intron (NM_001618, intron 1 of 22)	intron (NM_001618, intron 1 of 22)	1418	NM_001618	142		NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PARS|PPOL|Poly-PARP|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding
135532	chr2	162308851	162309430	+	0	NA	intron (NM_022168, intron 2 of 15)	MLT1B-int|LTR|ERVL-MaLR	9544	NM_022168	64135		NM_022168	ENSG00000115267	IFIH1	AGS7|Hlcd|IDDM19|IMD95|MDA-5|MDA5|RLR-2|SGMRT1	interferon induced with helicase C domain 1	protein-coding
95537	chr17	36600971	36602410	+	0	NA	TTS (NM_024308)	TTS (NM_024308)	107	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
164411	chr3	58531901	58532100	+	0	NA	intron (NM_003500, intron 5 of 14)	intron (NM_003500, intron 5 of 14)	5190	NM_003500	8309		NM_003500	ENSG00000168306	ACOX2	BCOX|BRCACOX|BRCOX|CBAS6|THCCox	acyl-CoA oxidase 2	protein-coding
237453	chrX	119694801	119695500	+	0	NA	Intergenic	Intergenic	-1982	NM_145800	23157		NM_015129	ENSG00000125354	SEPTIN6	SEP2|SEPT2|SEPT6|Septin-6	septin 6	protein-coding
221486	chr8	124492001	124492200	+	0	NA	intron (NM_032026, intron 11 of 11)	AluSq2|SINE|Alu	16476	NR_106903	102466200		NR_106903	ENSG00000284087	MIR6844	hsa-mir-6844	microRNA 6844	ncRNA
41989	chr11	67384101	67384530	+	0	NA	intron (NR_024469, intron 2 of 3)	AluSz|SINE|Alu	-7671	NM_004584	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
31917	chr10	100508521	100509650	+	0	NA	exon (NM_015490, exon 5 of 26)	exon (NM_015490, exon 5 of 26)	10776	NM_015490	25956		NM_015490	ENSG00000075826	SEC31B	SEC31B-1|SEC31L2	SEC31 homolog B, COPII coat complex component	protein-coding
45981	chr11	121473901	121474100	+	0	NA	intron (NR_169501, intron 5 of 5)	intron (NR_169501, intron 5 of 5)	7789	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
110149	chr19	1618051	1618950	+	0	NA	intron (NM_003200, intron 16 of 18)	L2a|LINE|L2	-13038	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
5030	chr1	24508551	24509550	+	0	NA	intron (NM_001251978, intron 1 of 4)	AluJb|SINE|Alu	1456	NM_001251978	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
3149	chr1	12566021	12566300	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	12863	NR_106788	102466722		NR_106788	ENSG00000276830	MIR6730	hsa-mir-6730	microRNA 6730	ncRNA
144162	chr20	34063001	34063230	+	0	NA	intron (NM_016732, intron 2 of 9)	MIR|SINE|MIR	13996	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
109653	chr19	1008371	1008830	+	0	NA	intron (NM_138690, intron 6 of 8)	CpG-12969	8181	NM_138690	116444		NM_138690	ENSG00000116032	GRIN3B	GluN3B|NR3B	glutamate ionotropic receptor NMDA type subunit 3B	protein-coding
7200	chr1	32281621	32281880	+	0	NA	intron (NM_001042771, intron 12 of 12)	intron (NM_001042771, intron 12 of 12)	7639	NM_001042771	3932		NM_005356	ENSG00000182866	LCK	IMD22|LSK|YT16|p56lck|pp58lck	LCK proto-oncogene, Src family tyrosine kinase	protein-coding
28551	chr10	50604901	50606030	+	0	NA	intron (NM_147156, intron 1 of 10)	intron (NM_147156, intron 1 of 10)	18491	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
167322	chr3	128735171	128736000	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	9402	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
140754	chr2	234490121	234490580	+	0	NA	Intergenic	Intergenic	6699	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
25620	chr10	8076221	8076580	+	0	NA	Intergenic	AluSx1|SINE|Alu	21712	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
195386	chr6	36743901	36744500	+	0	NA	exon (NM_001376894, exon 8 of 10)	exon (NM_001376894, exon 8 of 10)	13200	NM_001376891	57699		NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding
207546	chr7	44840051	44840350	+	0	NA	intron (NM_201517, intron 2 of 3)	AluJr|SINE|Alu	7887	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
150012	chr21	37119501	37119900	+	0	NA	intron (NM_001001894, intron 11 of 45)	L1MEc|LINE|L1	36753	NM_003316	7267		NM_003316	ENSG00000182670	TTC3	DCRR1|RNF105|TPRDIII	tetratricopeptide repeat domain 3	protein-coding
228416	chr9	99253521	99254180	+	0	NA	Intergenic	Intergenic	31568	NM_006808	10952		NM_006808	ENSG00000106803	SEC61B	-	SEC61 translocon subunit beta	protein-coding
110092	chr19	1525021	1525480	+	0	NA	intron (NM_001243079, intron 1 of 13)	CpG	1173	NM_001243079	126520		NM_001011716	ENSG00000185988	PLK5	PLK-5|PLK5P|SgK384ps	polo like kinase 5 (inactive)	protein-coding
41238	chr11	65779351	65780400	+	0	NA	exon (NM_138368, exon 2 of 2)	exon (NM_138368, exon 2 of 2)	1101	NM_138368	91056		NM_138368	ENSG00000254470	AP5B1	AP-5|PP1030	adaptor related protein complex 5 subunit beta 1	protein-coding
183114	chr5	74655001	74655400	+	0	NA	intron (NM_001292004, intron 1 of 13)	intron (NM_001292004, intron 1 of 13)	-13776	NM_001256575	8507		NM_003633	ENSG00000171617	ENC1	CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10	ectodermal-neural cortex 1	protein-coding
93022	chr17	17244271	17244630	+	0	NA	Intergenic	Intergenic	-7282	NM_144606	201163		NM_144606	ENSG00000154803	FLCN	BHD|DENND8B|FLCL	folliculin	protein-coding
219512	chr8	73990921	73992650	+	0	NA	intron (NM_001195797, intron 1 of 3)	intron (NM_001195797, intron 1 of 3)	393	NM_015364	23643		NM_015364	ENSG00000154589	LY96	ESOP-1|MD-2|MD2|ly-96	lymphocyte antigen 96	protein-coding
162293	chr3	47409521	47410100	+	0	NA	exon (NM_015466, exon 19 of 25)	exon (NM_015466, exon 19 of 25)	28789	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
99653	chr17	50704471	50704630	+	0	NA	intron (NM_052855, intron 1 of 4)	intron (NM_052855, intron 1 of 4)	3364	NM_052855	91369		NM_052855	ENSG00000154945	ANKRD40	-	ankyrin repeat domain 40	protein-coding
199839	chr6	127753851	127754150	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L1MA10|LINE|L1	101188	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
140903	chr2	237689421	237690180	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-2364	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
13750	chr1	116962521	116963380	+	0	NA	intron (NM_020440, intron 5 of 8)	L2a|LINE|L2	-38800	NM_001256111	9398		NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
200775	chr6	137869801	137870200	+	0	NA	intron (NM_001270508, intron 1 of 8)	intron (NM_001270508, intron 1 of 8)	-1767	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
117225	chr19	19417121	19417380	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	11575	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
188655	chr5	157243801	157244650	+	0	NA	intron (NM_005546, intron 12 of 16)	intron (NM_005546, intron 12 of 16)	-21898	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
181458	chr5	41893471	41893730	+	0	NA	Intergenic	L1MB7|LINE|L1	-10744	NM_175921	285636		NM_175921	ENSG00000205765	RIMOC1	C5orf51	RAB7A interacting MON1-CCZ1 complex subunit 1	protein-coding
24608	chr1	246498571	246498930	+	0	NA	intron (NM_001167740, intron 1 of 11)	AluY|SINE|Alu	8529	NM_001375962	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
45792	chr11	119318501	119319200	+	0	NA	Intergenic	Intergenic	-1720	NM_006500	4162		NM_006500	ENSG00000076706	MCAM	CD146|HEMCAM|METCAM|MUC18|MelCAM	melanoma cell adhesion molecule	protein-coding
58877	chr13	18252971	18253200	+	0	NA	Intergenic	Intergenic	57788	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
67535	chr14	71023071	71023230	+	0	NA	intron (NM_014982, intron 12 of 35)	intron (NM_014982, intron 12 of 35)	115691	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
118379	chr19	35724071	35724430	+	0	NA	intron (NM_014727, intron 8 of 36)	AluJo|SINE|Alu	6247	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
208241	chr7	65475371	65476050	+	0	NA	Intergenic	Intergenic	79355	NR_157837	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
134740	chr2	144599601	144600430	+	0	NA	Intergenic	Intergenic	-67952	NR_033870	401014		NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41	ncRNA
222242	chr8	133155921	133156180	+	0	NA	Intergenic	AluSp|SINE|Alu	-34989	NM_001204869	8840		NM_003882	ENSG00000104415	CCN4	WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc	cellular communication network factor 4	protein-coding
164597	chr3	66224271	66224530	+	0	NA	intron (NM_001164796, intron 1 of 8).2	THE1B|LTR|ERVL-MaLR	3397	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
12098	chr1	100024421	100024680	+	0	NA	3' UTR (NM_012243, exon 8 of 8)	3' UTR (NM_012243, exon 8 of 8)	-13545	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
127094	chr2	37614021	37614700	+	0	NA	Intergenic	Intergenic	57282	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
140653	chr2	233852071	233852580	+	0	NA	intron (NM_018410, intron 3 of 8)	intron (NM_018410, intron 3 of 8)	2210	NM_018410	55355		NM_018410	ENSG00000123485	HJURP	FAKTS|URLC9|hFLEG1	Holliday junction recognition protein	protein-coding
210999	chr7	102285951	102287300	+	0	NA	promoter-TSS (NM_001359230)	promoter-TSS (NM_001359230)	-243	NM_001359230	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
120888	chr19	45583951	45585330	+	0	NA	exon (NM_001017989, exon 1 of 2)	exon (NM_001017989, exon 1 of 2)	162	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
226003	chr9	41353351	41353450	+	0	NA	Intergenic	GSATII|Satellite|centr	-5462	NR_148348	107984035		NR_148348		LOC107984035	-	uncharacterized LOC107984035	ncRNA
166109	chr3	111067251	111067550	+	0	NA	intron (NR_045114, intron 2 of 3)	AluSz6|SINE|Alu	2559	NR_045114	100506555		NR_045114		NECTIN3-AS1	PVRL3-AS1	NECTIN3 antisense RNA 1	ncRNA
141556	chr2	241505321	241505980	+	0	NA	intron (NM_001282305, intron 1 of 10)	intron (NM_001282305, intron 1 of 10)	2695	NM_001271978	10494		NM_006374	ENSG00000115694	STK25	SOK1|YSK1	serine/threonine kinase 25	protein-coding
85764	chr16	56869551	56870150	+	0	NA	intron (NM_001126107, intron 4 of 25)	intron (NM_001126107, intron 4 of 25)	4643	NM_001126108	6559		NM_000339	ENSG00000070915	SLC12A3	NCC|NCCT|TSC	solute carrier family 12 member 3	protein-coding
109754	chr19	1116251	1116450	+	0	NA	intron (NM_001100122, intron 13 of 28).2	intron (NM_001100122, intron 13 of 28).2	11700	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
188905	chr5	160117401	160117600	+	0	NA	5' UTR (NM_001349732, exon 2 of 4)	5' UTR (NM_001349732, exon 2 of 4)	1950	NR_146216	114825		NM_052927	ENSG00000170234	PWWP2A	MST101	PWWP domain containing 2A	protein-coding
197940	chr6	89859601	89860000	+	0	NA	intron (NM_012115, intron 6 of 9)	AluSz|SINE|Alu	29920	NM_012115	9994		NM_012115	ENSG00000118412	CASP8AP2	CED-4|FLASH|RIP25	caspase 8 associated protein 2	protein-coding
231876	chr9	132989601	132990450	+	0	NA	intron (NM_001377304, intron 6 of 6)	intron (NM_001377304, intron 6 of 6)	10749	NM_001377305	8328		NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding
171434	chr3	196275771	196275930	+	0	NA	intron (NM_001312673, intron 1 of 8)	AluYj4|SINE|Alu	11876	NM_001312673	5130		NM_005017	ENSG00000161217	PCYT1A	CCTA|CCTalpha|CGL5|CT|CTA|CTPCT|PCYT1|SMDCRD	phosphate cytidylyltransferase 1A, choline	protein-coding
29205	chr10	68985351	68986500	+	0	NA	TTS (NM_001256910)	TTS (NM_001256910)	-2878	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
217486	chr8	29026051	29026350	+	0	NA	intron (NM_001324391, intron 6 of 10)	intron (NM_001324391, intron 6 of 10)	134886	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
92867	chr17	16386421	16387480	+	0	NA	Intergenic	CpG	5485	NM_001281717	7314		NM_018955	ENSG00000170315	UBB	HEL-S-50	ubiquitin B	protein-coding
83008	chr16	22198901	22199180	+	0	NA	Intergenic	Intergenic	-7238	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
152061	chr22	19719671	19719830	+	0	NA	intron (NR_037612, intron 2 of 11)	CpG-18755	1281	NR_037612	100526833		NR_037611	ENSG00000284874	SEPT5-GP1BB	GP1BB|GPIb-beta|GPIbB	SEPT5-GP1BB readthrough	ncRNA
153632	chr22	28768301	28768500	+	0	NA	Intergenic	AluJr4|SINE|Alu	-4274	NM_001284263	150275		NM_173510	ENSG00000159873	CCDC117	dJ366L4.1	coiled-coil domain containing 117	protein-coding
200466	chr6	135142301	135142500	+	0	NA	Intergenic	Intergenic	-38908	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
53120	chr12	57824001	57824200	+	0	NA	TTS (NR_029847)	TTS (NR_029847)	592	NR_029847	407016		NR_029847	ENSG00000207789	MIR26A2	MIRN26A2|mir-26a-2	microRNA 26a-2	ncRNA
182231	chr5	56908371	56908530	+	0	NA	promoter-TSS (NR_136556)	promoter-TSS (NR_136556)	-810	NM_001323022	133383		NM_153706	ENSG00000155542	SETD9	C5orf35	SET domain containing 9	protein-coding
169053	chr3	153174001	153174430	+	0	NA	Intergenic	(TCCCC)n|Simple_repeat|Simple_repeat	11989	NM_002886	5912		NM_002886	ENSG00000181467	RAP2B	-	RAP2B, member of RAS oncogene family	protein-coding
135736	chr2	169470021	169470900	+	0	NA	Intergenic	L1MA10|LINE|L1	-9034	NM_152384	129880		NM_152384	ENSG00000163093	BBS5	-	Bardet-Biedl syndrome 5	protein-coding
229159	chr9	114497101	114498000	+	0	NA	intron (NM_015404, intron 1 of 11)	A-rich|Low_complexity|Low_complexity	5665	NM_001083885	25861		NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding
122402	chr19	49436201	49436830	+	0	NA	intron (NM_020309, intron 2 of 11)	CpG	5012	NM_020309	57030		NM_020309	ENSG00000104888	SLC17A7	BNPI|VGLUT1	solute carrier family 17 member 7	protein-coding
108401	chr18	69895251	69896980	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	51758	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
110238	chr19	1776201	1776600	+	0	NA	3' UTR (NM_001080488, exon 2 of 2)	3' UTR (NM_001080488, exon 2 of 2)	22894	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
194244	chr6	32462671	32462830	+	0	NA	Intergenic	Intergenic	22863	NM_019111	3122		NM_019111	ENSG00000204287	HLA-DRA	HLA-DRA1	major histocompatibility complex, class II, DR alpha	protein-coding
188360	chr5	151757921	151759650	+	0	NA	promoter-TSS (NM_004045)	promoter-TSS (NM_004045)	-154	NM_004045	475		NM_004045	ENSG00000177556	ATOX1	ATX1|HAH1	antioxidant 1 copper chaperone	protein-coding
211297	chr7	103279821	103281180	+	0	NA	promoter-TSS (NR_003561)	promoter-TSS (NR_003561)	-34	NR_027768	349152		NM_182634	ENSG00000291139	DPY19L2P2	-	DPY19L2 pseudogene 2	pseudo
206152	chr7	27898721	27898980	+	0	NA	intron (NM_175061, intron 2 of 4)	intron (NM_175061, intron 2 of 4)	158755	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
186929	chr5	139634471	139634630	+	0	NA	Intergenic	Intergenic	-12749	NM_001317201	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
165362	chr3	90689351	90689650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1581879	NM_005233	2042		NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
168125	chr3	138836351	138836700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1597	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
175578	chr4	75656821	75657080	+	0	NA	exon (NM_203504, exon 5 of 11)	exon (NM_203504, exon 5 of 11)	16209	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
29929	chr10	73365471	73366030	+	0	NA	Intergenic	L1MA6|LINE|L1	-6886	NM_001367801	118491		NM_145170	ENSG00000156042	CFAP70	SPGF41|TTC18	cilia and flagella associated protein 70	protein-coding
148204	chr20	63564021	63564300	+	0	NA	exon (NM_001037335, exon 9 of 20)	exon (NM_001037335, exon 9 of 20)	3594	NM_033405	85441		NM_033405	ENSG00000130589	HELZ2	PDIP-1|PRIC285	helicase with zinc finger 2	protein-coding
207742	chr7	48094371	48094850	+	0	NA	intron (NM_001287426, intron 3 of 9)	intron (NM_001287426, intron 3 of 9)	5345	NM_001287429	7378		NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
457	chr1	1136621	1138030	+	0	NA	intron (NR_038869, intron 1 of 2)	CpG	308	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
142060	chr20	2093171	2093550	+	0	NA	Intergenic	Intergenic	-8467	NM_080836	140901		NM_080836	ENSG00000125834	STK35	CLIK1|STK35L1	serine/threonine kinase 35	protein-coding
5636	chr1	26202041	26202630	+	0	NA	intron (NM_198137, intron 9 of 9)	intron (NM_198137, intron 9 of 9)	11733	NM_198137	378807		NM_198137	ENSG00000188782	CATSPER4	-	cation channel sperm associated 4	protein-coding
170432	chr3	185897651	185897950	+	0	NA	Intergenic	AluJr|SINE|Alu	40214	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
233847	chrX	1510951	1511050	+	0	NA	intron (NM_178129, intron 1 of 1)	AluY|SINE|Alu	26185	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
40442	chr11	64202551	64202850	+	0	NA	intron (NM_001282653, intron 10 of 13)	L1MC4|LINE|L1	-3220	NM_001382448	83706		NM_031471	ENSG00000149781	FERMT3	KIND3|MIG-2|MIG2B|UNC112C|URP2|URP2SF	FERM domain containing kindlin 3	protein-coding
103849	chr17	79708471	79709280	+	0	NA	non-coding (NR_109783, exon 2 of 2)	non-coding (NR_109783, exon 2 of 2)	1609	NR_109783	100652929		NR_109783	ENSG00000267719	LINC02078	HP09025	long intergenic non-protein coding RNA 2078	ncRNA
75897	chr15	69806371	69806530	+	0	NA	Intergenic	Intergenic	-28784	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
45596	chr11	118895421	118896080	+	0	NA	TTS (NR_165445)	TTS (NR_165445)	2358	NM_032966	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
121225	chr19	46629101	46629300	+	0	NA	Intergenic	MIRb|SINE|MIR	-4111	NM_000960	5739		NM_000960	ENSG00000160013	PTGIR	IP|PRIPR	prostaglandin I2 receptor	protein-coding
62549	chr13	99657821	99659230	+	0	NA	intron (NM_206808, intron 1 of 8)	intron (NM_206808, intron 1 of 8)	15466	NR_036191	100422861		NR_036191	ENSG00000263615	MIR4306	mir-4306	microRNA 4306	ncRNA
219716	chr8	81006421	81006880	+	0	NA	intron (NM_018440, intron 3 of 8)	intron (NM_018440, intron 3 of 8)	105418	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
115265	chr19	14541671	14541830	+	0	NA	intron (NM_138501, intron 1 of 12)	intron (NM_138501, intron 1 of 12)	12156	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
213026	chr7	131030301	131030900	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	76430	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
158084	chr22	49983071	49984030	+	0	NA	Intergenic	CpG	20684	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
97024	chr17	42306851	42306950	+	0	NA	intron (NM_001288719, intron 12 of 17)	AluSx1|SINE|Alu	18844	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
132799	chr2	110299021	110299450	+	0	NA	Intergenic	CpG	14382	NR_049830	100847033		NR_049830	ENSG00000263881	MIR4436B2	-	microRNA 4436b-2	ncRNA
202797	chr6	159114521	159114780	+	0	NA	Intergenic	L1MB7|LINE|L1	-54750	NM_032532	84624		NM_032532	ENSG00000164694	FNDC1	AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1	fibronectin type III domain containing 1	protein-coding
15644	chr1	150754351	150754450	+	0	NA	intron (NM_001199739, intron 3 of 6)	AluSx1|SINE|Alu	11378	NM_004079	1520		NM_004079	ENSG00000163131	CTSS	-	cathepsin S	protein-coding
25737	chr10	9069101	9069500	+	0	NA	Intergenic	Intergenic	171311	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
84626	chr16	30705521	30706150	+	0	NA	intron (NM_006662, intron 4 of 33)	AluY|SINE|Alu	-4702	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
160820	chr3	33045751	33046050	+	0	NA	intron (NM_000404, intron 10 of 15)	intron (NM_000404, intron 10 of 15)	50932	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
98751	chr17	48081371	48081530	+	0	NA	intron (NM_001127228, intron 1 of 4)	AluSq2|SINE|Alu	19736	NM_006807	10951		NM_006807	ENSG00000108468	CBX1	CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|Hp1beta|M31|MOD1|p25beta	chromobox 1	protein-coding
2623	chr1	10188471	10189050	+	0	NA	Intergenic	AluSx|SINE|Alu	-21810	NM_183416	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
8891	chr1	43836321	43836830	+	0	NA	intron (NM_174963, intron 5 of 12)	intron (NM_174963, intron 5 of 12)	-2047	NR_106727	102464830		NR_106727	ENSG00000283477	MIR6079	hsa-mir-6079	microRNA 6079	ncRNA
141752	chr2	241902201	241902580	+	0	NA	intron (NM_001382369, intron 1 of 2)	CpG	195	NM_001382369	285095		NM_001382368	ENSG00000216921	FAM240C	-	family with sequence similarity 240 member C	protein-coding
34387	chr10	132331471	132332950	+	0	NA	promoter-TSS (NM_001318883)	promoter-TSS (NM_001318883)	17	NM_001143759	80313		NM_030626	ENSG00000148814	LRRC27	-	leucine rich repeat containing 27	protein-coding
44319	chr11	102392001	102392430	+	0	NA	Intergenic	L1P4d|LINE|L1	44841	NM_001256163	329		NM_001166	ENSG00000110330	BIRC2	API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1	baculoviral IAP repeat containing 2	protein-coding
88497	chr16	85235271	85236330	+	0	NA	Intergenic	CpG	28004	NR_162142	113219463		NR_162142		MIR12128	-	microRNA 12128	ncRNA
101868	chr17	74273921	74275350	+	0	NA	intron (NM_001172810, intron 1 of 13)	intron (NM_001172810, intron 1 of 13)	401	NM_023036	64446		NM_023036	ENSG00000171595	DNAI2	CILD9|DIC2|oda6	dynein axonemal intermediate chain 2	protein-coding
68381	chr14	78959851	78959950	+	0	NA	intron (NR_158975, intron 12 of 21)	intron (NR_158975, intron 12 of 21)	-240082	NR_135159	105370586		NR_135159	ENSG00000258419	LOC105370586	-	uncharacterized LOC105370586	ncRNA
111094	chr19	3192201	3192880	+	0	NA	exon (NM_001321463, exon 2 of 15)	exon (NM_001321463, exon 2 of 15)	6610	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
87356	chr16	70377321	70377780	+	0	NA	3' UTR (NM_006927, exon 7 of 7)	3' UTR (NM_006927, exon 7 of 7)	30647	NM_018332	55308		NM_018332	ENSG00000168872	DDX19A	DDX19-DDX19L|DDX19L	DEAD-box helicase 19A	protein-coding
151014	chr21	44457471	44457630	+	0	NA	3' UTR (NM_030891, exon 2 of 2)	3' UTR (NM_030891, exon 2 of 2)	2040	NM_030891	81543		NM_030891	ENSG00000160233	LRRC3	C21orf102|C21orf30|LRRC3DN	leucine rich repeat containing 3	protein-coding
10196	chr1	61781901	61782100	+	0	NA	intron (NM_176877, intron 7 of 42)	MER68|LTR|ERVL	39520	NM_176877	10207		NM_005799	ENSG00000132849	PATJ	Cipp|INADL|InaD-like|hINADL	PATJ crumbs cell polarity complex component	protein-coding
174720	chr4	42653951	42654050	+	0	NA	intron (NM_001105529, intron 1 of 35)	MER5A1|DNA|hAT-Charlie	3105	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
135113	chr2	157411021	157411280	+	0	NA	Intergenic	L1MEd|LINE|L1	-30641	NR_034169	728066		NR_034169		FAM133DP	-	family with sequence similarity 133, member A pseudogene	pseudo
192918	chr6	27672151	27672680	+	0	NA	Intergenic	Intergenic	-21620	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
19281	chr1	172746151	172746950	+	0	NA	Intergenic	Intergenic	87447	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
87891	chr16	78761401	78761780	+	0	NA	intron (NM_016373, intron 8 of 8)	intron (NM_016373, intron 8 of 8)	661936	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
151387	chr21	45972851	45974320	+	0	NA	intron (NR_109931, intron 1 of 1)	CpG	615	NR_109931	101928796		NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
87405	chr16	70574521	70575450	+	0	NA	3' UTR (NM_012426, exon 26 of 26)	3' UTR (NM_012426, exon 26 of 26)	-4910	NM_152456	146433		NM_152456	ENSG00000157368	IL34	C16orf77|IL-34	interleukin 34	protein-coding
90933	chr17	2612451	2612800	+	0	NA	intron (NM_000430, intron 1 of 10)	AluJb|SINE|Alu	18971	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
95771	chr17	38673101	38673540	+	0	NA	3' UTR (NM_001130677, exon 1 of 1).2	3' UTR (NM_001130677, exon 1 of 1).2	1637	NM_001130677	100170841		NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding
91779	chr17	7006471	7006830	+	0	NA	intron (NM_000697, intron 11 of 13)	intron (NM_000697, intron 11 of 13)	5684	NR_040089	100506713		NR_040089	ENSG00000215067	ALOX12-AS1	-	ALOX12 antisense RNA 1	ncRNA
4794	chr1	23574101	23574700	+	0	NA	Intergenic	Intergenic	-14899	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
41055	chr11	65479321	65479850	+	0	NA	Intergenic	Intergenic	-18153	NR_002819	378938		NR_002819	ENSG00000251562	MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1	ncRNA
203824	chr7	1415421	1415700	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	43910	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
130795	chr2	86859421	86860030	+	0	NA	intron (NM_172213, intron 1 of 5)	intron (NM_172213, intron 1 of 5)	-2100	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
205184	chr7	7642071	7642330	+	0	NA	intron (NM_002947, intron 4 of 7)	AluJo|SINE|Alu	1448	NM_001302348	729852		NM_001302348	ENSG00000219545	UMAD1	RPA3-AS1|RPA3OS	UBAP1-MVB12-associated (UMA) domain containing 1	protein-coding
210977	chr7	101815001	101817090	+	0	NA	promoter-TSS (NM_001202543)	promoter-TSS (NM_001202543)	38	NM_001202544	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
36815	chr11	9672351	9672980	+	0	NA	intron (NM_001297714, intron 1 of 10)	AluJo|SINE|Alu	8588	NM_015055	23075		NM_015055	ENSG00000133789	SWAP70	HSPC321|SWAP-70	switching B cell complex subunit SWAP70	protein-coding
164579	chr3	64484401	64484630	+	0	NA	Intergenic	Intergenic	-76831	NR_110150	101929335		NR_110150	ENSG00000241158	ADAMTS9-AS1	-	ADAMTS9 antisense RNA 1	ncRNA
146405	chr20	49323471	49324150	+	0	NA	Intergenic	Intergenic	43127	NR_003030	692057		NR_003030	ENSG00000212304	SNORD12	HBII-99|MIR1259|MIRN1259	small nucleolar RNA, C/D box 12	snoRNA
131108	chr2	89909321	89909750	+	0	NA	Intergenic	Intergenic	-271628	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
158317	chr22	50432851	50432950	+	0	NA	intron (NM_001351641, intron 12 of 23)	intron (NM_001351641, intron 12 of 23)	25458	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
118397	chr19	35738551	35739050	+	0	NA	TTS (NR_144339)	TTS (NR_144339)	3652	NR_144339	79713		NM_024660	ENSG00000126246	IGFLR1	TMEM149	IGF like family receptor 1	protein-coding
87198	chr16	69426221	69426750	+	0	NA	intron (NM_030579, intron 1 of 4)	AluSg|SINE|Alu	1866	NM_030579	80777		NM_030579	ENSG00000103018	CYB5B	CYB5-M|CYPB5M|OMB5	cytochrome b5 type B	protein-coding
10358	chr1	64939271	64939630	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	27099	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
101896	chr17	74370401	74370600	+	0	NA	intron (NM_001331077, intron 2 of 3)	intron (NM_001331077, intron 2 of 3)	2994	NM_001331077	350383		NM_181790	ENSG00000257008	GPR142	GPRg1b|PGR2	G protein-coupled receptor 142	protein-coding
81540	chr16	9106171	9106530	+	0	NA	intron (NM_014117, intron 3 of 3)	AluSx1|SINE|Alu	14706	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
178041	chr4	139603751	139604000	+	0	NA	Intergenic	Intergenic	-47106	NM_001306199	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
1221	chr1	2269501	2270130	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	41496	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
51013	chr12	49702771	49703080	+	0	NA	intron (NM_175736, intron 1 of 25)	intron (NM_175736, intron 1 of 25)	4480	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
101437	chr17	67425701	67426030	+	0	NA	intron (NM_181671, intron 1 of 9)	MER58B|DNA|hAT-Charlie	-45624	NR_037517	100500895		NR_037517	ENSG00000207688	MIR548AA2	-	microRNA 548aa-2	ncRNA
231439	chr9	131255051	131255350	+	0	NA	Intergenic	Intergenic	21310	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
227279	chr9	89382701	89382900	+	0	NA	intron (NM_001371200, intron 15 of 20)	intron (NM_001371200, intron 15 of 20)	63949	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
58169	chr12	124963051	124963350	+	0	NA	intron (NM_032656, intron 15 of 26)	L1MB7|LINE|L1	25931	NM_032656	57647		NM_032656	ENSG00000150990	DHX37	DDX37|Dhr1|NEDBAVC|SRXY11	DEAH-box helicase 37	protein-coding
95948	chr17	39002951	39003950	+	0	NA	Intergenic	L2|LINE|L2	23660	NR_135645	105371766		NR_135645	ENSG00000266013	LINC02079	-	long intergenic non-protein coding RNA 2079	ncRNA
78332	chr15	90993991	90995350	+	0	NA	promoter-TSS (NM_003981)	promoter-TSS (NM_003981)	-135	NM_003981	9055		NM_003981	ENSG00000198901	PRC1	ASE1|MAP65	protein regulator of cytokinesis 1	protein-coding
94033	chr17	27296001	27296700	+	0	NA	intron (NM_134265, intron 1 of 6)	intron (NM_134265, intron 1 of 6)	2236	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
179757	chr5	259871	260130	+	0	NA	Intergenic	CpG	11524	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
200498	chr6	135506311	135507100	+	0	NA	intron (NR_152842, intron 2 of 5)	intron (NR_152842, intron 2 of 5)	8904	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
32125	chr10	101231171	101231400	+	0	NA	intron (NR_029380, intron 1 of 2)	intron (NR_029380, intron 1 of 2)	1691	NR_029380	399806		NR_029380		LBX1-AS1	MUSE	LBX1 antisense RNA 1	ncRNA
219133	chr8	66064871	66065240	+	0	NA	intron (NR_146171, intron 4 of 6)	intron (NR_146171, intron 4 of 6)	43502	NM_033105	85479		NM_033105	ENSG00000147570	DNAJC5B	CSP-beta	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding
70726	chr14	103349831	103350480	+	0	NA	Intergenic	(TCAGTCTATG)n|Simple_repeat|Simple_repeat	12306	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
180016	chr5	1021471	1021630	+	0	NA	intron (NM_001271082, intron 3 of 10).2	intron (NM_001271082, intron 3 of 10).2	12588	NM_001271082	85409		NM_033120	ENSG00000145506	NKD2	Naked2	NKD inhibitor of WNT signaling pathway 2	protein-coding
69829	chr14	99227921	99228550	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	43962	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
169359	chr3	160408721	160409280	+	0	NA	intron (NM_005496, intron 4 of 22)	intron (NM_005496, intron 4 of 22)	4255	NR_029525	406951		NR_029525	ENSG00000198987	MIR16-2	MIRN16-2|mir-16-2|mir-16-3	microRNA 16-2	ncRNA
195628	chr6	37822801	37823630	+	0	NA	intron (NM_021943, intron 1 of 5)	intron (NM_021943, intron 1 of 5)	3488	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
71028	chr14	104774701	104775100	+	0	NA	intron (NM_001382433, intron 9 of 15)	intron (NM_001382433, intron 9 of 15)	18701	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
122174	chr19	48902071	48902450	+	0	NA	intron (NM_006184, intron 2 of 12)	AluSc|SINE|Alu	1948	NM_006184	4924		NM_006184	ENSG00000104805	NUCB1	CALNUC|NUC	nucleobindin 1	protein-coding
59984	chr13	32314901	32316400	+	0	NA	promoter-TSS (NM_001136571)	promoter-TSS (NM_001136571)	142	NM_000059	675		NM_000059	ENSG00000139618	BRCA2	BRCC2|BROVCA2|FACD|FAD|FAD1|FANCD|FANCD1|GLM3|PNCA2|XRCC11	BRCA2 DNA repair associated	protein-coding
225162	chr9	33817901	33819450	+	0	NA	intron (NM_017811, intron 1 of 4)	intron (NM_017811, intron 1 of 4)	1515	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
21320	chr1	204518701	204519450	+	0	NA	intron (NM_001204172, intron 1 of 2)	L2b|LINE|L2	2669	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
233525	chrX	14071	14830	+	0	NA	Intergenic	CpG	-261906	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
199476	chr6	118573971	118574130	+	0	NA	intron (NM_206921, intron 2 of 5)	LTR10B2|LTR|ERV1	25754	NM_002667	5350		NM_002667	ENSG00000198523	PLN	CMD1P|CMH18|PLB	phospholamban	protein-coding
228325	chr9	98315521	98315880	+	0	NA	intron (NM_005458, intron 13 of 18)	intron (NM_005458, intron 13 of 18)	-60051	NM_001267571	55357		NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding
86652	chr16	67458251	67458830	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	22617	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
186194	chr5	134218551	134219100	+	0	NA	intron (NM_002715, intron 1 of 6)	AluSc8|SINE|Alu	6729	NR_149151	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
211122	chr7	102526051	102526150	+	0	NA	Intergenic	AluJr|SINE|Alu	-8323	NM_001367767	100271927		NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding
147230	chr20	57405551	57405650	+	0	NA	intron (NM_001291780, intron 4 of 4)	intron (NM_001291780, intron 4 of 4)	-12544	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
119364	chr19	40139701	40140150	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-48982	NM_001142579	284323		NM_001010880	ENSG00000197782	ZNF780A	ZNF780	zinc finger protein 780A	protein-coding
188113	chr5	150382651	150382950	+	0	NA	intron (NM_001371623, intron 17 of 26)	intron (NM_001371623, intron 17 of 26)	25103	NM_001135245	6949		NM_000356	ENSG00000070814	TCOF1	MFD1|TCS|TCS1|treacle	treacle ribosome biogenesis factor 1	protein-coding
482	chr1	1163571	1163730	+	0	NA	Intergenic	CpG	-3454	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
215709	chr8	1479771	1480140	+	0	NA	intron (NM_001346810, intron 3 of 14)	intron (NM_001346810, intron 3 of 14)	141709	NR_103863	100507435		NR_103863	ENSG00000253267	DLGAP2-AS1	-	DLGAP2 antisense RNA 1	ncRNA
97394	chr17	43366171	43366330	+	0	NA	Intergenic	MER11C|LTR|ERVK	22648	NR_027412	100130581		NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA
184235	chr5	96627801	96628430	+	0	NA	intron (NR_130776, intron 4 of 4)	intron (NR_130776, intron 4 of 4)	-33922	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
64336	chr14	23977201	23977430	+	0	NA	intron (NM_001193637, intron 1 of 5)	MER102a|DNA|hAT-Charlie	7300	NM_001193635	317749		NM_198083	ENSG00000187630	DHRS4L2	SDR25C3	dehydrogenase/reductase 4 like 2	protein-coding
181183	chr5	39102451	39102550	+	0	NA	Intergenic	Intergenic	-28101	NM_001285440	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
155463	chr22	38482871	38483750	+	0	NA	TTS (NM_001098504)	TTS (NM_001098504)	15214	NM_006855	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
102088	chr17	74968421	74969080	+	0	NA	intron (NM_030630, intron 1 of 18)	intron (NM_030630, intron 1 of 18)	-1939	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
154065	chr22	30638551	30638730	+	0	NA	intron (NM_001318371, intron 1 of 2)	AluSq2|SINE|Alu	2825	NM_001318370	339665		NM_001001479	ENSG00000100036	SLC35E4	-	solute carrier family 35 member E4	protein-coding
145793	chr20	45405621	45407400	+	0	NA	promoter-TSS (NM_001048223)	promoter-TSS (NM_001048223)	-65	NM_001048224	55861		NM_018478	ENSG00000244274	DBNDD2	C20orf35|CK1BP|HSMNP1	dysbindin domain containing 2	protein-coding
222126	chr8	131947101	131947530	+	0	NA	intron (NM_001323558, intron 4 of 23)	L1M4|LINE|L1	30542	NM_001323557	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
58367	chr12	131709751	131710050	+	0	NA	Intergenic	L2a|LINE|L2	-1190	NM_004592	6433		NM_004592	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor SWAP	protein-coding
187061	chr5	140113071	140115550	+	0	NA	exon (NM_005859, exon 1 of 1)	exon (NM_005859, exon 1 of 1)	201	NM_005859	5813		NM_005859	ENSG00000185129	PURA	MRD31|NEDRIHF|PUR-ALPHA|PUR1|PURALPHA	purine rich element binding protein A	protein-coding
140115	chr2	231512921	231513400	+	0	NA	intron (NR_024079, intron 2 of 2)	AluSz|SINE|Alu	1179	NR_024079	151477		NM_173513	ENSG00000181798	LINC00471	C2orf52	long intergenic non-protein coding RNA 471	ncRNA
46210	chr11	123584201	123584400	+	0	NA	intron (NM_001286563, intron 3 of 20)	intron (NM_001286563, intron 3 of 20)	24038	NM_001286564	57476		NM_020716	ENSG00000023171	GRAMD1B	LINC01059	GRAM domain containing 1B	protein-coding
122620	chr19	49808671	49810300	+	0	NA	exon (NM_001352262, exon 6 of 11)	exon (NM_001352262, exon 6 of 11)	3807	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
183755	chr5	81537901	81538500	+	0	NA	intron (NM_001256733, intron 4 of 15)	Tigger1|DNA|TcMar-Tigger	-144066	NM_130767	134526		NM_130767	ENSG00000172497	ACOT12	CACH-1|Cach|STARD15|THEAL	acyl-CoA thioesterase 12	protein-coding
157231	chr22	43266071	43266430	+	0	NA	intron (NM_173050, intron 4 of 21)	intron (NM_173050, intron 4 of 21)	-9692	NR_134582	101927447		NR_134582	ENSG00000203527	SCUBE1-AS1	-	SCUBE1 antisense RNA 1	ncRNA
147384	chr20	58648271	58648700	+	0	NA	Intergenic	Intergenic	-2768	NR_037945	100534593		NR_037945	ENSG00000254995	STX16-NPEPL1	-	STX16-NPEPL1 readthrough (NMD candidate)	ncRNA
72552	chr15	34397801	34398200	+	0	NA	intron (NM_001368072, intron 7 of 23)	intron (NM_001368072, intron 7 of 23)	-8232	NM_181077	23015		NM_015003	ENSG00000175265	GOLGA8A	CFAP286|FAP286|GM88|GOLGA8B	golgin A8 family member A	protein-coding
148810	chr21	8252791	8254300	+	0	NA	intron (NR_003287, intron 1 of 2)	CpG-18247	1313	NR_030386	724033		NR_030386	ENSG00000284419	MIR663A	MIR663|MIRN663|hsa-mir-663|hsa-mir-663a|mir-663a	microRNA 663a	ncRNA
58678	chr12	132541971	132542700	+	0	NA	intron (NM_001382743, intron 5 of 5)	intron (NM_001382743, intron 5 of 5)	36929	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
134518	chr2	143451751	143452080	+	0	NA	intron (NM_018460, intron 8 of 13)	intron (NM_018460, intron 8 of 13)	322496	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
103876	chr17	79779801	79780200	+	0	NA	intron (NM_032647, intron 3 of 3)	intron (NM_032647, intron 3 of 3)	1822	NM_032647	84733		NM_005189	ENSG00000173894	CBX2	CDCA6|M33|SRXY5	chromobox 2	protein-coding
160571	chr3	30697051	30697350	+	0	NA	Intergenic	Intergenic	90599	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
33766	chr10	122557371	122557600	+	0	NA	Intergenic	Intergenic	-3269	NM_001320644	1755		NM_004406	ENSG00000187908	DMBT1	GP340|SAG|SALSA|muclin	deleted in malignant brain tumors 1	protein-coding
37564	chr11	18749311	18749450	+	0	NA	intron (NM_032781, intron 3 of 14)	MIRb|SINE|MIR	-23192	NR_160413	283284		NM_173588	ENSG00000179057	IGSF22	IGFN2	immunoglobulin superfamily member 22	protein-coding
24807	chr10	134051	136780	+	0	NA	promoter-TSS (NM_001370121)	promoter-TSS (NM_001370121)	-40	NM_001370117	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
71156	chr14	105018201	105018750	+	0	NA	intron (NM_017955, intron 1 of 1)	intron (NM_017955, intron 1 of 1)	2608	NM_017955	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
236816	chrX	79170071	79170250	+	0	NA	intron (NM_032553, intron 2 of 2)	MER5A1|DNA|hAT-Charlie	25472	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
53731	chr12	68631451	68631850	+	0	NA	intron (NM_001251917, intron 1 of 5)	intron (NM_001251917, intron 1 of 5)	-4275	NR_033335	100379132		NR_033335	ENSG00000206650	SNORA70G	U70G	small nucleolar RNA, H/ACA box 70G	snoRNA
151881	chr22	18824821	18825080	+	0	NA	Intergenic	Intergenic	-25168	NR_135922	102725072		NR_135922	ENSG00000293159	POM121L15P	-	POM121 transmembrane nucleoporin like 15, pseudogene	pseudo
104923	chr17	81917571	81919130	+	0	NA	promoter-TSS (NM_016538)	promoter-TSS (NM_016538)	-174	NM_016538	51547		NM_016538	ENSG00000187531	SIRT7	SIR2L7	sirtuin 7	protein-coding
91259	chr17	3973201	3973700	+	0	NA	Intergenic	Intergenic	-3653	NR_146884	105371496		NR_146884		LINC01975	-	long intergenic non-protein coding RNA 1975	ncRNA
95251	chr17	35433541	35434550	+	0	NA	promoter-TSS (NM_001289009)	promoter-TSS (NM_001289009)	-871	NM_001289009	55106		NM_018042	ENSG00000172123	SLFN12	SLFN3	schlafen family member 12	protein-coding
113938	chr19	10746171	10746530	+	0	NA	intron (NM_001005362, intron 1 of 19)	intron (NM_001005362, intron 1 of 19)	27946	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
236531	chrX	72117071	72117230	+	0	NA	intron (NM_001013627, intron 1 of 7)	intron (NM_001013627, intron 1 of 7)	14765	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
50344	chr12	47111401	47112150	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	-31816	NM_001370299	347902		NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding
35352	chr11	1226151	1226450	+	0	NA	intron (NM_002458, intron 3 of 48)	intron (NM_002458, intron 3 of 48)	3234	NM_002458	727897		NM_002458	ENSG00000117983	MUC5B	MG1|MUC-5B|MUC5|MUC9	mucin 5B, oligomeric mucus/gel-forming	protein-coding
11383	chr1	89659451	89660930	+	0	NA	intron (NM_032270, intron 1 of 2)	intron (NM_032270, intron 1 of 2)	27070	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
237188	chrX	107719321	107719700	+	0	NA	intron (NM_198057, intron 1 of 2)	MIRb|SINE|MIR	-2448	NM_004089	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
225078	chr9	33292201	33292800	+	0	NA	intron (NM_147134, intron 1 of 15)	intron (NM_147134, intron 1 of 15)	1984	NM_147134	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
141880	chr20	761001	761480	+	0	NA	intron (NM_001370085, intron 5 of 5)	CpG	7260	NM_033409	113278		NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
72044	chr15	28728101	28728380	+	0	NA	Intergenic	Intergenic	-9343	NR_026589	440253		NR_026589		WHAMMP2	WHAMML2|WHDC1L2	WHAMM pseudogene 2	pseudo
28237	chr10	45453271	45453430	+	0	NA	promoter-TSS (NR_120674)	promoter-TSS (NR_120674)	-229	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
933	chr1	1723451	1724940	+	0	NA	TTS (NM_001199787)	TTS (NM_001199787)	162	NR_132739	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
158536	chr3	3296721	3297290	+	0	NA	Intergenic	Intergenic	-117288	NM_001173482	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
7028	chr1	31923701	31924480	+	0	NA	intron (NM_080391, intron 1 of 5)	intron (NM_080391, intron 1 of 5)	13728	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
125910	chr2	24919801	24921900	+	0	NA	promoter-TSS (NM_001377130)	promoter-TSS (NM_001377130)	-613	NM_001320613	109		NM_004036	ENSG00000138031	ADCY3	AC-III|AC3|BMIQ19	adenylate cyclase 3	protein-coding
145694	chr20	45014751	45014850	+	0	NA	intron (NM_006282, intron 9 of 10)	intron (NM_006282, intron 9 of 10)	48288	NM_001352385	6789		NM_006282	ENSG00000101109	STK4	KRS2|MST1|YSK3	serine/threonine kinase 4	protein-coding
8649	chr1	41799521	41800100	+	0	NA	intron (NM_024503, intron 1 of 8)	intron (NM_024503, intron 1 of 8)	119112	NR_038260	59269		NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	HIVEP zinc finger 3	protein-coding
109115	chr18	80105151	80105900	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	-3737	NM_014913	22850		NM_014913	ENSG00000101544	ADNP2	ZNF508	ADNP homeobox 2	protein-coding
158811	chr3	9728801	9729100	+	0	NA	intron (NM_153635, intron 19 of 19)	intron (NM_153635, intron 19 of 19)	-2779	NM_001319049	7862		NM_004634	ENSG00000156983	BRPF1	BR140|IDDDFP	bromodomain and PHD finger containing 1	protein-coding
118891	chr19	38689371	38689730	+	0	NA	intron (NM_004924, intron 1 of 20)	AluJr|SINE|Alu	41901	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
116389	chr19	17951691	17953480	+	0	NA	intron (NM_002248, intron 1 of 10)	intron (NM_002248, intron 1 of 10)	1283	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
86917	chr16	68078721	68079000	+	0	NA	exon (NM_001271762, exon 16 of 16)	exon (NM_001271762, exon 16 of 16)	-6510	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
22639	chr1	223717771	223718700	+	0	NA	intron (NM_001748, intron 2 of 20)	intron (NM_001748, intron 2 of 20)	5696	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
83173	chr16	23473401	23473600	+	0	NA	intron (NM_015044, intron 14 of 16)	AluSz|SINE|Alu	-20311	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
188736	chr5	157526351	157526650	+	0	NA	intron (NM_033274, intron 5 of 22)	intron (NM_033274, intron 5 of 22)	49275	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
137599	chr2	197288421	197288950	+	0	NA	intron (NR_046837, intron 5 of 5)	L1MA4A|LINE|L1	13834	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
44117	chr11	96026101	96026700	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-102293	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
207597	chr7	44969451	44969750	+	0	NA	intron (NM_033054, intron 11 of 21)	intron (NM_033054, intron 11 of 21)	9415	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
34189	chr10	128185101	128185300	+	0	NA	Intergenic	Intergenic	-58777	NM_001145966	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
39047	chr11	47885921	47886430	+	0	NA	Intergenic	Intergenic	-37631	NM_015231	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
199449	chr6	117555721	117556480	+	0	NA	intron (NM_173674, intron 14 of 14)	intron (NM_173674, intron 14 of 14)	46411	NM_001017408	57120		NM_020399	ENSG00000047932	GOPC	CAL|FIG|GOPC1|PIST|dJ94G16.2	golgi associated PDZ and coiled-coil motif containing	protein-coding
113074	chr19	8254101	8254830	+	0	NA	intron (NM_024552, intron 3 of 11)	intron (NM_024552, intron 3 of 11)	45095	NM_024552	79603		NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding
177340	chr4	109998771	109999150	+	0	NA	intron (NM_001963, intron 20 of 23)	OldhAT1|DNA|hAT-Ac	86077	NM_001178131	1950		NM_001963	ENSG00000138798	EGF	HOMG4|URG	epidermal growth factor	protein-coding
135360	chr2	160413051	160413150	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	-5218	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
215631	chr8	122051	122150	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-8998	NR_168395	101927506		NR_168395		LOC101927506	-	uncharacterized LOC101927506	ncRNA
69560	chr14	96790271	96790430	+	0	NA	intron (NR_146552, intron 3 of 3)	MIRb|SINE|MIR	-7032	NM_003384	7443		NM_003384	ENSG00000100749	VRK1	HMNR10|PCH1|PCH1A	VRK serine/threonine kinase 1	protein-coding
177875	chr4	128709451	128709550	+	0	NA	Intergenic	LTR50|LTR|ERVL	-100200	NM_199320	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
71398	chr14	105524751	105525130	+	0	NA	Intergenic	L1MD2|LINE|L1	-1643	NM_025268	80757		NM_025268	ENSG00000184986	TMEM121	TMEM121A|hhole|hole	transmembrane protein 121	protein-coding
21065	chr1	203295851	203296330	+	0	NA	Intergenic	Intergenic	8390	NR_117098	100506775		NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA
209781	chr7	87474971	87475130	+	0	NA	intron (NM_018850, intron 2 of 26)	intron (NM_018850, intron 2 of 26)	630	NM_018849	5244		NM_000443	ENSG00000005471	ABCB4	ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3	ATP binding cassette subfamily B member 4	protein-coding
16619	chr1	155080521	155081140	+	0	NA	intron (NM_004952, intron 1 of 4)	CpG	1993	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
116083	chr19	17247821	17248830	+	0	NA	TTS (NM_001321417)	TTS (NM_001321417)	-2983	NM_005234	2063		NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding
38901	chr11	47414901	47415180	+	0	NA	exon (NM_001128225, exon 9 of 10)	exon (NM_001128225, exon 9 of 10)	6450	NM_001128225	91252		NM_152264	ENSG00000165915	SLC39A13	EDSSPD3|LZT-Hs9|SCDEDS|ZIP13	solute carrier family 39 member 13	protein-coding
55658	chr12	107332101	107332300	+	0	NA	intron (NM_001347944, intron 1 of 14)	MIRc|SINE|MIR	11612	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
64907	chr14	35402001	35403000	+	0	NA	exon (NM_020529, exon 5 of 6)	exon (NM_020529, exon 5 of 6)	2249	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
52796	chr12	56722221	56722950	+	0	NA	intron (NM_001365896, intron 2 of 8)	AluSg|SINE|Alu	2714	NM_001365896	4666		NM_005594	ENSG00000196531	NACA	HSD48|NAC-alpha|NACA1|skNAC	nascent polypeptide associated complex subunit alpha	protein-coding
38372	chr11	44623351	44623650	+	0	NA	Intergenic	Intergenic	57837	NM_001024844	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
225934	chr9	40652851	40653150	+	0	NA	Intergenic	Intergenic	153019	NR_136300	102724580		NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
86725	chr16	67567651	67568080	+	0	NA	intron (NM_006565, intron 1 of 11)	AluJo|SINE|Alu	-2908	NM_001363916	10664		NM_006565	ENSG00000102974	CTCF	CFAP108|FAP108|MRD21	CCCTC-binding factor	protein-coding
197647	chr6	84227101	84228550	+	0	NA	promoter-TSS (NM_001286206)	promoter-TSS (NM_001286206)	-182	NM_001286206	22832		NM_014895	ENSG00000135315	CEP162	C6orf84|KIAA1009|QN1	centrosomal protein 162	protein-coding
84448	chr16	30419621	30420130	+	0	NA	promoter-TSS (NR_145731)	promoter-TSS (NR_145731)	-116	NR_145731	109616959		NR_145731	ENSG00000199787	SNORA80C	-	small nucleolar RNA, H/ACA box 80C	snoRNA
69595	chr14	97380501	97381300	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-77916	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
98271	chr17	46194601	46195730	+	0	NA	intron (NR_034172, intron 1 of 1)	intron (NR_034172, intron 1 of 1)	1592	NR_034172	644246		NR_034172	ENSG00000214401	KANSL1-AS1	-	KANSL1 antisense RNA 1	ncRNA
171844	chr4	703171	703500	+	0	NA	Intergenic	Intergenic	-2497	NM_006315	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
210808	chr7	100871971	100872130	+	0	NA	intron (NM_003302, intron 7 of 8)	AluSz|SINE|Alu	-3053	NM_001128854	51593		NM_015908	ENSG00000087087	SRRT	ARS2|ASR2|serrate	serrate, RNA effector molecule	protein-coding
227246	chr9	89340351	89340650	+	0	NA	intron (NM_001282690, intron 9 of 16)	intron (NM_001282690, intron 9 of 16)	21649	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
147017	chr20	53587471	53587630	+	0	NA	intron (NM_006526, intron 1 of 5)	intron (NM_006526, intron 1 of 5)	6289	NM_001385034	7764		NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding
21090	chr1	203326651	203328830	+	0	NA	Intergenic	CpG	22221	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
111406	chr19	3769851	3770050	+	0	NA	3' UTR (NM_001319074, exon 3 of 3)	3' UTR (NM_001319074, exon 3 of 3)	2278	NM_001319074	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
80589	chr16	2905021	2906380	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-6231	NM_001308068	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
43902	chr11	88689601	88689800	+	0	NA	intron (NM_001143831, intron 3 of 9)	intron (NM_001143831, intron 3 of 9)	185124	NR_049724	100873989		NR_049724	ENSG00000255082	GRM5-AS1	-	GRM5 antisense RNA 1	ncRNA
153555	chr22	26615201	26615480	+	0	NA	intron (NM_001887, intron 2 of 5)	intron (NM_001887, intron 2 of 5)	2687	NM_001887	1414		NM_001887	ENSG00000100122	CRYBB1	CATCN3|CTRCT17	crystallin beta B1	protein-coding
26694	chr10	22638921	22639450	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	74923	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
525	chr1	1221721	1222550	+	0	NA	intron (NM_016547, intron 4 of 6)	intron (NM_016547, intron 4 of 6)	-7982	NM_003327	7293		NM_003327	ENSG00000186827	TNFRSF4	ACT35|CD134|IMD16|OX40|TXGP1L	TNF receptor superfamily member 4	protein-coding
204322	chr7	2713351	2714030	+	0	NA	3' UTR (NM_133463, exon 7 of 7)	3' UTR (NM_133463, exon 7 of 7)	25488	NM_001384741	155185		NM_133463	ENSG00000174945	AMZ1	-	archaelysin family metallopeptidase 1	protein-coding
1130	chr1	2141951	2142250	+	0	NA	intron (NR_146911, intron 2 of 15)	intron (NR_146911, intron 2 of 15)	37384	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
43371	chr11	76963021	76963280	+	0	NA	intron (NM_001300954, intron 3 of 10)	MER61F|LTR|ERV1	-71248	NM_138706	192134		NM_138706	ENSG00000198488	B3GNT6	B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	protein-coding
164546	chr3	63966551	63967080	+	0	NA	promoter-TSS (NM_001128149)	promoter-TSS (NM_001128149)	-979	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
192692	chr6	26283901	26286000	+	0	NA	TTS (NM_003543)	TTS (NM_003543)	584	NM_003543	8365		NM_003543	ENSG00000158406	H4C8	H4-16|H4/h|H4C1|H4C11|H4C12|H4C13|H4C14|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C9|H4FH|HIST1H4H	H4 clustered histone 8	protein-coding
139611	chr2	225032301	225032500	+	0	NA	intron (NM_014689, intron 1 of 55)	intron (NM_014689, intron 1 of 55)	10068	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
175986	chr4	81605301	81605500	+	0	NA	Intergenic	Intergenic	-133493	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
63112	chr13	113323751	113324050	+	0	NA	TTS (NM_001286733)	TTS (NM_001286733)	26661	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
216219	chr8	11986351	11986680	+	0	NA	Intergenic	L1PBa|LINE|L1	4194	NM_001033017	613209		NM_001033017	ENSG00000205883	DEFB135	DEFB136	defensin beta 135	protein-coding
130822	chr2	87064921	87065530	+	0	NA	intron (NR_026846, intron 1 of 10)	intron (NR_026846, intron 1 of 10)	11188	NR_026846	285074		NM_001012626	ENSG00000285793	ANAPC1P2	-	ANAPC1 pseudogene 2	pseudo
207411	chr7	44348371	44348530	+	0	NA	Intergenic	Intergenic	-22819	NM_172079	816		NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB|CaMKIIbeta|MRD54	calcium/calmodulin dependent protein kinase II beta	protein-coding
162326	chr3	47518851	47519150	+	0	NA	Intergenic	AluY|SINE|Alu	-5288	NM_001031703	54859		NM_017713	ENSG00000163832	ELP6	C3orf75|TMEM103	elongator acetyltransferase complex subunit 6	protein-coding
70203	chr14	100553501	100553700	+	0	NA	intron (NM_001385102, intron 1 of 6)	L2c|LINE|L2	-5473	NM_001385104	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
213277	chr7	134672071	134672430	+	0	NA	intron (NM_001293085, intron 3 of 3)	intron (NM_001293085, intron 3 of 3)	25397	NM_001724	669		NM_001724	ENSG00000172331	BPGM	DPGM|ECYT8	bisphosphoglycerate mutase	protein-coding
202542	chr6	158637021	158637280	+	0	NA	exon (NM_001291603, exon 4 of 5)	exon (NM_001291603, exon 4 of 5)	7593	NM_006519	6993		NM_006519	ENSG00000146425	DYNLT1	CW-1|TCTEL1|TCTEX1|tctex-1	dynein light chain Tctex-type 1	protein-coding
57300	chr12	121655701	121656230	+	0	NA	intron (NM_173855, intron 2 of 5)	AluY|SINE|Alu	13689	NM_173855	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
60007	chr13	32519451	32519750	+	0	NA	intron (NM_001320836, intron 5 of 9)	AluSx1|SINE|Alu	-10205	NR_026928	116828		NR_026928	ENSG00000281026	N4BP2L2-IT2	CG030	N4BPL2 intronic transcript 2	ncRNA
233341	chr9	137446501	137446700	+	0	NA	TTS (NM_001178064)	TTS (NM_001178064)	3486	NR_106964	102466223		NR_106964	ENSG00000284317	MIR7114	hsa-mir-7114	microRNA 7114	ncRNA
228541	chr9	101396821	101397150	+	0	NA	intron (NM_019051, intron 1 of 1)	L1MA6|LINE|L1	1633	NM_019051	54534		NM_019051	ENSG00000136897	MRPL50	MRP-L50|mL50	mitochondrial ribosomal protein L50	protein-coding
174173	chr4	36285871	36287280	+	0	NA	intron (NR_165630, intron 2 of 10)	intron (NR_165630, intron 2 of 10)	4959	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
142119	chr20	2684801	2685000	+	0	NA	Intergenic	L1PA5|LINE|L1	-7880	NR_138537	57593		NM_020833	ENSG00000088881	EBF4	COE4|O/E-4|OE-4	EBF family member 4	protein-coding
19806	chr1	182610201	182610630	+	0	NA	Intergenic	Intergenic	-4725	NR_036490	284648		NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA
150712	chr21	43726771	43727550	+	0	NA	intron (NM_003681, intron 1 of 10)	intron (NM_003681, intron 1 of 10)	8031	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
110792	chr19	2451451	2451950	+	0	NA	intron (NM_032737, intron 1 of 11)	intron (NM_032737, intron 1 of 11)	5259	NM_032737	84823		NM_032737	ENSG00000176619	LMNB2	EPM9|LAMB2|LMN2|MCPH27	lamin B2	protein-coding
89033	chr16	88425471	88425830	+	0	NA	intron (NM_001367624, intron 2 of 2)	MIR|SINE|MIR	-27630	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
45518	chr11	118704651	118706230	+	0	NA	Intergenic	Intergenic	-25790	NM_001301065	11181		NM_007180	ENSG00000118094	TREH	TRE|TREA|TREHD	trehalase	protein-coding
127693	chr2	43212021	43213600	+	0	NA	Intergenic	Intergenic	13796	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
48146	chr12	7917951	7920330	+	0	NA	TTS (NM_006931)	TTS (NM_006931)	17047	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
140054	chr2	231394521	231394800	+	0	NA	Intergenic	MIR|SINE|MIR	-1050	NM_145236	93010		NM_145236	ENSG00000156966	B3GNT7	beta3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
216651	chr8	22126021	22126630	+	0	NA	intron (NM_018411, intron 3 of 17)	intron (NM_018411, intron 3 of 17)	4685	NM_005144	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
226604	chr9	73160701	73161100	+	0	NA	intron (NM_000700, intron 6 of 12)	intron (NM_000700, intron 6 of 12)	9035	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
189124	chr5	170632821	170633680	+	0	NA	intron (NM_014592, intron 1 of 7)	intron (NM_014592, intron 1 of 7)	48220	NR_136214	105377716		NR_136214	ENSG00000253591	KCNIP1-AS1	-	KCNIP1 antisense RNA 1	ncRNA
7207	chr1	32289121	32289780	+	0	NA	Intergenic	Intergenic	-2633	NM_004964	3065		NM_004964	ENSG00000116478	HDAC1	GON-10|HD1|KDAC1|RPD3|RPD3L1	histone deacetylase 1	protein-coding
193375	chr6	30341151	30341450	+	0	NA	intron (NM_001369523, intron 8 of 8).5	MER94|DNA|hAT-Blackjack	-3856	NM_024839	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
10811	chr1	77781271	77782030	+	0	NA	intron (NM_001363584, intron 1 of 15)	HAL1|LINE|L1	1845	NM_001363586	374986		NM_198549	ENSG00000180488	MIGA1	FAM73A	mitoguardin 1	protein-coding
86959	chr16	68127201	68127600	+	0	NA	intron (NM_173165, intron 3 of 9)	HAL1b|LINE|L1	42030	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
193840	chr6	31529271	31530330	+	0	NA	TTS (NM_004640).5	TTS (NM_004640).5	838	NM_001011700	401250		NM_001011700	ENSG00000204511	MCCD1	-	mitochondrial coiled-coil domain 1	protein-coding
24367	chr1	241551421	241552280	+	0	NA	intron (NM_003679, intron 4 of 14)	MER5A1|DNA|hAT-Charlie	19472	NM_003679	8564		NM_003679	ENSG00000117009	KMO	dJ317G22.1	kynurenine 3-monooxygenase	protein-coding
14530	chr1	144851201	144851630	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	133244	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
5037	chr1	24519321	24519580	+	0	NA	intron (NM_001251985, intron 1 of 1)	intron (NM_001251985, intron 1 of 1)	5136	NM_001251982	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
139259	chr2	219441371	219442730	+	0	NA	intron (NM_005876, intron 1 of 40)	(CGCCGC)n|Simple_repeat|Simple_repeat	7207	NM_005876	10290		NM_005876	ENSG00000072195	SPEG	APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta	striated muscle enriched protein kinase	protein-coding
160191	chr3	23804321	23804780	+	0	NA	non-coding (NR_046652, exon 2 of 2)	non-coding (NR_046652, exon 2 of 2)	-1405	NM_182666	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
209257	chr7	75890221	75890900	+	0	NA	Intergenic	AluSz|SINE|Alu	11526	NM_001040456	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
226954	chr9	79695571	79696030	+	0	NA	intron (NR_104239, intron 9 of 20)	L2b|LINE|L2	122623	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
133508	chr2	119983151	119983250	+	0	NA	3' UTR (NM_002830, exon 27 of 27)	3' UTR (NM_002830, exon 27 of 27)	-29877	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
216901	chr8	22689601	22690200	+	0	NA	3' UTR (NM_001199881, exon 2 of 2)	3' UTR (NM_001199881, exon 2 of 2)	2464	NM_001199880	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
128308	chr2	54641571	54641930	+	0	NA	intron (NM_178313, intron 17 of 30)	intron (NM_178313, intron 17 of 30)	-83262	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
69693	chr14	98171401	98171880	+	0	NA	Intergenic	Intergenic	-193516	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
91217	chr17	3924471	3924850	+	0	NA	3' UTR (NM_005173, exon 21 of 21)	3' UTR (NM_005173, exon 21 of 21)	-8195	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
125383	chr2	11341321	11341580	+	0	NA	intron (NM_001321643, intron 1 of 32)	MIRb|SINE|MIR	3186	NM_004850	9475		NM_004850	ENSG00000134318	ROCK2	ROCK-II	Rho associated coiled-coil containing protein kinase 2	protein-coding
10118	chr1	59146421	59147300	+	0	NA	promoter-TSS (NR_027120)	promoter-TSS (NR_027120)	-53	NR_027120	729467		NR_027120	ENSG00000224609	HSD52	-	uncharacterized LOC729467	ncRNA
154449	chr22	35393871	35394430	+	0	NA	TTS (NM_002133)	TTS (NM_002133)	-5990	NM_006739	4174		NM_006739	ENSG00000100297	MCM5	CDC46|MGORS8|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
45382	chr11	118311921	118313030	+	0	NA	intron (NM_000733, intron 5 of 8)	intron (NM_000733, intron 5 of 8)	7745	NM_000733	916		NM_000733	ENSG00000198851	CD3E	CD3epsilon|IMD18|T3E|TCRE	CD3 epsilon subunit of T-cell receptor complex	protein-coding
29275	chr10	69186401	69187000	+	0	NA	intron (NM_001301683, intron 4 of 15)	intron (NM_001301683, intron 4 of 15)	6466	NM_001323587	6832		NM_003171	ENSG00000156502	SUPV3L1	SUV3	Suv3 like RNA helicase	protein-coding
147332	chr20	58192601	58192880	+	0	NA	Intergenic	Intergenic	35913	NM_001304369	140731		NM_080674	ENSG00000124227	ANKRD60	C20orf86|bA196N14.3	ankyrin repeat domain 60	protein-coding
54237	chr12	81942571	81942930	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-10969	NR_110089	101928449		NR_110089	ENSG00000257747	LINC02426	-	long intergenic non-protein coding RNA 2426	ncRNA
18492	chr1	161658571	161658730	+	0	NA	Intergenic	Intergenic	-4465	NM_004001	2213		NM_004001	ENSG00000072694	FCGR2B	CD32|CD32B|FCG2|FCGR2|FCGR2C|FcGRIIB|FcRII-c|FcgammaRIIb|IGFR2	Fc gamma receptor IIb	protein-coding
229500	chr9	122227221	122227600	+	0	NA	exon (NM_001242333, exon 2 of 9)	exon (NM_001242333, exon 2 of 9)	131	NM_001242334	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
109054	chr18	79807371	79807900	+	0	NA	Intergenic	CpG	-56033	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
184828	chr5	111310471	111311030	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	86366	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
226703	chr9	75120651	75120750	+	0	NA	intron (NM_012383, intron 2 of 9)	intron (NM_012383, intron 2 of 9)	32186	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
68266	chr14	77038801	77039080	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-2109	NR_110554	283575		NR_110554	ENSG00000246548	LINC02288	-	long intergenic non-protein coding RNA 2288	ncRNA
127794	chr2	44235801	44236630	+	0	NA	Intergenic	AluSz|SINE|Alu	-39265	NM_000341	6519		NM_000341	ENSG00000138079	SLC3A1	ATR1|CSNU1|D2H|NBAT|RBAT	solute carrier family 3 member 1	protein-coding
172122	chr4	1174001	1174430	+	0	NA	intron (NM_001199021, intron 2 of 7)	AluJb|SINE|Alu	-1004	NM_001128325	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
134040	chr2	131111801	131112200	+	0	NA	intron (NM_001309448, intron 1 of 6)	MER21B|LTR|ERVL	7153	NM_001100623	55041		NM_017958	ENSG00000115762	PLEKHB2	EVT2	pleckstrin homology domain containing B2	protein-coding
9751	chr1	53311351	53311650	+	0	NA	intron (NM_017522, intron 2 of 15)	intron (NM_017522, intron 2 of 15)	16570	NM_001018054	7804		NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding
58807	chr12	132806951	132807250	+	0	NA	intron (NM_005895, intron 6 of 23)	intron (NM_005895, intron 6 of 23)	21289	NM_005895	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
231125	chr9	129833601	129833800	+	0	NA	exon (NM_016520, exon 3 of 9)	exon (NM_016520, exon 3 of 9)	1575	NM_016520	51759		NM_016520	ENSG00000136819	C9orf78	CSU2|HCA59|HSPC220|TLS1|bA409K20.3	chromosome 9 open reading frame 78	protein-coding
24678	chr1	247129071	247129700	+	0	NA	intron (NM_001243740, intron 3 of 3)	intron (NM_001243740, intron 3 of 3)	-16968	NR_167894	388759		NM_207401	ENSG00000221953	LINC02897	C1orf229	long intergenic non-protein coding RNA 2897	ncRNA
200075	chr6	130131621	130133230	+	0	NA	intron (NM_001007102, intron 19 of 21)	L1ME3A|LINE|L1	83460	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
213522	chr7	139078801	139079350	+	0	NA	intron (NM_020119, intron 4 of 12)	intron (NM_020119, intron 4 of 12)	30645	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
38124	chr11	35244321	35244580	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	81500	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
202373	chr6	157817151	157817450	+	0	NA	Intergenic	MIRb|SINE|MIR	-5946	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
73349	chr15	42137601	42138000	+	0	NA	Intergenic	Intergenic	18836	NM_213600	255189		NM_213600	ENSG00000168907	PLA2G4F	PLA2G4FZ	phospholipase A2 group IVF	protein-coding
119856	chr19	41427351	41428750	+	0	NA	promoter-TSS (NM_001385648)	promoter-TSS (NM_001385648)	-57	NM_001385648	374907		NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
221208	chr8	120807401	120807800	+	0	NA	intron (NM_021021, intron 1 of 6)	intron (NM_021021, intron 1 of 6)	4446	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
118773	chr19	38384871	38385130	+	0	NA	intron (NM_152657, intron 3 of 3)	intron (NM_152657, intron 3 of 3)	3034	NM_152657	199720		NM_152657	ENSG00000179168	GGN	-	gametogenetin	protein-coding
1186	chr1	2236321	2236580	+	0	NA	intron (NM_003036, intron 1 of 6)	AluSc8|SINE|Alu	8131	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
168439	chr3	142597921	142598350	+	0	NA	intron (NM_001145319, intron 1 of 15)	L2c|LINE|L2	1742	NM_001145319	5357		NM_002670	ENSG00000120756	PLS1	DFNA76	plastin 1	protein-coding
49765	chr12	31801701	31802400	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-9752	NM_001013699	440093		NM_001013699	ENSG00000188375	H3-5	H3.3C|H3.5|H3F3C	H3.5 histone	protein-coding
174593	chr4	40254251	40254350	+	0	NA	Intergenic	Intergenic	-52885	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
99626	chr17	50565021	50565280	+	0	NA	intron (NM_198376, intron 1 of 34)	(AC)n|Simple_repeat|Simple_repeat	-3042	NR_038439	253962		NR_038439	ENSG00000250107	CACNA1G-AS1	CAS1	CACNA1G antisense RNA 1	ncRNA
57401	chr12	121826451	121827080	+	0	NA	intron (NM_001353345, intron 13 of 16)	intron (NM_001353345, intron 13 of 16)	22756	NM_001353345	23067		NM_015048	ENSG00000139718	SETD1B	IDDSELD|KMT2G|Set1B	SET domain containing 1B, histone lysine methyltransferase	protein-coding
199065	chr6	111605421	111606880	+	0	NA	promoter-TSS (NM_147200)	promoter-TSS (NM_147200)	124	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
57895	chr12	123448021	123449430	+	0	NA	Intergenic	L1MB2|LINE|L1	-9414	NR_104103	11066		NM_007020	ENSG00000184209	SNRNP35	HM-1|HM1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding
138721	chr2	213147521	213148030	+	0	NA	exon (NM_001079526, exon 4 of 9)	exon (NM_001079526, exon 4 of 9)	2662	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
204220	chr7	2527771	2528700	+	0	NA	3' UTR (NM_001040167, exon 8 of 8)	3' UTR (NM_001040167, exon 8 of 8)	1161	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
2322	chr1	9128421	9131500	+	0	NA	promoter-TSS (NM_024980)	promoter-TSS (NM_024980)	-858	NM_024980	80045		NM_024980	ENSG00000180758	GPR157	-	G protein-coupled receptor 157	protein-coding
92109	chr17	7582121	7582380	+	0	NA	TTS (NM_001251)	TTS (NM_001251)	1268	NR_136403	100996842		NM_001322800	ENSG00000233223	MPDU1-AS1	-	MPDU1 antisense RNA 1	ncRNA
225213	chr9	34155601	34155880	+	0	NA	Intergenic	MER67B|LTR|ERV1	-23265	NM_001171201	51271		NM_016525	ENSG00000165006	UBAP1	NAG20|SPG80|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding
202079	chr6	154251001	154251200	+	0	NA	intron (NM_001130700, intron 3 of 11)	intron (NM_001130700, intron 3 of 11)	78981	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
132077	chr2	101274751	101275350	+	0	NA	TTS (NM_173647)	TTS (NM_173647)	-2001	NR_003070	692205		NR_003070	ENSG00000212283	SNORD89	HBII-289	small nucleolar RNA, C/D box 89	snoRNA
19366	chr1	173867161	173869180	+	0	NA	promoter-TSS (NM_001122770)	promoter-TSS (NM_001122770)	88	NM_001369846	84614		NM_032522	ENSG00000185278	ZBTB37	D430004I08Rik|ZNF908	zinc finger and BTB domain containing 37	protein-coding
43470	chr11	78186171	78186680	+	0	NA	intron (NM_001029859, intron 1 of 1)	MIRb|SINE|MIR	2201	NM_001029859	283219		NM_001029859	ENSG00000188997	KCTD21	KCASH2	potassium channel tetramerization domain containing 21	protein-coding
4073	chr1	19070471	19070830	+	0	NA	Intergenic	Intergenic	-113974	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
49790	chr12	31933471	31933780	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-25790	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
225982	chr9	41234421	41235850	+	0	NA	Intergenic	CpG	-1300	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA
97743	chr17	44389621	44390650	+	0	NA	promoter-TSS (NM_000419)	promoter-TSS (NM_000419)	-486	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
57860	chr12	123358651	123359150	+	0	NA	intron (NM_018183, intron 1 of 31)	MER112|DNA|hAT-Charlie	5943	NR_107039	102466877		NR_107039	ENSG00000284425	MIR8072	hsa-mir-8072	microRNA 8072	ncRNA
172297	chr4	1572371	1572530	+	0	NA	Intergenic	Intergenic	111541	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
72206	chr15	30171601	30171800	+	0	NA	Intergenic	Intergenic	-24336	NR_026771	26082		NR_026771	ENSG00000225930	LINC02249	DKFZP434L187	long intergenic non-protein coding RNA 2249	ncRNA
16657	chr1	155171521	155171830	+	0	NA	intron (NM_173852, intron 3 of 4)	AluJb|SINE|Alu	1629	NM_173852	200185		NM_173852	ENSG00000163463	KRTCAP2	KCP2	keratinocyte associated protein 2	protein-coding
189999	chr5	177467951	177469730	+	0	NA	intron (NM_004395, intron 2 of 13)	intron (NM_004395, intron 2 of 13)	4030	NM_080881	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
232274	chr9	134429551	134430050	+	0	NA	intron (NM_001291921, intron 6 of 8)	intron (NM_001291921, intron 6 of 8)	23240	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
201621	chr6	149435971	149436330	+	0	NA	Intergenic	Intergenic	35888	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
145871	chr20	45938671	45939230	+	0	NA	intron (NM_022104, intron 2 of 16)	intron (NM_022104, intron 2 of 16)	4267	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
177242	chr4	108626671	108626830	+	0	NA	intron (NM_033625, intron 5 of 5)	intron (NM_033625, intron 5 of 5)	6121	NM_001319234	6164		NM_000995	ENSG00000109475	RPL34	L34|eL34	ribosomal protein L34	protein-coding
135262	chr2	159738321	159739000	+	0	NA	intron (NM_001282807, intron 1 of 8)	MER52A|LTR|ERV1	4696	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
23053	chr1	226622671	226623230	+	0	NA	Intergenic	AluJb|SINE|Alu	52118	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
90845	chr17	2351351	2351900	+	0	NA	intron (NM_001346700, intron 2 of 22)	intron (NM_001346700, intron 2 of 22)	14124	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
235551	chrX	47246771	47247530	+	0	NA	exon (NM_001371072, exon 18 of 21)	exon (NM_001371072, exon 18 of 21)	14141	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
51242	chr12	50960171	50960330	+	0	NA	intron (NM_001109619, intron 3 of 4)	Tigger12c|DNA|TcMar-Tigger	7706	NM_001109619	613227		NM_001109619	ENSG00000214511	HIGD1C	GM921	HIG1 hypoxia inducible domain family member 1C	protein-coding
118674	chr19	37718951	37720000	+	0	NA	promoter-TSS (NM_001172677)	promoter-TSS (NM_001172677)	286	NM_001375895	84775		NM_032689	ENSG00000198182	ZNF607	-	zinc finger protein 607	protein-coding
29622	chr10	71771101	71771380	+	0	NA	intron (NM_022153, intron 1 of 6)	intron (NM_022153, intron 1 of 6)	2280	NM_022153	64115		NM_022153	ENSG00000107738	VSIR	B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA	V-set immunoregulatory receptor	protein-coding
25501	chr10	7134501	7134700	+	0	NA	Intergenic	Intergenic	52184	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
137179	chr2	191127301	191127580	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	23554	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
21509	chr1	205765871	205766230	+	0	NA	Intergenic	AluJb|SINE|Alu	9432	NM_001135663	8934		NM_003929	ENSG00000117280	RAB29	RAB7L|RAB7L1	RAB29, member RAS oncogene family	protein-coding
207177	chr7	43611051	43611150	+	0	NA	intron (NR_135582, intron 6 of 6)	AluSx1|SINE|Alu	27992	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
44159	chr11	96207121	96208450	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-133653	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
125089	chr2	9706301	9706500	+	0	NA	Intergenic	Intergenic	-75403	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
155345	chr22	38232501	38232700	+	0	NA	intron (NM_001195071, intron 3 of 8)	intron (NM_001195071, intron 3 of 8)	-7880	NR_132774	106635525		NR_132774		SNORA92	-	small nucleolar RNA, H/ACA box 92	snoRNA
205964	chr7	26161451	26161850	+	0	NA	intron (NM_004289, intron 1 of 3)	MIRc|SINE|MIR	9452	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
180512	chr5	14369671	14370030	+	0	NA	intron (NR_134469, intron 18 of 56)	intron (NR_134469, intron 18 of 56)	-94133	NR_145815	109623458		NR_145815		SNORD170	-	small nucleolar RNA, C/D box 170	snoRNA
155870	chr22	39489771	39490750	+	0	NA	3' UTR (NM_002409, exon 2 of 2)	3' UTR (NM_002409, exon 2 of 2)	3036	NM_001098270	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
87116	chr16	68742511	68742650	+	0	NA	intron (NM_004360, intron 2 of 15)	AluSx|SINE|Alu	5288	NM_001317185	999		NM_004360	ENSG00000039068	CDH1	Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO	cadherin 1	protein-coding
220391	chr8	100244121	100244530	+	0	NA	Intergenic	Intergenic	57868	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
56130	chr12	111024201	111024480	+	0	NA	Intergenic	Intergenic	-9825	NM_015267	23316		NM_015267	ENSG00000111249	CUX2	CDP2|CUTL2|DEE67|EIEE67	cut like homeobox 2	protein-coding
216378	chr8	17881751	17882050	+	0	NA	intron (NM_201553, intron 4 of 8)	intron (NM_201553, intron 4 of 8)	13504	NM_201553	2267		NM_004467	ENSG00000104760	FGL1	HFREP1|HP-041|HPS|LFIRE-1|LFIRE1	fibrinogen like 1	protein-coding
128971	chr2	64655201	64656400	+	0	NA	Intergenic	Intergenic	-1887	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
117448	chr19	19668001	19671180	+	0	NA	intron (NM_033204, intron 1 of 3)	AluSx1|SINE|Alu	751	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
50793	chr12	49052401	49052800	+	0	NA	exon (NM_003482, exon 10 of 55)	exon (NM_003482, exon 10 of 55)	8194	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
102972	chr17	76718151	76718250	+	0	NA	TTS (NM_015167)	TTS (NM_015167)	-7235	NM_001008529	439921		NM_198530	ENSG00000182534	MXRA7	-	matrix remodeling associated 7	protein-coding
153684	chr22	29119751	29120630	+	0	NA	intron (NM_001039570, intron 3 of 8)	intron (NM_001039570, intron 3 of 8)	47155	NM_032045	83999		NM_032045	ENSG00000183762	KREMEN1	ECTD13|KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding
145377	chr20	41177421	41177880	+	0	NA	TTS (NM_002660)	TTS (NM_002660)	8627	NR_106931	102466912		NR_106931	ENSG00000276169	MIR6871	hsa-mir-6871	microRNA 6871	ncRNA
167118	chr3	127675351	127675650	+	0	NA	intron (NM_172027, intron 3 of 11)	AluJb|SINE|Alu	2548	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
218626	chr8	56189271	56189530	+	0	NA	intron (NM_002655, intron 1 of 4)	intron (NM_002655, intron 1 of 4)	21873	NM_001114635	5324		NM_002655	ENSG00000181690	PLAG1	PSA|SGPA|SRS4|ZNF912	PLAG1 zinc finger	protein-coding
118120	chr19	34732051	34732150	+	0	NA	Intergenic	Intergenic	-2143	NM_001145665	339318		NM_001029997	ENSG00000197841	ZNF181	HHZ181	zinc finger protein 181	protein-coding
68480	chr14	88002501	88003050	+	0	NA	Intergenic	Intergenic	-2360	NM_003608	8477		NM_003608	ENSG00000140030	GPR65	TDAG8|hTDAG8	G protein-coupled receptor 65	protein-coding
132226	chr2	102271751	102272100	+	0	NA	Intergenic	Intergenic	-39577	NM_001282408	9173		NM_003856	ENSG00000115602	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor like 1	protein-coding
185721	chr5	132060471	132060830	+	0	NA	promoter-TSS (NM_000588)	promoter-TSS (NM_000588)	-5	NM_000588	3562		NM_000588	ENSG00000164399	IL3	IL-3|MCGF|MULTI-CSF	interleukin 3	protein-coding
164924	chr3	71185901	71186350	+	0	NA	intron (NM_001244810, intron 6 of 20)	L2c|LINE|L2	-53928	NM_001349343	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
44357	chr11	102449851	102450250	+	0	NA	intron (NM_052932, intron 1 of 4)	L2|LINE|L2	2715	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
212844	chr7	130758421	130758930	+	0	NA	Intergenic	(ATTT)n|Simple_repeat|Simple_repeat	-24468	NM_138693	136259		NM_138693	ENSG00000266265	KLF14	BTEB5	KLF transcription factor 14	protein-coding
11438	chr1	89815771	89815930	+	0	NA	Intergenic	Intergenic	-5182	NM_001134479	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
224399	chr9	14326401	14326700	+	0	NA	intron (NM_001369468, intron 1 of 8)	intron (NM_001369468, intron 1 of 8)	-4163	NM_001369466	4781		NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
179000	chr4	163550071	163550700	+	0	NA	intron (NM_001166373, intron 6 of 7)	intron (NM_001166373, intron 6 of 7)	55695	NM_018352	55319		NM_018352	ENSG00000198498	TMA16	C4orf43	translation machinery associated 16 homolog	protein-coding
23786	chr1	233599071	233599430	+	0	NA	Intergenic	Intergenic	-14856	NM_002245	3775		NM_002245	ENSG00000135750	KCNK1	DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1	potassium two pore domain channel subfamily K member 1	protein-coding
43609	chr11	83176051	83176150	+	0	NA	intron (NM_015885, intron 9 of 15)	intron (NM_015885, intron 9 of 15)	11384	NR_133914	106736475		NR_133914		PCF11-AS1	-	PCF11 antisense RNA 1	ncRNA
220897	chr8	106060401	106060600	+	0	NA	promoter-TSS (NR_125797)	promoter-TSS (NR_125797)	3	NR_125796	102723356		NR_125796		ZFPM2-AS1	SCAT3	ZFPM2 antisense RNA 1	ncRNA
27584	chr10	32376671	32376830	+	0	NA	intron (NR_168507, intron 1 of 1)	intron (NR_168507, intron 1 of 1)	2019	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
1567	chr1	3533121	3533980	+	0	NA	intron (NM_001409, intron 4 of 36)	intron (NM_001409, intron 4 of 36)	27240	NR_030277	693135		NR_030277	ENSG00000207776	MIR551A	MIRN551A|mir-551a	microRNA 551a	ncRNA
237968	chrX	133922001	133922200	+	0	NA	intron (NM_001164619, intron 1 of 6)	intron (NM_001164619, intron 1 of 6)	24657	NR_148713	110806308		NR_148713	ENSG00000286096	GPC3-AS1	-	GPC3 antisense RNA 1	ncRNA
93991	chr17	21988571	21989150	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-214135	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
156673	chr22	41653751	41654250	+	0	NA	intron (NM_001288976, intron 9 of 12)	intron (NM_001288976, intron 9 of 12)	32705	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
12193	chr1	100379001	100379680	+	0	NA	intron (NM_001319210, intron 3 of 16)	intron (NM_001319210, intron 3 of 16)	26834	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
121838	chr19	48167701	48167900	+	0	NA	intron (NR_135497, intron 1 of 27)	AluSx3|SINE|Alu	2544	NR_135497	3978		NM_000234	ENSG00000105486	LIG1	IMD96|LIGI|hLig1	DNA ligase 1	protein-coding
166886	chr3	124550351	124550680	+	0	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-34143	NM_001322993	8997		NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|KALNC2|TRAD	kalirin RhoGEF kinase	protein-coding
47627	chr12	6167401	6168080	+	0	NA	Intergenic	MIRb|SINE|MIR	-32206	NM_001330312	928		NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding
170484	chr3	186003021	186003280	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	43207	NR_151491	344887		NR_033752	ENSG00000290862	NMRAL2P	NMRAL1P1	NmrA like redox sensor 2, pseudogene	pseudo
179281	chr4	177047321	177047680	+	0	NA	Intergenic	Intergenic	171798	NR_149104	105377556		NR_149104	ENSG00000250263	LINC02509	-	long intergenic non-protein coding RNA 2509	ncRNA
151155	chr21	44924651	44925550	+	0	NA	intron (NR_038311, intron 2 of 4)	L1ME3Cz|LINE|L1	3715	NM_001127491	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
154476	chr22	35616021	35616600	+	0	NA	intron (NM_001382813, intron 1 of 2)	intron (NM_001382813, intron 1 of 2)	1019	NM_005368	4151		NM_005368	ENSG00000198125	MB	MYOSB|PVALB	myoglobin	protein-coding
127288	chr2	38736651	38737630	+	0	NA	Intergenic	AluSg7|SINE|Alu	14221	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
16912	chr1	155885721	155886180	+	0	NA	TTS (NM_152280)	TTS (NM_152280)	24968	NM_001256821	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
83735	chr16	28609601	28610880	+	0	NA	promoter-TSS (NM_001055)	promoter-TSS (NM_001055)	-196	NM_177529	6817		NM_001055	ENSG00000196502	SULT1A1	HAST1/HAST2|P-PST|P-PST 1|PST|ST1A1|ST1A3|STP|STP1|TSPST1|ts-PST	sulfotransferase family 1A member 1	protein-coding
220436	chr8	100304801	100305850	+	0	NA	intron (NM_001280539, intron 2 of 10)	intron (NM_001280539, intron 2 of 10)	-2066	NM_015435	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
175198	chr4	56627201	56627480	+	0	NA	Intergenic	Intergenic	29182	NM_139211	84525		NM_032495	ENSG00000171476	HOPX	CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO	HOP homeobox	protein-coding
158032	chr22	49924451	49924880	+	0	NA	intron (NM_001135101, intron 9 of 10)	intron (NM_001135101, intron 9 of 10)	6031	NM_001135101	79174		NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding
92307	chr17	8121421	8122700	+	0	NA	intron (NM_001165967, intron 3 of 3)	CpG	2046	NM_032580	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
55484	chr12	104722821	104723150	+	0	NA	intron (NM_018413, intron 2 of 2)	intron (NM_018413, intron 2 of 2)	131352	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
188262	chr5	151084351	151084600	+	0	NA	intron (NM_001252390, intron 1 of 17)	MIR3|SINE|MIR	2691	NM_001252391	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
153783	chr22	29588051	29588700	+	0	NA	Intergenic	AluJo|SINE|Alu	-7262	NM_003634	8508		NM_003634	ENSG00000184117	NIPSNAP1	-	nipsnap homolog 1	protein-coding
181963	chr5	55095771	55096500	+	0	NA	Intergenic	Intergenic	-6511	NM_006144	3001		NM_006144	ENSG00000145649	GZMA	CTLA3|HFSP	granzyme A	protein-coding
65766	chr14	54398901	54399500	+	0	NA	intron (NM_001130851, intron 1 of 6)	AluSx|SINE|Alu	2193	NM_005192	1033		NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
93782	chr17	20270701	20271780	+	0	NA	intron (NM_001033555, intron 10 of 12)	HAL1|LINE|L1	-49934	NR_023380	348254		NR_023380		CCDC144CP	CCDC144C	coiled-coil domain containing 144C, pseudogene	pseudo
3203	chr1	13752821	13753150	+	0	NA	intron (NM_001135610, intron 6 of 7)	intron (NM_001135610, intron 6 of 7)	3570	NM_001007257	7799		NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding
5680	chr1	26345951	26346450	+	0	NA	exon (NM_001039775, exon 2 of 20)	exon (NM_001039775, exon 2 of 20)	7930	NM_001039775	55057		NM_017977	ENSG00000176092	CRYBG2	AIM1L	crystallin beta-gamma domain containing 2	protein-coding
165260	chr3	74669451	74669550	+	0	NA	Intergenic	Intergenic	-148360	NM_020872	5067		NM_020872	ENSG00000113805	CNTN3	BIG-1|PANG|PCS	contactin 3	protein-coding
63352	chr13	114032551	114033100	+	0	NA	intron (NM_001320822, intron 4 of 23).2	CpG	45130	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
62832	chr13	109775221	109775880	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	11033	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
156774	chr22	41893601	41893800	+	0	NA	intron (NR_103834, intron 13 of 21)	L2c|LINE|L2	-7244	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
110825	chr19	2486021	2486480	+	0	NA	Intergenic	Intergenic	10123	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
99448	chr17	50135771	50136250	+	0	NA	exon (NM_032595, exon 8 of 10)	exon (NM_032595, exon 8 of 10)	-5850	NM_174920	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
123745	chr19	55069001	55070400	+	0	NA	promoter-TSS (NM_138412).5	promoter-TSS (NM_138412).5	-180	NM_138412	112724		NM_138412	ENSG00000160439	RDH13	SDR7C3	retinol dehydrogenase 13	protein-coding
73147	chr15	41401301	41401500	+	0	NA	intron (NR_045620, intron 1 of 5)	AluSx1|SINE|Alu	1096	NR_045620	51103		NM_016013	ENSG00000137806	NDUFAF1	CGI-65|CGI65|CIA30|MC1DN11	NADH:ubiquinone oxidoreductase complex assembly factor 1	protein-coding
21421	chr1	205318301	205318500	+	0	NA	intron (NM_030952, intron 1 of 6)	intron (NM_030952, intron 1 of 6)	3345	NM_030952	81788		NM_030952	ENSG00000163545	NUAK2	ANPH2|SNARK	NUAK family kinase 2	protein-coding
72723	chr15	38685721	38686450	+	0	NA	Intergenic	Intergenic	-10513	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
25429	chr10	6576171	6576980	+	0	NA	intron (NM_001323265, intron 1 of 17)	L1MB3|LINE|L1	3701	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
144778	chr20	36627601	36628800	+	0	NA	intron (NM_175077, intron 5 of 7)	MER5A|DNA|hAT-Charlie	17996	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
136756	chr2	181312551	181313480	+	0	NA	intron (NR_130784, intron 3 of 4)	intron (NR_130784, intron 3 of 4)	-7363	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
122594	chr19	49738921	49739330	+	0	NA	TTS (NM_021733)	TTS (NM_021733)	24181	NM_021733	60385		NM_021733	ENSG00000126467	TSKS	PPP1R161|STK22S1|TSKS1|TSSKS	testis specific serine kinase substrate	protein-coding
237640	chrX	124216921	124219380	+	0	NA	Intergenic	Intergenic	-114510	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
22932	chr1	225959101	225959900	+	0	NA	Intergenic	MIR|SINE|MIR	-18008	NM_001172425	7044		NM_003240	ENSG00000143768	LEFTY2	EBAF|LEFTA|LEFTYA|TGFB4	left-right determination factor 2	protein-coding
121467	chr19	47078471	47078730	+	0	NA	intron (NM_015168, intron 11 of 14)	AluSq2|SINE|Alu	-29976	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
137146	chr2	191056221	191056930	+	0	NA	intron (NM_003151, intron 13 of 23)	intron (NM_003151, intron 13 of 23)	35049	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
175166	chr4	55853351	55854550	+	0	NA	5' UTR (NM_001024924, exon 1 of 19)	5' UTR (NM_001024924, exon 1 of 19)	300	NM_178237	55763		NM_018261	ENSG00000090989	EXOC1	BM-102|SEC3|SEC3L1|SEC3P	exocyst complex component 1	protein-coding
29755	chr10	72218171	72218330	+	0	NA	intron (NM_001366791, intron 1 of 3)	MER85|DNA|PiggyBac	-1116	NM_001369099	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
186574	chr5	138488551	138489200	+	0	NA	Intergenic	MIRb|SINE|MIR	23396	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
115427	chr19	15307971	15308550	+	0	NA	intron (NM_001379291, intron 1 of 19)	7SLRNA|srpRNA|srpRNA	24279	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
205132	chr7	7104271	7104430	+	0	NA	Intergenic	Intergenic	-7564	NR_034022	100131257		NR_034022		LOC100131257	-	zinc finger protein 655 pseudogene	pseudo
109440	chr19	732421	733030	+	0	NA	intron (NM_002579, intron 5 of 8)	intron (NM_002579, intron 5 of 8)	-18387	NM_173481	126353		NM_173481	ENSG00000099812	MISP	C19orf21|MISP1	mitotic spindle positioning	protein-coding
56721	chr12	120112121	120113030	+	0	NA	intron (NM_006861, intron 1 of 5)	AluJo|SINE|Alu	4178	NM_001167606	11021		NM_006861	ENSG00000111737	RAB35	H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding
159244	chr3	12924451	12925230	+	0	NA	intron (NM_014869, intron 3 of 13)	intron (NM_014869, intron 3 of 13)	-39629	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
183583	chr5	80179021	80179480	+	0	NA	intron (NM_001174072, intron 2 of 11)	AluSx|SINE|Alu	76798	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
110547	chr19	2099151	2099330	+	0	NA	intron (NM_001039846, intron 9 of 9)	intron (NM_001039846, intron 9 of 9)	2325	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
13200	chr1	112631821	112632680	+	0	NA	intron (NM_006135, intron 1 of 9)	AluSx1|SINE|Alu	12418	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
134454	chr2	143179221	143179480	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	49931	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
112829	chr19	7526101	7526930	+	0	NA	exon (NM_020533, exon 3 of 14)	exon (NM_020533, exon 3 of 14)	3891	NM_020533	57192		NM_020533	ENSG00000090674	MCOLN1	LECD|MG-2|ML1|ML4|MLIV|MST080|MSTP080|TRP-ML1|TRPM-L1|TRPML1	mucolipin TRP cation channel 1	protein-coding
74262	chr15	57079501	57079700	+	0	NA	intron (NM_001322156, intron 5 of 21)	intron (NM_001322156, intron 5 of 21)	-139830	NM_001306220	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
224093	chr9	4486271	4486830	+	0	NA	Intergenic	LTR29|LTR|ERV1	-3918	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
189670	chr5	176390271	176390580	+	0	NA	TTS (NM_138820)	TTS (NM_138820)	-1498	NM_001256539	51491		NM_016391	ENSG00000048162	NOP16	HSPC111|HSPC185	NOP16 nucleolar protein	protein-coding
72881	chr15	40308501	40309400	+	0	NA	Intergenic	Intergenic	-1015	NM_001284297	5330		NM_004573	ENSG00000137841	PLCB2	PLC-beta-2	phospholipase C beta 2	protein-coding
164199	chr3	56861921	56862300	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	54326	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
145520	chr20	44068551	44069900	+	0	NA	3' UTR (NM_001098796, exon 9 of 9)	3' UTR (NM_001098796, exon 9 of 9)	117963	NM_020433	57158		NM_020433	ENSG00000149596	JPH2	CMD2E|CMH17|JP-2|JP2	junctophilin 2	protein-coding
225495	chr9	35653371	35654480	+	0	NA	Intergenic	AluJo|SINE|Alu	-2994	NM_014450	27240		NM_014450	ENSG00000137078	SIT1	SIT|SIT-R	signaling threshold regulating transmembrane adaptor 1	protein-coding
35112	chr11	662671	663280	+	0	NA	intron (NM_001293634, intron 8 of 10)	intron (NM_001293634, intron 8 of 10)	25706	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
1865	chr1	6416971	6417530	+	0	NA	3' UTR (NM_019089, exon 4 of 4)	3' UTR (NM_019089, exon 4 of 4)	2669	NM_019089	54626		NM_019089	ENSG00000069812	HES2	bHLHb40	hes family bHLH transcription factor 2	protein-coding
202046	chr6	153312651	153312750	+	0	NA	Intergenic	Intergenic	-181418	NM_012419	26575		NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G protein signaling 17	protein-coding
150441	chr21	42449701	42450500	+	0	NA	Intergenic	Intergenic	46124	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
78045	chr15	90061951	90063250	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	19607	NR_146321	109729181		NR_146321	ENSG00000259291	ZNF710-AS1	-	ZNF710 antisense RNA 1	ncRNA
166507	chr3	114324901	114325100	+	0	NA	non-coding (NR_121662, exon 7 of 7)	non-coding (NR_121662, exon 7 of 7)	-8431	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
92936	chr17	16916101	16916300	+	0	NA	Intergenic	Intergenic	16976	NR_147084	96597		NR_147084		TBC1D27P	TBC1D27	TBC1 domain family member 27, pseudogene	pseudo
197403	chr6	73512501	73513400	+	0	NA	Intergenic	AluSc|SINE|Alu	5488	NR_132980	106635683		NR_132980		SNORD141A	-	small nucleolar RNA, C/D box 141A	snoRNA
227318	chr9	89435201	89435900	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	44340	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
71316	chr14	105388551	105388650	+	0	NA	intron (NM_001100913, intron 19 of 24)	intron (NM_001100913, intron 19 of 24)	-9938	NM_001195082	647310		NM_001195082	ENSG00000226174	TEX22	-	testis expressed 22	protein-coding
43063	chr11	74453421	74453680	+	0	NA	Intergenic	Intergenic	13999	NM_005472	10008		NM_005472	ENSG00000175538	KCNE3	BRGDA6|HOKPP|HYPP|MiRP2	potassium voltage-gated channel subfamily E regulatory subunit 3	protein-coding
164042	chr3	53306601	53306800	+	0	NA	intron (NM_001290205, intron 6 of 10)	AluY|SINE|Alu	26427	NR_145715	109617024		NR_145715	ENSG00000207109	SNORD38C	-	small nucleolar RNA, C/D box 38C	snoRNA
191395	chr6	8017421	8017680	+	0	NA	intron (NM_001199322, intron 5 of 5)	intron (NM_001199322, intron 5 of 5)	31448	NR_027712	206426		NM_152700		PIP5K1P1	-	phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1	pseudo
52718	chr12	56596951	56597050	+	0	NA	TTS (NM_002898)	TTS (NM_002898)	33326	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
74591	chr15	60563521	60564930	+	0	NA	intron (NM_134260, intron 1 of 11)	MIRb|SINE|MIR	28301	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
47974	chr12	6881921	6882580	+	0	NA	non-coding (NR_135083, exon 2 of 4)	non-coding (NR_135083, exon 2 of 4)	-1731	NR_002803	283345		NR_002803	ENSG00000240370	RPL13P5	RPL13-2|RPL13L|RPL13_4_1199|RRPL13L	ribosomal protein L13 pseudogene 5	pseudo
56883	chr12	120300401	120300700	+	0	NA	intron (NM_001385735, intron 1 of 3)	AluJo|SINE|Alu	-1771	NM_001385734	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
24169	chr1	235874121	235874480	+	0	NA	intron (NM_001301365, intron 1 of 52)	intron (NM_001301365, intron 1 of 52)	-7394	NM_000081	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
173641	chr4	13529851	13530250	+	0	NA	intron (NR_034054, intron 1 of 3)	(GT)n|Simple_repeat|Simple_repeat	1367	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
53507	chr12	66697601	66697800	+	0	NA	intron (NM_001379351, intron 1 of 22)	intron (NM_001379351, intron 1 of 22)	-18624	NM_001178074	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
237996	chrX	134761951	134762130	+	0	NA	intron (NM_001316887, intron 1 of 3)	L1ME3A|LINE|L1	2282	NM_001316887	10761		NM_021796	ENSG00000170965	PLAC1	CT92|OOSP2B|OOSP2L	placenta enriched 1	protein-coding
140440	chr2	233144071	233145200	+	0	NA	intron (NM_001017915, intron 6 of 26).2	(GTGATG)n|Simple_repeat|Simple_repeat	84293	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
72188	chr15	29925951	29926050	+	0	NA	intron (NM_001355012, intron 2 of 28).3	intron (NM_001355012, intron 2 of 28).3	43049	NM_001301025	7082		NM_003257	ENSG00000104067	TJP1	ZO-1	tight junction protein 1	protein-coding
31085	chr10	89217601	89218100	+	0	NA	intron (NM_001288979, intron 6 of 7)	intron (NM_001288979, intron 6 of 7)	-10533	NM_003956	9023		NM_003956	ENSG00000138135	CH25H	C25H	cholesterol 25-hydroxylase	protein-coding
155521	chr22	38693421	38694130	+	0	NA	intron (NM_014876, intron 2 of 4)	intron (NM_014876, intron 2 of 4)	7168	NM_001360236	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
57529	chr12	122142901	122143100	+	0	NA	3' UTR (NM_014938, exon 17 of 17)	3' UTR (NM_014938, exon 17 of 17)	-24719	NM_152759	254050		NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
7981	chr1	37922751	37923480	+	0	NA	intron (NR_158630, intron 7 of 24)	intron (NR_158630, intron 7 of 24)	8624	NM_001297434	3633		NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding
20710	chr1	200741521	200741980	+	0	NA	intron (NM_203459, intron 1 of 16)	intron (NM_203459, intron 1 of 16)	2178	NM_203459	23271		NM_203459	ENSG00000118200	CAMSAP2	CAMSAP1L1	calmodulin regulated spectrin associated protein family member 2	protein-coding
147717	chr20	62369901	62370350	+	0	NA	Intergenic	Intergenic	-2813	NM_005560	3911		NM_005560	ENSG00000130702	LAMA5	BBDS2|NPHS26	laminin subunit alpha 5	protein-coding
230489	chr9	128241921	128242280	+	0	NA	intron (NM_001374269, intron 14 of 21)	intron (NM_001374269, intron 14 of 21)	2730	NR_029619	406978		NR_029619	ENSG00000207581	MIR199B	MIRN199B|mir-199b	microRNA 199b	ncRNA
100487	chr17	61810021	61810280	+	0	NA	intron (NM_032043, intron 6 of 19)	intron (NM_032043, intron 6 of 19)	53378	NM_032043	83990		NM_032043	ENSG00000136492	BRIP1	BACH1|FANCJ|OF	BRCA1 interacting helicase 1	protein-coding
177126	chr4	108104801	108105350	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	61722	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
236261	chrX	65891951	65892280	+	0	NA	Intergenic	L1PA6|LINE|L1	-126755	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
117467	chr19	19731521	19731880	+	0	NA	intron (NM_021030, intron 1 of 3)	intron (NM_021030, intron 1 of 3)	1412	NM_021030	7561		NM_021030	ENSG00000105708	ZNF14	GIOT-4|KOX6	zinc finger protein 14	protein-coding
98201	chr17	46128271	46129130	+	0	NA	intron (NM_015443, intron 2 of 14).2	L2a|LINE|L2	64082	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
136552	chr2	177397251	177398130	+	0	NA	intron (NM_003659, intron 1 of 19)	intron (NM_003659, intron 1 of 19)	4917	NM_003659	8540		NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3	alkylglycerone phosphate synthase	protein-coding
94138	chr17	28318351	28319630	+	0	NA	promoter-TSS (NM_014573)	promoter-TSS (NM_014573)	-210	NM_014573	27346		NM_014573	ENSG00000109084	TMEM97	MAC30|S2R|sigma2R	transmembrane protein 97	protein-coding
38302	chr11	43677521	43678180	+	0	NA	Intergenic	L1PA5|LINE|L1	-2888	NM_016142	51144		NM_016142	ENSG00000149084	HSD17B12	KAR|SDR12C1	hydroxysteroid 17-beta dehydrogenase 12	protein-coding
71123	chr14	104965751	104966380	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	4442	NM_001350929	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
64977	chr14	37594571	37595330	+	0	NA	promoter-TSS (NM_001310135)	promoter-TSS (NM_001310135)	299	NM_004496	3169		NM_004496	ENSG00000129514	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding
42997	chr11	73967571	73967930	+	0	NA	intron (NM_153614, intron 5 of 7)	AluJo|SINE|Alu	15093	NM_001381943	7351		NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding
38971	chr11	47551301	47551860	+	0	NA	intron (NM_001376458, intron 1 of 13)	intron (NM_001376458, intron 1 of 13)	1552	NM_001376436	10658		NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP Elav-like family member 1	protein-coding
116783	chr19	18512421	18513230	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	9245	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
4241	chr1	19561151	19561650	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	35432	NR_135054	105378614		NR_135054	ENSG00000235185	MICOS10-DT	-	MICOS10 divergent transcript	ncRNA
119580	chr19	40687121	40688180	+	0	NA	intron (NM_004756, intron 1 of 9)	intron (NM_004756, intron 1 of 9)	2514	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
209081	chr7	74815721	74816180	+	0	NA	intron (NM_173537, intron 8 of 15)	intron (NM_173537, intron 8 of 15)	34175	NM_001368300	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
142336	chr20	3709421	3709680	+	0	NA	intron (NM_023068, intron 1 of 21)	L1MB4|LINE|L1	-2316	NM_001367089	6614		NM_023068	ENSG00000088827	SIGLEC1	CD169|SIGLEC-1|SN	sialic acid binding Ig like lectin 1	protein-coding
229557	chr9	122942701	122943100	+	0	NA	intron (NM_012197, intron 1 of 25)	FRAM|SINE|Alu	1880	NM_012197	23637		NM_012197	ENSG00000011454	RABGAP1	GAPCENA|TBC1D11	RAB GTPase activating protein 1	protein-coding
49481	chr12	25210951	25211530	+	0	NA	intron (NM_004985, intron 4 of 4)	intron (NM_004985, intron 4 of 4)	16003	NM_001001660	144363		NM_001001660	ENSG00000205707	ETFRF1	LYRM5	electron transfer flavoprotein regulatory factor 1	protein-coding
94831	chr17	31394271	31394800	+	0	NA	intron (NM_032932, intron 1 of 14)	intron (NM_032932, intron 1 of 14)	2860	NM_032932	84440		NM_032932	ENSG00000131242	RAB11FIP4	FIP4-Rab11|RAB11-FIP4	RAB11 family interacting protein 4	protein-coding
184472	chr5	100790171	100790530	+	0	NA	Intergenic	Intergenic	26215	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
90510	chr17	1462901	1464280	+	0	NA	TTS (NM_001080950)	TTS (NM_001080950)	-7358	NM_016823	1398		NM_005206	ENSG00000167193	CRK	CRKII|p38	CRK proto-oncogene, adaptor protein	protein-coding
158266	chr22	50325451	50325750	+	0	NA	intron (NM_001001794, intron 1 of 19)	AluSg|SINE|Alu	1412	NM_001001794	414918		NM_001001794	ENSG00000205593	DENND6B	AFI1B|FAM116B	DENN domain containing 6B	protein-coding
113774	chr19	10539901	10540100	+	0	NA	Intergenic	AluJb|SINE|Alu	-3904	NR_104025	84971		NM_032885	ENSG00000130734	ATG4D	APG4-D|APG4D|AUTL4|HsAPG4D	autophagy related 4D cysteine peptidase	protein-coding
39350	chr11	59549671	59551380	+	0	NA	Intergenic	Intergenic	35612	NM_001004711	390199		NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding
119669	chr19	40842321	40842680	+	0	NA	Intergenic	L1MC|LINE|L1	7947	NM_000762	1548		NM_000762	ENSG00000255974	CYP2A6	CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB	cytochrome P450 family 2 subfamily A member 6	protein-coding
74986	chr15	63899151	63899580	+	0	NA	Intergenic	Intergenic	-28346	NR_029944	494334		NR_029944	ENSG00000199156	MIR422A	MIRN422A	microRNA 422a	ncRNA
188036	chr5	149667571	149667830	+	0	NA	Intergenic	Intergenic	-62610	NM_001172698	133522		NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
209200	chr7	75421921	75422180	+	0	NA	exon (NM_001099415, exon 13 of 15)	exon (NM_001099415, exon 13 of 15)	11728	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
104642	chr17	81452821	81453080	+	0	NA	intron (NM_001377448, intron 14 of 27)	intron (NM_001377448, intron 14 of 27)	-1762	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
19876	chr1	183588971	183589330	+	0	NA	intron (NM_001127651, intron 2 of 15)	intron (NM_001127651, intron 2 of 15)	1309	NM_000433	4688		NM_000433	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
150337	chr21	42118251	42118350	+	0	NA	intron (NM_173568, intron 13 of 21)	intron (NM_173568, intron 13 of 21)	-9766	NR_027243	150147		NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA
149487	chr21	32394471	32394630	+	0	NA	TTS (NR_026845)	TTS (NR_026845)	1417	NR_026845	84996		NM_032910	ENSG00000256073	URB1-AS1	C21orf119|PRED84	URB1 antisense RNA 1 (head to head)	ncRNA
116684	chr19	18415521	18415900	+	0	NA	Intergenic	L2a|LINE|L2	-3688	NM_001009998	170463		NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding
8318	chr1	40098451	40098880	+	0	NA	Intergenic	AluJr|SINE|Alu	-1413	NM_001363695	5538		NM_000310	ENSG00000131238	PPT1	CLN1|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding
52386	chr12	55722951	55723250	+	0	NA	intron (NM_001199771, intron 3 of 4)	AluJr|SINE|Alu	2707	NM_001199771	5959		NM_002905	ENSG00000135437	RDH5	9cRDH|HSD17B9|RDH1|SDR9C5	retinol dehydrogenase 5	protein-coding
99555	chr17	50392521	50392780	+	0	NA	intron (NM_018509, intron 3 of 6)	intron (NM_018509, intron 3 of 6)	4873	NM_018509	55379		NM_018509	ENSG00000108829	LRRC59	PRO1855|p34	leucine rich repeat containing 59	protein-coding
211318	chr7	103812021	103812280	+	0	NA	intron (NM_173054, intron 3 of 63)	intron (NM_173054, intron 3 of 63)	177366	NM_173054	5649		NM_005045	ENSG00000189056	RELN	ETL7|LIS2|PRO1598|RL	reelin	protein-coding
145399	chr20	41555201	41555730	+	0	NA	intron (NM_032221, intron 1 of 36)	SVA_D|Retroposon|SVA	62912	NM_032221	84181		NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding
224377	chr9	7977601	7978050	+	0	NA	Intergenic	Intergenic	-178047	NM_001318059	90871		NM_033428	ENSG00000137038	DMAC1	C9orf123|TMEM261	distal membrane arm assembly component 1	protein-coding
57370	chr12	121792401	121793300	+	0	NA	intron (NM_019034, intron 2 of 4)	intron (NM_019034, intron 2 of 4)	838	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
60077	chr13	33786821	33787500	+	0	NA	Intergenic	Intergenic	-30909	NM_181558	5983		NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding
30315	chr10	75401021	75401680	+	0	NA	promoter-TSS (NR_024421)	promoter-TSS (NR_024421)	-178	NR_024421	100131213		NR_024421	ENSG00000237149	ZNF503-AS2	C10orf41|NCRNA00245	ZNF503 antisense RNA 2	ncRNA
51811	chr12	53421071	53422030	+	0	NA	Intergenic	Intergenic	-2305	NM_001164691	269		NM_020547	ENSG00000135409	AMHR2	AMHR|MISR2|MISRII|MRII	anti-Mullerian hormone receptor type 2	protein-coding
55819	chr12	108840151	108840450	+	0	NA	intron (NM_001161330, intron 2 of 13)	AluSz|SINE|Alu	-3294	NR_030350	693204		NR_030350	ENSG00000207622	MIR619	MIRN619|hsa-mir-619	microRNA 619	ncRNA
70273	chr14	101728951	101729730	+	0	NA	Intergenic	AluJb|SINE|Alu	-1097	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
16858	chr1	155742971	155743730	+	0	NA	Intergenic	Intergenic	-2418	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
193430	chr6	30473771	30473930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-15659	NM_005516	3133		NM_005516	ENSG00000204592	HLA-E	HLA-6.2|QA1	major histocompatibility complex, class I, E	protein-coding
67633	chr14	73043271	73043430	+	0	NA	Intergenic	AluSz|SINE|Alu	-15184	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
38748	chr11	47004671	47004830	+	0	NA	intron (NR_103472, intron 2 of 7)	intron (NR_103472, intron 2 of 7)	67989	NR_103472	79096		NM_024113	ENSG00000149179	CSTPP1	C11orf49	centriolar satellite-associated tubulin polyglutamylase complex regulator 1	protein-coding
82290	chr16	15592251	15592800	+	0	NA	Intergenic	Intergenic	18570	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
147560	chr20	60137601	60137950	+	0	NA	promoter-TSS (NR_046099)	promoter-TSS (NR_046099)	-717	NR_046099	284757		NM_001004305	ENSG00000228340	MIR646HG	-	MIR646 host gene	ncRNA
157561	chr22	45867621	45868080	+	0	NA	Intergenic	CpG	107326	NR_039919	100616253		NR_039919	ENSG00000264160	MIR4762	-	microRNA 4762	ncRNA
43301	chr11	76204971	76205130	+	0	NA	intron (NM_004626, intron 1 of 4)	intron (NM_004626, intron 1 of 4)	1452	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
1137	chr1	2150151	2150480	+	0	NA	intron (NR_146911, intron 5 of 15)	intron (NR_146911, intron 5 of 15)	33560	NR_146290	100506504		NR_146290	ENSG00000182873	PRKCZ-AS1	-	PRKCZ antisense RNA 1	ncRNA
218388	chr8	45363051	45363150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1254543	NR_146077	389652		NR_146077	ENSG00000290398	ASNSP1	ASNSL1	ASNS pseudogene 1	pseudo
126981	chr2	36403701	36404000	+	0	NA	intron (NM_016441, intron 2 of 16)	L2|LINE|L2	48072	NM_016441	51232		NM_016441	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1	protein-coding
87093	chr16	68519271	68519730	+	0	NA	Intergenic	L2b|LINE|L2	-19713	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
220879	chr8	103461471	103461830	+	0	NA	Intergenic	Intergenic	37581	NR_145697	105375690		NR_145697		LOC105375690	-	uncharacterized LOC105375690	ncRNA
113673	chr19	10392671	10392830	+	0	NA	intron (NM_007065, intron 7 of 7)	intron (NM_007065, intron 7 of 7)	10788	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
215303	chr7	157307651	157308550	+	0	NA	Intergenic	MER41B|LTR|ERV1	-28904	NM_001363676	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
43972	chr11	93785821	93786780	+	0	NA	intron (NM_004268, intron 1 of 11)	L1ME3G|LINE|L1	2018	NM_004268	9440		NM_004268	ENSG00000042429	MED17	CRSP6|CRSP77|DRIP80|SRB4|TRAP80	mediator complex subunit 17	protein-coding
16151	chr1	153689771	153690330	+	0	NA	promoter-TSS (NR_107050)	promoter-TSS (NR_107050)	-257	NR_107050	102466879		NR_107050	ENSG00000274940	MIR8083	hsa-mir-8083	microRNA 8083	ncRNA
133621	chr2	126663471	126663780	+	0	NA	intron (NM_016815, intron 1 of 2)	intron (NM_016815, intron 1 of 2)	7467	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
70086	chr14	100165851	100166500	+	0	NA	Intergenic	Intergenic	-6530	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
51118	chr12	50086421	50086680	+	0	NA	intron (NM_139071, intron 2 of 11)	intron (NM_139071, intron 2 of 11)	1208	NM_003076	6602		NM_003076	ENSG00000066117	SMARCD1	BAF60A|CRACD1|CSS11|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding
162140	chr3	46955551	46956530	+	0	NA	intron (NM_144716, intron 2 of 7)	MIRb|SINE|MIR	20461	NR_102269	151903		NM_144716	ENSG00000160799	CCDC12	-	coiled-coil domain containing 12	protein-coding
154839	chr22	37076301	37076780	+	0	NA	intron (NM_153609, intron 10 of 17)	intron (NM_153609, intron 10 of 17)	24804	NM_001282685	79734		NM_024681	ENSG00000100379	KCTD17	-	potassium channel tetramerization domain containing 17	protein-coding
184565	chr5	102778521	102779030	+	0	NA	intron (NM_001364588, intron 1 of 24)	intron (NM_001364588, intron 1 of 24)	23470	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
82265	chr16	15145051	15145850	+	0	NA	Intergenic	Intergenic	-8491	NR_123721	105369154		NR_123721	ENSG00000270580	PKD1P6-NPIPP1	-	PKD1P6-NPIPP1 readthrough	pseudo
71788	chr15	21711151	21711250	+	0	NA	Intergenic	Intergenic	7107	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
173975	chr4	26126271	26126580	+	0	NA	Intergenic	Intergenic	-37033	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
147689	chr20	62314171	62315150	+	0	NA	exon (NM_005560, exon 61 of 80)	exon (NM_005560, exon 61 of 80)	11663	NM_007002	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
23318	chr1	228090751	228091430	+	0	NA	intron (NM_001024227, intron 1 of 4)	intron (NM_001024227, intron 1 of 4)	-6173	NR_037415	100500810		NR_037415	ENSG00000284163	MIR3620	mir-3620	microRNA 3620	ncRNA
183055	chr5	73449601	73449900	+	0	NA	promoter-TSS (NM_004472)	promoter-TSS (NM_004472)	-973	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
164177	chr3	56795551	56797100	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	5624	NM_001377415	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
201508	chr6	149058251	149058550	+	0	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-25739	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
187761	chr5	144191751	144192630	+	0	NA	intron (NM_020768, intron 2 of 3)	intron (NM_020768, intron 2 of 3)	-13201	NM_001370487	57528		NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding
172246	chr4	1353201	1353600	+	0	NA	exon (NM_020894, exon 5 of 14)	exon (NM_020894, exon 5 of 14)	5844	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
135584	chr2	165952321	165953000	+	0	NA	intron (NM_024753, intron 1 of 28)	intron (NM_024753, intron 1 of 28)	1116	NM_024753	79809		NM_024753	ENSG00000123607	TTC21B	ATD4|CFAP60|FAP60|FLA17|IFT139|IFT139B|JBTS11|NPHP12|Nbla10696|SRTD4|THM1	tetratricopeptide repeat domain 21B	protein-coding
189808	chr5	176934351	176934850	+	0	NA	intron (NR_146149, intron 10 of 15)	MLT1J|LTR|ERVL-MaLR	-35254	NM_002115	3101		NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3	protein-coding
154765	chr22	36515771	36515930	+	0	NA	intron (NR_156418, intron 12 of 14)	intron (NR_156418, intron 12 of 14)	-8810	NM_001102371	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
145093	chr20	38722051	38722450	+	0	NA	Intergenic	Intergenic	-2236	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
102788	chr17	76365801	76366000	+	0	NA	Intergenic	AluJr|SINE|Alu	-11702	NM_001366236	5635		NM_002766	ENSG00000161542	PRPSAP1	PAP39	phosphoribosyl pyrophosphate synthetase associated protein 1	protein-coding
144495	chr20	35660051	35660500	+	0	NA	intron (NM_001198838, intron 1 of 2)	AluSz|SINE|Alu	4625	NR_037188	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
224520	chr9	19125521	19126050	+	0	NA	intron (NR_038064, intron 2 of 6)	AluSg4|SINE|Alu	1707	NM_001122	123		NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding
18990	chr1	169363151	169363900	+	0	NA	intron (NR_104229, intron 1 of 12)	MER112|DNA|hAT-Charlie	4272	NM_013330	29922		NM_013330	ENSG00000143156	NME7	CFAP67|MN23H7|NDK 7|NDK7|nm23-H7	NME/NM23 family member 7	protein-coding
75616	chr15	67130471	67131000	+	0	NA	intron (NM_001145102, intron 1 of 8)	intron (NM_001145102, intron 1 of 8)	5019	NM_001145102	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
10242	chr1	63522551	63524050	+	0	NA	promoter-TSS (NM_014288)	promoter-TSS (NM_014288)	-27	NM_001347145	23421		NM_014288	ENSG00000142856	ITGB3BP	CENP-R|CENPR|HSU37139|NRIF3|TAP20	integrin subunit beta 3 binding protein	protein-coding
54551	chr12	92148651	92149030	+	0	NA	intron (NR_135036, intron 2 of 2)	intron (NR_135036, intron 2 of 2)	2755	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
107976	chr18	58603521	58603780	+	0	NA	intron (NM_052947, intron 3 of 12)	intron (NM_052947, intron 3 of 12)	3030	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
222340	chr8	133533401	133533800	+	0	NA	intron (NM_173344, intron 2 of 9)	intron (NM_173344, intron 2 of 9)	38287	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
73010	chr15	40745351	40745450	+	0	NA	intron (NM_018145, intron 4 of 12)	intron (NM_018145, intron 4 of 12)	9854	NM_018145	55177		NM_018145	ENSG00000137824	RMDN3	FAM82A2|FAM82C|RMD-3|RMD3|ptpip51	regulator of microtubule dynamics 3	protein-coding
65291	chr14	50047201	50047800	+	0	NA	non-coding (NR_131171, exon 4 of 9)	non-coding (NR_131171, exon 4 of 9)	-39980	NR_126498	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
222875	chr8	142760771	142761130	+	0	NA	Intergenic	L1MB8|LINE|L1	-8418	NM_205545	137797		NM_205545	ENSG00000197353	LYPD2	LYPDC2|UNQ430	LY6/PLAUR domain containing 2	protein-coding
61299	chr13	50235251	50236030	+	0	NA	intron (NR_109974, intron 2 of 6)	MIRc|SINE|MIR	63622	NR_002183	145165		NM_153290		ST13P4	FAM10A4|FAM10A4P	ST13, Hsp70 interacting protein pseudogene 4	pseudo
205513	chr7	18291071	18291380	+	0	NA	intron (NM_001321896, intron 1 of 12)	intron (NM_001321896, intron 1 of 12)	1133	NM_001321896	9734		NM_014707	ENSG00000048052	HDAC9	ARCND4|HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding
215009	chr7	152384021	152384850	+	0	NA	intron (NM_170606, intron 1 of 58)	L2c|LINE|L2	51568	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
196862	chr6	49409921	49410260	+	0	NA	Intergenic	Intergenic	53163	NM_000255	4594		NM_000255	ENSG00000146085	MMUT	MCM|MUT	methylmalonyl-CoA mutase	protein-coding
18965	chr1	168579971	168580130	+	0	NA	intron (NM_002995, intron 1 of 2)	intron (NM_002995, intron 1 of 2)	3445	NM_002995	6375		NM_002995	ENSG00000143184	XCL1	ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1	X-C motif chemokine ligand 1	protein-coding
187490	chr5	142220551	142221050	+	0	NA	Intergenic	Intergenic	97522	NR_131221	100642175		NR_131221		SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
11793	chr1	92537901	92538730	+	0	NA	intron (NM_001377213, intron 20 of 20)	intron (NM_001377213, intron 20 of 20)	-51390	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
23582	chr1	229556421	229556680	+	0	NA	intron (NM_012089, intron 1 of 12)	intron (NM_012089, intron 1 of 12)	2157	NM_012089	23456		NM_012089	ENSG00000135776	ABCB10	EST20237|M-ABC2|MTABC2	ATP binding cassette subfamily B member 10	protein-coding
117838	chr19	31341421	31341680	+	0	NA	intron (NR_138034, intron 1 of 1)	intron (NR_138034, intron 1 of 1)	7886	NR_138034	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
235928	chrX	53192451	53192900	+	0	NA	3' UTR (NM_001353978, exon 26 of 26)	3' UTR (NM_001353978, exon 26 of 26)	2813	NR_106955	102465539		NR_106955	ENSG00000276575	MIR6895	hsa-mir-6895	microRNA 6895	ncRNA
115652	chr19	16122301	16122500	+	0	NA	intron (NM_005370, intron 3 of 7)	intron (NM_005370, intron 3 of 7)	10511	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
83103	chr16	22462651	22463080	+	0	NA	intron (NR_027154, intron 6 of 28)	AluSc|SINE|Alu	-25150	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
232485	chr9	136250101	136250530	+	0	NA	3' UTR (NM_001378188, exon 26 of 26)	3' UTR (NM_001378188, exon 26 of 26)	-4503	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
168849	chr3	152274371	152274530	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-4824	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
184104	chr5	93886951	93887290	+	0	NA	intron (NR_028080, intron 4 of 8)	intron (NR_028080, intron 4 of 8)	-145520	NM_153216	134187		NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
64624	chr14	31023801	31024250	+	0	NA	intron (NM_014574, intron 1 of 15)	intron (NM_014574, intron 1 of 15)	-1081	NM_001254729	11154		NM_007077	ENSG00000100478	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor related protein complex 4 subunit sigma 1	protein-coding
5086	chr1	24709921	24710380	+	0	NA	Intergenic	AluJo|SINE|Alu	-35297	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
178412	chr4	147728321	147728630	+	0	NA	Intergenic	L2a|LINE|L2	-3613	NM_024605	79658		NM_024605	ENSG00000071205	ARHGAP10	GRAF2|PS-GAP|PSGAP	Rho GTPase activating protein 10	protein-coding
111288	chr19	3569701	3569900	+	0	NA	Intergenic	AluY|SINE|Alu	-3144	NM_006339	10362		NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
47730	chr12	6469001	6469300	+	0	NA	intron (NM_016830, intron 1 of 4)	intron (NM_016830, intron 1 of 4)	1527	NR_123717	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
225778	chr9	37431871	37432030	+	0	NA	intron (NM_012203, intron 7 of 8)	intron (NM_012203, intron 7 of 8)	9254	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
103125	chr17	77384321	77385100	+	0	NA	intron (NM_001113494, intron 1 of 10)	MER5A|DNA|hAT-Charlie	8627	NM_001113494	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
115902	chr19	16593151	16593450	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	-20885	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
105885	chr18	3264471	3265130	+	0	NA	intron (NM_001144945, intron 1 of 3)	L1ME2|LINE|L1	2081	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
232618	chr9	136442771	136442930	+	0	NA	intron (NM_014866, intron 31 of 31)	intron (NM_014866, intron 31 of 31)	-3005	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
67354	chr14	69696601	69697050	+	0	NA	intron (NM_014734, intron 2 of 5)	MER41B|LTR|ERV1	-70317	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
93586	chr17	19118621	19119300	+	0	NA	Intergenic	Intergenic	-6324	NR_006882	780854		NR_006882	ENSG00000281000	SNORD3D	RNU3-4|U3-4	small nucleolar RNA, C/D box 3D	snoRNA
97784	chr17	44696851	44697150	+	0	NA	Intergenic	AluY|SINE|Alu	-7203	NM_001099225	124808		NM_144609	ENSG00000180329	CCDC43	-	coiled-coil domain containing 43	protein-coding
59835	chr13	30456171	30456530	+	0	NA	TTS (NM_002128)	TTS (NM_002128)	7977	NM_001313892	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
31959	chr10	100724951	100725050	+	0	NA	Intergenic	MIRb|SINE|MIR	-10396	NM_001374303	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
24877	chr10	929321	929580	+	0	NA	intron (NM_001351277, intron 1 of 17)	AluSz|SINE|Alu	2255	NM_001351277	23185		NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	La ribonucleoprotein 4B	protein-coding
35951	chr11	2534621	2534880	+	0	NA	intron (NM_181798, intron 2 of 15)	intron (NM_181798, intron 2 of 15)	73296	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
167220	chr3	128456001	128456700	+	0	NA	Intergenic	Intergenic	-7244	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
163401	chr3	50526971	50527350	+	0	NA	Intergenic	Intergenic	-22916	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
58608	chr12	132483501	132484000	+	0	NA	Intergenic	Intergenic	-6401	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
171482	chr3	196511921	196512180	+	0	NA	intron (NM_001077657, intron 1 of 2)	intron (NM_001077657, intron 1 of 2)	3296	NM_001320473	255798		NM_001077657	ENSG00000214097	SMCO1	C3orf43	single-pass membrane protein with coiled-coil domains 1	protein-coding
118218	chr19	35168401	35168950	+	0	NA	intron (NM_001320912, intron 8 of 8)	L2a|LINE|L2	13940	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
158298	chr22	50394601	50395000	+	0	NA	intron (NM_001351648, intron 3 of 22)	AluY|SINE|Alu	-12642	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
65562	chr14	51939751	51940480	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	-21544	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
84653	chr16	30735651	30735950	+	0	NA	intron (NM_006662, intron 31 of 33)	AluSg|SINE|Alu	-4842	NM_001256829	100862671		NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
188584	chr5	157157321	157157780	+	0	NA	Intergenic	L1MDa|LINE|L1	8714	NM_130899	153745		NM_130899	ENSG00000170613	GARIN3	FAM71B|GARI-L3	golgi associated RAB2 interactor family member 3	protein-coding
178741	chr4	153114621	153115290	+	0	NA	Intergenic	Intergenic	-37208	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
139883	chr2	230666701	230666900	+	0	NA	Intergenic	Intergenic	33729	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
217208	chr8	26382721	26384380	+	0	NA	promoter-TSS (NR_144550)	promoter-TSS (NR_144550)	496	NM_004331	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
220846	chr8	103073671	103074230	+	0	NA	TTS (NM_001695)	TTS (NM_001695)	-47082	NR_145429	379034		NR_145429		LINC01181	-	long intergenic non-protein coding RNA 1181	ncRNA
115535	chr19	15456771	15457750	+	0	NA	intron (NM_022904, intron 9 of 17)	CpG	7284	NM_022904	64926		NM_022904	ENSG00000105122	RASAL3	-	RAS protein activator like 3	protein-coding
86085	chr16	57632771	57633330	+	0	NA	intron (NM_001145772, intron 1 of 14)	intron (NM_001145772, intron 1 of 14)	4420	NM_001370454	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
55443	chr12	104569501	104570730	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-21518	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
130095	chr2	74513001	74513400	+	0	NA	Intergenic	CpG	-1250	NM_016170	3196		NM_001534	ENSG00000115297	TLX2	HOX11L1|NCX	T cell leukemia homeobox 2	protein-coding
87323	chr16	70254971	70255500	+	0	NA	intron (NM_001605, intron 16 of 20)	AluSg|SINE|Alu	-3295	NM_058219	118460		NM_058219	ENSG00000223496	EXOSC6	EAP4|MTR3|Mtr3p|hMtr3p|p11	exosome component 6	protein-coding
181514	chr5	43033371	43033630	+	0	NA	intron (NR_104651, intron 2 of 2)	intron (NR_104651, intron 2 of 2)	6819	NM_001014279	389289		NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding
123469	chr19	54161401	54161600	+	0	NA	intron (NM_144686, intron 11 of 14).4	AluSz6|SINE|Alu	-1779	NM_024316	79165		NM_024316	ENSG00000105617	LENG1	-	leukocyte receptor cluster member 1	protein-coding
30233	chr10	75007851	75008150	+	0	NA	intron (NM_012330, intron 13 of 17).2	intron (NM_012330, intron 13 of 17).2	-13733	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
95701	chr17	38484471	38485190	+	0	NA	intron (NM_001199417, intron 16 of 23).2	intron (NM_001199417, intron 16 of 23).2	56366	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
209814	chr7	88042201	88042400	+	0	NA	intron (NM_021721, intron 3 of 27)	intron (NM_021721, intron 3 of 27)	108049	NM_021723	53616		NM_004194	ENSG00000008277	ADAM22	ADAM 22|DEE61|EIEE61|MDC2	ADAM metallopeptidase domain 22	protein-coding
170275	chr3	184304021	184304480	+	0	NA	intron (NM_001278709, intron 9 of 18)	intron (NM_001278709, intron 9 of 18)	3669	NM_001278709	5708		NM_002808	ENSG00000175166	PSMD2	P97|RPN1|S2|TRAP2	proteasome 26S subunit ubiquitin receptor, non-ATPase 2	protein-coding
91709	chr17	6472951	6473450	+	0	NA	intron (NM_001165966, intron 9 of 18)	L2c|LINE|L2	28745	NM_001195228	54478		NM_019013	ENSG00000129195	PIMREG	CATS|FAM64A|RCS1	PICALM interacting mitotic regulator	protein-coding
73641	chr15	44677331	44678600	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1077	NM_001145112	197135		NM_001145112	ENSG00000229474	PATL2	OOMD4|OZEMA4|Pat1a|hPat1a	PAT1 homolog 2	protein-coding
28882	chr10	62761271	62761430	+	0	NA	Intergenic	Intergenic	-43370	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
87475	chr16	71732001	71732200	+	0	NA	3' UTR (NM_001030007, exon 24 of 24)	3' UTR (NM_001030007, exon 24 of 24)	-7399	NM_015020	23035		NM_015020	ENSG00000040199	PHLPP2	PHLPPL|PPM3B	PH domain and leucine rich repeat protein phosphatase 2	protein-coding
132393	chr2	105784101	105784400	+	0	NA	intron (NM_001004722, intron 1 of 3)	AluJb|SINE|Alu	39187	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
96032	chr17	39413571	39413930	+	0	NA	intron (NM_004774, intron 16 of 16)	AluJb|SINE|Alu	-11194	NM_001370209	84961		NM_032875	ENSG00000108306	FBXL20	Fbl2|Fbl20	F-box and leucine rich repeat protein 20	protein-coding
110568	chr19	2144521	2144780	+	0	NA	intron (NM_001374799, intron 1 of 31)	AluSz|SINE|Alu	6916	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
22430	chr1	220218651	220218950	+	0	NA	intron (NM_012414, intron 2 of 34)	intron (NM_012414, intron 2 of 34)	-18124	NR_002994	677818		NR_002994	ENSG00000222370	SNORA36B	ACA36b	small nucleolar RNA, H/ACA box 36B	snoRNA
107588	chr18	48855901	48856180	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	86767	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
137222	chr2	191570321	191570650	+	0	NA	Intergenic	L1ME1|LINE|L1	-107587	NR_045622	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
182561	chr5	65926301	65927200	+	0	NA	5' UTR (NM_001253698, exon 1 of 24)	5' UTR (NM_001253698, exon 1 of 24)	175	NM_001253697	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
239515	chrY	56832371	56832700	+	0	NA	Intergenic	Intergenic	-121720	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
50438	chr12	47703121	47703580	+	0	NA	intron (NM_001146075, intron 1 of 15)	MER20|DNA|hAT-Charlie	2680	NM_024604	79657		NM_024604	ENSG00000005175	RPAP3	Tah1|hSpagh	RNA polymerase II associated protein 3	protein-coding
212434	chr7	128380871	128381450	+	0	NA	Intergenic	Intergenic	-5522	NR_148338	107986845		NR_148338		LOC107986845	-	uncharacterized LOC107986845	ncRNA
78931	chr15	101249601	101249800	+	0	NA	intron (NM_014918, intron 1 of 2)	AluSx|SINE|Alu	2348	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
143156	chr20	24029901	24030300	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-41321	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
27543	chr10	32332151	32333150	+	0	NA	intron (NR_168508, intron 1 of 12)	MLT1F|LTR|ERVL-MaLR	14508	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
204118	chr7	2261621	2262080	+	0	NA	intron (NM_013321, intron 7 of 10)	intron (NM_013321, intron 7 of 10)	-4273	NR_106895	102465503		NR_106895	ENSG00000284047	MIR6836	hsa-mir-6836	microRNA 6836	ncRNA
128645	chr2	61424221	61424480	+	0	NA	intron (NM_014709, intron 1 of 79)	Tigger3a|DNA|TcMar-Tigger	-6973	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
35248	chr11	852671	853130	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	8454	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
121448	chr19	47039121	47039580	+	0	NA	intron (NM_002517, intron 7 of 11)	intron (NM_002517, intron 7 of 11)	4033	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
180716	chr5	25569151	25569400	+	0	NA	Intergenic	LTR12F|LTR|ERV1	378322	NR_136209	105374693		NR_136209		LINC02211	-	long intergenic non-protein coding RNA 2211	ncRNA
179057	chr4	165378851	165379650	+	0	NA	exon (NM_001873, exon 1 of 9)	exon (NM_001873, exon 1 of 9)	242	NM_001873	1363		NM_001873	ENSG00000109472	CPE	BDVS|CPH|IDDHH	carboxypeptidase E	protein-coding
106131	chr18	9330871	9331030	+	0	NA	Intergenic	Intergenic	-3823	NM_020648	57045		NM_020648	ENSG00000128791	TWSG1	TSG	twisted gastrulation BMP signaling modulator 1	protein-coding
26036	chr10	12356071	12356630	+	0	NA	intron (NM_153498, intron 1 of 10)	intron (NM_153498, intron 1 of 10)	6803	NM_153498	57118		NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding
98886	chr17	48568951	48569250	+	0	NA	intron (NM_001384750, intron 1 of 3)	intron (NM_001384750, intron 1 of 3)	5348	NM_002146	3213		NM_002146	ENSG00000120093	HOXB3	HOX2|HOX2G|Hox-2.7	homeobox B3	protein-coding
41682	chr11	66622951	66623580	+	0	NA	intron (NM_001198846, intron 1 of 1)	MIR1_Amn|SINE|MIR	6635	NM_006328	10432		NM_006328	ENSG00000239306	RBM14	COAA|PSP2|SIP|SYTIP1|TMEM137	RNA binding motif protein 14	protein-coding
129473	chr2	69582721	69583380	+	0	NA	intron (NM_001371577, intron 2 of 14)	MIR3|SINE|MIR	60688	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
207924	chr7	50679221	50679590	+	0	NA	intron (NM_001371009, intron 2 of 15)	intron (NM_001371009, intron 2 of 15)	25896	NM_001001550	2887		NM_005311	ENSG00000106070	GRB10	GRB-IR|Grb-10|IRBP|MEG1|RSS	growth factor receptor bound protein 10	protein-coding
150516	chr21	42895951	42896300	+	0	NA	intron (NM_021075, intron 1 of 3)	AluSz|SINE|Alu	2816	NM_001001503	4731		NM_021075	ENSG00000160194	NDUFV3	CI-10k|CI-9KD	NADH:ubiquinone oxidoreductase subunit V3	protein-coding
224871	chr9	31334851	31335150	+	0	NA	Intergenic	MER52A|LTR|ERV1	46490	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
110596	chr19	2173901	2174100	+	0	NA	intron (NM_032482, intron 1 of 27)	FRAM|SINE|Alu	10067	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
47121	chr12	684001	684770	+	0	NA	Intergenic	Intergenic	-20940	NM_016533	4815		NM_016533	ENSG00000171840	NINJ2	-	ninjurin 2	protein-coding
112410	chr19	6199221	6200530	+	0	NA	Intergenic	Intergenic	64208	NM_001289179	81616		NM_030924	ENSG00000130377	ACSBG2	BGR|BRGL|PRTD-NY3|PRTDNY3	acyl-CoA synthetase bubblegum family member 2	protein-coding
152490	chr22	20915371	20915930	+	0	NA	Intergenic	MIR|SINE|MIR	-1757	NR_156180	1399		NM_005207	ENSG00000099942	CRKL	-	CRK like proto-oncogene, adaptor protein	protein-coding
142760	chr20	10511321	10511980	+	0	NA	intron (NM_001009608, intron 2 of 7)	MIR|SINE|MIR	76345	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
102294	chr17	75338551	75339630	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	-49641	NM_001126122	60386		NM_021734	ENSG00000125454	SLC25A19	DNC|MCPHA|MTPPT|MUP1|THMD3|THMD4|TPC	solute carrier family 25 member 19	protein-coding
2771	chr1	10753301	10753550	+	0	NA	intron (NM_017766, intron 2 of 15)	intron (NM_017766, intron 2 of 15)	43221	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
171995	chr4	952401	953180	+	0	NA	intron (NM_032326, intron 7 of 10)	(TG)n|Simple_repeat|Simple_repeat	20330	NM_032326	84286		NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
189977	chr5	177448671	177448830	+	0	NA	promoter-TSS (NR_038915)	promoter-TSS (NR_038915)	425	NM_001174102	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
207042	chr7	39519671	39520180	+	0	NA	Intergenic	Intergenic	-46479	NM_020192	57002		NM_020192	ENSG00000241127	YAE1	C7orf36|CIAB2|GK003|YAE1D1	YAE1 maturation factor of ABCE1	protein-coding
70753	chr14	103401051	103402150	+	0	NA	intron (NM_002376, intron 1 of 15)	MLT1I|LTR|ERVL-MaLR	16185	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
34797	chr11	250621	251380	+	0	NA	intron (NM_002817, intron 10 of 12)	intron (NM_002817, intron 10 of 12)	14024	NM_002817	5719		NM_002817	ENSG00000185627	PSMD13	HSPC027|Rpn9|S11|p40.5	proteasome 26S subunit, non-ATPase 13	protein-coding
16410	chr1	154466151	154466650	+	0	NA	3' UTR (NM_001382774, exon 9 of 9)	3' UTR (NM_001382774, exon 9 of 9)	-35819	NM_182499	126668		NM_182499	ENSG00000163239	TDRD10	-	tudor domain containing 10	protein-coding
150831	chr21	44021571	44022680	+	0	NA	intron (NM_003274, intron 1 of 22)	AluSq|SINE|Alu	9816	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
151613	chr22	12166271	12166830	+	0	NA	Intergenic	Intergenic	269144	NR_110761	102723769		NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
15585	chr1	150576751	150577300	+	0	NA	3' UTR (NM_182763, exon 2 of 2)	3' UTR (NM_182763, exon 2 of 2)	-2473	NR_104133	574406		NM_001025493	ENSG00000143384	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA
111693	chr19	4274251	4274550	+	0	NA	Intergenic	AluSq4|SINE|Alu	-4669	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
155958	chr22	39745821	39746100	+	0	NA	intron (NM_152512, intron 6 of 6)	HAL1|LINE|L1	147800	NM_152512	150350		NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
68791	chr14	91226121	91226720	+	0	NA	TTS (NM_001102368)	TTS (NM_001102368)	18284	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
40185	chr11	62905621	62906750	+	0	NA	Intergenic	Intergenic	15178	NM_000738	1128		NM_000738	ENSG00000168539	CHRM1	HM1|M1|M1R	cholinergic receptor muscarinic 1	protein-coding
184	chr1	674771	675330	+	0	NA	Intergenic	Intergenic	11604	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
140830	chr2	236567701	236568700	+	0	NA	Intergenic	CpG	-1625	NM_020311	57007		NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding
47828	chr12	6595521	6596400	+	0	NA	intron (NM_001273, intron 13 of 39)	AluSc5|SINE|Alu	10491	NM_001297553	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
137197	chr2	191152171	191152480	+	0	NA	promoter-TSS (NM_001243835)	promoter-TSS (NM_001243835)	-729	NM_001243835	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
12016	chr1	96719521	96719780	+	0	NA	Intergenic	Intergenic	-1955	NM_001300988	58155		NM_021190	ENSG00000117569	PTBP2	PTBLP|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
56844	chr12	120247101	120247650	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	2788	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
207199	chr7	43635371	43635850	+	0	NA	intron (NR_163914, intron 7 of 8)	MLT1I|LTR|ERVL-MaLR	52502	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
168876	chr3	152301501	152303150	+	0	NA	intron (NR_164857, intron 3 of 10)	intron (NR_164857, intron 3 of 10)	3311	NR_164865	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
166550	chr3	115217571	115217880	+	0	NA	Intergenic	Intergenic	-70437	NM_001348803	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
84334	chr16	30185201	30186500	+	0	NA	intron (NM_007074, intron 2 of 10)	intron (NM_007074, intron 2 of 10)	2248	NM_007074	11151		NM_007074	ENSG00000102879	CORO1A	CLABP|CLIPINA|HCORO1|IMD8|TACO|p57	coronin 1A	protein-coding
232992	chr9	136991401	136993090	+	0	NA	promoter-TSS (NM_001329678)	promoter-TSS (NM_001329678)	-177	NR_138077	286257		NM_183241	ENSG00000148362	PAXX	C9orf142|XLS	PAXX non-homologous end joining factor	protein-coding
158683	chr3	5190251	5190350	+	0	NA	intron (NM_014674, intron 1 of 11)	intron (NM_014674, intron 1 of 11)	2593	NM_014674	9695		NM_014674	ENSG00000134109	EDEM1	EDEM	ER degradation enhancing alpha-mannosidase like protein 1	protein-coding
135036	chr2	156323601	156324280	+	0	NA	TTS (NM_006186)	TTS (NM_006186)	8781	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
169753	chr3	172531571	172531730	+	0	NA	Intergenic	AluSc8|SINE|Alu	-8220	NM_003810	8743		NM_003810	ENSG00000121858	TNFSF10	APO2L|Apo-2L|CD253|TANCR|TL2|TNLG6A|TRAIL	TNF superfamily member 10	protein-coding
152761	chr22	21759451	21759950	+	0	NA	TTS (NM_002745)	TTS (NM_002745)	-23906	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
142491	chr20	4688201	4688780	+	0	NA	intron (NM_001080123, intron 1 of 1)	L1ME4c|LINE|L1	2034	NM_183079	5621		NM_000311	ENSG00000171867	PRNP	ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30	prion protein (Kanno blood group)	protein-coding
83078	chr16	22371571	22372430	+	0	NA	intron (NM_001802, intron 1 of 4)	AluSq2|SINE|Alu	2619	NM_001802	1039		NM_001802	ENSG00000140743	CDR2	CDR62|Yo	cerebellar degeneration related protein 2	protein-coding
155608	chr22	38840471	38840630	+	0	NA	intron (NM_014293, intron 1 of 4)	intron (NM_014293, intron 1 of 4)	3478	NM_014293	23467		NM_014293	ENSG00000221890	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
174020	chr4	26585601	26585830	+	0	NA	intron (NM_001292054, intron 1 of 17)	AluSx1|SINE|Alu	1631	NM_018317	55296		NM_018317	ENSG00000109680	TBC1D19	-	TBC1 domain family member 19	protein-coding
132142	chr2	101725071	101725230	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	26885	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
111794	chr19	4449001	4449700	+	0	NA	intron (NM_025241, intron 4 of 10)	intron (NM_025241, intron 4 of 10)	3372	NR_039901	100616371		NR_039901	ENSG00000266437	MIR4746	mir-4746	microRNA 4746	ncRNA
151714	chr22	17637901	17639750	+	0	NA	promoter-TSS (NM_015367)	promoter-TSS (NM_015367)	68	NM_015367	23786		NM_015367	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2 like 13	protein-coding
169904	chr3	177644971	177645480	+	0	NA	intron (NR_047568, intron 3 of 3)	intron (NR_047568, intron 3 of 3)	-171640	NR_110826	102724550		NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
141052	chr2	238250251	238250550	+	0	NA	intron (NM_022817, intron 21 of 22)	intron (NM_022817, intron 21 of 22)	-10362	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
68982	chr14	91463901	91464100	+	0	NA	intron (NR_158976, intron 13 of 16)	L1PA15|LINE|L1	-46180	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
107949	chr18	58180571	58180930	+	0	NA	intron (NM_001243960, intron 2 of 28)	intron (NM_001243960, intron 2 of 28)	-14655	NM_001144970	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
142517	chr20	4844621	4844950	+	0	NA	Intergenic	(AAGG)n|Simple_repeat|Simple_repeat	-21177	NM_014737	9770		NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
237947	chrX	132622351	132622450	+	0	NA	Intergenic	Intergenic	-45242	NR_046691	100874102		NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
148135	chr20	63475201	63476280	+	0	NA	Intergenic	Intergenic	-3085	NM_172108	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
136635	chr2	179219001	179219300	+	0	NA	intron (NM_178123, intron 1 of 17)	intron (NM_178123, intron 1 of 17)	45682	NM_178123	91404		NM_178123	ENSG00000187231	SESTD1	SOLO	SEC14 and spectrin domain containing 1	protein-coding
202097	chr6	154684021	154684600	+	0	NA	Intergenic	Intergenic	-49068	NM_001286189	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
144982	chr20	37336501	37337230	+	0	NA	Intergenic	Intergenic	-7820	NM_005417	6714		NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding
180133	chr5	1326871	1327030	+	0	NA	intron (NM_030782, intron 9 of 16)	intron (NM_030782, intron 9 of 16)	-17573	NR_039662	100616235		NR_039662	ENSG00000263670	MIR4457	mir-4457	microRNA 4457	ncRNA
132099	chr2	101333121	101333580	+	0	NA	Intergenic	Intergenic	23900	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
158784	chr3	9500251	9501180	+	0	NA	3' UTR (NM_198560, exon 4 of 4)	3' UTR (NM_198560, exon 4 of 4)	53107	NM_198560	375323		NM_198560	ENSG00000156959	LHFPL4	GARLH4	LHFPL tetraspan subfamily member 4	protein-coding
169654	chr3	171462221	171462500	+	0	NA	Intergenic	Intergenic	-1952	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
213726	chr7	140358101	140359830	+	0	NA	intron (NM_032295, intron 5 of 11)	intron (NM_032295, intron 5 of 11)	39565	NM_001363375	84255		NM_032295	ENSG00000157800	SLC37A3	SPX3	solute carrier family 37 member 3	protein-coding
234481	chrX	18104671	18104830	+	0	NA	promoter-TSS (NR_133641)	promoter-TSS (NR_133641)	-106	NR_133641	105373144		NR_133641	ENSG00000225882	LINC01456	-	long intergenic non-protein coding RNA 1456	ncRNA
109830	chr19	1180351	1181050	+	0	NA	Intergenic	Intergenic	-6432	NM_014963	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
77855	chr15	88705101	88705880	+	0	NA	Intergenic	Intergenic	66474	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
9582	chr1	52002171	52002570	+	0	NA	Intergenic	Intergenic	-11670	NM_002867	5865		NM_002867	ENSG00000169213	RAB3B	-	RAB3B, member RAS oncogene family	protein-coding
172279	chr4	1546851	1547380	+	0	NA	Intergenic	Intergenic	136876	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
144213	chr20	34360921	34361180	+	0	NA	Intergenic	AluSx|SINE|Alu	-2223	NM_001257138	83737		NM_031483	ENSG00000078747	ITCH	ADMFD|AIF4|AIP4|NAPP1	itchy E3 ubiquitin protein ligase	protein-coding
219016	chr8	63222201	63222600	+	0	NA	Intergenic	Intergenic	53397	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
196612	chr6	44248951	44250100	+	0	NA	exon (NM_007355, exon 3 of 12)	exon (NM_007355, exon 3 of 12)	1582	NM_001371238	3326		NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding
15482	chr1	150369251	150370000	+	0	NA	intron (NM_015203, intron 1 of 10)	AluYc|SINE|Alu	5514	NM_001297673	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
31453	chr10	96043101	96044530	+	0	NA	intron (NM_001134376, intron 1 of 5)	CpG	232	NM_001134375	54619		NM_019084	ENSG00000107443	CCNJ	bA690P14.1	cyclin J	protein-coding
154928	chr22	37211851	37211950	+	0	NA	5' UTR (NM_001051, exon 1 of 2)	5' UTR (NM_001051, exon 1 of 2)	577	NM_001051	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
216103	chr8	11117251	11117350	+	0	NA	intron (NR_138153, intron 1 of 2)	intron (NR_138153, intron 1 of 2)	-50211	NR_134308	101929269		NR_134308	ENSG00000254839	LOC101929269	-	uncharacterized LOC101929269	ncRNA
146042	chr20	47351551	47352100	+	0	NA	promoter-TSS (NM_001363741)	promoter-TSS (NM_001363741)	-76	NM_001363741	23613		NM_012408	ENSG00000101040	ZMYND8	PRKCBP1|PRO2893|RACK7	zinc finger MYND-type containing 8	protein-coding
56914	chr12	120422221	120422480	+	0	NA	Intergenic	AluY|SINE|Alu	-15763	NM_004373	1337		NM_004373	ENSG00000111775	COX6A1	CMTRID|COX6A|COX6AL	cytochrome c oxidase subunit 6A1	protein-coding
163688	chr3	52250771	52251600	+	0	NA	TTS (NM_144641)	TTS (NM_144641)	5018	NM_001122870	132160		NM_144641	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein-coding
117194	chr19	19369051	19369350	+	0	NA	Intergenic	AluSx|SINE|Alu	-16643	NM_001384519	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
160993	chr3	37249721	37249980	+	0	NA	intron (NM_001172713, intron 1 of 22)	intron (NM_001172713, intron 1 of 22)	-5655	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
157114	chr22	42641651	42642150	+	0	NA	intron (NM_000398, intron 1 of 8)	AluSz|SINE|Alu	-1299	NM_001165877	267020		NM_198822	ENSG00000249222	ATP5MGL	ATP5K2|ATP5L2	ATP synthase membrane subunit g like	protein-coding
93292	chr17	18143351	18144530	+	0	NA	exon (NM_016239, exon 27 of 65)	exon (NM_016239, exon 27 of 65)	-26379	NR_164159	105371566		NR_164159		LOC105371566	-	uncharacterized LOC105371566	ncRNA
142203	chr20	3040121	3041030	+	0	NA	Intergenic	Intergenic	-3047	NM_178332	2797		NM_001501	ENSG00000125787	GNRH2	GnRH-II|LH-RHII	gonadotropin releasing hormone 2	protein-coding
198547	chr6	106563971	106564330	+	0	NA	intron (NM_001371242, intron 21 of 21)	MIRb|SINE|MIR	52295	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
33391	chr10	117653071	117653430	+	0	NA	Intergenic	Intergenic	-108182	NR_002791	196047		NR_002791	ENSG00000229847	EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA
139216	chr2	219287121	219287380	+	0	NA	TTS (NM_006736)	TTS (NM_006736)	6950	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
100435	chr17	60971801	60972100	+	0	NA	intron (NM_001353144, intron 14 of 25)	HERVL40-int|LTR|ERVL	294099	NM_001330414	54828		NM_017679	ENSG00000141376	BCAS3	GAOB1|HEMARS|MAAB|PHAF2	BCAS3 microtubule associated cell migration factor	protein-coding
138699	chr2	213104071	213105030	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	45887	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
235765	chrX	49041301	49041500	+	0	NA	intron (NM_001282142, intron 1 of 9)	intron (NM_001282142, intron 1 of 9)	1957	NM_006521	7030		NM_006521	ENSG00000068323	TFE3	MRXSPF|RCCP2|RCCX1|TFEA|bHLHe33	transcription factor binding to IGHM enhancer 3	protein-coding
146199	chr20	48774151	48775450	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	53199	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
208697	chr7	73280971	73281130	+	0	NA	Intergenic	Intergenic	27776	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
80347	chr16	2488201	2488480	+	0	NA	intron (NM_001199107, intron 1 of 7)	intron (NM_001199107, intron 1 of 7)	13213	NM_020705	57465		NM_020705	ENSG00000162065	TBC1D24	DEE16|DFNA65|DFNB86|DOORS|EIEE16|EIM|EPRPDC|FIME|TLDC6	TBC1 domain family member 24	protein-coding
220942	chr8	108722951	108723130	+	0	NA	intron (NR_136411, intron 1 of 3)	MIRb|SINE|MIR	64554	NR_136411	157753		NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
144507	chr20	35692351	35693330	+	0	NA	intron (NR_037570, intron 4 of 13)	AluSx1|SINE|Alu	6512	NR_037570	9054		NM_021100	ENSG00000244005	NFS1	COXPD52|HUSSY-08|IscS|NIFS	NFS1 cysteine desulfurase	protein-coding
67513	chr14	70977671	70977830	+	0	NA	exon (NM_001308160, exon 6 of 34)	exon (NM_001308160, exon 6 of 34)	70291	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
212299	chr7	124764551	124765330	+	0	NA	exon (NM_005302, exon 1 of 2)	exon (NM_005302, exon 1 of 2)	852	NM_005302	2861		NM_005302	ENSG00000170775	GPR37	EDNRBL|PAELR|hET(B)R-LP	G protein-coupled receptor 37	protein-coding
163415	chr3	50552371	50552530	+	0	NA	Intergenic	Intergenic	15297	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
12228	chr1	100413071	100413830	+	0	NA	intron (NM_001319210, intron 4 of 16)	intron (NM_001319210, intron 4 of 16)	60944	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
93561	chr17	19078121	19078630	+	0	NA	Intergenic	Intergenic	-11068	NR_164158	102724624		NR_164158		LOC102724624	-	uncharacterized protein ENSP00000382042-like	ncRNA
120192	chr19	42276301	42277130	+	0	NA	intron (NM_001379480, intron 2 of 20)	intron (NM_001379480, intron 2 of 20)	7463	NM_001379482	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
227641	chr9	92950371	92951400	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	3362	NM_001083536	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
62189	chr13	97582251	97582550	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	148231	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
211975	chr7	112869051	112869430	+	0	NA	intron (NM_152556, intron 3 of 4)	L1PA17|LINE|L1	70635	NM_152556	154743		NM_152556	ENSG00000164603	BMT2	C7orf60|SAMTOR	base methyltransferase of 25S rRNA 2 homolog	protein-coding
90630	chr17	1653801	1654250	+	0	NA	intron (NM_006445, intron 37 of 42)	intron (NM_006445, intron 37 of 42)	-4159	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
7101	chr1	32109181	32110030	+	0	NA	intron (NM_012316, intron 1 of 13)	(TGTTT)n|Simple_repeat|Simple_repeat	1549	NM_012316	23633		NM_012316	ENSG00000025800	KPNA6	IPOA7	karyopherin subunit alpha 6	protein-coding
9969	chr1	54808721	54808980	+	0	NA	intron (NM_001110533, intron 4 of 9)	intron (NM_001110533, intron 4 of 9)	2787	NM_001110533	163747		NM_152607	ENSG00000162398	CIMAP2	C1orf177|LEM|LEXM	ciliary microtubule associated protein 2	protein-coding
175050	chr4	53362251	53362580	+	0	NA	intron (NM_152540, intron 1 of 8)	L2a|LINE|L2	3646	NM_152540	152579		NM_152540	ENSG00000184178	SCFD2	STXBP1L1	sec1 family domain containing 2	protein-coding
232868	chr9	136809351	136809450	+	0	NA	promoter-TSS (NR_024580)	promoter-TSS (NR_024580)	-552	NR_024580	100131193		NR_024580	ENSG00000228544	CCDC183-AS1	KIAA1984-AS1	CCDC183 antisense RNA 1	ncRNA
88364	chr16	84585801	84586530	+	0	NA	intron (NM_021149, intron 3 of 3)	MLT1K|LTR|ERVL-MaLR	31913	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
39885	chr11	62492351	62492650	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	53164	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
23296	chr1	228066151	228066450	+	0	NA	Intergenic	Intergenic	10250	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
2717	chr1	10654501	10654750	+	0	NA	intron (NM_017766, intron 9 of 15)	CpG-423	142021	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
120049	chr19	41996951	41997730	+	0	NA	TTS (NM_002088)	TTS (NM_002088)	-3110	NM_152296	478		NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DEE99|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding
149435	chr21	31397771	31398530	+	0	NA	intron (NM_001353690, intron 1 of 27)	intron (NM_001353690, intron 1 of 27)	-53796	NM_001353687	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
150385	chr21	42290501	42290900	+	0	NA	intron (NM_207628, intron 13 of 16)	intron (NM_207628, intron 13 of 16)	24709	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
40684	chr11	64768951	64769580	+	0	NA	exon (NM_001346363, exon 7 of 13)	exon (NM_001346363, exon 7 of 13)	8496	NM_001178031	7536		NM_004630	ENSG00000168066	SF1	BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162	splicing factor 1	protein-coding
217944	chr8	38152821	38153080	+	0	NA	Intergenic	Intergenic	-1998	NM_000349	6770		NM_000349	ENSG00000147465	STAR	STARD1	steroidogenic acute regulatory protein	protein-coding
166778	chr3	122473001	122473200	+	0	NA	intron (NM_002264, intron 2 of 13)	AluSz6|SINE|Alu	41839	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
98679	chr17	47854901	47855500	+	0	NA	intron (NM_199262, intron 1 of 1)	intron (NM_199262, intron 1 of 1)	497	NM_199262	80320		NM_199262	ENSG00000189120	SP6	AI1K|EPFN|EPIPROFIN|KLF14	Sp6 transcription factor	protein-coding
215236	chr7	156892351	156894000	+	0	NA	promoter-TSS (NM_001363409)	promoter-TSS (NM_001363409)	8	NM_001363412	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
114400	chr19	12619451	12619550	+	0	NA	intron (NM_153358, intron 1 of 3)	AluYf1|SINE|Alu	8580	NM_153358	163049		NM_153358	ENSG00000173875	ZNF791	-	zinc finger protein 791	protein-coding
32907	chr10	110176121	110176430	+	0	NA	Intergenic	Intergenic	-24295	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
92277	chr17	8069351	8069850	+	0	NA	Intergenic	Intergenic	18116	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
20527	chr1	198685301	198685550	+	0	NA	intron (NM_002838, intron 2 of 32)	MIR|SINE|MIR	46385	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
173318	chr4	7523471	7523630	+	0	NA	intron (NM_020777, intron 2 of 26)	intron (NM_020777, intron 2 of 26)	63522	NR_036238	100422826		NR_036238	ENSG00000266690	MIR4274	-	microRNA 4274	ncRNA
48392	chr12	9633821	9634630	+	0	NA	intron (NR_046448, intron 1 of 4)	intron (NR_046448, intron 1 of 4)	806	NR_046448	374443		NR_002814	ENSG00000291107	LOC374443	-	C-type lectin domain family 2 member D pseudogene	pseudo
161540	chr3	42648871	42649230	+	0	NA	TTS (NM_001349125)	TTS (NM_001349125)	-4647	NM_145166	92999		NM_145166	ENSG00000114853	ZBTB47	ZNF651	zinc finger and BTB domain containing 47	protein-coding
51258	chr12	51046621	51046880	+	0	NA	Intergenic	Intergenic	-1470	NR_147098	25875		NM_015416	ENSG00000050426	LETMD1	1110019O13Rik|HCCR|HCCR-1|HCCR-2|HCCR1|HCCR2|HCRR-2|SLC55A3	LETM1 domain containing 1	protein-coding
230738	chr9	128852021	128852280	+	0	NA	intron (NM_001352995, intron 1 of 14)	HERVK-int|LTR|ERVK	-6400	NM_001352993	883		NM_004059	ENSG00000171097	KYAT1	CCBL1|GTK|KAT1|KATI	kynurenine aminotransferase 1	protein-coding
105468	chr17	83060421	83060700	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-8750	NM_001009905	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
201799	chr6	149995301	149995500	+	0	NA	Intergenic	Intergenic	9744	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
152083	chr22	19759221	19759950	+	0	NA	5' UTR (NM_005992, exon 2 of 10)	5' UTR (NM_005992, exon 2 of 10)	-1193	NM_001379200	6899		NM_005992	ENSG00000184058	TBX1	CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS	T-box transcription factor 1	protein-coding
16211	chr1	153882551	153882750	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	40322	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
131797	chr2	98516501	98516900	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	70690	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
659	chr1	1361301	1361700	+	0	NA	5' UTR (NM_001282583, exon 1 of 10)	5' UTR (NM_001282583, exon 1 of 10)	299	NM_001282583	54587		NM_032348	ENSG00000162576	MXRA8	ASP3	matrix remodeling associated 8	protein-coding
79904	chr16	1635171	1635330	+	0	NA	intron (NM_020825, intron 4 of 20)	intron (NM_020825, intron 4 of 20)	22890	NM_020825	57585		NM_020825	ENSG00000007545	CRAMP1	CRAMP1L|HN1L|TCE4	cramped chromatin regulator homolog 1	protein-coding
45014	chr11	117011171	117012130	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	86778	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
202108	chr6	154744171	154744700	+	0	NA	intron (NM_001286189, intron 3 of 21)	intron (NM_001286189, intron 3 of 21)	11019	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
91651	chr17	5488301	5488500	+	0	NA	5' UTR (NM_001258219, exon 2 of 3)	5' UTR (NM_001258219, exon 2 of 3)	1507	NM_024039	79003		NM_024039	ENSG00000167842	MIS12	2510025F08Rik|KNTC2AP|MTW1|hMis12	MIS12 kinetochore complex component	protein-coding
95659	chr17	38254021	38254280	+	0	NA	intron (NR_036750, intron 1 of 11)	AluYc|SINE|Alu	3099	NR_036750	440434		NR_036750	ENSG00000291088	NPEPPSP1	NPEPPSL1	NPEPPS pseudogene 1	pseudo
74961	chr15	63822651	63823430	+	0	NA	intron (NM_003922, intron 1 of 77)	L2a|LINE|L2	10908	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
159899	chr3	16900771	16902250	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	16555	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
119819	chr19	41350601	41352100	+	0	NA	intron (NM_000660, intron 1 of 6)	CpG	2572	NM_000660	7040		NM_000660	ENSG00000105329	TGFB1	CED|DPD1|IBDIMDE|LAP|TGF-beta1|TGFB|TGFbeta	transforming growth factor beta 1	protein-coding
49466	chr12	25100171	25100330	+	0	NA	intron (NR_159368, intron 15 of 20)	L1M3|LINE|L1	47544	NM_006152	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
232896	chr9	136851271	136851680	+	0	NA	promoter-TSS (NM_206920)	promoter-TSS (NM_206920)	-871	NM_206920	158056		NM_206920	ENSG00000177943	MAMDC4	AEGP|EDTB	MAM domain containing 4	protein-coding
217022	chr8	23222471	23222630	+	0	NA	intron (NM_003844, intron 1 of 9)	intron (NM_003844, intron 1 of 9)	2552	NM_003844	8797		NM_003844	ENSG00000104689	TNFRSF10A	APO2|CD261|DR4|TRAILR-1|TRAILR1	TNF receptor superfamily member 10a	protein-coding
13370	chr1	113903221	113903900	+	0	NA	intron (NM_006594, intron 2 of 10)	L2c|LINE|L2	-1059	NM_001319947	64858		NM_022836	ENSG00000118655	DCLRE1B	APOLLO|DKCB8|SNM1B|SNMIB	DNA cross-link repair 1B	protein-coding
168972	chr3	152394351	152394650	+	0	NA	intron (NM_001376837, intron 2 of 9)	MIR|SINE|MIR	-53510	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
258	chr1	919021	919280	+	0	NA	intron (NR_122045, intron 1 of 3)	L2c|LINE|L2	542	NR_122045	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
190120	chr5	177980171	177980600	+	0	NA	Intergenic	Intergenic	15857	NM_006261	5626		NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
22231	chr1	212600071	212600780	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	-8336	NM_001674	467		NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
87572	chr16	72400451	72400550	+	0	NA	intron (NR_126330, intron 7 of 13)	MER119|DNA|hAT-Charlie	-228050	NM_001160213	83449		NM_031293	ENSG00000118557	PMFBP1	SPGF31|STAP	polyamine modulated factor 1 binding protein 1	protein-coding
185970	chr5	133106901	133107650	+	0	NA	TTS (NM_002154)	TTS (NM_002154)	55262	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
152389	chr22	20531101	20531980	+	0	NA	intron (NM_001293237, intron 1 of 16)	MIRb|SINE|MIR	23493	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
120227	chr19	42314701	42315400	+	0	NA	exon (NM_001366910, exon 6 of 15)	exon (NM_001366910, exon 6 of 15)	1741	NM_173633	284339		NM_173633	ENSG00000167619	TMEM145	-	transmembrane protein 145	protein-coding
122045	chr19	48644351	48645700	+	0	NA	intron (NR_136241, intron 2 of 8)	intron (NR_136241, intron 2 of 8)	1162	NM_001217	770		NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
161273	chr3	39277971	39278930	+	0	NA	intron (NM_001171174, intron 1 of 1)	intron (NM_001171174, intron 1 of 1)	1586	NM_001337	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
126458	chr2	28347751	28348550	+	0	NA	Intergenic	Intergenic	-37691	NR_038319	100505716		NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
105496	chr17	83092021	83092780	+	0	NA	intron (NM_001004431, intron 2 of 3).2	intron (NM_001004431, intron 2 of 3).2	11254	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
81180	chr16	4470101	4470900	+	0	NA	intron (NM_001351995, intron 2 of 5)	intron (NM_001351995, intron 2 of 5)	4125	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
239386	chrY	21240151	21241000	+	0	NA	Intergenic	HERV1_LTRe|LTR|ERV1	145785	NM_001282471	100533178		NM_001282471		PRORY	CYorf17	PRORY Y-linked lncRNA	ncRNA
96245	chr17	39821471	39821730	+	0	NA	intron (NM_001257408, intron 2 of 6)	MER21-int|LTR|ERVL	42588	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
120343	chr19	43573901	43574100	+	0	NA	intron (NM_006297, intron 2 of 16)	MIRb|SINE|MIR	1527	NM_006297	7515		NM_006297	ENSG00000073050	XRCC1	RCC|SCAR26	X-ray repair cross complementing 1	protein-coding
169248	chr3	157153601	157154100	+	0	NA	intron (NM_001308185, intron 3 of 10)	intron (NM_001308185, intron 3 of 10)	6297	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
213482	chr7	139044001	139044900	+	0	NA	promoter-TSS (NR_162108)	promoter-TSS (NR_162108)	-293	NR_162108	113218503		NR_162108		MIR10399	-	microRNA 10399	ncRNA
117929	chr19	33120471	33120700	+	0	NA	intron (NR_135270, intron 18 of 20)	FLAM_C|SINE|Alu	-11529	NR_135565	126248		NM_173479	ENSG00000166359	WDR88	PQWD	WD repeat domain 88	protein-coding
105837	chr18	2985621	2986150	+	0	NA	intron (NM_001375808, intron 1 of 19)	intron (NM_001375808, intron 1 of 19)	26062	NM_014646	9663		NM_014646	ENSG00000101577	LPIN2	CRMO1|MJDS	lipin 2	protein-coding
128173	chr2	51805351	51805450	+	0	NA	intron (NR_135237, intron 6 of 10)	(GTG)n|Simple_repeat|Simple_repeat	-565248	NR_135239	105374596		NR_135239	ENSG00000225444	LINC01867	-	long intergenic non-protein coding RNA 1867	ncRNA
144886	chr20	36927321	36927580	+	0	NA	intron (NM_001363733, intron 5 of 15)	AluSp|SINE|Alu	24258	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
235839	chrX	49876851	49877230	+	0	NA	non-coding (NR_026742, exon 2 of 2)	non-coding (NR_026742, exon 2 of 2)	2316	NR_026742	158572		NM_001025449	ENSG00000234390	USP27X-DT	USP27X-AS1	USP27X divergent transcript	ncRNA
220024	chr8	90649521	90649900	+	0	NA	Intergenic	L2a|LINE|L2	-3627	NM_001008495	169200		NM_001008495	ENSG00000180694	TMEM64	-	transmembrane protein 64	protein-coding
157636	chr22	46112251	46112780	+	0	NA	promoter-TSS (NR_029478)	promoter-TSS (NR_029478)	-234	NR_029478	406883		NR_029478	ENSG00000283990	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	ncRNA
70061	chr14	100140551	100141080	+	0	NA	intron (NM_016337, intron 11 of 13)	intron (NM_016337, intron 11 of 13)	18830	NM_206918	123099		NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding
137008	chr2	190647251	190647430	+	0	NA	Intergenic	Intergenic	-1555	NM_001321313	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
76363	chr15	74594351	74594930	+	0	NA	intron (NM_006465, intron 8 of 8)	intron (NM_006465, intron 8 of 8)	-13732	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
198825	chr6	109089121	109089380	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	5596	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
6774	chr1	30752171	30752900	+	0	NA	intron (NM_006762, intron 1 of 7)	L2c|LINE|L2	5239	NM_006762	7805		NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding
32336	chr10	102239371	102240280	+	0	NA	intron (NM_005029, intron 1 of 3)	intron (NM_005029, intron 1 of 3)	1687	NM_005029	5309		NM_005029	ENSG00000107859	PITX3	ASGD1|ASMD|ASOD|CTPP4|CTRCT11|PTX3	paired like homeodomain 3	protein-coding
33856	chr10	124387221	124387730	+	0	NA	Intergenic	Intergenic	31448	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
232437	chr9	136109001	136111400	+	0	NA	Intergenic	Intergenic	-7592	NR_165242	107987142		NR_165240		LOC107987142	-	uncharacterized LOC107987142	ncRNA
102439	chr17	75680571	75680730	+	0	NA	intron (NR_126036, intron 3 of 9)	intron (NR_126036, intron 3 of 9)	13312	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
188209	chr5	150700101	150701750	+	0	NA	intron (NM_018047, intron 1 of 10)	CpG	137	NM_018047	55696		NM_018047	ENSG00000086589	RBM22	Cwc2|ZC3H16|fSAP47	RNA binding motif protein 22	protein-coding
203746	chr7	1157151	1157530	+	0	NA	intron (NM_001365383, intron 3 of 5)	intron (NM_001365383, intron 3 of 5)	2856	NM_001365381	90637		NM_182491	ENSG00000178381	ZFAND2A	AIRAP	zinc finger AN1-type containing 2A	protein-coding
88928	chr16	87827971	87828580	+	0	NA	Intergenic	MER92B|LTR|ERV1	6385	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
146924	chr20	51639221	51639550	+	0	NA	exon (NM_006045, exon 15 of 28)	exon (NM_006045, exon 15 of 28)	-76546	NM_001136021	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
52361	chr12	55647371	55647530	+	0	NA	Intergenic	Intergenic	10558	NM_206899	121130		NM_206899	ENSG00000175398	OR10P1	OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701	olfactory receptor family 10 subfamily P member 1	protein-coding
45837	chr11	119375051	119375600	+	0	NA	intron (NM_004205, intron 1 of 12)	intron (NM_004205, intron 1 of 12)	6365	NM_004205	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
210295	chr7	99440421	99440680	+	0	NA	intron (NM_001318162, intron 1 of 7)	AluJb|SINE|Alu	1174	NM_001318162	10898		NM_006693	ENSG00000160917	CPSF4	CPSF30|NAR|NEB-1|NEB1	cleavage and polyadenylation specific factor 4	protein-coding
75536	chr15	66698471	66698630	+	0	NA	Intergenic	Intergenic	-3686	NM_005585	4091		NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
5020	chr1	24489951	24490050	+	0	NA	Intergenic	LTR12E|LTR|ERV1	-12344	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
234608	chrX	19804871	19805850	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	-5587	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
64125	chr14	22848071	22848850	+	0	NA	TTS (NM_004995)	TTS (NM_004995)	11875	NM_004995	4323		NM_004995	ENSG00000157227	MMP14	MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS	matrix metallopeptidase 14	protein-coding
231088	chr9	129790201	129790950	+	0	NA	Intergenic	Intergenic	-12568	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
105004	chr17	82025851	82026350	+	0	NA	intron (NM_144999, intron 5 of 16)	intron (NM_144999, intron 5 of 16)	2795	NM_144999	201255		NM_144999	ENSG00000169683	LRRC45	-	leucine rich repeat containing 45	protein-coding
225550	chr9	35835071	35835500	+	0	NA	intron (NM_016446, intron 4 of 10)	intron (NM_016446, intron 4 of 10)	6057	NM_001042590	51754		NM_016446	ENSG00000137103	TMEM8B	C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6|NGX6a	transmembrane protein 8B	protein-coding
105331	chr17	82595951	82596050	+	0	NA	intron (NM_004514, intron 8 of 8)	intron (NM_004514, intron 8 of 8)	52444	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
58494	chr12	132160651	132160980	+	0	NA	Intergenic	Intergenic	16358	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
120076	chr19	42084451	42084750	+	0	NA	Intergenic	AluJb|SINE|Alu	8434	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
104890	chr17	81884251	81885450	+	0	NA	Intergenic	Intergenic	-5940	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
10035	chr1	58250451	58250550	+	0	NA	promoter-TSS (NM_001379462)	promoter-TSS (NM_001379462)	3	NM_001379462	1600		NM_021080	ENSG00000173406	DAB1	SCA37	DAB adaptor protein 1	protein-coding
183423	chr5	78320501	78320750	+	0	NA	Intergenic	Intergenic	-25927	NM_001271769	8546		NM_003664	ENSG00000132842	AP3B1	ADTB3|ADTB3A|HPS|HPS2|PE	adaptor related protein complex 3 subunit beta 1	protein-coding
23485	chr1	228633511	228633980	+	0	NA	Intergenic	CpG	-3237	NR_023366	100169755		NR_023366	ENSG00000200381	RNA5S4	RN5S4	RNA, 5S ribosomal 4	rRNA
1906	chr1	6458071	6458430	+	0	NA	intron (NM_031475, intron 12 of 12)	AluSz|SINE|Alu	7923	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
230390	chr9	128099221	128100580	+	0	NA	intron (NR_049766, intron 1 of 9)	intron (NR_049766, intron 1 of 9)	1418	NR_049766	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
182114	chr5	56080521	56081380	+	0	NA	Intergenic	Intergenic	85783	NR_102755	441072		NR_102755	ENSG00000227908	IL6ST-DT	-	IL6ST divergent transcript	ncRNA
234958	chrX	38985401	38985600	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-181617	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
41338	chr11	65922101	65922300	+	0	NA	TTS (NM_006442)	TTS (NM_006442)	2774	NM_006442	10589		NM_006442	ENSG00000175550	DRAP1	NC2-alpha	DR1 associated protein 1	protein-coding
238018	chrX	135051401	135052630	+	0	NA	exon (NM_001134321, exon 1 of 2)	exon (NM_001134321, exon 1 of 2)	120	NM_001078172	26071		NM_015582	ENSG00000203950	RTL8A	CXX1b|FAM127B|MAR8A|SIRH6	retrotransposon Gag like 8A	protein-coding
190773	chr6	504001	504200	+	0	NA	intron (NM_018303, intron 23 of 27)	intron (NM_018303, intron 23 of 27)	112348	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
151863	chr22	18600821	18601350	+	0	NA	Intergenic	Intergenic	10834	NM_015672	85376		NM_015672	ENSG00000275793	RIMBP3	RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A	RIMS binding protein 3	protein-coding
14457	chr1	144416341	144417580	+	0	NA	Intergenic	FLAM_C|SINE|Alu	4384	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
138970	chr2	218273801	218274100	+	0	NA	TTS (NM_001321438)	TTS (NM_001321438)	3431	NM_001077399	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
115587	chr19	15934621	15935400	+	0	NA	promoter-TSS (NM_001128932)	promoter-TSS (NM_001128932)	-144	NM_021187	57834		NM_021187	ENSG00000171903	CYP4F11	CYPIVF11	cytochrome P450 family 4 subfamily F member 11	protein-coding
97467	chr17	43755251	43755750	+	0	NA	exon (NM_025237, exon 2 of 2)	exon (NM_025237, exon 2 of 2)	3291	NM_025237	50964		NM_025237	ENSG00000167941	SOST	CDD|DAND6|SOST1|VBCH	sclerostin	protein-coding
48022	chr12	6941951	6942050	+	0	NA	3' UTR (NM_001940, exon 10 of 10)	3' UTR (NM_001940, exon 10 of 10)	-1438	NM_001301836	113246		NM_138425	ENSG00000111678	C12orf57	C10|GRCC10	chromosome 12 open reading frame 57	protein-coding
65490	chr14	51875071	51875500	+	0	NA	intron (NM_001243774, intron 1 of 2)	MLT1J|LTR|ERVL-MaLR	14673	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
128720	chr2	61766401	61766600	+	0	NA	Intergenic	AluJb|SINE|Alu	87560	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
187083	chr5	140181021	140181550	+	0	NA	intron (NM_032412, intron 1 of 2)	intron (NM_032412, intron 1 of 2)	6097	NM_032412	84418		NM_032412	ENSG00000120306	CYSTM1	C5orf32|ORF1-FL49	cysteine rich transmembrane module containing 1	protein-coding
83436	chr16	27286051	27286550	+	0	NA	intron (NR_037184, intron 2 of 4)	MLT1G|LTR|ERVL-MaLR	-17528	NM_145080	197370		NM_145080	ENSG00000169189	NSMCE1	NSE1	NSE1 homolog, SMC5-SMC6 complex component	protein-coding
33021	chr10	110742621	110742880	+	0	NA	intron (NM_001134363, intron 1 of 13)	intron (NM_001134363, intron 1 of 13)	98414	NM_001134363	282996		NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding
155481	chr22	38499421	38499680	+	0	NA	intron (NM_006386, intron 2 of 12)	intron (NM_006386, intron 2 of 12)	6761	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
181161	chr5	39028271	39028430	+	0	NA	intron (NM_001285439, intron 2 of 38)	AluYa5|SINE|Alu	46049	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
19689	chr1	181031771	181032130	+	0	NA	Intergenic	AluY|SINE|Alu	-1437	NM_001195000	3140		NM_001531	ENSG00000153029	MR1	HLALS	major histocompatibility complex, class I-related	protein-coding
114622	chr19	12979871	12980300	+	0	NA	Intergenic	Intergenic	10467	NM_152654	199699		NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding
14935	chr1	147596071	147596750	+	0	NA	intron (NM_004326, intron 1 of 9)	AluY|SINE|Alu	54909	NM_004326	607		NM_004326	ENSG00000116128	BCL9	LGS	BCL9 transcription coactivator	protein-coding
163293	chr3	50332471	50332650	+	0	NA	intron (NM_001206957, intron 1 of 4)	AluJo|SINE|Alu	-4322	NM_007275	11334		NM_007275	ENSG00000114383	TUSC2	C3orf11|FUS1|PAP|PDAP2	tumor suppressor 2, mitochondrial calcium regulator	protein-coding
196998	chr6	53304571	53305630	+	0	NA	intron (NM_001242830, intron 1 of 6)	SVA_D|Retroposon|SVA	28107	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
29305	chr10	69324151	69325050	+	0	NA	intron (NM_000188, intron 1 of 17)	AluSz|SINE|Alu	5753	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
65465	chr14	51805651	51805750	+	0	NA	Intergenic	Intergenic	-54912	NM_001243773	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
179112	chr4	168831071	168831230	+	0	NA	promoter-TSS (NM_001166110)	promoter-TSS (NM_001166110)	-945	NM_001367569	23022		NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding
38556	chr11	45923971	45924130	+	0	NA	intron (NM_001300722, intron 4 of 14)	intron (NM_001300722, intron 4 of 14)	1394	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
145480	chr20	43839721	43839980	+	0	NA	Intergenic	Charlie21a|DNA|hAT-Charlie	-54868	NR_134577	105372626		NR_134577	ENSG00000233277	LINC01728	-	long intergenic non-protein coding RNA 1728	ncRNA
135209	chr2	159124501	159125100	+	0	NA	intron (NM_001350063, intron 4 of 24)	AluJb|SINE|Alu	-62035	NR_106948	102465535		NR_106948	ENSG00000275141	MIR6888	hsa-mir-6888	microRNA 6888	ncRNA
205207	chr7	7815971	7816530	+	0	NA	intron (NM_001302350, intron 4 of 4)	MIRb|SINE|MIR	-97643	NM_002947	6119		NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding
190674	chr5	181264371	181265380	+	0	NA	TTS (NR_102759)	TTS (NR_102759)	3663	NR_102760	100507602		NR_102759	ENSG00000248275	TRIM52-AS1	-	TRIM52 antisense RNA 1 (head to head)	ncRNA
46049	chr11	122699151	122699700	+	0	NA	intron (NM_032873, intron 1 of 13)	MIRb|SINE|MIR	43703	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
223242	chr8	143619571	143619730	+	0	NA	Intergenic	AluSx|SINE|Alu	-2101	NM_001317783	7264		NM_003313	ENSG00000104522	GFUS	FX|P35B|SDR4E1|TSTA3	GDP-L-fucose synthase	protein-coding
209664	chr7	79235361	79235680	+	0	NA	intron (NM_012301, intron 1 of 21)	L1PA2|LINE|L1	-217437	NR_038346	100505881		NR_038343	ENSG00000234456	MAGI2-AS3	-	MAGI2 antisense RNA 3	ncRNA
77380	chr15	82838051	82838900	+	0	NA	Intergenic	Intergenic	28847	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
11244	chr1	88979471	88979930	+	0	NA	3' UTR (NM_001162536, exon 3 of 3)	3' UTR (NM_001162536, exon 3 of 3)	12929	NM_001162536	494115		NM_019610	ENSG00000213516	RBMXL1	RBM1	RBMX like 1	protein-coding
34549	chr10	133058101	133058580	+	0	NA	Intergenic	Intergenic	28357	NR_111905	100128127		NR_111905		ADGRA1-AS1	GPR123-AS1	ADGRA1 antisense RNA 1	ncRNA
206717	chr7	36533701	36534100	+	0	NA	intron (NM_001177506, intron 16 of 21)	intron (NM_001177506, intron 16 of 21)	66220	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
89987	chr16	89847251	89847750	+	0	NA	intron (NM_032451, intron 2 of 14)	intron (NM_032451, intron 2 of 14)	19025	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
50283	chr12	46365451	46366350	+	0	NA	intron (NM_001307936, intron 6 of 14)	intron (NM_001307936, intron 6 of 14)	6873	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
26478	chr10	17669371	17670230	+	0	NA	intron (NM_001324287, intron 2 of 11)	AluY|SINE|Alu	25649	NM_003473	8027		NM_003473	ENSG00000136738	STAM	STAM-1|STAM1	signal transducing adaptor molecule	protein-coding
35576	chr11	1691971	1692130	+	0	NA	Intergenic	Intergenic	-5145	NM_001012416	440023		NM_001012416	ENSG00000205864	KRTAP5-6	KRTAP5.6	keratin associated protein 5-6	protein-coding
136719	chr2	181173151	181173900	+	0	NA	intron (NR_130784, intron 1 of 4)	MER45C|DNA|hAT-Tip100	49688	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
107872	chr18	55477501	55477780	+	0	NA	intron (NM_001369569, intron 3 of 19)	intron (NM_001369569, intron 3 of 19)	-1581	NR_039754	100616290		NR_039754	ENSG00000264571	MIR4529	-	microRNA 4529	ncRNA
63702	chr14	21103321	21105100	+	0	NA	TTS (NM_001146683)	TTS (NM_001146683)	494	NM_001102454	51222		NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding
203779	chr7	1234751	1235630	+	0	NA	intron (NM_001080461, intron 2 of 2)	CpG-25321	2318	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
124041	chr19	55516621	55518080	+	0	NA	exon (NM_001144950, exon 14 of 14)	exon (NM_001144950, exon 14 of 14)	19783	NM_001370096	646643		NM_001101401	ENSG00000187550	SBK2	SGK069	SH3 domain binding kinase family member 2	protein-coding
133777	chr2	127680071	127680430	+	0	NA	intron (NM_001161404, intron 1 of 9)	intron (NM_001161404, intron 1 of 9)	1536	NM_001161404	55679		NM_017980	ENSG00000072163	LIMS2	LGMD2W|MDRCMTT|PINCH-2|PINCH2	LIM zinc finger domain containing 2	protein-coding
170524	chr3	186572851	186572950	+	0	NA	intron (NR_165643, intron 2 of 9)	MER102b|DNA|hAT-Charlie	2180	NR_165640	51726		NM_016306	ENSG00000090520	DNAJB11	ABBP-2|ABBP2|DJ9|Dj-9|EDJ|ERdj3|ERj3|ERj3p|PKD6|PRO1080|UNQ537	DnaJ heat shock protein family (Hsp40) member B11	protein-coding
187389	chr5	141880951	141881930	+	0	NA	Intergenic	Intergenic	-3030	NM_002587	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
196966	chr6	52997751	52997850	+	0	NA	Intergenic	Intergenic	2180	NR_001445	125050		NR_001445	ENSG00000202198	RN7SK	7SK	RNA component of 7SK nuclear ribonucleoprotein	snRNA
72376	chr15	31364321	31364880	+	0	NA	intron (NM_001302461, intron 1 of 1).3	intron (NM_001302461, intron 1 of 1).3	37765	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
29456	chr10	70475001	70475400	+	0	NA	Intergenic	MIRb|SINE|MIR	-3567	NM_014431	27143		NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	phosphatase domain containing paladin 1	protein-coding
210413	chr7	100040621	100040980	+	0	NA	non-coding (NR_144477, exon 7 of 7)	non-coding (NR_144477, exon 7 of 7)	-8974	NM_001362781	7589		NM_145914	ENSG00000166529	ZSCAN21	NY-REN-21|ZNF38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding
239501	chrY	56760371	56761300	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-193420	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
185699	chr5	132000751	132001730	+	0	NA	intron (NM_001205250, intron 1 of 20)	intron (NM_001205250, intron 1 of 20)	10418	NM_001205247	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
27088	chr10	27312821	27313450	+	0	NA	intron (NR_138082, intron 4 of 4)	MIRb|SINE|MIR	54373	NR_138082	101060171		NR_138082		ODAD2P1	ARMC4P1	outer dynein arm docking complex subunit 2 pseudogene 1	pseudo
50076	chr12	44821051	44821150	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	54561	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
92757	chr17	15257401	15257620	+	0	NA	intron (NR_104018, intron 1 of 2)	intron (NR_104018, intron 1 of 2)	3310	NM_153322	5376		NM_000304	ENSG00000109099	PMP22	CIDP|CMT1A|CMT1E|DSS|GAS-3|GAS3|HMSNIA|HNPP|Sp110	peripheral myelin protein 22	protein-coding
81833	chr16	11575201	11576030	+	0	NA	intron (NR_024320, intron 1 of 3)	intron (NR_024320, intron 1 of 3)	10758	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
198792	chr6	108921421	108922050	+	0	NA	intron (NM_001286609, intron 9 of 16)	intron (NM_001286609, intron 9 of 16)	2368	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA
51778	chr12	53337901	53339250	+	0	NA	intron (NM_001300837, intron 1 of 2)	intron (NM_001300837, intron 1 of 2)	-2221	NM_001173467	121340		NM_152860	ENSG00000170374	SP7	OI11|OI12|OSX|osterix	Sp7 transcription factor	protein-coding
82491	chr16	17364171	17365580	+	0	NA	intron (NM_022166, intron 1 of 11)	MER5A|DNA|hAT-Charlie	106085	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
82805	chr16	21470401	21471000	+	0	NA	intron (NR_027155, intron 9 of 28)	intron (NR_027155, intron 9 of 28)	-30826	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
62387	chr13	99265421	99266200	+	0	NA	intron (NR_026644, intron 4 of 8)	intron (NR_026644, intron 4 of 8)	-7382	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
213995	chr7	142856571	142856730	+	0	NA	intron (NM_004445, intron 1 of 19).2	intron (NM_004445, intron 1 of 19).2	1574	NM_004445	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
175444	chr4	71189601	71189800	+	0	NA	intron (NM_001134742, intron 1 of 24)	intron (NM_001134742, intron 1 of 24)	2441	NM_001098484	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
137464	chr2	197051101	197051300	+	0	NA	intron (NM_001195144, intron 16 of 27)	AluJb|SINE|Alu	-124493	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
115806	chr19	16419701	16419900	+	0	NA	intron (NM_021235, intron 10 of 22)	intron (NM_021235, intron 10 of 22)	52170	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
113145	chr19	8336371	8336530	+	0	NA	intron (NM_198471, intron 2 of 10)	intron (NM_198471, intron 2 of 10)	6812	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
80149	chr16	2090151	2090480	+	0	NA	promoter-TSS (NR_030646)	promoter-TSS (NR_030646)	-31	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
98861	chr17	48488701	48489000	+	0	NA	Intergenic	Intergenic	42161	NM_002144	3211		NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding
131542	chr2	96738521	96738780	+	0	NA	intron (NM_030805, intron 1 of 7)	AluJr|SINE|Alu	1414	NM_030805	81562		NM_030805	ENSG00000114988	LMAN2L	MRD69|MRT52|VIPL	lectin, mannose binding 2 like	protein-coding
49280	chr12	19678471	19679230	+	0	NA	Intergenic	L1PB1|LINE|L1	238251	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
99452	chr17	50139151	50139250	+	0	NA	intron (NM_032595, intron 7 of 9)	intron (NM_032595, intron 7 of 9)	-9040	NM_174920	201191		NM_174920	ENSG00000167100	SAMD14	-	sterile alpha motif domain containing 14	protein-coding
229682	chr9	124617501	124617850	+	0	NA	intron (NM_033334, intron 2 of 9)	intron (NM_033334, intron 2 of 9)	-40761	NR_038975	100379345		NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA
171726	chr3	197949321	197950780	+	0	NA	promoter-TSS (NM_001323030)	promoter-TSS (NM_001323030)	-125	NM_001134435	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
141117	chr2	238878901	238879100	+	0	NA	intron (NM_001271893, intron 1 of 1)	intron (NM_001271893, intron 1 of 1)	30915	NM_001271893	117581		NM_057179	ENSG00000233608	TWIST2	AMS|BBRSAY|DERMO1|FFDD3|SETLSS|bHLHa39	twist family bHLH transcription factor 2	protein-coding
116061	chr19	17224401	17224980	+	0	NA	Intergenic	AluY|SINE|Alu	-1536	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
206560	chr7	35653951	35654050	+	0	NA	intron (NM_022373, intron 5 of 8)	AluJo|SINE|Alu	41135	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
209763	chr7	87215451	87215550	+	0	NA	intron (NR_138030, intron 1 of 3)	MER33|DNA|hAT-Charlie	4232	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
63348	chr13	114028321	114028880	+	0	NA	intron (NM_001320822, intron 5 of 23).2	intron (NM_001320822, intron 5 of 23).2	49355	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
99234	chr17	49679371	49679600	+	0	NA	Intergenic	AluY|SINE|Alu	-1322	NM_001007226	8405		NM_003563	ENSG00000121067	SPOP	BTBD32|NEDMACE|NEDMIDF|NSDVS1|NSDVS2|TEF2	speckle type BTB/POZ protein	protein-coding
98168	chr17	46082351	46082750	+	0	NA	intron (NM_015443, intron 3 of 14).2	intron (NM_015443, intron 3 of 14).2	83300	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
55949	chr12	109998601	110001130	+	0	NA	intron (NM_033121, intron 1 of 14)	intron (NM_033121, intron 1 of 14)	435	NM_033121	88455		NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding
123927	chr19	55367251	55367650	+	0	NA	intron (NM_001267718, intron 3 of 3)	AluSp|SINE|Alu	3013	NM_001267718	3589		NM_000641	ENSG00000095752	IL11	AGIF|IL-11	interleukin 11	protein-coding
98400	chr17	46577471	46577830	+	0	NA	intron (NM_001039083, intron 1 of 3).2	L1ME3A|LINE|L1	2041	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
51941	chr12	53738251	53739190	+	0	NA	Intergenic	Intergenic	-11268	NM_001143682	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
44707	chr11	111591151	111591580	+	0	NA	Intergenic	L2c|LINE|L2	-11084	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
54976	chr12	96322101	96322300	+	0	NA	intron (NM_002595, intron 3 of 16)	MER63C|DNA|hAT-Blackjack	66702	NM_001303511	2004		NM_005230	ENSG00000111145	ELK3	ERP|NET|SAP-2|SAP2	ETS transcription factor ELK3	protein-coding
182636	chr5	67005851	67006600	+	0	NA	intron (NM_001290227, intron 2 of 25)	intron (NM_001290227, intron 2 of 25)	1570	NM_001290227	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
30488	chr10	79265821	79266080	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-81519	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
136687	chr2	181121671	181122530	+	0	NA	Intergenic	Intergenic	-1737	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
206689	chr7	36503321	36503580	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	96670	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
148187	chr20	63547371	63547980	+	0	NA	promoter-TSS (NM_080823)	promoter-TSS (NM_080823)	-171	NM_080823	6725		NM_080823	ENSG00000125508	SRMS	C20orf148|PTK70|SRM|dJ697K14.1	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding
202824	chr6	159710701	159711890	+	0	NA	intron (NM_001322817, intron 3 of 7)	intron (NM_001322817, intron 3 of 7)	15655	NM_001322820	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
28139	chr10	43440351	43440650	+	0	NA	intron (NM_001355444, intron 1 of 3)	AluSx|SINE|Alu	3389	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
114457	chr19	12720471	12721580	+	0	NA	intron (NM_001382240, intron 2 of 25)	CpG	1234	NM_001382242	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
166982	chr3	125757151	125757250	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-17514	NR_153417	105374312		NR_153417	ENSG00000272840	LOC105374312	-	uncharacterized LOC105374312	ncRNA
130544	chr2	85678751	85679680	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-10474	NM_198843	6439		NM_000542	ENSG00000168878	SFTPB	PSP-B|SFTB3|SFTP3|SMDP1|SP-B	surfactant protein B	protein-coding
159371	chr3	13344721	13344980	+	0	NA	intron (NM_024923, intron 20 of 39)	L2c|LINE|L2	-61593	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
52871	chr12	57179971	57180130	+	0	NA	exon (NM_002332, exon 31 of 89)	exon (NM_002332, exon 31 of 89)	-14454	NR_031597	100302201		NR_031597	ENSG00000221365	MIR1228	MIRN1228|hsa-mir-1228|mir-1228	microRNA 1228	ncRNA
63506	chr13	114233301	114233850	+	0	NA	Intergenic	LTR24|LTR|ERV1	-1270	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
108140	chr18	62524201	62525330	+	0	NA	intron (NM_017742, intron 1 of 13)	CpG	1740	NR_126534	54877		NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding
67704	chr14	73269821	73270280	+	0	NA	intron (NM_173462, intron 25 of 25)	intron (NM_173462, intron 25 of 25)	-24049	NR_135248	101928123		NR_135248		PAPLN-AS1	-	PAPLN antisense RNA 1	ncRNA
166213	chr3	112043251	112044150	+	0	NA	intron (NM_001366279, intron 1 of 15)	intron (NM_001366279, intron 1 of 15)	722	NM_001366279	344805		NM_001042575	ENSG00000176040	TMPRSS7	-	transmembrane serine protease 7	protein-coding
193918	chr6	31636051	31636400	+	0	NA	exon (NM_080686, exon 26 of 31).2	exon (NM_080686, exon 26 of 31).2	2438	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
35772	chr11	2160901	2161100	+	0	NA	5' UTR (NM_001185098, exon 1 of 2)	5' UTR (NM_001185098, exon 1 of 2)	209	NM_001185097	3630		NM_000207	ENSG00000254647	INS	IDDM|IDDM1|IDDM2|ILPR|IRDN|MODY10|PNDM4	insulin	protein-coding
19381	chr1	174015751	174016250	+	0	NA	intron (NM_172071, intron 1 of 19)	AluSx|SINE|Alu	6357	NM_172071	149041		NM_172071	ENSG00000135870	RC3H1	FHL6|IMDSHY|RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding
208646	chr7	73007151	73007250	+	0	NA	intron (NR_130940, intron 1 of 5)	AluSx1|SINE|Alu	1120	NR_130940	100101440		NR_130940		PMS2P7	PMS2L15|PMS2LP2|PMSR7	PMS1 homolog 2, mismatch repair system component pseudogene 7	pseudo
1231	chr1	2280801	2281000	+	0	NA	intron (NM_003036, intron 1 of 6)	CpG	52581	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
135424	chr2	161157401	161157800	+	0	NA	intron (NM_133484, intron 1 of 3)	intron (NM_133484, intron 1 of 3)	-2828	NM_001199135	10010		NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
40643	chr11	64725421	64726780	+	0	NA	TTS (NM_001318398)	TTS (NM_001318398)	-2903	NM_001376267	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
149845	chr21	35043621	35044080	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-4424	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
20170	chr1	192885551	192885730	+	0	NA	Intergenic	Intergenic	62617	NR_126003	102724954		NR_126003		RGS2-AS1	LINC01032	RSG2 antisense RNA 1	ncRNA
149370	chr21	29376551	29376930	+	0	NA	Intergenic	LTR78B|LTR|ERV1	4239	NR_046564	100874322		NR_046564		BACH1-IT2	-	BACH1 intronic transcript 2	ncRNA
198596	chr6	107711601	107712000	+	0	NA	intron (NM_001286409, intron 2 of 3)	intron (NM_001286409, intron 2 of 3)	20350	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
184939	chr5	112988551	112988850	+	0	NA	intron (NM_152624, intron 2 of 10)	intron (NM_152624, intron 2 of 10)	11902	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
175007	chr4	51895721	51896150	+	0	NA	intron (NM_015115, intron 7 of 9)	intron (NM_015115, intron 7 of 9)	52356	NM_001287755	23142		NM_015115	ENSG00000109184	DCUN1D4	DCNL4	defective in cullin neddylation 1 domain containing 4	protein-coding
10258	chr1	64416471	64416630	+	0	NA	Intergenic	AluY|SINE|Alu	-53579	NM_020925	57685		NM_020925	ENSG00000158966	CACHD1	-	cache domain containing 1	protein-coding
91157	chr17	3768351	3769600	+	0	NA	intron (NM_002208, intron 2 of 30)	intron (NM_002208, intron 2 of 30)	32213	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
224480	chr9	16207301	16207500	+	0	NA	intron (NM_001364979, intron 3 of 3)	intron (NM_001364979, intron 3 of 3)	68913	NM_001364979	100129385		NM_001271829	ENSG00000205549	LINC03041	C9orf92|Em:AL513424.1	long intergenic non-protein coding RNA 3041	ncRNA
76873	chr15	77953671	77954450	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-9499	NR_157580	440292		NR_157580		COMMD4P1	-	COMM domain containing 4 pseudogene 1	pseudo
9763	chr1	53393101	53394000	+	0	NA	Intergenic	Intergenic	46470	NR_002314	163742		NM_178501	ENSG00000293253	SLC25A3P1	-	solute carrier family 25 member 3 pseudogene 1	pseudo
52178	chr12	54303821	54304700	+	0	NA	Intergenic	Intergenic	-3223	NM_001261461	4778		NM_006163	ENSG00000123405	NFE2	NF-E2|p45	nuclear factor, erythroid 2	protein-coding
169267	chr3	157437701	157437900	+	0	NA	exon (NM_002852, exon 2 of 3)	exon (NM_002852, exon 2 of 3)	950	NM_002852	5806		NM_002852	ENSG00000163661	PTX3	TNFAIP5|TSG-14	pentraxin 3	protein-coding
7994	chr1	37974301	37974500	+	0	NA	intron (NM_006802, intron 12 of 16)	AluY|SINE|Alu	15622	NM_001320830	10946		NM_006802	ENSG00000183431	SF3A3	PRP9|PRPF9|SAP61|SF3a60	splicing factor 3a subunit 3	protein-coding
131746	chr2	98453071	98453680	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	7365	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
78232	chr15	90660101	90660910	+	0	NA	non-coding (NR_120371, exon 1 of 3)	non-coding (NR_120371, exon 1 of 3)	271	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
234870	chrX	25815151	25815330	+	0	NA	Intergenic	Intergenic	-323103	NM_173699	286514		NM_173699	ENSG00000176774	MAGEB18	-	MAGE family member B18	protein-coding
171522	chr3	196667421	196667680	+	0	NA	Intergenic	Intergenic	27856	NM_198565	375387		NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|SENEBAC|UNQ3030	negative regulator of reactive oxygen species	protein-coding
13401	chr1	113958171	113958330	+	0	NA	exon (NM_001369807, exon 8 of 16)	exon (NM_001369807, exon 8 of 16)	4373	NM_181358	204851		NM_152696	ENSG00000163349	HIPK1	Myak|Nbak2	homeodomain interacting protein kinase 1	protein-coding
4147	chr1	19345621	19345880	+	0	NA	intron (NM_001206540, intron 6 of 9)	intron (NM_001206540, intron 6 of 9)	33424	NM_001287531	54896		NM_017765	ENSG00000040487	SLC66A1	LAAT-1|LAAT1|PQLC2	solute carrier family 66 member 1	protein-coding
13895	chr1	119647871	119648430	+	0	NA	5' UTR (NM_001080470, exon 1 of 3)	5' UTR (NM_001080470, exon 1 of 3)	116	NM_001080470	90874		NM_138366	ENSG00000143067	ZNF697	-	zinc finger protein 697	protein-coding
234345	chrX	15204121	15204380	+	0	NA	Intergenic	Intergenic	65833	NM_024087	140462		NM_024087	ENSG00000102048	ASB9	-	ankyrin repeat and SOCS box containing 9	protein-coding
126183	chr2	26692201	26693050	+	0	NA	promoter-TSS (NM_002246)	promoter-TSS (NM_002246)	-97	NM_002246	3777		NM_002246	ENSG00000171303	KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TASK1|TBAK1	potassium two pore domain channel subfamily K member 3	protein-coding
36180	chr11	3204421	3204680	+	0	NA	Intergenic	Intergenic	-13782	NR_027138	283303		NM_173590	ENSG00000236301	MRGPRG-AS1	C11orf36|HSD-40	MRGPRG antisense RNA 1	ncRNA
144550	chr20	35730371	35730530	+	0	NA	intron (NM_184234, intron 4 of 16)	intron (NM_184234, intron 4 of 16)	11810	NM_001242600	9584		NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding
138858	chr2	216687601	216687930	+	0	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	7784	NM_000599	3488		NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
85854	chr16	57021951	57022730	+	0	NA	intron (NM_001384955, intron 4 of 47)	intron (NM_001384955, intron 4 of 47)	32783	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
208990	chr7	74231101	74231530	+	0	NA	TTS (NM_001278791)	TTS (NM_001278791)	21309	NM_014146	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
45638	chr11	118971751	118972050	+	0	NA	5' UTR (NM_181721, exon 1 of 6)	5' UTR (NM_181721, exon 1 of 6)	139	NM_181721	283150		NM_181721	ENSG00000176302	FOXR1	DLNB13|FOXN5	forkhead box R1	protein-coding
154551	chr22	36196671	36197630	+	0	NA	intron (NM_145660, intron 3 of 4)	intron (NM_145660, intron 3 of 4)	7683	NM_030643	80832		NM_030643	ENSG00000100336	APOL4	APOL-IV|APOLIV	apolipoprotein L4	protein-coding
100845	chr17	64126371	64126730	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	3594	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
179533	chr4	184962821	184963630	+	0	NA	Intergenic	Intergenic	-24785	NR_039660	100616111		NR_039660	ENSG00000263458	MIR4455	-	microRNA 4455	ncRNA
176730	chr4	101335051	101336100	+	0	NA	intron (NM_001130692, intron 1 of 11)	intron (NM_001130692, intron 1 of 11)	-5161	NR_031656	100302193		NR_031656	ENSG00000221265	MIR1255A	MIRN1255A|hsa-mir-1255a	microRNA 1255a	ncRNA
78454	chr15	92845121	92845880	+	0	NA	Intergenic	Intergenic	-37343	NR_037600	100507217		NR_037600		CHASERR	LINC01578	CHD2 adjacent suppressive regulatory RNA	ncRNA
232525	chr9	136329121	136329380	+	0	NA	intron (NM_015597, intron 1 of 8)	intron (NM_015597, intron 1 of 8)	1711	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
100370	chr17	60111601	60112200	+	0	NA	Intergenic	Intergenic	-8981	NR_027408	653653		NR_027408	ENSG00000293358	LOC653653	-	adaptor related protein complex 1 subunit sigma 2 pseudogene	pseudo
21220	chr1	204126921	204127180	+	0	NA	3' UTR (NM_005686, exon 14 of 14)	3' UTR (NM_005686, exon 14 of 14)	-14358	NR_123739	101929441		NR_123739	ENSG00000230550	ERLNC1	ElncRNA1|TC0101441	estrogen receptor responsive lncRNA 1	ncRNA
59640	chr13	28141701	28142330	+	0	NA	intron (NM_175854, intron 1 of 18)	intron (NM_175854, intron 1 of 18)	-2841	NR_029383	100288730		NR_029383		PAN3-AS1	-	PAN3 antisense RNA 1	ncRNA
74802	chr15	63442401	63442600	+	0	NA	Intergenic	Intergenic	52270	NR_120375	102723344		NR_120375		LINC02568	-	long intergenic non-protein coding RNA 2568	ncRNA
123174	chr19	52248271	52248830	+	0	NA	Intergenic	Intergenic	-21037	NM_001010851	90321		NM_001010851	ENSG00000196214	ZNF766	-	zinc finger protein 766	protein-coding
13860	chr1	117673471	117673700	+	0	NA	Intergenic	Intergenic	67537	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
22557	chr1	222615401	222615600	+	0	NA	Intergenic	L2a|LINE|L2	-2597	NM_198551	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
14610	chr1	145288871	145289350	+	0	NA	TTS (NM_001278267)	TTS (NM_001278267)	7994	NR_104075	101954266		NR_104075	ENSG00000207501	RNVU1-14	RNU1-37|vU1.14	RNA, variant U1 small nuclear 14	snRNA
187555	chr5	142781751	142781850	+	0	NA	intron (NM_001349547, intron 1 of 21)	AluSc8|SINE|Alu	10573	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
197291	chr6	71250021	71250280	+	0	NA	Intergenic	L3|LINE|CR1	-38661	NM_001324266	79627		NM_024576	ENSG00000119900	OGFRL1	dJ331H24.1	opioid growth factor receptor like 1	protein-coding
156145	chr22	40173071	40173430	+	0	NA	intron (NM_001024843, intron 4 of 23)	AluSc|SINE|Alu	-4675	NM_001162501	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
235449	chrX	46461551	46461880	+	0	NA	intron (NM_017776, intron 3 of 5)	MER92C|LTR|ERV1	14418	NM_001129898	55634		NM_017776	ENSG00000147121	KRBOX4	ZNF673	KRAB box domain containing 4	protein-coding
105447	chr17	82972471	82973230	+	0	NA	intron (NR_135465, intron 6 of 13)	intron (NR_135465, intron 6 of 13)	34138	NR_135466	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
75474	chr15	65980901	65981300	+	0	NA	intron (NR_169558, intron 6 of 22)	intron (NR_169558, intron 6 of 22)	-59133	NR_036196	100422905		NR_036196	ENSG00000263512	MIR4311	-	microRNA 4311	ncRNA
165954	chr3	107684621	107685230	+	0	NA	intron (NM_020235, intron 3 of 16)	intron (NM_020235, intron 3 of 16)	161963	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
184751	chr5	109849171	109850100	+	0	NA	intron (NM_002372, intron 19 of 21)	L2a|LINE|L2	-33547	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
157755	chr22	46676221	46677150	+	0	NA	intron (NM_015124, intron 18 of 18)	intron (NM_015124, intron 18 of 18)	56299	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
183231	chr5	76364071	76364230	+	0	NA	Intergenic	MER72|LTR|ERV1	-39135	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
123402	chr19	53963201	53963750	+	0	NA	intron (NM_031895, intron 1 of 3)	intron (NM_031895, intron 1 of 3)	538	NM_031895	59283		NM_031895	ENSG00000142408	CACNG8	-	calcium voltage-gated channel auxiliary subunit gamma 8	protein-coding
43751	chr11	86141651	86141950	+	0	NA	Intergenic	Intergenic	-71940	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
55767	chr12	108566001	108566650	+	0	NA	intron (NM_213595, intron 3 of 4)	intron (NM_213595, intron 3 of 4)	3729	NM_213595	23479		NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding
153061	chr22	23288171	23288530	+	0	NA	intron (NM_021574, intron 12 of 21)	intron (NM_021574, intron 12 of 21)	25583	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
152632	chr22	21465721	21465980	+	0	NA	Intergenic	AluJr|SINE|Alu	-1320	NM_001207052	645426		NM_001207052	ENSG00000206140	TMEM191C	-	transmembrane protein 191C	protein-coding
215178	chr7	155677701	155677900	+	0	NA	intron (NM_053043, intron 3 of 17)	intron (NM_053043, intron 3 of 17)	33139	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
60740	chr13	44436751	44437250	+	0	NA	promoter-TSS (NM_006022)	promoter-TSS (NM_006022)	-142	NM_006022	8848		NM_006022	ENSG00000102804	TSC22D1	HUCEP-2|Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding
143060	chr20	21509651	21509950	+	0	NA	Intergenic	CpG	4264	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
5626	chr1	26166151	26166250	+	0	NA	intron (NM_001364667, intron 1 of 2)	intron (NM_001364667, intron 1 of 2)	2382	NM_001364667	110806296		NM_001364667	ENSG00000282872	C1orf232	-	chromosome 1 open reading frame 230	protein-coding
102849	chr17	76480621	76481830	+	0	NA	intron (NM_024599, intron 3 of 18)	intron (NM_024599, intron 3 of 18)	13622	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
232847	chr9	136773701	136774000	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-9332	NM_203347	389812		NM_203347	ENSG00000177984	LCN15	PRO6093|UNQ2541	lipocalin 15	protein-coding
100527	chr17	62477651	62480400	+	0	NA	promoter-TSS (NM_001330418)	promoter-TSS (NM_001330418)	-93	NM_001284333	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
165604	chr3	101674871	101675130	+	0	NA	intron (NM_014415, intron 1 of 10)	AluJb|SINE|Alu	-1430	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
230529	chr9	128361151	128361250	+	0	NA	3' UTR (NM_005094, exon 13 of 13)	3' UTR (NM_005094, exon 13 of 13)	9153	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
88874	chr16	87699801	87700000	+	0	NA	Intergenic	Intergenic	66086	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
191672	chr6	13454401	13455900	+	0	NA	intron (NM_018988, intron 1 of 1)	intron (NM_018988, intron 1 of 1)	16913	NR_038459	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
119420	chr19	40280271	40281380	+	0	NA	intron (NM_001243027, intron 1 of 13)	L2a|LINE|L2	1816	NR_030371	693226		NR_030371	ENSG00000207631	MIR641	MIRN641|hsa-mir-641|mir-641	microRNA 641	ncRNA
18829	chr1	167670751	167671050	+	0	NA	intron (NM_001322923, intron 1 of 5)	L2a|LINE|L2	40668	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
203797	chr7	1252451	1252750	+	0	NA	Intergenic	Intergenic	19728	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
133799	chr2	127803271	127803430	+	0	NA	intron (NM_001006623, intron 1 of 7)	AluSz6|SINE|Alu	7821	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
237892	chrX	131729271	131729430	+	0	NA	intron (NR_152876, intron 8 of 9)	intron (NR_152876, intron 8 of 9)	101293	NR_152876	286467		NR_026975	ENSG00000213468	FIRRE	LINC01200	firre intergenic repeating RNA element	ncRNA
212026	chr7	114929471	114930130	+	0	NA	intron (NM_199072, intron 2 of 4)	intron (NM_199072, intron 2 of 4)	7646	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
39700	chr11	61743171	61743330	+	0	NA	intron (NM_006133, intron 19 of 19)	AluY|SINE|Alu	-9386	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
161718	chr3	43773971	43774130	+	0	NA	Intergenic	Intergenic	-82456	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
159908	chr3	16916901	16917780	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	-15750	NM_015184	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
15980	chr1	151933921	151934340	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-24619	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
87256	chr16	69781021	69781350	+	0	NA	intron (NM_007014, intron 2 of 24)	L2|LINE|L2	18853	NM_001270454	11060		NM_007014	ENSG00000198373	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
68281	chr14	77099971	77100330	+	0	NA	intron (NM_033426, intron 1 of 3)	intron (NM_033426, intron 1 of 3)	1892	NM_033426	85457		NM_033426	ENSG00000198894	CIPC	KIAA1737	CLOCK interacting pacemaker	protein-coding
198568	chr6	107061271	107061900	+	0	NA	Intergenic	Intergenic	33386	NM_001142468	51250		NM_016487	ENSG00000130349	MTRES1	C6orf203|HSPC230|PRED31	mitochondrial transcription rescue factor 1	protein-coding
149527	chr21	32940121	32940630	+	0	NA	Intergenic	Intergenic	-18513	NR_135522	102724502		NR_135522	ENSG00000228961	LINC01690	-	long intergenic non-protein coding RNA 1690	ncRNA
44219	chr11	96331001	96331200	+	0	NA	intron (NM_032427, intron 1 of 4)	AluJb|SINE|Alu	-10338	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
185677	chr5	131747301	131748600	+	0	NA	intron (NM_133372, intron 1 of 17)	intron (NM_133372, intron 1 of 17)	49067	NM_001008738	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
86453	chr16	66929721	66930180	+	0	NA	Intergenic	AluJr|SINE|Alu	-4414	NM_001128850	6236		NM_004165	ENSG00000166592	RRAD	RAD|RAD1|REM3	RRAD, Ras related glycolysis inhibitor and calcium channel regulator	protein-coding
34287	chr10	131920071	131920980	+	0	NA	intron (NM_001291310, intron 3 of 9)	L1MB4|LINE|L1	19517	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
165703	chr3	102106421	102106730	+	0	NA	Intergenic	L1MA8|LINE|L1	-57130	NR_135549	101929411		NR_135549		LOC101929411	-	uncharacterized LOC101929411	ncRNA
38752	chr11	47101351	47101450	+	0	NA	intron (NM_001003676, intron 3 of 7)	intron (NM_001003676, intron 3 of 7)	75479	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
216915	chr8	22704701	22706280	+	0	NA	Intergenic	Intergenic	-12010	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
16842	chr1	155685401	155685600	+	0	NA	intron (NM_139121, intron 1 of 10)	intron (NM_139121, intron 1 of 10)	3156	NM_001198903	55249		NM_018253	ENSG00000163374	YY1AP1	GRNG|HCCA1|HCCA2|YY1AP	YY1 associated protein 1	protein-coding
168788	chr3	152071921	152072230	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	133354	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
2633	chr1	10216301	10217100	+	0	NA	intron (NM_001365952, intron 1 of 48)	intron (NM_001365952, intron 1 of 48)	5084	NM_001365952	23095		NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding
159658	chr3	15345721	15346380	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-4670	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
71298	chr14	105300221	105302580	+	0	NA	promoter-TSS (NM_001519)	promoter-TSS (NM_001519)	-399	NM_001519	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
221022	chr8	116615551	116615670	+	0	NA	Intergenic	(AGAAT)n|Simple_repeat|Simple_repeat	-36490	NR_136278	105375713		NR_136278	ENSG00000289382	LOC105375713	-	uncharacterized LOC105375713	ncRNA
205250	chr7	8120651	8121180	+	0	NA	intron (NR_146928, intron 13 of 14)	intron (NR_146928, intron 13 of 14)	141252	NR_146927	3382		NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
215062	chr7	152785351	152785550	+	0	NA	intron (NR_146950, intron 2 of 10)	GA-rich|Low_complexity|Low_complexity	25698	NM_020445	57180		NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	actin related protein 3B	protein-coding
196809	chr6	46042471	46042730	+	0	NA	intron (NM_001370649, intron 1 of 5)	intron (NM_001370649, intron 1 of 5)	-26711	NM_001256023	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
37163	chr11	13861271	13861850	+	0	NA	intron (NR_149109, intron 3 of 3)	intron (NR_149109, intron 3 of 3)	9056	NR_149109	105376561		NR_149109	ENSG00000254930	LINC02545	-	long intergenic non-protein coding RNA 2545	ncRNA
99950	chr17	57357451	57358100	+	0	NA	intron (NM_170721, intron 4 of 9)	intron (NM_170721, intron 4 of 9)	100756	NM_170721	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
112074	chr19	5296421	5296880	+	0	NA	intron (NM_130853, intron 1 of 28)	L2a|LINE|L2	44162	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
98371	chr17	46411101	46411700	+	0	NA	intron (NR_033799, intron 3 of 6)	THE1B|LTR|ERVL-MaLR	38587	NR_033799	728806		NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo
82780	chr16	21447701	21448530	+	0	NA	intron (NR_027155, intron 27 of 28)	intron (NR_027155, intron 27 of 28)	-13660	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
66424	chr14	61522971	61523650	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	46884	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
219353	chr8	70332701	70332900	+	0	NA	intron (NM_001321703, intron 1 of 22)	intron (NM_001321703, intron 1 of 22)	70590	NM_001321707	10499		NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
38272	chr11	39375171	39375400	+	0	NA	Intergenic	Intergenic	726427	NR_120553	101928536		NR_120553	ENSG00000254562	LINC01493	-	long intergenic non-protein coding RNA 1493	ncRNA
17507	chr1	156743121	156743780	+	0	NA	exon (NM_004494, exon 6 of 6)	exon (NM_004494, exon 6 of 6)	-2362	NM_145729	79590		NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24|uL24m	mitochondrial ribosomal protein L24	protein-coding
94015	chr17	26885351	26885650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	203741	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
95896	chr17	38888851	38889400	+	0	NA	intron (NM_001271608, intron 2 of 5)	AluSx4|SINE|Alu	19067	NR_073384	3927		NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
169139	chr3	156151751	156152150	+	0	NA	intron (NM_003471, intron 1 of 13)	intron (NM_003471, intron 1 of 13)	8988	NM_003471	7881		NM_003471	ENSG00000169282	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel subfamily A regulatory beta subunit 1	protein-coding
201777	chr6	149960951	149961050	+	0	NA	Intergenic	Intergenic	-2943	NM_001317089	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
176398	chr4	88820051	88820850	+	0	NA	intron (NM_014883, intron 7 of 23)	intron (NM_014883, intron 7 of 23)	2911	NM_001265578	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
98902	chr17	48591571	48591730	+	0	NA	promoter-TSS (NR_110329)	promoter-TSS (NR_110329)	-642	NR_033204	404266		NR_033201	ENSG00000233101	HOXB-AS3	-	HOXB cluster antisense RNA 3	ncRNA
229033	chr9	114321951	114322250	+	0	NA	promoter-TSS (NM_000607)	promoter-TSS (NM_000607)	-998	NM_000607	5004		NM_000607	ENSG00000229314	ORM1	A1AG1|AGP-A|AGP1|HEL-S-153w|ORM	orosomucoid 1	protein-coding
131779	chr2	98484901	98485700	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	39290	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
87776	chr16	75385501	75385850	+	0	NA	intron (NM_006324, intron 5 of 6)	intron (NM_006324, intron 5 of 6)	47828	NM_006324	10428		NM_006324	ENSG00000153774	CFDP1	BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97	craniofacial development protein 1	protein-coding
83574	chr16	28140671	28141600	+	0	NA	intron (NM_001270940, intron 10 of 24)	intron (NM_001270940, intron 10 of 24)	70830	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
186225	chr5	134392721	134392980	+	0	NA	TTS (NM_003337)	TTS (NM_003337)	19031	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
13529	chr1	114947671	114947830	+	0	NA	intron (NM_003176, intron 27 of 31)	AluY|SINE|Alu	-82076	NM_000549	7252		NM_000549	ENSG00000134200	TSHB	TSH-B|TSH-BETA	thyroid stimulating hormone subunit beta	protein-coding
43271	chr11	75667951	75669180	+	0	NA	promoter-TSS (NM_033063)	promoter-TSS (NM_033063)	-131	NM_033063	4135		NM_033063	ENSG00000171533	MAP6	MAP6-N|MTAP6|N-STOP|STOP	microtubule associated protein 6	protein-coding
234521	chrX	19566301	19567180	+	0	NA	intron (NM_001353892, intron 14 of 17)	intron (NM_001353892, intron 14 of 17)	-51479	NM_001001671	389840		NM_001001671	ENSG00000180815	MAP3K15	ASK3|bA723P2.3	mitogen-activated protein kinase kinase kinase 15	protein-coding
36833	chr11	10173351	10173730	+	0	NA	intron (NM_030962, intron 2 of 39)	L1PA3|LINE|L1	120667	NM_030962	81846		NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
1120	chr1	2126071	2126230	+	0	NA	intron (NM_001033582, intron 1 of 14)	intron (NM_001033582, intron 1 of 14)	21434	NM_001033582	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
52003	chr12	53970251	53970500	+	0	NA	intron (NR_047517, intron 1 of 5)	intron (NR_047517, intron 1 of 5)	-1461	NR_047518	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
193692	chr6	31117471	31117630	+	0	NA	intron (NM_001264, intron 1 of 1)	intron (NM_001264, intron 1 of 1)	2750	NM_014068	170679		NM_014068	ENSG00000204540	PSORS1C1	C6orf16|SEEK1	psoriasis susceptibility 1 candidate 1	protein-coding
152555	chr22	21010551	21011050	+	0	NA	TTS (NR_027051)	TTS (NR_027051)	3487	NR_003608	113691		NR_003608	ENSG00000284130	TUBA3FP	-	tubulin alpha 3f pseudogene	pseudo
106933	chr18	26337171	26337330	+	0	NA	intron (NM_001293725, intron 13 of 14)	intron (NM_001293725, intron 13 of 14)	-85745	NR_110762	100506787		NR_110762		LINC01543	-	long intergenic non-protein coding RNA 1543	ncRNA
121929	chr19	48450671	48451100	+	0	NA	intron (NM_031485, intron 5 of 6)	MSR1|Satellite|Satellite	-4689	NM_013348	3770		NM_013348	ENSG00000182324	KCNJ14	IRK4|KIR2.4	potassium inwardly rectifying channel subfamily J member 14	protein-coding
190218	chr5	178231901	178233230	+	0	NA	non-coding (NR_103510, exon 1 of 14)	non-coding (NR_103510, exon 1 of 14)	237	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
214573	chr7	150612801	150613400	+	0	NA	Intergenic	Intergenic	19285	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
115969	chr19	17000521	17000780	+	0	NA	intron (NM_015692, intron 9 of 41)	intron (NM_015692, intron 9 of 41)	26160	NR_165644	27151		NM_015692	ENSG00000160111	CPAMD8	ASGD8|K-CAP|VIP	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein-coding
33699	chr10	120852921	120853180	+	0	NA	intron (NM_018117, intron 2 of 28)	intron (NM_018117, intron 2 of 28)	1688	NM_018117	55717		NM_018117	ENSG00000120008	WDR11	BRWD2|DR11|HH14|SRI1|WDR15	WD repeat domain 11	protein-coding
51035	chr12	49762001	49762400	+	0	NA	intron (NM_001098576, intron 9 of 9)	intron (NM_001098576, intron 9 of 9)	20391	NM_001098576	7009		NM_003217	ENSG00000139644	TMBIM6	BAXI1|BI-1|TEGT	transmembrane BAX inhibitor motif containing 6	protein-coding
180759	chr5	32151351	32151450	+	0	NA	intron (NM_022130, intron 1 of 3)	AluJr|SINE|Alu	22919	NM_022130	64083		NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding
75732	chr15	68228771	68230680	+	0	NA	promoter-TSS (NM_017882)	promoter-TSS (NM_017882)	3	NM_017882	54982		NM_017882	ENSG00000128973	CLN6	CLN4A|CLN6A|HsT18960|nclf	CLN6 transmembrane ER protein	protein-coding
225507	chr9	35689271	35689780	+	0	NA	intron (NM_213674, intron 1 of 8)	intron (NM_213674, intron 1 of 8)	400	NM_003289	7169		NM_003289	ENSG00000198467	TPM2	AMCD1|CMYP23|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB	tropomyosin 2	protein-coding
138677	chr2	213027251	213027350	+	0	NA	intron (NM_001371277, intron 5 of 6)	HAL1|LINE|L1	-100964	NR_039936	100616472		NR_039936	ENSG00000283637	MIR4776-2	mir-4776-2	microRNA 4776-2	ncRNA
208679	chr7	73229121	73229750	+	0	NA	intron (NR_003186, intron 3 of 7)	intron (NR_003186, intron 3 of 7)	8796	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
146177	chr20	48749271	48750130	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	78299	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
90915	chr17	2562621	2562880	+	0	NA	Intergenic	L2c|LINE|L2	-30904	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
76001	chr15	70825251	70825350	+	0	NA	Intergenic	Intergenic	-27939	NM_001284357	54839		NM_017691	ENSG00000137821	LRRC49	CSTPP2|PGs4	leucine rich repeat containing 49	protein-coding
143119	chr20	23421101	23422530	+	0	NA	promoter-TSS (NM_001283018)	promoter-TSS (NM_001283018)	-296	NM_001283020	63908		NM_022080	ENSG00000125814	NAPB	DEE107|SNAP-BETA|SNAPB	NSF attachment protein beta	protein-coding
42567	chr11	71928051	71929450	+	0	NA	promoter-TSS (NM_018320)	promoter-TSS (NM_018320)	28	NR_024148	55298		NM_018320	ENSG00000137522	RNF121	-	ring finger protein 121	protein-coding
70303	chr14	101809301	101810590	+	0	NA	promoter-TSS (NM_001352912)	promoter-TSS (NM_001352912)	82	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
25923	chr10	11326421	11326680	+	0	NA	intron (NM_001326330, intron 12 of 12)	intron (NM_001326330, intron 12 of 12)	18124	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
163326	chr3	50371301	50371700	+	0	NA	intron (NM_006030, intron 22 of 37)	intron (NM_006030, intron 22 of 37)	6137	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
72866	chr15	40274601	40275300	+	0	NA	intron (NM_001128628, intron 10 of 10)	intron (NM_001128628, intron 10 of 10)	7636	NM_001190479	100131244		NM_001190479	ENSG00000230778	ANKRD63	-	ankyrin repeat domain 63	protein-coding
232341	chr9	135479651	135479750	+	0	NA	promoter-TSS (NM_014811)	promoter-TSS (NM_014811)	-82	NM_014811	9858		NM_014811	ENSG00000196422	PPP1R26	KIAA0649|NRBE3	protein phosphatase 1 regulatory subunit 26	protein-coding
203542	chr7	879221	879480	+	0	NA	intron (NM_015949, intron 1 of 8)	intron (NM_015949, intron 1 of 8)	2796	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
212277	chr7	123682671	123682950	+	0	NA	3' UTR (NM_003941, exon 11 of 11)	3' UTR (NM_003941, exon 11 of 11)	26944	NM_207163	442721		NM_207163	ENSG00000170807	LMOD2	C-LMOD|CLMOD|CMD2G	leiomodin 2	protein-coding
57200	chr12	121478751	121479450	+	0	NA	intron (NM_001005366, intron 12 of 22)	intron (NM_001005366, intron 12 of 22)	-34748	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
25892	chr10	11269951	11270850	+	0	NA	intron (NM_001326330, intron 6 of 12)	intron (NM_001326330, intron 6 of 12)	74274	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
166495	chr3	114308421	114309830	+	0	NA	3' UTR (NM_173799, exon 4 of 4)	3' UTR (NM_173799, exon 4 of 4)	7444	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
28906	chr10	63132721	63134530	+	0	NA	intron (NM_001282405, intron 1 of 2)	intron (NM_001282405, intron 1 of 2)	297	NM_030759	29982		NM_030759	ENSG00000148572	NRBF2	COPR|COPR1|COPR2|NRBF-2	nuclear receptor binding factor 2	protein-coding
121194	chr19	46530751	46531050	+	0	NA	intron (NM_001370550, intron 1 of 2)	MLT1K|LTR|ERVL-MaLR	-35033	NM_020709	57469		NM_020709	ENSG00000204851	PNMA8B	PNMAL2	PNMA family member 8B	protein-coding
119602	chr19	40754071	40754230	+	0	NA	intron (NM_004596, intron 1 of 5)	AluSg7|SINE|Alu	2947	NM_004596	6626		NM_004596	ENSG00000077312	SNRPA	Mud1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding
214240	chr7	148876771	148876930	+	0	NA	intron (NM_001203248, intron 1 of 19)	MER58C|DNA|hAT-Charlie	6635	NM_001203249	2146		NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
150559	chr21	43095171	43095550	+	0	NA	intron (NM_001025204, intron 6 of 8).2	CpG	12210	NM_006758	7307		NM_006758	ENSG00000160201	U2AF1	FP793|RN|RNU2AF1|U2AF35|U2AFBP	U2 small nuclear RNA auxiliary factor 1	protein-coding
97294	chr17	43176951	43177150	+	0	NA	intron (NM_001291572, intron 2 of 17)	AluJb|SINE|Alu	5836	NM_001291572	4077		NM_005899	ENSG00000188554	NBR1	1A1-3B|IAI3B|M17S2|MIG19	NBR1 autophagy cargo receptor	protein-coding
23761	chr1	232909971	232910130	+	0	NA	Intergenic	L2|LINE|L2	-40561	NR_138025	84284		NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase|THEP1	nucleoside-triphosphatase, cancer-related	protein-coding
225886	chr9	39676421	39676680	+	0	NA	Intergenic	AluY|SINE|Alu	133609	NR_015363	389741		NM_203448	ENSG00000278175	GLIDR	FAM88A|LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA
65823	chr14	54886771	54886930	+	0	NA	intron (NM_001024024, intron 1 of 6)	intron (NM_001024024, intron 1 of 6)	-8657	NR_036194	100422984		NR_036194	ENSG00000265432	MIR4308	-	microRNA 4308	ncRNA
483	chr1	1165151	1165680	+	0	NA	Intergenic	Intergenic	-1689	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA
65992	chr14	58166401	58167000	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-14487	NM_001001872	145407		NM_001001872	ENSG00000139971	ARMH4	C14orf37|UT2|c14_5376	armadillo like helical domain containing 4	protein-coding
68806	chr14	91248971	91249230	+	0	NA	intron (NM_001348437, intron 1 of 2)	intron (NM_001348437, intron 1 of 2)	-4396	NM_001177676	8111		NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
90727	chr17	1998001	1998880	+	0	NA	intron (NM_178568, intron 1 of 1)	CpG	-19276	NR_135642	105371485		NR_135642	ENSG00000228133	LOC105371485	-	uncharacterized LOC105371485	ncRNA
123620	chr19	54541871	54542030	+	0	NA	intron (NR_136268, intron 6 of 8).4	MIRb|SINE|MIR	9258	NR_026716	90011		NM_033206	ENSG00000290933	KIR3DX1	KIR3DL0|LENG12	killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)	pseudo
182755	chr5	68286311	68287030	+	0	NA	intron (NM_181523, intron 7 of 15)	intron (NM_181523, intron 7 of 15)	-1849	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
119952	chr19	41877661	41878380	+	0	NA	intron (NM_021601, intron 1 of 4)	(CTTCCTC)n|Simple_repeat|Simple_repeat	741	NM_001783	973		NM_001783	ENSG00000105369	CD79A	IGA|IGAlpha|MB-1|MB1	CD79a molecule	protein-coding
188424	chr5	154219071	154219230	+	0	NA	intron (NM_198321, intron 1 of 11)	intron (NM_198321, intron 1 of 11)	28417	NM_198321	55568		NM_017540	ENSG00000164574	GALNT10	GALNACT10|PPGALNACT10|PPGANTASE10	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding
46310	chr11	124961951	124962370	+	0	NA	intron (NM_025004, intron 4 of 15)	intron (NM_025004, intron 4 of 15)	7958	NM_025004	80071		NM_025004	ENSG00000149548	CCDC15	-	coiled-coil domain containing 15	protein-coding
187632	chr5	142997651	142999000	+	0	NA	intron (NR_146198, intron 11 of 22)	intron (NR_146198, intron 11 of 22)	-129415	NR_046680	100874239		NR_046680	ENSG00000226272	ARHGAP26-AS1	-	ARHGAP26 antisense RNA 1	ncRNA
223126	chr8	143476021	143476480	+	0	NA	intron (NM_015117, intron 4 of 11)	intron (NM_015117, intron 4 of 11)	29998	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
10941	chr1	84156251	84157450	+	0	NA	intron (NM_182948, intron 1 of 9)	MER102b|DNA|hAT-Charlie	-7334	NM_001242857	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
58267	chr12	128823321	128824750	+	0	NA	promoter-TSS (NM_145648)	promoter-TSS (NM_145648)	-77	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
103088	chr17	77328951	77329050	+	0	NA	intron (NM_006640, intron 1 of 10)	L2a|LINE|L2	9485	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
237725	chrX	125614221	125614500	+	0	NA	Intergenic	L1PA3|LINE|L1	294489	NM_001195272	100129520		NM_001195272	ENSG00000282815	TEX13C	-	TEX13 family member C	protein-coding
136980	chr2	190469051	190469350	+	0	NA	promoter-TSS (NM_001375993)	promoter-TSS (NM_001375993)	-293	NM_001375994	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
38625	chr11	46344551	46345600	+	0	NA	promoter-TSS (NM_201533)	promoter-TSS (NM_201533)	-192	NM_201533	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
52669	chr12	56340801	56341780	+	0	NA	TTS (NM_005419)	TTS (NM_005419)	2406	NM_016584	51561		NM_016584	ENSG00000110944	IL23A	IL-23|IL-23A|IL23P19|P19|SGRF	interleukin 23 subunit alpha	protein-coding
64236	chr14	23093271	23093430	+	0	NA	intron (NM_014977, intron 2 of 18)	intron (NM_014977, intron 2 of 18)	-2155	NM_017924	55017		NM_017924	ENSG00000179933	C14orf119	-	chromosome 14 open reading frame 119	protein-coding
206332	chr7	30316071	30316680	+	0	NA	intron (NM_147128, intron 1 of 4)	intron (NM_147128, intron 1 of 4)	-26485	NR_037513	100500883		NR_037513	ENSG00000283237	MIR550B1	-	microRNA 550b-1	ncRNA
159877	chr3	16841801	16843730	+	0	NA	Intergenic	Intergenic	-42190	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
112938	chr19	7697801	7698200	+	0	NA	intron (NM_002002, intron 4 of 10)	Tigger5b|DNA|TcMar-Tigger	1479	NM_001207019	2208		NM_002002	ENSG00000104921	FCER2	BLAST-2|CD23|CD23A|CLEC4J|FCE2|FCErII|IGEBF	Fc epsilon receptor II	protein-coding
50244	chr12	46245171	46245630	+	0	NA	intron (NM_001077484, intron 1 of 16)	L1MA9|LINE|L1	21116	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
11283	chr1	89197001	89197350	+	0	NA	exon (NM_052941, exon 2 of 11)	exon (NM_052941, exon 2 of 11)	1767	NM_052941	115361		NM_052941	ENSG00000162654	GBP4	Mpa2	guanylate binding protein 4	protein-coding
35252	chr11	855501	855700	+	0	NA	intron (NM_001025235, intron 3 of 8)	intron (NM_001025235, intron 3 of 8)	11154	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
5208	chr1	24971451	24972380	+	0	NA	Intergenic	Intergenic	-6905	NM_001031680	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
95351	chr17	35816501	35816980	+	0	NA	intron (NM_139215, intron 1 of 15).2	intron (NM_139215, intron 1 of 15).2	7256	NM_003487	8148		NM_003487	ENSG00000270647	TAF15	Npl3|RBP56|TAF2N|TAFII68	TATA-box binding protein associated factor 15	protein-coding
91359	chr17	4533421	4535000	+	0	NA	intron (NM_001124758, intron 9 of 12)	intron (NM_001124758, intron 9 of 12)	21174	NM_014520	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
226260	chr9	67725831	67726940	+	0	NA	intron (NR_027422, intron 1 of 1)	SST1|Satellite|centr	358	NR_027422	100133121		NR_027422		FAM27B	FAM27A2	family with sequence similarity 27 member B	ncRNA
18595	chr1	165597521	165598750	+	0	NA	Intergenic	CpG	-15980	NR_026744	400794		NR_026744	ENSG00000237463	LRRC52-AS1	-	LRRC52 antisense RNA 1	ncRNA
211641	chr7	106153551	106154160	+	0	NA	Intergenic	Intergenic	-41279	NM_001381918	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
65781	chr14	54490251	54490350	+	0	NA	Intergenic	LTR35A|LTR|ERV1	-1320	NM_004124	2764		NM_004124	ENSG00000197045	GMFB	GMF	glia maturation factor beta	protein-coding
227975	chr9	95189451	95189750	+	0	NA	intron (NM_001243743, intron 4 of 14)	intron (NM_001243743, intron 4 of 14)	-103506	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA
185858	chr5	132499221	132500030	+	0	NA	Intergenic	Intergenic	-8852	NM_001354925	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
61789	chr13	75321901	75322100	+	0	NA	intron (NM_014832, intron 11 of 20)	L1ME3A|LINE|L1	81412	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
102876	chr17	76513201	76513480	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-11913	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
180931	chr5	34695521	34695980	+	0	NA	intron (NM_001145525, intron 4 of 19)	MER33|DNA|hAT-Charlie	8191	NM_001145523	26064		NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding
107428	chr18	46204501	46205130	+	0	NA	intron (NM_145055, intron 1 of 4)	intron (NM_145055, intron 1 of 4)	30781	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
11076	chr1	85230551	85230900	+	0	NA	Intergenic	LTR16|LTR|ERVL	28937	NR_024113	148423		NM_198077	ENSG00000162642	C1orf52	gm117	chromosome 1 open reading frame 52	protein-coding
229339	chr9	120911071	120911500	+	0	NA	intron (NM_005658, intron 6 of 7)	intron (NM_005658, intron 6 of 7)	3287	NM_001190947	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
168294	chr3	141518301	141519100	+	0	NA	intron (NM_006506, intron 3 of 23)	intron (NM_006506, intron 3 of 23)	31673	NM_006506	5922		NM_006506	ENSG00000155903	RASA2	GAP1M	RAS p21 protein activator 2	protein-coding
10778	chr1	77379121	77379380	+	0	NA	intron (NM_174858, intron 6 of 13)	intron (NM_174858, intron 6 of 13)	96163	NM_012093	26289		NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding
14041	chr1	120749171	120749330	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	25311	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
28337	chr10	46597721	46598530	+	0	NA	promoter-TSS (NR_155739)	promoter-TSS (NR_155739)	20	NR_155739	101927699		NR_155739		SYT15-AS1	-	SYT15 antisense RNA 1	ncRNA
35434	chr11	1439521	1439780	+	0	NA	intron (NM_001256630, intron 3 of 19)	intron (NM_001256630, intron 3 of 19)	28498	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
18560	chr1	162627771	162627930	+	0	NA	Intergenic	MIRc|SINE|MIR	-3013	NM_001354983	4921		NM_006182	ENSG00000162733	DDR2	MIG20a|NTRKR3|TKT|TYRO10|WRCN	discoidin domain receptor tyrosine kinase 2	protein-coding
219059	chr8	65800451	65801350	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	-11843	NM_002603	5150		NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding
221944	chr8	129913971	129914130	+	0	NA	intron (NM_001353279, intron 2 of 13)	Tigger6a|DNA|TcMar-Tigger	25761	NM_001353268	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
7038	chr1	31933601	31934030	+	0	NA	intron (NM_001369859, intron 1 of 6)	MIRb|SINE|MIR	4003	NM_001369858	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
932	chr1	1721151	1721450	+	0	NA	intron (NR_132739, intron 3 of 19)	intron (NR_132739, intron 3 of 19)	3057	NR_132739	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
59011	chr13	20163271	20163850	+	0	NA	Intergenic	Intergenic	-2508	NM_021954	2700		NM_021954	ENSG00000121743	GJA3	CTRCT14|CX46|CZP3	gap junction protein alpha 3	protein-coding
235476	chrX	46637971	46638130	+	0	NA	intron (NM_001257291, intron 12 of 16)	intron (NM_001257291, intron 12 of 16)	64285	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
176366	chr4	88527271	88527650	+	0	NA	intron (NM_001375482, intron 1 of 24)	AluJr|SINE|Alu	3617	NM_001375483	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
175834	chr4	78348171	78348630	+	0	NA	intron (NM_025074, intron 20 of 73)	L1HS|LINE|L1	59415	NR_145782	109623453		NR_145782		SNORD161	-	small nucleolar RNA, C/D box 161	snoRNA
22067	chr1	211332951	211333430	+	0	NA	intron (NM_001319207, intron 1 of 10)	AluSx1|SINE|Alu	6357	NM_001033910	7188		NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding
79148	chr16	265401	265800	+	0	NA	3' UTR (NM_032039, exon 13 of 13)	3' UTR (NM_032039, exon 13 of 13)	10344	NM_183337	8786		NM_003834	ENSG00000076344	RGS11	RS11	regulator of G protein signaling 11	protein-coding
113334	chr19	8609221	8609860	+	0	NA	intron (NM_030957, intron 1 of 25)	CpG	1175	NM_030957	81794		NM_030957	ENSG00000142303	ADAMTS10	ADAM-TS10|ADAMTS-10|WMS|WMS1	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein-coding
7437	chr1	32980821	32982050	+	0	NA	Intergenic	Intergenic	-16626	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
168860	chr3	152283101	152283950	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-13899	NR_027038	401093		NR_027037	ENSG00000229619	MBNL1-AS1	-	MBNL1 antisense RNA 1	ncRNA
147988	chr20	63009901	63011030	+	0	NA	intron (NR_033370, intron 1 of 4)	L1MB3|LINE|L1	1082	NR_033370	63930		NR_033370	ENSG00000272259	LINC01749	-	long intergenic non-protein coding RNA 1749	ncRNA
67368	chr14	69731401	69731600	+	0	NA	Intergenic	Intergenic	-35642	NM_006925	6430		NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
15463	chr1	150350821	150351080	+	0	NA	intron (NR_146768, intron 15 of 15)	AluJb|SINE|Alu	-13161	NM_001297674	23248		NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding
113001	chr19	7902921	7905050	+	0	NA	exon (NM_001297555, exon 1 of 12)	exon (NM_001297555, exon 1 of 12)	108	NM_145185	5609		NM_145185	ENSG00000076984	MAP2K7	JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4	mitogen-activated protein kinase kinase 7	protein-coding
203500	chr7	608671	608930	+	0	NA	TTS (NR_110054)	TTS (NR_110054)	5402	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
53412	chr12	64756251	64756800	+	0	NA	intron (NM_002076, intron 1 of 13)	MIRb|SINE|MIR	2881	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
123054	chr19	51337371	51337730	+	0	NA	intron (NM_001163922, intron 6 of 9)	MSR1|Satellite|Satellite	4574	NM_001163922	147645		NM_001163922	ENSG00000186806	VSIG10L	-	V-set and immunoglobulin domain containing 10 like	protein-coding
14788	chr1	146110451	146110550	+	0	NA	intron (NM_001302371, intron 34 of 89)	intron (NM_001302371, intron 34 of 89)	34304	NM_001302371	100132406		NM_001039703	ENSG00000271425	NBPF10	AB6|AG1|NBPF9	NBPF member 10	protein-coding
216529	chr8	20878901	20879130	+	0	NA	Intergenic	MIR3|SINE|MIR	-74618	NR_130774	102467222		NR_130773	ENSG00000253147	LINC03023	-	long intergenic non-protein coding RNA 3023	ncRNA
185862	chr5	132526421	132527480	+	0	NA	Intergenic	LTR85a|LTR|Gypsy?	16572	NM_000879	3567		NM_000879	ENSG00000113525	IL5	EDF|IL-5|TRF	interleukin 5	protein-coding
95714	chr17	38560771	38561280	+	0	NA	intron (NM_025248, intron 7 of 18)	intron (NM_025248, intron 7 of 18)	44927	NM_025248	80725		NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding
142776	chr20	12925271	12925430	+	0	NA	intron (NR_109868, intron 4 of 11)	intron (NR_109868, intron 4 of 11)	11613	NR_109872	102606466		NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
79841	chr16	1445751	1446400	+	0	NA	3' UTR (NM_001287, exon 25 of 25)	3' UTR (NM_001287, exon 25 of 25)	-1586	NM_001143980	645811		NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding
177763	chr4	122688821	122689330	+	0	NA	TTS (NR_104126)	TTS (NR_104126)	43383	NR_024041	729338		NR_024041		CETN4P	-	centrin 4, pseudogene	pseudo
135743	chr2	169558971	169559430	+	0	NA	intron (NM_001322048, intron 4 of 13)	AluSp|SINE|Alu	14665	NM_024622	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
226894	chr9	78295001	78295200	+	0	NA	Intergenic	Intergenic	-2025	NM_021154	29968		NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding
65048	chr14	39230571	39230930	+	0	NA	Intergenic	Intergenic	-3165	NM_001329214	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
64933	chr14	35802251	35803050	+	0	NA	intron (NM_014990, intron 1 of 40)	L1ME1|LINE|L1	6645	NM_001346243	253959		NM_014990	ENSG00000174373	RALGAPA1	GARNL1|GRIPE|NEDHRIT|RalGAPalpha1|TULIP1|p240	Ral GTPase activating protein catalytic subunit alpha 1	protein-coding
127803	chr2	44359901	44360100	+	0	NA	promoter-TSS (NM_001042386)	promoter-TSS (NM_001042386)	-251	NM_001042386	9581		NM_006036	ENSG00000138078	PREPL	CMS22	prolyl endopeptidase like	protein-coding
176487	chr4	89929151	89930050	+	0	NA	intron (NM_001371403, intron 6 of 8)	intron (NM_001371403, intron 6 of 8)	34746	NM_007351	22915		NM_007351	ENSG00000138722	MMRN1	ECM|EMILIN4|GPIa*|MMRN	multimerin 1	protein-coding
95675	chr17	38333551	38334030	+	0	NA	intron (NM_001004334, intron 9 of 10)	intron (NM_001004334, intron 9 of 10)	10166	NM_001004334	440435		NM_001004334	ENSG00000277399	GPR179	CSNB1E|GPR158L|GPR158L1	G protein-coupled receptor 179	protein-coding
165138	chr3	71778021	71778680	+	0	NA	intron (NM_001126128, intron 2 of 3)	intron (NM_001126128, intron 2 of 3)	6798	NM_001126128	60675		NM_021935	ENSG00000163421	PROK2	BV8|HH4|KAL4|MIT1|PK2	prokineticin 2	protein-coding
230915	chr9	129292871	129293030	+	0	NA	Intergenic	AluSx|SINE|Alu	10534	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
113280	chr19	8531201	8531400	+	0	NA	intron (NM_012335, intron 19 of 27)	AluSp|SINE|Alu	-17133	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
208426	chr7	66766901	66767100	+	0	NA	intron (NM_001367731, intron 3 of 10)	AluSx1|SINE|Alu	11118	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
77686	chr15	85629451	85630250	+	0	NA	intron (NM_001270546, intron 1 of 28)	AluJb|SINE|Alu	9900	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
119968	chr19	41895151	41895250	+	0	NA	intron (NM_004706, intron 11 of 28)	MSR1|Satellite|Satellite	10757	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
11986	chr1	94801971	94802380	+	0	NA	intron (NR_160783, intron 1 of 3)	intron (NR_160783, intron 1 of 3)	18057	NR_104131	101928079		NR_104131	ENSG00000293271	SLC44A3-AS1	LINC01057|XLOC_000303	SLC44A3 antisense RNA 1	ncRNA
72670	chr15	38540071	38540550	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	24504	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
180320	chr5	6292151	6292250	+	0	NA	Intergenic	MLT2D|LTR|ERVL	45092	NR_028351	401172		NM_001001702	ENSG00000250490	LINC02145	-	long intergenic non-protein coding RNA 2145	ncRNA
193906	chr6	31627751	31627850	+	0	NA	exon (NM_080686, exon 12 of 31).2	exon (NM_080686, exon 12 of 31).2	4721	NR_002971	677820		NR_002971	ENSG00000200816	SNORA38	ACA38	small nucleolar RNA, H/ACA box 38	snoRNA
80693	chr16	3052651	3053780	+	0	NA	non-coding (NR_123723, exon 5 of 5)	non-coding (NR_123723, exon 5 of 5)	6155	NR_123723	100507419		NR_123723		MMP25-AS1	-	MMP25 antisense RNA 1	ncRNA
27824	chr10	38039351	38039450	+	0	NA	intron (NM_001278179, intron 5 of 5)	AluJb|SINE|Alu	28725	NM_001324177	7581		NM_006954	ENSG00000189180	ZNF33A	KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK	zinc finger protein 33A	protein-coding
124105	chr19	55654601	55656100	+	0	NA	intron (NM_007279, intron 1 of 11)	CpG-15209	315	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
39920	chr11	62525071	62525830	+	0	NA	exon (NM_001346446, exon 5 of 5)	exon (NM_001346446, exon 5 of 5)	20214	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
160165	chr3	22538551	22538650	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	581461	NR_046876	100874221		NR_046876	ENSG00000223351	ZNF385D-AS2	-	ZNF385D antisense RNA 2	ncRNA
67677	chr14	73135721	73137380	+	0	NA	promoter-TSS (NM_000021)	promoter-TSS (NM_000021)	43	NM_007318	5663		NM_000021	ENSG00000080815	PSEN1	ACNINV3|AD3|FAD|PS-1|PS1|PSNL1|S182	presenilin 1	protein-coding
224737	chr9	21778421	21778780	+	0	NA	Intergenic	Intergenic	-24036	NM_002451	4507		NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding
59508	chr13	26947001	26947230	+	0	NA	Intergenic	Intergenic	-178418	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
60033	chr13	32639451	32639780	+	0	NA	intron (NM_015032, intron 1 of 34)	intron (NM_015032, intron 1 of 34)	53163	NM_015032	23047		NM_015032	ENSG00000083642	PDS5B	APRIN|AS3|CG008	PDS5 cohesin associated factor B	protein-coding
2828	chr1	11054751	11055250	+	0	NA	exon (NM_003132, exon 7 of 8)	exon (NM_003132, exon 7 of 8)	5018	NM_003132	6723		NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding
233493	chr9	138128151	138128480	+	0	NA	Intergenic	Intergenic	-21798	NR_027156	643224		NR_027156		TUBBP5	-	tubulin beta pseudogene 5	pseudo
70237	chr14	101077651	101077950	+	0	NA	Intergenic	Intergenic	7889	NR_047664	100507257		NR_047664	ENSG00000223403	MEG9	LINC00584	maternally expressed 9	ncRNA
66331	chr14	61430001	61430680	+	0	NA	intron (NM_006255, intron 2 of 13)	L1P3|LINE|L1	108897	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
223257	chr8	143685501	143685700	+	0	NA	intron (NM_001288808, intron 1 of 3).2	AluJr|SINE|Alu	1121	NM_001100598	286075		NM_173831	ENSG00000181135	ZNF707	-	zinc finger protein 707	protein-coding
135644	chr2	168248901	168249100	+	0	NA	Intergenic	Intergenic	-1405	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
177664	chr4	121473001	121473200	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-92082	NM_198179	84109		NM_198179	ENSG00000186867	QRFPR	AQ27|GPR103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
5297	chr1	25195571	25195930	+	0	NA	Intergenic	Intergenic	36752	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
222369	chr8	133578351	133578750	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-6663	NM_173344	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
193656	chr6	30905251	30905550	+	0	NA	Intergenic	AluJb|SINE|Alu	-2807	NM_001517	2968		NM_001517	ENSG00000213780	GTF2H4	P52|TFB2|TFIIH	general transcription factor IIH subunit 4	protein-coding
204048	chr7	1947901	1948100	+	0	NA	intron (NM_001304524, intron 14 of 16)	intron (NM_001304524, intron 14 of 16)	-7429	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
14123	chr1	120941511	120943550	+	0	NA	promoter-TSS (NR_125392)	promoter-TSS (NR_125392)	-70	NR_125392	101954268		NR_125392		RNVU1-20	RNU1-110|vU1.20	RNA, variant U1 small nuclear 20	snRNA
191867	chr6	15286071	15286300	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	37330	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
150777	chr21	43813621	43814280	+	0	NA	Intergenic	AluSg|SINE|Alu	-1383	NR_026961	284837		NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA
57889	chr12	123435761	123437730	+	0	NA	promoter-TSS (NR_130703)	promoter-TSS (NR_130703)	-12	NM_145058	196383		NM_145058	ENSG00000150977	RILPL2	RLP2	Rab interacting lysosomal protein like 2	protein-coding
33184	chr10	113108351	113108650	+	0	NA	intron (NM_001146283, intron 5 of 12)	intron (NM_001146283, intron 5 of 12)	-18133	NM_001349871	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
232919	chr9	136878671	136879150	+	0	NA	Intergenic	AluSz|SINE|Alu	-7606	NM_021138	7186		NM_021138	ENSG00000127191	TRAF2	MGC:45012|RNF117|TRAP|TRAP3	TNF receptor associated factor 2	protein-coding
102917	chr17	76570171	76570330	+	0	NA	intron (NM_006456, intron 6 of 8)	intron (NM_006456, intron 6 of 8)	8617	NR_004395	677848		NR_004395	ENSG00000278261	SNORD1A	R38A|snR38A	small nucleolar RNA, C/D box 1A	snoRNA
147549	chr20	59939821	59941040	+	0	NA	promoter-TSS (NM_022106)	promoter-TSS (NM_022106)	41	NM_001190827	63939		NM_022106	ENSG00000196227	FAM217B	C20orf177|dJ551D2.5	family with sequence similarity 217 member B	protein-coding
180577	chr5	14809481	14810500	+	0	NA	intron (NM_054027, intron 1 of 11)	intron (NM_054027, intron 1 of 11)	16022	NR_039780	100616271		NR_039780	ENSG00000264792	MIR4637	-	microRNA 4637	ncRNA
92488	chr17	8868521	8868890	+	0	NA	Intergenic	Intergenic	-1028	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
56523	chr12	116611201	116611430	+	0	NA	Intergenic	MIR3|SINE|MIR	51934	NM_001085481	643246		NM_001085481	ENSG00000258102	MAP1LC3B2	ATG8G	microtubule associated protein 1 light chain 3 beta 2	protein-coding
161706	chr3	43655721	43656030	+	0	NA	intron (NM_001346468, intron 1 of 12)	LTR12C|LTR|ERV1	-33798	NM_001346463	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
119996	chr19	41920601	41921400	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	7449	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
159916	chr3	16942751	16943430	+	0	NA	intron (NM_015184, intron 1 of 5)	intron (NM_015184, intron 1 of 5)	9894	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
207112	chr7	41882771	41882970	+	0	NA	Intergenic	Intergenic	-179780	NM_002192	3624		NM_002192	ENSG00000122641	INHBA	EDF|FRP	inhibin subunit beta A	protein-coding
35321	chr11	1034671	1034830	+	0	NA	intron (NM_005961, intron 1 of 32)	intron (NM_005961, intron 1 of 32)	1968	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
16864	chr1	155750021	155750280	+	0	NA	non-coding (NR_024117, exon 13 of 13).2	non-coding (NR_024117, exon 13 of 13).2	4382	NR_024117	100129405		NR_024117		MSTO2P	MSTO2	misato family member 2, pseudogene	pseudo
31329	chr10	92848201	92849580	+	0	NA	intron (NM_001319200, intron 1 of 17)	CpG	370	NM_001319195	54536		NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
162169	chr3	46985821	46986430	+	0	NA	intron (NM_015175, intron 1 of 53)	intron (NM_015175, intron 1 of 53)	-1865	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
222063	chr8	130316921	130317250	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-20552	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
95222	chr17	35255401	35255600	+	0	NA	intron (NM_144975, intron 1 of 4)	intron (NM_144975, intron 1 of 4)	12428	NM_001330183	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
174139	chr4	36230471	36231380	+	0	NA	intron (NR_146894, intron 1 of 32)	intron (NR_146894, intron 1 of 32)	13014	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
134228	chr2	134781101	134781300	+	0	NA	Intergenic	Intergenic	-57416	NM_001307983	130013		NM_138326	ENSG00000153086	ACMSD	-	aminocarboxymuconate semialdehyde decarboxylase	protein-coding
104582	chr17	81388601	81389530	+	0	NA	Intergenic	Intergenic	-3683	NR_164137	100130370		NR_164137	ENSG00000262223	LINC03048	-	long intergenic non-protein coding RNA 3048	ncRNA
220365	chr8	99859821	99860480	+	0	NA	intron (NM_152564, intron 57 of 61)	intron (NM_152564, intron 57 of 61)	33557	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
67924	chr14	74651121	74651380	+	0	NA	Intergenic	AluJo|SINE|Alu	-39013	NM_000428	4053		NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding
72521	chr15	34109951	34110300	+	0	NA	Intergenic	Intergenic	8042	NM_152595	161779		NM_152595	ENSG00000182405	PGBD4	-	piggyBac transposable element derived 4	protein-coding
116544	chr19	18209601	18210150	+	0	NA	3' UTR (NM_001369701, exon 14 of 14)	3' UTR (NM_001369701, exon 14 of 14)	5145	NR_134910	102725254		NR_134910	ENSG00000268650	LOC102725254	-	uncharacterized LOC102725254	ncRNA
76382	chr15	74614121	74615100	+	0	NA	intron (NM_003992, intron 1 of 12)	CpG	-1226	NM_001130028	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
131557	chr2	96772171	96773230	+	0	NA	intron (NM_020184, intron 1 of 6)	(CA)n|Simple_repeat|Simple_repeat	11798	NM_020184	26504		NM_020184	ENSG00000158158	CNNM4	ACDP4	cyclin and CBS domain divalent metal cation transport mediator 4	protein-coding
198635	chr6	107791201	107791600	+	0	NA	intron (NM_198081, intron 1 of 7)	L3|LINE|CR1	32913	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
191438	chr6	10586951	10587130	+	0	NA	intron (NM_145655, intron 1 of 2)	intron (NM_145655, intron 1 of 2)	1280	NM_145655	2651		NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein-coding
201559	chr6	149273171	149273530	+	0	NA	intron (NM_001292035, intron 2 of 6)	LTR78B|LTR|ERV1	-15799	NR_149096	105378049		NR_149096	ENSG00000225924	TAB2-AS1	-	TAB2 antisense RNA 1	ncRNA
24833	chr10	351621	352800	+	0	NA	intron (NM_014974, intron 24 of 36)	intron (NM_014974, intron 24 of 36)	172216	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
30757	chr10	84264601	84265030	+	0	NA	Intergenic	Intergenic	-15165	NR_038220	170425		NR_038220	ENSG00000229404	LINC00858	CRCAL-2|LNMAT2	long intergenic non-protein coding RNA 858	ncRNA
105627	chr18	808051	808800	+	0	NA	intron (NM_005433, intron 1 of 11)	intron (NM_005433, intron 1 of 11)	3817	NM_005433	7525		NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding
74793	chr15	63381321	63382050	+	0	NA	non-coding (NR_135511, exon 1 of 10)	non-coding (NR_135511, exon 1 of 10)	161	NR_135511	771		NM_001218	ENSG00000074410	CA12	CA-XII|CAXII|HsT18816|T18816	carbonic anhydrase 12	protein-coding
160504	chr3	30630021	30630300	+	0	NA	intron (NM_001024847, intron 2 of 7)	intron (NM_001024847, intron 2 of 7)	23559	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
235629	chrX	48433801	48434100	+	0	NA	Intergenic	L1PA5|LINE|L1	-22040	NM_001040612	548313		NM_001034832	ENSG00000269791	SSX4B	CT5.4	SSX family member 4B	protein-coding
213310	chr7	135164101	135164300	+	0	NA	intron (NM_018295, intron 1 of 1)	intron (NM_018295, intron 1 of 1)	5274	NM_001243755	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
157826	chr22	47208001	47208200	+	0	NA	Intergenic	Intergenic	-137471	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
132012	chr2	100640421	100640680	+	0	NA	Intergenic	Intergenic	36811	NR_146956	105373507		NR_146956	ENSG00000234988	LINC01849	-	long intergenic non-protein coding RNA 1849	ncRNA
199091	chr6	111665921	111666180	+	0	NA	intron (NM_001370529, intron 11 of 11)	AluSz6|SINE|Alu	-59776	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
98655	chr17	47828471	47828730	+	0	NA	exon (NM_148887, exon 3 of 6)	exon (NM_148887, exon 3 of 6)	2941	NR_037575	124995		NM_145255	ENSG00000159111	MRPL10	L10MT|MRP-L10|MRP-L8|MRPL8|RPML8|uL10m	mitochondrial ribosomal protein L10	protein-coding
189859	chr5	177136301	177136800	+	0	NA	intron (NM_172349, intron 3 of 23)	intron (NM_172349, intron 3 of 23)	2321	NM_001365684	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
225338	chr9	34635201	34635600	+	0	NA	non-coding (NR_104108, exon 4 of 4)	non-coding (NR_104108, exon 4 of 4)	2387	NM_001282205	10280		NM_005866	ENSG00000147955	SIGMAR1	ALS16|DSMA2|HMNR2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding
25226	chr10	5862421	5862680	+	0	NA	3' UTR (NM_019046, exon 8 of 8)	3' UTR (NM_019046, exon 8 of 8)	-27022	NM_001258452	84893		NM_032807	ENSG00000134452	FBH1	FBXO18|Fbx18|hFBH1	F-box DNA helicase 1	protein-coding
214202	chr7	148633201	148633400	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	42534	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
119640	chr19	40806391	40807210	+	0	NA	intron (NM_053046, intron 3 of 5)	intron (NM_053046, intron 3 of 5)	4300	NR_144551	171523		NR_144551	ENSG00000293405	CYP2T1P	CYP2T2P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudo
167067	chr3	126987621	126988500	+	0	NA	promoter-TSS (NM_032242)	promoter-TSS (NM_032242)	-534	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
152478	chr22	20784171	20784850	+	0	NA	intron (NM_000185, intron 3 of 4)	intron (NM_000185, intron 3 of 4)	10397	NM_000185	3053		NM_000185	ENSG00000099937	SERPIND1	D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10	serpin family D member 1	protein-coding
124564	chr2	584871	585530	+	0	NA	Intergenic	Intergenic	26999	NR_136169	105373352		NR_136168	ENSG00000233633	LOC105373352	-	uncharacterized LOC105373352	ncRNA
219146	chr8	66407671	66407830	+	0	NA	Intergenic	Intergenic	21227	NR_040434	100505676		NM_001242759	ENSG00000246145	RRS1-DT	RRS1-AS1	RRS1 divergent transcript	ncRNA
28203	chr10	44965401	44965800	+	0	NA	intron (NM_032023, intron 1 of 10)	intron (NM_032023, intron 1 of 10)	5798	NM_032023	83937		NM_032023	ENSG00000107551	RASSF4	AD037	Ras association domain family member 4	protein-coding
17134	chr1	156178021	156179150	+	0	NA	TTS (NM_001193300)	TTS (NM_001193300)	-15519	NR_104408	9673		NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding
93447	chr17	18677321	18677700	+	0	NA	intron (NM_001368134, intron 3 of 3)	CpG	4804	NM_001368135	2310		NM_001368134	ENSG00000240445	FOXO3B	FKHRL1P1|ZNF286C	forkhead box O3B	protein-coding
76518	chr15	75028471	75028630	+	0	NA	intron (NM_001301103, intron 2 of 3)	intron (NM_001301103, intron 2 of 3)	4960	NM_001301103	60490		NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
215058	chr7	152757751	152758330	+	0	NA	Intergenic	Intergenic	-1709	NM_001350946	57180		NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	actin related protein 3B	protein-coding
107960	chr18	58316971	58317330	+	0	NA	intron (NM_001243960, intron 6 of 28)	intron (NM_001243960, intron 6 of 28)	95579	NM_001144966	23327		NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	NEDD4 like E3 ubiquitin protein ligase	protein-coding
110980	chr19	2978601	2979030	+	0	NA	intron (NM_001143986, intron 2 of 16)	intron (NM_001143986, intron 2 of 16)	1251	NR_138612	79816		NM_024760	ENSG00000104953	TLE6	GRG6|OZEMA15|PREMBL	TLE family member 6, subcortical maternal complex member	protein-coding
146057	chr20	47415021	47415900	+	0	NA	Intergenic	L2|LINE|L2	-3316	NR_146496	102723442		NR_146494		LINC01754	-	long intergenic non-protein coding RNA 1754	ncRNA
106275	chr18	12596971	12597550	+	0	NA	intron (NM_001128626, intron 2 of 16)	intron (NM_001128626, intron 2 of 16)	59472	NM_001128627	56907		NM_020148	ENSG00000134278	SPIRE1	Spir-1	spire type actin nucleation factor 1	protein-coding
90907	chr17	2509601	2509800	+	0	NA	intron (NM_024086, intron 1 of 9)	AluSx|SINE|Alu	2188	NM_024086	79066		NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase 16, RNA N6-adenosine	protein-coding
86621	chr16	67397321	67397580	+	0	NA	intron (NM_013304, intron 8 of 10)	intron (NM_013304, intron 8 of 10)	-3952	NM_016140	51673		NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding
42057	chr11	67468721	67470080	+	0	NA	promoter-TSS (NM_001078651)	promoter-TSS (NM_001078651)	-149	NM_001078650	80194		NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding
233215	chr9	137230671	137230830	+	0	NA	promoter-TSS (NM_001177317)	promoter-TSS (NM_001177317)	-7	NM_001177317	142680		NM_080877	ENSG00000198569	SLC34A3	HHRH|NPT2C|NPTIIc	solute carrier family 34 member 3	protein-coding
159662	chr3	15360621	15360880	+	0	NA	Intergenic	L1ME1|LINE|L1	-19370	NM_001018009	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
198552	chr6	106569221	106569680	+	0	NA	3' UTR (NM_001624, exon 20 of 20)	3' UTR (NM_001624, exon 20 of 20)	57595	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
98214	chr17	46140201	46140400	+	0	NA	intron (NM_015443, intron 2 of 14).2	L1M4|LINE|L1	52482	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
190206	chr5	178219971	178220400	+	0	NA	intron (NM_153373, intron 8 of 12)	AluJb|SINE|Alu	12617	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
30277	chr10	75167751	75167930	+	0	NA	intron (NM_144660, intron 3 of 4)	AluJr|SINE|Alu	-42314	NM_001324087	7417		NM_003375	ENSG00000165637	VDAC2	POR	voltage dependent anion channel 2	protein-coding
220607	chr8	100918771	100919530	+	0	NA	3' UTR (NM_001135701, exon 6 of 6)	3' UTR (NM_001135701, exon 6 of 6)	31421	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
6376	chr1	27875201	27876080	+	0	NA	intron (NM_001039477, intron 1 of 3)	intron (NM_001039477, intron 1 of 3)	3096	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
32630	chr10	103679251	103679700	+	0	NA	intron (NM_014631, intron 6 of 13)	intron (NM_014631, intron 6 of 13)	-1260	NM_001365079	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
192087	chr6	16676901	16677530	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	82969	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
68469	chr14	87944971	87945350	+	0	NA	intron (NM_001201401, intron 13 of 15)	intron (NM_001201401, intron 13 of 15)	48022	NM_000153	2581		NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding
220957	chr8	109543021	109543830	+	0	NA	intron (NM_001278938, intron 1 of 6)	intron (NM_001278938, intron 1 of 6)	2799	NM_001278938	9166		NM_004215	ENSG00000147654	EBAG9	EB9|PDAF	estrogen receptor binding site associated antigen 9	protein-coding
51804	chr12	53390521	53390900	+	0	NA	intron (NM_138473, intron 3 of 5)	intron (NM_138473, intron 3 of 5)	10066	NM_003109	6667		NM_003109	ENSG00000185591	SP1	-	Sp1 transcription factor	protein-coding
170131	chr3	183342801	183343200	+	0	NA	intron (NM_015078, intron 3 of 29)	intron (NM_015078, intron 3 of 29)	85269	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
114832	chr19	13824751	13824850	+	0	NA	intron (NM_023072, intron 10 of 12)	intron (NM_023072, intron 10 of 12)	11559	NR_029497	407013		NR_029497	ENSG00000284387	MIR24-2	MIRN24-2|miR-24-2|miRNA24-2	microRNA 24-2	ncRNA
158543	chr3	4251551	4251650	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-51704	NM_001276325	6419		NM_006515	ENSG00000170364	SETMAR	METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
17515	chr1	156750901	156752340	+	0	NA	promoter-TSS (NM_004494)	promoter-TSS (NM_004494)	55	NM_004494	3068		NM_004494	ENSG00000143321	HDGF	HMG1L2	heparin binding growth factor	protein-coding
82618	chr16	18921751	18922000	+	0	NA	intron (NM_015092, intron 1 of 62)	intron (NM_015092, intron 1 of 62)	4533	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
94007	chr17	25242951	25243050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1846241	NR_135673	105371703		NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
31127	chr10	89414051	89415830	+	0	NA	intron (NM_012420, intron 1 of 1)	CpG	372	NM_012420	24138		NM_012420	ENSG00000152778	IFIT5	ISG58|P58|RI58	interferon induced protein with tetratricopeptide repeats 5	protein-coding
2578	chr1	9803651	9803950	+	0	NA	intron (NM_014944, intron 1 of 17)	AluSz|SINE|Alu	20165	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
217259	chr8	27314171	27314580	+	0	NA	intron (NM_173174, intron 3 of 35)	AluJo|SINE|Alu	2897	NM_173174	2185		NM_004103	ENSG00000120899	PTK2B	CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK	protein tyrosine kinase 2 beta	protein-coding
13676	chr1	116572321	116573150	+	0	NA	Intergenic	Intergenic	-1642	NM_001144822	965		NM_001779	ENSG00000116815	CD58	LFA-3|LFA3|ag3	CD58 molecule	protein-coding
206451	chr7	32886051	32886150	+	0	NA	intron (NM_015483, intron 1 of 3)	AluSx|SINE|Alu	5660	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
142749	chr20	10445851	10446250	+	0	NA	intron (NM_001009608, intron 1 of 7)	L1MD2|LINE|L1	10745	NM_001009608	128710		NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding
26287	chr10	14935051	14935330	+	0	NA	intron (NR_146960, intron 6 of 13)	AluSx|SINE|Alu	18906	NR_146961	64421		NM_022487	ENSG00000152457	DCLRE1C	A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C	DNA cross-link repair 1C	protein-coding
15070	chr1	148454871	148455230	+	0	NA	intron (NR_027468, intron 1 of 4)	intron (NR_027468, intron 1 of 4)	4870	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
197189	chr6	63580151	63581200	+	0	NA	non-coding (NR_169593, exon 6 of 6)	non-coding (NR_169593, exon 6 of 6)	8195	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
162010	chr3	46427401	46427800	+	0	NA	Intergenic	HERVK3-int|LTR|ERVK	-3933	NR_151704	105377068		NR_151704	ENSG00000283646	LINC02009	-	long intergenic non-protein coding RNA 2009	ncRNA
43314	chr11	76237471	76237780	+	0	NA	Intergenic	Intergenic	-31123	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
87953	chr16	79602051	79602750	+	0	NA	Intergenic	Intergenic	-1663	NM_001031804	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
112154	chr19	5626871	5627200	+	0	NA	intron (NM_001320571, intron 2 of 18)	AluJo|SINE|Alu	3952	NM_001320572	6294		NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding
108102	chr18	61974071	61974780	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-81418	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
3433	chr1	15859871	15860650	+	0	NA	intron (NM_015001, intron 1 of 14)	AluJb|SINE|Alu	-12113	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
122101	chr19	48754021	48754480	+	0	NA	promoter-TSS (NM_001329877)	promoter-TSS (NM_001329877)	-590	NM_001329877	2523		NM_000148	ENSG00000174951	FUT1	H|HH|HSC	fucosyltransferase 1 (H blood group)	protein-coding
145312	chr20	41063251	41063580	+	0	NA	intron (NM_003286, intron 3 of 20)	L1PA16|LINE|L1	34593	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
211421	chr7	105053601	105054230	+	0	NA	intron (NM_182931, intron 3 of 26)	AluSz6|SINE|Alu	39710	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
90336	chr17	1178721	1178980	+	0	NA	intron (NM_001322841, intron 1 of 22)	intron (NM_001322841, intron 1 of 22)	1131	NM_021962	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
225461	chr9	35276251	35277100	+	0	NA	intron (NM_001371186, intron 7 of 38)	intron (NM_001371186, intron 7 of 38)	-65221	NM_001371187	10497		NM_006377	ENSG00000198722	UNC13B	MUNC13|UNC13|Unc13h2|munc13-2	unc-13 homolog B	protein-coding
18050	chr1	160622901	160624180	+	0	NA	exon (NM_001330754, exon 5 of 8)	exon (NM_001330754, exon 5 of 8)	23504	NR_104399	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
97541	chr17	44064521	44065100	+	0	NA	intron (NM_001371445, intron 1 of 4)	intron (NM_001371445, intron 1 of 4)	1861	NM_001369484	124801		NM_152344	ENSG00000161654	LSM12	PNAS-135	LSM12 homolog	protein-coding
239448	chrY	56712151	56713050	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-241655	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
133385	chr2	118169201	118169650	+	0	NA	Intergenic	Intergenic	16961	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
158270	chr22	50330701	50331200	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-3938	NM_001001794	414918		NM_001001794	ENSG00000205593	DENND6B	AFI1B|FAM116B	DENN domain containing 6B	protein-coding
128585	chr2	60913971	60914330	+	0	NA	intron (NM_001291746, intron 4 of 9)	intron (NM_001291746, intron 4 of 9)	32576	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
108474	chr18	70650871	70651250	+	0	NA	promoter-TSS (NR_160904)	promoter-TSS (NR_160904)	-106	NR_160904	220158		NM_178506	ENSG00000263417	GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1	ncRNA
219179	chr8	66548071	66548230	+	0	NA	Intergenic	MER50|LTR|ERV1	54584	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
50262	chr12	46263371	46263530	+	0	NA	intron (NM_001278387, intron 1 of 17)	MER102b|DNA|hAT-Charlie	3066	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
140745	chr2	234482271	234482430	+	0	NA	Intergenic	AluSp|SINE|Alu	14699	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
231473	chr9	131344901	131345180	+	0	NA	Intergenic	L1PA6|LINE|L1	-28611	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
91865	chr17	7232901	7233300	+	0	NA	intron (NM_004422, intron 1 of 14)	AluY|SINE|Alu	1417	NM_004422	1856		NM_004422	ENSG00000004975	DVL2	-	dishevelled segment polarity protein 2	protein-coding
227233	chr9	89255651	89255750	+	0	NA	Intergenic	AluYe5|SINE|Alu	-55495	NM_001827	1164		NM_001827	ENSG00000123975	CKS2	CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding
98722	chr17	48013901	48014100	+	0	NA	Intergenic	Intergenic	-18882	NR_162100	113218499		NR_162100		MIR10226	-	microRNA 10226	ncRNA
188743	chr5	157545951	157546250	+	0	NA	intron (NM_033274, intron 3 of 22)	L2a|LINE|L2	29675	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
138862	chr2	216693051	216693600	+	0	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	2224	NM_000599	3488		NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding
191361	chr6	7238801	7239250	+	0	NA	intron (NM_001003698, intron 10 of 11)	intron (NM_001003698, intron 10 of 11)	74174	NM_003144	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
148271	chr20	63689451	63689850	+	0	NA	intron (NM_032957, intron 23 of 34)	intron (NM_032957, intron 23 of 34)	-7002	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
225790	chr9	37488171	37488500	+	0	NA	intron (NM_001282766, intron 3 of 12)	MIR1_Amn|SINE|MIR	2387	NM_022490	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
107648	chr18	48977251	48977550	+	0	NA	Intergenic	L1ME2|LINE|L1	-26689	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
19002	chr1	169565901	169566100	+	0	NA	intron (NM_000130, intron 3 of 24)	intron (NM_000130, intron 3 of 24)	20481	NM_000130	2153		NM_000130	ENSG00000198734	F5	FVL|PCCF|RPRGL1|THPH2	coagulation factor V	protein-coding
58945	chr13	19775871	19776830	+	0	NA	intron (NM_001354909, intron 1 of 8)	AluJb|SINE|Alu	6595	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
91890	chr17	7281401	7283630	+	0	NA	intron (NM_001042, intron 1 of 10)	intron (NM_001042, intron 1 of 10)	797	NM_001042	6517		NM_001042	ENSG00000181856	SLC2A4	GLUT4	solute carrier family 2 member 4	protein-coding
121515	chr19	47210621	47211630	+	0	NA	TTS (NM_005500)	TTS (NM_005500)	-15817	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
50591	chr12	48587251	48587350	+	0	NA	Intergenic	AluY|SINE|Alu	-15455	NM_001384350	3906		NM_002289	ENSG00000167531	LALBA	HAMLET|LYZG	lactalbumin alpha	protein-coding
1084	chr1	1932271	1932430	+	0	NA	intron (NM_001304360, intron 25 of 38)	AluY|SINE|Alu	-13071	NM_178545	339456		NM_178545	ENSG00000178821	TMEM52	-	transmembrane protein 52	protein-coding
213163	chr7	131688971	131689450	+	0	NA	Intergenic	Intergenic	-132582	NM_005397	5420		NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1|PDX|PODXL1|gp135	podocalyxin like	protein-coding
20332	chr1	197768551	197768850	+	0	NA	intron (NM_001300858, intron 2 of 15)	intron (NM_001300858, intron 2 of 15)	6780	NR_125340	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
162237	chr3	47158571	47158930	+	0	NA	intron (NR_146158, intron 1 of 21)	Tigger2|DNA|TcMar-Tigger	5363	NM_001349370	29072		NM_012271	ENSG00000181555	SETD2	HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|MRD70|RAPAS|SET2|p231HBP	SET domain containing 2, histone lysine methyltransferase	protein-coding
155909	chr22	39557151	39557980	+	0	NA	Intergenic	CpG	-13188	NM_021096	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
24180	chr1	235885621	235886480	+	0	NA	Intergenic	Intergenic	-2337	NR_102436	1130		NM_000081	ENSG00000143669	LYST	CHS|CHS1|Mauve	lysosomal trafficking regulator	protein-coding
192314	chr6	21664671	21665030	+	0	NA	Intergenic	CpG	-1563	NR_015410	401237		NR_015410		CASC15	CANT|LINC00340|lnc-SOX4-1	cancer susceptibility 15	ncRNA
28726	chr10	61908921	61909180	+	0	NA	intron (NM_032199, intron 2 of 9)	L2a|LINE|L2	7351	NM_032199	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
228813	chr9	111958121	111958550	+	0	NA	Intergenic	LTR91|LTR|ERVL	26235	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
72409	chr15	31412851	31413150	+	0	NA	intron (NM_001302461, intron 1 of 1).3	L1M4b|LINE|L1	86165	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding
25703	chr10	8985521	8985980	+	0	NA	Intergenic	Intergenic	87761	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
174267	chr4	38138571	38138730	+	0	NA	3' UTR (NM_001253914, exon 6 of 6)	3' UTR (NM_001253914, exon 6 of 6)	18696	NM_001253915	23216		NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding
109745	chr19	1109071	1109480	+	0	NA	intron (NM_001100122, intron 26 of 28).2	CpG-12987	4625	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
96749	chr17	41698121	41698480	+	0	NA	Intergenic	Charlie21a|DNA|hAT-Charlie	9415	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
187478	chr5	142148501	142148900	+	0	NA	intron (NM_030571, intron 7 of 7)	AluSx|SINE|Alu	39921	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
86570	chr16	67226321	67227630	+	0	NA	promoter-TSS (NM_012163)	promoter-TSS (NM_012163)	23	NM_001004055	26231		NM_012163	ENSG00000293507	FBXL9P	FBL9|FBXL9|LRRC29	F-box and leucine rich repeat protein, pseudogene	pseudo
182826	chr5	69190301	69191130	+	0	NA	intron (NM_022909, intron 1 of 8)	AluSx1|SINE|Alu	1132	NM_022909	64946		NM_022909	ENSG00000153044	CENPH	-	centromere protein H	protein-coding
178499	chr4	150647551	150647650	+	0	NA	intron (NM_001367550, intron 37 of 56)	AluJr4|SINE|Alu	65449	NM_006439	10586		NM_006439	ENSG00000181541	MAB21L2	MCOPS14|MCSKS14	mab-21 like 2	protein-coding
53635	chr12	68189771	68190550	+	0	NA	Intergenic	Intergenic	-30420	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
35091	chr11	630421	630680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3369	NM_021920	6343		NM_021920	ENSG00000070031	SCT	-	secretin	protein-coding
31099	chr10	89260371	89260930	+	0	NA	Intergenic	Intergenic	-8611	NM_001288979	3988		NM_000235	ENSG00000107798	LIPA	CESD|LAL	lipase A, lysosomal acid type	protein-coding
155659	chr22	39017471	39017830	+	0	NA	intron (NM_014508, intron 2 of 3)	intron (NM_014508, intron 2 of 3)	3393	NM_014508	27350		NM_014508	ENSG00000244509	APOBEC3C	A3C|APOBEC1L|ARDC2|ARDC4|ARP5|PBI|bK150C2.3	apolipoprotein B mRNA editing enzyme catalytic subunit 3C	protein-coding
172563	chr4	2418001	2419800	+	0	NA	promoter-TSS (NM_001172658)	promoter-TSS (NM_001172658)	-55	NM_001193282	402160		NM_001193282	ENSG00000206113	CFAP99	-	cilia and flagella associated protein 99	protein-coding
123440	chr19	54128251	54128780	+	0	NA	intron (NM_015629, intron 11 of 13)	intron (NM_015629, intron 11 of 13)	-9247	NM_014516	4849		NM_014516	ENSG00000088038	CNOT3	IDDSADF|LENG2|NOT3|NOT3H	CCR4-NOT transcription complex subunit 3	protein-coding
221883	chr8	128543301	128543950	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	21054	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
237856	chrX	130164051	130164350	+	0	NA	intron (NM_004208, intron 1 of 15)	intron (NM_004208, intron 1 of 15)	1641	NM_004208	9131		NM_004208	ENSG00000156709	AIFM1	AIF|AUNX1|CMT2D|CMTX4|COWCK|COXPD6|DFNX5|NADMR|NAMSD|PDCD8|SEMDHL	apoptosis inducing factor mitochondria associated 1	protein-coding
63420	chr13	114090371	114091130	+	0	NA	intron (NM_001320821, intron 1 of 25).2	intron (NM_001320821, intron 1 of 25).2	-12795	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
164533	chr3	63938601	63938800	+	0	NA	intron (NM_001177387, intron 3 of 12)	intron (NM_001177387, intron 3 of 12)	26588	NM_001377406	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
147576	chr20	61102251	61102350	+	0	NA	Intergenic	Intergenic	23236	NR_109919	100506470		NR_109919	ENSG00000229606	LINC01718	-	long intergenic non-protein coding RNA 1718	ncRNA
188644	chr5	157230971	157231630	+	0	NA	intron (NM_005546, intron 7 of 16)	MER117|DNA|hAT-Charlie	-34823	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
98526	chr17	47647201	47647630	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2504	NM_002265	3837		NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding
214185	chr7	146796951	146797050	+	0	NA	intron (NM_014141, intron 1 of 22)	AluY|SINE|Alu	22729	NM_014141	26047		NM_014141	ENSG00000174469	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein 2	protein-coding
34478	chr10	132506921	132507680	+	0	NA	Intergenic	Intergenic	29623	NR_158224	107984282		NR_158224		LOC107984282	-	uncharacterized LOC107984282	ncRNA
95503	chr17	36377851	36378230	+	0	NA	exon (NM_001123392, exon 14 of 14).3	exon (NM_001123392, exon 14 of 14).3	10383	NM_001291463	102724862		NM_001291463	ENSG00000274933	TBC1D3I	PRC17|TBC1D3|TBC1D3A	TBC1 domain family member 3I	protein-coding
26549	chr10	21588201	21588400	+	0	NA	intron (NR_136736, intron 5 of 25)	AluSz|SINE|Alu	54068	NM_001195626	8028		NM_004641	ENSG00000078403	MLLT10	AF10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein-coding
32915	chr10	110210601	110211700	+	0	NA	intron (NM_001008541, intron 1 of 4)	intron (NM_001008541, intron 1 of 4)	919	NM_001008541	4601		NM_005962	ENSG00000119950	MXI1	MAD2|MXD2|MXI|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
88342	chr16	84546021	84546480	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-41591	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
211233	chr7	102642651	102643450	+	0	NA	promoter-TSS (NM_001114403)	promoter-TSS (NM_001114403)	-259	NM_001114403	100134938		NM_001114403	ENSG00000267368	UPK3BL1	UPK3BL|UPLP	uroplakin 3B like 1	protein-coding
202634	chr6	158753821	158754680	+	0	NA	intron (NM_001318745, intron 10 of 14)	Charlie2a|DNA|hAT-Charlie	10503	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
227421	chr9	89701171	89701730	+	0	NA	intron (NR_024280, intron 4 of 5)	intron (NR_024280, intron 4 of 5)	61667	NR_024280	100129066		NR_024280	ENSG00000237372	LINC03062	-	long intergenic non-protein coding RNA 3062	ncRNA
50986	chr12	49621621	49624050	+	0	NA	promoter-TSS (NM_012272)	promoter-TSS (NM_012272)	-726	NM_001379037	25766		NM_012272	ENSG00000110844	PRPF40B	HYPC	pre-mRNA processing factor 40 homolog B	protein-coding
167048	chr3	126731171	126731330	+	0	NA	intron (NM_032343, intron 3 of 7)	intron (NM_032343, intron 3 of 7)	27010	NM_032343	84303		NM_032343	ENSG00000159685	CHCHD6	CHCM1|MICOS25|Mic25|PPP1R23	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding
27978	chr10	42781201	42781600	+	0	NA	Intergenic	L2|LINE|L2	-1395	NM_014753	9790		NM_014753	ENSG00000165733	BMS1	ACC|BMS1L	BMS1 ribosome biogenesis factor	protein-coding
223200	chr8	143581251	143581550	+	0	NA	intron (NM_001330646, intron 2 of 6)	intron (NM_001330646, intron 2 of 6)	-3070	NM_001363145	93100		NM_145201	ENSG00000147813	NAPRT	NAPRT1|PP3856	nicotinate phosphoribosyltransferase	protein-coding
6223	chr1	27499551	27500050	+	0	NA	Intergenic	AluY|SINE|Alu	-9633	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
79724	chr16	1323051	1323550	+	0	NA	intron (NM_194259, intron 7 of 7)	AluY|SINE|Alu	-10345	NM_001199099	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
16	chr1	26371	26530	+	0	NA	intron (NR_024540, intron 1 of 10)	intron (NR_024540, intron 1 of 10)	2920	NR_024540	653635		NR_024540		WASH7P	FAM39F|WASH5P	WASP family homolog 7, pseudogene	pseudo
157595	chr22	46007401	46007800	+	0	NA	non-coding (NR_027240, exon 1 of 1)	non-coding (NR_027240, exon 1 of 1)	984	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
224312	chr9	6679321	6679730	+	0	NA	Intergenic	AluSz6|SINE|Alu	-33796	NM_000170	2731		NM_000170	ENSG00000178445	GLDC	GCE|GCE1|GCSP|HYGN1	glycine decarboxylase	protein-coding
117515	chr19	20149451	20149550	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-17714	NM_052852	90649		NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
193735	chr6	31254251	31254350	+	0	NA	Intergenic	L1PA6|LINE|L1	17792	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
218932	chr8	60908821	60910480	+	0	NA	non-coding (NR_168430, exon 3 of 3)	non-coding (NR_168430, exon 3 of 3)	1148	NR_168431	105375938		NR_168430		LOC105375938	-	uncharacterized LOC105375938	ncRNA
184591	chr5	102888551	102889100	+	0	NA	intron (NR_033440, intron 2 of 23)	intron (NR_033440, intron 2 of 23)	23002	NR_033440	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
173306	chr4	7193551	7193850	+	0	NA	intron (NM_020777, intron 1 of 26)	CpG	1162	NM_020777	57537		NM_020777	ENSG00000184985	SORCS2	-	sortilin related VPS10 domain containing receptor 2	protein-coding
194255	chr6	32558521	32558850	+	0	NA	intron (NR_001298, intron 1 of 5)	intron (NR_001298, intron 1 of 5)	1317	NR_001298	3128		NR_001298	ENSG00000290878	HLA-DRB6	-	major histocompatibility complex, class II, DR beta 6 (pseudogene)	pseudo
56202	chr12	111452921	111453180	+	0	NA	intron (NM_002973, intron 24 of 24)	intron (NM_002973, intron 24 of 24)	18188	NM_001291424	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
175170	chr4	55907171	55908080	+	0	NA	Intergenic	L1ME3E|LINE|L1	-41320	NM_025009	9662		NM_014645	ENSG00000174799	CEP135	CEP4|KIAA0635|MCPH8	centrosomal protein 135	protein-coding
49809	chr12	31972301	31972700	+	0	NA	intron (NM_018169, intron 3 of 5)	AluY|SINE|Alu	13085	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
89077	chr16	88464971	88465430	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	-3718	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
219222	chr8	66716221	66716480	+	0	NA	intron (NM_001033578, intron 1 of 16)	intron (NM_001033578, intron 1 of 16)	3569	NM_001033578	23678		NM_013257	ENSG00000104205	SGK3	CISK|SGK2|SGKL	serum/glucocorticoid regulated kinase family member 3	protein-coding
85186	chr16	46882451	46882750	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	-1762	NM_133443	84706		NM_133443	ENSG00000166123	GPT2	ALT2|GPT 2|MRT49|NEDSPM	glutamic--pyruvic transaminase 2	protein-coding
93051	chr17	17403771	17404950	+	0	NA	Intergenic	Intergenic	-72640	NM_018019	55090		NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding
223081	chr8	143409321	143409780	+	0	NA	Intergenic	Intergenic	-8129	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
40397	chr11	64035351	64035850	+	0	NA	promoter-TSS (NM_013280)	promoter-TSS (NM_013280)	-331	NM_013280	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
236295	chrX	67546171	67546530	+	0	NA	exon (NM_000044, exon 1 of 8)	exon (NM_000044, exon 1 of 8)	1727	NM_001011645	367		NM_000044	ENSG00000169083	AR	AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM	androgen receptor	protein-coding
16374	chr1	154355271	154355830	+	0	NA	Intergenic	AluSx|SINE|Alu	26752	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
202733	chr6	158991401	158991850	+	0	NA	intron (NR_144434, intron 2 of 8)	L1MDa|LINE|L1	8562	NR_144434	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
86329	chr16	66360901	66361100	+	0	NA	Intergenic	Intergenic	-5691	NM_001795	1003		NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
28522	chr10	50414171	50414330	+	0	NA	intron (NM_147156, intron 6 of 10)	AluJr|SINE|Alu	-162734	NM_001143974	56624		NM_019893	ENSG00000188611	ASAH2	BCDase|HNAC1|LCDase|N-CDase|NCDase	N-acylsphingosine amidohydrolase 2	protein-coding
54086	chr12	76058201	76058600	+	0	NA	intron (NM_139207, intron 6 of 15)	AluSx3|SINE|Alu	26285	NM_001330231	4673		NM_004537	ENSG00000187109	NAP1L1	NAP1|NAP1L|NRP	nucleosome assembly protein 1 like 1	protein-coding
184417	chr5	98921451	98922330	+	0	NA	intron (NR_157078, intron 2 of 36)	AluSg7|SINE|Alu	-6672	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
25135	chr10	4120321	4120700	+	0	NA	Intergenic	Intergenic	68784	NR_120632								
134363	chr2	136211471	136212000	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-93586	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
27741	chr10	35135871	35136730	+	0	NA	intron (NM_183060, intron 1 of 5)	L2c|LINE|L2	-1482	NM_183012	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
88708	chr16	85900001	85900280	+	0	NA	intron (NM_002163, intron 1 of 8)	intron (NM_002163, intron 1 of 8)	978	NM_002163	3394		NM_002163	ENSG00000140968	IRF8	H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8	interferon regulatory factor 8	protein-coding
189666	chr5	176368601	176368800	+	0	NA	TTS (NR_031569)	TTS (NR_031569)	754	NR_031569	100302203		NR_031569	ENSG00000221464	MIR1271	MIRN1271|hsa-mir-1271	microRNA 1271	ncRNA
200863	chr6	138654771	138654950	+	0	NA	Intergenic	L1ME3G|LINE|L1	-36808	NR_033896	441172		NR_033896		NHSL1-AS1	-	NHSL1 antisense RNA 1	ncRNA
118039	chr19	34232571	34233280	+	0	NA	Intergenic	Intergenic	-21629	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
46616	chr11	128609901	128610300	+	0	NA	Intergenic	AluSx|SINE|Alu	-22542	NM_001143820	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
217883	chr8	37869151	37869450	+	0	NA	intron (NM_025151, intron 4 of 4)	intron (NM_025151, intron 4 of 4)	-19439	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
139208	chr2	219278601	219280480	+	0	NA	intron (NM_001039550, intron 1 of 9)	CpG	174	NM_006736	3300		NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HMNR5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
71530	chr14	106177001	106177980	+	0	NA	Intergenic	Intergenic	-110184	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
128359	chr2	54984551	54984950	+	0	NA	intron (NM_207520, intron 3 of 7)	intron (NM_207520, intron 3 of 7)	25522	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133559	chr2	121284651	121285300	+	0	NA	intron (NM_014553, intron 1 of 14)	CpG	227	NM_014553	29842		NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
54273	chr12	89019371	89019900	+	0	NA	promoter-TSS (NR_038385)	promoter-TSS (NR_038385)	57	NR_038385	728084		NR_038385	ENSG00000246363	LINC02458	-	long intergenic non-protein coding RNA 2458	ncRNA
147772	chr20	62524751	62524850	+	0	NA	Intergenic	Intergenic	-25653	NM_178463	128826		NM_178463	ENSG00000174407	MIR1-1HG	C20orf166|MIR133A2HG	MIR1-1 host gene	ncRNA
203557	chr7	893751	893950	+	0	NA	intron (NM_015949, intron 7 of 8)	intron (NM_015949, intron 7 of 8)	17296	NM_015949	51608		NM_015949	ENSG00000239857	GET4	C7orf20|CDG2Y|CEE|CGI-20|TRC35	guided entry of tail-anchored proteins factor 4	protein-coding
134069	chr2	131510651	131510950	+	0	NA	intron (NR_026922, intron 10 of 17)	intron (NR_026922, intron 10 of 17)	-16875	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
191848	chr6	15250571	15250730	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	1795	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
129125	chr2	65237421	65237680	+	0	NA	intron (NM_005722, intron 1 of 8)	intron (NM_005722, intron 1 of 8)	9719	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
204067	chr7	2030921	2031650	+	0	NA	intron (NM_001304524, intron 10 of 16)	intron (NM_001304524, intron 10 of 16)	57767	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
19194	chr1	172357721	172359530	+	0	NA	intron (NM_015569, intron 17 of 20)	intron (NM_015569, intron 17 of 20)	-62060	NM_139240	92346		NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding
137016	chr2	190675151	190675830	+	0	NA	intron (NM_001321315, intron 3 of 5)	intron (NM_001321315, intron 3 of 5)	16332	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
9558	chr1	51616771	51618230	+	0	NA	intron (NM_148906, intron 1 of 22)	intron (NM_148906, intron 1 of 22)	408	NR_036662	114883		NM_024586	ENSG00000117859	OSBPL9	ORP-9|ORP9	oxysterol binding protein like 9	protein-coding
152822	chr22	21869701	21870330	+	0	NA	Intergenic	AluY|SINE|Alu	-2335	NM_138957	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
198756	chr6	108588551	108588950	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	27833	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
199873	chr6	127810871	127811230	+	0	NA	intron (NM_001164685, intron 4 of 6)	(CAA)n|Simple_repeat|Simple_repeat	44138	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
105920	chr18	3457371	3457750	+	0	NA	exon (NM_001278686, exon 4 of 4)	exon (NM_001278686, exon 4 of 4)	3786	NM_173211	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
128053	chr2	47782421	47785000	+	0	NA	promoter-TSS (NM_001281494)	promoter-TSS (NM_001281494)	-245	NM_001281494	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
124913	chr2	8511621	8512780	+	0	NA	Intergenic	Intergenic	71592	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
79212	chr16	357801	358630	+	0	NA	Intergenic	Intergenic	-5492	NM_181050	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
68593	chr14	89508951	89509280	+	0	NA	intron (NM_001085471, intron 1 of 6)	L2a|LINE|L2	-67101	NR_024620	29018		NM_014099	ENSG00000259073	FOXN3-AS2	PRO1768	FOXN3 antisense RNA 2	ncRNA
96967	chr17	42247701	42247900	+	0	NA	intron (NM_012448, intron 1 of 18)	AluJo|SINE|Alu	28591	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
178477	chr4	148439601	148440280	+	0	NA	intron (NM_001354819, intron 1 of 7)	L3|LINE|CR1	2474	NM_001166104	4306		NM_000901	ENSG00000151623	NR3C2	MCR|MLR|MR|NR3C2VIT	nuclear receptor subfamily 3 group C member 2	protein-coding
189698	chr5	176449921	176450680	+	0	NA	intron (NM_014613, intron 1 of 10)	intron (NM_014613, intron 1 of 10)	1915	NM_014613	23197		NM_014613	ENSG00000113194	FAF2	ETEA|UBXD8|UBXN3B	Fas associated factor family member 2	protein-coding
131500	chr2	96535401	96537500	+	0	NA	promoter-TSS (NM_001319085)	promoter-TSS (NM_001319085)	-302	NM_001319085	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
119947	chr19	41873071	41873700	+	0	NA	TTS (NM_001321485)	TTS (NM_001321485)	3758	NR_106855	102465478		NR_106855	ENSG00000276926	MIR6797	hsa-mir-6797	microRNA 6797	ncRNA
232780	chr9	136691971	136692200	+	0	NA	Intergenic	Intergenic	-4628	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
61285	chr13	50133721	50134180	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	-8409	NR_152566	8847		NM_006021	ENSG00000231607	DLEU2	ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2	ncRNA
124282	chr19	57821121	57821850	+	0	NA	Intergenic	Intergenic	5977	NR_024162	2282		NR_024162		FKBP1AP1	FKBP12|FKBP1P1	FKBP prolyl isomerase 1A pseudogene 1	pseudo
8812	chr1	42945121	42945980	+	0	NA	intron (NM_006516, intron 1 of 9)	AluSz6|SINE|Alu	13318	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
70551	chr14	102543071	102543680	+	0	NA	Intergenic	Intergenic	-1879	NR_146561	105370681		NR_146561	ENSG00000259230	LINC02323	-	long intergenic non-protein coding RNA 2323	ncRNA
39422	chr11	60869801	60870650	+	0	NA	intron (NM_207341, intron 3 of 11)	intron (NM_207341, intron 3 of 11)	2683	NM_207341	22917		NM_207341	ENSG00000149506	ZP1	HEL163|OOMD|OOMD1|OZEMA1|ZPB1	zona pellucida glycoprotein 1	protein-coding
230103	chr9	127577551	127577850	+	0	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	1331	NM_001035534	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
118333	chr19	35592301	35592580	+	0	NA	Intergenic	MIR|SINE|MIR	-5455	NR_110750	102723617		NR_110750	ENSG00000224910	LINC01766	-	long intergenic non-protein coding RNA 1766	ncRNA
187795	chr5	146211621	146211880	+	0	NA	intron (NM_018989, intron 1 of 20)	AluSp|SINE|Alu	8145	NM_018989	54439		NM_018989	ENSG00000091009	RBM27	ARRS1|Psc1|ZC3H18|ZC3H20	RNA binding motif protein 27	protein-coding
33143	chr10	112381971	112382480	+	0	NA	intron (NM_016234, intron 1 of 20)	intron (NM_016234, intron 1 of 20)	6027	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
216738	chr8	22452701	22453100	+	0	NA	intron (NM_005605, intron 1 of 13)	intron (NM_005605, intron 1 of 13)	11822	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
202116	chr6	154772321	154772750	+	0	NA	intron (NM_001286189, intron 3 of 21)	AluJb|SINE|Alu	39119	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
32727	chr10	104274501	104275350	+	0	NA	promoter-TSS (NM_001191014)	promoter-TSS (NM_001191014)	-241	NM_001191014	119391		NM_183239	ENSG00000065621	GSTO2	GSTO 2-2|bA127L20.1	glutathione S-transferase omega 2	protein-coding
193869	chr6	31572031	31573330	+	0	NA	promoter-TSS (NR_149045)	promoter-TSS (NR_149045)	23	NR_149045	100287329		NR_149045		LOC100287329	-	uncharacterized LOC100287329	ncRNA
53910	chr12	71642321	71642580	+	0	NA	exon (NM_144982, exon 6 of 35)	exon (NM_144982, exon 6 of 35)	21398	NM_144982	196441		NM_144982	ENSG00000133858	ZFC3H1	CCDC131|CSRC2|PSRC2	zinc finger C3H1-type containing	protein-coding
165276	chr3	75614051	75614350	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-16563	NR_031714	100302212		NR_031714	ENSG00000283894	MIR1324	MIRN1324|hsa-mir-1324	microRNA 1324	ncRNA
221259	chr8	122782201	122784380	+	0	NA	intron (NM_014943, intron 1 of 3)	intron (NM_014943, intron 1 of 3)	1635	NM_014943	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
102610	chr17	75940321	75941830	+	0	NA	TTS (NM_007292)	TTS (NM_007292)	-2843	NM_001319193	85302		NM_001080542	ENSG00000188878	FBF1	Alb|FBF-1	Fas binding factor 1	protein-coding
47588	chr12	4809801	4810280	+	0	NA	5' UTR (NM_002235, exon 1 of 2)	5' UTR (NM_002235, exon 1 of 2)	864	NM_002235	3742		NM_002235	ENSG00000151079	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel subfamily A member 6	protein-coding
234962	chrX	39174501	39175650	+	0	NA	Intergenic	Intergenic	152287	NR_038968	286442		NR_038968	ENSG00000235304	LINC01281	-	long intergenic non-protein coding RNA 1281	ncRNA
67171	chr14	68800301	68800800	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-4307	NM_001244701	677		NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding
101493	chr17	67647321	67648030	+	0	NA	intron (NM_181671, intron 6 of 9)	intron (NM_181671, intron 6 of 9)	-70158	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
219197	chr8	66615271	66616150	+	0	NA	Intergenic	L1MA1|LINE|L1	-2492	NM_001080416	4603		NM_001080416	ENSG00000185697	MYBL1	A-MYB|AMYB	MYB proto-oncogene like 1	protein-coding
238494	chrX	153582751	153583250	+	0	NA	TTS (NM_021949)	TTS (NM_021949)	16139	NM_001130997	92002		NM_152274	ENSG00000262919	CCNQ	CycM|FAM58A	cyclin Q	protein-coding
144461	chr20	35583721	35583980	+	0	NA	intron (NR_119376, intron 23 of 42)	intron (NR_119376, intron 23 of 42)	23712	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
114711	chr19	13157821	13159080	+	0	NA	Intergenic	Intergenic	8039	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
154791	chr22	36816021	36816280	+	0	NA	intron (NM_001315532, intron 1 of 3)	intron (NM_001315532, intron 1 of 3)	885	NM_001315532	5816		NM_002854	ENSG00000100362	PVALB	D22S749	parvalbumin	protein-coding
161935	chr3	46104601	46104800	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-18856	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
104264	chr17	80773121	80773780	+	0	NA	intron (NM_020761, intron 6 of 33)	intron (NM_020761, intron 6 of 33)	32182	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
144790	chr20	36637501	36638050	+	0	NA	intron (NM_175077, intron 2 of 7)	AluSx|SINE|Alu	8421	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
154460	chr22	35537371	35537730	+	0	NA	intron (NM_001376515, intron 1 of 2)	MIRb|SINE|MIR	-2350	NM_001376516	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
15825	chr1	151325201	151326100	+	0	NA	intron (NM_001369629, intron 1 of 12)	intron (NM_001369629, intron 1 of 12)	1766	NM_001198774	5298		NM_002651	ENSG00000143393	PI4KB	DFNA87|NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIII|PI4KIIIBETA|PIK4CB	phosphatidylinositol 4-kinase beta	protein-coding
7486	chr1	33181801	33183700	+	0	NA	promoter-TSS (NM_018207)	promoter-TSS (NM_018207)	-707	NM_018207	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
7361	chr1	32800471	32800630	+	0	NA	intron (NM_003680, intron 4 of 12)	intron (NM_003680, intron 4 of 12)	-16892	NM_001256121	64766		NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding
47312	chr12	1703321	1703580	+	0	NA	intron (NM_001375365, intron 1 of 7).2	intron (NM_001375365, intron 1 of 7).2	12380	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
107305	chr18	44819451	44819550	+	0	NA	intron (NM_001130110, intron 2 of 3)	MIRc|SINE|MIR	118625	NM_001379142	26040		NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding
29119	chr10	68349371	68349930	+	0	NA	intron (NM_001330103, intron 16 of 17)	AluY|SINE|Alu	-16722	NM_001033083	64081		NM_022129	ENSG00000108187	PBLD	HEL-S-306|MAWBP|MAWDBP	phenazine biosynthesis like protein domain containing	protein-coding
164112	chr3	56682021	56682700	+	0	NA	intron (NM_001365638, intron 1 of 22)	intron (NM_001365638, intron 1 of 22)	877	NM_001363940	23272		NM_015224	ENSG00000163946	TASOR	C3orf63|FAM208A|RAP140|TASOR1|se89-1	transcription activation suppressor	protein-coding
67878	chr14	74298921	74299500	+	0	NA	intron (NR_148468, intron 1 of 14)	intron (NR_148468, intron 1 of 14)	3724	NM_020324	5826		NM_005050	ENSG00000119688	ABCD4	ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L	ATP binding cassette subfamily D member 4	protein-coding
86099	chr16	57648621	57649730	+	0	NA	intron (NM_001370454, intron 2 of 13)	intron (NM_001370454, intron 2 of 13)	9683	NM_001290144	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
10804	chr1	77758921	77760380	+	0	NA	5' UTR (NM_001377438, exon 1 of 25)	5' UTR (NM_001377438, exon 1 of 25)	202	NM_001377431	23032		NM_015017	ENSG00000077254	USP33	VDU1	ubiquitin specific peptidase 33	protein-coding
208315	chr7	66122151	66122450	+	0	NA	intron (NM_001040648, intron 1 of 2)	AluY|SINE|Alu	7453	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
29317	chr10	69348771	69349330	+	0	NA	intron (NM_033498, intron 5 of 20)	intron (NM_033498, intron 5 of 20)	30203	NM_001322367	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
40027	chr11	62674371	62674680	+	0	NA	TTS (NM_001085372)	TTS (NM_001085372)	-2742	NR_160410								
195574	chr6	37502231	37504530	+	0	NA	Intergenic	Intergenic	-3487	NM_138493	154467		NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding
106484	chr18	14447751	14448050	+	0	NA	Intergenic	Intergenic	50806	NR_024076	440224		NR_024076	ENSG00000293262	CXADRP3	-	CXADR pseudogene 3	pseudo
84220	chr16	29960671	29960830	+	0	NA	Intergenic	AluJr|SINE|Alu	-1329	NR_161465	124446		NM_194280	ENSG00000149932	TMEM219	IGFBP-3R|IGFBP3R	transmembrane protein 219	protein-coding
156280	chr22	40456471	40456830	+	0	NA	intron (NM_001282661, intron 4 of 13)	AluSz6|SINE|Alu	6790	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
126575	chr2	28753201	28753900	+	0	NA	intron (NM_206876, intron 2 of 8)	intron (NM_206876, intron 2 of 8)	1720	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
58031	chr12	124435371	124436730	+	0	NA	intron (NM_001077261, intron 10 of 47)	intron (NM_001077261, intron 10 of 47)	-98808	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
114442	chr19	12698271	12698600	+	0	NA	TTS (NM_001382241)	TTS (NM_001382241)	-1804	NM_032301	84261		NM_032301	ENSG00000132004	FBXW9	Fbw9|MEC-15	F-box and WD repeat domain containing 9	protein-coding
31570	chr10	97328501	97328700	+	0	NA	Intergenic	Intergenic	6129	NM_012083	23401		NM_012083	ENSG00000181274	FRAT2	FRAT-2	FRAT regulator of WNT signaling pathway 2	protein-coding
38066	chr11	35184871	35185250	+	0	NA	intron (NM_001202557, intron 3 of 8)	L2a|LINE|L2	22110	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
173581	chr4	10158601	10159000	+	0	NA	Intergenic	Intergenic	-42001	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
183744	chr5	81297321	81297580	+	0	NA	intron (NR_034122, intron 1 of 3)	L2c|LINE|L2	4119	NR_034122	100131067		NR_034121	ENSG00000247572	CKMT2-AS1	-	CKMT2 antisense RNA 1	ncRNA
161502	chr3	42541171	42541330	+	0	NA	Intergenic	Intergenic	-8644	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
192251	chr6	20209701	20210300	+	0	NA	intron (NM_001080480, intron 1 of 12)	LTR33|LTR|ERVL	2469	NR_073465	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
182595	chr5	66013051	66013150	+	0	NA	intron (NM_001253697, intron 5 of 25)	MER20|DNA|hAT-Charlie	-67527	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
37182	chr11	14078651	14079250	+	0	NA	intron (NM_006108, intron 4 of 15)	intron (NM_006108, intron 4 of 15)	116227	NM_006108	10418		NM_006108	ENSG00000262655	SPON1	VSGP/F-spondin|f-spondin	spondin 1	protein-coding
103473	chr17	78346551	78347000	+	0	NA	Intergenic	MamSINE1|SINE|tRNA-RTE	12892	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
212181	chr7	116997371	116997530	+	0	NA	intron (NR_161422, intron 1 of 14)	LTR12C|LTR|ERV1	-17462	NM_001369602	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
174248	chr4	37976001	37976300	+	0	NA	intron (NM_015173, intron 2 of 19)	MLT1F2|LTR|ERVL-MaLR	15752	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
63922	chr14	21991201	21991980	+	0	NA	Intergenic	LTR41C|LTR|ERVL	-320573	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
236413	chrX	71252001	71252400	+	0	NA	intron (NM_201599, intron 2 of 24)	intron (NM_201599, intron 2 of 24)	1940	NM_201599	9203		NM_005096	ENSG00000147130	ZMYM3	DXS6673E|MYM|XFIM|XLID112|ZNF198L2|ZNF261	zinc finger MYM-type containing 3	protein-coding
201385	chr6	145372551	145373080	+	0	NA	Intergenic	MER57C2|LTR|ERV1	314062	NM_001368132	7957		NM_005670	ENSG00000112425	EPM2A	EPM2|MELF|MELF2	EPM2A glucan phosphatase, laforin	protein-coding
63893	chr14	21856371	21856830	+	0	NA	Intergenic	LTR82A|LTR|ERVL	-185583	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
150799	chr21	43916401	43918880	+	0	NA	intron (NM_001369880, intron 1 of 8)	LTR36|LTR|ERV1	852	NM_001369880	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
146281	chr20	49103771	49104330	+	0	NA	Intergenic	Intergenic	57738	NM_001362762	1434		NM_001316	ENSG00000124207	CSE1L	CAS|CSE1|XPO2	chromosome segregation 1 like	protein-coding
110719	chr19	2312801	2313600	+	0	NA	Intergenic	Intergenic	-5046	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
140469	chr2	233175721	233176250	+	0	NA	intron (NM_001017915, intron 17 of 26).2	intron (NM_001017915, intron 17 of 26).2	-75586	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
66639	chr14	63859821	63861550	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	7681	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
104786	chr17	81719671	81720280	+	0	NA	intron (NM_012140, intron 10 of 10)	intron (NM_012140, intron 10 of 10)	7691	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
145737	chr20	45080771	45081130	+	0	NA	TTS (NM_001352385)	TTS (NM_001352385)	20177	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
44927	chr11	115759951	115760600	+	0	NA	promoter-TSS (NR_034148)	promoter-TSS (NR_034148)	-75	NR_034148	283143		NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
234616	chrX	19836171	19836950	+	0	NA	intron (NM_001353892, intron 1 of 17)	intron (NM_001353892, intron 1 of 17)	-3409	NM_001353895	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
237669	chrX	124338901	124339500	+	0	NA	Intergenic	Intergenic	6540	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
183643	chr5	80247201	80247850	+	0	NA	intron (NM_001174072, intron 1 of 11)	intron (NM_001174072, intron 1 of 11)	8523	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
107667	chr18	49052921	49053730	+	0	NA	intron (NM_001374431, intron 16 of 16)	intron (NM_001374431, intron 16 of 16)	-3557	NR_039898	100616420		NR_039898	ENSG00000263849	MIR4744	-	microRNA 4744	ncRNA
110687	chr19	2280601	2280750	+	0	NA	intron (NM_198532, intron 2 of 3)	intron (NM_198532, intron 2 of 3)	1500	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
156334	chr22	40709721	40709980	+	0	NA	Intergenic	MIR3|SINE|MIR	30366	NM_005297	2847		NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding
155866	chr22	39487551	39487950	+	0	NA	exon (NM_002409, exon 2 of 2)	exon (NM_002409, exon 2 of 2)	526	NM_001098270	4248		NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase	protein-coding
134110	chr2	134104571	134105030	+	0	NA	Intergenic	MamRep488|DNA|hAT-Tip100	-15135	NM_001371457	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
156001	chr22	39930701	39931530	+	0	NA	intron (NM_001291828, intron 1 of 4)	L2b|LINE|L2	4511	NM_001291828	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
220900	chr8	106434971	106435130	+	0	NA	intron (NM_018002, intron 2 of 15)	L2a|LINE|L2	-12874	NM_001198532	55074		NM_018002	ENSG00000164830	OXR1	CHEGDD|Nbla00307|TLDC3	oxidation resistance 1	protein-coding
126462	chr2	28357071	28357500	+	0	NA	Intergenic	Intergenic	-35573	NM_005253	2355		NM_005253	ENSG00000075426	FOSL2	ACED|FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding
1955	chr1	6578151	6578800	+	0	NA	intron (NM_138697, intron 5 of 5)	intron (NM_138697, intron 5 of 5)	-1519	NM_001278648	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
238006	chrX	134838651	134838750	+	0	NA	intron (NR_158603, intron 4 of 9)	SVA_D|Retroposon|SVA	31463	NM_001170784	159091		NM_138819	ENSG00000156500	PABIR3	FAM122C	PABIR family member 3	protein-coding
85208	chr16	47114051	47114350	+	0	NA	intron (NM_001201477, intron 6 of 8)	L1ME1|LINE|L1	29745	NM_018092	81831		NM_018092	ENSG00000171208	NETO2	BTCL2|NEOT2	neuropilin and tolloid like 2	protein-coding
237580	chrX	123732241	123732350	+	0	NA	intron (NM_001081550, intron 1 of 38)	intron (NM_001081550, intron 1 of 38)	757	NM_001081550	57187		NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|XLID12|dJ506G2.1|hTREX120	THO complex subunit 2	protein-coding
130061	chr2	74462171	74462330	+	0	NA	exon (NM_001146158, exon 5 of 5)	exon (NM_001146158, exon 5 of 5)	3132	NM_006302	7841		NM_006302	ENSG00000115275	MOGS	CDG2B|CWH41|DER7|GCS1	mannosyl-oligosaccharide glucosidase	protein-coding
146000	chr20	46410701	46411600	+	0	NA	intron (NR_146919, intron 1 of 3)	intron (NR_146919, intron 1 of 3)	-4099	NM_182764	63916		NM_022086	ENSG00000062598	ELMO2	CED-12|CED12|Ced-12A|ELMO-2|VMPI	engulfment and cell motility 2	protein-coding
223814	chr8	144824221	144824930	+	0	NA	intron (NR_147501, intron 1 of 4)	MER74B|LTR|ERVL	2465	NR_147501	100130027		NR_147501		LOC100130027	-	uncharacterized LOC100130027	ncRNA
91423	chr17	4718521	4718930	+	0	NA	intron (NM_001257329, intron 11 of 14)	intron (NM_001257329, intron 11 of 14)	8093	NM_199004	409		NM_004313	ENSG00000141480	ARRB2	ARB2|ARR2|BARR2	arrestin beta 2	protein-coding
74438	chr15	59371651	59373080	+	0	NA	intron (NM_004998, intron 1 of 27)	CpG	506	NM_004998	4643		NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding
220650	chr8	101108301	101111230	+	0	NA	Intergenic	Intergenic	57711	NR_033962	441374		NR_033962	ENSG00000248599	SLEAR	-	STAT1 regulated ILF2 complex interacting lncRNA	ncRNA
239467	chrY	56726721	56727350	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-227220	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
165027	chr3	71402801	71403400	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	-98329	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
218164	chr8	41945151	41945750	+	0	NA	intron (NM_001305878, intron 12 of 13)	AluSx3|SINE|Alu	-48709	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
109469	chr19	803121	803480	+	0	NA	intron (NM_031991, intron 2 of 13)	intron (NM_031991, intron 2 of 13)	-1640	NR_039900	100616459		NR_039900	ENSG00000284361	MIR4745	mir-4745	microRNA 4745	ncRNA
91375	chr17	4556751	4557050	+	0	NA	TTS (NM_001122890)	TTS (NM_001122890)	-1514	NM_001105538	10514		NM_014520	ENSG00000132382	MYBBP1A	P160|PAP2|Pol5	MYB binding protein 1a	protein-coding
13132	chr1	111653571	111654180	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-10919	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
120156	chr19	42233201	42233400	+	0	NA	exon (NM_019884, exon 7 of 11)	exon (NM_019884, exon 7 of 11)	9302	NM_019884	2931		NM_019884	ENSG00000105723	GSK3A	-	glycogen synthase kinase 3 alpha	protein-coding
5184	chr1	24947221	24948030	+	0	NA	intron (NM_001031680, intron 1 of 5)	intron (NM_001031680, intron 1 of 5)	-17349	NM_004350	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
15599	chr1	150596371	150596530	+	0	NA	Intergenic	L2|LINE|L2	-16712	NM_182763	4170		NM_021960	ENSG00000143384	MCL1	BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT	MCL1 apoptosis regulator, BCL2 family member	protein-coding
11591	chr1	91561351	91561650	+	0	NA	Intergenic	Intergenic	60392	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
196721	chr6	45084221	45084680	+	0	NA	intron (NM_001350327, intron 2 of 9)	L1PA16|LINE|L1	113320	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
115818	chr19	16462851	16463250	+	0	NA	intron (NM_021235, intron 1 of 22)	intron (NM_021235, intron 1 of 22)	8920	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
155898	chr22	39534421	39535630	+	0	NA	Intergenic	CpG	-2277	NM_194326	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
44715	chr11	111604451	111605050	+	0	NA	intron (NM_015191, intron 1 of 14)	intron (NM_015191, intron 1 of 14)	2301	NM_015191	23235		NM_015191	ENSG00000170145	SIK2	LOH11CR1I|QIK|SIK-2|SNF1LK2	salt inducible kinase 2	protein-coding
93826	chr17	20842101	20842700	+	0	NA	Intergenic	Intergenic	-26127	NR_160710	440416		NR_104185	ENSG00000233098	CCDC144NL-AS1	-	CCDC144NL antisense RNA 1	ncRNA
57414	chr12	121836771	121836930	+	0	NA	Intergenic	Intergenic	22009	NM_002150	3242		NM_002150	ENSG00000158104	HPD	4-HPPD|4HPPD|GLOD3|HPPD|HPPDASE|PPD	4-hydroxyphenylpyruvate dioxygenase	protein-coding
105452	chr17	82985471	82986530	+	0	NA	intron (NR_135465, intron 6 of 13)	intron (NR_135465, intron 6 of 13)	20988	NR_135466	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
216390	chr8	17927471	17927630	+	0	NA	intron (NR_148032, intron 2 of 38)	intron (NR_148032, intron 2 of 38)	4562	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
171855	chr4	725201	726000	+	0	NA	intron (NM_001317836, intron 1 of 11)	intron (NM_001317836, intron 1 of 11)	19768	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
234134	chrX	9997321	9997880	+	0	NA	Intergenic	LTR40A1|LTR|ERVL	-17654	NM_015691	55841		NM_015691	ENSG00000047644	WWC3	BM042	WWC family member 3	protein-coding
207533	chr7	44818321	44819000	+	0	NA	Intergenic	AluSz6|SINE|Alu	21979	NM_021130	5478		NM_021130	ENSG00000196262	PPIA	CYPA|CYPH|HEL-S-69p	peptidylprolyl isomerase A	protein-coding
62694	chr13	102775221	102775480	+	0	NA	Intergenic	MER41B|LTR|ERV1	-1564	NM_001286775	93081		NM_138779	ENSG00000151287	TEX30	C13orf27	testis expressed 30	protein-coding
44674	chr11	110522271	110522850	+	0	NA	Intergenic	Intergenic	92612	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
108285	chr18	63310971	63311130	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	8719	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
9896	chr1	54374221	54374480	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	32044	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
111803	chr19	4456321	4456580	+	0	NA	intron (NM_025241, intron 1 of 10)	intron (NM_025241, intron 1 of 10)	-1149	NM_001171091	80700		NM_025241	ENSG00000167671	UBXN6	UBXD1|UBXDC2	UBX domain protein 6	protein-coding
59346	chr13	24600351	24600730	+	0	NA	Intergenic	L1PA16|LINE|L1	20332	NR_002815	374491		NR_002815		TPTE2P6	-	TPTE2 pseudogene 6	pseudo
142572	chr20	5402971	5403150	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	42688	NR_038239	100507629		NR_038239	ENSG00000226995	LINC00658	-	long intergenic non-protein coding RNA 658	ncRNA
54753	chr12	93967471	93967630	+	0	NA	Intergenic	Intergenic	-23944	NR_135017	105369911		NR_135017	ENSG00000257283	LOC105369911	-	uncharacterized LOC105369911	ncRNA
232852	chr9	136788671	136788830	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-2594	NM_032928	85014		NM_032928	ENSG00000244187	TMEM141	-	transmembrane protein 141	protein-coding
82034	chr16	12082221	12082880	+	0	NA	intron (NM_032167, intron 11 of 20)	intron (NM_032167, intron 11 of 20)	105816	NM_032167	92017		NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
175723	chr4	77587851	77587950	+	0	NA	intron (NM_006419, intron 1 of 4)	intron (NM_006419, intron 1 of 4)	-17920	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
144338	chr20	34992021	34992550	+	0	NA	intron (NM_020884, intron 24 of 44)	AluY|SINE|Alu	-1813	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
123830	chr19	55220571	55221050	+	0	NA	Intergenic	Intergenic	7953	NM_001372013	255043		NM_173804	ENSG00000180089	TMEM86B	-	transmembrane protein 86B	protein-coding
17840	chr1	159913701	159914180	+	0	NA	Intergenic	Intergenic	9794	NM_001277224	8407		NM_003564	ENSG00000158710	TAGLN2	HA1756	transgelin 2	protein-coding
165249	chr3	73043601	73043900	+	0	NA	intron (NM_001318025, intron 2 of 7)	L1M4|LINE|L1	-17909	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
101215	chr17	65563521	65564330	+	0	NA	Intergenic	Intergenic	-2277	NM_004655	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
14316	chr1	143869351	143869650	+	0	NA	intron (NR_160915, intron 1 of 1)	LTR56|LTR|ERV1	-5243	NR_027484	100132417		NM_001128589	ENSG00000265531	FCGR1CP	CD64c|FCGR1C|FCRIC|IGFR1|IGFRC	Fc gamma receptor Ic, pseudogene	pseudo
172914	chr4	3497371	3498300	+	0	NA	intron (NM_001301071, intron 8 of 9)	intron (NM_001301071, intron 8 of 9)	13291	NM_001256896	285489		NM_173660	ENSG00000175920	DOK7	C4orf25|CMS10|CMS1B|FADS3	docking protein 7	protein-coding
187822	chr5	146794301	146794850	+	0	NA	intron (NM_001271899, intron 2 of 9)	intron (NM_001271899, intron 2 of 9)	84182	NR_073526	5521		NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding
86127	chr16	57679571	57679930	+	0	NA	intron (NM_170776, intron 5 of 11)	intron (NM_170776, intron 5 of 11)	11444	NM_001308360	222487		NM_170776	ENSG00000182885	ADGRG3	GPR97|PB99|PGR26	adhesion G protein-coupled receptor G3	protein-coding
40199	chr11	62975101	62975400	+	0	NA	Intergenic	Intergenic	9717	NM_004790	9356		NM_004790	ENSG00000197901	SLC22A6	HOAT1|OAT1|PAHT|ROAT1	solute carrier family 22 member 6	protein-coding
218505	chr8	52782901	52784130	+	0	NA	Intergenic	LTR43B|LTR|ERV1	-69049	NM_001083617	9821		NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
23822	chr1	234495221	234495630	+	0	NA	Intergenic	Intergenic	-16246	NM_005646	6894		NM_005646	ENSG00000059588	TARBP1	TRM3|TRMT3|TRP-185|TRP185	TAR (HIV-1) RNA binding protein 1	protein-coding
171961	chr4	901001	901600	+	0	NA	intron (NM_001318134, intron 2 of 24)	intron (NM_001318134, intron 2 of 24)	31016	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
42441	chr11	69300301	69300600	+	0	NA	Intergenic	Intergenic	6295	NM_001293296	26579		NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding
61496	chr13	52619471	52620030	+	0	NA	intron (NM_001011725, intron 1 of 5)	AluY|SINE|Alu	2225	NM_001011725	144983		NM_001011724	ENSG00000139675	HNRNPA1L2	-	heterogeneous nuclear ribonucleoprotein A1 like 2	protein-coding
23993	chr1	235232871	235233030	+	0	NA	intron (NM_016374, intron 9 of 23)	AluSq2|SINE|Alu	-42834	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
82817	chr16	21486021	21486700	+	0	NA	intron (NR_027155, intron 1 of 28)	intron (NR_027155, intron 1 of 28)	-15166	NR_027460	100131998		NR_027460	ENSG00000290865	RRN3P3	-	RRN3 pseudogene 3	pseudo
11262	chr1	89046651	89047050	+	0	NA	Intergenic	L2|LINE|L2	18358	NM_002053	2633		NM_002053	ENSG00000117228	GBP1	hGBP1	guanylate binding protein 1	protein-coding
180599	chr5	16160771	16160930	+	0	NA	intron (NM_001102562, intron 2 of 3)	intron (NM_001102562, intron 2 of 3)	18941	NM_001102562	441061		NM_001102562	ENSG00000183654	MARCHF11	MARCH-XI|MARCH11|RNF226	membrane associated ring-CH-type finger 11	protein-coding
189283	chr5	172105871	172106030	+	0	NA	intron (NM_005990, intron 6 of 18)	MIR1_Amn|SINE|MIR	82274	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
31621	chr10	97378971	97379880	+	0	NA	intron (NM_015179, intron 14 of 33)	intron (NM_015179, intron 14 of 33)	21915	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
35629	chr11	1830271	1830930	+	0	NA	Intergenic	Intergenic	-3827	NM_138567	90019		NM_138567	ENSG00000149043	SYT8	-	synaptotagmin 8	protein-coding
175624	chr4	76177021	76177400	+	0	NA	intron (NM_005506, intron 4 of 11)	L1MB7|LINE|L1	-28695	NR_103780	53371		NM_017426	ENSG00000138750	NUP54	DYT37	nucleoporin 54	protein-coding
142465	chr20	4091671	4092100	+	0	NA	Intergenic	Intergenic	-56894	NM_001270691	54498		NM_019025	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
112715	chr19	7192051	7194000	+	0	NA	intron (NM_001079817, intron 2 of 20)	intron (NM_001079817, intron 2 of 20)	101389	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
25514	chr10	7260351	7260830	+	0	NA	intron (NM_001029880, intron 7 of 20)	MLT1L|LTR|ERVL-MaLR	-73806	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
152795	chr22	21832451	21833100	+	0	NA	intron (NM_138957, intron 1 of 7)	intron (NM_138957, intron 1 of 7)	34870	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
189912	chr5	177365571	177365730	+	0	NA	intron (NM_006480, intron 1 of 14)	MIRc|SINE|MIR	7726	NM_001366618	10636		NM_006480	ENSG00000169220	RGS14	-	regulator of G protein signaling 14	protein-coding
153544	chr22	26588171	26588630	+	0	NA	intron (NM_001362923, intron 1 of 7)	L1MB7|LINE|L1	1732	NM_003595	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
46536	chr11	128464051	128464430	+	0	NA	intron (NM_001330451, intron 5 of 6)	intron (NM_001330451, intron 5 of 6)	58070	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
76837	chr15	77440471	77440780	+	0	NA	intron (NM_001304505, intron 1 of 9)	MLT1I|LTR|ERVL-MaLR	19737	NM_001304504	10363		NM_018200	ENSG00000140382	HMG20A	HMGX1|HMGXB1	high mobility group 20A	protein-coding
83988	chr16	29402401	29402780	+	0	NA	intron (NM_001310137, intron 2 of 7)	AluSx4|SINE|Alu	1955	NM_001310137	728888		NM_001310137	ENSG00000254206	NPIPB11	NPIP	nuclear pore complex interacting protein family member B11	protein-coding
193787	chr6	31399101	31400100	+	0	NA	intron (NR_148222, intron 1 of 1)	intron (NR_148222, intron 1 of 1)	870	NR_148222	101929072		NR_148222		MICA-AS1	-	MICA antisense RNA 1	ncRNA
211306	chr7	103342351	103342930	+	0	NA	intron (NM_001362668, intron 1 of 17)	AluY|SINE|Alu	2127	NM_014377	27000		NM_014377	ENSG00000105821	DNAJC2	MPHOSPH11|MPP11|ZRF1|ZUO1	DnaJ heat shock protein family (Hsp40) member C2	protein-coding
17910	chr1	160205021	160206680	+	0	NA	non-coding (NR_123725, exon 3 of 5)	non-coding (NR_123725, exon 3 of 5)	466	NM_003768	8682		NM_003768	ENSG00000162734	PEA15	HMAT1|HUMMAT1H|MAT1|MAT1H|PEA-15|PED|PED-PEA15|PED/PEA15	proliferation and apoptosis adaptor protein 15	protein-coding
160853	chr3	33111671	33111830	+	0	NA	Intergenic	L1MC1|LINE|L1	-2264	NM_006371	10491		NM_006371	ENSG00000170275	CRTAP	CASP|LEPREL3|OI7|P3H5	cartilage associated protein	protein-coding
9003	chr1	44714671	44716050	+	0	NA	intron (NM_001145636, intron 6 of 11)	MIR3|SINE|MIR	6541	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
138809	chr2	216174821	216175080	+	0	NA	intron (NM_021141, intron 16 of 20)	intron (NM_021141, intron 16 of 20)	-41939	NR_037701	150967		NM_001199924	ENSG00000260804	LINC01963	PKI55	long intergenic non-protein coding RNA 1963	ncRNA
146533	chr20	49947571	49947730	+	0	NA	intron (NM_018683, intron 4 of 5)	intron (NM_018683, intron 4 of 5)	11253	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
71610	chr14	106661701	106662250	+	0	NA	Intergenic	Intergenic	179536	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
208807	chr7	73625501	73626050	+	0	NA	Intergenic	AluSz|SINE|Alu	-1253	NM_032952	51085		NM_032951	ENSG00000009950	MLXIPL	CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14	MLX interacting protein like	protein-coding
47043	chr12	461701	462300	+	0	NA	intron (NM_173593, intron 1 of 19)	L3|LINE|CR1	2061	NM_173593	283358		NM_173593	ENSG00000139044	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein-coding
163567	chr3	51933371	51933730	+	0	NA	exon (NM_004704, exon 15 of 15)	exon (NM_004704, exon 15 of 15)	8354	NM_004704	9136		NM_004704	ENSG00000114767	RRP9	RNU3IP2|U3-55K	ribosomal RNA processing 9, U3 small nucleolar RNA binding protein	protein-coding
99090	chr17	49004751	49004850	+	0	NA	intron (NM_001160423, intron 2 of 12)	intron (NM_001160423, intron 2 of 12)	7415	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
104422	chr17	81068051	81068150	+	0	NA	intron (NM_001385147, intron 2 of 12)	intron (NM_001385147, intron 2 of 12)	10366	NM_001385149	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
149730	chr21	34340621	34340880	+	0	NA	Intergenic	L1MB5|LINE|L1	-23256	NM_172201	9992		NM_005136	ENSG00000159197	KCNE2	ATFB4|LQT5|LQT6|MIRP1	potassium voltage-gated channel subfamily E regulatory subunit 2	protein-coding
114705	chr19	13148721	13148980	+	0	NA	intron (NM_003765, intron 4 of 7)	intron (NM_003765, intron 4 of 7)	1525	NM_003765	8677		NM_003765	ENSG00000104915	STX10	SYN10|hsyn10	syntaxin 10	protein-coding
11802	chr1	92749001	92749240	+	0	NA	intron (NM_005665, intron 1 of 17)	intron (NM_005665, intron 1 of 17)	35988	NM_001377210	7813		NM_005665	ENSG00000067208	EVI5	EVI-5|NB4S	ecotropic viral integration site 5	protein-coding
26797	chr10	23362851	23364350	+	0	NA	Intergenic	AluJb|SINE|Alu	-18803	NM_153714	256815		NM_153714	ENSG00000179133	C10orf67	C10orf115|LINC01552	chromosome 10 open reading frame 67	protein-coding
2529	chr1	9718651	9718750	+	0	NA	exon (NM_005026, exon 9 of 24)	exon (NM_005026, exon 9 of 24)	27233	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
133441	chr2	119407801	119408000	+	0	NA	Intergenic	Intergenic	-23954	NM_183240	140738		NM_183240	ENSG00000171227	TMEM37	PR|PR1	transmembrane protein 37	protein-coding
42240	chr11	68112971	68113130	+	0	NA	intron (NM_212469, intron 1 of 10)	AluY|SINE|Alu	8338	NM_001376222	1119		NM_001277	ENSG00000110721	CHKA	CHK|CK|CKI|EK|NEDMIMS	choline kinase alpha	protein-coding
159731	chr3	15802151	15802250	+	0	NA	intron (NM_015199, intron 1 of 27)	MLT1J|LTR|ERVL-MaLR	-4016	NR_146111	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
83239	chr16	23859221	23859730	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	23492	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
174753	chr4	47031121	47031380	+	0	NA	promoter-TSS (NM_000812)	promoter-TSS (NM_000812)	-317	NM_000812	2560		NM_000812	ENSG00000163288	GABRB1	DEE45|EIEE45	gamma-aminobutyric acid type A receptor subunit beta1	protein-coding
107311	chr18	44895271	44895500	+	0	NA	intron (NM_001379141, intron 3 of 5)	intron (NM_001379141, intron 3 of 5)	74781	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
214137	chr7	144331371	144332000	+	0	NA	intron (NR_126023, intron 2 of 4).2	intron (NR_126023, intron 2 of 4).2	13560	NM_001001802	402317		NM_001001802	ENSG00000212807	OR2A42	-	olfactory receptor family 2 subfamily A member 42	protein-coding
45363	chr11	118260401	118261150	+	0	NA	intron (NM_005797, intron 3 of 5)	L2c|LINE|L2	3522	NM_005797	10205		NM_005797	ENSG00000149573	MPZL2	DFNB111|EVA|EVA1	myelin protein zero like 2	protein-coding
30307	chr10	75294701	75296030	+	0	NA	intron (NR_120651, intron 1 of 3)	intron (NR_120651, intron 1 of 3)	-1018	NR_038224	253264		NR_038223	ENSG00000226051	ZNF503-AS1	-	ZNF503 antisense RNA 1	ncRNA
173233	chr4	6920821	6921450	+	0	NA	intron (NM_020773, intron 1 of 13)	intron (NM_020773, intron 1 of 13)	11309	NM_020773	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
99065	chr17	48942051	48942150	+	0	NA	intron (NM_001317193, intron 1 of 6)	intron (NM_001317193, intron 1 of 6)	2742	NR_133679	11267		NM_007241	ENSG00000159210	SNF8	DEE115|Dot3|EAP30|NEDOA|VPS22	SNF8 subunit of ESCRT-II	protein-coding
51497	chr12	52118371	52118930	+	0	NA	Intergenic	L2|LINE|L2	25081	NR_120440	26628		NR_120438	ENSG00000290965	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo
141068	chr2	238264801	238265000	+	0	NA	intron (NM_022817, intron 9 of 22)	AluJr|SINE|Alu	23710	NM_022817	8864		NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian regulator 2	protein-coding
5191	chr1	24952401	24953330	+	0	NA	intron (NM_001031680, intron 1 of 5)	MIRb|SINE|MIR	12145	NM_001320672	864		NM_004350	ENSG00000020633	RUNX3	AML2|CBFA3|PEBP2aC	RUNX family transcription factor 3	protein-coding
591	chr1	1289321	1289580	+	0	NA	intron (NM_001130413, intron 12 of 17)	CpG-77	6720	NR_106784	102465434		NR_106784	ENSG00000278073	MIR6726	hsa-mir-6726	microRNA 6726	ncRNA
39899	chr11	62506421	62507230	+	0	NA	intron (NM_024060, intron 4 of 5)	intron (NM_024060, intron 4 of 5)	38839	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
163710	chr3	52283221	52283480	+	0	NA	Intergenic	Intergenic	-4470	NM_001144951	132158		NM_145262	ENSG00000168237	GLYCTK	HBEBP2|HBEBP4|HBeAgBP4A	glycerate kinase	protein-coding
77167	chr15	80058771	80060750	+	0	NA	promoter-TSS (NM_001242914)	promoter-TSS (NM_001242914)	84	NM_019006	54469		NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding
9493	chr1	51239621	51240330	+	0	NA	intron (NM_014372, intron 1 of 2)	intron (NM_014372, intron 1 of 2)	3702	NM_014372	26994		NM_014372	ENSG00000123091	RNF11	CGI-123|SID1669	ring finger protein 11	protein-coding
100730	chr17	63898771	63898930	+	0	NA	Intergenic	Intergenic	-2276	NM_001317	1442		NM_001317	ENSG00000136488	CSH1	CS-1|CSA|CSMT|GHB3|PL|hCS-1|hCS-A	chorionic somatomammotropin hormone 1	protein-coding
174904	chr4	49096771	49097280	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	110383	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
176845	chr4	102588671	102589050	+	0	NA	intron (NM_001382625, intron 12 of 24)	MIRc|SINE|MIR	-86374	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
69347	chr14	93962701	93964280	+	0	NA	intron (NM_001202429, intron 2 of 9)	intron (NM_001202429, intron 2 of 9)	-6443	NM_016150	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
176370	chr4	88589021	88589280	+	0	NA	intron (NM_001375482, intron 1 of 24)	AluJr|SINE|Alu	-3330	NM_001375478	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
235460	chrX	46573201	46573800	+	0	NA	promoter-TSS (NM_019886)	promoter-TSS (NM_019886)	-265	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
62195	chr13	97800371	97800530	+	0	NA	Intergenic	Intergenic	-153225	NM_002271	3843		NM_002271	ENSG00000065150	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding
184638	chr5	107430251	107430550	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	240537	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
44175	chr11	96242821	96244000	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-98028	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
143192	chr20	24858451	24858750	+	0	NA	Intergenic	LTR12_|LTR|ERV1	-90669	NM_003650	8530		NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding
169020	chr3	152450321	152450730	+	0	NA	intron (NM_001376833, intron 7 of 8)	MER102a|DNA|hAT-Charlie	-109535	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
235791	chrX	49168451	49168550	+	0	NA	TTS (NM_001099681)	TTS (NM_001099681)	-3398	NM_002668	5355		NM_002668	ENSG00000102007	PLP2	A4|A4LSB	proteolipid protein 2	protein-coding
155962	chr22	39808151	39808250	+	0	NA	intron (NM_152512, intron 5 of 6)	L2b|LINE|L2	85560	NM_152512	150350		NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
82947	chr16	21867021	21867680	+	0	NA	promoter-TSS (NR_024456).3	promoter-TSS (NR_024456).3	-615	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
68072	chr14	75267001	75267200	+	0	NA	Intergenic	Intergenic	-11728	NM_005252	2353		NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding
226276	chr9	68307121	68307780	+	0	NA	Intergenic	CpG	4583	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
3887	chr1	17017671	17018030	+	0	NA	TTS (NM_003000)	TTS (NM_003000)	-5922	NM_001141973	23400		NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9|SPG78	ATPase cation transporting 13A2	protein-coding
62408	chr13	99289451	99290230	+	0	NA	intron (NR_026644, intron 4 of 8)	MLT1I|LTR|ERVL-MaLR	17559	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
174654	chr4	40841001	40841250	+	0	NA	intron (NM_001166051, intron 1 of 6)	intron (NM_001166051, intron 1 of 6)	16030	NM_001166051	323		NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding
193619	chr6	30746171	30746930	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-2003	NM_003897	8870		NM_003897	ENSG00000137331	IER3	DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1	immediate early response 3	protein-coding
143049	chr20	21325751	21325850	+	0	NA	intron (NM_001317960, intron 1 of 29)	L2|LINE|L2	22302	NM_001317960	22803		NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
102860	chr17	76497201	76497780	+	0	NA	intron (NR_164786, intron 1 of 19)	intron (NR_164786, intron 1 of 19)	3933	NM_001376229	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
62160	chr13	97226781	97228230	+	0	NA	intron (NM_001382682, intron 1 of 7)	MIRc|SINE|MIR	5172	NM_001382680	10150		NM_005757	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
76014	chr15	71743971	71744280	+	0	NA	intron (NM_024817, intron 10 of 16)	intron (NM_024817, intron 10 of 16)	-52586	NR_120346	101929173		NR_120346		THSD4-AS2	-	THSD4 antisense RNA 2	ncRNA
196677	chr6	44630201	44630650	+	0	NA	Intergenic	Intergenic	-78544	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
65052	chr14	39266471	39267990	+	0	NA	promoter-TSS (NM_001354157)	promoter-TSS (NM_001354157)	106	NM_001354138	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
7353	chr1	32772351	32772450	+	0	NA	exon (NM_001198972, exon 6 of 7)	exon (NM_001198972, exon 6 of 7)	6773	NM_001198972	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
191910	chr6	15432171	15432330	+	0	NA	intron (NM_001267040, intron 3 of 17)	AluSz|SINE|Alu	183395	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
232956	chr9	136951771	136952750	+	0	NA	promoter-TSS (NM_178536)	promoter-TSS (NM_178536)	-13	NM_178536	286256		NM_178536	ENSG00000184925	LCN12	-	lipocalin 12	protein-coding
85161	chr16	46623151	46624130	+	0	NA	Intergenic	Intergenic	-2261	NM_001324318	79801		NM_024745	ENSG00000171241	SHCBP1	PAL	SHC binding and spindle associated 1	protein-coding
81169	chr16	4458351	4458650	+	0	NA	Intergenic	AluJo|SINE|Alu	16125	NM_001305141	57407		NM_020677	ENSG00000153406	NMRAL1	HSCARG|SDR48A1	NmrA like redox sensor 1	protein-coding
157407	chr22	44972371	44972530	+	0	NA	intron (NM_001284296, intron 2 of 13)	intron (NM_001284296, intron 2 of 13)	31169	NR_147506	101927551		NR_147506	ENSG00000230922	LOC101927551	-	uncharacterized LOC101927551	ncRNA
200714	chr6	137496271	137496830	+	0	NA	Intergenic	Intergenic	-2156	NM_175747	167826		NM_175747	ENSG00000177468	OLIG3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
78100	chr15	90267851	90269500	+	0	NA	intron (NR_028052, intron 1 of 1)	L2|LINE|L2	-2916	NR_102428	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
159959	chr3	17412921	17413280	+	0	NA	intron (NM_001349090, intron 4 of 21)	intron (NM_001349090, intron 4 of 21)	286920	NM_001134381	9779		NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding
176527	chr4	95915171	95915530	+	0	NA	Intergenic	L1PA2|LINE|L1	75257	NM_005390	5161		NM_005390	ENSG00000163114	PDHA2	PDHAL|SPGF70	pyruvate dehydrogenase E1 subunit alpha 2	protein-coding
3585	chr1	16215871	16216600	+	0	NA	Intergenic	Intergenic	-3583	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
187926	chr5	148857351	148858150	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	31139	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
78468	chr15	92891551	92892130	+	0	NA	intron (NR_037600, intron 3 of 4)	intron (NR_037600, intron 3 of 4)	-8484	NM_001271	1106		NM_001271	ENSG00000173575	CHD2	DEE94|EEOC	chromodomain helicase DNA binding protein 2	protein-coding
132100	chr2	101341401	101341700	+	0	NA	Intergenic	LTR33A|LTR|ERVL	32100	NR_049881	100847007		NR_049881	ENSG00000264857	MIR5696	-	microRNA 5696	ncRNA
86975	chr16	68159351	68159650	+	0	NA	intron (NM_173165, intron 4 of 9)	AluY|SINE|Alu	73999	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
143343	chr20	25854971	25855130	+	0	NA	Intergenic	SST1|Satellite|centr	-1029	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
85868	chr16	57038201	57038400	+	0	NA	intron (NM_001384955, intron 15 of 47)	AluJo|SINE|Alu	48743	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
50961	chr12	49545051	49545830	+	0	NA	intron (NM_001314030, intron 7 of 14)	AluY|SINE|Alu	6410	NM_012284	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
18247	chr1	161053851	161054480	+	0	NA	intron (NM_001287602, intron 1 of 7)	intron (NM_001287602, intron 1 of 7)	-8188	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
198980	chr6	110897601	110897800	+	0	NA	Intergenic	AluSx|SINE|Alu	22916	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
232606	chr9	136431301	136431880	+	0	NA	intron (NM_001318502, intron 7 of 9)	intron (NM_001318502, intron 7 of 9)	8255	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
65544	chr14	51927301	51927700	+	0	NA	intron (NM_053064, intron 2 of 3)	L2c|LINE|L2	-8929	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
229746	chr9	125145801	125146200	+	0	NA	TTS (NM_002721)	TTS (NM_002721)	-2472	NM_001144877	286205		NM_173690	ENSG00000173611	SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
79152	chr16	272551	273000	+	0	NA	intron (NM_001286486, intron 7 of 14)	intron (NM_001286486, intron 7 of 14)	3169	NM_183337	8786		NM_003834	ENSG00000076344	RGS11	RS11	regulator of G protein signaling 11	protein-coding
130783	chr2	86847771	86848450	+	0	NA	intron (NM_172213, intron 3 of 5)	L1ME3G|LINE|L1	-13715	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
210261	chr7	99401051	99401150	+	0	NA	intron (NM_014891, intron 3 of 5)	intron (NM_014891, intron 3 of 5)	7497	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
12649	chr1	109251021	109252600	+	0	NA	exon (NM_001408, exon 1 of 34)	exon (NM_001408, exon 1 of 34)	2271	NM_001408	1952		NM_001408	ENSG00000143126	CELSR2	ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3	cadherin EGF LAG seven-pass G-type receptor 2	protein-coding
159609	chr3	15256801	15257230	+	0	NA	exon (NM_001018009, exon 8 of 9)	exon (NM_001018009, exon 8 of 9)	2831	NR_046084	100505696		NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
216489	chr8	20193001	20193400	+	0	NA	Intergenic	MER57A1|LTR|ERV1	-4181	NM_001693	526		NM_001693	ENSG00000147416	ATP6V1B2	ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2	ATPase H+ transporting V1 subunit B2	protein-coding
207281	chr7	43987721	43988500	+	0	NA	non-coding (NR_003655, exon 5 of 16)	non-coding (NR_003655, exon 5 of 16)	-9758	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
118206	chr19	35145001	35146080	+	0	NA	intron (NM_022006, intron 1 of 5)	intron (NM_022006, intron 1 of 5)	2285	NM_022006	53822		NM_022006	ENSG00000221946	FXYD7	-	FXYD domain containing ion transport regulator 7	protein-coding
110552	chr19	2102871	2103030	+	0	NA	intron (NM_001374799, intron 31 of 31)	AluSq|SINE|Alu	6035	NM_001031735	113177		NM_052878	ENSG00000099840	IZUMO4	C19orf36|IMAGE:4215339	IZUMO family member 4	protein-coding
143227	chr20	24979121	24979400	+	0	NA	intron (NM_020531, intron 2 of 8)	intron (NM_020531, intron 2 of 8)	13491	NM_020531	57136		NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding
30936	chr10	87311521	87311850	+	0	NA	intron (NR_024397, intron 3 of 5)	LTR16A|LTR|ERVL	-30726	NR_029408	439994		NR_029408	ENSG00000224914	LINC00863	-	long intergenic non-protein coding RNA 863	ncRNA
189531	chr5	173886571	173886730	+	0	NA	Intergenic	Intergenic	-1699	NM_001308189	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
161987	chr3	46358771	46358930	+	0	NA	3' UTR (NM_001123396, exon 2 of 2)	3' UTR (NM_001123396, exon 2 of 2)	4739	NM_001123396	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
201516	chr6	149084201	149084400	+	0	NA	Intergenic	Intergenic	-51639	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
238167	chrX	136860101	136860500	+	0	NA	Intergenic	AluSz|SINE|Alu	18971	NR_002735	26787		NR_002735	ENSG00000206979	SNORD61	HBII-342|RNU61|U61	small nucleolar RNA, C/D box 61	snoRNA
10264	chr1	64527151	64527450	+	0	NA	intron (NM_001293274, intron 1 of 25)	intron (NM_001293274, intron 1 of 25)	21386	NM_001293274	57685		NM_020925	ENSG00000158966	CACHD1	-	cache domain containing 1	protein-coding
219464	chr8	73292771	73296050	+	0	NA	promoter-TSS (NM_001363737)	promoter-TSS (NM_001363737)	56	NM_001363737	6129		NM_000971	ENSG00000147604	RPL7	L7|humL7-1|uL30	ribosomal protein L7	protein-coding
108169	chr18	62874751	62874850	+	0	NA	intron (NM_194449, intron 4 of 16)	MER6A|DNA|TcMar-Tigger	159259	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
189816	chr5	176996951	176997250	+	0	NA	intron (NR_146149, intron 1 of 15)	intron (NR_146149, intron 1 of 15)	9342	NM_016290	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
200613	chr6	136764121	136765650	+	0	NA	intron (NM_005923, intron 1 of 29)	MIRc|SINE|MIR	-19162	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
201831	chr6	150059901	150060480	+	0	NA	TTS (NM_024518)	TTS (NM_024518)	8931	NM_024518	79465		NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
183175	chr5	75363821	75364280	+	0	NA	Intergenic	Intergenic	26830	NM_000859	3156		NM_000859	ENSG00000113161	HMGCR	LDLCQ3|LGMDR28|MYPLG	3-hydroxy-3-methylglutaryl-CoA reductase	protein-coding
199324	chr6	113630101	113630580	+	0	NA	intron (NR_125844, intron 1 of 2)	intron (NR_125844, intron 1 of 2)	19735	NR_125844	101927686		NR_125844	ENSG00000230943	LINC02541	-	long intergenic non-protein coding RNA 2541	ncRNA
54061	chr12	76024771	76025130	+	0	NA	TTS (NM_007350)	TTS (NM_007350)	6826	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
84421	chr16	30372351	30373050	+	0	NA	intron (NM_001324458, intron 1 of 8)	L2b|LINE|L2	406	NM_001324458	29895		NM_013292	ENSG00000180209	MYL11	DA1C|HUMMLC2B|MLC2B|MRLC2|MYLPF	myosin light chain 11	protein-coding
208586	chr7	72922701	72923750	+	0	NA	intron (NM_001257190, intron 4 of 15)	intron (NM_001257190, intron 4 of 15)	31538	NR_033323	260294		NM_148936	ENSG00000290831	NSUN5P2	NOL1R2|NSUN5C|WBSCR20B|WBSCR20C	NSUN5 pseudogene 2	pseudo
164057	chr3	53843771	53843930	+	0	NA	intron (NM_018397, intron 1 of 8)	MIR1_Amn|SINE|MIR	2569	NM_018397	55349		NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding
117501	chr19	19900401	19901900	+	0	NA	intron (NM_031218, intron 1 of 3)	CpG	204	NM_031218	81931		NM_031218	ENSG00000184635	ZNF93	HPF34|HTF34|TF34|ZNF505	zinc finger protein 93	protein-coding
168917	chr3	152343201	152343630	+	0	NA	intron (NM_001376837, intron 2 of 9)	L2c|LINE|L2	-2425	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
207000	chr7	38347801	38348200	+	0	NA	intron (NR_040085, intron 2 of 3)	AluSz|SINE|Alu	6423	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
127554	chr2	42345401	42345700	+	0	NA	intron (NM_001319038, intron 2 of 2)	Charlie2a|DNA|hAT-Charlie	14488	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
59004	chr13	20136771	20137380	+	0	NA	Intergenic	CpG	23977	NM_021954	2700		NM_021954	ENSG00000121743	GJA3	CTRCT14|CX46|CZP3	gap junction protein alpha 3	protein-coding
130684	chr2	86488601	86489000	+	0	NA	intron (NM_001146688, intron 21 of 25)	intron (NM_001146688, intron 21 of 25)	47339	NM_001146688	55818		NM_018433	ENSG00000115548	KDM3A	JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA	lysine demethylase 3A	protein-coding
88013	chr16	81004121	81005180	+	0	NA	intron (NR_147838, intron 1 of 5)	intron (NR_147838, intron 1 of 5)	-1848	NM_001270473	55839		NM_018455	ENSG00000166451	CENPN	BM039|C16orf60|CENP-N|ICEN32	centromere protein N	protein-coding
141096	chr2	238405601	238406600	+	0	NA	Intergenic	Intergenic	-20827	NM_001040445	51665		NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding
34036	chr10	124727151	124727650	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	16978	NM_014661	9679		NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding
58540	chr12	132239871	132240350	+	0	NA	intron (NM_001122636, intron 6 of 10)	intron (NM_001122636, intron 6 of 10)	-34082	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
29259	chr10	69123071	69125630	+	0	NA	intron (NM_001318946, intron 1 of 7)	CpG	172	NM_001318944	9559		NM_004896	ENSG00000122958	VPS26A	HB58|Hbeta58|PEP8A|VPS26	VPS26 retromer complex component A	protein-coding
218511	chr8	52939401	52940530	+	0	NA	exon (NM_005285, exon 2 of 2)	exon (NM_005285, exon 2 of 2)	783	NM_005285	2831		NM_005285	ENSG00000288611	NPBWR1	GPR7	neuropeptides B and W receptor 1	protein-coding
100398	chr17	60355021	60355450	+	0	NA	intron (NM_032582, intron 1 of 33)	L1ME2|LINE|L1	36898	NM_032582	84669		NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding
104950	chr17	81955871	81956030	+	0	NA	intron (NM_178493, intron 8 of 10)	intron (NM_178493, intron 8 of 10)	5237	NM_178493	147111		NM_178493	ENSG00000185269	NOTUM	hNOTUM	notum, palmitoleoyl-protein carboxylesterase	protein-coding
143076	chr20	21529921	21530180	+	0	NA	Intergenic	Intergenic	-15986	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
67711	chr14	73455201	73455480	+	0	NA	intron (NM_003744, intron 1 of 11)	intron (NM_003744, intron 1 of 11)	3240	NM_003744	8650		NM_003744	ENSG00000133961	NUMB	C14orf41|S171|c14_5527	NUMB endocytic adaptor protein	protein-coding
108010	chr18	58753271	58753700	+	0	NA	3' UTR (NM_006785, exon 17 of 17)	3' UTR (NM_006785, exon 17 of 17)	-60395	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
81678	chr16	11114471	11115280	+	0	NA	intron (NM_001243403, intron 18 of 20)	intron (NM_001243403, intron 18 of 20)	141307	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
226249	chr9	67711471	67712030	+	0	NA	promoter-TSS (NR_121606).2	promoter-TSS (NR_121606).2	73	NR_121606	102723709		NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA
7883	chr1	36462271	36462930	+	0	NA	intron (NM_031280, intron 2 of 7)	intron (NM_031280, intron 2 of 7)	1784	NM_031280	64960		NM_031280	ENSG00000116898	MRPS15	DC37|MPR-S15|RPMS15|S15mt|uS15m	mitochondrial ribosomal protein S15	protein-coding
208978	chr7	74205521	74205930	+	0	NA	Intergenic	Intergenic	-4281	NM_032464	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
201337	chr6	144495351	144495450	+	0	NA	intron (NM_007124, intron 32 of 73)	LTR12C|LTR|ERV1	-87748	NM_001375323	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
20887	chr1	202146371	202146530	+	0	NA	TTS (NM_001199797)	TTS (NM_001199797)	-1707	NM_001256129	127829		NM_138795	ENSG00000143862	ARL8A	ARL10B|GIE2	ADP ribosylation factor like GTPase 8A	protein-coding
131339	chr2	96151421	96151680	+	0	NA	Intergenic	Intergenic	-6110	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
139944	chr2	230826001	230826200	+	0	NA	Intergenic	L1MC3|LINE|L1	-38085	NM_001287241	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
179177	chr4	173166601	173166930	+	0	NA	non-coding (NR_134242, exon 3 of 7)	non-coding (NR_134242, exon 3 of 7)	-2046	NM_001375599	51809		NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
181195	chr5	39148871	39149730	+	0	NA	intron (NM_199335, intron 3 of 17)	intron (NM_199335, intron 3 of 17)	70263	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
218836	chr8	59327671	59327830	+	0	NA	Intergenic	Intergenic	208540	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
2879	chr1	11522651	11522900	+	0	NA	intron (NM_020780, intron 10 of 20)	intron (NM_020780, intron 10 of 20)	43620	NM_020780	57540		NM_020780	ENSG00000204624	DISP3	PTCHD2	dispatched RND transporter family member 3	protein-coding
162102	chr3	46904571	46904730	+	0	NA	TTS (NM_000316)	TTS (NM_000316)	22401	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
145785	chr20	45374951	45375300	+	0	NA	exon (NM_014477, exon 4 of 5)	exon (NM_014477, exon 4 of 5)	3200	NM_014477	27296		NM_014477	ENSG00000124251	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
209242	chr7	75870521	75871150	+	0	NA	Intergenic	MIRc|SINE|MIR	-8157	NM_001346189	57414		NM_020684	ENSG00000005486	RHBDD2	NPD007|RHBDL7	rhomboid domain containing 2	protein-coding
104600	chr17	81407501	81407850	+	0	NA	intron (NM_001377448, intron 2 of 27)	intron (NM_001377448, intron 2 of 27)	-6897	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA
29779	chr10	72270451	72270550	+	0	NA	Intergenic	L2b|LINE|L2	-3424	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
39525	chr11	61087601	61087800	+	0	NA	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	-6263	NM_001346456	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
25353	chr10	6350171	6350530	+	0	NA	promoter-TSS (NR_148966)	promoter-TSS (NR_148966)	34	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
155134	chr22	37644771	37645130	+	0	NA	exon (NM_001350055, exon 9 of 18)	exon (NM_001350055, exon 9 of 18)	5281	NM_001350055	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
7420	chr1	32958621	32959200	+	0	NA	intron (NM_001127361, intron 1 of 8)	intron (NM_001127361, intron 1 of 8)	5899	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
204106	chr7	2209251	2209780	+	0	NA	intron (NM_001304524, intron 8 of 16)	intron (NM_001304524, intron 8 of 16)	23430	NM_003550	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
180708	chr5	23951151	23951580	+	0	NA	promoter-TSS (NR_131245)	promoter-TSS (NR_131245)	17	NR_131245	439936		NR_131245	ENSG00000248874	LINC02899	C5orf17	long intergenic non-protein coding RNA 2899	ncRNA
211581	chr7	105707671	105708130	+	0	NA	intron (NM_001385596, intron 3 of 11)	intron (NM_001385596, intron 3 of 11)	-28738	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
101080	chr17	64918821	64920750	+	0	NA	promoter-TSS (NM_001303255)	promoter-TSS (NM_001303255)	-294	NM_001303255	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
112701	chr19	7096351	7096450	+	0	NA	Intergenic	Intergenic	26697	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
8543	chr1	41026321	41026980	+	0	NA	TTS (NR_135092)	TTS (NR_135092)	-4895	NM_001168247	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
122754	chr19	50112371	50112750	+	0	NA	promoter-TSS (NR_024214).7	promoter-TSS (NR_024214).7	-72	NR_024228	100169958		NR_024228		SNAR-A8	-	small NF90 (ILF3) associated RNA A8	snRNA
136596	chr2	178448271	178448430	+	0	NA	intron (NM_001139518, intron 2 of 7)	intron (NM_001139518, intron 2 of 7)	2278	NM_001139518	8575		NM_003690	ENSG00000180228	PRKRA	DYT16|HSD14|PACT|RAX	protein activator of interferon induced protein kinase EIF2AK2	protein-coding
115668	chr19	16144921	16146000	+	0	NA	intron (NR_163150, intron 3 of 7)	AluSx|SINE|Alu	1775	NR_163153	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
23499	chr1	228695321	228695680	+	0	NA	intron (NR_037962, intron 1 of 2)	MER21B|LTR|ERVL	-39979	NM_021205	58480		NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
121628	chr19	47438601	47439050	+	0	NA	intron (NM_015063, intron 6 of 9)	intron (NM_015063, intron 6 of 9)	-16592	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
234898	chrX	30910201	30910500	+	0	NA	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-21096	NM_152787	257397		NM_152787	ENSG00000157625	TAB3	MAP3K7IP3|NAP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 3	protein-coding
128425	chr2	55311551	55311850	+	0	NA	intron (NM_018084, intron 23 of 31)	intron (NM_018084, intron 23 of 31)	29381	NR_027258	344405		NM_001080459	ENSG00000293422	PRORSD1P	NCRNA00117|PRDXDD1P|Prdxdd1|ProX|ProXp-ala|Ybakd1	prolyl-tRNA synthetase associated domain containing 1, pseudogene	pseudo
19695	chr1	181043121	181043380	+	0	NA	intron (NM_001310213, intron 3 of 6)	intron (NM_001310213, intron 3 of 6)	9267	NM_001385162	3140		NM_001531	ENSG00000153029	MR1	HLALS	major histocompatibility complex, class I-related	protein-coding
196858	chr6	47788001	47788600	+	0	NA	intron (NR_033806, intron 1 of 6)	intron (NR_033806, intron 1 of 6)	1232	NR_033806	221391		NM_181744	ENSG00000124818	OPN5	GPR136|GRP136|PGR12|TMEM13	opsin 5	protein-coding
149398	chr21	31161001	31161600	+	0	NA	promoter-TSS (NM_001353685)	promoter-TSS (NM_001353685)	-360	NM_001353685	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
141404	chr2	240893371	240893730	+	0	NA	intron (NM_001085437, intron 1 of 4)	intron (NM_001085437, intron 1 of 4)	-1515	NM_001282921	79919		NM_024861	ENSG00000172478	MAB21L4	C2orf54	mab-21 like 4	protein-coding
122903	chr19	50565301	50565900	+	0	NA	intron (NM_001080457, intron 1 of 2)	intron (NM_001080457, intron 1 of 2)	2835	NM_001080457	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
13414	chr1	113981401	113981800	+	0	NA	exon (NM_001286352, exon 4 of 4)	exon (NM_001286352, exon 4 of 4)	2126	NM_020190	56944		NM_020190	ENSG00000116774	OLFML3	HNOEL-iso|OLF44	olfactomedin like 3	protein-coding
217216	chr8	26440101	26441680	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	50477	NM_001330491	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
66519	chr14	61730671	61731150	+	0	NA	intron (NM_181054, intron 6 of 13)	intron (NM_181054, intron 6 of 13)	18179	NR_045406	100750247		NR_045406		HIF1A-AS2	3'aHIF-1A|aHIF	HIF1A antisense RNA 2	ncRNA
99320	chr17	49834171	49834580	+	0	NA	3' UTR (NM_007067, exon 15 of 15)	3' UTR (NM_007067, exon 15 of 15)	-11511	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
214269	chr7	148981471	148981980	+	0	NA	Intergenic	Intergenic	-2030	NR_004392	6085		NR_004392	ENSG00000202354	RNY3	HY3|Y3	RNA, Ro60-associated Y3	ncRNA
19660	chr1	180500771	180501200	+	0	NA	intron (NM_032360, intron 1 of 7)	intron (NM_032360, intron 1 of 7)	1592	NM_032360	84320		NM_032360	ENSG00000230124	ACBD6	NEDPM	acyl-CoA binding domain containing 6	protein-coding
218497	chr8	52706701	52706900	+	0	NA	intron (NM_001083617, intron 1 of 23)	AluSx|SINE|Alu	7635	NM_014781	9821		NM_014781	ENSG00000023287	RB1CC1	ATG17|CC1|FIP200|PPP1R131	RB1 inducible coiled-coil 1	protein-coding
239194	chrY	12908651	12909050	+	0	NA	intron (NR_136716, intron 2 of 14)	AluY|SINE|Alu	3145	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
14298	chr1	143794521	143794780	+	0	NA	intron (NR_145442, intron 1 of 1)	MLT1A0|LTR|ERVL-MaLR	1050	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
110635	chr19	2226471	2227600	+	0	NA	exon (NM_032482, exon 27 of 28)	exon (NM_032482, exon 27 of 28)	7114	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
142888	chr20	17940601	17940800	+	0	NA	TTS (NM_152227)	TTS (NM_152227)	22246	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
122653	chr19	49855671	49855900	+	0	NA	TTS (NR_110730)	TTS (NR_110730)	1194	NR_039904	100616313		NR_039904	ENSG00000265954	MIR4749	mir-4749	microRNA 4749	ncRNA
101201	chr17	65521851	65522150	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	39648	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
53840	chr12	69583371	69583680	+	0	NA	Intergenic	Intergenic	-1198	NR_037476	100500868		NR_037476	ENSG00000283677	MIR3913-2	mir-3913-2	microRNA 3913-2	ncRNA
170933	chr3	194312901	194313350	+	0	NA	promoter-TSS (NR_024480)	promoter-TSS (NR_024480)	-321	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
93763	chr17	20030751	20031050	+	0	NA	intron (NM_001243439, intron 1 of 14)	intron (NM_001243439, intron 1 of 14)	21541	NM_001243439	92521		NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP|NSP5	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding
36877	chr11	10543701	10543900	+	0	NA	intron (NR_034094, intron 1 of 2)	MER52A|LTR|ERV1	2564	NR_046375	100129827		NR_034093	ENSG00000177112	IRAG1-AS1	MRVI1-AS1	IRAG1 antisense RNA 1	ncRNA
81367	chr16	4849671	4850230	+	0	NA	intron (NM_001288656, intron 1 of 16)	AluJb|SINE|Alu	1570	NM_001288656	29855		NM_016936	ENSG00000118900	UBN1	VT|VT4	ubinuclein 1	protein-coding
84509	chr16	30507921	30508200	+	0	NA	intron (NM_002209, intron 21 of 30)	AluY|SINE|Alu	4141	NR_039743	100616405		NR_039743	ENSG00000266305	MIR4518	mir-4518	microRNA 4518	ncRNA
115940	chr19	16655001	16655200	+	0	NA	intron (NM_024104, intron 3 of 4)	intron (NM_024104, intron 3 of 4)	5044	NM_001300925	79086		NM_024104	ENSG00000214046	SMIM7	C19orf42	small integral membrane protein 7	protein-coding
223763	chr8	144525321	144525880	+	0	NA	TTS (NM_001001795)	TTS (NM_001001795)	1433	NM_001024678	441381		NM_001024678	ENSG00000254402	LRRC24	LRRC14OS	leucine rich repeat containing 24	protein-coding
74076	chr15	52661851	52662450	+	0	NA	intron (NR_169533, intron 3 of 3)	intron (NR_169533, intron 3 of 3)	-10110	NR_169552	56204		NM_019600	ENSG00000047346	ATOSA	FAM214A|KIAA1370	atos homolog A	protein-coding
71041	chr14	104786101	104787000	+	0	NA	intron (NM_001382433, intron 4 of 15)	intron (NM_001382433, intron 4 of 15)	7051	NM_005163	207		NM_005163	ENSG00000142208	AKT1	AKT|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding
75049	chr15	64158601	64159000	+	0	NA	intron (NM_000942, intron 3 of 4)	intron (NM_000942, intron 3 of 4)	4222	NM_000942	5479		NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding
203682	chr7	1020521	1021400	+	0	NA	intron (NR_146964, intron 1 of 4)	intron (NR_146964, intron 1 of 4)	2066	NR_029898	442907		NR_029898	ENSG00000199023	MIR339	MIRN339|hsa-mir-339|mir-339	microRNA 339	ncRNA
149366	chr21	29347351	29347650	+	0	NA	intron (NR_027655, intron 4 of 7)	intron (NR_027655, intron 4 of 7)	-25001	NR_046564	100874322		NR_046564		BACH1-IT2	-	BACH1 intronic transcript 2	ncRNA
25634	chr10	8121401	8121600	+	0	NA	Intergenic	L2b|LINE|L2	66812	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
15747	chr1	151135371	151135730	+	0	NA	intron (NM_001178061, intron 14 of 19)	intron (NM_001178061, intron 14 of 19)	11081	NM_030913	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
116095	chr19	17269801	17270200	+	0	NA	intron (NM_001033549, intron 2 of 8)	AluY|SINE|Alu	2557	NM_014173	29086		NM_014173	ENSG00000105393	BABAM1	C19orf62|HSPC142|MERIT40|NBA1	BRISC and BRCA1 A complex member 1	protein-coding
156015	chr22	39945171	39945330	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	-1567	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
91929	chr17	7326971	7327580	+	0	NA	intron (NM_032442, intron 2 of 28)	intron (NM_032442, intron 2 of 28)	2060	NM_032442	84461		NM_032442	ENSG00000215041	NEURL4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding
185809	chr5	132437251	132438250	+	0	NA	intron (NR_161242, intron 2 of 3)	intron (NR_161242, intron 2 of 3)	26821	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
95921	chr17	38916871	38917730	+	0	NA	intron (NM_006148, intron 6 of 6)	intron (NM_006148, intron 6 of 6)	2321	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
38081	chr11	35199471	35199980	+	0	NA	intron (NM_001001389, intron 6 of 16)	intron (NM_001001389, intron 6 of 16)	36775	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
213855	chr7	142290121	142290380	+	0	NA	Intergenic	Intergenic	-18001	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
64087	chr14	22587921	22588250	+	0	NA	intron (NM_001344, intron 1 of 2)	intron (NM_001344, intron 1 of 2)	1139	NM_001344	1603		NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding
195225	chr6	36143151	36143250	+	0	NA	non-coding (NR_072996, exon 10 of 10)	non-coding (NR_072996, exon 10 of 10)	12687	NM_002754	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
152926	chr22	22790351	22791100	+	0	NA	Intergenic	Intergenic	-32051	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
141172	chr2	239276851	239277250	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-28412	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA
112639	chr19	6799021	6800030	+	0	NA	intron (NM_005428, intron 1 of 26)	L1PA7|LINE|L1	26817	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
69149	chr14	92559951	92560900	+	0	NA	intron (NM_024832, intron 2 of 9)	intron (NM_024832, intron 2 of 9)	-15809	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
126224	chr2	26972321	26972580	+	0	NA	intron (NM_012326, intron 1 of 6)	intron (NM_012326, intron 1 of 6)	1813	NM_012326	22924		NM_012326	ENSG00000084764	MAPRE3	EB3|EBF3|EBF3-S|RP3	microtubule associated protein RP/EB family member 3	protein-coding
74283	chr15	57703301	57703900	+	0	NA	intron (NR_104371, intron 13 of 16)	intron (NR_104371, intron 13 of 16)	-2921	NM_001018102	81488		NM_015532	ENSG00000255529	POLR2M	GCOM1|GRINL1A|Gdown|Gdown1	RNA polymerase II subunit M	protein-coding
1624	chr1	3723001	3723400	+	0	NA	intron (NM_001204185, intron 5 of 12)	intron (NM_001204185, intron 5 of 12)	23571	NR_033712	57212		NM_207306	ENSG00000293478	GFOD3P	KIAA0495|PDAM|TP73-AS1	Gfo/Idh/MocA-like oxidoreductase domain containing 3, pseudogene	pseudo
32845	chr10	110052251	110052550	+	0	NA	intron (NM_016824, intron 1 of 14)	MER1B|DNA|hAT-Charlie	-44019	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
57132	chr12	121221221	121221480	+	0	NA	intron (NM_001261398, intron 2 of 10)	L1MB5|LINE|L1	11221	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
109927	chr19	1307321	1308130	+	0	NA	Intergenic	Intergenic	21852	NM_001405	1943		NM_001405	ENSG00000099617	EFNA2	ELF-1|EPLG6|HEK7-L|LERK-6|LERK6	ephrin A2	protein-coding
219008	chr8	63192201	63193000	+	0	NA	intron (NM_001277815, intron 5 of 5)	intron (NM_001277815, intron 5 of 5)	23597	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
182407	chr5	61338851	61340500	+	0	NA	intron (NM_020928, intron 1 of 13)	intron (NM_020928, intron 1 of 13)	7417	NM_020928	57688		NM_020928	ENSG00000130449	ZSWIM6	AFND|NEDMAGA	zinc finger SWIM-type containing 6	protein-coding
77369	chr15	82824151	82824450	+	0	NA	intron (NM_001080435, intron 6 of 9)	AluSx1|SINE|Alu	14672	NM_001080435	123720		NM_001080435	ENSG00000156232	WHAMM	WHAMM1|WHDC1	WASP homolog associated with actin, golgi membranes and microtubules	protein-coding
108237	chr18	63208451	63209000	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	111044	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
238239	chrX	141714321	141714400	+	0	NA	Intergenic	Intergenic	-15621	NM_032417	64648		NM_032417	ENSG00000196406	SPANXD	CT11.3|CT11.4|SPANX-C|SPANX-D|SPANX-E|SPANXC|SPANXE|dJ171K16.1	SPANX family member D	protein-coding
222302	chr8	133482221	133482950	+	0	NA	intron (NM_173344, intron 3 of 9)	intron (NM_173344, intron 3 of 9)	89302	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
150508	chr21	42850521	42851330	+	0	NA	intron (NM_033661, intron 10 of 11)	intron (NM_033661, intron 10 of 11)	28350	NM_001260477	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
208301	chr7	66078701	66078900	+	0	NA	intron (NM_001024943, intron 1 of 15)	AluSx1|SINE|Alu	2981	NM_001024946	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
30109	chr10	73991351	73992750	+	0	NA	Intergenic	Intergenic	-6066	NM_014000	7414		NM_003373	ENSG00000035403	VCL	CMD1W|CMH15|HEL114|MV|MVCL|VINC	vinculin	protein-coding
70976	chr14	104706421	104706680	+	0	NA	intron (NM_022489, intron 6 of 22)	intron (NM_022489, intron 6 of 22)	16932	NM_001031714	64423		NM_022489	ENSG00000203485	INF2	C14orf151|C14orf173|CMTDIE|FSGS5|pp9484	inverted formin 2	protein-coding
28373	chr10	47264771	47265250	+	0	NA	Intergenic	Intergenic	-35187	NM_004962	2662		NM_004962	ENSG00000266524	GDF10	BIP|BMP-3b|BMP3B	growth differentiation factor 10	protein-coding
100366	chr17	60055651	60055750	+	0	NA	intron (NM_022070, intron 13 of 19)	intron (NM_022070, intron 13 of 19)	-12595	NR_039890	100616210		NR_039890	ENSG00000264049	MIR4737	-	microRNA 4737	ncRNA
117386	chr19	19595251	19596050	+	0	NA	intron (NM_025245, intron 2 of 7)	intron (NM_025245, intron 2 of 7)	23037	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
226027	chr9	42435751	42436250	+	0	NA	Intergenic	L1P4b|LINE|L1	133349	NR_126050	103908605		NR_126050		FAM88E	-	family with sequence similarity 88 member E	ncRNA
43082	chr11	74745971	74746330	+	0	NA	Intergenic	Intergenic	-2699	NM_001098638	254225		NM_001098638	ENSG00000166439	RNF169	-	ring finger protein 169	protein-coding
229779	chr9	125230951	125231250	+	0	NA	intron (NM_001174153, intron 6 of 7)	AluSx|SINE|Alu	10243	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
131033	chr2	88171201	88171530	+	0	NA	5' UTR (NM_001384383, exon 1 of 7)	5' UTR (NM_001384383, exon 1 of 7)	1019	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
28425	chr10	48303921	48304180	+	0	NA	Intergenic	Intergenic	-2589	NM_001278547	5599		NM_002750	ENSG00000107643	MAPK8	JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c	mitogen-activated protein kinase 8	protein-coding
177257	chr4	109358851	109359400	+	0	NA	Intergenic	Intergenic	56090	NR_160939	645078		NM_001039778	ENSG00000246774	COL25A1-DT	ZCCHC23	COL25A1 divergent transcript	ncRNA
208034	chr7	55885301	55885900	+	0	NA	Intergenic	MADE1|DNA|TcMar-Mariner	-1856	NM_001366796	349075		NM_182633	ENSG00000178665	ZNF713	-	zinc finger protein 713	protein-coding
223664	chr8	144376471	144376630	+	0	NA	intron (NM_174922, intron 1 of 14)	intron (NM_174922, intron 1 of 14)	2503	NM_174922	203054		NM_174922	ENSG00000173137	ADCK5	-	aarF domain containing kinase 5	protein-coding
139022	chr2	218393801	218395300	+	0	NA	intron (NM_000578, intron 13 of 14)	intron (NM_000578, intron 13 of 14)	-3683	NM_001206878	58190		NM_021198	ENSG00000144579	CTDSP1	NIF3|NLI-IF|NLIIF|SCP1	CTD small phosphatase 1	protein-coding
60987	chr13	46728901	46729100	+	0	NA	intron (NM_015116, intron 17 of 18)	intron (NM_015116, intron 17 of 18)	68161	NM_001984	2098		NM_001984	ENSG00000139684	ESD	FGH	esterase D	protein-coding
133712	chr2	127362451	127362750	+	0	NA	intron (NM_001371911, intron 1 of 16)	intron (NM_001371911, intron 1 of 16)	-19371	NM_006609	10746		NM_006609	ENSG00000169967	MAP3K2	MEKK2|MEKK2B	mitogen-activated protein kinase kinase kinase 2	protein-coding
140927	chr2	237722621	237722980	+	0	NA	intron (NM_001137552, intron 4 of 10)	intron (NM_001137552, intron 4 of 10)	30595	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
215190	chr7	155741771	155742030	+	0	NA	exon (NM_053043, exon 13 of 18)	exon (NM_053043, exon 13 of 18)	67263	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
49269	chr12	19485701	19486200	+	0	NA	intron (NM_153207, intron 3 of 7)	(T)n|Simple_repeat|Simple_repeat	45351	NM_001267043	121536		NM_153207	ENSG00000139154	AEBP2	-	AE binding protein 2	protein-coding
234866	chrX	25049271	25049630	+	0	NA	Intergenic	Intergenic	-33485	NM_139058	170302		NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
237819	chrX	129976471	129977030	+	0	NA	Intergenic	Intergenic	-4229	NM_001184772	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
206772	chr7	36713401	36713600	+	0	NA	intron (NM_001177506, intron 1 of 21)	L1PA4|LINE|L1	10994	NM_001637	313		NM_001637	ENSG00000136250	AOAH	-	acyloxyacyl hydrolase	protein-coding
162474	chr3	48546471	48546630	+	0	NA	intron (NM_004567, intron 3 of 13)	intron (NM_004567, intron 3 of 13)	3471	NR_106881	102465494		NR_106881	ENSG00000278799	MIR6823	hsa-mir-6823	microRNA 6823	ncRNA
107817	chr18	52366451	52366550	+	0	NA	intron (NM_005215, intron 1 of 28)	LTR12C|LTR|ERV1	26303	NM_005215	1630		NM_005215	ENSG00000187323	DCC	CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1	DCC netrin 1 receptor	protein-coding
56862	chr12	120264151	120264690	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	1310	NM_002859	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
3357	chr1	15584251	15585580	+	0	NA	exon (NM_024758, exon 1 of 7)	exon (NM_024758, exon 1 of 7)	136	NM_024758	79814		NM_024758	ENSG00000116771	AGMAT	-	agmatinase (putative)	protein-coding
115696	chr19	16202751	16203050	+	0	NA	intron (NM_001130524, intron 1 of 12)	L1ME1|LINE|L1	4989	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
155616	chr22	38861971	38863200	+	0	NA	3' UTR (NM_001303494, exon 5 of 5)	3' UTR (NM_001303494, exon 5 of 5)	9631	NM_001303494	23466		NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding
136568	chr2	177724621	177724930	+	0	NA	intron (NM_001077358, intron 11 of 18)	intron (NM_001077358, intron 11 of 18)	51453	NR_136171	105373764		NR_136171	ENSG00000229941	PDE11A-AS1	-	PDE11A antisense RNA 1	ncRNA
213961	chr7	142785631	142786330	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	15010	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
58815	chr12	132818221	132818900	+	0	NA	intron (NM_005895, intron 2 of 23)	intron (NM_005895, intron 2 of 23)	9829	NM_005895	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
141229	chr2	239544901	239545500	+	0	NA	Intergenic	Intergenic	143452	NR_135577	101928111		NR_135575	ENSG00000222020	HDAC4-AS1	-	HDAC4 antisense RNA 1	ncRNA
200155	chr6	130453101	130453610	+	0	NA	Intergenic	Intergenic	16238	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
148344	chr20	63819371	63820150	+	0	NA	intron (NR_110081, intron 1 of 2)	intron (NR_110081, intron 1 of 2)	11504	NM_001369741	140685		NM_025224	ENSG00000130584	ZBTB46	BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8	zinc finger and BTB domain containing 46	protein-coding
176435	chr4	89273601	89273800	+	0	NA	intron (NM_198281, intron 1 of 1)	AluSg7|SINE|Alu	34100	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
63221	chr13	113863101	113864500	+	0	NA	promoter-TSS (NR_044993)	promoter-TSS (NR_044993)	276	NM_000820	2621		NM_000820	ENSG00000183087	GAS6	AXLLG|AXSF	growth arrest specific 6	protein-coding
194031	chr6	31834151	31836000	+	0	NA	promoter-TSS (NR_002745)	promoter-TSS (NR_002745)	159	NR_160947	50854		NM_016947	ENSG00000204387	SNHG32	C6orf48|D6S57|G8	small nucleolar RNA host gene 32	ncRNA
37839	chr11	33329701	33329980	+	0	NA	intron (NM_001048200, intron 3 of 15)	intron (NM_001048200, intron 3 of 15)	-46268	NM_012194	25758		NM_012194	ENSG00000110427	KIAA1549L	C11orf41|C11orf69|G2	KIAA1549 like	protein-coding
218479	chr8	51884571	51884730	+	0	NA	intron (NM_052937, intron 1 of 5)	LTR41|LTR|ERVL	14386	NM_001363193	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
109174	chr19	319001	319200	+	0	NA	intron (NM_001346105, intron 6 of 12)	AluSx1|SINE|Alu	25741	NM_001346105	54531		NM_017550	ENSG00000105556	MIER2	KIAA1193|Mi-er2	MIER family member 2	protein-coding
48853	chr12	12387521	12387830	+	0	NA	intron (NM_058169, intron 2 of 3)	Plat_L3|LINE|CR1	30597	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
53134	chr12	57842321	57843350	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	3894	NM_005730	10106		NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding
5904	chr1	26826251	26827600	+	0	NA	exon (NM_032283, exon 1 of 8)	exon (NM_032283, exon 1 of 8)	237	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
182044	chr5	55856471	55857430	+	0	NA	intron (NM_001297572, intron 2 of 10)	intron (NM_001297572, intron 2 of 10)	3628	NM_001242639	133396		NM_139017	ENSG00000164509	IL31RA	CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R|zcytoR17	interleukin 31 receptor A	protein-coding
238148	chrX	136765351	136766050	+	0	NA	intron (NM_004840, intron 2 of 21)	intron (NM_004840, intron 2 of 21)	2115	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
197265	chr6	70568171	70569230	+	0	NA	intron (NM_145267, intron 1 of 2)	L1MEd|LINE|L1	1770	NM_145267	135154		NM_145267	ENSG00000154079	SDHAF4	C6orf57|Sdh8	succinate dehydrogenase complex assembly factor 4	protein-coding
196970	chr6	53059301	53059880	+	0	NA	intron (NM_001375400, intron 1 of 14)	L2b|LINE|L2	2234	NM_001375398	22858		NM_014920	ENSG00000112144	CILK1	ECO|EJM10|ICK|LCK2|MRK|hICK	ciliogenesis associated kinase 1	protein-coding
85667	chr16	56281101	56281480	+	0	NA	intron (NM_020988, intron 3 of 8)	intron (NM_020988, intron 3 of 8)	35770	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA
1401	chr1	2551521	2552030	+	0	NA	non-coding (NR_037844, exon 5 of 7)	non-coding (NR_037844, exon 5 of 7)	-4590	NM_001297605	8764		NM_003820	ENSG00000157873	TNFRSF14	ATAR|CD270|HVEA|HVEM|LIGHTR|TR2	TNF receptor superfamily member 14	protein-coding
194304	chr6	32805621	32805880	+	0	NA	Intergenic	L1PA13|LINE|L1	11252	NM_002120	3112		NM_002120	ENSG00000241106	HLA-DOB	DOB|HLA_DOB	major histocompatibility complex, class II, DO beta	protein-coding
13889	chr1	119318521	119318780	+	0	NA	Intergenic	L2c|LINE|L2	-9602	NR_146623	105378934		NR_146623	ENSG00000232650	LINC01780	-	long intergenic non-protein coding RNA 1780	ncRNA
138998	chr2	218325051	218325350	+	0	NA	intron (NM_022572, intron 1 of 8)	AluSx1|SINE|Alu	2021	NM_022572	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
92233	chr17	7906551	7906850	+	0	NA	TTS (NR_003000)	TTS (NR_003000)	577	NR_003000	677763		NR_003000	ENSG00000252835	SCARNA21	ACA68|SCARNA21A	small Cajal body-specific RNA 21	ncRNA
31975	chr10	100743321	100744430	+	0	NA	intron (NM_001374303, intron 1 of 2)	intron (NM_001374303, intron 1 of 2)	-1707	NM_003987	5076		NM_000278	ENSG00000075891	PAX2	FSGS7|PAPRS|PAX-2	paired box 2	protein-coding
85378	chr16	50279151	50279950	+	0	NA	intron (NM_001114, intron 1 of 25)	intron (NM_001114, intron 1 of 25)	12999	NM_001286057	113		NM_001114	ENSG00000121281	ADCY7	AC7	adenylate cyclase 7	protein-coding
230378	chr9	128080271	128080730	+	0	NA	intron (NM_001006641, intron 1 of 9)	AluSq|SINE|Alu	-10964	NM_001006642	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
224785	chr9	22078171	22078530	+	0	NA	TTS (NR_047542)	TTS (NR_047542)	-69037	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
47084	chr12	622171	622950	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	-8331	NR_122124	100049716		NR_122124	ENSG00000177406	NINJ2-AS1	-	NINJ2 antisense RNA 1	ncRNA
91205	chr17	3913751	3914630	+	0	NA	intron (NM_002558, intron 1 of 11)	MIRb|SINE|MIR	2275	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
50802	chr12	49063471	49064430	+	0	NA	TTS (NM_001303126)	TTS (NM_001303126)	-3156	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
179199	chr4	173367251	173367980	+	0	NA	Intergenic	Intergenic	-3339	NM_003864	8819		NM_003864	ENSG00000164105	SAP30	-	Sin3A associated protein 30	protein-coding
137353	chr2	196153101	196153600	+	0	NA	intron (NM_004226, intron 3 of 7)	L1MC5a|LINE|L1	18228	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
166338	chr3	112966871	112967230	+	0	NA	intron (NM_138939, intron 1 of 3)	L2b|LINE|L2	8053	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
121386	chr19	46910021	46910280	+	0	NA	intron (NM_004491, intron 1 of 6)	AluJr4|SINE|Alu	49153	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
21653	chr1	206684421	206685400	+	0	NA	promoter-TSS (NM_004759)	promoter-TSS (NM_004759)	5	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
36169	chr11	3162101	3162500	+	0	NA	intron (NM_145638, intron 1 of 20)	L2|LINE|L2	3010	NM_001144063	114879		NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding
133831	chr2	127981421	127981680	+	0	NA	intron (NM_001145928, intron 14 of 20)	LTR21C|LTR|ERVL	45745	NM_001145928	79595		NM_024545	ENSG00000136715	SAP130	-	Sin3A associated protein 130	protein-coding
6550	chr1	28646721	28646980	+	0	NA	intron (NR_146730, intron 1 of 1)	AluY|SINE|Alu	-1750	NR_004407	26824		NR_004407	ENSG00000274978	RNU11	RNU11-1|U11	RNA, U11 small nuclear	snRNA
154629	chr22	36318601	36319030	+	0	NA	intron (NM_002473, intron 10 of 40)	AluSq4|SINE|Alu	-31908	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
140174	chr2	231648601	231649030	+	0	NA	Intergenic	Intergenic	55951	NM_152614	165100		NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding
114936	chr19	13973821	13974530	+	0	NA	intron (NM_002918, intron 8 of 20)	L2a|LINE|L2	-20783	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
133516	chr2	120174701	120175730	+	0	NA	3' UTR (NM_001330310, exon 25 of 25)	3' UTR (NM_001330310, exon 25 of 25)	48185	NM_024121	79134		NM_024121	ENSG00000226479	TMEM185B	FAM11B	transmembrane protein 185B	protein-coding
128316	chr2	54657571	54658330	+	0	NA	exon (NM_003128, exon 30 of 36)	exon (NM_003128, exon 30 of 36)	-67062	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
104878	chr17	81869281	81872900	+	0	NA	promoter-TSS (NM_001185077)	promoter-TSS (NM_001185077)	-93	NM_001301241	396		NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
88196	chr16	81769721	81770250	+	0	NA	Intergenic	MIRb|SINE|MIR	-9306	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
10497	chr1	66445371	66445850	+	0	NA	Intergenic	Intergenic	-87751	NM_001376535	84251		NM_032291	ENSG00000118473	SGIP1	-	SH3GL interacting endocytic adaptor 1	protein-coding
46474	chr11	128304171	128304330	+	0	NA	Intergenic	MIRc|SINE|MIR	95484	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
208850	chr7	73705001	73705200	+	0	NA	intron (NM_001165903, intron 4 of 9)	intron (NM_001165903, intron 4 of 9)	-6217	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA
206576	chr7	35686671	35686930	+	0	NA	intron (NM_022373, intron 2 of 8)	AluSx3|SINE|Alu	8335	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
179042	chr4	165255151	165255880	+	0	NA	intron (NM_001161522, intron 3 of 13)	intron (NM_001161522, intron 3 of 13)	24508	NR_026575	2713		NM_001395953	ENSG00000229894	GK3	GK3P|GKP3|GKTB	glycerol kinase 3	protein-coding
97030	chr17	42310621	42311250	+	0	NA	3' UTR (NM_001288720, exon 18 of 18)	3' UTR (NM_001288720, exon 18 of 18)	22879	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
1091	chr1	1988571	1988930	+	0	NA	intron (NM_001304360, intron 3 of 38)	intron (NM_001304360, intron 3 of 38)	15036	NM_001304360	85452		NM_001003808	ENSG00000142609	CFAP74	C1orf222|CILD49|KIAA1751	cilia and flagella associated protein 74	protein-coding
163989	chr3	53134521	53135130	+	0	NA	Intergenic	Intergenic	-4390	NM_052859	91869		NM_052859	ENSG00000163933	RFT1	CDG1N	RFT1 homolog	protein-coding
137059	chr2	190895571	190896180	+	0	NA	intron (NM_014905, intron 3 of 17)	intron (NM_014905, intron 3 of 17)	15054	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
164000	chr3	53164921	53165580	+	0	NA	intron (NM_001316327, intron 2 of 18)	intron (NM_001316327, intron 2 of 18)	-3453	NM_001354678	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
178234	chr4	143187871	143188480	+	0	NA	intron (NM_032557, intron 2 of 9)	intron (NM_032557, intron 2 of 9)	3258	NM_032557	84640		NM_032557	ENSG00000170185	USP38	HP43.8KD	ubiquitin specific peptidase 38	protein-coding
207057	chr7	39732651	39733870	+	0	NA	promoter-TSS (NR_026999)	promoter-TSS (NR_026999)	-308	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
226138	chr9	63428801	63429200	+	0	NA	Intergenic	Intergenic	94462	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
230901	chr9	129235601	129236680	+	0	NA	Intergenic	Intergenic	-46276	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
179924	chr5	755871	756230	+	0	NA	exon (NM_001351303, exon 5 of 14)	exon (NM_001351303, exon 5 of 14)	28679	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
161680	chr3	43369951	43370650	+	0	NA	intron (NM_001346463, intron 12 of 12)	intron (NM_001346463, intron 12 of 12)	-18338	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
138966	chr2	218268571	218268730	+	0	NA	intron (NM_001302545, intron 2 of 10)	intron (NM_001302545, intron 2 of 10)	1487	NM_001087	14		NM_001087	ENSG00000127837	AAMP	-	angio associated migratory cell protein	protein-coding
140402	chr2	233085871	233086050	+	0	NA	intron (NM_001017915, intron 2 of 26).2	intron (NM_001017915, intron 2 of 26).2	25618	NM_001017915	3635		NM_005541	ENSG00000168918	INPP5D	SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship	inositol polyphosphate-5-phosphatase D	protein-coding
51264	chr12	51081001	51081430	+	0	NA	intron (NM_030809, intron 1 of 4)	AluSz6|SINE|Alu	2381	NR_045072	81566		NM_030809	ENSG00000110925	CSRNP2	C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12	cysteine and serine rich nuclear protein 2	protein-coding
185612	chr5	131423371	131423530	+	0	NA	TTS (NM_001164386)	TTS (NM_001164386)	159397	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
165894	chr3	106227121	106227380	+	0	NA	Intergenic	L1PA16|LINE|L1	-357849	NR_135810	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
3836	chr1	16904601	16906780	+	0	NA	Intergenic	LTR4|LTR|ERV1	9710	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
124111	chr19	55660221	55660680	+	0	NA	intron (NM_007279, intron 3 of 11)	intron (NM_007279, intron 3 of 11)	5415	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
201441	chr6	147320371	147320530	+	0	NA	intron (NM_139244, intron 16 of 25)	intron (NM_139244, intron 16 of 25)	-115836	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
198719	chr6	108174321	108174950	+	0	NA	intron (NM_001286102, intron 2 of 8)	CpG	6612	NM_001286102	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
76638	chr15	75608301	75608500	+	0	NA	intron (NM_001042588, intron 5 of 8)	intron (NM_001042588, intron 5 of 8)	17325	NM_005701	10073		NM_005701	ENSG00000169371	SNUPN	KPNBL|RNUT1|Snurportin1	snurportin 1	protein-coding
229797	chr9	125291151	125291530	+	0	NA	intron (NM_001354301, intron 3 of 27)	L2a|LINE|L2	29514	NM_001354295	26130		NM_015635	ENSG00000165219	GAPVD1	GAPEX5|GAPex-5|RAP6	GTPase activating protein and VPS9 domains 1	protein-coding
168610	chr3	149507901	149508100	+	0	NA	Intergenic	Intergenic	33303	NM_004617	7104		NM_004617	ENSG00000169903	TM4SF4	ILTMP|il-TMP	transmembrane 4 L six family member 4	protein-coding
88358	chr16	84576371	84576530	+	0	NA	intron (NM_021149, intron 3 of 3)	L2a|LINE|L2	41628	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
230651	chr9	128697621	128697880	+	0	NA	Intergenic	Intergenic	-4753	NM_013355	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
23563	chr1	229407071	229407230	+	0	NA	Intergenic	Intergenic	26944	NM_001100	58		NM_001100	ENSG00000143632	ACTA1	ACTA|ASMA|CFTD|CFTD1|CFTDM|CMYP2A|CMYP2B|CMYP2C|MPFD|NEM1|NEM2|NEM3|SHPM	actin alpha 1, skeletal muscle	protein-coding
188258	chr5	151077921	151079180	+	0	NA	intron (NM_001252390, intron 1 of 17)	L2a|LINE|L2	2484	NM_001252386	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
161569	chr3	42803821	42805550	+	0	NA	promoter-TSS (NM_001099668)	promoter-TSS (NM_001099668)	-150	NM_001099669	25994		NM_014056	ENSG00000181061	HIGD1A	HIG1|RCF1a	HIG1 hypoxia inducible domain family member 1A	protein-coding
117628	chr19	23379971	23380130	+	0	NA	intron (NM_003430, intron 1 of 3)	AluSx3|SINE|Alu	15421	NM_003430	7644		NM_003430	ENSG00000167232	ZNF91	HPF7|HTF10	zinc finger protein 91	protein-coding
191789	chr6	14139351	14139650	+	0	NA	Intergenic	Intergenic	21728	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
136792	chr2	181478271	181478430	+	0	NA	intron (NM_000885, intron 4 of 27)	L1MA9|LINE|L1	20964	NM_000885	3676		NM_000885	ENSG00000115232	ITGA4	CD49D|IA4	integrin subunit alpha 4	protein-coding
120060	chr19	42070601	42070800	+	0	NA	intron (NM_001330519, intron 1 of 1)	intron (NM_001330519, intron 1 of 1)	2223	NM_001330519	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
227581	chr9	92328351	92328450	+	0	NA	intron (NM_001286969, intron 1 of 6)	MIR|SINE|MIR	2447	NM_001012267	401541		NM_001012267	ENSG00000188312	CENPP	CENP-P	centromere protein P	protein-coding
221216	chr8	120868601	120869300	+	0	NA	Intergenic	MER57A1|LTR|ERV1	-56904	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
178380	chr4	146524471	146524630	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	-2579	NM_032128	84068		NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7|SSASKS	solute carrier family 10 member 7	protein-coding
141047	chr2	238239601	238242150	+	0	NA	promoter-TSS (NM_001282434)	promoter-TSS (NM_001282434)	-837	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
45873	chr11	119723271	119723630	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	5750	NM_002855	5818		NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding
119725	chr19	41221201	41221500	+	0	NA	intron (NM_021913, intron 3 of 19)	intron (NM_021913, intron 3 of 19)	2127	NM_021913	558		NM_001699	ENSG00000167601	AXL	ARK|AXL3|JTK11|Tyro7|UFO	AXL receptor tyrosine kinase	protein-coding
177814	chr4	123505451	123505950	+	0	NA	Intergenic	Intergenic	106160	NM_005841	10252		NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
182922	chr5	70719261	70720530	+	0	NA	non-coding (NR_146391, exon 1 of 11).3	non-coding (NR_146391, exon 1 of 11).3	106	NR_146391	653080		NR_146391		GUSBP16	-	GUSB pseudogene 16	pseudo
9859	chr1	54287151	54288330	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	51297	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
89740	chr16	89437351	89437830	+	0	NA	intron (NR_110932, intron 1 of 2)	intron (NR_110932, intron 1 of 2)	6672	NR_110931	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
202159	chr6	155248251	155248580	+	0	NA	intron (NM_001384547, intron 19 of 25)	intron (NM_001384547, intron 19 of 25)	-15598	NM_001001346	49861		NM_001001346	ENSG00000171217	CLDN20	-	claudin 20	protein-coding
109402	chr19	673951	674250	+	0	NA	Intergenic	Intergenic	-2292	NM_005860	10272		NM_005860	ENSG00000070404	FSTL3	FLRG|FSRP	follistatin like 3	protein-coding
132157	chr2	101753201	101753600	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	55135	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
191617	chr6	12158771	12159000	+	0	NA	intron (NM_002114, intron 7 of 8)	intron (NM_002114, intron 7 of 8)	-131476	NM_001955	1906		NM_001955	ENSG00000078401	EDN1	ARCND3|ET1|HDLCQ7|PPET1|QME	endothelin 1	protein-coding
153095	chr22	23478101	23478300	+	0	NA	intron (NR_165490, intron 4 of 11)	intron (NR_165490, intron 4 of 11)	8780	NR_110539	388882		NR_110539	ENSG00000178248	FAM230I	LINC01658	family with sequence similarity 230 member I	ncRNA
113015	chr19	7919671	7921530	+	0	NA	promoter-TSS (NR_030717)	promoter-TSS (NR_030717)	262	NM_003083	6618		NM_003083	ENSG00000104976	SNAPC2	PTFDELTA|SNAP45	small nuclear RNA activating complex polypeptide 2	protein-coding
237952	chrX	132740571	132740730	+	0	NA	intron (NM_001077188, intron 3 of 5)	intron (NM_001077188, intron 3 of 5)	73008	NR_046691	100874102		NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
21334	chr1	204545771	204546650	+	0	NA	intron (NM_002393, intron 9 of 10)	AluJo|SINE|Alu	29804	NM_002393	4194		NM_002393	ENSG00000198625	MDM4	BMFS6|HDMX|MDMX|MRP1	MDM4 regulator of p53	protein-coding
17412	chr1	156646371	156647100	+	0	NA	intron (NM_198427, intron 2 of 7)	intron (NM_198427, intron 2 of 7)	4618	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
64439	chr14	24205671	24206130	+	0	NA	5' UTR (NM_001184739, exon 1 of 4).2	5' UTR (NM_001184739, exon 1 of 4).2	204	NM_001308067	283629		NM_174944	ENSG00000139908	TSSK4	C14orf20|STK22E|TSK-4|TSK4|TSSK5	testis specific serine kinase 4	protein-coding
147451	chr20	58984271	58984430	+	0	NA	intron (NM_198976, intron 1 of 14)	L2|LINE|L2	3094	NM_198976	51497		NM_016397	ENSG00000101158	NELFCD	HSPC130|NELF-C|NELF-D|TH1|TH1L	negative elongation factor complex member C/D	protein-coding
164281	chr3	57585901	57586530	+	0	NA	intron (NM_001660, intron 1 of 5)	intron (NM_001660, intron 1 of 5)	11129	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
126409	chr2	27654421	27654680	+	0	NA	intron (NM_001282731, intron 5 of 5)	intron (NM_001282731, intron 5 of 5)	-8921	NM_018158	22950		NM_018158	ENSG00000163798	SLC4A1AP	HLC3	solute carrier family 4 member 1 adaptor protein	protein-coding
107254	chr18	41956701	41957100	+	0	NA	intron (NM_001308020, intron 1 of 23)	MIRb|SINE|MIR	1666	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
198687	chr6	108072871	108073030	+	0	NA	intron (NM_014028, intron 1 of 5)	AluSx|SINE|Alu	1791	NM_014028	28962		NM_014028	ENSG00000081087	OSTM1	GIPN|GL|HSPC019|OPTB5	osteoclastogenesis associated transmembrane protein 1	protein-coding
157450	chr22	45245701	45246150	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5031	NM_001009880	23313		NM_015264	ENSG00000100364	KIAA0930	C22orf9|LSC3	KIAA0930	protein-coding
15969	chr1	151898051	151899530	+	0	NA	intron (NM_053055, intron 1 of 5)	L1PBa1|LINE|L1	10721	NM_053055	117145		NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding
11961	chr1	94017321	94018030	+	0	NA	intron (NM_000350, intron 36 of 49)	L1MC4|LINE|L1	103473	NM_000350	24		NM_000350	ENSG00000198691	ABCA4	ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1	ATP binding cassette subfamily A member 4	protein-coding
163548	chr3	51683301	51684250	+	0	NA	intron (NM_001243727, intron 2 of 3)	intron (NM_001243727, intron 2 of 3)	12148	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
171310	chr3	195965321	195965580	+	0	NA	non-coding (NR_003264, exon 15 of 17)	non-coding (NR_003264, exon 15 of 17)	24829	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
228286	chr9	98086151	98086450	+	0	NA	3' UTR (NM_014788, exon 6 of 6)	3' UTR (NM_014788, exon 6 of 6)	29568	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
65583	chr14	52013571	52013730	+	0	NA	intron (NM_007361, intron 16 of 21)	intron (NM_007361, intron 16 of 21)	24104	NM_016039	51637		NM_016039	ENSG00000087302	RTRAF	C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1	RNA transcription, translation and transport factor	protein-coding
237602	chrX	123966121	123966380	+	0	NA	intron (NM_001282418, intron 2 of 33)	AluSg|SINE|Alu	4544	NM_006603	10735		NM_006603	ENSG00000101972	STAG2	HPE13|MKMS|NEDXCF|SA-2|SA2|SCC3B|bA517O1.1	STAG2 cohesin complex component	protein-coding
99579	chr17	50484401	50484950	+	0	NA	intron (NR_130911, intron 4 of 4)	intron (NR_130911, intron 4 of 4)	5815	NM_018346	55316		NM_018346	ENSG00000136444	RSAD1	HemW	radical S-adenosyl methionine domain containing 1	protein-coding
77661	chr15	85543071	85544150	+	0	NA	intron (NM_007200, intron 4 of 36)	intron (NM_007200, intron 4 of 36)	-76340	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
136547	chr2	177392221	177394030	+	0	NA	promoter-TSS (NR_026966)	promoter-TSS (NR_026966)	352	NM_003659	8540		NM_003659	ENSG00000018510	AGPS	ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3	alkylglycerone phosphate synthase	protein-coding
206549	chr7	35626321	35626580	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	68685	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
56901	chr12	120361571	120362430	+	0	NA	intron (NM_002442, intron 6 of 14)	CpG	7164	NM_002442	4440		NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding
157044	chr22	42574201	42574400	+	0	NA	TTS (NM_001284334)	TTS (NM_001284334)	7711	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
185966	chr5	133060651	133061150	+	0	NA	intron (NM_002154, intron 1 of 18)	AluJo|SINE|Alu	8887	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
169593	chr3	170911701	170912430	+	0	NA	Intergenic	AluSc8|SINE|Alu	-3428	NM_020390	56648		NM_020390	ENSG00000163577	EIF5A2	EIF-5A2|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
212212	chr7	120792071	120792380	+	0	NA	intron (NM_012338, intron 7 of 7)	L1M4|LINE|L1	65919	NM_012338	23554		NM_012338	ENSG00000106025	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding
192035	chr6	16472471	16472630	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	233963	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
6142	chr1	27381421	27382050	+	0	NA	intron (NM_207397, intron 4 of 4)	MIRb|SINE|MIR	1598	NM_207397	388611		NM_207397	ENSG00000174950	CD164L2	EAPG6122|UNQ6122	CD164 molecule like 2	protein-coding
166790	chr3	122514501	122515630	+	0	NA	promoter-TSS (NR_026698)	promoter-TSS (NR_026698)	-126	NM_002264	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
56372	chr12	113157321	113158100	+	0	NA	3' UTR (NM_001111322, exon 20 of 20)	3' UTR (NM_001111322, exon 20 of 20)	1467	NR_106956	102466222		NR_106956	ENSG00000276908	MIR7106	hsa-mir-7106	microRNA 7106	ncRNA
190333	chr5	179628601	179628800	+	0	NA	intron (NM_001364226, intron 1 of 13)	AluSz|SINE|Alu	-4100	NM_001364237	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
138612	chr2	208406621	208407080	+	0	NA	promoter-TSS (NM_005048)	promoter-TSS (NM_005048)	58	NM_005048	5746		NM_005048	ENSG00000144407	PTH2R	PTHR2	parathyroid hormone 2 receptor	protein-coding
212983	chr7	130982151	130983550	+	0	NA	intron (NR_109851, intron 4 of 5)	intron (NR_109851, intron 4 of 5)	69386	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
82769	chr16	21432971	21433650	+	0	NA	non-coding (NR_024456, exon 1 of 1).2	non-coding (NR_024456, exon 1 of 1).2	1145	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
146112	chr20	48384271	48384430	+	0	NA	Intergenic	Intergenic	24439	NR_026958	284749		NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA
98154	chr17	46030871	46031300	+	0	NA	3' UTR (NM_001379198, exon 16 of 16).3	3' UTR (NM_001379198, exon 16 of 16).3	31835	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
135258	chr2	159728601	159728800	+	0	NA	intron (NM_001376237, intron 2 of 10)	intron (NM_001376237, intron 2 of 10)	-5264	NM_001282807	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
28863	chr10	62681251	62681980	+	0	NA	Intergenic	Intergenic	-123105	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
151075	chr21	44812021	44812430	+	0	NA	intron (NM_006936, intron 2 of 3)	AluJr|SINE|Alu	5837	NM_006936	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
105771	chr18	2794271	2794980	+	0	NA	intron (NM_015295, intron 45 of 47)	intron (NM_015295, intron 45 of 47)	-52381	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
17635	chr1	157131801	157132300	+	0	NA	intron (NM_001145312, intron 4 of 4)	AluSx1|SINE|Alu	3688	NR_001560	360155		NR_001560	ENSG00000235700	CYCSP52	HC6|HCP2	CYCS pseudogene 52	pseudo
229542	chr9	122897951	122898380	+	0	NA	intron (NM_018835, intron 1 of 17)	intron (NM_018835, intron 1 of 17)	7194	NM_001354486	54542		NM_018835	ENSG00000056586	RC3H2	MNAB|RNF164	ring finger and CCCH-type domains 2	protein-coding
82538	chr16	18382671	18382830	+	0	NA	non-coding (NR_146331, exon 19 of 38)	non-coding (NR_146331, exon 19 of 38)	-3340	NR_106828	102465461		NR_106828	ENSG00000278265	MIR6770-1	hsa-mir-6770-1	microRNA 6770-1	ncRNA
72903	chr15	40343621	40343880	+	0	NA	Intergenic	Intergenic	-2783	NM_207380	388115		NM_207380	ENSG00000188549	CCDC9B	C15orf52	coiled-coil domain containing 9B	protein-coding
160289	chr3	27349701	27350100	+	0	NA	intron (NM_199347, intron 4 of 24)	intron (NM_199347, intron 4 of 24)	19483	NM_199347	152110		NM_152534	ENSG00000163491	NEK10	CILD44	NIMA related kinase 10	protein-coding
196699	chr6	44926521	44926850	+	0	NA	intron (NM_001350324, intron 10 of 11)	MIR|SINE|MIR	271085	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
71935	chr15	22979951	22981000	+	0	NA	promoter-TSS (NM_001324124)	promoter-TSS (NM_001324124)	-107	NM_001287810	23191		NM_014608	ENSG00000273749	CYFIP1	P140SRA-1|SHYC|SRA-1|SRA1	cytoplasmic FMR1 interacting protein 1	protein-coding
166461	chr3	114219851	114220680	+	0	NA	Intergenic	Intergenic	17313	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
92315	chr17	8130771	8131000	+	0	NA	Intergenic	AluY|SINE|Alu	-6779	NM_001165967	84667		NM_032580	ENSG00000179111	HES7	SCDO4|bHLHb37|hHes7	hes family bHLH transcription factor 7	protein-coding
228764	chr9	110249071	110249630	+	0	NA	intron (NM_001244938, intron 2 of 3)	intron (NM_001244938, intron 2 of 3)	7157	NM_003329	7295		NM_003329	ENSG00000136810	TXN	TRDX|TRX|TRX1|TXN1|Trx80	thioredoxin	protein-coding
131682	chr2	97721051	97722030	+	0	NA	intron (NM_001079, intron 2 of 13)	AluY|SINE|Alu	7658	NM_001378594	7535		NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding
134002	chr2	130873501	130874080	+	0	NA	intron (NM_001375900, intron 1 of 12)	intron (NM_001375900, intron 1 of 12)	36876	NM_001375901	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
110756	chr19	2359871	2361030	+	0	NA	Intergenic	CpG	-24815	NM_182973	360200		NM_182973	ENSG00000178297	TMPRSS9	-	transmembrane serine protease 9	protein-coding
33685	chr10	119900821	119901430	+	0	NA	intron (NM_007190, intron 2 of 18)	AluJr|SINE|Alu	8395	NM_007190	11196		NM_007190	ENSG00000107651	SEC23IP	MSTP053|P125|P125A|iPLA1A|iPLA1beta	SEC23 interacting protein	protein-coding
167106	chr3	127599601	127599800	+	0	NA	intron (NR_073375, intron 2 of 15)	intron (NR_073375, intron 2 of 15)	1289	NR_073375	4171		NM_004526	ENSG00000073111	MCM2	BM28|CCNL1|CDCL1|D3S3194|DFNA70|MITOTIN|cdc19	minichromosome maintenance complex component 2	protein-coding
71457	chr14	105857801	105858880	+	0	NA	promoter-TSS (NR_130468)	promoter-TSS (NR_130468)	-98	NR_130467	100616276		NR_130467	ENSG00000263413	MIR4538	-	microRNA 4538	ncRNA
32510	chr10	102767551	102767650	+	0	NA	intron (NM_001083913, intron 1 of 3)	intron (NM_001083913, intron 1 of 3)	-8621	NM_017787	54838		NM_017787	ENSG00000166272	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1 like	protein-coding
234659	chrX	20138851	20139650	+	0	NA	promoter-TSS (NR_046592)	promoter-TSS (NR_046592)	-718	NR_046592	100874078		NR_046592	ENSG00000225037	EIF1AX-AS1	-	EIF1AX antisense RNA 1	ncRNA
201712	chr6	149719771	149719930	+	0	NA	TTS (NR_134652)	TTS (NR_134652)	-1594	NM_001270519	9113		NM_004690	ENSG00000131023	LATS1	WARTS|wts	large tumor suppressor kinase 1	protein-coding
104657	chr17	81480651	81480750	+	0	NA	Intergenic	LTR33|LTR|ERVL	-29512	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
9389	chr1	47388721	47388980	+	0	NA	intron (NR_126355, intron 3 of 4)	intron (NR_126355, intron 3 of 4)	-27435	NM_012186	2301		NM_012186	ENSG00000186790	FOXE3	AAT11|ASGD2|CATC3|CTRCT34|FKHL12|FREAC8	forkhead box E3	protein-coding
218446	chr8	47958851	47958950	+	0	NA	intron (NM_006904, intron 1 of 85)	AluSx1|SINE|Alu	1236	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
77879	chr15	89017271	89018030	+	0	NA	Intergenic	Intergenic	-70806	NM_007011	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
75310	chr15	65293671	65293830	+	0	NA	Intergenic	AluSz|SINE|Alu	-2301	NR_002756	26831		NR_002756	ENSG00000199568	RNU5A-1	RNU5|RNU5A|RNU5C|U5A|U5B1	RNA, U5A small nuclear 1	snRNA
54303	chr12	89440951	89441280	+	0	NA	intron (NM_172240, intron 10 of 11)	L1PA5|LINE|L1	83681	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
208782	chr7	73580051	73580150	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1521	NM_001362662	26608		NM_012453	ENSG00000106638	TBL2	WBSCR13|WS-betaTRP	transducin beta like 2	protein-coding
222781	chr8	141986251	141986550	+	0	NA	Intergenic	Intergenic	-189939	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
214028	chr7	143286421	143286880	+	0	NA	promoter-TSS (NR_133932)	promoter-TSS (NR_133932)	-316	NR_133932	105375545		NR_133932		TMEM139-AS1	-	TMEM139 antisense RNA 1	ncRNA
228663	chr9	107287251	107287850	+	0	NA	intron (NM_001244713, intron 1 of 9)	intron (NM_001244713, intron 1 of 9)	2781	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
104907	chr17	81901801	81902980	+	0	NA	exon (NM_148896, exon 1 of 2)	exon (NM_148896, exon 1 of 2)	152	NM_148896	256933		NM_148896	ENSG00000183979	NPB	L7|PPL7|PPNPB	neuropeptide B	protein-coding
203033	chr6	163956601	163956930	+	0	NA	Intergenic	Intergenic	-285281	NR_134620	102724152		NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA
41663	chr11	66561971	66562330	+	0	NA	exon (NM_001258371, exon 18 of 21)	exon (NM_001258371, exon 18 of 21)	6456	NM_003793	8722		NM_003793	ENSG00000174080	CTSF	CATSF|CLN13	cathepsin F	protein-coding
234909	chrX	32452251	32452450	+	0	NA	intron (NM_000109, intron 26 of 78)	(AAGGGA)n|Simple_repeat|Simple_repeat	-40122	NM_004011	1756		NM_000109	ENSG00000198947	DMD	BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85	dystrophin	protein-coding
16204	chr1	153867801	153868000	+	0	NA	intron (NM_020699, intron 1 of 10)	Charlie1a|DNA|hAT-Charlie	55072	NM_020699	57459		NM_020699	ENSG00000143614	GATAD2B	GANDS|MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding
25018	chr10	3510851	3510950	+	0	NA	intron (NR_131187, intron 1 of 1)	LTR49|LTR|ERV1	-8062	NR_155744	101927880		NR_155743	ENSG00000233321	LINC02669	-	long intergenic non-protein coding RNA 2669	ncRNA
120119	chr19	42190071	42190430	+	0	NA	Intergenic	Intergenic	27427	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
121501	chr19	47160371	47160600	+	0	NA	intron (NR_027280, intron 5 of 8)	AluY|SINE|Alu	29650	NM_005500	10055		NM_005500	ENSG00000142230	SAE1	AOS1|HSPC140|SUA1|UBLE1A	SUMO1 activating enzyme subunit 1	protein-coding
111554	chr19	4044551	4045380	+	0	NA	3' UTR (NM_001317990, exon 3 of 3)	3' UTR (NM_001317990, exon 3 of 3)	20564	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
193802	chr6	31431921	31432180	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-9617	NR_144465	101929111		NR_144465	ENSG00000230174	LINC01149	-	long intergenic non-protein coding RNA 1149	ncRNA
52680	chr12	56450751	56451050	+	0	NA	3' UTR (NM_012064, exon 4 of 4)	3' UTR (NM_012064, exon 4 of 4)	-1474	NM_003920	8914		NM_003920	ENSG00000111602	TIMELESS	FASPS4|TIM|TIM1|hTIM	timeless circadian regulator	protein-coding
87459	chr16	71426001	71426800	+	0	NA	promoter-TSS (NR_146574)	promoter-TSS (NR_146574)	64	NR_146574	105371333		NR_146574		LINC02136	-	long intergenic non-protein coding RNA 2136	ncRNA
150621	chr21	43379921	43380500	+	0	NA	Intergenic	Intergenic	-17861	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
44416	chr11	103958471	103958900	+	0	NA	intron (NM_025208, intron 3 of 6)	intron (NM_025208, intron 3 of 6)	-77955	NM_001001711	414301		NM_001001711	ENSG00000170967	DDI1	-	DNA damage inducible 1 homolog 1	protein-coding
53515	chr12	66776821	66777530	+	0	NA	intron (NM_001379351, intron 1 of 22)	L2a|LINE|L2	27094	NM_001379347	23426		NM_021150	ENSG00000155974	GRIP1	FRASRS3|GRIP	glutamate receptor interacting protein 1	protein-coding
36367	chr11	3948971	3949850	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	93348	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
20688	chr1	200535621	200535950	+	0	NA	Intergenic	Intergenic	83053	NM_001305792	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
81877	chr16	11674571	11674930	+	0	NA	intron (NM_003498, intron 1 of 1)	L2|LINE|L2	6295	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
41009	chr11	65422101	65424000	+	0	NA	non-coding (NR_028272, exon 1 of 1)	non-coding (NR_028272, exon 1 of 1)	252	NR_131012	283131		NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TP53LC15|TncRNA|VINC	nuclear paraspeckle assembly transcript 1	ncRNA
233080	chr9	137099321	137099780	+	0	NA	intron (NM_016219, intron 5 of 12)	intron (NM_016219, intron 5 of 12)	12565	NR_045721	11253		NM_016219	ENSG00000177239	MAN1B1	ERMAN1|ERManI|MANA-ER|MRT15	mannosidase alpha class 1B member 1	protein-coding
45001	chr11	116991801	116992000	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	106528	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
79911	chr16	1704121	1704530	+	0	NA	Intergenic	AluJr|SINE|Alu	-1870	NM_015133	23162		NM_015133	ENSG00000138834	MAPK8IP3	JIP-3|JIP3|JSAP1|NEDBA|SYD2|syd	mitogen-activated protein kinase 8 interacting protein 3	protein-coding
206988	chr7	38330891	38332000	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10132	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
112382	chr19	6063721	6063980	+	0	NA	intron (NM_000635, intron 1 of 17)	MER20|DNA|hAT-Charlie	46650	NM_000635	5990		NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
227306	chr9	89422251	89422980	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	57275	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
46732	chr11	128928401	128929000	+	0	NA	Intergenic	Intergenic	9134	NM_001195194	63970		NM_022112	ENSG00000120471	TP53AIP1	P53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein-coding
57676	chr12	122833301	122833680	+	0	NA	Intergenic	Intergenic	-1258	NM_001303099	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
43553	chr11	82970601	82970830	+	0	NA	Intergenic	LTR12C|LTR|ERV1	63559	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
106524	chr18	21100851	21101450	+	0	NA	intron (NM_005406, intron 1 of 32)	L1MC5a|LINE|L1	10663	NM_005406	6093		NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
7298	chr1	32399721	32399980	+	0	NA	Intergenic	MIRb|SINE|MIR	-5409	NM_001143889	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
122115	chr19	48806551	48807680	+	0	NA	intron (NM_001190, intron 1 of 10)	intron (NM_001190, intron 1 of 10)	3914	NM_001284325	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
203339	chr6	170271451	170272550	+	0	NA	promoter-TSS (NR_104177)	promoter-TSS (NR_104177)	-474	NR_104177	401289		NR_104177		LINC01624	-	long intergenic non-protein coding RNA 1624	ncRNA
177200	chr4	108342551	108343150	+	0	NA	Intergenic	Intergenic	170730	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
133337	chr2	113910021	113910730	+	0	NA	intron (NM_001277140, intron 1 of 11)	MER21B|LTR|ERVL	-19383	NR_110174	101060091		NR_110174		ACTR3-AS1	-	ACTR3 antisense RNA 1	ncRNA
128537	chr2	60806671	60807880	+	0	NA	Intergenic	Intergenic	51007	NM_022894	64895		NM_022894	ENSG00000115421	PAPOLG	-	poly(A) polymerase gamma	protein-coding
140620	chr2	233441251	233441730	+	0	NA	intron (NM_001377259, intron 7 of 27)	intron (NM_001377259, intron 7 of 27)	22278	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
173421	chr4	8198571	8199480	+	0	NA	promoter-TSS (NR_134639)	promoter-TSS (NR_134639)	-265	NR_134639	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
159812	chr3	16346771	16347330	+	0	NA	intron (NM_015150, intron 7 of 9)	intron (NM_015150, intron 7 of 9)	81838	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
119892	chr19	41548801	41549730	+	0	NA	promoter-TSS (NM_001288773)	promoter-TSS (NM_001288773)	-253	NM_001288773	90273		NM_033543	ENSG00000007129	CEACAM21	CEACAM3|R29124_1	CEA cell adhesion molecule 21	protein-coding
68963	chr14	91417201	91418500	+	0	NA	promoter-TSS (NM_001080414)	promoter-TSS (NM_001080414)	-30	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
237420	chrX	119632051	119632550	+	0	NA	intron (NM_145799, intron 8 of 10)	AluY|SINE|Alu	14548	NR_030413	768218		NR_030413	ENSG00000211578	MIR766	MIRN766|hsa-mir-766|mir-766	microRNA 766	ncRNA
233201	chr9	137216571	137217330	+	0	NA	3' UTR (NM_001144027, exon 13 of 13)	3' UTR (NM_001144027, exon 13 of 13)	4373	NM_031297	727800		NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
115647	chr19	16116021	16116280	+	0	NA	intron (NM_005370, intron 1 of 7)	L2a|LINE|L2	4261	NM_005370	4218		NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding
18589	chr1	165424321	165425300	+	0	NA	5' UTR (NM_001256571, exon 1 of 9)	5' UTR (NM_001256571, exon 1 of 9)	174	NM_001256571	6258		NM_006917	ENSG00000143171	RXRG	NR2B3|RXR-gamma|RXRC|RXRgamma	retinoid X receptor gamma	protein-coding
61795	chr13	75357701	75358250	+	0	NA	intron (NM_014832, intron 3 of 20)	intron (NM_014832, intron 3 of 20)	117387	NR_132375	106144536		NR_132375		LINC01078	-	long intergenic non-protein coding RNA 1078	ncRNA
185998	chr5	133824701	133825100	+	0	NA	Intergenic	Intergenic	-88777	NR_131252	105664404		NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
190039	chr5	177515451	177515750	+	0	NA	intron (NM_016222, intron 6 of 16)	intron (NM_016222, intron 6 of 16)	1361	NM_001321732	51428		NM_016222	ENSG00000183258	DDX41	ABS|MPLPF	DEAD-box helicase 41	protein-coding
96597	chr17	40535451	40535750	+	0	NA	Intergenic	MIRb|SINE|MIR	24794	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
136825	chr2	182713771	182714130	+	0	NA	Intergenic	L2|LINE|L2	-2307	NR_073366	54431		NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
182450	chr5	62315571	62316030	+	0	NA	intron (NM_001243952, intron 2 of 20)	intron (NM_001243952, intron 2 of 20)	9594	NM_001098511	3796		NM_004520	ENSG00000068796	KIF2A	CDCBM3|HK2|KIF2	kinesin family member 2A	protein-coding
5438	chr1	25571151	25571250	+	0	NA	Intergenic	Intergenic	27594	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
59192	chr13	22106471	22106830	+	0	NA	Intergenic	LTR62|LTR|ERVL	-103635	NR_103810	100506622		NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA
36678	chr11	8566701	8566930	+	0	NA	intron (NM_030906, intron 1 of 13)	intron (NM_030906, intron 1 of 13)	27161	NM_001352397	65975		NM_030906	ENSG00000130413	STK33	-	serine/threonine kinase 33	protein-coding
177081	chr4	108057671	108058030	+	0	NA	intron (NM_001130714, intron 9 of 9)	intron (NM_001130714, intron 9 of 9)	53186	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
74244	chr15	56906921	56907530	+	0	NA	intron (NR_015419, intron 2 of 3)	MamSINE1|SINE|tRNA-RTE	-10865	NM_001322151	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
129088	chr2	65115901	65116550	+	0	NA	intron (NM_004161, intron 1 of 5)	intron (NM_004161, intron 1 of 5)	13881	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
61760	chr13	74258901	74259100	+	0	NA	non-coding (NR_144451, exon 2 of 2)	non-coding (NR_144451, exon 2 of 2)	27556	NR_144451	100507612		NR_144451	ENSG00000235532	LINC00402	-	long intergenic non-protein coding RNA 402	ncRNA
157922	chr22	49779551	49780300	+	0	NA	intron (NR_146335, intron 9 of 13)	intron (NR_146335, intron 9 of 13)	44406	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
95174	chr17	35171321	35172980	+	0	NA	intron (NM_173167, intron 12 of 18)	intron (NM_173167, intron 12 of 18)	22243	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
209126	chr7	75070651	75071080	+	0	NA	intron (NM_148842, intron 1 of 10)	intron (NM_148842, intron 1 of 10)	2937	NM_030798	81554		NM_030798	ENSG00000274523	RCC1L	WBSCR16	RCC1 like	protein-coding
12341	chr1	101111601	101112600	+	0	NA	Intergenic	Intergenic	86254	NR_109849	102606465		NR_109849	ENSG00000233184	DPH5-DT	-	DPH5 divergent transcript	ncRNA
162285	chr3	47385421	47385680	+	0	NA	intron (NM_001304482, intron 1 of 23)	AluSz|SINE|Alu	4529	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
39656	chr11	61604621	61604750	+	0	NA	intron (NR_110189, intron 3 of 3)	AluY|SINE|Alu	-10351	NR_002775	113157		NR_002775	ENSG00000293352	RPLP0P2	RPLP0L2|RPLP0_3_1146	ribosomal protein lateral stalk subunit P0 pseudogene 2	pseudo
171163	chr3	195632001	195633230	+	0	NA	Intergenic	Intergenic	19544	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
109620	chr19	970351	971150	+	0	NA	intron (NM_005224, intron 8 of 8)	AluSg|SINE|Alu	-12178	NM_001372085	57418		NM_024100	ENSG00000065268	WDR18	Ipi3|R32184_1	WD repeat domain 18	protein-coding
48447	chr12	9730071	9730900	+	0	NA	intron (NM_172004, intron 1 of 1)	intron (NM_172004, intron 1 of 1)	2814	NM_001267701	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
94740	chr17	30790901	30791700	+	0	NA	non-coding (NR_144394, exon 9 of 9)	non-coding (NR_144394, exon 9 of 9)	33392	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
214539	chr7	150519951	150520480	+	0	NA	exon (NM_153236, exon 2 of 2)	exon (NM_153236, exon 2 of 2)	5343	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
160937	chr3	36897871	36898030	+	0	NA	intron (NM_014831, intron 3 of 22)	intron (NM_014831, intron 3 of 22)	47104	NM_014831	9881		NM_014831	ENSG00000168016	TRANK1	LBA1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding
219708	chr8	80991821	80992330	+	0	NA	intron (NM_018440, intron 4 of 8)	intron (NM_018440, intron 4 of 8)	-117294	NM_001033723	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
194812	chr6	34246151	34247300	+	0	NA	TTS (NM_001319081)	TTS (NM_001319081)	2281	NM_001008703	221491		NM_178508	ENSG00000186577	SMIM29	C6orf1|LBH	small integral membrane protein 29	protein-coding
15662	chr1	150889751	150890480	+	0	NA	intron (NM_001384189, intron 1 of 1)	L3|LINE|CR1	2862	NM_001384189	100996521		NM_001384189	ENSG00000283324	CTXND2	-	cortexin domain containing 2	protein-coding
26189	chr10	14543151	14544280	+	0	NA	intron (NM_031453, intron 2 of 4)	(A)n|Simple_repeat|Simple_repeat	4922	NM_001320739	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
54863	chr12	95545801	95546000	+	0	NA	intron (NM_001347936, intron 1 of 6)	intron (NM_001347936, intron 1 of 6)	2338	NM_001278393	84101		NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding
53613	chr12	68136321	68136580	+	0	NA	Intergenic	Intergenic	23290	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
106979	chr18	32019401	32021350	+	0	NA	intron (NM_017831, intron 1 of 5)	intron (NM_017831, intron 1 of 5)	1550	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
236977	chrX	101402451	101403150	+	0	NA	intron (NR_164783, intron 2 of 7)	MER31B|LTR|ERV1	5125	NM_000169	2717		NM_000169	ENSG00000102393	GLA	GALA	galactosidase alpha	protein-coding
128248	chr2	54557571	54559260	+	0	NA	promoter-TSS (NM_178313)	promoter-TSS (NM_178313)	21	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
217861	chr8	37833121	37833580	+	0	NA	intron (NM_032777, intron 9 of 18)	intron (NM_032777, intron 9 of 18)	16511	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
88811	chr16	87403401	87403830	+	0	NA	3' UTR (NM_022818, exon 4 of 4)	3' UTR (NM_022818, exon 4 of 4)	11279	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
103917	chr17	79822871	79823030	+	0	NA	promoter-TSS (NR_146504)	promoter-TSS (NR_146504)	-502	NR_146504	105371919		NR_146504		LINC01977	-	long intergenic non-protein coding RNA 1977	ncRNA
233919	chrX	1681101	1681330	+	0	NA	Intergenic	MER68|LTR|ERVL	66082	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
200881	chr6	138958121	138958800	+	0	NA	intron (NM_031922, intron 1 of 19)	L1PA8A|LINE|L1	29793	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
134381	chr2	136323371	136323530	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-205301	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
43655	chr11	85682301	85683100	+	0	NA	intron (NR_165401, intron 1 of 3)	MER115|DNA|hAT-Tip100	163	NR_165400	58487		NM_021212	ENSG00000137504	CREBZF	SMILE|ZF	CREB/ATF bZIP transcription factor	protein-coding
71419	chr14	105568271	105568430	+	0	NA	Intergenic	Intergenic	36495	NR_135205	105370697		NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA
75411	chr15	65768871	65769430	+	0	NA	intron (NM_001376919, intron 1 of 31)	L1ME3A|LINE|L1	23143	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
116795	chr19	18525271	18525430	+	0	NA	Intergenic	AluJb|SINE|Alu	-3280	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
156715	chr22	41783501	41783730	+	0	NA	intron (NM_152513, intron 24 of 30)	MIRb|SINE|MIR	-17064	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
131634	chr2	97048471	97048630	+	0	NA	Intergenic	Intergenic	46332	NM_199336	151313		NM_199336	ENSG00000144199	FAHD2B	-	fumarylacetoacetate hydrolase domain containing 2B	protein-coding
95322	chr17	35730451	35730880	+	0	NA	promoter-TSS (NM_033315)	promoter-TSS (NM_033315)	-974	NM_033315	91608		NM_033315	ENSG00000270885	RASL10B	RRP17|VTS58635	RAS like family 10 member B	protein-coding
88118	chr16	81575501	81575700	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-35748	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
163169	chr3	50173821	50174500	+	0	NA	intron (NM_001318798, intron 4 of 17)	intron (NM_001318798, intron 4 of 17)	15141	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
14524	chr1	144844821	144845080	+	0	NA	intron (NR_104189, intron 2 of 3).2	ERVL-B4-int|LTR|ERVL	126779	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
31229	chr10	91802521	91802780	+	0	NA	intron (NM_025235, intron 1 of 26)	intron (NM_025235, intron 1 of 26)	4224	NM_025235	80351		NM_025235	ENSG00000107854	TNKS2	ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6	tankyrase 2	protein-coding
35221	chr11	823571	823730	+	0	NA	intron (NM_020376, intron 6 of 9)	CpG	-4269	NM_001286606	283229		NM_173584	ENSG00000177685	CRACR2B	EFCAB4A	calcium release activated channel regulator 2B	protein-coding
85546	chr16	53130021	53132280	+	0	NA	intron (NM_001352127, intron 1 of 38)	CpG	138	NM_001382353	80205		NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
223063	chr8	143388151	143388450	+	0	NA	Intergenic	Intergenic	19424	NM_052924	114822		NM_052924	ENSG00000158106	RHPN1	ODF5|RHOPHILIN|RHPN	rhophilin Rho GTPase binding protein 1	protein-coding
208633	chr7	72990371	72990830	+	0	NA	Intergenic	Intergenic	15343	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
74006	chr15	52134751	52135050	+	0	NA	intron (NM_001379343, intron 6 of 10)	intron (NM_001379343, intron 6 of 10)	-22125	NM_001306168	10017		NM_020396	ENSG00000137875	BCL2L10	BCL-B|Boo|Diva|bcl2-L-10	BCL2 like 10	protein-coding
129972	chr2	73987491	73988730	+	0	NA	intron (NM_001287491, intron 2 of 11)	intron (NM_001287491, intron 2 of 11)	3200	NM_001287491	200424		NM_001287491	ENSG00000187605	TET3	BEFAHRS|hCG_40738	tet methylcytosine dioxygenase 3	protein-coding
84579	chr16	30635671	30636500	+	0	NA	Intergenic	AluSq2|SINE|Alu	-14693	NM_001320464	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
179546	chr4	185115971	185116230	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-27166	NM_001151	291		NM_001151	ENSG00000151729	SLC25A4	AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1	solute carrier family 25 member 4	protein-coding
80492	chr16	2712721	2713030	+	0	NA	intron (NM_001318395, intron 4 of 4)	intron (NM_001318395, intron 4 of 4)	7349	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
3350	chr1	15522401	15523080	+	0	NA	intron (NM_032996, intron 1 of 8)	intron (NM_032996, intron 1 of 8)	1475	NM_001229	842		NM_001229	ENSG00000132906	CASP9	APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56	caspase 9	protein-coding
206072	chr7	27173251	27174480	+	0	NA	exon (NM_018951, exon 1 of 2)	exon (NM_018951, exon 1 of 2)	455	NM_018951	3206		NM_018951	ENSG00000253293	HOXA10	HOX1|HOX1.8|HOX1H|PL	homeobox A10	protein-coding
133012	chr2	111698821	111699410	+	0	NA	Intergenic	L1ME4a|LINE|L1	72019	NR_039929	100616165		NR_039929	ENSG00000266063	MIR4771-2	-	microRNA 4771-2	ncRNA
170678	chr3	187741901	187743260	+	0	NA	intron (NM_001706, intron 1 of 9)	intron (NM_001706, intron 1 of 9)	2888	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
212310	chr7	126803251	126803350	+	0	NA	intron (NM_001371083, intron 7 of 11)	intron (NM_001371083, intron 7 of 11)	254884	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
217955	chr8	38229871	38230030	+	0	NA	Intergenic	Intergenic	-1541	NR_156416	23259		NM_015214	ENSG00000085788	DDHD2	SAMWD1|SPG54|iPLA(1)gamma|iPLA1A|iPLA1gamma|p125B	DDHD domain containing 2	protein-coding
38130	chr11	35256571	35256730	+	0	NA	3' UTR (NM_001252652, exon 12 of 12)	3' UTR (NM_001252652, exon 12 of 12)	93700	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
139722	chr2	228866851	228866950	+	0	NA	Intergenic	MER52D|LTR|ERV1	-255505	NR_151716	101928765		NR_151716	ENSG00000232023	LINC01807	-	long intergenic non-protein coding RNA 1807	ncRNA
76282	chr15	74129801	74130850	+	0	NA	promoter-TSS (NM_020851)	promoter-TSS (NM_020851)	76	NM_001130138	57611		NM_020851	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine rich repeat 2	protein-coding
34694	chr10	133393901	133395300	+	0	NA	intron (NM_138384, intron 1 of 10)	intron (NM_138384, intron 1 of 10)	443	NM_138384	92170		NM_138384	ENSG00000148824	MTG1	GTP|GTPBP7	mitochondrial ribosome associated GTPase 1	protein-coding
208734	chr7	73436201	73436600	+	0	NA	TTS (NM_003508)	TTS (NM_003508)	2622	NM_003508	8326		NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding
73628	chr15	44633101	44633830	+	0	NA	intron (NM_025137, intron 8 of 39)	intron (NM_025137, intron 8 of 39)	30197	NM_001160227	80208		NM_025137	ENSG00000104133	SPG11	ALS5|CMT2X|KIAA1840	SPG11 vesicle trafficking associated, spatacsin	protein-coding
176994	chr4	105184621	105184880	+	0	NA	intron (NR_126420, intron 2 of 5)	(GT)n|Simple_repeat|Simple_repeat	37874	NM_001127208	54790		NM_017628	ENSG00000168769	TET2	IMD75|KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding
169173	chr3	156681901	156682100	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	5336	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
40464	chr11	64224171	64224500	+	0	NA	TTS (NM_001382364)	TTS (NM_001382364)	1534	NM_001160393	83707		NM_031472	ENSG00000149743	TRPT1	-	tRNA phosphotransferase 1	protein-coding
229079	chr9	114359171	114359680	+	0	NA	intron (NM_001317952, intron 10 of 20)	MER113|DNA|hAT-Charlie	28557	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
217605	chr8	29735171	29735350	+	0	NA	intron (NR_026765, intron 1 of 3)	MIR|SINE|MIR	12849	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
131733	chr2	98384951	98385380	+	0	NA	intron (NM_001298, intron 5 of 7)	intron (NM_001298, intron 5 of 7)	38709	NM_001298	1261		NM_001298	ENSG00000144191	CNGA3	ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3	cyclic nucleotide gated channel subunit alpha 3	protein-coding
226727	chr9	75265571	75265730	+	0	NA	Intergenic	Intergenic	177136	NM_012383	26578		NM_012383	ENSG00000134996	OSTF1	OSF|SH3P2|bA235O14.1	osteoclast stimulating factor 1	protein-coding
153478	chr22	25736251	25737080	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-5523	NM_032608	84700		NM_032608	ENSG00000133454	MYO18B	KFS4	myosin XVIIIB	protein-coding
28303	chr10	46218651	46219050	+	0	NA	TTS (NR_103827)	TTS (NR_103827)	50758	NR_103828	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
30179	chr10	74244021	74244400	+	0	NA	intron (NM_001369123, intron 3 of 9)	intron (NM_001369123, intron 3 of 9)	67447	NM_001369124	132		NM_001123	ENSG00000156110	ADK	AK	adenosine kinase	protein-coding
70906	chr14	104083951	104084250	+	0	NA	Intergenic	AluSx|SINE|Alu	-1600	NM_001080464	374569		NM_001080464	ENSG00000166183	ASPG	C14orf76|GPA/WT|LYSOLP|hASNase1	asparaginase	protein-coding
25326	chr10	6229321	6229730	+	0	NA	intron (NM_001314063, intron 15 of 15)	intron (NM_001314063, intron 15 of 15)	26593	NM_001323017	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
161148	chr3	39047821	39048280	+	0	NA	intron (NR_164473, intron 1 of 2)	L1MA5|LINE|L1	3894	NR_164473	11280		NM_014139	ENSG00000168356	SCN11A	FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2	sodium voltage-gated channel alpha subunit 11	protein-coding
12440	chr1	107139851	107140500	+	0	NA	promoter-TSS (NM_001330665)	promoter-TSS (NM_001330665)	87	NM_014917	22854		NM_014917	ENSG00000162631	NTNG1	Lmnt1|NetG1|NetrinG1	netrin G1	protein-coding
195448	chr6	36978501	36978800	+	0	NA	intron (NM_001271641, intron 2 of 11)	intron (NM_001271641, intron 2 of 11)	7546	NM_001271641	23787		NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
67268	chr14	69149101	69149300	+	0	NA	intron (NM_001284208, intron 1 of 6)	MIRb|SINE|MIR	3399	NM_001284207	8816		NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
9514	chr1	51343921	51344180	+	0	NA	intron (NM_001144832, intron 1 of 17)	L2|LINE|L2	1066	NM_001144832	22996		NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding
122054	chr19	48660701	48661980	+	0	NA	TTS (NM_145807)	TTS (NM_145807)	11677	NM_145807	126147		NM_145807	ENSG00000142233	NTN5	-	netrin 5	protein-coding
202500	chr6	158438941	158439050	+	0	NA	intron (NM_001007466, intron 3 of 12)	AluSc8|SINE|Alu	-97645	NM_020823	57583		NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding
112001	chr19	4972171	4972330	+	0	NA	intron (NM_001370093, intron 1 of 11)	MIRb|SINE|MIR	3137	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
101780	chr17	73189551	73189850	+	0	NA	Intergenic	Intergenic	-3355	NM_018714	9382		NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding
180008	chr5	1002651	1003800	+	0	NA	Intergenic	Intergenic	-5577	NM_033120	85409		NM_033120	ENSG00000145506	NKD2	Naked2	NKD inhibitor of WNT signaling pathway 2	protein-coding
112334	chr19	5914701	5915600	+	0	NA	TTS (NM_007322)	TTS (NM_007322)	896	NM_080590	828		NM_004058	ENSG00000105519	CAPS	CAPS1	calcyphosine	protein-coding
7427	chr1	32964501	32965430	+	0	NA	promoter-TSS (NM_153341)	promoter-TSS (NM_153341)	-156	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
29709	chr10	72071271	72071850	+	0	NA	intron (NM_014767, intron 5 of 11)	intron (NM_014767, intron 5 of 11)	16991	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
49686	chr12	30757451	30757750	+	0	NA	intron (NR_135046, intron 1 of 1)	intron (NR_135046, intron 1 of 1)	2526	NR_135046	645485		NR_135046	ENSG00000246331	LOC645485	-	uncharacterized LOC645485	ncRNA
136238	chr2	174603001	174603650	+	0	NA	intron (NM_001077269, intron 1 of 7)	MLT1K|LTR|ERVL-MaLR	-5094	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
167253	chr3	128572601	128573600	+	0	NA	non-coding (NR_125802, exon 3 of 3)	non-coding (NR_125802, exon 3 of 3)	2986	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
145085	chr20	38675871	38676950	+	0	NA	Intergenic	MIR|SINE|MIR	-48076	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
170351	chr3	184564621	184564880	+	0	NA	intron (NM_004443, intron 1 of 15)	intron (NM_004443, intron 1 of 15)	2965	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
221348	chr8	123239571	123239730	+	0	NA	intron (NM_001204180, intron 2 of 5)	intron (NM_001204180, intron 2 of 5)	1727	NM_032847	84933		NM_032847	ENSG00000189376	C8orf76	-	chromosome 8 open reading frame 76	protein-coding
144483	chr20	35634071	35634700	+	0	NA	intron (NM_152926, intron 1 of 15)	AluSx1|SINE|Alu	18501	NM_001317931	6676		NM_003116	ENSG00000061656	SPAG4	CT127|SUN4	sperm associated antigen 4	protein-coding
17533	chr1	156778701	156779130	+	0	NA	intron (NM_005973, intron 1 of 6)	AluSq2|SINE|Alu	11380	NM_005973	5546		NM_005973	ENSG00000143294	PRCC	RCCP1|TPRC	proline rich mitotic checkpoint control factor	protein-coding
190528	chr5	180646721	180647180	+	0	NA	intron (NM_001354989, intron 1 of 29)	intron (NM_001354989, intron 1 of 29)	2650	NM_001354989	2324		NM_002020	ENSG00000037280	FLT4	CHTD7|FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3	fms related receptor tyrosine kinase 4	protein-coding
229373	chr9	121076901	121077100	+	0	NA	intron (NM_001369894, intron 1 of 29)	intron (NM_001369894, intron 1 of 29)	2045	NM_001369896	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
176129	chr4	83106221	83106480	+	0	NA	intron (NM_016619, intron 2 of 4)	AluSz|SINE|Alu	3539	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
81608	chr16	10553001	10553550	+	0	NA	intron (NM_001424, intron 1 of 4)	L1ME4b|LINE|L1	-25077	NR_149081	106144584		NR_149081	ENSG00000260468	LINC01290	-	long intergenic non-protein coding RNA 1290	ncRNA
52814	chr12	56931501	56931730	+	0	NA	intron (NM_148897, intron 1 of 3)	intron (NM_148897, intron 1 of 3)	2793	NM_148897	121214		NM_148897	ENSG00000170426	SDR9C7	ARCI13|RDHS|SDR-O|SDRO	short chain dehydrogenase/reductase family 9C member 7	protein-coding
16046	chr1	152458371	152459030	+	0	NA	Intergenic	Intergenic	-44437	NM_016190	49860		NM_016190	ENSG00000143536	CRNN	C1orf10|DRC1|PDRC1|SEP53	cornulin	protein-coding
108710	chr18	77073571	77074630	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	-57045	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
234211	chrX	12969601	12969800	+	0	NA	Intergenic	AluSc8|SINE|Alu	-5410	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
143776	chr20	32437621	32438330	+	0	NA	3' UTR (NM_001363734, exon 11 of 11)	3' UTR (NM_001363734, exon 11 of 11)	45515	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
224553	chr9	19379521	19381200	+	0	NA	promoter-TSS (NM_001010)	promoter-TSS (NM_001010)	-124	NM_001010	6194		NM_001010	ENSG00000137154	RPS6	S6|eS6	ribosomal protein S6	protein-coding
155205	chr22	37842851	37842950	+	0	NA	intron (NM_001349853, intron 1 of 7)	MIRb|SINE|MIR	948	NM_001363839	129138		NM_138797	ENSG00000100124	ANKRD54	LIAR	ankyrin repeat domain 54	protein-coding
238680	chrX	154045501	154045700	+	0	NA	intron (NM_001369393, intron 1 of 3)	AluSx3|SINE|Alu	-25611	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
33583	chr10	119500601	119501030	+	0	NA	intron (NM_002925, intron 4 of 4)	intron (NM_002925, intron 4 of 4)	35718	NM_002925	6001		NM_002925	ENSG00000148908	RGS10	-	regulator of G protein signaling 10	protein-coding
192906	chr6	27600401	27601200	+	0	NA	Intergenic	AluSg|SINE|Alu	-93235	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
52037	chr12	54005851	54006800	+	0	NA	Intergenic	CpG	-2660	NM_022658	3224		NM_022658	ENSG00000037965	HOXC8	HOX3|HOX3A	homeobox C8	protein-coding
186515	chr5	138349371	138350000	+	0	NA	TTS (NM_001350195)	TTS (NM_001350195)	-3000	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
36807	chr11	9615251	9615350	+	0	NA	Intergenic	Intergenic	40613	NM_001143976	7465		NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding
138186	chr2	202654671	202654830	+	0	NA	intron (NM_173511, intron 1 of 7)	intron (NM_173511, intron 1 of 7)	19781	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
41590	chr11	66349901	66350100	+	0	NA	intron (NR_135761, intron 1 of 1)	AluSp|SINE|Alu	2009	NR_135761	102724064		NR_135761	ENSG00000255468	B4GAT1-DT	-	B4GAT1 divergent transcript	ncRNA
146686	chr20	50528471	50529350	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	18527	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
47148	chr12	759401	760100	+	0	NA	intron (NM_018979, intron 1 of 27)	MIR|SINE|MIR	6827	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
56124	chr12	110846621	110847130	+	0	NA	promoter-TSS (NM_001286244)	promoter-TSS (NM_001286244)	-112	NM_001286244	160762		NM_152591	ENSG00000173093	CCDC63	ODA5	coiled-coil domain containing 63	protein-coding
112280	chr19	5821671	5821830	+	0	NA	intron (NM_004558, intron 1 of 2)	intron (NM_004558, intron 1 of 2)	16683	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
105893	chr18	3271351	3271450	+	0	NA	intron (NM_001144945, intron 1 of 3)	intron (NM_001144945, intron 1 of 3)	8681	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
192656	chr6	26183221	26184630	+	0	NA	exon (NM_003523, exon 1 of 1)	exon (NM_003523, exon 1 of 1)	164	NM_003523	8344		NM_003523	ENSG00000274290	H2BC6	H2B.h|H2B/h|H2BC10|H2BC4|H2BC7|H2BC8|H2BFH|HIST1H2BE|dJ221C16.8	H2B clustered histone 6	protein-coding
238569	chrX	153821401	153821690	+	0	NA	intron (NM_032512, intron 1 of 7)	intron (NM_032512, intron 1 of 7)	8414	NM_001303516	57595		NM_032512	ENSG00000067840	PDZD4	LNX5|LU1|PDZK4|PDZRN4L	PDZ domain containing 4	protein-coding
223369	chr8	143878271	143879100	+	0	NA	promoter-TSS (NM_031308)	promoter-TSS (NM_031308)	-218	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
108567	chr18	74990671	74991430	+	0	NA	intron (NM_001384475, intron 8 of 8)	intron (NM_001384475, intron 8 of 8)	214463	NM_001306093	284273		NM_175907	ENSG00000180011	PTGR3	PRG-3|PTGR-3|ZADH2	prostaglandin reductase 3	protein-coding
131116	chr2	90298021	90298380	+	0	NA	Intergenic	(CCAAGCCAG)n|Simple_repeat|Simple_repeat	-660293	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
87417	chr16	70678801	70679430	+	0	NA	intron (NM_138383, intron 7 of 14)	intron (NM_138383, intron 7 of 14)	6938	NM_138383	92154		NM_138383	ENSG00000132613	MTSS2	ABBA|ABBA-1|ABBA1|IDDOF|MTSS1L	MTSS I-BAR domain containing 2	protein-coding
66231	chr14	61332451	61333100	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	11332	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
41565	chr11	66326301	66327080	+	0	NA	Intergenic	Intergenic	-9646	NM_020404	57124		NM_020404	ENSG00000174807	CD248	CD164L1|TEM1	CD248 molecule	protein-coding
231610	chr9	131564421	131564980	+	0	NA	Intergenic	AluJo|SINE|Alu	19177	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
8799	chr1	42931801	42933080	+	0	NA	intron (NM_006516, intron 2 of 9)	intron (NM_006516, intron 2 of 9)	26428	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
222257	chr8	133252571	133252930	+	0	NA	intron (NM_001374844, intron 9 of 15)	intron (NM_001374844, intron 9 of 15)	43940	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
2838	chr1	11099251	11100150	+	0	NA	promoter-TSS (NR_135061)	promoter-TSS (NR_135061)	25	NR_135062	105376736		NR_135061	ENSG00000230337	EXOSC10-AS1	-	EXOSC10 antisense RNA 1	ncRNA
177302	chr4	109640071	109640700	+	0	NA	intron (NM_017918, intron 1 of 7)	Tigger1|DNA|TcMar-Tigger	63060	NM_032992	839		NM_001226	ENSG00000138794	CASP6	CSP-6|MCH2|caspase-6	caspase 6	protein-coding
70337	chr14	101846651	101847000	+	0	NA	intron (NM_001352916, intron 2 of 13)	intron (NM_001352916, intron 2 of 13)	36962	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
232493	chr9	136256051	136256730	+	0	NA	intron (NM_001378188, intron 23 of 25)	intron (NM_001378188, intron 23 of 25)	-10578	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
47841	chr12	6607201	6608000	+	0	NA	promoter-TSS (NM_001363606)	promoter-TSS (NM_001363606)	-221	NM_001273	1108		NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding
70139	chr14	100280871	100281030	+	0	NA	3' UTR (NM_003403, exon 5 of 5)	3' UTR (NM_003403, exon 5 of 5)	3593	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
64727	chr14	34508071	34508230	+	0	NA	Intergenic	Ricksha_b|DNA|MULE-MuDR	31551	NM_018453	55837		NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding
134506	chr2	143395501	143395900	+	0	NA	intron (NM_018460, intron 6 of 13)	L2b|LINE|L2	266281	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
225158	chr9	33813521	33814550	+	0	NA	Intergenic	Intergenic	-3125	NM_017811	54926		NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding
4644	chr1	22131771	22132550	+	0	NA	intron (NM_030761, intron 1 of 4)	intron (NM_030761, intron 1 of 4)	10937	NM_030761	54361		NM_030761	ENSG00000162552	WNT4	SERKAL|WNT-4	Wnt family member 4	protein-coding
132385	chr2	105775901	105776930	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	31352	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
23690	chr1	231527821	231529070	+	0	NA	promoter-TSS (NR_028399)	promoter-TSS (NR_028399)	-208	NR_028394	100303453		NR_028393	ENSG00000270106	TSNAX-DISC1	-	TSNAX-DISC1 readthrough (NMD candidate)	ncRNA
38721	chr11	46682001	46682450	+	0	NA	intron (NM_004308, intron 4 of 12)	intron (NM_004308, intron 4 of 12)	18394	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
50362	chr12	47205821	47206430	+	0	NA	intron (NM_001281429, intron 2 of 2)	LTR8|LTR|ERV1	10318	NR_026544	100233209		NR_026544	ENSG00000247774	PCED1B-AS1	-	PCED1B antisense RNA 1	ncRNA
140594	chr2	233383721	233383980	+	0	NA	intron (NM_152879, intron 1 of 29)	L1ME4a|LINE|L1	-4304	NM_003648	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
236808	chrX	79161371	79162330	+	0	NA	intron (NM_032553, intron 2 of 2)	intron (NM_032553, intron 2 of 2)	17162	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
130083	chr2	74498501	74500000	+	0	NA	intron (NM_001009812, intron 1 of 1)	CpG	353	NM_001282430	85474		NM_001009812	ENSG00000179528	LBX2	LP3727	ladybird homeobox 2	protein-coding
106690	chr18	23269051	23269350	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	113375	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
229046	chr9	114333801	114334000	+	0	NA	TTS (NM_000608)	TTS (NM_000608)	4031	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
149217	chr21	25462521	25463300	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-31209	NR_024027	54072		NM_058184	ENSG00000185433	LINC00158	C21orf42|NCRNA00158	long intergenic non-protein coding RNA 158	ncRNA
206196	chr7	28194771	28195130	+	0	NA	intron (NR_034097, intron 2 of 3)	intron (NR_034097, intron 2 of 3)	-14155	NM_175061	221895		NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding
86905	chr16	68064471	68065630	+	0	NA	intron (NM_001271763, intron 6 of 14)	intron (NM_001271763, intron 6 of 14)	-20320	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
90236	chr17	732021	733530	+	0	NA	intron (NM_024792, intron 1 of 4)	CpG	179	NM_024792	79850		NM_024792	ENSG00000167695	TLCD3A	CT120|FAM57A	TLC domain containing 3A	protein-coding
37542	chr11	18695971	18696130	+	0	NA	Intergenic	AluSx|SINE|Alu	-2729	NM_153347	144110		NM_153347	ENSG00000151117	TMEM86A	-	transmembrane protein 86A	protein-coding
139895	chr2	230711151	230711450	+	0	NA	Intergenic	L2a|LINE|L2	-1542	NM_016289	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
23665	chr1	231240421	231242280	+	0	NA	promoter-TSS (NM_152379)	promoter-TSS (NM_152379)	138	NM_001316350	8443		NM_014236	ENSG00000116906	GNPAT	DAP-AT|DAPAT|DHAPAT|RCDP2	glyceronephosphate O-acyltransferase	protein-coding
24815	chr10	246201	246800	+	0	NA	intron (NM_212479, intron 10 of 13)	intron (NM_212479, intron 10 of 13)	66506	NM_001202468	10771		NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding
78170	chr15	90493751	90493850	+	0	NA	intron (NM_003870, intron 35 of 37)	L1MC4|LINE|L1	-36123	NM_001042574	64784		NM_022769	ENSG00000140577	CRTC3	TORC-3|TORC3	CREB regulated transcription coactivator 3	protein-coding
200014	chr6	129498901	129500030	+	0	NA	intron (NM_000426, intron 58 of 64)	intron (NM_000426, intron 58 of 64)	210712	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
37054	chr11	12223901	12225630	+	0	NA	exon (NM_001346292, exon 12 of 27)	exon (NM_001346292, exon 12 of 27)	61082	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
165671	chr3	101861171	101862530	+	0	NA	TTS (NM_001005474)	TTS (NM_001005474)	12336	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
25096	chr10	3890601	3891000	+	0	NA	Intergenic	Intergenic	56850	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
179579	chr4	185255671	185256850	+	0	NA	intron (NM_001378032, intron 2 of 19)	intron (NM_001378032, intron 2 of 19)	46703	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
72062	chr15	28875201	28875400	+	0	NA	Intergenic	Intergenic	-10674	NM_001353789	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
97687	chr17	44310471	44310630	+	0	NA	intron (NM_001144825, intron 1 of 10)	intron (NM_001144825, intron 1 of 10)	1949	NM_001144825	10900		NM_006695	ENSG00000108309	RUNDC3A	RAP2IP|RPIP-8|RPIP8	RUN domain containing 3A	protein-coding
185186	chr5	119367451	119368000	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	11706	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
174359	chr4	38805671	38806200	+	0	NA	Intergenic	Intergenic	-1144	NM_003263	7096		NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll like receptor 1	protein-coding
193314	chr6	30111321	30111780	+	0	NA	intron (NR_134870, intron 3 of 9)	intron (NR_134870, intron 3 of 9)	1540	NR_134870	11074		NM_007028	ENSG00000204616	TRIM31	C6orf13|HCG1|HCGI|RNF	tripartite motif containing 31	protein-coding
141796	chr20	266671	267500	+	0	NA	Intergenic	Intergenic	9361	NM_207469	400830		NM_207469	ENSG00000186458	DEFB132	BD-32|DEFB-32|DEFB32|HEL-75|KFLL827|UNQ827	defensin beta 132	protein-coding
109594	chr19	922921	923180	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2985	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
163237	chr3	50268771	50269530	+	0	NA	promoter-TSS (NM_001290060)	promoter-TSS (NM_001290060)	3	NM_001290060	7869		NM_004636	ENSG00000012171	SEMA3B	LUCA-1|SEMA5|SEMAA|SemA|semaV	semaphorin 3B	protein-coding
38883	chr11	47390621	47390880	+	0	NA	Intergenic	Intergenic	-10220	NR_039707	100616222		NR_039707	ENSG00000264583	MIR4487	mir-4487	microRNA 4487	ncRNA
151466	chr21	46225071	46225630	+	0	NA	intron (NM_001145437, intron 2 of 20)	LTR13|LTR|ERVK	3424	NM_002340	4047		NM_002340	ENSG00000160285	LSS	APMR4|CTRCT44|HYPT14|OSC	lanosterol synthase	protein-coding
7475	chr1	33130101	33130780	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	46110	NM_001330483	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
146263	chr20	48938871	48939230	+	0	NA	intron (NM_006420, intron 1 of 38)	AluSg|SINE|Alu	17339	NM_006420	10564		NM_006420	ENSG00000124198	ARFGEF2	BIG2|PVNH2|dJ1164I10.1	ADP ribosylation factor guanine nucleotide exchange factor 2	protein-coding
230219	chr9	127854651	127855150	+	0	NA	promoter-TSS (NM_000118)	promoter-TSS (NM_000118)	-127	NM_000118	2022		NM_000118	ENSG00000106991	ENG	END|HHT1|ORW1	endoglin	protein-coding
59074	chr13	20903951	20904130	+	0	NA	Intergenic	AluJb|SINE|Alu	-1266	NM_022459	64328		NM_022459	ENSG00000132953	XPO4	exp4	exportin 4	protein-coding
116822	chr19	18562171	18562530	+	0	NA	intron (NM_001171948, intron 3 of 5)	intron (NM_001171948, intron 3 of 5)	4480	NM_024069	79036		NM_024069	ENSG00000105700	KXD1	BORCS4|C10orf50|C19orf50|KXDL|MST096|MSTP096	KxDL motif containing 1	protein-coding
19469	chr1	174968671	174969230	+	0	NA	intron (NM_001243764, intron 1 of 6)	intron (NM_001243764, intron 1 of 6)	4172	NM_001243764	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
100217	chr17	59208551	59208650	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-1410	NM_018149	55181		NM_018149	ENSG00000167447	SMG8	ALKUS|C17orf71	SMG8 nonsense mediated mRNA decay factor	protein-coding
207700	chr7	45919751	45920100	+	0	NA	intron (NM_000598, intron 1 of 4)	intron (NM_000598, intron 1 of 4)	1347	NM_001013398	3486		NM_000598	ENSG00000146674	IGFBP3	BP-53|IBP-3|IBP3|IGFBP-3	insulin like growth factor binding protein 3	protein-coding
164757	chr3	69084301	69085800	+	0	NA	exon (NM_006407, exon 1 of 3)	exon (NM_006407, exon 1 of 3)	113	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
20232	chr1	193186121	193186980	+	0	NA	promoter-TSS (NM_003783)	promoter-TSS (NM_003783)	63	NM_003783	8707		NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding
212163	chr7	116865821	116866280	+	0	NA	intron (NM_006136, intron 1 of 9)	intron (NM_006136, intron 1 of 9)	3463	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
20454	chr1	198554601	198554800	+	0	NA	Intergenic	Intergenic	-13755	NM_133326	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
43722	chr11	86049621	86050150	+	0	NA	intron (NM_001206947, intron 1 of 18)	intron (NM_001206947, intron 1 of 18)	19199	NM_001008660	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
71843	chr15	22224051	22224850	+	0	NA	TTS (NR_031672)	TTS (NR_031672)	879	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
173563	chr4	10098501	10100300	+	0	NA	intron (NM_017491, intron 3 of 14)	intron (NM_017491, intron 3 of 14)	17399	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
184973	chr5	113509921	113510180	+	0	NA	Intergenic	Intergenic	-3644	NM_022828	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
106946	chr18	28177451	28177550	+	0	NA	promoter-TSS (NM_001792)	promoter-TSS (NM_001792)	-370	NM_001792	1000		NM_001792	ENSG00000170558	CDH2	ACOGS|ADHD8|ARVD14|CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
122440	chr19	49481151	49482830	+	0	NA	intron (NM_001278637, intron 8 of 8)	AluSx1|SINE|Alu	-5564	NM_001270491	23521		NM_012423	ENSG00000142541	RPL13A	L13A|TSTA1|uL13	ribosomal protein L13a	protein-coding
65685	chr14	52716701	52717300	+	0	NA	intron (NR_158967, intron 7 of 14)	L1MA7|LINE|L1	9800	NM_002806	5706		NM_002806	ENSG00000100519	PSMC6	RPT5|SUG2|p42	proteasome 26S subunit, ATPase 6	protein-coding
170857	chr3	191417051	191417230	+	0	NA	Intergenic	Intergenic	-8384	NR_120606	103344926		NR_120606		PYDC2-AS1	LINCR-0002	PYDC2 antisense RNA 1	ncRNA
183826	chr5	83721851	83722400	+	0	NA	Intergenic	CpG	-1270	NM_001884	1404		NM_001884	ENSG00000145681	HAPLN1	CRT1|CRTL1	hyaluronan and proteoglycan link protein 1	protein-coding
95092	chr17	34361451	34361750	+	0	NA	intron (NM_002981, intron 2 of 2)	intron (NM_002981, intron 2 of 2)	1633	NM_002981	6346		NM_002981	ENSG00000108702	CCL1	I-309|P500|SCYA1|SISe|TCA3	C-C motif chemokine ligand 1	protein-coding
141768	chr2	242011151	242012050	+	0	NA	intron (NR_110220, intron 3 of 3)	intron (NR_110220, intron 3 of 3)	10391	NR_149023	285097		NM_178530	ENSG00000280119	LOC285097	-	uncharacterized FLJ38379	ncRNA
158695	chr3	5239201	5239630	+	0	NA	Intergenic	Intergenic	10840	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
118615	chr19	36847871	36848330	+	0	NA	intron (NM_001242800, intron 1 of 4)	MER21C|LTR|ERVL	2167	NM_001242801	388536		NM_206894	ENSG00000197863	ZNF790	-	zinc finger protein 790	protein-coding
178282	chr4	144792051	144792150	+	0	NA	Intergenic	L1P1|LINE|L1	145944	NM_022475	64399		NM_022475	ENSG00000164161	HHIP	HIP	hedgehog interacting protein	protein-coding
111418	chr19	3779401	3780080	+	0	NA	exon (NM_002378, exon 9 of 14)	exon (NM_002378, exon 9 of 14)	6641	NM_139355	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
151498	chr21	46354951	46356130	+	0	NA	exon (NM_001315529, exon 12 of 47)	exon (NM_001315529, exon 12 of 47)	30873	NM_001315529	5116		NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
98314	chr17	46250321	46250850	+	0	NA	Intergenic	MLT2A1|LTR|ERVL	-25218	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
73446	chr15	43285571	43286200	+	0	NA	intron (NM_052955, intron 6 of 12)	intron (NM_052955, intron 6 of 12)	16370	NM_052955	116179		NM_052955	ENSG00000159495	TGM7	TGMZ	transglutaminase 7	protein-coding
159304	chr3	12994501	12995800	+	0	NA	intron (NM_001134382, intron 1 of 13)	CpG	-8049	NM_001330619	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
60015	chr13	32532621	32532880	+	0	NA	intron (NM_001278432, intron 2 of 9)	AluSc|SINE|Alu	6045	NM_014887	10443		NM_014887	ENSG00000244754	N4BP2L2	92M18.3|CG005|CG016|PFAAP5	NEDD4 binding protein 2 like 2	protein-coding
30377	chr10	78036051	78036950	+	0	NA	intron (NM_033022, intron 3 of 5)	AluSg|SINE|Alu	2637	NM_001142285	6229		NM_001026	ENSG00000138326	RPS24	DBA3|S24|eS24	ribosomal protein S24	protein-coding
101852	chr17	74200801	74201200	+	0	NA	Intergenic	Intergenic	-2678	NM_000999	6169		NM_000999	ENSG00000172809	RPL38	L38|eL38	ribosomal protein L38	protein-coding
175455	chr4	71338821	71339200	+	0	NA	promoter-TSS (NM_003759)	promoter-TSS (NM_003759)	-10	NM_003759	8671		NM_003759	ENSG00000080493	SLC4A4	HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC	solute carrier family 4 member 4	protein-coding
83511	chr16	27445951	27447350	+	0	NA	intron (NM_181078, intron 8 of 8)	intron (NM_181078, intron 8 of 8)	6743	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
174053	chr4	26888151	26888250	+	0	NA	intron (NM_020860, intron 1 of 11)	ERVL-B4-int|LTR|ERVL	27359	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
178913	chr4	158735151	158735250	+	0	NA	Intergenic	(ACACAC)n|Simple_repeat|Simple_repeat	-11804	NM_005038	5481		NM_005038	ENSG00000171497	PPID	CYP-40|CYPD	peptidylprolyl isomerase D	protein-coding
159031	chr3	11094751	11094850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-42438	NM_001098213	3269		NM_000861	ENSG00000196639	HRH1	H1-R|H1R|HH1R|hisH1	histamine receptor H1	protein-coding
232215	chr9	134367171	134367530	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-11945	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
189261	chr5	172049371	172049530	+	0	NA	intron (NM_005990, intron 18 of 18)	L2b|LINE|L2	-42812	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
124477	chr19	58550471	58552680	+	0	NA	TTS (NM_005762)	TTS (NM_005762)	1290	NR_106865	102465976		NR_106865	ENSG00000275924	MIR6807	hsa-mir-6807	microRNA 6807	ncRNA
92155	chr17	7673121	7674000	+	0	NA	exon (NM_001126114, exon 9 of 12)	exon (NM_001126114, exon 9 of 12)	1684	NM_001276699	7157		NM_000546	ENSG00000141510	TP53	BCC7|BMFS5|LFS1|P53|TRP53	tumor protein p53	protein-coding
115403	chr19	15284651	15285250	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-4499	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
114005	chr19	10863171	10863650	+	0	NA	intron (NM_001136482, intron 6 of 6)	intron (NM_001136482, intron 6 of 6)	-8143	NM_199141	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
11872	chr1	93082871	93083480	+	0	NA	intron (NM_001164393, intron 1 of 12)	MSTA|LTR|ERVL-MaLR	3892	NM_007358	22823		NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding
111685	chr19	4267521	4268180	+	0	NA	intron (NM_018074, intron 7 of 7)	intron (NM_018074, intron 7 of 7)	-11219	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
171212	chr3	195750421	195751300	+	0	NA	intron (NM_018406, intron 23 of 24)	CpG	29882	NM_001282506	200958		NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding
149030	chr21	14602521	14603180	+	0	NA	intron (NM_001256579, intron 4 of 6)	intron (NM_001256579, intron 4 of 6)	-19448	NM_001256370	64092		NM_022136	ENSG00000155307	SAMSN1	HACS1|NASH1|SASH2|SH3D6B|SLy2	SAM domain, SH3 domain and nuclear localization signals 1	protein-coding
118488	chr19	35929721	35930530	+	0	NA	Intergenic	L1MC5|LINE|L1	-6249	NM_024509	79414		NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
193087	chr6	28861501	28861900	+	0	NA	non-coding (NR_033379, exon 2 of 2)	non-coding (NR_033379, exon 2 of 2)	1977	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
171983	chr4	928471	928630	+	0	NA	intron (NM_005255, intron 1 of 27)	intron (NM_005255, intron 1 of 27)	3766	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
8065	chr1	38974871	38975230	+	0	NA	Intergenic	L1M5|LINE|L1	-16194	NM_001136275	79647		NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding
75150	chr15	64618521	64618980	+	0	NA	intron (NM_015042, intron 2 of 9)	LTR1A2|LTR|ERV1	84531	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
143749	chr20	32367621	32368230	+	0	NA	intron (NM_001164603, intron 2 of 3)	intron (NM_001164603, intron 2 of 3)	8860	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
64915	chr14	35416701	35417550	+	0	NA	Intergenic	Intergenic	-12376	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
217367	chr8	27919171	27919600	+	0	NA	intron (NM_173833, intron 4 of 8)	intron (NM_173833, intron 4 of 8)	-33269	NR_036249	100422828		NR_036249	ENSG00000265847	MIR4287	-	microRNA 4287	ncRNA
44498	chr11	106021751	106023000	+	0	NA	promoter-TSS (NM_001318747)	promoter-TSS (NM_001318747)	-88	NM_001318749	84437		NM_032424	ENSG00000170903	MSANTD4	KIAA1826	Myb/SANT DNA binding domain containing 4 with coiled-coils	protein-coding
62478	chr13	99384051	99385230	+	0	NA	intron (NR_026644, intron 8 of 8)	intron (NR_026644, intron 8 of 8)	28509	NR_030353	693208		NR_030353	ENSG00000207719	MIR623	MIRN623|hsa-mir-623	microRNA 623	ncRNA
3880	chr1	17009751	17010130	+	0	NA	intron (NM_001141974, intron 1 of 26)	intron (NM_001141974, intron 1 of 26)	1988	NM_001141974	23400		NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9|SPG78	ATPase cation transporting 13A2	protein-coding
130389	chr2	85314471	85315000	+	0	NA	Intergenic	Intergenic	13254	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
200387	chr6	134286301	134286500	+	0	NA	intron (NM_001143676, intron 1 of 13)	AluYc|SINE|Alu	31658	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
68002	chr14	75002271	75003930	+	0	NA	exon (NM_014239, exon 1 of 8)	exon (NM_014239, exon 1 of 8)	179	NM_014239	8892		NM_014239	ENSG00000119718	EIF2B2	EIF-2Bbeta|EIF2B|EIF2Bbeta|VWM2	eukaryotic translation initiation factor 2B subunit beta	protein-coding
206168	chr7	28054621	28054880	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-125707	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
235091	chrX	40278471	40279630	+	0	NA	intron (NR_110386, intron 1 of 2)	intron (NR_110386, intron 1 of 2)	16133	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
199629	chr6	121055571	121055750	+	0	NA	Intergenic	L1M8|LINE|L1	278820	NM_152730	221322		NM_152730	ENSG00000146350	TBC1D32	BROMI|C6orf170|C6orf171	TBC1 domain family member 32	protein-coding
165358	chr3	89466251	89466500	+	0	NA	intron (NM_005233, intron 15 of 16)	L1HS|LINE|L1	358754	NM_005233	2042		NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
169720	chr3	172138801	172139230	+	0	NA	intron (NM_022763, intron 3 of 25)	intron (NM_022763, intron 3 of 25)	98484	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
21555	chr1	206257001	206257330	+	0	NA	intron (NM_001377446, intron 2 of 21)	intron (NM_001377446, intron 2 of 21)	-51392	NM_001385243	729533		NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene|p17	family with sequence similarity 72 member A	protein-coding
44105	chr11	95922051	95922850	+	0	NA	intron (NM_201278, intron 1 of 16)	intron (NM_201278, intron 1 of 16)	1657	NM_016156	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
197427	chr6	73610401	73611430	+	0	NA	intron (NM_001382636, intron 6 of 8)	intron (NM_001382636, intron 6 of 8)	43077	NM_001382635	26503		NM_012434	ENSG00000119899	SLC17A5	AST|ISSD|NSD|SD|SIALIN|SIASD|SLD|VEAT	solute carrier family 17 member 5	protein-coding
166523	chr3	114393371	114393730	+	0	NA	intron (NM_001164343, intron 8 of 11)	intron (NM_001164343, intron 8 of 11)	-9908	NM_001164342	26137		NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
180464	chr5	10758401	10758930	+	0	NA	intron (NM_001291963, intron 1 of 2)	intron (NM_001291963, intron 1 of 2)	2569	NM_004394	1611		NM_004394	ENSG00000112977	DAP	DAP1	death associated protein	protein-coding
69050	chr14	91868671	91869100	+	0	NA	TTS (NM_001384162)	TTS (NM_001384162)	-1349	NM_001128596	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
43214	chr11	75432121	75433630	+	0	NA	Intergenic	Intergenic	-2246	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
123101	chr19	51553171	51553330	+	0	NA	Intergenic	Intergenic	-18033	NM_007147	7728		NM_007147	ENSG00000105497	ZNF175	OTK18	zinc finger protein 175	protein-coding
100030	chr17	57994471	57994700	+	0	NA	Intergenic	Intergenic	-6331	NM_007146	7716		NM_007146	ENSG00000136451	VEZF1	CMD1OO|DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding
3423	chr1	15835601	15836520	+	0	NA	non-coding (NR_024279, exon 2 of 2)	non-coding (NR_024279, exon 2 of 2)	-11647	NM_015001	23013		NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RATARS|RBM15C|SHARP	spen family transcriptional repressor	protein-coding
210531	chr7	100232401	100233000	+	0	NA	intron (NR_166147, intron 2 of 4)	AluSx1|SINE|Alu	13452	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
113154	chr19	8346271	8346630	+	0	NA	Intergenic	Intergenic	-3188	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
134887	chr2	148926121	148927300	+	0	NA	intron (NM_004522, intron 2 of 25)	intron (NM_004522, intron 2 of 25)	-21165	NR_111932	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
204889	chr7	6058221	6059680	+	0	NA	intron (NM_014413, intron 1 of 14)	CpG	225	NM_014413	27102		NM_014413	ENSG00000086232	EIF2AK1	HCR|HRI|LEMSPAD|hHRI	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
163010	chr3	49788871	49789300	+	0	NA	Intergenic	L1MA2|LINE|L1	-2543	NM_153273	9807		NM_153273	ENSG00000176095	IP6K1	IHPK1|PiUS	inositol hexakisphosphate kinase 1	protein-coding
210816	chr7	100879851	100880780	+	0	NA	intron (NM_015908, intron 2 of 19)	AluY|SINE|Alu	5212	NM_001128852	51593		NM_015908	ENSG00000087087	SRRT	ARS2|ASR2|serrate	serrate, RNA effector molecule	protein-coding
26387	chr10	16910771	16910930	+	0	NA	intron (NM_001081, intron 48 of 66)	HAL1|LINE|L1	-93396	NM_152724	6251		NM_012425	ENSG00000148484	RSU1	RSP-1	Ras suppressor protein 1	protein-coding
30668	chr10	80492571	80492800	+	0	NA	intron (NM_001128309, intron 2 of 5)	AluY|SINE|Alu	24444	NM_001351271	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
79588	chr16	1009871	1010700	+	0	NA	Intergenic	Intergenic	28515	NM_014587	30812		NM_014587	ENSG00000005513	SOX8	-	SRY-box transcription factor 8	protein-coding
125395	chr2	11481571	11481730	+	0	NA	Intergenic	Intergenic	-15473	NM_001278278	1876		NM_198256	ENSG00000169016	E2F6	E2F-6	E2F transcription factor 6	protein-coding
196394	chr6	43279101	43279300	+	0	NA	intron (NM_032538, intron 13 of 14)	intron (NM_032538, intron 13 of 14)	-19060	NM_153320	10864		NM_006672	ENSG00000137204	SLC22A7	NLT|OAT2|hOAT11	solute carrier family 22 member 7	protein-coding
149854	chr21	35102901	35103300	+	0	NA	Intergenic	L3b|LINE|CR1	-53798	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
179411	chr4	184232551	184232850	+	0	NA	Intergenic	LTR82B|LTR|ERVL	-14827	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
153822	chr22	29766421	29768100	+	0	NA	promoter-TSS (NM_001003684)	promoter-TSS (NM_001003684)	-109	NM_001003684	29796		NM_013387	ENSG00000184076	UQCR10	HSPC051|HSPC119|HSPC151|QCR9|UCCR7.2|UCRC	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding
127418	chr2	42123271	42124780	+	0	NA	Intergenic	Intergenic	-45328	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
108548	chr18	74551921	74552250	+	0	NA	intron (NM_032649, intron 1 of 11)	intron (NM_032649, intron 1 of 11)	17585	NM_032649	84735		NM_032649	ENSG00000150656	CNDP1	CN1|CPGL2|HsT2308	carnosine dipeptidase 1	protein-coding
181462	chr5	41903051	41903150	+	0	NA	Intergenic	Intergenic	-1244	NM_175921	285636		NM_175921	ENSG00000205765	RIMOC1	C5orf51	RAB7A interacting MON1-CCZ1 complex subunit 1	protein-coding
130555	chr2	85701301	85701830	+	0	NA	Intergenic	AluSp|SINE|Alu	7207	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
57606	chr12	122469771	122470130	+	0	NA	Intergenic	AluSz6|SINE|Alu	30982	NM_001350937	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
81807	chr16	11547971	11548130	+	0	NA	non-coding (NR_024320, exon 4 of 4)	non-coding (NR_024320, exon 4 of 4)	-20803	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
41079	chr11	65512871	65513100	+	0	NA	Intergenic	AluJb|SINE|Alu	-5553	NR_145459	109136579		NR_145459	ENSG00000289740	TALAM1	-	TALAM1 transcript, MALAT1 antisense RNA	ncRNA
45071	chr11	117064301	117065130	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	33713	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
233780	chrX	1432701	1432900	+	0	NA	intron (NM_001173473, intron 5 of 12).2	AluSc8|SINE|Alu	20109	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
61385	chr13	51455571	51456300	+	0	NA	Intergenic	MER52A|LTR|ERV1	2590	NR_103812	100507398		NR_103812	ENSG00000236778	INTS6-AS1	-	INTS6 antisense RNA 1	ncRNA
155182	chr22	37774051	37774350	+	0	NA	3' UTR (NM_007032, exon 14 of 14)	3' UTR (NM_007032, exon 14 of 14)	27966	NM_138632	11078		NM_007032	ENSG00000100106	TRIOBP	DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4	TRIO and F-actin binding protein	protein-coding
99421	chr17	50096201	50096680	+	0	NA	intron (NM_001199898, intron 2 of 11)	intron (NM_001199898, intron 2 of 11)	745	NM_001199899	5164		NM_002611	ENSG00000005882	PDK2	PDHK2|PDKII	pyruvate dehydrogenase kinase 2	protein-coding
91755	chr17	6830751	6830850	+	0	NA	intron (NM_053285, intron 1 of 7)	L1ME3A|LINE|L1	929	NM_053285	83659		NM_053285	ENSG00000167858	TEKT1	-	tektin 1	protein-coding
66557	chr14	62163071	62163330	+	0	NA	Intergenic	Intergenic	-23227	NR_104063	101954204		NR_104063	ENSG00000259142	LINC00644	-	long intergenic non-protein coding RNA 644	ncRNA
127685	chr2	43200771	43201000	+	0	NA	Intergenic	AluJr|SINE|Alu	25721	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
5479	chr1	25668921	25669580	+	0	NA	intron (NM_020379, intron 1 of 11)	MIRb|SINE|MIR	-26905	NM_001385185	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
79312	chr16	559001	559680	+	0	NA	Intergenic	Intergenic	-1054	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
215243	chr7	156921551	156922130	+	0	NA	Intergenic	Intergenic	-27872	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
100854	chr17	64149451	64149750	+	0	NA	intron (NM_001288732, intron 11 of 11)	AluSx|SINE|Alu	3261	NR_002995	677842		NR_002995	ENSG00000277887	SNORA50C	ACA62|SNORA76|SNORA76C	small nucleolar RNA, H/ACA box 50C	snoRNA
95104	chr17	34638171	34638780	+	0	NA	3' UTR (NM_001304438, exon 9 of 9)	3' UTR (NM_001304438, exon 9 of 9)	58893	NM_001304438	124842		NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding
160630	chr3	31540971	31541930	+	0	NA	intron (NM_178862, intron 1 of 15)	L1ME3B|LINE|L1	8525	NM_178862	201595		NM_178862	ENSG00000163527	STT3B	CDG1X|SIMP|STT3-B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein-coding
2395	chr1	9537921	9538180	+	0	NA	Intergenic	Intergenic	-1415	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
129788	chr2	71277601	71277950	+	0	NA	Intergenic	Intergenic	-50672	NM_020459	400961		NM_020459	ENSG00000124374	PAIP2B	-	poly(A) binding protein interacting protein 2B	protein-coding
215327	chr7	157355601	157356430	+	0	NA	intron (NM_001363676, intron 1 of 6)	intron (NM_001363676, intron 1 of 6)	19011	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
136176	chr2	174485871	174486400	+	0	NA	intron (NM_001033045, intron 1 of 16)	intron (NM_001033045, intron 1 of 16)	894	NM_001267050	151556		NM_152529	ENSG00000163328	GPR155	DEP.7|DEPDC3|LYCHOS|PGR22	G protein-coupled receptor 155	protein-coding
144158	chr20	34058501	34059330	+	0	NA	intron (NM_016732, intron 2 of 9)	L2c|LINE|L2	9796	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
177781	chr4	122827721	122828450	+	0	NA	intron (NM_001361665, intron 1 of 2)	MIRb|SINE|MIR	1254	NM_001361665	2247		NM_002006	ENSG00000138685	FGF2	BFGF|FGF-2|FGFB|HBGF-2	fibroblast growth factor 2	protein-coding
103610	chr17	78727601	78728530	+	0	NA	intron (NM_017456, intron 1 of 12)	intron (NM_017456, intron 1 of 12)	-4315	NM_001292018	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
187544	chr5	142769571	142771550	+	0	NA	promoter-TSS (NM_001349547)	promoter-TSS (NM_001349547)	183	NR_146198	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
148676	chr21	6140221	6140880	+	0	NA	Intergenic	Intergenic	29419	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
36608	chr11	6745451	6745890	+	0	NA	Intergenic	MER92B|LTR|ERV1	23287	NM_001004490	338755		NM_001004490	ENSG00000188124	OR2AG2	OR11-76|OR2AG2P	olfactory receptor family 2 subfamily AG member 2	protein-coding
221367	chr8	123379051	123379150	+	0	NA	intron (NM_014109, intron 2 of 27)	intron (NM_014109, intron 2 of 27)	17347	NM_014109	29028		NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family AAA domain containing 2	protein-coding
236670	chrX	76420121	76420650	+	0	NA	Intergenic	L1PA4|LINE|L1	-7325	NM_020932	57692		NM_020932	ENSG00000198934	MAGEE1	DAMAGE|HCA1	MAGE family member E1	protein-coding
192869	chr6	27331851	27332230	+	0	NA	Intergenic	AluSq|SINE|Alu	7279	NR_045612	387316		NM_032030		VN1R10P	FKSG83|VNR6I1P|b24o18.2|hs6V1-1p	vomeronasal 1 receptor 10 pseudogene	pseudo
203116	chr6	166623601	166623800	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	3551	NM_021135	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
12942	chr1	110746551	110747000	+	0	NA	Intergenic	Intergenic	-71835	NM_002232	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
209340	chr7	76240601	76240800	+	0	NA	intron (NM_001291831, intron 2 of 15)	intron (NM_001291831, intron 2 of 15)	38804	NM_001110199	222183		NM_153043	ENSG00000177679	SRRM3	-	serine/arginine repetitive matrix 3	protein-coding
44733	chr11	111926501	111927980	+	0	NA	promoter-TSS (NM_001278542)	promoter-TSS (NM_001278542)	96	NM_001278542	85458		NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding
209875	chr7	91050751	91050930	+	0	NA	intron (NM_012395, intron 10 of 13)	MSTB|LTR|ERVL-MaLR	-213593	NM_003505	8321		NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
170214	chr3	184154321	184154600	+	0	NA	promoter-TSS (NM_004423)	promoter-TSS (NM_004423)	-917	NM_004423	1857		NM_004423	ENSG00000161202	DVL3	DRS3	dishevelled segment polarity protein 3	protein-coding
47212	chr12	850871	851480	+	0	NA	intron (NM_018979, intron 4 of 27)	MIRc|SINE|MIR	81901	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
190739	chr6	372771	372930	+	0	NA	Intergenic	Intergenic	-18902	NR_046000	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
181575	chr5	43244951	43245050	+	0	NA	intron (NR_072980, intron 1 of 3)	intron (NR_072980, intron 1 of 3)	52148	NR_072980	167359		NM_153361	ENSG00000177453	NIM1K	NIM1	NIM1 serine/threonine protein kinase	protein-coding
179597	chr4	185427851	185427950	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1434	NM_001114357	441054		NM_001114357	ENSG00000205129	CFAP96	C4orf47	cilia and flagella associated protein 96	protein-coding
234354	chrX	15497901	15498250	+	0	NA	Intergenic	L2a|LINE|L2	-2732	NM_001320866	660		NM_001721	ENSG00000102010	BMX	ETK|PSCTK2|PSCTK3	BMX non-receptor tyrosine kinase	protein-coding
7652	chr1	35635551	35635850	+	0	NA	intron (NM_001199779, intron 2 of 5)	AluSc|SINE|Alu	-4163	NM_001199780	5690		NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome 20S subunit beta 2	protein-coding
195467	chr6	37046021	37046930	+	0	NA	Intergenic	AluJr|SINE|Alu	40820	NM_173558	221472		NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding
161167	chr3	39102801	39103580	+	0	NA	intron (NR_103866, intron 2 of 8)	intron (NR_103866, intron 2 of 8)	4437	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
110056	chr19	1483801	1484430	+	0	NA	exon (NM_017573, exon 9 of 15)	exon (NM_017573, exon 9 of 15)	-4900	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
37746	chr11	31817051	31817630	+	0	NA	intron (NR_033971, intron 1 of 2)	CpG	621	NM_001127612	5080		NM_000280	ENSG00000007372	PAX6	AN|AN1|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
8993	chr1	44655401	44655750	+	0	NA	intron (NM_001300746, intron 1 of 1)	intron (NM_001300746, intron 1 of 1)	15481	NR_145816	109623472		NR_145816		SNORD145	-	small nucleolar RNA, C/D box 145	snoRNA
33544	chr10	119288771	119288930	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	81279	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
222200	chr8	133049501	133049900	+	0	NA	intron (NM_001045556, intron 5 of 8)	MIR3|SINE|MIR	-3119	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
134702	chr2	144499001	144499200	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-20514	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
108989	chr18	79691151	79692100	+	0	NA	intron (NM_001202504, intron 1 of 12)	intron (NM_001202504, intron 1 of 12)	10195	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
203634	chr7	965371	965900	+	0	NA	3' UTR (NM_001031617, exon 3 of 3)	3' UTR (NM_001031617, exon 3 of 3)	9914	NM_001031617	90639		NM_001031617	ENSG00000240230	COX19	-	cytochrome c oxidase assembly factor COX19	protein-coding
238987	chrX	155820121	155820400	+	0	NA	Intergenic	L1MA3|LINE|L1	52525	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
228064	chr9	96121301	96121500	+	0	NA	Intergenic	L1MA8|LINE|L1	-4989	NR_132344	158434		NM_001256408	ENSG00000275465	LOC158434	-	uncharacterized LOC158434	ncRNA
72973	chr15	40570671	40570830	+	0	NA	intron (NM_152260, intron 1 of 2)	intron (NM_152260, intron 1 of 2)	1451	NM_152260	27079		NM_152260	ENSG00000166133	RPUSD2	C15orf19|C18B11|PUS9	RNA pseudouridine synthase domain containing 2	protein-coding
215570	chr7	158820571	158820830	+	0	NA	intron (NM_020728, intron 1 of 21)	AluJb|SINE|Alu	8809	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
55165	chr12	100156651	100156950	+	0	NA	non-coding (NR_036632, exon 10 of 10)	non-coding (NR_036632, exon 10 of 10)	-13926	NM_001006947	23074		NM_015054	ENSG00000111647	BLTP3B	SHIP164|SHIP164A|UHRF1BP1L	bridge-like lipid transfer protein family member 3B	protein-coding
88242	chr16	82404601	82404800	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-222269	NM_001257	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
105071	chr17	82093421	82093680	+	0	NA	intron (NM_004104, intron 4 of 42)	intron (NM_004104, intron 4 of 42)	-3410	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
197902	chr6	89357151	89358050	+	0	NA	Intergenic	Intergenic	-4878	NM_016021	51465		NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
190865	chr6	2110601	2110800	+	0	NA	intron (NM_001253846, intron 4 of 10)	intron (NM_001253846, intron 4 of 10)	65291	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
80990	chr16	4019371	4019800	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	-69141	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
151775	chr22	18075571	18076430	+	0	NA	Intergenic	Intergenic	-1990	NM_017929	55670		NM_017929	ENSG00000215193	PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
950	chr1	1744961	1747850	+	0	NA	promoter-TSS (NM_001199787)	promoter-TSS (NM_001199787)	-406	NM_001199787	9906		NM_182838		SLC35E2A	SLC35E2|SLC35E2AP|SLC35E2P	solute carrier family 35 member E2A (pseudogene)	pseudo
120336	chr19	43552421	43552880	+	0	NA	intron (NM_006297, intron 8 of 16)	MSR1|Satellite|Satellite	19462	NM_174945	284346		NM_174945	ENSG00000176472	ZNF575	-	zinc finger protein 575	protein-coding
39623	chr11	61428171	61428330	+	0	NA	intron (NR_165417, intron 2 of 9)	AluJr|SINE|Alu	1725	NM_024811	79869		NM_024811	ENSG00000149532	CPSF7	CFIm59	cleavage and polyadenylation specific factor 7	protein-coding
174585	chr4	40246471	40246730	+	0	NA	3' UTR (NM_004310, exon 3 of 3)	3' UTR (NM_004310, exon 3 of 3)	49569	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
101919	chr17	74460271	74461050	+	0	NA	Intergenic	Intergenic	-5713	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
231917	chr9	133103101	133104130	+	0	NA	intron (NM_001271775, intron 11 of 17)	intron (NM_001271775, intron 11 of 17)	17625	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
165945	chr3	107601451	107601750	+	0	NA	intron (NM_020235, intron 2 of 16)	Tigger1|DNA|TcMar-Tigger	78638	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
172306	chr4	1583301	1584000	+	0	NA	Intergenic	(TGCTCC)n|Simple_repeat|Simple_repeat	100341	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
156154	chr22	40193571	40194150	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	15935	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
56302	chr12	112411401	112412350	+	0	NA	promoter-TSS (NM_001320142)	promoter-TSS (NM_001320142)	-433	NM_001320142	6128		NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1|eL6	ribosomal protein L6	protein-coding
33052	chr10	110863901	110866580	+	0	NA	Intergenic	Intergenic	5664	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
166090	chr3	109563201	109563750	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-39353	NR_039647	100616129		NR_039647	ENSG00000265956	MIR4445	-	microRNA 4445	ncRNA
6385	chr1	27889621	27889950	+	0	NA	Intergenic	Intergenic	17241	NM_001105556	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
6233	chr1	27525451	27526330	+	0	NA	Intergenic	Intergenic	-35723	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
192735	chr6	26375451	26375750	+	0	NA	3' UTR (NM_001197247, exon 11 of 11)	3' UTR (NM_001197247, exon 11 of 11)	7422	NM_001197246	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
55190	chr12	101278421	101278780	+	0	NA	Intergenic	L2|LINE|L2	-1505	NM_014503	27340		NM_014503	ENSG00000120800	UTP20	1A6/DRIM|DRIM	UTP20 small subunit processome component	protein-coding
80965	chr16	3877721	3878330	+	0	NA	intron (NM_004380, intron 1 of 30)	intron (NM_004380, intron 1 of 30)	2095	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
157744	chr22	46621101	46621830	+	0	NA	intron (NM_015124, intron 1 of 18)	CpG	1079	NM_015124	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
56971	chr12	120539571	120540000	+	0	NA	intron (NM_001330474, intron 1 of 16)	intron (NM_001330474, intron 1 of 16)	5429	NM_001330474	9921		NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding
197652	chr6	85355001	85355280	+	0	NA	Intergenic	Intergenic	35046	NR_134634	101928820		NR_134633	ENSG00000234155	LINC02535	-	long intergenic non-protein coding RNA 2535	ncRNA
19593	chr1	179369501	179370180	+	0	NA	intron (NM_144696, intron 3 of 25)	intron (NM_144696, intron 3 of 25)	3796	NR_073544	126859		NM_144619	ENSG00000162779	AXDND1	C1orf125	axonemal dynein light chain domain containing 1	protein-coding
48051	chr12	7016221	7016630	+	0	NA	intron (NM_005768, intron 1 of 12)	AluSx1|SINE|Alu	2051	NM_005768	10162		NM_005768	ENSG00000111684	LPCAT3	C3F|LPCAT|LPLAT 5|LPLAT12|LPSAT|MBOAT5|OACT5|nessy	lysophosphatidylcholine acyltransferase 3	protein-coding
195838	chr6	41373601	41374480	+	0	NA	Intergenic	CpG	38432	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
141592	chr2	241627571	241627730	+	0	NA	intron (NM_015963, intron 2 of 5)	intron (NM_015963, intron 2 of 5)	9508	NM_015963	51078		NM_015963	ENSG00000176946	THAP4	CGI-36|Nb(III)|PP238	THAP domain containing 4	protein-coding
204253	chr7	2608901	2609730	+	0	NA	intron (NM_152558, intron 21 of 21)	FLAM_C|SINE|Alu	-22671	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
190951	chr6	2908251	2908880	+	0	NA	Intergenic	Intergenic	-5256	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
16274	chr1	154000821	154001280	+	0	NA	exon (NM_207308, exon 37 of 40)	exon (NM_207308, exon 37 of 40)	10288	NM_001030	6232		NM_001030	ENSG00000177954	RPS27	DBA17|MPS-1|MPS1|S27|eS27	ribosomal protein S27	protein-coding
124499	chr19	58577651	58579100	+	0	NA	intron (NR_026052, intron 1 of 1)	intron (NR_026052, intron 1 of 1)	2976	NR_026052	65996		NM_023939	ENSG00000293115	CENPBD2P	CENPBD1P1	CENPB DNA-binding domains containing 2, pseudogene	pseudo
40297	chr11	63867271	63867630	+	0	NA	intron (NM_004954, intron 1 of 16)	intron (NM_004954, intron 1 of 16)	-21087	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
21448	chr1	205479871	205482580	+	0	NA	Intergenic	Intergenic	-23444	NM_002596	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
86229	chr16	58118871	58119030	+	0	NA	intron (NR_136632, intron 1 of 5)	intron (NR_136632, intron 1 of 5)	10431	NM_013242	29105		NM_013242	ENSG00000070761	CFAP20	BUG22|C16orf80|EVORF|GTL3|fSAP23	cilia and flagella associated protein 20	protein-coding
203733	chr7	1144221	1144700	+	0	NA	Intergenic	Intergenic	-6203	NM_001134395	84310		NM_032350	ENSG00000146540	C7orf50	Cholesin|YCR016W	chromosome 7 open reading frame 50	protein-coding
208082	chr7	56095021	56095280	+	0	NA	Intergenic	AluSq2|SINE|Alu	-2154	NR_047689	5260		NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding
222081	chr8	130352201	130352880	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-56007	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
214728	chr7	151027451	151029150	+	0	NA	promoter-TSS (NM_001282292)	promoter-TSS (NM_001282292)	-122	NM_001282293	11194		NM_007188	ENSG00000197150	ABCB8	EST328128|M-ABC1|MABC1|MITOSUR	ATP binding cassette subfamily B member 8	protein-coding
84090	chr16	29615651	29615950	+	0	NA	Intergenic	AluJb|SINE|Alu	-2083	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
68194	chr14	76782551	76783180	+	0	NA	3' UTR (NM_014909, exon 7 of 7)	3' UTR (NM_014909, exon 7 of 7)	3859	NR_104183	100506603		NR_104183	ENSG00000258301	VASH1-AS1	-	VASH1 antisense RNA 1	ncRNA
202557	chr6	158659901	158661130	+	0	NA	intron (NM_001242395, intron 2 of 15)	intron (NM_001242395, intron 2 of 15)	-2888	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
157643	chr22	46117451	46117550	+	0	NA	Intergenic	Intergenic	3814	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
54373	chr12	89760321	89761130	+	0	NA	Intergenic	Intergenic	-51359	NM_001366526	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
132559	chr2	106332071	106332230	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-37595	NR_157576	402096		NR_157576		ANAPC1P6	-	ANAPC1 pseudogene 6	pseudo
128267	chr2	54579521	54580680	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	21706	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
64630	chr14	31082071	31082700	+	0	NA	intron (NM_007077, intron 5 of 5)	intron (NM_007077, intron 5 of 5)	55742	NM_001254728	11154		NM_007077	ENSG00000100478	AP4S1	AP47B|CLA20|CLAPS4|CPSQ6|SPG52	adaptor related protein complex 4 subunit sigma 1	protein-coding
77809	chr15	88593571	88593730	+	0	NA	intron (NR_120370, intron 2 of 2)	AluJo|SINE|Alu	10953	NR_120369	101929743		NR_120369	ENSG00000249487	LINC01586	-	long intergenic non-protein coding RNA 1586	ncRNA
198160	chr6	93871151	93871550	+	0	NA	Intergenic	L1HS|LINE|L1	153047	NR_152795	643432		NR_015362		TSG1	-	tumor suppressor TSG1	ncRNA
190601	chr5	181163651	181164380	+	0	NA	Intergenic	FRAM|SINE|Alu	9072	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
201012	chr6	141321621	141322030	+	0	NA	Intergenic	L1M3d|LINE|L1	638011	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA
54425	chr12	91367351	91367450	+	0	NA	Intergenic	Intergenic	-184583	NM_001920	1634		NM_001920	ENSG00000011465	DCN	CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
84065	chr16	29590521	29590950	+	0	NA	intron (NR_135305, intron 1 of 13)	intron (NR_135305, intron 1 of 13)	4357	NR_135305	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
43526	chr11	82695671	82696080	+	0	NA	Intergenic	Intergenic	37989	NM_175885	220382		NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding
56748	chr12	120144051	120144350	+	0	NA	intron (NM_006836, intron 42 of 57)	AluJb|SINE|Alu	11299	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
47724	chr12	6463041	6464250	+	0	NA	3' UTR (NM_014231, exon 5 of 5)	3' UTR (NM_014231, exon 5 of 5)	7032	NR_123717	6843		NM_014231	ENSG00000139190	VAMP1	CMS25|SAX1|SPAX1|SYB1|VAMP-1	vesicle associated membrane protein 1	protein-coding
73827	chr15	49146071	49146650	+	0	NA	intron (NM_001143887, intron 1 of 12)	intron (NM_001143887, intron 1 of 12)	9239	NM_001143887	9318		NM_004236	ENSG00000166200	COPS2	ALIEN|CSN2|SGN2|TRIP15	COP9 signalosome subunit 2	protein-coding
194609	chr6	33532151	33532330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	48036	NM_001188	578		NM_001188	ENSG00000030110	BAK1	BAK|BAK-LIKE|BCL2L7|CDN1	BCL2 antagonist/killer 1	protein-coding
120760	chr19	45420501	45420980	+	0	NA	intron (NM_001369409, intron 3 of 8)	intron (NM_001369409, intron 3 of 8)	2788	NM_001369416	2067		NM_001983	ENSG00000012061	ERCC1	COFS4|RAD10|UV20	ERCC excision repair 1, endonuclease non-catalytic subunit	protein-coding
136092	chr2	173402421	173403000	+	0	NA	Intergenic	Intergenic	47838	NM_031942	83879		NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding
16754	chr1	155322801	155323900	+	0	NA	promoter-TSS (NM_001278229)	promoter-TSS (NM_001278229)	495	NR_145425	284618		NM_173639	ENSG00000225855	RUSC1-AS1	C1orf104	RUSC1 antisense RNA 1	ncRNA
38844	chr11	47324101	47325050	+	0	NA	exon (NM_001376597, exon 32 of 36)	exon (NM_001376597, exon 32 of 36)	28127	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
191089	chr6	3748301	3748730	+	0	NA	intron (NM_183373, intron 1 of 4)	intron (NM_183373, intron 1 of 4)	3198	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
176272	chr4	87058171	87058980	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	51574	NM_005935	4299		NM_005935	ENSG00000172493	AFF1	AF4|FEL|MLLT2|PBM1	ALF transcription elongation factor 1	protein-coding
170800	chr3	189134101	189134500	+	0	NA	Intergenic	Intergenic	-37671	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
229097	chr9	114378921	114379900	+	0	NA	intron (NM_001317952, intron 1 of 20)	intron (NM_001317952, intron 1 of 20)	8572	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
173914	chr4	25238801	25239550	+	0	NA	intron (NM_018323, intron 1 of 9)	LTR12C|LTR|ERV1	5142	NM_018323	55300		NM_018323	ENSG00000038210	PI4K2B	PI4KIIB|PIK42B	phosphatidylinositol 4-kinase type 2 beta	protein-coding
194959	chr6	35300851	35301600	+	0	NA	intron (NM_022047, intron 1 of 10)	intron (NM_022047, intron 1 of 10)	3407	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
198019	chr6	90126901	90127100	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	169843	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
122830	chr19	50417751	50418250	+	0	NA	promoter-TSS (NM_001243999)	promoter-TSS (NM_001243999)	-938	NM_003121	6689		NM_003121	ENSG00000269404	SPIB	SPI-B	Spi-B transcription factor	protein-coding
14216	chr1	143201421	143201780	+	0	NA	Intergenic	Intergenic	220992	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
136149	chr2	174329821	174330500	+	0	NA	non-coding (NR_038897, exon 3 of 3)	non-coding (NR_038897, exon 3 of 3)	4133	NR_038897	285084		NR_038897	ENSG00000231453	LINC01305	-	long intergenic non-protein coding RNA 1305	ncRNA
206147	chr7	27834821	27835080	+	0	NA	intron (NM_175061, intron 4 of 4)	intron (NM_175061, intron 4 of 4)	94855	NM_001362794	8887		NM_006024	ENSG00000106052	TAX1BP1	CALCOCO3|T6BP|TXBP151	Tax1 binding protein 1	protein-coding
148649	chr21	6104771	6105130	+	0	NA	Intergenic	Intergenic	-6181	NM_001320643	102724428		NM_001320643	ENSG00000275993	LOC102724428	SIK|SIK-1|SIK1|SIK1B|SNF1LK	salt inducible kinase 1B (putative)	protein-coding
71884	chr15	22471351	22471650	+	0	NA	Intergenic	Intergenic	10874	NR_036470	100132101		NR_036470		HERC2P7	-	HERC2 pseudogene 7	pseudo
233852	chrX	1514901	1515350	+	0	NA	intron (NM_178129, intron 1 of 1)	AluSx1|SINE|Alu	22060	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
116478	chr19	18105751	18106130	+	0	NA	intron (NM_015016, intron 1 of 26)	intron (NM_015016, intron 1 of 26)	-7124	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
217348	chr8	27772171	27773180	+	0	NA	promoter-TSS (NM_001304529)	promoter-TSS (NM_001304529)	-35	NM_001304529	55246		NM_018246	ENSG00000147419	CCDC25	-	coiled-coil domain containing 25	protein-coding
59246	chr13	23921401	23921680	+	0	NA	intron (NR_073430, intron 3 of 4)	intron (NR_073430, intron 3 of 4)	-24038	NR_104426	387911		NM_001007537	ENSG00000205863	C1QTNF9B	CTRP9B	C1q and TNF related 9B	protein-coding
6855	chr1	31061071	31061430	+	0	NA	intron (NM_014676, intron 1 of 21)	AluJo|SINE|Alu	4467	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
207757	chr7	50068001	50068430	+	0	NA	intron (NM_007009, intron 3 of 7)	HERV15-int|LTR|ERV1	25031	NM_001159878	11055		NM_007009	ENSG00000042813	ZPBP	SPGF66|ZPBP1	zona pellucida binding protein	protein-coding
21626	chr1	206586071	206586430	+	0	NA	intron (NM_182665, intron 4 of 4)	intron (NM_182665, intron 4 of 4)	26215	NM_006893	1939		NM_006893	ENSG00000143486	EIF2D	HCA56|LGTN	eukaryotic translation initiation factor 2D	protein-coding
120491	chr19	44758621	44759450	+	0	NA	TTS (NR_107052)	TTS (NR_107052)	378	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
137759	chr2	198127671	198127900	+	0	NA	intron (NM_006226, intron 5 of 5)	intron (NM_006226, intron 5 of 5)	247312	NR_110267	101927619		NR_110267		LINC01923	-	long intergenic non-protein coding RNA 1923	ncRNA
164700	chr3	67662451	67662990	+	0	NA	intron (NR_109992, intron 1 of 6)	L2b|LINE|L2	8023	NR_109993	101927111		NR_109992	ENSG00000241316	SUCLG2-DT	SUCLG2-AS1	SUCLG2 divergent transcript	ncRNA
143572	chr20	31664871	31665550	+	0	NA	non-coding (NR_134257, exon 3 of 3)	non-coding (NR_134257, exon 3 of 3)	27298	NM_032609	84701		NM_032609	ENSG00000131055	COX4I2	COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2	cytochrome c oxidase subunit 4I2	protein-coding
129294	chr2	68468821	68469080	+	0	NA	intron (NM_173545, intron 1 of 9)	intron (NM_173545, intron 1 of 9)	1365	NM_173545	200558		NM_173545	ENSG00000169621	APLF	APFL|C2orf13|PALF|Xip1|ZCCHH1	aprataxin and PNKP like factor	protein-coding
99509	chr17	50206721	50207300	+	0	NA	Intergenic	Intergenic	-5379	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
11362	chr1	89629741	89631680	+	0	NA	intron (NR_033981, intron 2 of 2)	intron (NR_033981, intron 2 of 2)	2184	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
154324	chr22	32132721	32133000	+	0	NA	intron (NR_040114, intron 3 of 3)	MIRb|SINE|MIR	10883	NR_040114	23782		NR_040114	ENSG00000290475	AP1B1P1	ADTB1L1|dJ127L4.2	AP1B1 pseudogene 1	pseudo
120517	chr19	44845501	44846700	+	0	NA	promoter-TSS (NM_001042724)	promoter-TSS (NM_001042724)	-197	NM_001042724	5819		NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding
106997	chr18	32040351	32041830	+	0	NA	intron (NM_017831, intron 2 of 5)	intron (NM_017831, intron 2 of 5)	22265	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
4396	chr1	21020151	21020650	+	0	NA	intron (NM_001198801, intron 4 of 34)	AluJr|SINE|Alu	-31968	NR_031657	100302155		NR_031657	ENSG00000221808	MIR1256	MIRN1256|hsa-mir-1256	microRNA 1256	ncRNA
118153	chr19	35013951	35015230	+	0	NA	intron (NM_001320036, intron 11 of 19)	MIR|SINE|MIR	14267	NM_001136199	57655		NM_020895	ENSG00000089351	GRAMD1A	KIAA1533	GRAM domain containing 1A	protein-coding
236999	chrX	101738351	101738450	+	0	NA	Intergenic	(CCCTC)n|Simple_repeat|Simple_repeat	-78550	NM_014782	9823		NM_014782	ENSG00000184867	ARMCX2	ALEX2|GASP9	armadillo repeat containing X-linked 2	protein-coding
152544	chr22	20996251	20996350	+	0	NA	intron (NM_006767, intron 18 of 20)	intron (NM_006767, intron 18 of 20)	-5622	NR_027052	439931		NR_027051	ENSG00000230513	THAP7-AS1	-	THAP7 antisense RNA 1	ncRNA
30867	chr10	86709821	86710180	+	0	NA	exon (NM_001080114, exon 9 of 14)	exon (NM_001080114, exon 9 of 14)	41436	NM_001080116	11155		NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding
178105	chr4	140675601	140675800	+	0	NA	intron (NM_015130, intron 6 of 20)	MER5A|DNA|hAT-Charlie	-32620	NR_077215	644962		NR_077215		TNRC18P1	-	trinucleotide repeat containing 18 pseudogene 1	pseudo
22424	chr1	220112951	220113580	+	0	NA	intron (NM_018060, intron 11 of 22)	intron (NM_018060, intron 11 of 22)	4697	NR_029628	406997		NR_029628	ENSG00000207590	MIR215	MIRN215|miRNA215|mir-215	microRNA 215	ncRNA
143465	chr20	31051651	31052280	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-205699	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
197535	chr6	78783651	78783750	+	0	NA	Intergenic	L1HS|LINE|L1	-83851	NM_001010844	134728		NM_001010844	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin 1 receptor associated kinase 1 binding protein 1	protein-coding
153795	chr22	29609251	29609350	+	0	NA	intron (NM_181830, intron 1 of 14)	intron (NM_181830, intron 1 of 14)	5667	NM_181829	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
113715	chr19	10451651	10452200	+	0	NA	intron (NM_001111307, intron 6 of 14)	intron (NM_001111307, intron 6 of 14)	-1007	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
48826	chr12	12327471	12328050	+	0	NA	3' UTR (NM_018050, exon 4 of 4)	3' UTR (NM_018050, exon 4 of 4)	22482	NM_001363613	54682		NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
91622	chr17	5392921	5393730	+	0	NA	intron (NM_002532, intron 9 of 16)	AluJr|SINE|Alu	-26316	NM_001160243	84268		NM_032308	ENSG00000129197	RPAIN	HRIP|RIP	RPA interacting protein	protein-coding
78527	chr15	92948851	92949150	+	0	NA	exon (NM_001271, exon 13 of 39)	exon (NM_001271, exon 13 of 39)	44601	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
45803	chr11	119339601	119340600	+	0	NA	intron (NM_031433, intron 14 of 14)	CpG	783	NM_001278431	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
119025	chr19	38921351	38922050	+	0	NA	intron (NM_017827, intron 3 of 15).2	intron (NM_017827, intron 3 of 15).2	9063	NM_017827	54938		NM_017827	ENSG00000104835	SARS2	SARS|SARSM|SERS|SYS|SerRS|SerRSmt|mtSerRS	seryl-tRNA synthetase 2, mitochondrial	protein-coding
141747	chr2	241894701	241894900	+	0	NA	intron (NM_001382370, intron 2 of 2)	(GCCT)n|Simple_repeat|Simple_repeat	4340	NM_001382370	285095		NM_001382368	ENSG00000216921	FAM240C	-	family with sequence similarity 240 member C	protein-coding
183595	chr5	80194401	80195230	+	0	NA	intron (NM_001174072, intron 2 of 11)	intron (NM_001174072, intron 2 of 11)	61233	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
137931	chr2	201097071	201097300	+	0	NA	Intergenic	AluY|SINE|Alu	-18919	NM_001127184	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
193251	chr6	29945001	29945900	+	0	NA	intron (NM_001242758, intron 7 of 7)	intron (NM_001242758, intron 7 of 7)	2918	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
215821	chr8	6417201	6418230	+	0	NA	intron (NR_136159, intron 3 of 6)	L1MEf|LINE|L1	10562	NM_001322045	79648		NM_024596	ENSG00000147316	MCPH1	BRIT1|MCT	microcephalin 1	protein-coding
221861	chr8	128303271	128303430	+	0	NA	Intergenic	Intergenic	153234	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
236124	chrX	57591371	57593550	+	0	NA	exon (NM_007157, exon 1 of 1)	exon (NM_007157, exon 1 of 1)	449	NM_007157	158586		NM_007157	ENSG00000198455	ZXDB	ZNF905|dJ83L6.1	zinc finger X-linked duplicated B	protein-coding
97181	chr17	42675251	42675590	+	0	NA	intron (NM_024927, intron 1 of 12)	intron (NM_024927, intron 1 of 12)	591	NR_073574	79990		NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding
182744	chr5	68277001	68277200	+	0	NA	intron (NM_181523, intron 4 of 15)	intron (NM_181523, intron 4 of 15)	-11419	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
172581	chr4	2473371	2474050	+	0	NA	intron (NM_001185009, intron 2 of 8)	AluSg7|SINE|Alu	4257	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
84320	chr16	30139701	30140200	+	0	NA	Intergenic	HAL1|LINE|L1	-16641	NM_001109891	5595		NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
145553	chr20	44208521	44209180	+	0	NA	intron (NM_016470, intron 1 of 3)	intron (NM_016470, intron 1 of 3)	1921	NM_016470	51526		NM_016470	ENSG00000132823	OSER1	C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1	oxidative stress responsive serine rich 1	protein-coding
167889	chr3	136140451	136140780	+	0	NA	intron (NM_002718, intron 13 of 13)	AluSp|SINE|Alu	53853	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
235873	chrX	51536951	51537050	+	0	NA	Intergenic	L1PA3|LINE|L1	-29559	NR_110654	102723426		NR_110654		LINC01496	-	long intergenic non-protein coding RNA 1496	ncRNA
128139	chr2	48349071	48349230	+	0	NA	intron (NR_164691, intron 2 of 4)	AluSz6|SINE|Alu	34468	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
29217	chr10	68997401	68997600	+	0	NA	intron (NM_015634, intron 1 of 6)	MSTA|LTR|ERVL-MaLR	8697	NM_015634	26128		NM_015634	ENSG00000198954	KIFBP	KBP|KIAA1279|KIF1BP|TTC20	kinesin family binding protein	protein-coding
194731	chr6	33853101	33853930	+	0	NA	Intergenic	Intergenic	43392	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
97888	chr17	45108001	45108400	+	0	NA	TTS (NM_133373)	TTS (NM_133373)	6233	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
85742	chr16	56684371	56684530	+	0	NA	TTS (NM_005952)	TTS (NM_005952)	1980	NM_005952	4501		NM_005952	ENSG00000187193	MT1X	MT-1l|MT1	metallothionein 1X	protein-coding
804	chr1	1551851	1552930	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	-11766	NM_001114748	339453		NM_001114748	ENSG00000205090	TMEM240	C1orf70|SCA21	transmembrane protein 240	protein-coding
90125	chr16	90120501	90121050	+	0	NA	intron (NR_126161, intron 3 of 3)	MER21B|LTR|ERVL	18511	NR_126161	100996541		NR_126161		FAM157C	-	family with sequence similarity 157 member C	ncRNA
146328	chr20	49228651	49229280	+	0	NA	intron (NM_017895, intron 8 of 20)	intron (NM_017895, intron 8 of 20)	9549	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
25113	chr10	3963121	3963580	+	0	NA	Intergenic	Intergenic	-27810	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
52489	chr12	56003901	56004500	+	0	NA	exon (NM_000456, exon 6 of 6)	exon (NM_000456, exon 6 of 6)	-3304	NM_001351091	64375		NM_022465	ENSG00000123411	IKZF4	EOS|ZNFN1A4	IKAROS family zinc finger 4	protein-coding
87650	chr16	74573751	74574050	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluSx3|SINE|Alu	33214	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
102473	chr17	75730521	75730780	+	0	NA	intron (NM_001005619, intron 7 of 38)	(TTCC)n|Simple_repeat|Simple_repeat	5954	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
213181	chr7	132455151	132456180	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	120805	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
179742	chr5	234351	234650	+	0	NA	intron (NM_001330758, intron 8 of 12)	MER2|DNA|TcMar-Tigger	16180	NM_004168	6389		NM_004168	ENSG00000073578	SDHA	CMD1GG|FP|MC2DN1|NDAXOA|PGL5|PPGL5|SDH1|SDH2|SDHF	succinate dehydrogenase complex flavoprotein subunit A	protein-coding
46404	chr11	126329251	126330230	+	0	NA	intron (NM_014026, intron 2 of 5)	MIRc|SINE|MIR	25680	NM_001350236	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
8262	chr1	39798671	39799960	+	0	NA	Intergenic	Intergenic	10339	NR_135805	101929536		NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA
28061	chr10	43285401	43285600	+	0	NA	Intergenic	Intergenic	-18435	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
191383	chr6	7542671	7543200	+	0	NA	intron (NM_001319034, intron 1 of 23)	CpG	1264	NM_001319034	1832		NM_004415	ENSG00000096696	DSP	DCWHKTA|DP	desmoplakin	protein-coding
182643	chr5	67161051	67161430	+	0	NA	intron (NM_015183, intron 26 of 27)	intron (NM_015183, intron 26 of 27)	35559	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
24540	chr1	244850751	244852250	+	0	NA	3' UTR (NM_004501, exon 14 of 14)	3' UTR (NM_004501, exon 14 of 14)	2717	NR_132782	106635532		NR_132782		SNORA100	-	small nucleolar RNA, H/ACA box 100	snoRNA
6557	chr1	28658771	28658930	+	0	NA	Intergenic	AluSz6|SINE|Alu	-9934	NM_024482	10691		NM_006582	ENSG00000162419	GMEB1	P96PIF|PIF96	glucocorticoid modulatory element binding protein 1	protein-coding
76966	chr15	78166771	78166930	+	0	NA	TTS (NM_015162)	TTS (NM_015162)	17488	NM_005530	3419		NM_005530	ENSG00000166411	IDH3A	RP90	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein-coding
139526	chr2	224575271	224575430	+	0	NA	intron (NM_003590, intron 1 of 15)	intron (NM_003590, intron 1 of 15)	-5395	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
221955	chr8	129942951	129943050	+	0	NA	intron (NM_001353279, intron 2 of 13)	intron (NM_001353279, intron 2 of 13)	-3189	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
178564	chr4	151114551	151114850	+	0	NA	Intergenic	LTR40c|LTR|ERVL	10873	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
50872	chr12	49184911	49186030	+	0	NA	exon (NM_001270400, exon 4 of 4)	exon (NM_001270400, exon 4 of 4)	3610	NM_006009	7846		NM_006009	ENSG00000167552	TUBA1A	B-ALPHA-1|LIS3|TUBA3	tubulin alpha 1a	protein-coding
91275	chr17	4089821	4090080	+	0	NA	intron (NM_015113, intron 12 of 54)	intron (NM_015113, intron 12 of 54)	53080	NM_015113	23140		NM_015113	ENSG00000074755	ZZEF1	ZZZ4	zinc finger ZZ-type and EF-hand domain containing 1	protein-coding
32933	chr10	110279151	110279650	+	0	NA	intron (NM_005962, intron 4 of 5)	intron (NM_005962, intron 4 of 5)	25520	NM_005871	10285		NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding
224085	chr9	4339221	4340230	+	0	NA	Intergenic	Intergenic	-39657	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
161239	chr3	39225221	39225480	+	0	NA	Intergenic	Intergenic	-32755	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
85308	chr16	49463371	49464200	+	0	NA	Intergenic	Intergenic	54800	NR_144553	1596		NR_144553	ENSG00000260089	ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
31905	chr10	100372651	100374530	+	0	NA	promoter-TSS (NR_026762)	promoter-TSS (NR_026762)	14	NR_026762	90271		NR_026762	ENSG00000235823	OLMALINC	C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS	oligodendrocyte maturation-associated long intergenic non-coding RNA	ncRNA
225483	chr9	35618951	35621350	+	0	NA	Intergenic	Intergenic	-1737	NM_001782	971		NM_001782	ENSG00000137101	CD72	CD72b|LYB2	CD72 molecule	protein-coding
222814	chr8	142464971	142465330	+	0	NA	intron (NM_001702, intron 2 of 30)	intron (NM_001702, intron 2 of 30)	15501	NM_001702	575		NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding
130632	chr2	86077501	86077700	+	0	NA	intron (NM_015425, intron 11 of 33)	intron (NM_015425, intron 11 of 33)	28286	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
4588	chr1	22075251	22075350	+	0	NA	intron (NM_001039802, intron 2 of 6)	intron (NM_001039802, intron 2 of 6)	22591	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
221605	chr8	125528721	125529780	+	0	NA	Intergenic	MIRb|SINE|MIR	97041	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
228408	chr9	99193251	99193550	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	28542	NM_033087	85365		NM_033087	ENSG00000119523	ALG2	CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2	ALG2 alpha-1,3/1,6-mannosyltransferase	protein-coding
198313	chr6	100665271	100665430	+	0	NA	intron (NM_006828, intron 14 of 41)	intron (NM_006828, intron 14 of 41)	-200429	NM_005068	6492		NM_005068	ENSG00000112246	SIM1	bHLHe14	SIM bHLH transcription factor 1	protein-coding
190488	chr5	180331651	180332480	+	0	NA	intron (NM_005110, intron 4 of 18)	Charlie8|DNA|hAT-Charlie	21271	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
144523	chr20	35706821	35707450	+	0	NA	non-coding (NR_040724, exon 15 of 18)	non-coding (NR_040724, exon 15 of 18)	7730	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
19072	chr1	170072501	170072700	+	0	NA	intron (NM_001204514, intron 1 of 20)	intron (NM_001204514, intron 1 of 20)	2095	NM_001375830	22920		NM_014970	ENSG00000075945	KIFAP3	FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1	kinesin associated protein 3	protein-coding
106432	chr18	13579901	13580100	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	-31114	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA
225090	chr9	33398101	33398500	+	0	NA	intron (NM_001318157, intron 2 of 6)	L2|LINE|L2	4268	NR_164778	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
233956	chrX	2620751	2620850	+	0	NA	intron (NR_033380, intron 6 of 8)	intron (NR_033380, intron 6 of 8)	-5453	NR_037842	100359394		NR_037842	ENSG00000230542	LINC00102	NCRNA00102	long intergenic non-protein coding RNA 102	ncRNA
214851	chr7	151337871	151338030	+	0	NA	Intergenic	AluY|SINE|Alu	-3862	NM_001385355	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
226945	chr9	79633151	79633800	+	0	NA	intron (NM_001351547, intron 5 of 18)	intron (NM_001351547, intron 5 of 18)	60298	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
224804	chr9	22470001	22470200	+	0	NA	Intergenic	Intergenic	23276	NM_022160	63951		NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding
188043	chr5	149776901	149777300	+	0	NA	intron (NM_001172699, intron 1 of 10)	intron (NM_001172699, intron 1 of 10)	5160	NM_001172699	133522		NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
127637	chr2	43136691	43137780	+	0	NA	Intergenic	MIRc|SINE|MIR	-34790	NR_151714	100506047		NR_151714		LINC02580	-	long intergenic non-protein coding RNA 2580	ncRNA
24031	chr1	235276971	235277550	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-49956	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
46698	chr11	128775751	128776800	+	0	NA	intron (NM_001167681, intron 5 of 9)	intron (NM_001167681, intron 5 of 9)	66194	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
142227	chr20	3089271	3089630	+	0	NA	Intergenic	AluY|SINE|Alu	-4726	NM_000490	551		NM_000490	ENSG00000101200	AVP	ADH|ARVP|AVP-NPII|AVRP|VP	arginine vasopressin	protein-coding
140045	chr2	231258821	231259350	+	0	NA	exon (NM_001271466, exon 11 of 25)	exon (NM_001271466, exon 11 of 25)	60454	NM_001352755	80210		NM_025139	ENSG00000135931	ARMC9	ARM|JBTS30|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
129439	chr2	69490351	69491250	+	0	NA	intron (NM_001371575, intron 17 of 20)	L1MB3|LINE|L1	29371	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
190615	chr5	181183811	181185350	+	0	NA	Intergenic	Intergenic	7328	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
87926	chr16	79281451	79281750	+	0	NA	Intergenic	AluSc|SINE|Alu	319137	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
207328	chr7	44049201	44049800	+	0	NA	intron (NM_001284313, intron 1 of 10)	intron (NM_001284313, intron 1 of 10)	-2266	NR_106896	102466985		NR_106896	ENSG00000284067	MIR6837	hsa-mir-6837	microRNA 6837	ncRNA
135376	chr2	160471951	160472250	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	21707	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
233606	chrX	342901	343100	+	0	NA	intron (NM_013239, intron 7 of 12)	CpG-29373	23855	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
70882	chr14	103849421	103850250	+	0	NA	intron (NR_038436, intron 1 of 2)	intron (NR_038436, intron 1 of 2)	2114	NR_038436	145216		NR_038436	ENSG00000258735	PPP1R13B-DT	HITT|LINC00637	PPP1R13B divergent transcript	ncRNA
216127	chr8	11417901	11418480	+	0	NA	intron (NR_026814, intron 3 of 6)	MER41B|LTR|ERV1	48563	NM_053279	83648		NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265|DIORA-1	family with sequence similarity 167 member A	protein-coding
133100	chr2	112630021	112630280	+	0	NA	Intergenic	Intergenic	14030	NR_033871	400999		NR_033871		SLC20A1-DT	-	SLC20A1 divergent transcript	ncRNA
18347	chr1	161216021	161216280	+	0	NA	intron (NM_004106, intron 1 of 4)	intron (NM_004106, intron 1 of 4)	855	NM_004106	2207		NM_004106	ENSG00000158869	FCER1G	FCRG	Fc epsilon receptor Ig	protein-coding
142343	chr20	3744821	3745930	+	0	NA	intron (NM_001197327, intron 5 of 12)	intron (NM_001197327, intron 5 of 12)	12690	NM_001197327	116835		NM_052970	ENSG00000132622	HSPA12B	C20orf60	heat shock protein family A (Hsp70) member 12B	protein-coding
229108	chr9	114391621	114392230	+	0	NA	intron (NM_030767, intron 1 of 21)	intron (NM_030767, intron 1 of 21)	2480	NM_001317952	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
186628	chr5	138545501	138546130	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2579	NM_001364160	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
61850	chr13	76976451	76977150	+	0	NA	Intergenic	Intergenic	-15281	NM_001366624	1203		NM_006493	ENSG00000102805	CLN5	-	CLN5 intracellular trafficking protein	protein-coding
156382	chr22	41099171	41099330	+	0	NA	intron (NM_001362843, intron 1 of 29)	AluSg|SINE|Alu	6658	NM_001362843	2033		NM_001429	ENSG00000100393	EP300	KAT3B|MKHK2|RSTS2|p300	E1A binding protein p300	protein-coding
214965	chr7	151876801	151878400	+	0	NA	promoter-TSS (NM_016203)	promoter-TSS (NM_016203)	-485	NM_016203	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
169971	chr3	179318771	179318930	+	0	NA	Intergenic	AluJb|SINE|Alu	-4026	NM_001375806	51193		NM_016331	ENSG00000121864	ZNF639	ANC-2H01|ANC_2H01|ZASC1	zinc finger protein 639	protein-coding
10364	chr1	64948121	64948400	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	18289	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
86500	chr16	67041551	67041930	+	0	NA	intron (NM_001368708, intron 3 of 4)	L2a|LINE|L2	12591	NM_022845	865		NM_001755	ENSG00000067955	CBFB	CLCD2|PEBP2B	core-binding factor subunit beta	protein-coding
109045	chr18	79755771	79756130	+	0	NA	3' UTR (NM_048368, exon 12 of 12)	3' UTR (NM_048368, exon 12 of 12)	74520	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
25773	chr10	11147771	11148330	+	0	NA	intron (NM_001326334, intron 2 of 13)	intron (NM_001326334, intron 2 of 13)	-16831	NM_001326347	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
72479	chr15	32586721	32586980	+	0	NA	intron (NR_135833, intron 2 of 2)	intron (NR_135833, intron 2 of 2)	-6606	NM_001282494	643699		NM_001282494	ENSG00000232653	GOLGA8N	GOLGA8R	golgin A8 family member N	protein-coding
29359	chr10	69588421	69588680	+	0	NA	Intergenic	LTR50|LTR|ERVL	-15128	NM_020999	50674		NM_020999	ENSG00000122859	NEUROG3	Atoh5|Math4B|NGN-3|bHLHa7|ngn3	neurogenin 3	protein-coding
20931	chr1	202200351	202200450	+	0	NA	intron (NM_001017403, intron 1 of 17)	intron (NM_001017403, intron 1 of 17)	-3312	NM_021636	59352		NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding
195194	chr6	36093471	36093830	+	0	NA	intron (NM_001315, intron 8 of 11)	AluY|SINE|Alu	-36863	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
126195	chr2	26775221	26775680	+	0	NA	intron (NM_017877, intron 3 of 5)	intron (NM_017877, intron 3 of 5)	-10565	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
90624	chr17	1646401	1647150	+	0	NA	intron (NM_031430, intron 7 of 7)	intron (NM_031430, intron 7 of 7)	-1043	NM_003693	8578		NM_003693	ENSG00000074660	SCARF1	SREC|SREC-I|SREC1	scavenger receptor class F member 1	protein-coding
182175	chr5	56692371	56692730	+	0	NA	Intergenic	Intergenic	80321	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
47152	chr12	763151	763730	+	0	NA	intron (NM_018979, intron 1 of 27)	AluSq2|SINE|Alu	10517	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
150226	chr21	41170571	41170730	+	0	NA	intron (NM_138991, intron 1 of 7)	intron (NM_138991, intron 1 of 7)	2490	NM_012105	25825		NM_012105	ENSG00000182240	BACE2	AEPLC|ALP56|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-secretase 2	protein-coding
174537	chr4	40194671	40195650	+	0	NA	intron (NM_001278369, intron 1 of 2)	L4_A_Mam|LINE|RTE-X	1511	NM_001278369	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
60831	chr13	45400951	45401680	+	0	NA	intron (NM_001286806, intron 5 of 8)	intron (NM_001286806, intron 5 of 8)	-16847	NR_047031	100874259		NR_047031	ENSG00000251015	SLC25A30-AS1	-	SLC25A30 antisense RNA 1	ncRNA
28753	chr10	62007951	62008050	+	0	NA	intron (NM_032199, intron 4 of 9)	L2a|LINE|L2	-41357	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
64510	chr14	24368571	24369480	+	0	NA	promoter-TSS (NM_001363682)	promoter-TSS (NM_001363682)	27	NM_001288802	4776		NM_004554	ENSG00000100968	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T cells 4	protein-coding
162567	chr3	48658621	48659050	+	0	NA	intron (NM_001407, intron 1 of 34)	intron (NM_001407, intron 1 of 34)	4051	NM_001407	1951		NM_001407	ENSG00000008300	CELSR3	ADGRC3|CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1	cadherin EGF LAG seven-pass G-type receptor 3	protein-coding
192787	chr6	26550301	26551130	+	0	NA	Intergenic	CpG	12349	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
234182	chrX	11787401	11787880	+	0	NA	Intergenic	Intergenic	27993	NM_006800	10943		NM_006800	ENSG00000005302	MSL3	MRSXBA|MRXS36|MRXSBA|MSL3L1	MSL complex subunit 3	protein-coding
161494	chr3	42525751	42525850	+	0	NA	intron (NM_004624, intron 3 of 12)	intron (NM_004624, intron 3 of 12)	6806	NR_046654	100874007		NR_046654		VIPR1-AS1	-	VIPR1 antisense RNA 1	ncRNA
120203	chr19	42288771	42289280	+	0	NA	exon (NM_001304815, exon 8 of 21)	exon (NM_001304815, exon 8 of 21)	4556	NM_015125	23152		NM_015125	ENSG00000079432	CIC	MRD45	capicua transcriptional repressor	protein-coding
205841	chr7	24905071	24905580	+	0	NA	intron (NM_015550, intron 1 of 22)	L3|LINE|CR1	-12704	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
49167	chr12	14984321	14984900	+	0	NA	Intergenic	L1PA10|LINE|L1	11568	NM_006205	5149		NM_006205	ENSG00000139053	PDE6H	ACHM6|RCD3	phosphodiesterase 6H	protein-coding
169308	chr3	158725071	158725630	+	0	NA	intron (NM_206963, intron 1 of 5)	intron (NM_206963, intron 1 of 5)	7107	NM_206963	5918		NM_002888	ENSG00000118849	RARRES1	LXNL|PERG-1|TIG1	retinoic acid receptor responder 1	protein-coding
164263	chr3	57559771	57559930	+	0	NA	exon (NM_177966, exon 3 of 3)	exon (NM_177966, exon 3 of 3)	3576	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
21950	chr1	207958801	207959930	+	0	NA	intron (NR_167983, intron 1 of 2)	CpG	374	NR_167983	105372883		NR_167982		LINC02767	-	long intergenic non-protein coding RNA 2767	ncRNA
239225	chrY	12940021	12940280	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	34445	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
30207	chr10	74830371	74830780	+	0	NA	intron (NM_001370142, intron 1 of 16)	L1M5|LINE|L1	3975	NM_001370137	23522		NM_012330	ENSG00000156650	KAT6B	GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf	lysine acetyltransferase 6B	protein-coding
60138	chr13	39676301	39676600	+	0	NA	intron (NM_001145079, intron 4 of 18)	intron (NM_001145079, intron 4 of 18)	-12315	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
147147	chr20	56390321	56390580	+	0	NA	intron (NM_001323304, intron 1 of 9)	AluSp|SINE|Alu	1765	NM_001323303	6790		NM_003600	ENSG00000087586	AURKA	AIK|ARK1|AURA|BTAK|PPP1R47|STK15|STK6|STK7	aurora kinase A	protein-coding
238935	chrX	154762001	154763680	+	0	NA	promoter-TSS (NM_001142463)	promoter-TSS (NM_001142463)	-24	NM_001363	1736		NM_001363	ENSG00000130826	DKC1	CBF5|CHINE1|DKC|DKCX|NAP57|NOLA4|XAP101	dyskerin pseudouridine synthase 1	protein-coding
172233	chr4	1337371	1337900	+	0	NA	intron (NM_001297431, intron 5 of 6)	intron (NM_001297431, intron 5 of 6)	-9573	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
137512	chr2	197186371	197186730	+	0	NA	intron (NM_153697, intron 2 of 9)	AluJb|SINE|Alu	-11441	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
38914	chr11	47422351	47422650	+	0	NA	intron (NM_002804, intron 8 of 11)	intron (NM_002804, intron 8 of 11)	3939	NM_002804	5702		NM_002804	ENSG00000165916	PSMC3	DCIDP|RPT5|TBP1	proteasome 26S subunit, ATPase 3	protein-coding
82859	chr16	21523621	21524030	+	0	NA	Intergenic	Intergenic	-3381	NR_002594	387254		NM_199182		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo
83339	chr16	25012751	25013330	+	0	NA	intron (NM_018054, intron 1 of 18)	L2c|LINE|L2	2329	NM_001006634	55114		NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
45263	chr11	118001621	118002700	+	0	NA	TTS (NM_001558)	TTS (NM_001558)	15766	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
90977	chr17	2701571	2701730	+	0	NA	exon (NM_001366662, exon 5 of 26)	exon (NM_001366662, exon 5 of 26)	-8731	NR_106834	102465465		NR_106834	ENSG00000273606	MIR6776	hsa-mir-6776	microRNA 6776	ncRNA
146757	chr20	50844571	50845500	+	0	NA	intron (NM_198799, intron 4 of 4)	intron (NM_198799, intron 4 of 4)	49974	NM_198799	55653		NM_017843	ENSG00000124243	BCAS4	CNOL	breast carcinoma amplified sequence 4	protein-coding
132441	chr2	105842521	105842780	+	0	NA	intron (NM_001004722, intron 2 of 3)	intron (NM_001004722, intron 2 of 3)	-9197	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
2539	chr1	9725951	9726050	+	0	NA	intron (NM_001350234, intron 23 of 23)	AluSx|SINE|Alu	34533	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
195929	chr6	41846721	41847100	+	0	NA	intron (NM_001286554, intron 3 of 7)	L1MB2|LINE|L1	44965	NM_001384542	25862		NM_018561	ENSG00000164663	USP49	-	ubiquitin specific peptidase 49	protein-coding
42340	chr11	68504421	68505080	+	0	NA	intron (NM_001352362, intron 2 of 24)	intron (NM_001352362, intron 2 of 24)	43998	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
180179	chr5	1472801	1473000	+	0	NA	intron (NM_024830, intron 11 of 13)	intron (NM_024830, intron 11 of 13)	-27460	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
14028	chr1	120739771	120740330	+	0	NA	intron (NR_157049, intron 1 of 4)	intron (NR_157049, intron 1 of 4)	16111	NR_157049	101929796		NM_001396072	ENSG00000286106	NOTCH2NLR	NOTCH2NLD	notch 2 N-terminal like R	protein-coding
227563	chr9	92138051	92138630	+	0	NA	intron (NR_015444, intron 12 of 12)	intron (NR_015444, intron 12 of 12)	-3127	NR_027341	158314		NR_027341		LINC00475	C9orf44	long intergenic non-protein coding RNA 475	ncRNA
188349	chr5	151652021	151652380	+	0	NA	Intergenic	Intergenic	-24745	NR_109873	101927096		NR_109873	ENSG00000249035	CLMAT3	CTB-113P19.1|SPARC-AS1	colorectal liver metastasis associated transcript 3	ncRNA
69247	chr14	92905171	92905350	+	0	NA	TTS (NR_135253)	TTS (NR_135253)	2222	NR_135253	101929002		NR_135253	ENSG00000258499	LINC02287	-	long intergenic non-protein coding RNA 2287	ncRNA
142192	chr20	2923521	2923600	+	0	NA	intron (NM_001385318, intron 2 of 18)	AluSq|SINE|Alu	50079	NM_001385306	5786		NM_002836	ENSG00000132670	PTPRA	HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA	protein tyrosine phosphatase receptor type A	protein-coding
79043	chr16	79871	81150	+	0	NA	intron (NM_001015054, intron 2 of 3)	intron (NM_001015054, intron 2 of 3)	2285	NM_001015052	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
155354	chr22	38275401	38275800	+	0	NA	Intergenic	AluSz|SINE|Alu	-2590	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
162710	chr3	49002001	49002200	+	0	NA	intron (NM_177939, intron 3 of 8)	intron (NM_177939, intron 3 of 8)	-5291	NM_018031	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
216292	chr8	12590951	12591650	+	0	NA	intron (NR_047662, intron 6 of 8)	intron (NR_047662, intron 6 of 8)	74311	NR_047662	729732		NR_047662	ENSG00000283674	LOC729732	-	uncharacterized LOC729732	ncRNA
179405	chr4	184028521	184028850	+	0	NA	Intergenic	Intergenic	123378	NM_020225	56977		NM_020225	ENSG00000173320	STOX2	-	storkhead box 2	protein-coding
181224	chr5	39182101	39182700	+	0	NA	intron (NM_199335, intron 2 of 17)	intron (NM_199335, intron 2 of 17)	37163	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
15000	chr1	148148051	148148400	+	0	NA	intron (NM_001385469, intron 1 of 23)	intron (NM_001385469, intron 1 of 23)	4056	NM_001101663	200030		NM_183372	ENSG00000263956	NBPF11	NBPF24	NBPF member 11	protein-coding
13606	chr1	116381751	116382050	+	0	NA	intron (NM_001160233, intron 1 of 22)	AluSg7|SINE|Alu	-1470	NM_001160234	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
142049	chr20	1776821	1777480	+	0	NA	intron (NR_037142, intron 2 of 3)	CpG	2596	NR_037142	100289473		NR_037142	ENSG00000293374	LOC100289473	-	cytoskeleton associated protein 2-like pseudogene	pseudo
119453	chr19	40414821	40415430	+	0	NA	Intergenic	Intergenic	-1747	NM_181882	57716		NM_020956	ENSG00000105227	PRX	CMT4F	periaxin	protein-coding
4464	chr1	21347221	21347480	+	0	NA	Intergenic	Intergenic	-1846	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
103860	chr17	79737671	79738230	+	0	NA	exon (NM_178543, exon 5 of 6)	exon (NM_178543, exon 5 of 6)	7007	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
131159	chr2	91525451	91525930	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	134259	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
201157	chr6	142931551	142932230	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	13286	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
192619	chr6	26087441	26088400	+	0	NA	non-coding (NR_144383, exon 2 of 2)	non-coding (NR_144383, exon 2 of 2)	491	NM_139004	3077		NM_000410	ENSG00000010704	HFE	HFE1|HH|HLA-H|MVCD7|TFQTL2	homeostatic iron regulator	protein-coding
65143	chr14	45089451	45090430	+	0	NA	intron (NM_017922, intron 1 of 13)	intron (NM_017922, intron 1 of 13)	5824	NM_017922	55015		NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
94077	chr17	27526751	27526850	+	0	NA	intron (NM_014238, intron 2 of 20)	intron (NM_014238, intron 2 of 20)	54836	NM_014238	8844		NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding
10928	chr1	84143221	84143550	+	0	NA	promoter-TSS (NM_001300916)	promoter-TSS (NM_001300916)	-886	NM_182948	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
51874	chr12	53491751	53492050	+	0	NA	intron (NM_006301, intron 1 of 14)	AluSz|SINE|Alu	7558	NM_001193511	7786		NM_006301	ENSG00000139625	MAP3K12	DLK|HP09298|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding
35893	chr11	2405021	2405700	+	0	NA	intron (NM_014555, intron 23 of 23)	intron (NM_014555, intron 23 of 23)	4610	NM_005706	10078		NM_005706	ENSG00000184281	TSSC4	-	tumor suppressing subtransferable candidate 4	protein-coding
118528	chr19	36013571	36015150	+	0	NA	promoter-TSS (NM_198867)	promoter-TSS (NM_198867)	-121	NM_198867	84964		NM_032878	ENSG00000239382	ALKBH6	ABH6	alkB homolog 6	protein-coding
68660	chr14	90062371	90063050	+	0	NA	intron (NM_022054, intron 1 of 1)	MER5A1|DNA|hAT-Charlie	716	NM_022054	56659		NM_022054	ENSG00000152315	KCNK13	K2p13.1|THIK-1|THIK1	potassium two pore domain channel subfamily K member 13	protein-coding
167510	chr3	129247871	129248480	+	0	NA	Intergenic	L1ME4c|LINE|L1	-1431	NM_016128	22820		NM_016128	ENSG00000181789	COPG1	COPG	COPI coat complex subunit gamma 1	protein-coding
35922	chr11	2430251	2431500	+	0	NA	Intergenic	Intergenic	-7830	NM_014555	29850		NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding
88035	chr16	81403421	81404480	+	0	NA	Intergenic	Intergenic	18932	NR_039871	100616150		NR_039871	ENSG00000284473	MIR4720	-	microRNA 4720	ncRNA
228681	chr9	107484201	107484400	+	0	NA	TTS (NM_001314052)	TTS (NM_001314052)	5469	NM_004235	9314		NM_004235	ENSG00000136826	KLF4	EZF|GKLF	KLF transcription factor 4	protein-coding
202682	chr6	158795351	158795880	+	0	NA	intron (NM_003379, intron 1 of 12)	L2b|LINE|L2	-22364	NR_102425	101409257		NR_102425	ENSG00000233893	EZR-AS1	-	EZR antisense RNA 1	ncRNA
211914	chr7	112414971	112415230	+	0	NA	Intergenic	Intergenic	-8044	NM_001197080	3475		NM_001550	ENSG00000006652	IFRD1	PC4|TIS7	interferon related developmental regulator 1	protein-coding
222763	chr8	141528051	141528150	+	0	NA	Intergenic	Intergenic	-20870	NR_102363	389690		NM_207414	ENSG00000226807	MROH5	-	maestro heat like repeat family member 5 (gene/pseudogene)	protein-coding
32439	chr10	102583501	102584180	+	0	NA	intron (NM_001178133, intron 3 of 10)	L1PA4|LINE|L1	-60639	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
154873	chr22	37135971	37136830	+	0	NA	intron (NM_000878, intron 6 of 9)	intron (NM_000878, intron 6 of 9)	13516	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
77269	chr15	81410171	81410550	+	0	NA	intron (NR_120365, intron 6 of 6)	intron (NR_120365, intron 6 of 6)	-36147	NM_001080532	342125		NM_181841	ENSG00000188869	TMC3	-	transmembrane channel like 3	protein-coding
183407	chr5	77960621	77961130	+	0	NA	Intergenic	Intergenic	2628	NR_105013	101929154		NR_105012	ENSG00000287162	LOC101929154	-	uncharacterized LOC101929154	ncRNA
14156	chr1	121187951	121188450	+	0	NA	intron (NM_001271872, intron 2 of 9)	intron (NM_001271872, intron 2 of 9)	3225	NM_001271872	653464		NM_001271872	ENSG00000171943	SRGAP2C	SRGAP2P1	SLIT-ROBO Rho GTPase activating protein 2C	protein-coding
68695	chr14	90404801	90406030	+	0	NA	3' UTR (NM_001363670, exon 6 of 6)	3' UTR (NM_001363670, exon 6 of 6)	7165	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
164686	chr3	67605101	67605500	+	0	NA	intron (NM_001177599, intron 2 of 10)	intron (NM_001177599, intron 2 of 10)	49312	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
76792	chr15	77021671	77022680	+	0	NA	intron (NR_135552, intron 3 of 11)	intron (NR_135552, intron 3 of 11)	27049	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
161006	chr3	37321051	37321150	+	0	NA	intron (NM_001172713, intron 13 of 22)	intron (NM_001172713, intron 13 of 22)	-65169	NM_178344	339883		NM_178339	ENSG00000198590	APRG1	C3orf35	APRG1 tumor suppressor candidate	ncRNA
153926	chr22	30326061	30327730	+	0	NA	promoter-TSS (NM_001204240)	promoter-TSS (NM_001204240)	46	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
212855	chr7	130848601	130849000	+	0	NA	Intergenic	Intergenic	28010	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
218984	chr8	61753901	61754120	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	39222	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
1634	chr1	3773971	3774130	+	0	NA	intron (NM_001288583, intron 2 of 3)	intron (NM_001288583, intron 2 of 3)	1301	NM_001163724	388588		NM_001163724	ENSG00000235169	SMIM1	Vel	small integral membrane protein 1 (Vel blood group)	protein-coding
74383	chr15	58883071	58883430	+	0	NA	intron (NR_135043, intron 18 of 18)	AluSx|SINE|Alu	50429	NM_001013843	79811		NM_017968	ENSG00000137776	SLTM	Met	SAFB like transcription modulator	protein-coding
98082	chr17	45579651	45580430	+	0	NA	Intergenic	Intergenic	21822	NR_026901	644172		NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo
220833	chr8	102860021	102860700	+	0	NA	intron (NM_148174, intron 1 of 11)	AluSx3|SINE|Alu	3803	NM_001301668	51582		NM_015878	ENSG00000155096	AZIN1	AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding
113639	chr19	10334851	10335800	+	0	NA	exon (NM_002162, exon 4 of 7)	exon (NM_002162, exon 4 of 7)	-1796	NM_001366174	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
221611	chr8	125602651	125602750	+	0	NA	Intergenic	MIR3|SINE|MIR	170491	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
26832	chr10	24642701	24643180	+	0	NA	intron (NR_160021, intron 4 of 26)	intron (NR_160021, intron 4 of 26)	-20097	NR_160024	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
97166	chr17	42613871	42614400	+	0	NA	intron (NM_001070, intron 8 of 10)	intron (NM_001070, intron 8 of 10)	4452	NM_001070	7283		NM_001070	ENSG00000131462	TUBG1	CDCBM4|GCP-1|TUBG|TUBGCP1	tubulin gamma 1	protein-coding
215758	chr8	1992101	1992350	+	0	NA	intron (NM_014867, intron 1 of 1)	MIRb|SINE|MIR	18548	NM_014867	9920		NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
52983	chr12	57489721	57489980	+	0	NA	intron (NM_004990, intron 4 of 20)	intron (NM_004990, intron 4 of 20)	-1026	NM_001319850	64333		NM_032496	ENSG00000123329	ARHGAP9	10C|RGL1	Rho GTPase activating protein 9	protein-coding
222664	chr8	141192621	141192880	+	0	NA	exon (NM_001362798, exon 22 of 22)	exon (NM_001362798, exon 22 of 22)	35824	NM_001286648	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
174316	chr4	38655071	38655700	+	0	NA	intron (NR_026804, intron 1 of 7)	intron (NR_026804, intron 1 of 7)	-8814	NM_016531	51274		NM_016531	ENSG00000109787	KLF3	BKLF	KLF transcription factor 3	protein-coding
83137	chr16	23060701	23060930	+	0	NA	TTS (NM_020718)	TTS (NM_020718)	88455	NM_020718	57478		NM_020718	ENSG00000103404	USP31	-	ubiquitin specific peptidase 31	protein-coding
177369	chr4	110527171	110527330	+	0	NA	intron (NR_166844, intron 9 of 19)	intron (NR_166844, intron 9 of 19)	51095	NM_001379613	2028		NM_001977	ENSG00000138792	ENPEP	APA|CD249|gp160	glutamyl aminopeptidase	protein-coding
166483	chr3	114294871	114295530	+	0	NA	intron (NM_173799, intron 1 of 3)	intron (NM_173799, intron 1 of 3)	1172	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
135349	chr2	160401951	160402350	+	0	NA	intron (NM_016836, intron 1 of 13)	MIRb|SINE|MIR	5732	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
197587	chr6	79984351	79984450	+	0	NA	Intergenic	Intergenic	-20205	NM_001166691	7272		NM_003318	ENSG00000112742	TTK	CT96|ESK|MPH1|MPS1|MPS1L1|PYT	TTK protein kinase	protein-coding
205347	chr7	12692101	12692300	+	0	NA	Intergenic	Intergenic	4567	NM_005738	10124		NM_005738	ENSG00000122644	ARL4A	ARL4	ADP ribosylation factor like GTPase 4A	protein-coding
157175	chr22	43007651	43008200	+	0	NA	intron (NM_001184970, intron 1 of 10)	intron (NM_001184970, intron 1 of 10)	7224	NM_001184970	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
184171	chr5	95781001	95781450	+	0	NA	intron (NM_014899, intron 9 of 11)	intron (NM_014899, intron 9 of 11)	41501	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
55664	chr12	107352571	107352980	+	0	NA	intron (NM_001347944, intron 1 of 14)	intron (NM_001347944, intron 1 of 14)	32187	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
205223	chr7	7971851	7972500	+	0	NA	intron (NM_138426, intron 1 of 7)	intron (NM_138426, intron 1 of 7)	3379	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
28273	chr10	45983521	45983850	+	0	NA	promoter-TSS (NR_145721)	promoter-TSS (NR_145721)	-923	NR_145721	109616974		NR_145721	ENSG00000265733	SNORA74C-1	-	small nucleolar RNA, H/ACA box 74C-1	snoRNA
199460	chr6	117675051	117676450	+	0	NA	promoter-TSS (NR_110854)	promoter-TSS (NR_110854)	281	NM_138459	116150		NM_138459	ENSG00000153989	NUS1	C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding
167767	chr3	132721751	132723500	+	0	NA	promoter-TSS (NR_037804)	promoter-TSS (NR_037804)	-166	NR_037804	100532724		NR_037804	ENSG00000274810	NPHP3-ACAD11	NPHP3	NPHP3-ACAD11 readthrough (NMD candidate)	ncRNA
125672	chr2	20224771	20224930	+	0	NA	exon (NM_002997, exon 1 of 5)	exon (NM_002997, exon 1 of 5)	280	NM_002997	6382		NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding
175590	chr4	75669921	75670400	+	0	NA	intron (NM_203505, intron 1 of 11)	intron (NM_203505, intron 1 of 11)	2999	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
238502	chrX	153641921	153642680	+	0	NA	promoter-TSS (NM_001395)	promoter-TSS (NM_001395)	-141	NM_001395	1852		NM_001395	ENSG00000130829	DUSP9	MKP-4|MKP4	dual specificity phosphatase 9	protein-coding
223302	chr8	143802651	143803500	+	0	NA	intron (NM_182706, intron 24 of 36).2	intron (NM_182706, intron 24 of 36).2	9967	NR_030633	100126338		NR_030633	ENSG00000284224	MIR937	MIRN937|hsa-mir-937|mir-937	microRNA 937	ncRNA
230256	chr9	127903321	127904030	+	0	NA	intron (NM_001287002, intron 1 of 5)	intron (NM_001287002, intron 1 of 5)	1673	NM_001287002	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
54522	chr12	92115821	92116730	+	0	NA	intron (NR_132341, intron 1 of 4)	Arthur1|DNA|hAT-Tip100	25438	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
163474	chr3	50632201	50633080	+	0	NA	intron (NM_001243926, intron 4 of 12)	intron (NM_001243926, intron 4 of 12)	15489	NM_001243925	7867		NM_004635	ENSG00000114738	MAPKAPK3	3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3|MK3	MAPK activated protein kinase 3	protein-coding
212961	chr7	130956771	130957600	+	0	NA	intron (NR_109853, intron 4 of 5)	intron (NR_109853, intron 4 of 5)	43721	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
224210	chr9	5568951	5569400	+	0	NA	intron (NM_025239, intron 6 of 6)	LTR33|LTR|ERVL	58644	NM_025239	80380		NM_025239	ENSG00000197646	PDCD1LG2	B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2	programmed cell death 1 ligand 2	protein-coding
199791	chr6	126339801	126340750	+	0	NA	non-coding (NR_104462, exon 1 of 4)	non-coding (NR_104462, exon 1 of 4)	160	NR_104462	387103		NM_001012507	ENSG00000203760	CENPW	C6orf173|CENP-W|CUG2	centromere protein W	protein-coding
132712	chr2	109046151	109046450	+	0	NA	Intergenic	AluSc8|SINE|Alu	-57080	NM_022336	10913		NM_022336	ENSG00000135960	EDAR	DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1	ectodysplasin A receptor	protein-coding
76981	chr15	78264271	78265580	+	0	NA	intron (NM_018602, intron 2 of 7)	CpG	278	NM_001130182	55466		NM_018602	ENSG00000140403	DNAJA4	MST104|MSTP104|PRO1472	DnaJ heat shock protein family (Hsp40) member A4	protein-coding
49369	chr12	22393001	22393200	+	0	NA	Intergenic	Intergenic	-58386	NM_001304450	6489		NM_003034	ENSG00000111728	ST8SIA1	GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
151144	chr21	44909071	44909430	+	0	NA	intron (NM_001127491, intron 3 of 15)	L1MC4|LINE|L1	11649	NM_000211	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
96836	chr17	41971821	41972280	+	0	NA	intron (NM_033133, intron 3 of 3)	intron (NM_033133, intron 3 of 3)	4253	NM_001330216	1267		NM_033133	ENSG00000173786	CNP	CNP1|HLD20	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
27162	chr10	28487171	28487430	+	0	NA	intron (NR_134496, intron 1 of 2)	LOR1b|LTR|ERV1	8513	NR_134496	105376468		NR_134496	ENSG00000237128	LINC02652	-	long intergenic non-protein coding RNA 2652	ncRNA
28086	chr10	43375571	43375930	+	0	NA	intron (NM_173160, intron 7 of 8)	intron (NM_173160, intron 7 of 8)	4106	NM_001184963	53828		NM_173160	ENSG00000150201	FXYD4	CHIF	FXYD domain containing ion transport regulator 4	protein-coding
219320	chr8	70147931	70148380	+	0	NA	intron (NM_001321713, intron 11 of 21)	intron (NM_001321713, intron 11 of 21)	-76903	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
171181	chr3	195671351	195671450	+	0	NA	intron (NR_003265, intron 8 of 14)	intron (NR_003265, intron 8 of 14)	13361	NR_003265	727956		NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	SDHA pseudogene 2	pseudo
163102	chr3	50111271	50113250	+	0	NA	intron (NR_036627, intron 16 of 23)	AluY|SINE|Alu	-11272	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
48763	chr12	11500471	11500960	+	0	NA	Intergenic	CpG	-14037	NR_148969	440084		NR_148969		LOC440084	-	uncharacterized LOC440084	ncRNA
159255	chr3	12935021	12935480	+	0	NA	intron (NM_014869, intron 3 of 13)	intron (NM_014869, intron 3 of 13)	32480	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
95605	chr17	37511371	37512100	+	0	NA	intron (NM_007026, intron 2 of 2)	AluJb|SINE|Alu	21844	NM_007026	11072		NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding
16122	chr1	153646821	153647580	+	0	NA	TTS (NM_001206612)	TTS (NM_001206612)	-11454	NR_052020	23557		NM_012437	ENSG00000143553	SNAPIN	BLOC1S7|BLOS7|BORCS3|SNAPAP	SNAP associated protein	protein-coding
61418	chr13	51811871	51812230	+	0	NA	Intergenic	LTR53B|LTR|ERVL	-7887	NM_001031719	79758		NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding
73745	chr15	45334451	45334550	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	44044	NM_001482	2628		NM_001482	ENSG00000171766	GATM	AGAT|AT|CCDS3|FRTS|FRTS1|RFS	glycine amidinotransferase	protein-coding
8756	chr1	42710521	42710780	+	0	NA	Intergenic	AluSc|SINE|Alu	27514	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
41995	chr11	67389301	67390100	+	0	NA	intron (NR_024469, intron 3 of 3)	L2b|LINE|L2	-2286	NM_004584	5883		NM_004584	ENSG00000172613	RAD9A	RAD9	RAD9 checkpoint clamp component A	protein-coding
134445	chr2	143157571	143158080	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	28406	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
29157	chr10	68719301	68719700	+	0	NA	Intergenic	L1MB7|LINE|L1	-1739	NM_001282960	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
177063	chr4	108035901	108036900	+	0	NA	Intergenic	Intergenic	31736	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
135043	chr2	156331651	156333700	+	0	NA	promoter-TSS (NM_006186)	promoter-TSS (NM_006186)	46	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
142076	chr20	2450471	2451030	+	0	NA	Intergenic	L2a|LINE|L2	12297	NR_003684	100113378		NR_003684		SNORD119	-	small nucleolar RNA, C/D box 119	snoRNA
200470	chr6	135159651	135159750	+	0	NA	Intergenic	Intergenic	-21608	NR_134964	4602		NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding
123754	chr19	55079351	55079550	+	0	NA	promoter-TSS (NM_017729).3	promoter-TSS (NM_017729).3	-942	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
113701	chr19	10420501	10422850	+	0	NA	intron (NM_001111307, intron 1 of 14)	intron (NM_001111307, intron 1 of 14)	1137	NM_001111307	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
41960	chr11	67344051	67344580	+	0	NA	intron (NR_024469, intron 2 of 3)	L1ME4b|LINE|L1	9231	NM_021173	57804		NM_021173	ENSG00000175482	POLD4	POLDS|p12	DNA polymerase delta 4, accessory subunit	protein-coding
178111	chr4	141132951	141133450	+	0	NA	5' UTR (NM_020724, exon 1 of 7)	5' UTR (NM_020724, exon 1 of 7)	269	NM_020724	57484		NM_020724	ENSG00000170153	RNF150	-	ring finger protein 150	protein-coding
37558	chr11	18726201	18726400	+	0	NA	promoter-TSS (NM_173588)	promoter-TSS (NM_173588)	-112	NR_160413	283284		NM_173588	ENSG00000179057	IGSF22	IGFN2	immunoglobulin superfamily member 22	protein-coding
7430	chr1	32967321	32967850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2776	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
36494	chr11	6389751	6391850	+	0	NA	exon (NM_001365135, exon 1 of 5)	exon (NM_001365135, exon 1 of 5)	326	NR_027400	6609		NM_000543	ENSG00000166311	SMPD1	ASM|ASMASE|NPD	sphingomyelin phosphodiesterase 1	protein-coding
124234	chr19	57351041	57351930	+	0	NA	5' UTR (NM_001290318, exon 1 of 4)	5' UTR (NM_001290318, exon 1 of 4)	211	NM_001329456	57343		NM_020657	ENSG00000131845	ZNF304	-	zinc finger protein 304	protein-coding
219577	chr8	79760851	79761400	+	0	NA	Intergenic	Intergenic	5350	NM_001282851	23462		NM_012258	ENSG00000164683	HEY1	BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1	hes related family bHLH transcription factor with YRPW motif 1	protein-coding
188376	chr5	151924601	151924950	+	0	NA	promoter-TSS (NM_001146040)	promoter-TSS (NM_001146040)	76	NM_001146040	2741		NM_000171	ENSG00000145888	GLRA1	HKPX1|STHE	glycine receptor alpha 1	protein-coding
25253	chr10	6060601	6061230	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	1452	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
197806	chr6	87700421	87701200	+	0	NA	intron (NM_018064, intron 1 of 4)	intron (NM_018064, intron 1 of 4)	1423	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
99220	chr17	49576671	49577950	+	0	NA	intron (NM_007225, intron 1 of 1)	intron (NM_007225, intron 1 of 1)	1439	NM_007225	11248		NM_007225	ENSG00000182575	NXPH3	NPH3	neurexophilin 3	protein-coding
150077	chr21	37404221	37404680	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	-14455	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
204748	chr7	5583451	5584580	+	0	NA	Intergenic	AluJr|SINE|Alu	-8801	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
180146	chr5	1347551	1347650	+	0	NA	Intergenic	Intergenic	-2501	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
5290	chr1	25118771	25119130	+	0	NA	Intergenic	Intergenic	95447	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
111930	chr19	4730421	4731150	+	0	NA	Intergenic	L2a|LINE|L2	-6943	NR_169285	91039		NM_139159	ENSG00000142002	DPP9	DP9|DPLP9|DPP IX|DPRP-2|DPRP2|HATIS|IMD111	dipeptidyl peptidase 9	protein-coding
56556	chr12	117025401	117026230	+	0	NA	intron (NM_012174, intron 9 of 10)	intron (NM_012174, intron 9 of 10)	-38478	NR_103809	100506551		NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA
214357	chr7	149600721	149601380	+	0	NA	intron (NR_027788, intron 3 of 7)	AluSp|SINE|Alu	23740	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
18149	chr1	160755601	160756880	+	0	NA	Intergenic	Intergenic	16993	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
63629	chr14	20679951	20680350	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-4027	NM_001145	283		NM_001145	ENSG00000214274	ANG	ALS9|HEL168|RAA1|RNASE4|RNASE5	angiogenin	protein-coding
145128	chr20	38813871	38814030	+	0	NA	intron (NM_001172735, intron 1 of 9)	AluSx1|SINE|Alu	8253	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
59578	chr13	27446601	27447800	+	0	NA	intron (NM_001166263, intron 1 of 5)	A-rich|Low_complexity|Low_complexity	2989	NM_001166262	219402		NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding
224037	chr9	3483571	3483730	+	0	NA	intron (NM_001282116, intron 1 of 16)	intron (NM_001282116, intron 1 of 16)	5784	NM_001282117	5991		NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding
123903	chr19	55342221	55343330	+	0	NA	exon (NM_032701, exon 4 of 9)	exon (NM_032701, exon 4 of 9)	2899	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
66932	chr14	65462501	65462700	+	0	NA	intron (NM_004480, intron 2 of 9)	intron (NM_004480, intron 2 of 9)	-8502	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
67607	chr14	72594201	72594880	+	0	NA	Intergenic	Intergenic	77720	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
12812	chr1	109912071	109912230	+	0	NA	intron (NM_172210, intron 1 of 8)	intron (NM_172210, intron 1 of 8)	1301	NM_172210	1435		NM_000757	ENSG00000184371	CSF1	CSF-1|MCSF|PG-M-CSF	colony stimulating factor 1	protein-coding
81267	chr16	4628401	4628600	+	0	NA	intron (NM_001142291, intron 1 of 15)	L1ME1|LINE|L1	3674	NM_015246	23295		NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding
72600	chr15	35673201	35673400	+	0	NA	intron (NR_038251, intron 1 of 2)	intron (NR_038251, intron 1 of 2)	127105	NR_038251	100507466		NR_038251		DPH6-DT	ATPBD4-AS1|DPH6-AS1	DPH6 divergent transcript	ncRNA
235324	chrX	43480301	43480500	+	0	NA	Intergenic	MIRb|SINE|MIR	-174507	NM_001270458	4128		NM_000240	ENSG00000189221	MAOA	BRNRS|MAO-A	monoamine oxidase A	protein-coding
14398	chr1	144247901	144248180	+	0	NA	non-coding (NR_027354, exon 1 of 4).2	non-coding (NR_027354, exon 1 of 4).2	165	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
123653	chr19	54792801	54793150	+	0	NA	intron (NR_110738, intron 3 of 3)	L1MEg|LINE|L1	-10561	NM_001368253	112268354		NM_001368253		LOC112268354	-	killer cell immunoglobulin-like receptor 2DL4-like	protein-coding
210859	chr7	101122751	101123050	+	0	NA	Intergenic	Intergenic	-4204	NM_000602	5054		NM_000602	ENSG00000106366	SERPINE1	PAI|PAI-1|PAI1|PLANH1	serpin family E member 1	protein-coding
2502	chr1	9692921	9693380	+	0	NA	intron (NM_001350234, intron 2 of 23)	intron (NM_001350234, intron 2 of 23)	1683	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
143888	chr20	32572901	32574030	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	11868	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
124380	chr19	58384801	58385000	+	0	NA	Intergenic	Intergenic	1958	NR_039910	100616168		NR_039910	ENSG00000266640	MIR4754	mir-4754	microRNA 4754	ncRNA
33048	chr10	110858471	110859230	+	0	NA	Intergenic	MIRb|SINE|MIR	12054	NR_026932	282997		NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
186501	chr5	138334421	138334500	+	0	NA	intron (NR_146628, intron 2 of 3)	AluSq2|SINE|Alu	2355	NR_146628	100128966		NR_146628	ENSG00000120709	LOC100128966	-	uncharacterized LOC100128966	ncRNA
3826	chr1	16879771	16880650	+	0	NA	Intergenic	Intergenic	7984	NR_160657	112267871		NR_160657	ENSG00000228549	LINC03126	-	long intergenic non-protein coding RNA 3126	ncRNA
155211	chr22	37857521	37857780	+	0	NA	intron (NM_001242923, intron 4 of 10)	AluSx1|SINE|Alu	8231	NM_016091	51386		NM_016091	ENSG00000100129	EIF3L	EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005	eukaryotic translation initiation factor 3 subunit L	protein-coding
115291	chr19	14569471	14569850	+	0	NA	intron (NM_004146, intron 1 of 2)	intron (NM_004146, intron 1 of 2)	2406	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
174425	chr4	39456351	39456880	+	0	NA	intron (NM_000661, intron 4 of 7)	intron (NM_000661, intron 4 of 7)	2307	NM_000661	6133		NM_000661	ENSG00000163682	RPL9	L9|NPC-A-16|uL6	ribosomal protein L9	protein-coding
175023	chr4	52656801	52657400	+	0	NA	promoter-TSS (NM_001134223)	promoter-TSS (NM_001134223)	-561	NM_001134223	64854		NM_022832	ENSG00000109189	USP46	-	ubiquitin specific peptidase 46	protein-coding
51364	chr12	51820421	51822180	+	0	NA	exon (NM_001013690, exon 2 of 2)	exon (NM_001013690, exon 2 of 2)	10617	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
119188	chr19	39427871	39428550	+	0	NA	3' UTR (NM_001351693, exon 20 of 20)	3' UTR (NM_001351693, exon 20 of 20)	7739	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
160985	chr3	37229051	37229150	+	0	NA	Intergenic	Intergenic	-14171	NM_002078	2803		NM_002078	ENSG00000144674	GOLGA4	CRPF46|GCP2|GOLG|MU-RMS-40.18|p230	golgin A4	protein-coding
44604	chr11	108499351	108499450	+	0	NA	Intergenic	Intergenic	-1016	NM_153705	143888		NM_153705	ENSG00000178202	POGLUT3	KDELC2	protein O-glucosyltransferase 3	protein-coding
49661	chr12	29103301	29104000	+	0	NA	Intergenic	L2c|LINE|L2	-45628	NM_001271783	55711		NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding
91456	chr17	4809201	4809400	+	0	NA	exon (NM_001243108, exon 6 of 25)	exon (NM_001243108, exon 6 of 25)	2148	NM_002663	5338		NM_002663	ENSG00000129219	PLD2	PLD1C	phospholipase D2	protein-coding
88258	chr16	82653571	82654400	+	0	NA	intron (NM_001220488, intron 2 of 14)	intron (NM_001220488, intron 2 of 14)	27016	NM_001220492	1012		NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding
196021	chr6	42025321	42026000	+	0	NA	intron (NM_001136017, intron 1 of 4)	intron (NM_001136017, intron 1 of 4)	23234	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
145210	chr20	38902471	38903000	+	0	NA	exon (NM_015568, exon 6 of 11)	exon (NM_015568, exon 6 of 11)	-23682	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
4359	chr1	20678471	20678930	+	0	NA	intron (NM_020816, intron 11 of 14)	intron (NM_020816, intron 11 of 14)	-17331	NM_005216	1650		NM_005216	ENSG00000244038	DDOST	AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein-coding
164328	chr3	57806771	57807130	+	0	NA	intron (NR_165328, intron 2 of 22)	L1PA8|LINE|L1	49694	NM_001304421	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
112015	chr19	5032601	5032880	+	0	NA	intron (NM_001370093, intron 2 of 11)	CpG	63627	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
106842	chr18	24029251	24029750	+	0	NA	intron (NM_001135993, intron 1 of 13)	intron (NM_001135993, intron 1 of 13)	-14040	NR_110796	102724246		NR_110796	ENSG00000264745	TTC39C-AS1	-	TTC39C antisense RNA 1	ncRNA
152095	chr22	19844421	19845280	+	0	NA	intron (NM_053004, intron 2 of 7)	intron (NM_053004, intron 2 of 7)	10024	NM_053004	54584		NM_053004	ENSG00000185838	GNB1L	DGCRK3|FKSG1|GY2|WDR14|WDVCF	G protein subunit beta 1 like	protein-coding
114884	chr19	13885851	13886500	+	0	NA	intron (NM_001345848, intron 5 of 7)	intron (NM_001345848, intron 5 of 7)	8926	NM_001098622	342977		NM_001098622	ENSG00000187556	NANOS3	NANOS1L|NOS3|ZC2HC12C	nanos C2HC-type zinc finger 3	protein-coding
21234	chr1	204206871	204207430	+	0	NA	intron (NM_198447, intron 1 of 4)	intron (NM_198447, intron 1 of 4)	6838	NM_198447	127845		NM_198447	ENSG00000174567	GOLT1A	CGI-141|GOT1|GOT1B|HMFN1187|YMR292W|hGOT1b	golgi transport 1A	protein-coding
133157	chr2	112723201	112723400	+	0	NA	intron (NM_001350494, intron 7 of 16)	intron (NM_001350494, intron 7 of 16)	1814	NM_001350494	284958		NM_001350494	ENSG00000144130	NT5DC4	-	5'-nucleotidase domain containing 4	protein-coding
150393	chr21	42299321	42299780	+	0	NA	Intergenic	Intergenic	15859	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
110313	chr19	1846251	1846350	+	0	NA	intron (NM_020695, intron 1 of 15)	intron (NM_020695, intron 1 of 15)	2183	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
56752	chr12	120147271	120147630	+	0	NA	intron (NM_006836, intron 37 of 57)	intron (NM_006836, intron 37 of 57)	8049	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
203159	chr6	167045771	167046150	+	0	NA	3' UTR (NM_007045, exon 13 of 13)	3' UTR (NM_007045, exon 13 of 13)	46563	NM_194429	11116		NM_007045	ENSG00000213066	CEP43	FGFR1OP|FOP	centrosomal protein 43	protein-coding
127930	chr2	46477351	46477850	+	0	NA	Intergenic	L1PA5|LINE|L1	-1965	NM_001145051	388946		NM_001145051	ENSG00000284701	TMEM247	-	transmembrane protein 247	protein-coding
147168	chr20	56444151	56444450	+	0	NA	intron (NM_020356, intron 2 of 5)	intron (NM_020356, intron 2 of 5)	-24285	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
231860	chr9	132881771	132882130	+	0	NA	intron (NM_018956, intron 1 of 4)	intron (NM_018956, intron 1 of 4)	-2904	NM_001371771	158067		NM_152572	ENSG00000165695	AK8	AK 8|C9orf98|DDX31	adenylate kinase 8	protein-coding
183922	chr5	87397851	87398300	+	0	NA	intron (NM_001239, intron 7 of 8)	intron (NM_001239, intron 7 of 8)	14829	NM_001199189	902		NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding
129849	chr2	72917251	72918130	+	0	NA	5' UTR (NM_004097, exon 1 of 3)	5' UTR (NM_004097, exon 1 of 3)	171	NM_004097	2016		NM_004097	ENSG00000135638	EMX1	-	empty spiracles homeobox 1	protein-coding
92654	chr17	10614571	10614830	+	0	NA	intron (NR_125367, intron 10 of 10)	intron (NR_125367, intron 10 of 10)	42609	NM_002470	4621		NM_002470	ENSG00000109063	MYH3	CPSFS1A|CPSFS1B|CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE	myosin heavy chain 3	protein-coding
53533	chr12	67268321	67270330	+	0	NA	promoter-TSS (NM_001329676)	promoter-TSS (NM_001329676)	-33	NM_001329674	55832		NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding
32087	chr10	101134501	101135600	+	0	NA	intron (NM_005521, intron 2 of 2)	CpG-3272	3750	NM_005521	3195		NM_005521	ENSG00000107807	TLX1	HOX11|TCL3	T cell leukemia homeobox 1	protein-coding
42019	chr11	67418621	67419660	+	0	NA	exon (NM_020811, exon 4 of 9)	exon (NM_020811, exon 4 of 9)	3462	NM_001166222	57571		NM_020811	ENSG00000172508	CARNS1	ATPGD1	carnosine synthase 1	protein-coding
162548	chr3	48642151	48642450	+	0	NA	intron (NM_001407, intron 31 of 34)	intron (NM_001407, intron 31 of 34)	1980	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
156639	chr22	41622871	41623050	+	0	NA	intron (NM_001288978, intron 2 of 11)	L1ME4a|LINE|L1	1665	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
64845	chr14	35201971	35202330	+	0	NA	intron (NM_001256678, intron 4 of 6)	AluYc|SINE|Alu	-76408	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
116926	chr19	18834101	18834650	+	0	NA	intron (NM_001297549, intron 1 of 23)	intron (NM_001297549, intron 1 of 23)	2416	NM_002911	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
237364	chrX	118973351	118973650	+	0	NA	Intergenic	Intergenic	-1114	NR_110311	79836		NM_024778	ENSG00000175556	LONRF3	RNF127	LON peptidase N-terminal domain and ring finger 3	protein-coding
234205	chrX	12955901	12956600	+	0	NA	Intergenic	Intergenic	-12950	NR_030727	349408		NR_030727	ENSG00000233338	TLR8-AS1	GS1-324M7.6	TLR8 antisense RNA 1	ncRNA
21452	chr1	205485251	205486030	+	0	NA	Intergenic	Intergenic	-19029	NM_002596	5129		NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding
79084	chr16	173571	174380	+	0	NA	TTS (NM_000517)	TTS (NM_000517)	1099	NM_000517	3040		NM_000517	ENSG00000188536	HBA2	ECYT7|HBA-T2|HBH	hemoglobin subunit alpha 2	protein-coding
201100	chr6	142847751	142848180	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	97211	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
37445	chr11	17991801	17992150	+	0	NA	intron (NR_104041, intron 7 of 9)	intron (NR_104041, intron 7 of 9)	21072	NR_104041	26297		NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
145037	chr20	38094151	38095080	+	0	NA	Intergenic	Intergenic	60869	NM_021215	58490		NM_021215	ENSG00000101413	RPRD1B	C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2	regulation of nuclear pre-mRNA domain containing 1B	protein-coding
104086	chr17	80256121	80256580	+	0	NA	Intergenic	AluSz|SINE|Alu	-4502	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
227914	chr9	94173671	94174580	+	0	NA	Intergenic	MER21B|LTR|ERVL	-1832	NR_029476	406881		NR_029476	ENSG00000199165	MIRLET7A1	LET7A1|MIRNLET7A1|let-7a-1	microRNA let-7a-1	ncRNA
101606	chr17	68179901	68181100	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18160	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
150099	chr21	37437751	37438280	+	0	NA	intron (NM_101395, intron 3 of 12)	L1ME1|LINE|L1	17716	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
110019	chr19	1443701	1444200	+	0	NA	Intergenic	Intergenic	5554	NM_001308226	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
63321	chr13	114006621	114006880	+	0	NA	intron (NM_001320822, intron 18 of 23).2	intron (NM_001320822, intron 18 of 23).2	-32674	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
100503	chr17	62040651	62040980	+	0	NA	intron (NM_005121, intron 3 of 29)	L1MB4|LINE|L1	24463	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
24945	chr10	1359301	1359900	+	0	NA	intron (NM_018702, intron 3 of 9)	intron (NM_018702, intron 3 of 9)	-167030	NR_033387	642394		NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168	ADARB2 antisense RNA 1	ncRNA
224128	chr9	4689851	4689950	+	0	NA	intron (NM_017913, intron 3 of 6)	ERVL-E-int|LTR|ERVL	10331	NM_017913	55664		NM_017913	ENSG00000106993	CDC37L1	CDC37B|HARC	cell division cycle 37 like 1, HSP90 cochaperone	protein-coding
147196	chr20	57332171	57332330	+	0	NA	intron (NM_012444, intron 2 of 12)	L4_A_Mam|LINE|RTE-X	2447	NM_012444	23626		NM_012444	ENSG00000054796	SPO11	CT35|SPATA43|TOPOVIA|TOPVIA	SPO11 initiator of meiotic double strand breaks	protein-coding
150142	chr21	38323871	38324030	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	22126	NR_110545	102724678		NR_110545		LINC01423	-	long intergenic non-protein coding RNA 1423	ncRNA
217611	chr8	29875151	29875250	+	0	NA	Intergenic	Intergenic	-46313	NR_024473	286135		NR_024473	ENSG00000253279	LINC02209	FAM183CP	long intergenic non-protein coding RNA 2209	ncRNA
101956	chr17	74612571	74613100	+	0	NA	intron (NM_181449, intron 3 of 3)	intron (NM_181449, intron 3 of 3)	10903	NM_181449	342510		NM_181449	ENSG00000186407	CD300E	CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2	CD300e molecule	protein-coding
65184	chr14	49620081	49621490	+	0	NA	promoter-TSS (NM_002408)	promoter-TSS (NM_002408)	-14	NM_002408	4247		NM_002408	ENSG00000168282	MGAT2	CDG2A|CDGS2|GLCNACTII|GNT-II|GNT2	alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
183044	chr5	73381351	73382150	+	0	NA	Intergenic	CpG	43844	NR_146627	105379033		NR_146627		LINC02230	-	long intergenic non-protein coding RNA 2230	ncRNA
31500	chr10	96670421	96672000	+	0	NA	intron (NM_152309, intron 2 of 16)	intron (NM_152309, intron 2 of 16)	49304	NM_152309	118788		NM_152309	ENSG00000155629	PIK3AP1	BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding
51928	chr12	53701651	53702450	+	0	NA	Intergenic	Intergenic	25402	NR_026554	57658		NM_020898	ENSG00000012822	CALCOCO1	Cocoa|PP13275|calphoglin	calcium binding and coiled-coil domain 1	protein-coding
80829	chr16	3484501	3484730	+	0	NA	TTS (NR_106741)	TTS (NR_106741)	854	NR_106741	102465134		NR_106741	ENSG00000273776	MIR6126	hsa-mir-6126	microRNA 6126	ncRNA
194662	chr6	33631121	33631630	+	0	NA	non-coding (NR_134628, exon 2 of 2)	non-coding (NR_134628, exon 2 of 2)	2370	NR_134628	101929188		NR_134628		ITPR3-AS1	-	ITPR3 antisense RNA 1	ncRNA
76596	chr15	75358221	75358850	+	0	NA	exon (NM_006715, exon 20 of 26)	exon (NM_006715, exon 20 of 26)	-4850	NR_030360	693216		NR_030360	ENSG00000284343	MIR631	MIRN631|hsa-mir-631	microRNA 631	ncRNA
10874	chr1	78007771	78008130	+	0	NA	intron (NM_001317103, intron 1 of 1)	intron (NM_001317103, intron 1 of 1)	3011	NM_007034	11080		NM_007034	ENSG00000162616	DNAJB4	CMYP21|DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding
46897	chr11	134071851	134073230	+	0	NA	intron (NM_032801, intron 1 of 8)	AluSz|SINE|Alu	3468	NM_032801	83700		NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding
229824	chr9	125743321	125743580	+	0	NA	TTS (NR_122032)	TTS (NR_122032)	2479	NR_122032	51145		NM_016158		PBX3-DT	-	PBX3 divergent transcript	ncRNA
767	chr1	1514121	1514780	+	0	NA	intron (NM_001170536, intron 1 of 15)	intron (NM_001170536, intron 1 of 15)	1920	NM_001170536	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
207263	chr7	43924801	43925000	+	0	NA	intron (NM_001290076, intron 1 of 6)	AluJb|SINE|Alu	1511	NM_001077664	55665		NM_017920	ENSG00000106608	URGCP	URG4	upregulator of cell proliferation	protein-coding
165727	chr3	104564151	104564330	+	0	NA	Intergenic	Intergenic	-802473	NM_001243283	214		NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
210283	chr7	99421571	99421800	+	0	NA	intron (NM_015545, intron 7 of 7)	AluSg4|SINE|Alu	12513	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
91305	chr17	4263151	4265080	+	0	NA	promoter-TSS (NM_016376)	promoter-TSS (NM_016376)	-136	NR_047571	51479		NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
17613	chr1	156921751	156922250	+	0	NA	intron (NM_144702, intron 1 of 14)	L2a|LINE|L2	1368	NM_144702	149499		NM_144702	ENSG00000160838	LRRC71	C1orf92	leucine rich repeat containing 71	protein-coding
146700	chr20	50551371	50551530	+	0	NA	intron (NM_001278618, intron 1 of 8)	intron (NM_001278618, intron 1 of 8)	-34336	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
175329	chr4	68346721	68347250	+	0	NA	intron (NM_001031732, intron 1 of 16)	intron (NM_001031732, intron 1 of 16)	3105	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
20045	chr1	185420551	185421650	+	0	NA	Intergenic	Intergenic	-86061	NR_038424	100288079		NR_038424	ENSG00000293113	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo
93853	chr17	21002571	21002730	+	0	NA	3' UTR (NM_015276, exon 13 of 13)	3' UTR (NM_015276, exon 13 of 13)	40361	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
92333	chr17	8153301	8155100	+	0	NA	Intergenic	Intergenic	-1796	NM_002616	5187		NM_002616	ENSG00000179094	PER1	PER|RIGUI|hPER	period circadian regulator 1	protein-coding
130761	chr2	86820101	86820600	+	0	NA	intron (NM_001178100, intron 3 of 3)	Tigger1|DNA|TcMar-Tigger	-11954	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
71913	chr15	22774771	22775130	+	0	NA	intron (NM_001365371, intron 1 of 12)	intron (NM_001365371, intron 1 of 12)	1182	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
158372	chr22	50476451	50476750	+	0	NA	Intergenic	Intergenic	-1565	NM_001365819	6305		NM_002972	ENSG00000100241	SBF1	CMT4B3|DENND7A|MTMR5	SET binding factor 1	protein-coding
85278	chr16	48596251	48596930	+	0	NA	intron (NM_153029, intron 1 of 6)	LTR8|LTR|ERV1	13590	NM_153029	9683		NM_014664	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding
149503	chr21	32611351	32613700	+	0	NA	promoter-TSS (NM_001350334)	promoter-TSS (NM_001350334)	-148	NM_021254	56683		NM_017835	ENSG00000159079	CFAP298	C21orf48|C21orf59|CILD26|DNAAF16|FBB18|Kur	cilia and flagella associated protein 298	protein-coding
238706	chrX	154092401	154093000	+	0	NA	intron (NM_004992, intron 1 of 3)	intron (NM_004992, intron 1 of 3)	4269	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
205431	chr7	16779831	16779950	+	0	NA	intron (NM_014399, intron 5 of 5)	AluY|SINE|Alu	25109	NM_006408	10551		NM_006408	ENSG00000106541	AGR2	AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|RIFTD|XAG-2	anterior gradient 2, protein disulphide isomerase family member	protein-coding
210912	chr7	101212051	101212350	+	0	NA	intron (NM_001084, intron 10 of 18)	intron (NM_001084, intron 10 of 18)	5381	NM_001084	8985		NM_001084	ENSG00000106397	PLOD3	LH3	procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	protein-coding
162989	chr3	49717351	49718350	+	0	NA	3' UTR (NM_198722, exon 1 of 1)	3' UTR (NM_198722, exon 1 of 1)	1834	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
130490	chr2	85577151	85577910	+	0	NA	promoter-TSS (NM_003761)	promoter-TSS (NM_003761)	-56	NM_003761	8673		NM_003761	ENSG00000118640	VAMP8	EDB|VAMP-8	vesicle associated membrane protein 8	protein-coding
132516	chr2	106104501	106105650	+	0	NA	intron (NR_165308, intron 10 of 14)	intron (NR_165308, intron 10 of 14)	33806	NM_001253876	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
23164	chr1	226736111	226736700	+	0	NA	exon (NM_002221, exon 2 of 8)	exon (NM_002221, exon 2 of 8)	2770	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
156701	chr22	41685651	41686050	+	0	NA	intron (NM_005008, intron 1 of 3)	AluSz6|SINE|Alu	3017	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
12958	chr1	110879221	110880500	+	0	NA	intron (NM_001040033, intron 2 of 8)	AluJo|SINE|Alu	6712	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
219599	chr8	80028851	80028950	+	0	NA	intron (NM_014018, intron 1 of 2)	AluJb|SINE|Alu	1359	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
190153	chr5	178118721	178118980	+	0	NA	intron (NM_015111, intron 1 of 4)	intron (NM_015111, intron 1 of 4)	5318	NM_015111	23138		NM_015111	ENSG00000145911	N4BP3	LZTS4	NEDD4 binding protein 3	protein-coding
78710	chr15	98421501	98421900	+	0	NA	promoter-TSS (NR_146567)	promoter-TSS (NR_146567)	-702	NR_146567	105371011		NR_146566		LINC02351	-	long intergenic non-protein coding RNA 2351	ncRNA
54726	chr12	93590671	93590900	+	0	NA	Intergenic	AluSc5|SINE|Alu	18110	NM_001270471	8835		NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding
132831	chr2	110610671	110611430	+	0	NA	promoter-TSS (NM_001384362)	promoter-TSS (NM_001384362)	6	NM_001384362	729540		NM_001037866	ENSG00000183054	RGPD6	RGP6|RGPD7|RanBP2L1|RanBP2L2	RANBP2 like and GRIP domain containing 6	protein-coding
58180	chr12	124992451	124993200	+	0	NA	promoter-TSS (NM_080626)	promoter-TSS (NM_080626)	-820	NM_080626	140707		NM_080626	ENSG00000184992	BRI3BP	BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19	BRI3 binding protein	protein-coding
52944	chr12	57451571	57451730	+	0	NA	3' UTR (NM_005538, exon 2 of 2)	3' UTR (NM_005538, exon 2 of 2)	-3657	NM_031479	83729		NM_031479	ENSG00000139269	INHBE	-	inhibin subunit beta E	protein-coding
66430	chr14	61526701	61527150	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	43269	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
82696	chr16	20739351	20739650	+	0	NA	intron (NM_001304550, intron 1 of 4)	intron (NM_001304550, intron 1 of 4)	2318	NM_017736	55623		NM_017736	ENSG00000066654	THUMPD1	NEDSOA|Tan1	THUMP domain containing 1	protein-coding
36267	chr11	3790801	3791150	+	0	NA	intron (NR_157590, intron 1 of 31)	AluY|SINE|Alu	6571	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
113382	chr19	9009851	9010930	+	0	NA	Intergenic	Intergenic	-29048	NM_024690	94025		NM_024690	ENSG00000181143	MUC16	CA125	mucin 16, cell surface associated	protein-coding
232080	chr9	133538471	133538830	+	0	NA	intron (NM_014694, intron 4 of 18)	intron (NM_014694, intron 4 of 18)	3946	NM_014694	9719		NM_014694	ENSG00000197859	ADAMTSL2	ADAMTSL-2|GPHYSD1	ADAMTS like 2	protein-coding
85758	chr16	56860051	56861300	+	0	NA	Intergenic	Intergenic	2157	NR_029680	406930		NR_029680	ENSG00000207649	MIR138-2	MIRN138-2|mir-138-2	microRNA 138-2	ncRNA
180222	chr5	1525471	1525830	+	0	NA	Intergenic	Intergenic	-1690	NM_024830	79888		NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|LPLAT8|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
56625	chr12	118309621	118309880	+	0	NA	intron (NM_001346487, intron 1 of 20)	AluSq2|SINE|Alu	49955	NM_001346489	51347		NM_016281	ENSG00000135090	TAOK3	DPK|JIK|MAP3K18|hKFC-A	TAO kinase 3	protein-coding
141925	chr20	1200001	1200200	+	0	NA	Intergenic	MER66D|LTR|ERV1	-3354	NM_001009612								
129876	chr2	73102921	73103600	+	0	NA	intron (NM_001371272, intron 1 of 5)	intron (NM_001371272, intron 1 of 5)	9688	NM_001371272	26056		NM_015470	ENSG00000135631	RAB11FIP5	GAF1|RIP11|gaf-1|pp75|rab11-FIP5	RAB11 family interacting protein 5	protein-coding
128753	chr2	62195201	62197000	+	0	NA	promoter-TSS (NM_006577)	promoter-TSS (NM_006577)	-15	NM_006577	10678		NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
197969	chr6	89993501	89993700	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	99131	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
172421	chr4	1855151	1857200	+	0	NA	promoter-TSS (NM_012318)	promoter-TSS (NM_012318)	-19	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
29651	chr10	71877901	71878100	+	0	NA	Intergenic	Intergenic	-26749	NM_001042466	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
186386	chr5	135034301	135034730	+	0	NA	promoter-TSS (NM_002653)	promoter-TSS (NM_002653)	-287	NM_002653	5307		NM_002653	ENSG00000069011	PITX1	BFT|CCF|LBNBG|POTX|PTX1	paired like homeodomain 1	protein-coding
123115	chr19	51691921	51692380	+	0	NA	promoter-TSS (NR_029843)	promoter-TSS (NR_029843)	-462	NR_029843	407056		NR_029843	ENSG00000207550	MIR99B	MIRN99B|mir-99b	microRNA 99b	ncRNA
194916	chr6	34811151	34811550	+	0	NA	intron (NM_017754, intron 1 of 20)	L1M5|LINE|L1	19267	NM_017754	54887		NM_017754	ENSG00000065060	BLTP3A	C6orf107|ICBP90|SHIP164B|UHRF1BP1|dJ349A12.1	bridge-like lipid transfer protein family member 3A	protein-coding
132337	chr2	105568101	105568500	+	0	NA	Intergenic	Intergenic	42259	NR_038891	285000		NR_038891		LINC02946	RMEL1	long intergenic non-protein coding RNA 2946	ncRNA
202339	chr6	157538121	157538500	+	0	NA	intron (NM_024630, intron 1 of 8)	intron (NM_024630, intron 1 of 8)	9178	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
198056	chr6	90211221	90211730	+	0	NA	intron (NM_001170794, intron 1 of 6)	intron (NM_001170794, intron 1 of 6)	85368	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
137716	chr2	197558451	197558630	+	0	NA	Intergenic	AluJr|SINE|Alu	42242	NM_001204094	25843		NM_015387	ENSG00000115540	MOB4	2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3	MOB family member 4, phocein	protein-coding
118865	chr19	38654221	38654680	+	0	NA	intron (NM_004924, intron 1 of 20)	AluSx|SINE|Alu	6801	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
3576	chr1	16204121	16204380	+	0	NA	intron (NM_153213, intron 12 of 15)	intron (NM_153213, intron 12 of 15)	8402	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
204767	chr7	5604051	5604650	+	0	NA	intron (NM_003088, intron 4 of 4)	G-rich|Low_complexity|Low_complexity	11534	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
134769	chr2	147327401	147327850	+	0	NA	Intergenic	LTR33B|LTR|ERVL	-516892	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
62036	chr13	88623301	88623500	+	0	NA	Intergenic	Intergenic	-3453	NR_047490	100861553		NR_047490	ENSG00000261666	LINC00560	-	long intergenic non-protein coding RNA 560	ncRNA
47911	chr12	6763471	6763650	+	0	NA	Intergenic	Intergenic	-2803	NM_002824	5763		NM_002824	ENSG00000159335	PTMS	ParaT	parathymosin	protein-coding
110160	chr19	1645701	1646430	+	0	NA	intron (NM_003200, intron 3 of 18)	intron (NM_003200, intron 3 of 18)	6550	NM_003200	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
118601	chr19	36666301	36668130	+	0	NA	promoter-TSS (NM_001297623)	promoter-TSS (NM_001297623)	-378	NM_001322821	92283		NM_153257	ENSG00000197808	ZNF461	GIOT-1|GIOT1|HZF28	zinc finger protein 461	protein-coding
128654	chr2	61440921	61441500	+	0	NA	intron (NM_014709, intron 1 of 79)	AluJo|SINE|Alu	-23833	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
5428	chr1	25559351	25560830	+	0	NA	intron (NM_015627, intron 4 of 8)	intron (NM_015627, intron 4 of 8)	16484	NM_015627	26119		NM_015627	ENSG00000157978	LDLRAP1	ARH|ARH1|ARH2|FHCB1|FHCB2|FHCL4	low density lipoprotein receptor adaptor protein 1	protein-coding
107180	chr18	35579871	35580200	+	0	NA	promoter-TSS (NM_001384438)	promoter-TSS (NM_001384438)	-887	NM_001384438	2589		NM_020474	ENSG00000141429	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
67808	chr14	73775671	73776200	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	11273	NM_001043318	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
183450	chr5	79133501	79133980	+	0	NA	Intergenic	Intergenic	21931	NM_001713	635		NM_001713	ENSG00000145692	BHMT	BHMT1|HEL-S-61p	betaine--homocysteine S-methyltransferase	protein-coding
145804	chr20	45422351	45422450	+	0	NA	intron (NR_047691, intron 9 of 11)	intron (NR_047691, intron 9 of 11)	-3110	NR_106870	102465487		NR_106870	ENSG00000273555	MIR6812	hsa-mir-6812	microRNA 6812	ncRNA
210666	chr7	100517221	100517880	+	0	NA	Intergenic	MER81|DNA|hAT-Blackjack	-21653	NM_006076	3268		NM_006076	ENSG00000106351	AGFG2	HRBL|RABR	ArfGAP with FG repeats 2	protein-coding
207686	chr7	45252021	45252150	+	0	NA	Intergenic	Intergenic	94294	NM_005856	10268		NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
160492	chr3	30618571	30619430	+	0	NA	intron (NM_003242, intron 1 of 6)	intron (NM_003242, intron 1 of 6)	12399	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
211563	chr7	105619071	105619230	+	0	NA	intron (NM_001385596, intron 9 of 11)	AluSx|SINE|Alu	-37608	NM_001355527	100130771		NM_001355526	ENSG00000185055	EFCAB10	-	EF-hand calcium binding domain 10	protein-coding
232201	chr9	134329221	134329680	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	2995	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
225523	chr9	35736071	35736930	+	0	NA	TTS (NM_020944)	TTS (NM_020944)	3578	NR_106912	102466201		NR_106912	ENSG00000273945	MIR6853	hsa-mir-6853	microRNA 6853	ncRNA
98553	chr17	47689001	47689200	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6164	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
81494	chr16	8948771	8949130	+	0	NA	intron (NM_003470, intron 1 of 30)	AluJr|SINE|Alu	704	NR_135826	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
144090	chr20	33734371	33734530	+	0	NA	intron (NM_001282933, intron 1 of 14)	L2|LINE|L2	2454	NM_001282933	84905		NM_032819	ENSG00000131061	ZNF341	HIES3	zinc finger protein 341	protein-coding
128904	chr2	64203271	64203430	+	0	NA	non-coding (NR_033837, exon 1 of 6)	non-coding (NR_033837, exon 1 of 6)	2135	NR_033837	150992		NR_033837	ENSG00000230923	LINC00309	NCRNA00309	long intergenic non-protein coding RNA 309	ncRNA
114011	chr19	10870551	10873950	+	0	NA	promoter-TSS (NM_001370089)	promoter-TSS (NM_001370089)	-179	NM_001370089	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
154091	chr22	30946651	30946950	+	0	NA	intron (NM_014941, intron 6 of 26)	intron (NM_014941, intron 6 of 26)	21487	NM_001303257	22880		NM_014941	ENSG00000133422	MORC2	CMT2Z|DIGFAN|ZCW3|ZCWCC1	MORC family CW-type zinc finger 2	protein-coding
226358	chr9	69877921	69878180	+	0	NA	intron (NM_001308084, intron 4 of 4)	intron (NM_001308084, intron 4 of 4)	57233	NR_131756	138255		NM_001010940	ENSG00000204711	CFAP95	C9orf135	cilia and flagella associated protein 95	protein-coding
118951	chr19	38836651	38836750	+	0	NA	3' UTR (NM_001005335, exon 13 of 13).2	3' UTR (NM_001005335, exon 13 of 13).2	-4906	NM_001398	1891		NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding
204510	chr7	4789601	4790250	+	0	NA	exon (NM_001364858, exon 13 of 16)	exon (NM_001364858, exon 13 of 16)	-1286	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
67101	chr14	68343851	68343950	+	0	NA	intron (NM_133509, intron 8 of 10)	MSTB-int|LTR|ERVL-MaLR	284887	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
163285	chr3	50322701	50322900	+	0	NA	promoter-TSS (NM_033158)	promoter-TSS (NM_033158)	50	NM_033158	8692		NM_003773	ENSG00000068001	HYAL2	LUCA2	hyaluronidase 2	protein-coding
12241	chr1	100429271	100429430	+	0	NA	intron (NM_001319210, intron 5 of 16)	intron (NM_001319210, intron 5 of 16)	76844	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
220443	chr8	100313251	100314030	+	0	NA	intron (NM_001280539, intron 1 of 10)	L2b|LINE|L2	-3687	NM_183419	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
74344	chr15	58606371	58606730	+	0	NA	intron (NM_001320570, intron 13 of 14)	intron (NM_001320570, intron 13 of 14)	87057	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
41462	chr11	66117781	66118480	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	47858	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
139486	chr2	224518201	224518400	+	0	NA	intron (NM_003590, intron 3 of 15)	L1MB7|LINE|L1	51655	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
187095	chr5	140341921	140343430	+	0	NA	exon (NM_001945, exon 3 of 6)	exon (NM_001945, exon 3 of 6)	3928	NM_001945	1839		NM_001945	ENSG00000113070	HBEGF	DTR|DTS|DTSF|HEGFL	heparin binding EGF like growth factor	protein-coding
216038	chr8	9614971	9615130	+	0	NA	intron (NM_003747, intron 2 of 26)	intron (NM_003747, intron 2 of 26)	59138	NM_003747	8658		NM_003747	ENSG00000173273	TNKS	ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5	tankyrase	protein-coding
205396	chr7	16346321	16346980	+	0	NA	intron (NM_001101417, intron 2 of 8)	intron (NM_001101417, intron 2 of 8)	74888	NM_001101417	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
210698	chr7	100576671	100577000	+	0	NA	intron (NM_001289934, intron 13 of 17)	intron (NM_001289934, intron 13 of 17)	-1616	NM_001289933								
213983	chr7	142807321	142810030	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	37705	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
49879	chr12	38904601	38906090	+	0	NA	intron (NM_153634, intron 1 of 19)	intron (NM_153634, intron 1 of 19)	246	NM_153634	144402		NM_153634	ENSG00000139117	CPNE8	-	copine 8	protein-coding
89007	chr16	87983201	87983900	+	0	NA	intron (NM_001173543, intron 3 of 13)	intron (NM_001173543, intron 3 of 13)	6397	NM_001384940	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
226671	chr9	75024971	75025850	+	0	NA	intron (NM_152420, intron 1 of 7)	Tigger2b_Pri|DNA|TcMar-Tigger	1741	NM_001320497	138199		NM_152420	ENSG00000156017	CARNMT1	C9orf41|UPF0586	carnosine N-methyltransferase 1	protein-coding
56272	chr12	112106471	112106800	+	0	NA	intron (NM_024953, intron 1 of 23)	intron (NM_024953, intron 1 of 23)	2148	NM_024953	80018		NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N-alpha-acetyltransferase 25, NatB auxiliary subunit	protein-coding
111637	chr19	4172601	4173600	+	0	NA	TTS (NM_001271997)	TTS (NM_001271997)	9206	NM_001321064	51548		NM_016539	ENSG00000077463	SIRT6	SIR2L6|hSIRT6	sirtuin 6	protein-coding
213212	chr7	132906351	132906850	+	0	NA	intron (NM_001317177, intron 4 of 8)	intron (NM_001317177, intron 4 of 8)	128315	NR_037427	100500804		NR_037427	ENSG00000284135	MIR3654	-	microRNA 3654	ncRNA
193035	chr6	28479051	28479350	+	0	NA	Intergenic	Intergenic	-35709	NM_001012455	222696		NM_001012455	ENSG00000187987	ZSCAN23	ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1	zinc finger and SCAN domain containing 23	protein-coding
34195	chr10	128583521	128583600	+	0	NA	Intergenic	(TCTA)n|Simple_repeat|Simple_repeat	297610	NR_120619	101927381		NR_120619	ENSG00000280953	LINC01163	TCONS_00017722	long intergenic non-protein coding RNA 1163	ncRNA
181409	chr5	40697501	40698900	+	0	NA	Intergenic	AluJr4|SINE|Alu	18285	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
214300	chr7	149145621	149145980	+	0	NA	intron (NM_020781, intron 2 of 6)	LTR26D|LTR|ERV1	-1653	NM_170686	57541		NM_020781	ENSG00000197024	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding
19963	chr1	184895071	184895900	+	0	NA	intron (NM_052966, intron 2 of 13)	intron (NM_052966, intron 2 of 13)	79023	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
27908	chr10	41894651	41894950	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	473245	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
88941	chr16	87837051	87837450	+	0	NA	intron (NM_003486, intron 7 of 9)	intron (NM_003486, intron 7 of 9)	-2590	NR_106833	102465464		NR_106833	ENSG00000278598	MIR6775	hsa-mir-6775	microRNA 6775	ncRNA
216974	chr8	23066171	23066330	+	0	NA	intron (NM_147187, intron 1 of 9)	AluJb|SINE|Alu	-1979	NR_038873	286059		NR_038873	ENSG00000246130	TNFRSF10B-AS1	DR5-AS	TNFRSF10B antisense RNA 1	pseudo
167748	chr3	132180301	132180580	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	-136967	NM_001099	55		NM_001099	ENSG00000014257	ACP3	5'-NT|ACP-3|ACPP|TM-PAP	acid phosphatase 3	protein-coding
69589	chr14	97276451	97276880	+	0	NA	Intergenic	Intergenic	121808	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
40787	chr11	64887421	64889530	+	0	NA	TTS (NR_133639)	TTS (NR_133639)	2771	NR_029578	406967		NR_029578	ENSG00000283926	MIR192	MIRN192|miR-192|miRNA192	microRNA 192	ncRNA
30719	chr10	81875201	81875600	+	0	NA	promoter-TSS (NM_001165972)	promoter-TSS (NM_001165972)	86	NM_001165972	10718		NM_001010848	ENSG00000185737	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding
92215	chr17	7862421	7863230	+	0	NA	TTS (NM_001330110)	TTS (NM_001330110)	4822	NM_001330110	124637		NM_144607	ENSG00000182224	CYB5D1	-	cytochrome b5 domain containing 1	protein-coding
205368	chr7	13981171	13981330	+	0	NA	intron (NM_001370556, intron 3 of 11)	intron (NM_001370556, intron 3 of 11)	5264	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
95573	chr17	36941651	36942330	+	0	NA	intron (NM_005568, intron 3 of 4)	CpG-11024	4515	NM_005568	3975		NM_005568	ENSG00000273706	LHX1	LIM-1|LIM1	LIM homeobox 1	protein-coding
4889	chr1	23794301	23794900	+	0	NA	TTS (NM_001008216)	TTS (NM_001008216)	3455	NM_007260	11313		NM_007260	ENSG00000011009	LYPLA2	APT-2|APT2|DJ886K2.4	lysophospholipase 2	protein-coding
34408	chr10	132394671	132395350	+	0	NA	Intergenic	Intergenic	-2190	NM_138499	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
166158	chr3	111595201	111595750	+	0	NA	promoter-TSS (NM_024508)	promoter-TSS (NM_024508)	-129	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
137133	chr2	191029351	191029900	+	0	NA	TTS (NM_001243835)	TTS (NM_001243835)	8099	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
34160	chr10	128070971	128071130	+	0	NA	intron (NM_001323354, intron 14 of 19)	intron (NM_001323354, intron 14 of 19)	-8625	NR_136149	105378553		NR_136149		AS-PTPRE	-	lncRNA antisense to PTPRE protein-coding gene	ncRNA
104534	chr17	81251321	81252380	+	0	NA	intron (NM_001037984, intron 13 of 15)	intron (NM_001037984, intron 13 of 15)	11936	NR_148426	284184		NM_001086521	ENSG00000224877	NDUFAF8	C17orf89|MC1DN34	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding
63091	chr13	113215671	113215830	+	0	NA	intron (NM_003589, intron 2 of 19)	CpG	6137	NM_001008895	8451		NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
169645	chr3	171445751	171446050	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	14505	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
54203	chr12	79886901	79887450	+	0	NA	intron (NM_001143885, intron 2 of 25)	intron (NM_001143885, intron 2 of 25)	26736	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
147072	chr20	53750901	53752230	+	0	NA	Intergenic	Intergenic	124144	NR_002189	391257		NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo
75210	chr15	64838571	64838900	+	0	NA	Intergenic	Intergenic	-3148	NM_001195059	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
35420	chr11	1428901	1429450	+	0	NA	intron (NM_001256630, intron 1 of 19)	(GT)n|Simple_repeat|Simple_repeat	18023	NM_001256630	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
168473	chr3	143164671	143165150	+	0	NA	Intergenic	Intergenic	45139	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
134835	chr2	148643671	148644800	+	0	NA	promoter-TSS (NM_015630)	promoter-TSS (NM_015630)	-516	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
118739	chr19	38313451	38314180	+	0	NA	intron (NM_001145463, intron 1 of 8)	L2c|LINE|L2	1965	NM_001145461	90522		NM_033557	ENSG00000167645	YIF1B	FinGER8|KABAMAS	Yip1 interacting factor homolog B, membrane trafficking protein	protein-coding
80595	chr16	2913421	2914030	+	0	NA	intron (NM_032296, intron 1 of 9)	intron (NM_032296, intron 1 of 9)	1746	NM_020912	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
88778	chr16	87295301	87295630	+	0	NA	Intergenic	Intergenic	-3013	NR_104667	101928682		NR_104667	ENSG00000261697	LOC101928682	-	uncharacterized LOC101928682	ncRNA
58833	chr12	132851671	132851830	+	0	NA	intron (NM_018223, intron 11 of 17)	intron (NM_018223, intron 11 of 17)	-22881	NM_001172557	2802		NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding
192802	chr6	26594651	26595000	+	0	NA	Intergenic	Intergenic	-2128	NM_013375	29777		NM_013375	ENSG00000146109	ABT1	Esf2|hABT1	activator of basal transcription 1	protein-coding
43154	chr11	75337501	75337780	+	0	NA	intron (NM_020251, intron 1 of 14)	L2c|LINE|L2	-2454	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
200335	chr6	133952601	133955150	+	0	NA	intron (NM_004865, intron 1 of 6)	intron (NM_004865, intron 1 of 6)	651	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
180197	chr5	1496801	1497000	+	0	NA	intron (NM_024830, intron 2 of 13)	intron (NM_024830, intron 2 of 13)	13956	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA
202033	chr6	152987971	152988680	+	0	NA	non-coding (NR_126056, exon 6 of 6)	non-coding (NR_126056, exon 6 of 6)	-4746	NM_001142522	26271		NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding
16304	chr1	154175001	154175450	+	0	NA	intron (NM_001278188, intron 1 of 6)	AluY|SINE|Alu	2979	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
83631	chr16	28281471	28282030	+	0	NA	Intergenic	MIR|SINE|MIR	-10775	NM_001024401	388228		NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding
80560	chr16	2840871	2841400	+	0	NA	non-coding (NR_026864, exon 1 of 2)	non-coding (NR_026864, exon 1 of 2)	1616	NR_026864	124221		NM_178453	ENSG00000291300	PRSS30P	Disp|TMPRSS8|TMPRSS8P	serine protease 30, pseudogene	pseudo
223781	chr8	144580371	144581800	+	0	NA	exon (NM_001308208, exon 3 of 11)	exon (NM_001308208, exon 3 of 11)	24610	NM_025251	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
2169	chr1	8461421	8461680	+	0	NA	intron (NM_012102, intron 12 of 23)	intron (NM_012102, intron 12 of 23)	33363	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
156734	chr22	41805571	41805980	+	0	NA	intron (NM_001382346, intron 2 of 7)	AluJo|SINE|Alu	5096	NM_001304797	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
138418	chr2	205197821	205198080	+	0	NA	intron (NM_205863, intron 15 of 21)	intron (NM_205863, intron 15 of 21)	-484550	NM_201264	8828		NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
81382	chr16	5071571	5073150	+	0	NA	intron (NM_001330504, intron 1 of 12)	intron (NM_001330504, intron 1 of 12)	112	NM_001330504	56052		NM_019109	ENSG00000033011	ALG1	CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1	ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase	protein-coding
131615	chr2	96924071	96925350	+	0	NA	non-coding (NR_110209, exon 3 of 3)	non-coding (NR_110209, exon 3 of 3)	5604	NR_110209	101927053		NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
39724	chr11	61775951	61776900	+	0	NA	exon (NM_001127392, exon 10 of 27)	exon (NM_001127392, exon 10 of 27)	16136	NR_030342	693196		NR_030342	ENSG00000284108	MIR611	MIRN611|hsa-mir-611	microRNA 611	ncRNA
5358	chr1	25337401	25339930	+	0	NA	promoter-TSS (NR_135788)	promoter-TSS (NR_135788)	331	NM_014313	23585		NM_014313	ENSG00000183726	TMEM50A	IFNRC|SMP1	transmembrane protein 50A	protein-coding
192155	chr6	17280721	17281000	+	0	NA	promoter-TSS (NM_001143942)	promoter-TSS (NM_001143942)	-501	NM_001143942	221662		NM_153020	ENSG00000112183	RBM24	RNPC6|dJ259A10.1	RNA binding motif protein 24	protein-coding
132804	chr2	110394871	110395030	+	0	NA	Intergenic	Intergenic	-10414	NR_027244	151009		NM_152518		LINC01106	-	long intergenic non-protein coding RNA 1106	ncRNA
90866	chr17	2373471	2373830	+	0	NA	intron (NM_001346700, intron 16 of 22)	MIRc|SINE|MIR	27410	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
81518	chr16	9047851	9048100	+	0	NA	Intergenic	Intergenic	-43669	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
6746	chr1	30721151	30721450	+	0	NA	non-coding (NR_034182, exon 2 of 4)	non-coding (NR_034182, exon 2 of 4)	2285	NM_002379	4146		NM_002379	ENSG00000162510	MATN1	CMP|CRTM	matrilin 1	protein-coding
92303	chr17	8116301	8116980	+	0	NA	intron (NM_021628, intron 3 of 15)	intron (NM_021628, intron 3 of 15)	1663	NM_001369446	59344		NM_021628	ENSG00000179148	ALOXE3	ARCI3|E-LOX|LI5|eLOX-3|eLOX3	arachidonate lipoxygenase 3	protein-coding
175029	chr4	52711921	52713550	+	0	NA	promoter-TSS (NR_039651)	promoter-TSS (NR_039651)	53	NR_039651	100616436		NR_039651	ENSG00000264585	MIR4449	mir-4449	microRNA 4449	ncRNA
212285	chr7	123746821	123747880	+	0	NA	intron (NM_003941, intron 1 of 10)	intron (NM_003941, intron 1 of 10)	1653	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
220476	chr8	100450601	100451030	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	68052	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
158072	chr22	49961601	49963190	+	0	NA	promoter-TSS (NR_106879)	promoter-TSS (NR_106879)	-471	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA
72915	chr15	40367321	40368830	+	0	NA	exon (NM_033510, exon 8 of 8)	exon (NM_033510, exon 8 of 8)	9856	NM_033510	85455		NM_033510	ENSG00000140323	DISP2	C15orf36|DISPB|HsT16908|LINC00594	dispatched RND transporter family member 2	protein-coding
13172	chr1	112358801	112359100	+	0	NA	Intergenic	Intergenic	-37264	NM_018704	55917		NM_018704	ENSG00000143079	CTTNBP2NL	-	CTTNBP2 N-terminal like	protein-coding
74478	chr15	59917601	59918030	+	0	NA	Intergenic	Intergenic	-86496	NM_012182	27023		NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding
91335	chr17	4436321	4436980	+	0	NA	intron (NM_001320449, intron 1 of 10)	intron (NM_001320449, intron 1 of 10)	2710	NM_182538	201305		NM_182538	ENSG00000182557	SPNS3	SLC62A3|SLC63A3	SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)	protein-coding
46951	chr11	134414521	134414780	+	0	NA	Intergenic	Intergenic	-2408	NM_001367973	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
154436	chr22	35349951	35350050	+	0	NA	Intergenic	Intergenic	-13201	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
205404	chr7	16400651	16401130	+	0	NA	intron (NR_160656, intron 2 of 7)	MER21C|LTR|ERVL	20648	NM_001101417	729920		NM_001101417	ENSG00000214960	CRPPA	ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD	CDP-L-ribitol pyrophosphorylase A	protein-coding
131488	chr2	96522951	96523250	+	0	NA	Intergenic	Intergenic	9206	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
146185	chr20	48757851	48758950	+	0	NA	intron (NM_020820, intron 1 of 39)	LTR16C|LTR|ERVL	69599	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
138685	chr2	213070651	213070950	+	0	NA	intron (NM_001371277, intron 3 of 6)	intron (NM_001371277, intron 3 of 6)	79637	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
208715	chr7	73308271	73309480	+	0	NA	promoter-TSS (NM_001168347)	promoter-TSS (NM_001168347)	-8	NM_001168348	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
230886	chr9	129206171	129206330	+	0	NA	Intergenic	Intergenic	-27989	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
54315	chr12	89521101	89521600	+	0	NA	3' UTR (NM_001199782, exon 3 of 3)	3' UTR (NM_001199782, exon 3 of 3)	3446	NM_003774	8693		NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
129843	chr2	72893621	72894030	+	0	NA	Intergenic	Intergenic	6417	NM_003124	6697		NM_003124	ENSG00000116096	SPR	SDR38C1	sepiapterin reductase	protein-coding
58071	chr12	124548901	124549100	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	18612	NM_001077261	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
154897	chr22	37163701	37165130	+	0	NA	intron (NM_001346222, intron 1 of 9)	intron (NM_001346222, intron 1 of 9)	10641	NM_001346223	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
31530	chr10	96845371	96845900	+	0	NA	intron (NM_032440, intron 2 of 7)	AluYe5|SINE|Alu	12690	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
114817	chr19	13810151	13810450	+	0	NA	intron (NM_023072, intron 5 of 12)	AluSg|SINE|Alu	14857	NM_023072	65249		NM_023072	ENSG00000132003	ZSWIM4	-	zinc finger SWIM-type containing 4	protein-coding
47623	chr12	6140921	6141380	+	0	NA	Intergenic	Intergenic	-16480	NM_000552	7450		NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding
121878	chr19	48327521	48328130	+	0	NA	intron (NM_001313905, intron 3 of 4)	AluSq|SINE|Alu	1826	NM_001313905	2014		NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3 (MAM blood group)	protein-coding
183344	chr5	76773851	76774950	+	0	NA	Intergenic	Intergenic	-44630	NM_005242	2150		NM_005242	ENSG00000164251	F2RL1	GPR11|PAR2	F2R like trypsin receptor 1	protein-coding
19345	chr1	173844421	173845080	+	0	NA	intron (NM_018122, intron 11 of 16)	intron (NM_018122, intron 11 of 16)	-18498	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
95910	chr17	38905121	38905650	+	0	NA	intron (NM_006148, intron 4 of 6)	AluSc8|SINE|Alu	-9594	NR_106837	102465467		NR_106837	ENSG00000277057	MIR6779	hsa-mir-6779	microRNA 6779	ncRNA
156633	chr22	41606971	41607330	+	0	NA	intron (NM_015704, intron 3 of 5)	intron (NM_015704, intron 3 of 5)	13893	NM_015704	27351		NM_015704	ENSG00000100418	DESI1	D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|POST|PPPDE2	desumoylating isopeptidase 1	protein-coding
12197	chr1	100381951	100383480	+	0	NA	intron (NM_001319210, intron 3 of 16)	intron (NM_001319210, intron 3 of 16)	30209	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
20862	chr1	201984321	201985650	+	0	NA	intron (NM_001319182, intron 1 of 10)	AluSx|SINE|Alu	1624	NM_001319182	6051		NM_020216	ENSG00000176393	RNPEP	AP-B|APB	arginyl aminopeptidase	protein-coding
44353	chr11	102443801	102444000	+	0	NA	intron (NM_052932, intron 2 of 4)	L1PA6|LINE|L1	8865	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
49746	chr12	31730251	31730350	+	0	NA	Intergenic	MER65D|LTR|ERV1	-1126	NR_103523	196394		NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
201785	chr6	149974501	149975130	+	0	NA	Intergenic	L1M4|LINE|L1	10872	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
102505	chr17	75771201	75772930	+	0	NA	Intergenic	Intergenic	-6873	NM_000154	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
66679	chr14	63940151	63941100	+	0	NA	exon (NM_182914, exon 3 of 116)	exon (NM_182914, exon 3 of 116)	87621	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
203153	chr6	167000851	167001550	+	0	NA	intron (NM_194429, intron 2 of 11)	intron (NM_194429, intron 2 of 11)	1803	NM_194429	11116		NM_007045	ENSG00000213066	CEP43	FGFR1OP|FOP	centrosomal protein 43	protein-coding
110319	chr19	1853271	1854420	+	0	NA	3' UTR (NM_031918, exon 2 of 2)	3' UTR (NM_031918, exon 2 of 2)	-5362	NM_020695	57455		NM_020695	ENSG00000079313	REXO1	ELOABP1|EloA-BP1|REX1|TCEB3BP1	RNA exonuclease 1 homolog	protein-coding
150399	chr21	42308071	42308430	+	0	NA	Intergenic	Intergenic	7159	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
104386	chr17	81032721	81033700	+	0	NA	non-coding (NR_026857, exon 2 of 2)	non-coding (NR_026857, exon 2 of 2)	1509	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
145337	chr20	41126901	41127550	+	0	NA	intron (NR_109889, intron 4 of 6)	Kanga2_a|DNA|TcMar-Tc2	-10318	NM_002660	5335		NM_002660	ENSG00000124181	PLCG1	IDAA|NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1	phospholipase C gamma 1	protein-coding
79422	chr16	693421	694390	+	0	NA	3' UTR (NM_153350, exon 6 of 6)	3' UTR (NM_153350, exon 6 of 6)	-3507	NM_032259	84219		NM_032259	ENSG00000127580	WDR24	C16orf21|JFP7	WD repeat domain 24	protein-coding
60962	chr13	46591621	46591880	+	0	NA	intron (NM_015116, intron 1 of 18)	intron (NM_015116, intron 1 of 18)	38580	NM_001164213	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
30551	chr10	79704221	79705350	+	0	NA	intron (NM_001278495, intron 1 of 6)	intron (NM_001278495, intron 1 of 6)	1558	NM_001278495	729262		NM_001278495	ENSG00000188199	NUTM2B	FAM22B|bA119F19.1	NUT family member 2B	protein-coding
168446	chr3	142929251	142929390	+	0	NA	intron (NR_038455, intron 1 of 4)	intron (NR_038455, intron 1 of 4)	2645	NR_038455	100507389		NR_038455	ENSG00000243818	HLMR1	-	hepatic lncRNA metabolic regulator 1	ncRNA
227987	chr9	95481001	95481200	+	0	NA	TTS (NM_001354919)	TTS (NM_001354919)	17491	NR_038982	100507346		NR_038982		LOC100507346	-	uncharacterized LOC100507346	ncRNA
237064	chrX	103509451	103509550	+	0	NA	intron (NM_080879, intron 2 of 2)	(CTCTC)n|Simple_repeat|Simple_repeat	9989	NM_080879	142684		NM_080879	ENSG00000172476	RAB40A	RAR2|RAR2A	RAB40A, member RAS oncogene family	protein-coding
99311	chr17	49820001	49820300	+	0	NA	intron (NM_001199155, intron 8 of 13)	AluJr|SINE|Alu	-25736	NR_164135	729220		NR_164135		FLJ45513	-	uncharacterized LOC729220	ncRNA
53503	chr12	66393721	66394180	+	0	NA	intron (NM_001379345, intron 17 of 24)	MIRc|SINE|MIR	91405	NR_135080	92797		NM_033647	ENSG00000127311	HELB	DHB|hDHB	DNA helicase B	protein-coding
117600	chr19	21865621	21865880	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-13682	NM_001256653	7594		NM_003423	ENSG00000198521	ZNF43	HTF6|KOX27|ZNF39L1	zinc finger protein 43	protein-coding
108181	chr18	63050751	63051450	+	0	NA	Intergenic	Intergenic	268669	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
122182	chr19	48919871	48920230	+	0	NA	intron (NM_006184, intron 10 of 12)	AluSz6|SINE|Alu	-1159	NR_046633	100874085		NR_046633	ENSG00000235191	NUCB1-AS1	-	NUCB1 antisense RNA 1	ncRNA
56887	chr12	120304921	120305180	+	0	NA	intron (NM_012240, intron 2 of 3)	AluSx|SINE|Alu	2729	NM_012240	23409		NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding
39212	chr11	57546051	57546550	+	0	NA	exon (NM_001105565, exon 6 of 8)	exon (NM_001105565, exon 6 of 8)	8705	NM_001105565	219537		NM_001105565	ENSG00000214872	SMTNL1	CHASM	smoothelin like 1	protein-coding
159885	chr3	16886211	16886880	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	1590	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
217106	chr8	24941451	24942460	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	11912	NR_106900	102465506		NR_106900	ENSG00000283327	MIR6841	hsa-mir-6841	microRNA 6841	ncRNA
43067	chr11	74570351	74570750	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-22032	NR_046409	10714		NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
55051	chr12	96425451	96425780	+	0	NA	Intergenic	Intergenic	-25176	NM_001170464	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
51059	chr12	49825201	49825550	+	0	NA	intron (NM_001368048, intron 1 of 13)	intron (NM_001368048, intron 1 of 13)	3038	NM_001368048	57701		NM_001037806	ENSG00000167566	NCKAP5L	Cep169|FP1193|KIAA1602	NCK associated protein 5 like	protein-coding
110013	chr19	1436051	1436150	+	0	NA	TTS (NM_001352034)	TTS (NM_001352034)	-2296	NM_001018	6209		NM_001018	ENSG00000115268	RPS15	RIG|S15|uS19	ribosomal protein S15	protein-coding
150093	chr21	37427001	37427200	+	0	NA	intron (NM_101395, intron 3 of 12)	L1M8|LINE|L1	6801	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
9238	chr1	46036701	46037400	+	0	NA	TTS (NM_015112)	TTS (NM_015112)	93623	NM_001328651	8503		NM_003629	ENSG00000117461	PIK3R3	p55|p55-GAMMA|p55PIK	phosphoinositide-3-kinase regulatory subunit 3	protein-coding
68245	chr14	76977321	76978580	+	0	NA	Intergenic	(CCT)n|Simple_repeat|Simple_repeat	18312	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
152395	chr22	20545551	20546300	+	0	NA	intron (NM_001003891, intron 2 of 17)	intron (NM_001003891, intron 2 of 17)	37878	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
117950	chr19	33240501	33240700	+	0	NA	Intergenic	Intergenic	-14750	NM_019849	56301		NM_019849	ENSG00000130876	SLC7A10	ASC1|HASC-1|asc-1	solute carrier family 7 member 10	protein-coding
112315	chr19	5895251	5895550	+	0	NA	intron (NM_175614, intron 3 of 3)	intron (NM_175614, intron 3 of 3)	8390	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
6275	chr1	27594951	27596330	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	7854	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
21204	chr1	204073121	204074930	+	0	NA	intron (NM_005686, intron 1 of 13)	CpG	910	NM_005686	9580		NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box transcription factor 13	protein-coding
100509	chr17	62062271	62062680	+	0	NA	intron (NM_005121, intron 2 of 29)	intron (NM_005121, intron 2 of 29)	2803	NM_005121	9969		NM_005121	ENSG00000108510	MED13	ARC250|DRIP250|HSPC221|MRD61|THRAP1|TRAP240	mediator complex subunit 13	protein-coding
230507	chr9	128271251	128271550	+	0	NA	intron (NM_004486, intron 2 of 25)	intron (NM_004486, intron 2 of 25)	-3956	NM_001379267	375757		NM_001040011	ENSG00000175854	SWI5	C9orf119|SAE3	SWI5 homologous recombination repair protein	protein-coding
101111	chr17	65015221	65015680	+	0	NA	intron (NM_001282425, intron 3 of 3)	AluY|SINE|Alu	-39865	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
224441	chr9	15354821	15355150	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-47625	NM_152574	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
189630	chr5	176038351	176038650	+	0	NA	Intergenic	L1M2|LINE|L1	23555	NR_103794	100996385		NR_103794	ENSG00000248469	LOC100996385	-	uncharacterized LOC100996385	ncRNA
164028	chr3	53253301	53253530	+	0	NA	intron (NM_001064, intron 1 of 13)	AluJo|SINE|Alu	2607	NM_001064	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
196321	chr6	43092551	43093050	+	0	NA	intron (NM_001270398, intron 1 of 19)	intron (NM_001270398, intron 1 of 19)	15986	NM_001270398	5754		NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding
162983	chr3	49712301	49713230	+	0	NA	non-coding (NR_135218, exon 27 of 39)	non-coding (NR_135218, exon 27 of 39)	6919	NM_198722	386724		NM_198722	ENSG00000176020	AMIGO3	ALI3|AMIGO-3	adhesion molecule with Ig like domain 3	protein-coding
102164	chr17	75129851	75130150	+	0	NA	TTS (NM_001252377)	TTS (NM_001252377)	1742	NR_045513	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
64062	chr14	22550971	22551390	+	0	NA	Intergenic	Intergenic	5882	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
67720	chr14	73474601	73475400	+	0	NA	Intergenic	AluSz6|SINE|Alu	-11358	NR_135251	101928143		NR_135251	ENSG00000284930	LOC101928143	-	uncharacterized LOC101928143	ncRNA
176558	chr4	98597751	98598230	+	0	NA	intron (NM_005723, intron 1 of 7)	L1HS|LINE|L1	60621	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
84151	chr16	29744751	29744880	+	0	NA	exon (NM_175900, exon 2 of 2)	exon (NM_175900, exon 2 of 2)	1175	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
190159	chr5	178127421	178127830	+	0	NA	Intergenic	Intergenic	-3336	NM_001288795	64777		NM_022762	ENSG00000145916	RMND5B	GID2|GID2B	required for meiotic nuclear division 5 homolog B	protein-coding
162212	chr3	47022071	47022550	+	0	NA	intron (NR_146158, intron 19 of 21)	AluJb|SINE|Alu	10768	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
219593	chr8	79982771	79982930	+	0	NA	intron (NM_014018, intron 2 of 2)	L1PA3|LINE|L1	47409	NM_014018	28957		NM_014018	ENSG00000147586	MRPS28	COXPD47|HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding
216790	chr8	22532851	22532950	+	0	NA	intron (NM_005605, intron 11 of 13)	intron (NM_005605, intron 11 of 13)	-19027	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
48190	chr12	8031921	8034250	+	0	NA	5' UTR (NM_018416, exon 1 of 11)	5' UTR (NM_018416, exon 1 of 11)	369	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
205172	chr7	7541351	7541750	+	0	NA	Intergenic	Intergenic	-5677	NM_001037763	340267		NM_001037763	ENSG00000215018	COL28A1	COL28	collagen type XXVIII alpha 1 chain	protein-coding
3486	chr1	16014801	16015200	+	0	NA	3' UTR (NM_001349685, exon 3 of 3)	3' UTR (NM_001349685, exon 3 of 3)	3043	NM_001349685	27129		NM_014424	ENSG00000173641	HSPB7	cvHSP	heat shock protein family B (small) member 7	protein-coding
3361	chr1	15601621	15602250	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-15523	NM_032341	84301		NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding
44634	chr11	109984871	109985050	+	0	NA	Intergenic	Intergenic	-108432	NM_033390	85463		NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding
204216	chr7	2524971	2525600	+	0	NA	exon (NM_001040167, exon 3 of 8)	exon (NM_001040167, exon 3 of 8)	-1789	NR_039791	100616116		NR_039791	ENSG00000264357	MIR4648	-	microRNA 4648	ncRNA
84858	chr16	31141621	31143500	+	0	NA	exon (NM_001258291, exon 10 of 14)	exon (NM_001258291, exon 10 of 14)	-6833	NM_002773	5652		NM_002773	ENSG00000052344	PRSS8	CAP1|PROSTASIN	serine protease 8	protein-coding
186534	chr5	138441721	138441980	+	0	NA	intron (NM_016606, intron 3 of 7)	AluSz|SINE|Alu	2793	NR_073449	51308		NM_016606	ENSG00000132563	REEP2	C5orf19|SGC32445|SPG72|SPG72A|SPG72B|Yip2d	receptor accessory protein 2	protein-coding
143258	chr20	25077571	25077950	+	0	NA	TTS (NM_199425)	TTS (NM_199425)	292	NR_165183	30813		NM_014588	ENSG00000100987	VSX1	CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX	visual system homeobox 1	protein-coding
82074	chr16	14145051	14145150	+	0	NA	intron (NM_014048, intron 3 of 16)	intron (NM_014048, intron 3 of 16)	-41586	NM_001365414	57496		NM_014048	ENSG00000186260	MRTFB	MKL2|MRTF-B|NPD001	myocardin related transcription factor B	protein-coding
210289	chr7	99428901	99429330	+	0	NA	exon (NM_001198879, exon 6 of 9)	exon (NM_001198879, exon 6 of 9)	9683	NM_015545	26024		NM_015545	ENSG00000106246	PTCD1	-	pentatricopeptide repeat domain 1	protein-coding
207269	chr7	43969051	43969800	+	0	NA	intron (NR_003655, intron 10 of 15)	AluSx1|SINE|Alu	-28443	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
216461	chr8	19629101	19629500	+	0	NA	intron (NM_001354476, intron 1 of 8)	intron (NM_001354476, intron 1 of 8)	-26755	NM_001354499	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
12029	chr1	97724331	97724450	+	0	NA	intron (NM_001160301, intron 4 of 5)	MLT2B4|LTR|ERVL	-72531	NR_046591	100873933		NR_046591	ENSG00000235777	DPYD-AS2	-	DPYD antisense RNA 2	ncRNA
175247	chr4	60423571	60423800	+	0	NA	Intergenic	(AGGG)n|Simple_repeat|Simple_repeat	-498934	NR_039652	100616450		NR_039652	ENSG00000265829	MIR548AG1	-	microRNA 548ag-1	ncRNA
137267	chr2	194465151	194465250	+	0	NA	Intergenic	AluJr|SINE|Alu	120931	NR_110222	101927406		NR_110222	ENSG00000225539	LINC01821	-	long intergenic non-protein coding RNA 1821	ncRNA
149509	chr21	32702721	32702980	+	0	NA	intron (NM_203446, intron 2 of 32)	(TCTTATC)n|Simple_repeat|Simple_repeat	25071	NM_001160306	8867		NM_003895	ENSG00000159082	SYNJ1	DEE53|EIEE53|INPP5G|PARK20	synaptojanin 1	protein-coding
94680	chr17	30506351	30506850	+	0	NA	intron (NM_004871, intron 6 of 8)	Tigger1|DNA|TcMar-Tigger	29192	NM_001007024	9527		NM_004871	ENSG00000108587	GOSR1	GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28	golgi SNAP receptor complex member 1	protein-coding
175323	chr4	68341371	68341630	+	0	NA	intron (NM_001031732, intron 1 of 16)	MER58C|DNA|hAT-Charlie	8590	NM_133370	91746		NM_133370	ENSG00000083896	YTHDC1	YT521|YT521-B	YTH N6-methyladenosine RNA binding protein C1	protein-coding
144738	chr20	36585601	36586050	+	0	NA	intron (NM_001199535, intron 2 of 4)	intron (NM_001199535, intron 2 of 4)	11271	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
48165	chr12	7955621	7956050	+	0	NA	Intergenic	AluJo|SINE|Alu	-19648	NM_006931	6515		NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding
72727	chr15	38689801	38690000	+	0	NA	Intergenic	Intergenic	-6698	NR_160786	400359		NM_207444	ENSG00000175779	LINC02694	C15orf53	long intergenic non-protein coding RNA 2694	ncRNA
73143	chr15	41392071	41392230	+	0	NA	intron (NM_016013, intron 3 of 4)	AluSz|SINE|Alu	10346	NR_045620	51103		NM_016013	ENSG00000137806	NDUFAF1	CGI-65|CGI65|CIA30|MC1DN11	NADH:ubiquinone oxidoreductase complex assembly factor 1	protein-coding
89814	chr16	89563151	89563630	+	0	NA	3' UTR (NM_001243131, exon 7 of 7)	3' UTR (NM_001243131, exon 7 of 7)	1960	NR_002450	606500		NR_002450		SNORD68	HBII-202	small nucleolar RNA, C/D box 68	snoRNA
214281	chr7	149028111	149029630	+	0	NA	promoter-TSS (NM_004911)	promoter-TSS (NM_004911)	-365	NM_004911	9601		NM_004911	ENSG00000155660	PDIA4	ERP70|ERP72|ERp-72	protein disulfide isomerase family A member 4	protein-coding
197963	chr6	89976271	89976630	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	81981	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
172148	chr4	1205051	1205150	+	0	NA	non-coding (NR_024569, exon 2 of 4)	non-coding (NR_024569, exon 2 of 4)	3862	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
202333	chr6	157461671	157461830	+	0	NA	intron (NM_024630, intron 1 of 8)	intron (NM_024630, intron 1 of 8)	-67382	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
83601	chr16	28185501	28185900	+	0	NA	intron (NM_015171, intron 1 of 23)	intron (NM_015171, intron 1 of 23)	26265	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
16334	chr1	154265471	154266330	+	0	NA	intron (NM_001375623, intron 24 of 27)	intron (NM_001375623, intron 24 of 27)	6173	NR_145714	109617023		NR_145714	ENSG00000201129	SNORA58B	-	small nucleolar RNA, H/ACA box 58B	snoRNA
25175	chr10	5443071	5443230	+	0	NA	intron (NM_001047160, intron 3 of 11)	MIRb|SINE|MIR	-3401	NR_073040	10276		NM_005863	ENSG00000173848	NET1	ARHGEF8|NET1A	neuroepithelial cell transforming 1	protein-coding
200035	chr6	129707301	129707750	+	0	NA	intron (NM_033515, intron 1 of 14)	AluJb|SINE|Alu	2652	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
184842	chr5	111510651	111510950	+	0	NA	intron (NR_131754, intron 1 of 4)	intron (NR_131754, intron 1 of 4)	-1426	NR_040093	100505678		NR_040093	ENSG00000246859	STARD4-AS1	-	STARD4 antisense RNA 1	ncRNA
196827	chr6	46491121	46491930	+	0	NA	promoter-TSS (NR_125837)	promoter-TSS (NR_125837)	-76	NM_001251974	10231		NM_005822	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
55826	chr12	108857201	108858780	+	0	NA	promoter-TSS (NM_018984)	promoter-TSS (NM_018984)	-407	NM_001161330	54434		NM_018984	ENSG00000084112	SSH1	SSH1L	slingshot protein phosphatase 1	protein-coding
58803	chr12	132786701	132787150	+	0	NA	intron (NM_005895, intron 13 of 23)	intron (NM_005895, intron 13 of 23)	-25093	NM_015114	23141		NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding
134763	chr2	147082921	147083180	+	0	NA	Intergenic	Intergenic	495993	NR_026904	728773		NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
77182	chr15	80160621	80161050	+	0	NA	intron (NM_001374377, intron 5 of 14)	intron (NM_001374377, intron 5 of 14)	7836	NM_000137	2184		NM_000137	ENSG00000103876	FAH	-	fumarylacetoacetate hydrolase	protein-coding
57712	chr12	122867071	122867230	+	0	NA	exon (NM_024667, exon 4 of 4)	exon (NM_024667, exon 4 of 4)	28974	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
78066	chr15	90145371	90145730	+	0	NA	Intergenic	Intergenic	-39370	NM_020210	10509		NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding
84410	chr16	30352121	30352380	+	0	NA	3' UTR (NM_001243646, exon 6 of 6)	3' UTR (NM_001243646, exon 6 of 6)	2684	NM_001243646	10421		NM_006110	ENSG00000169217	CD2BP2	FWP010|LIN1|PPP1R59|Snu40|U5-52K	CD2 cytoplasmic tail binding protein 2	protein-coding
213548	chr7	139102651	139103250	+	0	NA	intron (NM_020119, intron 1 of 12)	(GTATAT)n|Simple_repeat|Simple_repeat	6770	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
136941	chr2	190314721	190315130	+	0	NA	intron (NM_198047, intron 1 of 12)	intron (NM_198047, intron 1 of 12)	4901	NM_198047	26275		NM_014362	ENSG00000198130	HIBCH	HIBYLCOAH	3-hydroxyisobutyryl-CoA hydrolase	protein-coding
71570	chr14	106417271	106418000	+	0	NA	Intergenic	Intergenic	-64804	NR_027457	338005		NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA
147372	chr20	58410571	58410730	+	0	NA	intron (NM_001195677, intron 1 of 2)	AluSz|SINE|Alu	21421	NR_036633	9217		NM_004738	ENSG00000124164	VAPB	ALS8|VAMP-B|VAP-B	VAMP associated protein B and C	protein-coding
128759	chr2	62202051	62202980	+	0	NA	intron (NM_006577, intron 1 of 1)	intron (NM_006577, intron 1 of 1)	-3311	NR_049824	100847087		NR_049824	ENSG00000266097	MIR5192	-	microRNA 5192	ncRNA
54233	chr12	80462351	80462450	+	0	NA	intron (NM_001145026, intron 6 of 44)	L1PA3|LINE|L1	18165	NM_001145026	374462		NM_001145026	ENSG00000139304	PTPRQ	DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q	protein tyrosine phosphatase receptor type Q	protein-coding
194151	chr6	32038521	32038780	+	0	NA	intron (NM_001128590, intron 1 of 8)	intron (NM_001128590, intron 1 of 8)	235	NM_000500	1589		NM_000500	ENSG00000231852	CYP21A2	CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B	cytochrome P450 family 21 subfamily A member 2	protein-coding
26961	chr10	26637671	26637850	+	0	NA	Intergenic	Intergenic	-5348	NR_026794	731789		NR_026794		FAM238B	LINC00202-2	family with sequence similarity 238 member B	ncRNA
134664	chr2	144464601	144464800	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-54914	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
236191	chrX	65669971	65670550	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	2606	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
121907	chr19	48399501	48402130	+	0	NA	intron (NM_000836, intron 3 of 13)	AluSx|SINE|Alu	7147	NM_000836	2906		NM_000836	ENSG00000105464	GRIN2D	DEE46|EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding
69697	chr14	98176801	98177000	+	0	NA	Intergenic	Intergenic	-198776	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
91213	chr17	3922271	3922430	+	0	NA	Intergenic	L1ME2|LINE|L1	-5885	NM_002558	5023		NM_002558	ENSG00000108405	P2RX1	P2X1	purinergic receptor P2X 1	protein-coding
34438	chr10	132418501	132418950	+	0	NA	TTS (NM_001098637)	TTS (NM_001098637)	21525	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
215894	chr8	8060271	8060650	+	0	NA	Intergenic	Intergenic	28629	NR_031689	100302186		NR_031689	ENSG00000221305	MIR548I3	MIR548I-3|MIRN548I3|hsa-mir-548i-3|mir-548i-3	microRNA 548i-3	ncRNA
205068	chr7	6618571	6619380	+	0	NA	intron (NM_001353546, intron 2 of 2)	Tigger19a|DNA|TcMar-Tigger	3365	NM_001353546	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
211680	chr7	106462351	106462650	+	0	NA	Intergenic	Intergenic	-177517	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
220449	chr8	100375721	100375980	+	0	NA	Intergenic	L2c|LINE|L2	-6913	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
104501	chr17	81207001	81207200	+	0	NA	intron (NM_014984, intron 4 of 25)	intron (NM_014984, intron 4 of 25)	15865	NM_001319228	22994		NM_014984	ENSG00000141577	CEP131	AZ1|AZI1|ZA1	centrosomal protein 131	protein-coding
214000	chr7	143002221	143002550	+	0	NA	intron (NM_001363538, intron 9 of 11)	intron (NM_001363538, intron 9 of 11)	24747	NM_001001658	135924		NM_001001658	ENSG00000179468	OR9A2	-	olfactory receptor family 9 subfamily A member 2	protein-coding
27938	chr10	42072401	42072800	+	0	NA	Intergenic	Intergenic	295445	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
111186	chr19	3431321	3431580	+	0	NA	intron (NM_205843, intron 3 of 10)	AluJb|SINE|Alu	49075	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
24363	chr1	241518751	241520090	+	0	NA	intron (NM_000143, intron 1 of 9)	CpG	335	NM_000143	2271		NM_000143	ENSG00000091483	FH	FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1	fumarate hydratase	protein-coding
132210	chr2	102142621	102143000	+	0	NA	promoter-TSS (NM_000877)	promoter-TSS (NM_000877)	64	NM_000877	3554		NM_000877	ENSG00000115594	IL1R1	CD121A|CRMO3|D2S1473|IL-1R-alpha|IL-1RT1|IL1R|IL1RA|P80	interleukin 1 receptor type 1	protein-coding
224712	chr9	21454321	21454580	+	0	NA	non-coding (NR_027054, exon 4 of 4)	non-coding (NR_027054, exon 4 of 4)	14011	NM_024013	3439		NM_024013	ENSG00000197919	IFNA1	IFL|IFN|IFN-ALPHA|IFN-alphaD|IFNA13|IFNA@|leIF D	interferon alpha 1	protein-coding
193335	chr6	30201851	30202150	+	0	NA	intron (NM_001242783, intron 1 of 8).7	intron (NM_001242783, intron 1 of 8).7	11406	NM_003449	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
40852	chr11	65053421	65054500	+	0	NA	intron (NM_005468, intron 6 of 17)	intron (NM_005468, intron 6 of 17)	4593	NM_005468	10004		NM_005468	ENSG00000168060	NAALADL1	HILAP|I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase like 1	protein-coding
121657	chr19	47490901	47491330	+	0	NA	intron (NR_038456, intron 8 of 11)	intron (NR_038456, intron 8 of 11)	6833	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
6227	chr1	27518651	27518750	+	0	NA	Intergenic	Intergenic	-28533	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
4429	chr1	21274971	21275330	+	0	NA	intron (NM_001397, intron 3 of 18)	intron (NM_001397, intron 3 of 18)	4465	NM_001113347	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
123866	chr19	55265521	55265780	+	0	NA	intron (NM_001130106, intron 7 of 8)	intron (NM_001130106, intron 7 of 8)	-6633	NM_014931	22870		NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding
118116	chr19	34667351	34668430	+	0	NA	intron (NR_027620, intron 1 of 3)	intron (NR_027620, intron 1 of 3)	9141	NR_027620	643719		NR_027620		SCGB1B2P	SCGB4A1P	secretoglobin family 1B member 2, pseudogene	pseudo
158196	chr22	50242351	50242650	+	0	NA	intron (NM_020461, intron 1 of 24)	AluSx|SINE|Alu	2523	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
173706	chr4	15754001	15754700	+	0	NA	Intergenic	Intergenic	-23978	NM_001775	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
27289	chr10	30392471	30393130	+	0	NA	Intergenic	Intergenic	-20893	NR_120609	729668		NR_003524		GOLGA2P6	-	GOLGA2 pseudogene 6	pseudo
211569	chr7	105674471	105675050	+	0	NA	intron (NM_001385596, intron 3 of 11)	intron (NM_001385596, intron 3 of 11)	4395	NM_001318229	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
218610	chr8	56067501	56068000	+	0	NA	3' UTR (NM_001146227, exon 6 of 6)	3' UTR (NM_001146227, exon 6 of 6)	6151	NR_002437	26795		NR_002437	ENSG00000238650	SNORD54	RNU54|U54	small nucleolar RNA, C/D box 54	snoRNA
225529	chr9	35745901	35746730	+	0	NA	intron (NM_001330660, intron 1 of 16)	AluSq2|SINE|Alu	2913	NM_020944	57704		NM_020944	ENSG00000070610	GBA2	AD035|NLGase|SPG46	glucosylceramidase beta 2	protein-coding
89037	chr16	88428751	88429250	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-24280	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
205096	chr7	6740421	6740680	+	0	NA	intron (NR_002217, intron 2 of 5)	L1ME4b|LINE|L1	5245	NR_002217	441194		NR_002217	ENSG00000187953	PMS2CL	PMS2P13	PMS2 C-terminal like (pseudogene)	pseudo
216338	chr8	14457251	14457350	+	0	NA	intron (NM_001322881, intron 2 of 6)	LTR13|LTR|ERVK	396210	NR_029875	494332		NR_029875	ENSG00000199127	MIR383	MIRN383|hsa-mir-383|mir-383	microRNA 383	ncRNA
128931	chr2	64529551	64529650	+	0	NA	intron (NM_203437, intron 1 of 9)	intron (NM_203437, intron 1 of 9)	4087	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
50797	chr12	49057151	49057550	+	0	NA	intron (NM_003482, intron 1 of 54)	intron (NM_003482, intron 1 of 54)	3444	NM_003482	8085		NM_003482	ENSG00000167548	KMT2D	AAD10|ALR|BCAHH|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21	lysine methyltransferase 2D	protein-coding
140608	chr2	233413601	233414600	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	-5112	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
187395	chr5	141885921	141886180	+	0	NA	Intergenic	AluSg|SINE|Alu	-7640	NM_002587	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
102932	chr17	76601251	76601750	+	0	NA	Intergenic	MER41A|LTR|ERV1	-15640	NM_006456	10610		NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding
177228	chr4	108535521	108535980	+	0	NA	Intergenic	Intergenic	-21483	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
129221	chr2	68239071	68239630	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	13182	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
222445	chr8	136195651	136195750	+	0	NA	Intergenic	L1PA2|LINE|L1	-335098	NR_147196	107986980		NR_147196	ENSG00000254101	LINC02055	-	long intergenic non-protein coding RNA 2055	ncRNA
67131	chr14	68654651	68654950	+	0	NA	intron (NM_001321818, intron 10 of 10)	intron (NM_001321818, intron 10 of 10)	-26013	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
155830	chr22	39398201	39398530	+	0	NA	Intergenic	Intergenic	-1415	NM_006116	10454		NM_006116	ENSG00000100324	TAB1	3'-Tab1|MAP3K7IP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein-coding
65745	chr14	53161821	53162100	+	0	NA	Intergenic	MIRc|SINE|MIR	8606	NR_110062	101927620		NR_110062	ENSG00000258731	DDHD1-DT	-	DDHD1 divergent transcript	ncRNA
185418	chr5	130732451	130732630	+	0	NA	Intergenic	L1PA2|LINE|L1	432716	NM_005340	3094		NM_005340	ENSG00000169567	HINT1	HINT|NMAN|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding
226058	chr9	61853721	61855590	+	0	NA	intron (NR_027421, intron 1 of 1)	(TC)n|Simple_repeat|Simple_repeat	571	NR_027421	100132948		NM_001024942	ENSG00000231527	FAM27C	FAM27A|FAM27A1|FAM27A3|bA7G23.5	family with sequence similarity 27 member C	ncRNA
154391	chr22	35298371	35298530	+	0	NA	promoter-TSS (NM_001135729)	promoter-TSS (NM_001135729)	-825	NM_001135729	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
114311	chr19	11963801	11964350	+	0	NA	promoter-TSS (NM_001012753)	promoter-TSS (NM_001012753)	-965	NM_001367174	284390		NM_001012753	ENSG00000197054	ZNF763	ZNF|ZNF440L	zinc finger protein 763	protein-coding
137139	chr2	191050971	191051130	+	0	NA	intron (NM_003151, intron 14 of 23)	(TG)n|Simple_repeat|Simple_repeat	29524	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
207137	chr7	42945821	42946080	+	0	NA	Intergenic	MER107|DNA|hAT-Charlie	13574	NM_031903	64983		NM_031903	ENSG00000106591	MRPL32	HSPC283|L32mt|MRP-L32|bL32m|bMRP-59b	mitochondrial ribosomal protein L32	protein-coding
5888	chr1	26791471	26791630	+	0	NA	intron (NM_001374486, intron 2 of 2)	L2b|LINE|L2	3362	NM_001374482	55650		NM_017837	ENSG00000060642	PIGV	GPI-MT-II|HPMRS1|PIG-V	phosphatidylinositol glycan anchor biosynthesis class V	protein-coding
12399	chr1	101296101	101296500	+	0	NA	Intergenic	AluJb|SINE|Alu	-27537	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
14085	chr1	120856851	120857480	+	0	NA	Intergenic	L2c|LINE|L2	-6180	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA
140958	chr2	237896701	237896900	+	0	NA	intron (NM_005855, intron 2 of 2)	AluJo|SINE|Alu	37177	NM_005855	10267		NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding
123898	chr19	55336321	55336750	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3341	NM_032701	84787		NM_032701	ENSG00000133247	KMT5C	SUV420H2|Suv4-20h2	lysine methyltransferase 5C	protein-coding
213989	chr7	142817701	142818050	+	0	NA	intron (NM_001130026, intron 10 of 10)	L1ME1|LINE|L1	-37139	NM_001280794	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
144390	chr20	35226521	35227400	+	0	NA	exon (NM_006690, exon 1 of 9)	exon (NM_006690, exon 1 of 9)	270	NM_006690	10893		NM_006690	ENSG00000125966	MMP24	MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding
117422	chr19	19635771	19636300	+	0	NA	intron (NM_016573, intron 13 of 20)	AluSz6|SINE|Alu	7622	NM_001288998	51291		NM_016573	ENSG00000089639	GMIP	ARHGAP46	GEM interacting protein	protein-coding
118634	chr19	37276001	37276200	+	0	NA	Intergenic	Intergenic	-7090	NR_029390	284412		NR_029390		LOC284412	-	Putative uncharacterized protein PP6455	ncRNA
46248	chr11	124739371	124740200	+	0	NA	promoter-TSS (NM_001126181)	promoter-TSS (NM_001126181)	-157	NM_006176	4900		NM_006176	ENSG00000154146	NRGN	RC3|hng	neurogranin	protein-coding
57224	chr12	121527671	121528030	+	0	NA	intron (NM_001005366, intron 8 of 22)	intron (NM_001005366, intron 8 of 22)	52396	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
23057	chr1	226626201	226627250	+	0	NA	Intergenic	Intergenic	48343	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
107705	chr18	49562851	49563150	+	0	NA	intron (NM_006033, intron 1 of 9)	(CTCCCC)n|Simple_repeat|Simple_repeat	943	NM_006033	9388		NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding
145831	chr20	45811301	45811500	+	0	NA	TTS (NM_052951)	TTS (NM_052951)	-1176	NM_001281742	11065		NM_007019	ENSG00000175063	UBE2C	UBCH10|dJ447F3.2	ubiquitin conjugating enzyme E2 C	protein-coding
232234	chr9	134383471	134383830	+	0	NA	intron (NM_001291920, intron 1 of 9)	L3b|LINE|CR1	4239	NR_039816	100616236		NR_039816	ENSG00000263897	MIR4669	-	microRNA 4669	ncRNA
185685	chr5	131794601	131795280	+	0	NA	intron (NM_133372, intron 1 of 17)	L1ME1|LINE|L1	2077	NM_001008738	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
145516	chr20	44033671	44033830	+	0	NA	intron (NM_032883, intron 4 of 9)	MLT1D|LTR|ERVL-MaLR	87854	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
158168	chr22	50211201	50211450	+	0	NA	intron (NM_031454, intron 5 of 8)	L1MB3|LINE|L1	10314	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
16653	chr1	155166151	155166450	+	0	NA	Intergenic	Intergenic	7004	NM_173852	200185		NM_173852	ENSG00000163463	KRTCAP2	KCP2	keratinocyte associated protein 2	protein-coding
67838	chr14	73935521	73936150	+	0	NA	intron (NM_152445, intron 8 of 8)	intron (NM_152445, intron 8 of 8)	-14099	NM_182480	51004		NM_182476	ENSG00000119723	COQ6	CGI-10|CGI10|COQ10D6	coenzyme Q6, monooxygenase	protein-coding
181403	chr5	40690971	40691350	+	0	NA	intron (NM_000958, intron 2 of 2)	AluSz|SINE|Alu	11245	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
17921	chr1	160259971	160260330	+	0	NA	intron (NR_028104, intron 1 of 12)	MIRb|SINE|MIR	-1599	NR_147618	100287049		NR_147618	ENSG00000228606	DCAF8-DT	-	DCAF8 divergent transcript	ncRNA
109608	chr19	936551	936650	+	0	NA	intron (NM_005224, intron 3 of 8)	AluSc8|SINE|Alu	10565	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
62006	chr13	81340031	81340230	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-113147	NR_047494	100861546		NR_047494	ENSG00000260094	LINC00564	-	long intergenic non-protein coding RNA 564	ncRNA
97747	chr17	44398221	44398580	+	0	NA	exon (NM_001002909, exon 8 of 8)	exon (NM_001002909, exon 8 of 8)	-8751	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
198356	chr6	105383301	105383500	+	0	NA	intron (NM_002726, intron 2 of 14)	intron (NM_002726, intron 2 of 14)	19682	NM_002726	5550		NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
202039	chr6	153005301	153005700	+	0	NA	3' UTR (NM_012419, exon 5 of 5)	3' UTR (NM_012419, exon 5 of 5)	-2685	NM_001301872	54516		NM_019041	ENSG00000112031	MTRF1L	HMRF1L|MRF1L|mtRF1a	mitochondrial translation release factor 1 like	protein-coding
22314	chr1	213761921	213762290	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-162644	NR_046189	100861504		NR_046189		LINC00538	PROX1UT|Yiya	long intergenic non-protein coding RNA 538	ncRNA
132037	chr2	101001821	101003000	+	0	NA	intron (NM_001098577, intron 1 of 4)	intron (NM_001098577, intron 1 of 4)	121	NM_000993	6160		NM_000993	ENSG00000071082	RPL31	L31|eL31	ribosomal protein L31	protein-coding
71621	chr14	106703721	106704080	+	0	NA	Intergenic	Intergenic	147099	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
125544	chr2	15300921	15301380	+	0	NA	intron (NR_052013, intron 40 of 50)	intron (NR_052013, intron 40 of 50)	260184	NM_015909	51594		NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	NBAS subunit of NRZ tethering complex	protein-coding
75629	chr15	67163871	67164400	+	0	NA	intron (NM_001145103, intron 1 of 8)	AluY|SINE|Alu	-2020	NM_001145104	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
66861	chr14	64990101	64990900	+	0	NA	intron (NM_002028, intron 1 of 11)	LTR33|LTR|ERVL	3605	NM_002028	2342		NM_002028	ENSG00000257365	FNTB	FPTB	farnesyltransferase, CAAX box, subunit beta	protein-coding
196545	chr6	44062801	44063430	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	11537	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
186086	chr5	134108351	134109050	+	0	NA	Intergenic	Intergenic	-5981	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
109958	chr19	1382051	1382400	+	0	NA	Intergenic	AluSx|SINE|Alu	-1682	NM_024407	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
10985	chr1	84477871	84478230	+	0	NA	Intergenic	AluJb|SINE|Alu	-1216	NM_025065	80135		NM_025065	ENSG00000117133	RPF1	BXDC5	ribosome production factor 1 homolog	protein-coding
206695	chr7	36507471	36507930	+	0	NA	Intergenic	Intergenic	92420	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
66168	chr14	60641651	60641950	+	0	NA	Intergenic	Intergenic	2584	NR_126480	104548971		NR_126480		SALRNA1	SAL-RNA1|XLOC_023166	senescence associated long non-coding RNA 1	ncRNA
168479	chr3	143172251	143172350	+	0	NA	Intergenic	Intergenic	52529	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
120424	chr19	43985471	43985800	+	0	NA	intron (NM_001260486, intron 1 of 4)	AluSg|SINE|Alu	1447	NM_198089	7711		NM_003445	ENSG00000204920	ZNF155	pHZ-96	zinc finger protein 155	protein-coding
232380	chr9	135959771	135959930	+	0	NA	intron (NM_016172, intron 1 of 9)	intron (NM_016172, intron 1 of 9)	1523	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
113082	chr19	8261821	8262300	+	0	NA	exon (NM_024552, exon 12 of 12)	exon (NM_024552, exon 12 of 12)	46298	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
237408	chrX	119609721	119610270	+	0	NA	Intergenic	AluSg7|SINE|Alu	-3571	NR_163972	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
118733	chr19	38266521	38266780	+	0	NA	intron (NM_001166103, intron 1 of 5)	AluSz|SINE|Alu	2077	NM_001166103	10653		NM_021102	ENSG00000167642	SPINT2	DIAR3|HAI-2|HAI2|Kop|PB	serine peptidase inhibitor, Kunitz type 2	protein-coding
66400	chr14	61501871	61502030	+	0	NA	intron (NM_006255, intron 10 of 13)	L1ME4b|LINE|L1	68244	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
28155	chr10	43491951	43492050	+	0	NA	Intergenic	AluJb|SINE|Alu	54889	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
129433	chr2	69457451	69457550	+	0	NA	TTS (NM_014911)	TTS (NM_014911)	-17933	NM_001374284	27247		NM_015700	ENSG00000169599	NFU1	CGI-33|HIRIP|HIRIP5|MMDFS|MMDS1|NIFUC|Nfu|NifU	NFU1 iron-sulfur cluster scaffold	protein-coding
233111	chr9	137128671	137128900	+	0	NA	Intergenic	MER90a|LTR|ERV1	-10369	NM_007327	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
106171	chr18	9971371	9971600	+	0	NA	Intergenic	Intergenic	57469	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
56688	chr12	120019121	120019380	+	0	NA	intron (NR_147894, intron 3 of 8)	7SLRNA|srpRNA|srpRNA	29406	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
89489	chr16	89121901	89122100	+	0	NA	intron (NR_147928, intron 8 of 11)	intron (NR_147928, intron 8 of 11)	-14548	NR_045667	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
137248	chr2	191758851	191759240	+	0	NA	Intergenic	Intergenic	-33795	NR_157850	729254		NR_157850	ENSG00000225884	LOC729254	-	hCG2045843	ncRNA
175268	chr4	67519901	67520800	+	0	NA	intron (NR_155754, intron 5 of 18)	intron (NR_155754, intron 5 of 18)	25153	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
39841	chr11	62337251	62338400	+	0	NA	intron (NM_025080, intron 1 of 6)	CpG	377	NM_001083926	80150		NM_025080	ENSG00000162174	ASRGL1	ALP|ALP1|CRASH	asparaginase and isoaspartyl peptidase 1	protein-coding
27547	chr10	32337171	32337630	+	0	NA	intron (NR_168508, intron 1 of 12)	L1MEc|LINE|L1	9758	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
142349	chr20	3751621	3752400	+	0	NA	exon (NM_052970, exon 13 of 13)	exon (NM_052970, exon 13 of 13)	15743	NM_001258430	54976		NM_017874	ENSG00000101220	ADISSP	C20orf27	adipose secreted signaling protein	protein-coding
13636	chr1	116438051	116438530	+	0	NA	intron (NR_125972, intron 2 of 3)	L1MDa|LINE|L1	-19668	NR_027646	84852		NM_032766	ENSG00000203865	ATP1A1-AS1	ATP1A1OS|C1orf203	ATP1A1 antisense RNA 1	ncRNA
188192	chr5	150654171	150654680	+	0	NA	TTS (NM_001166208)	TTS (NM_001166208)	-6416	NM_133371	91977		NM_133371	ENSG00000164591	MYOZ3	CS-3|CS3|FATZ-3|FRP3	myozenin 3	protein-coding
212474	chr7	128526521	128526780	+	0	NA	Intergenic	AluY|SINE|Alu	49902	NM_018396	55798		NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase 2B, tRNA N3-cytidine	protein-coding
163961	chr3	52965951	52966250	+	0	NA	intron (NM_016329, intron 2 of 20)	AluY|SINE|Alu	-68552	NM_001198974	100526772		NM_001198974	ENSG00000248592	STIMATE-MUSTN1	TMEM110-MUSTN1	STIMATE-MUSTN1 readthrough	protein-coding
15030	chr1	148353121	148353930	+	0	NA	Intergenic	Intergenic	9008	NR_104082	101954273		NR_104082	ENSG00000207340	RNVU1-1	RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10	RNA, variant U1 small nuclear 1	snRNA
165190	chr3	72451601	72452000	+	0	NA	Intergenic	Intergenic	-5177	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
144529	chr20	35710971	35711150	+	0	NA	intron (NM_184234, intron 12 of 16)	intron (NM_184234, intron 12 of 16)	11655	NM_080748	140823		NM_080748	ENSG00000125995	ROMO1	C20orf52|MTGM|MTGMP|bA353C18.2	reactive oxygen species modulator 1	protein-coding
53222	chr12	62286451	62287230	+	0	NA	intron (NM_001351164, intron 1 of 21)	AluSp|SINE|Alu	26436	NM_006313	9958		NM_006313	ENSG00000135655	USP15	UNPH-2|UNPH4	ubiquitin specific peptidase 15	protein-coding
3437	chr1	15879021	15880080	+	0	NA	intron (NM_015001, intron 3 of 14)	intron (NM_015001, intron 3 of 14)	-31403	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
121422	chr19	47014221	47014880	+	0	NA	Intergenic	AluJb|SINE|Alu	-5287	NM_002517	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
155054	chr22	37500721	37500980	+	0	NA	intron (NM_014550, intron 11 of 19)	MIR|SINE|MIR	-14463	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
39148	chr11	54258651	54258750	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	345298	NM_001004703	119749		NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
145712	chr20	45034421	45035330	+	0	NA	intron (NM_006282, intron 10 of 10)	AluJo|SINE|Alu	66252	NM_002251	3787		NM_002251	ENSG00000124134	KCNS1	Kv9.1	potassium voltage-gated channel modifier subfamily S member 1	protein-coding
188049	chr5	149895721	149896180	+	0	NA	intron (NM_000440, intron 12 of 21)	intron (NM_000440, intron 12 of 21)	37027	NR_110534	644762		NR_110534		MFFP2	-	MFF pseudogene 2	pseudo
44018	chr11	94954721	94954980	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	18706	NM_016403	51503		NM_016403	ENSG00000150316	CWC15	AD002|C11orf5|Cwf15|HSPC148|ORF5	CWC15 spliceosome associated protein homolog	protein-coding
115462	chr19	15350021	15350480	+	0	NA	Intergenic	AluSx|SINE|Alu	-17711	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
83309	chr16	24542521	24542800	+	0	NA	intron (NM_032626, intron 1 of 2)	AluSz6|SINE|Alu	3073	NM_032626	5930		NM_006910	ENSG00000122257	RBBP6	MY038|P2P-R|PACT|RBQ-1|SNAMA	RB binding protein 6, ubiquitin ligase	protein-coding
18946	chr1	168522671	168523250	+	0	NA	Intergenic	L1MEd|LINE|L1	21037	NM_003175	6846		NM_003175	ENSG00000143185	XCL2	SCM-1b|SCM1B|SCYC2	X-C motif chemokine ligand 2	protein-coding
170235	chr3	184189451	184189750	+	0	NA	exon (NM_001351300, exon 13 of 21)	exon (NM_001351300, exon 13 of 21)	3525	NM_001351299	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
60108	chr13	37057701	37058280	+	0	NA	intron (NM_001014286, intron 1 of 25)	AluSz|SINE|Alu	1497	NM_001278482	55578		NM_017569	ENSG00000102710	SUPT20H	C13|C13orf19|FAM48A|FP757|P38IP|SPT20	SPT20 homolog, SAGA complex component	protein-coding
30237	chr10	75013071	75013230	+	0	NA	intron (NM_012330, intron 13 of 17).2	intron (NM_012330, intron 13 of 17).2	-8583	NR_145812	109623471		NR_145812		SNORD172	-	small nucleolar RNA, C/D box 172	snoRNA
87327	chr16	70285101	70285500	+	0	NA	intron (NM_001605, intron 1 of 20)	AluJr|SINE|Alu	4206	NM_001605	16		NM_001605	ENSG00000090861	AARS1	AARS|CMT2N|DEE29|EIEE29|HDLS2|TTD8	alanyl-tRNA synthetase 1	protein-coding
60460	chr13	41054271	41054730	+	0	NA	intron (NM_001370329, intron 1 of 9)	intron (NM_001370329, intron 1 of 9)	6886	NM_001370330	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
79920	chr16	1721871	1722730	+	0	NA	intron (NM_001318852, intron 1 of 31)	(CTGCCTC)n|Simple_repeat|Simple_repeat	-12685	NR_036138	100423012		NR_036138	ENSG00000265820	MIR3177	mir-3177	microRNA 3177	ncRNA
169008	chr3	152437501	152438180	+	0	NA	intron (NM_207296, intron 4 of 8)	AluSx|SINE|Alu	-96850	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
55447	chr12	104578721	104579400	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-12573	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
32670	chr10	103901201	103901600	+	0	NA	intron (NM_024928, intron 4 of 9)	intron (NM_024928, intron 4 of 9)	16784	NM_024928	79991		NM_024928	ENSG00000107960	STN1	AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2	STN1 subunit of CST complex	protein-coding
115575	chr19	15836601	15837830	+	0	NA	TTS (NR_015379)	TTS (NR_015379)	8268	NR_015379	652995		NR_015379	ENSG00000214049	UCA1	CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36	urothelial cancer associated 1	ncRNA
5962	chr1	26903951	26904250	+	0	NA	Intergenic	Intergenic	-3633	NM_022078	63906		NM_022078	ENSG00000198746	GPATCH3	GPATC3	G-patch domain containing 3	protein-coding
163855	chr3	52487451	52487550	+	0	NA	exon (NM_007184, exon 16 of 21)	exon (NM_007184, exon 16 of 21)	-7838	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
37686	chr11	27698871	27699300	+	0	NA	TTS (NR_033312)	TTS (NR_033312)	582	NM_170734	627		NM_001709	ENSG00000176697	BDNF	ANON2|BULN2	brain derived neurotrophic factor	protein-coding
2124	chr1	8224921	8225180	+	0	NA	Intergenic	Intergenic	16378	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
40918	chr11	65211651	65211950	+	0	NA	non-coding (NR_040008, exon 21 of 21)	non-coding (NR_040008, exon 21 of 21)	-2040	NR_033396	440044		NM_001004326	ENSG00000293475	SLC22A20P	Oat6|SLC22A20	solute carrier family 22 member 20, pseudogene	pseudo
122205	chr19	48959651	48960280	+	0	NA	intron (NM_001291428, intron 4 of 5)	AluSx1|SINE|Alu	5090	NM_138761	581		NM_004324	ENSG00000087088	BAX	BCL2L4	BCL2 associated X, apoptosis regulator	protein-coding
60495	chr13	41313451	41314080	+	0	NA	intron (NM_024561, intron 1 of 19)	MIR3|SINE|MIR	-1727	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
154846	chr22	37097671	37098300	+	0	NA	intron (NM_153609, intron 3 of 17)	CpG	5671	NM_153609	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
177110	chr4	108089121	108089380	+	0	NA	exon (NM_001166119, exon 4 of 11)	exon (NM_001166119, exon 4 of 11)	77547	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
84657	chr16	30739501	30740130	+	0	NA	promoter-TSS (NM_001256829)	promoter-TSS (NM_001256829)	-827	NM_001256829	100862671		NM_001256829	ENSG00000281991	TMEM265	IFITMD8	transmembrane protein 265	protein-coding
60801	chr13	45331021	45331480	+	0	NA	Intergenic	Intergenic	5197	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
32521	chr10	102812421	102812680	+	0	NA	intron (NM_017787, intron 3 of 3)	intron (NM_017787, intron 3 of 3)	24863	NM_000102	1586		NM_000102	ENSG00000148795	CYP17A1	CPT7|CYP17|P450C17|S17AH	cytochrome P450 family 17 subfamily A member 1	protein-coding
82246	chr16	15071421	15071680	+	0	NA	intron (NM_018427, intron 12 of 17)	AluSx1|SINE|Alu	-15471	NM_001270766	123803		NM_173474	ENSG00000157045	NTAN1	PNAA|PNAD	N-terminal asparagine amidase	protein-coding
203488	chr7	585351	586130	+	0	NA	intron (NM_001164759, intron 7 of 10)	MIRb|SINE|MIR	-17105	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
164269	chr3	57569601	57570600	+	0	NA	intron (NM_001322176, intron 2 of 2)	intron (NM_001322176, intron 2 of 2)	13826	NM_177966	201626		NM_177966	ENSG00000174840	PDE12	2'-PDE|2-PDE	phosphodiesterase 12	protein-coding
20372	chr1	197949021	197949930	+	0	NA	Intergenic	L2b|LINE|L2	32103	NM_001370213	56956		NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding
172239	chr4	1345621	1348100	+	0	NA	promoter-TSS (NM_020894)	promoter-TSS (NM_020894)	-348	NM_001317934	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
167216	chr3	128438551	128438850	+	0	NA	Intergenic	Intergenic	-24894	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
95412	chr17	36076051	36076350	+	0	NA	Intergenic	MER91A|DNA|hAT-Tip100	11928	NM_002988	6362		NM_002988	ENSG00000275385	CCL18	AMAC-1|AMAC1|CKb7|DC-CK1|DCCK1|MIP-4|PARC|SCYA18	C-C motif chemokine ligand 18	protein-coding
109870	chr19	1239551	1240850	+	0	NA	Intergenic	CpG	-1551	NM_001001975	513		NM_001687	ENSG00000099624	ATP5F1D	ATP5D|MC5DN5	ATP synthase F1 subunit delta	protein-coding
192714	chr6	26330051	26330630	+	0	NA	Intergenic	tRNA-Met-i|tRNA|tRNA	-34819	NM_001197249	11118		NM_007047	ENSG00000186470	BTN3A2	BT3.2|BTF4|BTN3.2|CD277	butyrophilin subfamily 3 member A2	protein-coding
109345	chr19	614401	614880	+	0	NA	intron (NM_001194, intron 7 of 7)	L2c|LINE|L2	18897	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
180173	chr5	1467501	1467700	+	0	NA	intron (NM_024830, intron 12 of 13)	intron (NM_024830, intron 12 of 13)	-22160	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
132128	chr2	101698841	101700800	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	1555	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
195923	chr6	41784421	41784750	+	0	NA	intron (NM_013397, intron 4 of 7)	intron (NM_013397, intron 4 of 7)	-3109	NM_001134493	100188893		NM_001134493	ENSG00000214736	TOMM6	OBTP|TOM6	translocase of outer mitochondrial membrane 6	protein-coding
20901	chr1	202161701	202162600	+	0	NA	promoter-TSS (NM_001199797)	promoter-TSS (NM_001199797)	-562	NR_037664	5778		NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase non-receptor type 7	protein-coding
75321	chr15	65306921	65307180	+	0	NA	Intergenic	L1M5|LINE|L1	2373	NR_002757	26832		NR_002757	ENSG00000200156	RNU5B-1	RNU5B|RNU5B-1P|U5B1	RNA, U5B small nuclear 1	snRNA
71329	chr14	105414521	105416030	+	0	NA	Intergenic	CpG	4464	NR_125384	100507437		NR_125384	ENSG00000251602	MTA1-DT	-	MTA1 divergent transcript	ncRNA
148175	chr20	63536901	63539630	+	0	NA	promoter-TSS (NM_001256358)	promoter-TSS (NM_001256358)	-889	NM_005975	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
14959	chr1	147926771	147927400	+	0	NA	Intergenic	Intergenic	-1289	NM_001350182	51463		NM_016334	ENSG00000188092	GPR89B	GPHR|GPR89|GPR89C|LINC02804|SH120|UNQ192	G protein-coupled receptor 89B	protein-coding
136675	chr2	181058521	181058950	+	0	NA	intron (NM_001278554, intron 4 of 5)	intron (NM_001278554, intron 4 of 5)	-65102	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
86530	chr16	67165511	67166400	+	0	NA	exon (NM_001374675, exon 4 of 13)	exon (NM_001374675, exon 4 of 13)	1210	NM_001374675	3299		NM_001538	ENSG00000102878	HSF4	CTM|CTRCT5	heat shock transcription factor 4	protein-coding
203615	chr7	947971	948330	+	0	NA	intron (NM_001284308, intron 1 of 10)	intron (NM_001284308, intron 1 of 10)	-2334	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
176921	chr4	102815371	102815530	+	0	NA	intron (NM_181893, intron 1 of 6)	intron (NM_181893, intron 1 of 6)	10410	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
53675	chr12	68446451	68447030	+	0	NA	intron (NR_120458, intron 1 of 3)	intron (NR_120458, intron 1 of 3)	4744	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
156082	chr22	40049671	40049830	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSx|SINE|Alu	4933	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
73184	chr15	41500221	41500480	+	0	NA	intron (NM_002220, intron 1 of 6)	intron (NM_002220, intron 1 of 6)	6476	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
120209	chr19	42293571	42294050	+	0	NA	exon (NM_001304815, exon 17 of 21)	exon (NM_001304815, exon 17 of 21)	-8322	NM_199285	284338		NM_199285	ENSG00000188368	PRR19	-	proline rich 19	protein-coding
97969	chr17	45246571	45249350	+	0	NA	promoter-TSS (NR_024434)	promoter-TSS (NR_024434)	35	NR_110326	100133991		NR_024434		MAP3K14-AS1	-	MAP3K14 antisense RNA 1	ncRNA
53714	chr12	68610141	68611740	+	0	NA	promoter-TSS (NM_015646)	promoter-TSS (NM_015646)	41	NM_001251922	5908		NM_015646	ENSG00000127314	RAP1B	K-REV|RAL1B|THC11	RAP1B, member of RAS oncogene family	protein-coding
168497	chr3	143451301	143451500	+	0	NA	intron (NM_173653, intron 12 of 15)	intron (NM_173653, intron 12 of 15)	109154	NR_048544	100885796		NR_048544	ENSG00000240012	SLC9A9-AS1	-	SLC9A9 antisense RNA 1	ncRNA
6072	chr1	27150521	27151250	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	4240	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
57516	chr12	122122051	122122550	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	43544	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
212102	chr7	116173021	116173330	+	0	NA	Intergenic	Intergenic	-37364	NM_015641	26136		NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding
90376	chr17	1263571	1264130	+	0	NA	Intergenic	AluSx|SINE|Alu	-6594	NM_001164405	727857		NM_001164405	ENSG00000205899	BHLHA9	BHLHF42|CCSPD	basic helix-loop-helix family member a9	protein-coding
208154	chr7	64568101	64568530	+	0	NA	Intergenic	Intergenic	-5188	NM_001130022	340252		NM_178558	ENSG00000173041	ZNF680	-	zinc finger protein 680	protein-coding
119459	chr19	40420651	40421680	+	0	NA	TTS (NM_013376)	TTS (NM_013376)	4827	NM_013376	29950		NM_013376	ENSG00000197019	SERTAD1	SEI1|TRIP-Br1|TRIPBR1	SERTA domain containing 1	protein-coding
227680	chr9	92994071	92994430	+	0	NA	intron (NM_001369951, intron 3 of 17)	L1PA5|LINE|L1	19781	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
25416	chr10	6561601	6562030	+	0	NA	intron (NM_001323265, intron 1 of 17)	intron (NM_001323265, intron 1 of 17)	18461	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
142043	chr20	1696571	1697000	+	0	NA	intron (NR_164369, intron 3 of 4)	intron (NR_164369, intron 3 of 4)	25507	NR_164369	105369219		NR_164369		SIRPB3P	-	signal regulatory protein beta 3, pseudogene	pseudo
36518	chr11	6469071	6469330	+	0	NA	intron (NM_001248006, intron 1 of 11)	intron (NM_001248006, intron 1 of 11)	4741	NM_033278	10612		NM_006458	ENSG00000110171	TRIM3	BERP|HAC1|RNF22|RNF97	tripartite motif containing 3	protein-coding
135076	chr2	156527151	156527450	+	0	NA	intron (NM_000408, intron 6 of 16)	intron (NM_000408, intron 6 of 16)	90921	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
192613	chr6	26052871	26053230	+	0	NA	Intergenic	AluSg7|SINE|Alu	3420	NM_005319	3006		NM_005319	ENSG00000187837	H1-2	H1.2|H1C|H1F2|H1s-1|HIST1H1C	H1.2 linker histone, cluster member	protein-coding
168836	chr3	152255171	152255950	+	0	NA	intron (NM_001376839, intron 2 of 10)	L2a|LINE|L2	11928	NM_001376819	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
127186	chr2	38465701	38465930	+	0	NA	intron (NR_110259, intron 4 of 4)	intron (NR_110259, intron 4 of 4)	34521	NR_146454	100996902		NR_146454	ENSG00000235009	LINC01883	-	long intergenic non-protein coding RNA 1883	ncRNA
131153	chr2	91521051	91521350	+	0	NA	Intergenic	(CTGGCTTGG)n|Simple_repeat|Simple_repeat	138749	NR_027238	654342		NR_027238		LSP1P4	-	LSP1 pseudogene 4	pseudo
191490	chr6	11221251	11221550	+	0	NA	intron (NM_001142393, intron 2 of 7)	AluSx3|SINE|Alu	11268	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
146202	chr20	48776971	48777530	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	50749	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
207028	chr7	38463251	38463940	+	0	NA	intron (NM_139316, intron 9 of 19)	intron (NM_139316, intron 9 of 19)	122018	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
133785	chr2	127703901	127704100	+	0	NA	3' UTR (NM_018383, exon 22 of 22)	3' UTR (NM_018383, exon 22 of 22)	2503	NM_032740	84826		NM_032740	ENSG00000173349	SFT2D3	-	SFT2 domain containing 3	protein-coding
140870	chr2	237475071	237476280	+	0	NA	Intergenic	CpG	-10735	NM_001281474	79083		NM_024101	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding
29064	chr10	67883871	67885600	+	0	NA	promoter-TSS (NM_012238)	promoter-TSS (NM_012238)	79	NM_012238	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
24001	chr1	235245921	235246180	+	0	NA	intron (NM_016374, intron 7 of 23)	intron (NM_016374, intron 7 of 23)	-55934	NR_039908	100616224		NR_039908	ENSG00000263439	MIR4753	mir-4753	microRNA 4753	ncRNA
117907	chr19	32800801	32801000	+	0	NA	intron (NM_001366102, intron 18 of 32)	intron (NM_001366102, intron 18 of 32)	68867	NM_001243036	11136		NM_014270	ENSG00000021488	SLC7A9	BAT1|CSNU3	solute carrier family 7 member 9	protein-coding
175296	chr4	67739951	67740050	+	0	NA	3' UTR (NM_001012763, exon 3 of 3)	3' UTR (NM_001012763, exon 3 of 3)	14388	NM_001012763	2798		NM_000406	ENSG00000109163	GNRHR	GNRHR1|GRHR|HH7|LHRHR|LRHR	gonadotropin releasing hormone receptor	protein-coding
168511	chr3	143832571	143832880	+	0	NA	intron (NM_173653, intron 1 of 15)	intron (NM_173653, intron 1 of 15)	15743	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
140345	chr2	232610221	232610480	+	0	NA	intron (NM_001243252, intron 1 of 3)	intron (NM_001243252, intron 1 of 3)	4293	NM_001243252	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
230550	chr9	128415801	128416080	+	0	NA	intron (NR_031672, intron 2 of 2).4	AluYc|SINE|Alu	-3220	NM_001286760	51148		NM_016174	ENSG00000167123	CERCAM	CEECAM1|GLT25D3	cerebral endothelial cell adhesion molecule	protein-coding
126818	chr2	30488321	30488580	+	0	NA	intron (NM_001304445, intron 3 of 7)	intron (NM_001304445, intron 3 of 7)	41204	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
12691	chr1	109480821	109481080	+	0	NA	3' UTR (NM_001040709, exon 6 of 6)	3' UTR (NM_001040709, exon 6 of 6)	-2955	NM_153340	127002		NM_153340	ENSG00000162650	ATXN7L2	-	ataxin 7 like 2	protein-coding
10059	chr1	58723101	58723300	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-23138	NM_001085487	114803		NM_001085487	ENSG00000162601	MYSM1	2A-DUB|2ADUB|BMFS4	Myb like, SWIRM and MPN domains 1	protein-coding
227569	chr9	92189401	92189790	+	0	NA	intron (NM_001350291, intron 1 of 3)	intron (NM_001350291, intron 1 of 3)	1561	NM_001350291	138652		NM_001350291	ENSG00000276717	PRSS47P	PRSS47	serine protease 47, pseudogene	pseudo
188343	chr5	151447341	151448780	+	0	NA	intron (NM_078483, intron 1 of 10)	intron (NM_078483, intron 1 of 10)	457	NM_001308150	206358		NM_078483	ENSG00000123643	SLC36A1	Dct1|LYAAT1|PAT1|TRAMD3	solute carrier family 36 member 1	protein-coding
150871	chr21	44113901	44114380	+	0	NA	intron (NM_005049, intron 3 of 20).2	intron (NM_005049, intron 3 of 20).2	6741	NM_001368238	102724159		NM_001368238	ENSG00000275464	LOC102724159	-	periodic tryptophan protein 2 homolog	protein-coding
191761	chr6	14071951	14072300	+	0	NA	Intergenic	Intergenic	-45131	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
224516	chr9	19113651	19113950	+	0	NA	Intergenic	AluSg|SINE|Alu	-10896	NM_001270890	54801		NM_017645	ENSG00000147874	HAUS6	Dgt6|FAM29A	HAUS augmin like complex subunit 6	protein-coding
34793	chr11	235671	237350	+	0	NA	promoter-TSS (NM_175932)	promoter-TSS (NM_175932)	-148	NM_001017524	23410		NM_012239	ENSG00000142082	SIRT3	SIR2L3	sirtuin 3	protein-coding
70757	chr14	103417851	103418350	+	0	NA	intron (NM_002376, intron 2 of 15)	HAL1|LINE|L1	32685	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
96281	chr17	39919471	39919700	+	0	NA	promoter-TSS (NM_001165959)	promoter-TSS (NM_001165959)	-935	NM_001165958	55876		NM_018530	ENSG00000073605	GSDMB	GSDMB-1|GSDML|PP4052|PRO2521	gasdermin B	protein-coding
173502	chr4	9497551	9497880	+	0	NA	Intergenic	CpG	53181	NM_001040448	644414		NM_001040448	ENSG00000186146	DEFB131A	DEFB-31|DEFB131	defensin beta 131A	protein-coding
225390	chr9	35040701	35041300	+	0	NA	promoter-TSS (NM_001040412)	promoter-TSS (NM_001040412)	-95	NM_001040411	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
189937	chr5	177393801	177394000	+	0	NA	intron (NM_003052, intron 9 of 12)	intron (NM_003052, intron 9 of 12)	6761	NM_001029886	345456		NM_001029886	ENSG00000196570	PFN3	profilin-3	profilin 3	protein-coding
161581	chr3	42964251	42964550	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-14911	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
117657	chr19	23992201	23992600	+	0	NA	Intergenic	Intergenic	-34447	NR_149007	100505851		NR_149007	ENSG00000269289	LOC100505851	-	uncharacterized LOC100505851	ncRNA
188227	chr5	150789851	150790500	+	0	NA	intron (NM_032947, intron 1 of 1)	intron (NM_032947, intron 1 of 1)	12229	NM_032947	85027		NM_032947	ENSG00000256235	SMIM3	C5orf62|MST150|NID67	small integral membrane protein 3	protein-coding
36382	chr11	3987271	3987430	+	0	NA	intron (NM_001382568, intron 2 of 11)	intron (NM_001382568, intron 2 of 11)	-107335	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
224831	chr9	26975851	26975950	+	0	NA	intron (NM_025103, intron 2 of 19)	HERVIP10F-int|LTR|ERV1	19488	NM_025103	80173		NM_025103	ENSG00000096872	IFT74	BBS22|CCDC2|CMG-1|CMG1|JBTS40|SPGF58	intraflagellar transport 74	protein-coding
61594	chr13	72808701	72809400	+	0	NA	intron (NM_006346, intron 5 of 17)	intron (NM_006346, intron 5 of 17)	26917	NR_146206	10464		NM_006346	ENSG00000083535	PIBF1	C13orf24|CEP90|JBTS33|PIBF	progesterone immunomodulatory binding factor 1	protein-coding
60286	chr13	40626421	40626680	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	40091	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
121600	chr19	47406951	47407700	+	0	NA	intron (NM_001009813, intron 9 of 12)	CpG-14795	12202	NM_020160	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
173935	chr4	25655651	25655750	+	0	NA	promoter-TSS (NM_006424)	promoter-TSS (NM_006424)	-151	NM_001177998	10568		NM_006424	ENSG00000157765	SLC34A2	NAPI-3B|NAPI-IIb|NPTIIb|NaPi2b|PULAM	solute carrier family 34 member 2	protein-coding
154879	chr22	37142071	37142450	+	0	NA	intron (NM_000878, intron 4 of 9)	intron (NM_000878, intron 4 of 9)	7656	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
46112	chr11	122880571	122880730	+	0	NA	Intergenic	Intergenic	-1878	NM_199124	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
221106	chr8	118049771	118049930	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	61976	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
124080	chr19	55622971	55623130	+	0	NA	intron (NM_203374, intron 1 of 1)	AluSx1|SINE|Alu	1516	NM_203374	147808		NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
113633	chr19	10329021	10329380	+	0	NA	intron (NM_133452, intron 2 of 12)	intron (NM_133452, intron 2 of 12)	4329	NM_133452	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
220839	chr8	102867021	102867280	+	0	NA	intron (NR_126338, intron 1 of 3)	AluY|SINE|Alu	2879	NR_126338	100506753		NR_126338		MAILR	AZIN1-AS1|H22954|MAIL1	macrophage interferon regulatory lncRNA	ncRNA
72630	chr15	38389921	38390200	+	0	NA	Intergenic	L1MD2|LINE|L1	-64067	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
180720	chr5	28951251	28951350	+	0	NA	Intergenic	Intergenic	24430	NR_033961	729862		NR_033961		LSP1P3	-	LSP1 pseudogene 3	pseudo
169464	chr3	168165721	168165980	+	0	NA	Intergenic	Intergenic	-69926	NM_014498	27333		NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
235024	chrX	40013371	40013780	+	0	NA	Intergenic	CpG	84383	NM_001123385	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
87097	chr16	68524071	68524430	+	0	NA	Intergenic	Intergenic	-14963	NM_001305204	146198		NM_133458	ENSG00000184939	ZFP90	FIK|NK10|ZNF756|zfp-90	ZFP90 zinc finger protein	protein-coding
104628	chr17	81434371	81434800	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	16603	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
211987	chr7	113421601	113422000	+	0	NA	Intergenic	MamGypLTR2b|LTR|Gypsy	-303218	NM_001352687	401397		NM_001352687	ENSG00000214194	SMIM30	LINC00998|MAVI1	small integral membrane protein 30	protein-coding
67637	chr14	73060201	73060480	+	0	NA	intron (NM_021239, intron 1 of 18)	intron (NM_021239, intron 1 of 18)	1806	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
121950	chr19	48471001	48471550	+	0	NA	intron (NM_017457, intron 3 of 11)	AluSx1|SINE|Alu	1906	NM_004228	9266		NM_004228	ENSG00000105443	CYTH2	ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2	cytohesin 2	protein-coding
66902	chr14	65243721	65244300	+	0	NA	Intergenic	L2c|LINE|L2	-21663	NR_103769	100128233		NR_103769	ENSG00000255002	LINC02324	-	long intergenic non-protein coding RNA 2324	ncRNA
6115	chr1	27341171	27342800	+	0	NA	promoter-TSS (NM_001193308)	promoter-TSS (NM_001193308)	-37	NM_032872	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
193470	chr6	30530971	30531130	+	0	NA	Intergenic	AluJo|SINE|Alu	14784	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
70277	chr14	101732771	101733100	+	0	NA	TTS (NR_026774)	TTS (NR_026774)	2498	NR_026774	145200		NR_026774	ENSG00000258512	LINC00239	C14orf72|NCRNA00239	long intergenic non-protein coding RNA 239	ncRNA
224337	chr9	6770921	6771180	+	0	NA	intron (NR_148677, intron 1 of 21)	AluSx4|SINE|Alu	13077	NM_001304340	23081		NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding
60073	chr13	33723571	33724180	+	0	NA	Intergenic	Intergenic	-47081	NM_001243476	90627		NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding
218917	chr8	60796121	60797250	+	0	NA	intron (NM_017780, intron 4 of 37)	intron (NM_017780, intron 4 of 37)	55426	NM_001316690	55636		NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
214057	chr7	143384421	143384780	+	0	NA	intron (NM_001362783, intron 4 of 8).2	intron (NM_001362783, intron 4 of 8).2	1914	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
66371	chr14	61475201	61475630	+	0	NA	intron (NM_006255, intron 9 of 13)	intron (NM_006255, intron 9 of 13)	94779	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
98424	chr17	46771421	46772530	+	0	NA	intron (NM_030753, intron 2 of 4)	CpG	46717	NM_030753	7473		NM_030753	ENSG00000108379	WNT3	INT4|TETAMS	Wnt family member 3	protein-coding
29998	chr10	73761871	73762230	+	0	NA	intron (NM_198597, intron 6 of 22)	intron (NM_198597, intron 6 of 22)	-10226	NM_173540	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
150377	chr21	42237551	42239950	+	0	NA	intron (NM_207628, intron 4 of 16)	intron (NM_207628, intron 4 of 16)	18852	NM_207174	9619		NM_004915	ENSG00000160179	ABCG1	ABC8|WHITE1	ATP binding cassette subfamily G member 1	protein-coding
222769	chr8	141715971	141716200	+	0	NA	Intergenic	Intergenic	70228	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
5293	chr1	25145901	25146300	+	0	NA	Intergenic	Intergenic	86402	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
188076	chr5	150149501	150150100	+	0	NA	intron (NM_001355017, intron 1 of 22)	intron (NM_001355017, intron 1 of 22)	6045	NM_002609	5159		NM_002609	ENSG00000113721	PDGFRB	CD140B|IBGC4|IMF1|JTK12|KOGS|PDGFR|PDGFR-1|PDGFR1|PENTT	platelet derived growth factor receptor beta	protein-coding
158147	chr22	50184001	50184480	+	0	NA	Intergenic	Intergenic	-1673	NR_135275	80305		NM_025204	ENSG00000170638	TRABD	LP6054|PP2447	TraB domain containing	protein-coding
7433	chr1	32974001	32974630	+	0	NA	Intergenic	SVA_E|Retroposon|SVA	-9506	NM_001127361	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
113734	chr19	10481071	10481800	+	0	NA	Intergenic	AluYf1|SINE|Alu	21336	NM_012289	9817		NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding
197514	chr6	75754021	75754280	+	0	NA	intron (NR_160538, intron 1 of 32)	intron (NR_160538, intron 1 of 32)	4911	NR_160538	4646		NM_004999	ENSG00000196586	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
114254	chr19	11539721	11540200	+	0	NA	intron (NM_001308341, intron 2 of 7)	intron (NM_001308341, intron 2 of 7)	1109	NM_001308341	1264		NM_001299	ENSG00000130176	CNN1	HEL-S-14|SMCC|Sm-Calp	calponin 1	protein-coding
124201	chr19	56403451	56404900	+	0	NA	promoter-TSS (NM_001159861)	promoter-TSS (NM_001159861)	-157	NM_152478	147949		NM_152478	ENSG00000198440	ZNF583	-	zinc finger protein 583	protein-coding
184432	chr5	99004621	99005430	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	75891	NR_036530	100289230		NR_036530	ENSG00000248489	LOC100289230	-	uncharacterized LOC100289230	ncRNA
85682	chr16	56415901	56416100	+	0	NA	intron (NM_001144, intron 1 of 13)	intron (NM_001144, intron 1 of 13)	8989	NM_001323511	267		NM_001144	ENSG00000159461	AMFR	GP78|RNF45|SPG89	autocrine motility factor receptor	protein-coding
42822	chr11	72829901	72830380	+	0	NA	TTS (NM_001318766)	TTS (NM_001318766)	15729	NM_001318766	89849		NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding
142376	chr20	3802901	3803500	+	0	NA	exon (NM_021873, exon 13 of 16)	exon (NM_021873, exon 13 of 16)	3138	NM_001287524	994		NM_004358	ENSG00000101224	CDC25B	-	cell division cycle 25B	protein-coding
71127	chr14	104968621	104968880	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	1757	NM_001350929	113146		NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding
160261	chr3	25653051	25653350	+	0	NA	intron (NM_001330700, intron 1 of 35)	L1MB2|LINE|L1	11172	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
64973	chr14	37197871	37198100	+	0	NA	promoter-TSS (NM_001195296)	promoter-TSS (NM_001195296)	48	NM_138731	145282		NM_138731	ENSG00000151338	MIPOL1	CCDC193	mirror-image polydactyly 1	protein-coding
42993	chr11	73962401	73962800	+	0	NA	intron (NM_153614, intron 3 of 7)	intron (NM_153614, intron 3 of 7)	11574	NM_001377263	374407		NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
23441	chr1	228445651	228446600	+	0	NA	Intergenic	CpG	11748	NM_033445	92815		NM_033445	ENSG00000181218	H2AC25	H2AW|HIST3H2A	H2A clustered histone 25	protein-coding
135343	chr2	160392021	160392480	+	0	NA	intron (NM_016836, intron 1 of 13)	intron (NM_016836, intron 1 of 13)	15632	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
177363	chr4	110410851	110411150	+	0	NA	Intergenic	L1PA2|LINE|L1	-65155	NR_166844	2028		NM_001977	ENSG00000138792	ENPEP	APA|CD249|gp160	glutamyl aminopeptidase	protein-coding
166489	chr3	114299421	114301000	+	0	NA	intron (NM_173799, intron 3 of 3)	intron (NM_173799, intron 3 of 3)	6182	NM_173799	201633		NM_173799	ENSG00000181847	TIGIT	VSIG9|VSTM3|WUCAM	T cell immunoreceptor with Ig and ITIM domains	protein-coding
95635	chr17	37764801	37765400	+	0	NA	Intergenic	Intergenic	-20041	NM_000458	6928		NM_000458	ENSG00000275410	HNF1B	ADTKD3|FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|RCAD|T2D|TCF-2|TCF2|VHNF1	HNF1 homeobox B	protein-coding
135227	chr2	159283571	159284030	+	0	NA	intron (NM_001330280, intron 1 of 9)	MER1B|DNA|hAT-Charlie	2903	NM_001330278	151525		NM_152528	ENSG00000196151	WDSUB1	UBOX6|WDSAM1	WD repeat, sterile alpha motif and U-box domain containing 1	protein-coding
205229	chr7	7980121	7980600	+	0	NA	intron (NM_138426, intron 1 of 7)	intron (NM_138426, intron 1 of 7)	11564	NM_138426	113263		NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
219020	chr8	64084121	64084200	+	0	NA	intron (NR_125826, intron 4 of 4)	L1PA6|LINE|L1	284398	NR_125826	102724623		NR_125826	ENSG00000253554	LINC01414	-	long intergenic non-protein coding RNA 1414	ncRNA
109521	chr19	849151	849250	+	0	NA	Intergenic	AluSx|SINE|Alu	-3103	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
24873	chr10	924421	924800	+	0	NA	intron (NM_001351277, intron 1 of 17)	intron (NM_001351277, intron 1 of 17)	7095	NM_001351277	23185		NM_015155	ENSG00000107929	LARP4B	KIAA0217|LARP5	La ribonucleoprotein 4B	protein-coding
96806	chr17	41918501	41920030	+	0	NA	promoter-TSS (NM_198830)	promoter-TSS (NM_198830)	-243	NM_001303274	47		NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding
213710	chr7	140239351	140239850	+	0	NA	Intergenic	Intergenic	62339	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
92061	chr17	7509901	7510280	+	0	NA	intron (NM_000937, intron 22 of 29)	intron (NM_000937, intron 22 of 29)	25724	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
135192	chr2	158455701	158457200	+	0	NA	promoter-TSS (NM_001304969)	promoter-TSS (NM_001304969)	303	NM_001301685	130940		NM_138803	ENSG00000153237	CCDC148	-	coiled-coil domain containing 148	protein-coding
178606	chr4	152045621	152045880	+	0	NA	Intergenic	MIR3|SINE|MIR	-55003	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
223002	chr8	143273451	143273750	+	0	NA	intron (NM_138465, intron 2 of 3)	intron (NM_138465, intron 2 of 3)	6155	NM_138465	2738		NM_138465	ENSG00000250571	GLI4	HKR4|ZNF928	GLI family zinc finger 4	protein-coding
225738	chr9	37033651	37033750	+	0	NA	intron (NR_103999, intron 1 of 8)	intron (NR_103999, intron 1 of 8)	568	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
51985	chr12	53956271	53957300	+	0	NA	3' UTR (NM_173860, exon 2 of 2)	3' UTR (NM_173860, exon 2 of 2)	1882	NM_173860	3228		NM_173860	ENSG00000123407	HOXC12	HOC3F|HOX3|HOX3F	homeobox C12	protein-coding
17174	chr1	156222821	156223530	+	0	NA	intron (NM_001199664, intron 1 of 4)	intron (NM_001199664, intron 1 of 4)	10187	NM_001199653	11243		NM_007221	ENSG00000160783	PMF1	-	polyamine modulated factor 1	protein-coding
87129	chr16	69105751	69106530	+	0	NA	promoter-TSS (NM_138612)	promoter-TSS (NM_138612)	-82	NM_138612	3038		NM_005329	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding
205047	chr7	6574621	6575300	+	0	NA	Intergenic	AluJr|SINE|Alu	-2474	NM_001134387	55146		NM_018106	ENSG00000136247	ZDHHC4	ZNF374	zinc finger DHHC-type palmitoyltransferase 4	protein-coding
135049	chr2	156342301	156343980	+	0	NA	Intergenic	Intergenic	-1020	NR_147695	440918		NR_147695		FLJ46875	-	uncharacterized LOC440918	ncRNA
177069	chr4	108045451	108045950	+	0	NA	Intergenic	Intergenic	41036	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
80012	chr16	1923221	1924300	+	0	NA	Intergenic	Intergenic	-5345	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
83107	chr16	22471321	22471580	+	0	NA	intron (NR_027154, intron 10 of 28)	intron (NR_027154, intron 10 of 28)	-32999	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
178956	chr4	159125371	159125550	+	0	NA	intron (NM_001351724, intron 1 of 30)	intron (NM_001351724, intron 1 of 30)	-3345	NR_039963	100616303		NR_039963	ENSG00000283379	MIR3688-2	mir-3688-2	microRNA 3688-2	ncRNA
174016	chr4	26458171	26458530	+	0	NA	Intergenic	Intergenic	32134	NM_000730	886		NM_000730	ENSG00000163394	CCKAR	CCK-1R|CCK-A|CCK1-R|CCK1R|CCKRA	cholecystokinin A receptor	protein-coding
117878	chr19	32670701	32670900	+	0	NA	intron (NM_032139, intron 1 of 28)	AluSz|SINE|Alu	4380	NM_032139	84079		NM_032139	ENSG00000105186	ANKRD27	PP12899|VARP	ankyrin repeat domain 27	protein-coding
26802	chr10	23429851	23430150	+	0	NA	Intergenic	AluJr|SINE|Alu	-9075	NM_001145373	220213		NM_001145373	ENSG00000165312	OTUD1	DUBA7|OTDC1	OTU deubiquitinase 1	protein-coding
140521	chr2	233218921	233219380	+	0	NA	Intergenic	Intergenic	-32421	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
11797	chr1	92583301	92585100	+	0	NA	intron (NM_001377211, intron 17 of 18)	intron (NM_001377211, intron 17 of 18)	-97275	NM_005263	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
213567	chr7	139251751	139252050	+	0	NA	intron (NM_173569, intron 2 of 17)	intron (NM_173569, intron 2 of 17)	20663	NM_173569	254048		NM_173569	ENSG00000157741	UBN2	-	ubinuclein 2	protein-coding
161306	chr3	39388671	39389730	+	0	NA	intron (NM_001354798, intron 1 of 5)	intron (NM_001354798, intron 1 of 5)	5830	NM_017875	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
75091	chr15	64429251	64429630	+	0	NA	intron (NR_135855, intron 10 of 11)	intron (NR_135855, intron 10 of 11)	-31138	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
105244	chr17	82414551	82415580	+	0	NA	intron (NR_033265, intron 2 of 9)	intron (NR_033265, intron 2 of 9)	-3282	NM_173620	284004		NM_173620	ENSG00000169660	HEXD	HEXDC	hexosaminidase D	protein-coding
71099	chr14	104880351	104880800	+	0	NA	intron (NM_001112726, intron 6 of 18)	intron (NM_001112726, intron 6 of 18)	15261	NR_162135	113219454		NR_162135		MIR12121	-	microRNA 12121	ncRNA
210853	chr7	101089671	101089830	+	0	NA	3' UTR (NM_030961, exon 3 of 3)	3' UTR (NM_030961, exon 3 of 3)	4269	NM_030961	81844		NM_030961	ENSG00000169871	TRIM56	RNF109	tripartite motif containing 56	protein-coding
123659	chr19	54817601	54818200	+	0	NA	intron (NM_001282170, intron 2 of 10).6	intron (NM_001282170, intron 2 of 10).6	1436	NM_001083539	3813		NM_001083539		KIR3DS1	CD158E2|KIR-123FM|KIR-G1|NKAT-10|NKAT10	killer cell immunoglobulin like receptor, three Ig domains and short cytoplasmic tail 1	protein-coding
69898	chr14	99439871	99440030	+	0	NA	intron (NM_032233, intron 6 of 12)	AluJb|SINE|Alu	40909	NM_032233	84193		NM_032233	ENSG00000183576	SETD3	C14orf154|hSETD3	SET domain containing 3, actin N3(tau)-histidine methyltransferase	protein-coding
99619	chr17	50557971	50558380	+	0	NA	intron (NR_038439, intron 1 of 1)	L2c|LINE|L2	-2540	NM_198377	8913		NM_018896	ENSG00000006283	CACNA1G	Ca(V)T.1|Cav3.1|NBR13|SCA42|SCA42ND	calcium voltage-gated channel subunit alpha1 G	protein-coding
155440	chr22	38463121	38463880	+	0	NA	Intergenic	Intergenic	-4562	NM_016657	11015		NM_006855	ENSG00000100196	KDELR3	ERD23|ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding
222835	chr8	142567151	142567450	+	0	NA	Intergenic	Intergenic	47179	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
107936	chr18	57881901	57882130	+	0	NA	Intergenic	Intergenic	-78700	NM_001374385	5205		NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
49054	chr12	14399751	14400200	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	14694	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
63210	chr13	113835921	113836180	+	0	NA	intron (NM_000820, intron 6 of 14)	intron (NM_000820, intron 6 of 14)	20440	NR_044995	650669		NM_001039799		GAS6-AS1	-	GAS6 antisense RNA 1	ncRNA
235942	chrX	53261601	53262000	+	0	NA	intron (NM_001111125, intron 2 of 14)	intron (NM_001111125, intron 2 of 14)	19784	NM_015075	23096		NM_015075	ENSG00000124313	IQSEC2	BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78|XLID1	IQ motif and Sec7 domain ArfGEF 2	protein-coding
32409	chr10	102447471	102448030	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2067	NR_038938	100505761		NR_038937	ENSG00000269609	C10orf95-AS1	RPARP-AS1	C10orf95 antisense RNA 1	ncRNA
88005	chr16	80932051	80932530	+	0	NA	Intergenic	CpG	-39694	NR_131947	100996425		NR_131947	ENSG00000260896	ARLNC1	LINC02170|PRCAT47	androgen receptor regulated long noncoding RNA 1	ncRNA
145441	chr20	43472821	43473080	+	0	NA	Intergenic	Intergenic	15054	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
123909	chr19	55347721	55348000	+	0	NA	3' UTR (NM_032701, exon 9 of 9)	3' UTR (NM_032701, exon 9 of 9)	6859	NM_144613	125965		NM_144613	ENSG00000160471	COX6B2	COXVIB2|CT59	cytochrome c oxidase subunit 6B2	protein-coding
84912	chr16	31221251	31221800	+	0	NA	intron (NM_001008274, intron 5 of 6)	intron (NM_001008274, intron 5 of 6)	-4390	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
164137	chr3	56735101	56735980	+	0	NA	intron (NM_001289698, intron 9 of 10)	intron (NM_001289698, intron 9 of 10)	40177	NM_001128616	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
49542	chr12	26346751	26346850	+	0	NA	intron (NM_002223, intron 55 of 56)	MIR3|SINE|MIR	151227	NM_005086	8082		NM_005086	ENSG00000123096	SSPN	DAGA5|KRAG|NSPN|SPN1|SPN2	sarcospan	protein-coding
172167	chr4	1223871	1224830	+	0	NA	intron (NM_001377193, intron 5 of 9)	intron (NM_001377193, intron 5 of 9)	14230	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
220765	chr8	102405451	102405750	+	0	NA	intron (NM_001282873, intron 1 of 58)	AluSg|SINE|Alu	-6739	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
69191	chr14	92663051	92663150	+	0	NA	intron (NM_024832, intron 7 of 9)	AluJb|SINE|Alu	85527	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
150520	chr21	42925421	42926000	+	0	NA	promoter-TSS (NM_001308491)	promoter-TSS (NM_001308491)	-112	NM_001308491	90625		NM_001308491	ENSG00000233056	ERVH48-1	C21orf105|NDUFV3-AS1|SUPYN	endogenous retrovirus group 48 member 1, envelope	protein-coding
112426	chr19	6275151	6275850	+	0	NA	intron (NM_005934, intron 1 of 11)	intron (NM_005934, intron 1 of 11)	4475	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
184997	chr5	115167701	115168100	+	0	NA	intron (NM_018700, intron 1 of 9)	THE1D|LTR|ERVL-MaLR	2008	NM_001300759	55521		NM_018700	ENSG00000152503	TRIM36	ANPH|ANPH1|HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding
114648	chr19	13022801	13023830	+	0	NA	promoter-TSS (NM_001378404)	promoter-TSS (NM_001378404)	-657	NM_001271044	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
27799	chr10	35635521	35635850	+	0	NA	Intergenic	Intergenic	5567	NR_039831	100616500		NR_039831	ENSG00000284265	MIR4683	-	microRNA 4683	ncRNA
190634	chr5	181211121	181211500	+	0	NA	Intergenic	Intergenic	-6114	NM_203293	81786		NM_033342	ENSG00000146054	TRIM7	GNIP|RNF90	tripartite motif containing 7	protein-coding
229891	chr9	126515301	126515630	+	0	NA	Intergenic	Intergenic	-98463	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
201312	chr6	144360371	144360880	+	0	NA	intron (NM_007124, intron 1 of 73)	LTR16C|LTR|ERVL	-45030	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA
26262	chr10	14665271	14665830	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-61149	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
4478	chr1	21438971	21439130	+	0	NA	Intergenic	Intergenic	-1087	NM_001377492	84224		NM_032264	ENSG00000142794	NBPF3	AE2	NBPF member 3	protein-coding
64600	chr14	30375251	30375550	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-183723	NM_001308097	55632		NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
77839	chr15	88648521	88648900	+	0	NA	intron (NM_001303237, intron 2 of 3)	MIRb|SINE|MIR	9694	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
203865	chr7	1466671	1467130	+	0	NA	Intergenic	Intergenic	-7430	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
168505	chr3	143814521	143814780	+	0	NA	intron (NM_173653, intron 2 of 15)	MER53|DNA|hAT	33818	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
222381	chr8	133693001	133693400	+	0	NA	Intergenic	Intergenic	-9134	NR_134463	105375773		NR_134462	ENSG00000289906	LINC03024	-	long intergenic non-protein coding RNA 3024	ncRNA
208382	chr7	66666271	66666630	+	0	NA	intron (NM_001367722, intron 1 of 7)	intron (NM_001367722, intron 1 of 7)	11883	NM_001367727	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
223228	chr8	143606521	143607280	+	0	NA	intron (NM_023078, intron 3 of 5)	intron (NM_023078, intron 3 of 5)	2675	NM_001329866	65263		NM_023078	ENSG00000104524	PYCR3	PYCRL	pyrroline-5-carboxylate reductase 3	protein-coding
63411	chr13	114081951	114082050	+	0	NA	intron (NM_001320821, intron 1 of 25).2	MER5B|DNA|hAT-Charlie	-4045	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
96266	chr17	39857551	39857850	+	0	NA	intron (NM_183231, intron 1 of 5)	intron (NM_183231, intron 1 of 5)	6488	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
6230	chr1	27520851	27521900	+	0	NA	Intergenic	MIR3|SINE|MIR	-31208	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
97463	chr17	43714601	43714850	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	44066	NM_025237	50964		NM_025237	ENSG00000167941	SOST	CDD|DAND6|SOST1|VBCH	sclerostin	protein-coding
166390	chr3	113529371	113529530	+	0	NA	Intergenic	MER89-int|LTR|ERV1	-2921	NM_001308350	54847		NM_017699	ENSG00000072858	SIDT1	SID-1|SID1	SID1 transmembrane family member 1	protein-coding
84842	chr16	31122351	31123230	+	0	NA	intron (NM_032188, intron 3 of 10)	AluY|SINE|Alu	5126	NM_032188	84148		NM_032188	ENSG00000103510	KAT8	LIGOWS|MOF|MYST1|ZC2HC8|hMOF	lysine acetyltransferase 8	protein-coding
203951	chr7	1553301	1553700	+	0	NA	intron (NM_001097620, intron 2 of 8)	intron (NM_001097620, intron 2 of 8)	2705	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
126668	chr2	29118021	29118580	+	0	NA	intron (NM_024692, intron 1 of 15)	intron (NM_024692, intron 1 of 15)	2885	NM_024692	79745		NM_024692	ENSG00000115295	CLIP4	RSNL2	CAP-Gly domain containing linker protein family member 4	protein-coding
172006	chr4	961271	961630	+	0	NA	intron (NM_001347, intron 21 of 22)	intron (NM_001347, intron 21 of 22)	12119	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
138930	chr2	218227351	218228550	+	0	NA	intron (NM_152862, intron 3 of 10)	L1MC5|LINE|L1	10553	NM_005731	10109		NM_005731	ENSG00000163466	ARPC2	ARC34|PNAS-139|PRO2446|p34-Arc	actin related protein 2/3 complex subunit 2	protein-coding
190733	chr6	339101	339900	+	0	NA	intron (NR_104474, intron 3 of 5)	intron (NR_104474, intron 3 of 5)	47443	NR_104475	56940		NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding
56332	chr12	112908421	112908950	+	0	NA	exon (NM_001032409, exon 2 of 6)	exon (NM_001032409, exon 2 of 6)	1723	NM_001320151	4938		NM_002534	ENSG00000089127	OAS1	E18/E16|IFI-4|IMD100|OIAS|OIASI	2'-5'-oligoadenylate synthetase 1	protein-coding
14453	chr1	144411821	144413300	+	0	NA	promoter-TSS (NR_104076)	promoter-TSS (NR_104076)	-16	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
76169	chr15	72962101	72962300	+	0	NA	Intergenic	Intergenic	-90263	NM_002499	4756		NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding
26591	chr10	22133901	22134100	+	0	NA	Intergenic	Intergenic	75983	NM_001199938	340900		NM_001199938	ENSG00000223601	EBLN1	EBLN-1	endogenous Bornavirus like nucleoprotein 1	protein-coding
139220	chr2	219290521	219291330	+	0	NA	intron (NM_001199763, intron 19 of 21)	intron (NM_001199763, intron 19 of 21)	3275	NR_029688	406944		NR_029688	ENSG00000207647	MIR153-1	MIRN153-1|mir-153-1	microRNA 153-1	ncRNA
120036	chr19	41963421	41963680	+	0	NA	Intergenic	L1ME2|LINE|L1	-4229	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
170287	chr3	184322471	184322800	+	0	NA	exon (NM_001194946, exon 13 of 34)	exon (NM_001194946, exon 13 of 34)	2372	NM_004953	1981		NM_004953	ENSG00000114867	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma 1	protein-coding
203601	chr7	936071	936230	+	0	NA	intron (NM_001284308, intron 1 of 10)	AluY|SINE|Alu	-8934	NM_001284310	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
49445	chr12	24900821	24901280	+	0	NA	intron (NM_001178092, intron 1 of 8)	L2c|LINE|L2	1172	NM_001178094	586		NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding
105371	chr17	82671151	82671580	+	0	NA	intron (NM_006822, intron 1 of 5)	intron (NM_006822, intron 1 of 5)	-3058	NR_039751	100616196		NR_039751	ENSG00000266107	MIR4525	-	microRNA 4525	ncRNA
17675	chr1	157705021	157705480	+	0	NA	Intergenic	L1PA11|LINE|L1	-4481	NM_052939	115352		NM_052939	ENSG00000160856	FCRL3	CD307c|FCRH3|IFGP3|IRTA3|MAIA|SPAP2	Fc receptor like 3	protein-coding
215249	chr7	156927471	156927830	+	0	NA	Intergenic	Intergenic	-22062	NM_138400	64434		NM_138400	ENSG00000146909	NOM1	C7orf3|PPP1R113|SGD1	nucleolar protein with MIF4G domain 1	protein-coding
82578	chr16	18785501	18785700	+	0	NA	intron (NM_001019, intron 3 of 4)	intron (NM_001019, intron 3 of 4)	4734	NM_001019	6210		NM_001019	ENSG00000134419	RPS15A	DBA20|S15a|uS8	ribosomal protein S15a	protein-coding
233564	chrX	282221	282580	+	0	NA	intron (NR_163416, intron 1 of 7)	AluSq2|SINE|Alu	1019	NM_018390	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
228364	chr9	99086021	99086280	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-18963	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
65628	chr14	52299551	52300050	+	0	NA	Intergenic	Intergenic	-14512	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
71975	chr15	25693901	25694100	+	0	NA	intron (NM_024490, intron 14 of 20)	intron (NM_024490, intron 14 of 20)	154825	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
192863	chr6	27237421	27237830	+	0	NA	Intergenic	tRNA-Ile-ATT|tRNA|tRNA	-10076	NM_005865	10279		NM_005865	ENSG00000112812	PRSS16	TSSP	serine protease 16	protein-coding
110356	chr19	1893171	1893400	+	0	NA	Intergenic	AluSg|SINE|Alu	-7789	NM_031213	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
17714	chr1	158830151	158830450	+	0	NA	Intergenic	Intergenic	-1051	NM_002432	4332		NM_002432	ENSG00000163563	MNDA	PYHIN3	myeloid cell nuclear differentiation antigen	protein-coding
13516	chr1	114753821	114754800	+	0	NA	intron (NM_001242891, intron 1 of 20)	intron (NM_001242891, intron 1 of 20)	3674	NM_001007553	7812		NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding
8990	chr1	44651751	44651850	+	0	NA	TTS (NM_001319956)	TTS (NM_001319956)	19256	NR_145816	109623472		NR_145816		SNORD145	-	small nucleolar RNA, C/D box 145	snoRNA
23240	chr1	227785571	227786400	+	0	NA	promoter-TSS (NR_168380)	promoter-TSS (NR_168380)	-827	NR_168381	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
101913	chr17	74455051	74455350	+	0	NA	Intergenic	Intergenic	-11173	NM_001330456	11314		NM_007261	ENSG00000167851	CD300A	CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60	CD300a molecule	protein-coding
105658	chr18	2578001	2578200	+	0	NA	exon (NM_006101, exon 5 of 17)	exon (NM_006101, exon 5 of 17)	6543	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
234054	chrX	7074271	7074430	+	0	NA	intron (NM_001178135, intron 3 of 3)	AluJo|SINE|Alu	-72940	NM_001320750	412		NM_000351	ENSG00000101846	STS	ARSC|ARSC1|ASC|ES|SSDD|XLI	steroid sulfatase	protein-coding
182676	chr5	67350321	67351030	+	0	NA	Intergenic	Intergenic	-153876	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
238914	chrX	154724351	154724680	+	0	NA	intron (NR_104114, intron 1 of 8)	MIR3|SINE|MIR	26562	NM_001282283	139716		NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding
101282	chr17	66395501	66395700	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	21254	NR_110822	101928001		NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
226190	chr9	65195871	65196500	+	0	NA	Intergenic	CpG	51252	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
131528	chr2	96564751	96565050	+	0	NA	Intergenic	Intergenic	27021	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
44703	chr11	111542421	111543180	+	0	NA	intron (NM_001258390, intron 2 of 7)	L2a|LINE|L2	2080	NM_178834	143903		NM_178834	ENSG00000204381	LAYN	-	layilin	protein-coding
126696	chr2	30154121	30154400	+	0	NA	intron (NM_001127400, intron 2 of 3)	intron (NM_001127400, intron 2 of 3)	7253	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
178852	chr4	153809101	153809730	+	0	NA	Intergenic	MIRb|SINE|MIR	-20332	NM_003013	6423		NM_003013	ENSG00000145423	SFRP2	FRP-2|SARP1|SDF-5	secreted frizzled related protein 2	protein-coding
209040	chr7	74655471	74656800	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	-1530	NM_001280800	2969		NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding
119541	chr19	40590971	40591280	+	0	NA	exon (NM_138392, exon 18 of 18)	exon (NM_138392, exon 18 of 18)	-2041	NM_003573	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
45180	chr11	117281071	117281230	+	0	NA	intron (NM_207343, intron 8 of 14)	AluJb|SINE|Alu	-10196	NR_037803	100379571		NR_037803		BACE1-AS	BACE1-AS1|BACE1AS|NCRNA00177	BACE1 antisense RNA	ncRNA
10580	chr1	67339371	67340150	+	0	NA	intron (NM_001374259, intron 9 of 16)	MIRb|SINE|MIR	31887	NM_001374259	3595		NM_001559	ENSG00000081985	IL12RB2	-	interleukin 12 receptor subunit beta 2	protein-coding
36638	chr11	7657451	7657630	+	0	NA	3' UTR (NM_001351857, exon 25 of 25)	3' UTR (NM_001351857, exon 25 of 25)	15351	NM_001302827	51700		NM_016229	ENSG00000166394	CYB5R2	B5R.2	cytochrome b5 reductase 2	protein-coding
231984	chr9	133310451	133310570	+	0	NA	Intergenic	L1PA3|LINE|L1	25678	NR_103874	6838		NM_006753	ENSG00000148296	SURF6	RRP14	surfeit 6	protein-coding
221067	chr8	116875971	116876130	+	0	NA	non-coding (NR_033886, exon 2 of 2)	non-coding (NR_033886, exon 2 of 2)	-1250	NR_037404	100500914		NR_037404	ENSG00000283956	MIR3610	mir-3610	microRNA 3610	ncRNA
7836	chr1	36317921	36318180	+	0	NA	intron (NM_024676, intron 7 of 12)	L2|LINE|L2	5595	NM_001304762	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
105908	chr18	3441301	3441630	+	0	NA	intron (NM_174886, intron 2 of 3)	MER20|DNA|hAT-Charlie	-6077	NM_173207	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
215027	chr7	152416471	152417280	+	0	NA	intron (NM_170606, intron 1 of 58)	AluSz|SINE|Alu	19128	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
168164	chr3	139677201	139678450	+	0	NA	5' UTR (NM_001363968, exon 1 of 6)	5' UTR (NM_001363968, exon 1 of 6)	147	NM_001320510	349565		NM_178177	ENSG00000163864	NMNAT3	FKSG76|PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
81014	chr16	4206621	4207330	+	0	NA	5' UTR (NM_001323668, exon 2 of 7)	5' UTR (NM_001323668, exon 2 of 7)	35105	NM_001098814	6345		NM_001098814	ENSG00000185739	SRL	SAR	sarcalumenin	protein-coding
108983	chr18	79684001	79685800	+	0	NA	intron (NM_001202504, intron 1 of 12)	intron (NM_001202504, intron 1 of 12)	3470	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
114960	chr19	13997201	13997580	+	0	NA	intron (NM_002918, intron 1 of 20)	MIRb|SINE|MIR	8930	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
95134	chr17	35046471	35047180	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	16882	NM_001017368	117584		NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding
108212	chr18	63156311	63156750	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	163239	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
122211	chr19	48967201	48967680	+	0	NA	TTS (NM_000146)	TTS (NM_000146)	2131	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
132553	chr2	106195601	106195800	+	0	NA	Intergenic	Intergenic	-1399	NM_001377504	80146		NM_025076	ENSG00000115652	UXS1	SDR6E1|UGD|hUXS|hUXS1	UDP-glucuronate decarboxylase 1	protein-coding
121264	chr19	46696671	46696830	+	0	NA	intron (NM_001079881, intron 10 of 18)	AluSc|SINE|Alu	12604	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
86610	chr16	67364801	67365280	+	0	NA	intron (NM_001161575, intron 3 of 10)	intron (NM_001161575, intron 3 of 10)	17685	NM_001161575	55282		NM_018296	ENSG00000159708	LRRC36	RORBP70|XLHSRF2	leucine rich repeat containing 36	protein-coding
37661	chr11	22828471	22828630	+	0	NA	intron (NM_148893, intron 1 of 3)	L2a|LINE|L2	829	NR_135213	258010		NM_148893	ENSG00000198168	SVIP	-	small VCP interacting protein	protein-coding
157649	chr22	46124201	46124400	+	0	NA	Intergenic	Intergenic	10614	NR_029479	406884		NR_029479	ENSG00000284520	MIRLET7B	LET7B|MIRNLET7B|hsa-let-7b|let-7b	microRNA let-7b	ncRNA
233105	chr9	137124871	137125030	+	0	NA	Intergenic	AluYc3|SINE|Alu	-10217	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
235846	chrX	49919651	49920100	+	0	NA	Intergenic	Intergenic	-2721	NM_001272102	1184		NM_000084	ENSG00000171365	CLCN5	CLC5|CLCK2|ClC-5|DENT1|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2	chloride voltage-gated channel 5	protein-coding
115224	chr19	14500251	14500700	+	0	NA	Intergenic	AluY|SINE|Alu	-4326	NM_202494	10755		NM_005716	ENSG00000123159	GIPC1	C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|OPDM2|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2	GIPC PDZ domain containing family member 1	protein-coding
211502	chr7	105257451	105257750	+	0	NA	intron (NM_001350741, intron 2 of 16)	MER113|DNA|hAT-Charlie	11477	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
62383	chr13	99258101	99259830	+	0	NA	promoter-TSS (NM_001098200)	promoter-TSS (NM_001098200)	-537	NM_005292	2841		NM_005292	ENSG00000125245	GPR18	DRV2	G protein-coupled receptor 18	protein-coding
81837	chr16	11579751	11580730	+	0	NA	intron (NR_024320, intron 1 of 3)	MER34C2|LTR|ERV1	6133	NM_004862	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
189985	chr5	177453871	177455000	+	0	NA	intron (NM_030567, intron 2 of 3)	CpG	6110	NM_001174102	80758		NM_030567	ENSG00000131188	PRR7	-	proline rich 7, synaptic	protein-coding
112782	chr19	7475051	7475150	+	0	NA	Intergenic	AluSz6|SINE|Alu	13935	NM_001270539	92960		NM_080662	ENSG00000104883	PEX11G	PEX11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding
92753	chr17	14693471	14693630	+	0	NA	Intergenic	L1M3de|LINE|L1	-321255	NR_135638	101928475		NR_135638	ENSG00000232058	LOC101928475	-	uncharacterized LOC101928475	ncRNA
57636	chr12	122510671	122511300	+	0	NA	intron (NR_036434, intron 8 of 10)	AluJo|SINE|Alu	-10053	NM_001350935	55596		NM_017612	ENSG00000033030	ZCCHC8	PFBMFT5	zinc finger CCHC-type containing 8	protein-coding
227706	chr9	93031371	93031730	+	0	NA	intron (NM_001369951, intron 15 of 17)	intron (NM_001369951, intron 15 of 17)	-16606	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
190116	chr5	177978671	177978830	+	0	NA	Intergenic	Intergenic	17492	NM_006261	5626		NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding
46772	chr11	129881601	129881900	+	0	NA	exon (NM_006165, exon 10 of 25)	exon (NM_006165, exon 10 of 25)	11259	NM_006165	4798		NM_006165	ENSG00000170322	NFRKB	INO80G	nuclear factor related to kappaB binding protein	protein-coding
126940	chr2	33477601	33478080	+	0	NA	intron (NM_001349976, intron 1 of 17)	intron (NM_001349976, intron 1 of 17)	1191	NM_001349981	25780		NM_015376	ENSG00000152689	RASGRP3	GRP3	RAS guanyl releasing protein 3	protein-coding
102446	chr17	75691621	75691880	+	0	NA	intron (NM_001301855, intron 4 of 11)	intron (NM_001301855, intron 4 of 11)	24412	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
204259	chr7	2628971	2629130	+	0	NA	Intergenic	AluJr|SINE|Alu	-2936	NM_025250	80727		NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding
134257	chr2	135529851	135532250	+	0	NA	promoter-TSS (NM_001286569)	promoter-TSS (NM_001286569)	168	NM_032143	84083		NM_032143	ENSG00000121988	ZRANB3	4933425L19Rik|AH2	zinc finger RANBP2-type containing 3	protein-coding
203739	chr7	1151371	1151530	+	0	NA	3' UTR (NM_001365383, exon 6 of 6)	3' UTR (NM_001365383, exon 6 of 6)	8746	NM_001365381	90637		NM_182491	ENSG00000178381	ZFAND2A	AIRAP	zinc finger AN1-type containing 2A	protein-coding
125095	chr2	9710971	9711330	+	0	NA	Intergenic	LTR45B|LTR|ERV1	-80153	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
17222	chr1	156281121	156281720	+	0	NA	intron (NM_001323617, intron 2 of 22)	intron (NM_001323617, intron 2 of 22)	1405	NM_015327	23381		NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5 nonsense mediated mRNA decay factor	protein-coding
133737	chr2	127414601	127415100	+	0	NA	Intergenic	Intergenic	-3577	NM_001375603	5624		NM_000312	ENSG00000115718	PROC	APC|PC|PROC1|THPH3|THPH4	protein C, inactivator of coagulation factors Va and VIIIa	protein-coding
196094	chr6	42322721	42322980	+	0	NA	intron (NM_033502, intron 3 of 17)	LTR33|LTR|ERVL	-104989	NM_018141	55173		NM_018141	ENSG00000048544	MRPS10	MRP-S10|PNAS-122|uS10m	mitochondrial ribosomal protein S10	protein-coding
124493	chr19	58568871	58569850	+	0	NA	exon (NM_001267033, exon 5 of 6)	exon (NM_001267033, exon 5 of 6)	3975	NM_001267033	7593		NM_003422	ENSG00000099326	MZF1	MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6	myeloid zinc finger 1	protein-coding
89983	chr16	89842751	89843500	+	0	NA	intron (NM_032451, intron 1 of 14)	intron (NM_032451, intron 1 of 14)	14650	NM_032451	84501		NM_032451	ENSG00000204991	SPIRE2	Spir-2	spire type actin nucleation factor 2	protein-coding
162181	chr3	46995201	46995600	+	0	NA	exon (NM_015175, exon 13 of 54)	exon (NM_015175, exon 13 of 54)	7410	NM_001365116	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
159447	chr3	13885421	13885900	+	0	NA	Intergenic	Intergenic	-5589	NM_004625	7476		NM_004625	ENSG00000154764	WNT7A	Wnt-7a	Wnt family member 7A	protein-coding
50287	chr12	46370821	46372100	+	0	NA	intron (NM_001307936, intron 1 of 14)	CpG	1313	NM_001307936	54407		NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding
107832	chr18	54222851	54223900	+	0	NA	promoter-TSS (NR_002970)	promoter-TSS (NR_002970)	-963	NR_002970	677819		NR_002970	ENSG00000207233	SNORA37	ACA37	small nucleolar RNA, H/ACA box 37	snoRNA
886	chr1	1651221	1651480	+	0	NA	intron (NM_001291345, intron 4 of 19)	intron (NM_001291345, intron 4 of 19)	7654	NM_033487	984		NM_001787	ENSG00000248333	CDK11B	CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1	cyclin dependent kinase 11B	protein-coding
200251	chr6	132386151	132386250	+	0	NA	intron (NM_015529, intron 1 of 11)	AluY|SINE|Alu	15275	NM_015529	26002		NM_015529	ENSG00000079931	MOXD1	MOX|PRO5780|dJ248E1.1	monooxygenase DBH like 1	protein-coding
169197	chr3	156793051	156793300	+	0	NA	intron (NR_038387, intron 1 of 2)	L2a|LINE|L2	18846	NR_003284	647033		NR_003284		PA2G4P4	PA2G4L1	proliferation-associated 2G4 pseudogene 4	pseudo
198013	chr6	90107751	90108450	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	188743	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
222506	chr8	140514321	140514580	+	0	NA	non-coding (NR_040712, exon 2 of 3)	non-coding (NR_040712, exon 2 of 3)	2454	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
194953	chr6	35292501	35292900	+	0	NA	exon (NM_001292032, exon 10 of 13)	exon (NM_001292032, exon 10 of 13)	-5118	NM_022047	50619		NM_022047	ENSG00000023892	DEF6	IBP|IMD87|SLAT|SWAP70L	DEF6 guanine nucleotide exchange factor	protein-coding
46252	chr11	124746071	124747330	+	0	NA	TTS (NM_014312)	TTS (NM_014312)	5555	NM_001329920	23584		NM_014312	ENSG00000019102	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
85338	chr16	50157751	50158250	+	0	NA	intron (NM_001040284, intron 2 of 12)	AluJb|SINE|Alu	4694	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
59859	chr13	30607601	30608280	+	0	NA	intron (NM_001370340, intron 1 of 4)	MLT1F|LTR|ERVL-MaLR	9647	NM_001370340	3146		NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
148643	chr21	6080951	6081650	+	0	NA	Intergenic	Intergenic	10365	NR_152722	284836		NM_194309	ENSG00000188660	LINC00319	C21orf125|NCRNA00319|PRED49	long intergenic non-protein coding RNA 319	ncRNA
224385	chr9	9058621	9058700	+	0	NA	intron (NM_002839, intron 10 of 45)	AluYe5|SINE|Alu	200642	NR_121599	101929407		NR_121599	ENSG00000225706	PTPRD-AS1	-	PTPRD antisense RNA 1	ncRNA
136143	chr2	174251571	174252080	+	0	NA	Intergenic	Intergenic	-3293	NM_013341	29789		NM_013341	ENSG00000138430	OLA1	DOC45|GBP45|GTBP9|GTPBP9|PTD004	Obg like ATPase 1	protein-coding
117582	chr19	21580171	21580730	+	0	NA	Intergenic	Intergenic	-69218	NR_144514	400682		NR_144514		LOC400682	-	zinc finger protein 100-like	pseudo
230778	chr9	128919221	128919650	+	0	NA	Intergenic	Intergenic	-1547	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
100562	chr17	62672301	62672580	+	0	NA	intron (NM_006039, intron 8 of 29)	MIR|SINE|MIR	-33766	NR_147886	105371855		NR_147886	ENSG00000265702	LOC105371855	-	uncharacterized LOC105371855	ncRNA
92273	chr17	8063951	8064250	+	0	NA	Intergenic	CpG	23616	NM_001139	242		NM_001139	ENSG00000179477	ALOX12B	12R-LOX|ARCI2	arachidonate 12-lipoxygenase, 12R type	protein-coding
20523	chr1	198681201	198683080	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	43100	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
31935	chr10	100568001	100568430	+	0	NA	Intergenic	Intergenic	32272	NM_017902	55662		NM_017902	ENSG00000166135	HIF1AN	FIH1	hypoxia inducible factor 1 subunit alpha inhibitor	protein-coding
32903	chr10	110169821	110170800	+	0	NA	Intergenic	Intergenic	-18330	NR_164121	105378479		NR_164121		LOC105378479	-	uncharacterized LOC105378479	ncRNA
95515	chr17	36535101	36536700	+	0	NA	promoter-TSS (NM_001163735)	promoter-TSS (NM_001163735)	-443	NM_001163735	80179		NM_025109	ENSG00000278259	MYO19	MYOHD1	myosin XIX	protein-coding
215276	chr7	157017851	157018150	+	0	NA	Intergenic	CpG	7143	NR_038835	645249		NR_038835	ENSG00000243479	MNX1-AS1	CCAT5|MAYA	MNX1 antisense RNA 1 (head to head)	ncRNA
121786	chr19	47788401	47789300	+	0	NA	Intergenic	Intergenic	10147	NM_003009	6415		NM_003009	ENSG00000178980	SELENOW	SEPW1|selW	selenoprotein W	protein-coding
166738	chr3	121748721	121750850	+	0	NA	promoter-TSS (NM_001256486)	promoter-TSS (NM_001256486)	-18	NM_001256488	2804		NM_004487	ENSG00000173230	GOLGB1	GCP|GCP372|GOLIM1	golgin B1	protein-coding
137753	chr2	197934801	197935200	+	0	NA	intron (NM_006226, intron 1 of 5)	L1PA15|LINE|L1	130407	NM_006226	5334		NM_006226	ENSG00000115896	PLCL1	PLCE|PLCL|PLDL1|PPP1R127|PRIP	phospholipase C like 1 (inactive)	protein-coding
96480	chr17	40279101	40279930	+	0	NA	3' UTR (NM_133264, exon 8 of 8)	3' UTR (NM_133264, exon 8 of 8)	-8364	NM_001254	990		NM_001254	ENSG00000094804	CDC6	CDC18L|HsCDC18|HsCDC6|MGORS5	cell division cycle 6	protein-coding
149475	chr21	31866051	31866350	+	0	NA	Intergenic	Intergenic	-6820	NM_014586	30811		NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
92086	chr17	7558121	7559330	+	0	NA	TTS (NM_003809)	TTS (NM_003809)	433	NM_172087	8741		NM_003808	ENSG00000161955	TNFSF13	APRIL|CD256|TALL-2|TALL2|TNLG7B|TRDL-1|UNQ383/PRO715|ZTNF2	TNF superfamily member 13	protein-coding
173987	chr4	26244021	26244550	+	0	NA	intron (NM_001374401, intron 1 of 11)	(TGTATA)n|Simple_repeat|Simple_repeat	-75461	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
194603	chr6	33503271	33503430	+	0	NA	Intergenic	LTR12C|LTR|ERV1	48774	NM_152735	221504		NM_152735	ENSG00000213588	ZBTB9	ZNF919	zinc finger and BTB domain containing 9	protein-coding
191083	chr6	3732601	3732880	+	0	NA	intron (NM_183373, intron 3 of 4)	intron (NM_183373, intron 3 of 4)	18973	NM_183373	221749		NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding
6121	chr1	27347871	27348280	+	0	NA	intron (NM_032872, intron 5 of 14)	intron (NM_032872, intron 5 of 14)	6053	NM_001193308	84958		NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding
214112	chr7	143995451	143995550	+	0	NA	Intergenic	AluYd8|SINE|Alu	-8429	NM_001005281	135946		NM_001005281	ENSG00000221813	OR6B1	OR7-3|OR7-9	olfactory receptor family 6 subfamily B member 1	protein-coding
46434	chr11	128038951	128040080	+	0	NA	Intergenic	Intergenic	-169251	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
180645	chr5	17390071	17390300	+	0	NA	Intergenic	AluY|SINE|Alu	-2875	NR_033975	401177		NR_033975	ENSG00000250822	LINC02111	-	long intergenic non-protein coding RNA 2111	ncRNA
128716	chr2	61761601	61761800	+	0	NA	Intergenic	AluSp|SINE|Alu	92360	NM_001201543	84140		NM_032180	ENSG00000170264	FAM161A	RP28	FAM161 centrosomal protein A	protein-coding
97070	chr17	42382071	42382230	+	0	NA	intron (NM_001369516, intron 1 of 23)	L2b|LINE|L2	6292	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
211935	chr7	112466401	112466800	+	0	NA	intron (NR_120333, intron 7 of 11)	MER20|DNA|hAT-Charlie	-14253	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
197161	chr6	59575651	59575750	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1614254	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
67517	chr14	70986901	70987380	+	0	NA	intron (NM_001308160, intron 6 of 33)	intron (NM_001308160, intron 6 of 33)	79681	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
137654	chr2	197427701	197428230	+	0	NA	intron (NM_001005526, intron 1 of 4)	AluSg7|SINE|Alu	7063	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
149562	chr21	33215371	33216650	+	0	NA	Intergenic	Tigger4a|DNA|TcMar-Tigger	-13885	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
196406	chr6	43366421	43366880	+	0	NA	intron (NM_014345, intron 1 of 9)	AluJr|SINE|Alu	2997	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
80343	chr16	2473301	2474500	+	0	NA	exon (NM_006181, exon 6 of 6)	exon (NM_006181, exon 6 of 6)	-1227	NM_001199107	57465		NM_020705	ENSG00000162065	TBC1D24	DEE16|DFNA65|DFNB86|DOORS|EIEE16|EIM|EPRPDC|FIME|TLDC6	TBC1 domain family member 24	protein-coding
146028	chr20	47220051	47220350	+	0	NA	intron (NM_183047, intron 21 of 22)	intron (NM_183047, intron 21 of 22)	53233	NR_037410	100500814		NR_037410	ENSG00000264901	MIR3616	mir-3616	microRNA 3616	ncRNA
148744	chr21	7613921	7614950	+	0	NA	Intergenic	Intergenic	77766	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
86041	chr16	57549501	57550080	+	0	NA	intron (NM_153837, intron 1 of 11)	intron (NM_153837, intron 1 of 11)	7147	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
207202	chr7	43639351	43640780	+	0	NA	intron (NM_001371315, intron 5 of 5)	intron (NM_001371315, intron 5 of 5)	56957	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
154942	chr22	37234821	37235450	+	0	NA	intron (NM_002872, intron 2 of 6)	intron (NM_002872, intron 2 of 6)	9134	NM_002872	5880		NM_002872	ENSG00000128340	RAC2	EN-7|Gx|HSPC022|IMD73A|IMD73B|IMD73C|p21-Rac2	Rac family small GTPase 2	protein-coding
100475	chr17	61455571	61456130	+	0	NA	promoter-TSS (NM_018488)	promoter-TSS (NM_018488)	-638	NM_018488	9496		NM_018488	ENSG00000121075	TBX4	ICPPS|PAPPAS|SPS	T-box transcription factor 4	protein-coding
120584	chr19	45004671	45005000	+	0	NA	intron (NM_006509, intron 2 of 10)	AluSp|SINE|Alu	3371	NM_006509	5971		NM_006509	ENSG00000104856	RELB	I-REL|IMD53|IREL|REL-B	RELB proto-oncogene, NF-kB subunit	protein-coding
137904	chr2	200866751	200866850	+	0	NA	Intergenic	AluSg|SINE|Alu	-2142	NR_027856	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
53174	chr12	59382701	59382900	+	0	NA	Intergenic	Intergenic	-213229	NM_001270623	9194		NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding
22082	chr1	211382501	211383530	+	0	NA	intron (NR_026761, intron 1 of 5)	intron (NR_026761, intron 1 of 5)	260	NR_026761	84791		NM_032705	ENSG00000153363	LINC00467	ASAP|C1orf97	long intergenic non-protein coding RNA 467	ncRNA
35310	chr11	1029601	1029800	+	0	NA	intron (NM_005961, intron 8 of 32)	intron (NM_005961, intron 8 of 32)	7018	NM_005961	4588		NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding
37879	chr11	33897801	33898000	+	0	NA	Intergenic	Intergenic	-5824	NM_005574	4005		NM_005574	ENSG00000135363	LMO2	LMO-2|RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding
220928	chr8	108246871	108247280	+	0	NA	intron (NM_001568, intron 1 of 12)	intron (NM_001568, intron 1 of 12)	1642	NM_001568	3646		NM_001568	ENSG00000104408	EIF3E	EIF3-P48|EIF3S6|INT6|eIF3-p46	eukaryotic translation initiation factor 3 subunit E	protein-coding
234440	chrX	16869371	16871280	+	0	NA	promoter-TSS (NM_001198719)	promoter-TSS (NM_001198719)	37	NM_002893	5931		NM_002893	ENSG00000102054	RBBP7	RbAp46	RB binding protein 7, chromatin remodeling factor	protein-coding
72510	chr15	33700701	33701000	+	0	NA	intron (NM_001036, intron 41 of 103)	intron (NM_001036, intron 41 of 103)	-267647	NM_001320917	1133		NM_012125	ENSG00000184984	CHRM5	HM5	cholinergic receptor muscarinic 5	protein-coding
194704	chr6	33702301	33702750	+	0	NA	intron (NM_032340, intron 1 of 3)	intron (NM_032340, intron 1 of 3)	4397	NR_037498	100500873		NR_037498	ENSG00000266509	MIR3934	-	microRNA 3934	ncRNA
73685	chr15	44853301	44853800	+	0	NA	intron (NR_146394, intron 2 of 9)	intron (NR_146394, intron 2 of 9)	29069	NR_146393	653381		NR_146393	ENSG00000290387	SORD2P	SORD2	sorbitol dehydrogenase 2, pseudogene	pseudo
236993	chrX	101622871	101624180	+	0	NA	intron (NM_177948, intron 1 of 4)	intron (NM_177948, intron 1 of 4)	164	NM_177948	51566		NM_016607	ENSG00000102401	ARMCX3	ALEX3|GASP6|dJ545K15.2	armadillo repeat containing X-linked 3	protein-coding
209454	chr7	76457071	76457430	+	0	NA	Intergenic	Intergenic	-4405	NM_020892	113878		NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding
118159	chr19	35022551	35022880	+	0	NA	intron (NM_001320034, intron 16 of 18)	intron (NM_001320034, intron 16 of 18)	-7755	NM_199037	6324		NM_001037	ENSG00000105711	SCN1B	ATFB13|BRGDA5|DEE52|EIEE52|GEFSP1	sodium voltage-gated channel beta subunit 1	protein-coding
31457	chr10	96229521	96229800	+	0	NA	intron (NM_001258440, intron 4 of 15)	(TG)n|Simple_repeat|Simple_repeat	41856	NM_001258440	29760		NM_013314	ENSG00000095585	BLNK	AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca	B cell linker	protein-coding
119325	chr19	39935301	39935500	+	0	NA	promoter-TSS (NM_003890).2	promoter-TSS (NM_003890).2	-774	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
45833	chr11	119371701	119372230	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	-7757	NM_171997	9099		NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding
99768	chr17	51096201	51096930	+	0	NA	intron (NM_001130527, intron 1 of 29)	L1ME3Cz|LINE|L1	24303	NM_001130527	9043		NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding
178780	chr4	153465201	153468200	+	0	NA	intron (NM_015196, intron 1 of 34)	CpG	340	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
21374	chr1	205183851	205184150	+	0	NA	intron (NM_015375, intron 2 of 12)	intron (NM_015375, intron 2 of 12)	27702	NM_199462	25778		NM_015375	ENSG00000133059	DSTYK	CAKUT1|DustyPK|HDCMD38P|RHDNS1|RIP5|RIPK5|SPG23	dual serine/threonine and tyrosine protein kinase	protein-coding
3298	chr1	15345921	15346380	+	0	NA	intron (NM_052929, intron 17 of 30)	L3|LINE|CR1	-2267	NR_148919	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
124215	chr19	57103871	57104350	+	0	NA	Intergenic	Intergenic	-16031	NM_020903	57663		NM_020903	ENSG00000131864	USP29	HOM-TES-84/86	ubiquitin specific peptidase 29	protein-coding
65446	chr14	51651271	51652830	+	0	NA	promoter-TSS (NR_037676)	promoter-TSS (NR_037676)	140	NM_001267046	122786		NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
64479	chr14	24296651	24297930	+	0	NA	intron (NM_138452, intron 2 of 8)	intron (NM_138452, intron 2 of 8)	2170	NM_138452	115817		NM_138452	ENSG00000157379	DHRS1	SDR19C1	dehydrogenase/reductase 1	protein-coding
42499	chr11	70252821	70253150	+	0	NA	Intergenic	Intergenic	-17705	NM_001378006	8500		NM_003626	ENSG00000131626	PPFIA1	LIP.1|LIP1|LIPRIN	PTPRF interacting protein alpha 1	protein-coding
232477	chr9	136237971	136238130	+	0	NA	intron (NM_181701, intron 1 of 11)	LTR37B|LTR|ERV1	7762	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
102479	chr17	75736021	75736680	+	0	NA	exon (NM_001005731, exon 15 of 39)	exon (NM_001005731, exon 15 of 39)	11654	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
189492	chr5	173187471	173187730	+	0	NA	Intergenic	Charlie17b|DNA|hAT-Charlie	43069	NM_013978	662		NM_001205	ENSG00000113734	BNIP1	NIP1|SEC20|TRG-8	BCL2 interacting protein 1	protein-coding
171710	chr3	197869151	197869680	+	0	NA	intron (NM_001365715, intron 17 of 20)	intron (NM_001365715, intron 17 of 20)	78161	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
39911	chr11	62516171	62516330	+	0	NA	3' UTR (NM_001346446, exon 5 of 5)	3' UTR (NM_001346446, exon 5 of 5)	29414	NM_001346446	79026		NM_001620	ENSG00000124942	AHNAK	AHNAK1|AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding
76367	chr15	74597051	74597380	+	0	NA	3' UTR (NM_001307939, exon 9 of 9)	3' UTR (NM_001307939, exon 9 of 9)	-11157	NM_003992	1198		NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding
44226	chr11	96342901	96344050	+	0	NA	promoter-TSS (NM_032427)	promoter-TSS (NM_032427)	-280	NM_032427	84441		NM_032427	ENSG00000184384	MAML2	MAM-3|MAM2|MAM3|MLL-MAML2	mastermind like transcriptional coactivator 2	protein-coding
154024	chr22	30442071	30443500	+	0	NA	Intergenic	AluSz|SINE|Alu	10099	NR_148046	105372990		NR_148046	ENSG00000273428	LOC105372990	-	uncharacterized LOC105372990	ncRNA
60261	chr13	40598651	40598750	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	67941	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
99539	chr17	50360621	50361300	+	0	NA	non-coding (NR_110010, exon 10 of 10)	non-coding (NR_110010, exon 10 of 10)	12224	NM_016504	51264		NM_016504	ENSG00000108826	MRPL27	L27mt|bL27m	mitochondrial ribosomal protein L27	protein-coding
145559	chr20	44247101	44247500	+	0	NA	promoter-TSS (NR_046353)	promoter-TSS (NR_046353)	-8	NR_046353	78997		NM_024034	ENSG00000124194	GDAP1L1	dJ881L22.1|dJ995J12.1.1	ganglioside induced differentiation associated protein 1 like 1	protein-coding
157676	chr22	46287171	46287530	+	0	NA	intron (NM_017931, intron 10 of 13)	intron (NM_017931, intron 10 of 13)	9310	NR_024009	150384		NR_024009	ENSG00000277232	GTSE1-DT	CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6	GTSE1 divergent transcript	ncRNA
128133	chr2	48340401	48340830	+	0	NA	intron (NM_001375445, intron 3 of 7)	intron (NM_001375445, intron 3 of 7)	25933	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
105877	chr18	3248601	3250030	+	0	NA	intron (NM_006471, intron 1 of 3)	intron (NM_006471, intron 1 of 3)	1514	NM_006471	10627		NM_006471	ENSG00000101608	MYL12A	HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B	myosin light chain 12A	protein-coding
235879	chrX	51802771	51803650	+	0	NA	intron (NM_001005332, intron 1 of 12)	intron (NM_001005332, intron 1 of 12)	134	NM_001005332	9500		NM_006986	ENSG00000179222	MAGED1	DLXIN-1|NRAGE	MAGE family member D1	protein-coding
167883	chr3	135965201	135966450	+	0	NA	promoter-TSS (NM_001190447)	promoter-TSS (NM_001190447)	97	NM_001190447	5523		NM_002718	ENSG00000073711	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2 regulatory subunit B''alpha	protein-coding
40848	chr11	65045651	65046700	+	0	NA	intron (NM_005468, intron 15 of 17)	intron (NM_005468, intron 15 of 17)	4965	NM_013299	29901		NM_013299	ENSG00000168061	SAC3D1	HSU79266|SHD1	SAC3 domain containing 1	protein-coding
79656	chr16	1196051	1196380	+	0	NA	intron (NM_021098, intron 5 of 34)	intron (NM_021098, intron 5 of 34)	29053	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
112850	chr19	7543521	7544050	+	0	NA	intron (NM_006702, intron 16 of 34)	intron (NM_006702, intron 16 of 34)	8068	NM_001166114	10908		NM_006702	ENSG00000032444	PNPLA6	BNHS|LNMS|NTE|NTEMND|OMCS|SPG39|iPLA2delta|sws	patatin like phospholipase domain containing 6	protein-coding
217048	chr8	23287601	23288800	+	0	NA	promoter-TSS (NM_001136108)	promoter-TSS (NM_001136108)	92	NM_001136108	203069		NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
63150	chr13	113593871	113594230	+	0	NA	intron (NR_026580, intron 2 of 10)	intron (NR_026580, intron 2 of 10)	9297	NM_007111	7027		NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding
164185	chr3	56813601	56814150	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-11926	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
225489	chr9	35644701	35644900	+	0	NA	Intergenic	Intergenic	-1470	NR_135130	101926948		NR_135130		LOC101926948	-	uncharacterized LOC101926948	ncRNA
5589	chr1	26028051	26028350	+	0	NA	intron (NM_004455, intron 1 of 10)	MIR3|SINE|MIR	6425	NM_004455	2134		NM_004455	ENSG00000158008	EXTL1	EXTL	exostosin like glycosyltransferase 1	protein-coding
161233	chr3	39208321	39208780	+	0	NA	Intergenic	MER34A1|LTR|ERV1	-15955	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
34244	chr10	130174371	130174530	+	0	NA	intron (NM_001199868, intron 8 of 11)	MER58A|DNA|hAT-Charlie	38041	NM_001321980	10539		NM_006541	ENSG00000108010	GLRX3	GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3	glutaredoxin 3	protein-coding
11549	chr1	91019571	91020000	+	0	NA	intron (NM_032186, intron 1 of 3)	AluSc|SINE|Alu	1723	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
15541	chr1	150536021	150536280	+	0	NA	Intergenic	L2b|LINE|L2	-13258	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
198319	chr6	100879301	100879500	+	0	NA	intron (NM_001284271, intron 1 of 12)	MER21B|LTR|ERVL	1929	NM_006828	10973		NM_006828	ENSG00000112249	ASCC3	ASC1p200|HELIC1|MRT81|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
229397	chr9	121190521	121191000	+	0	NA	intron (NM_016322, intron 3 of 7)	intron (NM_016322, intron 3 of 7)	-10723	NM_001353053	2934		NM_000177	ENSG00000148180	GSN	ADF|AGEL	gelsolin	protein-coding
76678	chr15	75722471	75722930	+	0	NA	Intergenic	Intergenic	-1341	NM_175881	161753		NM_175881	ENSG00000182950	CIMAP1C	ODF3L1	ciliary microtubule associated protein 1C	protein-coding
185930	chr5	132906071	132906230	+	0	NA	intron (NM_014423, intron 5 of 20)	L1MB7|LINE|L1	32482	NM_052971	116842		NM_052971	ENSG00000164406	LEAP2	LEAP-2	liver enriched antimicrobial peptide 2	protein-coding
169222	chr3	157126601	157127050	+	0	NA	Intergenic	Intergenic	-3823	NR_034007	339894		NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA
60592	chr13	41974501	41975000	+	0	NA	intron (NR_039974, intron 2 of 3)	intron (NR_039974, intron 2 of 3)	13581	NR_039974	100507240		NR_039974	ENSG00000278338	VWA8-AS1	-	VWA8 antisense RNA 1 (head to head)	ncRNA
40141	chr11	62845471	62845830	+	0	NA	Intergenic	AluSx|SINE|Alu	-3841	NM_001369451	54663		NM_018093	ENSG00000133316	WDR74	Nsa1	WD repeat domain 74	protein-coding
168932	chr3	152359501	152360550	+	0	NA	intron (NM_001376837, intron 2 of 9)	intron (NM_001376837, intron 2 of 9)	-19035	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
172494	chr4	2247851	2248100	+	0	NA	3' UTR (NM_006454, exon 6 of 6)	3' UTR (NM_006454, exon 6 of 6)	2181	NR_039964	100616358		NR_039964	ENSG00000284276	MIR4800	mir-4800	microRNA 4800	ncRNA
222887	chr8	142779151	142779450	+	0	NA	Intergenic	L1MEc|LINE|L1	-1428	NM_023946	111188157		NM_023946	ENSG00000284505	LYNX1-SLURP2	-	LYNX1-SLURP2 readthrough	protein-coding
21	chr1	35451	35750	+	0	NA	intron (NR_026822, intron 1 of 2)	intron (NR_026822, intron 1 of 2)	481	NR_026822	654835		NR_026822	ENSG00000218839	FAM138C	F379	family with sequence similarity 138 member C	ncRNA
136392	chr2	176130171	176130930	+	0	NA	exon (NM_001199746, exon 1 of 2)	exon (NM_001199746, exon 1 of 2)	845	NM_001199747	3234		NM_019558	ENSG00000175879	HOXD8	HOX4|HOX4E|HOX5.4	homeobox D8	protein-coding
182649	chr5	67167971	67168300	+	0	NA	3' UTR (NM_001290226, exon 27 of 27)	3' UTR (NM_001290226, exon 27 of 27)	28664	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
191389	chr6	7726871	7727680	+	0	NA	exon (NM_001718, exon 1 of 7)	exon (NM_001718, exon 1 of 7)	1176	NM_001718	654		NM_001718	ENSG00000153162	BMP6	IO|VGR|VGR1	bone morphogenetic protein 6	protein-coding
18816	chr1	167649051	167649650	+	0	NA	intron (NM_001322923, intron 1 of 5)	MamRep1879|DNA|hAT-Tip100?	19118	NM_001322924	92241		NM_052862	ENSG00000198771	RCSD1	CAPZIP|MK2S4	RCSD domain containing 1	protein-coding
171567	chr3	196944851	196945550	+	0	NA	Intergenic	AluJo|SINE|Alu	2526	NM_001355243	152217		NM_138487	ENSG00000270170	NCBP2AS2	HIAR|KRASIM|NCBP2-AS2	NCBP2 antisense 2 (head to head)	protein-coding
149798	chr21	34967421	34968080	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	71676	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
159468	chr3	14135201	14136000	+	0	NA	intron (NM_024334, intron 9 of 11)	intron (NM_024334, intron 9 of 11)	10548	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
605	chr1	1303171	1303900	+	0	NA	intron (NM_030649, intron 2 of 23)	intron (NM_030649, intron 2 of 23)	1277	NR_145806	109623456		NR_145806		SNORD167	-	small nucleolar RNA, C/D box 167	snoRNA
177002	chr4	105471471	105472130	+	0	NA	intron (NM_176866, intron 1 of 7)	intron (NM_176866, intron 1 of 7)	2262	NM_176869	27068		NM_006903	ENSG00000138777	PPA2	HSPC124|SCFAI|SCFI|SID6-306	inorganic pyrophosphatase 2	protein-coding
212237	chr7	121366671	121367080	+	0	NA	intron (NM_001040020, intron 5 of 9)	intron (NM_001040020, intron 5 of 9)	29433	NM_014888	10447		NM_014888	ENSG00000196937	FAM3C	GS3786|ILEI	FAM3 metabolism regulating signaling molecule C	protein-coding
42563	chr11	71908551	71908850	+	0	NA	intron (NM_001375847, intron 5 of 5)	HERVE-int|LTR|ERV1	19759	NM_001375848	100133315		NM_001375847	ENSG00000254469	XNDC1N	-	XRCC1 N-terminal domain containing 1, N-terminal like	protein-coding
70307	chr14	101814121	101814480	+	0	NA	intron (NM_178587, intron 1 of 11)	intron (NM_178587, intron 1 of 11)	4437	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
25927	chr10	11328551	11328930	+	0	NA	intron (NM_001326330, intron 12 of 12)	intron (NM_001326330, intron 12 of 12)	15934	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
66201	chr14	61279021	61279280	+	0	NA	3' UTR (NM_001017970, exon 1 of 1)	3' UTR (NM_001017970, exon 1 of 1)	2188	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
230495	chr9	128246851	128247400	+	0	NA	intron (NM_001374269, intron 16 of 21)	intron (NM_001374269, intron 16 of 21)	-2095	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
103984	chr17	80013721	80013800	+	0	NA	intron (NM_019020, intron 1 of 11)	intron (NM_019020, intron 1 of 11)	22112	NM_019020	125058		NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding
191555	chr6	11711501	11712280	+	0	NA	Intergenic	Intergenic	66913	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
138637	chr2	210224851	210225230	+	0	NA	intron (NM_001608, intron 1 of 10)	CpG	407	NM_001608	33		NM_001608	ENSG00000115361	ACADL	ACAD4|LCAD	acyl-CoA dehydrogenase long chain	protein-coding
208639	chr7	72997421	72998300	+	0	NA	non-coding (NR_040582, exon 9 of 9)	non-coding (NR_040582, exon 9 of 9)	8083	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
181291	chr5	39599821	39600080	+	0	NA	Intergenic	Intergenic	79519	NR_104632	101926940		NR_104632	ENSG00000271334	LINC02104	-	long intergenic non-protein coding RNA 2104	ncRNA
146137	chr20	48657051	48657150	+	0	NA	exon (NM_020820, exon 18 of 40)	exon (NM_020820, exon 18 of 40)	170899	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
223069	chr8	143396901	143397300	+	0	NA	Intergenic	Intergenic	-20579	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
163163	chr3	50164871	50165030	+	0	NA	intron (NM_001318798, intron 2 of 17)	intron (NM_001318798, intron 2 of 17)	5931	NM_001318800	6405		NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding
214533	chr7	150514521	150515280	+	0	NA	promoter-TSS (NM_153236)	promoter-TSS (NM_153236)	28	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
203528	chr7	815271	817700	+	0	NA	promoter-TSS (NM_001367665)	promoter-TSS (NM_001367665)	-158	NM_001367690	23353		NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
233282	chr9	137310401	137311180	+	0	NA	intron (NM_017820, intron 19 of 21)	intron (NM_017820, intron 19 of 21)	-8519	NM_001004354	441478		NM_001004354	ENSG00000198435	NRARP	-	NOTCH regulated ankyrin repeat protein	protein-coding
31610	chr10	97369951	97370050	+	0	NA	intron (NM_015179, intron 24 of 33)	intron (NM_015179, intron 24 of 33)	31340	NM_001284337	23223		NM_015179	ENSG00000052749	RRP12	KIAA0690	ribosomal RNA processing 12 homolog	protein-coding
106973	chr18	31945551	31945850	+	0	NA	Intergenic	Intergenic	-2572	NM_014939	22878		NM_014939	ENSG00000153339	TRAPPC8	GSG1|HsT2706|KIAA1012|TRS85	trafficking protein particle complex subunit 8	protein-coding
184946	chr5	113019251	113019550	+	0	NA	non-coding (NR_038352, exon 9 of 9)	non-coding (NR_038352, exon 9 of 9)	42602	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
233913	chrX	1657301	1658730	+	0	NA	Intergenic	Intergenic	42882	NM_001171039	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
28654	chr10	59889101	59889500	+	0	NA	intron (NM_005436, intron 1 of 8)	intron (NM_005436, intron 1 of 8)	17256	NM_005436	8030		NM_005436	ENSG00000108091	CCDC6	D10S170|H4|PTC|PTC1|TPC|TST1	coiled-coil domain containing 6	protein-coding
36837	chr11	10295171	10295830	+	0	NA	Intergenic	Intergenic	-1293	NM_030962	81846		NM_030962	ENSG00000133812	SBF2	CMT4B2|DENND7B|MTMR13	SET binding factor 2	protein-coding
52007	chr12	53974401	53975100	+	0	NA	intron (NM_014212, intron 1 of 1)	CpG	206	NR_047517	100124700		NR_003716	ENSG00000228630	HOTAIR	HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072	HOX transcript antisense RNA	ncRNA
36014	chr11	2904471	2904630	+	0	NA	promoter-TSS (NR_169304)	promoter-TSS (NR_169304)	-975	NR_169304	5003		NM_007105	ENSG00000254827	SLC22A18AS	BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B	SLC22A18 antisense RNA	ncRNA
100798	chr17	64036721	64036980	+	0	NA	Intergenic	LTR47A|LTR|ERVL	-16216	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
201737	chr6	149897251	149897780	+	0	NA	intron (NR_045127, intron 2 of 2)	intron (NR_045127, intron 2 of 2)	-1456	NM_001243328	135250		NM_139165	ENSG00000164520	RAET1E	LETAL|N2DL-4|NKG2DL4|RAET1E2|RL-4|ULBP4|bA350J20.7	retinoic acid early transcript 1E	protein-coding
123962	chr19	55404871	55405050	+	0	NA	intron (NM_014501, intron 2 of 3)	AluSp|SINE|Alu	-2303	NR_145781	109623451		NR_145781		SNORD157	-	small nucleolar RNA, C/D box 157	snoRNA
229073	chr9	114354771	114355430	+	0	NA	intron (NM_001317952, intron 13 of 20)	AluSz6|SINE|Alu	25231	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
184690	chr5	108727751	108728900	+	0	NA	promoter-TSS (NR_046368)	promoter-TSS (NR_046368)	-64	NR_046368	100652853		NR_046368		LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
131739	chr2	98447071	98447250	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	1150	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
81638	chr16	10895271	10895680	+	0	NA	intron (NM_001379334, intron 2 of 19)	intron (NM_001379334, intron 2 of 19)	16508	NM_001379334	4261		NM_000246	ENSG00000179583	CIITA	C2TA|CIITAIV|MHC2TA|NLRA	class II major histocompatibility complex transactivator	protein-coding
7887	chr1	36466371	36466950	+	0	NA	exon (NM_000760, exon 17 of 17)	exon (NM_000760, exon 17 of 17)	-2276	NM_031280	64960		NM_031280	ENSG00000116898	MRPS15	DC37|MPR-S15|RPMS15|S15mt|uS15m	mitochondrial ribosomal protein S15	protein-coding
169179	chr3	156688001	156688430	+	0	NA	intron (NM_001184718, intron 2 of 5)	AluJb|SINE|Alu	11551	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
17503	chr1	156739321	156739730	+	0	NA	intron (NM_024540, intron 1 of 5)	MIRb|SINE|MIR	1563	NM_024540	79590		NM_024540	ENSG00000143314	MRPL24	L24mt|MRP-L18|MRP-L24|uL24m	mitochondrial ribosomal protein L24	protein-coding
29568	chr10	71684371	71684530	+	0	NA	intron (NM_001171931, intron 17 of 24)	intron (NM_001171931, intron 17 of 24)	35328	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
161421	chr3	41419221	41419700	+	0	NA	intron (NM_017886, intron 34 of 36)	L2a|LINE|L2	219955	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
145385	chr20	41242801	41243000	+	0	NA	intron (NM_001384323, intron 3 of 7)	intron (NM_001384323, intron 3 of 7)	29356	NM_001384324	23051		NM_015035	ENSG00000174306	ZHX3	TIX1	zinc fingers and homeoboxes 3	protein-coding
221048	chr8	116759621	116759880	+	0	NA	Intergenic	Intergenic	-3927	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
170051	chr3	182797401	182797600	+	0	NA	intron (NM_014616, intron 1 of 29)	AluSx1|SINE|Alu	3996	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
29739	chr10	72122021	72122530	+	0	NA	intron (NM_001369102, intron 10 of 11)	AluSg|SINE|Alu	-33243	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
112034	chr19	5123771	5124330	+	0	NA	intron (NM_015015, intron 11 of 22)	intron (NM_015015, intron 11 of 22)	154937	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
147695	chr20	62322751	62323050	+	0	NA	intron (NM_005560, intron 45 of 79)	intron (NM_005560, intron 45 of 79)	9657	NR_039915	100616340		NR_039915	ENSG00000284074	MIR4758	-	microRNA 4758	ncRNA
180308	chr5	5492301	5492880	+	0	NA	Intergenic	Intergenic	69913	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
37167	chr11	13923721	13924650	+	0	NA	intron (NR_135052, intron 1 of 1)	intron (NR_135052, intron 1 of 1)	678	NR_135052	101928132		NR_135052	ENSG00000254438	LINC02683	-	long intergenic non-protein coding RNA 2683	ncRNA
41854	chr11	67160771	67161650	+	0	NA	intron (NM_012308, intron 2 of 20)	intron (NM_012308, intron 2 of 20)	41947	NM_012308	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
112301	chr19	5873771	5873930	+	0	NA	Intergenic	Intergenic	-3310	NM_002034	2527		NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding
122354	chr19	49335121	49336200	+	0	NA	intron (NM_001774, intron 1 of 7)	intron (NM_001774, intron 1 of 7)	254	NM_001040031	951		NM_001774	ENSG00000104894	CD37	GP52-40|TSPAN26	CD37 molecule	protein-coding
8547	chr1	41237821	41238080	+	0	NA	intron (NM_012236, intron 1 of 14)	intron (NM_012236, intron 1 of 14)	4356	NM_001350667	22955		NM_012236	ENSG00000010803	SCMH1	Scml3	Scm polycomb group protein homolog 1	protein-coding
61098	chr13	48428101	48428300	+	0	NA	intron (NM_005767, intron 1 of 6)	MSTB|LTR|ERVL-MaLR	-1292	NM_001377317	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
79899	chr16	1609101	1609630	+	0	NA	intron (NM_014714, intron 2 of 30)	intron (NM_014714, intron 2 of 30)	2707	NM_014714	9742		NM_014714	ENSG00000187535	IFT140	MZSDS|RP80|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114	intraflagellar transport 140	protein-coding
101105	chr17	64987921	64988180	+	0	NA	Intergenic	AluSx3|SINE|Alu	-12465	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
60796	chr13	45325751	45326330	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	10407	NR_145985	109616966		NR_145726	ENSG00000253051	SNORA31B	-	small nucleolar RNA, H/ACA box 31B	snoRNA
144489	chr20	35653021	35653280	+	0	NA	exon (NM_152838, exon 3 of 3)	exon (NM_152838, exon 3 of 3)	759	NM_003915	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
235436	chrX	45850251	45850700	+	0	NA	intron (NR_125365, intron 1 of 2)	intron (NR_125365, intron 1 of 2)	1015	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
175874	chr4	80033751	80033850	+	0	NA	intron (NM_001145794, intron 8 of 15)	intron (NM_001145794, intron 8 of 15)	39429	NM_001286781	118429		NM_058172	ENSG00000163297	ANTXR2	CMG-2|CMG2|HFS|ISH|JHF	ANTXR cell adhesion molecule 2	protein-coding
70936	chr14	104461401	104462050	+	0	NA	Intergenic	CpG	-118039	NM_001286399	400258		NM_001008404	ENSG00000184601	C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding
134200	chr2	134459301	134459700	+	0	NA	intron (NM_030923, intron 6 of 7)	intron (NM_030923, intron 6 of 7)	205428	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
208701	chr7	73284071	73284430	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	24576	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
167259	chr3	128595421	128596200	+	0	NA	Intergenic	Intergenic	-19724	NR_125802	23434		NM_007354	ENSG00000198685	LINC01565	C3orf27|GR6	long intergenic non-protein coding RNA 1565	ncRNA
222702	chr8	141300721	141301300	+	0	NA	intron (NM_001286646, intron 1 of 8)	intron (NM_001286646, intron 1 of 8)	7278	NM_001286646	57210		NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding
62344	chr13	99176551	99177530	+	0	NA	Intergenic	Intergenic	23715	NR_036532	100289373		NR_036531	ENSG00000228889	UBAC2-AS1	-	UBAC2 antisense RNA 1	ncRNA
117786	chr19	29830921	29831850	+	0	NA	Intergenic	Intergenic	19394	NM_001322262	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
28333	chr10	46556271	46557350	+	0	NA	promoter-TSS (NM_014696)	promoter-TSS (NM_014696)	-152	NM_001385301	9721		NM_014696	ENSG00000204175	GPRIN2	GRIN2|KIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding
100766	chr17	63987351	63987650	+	0	NA	Intergenic	Intergenic	-10851	NM_001191029	92340		NM_001164257	ENSG00000224383	PRR29	C17orf72	proline rich 29	protein-coding
176123	chr4	83099301	83099500	+	0	NA	intron (NM_016619, intron 3 of 4)	Tigger1|DNA|TcMar-Tigger	10489	NM_001130716	51316		NM_016619	ENSG00000145287	PLAC8	C15|DGIC|PNAS-144|onzin	placenta associated 8	protein-coding
229379	chr9	121106801	121107300	+	0	NA	intron (NM_007018, intron 7 of 43)	intron (NM_007018, intron 7 of 43)	-14720	NR_163191	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
39152	chr11	57249171	57249750	+	0	NA	Intergenic	Intergenic	-12007	NM_005161	187		NM_005161	ENSG00000134817	APLNR	AGTRL1|APJ|APJR|HG11	apelin receptor	protein-coding
8845	chr1	43358271	43359900	+	0	NA	intron (NM_001255, intron 1 of 10)	CpG	104	NM_001255	991		NM_001255	ENSG00000117399	CDC20	CDC20A|OOMD14|OZEMA14|bA276H19.3|p55CDC	cell division cycle 20	protein-coding
90881	chr17	2383751	2383850	+	0	NA	TTS (NM_020310)	TTS (NM_020310)	17260	NM_020310	4335		NM_020310	ENSG00000070444	MNT	MAD6|MXD6|ROX|bHLHd3|lncRNA-HAL	MAX network transcriptional repressor	protein-coding
121582	chr19	47284171	47284680	+	0	NA	Intergenic	Intergenic	9540	NM_178511	255783		NM_178511	ENSG00000257704	INAFM1	PRR24	InaF motif containing 1	protein-coding
193881	chr6	31582061	31583450	+	0	NA	promoter-TSS (NM_009588).7	promoter-TSS (NM_009588).7	-330	NM_009588	4050		NM_002341	ENSG00000227507	LTB	TNFC|TNFSF3|TNLG1C|p33	lymphotoxin beta	protein-coding
7585	chr1	35183101	35183750	+	0	NA	3' UTR (NM_005066, exon 10 of 10)	3' UTR (NM_005066, exon 10 of 10)	9720	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
102836	chr17	76469221	76469800	+	0	NA	intron (NR_110548, intron 3 of 3)	intron (NR_110548, intron 3 of 3)	1907	NR_110548	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
180971	chr5	35774001	35774430	+	0	NA	intron (NM_024867, intron 28 of 36)	intron (NM_024867, intron 28 of 36)	-82676	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
38468	chr11	45795601	45795800	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-8372	NM_001145266	55343		NM_018389	ENSG00000181830	SLC35C1	CDG2C|FUCT1	solute carrier family 35 member C1	protein-coding
131865	chr2	98706371	98706530	+	0	NA	intron (NM_012214, intron 2 of 15)	AluSc|SINE|Alu	24682	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
195121	chr6	35666501	35666700	+	0	NA	intron (NM_001145775, intron 2 of 11)	intron (NM_001145775, intron 2 of 11)	-1811	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
227935	chr9	94352251	94352350	+	0	NA	intron (NR_033937, intron 2 of 2)	MER41B|LTR|ERV1	19824	NR_033937	100132077		NR_033937		LOC100132077	-	uncharacterized LOC100132077	ncRNA
126647	chr2	28898001	28898600	+	0	NA	intron (NM_015131, intron 1 of 17)	intron (NM_015131, intron 1 of 17)	3633	NM_015131	23160		NM_015131	ENSG00000163811	WDR43	NET12|UTP5	WD repeat domain 43	protein-coding
38100	chr11	35215701	35216150	+	0	NA	intron (NM_001202557, intron 6 of 8)	MADE2|DNA|TcMar-Mariner	52975	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
59696	chr13	29565051	29565550	+	0	NA	intron (NM_003045, intron 1 of 12)	(TACAA)n|Simple_repeat|Simple_repeat	30388	NM_003045	6541		NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding
90188	chr17	384101	384300	+	0	NA	Intergenic	Intergenic	-26125	NM_001013672	400566		NM_001013672	ENSG00000187624	LIAT1	C17orf97|CK20	ligand of ATE1	protein-coding
212010	chr7	114889151	114889250	+	0	NA	Intergenic	(CCTT)n|Simple_repeat|Simple_repeat	-32954	NM_199072	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
83759	chr16	28709601	28709800	+	0	NA	intron (NM_001199142, intron 1 of 20)	AluSq2|SINE|Alu	-1717	NM_001037808	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
102511	chr17	75782001	75782330	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2386	NM_005324	3021		NM_005324	ENSG00000132475	H3-3B	BRYLIB2|H3-3A|H3.3B|H3F3B	H3.3 histone B	protein-coding
133312	chr2	113876501	113877180	+	0	NA	intron (NR_110174, intron 1 of 4)	intron (NR_110174, intron 1 of 4)	-13094	NR_102318	10096		NM_005721	ENSG00000115091	ACTR3	ARP3	actin related protein 3	protein-coding
128512	chr2	60553221	60554450	+	0	NA	promoter-TSS (NM_138559)	promoter-TSS (NM_138559)	-181	NM_022893	53335		NM_018014	ENSG00000119866	BCL11A	CTIP1|DILOS|EVI9|HBFQTL5|SMARCM1|ZNF856	BCL11 transcription factor A	protein-coding
11287	chr1	89207351	89207450	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-8458	NM_052941	115361		NM_052941	ENSG00000162654	GBP4	Mpa2	guanylate binding protein 4	protein-coding
44514	chr11	107563321	107564280	+	0	NA	intron (NR_165422, intron 1 of 10)	intron (NR_165422, intron 1 of 10)	1935	NM_138775	91801		NM_138775	ENSG00000137760	ALKBH8	ABH8|MRT71|TRM9|TRMT9|TRMT9A	alkB homolog 8, tRNA methyltransferase	protein-coding
107442	chr18	46251821	46252250	+	0	NA	intron (NM_145055, intron 3 of 4)	AluSx|SINE|Alu	78001	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
206372	chr7	30598301	30598500	+	0	NA	intron (NM_002047, intron 1 of 16)	AluSx1|SINE|Alu	3522	NM_002047	2617		NM_002047	ENSG00000106105	GARS1	CMT2D|DSMAV|GARS|GlyRS|HMN5|HMN5A|HMND5|SMAD1|SMAJI	glycyl-tRNA synthetase 1	protein-coding
159837	chr3	16502321	16502580	+	0	NA	intron (NM_015150, intron 1 of 9)	MLT1F|LTR|ERVL-MaLR	11249	NM_015150	23180		NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
112978	chr19	7866801	7867550	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	7215	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
3353	chr1	15526301	15527830	+	0	NA	intron (NM_001287811, intron 1 of 13)	CpG	217	NM_015291	23341		NM_015291	ENSG00000116138	DNAJC16	ERdj8	DnaJ heat shock protein family (Hsp40) member C16	protein-coding
97825	chr17	44898551	44900280	+	0	NA	promoter-TSS (NM_001258353)	promoter-TSS (NM_001258353)	30	NM_004247	9343		NM_004247	ENSG00000108883	EFTUD2	MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD	elongation factor Tu GTP binding domain containing 2	protein-coding
89944	chr16	89741171	89742000	+	0	NA	TTS (NM_152287)	TTS (NM_152287)	20048	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
84211	chr16	29897071	29897230	+	0	NA	intron (NM_001243333, intron 1 of 16)	intron (NM_001243333, intron 1 of 16)	2114	NM_001243333	26470		NM_012410	ENSG00000174938	SEZ6L2	BSRPA|PSK-1	seizure related 6 homolog like 2	protein-coding
74036	chr15	52262821	52263080	+	0	NA	intron (NM_018728, intron 9 of 40)	MLT1A|LTR|ERVL-MaLR	14250	NR_031670	100302202		NR_031670	ENSG00000221052	MIR1266	MIRN1266|hsa-mir-1266|mir-1266	microRNA 1266	ncRNA
25715	chr10	9004321	9005000	+	0	NA	Intergenic	Intergenic	106671	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
223363	chr8	143874301	143874500	+	0	NA	intron (NM_031308, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	4067	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
238563	chrX	153803101	153803300	+	0	NA	3' UTR (NM_001303515, exon 8 of 8)	3' UTR (NM_001303515, exon 8 of 8)	8532	NM_006280	6748		NM_006280	ENSG00000180879	SSR4	CDG1Y|TRAPD	signal sequence receptor subunit 4	protein-coding
149766	chr21	34801121	34802250	+	0	NA	intron (NM_001754, intron 7 of 8)	intron (NM_001754, intron 7 of 8)	55860	NR_038886	100506385		NR_038885	ENSG00000234380	LINC01426	lincRNA-uc002yug.2	long intergenic non-protein coding RNA 1426	ncRNA
101564	chr17	68039321	68040450	+	0	NA	intron (NM_002266, intron 3 of 10)	AluSp|SINE|Alu	3925	NM_001320611	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
159496	chr3	14216351	14216800	+	0	NA	Intergenic	Intergenic	37758	NM_014463	27258		NM_014463	ENSG00000170860	LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
119416	chr19	40276571	40276730	+	0	NA	intron (NM_001243027, intron 1 of 13)	AluSg7|SINE|Alu	5991	NR_030371	693226		NR_030371	ENSG00000207631	MIR641	MIRN641|hsa-mir-641|mir-641	microRNA 641	ncRNA
232499	chr9	136261801	136262000	+	0	NA	intron (NM_001378188, intron 19 of 25)	intron (NM_001378188, intron 19 of 25)	-16088	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
102497	chr17	75759501	75760050	+	0	NA	intron (NM_001381985, intron 5 of 8)	intron (NM_001381985, intron 5 of 8)	5417	NM_001381985	2584		NM_000154	ENSG00000108479	GALK1	GALK|GK1|HEL-S-19	galactokinase 1	protein-coding
25674	chr10	8404371	8405530	+	0	NA	Intergenic	Intergenic	-136645	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
1758	chr1	6016301	6016500	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	-9933	NM_172130	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
187672	chr5	143219571	143219730	+	0	NA	intron (NR_146198, intron 22 of 22)	intron (NR_146198, intron 22 of 22)	27150	NR_046816	100874372		NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
58263	chr12	128819351	128819450	+	0	NA	intron (NM_145648, intron 1 of 7)	AluSx|SINE|Alu	4558	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
131601	chr2	96874301	96875230	+	0	NA	Intergenic	Intergenic	-4685	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
134081	chr2	131521021	131521280	+	0	NA	non-coding (NR_026922, exon 18 of 18)	non-coding (NR_026922, exon 18 of 18)	-6525	NM_001258305	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
90723	chr17	1967151	1967450	+	0	NA	intron (NM_178568, intron 1 of 1)	MER102b|DNA|hAT-Charlie	-50416	NR_135642	105371485		NR_135642	ENSG00000228133	LOC105371485	-	uncharacterized LOC105371485	ncRNA
51580	chr12	52628471	52628830	+	0	NA	Intergenic	Intergenic	-10091	NM_175068	319101		NM_175068	ENSG00000186049	KRT73	CK-73|IRT6IRS3|K6IRS3|K73|KRT6IRS3	keratin 73	protein-coding
224559	chr9	19408581	19409980	+	0	NA	intron (NM_001010887, intron 1 of 5)	CpG	271	NM_001010887	340485		NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding
65827	chr14	54891601	54892130	+	0	NA	intron (NM_001024024, intron 1 of 6)	MER44C|DNA|TcMar-Tigger	10959	NM_001024024	2643		NM_000161	ENSG00000131979	GCH1	DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B	GTP cyclohydrolase 1	protein-coding
105899	chr18	3305001	3305980	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	42771	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
235897	chrX	52958051	52959180	+	0	NA	promoter-TSS (NM_001321188)	promoter-TSS (NM_001321188)	-44	NM_001377062	29057		NM_014138	ENSG00000268350	FAM156A	PRO0659|TMEM29	family with sequence similarity 156 member A	protein-coding
57172	chr12	121424671	121424830	+	0	NA	TTS (NM_001256858)	TTS (NM_001256858)	19602	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
131951	chr2	99349221	99349480	+	0	NA	intron (NM_015904, intron 1 of 23)	intron (NM_015904, intron 1 of 23)	11961	NM_015904	9669		NM_015904	ENSG00000158417	EIF5B	IF2	eukaryotic translation initiation factor 5B	protein-coding
114667	chr19	13064071	13064230	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	38708	NM_005583	4066		NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1 basic helix-loop-helix family member	protein-coding
53921	chr12	71681551	71681850	+	0	NA	Intergenic	Intergenic	-4382	NM_018279	55266		NM_018279	ENSG00000139291	TMEM19	-	transmembrane protein 19	protein-coding
22553	chr1	222488171	222488630	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	59704	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
120262	chr19	42541701	42541930	+	0	NA	intron (NR_073180, intron 2 of 2)	intron (NR_073180, intron 2 of 2)	-13334	NM_001184813	634		NM_001712	ENSG00000079385	CEACAM1	BGP|BGP1|BGPI	CEA cell adhesion molecule 1	protein-coding
171548	chr3	196811051	196811350	+	0	NA	intron (NM_002577, intron 8 of 14)	intron (NM_002577, intron 8 of 14)	-56656	NM_001308045	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
210504	chr7	100180401	100181280	+	0	NA	intron (NM_012447, intron 2 of 33)	intron (NM_012447, intron 2 of 33)	2922	NM_001282718	10734		NM_012447	ENSG00000066923	STAG3	SA3|SPGF61	STAG3 cohesin complex component	protein-coding
220551	chr8	100709371	100709880	+	0	NA	exon (NM_002568, exon 8 of 15)	exon (NM_002568, exon 8 of 15)	-6601	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
9497	chr1	51246501	51246700	+	0	NA	intron (NM_014372, intron 1 of 2)	AluJo|SINE|Alu	10327	NM_014372	26994		NM_014372	ENSG00000123091	RNF11	CGI-123|SID1669	ring finger protein 11	protein-coding
123134	chr19	52027771	52028880	+	0	NA	promoter-TSS (NM_025040)	promoter-TSS (NM_025040)	54	NM_025040	80110		NM_025040	ENSG00000142556	ZNF614	-	zinc finger protein 614	protein-coding
80384	chr16	2540021	2542050	+	0	NA	intron (NM_031268, intron 1 of 10)	intron (NM_031268, intron 1 of 10)	3014	NM_002613	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
202206	chr6	156777801	156778600	+	0	NA	exon (NM_001374820, exon 1 of 20)	exon (NM_001374820, exon 1 of 20)	318	NR_163974	115308161		NR_163974	ENSG00000271551	LOC115308161	-	uncharacterized LOC115308161	ncRNA
163310	chr3	50355001	50355650	+	0	NA	3' UTR (NM_007024, exon 2 of 2)	3' UTR (NM_007024, exon 2 of 2)	4196	NM_007024	11070		NM_007024	ENSG00000126062	TMEM115	PL6	transmembrane protein 115	protein-coding
149284	chr21	27701151	27701330	+	0	NA	Intergenic	Intergenic	-21139	NR_024357	54088		NR_024357	ENSG00000225298	LINC00113	C21orf23|NCRNA00113|SLERCC	long intergenic non-protein coding RNA 113	ncRNA
237681	chrX	124355801	124356230	+	0	NA	intron (NM_002351, intron 1 of 3)	L1PA5|LINE|L1	9452	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
3420	chr1	15831471	15831830	+	0	NA	Intergenic	AluY|SINE|Alu	-16057	NM_015001	23013		NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RATARS|RBM15C|SHARP	spen family transcriptional repressor	protein-coding
100330	chr17	59850221	59850480	+	0	NA	Intergenic	AluYk4|SINE|Alu	9084	NR_029493	406991		NR_029493	ENSG00000284190	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
44135	chr11	96123051	96123600	+	0	NA	intron (NM_032427, intron 1 of 4)	L2b|LINE|L2	-199218	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
176770	chr4	102447301	102447900	+	0	NA	intron (NR_136202, intron 2 of 4)	intron (NR_136202, intron 2 of 4)	-53759	NM_003998	4790		NM_003998	ENSG00000109320	NFKB1	CVID12|EBP-1|KBF1|NF-kB|NF-kB1|NF-kappa-B1|NF-kappaB|NF-kappabeta|NFKB-p105|NFKB-p50|NFkappaB	nuclear factor kappa B subunit 1	protein-coding
79525	chr16	810671	811030	+	0	NA	intron (NM_001013638, intron 2 of 2)	intron (NM_001013638, intron 2 of 2)	5407	NM_001013638	388199		NM_001013638		PRR25	gs64	proline rich 25	unknown
88692	chr16	85800101	85800930	+	0	NA	promoter-TSS (NM_001142288)	promoter-TSS (NM_001142288)	820	NM_001861	1327		NM_001861	ENSG00000131143	COX4I1	COX IV-1|COX4|COX4-1|COXIV|COXIV-1|MC4DN16	cytochrome c oxidase subunit 4I1	protein-coding
179573	chr4	185225501	185225700	+	0	NA	intron (NM_001378032, intron 1 of 19)	intron (NM_001378032, intron 1 of 19)	16043	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
235391	chrX	45071921	45072600	+	0	NA	intron (NM_001291416, intron 17 of 28)	intron (NM_001291416, intron 17 of 28)	128616	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
165058	chr3	71450151	71450450	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	91789	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
234830	chrX	24343821	24343900	+	0	NA	Intergenic	MER57B1|LTR|ERV1	-18823	NM_001136234	100130302		NM_001136234	ENSG00000223731	SUPT20HL1	FAM48B1|SPT20L	SUPT20H like 1	protein-coding
109481	chr19	812151	813580	+	0	NA	promoter-TSS (NR_036154)	promoter-TSS (NR_036154)	-719	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	mir-3187	microRNA 3187	ncRNA
68032	chr14	75175321	75176300	+	0	NA	intron (NM_006827, intron 1 of 4)	MIRb|SINE|MIR	802	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
217067	chr8	23454701	23455350	+	0	NA	intron (NM_004901, intron 1 of 12)	intron (NM_004901, intron 1 of 12)	2622	NM_004901	9583		NM_004901	ENSG00000197217	ENTPD4	LALP70|LAP70|LYSAL1|NTPDase-4|UDPase	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding
48664	chr12	10481521	10482180	+	0	NA	Intergenic	L1PA7|LINE|L1	-24043	NM_001357731	255308		NM_001357731	ENSG00000180574	EIF2S3B	EIF2S3L|eIF-2gA|eIF2gA	eukaryotic translation initiation factor 2 subunit gamma B	protein-coding
61328	chr13	50519271	50519430	+	0	NA	intron (NR_109974, intron 5 of 6)	L1PA10|LINE|L1	8099	NR_125753	103689915		NR_125753	ENSG00000186047	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
200087	chr6	130179951	130180280	+	0	NA	intron (NM_001258275, intron 9 of 13)	AluJb|SINE|Alu	35770	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
130089	chr2	74505021	74505850	+	0	NA	TTS (NR_024606)	TTS (NR_024606)	-2119	NM_001009812	85474		NM_001009812	ENSG00000179528	LBX2	LP3727	ladybird homeobox 2	protein-coding
169146	chr3	156474921	156475250	+	0	NA	intron (NM_172160, intron 8 of 13)	intron (NM_172160, intron 8 of 13)	-28149	NR_046618	100874084		NR_046618	ENSG00000242370	KCNAB1-AS1	-	KCNAB1 antisense RNA 1	ncRNA
3883	chr1	17013051	17013430	+	0	NA	Intergenic	L2|LINE|L2	-1312	NM_001141973	23400		NM_022089	ENSG00000159363	ATP13A2	CLN12|HSA9947|KRPPD|PARK9|SPG78	ATPase cation transporting 13A2	protein-coding
164202	chr3	56865251	56865350	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	51136	NM_001289698	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
91153	chr17	3764671	3765820	+	0	NA	intron (NM_002208, intron 2 of 30)	AluY|SINE|Alu	35943	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
46576	chr11	128504601	128504980	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	17520	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
76877	chr15	77974451	77975350	+	0	NA	Intergenic	Intergenic	19325	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
184979	chr5	113517201	113517650	+	0	NA	intron (NM_001345976, intron 2 of 27)	intron (NM_001345976, intron 2 of 27)	3731	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
193387	chr6	30359521	30359930	+	0	NA	Intergenic	Intergenic	14569	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
211706	chr7	106862751	106863050	+	0	NA	Intergenic	Intergenic	-2382	NM_001282427	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
9007	chr1	44720771	44720930	+	0	NA	TTS (NR_002753)	TTS (NR_002753)	1051	NR_002753	26828		NR_002753	ENSG00000199377	RNU5F-1	RNU5F|U5F	RNA, U5F small nuclear 1	snRNA
173569	chr4	10108851	10110230	+	0	NA	intron (NM_017491, intron 2 of 14)	intron (NM_017491, intron 2 of 14)	7259	NM_005112	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
112586	chr19	6668371	6669000	+	0	NA	intron (NM_172014, intron 1 of 3)	AluSq|SINE|Alu	1473	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
117264	chr19	19457051	19457550	+	0	NA	intron (NM_001384522, intron 3 of 13)	intron (NM_001384522, intron 3 of 13)	22237	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
150480	chr21	42652521	42652780	+	0	NA	promoter-TSS (NM_002606)	promoter-TSS (NM_002606)	-971	NM_002606	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
149330	chr21	29049401	29050000	+	0	NA	intron (NM_006447, intron 15 of 17)	AluJb|SINE|Alu	23948	NM_006585	10694		NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding
100284	chr17	59701471	59702000	+	0	NA	intron (NM_001015509, intron 1 of 2)	AluY|SINE|Alu	5695	NM_016077	51651		NM_016077	ENSG00000141378	PTRH2	BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2	peptidyl-tRNA hydrolase 2	protein-coding
40647	chr11	64729721	64730380	+	0	NA	intron (NM_001098670, intron 13 of 16)	intron (NM_001098670, intron 13 of 16)	-6853	NM_001376267	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
49558	chr12	26841101	26841300	+	0	NA	Intergenic	LTR78|LTR|ERV1	-8006	NM_002223	3709		NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding
227502	chr9	91231051	91231150	+	0	NA	intron (NM_001351432, intron 7 of 10)	L1PA3|LINE|L1	112038	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
114305	chr19	11879921	11880400	+	0	NA	Intergenic	Intergenic	-7622	NM_001364730	7620		NM_021915	ENSG00000198429	ZNF69	Cos5|hZNF3	zinc finger protein 69	protein-coding
230982	chr9	129482201	129483500	+	0	NA	Intergenic	CpG	-5810	NR_038955	100506190		NR_038955		LINC00963	MetaLnc9	long intergenic non-protein coding RNA 963	ncRNA
146269	chr20	49044021	49044280	+	0	NA	intron (NR_110624, intron 1 of 2)	AluSc8|SINE|Alu	1906	NR_110625	102723483		NR_110624	ENSG00000227431	CSE1L-DT	CSE1L-AS1	CSE1L divergent transcript	ncRNA
13224	chr1	112666071	112666230	+	0	NA	intron (NM_006135, intron 7 of 9)	intron (NM_006135, intron 7 of 9)	-8162	NM_001286072	4343		NM_020963	ENSG00000155363	MOV10	fSAP113|gb110	Mov10 RNA helicase	protein-coding
83279	chr16	24032951	24033450	+	0	NA	intron (NM_212535, intron 4 of 16)	intron (NM_212535, intron 4 of 16)	-169916	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
159331	chr3	13066301	13066830	+	0	NA	intron (NM_001376938, intron 2 of 15)	L2b|LINE|L2	6864	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
66886	chr14	65117821	65118080	+	0	NA	Intergenic	Intergenic	-15255	NR_073138	4149		NM_002382	ENSG00000125952	MAX	PDMCS|bHLHd4	MYC associated factor X	protein-coding
140481	chr2	233185401	233185600	+	0	NA	intron (NM_001017915, intron 20 of 26).2	intron (NM_001017915, intron 20 of 26).2	-66071	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
173680	chr4	15174371	15174630	+	0	NA	intron (NR_125911, intron 2 of 5)	L1PA3|LINE|L1	-165488	NM_001135170	114905		NM_031911	ENSG00000163145	C1QTNF7	CTRP7|ZACRP7	C1q and TNF related 7	protein-coding
174353	chr4	38753351	38753650	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	29490	NM_030956	81793		NM_030956	ENSG00000174123	TLR10	CD290	toll like receptor 10	protein-coding
107711	chr18	49723771	49723950	+	0	NA	Intergenic	Intergenic	89673	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
159004	chr3	10388251	10388550	+	0	NA	exon (NM_001363862, exon 6 of 21)	exon (NM_001363862, exon 6 of 21)	6162	NR_030614	100126334		NR_030614	ENSG00000216135	MIR885	MIRN885|hsa-mir-885|mir-885	microRNA 885	ncRNA
230213	chr9	127833421	127833680	+	0	NA	intron (NM_001114753, intron 2 of 14)	intron (NM_001114753, intron 2 of 14)	13617	NM_001278138	2022		NM_000118	ENSG00000106991	ENG	END|HHT1|ORW1	endoglin	protein-coding
212169	chr7	116873701	116873900	+	0	NA	intron (NM_006136, intron 1 of 9)	intron (NM_006136, intron 1 of 9)	11213	NM_006136	830		NM_006136	ENSG00000198898	CAPZA2	CAPPA2|CAPZ	capping actin protein of muscle Z-line subunit alpha 2	protein-coding
21864	chr1	207579321	207579600	+	0	NA	intron (NM_000651, intron 29 of 46)	MER66C|LTR|ERV1	-65673	NM_175710	1379		NM_175710	ENSG00000197721	CR1L	-	complement C3b/C4b receptor 1 like	protein-coding
115409	chr19	15290871	15291030	+	0	NA	intron (NM_001379291, intron 1 of 19)	intron (NM_001379291, intron 1 of 19)	-10499	NM_058243	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
37369	chr11	16721541	16721650	+	0	NA	intron (NM_001367872, intron 1 of 16)	MER41-int|LTR|ERV1	16882	NM_001367872	55553		NM_017508	ENSG00000110693	SOX6	HSSOX6|SOXD|TOLCAS	SRY-box transcription factor 6	protein-coding
96791	chr17	41813671	41814480	+	0	NA	intron (NM_021939, intron 1 of 9)	intron (NM_021939, intron 1 of 9)	1071	NM_021939	60681		NM_021939	ENSG00000141756	FKBP10	BRKS|BRKS1|FKBP65|OI11|OI6|PPIASE|TLH1|hFKBP65	FKBP prolyl isomerase 10	protein-coding
72845	chr15	40182621	40183280	+	0	NA	intron (NM_001211, intron 5 of 22)	L1MEf|LINE|L1	21881	NM_001211	701		NM_001211	ENSG00000156970	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding
26986	chr10	26780251	26781150	+	0	NA	intron (NR_145410, intron 2 of 11)	HERVL40-int|LTR|ERVL	80258	NM_001012750	10006		NM_005470	ENSG00000136754	ABI1	ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1	abl interactor 1	protein-coding
86457	chr16	66932371	66932850	+	0	NA	intron (NR_046109, intron 4 of 4)	intron (NR_046109, intron 4 of 4)	1792	NR_024525	51647		NM_016062	ENSG00000166595	CIAO2B	CGI-128|CIA2B|FAM96B|MIP18	cytosolic iron-sulfur assembly component 2B	protein-coding
185637	chr5	131529721	131530030	+	0	NA	intron (NM_016340, intron 6 of 27)	AluJr|SINE|Alu	105354	NM_001164389	51735		NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding
34283	chr10	131916171	131917150	+	0	NA	intron (NM_001291310, intron 3 of 9)	intron (NM_001291310, intron 3 of 9)	15652	NM_001291310	55844		NM_018461	ENSG00000175470	PPP2R2D	B55D|B55delta|MDS026	protein phosphatase 2 regulatory subunit Bdelta	protein-coding
50549	chr12	47991421	47991680	+	0	NA	intron (NM_033150, intron 15 of 52)	intron (NM_033150, intron 15 of 52)	12926	NM_001844	1280		NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
61964	chr13	79403001	79404230	+	0	NA	intron (NM_022118, intron 1 of 20)	intron (NM_022118, intron 1 of 20)	2606	NM_001286631	64062		NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding
78081	chr15	90227401	90227600	+	0	NA	intron (NM_001324034, intron 12 of 13)	intron (NM_001324034, intron 12 of 13)	6441	NM_006384	10519		NM_006384	ENSG00000185043	CIB1	CIB|CIBP|EV3|KIP1|PRKDCIP|SIP2-28	calcium and integrin binding 1	protein-coding
171989	chr4	948501	948700	+	0	NA	5' UTR (NM_001297426, exon 4 of 12)	5' UTR (NM_001297426, exon 4 of 12)	16140	NM_032326	84286		NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
104515	chr17	81235251	81235550	+	0	NA	intron (NM_144679, intron 4 of 11)	intron (NM_144679, intron 4 of 11)	3655	NM_144679	146705		NM_144679	ENSG00000167302	TEPSIN	C17orf56|ENTHD2	TEPSIN adaptor related protein complex 4 accessory protein	protein-coding
112807	chr19	7498971	7499450	+	0	NA	intron (NM_198534, intron 1 of 8)	AluSx1|SINE|Alu	1662	NM_198534	374877		NM_198534	ENSG00000198723	SAXO5	C19orf45|TEX45	stabilizer of axonemal microtubules 5	protein-coding
199724	chr6	125747601	125748500	+	0	NA	Intergenic	CpG	-1582	NM_012259	23493		NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding
20202	chr1	193119871	193120230	+	0	NA	Intergenic	Intergenic	-1981	NM_024529	79577		NM_024529	ENSG00000134371	CDC73	C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX	cell division cycle 73	protein-coding
139118	chr2	218984321	218985380	+	0	NA	intron (NM_017521, intron 1 of 2)	intron (NM_017521, intron 1 of 2)	334	NM_017521	54738		NM_017521	ENSG00000163497	FEV	HSRNAFEV|PET-1	FEV transcription factor, ETS family member	protein-coding
178919	chr4	158779501	158779700	+	0	NA	intron (NM_020840, intron 1 of 16)	AluJb|SINE|Alu	10574	NM_001346043	57600		NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding
193014	chr6	28281371	28281900	+	0	NA	promoter-TSS (NM_032507)	promoter-TSS (NM_032507)	98	NM_032507	84547		NM_032507	ENSG00000137338	PGBD1	HUCEP-4|SCAND4|dJ874C20.4	piggyBac transposable element derived 1	protein-coding
174059	chr4	26900071	26900630	+	0	NA	intron (NM_020860, intron 1 of 11)	intron (NM_020860, intron 1 of 11)	39509	NM_001169117	57620		NM_020860	ENSG00000109689	STIM2	-	stromal interaction molecule 2	protein-coding
207185	chr7	43619301	43619930	+	0	NA	exon (NM_004760, exon 4 of 7)	exon (NM_004760, exon 4 of 7)	36507	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
31041	chr10	88896471	88896630	+	0	NA	intron (NM_020799, intron 1 of 10)	intron (NM_020799, intron 1 of 10)	16305	NM_020799	57559		NM_020799	ENSG00000138134	STAMBPL1	ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2	STAM binding protein like 1	protein-coding
35049	chr11	592551	592850	+	0	NA	intron (NM_001286582, intron 6 of 17)	intron (NM_001286582, intron 6 of 17)	16230	NM_001286582	57661		NM_020901	ENSG00000070047	PHRF1	PPP1R125|RNF221	PHD and ring finger domains 1	protein-coding
143644	chr20	31858251	31858980	+	0	NA	intron (NM_001320479, intron 6 of 9)	intron (NM_001320479, intron 6 of 9)	11616	NM_177991	128853		NM_080611	ENSG00000149599	DUSP15	C20orf57|VHY	dual specificity phosphatase 15	protein-coding
210165	chr7	98286701	98287130	+	0	NA	intron (NM_001159491, intron 2 of 2)	MER46C|DNA|TcMar-Tigger	5229	NM_015379	25798		NM_015379	ENSG00000164713	BRI3	I3	brain protein I3	protein-coding
34076	chr10	125014371	125014530	+	0	NA	intron (NM_001083914, intron 3 of 10)	AluJo|SINE|Alu	-8432	NM_001363508	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
166529	chr3	114519421	114519750	+	0	NA	intron (NR_121661, intron 2 of 2)	intron (NR_121661, intron 2 of 2)	65992	NR_121661	101929754		NR_121661	ENSG00000242290	ZBTB20-AS5	-	ZBTB20 antisense RNA 5	ncRNA
179240	chr4	174278501	174278750	+	0	NA	intron (NM_012180, intron 1 of 5)	intron (NM_012180, intron 1 of 5)	5042	NM_012180	26269		NM_012180	ENSG00000164117	FBXO8	DC10|FBS|FBX8	F-box protein 8	protein-coding
96982	chr17	42268101	42268700	+	0	NA	intron (NM_012448, intron 1 of 18)	Tigger3b|DNA|TcMar-Tigger	7991	NM_012448	6777		NM_012448	ENSG00000173757	STAT5B	GHISID2|STAT5	signal transducer and activator of transcription 5B	protein-coding
7357	chr1	32786901	32787550	+	0	NA	intron (NM_003680, intron 6 of 12)	AluJb|SINE|Alu	21598	NM_001198972	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
200314	chr6	133664171	133664580	+	0	NA	intron (NR_109982, intron 4 of 8)	SVA_F|Retroposon|SVA	-156772	NR_027030	154089		NM_153224		LINC01312	-	long intergenic non-protein coding RNA 1312	ncRNA
218860	chr8	60412601	60413150	+	0	NA	intron (NR_103854, intron 1 of 2)	intron (NR_103854, intron 1 of 2)	943	NR_103854	100505532		NR_103854		LINC01301	-	long intergenic non-protein coding RNA 1301	ncRNA
191632	chr6	13142721	13142850	+	0	NA	intron (NM_030948, intron 5 of 14)	L1M4|LINE|L1	129231	NM_001322314	221692		NM_030948	ENSG00000112137	PHACTR1	DEE70|EIEE70|RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding
204883	chr7	6008521	6010600	+	0	NA	promoter-TSS (NM_000535)	promoter-TSS (NM_000535)	-7	NM_001362787	7965		NM_006303	ENSG00000106305	AIMP2	HLD17|JTV-1|JTV1|P38	aminoacyl tRNA synthetase complex interacting multifunctional protein 2	protein-coding
223110	chr8	143461271	143463230	+	0	NA	intron (NM_015117, intron 9 of 11)	MIR|SINE|MIR	-31518	NM_201589	389692		NM_201589	ENSG00000182759	MAFA	INSDM|RIPE3b1|hMafA	MAF bZIP transcription factor A	protein-coding
97599	chr17	44116451	44116750	+	0	NA	intron (NR_136415, intron 1 of 2)	intron (NR_136415, intron 1 of 2)	688	NR_136415	105371789		NR_136415	ENSG00000267638	LOC105371789	-	uncharacterized LOC105371789	ncRNA
123616	chr19	54528821	54529080	+	0	NA	Intergenic	L1MA9|LINE|L1	-3742	NR_104095	90011		NM_033206	ENSG00000290933	KIR3DX1	KIR3DL0|LENG12	killer cell immunoglobulin like receptor, three Ig domains X1 (pseudogene)	pseudo
86935	chr16	68100251	68101330	+	0	NA	intron (NM_173165, intron 1 of 9)	L1MD2|LINE|L1	15420	NM_173163	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
55763	chr12	108559751	108560050	+	0	NA	intron (NM_014706, intron 1 of 18)	LTR33|LTR|ERVL	1273	NM_014706	9733		NM_014706	ENSG00000075856	SART3	DSAP1|P100|RP11-13G14|TIP110|p110|p110(nrb)	spliceosome associated factor 3, U4/U6 recycling protein	protein-coding
152672	chr22	21592321	21592580	+	0	NA	intron (NR_046082, intron 1 of 3)	L2c|LINE|L2	24736	NR_046082	7332		NM_003347	ENSG00000185651	UBE2L3	E2-F1|L-UBC|UBCH7|UbcM4	ubiquitin conjugating enzyme E2 L3	protein-coding
215138	chr7	155412671	155412980	+	0	NA	Intergenic	Intergenic	30749	NR_147174	100286906		NR_147174		LINC03010	-	long intergenic non-protein coding RNA 3010	ncRNA
143743	chr20	32362951	32363450	+	0	NA	intron (NM_001363734, intron 1 of 10)	intron (NM_001363734, intron 1 of 10)	4135	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
54488	chr12	92055871	92056750	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	85403	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
13712	chr1	116770661	116771580	+	0	NA	Intergenic	Intergenic	16690	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
90206	chr17	447971	448130	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2110	NM_182705	359845		NM_182705	ENSG00000183688	RFLNB	CFM1|FAM101B	refilin B	protein-coding
130383	chr2	85308801	85309200	+	0	NA	intron (NM_031283, intron 11 of 11)	intron (NM_031283, intron 11 of 11)	18989	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
229346	chr9	120920871	120921030	+	0	NA	intron (NM_005658, intron 3 of 7)	intron (NM_005658, intron 3 of 7)	5846	NM_005658	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
95840	chr17	38813771	38814200	+	0	NA	intron (NM_017748, intron 3 of 9)	AluY|SINE|Alu	11336	NM_017748	54883		NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding
183271	chr5	76472201	76472800	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	69215	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
132085	chr2	101302551	101303350	+	0	NA	intron (NM_173647, intron 1 of 6)	AluJr|SINE|Alu	5751	NM_173647	284996		NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
28215	chr10	45008551	45008940	+	0	NA	Intergenic	Intergenic	7822	NM_006963	7570		NM_006963	ENSG00000165512	ZNF22	HKR-T1|KOX15|ZNF422|Zfp422	zinc finger protein 22	protein-coding
134814	chr2	148527421	148527880	+	0	NA	Intergenic	Intergenic	-117101	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
199623	chr6	119467471	119467850	+	0	NA	intron (NR_046100, intron 3 of 5)	intron (NR_046100, intron 3 of 5)	23642	NR_046100	285762		NR_046100		LOC285762	-	uncharacterized LOC285762	ncRNA
70109	chr14	100237751	100239400	+	0	NA	promoter-TSS (NM_003403)	promoter-TSS (NM_003403)	-569	NM_003403	7528		NM_003403	ENSG00000100811	YY1	DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding
30976	chr10	87918071	87919030	+	0	NA	intron (NM_001304718, intron 2 of 8)	L3|LINE|CR1	54925	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
39312	chr11	58850701	58851030	+	0	NA	Intergenic	LTR13|LTR|ERVK	-6161	NM_145016	219970		NM_145016	ENSG00000156689	GLYATL2	BXMAS2-10|GATF-B	glycine-N-acyltransferase like 2	protein-coding
530	chr1	1226421	1226680	+	0	NA	intron (NM_016547, intron 2 of 6)	L1MC3|LINE|L1	5451	NM_016176	51150		NM_016176	ENSG00000078808	SDF4	Cab45|SDF-4	stromal cell derived factor 4	protein-coding
99211	chr17	49565871	49566430	+	0	NA	intron (NR_103773, intron 1 of 2)	L2c|LINE|L2	7914	NR_103773	100288866		NR_103773	ENSG00000249906	NGFR-AS1	-	NGFR antisense RNA 1	ncRNA
123182	chr19	52343571	52343880	+	0	NA	intron (NM_001161425, intron 1 of 5)	intron (NM_001161425, intron 1 of 5)	-1704	NM_173530	162963		NM_173530	ENSG00000167554	ZNF610	-	zinc finger protein 610	protein-coding
93165	chr17	17782901	17784180	+	0	NA	intron (NM_030665, intron 2 of 5)	CpG	-4011	NR_024007	140771		NM_144774	ENSG00000226746	SMCR5	NCRNA00034	Smith-Magenis syndrome chromosome region, candidate 5	ncRNA
218473	chr8	51526071	51526230	+	0	NA	intron (NM_144651, intron 4 of 22)	intron (NM_144651, intron 4 of 22)	283295	NM_144651	137902		NM_144651	ENSG00000147485	PXDNL	PMR1|PRM1|VPO2	peroxidasin like	protein-coding
154724	chr22	36453901	36454130	+	0	NA	Intergenic	Intergenic	27625	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
186657	chr5	138574971	138576380	+	0	NA	promoter-TSS (NM_004134)	promoter-TSS (NM_004134)	-274	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
238421	chrX	150683451	150683800	+	0	NA	Intergenic	LTR41|LTR|ERVL	-9337	NM_001353993	8776		NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
149232	chr21	25568201	25568700	+	0	NA	intron (NR_001458, intron 1 of 2)	intron (NR_001458, intron 1 of 2)	-5530	NR_030784	406947		NR_030784	ENSG00000283904	MIR155	MIRN155|miRNA155|mir-155	microRNA 155	ncRNA
171010	chr3	194767871	194768030	+	0	NA	intron (NR_146990, intron 2 of 2)	intron (NR_146990, intron 2 of 2)	759	NR_146990	105374293		NR_146990	ENSG00000230401	LINC01972	-	long intergenic non-protein coding RNA 1972	ncRNA
90552	chr17	1501501	1502330	+	0	NA	intron (NM_016532, intron 7 of 11)	AluSg|SINE|Alu	-9229	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
27187	chr10	28555801	28556330	+	0	NA	intron (NM_100486, intron 3 of 12)	L1M3|LINE|L1	22947	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
219645	chr8	80346921	80347200	+	0	NA	Intergenic	MIRb|SINE|MIR	105671	NR_049894	100847056		NR_049894	ENSG00000265588	MIR5708	-	microRNA 5708	ncRNA
148922	chr21	9129201	9130100	+	0	NA	intron (NR_038329, intron 1 of 2)	CpG	111	NR_038327	100132288		NM_174948	ENSG00000291050	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
156426	chr22	41225071	41225230	+	0	NA	intron (NM_031488, intron 11 of 16)	intron (NM_031488, intron 11 of 16)	-7523	NR_148200	100506544		NR_148200		L3MBTL2-AS1	-	L3MBTL2 antisense RNA 1	ncRNA
141223	chr2	239398921	239399950	+	0	NA	intron (NM_001378417, intron 1 of 26)	intron (NM_001378417, intron 1 of 26)	1585	NM_001378416	9759		NM_006037	ENSG00000068024	HDAC4	AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA|NEDCHF|NEDCHID	histone deacetylase 4	protein-coding
64409	chr14	24175301	24176100	+	0	NA	intron (NM_001048205, intron 6 of 18).2	MIRb|SINE|MIR	3620	NM_001048205	9985		NM_005132	ENSG00000100918	REC8	HR21spB|REC8L1|Rec8p	REC8 meiotic recombination protein	protein-coding
1669	chr1	3903351	3904000	+	0	NA	intron (NR_024455, intron 1 of 3)	intron (NR_024455, intron 1 of 3)	3271	NR_024455	100133612		NR_024455	ENSG00000236423	LINC01134	TLNC1	long intergenic non-protein coding RNA 1134	ncRNA
113315	chr19	8580471	8581500	+	0	NA	exon (NM_001282352, exon 13 of 13)	exon (NM_001282352, exon 13 of 13)	-3543	NM_012335	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
153395	chr22	24650901	24651480	+	0	NA	intron (NR_024593, intron 2 of 5)	intron (NR_024593, intron 2 of 5)	7957	NR_024593	646074		NM_001025230		POM121L10P	-	POM121 transmembrane nucleoporin like 10, pseudogene	pseudo
93190	chr17	17808001	17808380	+	0	NA	intron (NM_030665, intron 4 of 5)	intron (NM_030665, intron 4 of 5)	5355	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
21304	chr1	204493861	204495500	+	0	NA	5' UTR (NM_001377334, exon 1 of 33)	5' UTR (NM_001377334, exon 1 of 33)	125	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
90044	chr16	89914721	89915230	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3887	NM_002386	4157		NM_002386	ENSG00000258839	MC1R	CMM5|MSH-R|SHEP2	melanocortin 1 receptor	protein-coding
186907	chr5	139583901	139585030	+	0	NA	intron (NM_181838, intron 2 of 7)	intron (NM_181838, intron 2 of 7)	23126	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
198136	chr6	90461601	90462000	+	0	NA	Intergenic	L2a|LINE|L2	125272	NM_003188	6885		NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
125822	chr2	24315471	24316050	+	0	NA	intron (NM_147152, intron 2 of 29)	THE1D|LTR|ERVL-MaLR	44776	NM_001348181	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
68345	chr14	77615951	77618150	+	0	NA	promoter-TSS (NM_004863)	promoter-TSS (NM_004863)	-413	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
9228	chr1	45746871	45747230	+	0	NA	intron (NM_001145349, intron 1 of 9)	intron (NM_001145349, intron 1 of 9)	3603	NM_005897	3652		NM_005897	ENSG00000197429	IPP	KLHL27	intracisternal A particle-promoted polypeptide	protein-coding
177506	chr4	118224271	118224500	+	0	NA	intron (NR_146513, intron 6 of 13)	intron (NR_146513, intron 6 of 13)	-54377	NR_034010	100093630		NR_003584	ENSG00000269893	SNHG8	LINC00060|NCRNA00060	small nucleolar RNA host gene 8	ncRNA
39588	chr11	61291371	61291730	+	0	NA	exon (NM_152718, exon 2 of 20)	exon (NM_152718, exon 2 of 20)	3766	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
141347	chr2	240596471	240596630	+	0	NA	intron (NM_023083, intron 8 of 11)	intron (NM_023083, intron 8 of 11)	-8880	NM_001195382	2859		NM_005301	ENSG00000178623	GPR35	-	G protein-coupled receptor 35	protein-coding
60718	chr13	44192571	44193050	+	0	NA	Intergenic	Intergenic	3390	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
178080	chr4	140132301	140132700	+	0	NA	intron (NR_147610, intron 1 of 4)	intron (NR_147610, intron 1 of 4)	4485	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
61016	chr13	48148371	48148730	+	0	NA	Intergenic	Intergenic	-53409	NM_001270629	29079		NM_014166	ENSG00000136146	MED4	ARC36|DRIP36|HSPC126|TRAP36|VDRIP	mediator complex subunit 4	protein-coding
111862	chr19	4634521	4634980	+	0	NA	Intergenic	Intergenic	-4766	NM_152362	126282		NM_152362	ENSG00000185361	TNFAIP8L1	TIPE1	TNF alpha induced protein 8 like 1	protein-coding
3652	chr1	16402001	16402650	+	0	NA	intron (NM_001353349, intron 8 of 10)	AluY|SINE|Alu	35083	NM_001114600	26099		NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
120360	chr19	43598321	43598580	+	0	NA	intron (NM_024327, intron 2 of 2)	MIR|SINE|MIR	1855	NM_001145347	79177		NM_024327	ENSG00000124444	ZNF576	-	zinc finger protein 576	protein-coding
163212	chr3	50243321	50244000	+	0	NA	intron (NM_001282618, intron 1 of 7)	MIR|SINE|MIR	-3250	NM_001166425	2771		NM_002070	ENSG00000114353	GNAI2	GIP|GNAI2B|HG1C|H_LUCA15.1|H_LUCA16.1	G protein subunit alpha i2	protein-coding
154623	chr22	36312501	36312950	+	0	NA	intron (NM_002473, intron 13 of 40)	intron (NM_002473, intron 13 of 40)	-25818	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
20556	chr1	198712001	198712400	+	0	NA	intron (NM_002838, intron 11 of 32)	L1ME2|LINE|L1	73160	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
100232	chr17	59331101	59332200	+	0	NA	promoter-TSS (NM_001005404)	promoter-TSS (NM_001005404)	-5	NM_001005404	388403		NM_001005404	ENSG00000175155	YPEL2	FKSG4	yippee like 2	protein-coding
47422	chr12	3076551	3078200	+	0	NA	promoter-TSS (NM_001168320)	promoter-TSS (NM_001168320)	-4	NM_006675	10867		NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding
160698	chr3	32371221	32372080	+	0	NA	Intergenic	Intergenic	-20203	NM_181472	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
163983	chr3	53074851	53075600	+	0	NA	Intergenic	Intergenic	-29152	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
98067	chr17	45486271	45486430	+	0	NA	intron (NM_014798, intron 1 of 11).3	AluY|SINE|Alu	4371	NR_027774	9842		NM_014798	ENSG00000225190	PLEKHM1	AP162|B2|OPTA3|OPTB6	pleckstrin homology and RUN domain containing M1	protein-coding
196288	chr6	42995001	42995200	+	0	NA	intron (NM_180976, intron 2 of 15)	intron (NM_180976, intron 2 of 15)	10530	NM_001270476	5528		NM_006245	ENSG00000112640	PPP2R5D	B56D|B56delta|HJS1|MRD35	protein phosphatase 2 regulatory subunit B'delta	protein-coding
103164	chr17	77428601	77429030	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-21934	NM_001113496	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
216158	chr8	11700451	11700750	+	0	NA	5' UTR (NM_001308094, exon 2 of 7)	5' UTR (NM_001308094, exon 2 of 7)	-3602	NM_001308093	2626		NM_002052	ENSG00000136574	GATA4	ASD2|TACHD|TOF|VSD1	GATA binding protein 4	protein-coding
230934	chr9	129404301	129404500	+	0	NA	Intergenic	Intergenic	67477	NR_120685	100506119		NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA
76608	chr15	75372651	75372950	+	0	NA	intron (NM_001145358, intron 20 of 20)	AluJb|SINE|Alu	-4173	NM_001256496	4123		NM_006715	ENSG00000140400	MAN2C1	CDDG2|MAN6A8|MANA|MANA1	mannosidase alpha class 2C member 1	protein-coding
178201	chr4	142446771	142447130	+	0	NA	intron (NM_001385342, intron 1 of 23)	L1ME3C|LINE|L1	27471	NM_001385347	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
142258	chr20	3166601	3167080	+	0	NA	exon (NM_001365618, exon 3 of 5)	exon (NM_001365618, exon 3 of 5)	6709	NM_001365618	9762		NM_014731	ENSG00000088899	LZTS3	PROSAPIP1	leucine zipper tumor suppressor family member 3	protein-coding
166974	chr3	125593351	125593650	+	0	NA	intron (NM_022776, intron 1 of 12)	AluSz|SINE|Alu	1997	NM_022776	114885		NM_022776	ENSG00000144909	OSBPL11	ORP-11|ORP11|OSBP12|TCCCIA00292	oxysterol binding protein like 11	protein-coding
217748	chr8	30745471	30745830	+	0	NA	intron (NM_001282189, intron 1 of 7)	intron (NM_001282189, intron 1 of 7)	1485	NM_001282189	7993		NM_005671	ENSG00000104691	UBXN8	D8S2298E|REP8|UBXD6	UBX domain protein 8	protein-coding
94944	chr17	32071471	32072930	+	0	NA	Intergenic	Intergenic	31864	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
207357	chr7	44080751	44081790	+	0	NA	intron (NR_156112, intron 1 of 10)	MIR|SINE|MIR	1260	NM_001284330	27434		NM_013284	ENSG00000122678	POLM	Pol Mu|Tdt-N	DNA polymerase mu	protein-coding
164300	chr3	57654151	57654850	+	0	NA	intron (NM_152678, intron 9 of 19)	intron (NM_152678, intron 9 of 19)	38577	NM_152678	201627		NM_152678	ENSG00000174839	DENND6A	AFI1A|FAM116A	DENN domain containing 6A	protein-coding
137359	chr2	196158771	196159550	+	0	NA	intron (NM_004226, intron 2 of 7)	intron (NM_004226, intron 2 of 7)	12418	NM_004226	9262		NM_004226	ENSG00000081320	STK17B	DRAK2	serine/threonine kinase 17b	protein-coding
57094	chr12	121035521	121035870	+	0	NA	intron (NM_198213, intron 1 of 4)	intron (NM_198213, intron 1 of 4)	3547	NM_003733	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
179193	chr4	173328721	173329130	+	0	NA	Intergenic	AluY|SINE|Alu	4844	NM_001130689	3148		NM_002129	ENSG00000164104	HMGB2	HMG2	high mobility group box 2	protein-coding
133804	chr2	127806951	127807250	+	0	NA	intron (NM_001006623, intron 1 of 7)	AluSq2|SINE|Alu	4071	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
97000	chr17	42285521	42285830	+	0	NA	Intergenic	Intergenic	-1872	NM_003152	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
179342	chr4	183073451	183073800	+	0	NA	Intergenic	Intergenic	25574	NR_024008	152641		NM_153008	ENSG00000251359	WWC2-AS2	C4orf38	WWC2 antisense RNA 2	ncRNA
22655	chr1	223758971	223759330	+	0	NA	intron (NM_001748, intron 11 of 20)	intron (NM_001748, intron 11 of 20)	46611	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
81282	chr16	4662501	4663080	+	0	NA	intron (NM_001142291, intron 5 of 15)	intron (NM_001142291, intron 5 of 15)	-8528	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA
124956	chr2	8671871	8672230	+	0	NA	intron (NR_110154, intron 2 of 3)	intron (NR_110154, intron 2 of 3)	9811	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
210492	chr7	100168121	100168980	+	0	NA	promoter-TSS (NM_024637)	promoter-TSS (NM_024637)	67	NM_024637	79690		NM_024637	ENSG00000197093	GAL3ST4	GAL3ST-4	galactose-3-O-sulfotransferase 4	protein-coding
161563	chr3	42770051	42770680	+	0	NA	promoter-TSS (NR_122070)	promoter-TSS (NR_122070)	-247	NR_122070	729083		NR_122070	ENSG00000225611	CCDC13-AS2	LINC02158	CCDC13 antisense RNA 2	ncRNA
128016	chr2	47164201	47164800	+	0	NA	intron (NM_001743, intron 2 of 5)	AluSx|SINE|Alu	-9192	NM_173649	285051		NM_173649	ENSG00000239605	STPG4	C2orf61|GSE	sperm-tail PG-rich repeat containing 4	protein-coding
193155	chr6	29648001	29648430	+	0	NA	Intergenic	Intergenic	-8877	NM_206814	4340		NM_002433	ENSG00000204655	MOG	BTN6|BTNL11|MOGIG2|NRCLP7	myelin oligodendrocyte glycoprotein	protein-coding
6553	chr1	28651501	28651800	+	0	NA	Intergenic	AluSg|SINE|Alu	3050	NR_004407	26824		NR_004407	ENSG00000274978	RNU11	RNU11-1|U11	RNA, U11 small nuclear	snRNA
73052	chr15	40893621	40895730	+	0	NA	5' UTR (NM_020857, exon 1 of 5)	5' UTR (NM_020857, exon 1 of 5)	225	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
160666	chr3	31981571	31981880	+	0	NA	promoter-TSS (NM_001137674)	promoter-TSS (NM_001137674)	-25	NM_001137674	344787		NM_001137674	ENSG00000197385	ZNF860	-	zinc finger protein 860	protein-coding
191783	chr6	14132071	14132230	+	0	NA	intron (NM_001040280, intron 3 of 4)	L2a|LINE|L2	14378	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
79623	chr16	1104351	1104880	+	0	NA	Intergenic	Intergenic	-8371	NM_207419	390664		NM_207419	ENSG00000184471	C1QTNF8	CTRP8|UNQ5829	C1q and TNF related 8	protein-coding
50832	chr12	49108101	49108300	+	0	NA	intron (NM_001352161, intron 1 of 16)	AluSg|SINE|Alu	2700	NM_001352166	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
224100	chr9	4555151	4555500	+	0	NA	intron (NM_004170, intron 2 of 11)	intron (NM_004170, intron 2 of 11)	64857	NM_004170	6505		NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18|hEAAC1	solute carrier family 1 member 1	protein-coding
121086	chr19	45891751	45892250	+	0	NA	intron (NM_001012643, intron 2 of 2)	AluSz6|SINE|Alu	-5859	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
166038	chr3	108590601	108591430	+	0	NA	intron (NM_014648, intron 1 of 32)	L2a|LINE|L2	1293	NM_014648	9666		NM_014648	ENSG00000198919	DZIP3	PPP1R66|UURF2|hRUL138	DAZ interacting zinc finger protein 3	protein-coding
137053	chr2	190887951	190888050	+	0	NA	intron (NM_014905, intron 1 of 17)	intron (NM_014905, intron 1 of 17)	7179	NM_014905	2744		NM_014905	ENSG00000115419	GLS	AAD20|CASGID|DEE71|EIEE71|GAC|GAM|GDPAG|GLS1|KGA	glutaminase	protein-coding
171237	chr3	195782951	195783350	+	0	NA	exon (NM_018406, exon 2 of 25)	exon (NM_018406, exon 2 of 25)	28779	NM_004532	4585		NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding
124606	chr2	954501	954700	+	0	NA	intron (NM_018968, intron 1 of 16)	intron (NM_018968, intron 1 of 16)	-3208	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
91235	chr17	3940771	3941980	+	0	NA	intron (NM_174953, intron 13 of 22)	intron (NM_174953, intron 13 of 22)	23062	NM_174958	489		NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding
32973	chr10	110500651	110500750	+	0	NA	intron (NM_004419, intron 1 of 3)	intron (NM_004419, intron 1 of 3)	2793	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
92203	chr17	7850101	7850400	+	0	NA	intron (NM_001348716, intron 13 of 22)	intron (NM_001348716, intron 13 of 22)	-4816	NM_203411	92162		NM_203411	ENSG00000167874	TMEM88	-	transmembrane protein 88	protein-coding
230078	chr9	127453521	127454630	+	0	NA	5' UTR (NM_001384142, exon 3 of 26)	5' UTR (NM_001384142, exon 3 of 26)	1820	NM_001005374	90678		NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding
213285	chr7	134886571	134886730	+	0	NA	intron (NM_033138, intron 3 of 14)	Plat_L3|LINE|CR1	-4750	NM_033139	800		NM_004342	ENSG00000122786	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22|h-CD	caldesmon 1	protein-coding
4402	chr1	21172571	21173780	+	0	NA	intron (NM_001198801, intron 2 of 34)	intron (NM_001198801, intron 2 of 34)	3722	NM_001198801	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
77746	chr15	85747951	85748330	+	0	NA	3' UTR (NM_001270546, exon 29 of 29)	3' UTR (NM_001270546, exon 29 of 29)	10585	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
73544	chr15	43872551	43872650	+	0	NA	non-coding (NR_104455, exon 15 of 15)	non-coding (NR_104455, exon 15 of 15)	5571	NR_003571	728758		NR_003571		PIN4P1	-	peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1	pseudo
198713	chr6	108165771	108166130	+	0	NA	promoter-TSS (NM_003269)	promoter-TSS (NM_003269)	-72	NM_003269	7101		NM_003269	ENSG00000112333	NR2E1	TLL|TLX|XTLL	nuclear receptor subfamily 2 group E member 1	protein-coding
201128	chr6	142887621	142888180	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	57276	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
130910	chr2	87466601	87467630	+	0	NA	intron (NR_024206, intron 1 of 1)	intron (NR_024206, intron 1 of 1)	-2835	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
33827	chr10	123926771	123926930	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-35043	NM_198148	119587		NM_198148	ENSG00000121898	CPXM2	CPX2|UNQ676	carboxypeptidase X, M14 family member 2	protein-coding
177887	chr4	128826471	128826630	+	0	NA	intron (NM_001287443, intron 1 of 10)	AluSz6|SINE|Alu	14706	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
194004	chr6	31791321	31792180	+	0	NA	intron (NM_006295, intron 7 of 29).4	intron (NM_006295, intron 7 of 29).4	4002	NM_006295	7407		NM_006295	ENSG00000204394	VARS1	G7A|NDMSCA|VARS|VARS2	valyl-tRNA synthetase 1	protein-coding
126403	chr2	27642571	27643130	+	0	NA	intron (NR_026735, intron 10 of 11)	AluSp|SINE|Alu	13800	NM_007266	11321		NM_007266	ENSG00000198522	GPN1	ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1	GPN-loop GTPase 1	protein-coding
191684	chr6	13489251	13489350	+	0	NA	Intergenic	Intergenic	-1663	NM_001242629	54438		NM_018988	ENSG00000145990	GFOD1	ADG-90|C6orf114	Gfo/Idh/MocA-like oxidoreductase domain containing 1	protein-coding
28488	chr10	49873271	49873430	+	0	NA	intron (NR_136754, intron 9 of 17)	intron (NR_136754, intron 9 of 17)	68677	NR_136754	8505		NM_003631	ENSG00000227345	PARG	PARG99	poly(ADP-ribose) glycohydrolase	protein-coding
19245	chr1	172660871	172661430	+	0	NA	intron (NM_000639, intron 2 of 3)	intron (NM_000639, intron 2 of 3)	2047	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
182344	chr5	59171201	59171400	+	0	NA	intron (NM_001364600, intron 7 of 7)	intron (NM_001364600, intron 7 of 7)	104815	NM_001197220	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
195890	chr6	41704021	41704280	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	29460	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
37809	chr11	32971951	32972050	+	0	NA	intron (NM_001076786, intron 10 of 12)	AluY|SINE|Alu	-43878	NM_001077242	91614		NM_139160	ENSG00000121690	DEPDC7	TR2|dJ85M6.4	DEP domain containing 7	protein-coding
53104	chr12	57767801	57768130	+	0	NA	promoter-TSS (NM_000785)	promoter-TSS (NM_000785)	-887	NM_000785	1594		NM_000785	ENSG00000111012	CYP27B1	CP2B|CYP1|CYP1alpha|CYP27B|P450c1|PDDR|VDD1|VDDR|VDDRI|VDR	cytochrome P450 family 27 subfamily B member 1	protein-coding
194331	chr6	32849601	32849800	+	0	NA	intron (NM_001292022, intron 5 of 10).7	AluY|SINE|Alu	3061	NM_001292022	6890		NM_000593	ENSG00000168394	TAP1	ABC17|ABCB2|APT1|D6S114E|PSF-1|PSF1|RING4|TAP1*0102N|TAP1N	transporter 1, ATP binding cassette subfamily B member	protein-coding
227494	chr9	91192551	91193400	+	0	NA	Intergenic	Intergenic	73913	NR_135306	100129347		NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA
54215	chr12	79921871	79922230	+	0	NA	intron (NM_001143885, intron 2 of 25)	AluJr|SINE|Alu	-8139	NM_001143886	4659		NM_002480	ENSG00000058272	PPP1R12A	GUBS|M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding
14648	chr1	145606871	145607030	+	0	NA	intron (NR_104217, intron 1 of 19)	intron (NR_104217, intron 1 of 19)	908	NR_104217	101929780		NR_104217	ENSG00000291005	NBPF25P	WI2-925H4.1	NBPF member 25, pseudogene	pseudo
198614	chr6	107731001	107732900	+	0	NA	intron (NM_001286408, intron 4 of 6)	intron (NM_001286408, intron 4 of 6)	200	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
103505	chr17	78417121	78417580	+	0	NA	intron (NM_024419, intron 8 of 9)	intron (NM_024419, intron 8 of 9)	38701	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
148044	chr20	63222571	63222730	+	0	NA	Intergenic	Intergenic	-6519	NM_017798	54915		NM_017798	ENSG00000149658	YTHDF1	C20orf21|DF1	YTH N6-methyladenosine RNA binding protein F1	protein-coding
146728	chr20	50635971	50636400	+	0	NA	intron (NM_001290268, intron 1 of 21)	intron (NM_001290268, intron 1 of 21)	733	NM_080829	140876		NM_080829	ENSG00000042062	RIPOR3	C20orf175|C20orf176|FAM65C	RIPOR family member 3	protein-coding
202153	chr6	155186101	155186500	+	0	NA	intron (NM_001384547, intron 13 of 25)	LTR16E1|LTR|ERVL	-30666	NM_001010927	26230		NM_012454	ENSG00000146426	TIAM2	STEF|TIAM-2	TIAM Rac1 associated GEF 2	protein-coding
44253	chr11	101739951	101740050	+	0	NA	Intergenic	L2a|LINE|L2	-155993	NM_004621	7225		NM_004621	ENSG00000137672	TRPC6	FSGS2|TRP6	transient receptor potential cation channel subfamily C member 6	protein-coding
86419	chr16	66869471	66869630	+	0	NA	Intergenic	Intergenic	-10965	NM_001329931	57546		NM_020786	ENSG00000172840	PDP2	PDPC 2|PPM2B|PPM2C2	pyruvate dehydrogenase phosphatase catalytic subunit 2	protein-coding
59618	chr13	27926771	27927130	+	0	NA	TTS (NM_000209)	TTS (NM_000209)	6950	NM_000209	3651		NM_000209	ENSG00000139515	PDX1	GSF|IDX-1|IPF1|IUF1|MODY4|PAGEN1|PDX-1|STF-1	pancreatic and duodenal homeobox 1	protein-coding
4092	chr1	19205451	19205750	+	0	NA	intron (NM_020765, intron 1 of 105)	intron (NM_020765, intron 1 of 105)	4666	NM_020765	23352		NM_020765	ENSG00000127481	UBR4	RBAF600|ZUBR1|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding
184524	chr5	102153301	102153630	+	0	NA	Intergenic	Intergenic	142819	NM_180991	353189		NM_180991	ENSG00000173930	SLCO4C1	OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20	solute carrier organic anion transporter family member 4C1	protein-coding
236456	chrX	71570101	71570300	+	0	NA	intron (NM_181672, intron 21 of 21)	AluSg|SINE|Alu	-7824	NM_052957	93953		NM_052957	ENSG00000147174	GCNA	ACRC|NAAR1|SPGFX4	germ cell nuclear acidic peptidase	protein-coding
160912	chr3	35296621	35296880	+	0	NA	intron (NR_110817, intron 2 of 3)	intron (NR_110817, intron 2 of 3)	97273	NR_110817	101928135		NR_110817		LOC101928135	-	uncharacterized LOC101928135	ncRNA
14426	chr1	144367521	144368100	+	0	NA	Intergenic	Intergenic	5849	NM_001164261	645142		NM_001164261	ENSG00000289549	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding
85444	chr16	50549721	50550550	+	0	NA	intron (NM_033119, intron 3 of 9)	intron (NM_033119, intron 3 of 9)	1739	NM_033119	85407		NM_033119	ENSG00000140807	NKD1	Naked1	NKD inhibitor of WNT signaling pathway 1	protein-coding
148450	chr20	64005201	64005400	+	0	NA	intron (NM_012469, intron 9 of 20)	intron (NM_012469, intron 9 of 20)	24168	NM_012469	24148		NM_012469	ENSG00000101161	PRPF6	ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6	pre-mRNA processing factor 6	protein-coding
194837	chr6	34413601	34413800	+	0	NA	intron (NM_001202470, intron 5 of 8)	AluSx3|SINE|Alu	12369	NM_001204091	6204		NM_001014	ENSG00000124614	RPS10	DBA9|S10|eS10	ribosomal protein S10	protein-coding
223445	chr8	143974421	143975600	+	0	NA	intron (NM_000445, intron 2 of 32)	CpG-27770	-1481	NM_201378	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
177381	chr4	112138951	112139060	+	0	NA	Intergenic	Intergenic	-6449	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
31884	chr10	100266921	100268250	+	0	NA	promoter-TSS (NM_001303406)	promoter-TSS (NM_001303406)	53	NM_018294	55280		NM_018294	ENSG00000095485	CWF19L1	C19L1|SCAR17|hDrn1	CWF19 like cell cycle control factor 1	protein-coding
129388	chr2	68810851	68811150	+	0	NA	intron (NM_001364820, intron 4 of 9)	AluSx1|SINE|Alu	36090	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
196693	chr6	44900321	44900630	+	0	NA	intron (NM_001350327, intron 9 of 9)	L1PA4|LINE|L1	297295	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
54654	chr12	93243801	93244750	+	0	NA	intron (NR_040096, intron 2 of 4)	Tigger12|DNA|TcMar-Tigger	69909	NR_120492	102724933		NR_120492		LINC02412	-	long intergenic non-protein coding RNA 2412	ncRNA
160283	chr3	26783551	26783650	+	0	NA	Intergenic	L1PA3|LINE|L1	89043	NM_001317811	116135		NM_052953	ENSG00000179796	LRRC3B	LRP15	leucine rich repeat containing 3B	protein-coding
215727	chr8	1762701	1764700	+	0	NA	promoter-TSS (NM_018941)	promoter-TSS (NM_018941)	-89	NM_018941	2055		NM_018941	ENSG00000182372	CLN8	C8orf61|EPMR|TLCD6	CLN8 transmembrane ER and ERGIC protein	protein-coding
83925	chr16	29038621	29039080	+	0	NA	Intergenic	AluJb|SINE|Alu	-35992	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
103932	chr17	79833621	79834100	+	0	NA	3' UTR (NM_003655, exon 5 of 5)	3' UTR (NM_003655, exon 5 of 5)	5580	NM_003655	8535		NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding
221767	chr8	127889951	127890330	+	0	NA	intron (NR_003367, intron 1 of 8)	intron (NR_003367, intron 1 of 8)	58583	NR_103558	641384		NM_001037234	ENSG00000280055	LINC02912	TMEM75	long intergenic non-protein coding RNA 2912	ncRNA
175691	chr4	77067051	77067350	+	0	NA	intron (NM_006835, intron 1 of 6)	AluSg|SINE|Alu	7710	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
230162	chr9	127768501	127769080	+	0	NA	intron (NM_001252334, intron 1 of 11)	L2a|LINE|L2	2504	NM_005489	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
209740	chr7	87190121	87190680	+	0	NA	intron (NR_024550, intron 13 of 17)	MIRc|SINE|MIR	29332	NM_024315	79161		NM_024315	ENSG00000135185	TMEM243	C7orf23|MM-TRAG|MMTRAG	transmembrane protein 243	protein-coding
206543	chr7	35424851	35425200	+	0	NA	Intergenic	Intergenic	111170	NR_038864	401324		NR_038864		LOC401324	-	uncharacterized LOC401324	ncRNA
44773	chr11	112289951	112291000	+	0	NA	intron (NR_126004, intron 1 of 3)	CpG	19726	NR_126004	283140		NR_126004	ENSG00000250303	LINC02762	-	long intergenic non-protein coding RNA 2762	ncRNA
62793	chr13	109219401	109219600	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	-52197	NR_047700	100885782		NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA
186878	chr5	139516401	139516600	+	0	NA	Intergenic	Intergenic	-33742	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
96689	chr17	41325801	41327280	+	0	NA	Intergenic	Intergenic	-10830	NM_031964	83902		NM_031964	ENSG00000186860	KRTAP17-1	KAP17.1|KRTAP16.1|KRTAP17.1	keratin associated protein 17-1	protein-coding
18697	chr1	167432871	167433300	+	0	NA	intron (NM_198053, intron 6 of 7)	intron (NM_198053, intron 6 of 7)	85444	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
233234	chr9	137249201	137249600	+	0	NA	TTS (NR_038389)	TTS (NR_038389)	-1649	NM_001001710	401565		NM_001001710	ENSG00000188163	CIMIP2A	FAM166A|HSD46	ciliary microtubule inner protein 2A	protein-coding
169599	chr3	171049571	171050100	+	0	NA	Intergenic	Intergenic	-23115	NM_000340	6514		NM_000340	ENSG00000163581	SLC2A2	GLUT2	solute carrier family 2 member 2	protein-coding
78844	chr15	99927001	99927700	+	0	NA	Intergenic	CpG	120327	NR_135737	400464		NM_001013670		LOC400464	-	ubiquitin conjugating enzyme E2 Q2 pseudogene	pseudo
234754	chrX	23668651	23668750	+	0	NA	intron (NM_006406, intron 1 of 6)	intron (NM_006406, intron 1 of 6)	1207	NM_006406	10549		NM_006406	ENSG00000123131	PRDX4	AOE37-2|AOE372|HEL-S-97n|PRX-4	peroxiredoxin 4	protein-coding
57324	chr12	121685421	121686050	+	0	NA	Intergenic	MIRb|SINE|MIR	-13091	NM_001363685	283385		NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding
46348	chr11	125649551	125649990	+	0	NA	intron (NM_001244846, intron 11 of 11)	U2|snRNA|snRNA	23414	NM_001274	1111		NM_001274	ENSG00000149554	CHEK1	CHK1|OZEMA21	checkpoint kinase 1	protein-coding
190339	chr5	179633371	179633530	+	0	NA	intron (NM_001364226, intron 1 of 13)	AluY|SINE|Alu	1334	NM_001364233	3187		NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|NEDCDS|hnRNPH	heterogeneous nuclear ribonucleoprotein H1	protein-coding
158451	chr22	50624871	50625030	+	0	NA	3' UTR (NM_001085425, exon 9 of 9)	3' UTR (NM_001085425, exon 9 of 9)	3202	NM_000487	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
12299	chr1	100896601	100897600	+	0	NA	intron (NM_133496, intron 2 of 10)	intron (NM_133496, intron 2 of 10)	1010	NM_001144884	148867		NM_133496	ENSG00000162695	SLC30A7	ZHS|ZNT7|ZnT-7|ZnTL2	solute carrier family 30 member 7	protein-coding
212989	chr7	130988251	130989930	+	0	NA	intron (NR_109855, intron 2 of 4)	intron (NR_109855, intron 2 of 4)	75626	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
122898	chr19	50553701	50553900	+	0	NA	intron (NM_001080457, intron 1 of 2)	L2a|LINE|L2	-2758	NM_001348568	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
221510	chr8	124627971	124628530	+	0	NA	intron (NM_001363300, intron 3 of 12)	intron (NM_001363300, intron 3 of 12)	89127	NM_005005	4715		NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|MC1DN24|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding
64521	chr14	24425651	24426150	+	0	NA	TTS (NM_001039771)	TTS (NM_001039771)	-3386	NM_001290256	23351		NM_015299	ENSG00000100441	KHNYN	KIAA0323	KH and NYN domain containing	protein-coding
196794	chr6	45714571	45715130	+	0	NA	Intergenic	Intergenic	222747	NR_045674	53405		NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding
38527	chr11	45897021	45897280	+	0	NA	intron (NM_005456, intron 1 of 11)	MIR1_Amn|SINE|MIR	10121	NM_001080446	143678		NM_001080446	ENSG00000234776	FREY1	C11orf94|Frey	Frey regulator of sperm-oocyte fusion 1	protein-coding
125795	chr2	23939321	23941450	+	0	NA	promoter-TSS (NM_181713)	promoter-TSS (NM_181713)	-78	NM_181713	165324		NM_181713	ENSG00000173960	UBXN2A	UBXD4	UBX domain protein 2A	protein-coding
234903	chrX	31039071	31039230	+	0	NA	Intergenic	Intergenic	32891	NM_031894	53940		NM_031894	ENSG00000132446	FTHL17	CT38	ferritin heavy chain like 17	protein-coding
22214	chr1	212482171	212482330	+	0	NA	Intergenic	Intergenic	49330	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
133037	chr2	112121621	112121950	+	0	NA	Intergenic	Intergenic	-16600	NM_001128165	129804		NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
203039	chr6	164396651	164396750	+	0	NA	Intergenic	L1ME1|LINE|L1	425363	NR_131926	105378111		NR_131926		MEAT6	-	melanoma-associated transcript 6	ncRNA
228669	chr9	107295821	107296080	+	0	NA	intron (NM_001244713, intron 1 of 9)	intron (NM_001244713, intron 1 of 9)	11181	NM_001244713	5887		NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding
118557	chr19	36139121	36140400	+	0	NA	promoter-TSS (NM_001749)	promoter-TSS (NM_001749)	-306	NM_001003962	826		NM_001749	ENSG00000126247	CAPNS1	CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1|PPH6	calpain small subunit 1	protein-coding
9606	chr1	52359301	52359500	+	0	NA	intron (NM_032449, intron 9 of 23)	intron (NM_032449, intron 9 of 23)	6805	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
120113	chr19	42184151	42184730	+	0	NA	Intergenic	Intergenic	33237	NR_073046	162989		NM_133328	ENSG00000160570	DEDD2	FLAME-3|FLAME3	death effector domain containing 2	protein-coding
40566	chr11	64346271	64346430	+	0	NA	intron (NM_032251, intron 14 of 26)	AluSx|SINE|Alu	-4446	NR_106977	102466815		NR_106977	ENSG00000278359	MIR7155	hsa-mir-7155	microRNA 7155	ncRNA
70867	chr14	103719671	103720030	+	0	NA	intron (NM_024071, intron 1 of 6)	AluJo|SINE|Alu	4040	NM_024071	79038		NM_024071	ENSG00000100711	ZFYVE21	HCVP7TP1|ZF21	zinc finger FYVE-type containing 21	protein-coding
46702	chr11	128825051	128825150	+	0	NA	Intergenic	Intergenic	17369	NM_000220	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
227006	chr9	83698721	83699030	+	0	NA	intron (NM_053067, intron 1 of 9)	AluJb|SINE|Alu	-8960	NR_135839	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
15166	chr1	149056271	149056850	+	0	NA	exon (NM_001037675, exon 20 of 21)	exon (NM_001037675, exon 20 of 21)	25751	NM_001277444	400818		NM_001037675	ENSG00000269713	NBPF9	AE01	NBPF member 9	protein-coding
112082	chr19	5338801	5339200	+	0	NA	intron (NM_130853, intron 1 of 28)	CpG	1812	NM_002850	5802		NM_002850	ENSG00000105426	PTPRS	PTPSIGMA|R-PTP-S|R-PTP-sigma	protein tyrosine phosphatase receptor type S	protein-coding
45031	chr11	117027851	117027950	+	0	NA	intron (NM_001281748, intron 1 of 24)	intron (NM_001281748, intron 1 of 24)	70528	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
233380	chr9	137517101	137517630	+	0	NA	intron (NM_001098537, intron 11 of 34)	intron (NM_001098537, intron 11 of 34)	33037	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
228580	chr9	104749471	104749630	+	0	NA	intron (NM_001329570, intron 1 of 4)	intron (NM_001329570, intron 1 of 4)	1867	NM_001329570	25934		NM_015469	ENSG00000136783	NIPSNAP3A	HSPC299|NIPSNAP4|TASSC	nipsnap homolog 3A	protein-coding
234653	chrX	20130751	20131050	+	0	NA	intron (NM_001412, intron 5 of 6)	intron (NM_001412, intron 5 of 6)	5513	NR_023358	100158262		NR_023358		SCARNA9L	-	small Cajal body-specific RNA 9 like	ncRNA
41039	chr11	65452451	65452780	+	0	NA	Intergenic	L1PA17|LINE|L1	-2671	NR_160548	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
167611	chr3	129575051	129575230	+	0	NA	intron (NM_015103, intron 11 of 35)	intron (NM_015103, intron 11 of 35)	26755	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
194496	chr6	33270201	33270400	+	0	NA	intron (NM_001289175, intron 1 of 19).6	intron (NM_001289175, intron 1 of 19).6	1576	NM_022553	6293		NM_022553	ENSG00000223501	VPS52	ARE1|SAC2|SACM2L|dJ1033B10.5	VPS52 subunit of GARP complex	protein-coding
229218	chr9	114900051	114900150	+	0	NA	intron (NM_001252290, intron 4 of 4)	intron (NM_001252290, intron 4 of 4)	30491	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
92726	chr17	14296551	14296650	+	0	NA	Intergenic	LTR33|LTR|ERVL	-4481	NR_130138	9953		NM_006041	ENSG00000125430	HS3ST3B1	3-OST-3B|3OST3B1|h3-OST-3B	heparan sulfate-glucosamine 3-sulfotransferase 3B1	protein-coding
42665	chr11	72573371	72574150	+	0	NA	TTS (NR_126364)	TTS (NR_126364)	3104	NR_126364	101928555		NR_126364	ENSG00000227467	LINC01537	-	long intergenic non-protein coding RNA 1537	ncRNA
203333	chr6	170221471	170221630	+	0	NA	Intergenic	Intergenic	41019	NR_002787	154449		NR_002787	ENSG00000230960	LOC154449	-	uncharacterized LOC154449	ncRNA
63049	chr13	113106971	113107750	+	0	NA	intron (NM_000131, intron 2 of 8)	CpG	1569	NM_019616	2155		NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding
16234	chr1	153944621	153945600	+	0	NA	intron (NM_014856, intron 1 of 27)	intron (NM_014856, intron 1 of 27)	146	NM_001367466	9909		NM_014856	ENSG00000198837	DENND4B	KIAA0476	DENN domain containing 4B	protein-coding
145157	chr20	38839651	38841590	+	0	NA	intron (NM_001172735, intron 2 of 9)	L2c|LINE|L2	34923	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
173148	chr4	6674601	6675880	+	0	NA	non-coding (NR_158178, exon 2 of 2)	non-coding (NR_158178, exon 2 of 2)	1165	NR_015433								
121534	chr19	47235551	47235850	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3033	NM_001127242	27113		NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding
214328	chr7	149284051	149286100	+	0	NA	promoter-TSS (NR_036573)	promoter-TSS (NR_036573)	-206	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
57968	chr12	123929901	123930300	+	0	NA	intron (NM_207437, intron 71 of 77)	intron (NM_207437, intron 71 of 77)	41959	NM_001304959	80212		NM_025140	ENSG00000119242	CCDC92	-	coiled-coil domain containing 92	protein-coding
16452	chr1	154582621	154583280	+	0	NA	3' UTR (NM_001365048, exon 15 of 15)	3' UTR (NM_001365048, exon 15 of 15)	15172	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
54333	chr12	89662751	89663080	+	0	NA	intron (NM_001366524, intron 1 of 21)	intron (NM_001366524, intron 1 of 21)	45923	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
207851	chr7	50354851	50354950	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	35852	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
212548	chr7	128860821	128861650	+	0	NA	intron (NR_149055, intron 1 of 3)	L2c|LINE|L2	1391	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
2564	chr1	9784401	9785450	+	0	NA	intron (NM_014944, intron 1 of 17)	intron (NM_014944, intron 1 of 17)	39040	NM_001009566	22883		NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding
64670	chr14	31947401	31948020	+	0	NA	intron (NR_146544, intron 1 of 1)	intron (NR_146544, intron 1 of 1)	2857	NR_146544	105370439		NR_146544	ENSG00000258474	LINC02313	-	long intergenic non-protein coding RNA 2313	ncRNA
42690	chr11	72640871	72641350	+	0	NA	intron (NM_001243784, intron 1 of 30)	intron (NM_001243784, intron 1 of 30)	1333	NM_001143839	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
194468	chr6	33199961	33201930	+	0	NA	promoter-TSS (NM_001270401)	promoter-TSS (NM_001270401)	78	NM_006979	7922		NM_006979	ENSG00000112473	SLC39A7	AGM9|D6S115E|D6S2244E|H2-KE4|HKE4|KE4|RING5|ZIP7	solute carrier family 39 member 7	protein-coding
29427	chr10	70322071	70322230	+	0	NA	intron (NR_103468, intron 2 of 2)	intron (NR_103468, intron 2 of 2)	-38146	NM_022146	64106		NM_022146	ENSG00000148734	NPFFR1	GPR147|NPFF1|NPFF1R1|OT7T022	neuropeptide FF receptor 1	protein-coding
86843	chr16	67925601	67925800	+	0	NA	intron (NM_006742, intron 2 of 2)	intron (NM_006742, intron 2 of 2)	6162	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
8997	chr1	44673851	44675800	+	0	NA	promoter-TSS (NM_001300746)	promoter-TSS (NM_001300746)	111	NM_001145636	339541		NM_001004307	ENSG00000198520	ARMH1	C1orf228|NCRNA00082|p40	armadillo like helical domain containing 1	protein-coding
22722	chr1	224187221	224187830	+	0	NA	intron (NM_001321542, intron 1 of 2)	AluJr|SINE|Alu	3845	NM_001321542	8560		NM_003676	ENSG00000143753	DEGS1	DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD	delta 4-desaturase, sphingolipid 1	protein-coding
134302	chr2	135962571	135963430	+	0	NA	intron (NM_001293312, intron 2 of 14)	intron (NM_001293312, intron 2 of 14)	-22176	NR_110199	101928243		NR_110199		DARS1-AS1	DARS-AS1	DARS1 antisense RNA 1	ncRNA
71905	chr15	22737651	22737750	+	0	NA	Intergenic	L2b|LINE|L2	-20157	NR_040057	283683		NR_040057	ENSG00000274253	LOC283683	-	uncharacterized LOC283683	ncRNA
91313	chr17	4336521	4336980	+	0	NA	intron (NM_003342, intron 1 of 5)	intron (NM_003342, intron 1 of 5)	29924	NM_003342	7326		NM_003342	ENSG00000132388	UBE2G1	E217K|UBC7|UBE2G	ubiquitin conjugating enzyme E2 G1	protein-coding
82508	chr16	17462151	17462650	+	0	NA	intron (NM_022166, intron 1 of 11)	intron (NM_022166, intron 1 of 11)	8560	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
17605	chr1	156897121	156897450	+	0	NA	intron (NM_001080471, intron 1 of 22)	L2b|LINE|L2	3567	NM_001353683	375033		NM_207369	ENSG00000187800	PEAR1	JEDI|MEGF12	platelet endothelial aggregation receptor 1	protein-coding
83717	chr16	28506751	28506850	+	0	NA	promoter-TSS (NM_145659)	promoter-TSS (NM_145659)	34	NM_145659	246778		NM_145659	ENSG00000197272	IL27	IL-27|IL-27A|IL27A|IL27p28|IL30|p28	interleukin 27	protein-coding
151840	chr22	18527751	18530980	+	0	NA	intron (NM_001242313, intron 4 of 8)	CpG-18724	1563	NM_001242313	728229		NM_001242313	ENSG00000278558	TMEM191B	-	transmembrane protein 191B	protein-coding
72933	chr15	40433121	40433380	+	0	NA	intron (NR_148925, intron 13 of 13)	MIRb|SINE|MIR	-6507	NM_001301132	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
171169	chr3	195638301	195638750	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	13634	NR_136185	105374297		NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA
120736	chr19	45372621	45372880	+	0	NA	Intergenic	L2c|LINE|L2	-2163	NM_001130867	2068		NM_000400	ENSG00000104884	ERCC2	COFS2|EM9|TFIIH|TTD|TTD1|XPD	ERCC excision repair 2, TFIIH core complex helicase subunit	protein-coding
151375	chr21	45889301	45889700	+	0	NA	intron (NM_001382276, intron 6 of 18)	intron (NM_001382276, intron 6 of 18)	41350	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
36966	chr11	11577021	11577500	+	0	NA	intron (NM_001363464, intron 1 of 9)	intron (NM_001363464, intron 1 of 9)	44745	NM_198516	374378		NM_198516	ENSG00000110328	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
141841	chr20	461621	463300	+	0	NA	promoter-TSS (NM_144628)	promoter-TSS (NM_144628)	73	NR_111901	128637		NM_144628	ENSG00000125875	TBC1D20	C20orf140|WARBM4	TBC1 domain family member 20	protein-coding
190033	chr5	177508851	177509280	+	0	NA	intron (NM_001375799, intron 3 of 6)	intron (NM_001375799, intron 3 of 6)	761	NM_001384137	79930		NM_024872	ENSG00000146094	DOK3	DOKL	docking protein 3	protein-coding
27389	chr10	31136871	31137550	+	0	NA	Intergenic	Intergenic	-50673	NR_134478	101929352		NR_134478		LINC02664	-	long intergenic non-protein coding RNA 2664	ncRNA
172706	chr4	2791051	2791630	+	0	NA	Intergenic	Intergenic	-1745	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
192335	chr6	24083351	24083450	+	0	NA	Intergenic	L1PA3|LINE|L1	-42815	NM_080723	140767		NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
88999	chr16	87955471	87955630	+	0	NA	intron (NM_001384920, intron 2 of 13)	L1MC4a|LINE|L1	4116	NM_001384935	54971		NM_017869	ENSG00000172530	BANP	BEND1|SMAR1|SMARBP1	BTG3 associated nuclear protein	protein-coding
133210	chr2	113168221	113169370	+	0	NA	Intergenic	L2c|LINE|L2	-5176	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
122866	chr19	50490271	50490680	+	0	NA	3' UTR (NM_175063, exon 8 of 8)	3' UTR (NM_175063, exon 8 of 8)	-13627	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
4439	chr1	21298901	21299450	+	0	NA	non-coding (NR_038404, exon 3 of 3)	non-coding (NR_038404, exon 3 of 3)	5885	NR_038404	100506801		NR_038404	ENSG00000231105	ECE1-AS1	-	ECE1 antisense RNA 1	ncRNA
6237	chr1	27531071	27531230	+	0	NA	Intergenic	AluY|SINE|Alu	-40983	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
49182	chr12	15289251	15289350	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-33208	NM_030667	5800		NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase receptor type O	protein-coding
206270	chr7	29580351	29580450	+	0	NA	Intergenic	L1PA2|LINE|L1	14867	NM_001329997	222171		NM_175887	ENSG00000176532	PRR15	-	proline rich 15	protein-coding
24263	chr1	236400351	236400730	+	0	NA	intron (NM_080738, intron 1 of 5)	intron (NM_080738, intron 1 of 5)	5127	NM_080738	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
210985	chr7	101990971	101991530	+	0	NA	intron (NM_001202544, intron 2 of 21)	intron (NM_001202544, intron 2 of 21)	173624	NM_181552	1523		NM_001913	ENSG00000257923	CUX1	CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75	cut like homeobox 1	protein-coding
200802	chr6	137898501	137899100	+	0	NA	Intergenic	L2b|LINE|L2	-30567	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
157344	chr22	44672871	44673180	+	0	NA	intron (NM_001017529, intron 1 of 7)	intron (NM_001017529, intron 1 of 7)	-3783	NM_001017530	55615		NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding
207965	chr7	55220471	55220780	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-31676	NR_047551	100507500		NR_047551	ENSG00000224057	EGFR-AS1	-	EGFR antisense RNA 1	ncRNA
56931	chr12	120455001	120455350	+	0	NA	intron (NR_033684, intron 3 of 4)	AluSx|SINE|Alu	8731	NR_033684	283459		NM_176818	ENSG00000257218	GATC	15E1.2|COXPD42	glutamyl-tRNA amidotransferase subunit C	protein-coding
34006	chr10	124692801	124693030	+	0	NA	intron (NM_014661, intron 3 of 4)	intron (NM_014661, intron 3 of 4)	-11113	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
71229	chr14	105171871	105172630	+	0	NA	TTS (NM_177533)	TTS (NM_177533)	-3474	NM_145159	3714		NM_002226	ENSG00000184916	JAG2	HJ2|LGMDR27|SER2	jagged canonical Notch ligand 2	protein-coding
75221	chr15	64852921	64853380	+	0	NA	intron (NM_025201, intron 2 of 5)	AluSx1|SINE|Alu	11235	NM_025201	80301		NM_025201	ENSG00000241839	PLEKHO2	PLEKHQ1|PP1628|pp9099	pleckstrin homology domain containing O2	protein-coding
133128	chr2	112662021	112663380	+	0	NA	intron (NM_005415, intron 10 of 10)	intron (NM_005415, intron 10 of 10)	16761	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
193714	chr6	31180171	31181080	+	0	NA	intron (NR_152839, intron 1 of 2).7	CpG	5692	NR_152836	100130889		NM_001134284		PSORS1C3	NCRNA00196	psoriasis susceptibility 1 candidate 3	ncRNA
141396	chr2	240836871	240837580	+	0	NA	Intergenic	Intergenic	-15822	NM_001379653	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
174759	chr4	47482271	47482630	+	0	NA	Intergenic	(TCT)n|Simple_repeat|Simple_repeat	-2825	NM_020453	57205		NM_020453	ENSG00000145246	ATP10D	ATPVD	ATPase phospholipid transporting 10D (putative)	protein-coding
117534	chr19	20659821	20660280	+	0	NA	intron (NM_145297, intron 1 of 3)	AluSp|SINE|Alu	1521	NM_001076675	199777		NM_145297	ENSG00000188171	ZNF626	-	zinc finger protein 626	protein-coding
207300	chr7	44016471	44017080	+	0	NA	intron (NR_003655, intron 1 of 15)	AluSx|SINE|Alu	2419	NR_003655	84820		NM_032734	ENSG00000214783	POLR2J4	RPB11-phi	RNA polymerase II subunit J4 (pseudogene)	pseudo
173239	chr4	6938121	6939150	+	0	NA	intron (NM_020773, intron 2 of 13)	intron (NM_020773, intron 2 of 13)	-15531	NM_001330638	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
92522	chr17	8918821	8919680	+	0	NA	intron (NM_001142633, intron 1 of 18)	L1MC4a|LINE|L1	-6733	NM_014308	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
20272	chr1	194225751	194226150	+	0	NA	Intergenic	Intergenic	921205	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
164357	chr3	58081971	58082930	+	0	NA	intron (NM_001164319, intron 4 of 44)	intron (NM_001164319, intron 4 of 44)	74028	NM_001457	2317		NM_001457	ENSG00000136068	FLNB	ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP	filamin B	protein-coding
59034	chr13	20457821	20458080	+	0	NA	intron (NM_015974, intron 3 of 7)	intron (NM_015974, intron 3 of 7)	-24104	NR_039721	100616304		NR_039721	ENSG00000263978	MIR4499	-	microRNA 4499	ncRNA
5314	chr1	25228521	25228780	+	0	NA	intron (NM_207170, intron 2 of 5)	intron (NM_207170, intron 2 of 5)	3852	NM_015484	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
82346	chr16	15956051	15956800	+	0	NA	intron (NM_004996, intron 1 of 30)	Tigger2a|DNA|TcMar-Tigger	6809	NM_004996	4363		NM_004996	ENSG00000103222	ABCC1	ABC29|ABCC|DFNA77|GS-X|MRP|MRP1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)	protein-coding
199024	chr6	111200321	111200580	+	0	NA	intron (NM_018593, intron 3 of 5)	intron (NM_018593, intron 3 of 5)	-58889	NM_153369	91749		NM_153369	ENSG00000173214	MFSD4B	KIAA1919|NaGLT1|SLC60A2	major facilitator superfamily domain containing 4B	protein-coding
91126	chr17	3698721	3698980	+	0	NA	Intergenic	LTR104_Mam|LTR|Gypsy	-2446	NR_037928	100533970		NR_037928	ENSG00000257950	P2RX5-TAX1BP3	P2RX5|P2X5	P2RX5-TAX1BP3 readthrough (NMD candidate)	ncRNA
202488	chr6	158286401	158286800	+	0	NA	Intergenic	Intergenic	-25865	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
31419	chr10	95691901	95692250	+	0	NA	intron (NM_015631, intron 3 of 13)	L2c|LINE|L2	1852	NM_015631	26123		NM_015631	ENSG00000119977	TCTN3	C10orf61|JBTS18|OFD4|TECT3	tectonic family member 3	protein-coding
41487	chr11	66240101	66240300	+	0	NA	intron (NM_018026, intron 21 of 23)	intron (NM_018026, intron 21 of 23)	-17094	NM_001134775	64837		NM_022822	ENSG00000174996	KLC2	-	kinesin light chain 2	protein-coding
35411	chr11	1397071	1397430	+	0	NA	intron (NM_001256629, intron 1 of 19)	intron (NM_001256629, intron 1 of 19)	7316	NM_003957	9024		NM_003957	ENSG00000174672	BRSK2	C11orf7|PEN11B|SAD-A|SAD1|SADA|STK29	BR serine/threonine kinase 2	protein-coding
189504	chr5	173244071	173244630	+	0	NA	Intergenic	CpG	-9144	NM_004387	1482		NM_004387	ENSG00000183072	NKX2-5	CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3	NK2 homeobox 5	protein-coding
67559	chr14	71326051	71326880	+	0	NA	intron (NM_001354287, intron 2 of 23)	AluSx|SINE|Alu	5989	NM_015556	26037		NM_015556	ENSG00000197555	SIPA1L1	E6TP1|SPAR1	signal induced proliferation associated 1 like 1	protein-coding
69946	chr14	99660901	99661100	+	0	NA	intron (NM_032425, intron 5 of 7)	intron (NM_032425, intron 5 of 7)	15871	NM_001127258	84439		NM_032425	ENSG00000182218	HHIPL1	KIAA1822|UNQ9245	HHIP like 1	protein-coding
160859	chr3	33144571	33144730	+	0	NA	3' UTR (NM_006371, exon 7 of 7)	3' UTR (NM_006371, exon 7 of 7)	30636	NM_006371	10491		NM_006371	ENSG00000170275	CRTAP	CASP|LEPREL3|OI7|P3H5	cartilage associated protein	protein-coding
202615	chr6	158737821	158738280	+	0	NA	intron (NM_001318745, intron 8 of 14)	intron (NM_001318745, intron 8 of 14)	26703	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
94983	chr17	32323501	32324300	+	0	NA	3' UTR (NM_001363836, exon 9 of 9)	3' UTR (NM_001363836, exon 9 of 9)	18273	NM_022344	64149		NM_022344	ENSG00000108666	C17orf75	NJMU-R1|SRI2	chromosome 17 open reading frame 75	protein-coding
146539	chr20	49958501	49959150	+	0	NA	Intergenic	MER65A|LTR|ERV1	22428	NM_018683	55905		NM_018683	ENSG00000124226	RNF114	PSORS12|ZNF313	ring finger protein 114	protein-coding
138803	chr2	216142651	216142950	+	0	NA	intron (NM_021141, intron 13 of 20)	intron (NM_021141, intron 13 of 20)	33452	NM_021141	7520		NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding
13598	chr1	116370401	116370800	+	0	NA	Intergenic	Intergenic	-2644	NM_000701	476		NM_000701	ENSG00000163399	ATP1A1	CMT2DD|HOMGSMR2	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
201804	chr6	150004121	150006130	+	0	NA	promoter-TSS (NR_024045)	promoter-TSS (NR_024045)	19	NR_024045	646024		NR_024045	ENSG00000290917	RAET1K	-	retinoic acid early transcript 1K (pseudogene)	pseudo
135888	chr2	171147751	171148050	+	0	NA	intron (NM_001136554, intron 1 of 20)	AluSc8|SINE|Alu	12993	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
70179	chr14	100373821	100374080	+	0	NA	intron (NM_173701, intron 1 of 10)	intron (NM_173701, intron 1 of 10)	1397	NM_213646	7453		NM_004184	ENSG00000140105	WARS1	GAMMA-2|HMN9|HMND9|IFI53|IFP53|NEDMSBA|WARS	tryptophanyl-tRNA synthetase 1	protein-coding
30906	chr10	87076621	87076950	+	0	NA	intron (NM_005271, intron 1 of 12)	intron (NM_005271, intron 1 of 12)	17302	NM_001318902	2746		NM_005271	ENSG00000148672	GLUD1	GDH|GDH1|GLUD|hGDH1	glutamate dehydrogenase 1	protein-coding
132785	chr2	109980751	109981300	+	0	NA	Intergenic	Intergenic	-5955	NR_046110	440894		NR_046110	ENSG00000204588	LINC01123	-	long intergenic non-protein coding RNA 1123	ncRNA
125478	chr2	12441801	12442200	+	0	NA	intron (NR_110196, intron 4 of 5)	MLT1A|LTR|ERVL-MaLR	242870	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
193613	chr6	30738771	30739030	+	0	NA	intron (NM_001318875, intron 7 of 11).2	Tigger17a|DNA|TcMar-Tigger	3787	NM_005803	10211		NM_005803	ENSG00000137312	FLOT1	-	flotillin 1	protein-coding
21122	chr1	203633121	203633380	+	0	NA	intron (NM_001365784, intron 1 of 20)	L1MC4a|LINE|L1	5313	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
231505	chr9	131401671	131401830	+	0	NA	intron (NM_013318, intron 1 of 31)	AluSq2|SINE|Alu	7664	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
186950	chr5	139654901	139655430	+	0	NA	intron (NM_001317205, intron 1 of 2)	intron (NM_001317205, intron 1 of 2)	4176	NM_001317205	51523		NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding
120532	chr19	44901771	44902330	+	0	NA	intron (NM_001128916, intron 9 of 9)	AluSz|SINE|Alu	-3746	NM_001302688	348		NM_000041	ENSG00000130203	APOE	AD2|APO-E|ApoE4|LDLCQ5|LPG	apolipoprotein E	protein-coding
90276	chr17	1002051	1002550	+	0	NA	3' UTR (NM_013337, exon 4 of 4)	3' UTR (NM_013337, exon 4 of 4)	5171	NM_013337	29928		NM_013337	ENSG00000177370	TIMM22	COXPD43|TEX4|TIM22	translocase of inner mitochondrial membrane 22	protein-coding
22526	chr1	222008851	222009380	+	0	NA	Intergenic	(AAGAA)n|Simple_repeat|Simple_repeat	-30595	NR_149057	105372950		NR_149057	ENSG00000238042	LINC02257	-	long intergenic non-protein coding RNA 2257	ncRNA
213102	chr7	131188151	131189750	+	0	NA	intron (NM_001145354, intron 2 of 18)	intron (NM_001145354, intron 2 of 18)	78856	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
143043	chr20	21301571	21301900	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1596	NM_012255	22803		NM_012255	ENSG00000088930	XRN2	-	5'-3' exoribonuclease 2	protein-coding
33628	chr10	119653201	119654750	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	2595	NM_004281	9531		NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BAG cochaperone 3	protein-coding
74694	chr15	62224121	62224600	+	0	NA	Intergenic	CpG	-21042	NR_148210	107984784		NR_148210	ENSG00000259697	LOC107984784	-	uncharacterized LOC107984784	ncRNA
169577	chr3	170419701	170420250	+	0	NA	intron (NM_005602, intron 1 of 2)	CpG	1107	NM_005602	5010		NM_005602	ENSG00000013297	CLDN11	HLD22|OSP|OTM	claudin 11	protein-coding
205925	chr7	25858471	25859150	+	0	NA	Intergenic	CpG	-68691	NR_157808	646588		NR_157808	ENSG00000223561	LINC03007	-	long intergenic non-protein coding RNA 3007	ncRNA
36282	chr11	3802971	3803130	+	0	NA	intron (NR_027017, intron 1 of 7)	AluSx|SINE|Alu	-4960	NR_027018	27315		NM_014489	ENSG00000148985	PGAP2	CWH43-N|FRAG1|HPMRS3|MRT17|MRT21	post-GPI attachment to proteins 2	protein-coding
59817	chr13	30408281	30409450	+	0	NA	Intergenic	Intergenic	13379	NR_125771	103724387		NR_125771		LINC01058	-	long intergenic non-protein coding RNA 1058	ncRNA
78130	chr15	90378251	90378350	+	0	NA	Intergenic	MLT1E3|LTR|ERVL-MaLR	-9942	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
172502	chr4	2256271	2257280	+	0	NA	intron (NM_006454, intron 3 of 5)	intron (NM_006454, intron 3 of 5)	5334	NM_006454	10608		NM_006454	ENSG00000123933	MXD4	MAD4|MST149|MSTP149|bHLHc12	MAX dimerization protein 4	protein-coding
96381	chr17	40111201	40112130	+	0	NA	Intergenic	Intergenic	-10306	NM_001012241	339287		NM_001012241	ENSG00000188895	MSL1	MSL-1	MSL complex subunit 1	protein-coding
66751	chr14	64515371	64515530	+	0	NA	intron (NR_110550, intron 3 of 3)	intron (NR_110550, intron 3 of 3)	-10237	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
129626	chr2	70128171	70128730	+	0	NA	Intergenic	MER45C|DNA|hAT-Tip100	-3134	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
90083	chr16	90019251	90020150	+	0	NA	promoter-TSS (NM_001042610)	promoter-TSS (NM_001042610)	71	NM_001286209	2622		NM_001481	ENSG00000141013	GAS8	CILD33|DRC4|GAS11	growth arrest specific 8	protein-coding
7350	chr1	32770251	32770550	+	0	NA	exon (NM_001198972, exon 6 of 7)	exon (NM_001198972, exon 6 of 7)	4773	NM_001198972	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
186600	chr5	138512551	138512650	+	0	NA	intron (NR_157090, intron 5 of 9)	intron (NR_157090, intron 5 of 9)	29111	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
229120	chr9	114405301	114406280	+	0	NA	intron (NM_015404, intron 9 of 11)	intron (NM_015404, intron 9 of 11)	-11385	NM_030767	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
14847	chr1	146374751	146375250	+	0	NA	Intergenic	HAL1|LINE|L1	-1807	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
143349	chr20	25859571	25860330	+	0	NA	Intergenic	SST1|Satellite|centr	-5929	NR_110001	101926935		NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA
99842	chr17	55414051	55414650	+	0	NA	intron (NM_012329, intron 1 of 6)	intron (NM_012329, intron 1 of 6)	7485	NM_012329	23531		NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding
130789	chr2	86854951	86855650	+	0	NA	intron (NM_172213, intron 2 of 5)	MIRc|SINE|MIR	-6525	NR_037931	100286979		NR_037931		ANAPC1P1	-	ANAPC1 pseudogene 1	pseudo
62438	chr13	99323771	99323930	+	0	NA	intron (NR_026644, intron 6 of 8)	intron (NR_026644, intron 6 of 8)	-16451	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
47920	chr12	6774561	6776300	+	0	NA	exon (NM_002286, exon 5 of 8)	exon (NM_002286, exon 5 of 8)	2910	NM_002286	3902		NM_002286	ENSG00000089692	LAG3	CD223	lymphocyte activating 3	protein-coding
200787	chr6	137883301	137884100	+	0	NA	TTS (NM_001270508)	TTS (NM_001270508)	-15467	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
20625	chr1	199091171	199091330	+	0	NA	Intergenic	LTR12|LTR|ERV1	-57348	NR_147896	400800		NR_147896	ENSG00000231718	LINC02789	-	long intergenic non-protein coding RNA 2789	ncRNA
217767	chr8	32554851	32554950	+	0	NA	intron (NM_001160005, intron 1 of 4)	intron (NM_001160005, intron 1 of 4)	6589	NM_001160004	3084		NM_004495	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding
216483	chr8	19815601	19815800	+	0	NA	Intergenic	AluJb|SINE|Alu	-1449	NR_148457	55174		NM_018142	ENSG00000104613	INTS10	C8orf35|INT10	integrator complex subunit 10	protein-coding
159603	chr3	15205621	15207500	+	0	NA	promoter-TSS (NR_027927)	promoter-TSS (NR_027927)	314	NM_001376089	23473		NM_014296	ENSG00000131375	CAPN7	CALPAIN7|PALBH	calpain 7	protein-coding
95613	chr17	37594471	37594830	+	0	NA	intron (NM_001163544, intron 3 of 20).2	AluSg|SINE|Alu	14768	NM_001163546	11276		NM_007247	ENSG00000275066	SYNRG	AP1GBP1|SYNG	synergin gamma	protein-coding
189165	chr5	171397801	171398080	+	0	NA	intron (NM_002520, intron 6 of 10)	AluSx1|SINE|Alu	10091	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
232111	chr9	133715721	133716100	+	0	NA	intron (NM_001134707, intron 8 of 20)	intron (NM_001134707, intron 8 of 20)	22442	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
165758	chr3	105751001	105751430	+	0	NA	intron (NM_001321813, intron 5 of 18)	intron (NM_001321813, intron 5 of 18)	116376	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
169320	chr3	159100671	159100930	+	0	NA	intron (NM_001042705, intron 1 of 4)	L1HS|LINE|L1	31481	NM_001042706	654502		NM_001042705	ENSG00000214216	IQCJ	-	IQ motif containing J	protein-coding
176070	chr4	82780851	82780950	+	0	NA	intron (NM_024906, intron 1 of 3)	intron (NM_024906, intron 1 of 3)	17896	NM_001037582	79966		NM_024906	ENSG00000145284	SCD5	ACOD4|DFNA79|FADS4|HSCD5|SCD2|SCD4	stearoyl-CoA desaturase 5	protein-coding
3427	chr1	15849201	15850930	+	0	NA	intron (NM_015001, intron 1 of 14)	intron (NM_015001, intron 1 of 14)	-1918	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
53322	chr12	64614221	64614480	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSq2|SINE|Alu	3855	NM_178169	283349		NM_178169	ENSG00000153179	RASSF3	RASSF5	Ras association domain family member 3	protein-coding
27681	chr10	33114271	33114980	+	0	NA	intron (NR_160030, intron 1 of 2)	intron (NR_160030, intron 1 of 2)	2182	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
8152	chr1	39407121	39407650	+	0	NA	intron (NM_012090, intron 52 of 92)	L3|LINE|CR1	-1688	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
159953	chr3	17227451	17227750	+	0	NA	intron (NM_001349090, intron 17 of 21)	L1PREC2|LINE|L1	294404	NR_037465	100500913		NR_037465	ENSG00000283885	MIR3714	-	microRNA 3714	ncRNA
174931	chr4	49123451	49124130	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	137148	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
9490	chr1	51234351	51234650	+	0	NA	intron (NR_147076, intron 1 of 1)	AluSz|SINE|Alu	596	NR_147076	105378716		NR_147076	ENSG00000203356	LINC01562	-	long intergenic non-protein coding RNA 1562	ncRNA
136290	chr2	174750671	174751480	+	0	NA	intron (NM_001039523, intron 7 of 9)	intron (NM_001039523, intron 7 of 9)	13397	NM_001039523	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
213474	chr7	139035511	139036380	+	0	NA	promoter-TSS (NM_080660)	promoter-TSS (NM_080660)	97	NM_080660	92092		NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding
61193	chr13	49281051	49281430	+	0	NA	intron (NM_030911, intron 8 of 9)	intron (NM_030911, intron 8 of 9)	33315	NR_036439	81602		NM_030911	ENSG00000102543	CDADC1	NYD-SP15|bA103J18.1	cytidine and dCMP deaminase domain containing 1	protein-coding
162961	chr3	49676471	49676830	+	0	NA	exon (NM_001640, exon 8 of 22)	exon (NM_001640, exon 8 of 22)	2299	NM_001640	327		NM_001640	ENSG00000164062	APEH	AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH	acylaminoacyl-peptide hydrolase	protein-coding
161914	chr3	45992201	45992450	+	0	NA	intron (NM_024513, intron 1 of 17)	intron (NM_024513, intron 1 of 17)	3499	NM_024513	79443		NM_024513	ENSG00000163820	FYCO1	CATC2|CTRCT18|RUFY3|ZFYVE7	FYVE and coiled-coil domain autophagy adaptor 1	protein-coding
40762	chr11	64850771	64852630	+	0	NA	TTS (NM_006795)	TTS (NM_006795)	-7047	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
87227	chr16	69570801	69571350	+	0	NA	intron (NM_138713, intron 2 of 14)	AluSz|SINE|Alu	5109	NM_173215	10725		NM_006599	ENSG00000102908	NFAT5	NF-AT5|NFATL1|NFATZ|OREBP|TONEBP	nuclear factor of activated T cells 5	protein-coding
198278	chr6	99612451	99612750	+	0	NA	intron (NM_021620, intron 3 of 3)	intron (NM_021620, intron 3 of 3)	5767	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
141368	chr2	240686651	240686950	+	0	NA	non-coding (NR_149021, exon 1 of 3)	non-coding (NR_149021, exon 1 of 3)	466	NR_149021	285191		NR_149021		LOC285191	-	uncharacterized LOC285191	ncRNA
30337	chr10	77281571	77282130	+	0	NA	intron (NM_001271518, intron 1 of 27)	L1MB8|LINE|L1	68911	NM_001322838	3778		NM_002247	ENSG00000156113	KCNMA1	BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding
224157	chr9	4944401	4944880	+	0	NA	Intergenic	Intergenic	-40446	NM_001322195	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
29846	chr10	72344451	72344550	+	0	NA	intron (NR_157570, intron 2 of 8)	intron (NR_157570, intron 2 of 8)	10419	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
159704	chr3	15629951	15630830	+	0	NA	intron (NM_001281724, intron 2 of 5)	intron (NM_001281724, intron 2 of 5)	28421	NM_001281725	686		NM_001281723	ENSG00000169814	BTD	-	biotinidase	protein-coding
107011	chr18	32072051	32072700	+	0	NA	3' UTR (NM_017831, exon 6 of 6)	3' UTR (NM_017831, exon 6 of 6)	-19499	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
217510	chr8	29171021	29171530	+	0	NA	intron (NM_015254, intron 10 of 39)	intron (NM_015254, intron 10 of 39)	91795	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
83209	chr16	23595471	23596830	+	0	NA	exon (NM_005003, exon 1 of 5)	exon (NM_005003, exon 1 of 5)	166	NM_005003	4706		NM_005003	ENSG00000004779	NDUFAB1	ACP|ACP1|FASN2A|SDAP	NADH:ubiquinone oxidoreductase subunit AB1	protein-coding
11832	chr1	92882801	92884130	+	0	NA	intron (NM_001006605, intron 1 of 4)	MLT1F|LTR|ERVL-MaLR	-6315	NM_001252271	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
123205	chr19	52720451	52720550	+	0	NA	intron (NM_030972, intron 3 of 6)	SVA_A|Retroposon|SVA	9382	NM_030972	81856		NM_030972	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
231164	chr9	129883871	129885300	+	0	NA	Intergenic	Intergenic	14980	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
226821	chr9	77488601	77488800	+	0	NA	intron (NR_121184, intron 2 of 4)	L1M3f|LINE|L1	41051	NR_121184	101927422		NR_121184	ENSG00000231373	GNA14-AS1	-	GNA14 antisense RNA 1	ncRNA
108163	chr18	62784421	62785130	+	0	NA	intron (NM_194449, intron 1 of 16)	intron (NM_194449, intron 1 of 16)	69234	NM_194449	23239		NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
162855	chr3	49341771	49342100	+	0	NA	Intergenic	Intergenic	-1882	NM_001251877	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
80794	chr16	3273571	3273730	+	0	NA	Intergenic	Intergenic	-9841	NM_005741	10127		NM_005741	ENSG00000006194	ZNF263	FPM315|ZKSCAN12|ZSCAN44	zinc finger protein 263	protein-coding
168984	chr3	152406051	152407000	+	0	NA	intron (NM_001314057, intron 3 of 11)	intron (NM_001314057, intron 3 of 11)	-65535	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
199942	chr6	127910301	127910500	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	8231	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
2134	chr1	8348721	8349780	+	0	NA	Intergenic	Intergenic	31136	NM_001379617	50651		NM_001080397	ENSG00000162426	SLC45A1	DNB5|IDDNPF|PAST-A	solute carrier family 45 member 1	protein-coding
9000	chr1	44678171	44678330	+	0	NA	intron (NM_001145636, intron 1 of 11)	intron (NM_001145636, intron 1 of 11)	3536	NM_001145636	339541		NM_001004307	ENSG00000198520	ARMH1	C1orf228|NCRNA00082|p40	armadillo like helical domain containing 1	protein-coding
211006	chr7	102306801	102307400	+	0	NA	intron (NM_001359228, intron 3 of 8)	intron (NM_001359228, intron 3 of 8)	13997	NR_036245	100422858		NR_036245	ENSG00000264675	MIR4285	-	microRNA 4285	ncRNA
200619	chr6	136783621	136784350	+	0	NA	promoter-TSS (NR_134635)	promoter-TSS (NR_134635)	-62	NR_134635	101928429		NR_134635		MAP3K5-AS2	-	MAP3K5 antisense RNA 2	ncRNA
130617	chr2	85998121	85998600	+	0	NA	Intergenic	Intergenic	107526	NM_015425	25885		NM_015425	ENSG00000068654	POLR1A	A190|AFDCIN|HLD27|RPA1|RPA190|RPA194|RPO1-4|RPO14	RNA polymerase I subunit A	protein-coding
114180	chr19	11385751	11386150	+	0	NA	Intergenic	AluSq4|SINE|Alu	-1636	NR_033663	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
4295	chr1	20059971	20060330	+	0	NA	Intergenic	Intergenic	-10044	NM_000929	5322		NM_000929	ENSG00000127472	PLA2G5	FRFB|GV-PLA2|PLA2-10|hVPLA(2)	phospholipase A2 group V	protein-coding
76807	chr15	77034721	77035850	+	0	NA	intron (NM_001321136, intron 13 of 15)	intron (NM_001321136, intron 13 of 15)	35824	NM_005724	10099		NM_005724	ENSG00000140391	TSPAN3	TM4-A|TM4SF8|TSPAN-3	tetraspanin 3	protein-coding
46506	chr11	128417351	128417850	+	0	NA	Intergenic	Intergenic	104710	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
73583	chr15	44529471	44529830	+	0	NA	TTS (NM_016396)	TTS (NM_016396)	7250	NR_034171	645212		NR_034170	ENSG00000179523	EIF3J-DT	EIF3J-AS1	EIF3J divergent transcript	ncRNA
214686	chr7	150973301	150975530	+	0	NA	intron (NM_172056, intron 2 of 8)	intron (NM_172056, intron 2 of 8)	3899	NM_172056	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
32062	chr10	101075821	101076280	+	0	NA	Intergenic	Intergenic	9667	NR_135068	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
106638	chr18	22505001	22505200	+	0	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	-87185	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
77054	chr15	78873401	78874100	+	0	NA	intron (NM_001265604, intron 1 of 11)	intron (NM_001265604, intron 1 of 11)	761	NM_001265604	10933		NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding
81966	chr16	11868171	11868430	+	0	NA	3' UTR (NM_002094, exon 15 of 15)	3' UTR (NM_002094, exon 15 of 15)	-16758	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
212710	chr7	129784371	129785130	+	0	NA	Intergenic	Intergenic	-9736	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
190682	chr5	181441551	181441650	+	0	NA	Intergenic	Intergenic	74313	NM_001005221	729759		NM_001005221	ENSG00000284733	OR4F29	OR7-21	olfactory receptor family 4 subfamily F member 29	protein-coding
166292	chr3	112531271	112531830	+	0	NA	TTS (NM_001278712)	TTS (NM_001278712)	-29770	NM_001348906	55032		NM_017945	ENSG00000138459	SLC35A5	-	solute carrier family 35 member A5	protein-coding
38170	chr11	36313051	36313350	+	0	NA	intron (NM_001160167, intron 1 of 8)	intron (NM_001160167, intron 1 of 8)	16912	NM_001160167	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
204611	chr7	5362151	5362250	+	0	NA	intron (NM_001080495, intron 12 of 29)	intron (NM_001080495, intron 12 of 29)	61346	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
6286	chr1	27606371	27607480	+	0	NA	Intergenic	Intergenic	-2781	NM_001371928	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
139322	chr2	219547271	219548630	+	0	NA	exon (NM_001005209, exon 3 of 5)	exon (NM_001005209, exon 3 of 5)	1197	NR_036082	100423039		NR_036082	ENSG00000265252	MIR3132	-	microRNA 3132	ncRNA
77542	chr15	84744421	84745030	+	0	NA	Intergenic	MER112|DNA|hAT-Charlie	-3867	NM_014630	9640		NM_014630	ENSG00000166716	ZNF592	CAMOS|SCAR5	zinc finger protein 592	protein-coding
208334	chr7	66222321	66222580	+	0	NA	intron (NM_003596, intron 1 of 5)	intron (NM_003596, intron 1 of 5)	17116	NM_003596	8460		NM_003596	ENSG00000169902	TPST1	TANGO13A	tyrosylprotein sulfotransferase 1	protein-coding
131333	chr2	96141991	96143770	+	0	NA	TTS (NM_004418)	TTS (NM_004418)	2560	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
226243	chr9	66701901	66702300	+	0	NA	Intergenic	Intergenic	-198625	NM_033160	26149		NM_033160	ENSG00000274349	ZNF658	-	zinc finger protein 658	protein-coding
78721	chr15	98648001	98649200	+	0	NA	promoter-TSS (NM_001291858)	promoter-TSS (NM_001291858)	61	NM_000875	3480		NM_000875	ENSG00000140443	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin like growth factor 1 receptor	protein-coding
100066	chr17	58172271	58172680	+	0	NA	Intergenic	L1M4|LINE|L1	2819	NM_001004707	124538		NM_001004707	ENSG00000255713	OR4D2	BC2009|OR17-24	olfactory receptor family 4 subfamily D member 2	protein-coding
226327	chr9	69120871	69122330	+	0	NA	5' UTR (NM_001369870, exon 1 of 24)	5' UTR (NM_001369870, exon 1 of 24)	101	NM_001369870	9414		NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|FHCA1|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
117086	chr19	19136771	19137230	+	0	NA	intron (NM_017814, intron 1 of 11)	intron (NM_017814, intron 1 of 11)	1478	NM_017814	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
208001	chr7	55531901	55532300	+	0	NA	intron (NM_001321243, intron 1 of 5)	intron (NM_001321243, intron 1 of 5)	-5220	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
222002	chr8	130014801	130015700	+	0	NA	intron (NM_001353269, intron 1 of 10)	L2a|LINE|L2	1310	NM_001353262	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
118500	chr19	35947071	35948330	+	0	NA	intron (NR_136525, intron 1 of 4)	AluSc8|SINE|Alu	585	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
30139	chr10	74081071	74081500	+	0	NA	intron (NM_014000, intron 6 of 21)	intron (NM_014000, intron 6 of 21)	69543	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
219308	chr8	70074371	70074530	+	0	NA	Intergenic	AluJb|SINE|Alu	-3198	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
63310	chr13	113995371	113995530	+	0	NA	intron (NM_001320822, intron 21 of 23).2	intron (NM_001320822, intron 21 of 23).2	-21374	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
201210	chr6	143536151	143537900	+	0	NA	Intergenic	CpG	25026	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
122659	chr19	49863671	49863830	+	0	NA	exon (NM_007254, exon 8 of 17)	exon (NM_007254, exon 8 of 17)	3826	NM_007254	11284		NM_007254	ENSG00000039650	PNKP	AOA4|CMT2B2|EIEE10|MCSZ|PNK	polynucleotide kinase 3'-phosphatase	protein-coding
84768	chr16	30983571	30984280	+	0	NA	exon (NM_014712, exon 19 of 19)	exon (NM_014712, exon 19 of 19)	-1282	NM_025193	80270		NM_025193	ENSG00000099377	HSD3B7	CBAS1|PFIC4|SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding
56045	chr12	110467671	110468800	+	0	NA	promoter-TSS (NM_001164373)	promoter-TSS (NM_001164373)	22	NM_016301	51184		NM_016301	ENSG00000111231	GPN3	ATPBD1C	GPN-loop GTPase 3	protein-coding
194447	chr6	33169301	33169730	+	0	NA	intron (NM_080680, intron 50 of 65).6	intron (NM_080680, intron 50 of 65).6	22952	NM_080681	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
223835	chr8	145019801	145020300	+	0	NA	Intergenic	HERVK14C-int|LTR|ERVK	-17151	NR_023392	286101		NR_023392		ZNF252P	ZNF252	zinc finger protein 252, pseudogene	pseudo
211494	chr7	105213701	105213900	+	0	NA	intron (NM_001350741, intron 2 of 16)	intron (NM_001350741, intron 2 of 16)	55277	NM_001350745	6733		NM_182691	ENSG00000135250	SRPK2	SFRSK2	SRSF protein kinase 2	protein-coding
186422	chr5	135804001	135804200	+	0	NA	intron (NM_001349345, intron 3 of 9)	SATR1|Satellite|Satellite	-1025	NR_049867	100847082		NR_049867	ENSG00000265924	MIR5692C1	-	microRNA 5692c-1	ncRNA
57102	chr12	121059551	121061180	+	0	NA	Intergenic	Intergenic	-21123	NM_198213	8638		NM_003733	ENSG00000135114	OASL	OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL	2'-5'-oligoadenylate synthetase like	protein-coding
85483	chr16	50708201	50709400	+	0	NA	intron (NR_163434, intron 3 of 12)	intron (NR_163434, intron 3 of 12)	9420	NM_001293557	64127		NM_022162	ENSG00000167207	NOD2	ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS	nucleotide binding oligomerization domain containing 2	protein-coding
31843	chr10	99682951	99683130	+	0	NA	intron (NM_001349962, intron 6 of 13)	intron (NM_001349962, intron 6 of 13)	23411	NM_001349963	57089		NM_020354	ENSG00000198018	ENTPD7	LALP1	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
212567	chr7	128890471	128891780	+	0	NA	intron (NM_199349, intron 19 of 20)	CpG-26383	19584	NM_001366122	375616		NM_199349	ENSG00000135253	KCP	CRIM2|KCP1|NET67	kielin cysteine rich BMP regulator	protein-coding
170939	chr3	194323951	194325780	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-12061	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
148407	chr20	63944301	63944700	+	0	NA	intron (NR_148442, intron 6 of 15)	CpG-18141	-1774	NR_030377	693232		NR_030377	ENSG00000207554	MIR647	MIRN647|hsa-mir-647	microRNA 647	ncRNA
173167	chr4	6694521	6695130	+	0	NA	intron (NM_005980, intron 1 of 1)	intron (NM_005980, intron 1 of 1)	947	NM_005980	6286		NM_005980	ENSG00000163993	S100P	MIG9	S100 calcium binding protein P	protein-coding
208280	chr7	65974971	65975130	+	0	NA	exon (NM_001284290, exon 4 of 10)	exon (NM_001284290, exon 4 of 10)	7163	NM_001284290	2990		NM_000181	ENSG00000169919	GUSB	BG|MPS7	glucuronidase beta	protein-coding
113426	chr19	9789821	9790730	+	0	NA	intron (NR_148545, intron 1 of 1)	LTR5B|LTR|ERVK	2905	NR_148545	100505555		NR_148545	ENSG00000196605	LOC100505555	-	uncharacterized LOC100505555	ncRNA
134781	chr2	147623151	147623650	+	0	NA	Intergenic	Intergenic	-221117	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
122909	chr19	50604571	50604950	+	0	NA	promoter-TSS (NR_004384)	promoter-TSS (NR_004384)	-203	NR_004384	100126781		NR_004384		SNAR-F	-	small NF90 (ILF3) associated RNA F	snRNA
25604	chr10	8059901	8060670	+	0	NA	intron (NM_002051, intron 3 of 5)	intron (NM_002051, intron 3 of 5)	5597	NM_001002295	2625		NM_002051	ENSG00000107485	GATA3	HDR|HDRS	GATA binding protein 3	protein-coding
156315	chr22	40636021	40638100	+	0	NA	promoter-TSS (NM_001282662)	promoter-TSS (NM_001282662)	-341	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
116395	chr19	17961921	17962380	+	0	NA	intron (NM_002248, intron 2 of 10)	intron (NM_002248, intron 2 of 10)	10848	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
3475	chr1	15965071	15965450	+	0	NA	intron (NM_001324138, intron 2 of 14)	L1ME3F|LINE|L1	10841	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
149066	chr21	15592301	15592600	+	0	NA	Intergenic	Intergenic	-137484	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
78883	chr15	100627751	100628230	+	0	NA	intron (NM_198243, intron 4 of 5)	intron (NM_198243, intron 4 of 5)	25401	NM_198243	140460		NM_024708	ENSG00000183475	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding
84539	chr16	30535701	30536680	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1220	NM_023931	65988		NM_023931	ENSG00000169955	ZNF747	-	zinc finger protein 747	protein-coding
214263	chr7	148964601	148965180	+	0	NA	Intergenic	AluSx1|SINE|Alu	1575	NR_004393	6086		NR_004393	ENSG00000252316	RNY4	HY4|Y4	RNA, Ro60-associated Y4	ncRNA
197981	chr6	90035451	90035550	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	141031	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
16950	chr1	155928571	155928730	+	0	NA	intron (NM_014949, intron 4 of 13)	intron (NM_014949, intron 4 of 13)	-2564	NR_003005	677771		NR_003005	ENSG00000281394	SCARNA4	ACA26	small Cajal body-specific RNA 4	ncRNA
90756	chr17	2046701	2047300	+	0	NA	Intergenic	AluJr|SINE|Alu	3008	NR_029674	406921		NR_029674	ENSG00000267200	MIR132	MIRN132|miRNA132|mir-132	microRNA 132	ncRNA
52077	chr12	54045971	54046330	+	0	NA	intron (NM_014620, intron 1 of 3)	intron (NM_014620, intron 1 of 3)	-7685	NM_153633	3221		NM_014620	ENSG00000198353	HOXC4	HOX3|HOX3E|cp19	homeobox C4	protein-coding
209518	chr7	77001251	77001350	+	0	NA	intron (NR_023383, intron 3 of 10)	intron (NR_023383, intron 3 of 10)	20478	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
91058	chr17	3001921	3002180	+	0	NA	intron (NM_001100398, intron 13 of 23)	AluSg7|SINE|Alu	-36155	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
219971	chr8	89759071	89759700	+	0	NA	intron (NM_001375360, intron 1 of 9)	intron (NM_001375360, intron 1 of 9)	1569	NM_003821	8767		NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor interacting serine/threonine kinase 2	protein-coding
112633	chr19	6779301	6779680	+	0	NA	intron (NM_005428, intron 1 of 26)	L1MC4a|LINE|L1	6782	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
120655	chr19	45083601	45084000	+	0	NA	intron (NM_001007270, intron 2 of 2)	AluJb|SINE|Alu	4540	NM_001007269	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
151430	chr21	46130171	46130330	+	0	NA	TTS (NM_058175)	TTS (NM_058175)	-21125	NM_001350598	100861507		NM_001350598	ENSG00000237338	FTCD-AS1	-	FTCD antisense RNA 1	ncRNA
101234	chr17	66193321	66193580	+	0	NA	Intergenic	Intergenic	-1317	NM_001199165	201134		NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO|SPGF44	centrosomal protein 112	protein-coding
164965	chr3	71274221	71274680	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-15308	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
137585	chr2	197272001	197272280	+	0	NA	intron (NR_046837, intron 5 of 5)	MLT1A0|LTR|ERVL-MaLR	30379	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
172935	chr4	3515851	3515950	+	0	NA	intron (NR_110005, intron 6 of 7)	intron (NR_110005, intron 6 of 7)	16249	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
181818	chr5	52774021	52774730	+	0	NA	Intergenic	Intergenic	-13541	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
238233	chrX	140765101	140765300	+	0	NA	intron (NR_104228, intron 3 of 3)	intron (NR_104228, intron 3 of 3)	19358	NM_004065	1038		NM_004065		CDR1	CDR|CDR34|CDR62A	cerebellar degeneration related 1	unknown
60386	chr13	40945951	40946730	+	0	NA	intron (NM_001370329, intron 6 of 9)	L1MA10|LINE|L1	-24566	NR_003365	283507		NR_003365	ENSG00000290464	SUGT1P3	SUGT1L1	SUGT1 pseudogene 3	pseudo
18191	chr1	160838951	160839700	+	0	NA	intron (NM_001166664, intron 2 of 7)	MIRb|SINE|MIR	23562	NM_001166663	51744		NM_016382	ENSG00000122223	CD244	2B4|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 molecule	protein-coding
223769	chr8	144532071	144532350	+	0	NA	intron (NM_001308207, intron 10 of 11)	intron (NM_001308207, intron 10 of 11)	-3099	NM_001001795	414919		NM_001001795	ENSG00000213563	C8orf82	-	chromosome 8 open reading frame 82	protein-coding
231932	chr9	133117371	133117530	+	0	NA	intron (NM_001042368, intron 1 of 17)	intron (NM_001042368, intron 1 of 17)	3790	NM_001271776	5900		NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding
229674	chr9	124477721	124477980	+	0	NA	Intergenic	CpG	29549	NM_004959	2516		NM_004959	ENSG00000136931	NR5A1	AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1	nuclear receptor subfamily 5 group A member 1	protein-coding
120905	chr19	45599351	45599780	+	0	NA	intron (NM_005282, intron 1 of 1)	intron (NM_005282, intron 1 of 1)	2647	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
66271	chr14	61371421	61371680	+	0	NA	intron (NM_006255, intron 1 of 13)	L1MC3|LINE|L1	50107	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
141431	chr2	240999951	241000650	+	0	NA	intron (NM_001080437, intron 1 of 31)	intron (NM_001080437, intron 1 of 31)	1682	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
127862	chr2	45654151	45655000	+	0	NA	intron (NM_005400, intron 1 of 14)	intron (NM_005400, intron 1 of 14)	2900	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
70377	chr14	101905421	101905950	+	0	NA	intron (NM_178587, intron 9 of 11)	intron (NM_178587, intron 9 of 11)	-58888	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
18898	chr1	168338851	168339230	+	0	NA	Intergenic	MER57A-int|LTR|ERV1	-36484	NR_030284	693142		NR_030284	ENSG00000207974	MIR557	MIRN557|hsa-mir-557	microRNA 557	ncRNA
234115	chrX	9538671	9538830	+	0	NA	intron (NM_001139468, intron 3 of 17)	intron (NM_001139468, intron 3 of 17)	73692	NM_005647	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
188888	chr5	159933451	159934300	+	0	NA	intron (NM_000679, intron 1 of 1)	intron (NM_000679, intron 1 of 1)	17393	NM_000679	147		NM_000679	ENSG00000170214	ADRA1B	ADRA1|ALPHA1BAR	adrenoceptor alpha 1B	protein-coding
177702	chr4	121951001	121952180	+	0	NA	exon (NM_001130698, exon 1 of 12)	exon (NM_001130698, exon 1 of 12)	470	NM_001366479	7222		NM_003305	ENSG00000138741	TRPC3	SCA41|TRP3	transient receptor potential cation channel subfamily C member 3	protein-coding
33446	chr10	119033921	119034330	+	0	NA	TTS (NM_199461)	TTS (NM_199461)	4411	NM_199461	340719		NM_199461	ENSG00000188613	NANOS1	EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A	nanos C2HC-type zinc finger 1	protein-coding
185803	chr5	132429901	132430330	+	0	NA	intron (NR_161242, intron 2 of 3)	LTR33|LTR|ERVL	19186	NR_161242	441108		NM_001013717		CARINH	C5orf56|IRF1-AS1	colitis associated IRF1 antisense regulator of intestinal homeostasis	ncRNA
192470	chr6	24929351	24930450	+	0	NA	intron (NM_001286446, intron 1 of 13)	AluJr|SINE|Alu	6060	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
149098	chr21	16197101	16197300	+	0	NA	intron (NR_136543, intron 1 of 4)	intron (NR_136543, intron 1 of 4)	2821	NR_027791	388815		NR_027790	ENSG00000215386	MIR99AHG	C21orf34|C21orf35|DILA1|LINC00478|MONC	mir-99a-let-7c cluster host gene	ncRNA
164851	chr3	71049751	71049850	+	0	NA	intron (NM_001244812, intron 4 of 15)	intron (NM_001244812, intron 4 of 15)	15124	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
70668	chr14	103074651	103075000	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	-9385	NM_001330236	107984640		NM_001330236	ENSG00000283071	LBHD2	-	LBH domain containing 2	protein-coding
8540	chr1	41024401	41024600	+	0	NA	intron (NR_037868, intron 1 of 3)	intron (NR_037868, intron 1 of 3)	-2745	NM_001168247	200172		NM_144990	ENSG00000171790	SLFNL1	-	schlafen like 1	protein-coding
20752	chr1	200983151	200983680	+	0	NA	intron (NM_001252102, intron 27 of 34)	intron (NM_001252102, intron 27 of 34)	40299	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
155101	chr22	37601571	37601930	+	0	NA	Intergenic	Intergenic	-6724	NM_001172687	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
43424	chr11	77477001	77477450	+	0	NA	Intergenic	MER6A|DNA|TcMar-Tigger	-3131	NM_001128620	5058		NM_002576	ENSG00000149269	PAK1	IDDMSSD|PAKalpha|alpha-PAK|p65-PAK	p21 (RAC1) activated kinase 1	protein-coding
7423	chr1	32960171	32960730	+	0	NA	intron (NM_001127361, intron 1 of 8)	intron (NM_001127361, intron 1 of 8)	4359	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
101380	chr17	67295051	67295480	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-50069	NM_001330447	9931		NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
112734	chr19	7347701	7347980	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-1097	NM_001367823	23370		NM_015318	ENSG00000104880	ARHGEF18	P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF	Rho/Rac guanine nucleotide exchange factor 18	protein-coding
45945	chr11	121329021	121329450	+	0	NA	Intergenic	L2b|LINE|L2	36367	NM_001024956	6309		NM_006918	ENSG00000109929	SC5D	ERG3|S5DES|SC5DL	sterol-C5-desaturase	protein-coding
237813	chrX	129956101	129956300	+	0	NA	Intergenic	L2b|LINE|L2	-24779	NM_001184772	63035		NM_021946	ENSG00000085185	BCORL1	BCoR-L1|CXorf10|SHUVER	BCL6 corepressor like 1	protein-coding
170751	chr3	188368601	188368800	+	0	NA	intron (NM_001167671, intron 3 of 11)	(AC)n|Simple_repeat|Simple_repeat	155804	NM_005578	4026		NM_005578	ENSG00000145012	LPP	-	LIM domain containing preferred translocation partner in lipoma	protein-coding
221748	chr8	127739621	127740080	+	0	NA	intron (NM_001354870, intron 2 of 2)	intron (NM_001354870, intron 2 of 2)	3619	NM_002467	4609		NM_002467	ENSG00000136997	MYC	MRTL|MYCC|bHLHe39|c-Myc	MYC proto-oncogene, bHLH transcription factor	protein-coding
53092	chr12	57746171	57746980	+	0	NA	intron (NM_001330169, intron 3 of 5)	intron (NM_001330169, intron 3 of 5)	1536	NM_001330169	6302		NM_005981	ENSG00000135452	TSPAN31	SAS	tetraspanin 31	protein-coding
166127	chr3	111323951	111324700	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-217872	NM_001318889	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
17573	chr1	156837221	156837680	+	0	NA	intron (NM_001007792, intron 1 of 16)	intron (NM_001007792, intron 1 of 16)	-20602	NM_001161441	9047		NM_003975	ENSG00000027869	SH2D2A	F2771|SCAP|TSAD|VRAP	SH2 domain containing 2A	protein-coding
7880	chr1	36448601	36449000	+	0	NA	intron (NM_001330493, intron 1 of 10)	L2c|LINE|L2	1651	NM_145047	127700		NM_145047	ENSG00000116885	OSCP1	C1orf102|NOR1	organic solute carrier partner 1	protein-coding
145100	chr20	38730101	38730400	+	0	NA	TTS (NM_080552)	TTS (NM_080552)	5764	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
228856	chr9	112321801	112322500	+	0	NA	intron (NM_001375918, intron 1 of 13)	AluSc|SINE|Alu	10876	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
226570	chr9	72479801	72480000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-41708	NM_138691	117531		NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding
229773	chr9	125201571	125201730	+	0	NA	intron (NM_001174153, intron 2 of 7)	AluSc|SINE|Alu	1108	NM_001174153	10244		NM_005833	ENSG00000136933	RABEPK	RAB9P40|bA65N13.1|p40	Rab9 effector protein with kelch motifs	protein-coding
131039	chr2	88201101	88201300	+	0	NA	Intergenic	LTR16A|LTR|ERVL	30854	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
201037	chr6	142057871	142058030	+	0	NA	Intergenic	Intergenic	-75209	NM_001358410	100126572		NM_001358410	ENSG00000203733	GJE1	CX23	gap junction protein epsilon 1	protein-coding
143376	chr20	26752051	26752150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-542867	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
108310	chr18	63408771	63408930	+	0	NA	intron (NM_004869, intron 3 of 10)	intron (NM_004869, intron 3 of 10)	13626	NM_004869	9525		NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding
110864	chr19	2618071	2618910	+	0	NA	intron (NM_052847, intron 2 of 4)	AluSz|SINE|Alu	-12225	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
100098	chr17	58319951	58320480	+	0	NA	intron (NM_001261835, intron 11 of 31)	intron (NM_001261835, intron 11 of 31)	-5235	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
86884	chr16	67989171	67989530	+	0	NA	non-coding (NR_136706, exon 10 of 12)	non-coding (NR_136706, exon 10 of 12)	4044	NM_001369657	64174		NM_022355	ENSG00000167261	DPEP2	MBD2	dipeptidase 2	protein-coding
35150	chr11	734371	735280	+	0	NA	Intergenic	CpG	-12639	NM_006755	6888		NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding
2296	chr1	8968851	8969150	+	0	NA	intron (NM_001270502, intron 4 of 5)	AluSx1|SINE|Alu	23132	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
107884	chr18	56646521	56647200	+	0	NA	Intergenic	AluSz|SINE|Alu	-4499	NM_015285	23335		NM_015285	ENSG00000091157	WDR7	TRAG	WD repeat domain 7	protein-coding
107005	chr18	32058021	32058530	+	0	NA	intron (NM_017831, intron 4 of 5)	L1MA3|LINE|L1	-33599	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
183676	chr5	80651121	80652080	+	0	NA	promoter-TSS (NM_001190470)	promoter-TSS (NM_001190470)	-592	NM_001190470	100462981		NM_001190470		MTRNR2L2	HN2	MT-RNR2 like 2 (pseudogene)	pseudo
27666	chr10	33049621	33050780	+	0	NA	Intergenic	LTR12C|LTR|ERV1	66607	NR_160030	101929447		NR_160030		IATPR	TCONS_00018476|linc-ITGB1	ITGB1 adjacent tumor promoting lncRNA	ncRNA
23340	chr1	228121071	228121440	+	0	NA	Intergenic	MER57A1|LTR|ERV1	-11943	NM_001321284	128308		NM_181441	ENSG00000162910	MRPL55	AAVG5835|L55nt|MRP-L55|PRO19675|bL31m	mitochondrial ribosomal protein L55	protein-coding
123211	chr19	52742421	52743230	+	0	NA	Intergenic	Intergenic	-7771	NM_001161500	81856		NM_030972	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
226758	chr9	76415771	76416130	+	0	NA	Intergenic	Intergenic	17351	NR_026890	653162		NR_026890		RPSAP9	LAMR1P9|RPSA_20_986	ribosomal protein SA pseudogene 9	pseudo
211239	chr7	102648601	102648800	+	0	NA	intron (NM_032959, intron 4 of 8)	AluSq2|SINE|Alu	-1625	NM_001166339	100310812		NM_001166339	ENSG00000173678	SPDYE2B	SPDYE2L	speedy/RINGO cell cycle regulator family member E2B	protein-coding
227148	chr9	86303171	86303930	+	0	NA	intron (NM_024617, intron 24 of 26)	intron (NM_024617, intron 24 of 26)	-21012	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
205796	chr7	23894321	23895400	+	0	NA	Intergenic	Intergenic	184641	NM_031414	56164		NM_031414	ENSG00000196335	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
73048	chr15	40886621	40886880	+	0	NA	Intergenic	Intergenic	-7700	NM_020857	57617		NM_020857	ENSG00000104142	VPS18	PEP3	VPS18 core subunit of CORVET and HOPS complexes	protein-coding
116672	chr19	18396351	18397000	+	0	NA	exon (NM_145256, exon 1 of 2)	exon (NM_145256, exon 1 of 2)	947	NM_145256	126364		NM_145256	ENSG00000175489	LRRC25	MAPA	leucine rich repeat containing 25	protein-coding
40996	chr11	65401001	65401400	+	0	NA	intron (NM_001300832, intron 8 of 9)	intron (NM_001300832, intron 8 of 9)	14563	NM_001300833	83786		NM_031904	ENSG00000126391	FRMD8	FKSG44|iTAP	FERM domain containing 8	protein-coding
7826	chr1	36303821	36304400	+	0	NA	3' UTR (NM_001321473, exon 12 of 12)	3' UTR (NM_001321473, exon 12 of 12)	-2258	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
127998	chr2	46983321	46983580	+	0	NA	intron (NM_020458, intron 5 of 19)	intron (NM_020458, intron 5 of 19)	-41595	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
217889	chr8	37876371	37876930	+	0	NA	intron (NM_025151, intron 2 of 4)	AluJb|SINE|Alu	22847	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
66470	chr14	61562551	61563150	+	0	NA	non-coding (NR_110416, exon 4 of 5)	non-coding (NR_110416, exon 4 of 5)	7344	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
118033	chr19	34224101	34224500	+	0	NA	intron (NM_001384420, intron 9 of 9).2	AluSx|SINE|Alu	-30254	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
200869	chr6	138787171	138787330	+	0	NA	intron (NM_015439, intron 4 of 5)	MLT1A0|LTR|ERVL-MaLR	-8861	NM_001195037	345930		NM_001077706	ENSG00000203734	ECT2L	ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5	epithelial cell transforming 2 like	protein-coding
179991	chr5	897871	898030	+	0	NA	intron (NM_001166260, intron 3 of 8)	intron (NM_001166260, intron 3 of 8)	5066	NM_004237	9319		NM_004237	ENSG00000071539	TRIP13	16E1BP|MVA3|OOMD9|OZEMA9	thyroid hormone receptor interactor 13	protein-coding
130867	chr2	87404401	87405300	+	0	NA	Intergenic	AluSx3|SINE|Alu	-50577	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
12789	chr1	109773351	109774200	+	0	NA	Intergenic	Intergenic	-9852	NM_001319952	79574		NM_024526	ENSG00000198758	EPS8L3	EPS8R3|HYPT5	EPS8 signaling adaptor L3	protein-coding
55853	chr12	109142801	109143280	+	0	NA	intron (NM_001093, intron 2 of 52)	intron (NM_001093, intron 2 of 52)	26453	NM_001093	32		NM_001093	ENSG00000076555	ACACB	ACACbeta|ACC-beta|ACC2|ACCB|ACCbeta|HACC275	acetyl-CoA carboxylase beta	protein-coding
113782	chr19	10547651	10548400	+	0	NA	intron (NR_104024, intron 5 of 9)	AluSc8|SINE|Alu	-4097	NR_031603	100302226		NR_031603	ENSG00000221410	MIR1238	MIRN1238|hsa-mir-1238	microRNA 1238	ncRNA
14652	chr1	145675321	145676180	+	0	NA	intron (NM_001371361, intron 5 of 7)	AluSz|SINE|Alu	31618	NM_001371361	5174		NM_002614	ENSG00000174827	PDZK1	CAP70|CLAMP|NHERF-3|NHERF3|PDZD1	PDZ domain containing 1	protein-coding
72087	chr15	28913421	28913880	+	0	NA	intron (NM_001379685, intron 2 of 15)	intron (NM_001379685, intron 2 of 15)	-7987	NM_005503	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
184484	chr5	100841401	100842430	+	0	NA	intron (NM_005668, intron 4 of 4)	intron (NM_005668, intron 4 of 4)	-25350	NR_031686	100302288		NR_031686	ENSG00000221263	MIR548P	MIRN548P|hsa-mir-548p	microRNA 548p	ncRNA
97662	chr17	44209821	44211080	+	0	NA	exon (NM_014233, exon 14 of 21)	exon (NM_014233, exon 14 of 21)	-2611	NR_106840	102465469		NR_106840	ENSG00000275107	MIR6782	hsa-mir-6782	microRNA 6782	ncRNA
62283	chr13	98869521	98869780	+	0	NA	intron (NM_001318849, intron 27 of 54)	MLT1J|LTR|ERVL-MaLR	37566	NR_046663	100874096		NR_046663	ENSG00000229918	DOCK9-AS1	-	DOCK9 antisense RNA 1	ncRNA
165821	chr3	105827771	105828230	+	0	NA	intron (NM_001321811, intron 3 of 16)	intron (NM_001321811, intron 3 of 16)	39591	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
83520	chr16	27458271	27458650	+	0	NA	Intergenic	Intergenic	-5067	NR_037158	283888		NR_037158	ENSG00000259954	IL21R-AS1	-	IL21R antisense RNA 1	ncRNA
128353	chr2	54944601	54944950	+	0	NA	intron (NM_001039753, intron 27 of 40)	intron (NM_001039753, intron 27 of 40)	65497	NM_007008	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
133553	chr2	120680151	120680600	+	0	NA	Intergenic	Intergenic	-55493	NM_001374353	2736		NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
232105	chr9	133700871	133702000	+	0	NA	intron (NM_001134707, intron 13 of 20)	intron (NM_001134707, intron 13 of 20)	36917	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
67080	chr14	68143601	68144200	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	320308	NM_001321815	5890		NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
50387	chr12	47264851	47265150	+	0	NA	Intergenic	Intergenic	42399	NR_135024	105369747		NR_135024		LOC105369747	-	uncharacterized LOC105369747	ncRNA
186786	chr5	139359201	139359400	+	0	NA	intron (NM_001033112, intron 1 of 3)	AluSz|SINE|Alu	16866	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
171102	chr3	195503521	195503780	+	0	NA	Intergenic	L1MC1|LINE|L1	39675	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
163181	chr3	50196021	50196630	+	0	NA	3' UTR (NM_144499, exon 9 of 9)	3' UTR (NM_144499, exon 9 of 9)	4715	NM_000172	2779		NM_000172	ENSG00000114349	GNAT1	CSNB1G|CSNBAD3|GBT1|GNATR|HG1F	G protein subunit alpha transducin 1	protein-coding
45815	chr11	119351351	119351450	+	0	NA	Intergenic	Intergenic	-4695	NM_015645	114902		NM_015645	ENSG00000223953	C1QTNF5	CTRP5|MFRP	C1q and TNF related 5	protein-coding
132737	chr2	109348671	109349630	+	0	NA	intron (NM_001099289, intron 2 of 9)	intron (NM_001099289, intron 2 of 9)	-35525	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	ncRNA
17322	chr1	156467671	156468180	+	0	NA	intron (NM_001271629, intron 10 of 10)	intron (NM_001271629, intron 10 of 10)	22762	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
202739	chr6	159001501	159001900	+	0	NA	Intergenic	AluSc|SINE|Alu	-1498	NM_031924	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
137316	chr2	195842671	195843030	+	0	NA	intron (NM_018897, intron 47 of 64)	intron (NM_018897, intron 47 of 64)	185624	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
204367	chr7	2953651	2955580	+	0	NA	intron (NM_032415, intron 2 of 24)	intron (NM_032415, intron 2 of 24)	89252	NM_032415	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
156807	chr22	41924671	41924830	+	0	NA	3' UTR (NM_052945, exon 3 of 3)	3' UTR (NM_052945, exon 3 of 3)	-1453	NR_039760	100616259		NR_039760	ENSG00000283829	MIR378I	-	microRNA 378i	ncRNA
44096	chr11	95789001	95791150	+	0	NA	promoter-TSS (NM_001243777)	promoter-TSS (NM_001243777)	-293	NM_001330357	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
62076	chr13	94352171	94352330	+	0	NA	intron (NM_005708, intron 6 of 8)	intron (NM_005708, intron 6 of 8)	127432	NM_001922	1638		NM_001922	ENSG00000080166	DCT	OCA8|TRP-2|TYRP2	dopachrome tautomerase	protein-coding
134369	chr2	136238301	136239800	+	0	NA	Intergenic	Intergenic	-120901	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
103446	chr17	78273701	78274330	+	0	NA	intron (NR_073178, intron 1 of 6)	MLT1H2|LTR|ERVL-MaLR	4477	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
36596	chr11	6726701	6726930	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-4936	NR_003945	387751		NR_003945	ENSG00000254838	GVINP1	GVIN1|GVIN1P|VLIG-1|VLIG1	GTPase, very large interferon inducible pseudogene 1	pseudo
231836	chr9	132590671	132591030	+	0	NA	TTS (NM_020064)	TTS (NM_020064)	8244	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
171474	chr3	196486351	196486600	+	0	NA	intron (NM_152617, intron 3 of 5)	AluJr4|SINE|Alu	17293	NM_152617	165918		NM_152617	ENSG00000163961	RNF168	RIDL|hRNF168	ring finger protein 168	protein-coding
25498	chr10	7071151	7071450	+	0	NA	Intergenic	Intergenic	115484	NR_132972	106635547		NR_132972		SNORD129	-	small nucleolar RNA, C/D box 129	snoRNA
202865	chr6	159833921	159834380	+	0	NA	Intergenic	MamGypLTR2b|LTR|Gypsy	33874	NM_001271862	154197		NM_173516	ENSG00000146453	PNLDC1	HsPNLDC1|SPGF57|Trimmer	PARN like ribonuclease domain containing exonuclease 1	protein-coding
124919	chr2	8521101	8521730	+	0	NA	Intergenic	Intergenic	62377	NR_110257	101929567		NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA
128059	chr2	47791701	47792080	+	0	NA	intron (NM_001281493, intron 2 of 8)	AluSq2|SINE|Alu	7935	NM_001281494	2956		NM_000179	ENSG00000116062	MSH6	GTBP|GTMBP|HNPCC5|HSAP|LYNCH5|MMRCS3|MSH-6|p160	mutS homolog 6	protein-coding
127966	chr2	46697401	46697600	+	0	NA	Intergenic	L2c|LINE|L2	-1460	NM_014011	9655		NM_014011	ENSG00000171150	SOCS5	CIS6|CISH6|Cish5|SOCS-5	suppressor of cytokine signaling 5	protein-coding
71500	chr14	106011621	106012400	+	0	NA	Intergenic	Intergenic	-39741	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
156586	chr22	41529251	41530400	+	0	NA	TTS (NM_001098)	TTS (NM_001098)	14645	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
88569	chr16	85554801	85556060	+	0	NA	Intergenic	CpG	-55979	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
26362	chr10	15898021	15898350	+	0	NA	Intergenic	MER135|DNA|DNA	-37652	NM_001318330	80013		NM_024948	ENSG00000148481	MINDY3	C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042	MINDY lysine 48 deubiquitinase 3	protein-coding
231511	chr9	131407501	131409080	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	14204	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
118339	chr19	35627301	35627500	+	0	NA	Intergenic	AluSx|SINE|Alu	-1616	NM_001319113	79171		NM_024321	ENSG00000126254	RBM42	-	RNA binding motif protein 42	protein-coding
100107	chr17	58326851	58327250	+	0	NA	intron (NM_001261835, intron 1 of 31)	intron (NM_001261835, intron 1 of 31)	1600	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
230109	chr9	127609871	127610450	+	0	NA	Intergenic	L2c|LINE|L2	-1752	NM_001374309	6812		NM_003165	ENSG00000136854	STXBP1	DEE4|MUNC18-1|N-Sec1|NSEC1|P67|RBSEC1|UNC18|unc-18A|unc18-1	syntaxin binding protein 1	protein-coding
135465	chr2	161280471	161281580	+	0	NA	Intergenic	Intergenic	-26382	NR_110593	101929512		NR_110593		PSMD14-DT	-	PSMD14 divergent transcript	ncRNA
177445	chr4	112938501	112938730	+	0	NA	intron (NM_001354253, intron 2 of 45)	intron (NM_001354253, intron 2 of 45)	77628	NM_001354267	287		NM_001148	ENSG00000145362	ANK2	ANK-2|CFAP87|FAP87|LQT4|brank-2	ankyrin 2	protein-coding
88738	chr16	86320321	86320580	+	0	NA	Intergenic	Intergenic	25229	NR_024406	732275		NR_024406	ENSG00000168367	LINC00917	-	long intergenic non-protein coding RNA 917	ncRNA
58873	chr13	18211791	18212500	+	0	NA	intron (NR_027278, intron 1 of 7)	HSATI|Satellite|Satellite	16848	NR_027278	26080		NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
134063	chr2	131494471	131495200	+	0	NA	intron (NR_026922, intron 1 of 17)	intron (NR_026922, intron 1 of 17)	2022	NR_026922	150776		NR_026922	ENSG00000293311	SMPD4BP	-	sphingomyelin phosphodiesterase 4B, pseudogene	pseudo
200735	chr6	137722501	137723200	+	0	NA	Intergenic	Intergenic	16187	NR_121618	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
25105	chr10	3943751	3944950	+	0	NA	Intergenic	AluSx|SINE|Alu	-46810	NR_106726	102464829		NR_106726	ENSG00000274809	MIR6078	hsa-mir-6078	microRNA 6078	ncRNA
199879	chr6	127816471	127817050	+	0	NA	intron (NM_001010923, intron 3 of 5).2	L2a|LINE|L2	38428	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
83671	chr16	28367551	28368330	+	0	NA	Intergenic	CpG	-5080	NM_001282524	728741		NM_001282524	ENSG00000198156	NPIPB6	NPIPB	nuclear pore complex interacting protein family member B6	protein-coding
99657	chr17	50708721	50709600	+	0	NA	Intergenic	Intergenic	-1246	NM_052855	91369		NM_052855	ENSG00000154945	ANKRD40	-	ankyrin repeat domain 40	protein-coding
90548	chr17	1498951	1499650	+	0	NA	intron (NM_016532, intron 7 of 11)	AluSg4|SINE|Alu	-6614	NM_001080779	4641		NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|MyoIC|NMI|myr2	myosin IC	protein-coding
222228	chr8	133090751	133090850	+	0	NA	intron (NM_001045556, intron 1 of 8)	MIRb|SINE|MIR	11802	NM_001282964	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
77445	chr15	84242001	84242300	+	0	NA	exon (NM_001267536, exon 8 of 9)	exon (NM_001267536, exon 8 of 9)	6377	NM_001267536	643707		NM_001267536	ENSG00000184206	GOLGA6L4	-	golgin A6 family like 4	protein-coding
238581	chrX	153879021	153879630	+	0	NA	intron (NM_001278116, intron 1 of 28)	intron (NM_001278116, intron 1 of 28)	-1347	NR_130768	100996465		NM_001039768	ENSG00000273769	L1CAM-AS1	LCA10|LCAP	L1CAM antisense RNA 1	ncRNA
223381	chr8	143902251	143903280	+	0	NA	Intergenic	Intergenic	-24298	NM_031308	83481		NM_031308	ENSG00000261150	EPPK1	EPIPL|EPIPL1	epiplakin 1	protein-coding
39084	chr11	47999471	48000050	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	19201	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
49839	chr12	32455601	32455880	+	0	NA	intron (NM_001370298, intron 1 of 16)	intron (NM_001370298, intron 1 of 16)	-30232	NM_001304481	121512		NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
94489	chr17	29284271	29284630	+	0	NA	intron (NM_020772, intron 2 of 3)	AluSx1|SINE|Alu	9698	NM_020772	57532		NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|NUFP2|PIG1	nuclear FMR1 interacting protein 2	protein-coding
38710	chr11	46672451	46672780	+	0	NA	non-coding (NR_144422, exon 18 of 18)	non-coding (NR_144422, exon 18 of 18)	28004	NM_004308	392		NM_004308	ENSG00000175220	ARHGAP1	CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
173006	chr4	4347971	4349030	+	0	NA	Intergenic	LTR12|LTR|ERV1	-38032	NM_001287763	27065		NM_014392	ENSG00000168824	NSG1	D4S234|D4S234E|NEEP21|P21	neuronal vesicle trafficking associated 1	protein-coding
56232	chr12	111835951	111836050	+	0	NA	Intergenic	LTR12C|LTR|ERV1	5930	NR_152606	51275		NR_015404	ENSG00000234608	MAPKAPK5-AS1	C12orf47|MAAS	MAPKAPK5 antisense RNA 1	ncRNA
21754	chr1	206900051	206900630	+	0	NA	exon (NM_001185158, exon 3 of 5)	exon (NM_001185158, exon 3 of 5)	2897	NM_006850	11009		NM_006850	ENSG00000162892	IL24	C49A|FISP|IL10B|MDA7|MOB5|ST16	interleukin 24	protein-coding
6220	chr1	27492471	27492700	+	0	NA	Intergenic	Intergenic	-2418	NM_006990	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
202951	chr6	161078071	161078630	+	0	NA	intron (NM_006724, intron 5 of 25)	intron (NM_006724, intron 5 of 25)	83632	NR_024277	79992		NM_024929		AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1	ncRNA
228952	chr9	113406371	113407430	+	0	NA	TTS (NM_001278255)	TTS (NM_001278255)	3775	NR_027261	54107		NM_017443	ENSG00000148229	POLE3	CHARAC17|CHRAC17|CHRAC2|YBL1|p17	DNA polymerase epsilon 3, accessory subunit	protein-coding
1714	chr1	5509821	5510100	+	0	NA	Intergenic	Intergenic	352781	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
224012	chr9	2657351	2657650	+	0	NA	3' UTR (NM_001018056, exon 18 of 18)	3' UTR (NM_001018056, exon 18 of 18)	-35127	NR_015375	401491		NR_015375	ENSG00000236404	VLDLR-AS1	linc-VLDLR|lincRNA-VLDLR	VLDLR antisense RNA 1	ncRNA
149107	chr21	17509851	17510250	+	0	NA	Intergenic	Intergenic	-2856	NM_001207066	1525		NM_001338	ENSG00000154639	CXADR	CAR|CAR4/6|HCAR	CXADR Ig-like cell adhesion molecule	protein-coding
96366	chr17	40094551	40094750	+	0	NA	TTS (NM_001190919)	TTS (NM_001190919)	5939	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
193863	chr6	31561501	31561700	+	0	NA	intron (NR_149045, intron 1 of 1)	AluSz6|SINE|Alu	-10499	NM_001159740	4049		NM_000595	ENSG00000226979	LTA	LT|TNFB|TNFSF1|TNLG1E	lymphotoxin alpha	protein-coding
51140	chr12	50120151	50120250	+	0	NA	exon (NM_001257134, exon 2 of 2)	exon (NM_001257134, exon 2 of 2)	7964	NM_001257134	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
214700	chr7	150991351	150991650	+	0	NA	intron (NM_000603, intron 1 of 26)	L2c|LINE|L2	483	NM_000603	4846		NM_000603	ENSG00000164867	NOS3	ECNOS|eNOS	nitric oxide synthase 3	protein-coding
16626	chr1	155088771	155089530	+	0	NA	Intergenic	L2b|LINE|L2	10313	NM_004952	1944		NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding
31913	chr10	100481201	100482100	+	0	NA	intron (NM_003393, intron 4 of 5)	intron (NM_003393, intron 4 of 5)	18641	NM_003393	7479		NM_003393	ENSG00000075290	WNT8B	-	Wnt family member 8B	protein-coding
237286	chrX	112718901	112719100	+	0	NA	Intergenic	L1PA2|LINE|L1	-39062	NM_178175	340596		NM_178175	ENSG00000182508	LHFPL1	-	LHFPL tetraspan subfamily member 1	protein-coding
221253	chr8	122773671	122773900	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-7870	NM_001362797	22882		NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding
232564	chr9	136362021	136362280	+	0	NA	exon (NM_001080849, exon 3 of 3)	exon (NM_001080849, exon 3 of 3)	1594	NM_001080849	728489		NM_001080849	ENSG00000213221	DNLZ	C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2	DNL-type zinc finger	protein-coding
167348	chr3	128760371	128760530	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	34267	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
101499	chr17	67658851	67659650	+	0	NA	intron (NM_181671, intron 6 of 9)	MLT1H|LTR|ERVL-MaLR	-58583	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
205768	chr7	23525451	23526050	+	0	NA	intron (NM_001362760, intron 1 of 8)	AluSx1|SINE|Alu	6231	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
95533	chr17	36594101	36594500	+	0	NA	intron (NM_024308, intron 1 of 6)	intron (NM_024308, intron 1 of 6)	2421	NM_024308	79154		NM_024308	ENSG00000278535	DHRS11	ARPG836|SDR24C1|spDHRS11	dehydrogenase/reductase 11	protein-coding
231497	chr9	131395001	131396050	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	1439	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
228602	chr9	105127421	105128980	+	0	NA	Intergenic	Intergenic	-116405	NM_001330731	23446		NM_022109	ENSG00000070214	SLC44A1	CD92|CDW92|CHTL1|CONATOC|CTL1	solute carrier family 44 member 1	protein-coding
135572	chr2	165796101	165796300	+	0	NA	Intergenic	Intergenic	-1953	NM_004482	2591		NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HFTC1|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
202601	chr6	158714651	158714950	+	0	NA	intron (NM_001318745, intron 6 of 14)	intron (NM_001318745, intron 6 of 14)	49953	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
57598	chr12	122452921	122454280	+	0	NA	Intergenic	AluSx|SINE|Alu	-30931	NM_198240	6249		NM_002956	ENSG00000130779	CLIP1	CLIP|CLIP-170|CLIP170|CYLN1|RSN	CAP-Gly domain containing linker protein 1	protein-coding
56454	chr12	114683821	114684600	+	0	NA	promoter-TSS (NM_016569)	promoter-TSS (NM_016569)	-35	NM_005996	6926		NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box transcription factor 3	protein-coding
367	chr1	1028121	1028500	+	0	NA	intron (NM_198576, intron 2 of 35)	intron (NM_198576, intron 2 of 35)	-5683	NM_001364727	375790		NM_198576	ENSG00000188157	AGRN	AGRIN|CMS8|CMSPPD	agrin	protein-coding
190557	chr5	180800971	180801200	+	0	NA	intron (NR_157150, intron 1 of 1)	intron (NR_157150, intron 1 of 1)	1721	NM_001364394	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
130438	chr2	85413671	85414980	+	0	NA	promoter-TSS (NM_001256139)	promoter-TSS (NM_001256139)	-251	NM_001256139	822		NM_001747	ENSG00000042493	CAPG	AFCP|HEL-S-66|MCP	capping actin protein, gelsolin like	protein-coding
164728	chr3	68932601	68933000	+	0	NA	promoter-TSS (NM_182522)	promoter-TSS (NM_182522)	-190	NM_001005527	151647		NM_182522	ENSG00000163377	TAFA4	FAM19A4|TAFA-4	TAFA chemokine like family member 4	protein-coding
103479	chr17	78351321	78351930	+	0	NA	Intergenic	Intergenic	8042	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
233477	chr9	137780271	137780430	+	0	NA	intron (NM_024757, intron 14 of 26)	intron (NM_024757, intron 14 of 26)	8056	NR_147508	651337		NR_147508	ENSG00000293104	LOC651337	-	uncharacterized LOC651337	ncRNA
7576	chr1	35174021	35174580	+	0	NA	Intergenic	Intergenic	18845	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
14725	chr1	145976701	145976900	+	0	NA	intron (NM_001330685, intron 3 of 6)	AluSc|SINE|Alu	12110	NM_032305	84265		NM_032305	ENSG00000121851	POLR3GL	RPC32HOM|SOFM|flj32422	RNA polymerase III subunit GL	protein-coding
155115	chr22	37621051	37621680	+	0	NA	intron (NM_001172688, intron 7 of 17)	intron (NM_001172688, intron 7 of 17)	12325	NM_001172688	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
21274	chr1	204403801	204405380	+	0	NA	3' UTR (NM_032833, exon 2 of 2)	3' UTR (NM_032833, exon 2 of 2)	7227	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
115195	chr19	14466951	14467250	+	0	NA	intron (NM_002741, intron 12 of 21)	AluSp|SINE|Alu	8254	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
106417	chr18	13523951	13524250	+	0	NA	intron (NM_001378099, intron 4 of 6)	intron (NM_001378099, intron 4 of 6)	64153	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA
236419	chrX	71284971	71285230	+	0	NA	intron (NM_001145408, intron 3 of 12)	intron (NM_001145408, intron 3 of 12)	1465	NM_001145408	4841		NM_007363	ENSG00000147140	NONO	MRXS34|NMT55|NRB54|P54|P54NRB|PPP1R114	non-POU domain containing octamer binding	protein-coding
16448	chr1	154579301	154580330	+	0	NA	3' UTR (NM_000748, exon 6 of 6)	3' UTR (NM_000748, exon 6 of 6)	12037	NM_000748	1141		NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding
140463	chr2	233170101	233170530	+	0	NA	intron (NM_001017915, intron 15 of 26).2	intron (NM_001017915, intron 15 of 26).2	-81256	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
47656	chr12	6312701	6313300	+	0	NA	promoter-TSS (NM_001144857)	promoter-TSS (NM_001144857)	-133	NM_001144857	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
110713	chr19	2309101	2309500	+	0	NA	Intergenic	L2b|LINE|L2	-1146	NM_001101391	645191		NM_001101391	ENSG00000220008	LINGO3	LERN2|LRRN6B	leucine rich repeat and Ig domain containing 3	protein-coding
150793	chr21	43889051	43889430	+	0	NA	intron (NM_001369878, intron 1 of 8)	L1MEd|LINE|L1	24017	NM_001369878	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
83869	chr16	28921301	28921700	+	0	NA	intron (NM_024816, intron 2 of 12)	L2c|LINE|L2	3738	NM_024816	79874		NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding
84619	chr16	30702251	30702700	+	0	NA	intron (NM_006662, intron 3 of 33)	AluSq|SINE|Alu	3304	NM_006662	10847		NM_006662	ENSG00000080603	SRCAP	DEHMBA|DOMO1|EAF1|FLHS|SWR1	Snf2 related CREBBP activator protein	protein-coding
127612	chr2	43025271	43025630	+	0	NA	Intergenic	Intergenic	14093	NR_110585	102723854		NR_110585	ENSG00000231826	LINC01819	KPRT4|LINC02590	long intergenic non-protein coding RNA 1819	ncRNA
170828	chr3	189967301	189967630	+	0	NA	intron (NM_001134418, intron 13 of 14)	intron (NM_001134418, intron 13 of 14)	137543	NR_030642	100126340		NR_030642	ENSG00000216058	MIR944	MIRN944|hsa-mir-944|mir-944	microRNA 944	ncRNA
17092	chr1	156138321	156139120	+	0	NA	TTS (NM_001282624)	TTS (NM_001282624)	-11224	NM_001193300	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
181668	chr5	50433671	50434430	+	0	NA	intron (NM_198449, intron 1 of 8)	MLT1C|LTR|ERVL-MaLR	7238	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
60361	chr13	40920471	40920630	+	0	NA	intron (NR_003365, intron 2 of 2)	L2a|LINE|L2	1200	NR_038258	100616668		NR_038258		TPTE2P5	-	TPTE2 pseudogene 5	pseudo
188465	chr5	154646771	154647650	+	0	NA	Intergenic	Intergenic	-35769	NM_001367715	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
131206	chr2	95047621	95048150	+	0	NA	intron (NM_022440, intron 1 of 1)	intron (NM_022440, intron 1 of 1)	22177	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
53573	chr12	67661451	67661850	+	0	NA	3' UTR (NM_003583, exon 2 of 2)	3' UTR (NM_003583, exon 2 of 2)	12905	NM_003583	8445		NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
237764	chrX	129755851	129757100	+	0	NA	intron (NM_003399, intron 13 of 20)	intron (NM_003399, intron 13 of 20)	17496	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
66063	chr14	58395451	58396630	+	0	NA	exon (NM_207377, exon 1 of 5)	exon (NM_207377, exon 1 of 5)	110	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
44326	chr11	102404351	102404850	+	0	NA	intron (NM_052932, intron 2 of 4)	(TATT)n|Simple_repeat|Simple_repeat	48165	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
76267	chr15	74074121	74074580	+	0	NA	intron (NM_001038640, intron 11 of 17)	intron (NM_001038640, intron 11 of 17)	8200	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
99912	chr17	56916821	56917100	+	0	NA	Intergenic	Intergenic	-2911	NM_005082	7706		NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
144038	chr20	33554501	33555780	+	0	NA	intron (NM_001032999, intron 1 of 10)	MER57E1|LTR|ERV1	-7225	NM_005093	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
150694	chr21	43702651	43703480	+	0	NA	Intergenic	Intergenic	-16064	NM_003681	8566		NM_003681	ENSG00000160209	PDXK	C21orf124|C21orf97|HEL-S-1a|HMSN6C|PKH|PNK|PRED79	pyridoxal kinase	protein-coding
110614	chr19	2196771	2196930	+	0	NA	intron (NM_032482, intron 7 of 27)	L1MD|LINE|L1	32917	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
20124	chr1	192532071	192532230	+	0	NA	Intergenic	L1PA6|LINE|L1	-43623	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
9279	chr1	46347901	46349130	+	0	NA	intron (NM_199044, intron 3 of 5)	AluSq2|SINE|Alu	7337	NM_001256127	387338		NM_199044	ENSG00000117481	NSUN4	SHTAP	NOP2/Sun RNA methyltransferase 4	protein-coding
34344	chr10	132191771	132192130	+	0	NA	intron (NM_006426, intron 2 of 13)	intron (NM_006426, intron 2 of 13)	5002	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
165570	chr3	101544251	101544580	+	0	NA	Intergenic	MER67C|LTR|ERV1	-17453	NM_017819	54931		NM_017819	ENSG00000174173	TRMT10C	COXPD30|HNYA|MRPP1|RG9MTD1	tRNA methyltransferase 10C, mitochondrial RNase P subunit	protein-coding
225127	chr9	33511771	33512330	+	0	NA	promoter-TSS (NR_003667)	promoter-TSS (NR_003667)	-884	NR_003667	441394		NM_001007550		SUGT1P1	SGT1P|SUGT1P|bA255A11.1	SUGT1 pseudogene 1	pseudo
82004	chr16	11909801	11910230	+	0	NA	intron (NM_001130007, intron 1 of 14)	AluJr4|SINE|Alu	5941	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
109463	chr19	794671	795900	+	0	NA	Intergenic	Intergenic	-2167	NM_002819	5725		NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding
113850	chr19	10640951	10641450	+	0	NA	intron (NM_001363611, intron 20 of 22)	AluJb|SINE|Alu	12672	NR_024333	147727		NM_203300	ENSG00000267100	ILF3-DT	ILF3-AS1	ILF3 divergent transcript	ncRNA
211167	chr7	102582921	102583780	+	0	NA	intron (NM_001079877, intron 18 of 19)	AluSx1|SINE|Alu	-10729	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
156978	chr22	42495051	42495430	+	0	NA	Intergenic	AluSg7|SINE|Alu	-5339	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
15687	chr1	150973321	150975730	+	0	NA	intron (NM_181746, intron 1 of 10)	CpG	310	NM_022075	29956		NM_013384	ENSG00000143418	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
106591	chr18	22174651	22175050	+	0	NA	intron (NM_005257, intron 2 of 6)	intron (NM_005257, intron 2 of 6)	5261	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
120911	chr19	45615901	45616850	+	0	NA	intron (NR_147903, intron 16 of 19)	CpG	-14163	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
216090	chr8	11013051	11013350	+	0	NA	intron (NM_173683, intron 1 of 2)	MIRb|SINE|MIR	22102	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
223887	chr9	277171	278300	+	0	NA	intron (NM_001193536, intron 1 of 46)	intron (NM_001193536, intron 1 of 46)	4687	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
237663	chrX	124299651	124299750	+	0	NA	Intergenic	L1PA14|LINE|L1	-32960	NM_001355534	100132015		NM_001355534	ENSG00000282419	TEX13D	-	TEX13 family member D	protein-coding
183649	chr5	80253371	80254290	+	0	NA	intron (NM_001174072, intron 1 of 11)	L2c|LINE|L2	2218	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
29916	chr10	73244851	73245630	+	0	NA	TTS (NM_173348)	TTS (NM_173348)	2015	NM_015190	23234		NM_015190	ENSG00000213551	DNAJC9	HDJC9|JDD1|SB73	DnaJ heat shock protein family (Hsp40) member C9	protein-coding
173494	chr4	9365801	9367080	+	0	NA	Intergenic	Intergenic	-1434	NR_027279	391622		NM_212553	ENSG00000205946	USP17L6P	DUB4|USP17L6|vDUB4	ubiquitin specific peptidase 17 like family member 6, pseudogene	pseudo
234101	chrX	9369721	9370200	+	0	NA	Intergenic	Intergenic	-93335	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
215945	chr8	8344651	8345000	+	0	NA	intron (NM_001369759, intron 3 of 5)	intron (NM_001369759, intron 3 of 5)	41419	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
188572	chr5	157128871	157129470	+	0	NA	Intergenic	AluSq2|SINE|Alu	13605	NM_001100816	9443		NM_004270	ENSG00000155868	MED7	ARC34|CRSP33|CRSP9	mediator complex subunit 7	protein-coding
174512	chr4	39979101	39979400	+	0	NA	Intergenic	Intergenic	-1294	NM_001100400	23244		NM_015200	ENSG00000121892	PDS5A	PIG54|SCC-112|SCC112	PDS5 cohesin associated factor A	protein-coding
10017	chr1	55217471	55218200	+	0	NA	promoter-TSS (NR_146283)	promoter-TSS (NR_146283)	-26	NR_146283	109729135		NR_146283	ENSG00000231090	MIR4422HG	-	MIR4422 host gene	ncRNA
821	chr1	1566951	1567350	+	0	NA	intron (NM_014188, intron 1 of 4)	intron (NM_014188, intron 1 of 4)	7713	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
111809	chr19	4470071	4470230	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2147	NM_001001520	84717		NM_032631	ENSG00000167674	HDGFL2	HDGF-2|HDGF2|HDGFRP2|HRP-2|HRP2	HDGF like 2	protein-coding
74160	chr15	55283551	55283850	+	0	NA	intron (NM_183235, intron 1 of 6)	intron (NM_183235, intron 1 of 6)	6113	NM_183235	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
165327	chr3	88026001	88026200	+	0	NA	Intergenic	LTR1F1|LTR|ERV1	32896	NM_003663	8545		NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding
74408	chr15	58979351	58979730	+	0	NA	Intergenic	Intergenic	-8123	NM_001270528	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
92425	chr17	8411871	8412230	+	0	NA	Intergenic	L2b|LINE|L2	-14223	NM_001146684	643904		NM_001146684	ENSG00000189051	RNF222	-	ring finger protein 222	protein-coding
13102	chr1	111621211	111621800	+	0	NA	intron (NM_001291896, intron 1 of 7)	intron (NM_001291896, intron 1 of 7)	-1107	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
158772	chr3	9410971	9411130	+	0	NA	intron (NM_001349451, intron 1 of 25)	AluSx1|SINE|Alu	13435	NM_001292043	55209		NM_018187	ENSG00000168137	SETD5	MRD23|SETD5A	SET domain containing 5	protein-coding
165243	chr3	73030301	73030880	+	0	NA	intron (NM_001318025, intron 2 of 7)	L2a|LINE|L2	-31069	NM_018029	55096		NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus like nucleoprotein 2	protein-coding
85238	chr16	48247171	48247730	+	0	NA	promoter-TSS (NM_001370497)	promoter-TSS (NM_001370497)	89	NM_001370497	85320		NM_032583	ENSG00000121270	ABCC11	EWWD|MRP8|WW	ATP binding cassette subfamily C member 11	protein-coding
69816	chr14	99214571	99215100	+	0	NA	intron (NM_022898, intron 2 of 2)	intron (NM_022898, intron 2 of 2)	57362	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
70719	chr14	103342271	103342850	+	0	NA	3' UTR (NM_183004, exon 11 of 11)	3' UTR (NM_183004, exon 11 of 11)	4711	NR_002964	677811		NR_002964	ENSG00000272533	SNORA28	ACA28	small nucleolar RNA, H/ACA box 28	snoRNA
210630	chr7	100454121	100455250	+	0	NA	Intergenic	AluSx1|SINE|Alu	9575	NM_001004323	402573		NM_001004323	ENSG00000185955	SPACDR	C7orf61	sperm acrosome developmental regulator	protein-coding
50189	chr12	46177671	46178680	+	0	NA	Intergenic	Intergenic	88341	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
146300	chr20	49167621	49168080	+	0	NA	intron (NM_001322930, intron 1 of 12)	intron (NM_001322930, intron 1 of 12)	20484	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
130361	chr2	85027301	85027500	+	0	NA	intron (NM_020122, intron 1 of 6)	AluSx1|SINE|Alu	39947	NR_146453	100996478		NR_146453	ENSG00000260840	LINC01964	-	long intergenic non-protein coding RNA 1964	ncRNA
175729	chr4	77618601	77618900	+	0	NA	Intergenic	Intergenic	12930	NM_001371558	10563		NM_006419	ENSG00000156234	CXCL13	ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13	C-X-C motif chemokine ligand 13	protein-coding
92373	chr17	8221801	8222600	+	0	NA	intron (NR_026951, intron 2 of 2)	intron (NR_026951, intron 2 of 2)	1843	NR_026951	284029		NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324|RNA00324|TP53LC03	long intergenic non-protein coding RNA 324	ncRNA
110136	chr19	1603521	1603980	+	0	NA	intron (NM_006830, intron 1 of 2)	intron (NM_006830, intron 1 of 2)	1712	NM_006830	10975		NM_006830	ENSG00000127540	UQCR11	0710008D09Rik|QCR10|UQCR	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding
46352	chr11	125885401	125885880	+	0	NA	intron (NM_145014, intron 1 of 3)	intron (NM_145014, intron 1 of 3)	2026	NM_145014	219844		NM_145014	ENSG00000198331	HYLS1	HLS	HYLS1 centriolar and ciliogenesis associated	protein-coding
181940	chr5	54990001	54990200	+	0	NA	Intergenic	Intergenic	-4507	NM_001135604	11082		NM_007036	ENSG00000164283	ESM1	endocan	endothelial cell specific molecule 1	protein-coding
144974	chr20	37265021	37265280	+	0	NA	Intergenic	MIRb|SINE|MIR	-3336	NM_001184731	2691		NM_021081	ENSG00000118702	GHRH	GHRF|GRF|INN	growth hormone releasing hormone	protein-coding
223506	chr8	144097051	144097300	+	0	NA	intron (NM_001916, intron 6 of 6)	intron (NM_001916, intron 6 of 6)	2099	NM_001916	1537		NM_001916	ENSG00000179091	CYC1	MC3DN6|UQCR4	cytochrome c1	protein-coding
238306	chrX	149497151	149497450	+	0	NA	intron (NM_001166550, intron 5 of 8)	MER68|LTR|ERVL	8006	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
74195	chr15	55789071	55789300	+	0	NA	Intergenic	Intergenic	-46033	NM_173814	283659		NM_173814	ENSG00000166450	PRTG	IGDCC5	protogenin	protein-coding
204861	chr7	5829451	5829750	+	0	NA	intron (NR_023382, intron 1 of 6)	intron (NR_023382, intron 1 of 6)	6440	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
156301	chr22	40526951	40527250	+	0	NA	TTS (NR_109965)	TTS (NR_109965)	5300	NR_109965	101927257		NR_109965	ENSG00000232564	MRTFA-AS1	-	MRTFA antisense RNA 1	ncRNA
6131	chr1	27358521	27359150	+	0	NA	exon (NM_001297609, exon 18 of 28)	exon (NM_001297609, exon 18 of 28)	8126	NM_001297609	9064		NM_004672	ENSG00000142733	MAP3K6	ASK2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding
137537	chr2	197217521	197217900	+	0	NA	intron (NM_153697, intron 1 of 9)	intron (NM_153697, intron 1 of 9)	19719	NR_135584	101927596		NR_135584	ENSG00000231621	ANKRD44-AS1	-	ANKRD44 antisense RNA 1	ncRNA
225292	chr9	34519071	34520080	+	0	NA	intron (NM_012144, intron 19 of 19)	intron (NM_012144, intron 19 of 19)	3415	NM_198573	375704		NM_198573	ENSG00000168913	ENHO	C9orf165|UNQ470	energy homeostasis associated	protein-coding
207539	chr7	44824351	44825350	+	0	NA	Intergenic	FLAM_C|SINE|Alu	23237	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
197458	chr6	75238601	75239000	+	0	NA	intron (NM_001865, intron 4 of 4)	intron (NM_001865, intron 4 of 4)	5001	NM_001366293	1347		NM_001865	ENSG00000112695	COX7A2	COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL	cytochrome c oxidase subunit 7A2	protein-coding
156034	chr22	39959471	39960230	+	0	NA	intron (NM_004810, intron 3 of 7)	intron (NM_004810, intron 3 of 7)	13033	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
81981	chr16	11884371	11885030	+	0	NA	intron (NM_001130007, intron 10 of 14)	AluSx|SINE|Alu	31256	NM_002094	2935		NM_002094	ENSG00000103342	GSPT1	551G9.2|ETF3A|GST1|eRF3a	G1 to S phase transition 1	protein-coding
186264	chr5	134529671	134530450	+	0	NA	intron (NM_015288, intron 1 of 10)	intron (NM_015288, intron 1 of 10)	3952	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
85989	chr16	57446401	57448030	+	0	NA	promoter-TSS (NM_020312)	promoter-TSS (NM_020312)	170	NM_020313	57019		NM_020313	ENSG00000005194	CIAPIN1	Anamorsin|CIAE2|DRE2|PRO0915	cytokine induced apoptosis inhibitor 1	protein-coding
172987	chr4	4226521	4226780	+	0	NA	exon (NM_177998, exon 1 of 6)	exon (NM_177998, exon 1 of 6)	279	NM_177998	133060		NM_177998	ENSG00000163982	OTOP1	-	otopetrin 1	protein-coding
14917	chr1	147389901	147390200	+	0	NA	intron (NR_038423, intron 3 of 3)	L1P4d|LINE|L1	127825	NR_038423	100289211		NR_038423	ENSG00000278811	LINC00624	-	long intergenic non-protein coding RNA 624	ncRNA
228420	chr9	99433471	99434030	+	0	NA	Intergenic	Intergenic	-58493	NR_102271	100996569		NR_102270	ENSG00000271086	NAMA	-	non-protein coding RNA, associated with MAP kinase pathway and growth arrest	ncRNA
148595	chr21	5114221	5114950	+	0	NA	Intergenic	Intergenic	12525	NR_146631	105377138		NR_146631		LINC01678	-	long intergenic non-protein coding RNA 1678	ncRNA
189289	chr5	172109701	172110250	+	0	NA	intron (NM_005990, intron 4 of 18)	intron (NM_005990, intron 4 of 18)	78249	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
199846	chr6	127762301	127762880	+	0	NA	intron (NM_001010923, intron 4 of 5).2	L2a|LINE|L2	92598	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
1449	chr1	2653801	2654300	+	0	NA	intron (NM_001242672, intron 5 of 7)	intron (NM_001242672, intron 5 of 7)	-21034	NM_033467	79258		NM_033467	ENSG00000142606	MMEL1	MMEL2|NEP2|NEPII|NL1|NL2|SEP	membrane metalloendopeptidase like 1	protein-coding
66609	chr14	63652721	63652980	+	0	NA	Intergenic	Intergenic	-10979	NM_001382426	112840		NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding
88820	chr16	87412601	87412800	+	0	NA	exon (NM_015144, exon 12 of 13)	exon (NM_015144, exon 12 of 13)	20364	NM_022818	81631		NM_022818	ENSG00000140941	MAP1LC3B	ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a	microtubule associated protein 1 light chain 3 beta	protein-coding
201085	chr6	142811901	142812100	+	0	NA	intron (NM_006734, intron 2 of 9)	L1MEc|LINE|L1	133176	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
59947	chr13	31204621	31205050	+	0	NA	intron (NM_194318, intron 1 of 14)	intron (NM_194318, intron 1 of 14)	4860	NM_194318	145173		NM_194318	ENSG00000187676	B3GLCT	B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T	beta 3-glucosyltransferase	protein-coding
80243	chr16	2203521	2203980	+	0	NA	Intergenic	Intergenic	-1704	NM_001199173	64223		NM_022372	ENSG00000167965	MLST8	GBL|GbetaL|LST8|POP3|WAT1	MTOR associated protein, LST8 homolog	protein-coding
41764	chr11	66708151	66708250	+	0	NA	exon (NM_006946, exon 12 of 38)	exon (NM_006946, exon 12 of 38)	21016	NM_006946	6712		NM_006946	ENSG00000173898	SPTBN2	GTRAP41|SCA5|SCAR14	spectrin beta, non-erythrocytic 2	protein-coding
204605	chr7	5354771	5355130	+	0	NA	intron (NM_001080495, intron 16 of 29)	intron (NM_001080495, intron 16 of 29)	68596	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
181696	chr5	50595251	50595730	+	0	NA	Intergenic	LTR37-int|LTR|ERV1	-70441	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
75420	chr15	65779621	65780230	+	0	NA	intron (NM_001376919, intron 1 of 31)	AluSz6|SINE|Alu	12368	NM_001376919	10260		NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding
35210	chr11	814401	815050	+	0	NA	Intergenic	AluY|SINE|Alu	3044	NR_002585	619565		NR_002585	ENSG00000199785	SNORA52	ACA52	small nucleolar RNA, H/ACA box 52	snoRNA
81792	chr16	11534221	11534630	+	0	NA	Intergenic	MER77|LTR|ERVL	-7178	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
58001	chr12	124347701	124347900	+	0	NA	intron (NM_001077261, intron 31 of 47)	intron (NM_001077261, intron 31 of 47)	-10558	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
10834	chr1	77951001	77951430	+	0	NA	intron (NR_146539, intron 18 of 22)	intron (NR_146539, intron 18 of 22)	27857	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
180593	chr5	15013821	15014100	+	0	NA	Intergenic	Intergenic	-142182	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
208015	chr7	55566871	55567030	+	0	NA	intron (NM_001321244, intron 1 of 5)	L3|LINE|CR1	4918	NM_001321250	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
204955	chr7	6352171	6352580	+	0	NA	Intergenic	AluSz|SINE|Alu	-3408	NM_001037163	84792		NM_032706	ENSG00000178397	FAM220A	ACPIN1|C7orf70|SIPAR	family with sequence similarity 220 member A	protein-coding
174716	chr4	42645751	42646430	+	0	NA	intron (NM_001105529, intron 1 of 35)	intron (NM_001105529, intron 1 of 35)	11015	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
83177	chr16	23478651	23479150	+	0	NA	exon (NM_015044, exon 12 of 17)	exon (NM_015044, exon 12 of 17)	-25711	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
144127	chr20	34005271	34005630	+	0	NA	intron (NM_016732, intron 1 of 9)	AluSc5|SINE|Alu	-11083	NR_109886	101926888		NR_109885	ENSG00000285230	RALY-AS1	-	RALY antisense RNA 1	ncRNA
99151	chr17	49356651	49356950	+	0	NA	intron (NR_135579, intron 1 of 7)	intron (NR_135579, intron 1 of 7)	-4365	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
215358	chr7	157386621	157387900	+	0	NA	TTS (NM_005494)	TTS (NM_005494)	50256	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
192881	chr6	27478151	27479200	+	0	NA	Intergenic	Intergenic	-5557	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
86913	chr16	68074521	68075630	+	0	NA	intron (NM_001271763, intron 11 of 14)	intron (NM_001271763, intron 11 of 14)	-10295	NM_004555	4775		NM_004555	ENSG00000072736	NFATC3	NF-AT4c|NFAT4|NFATX|n339260	nuclear factor of activated T cells 3	protein-coding
30882	chr10	86950321	86950800	+	0	NA	intron (NM_024756, intron 1 of 6)	HAL1|LINE|L1	-5199	NM_001330120	6623		NM_003087	ENSG00000173267	SNCG	BCSG1|SR	synuclein gamma	protein-coding
135749	chr2	169564971	169565600	+	0	NA	intron (NM_001322048, intron 2 of 13)	AluY|SINE|Alu	8580	NM_024622	79675		NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding
177769	chr4	122715951	122716250	+	0	NA	Intergenic	Intergenic	16358	NR_024041	729338		NR_024041		CETN4P	-	centrin 4, pseudogene	pseudo
205747	chr7	23504851	23505150	+	0	NA	3' UTR (NM_001282758, exon 9 of 9)	3' UTR (NM_001282758, exon 9 of 9)	14612	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
158576	chr3	4586221	4586680	+	0	NA	intron (NM_002222, intron 4 of 57)	MIR|SINE|MIR	93102	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
167367	chr3	128783151	128783650	+	0	NA	intron (NM_004637, intron 1 of 5)	intron (NM_004637, intron 1 of 5)	57217	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
62244	chr13	98537451	98538000	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	-15600	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
156850	chr22	41996801	41997230	+	0	NA	3' UTR (NM_019106, exon 10 of 10)	3' UTR (NM_019106, exon 10 of 10)	-1773	NM_152613	164684		NM_152613	ENSG00000183066	WBP2NL	GRAMD7|PAWP	WBP2 N-terminal like	protein-coding
817	chr1	1562371	1563280	+	0	NA	intron (NM_014188, intron 2 of 4)	intron (NM_014188, intron 2 of 4)	12038	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
17104	chr1	156150171	156150330	+	0	NA	intron (NM_001370568, intron 1 of 13)	intron (NM_001370568, intron 1 of 13)	306	NM_001370571	64218		NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding
6008	chr1	27015171	27015580	+	0	NA	Intergenic	Intergenic	-2525	NM_052943	115572		NM_052943	ENSG00000158246	TENT5B	FAM46|FAM46B	terminal nucleotidyltransferase 5B	protein-coding
127809	chr2	44616521	44617250	+	0	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	254938	NM_024766	79823		NM_024766	ENSG00000143919	CAMKMT	C2orf34|CLNMT|CaM KMT|Cam|KMT	calmodulin-lysine N-methyltransferase	protein-coding
28233	chr10	45432061	45432230	+	0	NA	intron (NM_001256153, intron 7 of 13).2	intron (NM_001256153, intron 7 of 13).2	20976	NR_120674	102724323		NR_120674	ENSG00000231964	LOC102724323	-	uncharacterized LOC102724323	ncRNA
225038	chr9	33154621	33155100	+	0	NA	intron (NM_001378495, intron 1 of 5)	MER30|DNA|hAT-Charlie	-12088	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
223702	chr8	144438621	144439080	+	0	NA	intron (NR_109770, intron 5 of 5)	intron (NR_109770, intron 5 of 5)	-3231	NR_106953	102466271		NR_106953	ENSG00000276598	MIR6893	hsa-mir-6893	microRNA 6893	ncRNA
160816	chr3	33026971	33027130	+	0	NA	intron (NM_000404, intron 10 of 15)	MER52D|LTR|ERV1	69782	NM_001079811	2720		NM_000404	ENSG00000170266	GLB1	EBP|ELNR1|MPS4B	galactosidase beta 1	protein-coding
11387	chr1	89665921	89666180	+	0	NA	intron (NM_032270, intron 1 of 2)	Tigger3b|DNA|TcMar-Tigger	32930	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
113978	chr19	10818921	10819580	+	0	NA	intron (NM_001005362, intron 14 of 19)	AluJo|SINE|Alu	-1754	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
236571	chrX	72572221	72572480	+	0	NA	intron (NM_001166419, intron 1 of 7)	intron (NM_001166419, intron 1 of 7)	493	NM_001166418	55869		NM_018486	ENSG00000147099	HDAC8	CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS	histone deacetylase 8	protein-coding
99858	chr17	55735801	55736000	+	0	NA	Intergenic	Intergenic	-3819	NM_001099640	55273		NM_018286	ENSG00000166292	TMEM100	-	transmembrane protein 100	protein-coding
132312	chr2	105326351	105326730	+	0	NA	intron (NM_001328646, intron 1 of 11)	AluJb|SINE|Alu	3116	NR_137328	9392		NM_004257	ENSG00000135966	TGFBRAP1	TRAP-1|TRAP1|VPS3	transforming growth factor beta receptor associated protein 1	protein-coding
199391	chr6	116287701	116288130	+	0	NA	intron (NM_001080976, intron 1 of 5)	intron (NM_001080976, intron 1 of 5)	7829	NR_136524	29940		NM_013352	ENSG00000111817	DSE	DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2	dermatan sulfate epimerase	protein-coding
146851	chr20	51432451	51432750	+	0	NA	exon (NM_001258296, exon 9 of 11)	exon (NM_001258296, exon 9 of 11)	20377	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
103511	chr17	78436021	78436880	+	0	NA	intron (NM_173628, intron 74 of 80)	intron (NM_173628, intron 74 of 80)	-48460	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
213010	chr7	131011821	131012870	+	0	NA	intron (NR_109850, intron 3 of 5)	MIRb|SINE|MIR	94685	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
176414	chr4	89222171	89222350	+	0	NA	Intergenic	Intergenic	85540	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
160531	chr3	30656621	30657000	+	0	NA	intron (NM_001024847, intron 4 of 7)	intron (NM_001024847, intron 4 of 7)	50209	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
96876	chr17	42072521	42073180	+	0	NA	intron (NM_001378270, intron 1 of 8)	CpG	-22249	NM_001358661	110806298		NM_001358661	ENSG00000267221	C17orf113	-	chromosome 17 open reading frame 113	protein-coding
24803	chr10	87401	87600	+	0	NA	Intergenic	Intergenic	-38204	NM_177987	347688		NM_177987	ENSG00000261456	TUBB8	OOMD|OOMD2|OZEMA2|bA631M21.2	tubulin beta 8 class VIII	protein-coding
219720	chr8	81018401	81018600	+	0	NA	intron (NM_018440, intron 3 of 8)	THE1B|LTR|ERVL-MaLR	93568	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
16555	chr1	154966751	154967050	+	0	NA	intron (NM_001130041, intron 8 of 12)	AluJo|SINE|Alu	3847	NM_001130040	6464		NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding
103836	chr17	79495451	79495630	+	0	NA	intron (NM_001350453, intron 1 of 13)	intron (NM_001350453, intron 1 of 13)	20608	NM_001082575	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
216523	chr8	20508471	20508630	+	0	NA	Intergenic	Intergenic	106376	NR_145737	109616983		NR_145737		SNORD3F	RNU3P2|SNORD3P2|U3|U3.2	small nucleolar RNA, C/D box 3F	snoRNA
89680	chr16	89381101	89381400	+	0	NA	intron (NR_045839, intron 2 of 9)	AluSz|SINE|Alu	-49668	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
157271	chr22	44025551	44025980	+	0	NA	promoter-TSS (NM_001243386)	promoter-TSS (NM_001243386)	-539	NM_001243386	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
220065	chr8	93914571	93914730	+	0	NA	Intergenic	AluJb|SINE|Alu	1469	NR_039602	100616169		NR_039602	ENSG00000284288	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA
103497	chr17	78385671	78385830	+	0	NA	intron (NR_111989, intron 1 of 8)	intron (NR_111989, intron 1 of 8)	7101	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
42164	chr11	67800821	67801150	+	0	NA	intron (NR_024249, intron 2 of 3)	intron (NR_024249, intron 2 of 3)	4351	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
233499	chr9	138221951	138222130	+	0	NA	intron (NR_146178, intron 4 of 14)	intron (NR_146178, intron 4 of 14)	5184	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
58363	chr12	131667101	131667450	+	0	NA	Intergenic	Intergenic	-19154	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
6498	chr1	28504851	28504950	+	0	NA	Intergenic	AluSg4|SINE|Alu	-1043	NR_002909	8420		NR_002909	ENSG00000242125	SNHG3	NCRNA00014|RNU17C|RNU17D|U17HG|U17HG-A|U17HG-AB	small nucleolar RNA host gene 3	ncRNA
198864	chr6	109440171	109441900	+	0	NA	promoter-TSS (NM_173672)	promoter-TSS (NM_173672)	136	NR_104429	285755		NM_173672	ENSG00000185250	PPIL6	PPIase|RSPH12|bA425D10.6|dJ919F19.1	peptidylprolyl isomerase like 6	protein-coding
88075	chr16	81477771	81477930	+	0	NA	intron (NM_198390, intron 1 of 20)	MLT1J|LTR|ERVL-MaLR	-17504	NM_030629	80790		NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding
32479	chr10	102662651	102663430	+	0	NA	Intergenic	AluY|SINE|Alu	18545	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
84311	chr16	30112021	30112330	+	0	NA	exon (NM_024307, exon 6 of 10)	exon (NM_024307, exon 6 of 10)	1362	NM_024307	79153		NM_024307	ENSG00000102886	GDPD3	GDE7	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding
222363	chr8	133569501	133570300	+	0	NA	intron (NM_173344, intron 1 of 9)	CpG	1987	NM_003033	6482		NM_003033	ENSG00000008513	ST3GAL1	Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
184275	chr5	96751451	96751800	+	0	NA	intron (NM_001375317, intron 19 of 30)	intron (NM_001375317, intron 19 of 30)	8023	NR_104285	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
82192	chr16	14963001	14963600	+	0	NA	Intergenic	AluJb|SINE|Alu	-11435	NM_001285447	23042		NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding
60669	chr13	43054051	43054350	+	0	NA	intron (NM_013238, intron 1 of 5)	L1PB1|LINE|L1	30614	NM_013238	29103		NM_013238	ENSG00000120675	DNAJC15	DNAJD1|HSD18|MCJ	DnaJ heat shock protein family (Hsp40) member C15	protein-coding
81596	chr16	10386951	10387050	+	0	NA	intron (NR_045815, intron 1 of 10)	intron (NR_045815, intron 1 of 10)	939	NM_001352120	80063		NM_024997	ENSG00000166669	ATF7IP2	MCAF2	activating transcription factor 7 interacting protein 2	protein-coding
146965	chr20	52426751	52427050	+	0	NA	Intergenic	Intergenic	-193938	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
147270	chr20	57472921	57473700	+	0	NA	Intergenic	Intergenic	51557	NM_001269052	140690		NM_080618	ENSG00000124092	CTCFL	BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2	CCCTC-binding factor like	protein-coding
26872	chr10	25062171	25062830	+	0	NA	promoter-TSS (NM_001270383)	promoter-TSS (NM_001270383)	-221	NM_001270383	219670		NM_145010	ENSG00000151023	ENKUR	C10orf63|CFAP106	enkurin, TRPC channel interacting protein	protein-coding
222069	chr8	130324701	130324930	+	0	NA	intron (NM_001362924, intron 3 of 30)	intron (NM_001362924, intron 3 of 30)	-28282	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
102984	chr17	76730001	76730480	+	0	NA	intron (NM_001378348, intron 2 of 4)	AluSz|SINE|Alu	3401	NM_001378353	124512		NM_001080510	ENSG00000181038	METTL23	C17orf95|MRT44	methyltransferase 23, arginine	protein-coding
162163	chr3	46979021	46980340	+	0	NA	promoter-TSS (NM_015175)	promoter-TSS (NM_015175)	14	NM_015175	23218		NM_015175	ENSG00000160796	NBEAL2	BDPLT4|GPS	neurobeachin like 2	protein-coding
108855	chr18	79325901	79326800	+	0	NA	intron (NM_198531, intron 15 of 29)	intron (NM_198531, intron 15 of 29)	-69580	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
204348	chr7	2870271	2871030	+	0	NA	Intergenic	LTR16B1|LTR|ERVL	-26342	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
66301	chr14	61400801	61401150	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	79532	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
174133	chr4	36226201	36226400	+	0	NA	intron (NR_146894, intron 2 of 32)	MER34|LTR|ERV1	17639	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
159151	chr3	12719671	12720900	+	0	NA	Intergenic	Intergenic	38974	NM_001284407	55287		NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
214757	chr7	151070521	151071380	+	0	NA	intron (NM_001199692, intron 12 of 22)	intron (NM_001199692, intron 12 of 22)	8308	NM_001199694	6522		NM_003040	ENSG00000164889	SLC4A2	AE2|BND3L|EPB3L1|HKB3|NBND3|OPTB9	solute carrier family 4 member 2	protein-coding
78914	chr15	101194421	101194950	+	0	NA	intron (NM_014918, intron 2 of 2)	intron (NM_014918, intron 2 of 2)	57363	NM_014918	22856		NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
111612	chr19	4110371	4110530	+	0	NA	intron (NM_030662, intron 3 of 10)	intron (NM_030662, intron 3 of 10)	13672	NM_030662	5605		NM_030662	ENSG00000126934	MAP2K2	CFC4|MAPKK2|MEK2|MKK2|PRKMK2	mitogen-activated protein kinase kinase 2	protein-coding
171285	chr3	195900371	195901800	+	0	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	-5143	NM_001382274	10188		NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding
151692	chr22	17220451	17220550	+	0	NA	promoter-TSS (NM_001282229)	promoter-TSS (NM_001282229)	-915	NM_001282229	51816		NM_017424	ENSG00000093072	ADA2	ADGF|CECR1|IDGFL|PAN|SNEDS|VAIHS	adenosine deaminase 2	protein-coding
213237	chr7	133854671	133854830	+	0	NA	intron (NM_021807, intron 11 of 17)	intron (NM_021807, intron 11 of 17)	-29862	NR_120513	101928861		NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA
60003	chr13	32430201	32430400	+	0	NA	Intergenic	Intergenic	-2170	NM_001353628	90634		NM_052818	ENSG00000139597	N4BP2L1	CG018	NEDD4 binding protein 2 like 1	protein-coding
59538	chr13	27259721	27260350	+	0	NA	Intergenic	L1MA10|LINE|L1	4634	NR_002575	619499		NR_002575	ENSG00000207051	SNORA27	ACA27	small nucleolar RNA, H/ACA box 27	snoRNA
70207	chr14	100566621	100566880	+	0	NA	intron (NM_001385102, intron 1 of 6)	intron (NM_001385102, intron 1 of 6)	1551	NM_001385100	57596		NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding
190500	chr5	180370901	180371100	+	0	NA	Intergenic	Intergenic	-17664	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
2259	chr1	8913701	8914100	+	0	NA	Intergenic	Intergenic	-31968	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
66972	chr14	66070571	66070940	+	0	NA	Intergenic	Intergenic	-415616	NR_110307	440184		NM_001004331	ENSG00000196553	CCDC196	C14orf53|LINC00238|NCRNA00238	coiled-coil domain containing 196	protein-coding
45540	chr11	118760471	118760830	+	0	NA	intron (NM_004397, intron 7 of 13)	AluSg|SINE|Alu	30298	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
10140	chr1	59879651	59879950	+	0	NA	Intergenic	Intergenic	46973	NM_000775	1573		NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding
147543	chr20	59560751	59560850	+	0	NA	Intergenic	Intergenic	-16709	NM_001199505	116154		NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding
59769	chr13	30147771	30149500	+	0	NA	Intergenic	Intergenic	4439	NR_138041	102157400		NR_138041		LINC00384	-	long intergenic non-protein coding RNA 384	ncRNA
232913	chr9	136863271	136863430	+	0	NA	exon (NM_001281299, exon 3 of 5)	exon (NM_001281299, exon 3 of 5)	2958	NM_001281297	8721		NM_003792	ENSG00000107223	EDF1	CFAP280|EDF-1|MBF1	endothelial differentiation related factor 1	protein-coding
118682	chr19	37905121	37905380	+	0	NA	intron (NM_031951, intron 1 of 5)	AluSc5|SINE|Alu	1344	NM_001291088	83889		NM_031951	ENSG00000171804	WDR87	NYD-SP11	WD repeat domain 87	protein-coding
178215	chr4	142572251	142572350	+	0	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	-11545	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
47899	chr12	6747971	6748130	+	0	NA	TTS (NM_005439)	TTS (NM_005439)	4866	NM_005439	8079		NM_005439	ENSG00000089693	MLF2	NTN4	myeloid leukemia factor 2	protein-coding
235724	chrX	48914321	48914600	+	0	NA	exon (NM_006875, exon 5 of 6)	exon (NM_006875, exon 5 of 6)	-2502	NM_001282648	7355		NM_005660	ENSG00000102100	SLC35A2	CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL	solute carrier family 35 member A2	protein-coding
180020	chr5	1038421	1038500	+	0	NA	3' UTR (NM_033120, exon 10 of 10)	3' UTR (NM_033120, exon 10 of 10)	24514	NR_039778	100616479		NR_039778	ENSG00000263834	MIR4635	-	microRNA 4635	ncRNA
124780	chr2	7429771	7429930	+	0	NA	intron (NR_038432, intron 3 of 5)	LTR78|LTR|ERV1	8589	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
232282	chr9	134439301	134439830	+	0	NA	3' UTR (NM_002957, exon 10 of 10)	3' UTR (NM_002957, exon 10 of 10)	33005	NM_001291921	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
2488	chr1	9679071	9679580	+	0	NA	intron (NR_126367, intron 1 of 1)	AluSx|SINE|Alu	8249	NR_126367	101929074		NR_126366	ENSG00000231789	PIK3CD-AS2	-	PIK3CD antisense RNA 2	ncRNA
202528	chr6	158606151	158606330	+	0	NA	intron (NR_164859, intron 7 of 16)	intron (NR_164859, intron 7 of 16)	-3467	NR_106981	102465694		NR_106981	ENSG00000278571	MIR7161	hsa-mir-7161	microRNA 7161	ncRNA
149150	chr21	17797971	17798780	+	0	NA	intron (NM_017447, intron 2 of 4)	intron (NM_017447, intron 2 of 4)	-5866	NR_038871	246312		NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA
130848	chr2	87290851	87291200	+	0	NA	Intergenic	Intergenic	96239	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
85055	chr16	31974271	31974450	+	0	NA	Intergenic	Intergenic	100553	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
13094	chr1	111602651	111603350	+	0	NA	intron (NR_034126, intron 3 of 4)	intron (NR_034126, intron 3 of 4)	5318	NR_034126	100129269		NR_034126		LINC01160	-	long intergenic non-protein coding RNA 1160	ncRNA
170	chr1	614871	615230	+	0	NA	Intergenic	Intergenic	13959	NR_125957	101928626		NR_125957	ENSG00000293331	LOC101928626	-	uncharacterized LOC101928626	ncRNA
231446	chr9	131264021	131264750	+	0	NA	intron (NM_033387, intron 1 of 1)	intron (NM_033387, intron 1 of 1)	12125	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
23019	chr1	226308451	226309700	+	0	NA	promoter-TSS (NM_001366245)	promoter-TSS (NM_001366245)	89	NM_001366245	286826		NM_173083	ENSG00000183814	LIN9	BARA|BARPsv|Lin-9|TGS|TGS1|TGS2	lin-9 DREAM MuvB core complex component	protein-coding
227167	chr9	86723221	86723580	+	0	NA	Intergenic	Intergenic	224106	NM_002048	2619		NM_002048	ENSG00000180447	GAS1	-	growth arrest specific 1	protein-coding
225974	chr9	41191121	41191380	+	0	NA	Intergenic	Intergenic	-1849	NM_001286836	220869		NM_001024916	ENSG00000147996	ZNG1E	CBWD3|CBWD5|DC36	Zn regulated GTPase metalloprotein activator 1E	protein-coding
54155	chr12	76569701	76570300	+	0	NA	Intergenic	Intergenic	-10229	NM_001319653	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
122962	chr19	50779471	50780380	+	0	NA	Intergenic	L2b|LINE|L2	6235	NM_001384597	105372440		NM_001384597	ENSG00000261341	SMIM47	-	small integral membrane protein 47	protein-coding
108961	chr18	79522351	79522900	+	0	NA	intron (NM_172387, intron 9 of 9)	intron (NM_172387, intron 9 of 9)	-56657	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
64903	chr14	35398271	35398430	+	0	NA	Intergenic	Intergenic	6399	NM_020529	4792		NM_020529	ENSG00000100906	NFKBIA	EDAID2|IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding
9119	chr1	45341971	45342130	+	0	NA	exon (NM_025077, exon 5 of 8)	exon (NM_025077, exon 5 of 8)	-1580	NM_001350650	4595		NM_012222	ENSG00000132781	MUTYH	MYH	mutY DNA glycosylase	protein-coding
200906	chr6	139131171	139131330	+	0	NA	Intergenic	Intergenic	-3830	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
201553	chr6	149234071	149235280	+	0	NA	intron (NM_001292035, intron 2 of 6)	L3|LINE|CR1	16749	NM_001292035	23118		NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein-coding
144292	chr20	34703421	34706300	+	0	NA	intron (NM_001329431, intron 1 of 4)	intron (NM_001329431, intron 1 of 4)	141	NM_001329431	58476		NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding
177835	chr4	127622971	127623530	+	0	NA	Intergenic	CpG	-9707	NM_015693	27152		NM_015693	ENSG00000164066	INTU	CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20	inturned planar cell polarity protein	protein-coding
138554	chr2	207619751	207620430	+	0	NA	intron (NM_001330134, intron 3 of 3)	intron (NM_001330134, intron 3 of 3)	4898	NM_145280	151194		NM_145280	ENSG00000144401	METTL21A	FAM119A|HCA557b|HSPA-KMT	methyltransferase 21A, HSPA lysine	protein-coding
123354	chr19	53878971	53880280	+	0	NA	Intergenic	CpG	-2572	NM_001316329	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
113301	chr19	8562001	8562400	+	0	NA	intron (NM_012335, intron 1 of 27)	AluYf1|SINE|Alu	15242	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
215671	chr8	690451	690750	+	0	NA	intron (NM_207332, intron 3 of 5)	intron (NM_207332, intron 3 of 5)	40624	NM_207332	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
100150	chr17	58530801	58531000	+	0	NA	intron (NM_001368771, intron 2 of 13)	intron (NM_001368771, intron 2 of 13)	1184	NM_080415	5414		NM_004574	ENSG00000108387	SEPTIN4	ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|Septin-4|hCDCREL-2|hucep-7	septin 4	protein-coding
113034	chr19	7941301	7942430	+	0	NA	intron (NM_006351, intron 1 of 12)	intron (NM_006351, intron 1 of 12)	1801	NM_006351	10469		NM_006351	ENSG00000104980	TIMM44	TIM44	translocase of inner mitochondrial membrane 44	protein-coding
235623	chrX	48083221	48083480	+	0	NA	Intergenic	ERVL47-int|LTR|ERVL	-11692	NM_001190255	57232		NM_001037735	ENSG00000221994	ZNF630	dJ54B20.2	zinc finger protein 630	protein-coding
6561	chr1	28671351	28671450	+	0	NA	intron (NM_024482, intron 1 of 9)	AluSc8|SINE|Alu	2616	NM_001319674	10691		NM_006582	ENSG00000162419	GMEB1	P96PIF|PIF96	glucocorticoid modulatory element binding protein 1	protein-coding
200656	chr6	137046301	137046500	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-1220	NM_014432	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
39043	chr11	47853151	47853830	+	0	NA	Intergenic	Intergenic	-4946	NM_015231	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
189853	chr5	177124371	177124730	+	0	NA	Intergenic	Intergenic	-8529	NM_172349	64324		NM_022455	ENSG00000165671	NSD1	ARA267|KMT3B|SOTOS|SOTOS1|STO	nuclear receptor binding SET domain protein 1	protein-coding
188776	chr5	157717221	157717680	+	0	NA	Intergenic	Intergenic	-13970	NM_001317825	54974		NM_017872	ENSG00000113272	THG1L	ICF45|IHG-1|IHG1|SCAR28|THG1|hTHG1	tRNA-histidine guanylyltransferase 1 like	protein-coding
44113	chr11	96019401	96019600	+	0	NA	intron (NM_032427, intron 2 of 4)	intron (NM_032427, intron 2 of 4)	-95393	NM_001243571	8898		NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding
209625	chr7	77723771	77724130	+	0	NA	intron (NM_198467, intron 1 of 7)	AluJo|SINE|Alu	-26605	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
91554	chr17	5044301	5044700	+	0	NA	Intergenic	Intergenic	-9068	NM_001104577	55065		NM_017986	ENSG00000132517	SLC52A1	GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1|huPAR-2	solute carrier family 52 member 1	protein-coding
88493	chr16	85158701	85159100	+	0	NA	Intergenic	Intergenic	21750	NR_033984	400548		NR_033984	ENSG00000278214	LINC02139	-	long intergenic non-protein coding RNA 2139	ncRNA
34383	chr10	132320251	132320550	+	0	NA	intron (NM_001318878, intron 1 of 11)	MER67A|LTR|ERV1	11480	NM_001318882	282974		NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding
156782	chr22	41900251	41901530	+	0	NA	promoter-TSS (NR_029507)	promoter-TSS (NR_029507)	-54	NR_029507	407039		NR_029507	ENSG00000207932	MIR33A	MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a	microRNA 33a	ncRNA
170565	chr3	186800251	186801100	+	0	NA	intron (NM_002916, intron 3 of 10)	intron (NM_002916, intron 3 of 10)	5807	NM_002916	5984		NM_002916	ENSG00000163918	RFC4	A1|RFC37	replication factor C subunit 4	protein-coding
53605	chr12	68080601	68081000	+	0	NA	Intergenic	Intergenic	78940	NM_000619	3458		NM_000619	ENSG00000111537	IFNG	IFG|IFI|IMD69	interferon gamma	protein-coding
125926	chr2	25127871	25128550	+	0	NA	exon (NM_001319099, exon 6 of 23)	exon (NM_001319099, exon 6 of 23)	40370	NM_000939	5443		NM_000939	ENSG00000115138	POMC	ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC	proopiomelanocortin	protein-coding
111966	chr19	4836921	4837180	+	0	NA	Intergenic	AluY|SINE|Alu	-5338	NM_001385678	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
36792	chr11	9502151	9502650	+	0	NA	intron (NM_001282656, intron 11 of 15)	AluY|SINE|Alu	41388	NM_003442	7702		NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding
37269	chr11	14670951	14671680	+	0	NA	intron (NM_001363569, intron 1 of 15)	L2a|LINE|L2	27511	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
72439	chr15	31650151	31650530	+	0	NA	intron (NR_038253, intron 5 of 7)	L1ME1|LINE|L1	220333	NM_001382637	161725		NM_130901	ENSG00000169918	OTUD7A	C15orf16|C16ORF15|CEZANNE2|NEDHS|OTUD7	OTU deubiquitinase 7A	protein-coding
25733	chr10	9058571	9058730	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	160661	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
20971	chr1	202600271	202600430	+	0	NA	intron (NM_177402, intron 7 of 8)	intron (NM_177402, intron 7 of 8)	43103	NM_001136504	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
142644	chr20	5760551	5761080	+	0	NA	intron (NM_152504, intron 1 of 2)	L2|LINE|L2	10414	NM_001303479	149840		NM_152504	ENSG00000171984	SHLD1	C20orf196|RINN3	shieldin complex subunit 1	protein-coding
192014	chr6	16409401	16410180	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	171203	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
91042	chr17	2883451	2884150	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	82095	NR_110818	101927911		NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA
194885	chr6	34670851	34671230	+	0	NA	intron (NM_022758, intron 1 of 3)	intron (NM_022758, intron 1 of 3)	-25114	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
236820	chrX	79175921	79176750	+	0	NA	Intergenic	Intergenic	31647	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
20302	chr1	197200471	197202250	+	0	NA	promoter-TSS (NM_001257965)	promoter-TSS (NM_001257965)	-67	NM_194314	360023		NM_194314	ENSG00000177888	ZBTB41	FRBZ1|ZNF924	zinc finger and BTB domain containing 41	protein-coding
75922	chr15	70098901	70100100	+	0	NA	Intergenic	CpG-8376	-1583	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
137425	chr2	196459451	196459750	+	0	NA	intron (NM_001348768, intron 1 of 28)	MER72|LTR|ERV1	-97423	NM_001304840	57520		NM_020760	ENSG00000138411	HECW2	NDHSAL|NEDL2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
148826	chr21	8385401	8386150	+	0	NA	intron (NR_038958, intron 2 of 6).2	AluSp|SINE|Alu	-2587	NR_128717	103504733		NR_128717	ENSG00000275692	MIR6724-4	hsa-mir-6724-4	microRNA 6724-4	ncRNA
75893	chr15	69762651	69762980	+	0	NA	Intergenic	Intergenic	-72419	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
113807	chr19	10577221	10577630	+	0	NA	intron (NM_001300887, intron 8 of 11)	AluY|SINE|Alu	-8446	NM_079421	1032		NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding
197183	chr6	63573101	63574000	+	0	NA	intron (NM_001385267, intron 1 of 5)	CpG	1070	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
22154	chr1	212132071	212132430	+	0	NA	Intergenic	Intergenic	54637	NR_036068	100422947		NR_036068	ENSG00000264358	MIR3122	mir-3122	microRNA 3122	ncRNA
122616	chr19	49804571	49805330	+	0	NA	intron (NM_014203, intron 19 of 23)	AluJo|SINE|Alu	8342	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
170472	chr3	185931951	185932530	+	0	NA	intron (NM_004593, intron 1 of 8)	intron (NM_004593, intron 1 of 8)	5774	NM_001243879	6434		NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog	protein-coding
222110	chr8	131903271	131905010	+	0	NA	promoter-TSS (NM_001323553)	promoter-TSS (NM_001323553)	47	NM_015137	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
19032	chr1	169684801	169685400	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	23757	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
175538	chr4	74623101	74623300	+	0	NA	Intergenic	Intergenic	171323	NM_001316963	685		NM_001729	ENSG00000174808	BTC	-	betacellulin	protein-coding
191061	chr6	3352021	3352280	+	0	NA	intron (NM_001382320, intron 1 of 1)	intron (NM_001382320, intron 1 of 1)	-28000	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
36981	chr11	11848151	11848580	+	0	NA	intron (NM_001372101, intron 1 of 26)	Tigger3a|DNA|TcMar-Tigger	6393	NM_001372099	55031		NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding
13968	chr1	120442451	120442850	+	0	NA	intron (NM_001037501, intron 8 of 22)	intron (NM_001037501, intron 8 of 22)	-8541	NR_003242	767846		NR_003242	ENSG00000293296	PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo
21046	chr1	203172201	203172500	+	0	NA	intron (NM_004997, intron 3 of 10)	intron (NM_004997, intron 3 of 10)	3476	NM_004997	4608		NM_004997	ENSG00000133055	MYBPH	-	myosin binding protein H	protein-coding
126291	chr2	27207621	27208750	+	0	NA	intron (NR_028323, intron 2 of 16)	intron (NR_028323, intron 2 of 16)	4083	NM_021095	8884		NM_021095	ENSG00000138074	SLC5A6	COMNB|NERIB|SMVT|SMVTD|hSMVT	solute carrier family 5 member 6	protein-coding
20748	chr1	200979471	200980200	+	0	NA	intron (NM_017596, intron 28 of 33)	intron (NM_017596, intron 28 of 33)	43879	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
185554	chr5	131365721	131366280	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	101947	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
24071	chr1	235317251	235317550	+	0	NA	intron (NM_016374, intron 2 of 23)	intron (NM_016374, intron 2 of 23)	-9816	NM_001371477	9453		NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1|MDHLO|MUDHLOV	geranylgeranyl diphosphate synthase 1	protein-coding
110278	chr19	1819351	1819450	+	0	NA	intron (NM_020695, intron 7 of 15)	intron (NM_020695, intron 7 of 15)	-2689	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
207728	chr7	48045251	48045750	+	0	NA	intron (NM_001267866, intron 3 of 6)	(CCTCTGC)n|Simple_repeat|Simple_repeat	9957	NM_001267866	136288		NM_001100159	ENSG00000164746	C7orf57	-	chromosome 7 open reading frame 57	protein-coding
133085	chr2	112480221	112481500	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-1296	NM_001371712	150465		NM_153712	ENSG00000114999	TTL	-	tubulin tyrosine ligase	protein-coding
28315	chr10	46272051	46273180	+	0	NA	Intergenic	Intergenic	-3007	NR_103827	100996567		NR_103827		ANTXRLP1	-	ANTXR like pseudogene 1	pseudo
158549	chr3	4350671	4351950	+	0	NA	Intergenic	Intergenic	48006	NM_006515	6419		NM_006515	ENSG00000170364	SETMAR	METNASE|Mar1	SET domain and mariner transposase fusion gene	protein-coding
52740	chr12	56633671	56633830	+	0	NA	intron (NM_001351156, intron 1 of 30)	AluSz6|SINE|Alu	2609	NM_001351156	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
182271	chr5	57207101	57207750	+	0	NA	intron (NM_001331037, intron 2 of 12)	LTR1A2|LTR|ERV1	-6649	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
135776	chr2	169693701	169695500	+	0	NA	promoter-TSS (NM_001085447)	promoter-TSS (NM_001085447)	131	NM_001199290	100526832		NM_001199290	ENSG00000213160	PHOSPHO2-KLHL23	-	PHOSPHO2-KLHL23 readthrough	protein-coding
142743	chr20	10431921	10432350	+	0	NA	promoter-TSS (NM_018848)	promoter-TSS (NM_018848)	-210	NM_018848	8195		NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	MKKS centrosomal shuttling protein	protein-coding
153672	chr22	29030271	29031080	+	0	NA	intron (NR_046851, intron 2 of 2)	CpG	801	NR_046851	100874123		NR_046851	ENSG00000177993	ZNRF3-AS1	-	ZNRF3 antisense RNA 1	ncRNA
217253	chr8	27308221	27308930	+	0	NA	intron (NM_171982, intron 1 of 5)	intron (NM_171982, intron 1 of 5)	2697	NM_001362813	23087		NM_171982	ENSG00000104228	TRIM35	HLS5|MAIR	tripartite motif containing 35	protein-coding
90306	chr17	1080571	1081250	+	0	NA	intron (NM_001322840, intron 5 of 22).2	intron (NM_001322840, intron 5 of 22).2	-1917	NM_001282149	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
92863	chr17	16382901	16383300	+	0	NA	TTS (NM_001281719)	TTS (NM_001281719)	1635	NM_001281717	7314		NM_018955	ENSG00000170315	UBB	HEL-S-50	ubiquitin B	protein-coding
90455	chr17	1376751	1376930	+	0	NA	intron (NR_024058, intron 1 of 6)	intron (NR_024058, intron 1 of 6)	23382	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
145012	chr20	37718271	37718430	+	0	NA	intron (NM_030877, intron 1 of 15)	SVA_D|Retroposon|SVA	24320	NM_030877	56259		NM_030877	ENSG00000132792	CTNNBL1	C20orf33|IMD99|NAP|P14L|PP8304|dJ633O20.1	catenin beta like 1	protein-coding
188749	chr5	157557771	157557930	+	0	NA	intron (NM_033274, intron 3 of 22)	MLT1A0|LTR|ERVL-MaLR	17925	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
195642	chr6	37862401	37862600	+	0	NA	intron (NM_021943, intron 1 of 5)	AluJo|SINE|Alu	42773	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
155754	chr22	39207171	39208100	+	0	NA	Intergenic	Intergenic	33274	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
77558	chr15	84817051	84817550	+	0	NA	promoter-TSS (NM_020778)	promoter-TSS (NM_020778)	-56	NM_020778	57538		NM_020778	ENSG00000136383	ALPK3	CMH27|MAK|MIDORI	alpha kinase 3	protein-coding
3430	chr1	15853451	15853550	+	0	NA	intron (NM_015001, intron 1 of 14)	(TATTTT)n|Simple_repeat|Simple_repeat	-5353	NR_024279	729614		NR_024279	ENSG00000179743	SPEN-AS1	-	SPEN antisense RNA 1	ncRNA
76494	chr15	74930621	74931300	+	0	NA	intron (NM_004255, intron 1 of 4)	AluY|SINE|Alu	7113	NM_004255	9377		NM_004255	ENSG00000178741	COX5A	COX|COX-VA|MC4DN20|VA	cytochrome c oxidase subunit 5A	protein-coding
199436	chr6	117463851	117464350	+	0	NA	Intergenic	L1MD1|LINE|L1	-18504	NM_173674	285761		NM_173674	ENSG00000164465	DCBLD1	dJ94G16.1	discoidin, CUB and LCCL domain containing 1	protein-coding
80284	chr16	2248801	2249000	+	0	NA	intron (NM_001178029, intron 2 of 6)	L1MB5|LINE|L1	2687	NM_001178029	1632		NM_001919	ENSG00000167969	ECI1	DCI	enoyl-CoA delta isomerase 1	protein-coding
122134	chr19	48856921	48857650	+	0	NA	intron (NM_001161354, intron 8 of 16)	MLT1C|LTR|ERVL-MaLR	11332	NM_020904	57664		NM_020904	ENSG00000105559	PLEKHA4	PEPP1	pleckstrin homology domain containing A4	protein-coding
162310	chr3	47420851	47421780	+	0	NA	intron (NM_001320044, intron 7 of 19)	intron (NM_001320044, intron 7 of 19)	40294	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
203206	chr6	167815421	167815880	+	0	NA	Intergenic	Intergenic	-10914	NM_001366320	4301		NM_005936	ENSG00000130396	AFDN	AF6|MLL-AF6|MLLT4|l-afadin	afadin, adherens junction formation factor	protein-coding
167955	chr3	136551201	136551500	+	0	NA	intron (NM_005862, intron 5 of 33)	AluJb|SINE|Alu	201028	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
8204	chr1	39609601	39610150	+	0	NA	Intergenic	L2a|LINE|L2	29768	NM_014571	26508		NM_014571	ENSG00000163909	HEYL	HESR3|HEY3|HRT3|bHLHb33	hes related family bHLH transcription factor with YRPW motif like	protein-coding
211148	chr7	102558771	102559300	+	0	NA	intron (NM_001031618, intron 6 of 8).2	intron (NM_001031618, intron 6 of 8).2	7803	NM_001031618	441273		NM_001031618	ENSG00000205238	SPDYE2	SPDYB2-L1|SPDYB2L1	speedy/RINGO cell cycle regulator family member E2	protein-coding
170104	chr3	183157971	183158130	+	0	NA	intron (NM_014398, intron 1 of 5)	intron (NM_014398, intron 1 of 5)	4684	NM_014398	27074		NM_014398	ENSG00000078081	LAMP3	CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403	lysosomal associated membrane protein 3	protein-coding
239121	chrY	11300851	11301250	+	0	NA	Intergenic	(ATTCC)n|Simple_repeat|Simple_repeat	1120540	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
124852	chr2	7841801	7842000	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	57755	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
61228	chr13	49652701	49653000	+	0	NA	Intergenic	Intergenic	24343	NM_138450	115761		NM_138450	ENSG00000152213	ARL11	ARLTS1	ADP ribosylation factor like GTPase 11	protein-coding
219173	chr8	66526821	66527130	+	0	NA	Intergenic	L1MB2|LINE|L1	33409	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
94037	chr17	27300621	27301080	+	0	NA	intron (NM_134265, intron 1 of 6)	AluSz6|SINE|Alu	6736	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
167605	chr3	129572071	129572230	+	0	NA	intron (NM_015103, intron 15 of 35)	L2b|LINE|L2	23765	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
33745	chr10	122420251	122420580	+	0	NA	intron (NR_165165, intron 9 of 12)	L1MC5|LINE|L1	3450	NR_037506	100500866		NR_037506	ENSG00000265442	MIR3941	-	microRNA 3941	ncRNA
227239	chr9	89312221	89313080	+	0	NA	TTS (NR_036108)	TTS (NR_036108)	425	NR_036108	100422936		NR_036108	ENSG00000265112	MIR3153	mir-3153	microRNA 3153	ncRNA
205592	chr7	21507601	21507880	+	0	NA	intron (NM_003112, intron 5 of 5)	HERVP71A-int|LTR|ERV1	-35299	NM_001277115	8701		NM_001277115	ENSG00000105877	DNAH11	CILD7|DNAHBL|DNAHC11|DNHBL|DPL11	dynein axonemal heavy chain 11	protein-coding
51834	chr12	53456721	53457550	+	0	NA	intron (NM_031989, intron 5 of 14)	AluJr|SINE|Alu	5033	NM_001098620	5094		NM_005016	ENSG00000197111	PCBP2	HNRNPE2|HNRPE2|hnRNP-E2	poly(rC) binding protein 2	protein-coding
101477	chr17	67486721	67487950	+	0	NA	intron (NM_181671, intron 1 of 9)	AluSz|SINE|Alu	-15750	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
231479	chr9	131360071	131360230	+	0	NA	Intergenic	AluSq2|SINE|Alu	-13501	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
60871	chr13	46047951	46049000	+	0	NA	intron (NM_001330565, intron 1 of 18)	AluY|SINE|Alu	4271	NM_001382208	23091		NM_015070	ENSG00000123200	ZC3H13	KIAA0853|Xio	zinc finger CCCH-type containing 13	protein-coding
167861	chr3	134358571	134358730	+	0	NA	exon (NM_016201, exon 9 of 10)	exon (NM_016201, exon 9 of 10)	9212	NR_106885	102466744		NR_106885		MIR6827	hsa-mir-6827	microRNA 6827	ncRNA
178493	chr4	150252471	150252700	+	0	NA	intron (NM_001040261, intron 16 of 16)	intron (NM_001040261, intron 16 of 16)	174140	NR_036614	166614		NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
51017	chr12	49706581	49708180	+	0	NA	promoter-TSS (NM_001367835)	promoter-TSS (NM_001367835)	25	NM_198900	91010		NM_175736	ENSG00000161791	FMNL3	FHOD3|FRL2|WBP-3|WBP3	formin like 3	protein-coding
94814	chr17	31313321	31315050	+	0	NA	promoter-TSS (NM_006495)	promoter-TSS (NM_006495)	-131	NM_006495	2124		NM_006495	ENSG00000185862	EVI2B	CD361|D17S376|EVDB	ecotropic viral integration site 2B	protein-coding
93664	chr17	19215121	19215630	+	0	NA	promoter-TSS (NR_160285).3	promoter-TSS (NR_160285).3	-255	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
113586	chr19	10275401	10275600	+	0	NA	intron (NM_000201, intron 2 of 6)	AluSx1|SINE|Alu	4380	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
47525	chr12	4155671	4155830	+	0	NA	Intergenic	AluSc|SINE|Alu	-118012	NM_001759	894		NM_001759	ENSG00000118971	CCND2	KIAK0002|MPPH3	cyclin D2	protein-coding
151918	chr22	19027221	19027680	+	0	NA	intron (NR_110533, intron 5 of 5)	intron (NR_110533, intron 5 of 5)	4826	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
111998	chr19	4968051	4969500	+	0	NA	promoter-TSS (NM_015015)	promoter-TSS (NM_015015)	-338	NM_001370093	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
221889	chr8	128558351	128558650	+	0	NA	TTS (NR_121673)	TTS (NR_121673)	6179	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
172569	chr4	2441551	2442600	+	0	NA	intron (NM_001193282, intron 4 of 15)	intron (NM_001193282, intron 4 of 15)	23120	NM_001193282	402160		NM_001193282	ENSG00000206113	CFAP99	-	cilia and flagella associated protein 99	protein-coding
192387	chr6	24720601	24722430	+	0	NA	Intergenic	CpG	-2361	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
11189	chr1	87450801	87451200	+	0	NA	Intergenic	Intergenic	-79345	NR_038324	100505768		NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA
155653	chr22	39005201	39005400	+	0	NA	Intergenic	MER21A|LTR|ERVL	-7080	NR_104187	100874530		NR_104187	ENSG00000249310	APOBEC3B-AS1	-	APOBEC3B antisense RNA 1	ncRNA
181647	chr5	50328271	50328700	+	0	NA	Intergenic	MER90a|LTR|ERV1	112803	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
15181	chr1	149157421	149158030	+	0	NA	Intergenic	Intergenic	43421	NR_037182	653513		NR_037182		LOC653513	-	phosphodiesterase 4D interacting protein-like	pseudo
32600	chr10	103585751	103586050	+	0	NA	intron (NM_004210, intron 4 of 5)	MIRc|SINE|MIR	-68458	NR_120675	102724341		NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
164539	chr3	63950371	63950730	+	0	NA	intron (NM_001177387, intron 3 of 12)	intron (NM_001177387, intron 3 of 12)	-17244	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
210937	chr7	101249671	101250030	+	0	NA	Intergenic	AluSz|SINE|Alu	-4769	NM_016068	51024		NM_016068	ENSG00000214253	FIS1	CGI-135|TTC11	fission, mitochondrial 1	protein-coding
169708	chr3	172106971	172108030	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	66969	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
213169	chr7	132425401	132425800	+	0	NA	intron (NM_001105543, intron 3 of 3)	(AGGC)n|Simple_repeat|Simple_repeat	150870	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
186582	chr5	138498801	138499500	+	0	NA	Intergenic	MER21C|LTR|ERVL	33671	NM_001964	1958		NM_001964	ENSG00000120738	EGR1	AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225	early growth response 1	protein-coding
99410	chr17	50035571	50035730	+	0	NA	Intergenic	Intergenic	20089	NR_038230	284080		NR_038230	ENSG00000246640	PICART1	-	p53 inducible cancer associated RNA transcript 1	ncRNA
40581	chr11	64370201	64370650	+	0	NA	intron (NM_003942, intron 15 of 16)	CpG-4408	1823	NR_031602	100302280		NR_031602	ENSG00000221273	MIR1237	MIRN1237|hsa-mir-1237	microRNA 1237	ncRNA
60178	chr13	40215701	40216100	+	0	NA	intron (NR_033877, intron 1 of 5)	intron (NR_033877, intron 1 of 5)	4602	NR_033877	400123		NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA
90937	chr17	2618921	2619400	+	0	NA	intron (NM_000430, intron 1 of 10)	AluJo|SINE|Alu	25506	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
13324	chr1	113769201	113769500	+	0	NA	intron (NM_018364, intron 4 of 6)	intron (NM_018364, intron 4 of 6)	-9462	NM_001323042	10745		NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding
155903	chr22	39544771	39544930	+	0	NA	Intergenic	AluSx|SINE|Alu	-12102	NM_194326	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
172680	chr4	2742521	2743200	+	0	NA	intron (NM_001292016, intron 4 of 4)	intron (NM_001292016, intron 4 of 4)	13476	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
83379	chr16	26269871	26270030	+	0	NA	Intergenic	Intergenic	244713	NR_036146	100422923		NR_036146	ENSG00000265005	MIR548W	-	microRNA 548w	ncRNA
15888	chr1	151536451	151536950	+	0	NA	intron (NM_020770, intron 19 of 20)	intron (NM_020770, intron 19 of 20)	-3609	NM_001126337	7286		NM_020127	ENSG00000143367	TUFT1	WHSF	tuftelin 1	protein-coding
199897	chr6	127857251	127857850	+	0	NA	intron (NM_001164687, intron 1 of 5).2	intron (NM_001164687, intron 1 of 5).2	-2362	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
146357	chr20	49260321	49260580	+	0	NA	intron (NM_021035, intron 7 of 13)	intron (NM_021035, intron 7 of 13)	17607	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
228819	chr9	111992571	111992750	+	0	NA	Intergenic	MamGyp-int|LTR|Gypsy	60560	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
158988	chr3	10284151	10285000	+	0	NA	non-coding (NR_026829, exon 1 of 1)	non-coding (NR_026829, exon 1 of 1)	156	NR_026829	84657		NM_032570	ENSG00000231177	LINC00852	C3orf42|GHRL-AS2|GHRLOS2|NAG73	long intergenic non-protein coding RNA 852	ncRNA
200483	chr6	135227321	135227580	+	0	NA	Intergenic	MER51A|LTR|ERV1	-11710	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
217463	chr8	28744951	28745300	+	0	NA	intron (NR_073468, intron 4 of 4)	FAM|SINE|Alu	43624	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
216787	chr8	22527101	22527630	+	0	NA	intron (NM_005605, intron 8 of 13)	intron (NM_005605, intron 8 of 13)	-24562	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
21025	chr1	202965471	202965930	+	0	NA	intron (NM_016243, intron 4 of 8)	AluSq|SINE|Alu	1557	NM_016243	51706		NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
96319	chr17	40010151	40010450	+	0	NA	Intergenic	Intergenic	-5140	NR_168490	1440		NM_000759	ENSG00000108342	CSF3	C17orf33|CSF3OS|GCSF	colony stimulating factor 3	protein-coding
80133	chr16	2079771	2080530	+	0	NA	intron (NM_001370404, intron 28 of 40)	intron (NM_001370404, intron 28 of 40)	10134	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
183178	chr5	75513121	75513400	+	0	NA	intron (NM_001345921, intron 1 of 13)	MamRep605|LTR?|LTR?	-1279	NM_001130105	10087		NM_005713	ENSG00000113163	CERT1	CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11	ceramide transporter 1	protein-coding
86790	chr16	67809401	67809600	+	0	NA	intron (NM_018430, intron 1 of 15)	AluSz6|SINE|Alu	2611	NM_001351158	55815		NM_018430	ENSG00000102904	TSNAXIP1	TXI1	translin associated factor X interacting protein 1	protein-coding
215231	chr7	156876651	156877300	+	0	NA	intron (NR_146958, intron 1 of 14)	L1PB1|LINE|L1	16208	NM_001363412	64327		NM_022458	ENSG00000105983	LMBR1	ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|TPTPS|ZRS	limb development membrane protein 1	protein-coding
69520	chr14	96296871	96297300	+	0	NA	intron (NM_018036, intron 34 of 41)	L1ME3E|LINE|L1	40875	NM_000710	623		NM_000710	ENSG00000100739	BDKRB1	B1BKR|B1R|BKB1R|BKR1|BRADYB1	bradykinin receptor B1	protein-coding
197323	chr6	73264471	73264730	+	0	NA	intron (NM_001251874, intron 2 of 4)	intron (NM_001251874, intron 2 of 4)	-1404	NM_030568	80759		NM_030568	ENSG00000135314	KHDC1	C6orf147|C6orf148|Em:AC019205.8|NDG1|bA257K9.4	KH domain containing 1	protein-coding
129553	chr2	69828871	69831050	+	0	NA	exon (NM_178439, exon 1 of 14)	exon (NM_178439, exon 1 of 14)	300	NM_178439	64395		NM_178439	ENSG00000087338	GMCL1	BTBD13|GCL|GCL1|SPATA29	germ cell-less 1, spermatogenesis associated	protein-coding
130414	chr2	85342321	85342830	+	0	NA	3' UTR (NM_017750, exon 11 of 11)	3' UTR (NM_017750, exon 11 of 11)	11953	NM_017750	54884		NM_017750	ENSG00000042445	RETSAT	-	retinol saturase	protein-coding
157709	chr22	46402421	46402880	+	0	NA	intron (NM_001378328, intron 9 of 34)	L1MEg|LINE|L1	66936	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
19018	chr1	169649351	169649450	+	0	NA	Intergenic	L1MC1|LINE|L1	-19276	NM_003005	6403		NM_003005	ENSG00000174175	SELP	CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL	selectin P	protein-coding
126750	chr2	30231901	30233670	+	0	NA	intron (NM_030915, intron 1 of 2)	CpG	1251	NM_030915	81606		NM_030915	ENSG00000213626	LBH	-	LBH regulator of WNT signaling pathway	protein-coding
97998	chr17	45302701	45303330	+	0	NA	intron (NM_003954, intron 1 of 15)	intron (NM_003954, intron 1 of 15)	14005	NM_003954	9020		NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|IMD112|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding
227646	chr9	92956771	92957750	+	0	NA	intron (NM_001083536, intron 1 of 17)	L1ME2|LINE|L1	-6701	NM_001286993	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
50771	chr12	49030901	49031100	+	0	NA	exon (NM_003482, exon 41 of 55)	exon (NM_003482, exon 41 of 55)	-12224	NM_002733	5571		NM_002733	ENSG00000181929	PRKAG1	AMPKG	protein kinase AMP-activated non-catalytic subunit gamma 1	protein-coding
197247	chr6	69835701	69836200	+	0	NA	Intergenic	Intergenic	-30606	NM_001858	1310		NM_001858	ENSG00000082293	COL19A1	COL9A1L|D6S228E	collagen type XIX alpha 1 chain	protein-coding
54048	chr12	75935671	75936030	+	0	NA	Intergenic	AluJr|SINE|Alu	95926	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
86765	chr16	67665721	67667080	+	0	NA	promoter-TSS (NM_001012984)	promoter-TSS (NM_001012984)	350	NM_032140	84080		NM_032140	ENSG00000124074	ENKD1	C16orf48|DAKV6410|FBB11	enkurin domain containing 1	protein-coding
55933	chr12	109894501	109894900	+	0	NA	Intergenic	AluSp|SINE|Alu	-5574	NM_001143852	84260		NM_032300	ENSG00000139437	TCHP	TpMs	trichoplein keratin filament binding	protein-coding
127140	chr2	37669301	37670200	+	0	NA	intron (NM_001371569, intron 1 of 1)	intron (NM_001371569, intron 1 of 1)	1892	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
61734	chr13	74131951	74132700	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	1604	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
78441	chr15	92816321	92816580	+	0	NA	Intergenic	AluY|SINE|Alu	20966	NR_033769	728619		NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
227990	chr9	95494141	95495600	+	0	NA	intron (NM_001354919, intron 2 of 4)	intron (NM_001354919, intron 2 of 4)	12329	NM_001083607	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
34533	chr10	132862771	132863130	+	0	NA	intron (NM_001200049, intron 35 of 57)	intron (NM_001200049, intron 35 of 57)	-76803	NM_177400	84504		NM_177400	ENSG00000148826	NKX6-2	GTX|NKX6.2|NKX6B|SPAX8	NK6 homeobox 2	protein-coding
85148	chr16	46392871	46393430	+	0	NA	Intergenic	Intergenic	175947	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
139211	chr2	219282921	219283680	+	0	NA	intron (NM_001039550, intron 7 of 9)	intron (NM_001039550, intron 7 of 9)	3934	NM_006736	3300		NM_006736	ENSG00000135924	DNAJB2	CMT2T|DSMA5|HMNR5|HSJ-1|HSJ1|HSPF3	DnaJ heat shock protein family (Hsp40) member B2	protein-coding
192292	chr6	20564301	20564850	+	0	NA	intron (NM_017774, intron 4 of 15)	intron (NM_017774, intron 4 of 15)	30118	NM_017774	54901		NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
124373	chr19	58377771	58377930	+	0	NA	intron (NM_138466, intron 1 of 2)	intron (NM_138466, intron 1 of 2)	3180	NR_049780	116412		NM_138466	ENSG00000152475	ZNF837	-	zinc finger protein 837	protein-coding
88516	chr16	85328271	85328800	+	0	NA	Intergenic	Intergenic	-22210	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
115307	chr19	14689251	14690550	+	0	NA	promoter-TSS (NM_001352243)	promoter-TSS (NM_001352243)	-148	NM_001352244	84449		NM_032433	ENSG00000160961	ZNF333	-	zinc finger protein 333	protein-coding
35489	chr11	1515201	1515810	+	0	NA	Intergenic	CpG	-28726	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
31481	chr10	96583151	96584000	+	0	NA	intron (NM_020123, intron 1 of 14)	MIR|SINE|MIR	3437	NM_020123	56889		NM_020123	ENSG00000077147	TM9SF3	EP70-P-iso|SMBP	transmembrane 9 superfamily member 3	protein-coding
213677	chr7	140060271	140061100	+	0	NA	intron (NR_130117, intron 1 of 10)	intron (NR_130117, intron 1 of 10)	2266	NM_022750	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
45417	chr11	118360821	118361550	+	0	NA	intron (NM_004788, intron 1 of 19)	AluSz|SINE|Alu	1585	NM_004788	9354		NM_004788	ENSG00000110344	UBE4A	E4|NEDHMS|UBOX2|UFD2	ubiquitination factor E4A	protein-coding
22940	chr1	225977551	225977930	+	0	NA	Intergenic	L2a|LINE|L2	21603	NM_152608	163859		NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding
9160	chr1	45549201	45549600	+	0	NA	Intergenic	AluSp|SINE|Alu	-1383	NM_001202413	10327		NM_006066	ENSG00000117448	AKR1A1	ALDR1|ALR|ARM|DD3|HEL-S-6	aldo-keto reductase family 1 member A1	protein-coding
161829	chr3	45656521	45657250	+	0	NA	intron (NM_014240, intron 2 of 7)	intron (NM_014240, intron 2 of 7)	31997	NR_033947	644714		NR_033947		LIMD1-AS1	-	LIMD1 antisense RNA 1	ncRNA
216619	chr8	22093271	22093430	+	0	NA	intron (NR_148728, intron 2 of 19)	L2|LINE|L2	4196	NR_148727	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
4599	chr1	22083201	22084380	+	0	NA	intron (NM_044472, intron 3 of 5)	L1M4|LINE|L1	31081	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
41350	chr11	65958721	65959300	+	0	NA	intron (NM_152762, intron 6 of 7)	intron (NM_152762, intron 6 of 7)	-2724	NM_005146	9092		NM_005146	ENSG00000175467	SART1	Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66	spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP	protein-coding
81849	chr16	11608771	11609330	+	0	NA	Intergenic	L1MB8|LINE|L1	-21584	NR_024320	9516		NM_004862	ENSG00000189067	LITAF	PIG7|SIMPLE|TP53I7	lipopolysaccharide induced TNF factor	protein-coding
50948	chr12	49513951	49514300	+	0	NA	intron (NR_120663, intron 10 of 14)	AluY|SINE|Alu	-24905	NM_001314030	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
85841	chr16	57011121	57011850	+	0	NA	intron (NR_169520, intron 1 of 47)	AluJo|SINE|Alu	21928	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
124079	chr19	55622121	55622850	+	0	NA	exon (NM_203374, exon 2 of 2)	exon (NM_203374, exon 2 of 2)	2081	NM_203374	147808		NM_203374	ENSG00000179922	ZNF784	-	zinc finger protein 784	protein-coding
203741	chr7	1153051	1153580	+	0	NA	intron (NR_158186, intron 4 of 4)	AluSz6|SINE|Alu	6881	NM_001365381	90637		NM_182491	ENSG00000178381	ZFAND2A	AIRAP	zinc finger AN1-type containing 2A	protein-coding
147630	chr20	62148571	62149130	+	0	NA	intron (NM_198935, intron 1 of 10)	intron (NM_198935, intron 1 of 10)	5081	NM_198935	26039		NM_015558	ENSG00000184402	SS18L1	CREST|LP2261|SMARCL2	SS18L1 subunit of BAF chromatin remodeling complex	protein-coding
62840	chr13	109784491	109785200	+	0	NA	exon (NM_003749, exon 1 of 2)	exon (NM_003749, exon 1 of 2)	1738	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
154880	chr22	37142651	37143200	+	0	NA	intron (NM_000878, intron 3 of 9)	intron (NM_000878, intron 3 of 9)	6991	NM_000878	3560		NM_000878	ENSG00000100385	IL2RB	CD122|IL15RB|IMD63|P70-75	interleukin 2 receptor subunit beta	protein-coding
176848	chr4	102592621	102593450	+	0	NA	intron (NM_001382625, intron 12 of 24)	L2c|LINE|L2	-90549	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
235519	chrX	47197001	47197280	+	0	NA	intron (NM_003334, intron 1 of 25)	intron (NM_003334, intron 1 of 25)	3311	NM_003334	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
17694	chr1	158125001	158125500	+	0	NA	Intergenic	Intergenic	15390	NR_033946	646268		NR_033946	ENSG00000231666	LINC01704	-	long intergenic non-protein coding RNA 1704	ncRNA
105517	chr17	83111751	83112600	+	0	NA	Intergenic	Intergenic	31029	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
46033	chr11	122667701	122668030	+	0	NA	intron (NM_032873, intron 1 of 13)	MIR3|SINE|MIR	12143	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
184635	chr5	107396471	107396830	+	0	NA	intron (NM_001962, intron 2 of 4)	intron (NM_001962, intron 2 of 4)	274287	NM_001962	1946		NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding
193489	chr6	30550621	30551000	+	0	NA	intron (NM_005275, intron 8 of 11)	L2a|LINE|L2	-5899	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
234722	chrX	21658371	21658830	+	0	NA	promoter-TSS (NM_153270)	promoter-TSS (NM_153270)	-270	NM_153270	257240		NM_153270	ENSG00000185915	KLHL34	-	kelch like family member 34	protein-coding
122220	chr19	48974071	48974650	+	0	NA	intron (NM_002103, intron 11 of 15)	intron (NM_002103, intron 11 of 15)	9051	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
49959	chr12	40192401	40192800	+	0	NA	Intergenic	MER4-int|LTR|ERV1	-32397	NM_198578	120892		NM_198578	ENSG00000188906	LRRK2	AURA17|DARDARIN|PARK8|RIPK7|ROCO2	leucine rich repeat kinase 2	protein-coding
144881	chr20	36921271	36921950	+	0	NA	intron (NM_001363733, intron 6 of 15)	AluSx|SINE|Alu	30098	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
40331	chr11	63916631	63917450	+	0	NA	5' UTR (NM_001363648, exon 1 of 11)	5' UTR (NM_001363648, exon 1 of 11)	124	NM_001363648	283248		NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding
192127	chr6	16752521	16752780	+	0	NA	intron (NR_152112, intron 1 of 1)	intron (NR_152112, intron 1 of 1)	7534	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
157631	chr22	46095151	46095700	+	0	NA	intron (NR_110479, intron 1 of 4)	intron (NR_110479, intron 1 of 4)	4381	NR_037413	100500828		NR_037413	ENSG00000266533	MIR3619	-	microRNA 3619	ncRNA
43744	chr11	86071251	86071350	+	0	NA	Intergenic	L2|LINE|L2	-1440	NM_001206947	8301		NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding
58327	chr12	131387351	131387650	+	0	NA	Intergenic	Intergenic	40030	NR_103736	338797		NM_001025466		LINC02370	-	long intergenic non-protein coding RNA 2370	ncRNA
47546	chr12	4285071	4285230	+	0	NA	intron (NM_001759, intron 3 of 4)	intron (NM_001759, intron 3 of 4)	-8966	NR_125790	103752584		NR_125790	ENSG00000255920	CCND2-AS1	CCND2-AS2	CCND2 antisense RNA 1	ncRNA
77847	chr15	88656871	88657100	+	0	NA	TTS (NM_002201)	TTS (NM_002201)	17969	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
71994	chr15	25846221	25846870	+	0	NA	intron (NM_024490, intron 1 of 20)	intron (NM_024490, intron 1 of 20)	2280	NR_039865	100616474		NR_039865	ENSG00000266517	MIR4715	-	microRNA 4715	ncRNA
37524	chr11	18621351	18621450	+	0	NA	intron (NM_194285, intron 1 of 5)	intron (NM_194285, intron 1 of 5)	12942	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
33726	chr10	122293851	122294550	+	0	NA	intron (NM_144587, intron 7 of 15)	intron (NM_144587, intron 7 of 15)	22904	NM_001318189	118663		NM_144587	ENSG00000138152	BTBD16	C10orf87	BTB domain containing 16	protein-coding
150932	chr21	44262301	44262630	+	0	NA	promoter-TSS (NM_013369)	promoter-TSS (NM_013369)	-568	NM_175867	29947		NM_013369	ENSG00000142182	DNMT3L	-	DNA methyltransferase 3 like	protein-coding
105491	chr17	83085721	83087030	+	0	NA	intron (NM_001004431, intron 2 of 3).2	intron (NM_001004431, intron 2 of 3).2	5229	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
187509	chr5	142358751	142359050	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	33607	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
239381	chrY	21022451	21022750	+	0	NA	Intergenic	LTR12D|LTR|ERV1	266492	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
141065	chr2	238261621	238262150	+	0	NA	intron (NM_022817, intron 11 of 22)	intron (NM_022817, intron 11 of 22)	-21847	NM_018645	55502		NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding
27619	chr10	32937101	32937480	+	0	NA	intron (NM_002211, intron 1 of 15)	AluSc|SINE|Alu	-1732	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
82602	chr16	18887601	18888400	+	0	NA	intron (NM_015092, intron 6 of 62)	AluSz|SINE|Alu	38408	NM_015092	23049		NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein-coding
224972	chr9	33078201	33078450	+	0	NA	Intergenic	Intergenic	-1651	NM_018225	55234		NM_018225	ENSG00000122692	SMU1	BWD|SMU-1|fSAP57	SMU1 DNA replication regulator and spliceosomal factor	protein-coding
136	chr1	515371	515730	+	0	NA	Intergenic	AluJr|SINE|Alu	-20105	NR_028322	100132287		NR_028322		LOC100132287	-	uncharacterized LOC100132287	ncRNA
232891	chr9	136844701	136845730	+	0	NA	exon (NM_001080482, exon 3 of 3)	exon (NM_001080482, exon 3 of 3)	2737	NM_001080482	389813		NM_001080482	ENSG00000232434	AJM1	C9orf172|ajm-1	apical junction component 1 homolog	protein-coding
166470	chr3	114233901	114234280	+	0	NA	TTS (NM_007136)	TTS (NM_007136)	3488	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
9811	chr1	53843521	53843780	+	0	NA	Intergenic	Intergenic	-5354	NM_001168551	55706		NM_018087	ENSG00000058804	NDC1	NET3|TMEM48	NDC1 transmembrane nucleoporin	protein-coding
119539	chr19	40588801	40589780	+	0	NA	intron (NM_138392, intron 15 of 17)	intron (NM_138392, intron 15 of 17)	-3876	NM_003573	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
114708	chr19	13152601	13153800	+	0	NA	exon (NM_004907, exon 2 of 2)	exon (NM_004907, exon 2 of 2)	2789	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
91683	chr17	5592421	5592900	+	0	NA	Intergenic	Intergenic	-8151	NM_014922	22861		NM_014922	ENSG00000091592	NLRP1	AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|JRRP|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1	NLR family pyrin domain containing 1	protein-coding
69671	chr14	98103471	98104230	+	0	NA	Intergenic	Intergenic	-125726	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
230430	chr9	128151521	128151780	+	0	NA	exon (NM_005564, exon 3 of 7)	exon (NM_005564, exon 3 of 7)	2197	NM_005564	3934		NM_005564	ENSG00000148346	LCN2	24p3|MSFI|NGAL|p25	lipocalin 2	protein-coding
145294	chr20	41038771	41039550	+	0	NA	intron (NM_003286, intron 2 of 20)	intron (NM_003286, intron 2 of 20)	10338	NM_003286	7150		NM_003286	ENSG00000198900	TOP1	TOPI	DNA topoisomerase I	protein-coding
105760	chr18	2773721	2773980	+	0	NA	intron (NM_015295, intron 41 of 47)	AluSx|SINE|Alu	-73156	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
197029	chr6	53338201	53338700	+	0	NA	promoter-TSS (NR_046241)	promoter-TSS (NR_046241)	-833	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
5609	chr1	26110771	26112530	+	0	NA	promoter-TSS (NM_001243533)	promoter-TSS (NM_001243533)	-174	NM_001243533	149420		NM_152835	ENSG00000175087	PDIK1L	CLIK1L|STK35L2	PDLIM1 interacting kinase 1 like	protein-coding
57005	chr12	120577671	120577830	+	0	NA	TTS (NM_014868)	TTS (NM_014868)	3648	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
136565	chr2	177620301	177620750	+	0	NA	Intergenic	Intergenic	-1783	NM_152275	92104		NM_152275	ENSG00000197557	IFT70A	CFAP259|FAP259|TTC30A|TTC30B	intraflagellar transport 70A	protein-coding
80880	chr16	3625921	3627100	+	0	NA	Intergenic	L1MD|LINE|L1	-14904	NM_032444	84464		NM_032444	ENSG00000188827	SLX4	BTBD12|FANCP|MUS312	SLX4 structure-specific endonuclease subunit	protein-coding
189372	chr5	172695701	172696500	+	0	NA	Intergenic	Intergenic	33935	NR_049799	100847029		NR_049799	ENSG00000265160	MIR5003	-	microRNA 5003	ncRNA
56142	chr12	111321901	111322380	+	0	NA	intron (NM_015267, intron 17 of 21)	AluSz6|SINE|Alu	17998	NR_106818	102465455		NR_106818	ENSG00000273700	MIR6760	hsa-mir-6760	microRNA 6760	ncRNA
1723	chr1	5713071	5714000	+	0	NA	Intergenic	Intergenic	149206	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
109889	chr19	1264071	1264230	+	0	NA	Intergenic	AluJo|SINE|Alu	-5118	NM_001280	1153		NM_001280	ENSG00000099622	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding
182709	chr5	68237721	68238430	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	22319	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
90658	chr17	1681751	1682050	+	0	NA	exon (NM_006445, exon 5 of 43)	exon (NM_006445, exon 5 of 43)	2967	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
99547	chr17	50374301	50374500	+	0	NA	intron (NM_152463, intron 1 of 8)	AluJb|SINE|Alu	1171	NM_152463	146956		NM_152463	ENSG00000154920	EME1	MMS4L|SLX2A	essential meiotic structure-specific endonuclease 1	protein-coding
51230	chr12	50768921	50769180	+	0	NA	intron (NM_005171, intron 1 of 6)	MER41-int|LTR|ERV1	4949	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
155486	chr22	38503851	38504300	+	0	NA	intron (NM_006386, intron 1 of 12)	L1ME3E|LINE|L1	2236	NM_006386	10521		NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding
74573	chr15	60544821	60545480	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	47376	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
181166	chr5	39057621	39058350	+	0	NA	intron (NM_001285439, intron 2 of 38)	intron (NM_001285439, intron 2 of 38)	16414	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
126882	chr2	32164101	32164630	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1476	NM_001193515	55676		NM_017964	ENSG00000152683	SLC30A6	MST103|MSTP103|ZNT6	solute carrier family 30 member 6	protein-coding
102399	chr17	75591901	75592100	+	0	NA	exon (NM_001309242, exon 6 of 63)	exon (NM_001309242, exon 6 of 63)	3942	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
232397	chr9	135989821	135991580	+	0	NA	Intergenic	Intergenic	-29327	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
150505	chr21	42836021	42836300	+	0	NA	Intergenic	L1MC4a|LINE|L1	43115	NM_001260477	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
81413	chr16	8660831	8661180	+	0	NA	Intergenic	Intergenic	-13612	NM_020686	18		NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
39682	chr11	61717821	61718150	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	-34651	NM_001127392	745		NM_013279	ENSG00000124920	MYRF	11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding
172374	chr4	1755651	1756330	+	0	NA	Intergenic	Intergenic	34469	NM_006342	10460		NM_006342	ENSG00000013810	TACC3	ERIC-1|ERIC1|Tacc4|maskin	transforming acidic coiled-coil containing protein 3	protein-coding
32165	chr10	101536871	101537100	+	0	NA	intron (NM_033637, intron 12 of 14)	intron (NM_033637, intron 12 of 14)	51272	NM_001174084	27343		NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding
227679	chr9	92992551	92993180	+	0	NA	intron (NM_001369951, intron 3 of 17)	L1MA5A|LINE|L1	18396	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
219005	chr8	63181701	63182300	+	0	NA	intron (NR_102434, intron 3 of 3)	intron (NR_102434, intron 3 of 3)	12997	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
58129	chr12	124899451	124899900	+	0	NA	Intergenic	AluSg|SINE|Alu	14975	NM_021009	7316		NM_021009	ENSG00000150991	UBC	HMG20	ubiquitin C	protein-coding
94210	chr17	28602251	28602350	+	0	NA	intron (NR_040012, intron 2 of 2)	AluJr4|SINE|Alu	3167	NR_040012	100506436		NR_040012		SPAG5-AS1	-	SPAG5 antisense RNA 1	ncRNA
203412	chr7	193701	194380	+	0	NA	intron (NM_020223, intron 1 of 9)	intron (NM_020223, intron 1 of 9)	1469	NM_020223	56975		NM_020223	ENSG00000177706	FAM20C	DMP-4|DMP4|G-CK|GEF-CK|RNS	FAM20C golgi associated secretory pathway kinase	protein-coding
70766	chr14	103445321	103445580	+	0	NA	intron (NM_002376, intron 3 of 15)	intron (NM_002376, intron 3 of 15)	60035	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
69869	chr14	99276551	99277300	+	0	NA	Intergenic	Intergenic	-4728	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
21395	chr1	205276371	205276730	+	0	NA	Intergenic	Intergenic	19353	NM_001331034	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
237342	chrX	118530421	118530800	+	0	NA	intron (NM_144658, intron 1 of 52)	L2c|LINE|L2	34701	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
136472	chr2	177209801	177210700	+	0	NA	Intergenic	AluSx1|SINE|Alu	2161	NR_157853	105373759		NR_157853		LOC105373759	-	uncharacterized LOC105373759	ncRNA
71068	chr14	104828651	104829030	+	0	NA	Intergenic	FRAM|SINE|Alu	7639	NR_024396	196872		NM_152646	ENSG00000258701	VESTAR	LINC00638	VEGFC mRNA stability associated lncRNA	ncRNA
213858	chr7	142301801	142302000	+	0	NA	Intergenic	Intergenic	-29651	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
195228	chr6	36195421	36196700	+	0	NA	promoter-TSS (NM_015695)	promoter-TSS (NM_015695)	-684	NM_015695	27154		NM_015695	ENSG00000096070	BRPF3	-	bromodomain and PHD finger containing 3	protein-coding
140889	chr2	237662071	237662230	+	0	NA	intron (NM_001137550, intron 1 of 23)	MLT1C|LTR|ERVL-MaLR	-30014	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
76502	chr15	74939271	74939900	+	0	NA	Intergenic	Intergenic	-1512	NM_004255	9377		NM_004255	ENSG00000178741	COX5A	COX|COX-VA|MC4DN20|VA	cytochrome c oxidase subunit 5A	protein-coding
105336	chr17	82604051	82604950	+	0	NA	3' UTR (NM_004514, exon 9 of 9)	3' UTR (NM_004514, exon 9 of 9)	43944	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
106864	chr18	24115751	24116200	+	0	NA	intron (NM_001135993, intron 7 of 13)	MIR3|SINE|MIR	2648	NM_001292030	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
144387	chr20	35174851	35175180	+	0	NA	intron (NM_006404, intron 2 of 3)	CpG-17665	2943	NM_006404	10544		NM_006404	ENSG00000101000	PROCR	CCCA|CCD41|EPCR	protein C receptor	protein-coding
116098	chr19	17283901	17284300	+	0	NA	exon (NM_152363, exon 6 of 9)	exon (NM_152363, exon 6 of 9)	2199	NM_001278444	126549		NM_152363	ENSG00000160117	ANKLE1	ANKRD41|LEM3|LEMD6	ankyrin repeat and LEM domain containing 1	protein-coding
156018	chr22	39948301	39948700	+	0	NA	intron (NM_001291826, intron 2 of 6)	intron (NM_001291826, intron 2 of 6)	1683	NM_001291825	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
32190	chr10	101693551	101694600	+	0	NA	intron (NM_001323541, intron 1 of 8)	intron (NM_001323541, intron 1 of 8)	1095	NM_022039	6468		NM_022039	ENSG00000107829	FBXW4	DAC|FBW4|FBWD4|SHFM3|SHSF3	F-box and WD repeat domain containing 4	protein-coding
120071	chr19	42079771	42080300	+	0	NA	exon (NM_001330519, exon 2 of 2)	exon (NM_001330519, exon 2 of 2)	3869	NM_022752	64763		NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding
229477	chr9	122122421	122123310	+	0	NA	Intergenic	Intergenic	-2698	NR_039690	100616312		NR_039690	ENSG00000266583	MIR4478	mir-4478	microRNA 4478	ncRNA
21360	chr1	204975521	204976050	+	0	NA	intron (NM_001378330, intron 15 of 15)	intron (NM_001378330, intron 15 of 15)	31559	NM_001160331	23114		NM_015090	ENSG00000163531	NFASC	NEDCPMD|NF|NRCAML	neurofascin	protein-coding
11537	chr1	91006021	91006530	+	0	NA	intron (NM_032186, intron 1 of 3)	FRAM|SINE|Alu	15233	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
184552	chr5	102759021	102759480	+	0	NA	intron (NM_001364588, intron 1 of 24)	L2b|LINE|L2	3945	NM_001364587	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
3328	chr1	15422571	15422730	+	0	NA	intron (NM_024329, intron 1 of 3)	AluY|SINE|Alu	12762	NM_024329	79180		NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding
183062	chr5	73503671	73504030	+	0	NA	intron (NM_001037637, intron 4 of 5)	intron (NM_001037637, intron 4 of 5)	5425	NM_001207	689		NM_001207	ENSG00000145741	BTF3	BETA-NAC|BTF3a|BTF3b|NACB	basic transcription factor 3	protein-coding
53160	chr12	57937751	57937850	+	0	NA	Intergenic	Intergenic	-1636	NR_038269	100506844		NR_038269	ENSG00000257698	GIHCG	-	GIHCG inhibitor of miR-200b/200a/429 expression	ncRNA
182631	chr5	66952201	66952430	+	0	NA	intron (NM_015183, intron 3 of 27)	L2c|LINE|L2	-6758	NM_001290226	375449		NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding
150164	chr21	38985671	38985900	+	0	NA	Intergenic	Intergenic	-8011	NR_109962	101928435		NR_109962	ENSG00000232837	LINC01700	-	long intergenic non-protein coding RNA 1700	ncRNA
92827	chr17	16199121	16199780	+	0	NA	intron (NM_006311, intron 1 of 45)	intron (NM_006311, intron 1 of 45)	-4811	NM_001190438	9611		NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding
10954	chr1	84174221	84174550	+	0	NA	intron (NM_001300915, intron 2 of 11)	L2c|LINE|L2	-7247	NM_001242862	5567		NM_002731	ENSG00000142875	PRKACB	CAFD2|PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding
53408	chr12	64732501	64732700	+	0	NA	intron (NM_002076, intron 9 of 13)	AluY|SINE|Alu	26806	NM_002076	2799		NM_002076	ENSG00000135677	GNS	G6S	glucosamine (N-acetyl)-6-sulfatase	protein-coding
153232	chr22	23971851	23972250	+	0	NA	3' UTR (NM_001084393, exon 3 of 3)	3' UTR (NM_001084393, exon 3 of 3)	2391	NM_001084392	1652		NM_001355	ENSG00000099977	DDT	D-DT|DDCT|MIF-2|MIF2	D-dopachrome tautomerase	protein-coding
211697	chr7	106736601	106737200	+	0	NA	Intergenic	Intergenic	-75742	NM_175884	168455		NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71 like	protein-coding
28184	chr10	44310321	44311420	+	0	NA	Intergenic	CpG	18120	NR_164139	100130539		NM_001258000	ENSG00000277288	LINC02881	C10orf142	long intergenic non-protein coding RNA 2881	ncRNA
194644	chr6	33590951	33591530	+	0	NA	intron (NR_027908, intron 1 of 1)	MER91A|DNA|hAT-Tip100	2098	NR_027908	401253		NM_207497	ENSG00000197251	LINC00336	C6orf227|NCRNA00336	long intergenic non-protein coding RNA 336	ncRNA
154752	chr22	36504621	36504880	+	0	NA	exon (NM_001102371, exon 3 of 9)	exon (NM_001102371, exon 3 of 9)	2290	NM_001363041	80020		NM_024955	ENSG00000100350	FOXRED2	ERFAD	FAD dependent oxidoreductase domain containing 2	protein-coding
142885	chr20	17898001	17898810	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	64541	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
144014	chr20	33400721	33402130	+	0	NA	promoter-TSS (NM_016408)	promoter-TSS (NM_016408)	94	NM_016408	51654		NM_016082	ENSG00000101391	CDK5RAP1	C20orf34|C42|CGI-05|HSPC167	CDK5 regulatory subunit associated protein 1	protein-coding
110638	chr19	2228751	2229050	+	0	NA	intron (NM_032482, intron 27 of 27)	intron (NM_032482, intron 27 of 27)	5249	NR_031596	100302283		NR_031596	ENSG00000221411	MIR1227	MIRN1227|hsa-mir-1227|mir-1227	microRNA 1227	ncRNA
148954	chr21	10589251	10589350	+	0	NA	intron (NM_199261, intron 17 of 23)	L1PA16|LINE|L1	67717	NM_199259	7179		NM_199259	ENSG00000274391	TPTE	CT44|PTEN2|TPTE1	transmembrane phosphatase with tensin homology	protein-coding
204594	chr7	5302321	5302580	+	0	NA	intron (NM_153247, intron 10 of 10)	AluJr|SINE|Alu	19507	NM_153247	222962		NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding
53195	chr12	62210401	62210600	+	0	NA	Intergenic	Intergenic	-17661	NM_178539	338811		NM_178539	ENSG00000198673	TAFA2	FAM19A2|TAFA-2	TAFA chemokine like family member 2	protein-coding
171721	chr3	197934671	197934830	+	0	NA	intron (NM_032263, intron 5 of 11)	AluJr|SINE|Alu	15175	NM_001323030	84223		NM_032263	ENSG00000114473	IQCG	CFAP122|DRC9	IQ motif containing G	protein-coding
237193	chrX	107774921	107775180	+	0	NA	intron (NM_198057, intron 1 of 2)	intron (NM_198057, intron 1 of 2)	737	NM_198057	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
116066	chr19	17230401	17230600	+	0	NA	Intergenic	AluSx1|SINE|Alu	4274	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
61472	chr13	52343371	52343750	+	0	NA	Intergenic	Intergenic	9265	NR_120400	103191607		NR_120400	ENSG00000271564	LINC02333	-	long intergenic non-protein coding RNA 2333	ncRNA
5632	chr1	26177301	26177580	+	0	NA	promoter-TSS (NM_001297648)	promoter-TSS (NM_001297648)	-51	NM_001297647	10256		NM_006314	ENSG00000142675	CNKSR1	CNK|CNK1	connector enhancer of kinase suppressor of Ras 1	protein-coding
149395	chr21	31158101	31158330	+	0	NA	intron (NM_001353694, intron 16 of 27)	intron (NM_001353694, intron 16 of 27)	2725	NM_001353684	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
196855	chr6	47656171	47656330	+	0	NA	promoter-TSS (NM_001368115)	promoter-TSS (NM_001368115)	-222	NM_153839	222611		NM_153839		ADGRF2	GPR111|PGR20|hGPCR35	adhesion G protein-coupled receptor F2	ncRNA
115801	chr19	16386351	16387030	+	0	NA	intron (NM_021235, intron 19 of 22)	L1MEf|LINE|L1	61864	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
125854	chr2	24490421	24492900	+	0	NA	promoter-TSS (NM_001362955)	promoter-TSS (NM_001362955)	-217	NM_001362954	8648		NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
29969	chr10	73643821	73644680	+	0	NA	TTS (NM_024875)	TTS (NM_024875)	-2776	NM_021245	58529		NM_021245	ENSG00000177791	MYOZ1	CS-2|FATZ|MYOZ	myozenin 1	protein-coding
148604	chr21	5123321	5124130	+	0	NA	intron (NR_135220, intron 3 of 5)	intron (NR_135220, intron 3 of 5)	4644	NM_001363761	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
136104	chr2	173922551	173923080	+	0	NA	intron (NM_001172712, intron 4 of 6)	L2a|LINE|L2	41065	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
115665	chr19	16140951	16141480	+	0	NA	intron (NR_163150, intron 1 of 7)	intron (NR_163150, intron 1 of 7)	-2470	NM_001369809	84941		NM_032855	ENSG00000196684	HSH2D	ALX|HSH2	hematopoietic SH2 domain containing	protein-coding
218799	chr8	59027001	59027400	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	91947	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
12878	chr1	110211001	110212980	+	0	NA	exon (NM_004978, exon 1 of 4)	exon (NM_004978, exon 1 of 4)	1676	NM_001377331	3749		NM_004978	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	potassium voltage-gated channel subfamily C member 4	protein-coding
234895	chrX	30865101	30865300	+	0	NA	intron (NM_152787, intron 4 of 10)	MER20B|DNA|hAT-Charlie	24054	NM_152787	257397		NM_152787	ENSG00000157625	TAB3	MAP3K7IP3|NAP1	TGF-beta activated kinase 1 (MAP3K7) binding protein 3	protein-coding
128428	chr2	55415051	55415150	+	0	NA	intron (NM_018084, intron 2 of 31)	intron (NM_018084, intron 2 of 31)	4756	NM_018084	55704		NM_018084	ENSG00000115355	CCDC88A	APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL	coiled-coil domain containing 88A	protein-coding
121625	chr19	47436371	47437250	+	0	NA	intron (NM_015063, intron 8 of 9)	intron (NM_015063, intron 8 of 9)	-14577	NM_001346148	56917		NM_020160	ENSG00000105419	MEIS3	MRG2	Meis homeobox 3	protein-coding
59388	chr13	24931901	24932180	+	0	NA	non-coding (NR_026730, exon 5 of 5)	non-coding (NR_026730, exon 5 of 5)	-9179	NR_047595	55835		NM_018451	ENSG00000151849	CENPJ	BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4	centromere protein J	protein-coding
194743	chr6	33863551	33863650	+	0	NA	Intergenic	Intergenic	33307	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
14054	chr1	120772721	120773350	+	0	NA	intron (NR_157049, intron 2 of 4)	intron (NR_157049, intron 2 of 4)	-32521	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
97064	chr17	42376651	42376950	+	0	NA	intron (NM_001369516, intron 1 of 23)	AluY|SINE|Alu	11642	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
175963	chr4	81405801	81406380	+	0	NA	Intergenic	Intergenic	65817	NM_152545	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
137943	chr2	201123751	201124590	+	0	NA	intron (NR_147255, intron 1 of 4)	L4_C_Mam|LINE|RTE-X	-4795	NM_001308042	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
84666	chr16	30750671	30750830	+	0	NA	intron (NM_000294, intron 2 of 9)	intron (NM_000294, intron 2 of 9)	2325	NM_000294	5261		NM_000294	ENSG00000156873	PHKG2	GSD9C	phosphorylase kinase catalytic subunit gamma 2	protein-coding
83816	chr16	28836251	28837050	+	0	NA	3' UTR (NM_007245, exon 22 of 22)	3' UTR (NM_007245, exon 22 of 22)	7357	NR_039872	100616256		NR_039872	ENSG00000283845	MIR4721	-	microRNA 4721	ncRNA
180705	chr5	22214101	22214350	+	0	NA	promoter-TSS (NM_001317228)	promoter-TSS (NM_001317228)	-375	NM_001364107	1010		NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
148703	chr21	6438371	6438550	+	0	NA	Intergenic	L1MB3|LINE|L1	21622	NM_001321072	875		NM_000071	ENSG00000160200	CBS	CBSL|HIP4	cystathionine beta-synthase	protein-coding
96117	chr17	39642921	39643180	+	0	NA	intron (NM_001165938, intron 1 of 13)	L2a|LINE|L2	5906	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
50251	chr12	46251871	46252430	+	0	NA	intron (NM_001077484, intron 1 of 16)	L1PA6|LINE|L1	14366	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
181198	chr5	39151871	39152230	+	0	NA	intron (NM_199335, intron 3 of 17)	intron (NM_199335, intron 3 of 17)	67513	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
196961	chr6	52983301	52983500	+	0	NA	intron (NM_001512, intron 5 of 6)	intron (NM_001512, intron 5 of 6)	11884	NM_001512	2941		NM_001512	ENSG00000170899	GSTA4	GSTA4-4|GTA4	glutathione S-transferase alpha 4	protein-coding
93973	chr17	21764521	21764850	+	0	NA	Intergenic	Intergenic	72162	NM_001194958	100134444		NM_001194958	ENSG00000260458	KCNJ18	KIR2.6|TTPP2	potassium inwardly rectifying channel subfamily J member 18	protein-coding
14542	chr1	144875901	144876850	+	0	NA	intron (NR_104189, intron 2 of 3).2	intron (NR_104189, intron 2 of 3).2	158204	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
12171	chr1	100356551	100356950	+	0	NA	intron (NM_001319210, intron 2 of 16)	AluSg|SINE|Alu	4244	NM_003672	8556		NM_003672	ENSG00000079335	CDC14A	DFNB105|DFNB32|DFNB35|cdc14|hCDC14	cell division cycle 14A	protein-coding
145788	chr20	45377971	45378380	+	0	NA	intron (NM_014477, intron 1 of 4)	intron (NM_014477, intron 1 of 4)	150	NM_014477	27296		NM_014477	ENSG00000124251	TP53TG5	C20orf10|CLG01	TP53 target 5	protein-coding
102093	chr17	74973801	74974250	+	0	NA	intron (NR_110878, intron 1 of 2)	intron (NR_110878, intron 1 of 2)	-1266	NM_030630	283987		NM_030630	ENSG00000167861	HID1	17orf28|C17orf28|DEE105|DMC1|HID-1	HID1 domain containing	protein-coding
239506	chrY	56766201	56766780	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-187765	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
95344	chr17	35794901	35795840	+	0	NA	exon (NM_024302, exon 1 of 8).2	exon (NM_024302, exon 1 of 8).2	271	NM_024302	79148		NM_024302	ENSG00000271447	MMP28	EPILYSIN|MM28|MMP-25|MMP-28|MMP25	matrix metallopeptidase 28	protein-coding
59512	chr13	27006621	27006880	+	0	NA	Intergenic	Intergenic	-118783	NR_046547	100874070		NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA
152509	chr22	20952551	20952730	+	0	NA	3' UTR (NM_005207, exon 3 of 3)	3' UTR (NM_005207, exon 3 of 3)	-4452	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
100395	chr17	60305121	60305480	+	0	NA	intron (NM_032582, intron 2 of 33)	MSTB|LTR|ERVL-MaLR	-73655	NR_002999	677681		NR_002999	ENSG00000252577	SCARNA20	ACA66	small Cajal body-specific RNA 20	ncRNA
58097	chr12	124734301	124734500	+	0	NA	Intergenic	Intergenic	105271	NM_001367982	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
33203	chr10	113853771	113854300	+	0	NA	promoter-TSS (NM_198514)	promoter-TSS (NM_198514)	47	NM_014881	9937		NM_014881	ENSG00000198924	DCLRE1A	PSO2|SNM1|SNM1A	DNA cross-link repair 1A	protein-coding
124046	chr19	55537071	55537230	+	0	NA	promoter-TSS (NM_001370096)	promoter-TSS (NM_001370096)	-17	NM_001370096	646643		NM_001101401	ENSG00000187550	SBK2	SGK069	SH3 domain binding kinase family member 2	protein-coding
208975	chr7	74202921	74203600	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6746	NM_032464	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
23066	chr1	226635351	226635950	+	0	NA	intron (NM_002221, intron 7 of 7)	intron (NM_002221, intron 7 of 7)	39418	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
227697	chr9	93020071	93020330	+	0	NA	intron (NM_001369951, intron 12 of 17)	intron (NM_001369951, intron 12 of 17)	-5256	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
179813	chr5	444751	445050	+	0	NA	intron (NM_007277, intron 1 of 12)	L1ME4a|LINE|L1	1724	NM_007277	11336		NM_007277	ENSG00000180104	EXOC3	SEC6|SEC6L1|Sec6p	exocyst complex component 3	protein-coding
115350	chr19	15201701	15202080	+	0	NA	promoter-TSS (NM_000435)	promoter-TSS (NM_000435)	-895	NM_000435	4854		NM_000435	ENSG00000074181	NOTCH3	CADASIL|CADASIL1|CASIL|IMF2|LMNS	notch receptor 3	protein-coding
197296	chr6	71349451	71349550	+	0	NA	Intergenic	Intergenic	27531	NR_029598	407032		NR_029598	ENSG00000199094	MIR30C2	MIRN30C2|mir-30c-2	microRNA 30c-2	ncRNA
154556	chr22	36225401	36225800	+	0	NA	TTS (NM_030882)	TTS (NM_030882)	13927	NM_030882	23780		NM_030882	ENSG00000128335	APOL2	APOL-II|APOL3	apolipoprotein L2	protein-coding
125030	chr2	9593071	9593230	+	0	NA	intron (NM_006826, intron 2 of 5)	intron (NM_006826, intron 2 of 5)	-37320	NM_001382778	6868		NM_003183	ENSG00000151694	ADAM17	ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE	ADAM metallopeptidase domain 17	protein-coding
162794	chr3	49101051	49101350	+	0	NA	intron (NM_001272073, intron 10 of 23)	intron (NM_001272073, intron 10 of 23)	-1286	NR_106950	102465536		NR_106950	ENSG00000284488	MIR6890	hsa-mir-6890	microRNA 6890	ncRNA
206492	chr7	33076601	33077150	+	0	NA	Intergenic	AluJb|SINE|Alu	-14099	NM_001374339	51251		NM_016489	ENSG00000122643	NT5C3A	NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36	5'-nucleotidase, cytosolic IIIA	protein-coding
191487	chr6	11212551	11212850	+	0	NA	intron (NM_182966, intron 2 of 2)	intron (NM_182966, intron 2 of 2)	19968	NM_006403	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
163545	chr3	51680301	51680700	+	0	NA	intron (NM_001243727, intron 2 of 3)	intron (NM_001243727, intron 2 of 3)	8873	NR_103463	51368		NM_015926	ENSG00000164081	TEX264	ZSIG11	testis expressed 264, ER-phagy receptor	protein-coding
25695	chr10	8897691	8898140	+	0	NA	promoter-TSS (NR_131944)	promoter-TSS (NR_131944)	-74	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
109253	chr19	522921	523480	+	0	NA	Intergenic	CpG	-8560	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
77648	chr15	85498451	85498950	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	118097	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
153098	chr22	23501701	23502100	+	0	NA	Intergenic	(TCCACCC)n|Simple_repeat|Simple_repeat	-14920	NR_165489	388882		NR_110539	ENSG00000178248	FAM230I	LINC01658	family with sequence similarity 230 member I	ncRNA
113018	chr19	7924021	7924480	+	0	NA	TTS (NR_030717)	TTS (NR_030717)	1885	NM_206833	404217		NM_206833	ENSG00000178531	CTXN1	CTXN	cortexin 1	protein-coding
213970	chr7	142793751	142794550	+	0	NA	intron (NM_001130026, intron 10 of 10)	L2c|LINE|L2	23180	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
225387	chr9	35038121	35038380	+	0	NA	Intergenic	AluJb|SINE|Alu	-2845	NM_001040411	138724		NM_203299	ENSG00000174038	SPATA31G1	C9orf131	SPATA31 subfamily G member 1	protein-coding
119728	chr19	41222551	41222900	+	0	NA	intron (NM_021913, intron 4 of 19)	AluY|SINE|Alu	3502	NM_021913	558		NM_001699	ENSG00000167601	AXL	ARK|AXL3|JTK11|Tyro7|UFO	AXL receptor tyrosine kinase	protein-coding
229499	chr9	122226851	122226950	+	0	NA	exon (NM_001242333, exon 3 of 9)	exon (NM_001242333, exon 3 of 9)	641	NM_001242334	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
198417	chr6	106080351	106080650	+	0	NA	Intergenic	Intergenic	-5836	NM_001198	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
25660	chr10	8349971	8350730	+	0	NA	Intergenic	Intergenic	-82045	NR_108058	100507143		NR_108058	ENSG00000232170	LINC00708	GS1-756B1.2	long intergenic non-protein coding RNA 708	ncRNA
11948	chr1	93855901	93856330	+	0	NA	Intergenic	L1PA4|LINE|L1	-8896	NM_001261408	8412		NM_003567	ENSG00000137936	BCAR3	AND-34|MIG7|NSP2|SH2D3B	BCAR3 adaptor protein, NSP family member	protein-coding
131741	chr2	98449771	98450230	+	0	NA	intron (NM_001351429, intron 1 of 23)	L1ME3G|LINE|L1	3990	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
44345	chr11	102424521	102425280	+	0	NA	intron (NM_052932, intron 2 of 4)	intron (NM_052932, intron 2 of 4)	27865	NM_052932	114908		NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
151162	chr21	44933771	44934000	+	0	NA	TTS (NR_027129)	TTS (NR_027129)	-5070	NM_001127491	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
69177	chr14	92646471	92647180	+	0	NA	intron (NM_024832, intron 5 of 9)	intron (NM_024832, intron 5 of 9)	70591	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
65086	chr14	39491051	39491350	+	0	NA	Intergenic	Intergenic	-58700	NM_203301	254170		NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
126707	chr2	30167051	30168030	+	0	NA	Intergenic	MIRb|SINE|MIR	-19894	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
177923	chr4	131737351	131737550	+	0	NA	Intergenic	SST1|Satellite|centr	-27388	NR_125883	101927305		NR_125883	ENSG00000251676	SNHG27	-	small nucleolar RNA host gene 27	ncRNA
185482	chr5	131295951	131296780	+	0	NA	intron (NM_001038702, intron 1 of 4)	MLT1C|LTR|ERVL-MaLR	32312	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
93062	chr17	17493521	17494230	+	0	NA	TTS (NM_018019)	TTS (NM_018019)	2520	NM_016084	51655		NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding
162693	chr3	48952451	48953000	+	0	NA	intron (NM_001349226, intron 3 of 15)	intron (NM_001349226, intron 3 of 15)	-33340	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
48409	chr12	9664451	9664950	+	0	NA	Intergenic	MIRb|SINE|MIR	-5013	NM_001197318	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
161410	chr3	41241801	41242500	+	0	NA	Intergenic	Intergenic	42645	NM_001098210	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
99938	chr17	57254251	57254750	+	0	NA	Intergenic	Intergenic	-1351	NM_001322250	124540		NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding
117625	chr19	23286221	23286880	+	0	NA	Intergenic	Intergenic	-12299	NR_103741	100132815		NR_103741		IPO5P1	-	importin 5 pseudogene 1	pseudo
188255	chr5	151075721	151076680	+	0	NA	intron (NM_001252390, intron 1 of 17)	intron (NM_001252390, intron 1 of 17)	4834	NM_001252386	10318		NM_006058	ENSG00000145901	TNIP1	ABIN-1|NAF1|VAN|nip40-1	TNFAIP3 interacting protein 1	protein-coding
176867	chr4	102619201	102619500	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-116864	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
198591	chr6	107699521	107700230	+	0	NA	Intergenic	Intergenic	32275	NM_001286409	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
159376	chr3	13350571	13350900	+	0	NA	intron (NM_024923, intron 20 of 39)	AluY|SINE|Alu	-67478	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
140253	chr2	232142171	232142330	+	0	NA	intron (NM_001257281, intron 8 of 13)	intron (NM_001257281, intron 8 of 13)	-30403	NR_030288	693147		NR_030288	ENSG00000207626	MIR562	MIRN562|hsa-mir-562	microRNA 562	ncRNA
65273	chr14	49997851	49998230	+	0	NA	intron (NR_126498, intron 1 of 3)	intron (NR_126498, intron 1 of 3)	-4906	NR_126499	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
59716	chr13	29785971	29786130	+	0	NA	intron (NM_007106, intron 1 of 4)	MIRb|SINE|MIR	64567	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
79186	chr16	319501	319700	+	0	NA	intron (NM_181050, intron 2 of 9)	intron (NM_181050, intron 2 of 9)	33123	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
75077	chr15	64379601	64379800	+	0	NA	intron (NR_109934, intron 2 of 3)	intron (NR_109934, intron 2 of 3)	1741	NM_001029989	9768		NM_014736	ENSG00000166803	PCLAF	KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF	PCNA clamp associated factor	protein-coding
222642	chr8	141131771	141132330	+	0	NA	intron (NM_014957, intron 1 of 22)	intron (NM_014957, intron 1 of 22)	3461	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
208641	chr7	73002571	73002980	+	0	NA	intron (NR_040582, intron 3 of 8)	AluSx|SINE|Alu	3168	NR_040582	442578		NM_001013739		STAG3L3	STAG3L1|STAG3L2|STAG3L3P	STAG3 cohesin complex component like 3 (pseudogene)	pseudo
99289	chr17	49779521	49780080	+	0	NA	Intergenic	Intergenic	-8881	NM_001199158	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
226135	chr9	63385151	63385730	+	0	NA	Intergenic	TAR1|Satellite|telo	50902	NR_160668	100996643		NR_160664		LOC100996643	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
62515	chr13	99500671	99502170	+	0	NA	promoter-TSS (NM_004800)	promoter-TSS (NM_004800)	-52	NM_004800	9375		NM_004800	ENSG00000125304	TM9SF2	Lnc-PCIR|P76	transmembrane 9 superfamily member 2	protein-coding
168480	chr3	143172701	143172900	+	0	NA	Intergenic	L2c|LINE|L2	53029	NM_004267	9435		NM_004267	ENSG00000175040	CHST2	C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1	carbohydrate sulfotransferase 2	protein-coding
4370	chr1	20720951	20722050	+	0	NA	3' UTR (NM_001103161, exon 10 of 10)	3' UTR (NM_001103161, exon 10 of 10)	-3493	NM_001122819	57576		NM_020816	ENSG00000117245	KIF17	KIF17B|KIF3X|KLP-2|OSM-3	kinesin family member 17	protein-coding
19353	chr1	173853821	173854080	+	0	NA	intron (NM_018122, intron 15 of 16)	intron (NM_018122, intron 15 of 16)	-9298	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
15779	chr1	151192871	151193030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2753	NM_005997	6944		NM_005997	ENSG00000163159	VPS72	CFL1|Swc2|TCFL1|YL-1|YL1	vacuolar protein sorting 72 homolog	protein-coding
11771	chr1	92463421	92464000	+	0	NA	Intergenic	Intergenic	20244	NM_001127215	2672		NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding
63680	chr14	21076401	21076800	+	0	NA	exon (NM_018071, exon 7 of 24)	exon (NM_018071, exon 7 of 24)	-5728	NM_001282211	57447		NM_016250	ENSG00000165795	NDRG2	SYLD	NDRG family member 2	protein-coding
102377	chr17	75558851	75558950	+	0	NA	intron (NM_004524, intron 5 of 24)	CpG	-29158	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
14746	chr1	145998001	145998750	+	0	NA	Intergenic	Intergenic	-1796	NM_006472	10628		NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding
232379	chr9	135958601	135959400	+	0	NA	intron (NM_016172, intron 1 of 9)	intron (NM_016172, intron 1 of 9)	2373	NM_016172	10422		NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding
85724	chr16	56637951	56638800	+	0	NA	promoter-TSS (NM_005946)	promoter-TSS (NM_005946)	-291	NM_005946	4489		NM_005946	ENSG00000205362	MT1A	MT-1A|MT-IA|MT1|MT1S|MTC	metallothionein 1A	protein-coding
78057	chr15	90098711	90099480	+	0	NA	intron (NM_002168, intron 1 of 10)	L2a|LINE|L2	1526	NM_001289910	3418		NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDH-2|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2	protein-coding
104875	chr17	81865401	81866230	+	0	NA	Intergenic	Intergenic	5182	NM_001185077	396		NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding
68253	chr14	77023001	77023500	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	5458	NM_024496	64207		NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1|NEDAMSS	interferon regulatory factor 2 binding protein like	protein-coding
66397	chr14	61499271	61499850	+	0	NA	intron (NM_006255, intron 10 of 13)	intron (NM_006255, intron 10 of 13)	70634	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
86481	chr16	66984901	66985950	+	0	NA	Intergenic	Intergenic	-3164	NM_173815	283848		NM_173815	ENSG00000172824	CES4A	CES6|CES8	carboxylesterase 4A	protein-coding
104340	chr17	80970001	80971050	+	0	NA	intron (NR_148968, intron 1 of 1)	intron (NR_148968, intron 1 of 1)	688	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
218777	chr8	58981921	58982580	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	136897	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
36849	chr11	10307201	10308500	+	0	NA	promoter-TSS (NR_103765)	promoter-TSS (NR_103765)	-463	NR_103765	100130460		NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA
18759	chr1	167499121	167500000	+	0	NA	intron (NM_001378515, intron 1 of 8)	intron (NM_001378515, intron 1 of 8)	18969	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
70291	chr14	101766001	101766400	+	0	NA	intron (NM_001352915, intron 2 of 14)	intron (NM_001352915, intron 2 of 14)	3830	NM_001352915	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
43128	chr11	75261021	75262180	+	0	NA	3' UTR (NM_004041, exon 16 of 16)	3' UTR (NM_004041, exon 16 of 16)	20826	NM_001195528	100507050		NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein like	protein-coding
139354	chr2	219640471	219640630	+	0	NA	exon (NM_201574, exon 21 of 23)	exon (NM_201574, exon 21 of 23)	12920	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
232073	chr9	133485671	133486650	+	0	NA	Intergenic	Intergenic	-7061	NM_001145099	11182		NM_017585	ENSG00000160326	SLC2A6	GLUT6|GLUT9|HSA011372	solute carrier family 2 member 6	protein-coding
60616	chr13	42176451	42176550	+	0	NA	intron (NR_123715, intron 12 of 31)	intron (NR_123715, intron 12 of 31)	38442	NR_123714	160851		NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding
91644	chr17	5438751	5440050	+	0	NA	promoter-TSS (NM_001212)	promoter-TSS (NM_001212)	-245	NM_001212	708		NM_001212	ENSG00000108561	C1QBP	COXPD33|GC1QBP|HABP1|SF2AP32|SF2p32|gC1Q-R|gC1qR|p32	complement C1q binding protein	protein-coding
87071	chr16	68372151	68372250	+	0	NA	5' UTR (NM_018667, exon 3 of 9)	5' UTR (NM_018667, exon 3 of 9)	61086	NM_001290018	54496		NM_019023	ENSG00000132600	PRMT7	SBIDDS	protein arginine methyltransferase 7	protein-coding
166335	chr3	112932501	112932700	+	0	NA	intron (NM_170780, intron 1 of 6)	L1MA5A|LINE|L1	42503	NM_138940	131450		NM_138806	ENSG00000163606	CD200R1	CD200R|HCRTR2|MOX2R|OX2R	CD200 receptor 1	protein-coding
195110	chr6	35622401	35623000	+	0	NA	intron (NM_001145775, intron 4 of 11)	intron (NM_001145775, intron 4 of 11)	42089	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
125217	chr2	10316601	10316800	+	0	NA	intron (NM_134421, intron 1 of 5)	intron (NM_134421, intron 1 of 5)	13000	NM_134421	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
230840	chr9	129086501	129086700	+	0	NA	intron (NM_020438, intron 6 of 7)	intron (NM_020438, intron 6 of 7)	5489	NR_072983	57171		NM_020438	ENSG00000167130	DOLPP1	LSFR2	dolichyldiphosphatase 1	protein-coding
138995	chr2	218320821	218321080	+	0	NA	intron (NM_015488, intron 2 of 9)	intron (NM_015488, intron 2 of 9)	-2229	NM_022572	25953		NM_015488	ENSG00000127838	PNKD	BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|R1|TAHCCP2	PNKD metallo-beta-lactamase domain containing	protein-coding
22442	chr1	220732751	220733450	+	0	NA	Intergenic	Intergenic	-15222	NM_017898	54996		NM_017898	ENSG00000117791	MTARC2	MARC2|MOSC2	mitochondrial amidoxime reducing component 2	protein-coding
230375	chr9	128078071	128078380	+	0	NA	intron (NM_001006641, intron 1 of 9)	MIRb|SINE|MIR	10025	NM_001006641	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
43821	chr11	86781501	86781700	+	0	NA	Intergenic	Intergenic	-9471	NM_001293180	11098		NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	serine protease 23	protein-coding
1345	chr1	2481301	2481630	+	0	NA	intron (NM_001303013, intron 4 of 21)	intron (NM_001303013, intron 4 of 21)	5150	NM_001303013	9651		NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding
224788	chr9	22102351	22102650	+	0	NA	intron (NR_047532, intron 9 of 13)	MLT1C|LTR|ERVL-MaLR	-93187	NM_078487	1030		NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding
212021	chr7	114924301	114924800	+	0	NA	TTS (NM_001166346)	TTS (NM_001166346)	2396	NM_001166345	29969		NM_199072	ENSG00000135272	MDFIC	HIC|LMPHM12|MDFIC1	MyoD family inhibitor domain containing	protein-coding
102520	chr17	75812451	75813200	+	0	NA	intron (NM_001080419, intron 4 of 15)	intron (NM_001080419, intron 4 of 15)	27986	NR_038131	85451		NM_001080419	ENSG00000132478	UNK	UNKEMPT|ZC3H5|ZC3HDC5	unk zinc finger	protein-coding
70562	chr14	102589001	102589200	+	0	NA	Intergenic	Intergenic	-3549	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
147937	chr20	62930971	62931130	+	0	NA	intron (NM_022105, intron 1 of 5)	AluJb|SINE|Alu	-4499	NM_080796	11083		NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding
96040	chr17	39448871	39449700	+	0	NA	intron (NM_004774, intron 1 of 16)	AluJb|SINE|Alu	1978	NM_004774	5469		NM_004774	ENSG00000125686	MED1	CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2	mediator complex subunit 1	protein-coding
238145	chrX	136754401	136755000	+	0	NA	intron (NM_004840, intron 2 of 21)	intron (NM_004840, intron 2 of 21)	13115	NM_001306177	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
197268	chr6	70651051	70651950	+	0	NA	Intergenic	Intergenic	-16383	NM_001281439	60682		NM_021940	ENSG00000112305	SMAP1	SMAP-1	small ArfGAP 1	protein-coding
116232	chr19	17531371	17531530	+	0	NA	intron (NM_173544, intron 3 of 15)	L2b|LINE|L2	4181	NM_001321828	199786		NM_173544	ENSG00000167483	NIBAN3	BCNP1|FAM129C	niban apoptosis regulator 3	protein-coding
29747	chr10	72186551	72186850	+	0	NA	intron (NM_001369102, intron 6 of 11)	intron (NM_001369102, intron 6 of 11)	29256	NM_001369106	51008		NM_015947	ENSG00000138303	ASCC1	ASC1p50|CGI-18|SMABF2|p50	activating signal cointegrator 1 complex subunit 1	protein-coding
19634	chr1	180188121	180188580	+	0	NA	intron (NM_001004128, intron 8 of 12)	intron (NM_001004128, intron 8 of 12)	33481	NM_002826	5768		NM_002826	ENSG00000116260	QSOX1	Q6|QSCN6	quiescin sulfhydryl oxidase 1	protein-coding
6802	chr1	30903401	30903600	+	0	NA	intron (NM_014654, intron 1 of 4)	intron (NM_014654, intron 1 of 4)	5258	NM_014654	9672		NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
225014	chr9	33132171	33132730	+	0	NA	intron (NM_001378495, intron 2 of 5)	MER103C|DNA|hAT-Charlie	23758	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
186454	chr5	137734401	137734600	+	0	NA	intron (NM_017415, intron 1 of 14)	intron (NM_017415, intron 1 of 14)	1589	NM_017415	26249		NM_017415	ENSG00000146021	KLHL3	PHA2D	kelch like family member 3	protein-coding
38822	chr11	47300521	47300780	+	0	NA	intron (NR_164842, intron 23 of 33)	AluSz6|SINE|Alu	-28540	NR_120569	101928943		NR_120568	ENSG00000256746	MADD-AS1	-	MADD antisense RNA 1	ncRNA
163827	chr3	52451571	52452630	+	0	NA	intron (NM_003280, intron 3 of 5)	intron (NM_003280, intron 3 of 5)	1941	NM_003280	7134		NM_003280	ENSG00000114854	TNNC1	CMD1Z|CMH13|TN-C|TNC|TNNC	troponin C1, slow skeletal and cardiac type	protein-coding
31765	chr10	98030401	98031130	+	0	NA	promoter-TSS (NM_018058)	promoter-TSS (NM_018058)	63	NM_001206528	55118		NM_018058	ENSG00000095713	CRTAC1	ASPIC|ASPIC1|CEP-68|CEP68|LOTUS	cartilage acidic protein 1	protein-coding
73155	chr15	41427301	41427780	+	0	NA	intron (NM_015138, intron 1 of 17)	AluJb|SINE|Alu	10436	NM_015138	23168		NM_015138	ENSG00000137815	RTF1	GTL7|KIAA0252	RTF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
38993	chr11	47640171	47640330	+	0	NA	intron (NM_001317232, intron 1 of 11)	AluSq2|SINE|Alu	2309	NM_014342	23788		NM_014342	ENSG00000109919	MTCH2	HSPC032|MIMP|SLC25A50	mitochondrial carrier 2	protein-coding
211679	chr7	106424951	106425450	+	0	NA	Intergenic	Intergenic	-140217	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
183236	chr5	76382771	76382930	+	0	NA	Intergenic	AluSx|SINE|Alu	-20435	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
176438	chr4	89282551	89282880	+	0	NA	intron (NM_198281, intron 1 of 1)	intron (NM_198281, intron 1 of 1)	25085	NM_198281	285513		NM_198281	ENSG00000185477	GPRIN3	GRIN3	GPRIN family member 3	protein-coding
165187	chr3	72445801	72447830	+	0	NA	promoter-TSS (NM_012234)	promoter-TSS (NM_012234)	-192	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
107173	chr18	35499101	35499300	+	0	NA	Intergenic	Intergenic	-1240	NM_001098817	125476		NM_194281	ENSG00000153391	INO80C	C18orf37|IES6|hIes6	INO80 complex subunit C	protein-coding
153066	chr22	23300421	23300680	+	0	NA	intron (NM_004327, intron 16 of 22)	intron (NM_004327, intron 16 of 22)	-26066	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
134574	chr2	144233021	144235050	+	0	NA	intron (NM_001376321, intron 1 of 9)	intron (NM_001376321, intron 1 of 9)	3304	NM_024659	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
85212	chr16	47143071	47144530	+	0	NA	promoter-TSS (NR_110903)	promoter-TSS (NR_110903)	145	NM_018092	81831		NM_018092	ENSG00000171208	NETO2	BTCL2|NEOT2	neuropilin and tolloid like 2	protein-coding
31790	chr10	98276351	98276950	+	0	NA	Intergenic	Intergenic	-8456	NM_032211	84171		NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding
200158	chr6	130514921	130515380	+	0	NA	Intergenic	Intergenic	78033	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
76706	chr15	75840421	75840900	+	0	NA	Intergenic	Intergenic	-2787	NM_001284382	92912		NM_173469	ENSG00000140367	UBE2Q2	-	ubiquitin conjugating enzyme E2 Q2	protein-coding
92446	chr17	8468601	8470100	+	0	NA	Intergenic	Intergenic	33466	NM_001330129	81565		NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding
43783	chr11	86268621	86269280	+	0	NA	intron (NM_003797, intron 9 of 11)	MER58A|DNA|hAT-Charlie	-9383	NR_106813	102465452		NR_106813	ENSG00000283744	MIR6755	hsa-mir-6755	microRNA 6755	ncRNA
184756	chr5	109868721	109869030	+	0	NA	3' UTR (NM_002372, exon 22 of 22)	3' UTR (NM_002372, exon 22 of 22)	-14307	NR_033175	100289673		NR_033175		LINC01848	-	long intergenic non-protein coding RNA 1848	ncRNA
162288	chr3	47405571	47405730	+	0	NA	intron (NM_001304482, intron 3 of 23)	intron (NM_001304482, intron 3 of 23)	24629	NM_015466	25930		NM_015466	ENSG00000076201	PTPN23	HD-PTP|HDPTP|NEDBASS|PTP-TD14	protein tyrosine phosphatase non-receptor type 23	protein-coding
163321	chr3	50367551	50368330	+	0	NA	non-coding (NR_111912, exon 4 of 4)	non-coding (NR_111912, exon 4 of 4)	2577	NR_111913	101928965		NR_111913	ENSG00000271858	LOC101928965	-	uncharacterized LOC101928965	ncRNA
232346	chr9	135498971	135500100	+	0	NA	promoter-TSS (NM_001371401)	promoter-TSS (NM_001371401)	334	NM_144654	138162		NM_144654	ENSG00000160345	PIERCE1	C9orf116|RbEST47	piercer of microtubule wall 1	protein-coding
151934	chr22	19073871	19074230	+	0	NA	intron (NM_001173533, intron 1 of 8)	intron (NM_001173533, intron 1 of 8)	-25675	NR_024157	25786		NR_024157	ENSG00000273311	DGCR11	DGS-D	DiGeorge syndrome critical region gene 11	ncRNA
43056	chr11	74390001	74390200	+	0	NA	intron (NM_173582, intron 1 of 13)	AluY|SINE|Alu	8333	NM_173582	283209		NM_173582	ENSG00000165434	PGM2L1	BM32A|NEDHFS|PMMLP	phosphoglucomutase 2 like 1	protein-coding
143603	chr20	31710851	31711480	+	0	NA	intron (NR_134257, intron 1 of 2)	MIRb|SINE|MIR	-10342	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
35037	chr11	573821	574450	+	0	NA	non-coding (NR_026967, exon 1 of 1)	non-coding (NR_026967, exon 1 of 1)	1750	NR_026967	143666		NR_026967		LOC143666	-	uncharacterized LOC143666	ncRNA
74605	chr15	60584251	60585100	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	7851	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
92628	chr17	10113921	10114900	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-77753	NM_201432	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
159349	chr3	13204201	13204400	+	0	NA	intron (NM_001376938, intron 1 of 15)	CpG	78957	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
129085	chr2	65111821	65112530	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSz|SINE|Alu	17931	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
47742	chr12	6520221	6520480	+	0	NA	intron (NM_014865, intron 13 of 31)	AluJb|SINE|Alu	10128	NR_004387	692148		NR_004387	ENSG00000239002	SCARNA10	MBI|U85|lnc	small Cajal body-specific RNA 10	ncRNA
120893	chr19	45588571	45589050	+	0	NA	TTS (NM_005282)	TTS (NM_005282)	-4008	NM_001017989	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
213699	chr7	140210201	140211080	+	0	NA	Intergenic	Intergenic	33379	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
143953	chr20	32819571	32821780	+	0	NA	intron (NM_012325, intron 1 of 6)	L2a|LINE|L2	721	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
192974	chr6	27890221	27891130	+	0	NA	exon (NM_003535, exon 1 of 1)	exon (NM_003535, exon 1 of 1)	151	NM_003535	8356		NM_003535	ENSG00000197153	H3C12	H3/j|H3C1|H3C10|H3C11|H3C2|H3C3|H3C4|H3C6|H3C7|H3C8|H3FJ|HIST1H3J	H3 clustered histone 12	protein-coding
186040	chr5	134039171	134040430	+	0	NA	Intergenic	Intergenic	-34825	NM_003374	7416		NM_003374	ENSG00000213585	VDAC1	PORIN|VDAC-1	voltage dependent anion channel 1	protein-coding
12368	chr1	101246421	101246680	+	0	NA	Intergenic	L2c|LINE|L2	9531	NM_001400	1901		NM_001400	ENSG00000170989	S1PR1	CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1	sphingosine-1-phosphate receptor 1	protein-coding
9530	chr1	51487771	51487950	+	0	NA	intron (NM_001981, intron 1 of 24)	intron (NM_001981, intron 1 of 24)	31406	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
48521	chr12	10009651	10009750	+	0	NA	promoter-TSS (NR_135049)	promoter-TSS (NR_135049)	-927	NM_001129998	387837		NM_205852	ENSG00000256660	CLEC12B	UNQ5782	C-type lectin domain family 12 member B	protein-coding
234526	chrX	19625621	19626230	+	0	NA	intron (NM_001353892, intron 9 of 17)	MIRc|SINE|MIR	45074	NM_001184960	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
45650	chr11	119005301	119006100	+	0	NA	intron (NR_104051, intron 4 of 10)	intron (NR_104051, intron 4 of 10)	-2107	NR_003040	649946		NR_003040		RPL23AP64	RPL23A_25_1182	ribosomal protein L23a pseudogene 64	pseudo
136828	chr2	182740751	182740950	+	0	NA	intron (NR_073367, intron 10 of 22)	MADE1|DNA|TcMar-Mariner	24593	NM_001271581	54431		NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
185995	chr5	133617971	133618380	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-5634	NM_015082	23105		NM_015082	ENSG00000053108	FSTL4	-	follistatin like 4	protein-coding
50537	chr12	47904501	47906150	+	0	NA	promoter-TSS (NM_001017535)	promoter-TSS (NM_001017535)	-331	NM_001017535	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
13692	chr1	116740771	116740930	+	0	NA	Intergenic	Intergenic	-13580	NM_001328609	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
79208	chr16	351601	353700	+	0	NA	promoter-TSS (NM_003502)	promoter-TSS (NM_003502)	73	NM_003502	8312		NM_003502	ENSG00000103126	AXIN1	AXIN|CMDOH|PPP1R49	axin 1	protein-coding
122118	chr19	48810001	48810200	+	0	NA	intron (NM_001284325, intron 1 of 11)	intron (NM_001284325, intron 1 of 11)	929	NM_001284325	587		NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|HVLI|PP18	branched chain amino acid transaminase 2	protein-coding
88224	chr16	81872901	81873580	+	0	NA	intron (NM_002661, intron 7 of 32)	MIR3|SINE|MIR	93949	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
18279	chr1	161119571	161120800	+	0	NA	TTS (NM_001330765)	TTS (NM_001330765)	2067	NM_001185094	4817		NM_005600	ENSG00000158793	NIT1	-	nitrilase 1	protein-coding
96611	chr17	40551471	40551630	+	0	NA	Intergenic	MIR3|SINE|MIR	8844	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
143704	chr20	32206221	32206600	+	0	NA	intron (NM_002657, intron 1 of 2)	intron (NM_002657, intron 1 of 2)	1333	NM_002657	5326		NM_002657	ENSG00000126003	PLAGL2	ZNF900	PLAG1 like zinc finger 2	protein-coding
12677	chr1	109424501	109425800	+	0	NA	intron (NM_001199774, intron 1 of 8)	L2a|LINE|L2	1298	NM_001199772	5686		NM_002790	ENSG00000143106	PSMA5	PSC5|ZETA	proteasome 20S subunit alpha 5	protein-coding
33522	chr10	119213721	119214500	+	0	NA	intron (NM_005308, intron 1 of 15)	AluSx1|SINE|Alu	6539	NM_005308	2869		NM_005308	ENSG00000198873	GRK5	FP2025|GPRK5	G protein-coupled receptor kinase 5	protein-coding
68773	chr14	91116471	91117580	+	0	NA	intron (NM_001286471, intron 1 of 13)	MER41B|LTR|ERV1	2325	NM_001286471	80017		NM_024952	ENSG00000133943	DGLUCY	C14orf159	D-glutamate cyclase	protein-coding
206985	chr7	38321001	38321500	+	0	NA	Intergenic	Intergenic	-20327	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
10230	chr1	63316751	63317650	+	0	NA	promoter-TSS (NR_038252)	promoter-TSS (NR_038252)	57	NR_038252	199899		NR_038252	ENSG00000224209	LINC00466	-	long intergenic non-protein coding RNA 466	ncRNA
210270	chr7	99411621	99411980	+	0	NA	intron (NM_001370410, intron 3 of 5)	AluSz|SINE|Alu	2628	NR_162133	113219453		NR_162133		MIR12119	-	microRNA 12119	ncRNA
107720	chr18	49812901	49814650	+	0	NA	promoter-TSS (NM_006111)	promoter-TSS (NM_006111)	-242	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
216802	chr8	22554471	22554630	+	0	NA	exon (NM_005775, exon 2 of 21)	exon (NM_005775, exon 2 of 21)	2623	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
195069	chr6	35516671	35517100	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-3989	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
35814	chr11	2217151	2217930	+	0	NA	Intergenic	Intergenic	44477	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
47308	chr12	1693451	1693750	+	0	NA	intron (NM_001375365, intron 1 of 7).2	AluSq2|SINE|Alu	2530	NM_024551	79602		NM_024551	ENSG00000006831	ADIPOR2	ACDCR2|PAQR2	adiponectin receptor 2	protein-coding
61970	chr13	79448421	79449130	+	0	NA	Intergenic	Intergenic	-32349	NM_001161407	54602		NM_019080	ENSG00000102471	NDFIP2	N4WBP5A	Nedd4 family interacting protein 2	protein-coding
66199	chr14	61252671	61253300	+	0	NA	Intergenic	Intergenic	28353	NM_001017970	161291		NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
8788	chr1	42922821	42923500	+	0	NA	Intergenic	Intergenic	35708	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
1929	chr1	6486431	6487130	+	0	NA	promoter-TSS (NM_001042665)	promoter-TSS (NM_001042665)	-826	NM_001042665	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
6839	chr1	31032701	31033100	+	0	NA	intron (NM_014676, intron 2 of 21)	AluSx|SINE|Alu	32817	NM_001020658	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
12924	chr1	110647201	110648150	+	0	NA	Intergenic	Intergenic	-16235	NM_001204269	3737		NM_004974	ENSG00000177301	KCNA2	DEE32|EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2	potassium voltage-gated channel subfamily A member 2	protein-coding
90857	chr17	2366821	2367180	+	0	NA	intron (NM_001346700, intron 11 of 22)	intron (NM_001346700, intron 11 of 22)	29499	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
82979	chr16	21957401	21957600	+	0	NA	exon (NM_003366, exon 3 of 14)	exon (NM_003366, exon 3 of 14)	4139	NM_003366	7385		NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein 2	protein-coding
145972	chr20	46341401	46341600	+	0	NA	Intergenic	Intergenic	22925	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
7605	chr1	35282921	35283380	+	0	NA	intron (NM_001375653, intron 1 of 29)	AluSz|SINE|Alu	14441	NM_001350139	9202		NM_005095	ENSG00000146463	ZMYM4	CDIR|MYM|ZNF198L3|ZNF262	zinc finger MYM-type containing 4	protein-coding
235471	chrX	46611571	46612400	+	0	NA	intron (NM_001257291, intron 16 of 16)	intron (NM_001257291, intron 16 of 16)	38220	NM_019886	56548		NM_019886	ENSG00000147119	CHST7	C6ST-2|GST-5	carbohydrate sulfotransferase 7	protein-coding
176361	chr4	88515671	88516630	+	0	NA	Intergenic	AluY|SINE|Alu	7626	NM_001042616	84992		NM_001042616	ENSG00000255072	PIGY	HPMRS6|PIG-Y	phosphatidylinositol glycan anchor biosynthesis class Y	protein-coding
16645	chr1	155134071	155134680	+	0	NA	promoter-TSS (NM_001287590)	promoter-TSS (NM_001287590)	-1000	NM_001287590	55974		NM_018845	ENSG00000169241	SLC50A1	HsSWEET1|RAG1AP1|SCP|SWEET1|slv	solute carrier family 50 member 1	protein-coding
21870	chr1	207672571	207672730	+	0	NA	intron (NM_175710, intron 1 of 11)	L1MCa|LINE|L1	27517	NM_175710	1379		NM_175710	ENSG00000197721	CR1L	-	complement C3b/C4b receptor 1 like	protein-coding
214025	chr7	143284401	143284600	+	0	NA	promoter-TSS (NM_001282876)	promoter-TSS (NM_001282876)	-399	NR_104253	135932		NM_153345	ENSG00000178826	TMEM139	-	transmembrane protein 139	protein-coding
27311	chr10	30491271	30491430	+	0	NA	Intergenic	Intergenic	56704	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
215423	chr7	157628901	157629100	+	0	NA	intron (NM_130842, intron 13 of 21)	intron (NM_130842, intron 13 of 21)	-54578	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
80705	chr16	3069421	3070250	+	0	NA	TTS (NM_001376923)	TTS (NM_001376923)	4051	NM_001012636	9235		NM_004221	ENSG00000008517	IL32	IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd	interleukin 32	protein-coding
175514	chr4	74228701	74228980	+	0	NA	intron (NM_001144978, intron 6 of 7)	intron (NM_001144978, intron 6 of 7)	70722	NM_001004346	441024		NM_001004346	ENSG00000163738	MTHFD2L	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like	protein-coding
199052	chr6	111486101	111486380	+	0	NA	intron (NR_034111, intron 3 of 3)	AluSg|SINE|Alu	-2525	NM_001286432	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
221463	chr8	124452321	124452980	+	0	NA	3' UTR (NM_017956, exon 1 of 1)	3' UTR (NM_017956, exon 1 of 1)	1830	NM_017956	55039		NM_017956	ENSG00000183665	TRMT12	TRM12|TYW2	tRNA methyltransferase 12 homolog	protein-coding
11251	chr1	88993701	88995550	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1665	NR_146184	56267		NM_001008661	ENSG00000137944	KYAT3	CCBL2|KAT3|KATIII	kynurenine aminotransferase 3	protein-coding
15259	chr1	149633521	149634500	+	0	NA	intron (NR_111950, intron 1 of 8)	LTR71B|LTR|ERV1	26998	NR_111953	57234		NR_046135	ENSG00000291158	LINC00869	FAM91A2	long intergenic non-protein coding RNA 869	ncRNA
211646	chr7	106254251	106254550	+	0	NA	exon (NM_005746, exon 9 of 11)	exon (NM_005746, exon 9 of 11)	30583	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
224294	chr9	6432921	6433600	+	0	NA	intron (NR_046386, intron 2 of 16)	intron (NR_046386, intron 2 of 16)	20061	NM_152896	115426		NM_152306	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding
95383	chr17	35890501	35891700	+	0	NA	Intergenic	Intergenic	-10740	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
111140	chr19	3280401	3280700	+	0	NA	intron (NM_021938, intron 5 of 12)	AluSq2|SINE|Alu	55272	NR_033342	60680		NM_021938	ENSG00000161082	CELF5	BRUNOL-5|BRUNOL5|CELF-5	CUGBP Elav-like family member 5	protein-coding
102871	chr17	76509751	76510150	+	0	NA	Intergenic	AluY|SINE|Alu	-8523	NM_024599	79651		NM_024599	ENSG00000129667	RHBDF2	RHBDL5|RHBDL6|TOC|TOCG|iRhom2	rhomboid 5 homolog 2	protein-coding
128872	chr2	64040171	64040630	+	0	NA	Intergenic	HAL1|LINE|L1	-20972	NM_001005739	51542		NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54 subunit of GARP complex	protein-coding
180936	chr5	34914971	34916580	+	0	NA	promoter-TSS (NM_002853)	promoter-TSS (NM_002853)	64	NM_018321	55299		NM_018321	ENSG00000113460	BRIX1	BRIX|BXDC2	biogenesis of ribosomes BRX1	protein-coding
56218	chr12	111601001	111601200	+	0	NA	TTS (NR_146497)	TTS (NR_146497)	-1424	NR_132311	6311		NM_002973	ENSG00000204842	ATXN2	ATX2|SCA2|TNRC13	ataxin 2	protein-coding
65753	chr14	53953171	53953800	+	0	NA	promoter-TSS (NM_001347915)	promoter-TSS (NM_001347915)	-10	NM_001347915	652		NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
49085	chr12	14443601	14443800	+	0	NA	intron (NM_181352, intron 5 of 14)	L1M5|LINE|L1	58419	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
69379	chr14	94031401	94032230	+	0	NA	intron (NM_023112, intron 1 of 5)	intron (NM_023112, intron 1 of 5)	5475	NM_023112	78990		NM_023112	ENSG00000089723	OTUB2	C14orf137|OTB2|OTU2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein-coding
195363	chr6	36677401	36677850	+	0	NA	TTS (NR_144384)	TTS (NR_144384)	934	NR_144384	108783646		NR_144384	ENSG00000285244	DINOL	DINO	damage induced long noncoding RNA	ncRNA
210543	chr7	100270101	100270330	+	0	NA	intron (NR_166147, intron 1 of 4)	intron (NR_166147, intron 1 of 4)	1990	NR_028038	352954		NM_178831	ENSG00000291122	CASTOR3P	CASTOR3|GATS|STAG3OS	CASTOR family member 3, pseudogene	pseudo
138482	chr2	207073821	207074300	+	0	NA	TTS (NM_001270942)	TTS (NM_001270942)	36013	NR_036227	100423036		NR_036227	ENSG00000253008	MIR2355	mir-2355	microRNA 2355	ncRNA
76223	chr15	73926501	73928400	+	0	NA	exon (NM_005576, exon 1 of 7)	exon (NM_005576, exon 1 of 7)	336	NR_040066	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
159043	chr3	11306601	11307430	+	0	NA	exon (NM_001144912, exon 4 of 17)	exon (NM_001144912, exon 4 of 17)	34618	NM_001144912	10533		NM_006395	ENSG00000197548	ATG7	APG7-LIKE|APG7L|GSA7|SCAR31	autophagy related 7	protein-coding
88712	chr16	85919271	85919430	+	0	NA	TTS (NR_106832)	TTS (NR_106832)	1003	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA
66027	chr14	58275601	58275880	+	0	NA	intron (NR_029435, intron 2 of 3)	L1ME1|LINE|L1	-12293	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
51954	chr12	53751071	53752350	+	0	NA	intron (NR_104332, intron 2 of 2)	CpG	125	NR_104333	102216268		NR_104332	ENSG00000260492	CISTR	CISTR-ACT|CISTRACT|re52431	chondrogenesis-associated transcript	ncRNA
124097	chr19	55646121	55646580	+	0	NA	TTS (NM_016535)	TTS (NM_016535)	-1050	NM_001370467	29903		NM_013301	ENSG00000173581	CCDC106	HSU79303|ZNF581	coiled-coil domain containing 106	protein-coding
167594	chr3	129564051	129564530	+	0	NA	intron (NM_015103, intron 25 of 35)	MIRc|SINE|MIR	15905	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
77426	chr15	84142821	84143280	+	0	NA	Intergenic	Intergenic	27934	NR_033787	440299		NR_033787		DNM1P41	DNM1DN11-6|DNM1DN11.6|DNM1DN11@	dynamin 1 pseudogene 41	pseudo
62134	chr13	95684451	95685100	+	0	NA	intron (NM_006260, intron 1 of 11)	MSTA-int|LTR|ERVL-MaLR	7636	NM_006260	5611		NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI|p58(IPK)	DnaJ heat shock protein family (Hsp40) member C3	protein-coding
151078	chr21	44814751	44816030	+	0	NA	intron (NM_001286416, intron 1 of 3)	intron (NM_001286416, intron 1 of 3)	2672	NM_006936	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
135255	chr2	159722201	159722400	+	0	NA	intron (NM_001376237, intron 2 of 10)	AluSz6|SINE|Alu	9794	NM_001376255	64844		NM_022826	ENSG00000136536	MARCHF7	AXO|AXOT|MARCH-VII|MARCH7|RNF177	membrane associated ring-CH-type finger 7	protein-coding
28143	chr10	43443451	43443750	+	0	NA	intron (NM_001355444, intron 1 of 3)	AluSx|SINE|Alu	6489	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
37216	chr11	14393671	14394230	+	0	NA	Intergenic	Intergenic	-29444	NM_001177314	22800		NM_012250	ENSG00000133818	RRAS2	NS12|TC21	RAS related 2	protein-coding
48670	chr12	10544271	10544430	+	0	NA	Intergenic	L2b|LINE|L2	-9029	NR_146455	101060038		NR_146455	ENSG00000256039	LINC02446	-	long intergenic non-protein coding RNA 2446	ncRNA
211990	chr7	113710321	113710600	+	0	NA	Intergenic	Intergenic	208549	NM_002711	5506		NM_002711	ENSG00000154415	PPP1R3A	GM|PP1G|PPP1R3	protein phosphatase 1 regulatory subunit 3A	protein-coding
223121	chr8	143471251	143471550	+	0	NA	intron (NM_015117, intron 5 of 11)	intron (NM_015117, intron 5 of 11)	34848	NR_145785	109623485		NR_145785		SNORD149	-	small nucleolar RNA, C/D box 149	snoRNA
36413	chr11	4092951	4093400	+	0	NA	TTS (NR_168437)	TTS (NR_168437)	-1510	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
225881	chr9	39559451	39559630	+	0	NA	Intergenic	Intergenic	-95014	NR_003528	401509		NM_001032297		ZNF658B	-	zinc finger protein 658B (pseudogene)	pseudo
52221	chr12	54385821	54386750	+	0	NA	promoter-TSS (NM_001290004)	promoter-TSS (NM_001290004)	-506	NM_001290002	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
131412	chr2	96281901	96282280	+	0	NA	intron (NM_014014, intron 34 of 44)	intron (NM_014014, intron 34 of 44)	15865	NM_004804	9391		NM_004804	ENSG00000144021	CIAO1	CIA1|WDR39	cytosolic iron-sulfur assembly component 1	protein-coding
40639	chr11	64721551	64721650	+	0	NA	intron (NM_015080, intron 1 of 22)	intron (NM_015080, intron 1 of 22)	1597	NM_001376263	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
87803	chr16	75516551	75518250	+	0	NA	Intergenic	CpG	18708	NM_024533	23563		NM_012126	ENSG00000135702	CHST5	I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST	carbohydrate sulfotransferase 5	protein-coding
192038	chr6	16474861	16475680	+	0	NA	intron (NM_000332, intron 7 of 8)	intron (NM_000332, intron 7 of 8)	236683	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
740	chr1	1479371	1480100	+	0	NA	intron (NM_031921, intron 4 of 15)	intron (NM_031921, intron 4 of 15)	1886	NM_001317238	83858		NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family AAA domain containing 3B	protein-coding
193529	chr6	30592351	30592930	+	0	NA	Intergenic	Intergenic	8308	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
2555	chr1	9738001	9738780	+	0	NA	intron (NM_014944, intron 9 of 17)	intron (NM_014944, intron 9 of 17)	46923	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
82060	chr16	13904971	13905130	+	0	NA	Intergenic	LTR13|LTR|ERVK	-15104	NM_005236	2072		NM_005236	ENSG00000175595	ERCC4	ERCC11|FANCQ|RAD1|XFEPS|XPF	ERCC excision repair 4, endonuclease catalytic subunit	protein-coding
3379	chr1	15695671	15696080	+	0	NA	intron (NM_015164, intron 1 of 19)	AluJb|SINE|Alu	11555	NM_015164	23207		NM_015164	ENSG00000116786	PLEKHM2	SKIP	pleckstrin homology and RUN domain containing M2	protein-coding
52420	chr12	55797101	55797330	+	0	NA	intron (NM_033082, intron 4 of 10)	intron (NM_033082, intron 4 of 10)	20509	NM_033082	84324		NM_033082	ENSG00000205323	SARNP	CIP29|HCC1|HSPC316|THO1	SAP domain containing ribonucleoprotein	protein-coding
61603	chr13	73224701	73224930	+	0	NA	Intergenic	Intergenic	165810	NM_001730	688		NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	KLF transcription factor 5	protein-coding
215055	chr7	152706921	152707280	+	0	NA	Intergenic	Intergenic	-30959	NM_005431	7516		NM_005431	ENSG00000196584	XRCC2	FANCU|POF17|SPGF50	X-ray repair cross complementing 2	protein-coding
214453	chr7	150286071	150286650	+	0	NA	intron (NR_147012, intron 5 of 10)	intron (NR_147012, intron 5 of 10)	16620	NM_001164459	653857		NM_001164458	ENSG00000106526	ACTR3C	ARP11	actin related protein 3C	protein-coding
20428	chr1	198253751	198254100	+	0	NA	intron (NM_133494, intron 3 of 9)	intron (NM_133494, intron 3 of 9)	96927	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
88172	chr16	81711471	81712130	+	0	NA	TTS (NM_198390)	TTS (NM_198390)	46446	NR_045112	100129617		NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA
225335	chr9	34628301	34629780	+	0	NA	promoter-TSS (NM_001371945)	promoter-TSS (NM_001371945)	15	NM_001371945	138715		NM_001017363	ENSG00000205143	ARID3C	-	AT-rich interaction domain 3C	protein-coding
171970	chr4	910201	910600	+	0	NA	intron (NM_001318134, intron 1 of 24)	intron (NM_001318134, intron 1 of 24)	21916	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
62635	chr13	101258101	101258380	+	0	NA	intron (NM_052867, intron 11 of 43)	intron (NM_052867, intron 11 of 43)	158268	NM_001350748	259232		NM_052867	ENSG00000102452	NALCN	CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding
3947	chr1	18630071	18630430	+	0	NA	promoter-TSS (NM_002584)	promoter-TSS (NM_002584)	-596	NM_002584	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
152475	chr22	20734951	20735380	+	0	NA	intron (NM_001362863, intron 31 of 53)	intron (NM_001362863, intron 31 of 53)	34051	NR_026815	84222		NM_032262	ENSG00000291085	TMEM191A	TMEM191AP	transmembrane protein 191A (pseudogene)	pseudo
84389	chr16	30311551	30312050	+	0	NA	intron (NR_002453, intron 1 of 12)	MER77B|LTR|ERVL	23574	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
82095	chr16	14436371	14437130	+	0	NA	exon (NM_001242992, exon 23 of 23)	exon (NM_001242992, exon 23 of 23)	-66484	NR_131191	105447648		NR_131191	ENSG00000260009	LINC02130	-	long intergenic non-protein coding RNA 2130	ncRNA
4898	chr1	23802651	23803300	+	0	NA	intron (NM_001166059, intron 6 of 6)	MIRb|SINE|MIR	-2221	NM_001008216	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
38499	chr11	45876851	45877150	+	0	NA	intron (NM_021117, intron 11 of 11)	MIR3|SINE|MIR	-8651	NM_005456	9479		NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding
191435	chr6	10531501	10531900	+	0	NA	intron (NM_145649, intron 3 of 4)	L3|LINE|CR1	3330	NM_001374747	2651		NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein-coding
198638	chr6	107793171	107794150	+	0	NA	intron (NM_198081, intron 1 of 7)	intron (NM_198081, intron 1 of 7)	30653	NM_198081	256380		NM_198081	ENSG00000146285	SCML4	dJ47M23.1	Scm polycomb group protein like 4	protein-coding
87263	chr16	69985001	69986150	+	0	NA	intron (NR_003610, intron 21 of 25)	intron (NR_003610, intron 21 of 25)	34462	NM_001370523	348174		NM_182619	ENSG00000157322	CLEC18A	MRCL|MRCL1|MRLP2	C-type lectin domain family 18 member A	protein-coding
183009	chr5	72818751	72819430	+	0	NA	intron (NM_001364292, intron 1 of 24)	MSTB2|LTR|ERVL-MaLR	2429	NM_001364292	3842		NM_002270	ENSG00000083312	TNPO1	IPO2|KPNB2|MIP|MIP1|TRN	transportin 1	protein-coding
86466	chr16	66944721	66945400	+	0	NA	TTS (NM_001365408)	TTS (NM_001365408)	9544	NM_198061	8824		NM_003869	ENSG00000172831	CES2	CE-2|CES2A1|PCE-2|iCE	carboxylesterase 2	protein-coding
56026	chr12	110428971	110429480	+	0	NA	Intergenic	Intergenic	21112	NM_001278556	10094		NM_001278556	ENSG00000111229	ARPC3	ARC21|p21-Arc	actin related protein 2/3 complex subunit 3	protein-coding
216906	chr8	22694201	22694600	+	0	NA	promoter-TSS (NM_004430)	promoter-TSS (NM_004430)	-920	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
37028	chr11	12112171	12112850	+	0	NA	intron (NR_144415, intron 1 of 26)	intron (NR_144415, intron 1 of 26)	1920	NR_144416	9645		NM_014632	ENSG00000133816	MICAL2	Ebitein1|MICAL-2|MICAL2PV1|MICAL2PV2|MICALCL|mical-cL	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
709	chr1	1426001	1426300	+	0	NA	promoter-TSS (NM_001146685)	promoter-TSS (NM_001146685)	22	NM_001146685	643965		NM_001146685	ENSG00000205116	TMEM88B	-	transmembrane protein 88B	protein-coding
152562	chr22	21044651	21045000	+	0	NA	promoter-TSS (NR_002829)	promoter-TSS (NR_002829)	-576	NR_002829	440799		NR_002829		P2RX6P	-	purinergic receptor P2X 6 pseudogene	pseudo
220368	chr8	99863851	99864150	+	0	NA	intron (NM_152564, intron 58 of 61)	intron (NM_152564, intron 58 of 61)	29707	NM_004374	1345		NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding
11450	chr1	89854051	89854450	+	0	NA	intron (NM_001134479, intron 2 of 2)	L2b|LINE|L2	32311	NM_018103	55144		NM_018103	ENSG00000171492	LRRC8D	HsLRRC8D|LRRC5	leucine rich repeat containing 8 VRAC subunit D	protein-coding
134225	chr2	134717771	134718330	+	0	NA	intron (NM_030923, intron 1 of 7)	intron (NM_030923, intron 1 of 7)	950	NM_030923	81615		NM_030923	ENSG00000152128	TMEM163	DC29|HLD25|SLC30A11|SV31	transmembrane protein 163	protein-coding
16144	chr1	153673421	153673680	+	0	NA	Intergenic	Intergenic	-2522	NM_001267809	3608		NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding
226187	chr9	65144871	65145130	+	0	NA	promoter-TSS (NR_136299).4	promoter-TSS (NR_136299).4	67	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
160196	chr3	23810401	23811200	+	0	NA	intron (NM_001202476, intron 1 of 4)	CpG	346	NM_001202476	7324		NM_003341	ENSG00000170142	UBE2E1	UBCH6	ubiquitin conjugating enzyme E2 E1	protein-coding
15317	chr1	149866901	149867330	+	0	NA	Intergenic	Intergenic	-5956	NM_003548	8370		NM_003548	ENSG00000270882	H4C14	FO108|H4|H4-16|H4/n|H4C1|H4C11|H4C12|H4C13|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2|H4FN|HIST2H4|HIST2H4A	H4 clustered histone 14	protein-coding
216656	chr8	22129401	22130380	+	0	NA	intron (NM_018411, intron 1 of 17)	intron (NM_018411, intron 1 of 17)	1120	NM_005144	55806		NM_005144	ENSG00000168453	HR	ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1	HR lysine demethylase and nuclear receptor corepressor	protein-coding
116150	chr19	17383971	17384430	+	0	NA	Intergenic	Intergenic	-6858	NM_031310	83483		NM_031310	ENSG00000130300	PLVAP	DIAR10|FELS|PV-1|PV1|gp68	plasmalemma vesicle associated protein	protein-coding
166014	chr3	108223921	108225200	+	0	NA	Intergenic	Intergenic	-2136	NM_018010	55081		NM_018010	ENSG00000114446	IFT57	ESRRBL1|HIPPI|MHS4R2|OFD18	intraflagellar transport 57	protein-coding
5745	chr1	26474071	26474380	+	0	NA	intron (NM_005517, intron 4 of 5)	intron (NM_005517, intron 4 of 5)	1785	NM_005517	3151		NM_005517	ENSG00000198830	HMGN2	HMG17	high mobility group nucleosomal binding domain 2	protein-coding
117740	chr19	29622191	29622880	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	16252	NR_027368	10775		NM_006627	ENSG00000105171	POP4	RPP29	POP4 homolog, ribonuclease P/MRP subunit	protein-coding
139182	chr2	219217271	219218200	+	0	NA	exon (NM_005689, exon 2 of 19)	exon (NM_005689, exon 2 of 19)	1223	NM_005689	10058		NM_005689	ENSG00000115657	ABCB6	ABC|LAN|MTABC3|PRP|umat	ATP binding cassette subfamily B member 6 (LAN blood group)	protein-coding
220396	chr8	100251251	100251550	+	0	NA	Intergenic	AluSz6|SINE|Alu	50793	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
68113	chr14	75453971	75454230	+	0	NA	intron (NM_001135048, intron 2 of 3)	intron (NM_001135048, intron 2 of 3)	21966	NM_001135049	122953		NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
204045	chr7	1943371	1945150	+	0	NA	intron (NM_001304524, intron 14 of 16)	L1MB7|LINE|L1	-3689	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
128976	chr2	64666771	64667700	+	0	NA	Intergenic	Intergenic	-13322	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
180832	chr5	32534501	32535500	+	0	NA	Intergenic	Intergenic	-50557	NM_006713	10923		NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 regulator of transcription	protein-coding
41700	chr11	66642651	66643030	+	0	NA	intron (NM_001198844, intron 2 of 2)	intron (NM_001198844, intron 2 of 2)	4137	NM_001198844	5936		NM_002896	ENSG00000173933	RBM4	LARK|RBM4A|ZCCHC21|ZCRB3A	RNA binding motif protein 4	protein-coding
166387	chr3	113501651	113501750	+	0	NA	intron (NM_144718, intron 3 of 17)	L1MB7|LINE|L1	13144	NM_001331079	152185		NM_144718	ENSG00000163611	SPICE1	CCDC52|SPICE	spindle and centriole associated protein 1	protein-coding
6168	chr1	27420801	27421000	+	0	NA	intron (NM_006990, intron 2 of 8)	intron (NM_006990, intron 2 of 8)	28278	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
205443	chr7	17026321	17026580	+	0	NA	Intergenic	Intergenic	-144467	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
10431	chr1	66169301	66169540	+	0	NA	intron (NM_001037340, intron 1 of 14)	intron (NM_001037340, intron 1 of 14)	-118702	NR_123718	101927139		NR_123718	ENSG00000227466	PDE4B-AS1	-	PDE4B antisense RNA 1	ncRNA
160168	chr3	23055971	23056130	+	0	NA	Intergenic	Intergenic	146528	NR_136177	100505877		NR_136176	ENSG00000233153	UBE2E2-DT	UBE2E2-AS1	UBE2E2 divergent transcript	ncRNA
176789	chr4	102511121	102511750	+	0	NA	intron (NM_001382625, intron 2 of 24)	AluJo|SINE|Alu	-8949	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
54052	chr12	75959221	75959680	+	0	NA	Intergenic	Intergenic	72326	NM_007350	22822		NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding
103694	chr17	78811671	78812250	+	0	NA	intron (NR_169585, intron 13 of 19)	AluJo|SINE|Alu	28854	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
145876	chr20	45942401	45943200	+	0	NA	intron (NM_022104, intron 7 of 16)	AluJb|SINE|Alu	8117	NM_022104	63935		NM_022104	ENSG00000100982	PCIF1	C20orf67|CAPAM|MT-A70|PPP1R121|hCAPAM|hPCIF1	phosphorylated CTD interacting factor 1	protein-coding
48903	chr12	12558371	12558730	+	0	NA	intron (NM_030640, intron 1 of 6)	AluJb|SINE|Alu	4313	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
182762	chr5	68297671	68297830	+	0	NA	3' UTR (NM_181504, exon 10 of 10)	3' UTR (NM_181504, exon 10 of 10)	5173	NM_001242466	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
200523	chr6	136226251	136226900	+	0	NA	Intergenic	Intergenic	23736	NM_001318738	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
119965	chr19	41891871	41892630	+	0	NA	intron (NM_004706, intron 5 of 28)	intron (NM_004706, intron 5 of 28)	7807	NM_199002	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
235556	chrX	47251001	47251830	+	0	NA	Intergenic	AluSg|SINE|Alu	18406	NM_001371072	8237		NM_004651	ENSG00000102226	USP11	UHX1	ubiquitin specific peptidase 11	protein-coding
19514	chr1	175297321	175297880	+	0	NA	Intergenic	Intergenic	-104613	NM_001319230	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
124108	chr19	55658251	55659000	+	0	NA	intron (NM_007279, intron 1 of 11)	intron (NM_007279, intron 1 of 11)	3590	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
170290	chr3	184324471	184325150	+	0	NA	promoter-TSS (NR_003055)	promoter-TSS (NR_003055)	-886	NR_003055	692107		NR_003055	ENSG00000212158	SNORD66	HBII-142	small nucleolar RNA, C/D box 66	snoRNA
45926	chr11	120952571	120953030	+	0	NA	intron (NR_133004, intron 1 of 2)	intron (NR_133004, intron 1 of 2)	5239	NR_133004	101929208		NR_133004		LOC101929208	-	uncharacterized LOC101929208	ncRNA
132843	chr2	110805871	110806550	+	0	NA	intron (NM_001371254, intron 9 of 18)	intron (NM_001371254, intron 9 of 18)	73637	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
23081	chr1	226649701	226650130	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	25153	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
179663	chr4	189940221	189941530	+	0	NA	promoter-TSS (NR_149039)	promoter-TSS (NR_149039)	3	NM_004477	2483		NM_004477	ENSG00000109536	FRG1	FRG1A|FSG1	FSHD region gene 1	protein-coding
230918	chr9	129321921	129322380	+	0	NA	non-coding (NR_149714, exon 2 of 2)	non-coding (NR_149714, exon 2 of 2)	1134	NR_149714	414318		NR_149714		LINC02913	C9orf106	long intergenic non-protein coding RNA 2913	ncRNA
101120	chr17	65024371	65024530	+	0	NA	intron (NM_001282425, intron 2 of 3)	Cheshire|DNA|hAT-Charlie	31324	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
130070	chr2	74475921	74476180	+	0	NA	intron (NM_001365575, intron 5 of 8)	(AC)n|Simple_repeat|Simple_repeat	-3370	NM_053050	116540		NM_053050	ENSG00000204822	MRPL53	L53MT|mL53	mitochondrial ribosomal protein L53	protein-coding
201626	chr6	149446851	149447550	+	0	NA	3' UTR (NM_207360, exon 6 of 6)	3' UTR (NM_207360, exon 6 of 6)	37814	NM_207360	340152		NM_207360	ENSG00000178199	ZC3H12D	C6orf95|MCPIP4|TFL|dJ281H8.1|p34	zinc finger CCCH-type containing 12D	protein-coding
54544	chr12	92139701	92140550	+	0	NA	TTS (NM_001731)	TTS (NM_001731)	1588	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
60536	chr13	41456021	41456400	+	0	NA	Intergenic	HERVE-int|LTR|ERV1	-1340	NM_014059	28984		NM_014059	ENSG00000102760	RGCC	C13orf15|RGC-32|RGC32|bA157L14.2	regulator of cell cycle	protein-coding
33425	chr10	118734051	118734150	+	0	NA	intron (NM_153810, intron 1 of 8)	intron (NM_153810, intron 1 of 8)	20870	NM_153810	143384		NM_153810	ENSG00000151893	CACUL1	C10orf46|CAC1	CDK2 associated cullin domain 1	protein-coding
184980	chr5	113518151	113518700	+	0	NA	intron (NM_001345976, intron 2 of 27)	AluJb|SINE|Alu	4731	NM_001345976	64848		NM_022828	ENSG00000047188	YTHDC2	CAHL|hYTHDC2	YTH N6-methyladenosine RNA binding protein C2	protein-coding
103793	chr17	79028351	79028950	+	0	NA	promoter-TSS (NR_040019)	promoter-TSS (NR_040019)	-995	NR_040018	100507410		NR_040018		C1QTNF1-AS1	-	C1QTNF1 antisense RNA 1	ncRNA
67341	chr14	69660251	69660750	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	48904	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
165135	chr3	71730971	71731130	+	0	NA	intron (NM_173359, intron 1 of 7)	intron (NM_173359, intron 1 of 7)	-1932	NM_001134650	317649		NM_173359	ENSG00000163412	EIF4E3	eIF-4E3|eIF4E-3	eukaryotic translation initiation factor 4E family member 3	protein-coding
224439	chr9	15311601	15311880	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-4380	NM_152574	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
196310	chr6	43057951	43058250	+	0	NA	exon (NM_015950, exon 2 of 7)	exon (NM_015950, exon 2 of 7)	1334	NM_001300848	51069		NM_015950	ENSG00000112651	MRPL2	CGI-22|MRP-L14|RPML14|uL2m	mitochondrial ribosomal protein L2	protein-coding
74104	chr15	52798771	52799600	+	0	NA	Intergenic	Intergenic	-8849	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
50952	chr12	49536971	49537130	+	0	NA	Intergenic	MIR|SINE|MIR	-1980	NM_001314030	23416		NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding
35944	chr11	2526121	2526380	+	0	NA	intron (NM_181798, intron 1 of 15)	intron (NM_181798, intron 1 of 15)	64796	NM_181798	3784		NM_000218	ENSG00000053918	KCNQ1	ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS	potassium voltage-gated channel subfamily Q member 1	protein-coding
150479	chr21	42651871	42652230	+	0	NA	Intergenic	Intergenic	-1571	NM_002606	5152		NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding
73215	chr15	41577971	41578330	+	0	NA	exon (NM_001330264, exon 19 of 19)	exon (NM_001330264, exon 19 of 19)	18178	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
29599	chr10	71745171	71745330	+	0	NA	intron (NM_022124, intron 36 of 67)	L2c|LINE|L2	-7400	NM_001168390	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
33373	chr10	117363101	117363480	+	0	NA	intron (NM_173791, intron 1 of 4)	intron (NM_173791, intron 1 of 4)	12150	NM_173791	118987		NM_173791	ENSG00000165650	PDZD8	IDDADF|PDZK8	PDZ domain containing 8	protein-coding
79161	chr16	282401	284150	+	0	NA	TTS (NM_001176)	TTS (NM_001176)	111	NM_006849	64714		NM_006849	ENSG00000185615	PDIA2	PDA2|PDI|PDIP|PDIR	protein disulfide isomerase family A member 2	protein-coding
5276	chr1	25068651	25069200	+	0	NA	Intergenic	Intergenic	45422	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
183303	chr5	76595871	76596830	+	0	NA	intron (NM_006633, intron 9 of 35)	intron (NM_006633, intron 9 of 35)	12619	NR_134278	101929109		NR_134278	ENSG00000249713	LOC101929109	-	uncharacterized LOC101929109	ncRNA
173679	chr4	15021901	15022130	+	0	NA	intron (NR_125911, intron 2 of 5)	intron (NR_125911, intron 2 of 5)	19534	NM_182646	132864		NM_182485	ENSG00000137449	CPEB2	CPE-BP2|CPEB-2|hCPEB-2	cytoplasmic polyadenylation element binding protein 2	protein-coding
147985	chr20	63004801	63005430	+	0	NA	TTS (NM_080606)	TTS (NM_080606)	1849	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
179764	chr5	270221	270590	+	0	NA	intron (NR_104613, intron 1 of 1)	intron (NR_104613, intron 1 of 1)	1119	NR_104613	102467073		NR_104613		PDCD6-DT	HRAT5	PDCD6 divergent transcript	ncRNA
181050	chr5	36146871	36147030	+	0	NA	TTS (NR_030306)	TTS (NR_030306)	1038	NR_030306	693165		NR_030306	ENSG00000207756	MIR580	MIRN580|hsa-mir-580	microRNA 580	ncRNA
138726	chr2	213153501	213154380	+	0	NA	Intergenic	Intergenic	-1484	NM_001371277	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
176617	chr4	99405421	99405820	+	0	NA	Intergenic	Intergenic	29514	NM_001166504	131		NM_000673	ENSG00000196344	ADH7	ADH4	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	protein-coding
2857	chr1	11282471	11282830	+	0	NA	intron (NM_001330350, intron 1 of 1)	AluSp|SINE|Alu	9452	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
79868	chr16	1505101	1505300	+	0	NA	intron (NM_016111, intron 15 of 20)	CpG	11840	NM_016111	9894		NM_016111	ENSG00000100726	TELO2	CLK2|TEL2|YHFS	telomere maintenance 2	protein-coding
119851	chr19	41422751	41423250	+	0	NA	exon (NM_000709, exon 8 of 9)	exon (NM_000709, exon 8 of 9)	4993	NM_001385648	374907		NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding
129804	chr2	71452701	71452980	+	0	NA	promoter-TSS (NM_001130977)	promoter-TSS (NM_001130977)	-721	NM_001130979	8291		NM_003494	ENSG00000135636	DYSF	FER1L1|LGMD2B|LGMDR2|MMD1	dysferlin	protein-coding
178542	chr4	151096001	151096400	+	0	NA	Intergenic	Intergenic	-3373	NM_001267699	6189		NM_001006	ENSG00000145425	RPS3A	FTE1|MFTL|S3A|eS1	ribosomal protein S3A	protein-coding
65061	chr14	39342751	39343100	+	0	NA	intron (NM_203354, intron 20 of 23)	L1ME3Cz|LINE|L1	75540	NM_001354144	4253		NM_005930	ENSG00000150527	MIA2	CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI	MIA SH3 domain ER export factor 2	protein-coding
61069	chr13	48308321	48308580	+	0	NA	intron (NM_000321, intron 2 of 26)	AluSx1|SINE|Alu	4699	NM_000321	5925		NM_000321	ENSG00000139687	RB1	OSRC|PPP1R130|RB|p105-Rb|p110-RB1|pRb|pp110	RB transcriptional corepressor 1	protein-coding
85152	chr16	46398321	46399000	+	0	NA	Intergenic	Intergenic	170437	NR_026556	124149		NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
160072	chr3	18726951	18727430	+	0	NA	Intergenic	Intergenic	-281598	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
4556	chr1	22042501	22043500	+	0	NA	Intergenic	L2a|LINE|L2	-9709	NM_001039802	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
181444	chr5	40904771	40905030	+	0	NA	Intergenic	Intergenic	-4597	NM_000587	730		NM_000587	ENSG00000112936	C7	-	complement C7	protein-coding
144470	chr20	35606071	35606550	+	0	NA	intron (NR_119376, intron 3 of 42)	intron (NR_119376, intron 3 of 42)	1252	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
37398	chr11	17203701	17204050	+	0	NA	intron (NM_002645, intron 1 of 32)	AluY|SINE|Alu	4111	NM_002645	5286		NM_002645	ENSG00000011405	PIK3C2A	CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding
19135	chr1	171540701	171541300	+	0	NA	exon (NM_015172, exon 16 of 34)	exon (NM_015172, exon 16 of 34)	55470	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
171699	chr3	197795051	197795380	+	0	NA	intron (NM_001365715, intron 1 of 20)	MLT1K|LTR|ERVL-MaLR	3961	NM_001365719	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
73654	chr15	44712501	44713200	+	0	NA	intron (NM_004048, intron 1 of 3)	AluJr|SINE|Alu	1333	NM_004048	567		NM_004048	ENSG00000166710	B2M	IMD43	beta-2-microglobulin	protein-coding
236032	chrX	55357171	55357530	+	0	NA	Intergenic	L1PA10|LINE|L1	77262	NR_130179	100421746		NR_130179	ENSG00000290748	LOC100421746	-	PAGE family member 5 pseudogene	pseudo
229380	chr9	121120271	121120630	+	0	NA	intron (NM_007018, intron 12 of 43)	L2c|LINE|L2	-1320	NR_163191	11064		NM_007018	ENSG00000119397	CNTRL	CEP1|CEP110|FAN|bA165P4.1	centriolin	protein-coding
119357	chr19	39998001	39998280	+	0	NA	intron (NM_178544, intron 2 of 6)	intron (NM_178544, intron 2 of 6)	1080	NM_001297763	339327		NM_178544	ENSG00000187187	ZNF546	ZNF49	zinc finger protein 546	protein-coding
220431	chr8	100298351	100298450	+	0	NA	intron (NM_001280539, intron 2 of 10)	intron (NM_001280539, intron 2 of 10)	3793	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
187475	chr5	142143051	142143350	+	0	NA	intron (NM_030571, intron 6 of 7)	Charlie8|DNA|hAT-Charlie	34421	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
109748	chr19	1111421	1111730	+	0	NA	exon (NM_014963, exon 24 of 32)	exon (NM_014963, exon 24 of 32)	6925	NM_001039848	2879		NM_002085	ENSG00000167468	GPX4	GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx	glutathione peroxidase 4	protein-coding
36919	chr11	10802471	10803100	+	0	NA	intron (NM_001172705, intron 11 of 21)	AluSx3|SINE|Alu	-1177	NR_004403	692223		NR_004403	ENSG00000238622	SNORD97	U97	small nucleolar RNA, C/D box 97	snoRNA
18601	chr1	165646801	165647000	+	0	NA	intron (NM_004528, intron 1 of 5)	intron (NM_004528, intron 1 of 5)	15666	NM_004528	4259		NM_004528	ENSG00000143198	MGST3	GST-3|GST-III	microsomal glutathione S-transferase 3	protein-coding
46987	chr12	39751	40150	+	0	NA	Intergenic	Intergenic	-1817	NR_026823	677784		NR_026823	ENSG00000249054	FAM138D	F379	family with sequence similarity 138 member D	ncRNA
22545	chr1	222472351	222472650	+	0	NA	Intergenic	Intergenic	75604	NM_024746	79802		NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding
238774	chrX	154359901	154360100	+	0	NA	exon (NM_001456, exon 22 of 47)	exon (NM_001456, exon 22 of 47)	14634	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
179286	chr4	177306571	177306930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3124	NM_018248	55247		NM_018248	ENSG00000109674	NEIL3	FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3	nei like DNA glycosylase 3	protein-coding
96531	chr17	40350171	40350950	+	0	NA	intron (NM_000964, intron 4 of 8)	intron (NM_000964, intron 4 of 8)	-7424	NR_110861	101929693		NR_110861	ENSG00000265666	RARA-AS1	-	RARA antisense RNA 1	ncRNA
154471	chr22	35554321	35554580	+	0	NA	TTS (NM_014310)	TTS (NM_014310)	13619	NM_014310	23551		NM_014310	ENSG00000100302	RASD2	Rhes|TEM2	RASD family member 2	protein-coding
222890	chr8	142782201	142784150	+	0	NA	Intergenic	Intergenic	3364	NM_003695	8581		NM_003695	ENSG00000167656	LY6D	E48|Ly-6D	lymphocyte antigen 6 family member D	protein-coding
1016	chr1	1860251	1861150	+	0	NA	intron (NM_001282538, intron 1 of 9)	AluSz6|SINE|Alu	30387	NM_002074	2782		NM_002074	ENSG00000078369	GNB1	HG2A|MDS|MRD42	G protein subunit beta 1	protein-coding
101773	chr17	73147601	73148350	+	0	NA	Intergenic	(CT)n|Simple_repeat|Simple_repeat	-17035	NM_001050	6752		NM_001050	ENSG00000180616	SSTR2	SST2	somatostatin receptor 2	protein-coding
129037	chr2	65031151	65031850	+	0	NA	Intergenic	Intergenic	-24916	NM_001319101	23177		NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding
107645	chr18	48974051	48974600	+	0	NA	Intergenic	Intergenic	-23614	NM_001190821	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
178797	chr4	153493701	153494330	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	27655	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
153107	chr22	23565301	23565900	+	0	NA	Intergenic	(CCCTCT)n|Simple_repeat|Simple_repeat	14690	NM_020070	3543		NM_020070	ENSG00000128322	IGLL1	14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2	immunoglobulin lambda like polypeptide 1	protein-coding
136939	chr2	190180271	190181200	+	0	NA	promoter-TSS (NM_001042519)	promoter-TSS (NM_001042519)	-128	NM_032321	84281		NM_032321	ENSG00000187699	C2orf88	smAKAP	chromosome 2 open reading frame 88	protein-coding
206937	chr7	38236571	38237000	+	0	NA	Intergenic	Intergenic	36862	NM_001003799	445347		NM_001003799	ENSG00000289746	TARP	CD3G	TCR gamma alternate reading frame protein	protein-coding
121518	chr19	47220151	47220450	+	0	NA	TTS (NM_001127242)	TTS (NM_001127242)	-6642	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
14558	chr1	144930051	144930480	+	0	NA	intron (NM_001385228, intron 3 of 8)	intron (NM_001385228, intron 3 of 8)	-164031	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
114577	chr19	12922301	12922900	+	0	NA	3' UTR (NM_004461, exon 13 of 13)	3' UTR (NM_004461, exon 13 of 13)	2280	NR_049880	100847016		NR_049880	ENSG00000266721	MIR5695	-	microRNA 5695	ncRNA
97568	chr17	44090251	44090550	+	0	NA	intron (NM_001382393, intron 11 of 26)	AluSx1|SINE|Alu	19489	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
228924	chr9	113155171	113155430	+	0	NA	intron (NM_001860, intron 1 of 3)	MIR|SINE|MIR	4293	NM_001860	1318		NM_001860	ENSG00000136867	SLC31A2	COPT2|CTR2|hCTR2	solute carrier family 31 member 2	protein-coding
69925	chr14	99524271	99524430	+	0	NA	intron (NM_001144995, intron 2 of 5)	intron (NM_001144995, intron 2 of 5)	42941	NM_001099402	8812		NM_003858	ENSG00000090061	CCNK	CPR4|IDDHDF	cyclin K	protein-coding
70465	chr14	102066071	102066500	+	0	NA	Intergenic	Intergenic	20759	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
229234	chr9	114927901	114928480	+	0	NA	intron (NM_001244, intron 1 of 3)	intron (NM_001244, intron 1 of 3)	2401	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
168399	chr3	142180721	142181050	+	0	NA	intron (NM_001039547, intron 11 of 15)	L1MD2|LINE|L1	-31341	NM_001375775	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
166881	chr3	123979571	123980250	+	0	NA	non-coding (NR_133919, exon 2 of 2)	non-coding (NR_133919, exon 2 of 2)	11442	NM_017578	54763		NM_017578	ENSG00000065371	ROPN1	CT91|ODF6|RHPNAP1|ROPN1A|ropporin	rhophilin associated tail protein 1	protein-coding
50617	chr12	48684701	48685100	+	0	NA	Intergenic	AluSx|SINE|Alu	-2662	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
101674	chr17	68349071	68349900	+	0	NA	intron (NM_001352901, intron 4 of 11)	intron (NM_001352901, intron 4 of 11)	57350	NM_001352902	22901		NM_014960	ENSG00000141337	ARSG	USH4	arylsulfatase G	protein-coding
132221	chr2	102253101	102253830	+	0	NA	Intergenic	Intergenic	-58037	NM_001282408	9173		NM_003856	ENSG00000115602	IL1RL1	DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1	interleukin 1 receptor like 1	protein-coding
86280	chr16	58602301	58602600	+	0	NA	intron (NM_206999, intron 1 of 30)	AluJo|SINE|Alu	27376	NM_016284	23019		NM_016284	ENSG00000125107	CNOT1	AD-005|CDC39|HPE12|NOT1|NOT1H|VIBOS	CCR4-NOT transcription complex subunit 1	protein-coding
97739	chr17	44384871	44386200	+	0	NA	intron (NM_000419, intron 4 of 29)	CpG	4114	NM_000419	3674		NM_000419	ENSG00000005961	ITGA2B	BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GT1|GTA|HPA3|PPP1R93	integrin subunit alpha 2b	protein-coding
185726	chr5	132067751	132068250	+	0	NA	Intergenic	Intergenic	-5789	NM_000758	1437		NM_000758	ENSG00000164400	CSF2	CSF|GMCSF	colony stimulating factor 2	protein-coding
7943	chr1	37548301	37548700	+	0	NA	intron (NM_024700, intron 2 of 3)	AluSx1|SINE|Alu	5793	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
2387	chr1	9428571	9429850	+	0	NA	promoter-TSS (NR_104623)	promoter-TSS (NR_104623)	-214	NR_104622	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
128588	chr2	60923651	60923950	+	0	NA	3' UTR (NM_002908, exon 11 of 11)	3' UTR (NM_002908, exon 11 of 11)	42226	NM_001291746	5966		NM_002908	ENSG00000162924	REL	C-Rel|HIVEN86A|IMD92	REL proto-oncogene, NF-kB subunit	protein-coding
133388	chr2	118188171	118188750	+	0	NA	Intergenic	Intergenic	-2074	NR_144530	100506797		NR_144530	ENSG00000226856	THORLNC	THOR	testis associated oncogenic lncRNA	ncRNA
91145	chr17	3754661	3756180	+	0	NA	intron (NM_002208, intron 11 of 30)	intron (NM_002208, intron 11 of 30)	31517	NM_031965	83903		NM_031965	ENSG00000177602	HASPIN	GSG2	histone H3 associated protein kinase	protein-coding
238673	chrX	154036271	154037180	+	0	NA	intron (NM_001110792, intron 1 of 2)	intron (NM_001110792, intron 1 of 2)	-16736	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
125503	chr2	12704971	12705430	+	0	NA	Intergenic	Intergenic	-11672	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
140748	chr2	234485601	234485830	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	11334	NM_005737	10123		NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding
82325	chr16	15729801	15730400	+	0	NA	intron (NM_022844, intron 27 of 41).2	MSTA|LTR|ERVL-MaLR	79855	NM_017668	54820		NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding
56396	chr12	113205271	113205430	+	0	NA	intron (NM_001330452, intron 2 of 4)	AluSx|SINE|Alu	15744	NM_001330452	115811		NM_138451	ENSG00000166578	IQCD	4933433C09Rik|CFAP84|DRC10	IQ motif containing D	protein-coding
82473	chr16	17211801	17212030	+	0	NA	intron (NM_022166, intron 3 of 11)	MER20|DNA|hAT-Charlie	77411	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
218621	chr8	56079121	56079830	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	4883	NR_149110	105375847		NR_149110	ENSG00000253603	CERNA3	CTA	competing endogenous lncRNA 3 for miR-645	ncRNA
239445	chrY	56709371	56709530	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-244805	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
70490	chr14	102089821	102090080	+	0	NA	intron (NM_001017963, intron 2 of 11)	L2b|LINE|L2	-2906	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
187562	chr5	142786501	142787320	+	0	NA	intron (NM_001349547, intron 1 of 21)	AluSg|SINE|Alu	15683	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
112273	chr19	5806671	5806830	+	0	NA	intron (NM_004558, intron 1 of 2)	intron (NM_004558, intron 1 of 2)	1683	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
129210	chr2	68222271	68222730	+	0	NA	intron (NM_000945, intron 1 of 5)	MLT2B1|LTR|ERVL	30032	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
11818	chr1	92839521	92840180	+	0	NA	promoter-TSS (NR_002444)	promoter-TSS (NR_002444)	-869	NR_002444	26782		NR_002444	ENSG00000207523	SNORA66	RNU66|U66	small nucleolar RNA, H/ACA box 66	snoRNA
168093	chr3	138327651	138328430	+	0	NA	intron (NM_178130, intron 2 of 11)	MIRc|SINE|MIR	1811	NM_001349025	347736		NM_178130	ENSG00000181322	NME9	NM23-H9|NXL2|TXL-2|TXL2|TXNDC6	NME/NM23 family member 9	protein-coding
228199	chr9	97714421	97714980	+	0	NA	intron (NR_147055, intron 8 of 10)	intron (NR_147055, intron 8 of 10)	-17291	NR_149094	7507		NM_000380	ENSG00000136936	XPA	XP1|XPAC	XPA, DNA damage recognition and repair factor	protein-coding
6397	chr1	27941671	27942030	+	0	NA	intron (NM_001304579, intron 1 of 7)	intron (NM_001304579, intron 1 of 7)	6850	NM_001304579	27293		NM_014474	ENSG00000130768	SMPDL3B	ASML3B	sphingomyelin phosphodiesterase acid like 3B	protein-coding
199117	chr6	111689301	111689600	+	0	NA	intron (NM_001370529, intron 10 of 11)	L1ME3|LINE|L1	69681	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
155526	chr22	38696451	38697050	+	0	NA	intron (NM_014876, intron 2 of 4)	intron (NM_014876, intron 2 of 4)	4193	NM_001360236	9929		NM_014876	ENSG00000100221	JOSD1	dJ508I15.2	Josephin domain containing 1	protein-coding
56851	chr12	120256151	120256550	+	0	NA	intron (NM_001080855, intron 1 of 11)	AluJr4|SINE|Alu	-6187	NM_025157	5829		NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding
69717	chr14	98204671	98205030	+	0	NA	Intergenic	Intergenic	-226726	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
40519	chr11	64285201	64286930	+	0	NA	non-coding (NR_165397, exon 1 of 6)	non-coding (NR_165397, exon 1 of 6)	217	NM_001378089	56834		NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding
30587	chr10	80145751	80145850	+	0	NA	TTS (NM_001331125)	TTS (NM_001331125)	13070	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
157762	chr22	46707351	46707450	+	0	NA	intron (NM_022766, intron 6 of 12)	intron (NM_022766, intron 6 of 12)	30852	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
147492	chr20	59161151	59161330	+	0	NA	intron (NM_001384354, intron 3 of 7)	L1MB7|LINE|L1	-2581	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
114320	chr19	12000321	12001050	+	0	NA	intron (NR_134929, intron 1 of 2)	intron (NR_134929, intron 1 of 2)	13068	NR_134928	101928464		NR_134927	ENSG00000219665	ZNF433-AS1	-	ZNF433 and ZNF878 antisense RNA 1	ncRNA
173646	chr4	13537151	13537450	+	0	NA	Intergenic	Intergenic	-5883	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
237991	chrX	134548421	134548700	+	0	NA	Intergenic	Intergenic	-1464	NR_038998	100506757		NR_038998	ENSG00000227060	LINC00629	LINC00629A|LINC00629B|LINC00629C|LINC00629D	long intergenic non-protein coding RNA 629	ncRNA
202041	chr6	153099701	153099930	+	0	NA	intron (NM_012419, intron 1 of 4)	MIRb|SINE|MIR	31467	NM_012419	26575		NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G protein signaling 17	protein-coding
228042	chr9	96013951	96015000	+	0	NA	non-coding (NR_164677, exon 20 of 20)	non-coding (NR_164677, exon 20 of 20)	7336	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
56158	chr12	111399371	111399950	+	0	NA	Intergenic	AluSc8|SINE|Alu	-6263	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
150446	chr21	42462601	42463000	+	0	NA	Intergenic	Tigger18a|DNA|TcMar-Tigger	33424	NM_001286506	89765		NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head component 1	protein-coding
112540	chr19	6528901	6529550	+	0	NA	Intergenic	Intergenic	-1801	NM_003811	8744		NM_003811	ENSG00000125657	TNFSF9	4-1BB-L|CD137L|TNLG5A	TNF superfamily member 9	protein-coding
73333	chr15	41967821	41968180	+	0	NA	intron (NM_139265, intron 1 of 5)	L3|LINE|CR1	4557	NM_139265	30844		NM_139265	ENSG00000103966	EHD4	PAST4	EH domain containing 4	protein-coding
72853	chr15	40251851	40251950	+	0	NA	non-coding (NR_168270, exon 2 of 2)	non-coding (NR_168270, exon 2 of 2)	1059	NR_168270	644809		NM_001039905	ENSG00000176753	PAK6-AS1	C15orf56	PAK6 antisense RNA 1	ncRNA
15119	chr1	148666821	148667080	+	0	NA	intron (NM_001364007, intron 1 of 4)	Tigger1a_Art|DNA|TcMar-Tigger	12796	NM_001364007	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
11111	chr1	86390621	86391250	+	0	NA	intron (NM_020729, intron 1 of 17)	L1PB1|LINE|L1	5126	NM_001366784	57489		NM_020729	ENSG00000122417	ODF2L	-	outer dense fiber of sperm tails 2 like	protein-coding
90642	chr17	1663401	1663680	+	0	NA	intron (NM_006445, intron 24 of 42)	AluSx4|SINE|Alu	-13674	NM_031430	83547		NM_031430	ENSG00000167705	RILP	PP10141	Rab interacting lysosomal protein	protein-coding
29825	chr10	72322051	72323080	+	0	NA	Intergenic	Intergenic	32354	NR_157570	54788		NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding
55087	chr12	96985371	96986150	+	0	NA	Intergenic	Intergenic	78294	NM_001135175	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
59176	chr13	22017271	22017730	+	0	NA	Intergenic	Tigger4|DNA|TcMar-Tigger	-139340	NR_047040	100874182		NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
169180	chr3	156688721	156689200	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	12296	NM_001184718	25976		NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
89049	chr16	88437101	88438080	+	0	NA	exon (NM_001367624, exon 3 of 3)	exon (NM_001367624, exon 3 of 3)	-15690	NM_153813	161882		NM_153813	ENSG00000179588	ZFPM1	FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A	zinc finger protein, FOG family member 1	protein-coding
84187	chr16	29843371	29843930	+	0	NA	intron (NM_017458, intron 10 of 14)	AluSx1|SINE|Alu	13135	NM_001293204	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
37156	chr11	13668131	13669700	+	0	NA	intron (NM_032228, intron 1 of 11)	CpG	247	NM_032228	84188		NM_032228	ENSG00000197601	FAR1	CSPSD|MLSTD2|PFCRD|SDR10E1	fatty acyl-CoA reductase 1	protein-coding
71564	chr14	106378201	106378580	+	0	NA	Intergenic	Intergenic	90716	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
25194	chr10	5659801	5660200	+	0	NA	intron (NR_024581, intron 1 of 4)	intron (NR_024581, intron 1 of 4)	6595	NR_024581	79754		NM_024701	ENSG00000196372	ASB13	-	ankyrin repeat and SOCS box containing 13	protein-coding
145849	chr20	45886701	45887100	+	0	NA	exon (NM_080608, exon 2 of 2)	exon (NM_080608, exon 2 of 2)	722	NM_080608	128497		NM_080608	ENSG00000149634	SPATA25	C20orf165|TSG23|dJ337O18.8	spermatogenesis associated 25	protein-coding
196163	chr6	42560401	42560800	+	0	NA	Intergenic	HAL1|LINE|L1	-3422	NM_015255	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
173990	chr4	26299321	26299950	+	0	NA	intron (NM_001374401, intron 1 of 11)	intron (NM_001374401, intron 1 of 11)	-20111	NM_005349	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
26577	chr10	21953601	21953950	+	0	NA	intron (NM_022365, intron 1 of 11)	intron (NM_022365, intron 1 of 11)	49955	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
137141	chr2	191053151	191053780	+	0	NA	intron (NM_003151, intron 14 of 23)	intron (NM_003151, intron 14 of 23)	31939	NR_136318	105373805		NR_136318	ENSG00000231858	STAT4-AS1	-	STAT4 antisense RNA 1	ncRNA
230692	chr9	128731371	128731530	+	0	NA	intron (NM_001375958, intron 15 of 15)	intron (NM_001375958, intron 15 of 15)	6988	NR_046240	100506100		NR_046240	ENSG00000223478	ZDHHC12-DT	-	ZDHHC12 divergent transcript	ncRNA
175161	chr4	55635901	55636380	+	0	NA	exon (NM_001292045, exon 1 of 9)	exon (NM_001292045, exon 1 of 9)	158	NM_006681	10874		NM_006681	ENSG00000109255	NMU	-	neuromedin U	protein-coding
62412	chr13	99294101	99294500	+	0	NA	TTS (NM_004951)	TTS (NM_004951)	13099	NM_004951	1880		NM_004951	ENSG00000169508	GPR183	EBI2|hEBI2	G protein-coupled receptor 183	protein-coding
106278	chr18	12657401	12658830	+	0	NA	promoter-TSS (NM_020148)	promoter-TSS (NM_020148)	-8	NM_020148	56907		NM_020148	ENSG00000134278	SPIRE1	Spir-1	spire type actin nucleation factor 1	protein-coding
128949	chr2	64611571	64611930	+	0	NA	intron (NR_034023, intron 1 of 3)	L2c|LINE|L2	4438	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
142447	chr20	3987921	3988380	+	0	NA	intron (NM_001134338, intron 1 of 6)	AluJb|SINE|Alu	27408	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
233218	chr9	137231771	137231930	+	0	NA	intron (NM_080877, intron 2 of 12)	intron (NM_080877, intron 2 of 12)	917	NM_080877	142680		NM_080877	ENSG00000198569	SLC34A3	HHRH|NPT2C|NPTIIc	solute carrier family 34 member 3	protein-coding
20646	chr1	200037871	200038230	+	0	NA	intron (NM_003822, intron 1 of 6)	intron (NM_003822, intron 1 of 6)	-4775	NM_001276464	2494		NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding
136751	chr2	181307601	181307980	+	0	NA	intron (NR_130784, intron 3 of 4)	AluSx|SINE|Alu	-2138	NR_039637	100616213		NR_039637	ENSG00000266705	MIR4437	mir-4437	microRNA 4437	ncRNA
57692	chr12	122847471	122848730	+	0	NA	intron (NM_001303099, intron 2 of 17)	intron (NM_001303099, intron 2 of 17)	12643	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
116107	chr19	17299951	17300450	+	0	NA	intron (NM_024527, intron 2 of 4)	AluY|SINE|Alu	-2665	NM_001382342	64981		NM_023937	ENSG00000130312	MRPL34	L34mt|bL34m	mitochondrial ribosomal protein L34	protein-coding
1978	chr1	6600701	6601800	+	0	NA	intron (NM_014851, intron 1 of 3)	intron (NM_014851, intron 1 of 3)	1619	NM_001324309	9903		NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding
76356	chr15	74544701	74544900	+	0	NA	intron (NM_006465, intron 2 of 8)	AluSc8|SINE|Alu	3580	NM_006465	10620		NM_006465	ENSG00000179361	ARID3B	BDP|DRIL2	AT-rich interaction domain 3B	protein-coding
133626	chr2	126685671	126686030	+	0	NA	5' UTR (NM_001256584, exon 2 of 5)	5' UTR (NM_001256584, exon 2 of 5)	29692	NM_002101	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
9527	chr1	51461751	51462050	+	0	NA	intron (NM_001981, intron 7 of 24)	MIRb|SINE|MIR	-39805	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
155722	chr22	39128601	39129200	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	23780	NM_001346744	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
68096	chr14	75295601	75296950	+	0	NA	non-coding (NR_038421, exon 3 of 3)	non-coding (NR_038421, exon 3 of 3)	1871	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
178779	chr4	153464171	153464330	+	0	NA	Intergenic	Intergenic	-2096	NM_015196	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
233120	chr9	137139001	137140080	+	0	NA	exon (NM_021569, exon 1 of 19)	exon (NM_021569, exon 1 of 19)	386	NM_000832	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
50450	chr12	47721101	47721930	+	0	NA	intron (NM_001172439, intron 1 of 9)	intron (NM_001172439, intron 1 of 9)	3975	NM_006025	8909		NM_006025	ENSG00000111405	ENDOU	P11|PP11|PRSS26	endonuclease, poly(U) specific	protein-coding
7414	chr1	32953771	32954400	+	0	NA	intron (NM_001127361, intron 1 of 8)	AluSq2|SINE|Alu	10724	NM_001300826	127544		NM_153341	ENSG00000116514	RNF19B	IBRDC3|NKLAM	ring finger protein 19B	protein-coding
168377	chr3	141912921	141913550	+	0	NA	intron (NM_001679, intron 3 of 6)	intron (NM_001679, intron 3 of 6)	36592	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
152284	chr22	20302251	20302650	+	0	NA	Intergenic	AluJr|SINE|Alu	17610	NM_033257	85359		NM_033257	ENSG00000128185	DGCR6L	DGCR6	DiGeorge syndrome critical region gene 6 like	protein-coding
157566	chr22	45903351	45903700	+	0	NA	Intergenic	Intergenic	73637	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
16183	chr1	153799571	153799730	+	0	NA	Intergenic	Intergenic	5703	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
3590	chr1	16225651	16226100	+	0	NA	Intergenic	Intergenic	11308	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
102480	chr17	75737421	75738080	+	0	NA	intron (NM_001005619, intron 17 of 38)	intron (NM_001005619, intron 17 of 38)	13054	NM_001005619	3691		NM_000213	ENSG00000132470	ITGB4	CD104|GP150|JEB5A|JEB5B	integrin subunit beta 4	protein-coding
161938	chr3	46107571	46108130	+	0	NA	Intergenic	Intergenic	-22006	NM_001381860	2829		NM_005283	ENSG00000173578	XCR1	CCXCR1|GPR5	X-C motif chemokine receptor 1	protein-coding
126986	chr2	36618301	36618550	+	0	NA	Intergenic	Intergenic	-20257	NM_001042548	9637		NM_005102	ENSG00000171055	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2	protein-coding
107308	chr18	44866051	44866350	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	103966	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
22458	chr1	221517001	221517200	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-180804	NR_024236	400804		NR_024236	ENSG00000234754	LINC02817	C1orf140	long intergenic non-protein coding RNA 2817	ncRNA
79378	chr16	647721	648400	+	0	NA	TTS (NR_135177)	TTS (NR_135177)	1253	NR_135177	105371038		NR_135177		LOC105371038	-	uncharacterized LOC105371038	ncRNA
114599	chr19	12951701	12951900	+	0	NA	intron (NM_001270363, intron 7 of 7)	L2b|LINE|L2	5423	NM_052850	90480		NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1|mL64	GADD45G interacting protein 1	protein-coding
41885	chr11	67248301	67249080	+	0	NA	intron (NM_012308, intron 16 of 20)	intron (NM_012308, intron 16 of 20)	8676	NM_001256405	22992		NM_012308	ENSG00000173120	KDM2A	CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA	lysine demethylase 2A	protein-coding
576	chr1	1270821	1271350	+	0	NA	intron (NM_194458, intron 1 of 6)	intron (NM_194458, intron 1 of 6)	2769	NM_194315	118424		NM_058167	ENSG00000160087	UBE2J2	NCUBE-2|NCUBE2|PRO2121|UBC6	ubiquitin conjugating enzyme E2 J2	protein-coding
154519	chr22	36028271	36029630	+	0	NA	promoter-TSS (NM_001082578)	promoter-TSS (NM_001082578)	-126	NM_001082579	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
108693	chr18	77052151	77053650	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-35845	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
124824	chr2	7696671	7697030	+	0	NA	Intergenic	LTR7|LTR|ERV1	202805	NR_110256	101929551		NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA
231694	chr9	131714471	131714630	+	0	NA	intron (NM_001377935, intron 1 of 26)	intron (NM_001377935, intron 1 of 26)	-4708	NM_198679	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
34613	chr10	133276421	133277410	+	0	NA	promoter-TSS (NM_001164489)	promoter-TSS (NM_001164489)	-47	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
235880	chrX	51891801	51892230	+	0	NA	intron (NM_001005332, intron 1 of 12)	intron (NM_001005332, intron 1 of 12)	-1608	NM_001005333	9500		NM_006986	ENSG00000179222	MAGED1	DLXIN-1|NRAGE	MAGE family member D1	protein-coding
187798	chr5	146291201	146291780	+	0	NA	Intergenic	Intergenic	-47349	NM_002700	5459		NM_002700	ENSG00000091010	POU4F3	BRN3C|DFNA15|DFNA42|DFNA52	POU class 4 homeobox 3	protein-coding
61575	chr13	71866121	71866630	+	0	NA	exon (NM_004392, exon 1 of 7)	exon (NM_004392, exon 1 of 7)	817	NM_004392	1602		NM_004392	ENSG00000276644	DACH1	DACH	dachshund family transcription factor 1	protein-coding
216735	chr8	22450471	22450700	+	0	NA	intron (NM_005605, intron 1 of 13)	intron (NM_005605, intron 1 of 13)	9507	NM_005605	5533		NM_005605	ENSG00000120910	PPP3CC	CALNA3|CNA3|PP2Bgamma	protein phosphatase 3 catalytic subunit gamma	protein-coding
96777	chr17	41784221	41784550	+	0	NA	intron (NM_001352776, intron 1 of 15)	intron (NM_001352776, intron 1 of 15)	1710	NM_001352777	3728		NM_002230	ENSG00000173801	JUP	CTNNG|DP3|DPIII|PDGB|PG|PKGB	junction plakoglobin	protein-coding
33863	chr10	124403451	124404150	+	0	NA	exon (NM_000274, exon 6 of 10)	exon (NM_000274, exon 6 of 10)	15123	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
88636	chr16	85633571	85633730	+	0	NA	intron (NM_001278184, intron 1 of 14)	intron (NM_001278184, intron 1 of 14)	20328	NM_014615	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
29070	chr10	67893151	67894130	+	0	NA	intron (NM_001142498, intron 3 of 7)	AluSg|SINE|Alu	2238	NM_001314049	23411		NM_012238	ENSG00000096717	SIRT1	SIR2|SIR2L1|SIR2alpha	sirtuin 1	protein-coding
12711	chr1	109500921	109501230	+	0	NA	TTS (NM_001134400)	TTS (NM_001134400)	6981	NM_182580	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
158261	chr22	50316501	50317080	+	0	NA	intron (NM_001001794, intron 5 of 19)	intron (NM_001001794, intron 5 of 19)	-9144	NM_001376869	23654		NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3|lncFAL	plexin B2	protein-coding
49453	chr12	24997071	24997430	+	0	NA	promoter-TSS (NM_001321724)	promoter-TSS (NM_001321724)	215	NM_001101339	196415		NM_001101339	ENSG00000226397	LINC02909	C12orf77	long intergenic non-protein coding RNA 2909	ncRNA
188031	chr5	149654171	149654330	+	0	NA	Intergenic	MIRb|SINE|MIR	72752	NM_001001669	389337		NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding
152330	chr22	20418101	20418850	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	19350	NM_153334	91179		NM_153334	ENSG00000244486	SCARF2	NSR1|SREC-II|SREC2|SRECRP-1|VDEGS	scavenger receptor class F member 2	protein-coding
188304	chr5	151170921	151171380	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-13371	NM_001363114	309		NM_001155	ENSG00000197043	ANXA6	ANX6|CBP68|CPB-II|p68|p70	annexin A6	protein-coding
47278	chr12	1600401	1600650	+	0	NA	Intergenic	AluJo|SINE|Alu	-5944	NM_152441	144699		NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding
28685	chr10	60732321	60734000	+	0	NA	intron (NM_001204403, intron 1 of 43)	CpG	368	NM_001204403	288		NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding
197874	chr6	89092651	89093130	+	0	NA	Intergenic	AluJb|SINE|Alu	12139	NM_006813	10957		NM_006813	ENSG00000146278	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline rich nuclear receptor coactivator 1	protein-coding
225470	chr9	35605001	35606650	+	0	NA	exon (NM_006285, exon 1 of 10)	exon (NM_006285, exon 1 of 10)	563	NM_001318230	7016		NM_006285	ENSG00000107140	TESK1	-	testis associated actin remodelling kinase 1	protein-coding
171677	chr3	197735201	197735400	+	0	NA	intron (NM_001145642, intron 1 of 20)	AluJo|SINE|Alu	1604	NM_014687	9711		NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	rubicon autophagy regulator	protein-coding
189695	chr5	176445871	176446480	+	0	NA	Intergenic	AluY|SINE|Alu	-2210	NM_014613	23197		NM_014613	ENSG00000113194	FAF2	ETEA|UBXD8|UBXN3B	Fas associated factor family member 2	protein-coding
53694	chr12	68495001	68495200	+	0	NA	Intergenic	AluJr|SINE|Alu	-43616	NR_120458	100507195		NR_120458		LINC02384	-	long intergenic non-protein coding RNA 2384	ncRNA
18309	chr1	161168501	161168930	+	0	NA	intron (NM_001365400, intron 5 of 11)	AluSz|SINE|Alu	2069	NM_001365398	5498		NM_000309	ENSG00000143224	PPOX	PPO|V290M|VP|VPCO	protoporphyrinogen oxidase	protein-coding
83946	chr16	29129601	29129800	+	0	NA	Intergenic	Intergenic	54858	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
59415	chr13	25300121	25300380	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-1375	NM_014089	9818		NM_014089	ENSG00000139496	NUP58	NUP45|NUPL1|PRO2463	nucleoporin 58	protein-coding
160147	chr3	20099501	20100250	+	0	NA	exon (NM_003884, exon 4 of 18)	exon (NM_003884, exon 4 of 18)	-37690	NR_036086	100422901		NR_036086	ENSG00000266745	MIR3135A	MIR3135|hsa-mir-3135a	microRNA 3135a	ncRNA
79667	chr16	1233521	1233780	+	0	NA	Intergenic	AluY|SINE|Alu	-3466	NM_024164	64499		NM_024164	ENSG00000197253	TPSB2	TPS2|tryptaseB|tryptaseC	tryptase beta 2	protein-coding
209086	chr7	74849271	74849700	+	0	NA	exon (NM_001368300, exon 1 of 16)	exon (NM_001368300, exon 1 of 16)	640	NM_001368300	84163		NM_173537	ENSG00000196275	GTF2IRD2	FP630|GTF2IRD2 alpha|GTF2IRD2A	GTF2I repeat domain containing 2	protein-coding
142331	chr20	3676321	3677600	+	0	NA	intron (NM_025220, intron 3 of 21)	intron (NM_025220, intron 3 of 21)	5050	NM_001282447	80332		NM_025220	ENSG00000149451	ADAM33	C20orf153|DJ964F7.1	ADAM metallopeptidase domain 33	protein-coding
142004	chr20	1503651	1504480	+	0	NA	Intergenic	L1M3c|LINE|L1	-12645	NM_001122962	284759		NM_001122962	ENSG00000196209	SIRPB2	PTPN1L|PTPNS1L3|dJ776F14.2	signal regulatory protein beta 2	protein-coding
177121	chr4	108100971	108101130	+	0	NA	intron (NM_016269, intron 3 of 11)	intron (NM_016269, intron 3 of 11)	65747	NM_001166119	51176		NM_016269	ENSG00000138795	LEF1	LEF-1|TCF10|TCF1ALPHA|TCF7L3	lymphoid enhancer binding factor 1	protein-coding
231793	chr9	132351801	132352780	+	0	NA	intron (NM_001351527, intron 2 of 25)	intron (NM_001351527, intron 2 of 25)	2566	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
236266	chrX	65986001	65986440	+	0	NA	Intergenic	Intergenic	-32650	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
129128	chr2	65266901	65267100	+	0	NA	intron (NM_005722, intron 8 of 8)	L2a|LINE|L2	39169	NM_005722	10097		NM_005722	ENSG00000138071	ACTR2	ARP2	actin related protein 2	protein-coding
191845	chr6	15244521	15246230	+	0	NA	promoter-TSS (NM_004973)	promoter-TSS (NM_004973)	-694	NM_004973	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
16728	chr1	155253021	155253600	+	0	NA	intron (NM_001267608, intron 4 of 10)	AluSq2|SINE|Alu	2173	NM_001267608	10712		NM_006589	ENSG00000160767	ENTREP3	C1orf2|COTE1|FAM189B	endosomal transmembrane epsin interactor 3	protein-coding
14445	chr1	144404001	144404700	+	0	NA	Intergenic	Intergenic	-8226	NR_104076	101954267		NR_104076	ENSG00000207205	RNVU1-15	RNU1-121|RNU1-66|RNVU1-16|vU1.15|vU1.16	RNA, variant U1 small nuclear 15	snRNA
148260	chr20	63667651	63667950	+	0	NA	intron (NM_032957, intron 8 of 34)	intron (NM_032957, intron 8 of 34)	9488	NM_001283009	51750		NM_015647	ENSG00000258366	RTEL1	C20orf41|DKCA4|DKCB5|NHL|PFBMFT3|RTEL	regulator of telomere elongation helicase 1	protein-coding
191370	chr6	7314501	7314700	+	0	NA	Intergenic	Intergenic	-1401	NM_001292008	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
5450	chr1	25612451	25613150	+	0	NA	Intergenic	AluSx|SINE|Alu	-3991	NM_020379	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
108794	chr18	77622001	77622600	+	0	NA	Intergenic	MER51A|LTR|ERV1	371427	NR_104127	101927715		NR_104127	ENSG00000265843	LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
32664	chr10	103859151	103859530	+	0	NA	Intergenic	Intergenic	-3934	NM_014631	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
181007	chr5	35835901	35836730	+	0	NA	Intergenic	Intergenic	-20576	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
4335	chr1	20493601	20494600	+	0	NA	Intergenic	Intergenic	-7890	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
4283	chr1	19790351	19790650	+	0	NA	intron (NM_001349112, intron 1 of 14)	L1PA10|LINE|L1	8849	NM_001349115	255104		NM_181719	ENSG00000162542	TMCO4	-	transmembrane and coiled-coil domains 4	protein-coding
19703	chr1	181083951	181084650	+	0	NA	Intergenic	Intergenic	-4400	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
27768	chr10	35343001	35343400	+	0	NA	intron (NM_001282852, intron 1 of 8)	AluSx|SINE|Alu	6326	NM_001282853	219771		NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding
163406	chr3	50539671	50539830	+	0	NA	Intergenic	Intergenic	27997	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
224849	chr9	27726351	27726450	+	0	NA	Intergenic	Intergenic	-152534	NM_001256054	203228		NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1	C9orf72-SMCR8 complex subunit	protein-coding
77652	chr15	85502421	85502880	+	0	NA	intron (NM_007200, intron 2 of 36)	intron (NM_007200, intron 2 of 36)	-117300	NM_001270546	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
184687	chr5	108687551	108687850	+	0	NA	Intergenic	Intergenic	40561	NR_046368	100652853		NR_046368		LINC01023	HP07349	long intergenic non-protein coding RNA 1023	ncRNA
212394	chr7	128103771	128105330	+	0	NA	Intergenic	Intergenic	22689	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
139205	chr2	219261301	219261750	+	0	NA	intron (NM_001355221, intron 1 of 3)	MLT1L|LTR|ERVL-MaLR	-6917	NM_001278552	7277		NM_006000	ENSG00000127824	TUBA4A	ALS22|H2-ALPHA|TUBA1	tubulin alpha 4a	protein-coding
35983	chr11	2864301	2864700	+	0	NA	Intergenic	Intergenic	-2931	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
11952	chr1	93877501	93877700	+	0	NA	exon (NM_014597, exon 2 of 7)	exon (NM_014597, exon 2 of 7)	1606	NM_014597	30836		NM_014597	ENSG00000067334	DNTTIP2	ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2	deoxynucleotidyltransferase terminal interacting protein 2	protein-coding
1610	chr1	3665701	3666500	+	0	NA	intron (NM_001204185, intron 1 of 12)	AluSq2|SINE|Alu	13535	NM_001204187	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
69209	chr14	92688421	92688680	+	0	NA	3' UTR (NM_001319987, exon 9 of 9)	3' UTR (NM_001319987, exon 9 of 9)	60077	NM_001363696	5641		NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding
93600	chr17	19134471	19134630	+	0	NA	intron (NM_001129778, intron 2 of 3)	intron (NM_001129778, intron 2 of 3)	6961	NM_001129778	400581		NM_001129778	ENSG00000189152	GRAPL	GRAPLDR	GRB2 related adaptor protein like	protein-coding
75740	chr15	68280651	68281000	+	0	NA	intron (NM_015322, intron 1 of 1)	intron (NM_015322, intron 1 of 1)	3080	NM_015322	10116		NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding
95006	chr17	32373371	32373530	+	0	NA	3' UTR (NM_001098507, exon 12 of 12)	3' UTR (NM_001098507, exon 12 of 12)	23293	NM_001098507	7756		NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding
176910	chr4	102806171	102806430	+	0	NA	intron (NM_003340, intron 4 of 7)	intron (NM_003340, intron 4 of 7)	19560	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
219884	chr8	85643551	85643650	+	0	NA	Intergenic	CpG	12076	NR_003594	100288527		NR_003594		REXO1L2P	-	REXO1 like 2, pseudogene	pseudo
100672	chr17	63750851	63751300	+	0	NA	intron (NM_020198, intron 12 of 12)	AluJo|SINE|Alu	-9089	NM_001165970	92335		NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk	STE20 related adaptor alpha	protein-coding
220223	chr8	96281571	96282130	+	0	NA	intron (NM_001290225, intron 2 of 10)	MIR|SINE|MIR	19948	NM_014754	9791		NM_014754	ENSG00000156471	PTDSS1	LMHD|PSS1|PSSA	phosphatidylserine synthase 1	protein-coding
74322	chr15	58438971	58439230	+	0	NA	intron (NR_120338, intron 2 of 2)	L1ME4c|LINE|L1	7109	NM_000236	3990		NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
98023	chr17	45403101	45403300	+	0	NA	intron (NR_169601, intron 11 of 20)	intron (NR_169601, intron 11 of 20)	7186	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
220347	chr8	99372151	99372250	+	0	NA	intron (NM_152564, intron 19 of 61)	AluYe5|SINE|Alu	164530	NR_030329	693184		NR_030329	ENSG00000207804	MIR599	MIRN599|hsa-mir-599	microRNA 599	ncRNA
27539	chr10	32324921	32325350	+	0	NA	intron (NR_168508, intron 1 of 12)	intron (NR_168508, intron 1 of 12)	22023	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
60474	chr13	41159351	41159450	+	0	NA	intron (NR_120423, intron 2 of 3)	MER21-int|LTR|ERVL	26472	NR_120423	101929140		NR_120423	ENSG00000278390	KBTBD6-DT	-	KBTBD6 divergent transcript	ncRNA
191527	chr6	11379151	11379450	+	0	NA	intron (NR_073131, intron 1 of 9)	intron (NR_073131, intron 1 of 9)	3048	NM_001142393	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
94411	chr17	29005621	29006200	+	0	NA	5' UTR (NM_001098635, exon 1 of 17)	5' UTR (NM_001098635, exon 1 of 17)	123	NM_178860	124925		NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
236298	chrX	68217351	68217450	+	0	NA	intron (NM_002547, intron 6 of 24)	L1PA2|LINE|L1	216095	NM_002547	4983		NM_002547	ENSG00000079482	OPHN1	ARHGAP41|MRX60|MRXSBL|OPN1	oligophrenin 1	protein-coding
161074	chr3	38087201	38088350	+	0	NA	intron (NM_001321153, intron 9 of 36)	intron (NM_001321153, intron 9 of 36)	48567	NM_007335	9940		NM_007335	ENSG00000008226	DLEC1	CFAP81|DLC-1|DLC1|F56|FAP81	DLEC1 cilia and flagella associated protein	protein-coding
194258	chr6	32579071	32579580	+	0	NA	intron (NM_002124, intron 5 of 5)	intron (NM_002124, intron 5 of 5)	10511	NM_002124	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
228177	chr9	97411721	97413400	+	0	NA	intron (NM_001302884, intron 1 of 15)	CpG	464	NM_001302884	23424		NM_014290	ENSG00000196116	TDRD7	CATC4|PCTAIRE2BP|TRAP	tudor domain containing 7	protein-coding
205833	chr7	24835751	24835850	+	0	NA	intron (NM_015550, intron 14 of 22)	L1PA15|LINE|L1	56821	NM_145322	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
55439	chr12	104564971	104565330	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	-26483	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
51431	chr12	52026951	52027130	+	0	NA	intron (NM_001202233, intron 1 of 7)	intron (NM_001202233, intron 1 of 7)	4208	NM_001202233	3164		NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding
180442	chr5	10563151	10565800	+	0	NA	exon (NM_001164440, exon 1 of 4)	exon (NM_001164440, exon 1 of 4)	405	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
107971	chr18	58541401	58542450	+	0	NA	intron (NM_052947, intron 4 of 12)	intron (NM_052947, intron 4 of 12)	-58695	NR_132963	106635543		NR_132963		SNORA108	-	small nucleolar RNA, H/ACA box 108	snoRNA
52893	chr12	57209901	57210450	+	0	NA	intron (NM_002332, intron 81 of 88)	intron (NM_002332, intron 81 of 88)	-6619	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
31466	chr10	96395701	96396650	+	0	NA	intron (NM_012465, intron 11 of 20)	intron (NM_012465, intron 11 of 20)	-36810	NM_001284321	93377		NM_033207	ENSG00000197430	OPALIN	HTMP10|TMEM10|TMP10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding
76198	chr15	73630771	73631330	+	0	NA	intron (NM_001161363, intron 1 of 8)	intron (NM_001161363, intron 1 of 8)	2339	NM_012428	27020		NM_012428	ENSG00000156642	NPTN	GP55|GP65|SDFR1|SDR1|np55|np65	neuroplastin	protein-coding
168520	chr3	143957571	143957800	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-14113	NM_001363944	205428		NM_173552	ENSG00000181744	DIPK2A	C3orf58|DIA1|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding
193738	chr6	31260851	31260950	+	0	NA	Intergenic	AluJr4|SINE|Alu	11192	NM_002117	3107		NM_002117	ENSG00000204525	HLA-C	D6S204|HLA-JY3|HLAC|HLC-C|MHC|PSORS1	major histocompatibility complex, class I, C	protein-coding
52922	chr12	57240001	57241960	+	0	NA	promoter-TSS (NM_020142)	promoter-TSS (NM_020142)	-288	NM_020142	56901		NM_020142	ENSG00000185633	NDUFA4L2	COXFA4L2|MISTRH|NUOMS	NDUFA4 mitochondrial complex associated like 2	protein-coding
157598	chr22	46009871	46010030	+	0	NA	non-coding (NR_027240, exon 1 of 1)	non-coding (NR_027240, exon 1 of 1)	3334	NR_027240	730668		NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo
117518	chr19	20166671	20168000	+	0	NA	exon (NM_052852, exon 1 of 4)	exon (NM_052852, exon 1 of 4)	121	NM_052852	90649		NM_052852	ENSG00000256229	ZNF486	KRBO2	zinc finger protein 486	protein-coding
216869	chr8	22626071	22627230	+	0	NA	intron (NR_156436, intron 6 of 9)	(GCAGGCA)n|Simple_repeat|Simple_repeat	15559	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
195002	chr6	35402451	35402950	+	0	NA	intron (NM_001171818, intron 3 of 8)	intron (NM_001171818, intron 3 of 8)	-49638	NM_021922	2178		NM_021922	ENSG00000112039	FANCE	FACE|FAE	FA complementation group E	protein-coding
167045	chr3	126671601	126671800	+	0	NA	intron (NR_034158, intron 4 of 4)	MLT1F1|LTR|ERVL-MaLR	9619	NR_034158	255330		NM_174935	ENSG00000293201	NUP210P1	C3orf46	nucleoporin 210 pseudogene 1	pseudo
149672	chr21	33605701	33606330	+	0	NA	intron (NM_145858, intron 6 of 12)	intron (NM_145858, intron 6 of 12)	-17331	NM_017613	29980		NM_017613	ENSG00000159147	DONSON	B17|C21orf60|MIMIS|MISSLA	DNA replication fork stabilization factor DONSON	protein-coding
26731	chr10	22681271	22682900	+	0	NA	intron (NM_005028, intron 1 of 9)	MER58B|DNA|hAT-Charlie	32023	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
9825	chr1	53986401	53986680	+	0	NA	Intergenic	AluSx1|SINE|Alu	31646	NM_001010978	388633		NM_001010978	ENSG00000203985	LDLRAD1	-	low density lipoprotein receptor class A domain containing 1	protein-coding
185522	chr5	131332851	131333150	+	0	NA	intron (NM_001375633, intron 2 of 5)	L1PA4|LINE|L1	68947	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
132433	chr2	105834071	105834230	+	0	NA	intron (NM_001004722, intron 2 of 3)	L1MA5|LINE|L1	-17697	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
25002	chr10	3196101	3196700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-23559	NM_001242307	10531		NM_014889	ENSG00000107959	PITRM1	MP1|PreP|SCAR30	pitrilysin metallopeptidase 1	protein-coding
184719	chr5	109407071	109407230	+	0	NA	intron (NM_014819, intron 1 of 9)	L1ME1|LINE|L1	2824	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
76891	chr15	77988201	77988600	+	0	NA	Intergenic	Intergenic	5825	NR_026998	91450		NR_026998		LOC91450	-	uncharacterized LOC91450	ncRNA
54583	chr12	92403551	92404680	+	0	NA	Intergenic	Intergenic	-17416	NR_027932	574028		NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	ncRNA
76405	chr15	74695171	74696530	+	0	NA	intron (NM_001142443, intron 1 of 9)	CpG	174	NM_001142444	80153		NM_025083	ENSG00000179151	EDC3	LSM16|MRT50|YJDC|YJEFN2|hYjeF_N2-15q23	enhancer of mRNA decapping 3	protein-coding
92745	chr17	14338771	14339130	+	0	NA	intron (NM_006041, intron 1 of 1)	intron (NM_006041, intron 1 of 1)	35210	NR_026880	84815		NM_032729	ENSG00000266709	MGC12916	-	uncharacterized protein MGC12916	ncRNA
30249	chr10	75109951	75110330	+	0	NA	promoter-TSS (NM_001320842)	promoter-TSS (NM_001320842)	-928	NM_001320843	51207		NM_016364	ENSG00000079393	DUSP13B	DUSP13|MDSP|SKRP4|TMDP	dual specificity phosphatase 13B	protein-coding
214188	chr7	148262471	148263050	+	0	NA	intron (NM_014141, intron 19 of 22)	MLT1D|LTR|ERVL-MaLR	-328006	NM_145304	202865		NM_145304	ENSG00000170279	C7orf33	-	chromosome 7 open reading frame 33	protein-coding
172241	chr4	1349621	1350030	+	0	NA	exon (NM_020894, exon 3 of 14)	exon (NM_020894, exon 3 of 14)	2269	NM_001317935	57654		NM_020894	ENSG00000163945	UVSSA	KIAA1530|UVSS3	UV stimulated scaffold protein A	protein-coding
187766	chr5	145743351	145744130	+	0	NA	Intergenic	L1PA8A|LINE|L1	91602	NM_182960	153768		NM_138492	ENSG00000186314	PRELID2	-	PRELI domain containing 2	protein-coding
89310	chr16	88721271	88721600	+	0	NA	intron (NM_001142864, intron 38 of 50)	intron (NM_001142864, intron 38 of 50)	-5098	NR_039873	100616167		NR_039873	ENSG00000284585	MIR4722	-	microRNA 4722	ncRNA
112718	chr19	7195451	7195950	+	0	NA	intron (NM_001079817, intron 2 of 20)	L1MC4|LINE|L1	98714	NM_000208	3643		NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding
152798	chr22	21838021	21838350	+	0	NA	intron (NM_138957, intron 1 of 7)	AluSx|SINE|Alu	29460	NM_002745	5594		NM_002745	ENSG00000100030	MAPK1	ERK|ERK-2|ERK2|ERT1|MAPK2|NS13|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK	mitogen-activated protein kinase 1	protein-coding
106136	chr18	9434151	9434450	+	0	NA	Intergenic	Intergenic	-41213	NM_006788	10928		NM_006788	ENSG00000017797	RALBP1	RIP1|RLIP1|RLIP76	ralA binding protein 1	protein-coding
77917	chr15	89288951	89289050	+	0	NA	intron (NM_018193, intron 18 of 36)	intron (NM_018193, intron 18 of 36)	37810	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
142468	chr20	4150351	4150450	+	0	NA	intron (NM_175840, intron 1 of 7)	L2b|LINE|L2	1572	NM_175839	54498		NM_019025	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding
99799	chr17	51264321	51264580	+	0	NA	intron (NM_016001, intron 2 of 13)	L1ME4a|LINE|L1	3904	NM_016001	51096		NM_016001	ENSG00000011260	UTP18	CGI-48|WDR50	UTP18 small subunit processome component	protein-coding
24227	chr1	236147021	236147280	+	0	NA	intron (NM_003272, intron 1 of 6)	LTR78B|LTR|ERV1	4611	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
7749	chr1	36161701	36163280	+	0	NA	intron (NM_001286365, intron 1 of 15)	MIRb|SINE|MIR	6330	NM_001286365	55700		NM_018067	ENSG00000116871	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
16830	chr1	155655871	155656780	+	0	NA	Intergenic	HERV4_I-int|LTR|ERV1	22930	NR_132762	106633810		NR_132762		SCARNA26A	-	small Cajal body-specific RNA 26A	ncRNA
206630	chr7	35967451	35967550	+	0	NA	Intergenic	CpG	-127810	NR_108089	101928618		NR_108089	ENSG00000261184	LOC101928618	-	uncharacterized LOC101928618	ncRNA
42468	chr11	69685551	69686500	+	0	NA	Intergenic	CpG	-10672	NM_153451	220064		NM_153451	ENSG00000149716	LTO1	CIAB1|ORAOV1|TAOS1	LTO1 maturation factor of ABCE1	protein-coding
143151	chr20	23994121	23994380	+	0	NA	Intergenic	Intergenic	-5471	NM_178311	92086		NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding
93479	chr17	18900621	18901500	+	0	NA	intron (NM_001353102, intron 8 of 11)	L1MDa|LINE|L1	35591	NM_001243940	5636		NM_002767	ENSG00000141127	PRPSAP2	PAP41	phosphoribosyl pyrophosphate synthetase associated protein 2	protein-coding
42100	chr11	67576971	67577330	+	0	NA	Intergenic	Intergenic	-6662	NM_000852	2950		NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding
11617	chr1	91711971	91712630	+	0	NA	exon (NM_001195683, exon 13 of 17)	exon (NM_001195683, exon 13 of 17)	173851	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
180711	chr5	24268621	24268880	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	317402	NR_131245	439936		NR_131245	ENSG00000248874	LINC02899	C5orf17	long intergenic non-protein coding RNA 2899	ncRNA
182566	chr5	65933901	65934300	+	0	NA	intron (NM_001253697, intron 1 of 25)	AluY|SINE|Alu	7525	NM_001253697	55914		NM_018695	ENSG00000112851	ERBIN	ERBB2IP|HEL-S-78|LAP2	erbb2 interacting protein	protein-coding
187284	chr5	141563951	141565030	+	0	NA	non-coding (NR_038333, exon 3 of 3)	non-coding (NR_038333, exon 3 of 3)	6179	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
235752	chrX	48954221	48954580	+	0	NA	intron (NM_001136159, intron 1 of 8)	intron (NM_001136159, intron 1 of 8)	3207	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
153150	chr22	23773971	23774630	+	0	NA	intron (NR_133013, intron 1 of 7).2	intron (NR_133013, intron 1 of 7).2	1451	NR_133013	4320		NM_005940	ENSG00000099953	MMP11	SL-3|ST3|STMY3	matrix metallopeptidase 11	protein-coding
218508	chr8	52854871	52855030	+	0	NA	Intergenic	Intergenic	-84232	NM_005285	2831		NM_005285	ENSG00000288611	NPBWR1	GPR7	neuropeptides B and W receptor 1	protein-coding
172823	chr4	3072351	3072650	+	0	NA	intron (NR_045414, intron 1 of 2)	MLT1F2|LTR|ERVL-MaLR	2014	NR_045414	100750326		NR_045414		HTT-AS	HTT-AS1|HTTAS	HTT antisense RNA	ncRNA
163094	chr3	50105271	50105630	+	0	NA	intron (NR_036627, intron 8 of 23)	intron (NR_036627, intron 8 of 23)	-4462	NR_045388	100775107		NR_045388	ENSG00000281691	RBM5-AS1	LUST	RBM5 antisense RNA 1	ncRNA
62910	chr13	110917371	110917730	+	0	NA	Intergenic	MER41A|LTR|ERV1	-2481	NR_104587	55608		NM_017664	ENSG00000088448	ANKRD10	-	ankyrin repeat domain 10	protein-coding
215583	chr7	158847171	158848430	+	0	NA	intron (NM_001350914, intron 1 of 24)	MER4B-int|LTR|ERV1	8555	NM_001350914	55112		NM_018051	ENSG00000126870	DYNC2I1	CFAP163|DIC6|FAP163|SRPS6|SRTD8|WDR60	dynein 2 intermediate chain 1	protein-coding
9877	chr1	54317351	54317700	+	0	NA	intron (NM_145716, intron 4 of 17)	AluSx1|SINE|Alu	81082	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
101218	chr17	65587451	65587750	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-25952	NM_004655	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
17160	chr1	156205351	156205650	+	0	NA	intron (NM_001377390, intron 3 of 3)	L2a|LINE|L2	-7488	NM_001199663	100527963		NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF-1|PMF1	PMF1-BGLAP readthrough	protein-coding
68326	chr14	77580601	77581730	+	0	NA	intron (NM_004863, intron 2 of 11)	intron (NM_004863, intron 2 of 11)	35472	NM_004863	9517		NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding
144335	chr20	34990601	34990800	+	0	NA	promoter-TSS (NR_039912)	promoter-TSS (NR_039912)	-228	NR_039912	100616134		NR_039912	ENSG00000283441	MIR499B	MIR499A|hsa-mir-499b	microRNA 499b	ncRNA
119300	chr19	39829851	39830630	+	0	NA	promoter-TSS (NR_106777)	promoter-TSS (NR_106777)	-438	NR_106777	102465974		NR_106777	ENSG00000277759	MIR6719	hsa-mir-6719	microRNA 6719	ncRNA
65303	chr14	50081821	50082700	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	22783	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
181834	chr5	52914771	52915680	+	0	NA	intron (NM_181501, intron 14 of 28)	intron (NM_181501, intron 14 of 28)	-74127	NR_073107	3673		NM_002203	ENSG00000164171	ITGA2	BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2	integrin subunit alpha 2	protein-coding
29463	chr10	70494001	70494200	+	0	NA	intron (NM_014431, intron 1 of 19)	L2a|LINE|L2	15333	NM_014431	27143		NM_014431	ENSG00000107719	PALD1	KIAA1274|PALD	phosphatase domain containing paladin 1	protein-coding
17408	chr1	156643471	156644700	+	0	NA	intron (NM_198427, intron 1 of 7)	intron (NM_198427, intron 1 of 7)	1968	NM_021948	63827		NM_021948	ENSG00000132692	BCAN	BEHAB|CSPG7	brevican	protein-coding
209534	chr7	77157201	77157800	+	0	NA	intron (NM_020879, intron 1 of 18)	intron (NM_020879, intron 1 of 18)	34885	NM_020879	57639		NM_020879	ENSG00000135205	CCDC146	MBO2	coiled-coil domain containing 146	protein-coding
60732	chr13	44301071	44301600	+	0	NA	Intergenic	Intergenic	-72315	NM_001346980	387923		NM_001010897	ENSG00000151778	SERP2	C13orf21|bA269C23.1	stress associated endoplasmic reticulum protein family member 2	protein-coding
94150	chr17	28344171	28344330	+	0	NA	intron (NM_021137, intron 6 of 6)	intron (NM_021137, intron 6 of 6)	8489	NM_021137	7126		NM_021137	ENSG00000109079	TNFAIP1	B12|B61|BTBD34|EDP1|hBACURD2	TNF alpha induced protein 1	protein-coding
17195	chr1	156246651	156246750	+	0	NA	exon (NM_198406, exon 2 of 8)	exon (NM_198406, exon 2 of 8)	1356	NM_001272104	79957		NM_024897	ENSG00000160781	PAQR6	PRdelta	progestin and adipoQ receptor family member 6	protein-coding
39338	chr11	59209521	59209780	+	0	NA	3' UTR (NM_001039396, exon 1 of 1)	3' UTR (NM_001039396, exon 1 of 1)	3277	NM_001039396	219972		NM_001039396	ENSG00000197629	MPEG1	IMD77|MPG1|MPS1|Mpg-1|P-2	macrophage expressed 1	protein-coding
80355	chr16	2509551	2509650	+	0	NA	Intergenic	AluYc|SINE|Alu	-4126	NM_001198569	527		NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|EPEO3|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding
84681	chr16	30769371	30769730	+	0	NA	exon (NM_001286572, exon 17 of 20)	exon (NM_001286572, exon 17 of 20)	7228	NM_014771	9810		NM_014771	ENSG00000103549	RNF40	BRE1B|RBP95|STARING	ring finger protein 40	protein-coding
220841	chr8	102942451	102942550	+	0	NA	intron (NR_126339, intron 2 of 2)	(ATCCC)n|Simple_repeat|Simple_repeat	78229	NR_126338	100506753		NR_126338		MAILR	AZIN1-AS1|H22954|MAIL1	macrophage interferon regulatory lncRNA	ncRNA
105203	chr17	82321171	82322200	+	0	NA	3' UTR (NM_003004, exon 5 of 5)	3' UTR (NM_003004, exon 5 of 5)	-4077	NM_006137	924		NM_006137	ENSG00000173762	CD7	GP40|LEU-9|TP41|Tp40	CD7 molecule	protein-coding
171858	chr4	732921	733180	+	0	NA	intron (NM_001317836, intron 4 of 11)	intron (NM_001317836, intron 4 of 11)	27218	NM_001317836	10336		NM_006315	ENSG00000185619	PCGF3	DONG1|RNF3|RNF3A	polycomb group ring finger 3	protein-coding
187330	chr5	141646571	141646730	+	0	NA	exon (NM_033449, exon 11 of 20)	exon (NM_033449, exon 11 of 20)	4768	NM_033449	89848		NM_033449	ENSG00000197948	FCHSD1	NWK2	FCH and double SH3 domains 1	protein-coding
108288	chr18	63312821	63313800	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	6459	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
123322	chr19	53581201	53582330	+	0	NA	Intergenic	Intergenic	21732	NR_002938	284379		NR_002938	ENSG00000290755	LOC284379	-	solute carrier family 7 member 3 pseudogene	pseudo
138522	chr2	207352821	207353200	+	0	NA	Intergenic	Intergenic	-83586	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA
115815	chr19	16451671	16451830	+	0	NA	intron (NM_021235, intron 1 of 22)	AluYf1|SINE|Alu	20220	NM_001258374	58513		NM_021235	ENSG00000127527	EPS15L1	EPS15R	epidermal growth factor receptor pathway substrate 15 like 1	protein-coding
155895	chr22	39530521	39531150	+	0	NA	intron (NR_130151, intron 2 of 4)	L2a|LINE|L2	1913	NR_130151	91582		NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding
5116	chr1	24874801	24875000	+	0	NA	Intergenic	Intergenic	44516	NR_106789	102465437		NR_106789	ENSG00000278034	MIR6731	hsa-mir-6731	microRNA 6731	ncRNA
178746	chr4	153138401	153138600	+	0	NA	Intergenic	Intergenic	-13663	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
43293	chr11	76153221	76153900	+	0	NA	Intergenic	Intergenic	52942	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
233773	chrX	1418821	1419080	+	0	NA	intron (NM_001173473, intron 10 of 12).2	intron (NM_001173473, intron 10 of 12).2	18419	NR_026710	80161		NM_025091		ASMTL-AS1	ASMTL-AS|ASMTLAS|CXYorf2|NCRNA00105	ASMTL antisense RNA 1	ncRNA
219011	chr8	63196771	63196930	+	0	NA	intron (NM_001277815, intron 5 of 5)	intron (NM_001277815, intron 5 of 5)	27847	NM_001277814	253943		NM_152758	ENSG00000185728	YTHDF3	DF3	YTH N6-methyladenosine RNA binding protein F3	protein-coding
193390	chr6	30365451	30365750	+	0	NA	Intergenic	Intergenic	20444	NM_001199120	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
109510	chr19	837971	838130	+	0	NA	Intergenic	AluY|SINE|Alu	-2949	NM_002777	5657		NM_002777	ENSG00000196415	PRTN3	ACPA|AGP7|C-ANCA|CANCA|MBN|MBT|NP-4|NP4|P29|PR-3|PR3	proteinase 3	protein-coding
31280	chr10	92323001	92323400	+	0	NA	intron (NM_017824, intron 2 of 5)	FAM|SINE|Alu	32033	NM_017824	54708		NM_017824	ENSG00000198060	MARCHF5	MARCH-V|MARCH5|MITOL|RNF153	membrane associated ring-CH-type finger 5	protein-coding
2336	chr1	9202621	9203050	+	0	NA	Intergenic	Intergenic	-20497	NR_132742	106614088		NR_132742	ENSG00000228526	MIR34AHG	lnc34a	MIR34A host gene	ncRNA
106713	chr18	23460771	23460930	+	0	NA	intron (NR_145477, intron 1 of 12)	LTR86C|LTR|ERVL	7563	NR_145477	8780		NM_003831	ENSG00000101782	RIOK3	SUDD	RIO kinase 3	protein-coding
47758	chr12	6542001	6542200	+	0	NA	intron (NM_001039670, intron 8 of 9)	intron (NM_001039670, intron 8 of 9)	6836	NM_001256799	2597		NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
67649	chr14	73071001	73071400	+	0	NA	intron (NM_021239, intron 1 of 18)	AluSc|SINE|Alu	12666	NM_021239	58517		NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding
140767	chr2	234881671	234881850	+	0	NA	Intergenic	Intergenic	-70257	NM_014521	23677		NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding
110417	chr19	1961271	1961730	+	0	NA	intron (NM_001319, intron 1 of 11)	intron (NM_001319, intron 1 of 11)	-6951	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
59632	chr13	28124471	28125280	+	0	NA	Intergenic	AluSx|SINE|Alu	-13670	NM_175854	255967		NM_175854	ENSG00000152520	PAN3	-	poly(A) specific ribonuclease subunit PAN3	protein-coding
150497	chr21	42783701	42785780	+	0	NA	Intergenic	(CCACC)n|Simple_repeat|Simple_repeat	-4746	NR_135517	101928311		NR_135517	ENSG00000283051	LINC01668	-	long intergenic non-protein coding RNA 1668	ncRNA
80406	chr16	2600221	2600680	+	0	NA	3' UTR (NM_001261816, exon 12 of 12)	3' UTR (NM_001261816, exon 12 of 12)	-2934	NR_015441	652276		NR_015441	ENSG00000291228	LOC652276	-	potassium channel tetramerization domain containing 5 pseudogene	pseudo
213721	chr7	140268951	140269530	+	0	NA	Intergenic	L1MC5a|LINE|L1	91979	NR_024451	100134229		NR_024451	ENSG00000260231	KDM7A-DT	JHDM1D-AS1	KDM7A divergent transcript	ncRNA
234486	chrX	18377751	18378050	+	0	NA	Intergenic	Intergenic	-23212	NM_006089	10389		NM_006089	ENSG00000102098	SCML2	-	Scm polycomb group protein like 2	protein-coding
145439	chr20	43471021	43471600	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	13414	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
18107	chr1	160703221	160703800	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK11-int|LTR|ERVK	8312	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
70992	chr14	104719421	104719880	+	0	NA	3' UTR (NM_001031714, exon 22 of 22)	3' UTR (NM_001031714, exon 22 of 22)	-4579	NM_152328	122622		NM_152328	ENSG00000185100	ADSS1	ADSSL1|MPD5	adenylosuccinate synthase 1	protein-coding
78240	chr15	90678251	90679150	+	0	NA	intron (NR_120372, intron 2 of 3)	intron (NR_120372, intron 2 of 3)	18466	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
173697	chr4	15651671	15652500	+	0	NA	intron (NM_012161, intron 1 of 10)	L2c|LINE|L2	3272	NM_012161	26234		NM_012161	ENSG00000118564	FBXL5	FBL4|FBL5|FLR1	F-box and leucine rich repeat protein 5	protein-coding
236784	chrX	79097851	79098300	+	0	NA	Intergenic	Intergenic	-46613	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
70823	chr14	103606951	103608150	+	0	NA	Intergenic	Intergenic	-21638	NM_005552	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
19226	chr1	172546701	172546900	+	0	NA	intron (NM_001282751, intron 1 of 21)	AluJb|SINE|Alu	13650	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
26120	chr10	13586671	13587980	+	0	NA	intron (NM_003675, intron 1 of 9)	intron (NM_003675, intron 1 of 9)	360	NM_003675	8559		NM_003675	ENSG00000165630	PRPF18	PRP18|hPrp18	pre-mRNA processing factor 18	protein-coding
38563	chr11	45964671	45965280	+	0	NA	intron (NR_147890, intron 9 of 18)	UCON4|Unknown|Unknown	42319	NM_001300721	120071		NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding
142837	chr20	17558751	17558850	+	0	NA	promoter-TSS (NM_001161705)	promoter-TSS (NM_001161705)	33	NM_001278606	631		NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding
168871	chr3	152295251	152296050	+	0	NA	intron (NM_001376823, intron 1 of 10)	intron (NM_001376823, intron 1 of 10)	-3364	NM_001376821	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
50818	chr12	49093751	49093850	+	0	NA	intron (NM_021044, intron 1 of 2)	intron (NM_021044, intron 1 of 2)	1001	NM_021044	50846		NM_021044	ENSG00000139549	DHH	GDMN|GDXYM|HHG-3|SRXY7	desert hedgehog signaling molecule	protein-coding
85911	chr16	57080771	57081500	+	0	NA	non-coding (NR_169515, exon 46 of 48)	non-coding (NR_169515, exon 46 of 48)	-11448	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
81919	chr16	11742071	11743700	+	0	NA	promoter-TSS (NM_001324025)	promoter-TSS (NM_001324025)	-28	NR_136671	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
135031	chr2	156317071	156317730	+	0	NA	Intergenic	Intergenic	15321	NM_006186	4929		NM_006186	ENSG00000153234	NR4A2	HZF-3|IDLDP|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding
152766	chr22	21771171	21771530	+	0	NA	intron (NM_138957, intron 7 of 7)	AluSz|SINE|Alu	-35556	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
13005	chr1	111185121	111185680	+	0	NA	TTS (NM_006090)	TTS (NM_006090)	15246	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
6538	chr1	28579751	28580700	+	0	NA	promoter-TSS (NR_002987)	promoter-TSS (NR_002987)	287	NR_002976	677825		NR_002976	ENSG00000273544	SNORA44	ACA44	small nucleolar RNA, H/ACA box 44	snoRNA
142496	chr20	4723671	4724100	+	0	NA	intron (NM_012409, intron 1 of 1)	AluJo|SINE|Alu	1976	NM_012409	23627		NM_012409	ENSG00000171864	PRND	DOPPEL|DPL|PrPLP|dJ1068H6.4	prion like protein doppel	protein-coding
77725	chr15	85706601	85707840	+	0	NA	intron (NM_007200, intron 17 of 36)	intron (NM_007200, intron 17 of 36)	51505	NR_120366	101929679		NR_120366		LINC02883	KMU15	long intergenic non-protein coding RNA 2883	ncRNA
140510	chr2	233208051	233209050	+	0	NA	TTS (NM_005541).2	TTS (NM_005541).2	-43021	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
106614	chr18	22341571	22342050	+	0	NA	Intergenic	L2c|LINE|L2	76105	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
9575	chr1	51876971	51877130	+	0	NA	intron (NM_002525, intron 1 of 32)	AluSc|SINE|Alu	990	NM_001242361	4898		NM_002525	ENSG00000078618	NRDC	NRD1|hNRD1|hNRD2	nardilysin convertase	protein-coding
174245	chr4	37970721	37971350	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	10637	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
22810	chr1	224621971	224622230	+	0	NA	intron (NM_152495, intron 1 of 5)	THE1B|LTR|ERVL-MaLR	5783	NM_001322305	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
109767	chr19	1125971	1126730	+	0	NA	intron (NM_001100122, intron 2 of 28).2	intron (NM_001100122, intron 2 of 28).2	5871	NM_001100122	22904		NM_014963	ENSG00000064932	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2	protein-coding
5323	chr1	25237821	25238500	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5658	NM_207170	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
135304	chr2	160279521	160280200	+	0	NA	intron (NM_016836, intron 10 of 13)	intron (NM_016836, intron 10 of 13)	-7965	NR_103775	100505984		NR_103775	ENSG00000285373	LINC02478	-	long intergenic non-protein coding RNA 2478	ncRNA
233674	chrX	1160201	1160600	+	0	NA	Intergenic	Intergenic	52249	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
201388	chr6	145731551	145731650	+	0	NA	intron (NM_001360071, intron 1 of 4)	L1PA8A|LINE|L1	-3269	NR_038246	100507557		NR_038244	ENSG00000235652	EPM2A-DT	FBXO30-DT	EPM2A divergent transcript	ncRNA
223923	chr9	507551	507650	+	0	NA	intron (NM_001354332, intron 1 of 11)	AluSc|SINE|Alu	2905	NM_015158	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
74092	chr15	52786371	52786800	+	0	NA	intron (NM_004498, intron 1 of 1)	intron (NM_004498, intron 1 of 1)	3751	NM_004498	3175		NM_004498	ENSG00000169856	ONECUT1	HNF-6|HNF6|HNF6A	one cut homeobox 1	protein-coding
98393	chr17	46558671	46558830	+	0	NA	intron (NM_001039083, intron 3 of 3).2	intron (NM_001039083, intron 3 of 3).2	20941	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
150836	chr21	44028971	44029130	+	0	NA	intron (NM_003274, intron 1 of 22)	intron (NM_003274, intron 1 of 22)	16741	NM_003274	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
70781	chr14	103517401	103517900	+	0	NA	Intergenic	Intergenic	5180	NM_001362531	1152		NM_001823	ENSG00000166165	CKB	B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29	creatine kinase B	protein-coding
121740	chr19	47740121	47740450	+	0	NA	intron (NM_014601, intron 5 of 5)	intron (NM_014601, intron 5 of 5)	-5261	NM_015710	29997		NM_015710	ENSG00000105373	NOP53	GLTSCR2|PICT-1|PICT1	NOP53 ribosome biogenesis factor	protein-coding
182598	chr5	66017051	66017150	+	0	NA	intron (NM_001253697, intron 7 of 25)	L1MA4|LINE|L1	-71527	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
50111	chr12	44873771	44874350	+	0	NA	intron (NM_001145108, intron 2 of 19)	intron (NM_001145108, intron 2 of 19)	1601	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
96257	chr17	39847151	39847680	+	0	NA	intron (NM_183231, intron 1 of 5)	L3|LINE|CR1	16773	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
150511	chr21	42878771	42880600	+	0	NA	promoter-TSS (NM_001260477)	promoter-TSS (NM_001260477)	-96	NM_001260476	10785		NM_018669	ENSG00000160193	WDR4	GAMOS6|MIGSB|TRM82|TRMT82|Wuho|hWH	WD repeat domain 4	protein-coding
224876	chr9	31519021	31519280	+	0	NA	Intergenic	L1PA7|LINE|L1	-137660	NR_135134	101929620		NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA
236683	chrX	77530651	77530830	+	0	NA	intron (NM_138270, intron 29 of 33)	L1PA11|LINE|L1	83351	NM_003868	8823		NM_003868	ENSG00000196468	FGF16	FGF-16|MF4	fibroblast growth factor 16	protein-coding
110591	chr19	2167371	2167730	+	0	NA	intron (NM_032482, intron 1 of 27)	intron (NM_032482, intron 1 of 27)	3617	NM_032482	84444		NM_032482	ENSG00000104885	DOT1L	DOT1|KMT4	DOT1 like histone lysine methyltransferase	protein-coding
208318	chr7	66124901	66125390	+	0	NA	intron (NM_001040648, intron 1 of 2)	L1MC4|LINE|L1	10298	NM_014478	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
200090	chr6	130185101	130185300	+	0	NA	intron (NM_001258275, intron 7 of 13)	L1ME1|LINE|L1	30685	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
126578	chr2	28756371	28757150	+	0	NA	intron (NM_206876, intron 2 of 8)	AluJo|SINE|Alu	4930	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
151109	chr21	44869401	44869600	+	0	NA	intron (NM_004339, intron 1 of 5)	AluJr|SINE|Alu	4190	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
59106	chr13	21149321	21149930	+	0	NA	TTS (NM_005870)	TTS (NM_005870)	9079	NM_001366643	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
229564	chr9	123111851	123112350	+	0	NA	promoter-TSS (NR_030331)	promoter-TSS (NR_030331)	-457	NR_030331	693185		NR_030331	ENSG00000283941	MIR600	MIRN600|hsa-mir-600	microRNA 600	ncRNA
114146	chr19	11317751	11318130	+	0	NA	intron (NM_012466, intron 6 of 6)	intron (NM_012466, intron 6 of 6)	21717	NM_004283	9545		NM_004283	ENSG00000105514	RAB3D	D2-2|GOV|RAB16|RAD3D	RAB3D, member RAS oncogene family	protein-coding
177890	chr4	128854001	128855030	+	0	NA	intron (NM_199320, intron 6 of 10)	intron (NM_199320, intron 6 of 10)	42671	NM_001287443	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
119202	chr19	39441451	39441750	+	0	NA	Intergenic	Intergenic	-3946	NM_001130825	6829		NM_003169	ENSG00000196235	SUPT5H	SPT5|SPT5H|Tat-CT1	SPT5 homolog, DSIF elongation factor subunit	protein-coding
214640	chr7	150746871	150747430	+	0	NA	Intergenic	Intergenic	9802	NM_018384	55340		NM_018384	ENSG00000196329	GIMAP5	HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD|NCPH2	GTPase, IMAP family member 5	protein-coding
4311	chr1	20322001	20322400	+	0	NA	intron (NM_001039500, intron 7 of 21)	L2c|LINE|L2	31325	NM_001039500	127731		NM_144623	ENSG00000158816	VWA5B1	-	von Willebrand factor A domain containing 5B1	protein-coding
34134	chr10	128044971	128045130	+	0	NA	intron (NM_001323354, intron 2 of 19)	MER102a|DNA|hAT-Charlie	-2562	NM_130435	5791		NM_006504	ENSG00000132334	PTPRE	HPTPE|PTPE|R-PTP-EPSILON	protein tyrosine phosphatase receptor type E	protein-coding
195887	chr6	41699051	41699350	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	34410	NR_162107	113218489		NR_162107		MIR10398	-	microRNA 10398	ncRNA
23721	chr1	231930101	231930300	+	0	NA	intron (NR_126441, intron 1 of 3)	MIR3|SINE|MIR	4366	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA
65863	chr14	55059351	55060830	+	0	NA	intron (NM_144578, intron 1 of 3)	L1ME2|LINE|L1	8443	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
202741	chr6	159010001	159010280	+	0	NA	Intergenic	(TGCC)n|Simple_repeat|Simple_repeat	-9938	NM_031924	83861		NM_031924	ENSG00000130363	RSPH3	CILD32|RSHL2|RSP3|dJ111C20.1	radial spoke head 3	protein-coding
146459	chr20	49702601	49703050	+	0	NA	intron (NM_004776, intron 1 of 8)	AluJb|SINE|Alu	11053	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
38690	chr11	46570601	46571400	+	0	NA	intron (NM_001367471, intron 1 of 18)	intron (NM_001367471, intron 1 of 18)	16444	NR_160027	55626		NM_017749	ENSG00000110497	AMBRA1	DCAF3|WDR94	autophagy and beclin 1 regulator 1	protein-coding
228742	chr9	109968151	109968650	+	0	NA	intron (NM_147150, intron 6 of 9)	intron (NM_147150, intron 6 of 9)	-80198	NM_001004065	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
179408	chr4	184168401	184168700	+	0	NA	intron (NM_153343, intron 1 of 7)	CpG	49323	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
58227	chr12	128543701	128543900	+	0	NA	intron (NM_001136103, intron 2 of 8)	intron (NM_001136103, intron 2 of 8)	249708	NR_037406	100500817		NR_037406	ENSG00000265635	MIR3612	-	microRNA 3612	ncRNA
187232	chr5	141326001	141326800	+	0	NA	Intergenic	Intergenic	-4285	NM_018912	56114		NM_018912	ENSG00000204956	PCDHGA1	PCDH-GAMMA-A1	protocadherin gamma subfamily A, 1	protein-coding
127401	chr2	42047171	42049050	+	0	NA	promoter-TSS (NM_138370)	promoter-TSS (NM_138370)	89	NM_138370	91461		NM_138370	ENSG00000162878	PKDCC	RLSDF|SGK493|Vlk	protein kinase domain containing, cytoplasmic	protein-coding
117454	chr19	19684851	19685500	+	0	NA	Intergenic	AluSx1|SINE|Alu	16336	NM_033204	94039		NM_033204	ENSG00000181896	ZNF101	HZF12	zinc finger protein 101	protein-coding
40231	chr11	63565001	63565600	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1921	NM_017878	54979		NM_017878	ENSG00000133328	PLAAT2	HRASLS2|PLA1/2-2|PLAAT-2	phospholipase A and acyltransferase 2	protein-coding
123220	chr19	52811721	52812150	+	0	NA	intron (NR_163139, intron 2 of 5)	SVA_E|Retroposon|SVA	9698	NM_006969	7576		NM_006969	ENSG00000198538	ZNF28	KOX24	zinc finger protein 28	protein-coding
90767	chr17	2060121	2060380	+	0	NA	TTS (NM_001098202)	TTS (NM_001098202)	3940	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
157062	chr22	42590251	42590630	+	0	NA	intron (NM_001278657, intron 7 of 8)	AluJb|SINE|Alu	-8429	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
193127	chr6	28989571	28990130	+	0	NA	Intergenic	L2c|LINE|L2	4002	NR_145490	414761		NR_135289		HCG15	HCG16	HLA complex group 15	ncRNA
171394	chr3	196185071	196185700	+	0	NA	Intergenic	MIRc|SINE|MIR	26015	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
192489	chr6	24956271	24957030	+	0	NA	intron (NM_001286446, intron 1 of 13)	MIR|SINE|MIR	-20690	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
52629	chr12	56271021	56271630	+	0	NA	TTS (NM_004077)	TTS (NM_004077)	3999	NM_001099337	93058		NM_144576	ENSG00000135469	COQ10A	-	coenzyme Q10A	protein-coding
6390	chr1	27912371	27913130	+	0	NA	intron (NM_001355128, intron 1 of 7)	MIR|SINE|MIR	1825	NM_002946	6118		NM_002946	ENSG00000117748	RPA2	REPA2|RP-A p32|RP-A p34|RPA32	replication protein A2	protein-coding
38665	chr11	46388671	46388830	+	0	NA	intron (NM_001366692, intron 1 of 1)	intron (NM_001366692, intron 1 of 1)	2918	NM_001366692	1132		NM_000741	ENSG00000180720	CHRM4	HM4|M4R	cholinergic receptor muscarinic 4	protein-coding
168793	chr3	152188521	152189050	+	0	NA	intron (NR_136178, intron 1 of 2)	Tigger1|DNA|TcMar-Tigger	16644	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
98744	chr17	48047351	48050080	+	0	NA	intron (NM_001330261, intron 1 of 5)	CpG	356	NM_003204	4779		NM_003204	ENSG00000082641	NFE2L1	LCR-F1|NRF-1|NRF1|TCF11	NFE2 like bZIP transcription factor 1	protein-coding
136051	chr2	172557621	172557880	+	0	NA	intron (NR_103729, intron 1 of 11)	FLAM_C|SINE|Alu	1660	NM_001278549	5163		NM_002610	ENSG00000152256	PDK1	-	pyruvate dehydrogenase kinase 1	protein-coding
181882	chr5	54520521	54521450	+	0	NA	TTS (NM_052870)	TTS (NM_052870)	3226	NM_001102575	112574		NM_052870	ENSG00000178996	SNX18	SH3PX2|SH3PXD3B|SNAG1	sorting nexin 18	protein-coding
8248	chr1	39767571	39767950	+	0	NA	intron (NM_001720, intron 3 of 6)	intron (NM_001720, intron 3 of 6)	3588	NM_022120	64064		NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding
68018	chr14	75137601	75137800	+	0	NA	intron (NM_006827, intron 3 of 4)	AluSx|SINE|Alu	-10652	NM_001329237	91754		NM_033116	ENSG00000119638	NEK9	APUG|LCCS10|NC|NERCC|NERCC1	NIMA related kinase 9	protein-coding
126166	chr2	26362571	26362730	+	0	NA	intron (NR_137633, intron 1 of 9)	AluSx|SINE|Alu	-15861	NM_153835	165082		NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding
239228	chrY	12942321	12942900	+	0	NA	Intergenic	Intergenic	36905	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
80534	chr16	2769351	2771000	+	0	NA	intron (NM_016333, intron 12 of 14)	L2c|LINE|L2	7105	NM_207013	6923		NM_007108	ENSG00000103363	ELOB	SIII|TCEB2	elongin B	protein-coding
209582	chr7	77508371	77509130	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-28545	NM_002835	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
165810	chr3	105820101	105820580	+	0	NA	intron (NM_001321811, intron 3 of 16)	MER1A|DNA|hAT-Charlie	47251	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
26507	chr10	18658271	18658500	+	0	NA	intron (NM_001351116, intron 1 of 11)	intron (NM_001351116, intron 1 of 11)	853	NM_001351116	221078		NM_182543	ENSG00000241058	NSUN6	4933414E04Rik|ARL5B-AS1|MRT82|NOPD1	NOP2/Sun RNA methyltransferase 6	protein-coding
226660	chr9	74962971	74963330	+	0	NA	intron (NR_121183, intron 1 of 4)	MLT1F|LTR|ERVL-MaLR	10185	NR_121183	101927380		NR_121183		CARNMT1-AS1	C9orf41-AS1	CARNMT1 antisense RNA 1	ncRNA
238938	chrX	154801571	154802330	+	0	NA	intron (NM_001166462, intron 1 of 12)	intron (NM_001166462, intron 1 of 12)	3535	NM_002436	4354		NM_002436	ENSG00000130830	MPP1	AAG12|DXS552E|EMP55|MRG1|PEMP	MAGUK p55 scaffold protein 1	protein-coding
231377	chr9	130689971	130690680	+	0	NA	Intergenic	MER51A|LTR|ERV1	-3435	NM_001282709	23404		NM_014285	ENSG00000130713	EXOSC2	RRP4|Rrp4p|SHRF|hRrp4p|p7	exosome component 2	protein-coding
211241	chr7	102649901	102650100	+	0	NA	promoter-TSS (NM_001031618)	promoter-TSS (NM_001031618)	-325	NM_001166339	100310812		NM_001166339	ENSG00000173678	SPDYE2B	SPDYE2L	speedy/RINGO cell cycle regulator family member E2B	protein-coding
23883	chr1	234881921	234882430	+	0	NA	Intergenic	MIRb|SINE|MIR	81824	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
101379	chr17	67293301	67294300	+	0	NA	Intergenic	Intergenic	-48604	NM_001330447	9931		NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
168694	chr3	150614301	150614700	+	0	NA	intron (NM_016275, intron 1 of 5)	intron (NM_016275, intron 1 of 5)	11179	NM_016275	51714		NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding
188812	chr5	158695551	158696000	+	0	NA	TTS (NM_001324109)	TTS (NM_001324109)	-286002	NR_109888	101927697		NR_109888	ENSG00000276778	LINC02227	-	long intergenic non-protein coding RNA 2227	ncRNA
77959	chr15	89366071	89366230	+	0	NA	intron (NR_133002, intron 1 of 5)	intron (NR_133002, intron 1 of 5)	-1867	NR_029692	407051		NR_029692	ENSG00000284329	MIR9-3	MIRN9-3|hsa-mir-9-3|miRNA9-3|mir-9-3	microRNA 9-3	ncRNA
79546	chr16	903851	904150	+	0	NA	intron (NM_001352017, intron 5 of 11)	intron (NM_001352017, intron 5 of 11)	-17033	NR_110946	101929387		NR_110945	ENSG00000260439	LMF1-AS1	LA16c-366D3.1	LMF1 antisense RNA 1	ncRNA
169305	chr3	158672051	158673280	+	0	NA	promoter-TSS (NM_020169)	promoter-TSS (NM_020169)	-17	NM_020169	56925		NM_020169	ENSG00000079257	LXN	ECI|TCI	latexin	protein-coding
49847	chr12	32681351	32682200	+	0	NA	intron (NM_001330380, intron 1 of 18)	intron (NM_001330380, intron 1 of 18)	2474	NM_012062	10059		NM_005690	ENSG00000087470	DNM1L	DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5	dynamin 1 like	protein-coding
120452	chr19	44577051	44577150	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-20183	NR_027754	388550		NR_027754	ENSG00000290603	CEACAM22P	-	CEA cell adhesion molecule 22, pseudogene	pseudo
214996	chr7	152335651	152336220	+	0	NA	intron (NM_170606, intron 2 of 58)	intron (NM_170606, intron 2 of 58)	100068	NM_170606	58508		NM_021230	ENSG00000055609	KMT2C	HALR|KLEFS2|MLL3	lysine methyltransferase 2C	protein-coding
89411	chr16	88854521	88855200	+	0	NA	intron (NM_001323544, intron 1 of 14)	intron (NM_001323544, intron 1 of 14)	-1360	NR_134671	51693		NM_016209	ENSG00000167515	TRAPPC2L	HSPC176|PERRB	trafficking protein particle complex subunit 2L	protein-coding
18520	chr1	161787451	161787550	+	0	NA	intron (NM_007348, intron 4 of 15)	intron (NM_007348, intron 4 of 15)	21180	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
226589	chr9	73114901	73115330	+	0	NA	Intergenic	Intergenic	-36750	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
233891	chrX	1594221	1594950	+	0	NA	promoter-TSS (NM_004043)	promoter-TSS (NM_004043)	-870	NM_004043	438		NM_004043	ENSG00000196433	ASMT	ASMTY|HIOMT|HIOMTY	acetylserotonin O-methyltransferase	protein-coding
11659	chr1	91809201	91810230	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	76436	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
15651	chr1	150807051	150807580	+	0	NA	intron (NM_000396, intron 1 of 7)	intron (NM_000396, intron 1 of 7)	945	NM_000396	1513		NM_000396	ENSG00000143387	CTSK	CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD	cathepsin K	protein-coding
129737	chr2	70958351	70959050	+	0	NA	intron (NM_001692, intron 4 of 13)	MamTip2|DNA|hAT-Tip100	-10089	NR_110273	101927750		NR_110273	ENSG00000239322	ATP6V1B1-AS1	-	ATP6V1B1 antisense RNA 1	ncRNA
101073	chr17	64860521	64860780	+	0	NA	exon (NM_001303255, exon 8 of 11)	exon (NM_001303255, exon 8 of 11)	-23466	NR_024386	440456		NR_024386	ENSG00000291117	PLEKHM1P1	PLEKHM1P	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudo
13738	chr1	116817621	116818180	+	0	NA	Intergenic	Intergenic	63470	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
105156	chr17	82253921	82254180	+	0	NA	intron (NM_139062, intron 3 of 9)	CpG	17382	NR_106845	102465472		NR_106845	ENSG00000284574	MIR6787	hsa-mir-6787	microRNA 6787	ncRNA
37123	chr11	13320071	13320430	+	0	NA	intron (NM_001351815, intron 2 of 17)	intron (NM_001351815, intron 2 of 17)	42460	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
130123	chr2	74560701	74561300	+	0	NA	intron (NM_001321739, intron 8 of 10)	intron (NM_001321739, intron 8 of 10)	6840	NM_001381	1796		NM_001381	ENSG00000115325	DOK1	P62DOK|pp62	docking protein 1	protein-coding
182178	chr5	56696871	56697630	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	75621	NM_001365184	105378979		NM_001365184	ENSG00000289709	LOC105378979	-	growth/differentiation factor 3	ncRNA
96219	chr17	39775021	39775400	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	3015	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
205650	chr7	22821651	22822100	+	0	NA	intron (NR_168014, intron 1 of 2)	AluSc8|SINE|Alu	974	NR_168015	54543		NM_019059	ENSG00000196683	TOMM7	GMPGS|TOM7	translocase of outer mitochondrial membrane 7	protein-coding
238074	chrX	136146971	136148300	+	0	NA	promoter-TSS (NM_001159700)	promoter-TSS (NM_001159700)	-17	NM_001369329	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
110171	chr19	1655501	1656600	+	0	NA	Intergenic	Intergenic	-3435	NM_001351778	6929		NM_003200	ENSG00000071564	TCF3	AGM8|AGM8A|AGM8B|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75	transcription factor 3	protein-coding
76116	chr15	72514571	72515000	+	0	NA	intron (NM_005744, intron 1 of 13)	AluSz|SINE|Alu	40455	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
18671	chr1	167163301	167163700	+	0	NA	Intergenic	Intergenic	32305	NR_110811	101928484		NR_110811	ENSG00000231605	LINC01363	RBSG4	long intergenic non-protein coding RNA 1363	ncRNA
109048	chr18	79791601	79791800	+	0	NA	Intergenic	Intergenic	-71968	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
56786	chr12	120192401	120192800	+	0	NA	intron (NM_006836, intron 1 of 57)	AluSx3|SINE|Alu	2115	NM_006836	10985		NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1 activator of EIF2AK4	protein-coding
174872	chr4	48738421	48738680	+	0	NA	intron (NM_015030, intron 1 of 63)	AluJr|SINE|Alu	41729	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
231520	chr9	131422251	131423150	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	28614	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
126198	chr2	26780471	26780830	+	0	NA	3' UTR (NM_017877, exon 6 of 6)	3' UTR (NM_017877, exon 6 of 6)	-5365	NM_001042426	1058		NM_001809	ENSG00000115163	CENPA	CENP-A|CenH3	centromere protein A	protein-coding
81957	chr16	11853271	11853430	+	0	NA	Intergenic	AluJb|SINE|Alu	-1808	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
236732	chrX	78119371	78120300	+	0	NA	intron (NM_000291, intron 6 of 10)	THE1B|LTR|ERVL-MaLR	15587	NM_000291	5230		NM_000291	ENSG00000102144	PGK1	HEL-S-68p|MIG10|PGKA	phosphoglycerate kinase 1	protein-coding
66464	chr14	61557301	61557730	+	0	NA	intron (NR_110417, intron 3 of 3)	L3|LINE|CR1	12679	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
205900	chr7	25124621	25126000	+	0	NA	promoter-TSS (NM_018947)	promoter-TSS (NM_018947)	-50	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
186625	chr5	138541151	138541530	+	0	NA	intron (NM_001291975, intron 2 of 11)	intron (NM_001291975, intron 2 of 11)	371	NM_001282185	2107		NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding
13569	chr1	116006051	116007180	+	0	NA	intron (NM_018420, intron 2 of 11)	intron (NM_018420, intron 2 of 11)	-29339	NR_125970	101928977		NR_125970		LOC101928977	-	uncharacterized LOC101928977	ncRNA
229105	chr9	114389021	114389450	+	0	NA	intron (NM_030767, intron 1 of 21)	L2a|LINE|L2	-1253	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
214968	chr7	151935871	151936730	+	0	NA	Intergenic	Intergenic	-20146	NR_033169	168391		NM_145292	ENSG00000106648	GALNTL5	GALNACT19|GALNT15|GalNAc-T5L	polypeptide N-acetylgalactosaminyltransferase like 5	protein-coding
160772	chr3	32738531	32738650	+	0	NA	intron (NM_001256742, intron 13 of 18)	AluY|SINE|Alu	43049	NM_001256742	25904		NM_015442	ENSG00000182973	CNOT10	-	CCR4-NOT transcription complex subunit 10	protein-coding
63983	chr14	22268671	22269080	+	0	NA	Intergenic	LTR16C|LTR|ERVL	163878	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
21486	chr1	205678301	205678500	+	0	NA	intron (NM_033102, intron 1 of 4)	intron (NM_033102, intron 1 of 4)	2109	NM_033102	85414		NM_033102	ENSG00000158715	SLC45A3	IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST	solute carrier family 45 member 3	protein-coding
82403	chr16	16202421	16202680	+	0	NA	intron (NR_147784, intron 8 of 28)	MLT1B|LTR|ERVL-MaLR	20921	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
193292	chr6	30070951	30072130	+	0	NA	exon (NM_170769, exon 4 of 5)	exon (NM_170769, exon 4 of 5)	4309	NM_170769	80352		NM_025236	ENSG00000204618	RNF39	FAP216|HZF|HZFW|LIRF	ring finger protein 39	protein-coding
140048	chr2	231361901	231362800	+	0	NA	promoter-TSS (NR_039937)	promoter-TSS (NR_039937)	-358	NR_039937	100616317		NR_039937	ENSG00000263641	MIR4777	-	microRNA 4777	ncRNA
81435	chr16	8861651	8862080	+	0	NA	promoter-TSS (NM_001278262)	promoter-TSS (NM_001278262)	-55	NM_001278266	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
2380	chr1	9418351	9418850	+	0	NA	Intergenic	AluSp|SINE|Alu	10316	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
207325	chr7	44043971	44045480	+	0	NA	promoter-TSS (NM_001284313)	promoter-TSS (NM_001284313)	23	NM_001014436	28988		NM_014063	ENSG00000136279	DBNL	ABP1|HIP-55|HIP55|SH3P7	drebrin like	protein-coding
185026	chr5	115549171	115549500	+	0	NA	Intergenic	Intergenic	-4560	NM_020177	56929		NM_020177	ENSG00000145780	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog C	protein-coding
190618	chr5	181186001	181186300	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	5758	NR_108031	102577426		NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA
195506	chr6	37182151	37182250	+	0	NA	Intergenic	AluY|SINE|Alu	12048	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
22684	chr1	223838521	223839230	+	0	NA	intron (NM_001031685, intron 1 of 17)	intron (NM_001031685, intron 1 of 17)	7072	NM_001031685	7159		NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding
41250	chr11	65809971	65810450	+	0	NA	Intergenic	Intergenic	-19342	NR_108085	101927828		NR_108085	ENSG00000255120	OVOL1-AS1	-	OVOL1 antisense RNA 1	ncRNA
138277	chr2	203673921	203674180	+	0	NA	Intergenic	Intergenic	-32425	NM_001243078	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
118341	chr19	35630251	35630350	+	0	NA	intron (NM_024321, intron 2 of 9)	AluSc|SINE|Alu	1264	NM_024321	79171		NM_024321	ENSG00000126254	RBM42	-	RNA binding motif protein 42	protein-coding
226948	chr9	79666151	79666250	+	0	NA	intron (NM_001351547, intron 7 of 18)	intron (NM_001351547, intron 7 of 18)	93023	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
37788	chr11	32435321	32435580	+	0	NA	promoter-TSS (NR_120549)	promoter-TSS (NR_120549)	-68	NR_120549	51352		NM_015855	ENSG00000183242	WT1-AS	WIT-1|WIT1|WT1-AS1|WT1AS	WT1 antisense RNA	ncRNA
208279	chr7	65946871	65947130	+	0	NA	intron (NM_001284342, intron 1 of 1)	AluJb|SINE|Alu	35213	NM_001284290	2990		NM_000181	ENSG00000169919	GUSB	BG|MPS7	glucuronidase beta	protein-coding
190485	chr5	180315401	180316180	+	0	NA	intron (NM_005110, intron 13 of 18)	intron (NM_005110, intron 13 of 18)	-23707	NM_001135044	5601		NM_002752	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
91482	chr17	4894701	4894930	+	0	NA	intron (NM_015716, intron 23 of 30)	MIRc|SINE|MIR	-4721	NM_001145536	100130311		NM_001145536	ENSG00000205710	C17orf107	-	chromosome 17 open reading frame 107	protein-coding
42527	chr11	70814771	70815130	+	0	NA	intron (NM_001379226, intron 2 of 15)	intron (NM_001379226, intron 2 of 15)	11944	NM_001379226	22941		NM_012309	ENSG00000162105	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
72826	chr15	40124201	40125750	+	0	NA	Intergenic	Intergenic	-16096	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
25963	chr10	11632171	11632630	+	0	NA	Intergenic	L1MB2|LINE|L1	-20611	NR_125732	9712		NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding
178097	chr4	140427051	140427700	+	0	NA	intron (NM_001130675, intron 1 of 15)	CpG	273	NM_004362	1047		NM_004362	ENSG00000153132	CLGN	-	calmegin	protein-coding
212677	chr7	129614801	129615370	+	0	NA	intron (NM_005011, intron 1 of 10)	intron (NM_005011, intron 1 of 10)	3365	NM_001293164	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
130770	chr2	86833321	86833980	+	0	NA	intron (NM_172101, intron 5 of 6)	intron (NM_172101, intron 5 of 6)	-25254	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
143885	chr20	32571501	32571700	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	13733	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
198973	chr6	110892371	110892530	+	0	NA	intron (NR_109768, intron 3 of 5)	intron (NR_109768, intron 3 of 5)	17666	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
152232	chr22	20156701	20157580	+	0	NA	Intergenic	Intergenic	-6085	NM_001365892	388849		NM_001243537	ENSG00000234409	CCDC188	-	coiled-coil domain containing 188	protein-coding
55727	chr12	108306101	108306500	+	0	NA	intron (NM_001142344, intron 1 of 2)	LTR33|LTR|ERVL	14362	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
183631	chr5	80232051	80233080	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluSg|SINE|Alu	23483	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
182062	chr5	55943751	55944050	+	0	NA	intron (NR_157112, intron 16 of 17)	AluSq|SINE|Alu	51063	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
48973	chr12	12997371	12997930	+	0	NA	intron (NM_015987, intron 1 of 3)	LTR33A_|LTR|ERVL	2615	NM_015987	50865		NM_015987	ENSG00000013583	HEBP1	HBP|HEBP	heme binding protein 1	protein-coding
39483	chr11	61009371	61009730	+	0	NA	intron (NM_006725, intron 4 of 12)	intron (NM_006725, intron 4 of 12)	37870	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
165204	chr3	72791071	72791300	+	0	NA	intron (NM_018130, intron 10 of 10)	intron (NM_018130, intron 10 of 10)	57260	NM_018130	55164		NM_018130	ENSG00000144736	SHQ1	DYT35|GRIM-1|NEDDS|Shq1p	SHQ1, H/ACA ribonucleoprotein assembly factor	protein-coding
101346	chr17	67080901	67081100	+	0	NA	intron (NM_001330447, intron 32 of 32)	MLT1J|LTR|ERVL-MaLR	36446	NM_000727	786		NM_000727	ENSG00000108878	CACNG1	CACNLG	calcium voltage-gated channel auxiliary subunit gamma 1	protein-coding
5622	chr1	26161401	26162230	+	0	NA	exon (NM_024869, exon 2 of 2)	exon (NM_024869, exon 2 of 2)	2736	NM_024869	79927		NM_024869	ENSG00000197245	FAM110D	GRRP1	family with sequence similarity 110 member D	protein-coding
81612	chr16	10738621	10739430	+	0	NA	Intergenic	AluSq|SINE|Alu	-4761	NM_001278506	4682		NM_002484	ENSG00000103274	NUBP1	CIAO5|NBP|NBP1|NBP35	NUBP iron-sulfur cluster assembly factor 1, cytosolic	protein-coding
176089	chr4	82898121	82898700	+	0	NA	promoter-TSS (NR_132760)	promoter-TSS (NR_132760)	-185	NR_132760	106633809		NR_132760		SNORD144	SNORA97|ZL6	small nucleolar RNA, C/D box 144	snoRNA
41770	chr11	66744321	66745650	+	0	NA	intron (NM_001302084, intron 1 of 14)	CpG	216	NM_001302084	79703		NM_024650	ENSG00000173715	TOP6BL	C11orf80|HYDM4|TOPOVIBL	TOP6B like initiator of meiotic double strand breaks	protein-coding
204745	chr7	5574201	5574950	+	0	NA	Intergenic	Intergenic	-18241	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
145125	chr20	38811771	38812500	+	0	NA	intron (NM_001172735, intron 1 of 9)	intron (NM_001172735, intron 1 of 9)	6438	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
148362	chr20	63857601	63857800	+	0	NA	Intergenic	Intergenic	-3798	NM_080622	140701		NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
191272	chr6	6131571	6131730	+	0	NA	Intergenic	Intergenic	-37684	NR_049863	100847034		NR_049863	ENSG00000283616	MIR5683	-	microRNA 5683	ncRNA
18869	chr1	167938551	167938850	+	0	NA	intron (NM_001349780, intron 1 of 17)	intron (NM_001349780, intron 1 of 17)	-1628	NM_001143674	25874		NM_015415	ENSG00000143158	MPC2	BRP44|SLC54A2	mitochondrial pyruvate carrier 2	protein-coding
118847	chr19	38638371	38638800	+	0	NA	Intergenic	Intergenic	-9064	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
23130	chr1	226700121	226700450	+	0	NA	intron (NM_002221, intron 2 of 7)	AluSc8|SINE|Alu	-25217	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
206853	chr7	37411551	37412100	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	37127	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
70699	chr14	103185401	103185600	+	0	NA	Intergenic	MER65-int|LTR|ERV1	3528	NR_033938	100131366		NR_033938	ENSG00000251533	LINC00605	-	long intergenic non-protein coding RNA 605	ncRNA
72051	chr15	28819221	28820200	+	0	NA	intron (NR_037599, intron 10 of 13)	MER1B|DNA|hAT-Charlie	28975	NM_001365371	728310		NM_001365371	ENSG00000261649	GOLGA6L7	GOLGA6L7P	golgin A6 family like 7	protein-coding
46015	chr11	121655351	121656180	+	0	NA	Intergenic	Intergenic	-173976	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
59288	chr13	24256521	24257280	+	0	NA	intron (NM_153023, intron 3 of 11)	intron (NM_153023, intron 3 of 11)	-2461	NR_046531	100874231		NR_046531	ENSG00000227213	SPATA13-AS1	-	SPATA13 antisense RNA 1	ncRNA
2850	chr1	11271471	11271830	+	0	NA	Intergenic	MER63C|DNA|hAT-Blackjack	-1548	NM_001330350	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
138026	chr2	201282421	201282730	+	0	NA	TTS (NM_033358)	TTS (NM_033358)	22039	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
181750	chr5	50713301	50713900	+	0	NA	intron (NM_024615, intron 2 of 25)	MLT1D|LTR|ERVL-MaLR	46186	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
179064	chr4	165541971	165542330	+	0	NA	Intergenic	Intergenic	-142489	NR_121676	101928151		NR_121676	ENSG00000249500	LINC01179	-	long intergenic non-protein coding RNA 1179	ncRNA
67942	chr14	74774001	74774400	+	0	NA	intron (NM_019589, intron 1 of 20)	MER47B|DNA|TcMar-Tigger	10884	NM_019589	56252		NM_019589	ENSG00000119596	YLPM1	C14orf170|PPP1R169|ZAP113|ZAP3	YLP motif containing 1	protein-coding
56053	chr12	110553371	110553530	+	0	NA	intron (NM_139283, intron 1 of 5)	intron (NM_139283, intron 1 of 5)	29868	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
33303	chr10	114820071	114820550	+	0	NA	Intergenic	MIR|SINE|MIR	-1470	NM_020940	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
120920	chr19	45644101	45644300	+	0	NA	promoter-TSS (NM_001352053)	promoter-TSS (NM_001352053)	-471	NR_147903	24139		NM_012155	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	EMAP like 2	protein-coding
185277	chr5	126373551	126374150	+	0	NA	intron (NM_001146319, intron 1 of 13)	L2a|LINE|L2	13730	NM_001146319	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
134448	chr2	143160001	143160200	+	0	NA	intron (NM_018460, intron 2 of 13)	intron (NM_018460, intron 2 of 13)	30681	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
153509	chr22	26498801	26499330	+	0	NA	intron (NM_001346862, intron 7 of 12)	intron (NM_001346862, intron 7 of 12)	13408	NM_012143	24144		NM_012143	ENSG00000100109	TFIP11	NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6	tuftelin interacting protein 11	protein-coding
74174	chr15	55402871	55403100	+	0	NA	intron (NR_037923, intron 8 of 15)	intron (NR_037923, intron 8 of 15)	5374	NM_020739	9236		NM_004748	ENSG00000260916	CCPG1	CPR8	cell cycle progression 1	protein-coding
159258	chr3	12938121	12938380	+	0	NA	intron (NM_014869, intron 2 of 13)	intron (NM_014869, intron 2 of 13)	29480	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
95244	chr17	35375901	35376430	+	0	NA	Intergenic	Intergenic	-2544	NM_001104587	91607		NM_152270	ENSG00000172716	SLFN11	SLFN8/9	schlafen family member 11	protein-coding
103093	chr17	77332101	77333630	+	0	NA	intron (NM_006640, intron 1 of 10)	L1ME2z|LINE|L1	13350	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
59939	chr13	31158251	31158600	+	0	NA	intron (NM_001286503, intron 2 of 16)	AluSg|SINE|Alu	3479	NM_006644	10808		NM_006644	ENSG00000120694	HSPH1	HSP105|HSP105A|HSP105B|NY-CO-25	heat shock protein family H (Hsp110) member 1	protein-coding
54685	chr12	93411871	93412030	+	0	NA	intron (NM_003348, intron 1 of 3)	AluJb|SINE|Alu	29997	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
50351	chr12	47188901	47189500	+	0	NA	intron (NM_001281429, intron 2 of 2)	intron (NM_001281429, intron 2 of 2)	1388	NR_039847	100616486		NR_039847	ENSG00000263838	MIR4698	-	microRNA 4698	ncRNA
31855	chr10	99869721	99870750	+	0	NA	Intergenic	L1PA8|LINE|L1	43857	NM_001318327	23268		NM_015221	ENSG00000107554	DNMBP	ARHGEF36|CTRCT48|TUBA	dynamin binding protein	protein-coding
114179	chr19	11385351	11385450	+	0	NA	Intergenic	AluSz|SINE|Alu	-1086	NR_033663	2057		NM_000121	ENSG00000187266	EPOR	EPO-R	erythropoietin receptor	protein-coding
190992	chr6	3051901	3052300	+	0	NA	Intergenic	Intergenic	-11867	NM_001317061	8737		NM_003804	ENSG00000137275	RIPK1	AIEFL|IMD57|RIP|RIP-1|RIP1	receptor interacting serine/threonine kinase 1	protein-coding
27842	chr10	38528821	38529080	+	0	NA	Intergenic	Intergenic	100804	NR_024497	399744		NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
50896	chr12	49274021	49274650	+	0	NA	TTS (NM_001303114)	TTS (NM_001303114)	9253	NM_032704	84790		NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
141551	chr2	241443521	241444380	+	0	NA	intron (NM_001282984, intron 13 of 17)	intron (NM_001282984, intron 13 of 17)	-33955	NR_036083	100422942		NR_036083	ENSG00000263752	MIR3133	-	microRNA 3133	ncRNA
183709	chr5	80982101	80982300	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-21293	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
231871	chr9	132973771	132974130	+	0	NA	intron (NM_004188, intron 2 of 10)	MLT1K|LTR|ERVL-MaLR	-4744	NM_001135031	8328		NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding
1733	chr1	5975331	5976200	+	0	NA	intron (NM_001291594, intron 1 of 25)	intron (NM_001291594, intron 1 of 25)	16660	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
9261	chr1	46246751	46249600	+	0	NA	5' UTR (NM_003579, exon 1 of 18)	5' UTR (NM_003579, exon 1 of 18)	412	NM_003579	8438		NM_003579	ENSG00000085999	RAD54L	HR54|RAD54A|hHR54|hRAD54	RAD54 like	protein-coding
166613	chr3	119352171	119352550	+	0	NA	intron (NM_020754, intron 1 of 11)	intron (NM_020754, intron 1 of 11)	-29600	NR_046748	100874246		NR_046748	ENSG00000241155	ARHGAP31-AS1	-	ARHGAP31 antisense RNA 1	ncRNA
89150	chr16	88523721	88524180	+	0	NA	intron (NR_148997, intron 2 of 3)	CpG	7103	NR_148997	100128882		NR_148997	ENSG00000261744	ZFPM1-AS1	-	ZFPM1 antisense RNA 1	ncRNA
211823	chr7	108270501	108270700	+	0	NA	intron (NM_001371141, intron 3 of 29)	L1MB3|LINE|L1	-27215	NM_001371182	4897		NM_005010	ENSG00000091129	NRCAM	NEDNMS	neuronal cell adhesion molecule	protein-coding
208246	chr7	65509851	65510280	+	0	NA	intron (NR_157837, intron 4 of 4)	CpG	45000	NR_157837	101929322		NR_157837		LOC101929322	-	integrator complex subunit 4 pseudogene	pseudo
225863	chr9	38371551	38371730	+	0	NA	Intergenic	Intergenic	-21062	NM_000692	219		NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding
219832	chr8	81723151	81723450	+	0	NA	Intergenic	Intergenic	-1996	NR_033194	79752		NM_024699	ENSG00000104231	ZFAND1	-	zinc finger AN1-type containing 1	protein-coding
3940	chr1	18368551	18368650	+	0	NA	intron (NM_032880, intron 6 of 9)	intron (NM_032880, intron 6 of 9)	-112330	NM_152375	127707		NM_152375	ENSG00000179023	KLHDC7A	-	kelch domain containing 7A	protein-coding
233397	chr9	137555271	137555700	+	0	NA	exon (NM_001346376, exon 10 of 10)	exon (NM_001346376, exon 10 of 10)	3606	NM_032477	64975		NM_032477	ENSG00000182154	MRPL41	BMRP|MRP-L27|MRPL27|PIG3|RPML27|mL41	mitochondrial ribosomal protein L41	protein-coding
228597	chr9	104991601	104992450	+	0	NA	Intergenic	Intergenic	-63870	NM_005502	19		NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLCQTL13|HDLDT1|HPALP1|TGD	ATP binding cassette subfamily A member 1	protein-coding
103399	chr17	78172001	78172830	+	0	NA	3' UTR (NM_001363778, exon 3 of 3)	3' UTR (NM_001363778, exon 3 of 3)	3834	NM_004710	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
199519	chr6	118712151	118712500	+	0	NA	Intergenic	Intergenic	-2250	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
88102	chr16	81525671	81526130	+	0	NA	intron (NM_030629, intron 1 of 20)	L1MB3|LINE|L1	-8002	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
99681	chr17	50756701	50757500	+	0	NA	TTS (NM_016424)	TTS (NM_016424)	10418	NM_001358683	55018		NM_017928	ENSG00000167117	ANKRD40CL	C17orf73|LINC00483	ANKRD40 C-terminal like	protein-coding
61673	chr13	73987821	73988280	+	0	NA	intron (NM_007249, intron 2 of 7)	intron (NM_007249, intron 2 of 7)	145879	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
34515	chr10	132616071	132617300	+	0	NA	intron (NM_005539, intron 2 of 15)	intron (NM_005539, intron 2 of 15)	-64590	NM_001321042	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
215755	chr8	1978051	1978150	+	0	NA	intron (NM_014867, intron 1 of 1)	L1PA10|LINE|L1	4423	NM_014867	9920		NM_014867	ENSG00000176595	KBTBD11	KLHDC7C	kelch repeat and BTB domain containing 11	protein-coding
51330	chr12	51350701	51351100	+	0	NA	TTS (NM_007210)	TTS (NM_007210)	-4221	NM_001971	1990		NM_001971	ENSG00000139610	CELA1	ELA1	chymotrypsin like elastase 1	protein-coding
151550	chr21	46544101	46544300	+	0	NA	intron (NM_206891, intron 18 of 19)	intron (NM_206891, intron 18 of 19)	60882	NM_006272	6285		NM_006272	ENSG00000160307	S100B	NEF|S100|S100-B|S100beta	S100 calcium binding protein B	protein-coding
157178	chr22	43014801	43016100	+	0	NA	promoter-TSS (NM_001349971)	promoter-TSS (NM_001349971)	-274	NM_001349969	11252		NM_007229	ENSG00000100266	PACSIN2	SDPII	protein kinase C and casein kinase substrate in neurons 2	protein-coding
21295	chr1	204461151	204462250	+	0	NA	intron (NM_001377335, intron 7 of 35)	intron (NM_001377335, intron 7 of 35)	33105	NM_001377335	5287		NM_002646	ENSG00000133056	PIK3C2B	C2-PI3K	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding
117040	chr19	18934421	18934880	+	0	NA	intron (NM_001145721, intron 4 of 9)	intron (NM_001145721, intron 4 of 9)	4399	NM_001145724	9454		NM_004838	ENSG00000051128	HOMER3	HOMER-3|VESL3	homer scaffold protein 3	protein-coding
212858	chr7	130852051	130852350	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	24610	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
195381	chr6	36697221	36697680	+	0	NA	promoter-TSS (NM_001257357)	promoter-TSS (NM_001257357)	-376	NM_001257357	401258		NM_207498	ENSG00000255587	RAB44	RASD3|RASL13|dJ431A14.3	RAB44, member RAS oncogene family	protein-coding
207541	chr7	44832801	44833600	+	0	NA	TTS (NM_201436)	TTS (NM_201436)	14887	NM_012412	94239		NM_012412	ENSG00000105968	H2AZ2	H2A.Z-2|H2AFV|H2AV	H2A.Z variant histone 2	protein-coding
84799	chr16	31063601	31064830	+	0	NA	exon (NM_024706, exon 2 of 3)	exon (NM_024706, exon 2 of 3)	873	NM_001172669	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
169667	chr3	171614601	171614850	+	0	NA	intron (NM_001130081, intron 23 of 25)	intron (NM_001130081, intron 23 of 25)	-154317	NR_027767	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
6044	chr1	27122301	27122700	+	0	NA	intron (NM_003047, intron 1 of 11)	intron (NM_003047, intron 1 of 11)	32625	NR_046474	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
97846	chr17	44965321	44965730	+	0	NA	intron (NM_006688, intron 1 of 1)	intron (NM_006688, intron 1 of 1)	2778	NM_006688	10882		NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF|CTRP14	complement C1q like 1	protein-coding
94310	chr17	28749901	28750900	+	0	NA	3' UTR (NM_004295, exon 7 of 7)	3' UTR (NM_004295, exon 7 of 7)	6389	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
228411	chr9	99211871	99212180	+	0	NA	Intergenic	L1MA4A|LINE|L1	9917	NM_033087	85365		NM_033087	ENSG00000119523	ALG2	CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2	ALG2 alpha-1,3/1,6-mannosyltransferase	protein-coding
166714	chr3	121313171	121313330	+	0	NA	intron (NR_145516, intron 21 of 28)	SVA_E|Retroposon|SVA	232738	NM_199420	10721		NM_006596	ENSG00000051341	POLQ	PRO0327	DNA polymerase theta	protein-coding
202412	chr6	157883051	157883550	+	0	NA	intron (NM_016224, intron 4 of 17)	Tigger1|DNA|TcMar-Tigger	60054	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
28583	chr10	51699021	51700200	+	0	NA	promoter-TSS (NM_015235)	promoter-TSS (NM_015235)	-15	NM_015235	23283		NM_015235	ENSG00000177613	CSTF2T	CstF-64T	cleavage stimulation factor subunit 2 tau variant	protein-coding
173374	chr4	7908821	7909080	+	0	NA	intron (NM_001371091, intron 1 of 17)	intron (NM_001371091, intron 1 of 17)	-30051	NM_203423	389199		NM_203423	ENSG00000228919	LOC389199	-	uncharacterized LOC389199	ncRNA
55915	chr12	109744371	109744530	+	0	NA	intron (NM_032829, intron 2 of 2)	intron (NM_032829, intron 2 of 2)	29037	NR_026662	84983		NM_032897	ENSG00000255650	FAM222A-AS1	-	FAM222A antisense RNA 1	ncRNA
221481	chr8	124486871	124487030	+	0	NA	exon (NM_007218, exon 2 of 2)	exon (NM_007218, exon 2 of 2)	12070	NM_007218	11236		NM_007218	ENSG00000170881	RNF139	HRCA1|RCA1|TRC8	ring finger protein 139	protein-coding
21260	chr1	204387701	204387900	+	0	NA	Intergenic	L2a|LINE|L2	-18081	NR_027022	127841		NR_027022	ENSG00000280924	LINC00628	-	long intergenic non-protein coding RNA 628	ncRNA
3338	chr1	15432601	15433100	+	0	NA	Intergenic	Intergenic	-5593	NM_007272	11330		NM_007272	ENSG00000162438	CTRC	CLCR|ELA4	chymotrypsin C	protein-coding
135812	chr2	170180151	170180450	+	0	NA	intron (NR_045682, intron 1 of 35)	intron (NR_045682, intron 1 of 35)	2153	NR_045684	140469		NM_138995	ENSG00000071909	MYO3B	-	myosin IIIB	protein-coding
80115	chr16	2030921	2031580	+	0	NA	intron (NM_001130012, intron 2 of 6)	intron (NM_001130012, intron 2 of 6)	-2044	NM_001252073	9351		NM_004785	ENSG00000065054	NHERF2	E3KARP|NHE3RF2|NHERF-2|OCTS2|SIP-1|SIP1|SLC9A3R2|TKA-1	NHERF family PDZ scaffold protein 2	protein-coding
167469	chr3	129114771	129115330	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	6754	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
176383	chr4	88613271	88614200	+	0	NA	intron (NM_001375479, intron 4 of 25)	intron (NM_001375479, intron 4 of 25)	21255	NM_001271602	8916		NM_014606	ENSG00000138641	HERC3	-	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein-coding
13820	chr1	117618601	117619080	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	12792	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
118525	chr19	36010801	36011000	+	0	NA	exon (NM_198867, exon 5 of 7)	exon (NM_198867, exon 5 of 7)	-2087	NM_001039876	163183		NM_153233	ENSG00000181392	SYNE4	C19orf46|DFNB76|KASH4|Nesp4	spectrin repeat containing nuclear envelope family member 4	protein-coding
45953	chr11	121415501	121415700	+	0	NA	Intergenic	AluJb|SINE|Alu	-36714	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
197691	chr6	85640521	85640930	+	0	NA	intron (NM_001253771, intron 1 of 10)	intron (NM_001253771, intron 1 of 10)	726	NM_001159675	10492		NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding
164416	chr3	58584671	58584830	+	0	NA	intron (NM_001282714, intron 2 of 4)	MER51B|LTR|ERV1	2264	NM_001282713	11170		NM_007177	ENSG00000168309	FAM107A	DRR1|TU3A	family with sequence similarity 107 member A	protein-coding
41934	chr11	67299551	67300500	+	0	NA	exon (NM_001347901, exon 11 of 16)	exon (NM_001347901, exon 11 of 16)	-3505	NM_017857	54961		NM_017857	ENSG00000172830	SSH3	SSH3L	slingshot protein phosphatase 3	protein-coding
98783	chr17	48140851	48141150	+	0	NA	intron (NM_001075099, intron 11 of 12)	AluSx|SINE|Alu	15511	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
227823	chr9	93346301	93346700	+	0	NA	promoter-TSS (NR_166069)	promoter-TSS (NR_166069)	-197	NR_166069	445577		NM_001098808		FAM120A2P	C9orf129|bA165J3.3	family with sequence similarity 120A2, pseudogene	pseudo
209264	chr7	75899071	75900030	+	0	NA	Intergenic	Intergenic	-15605	NM_001382658	5447		NM_000941	ENSG00000127948	POR	CPR|CYPOR|P450R	cytochrome p450 oxidoreductase	protein-coding
70391	chr14	101951151	101952030	+	0	NA	Intergenic	AluSx|SINE|Alu	-12983	NM_001376	1778		NM_001376	ENSG00000197102	DYNC1H1	CDCBM13|CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding
226967	chr9	81217651	81217750	+	0	NA	Intergenic	L1PA4|LINE|L1	471835	NM_001303104	7088		NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1|TLE-1	TLE family member 1, transcriptional corepressor	protein-coding
236084	chrX	56772801	56774330	+	0	NA	intron (NM_001348129, intron 2 of 2)	intron (NM_001348129, intron 2 of 2)	-35981	NR_002308	442454		NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo
66297	chr14	61397521	61398280	+	0	NA	intron (NM_006255, intron 2 of 13)	intron (NM_006255, intron 2 of 13)	76457	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
147504	chr20	59175001	59175700	+	0	NA	intron (NM_178457, intron 1 of 5)	L1MDa|LINE|L1	11529	NM_178457	128611		NM_178457	ENSG00000124203	ZNF831	C20orf174	zinc finger protein 831	protein-coding
76093	chr15	72490771	72491400	+	0	NA	intron (NM_005744, intron 1 of 13)	AluSg|SINE|Alu	16755	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
23844	chr1	234675901	234676450	+	0	NA	Intergenic	L1ME3A|LINE|L1	29886	NR_125944	101927787		NR_125944	ENSG00000228044	LOC101927787	-	uncharacterized LOC101927787	ncRNA
68353	chr14	77709101	77709780	+	0	NA	intron (NM_001267863, intron 1 of 3)	Tigger11a|DNA|TcMar-Tigger	1337	NM_031210	81892		NM_031210	ENSG00000119705	SLIRP	C14orf156|DC50|PD04872	SRA stem-loop interacting RNA binding protein	protein-coding
103520	chr17	78474251	78475280	+	0	NA	intron (NM_173628, intron 54 of 80)	intron (NM_173628, intron 54 of 80)	-10145	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
213021	chr7	131025421	131025830	+	0	NA	intron (NR_109850, intron 3 of 5)	intron (NR_109850, intron 3 of 5)	81405	NR_024153	378805		NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT|PINT87aa|TISPL	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA
18177	chr1	160805871	160806850	+	0	NA	intron (NM_001261456, intron 2 of 9)	L1PB4|LINE|L1	10186	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
80476	chr16	2702371	2702530	+	0	NA	exon (NM_018992, exon 5 of 6)	exon (NM_018992, exon 5 of 6)	17774	NM_001318395	83886		NM_031948	ENSG00000172382	PRSS27	CAPH2|MPN	serine protease 27	protein-coding
185299	chr5	126602901	126603250	+	0	NA	intron (NM_032177, intron 1 of 4)	AluJb|SINE|Alu	2128	NM_032177	51808		NM_032177	ENSG00000164902	PHAX	RNUXA	phosphorylated adaptor for RNA export	protein-coding
91980	chr17	7416171	7417030	+	0	NA	intron (NM_020795, intron 6 of 6)	intron (NM_020795, intron 6 of 6)	-3724	NM_199339	374768		NM_199339	ENSG00000181323	SPEM1	C17orf83	spermatid maturation 1	protein-coding
6579	chr1	28752701	28753800	+	0	NA	intron (NM_016258, intron 4 of 4)	AluJb|SINE|Alu	16310	NM_016258	51441		NM_016258	ENSG00000198492	YTHDF2	CAHL|DF2|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein F2	protein-coding
116509	chr19	18155351	18156180	+	0	NA	non-coding (NR_073517, exon 2 of 16)	non-coding (NR_073517, exon 2 of 16)	2602	NR_162071	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
140067	chr2	231428501	231428700	+	0	NA	Intergenic	AluSg|SINE|Alu	27336	NR_002921	654321		NR_002921	ENSG00000206885	SNORA75	SNORA75A|U23	small nucleolar RNA, H/ACA box 75	snoRNA
114197	chr19	11419471	11419900	+	0	NA	promoter-TSS (NM_001035223)	promoter-TSS (NM_001035223)	-371	NM_001035223	57139		NM_001035223	ENSG00000205517	RGL3	-	ral guanine nucleotide dissociation stimulator like 3	protein-coding
154117	chr22	31105951	31106550	+	0	NA	intron (NM_080430, intron 1 of 4)	intron (NM_080430, intron 1 of 4)	1318	NM_080430	140606		NM_080430	ENSG00000198832	SELENOM	SELM|SEPM	selenoprotein M	protein-coding
106013	chr18	7966671	7966900	+	0	NA	intron (NM_001378146, intron 3 of 29)	L1PA2|LINE|L1	19910	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
219711	chr8	81000771	81000930	+	0	NA	intron (NM_018440, intron 3 of 8)	L2b|LINE|L2	111218	NM_018440	55824		NM_018440	ENSG00000076641	PAG1	CBP|PAG	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein-coding
233073	chr9	137089471	137090500	+	0	NA	intron (NM_016219, intron 3 of 12)	L2b|LINE|L2	3000	NR_045721	11253		NM_016219	ENSG00000177239	MAN1B1	ERMAN1|ERManI|MANA-ER|MRT15	mannosidase alpha class 1B member 1	protein-coding
139962	chr2	230872351	230872450	+	0	NA	intron (NM_001012514, intron 1 of 4)	intron (NM_001012514, intron 1 of 4)	7450	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
36435	chr11	4626271	4626530	+	0	NA	Intergenic	HUERS-P3b-int|LTR|ERV1	-13315	NM_001004751	390038		NM_001004751	ENSG00000197428	OR51D1	OR11-14|OR51D1Q	olfactory receptor family 51 subfamily D member 1	protein-coding
52091	chr12	54090171	54090900	+	0	NA	intron (NR_026655, intron 1 of 1)	CpG	-8712	NR_026658	100240735		NR_026658	ENSG00000291180	LOC100240735	-	uncharacterized LOC100240735	ncRNA
50659	chr12	48820171	48820800	+	0	NA	intron (NM_001206915, intron 1 of 11)	intron (NM_001206915, intron 1 of 11)	1989	NM_001206915	784		NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding
160549	chr3	30679221	30679480	+	0	NA	intron (NM_001024847, intron 6 of 7)	intron (NM_001024847, intron 6 of 7)	72749	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
98821	chr17	48392551	48392850	+	0	NA	intron (NM_001075099, intron 2 of 12)	AluSx|SINE|Alu	37514	NM_003726	8631		NM_003726	ENSG00000141293	SKAP1	HEL-S-81p|SCAP1|SKAP55	src kinase associated phosphoprotein 1	protein-coding
214947	chr7	151770421	151770680	+	0	NA	intron (NM_016203, intron 3 of 15)	MER72|LTR|ERV1	-34236	NM_001304527	51422		NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding
191994	chr6	16239671	16239830	+	0	NA	intron (NM_006877, intron 1 of 8)	intron (NM_006877, intron 1 of 8)	1163	NM_006877	2766		NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding
162827	chr3	49170251	49170350	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-1298	NM_173546	200942		NM_173546	ENSG00000185909	KLHDC8B	CHL	kelch domain containing 8B	protein-coding
229913	chr9	126614971	126616100	+	0	NA	exon (NM_001174146, exon 2 of 8)	exon (NM_001174146, exon 2 of 8)	1607	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
200790	chr6	137887921	137888200	+	0	NA	Intergenic	L1PA7|LINE|L1	-19827	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
36957	chr11	11171351	11172200	+	0	NA	Intergenic	L2b|LINE|L2	181475	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
85588	chr16	53502201	53504300	+	0	NA	promoter-TSS (NM_022476)	promoter-TSS (NM_022476)	-41	NM_022476	64400		NM_022476	ENSG00000166971	AKTIP	FT1|FTS	AKT interacting protein	protein-coding
121040	chr19	45816971	45817930	+	0	NA	intron (NM_004819, intron 23 of 26)	AluJo|SINE|Alu	-2142	NM_030785	81492		NM_030785	ENSG00000104941	RSPH6A	RSHL1|RSP4|RSP6|RSPH4B	radial spoke head 6 homolog A	protein-coding
229282	chr9	120711371	120711530	+	0	NA	intron (NM_001080497, intron 1 of 5)	L1ME3G|LINE|L1	3020	NM_001080497	1955		NM_001080497	ENSG00000106780	MEGF9	EGFL5	multiple EGF like domains 9	protein-coding
85312	chr16	49523421	49523680	+	0	NA	intron (NM_001379286, intron 7 of 7)	intron (NM_001379286, intron 7 of 7)	-4965	NR_144553	1596		NR_144553	ENSG00000260089	ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo
239069	chrY	7310651	7311550	+	0	NA	intron (NR_028062, intron 2 of 7)	MER20|DNA|hAT-Charlie	37128	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
224125	chr9	4678751	4681050	+	0	NA	promoter-TSS (NR_121597)	promoter-TSS (NR_121597)	331	NM_017913	55664		NM_017913	ENSG00000106993	CDC37L1	CDC37B|HARC	cell division cycle 37 like 1, HSP90 cochaperone	protein-coding
109067	chr18	79904551	79904850	+	0	NA	intron (NM_001146343, intron 3 of 3)	intron (NM_001146343, intron 3 of 3)	41032	NM_012283	26251		NM_012283	ENSG00000178342	KCNG2	KCNF2|KV6.2	potassium voltage-gated channel modifier subfamily G member 2	protein-coding
165429	chr3	98519171	98519800	+	0	NA	intron (NM_001040200, intron 1 of 3)	L2a|LINE|L2	3417	NM_001040181	56650		NM_019895	ENSG00000080822	CLDND1	C3orf4|GENX-3745|Z38	claudin domain containing 1	protein-coding
98128	chr17	45892721	45893250	+	0	NA	intron (NR_024559, intron 1 of 1)	AluJr|SINE|Alu	-1397	NM_016835	4137		NM_005910	ENSG00000186868	MAPT	DDPAC|FTDP-17|MAPTL|MSTD|MTBT1|MTBT2|PPND|PPP1R103|TAU|Tau-PHF6|tau-40	microtubule associated protein tau	protein-coding
217481	chr8	28936951	28937130	+	0	NA	intron (NM_001324393, intron 2 of 11)	intron (NM_001324393, intron 2 of 11)	45726	NM_001324382	79618		NM_024567	ENSG00000147421	HMBOX1	HNF1LA|HOT1|PBHNF|TAH1	homeobox containing 1	protein-coding
136287	chr2	174748171	174748330	+	0	NA	exon (NM_000079, exon 9 of 9)	exon (NM_000079, exon 9 of 9)	16222	NM_001039523	1134		NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding
206289	chr7	30026321	30027600	+	0	NA	promoter-TSS (NM_017946)	promoter-TSS (NM_017946)	-258	NR_046478	55033		NM_017946	ENSG00000106080	FKBP14	EDSKMH|EDSKSCL2|FKBP22|IPBP12	FKBP prolyl isomerase 14	protein-coding
152066	chr22	19723021	19723600	+	0	NA	promoter-TSS (NM_000407)	promoter-TSS (NM_000407)	-229	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
13075	chr1	111506751	111506850	+	0	NA	intron (NM_001081976, intron 1 of 5)	intron (NM_001081976, intron 1 of 5)	-3167	NM_020683	57413		NM_020683	ENSG00000121933	TMIGD3	AD026	transmembrane and immunoglobulin domain containing 3	protein-coding
200461	chr6	135117501	135117780	+	0	NA	Intergenic	Intergenic	-62818	NM_001145207	10767		NM_006620	ENSG00000112339	HBS1L	EF-1a|ERFS|HBS1|HSPC276|eRF3c	HBS1 like translational GTPase	protein-coding
182236	chr5	56984371	56984730	+	0	NA	Intergenic	Intergenic	-32420	NM_152622	166968		NM_152622	ENSG00000155545	MIER3	-	MIER family member 3	protein-coding
135731	chr2	169461871	169462400	+	0	NA	Intergenic	Helitron3Na_Mam|RC|Helitron	-17359	NM_152384	129880		NM_152384	ENSG00000163093	BBS5	-	Bardet-Biedl syndrome 5	protein-coding
108406	chr18	69902201	69902600	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	45473	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
64165	chr14	22920721	22920980	+	0	NA	non-coding (NR_120599, exon 1 of 2)	non-coding (NR_120599, exon 1 of 2)	1394	NR_120599	100505758		NR_120599	ENSG00000237054	PRMT5-AS1	-	PRMT5 antisense RNA 1	ncRNA
184160	chr5	95664151	95664480	+	0	NA	intron (NR_125330, intron 2 of 7)	intron (NR_125330, intron 2 of 7)	17436	NM_173362	317671		NM_173362	ENSG00000175449	RFESD	-	Rieske Fe-S domain containing	protein-coding
9870	chr1	54303101	54303300	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	66757	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
199471	chr6	118551021	118551380	+	0	NA	intron (NM_002667, intron 1 of 1)	intron (NM_002667, intron 1 of 1)	2904	NM_002667	5350		NM_002667	ENSG00000198523	PLN	CMD1P|CMH18|PLB	phospholamban	protein-coding
162545	chr3	48637521	48638280	+	0	NA	3' UTR (NM_001407, exon 35 of 35)	3' UTR (NM_001407, exon 35 of 35)	-2439	NM_001281733	65010		NM_022911	ENSG00000225697	SLC26A6	-	solute carrier family 26 member 6	protein-coding
163794	chr3	52401101	52401300	+	0	NA	TTS (NM_015512)	TTS (NM_015512)	8808	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
234208	chrX	12960871	12961400	+	0	NA	Intergenic	L1MC4|LINE|L1	-13975	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
235052	chrX	40110101	40110530	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	-12357	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
191129	chr6	4061001	4061200	+	0	NA	non-coding (NR_146783, exon 16 of 20)	non-coding (NR_146783, exon 16 of 20)	18037	NM_173563	222826		NM_173563	ENSG00000145975	FAM217A	C6orf146	family with sequence similarity 217 member A	protein-coding
88094	chr16	81517401	81517730	+	0	NA	intron (NM_030629, intron 1 of 20)	intron (NM_030629, intron 1 of 20)	-16337	NR_107008	102465840		NR_107008	ENSG00000277255	MIR7854	hsa-mir-7854	microRNA 7854	ncRNA
180011	chr5	1006771	1007700	+	0	NA	Intergenic	Intergenic	-1567	NM_033120	85409		NM_033120	ENSG00000145506	NKD2	Naked2	NKD inhibitor of WNT signaling pathway 2	protein-coding
42170	chr11	67821851	67821950	+	0	NA	Intergenic	Intergenic	-16564	NR_024249	645332		NR_024249	ENSG00000290994	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
147165	chr20	56441551	56441850	+	0	NA	intron (NM_020356, intron 2 of 5)	intron (NM_020356, intron 2 of 5)	-26885	NM_001283037	51507		NM_016407	ENSG00000022277	RTF2	C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3	replication termination factor 2	protein-coding
64190	chr14	23006571	23007930	+	0	NA	intron (NM_001130706, intron 1 of 7)	intron (NM_001130706, intron 1 of 7)	2893	NM_001130708	60686		NM_021944	ENSG00000100802	C14orf93	RTFC	chromosome 14 open reading frame 93	protein-coding
68634	chr14	89726171	89726530	+	0	NA	Intergenic	AluSx|SINE|Alu	-107185	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
1902	chr1	6454351	6455750	+	0	NA	intron (NM_031475, intron 10 of 12)	CpG	11123	NM_003790	8718		NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding
93409	chr17	18373151	18373850	+	0	NA	Intergenic	AluSz|SINE|Alu	-4278	NM_001145127	645027		NM_001145127	ENSG00000214860	EVPLL	-	envoplakin like	protein-coding
22643	chr1	223722401	223723300	+	0	NA	intron (NM_001748, intron 2 of 20)	L1MC3|LINE|L1	10311	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
164325	chr3	57803401	57804130	+	0	NA	intron (NR_165328, intron 2 of 22)	intron (NR_165328, intron 2 of 22)	46509	NM_001304421	7871		NM_007159	ENSG00000163681	SLMAP	SLAP	sarcolemma associated protein	protein-coding
48062	chr12	7106921	7107280	+	0	NA	intron (NM_001297640, intron 2 of 4)	HAL1|LINE|L1	-1208	NR_026947	283314		NR_026947	ENSG00000205885	C1RL-AS1	MATL2963	C1RL antisense RNA 1	ncRNA
212970	chr7	130970751	130970930	+	0	NA	intron (NR_109851, intron 4 of 5)	intron (NR_109851, intron 4 of 5)	57376	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
239363	chrY	19993421	19993550	+	0	NA	Intergenic	L1PA4|LINE|L1	-248546	NM_001146705	8284		NM_004653	ENSG00000012817	KDM5D	HY|HYA|JARID1D|SMCY	lysine demethylase 5D	protein-coding
47186	chr12	802421	802980	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	49777	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
97427	chr17	43527001	43527580	+	0	NA	TTS (NM_001261439)	TTS (NM_001261439)	3145	NM_001261439	2118		NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant transcription factor 4	protein-coding
112018	chr19	5042371	5042900	+	0	NA	intron (NM_001370093, intron 5 of 11)	MSTA|LTR|ERVL-MaLR	73522	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
152098	chr22	19854251	19856480	+	0	NA	promoter-TSS (NM_024627)	promoter-TSS (NM_024627)	-491	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
53036	chr12	57609801	57610000	+	0	NA	promoter-TSS (NM_001111270)	promoter-TSS (NM_001111270)	-216	NM_001111270	115557		NM_133483	ENSG00000240771	ARHGEF25	GEFT|p63RhoGEF	Rho guanine nucleotide exchange factor 25	protein-coding
101891	chr17	74356501	74357450	+	0	NA	exon (NM_001080466, exon 3 of 3)	exon (NM_001080466, exon 3 of 3)	4893	NM_001080466	388419		NM_001080466	ENSG00000204347	BTBD17	BTBD17A|LGALS3BPL|TANGO10A	BTB domain containing 17	protein-coding
129312	chr2	68714921	68715300	+	0	NA	Intergenic	Intergenic	-19701	NM_001364819	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
205957	chr7	26154071	26154950	+	0	NA	intron (NM_004289, intron 1 of 3)	intron (NM_004289, intron 1 of 3)	2312	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
135959	chr2	172084521	172085800	+	0	NA	promoter-TSS (NM_001038493)	promoter-TSS (NM_001038493)	-347	NM_001038493	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
178046	chr4	139655071	139655350	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-10558	NM_001204367	4258		NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
15157	chr1	148951701	148953660	+	0	NA	5' UTR (NM_001002811, exon 1 of 19)	5' UTR (NM_001002811, exon 1 of 19)	223	NM_001350520	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
144863	chr20	36902371	36902730	+	0	NA	intron (NM_001363733, intron 13 of 15)	L2|LINE|L2	26412	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
16088	chr1	153542071	153542630	+	0	NA	promoter-TSS (NM_002962)	promoter-TSS (NM_002962)	-541	NM_002962	6276		NM_002962	ENSG00000196420	S100A5	S100D	S100 calcium binding protein A5	protein-coding
7593	chr1	35190821	35191150	+	0	NA	exon (NM_005066, exon 3 of 10)	exon (NM_005066, exon 3 of 10)	2160	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
114222	chr19	11463351	11464030	+	0	NA	intron (NM_001420, intron 3 of 6)	AluSg|SINE|Alu	17356	NM_032281	1995		NM_001420	ENSG00000196361	ELAVL3	HUC|HUCL|PLE21	ELAV like RNA binding protein 3	protein-coding
163693	chr3	52256551	52257250	+	0	NA	3' UTR (NM_025222, exon 9 of 9)	3' UTR (NM_025222, exon 9 of 9)	10733	NM_001122870	132160		NM_144641	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein-coding
160988	chr3	37245951	37246500	+	0	NA	intron (NM_001172713, intron 1 of 22)	AluSx|SINE|Alu	-2030	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
44245	chr11	99020651	99020950	+	0	NA	promoter-TSS (NM_014361)	promoter-TSS (NM_014361)	-149	NM_014361	53942		NM_014361	ENSG00000149972	CNTN5	HNB-2s|NB-2	contactin 5	protein-coding
33061	chr10	110875601	110876500	+	0	NA	exon (NM_001199492, exon 2 of 12)	exon (NM_001199492, exon 2 of 12)	4122	NM_014456	27250		NM_014456	ENSG00000150593	PDCD4	H731	programmed cell death 4	protein-coding
119185	chr19	39425651	39425830	+	0	NA	3' UTR (NM_001351693, exon 20 of 20)	3' UTR (NM_001351693, exon 20 of 20)	10209	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
19253	chr1	172674751	172675880	+	0	NA	Intergenic	Intergenic	16212	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
228579	chr9	104747221	104748500	+	0	NA	intron (NM_001329570, intron 1 of 4)	CpG	177	NM_001329570	25934		NM_015469	ENSG00000136783	NIPSNAP3A	HSPC299|NIPSNAP4|TASSC	nipsnap homolog 3A	protein-coding
233379	chr9	137516151	137516830	+	0	NA	intron (NM_001098537, intron 11 of 34)	intron (NM_001098537, intron 11 of 34)	33912	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
135609	chr2	168136321	168136780	+	0	NA	intron (NM_013233, intron 8 of 17)	intron (NM_013233, intron 8 of 17)	111045	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
205607	chr7	22103671	22104050	+	0	NA	Intergenic	Intergenic	89885	NM_001367601	9771		NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|MRGEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding
103377	chr17	78136001	78136750	+	0	NA	intron (NM_152468, intron 9 of 15)	AluJb|SINE|Alu	-3948	NM_007267	11322		NM_007267	ENSG00000141524	TMC6	EV1|EVER1|EVIN1|LAK-4P|TNRC6C-AS1|lnc	transmembrane channel like 6	protein-coding
99389	chr17	49985901	49986100	+	0	NA	Intergenic	Intergenic	9224	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
236317	chrX	68827671	68828200	+	0	NA	Intergenic	Intergenic	-1086	NM_004429	1947		NM_004429	ENSG00000090776	EFNB1	CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2	ephrin B1	protein-coding
65425	chr14	50871821	50872480	+	0	NA	promoter-TSS (NM_181533)	promoter-TSS (NM_181533)	-10	NM_181533	145447		NM_181533	ENSG00000131969	ABHD12B	BEM46L3|C14orf29|c14_5314	abhydrolase domain containing 12B	protein-coding
106319	chr18	12911021	12911750	+	0	NA	Intergenic	CpG	-27050	NM_080422	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
70856	chr14	103707671	103708430	+	0	NA	intron (NM_001371232, intron 5 of 9)	intron (NM_001371232, intron 5 of 9)	7401	NM_005432	7517		NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding
69759	chr14	99137521	99138450	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	134212	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
65373	chr14	50599951	50600150	+	0	NA	intron (NM_181598, intron 6 of 12)	intron (NM_181598, intron 6 of 12)	39905	NM_015915	51062		NM_015915	ENSG00000198513	ATL1	AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1	atlastin GTPase 1	protein-coding
40557	chr11	64331271	64332500	+	0	NA	Intergenic	L2|LINE|L2	-8319	NM_032251	283234		NM_032251	ENSG00000168071	CCDC88B	BRLZ|CCDC88|HKRP3|gipie	coiled-coil domain containing 88B	protein-coding
49648	chr12	28447751	28447850	+	0	NA	intron (NM_001352086, intron 11 of 15)	(GGGGA)n|Simple_repeat|Simple_repeat	-257062	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
17478	chr1	156716121	156716380	+	0	NA	Intergenic	L2|LINE|L2	-10434	NM_001199723	1382		NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding
223642	chr8	144341801	144342250	+	0	NA	Intergenic	AluSg7|SINE|Alu	-5543	NM_031309	83482		NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding
63944	chr14	22084401	22084800	+	0	NA	Intergenic	Intergenic	348153	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
55630	chr12	107059351	107059450	+	0	NA	intron (NM_004075, intron 1 of 12)	AluJo|SINE|Alu	34149	NM_004075	1407		NM_004075	ENSG00000008405	CRY1	DSPD|PHLL1	cryptochrome circadian regulator 1	protein-coding
190274	chr5	179534321	179535100	+	0	NA	intron (NM_001305388, intron 3 of 5)	L1ME2z|LINE|L1	12253	NM_001142306	285679		NM_001013718	ENSG00000204661	C5orf60	-	chromosome 5 open reading frame 60	ncRNA
174428	chr4	39469301	39469750	+	0	NA	intron (NM_194451, intron 7 of 9)	intron (NM_194451, intron 7 of 9)	10469	NM_001278590	11019		NM_006859	ENSG00000121897	LIAS	HGCLAS|HUSSY-01|LAS|LIP1|LS|PDHLD	lipoic acid synthetase	protein-coding
74921	chr15	63678021	63678480	+	0	NA	exon (NM_003922, exon 37 of 78)	exon (NM_003922, exon 37 of 78)	-77423	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
158816	chr3	9737551	9737850	+	0	NA	intron (NR_160918, intron 2 of 14)	intron (NR_160918, intron 2 of 14)	5950	NM_004634	7862		NM_004634	ENSG00000156983	BRPF1	BR140|IDDDFP	bromodomain and PHD finger containing 1	protein-coding
60404	chr13	40965301	40965900	+	0	NA	intron (NM_001370329, intron 2 of 9)	AluSx|SINE|Alu	16682	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
118896	chr19	38696001	38696200	+	0	NA	intron (NM_004924, intron 1 of 20)	MIR|SINE|MIR	48374	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
56582	chr12	117192321	117192580	+	0	NA	Intergenic	MIR|SINE|MIR	-1980	NM_033624	23014		NM_015002	ENSG00000135108	FBXO21	FBX21	F-box protein 21	protein-coding
27211	chr10	28610051	28610350	+	0	NA	intron (NM_100486, intron 7 of 12)	AluSq|SINE|Alu	-67321	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
231399	chr9	130938551	130938650	+	0	NA	exon (NM_001145106, exon 2 of 8)	exon (NM_001145106, exon 2 of 8)	468	NM_001145106	84929		NM_032843	ENSG00000130720	FIBCD1	-	fibrinogen C domain containing 1	protein-coding
170143	chr3	183445971	183446330	+	0	NA	Intergenic	Intergenic	-1458	NR_038302	100505687		NR_038301	ENSG00000291106	SNHG33	LINC00888|PAINT	small nucleolar RNA host gene 33	ncRNA
101397	chr17	67365821	67367400	+	0	NA	promoter-TSS (NM_001316341)	promoter-TSS (NM_001316341)	-33	NM_174871	5718		NM_002816	ENSG00000197170	PSMD12	Rpn5|STISS|p55	proteasome 26S subunit, non-ATPase 12	protein-coding
57999	chr12	124336651	124336750	+	0	NA	TTS (NR_106940)	TTS (NR_106940)	542	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA
94049	chr17	27331771	27333490	+	0	NA	Intergenic	Intergenic	38516	NM_001348350	26118		NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding
6829	chr1	31012801	31013000	+	0	NA	intron (NM_014676, intron 3 of 21)	intron (NM_014676, intron 3 of 21)	-44663	NR_003066	692200		NR_003066		SNORD103C	HBII-251|SNORD85	small nucleolar RNA, C/D box 103C	snoRNA
49426	chr12	24398601	24398850	+	0	NA	intron (NM_152989, intron 2 of 17)	Arthur1B|DNA|hAT-Tip100	163766	NM_152989	6660		NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box transcription factor 5	protein-coding
158531	chr3	3189451	3190150	+	0	NA	Intergenic	L2c|LINE|L2	-10083	NM_001173482	51185		NM_016302	ENSG00000113851	CRBN	MRT2|MRT2A	cereblon	protein-coding
99187	chr17	49490121	49490380	+	0	NA	Intergenic	Intergenic	-5043	NM_002507	4804		NM_002507	ENSG00000064300	NGFR	CD271|Gp80-LNGFR|TNFRSF16|p75(NTR)|p75NTR	nerve growth factor receptor	protein-coding
200338	chr6	133958851	133959580	+	0	NA	intron (NM_004865, intron 1 of 6)	AluSz6|SINE|Alu	5991	NM_004865	9519		NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding
95076	chr17	32936851	32937280	+	0	NA	intron (NM_001033504, intron 5 of 6)	intron (NM_001033504, intron 5 of 6)	8912	NM_015544	26022		NM_015544	ENSG00000006042	TMEM98	TADA1	transmembrane protein 98	protein-coding
161673	chr3	43348901	43349380	+	0	NA	non-coding (NR_046757, exon 3 of 3)	non-coding (NR_046757, exon 3 of 3)	2822	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
148530	chr20	64106101	64106600	+	0	NA	exon (NM_005286, exon 2 of 2)	exon (NM_005286, exon 2 of 2)	1215	NM_005286	2832		NM_005286	ENSG00000125522	NPBWR2	GPR8	neuropeptides B and W receptor 2	protein-coding
134838	chr2	148647271	148647830	+	0	NA	intron (NM_015630, intron 1 of 13)	AluSq2|SINE|Alu	2799	NM_015630	26122		NM_015630	ENSG00000135999	EPC2	EPC-LIKE	enhancer of polycomb homolog 2	protein-coding
93670	chr17	19233621	19233950	+	0	NA	Intergenic	Intergenic	-3592	NM_014964	22905		NM_014964	ENSG00000072134	EPN2	EHB21	epsin 2	protein-coding
13493	chr1	114722721	114723380	+	0	NA	intron (NM_001242891, intron 17 of 20)	AluSx3|SINE|Alu	-6279	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
151886	chr22	18851971	18853080	+	0	NA	non-coding (NR_135922, exon 2 of 6)	non-coding (NR_135922, exon 2 of 6)	2407	NR_135922	102725072		NR_135922	ENSG00000293159	POM121L15P	-	POM121 transmembrane nucleoporin like 15, pseudogene	pseudo
69279	chr14	93072521	93073180	+	0	NA	TTS (NR_002808)	TTS (NR_002808)	5398	NR_002808	319085		NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA
1617	chr1	3683971	3684130	+	0	NA	intron (NM_001204185, intron 3 of 12)	intron (NM_001204185, intron 3 of 12)	-6622	NM_001204190	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
236536	chrX	72125401	72125750	+	0	NA	intron (NM_001013627, intron 1 of 7)	MIR3|SINE|MIR	6340	NM_001024455	340526		NM_001024455	ENSG00000242732	RTL5	6430402L03Rik|MAR5|MART5|RGAG4|SIRH8	retrotransposon Gag like 5	protein-coding
120627	chr19	45059171	45060080	+	0	NA	intron (NM_001278439, intron 7 of 19)	intron (NM_001278439, intron 7 of 19)	-16002	NM_001319055	79760		NM_024707	ENSG00000142252	GEMIN7	SIP3	gem nuclear organelle associated protein 7	protein-coding
95283	chr17	35518271	35518950	+	0	NA	intron (NM_001363830, intron 2 of 4)	L1PA8|LINE|L1	19251	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
56318	chr12	112716421	112716800	+	0	NA	intron (NM_001347952, intron 1 of 21)	MLT1J|LTR|ERVL-MaLR	-21434	NR_031631	100302227		NR_031631	ENSG00000283507	MIR1302-1	MIRN1302-1|hsa-mir-1302-1	microRNA 1302-1	ncRNA
215114	chr7	155338501	155339530	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	28918	NR_103545	338436		NR_103545	ENSG00000204960	BLACE	-	B cell acute lymphoblastic leukemia expressed	ncRNA
103871	chr17	79751921	79752550	+	0	NA	Intergenic	Intergenic	21292	NM_178543	339221		NM_178543	ENSG00000182156	ENPP7	ALK-SMase|E-NPP 7|NPP-7|NPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
169648	chr3	171453171	171453550	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	7045	NM_015028	23043		NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding
160576	chr3	30708471	30708630	+	0	NA	Intergenic	MER39B|LTR|ERV1	101949	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
15359	chr1	150066901	150068300	+	0	NA	promoter-TSS (NM_007259)	promoter-TSS (NM_007259)	-176	NM_001279354	11311		NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding
11351	chr1	89611601	89612650	+	0	NA	Intergenic	MIR|SINE|MIR	20769	NR_033981	400761		NR_033981	ENSG00000231999	LRRC8C-DT	-	LRRC8C divergent transcript	ncRNA
19773	chr1	182143221	182143630	+	0	NA	Intergenic	Intergenic	-81713	NM_001009992	127665		NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
236811	chrX	79165271	79165430	+	0	NA	intron (NM_032553, intron 2 of 2)	intron (NM_032553, intron 2 of 2)	20662	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
181707	chr5	50663171	50663330	+	0	NA	Intergenic	Intergenic	-2681	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
222121	chr8	131916501	131917080	+	0	NA	promoter-TSS (NM_001323556)	promoter-TSS (NM_001323556)	17	NM_001323557	23167		NM_015137	ENSG00000132294	EFR3A	-	EFR3 homolog A	protein-coding
187066	chr5	140131321	140131580	+	0	NA	Intergenic	Intergenic	5513	NM_001007189	492311		NM_001007189	ENSG00000182700	IGIP	C5orf53	IgA inducing protein	protein-coding
208122	chr7	59529201	59529350	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	2079098	NM_001159279	441234		NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
155944	chr22	39680921	39681180	+	0	NA	exon (NM_021096, exon 34 of 37)	exon (NM_021096, exon 34 of 37)	110297	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
70021	chr14	100089701	100090300	+	0	NA	intron (NM_016337, intron 2 of 13)	L1ME3|LINE|L1	19514	NR_039601	100616247		NR_039601	ENSG00000265154	MIR151B	-	microRNA 151b	ncRNA
205365	chr7	13874801	13875080	+	0	NA	Intergenic	L3|LINE|CR1	111574	NM_001163150	2115		NM_004956	ENSG00000006468	ETV1	ER81	ETS variant transcription factor 1	protein-coding
76475	chr15	74866921	74867250	+	0	NA	intron (NM_001320778, intron 1 of 9)	AluSx4|SINE|Alu	6280	NM_005697	10066		NM_005697	ENSG00000140497	SCAMP2	-	secretory carrier membrane protein 2	protein-coding
3895	chr1	17055971	17056350	+	0	NA	Intergenic	Intergenic	-2128	NM_003000	6390		NM_003000	ENSG00000117118	SDHB	CWS2|IP|MC2DN4|PGL4|PPGL4|SDH|SDH1|SDH2|SDHIP	succinate dehydrogenase complex iron sulfur subunit B	protein-coding
166155	chr3	111593671	111594180	+	0	NA	exon (NM_024508, exon 2 of 2)	exon (NM_024508, exon 2 of 2)	1421	NM_024508	79413		NM_024508	ENSG00000177494	ZBED2	-	zinc finger BED-type containing 2	protein-coding
184019	chr5	91283751	91284050	+	0	NA	Intergenic	LTR54B|LTR|ERV1	30502	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
37316	chr11	14773801	14774080	+	0	NA	intron (NM_001363569, intron 2 of 15)	L1MEg|LINE|L1	117731	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
34840	chr11	311151	311730	+	0	NA	Intergenic	Intergenic	-2600	NM_003641	8519		NM_003641	ENSG00000185885	IFITM1	9-27|CD225|DSPA2a|IFI17|LEU13	interferon induced transmembrane protein 1	protein-coding
188959	chr5	161546571	161547050	+	0	NA	promoter-TSS (NM_001371727)	promoter-TSS (NM_001371727)	-85	NM_001371727	2561		NM_000813	ENSG00000145864	GABRB2	DEE92|ICEE2	gamma-aminobutyric acid type A receptor subunit beta2	protein-coding
157236	chr22	43321001	43321200	+	0	NA	intron (NM_173050, intron 2 of 21)	(GGAACC)n|Simple_repeat|Simple_repeat	22272	NM_173050	80274		NM_152514	ENSG00000159307	SCUBE1	-	signal peptide, CUB domain and EGF like domain containing 1	protein-coding
25072	chr10	3826901	3827500	+	0	NA	Intergenic	Intergenic	-6750	NR_134490	105376365		NR_134490	ENSG00000230573	LINC02639	-	long intergenic non-protein coding RNA 2639	ncRNA
76323	chr15	74397351	74398100	+	0	NA	Intergenic	Intergenic	13707	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
167745	chr3	132029351	132029550	+	0	NA	intron (NM_153429, intron 2 of 16)	intron (NM_153429, intron 2 of 16)	5992	NM_130808	131034		NM_130808	ENSG00000196353	CPNE4	COPN4|CPN4	copine 4	protein-coding
90949	chr17	2635471	2635830	+	0	NA	intron (NM_000430, intron 1 of 10)	AluJo|SINE|Alu	41996	NM_000430	5048		NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding
195702	chr6	38702071	38703750	+	0	NA	intron (NM_006708, intron 1 of 5)	CpG	235	NM_006708	2739		NM_006708	ENSG00000124767	GLO1	GLOD1|GLYI|HEL-S-74	glyoxalase I	protein-coding
39444	chr11	60934471	60935030	+	0	NA	exon (NM_178031, exon 9 of 11)	exon (NM_178031, exon 9 of 11)	10290	NM_178031	54972		NM_017870	ENSG00000006118	TMEM132A	GBP|HSPA5BP1	transmembrane protein 132A	protein-coding
77085	chr15	78909651	78910250	+	0	NA	Intergenic	Intergenic	35096	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
193038	chr6	28507121	28507580	+	0	NA	intron (NM_182701, intron 2 of 4)	intron (NM_182701, intron 2 of 4)	8443	NM_182701	257202		NM_182701	ENSG00000198704	GPX6	GPX5p|GPXP3|GPx-6|GSHPx-6|dJ1186N24|dJ1186N24.1	glutathione peroxidase 6	protein-coding
178373	chr4	146487771	146487930	+	0	NA	intron (NR_133924, intron 4 of 9)	FLAM_C|SINE|Alu	34090	NM_001317816	84068		NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7|SSASKS	solute carrier family 10 member 7	protein-coding
188609	chr5	157193351	157194830	+	0	NA	intron (NM_005546, intron 1 of 16)	intron (NM_005546, intron 1 of 16)	13250	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
52321	chr12	54960471	54961030	+	0	NA	intron (NR_147064, intron 10 of 11)	MER5A1|DNA|hAT-Charlie	12982	NM_001261844	9840		NM_014796	ENSG00000135426	TESPA1	HSPC257|ITPRID3|KIAA0748	thymocyte expressed, positive selection associated 1	protein-coding
210695	chr7	100574571	100575030	+	0	NA	promoter-TSS (NM_001348680)	promoter-TSS (NM_001348680)	419	NM_001289933								
139134	chr2	218998401	218998930	+	0	NA	Intergenic	Intergenic	3043	NR_029867	494324		NR_029867	ENSG00000198973	MIR375	MIRN375|hsa-mir-375|miRNA375|mir-375	microRNA 375	ncRNA
118437	chr19	35848121	35848780	+	0	NA	intron (NM_004646, intron 9 of 28)	intron (NM_004646, intron 9 of 28)	4054	NM_004646	4868		NM_004646	ENSG00000161270	NPHS1	CNF|NPHN|nephrin	NPHS1 adhesion molecule, nephrin	protein-coding
161774	chr3	44983071	44983650	+	0	NA	intron (NR_023353, intron 1 of 6)	MIRb|SINE|MIR	7111	NR_023353	23016		NM_015004	ENSG00000075914	EXOSC7	EAP1|RRP42|Rrp42p|hRrp42p|p8	exosome component 7	protein-coding
88968	chr16	87860301	87861200	+	0	NA	intron (NM_003486, intron 1 of 9)	intron (NM_003486, intron 1 of 9)	6854	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
29000	chr10	63387751	63387850	+	0	NA	intron (NM_001322258, intron 1 of 24)	AluY|SINE|Alu	-14752	NR_031566	100302150		NR_031566	ENSG00000221063	MIR1296	MIRN1296|hsa-mir-1296|mir-1296	microRNA 1296	ncRNA
169960	chr3	179175101	179175300	+	0	NA	intron (NM_006218, intron 1 of 20)	HAL1|LINE|L1	26843	NM_006218	5290		NM_006218	ENSG00000121879	PIK3CA	CCM4|CLAPO|CLOVE|CWS5|HMH|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding
96707	chr17	41529171	41529780	+	0	NA	Intergenic	Intergenic	-1167	NM_002276	3880		NM_002276	ENSG00000171345	KRT19	CK19|K19|K1CS	keratin 19	protein-coding
61505	chr13	52738871	52739450	+	0	NA	exon (NM_007015, exon 2 of 7)	exon (NM_007015, exon 2 of 7)	660	NM_007015	11061		NM_007015	ENSG00000136110	CNMD	BRICD3|CHM-I|CHM1|LECT1|MYETS1	chondromodulin	protein-coding
187098	chr5	140344921	140345400	+	0	NA	intron (NM_001945, intron 2 of 5)	intron (NM_001945, intron 2 of 5)	1443	NM_001945	1839		NM_001945	ENSG00000113070	HBEGF	DTR|DTS|DTSF|HEGFL	heparin binding EGF like growth factor	protein-coding
216035	chr8	9577371	9577750	+	0	NA	intron (NM_003747, intron 1 of 26)	MSTA|LTR|ERVL-MaLR	21648	NM_003747	8658		NM_003747	ENSG00000173273	TNKS	ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5	tankyrase	protein-coding
196212	chr6	42776321	42776580	+	0	NA	intron (NM_001318819, intron 1 of 13)	AluJb|SINE|Alu	-7046	NR_134654	401261		NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA
180884	chr5	33935751	33936380	+	0	NA	promoter-TSS (NM_016568)	promoter-TSS (NM_016568)	-321	NM_016568	51289		NM_016568	ENSG00000182631	RXFP3	GPCR135|RLN3R1|RXFPR3|SALPR	relaxin family peptide receptor 3	protein-coding
72447	chr15	32029501	32029700	+	0	NA	promoter-TSS (NM_000746).6	promoter-TSS (NM_000746).6	-883	NR_046324	1139		NM_000746	ENSG00000175344	CHRNA7	CHRNA7-2|NACHRA7	cholinergic receptor nicotinic alpha 7 subunit	protein-coding
184313	chr5	96897051	96897350	+	0	NA	intron (NM_001130140, intron 9 of 18)	intron (NM_001130140, intron 9 of 18)	20700	NM_022350	64167		NM_022350	ENSG00000164308	ERAP2	L-RAP|LRAP	endoplasmic reticulum aminopeptidase 2	protein-coding
28544	chr10	50552751	50553350	+	0	NA	intron (NM_147156, intron 2 of 10)	MLT1D|LTR|ERVL-MaLR	70906	NM_147156	259230		NM_147156	ENSG00000198964	SGMS1	MOB|MOB1|SMS1|TMEM23|hmob33	sphingomyelin synthase 1	protein-coding
142603	chr20	5587521	5587780	+	0	NA	intron (NM_019593, intron 4 of 19)	AluSg|SINE|Alu	23356	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
86855	chr16	67935071	67936200	+	0	NA	exon (NM_002801, exon 5 of 8)	exon (NM_002801, exon 5 of 8)	1215	NM_002801	5699		NM_002801	ENSG00000205220	PSMB10	LMP10|MECL1|PRAAS5|beta2i	proteasome 20S subunit beta 10	protein-coding
226355	chr9	69831551	69831850	+	0	NA	intron (NR_131757, intron 1 of 2)	L2c|LINE|L2	10883	NR_131756	138255		NM_001010940	ENSG00000204711	CFAP95	C9orf135	cilia and flagella associated protein 95	protein-coding
62533	chr13	99566201	99567050	+	0	NA	Intergenic	Intergenic	-10487	NR_126390	104355149		NR_126390		LINC01039	-	long intergenic non-protein coding RNA 1039	ncRNA
207416	chr7	44455801	44456450	+	0	NA	intron (NM_015332, intron 2 of 5)	HAL1|LINE|L1	34533	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
162321	chr3	47475071	47476700	+	0	NA	promoter-TSS (NM_012235)	promoter-TSS (NM_012235)	56	NM_012235	22937		NM_012235	ENSG00000114650	SCAP	-	SREBF chaperone	protein-coding
196983	chr6	53231571	53232130	+	0	NA	Intergenic	Intergenic	-45143	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
134467	chr2	143238501	143238900	+	0	NA	intron (NM_018460, intron 5 of 13)	L1PA11|LINE|L1	109281	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
204469	chr7	4717051	4717500	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	34980	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
163288	chr3	50325971	50326830	+	0	NA	exon (NM_007275, exon 2 of 3)	exon (NM_007275, exon 2 of 3)	1838	NM_007275	11334		NM_007275	ENSG00000114383	TUSC2	C3orf11|FUS1|PAP|PDAP2	tumor suppressor 2, mitochondrial calcium regulator	protein-coding
228546	chr9	101486701	101487180	+	0	NA	promoter-TSS (NM_001303108)	promoter-TSS (NM_001303108)	-170	NM_001303108	84302		NM_032342	ENSG00000165152	PGAP4	C9orf125|TMEM246	post-GPI attachment to proteins GalNAc transferase 4	protein-coding
233346	chr9	137449801	137452100	+	0	NA	promoter-TSS (NR_106964)	promoter-TSS (NR_106964)	-864	NR_106964	102466223		NR_106964	ENSG00000284317	MIR7114	hsa-mir-7114	microRNA 7114	ncRNA
138299	chr2	203722371	203722630	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	15861	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
208297	chr7	66073921	66074600	+	0	NA	Intergenic	Intergenic	-1559	NM_001024943	435		NM_000048	ENSG00000126522	ASL	ASAL	argininosuccinate lyase	protein-coding
79308	chr16	555151	556380	+	0	NA	Intergenic	Intergenic	-4629	NM_145270	146325		NM_145270	ENSG00000161992	PRR35	C16orf11|LA16c-366D1.2	proline rich 35	protein-coding
239110	chrY	11292651	11293100	+	0	NA	Intergenic	Intergenic	1128715	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3597	chr1	16235821	16236500	+	0	NA	intron (NM_030907, intron 1 of 4)	intron (NM_030907, intron 1 of 4)	1023	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
139616	chr2	225041701	225043400	+	0	NA	promoter-TSS (NM_014689)	promoter-TSS (NM_014689)	-82	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
164541	chr3	63952451	63952830	+	0	NA	intron (NM_001177387, intron 4 of 12)	intron (NM_001177387, intron 4 of 12)	-15154	NM_001128149	6314		NM_000333	ENSG00000163635	ATXN7	ADCAII|OPCA3|SCA7|SGF73	ataxin 7	protein-coding
175981	chr4	81506151	81506250	+	0	NA	Intergenic	Intergenic	-34293	NM_001300735	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
178079	chr4	140123871	140124230	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-3965	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
142953	chr20	19348001	19348430	+	0	NA	intron (NM_020689, intron 2 of 16)	intron (NM_020689, intron 2 of 16)	-63619	NR_024564	100130264		NR_024564	ENSG00000179447	SLC24A3-AS1	-	SLC24A3 antisense RNA 1	ncRNA
193974	chr6	31723151	31724200	+	0	NA	exon (NM_138274, exon 2 of 4)	exon (NM_138274, exon 2 of 4)	302	NM_138272	80739		NM_025260	ENSG00000204420	MPIG6B	C6orf25|G6b|G6b-B|NG31|THAMY	megakaryocyte and platelet inhibitory receptor G6b	protein-coding
212699	chr7	129773771	129774130	+	0	NA	TTS (NR_029615)	TTS (NR_029615)	819	NR_029512	407053		NR_029512	ENSG00000199158	MIR96	DFNA50|MIRN96|hsa-mir-96|miR-96|miRNA96	microRNA 96	ncRNA
111401	chr19	3764921	3765300	+	0	NA	intron (NM_172251, intron 1 of 2)	intron (NM_172251, intron 1 of 2)	2428	NM_172251	116541		NM_172251	ENSG00000183617	MRPL54	L54mt|MRP-L54|mL54	mitochondrial ribosomal protein L54	protein-coding
12268	chr1	100466371	100466730	+	0	NA	intron (NM_001319210, intron 9 of 16)	intron (NM_001319210, intron 9 of 16)	-71589	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
121454	chr19	47042351	47043150	+	0	NA	intron (NM_002517, intron 10 of 11)	intron (NM_002517, intron 10 of 11)	5874	NM_017854	54958		NM_017854	ENSG00000130748	TMEM160	-	transmembrane protein 160	protein-coding
9520	chr1	51433471	51434050	+	0	NA	intron (NM_001981, intron 12 of 24)	intron (NM_001981, intron 12 of 24)	-11665	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
155022	chr22	37425771	37426900	+	0	NA	intron (NM_052906, intron 1 of 2)	intron (NM_052906, intron 1 of 2)	1135	NR_110512	114794		NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding
28052	chr10	43262321	43262830	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	4490	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
67440	chr14	70657001	70657580	+	0	NA	intron (NM_015351, intron 1 of 2)	intron (NM_015351, intron 1 of 2)	15374	NM_015351	23508		NM_015351	ENSG00000133985	TTC9	TTC9A	tetratricopeptide repeat domain 9	protein-coding
108094	chr18	61893901	61895400	+	0	NA	Intergenic	CpG	-1643	NM_173557	220441		NM_173557	ENSG00000176641	RNF152	-	ring finger protein 152	protein-coding
5457	chr1	25621051	25621350	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	4409	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
118868	chr19	38657821	38658280	+	0	NA	intron (NM_004924, intron 1 of 20)	intron (NM_004924, intron 1 of 20)	10401	NM_004924	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
36612	chr11	6754421	6754680	+	0	NA	Intergenic	MER66B|LTR|ERV1	14407	NM_001004490	338755		NM_001004490	ENSG00000188124	OR2AG2	OR11-76|OR2AG2P	olfactory receptor family 2 subfamily AG member 2	protein-coding
11896	chr1	93180201	93182030	+	0	NA	promoter-TSS (NM_016040)	promoter-TSS (NM_016040)	391	NM_001378204	343099		NM_206886	ENSG00000122483	CCDC18	NY-SAR-41	coiled-coil domain containing 18	protein-coding
93521	chr17	19021321	19022150	+	0	NA	3' UTR (NM_001270648, exon 14 of 14)	3' UTR (NM_001270648, exon 14 of 14)	-16971	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
227241	chr9	89314771	89314930	+	0	NA	intron (NM_001827, intron 1 of 2)	MLT1J|LTR|ERVL-MaLR	2625	NR_036108	100422936		NR_036108	ENSG00000265112	MIR3153	mir-3153	microRNA 3153	ncRNA
142704	chr20	8161551	8161950	+	0	NA	intron (NM_015192, intron 2 of 31)	MER5B|DNA|hAT-Charlie	29484	NM_182734	23236		NM_015192	ENSG00000182621	PLCB1	DEE12|EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B	phospholipase C beta 1	protein-coding
231093	chr9	129797901	129798150	+	0	NA	Intergenic	AluSz|SINE|Alu	-5118	NR_134027	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
151507	chr21	46406171	46406330	+	0	NA	intron (NM_006031, intron 27 of 46)	intron (NM_006031, intron 27 of 46)	-52641	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
209786	chr7	87590401	87590980	+	0	NA	intron (NM_001348946, intron 3 of 27)	L2a|LINE|L2	10194	NM_001348946	5243		NM_000927	ENSG00000085563	ABCB1	ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1|p-170	ATP binding cassette subfamily B member 1	protein-coding
88324	chr16	84423501	84423750	+	0	NA	intron (NM_001291454, intron 7 of 23)	MLT1J2|LTR|ERVL-MaLR	17037	NM_001291454	9914		NM_014861	ENSG00000064270	ATP2C2	SPCA2	ATPase secretory pathway Ca2+ transporting 2	protein-coding
18379	chr1	161385571	161385730	+	0	NA	Intergenic	AluJb|SINE|Alu	-17774	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
123118	chr19	51701451	51701750	+	0	NA	intron (NR_024330, intron 1 of 7)	intron (NR_024330, intron 1 of 7)	-8144	NR_108100	102238594		NR_108100	ENSG00000269959	SPACA6-AS1	LINC01129|SPACA6P-AS	SPACA6 antisense RNA 1	ncRNA
141928	chr20	1216471	1216700	+	0	NA	Intergenic	LTR13A|LTR|ERVK	-9459	NM_001384357	642636		NM_001136566	ENSG00000244588	RAD21L1	RAD21L|dJ545L17.2	RAD21 cohesin complex component like 1	protein-coding
73488	chr15	43744351	43744700	+	0	NA	non-coding (NR_002318, exon 3 of 4)	non-coding (NR_002318, exon 3 of 4)	1773	NR_002318	440278		NR_002318	ENSG00000291053	CATSPER2P1	CATSPER2B	CATSPER2 pseudogene 1	pseudo
215636	chr8	206421	207190	+	0	NA	Intergenic	TAR1|Satellite|telo	-25332	NM_001287255	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
14182	chr1	121528721	121529380	+	0	NA	intron (NR_003955, intron 1 of 7)	intron (NR_003955, intron 1 of 7)	9938	NR_003955	647121		NR_003955	ENSG00000291141	EMBP1	-	embigin pseudogene 1	pseudo
1939	chr1	6494951	6495530	+	0	NA	intron (NM_198681, intron 2 of 21)	intron (NM_198681, intron 2 of 21)	1991	NM_001265592	57449		NM_020631	ENSG00000171680	PLEKHG5	ARHGEF45|CMTRIC|DSMA4|GEF720|HMNR4|Syx|Tech	pleckstrin homology and RhoGEF domain containing G5	protein-coding
219442	chr8	72479851	72479950	+	0	NA	Intergenic	L1PA2|LINE|L1	-57325	NM_004770	9312		NM_004770	ENSG00000182674	KCNB2	KV2.2	potassium voltage-gated channel subfamily B member 2	protein-coding
170392	chr3	184815121	184815830	+	0	NA	intron (NR_146115, intron 2 of 2)	Tigger3b|DNA|TcMar-Tigger	2968	NR_146115	23355		NM_015303	ENSG00000156931	VPS8	KIAA0804	VPS8 subunit of CORVET complex	protein-coding
47208	chr12	844951	845130	+	0	NA	intron (NM_018979, intron 4 of 27)	AluYa5|SINE|Alu	88036	NM_001297420	5893		NM_134422	ENSG00000002016	RAD52	-	RAD52 homolog, DNA repair protein	protein-coding
115130	chr19	14374721	14376100	+	0	NA	Intergenic	Intergenic	-5734	NM_001784	976		NM_001784	ENSG00000123146	ADGRE5	CD97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
188731	chr5	157464271	157464850	+	0	NA	intron (NM_001172292, intron 2 of 4)	L2c|LINE|L2	4347	NM_001099287	348938		NM_001099287	ENSG00000172548	NIPAL4	ARCI6|ICHTHYIN|ICHYN|NIPA4|SLC57A6	NIPA like domain containing 4	protein-coding
98056	chr17	45450271	45450630	+	0	NA	intron (NM_014798, intron 8 of 11).3	intron (NM_014798, intron 8 of 11).3	-17580	NR_169600	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
79742	chr16	1339101	1339400	+	0	NA	intron (NM_001199099, intron 4 of 33)	intron (NM_001199099, intron 4 of 33)	3053	NM_001199096	8938		NM_003933	ENSG00000007516	BAIAP3	BAP3	BAI1 associated protein 3	protein-coding
10330	chr1	64903221	64903480	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	63199	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
20567	chr1	198723771	198724330	+	0	NA	intron (NM_002838, intron 15 of 32)	LTR87|LTR|ERVL?	85010	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
17036	chr1	156074851	156075150	+	0	NA	3' UTR (NM_001093725, exon 2 of 2)	3' UTR (NM_001093725, exon 2 of 2)	7465	NM_001093725	92312		NM_001093725	ENSG00000254726	MEX3A	MEX-3A|RKHD4|RNF162	mex-3 RNA binding family member A	protein-coding
151982	chr22	19153101	19153300	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-2908	NM_005315	2928		NM_005315	ENSG00000063515	GSC2	GSCL	goosecoid homeobox 2	protein-coding
47161	chr12	772071	772600	+	0	NA	intron (NM_018979, intron 1 of 27)	intron (NM_018979, intron 1 of 27)	19412	NM_001184985	65125		NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding
102694	chr17	76136551	76136850	+	0	NA	3' UTR (NM_001454, exon 3 of 3)	3' UTR (NM_001454, exon 3 of 3)	-3856	NR_040017	100507218		NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA
111293	chr19	3576121	3576630	+	0	NA	intron (NM_006339, intron 6 of 9)	intron (NM_006339, intron 6 of 9)	3431	NM_006339	10362		NM_006339	ENSG00000064961	HMG20B	BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857	high mobility group 20B	protein-coding
61402	chr13	51643371	51644250	+	0	NA	intron (NM_052950, intron 1 of 11)	intron (NM_052950, intron 1 of 11)	59348	NM_052950	115825		NM_052950	ENSG00000139668	WDFY2	PROF|WDF2|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
7458	chr1	33083771	33084700	+	0	NA	intron (NM_001376724, intron 3 of 9)	intron (NM_001376724, intron 3 of 9)	2057	NR_126031	113451		NM_052998	ENSG00000142920	AZIN2	ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp	antizyme inhibitor 2	protein-coding
151213	chr21	45208571	45209200	+	0	NA	intron (NR_073200, intron 10 of 12)	intron (NR_073200, intron 10 of 12)	-25455	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
146416	chr20	49519801	49520000	+	0	NA	intron (NM_000961, intron 6 of 9)	L2a|LINE|L2	-37232	NM_004975	3745		NM_004975	ENSG00000158445	KCNB1	DEE26|DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
16543	chr1	154957421	154957930	+	0	NA	3' UTR (NM_138300, exon 3 of 3)	3' UTR (NM_138300, exon 3 of 3)	-1576	NM_001317735	57326		NM_020524	ENSG00000163346	PBXIP1	HPIP	PBX homeobox interacting protein 1	protein-coding
116766	chr19	18495781	18497880	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	25240	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
238410	chrX	150573171	150573330	+	0	NA	intron (NM_001376908, intron 1 of 14)	intron (NM_001376908, intron 1 of 14)	4629	NM_000252	4534		NM_000252	ENSG00000171100	MTM1	CNM|CNMX|MTMX|XLMTM	myotubularin 1	protein-coding
171021	chr3	195087351	195088240	+	0	NA	intron (NM_001308069, intron 3 of 3)	L1PA2|LINE|L1	-6793	NR_104188	100874528		NR_104188	ENSG00000233303	XXYLT1-AS1	-	XXYLT1 antisense RNA 1	ncRNA
160451	chr3	29686901	29687230	+	0	NA	intron (NM_001003793, intron 4 of 14)	intron (NM_001003793, intron 4 of 14)	247091	NR_046556	100873977		NR_046556	ENSG00000235593	RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA
144714	chr20	36541101	36541850	+	0	NA	promoter-TSS (NM_006097)	promoter-TSS (NM_006097)	-44	NM_006097	10398		NM_006097	ENSG00000101335	MYL9	LC20|MLC-2C|MLC2|MMIHS4|MRLC1|MYRL2	myosin light chain 9	protein-coding
2273	chr1	8931121	8931380	+	0	NA	Intergenic	AluSz|SINE|Alu	-14618	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
210372	chr7	99600301	99600900	+	0	NA	intron (NM_001195541, intron 2 of 5)	THE1B|LTR|ERVL-MaLR	2333	NM_001195541	100289187		NM_001195541	ENSG00000244219	TMEM225B	GS1-259H13.2	transmembrane protein 225B	protein-coding
47868	chr12	6660901	6661800	+	0	NA	intron (NM_016162, intron 1 of 7)	AluSx3|SINE|Alu	1769	NM_001127583	51147		NM_016162	ENSG00000111653	ING4	my036|p29ING4	inhibitor of growth family member 4	protein-coding
114464	chr19	12728701	12729350	+	0	NA	Intergenic	Intergenic	-5093	NM_001382241	30000		NM_013433	ENSG00000105576	TNPO2	IDDHISD|IPO3|KPNB2B|TRN2	transportin 2	protein-coding
59798	chr13	30368471	30369030	+	0	NA	intron (NR_024464, intron 2 of 4)	intron (NR_024464, intron 2 of 4)	5164	NR_024464	100188949		NR_024464	ENSG00000238121	LINC00426	-	long intergenic non-protein coding RNA 426	ncRNA
154052	chr22	30596471	30596630	+	0	NA	intron (NM_001282327, intron 2 of 16)	LTR57-int|LTR|ERVL	-4640	NM_014303	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
118992	chr19	38884971	38885330	+	0	NA	intron (NR_034146, intron 6 of 13)	AluJo|SINE|Alu	-6875	NM_001195833	126432		NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding
158912	chr3	9986321	9987650	+	0	NA	promoter-TSS (NR_103821)	promoter-TSS (NR_103821)	92	NR_103821	442075		NM_001013730		EMC3-AS1	-	EMC3 antisense RNA 1	ncRNA
53478	chr12	66145271	66145430	+	0	NA	intron (NM_001282606, intron 6 of 7)	intron (NM_001282606, intron 6 of 7)	14599	NR_125724	103625681		NR_125724	ENSG00000239335	LLPH-DT	LLPH-AS1	LLPH divergent transcript	ncRNA
186518	chr5	138352331	138353730	+	0	NA	intron (NM_016604, intron 1 of 23)	CpG	345	NM_016604	51780		NM_016604	ENSG00000120733	KDM3B	5qNCA|C5orf7|DIJOS|JMJD1B|NET22	lysine demethylase 3B	protein-coding
231480	chr9	131360701	131361580	+	0	NA	Intergenic	AluSq2|SINE|Alu	-12511	NM_001384822	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
133843	chr2	128216151	128216450	+	0	NA	Intergenic	LTR12F|LTR|ERV1	102568	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
155208	chr22	37846151	37846850	+	0	NA	intron (NM_001349853, intron 1 of 7)	AluJr|SINE|Alu	1274	NR_030396	724029		NR_030396	ENSG00000207696	MIR659	MIRN659|hsa-mir-659|mir-659	microRNA 659	ncRNA
7289	chr1	32391371	32391730	+	0	NA	intron (NM_018045, intron 2 of 10)	intron (NM_018045, intron 2 of 10)	2891	NM_018045	55108		NM_018045	ENSG00000160058	BSDC1	-	BSD domain containing 1	protein-coding
158283	chr22	50349721	50350080	+	0	NA	intron (NM_001351641, intron 1 of 23)	AluSx|SINE|Alu	6573	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
183762	chr5	81724521	81724980	+	0	NA	intron (NM_001256733, intron 1 of 15)	L1M2|LINE|L1	26503	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
73315	chr15	41897251	41897350	+	0	NA	non-coding (NR_135681, exon 3 of 4)	non-coding (NR_135681, exon 3 of 4)	-3247	NM_016642	51332		NM_016642	ENSG00000137877	SPTBN5	BSPECV|HUBSPECV|HUSPECV	spectrin beta, non-erythrocytic 5	protein-coding
124746	chr2	6909321	6910280	+	0	NA	Intergenic	Intergenic	-7612	NM_001349181	9781		NM_014746	ENSG00000151692	RNF144A	RNF144|UBCE7IP4|UIP4|hUIP4	ring finger protein 144A	protein-coding
46831	chr11	131633651	131633750	+	0	NA	intron (NM_001352005, intron 1 of 8)	(TCTC)n|Simple_repeat|Simple_repeat	29856	NR_126159	101929637		NM_207432		NTM-AS1	C11orf39	NTM antisense RNA 1	ncRNA
33273	chr10	114523901	114524330	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	2798	NM_001322898	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
167402	chr3	128992601	128992980	+	0	NA	promoter-TSS (NM_001348523)	promoter-TSS (NM_001348523)	-893	NM_001348523	57501		NM_020741	ENSG00000114656	CFAP92	FAP92|KIAA1257	cilia and flagella associated protein 92 (putative)	protein-coding
67241	chr14	68969851	68970750	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	9002	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
221345	chr8	123167201	123167400	+	0	NA	Intergenic	Intergenic	-11747	NM_207006	84985		NM_032899	ENSG00000147689	FAM83A	BJ-TSA-9	family with sequence similarity 83 member A	protein-coding
102793	chr17	76382621	76383900	+	0	NA	promoter-TSS (NM_001355139)	promoter-TSS (NM_001355139)	56	NM_001355139	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
145088	chr20	38678401	38678850	+	0	NA	Intergenic	Intergenic	-45861	NM_080552	140679		NM_080552	ENSG00000101438	SLC32A1	DEE114|GEFSP12|VGAT|VIAAT|VIAAT GEFSP12	solute carrier family 32 member 1	protein-coding
35680	chr11	1882101	1882900	+	0	NA	intron (NM_001289005, intron 3 of 10)	intron (NM_001289005, intron 3 of 10)	2455	NR_107001	102465993		NR_107001	ENSG00000284594	MIR7847	hsa-mir-7847	microRNA 7847	ncRNA
12101	chr1	100028301	100029530	+	0	NA	3' UTR (NM_012243, exon 8 of 8)	3' UTR (NM_012243, exon 8 of 8)	-9180	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
136235	chr2	174601271	174601850	+	0	NA	intron (NM_001077269, intron 1 of 7)	intron (NM_001077269, intron 1 of 7)	-3329	NM_001375838	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
218142	chr8	41767171	41767330	+	0	NA	intron (NM_001142446, intron 1 of 42)	CpG	30372	NM_000037	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
221870	chr8	128388321	128388580	+	0	NA	Intergenic	Intergenic	176229	NR_121672	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
93903	chr17	21250871	21251550	+	0	NA	intron (NM_152914, intron 1 of 2)	intron (NM_152914, intron 1 of 2)	2200	NM_152914	256302		NM_152914	ENSG00000274180	NATD1	C17orf103|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
190525	chr5	180618771	180619450	+	0	NA	intron (NM_001354989, intron 19 of 29)	CpG-22961	-27611	NM_052863	92304		NM_052863	ENSG00000161055	SCGB3A1	HIN-1|HIN1|LU105|PnSP-2|UGRP2	secretoglobin family 3A member 1	protein-coding
148003	chr20	63033101	63033780	+	0	NA	TTS (NR_028295)	TTS (NR_028295)	3588	NR_028295	100144596		NM_022099		LINC00029	C20orf51|NCRNA00029	long intergenic non-protein coding RNA 29	ncRNA
169254	chr3	157159001	157159700	+	0	NA	intron (NM_001308185, intron 2 of 10)	intron (NM_001308185, intron 2 of 10)	797	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
180005	chr5	982751	983050	+	0	NA	Intergenic	Intergenic	14440	NR_104614	100506688		NM_001242737	ENSG00000215246	LINC02982	-	long intergenic non-protein coding RNA 2982	ncRNA
33086	chr10	110903201	110904000	+	0	NA	intron (NM_001243783, intron 1 of 2)	intron (NM_001243783, intron 1 of 2)	5510	NR_039828	100616113		NR_039828	ENSG00000284482	MIR4680	-	microRNA 4680	ncRNA
46138	chr11	123043671	123044280	+	0	NA	Intergenic	AluJo|SINE|Alu	14181	NR_003125	85391		NR_003125	ENSG00000200879	SNORD14E	-	small nucleolar RNA, C/D box 14E	snoRNA
194043	chr6	31845451	31845700	+	0	NA	Intergenic	L2|LINE|L2	8499	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
227374	chr9	89495101	89495550	+	0	NA	intron (NM_001371194, intron 1 of 15)	intron (NM_001371194, intron 1 of 15)	331	NM_001371198	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
126444	chr2	28082151	28082400	+	0	NA	intron (NM_199193, intron 7 of 13)	intron (NM_199193, intron 7 of 13)	85908	NR_036230	100422965		NR_036230	ENSG00000265321	MIR4263	-	microRNA 4263	ncRNA
195445	chr6	36971451	36972430	+	0	NA	intron (NM_014341, intron 8 of 11)	intron (NM_014341, intron 8 of 11)	14256	NM_001271641	23787		NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
12808	chr1	109895671	109896130	+	0	NA	Intergenic	Intergenic	-14949	NM_172212	1435		NM_000757	ENSG00000184371	CSF1	CSF-1|MCSF|PG-M-CSF	colony stimulating factor 1	protein-coding
9586	chr1	52034851	52035530	+	0	NA	intron (NR_046405, intron 2 of 2)	intron (NR_046405, intron 2 of 2)	-1380	NM_138417	112970		NM_138417	ENSG00000198841	KTI12	SBBI81|TOT4	KTI12 chromatin associated homolog	protein-coding
218099	chr8	38975401	38975900	+	0	NA	intron (NM_153692, intron 2 of 8)	AluJo|SINE|Alu	1422	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
182303	chr5	58457371	58457730	+	0	NA	exon (NM_006622, exon 6 of 14)	exon (NM_006622, exon 6 of 14)	2536	NM_006622	10769		NM_006622	ENSG00000145632	PLK2	SNK|hPlk2|hSNK	polo like kinase 2	protein-coding
144613	chr20	35835001	35835400	+	0	NA	intron (NM_016436, intron 2 of 17)	AluSc|SINE|Alu	63185	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
172679	chr4	2741801	2742230	+	0	NA	3' UTR (NM_024309, exon 6 of 6)	3' UTR (NM_024309, exon 6 of 6)	14321	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
148309	chr20	63734871	63735030	+	0	NA	promoter-TSS (NM_001305654)	promoter-TSS (NM_001305654)	-751	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
153475	chr22	25462451	25462950	+	0	NA	Intergenic	Intergenic	7054	NR_106875	102466198		NR_106875	ENSG00000277872	MIR6817	hsa-mir-6817	microRNA 6817	ncRNA
235117	chrX	40722871	40723280	+	0	NA	intron (NM_004229, intron 3 of 30)	L1M1|LINE|L1	12467	NM_004229	9282		NM_004229	ENSG00000180182	MED14	CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170	mediator complex subunit 14	protein-coding
161145	chr3	38961001	38961230	+	0	NA	intron (NM_001349253, intron 2 of 29)	intron (NM_001349253, intron 2 of 29)	-10554	NM_014139	11280		NM_014139	ENSG00000168356	SCN11A	FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2	sodium voltage-gated channel alpha subunit 11	protein-coding
105119	chr17	82216201	82217130	+	0	NA	Intergenic	Intergenic	-3823	NM_001367828	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
84938	chr16	31330901	31331880	+	0	NA	intron (NM_000632, intron 29 of 29)	CpG-9573	-23786	NM_001286375	3687		NM_000887	ENSG00000140678	ITGAX	CD11C|SLEB6	integrin subunit alpha X	protein-coding
85043	chr16	31872801	31875300	+	0	NA	intron (NM_003414, intron 1 of 3)	CpG	243	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
190847	chr6	1614771	1615530	+	0	NA	Intergenic	CpG-23105	5235	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
56485	chr12	116217451	116217750	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	60093	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
74503	chr15	60326871	60327230	+	0	NA	Intergenic	Intergenic	70936	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
55510	chr12	105045851	105045950	+	0	NA	intron (NR_027752, intron 15 of 22)	intron (NR_027752, intron 15 of 22)	38558	NM_001034173	160428		NM_001034173	ENSG00000136010	ALDH1L2	mtFDH	aldehyde dehydrogenase 1 family member L2	protein-coding
217608	chr8	29773671	29774250	+	0	NA	intron (NR_125815, intron 1 of 3)	intron (NR_125815, intron 1 of 3)	25651	NR_125815	101929450		NR_125814	ENSG00000253490	LINC02099	-	long intergenic non-protein coding RNA 2099	ncRNA
192529	chr6	25052301	25052700	+	0	NA	Intergenic	MER4B|LTR|ERV1	-10212	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
218393	chr8	46956671	46957350	+	0	NA	Intergenic	Intergenic	116124	NR_027012	497634		NR_027012	ENSG00000253314	LINC00293	BEYLA|NCRNA00293	long intergenic non-protein coding RNA 293	ncRNA
182009	chr5	55324551	55325600	+	0	NA	intron (NM_015360, intron 3 of 26)	intron (NM_015360, intron 3 of 26)	17086	NM_015360	23517		NM_015360	ENSG00000039123	MTREX	Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118	Mtr4 exosome RNA helicase	protein-coding
110973	chr19	2959201	2960250	+	0	NA	Intergenic	AluSx1|SINE|Alu	-14754	NM_021217	58492		NM_021217	ENSG00000175691	ZNF77	pT1	zinc finger protein 77	protein-coding
167174	chr3	128079571	128079730	+	0	NA	TTS (NR_046645)	TTS (NR_046645)	3840	NR_046645	100874089		NR_046645	ENSG00000239608	RUVBL1-AS1	-	RUVBL1 antisense RNA 1	ncRNA
87363	chr16	70403851	70405030	+	0	NA	intron (NM_006927, intron 1 of 6)	L1MB7|LINE|L1	34660	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
194349	chr6	32896521	32896980	+	0	NA	intron (NR_037177, intron 1 of 1)	intron (NR_037177, intron 1 of 1)	2574	NR_037178	100294145		NR_037177	ENSG00000289047	LOC100294145	-	uncharacterized LOC100294145	ncRNA
165967	chr3	107975651	107976230	+	0	NA	Intergenic	Arthur1C|DNA|hAT-Tip100	92735	NR_015394	285205		NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA
130921	chr2	87479951	87480250	+	0	NA	intron (NR_024204, intron 2 of 3)	MIRb|SINE|MIR	10150	NR_146460	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
57075	chr12	121020551	121020650	+	0	NA	exon (NM_003733, exon 6 of 6)	exon (NM_003733, exon 6 of 6)	-4113	NM_001286197	64897		NM_022895	ENSG00000157895	C12orf43	Custos	chromosome 12 open reading frame 43	protein-coding
30010	chr10	73771611	73773780	+	0	NA	TTS (NM_004922)	TTS (NM_004922)	404	NM_001284194	170384		NM_173540	ENSG00000196968	FUT11	FUCTXI	fucosyltransferase 11	protein-coding
170675	chr3	187738401	187739400	+	0	NA	intron (NM_001706, intron 1 of 9)	intron (NM_001706, intron 1 of 9)	-2399	NM_001130845	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
217958	chr8	38266351	38266850	+	0	NA	TTS (NM_001354457)	TTS (NM_001354457)	2620	NM_032483	84513		NM_032483	ENSG00000147535	PLPP5	DPPL1|HTPAP|PPAPDC1B	phospholipid phosphatase 5	protein-coding
84289	chr16	30080201	30080400	+	0	NA	intron (NM_001303507, intron 2 of 7)	AluSz|SINE|Alu	4306	NM_001303507	5531		NM_002720	ENSG00000149923	PPP4C	PP-X|PP4|PP4C|PPH3|PPP4|PPX	protein phosphatase 4 catalytic subunit	protein-coding
21785	chr1	206935451	206935780	+	0	NA	exon (NM_002644, exon 5 of 11)	exon (NM_002644, exon 5 of 11)	10851	NM_002644	5284		NM_002644	ENSG00000162896	PIGR	-	polymeric immunoglobulin receptor	protein-coding
15217	chr1	149440951	149441050	+	0	NA	intron (NM_001364012, intron 2 of 4)	intron (NM_001364012, intron 2 of 4)	-34898	NM_001351365	101060226		NM_001351365	ENSG00000271383	NBPF19	-	NBPF member 19	protein-coding
138434	chr2	205984451	205984550	+	0	NA	Intergenic	MIR3|SINE|MIR	101674	NM_017759	54891		NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding
137622	chr2	197322871	197323900	+	0	NA	Intergenic	L2c|LINE|L2	-12605	NM_001367497	91526		NM_153697	ENSG00000065413	ANKRD44	PP6-ARS-B	ankyrin repeat domain 44	protein-coding
119137	chr19	39374221	39374680	+	0	NA	intron (NM_001384588, intron 5 of 13)	intron (NM_001384588, intron 5 of 13)	16656	NM_001256826	54623		NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding
201433	chr6	147207701	147207900	+	0	NA	intron (NM_139244, intron 2 of 25)	intron (NM_139244, intron 2 of 25)	-3186	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
68514	chr14	88562751	88563950	+	0	NA	promoter-TSS (NM_001326316)	promoter-TSS (NM_001326316)	3	NM_207661	79882		NM_024824	ENSG00000100722	ZC3H14	MRT56|MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
153562	chr22	26647501	26648280	+	0	NA	Intergenic	Intergenic	-9592	NR_033321	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
39055	chr11	47920321	47921000	+	0	NA	Intergenic	Intergenic	-59899	NM_002843	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
81736	chr16	11345021	11346580	+	0	NA	promoter-TSS (NR_135174)	promoter-TSS (NR_135174)	341	NM_152308	116028		NM_152308	ENSG00000175643	RMI2	BLAP18|C16orf75	RecQ mediated genome instability 2	protein-coding
80038	chr16	1954651	1955150	+	0	NA	promoter-TSS (NM_005061)	promoter-TSS (NM_005061)	-211	NM_005061	6123		NM_005061	ENSG00000140986	RPL3L	CMD2D	ribosomal protein L3 like	protein-coding
120771	chr19	45432521	45433080	+	0	NA	intron (NM_001369412, intron 1 of 9)	AluSp|SINE|Alu	-3854	NR_106736	102464836		NR_106736	ENSG00000275726	MIR6088	hsa-mir-6088	microRNA 6088	ncRNA
226429	chr9	70664871	70665430	+	0	NA	intron (NM_206947, intron 10 of 24)	intron (NM_206947, intron 10 of 24)	144934	NR_029621	406987		NR_029621	ENSG00000207935	MIR204	MIRN204|RDICC|miRNA204|mir-204	microRNA 204	ncRNA
116798	chr19	18526701	18526900	+	0	NA	Intergenic	Intergenic	-4730	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
9398	chr1	47440371	47441200	+	0	NA	TTS (NM_004474)	TTS (NM_004474)	2741	NM_004474	2306		NM_004474	ENSG00000186564	FOXD2	FKHL17|FREAC-9|FREAC9	forkhead box D2	protein-coding
156718	chr22	41785051	41785830	+	0	NA	intron (NM_152513, intron 26 of 30)	AluY|SINE|Alu	-15239	NM_001382346	79879		NM_024821	ENSG00000100147	CCDC134	OI22	coiled-coil domain containing 134	protein-coding
76572	chr15	75298871	75299980	+	0	NA	Intergenic	Intergenic	16584	NM_001145224	653643		NM_001145224	ENSG00000140478	GOLGA6D	-	golgin A6 family member D	protein-coding
27410	chr10	31362151	31362450	+	0	NA	3' UTR (NM_001368169, exon 2 of 2)	3' UTR (NM_001368169, exon 2 of 2)	37455	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
128245	chr2	54553971	54554700	+	0	NA	intron (NM_003128, intron 2 of 35)	MIRc|SINE|MIR	-4059	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
90819	chr17	2270801	2271000	+	0	NA	intron (NM_017575, intron 8 of 18)	intron (NM_017575, intron 8 of 18)	-4715	NM_001256827	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
60698	chr13	43894471	43894630	+	0	NA	TTS (NM_001350645)	TTS (NM_001350645)	14646	NM_001350647	144811		NM_153218	ENSG00000179630	LACC1	C13orf31|FAMIN|JUVAR	laccase domain containing 1	protein-coding
187107	chr5	140377171	140377330	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	17056	NM_001258426	83697		NM_031467	ENSG00000113073	SLC4A9	AE4	solute carrier family 4 member 9	protein-coding
19113	chr1	171497671	171498430	+	0	NA	intron (NM_015172, intron 1 of 33)	AluJo|SINE|Alu	12520	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
219705	chr8	80919671	80920000	+	0	NA	Intergenic	Intergenic	-45054	NM_001033723	619279		NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
34910	chr11	400621	400880	+	0	NA	intron (NM_007183, intron 8 of 12)	CpG-3735	6541	NM_007183	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
54143	chr12	76549221	76549600	+	0	NA	intron (NM_001319652, intron 1 of 25)	HAL1ME|LINE|L1	10361	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
209422	chr7	76356071	76356230	+	0	NA	intron (NM_012479, intron 1 of 1)	intron (NM_012479, intron 1 of 1)	2841	NM_012479	7532		NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|DEE56|EIEE56|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding
1671	chr1	3910771	3911350	+	0	NA	intron (NR_024455, intron 2 of 3)	intron (NR_024455, intron 2 of 3)	10656	NR_024455	100133612		NR_024455	ENSG00000236423	LINC01134	TLNC1	long intergenic non-protein coding RNA 1134	ncRNA
27151	chr10	28335001	28335980	+	0	NA	Intergenic	Intergenic	-32426	NR_134517	143098		NM_173496	ENSG00000150054	MPP7	-	MAGUK p55 scaffold protein 7	protein-coding
172646	chr4	2571951	2572050	+	0	NA	intron (NM_001366318, intron 1 of 20)	AluSx3|SINE|Alu	35353	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
83697	chr16	28465401	28465830	+	0	NA	Intergenic	Intergenic	26459	NM_001286109	1201		NM_000086	ENSG00000188603	CLN3	BTN1|BTS|JNCL	CLN3 lysosomal/endosomal transmembrane protein, battenin	protein-coding
234022	chrX	3712321	3712690	+	0	NA	intron (NM_005044, intron 1 of 8)	CpG	1144	NM_005044	5613		NM_005044	ENSG00000183943	PRKX	PKX1	protein kinase cAMP-dependent X-linked catalytic subunit	protein-coding
178824	chr4	153542721	153542980	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	76490	NM_001131007	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
40932	chr11	65266251	65266550	+	0	NA	intron (NM_002689, intron 1 of 17)	L2a|LINE|L2	4438	NM_002689	23649		NM_002689	ENSG00000014138	POLA2	-	DNA polymerase alpha 2, accessory subunit	protein-coding
139866	chr2	230615001	230615200	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	85429	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
30641	chr10	80457821	80458350	+	0	NA	intron (NM_001128309, intron 1 of 5)	intron (NM_001128309, intron 1 of 5)	-1200	NM_001351269	81619		NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14|tspan-14	tetraspanin 14	protein-coding
206165	chr7	28035121	28035380	+	0	NA	intron (NM_175061, intron 1 of 4)	AluSx1|SINE|Alu	-145207	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
165355	chr3	89099001	89099250	+	0	NA	Intergenic	Intergenic	-8496	NM_182644	2042		NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding
27858	chr10	40817051	40817150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1550945	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
113540	chr19	10171251	10171350	+	0	NA	intron (NM_001318730, intron 8 of 39)	intron (NM_001318730, intron 8 of 39)	23653	NM_001318731	1786		NM_001379	ENSG00000130816	DNMT1	ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI	DNA methyltransferase 1	protein-coding
124779	chr2	7429301	7429500	+	0	NA	intron (NR_038432, intron 3 of 5)	LTR50|LTR|ERVL	8139	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
63037	chr13	112966271	112966700	+	0	NA	TTS (NR_034002)	TTS (NR_034002)	2153	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
203041	chr6	164927571	164927750	+	0	NA	Intergenic	Intergenic	-105597	NR_131926	105378111		NR_131926		MEAT6	-	melanoma-associated transcript 6	ncRNA
18925	chr1	168444921	168445550	+	0	NA	Intergenic	AluSc|SINE|Alu	-22579	NR_037851	100505918		NR_037851		LOC100505918	-	uncharacterized LOC100505918	ncRNA
198171	chr6	95584371	95584530	+	0	NA	intron (NM_024641, intron 1 of 4)	MER11A|LTR|ERVK	6915	NM_024641	79694		NM_024641	ENSG00000172469	MANEA	ENDO|hEndo	mannosidase endo-alpha	protein-coding
73233	chr15	41664601	41664880	+	0	NA	intron (NM_001164273, intron 1 of 23)	intron (NM_001164273, intron 1 of 23)	4328	NM_001080541	23269		NM_001080541	ENSG00000174197	MGA	MAD5|MXD5	MAX dimerization protein MGA	protein-coding
197729	chr6	87139301	87139950	+	0	NA	Intergenic	Intergenic	-15940	NM_015021	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
190341	chr5	179657371	179658680	+	0	NA	promoter-TSS (NR_134259)	promoter-TSS (NR_134259)	-81	NR_134259	105377763		NR_134259		LOC105377763	-	uncharacterized LOC105377763	ncRNA
215561	chr7	158810471	158810880	+	0	NA	intron (NM_020728, intron 1 of 21)	AluJb|SINE|Alu	18834	NM_001367773	57488		NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding
64664	chr14	31568051	31568350	+	0	NA	intron (NM_025152, intron 3 of 10)	intron (NM_025152, intron 3 of 10)	6796	NR_120408	80224		NM_025152	ENSG00000151413	NUBPL	C14orf127|IND1|MC1DN21|huInd1	NUBP iron-sulfur cluster assembly factor, mitochondrial	protein-coding
63814	chr14	21444371	21444730	+	0	NA	intron (NM_001170629, intron 1 of 37)	intron (NM_001170629, intron 1 of 37)	-7275	NM_020920	57680		NM_020920	ENSG00000100888	CHD8	AUTS18|HELSNF1|IDDAM	chromodomain helicase DNA binding protein 8	protein-coding
105060	chr17	82082171	82083480	+	0	NA	intron (NM_004104, intron 33 of 42)	intron (NM_004104, intron 33 of 42)	7315	NR_132755	106633803		NR_132755		SNORD134	ZL12	small nucleolar RNA, C/D box 134	snoRNA
5082	chr1	24695421	24696400	+	0	NA	Intergenic	Intergenic	-49537	NM_013943	25932		NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding
157303	chr22	44479671	44480100	+	0	NA	Intergenic	Intergenic	18348	NM_032287	84247		NM_032287	ENSG00000188636	RTL6	LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2	retrotransposon Gag like 6	protein-coding
69601	chr14	97412871	97413230	+	0	NA	Intergenic	Intergenic	-45766	NR_110165	101929241		NR_110165	ENSG00000246084	LINC02325	-	long intergenic non-protein coding RNA 2325	ncRNA
115252	chr19	14531071	14531600	+	0	NA	intron (NM_138501, intron 1 of 12)	AluSq2|SINE|Alu	1741	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
185434	chr5	131170551	131171750	+	0	NA	intron (NM_001293735, intron 1 of 3)	intron (NM_001293735, intron 1 of 3)	206	NM_001293735	90624		NM_181705	ENSG00000186687	LYRM7	C5orf31|MC3DN8|MZM1L	LYR motif containing 7	protein-coding
221521	chr8	124649881	124650690	+	0	NA	intron (NM_001363300, intron 3 of 12)	AluSg|SINE|Alu	78188	NM_001363297	9788		NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS I-BAR domain containing 1	protein-coding
216314	chr8	12715151	12716300	+	0	NA	Intergenic	SATR1|Satellite|Satellite	-3402	NR_049875	100847066		NR_049875	ENSG00000266318	MIR5692A1	-	microRNA 5692a-1	ncRNA
114008	chr19	10867271	10867430	+	0	NA	intron (NM_001136482, intron 6 of 6)	AluSp|SINE|Alu	-4203	NM_199141	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
134929	chr2	151379121	151379400	+	0	NA	non-coding (NR_110248, exon 1 of 3)	non-coding (NR_110248, exon 1 of 3)	111	NR_110248	101929319		NR_110248		LOC101929319	-	uncharacterized LOC101929319	ncRNA
44032	chr11	95096071	95096480	+	0	NA	intron (NM_015036, intron 1 of 1)	intron (NM_015036, intron 1 of 1)	6429	NM_015036	23052		NM_015036	ENSG00000149218	ENDOD1	-	endonuclease domain containing 1	protein-coding
118485	chr19	35911651	35911950	+	0	NA	Intergenic	AluSz|SINE|Alu	-3505	NM_003332	7305		NM_003332	ENSG00000011600	TYROBP	DAP12|KARAP|PLOSL|PLOSL1	transmembrane immune signaling adaptor TYROBP	protein-coding
111688	chr19	4271671	4272100	+	0	NA	Intergenic	AluSz|SINE|Alu	-7184	NM_001372011	56961		NM_020209	ENSG00000105251	SHD	-	Src homology 2 domain containing transforming protein D	protein-coding
204927	chr7	6221221	6222100	+	0	NA	intron (NM_004227, intron 1 of 12)	L1MC4a|LINE|L1	-49523	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
232218	chr9	134369571	134369730	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	-9645	NM_001291920	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
143447	chr20	30349071	30349250	+	0	NA	Intergenic	Intergenic	-28004	NR_003579	284802		NM_207350		FRG1BP	C20orf80|FRG1B|bA348I14.2	FSHD region gene 1 family member B, pseudogene	pseudo
175458	chr4	71713601	71713880	+	0	NA	Intergenic	Intergenic	70339	NM_000583	2638		NM_000583	ENSG00000145321	GC	DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP	GC vitamin D binding protein	protein-coding
82672	chr16	19696021	19696930	+	0	NA	intron (NR_158160, intron 27 of 28)	intron (NR_158160, intron 27 of 28)	-19981	NR_130967	124152		NM_153208	ENSG00000174628	IQCK	-	IQ motif containing K	protein-coding
68135	chr14	75530001	75530700	+	0	NA	intron (NM_006399, intron 2 of 2)	L1ME4b|LINE|L1	7881	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
111415	chr19	3777051	3777500	+	0	NA	TTS (NM_002378)	TTS (NM_002378)	-5047	NM_032753	84839		NM_032753	ENSG00000173976	RAX2	ARMD6|CORD11|QRX|RAXL1|RP95	retina and anterior neural fold homeobox 2	protein-coding
151495	chr21	46326651	46327300	+	0	NA	intron (NM_006031, intron 2 of 46)	AluSx|SINE|Alu	2308	NM_001315529	5116		NM_006031	ENSG00000160299	PCNT	KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4	pericentrin	protein-coding
158698	chr3	5428951	5429130	+	0	NA	Intergenic	Intergenic	-178785	NR_039953	100616334		NR_039953	ENSG00000265180	MIR4790	-	microRNA 4790	ncRNA
118618	chr19	36852521	36852850	+	0	NA	intron (NR_038362, intron 2 of 2)	L1M5|LINE|L1	1034	NM_001242475	25850		NM_003419	ENSG00000251247	ZNF345	HZF10	zinc finger protein 345	protein-coding
65522	chr14	51909521	51909780	+	0	NA	intron (NM_053064, intron 2 of 3)	intron (NM_053064, intron 2 of 3)	8921	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
141765	chr2	242008921	242009350	+	0	NA	intron (NR_110220, intron 3 of 3)	CpG	7926	NR_149023	285097		NM_178530	ENSG00000280119	LOC285097	-	uncharacterized FLJ38379	ncRNA
42710	chr11	72674971	72675780	+	0	NA	promoter-TSS (NM_002599)	promoter-TSS (NM_002599)	-953	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
172990	chr4	4246971	4247130	+	0	NA	intron (NM_001297551, intron 1 of 4)	AluSg4|SINE|Alu	1173	NM_001297551	85013		NM_032927	ENSG00000132406	TMEM128	-	transmembrane protein 128	protein-coding
167620	chr3	129582421	129582680	+	0	NA	intron (NM_015103, intron 8 of 35)	intron (NM_015103, intron 8 of 35)	24126	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
140106	chr2	231470371	231470530	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-5966	NM_005381	4691		NM_005381	ENSG00000115053	NCL	C23|Nsr1	nucleolin	protein-coding
50701	chr12	48922921	48923780	+	0	NA	3' UTR (NM_001143782, exon 6 of 6)	3' UTR (NM_001143782, exon 6 of 6)	1638	NM_001143781	51303		NM_016594	ENSG00000134285	FKBP11	FKBP19	FKBP prolyl isomerase 11	protein-coding
107593	chr18	48871451	48871750	+	0	NA	Intergenic	MIRb|SINE|MIR	71207	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
236661	chrX	76151271	76152200	+	0	NA	Intergenic	Intergenic	-21194	NM_001300888	51260		NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding
134194	chr2	134391551	134391850	+	0	NA	intron (NM_001371457, intron 11 of 16)	MLT1A0|LTR|ERVL-MaLR	137628	NM_002410	4249		NM_002410	ENSG00000152127	MGAT5	GNT-V|GNT-VA|MGAT5A|glcNAc-T V	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein-coding
116330	chr19	17835371	17835530	+	0	NA	intron (NM_000215, intron 14 of 23)	L2c|LINE|L2	12532	NM_000215	3718		NM_000215	ENSG00000105639	JAK3	JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK	Janus kinase 3	protein-coding
126050	chr2	25521901	25522730	+	0	NA	intron (NM_001351381, intron 8 of 18)	intron (NM_001351381, intron 8 of 18)	127907	NM_001256308	1838		NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding
37298	chr11	14735971	14736330	+	0	NA	intron (NM_001363569, intron 1 of 15)	intron (NM_001363569, intron 1 of 15)	92346	NM_000922	5140		NM_000922	ENSG00000152270	PDE3B	HcGIP1|cGIPDE1	phosphodiesterase 3B	protein-coding
206504	chr7	33527201	33527430	+	0	NA	intron (NR_145411, intron 20 of 23)	L1PA2|LINE|L1	-198666	NR_165282	55025		NM_017937	ENSG00000173862	FLJ20712	-	uncharacterized FLJ20712	ncRNA
157009	chr22	42522021	42522480	+	0	NA	Intergenic	Intergenic	-2454	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
141839	chr20	454101	454300	+	0	NA	intron (NR_111901, intron 1 of 9)	AluY|SINE|Alu	8333	NR_111901	128637		NM_144628	ENSG00000125875	TBC1D20	C20orf140|WARBM4	TBC1 domain family member 20	protein-coding
71163	chr14	105031071	105031430	+	0	NA	Intergenic	AluJb|SINE|Alu	-10167	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
25593	chr10	8048051	8049850	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	3541	NR_104329	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
33753	chr10	122461321	122462100	+	0	NA	exon (NM_002775, exon 1 of 9)	exon (NM_002775, exon 1 of 9)	157	NM_002775	5654		NM_002775	ENSG00000166033	HTRA1	ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11	HtrA serine peptidase 1	protein-coding
23914	chr1	235014371	235014530	+	0	NA	Intergenic	L2a|LINE|L2	-50451	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
36532	chr11	6498001	6498200	+	0	NA	5' UTR (NM_173589, exon 2 of 8)	5' UTR (NM_173589, exon 2 of 8)	820	NM_173589	144132		NM_144666	ENSG00000179532	DNHD1	C11orf47|CCDC35|DHCD1|DNHD1L|SPGF65	dynein heavy chain domain 1	protein-coding
199556	chr6	118885001	118885200	+	0	NA	intron (NM_001378357, intron 8 of 13)	AluY|SINE|Alu	-9052	NM_014034	25842		NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding
90443	chr17	1367321	1367630	+	0	NA	intron (NM_006761, intron 1 of 5)	AluJo|SINE|Alu	32747	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
216087	chr8	10965621	10965950	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	69517	NR_030328	693183		NR_030328	ENSG00000207600	MIR598	MIRN598|hsa-mir-598|mir-598	microRNA 598	ncRNA
223890	chr9	280551	280880	+	0	NA	intron (NM_001193536, intron 1 of 46)	MLT2C1|LTR|ERVL	7667	NM_001193536	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
127326	chr2	39064701	39064900	+	0	NA	intron (NM_001382394, intron 2 of 22)	AluSx1|SINE|Alu	56251	NM_001382395	6654		NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4|SOS-1	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding
4743	chr1	23427551	23427850	+	0	NA	TTS (NM_001143778)	TTS (NM_001143778)	-2952	NM_003196	6920		NM_003196	ENSG00000204219	TCEA3	TFIIS|TFIIS.H	transcription elongation factor A3	protein-coding
119269	chr19	39529051	39529530	+	0	NA	Intergenic	AluY|SINE|Alu	3562	NM_152361	126272		NM_152361	ENSG00000176401	EID2B	EID-2B|EID-3	EP300 interacting inhibitor of differentiation 2B	protein-coding
158666	chr3	5124301	5124500	+	0	NA	intron (NM_018184, intron 1 of 6)	AluJo|SINE|Alu	2108	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
41047	chr11	65470251	65470350	+	0	NA	Intergenic	AluJo|SINE|Alu	15014	NR_160547	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
109106	chr18	79987921	79989180	+	0	NA	promoter-TSS (NM_001305557)	promoter-TSS (NM_001305557)	13	NR_131175	10907		NM_006701	ENSG00000141759	TXNL4A	BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD	thioredoxin like 4A	protein-coding
209600	chr7	77560971	77561730	+	0	NA	intron (NM_001131008, intron 1 of 17)	intron (NM_001131008, intron 1 of 17)	23307	NM_001131009	5782		NM_002835	ENSG00000127947	PTPN12	PTP-PEST|PTPG1	protein tyrosine phosphatase non-receptor type 12	protein-coding
104242	chr17	80713171	80713330	+	0	NA	intron (NM_020761, intron 4 of 33)	AluSq2|SINE|Alu	92382	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
67958	chr14	74840471	74840880	+	0	NA	Intergenic	Intergenic	35470	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
116284	chr19	17745121	17745580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2394	NM_001384396	23149		NM_015122	ENSG00000130475	FCHO1	IMD76	FCH and mu domain containing endocytic adaptor 1	protein-coding
13999	chr1	120670551	120670650	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-5164	NR_144517	100996724		NR_144516		PDE4DIPP2	CMYA2|MMGL|Myomegalin|PDE4DIP	PDE4DIP pseudogene 2	pseudo
139898	chr2	230713571	230714530	+	0	NA	5' UTR (NM_001130849, exon 1 of 9)	5' UTR (NM_001130849, exon 1 of 9)	502	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
194376	chr6	32981711	32982500	+	0	NA	TTS (NM_005104).5	TTS (NM_005104).5	9021	NM_001199456	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
9167	chr1	45585701	45587080	+	0	NA	intron (NM_001195193, intron 1 of 12)	AluJb|SINE|Alu	2349	NM_002482	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
152107	chr22	19888751	19889250	+	0	NA	intron (NR_147957, intron 10 of 16)	intron (NR_147957, intron 10 of 16)	-34126	NM_024627	79680		NM_024627	ENSG00000215012	RTL10	BOP|C22orf29	retrotransposon Gag like 10	protein-coding
78019	chr15	89874801	89875380	+	0	NA	intron (NM_001199058, intron 7 of 9)	intron (NM_001199058, intron 7 of 9)	8940	NR_049807	100846993		NR_049807	ENSG00000264796	MIR5009	-	microRNA 5009	ncRNA
57493	chr12	122090801	122091000	+	0	NA	intron (NM_014938, intron 1 of 16)	L1MB7|LINE|L1	12144	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
113273	chr19	8521871	8522030	+	0	NA	intron (NM_012335, intron 27 of 27)	AluJo|SINE|Alu	-7783	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
209950	chr7	92634771	92635430	+	0	NA	intron (NM_001145306, intron 5 of 7)	intron (NM_001145306, intron 5 of 7)	-44710	NR_109929	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
56296	chr12	112401671	112402300	+	0	NA	Intergenic	Intergenic	7300	NM_001320139	6128		NM_000970	ENSG00000089009	RPL6	L6|SHUJUN-2|TAXREB107|TXREB1|eL6	ribosomal protein L6	protein-coding
95438	chr17	36131001	36131200	+	0	NA	Intergenic	AluSz|SINE|Alu	27273	NM_001291468	9560		NM_001001435	ENSG00000276070	CCL4L2	AT744.2|CCL4L|SCYA4L|SCYQ4L2	C-C motif chemokine ligand 4 like 2	protein-coding
137400	chr2	196241301	196241580	+	0	NA	intron (NM_001348768, intron 20 of 28)	intron (NM_001348768, intron 20 of 28)	-18584	NR_110226	101927482		NR_110225	ENSG00000229056	HECW2-AS1	-	HECW2 antisense RNA 1	ncRNA
225155	chr9	33794221	33794830	+	0	NA	intron (NM_001197098, intron 1 of 4)	intron (NM_001197098, intron 1 of 4)	-1036	NM_002771	5646		NM_002771	ENSG00000010438	PRSS3	MTG|PRSS4|T9|TRY3|TRY4	serine protease 3	protein-coding
164459	chr3	59575271	59575650	+	0	NA	Intergenic	Intergenic	83037	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
62613	chr13	100573021	100573580	+	0	NA	intron (NM_001195087, intron 2 of 2)	intron (NM_001195087, intron 2 of 2)	15492	NM_001195087	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
82225	chr16	15027801	15028330	+	0	NA	intron (NM_001324019, intron 14 of 22)	L2b|LINE|L2	-17668	NR_036265	100422922		NR_036265	ENSG00000239118	MIR1972-2	-	microRNA 1972-2	ncRNA
18717	chr1	167454921	167457150	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	62494	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
147289	chr20	57616501	57617250	+	0	NA	intron (NM_030776, intron 1 of 7)	intron (NM_030776, intron 1 of 7)	3551	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
236805	chrX	79158121	79158880	+	0	NA	intron (NM_032553, intron 2 of 2)	AluSc|SINE|Alu	13812	NM_032553	84636		NM_032553	ENSG00000147138	GPR174	FKSG79|GPCR17|LPS3|LYPSR3	G protein-coupled receptor 174	protein-coding
234944	chrX	38802521	38802780	+	0	NA	5' UTR (NM_021242, exon 2 of 3)	5' UTR (NM_021242, exon 2 of 3)	1191	NM_001098790	58526		NM_021242	ENSG00000165175	MID1IP1	G12-like|MIG12|S14R|STRAIT11499|THRSPL	MID1 interacting protein 1	protein-coding
132388	chr2	105779301	105779830	+	0	NA	intron (NM_001004722, intron 1 of 3)	intron (NM_001004722, intron 1 of 3)	34502	NM_001004722	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
133221	chr2	113181521	113182430	+	0	NA	intron (NM_012455, intron 1 of 16)	MLT1M|LTR|ERVL-MaLR	8004	NM_012455	23550		NM_012455	ENSG00000125637	PSD4	EFA6B|TIC	pleckstrin and Sec7 domain containing 4	protein-coding
86380	chr16	66598201	66598700	+	0	NA	Intergenic	L1ME2|LINE|L1	-5546	NM_144601	123920		NM_144601	ENSG00000140931	CMTM3	BNAS2|CKLFSF3	CKLF like MARVEL transmembrane domain containing 3	protein-coding
25469	chr10	6678221	6678650	+	0	NA	Intergenic	Intergenic	43365	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
72763	chr15	39686021	39686300	+	0	NA	intron (NM_001324338, intron 10 of 11)	intron (NM_001324338, intron 10 of 11)	96681	NM_001324338	161835		NM_152597	ENSG00000150667	FSIP1	HSD10	fibrous sheath interacting protein 1	protein-coding
69309	chr14	93160071	93160650	+	0	NA	Intergenic	Intergenic	24537	NM_022151	64112		NM_022151	ENSG00000165943	MOAP1	MAP-1|PNMA4	modulator of apoptosis 1	protein-coding
21461	chr1	205567801	205568130	+	0	NA	intron (NR_152721, intron 1 of 3)	intron (NR_152721, intron 1 of 3)	-1049	NM_181644	148808		NM_181644	ENSG00000174514	MFSD4A	MFSD4|SLC60A1|UNQ3064	major facilitator superfamily domain containing 4A	protein-coding
162406	chr3	48239001	48239400	+	0	NA	Intergenic	AluYb9|SINE|Alu	-1904	NM_016089	51385		NM_016089	ENSG00000164048	ZNF589	SZF1	zinc finger protein 589	protein-coding
213394	chr7	136009501	136009980	+	0	NA	Intergenic	Intergenic	-32381	NM_001128619	767558		NM_001128619		LUZP6	MPD6|MTPNUT	leucine zipper protein 6	unknown
237240	chrX	110000921	110001180	+	0	NA	Intergenic	MER41B|LTR|ERV1	-1585	NM_001353851	84187		NM_017698	ENSG00000157600	TMEM164	bB360B22.3	transmembrane protein 164	protein-coding
88598	chr16	85589921	85590380	+	0	NA	Intergenic	Intergenic	-21259	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
4325	chr1	20486101	20487450	+	0	NA	promoter-TSS (NM_018584)	promoter-TSS (NM_018584)	-565	NM_018584	55450		NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding
204402	chr7	3062821	3063480	+	0	NA	Intergenic	Intergenic	-19283	NM_001324281	84433		NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL	caspase recruitment domain family member 11	protein-coding
108827	chr18	79016501	79016700	+	0	NA	Intergenic	Intergenic	36325	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
56761	chr12	120158121	120158380	+	0	NA	intron (NM_006836, intron 25 of 57)	intron (NM_006836, intron 25 of 57)	-2751	NR_039719	100616179		NR_039719	ENSG00000266704	MIR4498	mir-4498	microRNA 4498	ncRNA
199752	chr6	125807921	125808380	+	0	NA	intron (NR_126386, intron 1 of 2)	L2c|LINE|L2	10708	NR_126386	104355145		NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA
80775	chr16	3186101	3186680	+	0	NA	Intergenic	MIR|SINE|MIR	-1814	NM_001370641	4992		NM_012360	ENSG00000168124	OR1F1	OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023	olfactory receptor family 1 subfamily F member 1	protein-coding
238829	chrX	154440251	154440550	+	0	NA	exon (NM_001493, exon 6 of 11)	exon (NM_001493, exon 6 of 11)	3246	NM_001493	2664		NM_001493	ENSG00000203879	GDI1	1A|GDIL|MRX41|MRX48|OPHN2|RABGD1A|RABGDIA|XAP-4|XLID41	GDP dissociation inhibitor 1	protein-coding
159644	chr3	15315051	15315630	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	17246	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
34412	chr10	132400101	132400530	+	0	NA	intron (NM_138499, intron 1 of 2)	intron (NM_138499, intron 1 of 2)	3115	NM_001098637	170394		NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding
21800	chr1	207070871	207071450	+	0	NA	intron (NM_001018053, intron 12 of 14)	intron (NM_001018053, intron 12 of 14)	-17700	NM_001017365	725		NM_000716	ENSG00000123843	C4BPB	C4BP	complement component 4 binding protein beta	protein-coding
214725	chr7	151023151	151024500	+	0	NA	intron (NR_133652, intron 1 of 16)	intron (NR_133652, intron 1 of 16)	674	NM_001317056	285973		NM_001317056	ENSG00000181652	ATG9B	APG9L2|NOS3AS|SONE	autophagy related 9B	protein-coding
195835	chr6	41369871	41370230	+	0	NA	Intergenic	AluJr|SINE|Alu	34442	NM_001199510	9436		NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding
126834	chr2	31137501	31137950	+	0	NA	intron (NM_001253826, intron 1 of 15)	CpG	715	NM_001329096	79623		NM_024572	ENSG00000158089	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
74222	chr15	56365151	56365800	+	0	NA	promoter-TSS (NM_001385044)	promoter-TSS (NM_001385044)	49	NM_001385049	374618		NM_198524	ENSG00000151575	TEX9	-	testis expressed 9	protein-coding
125366	chr2	11126971	11127480	+	0	NA	intron (NR_040080, intron 3 of 8)	intron (NR_040080, intron 3 of 8)	4951	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
80614	chr16	2964681	2965830	+	0	NA	intron (NM_172229, intron 2 of 8)	CpG-9143	980	NM_172229	79412		NM_024507	ENSG00000131650	KREMEN2	KRM2	kringle containing transmembrane protein 2	protein-coding
82909	chr16	21648351	21648450	+	0	NA	intron (NM_005849, intron 1 of 5).2	MIRb|SINE|MIR	4208	NM_005849	10261		NM_005849	ENSG00000140749	IGSF6	DORA	immunoglobulin superfamily member 6	protein-coding
36736	chr11	9262421	9263280	+	0	NA	intron (NM_001243254, intron 1 of 22)	AluY|SINE|Alu	2476	NR_145966	23258		NM_015213	ENSG00000184014	DENND5A	DEE49|EIEE49|RAB6IP1	DENN domain containing 5A	protein-coding
27912	chr10	41896801	41897600	+	0	NA	Intergenic	(AATGG)n|Simple_repeat|Simple_repeat	470845	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
111326	chr19	3629521	3630700	+	0	NA	TTS (NM_012398)	TTS (NM_012398)	-3295	NM_021231	58509		NM_021231	ENSG00000105298	CACTIN	C19orf29|NY-REN-24|fSAPc	cactin, spliceosome C complex subunit	protein-coding
192738	chr6	26380921	26381380	+	0	NA	Intergenic	Intergenic	-1958	NM_181531	10385		NM_006995	ENSG00000124508	BTN2A2	BT2.2|BTF2|BTN2.2	butyrophilin subfamily 2 member A2	protein-coding
146541	chr20	49979021	49979950	+	0	NA	Intergenic	Intergenic	-3495	NM_005985	6615		NM_005985	ENSG00000124216	SNAI1	SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1	snail family transcriptional repressor 1	protein-coding
57738	chr12	122898401	122899300	+	0	NA	Intergenic	Intergenic	-2726	NM_024667	79720		NM_024667	ENSG00000139722	VPS37B	-	VPS37B subunit of ESCRT-I	protein-coding
87873	chr16	78002921	78003330	+	0	NA	Intergenic	Intergenic	-19423	NM_005752	10143		NM_005752	ENSG00000166509	CLEC3A	CLECSF1	C-type lectin domain family 3 member A	protein-coding
189270	chr5	172069551	172069950	+	0	NA	intron (NM_005990, intron 12 of 18)	L1MEf|LINE|L1	-63112	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
63489	chr13	114176971	114177550	+	0	NA	Intergenic	Intergenic	-44637	NM_001320821	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
95793	chr17	38718251	38719050	+	0	NA	intron (NM_005937, intron 12 of 19)	MIRc|SINE|MIR	-1041	NR_039879	100616153		NR_039879	ENSG00000273627	MIR4726	-	microRNA 4726	ncRNA
165948	chr3	107643251	107643550	+	0	NA	intron (NM_020235, intron 2 of 16)	intron (NM_020235, intron 2 of 16)	120438	NM_001142568	56987		NM_020235	ENSG00000114439	BBX	ARTC1|HBP2|HSPC339|MDS001	BBX high mobility group box domain containing	protein-coding
174588	chr4	40249271	40249430	+	0	NA	Intergenic	Intergenic	52319	NM_004310	399		NM_004310	ENSG00000168421	RHOH	ARHH|TTF	ras homolog family member H	protein-coding
16584	chr1	155015321	155015580	+	0	NA	exon (NM_001252406, exon 4 of 5)	exon (NM_001252406, exon 4 of 5)	12648	NM_001256455	51043		NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX|vGAF	zinc finger and BTB domain containing 7B	protein-coding
43023	chr11	74000351	74000650	+	0	NA	3' UTR (NM_003356, exon 7 of 7)	3' UTR (NM_003356, exon 7 of 7)	8585	NM_003356	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
49652	chr12	28640371	28640730	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-449812	NR_148936	729291		NR_148936		LOC729291	-	uncharacterized LOC729291	ncRNA
55845	chr12	109092971	109094350	+	0	NA	promoter-TSS (NM_001001655)	promoter-TSS (NM_001001655)	-172	NM_001205180	121642		NM_001001655	ENSG00000189046	ALKBH2	ABH2	alkB homolog 2, alpha-ketoglutarate dependent dioxygenase	protein-coding
24129	chr1	235816821	235817630	+	0	NA	intron (NM_001301365, intron 3 of 52)	L1PA15|LINE|L1	35835	NR_031718	100302139		NR_031718	ENSG00000222831	MIR1537	MIRN1537|hsa-mir-1537|mir-1537	microRNA 1537	ncRNA
173241	chr4	6941751	6943200	+	0	NA	intron (NM_020773, intron 2 of 13)	intron (NM_020773, intron 2 of 13)	-11691	NM_001330638	57533		NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding
48600	chr12	10322251	10322550	+	0	NA	non-coding (NR_147040, exon 5 of 5)	non-coding (NR_147040, exon 5 of 5)	14530	NR_147040	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
30349	chr10	77799251	77799730	+	0	NA	intron (NM_004747, intron 27 of 31).2	MLT1B|LTR|ERVL-MaLR	127265	NM_004747	9231		NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG|YUVOB	discs large MAGUK scaffold protein 5	protein-coding
6878	chr1	31299971	31300730	+	0	NA	intron (NM_001282566, intron 1 of 6)	AluJb|SINE|Alu	3318	NM_016505	51538		NM_016505	ENSG00000121766	ZCCHC17	HSPC251|PS1D|pNO40	zinc finger CCHC-type containing 17	protein-coding
19096	chr1	171434801	171435280	+	0	NA	Intergenic	Intergenic	-50490	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
190868	chr6	2129071	2129430	+	0	NA	intron (NM_001500, intron 1 of 10)	intron (NM_001500, intron 1 of 10)	46741	NM_001253846	2762		NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding
151778	chr22	18079601	18080000	+	0	NA	intron (NM_001199319, intron 2 of 4)	intron (NM_001199319, intron 2 of 4)	1810	NM_001127649	55670		NM_017929	ENSG00000215193	PEX26	PBD7A|PBD7B|PEX26M1T|Pex26pM1T	peroxisomal biogenesis factor 26	protein-coding
229111	chr9	114394551	114396350	+	0	NA	Intergenic	L2|LINE|L2	-1045	NM_030767	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
133433	chr2	119339201	119339800	+	0	NA	intron (NM_001322329, intron 3 of 6)	intron (NM_001322329, intron 3 of 6)	27242	NM_001017927	130355		NM_001017927	ENSG00000186132	C2orf76	AIM29	chromosome 2 open reading frame 76	protein-coding
97916	chr17	45139451	45139750	+	0	NA	intron (NM_001135705, intron 9 of 9)	intron (NM_001135705, intron 9 of 9)	3913	NM_001135707	79777		NM_024722	ENSG00000181513	ACBD4	HMFT0700	acyl-CoA binding domain containing 4	protein-coding
57569	chr12	122243221	122244280	+	0	NA	intron (NM_001351018, intron 7 of 12)	AluJb|SINE|Alu	-16294	NM_019887	56616		NM_019887	ENSG00000184047	DIABLO	DFNA64|SMAC	diablo IAP-binding mitochondrial protein	protein-coding
124797	chr2	7459951	7460050	+	0	NA	Intergenic	L1MD2|LINE|L1	38739	NR_038432	100506274		NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA
159743	chr3	15953971	15954130	+	0	NA	Intergenic	Intergenic	80279	NR_030289	693148		NR_030289	ENSG00000207815	MIR563	MIRN563|hsa-mir-563	microRNA 563	ncRNA
156540	chr22	41428371	41429950	+	0	NA	Intergenic	AluSx|SINE|Alu	17641	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
9835	chr1	54124601	54124800	+	0	NA	Intergenic	Intergenic	28481	NM_201546	200008		NM_201546	ENSG00000157211	CDCP2	-	CUB domain containing protein 2	protein-coding
60897	chr13	46158601	46158800	+	0	NA	intron (NM_002298, intron 3 of 15)	intron (NM_002298, intron 3 of 15)	23477	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
79278	chr16	531521	531930	+	0	NA	intron (NM_005632, intron 1 of 13)	intron (NM_005632, intron 1 of 13)	-3591	NR_049852	100847028		NR_049852	ENSG00000266124	MIR5587	-	microRNA 5587	ncRNA
187150	chr5	140551901	140552650	+	0	NA	intron (NM_001035235, intron 2 of 4)	intron (NM_001035235, intron 2 of 4)	4613	NM_003732	8637		NM_003732	ENSG00000243056	EIF4EBP3	4E-BP3|4EBP3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding
96159	chr17	39685601	39686230	+	0	NA	intron (NM_033419, intron 2 of 7)	intron (NM_033419, intron 2 of 7)	2142	NM_033419	93210		NM_033419	ENSG00000161395	PGAP3	AGLA546|CAB2|PERLD1|PP1498|hCOS16	post-GPI attachment to proteins phospholipase 3	protein-coding
138844	chr2	216506651	216506950	+	0	NA	Intergenic	LTR101_Mam|LTR|ERVL	7956	NM_000998	6168		NM_000998	ENSG00000197756	RPL37A	L37A|eL43	ribosomal protein L37a	protein-coding
181578	chr5	43286721	43286980	+	0	NA	TTS (NM_001324219)	TTS (NM_001324219)	26331	NM_001330663	3157		NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding
219936	chr8	86618821	86619130	+	0	NA	intron (NM_019098, intron 13 of 17)	intron (NM_019098, intron 13 of 17)	104540	NM_003909	8895		NM_003909	ENSG00000085719	CPNE3	CPN3|PRO1071	copine 3	protein-coding
153284	chr22	24163571	24163730	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-17837	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
201843	chr6	150143921	150144380	+	0	NA	intron (NM_030949, intron 1 of 3)	intron (NM_030949, intron 1 of 3)	1106	NM_030949	81706		NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1 regulatory inhibitor subunit 14C	protein-coding
218226	chr8	42037571	42038080	+	0	NA	intron (NM_001305878, intron 2 of 13)	intron (NM_001305878, intron 2 of 13)	-13925	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
103480	chr17	78352621	78353980	+	0	NA	Intergenic	CpG	6367	NM_001378932	9021		NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding
77453	chr15	84346551	84347050	+	0	NA	Intergenic	Intergenic	-75719	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
186740	chr5	139300701	139301500	+	0	NA	intron (NM_001194956, intron 1 of 13)	AluSq2|SINE|Alu	7350	NM_001194956	9782		NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding
9537	chr1	51504801	51505730	+	0	NA	intron (NM_001981, intron 1 of 24)	L1MB7|LINE|L1	14001	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
189543	chr5	173962971	173963130	+	0	NA	Intergenic	Intergenic	-26120	NM_001144954	133491		NM_001144954	ENSG00000185056	C5orf47	-	chromosome 5 open reading frame 47	protein-coding
232120	chr9	133787751	133787850	+	0	NA	intron (NM_001134398, intron 15 of 29)	intron (NM_001134398, intron 15 of 29)	-47845	NM_007101	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
2041	chr1	7755421	7755680	+	0	NA	intron (NM_001349613, intron 11 of 11)	intron (NM_001349613, intron 11 of 11)	-15746	NM_004781	9341		NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding
209878	chr7	91089501	91089700	+	0	NA	intron (NM_012395, intron 11 of 13)	intron (NM_012395, intron 11 of 13)	-174833	NM_003505	8321		NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
132626	chr2	108620651	108621750	+	0	NA	promoter-TSS (NM_001193484)	promoter-TSS (NM_001193484)	-51	NM_001193484	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
20997	chr1	202789721	202789980	+	0	NA	intron (NM_006618, intron 1 of 26)	AluJr|SINE|Alu	18571	NM_006618	10765		NM_006618	ENSG00000117139	KDM5B	CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1	lysine demethylase 5B	protein-coding
76256	chr15	74048251	74049630	+	0	NA	Intergenic	AluSz|SINE|Alu	33610	NM_001038640	342096		NM_001038640	ENSG00000159289	GOLGA6A	GLP|GOLGA6	golgin A6 family member A	protein-coding
156273	chr22	40438151	40438750	+	0	NA	intron (NM_001282661, intron 4 of 13)	MamSINE1|SINE|tRNA-RTE	24990	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
141476	chr2	241080771	241080930	+	0	NA	intron (NR_138463, intron 6 of 6)	L1MC5a|LINE|L1	21437	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
144155	chr20	34054421	34054680	+	0	NA	intron (NM_016732, intron 2 of 9)	AluSz|SINE|Alu	5431	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
129785	chr2	71269251	71269350	+	0	NA	Intergenic	L1PA8|LINE|L1	-42197	NM_020459	400961		NM_020459	ENSG00000124374	PAIP2B	-	poly(A) binding protein interacting protein 2B	protein-coding
190896	chr6	2771171	2771530	+	0	NA	promoter-TSS (NM_001347872)	promoter-TSS (NM_001347872)	-974	NM_001347872	340156		NM_001012418	ENSG00000145949	MYLK4	SgK085	myosin light chain kinase family member 4	protein-coding
169311	chr3	158791051	158791580	+	0	NA	Intergenic	(TTTTC)n|Simple_repeat|Simple_repeat	-10739	NM_022736	64747		NM_022736	ENSG00000118855	MFSD1	Minerva|SMAP4	major facilitator superfamily domain containing 1	protein-coding
74675	chr15	62053471	62053830	+	0	NA	intron (NM_017684, intron 1 of 82)	MIR3|SINE|MIR	6797	NM_017684	54832		NM_017684	ENSG00000129003	VPS13C	BLTP5C|PARK23	vacuolar protein sorting 13 homolog C	protein-coding
74714	chr15	63122301	63123280	+	0	NA	intron (NM_171846, intron 2 of 4)	intron (NM_171846, intron 2 of 4)	929	NM_001288585	114294		NM_032857	ENSG00000103642	LACTB	G24|MRPL56	lactamase beta	protein-coding
47667	chr12	6331571	6331730	+	0	NA	intron (NM_001065, intron 5 of 9)	intron (NM_001065, intron 5 of 9)	10426	NM_001346091	7132		NM_001065	ENSG00000067182	TNFRSF1A	CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60	TNF receptor superfamily member 1A	protein-coding
54184	chr12	78506851	78506950	+	0	NA	Intergenic	L1PA3|LINE|L1	-147154	NR_135021	105369860		NR_135021	ENSG00000258220	LINC02424	-	long intergenic non-protein coding RNA 2424	ncRNA
204174	chr7	2441471	2442130	+	0	NA	3' UTR (NM_001243795, exon 2 of 2)	3' UTR (NM_001243795, exon 2 of 2)	34583	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
3701	chr1	16566921	16567480	+	0	NA	exon (NM_017940, exon 25 of 29)	exon (NM_017940, exon 25 of 29)	18286	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
237573	chrX	123183601	123184250	+	0	NA	promoter-TSS (NM_007325)	promoter-TSS (NM_007325)	-318	NM_000828	2892		NM_000828	ENSG00000125675	GRIA3	GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94|MRXSW|iGluR3	glutamate ionotropic receptor AMPA type subunit 3	protein-coding
165589	chr3	101594751	101595250	+	0	NA	TTS (NM_001320395)	TTS (NM_001320395)	20820	NM_020357	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
174949	chr4	49143921	49145230	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	157933	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
179681	chr4	190067651	190067750	+	0	NA	non-coding (NR_121644, exon 1 of 1)	non-coding (NR_121644, exon 1 of 1)	2471	NM_001306068	100288687		NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
135916	chr2	171523551	171523730	+	0	NA	intron (NM_001127383, intron 1 of 2)	CpG	1166	NM_024843	79901		NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
153330	chr22	24302071	24302630	+	0	NA	exon (NM_015330, exon 3 of 17)	exon (NM_015330, exon 3 of 17)	31519	NM_001254732	23384		NM_015330	ENSG00000100014	SPECC1L	CYTSA|GBBB2|OBLFC1|TBHS|TBHS1	sperm antigen with calponin homology and coiled-coil domains 1 like	protein-coding
147853	chr20	62808001	62808750	+	0	NA	intron (NM_007346, intron 3 of 6)	intron (NM_007346, intron 3 of 6)	-2788	NR_102430	101409261		NR_102430		OGFR-AS1	-	OGFR antisense RNA 1	ncRNA
61900	chr13	77323971	77324400	+	0	NA	intron (NM_015057, intron 1 of 82)	intron (NM_015057, intron 1 of 82)	2909	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
127688	chr2	43206101	43206500	+	0	NA	Intergenic	Intergenic	20306	NM_006887	678		NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|OOMD13|OZEMA13|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding
47378	chr12	2681901	2683650	+	0	NA	intron (NM_199460, intron 46 of 49)	intron (NM_199460, intron 46 of 49)	8382	NR_045725	100652846		NR_045725	ENSG00000246627	CACNA1C-AS1	-	CACNA1C antisense RNA 1	ncRNA
14839	chr1	146366601	146366800	+	0	NA	Intergenic	CpG	-10107	NR_004400	26863		NR_004400	ENSG00000206737	RNVU1-18	RNU1-25|RNU1-25P|RNU1-5|RNU1P1|RNU1P9|U1.15|U1P101|U1P15|vU1.18	RNA, variant U1 small nuclear 18	snRNA
190437	chr5	179840871	179841230	+	0	NA	intron (NM_016175, intron 5 of 6)	intron (NM_016175, intron 5 of 6)	17767	NM_016175	51149		NM_016175	ENSG00000161010	MRNIP	C5orf45	MRN complex interacting protein	protein-coding
188662	chr5	157250021	157250680	+	0	NA	intron (NM_005546, intron 16 of 16)	L1MC3|LINE|L1	-15773	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
130558	chr2	85704801	85705800	+	0	NA	Intergenic	MER21B|LTR|ERVL	10942	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
85084	chr16	33009571	33009730	+	0	NA	Intergenic	Intergenic	-124508	NR_003083	386757		NM_198857	ENSG00000290985	SLC6A10P	CT-2|CT2|SLC6A10|SLC6A10pA	solute carrier family 6 member 10, pseudogene	pseudo
24097	chr1	235416351	235416450	+	0	NA	intron (NM_001287801, intron 4 of 17).2	AluJb|SINE|Alu	48973	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
195769	chr6	40456101	40456900	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	78163	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
107020	chr18	32091401	32093900	+	0	NA	promoter-TSS (NM_198128)	promoter-TSS (NM_198128)	44	NM_001191324	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
67812	chr14	73782851	73783400	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	4083	NM_001043318	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
217521	chr8	29235501	29235700	+	0	NA	intron (NM_015254, intron 2 of 39)	intron (NM_015254, intron 2 of 39)	27470	NM_015254	23303		NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
68703	chr14	90416951	90417050	+	0	NA	Intergenic	FLAM_A|SINE|Alu	18750	NM_001363670	801		NM_006888	ENSG00000198668	CALM1	CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|PHKD1|caM	calmodulin 1	protein-coding
127415	chr2	42110151	42110650	+	0	NA	Intergenic	Intergenic	-58953	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
106356	chr18	13218541	13219080	+	0	NA	promoter-TSS (NM_181482)	promoter-TSS (NM_181482)	50	NM_001378100	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
41110	chr11	65547501	65549530	+	0	NA	intron (NM_001130144, intron 11 of 27)	intron (NM_001130144, intron 11 of 27)	9713	NM_001164266	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
165660	chr3	101854101	101854300	+	0	NA	intron (NM_031419, intron 5 of 11)	intron (NM_031419, intron 5 of 11)	4686	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
12607	chr1	109074501	109074700	+	0	NA	intron (NM_005645, intron 2 of 3)	intron (NM_005645, intron 2 of 3)	1403	NM_005645	6884		NM_005645	ENSG00000197780	TAF13	MRT60|TAF(II)18|TAF2K|TAFII-18|TAFII18	TATA-box binding protein associated factor 13	protein-coding
226810	chr9	77175301	77175830	+	0	NA	Intergenic	Intergenic	-1880	NM_015186	23230		NM_015186	ENSG00000197969	VPS13A	BLTP5A|CHAC|CHOREIN	vacuolar protein sorting 13 homolog A	protein-coding
143004	chr20	20505701	20505900	+	0	NA	intron (NM_020343, intron 33 of 39)	MIR|SINE|MIR	137696	NM_002196	3642		NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
108545	chr18	74498751	74499950	+	0	NA	promoter-TSS (NM_001168499)	promoter-TSS (NM_001168499)	4	NM_001370250	55748		NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	carnosine dipeptidase 2	protein-coding
65726	chr14	53112101	53112430	+	0	NA	intron (NM_030637, intron 1 of 11)	AluSc|SINE|Alu	41058	NM_001160148	80821		NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28|iPLA1I|iPLA1alpha	DDHD domain containing 1	protein-coding
18209	chr1	160983971	160984130	+	0	NA	Intergenic	AluSz|SINE|Alu	-29241	NM_080878	142683		NM_080878	ENSG00000158764	ITLN2	HL-2|HL2	intelectin 2	protein-coding
143331	chr20	25695851	25697230	+	0	NA	intron (NM_015655, intron 1 of 4)	CpG	313	NM_015655	26152		NM_015655	ENSG00000130684	ZNF337	-	zinc finger protein 337	protein-coding
125398	chr2	11500871	11501030	+	0	NA	Intergenic	Intergenic	-33095	NM_014668	9687		NM_014668	ENSG00000196208	GREB1	-	growth regulating estrogen receptor binding 1	protein-coding
45459	chr11	118527601	118527930	+	0	NA	TTS (NM_005933)	TTS (NM_005933)	291	NM_001080441	143941		NM_001080441	ENSG00000172425	TTC36	HBP21	tetratricopeptide repeat domain 36	protein-coding
158859	chr3	9838871	9839230	+	0	NA	exon (NM_173659, exon 8 of 9)	exon (NM_173659, exon 8 of 9)	4958	NM_001351736	285367		NM_173659	ENSG00000156990	RPUSD3	-	RNA pseudouridine synthase D3	protein-coding
41451	chr11	66103021	66103700	+	0	NA	intron (NM_018026, intron 1 of 23)	intron (NM_018026, intron 1 of 23)	33088	NM_018026	55690		NM_018026	ENSG00000175115	PACS1	MRD17|SHMS	phosphofurin acidic cluster sorting protein 1	protein-coding
1182	chr1	2231701	2233400	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	4231	NM_003036	6497		NM_003036	ENSG00000157933	SKI	SGS|SKV	SKI proto-oncogene	protein-coding
224088	chr9	4366701	4366930	+	0	NA	Intergenic	Intergenic	-66747	NM_001042413	169792		NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding
212721	chr7	129802101	129802300	+	0	NA	Intergenic	MER66B|LTR|ERV1	-27186	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
228405	chr9	99167871	99168030	+	0	NA	Intergenic	MamTip3|DNA|hAT-Tip100	53992	NM_033087	85365		NM_033087	ENSG00000119523	ALG2	CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2	ALG2 alpha-1,3/1,6-mannosyltransferase	protein-coding
185844	chr5	132476121	132476680	+	0	NA	TTS (NR_161242)	TTS (NR_161242)	14373	NM_001354924	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
221608	chr8	125582921	125583250	+	0	NA	Intergenic	L1HS|LINE|L1	150876	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
31380	chr10	94320171	94320580	+	0	NA	intron (NM_016341, intron 29 of 32)	intron (NM_016341, intron 29 of 32)	-33305	NR_033969	100128054		NR_033969	ENSG00000268894	PLCE1-AS1	-	PLCE1 antisense RNA 1	ncRNA
192390	chr6	24766551	24767230	+	0	NA	Intergenic	Intergenic	-8047	NM_001251990	51053		NM_015895	ENSG00000112312	GMNN	Gem|MGORS6	geminin DNA replication inhibitor	protein-coding
204620	chr7	5374151	5374450	+	0	NA	exon (NM_001080495, exon 10 of 30)	exon (NM_001080495, exon 10 of 30)	49246	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
28048	chr10	43259151	43259450	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	7765	NM_145313	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
2326	chr1	9143301	9143500	+	0	NA	Intergenic	Intergenic	8377	NR_029610	407040		NR_029610	ENSG00000284357	MIR34A	MIRN34A|miRNA34A|mir-34|mir-34a	microRNA 34a	ncRNA
87001	chr16	68239071	68239300	+	0	NA	Intergenic	AluSx4|SINE|Alu	-3058	NM_024939	80004		NM_024939	ENSG00000103067	ESRP2	RBM35B	epithelial splicing regulatory protein 2	protein-coding
43393	chr11	77090851	77091580	+	0	NA	intron (NM_004055, intron 2 of 12)	intron (NM_004055, intron 2 of 12)	-11625	NM_006189	4975		NM_006189	ENSG00000254550	OMP	-	olfactory marker protein	protein-coding
49725	chr12	31323171	31324900	+	0	NA	promoter-TSS (NR_026806)	promoter-TSS (NR_026806)	-281	NR_026806	79857		NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA
104126	chr17	80355521	80355780	+	0	NA	intron (NR_029376, intron 1 of 1)	intron (NR_029376, intron 1 of 1)	-59517	NR_148045	284131		NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding
232773	chr9	136684951	136685280	+	0	NA	intron (NM_006412, intron 1 of 5)	intron (NM_006412, intron 1 of 5)	2342	NM_001012727	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
99666	chr17	50724401	50725450	+	0	NA	intron (NM_001330330, intron 1 of 10)	AluSz|SINE|Alu	5322	NM_016424	51747		NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding
166863	chr3	123492151	123492560	+	0	NA	3' UTR (NM_001329787, exon 7 of 7)	3' UTR (NM_001329787, exon 7 of 7)	-43265	NM_183357	111		NM_183357	ENSG00000173175	ADCY5	AC5|DSKOD|FDFM	adenylate cyclase 5	protein-coding
143837	chr20	32514751	32515050	+	0	NA	intron (NM_001256798, intron 3 of 10)	intron (NM_001256798, intron 3 of 10)	4941	NR_110619	101929698		NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA
19326	chr1	173455051	173455550	+	0	NA	intron (NR_125960, intron 1 of 1)	LTR50|LTR|ERVL	6062	NR_125960	101928673		NR_125960	ENSG00000203739	PRDX6-AS1	-	PRDX6 antisense RNA 1	ncRNA
221958	chr8	129958651	129959750	+	0	NA	intron (NM_001353279, intron 2 of 13)	intron (NM_001353279, intron 2 of 13)	-19389	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
170941	chr3	194327901	194329630	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-15961	NR_024480	100131551		NR_024480	ENSG00000214145	LINC00887	ACLY-BP|HEIRCC	long intergenic non-protein coding RNA 887	ncRNA
225613	chr9	36192951	36193330	+	0	NA	intron (NM_001184762, intron 1 of 2)	intron (NM_001184762, intron 1 of 2)	2219	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
22185	chr1	212315701	212316350	+	0	NA	intron (NM_001199756, intron 1 of 12)	Tigger1|DNA|TcMar-Tigger	14167	NM_001199756	5525		NM_006243	ENSG00000066027	PPP2R5A	B56A|B56alpha|PR61A	protein phosphatase 2 regulatory subunit B'alpha	protein-coding
218077	chr8	38929221	38929680	+	0	NA	intron (NM_021623, intron 2 of 11)	intron (NM_021623, intron 2 of 11)	28104	NM_021623	59339		NM_021623	ENSG00000169499	PLEKHA2	TAPP2	pleckstrin homology domain containing A2	protein-coding
57820	chr12	123200551	123201130	+	0	NA	intron (NR_103517, intron 11 of 23)	AluSz|SINE|Alu	32301	NM_022782	10198		NM_022782	ENSG00000051825	MPHOSPH9	MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding
172697	chr4	2765601	2766200	+	0	NA	Intergenic	AluJb|SINE|Alu	-9564	NM_024309	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
78340	chr15	91025221	91025480	+	0	NA	intron (NR_110104, intron 2 of 3)	intron (NR_110104, intron 2 of 3)	2728	NR_110104	101926911		NR_110104	ENSG00000214432	VPS33B-DT	-	VPS33B divergent transcript	ncRNA
167927	chr3	136179921	136180480	+	0	NA	intron (NM_018133, intron 1 of 1)	Charlie21a|DNA|hAT-Charlie	14268	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
199880	chr6	127817471	127818330	+	0	NA	intron (NM_001010923, intron 3 of 5).2	L1MCa|LINE|L1	37288	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
232674	chr9	136512521	136513380	+	0	NA	intron (NM_017617, intron 15 of 33)	intron (NM_017617, intron 15 of 33)	6676	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
184056	chr5	91434171	91434700	+	0	NA	Intergenic	Intergenic	-51118	NM_020801	57561		NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding
188916	chr5	160390821	160391380	+	0	NA	Intergenic	Intergenic	8954	NM_022090	63920		NM_022090	ENSG00000221886	FAM200C	Buster3|C5orf54|ZBED8	family with sequence similarity 200 member C	protein-coding
82136	chr16	14742051	14743050	+	0	NA	Intergenic	CpG	-8263	NM_001277324	642799		NM_001277324	ENSG00000254852	NPIPA2	NPIP|NPIPA1	nuclear pore complex interacting protein family member A2	protein-coding
76776	chr15	77002621	77004530	+	0	NA	intron (NR_135552, intron 1 of 11)	AluSx|SINE|Alu	8449	NM_003978	9051		NM_003978	ENSG00000140368	PSTPIP1	CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP	proline-serine-threonine phosphatase interacting protein 1	protein-coding
201221	chr6	143554071	143554430	+	0	NA	non-coding (NR_110149, exon 3 of 3)	non-coding (NR_110149, exon 3 of 3)	7801	NR_110149	285740		NR_027113	ENSG00000235740	PHACTR2-AS1	NR027113|lncIHS	PHACTR2 antisense RNA 1	ncRNA
81532	chr16	9099351	9100050	+	0	NA	intron (NM_014117, intron 2 of 3)	intron (NM_014117, intron 2 of 3)	8056	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
5333	chr1	25250671	25251750	+	0	NA	intron (NR_135788, intron 1 of 3)	MLT1E2|LTR|ERVL-MaLR	-3691	NR_135143	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
5285	chr1	25103251	25103450	+	0	NA	Intergenic	Intergenic	79847	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
6528	chr1	28570971	28571130	+	0	NA	intron (NM_017846, intron 6 of 8)	AluSc8|SINE|Alu	7772	NR_003077	692212		NR_003077	ENSG00000221539	SNORD99	HBII-420	small nucleolar RNA, C/D box 99	snoRNA
118274	chr19	35273071	35273230	+	0	NA	intron (NM_001321150, intron 5 of 7)	intron (NM_001321150, intron 5 of 7)	4188	NM_207291	7392		NM_003367	ENSG00000105698	USF2	FIP|bHLHb12	upstream transcription factor 2, c-fos interacting	protein-coding
153766	chr22	29480671	29481330	+	0	NA	exon (NM_021076, exon 1 of 4)	exon (NM_021076, exon 1 of 4)	782	NM_021076	4744		NM_021076	ENSG00000100285	NEFH	CMT2CC|NFH	neurofilament heavy chain	protein-coding
214892	chr7	151427871	151428750	+	0	NA	TTS (NM_001308292)	TTS (NM_001308292)	5329	NR_037468	100500835		NR_037468	ENSG00000265810	MIR3907	-	microRNA 3907	ncRNA
29662	chr10	71964151	71964250	+	0	NA	promoter-TSS (NM_004273)	promoter-TSS (NM_004273)	-195	NM_004273	9469		NM_004273	ENSG00000122863	CHST3	C6ST|C6ST1|HSD	carbohydrate sulfotransferase 3	protein-coding
143496	chr20	31229971	31230130	+	0	NA	Intergenic	Intergenic	-27614	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
79758	chr16	1357151	1357630	+	0	NA	intron (NM_032520, intron 3 of 10)	intron (NM_032520, intron 3 of 10)	5459	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
135662	chr2	168459151	168459250	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	2928	NM_001256126	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
146325	chr20	49226251	49226850	+	0	NA	intron (NM_017895, intron 7 of 20)	intron (NM_017895, intron 7 of 20)	7134	NM_001348187	55661		NM_017895	ENSG00000124228	DDX27	DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1	DEAD-box helicase 27	protein-coding
177642	chr4	121218271	121218430	+	0	NA	intron (NM_001244764, intron 1 of 12)	intron (NM_001244764, intron 1 of 12)	-1723	NM_001128843	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
91585	chr17	5227181	5228130	+	0	NA	intron (NR_152840, intron 5 of 5)	intron (NR_152840, intron 5 of 5)	7205	NM_001319190	388325		NM_207103	ENSG00000161929	SCIMP	C17orf87|UNQ5783	SLP adaptor and CSK interacting membrane protein	protein-coding
181986	chr5	55220421	55221400	+	0	NA	intron (NM_001190787, intron 6 of 6)	CpG	6405	NM_001190787	345643		NM_001190787	ENSG00000234602	MCIDAS	CILD42|IDAS|MCI|MCIN	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
66787	chr14	64698801	64699600	+	0	NA	Intergenic	Intergenic	-5224	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
225714	chr9	36748371	36748600	+	0	NA	Intergenic	Intergenic	75114	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA
96357	chr17	40086321	40087080	+	0	NA	intron (NM_199334, intron 6 of 8)	intron (NM_199334, intron 6 of 8)	13889	NM_021724	9572		NM_021724	ENSG00000126368	NR1D1	EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding
183598	chr5	80196971	80197530	+	0	NA	intron (NM_001174072, intron 2 of 11)	AluSx1|SINE|Alu	58798	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
169817	chr3	177111001	177111650	+	0	NA	intron (NM_001374330, intron 1 of 14)	AluSz|SINE|Alu	85153	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
98293	chr17	46228401	46229130	+	0	NA	Intergenic	Intergenic	-3398	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
222923	chr8	142984221	142984680	+	0	NA	intron (NR_026913, intron 1 of 1)	LTR83|LTR|ERVL	-11378	NR_102426	100128627		NR_102426		CDC42P3	-	CDC42 pseudogene 3	pseudo
209907	chr7	92133021	92135750	+	0	NA	promoter-TSS (NM_000786)	promoter-TSS (NM_000786)	92	NM_000786	1595		NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding
131041	chr2	88239551	88240450	+	0	NA	Intergenic	Intergenic	69654	NM_018271	55258		NM_018271	ENSG00000144115	THNSL2	SOFAT|THS2|TSH2	threonine synthase like 2	protein-coding
127293	chr2	38743901	38744950	+	0	NA	3' UTR (NM_001195446, exon 7 of 7)	3' UTR (NM_001195446, exon 7 of 7)	6936	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
139909	chr2	230734571	230734930	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	21202	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
142151	chr20	2800521	2801450	+	0	NA	promoter-TSS (NM_001184699)	promoter-TSS (NM_001184699)	-358	NM_001184699	56265		NM_019609	ENSG00000088882	CPXM1	CPX1|CPXM	carboxypeptidase X, M14 family member 1	protein-coding
59433	chr13	25762821	25763280	+	0	NA	intron (NM_016529, intron 25 of 36)	intron (NM_016529, intron 25 of 36)	288966	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
119028	chr19	38926651	38927280	+	0	NA	intron (NM_001145901, intron 1 of 16).2	AluSx|SINE|Alu	3798	NM_017827	54938		NM_017827	ENSG00000104835	SARS2	SARS|SARSM|SERS|SYS|SerRS|SerRSmt|mtSerRS	seryl-tRNA synthetase 2, mitochondrial	protein-coding
83898	chr16	28983001	28983480	+	0	NA	exon (NM_001142450, exon 11 of 13)	exon (NM_001142450, exon 11 of 13)	-1563	NM_001014989	27040		NM_014387	ENSG00000213658	LAT	IMD52|LAT1|pp36	linker for activation of T cells	protein-coding
30147	chr10	74128051	74128530	+	0	NA	intron (NM_207012, intron 7 of 9)	AluSz|SINE|Alu	22538	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
116562	chr19	18229371	18230250	+	0	NA	intron (NM_001330172, intron 2 of 15)	L2c|LINE|L2	-3372	NM_001369701	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
175183	chr4	56410451	56410750	+	0	NA	intron (NR_156493, intron 1 of 10)	intron (NR_156493, intron 1 of 10)	-23092	NM_001286671	132949		NM_181806	ENSG00000157426	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding
24327	chr1	237799801	237800100	+	0	NA	intron (NM_001035, intron 97 of 104)	intron (NM_001035, intron 97 of 104)	-62225	NR_027247	100130331		NR_027247	ENSG00000237250	LOC100130331	-	POTE ankyrin domain family, member F pseudogene	pseudo
153798	chr22	29625601	29626100	+	0	NA	intron (NM_181830, intron 1 of 14)	intron (NM_181830, intron 1 of 14)	22217	NM_181829	4771		NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH|SWNV|merlin-1	NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor	protein-coding
216251	chr8	12426301	12426500	+	0	NA	intron (NR_148877, intron 4 of 4).2	intron (NR_148877, intron 4 of 4).2	-8368	NR_073395	389633		NR_036463		FAM90A25P	FAM90A2P	Putative protein FAM90A2P	pseudo
113718	chr19	10457121	10457630	+	0	NA	intron (NM_001111307, intron 7 of 14)	intron (NM_001111307, intron 7 of 14)	4443	NM_006202	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
137457	chr2	197009951	197010700	+	0	NA	intron (NR_160034, intron 19 of 28)	intron (NR_160034, intron 19 of 28)	-83618	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
226204	chr9	65385001	65385280	+	0	NA	Intergenic	SST1|Satellite|centr	-99931	NM_001126334	653427		NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4 like 5	protein-coding
89210	chr16	88616721	88616980	+	0	NA	intron (NM_144604, intron 8 of 17)	intron (NM_144604, intron 8 of 17)	-21722	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
207459	chr7	44605851	44607750	+	0	NA	intron (NM_001363523, intron 1 of 23)	CpG	173	NM_001165036	4967		NM_002541	ENSG00000105953	OGDH	AKGDH|E1k|E1o|KGD1|OGDC|OGDH-E1|OGDH2|OGDHD	oxoglutarate dehydrogenase	protein-coding
197538	chr6	78971871	78972030	+	0	NA	intron (NM_017934, intron 24 of 39)	L1PA3|LINE|L1	104399	NM_001010844	134728		NM_001010844	ENSG00000146243	IRAK1BP1	AIP70|SIMPL	interleukin 1 receptor associated kinase 1 binding protein 1	protein-coding
143468	chr20	31054801	31055200	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-202664	NM_001037730	245929		NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
178108	chr4	140810941	140811130	+	0	NA	Intergenic	Intergenic	-54650	NM_015130	23158		NM_015130	ENSG00000109436	TBC1D9	GRAMD9|MDR1	TBC1 domain family member 9	protein-coding
139659	chr2	226837471	226837630	+	0	NA	intron (NM_001349071, intron 1 of 6)	AluSx1|SINE|Alu	1496	NM_001349072	84236		NM_032276	ENSG00000144468	RHBDD1	RHBDL4|RRP4	rhomboid domain containing 1	protein-coding
209657	chr7	77936171	77936330	+	0	NA	intron (NM_001366086, intron 10 of 17)	intron (NM_001366086, intron 10 of 17)	96120	NM_001127359	57157		NM_020432	ENSG00000006576	PHTF2	-	putative homeodomain transcription factor 2	protein-coding
196181	chr6	42628401	42628800	+	0	NA	intron (NM_001363705, intron 11 of 46)	AluSx1|SINE|Alu	64571	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
125730	chr2	20652521	20652850	+	0	NA	Intergenic	Intergenic	-1587	NM_022460	64342		NM_022460	ENSG00000118960	HS1BP3	ETM2|HS1-BP3	HCLS1 binding protein 3	protein-coding
162094	chr3	46897771	46897930	+	0	NA	intron (NM_001184744, intron 4 of 14)	intron (NM_001184744, intron 4 of 14)	15601	NM_001184744	5745		NM_000316	ENSG00000160801	PTH1R	EKNS|PFE|PTHR|PTHR1	parathyroid hormone 1 receptor	protein-coding
173823	chr4	18057071	18058030	+	0	NA	Intergenic	AluSz6|SINE|Alu	-35675	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
27657	chr10	33027021	33027680	+	0	NA	Intergenic	Intergenic	-69120	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
2113	chr1	8150771	8151850	+	0	NA	Intergenic	AluSz|SINE|Alu	-57362	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
152150	chr22	20012001	20012730	+	0	NA	intron (NM_001670, intron 1 of 19)	intron (NM_001670, intron 1 of 19)	4458	NM_001670	421		NM_001670	ENSG00000099889	ARVCF	-	ARVCF delta catenin family member	protein-coding
183566	chr5	80142201	80142800	+	0	NA	3' UTR (NM_001174072, exon 12 of 12)	3' UTR (NM_001174072, exon 12 of 12)	-58835	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
83191	chr16	23498051	23498480	+	0	NA	intron (NM_015044, intron 1 of 16)	AluSx|SINE|Alu	12229	NM_015044	23062		NM_015044	ENSG00000103365	GGA2	VEAR	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding
174976	chr4	49639051	49639630	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	652698	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
116475	chr19	18102751	18103080	+	0	NA	intron (NM_015016, intron 1 of 26)	intron (NM_015016, intron 1 of 26)	-4099	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
217345	chr8	27763751	27764180	+	0	NA	intron (NR_156432, intron 2 of 7)	intron (NR_156432, intron 2 of 7)	8675	NM_001304532	55246		NM_018246	ENSG00000147419	CCDC25	-	coiled-coil domain containing 25	protein-coding
124542	chr2	319071	319330	+	0	NA	intron (NR_146953, intron 2 of 3)	intron (NR_146953, intron 2 of 3)	2916	NR_146953	105373350		NR_146953		LINC01865	-	long intergenic non-protein coding RNA 1865	ncRNA
15709	chr1	151009951	151010650	+	0	NA	intron (NR_130130, intron 1 of 3)	AluJo|SINE|Alu	1851	NR_130135	58497		NM_021222	ENSG00000143363	PRUNE1	DRES-17|DRES17|H-PRUNE|HTCD37|NMIHBA|PRUNE	prune exopolyphosphatase 1	protein-coding
11701	chr1	91857701	91857900	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	28351	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
150984	chr21	44336971	44337350	+	0	NA	intron (NM_001271442, intron 2 of 7)	intron (NM_001271442, intron 2 of 7)	1178	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
40430	chr11	64183901	64184100	+	0	NA	Intergenic	L2a|LINE|L2	-1272	NM_001282652	10963		NM_006819	ENSG00000168439	STIP1	HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L	stress induced phosphoprotein 1	protein-coding
4377	chr1	20728601	20729450	+	0	NA	intron (NM_001103161, intron 1 of 9)	intron (NM_001103161, intron 1 of 9)	3678	NM_001103160	400745		NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
217870	chr8	37848321	37848580	+	0	NA	intron (NM_018310, intron 2 of 3)	AluSx|SINE|Alu	1411	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
239002	chrX	156016201	156016930	+	0	NA	intron (NR_138048, intron 1 of 1)	intron (NR_138048, intron 1 of 1)	265	NR_138048	100128260		NR_138048	ENSG00000185203	WASIR1	NCRNA00286B	WASH and IL9R antisense RNA 1	ncRNA
34635	chr10	133312601	133313000	+	0	NA	promoter-TSS (NR_046330)	promoter-TSS (NR_046330)	-463	NR_046330	10844		NM_006659	ENSG00000130640	TUBGCP2	ALP4|GCP-2|GCP2|Grip103|PAMDDFS|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97	tubulin gamma complex component 2	protein-coding
39989	chr11	62620321	62620750	+	0	NA	exon (NM_012200, exon 2 of 5)	exon (NM_012200, exon 2 of 5)	1451	NM_001288722	26229		NM_012200	ENSG00000149541	B3GAT3	GLCATI|JDSCD|glcUAT-I	beta-1,3-glucuronyltransferase 3	protein-coding
75007	chr15	64004051	64004350	+	0	NA	intron (NM_001385000, intron 2 of 11)	L1MC5|LINE|L1	42285	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
49917	chr12	39619441	39620600	+	0	NA	promoter-TSS (NM_005164)	promoter-TSS (NM_005164)	-217	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
84547	chr16	30559871	30560030	+	0	NA	Intergenic	LTR2|LTR|ERV1	-1576	NM_001172679	92595		NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
65203	chr14	49690071	49690230	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	-1770	NM_001197330	5427		NM_002692	ENSG00000100479	POLE2	DPE2	DNA polymerase epsilon 2, accessory subunit	protein-coding
4949	chr1	23972071	23972900	+	0	NA	intron (NM_001191007, intron 3 of 5)	AluSz|SINE|Alu	7842	NM_001191009	10772		NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding
68226	chr14	76929851	76931130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-29148	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
141449	chr2	241038921	241039430	+	0	NA	intron (NM_001080437, intron 6 of 31)	intron (NM_001080437, intron 6 of 31)	40557	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
211374	chr7	105005451	105005550	+	0	NA	Intergenic	Intergenic	8641	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
48479	chr12	9793271	9793430	+	0	NA	Intergenic	Intergenic	-6702	NR_159359	51348		NM_016523	ENSG00000150045	KLRF1	CLEC5C|NKp80	killer cell lectin like receptor F1	protein-coding
90484	chr17	1396601	1397450	+	0	NA	intron (NR_024058, intron 1 of 6)	AluSx|SINE|Alu	3197	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
108321	chr18	63450451	63450580	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-26443	NM_002639	5268		NM_002639	ENSG00000206075	SERPINB5	PI5|maspin	serpin family B member 5	protein-coding
9253	chr1	46197821	46199030	+	0	NA	promoter-TSS (NM_017739)	promoter-TSS (NM_017739)	9	NM_017739	55624		NM_017739	ENSG00000085998	POMGNT1	GNTI.2|GnT I.2|LGMD2O|LGMDR15|MEB|MGAT1.2|RP76|gnT-I.2	protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)	protein-coding
122322	chr19	49136771	49136950	+	0	NA	exon (NM_003660, exon 15 of 30)	exon (NM_003660, exon 15 of 30)	17316	NR_103842	8541		NM_003660	ENSG00000177380	PPFIA3	LPNA3	PTPRF interacting protein alpha 3	protein-coding
39238	chr11	57659201	57659600	+	0	NA	intron (NM_006831, intron 1 of 2)	intron (NM_006831, intron 1 of 2)	1638	NM_006831	10978		NM_006831	ENSG00000172409	CLP1	HEAB|hClp1	cleavage factor polyribonucleotide kinase subunit 1	protein-coding
69107	chr14	92446871	92447180	+	0	NA	intron (NM_153647, intron 9 of 17)	intron (NM_153647, intron 9 of 17)	-66756	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
38164	chr11	36288001	36288200	+	0	NA	intron (NM_001307937, intron 1 of 6)	MIR3|SINE|MIR	1324	NM_001307932	29099		NM_014186	ENSG00000110442	COMMD9	C11orf55|HSPC166|LINC00610	COMM domain containing 9	protein-coding
126007	chr2	25316221	25316680	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	12271	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
80255	chr16	2217921	2218180	+	0	NA	Intergenic	AluSx|SINE|Alu	-3210	NM_001042371	283871		NM_001042371	ENSG00000184207	PGP	AUM|G3PP|PGPase	phosphoglycolate phosphatase	protein-coding
238823	chrX	154434271	154434430	+	0	NA	exon (NM_001183, exon 7 of 10)	exon (NM_001183, exon 7 of 10)	-2804	NM_001493	2664		NM_001493	ENSG00000203879	GDI1	1A|GDIL|MRX41|MRX48|OPHN2|RABGD1A|RABGDIA|XAP-4|XLID41	GDP dissociation inhibitor 1	protein-coding
97317	chr17	43247501	43248050	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1911	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
125098	chr2	9735171	9735630	+	0	NA	Intergenic	L2c|LINE|L2	-104403	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
18239	chr1	161047071	161047400	+	0	NA	3' UTR (NM_001287602, exon 8 of 8)	3' UTR (NM_001287602, exon 8 of 8)	-1258	NM_007122	7391		NM_007122	ENSG00000158773	USF1	FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11	upstream transcription factor 1	protein-coding
101824	chr17	73593471	73593830	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	50795	NM_001144952	54549		NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding
143031	chr20	21104751	21104850	+	0	NA	intron (NR_147212, intron 1 of 2)	intron (NR_147212, intron 1 of 2)	1558	NR_147212	105372556		NR_147212	ENSG00000225127	LINC00237	NCRNA00237	long intergenic non-protein coding RNA 237	ncRNA
142662	chr20	5863201	5863600	+	0	NA	exon (NM_001303478, exon 4 of 4)	exon (NM_001303478, exon 4 of 4)	-48110	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
143304	chr20	25312551	25312850	+	0	NA	intron (NM_001042472, intron 6 of 12)	SVA_C|Retroposon|SVA	64615	NM_002862	5834		NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding
20851	chr1	201882701	201882900	+	0	NA	3' UTR (NM_018085, exon 24 of 24)	3' UTR (NM_018085, exon 24 of 24)	-5869	NR_030775	149345		NM_198149	ENSG00000198892	SHISA4	C1orf40|TMEM58	shisa family member 4	protein-coding
106056	chr18	9089671	9090200	+	0	NA	Intergenic	AluY|SINE|Alu	-12764	NM_021074	4729		NM_021074	ENSG00000178127	NDUFV2	CI-24k|MC1DN7	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding
218871	chr8	60526751	60526850	+	0	NA	intron (NM_001242644, intron 1 of 6)	AluSz|SINE|Alu	9813	NM_002865	5862		NM_002865	ENSG00000104388	RAB2A	LHX|RAB2	RAB2A, member RAS oncogene family	protein-coding
37648	chr11	22634971	22635330	+	0	NA	Intergenic	L1PBa|LINE|L1	-9327	NM_022725	2188		NM_022725	ENSG00000183161	FANCF	FAF	FA complementation group F	protein-coding
68733	chr14	90842801	90843300	+	0	NA	Intergenic	Intergenic	-26620	NM_001010854	145567		NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding
22744	chr1	224353601	224354200	+	0	NA	Intergenic	L2a|LINE|L2	-2979	NR_102347	29097		NM_014184	ENSG00000143771	CNIH4	CNIH-4|CNIH2|HSPC163	cornichon family member 4	protein-coding
12637	chr1	109212221	109212700	+	0	NA	Intergenic	MER21C|LTR|ERVL	-1433	NM_001330669	6301		NM_006513	ENSG00000031698	SARS1	NEDMAS|SARS|SERRS|SERS	seryl-tRNA synthetase 1	protein-coding
18988	chr1	169336101	169336500	+	0	NA	intron (NR_104229, intron 1 of 12)	LTR12C|LTR|ERV1	31497	NM_013330	29922		NM_013330	ENSG00000143156	NME7	CFAP67|MN23H7|NDK 7|NDK7|nm23-H7	NME/NM23 family member 7	protein-coding
203896	chr7	1492851	1493300	+	0	NA	exon (NM_001080453, exon 16 of 48)	exon (NM_001080453, exon 16 of 48)	11314	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
10270	chr1	64663851	64663950	+	0	NA	intron (NM_001293274, intron 13 of 25)	intron (NM_001293274, intron 13 of 25)	-81073	NM_001366165	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
107320	chr18	45139551	45139730	+	0	NA	Intergenic	L1MA5A|LINE|L1	-28323	NM_001371319	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
189988	chr5	177457551	177458200	+	0	NA	intron (NM_004395, intron 12 of 13)	intron (NM_004395, intron 12 of 13)	4551	NM_001364152	1627		NM_004395	ENSG00000113758	DBN1	D0S117E	drebrin 1	protein-coding
14809	chr1	146278351	146278730	+	0	NA	Intergenic	AmnSINE1|SINE|5S-Deu-L2	-19233	NR_104005	170688		NR_104005		NUDT4P2	-	nudix hydrolase 4 pseudogene 2	pseudo
52150	chr12	54259301	54260250	+	0	NA	promoter-TSS (NM_001127321)	promoter-TSS (NM_001127321)	-189	NM_001127321	23468		NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A|HP1alpha	chromobox 5	protein-coding
153030	chr22	23242701	23244230	+	0	NA	intron (NM_021574, intron 1 of 21)	MER21C|LTR|ERVL	-19302	NR_033408	26226		NM_012165	ENSG00000230701	FBXW4P1	FBW3|FBXW3|SHFM3P1	F-box and WD repeat domain containing 4 pseudogene 1	pseudo
233108	chr9	137126521	137126930	+	0	NA	Intergenic	L1MB4|LINE|L1	-11992	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
61930	chr13	78595901	78596730	+	0	NA	non-coding (NR_158457, exon 1 of 1)	non-coding (NR_158457, exon 1 of 1)	193	NR_158457	780529		NR_158457	ENSG00000271776	LOC780529	-	uncharacterized LOC780529	ncRNA
20158	chr1	192703251	192703830	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-12788	NR_039624	100616345		NR_039624	ENSG00000283795	MIR4426	-	microRNA 4426	ncRNA
183260	chr5	76431571	76431830	+	0	NA	intron (NM_006633, intron 1 of 35)	AluSc|SINE|Alu	28415	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
46962	chr11	134656321	134657430	+	0	NA	Intergenic	Intergenic	-79070	NR_147836	729305		NR_147836	ENSG00000251226	LINC02714	-	long intergenic non-protein coding RNA 2714	ncRNA
229606	chr9	123835171	123835330	+	0	NA	intron (NR_148208, intron 2 of 20)	intron (NR_148208, intron 2 of 20)	94876	NM_001352968	57706		NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding
232746	chr9	136656721	136657580	+	0	NA	intron (NR_135132, intron 1 of 1)	intron (NR_135132, intron 1 of 1)	-1706	NR_046367	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
186126	chr5	134147571	134148630	+	0	NA	TTS (NM_170679)	TTS (NM_170679)	24482	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
2456	chr1	9641471	9641830	+	0	NA	Intergenic	Intergenic	-10081	NM_005026	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
163721	chr3	52302801	52303000	+	0	NA	Intergenic	Intergenic	-8592	NR_029677	406925		NR_029677	ENSG00000207926	MIR135A1	MIRN135-1|MIRN135A1|mir-135a-1	microRNA 135a-1	ncRNA
129100	chr2	65124321	65124580	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSx|SINE|Alu	5656	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
199207	chr6	111791271	111791700	+	0	NA	intron (NM_002037, intron 2 of 13)	MLT1C|LTR|ERVL-MaLR	-31568	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
39186	chr11	57461951	57462650	+	0	NA	intron (NM_178570, intron 1 of 2)	intron (NM_178570, intron 1 of 2)	1772	NM_178570	349667		NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor like 2	protein-coding
35077	chr11	616901	617300	+	0	NA	3' UTR (NM_021924, exon 15 of 15).2	3' UTR (NM_021924, exon 15 of 15).2	-1150	NM_004029	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
65315	chr14	50097821	50098080	+	0	NA	intron (NR_131171, intron 1 of 8)	AluSx|SINE|Alu	7093	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
169011	chr3	152439551	152439930	+	0	NA	intron (NM_207296, intron 4 of 8)	AluJb|SINE|Alu	-98750	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
5712	chr1	26388821	26389080	+	0	NA	Intergenic	Intergenic	-16156	NM_001307925	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
105905	chr18	3403021	3403280	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-8859	NM_174886	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
133439	chr2	119366001	119367930	+	0	NA	promoter-TSS (NM_001079862)	promoter-TSS (NM_001079862)	-12	NM_001282636	1622		NM_020548	ENSG00000155368	DBI	ACBD1|ACBP|CCK-RP|EP	diazepam binding inhibitor, acyl-CoA binding protein	protein-coding
115882	chr19	16573851	16574900	+	0	NA	TTS (NM_004831)	TTS (NM_004831)	-1960	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
203437	chr7	355671	356180	+	0	NA	Intergenic	(ATCACC)n|Simple_repeat|Simple_repeat	-23500	NR_033960	442497		NR_033960	ENSG00000249574	LOC442497	-	uncharacterized LOC442497	ncRNA
159749	chr3	16258821	16259080	+	0	NA	3' UTR (NM_001047434, exon 2 of 2)	3' UTR (NM_001047434, exon 2 of 2)	5993	NM_001047434	285381		NM_206831	ENSG00000154813	DPH3	DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2	diphthamide biosynthesis 3	protein-coding
229956	chr9	126693071	126693630	+	0	NA	intron (NM_001174147, intron 4 of 7)	intron (NM_001174147, intron 4 of 7)	79422	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
56646	chr12	119444571	119444730	+	0	NA	intron (NM_178499, intron 2 of 13)	intron (NM_178499, intron 2 of 13)	109921	NM_178499	160777		NM_178499	ENSG00000183273	CCDC60	-	coiled-coil domain containing 60	protein-coding
131525	chr2	96561471	96561830	+	0	NA	Intergenic	Intergenic	23771	NM_001319092	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
11120	chr1	86419321	86419750	+	0	NA	Intergenic	Intergenic	-4636	NM_006536	9635		NM_006536	ENSG00000137975	CLCA2	CACC|CACC3|CLCRG2|CaCC-3	chloride channel accessory 2	protein-coding
113122	chr19	8305671	8305830	+	0	NA	intron (NM_016579, intron 1 of 4)	MIR|SINE|MIR	2608	NM_016579	51293		NM_016579	ENSG00000167775	CD320	8D6|8D6A|TCBLR|TCII-R|TCN2R|sCD320	CD320 molecule	protein-coding
86994	chr16	68231001	68231500	+	0	NA	exon (NM_024939, exon 12 of 15)	exon (NM_024939, exon 12 of 15)	2249	NR_106831	102466194		NR_106831	ENSG00000284259	MIR6773	hsa-mir-6773	microRNA 6773	ncRNA
105655	chr18	2573371	2573530	+	0	NA	intron (NM_006101, intron 2 of 16)	intron (NM_006101, intron 2 of 16)	1893	NM_006101	10403		NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80 kinetochore complex component	protein-coding
50577	chr12	48296551	48297230	+	0	NA	Intergenic	Intergenic	-32090	NM_181788	341567		NM_181788	ENSG00000187166	H1-7	H1.7|H1FNT|H1T2	H1.7 linker histone	protein-coding
156279	chr22	40455521	40455780	+	0	NA	intron (NM_001282661, intron 4 of 13)	AluY|SINE|Alu	7790	NM_001282660	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
83247	chr16	23879551	23879650	+	0	NA	intron (NM_212535, intron 2 of 16)	AluSz|SINE|Alu	43617	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
191921	chr6	15492351	15492450	+	0	NA	intron (NM_001267040, intron 6 of 17)	intron (NM_001267040, intron 6 of 17)	170628	NR_036448	84062		NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding
153217	chr22	23916071	23916230	+	0	NA	intron (NR_003082, intron 4 of 4)	PRIMA41-int|LTR|ERV1	-17220	NR_038911	284889		NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA
113297	chr19	8559301	8559500	+	0	NA	intron (NM_012335, intron 1 of 27)	intron (NM_012335, intron 1 of 27)	18042	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
44194	chr11	96267421	96269050	+	0	NA	intron (NM_032427, intron 1 of 4)	AluJr4|SINE|Alu	-73203	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA
62174	chr13	97359351	97359770	+	0	NA	intron (NM_001382653, intron 8 of 8)	intron (NM_001382653, intron 8 of 8)	-74609	NM_021033	5911		NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
48630	chr12	10386751	10387880	+	0	NA	intron (NM_001199805, intron 7 of 12)	MIRc|SINE|MIR	2726	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
90392	chr17	1290771	1290930	+	0	NA	intron (NM_172367, intron 1 of 2)	THE1C|LTR|ERVL-MaLR	11188	NM_172367	286753		NM_172367	ENSG00000184811	TRARG1	BEC-1|DSPB1|IFITMD3|LOST1|TUSC5	trafficking regulator of GLUT4 (SLC2A4) 1	protein-coding
195664	chr6	38051951	38052050	+	0	NA	intron (NM_021943, intron 2 of 5)	intron (NM_021943, intron 2 of 5)	232273	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
126665	chr2	29017671	29017830	+	0	NA	intron (NM_001321538, intron 9 of 18)	intron (NM_001321538, intron 9 of 18)	36452	NM_001321538	165186		NM_199280	ENSG00000189350	TOGARAM2	FAM179A	TOG array regulator of axonemal microtubules 2	protein-coding
30291	chr10	75223951	75224480	+	0	NA	intron (NM_003375, intron 9 of 10)	MER21B|LTR|ERVL	11742	NM_144589	118881		NM_144589	ENSG00000165644	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
201849	chr6	150208671	150208830	+	0	NA	intron (NM_030949, intron 1 of 3)	Charlie29a|DNA|hAT-Charlie	65706	NM_030949	81706		NM_030949	ENSG00000198729	PPP1R14C	CPI17-like|KEPI|NY-BR-81	protein phosphatase 1 regulatory inhibitor subunit 14C	protein-coding
131847	chr2	98684621	98685250	+	0	NA	intron (NM_012214, intron 2 of 15)	intron (NM_012214, intron 2 of 15)	-21462	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
76849	chr15	77821401	77821650	+	0	NA	promoter-TSS (NM_001301186)	promoter-TSS (NM_001301186)	-625	NM_001301186	84894		NM_032808	ENSG00000169783	LINGO1	LERN1|LRRN6A|MRT64|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
40679	chr11	64762901	64763800	+	0	NA	Intergenic	Intergenic	-2635	NM_001164716	5837		NM_005609	ENSG00000068976	PYGM	GSD5	glycogen phosphorylase, muscle associated	protein-coding
189549	chr5	174171651	174171950	+	0	NA	Intergenic	Intergenic	126094	NM_015980	51617		NM_015980	ENSG00000170091	NSG2	CALY3|HMP19	neuronal vesicle trafficking associated 2	protein-coding
64051	chr14	22538771	22539280	+	0	NA	Intergenic	Intergenic	18037	NR_146543	105370400		NR_146543	ENSG00000259054	LINC02332	-	long intergenic non-protein coding RNA 2332	ncRNA
98684	chr17	47877701	47878100	+	0	NA	Intergenic	(CTCC)n|Simple_repeat|Simple_repeat	17916	NR_135480	102724532		NR_135480	ENSG00000264920	SP2-DT	-	SP2 divergent transcript	ncRNA
84162	chr16	29789901	29791930	+	0	NA	promoter-TSS (NM_001256270)	promoter-TSS (NM_001256270)	-53	NM_001256270	3835		NM_007317	ENSG00000079616	KIF22	A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2	kinesin family member 22	protein-coding
57708	chr12	122864251	122864350	+	0	NA	Intergenic	Intergenic	28843	NM_003959	9026		NM_003959	ENSG00000130787	HIP1R	HIP12|HIP3|ILWEQ	huntingtin interacting protein 1 related	protein-coding
38057	chr11	35174901	35175380	+	0	NA	intron (NM_001202557, intron 1 of 8)	L2a|LINE|L2	12190	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
82939	chr16	21846071	21846730	+	0	NA	intron (NM_001310148, intron 3 of 7)	intron (NM_001310148, intron 3 of 7)	11257	NM_001135865	100132247		NM_001135865	ENSG00000243716	NPIPB5	-	nuclear pore complex interacting protein family member B5	protein-coding
111026	chr19	3064201	3064550	+	0	NA	intron (NR_031672, intron 1 of 2).3	intron (NR_031672, intron 1 of 2).3	339	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
36706	chr11	8913901	8915100	+	0	NA	intron (NR_045417, intron 2 of 4)	intron (NR_045417, intron 2 of 4)	3311	NM_020642	56672		NM_020642	ENSG00000166452	AKIP1	BCA3|C11orf17	A-kinase interacting protein 1	protein-coding
26617	chr10	22338101	22338580	+	0	NA	Intergenic	Intergenic	-7105	NM_001253855	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
176761	chr4	102344001	102344900	+	0	NA	exon (NM_001135146, exon 2 of 9)	exon (NM_001135146, exon 2 of 9)	741	NM_022154	64116		NM_022154	ENSG00000138821	SLC39A8	BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8	solute carrier family 39 member 8	protein-coding
71790	chr15	21714701	21715100	+	0	NA	Intergenic	Intergenic	3407	NR_135694	388077		NR_135694		IGHV1OR15-1	IGHV1/OR15-1|IGHV1OR151	immunoglobulin heavy variable 1/OR15-1 (non-functional)	pseudo
43940	chr11	93528921	93529180	+	0	NA	intron (NM_020179, intron 1 of 2)	intron (NM_020179, intron 1 of 2)	14341	NM_020179	56935		NM_020179	ENSG00000166002	SMCO4	C11orf75|FN5	single-pass membrane protein with coiled-coil domains 4	protein-coding
125066	chr2	9627401	9628680	+	0	NA	intron (NM_006826, intron 2 of 5)	L2a|LINE|L2	2957	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
116854	chr19	18607321	18607900	+	0	NA	promoter-TSS (NM_004750)	promoter-TSS (NM_004750)	-811	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
55062	chr12	96484051	96484350	+	0	NA	Intergenic	LTR1A2|LTR|ERV1	-5377	NM_001306084	144535		NM_198520	ENSG00000188596	CFAP54	C12orf55|C12orf63	cilia and flagella associated protein 54	protein-coding
126801	chr2	30366151	30366650	+	0	NA	Intergenic	Intergenic	19754	NR_122048	285043		NR_122048		LINC01936	-	long intergenic non-protein coding RNA 1936	ncRNA
13013	chr1	111192051	111192550	+	0	NA	exon (NM_024901, exon 8 of 12)	exon (NM_024901, exon 8 of 12)	8346	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
223225	chr8	143604301	143604950	+	0	NA	non-coding (NR_138144, exon 7 of 7).2	non-coding (NR_138144, exon 7 of 7).2	4950	NM_001329866	65263		NM_023078	ENSG00000104524	PYCR3	PYCRL	pyrroline-5-carboxylate reductase 3	protein-coding
85422	chr16	50329551	50330050	+	0	NA	intron (NM_013263, intron 8 of 16)	ERVL47-int|LTR|ERVL	37184	NR_106829	102465462		NR_106829	ENSG00000274969	MIR6771	hsa-mir-6771	microRNA 6771	ncRNA
21830	chr1	207338651	207339150	+	0	NA	intron (NM_001300904, intron 8 of 10)	intron (NM_001300904, intron 8 of 10)	17222	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
135151	chr2	157470371	157470630	+	0	NA	Intergenic	Intergenic	-26411	NM_004288	9595		NM_004288	ENSG00000115165	CYTIP	B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP	cytohesin 1 interacting protein	protein-coding
107577	chr18	48840171	48840330	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	102557	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
174943	chr4	49136551	49136650	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	149958	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
165583	chr3	101576501	101577380	+	0	NA	intron (NR_135229, intron 2 of 4)	intron (NR_135229, intron 2 of 4)	2760	NM_020357	57092		NM_020357	ENSG00000081154	PCNP	-	PEST proteolytic signal containing nuclear protein	protein-coding
237579	chrX	123731501	123731960	+	0	NA	intron (NM_001081550, intron 1 of 38)	intron (NM_001081550, intron 1 of 38)	1322	NM_001081550	57187		NM_020449	ENSG00000125676	THOC2	CXorf3|MRX12|MRX35|THO2|XLID12|dJ506G2.1|hTREX120	THO complex subunit 2	protein-coding
78993	chr15	101780551	101780650	+	0	NA	Intergenic	Intergenic	-25120	NM_001005326	390648		NM_001005326	ENSG00000184140	OR4F6	OR15-15|OR4F12	olfactory receptor family 4 subfamily F member 6	protein-coding
168508	chr3	143831171	143831650	+	0	NA	intron (NM_173653, intron 2 of 15)	intron (NM_173653, intron 2 of 15)	17058	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
71765	chr15	21112671	21112830	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	109473	NR_145444	654499		NR_145444		FAM30C	HsT16041|KIAA0125P2	family with sequence similarity 30 member C	ncRNA
147859	chr20	62813771	62814730	+	0	NA	TTS (NM_007346)	TTS (NM_007346)	-2800	NM_001853	1299		NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED|STL6	collagen type IX alpha 3 chain	protein-coding
20396	chr1	198175671	198176680	+	0	NA	intron (NM_133494, intron 1 of 9)	L2c|LINE|L2	19177	NM_133494	140609		NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding
33155	chr10	112475671	112475850	+	0	NA	intron (NM_001365710, intron 3 of 7)	intron (NM_001365710, intron 3 of 7)	-28157	NM_001351082	64429		NM_022494	ENSG00000023041	ZDHHC6	DHHC-6|DHHC6|ZNF376	zinc finger DHHC-type palmitoyltransferase 6	protein-coding
82288	chr16	15589321	15589600	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	21635	NR_106761	102465252		NR_106761	ENSG00000284184	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA
57342	chr12	121750321	121751800	+	0	NA	intron (NM_001080825, intron 4 of 11)	(CCCACAC)n|Simple_repeat|Simple_repeat	38308	NM_001080825	144404		NM_001080825	ENSG00000188735	TMEM120B	-	transmembrane protein 120B	protein-coding
213094	chr7	131112371	131112850	+	0	NA	intron (NM_001145354, intron 1 of 18)	AluJo|SINE|Alu	2516	NM_001145354	4289		NM_013255	ENSG00000128585	MKLN1	TWA2	muskelin 1	protein-coding
78822	chr15	99704331	99704830	+	0	NA	intron (NM_001130927, intron 7 of 9)	intron (NM_001130927, intron 7 of 9)	28857	NM_001284417	145748		NM_152449	ENSG00000183060	LYSMD4	-	LysM domain containing 4	protein-coding
203868	chr7	1468851	1469630	+	0	NA	Intergenic	Intergenic	-9770	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
176490	chr4	90315021	90315350	+	0	NA	intron (NM_207491, intron 3 of 7)	intron (NM_207491, intron 3 of 7)	80154	NM_207491	401145		NM_207491	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine rich protein 1	protein-coding
114645	chr19	13014171	13014730	+	0	NA	intron (NM_001365902, intron 1 of 10)	intron (NM_001365902, intron 1 of 10)	-9522	NM_001271044	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
69339	chr14	93953071	93953750	+	0	NA	exon (NM_001202429, exon 5 of 10)	exon (NM_001202429, exon 5 of 10)	3637	NM_016150	51676		NM_016150	ENSG00000100628	ASB2	ASB-2	ankyrin repeat and SOCS box containing 2	protein-coding
60951	chr13	46551321	46551930	+	0	NA	Intergenic	Intergenic	-1545	NM_015116	23143		NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding
195763	chr6	40436551	40437250	+	0	NA	intron (NM_020737, intron 1 of 2)	MamGypsy2-I|LTR|Gypsy	58563	NR_160959	732253		NM_001359094	ENSG00000204091	TDRG1	LINC00532|lincRNA-NR_024015	testis development related 1	ncRNA
30562	chr10	79779351	79779830	+	0	NA	intron (NR_120613, intron 5 of 6)	intron (NR_120613, intron 5 of 6)	-46312	NR_029407	642361		NR_029407	ENSG00000272447	LOC642361	-	uncharacterized LOC642361	ncRNA
126307	chr2	27262101	27262300	+	0	NA	intron (NM_001318950, intron 2 of 8)	CpG	847	NM_003459	7781		NM_003459	ENSG00000115194	SLC30A3	ZNT3	solute carrier family 30 member 3	protein-coding
96956	chr17	42193101	42193300	+	0	NA	intron (NM_032484, intron 3 of 9)	intron (NM_032484, intron 3 of 9)	1294	NM_001142623	84514		NM_032484	ENSG00000167925	GHDC	D11LGP1|LGP1	GH3 domain containing	protein-coding
39208	chr11	57516701	57516900	+	0	NA	Intergenic	AluJb|SINE|Alu	-1098	NM_003627	8501		NM_003627	ENSG00000149150	SLC43A1	LAT3|PB39|POV1|R00504	solute carrier family 43 member 1	protein-coding
69137	chr14	92544951	92545450	+	0	NA	intron (NM_024832, intron 1 of 9)	AluY|SINE|Alu	-31034	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
64826	chr14	35084171	35084330	+	0	NA	TTS (NM_001289022)	TTS (NM_001289022)	3169	NR_110415	101927178		NR_110415	ENSG00000151327	LOC101927178	-	uncharacterized LOC101927178	ncRNA
166869	chr3	123582901	123583480	+	0	NA	intron (NM_001329784, intron 1 of 8)	intron (NM_001329784, intron 1 of 8)	1427	NM_001329787	201562		NM_198402	ENSG00000206527	HACD2	PTPLB	3-hydroxyacyl-CoA dehydratase 2	protein-coding
225619	chr9	36215021	36215280	+	0	NA	3' UTR (NM_001190388, exon 11 of 11)	3' UTR (NM_001190388, exon 11 of 11)	24229	NM_001311206	1211		NM_001833	ENSG00000122705	CLTA	LCA	clathrin light chain A	protein-coding
218520	chr8	53712551	53712650	+	0	NA	Intergenic	Intergenic	130442	NM_213620	51606		NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding
122022	chr19	48615671	48615830	+	0	NA	promoter-TSS (NM_017708)	promoter-TSS (NM_017708)	-674	NM_017708	54854		NM_017708	ENSG00000105523	FAM83E	-	family with sequence similarity 83 member E	protein-coding
108021	chr18	58768351	58768790	+	0	NA	Intergenic	CpG	-45310	NR_146904	105372147		NR_146904	ENSG00000267593	LINC01926	-	long intergenic non-protein coding RNA 1926	ncRNA
9250	chr1	46184771	46184930	+	0	NA	exon (NM_005727, exon 6 of 9)	exon (NM_005727, exon 6 of 9)	-8362	NM_001303427	110117499		NM_001303427	ENSG00000278139	P3R3URF-PIK3R3	LOC110117498-PIK3R3	P3R3URF-PIK3R3 readthrough	protein-coding
15568	chr1	150558121	150558700	+	0	NA	intron (NM_001288608, intron 15 of 19)	intron (NM_001288608, intron 15 of 19)	6481	NR_036211	100422997		NR_036211	ENSG00000264553	MIR4257	-	microRNA 4257	ncRNA
211074	chr7	102475721	102475980	+	0	NA	intron (NM_001371100, intron 1 of 2)	AluSq2|SINE|Alu	3072	NM_001371100	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
40861	chr11	65085701	65086080	+	0	NA	intron (NM_006782, intron 3 of 7)	intron (NM_006782, intron 3 of 7)	1668	NM_006782	7542		NM_006782	ENSG00000162300	ZFPL1	D11S750|MCG4	zinc finger protein like 1	protein-coding
99978	chr17	57603471	57604550	+	0	NA	intron (NR_110807, intron 2 of 2)	intron (NR_110807, intron 2 of 2)	4402	NR_110807	101927539		NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA
158853	chr3	9819671	9820030	+	0	NA	intron (NM_001366051, intron 6 of 12)	intron (NM_001366051, intron 6 of 12)	9588	NR_037162	26140		NM_015644	ENSG00000214021	TTLL3	HOTTL	tubulin tyrosine ligase like 3	protein-coding
164188	chr3	56816871	56817030	+	0	NA	intron (NM_001289698, intron 2 of 10)	intron (NM_001289698, intron 2 of 10)	-15001	NM_001377414	50650		NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
159776	chr3	16309301	16310350	+	0	NA	intron (NM_001352982, intron 10 of 10)	MIR3|SINE|MIR	44613	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
75037	chr15	64147971	64148530	+	0	NA	Intergenic	Intergenic	-3481	NR_073534	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
34605	chr10	133268921	133269530	+	0	NA	intron (NM_001164490, intron 16 of 19)	intron (NM_001164490, intron 16 of 19)	7643	NM_001164489	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
239302	chrY	15440701	15441280	+	0	NA	Intergenic	Intergenic	-636957	NR_046504	100874056		NR_046504	ENSG00000228787	NLGN4Y-AS1	NLGN4Y-AS|NLGN4YAS	NLGN4Y antisense RNA 1	ncRNA
65233	chr14	49863801	49864630	+	0	NA	Intergenic	Intergenic	-1366	NR_027260	378706		NR_027260	ENSG00000274012	RN7SL2	7L1C|7L30.1|7SL1c|RNSRP2	RNA component of signal recognition particle 7SL2	scRNA
53383	chr12	64686451	64687050	+	0	NA	intron (NR_040718, intron 2 of 3)	AluJb|SINE|Alu	-64145	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
40168	chr11	62887051	62887850	+	0	NA	intron (NM_001012662, intron 10 of 11)	AluSx|SINE|Alu	5751	NR_037193	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
102777	chr17	76298601	76299600	+	0	NA	intron (NM_032134, intron 3 of 18)	intron (NM_032134, intron 3 of 18)	8580	NR_130649	84074		NM_032134	ENSG00000129646	QRICH2	SPGF35	glutamine rich 2	protein-coding
232779	chr9	136691071	136691900	+	0	NA	Intergenic	Intergenic	-4028	NM_006412	10555		NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta|LPLAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding
217045	chr8	23269101	23269300	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-18892	NR_125897	203069		NM_001136108	ENSG00000104679	R3HCC1	-	R3H domain and coiled-coil containing 1	protein-coding
40400	chr11	64040571	64040930	+	0	NA	intron (NM_001384466, intron 1 of 2)	intron (NM_001384466, intron 1 of 2)	4068	NM_001384466	23769		NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding
11731	chr1	91889971	91890800	+	0	NA	intron (NM_001195684, intron 2 of 17)	intron (NM_001195684, intron 2 of 17)	-4234	NM_003243	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
15739	chr1	151073101	151073300	+	0	NA	intron (NM_001323912, intron 2 of 7)	AluJr|SINE|Alu	2439	NM_001323912	126626		NM_144618	ENSG00000143458	GABPB2	GABPB-2	GA binding protein transcription factor subunit beta 2	protein-coding
115750	chr19	16317621	16317880	+	0	NA	Intergenic	AluSz|SINE|Alu	-7076	NM_016270	10365		NM_006075	ENSG00000127528	KLF2	LKLF	KLF transcription factor 2	protein-coding
26952	chr10	26551151	26551250	+	0	NA	intron (NM_019043, intron 11 of 14)	L1MA6|LINE|L1	28107	NR_134472	101929117		NR_134472		LINC03028	-	long intergenic non-protein coding RNA 3028	ncRNA
4455	chr1	21335921	21336430	+	0	NA	intron (NM_001113348, intron 1 of 18)	AluJr|SINE|Alu	9329	NM_001113348	1889		NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding
2110	chr1	8120971	8121330	+	0	NA	Intergenic	Intergenic	-87522	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
19927	chr1	184484601	184484800	+	0	NA	intron (NM_030806, intron 2 of 5)	LTR86A2|LTR|ERVL	97671	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
144802	chr20	36666401	36666630	+	0	NA	intron (NR_038370, intron 7 of 13)	intron (NR_038370, intron 7 of 13)	-20319	NM_032214	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
213406	chr7	137846151	137847430	+	0	NA	promoter-TSS (NM_004717)	promoter-TSS (NM_004717)	50	NM_001321710	9162		NM_004717	ENSG00000157680	DGKI	DGK-IOTA	diacylglycerol kinase iota	protein-coding
188151	chr5	150414521	150414980	+	0	NA	Intergenic	MER21C|LTR|ERVL	-1814	NM_001025159	972		NM_004355	ENSG00000019582	CD74	CLIP|DHLAG|HLADG|II|Ia-GAMMA|p33	CD74 molecule	protein-coding
75814	chr15	69298771	69299230	+	0	NA	promoter-TSS (NM_017705)	promoter-TSS (NM_017705)	88	NM_017705	54852		NM_017705	ENSG00000137819	PAQR5	MPRG	progestin and adipoQ receptor family member 5	protein-coding
162394	chr3	48185721	48186180	+	0	NA	intron (NM_001789, intron 2 of 14)	intron (NM_001789, intron 2 of 14)	2467	NM_001789	993		NM_001789	ENSG00000164045	CDC25A	CDC25A2	cell division cycle 25A	protein-coding
99741	chr17	50927351	50927450	+	0	NA	Intergenic	Intergenic	-59422	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
222929	chr8	143012271	143012530	+	0	NA	intron (NR_026913, intron 1 of 1)	HERV35I-int|LTR|ERV1	5990	NR_026913	100133669		NR_026913		LY6E-DT	-	LY6E divergent transcript	ncRNA
124218	chr19	57192971	57193550	+	0	NA	intron (NM_003417, intron 1 of 3)	intron (NM_003417, intron 1 of 3)	1760	NM_003417	9422		NM_003417	ENSG00000083844	ZNF264	-	zinc finger protein 264	protein-coding
73522	chr15	43796101	43797500	+	0	NA	TTS (NM_001018108)	TTS (NM_001018108)	-3041	NR_031695	100302254		NR_031695	ENSG00000221792	MIR1282	MIRN1282|hsa-mir-1282	microRNA 1282	ncRNA
60248	chr13	40581471	40582030	+	0	NA	intron (NM_002015, intron 1 of 2)	L1ME3Cz|LINE|L1	84891	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
88414	chr16	84686771	84687300	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-12965	NR_073577	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
180960	chr5	35672801	35673480	+	0	NA	intron (NM_024867, intron 10 of 36)	intron (NM_024867, intron 10 of 36)	55277	NM_144722	79925		NM_024867	ENSG00000152582	SPEF2	CT122|KPL2|SPGF43	sperm flagellar 2	protein-coding
225787	chr9	37484401	37484600	+	0	NA	Intergenic	AluJb|SINE|Alu	-1435	NM_001282766	64425		NM_022490	ENSG00000137054	POLR1E	A49|PAF53|PRAF1|RPA49	RNA polymerase I subunit E	protein-coding
119328	chr19	39941331	39942580	+	0	NA	Intergenic	Intergenic	-7329	NM_003890	8857		NM_003890	ENSG00000275395	FCGBP	FC(GAMMA)BP	Fc gamma binding protein	protein-coding
59403	chr13	25232771	25233200	+	0	NA	Intergenic	Intergenic	51653	NR_120427	102723318		NR_120427	ENSG00000238169	LINC01053	-	long intergenic non-protein coding RNA 1053	ncRNA
111277	chr19	3550651	3550950	+	0	NA	intron (NM_174983, intron 2 of 9)	AluJb|SINE|Alu	6784	NM_001287529	126321		NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501|SLC59B1	major facilitator superfamily domain containing 12	protein-coding
131341	chr2	96154001	96154500	+	0	NA	Intergenic	Intergenic	-8810	NM_004418	1844		NM_004418	ENSG00000158050	DUSP2	PAC-1|PAC1	dual specificity phosphatase 2	protein-coding
198842	chr6	109349671	109349830	+	0	NA	intron (NR_152435, intron 44 of 45)	intron (NR_152435, intron 44 of 45)	31989	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
226231	chr9	66244771	66245230	+	0	NA	Intergenic	Intergenic	-80094	NR_027472	642929		NR_027472		LOC642929	-	general transcription factor II, i pseudogene	pseudo
169884	chr3	177483271	177483430	+	0	NA	intron (NR_047568, intron 1 of 3)	intron (NR_047568, intron 1 of 3)	41429	NR_047568	100505566		NR_047568	ENSG00000228221	LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
4181	chr1	19428751	19429050	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	55395	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
139653	chr2	226799301	226800230	+	0	NA	promoter-TSS (NM_001349069)	promoter-TSS (NM_001349069)	55	NM_005544	3667		NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding
173829	chr4	18689451	18689630	+	0	NA	Intergenic	Intergenic	-667665	NR_158568	254251		NM_153686	ENSG00000178177	LCORL	MLR1	ligand dependent nuclear receptor corepressor like	protein-coding
92583	chr17	9236621	9237280	+	0	NA	intron (NM_004822, intron 6 of 6)	intron (NM_004822, intron 6 of 6)	-57832	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
56428	chr12	113358121	113359450	+	0	NA	exon (NM_001159727, exon 1 of 11)	exon (NM_001159727, exon 1 of 11)	198	NM_173542	196463		NM_173542	ENSG00000151176	PLBD2	P76	phospholipase B domain containing 2	protein-coding
47444	chr12	3726451	3726850	+	0	NA	intron (NM_032680, intron 2 of 10)	intron (NM_032680, intron 2 of 10)	26459	NM_032680	84766		NM_032680	ENSG00000130038	CRACR2A	EFCAB4B|RAB46	calcium release activated channel regulator 2A	protein-coding
19674	chr1	180912521	180912980	+	0	NA	promoter-TSS (NM_020950)	promoter-TSS (NM_020950)	-147	NM_020950	57710		NM_020950	ENSG00000135835	KIAA1614	-	KIAA1614	protein-coding
54745	chr12	93784201	93784800	+	0	NA	intron (NM_001320100, intron 2 of 2)	MIR|SINE|MIR	-46677	NR_110093	101928731		NR_110092	ENSG00000258274	CRADD-AS1	-	CRADD antisense RNA 1	ncRNA
86068	chr16	57601551	57602600	+	0	NA	Intergenic	L1ME2|LINE|L1	-17663	NM_001290143	9289		NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|CDCBM14B|CDCBM15A|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
222194	chr8	133043371	133044300	+	0	NA	intron (NM_001282964, intron 5 of 6)	intron (NM_001282964, intron 5 of 6)	2746	NR_107002	102466865		NR_107002	ENSG00000276961	MIR7848	hsa-mir-7848	microRNA 7848	ncRNA
89629	chr16	89322221	89322880	+	0	NA	intron (NR_168302, intron 1 of 3)	intron (NR_168302, intron 1 of 3)	2098	NR_168302	100287036		NM_001242885		LOC100287036	-	uncharacterized LOC100287036	ncRNA
19715	chr1	181096171	181097130	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	7950	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
142916	chr20	18195151	18195250	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	50101	NR_028402	57325		NM_020536	ENSG00000149474	KAT14	ATAC2|CRP2BP|CSRP2BP|PRO1194|dJ717M23.1	lysine acetyltransferase 14	protein-coding
237546	chrX	120485521	120486680	+	0	NA	Intergenic	Intergenic	-16751	NM_013995	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
220925	chr8	108243001	108243630	+	0	NA	intron (NM_001568, intron 1 of 12)	L1ME3A|LINE|L1	5402	NM_001568	3646		NM_001568	ENSG00000104408	EIF3E	EIF3-P48|EIF3S6|INT6|eIF3-p46	eukaryotic translation initiation factor 3 subunit E	protein-coding
94893	chr17	31549121	31550850	+	0	NA	Intergenic	CpG	-10011	NR_029710	406968		NR_029710	ENSG00000207614	MIR193A	MIRN193|MIRN193A|mir-193a	microRNA 193a	ncRNA
21728	chr1	206787571	206788000	+	0	NA	intron (NM_153758, intron 1 of 6)	intron (NM_153758, intron 1 of 6)	-15291	NR_168466	3586		NM_000572	ENSG00000136634	IL10	CSIF|GVHDS|IL-10|IL10A|TGIF	interleukin 10	protein-coding
139903	chr2	230719821	230720480	+	0	NA	intron (NM_001130849, intron 1 of 8)	intron (NM_001130849, intron 1 of 8)	6602	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
20026	chr1	185309701	185309900	+	0	NA	intron (NM_006469, intron 2 of 14)	intron (NM_006469, intron 2 of 14)	7443	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
49316	chr12	21615401	21616380	+	0	NA	Intergenic	L1M4|LINE|L1	-11043	NM_021957	2998		NM_021957	ENSG00000111713	GYS2	-	glycogen synthase 2	protein-coding
127299	chr2	38753151	38753600	+	0	NA	Intergenic	AluSp|SINE|Alu	-1881	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
146025	chr20	47187901	47188950	+	0	NA	3' UTR (NM_005244, exon 16 of 16)	3' UTR (NM_005244, exon 16 of 16)	21458	NR_037410	100500814		NR_037410	ENSG00000264901	MIR3616	mir-3616	microRNA 3616	ncRNA
105532	chr17	83125701	83126700	+	0	NA	Intergenic	Intergenic	45054	NM_001363853	284207		NM_001004431	ENSG00000176845	METRNL	-	meteorin like, glial cell differentiation regulator	protein-coding
94922	chr17	31926571	31926730	+	0	NA	Intergenic	AluYh3|SINE|Alu	-10357	NM_001321207	23512		NM_015355	ENSG00000178691	SUZ12	CHET9|IMMAS|JJAZ1	SUZ12 polycomb repressive complex 2 subunit	protein-coding
66852	chr14	64975201	64975500	+	0	NA	intron (NM_001202559, intron 3 of 13)	AluSq2|SINE|Alu	-3014	NM_001330182	376267		NM_198686	ENSG00000139998	RAB15	-	RAB15, member RAS oncogene family	protein-coding
100478	chr17	61457651	61457750	+	0	NA	intron (NM_001321120, intron 3 of 8)	CpG-11515	1212	NM_018488	9496		NM_018488	ENSG00000121075	TBX4	ICPPS|PAPPAS|SPS	T-box transcription factor 4	protein-coding
175189	chr4	56467141	56468830	+	0	NA	intron (NR_151856, intron 1 of 19)	CpG	368	NR_151856	6731		NM_006947	ENSG00000174780	SRP72	BMFF|BMFS1|HEL103	signal recognition particle 72	protein-coding
81502	chr16	8955021	8955280	+	0	NA	intron (NM_003470, intron 1 of 30)	Charlie10|DNA|hAT-Charlie	1230	NM_001321858	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
3605	chr1	16245371	16245630	+	0	NA	Intergenic	AluSz|SINE|Alu	-8317	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
5330	chr1	25246071	25248350	+	0	NA	intron (NR_135788, intron 1 of 3)	CpG	244	NR_135786	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
210147	chr7	98235621	98236080	+	0	NA	intron (NM_015395, intron 10 of 25)	AluJr|SINE|Alu	16382	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
82106	chr16	14585701	14585900	+	0	NA	intron (NM_002582, intron 14 of 23)	intron (NM_002582, intron 14 of 23)	44460	NM_001134477	5073		NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding
184356	chr5	96997221	96997500	+	0	NA	intron (NM_175920, intron 7 of 17)	intron (NM_175920, intron 7 of 17)	38927	NM_175920	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
207453	chr7	44579071	44579230	+	0	NA	TTS (NM_001303060)	TTS (NM_001303060)	3081	NM_001303062	222068		NM_182547	ENSG00000158604	TMED4	ERS25|GMP25iso|HNLF|p24a3|p24alpha3	transmembrane p24 trafficking protein 4	protein-coding
150917	chr21	44226801	44227200	+	0	NA	3' UTR (NM_001363770, exon 8 of 8)	3' UTR (NM_001363770, exon 8 of 8)	13943	NM_001283051	23308		NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|B7h|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T cell costimulator ligand	protein-coding
110997	chr19	3039501	3040380	+	0	NA	intron (NM_001144761, intron 2 of 19)	MIR|SINE|MIR	7695	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
180648	chr5	17519251	17519900	+	0	NA	Intergenic	Intergenic	-27499	NM_001371919	340096		NM_001371919	ENSG00000268799	H3Y2	H3.X|H3.Y.2	H3.Y histone 2	protein-coding
21183	chr1	203799371	203799530	+	0	NA	exon (NM_001174108, exon 1 of 1)	exon (NM_001174108, exon 1 of 1)	1927	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
189576	chr5	175507601	175508200	+	0	NA	intron (NM_001322978, intron 2 of 10)	AluJo|SINE|Alu	29340	NM_001322983	94081		NM_022754	ENSG00000164466	SFXN1	SLC56A1|TCC	sideroflexin 1	protein-coding
218377	chr8	43239471	43240100	+	0	NA	Intergenic	SAR|Satellite|Satellite	-52657	NM_001002920	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
238241	chrX	142971751	142972000	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-54053	NM_001009613	441525		NM_001009613	ENSG00000189326	SPANXN4	CT11.9	SPANX family member N4	protein-coding
104740	chr17	81671851	81672580	+	0	NA	intron (NM_199287, intron 5 of 5)	intron (NM_199287, intron 5 of 5)	5478	NM_199287	339230		NM_199287	ENSG00000185298	CCDC137	RaRF	coiled-coil domain containing 137	protein-coding
211938	chr7	112469571	112470130	+	0	NA	intron (NR_120333, intron 8 of 11)	intron (NR_120333, intron 8 of 11)	-11003	NM_001134468	286006		NM_182597	ENSG00000181016	LSMEM1	C7orf53	leucine rich single-pass membrane protein 1	protein-coding
2861	chr1	11295021	11295380	+	0	NA	3' UTR (NM_001330349, exon 3 of 3)	3' UTR (NM_001330349, exon 3 of 3)	22002	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
145626	chr20	44736321	44737080	+	0	NA	intron (NR_132377, intron 3 of 4)	intron (NR_132377, intron 3 of 4)	-9165	NM_022358	60598		NM_022358	ENSG00000124249	KCNK15	K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1	potassium two pore domain channel subfamily K member 15	protein-coding
52411	chr12	55752121	55752380	+	0	NA	TTS (NR_026722)	TTS (NR_026722)	9128	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
201876	chr6	150741871	150742030	+	0	NA	intron (NM_001329799, intron 2 of 15)	MER20|DNA|hAT-Charlie	20851	NM_001329806	57480		NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding
112641	chr19	6804071	6804680	+	0	NA	intron (NM_005428, intron 1 of 26)	MER66B|LTR|ERV1	31667	NM_005428	7409		NM_005428	ENSG00000141968	VAV1	VAV	vav guanine nucleotide exchange factor 1	protein-coding
67691	chr14	73237601	73238830	+	0	NA	intron (NM_173462, intron 1 of 25)	CpG	709	NR_158677	89932		NM_173462	ENSG00000100767	PAPLN	PPN	papilin, proteoglycan like sulfated glycoprotein	protein-coding
139754	chr2	229916301	229916500	+	0	NA	intron (NM_001348325, intron 1 of 42)	intron (NM_001348325, intron 1 of 42)	5279	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
24926	chr10	1108671	1109050	+	0	NA	intron (NM_014023, intron 11 of 13)	intron (NM_014023, intron 11 of 13)	-50908	NR_015376	399706		NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
76413	chr15	74770171	74770330	+	0	NA	Intergenic	Intergenic	-11830	NM_001127190	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
192090	chr6	16687001	16687950	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	72709	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
77216	chr15	80997001	80997200	+	0	NA	TTS (NR_039739)	TTS (NR_039739)	373	NR_039739	100616181		NR_039739	ENSG00000265855	MIR4514	-	microRNA 4514	ncRNA
149478	chr21	31898871	31899230	+	0	NA	intron (NM_014586, intron 1 of 10)	intron (NM_014586, intron 1 of 10)	26030	NM_014586	30811		NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding
87031	chr16	68273951	68274480	+	0	NA	intron (NM_001076785, intron 3 of 11)	intron (NM_001076785, intron 3 of 11)	9689	NM_001076785	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
90022	chr16	89895601	89896380	+	0	NA	exon (NM_014972, exon 9 of 18)	exon (NM_014972, exon 9 of 18)	22398	NM_014972	22980		NM_014972	ENSG00000141002	TCF25	FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049	transcription factor 25	protein-coding
166735	chr3	121745251	121745850	+	0	NA	intron (NM_001366282, intron 1 of 21)	intron (NM_001366282, intron 1 of 21)	4191	NM_001366284	2804		NM_004487	ENSG00000173230	GOLGB1	GCP|GCP372|GOLIM1	golgin B1	protein-coding
5948	chr1	26888651	26888950	+	0	NA	intron (NM_018066, intron 2 of 4)	intron (NM_018066, intron 2 of 4)	1483	NM_018066	54707		NM_018066	ENSG00000142751	GPN2	ATPBD1B	GPN-loop GTPase 2	protein-coding
37426	chr11	17350171	17350330	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1550	NM_001202439	374383		NM_001009913	ENSG00000188211	NCR3LG1	B7-H6|B7H6|DKFZp686O24166	natural killer cell cytotoxicity receptor 3 ligand 1	protein-coding
97119	chr17	42525421	42525880	+	0	NA	Intergenic	L1MB8|LINE|L1	-10591	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
122944	chr19	50717201	50717730	+	0	NA	intron (NM_016148, intron 1 of 23)	intron (NM_016148, intron 1 of 23)	2337	NM_016148	50944		NM_016148	ENSG00000161681	SHANK1	SPANK-1|SSTRIP|synamon	SH3 and multiple ankyrin repeat domains 1	protein-coding
224388	chr9	9950551	9950670	+	0	NA	intron (NM_002839, intron 4 of 45)	AluYe5|SINE|Alu	151218	NR_135135	105375972		NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
141443	chr2	241031351	241031650	+	0	NA	intron (NM_001080437, intron 2 of 31)	L2a|LINE|L2	32882	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
230775	chr9	128913601	128914400	+	0	NA	intron (NM_019594, intron 3 of 3)	AluSx|SINE|Alu	-6982	NM_174933	254295		NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding
10750	chr1	76293301	76293500	+	0	NA	intron (NM_001349108, intron 1 of 3)	intron (NM_001349108, intron 1 of 3)	218654	NM_001349107	256435		NM_152996	ENSG00000184005	ST6GALNAC3	PRO7177|SIAT7C|ST6GALNACIII|STY	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
156246	chr22	40399071	40399530	+	0	NA	intron (NM_001350047, intron 1 of 20)	intron (NM_001350047, intron 1 of 20)	28706	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
36223	chr11	3590051	3590500	+	0	NA	Intergenic	L1M5|LINE|L1	-18288	NR_126335	101927708		NR_126335	ENSG00000255367	LOC101927708	-	uncharacterized LOC101927708	ncRNA
225802	chr9	37531501	37532300	+	0	NA	intron (NM_012166, intron 4 of 10)	intron (NM_012166, intron 4 of 10)	44480	NM_012166	26267		NM_012166	ENSG00000147912	FBXO10	FBX10|PRMT11	F-box protein 10	protein-coding
49788	chr12	31928601	31929500	+	0	NA	Intergenic	MER34A|LTR|ERV1	-30365	NM_018169	55196		NM_018169	ENSG00000174718	RESF1	C12orf35|GET|KIAA1551|UTA2-1	retroelement silencing factor 1	protein-coding
172774	chr4	2930371	2931190	+	0	NA	TTS (NM_001354762)	TTS (NM_001354762)	3457	NM_001120	10227		NM_001120	ENSG00000109736	MFSD10	TETRAN|TETTRAN	major facilitator superfamily domain containing 10	protein-coding
85920	chr16	57090021	57090480	+	0	NA	Intergenic	AluJr|SINE|Alu	-2333	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
236152	chrX	63746101	63746800	+	0	NA	intron (NM_001369036, intron 1 of 10)	intron (NM_001369036, intron 1 of 10)	8673	NM_001353928	23229		NM_015185	ENSG00000131089	ARHGEF9	COLLYBISTIN|DEE8|EIEE8|HPEM-2|PEM-2|PEM2	Cdc42 guanine nucleotide exchange factor 9	protein-coding
203847	chr7	1449771	1450130	+	0	NA	intron (NM_182924, intron 2 of 16)	intron (NM_182924, intron 2 of 16)	9520	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
43442	chr11	77788751	77788930	+	0	NA	intron (NM_016578, intron 1 of 15)	L1M2|LINE|L1	31994	NM_016578	51773		NM_016578	ENSG00000048649	RSF1	HBXAP|RSF-1|XAP8|p325	remodeling and spacing factor 1	protein-coding
133849	chr2	128278421	128278680	+	0	NA	intron (NM_004807, intron 1 of 1)	intron (NM_004807, intron 1 of 1)	40318	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
119686	chr19	41016771	41017000	+	0	NA	3' UTR (NM_000767, exon 9 of 9)	3' UTR (NM_000767, exon 9 of 9)	25603	NM_000767	1555		NM_000767	ENSG00000197408	CYP2B6	CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450	cytochrome P450 family 2 subfamily B member 6	protein-coding
237742	chrX	129601221	129602050	+	0	NA	Intergenic	Intergenic	53321	NM_017413	8862		NM_017413	ENSG00000171388	APLN	APEL|XNPEP2	apelin	protein-coding
158289	chr22	50360771	50360930	+	0	NA	intron (NM_001351641, intron 1 of 23)	intron (NM_001351641, intron 1 of 23)	17523	NM_001351646	9701		NM_014678	ENSG00000100239	PPP6R2	KIAA0685|PP6R2|SAP190|SAPS2	protein phosphatase 6 regulatory subunit 2	protein-coding
22821	chr1	224929571	224929930	+	0	NA	promoter-TSS (NM_001349912)	promoter-TSS (NM_001349912)	75	NM_001367479	127602		NM_001373	ENSG00000185842	DNAH14	C1orf67|Dnahc14|HL-18|HL18	dynein axonemal heavy chain 14	protein-coding
219180	chr8	66548751	66549080	+	0	NA	Intergenic	Intergenic	55349	NM_152765	254778		NM_152765	ENSG00000169085	VXN	C8orf46	vexin	protein-coding
138401	chr2	204881751	204882080	+	0	NA	intron (NM_205863, intron 2 of 21)	intron (NM_205863, intron 2 of 21)	336440	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
129157	chr2	66434821	66435250	+	0	NA	promoter-TSS (NM_002398)	promoter-TSS (NM_002398)	-90	NM_002398	4211		NM_002398	ENSG00000143995	MEIS1	-	Meis homeobox 1	protein-coding
199250	chr6	111840971	111841230	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	31971	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
105736	chr18	2734251	2734680	+	0	NA	intron (NM_015295, intron 25 of 47)	intron (NM_015295, intron 25 of 47)	78739	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
50120	chr12	45130871	45131030	+	0	NA	Intergenic	Intergenic	-65539	NR_026583	83956		NM_032032		RACGAP1P1	FKSG42|RACGAP1P	Rac GTPase activating protein 1 pseudogene 1	pseudo
144787	chr20	36635451	36635750	+	0	NA	intron (NM_175077, intron 2 of 7)	intron (NM_175077, intron 2 of 7)	10596	NM_175077	84174		NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
81706	chr16	11248201	11248780	+	0	NA	Intergenic	AluJr|SINE|Alu	7692	NM_003745	8651		NM_003745	ENSG00000185338	SOCS1	AISIMD|CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3	suppressor of cytokine signaling 1	protein-coding
230466	chr9	128207421	128208180	+	0	NA	intron (NM_001374269, intron 1 of 21)	intron (NM_001374269, intron 1 of 21)	-3578	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
80008	chr16	1918321	1918930	+	0	NA	promoter-TSS (NM_001009606)	promoter-TSS (NM_001009606)	-210	NM_001009606	64711		NM_001009606	ENSG00000162040	HS3ST6	3-OST-6|3OST6|HAE8|HS3ST5	heparan sulfate-glucosamine 3-sulfotransferase 6	protein-coding
22128	chr1	211829951	211831350	+	0	NA	promoter-TSS (NR_135820)	promoter-TSS (NR_135820)	113	NM_001375841	9926		NM_014873	ENSG00000123684	LPGAT1	FAM34A|FAM34A1|LPLAT7|NET8	lysophosphatidylglycerol acyltransferase 1	protein-coding
151219	chr21	45229521	45229780	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4690	NR_135279	114042		NR_135279	ENSG00000182586	LINC00334	C21orf89|NCRNA00334	long intergenic non-protein coding RNA 334	ncRNA
111299	chr19	3586101	3586750	+	0	NA	intron (NM_133261, intron 1 of 5)	intron (NM_133261, intron 1 of 5)	947	NM_133261	126326		NM_133261	ENSG00000179855	GIPC3	C19orf64|DFNB15|DFNB72|DFNB95	GIPC PDZ domain containing family member 3	protein-coding
11577	chr1	91540971	91541130	+	0	NA	Intergenic	L2a|LINE|L2	39942	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
45227	chr11	117946651	117947530	+	0	NA	Intergenic	Intergenic	-17637	NM_001206790	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
189772	chr5	176654221	176654630	+	0	NA	intron (NM_001366492, intron 2 of 6)	intron (NM_001366492, intron 2 of 6)	6941	NM_001366491	26262		NM_012171	ENSG00000048140	TSPAN17	FBX23|FBXO23|TM4SF17	tetraspanin 17	protein-coding
112975	chr19	7865101	7865300	+	0	NA	TTS (NM_001159944)	TTS (NM_001159944)	9190	NR_104345	80164		NM_025094	ENSG00000183248	PRR36	-	proline rich 36	protein-coding
13196	chr1	112626471	112626630	+	0	NA	intron (NM_006135, intron 1 of 9)	L1ME4b|LINE|L1	6718	NM_006135	829		NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line subunit alpha 1	protein-coding
1727	chr1	5829651	5829750	+	0	NA	Intergenic	(GATGGT)n|Simple_repeat|Simple_repeat	33041	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
131868	chr2	98709771	98709930	+	0	NA	intron (NM_012214, intron 2 of 15)	intron (NM_012214, intron 2 of 15)	21282	NM_012214	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
147666	chr20	62290451	62290750	+	0	NA	intron (NM_144498, intron 12 of 13)	AluY|SINE|Alu	-12296	NM_001281437	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
194049	chr6	31849471	31850580	+	0	NA	Intergenic	AluSq|SINE|Alu	12796	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
182309	chr5	58759901	58760580	+	0	NA	intron (NM_138453, intron 3 of 4)	intron (NM_138453, intron 3 of 4)	177165	NM_138453	115827		NM_138453	ENSG00000152932	RAB3C	-	RAB3C, member RAS oncogene family	protein-coding
172673	chr4	2733201	2733780	+	0	NA	TTS (NM_001256666)	TTS (NM_001256666)	22846	NM_001292016	79155		NM_024309	ENSG00000168884	TNIP2	ABIN2|FLIP1|KLIP	TNFAIP3 interacting protein 2	protein-coding
75489	chr15	66302171	66302530	+	0	NA	intron (NM_001323948, intron 2 of 15)	AluJo|SINE|Alu	8535	NM_001323946	115752		NM_133375	ENSG00000166938	DIS3L	DIS3L1	DIS3 like exosome 3'-5' exoribonuclease	protein-coding
144619	chr20	35850051	35850550	+	0	NA	intron (NM_016436, intron 4 of 17)	(T)n|Simple_repeat|Simple_repeat	78285	NM_016436	51230		NM_016436	ENSG00000025293	PHF20	C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP	PHD finger protein 20	protein-coding
22783	chr1	224424801	224425880	+	0	NA	intron (NM_001115113, intron 3 of 13)	L3|LINE|CR1	-9300	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
71481	chr14	105961771	105961930	+	0	NA	Intergenic	L1PA4|LINE|L1	10419	NR_002224	8755		NR_002224	ENSG00000290844	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo
26818	chr10	23702921	23703180	+	0	NA	intron (NM_001098500, intron 1 of 18)	intron (NM_001098500, intron 1 of 18)	8323	NM_001098500	56243		NM_019590	ENSG00000120549	KIAA1217	ETL4|SKT	KIAA1217	protein-coding
218093	chr8	38962621	38963480	+	0	NA	intron (NM_021623, intron 10 of 11)	intron (NM_021623, intron 10 of 11)	-11178	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
227938	chr9	94374021	94376050	+	0	NA	intron (NM_032558, intron 1 of 11)	CpG	466	NM_032558	84641		NM_032558	ENSG00000148110	MFSD14B	HIATL1	major facilitator superfamily domain containing 14B	protein-coding
88889	chr16	87733221	87733700	+	0	NA	intron (NM_001351937, intron 5 of 11)	intron (NM_001351937, intron 5 of 11)	32526	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
51270	chr12	51160901	51161100	+	0	NA	intron (NM_001173453, intron 1 of 13)	L1M4|LINE|L1	12135	NM_005653	7024		NM_005653	ENSG00000135457	TFCP2	LBP1C|LSF|LSF1D|SEF|TFCP2C	transcription factor CP2	protein-coding
84908	chr16	31216501	31218400	+	0	NA	promoter-TSS (NM_152901)	promoter-TSS (NM_152901)	-315	NM_152901	260434		NM_152901	ENSG00000169900	PYDC1	ASC2|POP1|PYC1|cPOP1	pyrin domain containing 1	protein-coding
74533	chr15	60487171	60487330	+	0	NA	intron (NR_120341, intron 1 of 4)	AluSx3|SINE|Alu	8072	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
49123	chr12	14828951	14829150	+	0	NA	3' UTR (NM_021071, exon 3 of 3)	3' UTR (NM_021071, exon 3 of 3)	14476	NM_001354646	420		NM_021071	ENSG00000111339	ART4	ARTC4|CD297|DO|DO/ART4|DOK1	ADP-ribosyltransferase 4 (inactive) (Dombrock blood group)	protein-coding
194192	chr6	32147251	32147930	+	0	NA	TTS (NM_001363780).7	TTS (NM_001363780).7	4349	NM_030651	80863		NM_030651	ENSG00000204314	PRRT1	C6orf31|DSPD1|IFITMD7|NG5|SynDIG4	proline rich transmembrane protein 1	protein-coding
91528	chr17	4982251	4983080	+	0	NA	intron (NM_001171166, intron 4 of 20)	intron (NM_001171166, intron 4 of 20)	4796	NM_001171167	23125		NM_015099	ENSG00000108509	CAMTA2	-	calmodulin binding transcription activator 2	protein-coding
102799	chr17	76390071	76390230	+	0	NA	3' UTR (NM_022066, exon 18 of 18)	3' UTR (NM_022066, exon 18 of 18)	4872	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
64447	chr14	24230101	24230300	+	0	NA	intron (NR_137631, intron 1 of 6)	AluSc|SINE|Alu	2167	NM_006156	4738		NM_006156	ENSG00000129559	NEDD8	NEDD-8	NEDD8 ubiquitin like modifier	protein-coding
232797	chr9	136707121	136707380	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	-5322	NM_152421	138311		NM_152421	ENSG00000165716	DIPK1B	C9orf136|FAM69B|pp6977	divergent protein kinase domain 1B	protein-coding
26111	chr10	13352551	13352830	+	0	NA	Intergenic	Intergenic	-4392	NM_001195602	22929		NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding
148009	chr20	63055501	63055700	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	17589	NR_033369	100144597		NR_033369	ENSG00000237119	LINC01056	-	long intergenic non-protein coding RNA 1056	ncRNA
38441	chr11	45233521	45233880	+	0	NA	3' UTR (NM_001384648, exon 8 of 8)	3' UTR (NM_001384648, exon 8 of 8)	52641	NM_001247987	57586		NM_020826	ENSG00000019505	SYT13	-	synaptotagmin 13	protein-coding
4672	chr1	22539471	22539830	+	0	NA	Intergenic	L1MB7|LINE|L1	-23839	NM_001006943	2046		NM_020526	ENSG00000070886	EPHA8	EEK|EK3|HEK3	EPH receptor A8	protein-coding
31994	chr10	100912301	100913750	+	0	NA	promoter-TSS (NM_001136123)	promoter-TSS (NM_001136123)	62	NM_001243770	55719		NM_018121	ENSG00000119906	SLF2	ATELS1|C10orf6|FAM178A	SMC5-SMC6 complex localization factor 2	protein-coding
12838	chr1	110058151	110058530	+	0	NA	Intergenic	Intergenic	12332	NM_006492	257		NM_006492	ENSG00000156150	ALX3	FND|FND1	ALX homeobox 3	protein-coding
13358	chr1	113869651	113869750	+	0	NA	intron (NM_012411, intron 1 of 18)	intron (NM_012411, intron 1 of 18)	2012	NM_015967	26191		NM_012411	ENSG00000134242	PTPN22	LYP|LYP1|LYP2|PEP|PTPN22.5|PTPN22.6|PTPN8	protein tyrosine phosphatase non-receptor type 22	protein-coding
182003	chr5	55304171	55304430	+	0	NA	intron (NR_144324, intron 1 of 26)	L2a|LINE|L2	3394	NM_001345965	54505		NM_019030	ENSG00000067248	DHX29	DDX29	DExH-box helicase 29	protein-coding
216881	chr8	22648251	22648750	+	0	NA	intron (NR_156436, intron 1 of 9)	L1MC3|LINE|L1	-6291	NR_027715	80094		NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA
218399	chr8	47255501	47255700	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-5278	NM_001352957	23514		NM_001080394	ENSG00000164808	SPIDR	KIAA0146|ODG9	scaffold protein involved in DNA repair	protein-coding
37847	chr11	33699521	33699780	+	0	NA	intron (NM_001166692, intron 1 of 1)	intron (NM_001166692, intron 1 of 1)	1090	NM_001166692	100131378		NM_001166692	ENSG00000205177	C11orf91	-	chromosome 11 open reading frame 91	protein-coding
227074	chr9	84668351	84669100	+	0	NA	promoter-TSS (NM_001018065)	promoter-TSS (NM_001018065)	203	NM_001369543	4915		NM_006180	ENSG00000148053	NTRK2	DEE58|EIEE58|GP145-TrkB|OBHD|TRKB|trk-B	neurotrophic receptor tyrosine kinase 2	protein-coding
29541	chr10	71209021	71209300	+	0	NA	Intergenic	Intergenic	-3410	NM_170744	219699		NM_170744	ENSG00000107731	UNC5B	UNC5H2|p53RDL1	unc-5 netrin receptor B	protein-coding
194343	chr6	32869701	32870380	+	0	NA	Intergenic	L1MD1|LINE|L1	15848	NM_002800	5698		NM_002800	ENSG00000240065	PSMB9	LMP2|PRAAS3|PRAAS6|PSMB6i|RING12|beta1i	proteasome 20S subunit beta 9	protein-coding
101108	chr17	65005621	65006080	+	0	NA	Intergenic	AluSx|SINE|Alu	-30265	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
110979	chr19	2976771	2977850	+	0	NA	promoter-TSS (NM_024760)	promoter-TSS (NM_024760)	-254	NM_001143986	79816		NM_024760	ENSG00000104953	TLE6	GRG6|OZEMA15|PREMBL	TLE family member 6, subcortical maternal complex member	protein-coding
235184	chrX	41331301	41331900	+	0	NA	Intergenic	Intergenic	-1708	NR_126093	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
194227	chr6	32244671	32245480	+	0	NA	Intergenic	Intergenic	-10098	NR_136245	101929163		NM_001013681	ENSG00000225914	TSBP1-AS1	-	TSBP1 and BTNL2 antisense RNA 1	ncRNA
46108	chr11	122877651	122878250	+	0	NA	Intergenic	Intergenic	-4578	NM_199124	79864		NM_024806	ENSG00000109944	JHY	C11orf63	junctional cadherin complex regulator	protein-coding
186242	chr5	134409351	134410200	+	0	NA	intron (NM_080656, intron 2 of 2)	intron (NM_080656, intron 2 of 2)	2106	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
124120	chr19	55667451	55667750	+	0	NA	intron (NM_007279, intron 7 of 11)	intron (NM_007279, intron 7 of 11)	-7595	NM_001321263	29924		NM_013333	ENSG00000063245	EPN1	-	epsin 1	protein-coding
224626	chr9	20552171	20552550	+	0	NA	intron (NM_001286691, intron 2 of 10)	intron (NM_001286691, intron 2 of 10)	-50018	NR_039685	100616441		NR_039685	ENSG00000264941	MIR4474	-	microRNA 4474	ncRNA
46460	chr11	128271321	128272680	+	0	NA	Intergenic	L1ME3G|LINE|L1	63234	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
147698	chr20	62326171	62326750	+	0	NA	intron (NM_005560, intron 40 of 79)	intron (NM_005560, intron 40 of 79)	6097	NR_039915	100616340		NR_039915	ENSG00000284074	MIR4758	-	microRNA 4758	ncRNA
180305	chr5	5464051	5464150	+	0	NA	exon (NM_015325, exon 13 of 19)	exon (NM_015325, exon 13 of 19)	41423	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
131896	chr2	98757421	98758390	+	0	NA	Intergenic	Intergenic	13993	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
67399	chr14	69791971	69792130	+	0	NA	intron (NM_003049, intron 1 of 4)	AluSz6|SINE|Alu	5191	NM_003049	6554		NM_003049	ENSG00000100652	SLC10A1	FHCA2|NTCP	solute carrier family 10 member 1	protein-coding
93933	chr17	21304321	21305130	+	0	NA	intron (NM_145109, intron 8 of 11)	intron (NM_145109, intron 8 of 11)	16689	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
148303	chr20	63730201	63731480	+	0	NA	intron (NM_181485, intron 2 of 6)	Charlie18a|DNA|hAT-Charlie	-4861	NM_001305654	54923		NM_017806	ENSG00000203896	LIME1	LIME|dJ583P15.4	Lck interacting transmembrane adaptor 1	protein-coding
159572	chr3	14950001	14950450	+	0	NA	intron (NM_003298, intron 1 of 14)	MIRc|SINE|MIR	-1784	NR_046251	100505641		NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA
42066	chr11	67485001	67485530	+	0	NA	intron (NM_001302959, intron 1 of 5)	LTR1A2|LTR|ERV1	1749	NM_001302959	9049		NM_003977	ENSG00000110711	AIP	ARA9|FKBP16|FKBP37|PITA1|SMTPHN|XAP-2|XAP2	aryl hydrocarbon receptor interacting protein	protein-coding
221045	chr8	116753921	116754180	+	0	NA	intron (NM_003756, intron 1 of 7)	intron (NM_003756, intron 1 of 7)	1773	NM_003756	8667		NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding
168621	chr3	149621321	149621780	+	0	NA	intron (NM_001348362, intron 5 of 9)	intron (NM_001348362, intron 5 of 9)	36475	NM_001168280	25937		NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding
105113	chr17	82210751	82211080	+	0	NA	intron (NM_001316321, intron 1 of 14)	AluSx1|SINE|Alu	1927	NM_198082	284001		NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding
12131	chr1	100066071	100066550	+	0	NA	intron (NM_033055, intron 5 of 11)	intron (NM_033055, intron 5 of 11)	28215	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
145388	chr20	41319421	41319880	+	0	NA	Intergenic	L2a|LINE|L2	-1919	NM_001384317	23051		NM_015035	ENSG00000174306	ZHX3	TIX1	zinc fingers and homeoboxes 3	protein-coding
100795	chr17	64027221	64027700	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-6826	NM_001099787	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
233824	chrX	1483171	1483350	+	0	NA	intron (NM_178129, intron 1 of 1)	intron (NM_178129, intron 1 of 1)	-29498	NM_001173473	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
66918	chr14	65336121	65336630	+	0	NA	Intergenic	L2a|LINE|L2	-1192	NR_039857	100616176		NR_039857	ENSG00000266740	MIR4708	mir-4708	microRNA 4708	ncRNA
113246	chr19	8496571	8496730	+	0	NA	intron (NM_032152, intron 4 of 9)	AluSz|SINE|Alu	5990	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
46495	chr11	128346851	128347350	+	0	NA	Intergenic	Intergenic	138334	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
192523	chr6	25037371	25037750	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	4728	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
46801	chr11	130243801	130244400	+	0	NA	intron (NM_001370222, intron 1 of 4)	intron (NM_001370222, intron 1 of 4)	70612	NM_001301099	29068		NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding
89321	chr16	88732801	88733800	+	0	NA	exon (NM_001142864, exon 19 of 51)	exon (NM_001142864, exon 19 of 51)	2120	NR_103774	100289580		NM_207451		HSALR1	-	HSP90AB1 associated lncRNA 1	ncRNA
154352	chr22	32723571	32723950	+	0	NA	intron (NM_133633, intron 5 of 11)	intron (NM_133633, intron 5 of 11)	-77945	NM_000362	7078		NM_000362	ENSG00000100234	TIMP3	HSMRK222|K222|K222TA2|SFD	TIMP metallopeptidase inhibitor 3	protein-coding
210072	chr7	96471571	96471950	+	0	NA	Intergenic	L1PBa|LINE|L1	31763	NR_163949	7979		NM_006304	ENSG00000127922	SEM1	C7orf76|DSS1|ECD|PSMD15|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1 26S proteasome subunit	protein-coding
203525	chr7	786471	787130	+	0	NA	TTS (NM_017802)	TTS (NM_017802)	-28757	NM_001171946	23353		NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding
61254	chr13	50053371	50053530	+	0	NA	intron (NR_152566, intron 5 of 13)	L1MB3|LINE|L1	-4249	NR_029485	406948		NR_029485	ENSG00000283785	MIR15A	MIRN15A|hsa-mir-15a|miRNA15A|mir-15a	microRNA 15a	ncRNA
2270	chr1	8928951	8929050	+	0	NA	Intergenic	AluSg7|SINE|Alu	-16868	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
171321	chr3	195979871	195980650	+	0	NA	intron (NR_003264, intron 6 of 16)	AluSx|SINE|Alu	10019	NR_003264	255812		NR_003264	ENSG00000290763	SDHAP1	SDHAL1|SDHALP1	SDHA pseudogene 1	pseudo
230498	chr9	128249601	128251850	+	0	NA	exon (NM_001005336, exon 21 of 23)	exon (NM_001005336, exon 21 of 23)	-5695	NR_036110	100422893		NR_036110	ENSG00000264823	MIR3154	mir-3154	microRNA 3154	ncRNA
61432	chr13	51828251	51828550	+	0	NA	intron (NM_001351003, intron 2 of 4)	intron (NM_001351003, intron 2 of 4)	16777	NM_001351003	283521		NM_178515	ENSG00000281106	TMEM272	LINC00282|NCRNA00282	transmembrane protein 272	protein-coding
127277	chr2	38722141	38723180	+	0	NA	intron (NM_138801, intron 4 of 6)	intron (NM_138801, intron 4 of 6)	28701	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
197170	chr6	59811271	59811430	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1762780	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2 like 9 (pseudogene)	pseudo
131437	chr2	96304921	96306630	+	0	NA	promoter-TSS (NM_014014)	promoter-TSS (NM_014014)	-229	NM_014014	23020		NM_014014	ENSG00000144028	SNRNP200	ASCC3L1|BRR2|HELIC2|RP33|U5-200KD	small nuclear ribonucleoprotein U5 subunit 200	protein-coding
191558	chr6	11722321	11722680	+	0	NA	intron (NM_032744, intron 5 of 5)	intron (NM_032744, intron 5 of 5)	56303	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
201439	chr6	147284801	147285400	+	0	NA	intron (NM_139244, intron 8 of 25)	intron (NM_139244, intron 8 of 25)	-80486	NR_034115	729178		NR_034115	ENSG00000233452	STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA
226423	chr9	70566201	70566400	+	0	NA	intron (NM_206947, intron 21 of 24)	L2a|LINE|L2	-151643	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
98643	chr17	47817121	47817380	+	0	NA	intron (NM_145798, intron 8 of 22)	intron (NM_145798, intron 8 of 22)	4544	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
159465	chr3	14134101	14134300	+	0	NA	intron (NM_024334, intron 7 of 11)	intron (NM_024334, intron 7 of 11)	9148	NM_024334	79188		NM_024334	ENSG00000170876	TMEM43	ARVC5|ARVD5|AUNA3|EDMD7|EDMD7; AUNA2|LUMA	transmembrane protein 43	protein-coding
149795	chr21	34946421	34946950	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-57986	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
17006	chr1	156015401	156015800	+	0	NA	intron (NM_003145, intron 3 of 5)	intron (NM_003145, intron 3 of 5)	5351	NM_003145	6746		NM_003145	ENSG00000163479	SSR2	HSD25|TLAP|TRAP-BETA|TRAPB	signal sequence receptor subunit 2	protein-coding
62921	chr13	111153151	111154300	+	0	NA	promoter-TSS (NM_001354058)	promoter-TSS (NM_001354058)	59	NM_001330598	8874		NM_003899	ENSG00000102606	ARHGEF7	BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB	Rho guanine nucleotide exchange factor 7	protein-coding
77524	chr15	84701051	84701230	+	0	NA	intron (NM_001271920, intron 1 of 6)	L1MEc|LINE|L1	14999	NM_014300	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
73726	chr15	45179251	45180800	+	0	NA	intron (NM_138356, intron 2 of 7)	intron (NM_138356, intron 2 of 7)	1182	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
79682	chr16	1255921	1256430	+	0	NA	5' UTR (NM_012217, exon 1 of 5)	5' UTR (NM_012217, exon 1 of 5)	106	NM_012217	23430		NM_012217	ENSG00000095917	TPSD1	MCP7-LIKE|MCP7L1|MMCP-7L	tryptase delta 1	protein-coding
61774	chr13	74835271	74835830	+	0	NA	Intergenic	Intergenic	282707	NR_034025	338864		NR_034024	ENSG00000236678	LINC00347	-	long intergenic non-protein coding RNA 347	ncRNA
123486	chr19	54187871	54188700	+	0	NA	exon (NM_001146083, exon 3 of 7).6	exon (NM_001146083, exon 3 of 7).6	1295	NM_024298	79143		NM_024298	ENSG00000125505	MBOAT7	BB1|LENG4|LPIAT|LPIAT1|LPLAT|LPLAT11|LRC4|MBOA7|MRT57|OACT7|hMBOA-7	membrane bound O-acyltransferase domain containing 7	protein-coding
132088	chr2	101306521	101307600	+	0	NA	intron (NM_173647, intron 1 of 6)	intron (NM_173647, intron 1 of 6)	1641	NM_173647	284996		NM_173647	ENSG00000163162	RNF149	DNAPTP2	ring finger protein 149	protein-coding
81223	chr16	4526801	4527350	+	0	NA	intron (NM_001199055, intron 1 of 5)	intron (NM_001199055, intron 1 of 5)	11354	NM_001199054	29965		NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
215135	chr7	155406921	155407180	+	0	NA	Intergenic	Intergenic	24974	NR_147174	100286906		NR_147174		LINC03010	-	long intergenic non-protein coding RNA 3010	ncRNA
61615	chr13	73699071	73699430	+	0	NA	intron (NM_007249, intron 7 of 7)	AluJr|SINE|Alu	135006	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
34573	chr10	133233821	133234400	+	0	NA	Intergenic	AluJb|SINE|Alu	-3745	NM_014468	27287		NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
95408	chr17	36069101	36069750	+	0	NA	intron (NM_002988, intron 1 of 2).3	intron (NM_002988, intron 1 of 2).3	5153	NM_002988	6362		NM_002988	ENSG00000275385	CCL18	AMAC-1|AMAC1|CKb7|DC-CK1|DCCK1|MIP-4|PARC|SCYA18	C-C motif chemokine ligand 18	protein-coding
1246	chr1	2290081	2291400	+	0	NA	intron (NM_003036, intron 1 of 6)	intron (NM_003036, intron 1 of 6)	61921	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
95160	chr17	35119331	35120430	+	0	NA	promoter-TSS (NR_037711)	promoter-TSS (NR_037711)	-20	NM_002878	5892		NM_002878	ENSG00000185379	RAD51D	BROVCA4|R51H3|RAD51L3|TRAD	RAD51 paralog D	protein-coding
124773	chr2	7127921	7128230	+	0	NA	Intergenic	Intergenic	-50195	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA
115707	chr19	16212471	16212830	+	0	NA	intron (NM_001130524, intron 6 of 12)	L1ME1|LINE|L1	14739	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
156122	chr22	40103471	40103830	+	0	NA	intron (NM_001024843, intron 1 of 23)	AluSx|SINE|Alu	58833	NM_001024843	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
194076	chr6	31877801	31878000	+	0	NA	promoter-TSS (NM_001178045).5	promoter-TSS (NM_001178045).5	-229	NM_001178045	80736		NM_025257	ENSG00000204385	SLC44A4	C6orf29|CTL4|DFNA72|NG22|TPPT|hTPPT1	solute carrier family 44 member 4	protein-coding
171827	chr4	677201	677400	+	0	NA	promoter-TSS (NM_002477)	promoter-TSS (NM_002477)	-622	NM_002477	4636		NM_002477	ENSG00000215375	MYL5	MYLC2	myosin light chain 5	protein-coding
95195	chr17	35219801	35220200	+	0	NA	Intergenic	MIRb|SINE|MIR	-23072	NM_144975	162394		NM_144975	ENSG00000166750	SLFN5	-	schlafen family member 5	protein-coding
197624	chr6	83086751	83087080	+	0	NA	intron (NM_015018, intron 1 of 38)	(GTTTTA)n|Simple_repeat|Simple_repeat	19249	NM_015018	23033		NM_015018	ENSG00000083097	DOP1A	DOP1|DOPEY1|KIAA1117|dJ202D23.2	DOP1 leucine zipper like protein A	protein-coding
180667	chr5	18741721	18742180	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	934676	NR_134287	646241		NR_134286		LINC02223	-	long intergenic non-protein coding RNA 2223	ncRNA
198432	chr6	106097071	106098300	+	0	NA	intron (NM_001198, intron 3 of 6)	intron (NM_001198, intron 3 of 6)	-1256	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
124674	chr2	3315301	3315850	+	0	NA	intron (NM_001330530, intron 3 of 9)	(CCCAT)n|Simple_repeat|Simple_repeat	62243	NM_003310	7260		NM_003310	ENSG00000032389	EIPR1	EIPR-1|TSSC1	EARP complex and GARP complex interacting protein 1	protein-coding
903	chr1	1681521	1682080	+	0	NA	intron (NM_001110781, intron 1 of 8)	AluY|SINE|Alu	10995	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
7328	chr1	32689051	32689150	+	0	NA	intron (NM_030786, intron 2 of 4)	AluSc|SINE|Alu	13670	NM_030786	81493		NM_030786	ENSG00000162520	SYNC	SYNC1|SYNCOILIN	syncoilin, intermediate filament protein	protein-coding
210168	chr7	98294901	98295300	+	0	NA	intron (NM_018842, intron 12 of 13)	intron (NM_018842, intron 12 of 13)	13414	NM_015379	25798		NM_015379	ENSG00000164713	BRI3	I3	brain protein I3	protein-coding
4740	chr1	23424201	23425650	+	0	NA	promoter-TSS (NM_003196).2	promoter-TSS (NM_003196).2	-177	NM_003196	6920		NM_003196	ENSG00000204219	TCEA3	TFIIS|TFIIS.H	transcription elongation factor A3	protein-coding
207188	chr7	43622901	43623480	+	0	NA	intron (NM_004760, intron 4 of 6)	L2|LINE|L2	40082	NM_004760	9263		NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding
80173	chr16	2117451	2117550	+	0	NA	exon (NM_000296, exon 6 of 46)	exon (NM_000296, exon 6 of 46)	-10747	NR_106775	102465429		NR_106775	ENSG00000284008	MIR6511B1	MIR6511B-1|hsa-mir-6511b-1	microRNA 6511b-1	ncRNA
127026	chr2	37082321	37082600	+	0	NA	intron (NM_019024, intron 2 of 35)	MER9a2|LTR|ERVK	1912	NM_019024	54497		NM_019024	ENSG00000008869	HEATR5B	p200|p200a	HEAT repeat containing 5B	protein-coding
216387	chr8	17923901	17924950	+	0	NA	intron (NM_001352651, intron 1 of 38)	intron (NM_001352651, intron 1 of 38)	1437	NM_001352655	5108		NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding
99824	chr17	55073001	55073400	+	0	NA	intron (NM_178509, intron 13 of 17)	intron (NM_178509, intron 13 of 17)	-104415	NM_001162862	1353		NM_004375	ENSG00000166260	COX11	COX11P|MC4DN23	cytochrome c oxidase copper chaperone COX11	protein-coding
87945	chr16	79589471	79590230	+	0	NA	Intergenic	CpG	10887	NM_005360	4094		NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
8105	chr1	39186771	39186930	+	0	NA	intron (NM_012090, intron 1 of 92)	AluJr|SINE|Alu	102683	NM_012090	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
72190	chr15	30075151	30075500	+	0	NA	Intergenic	Intergenic	-7630	NM_001282472	653073		NM_001282472	ENSG00000179938	GOLGA8J	-	golgin A8 family member J	protein-coding
139115	chr2	218962851	218963750	+	0	NA	Intergenic	CpG	3634	NM_003936	8941		NM_003936	ENSG00000171450	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin dependent kinase 5 regulatory subunit 2	protein-coding
36502	chr11	6404121	6405180	+	0	NA	promoter-TSS (NM_001257325)	promoter-TSS (NM_001257325)	41	NM_001257325	322		NM_001164	ENSG00000166313	APBB1	FE65|MGC:9072|RIR	amyloid beta precursor protein binding family B member 1	protein-coding
206816	chr7	37100821	37101100	+	0	NA	intron (NM_014800, intron 14 of 21)	intron (NM_014800, intron 14 of 21)	103164	NR_104120	100861514		NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA
114971	chr19	14015351	14016030	+	0	NA	Intergenic	L1ME4b|LINE|L1	-9370	NM_002918	5989		NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding
31068	chr10	88998201	88999180	+	0	NA	intron (NR_135314, intron 1 of 8)	MIRc|SINE|MIR	-5715	NR_028371	100302740		NR_028371		FAS-AS1	FAS-AS|FASAS|SAF	FAS antisense RNA 1	ncRNA
197723	chr6	87010221	87010480	+	0	NA	intron (NM_000865, intron 1 of 1)	SVA_F|Retroposon|SVA	72822	NM_000865	3354		NM_000865	ENSG00000168830	HTR1E	5-HT1E	5-hydroxytryptamine receptor 1E	protein-coding
30766	chr10	84330121	84330680	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	1811	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
133876	chr2	129877051	129878680	+	0	NA	promoter-TSS (NR_149127)	promoter-TSS (NR_149127)	-374	NR_149127	105373615		NR_149127	ENSG00000229536	LINC02572	-	long intergenic non-protein coding RNA 2572	ncRNA
104518	chr17	81236751	81237050	+	0	NA	intron (NM_144679, intron 3 of 11)	intron (NM_144679, intron 3 of 11)	2155	NM_144679	146705		NM_144679	ENSG00000167302	TEPSIN	C17orf56|ENTHD2	TEPSIN adaptor related protein complex 4 accessory protein	protein-coding
67197	chr14	68911571	68912580	+	0	NA	intron (NM_001130004, intron 4 of 21)	intron (NM_001130004, intron 4 of 21)	67227	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
126350	chr2	27408001	27408200	+	0	NA	intron (NM_177983, intron 1 of 9)	MIR3|SINE|MIR	1491	NM_177983	5496		NM_177983	ENSG00000115241	PPM1G	PP2CG|PP2CGAMMA|PPP2CG	protein phosphatase, Mg2+/Mn2+ dependent 1G	protein-coding
157309	chr22	44495601	44496730	+	0	NA	3' UTR (NM_032287, exon 2 of 2)	3' UTR (NM_032287, exon 2 of 2)	2068	NM_032287	84247		NM_032287	ENSG00000188636	RTL6	LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2	retrotransposon Gag like 6	protein-coding
116030	chr19	17179101	17179700	+	0	NA	intron (NM_004145, intron 14 of 39)	intron (NM_004145, intron 14 of 39)	-35957	NM_018467	55850		NM_018467	ENSG00000053501	USE1	D12|MDS032|P31|SLT1	unconventional SNARE in the ER 1	protein-coding
94420	chr17	29118271	29118430	+	0	NA	intron (NM_203318, intron 9 of 40)	intron (NM_203318, intron 9 of 40)	22039	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
48727	chr12	10707151	10708300	+	0	NA	intron (NM_001145426, intron 5 of 8)	L2|LINE|L2	15598	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
53344	chr12	64639001	64639200	+	0	NA	intron (NR_040718, intron 1 of 3)	intron (NR_040718, intron 1 of 3)	-16495	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
206531	chr7	35035371	35036000	+	0	NA	intron (NM_015283, intron 1 of 21)	intron (NM_015283, intron 1 of 21)	1800	NM_001366673	23333		NM_015283	ENSG00000173852	DPY19L1	-	dpy-19 like C-mannosyltransferase 1	protein-coding
72165	chr15	29117971	29118130	+	0	NA	3' UTR (NM_001379685, exon 16 of 16)	3' UTR (NM_001379685, exon 16 of 16)	47392	NM_001353796	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
134923	chr2	151286401	151286900	+	0	NA	intron (NM_004688, intron 1 of 7)	LTR48B|LTR|ERV1	3018	NM_004688	9111		NM_004688	ENSG00000123609	NMI	-	N-myc and STAT interactor	protein-coding
50731	chr12	48979301	48982550	+	0	NA	intron (NM_005430, intron 3 of 3)	CpG-5498	2603	NM_005430	7471		NM_005430	ENSG00000125084	WNT1	BMND16|INT1|OI15	Wnt family member 1	protein-coding
55973	chr12	110113601	110113800	+	0	NA	Intergenic	AluSz6|SINE|Alu	-10657	NM_031473	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
210196	chr7	98933051	98933350	+	0	NA	intron (NM_001375524, intron 26 of 72)	intron (NM_001375524, intron 26 of 72)	51503	NR_132754	106633801		NR_132754		SCARNA28	ZL1	small Cajal body-specific RNA 28	ncRNA
89091	chr16	88480851	88481150	+	0	NA	intron (NM_153813, intron 1 of 9)	intron (NM_153813, intron 1 of 9)	12082	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
150610	chr21	43365901	43366100	+	0	NA	Intergenic	Intergenic	-3651	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
1775	chr1	6036501	6036700	+	0	NA	intron (NM_001199860, intron 1 of 15)	L2a|LINE|L2	1912	NM_001199860	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
110690	chr19	2283221	2283800	+	0	NA	Intergenic	AluJr|SINE|Alu	-1335	NM_198532	374872		NM_198532	ENSG00000188305	PEAK3	C19orf35	PEAK family member 3	protein-coding
21144	chr1	203673801	203674700	+	0	NA	intron (NM_001365784, intron 1 of 20)	intron (NM_001365784, intron 1 of 20)	46313	NM_001365784	493		NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
149822	chr21	35016351	35016450	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	23026	NR_026812	80215		NM_025143		RUNX1-IT1	C21orf96	RUNX1 intronic transcript 1	ncRNA
58953	chr13	19781801	19783880	+	0	NA	non-coding (NR_003272, exon 1 of 8)	non-coding (NR_003272, exon 1 of 8)	105	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
119263	chr19	39513901	39514100	+	0	NA	Intergenic	Intergenic	-1113	NM_182704	348303		NM_182704	ENSG00000186838	SELENOV	SELV	selenoprotein V	protein-coding
9476	chr1	50959321	50960700	+	0	NA	5' UTR (NM_007051, exon 1 of 19)	5' UTR (NM_007051, exon 1 of 19)	257	NM_007051	11124		NM_007051	ENSG00000185104	FAF1	CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1	Fas associated factor 1	protein-coding
153854	chr22	30220171	30220630	+	0	NA	Intergenic	L1MB8|LINE|L1	-18794	NR_149070	110806283		NR_149070	ENSG00000232530	LIF-AS1	Lnc-LIF-AS	LIF antisense RNA 1	ncRNA
68105	chr14	75307751	75308250	+	0	NA	Intergenic	Intergenic	13596	NR_038421	731223		NR_038421		LINC01220	-	long intergenic non-protein coding RNA 1220	ncRNA
26450	chr10	17452171	17452600	+	0	NA	intron (NR_144322, intron 2 of 6)	intron (NR_144322, intron 2 of 6)	2210	NM_001345961	338596		NM_001004470	ENSG00000148488	ST8SIA6	SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
166906	chr3	124878851	124879150	+	0	NA	intron (NM_001354766, intron 1 of 13)	intron (NM_001354766, intron 1 of 13)	8365	NM_002213	3693		NM_002213	ENSG00000082781	ITGB5	-	integrin subunit beta 5	protein-coding
44002	chr11	94545601	94545850	+	0	NA	TTS (NR_135094)	TTS (NR_135094)	1874	NM_002033	2526		NM_002033	ENSG00000196371	FUT4	CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1	fucosyltransferase 4	protein-coding
114308	chr19	11923471	11924000	+	0	NA	Intergenic	Intergenic	-1333	NM_001271848	90592		NM_144566	ENSG00000196757	ZNF700	-	zinc finger protein 700	protein-coding
216014	chr8	9011801	9012480	+	0	NA	intron (NM_153332, intron 3 of 6).2	MER5B|DNA|hAT-Charlie	9026	NM_001354635	90459		NM_153332	ENSG00000104626	ERI1	3'HEXO|HEXO|HXAL|SEMDGC|SEMDGS|THEX1	exoribonuclease 1	protein-coding
185401	chr5	128905521	128905780	+	0	NA	Intergenic	Intergenic	-59477	NM_014031	28965		NM_014031	ENSG00000113396	SLC27A6	ACSVL2|FACVL2|FATP6|VLCS-H1	solute carrier family 27 member 6	protein-coding
125232	chr2	10379301	10379500	+	0	NA	intron (NM_001258359, intron 1 of 4)	intron (NM_001258359, intron 1 of 4)	10636	NM_001258359	3241		NM_002149	ENSG00000115756	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin like 1	protein-coding
107599	chr18	48914571	48914730	+	0	NA	Intergenic	Intergenic	28157	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
237597	chrX	123884571	123885030	+	0	NA	intron (NM_001378590, intron 1 of 6)	intron (NM_001378590, intron 1 of 6)	24350	NM_001378590	331		NM_001167	ENSG00000101966	XIAP	API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3	X-linked inhibitor of apoptosis	protein-coding
22056	chr1	211261751	211262250	+	0	NA	intron (NR_146432, intron 2 of 12)	MIRb|SINE|MIR	2053	NM_018254	55758		NM_018254	ENSG00000117625	RCOR3	-	REST corepressor 3	protein-coding
157003	chr22	42515451	42515630	+	0	NA	intron (NM_015703, intron 3 of 6)	intron (NM_015703, intron 3 of 6)	4256	NM_015703	27341		NM_015703	ENSG00000189306	RRP7A	BK126B4.3|CGI-96|MCPH28|Rrp7	ribosomal RNA processing 7 homolog A	protein-coding
69631	chr14	97707531	97708200	+	0	NA	Intergenic	Intergenic	-21207	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
140611	chr2	233418021	233419340	+	0	NA	promoter-TSS (NM_001377259)	promoter-TSS (NM_001377259)	-532	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
173410	chr4	8117271	8117580	+	0	NA	intron (NM_001130086, intron 1 of 17)	intron (NM_001130086, intron 1 of 17)	41388	NM_001130085	84448		NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
190041	chr5	177518571	177519300	+	0	NA	TTS (NM_001366499)	TTS (NM_001366499)	-1974	NM_016222	51428		NM_016222	ENSG00000183258	DDX41	ABS|MPLPF	DEAD-box helicase 41	protein-coding
68498	chr14	88129801	88130100	+	0	NA	Intergenic	Intergenic	-103638	NR_110121	101928791		NR_110121		LINC01147	-	long intergenic non-protein coding RNA 1147	ncRNA
166656	chr3	120040301	120040500	+	0	NA	intron (NM_001146156, intron 1 of 10)	HERVIP10B3-int|LTR|ERV1	44248	NR_162125	113839522		NR_162125		MIR6529	-	microRNA 6529	ncRNA
141833	chr20	419571	421500	+	0	NA	intron (NM_001323958, intron 5 of 9)	intron (NM_001323958, intron 5 of 9)	12236	NR_136659	10616		NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RANBP2-type and C3HC4-type zinc finger containing 1	protein-coding
105360	chr17	82644071	82644430	+	0	NA	intron (NM_019613, intron 1 of 9)	intron (NM_019613, intron 1 of 9)	4194	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
48915	chr12	12614951	12615050	+	0	NA	intron (NM_001310, intron 1 of 3)	AluSx|SINE|Alu	3124	NM_001310	1389		NM_001310	ENSG00000111269	CREBL2	-	cAMP responsive element binding protein like 2	protein-coding
51750	chr12	53260571	53260730	+	0	NA	Intergenic	AluY|SINE|Alu	-7649	NM_012291	9700		NM_012291	ENSG00000135476	ESPL1	ESP1|SEPA	extra spindle pole bodies like 1, separase	protein-coding
203341	chr6	170274171	170274530	+	0	NA	non-coding (NR_104177, exon 1 of 2)	non-coding (NR_104177, exon 1 of 2)	1876	NR_104177	401289		NR_104177		LINC01624	-	long intergenic non-protein coding RNA 1624	ncRNA
63007	chr13	112605651	112605750	+	0	NA	Intergenic	Intergenic	-17515	NM_001286279	10426		NM_006322	ENSG00000126216	TUBGCP3	104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex component 3	protein-coding
46286	chr11	124866121	124866930	+	0	NA	intron (NM_022370, intron 1 of 27)	CpG	1093	NM_022370	64221		NM_022370	ENSG00000154134	ROBO3	HGPPS|HGPPS1|HGPS|RBIG1|RIG1	roundabout guidance receptor 3	protein-coding
232542	chr9	136342521	136343380	+	0	NA	intron (NM_001145638, intron 9 of 13)	CpG	-10107	NM_001145639	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
113279	chr19	8530251	8530550	+	0	NA	intron (NM_012335, intron 20 of 27)	CpG	-16233	NM_001146175	84330		NM_032370	ENSG00000133250	ZNF414	ZFP414	zinc finger protein 414	protein-coding
147912	chr20	62901771	62902600	+	0	NA	intron (NM_001193369, intron 6 of 15)	intron (NM_001193369, intron 6 of 15)	-19282	NR_145839	109623463		NR_145839		SNORA117	-	small nucleolar RNA, H/ACA box 117	snoRNA
73203	chr15	41547021	41547280	+	0	NA	Intergenic	AluJb|SINE|Alu	-2893	NM_015540	26015		NM_015540	ENSG00000103932	RPAP1	-	RNA polymerase II associated protein 1	protein-coding
60112	chr13	37155401	37155600	+	0	NA	Intergenic	L1PA2|LINE|L1	-49836	NM_145203	122011		NM_145203	ENSG00000180138	CSNK1A1L	CK1	casein kinase 1 alpha 1 like	protein-coding
116217	chr19	17511901	17512850	+	0	NA	promoter-TSS (NR_147835)	promoter-TSS (NR_147835)	-486	NR_147835	100507551		NR_147835	ENSG00000269439	PGLS-DT	-	PGLS divergent transcript	ncRNA
237411	chrX	119614821	119615250	+	0	NA	TTS (NM_145800)	TTS (NM_145800)	-8611	NR_163972	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
156297	chr22	40519201	40520150	+	0	NA	intron (NM_001282661, intron 3 of 13)	intron (NM_001282661, intron 3 of 13)	-2125	NR_109965	101927257		NR_109965	ENSG00000232564	MRTFA-AS1	-	MRTFA antisense RNA 1	ncRNA
100822	chr17	64091121	64092100	+	0	NA	intron (NM_001433, intron 2 of 21)	intron (NM_001433, intron 2 of 21)	38534	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
47483	chr12	3933351	3933980	+	0	NA	Intergenic	L1MB1|LINE|L1	-60217	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
92544	chr17	8949171	8949850	+	0	NA	intron (NM_001142633, intron 1 of 18)	L3|LINE|CR1	16197	NM_001251851	23533		NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding
147283	chr20	57596701	57597350	+	0	NA	Intergenic	Intergenic	23401	NM_001160418	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
67029	chr14	67596421	67596680	+	0	NA	intron (NM_004569, intron 1 of 3)	L2c|LINE|L2	3718	NM_004569	5283		NM_004569	ENSG00000100564	PIGH	GPI-H	phosphatidylinositol glycan anchor biosynthesis class H	protein-coding
165055	chr3	71447721	71448480	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	93989	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
164453	chr3	59502871	59503030	+	0	NA	Intergenic	Intergenic	155547	NR_149028	339902		NR_149028		LOC339902	-	hCG1813818	ncRNA
177574	chr4	119439101	119439300	+	0	NA	Intergenic	Intergenic	15428	NR_135112	101926918		NR_135112	ENSG00000291202	GTF2IP12	-	general transcription factor IIi pseudogene 12	pseudo
40902	chr11	65148221	65148550	+	0	NA	Intergenic	AluSx|SINE|Alu	-13866	NM_032431	84447		NM_032431	ENSG00000162298	SYVN1	DER3|HRD1	synoviolin 1	protein-coding
92052	chr17	7502021	7502580	+	0	NA	intron (NM_000937, intron 15 of 29)	intron (NM_000937, intron 15 of 29)	17934	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
83589	chr16	28165751	28166250	+	0	NA	intron (NM_001270940, intron 7 of 24)	intron (NM_001270940, intron 7 of 24)	45965	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
46073	chr11	122780501	122780700	+	0	NA	intron (NM_032873, intron 4 of 13)	intron (NM_032873, intron 4 of 13)	-57900	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
109611	chr19	938551	939230	+	0	NA	intron (NM_005224, intron 3 of 8)	intron (NM_005224, intron 3 of 8)	12855	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
181130	chr5	37737751	37738380	+	0	NA	intron (NM_018034, intron 17 of 17)	intron (NM_018034, intron 17 of 17)	96757	NM_001278098	2668		NM_000514	ENSG00000168621	GDNF	ATF|ATF1|ATF2|HFB1-GDNF|HSCR3	glial cell derived neurotrophic factor	protein-coding
110946	chr19	2843201	2843400	+	0	NA	intron (NM_001172775, intron 1 of 3)	AluJb|SINE|Alu	1825	NM_152791	148254		NM_152791	ENSG00000186300	ZNF555	-	zinc finger protein 555	protein-coding
234322	chrX	13755221	13755530	+	0	NA	intron (NM_001330210, intron 13 of 23)	intron (NM_001330210, intron 13 of 23)	20627	NM_003611	8481		NM_003611	ENSG00000046651	OFD1	71-7A|CXorf5|JBTS10|RP23|SGBS2	OFD1 centriole and centriolar satellite protein	protein-coding
40371	chr11	63989971	63990330	+	0	NA	intron (NR_003089, intron 3 of 5)	intron (NR_003089, intron 3 of 5)	4297	NM_017670	55611		NM_017670	ENSG00000167770	OTUB1	HSPC263|OTB1|OTU1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein-coding
12720	chr1	109511221	109511800	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-1783	NM_020703	57463		NM_020703	ENSG00000181754	AMIGO1	ALI2|AMIGO|AMIGO-1	adhesion molecule with Ig like domain 1	protein-coding
171545	chr3	196784951	196785050	+	0	NA	intron (NM_002577, intron 2 of 14)	U6|snRNA|snRNA	45143	NM_002577	5062		NM_002577	ENSG00000180370	PAK2	KNO2|PAK65|PAKgamma	p21 (RAC1) activated kinase 2	protein-coding
161990	chr3	46362271	46362500	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-7757	NM_000579	1234		NM_000579	ENSG00000160791	CCR5	CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22	C-C motif chemokine receptor 5	protein-coding
144735	chr20	36583301	36583630	+	0	NA	intron (NM_001199535, intron 2 of 4)	AluJr|SINE|Alu	8911	NM_001199515	60436		NM_021809	ENSG00000118707	TGIF2	-	TGFB induced factor homeobox 2	protein-coding
48845	chr12	12371501	12371900	+	0	NA	intron (NM_058169, intron 2 of 3)	L1MEf|LINE|L1	14622	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
55600	chr12	106772871	106773030	+	0	NA	intron (NR_040246, intron 1 of 3)	intron (NR_040246, intron 1 of 3)	-1732	NM_001351363	55188		NM_018157	ENSG00000111785	RIC8B	RIC8|hSyn	RIC8 guanine nucleotide exchange factor B	protein-coding
74613	chr15	60594321	60594580	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	-1924	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
116503	chr19	18146671	18147130	+	0	NA	exon (NM_015016, exon 25 of 27)	exon (NM_015016, exon 25 of 27)	-6263	NR_073517	5296		NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA|p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding
73863	chr15	50260371	50261130	+	0	NA	intron (NM_002112, intron 2 of 11)	MIR|SINE|MIR	4976	NM_002112	3067		NM_002112	ENSG00000140287	HDC	-	histidine decarboxylase	protein-coding
119700	chr19	41122471	41123300	+	0	NA	exon (NM_000774, exon 7 of 10)	exon (NM_000774, exon 7 of 10)	8453	NM_000774	1572		NM_000774	ENSG00000197446	CYP2F1	C2F1|CYP2F|CYPIIF1	cytochrome P450 family 2 subfamily F member 1	protein-coding
185293	chr5	126544101	126544330	+	0	NA	3' UTR (NM_001202404, exon 16 of 16)	3' UTR (NM_001202404, exon 16 of 16)	51004	NM_001202404	501		NM_001182	ENSG00000164904	ALDH7A1	ATQ1|EPD|EPEO4|PDE	aldehyde dehydrogenase 7 family member A1	protein-coding
217594	chr8	29593021	29593280	+	0	NA	Intergenic	Intergenic	154959	NR_026765	619351		NR_026765	ENSG00000251191	LINC00589	C8orf75|TSLNC8	long intergenic non-protein coding RNA 589	ncRNA
106019	chr18	8062941	8063280	+	0	NA	intron (NM_001378146, intron 3 of 29)	L1PA2|LINE|L1	116235	NM_001378143	5797		NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase receptor type M	protein-coding
42081	chr11	67497951	67499280	+	0	NA	exon (NM_004910, exon 10 of 24)	exon (NM_004910, exon 10 of 24)	6748	NM_004910	9600		NM_004910	ENSG00000110697	PITPNM1	DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9	phosphatidylinositol transfer protein membrane associated 1	protein-coding
236017	chrX	54964821	54965300	+	0	NA	intron (NR_073450, intron 1 of 12)	L1MCa|LINE|L1	29128	NM_001271804	5207		NM_002625	ENSG00000158571	PFKFB1	F6PK|HL2K|PFRX	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding
103077	chr17	77319121	77319980	+	0	NA	promoter-TSS (NM_006640)	promoter-TSS (NM_006640)	35	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
143255	chr20	25066971	25067930	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9268	NM_001252675	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
228240	chr9	97938121	97938780	+	0	NA	promoter-TSS (NM_197978)	promoter-TSS (NM_197978)	-278	NM_197978	55363		NM_018437	ENSG00000136929	HEMGN	CT155|EDAG|EDAG-1|NDR	hemogen	protein-coding
60772	chr13	45121421	45121850	+	0	NA	intron (NM_004128, intron 1 of 7)	L2a|LINE|L2	1125	NM_004128	2963		NM_004128	ENSG00000188342	GTF2F2	BTF4|RAP30|TF2F2|TFIIF	general transcription factor IIF subunit 2	protein-coding
233079	chr9	137098771	137098930	+	0	NA	intron (NM_016219, intron 5 of 12)	FLAM_C|SINE|Alu	11865	NR_045721	11253		NM_016219	ENSG00000177239	MAN1B1	ERMAN1|ERManI|MANA-ER|MRT15	mannosidase alpha class 1B member 1	protein-coding
227829	chr9	93454471	93454800	+	0	NA	intron (NM_001286723, intron 1 of 9)	Tigger15a|DNA|TcMar-Tigger	-1034	NR_136229	158293		NM_198841	ENSG00000188938	FAM120AOS	C9orf10OS	family with sequence similarity 120 member A opposite strand	protein-coding
187730	chr5	143431451	143432330	+	0	NA	intron (NM_001018075, intron 1 of 8)	intron (NM_001018075, intron 1 of 8)	2919	NM_001364183	2908		NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding
39378	chr11	59772601	59773200	+	0	NA	intron (NM_004177, intron 1 of 10)	MIR|SINE|MIR	17524	NM_001178040	6809		NM_004177	ENSG00000166900	STX3	DIAR12|MVID2|RDMVID|STX3A	syntaxin 3	protein-coding
7590	chr1	35187951	35188050	+	0	NA	exon (NM_005066, exon 7 of 10)	exon (NM_005066, exon 7 of 10)	5145	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
2032	chr1	7699221	7699880	+	0	NA	intron (NM_001349613, intron 1 of 11)	L1MB8|LINE|L1	-5186	NM_001349622	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
4901	chr1	23809471	23810100	+	0	NA	intron (NM_001166059, intron 4 of 6)	intron (NM_001166059, intron 4 of 6)	-9031	NM_001008216	2582		NM_000403	ENSG00000117308	GALE	SDR1E1|THC13	UDP-galactose-4-epimerase	protein-coding
123722	chr19	55050021	55050530	+	0	NA	intron (NM_001145971, intron 3 of 6).10	AluSx3|SINE|Alu	-12011	NM_001256017	51206		NM_016363	ENSG00000088053	GP6	BDPLT11|GPIV|GPVI	glycoprotein VI platelet	protein-coding
3414	chr1	15764721	15765230	+	0	NA	5' UTR (NM_017556, exon 3 of 9)	5' UTR (NM_017556, exon 3 of 9)	476	NM_001024215	54751		NM_017556	ENSG00000162458	FBLIM1	CAL|FBLP-1|FBLP1	filamin binding LIM protein 1	protein-coding
178346	chr4	145920351	145920450	+	0	NA	intron (NM_178835, intron 1 of 14)	intron (NM_178835, intron 1 of 14)	18423	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
154184	chr22	31338801	31339000	+	0	NA	TTS (NR_110542)	TTS (NR_110542)	3551	NR_110542	101929760		NR_110542	ENSG00000228839	PIK3IP1-DT	PIK3IP1-AS1	PIK3IP1 divergent transcript	ncRNA
36356	chr11	3921501	3921700	+	0	NA	intron (NM_001382571, intron 1 of 9)	MLT1F1|LTR|ERVL-MaLR	65538	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
53006	chr12	57517571	57518480	+	0	NA	intron (NM_001195053, intron 1 of 3)	AluSc|SINE|Alu	1234	NR_030346	693201		NR_030346	ENSG00000208028	MIR616	MIRN616|hsa-mir-616	microRNA 616	ncRNA
176555	chr4	98544471	98544630	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	114061	NM_005723	10098		NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding
129012	chr2	64864021	64864480	+	0	NA	promoter-TSS (NR_110224)	promoter-TSS (NR_110224)	-619	NR_110224	101927438		NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA
57358	chr12	121780651	121780980	+	0	NA	3' UTR (NM_001080825, exon 12 of 12)	3' UTR (NM_001080825, exon 12 of 12)	12873	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
152398	chr22	20549001	20549910	+	0	NA	intron (NM_001003891, intron 2 of 17)	intron (NM_001003891, intron 2 of 17)	41408	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
220592	chr8	100903371	100903850	+	0	NA	Intergenic	Intergenic	46961	NM_001135702	7534		NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
206912	chr7	38177671	38179250	+	0	NA	intron (NM_032016, intron 1 of 8)	MIRc|SINE|MIR	215	NM_001363343	83930		NM_032016	ENSG00000010270	STARD3NL	MENTHO	STARD3 N-terminal like	protein-coding
112318	chr19	5896771	5896930	+	0	NA	intron (NM_175614, intron 2 of 3)	intron (NM_175614, intron 2 of 3)	6940	NM_175614	126328		NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7|MC1DN14	NADH:ubiquinone oxidoreductase subunit A11	protein-coding
16870	chr1	155808051	155808350	+	0	NA	intron (NM_001282861, intron 10 of 20)	AluSx|SINE|Alu	-24368	NR_132767	106633816		NR_132767		SCARNA26B	-	small Cajal body-specific RNA 26B	ncRNA
164025	chr3	53234451	53234750	+	0	NA	intron (NM_001064, intron 5 of 13)	intron (NM_001064, intron 5 of 13)	21422	NM_001064	7086		NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding
21645	chr1	206658301	206659130	+	0	NA	Intergenic	Intergenic	23179	NM_001004023	8444		NM_003582	ENSG00000143479	DYRK3	DYRK5|RED|REDK|hYAK3-2	dual specificity tyrosine phosphorylation regulated kinase 3	protein-coding
165423	chr3	98360151	98360250	+	0	NA	Intergenic	L1M1|LINE|L1	6346	NM_001005517	403278		NM_001005517	ENSG00000196098	OR5K4	-	olfactory receptor family 5 subfamily K member 4	protein-coding
133972	chr2	130728911	130730130	+	0	NA	exon (NM_207364, exon 1 of 1)	exon (NM_207364, exon 1 of 1)	450	NM_207364	344561		NM_207364	ENSG00000173302	GPR148	BTR|PGR6	G protein-coupled receptor 148	protein-coding
170176	chr3	183656171	183656530	+	0	NA	intron (NM_001349429, intron 4 of 8)	intron (NM_001349429, intron 4 of 8)	20727	NR_146170	54800		NM_017644	ENSG00000114796	KLHL24	CMH29|DRE1|EBS6|EBSSH|KRIP6	kelch like family member 24	protein-coding
239063	chrY	7294071	7294230	+	0	NA	intron (NR_028062, intron 1 of 7)	AluJo|SINE|Alu	20178	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
59225	chr13	23557871	23558250	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-12310	NM_001204459	55504		NM_018647	ENSG00000127863	TNFRSF19	TAJ|TAJ-alpha|TRADE|TROY	TNF receptor superfamily member 19	protein-coding
68604	chr14	89608071	89608630	+	0	NA	intron (NM_001085471, intron 1 of 6)	AluSc|SINE|Alu	10815	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
39667	chr11	61686671	61686830	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	6359	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
206283	chr7	29969251	29969550	+	0	NA	intron (NM_001145514, intron 1 of 7)	(AC)n|Simple_repeat|Simple_repeat	20401	NM_014766	9805		NM_014766	ENSG00000136193	SCRN1	SES1	secernin 1	protein-coding
93439	chr17	18635701	18636400	+	0	NA	3' UTR (NM_001039397, exon 10 of 10)	3' UTR (NM_001039397, exon 10 of 10)	8377	NM_001039397	254272		NM_001039397	ENSG00000189375	TBC1D28	-	TBC1 domain family member 28	protein-coding
180311	chr5	5494271	5495750	+	0	NA	Intergenic	Intergenic	72333	NM_015325	23379		NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
54628	chr12	92747251	92747350	+	0	NA	intron (NM_001377329, intron 10 of 16)	L1MA4|LINE|L1	44311	NM_001377329	440107		NM_001004330	ENSG00000187510	PLEKHG7	C12orf74	pleckstrin homology and RhoGEF domain containing G7	protein-coding
160543	chr3	30671271	30671630	+	0	NA	intron (NM_001024847, intron 4 of 7)	L2c|LINE|L2	64849	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
15998	chr1	151991451	151991750	+	0	NA	intron (NM_002966, intron 1 of 2)	intron (NM_002966, intron 1 of 2)	2259	NM_002966	6281		NM_002966	ENSG00000197747	S100A10	42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10	S100 calcium binding protein A10	protein-coding
8054	chr1	38835071	38835550	+	0	NA	Intergenic	Intergenic	24462	NM_001271851	64121		NM_022157	ENSG00000116954	RRAGC	GTR2|LNGODS|LNGOS|RAGC|TIB929	Ras related GTP binding C	protein-coding
159888	chr3	16888741	16890130	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	4480	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
229919	chr9	126622071	126622800	+	0	NA	intron (NM_001174147, intron 2 of 7)	intron (NM_001174147, intron 2 of 7)	8507	NM_001174146	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
235352	chrX	44314351	44314750	+	0	NA	intron (NM_025184, intron 1 of 14)	intron (NM_025184, intron 1 of 14)	29122	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
198997	chr6	110941801	110942000	+	0	NA	Intergenic	AluJb|SINE|Alu	-16806	NM_138408	112495		NM_138408	ENSG00000155115	GTF3C6	C6orf51|TFIIIC35|bA397G5.3	general transcription factor IIIC subunit 6	protein-coding
136214	chr2	174580721	174581100	+	0	NA	intron (NM_001375837, intron 3 of 4)	MIRc|SINE|MIR	16894	NM_001375834	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
26251	chr10	14647671	14649550	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-44209	NM_001282697	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
9873	chr1	54309051	54309350	+	0	NA	intron (NM_145716, intron 4 of 17)	intron (NM_145716, intron 4 of 17)	72757	NR_103541	619518		NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA
161646	chr3	43314701	43315230	+	0	NA	intron (NM_017719, intron 3 of 6)	7SLRNA|srpRNA|srpRNA	28425	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
203274	chr6	169722801	169723800	+	0	NA	intron (NM_133325, intron 1 of 11)	intron (NM_133325, intron 1 of 11)	1200	NM_133325	55274		NM_018288	ENSG00000130024	PHF10	BAF45A|SMARCG4|XAP135	PHD finger protein 10	protein-coding
127844	chr2	45571071	45571230	+	0	NA	intron (NM_018079, intron 9 of 20)	L1M4|LINE|L1	40117	NM_018079	55133		NM_018079	ENSG00000068784	SRBD1	-	S1 RNA binding domain 1	protein-coding
102508	chr17	75775701	75780250	+	0	NA	3' UTR (NM_005324, exon 4 of 4)	3' UTR (NM_005324, exon 4 of 4)	1804	NM_005324	3021		NM_005324	ENSG00000132475	H3-3B	BRYLIB2|H3-3A|H3.3B|H3F3B	H3.3 histone B	protein-coding
80713	chr16	3086751	3087280	+	0	NA	Intergenic	Intergenic	12279	NM_001282415	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
199132	chr6	111709701	111710600	+	0	NA	intron (NM_001370529, intron 3 of 11)	intron (NM_001370529, intron 3 of 11)	48981	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
152366	chr22	20497671	20498330	+	0	NA	Intergenic	Intergenic	-2205	NR_033825	84861		NM_032775	ENSG00000099910	KLHL22	KELCHL	kelch like family member 22	protein-coding
109367	chr19	637701	638100	+	0	NA	Intergenic	L1MB7|LINE|L1	-1979	NM_020637	27006		NM_020637	ENSG00000070388	FGF22	-	fibroblast growth factor 22	protein-coding
57196	chr12	121464401	121464950	+	0	NA	intron (NM_001005366, intron 12 of 22)	intron (NM_001005366, intron 12 of 22)	-20323	NR_106957	102465665		NR_106957	ENSG00000284402	MIR7107	hsa-mir-7107	microRNA 7107	ncRNA
5327	chr1	25243901	25244200	+	0	NA	non-coding (NR_135778, exon 4 of 5)	non-coding (NR_135778, exon 4 of 5)	3404	NR_135786	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
239369	chrY	20763871	20764230	+	0	NA	intron (NM_001039567, intron 4 of 6)	L1MD|LINE|L1	7942	NM_001039567	140032		NM_138963	ENSG00000280969	RPS4Y2	RPS4Y2P	ribosomal protein S4 Y-linked 2	protein-coding
34322	chr10	132159401	132160700	+	0	NA	intron (NM_001323090, intron 19 of 23)	intron (NM_001323090, intron 19 of 23)	-26898	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
20142	chr1	192575421	192576300	+	0	NA	promoter-TSS (NM_002922)	promoter-TSS (NM_002922)	87	NM_002922	5996		NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G protein signaling 1	protein-coding
201788	chr6	149980821	149981530	+	0	NA	Intergenic	L1PA16|LINE|L1	17232	NR_133659	80329		NM_025218	ENSG00000111981	ULBP1	N2DL-1|NKG2DL1|RAET1I	UL16 binding protein 1	protein-coding
94221	chr17	28644251	28645810	+	0	NA	exon (NM_001321560, exon 1 of 39)	exon (NM_001321560, exon 1 of 39)	128	NM_001321560	9703		NM_014680	ENSG00000007202	BLTP2	BCOX|BCOX1|CT101|FMP27|Hob|KIAA0100	bridge-like lipid transfer protein family member 2	protein-coding
135704	chr2	168965701	168965900	+	0	NA	intron (NM_003742, intron 17 of 27)	intron (NM_003742, intron 17 of 27)	64509	NM_001081686	57818		NM_021176	ENSG00000152254	G6PC2	IGRP	glucose-6-phosphatase catalytic subunit 2	protein-coding
148236	chr20	63631671	63632550	+	0	NA	Intergenic	AluSx|SINE|Alu	4875	NR_132418	100505771		NR_132417	ENSG00000232442	MHENCR	-	melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489	ncRNA
35740	chr11	2099551	2099850	+	0	NA	Intergenic	Intergenic	34509	NR_030158	619552		NR_030158	ENSG00000207805	MIR483	MIRN483|hsa-mir-483|mir-483	microRNA 483	ncRNA
121875	chr19	48323421	48324230	+	0	NA	Intergenic	L2a|LINE|L2	-1727	NM_001425	2014		NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3 (MAM blood group)	protein-coding
149926	chr21	36250021	36250280	+	0	NA	intron (NM_001320714, intron 21 of 36)	intron (NM_001320714, intron 21 of 36)	-70039	NM_001320446	23515		NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding
236230	chrX	65715951	65716250	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	48446	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
121340	chr19	46785951	46787040	+	0	NA	intron (NM_005628, intron 1 of 7)	intron (NM_005628, intron 1 of 7)	798	NM_001145144	6510		NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding
75983	chr15	70532101	70532930	+	0	NA	Intergenic	Intergenic	-26587	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
191123	chr6	4036771	4036930	+	0	NA	intron (NR_146785, intron 2 of 20)	AluJb|SINE|Alu	15550	NR_146784	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
37652	chr11	22638921	22639300	+	0	NA	Intergenic	Intergenic	-13287	NM_022725	2188		NM_022725	ENSG00000183161	FANCF	FAF	FA complementation group F	protein-coding
208718	chr7	73323921	73324800	+	0	NA	intron (NM_001281450, intron 2 of 6)	CpG	1215	NM_001281451	135892		NM_178125	ENSG00000146755	TRIM50	TRIM50A	tripartite motif containing 50	protein-coding
160270	chr3	25781601	25782050	+	0	NA	intron (NM_001145294, intron 1 of 11)	intron (NM_001145294, intron 1 of 11)	1618	NM_018297	55768		NM_018297	ENSG00000151092	NGLY1	CDDG|CDG1V|PNG-1|PNG1|PNGase	N-glycanase 1	protein-coding
72664	chr15	38534671	38535330	+	0	NA	intron (NM_001128602, intron 2 of 15)	intron (NM_001128602, intron 2 of 15)	29814	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
166802	chr3	122576301	122576750	+	0	NA	Intergenic	Intergenic	-1125	NM_001113523	165631		NM_152615	ENSG00000173200	PARP15	ARTD7|BAL3|pART7	poly(ADP-ribose) polymerase family member 15	protein-coding
70249	chr14	101584301	101584730	+	0	NA	Intergenic	CpG	23164	NM_001362	1735		NM_001362	ENSG00000197406	DIO3	5DIII|D3|DIOIII|TXDI3	iodothyronine deiodinase 3	protein-coding
135603	chr2	168039921	168040180	+	0	NA	intron (NM_013233, intron 14 of 17)	intron (NM_013233, intron 14 of 17)	-98906	NR_131227	105616981		NR_131227	ENSG00000235335	B3GALT1-AS1	-	B3GALT1 antisense RNA 1	ncRNA
228573	chr9	103798771	103798930	+	0	NA	Intergenic	Intergenic	-200859	NR_109803	101928523		NR_109803	ENSG00000285483	LINC03094	lnc-SMC2-1	long intergenic non-protein coding RNA 3094	ncRNA
233373	chr9	137506501	137506700	+	0	NA	intron (NM_001098537, intron 12 of 34)	LTR42|LTR|ERVL	43802	NM_001098537	375775		NM_152286	ENSG00000130653	PNPLA7	C9orf111|NTE-R1|NTEL1	patatin like phospholipase domain containing 7	protein-coding
36891	chr11	10749551	10749850	+	0	NA	Intergenic	L2b|LINE|L2	-1546	NM_001346279	9646		NM_014633	ENSG00000198730	CTR9	SH2BP1|TSBP|p150|p150TSP	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding
36405	chr11	4078201	4079050	+	0	NA	intron (NM_001382568, intron 7 of 11)	AluSq2|SINE|Alu	-16060	NM_001318064	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
106313	chr18	12886521	12886850	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2350	NM_080422	5771		NM_002828	ENSG00000175354	PTPN2	PTN2|PTPT|TC-PTP|TC45|TC48|TCELLPTP|TCPTP	protein tyrosine phosphatase non-receptor type 2	protein-coding
138688	chr2	213083201	213083600	+	0	NA	intron (NM_001371277, intron 3 of 6)	AluSp|SINE|Alu	67037	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
146188	chr20	48761301	48762950	+	0	NA	intron (NM_020820, intron 1 of 39)	MER117|DNA|hAT-Charlie	65874	NM_020820	57580		NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
131485	chr2	96507771	96508700	+	0	NA	promoter-TSS (NR_104346)	promoter-TSS (NR_104346)	-126	NR_104346	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
157530	chr22	45417271	45417430	+	0	NA	intron (NM_015653, intron 2 of 6)	intron (NM_015653, intron 2 of 6)	3657	NM_015653	26150		NM_015653	ENSG00000128408	RIBC2	C22orf11|TRIB	RIB43A domain with coiled-coils 2	protein-coding
193790	chr6	31402201	31404750	+	0	NA	promoter-TSS (NM_000247)	promoter-TSS (NM_000247)	-120	NM_001177519	100507436		NM_000247	ENSG00000204520	MICA	MIC-A|PERB11.1	MHC class I polypeptide-related sequence A	protein-coding
59672	chr13	28717071	28717630	+	0	NA	intron (NM_001347960, intron 2 of 5)	intron (NM_001347960, intron 2 of 5)	1620	NM_181785	283537		NM_181785	ENSG00000139508	SLC46A3	FKSG16	solute carrier family 46 member 3	protein-coding
61114	chr13	48490601	48490800	+	0	NA	intron (NR_147985, intron 11 of 11)	intron (NR_147985, intron 11 of 11)	42380	NM_001352426	1102		NM_001268	ENSG00000136161	RCBTB2	CHC1L|RLG	RCC1 and BTB domain containing protein 2	protein-coding
110842	chr19	2543471	2544080	+	0	NA	intron (NM_052847, intron 3 of 4)	CpG	67648	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
140367	chr2	232838201	232838850	+	0	NA	intron (NM_001103146, intron 22 of 28)	intron (NM_001103146, intron 22 of 28)	-30489	NM_001346122	389084		NM_206895	ENSG00000182600	SNORC	ASCL830|C2orf82|UNQ830	secondary ossification center associated regulator of chondrocyte maturation	protein-coding
213321	chr7	135181271	135181630	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	-10624	NM_001243754	78996		NM_024033	ENSG00000122783	CYREN	C7orf49|CYREN-1|CYREN-2|MRI|MRI-2	cell cycle regulator of NHEJ	protein-coding
212288	chr7	123751921	123752180	+	0	NA	Intergenic	Intergenic	-3047	NM_003941	8976		NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	WASP like actin nucleation promoting factor	protein-coding
174141	chr4	36233301	36233700	+	0	NA	intron (NR_146894, intron 1 of 32)	intron (NR_146894, intron 1 of 32)	10439	NR_146893	116984		NM_015230	ENSG00000047365	ARAP2	CENTD1|PARX	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
90146	chr17	136071	137780	+	0	NA	promoter-TSS (NM_001097610)	promoter-TSS (NM_001097610)	-644	NM_001097610	653486		NM_001097610	ENSG00000268320	SCGB1C2	SCGB1C1	secretoglobin family 1C member 2	protein-coding
192158	chr6	17581401	17581600	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-18802	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
135953	chr2	172078901	172079330	+	0	NA	intron (NM_001322279, intron 7 of 9)	intron (NM_001322279, intron 7 of 9)	-6392	NM_001038493	1745		NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding
87815	chr16	75572271	75572630	+	0	NA	intron (NM_007285, intron 3 of 3)	intron (NM_007285, intron 3 of 3)	6071	NM_007285	11345		NM_007285	ENSG00000034713	GABARAPL2	ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2	GABA type A receptor associated protein like 2	protein-coding
147816	chr20	62703321	62703800	+	0	NA	Intergenic	Intergenic	-5276	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
131618	chr2	96949471	96949630	+	0	NA	intron (NM_001122646, intron 7 of 16)	intron (NM_001122646, intron 7 of 16)	30444	NR_110209	101927053		NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
138415	chr2	205079201	205079400	+	0	NA	intron (NM_205863, intron 4 of 21)	MLT1A1|LTR|ERVL-MaLR	533825	NM_001302769	117583		NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
71466	chr14	105879951	105880650	+	0	NA	Intergenic	Intergenic	-20747	NR_130466	100616422		NR_130466	ENSG00000264781	MIR4537	-	microRNA 4537	ncRNA
36198	chr11	3417951	3418130	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-26125	NR_044999	10821		NR_044999	ENSG00000189398	OR7E12P	HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021	olfactory receptor family 7 subfamily E member 12 pseudogene	pseudo
236384	chrX	71099871	71100280	+	0	NA	intron (NM_005938, intron 1 of 2)	intron (NM_005938, intron 1 of 2)	4224	NM_001170931	4303		NM_005938	ENSG00000184481	FOXO4	AFX|AFX1|MLLT7	forkhead box O4	protein-coding
144869	chr20	36909051	36909150	+	0	NA	intron (NM_001363733, intron 11 of 15)	AluSx|SINE|Alu	32962	NM_080628	140711		NM_080628	ENSG00000101342	TLDC2	C20orf118	TBC/LysM-associated domain containing 2	protein-coding
100926	chr17	64470071	64470530	+	0	NA	intron (NM_001369493, intron 9 of 9)	AluSx1|SINE|Alu	21185	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
163699	chr3	52268921	52269550	+	0	NA	promoter-TSS (NR_029660)	promoter-TSS (NR_029660)	-874	NR_029660	406890		NR_029660	ENSG00000199150	MIRLET7G	LET7G|MIRNLET7G|hsa-let-7g|let-7g	microRNA let-7g	ncRNA
147531	chr20	59384301	59385980	+	0	NA	Intergenic	Intergenic	84529	NM_001302456	1908		NM_000114	ENSG00000124205	EDN3	ET-3|ET3|HSCR4|PPET3|WS4B	endothelin 3	protein-coding
193461	chr6	30511021	30511600	+	0	NA	Intergenic	L1M4a2|LINE|L1	-4956	NR_149088	111082993		NR_149088		LINC02569	TCONS_00011283	long intergenic non-protein coding RNA 2569	ncRNA
41904	chr11	67270971	67272950	+	0	NA	intron (NM_001619, intron 1 of 20)	intron (NM_001619, intron 1 of 20)	5487	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
95694	chr17	38431101	38431300	+	0	NA	intron (NM_001199417, intron 1 of 23).2	intron (NM_001199417, intron 1 of 23).2	2736	NM_001199417	57636		NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
10300	chr1	64854451	64854750	+	0	NA	intron (NM_001321857, intron 11 of 24)	MIR3|SINE|MIR	109525	NM_018211	55225		NM_018211	ENSG00000162437	RAVER2	-	ribonucleoprotein, PTB binding 2	protein-coding
130272	chr2	84871421	84871680	+	0	NA	intron (NM_001307978, intron 1 of 4)	AluSx4|SINE|Alu	9534	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
140861	chr2	237438851	237438950	+	0	NA	Intergenic	Intergenic	-24693	NM_057167	1293		NM_004369	ENSG00000163359	COL6A3	BTHLM1|BTHLM1C|DYT27|UCMD1|UCMD1C	collagen type VI alpha 3 chain	protein-coding
66848	chr14	64971271	64973380	+	0	NA	promoter-TSS (NM_001330182)	promoter-TSS (NM_001330182)	11	NM_198686	376267		NM_198686	ENSG00000139998	RAB15	-	RAB15, member RAS oncogene family	protein-coding
225656	chr9	36402401	36403000	+	0	NA	Intergenic	Intergenic	-1502	NM_194330	152006		NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding
161679	chr3	43369401	43369600	+	0	NA	intron (NM_001346463, intron 12 of 12)	intron (NM_001346463, intron 12 of 12)	-17538	NR_046757	100873954		NR_046757		SNRK-AS1	-	SNRK antisense RNA 1	ncRNA
136800	chr2	181607971	181608330	+	0	NA	intron (NR_027690, intron 1 of 11)	AluJo|SINE|Alu	48955	NM_201548	375298		NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding
195257	chr6	36425621	36426150	+	0	NA	intron (NM_152990, intron 3 of 4)	intron (NM_152990, intron 3 of 4)	-16882	NM_001286580	222658		NM_173562	ENSG00000112078	KCTD20	C6orf69|dJ108K11.3	potassium channel tetramerization domain containing 20	protein-coding
86564	chr16	67202871	67203230	+	0	NA	promoter-TSS (NR_029887)	promoter-TSS (NR_029887)	-655	NR_029887	442901		NR_029887	ENSG00000207948	MIR328	MIRN328|hsa-mir-328|mir-328	microRNA 328	ncRNA
213827	chr7	141564371	141564630	+	0	NA	intron (NM_018238, intron 2 of 15)	THE1C|LTR|ERVL-MaLR	13090	NM_001364948	55750		NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
237405	chrX	119603921	119604180	+	0	NA	intron (NR_163972, intron 1 of 3)	MIRc|SINE|MIR	2374	NM_017544	55922		NM_017544	ENSG00000186416	NKRF	ITBA4|NRF	NFKB repressing factor	protein-coding
125150	chr2	10011801	10012700	+	0	NA	Intergenic	CpG	31151	NR_135558	101929882		NR_135558		KLF11-DT	-	KLF11 divergent transcript	ncRNA
47238	chr12	996171	996330	+	0	NA	intron (NR_027946, intron 1 of 18)	(T)n|Simple_repeat|Simple_repeat	5027	NR_027948	23085		NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding
170092	chr3	183016921	183017500	+	0	NA	intron (NR_120639, intron 15 of 15)	intron (NR_120639, intron 15 of 15)	-31292	NM_001308101	54165		NM_020640	ENSG00000043093	DCUN1D1	DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3	defective in cullin neddylation 1 domain containing 1	protein-coding
152730	chr22	21682151	21682650	+	0	NA	intron (NM_148175, intron 7 of 20)	intron (NM_148175, intron 7 of 20)	16388	NM_014337	23759		NM_014337	ENSG00000100023	PPIL2	CYC4|CYP60|Cyp-60|UBOX7|hCyP-60	peptidylprolyl isomerase like 2	protein-coding
188704	chr5	157306401	157307730	+	0	NA	intron (NM_014376, intron 8 of 30)	intron (NM_014376, intron 8 of 30)	37741	NM_014376	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
109955	chr19	1379201	1380330	+	0	NA	Intergenic	Intergenic	-4142	NM_024407	374291		NM_024407	ENSG00000115286	NDUFS7	CI-20|CI-20KD|MC1DN3|MY017|PSST	NADH:ubiquinone oxidoreductase core subunit S7	protein-coding
206698	chr7	36509821	36510350	+	0	NA	Intergenic	Tigger17a|DNA|TcMar-Tigger	90035	NR_046764	100874264		NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
2499	chr1	9690821	9691350	+	0	NA	promoter-TSS (NM_001350235)	promoter-TSS (NM_001350235)	-382	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
225906	chr9	39875651	39876580	+	0	NA	TTS (NR_126049)	TTS (NR_126049)	-1549	NR_003670	654466		NM_001039113	ENSG00000291181	FGF7P3	KGFLP2	fibroblast growth factor 7 pseudogene 3	pseudo
46592	chr11	128520371	128521470	+	0	NA	intron (NM_001143820, intron 3 of 9)	intron (NM_001143820, intron 3 of 9)	1390	NM_001330451	2113		NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
24417	chr1	243421501	243422140	+	0	NA	intron (NM_001350251, intron 18 of 20).2	intron (NM_001350251, intron 18 of 20).2	75644	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
66141	chr14	60247271	60248400	+	0	NA	intron (NM_177952, intron 1 of 5)	intron (NM_177952, intron 1 of 5)	-1386	NM_177951	5494		NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding
142731	chr20	10217421	10217930	+	0	NA	intron (NR_040710, intron 1 of 4)	CpG	-1155	NM_001322910	6616		NM_003081	ENSG00000132639	SNAP25	CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2	synaptosome associated protein 25	protein-coding
196548	chr6	44065451	44065750	+	0	NA	intron (NR_125864, intron 1 of 4)	intron (NR_125864, intron 1 of 4)	9052	NR_125864	101929705		NR_125864	ENSG00000237686	SCIRT	DATOC-1	stem cell inhibitory RNA transcript	ncRNA
3749	chr1	16647171	16648500	+	0	NA	non-coding (NR_027504, exon 7 of 14)	non-coding (NR_027504, exon 7 of 14)	2261	NR_027504	11209		NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo
200974	chr6	139343171	139343330	+	0	NA	Intergenic	L1PBa|LINE|L1	30963	NM_001168389	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
215187	chr7	155737201	155737600	+	0	NA	intron (NM_053043, intron 9 of 17)	intron (NM_053043, intron 9 of 17)	71763	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
109605	chr19	934451	934850	+	0	NA	intron (NM_005224, intron 3 of 8)	intron (NM_005224, intron 3 of 8)	8615	NM_005224	1820		NM_005224	ENSG00000116017	ARID3A	BRIGHT|DRIL1|DRIL3|E2FBP1	AT-rich interaction domain 3A	protein-coding
170149	chr3	183513071	183514180	+	0	NA	intron (NM_130446, intron 2 of 6)	intron (NM_130446, intron 2 of 6)	-35110	NR_046687	100874019		NR_046687	ENSG00000242522	KLHL6-AS1	-	KLHL6 antisense RNA 1	ncRNA
231393	chr9	130806321	130806580	+	0	NA	intron (NM_007313, intron 1 of 10)	intron (NM_007313, intron 1 of 10)	-28804	NM_005157	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
191770	chr6	14117151	14118850	+	0	NA	exon (NM_004233, exon 2 of 5)	exon (NM_004233, exon 2 of 5)	228	NM_001040280	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
108394	chr18	69888371	69888530	+	0	NA	intron (NM_006566, intron 4 of 6)	AluJr|SINE|Alu	59423	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
37917	chr11	34156301	34156500	+	0	NA	intron (NM_145804, intron 14 of 16)	intron (NM_145804, intron 14 of 16)	50771	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
47989	chr12	6910651	6910750	+	0	NA	intron (NM_006992, intron 6 of 6)	AluJb|SINE|Alu	-3880	NM_001975	2026		NM_001975	ENSG00000111674	ENO2	HEL-S-279|NSE	enolase 2	protein-coding
150860	chr21	44086171	44087000	+	0	NA	intron (NM_003274, intron 15 of 22)	intron (NM_003274, intron 15 of 22)	12261	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
109861	chr19	1231521	1231780	+	0	NA	intron (NM_152769, intron 8 of 8)	intron (NM_152769, intron 8 of 8)	6355	NM_152769	255057		NM_152769	ENSG00000099625	CBARP	BARP|C19orf26|DOS	CACN subunit beta associated regulatory protein	protein-coding
185688	chr5	131798521	131799050	+	0	NA	Intergenic	AluJb|SINE|Alu	-1768	NM_001346114	96459		NM_133372	ENSG00000217128	FNIP1	IMD93	folliculin interacting protein 1	protein-coding
178379	chr4	146523871	146524030	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1979	NM_032128	84068		NM_032128	ENSG00000120519	SLC10A7	C4orf13|P7|SSASKS	solute carrier family 10 member 7	protein-coding
188603	chr5	157186471	157187730	+	0	NA	intron (NM_005546, intron 1 of 16)	L2c|LINE|L2	6260	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
5375	chr1	25427521	25427780	+	0	NA	Intergenic	Intergenic	-3208	NM_001282564	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
155322	chr22	38212571	38213000	+	0	NA	intron (NM_001161573, intron 1 of 2)	intron (NM_001161573, intron 1 of 2)	9765	NM_001161573	23764		NM_012323	ENSG00000185022	MAFF	U-MAF|hMafF	MAF bZIP transcription factor F	protein-coding
9523	chr1	51444101	51444600	+	0	NA	intron (NM_001981, intron 11 of 24)	intron (NM_001981, intron 11 of 24)	-22255	NM_001159969	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
158165	chr22	50207621	50208100	+	0	NA	intron (NM_031454, intron 2 of 8)	intron (NM_031454, intron 2 of 8)	6849	NM_031454	83642		NM_031454	ENSG00000073169	SELENOO	SELO	selenoprotein O	protein-coding
140955	chr2	237859421	237859950	+	0	NA	promoter-TSS (NM_001308353)	promoter-TSS (NM_001308353)	62	NM_005855	10267		NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding
111434	chr19	3803251	3803350	+	0	NA	TTS (NM_015174)	TTS (NM_015174)	-1501	NM_002378	4145		NM_002378	ENSG00000007264	MATK	CHK|CTK|HHYLTK|HYL|HYLTK|Lsk	megakaryocyte-associated tyrosine kinase	protein-coding
123895	chr19	55330271	55330630	+	0	NA	Intergenic	L2a|LINE|L2	-5109	NM_001282011	284417		NM_001085488	ENSG00000180061	TMEM150B	DRAM3|TMEM224|TTN2	transmembrane protein 150B	protein-coding
168777	chr3	151306371	151306530	+	0	NA	intron (NM_023915, intron 1 of 2)	intron (NM_023915, intron 1 of 2)	10370	NM_023915	53836		NM_023915	ENSG00000138271	GPR87	FKSG78|GPR95|KPG_002	G protein-coupled receptor 87	protein-coding
181252	chr5	39209731	39210650	+	0	NA	intron (NM_018594, intron 1 of 18)	intron (NM_018594, intron 1 of 18)	9373	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
107708	chr18	49677921	49678180	+	0	NA	Intergenic	Intergenic	115993	NM_006033	9388		NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding
79338	chr16	583151	583450	+	0	NA	exon (NM_148920, exon 10 of 10)	exon (NM_148920, exon 10 of 10)	-6057	NM_001172663	57799		NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding
162021	chr3	46536821	46537080	+	0	NA	intron (NM_024512, intron 4 of 8)	intron (NM_024512, intron 4 of 8)	-20448	NR_073385	83598		NM_031441	ENSG00000268324	LRRC2-AS1	LUZP3|LUZP3P|LUZPP1	LRRC2 antisense RNA 1	ncRNA
2009	chr1	6783071	6783630	+	0	NA	TTS (NR_149049)	TTS (NR_149049)	1630	NR_149049	110841581		NR_149049		CAMTA1-DT	lncCAMTA1	CAMTA1 divergent transcript	ncRNA
233046	chr9	137051171	137052230	+	0	NA	intron (NM_203468, intron 2 of 8)	intron (NM_203468, intron 2 of 8)	2361	NM_001246	954		NM_001246	ENSG00000054179	ENTPD2	CD39L1|NTPDase-2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding
222448	chr8	137411021	137411100	+	0	NA	intron (NR_125428, intron 1 of 2)	HERVH-int|LTR|ERV1	2528	NR_125428	101927915		NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA
58459	chr12	132095701	132096000	+	0	NA	intron (NR_003290, intron 3 of 9)	LTR10A|LTR|ERV1	11567	NR_003290	347918		NM_182613	ENSG00000291171	EP400P1	EP400NL	EP400 pseudogene 1	pseudo
188953	chr5	160496401	160496600	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	11148	NR_029701	406938		NR_029701	ENSG00000283733	MIR146A	MIRN146|MIRN146A|miR-146a|miRNA146A	microRNA 146a	ncRNA
184013	chr5	91226071	91226430	+	0	NA	Intergenic	AluJb|SINE|Alu	88152	NR_103549	100505994		NR_103548	ENSG00000248323	LUCAT1	SCAL1|SCAT5	lung cancer associated transcript 1	ncRNA
62503	chr13	99435951	99436050	+	0	NA	Intergenic	Intergenic	63306	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
185415	chr5	129905321	129905750	+	0	NA	exon (NM_175856, exon 1 of 3)	exon (NM_175856, exon 1 of 3)	1070	NM_175856	337876		NM_175856	ENSG00000198108	CHSY3	CHSY2|CSS3	chondroitin sulfate synthase 3	protein-coding
226055	chr9	61660051	61660430	+	0	NA	Intergenic	Intergenic	-193844	NR_027421	100132948		NM_001024942	ENSG00000231527	FAM27C	FAM27A|FAM27A1|FAM27A3|bA7G23.5	family with sequence similarity 27 member C	ncRNA
216335	chr8	13276271	13276780	+	0	NA	promoter-TSS (NM_001316668).2	promoter-TSS (NM_001316668).2	-4	NM_001316668	10395		NM_006094	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding
46261	chr11	124754021	124754280	+	0	NA	intron (NM_138961, intron 6 of 6)	intron (NM_138961, intron 6 of 6)	-1895	NM_014312	23584		NM_014312	ENSG00000019102	VSIG2	2210413P10Rik|CTH|CTXL	V-set and immunoglobulin domain containing 2	protein-coding
187398	chr5	141888951	141889250	+	0	NA	Intergenic	MER31-int|LTR|ERV1	7595	NR_033244	729080		NR_033244		LOC729080	-	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo
140605	chr2	233404301	233404800	+	0	NA	intron (NM_003648, intron 2 of 28)	intron (NM_003648, intron 2 of 28)	-14662	NM_001377259	8527		NM_003648	ENSG00000077044	DGKD	DGK-delta|DGKdelta|dgkd-2	diacylglycerol kinase delta	protein-coding
61535	chr13	60254121	60254380	+	0	NA	intron (NR_047022, intron 1 of 2)	L1PA6|LINE|L1	13854	NR_047022	100874169		NR_047022		LINC00434	-	long intergenic non-protein coding RNA 434	ncRNA
96737	chr17	41682901	41683300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5785	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
29030	chr10	65501151	65501450	+	0	NA	Intergenic	Intergenic	-70125	NR_120647	101928913		NR_120647		LINC01515	-	long intergenic non-protein coding RNA 1515	ncRNA
177225	chr4	108531721	108531980	+	0	NA	Intergenic	Intergenic	-25383	NR_134679	101929621		NR_134679		LOC101929621	-	uncharacterized LOC101929621	ncRNA
88676	chr16	85688421	85689680	+	0	NA	promoter-TSS (NM_016095)	promoter-TSS (NM_016095)	-96	NM_016095	51659		NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding
78563	chr15	93017951	93018050	+	0	NA	intron (NM_001271, intron 37 of 38)	intron (NM_001271, intron 37 of 38)	55156	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
138293	chr2	203715751	203716250	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	9361	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
51471	chr12	52063771	52063930	+	0	NA	Intergenic	Intergenic	-6124	NM_021934	60673		NM_021934	ENSG00000123395	ATG101	C12orf44	autophagy related 101	protein-coding
55479	chr12	104718101	104718830	+	0	NA	intron (NM_018413, intron 2 of 2)	MIRb|SINE|MIR	126832	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
201294	chr6	144335371	144335530	+	0	NA	intron (NM_007124, intron 1 of 73)	intron (NM_007124, intron 1 of 73)	43713	NM_007124	7402		NM_007124	ENSG00000152818	UTRN	DMDL|DRP|DRP1	utrophin	protein-coding
43545	chr11	82908001	82908400	+	0	NA	intron (NM_001363481, intron 1 of 4)	L2a|LINE|L2	-6460	NM_001319214	5547		NM_005040	ENSG00000137509	PRCP	HUMPCP|PCP	prolylcarboxypeptidase	protein-coding
15064	chr1	148448121	148448380	+	0	NA	intron (NR_027468, intron 1 of 4)	(TCTA)n|Simple_repeat|Simple_repeat	11670	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
180817	chr5	32438121	32438580	+	0	NA	intron (NR_144318, intron 2 of 18)	AluSp|SINE|Alu	6390	NM_016107	51663		NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding
54446	chr12	91836371	91836530	+	0	NA	Intergenic	MER57B2|LTR|ERV1	305263	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
211410	chr7	105038221	105039930	+	0	NA	intron (NM_182931, intron 2 of 26)	intron (NM_182931, intron 2 of 26)	24870	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
85656	chr16	56200371	56200900	+	0	NA	intron (NM_020988, intron 2 of 8)	MIRb|SINE|MIR	-6110	NR_026889	26077		NR_026889	ENSG00000261439	GNAO1-AS1	DKFZP434H168	GNAO1 antisense RNA 1	ncRNA
30823	chr10	86364951	86365250	+	0	NA	intron (NM_017551, intron 1 of 15)	CpG-3093	1695	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
38240	chr11	36469151	36469450	+	0	NA	Intergenic	LTR50|LTR|ERVL	40972	NM_145803	7189		NM_004620	ENSG00000175104	TRAF6	MGC:3310|RNF85	TNF receptor associated factor 6	protein-coding
212693	chr7	129768971	129769330	+	0	NA	Intergenic	Intergenic	1342	NR_029614	406958		NR_029614	ENSG00000207990	MIR182	MIRN182|miRNA182|mir-182	microRNA 182	ncRNA
142959	chr20	19583871	19584030	+	0	NA	intron (NM_020689, intron 4 of 16)	intron (NM_020689, intron 4 of 16)	-174308	NM_001378238	54453		NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding
178073	chr4	140095771	140096800	+	0	NA	intron (NM_018717, intron 1 of 4)	intron (NM_018717, intron 1 of 4)	-31730	NR_147610	101927516		NR_147610		LOC101927516	-	uncharacterized LOC101927516	ncRNA
82798	chr16	21465851	21465950	+	0	NA	intron (NR_027155, intron 11 of 28)	AluY|SINE|Alu	-31445	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
19416	chr1	174179571	174179730	+	0	NA	intron (NM_001366447, intron 1 of 20)	Charlie1a|DNA|hAT-Charlie	20130	NM_001366448	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
30992	chr10	88116921	88117630	+	0	NA	Intergenic	Intergenic	253650	NM_000314	5728		NM_000314	ENSG00000171862	PTEN	10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding
193338	chr6	30206451	30206550	+	0	NA	intron (NM_003449, intron 1 of 9).3	intron (NM_003449, intron 1 of 9).3	6906	NM_003449	7726		NM_003449	ENSG00000234127	TRIM26	AFP|RNF95|ZNF173	tripartite motif containing 26	protein-coding
128457	chr2	55619571	55619730	+	0	NA	Intergenic	L1ME4b|LINE|L1	-2028	NM_001282850	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
139101	chr2	218895451	218895550	+	0	NA	Intergenic	Intergenic	14648	NM_025216	80326		NM_025216	ENSG00000135925	WNT10A	ECTD16|OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding
26771	chr10	22872001	22872200	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-55924	NM_001282747	219681		NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1|VAC8	armadillo repeat containing 3	protein-coding
103226	chr17	77490201	77491030	+	0	NA	intron (NM_001293697, intron 5 of 9)	intron (NM_001293697, intron 5 of 9)	14980	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
218480	chr8	51885151	51885450	+	0	NA	intron (NM_052937, intron 1 of 5)	intron (NM_052937, intron 1 of 5)	13736	NM_001363193	115294		NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
83050	chr16	22327851	22327950	+	0	NA	intron (NM_018119, intron 18 of 20).2	intron (NM_018119, intron 18 of 20).2	30491	NM_001258034	55718		NM_018119	ENSG00000058600	POLR3E	C37|RPC5|SIN	RNA polymerase III subunit E	protein-coding
142609	chr20	5594321	5594780	+	0	NA	intron (NM_019593, intron 3 of 19)	AluY|SINE|Alu	16456	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
184319	chr5	96923651	96924630	+	0	NA	Intergenic	(ATGTGTC)n|Simple_repeat|Simple_repeat	-11940	NM_005575	4012		NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding
71280	chr14	105253771	105253930	+	0	NA	intron (NM_001242788, intron 3 of 16)	intron (NM_001242788, intron 3 of 16)	-4446	NM_001242789	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
17344	chr1	156485871	156486530	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	4487	NM_001271629	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
131992	chr2	100554571	100555230	+	0	NA	Intergenic	Intergenic	-8093	NM_024065	79031		NM_024065	ENSG00000115539	PDCL3	HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1	phosducin like 3	protein-coding
205065	chr7	6615101	6616330	+	0	NA	5' UTR (NM_017560, exon 1 of 3)	5' UTR (NM_017560, exon 1 of 3)	105	NM_001353546	54753		NM_017560	ENSG00000236609	ZNF853	-	zinc finger protein 853	protein-coding
187366	chr5	141826201	141826430	+	0	NA	Intergenic	Intergenic	39887	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
204463	chr7	4683451	4683630	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	1245	NM_001037165	221937		NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
196989	chr6	53287671	53288030	+	0	NA	intron (NM_001242830, intron 3 of 6)	intron (NM_001242830, intron 3 of 6)	10857	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
6489	chr1	28373221	28373480	+	0	NA	intron (NM_001350158, intron 1 of 14)	AluSq2|SINE|Alu	3610	NM_001350158	65979		NM_023923	ENSG00000204138	PHACTR4	PPP1R124	phosphatase and actin regulator 4	protein-coding
4287	chr1	19811221	19811580	+	0	NA	Intergenic	Intergenic	3883	NM_019062	54546		NM_019062	ENSG00000178828	RNF186	-	ring finger protein 186	protein-coding
199964	chr6	127954721	127954980	+	0	NA	Intergenic	Charlie10b|DNA|hAT-Charlie	-36219	NM_001164687	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
60252	chr13	40587721	40588430	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	78566	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
213545	chr7	139099401	139099700	+	0	NA	intron (NM_020119, intron 1 of 12)	L1MB7|LINE|L1	10170	NM_001363491	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
212794	chr7	130153601	130153830	+	0	NA	Intergenic	Intergenic	11984	NR_149034	100128325		NR_149033	ENSG00000229196	LINC03008	-	long intergenic non-protein coding RNA 3008	ncRNA
231142	chr9	129861021	129861700	+	0	NA	intron (NM_001110303, intron 7 of 25)	intron (NM_001110303, intron 7 of 25)	-8245	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
206666	chr7	36312251	36312850	+	0	NA	Intergenic	Intergenic	54690	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
30781	chr10	84351921	84352950	+	0	NA	intron (NM_001284241, intron 1 of 2)	intron (NM_001284241, intron 1 of 2)	23846	NM_001351292	54462		NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding
69511	chr14	96027321	96027650	+	0	NA	Intergenic	Intergenic	-11839	NM_001282464	56967		NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
106160	chr18	9922351	9922850	+	0	NA	intron (NM_194434, intron 1 of 5)	intron (NM_194434, intron 1 of 5)	8584	NM_194434	9218		NM_003574	ENSG00000101558	VAPA	VAMP-A|VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
34092	chr10	125160951	125161900	+	0	NA	promoter-TSS (NM_001290214)	promoter-TSS (NM_001290214)	-395	NM_001083914	1488		NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding
200038	chr6	129709551	129710480	+	0	NA	intron (NM_033515, intron 1 of 14)	intron (NM_033515, intron 1 of 14)	162	NM_033515	93663		NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding
26948	chr10	26540751	26540850	+	0	NA	intron (NM_019043, intron 10 of 14)	intron (NM_019043, intron 10 of 14)	38507	NR_134472	101929117		NR_134472		LINC03028	-	long intergenic non-protein coding RNA 3028	ncRNA
101097	chr17	64970951	64971380	+	0	NA	intron (NR_026903, intron 4 of 4)	AluJo|SINE|Alu	4420	NR_026903	201283		NM_153032	ENSG00000291140	AMZ2P1	-	AMZ2 pseudogene 1	pseudo
6258	chr1	27568201	27569630	+	0	NA	intron (NM_001029882, intron 1 of 6)	CpG	34579	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
231099	chr9	129802671	129803900	+	0	NA	exon (NM_014506, exon 1 of 5)	exon (NM_014506, exon 1 of 5)	101	NM_001317894	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
176632	chr4	99841201	99841400	+	0	NA	intron (NM_014395, intron 3 of 8)	intron (NM_014395, intron 3 of 8)	24473	NM_014395	27071		NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
27579	chr10	32371771	32371930	+	0	NA	intron (NR_104163, intron 1 of 1)	AluSx|SINE|Alu	6919	NR_168508	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
220747	chr8	102242721	102243080	+	0	NA	intron (NR_125415, intron 1 of 2)	LTR102_Mam|LTR|ERVL	3449	NR_125415	101927221		NR_125415		UBR5-DT	UBR5-AS1	UBR5 divergent transcript	ncRNA
172145	chr4	1200021	1200700	+	0	NA	intron (NR_024569, intron 3 of 3)	intron (NR_024569, intron 3 of 3)	8602	NM_001199021	10417		NM_012445	ENSG00000159674	SPON2	DIL-1|DIL1|M-SPONDIN|MINDIN	spondin 2	protein-coding
37725	chr11	31368571	31369000	+	0	NA	intron (NM_181807, intron 1 of 8)	intron (NM_181807, intron 1 of 8)	954	NM_001367979	341019		NM_020869	ENSG00000170959	DCDC1	DCDC5	doublecortin domain containing 1	protein-coding
60434	chr13	40997621	40998400	+	0	NA	intron (NM_001370329, intron 1 of 9)	AluJb|SINE|Alu	-15111	NM_001370331	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
163970	chr3	53040501	53041380	+	0	NA	intron (NM_016329, intron 1 of 20)	AluJb|SINE|Alu	5133	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
158504	chr3	3119271	3119780	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-7415	NR_159938	51095		NM_016000	ENSG00000072756	TRNT1	CCA1|CGI-47|MtCCA|RPEM|SIFD	tRNA nucleotidyl transferase 1	protein-coding
182530	chr5	65585351	65585450	+	0	NA	intron (NM_001278926, intron 10 of 11)	intron (NM_001278926, intron 10 of 11)	22104	NM_015342	23398		NM_015342	ENSG00000113593	PPWD1	-	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding
178397	chr4	147617121	147618600	+	0	NA	5' UTR (NM_018241, exon 1 of 10)	5' UTR (NM_018241, exon 1 of 10)	463	NM_018241	55751		NM_018241	ENSG00000164168	TMEM184C	SLC51C3|TMEM34	transmembrane protein 184C	protein-coding
81198	chr16	4491201	4491400	+	0	NA	intron (NM_001286269, intron 2 of 6)	intron (NM_001286269, intron 2 of 6)	-4519	NM_001286270	3163		NM_002134	ENSG00000103415	HMOX2	HO-2	heme oxygenase 2	protein-coding
230144	chr9	127741501	127742330	+	0	NA	exon (NM_001142534, exon 7 of 10)	exon (NM_001142534, exon 7 of 10)	-6621	NM_001134430	27433		NM_130459	ENSG00000160404	TOR2A	TORP1	torsin family 2 member A	protein-coding
195814	chr6	41198201	41198400	+	0	NA	exon (NM_024807, exon 2 of 5)	exon (NM_024807, exon 2 of 5)	2849	NM_024807	79865		NM_024807	ENSG00000112195	TREML2	C6orf76|TLT-2|TLT2|dJ238O23.1	triggering receptor expressed on myeloid cells like 2	protein-coding
78499	chr15	92925751	92925850	+	0	NA	intron (NM_001042572, intron 3 of 12)	intron (NM_001042572, intron 3 of 12)	21401	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
192483	chr6	24950671	24951150	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-14950	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
57013	chr12	120587271	120587630	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-6048	NM_015918	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
208540	chr7	70681701	70682530	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-450029	NM_022479	64409		NM_022479	ENSG00000185274	GALNT17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding
118041	chr19	34235501	34235700	+	0	NA	Intergenic	L1ME3A|LINE|L1	-18954	NM_014686	9710		NM_014686	ENSG00000166398	GARRE1	KIAA0355|MiniBAR	granule associated Rac and RHOG effector 1	protein-coding
126815	chr2	30465071	30465480	+	0	NA	intron (NM_182551, intron 2 of 6)	MLT1D|LTR|ERVL-MaLR	18029	NM_182551	253558		NM_182551	ENSG00000172954	LCLAT1	1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LPLAT6|LYCAT|UNQ1849	lysocardiolipin acyltransferase 1	protein-coding
168799	chr3	152197571	152197730	+	0	NA	intron (NR_136178, intron 1 of 2)	intron (NR_136178, intron 1 of 2)	7779	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
87540	chr16	71908621	71908880	+	0	NA	intron (NM_001270979, intron 1 of 5)	L1MEf|LINE|L1	13219	NM_001270977	9798		NM_014761	ENSG00000182149	IST1	CHMP8|OLC1	IST1 factor associated with ESCRT-III	protein-coding
227410	chr9	89556051	89556880	+	0	NA	Intergenic	Intergenic	-48547	NM_006705	10912		NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding
185326	chr5	126793751	126794400	+	0	NA	intron (NR_134488, intron 1 of 11)	AluSx|SINE|Alu	16939	NM_005573	4001		NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB|MCPH26	lamin B1	protein-coding
97779	chr17	44636751	44636850	+	0	NA	Intergenic	Intergenic	13549	NR_110661	101927017		NR_110661	ENSG00000266979	LINC01180	-	long intergenic non-protein coding RNA 1180	ncRNA
7947	chr1	37552071	37553080	+	0	NA	intron (NM_024700, intron 2 of 3)	(CA)n|Simple_repeat|Simple_repeat	1718	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
52210	chr12	54376021	54376680	+	0	NA	intron (NM_001290002, intron 3 of 8)	intron (NM_001290002, intron 3 of 8)	8383	NM_001290001	25946		NM_015481	ENSG00000161642	ZNF385A	HZF|RZF|ZFP385|ZNF385	zinc finger protein 385A	protein-coding
133788	chr2	127774071	127774430	+	0	NA	intron (NM_001006623, intron 1 of 7)	AluSx1|SINE|Alu	36921	NM_001006623	55339		NM_018383	ENSG00000136709	WDR33	NET14|WDC146	WD repeat domain 33	protein-coding
207025	chr7	38427501	38427730	+	0	NA	intron (NM_139316, intron 14 of 19)	(TTG)n|Simple_repeat|Simple_repeat	86038	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
2235	chr1	8865601	8865800	+	0	NA	TTS (NR_106786)	TTS (NR_106786)	890	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
2383	chr1	9420771	9421330	+	0	NA	Intergenic	Intergenic	7866	NR_104623	100506022		NR_104622	ENSG00000284693	LINC02606	-	long intergenic non-protein coding RNA 2606	ncRNA
198690	chr6	108076751	108077050	+	0	NA	Intergenic	AluSx|SINE|Alu	-2159	NM_014028	28962		NM_014028	ENSG00000081087	OSTM1	GIPN|GL|HSPC019|OPTB5	osteoclastogenesis associated transmembrane protein 1	protein-coding
81405	chr16	8566421	8566850	+	0	NA	intron (NR_110736, intron 2 of 3)	L2a|LINE|L2	23203	NR_110736	283953		NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding
85899	chr16	57067551	57068150	+	0	NA	intron (NM_001384955, intron 35 of 47)	intron (NM_001384955, intron 35 of 47)	-24733	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
140348	chr2	232632321	232632580	+	0	NA	intron (NM_001243252, intron 1 of 3)	intron (NM_001243252, intron 1 of 3)	-1154	NM_001308395	80303		NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding
81891	chr16	11698171	11698700	+	0	NA	intron (NR_136674, intron 4 of 8)	intron (NR_136674, intron 4 of 8)	29980	NM_003498	8303		NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding
13342	chr1	113808251	113809300	+	0	NA	intron (NM_018364, intron 1 of 6)	L1MD2|LINE|L1	3701	NR_130896	54665		NM_018364	ENSG00000081019	RSBN1	KDM9|ROSBIN	round spermatid basic protein 1	protein-coding
82433	chr16	16316751	16317700	+	0	NA	promoter-TSS (NR_036447)	promoter-TSS (NR_036447)	-384	NR_036447	131696449		NR_036447		LOC131696449	PKD1P1-NPIPA5L	PKD1P1-NPIPA5L readthrough	ncRNA
20218	chr1	193150421	193150500	+	0	NA	intron (NM_024529, intron 9 of 16)	intron (NM_024529, intron 9 of 16)	13957	NR_031691	100302163		NR_031691	ENSG00000221680	MIR1278	MIRN1278|hsa-mir-1278|mir-1278	microRNA 1278	ncRNA
146453	chr20	49691971	49692130	+	0	NA	intron (NM_004776, intron 1 of 8)	intron (NM_004776, intron 1 of 8)	21828	NM_004776	9334		NM_004776	ENSG00000158470	B4GALT5	B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V	beta-1,4-galactosyltransferase 5	protein-coding
151256	chr21	45321471	45321630	+	0	NA	Intergenic	Intergenic	20440	NR_103811	388830		NR_103811	ENSG00000237664	LINC00316	C21orf111|NCRNA00316|PRED59	long intergenic non-protein coding RNA 316	ncRNA
4194	chr1	19440601	19440800	+	0	NA	intron (NM_001313932, intron 1 of 4)	intron (NM_001313932, intron 1 of 4)	43595	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
47055	chr12	546721	547380	+	0	NA	intron (NM_173593, intron 7 of 19)	intron (NM_173593, intron 7 of 19)	39436	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
340	chr1	999801	1000400	+	0	NA	promoter-TSS (NM_021170)	promoter-TSS (NM_021170)	-3	NM_001142467	57801		NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding
7379	chr1	32883771	32884200	+	0	NA	Intergenic	Intergenic	-2506	NM_002143	3208		NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding
161697	chr3	43501771	43502080	+	0	NA	intron (NM_001346467, intron 12 of 13)	intron (NM_001346467, intron 12 of 13)	120001	NM_001346467	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
200292	chr6	132813901	132815230	+	0	NA	promoter-TSS (NM_001016)	promoter-TSS (NM_001016)	-4	NM_001016	6206		NM_001016	ENSG00000112306	RPS12	S12|eS12	ribosomal protein S12	protein-coding
19175	chr1	171840951	171842300	+	0	NA	non-coding (NR_146559, exon 1 of 21)	non-coding (NR_146559, exon 1 of 21)	127	NM_001350204	26052		NM_015569	ENSG00000197959	DNM3	Dyna III	dynamin 3	protein-coding
144656	chr20	36092071	36092850	+	0	NA	promoter-TSS (NM_001258329)	promoter-TSS (NM_001258329)	-250	NM_001258330	2036		NM_012156	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1 like 1	protein-coding
136678	chr2	181104321	181105080	+	0	NA	Intergenic	Intergenic	-19137	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
148178	chr20	63541101	63541330	+	0	NA	exon (NM_080823, exon 7 of 8)	exon (NM_080823, exon 7 of 8)	-3839	NM_005975	5753		NM_005975	ENSG00000101213	PTK6	BRK	protein tyrosine kinase 6	protein-coding
229780	chr9	125231321	125231630	+	0	NA	intron (NM_001174153, intron 6 of 7)	MIR|SINE|MIR	9868	NM_005347	3309		NM_005347	ENSG00000044574	HSPA5	BIP|GRP78|HEL-S-89n	heat shock protein family A (Hsp70) member 5	protein-coding
198946	chr6	110687201	110687880	+	0	NA	intron (NM_015076, intron 2 of 12)	intron (NM_015076, intron 2 of 12)	-127081	NM_001287215	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
27320	chr10	30506151	30506450	+	0	NA	Intergenic	AluJb|SINE|Alu	71654	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
226583	chr9	73023021	73023480	+	0	NA	Intergenic	Intergenic	-70197	NM_000689	216		NM_000689	ENSG00000165092	ALDH1A1	ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1	aldehyde dehydrogenase 1 family member A1	protein-coding
203618	chr7	951321	952450	+	0	NA	intron (NM_001284308, intron 1 of 10)	FRAM|SINE|Alu	2795	NM_006869	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
119757	chr19	41286771	41287530	+	0	NA	intron (NM_144732, intron 7 of 14)	AluSg|SINE|Alu	22069	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
132125	chr2	101694521	101695280	+	0	NA	Intergenic	MIRc|SINE|MIR	-2803	NM_145686	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
109348	chr19	616971	617300	+	0	NA	TTS (NM_005035)	TTS (NM_005035)	16402	NM_005035	5442		NM_005035	ENSG00000099821	POLRMT	APOLMT|COXPD55|MTRNAP|MTRPOL|h-mtRPOL	RNA polymerase mitochondrial	protein-coding
203485	chr7	581501	582400	+	0	NA	intron (NM_001164759, intron 8 of 10)	AluJr|SINE|Alu	19992	NR_132384	101927000		NR_132384	ENSG00000229380	PRKAR1B-AS2	-	PRKAR1B antisense RNA 2	ncRNA
96571	chr17	40482001	40482200	+	0	NA	intron (NM_032865, intron 8 of 12)	intron (NM_032865, intron 8 of 12)	19523	NM_032865	84951		NM_032865	ENSG00000131746	TNS4	CTEN|PP14434	tensin 4	protein-coding
223574	chr8	144269921	144270380	+	0	NA	intron (NM_015201, intron 3 of 15)	intron (NM_015201, intron 3 of 15)	3697	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
238374	chrX	149934251	149934630	+	0	NA	intron (NM_001013845, intron 2 of 4)	intron (NM_001013845, intron 2 of 4)	4051	NM_001013845	541578		NM_001013845	ENSG00000197021	EOLA2	CXorf40B	endothelium and lymphocyte associated ASCH domain 2	protein-coding
144906	chr20	36946661	36948580	+	0	NA	intron (NM_001363733, intron 1 of 15)	intron (NM_001363733, intron 1 of 15)	4088	NM_015474	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
77028	chr15	78740171	78741080	+	0	NA	Intergenic	Intergenic	-11412	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
101373	chr17	67257201	67258400	+	0	NA	intron (NR_136398, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	-12604	NM_001330447	9931		NM_014877	ENSG00000198265	HELZ	DHRC|DRHC|HUMORF5	helicase with zinc finger	protein-coding
309	chr1	972271	972430	+	0	NA	exon (NM_032129, exon 10 of 16)	exon (NM_032129, exon 10 of 16)	5868	NM_001160184	84069		NM_032129	ENSG00000187583	PLEKHN1	CLPABP	pleckstrin homology domain containing N1	protein-coding
24650	chr1	246925521	246925980	+	0	NA	intron (NR_136586, intron 1 of 36)	MSTB|LTR|ERVL-MaLR	5608	NM_015446	25909		NM_015446	ENSG00000153207	AHCTF1	ELYS|MST108|MSTP108|TMBS62	AT-hook containing transcription factor 1	protein-coding
12517	chr1	108380251	108380550	+	0	NA	Intergenic	Intergenic	-69943	NM_001143987	653149		NM_001143987	ENSG00000186086	NBPF6	-	NBPF member 6	protein-coding
13708	chr1	116766151	116766250	+	0	NA	intron (NM_001328609, intron 4 of 4)	intron (NM_001328609, intron 4 of 4)	11770	NM_001767	914		NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding
130994	chr2	87783371	87783850	+	0	NA	exon (NM_001078170, exon 20 of 23)	exon (NM_001078170, exon 20 of 23)	35517	NM_001032392	5343		NM_001032392	ENSG00000183281	PLGLB1	PLGL|PLGP1|PRGB|PRP-B	plasminogen like B1	protein-coding
16395	chr1	154418051	154418650	+	0	NA	intron (NM_001206866, intron 1 of 6)	intron (NM_001206866, intron 1 of 6)	-11786	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
163858	chr3	52489471	52489900	+	0	NA	intron (NM_007184, intron 17 of 20)	intron (NM_007184, intron 17 of 20)	-5653	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
122208	chr19	48963671	48964500	+	0	NA	Intergenic	Intergenic	-1224	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
6864	chr1	31152221	31152980	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-86883	NM_014676	9698		NM_014676	ENSG00000134644	PUM1	HSPUM|NEDMSF|PUMH|PUMH1|PUML1|SCA47	pumilio RNA binding family member 1	protein-coding
180254	chr5	1653651	1654780	+	0	NA	Intergenic	Intergenic	-20210	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
1312	chr1	2402351	2402800	+	0	NA	intron (NM_007033, intron 6 of 6)	CpG-196	9989	NM_002617	5192		NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding
110432	chr19	1972871	1973230	+	0	NA	intron (NM_001319, intron 2 of 11)	AluY|SINE|Alu	-18501	NR_033400	255193		NM_152771	ENSG00000180846	CSNK1G2-AS1	C19orf34	CSNK1G2 antisense RNA 1	ncRNA
169005	chr3	152433921	152434650	+	0	NA	intron (NM_207296, intron 4 of 8)	L1PREC2|LINE|L1	-93295	NR_132656	645843		NM_001123228	ENSG00000293032	TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo
105911	chr18	3445921	3446250	+	0	NA	intron (NM_174886, intron 2 of 3)	intron (NM_174886, intron 2 of 3)	-1457	NM_173207	7050		NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding
96620	chr17	40559821	40561350	+	0	NA	promoter-TSS (NM_001301718)	promoter-TSS (NM_001301718)	-191	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
115578	chr19	15841971	15842530	+	0	NA	Intergenic	L2c|LINE|L2	13303	NR_015379	652995		NR_015379	ENSG00000214049	UCA1	CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36	urothelial cancer associated 1	ncRNA
16360	chr1	154336971	154338180	+	0	NA	exon (NM_001005855, exon 12 of 12)	exon (NM_001005855, exon 12 of 12)	8777	NM_001367934	57198		NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding
26537	chr10	21518321	21519450	+	0	NA	5' UTR (NM_207371, exon 4 of 4)	5' UTR (NM_207371, exon 4 of 4)	6797	NM_207371	387640		NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
101079	chr17	64917751	64918150	+	0	NA	intron (NM_199340, intron 2 of 14)	AluSq|SINE|Alu	1541	NM_199340	374819		NM_199340	ENSG00000176809	LRRC37A3	LRRC37|LRRC37A	leucine rich repeat containing 37 member A3	protein-coding
231077	chr9	129711701	129712450	+	0	NA	TTS (NR_132102)	TTS (NR_132102)	6631	NR_132102	101929437		NR_132102	ENSG00000236024	PRRX2-AS1	-	PRRX2 antisense RNA 1	ncRNA
80504	chr16	2739651	2739950	+	0	NA	intron (NR_027275, intron 3 of 5)	intron (NR_027275, intron 3 of 5)	4997	NR_027274	100128788		NR_027274	ENSG00000205913	SRRM2-AS1	-	SRRM2 antisense RNA 1	ncRNA
130129	chr2	74655501	74655880	+	0	NA	intron (NR_073399, intron 1 of 11)	intron (NR_073399, intron 1 of 11)	1443	NM_004263	10505		NM_004263	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	ssemaphorin 4F	protein-coding
200127	chr6	130220821	130221080	+	0	NA	intron (NM_001258275, intron 3 of 13)	AluY|SINE|Alu	2001	NM_001017373	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
170238	chr3	184196571	184197130	+	0	NA	Intergenic	LTR16A|LTR|ERVL	10775	NM_001351299	55324		NM_018358	ENSG00000161204	ABCF3	EST201864	ATP binding cassette subfamily F member 3	protein-coding
46796	chr11	130159701	130159900	+	0	NA	promoter-TSS (NM_021978)	promoter-TSS (NM_021978)	18	NM_021978	6768		NM_021978	ENSG00000149418	ST14	ARCI11|CAP3|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	ST14 transmembrane serine protease matriptase	protein-coding
43458	chr11	78045851	78046520	+	0	NA	promoter-TSS (NM_001282406)	promoter-TSS (NM_001282406)	6	NM_001282406	65987		NM_023930	ENSG00000151364	KCTD14	-	potassium channel tetramerization domain containing 14	protein-coding
142812	chr20	16571351	16571800	+	0	NA	intron (NM_024704, intron 1 of 25)	intron (NM_024704, intron 1 of 25)	1873	NM_024704	55614		NM_024704	ENSG00000089177	KIF16B	C20orf23|KISC20ORF|SNX23	kinesin family member 16B	protein-coding
136351	chr2	176071751	176072250	+	0	NA	Intergenic	CpG	11962	NM_001080458	344191		NM_001080458	ENSG00000174279	EVX2	EVX-2	even-skipped homeobox 2	protein-coding
102621	chr17	75996871	75997750	+	0	NA	intron (NM_001113324, intron 3 of 3)	intron (NM_001113324, intron 3 of 3)	-3596	NM_001258	1018		NM_001258	ENSG00000250506	CDK3	-	cyclin dependent kinase 3	protein-coding
6393	chr1	27916421	27917600	+	0	NA	Intergenic	(TCCT)n|Simple_repeat|Simple_repeat	-2213	NM_001286076	6118		NM_002946	ENSG00000117748	RPA2	REPA2|RP-A p32|RP-A p34|RPA32	replication protein A2	protein-coding
128622	chr2	61238021	61238550	+	0	NA	intron (NM_014709, intron 53 of 79)	L2b|LINE|L2	60867	NR_152212	130872		NM_152392	ENSG00000293434	AHSA2P	AHA1|AHSA2|Hch1	activator of HSP90 ATPase homolog 2, pseudogene	pseudo
127434	chr2	42167151	42167650	+	0	NA	intron (NR_110584, intron 1 of 3)	MIR|SINE|MIR	-1953	NM_001145076	27436		NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	EMAP like 4	protein-coding
131274	chr2	96091001	96091400	+	0	NA	Intergenic	Intergenic	25371	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
465	chr1	1143921	1144900	+	0	NA	TTS (NR_038869)	TTS (NR_038869)	7393	NR_038869	254099		NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA
208273	chr7	65772121	65772630	+	0	NA	Intergenic	Intergenic	-1565	NR_038378	441242		NM_001013464	ENSG00000290926	LINC03006	-	long intergenic non-protein coding RNA 3006	ncRNA
39868	chr11	62435771	62436130	+	0	NA	intron (NM_024060, intron 5 of 5)	MIR|SINE|MIR	16917	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
114720	chr19	13169751	13169850	+	0	NA	Intergenic	AluJr|SINE|Alu	19389	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
40201	chr11	63035421	63036050	+	0	NA	Intergenic	Intergenic	-19890	NM_001184733	9376		NM_004254	ENSG00000149452	SLC22A8	OAT3	solute carrier family 22 member 8	protein-coding
81356	chr16	4811501	4812300	+	0	NA	intron (NR_136700, intron 12 of 14)	intron (NR_136700, intron 12 of 14)	-8950	NR_046480	79641		NM_024589	ENSG00000067836	ROGDI	KTZS|RAV2|ROGD1	rogdi atypical leucine zipper	protein-coding
171094	chr3	195497451	195497950	+	0	NA	Intergenic	Intergenic	45625	NM_001291504	5504		NM_006241	ENSG00000184203	PPP1R2	IPP-2|IPP2|PPP1R2A	protein phosphatase 1 regulatory inhibitor subunit 2	protein-coding
157362	chr22	44698651	44699530	+	0	NA	intron (NM_001198721, intron 2 of 9)	LTR85c|LTR|Gypsy?	-3108	NM_181334	553158		NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
73373	chr15	42498201	42498600	+	0	NA	intron (NM_130798, intron 1 of 6)	THE1D-int|LTR|ERVL-MaLR	2766	NM_003825	8773		NM_003825	ENSG00000092531	SNAP23	HsT17016|SNAP-23|SNAP23A|SNAP23B	synaptosome associated protein 23	protein-coding
39161	chr11	57324371	57326330	+	0	NA	promoter-TSS (NM_033396)	promoter-TSS (NM_033396)	-398	NM_033396	85456		NM_033396	ENSG00000149115	TNKS1BP1	CNOT12|TAB182	tankyrase 1 binding protein 1	protein-coding
33215	chr10	114043101	114044200	+	0	NA	promoter-TSS (NM_000684)	promoter-TSS (NM_000684)	-216	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
137245	chr2	191692421	191692680	+	0	NA	intron (NR_131917, intron 1 of 2)	AluJb|SINE|Alu	2369	NR_131917	64859		NM_001031716	ENSG00000173559	NABP1	NABP1-OT1|OBFC2A|SOSS-B2|SSB2	nucleic acid binding protein 1	protein-coding
175265	chr4	67508401	67508680	+	0	NA	intron (NR_155754, intron 10 of 18)	intron (NR_155754, intron 10 of 18)	36963	NR_155754	1060		NM_001812	ENSG00000145241	CENPC	CENP-C|CENPC1|MIF2|hcp-4	centromere protein C	protein-coding
75944	chr15	70266251	70266930	+	0	NA	Intergenic	L2c|LINE|L2	-168673	NM_001282979	7090		NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	TLE family member 3, transcriptional corepressor	protein-coding
34104	chr10	125934451	125934550	+	0	NA	intron (NM_001363549, intron 1 of 10)	intron (NM_001363549, intron 1 of 10)	37694	NM_001363549	92565		NM_145235	ENSG00000203780	FANK1	HSD13	fibronectin type III and ankyrin repeat domains 1	protein-coding
189451	chr5	173001151	173001730	+	0	NA	intron (NM_003945, intron 2 of 3)	intron (NM_003945, intron 2 of 3)	17669	NM_003945	8992		NM_003945	ENSG00000113732	ATP6V0E1	ATP6H|ATP6V0E|M9.2|Vma21|Vma21p	ATPase H+ transporting V0 subunit e1	protein-coding
201972	chr6	152188371	152188530	+	0	NA	intron (NM_033071, intron 127 of 145)	intron (NM_033071, intron 127 of 145)	-3072	NM_001347701	23345		NM_015293	ENSG00000131018	SYNE1	8B|AMC3|AMCM|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding
8985	chr1	44648671	44649030	+	0	NA	intron (NM_001319957, intron 11 of 13)	intron (NM_001319957, intron 11 of 13)	16882	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
91024	chr17	2811971	2812600	+	0	NA	intron (NM_001100398, intron 2 of 23)	intron (NM_001100398, intron 2 of 23)	15847	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
59136	chr13	21436871	21437130	+	0	NA	intron (NM_153251, intron 1 of 11)	Tigger1|DNA|TcMar-Tigger	22303	NR_104487	253832		NM_153251	ENSG00000180776	ZDHHC20	4933421L13Rik|DHHC-20|DHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein-coding
54827	chr12	94872951	94874230	+	0	NA	Intergenic	CpG	39136	NR_036685	160313		NR_036685	ENSG00000293230	KRT19P2	KRT19P5	keratin 19 pseudogene 2	pseudo
48510	chr12	9897471	9897630	+	0	NA	Intergenic	MER61C|LTR|ERV1	16061	NM_001190765	100431172		NM_001190765	ENSG00000256797	KLRF2	NKp65	killer cell lectin like receptor F2	protein-coding
73425	chr15	43107171	43107330	+	0	NA	Intergenic	Intergenic	-1212	NM_174916	197131		NM_174916	ENSG00000159459	UBR1	JBS	ubiquitin protein ligase E3 component n-recognin 1	protein-coding
203992	chr7	1753301	1753550	+	0	NA	Intergenic	L1MD2|LINE|L1	-11115	NR_120510	101927125		NR_120508	ENSG00000236081	ELFN1-AS1	MYCLo-2	ELFN1 antisense RNA 1	ncRNA
176083	chr4	82889701	82890300	+	0	NA	intron (NM_001077206, intron 1 of 25)	AluSx1|SINE|Alu	1153	NM_001077207	22872		NM_014933	ENSG00000138674	SEC31A	ABP125|ABP130|HPBKS|HSPC275|HSPC334|NEDSOSB|SEC31L1	SEC31 homolog A, COPII coat complex component	protein-coding
220768	chr8	102408621	102408880	+	0	NA	intron (NM_001282873, intron 1 of 58)	intron (NM_001282873, intron 1 of 58)	-3589	NR_168428	105375683		NR_168428		LOC105375683	-	uncharacterized LOC105375683	ncRNA
25345	chr10	6272571	6272930	+	0	NA	Intergenic	Intergenic	-53794	NR_040079	399715		NR_040079	ENSG00000215244	LINC02649	-	long intergenic non-protein coding RNA 2649	ncRNA
27090	chr10	27354721	27355250	+	0	NA	Intergenic	LTR49|LTR|ERV1	59383	NM_001034842	374308		NM_001034842	ENSG00000182077	PTCHD3	PTR	patched domain containing 3 (gene/pseudogene)	protein-coding
76919	chr15	78047761	78048580	+	0	NA	intron (NM_144572, intron 2 of 12)	intron (NM_144572, intron 2 of 12)	29482	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
111844	chr19	4575351	4575450	+	0	NA	Intergenic	Intergenic	-15716	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
231226	chr9	129966971	129967530	+	0	NA	intron (NM_001363755, intron 4 of 15)	AluSx1|SINE|Alu	75939	NM_015033	23048		NM_015033	ENSG00000187239	FNBP1	FBP17	formin binding protein 1	protein-coding
173074	chr4	6190971	6191130	+	0	NA	intron (NM_144720, intron 1 of 12)	intron (NM_144720, intron 1 of 12)	3569	NM_001306133	152789		NM_144720	ENSG00000152969	JAKMIP1	Gababrbp|JAMIP1|MARLIN1	janus kinase and microtubule interacting protein 1	protein-coding
222838	chr8	142608821	142609700	+	0	NA	Intergenic	Intergenic	5219	NM_015193	23237		NM_015193	ENSG00000198576	ARC	Arg3.1|hArc	activity regulated cytoskeleton associated protein	protein-coding
198979	chr6	110897001	110897480	+	0	NA	Intergenic	Intergenic	22456	NM_001287214	262		NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding
22293	chr1	212860001	212861330	+	0	NA	intron (NM_014053, intron 1 of 9)	L2a|LINE|L2	2390	NM_014053	28982		NM_014053	ENSG00000162769	FLVCR1	AXPC1|FLVCR|MFSD7B|PCA|PCARP|SLC49A1	FLVCR choline and heme transporter 1	protein-coding
93087	chr17	17639621	17639880	+	0	NA	Intergenic	AluSx4|SINE|Alu	37938	NR_131243	105371564		NR_131243	ENSG00000223979	SMCR2	TCONS_00025215	Smith-Magenis syndrome chromosome region, candidate 2	ncRNA
4236	chr1	19487751	19488580	+	0	NA	Intergenic	L2a|LINE|L2	-2626	NM_001206540	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
33654	chr10	119728071	119728630	+	0	NA	intron (NM_001243195, intron 1 of 4)	intron (NM_001243195, intron 1 of 4)	2300	NM_014937	22876		NM_014937	ENSG00000198825	INPP5F	MSTP007|MSTPO47|SAC2|hSAC2	inositol polyphosphate-5-phosphatase F	protein-coding
133294	chr2	113597671	113597850	+	0	NA	intron (NR_024077, intron 9 of 10)	intron (NR_024077, intron 9 of 10)	3816	NR_024005	84771		NM_032685		DDX11L2	-	DEAD/H-box helicase 11 like 2 (pseudogene)	pseudo
27065	chr10	27152471	27153000	+	0	NA	intron (NM_001253866, intron 1 of 17)	L2b|LINE|L2	1649	NM_139312	10730		NM_014263	ENSG00000136758	YME1L1	FTSH|MEG4|OPA11|PAMP|YME1L	YME1 like 1 ATPase	protein-coding
77398	chr15	83073421	83073880	+	0	NA	Intergenic	L1ME4a|LINE|L1	6315	NR_039740	100616404		NR_039740	ENSG00000263643	MIR4515	mir-4515	microRNA 4515	ncRNA
117875	chr19	32599401	32600200	+	0	NA	intron (NM_032139, intron 27 of 28)	intron (NM_032139, intron 27 of 28)	8669	NR_145718	109616972		NR_145718	ENSG00000201388	SNORA68B	-	small nucleolar RNA, H/ACA box 68B	snoRNA
195081	chr6	35569901	35570250	+	0	NA	Intergenic	AluY|SINE|Alu	-57179	NM_001289395	7287		NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	TUB like protein 1	protein-coding
117340	chr19	19529621	19530200	+	0	NA	intron (NM_198537, intron 2 of 6)	intron (NM_198537, intron 2 of 6)	999	NM_198537	374887		NM_198537	ENSG00000250067	YJEFN3	-	YjeF N-terminal domain containing 3	protein-coding
216470	chr8	19709951	19710450	+	0	NA	intron (NM_001354476, intron 1 of 8)	intron (NM_001354476, intron 1 of 8)	-27439	NR_024040	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
134121	chr2	134128721	134128980	+	0	NA	intron (NM_001371457, intron 1 of 16)	intron (NM_001371457, intron 1 of 16)	1725	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA
62714	chr13	104769301	104769900	+	0	NA	Intergenic	Intergenic	-696267	NM_001161814	267012		NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding
51300	chr12	51247521	51248700	+	0	NA	intron (NM_001031628, intron 2 of 3)	intron (NM_001031628, intron 2 of 3)	9284	NM_001136267	9802		NM_014764	ENSG00000183283	DAZAP2	PRTB	DAZ associated protein 2	protein-coding
229852	chr9	126328651	126328750	+	0	NA	intron (NM_033446, intron 1 of 9)	MIR|SINE|MIR	1871	NM_001011703	89853		NM_033446	ENSG00000196814	MVB12B	C9orf28|FAM125B	multivesicular body subunit 12B	protein-coding
30490	chr10	79267751	79268130	+	0	NA	intron (NM_020338, intron 7 of 24)	intron (NM_020338, intron 7 of 24)	-79529	NM_005729	10105		NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding
92048	chr17	7499901	7500380	+	0	NA	intron (NM_000937, intron 10 of 29)	AluYa5|SINE|Alu	15774	NM_000937	5430		NM_000937	ENSG00000181222	POLR2A	NEDHIB|POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1	RNA polymerase II subunit A	protein-coding
85525	chr16	50806121	50806980	+	0	NA	promoter-TSS (NR_146573)	promoter-TSS (NR_146573)	-122	NR_146573	105371252		NR_146573	ENSG00000261703	LINC02168	-	long intergenic non-protein coding RNA 2168	ncRNA
153503	chr22	26491171	26491330	+	0	NA	TTS (NM_001346857)	TTS (NM_001346857)	7373	NM_001013694	402055		NM_001013694	ENSG00000100104	SRRD	HC/HCC|SRR1L	SRR1 domain containing	protein-coding
103099	chr17	77341801	77342770	+	0	NA	intron (NM_006640, intron 1 of 10)	Tigger1|DNA|TcMar-Tigger	22770	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
62675	chr13	102606821	102607080	+	0	NA	intron (NR_160411, intron 2 of 28)	MLT1A|LTR|ERVL-MaLR	9964	NM_001330588	7174		NM_003291	ENSG00000134900	TPP2	IMD78|TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding
233097	chr9	137113271	137114090	+	0	NA	intron (NM_013379, intron 4 of 12)	intron (NM_013379, intron 4 of 12)	1053	NM_013379	29952		NM_013379	ENSG00000176978	DPP7	DPP2|DPPII|QPP	dipeptidyl peptidase 7	protein-coding
44695	chr11	111512451	111513300	+	0	NA	promoter-TSS (NM_017589)	promoter-TSS (NM_017589)	-63	NR_029839	407041		NR_029839	ENSG00000207811	MIR34B	MIRN34B|miRNA34B|mir-34b	microRNA 34b	ncRNA
225735	chr9	37030501	37031730	+	0	NA	intron (NR_103999, intron 1 of 8)	intron (NR_103999, intron 1 of 8)	3153	NM_001280551	5079		NM_016734	ENSG00000196092	PAX5	ALL3|BSAP|PAX-5	paired box 5	protein-coding
88132	chr16	81616021	81617930	+	0	NA	intron (NM_030629, intron 2 of 20)	intron (NM_030629, intron 2 of 20)	5627	NR_106759	102465251		NR_106759	ENSG00000275109	MIR6504	hsa-mir-6504	microRNA 6504	ncRNA
3943	chr1	18575571	18575730	+	0	NA	Intergenic	Intergenic	-55196	NM_002584	5081		NM_002584	ENSG00000009709	PAX7	CMYP19|HUP1|MYOSCO|PAX7B|RMS2	paired box 7	protein-coding
114173	chr19	11377021	11377630	+	0	NA	non-coding (NR_033663, exon 8 of 8)	non-coding (NR_033663, exon 8 of 8)	2659	NM_175871	126074		NM_175871	ENSG00000173928	SWSAP1	C19orf39|SWS1AP1|ZSWIM7AP1	SWIM-type zinc finger 7 associated protein 1	protein-coding
195200	chr6	36113151	36113800	+	0	NA	Intergenic	L1MC|LINE|L1	-17038	NR_072996	5603		NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding
30465	chr10	79147721	79147980	+	0	NA	intron (NM_020338, intron 3 of 24)	intron (NM_020338, intron 3 of 24)	78884	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
125107	chr2	9752501	9753700	+	0	NA	Intergenic	Intergenic	-90342	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
171406	chr3	196203621	196204280	+	0	NA	intron (NR_135617, intron 5 of 8)	intron (NR_135617, intron 5 of 8)	7450	NR_135617	131540		NM_001039617	ENSG00000163958	ZDHHC19	DHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein-coding
206859	chr7	37442771	37442930	+	0	NA	intron (NM_001206480, intron 1 of 21)	intron (NM_001206480, intron 1 of 21)	6102	NM_014800	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
136857	chr2	186493671	186494000	+	0	NA	intron (NM_018471, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	7575	NM_018471	55854		NM_018471	ENSG00000065548	ZC3H15	DFRP1|HT010|LEREPO4|MSTP012	zinc finger CCCH-type containing 15	protein-coding
44660	chr11	110431101	110431850	+	0	NA	intron (NM_004109, intron 1 of 3)	L2c|LINE|L2	1527	NM_004109	2230		NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding
115986	chr19	17081601	17081800	+	0	NA	intron (NM_004145, intron 1 of 39)	AluSx|SINE|Alu	5923	NM_004145	4650		NM_004145	ENSG00000099331	MYO9B	CELIAC4|MYR5	myosin IXB	protein-coding
43810	chr11	86541051	86541550	+	0	NA	intron (NR_147828, intron 4 of 14)	L1PA7|LINE|L1	130898	NR_147831	10873		NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding
98185	chr17	46107101	46107450	+	0	NA	intron (NM_015443, intron 2 of 14).2	L2a|LINE|L2	85507	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
103142	chr17	77402971	77403650	+	0	NA	intron (NM_001113493, intron 2 of 10)	intron (NM_001113493, intron 2 of 10)	-1767	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
1730	chr1	5951021	5951330	+	0	NA	intron (NM_001291593, intron 6 of 26)	intron (NM_001291593, intron 6 of 26)	41250	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
49298	chr12	21369401	21369680	+	0	NA	intron (NM_001329201, intron 1 of 2)	MIRb|SINE|MIR	-3362	NM_000415	3375		NM_000415	ENSG00000121351	IAPP	DAP|IAP	islet amyloid polypeptide	protein-coding
59909	chr13	30804871	30805090	+	0	NA	intron (NR_047012, intron 1 of 1)	intron (NR_047012, intron 1 of 1)	1774	NR_047012	100874158		NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA
221594	chr8	125434001	125435330	+	0	NA	intron (NM_001282985, intron 2 of 2)	intron (NM_001282985, intron 2 of 2)	2456	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
60576	chr13	41811471	41812230	+	0	NA	intron (NM_015058, intron 16 of 44)	intron (NM_015058, intron 16 of 44)	149235	NM_001009814	23078		NM_015058	ENSG00000102763	VWA8	KIAA0564|P7BP2|RP97	von Willebrand factor A domain containing 8	protein-coding
196710	chr6	44951221	44951550	+	0	NA	intron (NR_146635, intron 9 of 12)	intron (NR_146635, intron 9 of 12)	246385	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
199513	chr6	118705721	118706450	+	0	NA	intron (NM_001178035, intron 1 of 13)	intron (NM_001178035, intron 1 of 13)	3990	NM_001178035	387119		NM_206921	ENSG00000111860	CEP85L	C6orf204|LIS10|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding
103393	chr17	78167251	78167550	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1145	NM_001320523	9144		NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding
32853	chr10	110064101	110064680	+	0	NA	intron (NM_016824, intron 1 of 14)	L1ME3A|LINE|L1	-56009	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
33333	chr10	116739971	116740130	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	2516	NM_025015	259217		NM_025015	ENSG00000165868	HSPA12A	-	heat shock protein family A (Hsp70) member 12A	protein-coding
66647	chr14	63871801	63872000	+	0	NA	intron (NM_015180, intron 1 of 114)	intron (NM_015180, intron 1 of 114)	18896	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
222467	chr8	140028001	140028400	+	0	NA	intron (NR_164662, intron 16 of 22)	intron (NR_164662, intron 16 of 22)	72335	NR_144431	359809		NR_144431	ENSG00000282164	PEG13	-	paternally expressed 13	ncRNA
183703	chr5	80963151	80963650	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-2493	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
123526	chr19	54247771	54248330	+	0	NA	Intergenic	Intergenic	-5255	NM_001360167	79168		NM_024318	ENSG00000244482	LILRA6	CD85b|ILT-8|ILT5|ILT8|LILRB3|LILRB6	leukocyte immunoglobulin like receptor A6	protein-coding
138326	chr2	203780971	203781330	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	74511	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
2853	chr1	11275601	11275800	+	0	NA	intron (NM_001330350, intron 1 of 1)	AluJr|SINE|Alu	2502	NM_001330349	29914		NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding
179364	chr4	183408851	183409030	+	0	NA	Intergenic	Intergenic	-35696	NM_001317343	55602		NM_017632	ENSG00000168564	CDKN2AIP	CARF	CDKN2A interacting protein	protein-coding
40886	chr11	65121371	65122750	+	0	NA	promoter-TSS (NR_037568)	promoter-TSS (NR_037568)	74	NM_001997	2197		NM_001997	ENSG00000149806	FAU	FAU1|Fub1|Fubi|MNSFbeta|RPS30|S30|asr1|eS30	FAU ubiquitin like and ribosomal protein S30 fusion	protein-coding
70587	chr14	102677621	102678080	+	0	NA	intron (NM_015156, intron 2 of 11)	SVA_D|Retroposon|SVA	85201	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
211829	chr7	108459921	108460190	+	0	NA	Intergenic	MIR|SINE|MIR	-3335	NM_001371122	4897		NM_005010	ENSG00000091129	NRCAM	NEDNMS	neuronal cell adhesion molecule	protein-coding
23468	chr1	228614121	228614430	+	0	NA	TTS (NR_023363).3	TTS (NR_023363).3	593	NR_023378	100169767		NR_023378	ENSG00000202257	RNA5S16	RN5S16	RNA, 5S ribosomal 16	rRNA
166619	chr3	119463001	119464530	+	0	NA	promoter-TSS (NM_018266)	promoter-TSS (NM_018266)	-150	NM_018266	55254		NM_018266	ENSG00000176142	TMEM39A	SUSR2	transmembrane protein 39A	protein-coding
91394	chr17	4589551	4589850	+	0	NA	intron (NM_001375361, intron 1 of 6)	intron (NM_001375361, intron 1 of 6)	5171	NM_001375361	342527		NM_198501	ENSG00000188176	SMTNL2	-	smoothelin like 2	protein-coding
23100	chr1	226671301	226672000	+	0	NA	intron (NR_103784, intron 1 of 1)	L2a|LINE|L2	3418	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
225869	chr9	38516401	38516600	+	0	NA	Intergenic	Charlie1|DNA|hAT-Charlie	28872	NR_047651	100289137		NR_047651	ENSG00000180071	FAM95C	-	family with sequence similarity 95 member C	ncRNA
163677	chr3	52234301	52236130	+	0	NA	intron (NM_007284, intron 1 of 8)	intron (NM_007284, intron 1 of 8)	3943	NM_007284	11344		NM_007284	ENSG00000247596	TWF2	A6RP|A6r|MSTP011|PTK9L	twinfilin actin binding protein 2	protein-coding
165231	chr3	73004001	73004200	+	0	NA	intron (NM_001318025, intron 2 of 7)	AluSz|SINE|Alu	7289	NM_001318027	151987		NM_174907	ENSG00000163605	PPP4R2	PP4R2	protein phosphatase 4 regulatory subunit 2	protein-coding
148062	chr20	63262001	63262780	+	0	NA	TTS (NR_024389)	TTS (NR_024389)	-7927	NM_152864	128414		NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	sodium/potassium transporting ATPase interacting 4	protein-coding
220796	chr8	102655301	102657830	+	0	NA	promoter-TSS (NM_005655)	promoter-TSS (NM_005655)	317	NR_160673	101927245		NR_160672	ENSG00000283959	LOC101927245	-	uncharacterized LOC101927245	ncRNA
166787	chr3	122509101	122509300	+	0	NA	intron (NM_002264, intron 1 of 13)	AluSx1|SINE|Alu	5739	NR_026698	3836		NM_002264	ENSG00000114030	KPNA1	IPOA5|NPI-1|RCH2|SRP1	karyopherin subunit alpha 1	protein-coding
10471	chr1	66339921	66340280	+	0	NA	intron (NM_001037340, intron 6 of 14)	intron (NM_001037340, intron 6 of 14)	7992	NM_001037339	5142		NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding
62222	chr13	98512671	98512830	+	0	NA	intron (NM_003576, intron 2 of 10)	intron (NM_003576, intron 2 of 10)	9375	NM_003576	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
16025	chr1	152185451	152185800	+	0	NA	Intergenic	Intergenic	-26397	NM_001122965	126638		NM_152364	ENSG00000215853	RPTN	-	repetin	protein-coding
196567	chr6	44125501	44125700	+	0	NA	intron (NM_001318767, intron 1 of 2)	AluSz|SINE|Alu	667	NM_001318770	64928		NM_032111	ENSG00000180992	MRPL14	L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32|uL14m	mitochondrial ribosomal protein L14	protein-coding
178891	chr4	157180351	157180450	+	0	NA	Intergenic	L1PA3|LINE|L1	-39720	NM_001379000	2891		NM_000826	ENSG00000120251	GRIA2	GLUR2|GLURB|GluA2|GluR-K2|HBGR2|NEDLIB|gluR-2|gluR-B	glutamate ionotropic receptor AMPA type subunit 2	protein-coding
167463	chr3	129107471	129107630	+	0	NA	intron (NM_001204890, intron 11 of 12)	intron (NM_001204890, intron 11 of 12)	14254	NM_001204887	339122		NM_198490	ENSG00000172780	RAB43	RAB11B|RAB41	RAB43, member RAS oncogene family	protein-coding
176389	chr4	88684851	88685030	+	0	NA	intron (NM_001375479, intron 21 of 25)	U6|snRNA|snRNA	12889	NM_153757	266812		NM_153757	ENSG00000177432	NAP1L5	DRLM	nucleosome assembly protein 1 like 5	protein-coding
101046	chr17	64808271	64809150	+	0	NA	intron (NR_024386, intron 4 of 10)	intron (NR_024386, intron 4 of 10)	13392	NR_036271	100422961		NR_036271	ENSG00000284172	MIR4315-2	-	microRNA 4315-2	ncRNA
183954	chr5	88250351	88250450	+	0	NA	intron (NM_001289007, intron 1 of 12)	intron (NM_001289007, intron 1 of 12)	18445	NM_153354	153396		NM_153354	ENSG00000164180	TMEM161B	FLB3342|PRO1313	transmembrane protein 161B	protein-coding
182362	chr5	60416121	60416380	+	0	NA	intron (NM_001364599, intron 1 of 16)	LTR12C|LTR|ERV1	-43587	NM_001364600	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
77156	chr15	79967771	79968630	+	0	NA	intron (NM_001114735, intron 1 of 2)	L2b|LINE|L2	2996	NM_001114735	597		NM_004049	ENSG00000140379	BCL2A1	ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1	BCL2 related protein A1	protein-coding
31564	chr10	97308871	97309280	+	0	NA	Intergenic	Intergenic	-10196	NM_005479	10023		NM_005479	ENSG00000165879	FRAT1	-	FRAT regulator of WNT signaling pathway 1	protein-coding
14269	chr1	143496651	143497100	+	0	NA	Intergenic	Intergenic	-72191	NR_027356	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
104625	chr17	81432671	81432830	+	0	NA	intron (NM_001377448, intron 3 of 27)	intron (NM_001377448, intron 3 of 27)	18438	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA
17383	chr1	156598271	156598880	+	0	NA	intron (NM_182679, intron 2 of 7)	intron (NM_182679, intron 2 of 7)	2904	NM_182679	54865		NM_015590	ENSG00000160818	GPATCH4	GPATC4	G-patch domain containing 4 (gene/pseudogene)	protein-coding
65488	chr14	51873221	51873850	+	0	NA	intron (NM_001243774, intron 1 of 2)	intron (NM_001243774, intron 1 of 2)	12923	NM_053064	54331		NM_053064	ENSG00000186469	GNG2	HG3F1	G protein subunit gamma 2	protein-coding
173938	chr4	25768001	25768200	+	0	NA	intron (NM_001297592, intron 17 of 23)	intron (NM_001297592, intron 17 of 23)	94888	NM_015187	23231		NM_015187	ENSG00000091490	SEL1L3	Sel-1L3	SEL1L family member 3	protein-coding
64763	chr14	34613001	34613200	+	0	NA	intron (NR_159357, intron 2 of 12)	MLT1D|LTR|ERVL-MaLR	17048	NR_159358	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
128400	chr2	55142001	55142200	+	0	NA	Intergenic	AluJr|SINE|Alu	-4269	NM_001321904	57142		NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding
97259	chr17	43004321	43004830	+	0	NA	Intergenic	AluSg|SINE|Alu	-2209	NM_001330230	3430		NM_005533	ENSG00000068079	IFI35	IFP35	interferon induced protein 35	protein-coding
183604	chr5	80207051	80207150	+	0	NA	intron (NM_001174072, intron 1 of 11)	AluY|SINE|Alu	48948	NR_126061	256987		NM_178276	ENSG00000164300	SERINC5	C5orf12|TPO1	serine incorporator 5	protein-coding
76435	chr15	74799751	74800850	+	0	NA	intron (NM_001127190, intron 6 of 13)	intron (NM_001127190, intron 6 of 13)	-11543	NR_039738	100616183		NR_039738	ENSG00000264386	MIR4513	-	microRNA 4513	ncRNA
221402	chr8	123516071	123516230	+	0	NA	intron (NM_148177, intron 1 of 5)	intron (NM_148177, intron 1 of 5)	15993	NM_148177	114907		NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding
108699	chr18	77060371	77060680	+	0	NA	intron (NM_001025100, intron 3 of 3)	AluSp|SINE|Alu	-43470	NM_002385	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
238697	chrX	154073971	154074530	+	0	NA	intron (NM_001316337, intron 2 of 4)	HAL1ME|LINE|L1	22719	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
205765	chr7	23521871	23522030	+	0	NA	5' UTR (NM_001362761, exon 2 of 8)	5' UTR (NM_001362761, exon 2 of 8)	10031	NM_013293	29896		NM_013293	ENSG00000164548	TRA2A	AWMS1|HSU53209	transformer 2 alpha homolog	protein-coding
130435	chr2	85408321	85409150	+	0	NA	intron (NM_001256139, intron 1 of 9)	intron (NM_001256139, intron 1 of 9)	1097	NM_001320732	822		NM_001747	ENSG00000042493	CAPG	AFCP|HEL-S-66|MCP	capping actin protein, gelsolin like	protein-coding
109216	chr19	475351	476000	+	0	NA	promoter-TSS (NM_001385597)	promoter-TSS (NM_001385597)	-692	NM_182577	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
25032	chr10	3748321	3748580	+	0	NA	intron (NR_131187, intron 1 of 1)	(TTTCTTTTTT)n|Simple_repeat|Simple_repeat	36759	NR_027653	1316		NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	KLF transcription factor 6	protein-coding
167870	chr3	134489001	134489430	+	0	NA	intron (NM_001353112, intron 2 of 13)	MER3|DNA|hAT-Charlie	3042	NM_001353125	80254		NM_025180	ENSG00000182923	CEP63	SCKL6	centrosomal protein 63	protein-coding
112297	chr19	5864001	5864200	+	0	NA	Intergenic	MIRc|SINE|MIR	6440	NM_002034	2527		NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding
152217	chr22	20135421	20135680	+	0	NA	intron (NM_001185024, intron 1 of 10)	intron (NM_001185024, intron 1 of 10)	3746	NM_013373	29801		NM_013373	ENSG00000099904	ZDHHC8	DHHC8|ZDHHCL1|ZNF378	zinc finger DHHC-type palmitoyltransferase 8	protein-coding
51860	chr12	53478801	53479000	+	0	NA	TTS (NM_001193511)	TTS (NM_001193511)	14432	NR_109828	102157401		NR_109828	ENSG00000282977	PCBP2-OT1	TUC.338|TUC338|uc.338	PCBP2 overlapping transcript 1	ncRNA
91743	chr17	6750871	6751030	+	0	NA	Intergenic	Intergenic	-4497	NM_001353135	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
167345	chr3	128756771	128757330	+	0	NA	intron (NM_004637, intron 1 of 5)	AluSx|SINE|Alu	30867	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
83347	chr16	25034001	25034200	+	0	NA	Intergenic	AluJo|SINE|Alu	2359	NR_038379	554206		NR_038379	ENSG00000291179	LOC554206	-	leucine carboxyl methyltransferase 1 pseudogene	pseudo
26701	chr10	22646101	22647450	+	0	NA	intron (NM_005028, intron 1 of 9)	intron (NM_005028, intron 1 of 9)	67333	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
1786	chr1	6101251	6101700	+	0	NA	TTS (NM_003636)	TTS (NM_003636)	55587	NM_001199863	8514		NM_003636	ENSG00000069424	KCNAB2	AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein-coding
195302	chr6	36544021	36544880	+	0	NA	intron (NM_007271, intron 1 of 13)	intron (NM_007271, intron 1 of 13)	3029	NM_007271	11329		NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding
178773	chr4	153433001	153434100	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-32796	NM_015196	23240		NM_015196	ENSG00000121210	TMEM131L	KIAA0922	transmembrane 131 like	protein-coding
36093	chr11	3016871	3017180	+	0	NA	intron (NR_165428, intron 16 of 22)	intron (NR_165428, intron 16 of 22)	-12369	NR_046580	100852407		NR_046580	ENSG00000247473	CARS1-AS1	CARS-AS1	CARS1 antisense RNA 1	ncRNA
120244	chr19	42398751	42399050	+	0	NA	intron (NR_073180, intron 1 of 2)	intron (NR_073180, intron 1 of 2)	1752	NR_073180	100996307		NR_073179	ENSG00000213904	LIPE-AS1	-	LIPE antisense RNA 1	ncRNA
179856	chr5	528121	528980	+	0	NA	Intergenic	CpG	-4101	NM_004174	6550		NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding
30391	chr10	78155771	78155930	+	0	NA	Intergenic	L1MB5|LINE|L1	-92775	NR_038985	100132987		NR_038985	ENSG00000230417	LINC00856	-	long intergenic non-protein coding RNA 856	ncRNA
51895	chr12	53571351	53571650	+	0	NA	intron (NR_159377, intron 2 of 14)	intron (NR_159377, intron 2 of 14)	54490	NM_001366562	11016		NM_006856	ENSG00000170653	ATF7	ATFA	activating transcription factor 7	protein-coding
51401	chr12	51974721	51975580	+	0	NA	intron (NM_020327, intron 1 of 8)	intron (NM_020327, intron 1 of 8)	21770	NM_020327	91		NM_004302	ENSG00000135503	ACVR1B	ACTRIB|ACVRLK4|ALK4|SKR2	activin A receptor type 1B	protein-coding
98940	chr17	48631101	48631580	+	0	NA	Intergenic	Intergenic	1219	NR_029582	406972		NR_029582	ENSG00000210741	MIR196A1	MIRN196-1|MIRN196A1|mir-196a-1	microRNA 196a-1	ncRNA
55409	chr12	104477871	104479130	+	0	NA	intron (NM_018413, intron 1 of 2)	intron (NM_018413, intron 1 of 2)	21552	NM_001173982	50515		NM_018413	ENSG00000171310	CHST11	C4ST|C4ST-1|C4ST1|HSA269537|OCBMD	carbohydrate sulfotransferase 11	protein-coding
161374	chr3	40907821	40907950	+	0	NA	Intergenic	L1PA3|LINE|L1	-291620	NM_001330729	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
154513	chr22	35915151	35915250	+	0	NA	intron (NM_001349999, intron 2 of 13)	intron (NM_001349999, intron 2 of 13)	46430	NM_001349996	23543		NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding fox-1 homolog 2	protein-coding
90292	chr17	1034751	1034850	+	0	NA	intron (NM_001282149, intron 11 of 17).3	intron (NM_001282149, intron 11 of 17).3	-2969	NM_001256847	29		NM_001092	ENSG00000159842	ABR	MDB	ABR activator of RhoGEF and GTPase	protein-coding
114593	chr19	12943391	12944500	+	0	NA	3' UTR (NM_004343, exon 9 of 9)	3' UTR (NM_004343, exon 9 of 9)	-1869	NM_001270362	5886		NM_005053	ENSG00000179262	RAD23A	HHR23A|HR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding
6692	chr1	29168301	29168500	+	0	NA	intron (NM_005626, intron 1 of 5)	intron (NM_005626, intron 1 of 5)	13500	NM_005626	6429		NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding
9485	chr1	51061321	51061400	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	1342	NR_106754	102466656		NR_106754	ENSG00000275816	MIR6500	hsa-mir-6500	microRNA 6500	ncRNA
81116	chr16	4378001	4379550	+	0	NA	intron (NM_138440, intron 1 of 1)	intron (NM_138440, intron 1 of 1)	6927	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
166251	chr3	112327371	112327930	+	0	NA	non-coding (NR_147411, exon 3 of 5)	non-coding (NR_147411, exon 3 of 5)	-4923	NM_001365855	4345		NM_005944	ENSG00000091972	CD200	MOX1|MOX2|MRC|OX-2	CD200 molecule	protein-coding
69988	chr14	99982351	99983200	+	0	NA	intron (NM_001330221, intron 1 of 13)	(AATTT)n|Simple_repeat|Simple_repeat	11353	NM_001330221	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
82512	chr16	17473051	17473350	+	0	NA	Intergenic	AluSx|SINE|Alu	-2240	NM_022166	64131		NM_022166	ENSG00000103489	XYLT1	DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I	xylosyltransferase 1	protein-coding
140216	chr2	231716701	231718050	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	4061	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
222225	chr8	133077651	133078200	+	0	NA	intron (NM_001045556, intron 1 of 8)	MER20|DNA|hAT-Charlie	-17571	NM_006748	6503		NM_006748	ENSG00000155926	SLA	SLA1|SLAP	Src like adaptor	protein-coding
27509	chr10	32290871	32291030	+	0	NA	intron (NR_168511, intron 6 of 13)	AluSx|SINE|Alu	56208	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
220047	chr8	93406101	93406300	+	0	NA	intron (NR_033858, intron 7 of 10)	L1PA2|LINE|L1	-239350	NR_161372	389676		NR_161372	ENSG00000279847	LINC02906	C8orf87	long intergenic non-protein coding RNA 2906	ncRNA
43684	chr11	85815421	85815680	+	0	NA	Intergenic	MIRc|SINE|MIR	-4391	NM_001289608	54843		NM_017695	ENSG00000137501	SYTL2	CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A	synaptotagmin like 2	protein-coding
129441	chr2	69492821	69493330	+	0	NA	intron (NM_001371575, intron 17 of 20)	AluYc|SINE|Alu	27096	NR_003705	100124535		NR_003705	ENSG00000207016	SNORA36C	-	small nucleolar RNA, H/ACA box 36C	snoRNA
135468	chr2	161307701	161308790	+	0	NA	promoter-TSS (NM_005805)	promoter-TSS (NM_005805)	-180	NM_005805	10213		NM_005805	ENSG00000115233	PSMD14	PAD1|POH1|RPN11	proteasome 26S subunit, non-ATPase 14	protein-coding
231799	chr9	132358951	132359050	+	0	NA	Intergenic	Intergenic	-4014	NM_015046	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
177448	chr4	113355571	113356200	+	0	NA	exon (NM_001148, exon 38 of 46)	exon (NM_001148, exon 38 of 46)	63046	NM_001354279	287		NM_001148	ENSG00000145362	ANK2	ANK-2|CFAP87|FAP87|LQT4|brank-2	ankyrin 2	protein-coding
101797	chr17	73230601	73230930	+	0	NA	intron (NM_032837, intron 1 of 2)	intron (NM_032837, intron 1 of 2)	1629	NM_001289410	84923		NM_032837	ENSG00000133193	VCF1	FAM104A	VCP nuclear cofactor family member 1	protein-coding
200738	chr6	137740871	137741030	+	0	NA	Intergenic	Intergenic	-1913	NR_121619	100507406		NR_121618	ENSG00000234956	LINC02539	-	long intergenic non-protein coding RNA 2539	ncRNA
95036	chr17	32494071	32494230	+	0	NA	3' UTR (NM_015194, exon 22 of 22)	3' UTR (NM_015194, exon 22 of 22)	7157	NM_003885	8851		NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
184136	chr5	94737901	94738300	+	0	NA	intron (NM_024717, intron 19 of 22)	intron (NM_024717, intron 19 of 22)	119431	NM_032290	84250		NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding
23527	chr1	229131301	229131700	+	0	NA	Intergenic	Intergenic	43301	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
93630	chr17	19167471	19167830	+	0	NA	Intergenic	Intergenic	-5026	NR_160286	388436		NR_160286		LOC388436	-	uncharacterized protein ENSP00000382042	ncRNA
90561	chr17	1510771	1510930	+	0	NA	intron (NM_016532, intron 3 of 11)	AluJb|SINE|Alu	5762	NM_001135642	51763		NM_016532	ENSG00000132376	INPP5K	MDCCAID|PPS|SKIP	inositol polyphosphate-5-phosphatase K	protein-coding
69239	chr14	92847171	92847880	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	53220	NM_005113	9950		NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
1613	chr1	3674571	3674730	+	0	NA	intron (NM_001204185, intron 1 of 12)	intron (NM_001204185, intron 1 of 12)	-16022	NM_001204190	7161		NM_005427	ENSG00000078900	TP73	CILD47|P73	tumor protein p73	protein-coding
82388	chr16	16126221	16126680	+	0	NA	intron (NM_004996, intron 26 of 30)	AluSx1|SINE|Alu	97021	NM_001079528	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
76957	chr15	78126821	78127280	+	0	NA	intron (NM_001301224, intron 1 of 4)	MIRc|SINE|MIR	4395	NM_006383	10518		NM_006383	ENSG00000136425	CIB2	DFNB48|KIP2|USH1J	calcium and integrin binding family member 2	protein-coding
20296	chr1	197145901	197147450	+	0	NA	promoter-TSS (NM_001206846)	promoter-TSS (NM_001206846)	-6	NM_018136	259266		NM_018136	ENSG00000066279	ASPM	ASP|Calmbp1|MCPH5	assembly factor for spindle microtubules	protein-coding
146947	chr20	52128451	52128850	+	0	NA	intron (NM_199427, intron 5 of 8)	intron (NM_199427, intron 5 of 8)	-23166	NM_001319146	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
178674	chr4	152513201	152513400	+	0	NA	intron (NM_001349798, intron 2 of 13)	intron (NM_001349798, intron 2 of 13)	21733	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
202868	chr6	159862051	159862750	+	0	NA	Intergenic	HAL1|LINE|L1	-28588	NM_002377	4142		NM_002377	ENSG00000130368	MAS1	MAS|MGRA	MAS1 proto-oncogene, G protein-coupled receptor	protein-coding
212094	chr7	115851271	115851430	+	0	NA	Intergenic	MIR3|SINE|MIR	116963	NM_001244583	22797		NM_012252	ENSG00000105967	TFEC	TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L	transcription factor EC	protein-coding
57242	chr12	121557271	121558350	+	0	NA	intron (NM_001005366, intron 4 of 22)	MLT1C|LTR|ERVL-MaLR	22436	NM_001005366	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
117242	chr19	19432651	19433230	+	0	NA	intron (NM_001384517, intron 2 of 12)	L2b|LINE|L2	-2123	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
181307	chr5	40275651	40275950	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	223509	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
19733	chr1	181139351	181139650	+	0	NA	Intergenic	Intergenic	-34984	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
4280	chr1	19704451	19704900	+	0	NA	intron (NM_001349112, intron 12 of 14)	intron (NM_001349112, intron 12 of 14)	39800	NM_000871	3362		NM_000871	ENSG00000158748	HTR6	5-HT6|5-HT6R	5-hydroxytryptamine receptor 6	protein-coding
191070	chr6	3378301	3378780	+	0	NA	intron (NM_001382320, intron 1 of 1)	intron (NM_001382320, intron 1 of 1)	-54390	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
5453	chr1	25615501	25617750	+	0	NA	promoter-TSS (NM_001289010)	promoter-TSS (NM_001289010)	-166	NM_020379	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
220229	chr8	96332971	96333450	+	0	NA	intron (NM_014754, intron 12 of 12)	intron (NM_014754, intron 12 of 12)	53438	NR_125829	102724804		NR_125828		LOC102724804	-	uncharacterized LOC102724804	ncRNA
29181	chr10	68928871	68929230	+	0	NA	intron (NM_024045, intron 8 of 14)	AluSz|SINE|Alu	-27120	NM_004728	9188		NM_004728	ENSG00000165732	DDX21	GUA|GURDB|II/Gu|RH|RH II/Gu|RH-II/GU|RH-II/GuA|gu-alpha	DExD-box helicase 21	protein-coding
184614	chr5	105518671	105519000	+	0	NA	Intergenic	L1HS|LINE|L1	419361	NR_000039	9366		NM_004250	ENSG00000232159	RAB9BP1	RAB9P1	RAB9B, member RAS oncogene family pseudogene 1	pseudo
142304	chr20	3405071	3406150	+	0	NA	intron (NM_001009984, intron 1 of 36)	intron (NM_001009984, intron 1 of 36)	2052	NM_001009984	25943		NM_001009984	ENSG00000088854	DNAAF9	C20orf194	dynein axonemal assembly factor 9	protein-coding
164892	chr3	71101351	71101450	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	29186	NM_001370548	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
198524	chr6	106529301	106529700	+	0	NA	intron (NM_001371242, intron 7 of 21)	intron (NM_001371242, intron 7 of 21)	17645	NM_001624	202		NM_001624	ENSG00000112297	CRYBG1	AIM1|ST4	crystallin beta-gamma domain containing 1	protein-coding
18339	chr1	161199701	161199900	+	0	NA	promoter-TSS (NM_001320336)	promoter-TSS (NM_001320336)	485	NM_004550	4720		NM_004550	ENSG00000158864	NDUFS2	CI-49|LHONAR2|MC1DN6	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding
142031	chr20	1671871	1672530	+	0	NA	Intergenic	Intergenic	-14421	NM_018556	55423		NM_018556	ENSG00000089012	SIRPG	CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1	signal regulatory protein gamma	protein-coding
143662	chr20	31951101	31952700	+	0	NA	exon (NM_030815, exon 1 of 5)	exon (NM_030815, exon 1 of 5)	146	NM_030815	81572		NM_030815	ENSG00000088356	PDRG1	C20orf126|PDRG	p53 and DNA damage regulated 1	protein-coding
209386	chr7	76312001	76312400	+	0	NA	Intergenic	Intergenic	9527	NM_001540	3315		NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HMND3|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding
97217	chr17	42781701	42782050	+	0	NA	intron (NM_032387, intron 1 of 18)	intron (NM_032387, intron 1 of 18)	1265	NM_032387	65266		NM_032387	ENSG00000126562	WNK4	PHA2B|PRKWNK4	WNK lysine deficient protein kinase 4	protein-coding
135496	chr2	161953551	161953650	+	0	NA	intron (NM_001178016, intron 19 of 26)	AluSg|SINE|Alu	120615	NM_001379605	1803		NM_001935	ENSG00000197635	DPP4	ADABP|ADCP2|CD26|DPPIV|TP103	dipeptidyl peptidase 4	protein-coding
219817	chr8	81630551	81631090	+	0	NA	intron (NR_146081, intron 1 of 7)	CpG	457	NR_146081	650747		NR_146081		IMPA1P1	IMPA1P	inositol monophosphatase 1 pseudogene 1	pseudo
29888	chr10	73076671	73077100	+	0	NA	intron (NM_001017962, intron 1 of 14)	intron (NM_001017962, intron 1 of 14)	20089	NM_001142596	5033		NM_000917	ENSG00000122884	P4HA1	P4HA	prolyl 4-hydroxylase subunit alpha 1	protein-coding
182260	chr5	57192171	57192550	+	0	NA	intron (NM_001331037, intron 2 of 12)	intron (NM_001331037, intron 2 of 12)	16912	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
188004	chr5	149540851	149541480	+	0	NA	intron (NM_001892, intron 2 of 9)	AluSx1|SINE|Alu	9200	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
232108	chr9	133706971	133707880	+	0	NA	intron (NM_001134707, intron 11 of 20)	intron (NM_001134707, intron 11 of 20)	30927	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
152030	chr22	19446601	19448350	+	0	NA	exon (NM_001166242, exon 2 of 3)	exon (NM_001166242, exon 2 of 3)	236	NM_001166242	128977		NM_173793	ENSG00000242259	C22orf39	Pants	chromosome 22 open reading frame 39	protein-coding
170792	chr3	189071421	189071730	+	0	NA	Intergenic	(ACAGAC)n|Simple_repeat|Simple_repeat	-100396	NM_198485	285386		NM_198485	ENSG00000188001	TPRG1	FAM79B	tumor protein p63 regulated 1	protein-coding
224843	chr9	27571521	27571980	+	0	NA	intron (NM_145005, intron 1 of 4)	intron (NM_145005, intron 1 of 4)	1731	NM_018325	203228		NM_018325	ENSG00000147894	C9orf72	ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1	C9orf72-SMCR8 complex subunit	protein-coding
127995	chr2	46978521	46979050	+	0	NA	intron (NM_020458, intron 4 of 19)	intron (NM_020458, intron 4 of 19)	-36930	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
188331	chr5	151234751	151235250	+	0	NA	Intergenic	Intergenic	-10908	NM_015621	26112		NM_015621	ENSG00000198624	CCDC69	-	coiled-coil domain containing 69	protein-coding
2211	chr1	8712101	8712300	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	105440	NM_012102	473		NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
10370	chr1	64955071	64955600	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	11214	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
202896	chr6	159996921	159997380	+	0	NA	intron (NM_000876, intron 2 of 47)	L1PA17|LINE|L1	10514	NR_047511	100271873		NR_047511	ENSG00000268257	AIRN	AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088	antisense of IGF2R non-protein coding RNA	ncRNA
42721	chr11	72686851	72687680	+	0	NA	intron (NR_161388, intron 28 of 29)	L2b|LINE|L2	-12843	NM_002599	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
88606	chr16	85603351	85604030	+	0	NA	Intergenic	AluJb|SINE|Alu	-7719	NM_001134473	23199		NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
227145	chr9	86291701	86292200	+	0	NA	intron (NM_024617, intron 26 of 26)	L1ME3Cz|LINE|L1	-9412	NM_030940	81689		NM_030940	ENSG00000135070	ISCA1	HBLD2|ISA1|MMDS5|hIscA|hIscA1	iron-sulfur cluster assembly 1	protein-coding
65215	chr14	49774171	49774330	+	0	NA	intron (NM_014315, intron 2 of 12)	intron (NM_014315, intron 2 of 12)	6097	NM_014315	23588		NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding
202437	chr6	157984701	157985100	+	0	NA	intron (NM_003898, intron 1 of 26)	intron (NM_003898, intron 1 of 26)	3037	NM_003898	8871		NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding
30856	chr10	86584151	86584450	+	0	NA	Intergenic	Intergenic	-62508	NM_015045	23063		NM_015045	ENSG00000062650	WAPL	FOE|KIAA0261|WAPAL	WAPL cohesin release factor	protein-coding
85623	chr16	54282321	54282580	+	0	NA	TTS (NM_024336)	TTS (NM_024336)	4337	NM_024336	79191		NM_024336	ENSG00000177508	IRX3	IRX-1|IRXB1	iroquois homeobox 3	protein-coding
132439	chr2	105840851	105841380	+	0	NA	intron (NM_001004722, intron 2 of 3)	LTR34|LTR|ERV1	-10732	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
62573	chr13	99977551	99977850	+	0	NA	Intergenic	Intergenic	-4084	NM_007129	7546		NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
44593	chr11	108337301	108337500	+	0	NA	intron (NM_000051, intron 56 of 62)	intron (NM_000051, intron 56 of 62)	113871	NM_001351836	472		NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding
226755	chr9	76402971	76403780	+	0	NA	Intergenic	Intergenic	4776	NR_026890	653162		NR_026890		RPSAP9	LAMR1P9|RPSA_20_986	ribosomal protein SA pseudogene 9	pseudo
184713	chr5	109398951	109399350	+	0	NA	intron (NM_014819, intron 1 of 9)	AluSx|SINE|Alu	10824	NM_014819	9867		NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding
233746	chrX	1385871	1386330	+	0	NA	TTS (NM_001636)	TTS (NM_001636)	6013	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
162721	chr3	49012651	49013480	+	0	NA	exon (NM_018031, exon 2 of 6)	exon (NM_018031, exon 2 of 6)	5460	NM_001320547	11180		NM_018031	ENSG00000178252	WDR6	Trm734	WD repeat domain 6	protein-coding
2682	chr1	10553121	10553580	+	0	NA	intron (NM_004565, intron 3 of 8)	intron (NM_004565, intron 3 of 8)	78400	NM_004565	5195		NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding
221174	chr8	120421701	120421900	+	0	NA	intron (NM_014078, intron 4 of 6)	intron (NM_014078, intron 4 of 6)	23350	NM_014078	28998		NM_014078	ENSG00000172172	MRPL13	L13|L13A|L13mt|RPL13|RPML13|uL13m	mitochondrial ribosomal protein L13	protein-coding
107008	chr18	32066851	32067330	+	0	NA	intron (NM_017831, intron 5 of 5)	AluY|SINE|Alu	-24784	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
73061	chr15	40905071	40905430	+	0	NA	Intergenic	AluSz|SINE|Alu	-1559	NR_135836	105370943		NR_135836		LOC105370943	-	uncharacterized LOC105370943	ncRNA
168077	chr3	138173451	138173550	+	0	NA	intron (NM_016216, intron 2 of 7)	intron (NM_016216, intron 2 of 7)	1421	NM_016216	51163		NM_016216	ENSG00000138231	DBR1	XGIP	debranching RNA lariats 1	protein-coding
135837	chr2	170713251	170714030	+	0	NA	non-coding (NR_027433, exon 1 of 1)	non-coding (NR_027433, exon 1 of 1)	927	NR_027433	440925		NM_001013712	ENSG00000222033	LINC01124	-	long intergenic non-protein coding RNA 1124	ncRNA
217927	chr8	38076021	38077080	+	0	NA	Intergenic	MER4D|LTR|ERV1	-28943	NM_001282272	9070		NM_004674	ENSG00000129691	ASH2L	ASH2|ASH2L1|ASH2L2|Bre2	ASH2 like, histone lysine methyltransferase complex subunit	protein-coding
3593	chr1	16227601	16228830	+	0	NA	Intergenic	Intergenic	8968	NM_030907	79363		NM_030907	ENSG00000132881	CPLANE2	C1orf89|RSG1	ciliogenesis and planar polarity effector complex subunit 2	protein-coding
205839	chr7	24897001	24897200	+	0	NA	intron (NM_015550, intron 1 of 22)	G-rich|Low_complexity|Low_complexity	-4479	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
9151	chr1	45520451	45520780	+	0	NA	intron (NM_001202431, intron 1 of 5)	AluSx|SINE|Alu	1269	NM_181697	5052		NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding
112122	chr19	5598871	5599430	+	0	NA	intron (NM_014649, intron 12 of 20)	intron (NM_014649, intron 12 of 20)	23626	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
42883	chr11	73350851	73351680	+	0	NA	intron (NM_014786, intron 2 of 20)	intron (NM_014786, intron 2 of 20)	-25134	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
46718	chr11	128866801	128867580	+	0	NA	5' UTR (NM_153767, exon 1 of 4)	5' UTR (NM_153767, exon 1 of 4)	106	NM_153765	3758		NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium inwardly rectifying channel subfamily J member 1	protein-coding
216863	chr8	22620951	22621050	+	0	NA	non-coding (NR_033902, exon 21 of 21)	non-coding (NR_033902, exon 21 of 21)	15958	NM_021174	57805		NM_021174	ENSG00000158941	CCAR2	DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC	cell cycle and apoptosis regulator 2	protein-coding
65654	chr14	52350721	52351230	+	0	NA	Intergenic	Intergenic	36663	NM_000956	5732		NM_000956	ENSG00000125384	PTGER2	EP2	prostaglandin E receptor 2	protein-coding
108970	chr18	79581051	79581170	+	0	NA	intron (NR_148949, intron 1 of 3)	intron (NR_148949, intron 1 of 3)	1828	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
143916	chr20	32623871	32624230	+	0	NA	Intergenic	Intergenic	36571	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
167521	chr3	129277671	129279300	+	0	NA	promoter-TSS (NM_001363881)	promoter-TSS (NM_001363881)	-347	NM_001370345	56941		NM_020187	ENSG00000183624	HMCES	C3orf37|DC12|SRAPD1	5-hydroxymethylcytosine binding, ES cell specific	protein-coding
204958	chr7	6366651	6366950	+	0	NA	Intergenic	AluSx|SINE|Alu	-7727	NM_006908	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
200390	chr6	134307971	134308200	+	0	NA	intron (NM_001143676, intron 1 of 13)	intron (NM_001143676, intron 1 of 13)	9973	NM_001143676	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
208018	chr7	55569071	55571050	+	0	NA	intron (NM_001321244, intron 1 of 5)	intron (NM_001321244, intron 1 of 5)	1808	NM_001321250	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
20485	chr1	198638251	198638350	+	0	NA	promoter-TSS (NM_001267798)	promoter-TSS (NM_001267798)	-668	NM_080921	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
172829	chr4	3136551	3136650	+	0	NA	intron (NM_002111, intron 21 of 66)	L1ME4a|LINE|L1	61919	NM_002111	3064		NM_002111	ENSG00000197386	HTT	HD|IT15|LOMARS	huntingtin	protein-coding
223194	chr8	143572501	143574330	+	0	NA	promoter-TSS (NM_001100878).2	promoter-TSS (NM_001100878).2	-643	NM_001100878	642475		NM_001100878	ENSG00000204839	MROH6	C8orf73	maestro heat like repeat family member 6	protein-coding
188496	chr5	154815101	154815300	+	0	NA	3' UTR (NM_001367717, exon 19 of 19)	3' UTR (NM_001367717, exon 19 of 19)	-14258	NR_039667	100616306		NR_039667	ENSG00000263361	MIR378H	-	microRNA 378h	ncRNA
170547	chr3	186780251	186780700	+	0	NA	Intergenic	Intergenic	-3102	NM_001967	1974		NM_001967	ENSG00000156976	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|NEDHSS|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
12559	chr1	108695501	108696250	+	0	NA	intron (NM_001349764, intron 2 of 5)	intron (NM_001349764, intron 2 of 5)	3565	NM_001349759	55119		NM_018061	ENSG00000134186	PRPF38B	NET1	pre-mRNA processing factor 38B	protein-coding
215589	chr7	158862901	158864780	+	0	NA	intron (NM_001350917, intron 1 of 25)	CpG	7282	NM_001350917	55112		NM_018051	ENSG00000126870	DYNC2I1	CFAP163|DIC6|FAP163|SRPS6|SRTD8|WDR60	dynein 2 intermediate chain 1	protein-coding
135004	chr2	153403471	153403630	+	0	NA	Intergenic	L1PA2|LINE|L1	75212	NM_019845	56475		NM_019845	ENSG00000177519	RPRM	REPRIMO	reprimo, TP53 dependent G2 arrest mediator homolog	protein-coding
187217	chr5	140709501	140709700	+	0	NA	Intergenic	Intergenic	-1676	NR_026703	56664		NR_026703	ENSG00000199990	VTRNA1-1	HVG1|VAULTRC1|VR1|hvg-1|vRNA	vault RNA 1-1	ncRNA
201088	chr6	142818271	142818430	+	0	NA	intron (NM_006734, intron 2 of 9)	intron (NM_006734, intron 2 of 9)	126826	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
204608	chr7	5356101	5356680	+	0	NA	intron (NM_001080495, intron 16 of 29)	CpG	67156	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
27421	chr10	31479751	31480050	+	0	NA	intron (NM_001323675, intron 2 of 6)	intron (NM_001323675, intron 2 of 6)	-80145	NM_001368169	100505502		NM_001368169	ENSG00000285781	LOC100505502	-	POM121 transmembrane nucleoporin like, pseudogene	pseudo
5320	chr1	25235951	25236050	+	0	NA	Intergenic	AluY|SINE|Alu	-3498	NM_207170	25949		NM_015484	ENSG00000117614	SYF2	CBPIN|NTC31|P29|fSAP29	SYF2 pre-mRNA splicing factor	protein-coding
175427	chr4	71006151	71006850	+	0	NA	intron (NM_000788, intron 2 of 6)	MER41B|LTR|ERV1	12851	NM_000788	1633		NM_000788	ENSG00000156136	DCK	-	deoxycytidine kinase	protein-coding
13035	chr1	111222861	111223380	+	0	NA	Intergenic	Intergenic	-4539	NM_001025197	1117		NM_004000	ENSG00000064886	CHI3L2	CHIL2|YKL-39|YKL39	chitinase 3 like 2	protein-coding
68927	chr14	91376171	91376330	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	41570	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
221620	chr8	125696571	125697400	+	0	NA	Intergenic	Intergenic	254212	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
115166	chr19	14423301	14424100	+	0	NA	Intergenic	Intergenic	-4317	NR_046366	10212		NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding
134890	chr2	148989821	148990120	+	0	NA	intron (NM_004522, intron 15 of 25)	intron (NM_004522, intron 15 of 25)	42095	NR_111932	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
148598	chr21	5118001	5119100	+	0	NA	intron (NR_135220, intron 5 of 5)	intron (NR_135220, intron 5 of 5)	9819	NM_001363761	102724023		NM_001363758	ENSG00000280071	LOC102724023	GATD3B|KNP-I	glutamine amidotransferase class 1 domain containing 3B	protein-coding
34921	chr11	418151	419350	+	0	NA	exon (NM_001012302, exon 22 of 23)	exon (NM_001012302, exon 22 of 23)	-1353	NM_001135053	59307		NM_021805	ENSG00000185187	SIGIRR	IL-1R8|TIR8	single Ig and TIR domain containing	protein-coding
135331	chr2	160374921	160375180	+	0	NA	intron (NM_016836, intron 1 of 13)	MIR3|SINE|MIR	32832	NR_039946	100616364		NR_039946	ENSG00000283734	MIR4785	mir-4785	microRNA 4785	ncRNA
121126	chr19	46016401	46017480	+	0	NA	intron (NM_001267723, intron 10 of 13)	intron (NM_001267723, intron 10 of 13)	-1992	NR_030412	768217		NR_030412	ENSG00000211580	MIR769	MIRN769|hsa-mir-769|mir-769	microRNA 769	ncRNA
215660	chr8	545651	545750	+	0	NA	promoter-TSS (NM_001256113)	promoter-TSS (NM_001256113)	80	NM_175075	157695		NM_175075	ENSG00000180190	TDRP	C8orf42|Inm01|TDRP1|TDRP2	testis development related protein	protein-coding
49216	chr12	18085951	18086080	+	0	NA	intron (NM_024730, intron 3 of 5)	AluY|SINE|Alu	4178	NR_104413	79785		NM_024730	ENSG00000111404	RERGL	-	RERG like	protein-coding
105209	chr17	82326371	82326850	+	0	NA	intron (NM_003004, intron 2 of 4)	AluJb|SINE|Alu	7156	NM_003004	6398		NM_003004	ENSG00000141574	SECTM1	K12|SECTM	secreted and transmembrane 1	protein-coding
113641	chr19	10336151	10336930	+	0	NA	intron (NM_001320605, intron 2 of 5)	AluSz6|SINE|Alu	-3011	NM_001366174	125950		NM_133452	ENSG00000161847	RAVER1	-	ribonucleoprotein, PTB binding 1	protein-coding
235207	chrX	41354971	41357030	+	0	NA	intron (NR_126093, intron 17 of 18)	L1MD2|LINE|L1	21834	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
197455	chr6	75208671	75209530	+	0	NA	Intergenic	Intergenic	-3047	NM_080645	1303		NM_004370	ENSG00000111799	COL12A1	BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2	collagen type XII alpha 1 chain	protein-coding
41974	chr11	67367901	67368180	+	0	NA	intron (NM_001166212, intron 1 of 2)	intron (NM_001166212, intron 1 of 2)	5558	NM_013246	23529		NM_013246	ENSG00000175505	CLCF1	BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6	cardiotrophin like cytokine factor 1	protein-coding
55521	chr12	105235501	105236850	+	0	NA	promoter-TSS (NM_001251904)	promoter-TSS (NM_001251904)	-1	NM_018171	55198		NM_018171	ENSG00000136044	APPL2	DIP13B	adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2	protein-coding
51529	chr12	52303321	52303580	+	0	NA	intron (NM_001320198, intron 4 of 10)	L3b|LINE|CR1	-11916	NM_002281	3887		NM_002281	ENSG00000205426	KRT81	HB1|Hb-1|K81|KRTHB1|MLN137|ghHkb1|hHAKB2-1	keratin 81	protein-coding
168226	chr3	141305201	141306080	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	-18546	NM_001080412	253461		NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding
58650	chr12	132519171	132519930	+	0	NA	intron (NM_001382740, intron 2 of 11)	intron (NM_001382740, intron 2 of 11)	14144	NM_001382742	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
37085	chr11	12964001	12964300	+	0	NA	Intergenic	Intergenic	25398	NR_038904	100506305		NR_038904	ENSG00000251381	LINC00958	BLACAT2	long intergenic non-protein coding RNA 958	ncRNA
79444	chr16	711571	712150	+	0	NA	Intergenic	Intergenic	-3258	NM_024042	79006		NM_024042	ENSG00000103260	METRN	C16orf23|c380A1.2	meteorin, glial cell differentiation regulator	protein-coding
169936	chr3	179020301	179020700	+	0	NA	non-coding (NR_164720, exon 6 of 6)	non-coding (NR_164720, exon 6 of 6)	48842	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
123944	chr19	55383101	55384600	+	0	NA	exon (NM_001190764, exon 1 of 2)	exon (NM_001190764, exon 1 of 2)	442	NM_001190764	388564		NM_001190764	ENSG00000233493	TMEM238	-	transmembrane protein 238	protein-coding
80436	chr16	2645121	2645850	+	0	NA	non-coding (NR_024492, exon 1 of 1)	non-coding (NR_024492, exon 1 of 1)	6503	NR_024492	645644		NM_001039907		FLJ42627	-	uncharacterized LOC645644	ncRNA
36323	chr11	3867971	3868130	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	11988	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
224221	chr9	5624871	5625030	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-4157	NM_020829	57589		NM_020829	ENSG00000107036	RIC1	CATIFA|CIP150|KIAA1432|bA207C16.1	RIC1 homolog, RAB6A GEF complex partner 1	protein-coding
188837	chr5	159106371	159107180	+	0	NA	intron (NR_109890, intron 1 of 2)	CpG	6292	NR_109890	101927740		NR_109890	ENSG00000245812	LINC02202	-	long intergenic non-protein coding RNA 2202	ncRNA
18137	chr1	160746151	160746450	+	0	NA	intron (NM_001282590, intron 1 of 5)	ORSL|DNA|hAT-Tip100	7053	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
59602	chr13	27636701	27637200	+	0	NA	intron (NM_152705, intron 1 of 2)	intron (NM_152705, intron 1 of 2)	15058	NM_015972	51082		NM_015972	ENSG00000186184	POLR1D	AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2	RNA polymerase I and III subunit D	protein-coding
193090	chr6	28865771	28867180	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2798	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
77316	chr15	82442251	82442750	+	0	NA	TTS (NR_120378)	TTS (NR_120378)	2369	NR_120378	102724034		NR_120378		LOC102724034	-	uncharacterized LOC102724034	ncRNA
74840	chr15	63507871	63508730	+	0	NA	intron (NR_046342, intron 1 of 15)	intron (NR_046342, intron 1 of 15)	3707	NR_046341	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
219311	chr8	70114601	70115000	+	0	NA	intron (NM_001321713, intron 21 of 21)	intron (NM_001321713, intron 21 of 21)	-43548	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
7895	chr1	36553821	36554100	+	0	NA	Intergenic	Intergenic	-70646	NM_156039	1441		NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding
36475	chr11	6231351	6231730	+	0	NA	intron (NM_001098794, intron 1 of 11)	AluSz|SINE|Alu	3096	NM_032127	84067		NM_032127	ENSG00000051009	FHIP1B	C11orf56|FAM160A2|FHIP	FHF complex subunit HOOK interacting protein 1B	protein-coding
30021	chr10	73785001	73786850	+	0	NA	non-coding (NR_160292, exon 1 of 27)	non-coding (NR_160292, exon 1 of 27)	301	NM_015037	23053		NM_015037	ENSG00000214655	ZSWIM8	KIAA0913	zinc finger SWIM-type containing 8	protein-coding
129712	chr2	70861801	70862200	+	0	NA	Intergenic	Intergenic	-25871	NR_126384	104355141		NR_126384	ENSG00000237751	LINC01143	-	long intergenic non-protein coding RNA 1143	ncRNA
53076	chr12	57729501	57729980	+	0	NA	exon (NM_001122772, exon 13 of 19)	exon (NM_001122772, exon 13 of 19)	3500	NR_027032	100130776		NR_027032	ENSG00000255737	AGAP2-AS1	PUNISHER	AGAP2 antisense RNA 1	ncRNA
215948	chr8	8348751	8348930	+	0	NA	intron (NM_001369759, intron 3 of 5)	intron (NM_001369759, intron 3 of 5)	37404	NM_001369759	157285		NM_001080826	ENSG00000275342	PRAG1	NACK|PEAK2|PRAGMIN|SGK223	PEAK1 related, kinase-activating pseudokinase 1	protein-coding
21584	chr1	206481451	206481950	+	0	NA	intron (NM_001193322, intron 13 of 20)	intron (NM_001193322, intron 13 of 20)	6897	NR_106919	102466202		NR_106919	ENSG00000278465	MIR6769B	hsa-mir-6769b	microRNA 6769b	ncRNA
110484	chr19	2031751	2033030	+	0	NA	Intergenic	Intergenic	-16676	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
157260	chr22	43883071	43883480	+	0	NA	intron (NM_001371410, intron 7 of 8)	L2b|LINE|L2	8738	NM_138814	150379		NM_138814	ENSG00000100341	PNPLA5	GS2L|dJ388M5|dJ388M5.4	patatin like phospholipase domain containing 5	protein-coding
156975	chr22	42473371	42473830	+	0	NA	Intergenic	MER65-int|LTR|ERV1	-26979	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
123022	chr19	51123321	51124200	+	0	NA	Intergenic	Intergenic	-1120	NM_001198558	27180		NM_014441	ENSG00000129450	SIGLEC9	CD329|CDw329|FOAP-9|OBBP-LIKE|siglec-9	sialic acid binding Ig like lectin 9	protein-coding
107464	chr18	46916521	46918150	+	0	NA	promoter-TSS (NM_001353906)	promoter-TSS (NM_001353906)	172	NM_001354034	9063		NM_004671	ENSG00000078043	PIAS2	ARIP3|DIP|MIZ1|PIASX|SIZ2|ZMIZ4	protein inhibitor of activated STAT 2	protein-coding
7597	chr1	35195771	35195930	+	0	NA	Intergenic	L2a|LINE|L2	-2705	NM_005066	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
39308	chr11	58675471	58675880	+	0	NA	Intergenic	Intergenic	53010	NM_000614	1270		NM_000614	ENSG00000242689	CNTF	HCNTF	ciliary neurotrophic factor	protein-coding
66566	chr14	63296101	63296300	+	0	NA	Intergenic	Intergenic	22735	NM_145171	122876		NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone subunit beta 5	protein-coding
187030	chr5	139791871	139792600	+	0	NA	Intergenic	Intergenic	-3573	NM_032289	84249		NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
41627	chr11	66468821	66469080	+	0	NA	intron (NM_145065, intron 3 of 7)	MIR|SINE|MIR	2045	NM_145065	246330		NM_145065	ENSG00000174516	PELI3	-	pellino E3 ubiquitin protein ligase family member 3	protein-coding
178120	chr4	141634951	141635250	+	0	NA	Intergenic	Charlie17b|DNA|hAT-Charlie	-1483	NM_000585	3600		NM_000585	ENSG00000164136	IL15	IL-15	interleukin 15	protein-coding
233779	chrX	1431971	1432480	+	0	NA	intron (NM_001173473, intron 6 of 12).2	CpG	20684	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
60702	chr13	43968361	43968680	+	0	NA	Intergenic	CpG	-53815	NR_026955	121838		NR_026955		NRAD1	LINC00284|NCRNA00284	non-coding RNA in the aldehyde dehydrogenase 1A pathway	ncRNA
103777	chr17	78996121	78996580	+	0	NA	intron (NM_001159772, intron 4 of 5)	intron (NM_001159772, intron 4 of 5)	13414	NM_001159772	124583		NM_138793	ENSG00000171302	CANT1	DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
236717	chrX	78024651	78024960	+	0	NA	intron (NM_000052, intron 14 of 22)	L1PA15-16|LINE|L1	-55167	NM_001029891	441531		NM_001029891	ENSG00000226784	PGAM4	PGAM-B|PGAM1|PGAM3|dJ1000K24.1	phosphoglycerate mutase family member 4	protein-coding
137872	chr2	200834171	200834750	+	0	NA	Intergenic	AluY|SINE|Alu	22074	NM_001207068	9689		NM_014670	ENSG00000082153	BZW1	5MP2|BZAP45|Nbla10236	basic leucine zipper and W2 domains 1	protein-coding
106719	chr18	23484121	23484380	+	0	NA	Intergenic	Intergenic	-19220	NM_001276342	29919		NM_013326	ENSG00000141452	RMC1	C18orf8|HsT2591|MIC1|Mic-1|WDR98	regulator of MON1-CCZ1	protein-coding
181801	chr5	52469301	52469900	+	0	NA	Intergenic	Intergenic	-318316	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
53283	chr12	64384771	64385630	+	0	NA	intron (NM_001099676, intron 1 of 10)	intron (NM_001099676, intron 1 of 10)	5558	NM_001170633	115749		NM_001099676	ENSG00000185306	C12orf56	-	chromosome 12 open reading frame 56	protein-coding
147261	chr20	57433681	57434700	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-41134	NR_149006	100291105		NR_149006		RBM38-AS1	-	RBM38 antisense RNA 1	ncRNA
209501	chr7	76947051	76947150	+	0	NA	Intergenic	AluSp|SINE|Alu	-33722	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
32447	chr10	102630221	102630480	+	0	NA	3' UTR (NM_016169, exon 12 of 12)	3' UTR (NM_016169, exon 12 of 12)	-14129	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
119000	chr19	38892151	38892250	+	0	NA	intron (NR_034146, intron 2 of 13)	AluSx|SINE|Alu	1955	NR_034146	22933		NM_012237	ENSG00000068903	SIRT2	SIR2|SIR2L|SIR2L2	sirtuin 2	protein-coding
17438	chr1	156674651	156675400	+	0	NA	intron (NM_006617, intron 2 of 3)	intron (NM_006617, intron 2 of 3)	2382	NM_006617	10763		NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding
65333	chr14	50222821	50223430	+	0	NA	intron (NM_006939, intron 1 of 22)	L2a|LINE|L2	8453	NM_006939	6655		NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
55670	chr12	107373421	107373950	+	0	NA	intron (NM_001347944, intron 1 of 14)	MIR3|SINE|MIR	53097	NM_001347944	121551		NM_152322	ENSG00000151136	ABTB3	ABTB2B|BTBD11	ankyrin repeat and BTB domain containing 3	protein-coding
145433	chr20	43468051	43468250	+	0	NA	Intergenic	AluSx|SINE|Alu	10254	NM_006275	6431		NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding
144035	chr20	33552571	33552930	+	0	NA	intron (NM_001032999, intron 1 of 10)	L2b|LINE|L2	-9615	NM_005093	9139		NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein-coding
223929	chr9	613721	614000	+	0	NA	intron (NM_001256877, intron 2 of 12)	intron (NM_001256877, intron 2 of 12)	-72907	NM_001354336	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
127482	chr2	42240921	42241180	+	0	NA	intron (NM_019063, intron 1 of 22)	AluSz|SINE|Alu	-70819	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
212406	chr7	128134351	128134650	+	0	NA	Intergenic	AluSq2|SINE|Alu	52639	NR_030324	693178		NR_030324	ENSG00000207588	MIR593	MIRN593|hsa-mir-593	microRNA 593	ncRNA
39742	chr11	61824201	61824400	+	0	NA	intron (NM_001281502, intron 1 of 11)	AluSx|SINE|Alu	-4000	NM_004265	9415		NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
163394	chr3	50505851	50506650	+	0	NA	Intergenic	Intergenic	-2006	NM_001291101	9254		NM_006030	ENSG00000007402	CACNA2D2	CACNA2D|CASVDD	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein-coding
92184	chr17	7823651	7823830	+	0	NA	intron (NM_020877, intron 74 of 85)	intron (NM_020877, intron 74 of 85)	-16166	NM_001348716	23135		NM_001080424	ENSG00000132510	KDM6B	JMJD3|NEDCFSA|NEDSST	lysine demethylase 6B	protein-coding
170825	chr3	189958471	189958880	+	0	NA	intron (NM_001134418, intron 14 of 14)	MER20|DNA|hAT-Charlie	128753	NR_030642	100126340		NR_030642	ENSG00000216058	MIR944	MIRN944|hsa-mir-944|mir-944	microRNA 944	ncRNA
106687	chr18	23259971	23260950	+	0	NA	TTS (NM_001100619)	TTS (NM_001100619)	104635	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
236689	chrX	77742901	77743300	+	0	NA	intron (NM_138270, intron 1 of 33)	L1M2|LINE|L1	43116	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
28827	chr10	62370871	62371030	+	0	NA	intron (NR_104162, intron 1 of 3)	(AT)n|Simple_repeat|Simple_repeat	-3207	NM_199450	22891		NM_014951	ENSG00000138311	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
16461	chr1	154602271	154602850	+	0	NA	exon (NM_015841, exon 2 of 15)	exon (NM_015841, exon 2 of 15)	3693	NM_001193495	103		NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase RNA specific	protein-coding
151103	chr21	44855701	44855900	+	0	NA	intron (NM_004339, intron 4 of 5)	intron (NM_004339, intron 4 of 5)	17890	NM_004339	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
188468	chr5	154682321	154683680	+	0	NA	promoter-TSS (NM_001367713)	promoter-TSS (NM_001367713)	21	NM_001367713	23367		NM_015315	ENSG00000155506	LARP1	LARP|Lar1|Lhp1	La ribonucleoprotein 1, translational regulator	protein-coding
33488	chr10	119095521	119096230	+	0	NA	Intergenic	AluJb|SINE|Alu	-8238	NR_130122	404636		NM_207009	ENSG00000119979	DENND10	FAM45A	DENN domain containing 10	protein-coding
181665	chr5	50431171	50431330	+	0	NA	intron (NM_198449, intron 1 of 8)	intron (NM_198449, intron 1 of 8)	10038	NM_198449	133418		NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
101542	chr17	67988851	67989150	+	0	NA	Intergenic	AluSx1|SINE|Alu	4606	NM_181656	284018		NM_181655	ENSG00000186665	C17orf58	-	chromosome 17 open reading frame 58	protein-coding
42130	chr11	67628921	67629600	+	0	NA	intron (NM_181843, intron 1 of 2)	intron (NM_181843, intron 1 of 2)	677	NM_181843	254552		NM_181843	ENSG00000167799	NUDT8	-	nudix hydrolase 8	protein-coding
83149	chr16	23435351	23435730	+	0	NA	intron (NM_153603, intron 4 of 16)	intron (NM_153603, intron 4 of 16)	17649	NM_153603	91949		NM_153603	ENSG00000168434	COG7	CDG2E	component of oligomeric golgi complex 7	protein-coding
68674	chr14	90289451	90289550	+	0	NA	intron (NM_017970, intron 10 of 13)	intron (NM_017970, intron 10 of 13)	31561	NM_001330212	5700		NM_002802	ENSG00000100764	PSMC1	NEDGTH|P26S4|RPT2|S4|p56	proteasome 26S subunit, ATPase 1	protein-coding
119281	chr19	39671971	39672330	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-7224	NR_034156	400696		NM_207646	ENSG00000291086	LGALS17A	-	galectin 14 pseudogene	pseudo
60348	chr13	40791671	40791900	+	0	NA	intron (NM_014252, intron 1 of 6)	intron (NM_014252, intron 1 of 6)	2174	NM_014252	10166		NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|LNC-HC|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
16800	chr1	155553921	155554380	+	0	NA	intron (NM_018489, intron 1 of 27)	AluJo|SINE|Alu	-7892	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
236560	chrX	72273601	72274130	+	0	NA	exon (NM_001007, exon 5 of 7)	exon (NM_001007, exon 5 of 7)	3383	NM_001007	6191		NM_001007	ENSG00000198034	RPS4X	CCG2|DXS306|RPS4|S4|SCAR|SCR10|eS4	ribosomal protein S4 X-linked	protein-coding
164725	chr3	68810551	68810690	+	0	NA	intron (NM_001005527, intron 3 of 5)	L1PA4|LINE|L1	121927	NM_182522	151647		NM_182522	ENSG00000163377	TAFA4	FAM19A4|TAFA-4	TAFA chemokine like family member 4	protein-coding
155118	chr22	37626021	37626500	+	0	NA	intron (NM_001172688, intron 12 of 17)	intron (NM_001172688, intron 12 of 17)	-13409	NM_018957	23616		NM_018957	ENSG00000100092	SH3BP1	ARHGAP43	SH3 domain binding protein 1	protein-coding
148566	chr20	64285551	64286320	+	0	NA	Intergenic	TAR1|Satellite|telo	-4450	NR_040415	107126285		NR_040415		SEPTIN14P20	C20orf69|LINC00266-1|NCRNA00266|NCRNA00266-1|RBRP|SEPT14P20|bA476I15.3	septin 14 pseudogene 20	pseudo
115198	chr19	14469421	14469750	+	0	NA	intron (NM_002741, intron 16 of 21)	intron (NM_002741, intron 16 of 21)	5769	NM_000955	5731		NM_000955	ENSG00000160951	PTGER1	EP1	prostaglandin E receptor 1	protein-coding
68715	chr14	90756001	90756400	+	0	NA	intron (NM_001010854, intron 3 of 19)	intron (NM_001010854, intron 3 of 19)	58867	NR_135190	105370622		NR_135190	ENSG00000258716	LOC105370622	-	uncharacterized LOC105370622	ncRNA
76612	chr15	75442621	75443100	+	0	NA	intron (NM_001145357, intron 1 of 20)	AluSp|SINE|Alu	8830	NM_015477	25942		NM_015477	ENSG00000169375	SIN3A	CHR15DELq24|DEL15Q24|WITKOS	SIN3 transcription regulator family member A	protein-coding
78665	chr15	94430471	94430630	+	0	NA	intron (NM_001159643, intron 18 of 21)	AluSx1|SINE|Alu	74620	NM_001159644	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
66762	chr14	64527071	64527580	+	0	NA	intron (NM_014950, intron 2 of 2)	AluSx|SINE|Alu	13043	NR_110550	102723809		NR_110550	ENSG00000259116	HSPA2-AS1	-	HSPA2 and ZBTB1 antisense RNA 1	ncRNA
129516	chr2	69649601	69649830	+	0	NA	intron (NM_001320698, intron 1 of 14)	AluJb|SINE|Alu	5907	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
67299	chr14	69543701	69543950	+	0	NA	Intergenic	Intergenic	31046	NM_001271507	56936		NM_020181	ENSG00000267909	CCDC177	C14orf162|PLPL	coiled-coil domain containing 177	protein-coding
23170	chr1	226755521	226755980	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-16575	NM_002221	3707		NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
156641	chr22	41623871	41624900	+	0	NA	intron (NM_001288978, intron 2 of 11)	AluSz6|SINE|Alu	3090	NM_001469	2547		NM_001469	ENSG00000196419	XRCC6	CTC75|CTCBF|G22P1|KU70|ML8|TLAA	X-ray repair cross complementing 6	protein-coding
58417	chr12	131918601	131920250	+	0	NA	intron (NM_003565, intron 24 of 27)	intron (NM_003565, intron 24 of 27)	-9851	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
43643	chr11	85646421	85646700	+	0	NA	Intergenic	AluY|SINE|Alu	-1359	NM_001244735	84233		NM_032273	ENSG00000171202	TMEM126A	OPA7	transmembrane protein 126A	protein-coding
155220	chr22	37895301	37895500	+	0	NA	Intergenic	Intergenic	-10897	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
105424	chr17	82866321	82866680	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-26478	NM_024702	79755		NM_024702	ENSG00000141579	ZNF750	SLDPE|ZFP750	zinc finger protein 750	protein-coding
5899	chr1	26818551	26819000	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-7913	NM_032283	84243		NM_032283	ENSG00000204160	ZDHHC18	DHHC-18|DHHC18	zinc finger DHHC-type palmitoyltransferase 18	protein-coding
177838	chr4	127781571	127782350	+	0	NA	promoter-TSS (NM_014278)	promoter-TSS (NM_014278)	164	NM_001317381	22824		NM_014278	ENSG00000164070	HSPA4L	APG-1|APG1|HSPH3|Osp94	heat shock protein family A (Hsp70) member 4 like	protein-coding
181350	chr5	40440651	40440950	+	0	NA	Intergenic	Intergenic	-239115	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
129831	chr2	72770901	72771200	+	0	NA	intron (NR_135773, intron 1 of 21)	intron (NR_135773, intron 1 of 21)	54983	NM_001321730	23233		NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2|SEMDJL3	exocyst complex component 6B	protein-coding
17793	chr1	159798771	159799400	+	0	NA	Intergenic	Intergenic	-1427	NM_001284217	343413		NM_001004310	ENSG00000181036	FCRL6	FcRH6	Fc receptor like 6	protein-coding
13258	chr1	112713371	112713530	+	0	NA	intron (NM_005167, intron 2 of 9)	intron (NM_005167, intron 2 of 9)	1878	NM_005167	333926		NM_005167	ENSG00000155367	PPM1J	PP2C-zeta|PP2CZ|PP2Czeta|PPP2CZ	protein phosphatase, Mg2+/Mn2+ dependent 1J	protein-coding
183003	chr5	72318521	72319060	+	0	NA	intron (NM_001286751, intron 1 of 10)	AluSp|SINE|Alu	1450	NM_001286751	23107		NM_015084	ENSG00000113048	MRPS27	MRP-S27|S27mt|mS27	mitochondrial ribosomal protein S27	protein-coding
112246	chr19	5777301	5777700	+	0	NA	intron (NM_152784, intron 21 of 21)	intron (NM_152784, intron 21 of 21)	7246	NM_001134316	163154		NM_153359	ENSG00000212123	PRR22	-	proline rich 22	protein-coding
78690	chr15	95929401	95929600	+	0	NA	Intergenic	Intergenic	198341	NR_158193	105369212		NR_158193		LOC105369212	-	uncharacterized LOC105369212	ncRNA
193523	chr6	30587701	30588880	+	0	NA	intron (NM_001090, intron 19 of 23).3	L1ME4a|LINE|L1	3958	NR_030615	100126314		NR_030615	ENSG00000216101	MIR877	MIRN877|hsa-mir-877|miRNA877|mir-877	microRNA 877	ncRNA
100544	chr17	62546051	62546350	+	0	NA	intron (NM_001375269, intron 6 of 20)	AluJo|SINE|Alu	65087	NM_001284363	11011		NM_006852	ENSG00000146872	TLK2	HsHPK|MRD57|PKU-ALPHA	tousled like kinase 2	protein-coding
49524	chr12	25518651	25518750	+	0	NA	intron (NM_152590, intron 7 of 8)	intron (NM_152590, intron 7 of 8)	34583	NM_001256266	160492		NM_152590	ENSG00000152936	LMNTD1	IFLTD1|LMNARS1|PAS1C1	lamin tail domain containing 1	protein-coding
74134	chr15	55241371	55241530	+	0	NA	intron (NM_183234, intron 1 of 6)	intron (NM_183234, intron 1 of 6)	28836	NM_183234	5873		NM_004580	ENSG00000069974	RAB27A	GS2|HsT18676|RAB27|RAM	RAB27A, member RAS oncogene family	protein-coding
214459	chr7	150339521	150339780	+	0	NA	intron (NM_002889, intron 3 of 5)	intron (NM_002889, intron 3 of 5)	1979	NM_002889	5919		NM_002889	ENSG00000106538	RARRES2	HP10433|TIG2	retinoic acid receptor responder 2	protein-coding
232824	chr9	136730221	136731350	+	0	NA	Intergenic	AluSx|SINE|Alu	-2601	NR_024543	84973		NM_032887	ENSG00000233016	SNHG7	NCRNA00061	small nucleolar RNA host gene 7	ncRNA
15916	chr1	151714651	151715450	+	0	NA	intron (NM_007185, intron 1 of 12)	intron (NM_007185, intron 1 of 12)	1753	NM_001172649	11189		NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP Elav-like family member 3	protein-coding
238646	chrX	153981471	153982550	+	0	NA	promoter-TSS (NR_036175)	promoter-TSS (NR_036175)	-834	NR_036175	100422877		NR_036175	ENSG00000283694	MIR3202-2	mir-3202-2	microRNA 3202-2	ncRNA
196010	chr6	42012871	42013530	+	0	NA	intron (NM_001136017, intron 1 of 4)	L3|LINE|CR1	35694	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
145221	chr20	38912801	38913230	+	0	NA	intron (NM_001172735, intron 9 of 9)	AluSx1|SINE|Alu	-13402	NM_030919	81610		NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding
187854	chr5	147780371	147780530	+	0	NA	intron (NM_014790, intron 1 of 20)	intron (NM_014790, intron 1 of 20)	2278	NM_001282282	9832		NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding
146640	chr20	50286421	50286680	+	0	NA	Intergenic	Intergenic	-6170	NR_034124	284751		NM_001025463	ENSG00000203999	LINC01270	-	long intergenic non-protein coding RNA 1270	ncRNA
29687	chr10	72052201	72052400	+	0	NA	Intergenic	AluSx1|SINE|Alu	36251	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
138140	chr2	202307921	202308500	+	0	NA	Intergenic	Intergenic	15159	NR_003031	692058		NR_003031	ENSG00000238317	SNORD11	HBII-95	small nucleolar RNA, C/D box 11	snoRNA
60506	chr13	41338021	41338280	+	0	NA	intron (NM_024561, intron 9 of 19)	intron (NM_024561, intron 9 of 19)	-26112	NM_001354076	9617		NM_004294	ENSG00000120662	MTRF1	MRF1|MTTRF1|RF1	mitochondrial translation release factor 1	protein-coding
59979	chr13	32309371	32309530	+	0	NA	intron (NM_001136571, intron 4 of 5)	intron (NM_001136571, intron 4 of 5)	5913	NM_001136571	646799		NM_001136571	ENSG00000189167	ZAR1L	Z3CXXC7|ZAR2	zygote arrest 1 like	protein-coding
61354	chr13	50942151	50942250	+	0	NA	intron (NM_001142279, intron 5 of 9)	intron (NM_001142279, intron 5 of 9)	-31488	NR_046552	100874255		NR_046552		RNASEH2B-AS1	-	RNASEH2B antisense RNA 1	ncRNA
202525	chr6	158595221	158595650	+	0	NA	intron (NM_001376854, intron 6 of 15)	L1ME3A|LINE|L1	-14272	NR_106981	102465694		NR_106981	ENSG00000278571	MIR7161	hsa-mir-7161	microRNA 7161	ncRNA
130370	chr2	85266351	85266930	+	0	NA	intron (NM_031283, intron 3 of 11)	intron (NM_031283, intron 3 of 11)	52988	NR_136323	102724579		NR_136323		LOC102724579	-	uncharacterized LOC102724579	ncRNA
146996	chr20	53547751	53548050	+	0	NA	Intergenic	Intergenic	-4870	NR_110051	101927770		NR_110051		ZNF217-AS1	-	ZNF217 antisense RNA 1	ncRNA
24459	chr1	243848151	243849800	+	0	NA	intron (NM_001370074, intron 1 of 13)	intron (NM_001370074, intron 1 of 13)	1268	NM_005465	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
238990	chrX	155880771	155881780	+	0	NA	promoter-TSS (NR_033714).2	promoter-TSS (NR_033714).2	-70	NM_001145149	6845		NM_005638	ENSG00000124333	VAMP7	SYBL1|TI-VAMP|TIVAMP|VAMP-7	vesicle associated membrane protein 7	protein-coding
175902	chr4	80139901	80140300	+	0	NA	Intergenic	Intergenic	-45170	NM_020226	56978		NM_020226	ENSG00000152784	PRDM8	EPM10|KMT8D|PFM5	PR/SET domain 8	protein-coding
130845	chr2	87229101	87229450	+	0	NA	Intergenic	Intergenic	34489	NR_039928	100616370		NR_039928	ENSG00000264793	MIR4771-1	-	microRNA 4771-1	ncRNA
89221	chr16	88624971	88625130	+	0	NA	intron (NM_144604, intron 12 of 17)	intron (NM_144604, intron 12 of 17)	-13522	NM_013278	27189		NM_013278	ENSG00000124391	IL17C	CX2|IL-17C	interleukin 17C	protein-coding
226114	chr9	62899001	62899200	+	0	NA	non-coding (NR_126047, exon 2 of 2)	non-coding (NR_126047, exon 2 of 2)	-1013	NR_122076	403323		NM_203449		LERFS	-	lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting	ncRNA
39546	chr11	61114271	61114430	+	0	NA	intron (NM_014207, intron 1 of 10)	AluJb|SINE|Alu	11861	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
178218	chr4	142696521	142697330	+	0	NA	intron (NM_001385336, intron 2 of 26)	intron (NM_001385336, intron 2 of 26)	-136170	NM_001385339	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
10860	chr1	77975971	77976130	+	0	NA	intron (NR_146539, intron 1 of 22)	intron (NR_146539, intron 1 of 22)	3022	NR_146540	8880		NM_003902	ENSG00000162613	FUBP1	FBP|FUBP|hDH V	far upstream element binding protein 1	protein-coding
111482	chr19	3957751	3958280	+	0	NA	TTS (NM_001375658)	TTS (NM_001375658)	3497	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
48933	chr12	12713921	12715300	+	0	NA	Intergenic	Intergenic	-2758	NM_004064	1027		NM_004064	ENSG00000111276	CDKN1B	CDKN4|KIP1|MEN1B|MEN4|P27KIP1	cyclin dependent kinase inhibitor 1B	protein-coding
37959	chr11	34624021	34624480	+	0	NA	promoter-TSS (NM_001378045)	promoter-TSS (NM_001378045)	-7	NM_001378045	26298		NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
91784	chr17	7011171	7011530	+	0	NA	TTS (NM_000697)	TTS (NM_000697)	984	NR_040089	100506713		NR_040089	ENSG00000215067	ALOX12-AS1	-	ALOX12 antisense RNA 1	ncRNA
149544	chr21	33067451	33067750	+	0	NA	Intergenic	Intergenic	-2541	NM_138983	116448		NM_138983	ENSG00000184221	OLIG1	BHLHB6|BHLHE21	oligodendrocyte transcription factor 1	protein-coding
101746	chr17	70137471	70137630	+	0	NA	Intergenic	Intergenic	31852	NR_036534	400617		NR_036534	ENSG00000267365	KCNJ2-AS1	-	KCNJ2 antisense RNA 1	ncRNA
175652	chr4	76689121	76689780	+	0	NA	intron (NM_020859, intron 2 of 10)	CpG	113899	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
204345	chr7	2863471	2864180	+	0	NA	Intergenic	LTR78B|LTR|ERV1	-19517	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
154964	chr22	37268951	37269250	+	0	NA	Intergenic	L1MA5|LINE|L1	-13408	NM_013385	27128		NM_013385	ENSG00000100055	CYTH4	CYT4|DJ63G5.1|PSCD4|cytohesin-4	cytohesin 4	protein-coding
108858	chr18	79357121	79358250	+	0	NA	intron (NM_198531, intron 25 of 29)	intron (NM_198531, intron 25 of 29)	-38245	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
10401	chr1	65075251	65075950	+	0	NA	Intergenic	Intergenic	-7854	NM_001321852	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
10895	chr1	78839771	78839930	+	0	NA	Intergenic	Intergenic	166880	NM_022159	64123		NM_022159	ENSG00000162618	ADGRL4	ELTD1|ETL|KPG_003	adhesion G protein-coupled receptor L4	protein-coding
166087	chr3	109200201	109200400	+	0	NA	Intergenic	L1HS|LINE|L1	22135	NR_026767	677779		NM_001040054	ENSG00000214381	LINC00488	C3orf66	long intergenic non-protein coding RNA 488	ncRNA
41730	chr11	66665401	66666300	+	0	NA	intron (NM_001286135, intron 2 of 2)	intron (NM_001286135, intron 2 of 2)	12037	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
171288	chr3	195906051	195907600	+	0	NA	intron (NM_005781, intron 1 of 14)	intron (NM_005781, intron 1 of 14)	-1251	NR_145450	100128262		NR_145450		TNK2-AS1	-	TNK2 antisense RNA 1	ncRNA
204870	chr7	5856521	5857180	+	0	NA	Intergenic	AluSz|SINE|Alu	-23948	NM_001097622	654231		NM_001097622	ENSG00000122543	OCM	OCM1|OM|ONCM	oncomodulin	protein-coding
158492	chr3	535821	536080	+	0	NA	Intergenic	LTR12D|LTR|ERV1	-56155	NR_110118	101927215		NR_110118	ENSG00000224957	LINC01266	-	long intergenic non-protein coding RNA 1266	ncRNA
220096	chr8	94419751	94420650	+	0	NA	intron (NM_012415, intron 3 of 14)	intron (NM_012415, intron 3 of 14)	16744	NM_001205263	25788		NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B	protein-coding
118412	chr19	35757671	35758880	+	0	NA	promoter-TSS (NM_001367856)	promoter-TSS (NM_001367856)	99	NM_001039887	148137		NM_144692	ENSG00000167595	PROSER3	C19orf55	proline and serine rich 3	protein-coding
148762	chr21	8152651	8153750	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	-44420	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
130527	chr2	85618051	85618630	+	0	NA	intron (NM_006590, intron 1 of 12)	AluSg|SINE|Alu	2154	NM_001256725	10713		NM_006590	ENSG00000168883	USP39	65K|CGI-21|HSPC332|SAD1|SNRNP65	ubiquitin specific peptidase 39	protein-coding
200529	chr6	136247021	136247500	+	0	NA	intron (NM_138419, intron 2 of 7)	AluSx1|SINE|Alu	3051	NM_001318738	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
195781	chr6	40583621	40583880	+	0	NA	intron (NM_020737, intron 1 of 2)	intron (NM_020737, intron 1 of 2)	3614	NM_020737	57497		NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
226636	chr9	74245901	74246500	+	0	NA	Intergenic	Intergenic	-125331	NR_121182	101927358		NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA
166314	chr3	112689471	112689830	+	0	NA	Intergenic	Intergenic	-47439	NR_162092	113218483		NR_162092		MIR9900	-	microRNA 9900	ncRNA
132849	chr2	110853551	110853950	+	0	NA	intron (NM_001371254, intron 10 of 18)	intron (NM_001371254, intron 10 of 18)	121177	NM_001142807	55289		NM_018308	ENSG00000153093	ACOXL	ACOX4	acyl-CoA oxidase like	protein-coding
14686	chr1	145858051	145859400	+	0	NA	intron (NM_006099, intron 1 of 13)	CpG	356	NM_006099	10401		NM_006099	ENSG00000131788	PIAS3	ZMIZ5	protein inhibitor of activated STAT 3	protein-coding
196237	chr6	42878001	42878230	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-1501	NR_134563	285855		NM_198486	ENSG00000146223	RPL7L1	dJ475N16.4	ribosomal protein L7 like 1	protein-coding
202847	chr6	159761351	159763030	+	0	NA	promoter-TSS (NM_001322817)	promoter-TSS (NM_001322817)	91	NM_001322817	6648		NM_000636	ENSG00000291237	SOD2	GC1|GClnc1|IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2	protein-coding
146968	chr20	52494301	52494500	+	0	NA	Intergenic	Intergenic	-126438	NR_110038	101927700		NR_110038	ENSG00000234948	LINC01524	-	long intergenic non-protein coding RNA 1524	ncRNA
63740	chr14	21223471	21223630	+	0	NA	intron (NM_001077443, intron 4 of 7)	AluSz|SINE|Alu	-16650	NR_038971	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
126130	chr2	26086051	26087050	+	0	NA	intron (NM_016131, intron 1 of 5)	L1MB5|LINE|L1	52466	NM_016131	10890		NM_016131	ENSG00000084733	RAB10	-	RAB10, member RAS oncogene family	protein-coding
179669	chr4	190016151	190016600	+	0	NA	Intergenic	LTR2|LTR|ERV1	10881	NM_001005217	448831		NM_001005217	ENSG00000205097	FRG2	FRG2A	FSHD region gene 2	protein-coding
173774	chr4	17510421	17510880	+	0	NA	intron (NR_156494, intron 1 of 5)	intron (NR_156494, intron 1 of 5)	1440	NM_000320	5860		NM_000320	ENSG00000151552	QDPR	DHPR|HDHPR|PKU2|SDR33C1	quinoid dihydropteridine reductase	protein-coding
165561	chr3	101514151	101514450	+	0	NA	Intergenic	Intergenic	-1059	NM_001282804	57337		NM_020654	ENSG00000138468	SENP7	-	SUMO specific peptidase 7	protein-coding
28446	chr10	48809201	48809400	+	0	NA	TTS (NM_001370153)	TTS (NM_001370153)	115987	NM_001006939	474354		NM_001006939	ENSG00000165383	LRRC18	UNQ933|UNQ9338|VKGE9338	leucine rich repeat containing 18	protein-coding
217620	chr8	30015701	30016530	+	0	NA	Intergenic	Intergenic	-58767	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
184278	chr5	96775721	96775980	+	0	NA	3' UTR (NM_001040458, exon 19 of 19)	3' UTR (NM_001040458, exon 19 of 19)	32095	NM_001040458	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
205449	chr7	17138721	17139650	+	0	NA	Intergenic	Intergenic	-159467	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
177467	chr4	113727901	113728300	+	0	NA	intron (NM_001321585, intron 2 of 19)	L1ME2|LINE|L1	33638	NM_001321570	817		NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding
96429	chr17	40184221	40184680	+	0	NA	intron (NM_001303534, intron 3 of 14)	intron (NM_001303534, intron 3 of 14)	6980	NM_016339	51195		NM_016339	ENSG00000108352	RAPGEFL1	Link-GEFII	Rap guanine nucleotide exchange factor like 1	protein-coding
135447	chr2	161223051	161223400	+	0	NA	TTS (NR_110593)	TTS (NR_110593)	-21514	NR_110164	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
117126	chr19	19227121	19227580	+	0	NA	exon (NM_004386, exon 8 of 15)	exon (NM_004386, exon 8 of 15)	15392	NM_004386	1463		NM_004386	ENSG00000130287	NCAN	CSPG3	neurocan	protein-coding
36116	chr11	3092751	3092850	+	0	NA	intron (NM_145638, intron 17 of 20)	intron (NM_145638, intron 17 of 20)	-35377	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
220068	chr8	93917501	93918700	+	0	NA	intron (NM_001161780, intron 2 of 2)	intron (NM_001161780, intron 2 of 2)	1153	NM_001161779	54704		NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PDPC 1|PPM2A|PPM2C	pyruvate dehydrogenase phosphatase catalytic subunit 1	protein-coding
179580	chr4	185258221	185259000	+	0	NA	intron (NM_001378032, intron 2 of 19)	intron (NM_001378032, intron 2 of 19)	49053	NM_001378040	83891		NM_031953	ENSG00000109762	SNX25	MSTP043|SBBI31	sorting nexin 25	protein-coding
40751	chr11	64837101	64838600	+	0	NA	intron (NM_017525, intron 9 of 36)	intron (NM_017525, intron 9 of 36)	6803	NM_017525	55561		NM_017525	ENSG00000171219	CDC42BPG	DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma	CDC42 binding protein kinase gamma	protein-coding
176783	chr4	102504971	102505330	+	0	NA	intron (NM_001382625, intron 1 of 24)	intron (NM_001382625, intron 1 of 24)	-2664	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
77123	chr15	78992901	78993300	+	0	NA	intron (NM_002891, intron 21 of 27)	(TG)n|Simple_repeat|Simple_repeat	12560	NM_153815	5923		NM_002891	ENSG00000058335	RASGRF1	CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1	Ras protein specific guanine nucleotide releasing factor 1	protein-coding
42844	chr11	73141801	73143980	+	0	NA	promoter-TSS (NM_014824)	promoter-TSS (NM_014824)	-572	NM_014824	9873		NM_014824	ENSG00000137478	FCHSD2	NWK|NWK1|SH3MD3	FCH and double SH3 domains 2	protein-coding
173673	chr4	14924221	14925680	+	0	NA	intron (NR_038857, intron 7 of 7)	intron (NR_038857, intron 7 of 7)	-36781	NR_126435	201853		NR_126435	ENSG00000248360	LINC00504	-	long intergenic non-protein coding RNA 504	ncRNA
183309	chr5	76625501	76625700	+	0	NA	intron (NM_001285462, intron 2 of 23)	intron (NM_001285462, intron 2 of 23)	-2197	NM_004101	2151		NM_004101	ENSG00000164220	F2RL2	PAR-3|PAR3	coagulation factor II thrombin receptor like 2	protein-coding
81093	chr16	4355001	4356280	+	0	NA	intron (NM_001351729, intron 26 of 27)	AluY|SINE|Alu	-4319	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
32826	chr10	110003551	110003850	+	0	NA	intron (NM_001320591, intron 1 of 15)	MIRc|SINE|MIR	-2247	NM_001320593	120		NM_001121	ENSG00000148700	ADD3	ADDL|CPSQ3	adducin 3	protein-coding
1737	chr1	5979571	5979930	+	0	NA	intron (NR_111987, intron 2 of 32)	AluJb|SINE|Alu	12675	NR_111987	261734		NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding
113975	chr19	10815101	10816680	+	0	NA	intron (NM_001005362, intron 14 of 19)	intron (NM_001005362, intron 14 of 19)	1606	NR_029586	406976		NR_029586	ENSG00000207752	MIR199A1	MIR-199-s|MIRN199A1|mir-199a-1	microRNA 199a-1	ncRNA
77788	chr15	86653571	86654330	+	0	NA	intron (NM_152336, intron 22 of 24)	intron (NM_152336, intron 22 of 24)	-278930	NR_135682	105370954		NR_135682	ENSG00000259636	LOC105370954	-	uncharacterized LOC105370954	ncRNA
57118	chr12	121128051	121128150	+	0	NA	Intergenic	Intergenic	-4776	NM_002562	5027		NM_002562	ENSG00000089041	P2RX7	P2X7	purinergic receptor P2X 7	protein-coding
45327	chr11	118206301	118207100	+	0	NA	intron (NR_104479, intron 3 of 8)	intron (NR_104479, intron 3 of 8)	6246	NM_001286571	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
207892	chr7	50406321	50407500	+	0	NA	Intergenic	Intergenic	43440	NM_001346558	63979		NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding
224433	chr9	15300971	15301330	+	0	NA	intron (NM_152574, intron 1 of 19)	intron (NM_152574, intron 1 of 19)	6210	NM_001168340	158219		NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding
176684	chr4	100681471	100681830	+	0	NA	Intergenic	L1MEc|LINE|L1	-6537	NR_046811	100874275		NR_046811	ENSG00000250223	LINC01216	EMCN-IT3	long intergenic non-protein coding RNA 1216	ncRNA
98442	chr17	46877321	46877780	+	0	NA	3' UTR (NM_003396, exon 4 of 4)	3' UTR (NM_003396, exon 4 of 4)	25967	NM_003396	7484		NM_003396	ENSG00000158955	WNT9B	WNT14B|WNT15	Wnt family member 9B	protein-coding
62605	chr13	100483701	100484300	+	0	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	-2985	NR_047686	100885777		NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
233797	chrX	1448951	1449630	+	0	NA	intron (NM_001173473, intron 1 of 12).2	intron (NM_001173473, intron 1 of 12).2	3619	NM_001173474	8623		NM_004192	ENSG00000169093	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase like	protein-coding
225035	chr9	33151901	33152330	+	0	NA	intron (NM_001378495, intron 1 of 5)	AluSx1|SINE|Alu	-14833	NR_108109	101929639		NR_108108		B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA
103799	chr17	79078821	79079080	+	0	NA	intron (NM_001042573, intron 3 of 13)	intron (NM_001042573, intron 3 of 13)	4126	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
215355	chr7	157382701	157383300	+	0	NA	intron (NM_005494, intron 6 of 7)	AluSz6|SINE|Alu	45996	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
61633	chr13	73825151	73825830	+	0	NA	intron (NM_007249, intron 4 of 7)	intron (NM_007249, intron 4 of 7)	261246	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
57811	chr12	123140371	123141130	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	10340	NM_020845	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
51370	chr12	51832521	51833180	+	0	NA	promoter-TSS (NM_001013690)	promoter-TSS (NM_001013690)	-933	NM_001013690	401720		NM_001013690	ENSG00000261308	FIGNL2	-	fidgetin like 2	protein-coding
150473	chr21	42609601	42610030	+	0	NA	intron (NR_131192, intron 1 of 1)	MLT1I|LTR|ERVL-MaLR	5280	NR_131192	101928233		NR_131192	ENSG00000225431	LINC01671	-	long intergenic non-protein coding RNA 1671	ncRNA
41828	chr11	67057621	67057880	+	0	NA	intron (NM_001300886, intron 1 of 2)	MIR|SINE|MIR	903	NM_014578	29984		NM_014578	ENSG00000173156	RHOD	ARHD|RHOHP1|RHOM|Rho	ras homolog family member D	protein-coding
56997	chr12	120572151	120573030	+	0	NA	intron (NM_001330474, intron 14 of 16)	(TTGTT)n|Simple_repeat|Simple_repeat	8808	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
158985	chr3	10276971	10277530	+	0	NA	intron (NM_014760, intron 5 of 7)	intron (NM_014760, intron 5 of 7)	-3101	NR_162141	113219470		NR_162141		MIR12127	-	microRNA 12127	ncRNA
5641	chr1	26236201	26236400	+	0	NA	intron (NM_001319944, intron 1 of 13)	MIRb|SINE|MIR	2100	NM_022778	64793		NM_022778	ENSG00000130695	CEP85	CCDC21	centrosomal protein 85	protein-coding
152854	chr22	22210421	22211050	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-34051	NM_001303509	7441		NM_007128	ENSG00000169575	VPREB1	CD179a|IGI|IGVPB|VPREB	V-set pre-B cell surrogate light chain 1	protein-coding
10529	chr1	66953551	66953850	+	0	NA	intron (NM_001077702, intron 5 of 15)	AluSz|SINE|Alu	23444	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
80574	chr16	2859771	2860680	+	0	NA	Intergenic	Intergenic	-2055	NM_022119	64063		NM_022119	ENSG00000005001	PRSS22	BSSP-4|SP001LA|hBSSP-4	serine protease 22	protein-coding
231777	chr9	132258671	132259730	+	0	NA	Intergenic	Intergenic	95656	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
79483	chr16	768521	768780	+	0	NA	exon (NM_013404, exon 17 of 17)	exon (NM_013404, exon 17 of 17)	-1533	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
101779	chr17	73171801	73172230	+	0	NA	3' UTR (NM_001050, exon 2 of 2)	3' UTR (NM_001050, exon 2 of 2)	7005	NM_001050	6752		NM_001050	ENSG00000180616	SSTR2	SST2	somatostatin receptor 2	protein-coding
188447	chr5	154474521	154475030	+	0	NA	TTS (NM_004821)	TTS (NM_004821)	3452	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
151915	chr22	19024871	19025680	+	0	NA	intron (NR_110533, intron 5 of 5)	intron (NR_110533, intron 5 of 5)	2651	NR_026651	26220		NR_002733	ENSG00000273032	DGCR5	DGCR10|DGCR9|DGS-A|DGS-B|LINC00037|NCRNA00037|POM121L5P|RIP	DiGeorge syndrome critical region gene 5	ncRNA
111995	chr19	4927171	4927330	+	0	NA	intron (NM_013282, intron 1 of 15)	AluSz6|SINE|Alu	-5437	NR_039902	100616337		NR_039902	ENSG00000263409	MIR4747	mir-4747	microRNA 4747	ncRNA
2171	chr1	8472551	8473150	+	0	NA	intron (NM_012102, intron 11 of 23)	intron (NM_012102, intron 11 of 23)	22063	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA
220172	chr8	95135451	95135650	+	0	NA	intron (NM_024613, intron 1 of 1)	AluJb|SINE|Alu	1765	NM_024613	79666		NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding
169705	chr3	172103751	172104050	+	0	NA	intron (NM_001135095, intron 1 of 25)	intron (NM_001135095, intron 1 of 25)	63369	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
235250	chrX	41559571	41560150	+	0	NA	intron (NM_001126055, intron 16 of 24)	intron (NM_001126055, intron 16 of 24)	112400	NM_022567	60506		NM_022567	ENSG00000188937	NYX	CLRP|CSNB1|CSNB1A|CSNB4|NBM1	nyctalopin	protein-coding
172410	chr4	1797801	1798000	+	0	NA	intron (NM_022965, intron 2 of 15)	intron (NM_022965, intron 2 of 15)	4588	NM_001163213	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
41121	chr11	65560651	65561550	+	0	NA	Intergenic	Intergenic	-2741	NM_001130144	4054		NM_021070	ENSG00000168056	LTBP3	DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding
170596	chr3	186931001	186933180	+	0	NA	intron (NM_173216, intron 1 of 7)	intron (NM_173216, intron 1 of 7)	1564	NM_173216	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
45129	chr11	117187551	117187930	+	0	NA	intron (NM_001040455, intron 12 of 25)	intron (NM_001040455, intron 12 of 25)	8997	NM_001040455	51092		NM_015996	ENSG00000149577	SIDT2	CGI-40	SID1 transmembrane family member 2	protein-coding
154132	chr22	31211871	31212550	+	0	NA	promoter-TSS (NM_005569)	promoter-TSS (NM_005569)	-88	NM_005569	3985		NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding
171693	chr3	197786701	197786900	+	0	NA	non-coding (NR_027840, exon 9 of 9)	non-coding (NR_027840, exon 9 of 9)	-4426	NM_001363887	84859		NM_032773	ENSG00000186001	LRCH3	-	leucine rich repeats and calponin homology domain containing 3	protein-coding
167608	chr3	129573151	129573250	+	0	NA	intron (NM_015103, intron 13 of 35)	intron (NM_015103, intron 13 of 35)	24815	NM_001308262	132243		NM_153833	ENSG00000178804	H1-8	H1.8|H1FOO|H1oo|osH1	H1.8 linker histone	protein-coding
71855	chr15	22257671	22257830	+	0	NA	promoter-TSS (NR_033735)	promoter-TSS (NR_033735)	-864	NR_033735	646396		NR_033735		REREP3	-	arginine-glutamic acid dipeptide repeats pseudogene 3	pseudo
44469	chr11	105000271	105000430	+	0	NA	exon (NM_004347, exon 6 of 10)	exon (NM_004347, exon 6 of 10)	22818	NM_001136110	838		NM_004347	ENSG00000137757	CASP5	ICE(rel)III|ICEREL-III|ICH-3	caspase 5	protein-coding
93915	chr17	21287171	21288800	+	0	NA	promoter-TSS (NM_002756)	promoter-TSS (NM_002756)	-51	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
108677	chr18	76921271	76921630	+	0	NA	intron (NM_001306089, intron 20 of 30)	intron (NM_001306089, intron 20 of 30)	95605	NM_001025090	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
125509	chr2	12718501	12719550	+	0	NA	intron (NM_021643, intron 1 of 2)	intron (NM_021643, intron 1 of 2)	2089	NR_027303	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
28628	chr10	58435951	58436330	+	0	NA	Intergenic	Intergenic	50730	NM_003201	7019		NM_003201	ENSG00000108064	TFAM	MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3	transcription factor A, mitochondrial	protein-coding
238679	chrX	154044971	154045130	+	0	NA	intron (NM_001369393, intron 1 of 3)	intron (NM_001369393, intron 1 of 3)	-25061	NR_031757	100313781		NR_031757	ENSG00000284286	MIR718	hsa-mir-718	microRNA 718	ncRNA
34174	chr10	128097921	128098580	+	0	NA	3' UTR (NM_002417, exon 15 of 15)	3' UTR (NM_002417, exon 15 of 15)	28173	NM_002417	4288		NM_002417	ENSG00000148773	MKI67	KIA|MIB-|MIB-1|PPP1R105	marker of proliferation Ki-67	protein-coding
211145	chr7	102548021	102549250	+	0	NA	intron (NM_001097615, intron 4 of 8)	intron (NM_001097615, intron 4 of 8)	-2597	NM_001166339	100310812		NM_001166339	ENSG00000173678	SPDYE2B	SPDYE2L	speedy/RINGO cell cycle regulator family member E2B	protein-coding
112279	chr19	5820471	5821480	+	0	NA	intron (NM_004558, intron 1 of 2)	L2a|LINE|L2	15908	NM_004558	4902		NM_004558	ENSG00000171119	NRTN	NTN	neurturin	protein-coding
228342	chr9	98977371	98977530	+	0	NA	intron (NM_001855, intron 2 of 41)	intron (NM_001855, intron 2 of 41)	33543	NM_001855	1306		NM_001855	ENSG00000204291	COL15A1	-	collagen type XV alpha 1 chain	protein-coding
233542	chrX	248971	249430	+	0	NA	Intergenic	Intergenic	-27156	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
46386	chr11	126301221	126301480	+	0	NA	Intergenic	AluSx|SINE|Alu	-2710	NM_014026	28960		NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding
202341	chr6	157549071	157549450	+	0	NA	intron (NM_024630, intron 2 of 8)	intron (NM_024630, intron 2 of 8)	20128	NR_037463	100500899		NR_037463	ENSG00000266617	MIR3692	-	microRNA 3692	ncRNA
73303	chr15	41880951	41881350	+	0	NA	exon (NM_016642, exon 13 of 68)	exon (NM_016642, exon 13 of 68)	-11627	NR_135681	105370792		NR_135681	ENSG00000174171	LOC105370792	-	uncharacterized LOC105370792	ncRNA
136933	chr2	190070301	190070580	+	0	NA	Intergenic	Intergenic	-7711	NM_005259	2660		NM_005259	ENSG00000138379	MSTN	GDF8|MSLHP	myostatin	protein-coding
167958	chr3	136659221	136659480	+	0	NA	intron (NM_005862, intron 1 of 33)	intron (NM_005862, intron 1 of 33)	93028	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
16785	chr1	155534471	155534630	+	0	NA	intron (NM_018489, intron 1 of 27)	L2a|LINE|L2	-27492	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
171794	chr4	483451	484150	+	0	NA	intron (NM_133474, intron 1 of 2)	intron (NM_133474, intron 1 of 2)	-9591	NR_002451	79963		NM_024903	ENSG00000293360	ABCA11P	ABCA11|EST1133530	ATP binding cassette subfamily A member 11, pseudogene	pseudo
114020	chr19	10897121	10897380	+	0	NA	intron (NM_001370089, intron 1 of 14)	MIRc|SINE|MIR	24821	NM_001370089	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
40271	chr11	63815701	63815900	+	0	NA	intron (NM_138471, intron 1 of 5)	AluSp|SINE|Alu	2344	NM_138471	144097		NM_138471	ENSG00000168005	SPINDOC	C11orf84|SPIN-DOC	spindlin interactor and repressor of chromatin binding	protein-coding
204521	chr7	4798151	4798930	+	0	NA	3' UTR (NM_018059, exon 15 of 15)	3' UTR (NM_018059, exon 15 of 15)	-9901	NR_039800	100616465		NR_039800	ENSG00000264474	MIR4656	-	microRNA 4656	ncRNA
217174	chr8	26303421	26303680	+	0	NA	intron (NM_002717, intron 2 of 9)	intron (NM_002717, intron 2 of 9)	10334	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
215967	chr8	8703001	8703330	+	0	NA	exon (NM_194284, exon 1 of 1)	exon (NM_194284, exon 1 of 1)	1228	NM_194284	137075		NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding
32051	chr10	101048951	101049350	+	0	NA	Intergenic	MIR3|SINE|MIR	-12839	NR_135067	81621		NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding
30699	chr10	80534121	80534380	+	0	NA	intron (NR_120661, intron 1 of 1)	SVA_D|Retroposon|SVA	1692	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
168393	chr3	142129021	142129280	+	0	NA	intron (NM_001178139, intron 1 of 12)	intron (NM_001178139, intron 1 of 12)	20394	NM_001375773	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
221927	chr8	129825921	129826730	+	0	NA	Intergenic	Intergenic	-39701	NM_031415	56169		NM_031415	ENSG00000147697	GSDMC	MLZE	gasdermin C	protein-coding
168142	chr3	138946301	138946600	+	0	NA	promoter-TSS (NM_001040061)	promoter-TSS (NM_001040061)	687	NM_023067	668		NM_023067	ENSG00000183770	FOXL2	BPES|BPES1|PFRK|PINTO|POF3	forkhead box L2	protein-coding
199184	chr6	111769151	111769250	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	-9283	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
13941	chr1	120328201	120328450	+	0	NA	Intergenic	Intergenic	-86702	NR_102405	728841		NM_001037501	ENSG00000270231	NBPF8	NBPF8P	NBPF member 8	protein-coding
92143	chr17	7647901	7648580	+	0	NA	intron (NM_001303263, intron 1 of 5)	AluSz6|SINE|Alu	1613	NM_001303263	482		NM_001678	ENSG00000129244	ATP1B2	AMOG	ATPase Na+/K+ transporting subunit beta 2	protein-coding
74515	chr15	60393801	60394000	+	0	NA	intron (NM_001136015, intron 1 of 13)	intron (NM_001136015, intron 1 of 13)	4086	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
81323	chr16	4717321	4717830	+	0	NA	intron (NM_133450, intron 6 of 17)	intron (NM_133450, intron 6 of 17)	16696	NM_001324130	124401		NM_133450	ENSG00000168096	ANKS3	-	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding
93727	chr17	19546801	19547000	+	0	NA	intron (NM_018242, intron 3 of 16)	MER63B|DNA|hAT-Blackjack	-10660	NR_003022	677882		NR_003022		SNORA59B	ACA59	small nucleolar RNA, H/ACA box 59B	snoRNA
217402	chr8	28355401	28355900	+	0	NA	intron (NM_018660, intron 4 of 9)	intron (NM_018660, intron 4 of 9)	17003	NM_001284244	5368		NM_006228	ENSG00000168081	PNOC	N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ	prepronociceptin	protein-coding
45097	chr11	117088501	117088700	+	0	NA	intron (NM_001281748, intron 1 of 24)	L2a|LINE|L2	9828	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
81475	chr16	8917921	8918180	+	0	NA	intron (NR_135826, intron 6 of 30)	AluY|SINE|Alu	18589	NM_001286458	7874		NM_003470	ENSG00000187555	USP7	C16DELp13.2|DEL16P13.2|HAFOUS|HAUSP|TEF1	ubiquitin specific peptidase 7	protein-coding
133088	chr2	112509221	112509480	+	0	NA	intron (NM_001371712, intron 5 of 6)	L1HS|LINE|L1	27194	NM_153712	150465		NM_153712	ENSG00000114999	TTL	-	tubulin tyrosine ligase	protein-coding
207725	chr7	47991621	47992430	+	0	NA	intron (NM_001030019, intron 8 of 9)	intron (NM_001030019, intron 8 of 9)	-12410	NR_037917	3364		NM_004507	ENSG00000136273	HUS1	hHUS1	HUS1 checkpoint clamp component	protein-coding
122486	chr19	49561651	49562100	+	0	NA	intron (NM_001270960, intron 1 of 8)	AluSz|SINE|Alu	18681	NM_001270960	51070		NM_015953	ENSG00000142546	NOSIP	CGI-25	nitric oxide synthase interacting protein	protein-coding
7940	chr1	37544751	37545050	+	0	NA	intron (NM_024700, intron 2 of 3)	L3|LINE|CR1	9393	NM_024700	79753		NM_024700	ENSG00000163877	SNIP1	NEDHCS|PML1|PMRED	Smad nuclear interacting protein 1	protein-coding
110275	chr19	1817071	1817300	+	0	NA	promoter-TSS (NR_031730)	promoter-TSS (NR_031730)	-947	NR_031730	100302210		NR_031730	ENSG00000284216	MIR1909	MIRN1909|hsa-mir-1909|mir-1909	microRNA 1909	ncRNA
97709	chr17	44331101	44331700	+	0	NA	Intergenic	Intergenic	-6530	NM_001321240	51629		NM_016016	ENSG00000013306	SLC25A39	CGI-69|CGI69	solute carrier family 25 member 39	protein-coding
106980	chr18	32022371	32022950	+	0	NA	intron (NM_017831, intron 1 of 5)	LTR49|LTR|ERV1	3835	NM_017831	54941		NM_017831	ENSG00000101695	RNF125	TNORS|TRAC-1|TRAC1	ring finger protein 125	protein-coding
228193	chr9	97695921	97698030	+	0	NA	5' UTR (NM_001354975, exon 1 of 6)	5' UTR (NM_001354975, exon 1 of 6)	365	NM_000380	7507		NM_000380	ENSG00000136936	XPA	XP1|XPAC	XPA, DNA damage recognition and repair factor	protein-coding
168099	chr3	138417421	138417850	+	0	NA	Intergenic	Intergenic	-16938	NR_136409	83850		NM_031913	ENSG00000158220	ESYT3	CHR3SYT|E-Syt3|FAM62C	extended synaptotagmin 3	protein-coding
118741	chr19	38314651	38314750	+	0	NA	intron (NM_001145463, intron 1 of 8)	AluSz6|SINE|Alu	1080	NM_001145461	90522		NM_033557	ENSG00000167645	YIF1B	FinGER8|KABAMAS	Yip1 interacting factor homolog B, membrane trafficking protein	protein-coding
185140	chr5	119312501	119312750	+	0	NA	intron (NM_001077654, intron 1 of 1)	AluJb|SINE|Alu	-20550	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
219254	chr8	67312751	67313050	+	0	NA	intron (NM_006421, intron 1 of 38)	L1MDa|LINE|L1	30881	NM_006421	10565		NM_006421	ENSG00000066777	ARFGEF1	ARFGEP1|BIG1|DEDISB|P200	ADP ribosylation factor guanine nucleotide exchange factor 1	protein-coding
175535	chr4	74531951	74532280	+	0	NA	Intergenic	Intergenic	86979	NM_001657	374		NM_001657	ENSG00000109321	AREG	AR|AREGB|CRDGF|SDGF	amphiregulin	protein-coding
229201	chr9	114718551	114719780	+	0	NA	Intergenic	MIRc|SINE|MIR	-36973	NM_001371884	100505478		NM_001199233	ENSG00000230601	TEX48	-	testis expressed 48	protein-coding
20761	chr1	200999671	201000230	+	0	NA	exon (NM_001252103, exon 12 of 34)	exon (NM_001252103, exon 12 of 34)	23764	NM_001252103	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
13778	chr1	117312421	117312680	+	0	NA	intron (NR_126408, intron 2 of 2)	L2c|LINE|L2	17084	NR_126408	104355292		NR_126408	ENSG00000235202	LINC01525	lnc-MAN1A2-1	long intergenic non-protein coding RNA 1525	ncRNA
220404	chr8	100258321	100259680	+	0	NA	exon (NM_001280539, exon 11 of 11)	exon (NM_001280539, exon 11 of 11)	43193	NM_001353837	25897		NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding
129337	chr2	68747821	68748400	+	0	NA	intron (NM_001364821, intron 1 of 10)	L2a|LINE|L2	12733	NM_001364821	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
210451	chr7	100117671	100118250	+	0	NA	intron (NM_001190415, intron 1 of 14)	AluY|SINE|Alu	1397	NM_001364999	6878		NM_005641	ENSG00000106290	TAF6	ALYUS|MGC:8964|TAF(II)70|TAF(II)80|TAF2E|TAFII-70|TAFII-80|TAFII70|TAFII80|TAFII85	TATA-box binding protein associated factor 6	protein-coding
21543	chr1	206050771	206051130	+	0	NA	Intergenic	Intergenic	-2223	NM_001007544	440712		NM_001007544	ENSG00000263961	RHEX	C1orf186	regulator of hemoglobinization and erythroid cell expansion	protein-coding
137428	chr2	196637221	196637480	+	0	NA	Intergenic	L2b|LINE|L2	-2365	NM_001353339	284992		NM_173466	ENSG00000144395	CCDC150	-	coiled-coil domain containing 150	protein-coding
96501	chr17	40312401	40312830	+	0	NA	intron (NM_000964, intron 1 of 8)	intron (NM_000964, intron 1 of 8)	3435	NM_000964	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
82716	chr16	20884121	20884380	+	0	NA	intron (NM_173475, intron 1 of 2)	intron (NM_173475, intron 1 of 2)	-15632	NM_001369631	57149		NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding
205476	chr7	17347101	17347300	+	0	NA	Intergenic	Intergenic	-27717	NR_110015	102659288		NR_110014		LINC02888	KCCAT333	long intergenic non-protein coding RNA 2888	ncRNA
128943	chr2	64586901	64587180	+	0	NA	intron (NM_203437, intron 9 of 9)	intron (NM_203437, intron 9 of 9)	-20272	NR_034023	339807		NR_034023	ENSG00000233694	LINC02579	-	long intergenic non-protein coding RNA 2579	ncRNA
47682	chr12	6360801	6361500	+	0	NA	intron (NM_001159575, intron 4 of 12)	L2a|LINE|L2	-14010	NM_001270987	4055		NM_002342	ENSG00000111321	LTBR	D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3	lymphotoxin beta receptor	protein-coding
18631	chr1	166489551	166490750	+	0	NA	promoter-TSS (NR_146890)	promoter-TSS (NR_146890)	-111	NR_146890	105371590		NR_146890		LINC01675	-	long intergenic non-protein coding RNA 1675	ncRNA
7338	chr1	32740101	32740500	+	0	NA	Intergenic	Intergenic	-1530	NM_020888	57648		NM_020888	ENSG00000162522	NHSL3	KIAA1522	NHS like 3	protein-coding
194888	chr6	34674901	34675500	+	0	NA	intron (NM_022758, intron 1 of 3)	AluSx1|SINE|Alu	-20954	NR_134625	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
902	chr1	1681151	1681250	+	0	NA	intron (NM_001110781, intron 1 of 8)	AluY|SINE|Alu	11595	NM_001290264	728661		NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding
119057	chr19	39112221	39112480	+	0	NA	TTS (NM_001363687)	TTS (NM_001363687)	-13436	NM_001014831	10298		NM_005884	ENSG00000130669	PAK4	-	p21 (RAC1) activated kinase 4	protein-coding
19498	chr1	175154801	175155630	+	0	NA	Intergenic	Intergenic	37561	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
170568	chr3	186804971	186805130	+	0	NA	intron (NM_181573, intron 1 of 10)	intron (NM_181573, intron 1 of 10)	1432	NM_002916	5984		NM_002916	ENSG00000163918	RFC4	A1|RFC37	replication factor C subunit 4	protein-coding
229080	chr9	114359771	114360300	+	0	NA	exon (NM_001317950, exon 10 of 22)	exon (NM_001317950, exon 10 of 22)	27947	NM_001317950	80709		NM_030767	ENSG00000106948	AKNA	-	AT-hook transcription factor	protein-coding
121242	chr19	46658801	46659350	+	0	NA	intron (NM_145056, intron 1 of 3)	intron (NM_145056, intron 1 of 3)	-1289	NR_040042	100506068		NR_040041	ENSG00000245598	DACT3-AS1	-	DACT3 antisense RNA 1	ncRNA
53244	chr12	62523151	62523250	+	0	NA	intron (NM_001278472, intron 9 of 35)	intron (NM_001278472, intron 9 of 35)	56374	NM_015026	23041		NM_015026	ENSG00000061987	MON2	-	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein-coding
236332	chrX	69448771	69448950	+	0	NA	Intergenic	L1PA2|LINE|L1	-55466	NM_015686	27112		NM_015686	ENSG00000130054	NALF2	CXorf63|FAM155B|TED|TMEM28|bB57D9.1	NALCN channel auxiliary factor 2	protein-coding
19105	chr1	171490201	171490750	+	0	NA	intron (NM_015172, intron 1 of 33)	intron (NM_015172, intron 1 of 33)	4945	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
132876	chr2	111135721	111135980	+	0	NA	intron (NM_138625, intron 3 of 4)	intron (NM_138625, intron 3 of 4)	14936	NM_001204107	10018		NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding
209628	chr7	77726801	77727000	+	0	NA	intron (NM_198467, intron 1 of 7)	AluSc|SINE|Alu	-29555	NR_038361	100505854		NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator	ncRNA
196169	chr6	42565201	42566700	+	0	NA	intron (NM_001363705, intron 1 of 46)	intron (NM_001363705, intron 1 of 46)	1921	NM_001184801	23304		NM_015255	ENSG00000024048	UBR2	C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
145843	chr20	45880101	45880300	+	0	NA	Intergenic	Intergenic	-1027	NM_080603	90204		NM_080603	ENSG00000168612	ZSWIM1	C20orf162	zinc finger SWIM-type containing 1	protein-coding
160372	chr3	27902501	27902880	+	0	NA	Intergenic	AluSx3|SINE|Alu	-68554	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
94321	chr17	28762221	28762480	+	0	NA	intron (NM_001288631, intron 2 of 3)	AluSx3|SINE|Alu	18339	NM_004295	9618		NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding
76736	chr15	76310271	76312300	+	0	NA	intron (NM_000126, intron 1 of 11)	CpG	184	NM_001127716	2108		NM_000126	ENSG00000140374	ETFA	EMA|GA2|MADD	electron transfer flavoprotein subunit alpha	protein-coding
109259	chr19	529101	529680	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2370	NM_004359	997		NM_004359	ENSG00000099804	CDC34	E2-CDC34|UBC3|UBCH3|UBE2R1	cell division cycle 34, ubiqiutin conjugating enzyme	protein-coding
82176	chr16	14929201	14929700	+	0	NA	intron (NR_146231, intron 21 of 38)	intron (NR_146231, intron 21 of 38)	-1370	NR_106828	102465461		NR_106828	ENSG00000278265	MIR6770-1	hsa-mir-6770-1	microRNA 6770-1	ncRNA
239257	chrY	13423601	13423900	+	0	NA	intron (NM_001258265, intron 2 of 23)	intron (NM_001258265, intron 2 of 23)	-55427	NR_162134	113219468		NR_162134		MIR12120	-	microRNA 12120	ncRNA
34222	chr10	129965251	129965350	+	0	NA	Intergenic	CpG-3521	-1026	NM_001375390	253738		NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|HADDS|O/E-2|OE-2	EBF transcription factor 3	protein-coding
5337	chr1	25254001	25254200	+	0	NA	intron (NR_135788, intron 1 of 3)	intron (NR_135788, intron 1 of 3)	-6581	NR_135143	57035		NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding
81572	chr16	9135821	9136600	+	0	NA	Intergenic	Intergenic	44566	NM_014117	29035		NM_014117	ENSG00000182831	HAPSTR1	C16orf72|PRO0149|TAPR1	HUWE1 associated protein modifying stress responses	protein-coding
74412	chr15	58987121	58988650	+	0	NA	promoter-TSS (NM_001270530)	promoter-TSS (NM_001270530)	222	NM_001270529	54778		NM_017610	ENSG00000157450	RNF111	ARK|hRNF111	ring finger protein 111	protein-coding
191414	chr6	10147001	10147200	+	0	NA	Intergenic	Intergenic	-257402	NR_145448	109729173		NR_145448	ENSG00000285278	TFAP2A-AS2	HIPSTR	TFAP2A antisense RNA 2	ncRNA
13118	chr1	111633721	111634000	+	0	NA	intron (NM_001010935, intron 2 of 8)	intron (NM_001010935, intron 2 of 8)	-13462	NR_160737	107985184		NR_160737		LOC107985184	-	uncharacterized LOC107985184	ncRNA
153366	chr22	24437701	24438350	+	0	NA	TTS (NR_028483)	TTS (NR_028483)	5906	NM_001278497	135		NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding
146725	chr20	50597371	50597980	+	0	NA	exon (NM_001290268, exon 14 of 22)	exon (NM_001290268, exon 14 of 22)	11889	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA
87180	chr16	69376821	69377080	+	0	NA	intron (NM_005652, intron 3 of 9)	AluSx|SINE|Alu	9057	NM_005652	7014		NM_005652	ENSG00000132604	TERF2	TRBF2|TRF2	telomeric repeat binding factor 2	protein-coding
26896	chr10	26441201	26441400	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	2959	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
229493	chr9	122219101	122220230	+	0	NA	intron (NM_199160, intron 4 of 8)	CpG	2075	NM_001242335	26468		NM_014368	ENSG00000106852	LHX6	LHX6.1|hLHX6	LIM homeobox 6	protein-coding
103508	chr17	78431621	78431880	+	0	NA	intron (NM_173628, intron 75 of 80)	intron (NM_173628, intron 75 of 80)	53101	NR_110601	9489		NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
226561	chr9	72367721	72368000	+	0	NA	Intergenic	AluSc|SINE|Alu	-2652	NM_001102420	7763		NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding
179819	chr5	455001	455200	+	0	NA	intron (NM_007277, intron 4 of 12)	intron (NM_007277, intron 4 of 12)	11924	NM_007277	11336		NM_007277	ENSG00000180104	EXOC3	SEC6|SEC6L1|Sec6p	exocyst complex component 3	protein-coding
97651	chr17	44202801	44203100	+	0	NA	Intergenic	Intergenic	-3066	NM_001382308	56970		NM_020218	ENSG00000087152	ATXN7L3	SGF11	ataxin 7 like 3	protein-coding
126252	chr2	27085171	27087200	+	0	NA	promoter-TSS (NM_000221)	promoter-TSS (NM_000221)	-587	NM_006488	3795		NM_000221	ENSG00000138030	KHK	FRUCTU	ketohexokinase	protein-coding
32763	chr10	104328881	104330400	+	0	NA	promoter-TSS (NM_001272012)	promoter-TSS (NM_001272012)	-648	NM_001272012	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
225314	chr9	34590721	34591000	+	0	NA	promoter-TSS (NM_001207011)	promoter-TSS (NM_001207011)	-720	NM_001207011	1271		NM_001842	ENSG00000122756	CNTFR	-	ciliary neurotrophic factor receptor	protein-coding
19604	chr1	179831651	179832580	+	0	NA	Intergenic	Intergenic	28191	NR_162130	113219451		NR_162130		MIR12116	-	microRNA 12116	ncRNA
14661	chr1	145722251	145722550	+	0	NA	intron (NR_103845, intron 1 of 3)	MIR|SINE|MIR	2901	NM_007053	11126		NM_007053	ENSG00000117281	CD160	BY55|NK1|NK28	CD160 molecule	protein-coding
165636	chr3	101784421	101784800	+	0	NA	intron (NR_145993, intron 3 of 6)	intron (NR_145993, intron 3 of 6)	4946	NM_001348998	91775		NM_145037	ENSG00000144815	NXPE3	FAM55C|MST115|MSTP115	neurexophilin and PC-esterase domain family member 3	protein-coding
13811	chr1	117612071	117612430	+	0	NA	intron (NM_017709, intron 1 of 1)	intron (NM_017709, intron 1 of 1)	6202	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
169442	chr3	165196701	165197000	+	0	NA	promoter-TSS (NM_014926)	promoter-TSS (NM_014926)	21	NM_014926	22865		NM_014926	ENSG00000121871	SLITRK3	-	SLIT and NTRK like family member 3	protein-coding
198484	chr6	106300971	106301250	+	0	NA	intron (NR_104403, intron 1 of 4)	intron (NR_104403, intron 1 of 4)	15156	NR_104402	9474		NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5	autophagy related 5	protein-coding
140259	chr2	232292471	232293050	+	0	NA	intron (NR_046477, intron 12 of 18)	intron (NR_046477, intron 12 of 18)	-85991	NM_001632	250		NM_001632	ENSG00000163283	ALPP	ALP|ALPI|IAP|PALP|PLAP|PLAP-1	alkaline phosphatase, placental	protein-coding
213288	chr7	134962351	134962450	+	0	NA	intron (NM_033140, intron 10 of 11)	intron (NM_033140, intron 10 of 11)	-24108	NM_001367817	340351		NM_178563	ENSG00000146856	AGBL3	CCP3	AGBL carboxypeptidase 3	protein-coding
212321	chr7	127347421	127348280	+	0	NA	Intergenic	CpG	44858	NM_176814	168850		NM_176814	ENSG00000048405	ZNF800	-	zinc finger protein 800	protein-coding
230075	chr9	127448501	127449920	+	0	NA	promoter-TSS (NR_002449)	promoter-TSS (NR_002449)	-573	NR_002449	26783		NR_002449	ENSG00000201302	SNORA65	RNU65|U65	small nucleolar RNA, H/ACA box 65	snoRNA
201125	chr6	142884321	142884630	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	60701	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
166035	chr3	108585771	108585930	+	0	NA	intron (NM_020890, intron 1 of 20)	intron (NM_020890, intron 1 of 20)	3588	NM_020890	57650		NM_020890	ENSG00000163507	CIP2A	KIAA1524|NOCIVA|p90	cellular inhibitor of PP2A	protein-coding
192790	chr6	26556501	26557280	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-12434	NR_134611	105374988		NR_134611	ENSG00000284607	LOC105374988	-	uncharacterized LOC105374988	ncRNA
96892	chr17	42116151	42117330	+	0	NA	intron (NM_001376227, intron 11 of 17)	AluJb|SINE|Alu	-4026	NM_024119	79132		NM_024119	ENSG00000108771	DHX58	D11LGP2|D11lgp2e|LGP2|RLR-3	DExH-box helicase 58	protein-coding
232373	chr9	135905201	135905930	+	0	NA	intron (NM_015447, intron 1 of 16)	intron (NM_015447, intron 1 of 16)	1981	NM_015447	157922		NM_015447	ENSG00000130559	CAMSAP1	CDCBM12	calmodulin regulated spectrin associated protein 1	protein-coding
219960	chr8	89730201	89730630	+	0	NA	intron (NR_125822, intron 1 of 4)	L2c|LINE|L2	27296	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
70349	chr14	101862021	101862280	+	0	NA	intron (NM_178587, intron 2 of 11)	AluJo|SINE|Alu	52287	NM_001352912	5527		NM_002719	ENSG00000078304	PPP2R5C	B56G|B56gamma|PR61G	protein phosphatase 2 regulatory subunit B'gamma	protein-coding
96923	chr17	42153121	42153630	+	0	NA	intron (NM_201434, intron 1 of 6)	AluSx1|SINE|Alu	1614	NM_201434	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
64853	chr14	35229571	35230180	+	0	NA	intron (NM_001256678, intron 4 of 6)	intron (NM_001256678, intron 4 of 6)	-48683	NM_001282234	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
139054	chr2	218712251	218712350	+	0	NA	intron (NM_014640, intron 1 of 19)	Charlie2b|DNA|hAT-Charlie	1465	NM_014640	9654		NM_014640	ENSG00000135912	TTLL4	-	tubulin tyrosine ligase like 4	protein-coding
162699	chr3	48987421	48988330	+	0	NA	Intergenic	AluY|SINE|Alu	-2033	NM_177938	54681		NM_017732	ENSG00000178467	P4HTM	EGLN4|HIDEA|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding
52049	chr12	54016201	54016680	+	0	NA	promoter-TSS (NM_014620)	promoter-TSS (NM_014620)	-448	NM_153693	3223		NM_004503	ENSG00000197757	HOXC6	CP25|HHO.C8|HOX3|HOX3C	homeobox C6	protein-coding
192461	chr6	24917601	24918100	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-6802	NM_014722	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
177929	chr4	132606451	132606550	+	0	NA	intron (NR_126401, intron 1 of 3)	intron (NR_126401, intron 1 of 3)	15411	NR_126401	104355285		NR_126401	ENSG00000251398	LINC01256	TCONS_l2_00021715	long intergenic non-protein coding RNA 1256	ncRNA
104040	chr17	80134671	80135330	+	0	NA	3' UTR (NM_014740, exon 12 of 12)	3' UTR (NM_014740, exon 12 of 12)	12128	NM_014740	9775		NM_014740	ENSG00000141543	EIF4A3	DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding
214541	chr7	150522001	150522600	+	0	NA	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	7428	NM_153236	168537		NM_153236	ENSG00000179144	GIMAP7	IAN7|hIAN7	GTPase, IMAP family member 7	protein-coding
6174	chr1	27430601	27431600	+	0	NA	intron (NM_006990, intron 1 of 8)	intron (NM_006990, intron 1 of 8)	38478	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
193158	chr6	29651421	29652480	+	0	NA	Intergenic	MIRb|SINE|MIR	-5142	NM_206814	4340		NM_002433	ENSG00000204655	MOG	BTN6|BTNL11|MOGIG2|NRCLP7	myelin oligodendrocyte glycoprotein	protein-coding
4373	chr1	20725171	20725780	+	0	NA	intron (NM_001103160, intron 4 of 8)	L2b|LINE|L2	7228	NM_001103160	400745		NM_001103160	ENSG00000189410	SH2D5	-	SH2 domain containing 5	protein-coding
40470	chr11	64231751	64232000	+	0	NA	exon (NM_001307981, exon 2 of 5)	exon (NM_001307981, exon 2 of 5)	1443	NM_001307980	3338		NM_005528	ENSG00000110011	DNAJC4	DANJC4|HSPF2|MCG18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding
232079	chr9	133536221	133536480	+	0	NA	intron (NM_014694, intron 1 of 18)	intron (NM_014694, intron 1 of 18)	1646	NM_014694	9719		NM_014694	ENSG00000197859	ADAMTSL2	ADAMTSL-2|GPHYSD1	ADAMTS like 2	protein-coding
34714	chr10	133528251	133528550	+	0	NA	intron (NM_000773, intron 1 of 8)	CpG	1037	NM_000773	1571		NM_000773	ENSG00000130649	CYP2E1	CPE1|CYP2E|P450-J|P450C2E	cytochrome P450 family 2 subfamily E member 1	protein-coding
217745	chr8	30741821	30742080	+	0	NA	Intergenic	Intergenic	-2214	NM_005671	7993		NM_005671	ENSG00000104691	UBXN8	D8S2298E|REP8|UBXD6	UBX domain protein 8	protein-coding
102077	chr17	74955821	74956100	+	0	NA	intron (NM_030630, intron 12 of 18)	intron (NM_030630, intron 12 of 18)	-14729	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
142255	chr20	3163601	3165080	+	0	NA	3' UTR (NM_001365618, exon 5 of 5)	3' UTR (NM_001365618, exon 5 of 5)	-4475	NM_001267584	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
216155	chr8	11565521	11565880	+	0	NA	Intergenic	Intergenic	-10835	NR_040035	83655		NM_054029	ENSG00000170983	LINC00208	C8orf14|NCRNA00208|VIR35	long intergenic non-protein coding RNA 208	ncRNA
61513	chr13	53437321	53437400	+	0	NA	Intergenic	L1PA2|LINE|L1	-285460	NR_125788	102723875		NR_125788		LINC01065	-	long intergenic non-protein coding RNA 1065	ncRNA
34675	chr10	133355651	133355750	+	0	NA	intron (NM_198472, intron 5 of 5)	intron (NM_198472, intron 5 of 5)	2319	NM_001301827	282969		NM_198472	ENSG00000148803	FUOM	C10orf125|FUCU|FucM	fucose mutarotase	protein-coding
159076	chr3	11846411	11847210	+	0	NA	promoter-TSS (NM_138807).2	promoter-TSS (NM_138807).2	75	NR_135611	132001		NM_138807	ENSG00000144559	TAMM41	C3orf31|COXPD56|RAM41|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding
189147	chr5	171342401	171342680	+	0	NA	Intergenic	Intergenic	-23578	NR_145720	109616973		NR_145720	ENSG00000206909	SNORA70J	-	small nucleolar RNA, H/ACA box 70J	snoRNA
36256	chr11	3778021	3778300	+	0	NA	intron (NR_157590, intron 4 of 31)	AluY|SINE|Alu	19386	NR_157591	4928		NM_005387	ENSG00000110713	NUP98	ADIR2|NUP196|NUP96|Nup98-96	nucleoporin 98 and 96 precursor	protein-coding
99908	chr17	56911451	56912200	+	0	NA	intron (NM_005082, intron 1 of 8)	AluJr4|SINE|Alu	2224	NM_005082	7706		NM_005082	ENSG00000121060	TRIM25	EFP|RNF147|Z147|ZNF147	tripartite motif containing 25	protein-coding
211774	chr7	107552471	107552700	+	0	NA	intron (NM_001379511, intron 3 of 20)	L1PA16|LINE|L1	11335	NM_001379516	10466		NM_006348	ENSG00000164597	COG5	CDG2I|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding
125284	chr2	10487601	10488380	+	0	NA	Intergenic	Intergenic	38262	NR_110597	101929715		NR_110597		ODC1-DT	lncRNA-MIF	ODC1 divergent transcript	ncRNA
37453	chr11	18115171	18115830	+	0	NA	intron (NR_026576, intron 1 of 2)	MIR|SINE|MIR	632	NR_026576	6290		NR_026576	ENSG00000290741	SAA3P	SAA3	serum amyloid A3, pseudogene	pseudo
196285	chr6	42986121	42986850	+	0	NA	intron (NM_180977, intron 1 of 13)	intron (NM_180977, intron 1 of 13)	1915	NM_001270476	5528		NM_006245	ENSG00000112640	PPP2R5D	B56D|B56delta|HJS1|MRD35	protein phosphatase 2 regulatory subunit B'delta	protein-coding
160695	chr3	32334701	32335100	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	-56953	NM_181472	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
48439	chr12	9700521	9701000	+	0	NA	Intergenic	Intergenic	31047	NR_036693	29121		NM_013269	ENSG00000069493	CLEC2D	CLAX|LLT1|OCIL	C-type lectin domain family 2 member D	protein-coding
122722	chr19	49997701	49998000	+	0	NA	intron (NM_001308420, intron 6 of 12)	MLT1J|LTR|ERVL-MaLR	27522	NM_001308420	51231		NM_016440	ENSG00000105053	VRK3	-	VRK serine/threonine kinase 3	protein-coding
108721	chr18	77086101	77086300	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	46583	NM_001025100	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
234220	chrX	12981671	12982530	+	0	NA	Intergenic	Intergenic	6990	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
9257	chr1	46223421	46223880	+	0	NA	Intergenic	Intergenic	-3345	NM_001243766	55624		NM_017739	ENSG00000085998	POMGNT1	GNTI.2|GnT I.2|LGMD2O|LGMDR15|MEB|MGAT1.2|RP76|gnT-I.2	protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)	protein-coding
2022	chr1	7632271	7632430	+	0	NA	intron (NM_001349608, intron 5 of 21)	intron (NM_001349608, intron 5 of 21)	-37380	NM_001349614	23261		NM_015215	ENSG00000171735	CAMTA1	CANPMR|CECBA	calmodulin binding transcription activator 1	protein-coding
39278	chr11	58513801	58514030	+	0	NA	Intergenic	Intergenic	-5615	NM_001005218	219968		NM_001005218	ENSG00000198283	OR5B21	-	olfactory receptor family 5 subfamily B member 21	protein-coding
177194	chr4	108191401	108191600	+	0	NA	Intergenic	L2b|LINE|L2	19380	NR_029373	641518		NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
24953	chr10	1706771	1707000	+	0	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	30640	NM_018702	105		NM_018702	ENSG00000185736	ADARB2	ADAR3|RED2	adenosine deaminase RNA specific B2 (inactive)	protein-coding
174400	chr4	39348521	39349130	+	0	NA	intron (NM_001204747, intron 2 of 24)	MLT1A-int|LTR|ERVL-MaLR	17537	NM_002913	5981		NM_002913	ENSG00000035928	RFC1	A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding
59473	chr13	26184751	26185200	+	0	NA	intron (NM_183045, intron 5 of 5)	intron (NM_183045, intron 5 of 5)	36782	NM_183044	6049		NM_005977	ENSG00000127870	RNF6	-	ring finger protein 6	protein-coding
225087	chr9	33373701	33373900	+	0	NA	Intergenic	Intergenic	28768	NR_164778	364		NM_001170	ENSG00000165269	AQP7	AQP7L|AQPap|GLYCQTL	aquaporin 7	protein-coding
235964	chrX	53482021	53482330	+	0	NA	Intergenic	LTR41|LTR|ERVL	-47799	NM_001037811	3028		NM_004493	ENSG00000072506	HSD17B10	17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1	hydroxysteroid 17-beta dehydrogenase 10	protein-coding
107179	chr18	35579251	35579550	+	0	NA	Intergenic	Tigger3c|DNA|TcMar-Tigger	-1522	NM_001384438	2589		NM_020474	ENSG00000141429	GALNT1	GALNAC-T1	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
237177	chrX	107706221	107706550	+	0	NA	Intergenic	Intergenic	10123	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
59325	chr13	24408121	24408380	+	0	NA	Intergenic	Intergenic	76800	NR_131903	100861547		NR_131903	ENSG00000261498	LINC00566	-	long intergenic non-protein coding RNA 566	ncRNA
132972	chr2	111483001	111483750	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	11786	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
53793	chr12	69070351	69070680	+	0	NA	Intergenic	Intergenic	-107275	NM_001874	1368		NM_001874	ENSG00000135678	CPM	-	carboxypeptidase M	protein-coding
57258	chr12	121581221	121582750	+	0	NA	promoter-TSS (NM_032590)	promoter-TSS (NM_032590)	-962	NM_032590	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
113318	chr19	8584271	8584450	+	0	NA	intron (NM_030957, intron 25 of 25)	MER20|DNA|hAT-Charlie	-6918	NM_012335	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
153398	chr22	24768801	24769050	+	0	NA	intron (NR_045649, intron 1 of 21)	intron (NR_045649, intron 1 of 21)	4424	NR_001283	7152		NR_001283		TOP1P2	-	DNA topoisomerase I pseudogene 2	pseudo
231621	chr9	131578001	131580100	+	0	NA	3' UTR (NM_001377937, exon 23 of 23)	3' UTR (NM_001377937, exon 23 of 23)	33527	NM_001365666	642515		NM_001365666	ENSG00000283526	PRRT1B	DSPD2|IFITMD8	proline rich transmembrane protein 1B	protein-coding
210576	chr7	100360621	100361100	+	0	NA	intron (NR_036570, intron 16 of 16)	L2b|LINE|L2	2857	NM_178238	29990		NM_013440	ENSG00000121716	PILRB	FDFACT1|FDFACT2	paired immunoglobin like type 2 receptor beta	protein-coding
124891	chr2	8423221	8423480	+	0	NA	Intergenic	MER96B|DNA|hAT-Tip100	-94931	NR_034135	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
26351	chr10	15369801	15370000	+	0	NA	intron (NM_001010924, intron 1 of 7)	intron (NM_001010924, intron 1 of 7)	1389	NM_001010924	221061		NM_001010924	ENSG00000148468	FAM171A1	APCN|C10orf38	family with sequence similarity 171 member A1	protein-coding
202274	chr6	157055671	157056000	+	0	NA	intron (NM_001363725, intron 2 of 17)	MLT1E1A|LTR|ERVL-MaLR	19408	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
125330	chr2	10806151	10806730	+	0	NA	intron (NM_001282706, intron 2 of 13)	Tigger3c|DNA|TcMar-Tigger	6345	NM_005742	10130		NM_005742	ENSG00000143870	PDIA6	ERP5|P5|TXNDC7	protein disulfide isomerase family A member 6	protein-coding
165114	chr3	71641771	71641930	+	0	NA	Intergenic	Intergenic	-57872	NM_001244810	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
219648	chr8	80367171	80368100	+	0	NA	Intergenic	MIRb|SINE|MIR	-117958	NM_001277145	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
2117	chr1	8167221	8168080	+	0	NA	Intergenic	AluSx1|SINE|Alu	-41022	NR_125998	102724539		NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA
205551	chr7	20287251	20287730	+	0	NA	Intergenic	Intergenic	-9218	NR_110117	101927769		NR_110117	ENSG00000226097	LOC101927769	-	uncharacterized LOC101927769	ncRNA
115050	chr19	14138771	14139130	+	0	NA	intron (NR_045214, intron 1 of 2)	AluJr4|SINE|Alu	1798	NR_045214	100507373		NR_045214	ENSG00000267169	ADGRL1-AS1	-	ADGRL1 antisense RNA 1	ncRNA
105262	chr17	82444271	82444430	+	0	NA	intron (NM_001193654, intron 6 of 6)	intron (NM_001193654, intron 6 of 6)	5376	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
211673	chr7	106283971	106286780	+	0	NA	promoter-TSS (NM_005746)	promoter-TSS (NM_005746)	-392	NM_005746	10135		NM_005746	ENSG00000105835	NAMPT	1110035O14Rik|PBEF|PBEF1|VF|VISFATIN	nicotinamide phosphoribosyltransferase	protein-coding
20053	chr1	185559751	185560400	+	0	NA	intron (NR_110793, intron 3 of 3)	intron (NR_110793, intron 3 of 3)	68413	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
93845	chr17	20996151	20996730	+	0	NA	Intergenic	Intergenic	46571	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
7701	chr1	36023121	36023780	+	0	NA	intron (NM_177422, intron 9 of 16)	MER57B2|LTR|ERV1	-60644	NM_014466	27285		NM_014466	ENSG00000092850	TEKT2	TEKTB1|TEKTIN-T|h-tektin-t	tektin 2	protein-coding
66996	chr14	67285721	67285980	+	0	NA	intron (NM_001256550, intron 3 of 14)	intron (NM_001256550, intron 3 of 14)	44415	NM_022474	64398		NM_022474	ENSG00000072415	PALS1	MPP5	protein associated with LIN7 1, MAGUK p55 family member	protein-coding
57778	chr12	123024821	123025700	+	0	NA	intron (NM_001384665, intron 2 of 9)	intron (NM_001384665, intron 2 of 9)	-14532	NR_036187	100422931		NR_036187	ENSG00000265526	MIR4304	-	microRNA 4304	ncRNA
42914	chr11	73388071	73388380	+	0	NA	intron (NM_032871, intron 1 of 10)	L2a|LINE|L2	11557	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
87833	chr16	75631401	75631850	+	0	NA	intron (NM_001378148, intron 8 of 13)	intron (NM_001378148, intron 8 of 13)	-8344	NM_001324448	23536		NM_012091	ENSG00000065457	ADAT1	HADAT1	adenosine deaminase tRNA specific 1	protein-coding
192338	chr6	24237871	24238580	+	0	NA	intron (NM_001195610, intron 8 of 10)	intron (NM_001195610, intron 8 of 10)	112010	NM_080723	140767		NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
207968	chr7	55255441	55256000	+	0	NA	promoter-TSS (NR_110426)	promoter-TSS (NR_110426)	-85	NR_110426	102725541		NR_110426		ELDR	Fabl|LINC01156	EGFR long non-coding downstream RNA	ncRNA
21088	chr1	203323721	203324480	+	0	NA	Intergenic	Intergenic	18581	NM_006763	7832		NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
90991	chr17	2722571	2723150	+	0	NA	3' UTR (NM_001355573, exon 4 of 4)	3' UTR (NM_001355573, exon 4 of 4)	10551	NR_136412	105371592		NR_136412		LOC105371592	-	uncharacterized LOC105371592	ncRNA
40609	chr11	64648421	64648680	+	0	NA	intron (NM_015080, intron 16 of 22)	intron (NM_015080, intron 16 of 22)	-5005	NM_138734	9379		NM_015080	ENSG00000110076	NRXN2	-	neurexin 2	protein-coding
20786	chr1	201056071	201056230	+	0	NA	intron (NM_000069, intron 28 of 43)	intron (NM_000069, intron 28 of 43)	-32436	NM_001252102	23046		NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding
143959	chr20	32827671	32828030	+	0	NA	intron (NM_012325, intron 2 of 6)	AluSx3|SINE|Alu	7896	NM_012325	22919		NM_012325	ENSG00000101367	MAPRE1	EB1	microtubule associated protein RP/EB family member 1	protein-coding
210988	chr7	102223021	102223280	+	0	NA	intron (NM_181552, intron 20 of 23)	AluJr|SINE|Alu	-61991	NM_020979	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
213693	chr7	140174701	140176300	+	0	NA	intron (NM_030647, intron 1 of 19)	intron (NM_030647, intron 1 of 19)	1483	NM_030647	80853		NM_030647	ENSG00000006459	KDM7A	JHDM1D	lysine demethylase 7A	protein-coding
120899	chr19	45594171	45595000	+	0	NA	intron (NM_005282, intron 1 of 1)	MIR|SINE|MIR	7627	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
38340	chr11	44562651	44563250	+	0	NA	Intergenic	Intergenic	-2713	NM_002231	3732		NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding
194572	chr6	33414771	33415400	+	0	NA	non-coding (NR_027692, exon 12 of 15).2	non-coding (NR_027692, exon 12 of 15).2	3022	NM_001014838	51596		NM_015921	ENSG00000112514	CUTA	ACHAP|C6orf82	cutA divalent cation tolerance homolog	protein-coding
115444	chr19	15325951	15326250	+	0	NA	intron (NM_001379291, intron 1 of 19)	L1M5|LINE|L1	6439	NM_001379292	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
159227	chr3	12907071	12907930	+	0	NA	intron (NM_014869, intron 12 of 13)	intron (NM_014869, intron 12 of 13)	-22289	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
151378	chr21	45893301	45893500	+	0	NA	intron (NM_001382276, intron 6 of 18)	intron (NM_001382276, intron 6 of 18)	45250	NM_001382278	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
62104	chr13	95025171	95025430	+	0	NA	intron (NM_001301829, intron 29 of 29)	(CA)n|Simple_repeat|Simple_repeat	65259	NR_047487	100861544		NR_047487	ENSG00000260962	LINC00557	-	long intergenic non-protein coding RNA 557	ncRNA
71380	chr14	105504001	105504280	+	0	NA	Intergenic	Intergenic	12891	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
17244	chr1	156339951	156341080	+	0	NA	intron (NR_130913, intron 2 of 2)	AluSp|SINE|Alu	1613	NM_001304820	128229		NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding
143609	chr20	31716601	31716800	+	0	NA	intron (NR_134257, intron 1 of 2)	L2c|LINE|L2	-4807	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA
158937	chr3	10143601	10143800	+	0	NA	intron (NM_001354723, intron 2 of 2)	AluSc5|SINE|Alu	1922	NM_198156	7428		NM_000551	ENSG00000134086	VHL	HRCA1|RCA1|VHL1|pVHL	von Hippel-Lindau tumor suppressor	protein-coding
124397	chr19	58400921	58402600	+	0	NA	Intergenic	CpG	1557	NR_149054	110806301		NR_149054	ENSG00000268307	LINC02560	-	long intergenic non-protein coding RNA 2560	ncRNA
102226	chr17	75237271	75237830	+	0	NA	3' UTR (NM_014001, exon 16 of 16)	3' UTR (NM_014001, exon 16 of 16)	24056	NM_014001	23163		NM_014001	ENSG00000125447	GGA3	-	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding
110524	chr19	2074601	2075350	+	0	NA	intron (NM_130807, intron 4 of 4)	AluSx3|SINE|Alu	21351	NM_130807	126308		NM_130807	ENSG00000172081	MOB3A	MOB-LAK|MOB1C|MOBKL2A|moblak	MOB kinase activator 3A	protein-coding
159343	chr3	13093321	13093580	+	0	NA	intron (NM_001376938, intron 2 of 15)	L3|LINE|CR1	-20021	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
195063	chr6	35504471	35504630	+	0	NA	intron (NM_001289395, intron 10 of 13)	MIR|SINE|MIR	-7471	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
194465	chr6	33194901	33195300	+	0	NA	intron (NM_021976, intron 8 of 9).2	intron (NM_021976, intron 8 of 9).2	-2632	NM_080679	1302		NM_080679	ENSG00000204248	COL11A2	DFNA13|DFNB53|FBCG2|HKE5|OSMEDA|OSMEDB|PARP|STL3	collagen type XI alpha 2 chain	protein-coding
57941	chr12	123666501	123666730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4498	NM_001143850	79867		NM_024809	ENSG00000168778	TCTN2	C12orf38|JBTS24|MKS8|TECT2	tectonic family member 2	protein-coding
90782	chr17	2075201	2075930	+	0	NA	intron (NM_001282326, intron 3 of 6)	intron (NM_001282326, intron 3 of 6)	13196	NM_001282326	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
86163	chr16	57762501	57762900	+	0	NA	intron (NR_134678, intron 12 of 18)	intron (NR_134678, intron 12 of 18)	9652	NR_106830	102465463		NR_106830	ENSG00000274816	MIR6772	hsa-mir-6772	microRNA 6772	ncRNA
94091	chr17	27616271	27616630	+	0	NA	intron (NM_001367810, intron 17 of 18)	HAL1ME|LINE|L1	-14738	NM_002308	3965		NM_002308	ENSG00000168961	LGALS9	HUAT|LGALS9A	galectin 9	protein-coding
213794	chr7	140907371	140907730	+	0	NA	intron (NM_001374244, intron 1 of 18)	AluY|SINE|Alu	16718	NM_001378472	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
212545	chr7	128858721	128858980	+	0	NA	3' UTR (NM_001127487, exon 47 of 47)	3' UTR (NM_001127487, exon 47 of 47)	3776	NR_149055	110806300		NR_149055	ENSG00000242902	FLNC-AS1	-	FLNC antisense RNA 1	ncRNA
60352	chr13	40798151	40798900	+	0	NA	non-coding (NR_038258, exon 8 of 8)	non-coding (NR_038258, exon 8 of 8)	8914	NM_014252	10166		NM_014252	ENSG00000102743	SLC25A15	D13S327|HHH|LNC-HC|ORC1|ORNT1	solute carrier family 25 member 15	protein-coding
8976	chr1	44634701	44635000	+	0	NA	intron (NM_001319957, intron 5 of 13)	intron (NM_001319957, intron 5 of 13)	2882	NM_001376489	55182		NM_016501	ENSG00000187147	RNF220	C1orf164|HLD23	ring finger protein 220	protein-coding
146892	chr20	51527051	51527500	+	0	NA	intron (NM_001258292, intron 1 of 9)	L2b|LINE|L2	15444	NM_001258297	4773		NM_012340	ENSG00000101096	NFATC2	JCOSL|NFAT1|NFATP	nuclear factor of activated T cells 2	protein-coding
199352	chr6	115927651	115927850	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-110981	NR_027338	728402		NR_027338		TPI1P3	-	triosephosphate isomerase 1 pseudogene 3	pseudo
183530	chr5	79878801	79879000	+	0	NA	Intergenic	Intergenic	-57679	NR_131226	105616916		NR_131226	ENSG00000250888	LINC01455	MDONA|TCONS_00009433	long intergenic non-protein coding RNA 1455	ncRNA
80735	chr16	3132921	3133180	+	0	NA	intron (NR_110900, intron 1 of 5)	AluSz|SINE|Alu	1832	NR_110900	100507458		NR_110900		ZNF213-AS1	-	ZNF213 antisense RNA 1 (head to head)	ncRNA
39758	chr11	61892951	61893350	+	0	NA	Intergenic	Intergenic	-1605	NM_021727	3995		NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
214325	chr7	149282701	149282900	+	0	NA	non-coding (NR_144366, exon 7 of 7)	non-coding (NR_144366, exon 7 of 7)	-2481	NR_036573	155060		NR_015357	ENSG00000290600	LOC155060	-	AI894139 pseudogene	pseudo
127522	chr2	42311571	42311730	+	0	NA	intron (NM_019063, intron 17 of 22)	intron (NM_019063, intron 17 of 22)	48388	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
173145	chr4	6665651	6666130	+	0	NA	Intergenic	AluY|SINE|Alu	7991	NR_134665	105374366		NR_134664	ENSG00000251580	LINC02482	-	long intergenic non-protein coding RNA 2482	ncRNA
175806	chr4	77817501	77819700	+	0	NA	intron (NM_001365006, intron 1 of 11)	CpG	464	NM_001365007	246175		NM_144571	ENSG00000138767	CNOT6L	CCR4b	CCR4-NOT transcription complex subunit 6 like	protein-coding
162970	chr3	49688821	49690430	+	0	NA	promoter-TSS (NM_022064)	promoter-TSS (NM_022064)	68	NM_022064	63891		NM_022064	ENSG00000164068	RNF123	FP1477|KPC1	ring finger protein 123	protein-coding
125766	chr2	23404571	23404730	+	0	NA	intron (NM_052920, intron 1 of 13)	intron (NM_052920, intron 1 of 13)	19471	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
98545	chr17	47675051	47675350	+	0	NA	intron (NM_002265, intron 15 of 21)	intron (NM_002265, intron 15 of 21)	-20064	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
176061	chr4	82432051	82432730	+	0	NA	intron (NM_021204, intron 1 of 5)	AluSz|SINE|Alu	1800	NM_001292017	58478		NM_021204	ENSG00000145293	ENOPH1	E1|MASA|MST145|mtnC	enolase-phosphatase 1	protein-coding
36776	chr11	9405371	9405530	+	0	NA	intron (NM_006391, intron 2 of 24)	AluY|SINE|Alu	20798	NM_006391	10527		NM_006391	ENSG00000205339	IPO7	Imp7|RANBP7	importin 7	protein-coding
111726	chr19	4345501	4345900	+	0	NA	intron (NM_032868, intron 2 of 11)	intron (NM_032868, intron 2 of 11)	2138	NM_001300862	84954		NM_032868	ENSG00000008382	MPND	-	MPN domain containing	protein-coding
229215	chr9	114896271	114896830	+	0	NA	intron (NM_001252290, intron 4 of 4)	L1MA6|LINE|L1	34041	NM_001244	944		NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	TNF superfamily member 8	protein-coding
139440	chr2	223759771	223760300	+	0	NA	intron (NM_001039569, intron 4 of 4)	intron (NM_001039569, intron 4 of 4)	77547	NM_001039569	130340		NM_178814	ENSG00000152056	AP1S3	PSORS15|sigma1C	adaptor related protein complex 1 subunit sigma 3	protein-coding
235132	chrX	40997051	40997300	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-88270	NM_001039591	8239		NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAF-X|FAM|MRX99|MRXS99F|XLID99|hFAM	ubiquitin specific peptidase 9 X-linked	protein-coding
47338	chr12	1812801	1813200	+	0	NA	intron (NM_172364, intron 26 of 37)	intron (NM_172364, intron 26 of 37)	-7267	NM_001163925	654429		NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding
197590	chr6	80106051	80107080	+	0	NA	promoter-TSS (NR_134945)	promoter-TSS (NR_134945)	-45	NM_000056	594		NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B|MSUD1B|OVD1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
153730	chr22	29303521	29304500	+	0	NA	Intergenic	AluY|SINE|Alu	-3013	NM_001278730	10634		NM_006478	ENSG00000185340	GAS2L1	GAR22	growth arrest specific 2 like 1	protein-coding
84824	chr16	31095821	31096380	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1101	NM_001311311	79001		NM_024006	ENSG00000167397	VKORC1	EDTP308|MST134|MST576|VKCFD2|VKOR	vitamin K epoxide reductase complex subunit 1	protein-coding
212827	chr7	130438251	130438350	+	0	NA	intron (NM_001257160, intron 1 of 2)	AluJb|SINE|Alu	2716	NM_001257158	95681		NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
154250	chr22	31614001	31614200	+	0	NA	intron (NM_001007467, intron 27 of 32)	intron (NM_001007467, intron 27 of 32)	7431	NR_106959	102465666		NR_106959	ENSG00000284082	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA
15846	chr1	151398751	151400400	+	0	NA	promoter-TSS (NM_002796)	promoter-TSS (NM_002796)	2	NM_002796	5692		NM_002796	ENSG00000159377	PSMB4	HN3|HsN3|PRAAS3|PROS-26|PROS26	proteasome 20S subunit beta 4	protein-coding
104454	chr17	81100371	81100780	+	0	NA	intron (NM_001385159, intron 2 of 8)	intron (NM_001385159, intron 2 of 8)	2964	NM_001385157	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
14879	chr1	146486771	146487130	+	0	NA	intron (NR_103556, intron 1 of 55)	CpG	618	NR_103556	100288805		NR_049745		HYDIN2	HYDINP1	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudo
91467	chr17	4852451	4853900	+	0	NA	intron (NM_015716, intron 1 of 30)	intron (NM_015716, intron 1 of 30)	19835	NM_001024937	50488		NM_015716	ENSG00000141503	MINK1	B55|MAP4K6|MEKKK 6|MINK|YSK2|ZC3	misshapen like kinase 1	protein-coding
59095	chr13	21137521	21138130	+	0	NA	Intergenic	AluJb|SINE|Alu	-2689	NM_005870	10284		NM_005870	ENSG00000150459	SAP18	2HOR0202|SAP18P	Sin3A associated protein 18	protein-coding
10200	chr1	61852021	61852330	+	0	NA	intron (NM_176877, intron 17 of 42)	intron (NM_176877, intron 17 of 42)	6100	NR_162146	113219465		NR_162146		MIR12132	-	microRNA 12132	ncRNA
210549	chr7	100334051	100334650	+	0	NA	intron (NR_003613, intron 1 of 6)	intron (NR_003613, intron 1 of 6)	-1715	NR_036569	101752399		NR_036569	ENSG00000272752	STAG3L5P-PVRIG2P-PILRB	FDFACT|LOC101735302-LOC101752334-PILRB|PILRB	STAG3L5P-PVRIG2P-PILRB readthrough	ncRNA
195369	chr6	36684201	36684750	+	0	NA	exon (NM_000389, exon 2 of 3)	exon (NM_000389, exon 2 of 3)	5761	NM_001374512	1026		NM_000389	ENSG00000124762	CDKN1A	CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1	cyclin dependent kinase inhibitor 1A	protein-coding
164947	chr3	71244521	71244780	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	427	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
175587	chr4	75667371	75668400	+	0	NA	intron (NM_203505, intron 1 of 11)	AluSc8|SINE|Alu	5274	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
106756	chr18	23581401	23581600	+	0	NA	intron (NM_000271, intron 1 of 24)	MIRc|SINE|MIR	5006	NM_000271	4864		NM_000271	ENSG00000141458	NPC1	NPC|POGZ|SLC65A1	NPC intracellular cholesterol transporter 1	protein-coding
167481	chr3	129154001	129154680	+	0	NA	intron (NM_001204890, intron 5 of 12)	AluSx1|SINE|Alu	6723	NM_020701	57461		NM_020701	ENSG00000240682	ISY1	FSAP33	ISY1 splicing factor homolog	protein-coding
144251	chr20	34521901	34522300	+	0	NA	intron (NR_168139, intron 2 of 4)	L2c|LINE|L2	5678	NM_001382367	83658		NM_014183	ENSG00000125971	DYNLRB1	BITH|BLP|DNCL2A|DNLC2A|ROBLD1	dynein light chain roadblock-type 1	protein-coding
70147	chr14	100286751	100287400	+	0	NA	Intergenic	Intergenic	9718	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
215429	chr7	157683021	157683480	+	0	NA	intron (NM_130842, intron 11 of 21)	intron (NM_130842, intron 11 of 21)	-108828	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
143731	chr20	32325671	32326080	+	0	NA	intron (NM_004798, intron 5 of 8)	AluSq|SINE|Alu	-32456	NM_015338	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
18511	chr1	161769801	161770000	+	0	NA	intron (NM_007348, intron 1 of 15)	MER1A|DNA|hAT-Charlie	3580	NM_007348	22926		NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A|ATP6alpha	activating transcription factor 6	protein-coding
107146	chr18	35155721	35155980	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-85184	NM_032347	84307		NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding
44963	chr11	116841501	116841830	+	0	NA	intron (NR_126362, intron 1 of 1)	intron (NR_126362, intron 1 of 1)	-3715	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
59060	chr13	20712451	20713050	+	0	NA	intron (NM_001385224, intron 1 of 1)	intron (NM_001385224, intron 1 of 1)	9051	NM_001385224	53342		NM_138284	ENSG00000172458	IL17D	IL-17D	interleukin 17D	protein-coding
125798	chr2	23954401	23954600	+	0	NA	intron (NM_181713, intron 1 of 6)	L1MB4|LINE|L1	14037	NM_181713	165324		NM_181713	ENSG00000173960	UBXN2A	UBXD4	UBX domain protein 2A	protein-coding
221469	chr8	124472471	124472700	+	0	NA	TTS (NR_108048)	TTS (NR_108048)	1769	NR_108048	101927612		NR_108047	ENSG00000245149	RNF139-DT	RNF139-AS1	RNF139 divergent transcript	ncRNA
207640	chr7	45034901	45035100	+	0	NA	intron (NM_001029835, intron 1 of 9)	AluJb|SINE|Alu	7366	NM_001029835	83605		NM_031443	ENSG00000136280	CCM2	C7orf22|OSM|PP10187	CCM2 scaffold protein	protein-coding
89420	chr16	88894471	88894830	+	0	NA	intron (NM_175931, intron 2 of 10)	intron (NM_175931, intron 2 of 10)	11135	NR_135194	101927793		NR_135194	ENSG00000259881	LOC101927793	-	uncharacterized LOC101927793	ncRNA
50507	chr12	47816471	47816630	+	0	NA	intron (NR_160436, intron 1 of 25)	intron (NR_160436, intron 1 of 25)	3353	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
207996	chr7	55497951	55498680	+	0	NA	intron (NM_001321242, intron 2 of 4)	intron (NM_001321242, intron 2 of 4)	28565	NM_001321251	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
151651	chr22	16911451	16911550	+	0	NA	Intergenic	Intergenic	84026	NR_003607	27437		NR_003607	ENSG00000290408	HSFY1P1	CECR8|HSFYL1|HSFYP1|NCRNA00016	HSFY1 pseudogene 1	pseudo
79238	chr16	385151	386200	+	0	NA	intron (NR_024453, intron 2 of 2)	AluY|SINE|Alu	3434	NR_024453	100134368		NR_024453	ENSG00000293232	LOC100134368	-	uncharacterized LOC100134368	ncRNA
78164	chr15	90444151	90444250	+	0	NA	intron (NM_003870, intron 9 of 37)	intron (NM_003870, intron 9 of 37)	55958	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
119112	chr19	39337771	39338780	+	0	NA	Intergenic	AluY|SINE|Alu	-2232	NM_004877	9535		NM_004877	ENSG00000130755	GMFG	GMF-GAMMA	glia maturation factor gamma	protein-coding
159192	chr3	12867871	12869830	+	0	NA	Intergenic	CpG	16361	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
122895	chr19	50551001	50551200	+	0	NA	promoter-TSS (NM_001348568)	promoter-TSS (NM_001348568)	-58	NM_001348568	94030		NM_001080457	ENSG00000131409	LRRC4B	HSM|LRIG4|NGL-3	leucine rich repeat containing 4B	protein-coding
23710	chr1	231674521	231674780	+	0	NA	intron (NM_001164556, intron 1 of 4)	intron (NM_001164556, intron 1 of 4)	47835	NM_001164555	27185		NM_018662	ENSG00000162946	DISC1	C1orf136|SCZD9	DISC1 scaffold protein	protein-coding
9533	chr1	51490151	51490800	+	0	NA	intron (NM_001981, intron 1 of 24)	AluSx3|SINE|Alu	28791	NM_001981	2060		NM_001981	ENSG00000085832	EPS15	AF-1P|AF1P|MLLT5	epidermal growth factor receptor pathway substrate 15	protein-coding
186340	chr5	134745201	134745400	+	0	NA	intron (NM_001745, intron 3 of 3)	AluY|SINE|Alu	6752	NM_001745	819		NM_001745	ENSG00000164615	CAMLG	CAML|CDG2Z|GET2	calcium modulating ligand	protein-coding
186875	chr5	139514671	139514830	+	0	NA	Intergenic	AluSx|SINE|Alu	-31992	NM_198282	340061		NM_198282	ENSG00000184584	STING1	ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|TMEM173|hMITA|hSTING	stimulator of interferon response cGAMP interactor 1	protein-coding
141900	chr20	853651	853950	+	0	NA	Intergenic	L2a|LINE|L2	9157	NM_031424	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
151901	chr22	18905951	18907250	+	0	NA	exon (NM_001368242, exon 2 of 5)	exon (NM_001368242, exon 2 of 5)	280	NM_005675	8214		NM_005675	ENSG00000183628	DGCR6	-	DiGeorge syndrome critical region gene 6	protein-coding
129385	chr2	68808871	68809030	+	0	NA	intron (NM_001364820, intron 4 of 9)	intron (NM_001364820, intron 4 of 9)	34040	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
159049	chr3	11582151	11582850	+	0	NA	promoter-TSS (NM_001128220)	promoter-TSS (NM_001128220)	-144	NM_001128220	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
46361	chr11	126064771	126065130	+	0	NA	Intergenic	L2c|LINE|L2	-1658	NM_016952	50937		NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|Ihog|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
169711	chr3	172128801	172129000	+	0	NA	intron (NM_022763, intron 2 of 25)	intron (NM_022763, intron 2 of 25)	88369	NM_001135095	64778		NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
79989	chr16	1818521	1818980	+	0	NA	intron (NM_001286249, intron 4 of 7)	intron (NM_001286249, intron 4 of 7)	8075	NM_005326	3029		NM_005326	ENSG00000063854	HAGH	GLO2|GLX2|GLXII|HAGH1	hydroxyacylglutathione hydrolase	protein-coding
74635	chr15	60798651	60799200	+	0	NA	intron (NM_134261, intron 1 of 10)	MIRb|SINE|MIR	117356	NR_120319	100996876		NR_120318	ENSG00000259482	RORA-AS2	-	RORA antisense RNA 2	ncRNA
35007	chr11	536801	539330	+	0	NA	intron (NM_198075, intron 1 of 13)	intron (NM_198075, intron 1 of 13)	538	NM_198075	115399		NM_198075	ENSG00000161328	LRRC56	CILD39|DNAAF12|oda8	leucine rich repeat containing 56	protein-coding
40063	chr11	62746051	62746350	+	0	NA	Intergenic	AluY|SINE|Alu	7960	NM_001370809	79842		NM_024784	ENSG00000185670	ZBTB3	-	zinc finger and BTB domain containing 3	protein-coding
174622	chr4	40302951	40303580	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3920	NR_121641	101060498		NR_121640	ENSG00000249241	LINC02265	-	long intergenic non-protein coding RNA 2265	ncRNA
163021	chr3	49800921	49801180	+	0	NA	Intergenic	AluJb|SINE|Alu	-1177	NM_001007540	389118		NM_001007540	ENSG00000187492	CDHR4	CDH29|PRO34300	cadherin related family member 4	protein-coding
620	chr1	1320801	1321180	+	0	NA	intron (NM_001256460, intron 3 of 17)	intron (NM_001256460, intron 3 of 17)	3670	NM_001256463	54973		NM_017871	ENSG00000127054	INTS11	CPSF3L|CPSF73L|INT11|NEDMLOB|PSF3L|RC-68|RC68	integrator complex subunit 11	protein-coding
141650	chr2	241740921	241741880	+	0	NA	intron (NM_001352824, intron 3 of 9)	intron (NM_001352824, intron 3 of 9)	6770	NM_152783	728294		NM_152783	ENSG00000180902	D2HGDH	D2HGD	D-2-hydroxyglutarate dehydrogenase	protein-coding
232046	chr9	133429651	133430450	+	0	NA	exon (NM_139027, exon 8 of 29).2	exon (NM_139027, exon 8 of 29).2	7683	NM_139026	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
68416	chr14	81178051	81178600	+	0	NA	3' UTR (NM_201595, exon 9 of 9)	3' UTR (NM_201595, exon 9 of 9)	24509	NR_003021	677845		NR_003021	ENSG00000221303	SNORA79	ACA65|SNORA79A	small nucleolar RNA, H/ACA box 79	snoRNA
223448	chr8	143978601	143979300	+	0	NA	intron (NR_134234, intron 9 of 10)	HAL1ME|LINE|L1	-2205	NM_000445	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
93510	chr17	19002721	19003330	+	0	NA	intron (NM_001039999, intron 2 of 5)	intron (NM_001039999, intron 2 of 5)	1739	NM_001039999	644815		NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding
3289	chr1	15314421	15314680	+	0	NA	intron (NM_052929, intron 8 of 30)	intron (NM_052929, intron 8 of 30)	29333	NR_148918	101927417		NR_148918	ENSG00000233485	FHAD1-AS1	-	FHAD1 antisense RNA 1	ncRNA
197329	chr6	73388501	73389850	+	0	NA	Intergenic	Intergenic	-5653	NM_018665	55510		NM_018665	ENSG00000080007	DDX43	CT13|HAGE	DEAD-box helicase 43	protein-coding
190741	chr6	391021	394230	+	0	NA	intron (NR_046000, intron 1 of 9)	CpG	873	NM_001195286	3662		NM_002460	ENSG00000137265	IRF4	LSIRF|MUM1|NF-EM5|SHEP8	interferon regulatory factor 4	protein-coding
92685	chr17	13025371	13025600	+	0	NA	Intergenic	MIRb|SINE|MIR	-7421	NM_001165962	60528		NM_018127	ENSG00000006744	ELAC2	COXPD17|ELC2|HPC2	elaC ribonuclease Z 2	protein-coding
157703	chr22	46373901	46375100	+	0	NA	intron (NM_001378328, intron 24 of 34)	intron (NM_001378328, intron 24 of 34)	38786	NM_018006	55687		NM_018006	ENSG00000100416	TRMU	LCAL3|MTO2|MTU1|TRMT|TRMT1	tRNA mitochondrial 2-thiouridylase	protein-coding
129559	chr2	69900951	69901530	+	0	NA	intron (NM_006857, intron 4 of 5)	L2c|LINE|L2	7284	NM_006857	11017		NM_006857	ENSG00000124380	SNRNP27	27K|RY1	small nuclear ribonucleoprotein U4/U6.U5 subunit 27	protein-coding
219667	chr8	80502671	80502830	+	0	NA	intron (NM_023929, intron 2 of 6)	MER58B|DNA|hAT-Charlie	16524	NM_001105539	65986		NM_023929	ENSG00000205189	ZBTB10	RINZF	zinc finger and BTB domain containing 10	protein-coding
123208	chr19	52732951	52733450	+	0	NA	intron (NM_001161499, intron 1 of 5)	intron (NM_001161499, intron 1 of 5)	1844	NM_001161499	81856		NM_030972	ENSG00000213020	ZNF611	-	zinc finger protein 611	protein-coding
216714	chr8	22352771	22353130	+	0	NA	intron (NM_001135721, intron 20 of 22)	intron (NM_001135721, intron 20 of 22)	-14328	NM_001351655	23516		NM_015359	ENSG00000104635	SLC39A14	HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19	solute carrier family 39 member 14	protein-coding
62092	chr13	94601171	94602280	+	0	NA	promoter-TSS (NM_180989)	promoter-TSS (NM_180989)	-132	NM_180989	160897		NM_180989	ENSG00000152749	GPR180	ITR	G protein-coupled receptor 180	protein-coding
44072	chr11	95600001	95600200	+	0	NA	Intergenic	Intergenic	189682	NM_144664	143684		NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding
16295	chr1	154168771	154169730	+	0	NA	intron (NM_001364683, intron 8 of 8)	intron (NM_001364683, intron 8 of 8)	8954	NM_001278191	7170		NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|CMYP4A|CMYP4B|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding
179420	chr4	184273451	184274030	+	0	NA	Intergenic	Intergenic	-55867	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
162858	chr3	49346101	49346300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6147	NM_001251877	7375		NM_003363	ENSG00000114316	USP4	UNP|Unph	ubiquitin specific peptidase 4	protein-coding
106552	chr18	21613721	21614500	+	0	NA	intron (NM_001291916, intron 1 of 3)	AluSx1|SINE|Alu	1796	NM_006938	6632		NM_006938	ENSG00000167088	SNRPD1	HsT2456|SMD1|SNRPD|Sm-D1	small nuclear ribonucleoprotein D1 polypeptide	protein-coding
143812	chr20	32474271	32474600	+	0	NA	intron (NM_080616, intron 2 of 7)	intron (NM_080616, intron 2 of 7)	9055	NM_080616	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
214416	chr7	149829051	149829900	+	0	NA	intron (NR_163594, intron 100 of 102)	intron (NR_163594, intron 100 of 102)	-8900	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
206261	chr7	29320171	29320330	+	0	NA	intron (NM_001293070, intron 2 of 13)	intron (NM_001293070, intron 2 of 13)	-111280	NR_120522	102724484		NR_120522		CHN2-AS1	-	CHN2 antisense RNA 1	ncRNA
217469	chr8	28787671	28788230	+	0	NA	intron (NR_026826, intron 8 of 14)	intron (NR_026826, intron 8 of 14)	86449	NR_073469	2137		NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
68175	chr14	75984621	75984880	+	0	NA	Intergenic	Intergenic	-1003	NR_045665	112752		NM_052873	ENSG00000119650	IFT43	C14orf179|CED3|RP81|SRTD18	intraflagellar transport 43	protein-coding
200489	chr6	135440101	135440630	+	0	NA	intron (NM_017651, intron 13 of 27)	L1M4|LINE|L1	57375	NM_001134831	54806		NM_017651	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding
3458	chr1	15942071	15942730	+	0	NA	exon (NM_001324137, exon 14 of 15)	exon (NM_001324137, exon 14 of 15)	33701	NM_003443	7709		NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
82632	chr16	19064571	19065150	+	0	NA	TTS (NM_001160364)	TTS (NM_001160364)	2623	NR_119382	102723385		NR_119379	ENSG00000261465	COQ7-DT	-	COQ7 divergent transcript	ncRNA
130487	chr2	85563971	85565130	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3057	NM_000821	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
198275	chr6	99607801	99609130	+	0	NA	intron (NM_021620, intron 1 of 3)	intron (NM_021620, intron 1 of 3)	1632	NM_021620	59336		NM_021620	ENSG00000112238	PRDM13	CDIDHH|MU-MB-20.220|PCH17|PFM10	PR/SET domain 13	protein-coding
141365	chr2	240656171	240656750	+	0	NA	Intergenic	MER21-int|LTR|ERVL	26425	NM_001102467	653437		NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding
239081	chrY	7874251	7874350	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	69376	NR_001551	83867		NM_031930	ENSG00000237048	TTTY12	NCRNA00135|TTY11|TTY12	testis expressed transcript, Y-linked 12	ncRNA
29166	chr10	68729271	68729880	+	0	NA	intron (NM_018237, intron 2 of 24)	FRAM|SINE|Alu	8336	NR_104262	55749		NM_018237	ENSG00000060339	CCAR1	-	cell division cycle and apoptosis regulator 1	protein-coding
184864	chr5	112329751	112330050	+	0	NA	intron (NM_022140, intron 1 of 22)	intron (NM_022140, intron 1 of 22)	89377	NR_144931	64097		NM_022140	ENSG00000129595	EPB41L4A	EPB41L4|NBL4	erythrocyte membrane protein band 4.1 like 4A	protein-coding
16260	chr1	153976771	153978600	+	0	NA	promoter-TSS (NM_006694)	promoter-TSS (NM_006694)	-11	NM_006694	10899		NM_006694	ENSG00000143543	JTB	HJTB|HSPC222|PAR|hJT	jumping translocation breakpoint	protein-coding
196102	chr6	42364851	42365550	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	86851	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
120877	chr19	45562401	45563230	+	0	NA	intron (NM_025136, intron 1 of 1)	L1MC4a|LINE|L1	21987	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
5598	chr1	26039271	26039430	+	0	NA	intron (NM_032513, intron 6 of 6)	intron (NM_032513, intron 6 of 6)	6768	NM_001004434	7780		NM_032513	ENSG00000158014	SLC30A2	PP12488|TNZD|ZNT2|ZnT-2	solute carrier family 30 member 2	protein-coding
98458	chr17	47096101	47096630	+	0	NA	Intergenic	AluJr4|SINE|Alu	92930	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
40301	chr11	63870551	63870880	+	0	NA	intron (NM_004954, intron 1 of 16)	L2b|LINE|L2	-17822	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
216613	chr8	22086071	22086230	+	0	NA	Intergenic	Intergenic	-3000	NR_148728	64760		NM_022749	ENSG00000158863	FHIP2B	FAI16|FAM160B2|RAI16|RAM160B2	FHF complex subunit HOOK interacting protein 2B	protein-coding
161823	chr3	45598751	45599080	+	0	NA	intron (NM_014240, intron 1 of 7)	MIR|SINE|MIR	4164	NM_014240	8994		NM_014240	ENSG00000144791	LIMD1	-	LIM domain containing 1	protein-coding
81256	chr16	4614501	4615500	+	0	NA	promoter-TSS (NM_145253)	promoter-TSS (NM_145253)	-112	NM_001330467	124402		NM_145253	ENSG00000153443	UBALD1	FAM100A|PP11303	UBA like domain containing 1	protein-coding
157604	chr22	46027121	46027850	+	0	NA	Intergenic	CpG	17383	NR_027036	100271722		NR_027036		LINC00899	-	long intergenic non-protein coding RNA 899	ncRNA
46003	chr11	121563051	121563580	+	0	NA	intron (NM_003105, intron 21 of 47)	intron (NM_003105, intron 21 of 47)	-81526	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
73086	chr15	40935221	40935950	+	0	NA	intron (NM_019074, intron 8 of 10)	intron (NM_019074, intron 8 of 10)	6245	NM_019074	54567		NM_019074	ENSG00000128917	DLL4	AOS6|delta4|hdelta2	delta like canonical Notch ligand 4	protein-coding
103621	chr17	78735981	78737800	+	0	NA	promoter-TSS (NM_001365040)	promoter-TSS (NM_001365040)	12	NM_001365040	9267		NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding
40972	chr11	65364671	65365380	+	0	NA	Intergenic	AluY|SINE|Alu	10274	NM_145719	220359		NM_145719	ENSG00000173825	TIGD3	-	tigger transposable element derived 3	protein-coding
189168	chr5	171400301	171400530	+	0	NA	intron (NM_001355009, intron 7 of 8)	intron (NM_001355009, intron 7 of 8)	12566	NM_001355009	4869		NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin 1	protein-coding
56567	chr12	117100651	117100950	+	0	NA	intron (NR_120464, intron 2 of 2)	intron (NR_120464, intron 2 of 2)	1333	NR_120464	101928244		NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
75680	chr15	67827071	67827530	+	0	NA	exon (NM_001365915, exon 2 of 9)	exon (NM_001365915, exon 2 of 9)	1791	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
8018	chr1	38026501	38027280	+	0	NA	Intergenic	Intergenic	14156	NM_016037	51118		NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11 small subunit processome component	protein-coding
165755	chr3	105748401	105748900	+	0	NA	intron (NM_001321811, intron 4 of 16)	intron (NM_001321811, intron 4 of 16)	118941	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
134642	chr2	144436421	144436680	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-83064	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
239200	chrY	12914521	12915500	+	0	NA	non-coding (NR_136724, exon 8 of 15)	non-coding (NR_136724, exon 8 of 15)	9305	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
99162	chr17	49387401	49388900	+	0	NA	Intergenic	Intergenic	-25677	NM_014897	22834		NM_014897	ENSG00000198740	ZNF652	-	zinc finger protein 652	protein-coding
157954	chr22	49805751	49806250	+	0	NA	intron (NM_001304808, intron 2 of 12)	AluSx1|SINE|Alu	18331	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
169832	chr3	177150251	177151680	+	0	NA	intron (NM_001374329, intron 1 of 15)	intron (NM_001374329, intron 1 of 15)	45513	NM_001374328	79718		NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	TBL1X/Y related 1	protein-coding
73273	chr15	41849471	41850530	+	0	NA	intron (NM_016642, intron 66 of 67)	intron (NM_016642, intron 66 of 67)	11187	NM_001114633	100137049		NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2 group IVB	protein-coding
63077	chr13	113175451	113175750	+	0	NA	Intergenic	Intergenic	16946	NM_001256134	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
33315	chr10	114876721	114877230	+	0	NA	intron (NM_001135051, intron 16 of 16)	intron (NM_001135051, intron 16 of 16)	55195	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
124379	chr19	58384171	58384330	+	0	NA	Intergenic	Intergenic	2608	NR_039910	100616168		NR_039910	ENSG00000266640	MIR4754	mir-4754	microRNA 4754	ncRNA
235513	chrX	47189671	47189830	+	0	NA	Intergenic	L1ME4b|LINE|L1	-1097	NM_153280	7317		NM_003334	ENSG00000130985	UBA1	A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X|VEXAS	ubiquitin like modifier activating enzyme 1	protein-coding
193483	chr6	30544621	30545350	+	0	NA	3' UTR (NM_005275, exon 12 of 12)	3' UTR (NM_005275, exon 12 of 12)	-11724	NM_001077497	80742		NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding
14167	chr1	121393021	121393280	+	0	NA	TTS (NM_001329984)	TTS (NM_001329984)	4755	NR_104189	100873165		NR_104189	ENSG00000230806	SRGAP2-AS1	-	SRGAP2 antisense RNA 1	ncRNA
70010	chr14	100076051	100077330	+	0	NA	intron (NM_016337, intron 1 of 13)	L2c|LINE|L2	11268	NM_016337	51466		NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
137976	chr2	201201521	201201980	+	0	NA	intron (NM_001230, intron 5 of 7)	intron (NM_001230, intron 5 of 7)	18609	NM_001306083	843		NM_001230	ENSG00000003400	CASP10	ALPS2|FLICE-2|FLICE2|MCH4	caspase 10	protein-coding
205928	chr7	25886601	25886800	+	0	NA	Intergenic	Intergenic	63286	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
9163	chr1	45581851	45582330	+	0	NA	Intergenic	Intergenic	-1898	NM_001195193	4678		NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding
194776	chr6	34145521	34146550	+	0	NA	promoter-TSS (NM_001282847)	promoter-TSS (NM_001282847)	52	NM_000841	2914		NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding
97157	chr17	42576051	42576500	+	0	NA	intron (NM_001256016, intron 3 of 8)	intron (NM_001256016, intron 3 of 8)	1441	NR_045671	29893		NM_013290	ENSG00000131470	PSMC3IP	GT198|HOP2|HUMGT198A|ODG3|TBPIP	PSMC3 interacting protein	protein-coding
20582	chr1	198746521	198746800	+	0	NA	intron (NM_002838, intron 26 of 32)	L2|LINE|L2	107620	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
115007	chr19	14065871	14066730	+	0	NA	Intergenic	L2a|LINE|L2	-4224	NM_001145028	342979		NM_001145028	ENSG00000187867	PALM3	-	paralemmin 3	protein-coding
196474	chr6	43573421	43573880	+	0	NA	intron (NR_144392, intron 1 of 32)	intron (NR_144392, intron 1 of 32)	2388	NM_020750	57510		NM_020750	ENSG00000124571	XPO5	exp5	exportin 5	protein-coding
105584	chr18	236521	236600	+	0	NA	intron (NM_005131, intron 11 of 20)	AluY|SINE|Alu	31487	NM_005131	9984		NM_005131	ENSG00000079134	THOC1	DFNA86|HPR1|P84|P84N5	THO complex subunit 1	protein-coding
124073	chr19	55614401	55614930	+	0	NA	exon (NM_001195605, exon 2 of 2)	exon (NM_001195605, exon 2 of 2)	9018	NM_001195605	100507290		NM_001195605	ENSG00000261221	ZNF865	-	zinc finger protein 865	protein-coding
28745	chr10	61986801	61987150	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	-62382	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
231508	chr9	131404601	131405830	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	11129	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
125475	chr2	12419871	12420030	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	220820	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA
95478	chr17	36202601	36203080	+	0	NA	Intergenic	Intergenic	-6082	NM_002983	6348		NM_002983	ENSG00000277632	CCL3	G0S19-1|LD78|LD78ALPHA|MIP-1-alpha|MIP1A|SCI|SCYA3	C-C motif chemokine ligand 3	protein-coding
174457	chr4	39717351	39718150	+	0	NA	intron (NM_001111113, intron 1 of 4)	LTR12C|LTR|ERV1	19614	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
189196	chr5	171424801	171425700	+	0	NA	intron (NM_003862, intron 2 of 4)	AluSx|SINE|Alu	5603	NM_003862	8817		NM_003862	ENSG00000156427	FGF18	FGF-18|ZFGF5	fibroblast growth factor 18	protein-coding
34503	chr10	132556421	132556880	+	0	NA	intron (NM_005539, intron 1 of 15)	L1M5|LINE|L1	18863	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
20318	chr1	197481121	197481450	+	0	NA	Intergenic	Intergenic	213033	NM_001193640	23418		NM_012076	ENSG00000134376	CRB1	CRB1-A|CRB1-B|CRB1-C|LCA8|RP12	crumbs cell polarity complex component 1	protein-coding
49028	chr12	14368721	14370150	+	0	NA	intron (NM_001286515, intron 1 of 12)	AluSx|SINE|Alu	3753	NM_001286515	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
46669	chr11	128721701	128722650	+	0	NA	intron (NM_001271010, intron 1 of 9)	MamTip2|DNA|hAT-Tip100	-26152	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
13242	chr1	112698301	112698680	+	0	NA	intron (NM_001286072, intron 17 of 21)	intron (NM_001286072, intron 17 of 21)	8566	NM_001042679	389		NM_175744	ENSG00000155366	RHOC	ARH9|ARHC|H9|RHOH9	ras homolog family member C	protein-coding
61704	chr13	74080501	74081050	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	53154	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
2225	chr1	8854351	8854650	+	0	NA	Intergenic	Intergenic	12090	NR_106786	102465436		NR_106786	ENSG00000274258	MIR6728	hsa-mir-6728	microRNA 6728	ncRNA
132788	chr2	110110151	110110250	+	0	NA	intron (NM_001371559, intron 1 of 3)	L1PB1|LINE|L1	5622	NM_001371560	7851		NM_005434	ENSG00000144063	MALL	BENE	mal, T cell differentiation protein like	protein-coding
52310	chr12	54855971	54856130	+	0	NA	intron (NM_058173, intron 2 of 3)	intron (NM_058173, intron 2 of 3)	1534	NM_058173	118430		NM_058173	ENSG00000172551	MUCL1	SBEM	mucin like 1	protein-coding
55903	chr12	109728251	109729030	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	14815	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
65155	chr14	45252701	45253950	+	0	NA	promoter-TSS (NM_018353)	promoter-TSS (NM_018353)	-123	NM_018353	55320		NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding
202618	chr6	158741071	158741230	+	0	NA	intron (NM_001318745, intron 8 of 14)	AluSx|SINE|Alu	23603	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
27220	chr10	28679051	28679500	+	0	NA	intron (NM_012342, intron 1 of 2)	intron (NM_012342, intron 1 of 2)	1754	NM_012342	25805		NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding
116730	chr19	18461701	18462380	+	0	NA	intron (NM_006532, intron 4 of 11)	intron (NM_006532, intron 4 of 11)	-23907	NM_016368	51477		NM_016368	ENSG00000105655	ISYNA1	INO1|INOS|IPS|IPS 1|IPS-1	inositol-3-phosphate synthase 1	protein-coding
135885	chr2	171143121	171143580	+	0	NA	intron (NM_001136554, intron 1 of 20)	AluSz|SINE|Alu	17543	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
119533	chr19	40575721	40577250	+	0	NA	promoter-TSS (NM_138392)	promoter-TSS (NM_138392)	-388	NM_138392	92799		NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding
58926	chr13	19757801	19758000	+	0	NA	intron (NM_001354909, intron 3 of 8)	intron (NM_001354909, intron 3 of 8)	25045	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
74910	chr15	63616171	63616530	+	0	NA	intron (NM_003922, intron 75 of 77)	intron (NM_003922, intron 75 of 77)	-15523	NR_034080	100130855		NR_034080	ENSG00000259248	USP3-AS1	-	USP3 antisense RNA 1	ncRNA
4608	chr1	22092021	22092830	+	0	NA	3' UTR (NM_001039802, exon 7 of 7)	3' UTR (NM_001039802, exon 7 of 7)	39716	NM_044472	998		NM_001791	ENSG00000070831	CDC42	CDC42Hs|G25K|TKS	cell division cycle 42	protein-coding
197023	chr6	53332501	53333030	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	4852	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
90586	chr17	1566421	1567480	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-4158	NM_006224	5306		NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding
5461	chr1	25624221	25625080	+	0	NA	intron (NM_020379, intron 1 of 11)	intron (NM_020379, intron 1 of 11)	7859	NM_001385184	57134		NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding
36572	chr11	6656771	6656930	+	0	NA	Intergenic	Intergenic	-1041	NM_003737	8642		NM_003737	ENSG00000166341	DCHS1	CDH19|CDH25|CDHR6|FIB1|MMVP2|MVP2|PCDH16|VMLDS1	dachsous cadherin-related 1	protein-coding
187503	chr5	142352471	142352730	+	0	NA	intron (NR_120664, intron 2 of 3)	AluSx1|SINE|Alu	27307	NR_120664	101926941		NR_120664	ENSG00000231185	SPRY4-AS1	THCAT68	SPRY4 antisense RNA 1	ncRNA
5386	chr1	25447601	25448000	+	0	NA	intron (NM_001282564, intron 2 of 8)	Charlie1b|DNA|hAT-Charlie	16903	NM_018202	55219		NM_018202	ENSG00000204178	MACO1	MACOILIN|TMEM57	macoilin 1	protein-coding
15427	chr1	150268021	150270030	+	0	NA	promoter-TSS (NM_001077628)	promoter-TSS (NM_001077628)	-9	NM_001077628	51107		NM_016022	ENSG00000117362	APH1A	6530402N02Rik|APH-1|APH-1A|CGI-78	aph-1 homolog A, gamma-secretase subunit	protein-coding
127726	chr2	43515821	43516280	+	0	NA	intron (NR_144316, intron 22 of 36)	L2b|LINE|L2	79924	NM_001083953	63892		NM_022065	ENSG00000115970	THADA	ARMC13|GITA|Trm732	THADA armadillo repeat containing	protein-coding
202485	chr6	158283171	158283800	+	0	NA	Intergenic	Intergenic	-28980	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
80103	chr16	2017701	2018200	+	0	NA	Intergenic	Intergenic	-1835	NM_001099456	283869		NM_001099456	ENSG00000183971	NPW	L8|L8C|PPL8|PPNPW	neuropeptide W	protein-coding
79055	chr16	123421	124480	+	0	NA	intron (NM_001243249, intron 2 of 11)	intron (NM_001243249, intron 2 of 11)	14723	NM_001077350	8131		NM_012075	ENSG00000103148	NPRL3	C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11	NPR3 like, GATOR1 complex subunit	protein-coding
222574	chr8	140628101	140628600	+	0	NA	intron (NM_012154, intron 1 of 18)	intron (NM_012154, intron 1 of 18)	7283	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
133125	chr2	112659051	112659730	+	0	NA	exon (NM_005415, exon 8 of 11)	exon (NM_005415, exon 8 of 11)	13451	NM_005415	6574		NM_005415	ENSG00000144136	SLC20A1	GLVR1|Glvr-1|PIT1|PiT-1	solute carrier family 20 member 1	protein-coding
22023	chr1	210252651	210253030	+	0	NA	Intergenic	Intergenic	15554	NM_001375428	56256		NM_019605	ENSG00000082497	SERTAD4	DJ667H12.2	SERTA domain containing 4	protein-coding
125562	chr2	15943451	15943550	+	0	NA	intron (NM_005378, intron 2 of 2)	intron (NM_005378, intron 2 of 2)	-1067	NR_161163	10408		NR_110230	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	ncRNA
1964	chr1	6588321	6589080	+	0	NA	intron (NM_005341, intron 9 of 10)	intron (NM_005341, intron 9 of 10)	8706	NM_001278647	3104		NM_005341	ENSG00000204859	ZBTB48	HKR3|TZAP|ZNF855|pp9964	zinc finger and BTB domain containing 48	protein-coding
4747	chr1	23481471	23482030	+	0	NA	intron (NM_017707, intron 1 of 24)	intron (NM_017707, intron 1 of 24)	2429	NM_001143778	55616		NM_017707	ENSG00000088280	ASAP3	ACAP4|CENTB6|DDEFL1|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding
111522	chr19	4011571	4012400	+	0	NA	intron (NM_015897, intron 1 of 10)	intron (NM_015897, intron 1 of 10)	4249	NM_015897	51588		NM_015897	ENSG00000105229	PIAS4	PIAS-gamma|PIASY|Piasg|ZMIZ6	protein inhibitor of activated STAT 4	protein-coding
215204	chr7	155805871	155806430	+	0	NA	intron (NM_000193, intron 2 of 2)	CpG	3013	NR_132319	6469		NM_000193	ENSG00000164690	SHH	HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS	sonic hedgehog signaling molecule	protein-coding
225251	chr9	34257021	34257480	+	0	NA	exon (NM_194313, exon 11 of 13)	exon (NM_194313, exon 11 of 13)	72018	NM_194313	347240		NM_194313	ENSG00000186638	KIF24	C9orf48|bA571F15.4	kinesin family member 24	protein-coding
46871	chr11	133950151	133950650	+	0	NA	intron (NM_001277285, intron 1 of 19)	intron (NM_001277285, intron 1 of 19)	6568	NM_001277285	22997		NM_014987	ENSG00000080854	IGSF9B	LINC00947|MIR4697HG	immunoglobulin superfamily member 9B	protein-coding
223467	chr8	144021371	144021530	+	0	NA	intron (NM_198572, intron 1 of 4)	intron (NM_198572, intron 1 of 4)	9170	NM_001134374	375686		NM_198572	ENSG00000186583	SPATC1	SPATA15	spermatogenesis and centriole associated 1	protein-coding
33233	chr10	114168021	114168680	+	0	NA	intron (NM_018017, intron 1 of 15)	intron (NM_018017, intron 1 of 15)	5829	NR_031747	100302224		NR_031747	ENSG00000284442	MIR2110	hsa-mir-2110|mir-2110	microRNA 2110	ncRNA
124346	chr19	58317051	58317780	+	0	NA	intron (NR_144444, intron 2 of 2)	AluSq2|SINE|Alu	-9579	NM_181846	342945		NM_181846	ENSG00000182318	ZSCAN22	HKR2|ZNF50	zinc finger and SCAN domain containing 22	protein-coding
179952	chr5	781501	781700	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	3129	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
100095	chr17	58317251	58318400	+	0	NA	intron (NM_001261835, intron 14 of 31)	MIRb|SINE|MIR	-7625	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
221745	chr8	127735901	127736800	+	0	NA	5' UTR (NM_002467, exon 1 of 3)	5' UTR (NM_002467, exon 1 of 3)	119	NM_002467	4609		NM_002467	ENSG00000136997	MYC	MRTL|MYCC|bHLHe39|c-Myc	MYC proto-oncogene, bHLH transcription factor	protein-coding
102393	chr17	75583121	75583650	+	0	NA	Intergenic	AluJo|SINE|Alu	-4673	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
70641	chr14	102915671	102916050	+	0	NA	Intergenic	Intergenic	-6803	NM_030943	81693		NM_030943	ENSG00000166126	AMN	IGS2|PRO1028|amnionless	amnion associated transmembrane protein	protein-coding
91294	chr17	4174521	4174850	+	0	NA	intron (NM_001330063, intron 19 of 24)	intron (NM_001330063, intron 19 of 24)	30988	NM_001254755	124936		NM_144611	ENSG00000167740	CYB5D2	-	cytochrome b5 domain containing 2	protein-coding
162677	chr3	48927401	48927600	+	0	NA	non-coding (NR_146083, exon 3 of 16)	non-coding (NR_146083, exon 3 of 16)	-8115	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
66581	chr14	63480371	63480530	+	0	NA	intron (NM_006246, intron 2 of 13)	AluSg|SINE|Alu	27788	NM_001282181	5529		NM_006246	ENSG00000154001	PPP2R5E	B56E|B56epsilon	protein phosphatase 2 regulatory subunit B'epsilon	protein-coding
179602	chr4	185433721	185433980	+	0	NA	intron (NM_001114357, intron 2 of 6)	AluSx1|SINE|Alu	4516	NM_001346007	441054		NM_001114357	ENSG00000205129	CFAP96	C4orf47	cilia and flagella associated protein 96	protein-coding
46178	chr11	123233301	123234300	+	0	NA	Intergenic	Intergenic	-38552	NM_024769	79827		NM_024769	ENSG00000166250	CLMP	ACAM|ASAM|CSBM|CSBS	CXADR like membrane protein	protein-coding
49156	chr12	14952071	14953230	+	0	NA	intron (NM_001175, intron 1 of 5)	intron (NM_001175, intron 1 of 5)	-1499	NM_001321422	397		NM_001175	ENSG00000111348	ARHGDIB	D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2	Rho GDP dissociation inhibitor beta	protein-coding
122526	chr19	49624771	49626000	+	0	NA	intron (NM_020719, intron 13 of 13)	intron (NM_020719, intron 13 of 13)	14758	NM_006270	6237		NM_006270	ENSG00000126458	RRAS	R-Ras|RRAS1	RAS related	protein-coding
227774	chr9	93121051	93121350	+	0	NA	TTS (NM_004148)	TTS (NM_004148)	13051	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
180180	chr5	1475251	1475550	+	0	NA	intron (NM_024830, intron 9 of 13)	intron (NM_024830, intron 9 of 13)	-29960	NM_001044	6531		NM_001044	ENSG00000142319	SLC6A3	DAT|DAT1|PKDYS|PKDYS1	solute carrier family 6 member 3	protein-coding
182703	chr5	68225651	68226280	+	0	NA	intron (NM_181523, intron 1 of 15)	intron (NM_181523, intron 1 of 15)	10209	NM_181523	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
109883	chr19	1255201	1256050	+	0	NA	exon (NM_177401, exon 7 of 8)	exon (NM_177401, exon 7 of 8)	7072	NM_177401	90007		NM_177401	ENSG00000167470	MIDN	Stx	midnolin	protein-coding
188885	chr5	159764371	159764530	+	0	NA	Intergenic	Intergenic	106934	NR_109891	101927766		NR_109891	ENSG00000253311	LINC01847	-	long intergenic non-protein coding RNA 1847	ncRNA
182954	chr5	71230151	71230450	+	0	NA	intron (NR_033968, intron 1 of 3).5	THE1B|LTR|ERVL-MaLR	-22169	NR_027028	728411		NM_207331	ENSG00000291102	GUSBP1	-	GUSB pseudogene 1	pseudo
17076	chr1	156121701	156122080	+	0	NA	intron (NM_170707, intron 1 of 11)	AluSz|SINE|Alu	-4280	NM_001282624	4000		NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding
234118	chrX	9587751	9587850	+	0	NA	intron (NM_001139468, intron 3 of 17)	L1MB8|LINE|L1	122742	NM_005647	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
94629	chr17	30000271	30000830	+	0	NA	intron (NR_026738, intron 7 of 15)	intron (NR_026738, intron 7 of 15)	58916	NM_198529	374786		NM_198529	ENSG00000176927	EFCAB5	-	EF-hand calcium binding domain 5	protein-coding
149095	chr21	15920151	15920250	+	0	NA	Intergenic	L1PA3|LINE|L1	-150288	NR_136541	388815		NR_027790	ENSG00000215386	MIR99AHG	C21orf34|C21orf35|DILA1|LINC00478|MONC	mir-99a-let-7c cluster host gene	ncRNA
237924	chrX	132031801	132032200	+	0	NA	intron (NM_001042453, intron 2 of 10)	intron (NM_001042453, intron 2 of 10)	8411	NM_001042452	51765		NM_016542	ENSG00000134602	STK26	MASK|MST4	serine/threonine kinase 26	protein-coding
116366	chr19	17879571	17880100	+	0	NA	intron (NM_000453, intron 7 of 14)	intron (NM_000453, intron 7 of 14)	7890	NM_000453	6528		NM_000453	ENSG00000105641	SLC5A5	NIS|TDH1	solute carrier family 5 member 5	protein-coding
115834	chr19	16503021	16503500	+	0	NA	exon (NM_032207, exon 3 of 9)	exon (NM_032207, exon 3 of 9)	6866	NM_032207	84167		NM_032207	ENSG00000105072	C19orf44	-	chromosome 19 open reading frame 44	protein-coding
62322	chr13	99053521	99054730	+	0	NA	intron (NM_001318849, intron 1 of 54)	intron (NM_001318849, intron 1 of 54)	32569	NM_001318849	23348		NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding
136131	chr2	173963401	173964900	+	0	NA	promoter-TSS (NM_001017371)	promoter-TSS (NM_001017371)	-270	NM_001017371	6670		NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding
120908	chr19	45601651	45602580	+	0	NA	promoter-TSS (NM_005282)	promoter-TSS (NM_005282)	97	NM_005282	2828		NM_005282	ENSG00000177464	GPR4	GPR6C.l	G protein-coupled receptor 4	protein-coding
148631	chr21	5753701	5754100	+	0	NA	Intergenic	HERV15-int|LTR|ERV1	184696	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
12080	chr1	99707571	99707880	+	0	NA	3' UTR (NM_001013660, exon 17 of 17)	3' UTR (NM_001013660, exon 17 of 17)	5228	NR_031666	100302152		NR_031666	ENSG00000221669	MIR548N	MIRN548N|hsa-mir-548n	microRNA 548n	ncRNA
210772	chr7	100698051	100698550	+	0	NA	Intergenic	AluY|SINE|Alu	-4050	NM_001375763	64599		NM_022574	ENSG00000146830	GIGYF1	GYF1|PERQ1	GRB10 interacting GYF protein 1	protein-coding
137588	chr2	197276101	197276330	+	0	NA	intron (NR_046837, intron 5 of 5)	AluSq|SINE|Alu	26304	NR_046837	101927547		NR_046837	ENSG00000236977	ANKRD44-IT1	-	ANKRD44 intronic transcript 1	ncRNA
2277	chr1	8941901	8942300	+	0	NA	Intergenic	Intergenic	-3768	NM_001270500	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
89922	chr16	89718201	89718730	+	0	NA	TTS (NR_036480)	TTS (NR_036480)	-1903	NR_110128	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
97359	chr17	43301521	43302030	+	0	NA	Intergenic	LTR13|LTR|ERVK	-1544	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
107222	chr18	36296801	36297080	+	0	NA	promoter-TSS (NM_001281740)	promoter-TSS (NM_001281740)	-773	NM_001281740	80206		NM_025135	ENSG00000134775	FHOD3	CMH28|FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding
164968	chr3	71278151	71278650	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-11358	NR_126463	104502416		NR_126463	ENSG00000244203	FOXP1-AS1	-	FOXP1 antisense RNA 1	ncRNA
158630	chr3	4974901	4975100	+	0	NA	intron (NR_125915, intron 1 of 3)	AluSx3|SINE|Alu	-4437	NM_003670	8553		NM_003670	ENSG00000134107	BHLHE40	BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14	basic helix-loop-helix family member e40	protein-coding
16486	chr1	154748971	154749200	+	0	NA	intron (NM_001204087, intron 3 of 8)	intron (NM_001204087, intron 3 of 8)	110791	NM_170782	3782		NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|ZLS3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding
144314	chr20	34870421	34870980	+	0	NA	intron (NM_178026, intron 1 of 14)	AluSx1|SINE|Alu	2156	NM_178026	2686		NM_178025	ENSG00000131067	GGT7	D20S101|GGT4|GGTL3|GGTL5	gamma-glutamyltransferase 7	protein-coding
182604	chr5	66143551	66145730	+	0	NA	promoter-TSS (NM_139168)	promoter-TSS (NM_139168)	-195	NM_139168	140890		NM_139168	ENSG00000153914	SREK1	SFRS12|SRrp508|SRrp86	splicing regulatory glutamic acid and lysine rich protein 1	protein-coding
5856	chr1	26728971	26729130	+	0	NA	intron (NM_139135, intron 1 of 19)	intron (NM_139135, intron 1 of 19)	33035	NM_006015	8289		NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding
227673	chr9	92987201	92987700	+	0	NA	intron (NM_001369951, intron 3 of 17)	AluY|SINE|Alu	12981	NM_001369952	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
89893	chr16	89684521	89684980	+	0	NA	Intergenic	AluY|SINE|Alu	-1939	NR_027703	8558		NM_003674	ENSG00000185324	CDK10	ALSAS|PISSLRE	cyclin dependent kinase 10	protein-coding
17283	chr1	156429021	156429350	+	0	NA	intron (NR_135260, intron 1 of 3)	intron (NR_135260, intron 1 of 3)	241	NR_168071	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
172938	chr4	3518571	3518730	+	0	NA	intron (NR_110005, intron 4 of 7)	intron (NR_110005, intron 4 of 7)	13499	NR_110005	4043		NM_002337	ENSG00000163956	LRPAP1	A2MRAP|A2RAP|HBP44|MRAP|MYP23|RAP|alpha-2-MRAP	LDL receptor related protein associated protein 1	protein-coding
181815	chr5	52748621	52748950	+	0	NA	Intergenic	L1MB7|LINE|L1	-39131	NM_181501	3672		NM_181501	ENSG00000213949	ITGA1	CD49a|VLA1	integrin subunit alpha 1	protein-coding
209515	chr7	76996771	76997800	+	0	NA	intron (NR_023383, intron 2 of 10)	(GT)n|Simple_repeat|Simple_repeat	16463	NR_023383	441263		NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo
53438	chr12	65170201	65171050	+	0	NA	exon (NM_001167614, exon 1 of 13)	exon (NM_001167614, exon 1 of 13)	1042	NM_014319	23592		NM_014319	ENSG00000174106	LEMD3	MAN1	LEM domain containing 3	protein-coding
67789	chr14	73757241	73757800	+	0	NA	intron (NM_001043318, intron 1 of 11)	intron (NM_001043318, intron 1 of 11)	-1227	NR_039727	100616158		NR_039727	ENSG00000264741	MIR4505	mir-4505	microRNA 4505	ncRNA
140883	chr2	237616971	237617530	+	0	NA	Intergenic	Intergenic	-10337	NM_001137550	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
120658	chr19	45085551	45086130	+	0	NA	intron (NR_134887, intron 1 of 1)	AluSz|SINE|Alu	4551	NR_134887	105372419		NR_134887	ENSG00000267348	GEMIN7-AS1	-	GEMIN7 antisense RNA 1	ncRNA
183362	chr5	77155001	77155800	+	0	NA	Intergenic	Intergenic	-24904	NM_001349752	8622		NM_003719	ENSG00000113231	PDE8B	ADSD|PPNAD3	phosphodiesterase 8B	protein-coding
14369	chr1	144105651	144106480	+	0	NA	Intergenic	(TGGCTGGCT)n|Simple_repeat|Simple_repeat	-132546	NR_144349	554282		NM_001287385	ENSG00000263513	FAM72C	-	family with sequence similarity 72 member C	protein-coding
107197	chr18	36017321	36018030	+	0	NA	intron (NM_018170, intron 6 of 6)	intron (NM_018170, intron 6 of 6)	44996	NM_031446	83608		NM_031446	ENSG00000141428	C18orf21	HsT3108|PNAS-124|PNAS-131|XTP13	chromosome 18 open reading frame 21	protein-coding
11507	chr1	90925871	90926030	+	0	NA	intron (NM_032186, intron 2 of 3)	MER72|LTR|ERV1	74191	NR_146610	105378854		NR_146610		LINC01763	-	long intergenic non-protein coding RNA 1763	ncRNA
237199	chrX	108001001	108001780	+	0	NA	Intergenic	L1PA16|LINE|L1	-19020	NM_031273	56156		NM_031273	ENSG00000170925	TEX13B	TGC3B|TSGA5	testis expressed 13B	protein-coding
161241	chr3	39228321	39228580	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-35855	NM_194293	165904		NM_194293	ENSG00000168334	XIRP1	CMYA1|Xin	xin actin binding repeat containing 1	protein-coding
43185	chr11	75405321	75405580	+	0	NA	TTS (NR_000025)	TTS (NR_000025)	1029	NR_000025	114599		NR_000025	ENSG00000207445	SNORD15B	RNU15B|U15B	small nucleolar RNA, C/D box 15B	snoRNA
98810	chr17	48307601	48308080	+	0	NA	TTS (NR_131239)	TTS (NR_131239)	13493	NR_131240	105371807		NR_131239	ENSG00000235300	SKAP1-AS2	BTR|THRA1/BTR	SKAP1 antisense RNA 2	ncRNA
215810	chr8	2501971	2502330	+	0	NA	Intergenic	Intergenic	121215	NR_125423	101927815		NR_125423	ENSG00000254319	LINC03021	-	long intergenic non-protein coding RNA 3021	ncRNA
80078	chr16	1995471	1995630	+	0	NA	Intergenic	Intergenic	5580	NM_004209	9143		NM_004209	ENSG00000127561	SYNGR3	-	synaptogyrin 3	protein-coding
84741	chr16	30947671	30951080	+	0	NA	TTS (NM_001282351)	TTS (NM_001282351)	307	NM_152288	93129		NM_152288	ENSG00000175938	ORAI3	TMEM142C	ORAI calcium release-activated calcium modulator 3	protein-coding
120371	chr19	43623871	43624330	+	0	NA	intron (NM_145296, intron 8 of 8)	intron (NM_145296, intron 8 of 8)	-4471	NM_182498	126299		NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding
25245	chr10	6047021	6047450	+	0	NA	intron (NM_000417, intron 1 of 7)	intron (NM_000417, intron 1 of 7)	15132	NM_000417	3559		NM_000417	ENSG00000134460	IL2RA	CD25|IDDM10|IL2R|IMD41|TCGFR|p55	interleukin 2 receptor subunit alpha	protein-coding
141607	chr2	241663771	241663930	+	0	NA	intron (NM_013325, intron 7 of 12)	AluSc8|SINE|Alu	22965	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
81776	chr16	11517001	11517200	+	0	NA	intron (NM_001370704, intron 4 of 66)	MER34A|LTR|ERV1	10147	NM_001370704	400499		NM_001013671	ENSG00000188897	LOC400499	-	putative uncharacterized protein LOC400499	protein-coding
202992	chr6	162798521	162798800	+	0	NA	intron (NM_001080378, intron 2 of 5)	intron (NM_001080378, intron 2 of 5)	70690	NM_001080379	135138		NM_152410	ENSG00000112530	PACRG	BUG21|GLUP|HAK005771|PACRG2.1|PARK2CRG|pf12	parkin coregulated	protein-coding
156318	chr22	40645951	40646780	+	0	NA	Intergenic	Intergenic	-9646	NM_001282661	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
144087	chr20	33730301	33730780	+	0	NA	Intergenic	AluJo|SINE|Alu	-1220	NM_001282935	84905		NM_032819	ENSG00000131061	ZNF341	HIES3	zinc finger protein 341	protein-coding
228991	chr9	113573271	113573830	+	0	NA	intron (NM_001351526, intron 2 of 8)	intron (NM_001351526, intron 2 of 8)	-7378	NM_001282922	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
116398	chr19	17965271	17965430	+	0	NA	intron (NM_002248, intron 2 of 10)	intron (NM_002248, intron 2 of 10)	14048	NM_002248	3780		NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding
105036	chr17	82057871	82058050	+	0	NA	3' UTR (NM_004127, exon 13 of 13)	3' UTR (NM_004127, exon 13 of 13)	6062	NM_212492	2873		NM_004127	ENSG00000169727	GPS1	COPS1|CSN1|SGN1	G protein pathway suppressor 1	protein-coding
76532	chr15	75128751	75129250	+	0	NA	Intergenic	AluY|SINE|Alu	-72882	NM_015492	56905		NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding
31163	chr10	90947121	90947380	+	0	NA	promoter-TSS (NR_131214)	promoter-TSS (NR_131214)	-50	NR_131214	105378427		NR_131214		XLOC_008559	-	uncharacterized LOC105378427	ncRNA
73753	chr15	45413101	45413500	+	0	NA	intron (NM_001323640, intron 3 of 4)	L2|LINE|L2	10964	NR_136648	79029		NM_024063	ENSG00000171763	AFG2B	DFNB119|NEDHLS|SPATA5L1	AFG2 AAA ATPase homolog B	protein-coding
26659	chr10	22603151	22603480	+	0	NA	intron (NM_001330062, intron 3 of 9)	intron (NM_001330062, intron 3 of 9)	110793	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
237042	chrX	103198001	103198250	+	0	NA	Intergenic	Intergenic	-16967	NM_001127688	56271		NM_001080425	ENSG00000102409	BEX4	BEXL1	brain expressed X-linked 4	protein-coding
164996	chr3	71356021	71356680	+	0	NA	intron (NM_001349340, intron 3 of 19)	intron (NM_001349340, intron 3 of 19)	-51579	NM_001244812	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
132294	chr2	105114421	105114780	+	0	NA	Intergenic	Intergenic	-11656	NR_110227	101927492		NR_110227	ENSG00000231851	MRPS9-AS1	UTAT33	MRPS9 antisense RNA 1	ncRNA
77298	chr15	82344151	82344650	+	0	NA	intron (NM_001164465, intron 6 of 8)	intron (NM_001164465, intron 6 of 8)	5075	NM_001164465	647042		NM_001164465	ENSG00000278662	GOLGA6L10	GOLGA6L18	golgin A6 family like 10	protein-coding
4226	chr1	19473971	19474630	+	0	NA	intron (NM_001206541, intron 1 of 8)	MIRb|SINE|MIR	9995	NM_001282162	832		NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line subunit beta	protein-coding
141957	chr20	1299421	1299950	+	0	NA	intron (NM_014723, intron 4 of 5)	intron (NM_014723, intron 4 of 5)	13988	NM_015685	27111		NM_015685	ENSG00000125775	SDCBP2	SITAC|SITAC18|ST-2|ST2	syndecan binding protein 2	protein-coding
968	chr1	1788251	1788550	+	0	NA	intron (NM_001282539, intron 9 of 10)	intron (NM_001282539, intron 9 of 10)	-8369	NM_001353641	65220		NM_023018	ENSG00000008130	NADK	NADK1|dJ283E3.1	NAD kinase	protein-coding
219305	chr8	70072071	70072830	+	0	NA	Intergenic	CpG-27338	-1198	NM_024504	63978		NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding
218694	chr8	58558271	58558650	+	0	NA	intron (NM_001007067, intron 1 of 8)	AluJb|SINE|Alu	5199	NM_005625	6386		NM_005625	ENSG00000137575	SDCBP	MDA-9|MDA9|SDCBP1|ST1|SYCL|TACIP18	syndecan binding protein	protein-coding
223838	chr8	145051521	145053230	+	0	NA	promoter-TSS (NM_023080)	promoter-TSS (NM_023080)	-92	NM_023080	65265		NM_023080	ENSG00000182307	C8orf33	-	chromosome 8 open reading frame 33	protein-coding
172074	chr4	1033751	1033950	+	0	NA	Intergenic	MIR3|SINE|MIR	21386	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
22393	chr1	219177501	219177700	+	0	NA	intron (NM_001300772, intron 1 of 4)	L2b|LINE|L2	2631	NM_001300772	127018		NM_138794	ENSG00000143353	LYPLAL1	Q96AV0	lysophospholipase like 1	protein-coding
139830	chr2	230420051	230420580	+	0	NA	intron (NM_001080391, intron 2 of 28)	L1M5|LINE|L1	3559	NM_001206704	6672		NM_003113	ENSG00000067066	SP100	lysp100b	SP100 nuclear antigen	protein-coding
204481	chr7	4744301	4745700	+	0	NA	intron (NM_001037165, intron 2 of 8)	intron (NM_001037165, intron 2 of 8)	-30623	NR_157345	9907		NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 subunit zeta 1	protein-coding
148709	chr21	6483601	6484150	+	0	NA	TTS (NM_001320648)	TTS (NM_001320648)	-15254	NM_001354007	102724560		NM_001321073	ENSG00000274276	LOC102724560	CBS|CBSL	cystathionine beta-synthase like	protein-coding
232097	chr9	133680921	133681350	+	0	NA	intron (NM_001134707, intron 17 of 20)	intron (NM_001134707, intron 17 of 20)	-23727	NR_102735	138948		NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA
102099	chr17	74985201	74985600	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-2232	NM_014603	30850		NM_014603	ENSG00000109089	CDR2L	HUMPPA	cerebellar degeneration related protein 2 like	protein-coding
82415	chr16	16247401	16247700	+	0	NA	intron (NM_173614, intron 6 of 30)	intron (NM_173614, intron 6 of 30)	14955	NM_173614	283820		NM_173614	ENSG00000185164	NOMO2	Nomo|PM5	NODAL modulator 2	protein-coding
152503	chr22	20937151	20937450	+	0	NA	intron (NR_156180, intron 2 of 3)	intron (NR_156180, intron 2 of 3)	-19792	NR_110537	101928891		NR_110537	ENSG00000237476	LINC01637	-	long intergenic non-protein coding RNA 1637	ncRNA
84978	chr16	31452101	31452700	+	0	NA	Intergenic	Intergenic	-5904	NM_001288767	79798		NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding
190412	chr5	179818471	179820090	+	0	NA	intron (NM_001142298, intron 2 of 8).2	intron (NM_001142298, intron 2 of 8).2	-1625	NM_003900	8878		NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding
164640	chr3	66478901	66479300	+	0	NA	intron (NM_001377345, intron 1 of 18)	intron (NM_001377345, intron 1 of 18)	20954	NM_001377346	26018		NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding
51200	chr12	50515871	50516480	+	0	NA	intron (NM_173602, intron 1 of 37)	MLT1A0|LTR|ERVL-MaLR	11190	NM_173602	57609		NM_020849	ENSG00000066084	DIP2B	-	disco interacting protein 2 homolog B	protein-coding
38019	chr11	35123371	35123630	+	0	NA	Intergenic	LTR79|LTR|ERVL	14532	NR_120528	100507144		NR_120528	ENSG00000255521	CD44-DT	-	CD44 divergent transcript	ncRNA
48087	chr12	7191971	7192130	+	0	NA	intron (NM_001351131, intron 5 of 15)	intron (NM_001351131, intron 5 of 15)	2364	NM_001351128	5830		NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
49398	chr12	22529301	22529950	+	0	NA	intron (NM_001385330, intron 2 of 23)	intron (NM_001385330, intron 2 of 23)	14572	NM_001286174	9847		NM_014802	ENSG00000111731	C2CD5	CDP138|KIAA0528	C2 calcium dependent domain containing 5	protein-coding
218793	chr8	59016871	59017030	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	102197	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
6214	chr1	27481071	27481430	+	0	NA	intron (NM_006990, intron 1 of 8)	AluSc8|SINE|Alu	8917	NM_001201404	10163		NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WASP family member 2	protein-coding
194749	chr6	33897021	33897480	+	0	NA	promoter-TSS (NR_038989)	promoter-TSS (NR_038989)	-343	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
1720	chr1	5667801	5668800	+	0	NA	Intergenic	LTR41B|LTR|ERVL	194441	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA
102142	chr17	75090821	75091080	+	0	NA	intron (NM_001369668, intron 1 of 5)	intron (NM_001369668, intron 1 of 5)	2996	NM_004695	9121		NM_004695	ENSG00000170190	SLC16A5	MCT5|MCT6	solute carrier family 16 member 5	protein-coding
128141	chr2	48351471	48352280	+	0	NA	intron (NR_164691, intron 2 of 4)	intron (NR_164691, intron 2 of 4)	37193	NM_001375452	3344		NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding
106635	chr18	22452821	22452900	+	0	NA	Intergenic	MIRb|SINE|MIR	-34945	NM_172241	64693		NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T cell lymphoma-associated antigen 1	protein-coding
57035	chr12	120713471	120714300	+	0	NA	intron (NM_001080533, intron 2 of 4)	intron (NM_001080533, intron 2 of 4)	3427	NM_001080533	84747		NM_032661	ENSG00000175970	UNC119B	POC7B	unc-119 lipid binding chaperone B	protein-coding
137949	chr2	201130561	201131400	+	0	NA	intron (NR_147243, intron 2 of 10)	intron (NR_147243, intron 2 of 10)	1651	NM_001351592	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
175969	chr4	81469951	81471100	+	0	NA	intron (NM_001300736, intron 1 of 12)	intron (NM_001300736, intron 1 of 12)	1382	NM_152545	153020		NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
189072	chr5	170273571	170274790	+	0	NA	intron (NM_005565, intron 6 of 20)	MER58A|DNA|hAT-Charlie	23597	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
207947	chr7	52283501	52283700	+	0	NA	Intergenic	Intergenic	-752033	NM_182595	285877		NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin like 12	protein-coding
154207	chr22	31492251	31492550	+	0	NA	Intergenic	Intergenic	-2558	NM_019843	56478		NM_019843	ENSG00000184708	EIF4ENIF1	4E-T|Clast4	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding
114139	chr19	11243171	11244080	+	0	NA	exon (NM_001367830, exon 11 of 49)	exon (NM_001367830, exon 11 of 49)	4006	NM_018687	55908		NM_018687	ENSG00000130173	ANGPTL8	C19orf80|PRO1185|PVPA599|RIFL|TD26	angiopoietin like 8	protein-coding
55188	chr12	101273571	101273930	+	0	NA	Intergenic	Intergenic	-6355	NM_014503	27340		NM_014503	ENSG00000120800	UTP20	1A6/DRIM|DRIM	UTP20 small subunit processome component	protein-coding
80239	chr16	2198251	2198700	+	0	NA	Intergenic	MIRb|SINE|MIR	-1870	NM_020764	57524		NM_020764	ENSG00000167971	CASKIN1	ANKS5A	CASK interacting protein 1	protein-coding
75718	chr15	68115251	68115350	+	0	NA	intron (NM_001320687, intron 3 of 14)	L1MC|LINE|L1	60724	NM_001320687	8554		NM_016166	ENSG00000033800	PIAS1	DDXBP1|GBP|GU/RH-II|ZMIZ3	protein inhibitor of activated STAT 1	protein-coding
137311	chr2	195666371	195666730	+	0	NA	intron (NM_020342, intron 1 of 9)	AluJb|SINE|Alu	9324	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
103441	chr17	78266821	78267280	+	0	NA	intron (NR_073178, intron 4 of 6)	intron (NR_073178, intron 4 of 6)	11442	NR_073178	100996291		NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA
37329	chr11	14823921	14824180	+	0	NA	intron (NM_001363569, intron 7 of 15)	L1PA13|LINE|L1	67621	NM_001377227	120227		NM_024514	ENSG00000186104	CYP2R1	-	cytochrome P450 family 2 subfamily R member 1	protein-coding
176544	chr4	98283671	98284100	+	0	NA	intron (NM_001100427, intron 1 of 14)	intron (NM_001100427, intron 1 of 14)	22501	NM_001100428	5910		NM_021159	ENSG00000138698	RAP1GDS1	GDS1|SmgGDS	Rap1 GTPase-GDP dissociation stimulator 1	protein-coding
61924	chr13	78022201	78022600	+	0	NA	intron (NR_047028, intron 2 of 5)	intron (NR_047028, intron 2 of 5)	9517	NR_047028	100874175		NR_047028		LINC00446	-	long intergenic non-protein coding RNA 446	ncRNA
186781	chr5	139347571	139347730	+	0	NA	intron (NM_001033112, intron 1 of 3)	L1PA3|LINE|L1	5216	NM_001033112	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
163186	chr3	50203651	50204000	+	0	NA	Intergenic	Intergenic	-1446	NM_006841	10991		NM_006841	ENSG00000188338	SLC38A3	DEE102|G17|NAT1|SN1|SNAT3	solute carrier family 38 member 3	protein-coding
155067	chr22	37540751	37541050	+	0	NA	Intergenic	L2c|LINE|L2	-19580	NM_152243	11135		NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding
185237	chr5	123371571	123371830	+	0	NA	intron (NR_164685, intron 17 of 20)	LTR33A|LTR|ERVL	51703	NM_001375409	153241		NM_153223	ENSG00000168944	CEP120	CCDC100|JBTS31|SRTD13	centrosomal protein 120	protein-coding
56057	chr12	110560871	110561230	+	0	NA	intron (NM_139283, intron 1 of 5)	intron (NM_139283, intron 1 of 5)	22268	NR_138550	160760		NM_139283	ENSG00000196850	PPTC7	TA-PP2C|TAPP2C	protein phosphatase targeting COQ7	protein-coding
33307	chr10	114825171	114825800	+	0	NA	intron (NM_001135051, intron 1 of 16)	intron (NM_001135051, intron 1 of 16)	3705	NM_001135051	57700		NM_020940	ENSG00000151553	FHIP2A	FAM160B1|KIAA1600|bA106M7.3	FHF complex subunit HOOK interacting protein 2A	protein-coding
32782	chr10	104393551	104393650	+	0	NA	intron (NM_001008723, intron 11 of 17)	LTR101_Mam|LTR|ERVL	39767	NM_001008723	159686		NM_001008723	ENSG00000120051	CFAP58	C10orf80|CCDC147|SPGF49|bA127L20.4|bA127L20.5|bA554P13.1	cilia and flagella associated protein 58	protein-coding
99144	chr17	49341871	49342980	+	0	NA	intron (NR_135579, intron 1 of 7)	intron (NR_135579, intron 1 of 7)	-18740	NR_110884	102724596		NR_110882		ZNF652-AS1	-	ZNF652 antisense RNA 1	ncRNA
9303	chr1	46489021	46490080	+	0	NA	promoter-TSS (NM_172225)	promoter-TSS (NM_172225)	-286	NM_172225	127343		NM_147192	ENSG00000197587	DMBX1	Atx|MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
88270	chr16	82955901	82956190	+	0	NA	intron (NR_110937, intron 1 of 2)	intron (NR_110937, intron 1 of 2)	34253	NR_110937	101928417		NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
34659	chr10	133338451	133339150	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1904	NM_001321617	50632		NM_015722	ENSG00000130643	CALY	DRD1IP|NSG3	calcyon neuron specific vesicular protein	protein-coding
165826	chr3	105834371	105834730	+	0	NA	intron (NM_001321811, intron 3 of 16)	AluY|SINE|Alu	33041	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
197882	chr6	89147901	89148130	+	0	NA	intron (NM_001010853, intron 1 of 6)	AluSx|SINE|Alu	1960	NM_001010853	135293		NM_001010853	ENSG00000146281	PM20D2	ACY1L2	peptidase M20 domain containing 2	protein-coding
55881	chr12	109634051	109634480	+	0	NA	Intergenic	(CAC)n|Simple_repeat|Simple_repeat	60471	NM_001114185	4598		NM_000431	ENSG00000110921	MVK	LRBP|MK|MVLK|POROK3	mevalonate kinase	protein-coding
80988	chr16	4000071	4000230	+	0	NA	intron (NM_001116, intron 3 of 10)	intron (NM_001116, intron 3 of 10)	-49706	NR_120311	102724927		NR_120311	ENSG00000262185	LINC02861	-	long intergenic non-protein coding RNA 2861	ncRNA
51889	chr12	53509951	53510450	+	0	NA	intron (NR_159377, intron 12 of 14)	AluSp|SINE|Alu	-2716	NM_003717	8620		NM_003717	ENSG00000139574	NPFF	FMRFAL	neuropeptide FF-amide peptide precursor	protein-coding
62251	chr13	98555051	98555150	+	0	NA	intron (NM_001286649, intron 1 of 9)	intron (NM_001286649, intron 1 of 9)	22007	NM_001032296	8428		NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
179996	chr5	926571	927130	+	0	NA	Intergenic	CpG	33966	NM_004237	9319		NM_004237	ENSG00000071539	TRIP13	16E1BP|MVA3|OOMD9|OZEMA9	thyroid hormone receptor interactor 13	protein-coding
143244	chr20	25044421	25045630	+	0	NA	intron (NM_001252675, intron 2 of 13)	intron (NM_001252675, intron 2 of 13)	-12319	NM_001252676	84532		NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short chain family member 1	protein-coding
134422	chr2	143121201	143121400	+	0	NA	Intergenic	Intergenic	-8119	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
108809	chr18	78632121	78632400	+	0	NA	Intergenic	Chap1_Mam|DNA|hAT-Charlie	-348015	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
238807	chrX	154400801	154403180	+	0	NA	3' UTR (NM_006730, exon 8 of 8)	3' UTR (NM_006730, exon 8 of 8)	1709	NR_000011	26778		NR_000011	ENSG00000207165	SNORA70	DXS648E|RNU70|U70	small nucleolar RNA, H/ACA box 70	snoRNA
11134	chr1	86706601	86707230	+	0	NA	intron (NM_001206653, intron 1 of 7)	intron (NM_001206653, intron 1 of 7)	2339	NM_001206652	51100		NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like, endophilin B1	protein-coding
211015	chr7	102365401	102365750	+	0	NA	intron (NM_001242713, intron 1 of 4)	intron (NM_001242713, intron 1 of 4)	1692	NM_001242713								
191232	chr6	5824351	5824850	+	0	NA	Intergenic	Intergenic	-129328	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
179640	chr4	186204051	186204930	+	0	NA	intron (NM_207352, intron 7 of 10)	intron (NM_207352, intron 7 of 10)	12923	NM_207352	285440		NM_207352	ENSG00000145476	CYP4V2	BCD|CYP4AH1	cytochrome P450 family 4 subfamily V member 2	protein-coding
205791	chr7	23696951	23697300	+	0	NA	intron (NM_001127365, intron 3 of 4)	intron (NM_001127365, intron 3 of 4)	-13094	NM_001260505	56164		NM_031414	ENSG00000196335	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding
132860	chr2	111017021	111017480	+	0	NA	intron (NM_001371254, intron 15 of 18)	intron (NM_001371254, intron 15 of 18)	98338	NR_122074	400997		NR_122074	ENSG00000204581	ACOXL-AS1	-	ACOXL antisense RNA 1	ncRNA
123216	chr19	52780351	52780650	+	0	NA	intron (NM_001321867, intron 1 of 3)	L2a|LINE|L2	6291	NM_198457	162966		NM_198457	ENSG00000189190	ZNF600	KR-ZNF1	zinc finger protein 600	protein-coding
49419	chr12	22687071	22687230	+	0	NA	3' UTR (NM_018638, exon 8 of 8)	3' UTR (NM_018638, exon 8 of 8)	61979	NM_018638	55500		NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding
39487	chr11	61013771	61014330	+	0	NA	intron (NM_001254751, intron 8 of 10)	intron (NM_001254751, intron 8 of 10)	42370	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
48977	chr12	13002501	13002700	+	0	NA	non-coding (NR_002774, exon 1 of 1)	non-coding (NR_002774, exon 1 of 1)	2158	NR_002774	93164		NR_002774	ENSG00000293237	HTR7P1	HTR7P	5-hydroxytryptamine receptor 7 pseudogene 1	pseudo
214408	chr7	149815201	149815900	+	0	NA	intron (NR_163594, intron 71 of 102)	intron (NR_163594, intron 71 of 102)	-22825	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
183671	chr5	80598951	80599250	+	0	NA	Intergenic	Intergenic	23424	NR_125754	103689917		NR_125754	ENSG00000251221	LINC01337	TCONS_00009713	long intergenic non-protein coding RNA 1337	ncRNA
58706	chr12	132565501	132565700	+	0	NA	intron (NM_001382740, intron 5 of 11)	intron (NM_001382740, intron 5 of 11)	-16397	NR_106821	102465975		NR_106821	ENSG00000277052	MIR6763	hsa-mir-6763	microRNA 6763	ncRNA
199347	chr6	114997871	114998630	+	0	NA	Intergenic	LTR12F|LTR|ERV1	645585	NR_134602	105377962		NR_134602	ENSG00000228777	LINC02534	-	long intergenic non-protein coding RNA 2534	ncRNA
152272	chr22	20284521	20284780	+	0	NA	Intergenic	Intergenic	-16332	NM_023004	65078		NM_023004	ENSG00000040608	RTN4R	NGR|NOGOR	reticulon 4 receptor	protein-coding
55723	chr12	108301921	108302550	+	0	NA	intron (NM_001142344, intron 1 of 2)	L1M5|LINE|L1	18427	NM_001142345	1240		NM_004072	ENSG00000174600	CMKLR1	CHEMERINR|ChemR23|DEZ|ERV1|RVER1	chemerin chemokine-like receptor 1	protein-coding
84088	chr16	29611701	29613000	+	0	NA	intron (NR_135317, intron 1 of 11)	AluY|SINE|Alu	1367	NR_135317	440354		NR_002473		SMG1P2	-	SMG1 pseudogene 2	pseudo
218085	chr8	38940251	38940780	+	0	NA	intron (NM_021623, intron 3 of 11)	intron (NM_021623, intron 3 of 11)	-33713	NM_153692	203100		NM_153692	ENSG00000169495	HTRA4	-	HtrA serine peptidase 4	protein-coding
32991	chr10	110525671	110525830	+	0	NA	Intergenic	Intergenic	27843	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
205460	chr7	17235821	17236180	+	0	NA	Intergenic	Intergenic	-62652	NM_001621	196		NM_001621	ENSG00000106546	AHR	RP85|bHLHe76	aryl hydrocarbon receptor	protein-coding
199223	chr6	111809921	111811130	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	-50608	NM_001370529	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
198933	chr6	110390601	110391130	+	0	NA	TTS (NM_004032)	TTS (NM_004032)	24710	NM_001372108	8528		NM_003649	ENSG00000203797	DDO	DASOX|DASPO|DDO-1|DDO-2	D-aspartate oxidase	protein-coding
130730	chr2	86780151	86780730	+	0	NA	Intergenic	Intergenic	10473	NM_171827	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
147413	chr20	58864401	58864780	+	0	NA	intron (NR_126334, intron 4 of 4)	intron (NR_126334, intron 4 of 4)	11609	NM_001077490	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
100783	chr17	64009451	64009550	+	0	NA	intron (NM_001099788, intron 1 of 5)	AluSx1|SINE|Alu	-2577	NM_000873	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
117763	chr19	29679821	29681930	+	0	NA	Intergenic	Intergenic	15414	NM_024310	79156		NM_024310	ENSG00000166289	PLEKHF1	APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology and FYVE domain containing 1	protein-coding
202606	chr6	158720021	158721700	+	0	NA	intron (NM_001318745, intron 7 of 14)	intron (NM_001318745, intron 7 of 14)	43893	NR_037482	100500851		NR_037482	ENSG00000265558	MIR3918	mir-3918	microRNA 3918	ncRNA
53961	chr12	72155951	72156050	+	0	NA	Intergenic	L1PA4|LINE|L1	-116370	NM_013381	29953		NM_013381	ENSG00000072657	TRHDE	PAP-II|PGPEP2|TRH-DE	thyrotropin releasing hormone degrading enzyme	protein-coding
183358	chr5	77086721	77087980	+	0	NA	promoter-TSS (NM_001329564)	promoter-TSS (NM_001329564)	-65	NM_032367	84327		NM_032367	ENSG00000132846	ZBED3	-	zinc finger BED-type containing 3	protein-coding
120662	chr19	45089401	45089850	+	0	NA	intron (NR_134887, intron 1 of 1)	AluJr|SINE|Alu	766	NR_134887	105372419		NR_134887	ENSG00000267348	GEMIN7-AS1	-	GEMIN7 antisense RNA 1	ncRNA
102100	chr17	74985901	74986330	+	0	NA	Intergenic	AluJr|SINE|Alu	-1517	NM_014603	30850		NM_014603	ENSG00000109089	CDR2L	HUMPPA	cerebellar degeneration related protein 2 like	protein-coding
45957	chr11	121420371	121420950	+	0	NA	Intergenic	Intergenic	-31654	NM_003105	6653		NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding
79565	chr16	980351	982850	+	0	NA	promoter-TSS (NR_036442)	promoter-TSS (NR_036442)	13	NR_164339	115804232		NR_036442	ENSG00000260807	CEROX1	-	cytoplasmic endogenous regulator of oxidative phosphorylation 1	ncRNA
33936	chr10	124615221	124615550	+	0	NA	Intergenic	CpG	-88643	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
164952	chr3	71252471	71253030	+	0	NA	intron (NM_001012505, intron 5 of 6)	intron (NM_001012505, intron 5 of 6)	-7673	NM_001244814	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
168012	chr3	136864201	136864900	+	0	NA	intron (NM_001291999, intron 1 of 3)	intron (NM_001291999, intron 1 of 3)	2342	NM_001291999	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
237281	chrX	111684021	111684480	+	0	NA	intron (NM_001324290, intron 2 of 3)	MER47A|DNA|TcMar-Tigger	2593	NM_001257239	79868		NM_018466	ENSG00000101901	ALG13	CDG1S|CXorf45|DEE36|EIEE36|GLT28D1|MDS031|TDRD13|YGL047W	ALG13 UDP-N-acetylglucosaminyltransferase subunit	protein-coding
116487	chr19	18112651	18113780	+	0	NA	intron (NM_015016, intron 2 of 26)	intron (NM_015016, intron 2 of 26)	-14399	NM_001290024	3594		NM_005535	ENSG00000096996	IL12RB1	CD212|IL-12R-BETA1|IL12RB|IMD30	interleukin 12 receptor subunit beta 1	protein-coding
149684	chr21	33932921	33933550	+	0	NA	intron (NR_038883, intron 1 of 2)	intron (NR_038883, intron 1 of 2)	2021	NR_134558	100506334		NM_207472	ENSG00000237945	LINC00649	LINC00650|lnc-ITSN1-2	long intergenic non-protein coding RNA 649	ncRNA
230714	chr9	128788751	128789050	+	0	NA	intron (NM_018201, intron 2 of 11)	intron (NM_018201, intron 2 of 11)	1647	NM_018201	54662		NM_018201	ENSG00000107021	TBC1D13	-	TBC1 domain family member 13	protein-coding
202956	chr6	161153871	161154030	+	0	NA	intron (NM_020133, intron 4 of 8)	intron (NM_020133, intron 4 of 8)	8032	NR_024277	79992		NM_024929		AGPAT4-IT1	C6orf59|NCRNA00241	AGPAT4 intronic transcript 1	ncRNA
226450	chr9	71702271	71702630	+	0	NA	intron (NM_001135820, intron 17 of 22)	L1ME4b|LINE|L1	66063	NM_013390	23670		NM_013390	ENSG00000135048	CEMIP2	TMEM2	cell migration inducing hyaluronidase 2	protein-coding
173334	chr4	7654321	7654580	+	0	NA	intron (NM_020777, intron 5 of 26)	intron (NM_020777, intron 5 of 26)	-99640	NR_026892	84740		NM_032654	ENSG00000272620	AFAP1-AS1	AFAP1-AS|AFAP1AS	AFAP1 antisense RNA 1	ncRNA
185010	chr5	115294851	115295150	+	0	NA	intron (NM_001375896, intron 1 of 8)	intron (NM_001375896, intron 1 of 8)	1290	NM_152549	153733		NM_152549	ENSG00000164221	CCDC112	MBC1	coiled-coil domain containing 112	protein-coding
28587	chr10	52215771	52216030	+	0	NA	intron (NM_001098512, intron 9 of 17)	intron (NM_001098512, intron 9 of 17)	98228	NR_038277	100506939		NR_038277		PRKG1-AS1	-	PRKG1 antisense RNA 1	ncRNA
7053	chr1	31958871	31959030	+	0	NA	Intergenic	AluSz6|SINE|Alu	-20582	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
127855	chr2	45645501	45646100	+	0	NA	Intergenic	Intergenic	-5875	NM_005400	5581		NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
79590	chr16	1028101	1028300	+	0	NA	Intergenic	Intergenic	-44556	NM_001172560	6755		NM_001053	ENSG00000162009	SSTR5	SS-5-R|SST5	somatostatin receptor 5	protein-coding
72484	chr15	32612801	32613000	+	0	NA	intron (NR_135833, intron 1 of 2)	L1MC5|LINE|L1	1846	NR_135833	101928042		NR_135833		ARHGAP11A-DT	-	ARHGAP11A divergent transcript	ncRNA
164602	chr3	66276521	66277150	+	0	NA	intron (NM_173471, intron 6 of 10)	intron (NM_173471, intron 6 of 10)	55832	NM_001350992	115286		NM_173471	ENSG00000144741	SLC25A26	COXPD28|SAMC	solute carrier family 25 member 26	protein-coding
173001	chr4	4289571	4291000	+	0	NA	promoter-TSS (NM_145291)	promoter-TSS (NM_145291)	34	NM_001330625	166793		NM_145291	ENSG00000168826	ZBTB49	ZNF509	zinc finger and BTB domain containing 49	protein-coding
48624	chr12	10379851	10380300	+	0	NA	intron (NR_120430, intron 3 of 3)	AluY|SINE|Alu	9966	NM_007360	22914		NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding
161082	chr3	38120971	38121530	+	0	NA	intron (NM_001321153, intron 34 of 36)	intron (NM_001321153, intron 34 of 36)	15877	NM_001607	30		NM_001607	ENSG00000060971	ACAA1	ACAA|Lnc-Myd88|PTHIO|THIO	acetyl-CoA acyltransferase 1	protein-coding
61368	chr13	51416251	51416350	+	0	NA	intron (NM_001039937, intron 5 of 18)	intron (NM_001039937, intron 5 of 18)	36736	NM_001039938	26512		NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding
146580	chr20	50100051	50100350	+	0	NA	intron (NM_001282579, intron 1 of 4)	AluJb|SINE|Alu	12950	NM_001257395	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
124153	chr19	56076451	56076780	+	0	NA	non-coding (NR_110741, exon 2 of 4)	non-coding (NR_110741, exon 2 of 4)	9931	NR_110741	101928886		NR_110741	ENSG00000267522	LINC01864	-	long intergenic non-protein coding RNA 1864	ncRNA
38646	chr11	46368771	46368930	+	0	NA	intron (NM_001199266, intron 4 of 30)	intron (NM_001199266, intron 4 of 30)	7244	NM_001105540	8525		NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding
85250	chr16	48386721	48387150	+	0	NA	Intergenic	Intergenic	-1522	NM_003031	6477		NM_003031	ENSG00000196470	SIAH1	BURHAS|SIAH1A	siah E3 ubiquitin protein ligase 1	protein-coding
149783	chr21	34893801	34894000	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	-5201	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
237000	chrX	101759001	101759280	+	0	NA	Intergenic	Intergenic	98437	NR_159739	55998		NM_032946	ENSG00000290798	NXF5	-	nuclear RNA export factor 5	pseudo
157138	chr22	42824251	42824550	+	0	NA	intron (NM_001142293, intron 6 of 14)	AluJr|SINE|Alu	32873	NM_001142293	26286		NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding
61677	chr13	73998671	73999430	+	0	NA	intron (NM_007249, intron 1 of 7)	intron (NM_007249, intron 1 of 7)	134879	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
223386	chr8	143912701	143913530	+	0	NA	Intergenic	Intergenic	26482	NM_201384	5339		NM_000445	ENSG00000178209	PLEC	EBS1|EBS5A|EBS5B|EBS5C|EBS5D|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding
238586	chrX	153887251	153887350	+	0	NA	intron (NR_130768, intron 6 of 6)	intron (NR_130768, intron 6 of 6)	-1127	NM_001278116	3897		NM_000425	ENSG00000198910	L1CAM	CAML1|CD171|HSAS|HSAS1|HYCX|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1	L1 cell adhesion molecule	protein-coding
117664	chr19	24035251	24035580	+	0	NA	intron (NM_001278677, intron 1 of 5)	AluSx|SINE|Alu	1966	NM_001278663	9534		NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding
96514	chr17	40331551	40331850	+	0	NA	intron (NM_001145302, intron 2 of 6)	intron (NM_001145302, intron 2 of 6)	-10466	NM_001024809	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
219872	chr8	85219771	85221250	+	0	NA	promoter-TSS (NM_001099673)	promoter-TSS (NM_001099673)	-88	NM_001293320	401466		NM_001099670	ENSG00000176731	RBIS	C8orf59	ribosomal biogenesis factor	protein-coding
100684	chr17	63817551	63818050	+	0	NA	exon (NM_007372, exon 19 of 19)	exon (NM_007372, exon 19 of 19)	-9631	NM_002805	5705		NM_002805	ENSG00000087191	PSMC5	RPT6|S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG	proteasome 26S subunit, ATPase 5	protein-coding
71686	chr15	20103671	20103900	+	0	NA	Intergenic	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	-178959	NR_038836	646096		NR_038836	ENSG00000290857	CHEK2P2	-	CHEK2 pseudogene 2	pseudo
13264	chr1	112719771	112719930	+	0	NA	intron (NR_169586, intron 1 of 5)	intron (NR_169586, intron 1 of 5)	945	NR_169586	284467		NM_182759	ENSG00000184599	TAFA3	FAM19A3|TAFA-3	TAFA chemokine like family member 3	protein-coding
12970	chr1	110891771	110892000	+	0	NA	intron (NM_001040033, intron 3 of 8)	intron (NM_001040033, intron 3 of 8)	18737	NM_000560	963		NM_000560	ENSG00000143119	CD53	MOX44|TSPAN25	CD53 molecule	protein-coding
208167	chr7	64667771	64668350	+	0	NA	intron (NM_001282359, intron 1 of 3)	intron (NM_001282359, intron 1 of 3)	1927	NM_001013746	51427		NM_016220	ENSG00000196247	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
146669	chr20	50506471	50506830	+	0	NA	Intergenic	Intergenic	-3671	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
138169	chr2	202637121	202638280	+	0	NA	intron (NM_173511, intron 1 of 7)	MIRb|SINE|MIR	2731	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
231516	chr9	131418101	131418650	+	0	NA	intron (NM_013318, intron 1 of 31)	intron (NM_013318, intron 1 of 31)	24289	NM_013318	84726		NM_013318	ENSG00000288701	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding
173280	chr4	7058951	7059650	+	0	NA	3' UTR (NM_025196, exon 4 of 4)	3' UTR (NM_025196, exon 4 of 4)	8764	NM_025196	80273		NM_025196	ENSG00000109519	GRPEL1	GrpE|HMGE|mt-GrpE#1	GrpE like 1, mitochondrial	protein-coding
192550	chr6	25284201	25284400	+	0	NA	intron (NM_001173977, intron 1 of 36)	intron (NM_001173977, intron 1 of 36)	4926	NM_017640	55604		NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding
231831	chr9	132586221	132586950	+	0	NA	intron (NM_020064, intron 1 of 2)	CpG	3979	NM_020064	56751		NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding
21824	chr1	207329851	207330700	+	0	NA	intron (NM_001300904, intron 5 of 10)	intron (NM_001300904, intron 5 of 10)	8597	NM_001300902	1604		NM_000574	ENSG00000196352	CD55	CHAPLE|CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding
127961	chr2	46634701	46635500	+	0	NA	Intergenic	L2a|LINE|L2	17885	NM_014171	9419		NM_014171	ENSG00000119878	CRIPT	HSPC139|RTS3|SSMDF	CXXC repeat containing interactor of PDZ3 domain	protein-coding
17986	chr1	160513751	160514050	+	0	NA	intron (NM_001184714, intron 1 of 7)	L1PA10|LINE|L1	9355	NM_001184716	114836		NM_052931	ENSG00000162739	SLAMF6	CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding
230613	chr9	128625201	128625400	+	0	NA	intron (NM_001375310, intron 47 of 57)	L2c|LINE|L2	31550	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
179968	chr5	846501	847280	+	0	NA	intron (NM_024786, intron 3 of 12)	intron (NM_024786, intron 3 of 12)	4096	NM_024786	79844		NM_024786	ENSG00000188818	ZDHHC11	ZNF399	zinc finger DHHC-type containing 11	protein-coding
45435	chr11	118415651	118416150	+	0	NA	intron (NR_046369, intron 3 of 3)	intron (NR_046369, intron 3 of 3)	2915	NR_046370	100131626		NR_046369		LOC100131626	-	uncharacterized LOC100131626	ncRNA
156581	chr22	41523471	41524180	+	0	NA	intron (NM_001098, intron 11 of 17)	intron (NM_001098, intron 11 of 17)	20645	NM_001018050	171568		NM_138338	ENSG00000100413	POLR3H	C25|RPC22.9|RPC8	RNA polymerase III subunit H	protein-coding
45612	chr11	118906351	118906450	+	0	NA	intron (NM_001378214, intron 4 of 8)	intron (NM_001378214, intron 4 of 8)	4142	NM_182557	283149		NM_182557	ENSG00000186174	BCL9L	B9L|BCL9-2|DLNB11	BCL9 like	protein-coding
131080	chr2	88866151	88866450	+	0	NA	Intergenic	Intergenic	53930	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
125558	chr2	15680821	15681300	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-9722	NR_110201	101926966		NR_110201	ENSG00000231031	LINC01804	-	long intergenic non-protein coding RNA 1804	ncRNA
234106	chrX	9462721	9463550	+	0	NA	promoter-TSS (NM_001139466)	promoter-TSS (NM_001139466)	-160	NM_001139467	6907		NM_005647	ENSG00000101849	TBL1X	CHNG8|EBI|SMAP55|TBL1	transducin beta like 1 X-linked	protein-coding
69436	chr14	94143401	94143850	+	0	NA	Intergenic	Intergenic	-14021	NM_032036	83982		NM_032036	ENSG00000119632	IFI27L2	FAM14A|ISG12B|TLH29	interferon alpha inducible protein 27 like 2	protein-coding
167659	chr3	129827751	129828080	+	0	NA	exon (NM_001128224, exon 3 of 6)	exon (NM_001128224, exon 3 of 6)	-33303	NM_001349273	23023		NM_015008	ENSG00000172765	TMCC1	-	transmembrane and coiled-coil domain family 1	protein-coding
134600	chr2	144327721	144328100	+	0	NA	intron (NM_001376310, intron 1 of 13)	L3b|LINE|CR1	4324	NM_001376318	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
239242	chrY	12982301	12982700	+	0	NA	Intergenic	L1P4a|LINE|L1	76795	NR_136724	8653		NM_004660	ENSG00000067048	DDX3Y	DBY	DEAD-box helicase 3 Y-linked	protein-coding
214064	chr7	143392901	143393100	+	0	NA	intron (NM_005232, intron 16 of 17)	L2b|LINE|L2	10314	NR_106952	102465538		NR_106952	ENSG00000278449	MIR6892	hsa-mir-6892	microRNA 6892	ncRNA
49843	chr12	32666251	32666630	+	0	NA	Intergenic	AluSx3|SINE|Alu	-12760	NM_001278463	10059		NM_005690	ENSG00000087470	DNM1L	DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5	dynamin 1 like	protein-coding
204898	chr7	6091721	6091980	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-13099	NM_032172	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
97890	chr17	45109851	45110150	+	0	NA	TTS (NM_021079)	TTS (NM_021079)	4433	NR_106842	102465470		NR_106842	ENSG00000277249	MIR6784	hsa-mir-6784	microRNA 6784	ncRNA
20499	chr1	198653701	198654250	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	14935	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
5805	chr1	26577951	26578250	+	0	NA	Intergenic	Intergenic	23558	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA
120916	chr19	45637721	45637980	+	0	NA	intron (NR_147903, intron 6 of 19)	AluSq|SINE|Alu	1237	NR_029886	442902		NR_029886	ENSG00000284544	MIR330	MIRN330|hsa-mir-330|mir-330	microRNA 330	ncRNA
106596	chr18	22221201	22221630	+	0	NA	Intergenic	Charlie18a|DNA|hAT-Charlie	51826	NM_005257	2627		NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding
85770	chr16	56928771	56929130	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3192	NM_001010989	9709		NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding
196140	chr6	42426001	42426200	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	25951	NM_001297573	55809		NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding
231337	chr9	130174501	130174700	+	0	NA	intron (NM_014286, intron 1 of 7)	AluSp|SINE|Alu	2196	NM_014286	23413		NM_014286	ENSG00000107130	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding
91541	chr17	5001471	5001630	+	0	NA	intron (NM_006612, intron 5 of 22)	intron (NM_006612, intron 5 of 22)	3600	NM_006612	10749		NM_006612	ENSG00000129250	KIF1C	LTXS1|SATX2|SAX2|SPAX2|SPG58	kinesin family member 1C	protein-coding
23887	chr1	234925701	234926200	+	0	NA	Intergenic	Intergenic	38049	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
101339	chr17	66808171	66808330	+	0	NA	3' UTR (NM_002737, exon 17 of 17)	3' UTR (NM_002737, exon 17 of 17)	21178	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
95549	chr17	36706151	36706600	+	0	NA	Intergenic	Intergenic	104792	NM_024864	79922		NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
26503	chr10	18649351	18649950	+	0	NA	intron (NM_001351116, intron 2 of 11)	intron (NM_001351116, intron 2 of 11)	1937	NM_182543	221078		NM_182543	ENSG00000241058	NSUN6	4933414E04Rik|ARL5B-AS1|MRT82|NOPD1	NOP2/Sun RNA methyltransferase 6	protein-coding
238978	chrX	155466451	155467280	+	0	NA	intron (NR_109985, intron 1 of 3).2	L1MD2|LINE|L1	325	NR_039991	100507404		NR_039991	ENSG00000224533	TMLHE-AS1	-	TMLHE antisense RNA 1	ncRNA
94576	chr17	29659151	29659850	+	0	NA	intron (NM_033389, intron 10 of 14)	L1MC5a|LINE|L1	-38077	NM_032854	84940		NM_032854	ENSG00000167549	CORO6	ClipinE	coronin 6	protein-coding
126247	chr2	27079851	27080100	+	0	NA	intron (NM_007046, intron 1 of 7)	intron (NM_007046, intron 1 of 7)	1360	NM_007046	11117		NM_007046	ENSG00000138080	EMILIN1	EMI|EMILIN|HMN10|HMND10|gp115	elastin microfibril interfacer 1	protein-coding
14855	chr1	146390021	146390280	+	0	NA	Intergenic	LOR1b|LTR|ERV1	13343	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
38428	chr11	45101501	45102030	+	0	NA	intron (NM_001359633, intron 2 of 7)	intron (NM_001359633, intron 2 of 7)	7606	NM_001359633	56981		NM_001256695	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding
134950	chr2	151765821	151766080	+	0	NA	Intergenic	Intergenic	-31463	NM_001164508	4703		NM_004543	ENSG00000183091	NEB	AMC6|NEB177D|NEM2	nebulin	protein-coding
130398	chr2	85321771	85322530	+	0	NA	3' UTR (NM_001206841, exon 4 of 4)	3' UTR (NM_001206841, exon 4 of 4)	5839	NM_001206841	10618		NM_006464	ENSG00000152291	TGOLN2	TGN38|TGN46|TGN48|TGN51|TTGN2|hTGN46|hTGN48|hTGN51	trans-golgi network protein 2	protein-coding
167909	chr3	136162301	136162800	+	0	NA	intron (NM_018133, intron 1 of 1)	AluJb|SINE|Alu	31918	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
138010	chr2	201268301	201268500	+	0	NA	intron (NM_033355, intron 3 of 9)	AluSq2|SINE|Alu	7864	NM_033356	841		NM_001228	ENSG00000064012	CASP8	ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5	caspase 8	protein-coding
78218	chr15	90643671	90643830	+	0	NA	3' UTR (NM_022769, exon 15 of 15)	3' UTR (NM_022769, exon 15 of 15)	-16484	NR_120371	101929765		NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA
197750	chr6	87180971	87181730	+	0	NA	intron (NM_015021, intron 1 of 7)	LTR1B1|LTR|ERV1	25785	NM_001351444	23036		NM_015021	ENSG00000188994	ZNF292	MRD63|MRD64|Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding
97865	chr17	45018571	45019730	+	0	NA	Intergenic	(GCGGC)n|Simple_repeat|Simple_repeat	32482	NM_001128631	79877		NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding
169457	chr3	168011521	168011650	+	0	NA	intron (NM_001308155, intron 13 of 14)	L1PA2|LINE|L1	84339	NM_001308155	27333		NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding
126323	chr2	27351101	27351300	+	0	NA	intron (NM_001521, intron 1 of 19)	AluSx|SINE|Alu	5292	NM_001318909	2976		NM_001521	ENSG00000115207	GTF3C2	TF3C-beta|TFIIIC-BETA|TFIIIC110	general transcription factor IIIC subunit 2	protein-coding
109944	chr19	1352421	1353280	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-2109	NM_001369789	84939		NM_032220	ENSG00000160953	PWWP3A	EXPAND1|HSPC211|MUM-1|MUM1	PWWP domain containing 3A, DNA repair factor	protein-coding
37099	chr11	13276791	13278850	+	0	NA	promoter-TSS (NM_001030273)	promoter-TSS (NM_001030273)	30	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
228728	chr9	109167001	109167200	+	0	NA	exon (NM_014334, exon 1 of 5)	exon (NM_014334, exon 1 of 5)	149	NM_014334	23732		NM_014334	ENSG00000260230	FRRS1L	C9orf4|CG-6|CG6|DEE37|EIEE37	ferric chelate reductase 1 like	protein-coding
226044	chr9	43139271	43139580	+	0	NA	non-coding (NR_160669, exon 4 of 4)	non-coding (NR_160669, exon 4 of 4)	13259	NR_160669	102724904		NR_160669	ENSG00000291167	LOC102724904	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
19531	chr1	176691671	176691830	+	0	NA	TTS (NM_021936)	TTS (NM_021936)	228575	NM_021936	60676		NM_020318	ENSG00000116183	PAPPA2	PAPP-A2|PAPP-E|PAPPE|PLAC3|SSDA	pappalysin 2	protein-coding
158419	chr22	50541721	50541980	+	0	NA	Intergenic	FLAM_C|SINE|Alu	-4049	NM_138433	113730		NM_138433	ENSG00000130487	KLHDC7B	-	kelch domain containing 7B	protein-coding
118499	chr19	35945671	35946030	+	0	NA	3' UTR (NM_024509, exon 3 of 3)	3' UTR (NM_024509, exon 3 of 3)	-1265	NR_136525	105372383		NR_136525		LOC105372383	-	uncharacterized LOC105372383	ncRNA
209194	chr7	75416521	75416780	+	0	NA	TTS (NM_001099415)	TTS (NM_001099415)	6328	NR_033322	155400		NM_001039575	ENSG00000291151	NSUN5P1	NSUN5B|WBSCR20B	NSUN5 pseudogene 1	pseudo
22848	chr1	225463001	225463200	+	0	NA	Intergenic	LTR26|LTR|ERV1	-34245	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
55206	chr12	101781651	101781950	+	0	NA	intron (NM_024312, intron 5 of 20)	L3|LINE|CR1	-42328	NM_153694	50511		NM_153694	ENSG00000139351	SYCP3	COR1|RPRGL4|SCP3|SPGF4	synaptonemal complex protein 3	protein-coding
90763	chr17	2056601	2057550	+	0	NA	exon (NM_001098202, exon 2 of 2)	exon (NM_001098202, exon 2 of 2)	765	NM_001098202	3090		NM_006497	ENSG00000177374	HIC1	ZBTB29|ZNF901|hic-1	HIC ZBTB transcriptional repressor 1	protein-coding
50840	chr12	49119051	49119550	+	0	NA	Intergenic	AluY|SINE|Alu	-8400	NM_001300751	55716		NM_018113	ENSG00000139636	LMBR1L	LIMR	limb development membrane protein 1 like	protein-coding
112563	chr19	6592371	6593150	+	0	NA	Intergenic	Intergenic	-1610	NM_001252	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
131201	chr2	95039271	95041000	+	0	NA	intron (NM_022440, intron 1 of 1)	(ACACAC)n|Simple_repeat|Simple_repeat	14427	NM_002371	4118		NM_002371	ENSG00000172005	MAL	MVP17|VIP17	mal, T cell differentiation protein	protein-coding
58223	chr12	128387801	128388000	+	0	NA	intron (NM_001136103, intron 1 of 8)	intron (NM_001136103, intron 1 of 8)	93808	NR_037406	100500817		NR_037406	ENSG00000265635	MIR3612	-	microRNA 3612	ncRNA
86182	chr16	57859551	57859650	+	0	NA	Intergenic	Intergenic	48963	NM_001278081	388282		NM_001278081	ENSG00000187185	LOC388282	-	uncharacterized LOC388282	ncRNA
187272	chr5	141537851	141538150	+	0	NA	intron (NM_005219, intron 17 of 27)	AluJb|SINE|Alu	-20311	NR_038333	100505658		NR_038333	ENSG00000246422	DIAPH1-AS1	-	DIAPH1 antisense RNA 1	ncRNA
10414	chr1	65265651	65266530	+	0	NA	intron (NM_014787, intron 1 of 18)	CpG	1341	NM_014787	9829		NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding
22141	chr1	212015251	212015350	+	0	NA	intron (NM_015434, intron 4 of 19)	SVA_B|Retroposon|SVA	-20253	NM_001286230	51514		NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding
65867	chr14	55066471	55066780	+	0	NA	3' UTR (NM_144578, exon 4 of 4)	3' UTR (NM_144578, exon 4 of 4)	14978	NM_144578	93487		NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding
151489	chr21	46297241	46298500	+	0	NA	TTS (NM_001314022)	TTS (NM_001314022)	11528	NM_001314022	54059		NM_058181	ENSG00000182362	YBEY	C21orf57	ybeY metalloendoribonuclease	protein-coding
4697	chr1	23103351	23104280	+	0	NA	intron (NM_033631, intron 3 of 4)	(GGGA)n|Simple_repeat|Simple_repeat	59510	NR_036057	100422866		NR_036057	ENSG00000263793	MIR3115	mir-3115	microRNA 3115	ncRNA
185169	chr5	119347901	119348100	+	0	NA	intron (NM_001286814, intron 1 of 1)	intron (NM_001286814, intron 1 of 1)	-6773	NM_001286813	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
24572	chr1	244974871	244975030	+	0	NA	intron (NR_026587, intron 1 of 5)	AluY|SINE|Alu	-4081	NR_111907	101928068		NR_111907		LOC101928068	-	uncharacterized LOC101928068	ncRNA
114267	chr19	11574551	11575200	+	0	NA	3' UTR (NM_001111036, exon 6 of 6)	3' UTR (NM_001111036, exon 6 of 6)	2770	NM_001611	54		NM_001611	ENSG00000102575	ACP5	HPAP|TRACP5a|TRACP5b|TRAP|TRAcP|TrATPase	acid phosphatase 5, tartrate resistant	protein-coding
140944	chr2	237743021	237743430	+	0	NA	intron (NM_001137550, intron 11 of 23)	intron (NM_001137550, intron 11 of 23)	51020	NM_001137553	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
96135	chr17	39662671	39662830	+	0	NA	intron (NM_001165938, intron 13 of 13)	intron (NM_001165938, intron 13 of 13)	-2599	NM_003673	8557		NM_003673	ENSG00000173991	TCAP	CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin	titin-cap	protein-coding
164420	chr3	58630121	58630480	+	0	NA	intron (NR_134853, intron 2 of 3)	intron (NR_134853, intron 2 of 3)	-2690	NM_001282714	11170		NM_007177	ENSG00000168309	FAM107A	DRR1|TU3A	family with sequence similarity 107 member A	protein-coding
212637	chr7	129436401	129436680	+	0	NA	intron (NM_001134336, intron 1 of 19)	intron (NM_001134336, intron 1 of 19)	2108	NM_020704	57464		NM_020704	ENSG00000128578	STRIP2	FAM40B|FAR11B	striatin interacting protein 2	protein-coding
42523	chr11	70650371	70650550	+	0	NA	intron (NM_133266, intron 2 of 10)	intron (NM_133266, intron 2 of 10)	11381	NR_110766	22941		NM_012309	ENSG00000162105	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
25967	chr10	11684001	11685530	+	0	NA	Intergenic	Intergenic	-57617	NM_024693	79746		NM_024693	ENSG00000134463	ECHDC3	-	enoyl-CoA hydratase domain containing 3	protein-coding
140022	chr2	231045451	231045550	+	0	NA	intron (NM_001144994, intron 2 of 2)	Tigger3b|DNA|TcMar-Tigger	7977	NM_001144994	257407		NM_001144994	ENSG00000204128	C2orf72	-	chromosome 2 open reading frame 72	protein-coding
8417	chr1	40424101	40424300	+	0	NA	TTS (NM_001198979)	TTS (NM_001198979)	-25864	NM_001369565	65243		NM_023070	ENSG00000187801	ZFP69B	ZKSCAN23B|ZNF643|ZSCAN54B	ZFP69 zinc finger protein B	protein-coding
138237	chr2	202913651	202913750	+	0	NA	intron (NM_001282911, intron 2 of 15)	intron (NM_001282911, intron 2 of 15)	1425	NM_001322427	79800		NM_024744	ENSG00000138380	CARF	ALS2CR8|NYD-SP24	calcium responsive transcription factor	protein-coding
208239	chr7	65447171	65447350	+	0	NA	Intergenic	LTR13|LTR|ERVK	73405	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
181691	chr5	50582051	50582350	+	0	NA	Intergenic	L1PA10|LINE|L1	-83731	NM_001178055	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
189152	chr5	171384771	171385130	+	0	NA	Intergenic	Intergenic	1810	NR_037474	100500831		NR_037474	ENSG00000264249	MIR3912	mir-3912	microRNA 3912	ncRNA
209929	chr7	92559971	92560200	+	0	NA	TTS (NR_109929)	TTS (NR_109929)	29964	NM_001288584	257415		NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding
89348	chr16	88761171	88761330	+	0	NA	intron (NM_001142864, intron 1 of 50)	MIRb|SINE|MIR	18483	NR_120387	339059		NR_120387	ENSG00000182376	LOC339059	-	uncharacterized LOC339059	ncRNA
139927	chr2	230777451	230778300	+	0	NA	intron (NM_016289, intron 2 of 8)	L1ME4a|LINE|L1	64327	NM_001130850	51719		NM_016289	ENSG00000135932	CAB39	CGI-66|MO25	calcium binding protein 39	protein-coding
233682	chrX	1170401	1170680	+	0	NA	Intergenic	LTR2C|LTR|ERV1	42109	NM_022148	64109		NM_022148	ENSG00000205755	CRLF2	CRL2|CRLF2Y|TSLPR	cytokine receptor like factor 2	protein-coding
2658	chr1	10469471	10469800	+	0	NA	intron (NM_004401, intron 1 of 5)	AluSg|SINE|Alu	2894	NM_004401	1676		NM_004401	ENSG00000160049	DFFA	DFF-45|DFF1|ICAD	DNA fragmentation factor subunit alpha	protein-coding
44982	chr11	116926851	116927900	+	0	NA	exon (NM_001281749, exon 4 of 24)	exon (NM_001281749, exon 4 of 24)	-89425	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
170980	chr3	194583471	194584830	+	0	NA	promoter-TSS (NR_047573)	promoter-TSS (NR_047573)	-118	NR_047573	100507297		NR_047573		TMEM44-AS1	-	TMEM44 antisense RNA 1	ncRNA
62948	chr13	112058071	112058230	+	0	NA	intron (NR_120392, intron 1 of 3)	CpG	-8999	NM_005986	6656		NM_005986	ENSG00000182968	SOX1	-	SRY-box transcription factor 1	protein-coding
82407	chr16	16225051	16225830	+	0	NA	Intergenic	SATR2|Satellite|Satellite	-1946	NM_001171	368		NM_001171	ENSG00000091262	ABCC6	ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7	ATP binding cassette subfamily C member 6	protein-coding
226922	chr9	79581371	79582330	+	0	NA	intron (NM_001351556, intron 4 of 18)	intron (NM_001351556, intron 4 of 18)	8673	NM_001351543	7091		NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4	TLE family member 4, transcriptional corepressor	protein-coding
199841	chr6	127755971	127756130	+	0	NA	intron (NM_001010923, intron 4 of 5).2	AluSz|SINE|Alu	99138	NM_001318531	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
63987	chr14	22303671	22304050	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	128893	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
184290	chr5	96809921	96810680	+	0	NA	intron (NM_001198541, intron 1 of 18)	intron (NM_001198541, intron 1 of 18)	-2111	NM_001349244	51752		NM_016442	ENSG00000164307	ERAP1	A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding
160732	chr3	32455071	32455230	+	0	NA	3' UTR (NM_181472, exon 4 of 4)	3' UTR (NM_181472, exon 4 of 4)	47702	NM_017801	54918		NM_017801	ENSG00000091317	CMTM6	CKLFSF6|PRO2219	CKLF like MARVEL transmembrane domain containing 6	protein-coding
89702	chr16	89400921	89401280	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-29818	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
109022	chr18	79722721	79723630	+	0	NA	intron (NM_048368, intron 10 of 11)	intron (NM_048368, intron 10 of 11)	41745	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
106568	chr18	21732171	21732390	+	0	NA	Intergenic	AluSz|SINE|Alu	-8512	NM_020774	57534		NM_020774	ENSG00000101752	MIB1	DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6	MIB E3 ubiquitin protein ligase 1	protein-coding
236772	chrX	78964701	78965150	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	19534	NM_001324225	27334		NM_014499	ENSG00000078589	P2RY10	LPS2|LYPSR2|P2Y10	P2Y receptor family member 10	protein-coding
207819	chr7	50316121	50316700	+	0	NA	intron (NM_001291837, intron 1 of 6)	intron (NM_001291837, intron 1 of 6)	-2638	NM_001220768	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
3057	chr1	12164651	12165150	+	0	NA	Intergenic	Intergenic	-2043	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
137817	chr2	200376421	200376930	+	0	NA	intron (NM_001282743, intron 2 of 11)	intron (NM_001282743, intron 2 of 11)	67725	NM_001282744	26010		NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding
204866	chr7	5835401	5835630	+	0	NA	intron (NR_023382, intron 2 of 6)	AluJr|SINE|Alu	12355	NR_023382	401303		NR_023382		ZNF815P	ZNF815	zinc finger protein 815, pseudogene	pseudo
29528	chr10	70863671	70863830	+	0	NA	intron (NM_003901, intron 7 of 14)	L1MEd|LINE|L1	24131	NM_001289797	5092		NM_000281	ENSG00000166228	PCBD1	DCOH|PCBD|PCD|PHS	pterin-4 alpha-carbinolamine dehydratase 1	protein-coding
156306	chr22	40536471	40536800	+	0	NA	intron (NM_001282661, intron 3 of 13)	SVA_F|Retroposon|SVA	-2808	NM_001318139	57591		NM_020831	ENSG00000196588	MRTFA	BSAC|MAL|MKL|MKL1|MRTF-A	myocardin related transcription factor A	protein-coding
172154	chr4	1211171	1211530	+	0	NA	TTS (NM_001377190)	TTS (NM_001377190)	1230	NR_104331	285463		NR_104331	ENSG00000280927	CTBP1-AS	PCAT10	CTBP1 antisense RNA	ncRNA
81953	chr16	11848821	11849080	+	0	NA	intron (NM_015659, intron 2 of 8)	AluSz6|SINE|Alu	2592	NM_015659	26156		NM_015659	ENSG00000171490	RSL1D1	CSIG|L12|PBK1|UTP30	ribosomal L1 domain containing 1	protein-coding
103712	chr17	78829421	78830430	+	0	NA	intron (NR_169585, intron 4 of 19)	AluSx3|SINE|Alu	10889	NM_001385169	57602		NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding
147295	chr20	57629271	57630550	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-9484	NM_001160419	81030		NM_030776	ENSG00000124256	ZBP1	C20orf183|DAI|DLM-1|DLM1	Z-DNA binding protein 1	protein-coding
126029	chr2	25347271	25347880	+	0	NA	Intergenic	Intergenic	-4985	NM_175629	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
40082	chr11	62782171	62782330	+	0	NA	exon (NM_006473, exon 8 of 11)	exon (NM_006473, exon 8 of 11)	-5152	NM_001363601	374395		NM_199337	ENSG00000185475	TMEM179B	-	transmembrane protein 179B	protein-coding
11515	chr1	90965951	90966050	+	0	NA	intron (NM_201269, intron 2 of 5)	AluSq|SINE|Alu	55508	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
174832	chr4	48316101	48316380	+	0	NA	Intergenic	Intergenic	-25289	NM_020846	57606		NM_020846	ENSG00000109171	SLAIN2	KIAA1458	SLAIN motif family member 2	protein-coding
130366	chr2	85104201	85104400	+	0	NA	Intergenic	L1MB7|LINE|L1	-29092	NM_031283	83439		NM_031283	ENSG00000152284	TCF7L1	TCF-3|TCF3	transcription factor 7 like 1	protein-coding
162862	chr3	49356851	49357690	+	0	NA	TTS (NM_001329502)	TTS (NM_001329502)	1083	NM_001329502	2876		NM_000581	ENSG00000233276	GPX1	GPXD|GSHPX1	glutathione peroxidase 1	protein-coding
33109	chr10	111076851	111076950	+	0	NA	promoter-TSS (NM_000681)	promoter-TSS (NM_000681)	-129	NM_000681	150		NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|FPLD8|ZNF32	adrenoceptor alpha 2A	protein-coding
73976	chr15	51969601	51970180	+	0	NA	intron (NM_001323903, intron 1 of 12)	L1MB5|LINE|L1	1888	NM_001323904	123169		NM_138792	ENSG00000166477	LEO1	RDL	LEO1 homolog, Paf1/RNA polymerase II complex component	protein-coding
62771	chr13	108269701	108270500	+	0	NA	exon (NM_001145645, exon 1 of 5)	exon (NM_001145645, exon 1 of 5)	382	NM_006573	10673		NM_006573	ENSG00000102524	TNFSF13B	BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4	TNF superfamily member 13b	protein-coding
44791	chr11	113289451	113289800	+	0	NA	Intergenic	Intergenic	-15724	NR_034101	100288346		NR_034101		NCAM1-AS1	-	NCAM1 antisense RNA1	ncRNA
110131	chr19	1598221	1598480	+	0	NA	intron (NM_006830, intron 2 of 2)	AluSp|SINE|Alu	-5485	NM_001281453	53615		NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding
213554	chr7	139109001	139110500	+	0	NA	promoter-TSS (NM_024625)	promoter-TSS (NM_024625)	-30	NM_020119	56829		NM_020119	ENSG00000105939	ZC3HAV1	ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2	zinc finger CCCH-type containing, antiviral 1	protein-coding
238301	chrX	149492501	149492950	+	0	NA	intron (NR_104128, intron 6 of 8)	L2a|LINE|L2	12581	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
223501	chr8	144084471	144085280	+	0	NA	exon (NM_003801, exon 8 of 12)	exon (NM_003801, exon 8 of 12)	2241	NM_003801	8733		NM_003801	ENSG00000197858	GPAA1	GAA1|GPIBD15|hGAA1	glycosylphosphatidylinositol anchor attachment 1	protein-coding
57804	chr12	123120471	123121250	+	0	NA	intron (NM_001300801, intron 1 of 25)	intron (NM_001300801, intron 1 of 25)	-15344	NM_001384660	57605		NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
182138	chr5	56221721	56222030	+	0	NA	intron (NM_024669, intron 2 of 11)	L1PA5|LINE|L1	11455	NM_024669	79722		NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding
88750	chr16	86553551	86554230	+	0	NA	intron (NM_001159379, intron 2 of 7)	LTR12C|LTR|ERV1	1345	NM_022764	64779		NM_022764	ENSG00000103248	MTHFSD	-	methenyltetrahydrofolate synthetase domain containing	protein-coding
238034	chrX	135206521	135206800	+	0	NA	Intergenic	LTR13|LTR|ERVK	-34833	NM_017863	54967		NM_017863	ENSG00000169551	CT55	BJHCC20A|CXorf48|SPGFX7	cancer/testis antigen 55	protein-coding
5507	chr1	25769751	25770050	+	0	NA	intron (NM_001385185, intron 6 of 10)	intron (NM_001385185, intron 6 of 10)	-30293	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
37127	chr11	13336351	13336980	+	0	NA	intron (NM_001351821, intron 3 of 19)	intron (NM_001351821, intron 3 of 19)	58875	NM_001297719	406		NM_001178	ENSG00000133794	BMAL1	ARNTL|ARNTL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	basic helix-loop-helix ARNT like 1	protein-coding
129777	chr2	71132171	71132330	+	0	NA	intron (NM_005791, intron 1 of 10)	L2a|LINE|L2	1616	NM_005791	10199		NM_005791	ENSG00000124383	MPHOSPH10	CT90|MPP10|MPP10P|PPP1R106	M-phase phosphoprotein 10	protein-coding
101033	chr17	64789751	64790080	+	0	NA	intron (NR_024386, intron 8 of 10)	intron (NR_024386, intron 8 of 10)	-7916	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
50134	chr12	45668751	45669450	+	0	NA	Intergenic	Intergenic	58821	NR_028408	400027		NR_028408		LINC00938	-	long intergenic non-protein coding RNA 938	ncRNA
161734	chr3	44235771	44236200	+	0	NA	Intergenic	Intergenic	-5901	NM_001145030	375337		NM_001145030	ENSG00000173769	TOPAZ1	C3orf77	testis and ovary specific TOPAZ 1	protein-coding
179947	chr5	776801	777200	+	0	NA	intron (NR_147095, intron 1 of 16)	intron (NR_147095, intron 1 of 16)	7729	NR_147096	653082		NM_001351303	ENSG00000206077	ZDHHC11B	DHHC-11B	zinc finger DHHC-type containing 11B	protein-coding
139174	chr2	219204071	219204230	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2632	NM_138802	130617		NM_138802	ENSG00000158552	ZFAND2B	AIRAPL	zinc finger AN1-type containing 2B	protein-coding
118477	chr19	35900401	35901150	+	0	NA	promoter-TSS (NM_001365706)	promoter-TSS (NM_001365706)	63	NM_001365706	84807		NM_032721	ENSG00000167604	NFKBID	IkBNS|IkappaBNS|TA-NFKBH	NFKB inhibitor delta	protein-coding
99728	chr17	50911801	50912530	+	0	NA	Intergenic	Intergenic	-44187	NM_001243877	10140		NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding
178333	chr4	145736101	145736600	+	0	NA	Intergenic	Intergenic	56204	NM_001080531	646603		NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
193078	chr6	28789721	28789980	+	0	NA	Intergenic	Intergenic	73827	NR_033379	401242		NR_033379	ENSG00000225595	LINC01623	-	long intergenic non-protein coding RNA 1623	ncRNA
124615	chr2	1140471	1140700	+	0	NA	intron (NM_018968, intron 6 of 16)	intron (NM_018968, intron 6 of 16)	-189193	NR_136151	101060391		NR_136151		SNTG2-AS1	-	SNTG2 antisense RNA 1	ncRNA
208148	chr7	64541621	64541950	+	0	NA	intron (NM_001130022, intron 3 of 3)	L1M3a|LINE|L1	21286	NM_178558	340252		NM_178558	ENSG00000173041	ZNF680	-	zinc finger protein 680	protein-coding
67285	chr14	69354271	69355000	+	0	NA	TTS (NM_001168368)	TTS (NM_001168368)	43664	NM_004450	2079		NM_004450	ENSG00000100632	ERH	DROER	ERH mRNA splicing and mitosis factor	protein-coding
230155	chr9	127755821	127756080	+	0	NA	promoter-TSS (NM_001142534)	promoter-TSS (NM_001142534)	-646	NM_001142533	10044		NM_005489	ENSG00000095370	SH2D3C	CHAT|NSP3|PRO34088|SHEP1	SH2 domain containing 3C	protein-coding
18008	chr1	160557121	160557380	+	0	NA	intron (NM_001184882, intron 1 of 5)	MIRb|SINE|MIR	22246	NM_001184881	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
187994	chr5	149530521	149530980	+	0	NA	intron (NM_001892, intron 2 of 9)	AluSx4|SINE|Alu	19615	NM_001271742	1452		NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding
76327	chr15	74401951	74402050	+	0	NA	Intergenic	Intergenic	9432	NR_106941	102465530		NR_106941	ENSG00000277391	MIR6881	hsa-mir-6881	microRNA 6881	ncRNA
44266	chr11	102266101	102266430	+	0	NA	Intergenic	Intergenic	-51219	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
85934	chr16	57133171	57133330	+	0	NA	intron (NM_152727, intron 12 of 15)	intron (NM_152727, intron 12 of 15)	40667	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
124488	chr19	58564571	58565030	+	0	NA	intron (NM_198055, intron 5 of 5)	intron (NM_198055, intron 5 of 5)	5614	NR_027334	100131691		NR_027334	ENSG00000267858	MZF1-AS1	-	MZF1 antisense RNA 1	ncRNA
157276	chr22	44081051	44081750	+	0	NA	intron (NM_001243385, intron 1 of 12)	intron (NM_001243385, intron 1 of 12)	12283	NM_001243385	29780		NM_013327	ENSG00000188677	PARVB	CGI-56	parvin beta	protein-coding
60221	chr13	40507051	40507350	+	0	NA	Intergenic	Intergenic	-26194	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
12472	chr1	107894771	107894930	+	0	NA	intron (NM_006113, intron 1 of 26)	Charlie16a|DNA|hAT-Charlie	-2373	NR_107006	102465839		NR_107006	ENSG00000275455	MIR7852	hsa-mir-7852	microRNA 7852	ncRNA
128005	chr2	47021151	47021450	+	0	NA	intron (NM_020458, intron 11 of 19)	intron (NM_020458, intron 11 of 19)	-79445	NM_001171508	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
160536	chr3	30663871	30664580	+	0	NA	intron (NM_001024847, intron 4 of 7)	AluJo|SINE|Alu	57624	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
41312	chr11	65884451	65885530	+	0	NA	exon (NM_198897, exon 7 of 10)	exon (NM_198897, exon 7 of 10)	3481	NM_198897	9158		NM_004214	ENSG00000172500	FIBP	FGFIBP|FIBP-1|TROFAS	FGF1 intracellular binding protein	protein-coding
19777	chr1	182258951	182259900	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	54636	NR_104175	400799		NR_104175		LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
141024	chr2	238173701	238173930	+	0	NA	intron (NM_030768, intron 9 of 11)	intron (NM_030768, intron 9 of 11)	14845	NM_001291832	151176		NM_152521	ENSG00000178752	ERFE	C1QTNF15|CTRP15|FAM132B	erythroferrone	protein-coding
103831	chr17	79398801	79399400	+	0	NA	intron (NM_001082575, intron 2 of 14)	MLT1C|LTR|ERVL-MaLR	117048	NM_001082575	146713		NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding fox-1 homolog 3	protein-coding
95287	chr17	35523451	35524700	+	0	NA	intron (NM_001363830, intron 1 of 4)	intron (NM_001363830, intron 1 of 4)	13786	NM_001363830	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
79079	chr16	170521	170780	+	0	NA	Intergenic	AluSp|SINE|Alu	-2226	NM_000517	3040		NM_000517	ENSG00000188536	HBA2	ECYT7|HBA-T2|HBH	hemoglobin subunit alpha 2	protein-coding
89506	chr16	89159651	89159950	+	0	NA	non-coding (NR_024347, exon 2 of 4)	non-coding (NR_024347, exon 2 of 4)	580	NR_024347	283860		NM_173617	ENSG00000180422	LINC00304	C16orf81|NCRNA00304	long intergenic non-protein coding RNA 304	ncRNA
160811	chr3	33021071	33021430	+	0	NA	intron (NM_000404, intron 12 of 15)	intron (NM_000404, intron 12 of 15)	69606	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
1391	chr1	2540621	2541250	+	0	NA	Intergenic	CpG	-10672	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
236576	chrX	72713601	72714250	+	0	NA	5' UTR (NM_002637, exon 1 of 32)	5' UTR (NM_002637, exon 1 of 32)	256	NM_001122670	5255		NM_002637	ENSG00000067177	PHKA1	PHKA	phosphorylase kinase regulatory subunit alpha 1	protein-coding
61878	chr13	77286851	77287150	+	0	NA	intron (NM_015057, intron 3 of 82)	AluY|SINE|Alu	40094	NM_015057	23077		NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|PHR1|Phr	MYC binding protein 2	protein-coding
238850	chrX	154474901	154475300	+	0	NA	3' UTR (NM_017514, exon 33 of 33)	3' UTR (NM_017514, exon 33 of 33)	4157	NM_006014	8270		NM_006014	ENSG00000196976	LAGE3	CVG5|DXS9879E|DXS9951E|ESO3|GAMOS2|ITBA2|Pcc1	L antigen family member 3	protein-coding
13497	chr1	114725551	114725930	+	0	NA	intron (NM_001242891, intron 15 of 20)	AluJb|SINE|Alu	-8969	NM_002524	4893		NM_002524	ENSG00000213281	NRAS	ALPS4|CMNS|KRAS|N-ras|NCMS|NRAS1|NS6	NRAS proto-oncogene, GTPase	protein-coding
199396	chr6	116392471	116393250	+	0	NA	intron (NM_001322944, intron 1 of 4)	intron (NM_001322944, intron 1 of 4)	-21141	NR_148944	100287467		NR_148944		LOC100287467	-	uncharacterized LOC100287467	ncRNA
146856	chr20	51440051	51440150	+	0	NA	intron (NM_173091, intron 6 of 9)	AluSq2|SINE|Alu	12877	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
161633	chr3	43294671	43295300	+	0	NA	intron (NM_001330750, intron 1 of 4)	intron (NM_001330750, intron 1 of 4)	8445	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
103516	chr17	78445401	78446080	+	0	NA	intron (NM_173628, intron 69 of 80)	intron (NM_173628, intron 69 of 80)	-39170	NR_102401	100996295		NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
148570	chr20	64327521	64328380	+	0	NA	Intergenic	CpG	37565	NR_040415	107126285		NR_040415		SEPTIN14P20	C20orf69|LINC00266-1|NCRNA00266|NCRNA00266-1|RBRP|SEPT14P20|bA476I15.3	septin 14 pseudogene 20	pseudo
134878	chr2	148816801	148817200	+	0	NA	Intergenic	Intergenic	-58227	NM_004522	3800		NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
158571	chr3	4570771	4571180	+	0	NA	intron (NM_002222, intron 4 of 57)	MLT1H|LTR|ERVL-MaLR	77627	NM_001378452	3708		NM_002222	ENSG00000150995	ITPR1	ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29	inositol 1,4,5-trisphosphate receptor type 1	protein-coding
99183	chr17	49469901	49470980	+	0	NA	Intergenic	CpG	-8691	NR_110805	101927207		NR_110805	ENSG00000249497	LINC02075	-	long intergenic non-protein coding RNA 2075	ncRNA
7809	chr1	36277551	36277850	+	0	NA	intron (NM_001321471, intron 3 of 12)	intron (NM_001321471, intron 3 of 12)	-28668	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
200378	chr6	134245751	134246130	+	0	NA	intron (NM_001143676, intron 2 of 13)	intron (NM_001143676, intron 2 of 13)	-68079	NM_001143677	6446		NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding
169622	chr3	171269621	171270480	+	0	NA	intron (NM_001161560, intron 2 of 31)	(AC)n|Simple_repeat|Simple_repeat	-163291	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
108998	chr18	79697351	79697730	+	0	NA	intron (NM_001318511, intron 3 of 11)	intron (NM_001318511, intron 3 of 11)	16110	NM_001202504	9150		NM_004715	ENSG00000060069	CTDP1	CCFDN|FCP1	CTD phosphatase subunit 1	protein-coding
6635	chr1	28926071	28926230	+	0	NA	intron (NM_001376013, intron 1 of 20)	AluSx|SINE|Alu	11574	NM_001166006	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
10889	chr1	78645801	78646400	+	0	NA	TTS (NM_006820)	TTS (NM_006820)	-3689	NR_135640	10561		NM_006417	ENSG00000137965	IFI44	MTAP44|TLDC5|p44	interferon induced protein 44	protein-coding
107353	chr18	45900371	45900930	+	0	NA	intron (NM_020964, intron 26 of 43)	intron (NM_020964, intron 26 of 43)	66679	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
174711	chr4	42640971	42641400	+	0	NA	intron (NM_001105529, intron 1 of 35)	intron (NM_001105529, intron 1 of 35)	15920	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
9678	chr1	52825871	52826130	+	0	NA	3' UTR (NM_024646, exon 14 of 14)	3' UTR (NM_024646, exon 14 of 14)	-16760	NM_001307931	440590		NM_001004339	ENSG00000203995	ZYG11A	ZYG11	zyg-11 family member A, cell cycle regulator	protein-coding
53802	chr12	69244601	69245280	+	0	NA	intron (NM_001300947, intron 1 of 10)	Tigger3b|DNA|TcMar-Tigger	5371	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
192886	chr6	27485101	27485700	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-12282	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
61171	chr13	49113071	49113230	+	0	NA	intron (NM_014923, intron 1 of 23)	(TCTCT)n|Simple_repeat|Simple_repeat	2833	NM_014923	22862		NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
65179	chr14	49608551	49608850	+	0	NA	intron (NM_152329, intron 3 of 3)	MER5A|DNA|hAT-Charlie	9760	NM_152329	122769		NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding
182249	chr5	57180901	57181850	+	0	NA	intron (NM_001331037, intron 2 of 12)	intron (NM_001331037, intron 2 of 12)	5927	NM_001127235	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
41588	chr11	66347171	66349300	+	0	NA	promoter-TSS (NM_006876)	promoter-TSS (NM_006876)	244	NR_135761	102724064		NR_135761	ENSG00000255468	B4GAT1-DT	-	B4GAT1 divergent transcript	ncRNA
64146	chr14	22884871	22885030	+	0	NA	exon (NM_173527, exon 2 of 5)	exon (NM_173527, exon 2 of 5)	1728	NM_173527	161253		NM_173527	ENSG00000139890	REM2	-	RRAD and GEM like GTPase 2	protein-coding
148243	chr20	63640451	63640550	+	0	NA	non-coding (NR_075070, exon 5 of 5)	non-coding (NR_075070, exon 5 of 5)	12266	NM_001276310	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
177515	chr4	118282671	118283000	+	0	NA	exon (NM_003619, exon 12 of 13)	exon (NM_003619, exon 12 of 13)	3645	NR_002963	677809		NR_002963	ENSG00000275994	SNORA24	ACA24|SNORA24A	small nucleolar RNA, H/ACA box 24	snoRNA
192507	chr6	25008551	25008850	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	33588	NM_001286446	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
20563	chr1	198719021	198719280	+	0	NA	intron (NM_002838, intron 14 of 32)	L1ME4a|LINE|L1	80110	NR_052021	5788		NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|IMD105|L-CA|LCA|LY5|T200	protein tyrosine phosphatase receptor type C	protein-coding
200651	chr6	137040301	137041080	+	0	NA	intron (NM_001278724, intron 1 of 5)	L1MC4a|LINE|L1	3622	NM_001278722	53832		NM_014432	ENSG00000016402	IL20RA	CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA	interleukin 20 receptor subunit alpha	protein-coding
188771	chr5	157613571	157614130	+	0	NA	Intergenic	Intergenic	-38075	NM_033274	8728		NM_023038	ENSG00000135074	ADAM19	FKSG34|MADDAM|MLTNB	ADAM metallopeptidase domain 19	protein-coding
68159	chr14	75656971	75657130	+	0	NA	intron (NM_007176, intron 2 of 4)	intron (NM_007176, intron 2 of 4)	3826	NM_007176	11161		NM_007176	ENSG00000133935	ERG28	C14orf1|NET51	ergosterol biosynthesis 28 homolog	protein-coding
199368	chr6	116251721	116252080	+	0	NA	3' UTR (NM_021648, exon 1 of 1)	3' UTR (NM_021648, exon 1 of 1)	2175	NM_021648	23270		NM_021648	ENSG00000187189	TSPYL4	dJ486I3.2	TSPY like 4	protein-coding
115170	chr19	14426451	14426750	+	0	NA	Intergenic	AluSg|SINE|Alu	-6706	NM_002741	5585		NM_002741	ENSG00000123143	PKN1	DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1	protein kinase N1	protein-coding
106792	chr18	23873821	23874380	+	0	NA	intron (NM_000227, intron 1 of 37)	intron (NM_000227, intron 1 of 37)	1080	NM_001127718	3909		NM_000227	ENSG00000053747	LAMA3	BM600|E170|JEB2A|JEB2B|JEB2C|LAMNA|LOCS	laminin subunit alpha 3	protein-coding
148327	chr20	63756571	63757500	+	0	NA	intron (NM_025224, intron 3 of 4)	L1ME3|LINE|L1	17259	NM_020062	56731		NM_020062	ENSG00000125520	SLC2A4RG	GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19	SLC2A4 regulator	protein-coding
113306	chr19	8567871	8568130	+	0	NA	intron (NM_012335, intron 1 of 27)	intron (NM_012335, intron 1 of 27)	9442	NM_001348355	4542		NM_012335	ENSG00000142347	MYO1F	-	myosin IF	protein-coding
215676	chr8	732351	732950	+	0	NA	Intergenic	FRAM|SINE|Alu	-1426	NM_001303100	157697		NM_207332	ENSG00000104714	ERICH1	HSPC319	glutamate rich 1	protein-coding
108966	chr18	79527851	79528150	+	0	NA	3' UTR (NM_001278672, exon 9 of 9)	3' UTR (NM_001278672, exon 9 of 9)	-51282	NR_148949	284240		NR_148949		LOC284240	-	uncharacterized LOC284240	ncRNA
200901	chr6	139111521	139111980	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-23330	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
194203	chr6	32175271	32176470	+	0	NA	5' UTR (NM_006411, exon 1 of 7).6	5' UTR (NM_006411, exon 1 of 7).6	214	NM_006411	10554		NM_006411	ENSG00000204310	AGPAT1	1-AGPAT1|G15|LPAAT-alpha|LPAATA|LPLAT1	1-acylglycerol-3-phosphate O-acyltransferase 1	protein-coding
107059	chr18	32531151	32531490	+	0	NA	Intergenic	Intergenic	19657	NR_003558	441818		NR_003558	ENSG00000293029	WBP11P1	HsT3017	WBP11 pseudogene 1	pseudo
237057	chrX	103404371	103404980	+	0	NA	Intergenic	Intergenic	27637	NM_014380	27018		NM_014380	ENSG00000166681	BEX3	Bex|DXS6984E|HGR74|NADE|NGFRAP1	brain expressed X-linked 3	protein-coding
129799	chr2	71353151	71353450	+	0	NA	intron (NM_014497, intron 2 of 27)	intron (NM_014497, intron 2 of 27)	21518	NM_014497	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
21978	chr1	209627321	209627960	+	0	NA	intron (NM_001017402, intron 10 of 21)	intron (NM_001017402, intron 10 of 21)	-4130	NR_036213	100422894		NR_036213	ENSG00000283876	MIR4260	-	microRNA 4260	ncRNA
186302	chr5	134571471	134571830	+	0	NA	intron (NM_001289985, intron 9 of 11)	AluSg|SINE|Alu	45542	NM_015288	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
231441	chr9	131258501	131258980	+	0	NA	3' UTR (NM_033387, exon 2 of 2)	3' UTR (NM_033387, exon 2 of 2)	17770	NM_033387	286336		NM_033387	ENSG00000126882	FAM78A	C9orf59	family with sequence similarity 78 member A	protein-coding
180245	chr5	1636121	1636650	+	0	NA	Intergenic	Intergenic	-2380	NR_003713	728613		NR_003713		PDCD6P1	-	PDCD6 pseudogene 1	pseudo
219428	chr8	71840401	71840950	+	0	NA	TTS (NM_005098)	TTS (NM_005098)	-2448	NR_033652	100132891		NR_033651	ENSG00000235531	MSC-AS1	MAT1	MSC antisense RNA 1	ncRNA
182027	chr5	55538321	55539250	+	0	NA	Intergenic	Intergenic	-3707	NR_103485	8611		NM_003711	ENSG00000067113	PLPP1	LLP1a|LPP1|PAP-2a|PAP2|PPAP2A	phospholipid phosphatase 1	protein-coding
94772	chr17	30903051	30903350	+	0	NA	intron (NM_024683, intron 2 of 3)	intron (NM_024683, intron 2 of 3)	3038	NM_024683	79736		NM_024683	ENSG00000172171	TEFM	C17orf42|COXPD58	transcription elongation factor, mitochondrial	protein-coding
141942	chr20	1271801	1272000	+	0	NA	intron (NM_014723, intron 2 of 5)	Charlie18a|DNA|hAT-Charlie	5606	NM_001318234	9751		NM_014723	ENSG00000101298	SNPH	-	syntaphilin	protein-coding
7	chr1	17171	17730	+	0	NA	promoter-TSS (NR_106918)	promoter-TSS (NR_106918)	-14	NR_107063	102465910		NR_107063	ENSG00000275449	MIR6859-3	hsa-mir-6859-3	microRNA 6859-3	ncRNA
178039	chr4	139560471	139561030	+	0	NA	Intergenic	Intergenic	-3981	NM_001306199	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
137254	chr2	192190551	192190730	+	0	NA	intron (NM_001305145, intron 2 of 3)	intron (NM_001305145, intron 2 of 3)	4293	NM_016192	23671		NM_016192	ENSG00000144339	TMEFF2	CT120.2|HPP1|TENB2|TPEF|TR|TR-2	transmembrane protein with EGF like and two follistatin like domains 2	protein-coding
226407	chr9	70417951	70419700	+	0	NA	Intergenic	Intergenic	-4168	NM_001206	687		NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	KLF transcription factor 9	protein-coding
193934	chr6	31650601	31650950	+	0	NA	intron (NM_080702, intron 2 of 24).6	intron (NM_080702, intron 2 of 24).6	1615	NM_001098534	7917		NM_004639	ENSG00000204463	BAG6	BAG-6|BAT3|D6S52E|G3	BAG cochaperone 6	protein-coding
165595	chr3	101643801	101645130	+	0	NA	Intergenic	MER41B|LTR|ERV1	-31965	NR_024407	100009676		NR_024407	ENSG00000256628	ZBTB11-AS1	-	ZBTB11 antisense RNA 1	ncRNA
77530	chr15	84719171	84719330	+	0	NA	Intergenic	AluJo|SINE|Alu	-2790	NM_001271920	23478		NM_014300	ENSG00000140612	SEC11A	1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding
56441	chr12	113465101	113465500	+	0	NA	intron (NM_022363, intron 4 of 4)	CpG	6571	NM_022363	64211		NM_022363	ENSG00000089116	LHX5	-	LIM homeobox 5	protein-coding
207602	chr7	44972521	44973030	+	0	NA	intron (NM_033054, intron 5 of 21)	intron (NM_033054, intron 5 of 21)	6240	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
232159	chr9	134116501	134116700	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-18599	NM_001384414	11091		NM_017588	ENSG00000196363	WDR5	BIG-3|BIG3|CFAP89|SWD3	WD repeat domain 5	protein-coding
9910	chr1	54407401	54408550	+	0	NA	Intergenic	Intergenic	-1581	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
139402	chr2	222319101	222319600	+	0	NA	non-coding (NR_136638, exon 1 of 2)	non-coding (NR_136638, exon 1 of 2)	879	NR_136642	440934		NR_136638	ENSG00000291155	CT75	-	cancer/testis associated transcript 75	ncRNA
102157	chr17	75125601	75125800	+	0	NA	intron (NM_024585, intron 2 of 2)	AluSx|SINE|Alu	6042	NR_045513	30833		NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding
155048	chr22	37494101	37494300	+	0	NA	intron (NM_014550, intron 15 of 19)	intron (NM_014550, intron 15 of 19)	-7813	NM_001166343	4242		NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
62537	chr13	99601421	99602280	+	0	NA	Intergenic	AluSx|SINE|Alu	-4814	NM_206808	171425		NM_206808	ENSG00000125246	CLYBL	CLB	citramalyl-CoA lyase	protein-coding
187129	chr5	140427771	140428600	+	0	NA	intron (NM_020690, intron 1 of 35)	SVA_D|Retroposon|SVA	26352	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
21741	chr1	206809521	206809800	+	0	NA	intron (NM_153758, intron 2 of 6)	intron (NM_153758, intron 2 of 6)	-19217	NM_013371	29949		NM_013371	ENSG00000142224	IL19	IL-10C|MDA1|NG.1|ZMDA1	interleukin 19	protein-coding
25749	chr10	9294201	9294400	+	0	NA	intron (NR_120635, intron 2 of 4)	intron (NR_120635, intron 2 of 4)	1293	NR_120635	101928272		NR_120635		LOC101928272	-	uncharacterized LOC101928272	ncRNA
72443	chr15	31887301	31887500	+	0	NA	intron (NR_038253, intron 2 of 7)	LTR1A1|LTR|ERV1	-16727	NM_130901	161725		NM_130901	ENSG00000169918	OTUD7A	C15orf16|C16ORF15|CEZANNE2|NEDHS|OTUD7	OTU deubiquitinase 7A	protein-coding
96703	chr17	41496651	41497050	+	0	NA	Intergenic	Intergenic	-6986	NM_003771	8689		NM_003771	ENSG00000126337	KRT36	HA6|KRTHA6|hHa6	keratin 36	protein-coding
216075	chr8	10729921	10730930	+	0	NA	promoter-TSS (NM_031439)	promoter-TSS (NM_031439)	86	NM_031439	83595		NM_031439	ENSG00000171056	SOX7	-	SRY-box transcription factor 7	protein-coding
24776	chr1	248862721	248863880	+	0	NA	Intergenic	MER52A|LTR|ERV1	-4215	NM_001350072	55657		NM_017865	ENSG00000171163	ZNF692	AREBP|Zfp692	zinc finger protein 692	protein-coding
159156	chr3	12768771	12768950	+	0	NA	intron (NM_001284406, intron 1 of 11)	LTR12C|LTR|ERV1	597	NM_001284406	55287		NM_018306	ENSG00000088726	TMEM40	-	transmembrane protein 40	protein-coding
207952	chr7	54398301	54398500	+	0	NA	Intergenic	AluJr|SINE|Alu	67703	NR_120516	102723605		NR_120515	ENSG00000231427	LINC01445	-	long intergenic non-protein coding RNA 1445	ncRNA
150125	chr21	37533171	37533530	+	0	NA	Intergenic	LTR41|LTR|ERVL	113051	NM_130438	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
182276	chr5	57219251	57219930	+	0	NA	intron (NM_001331037, intron 3 of 12)	intron (NM_001331037, intron 3 of 12)	5516	NM_001127236	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
135771	chr2	169688751	169689180	+	0	NA	intron (NM_001085447, intron 1 of 8)	THE1A|LTR|ERVL-MaLR	5440	NM_001085447	129881		NM_001085447	ENSG00000154479	CFAP210	C2orf77|CCDC173	cilia and flagella associated protein 210	protein-coding
26714	chr10	22665101	22665850	+	0	NA	intron (NM_005028, intron 1 of 9)	AluJo|SINE|Alu	48633	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
171803	chr4	575201	575680	+	0	NA	exon (NM_001362796, exon 1 of 1)	exon (NM_001362796, exon 1 of 1)	855	NM_001362796	112441426		NM_001362796	ENSG00000273238	TMEM271	-	transmembrane protein 271	protein-coding
105258	chr17	82440371	82440730	+	0	NA	intron (NM_001369487, intron 11 of 14)	intron (NM_001369487, intron 11 of 14)	9176	NM_001193655	79415		NM_024510	ENSG00000178927	CYBC1	C17orf62|CGD5|Eros	cytochrome b-245 chaperone 1	protein-coding
126296	chr2	27217001	27218680	+	0	NA	TTS (NM_016085)	TTS (NM_016085)	450	NM_001306079	790		NM_004341	ENSG00000084774	CAD	CDG1Z|DEE50|EIEE50|GATD4	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding
121763	chr19	47759471	47759630	+	0	NA	intron (NR_132382, intron 2 of 2)	AluSx|SINE|Alu	3697	NR_003048	692091		NR_003048	ENSG00000221803	SNORD23	HBII-115	small nucleolar RNA, C/D box 23	snoRNA
152994	chr22	23173651	23174380	+	0	NA	Intergenic	Intergenic	-6494	NM_004327	613		NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR activator of RhoGEF and GTPase	protein-coding
104002	chr17	80099151	80099800	+	0	NA	TTS (NR_039607)	TTS (NR_039607)	647	NR_039607	100616121		NR_039607	ENSG00000265561	MIR1268B	-	microRNA 1268b	ncRNA
112914	chr19	7648701	7649200	+	0	NA	Intergenic	AluJr|SINE|Alu	11840	NM_001127396	6813		NM_006949	ENSG00000076944	STXBP2	FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122|unc-18B	syntaxin binding protein 2	protein-coding
101682	chr17	68383621	68384350	+	0	NA	intron (NM_001352901, intron 8 of 11)	intron (NM_001352901, intron 8 of 11)	-29638	NM_001278433	5573		NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|Prkar1alpha|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding
26675	chr10	22621171	22621330	+	0	NA	intron (NM_005028, intron 1 of 9)	MLT1K|LTR|ERVL-MaLR	92858	NM_001330062	5305		NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding
11840	chr1	92955801	92956250	+	0	NA	intron (NM_001006605, intron 1 of 4)	AluJb|SINE|Alu	5437	NM_001006605	388650		NM_001006605	ENSG00000154511	DIPK1A	FAM69A	divergent protein kinase domain 1A	protein-coding
115723	chr19	16245051	16245150	+	0	NA	3' UTR (NM_032493, exon 12 of 12)	3' UTR (NM_032493, exon 12 of 12)	47189	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
51414	chr12	52010201	52010780	+	0	NA	promoter-TSS (NM_001271856)	promoter-TSS (NM_001271856)	-2	NM_001271856	160622		NM_181711	ENSG00000161835	TAMALIN	GRASP	trafficking regulator and scaffold protein tamalin	protein-coding
191066	chr6	3359221	3359480	+	0	NA	intron (NM_001382320, intron 1 of 1)	intron (NM_001382320, intron 1 of 1)	-35200	NM_001382321	63027		NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding
42202	chr11	68008671	68009230	+	0	NA	intron (NM_001161473, intron 1 of 9)	intron (NM_001161473, intron 1 of 9)	403	NM_001161473	221		NM_000694	ENSG00000006534	ALDH3B1	ALDH4|ALDH7	aldehyde dehydrogenase 3 family member B1	protein-coding
175818	chr4	77861021	77862300	+	0	NA	Intergenic	L2c|LINE|L2	-1170	NM_020236	65008		NM_020236	ENSG00000169288	MRPL1	BM022|L1MT|MRP-L1|uL1m	mitochondrial ribosomal protein L1	protein-coding
39039	chr11	47846271	47846650	+	0	NA	intron (NR_134636, intron 2 of 35)	L2c|LINE|L2	1890	NR_134636	23279		NM_015231	ENSG00000030066	NUP160	NPHS19	nucleoporin 160	protein-coding
106547	chr18	21605671	21605830	+	0	NA	Intergenic	Intergenic	-5046	NM_052911	114799		NM_052911	ENSG00000141446	ESCO1	A930014I12Rik|CTF|ECO1|EFO1|ESO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding
17591	chr1	156862371	156862730	+	0	NA	intron (NM_002529, intron 1 of 16)	intron (NM_002529, intron 1 of 16)	1671	NM_002529	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
7832	chr1	36311401	36311800	+	0	NA	intron (NM_024676, intron 7 of 12)	intron (NM_024676, intron 7 of 12)	4493	NM_024676	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
24256	chr1	236393371	236394230	+	0	NA	promoter-TSS (NM_145861)	promoter-TSS (NM_145861)	-486	NM_145861	128178		NM_080738	ENSG00000186197	EDARADD	CR|ECTD11A|ECTD11B|ED3|EDA3	EDAR associated via death domain	protein-coding
5784	chr1	26536801	26537000	+	0	NA	intron (NM_002953, intron 1 of 21)	intron (NM_002953, intron 1 of 21)	-6212	NM_001330441	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
236549	chrX	72238621	72239480	+	0	NA	promoter-TSS (NM_017669)	promoter-TSS (NM_017669)	-23	NM_017669	54821		NM_017669	ENSG00000186871	ERCC6L	PICH|RAD26L	ERCC excision repair 6 like, spindle assembly checkpoint helicase	protein-coding
36953	chr11	11149321	11150830	+	0	NA	Intergenic	Intergenic	203175	NM_001256686	283106		NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding
122611	chr19	49803051	49803150	+	0	NA	intron (NM_014203, intron 17 of 23)	intron (NM_014203, intron 17 of 23)	10192	NM_001363663	80199		NM_025129	ENSG00000010361	FUZ	CPLANE3|FY|NTD	fuzzy planar cell polarity protein	protein-coding
108612	chr18	75365871	75366050	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	61743	NM_001037331	284274		NM_001037331	ENSG00000206026	SMIM21	C18orf62	small integral membrane protein 21	protein-coding
111855	chr19	4596271	4596730	+	0	NA	Intergenic	Intergenic	-36816	NM_032108	10501		NM_020241	ENSG00000167680	SEMA6B	EPM11|SEM-SEMA-Y|SEM-SEMA-Z|SEMA-VIB|SEMAN|semaZ	semaphorin 6B	protein-coding
115624	chr19	16087851	16088150	+	0	NA	intron (NM_001367837, intron 3 of 7)	intron (NM_001367837, intron 3 of 7)	10984	NM_001367838	7171		NM_003290	ENSG00000167460	TPM4	BDPLT25|HEL-S-108	tropomyosin 4	protein-coding
233033	chr9	137039951	137040250	+	0	NA	intron (NM_015392, intron 7 of 8)	intron (NM_015392, intron 7 of 8)	6077	NM_015392	56654		NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
134907	chr2	149583501	149583700	+	0	NA	intron (NM_015702, intron 2 of 7)	L2|LINE|L2	-3758	NR_110240	101929231		NR_110240	ENSG00000231969	MMADHC-DT	-	MMADHC divergent transcript	ncRNA
204909	chr7	6157121	6157380	+	0	NA	TTS (NM_001365764)	TTS (NM_001365764)	14887	NM_001367582	9265		NM_004227	ENSG00000008256	CYTH3	ARNO3|GRP1|PSCD3|cytohesin-3	cytohesin 3	protein-coding
238782	chrX	154365971	154367350	+	0	NA	intron (NM_001110556, intron 6 of 47)	intron (NM_001110556, intron 6 of 47)	7974	NM_001110556	2316		NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding
121664	chr19	47496401	47496600	+	0	NA	intron (NR_038457, intron 1 of 8)	intron (NR_038457, intron 1 of 8)	12218	NR_038452	100505681		NR_038452		NAPA-AS1	-	NAPA antisense RNA 1	ncRNA
157249	chr22	43385521	43386050	+	0	NA	Intergenic	Intergenic	-14546	NR_146918	105373054		NR_146918	ENSG00000236117	LINC01639	-	long intergenic non-protein coding RNA 1639	ncRNA
148821	chr21	8380021	8381130	+	0	NA	promoter-TSS (NR_038958).2	promoter-TSS (NR_038958).2	-90	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
37621	chr11	20354971	20355900	+	0	NA	Intergenic	Intergenic	-8250	NM_006410	10553		NM_006410	ENSG00000109854	HTATIP2	CC3|SDR44U1|TIP30	HIV-1 Tat interactive protein 2	protein-coding
94434	chr17	29147371	29147850	+	0	NA	intron (NM_001346765, intron 2 of 42)	intron (NM_001346765, intron 2 of 42)	-7221	NM_001346768	399687		NM_004740	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210|TIAF1	myosin XVIIIA	protein-coding
49884	chr12	39273121	39273480	+	0	NA	Intergenic	Intergenic	169820	NM_001173463	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
220117	chr8	94636101	94636300	+	0	NA	Intergenic	Intergenic	3267	NR_034034	100288748		NR_034034	ENSG00000261437	LINC02894	-	long intergenic non-protein coding RNA 2894	ncRNA
197707	chr6	85678271	85679750	+	0	NA	promoter-TSS (NR_003038)	promoter-TSS (NR_003038)	-277	NR_003038	387066		NR_003038	ENSG00000203875	SNHG5	C6orf160|LINC00044|NCRNA00044|U50HG	small nucleolar RNA host gene 5	ncRNA
218553	chr8	54100871	54103650	+	0	NA	promoter-TSS (NM_001279359)	promoter-TSS (NM_001279359)	-243	NM_001279356	10434		NM_006330	ENSG00000120992	LYPLA1	APT-1|APT1|LPL-I|LPL1|hAPT1	lysophospholipase 1	protein-coding
172715	chr4	2800221	2800650	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	7350	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
169400	chr3	160687001	160687200	+	0	NA	Intergenic	Intergenic	9940	NM_025047	80117		NM_025047	ENSG00000179674	ARL14	ARF7	ADP ribosylation factor like GTPase 14	protein-coding
18173	chr1	160801971	160802800	+	0	NA	3' UTR (NM_001033667, exon 3 of 3)	3' UTR (NM_001033667, exon 3 of 3)	6211	NM_001261456	4063		NM_002348	ENSG00000122224	LY9	CD229|SLAMF3|hly9|mLY9	lymphocyte antigen 9	protein-coding
68357	chr14	77714101	77714500	+	0	NA	intron (NR_052025, intron 3 of 4)	AluJb|SINE|Alu	6197	NM_031210	81892		NM_031210	ENSG00000119705	SLIRP	C14orf156|DC50|PD04872	SRA stem-loop interacting RNA binding protein	protein-coding
9089	chr1	45010001	45011500	+	0	NA	intron (NM_024602, intron 1 of 20)	CpG	574	NM_024602	79654		NM_024602	ENSG00000126107	HECTD3	-	HECT domain E3 ubiquitin protein ligase 3	protein-coding
125921	chr2	25039951	25040480	+	0	NA	TTS (NR_034113)	TTS (NR_034113)	-1861	NM_014971	22979		NM_014971	ENSG00000084710	EFR3B	KIAA0953	EFR3 homolog B	protein-coding
67496	chr14	70934571	70935330	+	0	NA	intron (NM_014982, intron 1 of 35)	intron (NM_014982, intron 1 of 35)	27491	NM_014982	22990		NM_014982	ENSG00000100731	PCNX1	PCNX|PCNXL1|pecanex	pecanex 1	protein-coding
94252	chr17	28687101	28687400	+	0	NA	intron (NM_003170, intron 22 of 36)	intron (NM_003170, intron 22 of 36)	22854	NM_001366303	147011		NM_152465	ENSG00000167525	PROCA1	-	protein interacting with cyclin A1	protein-coding
231712	chr9	131737451	131738050	+	0	NA	promoter-TSS (NM_005312)	promoter-TSS (NM_005312)	-303	NM_005312	2889		NM_005312	ENSG00000107263	RAPGEF1	C3G|GRF2	Rap guanine nucleotide exchange factor 1	protein-coding
204659	chr7	5431371	5431530	+	0	NA	Intergenic	AluJr|SINE|Alu	-2523	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
134657	chr2	144454621	144455430	+	0	NA	intron (NM_014795, intron 2 of 9)	intron (NM_014795, intron 2 of 9)	-64589	NR_040248	100303491		NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA
111961	chr19	4827571	4828450	+	0	NA	intron (NM_001385680, intron 1 of 2)	intron (NM_001385680, intron 1 of 2)	3702	NM_001385680	148022		NM_014261	ENSG00000127666	TICAM1	IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF	TIR domain containing adaptor molecule 1	protein-coding
76097	chr15	72494471	72494700	+	0	NA	intron (NM_005744, intron 1 of 13)	L2b|LINE|L2	20255	NM_005744	25820		NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding
34351	chr10	132202021	132202280	+	0	NA	intron (NM_006426, intron 11 of 13)	intron (NM_006426, intron 11 of 13)	15202	NM_006426	10570		NM_006426	ENSG00000151640	DPYSL4	CRMP3|DRP-4|ULIP4	dihydropyrimidinase like 4	protein-coding
30685	chr10	80518771	80519500	+	0	NA	3' UTR (NM_001351267, exon 11 of 11)	3' UTR (NM_001351267, exon 11 of 11)	16807	NR_120661	101929574		NR_120661	ENSG00000226659	TSPAN14-AS1	-	TSPAN14 antisense RNA 1	ncRNA
66293	chr14	61393951	61394050	+	0	NA	intron (NM_006255, intron 2 of 13)	L1ME2|LINE|L1	72557	NM_006255	5583		NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta|uORF2	protein kinase C eta	protein-coding
158820	chr3	9746301	9746650	+	0	NA	intron (NR_160918, intron 14 of 14)	intron (NR_160918, intron 14 of 14)	-3469	NR_148930	4968		NM_002542	ENSG00000114026	OGG1	HMMH|HOGG1|MUTM|OGH1	8-oxoguanine DNA glycosylase	protein-coding
52616	chr12	56256671	56256900	+	0	NA	intron (NM_173595, intron 4 of 27)	intron (NM_173595, intron 4 of 27)	1599	NM_173595	283373		NM_173595	ENSG00000139645	ANKRD52	ANKRD33	ankyrin repeat domain 52	protein-coding
167898	chr3	136152371	136152530	+	0	NA	exon (NM_018133, exon 2 of 2)	exon (NM_018133, exon 2 of 2)	42018	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
44480	chr11	105042921	105043180	+	0	NA	intron (NM_001017534, intron 2 of 2)	L2|LINE|L2	2274	NM_052889	114769		NM_052889	ENSG00000204397	CARD16	COP|COP1|LLID-114769|PSEUDO-ICE	caspase recruitment domain family member 16	protein-coding
98787	chr17	48148521	48148780	+	0	NA	intron (NM_001075099, intron 11 of 12)	intron (NM_001075099, intron 11 of 12)	7861	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
17262	chr1	156384221	156384480	+	0	NA	non-coding (NR_146765, exon 10 of 11)	non-coding (NR_146765, exon 10 of 11)	15139	NR_146763	57127		NM_020407	ENSG00000132677	RHBG	SLC42A2	Rh family B glycoprotein	protein-coding
160084	chr3	18786521	18787480	+	0	NA	Intergenic	AluJr|SINE|Alu	-341408	NM_001322874	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
99830	chr17	55162501	55162700	+	0	NA	3' UTR (NM_178509, exon 18 of 18)	3' UTR (NM_178509, exon 18 of 18)	-102360	NM_002126	3131		NM_002126	ENSG00000108924	HLF	-	HLF transcription factor, PAR bZIP family member	protein-coding
16799	chr1	155553501	155553900	+	0	NA	intron (NM_018489, intron 1 of 27)	intron (NM_018489, intron 1 of 27)	-8342	NR_147964	645676		NR_027023	ENSG00000235919	ASH1L-AS1	APPLE	ASH1L antisense RNA 1	ncRNA
69574	chr14	97056151	97056250	+	0	NA	Intergenic	Intergenic	-98657	NR_146554	105370648		NR_146554	ENSG00000259110	LINC02304	-	long intergenic non-protein coding RNA 2304	ncRNA
190234	chr5	178330751	178331050	+	0	NA	intron (NM_173465, intron 2 of 28)	L2b|LINE|L2	-98078	NR_103509	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
160317	chr3	27533771	27534800	+	0	NA	Intergenic	Intergenic	-49901	NM_001321103	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
26222	chr10	14581101	14581300	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-8825	NM_001282700	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
136524	chr2	177256151	177256930	+	0	NA	promoter-TSS (NR_036075)	promoter-TSS (NR_036075)	-530	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA
114248	chr19	11530351	11531050	+	0	NA	Intergenic	Intergenic	-1566	NM_001142465	51295		NM_016581	ENSG00000130159	ECSIT	SITPEC	ECSIT signaling integrator	protein-coding
157027	chr22	42556651	42557230	+	0	NA	intron (NR_104300, intron 6 of 10)	intron (NR_104300, intron 6 of 10)	2984	NR_104300	253190		NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase like 2	protein-coding
193162	chr6	29680101	29680300	+	0	NA	intron (NM_001109809, intron 1 of 4)	intron (NM_001109809, intron 1 of 4)	952	NM_001366333	346171		NM_001109809	ENSG00000204644	ZFP57	C6orf40|TNDM1|ZNF698|bA145L22|bA145L22.2	ZFP57 zinc finger protein	protein-coding
35015	chr11	550021	550280	+	0	NA	exon (NM_198075, exon 8 of 14)	exon (NM_198075, exon 8 of 14)	-9112	NR_147607	692247		NR_147607	ENSG00000254815	LMNTD2-AS1	-	LMNTD2 antisense RNA 1	ncRNA
65377	chr14	50670571	50670730	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2344	NM_021818	60485		NM_021818	ENSG00000151748	SAV1	SAV|WW45|WWP4	salvador family WW domain containing protein 1	protein-coding
40553	chr11	64323101	64323900	+	0	NA	Intergenic	Intergenic	-4904	NM_001372071	51504		NM_016404	ENSG00000173113	TRMT112	HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112	tRNA methyltransferase activator subunit 11-2	protein-coding
78142	chr15	90398071	90398250	+	0	NA	intron (NM_003870, intron 2 of 37)	AluSq|SINE|Alu	9918	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
34896	chr11	382171	382530	+	0	NA	TTS (NM_178537)	TTS (NM_178537)	-10246	NM_001303029	11187		NM_007183	ENSG00000184363	PKP3	-	plakophilin 3	protein-coding
233339	chr9	137444221	137444600	+	0	NA	Intergenic	AluJb|SINE|Alu	-3053	NM_001033113	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
228539	chr9	101395351	101395650	+	0	NA	intron (NM_019051, intron 1 of 1)	L1MA4|LINE|L1	3118	NM_019051	54534		NM_019051	ENSG00000136897	MRPL50	MRP-L50|mL50	mitochondrial ribosomal protein L50	protein-coding
103337	chr17	77999821	78000330	+	0	NA	Intergenic	Intergenic	-4162	NM_001142640	57690		NM_018996	ENSG00000078687	TNRC6C	-	trinucleotide repeat containing adaptor 6C	protein-coding
170719	chr3	187999701	188001200	+	0	NA	Intergenic	Intergenic	-24043	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
19257	chr1	172696071	172696230	+	0	NA	Intergenic	L2b|LINE|L2	37047	NM_000639	356		NM_000639	ENSG00000117560	FASLG	ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A	Fas ligand	protein-coding
37570	chr11	19060571	19060930	+	0	NA	promoter-TSS (NM_001303615)	promoter-TSS (NM_001303615)	-33	NM_054030	117194		NM_054030	ENSG00000183695	MRGPRX2	MGRG3|MRGX2	MAS related GPR family member X2	protein-coding
50515	chr12	47826001	47826530	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-6362	NR_160435	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
174442	chr4	39701571	39702100	+	0	NA	intron (NM_001111113, intron 1 of 4)	AluSx1|SINE|Alu	3699	NM_005339	3093		NM_005339	ENSG00000078140	UBE2K	E2-25K|HIP2|HYPG|LIG|UBC1	ubiquitin conjugating enzyme E2 K	protein-coding
75386	chr15	65739871	65740030	+	0	NA	intron (NM_001376919, intron 5 of 31)	AluSx|SINE|Alu	-20618	NR_039736	100616379		NR_039736	ENSG00000264737	MIR4511	mir-4511	microRNA 4511	ncRNA
223628	chr8	144326001	144327800	+	0	NA	promoter-TSS (NM_012079)	promoter-TSS (NM_012079)	-48	NM_012079	8694		NM_012079	ENSG00000185000	DGAT1	ARAT|ARGP1|DGAT|DIAR7	diacylglycerol O-acyltransferase 1	protein-coding
31182	chr10	91193501	91193900	+	0	NA	intron (NM_001257101, intron 1 of 9)	L2a|LINE|L2	-26451	NM_001256549	84333		NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
15153	chr1	148946551	148947000	+	0	NA	intron (NM_001198834, intron 5 of 43)	intron (NM_001198834, intron 5 of 43)	-5349	NM_001002811	9659		NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
167866	chr3	134473901	134474630	+	0	NA	Intergenic	Intergenic	-11459	NM_001353109	80254		NM_025180	ENSG00000182923	CEP63	SCKL6	centrosomal protein 63	protein-coding
203080	chr6	166335801	166336000	+	0	NA	intron (NR_130113, intron 1 of 6)	intron (NR_130113, intron 1 of 6)	6645	NR_130113	113402		NM_145169	ENSG00000198818	SFT2D1	C6orf83|pRGR1	SFT2 domain containing 1	protein-coding
72819	chr15	40108171	40109830	+	0	NA	promoter-TSS (NM_001003943)	promoter-TSS (NM_001003943)	-121	NM_001003940	90427		NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
32586	chr10	103490321	103491730	+	0	NA	intron (NR_120675, intron 3 of 3)	intron (NR_120675, intron 3 of 3)	-2680	NM_004210	9148		NM_004210	ENSG00000107954	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding
236988	chrX	101596021	101596450	+	0	NA	Intergenic	Intergenic	21765	NR_033669	54470		NM_019007	ENSG00000198960	ARMCX6	GASP10	armadillo repeat containing X-linked 6	protein-coding
113581	chr19	10272521	10272850	+	0	NA	intron (NM_000201, intron 1 of 6)	AluSc8|SINE|Alu	1565	NM_000201	3383		NM_000201	ENSG00000090339	ICAM1	BB2|CD54|P3.58	intercellular adhesion molecule 1	protein-coding
23688	chr1	231460301	231461330	+	0	NA	Intergenic	Intergenic	15710	NR_033826	645339		NR_033826		SNRPD2P2	-	small nuclear ribonucleoprotein D2 pseudogene 2	pseudo
164819	chr3	70979821	70980080	+	0	NA	intron (NM_001244810, intron 14 of 20)	intron (NM_001244810, intron 14 of 20)	84974	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
97423	chr17	43483171	43484680	+	0	NA	promoter-TSS (NM_001322216)	promoter-TSS (NM_001322216)	-50	NM_004941	1659		NM_004941	ENSG00000067596	DHX8	DDX8|Dhr2|HRH1|PRP22|PRPF22	DEAH-box helicase 8	protein-coding
190380	chr5	179759951	179760680	+	0	NA	intron (NM_014757, intron 1 of 4)	intron (NM_014757, intron 1 of 4)	27493	NM_014757	9794		NM_014757	ENSG00000161021	MAML1	Mam-1|Mam1	mastermind like transcriptional coactivator 1	protein-coding
59550	chr13	27274901	27275100	+	0	NA	3' UTR (NM_001331126, exon 4 of 4)	3' UTR (NM_001331126, exon 4 of 4)	3823	NM_001331126	387496		NM_206827	ENSG00000122035	RASL11A	-	RAS like family 11 member A	protein-coding
28249	chr10	45591351	45591750	+	0	NA	intron (NM_145021, intron 1 of 6)	L1ME3E|LINE|L1	3356	NM_145021	220972		NM_145021	ENSG00000165406	MARCHF8	CMIR|MARCH-VIII|MARCH8|MIR|RNF178|c-MIR	membrane associated ring-CH-type finger 8	protein-coding
152129	chr22	19962021	19962700	+	0	NA	promoter-TSS (NM_007310)	promoter-TSS (NM_007310)	-193	NM_007310	1312		NM_000754	ENSG00000093010	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
212930	chr7	130924721	130925080	+	0	NA	Intergenic	Intergenic	11436	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
96226	chr17	39782371	39782730	+	0	NA	intron (NM_001284514, intron 6 of 8)	intron (NM_001284514, intron 6 of 8)	-4325	NM_001284516	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
139620	chr2	225055571	225056030	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-13332	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
76129	chr15	72531171	72531330	+	0	NA	intron (NM_005744, intron 2 of 13)	intron (NM_005744, intron 2 of 13)	-55967	NR_030359	693215		NR_030359	ENSG00000283798	MIR630	MIRN630|hsa-mir-630	microRNA 630	ncRNA
22647	chr1	223726051	223727600	+	0	NA	intron (NM_001748, intron 2 of 20)	intron (NM_001748, intron 2 of 20)	14286	NM_001748	824		NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding
12734	chr1	109551551	109552350	+	0	NA	intron (NM_006496, intron 1 of 8)	AluSx|SINE|Alu	3335	NM_006496	2773		NM_006496	ENSG00000065135	GNAI3	87U6|ARCND1|ARCODS|HG1A	G protein subunit alpha i3	protein-coding
227015	chr9	83817071	83818930	+	0	NA	promoter-TSS (NM_001135953)	promoter-TSS (NM_001135953)	-163	NM_001135953	80318		NM_025211	ENSG00000165113	GKAP1	FKSG21|GKAP42	G kinase anchoring protein 1	protein-coding
239126	chrY	11307351	11307650	+	0	NA	Intergenic	CpG	1114090	NR_033667	352887		NR_033667	ENSG00000291034	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
126268	chr2	27137451	27137750	+	0	NA	exon (NM_178553, exon 3 of 3)	exon (NM_178553, exon 3 of 3)	1810	NM_178553	339779		NM_178553	ENSG00000186143	PRR30	C2orf53	proline rich 30	protein-coding
97375	chr17	43320751	43321150	+	0	NA	Intergenic	AluSx4|SINE|Alu	-20719	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
153487	chr22	26427171	26427550	+	0	NA	Intergenic	Intergenic	-1900	NM_020437	57168		NM_020437	ENSG00000128203	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
106825	chr18	24002701	24003330	+	0	NA	intron (NR_110796, intron 3 of 5)	intron (NR_110796, intron 3 of 5)	10128	NM_153211	125488		NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
170687	chr3	187777221	187778000	+	0	NA	Intergenic	Intergenic	-32142	NM_001706	604		NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	BCL6 transcription repressor	protein-coding
203201	chr6	167734551	167735080	+	0	NA	Intergenic	Intergenic	-51028	NR_117092	441178		NM_001025489	ENSG00000203688	LINC02487	-	long intergenic non-protein coding RNA 2487	ncRNA
215649	chr8	357701	357980	+	0	NA	Intergenic	Intergenic	25334	NR_103537	157693		NR_103537	ENSG00000182366	FAM87A	-	family with sequence similarity 87 member A	ncRNA
207420	chr7	44466151	44466500	+	0	NA	intron (NM_015332, intron 2 of 5)	intron (NM_015332, intron 2 of 5)	24333	NM_015332	23386		NM_015332	ENSG00000015676	NUDCD3	NudCL	NudC domain containing 3	protein-coding
191098	chr6	3867921	3868180	+	0	NA	Intergenic	Intergenic	18677	NM_012135	26240		NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
183945	chr5	87917921	87918000	+	0	NA	Intergenic	AluSc|SINE|Alu	255918	NR_149089	111082994		NR_149089	ENSG00000249362	LINC02488	CTD-2316B1	long intergenic non-protein coding RNA 2488	ncRNA
65668	chr14	52531651	52532000	+	0	NA	intron (NM_020784, intron 6 of 20)	L1MC2|LINE|L1	20680	NM_020784	57544		NM_020784	ENSG00000087301	TXNDC16	ERp90|KIAA1344	thioredoxin domain containing 16	protein-coding
58502	chr12	132169251	132169550	+	0	NA	Intergenic	Intergenic	20295	NR_146452	100996246		NR_146452	ENSG00000256576	LINC02361	-	long intergenic non-protein coding RNA 2361	ncRNA
199431	chr6	117265351	117265780	+	0	NA	promoter-TSS (NM_182645)	promoter-TSS (NM_182645)	7	NM_182645	245806		NM_153453	ENSG00000170162	VGLL2	VGL2|VITO1	vestigial like family member 2	protein-coding
72949	chr15	40450021	40450650	+	0	NA	intron (NR_125372, intron 1 of 4)	MamSINE1|SINE|tRNA-RTE	9382	NR_125372	22893		NM_014952	ENSG00000140320	BAHD1	-	bromo adjacent homology domain containing 1	protein-coding
105743	chr18	2741771	2742130	+	0	NA	intron (NM_015295, intron 28 of 47)	L2|LINE|L2	86224	NM_015295	23347		NM_015295	ENSG00000101596	SMCHD1	BAMS|FSHD2	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding
170552	chr3	186785271	186786030	+	0	NA	promoter-TSS (NR_145766)	promoter-TSS (NR_145766)	-673	NR_145766	109617006		NR_145766	ENSG00000200418	SNORA63B	-	small nucleolar RNA, H/ACA box 63B	snoRNA
29394	chr10	70135671	70135830	+	0	NA	Intergenic	Intergenic	-2816	NM_001198696	84883		NM_032797	ENSG00000042286	AIFM2	AMID|FSP1|PRG3	apoptosis inducing factor mitochondria associated 2	protein-coding
178206	chr4	142553071	142553630	+	0	NA	intron (NM_003866, intron 2 of 26)	L2b|LINE|L2	7405	NM_001385338	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
92021	chr17	7470721	7471200	+	0	NA	intron (NM_020899, intron 1 of 3)	MER91A|DNA|hAT-Tip100	8671	NM_001128833	57659		NM_020899	ENSG00000174282	ZBTB4	KAISO-L1|ZNF903	zinc finger and BTB domain containing 4	protein-coding
192495	chr6	24968451	24969550	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-33040	NM_001286445	9750		NM_014722	ENSG00000111913	RIPOR2	C6orf32|DFNA21|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48	RHO family interacting cell polarization regulator 2	protein-coding
87169	chr16	69329051	69329150	+	0	NA	exon (NM_001379262, exon 6 of 6)	exon (NM_001379262, exon 6 of 6)	1488	NM_022341	64146		NM_022341	ENSG00000258429	PDF	-	peptide deformylase, mitochondrial	protein-coding
185474	chr5	131288271	131288630	+	0	NA	intron (NM_001038702, intron 1 of 4)	intron (NM_001038702, intron 1 of 4)	24397	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
116527	chr19	18188551	18188850	+	0	NA	Intergenic	AluYc3|SINE|Alu	-4518	NM_032683	84769		NM_032683	ENSG00000254858	MPV17L2	FKSG24	MPV17 mitochondrial inner membrane protein like 2	protein-coding
50412	chr12	47363651	47364350	+	0	NA	TTS (NR_039715)	TTS (NR_039715)	269	NR_039715	100616478		NR_039715	ENSG00000264906	MIR4494	-	microRNA 4494	ncRNA
233500	chr9	138222551	138222950	+	0	NA	intron (NR_146178, intron 4 of 14)	MER4A1_|LTR|ERV1	5894	NR_146178	100132403		NM_001145249		FAM157B	-	family with sequence similarity 157 member B	ncRNA
228300	chr9	98106921	98107180	+	0	NA	intron (NM_014788, intron 2 of 5)	L1MD2|LINE|L1	12172	NM_014788	9830		NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
129508	chr2	69638521	69638950	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	5003	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
203493	chr7	597321	597580	+	0	NA	intron (NM_001164759, intron 6 of 10)	intron (NM_001164759, intron 6 of 10)	-5395	NR_110054	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
198131	chr6	90426151	90426250	+	0	NA	Intergenic	Intergenic	113458	NR_039671	100616109		NR_039671	ENSG00000266760	MIR4464	mir-4464	microRNA 4464	ncRNA
73237	chr15	41689751	41690050	+	0	NA	intron (NM_001164273, intron 2 of 23)	L1MB8|LINE|L1	-1685	NR_030356	693211		NR_030356	ENSG00000207766	MIR626	MIRN626|hsa-mir-626	microRNA 626	ncRNA
124739	chr2	6876071	6876230	+	0	NA	Intergenic	MER101-int|LTR|ERV1	-1627	NM_080657	91543		NM_080657	ENSG00000134321	RSAD2	SAND|cig33|cig5|vig1	radical S-adenosyl methionine domain containing 2	protein-coding
177501	chr4	114659471	114659650	+	0	NA	intron (NM_001128174, intron 2 of 5)	intron (NM_001128174, intron 2 of 5)	2801	NR_030303	693162		NR_030303	ENSG00000207931	MIR577	MIRN577|hsa-mir-577|mir-577	microRNA 577	ncRNA
63033	chr13	112942521	112944430	+	0	NA	Intergenic	CpG	25163	NR_034002	100289410		NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
58198	chr12	126747501	126747750	+	0	NA	intron (NR_033878, intron 2 of 4)	intron (NR_033878, intron 2 of 4)	10618	NR_038256	100507206		NR_038256	ENSG00000189238	LINC00943	-	long intergenic non-protein coding RNA 943	ncRNA
156421	chr22	41204001	41204200	+	0	NA	Intergenic	Intergenic	-1212	NM_031488	83746		NM_031488	ENSG00000100395	L3MBTL2	H-l(3)mbt-l|L3MBT	L3MBTL histone methyl-lysine binding protein 2	protein-coding
234048	chrX	4263101	4263300	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-342458	NR_146578	729162		NR_146578		FAM239B	-	zinc finger protein 839 pseudogene	pseudo
162809	chr3	49122671	49123650	+	0	NA	exon (NM_002292, exon 26 of 32)	exon (NM_002292, exon 26 of 32)	-2222	NM_001351105	10869		NM_006677	ENSG00000172046	USP19	ZMYND9	ubiquitin specific peptidase 19	protein-coding
122367	chr19	49359271	49359430	+	0	NA	intron (NM_001256661, intron 3 of 12)	intron (NM_001256661, intron 3 of 12)	2167	NM_001256661	8463		NM_003598	ENSG00000074219	TEAD2	ETF|TEAD-2|TEF-4|TEF4	TEA domain transcription factor 2	protein-coding
66744	chr14	64510401	64510600	+	0	NA	intron (NM_001123329, intron 1 of 1)	intron (NM_001123329, intron 1 of 1)	-5287	NM_001304507	7597		NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding
123259	chr19	53365071	53366630	+	0	NA	non-coding (NR_145446, exon 1 of 5)	non-coding (NR_145446, exon 1 of 5)	145	NM_001348156	170958		NM_001348156	ENSG00000203326	ZNF525	-	zinc finger protein 525	protein-coding
105644	chr18	976321	976580	+	0	NA	Intergenic	L1PA3|LINE|L1	-48457	NR_146724	388456		NR_146724	ENSG00000259837	LINC01904	-	long intergenic non-protein coding RNA 1904	ncRNA
96018	chr17	39236921	39237550	+	0	NA	promoter-TSS (NR_164152)	promoter-TSS (NR_164152)	-535	NR_164152	101929578		NR_164152		LOC101929578	-	transcription factor CP2-like	pseudo
19319	chr1	173409701	173410530	+	0	NA	intron (NR_037845, intron 2 of 2)	AluJb|SINE|Alu	51247	NR_125960	101928673		NR_125960	ENSG00000203739	PRDX6-AS1	-	PRDX6 antisense RNA 1	ncRNA
58891	chr13	19439171	19439350	+	0	NA	promoter-TSS (NM_001271850)	promoter-TSS (NM_001271850)	-785	NM_001271850	93492		NM_130785	ENSG00000132958	TPTE2	TPIP	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2	protein-coding
238426	chrX	150736321	150736650	+	0	NA	TTS (NM_001306145)	TTS (NM_001306145)	24730	NM_001353996	8776		NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
1854	chr1	6357121	6357700	+	0	NA	intron (NM_007274, intron 1 of 8)	intron (NM_007274, intron 1 of 8)	1519	NM_181866	11332		NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding
58405	chr12	131907971	131909430	+	0	NA	exon (NM_003565, exon 6 of 28)	exon (NM_003565, exon 6 of 28)	14078	NM_003565	8408		NM_003565	ENSG00000177169	ULK1	ATG1|ATG1A|UNC51|Unc51.1|hATG1	unc-51 like autophagy activating kinase 1	protein-coding
86839	chr16	67919621	67919880	+	0	NA	intron (NM_006742, intron 2 of 2)	intron (NM_006742, intron 2 of 2)	12112	NM_001907	1506		NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding
146420	chr20	49568901	49569200	+	0	NA	promoter-TSS (NM_000961)	promoter-TSS (NM_000961)	-913	NM_000961	5740		NM_000961	ENSG00000124212	PTGIS	CYP8|CYP8A1|PGIS|PTGI	prostaglandin I2 synthase	protein-coding
226595	chr9	73152751	73153350	+	0	NA	intron (NM_000700, intron 1 of 12)	intron (NM_000700, intron 1 of 12)	1185	NM_000700	301		NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding
200915	chr6	139141701	139142130	+	0	NA	intron (NM_016217, intron 1 of 3)	AluSc|SINE|Alu	6835	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
83693	chr16	28425941	28426740	+	0	NA	5' UTR (NM_001199142, exon 1 of 22)	5' UTR (NM_001199142, exon 1 of 22)	114	NM_001199142	8663		NM_003752	ENSG00000184110	EIF3C	EIF3CL|EIF3S8|eIF3-p110	eukaryotic translation initiation factor 3 subunit C	protein-coding
54349	chr12	89694151	89694450	+	0	NA	intron (NM_001366520, intron 1 of 21)	intron (NM_001366520, intron 1 of 21)	14538	NM_001366521	490		NM_001682	ENSG00000070961	ATP2B1	MRD66|PMCA1|PMCA1kb	ATPase plasma membrane Ca2+ transporting 1	protein-coding
165407	chr3	97872151	97872700	+	0	NA	exon (NM_153605, exon 4 of 22)	exon (NM_153605, exon 4 of 22)	50414	NM_153605	131544		NM_153605	ENSG00000080200	CRYBG3	DKFZp667G2110|vlAKAP	crystallin beta-gamma domain containing 3	protein-coding
55376	chr12	104300551	104300850	+	0	NA	intron (NM_001261446, intron 2 of 13)	AluSp|SINE|Alu	-3039	NM_001008394	493861		NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding
114753	chr19	13298701	13298900	+	0	NA	exon (NM_001174080, exon 19 of 47)	exon (NM_001174080, exon 19 of 47)	148389	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
18713	chr1	167451871	167452030	+	0	NA	intron (NM_198053, intron 1 of 7)	AluSq2|SINE|Alu	66579	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
121200	chr19	46579401	46579830	+	0	NA	intron (NM_001370550, intron 1 of 2)	intron (NM_001370550, intron 1 of 2)	21301	NM_001370551	100506012		NM_001205281	ENSG00000291145	PPP5D1P	PPP5D1	PPP5 tetratricopeptide repeat domain containing 1, pseudogene	pseudo
191107	chr6	4017171	4017330	+	0	NA	Intergenic	Intergenic	-4050	NM_003913	8899		NM_003913	ENSG00000112739	PRP4K	PR4H|PRP4|PRP4H|PRPF4B|Prp4B|dJ1013A10.1	pre-mRNA processing factor kinase PRP4K	protein-coding
62617	chr13	100586401	100586600	+	0	NA	intron (NM_001195087, intron 1 of 2)	intron (NM_001195087, intron 1 of 2)	2292	NM_001195087	87769		NM_033110	ENSG00000134864	GGACT	A2LD1	gamma-glutamylamine cyclotransferase	protein-coding
5791	chr1	26543421	26543680	+	0	NA	intron (NM_001330441, intron 1 of 20)	intron (NM_001330441, intron 1 of 20)	438	NM_001330441	6195		NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding
167962	chr3	136674271	136674430	+	0	NA	intron (NM_005862, intron 1 of 33)	L1ME1|LINE|L1	78028	NM_005862	10274		NM_005862	ENSG00000118007	STAG1	MRD47|SA1|SCC3A	STAG1 cohesin complex component	protein-coding
104228	chr17	80669201	80669400	+	0	NA	intron (NM_020761, intron 3 of 33)	intron (NM_020761, intron 3 of 33)	124462	NM_020761	57521		NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding
160805	chr3	33002051	33002350	+	0	NA	intron (NM_000404, intron 15 of 15)	intron (NM_000404, intron 15 of 15)	50556	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
44281	chr11	102300851	102301630	+	0	NA	Intergenic	L1PA6|LINE|L1	-16244	NM_182962	330		NM_001165	ENSG00000023445	BIRC3	AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2	baculoviral IAP repeat containing 3	protein-coding
134582	chr2	144249271	144249500	+	0	NA	promoter-TSS (NR_148872)	promoter-TSS (NR_148872)	-686	NR_148872	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
57497	chr12	122093751	122094500	+	0	NA	intron (NM_014938, intron 1 of 16)	(GT)n|Simple_repeat|Simple_repeat	15369	NM_014938	22877		NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding
113233	chr19	8483101	8483480	+	0	NA	intron (NM_031203, intron 14 of 16)	MIR|SINE|MIR	19350	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
68219	chr14	76921471	76921630	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-38088	NR_133913	105370578		NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA
58356	chr12	131626421	131628480	+	0	NA	Intergenic	Intergenic	20671	NR_146868	105370085		NR_146868		LINC02414	-	long intergenic non-protein coding RNA 2414	ncRNA
11910	chr1	93351251	93351850	+	0	NA	intron (NM_001938, intron 1 of 2)	AluSz6|SINE|Alu	5643	NM_001938	1810		NM_001938	ENSG00000117505	DR1	NC2|NC2-BETA|NC2B|NCB2	down-regulator of transcription 1	protein-coding
202919	chr6	160103251	160103630	+	0	NA	intron (NM_000876, intron 46 of 47)	intron (NM_000876, intron 46 of 47)	10358	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
30184	chr10	74380821	74381080	+	0	NA	intron (NM_001369123, intron 4 of 9)	intron (NM_001369123, intron 4 of 9)	148374	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
132917	chr2	111420771	111420930	+	0	NA	intron (NR_136161, intron 1 of 5)	intron (NR_136161, intron 1 of 5)	74311	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
194336	chr6	32855771	32856350	+	0	NA	intron (NM_002800, intron 1 of 5)	MIR3|SINE|MIR	1868	NM_002800	5698		NM_002800	ENSG00000240065	PSMB9	LMP2|PRAAS3|PRAAS6|PSMB6i|RING12|beta1i	proteasome 20S subunit beta 9	protein-coding
124865	chr2	8284071	8284230	+	0	NA	intron (NR_152741, intron 8 of 9)	L2a|LINE|L2	44269	NR_152741	339789		NR_034135	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
237112	chrX	104270671	104271030	+	0	NA	Intergenic	Intergenic	-15917	NM_153448	80712		NM_153448	ENSG00000123576	ESX1	ESX1L|ESXR1	ESX homeobox 1	protein-coding
17802	chr1	159817551	159818050	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-9073	NM_001330741	56833		NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding
174705	chr4	42627861	42629130	+	0	NA	intron (NM_001105529, intron 1 of 35)	intron (NM_001105529, intron 1 of 35)	28610	NM_006095	10396		NM_006095	ENSG00000124406	ATP8A1	ATPASEII|ATPIA|ATPP2	ATPase phospholipid transporting 8A1	protein-coding
41043	chr11	65456921	65457180	+	0	NA	TTS (NR_160548)	TTS (NR_160548)	1764	NR_160547	101927789		NR_160547		FAUP4	PAARH	FAU pseudogene 4	pseudo
77610	chr15	85347971	85348480	+	0	NA	Intergenic	Intergenic	-32371	NR_106993	102465803		NR_106993	ENSG00000284160	MIR7706	hsa-mir-7706	microRNA 7706	ncRNA
98464	chr17	47101601	47101880	+	0	NA	Intergenic	AluSz|SINE|Alu	87555	NM_001114091	996		NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
127163	chr2	38076371	38077130	+	0	NA	promoter-TSS (NM_000104)	promoter-TSS (NM_000104)	-599	NM_000104	1545		NM_000104	ENSG00000138061	CYP1B1	ASGD6|CP1B|CYPIB1|GLC3A|P4501B1	cytochrome P450 family 1 subfamily B member 1	protein-coding
15335	chr1	149916801	149917050	+	0	NA	intron (NM_014849, intron 1 of 12)	intron (NM_014849, intron 1 of 12)	919	NM_001328674	9900		NM_014849	ENSG00000159164	SV2A	DEE113|SLC22B1|SV2	synaptic vesicle glycoprotein 2A	protein-coding
82894	chr16	21612971	21613130	+	0	NA	intron (NM_016025, intron 2 of 4).2	intron (NM_016025, intron 2 of 4).2	13473	NM_016025	51108		NM_016025	ENSG00000197006	METTL9	CGI-81|DREV|DREV1|PAP1|hMETTL9	methyltransferase 9, His-X-His N1(pi)-histidine	protein-coding
185102	chr5	119255921	119256230	+	0	NA	Intergenic	L1PBa1|LINE|L1	-12684	NM_001286815	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
90447	chr17	1369551	1370400	+	0	NA	intron (NR_024058, intron 1 of 6)	Tigger1|DNA|TcMar-Tigger	30247	NM_006761	7531		NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding
121081	chr19	45887971	45888130	+	0	NA	Intergenic	L2b|LINE|L2	-1909	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
114654	chr19	13043821	13045200	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	19731	NM_001365985	4784		NM_002501	ENSG00000008441	NFIX	CTF|MALNS|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
124601	chr2	909671	910300	+	0	NA	Intergenic	Intergenic	-4534	NR_110179	101060385		NR_110179		LINC01939	-	long intergenic non-protein coding RNA 1939	ncRNA
26174	chr10	14523471	14523900	+	0	NA	intron (NM_001282695, intron 4 of 5)	intron (NM_001282695, intron 4 of 5)	9029	NM_001320741	83641		NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
141879	chr20	757121	757580	+	0	NA	Intergenic	Intergenic	11150	NM_033409	113278		NM_033409	ENSG00000101276	SLC52A3	BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2	solute carrier family 52 member 3	protein-coding
71167	chr14	105035351	105035450	+	0	NA	Intergenic	LTR57-int|LTR|ERVL	-14317	NM_145701	55038		NM_017955	ENSG00000170779	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
25597	chr10	8053251	8054000	+	0	NA	promoter-TSS (NR_024256)	promoter-TSS (NR_024256)	-141	NR_024256	399717		NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA
33757	chr10	122491201	122491900	+	0	NA	intron (NM_002775, intron 3 of 8)	intron (NM_002775, intron 3 of 8)	29997	NM_002775	5654		NM_002775	ENSG00000166033	HTRA1	ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11	HtrA serine peptidase 1	protein-coding
168100	chr3	138434371	138435100	+	0	NA	non-coding (NR_136409, exon 1 of 23)	non-coding (NR_136409, exon 1 of 23)	119	NM_001322834	83850		NM_031913	ENSG00000158220	ESYT3	CHR3SYT|E-Syt3|FAM62C	extended synaptotagmin 3	protein-coding
160661	chr3	31815771	31816530	+	0	NA	intron (NM_001174060, intron 3 of 10)	intron (NM_001174060, intron 3 of 10)	111937	NR_049771	100874206		NR_049771	ENSG00000232490	OSBPL10-AS1	-	OSBPL10 antisense RNA 1	ncRNA
190499	chr5	180367271	180368400	+	0	NA	Intergenic	Intergenic	-14499	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
42862	chr11	73287871	73288230	+	0	NA	intron (NM_001277207, intron 2 of 2)	intron (NM_001277207, intron 2 of 2)	15712	NM_001277204	5031		NM_004154	ENSG00000171631	P2RY6	P2Y6	pyrimidinergic receptor P2Y6	protein-coding
101557	chr17	68023551	68023800	+	0	NA	Intergenic	AluSx4|SINE|Alu	-12060	NM_002266	3838		NM_002266	ENSG00000182481	KPNA2	IPOA1|PTAC58|QIP2|RCH1|SRP1-alpha|SRP1alpha	karyopherin subunit alpha 2	protein-coding
231559	chr9	131488201	131488400	+	0	NA	intron (NM_013318, intron 28 of 31)	AluSz|SINE|Alu	-2186	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
84584	chr16	30647901	30648380	+	0	NA	Intergenic	Intergenic	-2638	NM_001320464	78994		NM_024031	ENSG00000156858	PRR14	-	proline rich 14	protein-coding
217440	chr8	28594001	28594600	+	0	NA	Intergenic	Intergenic	-89118	NR_036250	100422903		NR_036250	ENSG00000265251	MIR4288	-	microRNA 4288	ncRNA
116370	chr19	17929251	17929980	+	0	NA	Intergenic	AluSx|SINE|Alu	-3400	NM_001136203	115098		NM_138442	ENSG00000007080	CCDC124	Lso2|oxs1	coiled-coil domain containing 124	protein-coding
124951	chr2	8658351	8658650	+	0	NA	Intergenic	Intergenic	23361	NR_110153	100506299		NR_110153		ID2-AS1	-	ID2 antisense RNA 1	ncRNA
102012	chr17	74786251	74786780	+	0	NA	intron (NM_017728, intron 3 of 9)	L2a|LINE|L2	10016	NM_017728	54868		NM_017728	ENSG00000109066	TMEM104	SLC38A12	transmembrane protein 104	protein-coding
116845	chr19	18599071	18599230	+	0	NA	intron (NM_004750, intron 2 of 8)	AluSx1|SINE|Alu	7649	NM_004750	9244		NM_004750	ENSG00000006016	CRLF1	CISS|CISS1|CLF|CLF-1|NR6|zcytor5	cytokine receptor like factor 1	protein-coding
128011	chr2	47071151	47072080	+	0	NA	intron (NM_020458, intron 19 of 19)	MIRb|SINE|MIR	83693	NM_001163561	285051		NM_173649	ENSG00000239605	STPG4	C2orf61|GSE	sperm-tail PG-rich repeat containing 4	protein-coding
114904	chr19	13930421	13930730	+	0	NA	TTS (NM_001146255)	TTS (NM_001146255)	7842	NM_001370095	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
135627	chr2	168196851	168197150	+	0	NA	intron (NM_013233, intron 1 of 17)	L2a|LINE|L2	50595	NM_013233	27347		NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding
205629	chr7	22549701	22550300	+	0	NA	Intergenic	Intergenic	-13337	NR_038393	100506178		NR_038393	ENSG00000232759	STEAP1B-AS1	-	STEAP1B antisense RNA 1	ncRNA
45736	chr11	119115121	119116680	+	0	NA	intron (NM_001382611, intron 12 of 12)	intron (NM_001382611, intron 12 of 12)	-5623	NM_001243259	25988		NM_015517	ENSG00000172273	HINFP	HiNF-P|MIZF|ZNF743	histone H4 transcription factor	protein-coding
167616	chr3	129579451	129579830	+	0	NA	intron (NM_015103, intron 8 of 35)	intron (NM_015103, intron 8 of 35)	27036	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
62952	chr13	112277851	112278980	+	0	NA	Intergenic	Intergenic	-5415	NR_120422	101928730		NR_120422		LOC101928730	-	uncharacterized LOC101928730	ncRNA
172639	chr4	2541051	2541230	+	0	NA	intron (NM_001366318, intron 1 of 20)	AluSp|SINE|Alu	4493	NM_001366318	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
218128	chr8	41577451	41579230	+	0	NA	promoter-TSS (NM_001363197)	promoter-TSS (NM_001363197)	28	NR_125824	102723729		NR_125824		GPAT4-AS1	-	GPAT4 and GINS4 antisense RNA 1	ncRNA
194491	chr6	33255471	33255830	+	0	NA	TTS (NR_044997)	TTS (NR_044997)	6114	NR_044997	414765		NR_044997	ENSG00000232940	HCG25	dJ1033B10.16	HLA complex group 25	ncRNA
69735	chr14	98664921	98665180	+	0	NA	Intergenic	Intergenic	-46563	NR_161367	283598		NM_182560	ENSG00000176605	LINC02914	C14orf177	long intergenic non-protein coding RNA 2914	ncRNA
32561	chr10	103367201	103368100	+	0	NA	promoter-TSS (NM_006951)	promoter-TSS (NM_006951)	-326	NM_139052	6877		NM_006951	ENSG00000148835	TAF5	TAF(II)100|TAF2D|TAFII-100|TAFII100	TATA-box binding protein associated factor 5	protein-coding
88300	chr16	84114071	84115150	+	0	NA	intron (NM_003791, intron 1 of 22)	AluSx1|SINE|Alu	2332	NM_003791	8720		NM_003791	ENSG00000140943	MBTPS1	PCSK8|S1P|SEDKF|SKI-1	membrane bound transcription factor peptidase, site 1	protein-coding
164669	chr3	67000171	67000600	+	0	NA	intron (NM_032505, intron 2 of 3)	intron (NM_032505, intron 2 of 3)	2078	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
227334	chr9	89453451	89454050	+	0	NA	intron (NM_001371200, intron 2 of 20)	intron (NM_001371200, intron 2 of 20)	26140	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
217054	chr8	23362971	23363130	+	0	NA	intron (NM_002318, intron 2 of 13)	MIRb|SINE|MIR	26842	NR_038323	100507156		NR_038323	ENSG00000253837	LOXL2-AS1	-	LOXL2 antisense RNA 1	ncRNA
52536	chr12	56121801	56122000	+	0	NA	3' UTR (NM_001303125, exon 3 of 3)	3' UTR (NM_001303125, exon 3 of 3)	3483	NM_001303125	84872		NM_032786	ENSG00000135482	ZC3H10	ZC3HDC10	zinc finger CCCH-type containing 10	protein-coding
227001	chr9	83677801	83678200	+	0	NA	intron (NM_053067, intron 5 of 9)	intron (NM_053067, intron 5 of 9)	-29835	NR_135839	105376114		NR_135839	ENSG00000254473	UBQLN1-AS1	-	UBQLN1 antisense RNA 1	ncRNA
120959	chr19	45702151	45702650	+	0	NA	intron (NM_017659, intron 6 of 6)	AluJb|SINE|Alu	9734	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
71369	chr14	105494021	105495000	+	0	NA	intron (NM_001134875, intron 5 of 7)	intron (NM_001134875, intron 5 of 7)	3261	NM_001134876	283643		NM_173608	ENSG00000185347	TEDC1	C14orf80	tubulin epsilon and delta complex 1	protein-coding
75361	chr15	65585121	65585380	+	0	NA	intron (NM_001207059, intron 8 of 10)	MER3|DNA|hAT-Charlie	25881	NM_001207058	81556		NM_030800	ENSG00000138614	INTS14	C15orf44|VWA9	integrator complex subunit 14	protein-coding
143899	chr20	32580201	32580400	+	0	NA	intron (NM_001256798, intron 1 of 10)	MIR|SINE|MIR	5033	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
51132	chr12	50110701	50110930	+	0	NA	3' UTR (NM_001257199, exon 8 of 8)	3' UTR (NM_001257199, exon 8 of 8)	-1421	NM_001257133	84987		NM_032901	ENSG00000178449	COX14	C12orf62|MC4DN10|PCAG1	cytochrome c oxidase assembly factor COX14	protein-coding
24116	chr1	235648671	235649600	+	0	NA	intron (NM_001098721, intron 1 of 3)	CpG	649	NM_001098722	2786		NM_004485	ENSG00000168243	GNG4	HG3C	G protein subunit gamma 4	protein-coding
203215	chr6	168035371	168035530	+	0	NA	intron (NM_030615, intron 4 of 8)	CpG	17577	NM_005355	3834		NM_005355	ENSG00000125337	KIF25	KNSL3	kinesin family member 25	protein-coding
221830	chr8	128078101	128078500	+	0	NA	intron (NR_003367, intron 6 of 8)	intron (NR_003367, intron 6 of 8)	29148	NR_031612	100302175		NR_031612	ENSG00000221176	MIR1207	MIRN1207|hsa-mir-1207	microRNA 1207	ncRNA
93907	chr17	21273301	21273700	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-11211	NM_145109	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
181729	chr5	50687671	50688280	+	0	NA	intron (NM_024615, intron 2 of 25)	AluJo|SINE|Alu	20561	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
77041	chr15	78763701	78763900	+	0	NA	exon (NM_014272, exon 22 of 24)	exon (NM_014272, exon 22 of 24)	11763	NR_036495	646938		NR_036495	ENSG00000290424	LOC646938	-	TBC1 domain family member 2B pseudogene	pseudo
136275	chr2	174693771	174693930	+	0	NA	Intergenic	Intergenic	-10937	NM_001375835	7456		NM_003387	ENSG00000115935	WIPF1	PRPL-2|WAS2|WASPIP|WIP	WAS/WASL interacting protein family member 1	protein-coding
137960	chr2	201157971	201158730	+	0	NA	promoter-TSS (NR_040030)	promoter-TSS (NR_040030)	-558	NR_040030	65072		NR_040030	ENSG00000226312	CFLAR-AS1	ALS2CR10	CFLAR antisense RNA 1	ncRNA
175940	chr4	80462621	80463450	+	0	NA	intron (NM_001206997, intron 2 of 6)	L1M6|LINE|L1	127305	NM_152770	255119		NM_152770	ENSG00000197826	CFAP299	C4orf22	cilia and flagella associated protein 299	protein-coding
164580	chr3	64533671	64533930	+	0	NA	intron (NM_182920, intron 37 of 39)	intron (NM_182920, intron 37 of 39)	-27546	NR_110150	101929335		NR_110150	ENSG00000241158	ADAMTS9-AS1	-	ADAMTS9 antisense RNA 1	ncRNA
194760	chr6	34044701	34045430	+	0	NA	intron (NM_001256811, intron 5 of 9)	intron (NM_001256811, intron 5 of 9)	-45014	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275|mir-1275	microRNA 1275	ncRNA
89352	chr16	88764871	88765280	+	0	NA	intron (NM_001142864, intron 1 of 50)	intron (NM_001142864, intron 1 of 50)	20145	NM_001142864	9780		NM_001142864	ENSG00000103335	PIEZO1	DHS|ER|FAM38A|LMPH3|LMPHM6|Mib	piezo type mechanosensitive ion channel component 1 (Er blood group)	protein-coding
56240	chr12	111944871	111945850	+	0	NA	intron (NM_138341, intron 3 of 9)	AluSx4|SINE|Alu	67805	NM_001193531	89894		NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding
6076	chr1	27154811	27156100	+	0	NA	promoter-TSS (NM_003047)	promoter-TSS (NM_003047)	-330	NM_003047	6548		NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding
97929	chr17	45156121	45156480	+	0	NA	Intergenic	Intergenic	-3874	NM_001303437	124790		NM_144608	ENSG00000168517	HEXIM2	L3	HEXIM P-TEFb complex subunit 2	protein-coding
213803	chr7	140927301	140927500	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-2471	NM_001354609	673		NM_004333	ENSG00000157764	BRAF	B-RAF1|B-raf|BRAF-1|BRAF1|NS7|RAFB1	B-Raf proto-oncogene, serine/threonine kinase	protein-coding
120609	chr19	45029071	45029530	+	0	NA	intron (NM_006509, intron 7 of 10)	intron (NM_006509, intron 7 of 10)	-9745	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
33277	chr10	114538071	114539130	+	0	NA	intron (NM_001322883, intron 6 of 20)	intron (NM_001322883, intron 6 of 20)	-11687	NM_001322894	3983		NM_002313	ENSG00000099204	ABLIM1	ABLIM|LIMAB1|LIMATIN|abLIM-1	actin binding LIM protein 1	protein-coding
176095	chr4	82967801	82968000	+	0	NA	intron (NM_001288996, intron 2 of 10)	LTR78B|LTR|ERV1	42923	NM_194282	132660		NM_194282	ENSG00000189308	LIN54	CXCDC1|JC8.6|MIP120|TCX1	lin-54 DREAM MuvB core complex component	protein-coding
192213	chr6	18152621	18153350	+	0	NA	intron (NM_001346817, intron 1 of 9)	MER72|LTR|ERV1	2092	NM_000367	7172		NM_000367	ENSG00000137364	TPMT	TPMTD	thiopurine S-methyltransferase	protein-coding
220052	chr8	93739921	93741450	+	0	NA	promoter-TSS (NM_001377964)	promoter-TSS (NM_001377964)	85	NM_001377964	389677		NM_203390	ENSG00000183808	RBM12B	MGC:33837	RNA binding motif protein 12B	protein-coding
158456	chr22	50630251	50630550	+	0	NA	Intergenic	MER66B|LTR|ERV1	-2248	NM_001085427	410		NM_000487	ENSG00000100299	ARSA	ASA|MLD	arylsulfatase A	protein-coding
227280	chr9	89383401	89384300	+	0	NA	intron (NM_001371200, intron 15 of 20)	intron (NM_001371200, intron 15 of 20)	64999	NM_001282690	79048		NM_024077	ENSG00000187742	SECISBP2	SBP2|THMA1	SECIS binding protein 2	protein-coding
192982	chr6	28078201	28078730	+	0	NA	Intergenic	LTR42|LTR|ERVL	-1817	NM_001376494	7718		NM_003447	ENSG00000197279	ZNF165	CT53|LD65|ZSCAN7	zinc finger protein 165	protein-coding
175696	chr4	77071121	77071580	+	0	NA	intron (NM_006835, intron 1 of 6)	L1M4|LINE|L1	3560	NM_001348133	10983		NM_006835	ENSG00000118816	CCNI	CCNI1|CYC1|CYI	cyclin I	protein-coding
92391	chr17	8290471	8290850	+	0	NA	TTS (NM_001330127)	TTS (NM_001330127)	1990	NM_001330127	29098		NM_016492	ENSG00000108961	RANGRF	HSPC165|HSPC236|MOG1|RANGNRF	RAN guanine nucleotide release factor	protein-coding
146602	chr20	50133371	50133530	+	0	NA	intron (NM_199129, intron 2 of 5)	intron (NM_199129, intron 2 of 5)	-17493	NM_022442	7335		NM_021988	ENSG00000244687	UBE2V1	CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A	ubiquitin conjugating enzyme E2 V1	protein-coding
210332	chr7	99498571	99498800	+	0	NA	intron (NM_001345967, intron 1 of 1)	intron (NM_001345967, intron 1 of 1)	1596	NM_001345967	84124		NM_032164	ENSG00000160908	ZNF394	ZKSCAN14|ZSCAN46	zinc finger protein 394	protein-coding
138102	chr2	202271301	202271500	+	0	NA	intron (NM_015934, intron 1 of 14)	AluSx|SINE|Alu	-5031	NR_003058	692110		NR_003058	ENSG00000212534	SNORD70	HBII-234|SNORD70A	small nucleolar RNA, C/D box 70	snoRNA
29024	chr10	63707371	63707530	+	0	NA	Intergenic	Intergenic	-185560	NM_001318154	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
40314	chr11	63891871	63892230	+	0	NA	intron (NM_017490, intron 1 of 17)	intron (NM_017490, intron 1 of 17)	3513	NM_017490	2011		NM_004954	ENSG00000072518	MARK2	EMK-1|EMK1|PAR-1|Par-1b|Par1b	microtubule affinity regulating kinase 2	protein-coding
32292	chr10	102132221	102134180	+	0	NA	exon (NM_001288727, exon 1 of 12)	exon (NM_001288727, exon 1 of 12)	160	NM_015062	23082		NM_015062	ENSG00000148840	PPRC1	PRC	PPARG related coactivator 1	protein-coding
177386	chr4	112171321	112171580	+	0	NA	intron (NM_152400, intron 1 of 1)	intron (NM_152400, intron 1 of 1)	25996	NM_152400	132720		NM_152400	ENSG00000174749	FAM241A	C4orf32	family with sequence similarity 241 member A	protein-coding
94112	chr17	28039171	28040280	+	0	NA	Intergenic	AluJb|SINE|Alu	-2952	NM_016231	51701		NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding
194517	chr6	33296351	33296680	+	0	NA	intron (NM_004761, intron 4 of 17)	intron (NM_004761, intron 4 of 17)	2427	NM_004761	5863		NM_004761	ENSG00000237441	RGL2	HKE1.5|KE1.5|RAB2L	ral guanine nucleotide dissociation stimulator like 2	protein-coding
16547	chr1	154959921	154960180	+	0	NA	intron (NM_138300, intron 2 of 2)	AluY|SINE|Alu	-1421	NM_001321726	101928120		NM_001321726		PYGO2-AS1	-	PYGO2 and SHC1 antisense RNA 1	ncRNA
236451	chrX	71555071	71555450	+	0	NA	exon (NM_181673, exon 7 of 22)	exon (NM_181673, exon 7 of 22)	22156	NM_181672	8473		NM_003605	ENSG00000147162	OGT	HINCUT-1|HRNT1|MRX106|O-GLCNAC|OGT1|XLID106	O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
117257	chr19	19449221	19449730	+	0	NA	intron (NM_001384516, intron 2 of 12)	FLAM_C|SINE|Alu	14412	NR_030370	693225		NR_030370	ENSG00000207821	MIR640	MIRN640|hsa-mir-640	microRNA 640	ncRNA
10676	chr1	71068371	71068530	+	0	NA	promoter-TSS (NR_029707)	promoter-TSS (NR_029707)	-734	NR_029707	406962		NR_029707	ENSG00000207721	MIR186	MIRN186|miR-186	microRNA 186	ncRNA
188627	chr5	157211971	157212130	+	0	NA	intron (NM_005546, intron 3 of 16)	MIR|SINE|MIR	31210	NM_005546	3702		NM_005546	ENSG00000113263	ITK	EMT|LPFS1|LYK|PSCTK2	IL2 inducible T cell kinase	protein-coding
146952	chr20	52305851	52306430	+	0	NA	Intergenic	Intergenic	-114155	NM_199427	55734		NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding
59089	chr13	21073971	21074330	+	0	NA	Intergenic	AluJb|SINE|Alu	-12564	NM_014572	26524		NM_014572	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding
54147	chr12	76552271	76552930	+	0	NA	intron (NM_001319652, intron 1 of 25)	intron (NM_001319652, intron 1 of 25)	7171	NM_020841	114882		NM_020841	ENSG00000091039	OSBPL8	MST120|MSTP120|ORP8|OSBP10	oxysterol binding protein like 8	protein-coding
108862	chr18	79377201	79377900	+	0	NA	non-coding (NR_148360, exon 32 of 32)	non-coding (NR_148360, exon 32 of 32)	-18380	NM_006162	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
122861	chr19	50486201	50486400	+	0	NA	3' UTR (NM_175063, exon 8 of 8)	3' UTR (NM_175063, exon 8 of 8)	-9452	NM_001308429	112703		NM_138411	ENSG00000142530	GARIN5A	FAM71E1|GARIL5	golgi associated RAB2 interactor 5A	protein-coding
148758	chr21	8106321	8106580	+	0	NA	Intergenic	Intergenic	-91170	NR_038958	100507412		NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA
19117	chr1	171502921	171503180	+	0	NA	intron (NM_015172, intron 1 of 33)	intron (NM_015172, intron 1 of 33)	17520	NM_015172	23215		NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding
175668	chr4	76960001	76960600	+	0	NA	intron (NM_018243, intron 1 of 9)	intron (NM_018243, intron 1 of 9)	10548	NM_001306147	55752		NM_018243	ENSG00000138758	SEPTIN11	SEPT11|Septin-11	septin 11	protein-coding
137648	chr2	197422521	197422780	+	0	NA	intron (NM_001005526, intron 2 of 4)	AluY|SINE|Alu	12378	NM_012433	23451		NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding
141846	chr20	538051	538350	+	0	NA	intron (NM_177559, intron 1 of 13)	AluSz|SINE|Alu	5590	NM_001895	1457		NM_001895	ENSG00000101266	CSNK2A1	CK2A1|CKII|Cka1|Cka2|OCNDS	casein kinase 2 alpha 1	protein-coding
172701	chr4	2785351	2785830	+	0	NA	Intergenic	MER57C1|LTR|ERV1	-7495	NM_001122681	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
209448	chr7	76437571	76438250	+	0	NA	intron (NM_007155, intron 6 of 8)	intron (NM_007155, intron 6 of 8)	12960	NM_001110354	7784		NM_007155	ENSG00000188372	ZP3	OOMD3|OZEMA3|ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding
12575	chr1	108749851	108750300	+	0	NA	intron (NM_007269, intron 1 of 18)	intron (NM_007269, intron 1 of 18)	3401	NM_007269	6814		NM_007269	ENSG00000116266	STXBP3	MUNC18-3|MUNC18C|PSP|UNC-18C	syntaxin binding protein 3	protein-coding
87678	chr16	74606201	74607950	+	0	NA	promoter-TSS (NR_027265)	promoter-TSS (NR_027265)	39	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
92856	chr17	16313051	16313350	+	0	NA	intron (NM_004278, intron 3 of 6)	intron (NM_004278, intron 3 of 6)	31186	NR_031698	100302124		NR_031698	ENSG00000221355	MIR1288	MIRN1288|hsa-mir-1288	microRNA 1288	ncRNA
93336	chr17	18210771	18211450	+	0	NA	Intergenic	MIRc|SINE|MIR	-14525	NM_004140	3996		NM_004140	ENSG00000131899	LLGL1	DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1	LLGL scribble cell polarity complex component 1	protein-coding
120731	chr19	45354401	45354830	+	0	NA	intron (NM_000400, intron 17 of 22)	intron (NM_000400, intron 17 of 22)	13865	NM_177417	147700		NM_145275	ENSG00000104892	KLC3	KLC2|KLC2L|KLCt|KNS2B	kinesin light chain 3	protein-coding
61711	chr13	74094171	74094780	+	0	NA	intron (NM_007249, intron 1 of 7)	L2b|LINE|L2	39454	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
65719	chr14	52949471	52949900	+	0	NA	intron (NM_001134999, intron 2 of 15)	intron (NM_001134999, intron 2 of 15)	1365	NM_006832	10979		NM_006832	ENSG00000073712	FERMT2	KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2	FERM domain containing kindlin 2	protein-coding
201473	chr6	148760001	148761900	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	13920	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
138474	chr2	206783771	206784030	+	0	NA	promoter-TSS (NR_036077)	promoter-TSS (NR_036077)	-592	NR_036077	100422993		NR_036077	ENSG00000283469	MIR3130-1	MIR3130-3|mir-3130-1	microRNA 3130-1	ncRNA
119177	chr19	39420351	39420600	+	0	NA	intron (NM_022835, intron 11 of 18)	AluJr|SINE|Alu	6696	NM_001351694	64857		NM_022835	ENSG00000090924	PLEKHG2	ARHGEF42|CLG|CTB-60E11.4|LDAMD	pleckstrin homology and RhoGEF domain containing G2	protein-coding
53262	chr12	63152151	63152250	+	0	NA	promoter-TSS (NM_000706)	promoter-TSS (NM_000706)	-999	NM_000706	552		NM_000706	ENSG00000166148	AVPR1A	AVPR V1a|AVPR1|V1aR	arginine vasopressin receptor 1A	protein-coding
103385	chr17	78145171	78146780	+	0	NA	promoter-TSS (NM_001163075)	promoter-TSS (NM_001163075)	-410	NM_001163075	100141515		NM_001163075	ENSG00000187997	C17orf99	IL-40|UNQ464	chromosome 17 open reading frame 99	protein-coding
15213	chr1	149392621	149393300	+	0	NA	intron (NM_001364013, intron 1 of 4)	AluYa5|SINE|Alu	2322	NM_001364013	100996717		NM_001364012	ENSG00000286219	NOTCH2NLC	ETM6|N2N|NIID|NOTCH2NL|NOTCH2NLA|OPDM3	notch 2 N-terminal like C	protein-coding
170635	chr3	187032051	187032600	+	0	NA	intron (NM_003032, intron 1 of 6)	intron (NM_003032, intron 1 of 6)	-6393	NM_001353916	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
50635	chr12	48712301	48713200	+	0	NA	intron (NM_001240, intron 2 of 8)	AluSq2|SINE|Alu	3957	NM_001240	904		NM_001240	ENSG00000129315	CCNT1	CCNT|CYCT1|HIVE1	cyclin T1	protein-coding
36459	chr11	5703901	5704350	+	0	NA	intron (NM_006074, intron 4 of 7)	L1PA16|LINE|L1	14335	NM_001199573	10346		NM_006074	ENSG00000132274	TRIM22	GPSTAF50|RNF94|STAF50	tripartite motif containing 22	protein-coding
48236	chr12	8239071	8240100	+	0	NA	TTS (NR_120455)	TTS (NR_120455)	3361	NR_024254	653113		NR_024254		FAM86FP	-	family with sequence similarity 86, member A pseudogene	pseudo
151529	chr21	46462871	46463230	+	0	NA	intron (NR_046400, intron 2 of 3)	intron (NR_046400, intron 2 of 3)	579	NR_046400	100862692		NR_046400	ENSG00000223692	DIP2A-IT1	-	DIP2A intronic transcript 1	ncRNA
87367	chr16	70418201	70419330	+	0	NA	intron (NM_006927, intron 1 of 6)	intron (NM_006927, intron 1 of 6)	20335	NM_006927	6483		NM_006927	ENSG00000157350	ST3GAL2	Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding
127310	chr2	38763851	38763950	+	0	NA	Intergenic	Intergenic	-12406	NM_001195446	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
122955	chr19	50728001	50728800	+	0	NA	Intergenic	CpG	5036	NM_002975	6320		NM_002975	ENSG00000105472	CLEC11A	CLECSF3|LSLCL|P47|SCGF	C-type lectin domain containing 11A	protein-coding
128884	chr2	64114121	64115100	+	0	NA	intron (NM_020651, intron 1 of 6)	intron (NM_020651, intron 1 of 6)	29810	NM_020651	57162		NM_020651	ENSG00000197329	PELI1	-	pellino E3 ubiquitin protein ligase 1	protein-coding
79960	chr16	1775221	1775480	+	0	NA	exon (NM_001257370, exon 5 of 8)	exon (NM_001257370, exon 5 of 8)	2122	NM_001257370	197342		NM_001010865	ENSG00000197774	EME2	SLX2B|gs125	essential meiotic structure-specific endonuclease subunit 2	protein-coding
167134	chr3	127697301	127697950	+	0	NA	intron (NM_001256585, intron 5 of 6)	MLT1J|LTR|ERVL-MaLR	24673	NM_172027	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
60420	chr13	40981301	40981900	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	682	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
110933	chr19	2817121	2818780	+	0	NA	Intergenic	LTR10A|LTR|ERV1	-1918	NM_001102651	115196		NM_152303	ENSG00000172006	ZNF554	-	zinc finger protein 554	protein-coding
207856	chr7	50356621	50357350	+	0	NA	intron (NM_001291840, intron 2 of 2)	intron (NM_001291840, intron 2 of 2)	37937	NM_001291842	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
23332	chr1	228102901	228104180	+	0	NA	promoter-TSS (NR_130975)	promoter-TSS (NR_130975)	-215	NM_024319	79169		NM_024319	ENSG00000143793	C1orf35	MMTAG2	chromosome 1 open reading frame 35	protein-coding
22852	chr1	225465851	225465950	+	0	NA	Intergenic	Intergenic	-37045	NM_194442	3930		NM_002296	ENSG00000143815	LBR	C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18	lamin B receptor	protein-coding
643	chr1	1345951	1346480	+	0	NA	intron (NM_004421, intron 1 of 14)	intron (NM_004421, intron 1 of 14)	3203	NM_004421	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
44806	chr11	113857471	113857630	+	0	NA	intron (NM_020886, intron 1 of 24)	Kanga1c|DNA|TcMar-Tc2	18022	NM_001346260	57646		NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding
74507	chr15	60362551	60363250	+	0	NA	intron (NM_001002857, intron 5 of 13)	AluSz6|SINE|Alu	35086	NM_001002858	302		NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
53591	chr12	67991071	67991700	+	0	NA	intron (NR_104124, intron 1 of 4)	intron (NR_104124, intron 1 of 4)	1940	NR_104125	100885789		NR_104124		IFNG-AS1	GS1-410F4.2|NEST|Tmevpg1	IFNG antisense RNA 1	ncRNA
85047	chr16	31880051	31881100	+	0	NA	intron (NM_001265588, intron 2 of 4)	intron (NM_001265588, intron 2 of 4)	6768	NR_049749	10308		NM_003414	ENSG00000185947	ZNF267	HZF2	zinc finger protein 267	protein-coding
1384	chr1	2534971	2536130	+	0	NA	Intergenic	CpG	-5287	NM_001010926	388585		NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding
122605	chr19	49792051	49792350	+	0	NA	TTS (NR_106857)	TTS (NR_106857)	334	NR_106857	102465479		NR_106857	ENSG00000276270	MIR6799	hsa-mir-6799	microRNA 6799	ncRNA
139745	chr2	229872501	229872700	+	0	NA	intron (NM_001348327, intron 2 of 41)	intron (NM_001348327, intron 2 of 41)	49079	NM_001348334	9320		NM_004238	ENSG00000153827	TRIP12	MRD49|TRIP-12|TRIPC|ULF	thyroid hormone receptor interactor 12	protein-coding
79995	chr16	1854871	1855880	+	0	NA	intron (NM_001163560, intron 6 of 13)	AluSx4|SINE|Alu	16789	NM_152764	254528		NM_152764	ENSG00000162039	MEIOB	C16orf73|POF23|SPGF22|gs129	meiosis specific with OB-fold	protein-coding
121814	chr19	47928221	47929080	+	0	NA	promoter-TSS (NR_024217).2	promoter-TSS (NR_024217).2	-168	NR_024220	100170225		NR_024220		SNAR-C1	-	small NF90 (ILF3) associated RNA C1	snRNA
153435	chr22	25069851	25070930	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	42302	NR_038941	100128531		NR_038941	ENSG00000203280	KIAA1671-AS1	-	KIAA1671 antisense RNA 1	ncRNA
5966	chr1	26918871	26919230	+	0	NA	Intergenic	AluSx|SINE|Alu	-2693	NM_006600	10726		NM_006600	ENSG00000090273	NUDC	HNUDC|MNUDC|NPD011	nuclear distribution C, dynein complex regulator	protein-coding
145984	chr20	46361151	46362800	+	0	NA	intron (NM_173179, intron 1 of 9)	intron (NM_173179, intron 1 of 9)	2450	NM_173179	51006		NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding
16289	chr1	154164251	154164550	+	0	NA	3' UTR (NM_152263, exon 10 of 10)	3' UTR (NM_152263, exon 10 of 10)	-9284	NM_001159484	91181		NM_207308	ENSG00000143552	NUP210L	-	nucleoporin 210 like	protein-coding
42372	chr11	68815671	68816030	+	0	NA	intron (NM_001031847, intron 1 of 18)	intron (NM_001031847, intron 1 of 18)	26066	NM_001876	1374		NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding
177628	chr4	121185971	121186450	+	0	NA	intron (NM_001128843, intron 2 of 12)	intron (NM_001128843, intron 2 of 12)	-21889	NM_024873	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
64392	chr14	24160721	24162030	+	0	NA	TTS (NM_017999)	TTS (NM_017999)	110	NM_001385400	10379		NM_006084	ENSG00000213928	IRF9	IRF-9|ISGF3|ISGF3G|p48	interferon regulatory factor 9	protein-coding
6918	chr1	31642471	31642900	+	0	NA	intron (NM_012392, intron 1 of 4)	intron (NM_012392, intron 1 of 4)	1932	NM_001359651	553115		NM_012392	ENSG00000162517	PEF1	ABP32|PEF1A	penta-EF-hand domain containing 1	protein-coding
162998	chr3	49727121	49728480	+	0	NA	intron (NM_153273, intron 5 of 5)	intron (NM_153273, intron 5 of 5)	-3826	NM_013334	29925		NM_013334	ENSG00000173540	GMPPB	LGMDR19|MDDGA14|MDDGB14|MDDGC14	GDP-mannose pyrophosphorylase B	protein-coding
129621	chr2	70122051	70122380	+	0	NA	Intergenic	Intergenic	3101	NR_024444	100133985		NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
98297	chr17	46232571	46233780	+	0	NA	Intergenic	AluSz6|SINE|Alu	-7808	NM_001379198	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
96353	chr17	40072971	40073730	+	0	NA	intron (NM_199334, intron 1 of 8)	MIR|SINE|MIR	10385	NM_003250	7067		NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|THRalpha|THRalpha1|THRalpha2|TRalpha|TRalpha1|TRalpha2|c-ERBA-1|c-erbA	thyroid hormone receptor alpha	protein-coding
140208	chr2	231705971	231707600	+	0	NA	Intergenic	CpG	-1740	NM_001099285	5757		NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin alpha	protein-coding
62818	chr13	109761201	109761400	+	0	NA	intron (NM_003749, intron 1 of 1)	intron (NM_003749, intron 1 of 1)	25283	NM_003749	8660		NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding
92699	chr17	14077971	14078330	+	0	NA	intron (NM_001303, intron 3 of 6)	intron (NM_001303, intron 3 of 6)	8646	NM_001303	1352		NM_001303	ENSG00000006695	COX10	MC4DN3	cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10	protein-coding
90051	chr16	89925871	89926850	+	0	NA	intron (NM_006086, intron 1 of 3)	CpG	3018	NM_006086	10381		NM_006086	ENSG00000258947	TUBB3	CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4	tubulin beta 3 class III	protein-coding
66783	chr14	64688001	64688480	+	0	NA	Intergenic	Intergenic	-16184	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
219588	chr8	79828151	79828700	+	0	NA	intron (NR_110954, intron 2 of 5)	intron (NR_110954, intron 2 of 5)	43312	NR_110954	101927040		NR_110954	ENSG00000249328	LOC101927040	-	uncharacterized LOC101927040	ncRNA
42901	chr11	73378971	73379350	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	2492	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
165450	chr3	98566121	98566380	+	0	NA	Intergenic	Intergenic	27361	NM_000097	1371		NM_000097	ENSG00000080819	CPOX	COX|CPO|CPX|HARPO|HCP	coproporphyrinogen oxidase	protein-coding
57264	chr12	121588351	121588680	+	0	NA	Intergenic	AluSx|SINE|Alu	-7492	NM_032590	84678		NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding
119924	chr19	41770301	41770900	+	0	NA	intron (NM_002483, intron 5 of 5)	MER65-int|LTR|ERV1	15070	NM_002483	4680		NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA|NCA-50/90	CEA cell adhesion molecule 6	protein-coding
7508	chr1	33379101	33379300	+	0	NA	intron (NM_198040, intron 1 of 14)	intron (NM_198040, intron 1 of 14)	13585	NM_001385122	1912		NM_004427	ENSG00000134686	PHC2	EDR2|HPH2|PH2	polyhomeotic homolog 2	protein-coding
188452	chr5	154478921	154479450	+	0	NA	promoter-TSS (NM_004821)	promoter-TSS (NM_004821)	-958	NM_004821	9421		NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
16938	chr1	155910791	155912600	+	0	NA	promoter-TSS (NM_006912)	promoter-TSS (NM_006912)	-346	NM_001256820	6016		NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding
118234	chr19	35208951	35209480	+	0	NA	Intergenic	AluSx1|SINE|Alu	19510	NM_152481	148109		NM_152481	ENSG00000177558	FAM187B	TMEM162	family with sequence similarity 187 member B	protein-coding
193109	chr6	28939671	28940080	+	0	NA	Intergenic	HAL1|LINE|L1	-3909	NR_103538	729583		NR_103538		LINC01556	C6orf100|dJ25J6.5	long intergenic non-protein coding RNA 1556	ncRNA
53986	chr12	74999601	75000350	+	0	NA	Intergenic	L1MA10|LINE|L1	209773	NM_139136	3747		NM_139136	ENSG00000166006	KCNC2	DEE103|KV3.2	potassium voltage-gated channel subfamily C member 2	protein-coding
232634	chr9	136456321	136456830	+	0	NA	intron (NM_014866, intron 18 of 31)	intron (NM_014866, intron 18 of 31)	-16730	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
62111	chr13	95299451	95300100	+	0	NA	intron (NM_001301830, intron 1 of 19)	intron (NM_001301830, intron 1 of 19)	1676	NM_001105515	10257		NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4 (PEL blood group)	protein-coding
185285	chr5	126448471	126448980	+	0	NA	intron (NR_146195, intron 1 of 15)	intron (NR_146195, intron 1 of 15)	-16425	NM_001146322	65983		NM_023927	ENSG00000155324	GRAMD2B	GRAMD3|NS3TP2	GRAM domain containing 2B	protein-coding
120812	chr19	45478001	45479600	+	0	NA	Intergenic	Intergenic	10804	NM_006732	2354		NM_006732	ENSG00000125740	FOSB	AP-1|G0S3|GOS3|GOSB	FosB proto-oncogene, AP-1 transcription factor subunit	protein-coding
151390	chr21	45977101	45977500	+	0	NA	Intergenic	(CCT)n|Simple_repeat|Simple_repeat	4330	NR_109931	101928796		NR_109931		LOC101928796	-	uncharacterized LOC101928796	ncRNA
111310	chr19	3611001	3611650	+	0	NA	3' UTR (NM_001080543, exon 10 of 10)	3' UTR (NM_001080543, exon 10 of 10)	4078	NR_038865	404665		NM_001012712	ENSG00000226800	CACTIN-AS1	C19orf29-AS1|C19orf29OS	CACTIN antisense RNA 1	ncRNA
8471	chr1	40797151	40797830	+	0	NA	intron (NM_172163, intron 1 of 12)	L2b|LINE|L2	13703	NM_172163	9132		NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding
17961	chr1	160431451	160431850	+	0	NA	Intergenic	AluSq2|SINE|Alu	31086	NM_020335	57216		NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding
109208	chr19	460921	461200	+	0	NA	promoter-TSS (NM_012435)	promoter-TSS (NM_012435)	-64	NM_012435	25759		NM_012435	ENSG00000129946	SHC2	SCK|SHCB|SLI	SHC adaptor protein 2	protein-coding
218037	chr8	38789501	38791830	+	0	NA	intron (NR_148050, intron 2 of 4)	intron (NR_148050, intron 2 of 4)	2559	NM_001352798	6867		NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding
230863	chr9	129142771	129143500	+	0	NA	intron (NM_001271832, intron 8 of 8)	intron (NM_001271832, intron 8 of 8)	31447	NM_001193397	5524		NM_021131	ENSG00000119383	PTPA	PARK25|PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding
146819	chr20	51388101	51388450	+	0	NA	3' UTR (NM_001258296, exon 11 of 11)	3' UTR (NM_001258296, exon 11 of 11)	64702	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
75669	chr15	67784401	67784800	+	0	NA	intron (NM_145160, intron 21 of 21)	intron (NM_145160, intron 21 of 21)	-40909	NM_001365915	390598		NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding
103559	chr17	78673501	78673900	+	0	NA	TTS (NM_001365037)	TTS (NM_001365037)	-41643	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
71661	chr14	106874371	106875000	+	0	NA	Intergenic	Intergenic	-23686	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA
228357	chr9	99056071	99056230	+	0	NA	intron (NM_001855, intron 34 of 41)	intron (NM_001855, intron 34 of 41)	-48963	NM_001130916	7046		NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding
233557	chrX	273301	273950	+	0	NA	Intergenic	Intergenic	-2731	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
66821	chr14	64755601	64756830	+	0	NA	intron (NM_001355436, intron 32 of 35)	LTR60B|LTR|ERV1	29471	NR_107009	102465841		NR_107009	ENSG00000284269	MIR7855	hsa-mir-7855	microRNA 7855	ncRNA
94951	chr17	32086101	32086300	+	0	NA	Intergenic	AluSx|SINE|Alu	45864	NR_033412	6458		NR_033412	ENSG00000293287	SH3GL1P1	CNSA-P1|SH3GLP1	SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1	pseudo
143877	chr20	32564171	32564330	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	21083	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
232733	chr9	136628921	136629180	+	0	NA	Intergenic	Intergenic	-11869	NR_135288	401561		NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA
43397	chr11	77126971	77128150	+	0	NA	promoter-TSS (NM_000260)	promoter-TSS (NM_000260)	-686	NM_001369365	4647		NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding
206295	chr7	30134171	30137200	+	0	NA	intron (NM_152793, intron 1 of 2)	CpG	699	NM_152793	222166		NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
157894	chr22	49754051	49754750	+	0	NA	Intergenic	Intergenic	69931	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
117814	chr19	29951401	29951800	+	0	NA	intron (NR_045557, intron 1 of 9)	AluSq|SINE|Alu	9361	NR_045557	8725		NM_003796	ENSG00000105176	URI1	C19orf2|NNX3|PPP1R19|RMP|URI	URI1 prefoldin like chaperone	protein-coding
179725	chr5	188421	189500	+	0	NA	3' UTR (NM_052909, exon 20 of 20)	3' UTR (NM_052909, exon 20 of 20)	-2535	NM_001080478	389257		NM_001080478	ENSG00000185028	LRRC14B	-	leucine rich repeat containing 14B	protein-coding
150088	chr21	37413451	37414680	+	0	NA	intron (NM_101395, intron 2 of 12)	(AT)n|Simple_repeat|Simple_repeat	-4840	NM_130436	1859		NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding
118380	chr19	35724551	35724850	+	0	NA	exon (NM_014727, exon 9 of 37)	exon (NM_014727, exon 9 of 37)	6697	NM_014727	9757		NM_014727	ENSG00000272333	KMT2B	CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|MRD68|TRX2|WBP-7|WBP7	lysine methyltransferase 2B	protein-coding
104363	chr17	81000501	81000900	+	0	NA	TTS (NM_024591)	TTS (NM_024591)	8859	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
66128	chr14	60160001	60160930	+	0	NA	intron (NM_001322280, intron 1 of 6)	intron (NM_001322280, intron 1 of 6)	4933	NM_016029	51635		NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding
11412	chr1	89707301	89707850	+	0	NA	intron (NM_032270, intron 2 of 2)	intron (NM_032270, intron 2 of 2)	74455	NM_032270	84230		NM_032270	ENSG00000171488	LRRC8C	AD158|FAD158	leucine rich repeat containing 8 VRAC subunit C	protein-coding
27334	chr10	30583551	30584250	+	0	NA	Intergenic	Intergenic	45853	NM_183058	119180		NM_183058	ENSG00000151033	LYZL2	LYZD2	lysozyme like 2	protein-coding
141391	chr2	240829871	240830230	+	0	NA	Intergenic	L1ME4a|LINE|L1	-8647	NM_001379653	547		NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|NESCAVS|SPG30|UNC104	kinesin family member 1A	protein-coding
173015	chr4	4418901	4419280	+	0	NA	TTS (NM_001040101)	TTS (NM_001040101)	31988	NM_001382227	27065		NM_014392	ENSG00000168824	NSG1	D4S234|D4S234E|NEEP21|P21	neuronal vesicle trafficking associated 1	protein-coding
219949	chr8	89243371	89244130	+	0	NA	Intergenic	Intergenic	513961	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
101500	chr17	67663501	67663730	+	0	NA	intron (NM_181671, intron 6 of 9)	MER66B|LTR|ERV1	-54218	NM_001303272	25926		NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding
221054	chr8	116839701	116840300	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-34424	NR_033886	644660		NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA
59955	chr13	31806721	31807780	+	0	NA	Intergenic	L2|LINE|L2	-39533	NR_027062	196549		NM_145293		EEF1DP3	-	eukaryotic translation elongation factor 1 delta pseudogene 3	pseudo
211001	chr7	102288721	102289250	+	0	NA	promoter-TSS (NM_001359231)	promoter-TSS (NM_001359231)	-481	NM_001359229	10603		NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding
69103	chr14	92440971	92441130	+	0	NA	intron (NM_153647, intron 5 of 17)	intron (NM_153647, intron 5 of 17)	-72731	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
35831	chr11	2287021	2287280	+	0	NA	Intergenic	L1MC4|LINE|L1	14768	NM_001329958	29125		NM_014144	ENSG00000110665	C11orf21	-	chromosome 11 open reading frame 21	protein-coding
31839	chr10	99656201	99656800	+	0	NA	Intergenic	Intergenic	-3009	NM_020354	57089		NM_020354	ENSG00000198018	ENTPD7	LALP1	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
52732	chr12	56626671	56627030	+	0	NA	intron (NM_013449, intron 1 of 28)	intron (NM_013449, intron 1 of 28)	3476	NM_001300905	11176		NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding
168157	chr3	139329051	139330100	+	0	NA	Intergenic	Intergenic	-14419	NM_001363893	56945		NM_020191	ENSG00000175110	MRPS22	C3orf5|COXPD5|GIBT|GK002|MRP-S22|ODG7|RPMS22|mS22	mitochondrial ribosomal protein S22	protein-coding
214681	chr7	150968801	150969000	+	0	NA	intron (NM_172056, intron 2 of 8)	intron (NM_172056, intron 2 of 8)	9414	NM_172056	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
200103	chr6	130195351	130195450	+	0	NA	intron (NM_001258275, intron 7 of 13)	HERVH-int|LTR|ERV1	20485	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
226826	chr9	77751521	77751780	+	0	NA	intron (NM_002072, intron 5 of 6)	intron (NM_002072, intron 5 of 6)	-103328	NM_004297	9630		NM_004297	ENSG00000156049	GNA14	HG1I	G protein subunit alpha 14	protein-coding
6670	chr1	29131701	29132100	+	0	NA	Intergenic	AluJb|SINE|Alu	-7997	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
46680	chr11	128735621	128736730	+	0	NA	intron (NM_001271010, intron 1 of 9)	intron (NM_001271010, intron 1 of 9)	-40152	NR_038908	100507392		NR_038908	ENSG00000254703	SENCR	FLI1-AS1|lncRNA9	smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA	ncRNA
73551	chr15	44229221	44229350	+	0	NA	Intergenic	LTR5A|LTR|ERVK	-34014	NR_104455	84978		NM_032892	ENSG00000171877	FRMD5	NEDEMA	FERM domain containing 5	protein-coding
202780	chr6	159076201	159076400	+	0	NA	Intergenic	Intergenic	-31148	NM_152133	117289		NM_054114	ENSG00000164691	TAGAP	ARHGAP47|FKSG15|IDDM21|TAGAP1	T cell activation RhoGTPase activating protein	protein-coding
124528	chr2	223401	223680	+	0	NA	intron (NR_104226, intron 10 of 10)	intron (NR_104226, intron 10 of 10)	32800	NM_001282687	26751		NM_015677	ENSG00000035115	SH3YL1	RAY	SH3 and SYLF domain containing 1	protein-coding
211334	chr7	104883701	104884180	+	0	NA	intron (NM_199000, intron 2 of 2)	intron (NM_199000, intron 2 of 2)	42705	NR_027374	723809		NR_027374	ENSG00000225329	LHFPL3-AS2	lncPENG	LHFPL3 antisense RNA 2	ncRNA
55866	chr12	109432651	109433580	+	0	NA	intron (NM_001101421, intron 19 of 30)	intron (NM_001101421, intron 19 of 30)	44185	NR_133897	83892		NM_031954	ENSG00000110906	KCTD10	BTBD28|MSTP028|ULRO61|hBACURD3	potassium channel tetramerization domain containing 10	protein-coding
54010	chr12	75478171	75478980	+	0	NA	Intergenic	Intergenic	-2180	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
107016	chr18	32085121	32086430	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-6099	NM_016271	51444		NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding
78026	chr15	89936101	89936880	+	0	NA	Intergenic	Intergenic	-23538	NM_001199058	100526783		NM_001199058	ENSG00000250021	ARPIN-AP3S2	ARPIN|C15orf38|C15orf38-AP3S2	ARPIN-AP3S2 readthrough	protein-coding
18504	chr1	161744151	161744450	+	0	NA	Intergenic	L2c|LINE|L2	-5486	NM_007240	11266		NM_007240	ENSG00000081721	DUSP12	DUSP1|YVH1	dual specificity phosphatase 12	protein-coding
84543	chr16	30554321	30554580	+	0	NA	3' UTR (NM_033410, exon 3 of 3)	3' UTR (NM_033410, exon 3 of 3)	3924	NM_033410	92595		NM_033410	ENSG00000169951	ZNF764	-	zinc finger protein 764	protein-coding
122348	chr19	49301171	49301550	+	0	NA	intron (NM_014037, intron 7 of 11)	L1M3c|LINE|L1	7508	NR_036209	100422979		NR_036209	ENSG00000265407	MIR4324	mir-4324	microRNA 4324	ncRNA
65207	chr14	49694471	49694630	+	0	NA	intron (NM_172193, intron 1 of 12)	Tigger1|DNA|TcMar-Tigger	1430	NM_172193	122773		NM_172193	ENSG00000197776	KLHDC1	MST025	kelch domain containing 1	protein-coding
35138	chr11	717751	718050	+	0	NA	intron (NM_022772, intron 4 of 20)	AluY|SINE|Alu	-10817	NM_001367390	10522		NM_021008	ENSG00000177030	DEAF1	MRD24|NEDHELS|NUDR|SPN|VSVS|ZMYND5	DEAF1 transcription factor	protein-coding
104069	chr17	80217571	80217930	+	0	NA	intron (NM_001352921, intron 1 of 7)	intron (NM_001352921, intron 1 of 7)	2583	NM_001352921	6448		NM_000199	ENSG00000181523	SGSH	HSS|MPS3A|SFMD	N-sulfoglucosamine sulfohydrolase	protein-coding
224984	chr9	33102051	33102150	+	0	NA	Intergenic	Intergenic	-6592	NR_162131	113219452		NR_162131		MIR12117	-	microRNA 12117	ncRNA
234067	chrX	8006071	8006230	+	0	NA	Intergenic	Intergenic	-78411	NM_001142389	8228		NM_004650	ENSG00000006757	PNPLA4	DXS1283E|GS2|iPLA2eta	patatin like phospholipase domain containing 4	protein-coding
49913	chr12	39615701	39616180	+	0	NA	intron (NM_005164, intron 2 of 9)	MIRb|SINE|MIR	3863	NM_005164	225		NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding
75003	chr15	63971221	63971980	+	0	NA	intron (NR_169523, intron 3 of 11)	intron (NR_169523, intron 3 of 11)	43326	NR_120344	101928988		NR_120344	ENSG00000259351	LOC101928988	-	uncharacterized LOC101928988	ncRNA
217830	chr8	37416571	37417100	+	0	NA	intron (NR_121620, intron 6 of 6)	MER63A|DNA|hAT-Blackjack	77078	NR_121620	100507420		NR_121620	ENSG00000253414	LINC01605	LincDUSP|ODIR1	long intergenic non-protein coding RNA 1605	ncRNA
19040	chr1	169692371	169693480	+	0	NA	intron (NM_000655, intron 8 of 8)	intron (NM_000655, intron 8 of 8)	15932	NR_029467	6402		NM_000655	ENSG00000188404	SELL	CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1	selectin L	protein-coding
26921	chr10	26471751	26472400	+	0	NA	intron (NM_019043, intron 2 of 14)	intron (NM_019043, intron 2 of 14)	33734	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
135920	chr2	171598721	171599100	+	0	NA	Intergenic	L1MC5|LINE|L1	76436	NM_024843	79901		NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
116435	chr19	18020501	18020700	+	0	NA	Intergenic	Intergenic	12430	NM_015683	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
322	chr1	981621	981930	+	0	NA	promoter-TSS (NM_001369898)	promoter-TSS (NM_001369898)	318	NM_001369897	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
96634	chr17	40597271	40597780	+	0	NA	Intergenic	Intergenic	-32053	NM_001301714	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
174936	chr4	49129751	49130200	+	0	NA	Intergenic	(TCCAT)n|Simple_repeat|Simple_repeat	143333	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
137305	chr2	195660171	195660730	+	0	NA	intron (NM_020342, intron 1 of 9)	intron (NM_020342, intron 1 of 9)	3224	NM_020342	57181		NM_020342	ENSG00000196950	SLC39A10	LZT-Hs2|ZIP10	solute carrier family 39 member 10	protein-coding
85110	chr16	34064651	34064750	+	0	NA	Intergenic	Intergenic	-98878	NR_162093	113218496		NR_162093		MIR9901	-	microRNA 9901	ncRNA
7061	chr1	31984421	31985200	+	0	NA	Intergenic	Intergenic	-29058	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
27653	chr10	33008471	33009350	+	0	NA	Intergenic	Intergenic	-50680	NM_002211	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
134264	chr2	135658971	135659230	+	0	NA	intron (NM_001378107, intron 18 of 26)	Tigger3b|DNA|TcMar-Tigger	-6297	NR_029672	406915		NR_029672	ENSG00000207654	MIR128-1	MIR128A|MIRN128-1|MIRN128A|mir-128-1	microRNA 128-1	ncRNA
162966	chr3	49683801	49684000	+	0	NA	TTS (NM_001640)	TTS (NM_001640)	4863	NM_020998	4485		NM_020998	ENSG00000173531	MST1	D3F15S2|DNF15S2|HGFL|MSP|NF15S2	macrophage stimulating 1	protein-coding
125770	chr2	23526051	23526350	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	141021	NM_052920	114818		NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding
91030	chr17	2826121	2826380	+	0	NA	intron (NM_001100398, intron 2 of 23)	AluSc8|SINE|Alu	29812	NM_015085	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
119042	chr19	39031421	39032650	+	0	NA	exon (NM_178820, exon 2 of 6)	exon (NM_178820, exon 2 of 6)	514	NM_178820	126433		NM_178820	ENSG00000161243	FBXO27	FBG5|Fbx27	F-box protein 27	protein-coding
211280	chr7	103033871	103034030	+	0	NA	intron (NM_001111038, intron 2 of 18)	LTR12C|LTR|ERV1	40618	NM_145032	222235		NM_145032	ENSG00000161040	FBXL13	CFAP169|DRC6|Fbl13	F-box and leucine rich repeat protein 13	protein-coding
132610	chr2	108597251	108597750	+	0	NA	intron (NM_001193488, intron 1 of 9)	intron (NM_001193488, intron 1 of 9)	9194	NM_004987	3987		NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
121257	chr19	46687721	46688330	+	0	NA	intron (NM_001079881, intron 15 of 18)	AluJr|SINE|Alu	21329	NR_036157	100422913		NR_036157		MIR320E	mir-320e	microRNA 320e	ncRNA
50910	chr12	49295071	49295780	+	0	NA	non-coding (NR_120449, exon 6 of 8)	non-coding (NR_120449, exon 6 of 8)	278	NM_006262	5630		NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding
191150	chr6	4647471	4647830	+	0	NA	Intergenic	Intergenic	37085	NR_122107	497048		NM_001011540	ENSG00000205444	KU-MEL-3	-	uncharacterized LOC497048	ncRNA
37975	chr11	34918271	34918930	+	0	NA	intron (NM_003477, intron 1 of 10)	intron (NM_003477, intron 1 of 10)	1982	NM_003477	8050		NM_003477	ENSG00000110435	PDHX	DLDBP|E3BP|OPDX|PDHXD|PDX1|proX	pyruvate dehydrogenase complex component X	protein-coding
197578	chr6	79910451	79910750	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	36953	NM_022726	6785		NM_022726	ENSG00000118402	ELOVL4	ADMD|CT118|ISQMR|SCA34|STGD2|STGD3	ELOVL fatty acid elongase 4	protein-coding
232116	chr9	133736901	133737380	+	0	NA	intron (NM_007101, intron 1 of 20)	intron (NM_007101, intron 1 of 20)	1212	NM_001134707	1757		NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding
24323	chr1	237603051	237603230	+	0	NA	intron (NM_001035, intron 35 of 104)	LSU-rRNA_Hsa|rRNA|rRNA	132021	NR_039626	100616141		NR_039626	ENSG00000266262	MIR4428	-	microRNA 4428	ncRNA
30143	chr10	74103601	74103800	+	0	NA	intron (NM_014000, intron 14 of 21)	intron (NM_014000, intron 14 of 21)	47128	NM_001320263	26985		NM_012095	ENSG00000185009	AP3M1	-	adaptor related protein complex 3 subunit mu 1	protein-coding
59437	chr13	25868601	25868800	+	0	NA	intron (NM_016529, intron 33 of 36)	intron (NM_016529, intron 33 of 36)	183316	NM_001007538	387914		NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding
218210	chr8	42018271	42018430	+	0	NA	intron (NM_001305878, intron 2 of 13)	AluSq|SINE|Alu	-33400	NR_136589	105379393		NR_136589		KAT6A-AS1	-	KAT6A antisense RNA 1	ncRNA
22918	chr1	225911021	225911880	+	0	NA	Intergenic	Intergenic	10692	NR_106799	102466270		NR_106799	ENSG00000284519	MIR6741	hsa-mir-6741	microRNA 6741	ncRNA
208494	chr7	67371801	67372100	+	0	NA	Intergenic	Intergenic	35974	NR_108104	101929736		NR_108104	ENSG00000291153	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
119199	chr19	39438471	39438830	+	0	NA	Intergenic	Intergenic	-2701	NM_001363860	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
159119	chr3	12590571	12590730	+	0	NA	intron (NR_148942, intron 12 of 16)	intron (NR_148942, intron 12 of 16)	-29651	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
24475	chr1	244058151	244058450	+	0	NA	TTS (NM_006352)	TTS (NM_006352)	5095	NM_006352	10472		NM_006352	ENSG00000179456	ZBTB18	C1DELq42q44|C1DELq43q44|C2H2-171|DEL1Q42Q44|DEL1Q43Q44|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding
97205	chr17	42721021	42721480	+	0	NA	intron (NM_001321082, intron 5 of 19)	intron (NM_001321082, intron 5 of 19)	-13099	NR_106838	102466195		NR_106838	ENSG00000275273	MIR6780A	hsa-mir-6780a	microRNA 6780a	ncRNA
131493	chr2	96527151	96527900	+	0	NA	TTS (NR_135564)	TTS (NR_135564)	4781	NR_135564	105373496		NR_135564	ENSG00000235480	LOC105373496	-	uncharacterized LOC105373496	ncRNA
41084	chr11	65517801	65518630	+	0	NA	Intergenic	Intergenic	-6868	NM_001048218	57410		NM_020680	ENSG00000142186	SCYL1	GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP	SCY1 like pseudokinase 1	protein-coding
204962	chr7	6372271	6372430	+	0	NA	Intergenic	Alu|SINE|Alu	-2177	NM_006908	5879		NM_006908	ENSG00000136238	RAC1	MIG5|MRD48|Rac-1|TC-25|p21-Rac1	Rac family small GTPase 1	protein-coding
60893	chr13	46152651	46152950	+	0	NA	exon (NM_002298, exon 7 of 16)	exon (NM_002298, exon 7 of 16)	29377	NM_002298	3936		NM_002298	ENSG00000136167	LCP1	CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2	lymphocyte cytosolic protein 1	protein-coding
149061	chr21	15514021	15514680	+	0	NA	Intergenic	Intergenic	-215584	NM_001283041	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
206413	chr7	32489951	32491330	+	0	NA	promoter-TSS (NR_024466)	promoter-TSS (NR_024466)	-260	NM_012322	23658		NM_012322	ENSG00000106355	LSM5	YER146W	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
231385	chr9	130707121	130708080	+	0	NA	Intergenic	Intergenic	-6281	NM_007313	25		NM_005157	ENSG00000097007	ABL1	ABL|BCR-ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding
60922	chr13	46203051	46203150	+	0	NA	Intergenic	Charlie29a|DNA|hAT-Charlie	-8828	NM_001282460	220416		NM_001024609	ENSG00000173988	LRRC63	-	leucine rich repeat containing 63	protein-coding
79462	chr16	732801	733080	+	0	NA	intron (NM_022493, intron 7 of 10)	intron (NM_022493, intron 7 of 10)	5834	NM_032304	84264		NM_032304	ENSG00000103253	HAGHL	-	hydroxyacylglutathione hydrolase like	protein-coding
197986	chr6	90046601	90046800	+	0	NA	intron (NM_021813, intron 5 of 8)	intron (NM_021813, intron 5 of 8)	152231	NM_032602	84694		NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
165922	chr3	107414421	107414680	+	0	NA	Intergenic	L1MB2|LINE|L1	-16380	NR_110039	101929607		NR_110039	ENSG00000273125	LINC01990	-	long intergenic non-protein coding RNA 1990	ncRNA
9629	chr1	52425101	52425300	+	0	NA	intron (NM_015269, intron 29 of 29)	L2b|LINE|L2	20598	NM_032864	84950		NM_032284	ENSG00000134748	PRPF38A	PRP38A|Prp38	pre-mRNA processing factor 38A	protein-coding
186369	chr5	134902871	134903030	+	0	NA	Intergenic	Intergenic	-2181	NM_032151	84105		NM_032151	ENSG00000132570	PCBD2	DCOH2|DCOHM|PHS2	pterin-4 alpha-carbinolamine dehydratase 2	protein-coding
133473	chr2	119842671	119842830	+	0	NA	intron (NM_002830, intron 2 of 26)	L1MD2|LINE|L1	82828	NM_002830	5775		NM_002830	ENSG00000088179	PTPN4	MEG|PTPMEG|PTPMEG1	protein tyrosine phosphatase non-receptor type 4	protein-coding
151738	chr22	17776801	17777850	+	0	NA	promoter-TSS (NR_103718)	promoter-TSS (NR_103718)	35	NR_103718	200298		NM_178503	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA
78851	chr15	100329051	100329350	+	0	NA	intron (NM_139057, intron 3 of 21)	intron (NM_139057, intron 3 of 21)	12775	NM_139057	170691		NM_139057	ENSG00000140470	ADAMTS17	WMS4	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein-coding
179892	chr5	670121	670380	+	0	NA	intron (NM_007030, intron 2 of 3)	intron (NM_007030, intron 2 of 3)	23102	NM_007030	11076		NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding
113421	chr19	9767071	9767230	+	0	NA	intron (NM_001353800, intron 1 of 6)	AluSp|SINE|Alu	1588	NR_148544	162993		NM_001077624	ENSG00000196605	ZNF846	-	zinc finger protein 846	protein-coding
134786	chr2	147727301	147727550	+	0	NA	Intergenic	L1PA2|LINE|L1	-117092	NM_001278579	92		NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
117200	chr19	19384951	19387050	+	0	NA	non-coding (NR_169268, exon 1 of 12)	non-coding (NR_169268, exon 1 of 12)	157	NM_001384518	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
210717	chr7	100602871	100603030	+	0	NA	non-coding (NR_038910, exon 2 of 9)	non-coding (NR_038910, exon 2 of 9)	587	NM_002593	5118		NM_002593	ENSG00000106333	PCOLCE	PCPE|PCPE-1|PCPE1	procollagen C-endopeptidase enhancer	protein-coding
1268	chr1	2308421	2309480	+	0	NA	3' UTR (NM_003036, exon 7 of 7)	3' UTR (NM_003036, exon 7 of 7)	43711	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
19611	chr1	179883601	179884650	+	0	NA	intron (NM_015602, intron 1 of 9)	intron (NM_015602, intron 1 of 9)	1840	NM_001267578	26092		NM_015602	ENSG00000143337	TOR1AIP1	LAP1|LAP1B|LAP1C|LGMD2Y	torsin 1A interacting protein 1	protein-coding
136484	chr2	177223551	177223650	+	0	NA	non-coding (NR_138470, exon 12 of 12)	non-coding (NR_138470, exon 12 of 12)	10806	NR_138470	220988		NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding
85451	chr16	50611551	50611650	+	0	NA	intron (NM_033119, intron 4 of 9)	intron (NM_033119, intron 4 of 9)	-57255	NR_110908	101927272		NR_110908		LOC101927272	-	uncharacterized LOC101927272	ncRNA
81459	chr16	8890201	8890400	+	0	NA	Intergenic	Intergenic	-21288	NM_001278260	23589		NM_014316	ENSG00000153048	CARHSP1	CRHSP-24|CRHSP24|CSDC1	calcium regulated heat stable protein 1	protein-coding
238315	chrX	149512151	149512900	+	0	NA	Intergenic	Intergenic	-7219	NM_001166550	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
223515	chr8	144102251	144102430	+	0	NA	intron (NM_030974, intron 2 of 8)	AluSx|SINE|Alu	1433	NR_038270	81858		NM_030974	ENSG00000179526	SHARPIN	AIFID|SIPL1	SHANK associated RH domain interactor	protein-coding
43027	chr11	74006401	74006700	+	0	NA	intron (NM_022803, intron 2 of 5)	MIRc|SINE|MIR	2535	NM_003356	7352		NM_003356	ENSG00000175564	UCP3	SLC25A9	uncoupling protein 3	protein-coding
13804	chr1	117573521	117573780	+	0	NA	Intergenic	Intergenic	32120	NR_121626	100996263		NR_121626	ENSG00000236866	TENT5C-DT	-	TENT5C divergent transcript	ncRNA
51676	chr12	53068271	53068830	+	0	NA	intron (NM_032840, intron 6 of 10)	intron (NM_032840, intron 6 of 10)	10840	NM_032840	84926		NM_032840	ENSG00000167778	SPRYD3	-	SPRY domain containing 3	protein-coding
95797	chr17	38723571	38723830	+	0	NA	intron (NM_005937, intron 18 of 19)	intron (NM_005937, intron 18 of 19)	4009	NR_039879	100616153		NR_039879	ENSG00000273627	MIR4726	-	microRNA 4726	ncRNA
54641	chr12	92928471	92929800	+	0	NA	5' UTR (NM_003566, exon 1 of 29)	5' UTR (NM_003566, exon 1 of 29)	160	NM_003566	8411		NM_003566	ENSG00000102189	EEA1	MST105|MSTP105|ZFYVE2	early endosome antigen 1	protein-coding
189230	chr5	171913851	171913950	+	0	NA	intron (NM_033645, intron 1 of 11)	intron (NM_033645, intron 1 of 11)	92738	NM_033644	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
172382	chr4	1762201	1762580	+	0	NA	Intergenic	Intergenic	-30903	NM_000142	2261		NM_000142	ENSG00000068078	FGFR3	ACH|CD333|CEK2|HSFGFR3EX|JTK4	fibroblast growth factor receptor 3	protein-coding
159060	chr3	11646601	11647000	+	0	NA	intron (NM_014667, intron 2 of 5)	intron (NM_014667, intron 2 of 5)	-2885	NM_001128219	9686		NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding
87877	chr16	78101601	78102050	+	0	NA	intron (NR_120436, intron 1 of 5)	L2b|LINE|L2	2171	NM_130791	51741		NM_016373	ENSG00000186153	WWOX	D16S432E|DEE28|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
47009	chr12	264951	265250	+	0	NA	Intergenic	Intergenic	-2227	NM_001190997	6540		NM_016615	ENSG00000010379	SLC6A13	GAT-2|GAT2|GAT3	solute carrier family 6 member 13	protein-coding
78158	chr15	90416271	90416430	+	0	NA	intron (NM_003870, intron 2 of 37)	L1PA5|LINE|L1	28108	NM_003870	8826		NM_003870	ENSG00000140575	IQGAP1	HUMORFA01|SAR1|p195	IQ motif containing GTPase activating protein 1	protein-coding
192778	chr6	26531921	26532210	+	0	NA	Intergenic	Intergenic	-6301	NM_006353	10473		NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding
188920	chr5	160417771	160417930	+	0	NA	intron (NM_001364520, intron 1 of 16)	L2a|LINE|L2	1231	NM_001364518	10569		NM_006425	ENSG00000164609	SLU7	9G8|hSlu7	SLU7 homolog, splicing factor	protein-coding
143908	chr20	32589321	32589680	+	0	NA	intron (NR_034152, intron 1 of 2)	intron (NR_034152, intron 1 of 2)	2021	NR_034152	149950		NM_001010976	ENSG00000204393	NOL4L-DT	-	NOL4L divergent transcript	ncRNA
100061	chr17	58154671	58155030	+	0	NA	promoter-TSS (NM_012374)	promoter-TSS (NM_012374)	-304	NM_012374	26689		NM_012374	ENSG00000141194	OR4D1	OR17-23|OR4D3|OR4D4P|TPCR16	olfactory receptor family 4 subfamily D member 1	protein-coding
67760	chr14	73721701	73721900	+	0	NA	intron (NM_001043318, intron 10 of 11)	intron (NM_001043318, intron 10 of 11)	-7416	NM_006029	9240		NM_006029	ENSG00000176903	PNMA1	MA1	PNMA family member 1	protein-coding
210560	chr7	100342951	100343050	+	0	NA	intron (NR_036570, intron 3 of 16)	MLT1G3|LTR|ERVL-MaLR	-6693	NR_003613	5379		NM_005394		PMS2P1	PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudo
207580	chr7	44952671	44952830	+	0	NA	Intergenic	AluSz6|SINE|Alu	26265	NM_033054	64005		NM_033054	ENSG00000136286	MYO1G	HA2|HLA-HA2|MHAG	myosin IG	protein-coding
195340	chr6	36624471	36624980	+	0	NA	Intergenic	Intergenic	-2213	NR_037491	100500885		NR_037491	ENSG00000263894	MIR3925	-	microRNA 3925	ncRNA
14380	chr1	144153801	144154250	+	0	NA	Intergenic	AluJr|SINE|Alu	94180	NR_027354	645166		NR_027354	ENSG00000288905	LSP1P5	-	LSP1 pseudogene 5	pseudo
117081	chr19	19113071	19113230	+	0	NA	TTS (NM_001321544)	TTS (NM_001321544)	25328	NM_017814	54929		NM_017814	ENSG00000064545	TMEM161A	AROS-29|AROS29	transmembrane protein 161A	protein-coding
208006	chr7	55538401	55538600	+	0	NA	promoter-TSS (NM_001284284)	promoter-TSS (NM_001284284)	167	NM_001284283	81552		NM_030796	ENSG00000154978	VOPP1	ECOP|GASP|WBP1L2	VOPP1 WW domain binding protein	protein-coding
126874	chr2	32050951	32051250	+	0	NA	Intergenic	AluY|SINE|Alu	-11265	NR_135587	84661		NM_032574	ENSG00000162961	DPY30	Cps25|HDPY-30|Saf19	dpy-30 histone methyltransferase complex regulatory subunit	protein-coding
64022	chr14	22509921	22510880	+	0	NA	Intergenic	OldhAT1|DNA|hAT-Ac	-27441	NR_148361	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
195875	chr6	41585551	41585850	+	0	NA	intron (NM_138457, intron 5 of 16)	intron (NM_138457, intron 5 of 16)	-13023	NR_039784	100616178		NR_039784	ENSG00000266494	MIR4641	-	microRNA 4641	ncRNA
3482	chr1	16007021	16007430	+	0	NA	3' UTR (NM_178840, exon 2 of 2)	3' UTR (NM_178840, exon 2 of 2)	2989	NM_178840	149563		NM_178840	ENSG00000183888	SRARP	C1orf64|ERRF	steroid receptor associated and regulated protein	protein-coding
111163	chr19	3332321	3332880	+	0	NA	Intergenic	(CCTT)n|Simple_repeat|Simple_repeat	-27030	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
125123	chr2	9802651	9802950	+	0	NA	Intergenic	Intergenic	-40642	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
162612	chr3	48704671	48705030	+	0	NA	intron (NM_016291, intron 1 of 5)	AluSz6|SINE|Alu	12371	NM_016291	51447		NM_016291	ENSG00000068745	IP6K2	IHPK2|InsP6K2|PIUS	inositol hexakisphosphate kinase 2	protein-coding
10132	chr1	59570451	59570780	+	0	NA	intron (NM_001244714, intron 6 of 13)	intron (NM_001244714, intron 6 of 13)	54985	NM_001278224	55277		NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
209467	chr7	76511421	76511680	+	0	NA	intron (NM_030570, intron 1 of 4)	intron (NM_030570, intron 1 of 4)	998	NM_001347684	105375355		NM_030570	ENSG00000243566	UPK3B	P35|UP3B|UPIIIB	uroplakin 3B	protein-coding
182894	chr5	70056701	70056900	+	0	NA	intron (NM_022874, intron 1 of 7)	LTR19C|LTR|ERV1	7131	NM_000344	6606		NM_000344	ENSG00000172062	SMN1	BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A	survival of motor neuron 1, telomeric	protein-coding
139469	chr2	223959571	223960100	+	0	NA	exon (NM_022915, exon 2 of 4)	exon (NM_022915, exon 2 of 4)	2372	NM_022915	65080		NM_022915	ENSG00000135900	MRPL44	COXPD16|L44MT|MRP-L44|mL44	mitochondrial ribosomal protein L44	protein-coding
104110	chr17	80284471	80284630	+	0	NA	intron (NM_020954, intron 3 of 16)	AluSx|SINE|Alu	23698	NM_001256071	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
221440	chr8	124041401	124041600	+	0	NA	promoter-TSS (NR_040044)	promoter-TSS (NR_040044)	-718	NR_040044	439941		NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
210689	chr7	100567021	100569700	+	0	NA	TTS (NM_006076)	TTS (NM_006076)	5540	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
123883	chr19	55303251	55303350	+	0	NA	intron (NM_032430, intron 10 of 18)	intron (NM_032430, intron 10 of 18)	19303	NM_032430	84446		NM_032430	ENSG00000160469	BRSK1	SAD-B|hSAD1	BR serine/threonine kinase 1	protein-coding
143658	chr20	31895121	31895530	+	0	NA	intron (NR_148013, intron 3 of 16)	MER65B|LTR|ERV1	15508	NR_160277	164395		NM_001008409	ENSG00000131044	TTLL9	C20orf125	tubulin tyrosine ligase like 9	protein-coding
67795	chr14	73764271	73764430	+	0	NA	intron (NM_001043318, intron 1 of 11)	AluSz6|SINE|Alu	-4047	NM_001367710	91748		NM_194278	ENSG00000156030	MIDEAS	C14orf117|C14orf43|ELMSAN1|LSR68|c14_5541	mitotic deacetylase associated SANT domain protein	protein-coding
45532	chr11	118748921	118749930	+	0	NA	3' UTR (NM_001257191, exon 14 of 14)	3' UTR (NM_001257191, exon 14 of 14)	41523	NM_001257191	1656		NM_004397	ENSG00000110367	DDX6	HLR2|IDDILF|P54|RCK|Rck/p54	DEAD-box helicase 6	protein-coding
207669	chr7	45099401	45099600	+	0	NA	TTS (NM_001261834)	TTS (NM_001261834)	4982	NR_002919	654319		NR_002919	ENSG00000206838	SNORA5A	ACA5|ACA5A/B/C	small nucleolar RNA, H/ACA box 5A	snoRNA
52474	chr12	55968551	55968650	+	0	NA	intron (NM_052827, intron 3 of 5)	L2c|LINE|L2	1770	NM_001290230	1017		NM_001798	ENSG00000123374	CDK2	CDKN2|p33(CDK2)	cyclin dependent kinase 2	protein-coding
137667	chr2	197451701	197451900	+	0	NA	Intergenic	L2a|LINE|L2	-1623	NM_025147	80219		NM_025147	ENSG00000115520	COQ10B	-	coenzyme Q10B	protein-coding
12069	chr1	98856371	98856530	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-147826	NR_033940	100129620		NR_033940	ENSG00000232825	PLPPR5-AS1	-	PLPPR5 antisense RNA 1	ncRNA
175647	chr4	76511101	76511330	+	0	NA	intron (NM_020859, intron 1 of 10)	intron (NM_020859, intron 1 of 10)	-62353	NR_039654	100616299		NR_039654	ENSG00000263445	MIR4450	mir-4450	microRNA 4450	ncRNA
204616	chr7	5368551	5369280	+	0	NA	intron (NM_001080495, intron 11 of 29)	intron (NM_001080495, intron 11 of 29)	54631	NM_001080495	84629		NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding
72767	chr15	39756651	39757100	+	0	NA	intron (NM_001324338, intron 5 of 11)	intron (NM_001324338, intron 5 of 11)	25966	NM_001324338	161835		NM_152597	ENSG00000150667	FSIP1	HSD10	fibrous sheath interacting protein 1	protein-coding
153527	chr22	26565771	26566280	+	0	NA	promoter-TSS (NM_001008566)	promoter-TSS (NM_001008566)	-684	NM_001008566	8459		NM_003595	ENSG00000128294	TPST2	TANGO13B|TPST-2	tyrosylprotein sulfotransferase 2	protein-coding
189384	chr5	172718771	172718930	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-36653	NR_161233	101928093		NR_161233	ENSG00000253295	LOC101928093	-	uncharacterized LOC101928093	ncRNA
48125	chr12	7895671	7895830	+	0	NA	Intergenic	Intergenic	-4554	NM_001286237	144195		NM_153449	ENSG00000173262	SLC2A14	GLUT14|SLC2A3P3	solute carrier family 2 member 14	protein-coding
218804	chr8	59054151	59054450	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	64847	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
228851	chr9	112316121	112316550	+	0	NA	intron (NM_001375918, intron 1 of 13)	MLT1F2|LTR|ERVL-MaLR	16691	NM_001244898	9991		NM_005156	ENSG00000119314	PTBP3	ROD1	polypyrimidine tract binding protein 3	protein-coding
202852	chr6	159778501	159778700	+	0	NA	3' UTR (NM_001008897, exon 11 of 11)	3' UTR (NM_001008897, exon 11 of 11)	1781	NR_002960	677806		NR_002960	ENSG00000207392	SNORA20	ACA20	small nucleolar RNA, H/ACA box 20	snoRNA
11635	chr1	91752721	91752980	+	0	NA	intron (NR_036634, intron 5 of 17)	AluJb|SINE|Alu	133301	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
143371	chr20	26297321	26297780	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-88317	NR_040095	284801		NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
189017	chr5	168679401	168679850	+	0	NA	intron (NM_003062, intron 32 of 35)	intron (NM_003062, intron 32 of 35)	-27302	NR_130737	101927969		NR_130737		SLIT3-AS2	-	SLIT3 antisense RNA 2	ncRNA
212418	chr7	128209471	128210280	+	0	NA	Intergenic	Intergenic	2003	NR_029596	406917		NR_029596	ENSG00000207705	MIR129-1	MIR-129b|MIRN129-1|mir-129-1	microRNA 129-1	ncRNA
170756	chr3	188403551	188403850	+	0	NA	intron (NM_001167671, intron 3 of 11)	intron (NM_001167671, intron 3 of 11)	164966	NR_046623	100873917		NR_046623	ENSG00000224563	LPP-AS1	-	LPP antisense RNA 1	ncRNA
34701	chr10	133437871	133438300	+	0	NA	Intergenic	LTR13|LTR|ERVK	-13468	NM_001012508	503542		NM_001012508	ENSG00000203772	SPRN	SHADOO|SHO|bA108K14.1	shadow of prion protein	protein-coding
43199	chr11	75418721	75418980	+	0	NA	intron (NM_001256802, intron 6 of 6)	intron (NM_001256802, intron 6 of 6)	11779	NM_001039548	283212		NM_173583	ENSG00000149243	KLHL35	-	kelch like family member 35	protein-coding
12603	chr1	109046151	109046450	+	0	NA	Intergenic	(AATT)n|Simple_repeat|Simple_repeat	-4072	NM_014969	22911		NM_014969	ENSG00000085433	WDR47	-	WD repeat domain 47	protein-coding
131215	chr2	95076601	95077800	+	0	NA	Intergenic	Intergenic	44357	NM_001321997	64969		NM_031902	ENSG00000144029	MRPS5	MRP-S5|S5mt|uS5m	mitochondrial ribosomal protein S5	protein-coding
77935	chr15	89326321	89326880	+	0	NA	TTS (NR_106824)	TTS (NR_106824)	210	NR_106824	102466983		NR_106824	ENSG00000275101	MIR6766	hsa-mir-6766	microRNA 6766	ncRNA
68707	chr14	90518851	90519250	+	0	NA	Intergenic	Intergenic	-1841	NR_135274	105370619		NR_135274		LOC105370619	-	uncharacterized LOC105370619	ncRNA
39764	chr11	61899071	61900200	+	0	NA	intron (NM_001271686, intron 7 of 8)	intron (NM_001271686, intron 7 of 8)	-8090	NM_021727	3995		NM_021727	ENSG00000221968	FADS3	CYB5RP|LLCDL3	fatty acid desaturase 3	protein-coding
183727	chr5	81023251	81023550	+	0	NA	intron (NM_006909, intron 1 of 26)	intron (NM_006909, intron 1 of 26)	-62493	NR_105015	102524628		NR_105015	ENSG00000251450	RASGRF2-AS1	-	RASGRF2 antisense RNA 1	ncRNA
6742	chr1	30715971	30716230	+	0	NA	exon (NM_002379, exon 5 of 8)	exon (NM_002379, exon 5 of 8)	-2672	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
90826	chr17	2296471	2296630	+	0	NA	intron (NM_017575, intron 4 of 18)	MER1B|DNA|hAT-Charlie	7235	NM_017575	23293		NM_017575	ENSG00000070366	SMG6	C17orf31|EST1A|SMG-6|hEST1A|hSMG5/7a	SMG6 nonsense mediated mRNA decay factor	protein-coding
135452	chr2	161241121	161241380	+	0	NA	intron (NR_110593, intron 3 of 3)	intron (NR_110593, intron 3 of 3)	-3489	NR_110164	100996579		NR_110163	ENSG00000227403	LINC01806	-	long intergenic non-protein coding RNA 1806	ncRNA
24093	chr1	235369721	235370500	+	0	NA	intron (NM_001079515, intron 1 of 16).2	L2a|LINE|L2	2683	NM_001287801	6905		NM_003193	ENSG00000284770	TBCE	HRD|KCS|KCS1|PEAMO|pac2	tubulin folding cofactor E	protein-coding
212685	chr7	129648371	129648730	+	0	NA	intron (NM_001040110, intron 1 of 10)	AluY|SINE|Alu	18472	NM_001040110	4899		NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding
190477	chr5	180290151	180290530	+	0	NA	intron (NM_001364609, intron 1 of 12)	intron (NM_001364609, intron 1 of 12)	935	NM_001364612	5601		NM_002752	ENSG00000050748	MAPK9	JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
141897	chr20	843821	846400	+	0	NA	exon (NM_031424, exon 1 of 1)	exon (NM_031424, exon 1 of 1)	467	NM_031424	83541		NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding
164856	chr3	71056921	71057800	+	0	NA	intron (NM_001244810, intron 7 of 20)	intron (NM_001244810, intron 7 of 20)	7564	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
138285	chr2	203708871	203709480	+	0	NA	intron (NM_001243078, intron 1 of 2)	intron (NM_001243078, intron 1 of 2)	2536	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
153370	chr22	24494551	24495400	+	0	NA	promoter-TSS (NM_016327)	promoter-TSS (NM_016327)	99	NR_028483	646023		NM_001039784	ENSG00000178803	ADORA2A-AS1	C22orf45|hLinfRNA1	ADORA2A antisense RNA 1	ncRNA
237533	chrX	120334171	120334580	+	0	NA	Intergenic	LTR53-int|LTR|ERVL	-22839	NM_017938	55026		NM_017938	ENSG00000125355	TMEM255A	FAM70A	transmembrane protein 255A	protein-coding
204134	chr7	2352821	2353080	+	0	NA	Intergenic	Intergenic	-1136	NM_001362792	8662		NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding
155106	chr22	37606801	37607900	+	0	NA	Intergenic	Intergenic	-1124	NM_001172687	26088		NM_013365	ENSG00000100083	GGA1	-	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding
153845	chr22	30122171	30122330	+	0	NA	intron (NM_152510, intron 10 of 10)	intron (NM_152510, intron 10 of 10)	41786	NM_001329458	150280		NM_152510	ENSG00000176635	HORMAD2	CT46.2	HORMA domain containing 2	protein-coding
47663	chr12	6326371	6326980	+	0	NA	intron (NM_001384598, intron 14 of 15)	intron (NM_001384598, intron 14 of 15)	13542	NM_001144857	55200		NM_018173	ENSG00000008323	PLEKHG6	ARHGEF46|MyoGEF	pleckstrin homology and RhoGEF domain containing G6	protein-coding
88471	chr16	85050671	85050830	+	0	NA	intron (NM_001286566, intron 1 of 11)	intron (NM_001286566, intron 1 of 11)	-12462	NM_001286565	9764		NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding
94248	chr17	28683571	28683930	+	0	NA	exon (NM_001320755, exon 18 of 38)	exon (NM_001320755, exon 18 of 38)	21545	NM_003170	6830		NM_003170	ENSG00000109111	SUPT6H	SPT6|SPT6H|emb-5	SPT6 homolog, histone chaperone and transcription elongation factor	protein-coding
75178	chr15	64716921	64717180	+	0	NA	Intergenic	Intergenic	-13769	NM_002537	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
186063	chr5	134082151	134083050	+	0	NA	Intergenic	L1ME1|LINE|L1	-32081	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
228965	chr9	113511451	113512800	+	0	NA	intron (NM_144488, intron 15 of 25)	MIRc|SINE|MIR	10618	NM_130795	5998		NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G protein signaling 3	protein-coding
171554	chr3	196871471	196871830	+	0	NA	intron (NM_001308045, intron 1 of 8)	AluSx|SINE|Alu	3730	NM_152699	205564		NM_152699	ENSG00000119231	SENP5	-	SUMO specific peptidase 5	protein-coding
62450	chr13	99346351	99346700	+	0	NA	intron (NR_026644, intron 7 of 8)	intron (NR_026644, intron 7 of 8)	-4895	NR_024013	100131561		NR_024013		FKSG29	-	FKSG29	ncRNA
156233	chr22	40384071	40384230	+	0	NA	intron (NM_001350047, intron 1 of 20)	AluJb|SINE|Alu	13556	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
141436	chr2	241007621	241008080	+	0	NA	intron (NM_001080437, intron 1 of 31)	intron (NM_001080437, intron 1 of 31)	9232	NM_001080437	25992		NM_001080437	ENSG00000162804	SNED1	IRE-BP1|SST3|Snep	sushi, nidogen and EGF like domains 1	protein-coding
99645	chr17	50632071	50632580	+	0	NA	Intergenic	Intergenic	-2556	NM_001144070	8714		NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding
20993	chr1	202710001	202710600	+	0	NA	5' UTR (NM_177402, exon 1 of 9)	5' UTR (NM_177402, exon 1 of 9)	154	NM_177402	127833		NM_177402	ENSG00000143858	SYT2	CMS7|CMS7A|CMS7B|MYSPC|SytII	synaptotagmin 2	protein-coding
209838	chr7	89606601	89607000	+	0	NA	Intergenic	Intergenic	-512600	NR_003551	442523		NR_003551	ENSG00000291119	DPY19L2P4	-	DPY19L2 pseudogene 4	pseudo
66056	chr14	58356571	58356730	+	0	NA	intron (NM_023000, intron 17 of 23)	Tigger5b|DNA|TcMar-Tigger	-39280	NM_207377	387990		NM_207377	ENSG00000196860	TOMM20L	UNQ9438	translocase of outer mitochondrial membrane 20 like	protein-coding
20822	chr1	201385371	201385550	+	0	NA	intron (NM_005558, intron 4 of 9)	intron (NM_005558, intron 4 of 9)	-7780	NM_001001432	7139		NM_000364	ENSG00000118194	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T2, cardiac type	protein-coding
77457	chr15	84393451	84393730	+	0	NA	Intergenic	Intergenic	-28929	NR_120379	103171574		NR_120379	ENSG00000259774	LOC103171574	-	uncharacterized LOC103171574	ncRNA
78396	chr15	91940701	91941100	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	86596	NR_135775	28232		NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
165044	chr3	71434851	71434950	+	0	NA	intron (NM_001012505, intron 3 of 6)	intron (NM_001012505, intron 3 of 6)	107189	NR_031697	100302112		NR_031697	ENSG00000221264	MIR1284	MIRN1284|hsa-mir-1284|mir-1284	microRNA 1284	ncRNA
219976	chr8	89781901	89782520	+	0	NA	intron (NM_001375360, intron 6 of 9)	MER44B|DNA|TcMar-Tigger	24394	NM_003821	8767		NM_003821	ENSG00000104312	RIPK2	CARD3|CARDIAK|CCK|GIG30|RICK|RIP2	receptor interacting serine/threonine kinase 2	protein-coding
69078	chr14	92036551	92037030	+	0	NA	intron (NM_004239, intron 1 of 20)	AluJr|SINE|Alu	3269	NM_004239	9321		NM_004239	ENSG00000100815	TRIP11	ACG1A|CEV14|GMAP-210|GMAP210|ODCD|ODCD1|TRIP-11|TRIP230	thyroid hormone receptor interactor 11	protein-coding
71879	chr15	22459621	22459880	+	0	NA	Intergenic	Intergenic	-21724	NR_033350	390535		NM_001012423		GOLGA8EP	GOLGA8E	golgin A8 family member E, pseudogene	pseudo
181538	chr5	43071351	43072000	+	0	NA	intron (NR_102752, intron 2 of 2)	LTR28C|LTR|ERV1	-4236	NR_104651	648987		NR_034085	ENSG00000177738	ANXA2R-OT1	-	ANXA2R overlapping transcript 1	ncRNA
75871	chr15	69715451	69715550	+	0	NA	Intergenic	Intergenic	-119734	NR_026764	414926		NR_026764	ENSG00000245750	LINC00593	C15orf50	long intergenic non-protein coding RNA 593	ncRNA
195242	chr6	36340671	36341400	+	0	NA	Intergenic	Intergenic	-4147	NM_001010903	389384		NM_001010903	ENSG00000189325	BNIP5	C6orf222	BCL2 interacting protein 5	protein-coding
237328	chrX	118498651	118498830	+	0	NA	intron (NM_144658, intron 1 of 52)	intron (NM_144658, intron 1 of 52)	2831	NM_144658	139818		NM_144658	ENSG00000147251	DOCK11	ACG|ADMIDX|ZIZ2|bB128O4.1	dedicator of cytokinesis 11	protein-coding
11533	chr1	90997801	90998400	+	0	NA	intron (NM_032186, intron 1 of 3)	L1P1|LINE|L1	23408	NM_016620	84146		NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding
120304	chr19	43474851	43476000	+	0	NA	exon (NM_198850, exon 16 of 16)	exon (NM_198850, exon 16 of 16)	-9817	NM_014400	27076		NM_014400	ENSG00000124466	LYPD3	C4.4A	LY6/PLAUR domain containing 3	protein-coding
229437	chr9	121371201	121372230	+	0	NA	Intergenic	MER49|LTR|ERV1	-1411	NM_001270527	2040		NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
110351	chr19	1888251	1888800	+	0	NA	Intergenic	Intergenic	-3029	NM_031213	81926		NM_031213	ENSG00000129968	ABHD17A	C19orf27|FAM108A1	abhydrolase domain containing 17A, depalmitoylase	protein-coding
103100	chr17	77343401	77344050	+	0	NA	intron (NM_006640, intron 1 of 10)	MER21C|LTR|ERVL	24210	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
120031	chr19	41955421	41956000	+	0	NA	TTS (NM_006423)	TTS (NM_006423)	3611	NM_006423	10567		NM_006423	ENSG00000105404	RABAC1	PRA1|PRAF1|YIP3	Rab acceptor 1	protein-coding
182358	chr5	59813671	59813930	+	0	NA	intron (NM_001364600, intron 3 of 7)	intron (NM_001364600, intron 3 of 7)	-44952	NM_001197218	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
87608	chr16	74364471	74364830	+	0	NA	intron (NR_026950, intron 1 of 14)	AluJr|SINE|Alu	3605	NR_026950	283922		NR_026950	ENSG00000290890	PDPR2P	-	pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene	pseudo
116129	chr19	17330071	17330850	+	0	NA	exon (NM_020959, exon 9 of 18)	exon (NM_020959, exon 9 of 18)	4395	NM_020959	57719		NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
28641	chr10	59819621	59819920	+	0	NA	intron (NM_005436, intron 3 of 8)	intron (NM_005436, intron 3 of 8)	-66315	NM_001304732	100507027		NM_001304731	ENSG00000227877	MRLN	LINC00948|Linc-RAM|M1|MLN|MUSER1	myoregulin	protein-coding
12505	chr1	108080511	108081080	+	0	NA	Intergenic	L2b|LINE|L2	112040	NM_213651	29957		NM_013386	ENSG00000085491	SLC25A24	APC1|SCAMC-1|SCAMC1	solute carrier family 25 member 24	protein-coding
5244	chr1	25015501	25015980	+	0	NA	Intergenic	Intergenic	-7763	NR_039623	100616365		NR_039623	ENSG00000264371	MIR4425	-	microRNA 4425	ncRNA
73882	chr15	50421951	50422450	+	0	NA	Intergenic	Intergenic	-2205	NM_001283049	9101		NM_005154	ENSG00000138592	USP8	HumORF8|PITA4|SPG59|UBPY	ubiquitin specific peptidase 8	protein-coding
203606	chr7	942471	942850	+	0	NA	intron (NM_001284308, intron 1 of 10)	intron (NM_001284308, intron 1 of 10)	3156	NM_001284309	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
105376	chr17	82701401	82701750	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2877	NM_006822	10966		NM_006822	ENSG00000141542	RAB40B	RAR|SEC4L	RAB40B, member RAS oncogene family	protein-coding
147124	chr20	54096671	54097080	+	0	NA	Intergenic	Intergenic	-26110	NM_003657	8537		NM_003657	ENSG00000064787	BCAS1	AIBC1|NABC1|PMES-2	brain enriched myelin associated protein 1	protein-coding
136432	chr2	176553701	176553930	+	0	NA	Intergenic	Intergenic	47237	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
172001	chr4	957151	957900	+	0	NA	intron (NM_032326, intron 10 of 10)	intron (NM_032326, intron 10 of 10)	16044	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
61268	chr13	50081601	50083400	+	0	NA	promoter-TSS (NR_152569)	promoter-TSS (NR_152569)	331	NR_109974	10301		NM_005887	ENSG00000176124	DLEU1	BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6	deleted in lymphocytic leukemia 1	ncRNA
227639	chr9	92948751	92949050	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	1377	NM_001083536	89846		NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
14481	chr1	144526751	144527250	+	0	NA	Intergenic	AluJo|SINE|Alu	24943	NR_145576	6063		NR_145576	ENSG00000278099	RNVU1-2A	RNU1-12P|RNU1P2|RNVU1.2a|U1P2A|vU1.2a	RNA, variant U1 small nuclear 2A	snRNA
164364	chr3	58167271	58167650	+	0	NA	intron (NR_135534, intron 1 of 1)	intron (NR_135534, intron 1 of 1)	3175	NR_135534	105377105		NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA
144918	chr20	36971571	36971930	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	-20042	NM_001363733	25939		NM_015474	ENSG00000101347	SAMHD1	CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein-coding
148058	chr20	63254471	63254630	+	0	NA	promoter-TSS (NM_152864)	promoter-TSS (NM_152864)	-87	NM_152864	128414		NM_152864	ENSG00000101198	NKAIN4	C20orf58|FAM77A|bA261N11.2	sodium/potassium transporting ATPase interacting 4	protein-coding
172334	chr4	1691601	1692000	+	0	NA	TTS (NM_001306074)	TTS (NM_001306074)	-7487	NM_001174070	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
203956	chr7	1557101	1557530	+	0	NA	Intergenic	Intergenic	-1110	NM_001097620	202915		NM_152689	ENSG00000164855	TMEM184A	SDMG1|SLC51C1	transmembrane protein 184A	protein-coding
167205	chr3	128413521	128413930	+	0	NA	Intergenic	Intergenic	-49869	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
8199	chr1	39578571	39578730	+	0	NA	Intergenic	AluSx|SINE|Alu	-1860	NM_003819	8761		NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding
93624	chr17	19160271	19160630	+	0	NA	intron (NR_160286, intron 1 of 3).2	intron (NR_160286, intron 1 of 3).2	2174	NR_160285	79999		NM_024934		GRAPL-AS1	-	GRAPL antisense RNA 1	ncRNA
181323	chr5	40382001	40382600	+	0	NA	Intergenic	Intergenic	-297615	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
47565	chr12	4322901	4323330	+	0	NA	intron (NM_020375, intron 1 of 5)	AluJb|SINE|Alu	1902	NM_020375	57103		NM_020375	ENSG00000078237	TIGAR	C12orf5|FR2BP	TP53 induced glycolysis regulatory phosphatase	protein-coding
81417	chr16	8675211	8675600	+	0	NA	intron (NM_020686, intron 1 of 15)	intron (NM_020686, intron 1 of 15)	788	NM_020686	18		NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
23931	chr1	235092621	235093050	+	0	NA	Intergenic	AluSp|SINE|Alu	-23017	NR_027454	731656		NR_027454	ENSG00000280587	LINC01348	-	long intergenic non-protein coding RNA 1348	ncRNA
139045	chr2	218660951	218661250	+	0	NA	exon (NM_001320717, exon 3 of 9)	exon (NM_001320717, exon 3 of 9)	1417	NM_001371443	617		NM_004328	ENSG00000074582	BCS1L	BCS|BCS1|BJS|FLNMS|GRACILE|Hs.6719|MC3DN1|PTD|h-BCS|h-BCS1	BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone	protein-coding
222386	chr8	133885751	133886430	+	0	NA	promoter-TSS (NR_125424)	promoter-TSS (NR_125424)	-406	NR_125424	101927822		NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
41841	chr11	67117421	67119860	+	0	NA	promoter-TSS (NR_027473)	promoter-TSS (NR_027473)	-292	NR_160735	107984341		NR_160735		LOC107984341	-	uncharacterized LOC107984341	ncRNA
45849	chr11	119387071	119387230	+	0	NA	intron (NR_034160, intron 1 of 3)	L2|LINE|L2	5372	NR_034160	100499227		NR_034160		USP2-AS1	THY1-AS1|gLINC	USP2 antisense RNA 1	ncRNA
74577	chr15	60549521	60550180	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	42676	NM_134262	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
62896	chr13	110812871	110813230	+	0	NA	promoter-TSS (NR_135280)	promoter-TSS (NR_135280)	34	NR_135280	283486		NR_135280	ENSG00000259831	LINC00567	-	long intergenic non-protein coding RNA 567	ncRNA
44876	chr11	114260871	114261350	+	0	NA	intron (NR_164073, intron 1 of 3)	intron (NR_164073, intron 1 of 3)	342	NR_164073	4837		NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding
85350	chr16	50204621	50205130	+	0	NA	intron (NM_001040284, intron 2 of 12)	intron (NM_001040284, intron 2 of 12)	51569	NM_001365324	64282		NM_022447	ENSG00000121274	TENT4B	PAPD5|TRF4-2|TUT3	terminal nucleotidyltransferase 4B	protein-coding
181247	chr5	39204951	39205050	+	0	NA	intron (NM_001243093, intron 1 of 18)	intron (NM_001243093, intron 1 of 18)	14563	NM_199335	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
117302	chr19	19493971	19494130	+	0	NA	intron (NM_001384539, intron 4 of 10)	intron (NM_001384539, intron 4 of 10)	21498	NM_032037	83983		NM_032037	ENSG00000178093	TSSK6	CT72|FKSG82|SSTK|TSSK4	testis specific serine kinase 6	protein-coding
224505	chr9	19052071	19052430	+	0	NA	TTS (NM_001270890)	TTS (NM_001270890)	2823	NM_006570	10670		NM_006570	ENSG00000155876	RRAGA	FIP-1|FIP1|RAGA	Ras related GTP binding A	protein-coding
155253	chr22	37977421	37977680	+	0	NA	intron (NM_006941, intron 3 of 3)	AluY|SINE|Alu	7005	NM_006941	6663		NM_006941	ENSG00000100146	SOX10	DOM|PCWH|SOX-10|WS2E|WS4|WS4C	SRY-box transcription factor 10	protein-coding
99543	chr17	50365501	50365700	+	0	NA	Intergenic	Intergenic	7584	NM_016504	51264		NM_016504	ENSG00000108826	MRPL27	L27mt|bL27m	mitochondrial ribosomal protein L27	protein-coding
47590	chr12	4825501	4826100	+	0	NA	intron (NM_002235, intron 1 of 1)	intron (NM_002235, intron 1 of 1)	16624	NM_002235	3742		NM_002235	ENSG00000151079	KCNA6	HBK2|KV1.6|PPP1R96	potassium voltage-gated channel subfamily A member 6	protein-coding
193550	chr6	30613901	30614100	+	0	NA	intron (NM_001376195, intron 2 of 19).6	intron (NM_001376195, intron 2 of 19).6	3243	NR_164780	5514		NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding
189332	chr5	172169501	172169750	+	0	NA	intron (NM_005990, intron 1 of 18)	intron (NM_005990, intron 1 of 18)	18599	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
229896	chr9	126522921	126523180	+	0	NA	Intergenic	Intergenic	-90878	NM_002316	4010		NM_002316	ENSG00000136944	LMX1B	FSGS10|LMX1.2|NPS1	LIM homeobox transcription factor 1 beta	protein-coding
13364	chr1	113878871	113879480	+	0	NA	3' UTR (NM_001010922, exon 4 of 4)	3' UTR (NM_001010922, exon 4 of 4)	-7416	NM_001193431	26191		NM_012411	ENSG00000134242	PTPN22	LYP|LYP1|LYP2|PEP|PTPN22.5|PTPN22.6|PTPN8	protein tyrosine phosphatase non-receptor type 22	protein-coding
172280	chr4	1547571	1548030	+	0	NA	Intergenic	Intergenic	136191	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
41148	chr11	65594771	65594930	+	0	NA	intron (NM_033347, intron 1 of 2)	AluSz|SINE|Alu	950	NM_033347	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
64586	chr14	24882251	24882350	+	0	NA	intron (NM_001351941, intron 3 of 6)	AluYa5|SINE|Alu	166700	NM_001304477	29091		NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding
208935	chr7	74092601	74093390	+	0	NA	promoter-TSS (NM_001204426)	promoter-TSS (NM_001204426)	-222	NM_001204426	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
63138	chr13	113493151	113493830	+	0	NA	intron (NM_001349745, intron 1 of 10)	intron (NM_001349745, intron 1 of 10)	2469	NR_146221	55002		NM_017905	ENSG00000150403	TMCO3	C13orf11	transmembrane and coiled-coil domains 3	protein-coding
33207	chr10	113953621	113953950	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-90081	NM_000684	153		NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|FNSS2|RHR	adrenoceptor beta 1	protein-coding
176795	chr4	102518401	102519150	+	0	NA	intron (NM_001382625, intron 2 of 24)	intron (NM_001382625, intron 2 of 24)	-16289	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
162186	chr3	46999621	46999930	+	0	NA	intron (NM_001365116, intron 25 of 52)	intron (NM_001365116, intron 25 of 52)	-11767	NR_024046	100129354		NR_024046		NRADDP	-	neurotrophin receptor associated death domain, pseudogene	pseudo
209225	chr7	75637901	75638100	+	0	NA	intron (NM_001243198, intron 1 of 28)	(CA)n|Simple_repeat|Simple_repeat	1242	NM_001382444	3092		NM_005338	ENSG00000127946	HIP1	HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma	huntingtin interacting protein 1	protein-coding
58093	chr12	124681451	124681630	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-113928	NM_001206654	9612		NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
9971	chr1	54813101	54813580	+	0	NA	intron (NM_001110533, intron 6 of 9)	L1MC1|LINE|L1	7277	NM_001110533	163747		NM_152607	ENSG00000162398	CIMAP2	C1orf177|LEM|LEXM	ciliary microtubule associated protein 2	protein-coding
194060	chr6	31858921	31859380	+	0	NA	3' UTR (NM_000434, exon 6 of 6).3	3' UTR (NM_000434, exon 6 of 6).3	3671	NM_000434	4758		NM_000434	ENSG00000204386	NEU1	NANH|NEU|SIAL1	neuraminidase 1	protein-coding
77419	chr15	83456251	83456350	+	0	NA	intron (NM_001324182, intron 1 of 9)	L1HS|LINE|L1	8959	NM_003027	6457		NM_003027	ENSG00000140600	SH3GL3	CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13	SH3 domain containing GRB2 like 3, endophilin A3	protein-coding
37229	chr11	14470771	14470930	+	0	NA	intron (NM_001144061, intron 14 of 21)	L1MEf|LINE|L1	28961	NM_001144061	1315		NM_016451	ENSG00000129083	COPB1	BARMACS|COPB	COPI coat complex subunit beta 1	protein-coding
128442	chr2	55590771	55591180	+	0	NA	intron (NM_020463, intron 4 of 14)	intron (NM_020463, intron 4 of 14)	26647	NM_001122964	57223		NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding
102441	chr17	75684601	75685000	+	0	NA	intron (NR_126036, intron 3 of 9)	intron (NR_126036, intron 3 of 9)	17462	NM_013260	29115		NM_013260	ENSG00000161526	SAP30BP	HCNGP|HTRG|HTRP	SAP30 binding protein	protein-coding
93977	chr17	21970151	21970680	+	0	NA	Intergenic	(ATGGA)n|Simple_repeat|Simple_repeat	-232580	NR_144546	23666		NR_144546	ENSG00000290919	UBBP4	-	ubiquitin B pseudogene 4	pseudo
181029	chr5	35879051	35880030	+	0	NA	TTS (NR_120485)	TTS (NR_120485)	22649	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
96113	chr17	39639221	39639750	+	0	NA	intron (NM_001165938, intron 1 of 13)	intron (NM_001165938, intron 1 of 13)	2341	NM_006804	10948		NM_006804	ENSG00000131748	STARD3	CAB1|MLN64|es64	StAR related lipid transfer domain containing 3	protein-coding
107512	chr18	47945471	47945730	+	0	NA	Intergenic	Intergenic	-14454	NM_001135937	4087		NM_005901	ENSG00000175387	SMAD2	CHTD8|JV18|JV18-1|LDS6|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
89951	chr16	89759751	89760300	+	0	NA	intron (NM_001286167, intron 29 of 42)	intron (NM_001286167, intron 29 of 42)	38488	NR_110129	92822		NM_152287	ENSG00000158805	ZNF276	CENP-Z|CENPZ|ZADT|ZFP276|ZNF477	zinc finger protein 276	protein-coding
80339	chr16	2468551	2469680	+	0	NA	promoter-TSS (NR_135198)	promoter-TSS (NR_135198)	-902	NR_135198	729652		NR_135198	ENSG00000259895	TEDC2-AS1	-	TEDC2 antisense RNA 1	ncRNA
191509	chr6	11284301	11284800	+	0	NA	intron (NM_001142393, intron 2 of 7)	AluY|SINE|Alu	-51868	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
62351	chr13	99199101	99199530	+	0	NA	intron (NR_036532, intron 1 of 1)	AluSx3|SINE|Alu	1440	NR_036532	100289373		NR_036531	ENSG00000228889	UBAC2-AS1	-	UBAC2 antisense RNA 1	ncRNA
63831	chr14	21497251	21497900	+	0	NA	TTS (NM_019852)	TTS (NM_019852)	13765	NM_019852	56339		NM_019852	ENSG00000165819	METTL3	IME4|M6A|MT-A70|Spo8|hMETTL3	methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit	protein-coding
227701	chr9	93022851	93023630	+	0	NA	intron (NM_001369951, intron 14 of 17)	intron (NM_001369951, intron 14 of 17)	-8296	NR_121565	101927954		NR_121565		LOC101927954	-	uncharacterized LOC101927954	ncRNA
190111	chr5	177942651	177943280	+	0	NA	intron (NR_149047, intron 1 of 3)	intron (NR_149047, intron 1 of 3)	3438	NR_149047	100128340		NR_149047		LOC100128340	-	uncharacterized LOC100128340	ncRNA
142244	chr20	3150101	3150300	+	0	NA	intron (NM_021826, intron 1 of 1)	intron (NM_021826, intron 1 of 1)	9665	NM_014948	22888		NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding
217754	chr8	30911871	30912450	+	0	NA	intron (NM_001350162, intron 1 of 10)	CpG	848	NM_001350162	56154		NM_001350162	ENSG00000133863	TEX15	CT42|SPGF25	testis expressed 15, meiosis and synapsis associated	protein-coding
229868	chr9	126472551	126473200	+	0	NA	intron (NM_033446, intron 7 of 9)	intron (NM_033446, intron 7 of 9)	-62371	NR_045006	641373		NR_045006		NRON	NCRNA00194	non-coding repressor of NFAT	ncRNA
88370	chr16	84592871	84593030	+	0	NA	intron (NM_021149, intron 2 of 3)	intron (NM_021149, intron 2 of 3)	25128	NM_021149	23406		NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding
92781	chr17	15752171	15752330	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-12453	NR_033865	644694		NR_033865		CDRT15P2	CDRT15L1	CDRT15 pseudogene 2	pseudo
22996	chr1	226111601	226112050	+	0	NA	Intergenic	Intergenic	28250	NR_146920	105373113		NR_146920		LINC01703	lncPARP1	long intergenic non-protein coding RNA 1703	ncRNA
235841	chrX	49878171	49878330	+	0	NA	non-coding (NR_026742, exon 2 of 2)	non-coding (NR_026742, exon 2 of 2)	1106	NR_026742	158572		NM_001025449	ENSG00000234390	USP27X-DT	USP27X-AS1	USP27X divergent transcript	ncRNA
204182	chr7	2472751	2473300	+	0	NA	Intergenic	Intergenic	3358	NM_001291784	402635		NM_001291784	ENSG00000275572	GRIFIN	-	galectin-related inter-fiber protein	protein-coding
216144	chr8	11494401	11494600	+	0	NA	5' UTR (NM_001330465, exon 1 of 12).2	5' UTR (NM_001330465, exon 1 of 12).2	113	NM_001330465	640		NM_001715	ENSG00000136573	BLK	MODY11	BLK proto-oncogene, Src family tyrosine kinase	protein-coding
75962	chr15	70480001	70481100	+	0	NA	Intergenic	Intergenic	25378	NR_146562	105370880		NR_146562	ENSG00000259473	LINC02205	-	long intergenic non-protein coding RNA 2205	ncRNA
86746	chr16	67647801	67648750	+	0	NA	exon (NM_001013838, exon 14 of 38)	exon (NM_001013838, exon 14 of 38)	3131	NM_001013838	146206		NM_001013838	ENSG00000159753	CARMIL2	CARMIL2b|IMD58|LRRC16C|RLTPR	capping protein regulator and myosin 1 linker 2	protein-coding
101159	chr17	65096101	65096500	+	0	NA	Intergenic	L1PA8A|LINE|L1	-4512	NR_110801	100507002		NR_110801		LOC100507002	-	uncharacterized LOC100507002	ncRNA
231157	chr9	129878321	129878750	+	0	NA	intron (NM_001110303, intron 23 of 25)	intron (NM_001110303, intron 23 of 25)	8930	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
156914	chr22	42274321	42274580	+	0	NA	non-coding (NR_036498, exon 2 of 2)	non-coding (NR_036498, exon 2 of 2)	-3797	NM_181492	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
133860	chr2	128321621	128322650	+	0	NA	Intergenic	CpG	-3267	NM_004807	9394		NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding
116994	chr19	18893951	18894600	+	0	NA	intron (NM_001290265, intron 1 of 5)	intron (NM_001290265, intron 1 of 5)	1883	NM_021267	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
122216	chr19	48969551	48970250	+	0	NA	intron (NM_002103, intron 14 of 15)	intron (NM_002103, intron 14 of 15)	4591	NM_000146	2512		NM_000146	ENSG00000087086	FTL	FTL1|LFTD|NBIA3	ferritin light chain	protein-coding
10606	chr1	67607801	67608000	+	0	NA	Intergenic	L2a|LINE|L2	-77301	NM_001924	1647		NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
217903	chr8	37892951	37893200	+	0	NA	intron (NM_025151, intron 1 of 4)	AluSx|SINE|Alu	6422	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
13928	chr1	120144171	120144350	+	0	NA	Intergenic	L2|LINE|L2	32260	NM_004892	9554		NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein	protein-coding
4803	chr1	23592301	23593030	+	0	NA	Intergenic	MIRb|SINE|MIR	-33164	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
110678	chr19	2268251	2268430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1146	NM_001301020	4946		NM_004152	ENSG00000104904	OAZ1	AZ1|AZI|OAZ	ornithine decarboxylase antizyme 1	protein-coding
224164	chr9	4987401	4988230	+	0	NA	intron (NM_001322199, intron 2 of 24)	MIRb|SINE|MIR	2543	NM_004972	3717		NM_004972	ENSG00000096968	JAK2	JTK10	Janus kinase 2	protein-coding
126691	chr2	30147601	30148650	+	0	NA	intron (NM_016061, intron 1 of 2)	intron (NM_016061, intron 1 of 2)	1118	NM_001127400	51646		NM_016061	ENSG00000119801	YPEL5	CGI-127	yippee like 5	protein-coding
119546	chr19	40596371	40597500	+	0	NA	promoter-TSS (NM_001042544)	promoter-TSS (NM_001042544)	-300	NM_001042544	8425		NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding
147999	chr20	63029751	63030050	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	7128	NR_028295	100144596		NM_022099		LINC00029	C20orf51|NCRNA00029	long intergenic non-protein coding RNA 29	ncRNA
217653	chr8	30079821	30080500	+	0	NA	intron (NM_016127, intron 1 of 5)	L2a|LINE|L2	2904	NM_016127	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
153272	chr22	24147751	24148780	+	0	NA	intron (NM_012295, intron 29 of 36)	intron (NM_012295, intron 29 of 36)	-33222	NM_019601	56241		NM_019601	ENSG00000099994	SUSD2	BK65A6.2|W5C5	sushi domain containing 2	protein-coding
92823	chr17	16041571	16041730	+	0	NA	intron (NM_001190440, intron 41 of 44)	AluSq2|SINE|Alu	41826	NM_017775	54902		NM_017775	ENSG00000011295	TTC19	2010204O13Rik|MC3DN2	tetratricopeptide repeat domain 19	protein-coding
220752	chr8	102289571	102289730	+	0	NA	intron (NM_001282873, intron 34 of 58)	intron (NM_001282873, intron 34 of 58)	50199	NR_125415	101927221		NR_125415		UBR5-DT	UBR5-AS1	UBR5 divergent transcript	ncRNA
182671	chr5	67301251	67301550	+	0	NA	Intergenic	Intergenic	-104601	NM_005582	4064		NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding
92992	chr17	17172771	17173780	+	0	NA	intron (NM_015134, intron 17 of 22)	intron (NM_015134, intron 17 of 22)	33058	NM_178836	201164		NM_178836	ENSG00000179598	PLD6	ZUC	phospholipase D family member 6	protein-coding
89248	chr16	88647851	88648580	+	0	NA	intron (NM_000101, intron 1 of 5)	intron (NM_000101, intron 1 of 5)	2838	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
178488	chr4	149980801	149981040	+	0	NA	Intergenic	Intergenic	-97525	NM_001040261	166614		NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
151292	chr21	45517721	45517980	+	0	NA	intron (NM_194255, intron 5 of 5)	L1MD1|LINE|L1	16906	NM_001205207	6573		NM_003056	ENSG00000173638	SLC19A1	CHMD|FOLT|IFC-1|IFC1|IMD114|MEGAF|REFC|RFC|RFC1|RFT-1|hRFC|hSLC19A1	solute carrier family 19 member 1	protein-coding
111212	chr19	3482651	3483480	+	0	NA	Intergenic	CpG	-2540	NM_001136503	284422		NM_001136503	ENSG00000095932	SMIM24	C19orf77|HSPC323|MARDI	small integral membrane protein 24	protein-coding
171685	chr3	197750501	197752150	+	0	NA	intron (NR_027840, intron 1 of 8)	intron (NR_027840, intron 1 of 8)	1078	NR_027840	84248		NM_032288	ENSG00000122068	FYTTD1	UIF	forty-two-three domain containing 1	protein-coding
17872	chr1	159991621	159991980	+	0	NA	Intergenic	MER57B2|LTR|ERV1	30576	NR_038849	100505633		NR_038849	ENSG00000224259	LINC01133	-	long intergenic non-protein coding RNA 1133	ncRNA
174005	chr4	26355851	26356330	+	0	NA	intron (NM_001374403, intron 1 of 11)	LTR86A2|LTR|ERVL	12950	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
175403	chr4	70842051	70842600	+	0	NA	Intergenic	Intergenic	-2435	NM_002092	2926		NM_002092	ENSG00000132463	GRSF1	-	G-rich RNA sequence binding factor 1	protein-coding
111983	chr19	4895301	4895750	+	0	NA	intron (NM_001367189, intron 3 of 3)	intron (NM_001367189, intron 3 of 3)	7371	NM_001367189	645432		NM_001080523	ENSG00000205784	ARRDC5	-	arrestin domain containing 5	protein-coding
213637	chr7	139669421	139669680	+	0	NA	intron (NM_022740, intron 2 of 14)	intron (NM_022740, intron 2 of 14)	108448	NM_022740	28996		NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding
45413	chr11	118355371	118356180	+	0	NA	TTS (NM_000073)	TTS (NM_000073)	-3825	NM_001204077	9354		NM_004788	ENSG00000110344	UBE4A	E4|NEDHMS|UBOX2|UFD2	ubiquitination factor E4A	protein-coding
68531	chr14	89165021	89165680	+	0	NA	intron (NM_001085471, intron 6 of 6)	intron (NM_001085471, intron 6 of 6)	251883	NM_005197	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
157358	chr22	44693301	44693880	+	0	NA	intron (NM_001198721, intron 2 of 9)	MLT1C|LTR|ERVL-MaLR	-8608	NM_181334	553158		NM_181334	ENSG00000248405	PRR5-ARHGAP8	-	PRR5-ARHGAP8 readthrough	protein-coding
124333	chr19	58218921	58219380	+	0	NA	Intergenic	AluJo|SINE|Alu	-9531	NM_001320792	27300		NM_014480	ENSG00000198131	ZNF544	-	zinc finger protein 544	protein-coding
59729	chr13	29847071	29847230	+	0	NA	intron (NM_007106, intron 1 of 4)	intron (NM_007106, intron 1 of 4)	3467	NM_007106	5412		NM_007106	ENSG00000122042	UBL3	HCG-1|PNSC1	ubiquitin like 3	protein-coding
171418	chr3	196219151	196220450	+	0	NA	intron (NM_152672, intron 2 of 8)	MER20|DNA|hAT-Charlie	3266	NM_152672	200931		NM_152672	ENSG00000163959	SLC51A	OSTA|OSTalpha|PFIC6|SLC51A1	solute carrier family 51 member A	protein-coding
118282	chr19	35282051	35282780	+	0	NA	promoter-TSS (NM_021175)	promoter-TSS (NM_021175)	-113	NM_021175	57817		NM_021175	ENSG00000105697	HAMP	HEPC|HFE2B|LEAP1|PLTR	hepcidin antimicrobial peptide	protein-coding
178615	chr4	152098671	152099130	+	0	NA	Intergenic	Intergenic	-1853	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
84645	chr16	30722321	30723080	+	0	NA	exon (NM_006662, exon 23 of 34)	exon (NM_006662, exon 23 of 34)	12163	NR_002966	677813		NR_002966	ENSG00000206755	SNORA30	ACA30|SNORA30A	small nucleolar RNA, H/ACA box 30	snoRNA
34537	chr10	132914501	132914980	+	0	NA	intron (NM_001200049, intron 17 of 57)	intron (NM_001200049, intron 17 of 57)	27830	NM_001200049	54777		NM_017609	ENSG00000171811	CFAP46	C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3	cilia and flagella associated protein 46	protein-coding
55455	chr12	104637351	104637650	+	0	NA	intron (NM_018413, intron 2 of 2)	L1PA4|LINE|L1	45867	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
196401	chr6	43307671	43309180	+	0	NA	intron (NM_206922, intron 1 of 7)	intron (NM_206922, intron 1 of 7)	401	NM_001366068	401262		NM_206922	ENSG00000146215	CRIP3	CRP-3|TLP|TLP-A|h6LIMo	cysteine rich protein 3	protein-coding
232682	chr9	136520251	136520350	+	0	NA	promoter-TSS (NR_039820)	promoter-TSS (NR_039820)	-674	NR_039820	100616242		NR_039820	ENSG00000263403	MIR4673	-	microRNA 4673	ncRNA
158993	chr3	10307371	10307730	+	0	NA	intron (NM_183352, intron 5 of 8)	THE1B|LTR|ERVL-MaLR	13491	NM_001136232	6396		NM_030673	ENSG00000157020	SEC13	D3S1231E|SEC13L1|SEC13R|npp-20	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding
118913	chr19	38724521	38725300	+	0	NA	intron (NM_004924, intron 16 of 20)	AluJb|SINE|Alu	19564	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
114053	chr19	11023851	11024350	+	0	NA	intron (NR_164683, intron 21 of 35)	intron (NR_164683, intron 21 of 35)	39976	NM_001128846	6597		NM_003072	ENSG00000127616	SMARCA4	BAF190|BAF190A|BRG1|CSS4|MRD16|OTSC12|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding
115455	chr19	15343451	15343750	+	0	NA	Intergenic	AluJb|SINE|Alu	-11061	NM_001379291	23476		NM_014299	ENSG00000141867	BRD4	CAP|CDLS6|FSHRG4|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding
173154	chr4	6681221	6681900	+	0	NA	Intergenic	Intergenic	7485	NR_015433								
194119	chr6	31961301	31961980	+	0	NA	exon (NM_006929, exon 9 of 28).3	exon (NM_006929, exon 9 of 28).3	2465	NM_006929	6499		NM_006929	ENSG00000204351	SKIC2	170A|DDX13|HLP|SKI2|SKI2W|SKIV2|SKIV2L|SKIV2L1|THES2	SKI2 subunit of superkiller complex	protein-coding
102712	chr17	76177421	76177680	+	0	NA	intron (NM_052916, intron 2 of 18)	MER52D|LTR|ERV1	-36305	NM_001454	2302		NM_001454	ENSG00000129654	FOXJ1	CILD43|FKHL13|HFH-4|HFH4	forkhead box J1	protein-coding
128711	chr2	61693521	61693950	+	0	NA	Intergenic	AluJo|SINE|Alu	-155379	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
55937	chr12	109934071	109934230	+	0	NA	intron (NM_057170, intron 16 of 17)	intron (NM_057170, intron 16 of 17)	33573	NM_032300	84260		NM_032300	ENSG00000139437	TCHP	TpMs	trichoplein keratin filament binding	protein-coding
168385	chr3	141949251	141949680	+	0	NA	3' UTR (NM_001178142, exon 8 of 8)	3' UTR (NM_001178142, exon 8 of 8)	50906	NM_001178140	7029		NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding
197166	chr6	59601971	59602130	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1640604	NR_125728	106660612		NR_125727	ENSG00000290555	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
27555	chr10	32343051	32343700	+	0	NA	intron (NR_168508, intron 1 of 12)	AluSq|SINE|Alu	3783	NM_001272004	80314		NM_025209	ENSG00000120616	EPC1	Epl1	enhancer of polycomb homolog 1	protein-coding
26104	chr10	13312651	13312950	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12670	NM_001323083	5264		NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding
105349	chr17	82635851	82635950	+	0	NA	intron (NM_019613, intron 2 of 9)	AluSp|SINE|Alu	12544	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
161315	chr3	39408601	39409450	+	0	NA	TTS (NR_002325)	TTS (NR_002325)	634	NR_002325	574040		NR_002325	ENSG00000206760	SNORA6	ACA6	small nucleolar RNA, H/ACA box 6	snoRNA
215271	chr7	157008401	157008600	+	0	NA	intron (NM_005515, intron 1 of 2)	intron (NM_005515, intron 1 of 2)	935	NM_001165255	3110		NM_005515	ENSG00000130675	MNX1	HB9|HLXB9|HOXHB9|SCRA1	motor neuron and pancreas homeobox 1	protein-coding
235347	chrX	44264721	44265180	+	0	NA	intron (NM_025184, intron 3 of 14)	intron (NM_025184, intron 3 of 14)	78722	NM_025184	80258		NM_025184	ENSG00000183690	EFHC2	MRX74|dJ1158H2.1	EF-hand domain containing 2	protein-coding
121781	chr19	47777971	47779550	+	0	NA	promoter-TSS (NM_003009)	promoter-TSS (NM_003009)	57	NM_003009	6415		NM_003009	ENSG00000178980	SELENOW	SEPW1|selW	selenoprotein W	protein-coding
144692	chr20	36458801	36459350	+	0	NA	intron (NM_001365621, intron 7 of 12)	intron (NM_001365621, intron 7 of 12)	-2393	NM_001042486	22839		NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding
80137	chr16	2083751	2084050	+	0	NA	intron (NM_001370404, intron 32 of 40)	intron (NM_001370404, intron 32 of 40)	6384	NR_030646	100188847		NR_030646	ENSG00000221656	MIR1225	MIRN1225	microRNA 1225	ncRNA
183138	chr5	74974351	74975200	+	0	NA	Intergenic	Intergenic	77783	NM_001366737	51301		NM_016591	ENSG00000176928	GCNT4	C2GNT3|LINC01336	glucosaminyl (N-acetyl) transferase 4	protein-coding
18436	chr1	161484501	161484980	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	-20717	NM_021642	2212		NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|FcgammaRIIa|IGFR2	Fc gamma receptor IIa	protein-coding
200256	chr6	132490571	132491100	+	0	NA	intron (NR_137169, intron 2 of 8)	intron (NR_137169, intron 2 of 8)	21948	NM_001326578	8417		NM_003569	ENSG00000079950	STX7	-	syntaxin 7	protein-coding
163862	chr3	52492771	52493550	+	0	NA	TTS (NM_007184)	TTS (NM_007184)	-2178	NM_015136	23166		NM_015136	ENSG00000010327	STAB1	CLEVER-1|FEEL-1|FEEL1|FELE-1|FEX1|HRFT|SCARH2|STAB-1	stabilin 1	protein-coding
208502	chr7	69594771	69595350	+	0	NA	non-coding (NR_108105, exon 2 of 2)	non-coding (NR_108105, exon 2 of 2)	2564	NR_148926	100507468		NR_108105	ENSG00000234215	CT66	-	cancer/testis associated transcript 66	ncRNA
222501	chr8	140507451	140507750	+	0	NA	Intergenic	Intergenic	-3722	NM_017444	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
212554	chr7	128868101	128868300	+	0	NA	intron (NM_001195150, intron 1 of 1)	L2|LINE|L2	1870	NM_001195150	100130705		NM_001195150	ENSG00000272899	SPMIP1	ATP6V1FNB	sperm microtubule inner protein 1	protein-coding
235223	chrX	41372251	41372750	+	0	NA	Intergenic	L1MD|LINE|L1	38334	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
197198	chr6	63589101	63589500	+	0	NA	Intergenic	AluY|SINE|Alu	16820	NR_169596	7803		NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase 4A1	protein-coding
230470	chr9	128211501	128211900	+	0	NA	intron (NM_001374269, intron 1 of 21)	L2c|LINE|L2	-7478	NM_012127	25792		NM_012127	ENSG00000148337	CIZ1	LSFR1|NP94|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding
28010	chr10	43172571	43173050	+	0	NA	intron (NR_135077, intron 7 of 8)	intron (NR_135077, intron 7 of 8)	17913	NM_001319656	55454		NM_018590	ENSG00000169826	CSGALNACT2	CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
78582	chr15	93032851	93033150	+	0	NA	Intergenic	Intergenic	40156	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
91687	chr17	6069021	6069580	+	0	NA	Intergenic	Intergenic	-1314	NM_015253	23302		NM_015253	ENSG00000179314	WSCD1	-	WSC domain containing 1	protein-coding
228185	chr9	97598521	97598990	+	0	NA	intron (NM_001166116, intron 9 of 9)	intron (NM_001166116, intron 9 of 9)	34613	NM_139246	158427		NM_139246	ENSG00000136925	TSTD2	C9orf97	thiosulfate sulfurtransferase like domain containing 2	protein-coding
119579	chr19	40685801	40686200	+	0	NA	intron (NM_001289979, intron 1 of 8)	intron (NM_001289979, intron 1 of 8)	4164	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
166430	chr3	113769571	113769730	+	0	NA	intron (NM_001690, intron 1 of 14)	intron (NM_001690, intron 1 of 14)	22615	NM_001690	523		NM_001690	ENSG00000114573	ATP6V1A	ARCL2D|ATP6A1|ATP6V1A1|DEE93|HO68|IECEE3|VA68|VPP2|Vma1	ATPase H+ transporting V1 subunit A	protein-coding
211382	chr7	105011071	105011350	+	0	NA	non-coding (NR_024586, exon 1 of 1)	non-coding (NR_024586, exon 1 of 1)	2931	NR_024586	100216545		NR_024586		KMT2E-AS1	-	KMT2E antisense RNA 1	ncRNA
31054	chr10	88983001	88983600	+	0	NA	intron (NM_001320855, intron 1 of 8)	intron (NM_001320855, intron 1 of 8)	-7498	NR_028035	355		NM_000043	ENSG00000026103	FAS	ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6	Fas cell surface death receptor	protein-coding
70745	chr14	103390901	103392100	+	0	NA	intron (NM_002376, intron 1 of 15)	L1MC5|LINE|L1	6085	NM_001128918	4140		NM_002376	ENSG00000075413	MARK3	CTAK1|KP78|PAR1A|Par-1a|VIPB	microtubule affinity regulating kinase 3	protein-coding
78318	chr15	90952571	90952730	+	0	NA	intron (NM_001323619, intron 18 of 20)	AluSz|SINE|Alu	-2226	NM_001017919	91433		NM_033544	ENSG00000166965	RCCD1	-	RCC1 domain containing 1	protein-coding
224932	chr9	33003351	33003450	+	0	NA	intron (NM_001369001, intron 1 of 6)	AluSx|SINE|Alu	-1759	NM_001195251	54840		NM_017692	ENSG00000137074	APTX	AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT	aprataxin	protein-coding
46814	chr11	130426701	130426900	+	0	NA	intron (NM_007037, intron 1 of 8)	intron (NM_007037, intron 1 of 8)	1809	NM_007037	11095		NM_007037	ENSG00000134917	ADAMTS8	ADAM-TS8|METH2	ADAM metallopeptidase with thrombospondin type 1 motif 8	protein-coding
31542	chr10	96920701	96920900	+	0	NA	intron (NM_032440, intron 4 of 7)	intron (NM_032440, intron 4 of 7)	87855	NM_032440	84458		NM_015652	ENSG00000196233	LCOR	C10orf12|MLR2	ligand dependent nuclear receptor corepressor	protein-coding
260	chr1	920201	920400	+	0	NA	promoter-TSS (NR_026874)	promoter-TSS (NR_026874)	-608	NR_026874	100130417		NM_175912	ENSG00000223764	LINC02593	-	long intergenic non-protein coding RNA 2593	ncRNA
218312	chr8	42665871	42666230	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-31316	NM_000749	1142		NM_000749	ENSG00000147432	CHRNB3	-	cholinergic receptor nicotinic beta 3 subunit	protein-coding
105043	chr17	82061871	82062530	+	0	NA	intron (NM_022156, intron 5 of 13)	intron (NM_022156, intron 5 of 13)	3604	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
32146	chr10	101291151	101293250	+	0	NA	Intergenic	CpG	-28650	NR_120621	101927419		NR_120621	ENSG00000229649	LINC02681	-	long intergenic non-protein coding RNA 2681	ncRNA
150972	chr21	44325651	44327680	+	0	NA	intron (NM_001002021, intron 24 of 24)	intron (NM_001002021, intron 24 of 24)	11673	NM_001271442	755		NM_004928	ENSG00000160226	CFAP410	C21orf2|LRRC76|RDMS|SMDAX|YF5/A2	cilia and flagella associated protein 410	protein-coding
104445	chr17	81090751	81091550	+	0	NA	intron (NM_001385147, intron 5 of 12)	intron (NM_001385147, intron 5 of 12)	-6461	NM_001385159	10458		NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53|WAML	BAR/IMD domain containing adaptor protein 2	protein-coding
221115	chr8	118101671	118101930	+	0	NA	intron (NM_000127, intron 1 of 10)	intron (NM_000127, intron 1 of 10)	10026	NM_000127	2131		NM_000127	ENSG00000182197	EXT1	EXT|LGCR|LGS|TRPS2|TTV	exostosin glycosyltransferase 1	protein-coding
205324	chr7	12458421	12458780	+	0	NA	Intergenic	Intergenic	-37829	NR_136261	102725191		NM_001386512	ENSG00000226690	C7orf78	-	chromosome 7 open reading frame 78	protein-coding
42124	chr11	67617871	67618030	+	0	NA	Intergenic	L1MA7|LINE|L1	-2286	NR_033791	390213		NR_033791		DOC2GP	-	double C2 domain gamma, pseudogene	pseudo
58323	chr12	131222351	131222900	+	0	NA	Intergenic	(TGTGTG)n|Simple_repeat|Simple_repeat	57614	NR_026670	116437		NR_026670	ENSG00000204603	LINC01257	-	long intergenic non-protein coding RNA 1257	ncRNA
113563	chr19	10254321	10254630	+	0	NA	intron (NM_146387, intron 4 of 9)	L2b|LINE|L2	2261	NM_015956	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
77843	chr15	88652001	88653980	+	0	NA	intron (NM_001303233, intron 3 of 3)	LTR16C|LTR|ERVL	13974	NM_001303236	3669		NM_002201	ENSG00000172183	ISG20	CD25|HEM45	interferon stimulated exonuclease gene 20	protein-coding
157671	chr22	46280601	46281680	+	0	NA	intron (NM_017931, intron 6 of 13)	intron (NM_017931, intron 6 of 13)	13132	NM_017931	55020		NM_017931	ENSG00000075234	TTC38	LL22NC03-5H6.5	tetratricopeptide repeat domain 38	protein-coding
55306	chr12	103632571	103632830	+	0	NA	intron (NM_017564, intron 6 of 68)	LTR41B|LTR|ERVL	45427	NM_017564	55576		NM_017564	ENSG00000136011	STAB2	FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1	stabilin 2	protein-coding
46037	chr11	122674151	122674650	+	0	NA	intron (NM_032873, intron 1 of 13)	AluY|SINE|Alu	18678	NM_032873	84959		NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding
184675	chr5	108260451	108260900	+	0	NA	intron (NM_001163315, intron 4 of 8)	intron (NM_001163315, intron 4 of 8)	121423	NM_001163315	64839		NM_022824	ENSG00000145743	FBXL17	FBXO13|Fbl17|Fbx13	F-box and leucine rich repeat protein 17	protein-coding
58475	chr12	132146371	132146630	+	0	NA	intron (NM_024078, intron 3 of 14)	L1MB5|LINE|L1	2043	NM_024078	79050		NM_024078	ENSG00000184967	NOC4L	NET49|NOC4|UTP19	nucleolar complex associated 4 homolog	protein-coding
110857	chr19	2609651	2610150	+	0	NA	intron (NM_052847, intron 2 of 4)	intron (NM_052847, intron 2 of 4)	-20815	NR_107004	102465838		NR_107004	ENSG00000277904	MIR7850	hsa-mir-7850	microRNA 7850	ncRNA
151127	chr21	44891101	44891500	+	0	NA	intron (NM_001127491, intron 11 of 15)	intron (NM_001127491, intron 11 of 15)	-17397	NR_104597	754		NM_004339	ENSG00000183255	PTTG1IP	C21orf1|C21orf3|PBF|PTTG1IP1	PTTG1 interacting protein	protein-coding
220880	chr8	103498571	103499100	+	0	NA	non-coding (NR_145697, exon 1 of 5)	non-coding (NR_145697, exon 1 of 5)	396	NR_145697	105375690		NR_145697		LOC105375690	-	uncharacterized LOC105375690	ncRNA
60629	chr13	42354251	42354800	+	0	NA	Intergenic	Intergenic	-70367	NR_135319	105370177		NR_135319	ENSG00000283554	LINC02341	-	long intergenic non-protein coding RNA 2341	ncRNA
114359	chr19	12332851	12334480	+	0	NA	promoter-TSS (NM_145276)	promoter-TSS (NM_145276)	-32	NM_145276	147837		NM_145276	ENSG00000188868	ZNF563	-	zinc finger protein 563	protein-coding
234748	chrX	23012121	23012380	+	0	NA	intron (NR_073010, intron 3 of 11)	intron (NR_073010, intron 3 of 11)	12290	NM_182699	168400		NM_182699	ENSG00000184735	DDX53	CAGE|CT26	DEAD-box helicase 53	protein-coding
29784	chr10	72275511	72277400	+	0	NA	TTS (NM_019058)	TTS (NM_019058)	2531	NM_019058	54541		NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding
147670	chr20	62298751	62299230	+	0	NA	Intergenic	Intergenic	-3906	NM_001281437	11047		NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110|PSMD16	ADRM1 26S proteasome ubiquitin receptor	protein-coding
36650	chr11	8003451	8003550	+	0	NA	Intergenic	Intergenic	13009	NR_125366	103581031		NR_125366	ENSG00000255420	CASC23	LINC01464	cancer susceptibility 23	ncRNA
124039	chr19	55501551	55502180	+	0	NA	intron (NM_001144950, intron 12 of 13)	intron (NM_001144950, intron 12 of 13)	13429	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
176822	chr4	102556251	102556550	+	0	NA	intron (NM_001382625, intron 6 of 24)	L2a|LINE|L2	-53914	NR_136202	105377621		NR_136202		LOC105377621	-	uncharacterized LOC105377621	ncRNA
92465	chr17	8632471	8632830	+	0	NA	Intergenic	(TATATATGTG)n|Simple_repeat|Simple_repeat	-1889	NM_001256095	4628		NM_005964	ENSG00000133026	MYH10	NMMHC-IIB|NMMHCB	myosin heavy chain 10	protein-coding
55548	chr12	105705671	105705830	+	0	NA	intron (NR_110108, intron 1 of 2)	L1MA2|LINE|L1	-1024	NR_110111	101929110		NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility 18	ncRNA
112306	chr19	5882471	5882830	+	0	NA	Intergenic	Intergenic	-12110	NM_002034	2527		NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding
78786	chr15	99434951	99435450	+	0	NA	Intergenic	Intergenic	-130217	NM_001352617	4205		NM_005587	ENSG00000068305	MEF2A	ADCAD1|RSRFC4|RSRFC9|mef2	myocyte enhancer factor 2A	protein-coding
114585	chr19	12932951	12934280	+	0	NA	promoter-TSS (NM_004461)	promoter-TSS (NM_004461)	96	NM_004461	2193		NM_004461	ENSG00000179115	FARSA	CML33|FARSL|FARSLA|FRSA|PheHA|RILDBC2	phenylalanyl-tRNA synthetase subunit alpha	protein-coding
227382	chr9	89507121	89508030	+	0	NA	Intergenic	MER4B|LTR|ERV1	-9462	NM_001371194	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
49530	chr12	26092701	26092930	+	0	NA	Intergenic	Intergenic	32222	NM_030762	79365		NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|FNSS1|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding
74120	chr15	55194401	55195300	+	0	NA	intron (NM_016304, intron 1 of 5)	AluJr|SINE|Alu	2091	NM_016304	51187		NM_016304	ENSG00000137876	RSL24D1	C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3	ribosomal L24 domain containing 1	protein-coding
58116	chr12	124881851	124882150	+	0	NA	Intergenic	AluSz|SINE|Alu	-18136	NM_001082959	949		NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLCQ6|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding
4059	chr1	19059821	19060200	+	0	NA	Intergenic	Intergenic	-103334	NM_001136265	126917		NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding
96096	chr17	39620351	39620450	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6552	NM_032192	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
193507	chr6	30576551	30577050	+	0	NA	intron (NM_001090, intron 1 of 23).3	intron (NM_001090, intron 1 of 23).3	5358	NM_001025091	23		NM_001090	ENSG00000204574	ABCF1	ABC27|ABC50	ATP binding cassette subfamily F member 1	protein-coding
165643	chr3	101809171	101810580	+	0	NA	intron (NM_001348997, intron 6 of 6)	L1MC4a|LINE|L1	-18115	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
210230	chr7	99366651	99366950	+	0	NA	TTS (NM_006409)	TTS (NM_006409)	-7930	NM_005720	10095		NM_005720	ENSG00000130429	ARPC1B	ARC41|IMD71|PLTEID|p40-ARC|p41-ARC	actin related protein 2/3 complex subunit 1B	protein-coding
92490	chr17	8872421	8873330	+	0	NA	Intergenic	MIR3|SINE|MIR	-5198	NR_110865	146850		NM_001010855	ENSG00000276231	PIK3R6	C17orf38|HsT41028|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 6	protein-coding
183027	chr5	73197901	73198330	+	0	NA	intron (NR_134291, intron 2 of 2)	MER45A|DNA|hAT-Tip100	3846	NR_134291	340090		NR_134291	ENSG00000287090	LOC340090	-	uncharacterized LOC340090	ncRNA
68777	chr14	91125971	91126130	+	0	NA	promoter-TSS (NR_003709)	promoter-TSS (NR_003709)	-376	NR_003709	100124539		NR_003709	ENSG00000221102	SNORA11B	-	small nucleolar RNA, H/ACA box 11B	snoRNA
99584	chr17	50503501	50503700	+	0	NA	Intergenic	Intergenic	-4839	NR_158785	84073		NM_032133	ENSG00000136449	MYCBPAP	AMAP-1|AMAP1	MYCBP associated protein	protein-coding
12673	chr1	109420671	109421380	+	0	NA	intron (NM_001199772, intron 1 of 7)	AluJo|SINE|Alu	5423	NM_001199772	5686		NM_002790	ENSG00000143106	PSMA5	PSC5|ZETA	proteasome 20S subunit alpha 5	protein-coding
161426	chr3	41881251	41881630	+	0	NA	intron (NM_017886, intron 17 of 36)	intron (NM_017886, intron 17 of 36)	80663	NM_017886	54986		NM_017886	ENSG00000168038	ULK4	FAM7C1|REC01035	unc-51 like kinase 4	protein-coding
31746	chr10	97770401	97770600	+	0	NA	intron (NM_003015, intron 1 of 2)	intron (NM_003015, intron 1 of 2)	1499	NM_003015	6425		NM_003015	ENSG00000120057	SFRP5	SARP3	secreted frizzled related protein 5	protein-coding
30048	chr10	73814451	73814550	+	0	NA	non-coding (NR_160047, exon 22 of 22)	non-coding (NR_160047, exon 22 of 22)	-2680	NR_160744	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
1519	chr1	2926721	2927000	+	0	NA	Intergenic	Intergenic	-94607	NM_080431	140625		NM_080431	ENSG00000169717	ACTRT2	ARPM2|ARPT2|Arp-T2|HARPM2	actin related protein T2	protein-coding
170056	chr3	182803121	182803380	+	0	NA	intron (NM_014616, intron 1 of 29)	L1ME3Cz|LINE|L1	9746	NM_014616	23200		NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding
34771	chr11	204651	204750	+	0	NA	3' UTR (NM_001098787, exon 4 of 4)	3' UTR (NM_001098787, exon 4 of 4)	2722	NM_001098787	51272		NM_016465	ENSG00000177951	BET1L	BET1L1|GOLIM3|GS15|HSPC197	Bet1 golgi vesicular membrane trafficking protein like	protein-coding
217115	chr8	25000021	25000580	+	0	NA	Intergenic	CpG	-43688	NM_006158	4747		NM_006158	ENSG00000277586	NEFL	CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110	neurofilament light chain	protein-coding
186664	chr5	138610651	138611550	+	0	NA	Intergenic	Intergenic	-35699	NM_004134	3313		NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding
189717	chr5	176531101	176531780	+	0	NA	intron (NM_014901, intron 4 of 10)	intron (NM_014901, intron 4 of 10)	5962	NM_014901	22838		NM_014901	ENSG00000146083	RNF44	-	ring finger protein 44	protein-coding
225692	chr9	36494851	36495150	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-77862	NR_046337	9833		NM_014791	ENSG00000165304	MELK	HPK38	maternal embryonic leucine zipper kinase	protein-coding
71809	chr15	21764901	21765300	+	0	NA	Intergenic	Intergenic	-29101	NR_135667	642131		NR_135667		LOC642131	-	immunoglobulin IGHV1OR15-3-like pseudogene	pseudo
75801	chr15	68859671	68860030	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-38955	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
214813	chr7	151210371	151210730	+	0	NA	promoter-TSS (NM_001369125)	promoter-TSS (NM_001369125)	-62	NM_001369125	114483833		NM_001369125	ENSG00000285480	H2BK1	H2BE1	H2B.K variant histone 1	protein-coding
75495	chr15	66386151	66388080	+	0	NA	5' UTR (NM_002755, exon 1 of 11)	5' UTR (NM_002755, exon 1 of 11)	203	NM_002755	5604		NM_002755	ENSG00000169032	MAP2K1	CFC3|MAPKK1|MEK1|MEL|MKK1|PRKMK1	mitogen-activated protein kinase kinase 1	protein-coding
184941	chr5	112992521	112992780	+	0	NA	intron (NM_152624, intron 3 of 10)	intron (NM_152624, intron 3 of 10)	15852	NM_152624	167227		NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding
165744	chr3	105725721	105725980	+	0	NA	intron (NM_001321822, intron 9 of 19)	AluSx1|SINE|Alu	141741	NM_001321813	868		NM_004351	ENSG00000114423	CBLB	ADMIO3|Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
50533	chr12	47900171	47900630	+	0	NA	intron (NM_001017535, intron 1 of 10)	intron (NM_001017535, intron 1 of 10)	4594	NM_001374661	7421		NM_000376	ENSG00000111424	VDR	NR1I1|PPP1R163	vitamin D receptor	protein-coding
69008	chr14	91498721	91499130	+	0	NA	intron (NR_158976, intron 2 of 16)	AluY|SINE|Alu	11385	NR_158976	55671		NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding
189689	chr5	176413801	176414000	+	0	NA	intron (NM_007097, intron 1 of 5)	intron (NM_007097, intron 1 of 5)	2639	NM_007097	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
229847	chr9	126228751	126229200	+	0	NA	Intergenic	Intergenic	46940	NR_121584	101929116		NR_121584	ENSG00000288537	LOC101929116	-	uncharacterized LOC101929116	ncRNA
41724	chr11	66659951	66660050	+	0	NA	intron (NM_001198844, intron 2 of 2)	L2b|LINE|L2	17887	NM_031492	83759		NM_031492	ENSG00000173914	RBM4B	RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B	RNA binding motif protein 4B	protein-coding
26092	chr10	13220051	13220150	+	0	NA	Intergenic	Intergenic	2831	NR_104084	101954275		NR_104084	ENSG00000201654	RNU6-7	U6-7	RNA, U6 small nuclear 7	snRNA
204205	chr7	2508051	2509330	+	0	NA	Intergenic	Intergenic	-3839	NM_001166355	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
192934	chr6	27755021	27755330	+	0	NA	Intergenic	Intergenic	-6569	NR_038929	100131289		NR_038929		LOC100131289	-	uncharacterized LOC100131289	ncRNA
157945	chr22	49797021	49797280	+	0	NA	intron (NR_146335, intron 7 of 13)	intron (NR_146335, intron 7 of 13)	27181	NR_146335	23774		NM_014577	ENSG00000100425	BRD1	BRL|BRPF1|BRPF2	bromodomain containing 1	protein-coding
88860	chr16	87687201	87687550	+	0	NA	intron (NM_020655, intron 3 of 4)	intron (NM_020655, intron 3 of 4)	78611	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
207364	chr7	44101751	44102050	+	0	NA	Intergenic	Intergenic	-2445	NM_001129	165		NM_001129	ENSG00000106624	AEBP1	ACLP	AE binding protein 1	protein-coding
210384	chr7	99837971	99838130	+	0	NA	intron (NM_057095, intron 2 of 12)	intron (NM_057095, intron 2 of 12)	10037	NM_057095	64816		NM_022820	ENSG00000021461	CYP3A43	-	cytochrome P450 family 3 subfamily A member 43	protein-coding
75460	chr15	65858721	65859430	+	0	NA	Intergenic	(TCTCTC)n|Simple_repeat|Simple_repeat	-10416	NM_004663	8766		NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
136842	chr2	184598221	184598480	+	0	NA	promoter-TSS (NM_194250)	promoter-TSS (NM_194250)	-179	NM_194250	91752		NM_194250	ENSG00000170396	ZNF804A	C2orf10	zinc finger protein 804A	protein-coding
35033	chr11	570271	570430	+	0	NA	Intergenic	AluSx|SINE|Alu	-1893	NR_038262	100506211		NR_038262	ENSG00000247095	MIR210HG	-	MIR210 host gene	ncRNA
34948	chr11	453201	453400	+	0	NA	intron (NR_138046, intron 1 of 12)	intron (NR_138046, intron 1 of 12)	3021	NM_001329545	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
181296	chr5	40021071	40021230	+	0	NA	Intergenic	L1PA16|LINE|L1	-31141	NR_104633	102467077		NR_104633		LINC00603	-	long intergenic non-protein coding RNA 603	ncRNA
189560	chr5	174997751	174998250	+	0	NA	Intergenic	MER110A|LTR|ERV1	-2269	NR_046113	441116		NM_001004348	ENSG00000204754	LINC01951	-	long intergenic non-protein coding RNA 1951	ncRNA
75108	chr15	64481251	64481350	+	0	NA	intron (NM_015042, intron 1 of 9)	CR1_Mam|LINE|CR1	20722	NM_015042	23060		NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
186763	chr5	139328621	139329300	+	0	NA	intron (NM_199189, intron 17 of 17)	AluSx1|SINE|Alu	-12872	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
201860	chr6	150439451	150439550	+	0	NA	Intergenic	AluYk2|SINE|Alu	70488	NR_134655	389434		NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding
187487	chr5	142163321	142163580	+	0	NA	Intergenic	AluYc|SINE|Alu	54671	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
88401	chr16	84642121	84642450	+	0	NA	Intergenic	MIR1_Amn|SINE|MIR	-6226	NM_001303451	79786		NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding
151974	chr22	19143851	19145030	+	0	NA	intron (NR_134304, intron 1 of 9)	intron (NR_134304, intron 1 of 9)	211	NR_134304	8220		NM_022719	ENSG00000100056	ESS2	DGCR13|DGCR14|DGS-H|DGS-I|DGSH|DGSI|ES2|ESS-2|Es2el|bis1	ess-2 splicing factor homolog	protein-coding
27448	chr10	31924601	31925530	+	0	NA	intron (NM_018287, intron 1 of 19)	MIR|SINE|MIR	3766	NM_001270698	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
88895	chr16	87763551	87763650	+	0	NA	intron (NM_001351937, intron 1 of 11)	AluSz|SINE|Alu	2386	NM_001184854	54758		NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding
103157	chr17	77422851	77423350	+	0	NA	intron (NM_001293696, intron 1 of 9)	AluSz|SINE|Alu	18023	NM_001293696	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
233159	chr9	137176601	137177530	+	0	NA	intron (NM_013366, intron 10 of 12)	MLT1C-int|LTR|ERVL-MaLR	-5009	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
192078	chr6	16660701	16660900	+	0	NA	intron (NM_000332, intron 3 of 8)	intron (NM_000332, intron 3 of 8)	99384	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
229525	chr9	122817471	122817630	+	0	NA	TTS (NM_005388)	TTS (NM_005388)	11038	NM_005388	5082		NM_005388	ENSG00000136940	PDCL	PhLP	phosducin like	protein-coding
14765	chr1	146032451	146033200	+	0	NA	Intergenic	Intergenic	-11090	NM_145277	148738		NM_145277	ENSG00000168509	HJV	HFE2|HFE2A|JH|RGMC	hemojuvelin BMP co-receptor	protein-coding
149490	chr21	32407601	32408680	+	0	NA	Intergenic	Intergenic	-3583	NM_001320745	59271		NM_058187	ENSG00000166979	EVA1C	B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21	eva-1 homolog C	protein-coding
7572	chr1	35169201	35169650	+	0	NA	Intergenic	AluSx|SINE|Alu	23720	NR_136703	6421		NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding
156563	chr22	41451971	41452130	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-5249	NM_016272	10766		NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding
131956	chr2	99407271	99407830	+	0	NA	intron (NM_001321460, intron 16 of 23)	AluSx1|SINE|Alu	70161	NM_015904	9669		NM_015904	ENSG00000158417	EIF5B	IF2	eukaryotic translation initiation factor 5B	protein-coding
67385	chr14	69780651	69781830	+	0	NA	intron (NM_003049, intron 2 of 4)	MLT1M|LTR|ERVL-MaLR	-13527	NR_029378	100289511		NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA
127983	chr2	46917521	46918150	+	0	NA	intron (NM_001288953, intron 2 of 20)	L2|LINE|L2	-1723	NM_001171507	90411		NM_139279	ENSG00000180398	MCFD2	F5F8D|F5F8D2|LMAN1IP|SDNSF	multiple coagulation factor deficiency 2, ER cargo receptor complex subunit	protein-coding
159760	chr3	16289551	16289650	+	0	NA	intron (NM_001352980, intron 6 of 9)	intron (NM_001352980, intron 6 of 9)	24388	NM_001352978	92106		NM_138381	ENSG00000154814	OXNAD1	-	oxidoreductase NAD binding domain containing 1	protein-coding
47079	chr12	591121	591650	+	0	NA	intron (NM_016533, intron 1 of 3)	intron (NM_016533, intron 1 of 3)	-4899	NR_134624	105369595		NR_134624	ENSG00000256020	LOC105369595	-	uncharacterized LOC105369595	ncRNA
87807	chr16	75555501	75556880	+	0	NA	promoter-TSS (NM_001077418)	promoter-TSS (NM_001077418)	62	NM_001077418	79583		NM_001077416	ENSG00000205084	TMEM231	ALYE870|JBTS20|MKS11|PRO1886	transmembrane protein 231	protein-coding
51606	chr12	52868771	52869130	+	0	NA	Intergenic	Intergenic	-19956	NM_173352	196374		NM_173352	ENSG00000170423	KRT78	CK-78|K5B|K78|Kb40	keratin 78	protein-coding
13874	chr1	117930971	117931130	+	0	NA	intron (NM_006784, intron 1 of 26)	AluJr4|SINE|Alu	1311	NM_006784	10885		NM_006784	ENSG00000065183	WDR3	DIP2|UTP12	WD repeat domain 3	protein-coding
83829	chr16	28853271	28853450	+	0	NA	intron (NM_001308293, intron 1 of 10)	AluSx3|SINE|Alu	6760	NM_001308293	25970		NM_015503	ENSG00000178188	SH2B1	PSM|SH2B	SH2B adaptor protein 1	protein-coding
127212	chr2	38591571	38592080	+	0	NA	intron (NM_138394, intron 1 of 12)	AluSz|SINE|Alu	11103	NM_138394	92906		NM_138394	ENSG00000143889	HNRNPLL	HNRPLL|SRRF	heterogeneous nuclear ribonucleoprotein L like	protein-coding
97755	chr17	44445571	44446400	+	0	NA	intron (NM_001304942, intron 2 of 6)	AluJr4|SINE|Alu	-9134	NM_001304943	23131		NM_001002909	ENSG00000186566	GPATCH8	GPATC8|KIAA0553	G-patch domain containing 8	protein-coding
181268	chr5	39265451	39265900	+	0	NA	intron (NM_001243093, intron 1 of 18)	AluSq2|SINE|Alu	4974	NM_001243093	2533		NM_001465	ENSG00000082074	FYB1	ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3	FYN binding protein 1	protein-coding
14790	chr1	146113451	146113930	+	0	NA	exon (NM_001039703, exon 30 of 86)	exon (NM_001039703, exon 30 of 86)	31114	NM_001302371	100132406		NM_001039703	ENSG00000271425	NBPF10	AB6|AG1|NBPF9	NBPF member 10	protein-coding
60321	chr13	40660121	40660780	+	0	NA	intron (NM_002015, intron 1 of 2)	intron (NM_002015, intron 1 of 2)	6191	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
210017	chr7	93374471	93374650	+	0	NA	Intergenic	Intergenic	108295	NR_030388	724023		NR_030388	ENSG00000208014	MIR653	MIRN653|hsa-mir-653|mir-653	microRNA 653	ncRNA
168559	chr3	147410721	147410980	+	0	NA	exon (NM_003412, exon 1 of 3)	exon (NM_003412, exon 1 of 3)	1485	NM_003412	7545		NM_003412	ENSG00000152977	ZIC1	BAIDCS|CRS6|ZIC|ZNF201	Zic family member 1	protein-coding
46489	chr11	128330871	128331430	+	0	NA	Intergenic	Intergenic	122384	NR_146647	105369564		NR_146647	ENSG00000272575	LINC02098	-	long intergenic non-protein coding RNA 2098	ncRNA
147808	chr20	62650571	62651700	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	8632	NM_016354	28231		NM_016354	ENSG00000101187	SLCO4A1	OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12	solute carrier organic anion transporter family member 4A1	protein-coding
131606	chr2	96878021	96878830	+	0	NA	exon (NM_001122646, exon 15 of 17)	exon (NM_001122646, exon 15 of 17)	-8345	NM_017789	54910		NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding
36417	chr11	4098451	4099380	+	0	NA	intron (NM_001033, intron 1 of 18)	L2a|LINE|L2	4116	NM_001033	6240		NM_001033	ENSG00000167325	RRM1	PEOB6|R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding
28147	chr10	43451621	43452730	+	0	NA	intron (NM_001355444, intron 1 of 3)	LTR52|LTR|ERVL	15064	NM_001355444	642819		NM_001355444	ENSG00000243660	ZNF487	KRBO1|ZNF487P	zinc finger protein 487	protein-coding
134086	chr2	131530651	131530750	+	0	NA	exon (NM_138770, exon 3 of 8)	exon (NM_138770, exon 3 of 8)	2812	NM_138770	90557		NM_138770	ENSG00000163040	CCDC74A	-	coiled-coil domain containing 74A	protein-coding
3699	chr1	16545471	16546080	+	0	NA	Intergenic	Intergenic	-3139	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
231100	chr9	129804651	129804750	+	0	NA	intron (NR_134113, intron 2 of 4)	AluSz|SINE|Alu	1516	NM_001317894	27348		NM_014506	ENSG00000136816	TOR1B	DQ1	torsin family 1 member B	protein-coding
151038	chr21	44627801	44628000	+	0	NA	exon (NM_198690, exon 1 of 1)	exon (NM_198690, exon 1 of 1)	807	NM_198690	386676		NM_198690	ENSG00000221837	KRTAP10-9	KAP10.9|KAP18.9|KRTAP18-9	keratin associated protein 10-9	protein-coding
149761	chr21	34693301	34693730	+	0	NA	intron (NM_053277, intron 1 of 5)	intron (NM_053277, intron 1 of 5)	24521	NM_001317009	54102		NM_053277	ENSG00000159212	CLIC6	CLIC1L	chloride intracellular channel 6	protein-coding
66023	chr14	58271121	58271850	+	0	NA	intron (NR_038123, intron 9 of 9)	AluSx|SINE|Alu	-16548	NR_146595	55451		NR_146595	ENSG00000279636	LINC00216	C14orf107|NCRNA00216|PRO1617	long intergenic non-protein coding RNA 216	ncRNA
44366	chr11	102466451	102467230	+	0	NA	promoter-TSS (NR_135076)	promoter-TSS (NR_135076)	-415	NR_135076	102723838		NR_135076	ENSG00000255482	LOC102723838	-	uncharacterized LOC102723838	ncRNA
159491	chr3	14180221	14180480	+	0	NA	intron (NM_014463, intron 1 of 3)	AluSx|SINE|Alu	1533	NM_014463	27258		NM_014463	ENSG00000170860	LSM3	SMX4|USS2|YLR438C	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding
130503	chr2	85592571	85592730	+	0	NA	intron (NM_006634, intron 2 of 2)	AluSx4|SINE|Alu	-3095	NM_016494	51255		NM_016494	ENSG00000168894	RNF181	HSPC238	ring finger protein 181	protein-coding
119411	chr19	40272071	40272430	+	0	NA	intron (NM_001243027, intron 1 of 13)	MIRb|SINE|MIR	-6899	NM_001330511	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
76227	chr15	73934021	73934680	+	0	NA	intron (NM_005576, intron 1 of 6)	L2b|LINE|L2	-6102	NR_040068	100287616		NR_040066	ENSG00000261801	LOXL1-AS1	-	LOXL1 antisense RNA 1	ncRNA
110214	chr19	1751801	1752500	+	0	NA	Intergenic	Intergenic	-1356	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
20164	chr1	192810971	192811150	+	0	NA	exon (NM_002923, exon 4 of 5)	exon (NM_002923, exon 4 of 5)	2021	NM_002923	5997		NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G protein signaling 2	protein-coding
150294	chr21	41953551	41955030	+	0	NA	promoter-TSS (NM_015500)	promoter-TSS (NM_015500)	-272	NM_015500	25966		NM_015500	ENSG00000157617	C2CD2	C21orf25|C21orf258|TMEM24L	C2 calcium dependent domain containing 2	protein-coding
100490	chr17	61862951	61864400	+	0	NA	promoter-TSS (NM_032043)	promoter-TSS (NM_032043)	-147	NM_032043	83990		NM_032043	ENSG00000136492	BRIP1	BACH1|FANCJ|OF	BRCA1 interacting helicase 1	protein-coding
102516	chr17	75789371	75789730	+	0	NA	intron (NM_001080419, intron 1 of 15)	AluY|SINE|Alu	4711	NR_038131	85451		NM_001080419	ENSG00000132478	UNK	UNKEMPT|ZC3H5|ZC3HDC5	unk zinc finger	protein-coding
65757	chr14	53963521	53963830	+	0	NA	Intergenic	CpG	-6784	NM_001347913	652		NM_001202	ENSG00000125378	BMP4	BMP2B|BMP2B1|MCOPS6|OFC11|ZYME	bone morphogenetic protein 4	protein-coding
102831	chr17	76465201	76465400	+	0	NA	intron (NM_001166579, intron 3 of 6)	intron (NM_001166579, intron 3 of 6)	-2303	NM_001088	15		NM_001088	ENSG00000129673	AANAT	DSPS|SNAT	aralkylamine N-acetyltransferase	protein-coding
180976	chr5	35784351	35784950	+	0	NA	intron (NM_024867, intron 30 of 36)	L2b|LINE|L2	-72241	NR_120485	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
128832	chr2	63424671	63425030	+	0	NA	intron (NR_148704, intron 10 of 18)	L1PA16|LINE|L1	13157	NM_001042692	51057		NM_015910	ENSG00000143951	WDPCP	BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ	WD repeat containing planar cell polarity effector	protein-coding
167182	chr3	128127251	128127600	+	0	NA	intron (NM_001319086, intron 1 of 9)	intron (NM_001319086, intron 1 of 9)	-3613	NM_003707	8607		NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding
95387	chr17	35895071	35895230	+	0	NA	Intergenic	AluYb8|SINE|Alu	-14790	NM_002985	6352		NM_002985	ENSG00000271503	CCL5	D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP	C-C motif chemokine ligand 5	protein-coding
195126	chr6	35671021	35671300	+	0	NA	intron (NM_001145775, intron 2 of 11)	AluJb|SINE|Alu	-6371	NR_049873	100847048		NR_049873	ENSG00000265527	MIR5690	-	microRNA 5690	ncRNA
119597	chr19	40745171	40745330	+	0	NA	intron (NR_148550, intron 2 of 5)	intron (NR_148550, intron 2 of 5)	5227	NR_148549	284325		NM_198476	ENSG00000188493	ACTMAP	C19orf54	actin maturation protease	protein-coding
52404	chr12	55747121	55747500	+	0	NA	intron (NM_005811, intron 1 of 2)	intron (NM_005811, intron 1 of 2)	4188	NM_005811	10220		NM_005811	ENSG00000135414	GDF11	BMP-11|BMP11|VHO	growth differentiation factor 11	protein-coding
159517	chr3	14411901	14412100	+	0	NA	intron (NR_103507, intron 1 of 13)	intron (NR_103507, intron 1 of 13)	9394	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
41212	chr11	65660471	65660630	+	0	NA	intron (NM_001243984, intron 4 of 10)	L2a|LINE|L2	2366	NM_021975	5970		NM_021975	ENSG00000173039	RELA	AIF3BL3|CMCU|NFKB3|p65	RELA proto-oncogene, NF-kB subunit	protein-coding
237263	chrX	110317221	110318740	+	0	NA	exon (NM_015365, exon 1 of 6)	exon (NM_015365, exon 1 of 6)	105	NM_015365	9949		NM_015365	ENSG00000101935	AMMECR1	AMMERC1|MFHIEN	AMMECR nuclear protein 1	protein-coding
183249	chr5	76408071	76408580	+	0	NA	intron (NM_006633, intron 1 of 35)	intron (NM_006633, intron 1 of 35)	5040	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
72642	chr15	38491151	38491450	+	0	NA	intron (NM_001306086, intron 14 of 14)	intron (NM_001306086, intron 14 of 14)	37173	NM_173611	283742		NM_173611	ENSG00000171262	FAM98B	-	family with sequence similarity 98 member B	protein-coding
193886	chr6	31589271	31589630	+	0	NA	TTS (NM_001166538)	TTS (NM_001166538)	2250	NM_205840	7940		NM_007161	ENSG00000204482	LST1	B144|D6S49E|LST-1	leukocyte specific transcript 1	protein-coding
235431	chrX	45809321	45809580	+	0	NA	Intergenic	Intergenic	42040	NR_125365	401585		NR_125365		LINC02595	-	long intergenic non-protein coding RNA 2595	ncRNA
19159	chr1	171593721	171594380	+	0	NA	TTS (NM_015172)	TTS (NM_015172)	-25713	NM_001368164	110806290		NM_001368164	ENSG00000283683	MYOCOS	-	myocilin opposite strand	protein-coding
6625	chr1	28898151	28898450	+	0	NA	intron (NM_001376022, intron 1 of 20)	intron (NM_001376022, intron 1 of 20)	11200	NM_001376023	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
208706	chr7	73296921	73297980	+	0	NA	Intergenic	Intergenic	11376	NM_001168347	55695		NM_018044	ENSG00000130305	NSUN5	NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120|p120(NOL1)	NOP2/Sun RNA methyltransferase 5	protein-coding
117781	chr19	29771801	29772080	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-40051	NM_001322261	898		NM_001238	ENSG00000105173	CCNE1	CCNE|pCCNE1	cyclin E1	protein-coding
145932	chr20	46022611	46023430	+	0	NA	promoter-TSS (NR_147699)	promoter-TSS (NR_147699)	-947	NR_147699	109729184		NR_147699	ENSG00000204044	SLC12A5-AS1	-	SLC12A5 and MMP9 antisense RNA 1	ncRNA
100761	chr17	63967921	63968200	+	0	NA	exon (NM_000334, exon 6 of 24)	exon (NM_000334, exon 6 of 24)	4858	NM_000334	6329		NM_000334	ENSG00000007314	SCN4A	CMS16|CMYP22A|HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1	sodium voltage-gated channel alpha subunit 4	protein-coding
90853	chr17	2363451	2363980	+	0	NA	intron (NM_001346700, intron 7 of 22)	intron (NM_001346700, intron 7 of 22)	26214	NM_014853	9905		NM_014853	ENSG00000141258	SGSM2	RUTBC1	small G protein signaling modulator 2	protein-coding
23045	chr1	226602171	226602530	+	0	NA	3' UTR (NM_001003665, exon 4 of 4)	3' UTR (NM_001003665, exon 4 of 4)	53586	NM_001003665	375057		NM_001003665	ENSG00000203685	STUM	C1orf95	stum, mechanosensory transduction mediator homolog	protein-coding
102337	chr17	75454921	75455180	+	0	NA	Intergenic	AluJr|SINE|Alu	-1585	NM_014738	9772		NM_014738	ENSG00000177728	TMEM94	IDDCDF|KIAA0195	transmembrane protein 94	protein-coding
232339	chr9	135478471	135479130	+	0	NA	promoter-TSS (NM_014811)	promoter-TSS (NM_014811)	-982	NM_014811	9858		NM_014811	ENSG00000196422	PPP1R26	KIAA0649|NRBE3	protein phosphatase 1 regulatory subunit 26	protein-coding
19357	chr1	173856851	173857250	+	0	NA	intron (NM_018122, intron 16 of 16)	intron (NM_018122, intron 16 of 16)	-6198	NR_037605	100506046		NR_037605		GAS5-AS1	-	GAS5 antisense RNA 1	ncRNA
145505	chr20	43961001	43961200	+	0	NA	intron (NM_032883, intron 2 of 9)	intron (NM_032883, intron 2 of 9)	15204	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
226175	chr9	64658901	64659200	+	0	NA	intron (NR_160670, intron 4 of 4)	intron (NR_160670, intron 4 of 4)	19316	NR_136299	101929583		NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene	pseudo
91888	chr17	7277701	7278100	+	0	NA	Intergenic	L1M5|LINE|L1	-3818	NM_001042	6517		NM_001042	ENSG00000181856	SLC2A4	GLUT4	solute carrier family 2 member 4	protein-coding
234767	chrX	23784201	23785480	+	0	NA	intron (NR_027783, intron 4 of 6)	intron (NR_027783, intron 4 of 6)	1682	NM_002970	6303		NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding
75073	chr15	64357301	64357630	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1292	NM_001329607	53944		NM_022048	ENSG00000169118	CSNK1G1	CK1gamma1	casein kinase 1 gamma 1	protein-coding
104769	chr17	81704801	81705000	+	0	NA	intron (NM_002949, intron 3 of 4)	intron (NM_002949, intron 3 of 4)	1533	NM_002949	6182		NM_002949	ENSG00000262814	MRPL12	5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12|bL12m	mitochondrial ribosomal protein L12	protein-coding
65277	chr14	50003091	50003850	+	0	NA	non-coding (NR_126496, exon 1 of 5)	non-coding (NR_126496, exon 1 of 5)	3049	NR_126496	283551		NM_001012706	ENSG00000214900	LINC01588	C14orf182	long intergenic non-protein coding RNA 1588	ncRNA
192162	chr6	17589551	17590250	+	0	NA	Intergenic	Tigger4|DNA|TcMar-Tigger	-10402	NM_016255	51439		NM_016255	ENSG00000137414	FAM8A1	AHCP	family with sequence similarity 8 member A1	protein-coding
18574	chr1	163319801	163320000	+	0	NA	intron (NR_045630, intron 1 of 3)	intron (NR_045630, intron 1 of 3)	1891	NR_045630	127814295		NR_045630	ENSG00000232995	LOC127814295	-	uncharacterized LOC127814295	ncRNA
81650	chr16	10948371	10948530	+	0	NA	intron (NM_001243403, intron 1 of 20)	intron (NM_001243403, intron 1 of 20)	3886	NM_015226	23274		NM_015226	ENSG00000038532	CLEC16A	Gop-1|KIAA0350	C-type lectin domain containing 16A	protein-coding
26322	chr10	15106221	15107030	+	0	NA	3' UTR (NM_001308295, exon 13 of 13)	3' UTR (NM_001308295, exon 13 of 13)	9270	NM_001097590	10557		NM_006414	ENSG00000152464	RPP38	-	ribonuclease P/MRP subunit p38	protein-coding
88529	chr16	85410101	85410300	+	0	NA	Intergenic	Intergenic	-103875	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA
159336	chr3	13070601	13071000	+	0	NA	intron (NM_001376938, intron 2 of 15)	intron (NM_001376938, intron 2 of 15)	2629	NM_001134382	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
140486	chr2	233188571	233188930	+	0	NA	intron (NM_001017915, intron 21 of 26).2	AluSz|SINE|Alu	-62821	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
107716	chr18	49785901	49786590	+	0	NA	intron (NM_006111, intron 8 of 9)	MamRTE1|LINE|RTE-BovB	27288	NM_006111	10449		NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
929	chr1	1718151	1718450	+	0	NA	intron (NM_033529, intron 4 of 19)	intron (NM_033529, intron 4 of 19)	6057	NR_132739	728642		NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding
112581	chr19	6661621	6662350	+	0	NA	3' UTR (NM_003807, exon 5 of 5)	3' UTR (NM_003807, exon 5 of 5)	8173	NM_172014	8740		NM_003807	ENSG00000125735	TNFSF14	CD258|HVEML|LIGHT|LTg	TNF superfamily member 14	protein-coding
91181	chr17	3848971	3849130	+	0	NA	Intergenic	AluY|SINE|Alu	-2804	NM_001114118	55421		NM_018553	ENSG00000074356	NCBP3	C17orf85|ELG|HSA277841	nuclear cap binding subunit 3	protein-coding
95189	chr17	35211771	35212200	+	0	NA	Intergenic	Intergenic	-17592	NM_152462	146861		NM_152462	ENSG00000164729	SLC35G3	AMAC1|TMEM21A	solute carrier family 35 member G3	protein-coding
202080	chr6	154251371	154251680	+	0	NA	intron (NM_001130700, intron 3 of 11)	MIR|SINE|MIR	78556	NM_001130699	26034		NM_015553	ENSG00000074706	IPCEF1	PIP3-E|PIP3E	interaction protein for cytohesin exchange factors 1	protein-coding
6677	chr1	29137451	29137750	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13697	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
222628	chr8	141095351	141095650	+	0	NA	Intergenic	Intergenic	-33089	NM_001362798	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
69173	chr14	92614351	92614700	+	0	NA	intron (NM_024832, intron 3 of 9)	THE1B|LTR|ERVL-MaLR	38291	NM_001319987	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
180588	chr5	14957371	14957730	+	0	NA	Intergenic	Intergenic	-85772	NM_054027	56172		NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1	ANKH inorganic pyrophosphate transport regulator	protein-coding
211701	chr7	106788551	106788930	+	0	NA	Intergenic	L1MD2|LINE|L1	-76542	NM_001282427	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
75286	chr15	65129671	65130030	+	0	NA	intron (NM_005707, intron 1 of 4)	AluJr|SINE|Alu	3958	NM_005707	10081		NM_005707	ENSG00000090470	PDCD7	59K|ES18|HES18	programmed cell death 7	protein-coding
221754	chr8	127785171	127785530	+	0	NA	Intergenic	Intergenic	-9183	NR_003367	5820		NR_003367	ENSG00000249859	PVT1	LINC00079|MIR1204HG|NCRNA00079|TP53LC09|onco-lncRNA-100	Pvt1 oncogene	ncRNA
221903	chr8	128657201	128658080	+	0	NA	Intergenic	Intergenic	-92961	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
152487	chr22	20867601	20867800	+	0	NA	intron (NM_004782, intron 1 of 4)	intron (NM_004782, intron 1 of 4)	8693	NM_004782	9342		NM_004782	ENSG00000099940	SNAP29	CEDNIK|SNAP-29	synaptosome associated protein 29	protein-coding
169141	chr3	156284451	156284570	+	0	NA	intron (NM_003471, intron 1 of 13)	L1PA2|LINE|L1	-6477	NM_172159	7881		NM_003471	ENSG00000169282	KCNAB1	AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3	potassium voltage-gated channel subfamily A regulatory beta subunit 1	protein-coding
97275	chr17	43026671	43027300	+	0	NA	intron (NM_005440, intron 2 of 4)	intron (NM_005440, intron 2 of 4)	1754	NM_005440	8153		NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding
24405	chr1	243251051	243251580	+	0	NA	intron (NM_001042405, intron 1 of 18).2	L3b|LINE|CR1	3966	NM_014812	9859		NM_014812	ENSG00000143702	CEP170	FAM68A|KAB|KIAA0470	centrosomal protein 170	protein-coding
24891	chr10	1010801	1011000	+	0	NA	intron (NM_012341, intron 13 of 16)	intron (NM_012341, intron 13 of 16)	-11737	NR_027709	55853		NM_018470	ENSG00000232656	IDI2-AS1	C10orf110|HT009|IDI2-AS	IDI2 antisense RNA 1	ncRNA
234510	chrX	19382801	19383030	+	0	NA	intron (NM_001001671, intron 18 of 28)	LTR50|LTR|ERVL	38988	NM_001173454	5160		NM_000284	ENSG00000131828	PDHA1	E1alpha|PDHA|PDHAD|PDHCE1A|PHE1A	pyruvate dehydrogenase E1 subunit alpha 1	protein-coding
235396	chrX	45135201	45135850	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	65351	NM_024689	79742		NM_024689	ENSG00000147113	DIPK2B	4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1	divergent protein kinase domain 2B	protein-coding
213930	chr7	142619401	142619600	+	0	NA	intron (NM_001363538, intron 11 of 11)	intron (NM_001363538, intron 11 of 11)	-46799	NM_001190487	100463482		NM_001190487		MTRNR2L6	HN6	MT-RNR2 like 6 (pseudogene)	pseudo
96326	chr17	40019471	40020050	+	0	NA	intron (NM_014815, intron 25 of 25)	intron (NM_014815, intron 25 of 25)	4320	NM_001178147	1440		NM_000759	ENSG00000108342	CSF3	C17orf33|CSF3OS|GCSF	colony stimulating factor 3	protein-coding
74731	chr15	63195421	63196650	+	0	NA	intron (NM_016530, intron 1 of 7)	MER102c|DNA|hAT-Charlie	6429	NM_016530	51762		NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding
109486	chr19	817301	817600	+	0	NA	intron (NM_001270366, intron 2 of 7)	AluSz|SINE|Alu	3866	NR_036154	100422854		NR_036154	ENSG00000263414	MIR3187	mir-3187	microRNA 3187	ncRNA
37905	chr11	34074571	34075150	+	0	NA	intron (NM_203364, intron 4 of 17)	AluSx|SINE|Alu	23129	NM_203364	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
2951	chr1	11907201	11908500	+	0	NA	promoter-TSS (NR_002754)	promoter-TSS (NR_002754)	-304	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
153129	chr22	23719621	23720030	+	0	NA	Intergenic	AluY|SINE|Alu	-2402	NR_024448	91316		NR_024448	ENSG00000228315	GUSBP11	-	GUSB pseudogene 11	pseudo
86542	chr16	67181221	67181930	+	0	NA	5' UTR (NM_001369682, exon 2 of 8)	5' UTR (NM_001369682, exon 2 of 8)	2388	NM_001369680	653319		NM_001040715	ENSG00000196123	MATCAP1	KIAA0895L|TMCP1	microtubule associated tyrosine carboxypeptidase 1	protein-coding
28349	chr10	46788101	46788550	+	0	NA	intron (NR_003611, intron 1 of 8)	intron (NR_003611, intron 1 of 8)	-1555	NR_111968	414212		NR_048574	ENSG00000290875	GLUD1P2	GLUD1P7|GLUDP2|GLUDP7	glutamate dehydrogenase 1 pseudogene 2	pseudo
221653	chr8	125944151	125944880	+	0	NA	non-coding (NR_038446, exon 2 of 2)	non-coding (NR_038446, exon 2 of 2)	6682	NR_038447	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
237686	chrX	124361221	124361500	+	0	NA	intron (NM_002351, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	14797	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
22581	chr1	222880571	222880850	+	0	NA	intron (NM_001377228, intron 1 of 7)	intron (NM_001377228, intron 1 of 7)	-47714	NM_001369594	84976		NM_032890	ENSG00000154309	DISP1	DISPA	dispatched RND transporter family member 1	protein-coding
24198	chr1	236035251	236035350	+	0	NA	intron (NM_002508, intron 5 of 19)	L1PA2|LINE|L1	29790	NM_002508	4811		NM_002508	ENSG00000116962	NID1	NID	nidogen 1	protein-coding
225918	chr9	40322821	40323080	+	0	NA	promoter-TSS (NR_026759)	promoter-TSS (NR_026759)	-621	NR_136310	105379252		NR_136310	ENSG00000290970	LOC105379252	-	family with sequence similarity 95 member B1-like	ncRNA
155889	chr22	39524471	39524990	+	0	NA	Intergenic	L2a|LINE|L2	4166	NM_182810	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
137180	chr2	191128121	191128900	+	0	NA	intron (NM_003151, intron 3 of 23)	intron (NM_003151, intron 3 of 23)	22484	NM_003151	6775		NM_003151	ENSG00000138378	STAT4	DPMC|SLEB11	signal transducer and activator of transcription 4	protein-coding
119742	chr19	41272301	41272500	+	0	NA	intron (NM_144732, intron 3 of 14)	intron (NM_144732, intron 3 of 14)	7319	NM_001301016	11100		NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding
125070	chr2	9637571	9637930	+	0	NA	Intergenic	Intergenic	-6753	NM_006826	10971		NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding
16666	chr1	155180101	155180300	+	0	NA	intron (NM_001256599, intron 8 of 9)	AluJr|SINE|Alu	5446	NM_001256601	80128		NM_025058	ENSG00000163462	TRIM46	GENEY|TRIFIC	tripartite motif containing 46	protein-coding
182945	chr5	71067171	71068300	+	0	NA	promoter-TSS (NM_001354439)	promoter-TSS (NM_001354439)	4	NM_001364572	2966		NM_001515	ENSG00000145736	GTF2H2	BTF2|BTF2 p44|BTF2P44|T-BTF2P44|TFIIH|p44	general transcription factor IIH subunit 2	protein-coding
118564	chr19	36211451	36211830	+	0	NA	intron (NM_001366189, intron 1 of 5)	AluY|SINE|Alu	1939	NM_001366189	147929		NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding
86054	chr16	57580151	57580680	+	0	NA	Intergenic	AluSc8|SINE|Alu	37772	NM_001318481	221188		NM_153837	ENSG00000159618	ADGRG5	GPR114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
220556	chr8	100714101	100715050	+	0	NA	intron (NM_002568, intron 4 of 14)	AluSz|SINE|Alu	7513	NM_002568	26986		NM_002568	ENSG00000070756	PABPC1	PAB1|PABP|PABP1|PABPC2|PABPL1	poly(A) binding protein cytoplasmic 1	protein-coding
202201	chr6	156564401	156564800	+	0	NA	Intergenic	Intergenic	185850	NR_145751	109617011		NR_145751	ENSG00000212295	SNORD28B	-	small nucleolar RNA, C/D box 28B	snoRNA
228202	chr9	97802521	97802780	+	0	NA	intron (NR_147055, intron 5 of 10)	L1MB2|LINE|L1	50430	NR_147055	101928337		NR_147055	ENSG00000236130	PTCSC2	-	papillary thyroid carcinoma susceptibility candidate 2	ncRNA
77884	chr15	89068251	89068550	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-20056	NM_007011	11057		NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2, acylglycerol lipase	protein-coding
33719	chr10	121927171	121929000	+	0	NA	promoter-TSS (NM_001288735)	promoter-TSS (NM_001288735)	-22	NM_001288734	11101		NM_007041	ENSG00000107669	ATE1	-	arginyltransferase 1	protein-coding
43787	chr11	86283971	86284380	+	0	NA	Intergenic	Intergenic	5842	NR_106813	102465452		NR_106813	ENSG00000283744	MIR6755	hsa-mir-6755	microRNA 6755	ncRNA
113914	chr19	10699601	10700200	+	0	NA	Intergenic	Intergenic	-1539	NM_031209	81890		NM_031209	ENSG00000213339	QTRT1	FP3235|TGT|TGUT	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding
153994	chr22	30395771	30396030	+	0	NA	Intergenic	Intergenic	-1041	NM_033382	23541		NM_012429	ENSG00000100003	SEC14L2	C22orf6|SPF|TAP|TAP1	SEC14 like lipid binding 2	protein-coding
27626	chr10	32943251	32943680	+	0	NA	intron (NM_002211, intron 1 of 15)	intron (NM_002211, intron 1 of 15)	-7907	NM_033668	3688		NM_002211	ENSG00000150093	ITGB1	CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB	integrin subunit beta 1	protein-coding
134534	chr2	143679721	143679980	+	0	NA	intron (NM_018460, intron 12 of 13)	intron (NM_018460, intron 12 of 13)	-257217	NR_110237	101928386		NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA
107133	chr18	35118101	35118300	+	0	NA	intron (NR_046177, intron 4 of 6)	intron (NR_046177, intron 4 of 6)	76787	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
235368	chrX	44893421	44893700	+	0	NA	intron (NM_001291416, intron 2 of 28)	AluY|SINE|Alu	20372	NM_001291415	7403		NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding
176478	chr4	89619401	89619800	+	0	NA	Intergenic	Intergenic	152134	NM_001375290	6622		NM_000345	ENSG00000145335	SNCA	NACP|PARK1|PARK4|PD1	synuclein alpha	protein-coding
229341	chr9	120913571	120914680	+	0	NA	intron (NM_005658, intron 4 of 7)	intron (NM_005658, intron 4 of 7)	447	NM_001190947	7185		NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding
183276	chr5	76480101	76480300	+	0	NA	intron (NM_006633, intron 2 of 35)	intron (NM_006633, intron 2 of 35)	-67209	NM_001285460	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
89112	chr16	88495151	88495930	+	0	NA	intron (NM_153813, intron 3 of 9)	intron (NM_153813, intron 3 of 9)	26622	NR_049821	100847057		NR_049821	ENSG00000263456	MIR5189	mir-5189	microRNA 5189	ncRNA
211639	chr7	106116971	106117130	+	0	NA	Intergenic	MER83A-int|LTR|ERV1	-4474	NM_001381918	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
2614	chr1	10112971	10113130	+	0	NA	intron (NM_001105562, intron 7 of 27)	MSTB|LTR|ERVL-MaLR	80092	NM_006048	10277		NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding
38997	chr11	47645271	47645630	+	0	NA	Intergenic	Intergenic	-2796	NM_001317232	23788		NM_014342	ENSG00000109919	MTCH2	HSPC032|MIMP|SLC25A50	mitochondrial carrier 2	protein-coding
180949	chr5	35089751	35090050	+	0	NA	intron (NM_000949, intron 2 of 9)	intron (NM_000949, intron 2 of 9)	28222	NM_001204316	5618		NM_000949	ENSG00000113494	PRLR	HPRL|MFAB|RI-PRLR|hPRLrI	prolactin receptor	protein-coding
64991	chr14	38077051	38077350	+	0	NA	Intergenic	Intergenic	-130704	NM_001049	6751		NM_001049	ENSG00000139874	SSTR1	SRIF-2|SS-1-R|SS1-R|SS1R|SST1	somatostatin receptor 1	protein-coding
42971	chr11	73770571	73770930	+	0	NA	Intergenic	L2c|LINE|L2	-9676	NM_001243718	5870		NM_002869	ENSG00000175582	RAB6A	RAB6	RAB6A, member RAS oncogene family	protein-coding
3841	chr1	16911901	16912800	+	0	NA	Intergenic	MIRb|SINE|MIR	-9581	NM_014675	9696		NM_014675	ENSG00000058453	CROCC	CROCC1|ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding
123611	chr19	54517451	54517950	+	0	NA	Intergenic	Intergenic	14869	NM_021270	3904		NM_002288	ENSG00000167618	LAIR2	CD306	leukocyte associated immunoglobulin like receptor 2	protein-coding
29743	chr10	72136271	72136500	+	0	NA	intron (NM_001369103, intron 6 of 9)	LTR12|LTR|ERV1	-47353	NM_001134434	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
110800	chr19	2459621	2460080	+	0	NA	intron (NR_134931, intron 1 of 1)	AluSz|SINE|Alu	2335	NR_134931	101928602		NR_134931	ENSG00000267201	LINC01775	-	long intergenic non-protein coding RNA 1775	ncRNA
24356	chr1	240611201	240612200	+	0	NA	intron (NM_022469, intron 1 of 1)	intron (NM_022469, intron 1 of 1)	455	NM_022469	64388		NM_022469	ENSG00000180875	GREM2	CKTSF1B2|DAND3|PRDC|STHAG9	gremlin 2, DAN family BMP antagonist	protein-coding
7822	chr1	36299871	36300430	+	0	NA	intron (NM_001321471, intron 10 of 12)	intron (NM_001321471, intron 10 of 12)	-6218	NM_001162530	79729		NM_024676	ENSG00000214193	SH3D21	C1orf113	SH3 domain containing 21	protein-coding
116272	chr19	17703771	17704430	+	0	NA	Intergenic	Intergenic	-15380	NM_018174	55201		NM_018174	ENSG00000130479	MAP1S	BPY2IP1|C19orf5|MAP8|VCY2IP-1|VCY2IP1	microtubule associated protein 1S	protein-coding
145164	chr20	38846971	38847750	+	0	NA	intron (NM_001172735, intron 2 of 9)	AluSx1|SINE|Alu	41663	NM_015568	26051		NM_015568	ENSG00000101445	PPP1R16B	ANKRD4|TIMAP	protein phosphatase 1 regulatory subunit 16B	protein-coding
42302	chr11	68456671	68456830	+	0	NA	Intergenic	AluSz|SINE|Alu	-4002	NM_001352371	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
147977	chr20	62988571	62988730	+	0	NA	Intergenic	AluSx|SINE|Alu	18314	NM_080606	128408		NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding
173715	chr4	15778301	15779930	+	0	NA	intron (NR_132660, intron 1 of 6)	intron (NR_132660, intron 1 of 6)	787	NR_132660	952		NM_001775	ENSG00000004468	CD38	ADPRC 1|ADPRC1|cADPR1	CD38 molecule	protein-coding
230335	chr9	127992001	127992200	+	0	NA	Intergenic	MIR|SINE|MIR	-11111	NM_001035254	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
118105	chr19	34476751	34477050	+	0	NA	Intergenic	Intergenic	-4858	NM_001080436	126374		NM_001080436	ENSG00000142279	WTIP	-	WT1 interacting protein	protein-coding
40154	chr11	62862101	62863500	+	0	NA	intron (NM_001012664, intron 1 of 9)	intron (NM_001012664, intron 1 of 9)	6691	NM_001012664	6520		NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding
121302	chr19	46733001	46733200	+	0	NA	exon (NM_013403, exon 5 of 18)	exon (NM_013403, exon 5 of 18)	-12957	NM_024301	79147		NM_024301	ENSG00000181027	FKRP	FKTR|LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5	fukutin related protein	protein-coding
83560	chr16	28095871	28096400	+	0	NA	Intergenic	Intergenic	-32421	NM_001323900	146395		NM_144675	ENSG00000169181	GSG1L	PRO19651	GSG1 like	protein-coding
150788	chr21	43865601	43866500	+	0	NA	intron (NM_001369878, intron 1 of 8)	intron (NM_001369878, intron 1 of 8)	827	NM_001369878	56894		NM_020132	ENSG00000160216	AGPAT3	1-AGPAT 3|LPAAT-GAMMA1|LPAAT3|LPLAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding
179025	chr4	165112001	165113700	+	0	NA	promoter-TSS (NM_001100389)	promoter-TSS (NM_001100389)	10	NM_001100389	201931		NM_152681	ENSG00000170088	TMEM192	-	transmembrane protein 192	protein-coding
166375	chr3	113111221	113111600	+	0	NA	Intergenic	Intergenic	56321	NR_110823	101929717		NR_110823	ENSG00000243795	LINC02044	-	long intergenic non-protein coding RNA 2044	ncRNA
97622	chr17	44159621	44160280	+	0	NA	intron (NM_001171251, intron 9 of 9)	LTR13A|LTR|ERVK	-10754	NM_080863	92591		NM_080863	ENSG00000161664	ASB16	-	ankyrin repeat and SOCS box containing 16	protein-coding
80631	chr16	2986501	2987330	+	0	NA	Intergenic	Intergenic	-2139	NR_033861	283875		NM_001396456	ENSG00000262152	GREP1	G029442|LA16c-380H5.1|LA16c-380H5.3|LINC00514	glycine rich extracellular protein 1	protein-coding
15042	chr1	148379001	148379400	+	0	NA	Intergenic	CpG	-9082	NR_106967	102466225		NR_106967	ENSG00000278596	MIR6077	MIR6077-1|MIR6077-2|hsa-mir-6077|hsa-mir-6077-1|hsa-mir-6077-2	microRNA 6077	ncRNA
166840	chr3	123026851	123028050	+	0	NA	intron (NR_046079, intron 1 of 22)	CpG	313	NM_001031702	54437		NM_018987	ENSG00000082684	SEMA5B	SEMAG|SemG	semaphorin 5B	protein-coding
232033	chr9	133403651	133404380	+	0	NA	non-coding (NR_103997, exon 12 of 14)	non-coding (NR_103997, exon 12 of 14)	-10322	NR_024514	11093		NM_139025	ENSG00000160323	ADAMTS13	ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein-coding
17362	chr1	156509551	156509850	+	0	NA	Intergenic	Intergenic	-8925	NM_005920	4209		NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding
64782	chr14	34810101	34810300	+	0	NA	intron (NM_013448, intron 5 of 26)	intron (NM_013448, intron 5 of 26)	-63991	NR_160776	112268124		NR_160776	ENSG00000258738	BAZ1A-AS1	-	BAZ1A antisense RNA 1	ncRNA
60091	chr13	36345021	36345800	+	0	NA	intron (NM_001142296, intron 1 of 9)	intron (NM_001142296, intron 1 of 9)	984	NM_001142296	23111		NM_015087	ENSG00000133104	SPART	SPG20|TAHCCP1	spartin	protein-coding
62659	chr13	102402071	102402600	+	0	NA	promoter-TSS (NM_001321937)	promoter-TSS (NM_001321937)	93	NM_001321949	2259		NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|NYS4|SCA27|SCA27A|SCA27B	fibroblast growth factor 14	protein-coding
42748	chr11	72716101	72716700	+	0	NA	intron (NM_001040118, intron 3 of 34)	LTR87|LTR|ERVL?	5940	NR_161388	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
218737	chr8	58802321	58802900	+	0	NA	Intergenic	Intergenic	-142757	NM_003580	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
83595	chr16	28174801	28175350	+	0	NA	intron (NM_001270940, intron 5 of 24)	intron (NM_001270940, intron 5 of 24)	36890	NM_001270940	23214		NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
66393	chr14	61496071	61496580	+	0	NA	intron (NM_006255, intron 10 of 13)	MIRc|SINE|MIR	73869	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
15554	chr1	150545001	150545200	+	0	NA	Intergenic	AluSp|SINE|Alu	-4308	NM_001288608	54507		NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding
178153	chr4	142346851	142347350	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	-41156	NM_001385459	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
34251	chr10	131085301	131085500	+	0	NA	Intergenic	L2a|LINE|L2	-9818	NR_120623	101927489		NR_120623	ENSG00000230098	TCERG1L-AS1	-	TCERG1L antisense RNA 1	ncRNA
104835	chr17	81830001	81830400	+	0	NA	intron (NM_001288798, intron 1 of 6)	intron (NM_001288798, intron 1 of 6)	3091	NM_001288798	348262		NM_207368	ENSG00000225663	MCRIP1	FAM195B|GRAN2|MCRIP	MAPK regulated corepressor interacting protein 1	protein-coding
68257	chr14	77026721	77028100	+	0	NA	exon (NM_024496, exon 1 of 1)	exon (NM_024496, exon 1 of 1)	1298	NM_024496	64207		NM_024496	ENSG00000119669	IRF2BPL	C14orf4|EAP1|NEDAMSS	interferon regulatory factor 2 binding protein like	protein-coding
78053	chr15	90089151	90089450	+	0	NA	intron (NM_001290114, intron 1 of 8)	MIR|SINE|MIR	-7093	NR_146321	109729181		NR_146321	ENSG00000259291	ZNF710-AS1	-	ZNF710 antisense RNA 1	ncRNA
94352	chr17	28902021	28903490	+	0	NA	intron (NM_144683, intron 1 of 4)	CpG-10910	324	NM_144683	147015		NM_144683	ENSG00000167536	DHRS13	SDR7C5	dehydrogenase/reductase 13	protein-coding
58256	chr12	128811661	128812550	+	0	NA	intron (NM_145648, intron 2 of 7)	intron (NM_145648, intron 2 of 7)	11853	NM_145648	121260		NM_145648	ENSG00000139370	SLC15A4	FP12591|PHT1|PTR4	solute carrier family 15 member 4	protein-coding
68319	chr14	77496821	77497080	+	0	NA	intron (NM_199296, intron 1 of 6)	intron (NM_199296, intron 1 of 6)	1866	NM_199296	145501		NM_182509	ENSG00000100593	ISM2	TAIL1|THSD3	isthmin 2	protein-coding
112233	chr19	5712951	5713780	+	0	NA	intron (NR_076392, intron 3 of 18)	intron (NR_076392, intron 3 of 18)	6781	NM_001276479	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
6954	chr1	31758601	31759580	+	0	NA	promoter-TSS (NR_036216)	promoter-TSS (NR_036216)	-355	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA
120255	chr19	42433551	42434000	+	0	NA	intron (NR_133910, intron 2 of 3)	intron (NR_133910, intron 2 of 3)	-6387	NM_005357	3991		NM_005357	ENSG00000079435	LIPE	AOMS4|FPLD6|HSL|LHS|REH	lipase E, hormone sensitive type	protein-coding
27950	chr10	42083801	42084200	+	0	NA	Intergenic	Intergenic	284045	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
44381	chr11	102577171	102577780	+	0	NA	intron (NM_004771, intron 9 of 9)	intron (NM_004771, intron 9 of 9)	-46728	NM_002423	4316		NM_002423	ENSG00000137673	MMP7	MMP-7|MPSL1|PUMP-1	matrix metallopeptidase 7	protein-coding
104381	chr17	81029501	81029950	+	0	NA	non-coding (NR_026857, exon 2 of 2)	non-coding (NR_026857, exon 2 of 2)	4994	NR_026857	440465		NM_001004336	ENSG00000226137	BAIAP2-DT	BAIAP2-AS1|lnc-BAIAP2	BAIAP2 divergent transcript	ncRNA
40655	chr11	64737951	64738250	+	0	NA	intron (NM_001098670, intron 8 of 16)	L1ME3B|LINE|L1	6042	NM_001098671	10235		NM_005825	ENSG00000068831	RASGRP2	CALDAG-GEFI|CDC25L	RAS guanyl releasing protein 2	protein-coding
82477	chr16	17261371	17261730	+	0	NA	intron (NM_022166, intron 2 of 11)	intron (NM_022166, intron 2 of 11)	127046	NR_135179	102723692		NR_135179	ENSG00000261448	LOC102723692	-	uncharacterized LOC102723692	ncRNA
238633	chrX	153965201	153965830	+	0	NA	intron (NM_005334, intron 1 of 25)	intron (NM_005334, intron 1 of 25)	-3250	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
34450	chr10	132431951	132432750	+	0	NA	Intergenic	Intergenic	-12839	NR_149317	170393		NR_149317		LINC02870	C10orf91	long intergenic non-protein coding RNA 2870	ncRNA
161850	chr3	45734351	45734450	+	0	NA	intron (NM_001319073, intron 14 of 20)	AluSx1|SINE|Alu	45004	NM_001319072	22908		NM_014016	ENSG00000211456	SACM1L	SAC1	SAC1 like phosphatidylinositide phosphatase	protein-coding
101634	chr17	68233551	68233850	+	0	NA	intron (NM_001346472, intron 2 of 7)	intron (NM_001346472, intron 2 of 7)	-13874	NM_001346474	51321		NM_016627	ENSG00000196704	AMZ2	-	archaelysin family metallopeptidase 2	protein-coding
229274	chr9	120574601	120575000	+	0	NA	intron (NM_018249, intron 1 of 37)	intron (NM_018249, intron 1 of 37)	5367	NM_001011649	55755		NM_018249	ENSG00000136861	CDK5RAP2	C48|Cep215|MCPH3	CDK5 regulatory subunit associated protein 2	protein-coding
50613	chr12	48680771	48680930	+	0	NA	intron (NM_017822, intron 2 of 9)	AluSx|SINE|Alu	1388	NM_017822	54934		NM_017822	ENSG00000139620	KANSL2	C12orf41|NSL2	KAT8 regulatory NSL complex subunit 2	protein-coding
114537	chr19	12846301	12846500	+	0	NA	intron (NM_014975, intron 4 of 25)	L2a|LINE|L2	-5860	NR_106852	102466196		NR_106852	ENSG00000276181	MIR6794	hsa-mir-6794	microRNA 6794	ncRNA
8410	chr1	40410971	40411460	+	0	NA	intron (NM_022733, intron 4 of 9)	CR1_Mam|LINE|CR1	14415	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
133917	chr2	130345351	130345900	+	0	NA	exon (NM_001320311, exon 5 of 9)	exon (NM_001320311, exon 5 of 9)	2355	NM_001371731	92856		NM_033416	ENSG00000136718	IMP4	BXDC4	IMP U3 small nucleolar ribonucleoprotein 4	protein-coding
140722	chr2	234435471	234435830	+	0	NA	Intergenic	AluY|SINE|Alu	18945	NR_146988	105373934		NR_146988	ENSG00000231682	LINC01891	-	long intergenic non-protein coding RNA 1891	ncRNA
167354	chr3	128764921	128765180	+	0	NA	intron (NM_004637, intron 1 of 5)	(GGC)n|Simple_repeat|Simple_repeat	38867	NM_004637	7879		NM_004637	ENSG00000075785	RAB7A	CMT2B|PRO2706|RAB7	RAB7A, member RAS oncogene family	protein-coding
203919	chr7	1514751	1515350	+	0	NA	Intergenic	AluJb|SINE|Alu	-10661	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
230881	chr9	129201171	129202050	+	0	NA	Intergenic	Intergenic	-23349	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
39854	chr11	62385921	62386700	+	0	NA	intron (NM_001083926, intron 4 of 6)	MER44A|DNA|TcMar-Tigger	-32723	NM_003357	7356		NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding
136979	chr2	190467801	190468400	+	0	NA	intron (NM_001375987, intron 2 of 6)	intron (NM_001375987, intron 2 of 6)	-1393	NM_001375994	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
206977	chr7	38314751	38315050	+	0	NA	Intergenic	AluSx3|SINE|Alu	-26677	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
101733	chr17	69328571	69328930	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-1617	NM_172232	23461		NM_018672	ENSG00000154265	ABCA5	ABC13|EST90625|HTC3	ATP binding cassette subfamily A member 5	protein-coding
129077	chr2	65102871	65103030	+	0	NA	intron (NM_004161, intron 2 of 5)	Charlie1a|DNA|hAT-Charlie	27156	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
43464	chr11	78094271	78094980	+	0	NA	Intergenic	AluJb|SINE|Alu	-14763	NM_004549	4718		NM_004549	ENSG00000151366	NDUFC2	B14.5b|CI-B14.5b|HLC-1|MC1DN36|NADHDH2	NADH:ubiquinone oxidoreductase subunit C2	protein-coding
5500	chr1	25755871	25756480	+	0	NA	intron (NM_001385185, intron 4 of 10)	MIR|SINE|MIR	-44018	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
154431	chr22	35347671	35347830	+	0	NA	non-coding (NR_024194, exon 15 of 15)	non-coding (NR_024194, exon 15 of 15)	-10951	NR_106717	102464824		NR_106717	ENSG00000274280	MIR6069	hsa-mir-6069	microRNA 6069	ncRNA
179453	chr4	184422971	184423500	+	0	NA	intron (NM_002199, intron 2 of 8)	intron (NM_002199, intron 2 of 8)	-40929	NR_125934	102723766		NR_125933		LINC02362	-	long intergenic non-protein coding RNA 2362	ncRNA
238734	chrX	154271471	154271630	+	0	NA	TTS (NM_001330067).3	TTS (NM_001330067).3	13990	NM_001330067	101060233		NM_001330067	ENSG00000269433	OPN1MW3	GCP|GOP|OPN1MW|OPN1MW2	opsin 1, medium wave sensitive 3	protein-coding
70628	chr14	102818451	102818550	+	0	NA	intron (NM_001199427, intron 1 of 7)	intron (NM_001199427, intron 1 of 7)	41021	NM_145726	7187		NM_003300	ENSG00000131323	TRAF3	CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118	TNF receptor associated factor 3	protein-coding
57874	chr12	123388071	123390380	+	0	NA	intron (NM_001367388, intron 1 of 6)	CpG	314	NM_001367386	387893		NM_020382	ENSG00000183955	KMT5A	PR-Set7|PR/SET07|SET07|SET8|SETD8	lysine methyltransferase 5A	protein-coding
46983	chr12	22171	22330	+	0	NA	intron (NR_130745, intron 2 of 10)	intron (NR_130745, intron 2 of 10)	9765	NR_130745	100288778		NR_130745	ENSG00000226210	WASH8P	-	WAS protein family homolog 8, pseudogene	pseudo
187435	chr5	142075271	142076300	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-32994	NM_030571	80762		NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding
73906	chr15	50694721	50695000	+	0	NA	Intergenic	AluSx|SINE|Alu	-8063	NM_017672	54822		NM_017672	ENSG00000092439	TRPM7	ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK	transient receptor potential cation channel subfamily M member 7	protein-coding
33179	chr10	113093501	113093720	+	0	NA	intron (NM_001146283, intron 5 of 12)	intron (NM_001146283, intron 5 of 12)	-33023	NM_001349871	6934		NM_030756	ENSG00000148737	TCF7L2	TCF-4|TCF4	transcription factor 7 like 2	protein-coding
216498	chr8	20246451	20246750	+	0	NA	3' UTR (NM_001362884, exon 4 of 4)	3' UTR (NM_001362884, exon 4 of 4)	26935	NM_001362884	11178		NM_021020	ENSG00000061337	LZTS1	F37|FEZ1	leucine zipper tumor suppressor 1	protein-coding
62701	chr13	102844071	102844230	+	0	NA	intron (NM_001204425, intron 9 of 22)	AluJb|SINE|Alu	-1882	NM_000123	2073		NM_000123	ENSG00000134899	ERCC5	COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC	ERCC excision repair 5, endonuclease	protein-coding
15235	chr1	149585271	149586450	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	2037	NM_001135789	653598		NM_001135789	ENSG00000288867	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding
126729	chr2	30191071	30191230	+	0	NA	Intergenic	LTR9B|LTR|ERV1	3716	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
220471	chr8	100440271	100441400	+	0	NA	Intergenic	Intergenic	58072	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
103012	chr17	76870551	76870650	+	0	NA	intron (NM_144677, intron 1 of 16)	intron (NM_144677, intron 1 of 16)	-2047	NM_198955	146664		NM_144677	ENSG00000167889	MGAT5B	GnT-IX|GnT-VB	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B	protein-coding
49610	chr12	27710001	27711400	+	0	NA	promoter-TSS (NM_021821)	promoter-TSS (NM_021821)	-73	NM_001190864	60488		NM_021821	ENSG00000061794	MRPS35	HDCMD11P|MDS023|MRP-S28|MRPS28|mS35	mitochondrial ribosomal protein S35	protein-coding
3050	chr1	12156821	12158000	+	0	NA	Intergenic	L1M5|LINE|L1	-9533	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
83492	chr16	27416121	27416580	+	0	NA	intron (NM_181079, intron 2 of 9)	AluSx3|SINE|Alu	-10921	NM_021798	50615		NM_021798	ENSG00000103522	IL21R	CD360|IMD56|NILR	interleukin 21 receptor	protein-coding
236072	chrX	56726521	56726880	+	0	NA	Intergenic	Intergenic	-2543	NM_001348129	550643		NM_001348129	ENSG00000204272	NBDY	LINC01420|NoBody	negative regulator of P-body association	protein-coding
198857	chr6	109378351	109378530	+	0	NA	intron (NM_001142401, intron 2 of 4)	intron (NM_001142401, intron 2 of 4)	3299	NM_001346500	8763		NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding
109722	chr19	1080701	1080900	+	0	NA	intron (NM_012292, intron 16 of 22)	CpG-12984	4166	NM_001282334	23526		NM_012292	ENSG00000180448	ARHGAP45	HA-1|HLA-HA1|HMHA1	Rho GTPase activating protein 45	protein-coding
144430	chr20	35448201	35448750	+	0	NA	intron (NM_001319138, intron 1 of 3)	AluSz6|SINE|Alu	5622	NR_031620	100302125		NR_031620	ENSG00000221763	MIR1289-1	MIRN1289-1|hsa-mir-1289-1	microRNA 1289-1	ncRNA
2292	chr1	8964551	8965400	+	0	NA	intron (NM_001270502, intron 3 of 5)	AluSx|SINE|Alu	19107	NM_001270501	765		NM_001215	ENSG00000131686	CA6	CA-VI|GUSTIN	carbonic anhydrase 6	protein-coding
89772	chr16	89467301	89467980	+	0	NA	intron (NM_001256182, intron 1 of 13)	AluJr|SINE|Alu	22921	NM_001256182	29123		NM_013275	ENSG00000167522	ANKRD11	ANCO-1|ANCO1|LZ16|T13	ankyrin repeat domain containing 11	protein-coding
160032	chr3	18427871	18428350	+	0	NA	intron (NM_001322874, intron 1 of 10)	MSTC|LTR|ERVL-MaLR	-2771	NM_001195470	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
119405	chr19	40261951	40262650	+	0	NA	intron (NM_001243028, intron 1 of 12)	MIR|SINE|MIR	3051	NM_001330511	208		NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding
81926	chr16	11756921	11757400	+	0	NA	intron (NM_014153, intron 20 of 22)	MER20|DNA|hAT-Charlie	-14303	NR_136671	51061		NM_015914	ENSG00000153066	TXNDC11	EFP1	thioredoxin domain containing 11	protein-coding
186814	chr5	139386671	139387180	+	0	NA	TTS (NM_016459)	TTS (NM_016459)	2988	NM_016459	51237		NM_016459	ENSG00000170476	MZB1	MEDA-7|PACAP|pERp1	marginal zone B and B1 cell specific protein	protein-coding
190282	chr5	179559171	179560730	+	0	NA	5' UTR (NM_001040451, exon 1 of 17).2	5' UTR (NM_001040451, exon 1 of 17).2	219	NM_001040451	80230		NM_025158	ENSG00000176783	RUFY1	RABIP4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
166692	chr3	120555821	120556080	+	0	NA	Intergenic	Intergenic	-40386	NM_004547	4710		NM_004547	ENSG00000065518	NDUFB4	B15|CI-B15	NADH:ubiquinone oxidoreductase subunit B4	protein-coding
32022	chr10	101011551	101012130	+	0	NA	intron (NM_001195263, intron 13 of 16)	intron (NM_001195263, intron 13 of 16)	9343	NM_001318101	84445		NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding
29294	chr10	69293601	69293800	+	0	NA	intron (NM_001322365, intron 5 of 22)	MLT1H|LTR|ERVL-MaLR	15204	NM_001358263	3098		NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|NEDVIBA|NMSR|RP79|hexokinase	hexokinase 1	protein-coding
197050	chr6	53429201	53429600	+	0	NA	Intergenic	L2c|LINE|L2	-80221	NM_001242830	60481		NM_021814	ENSG00000012660	ELOVL5	HELO1|SCA38|dJ483K16.1	ELOVL fatty acid elongase 5	protein-coding
106238	chr18	11972141	11972330	+	0	NA	Intergenic	AluYa5|SINE|Alu	-9272	NM_014214	3613		NM_014214	ENSG00000141401	IMPA2	-	inositol monophosphatase 2	protein-coding
138710	chr2	213131821	213132080	+	0	NA	intron (NM_001371277, intron 3 of 6)	L2c|LINE|L2	18487	NM_016260	22807		NM_016260	ENSG00000030419	IKZF2	ANF1A2|HELIOS|ZNF1A2|ZNFN1A2	IKAROS family zinc finger 2	protein-coding
204211	chr7	2516651	2517330	+	0	NA	promoter-TSS (NM_002304)	promoter-TSS (NM_002304)	-873	NM_002304	3955		NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
6282	chr1	27601951	27602700	+	0	NA	intron (NM_001029882, intron 1 of 6)	(TCCCGC)n|Simple_repeat|Simple_repeat	1169	NM_001029882	27245		NM_001029882	ENSG00000126705	AHDC1	MRD25|XIGIS	AT-hook DNA binding motif containing 1	protein-coding
190913	chr6	2843051	2843630	+	0	NA	Intergenic	MLT1A1-int|LTR|ERVL-MaLR	-1477	NM_030666	1992		NM_030666	ENSG00000021355	SERPINB1	EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2	serpin family B member 1	protein-coding
94506	chr17	29388851	29389150	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-1363	NM_020791	57551		NM_020791	ENSG00000160551	TAOK1	DDIB|KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1	TAO kinase 1	protein-coding
26573	chr10	21797851	21798780	+	0	NA	intron (NM_022365, intron 9 of 11)	L2a|LINE|L2	205415	NM_022365	64215		NM_022365	ENSG00000136770	DNAJC1	DNAJL1|ERdj1|HTJ1|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding
216466	chr8	19686771	19687350	+	0	NA	intron (NM_001354476, intron 1 of 8)	intron (NM_001354476, intron 1 of 8)	-4299	NR_024040	55790		NM_018371	ENSG00000147408	CSGALNACT1	CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
232500	chr9	136262621	136263500	+	0	NA	intron (NM_001378188, intron 18 of 25)	intron (NM_001378188, intron 18 of 25)	-17248	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
85700	chr16	56576901	56577480	+	0	NA	Intergenic	Intergenic	12117	NM_032935	84560		NM_032935	ENSG00000102891	MT4	MT-4|MT-IV|MTIV	metallothionein 4	protein-coding
226643	chr9	74497871	74498030	+	0	NA	5' UTR (NM_006914, exon 1 of 10)	5' UTR (NM_006914, exon 1 of 10)	603	NR_125791	103752585		NR_125791		RORB-AS1	-	RORB antisense RNA 1	ncRNA
84183	chr16	29823971	29824600	+	0	NA	intron (NM_005115, intron 1 of 14)	intron (NM_005115, intron 1 of 14)	3823	NM_005115	9961		NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding
214764	chr7	151079921	151081250	+	0	NA	TTS (NM_001136044)	TTS (NM_001136044)	224	NM_006712	10922		NM_006712	ENSG00000164896	FASTK	FAST	Fas activated serine/threonine kinase	protein-coding
196326	chr6	43141671	43142600	+	0	NA	intron (NR_072998, intron 12 of 18)	intron (NR_072998, intron 12 of 18)	-29134	NM_003131	6722		NM_003131	ENSG00000112658	SRF	MCM1	serum response factor	protein-coding
193495	chr6	30558571	30558980	+	0	NA	intron (NM_025263, intron 2 of 3).3	L1MB2|LINE|L1	-1181	NM_005275	2794		NM_005275	ENSG00000204590	GNL1	HSR1	G protein nucleolar 1 (putative)	protein-coding
78761	chr15	99106431	99106930	+	0	NA	intron (NM_145728, intron 1 of 3)	intron (NM_145728, intron 1 of 3)	1600	NM_145728	23336		NM_015286	ENSG00000182253	SYNM	DMN|SYN	synemin	protein-coding
131780	chr2	98486121	98487180	+	0	NA	intron (NM_001351429, intron 1 of 23)	intron (NM_001351429, intron 1 of 23)	40640	NM_001351429	3631		NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding
210152	chr7	98248221	98248650	+	0	NA	intron (NM_015395, intron 2 of 25)	intron (NM_015395, intron 2 of 25)	3797	NM_015395	25851		NM_015395	ENSG00000205356	TECPR1	-	tectonin beta-propeller repeat containing 1	protein-coding
55083	chr12	96909951	96910050	+	0	NA	intron (NM_152905, intron 3 of 15)	intron (NM_152905, intron 3 of 15)	2534	NM_001135175	121441		NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	NEDD1 gamma-tubulin ring complex targeting factor	protein-coding
122259	chr19	49050401	49050800	+	0	NA	Intergenic	Intergenic	-1489	NM_033183	94115		NM_033183	ENSG00000213030	CGB8	-	chorionic gonadotropin subunit beta 8	protein-coding
201610	chr6	149368101	149368500	+	0	NA	intron (NM_001369506, intron 2 of 7)	L2-3_Crp|LINE|L2	-31962	NM_001002255	387082		NM_001002255	ENSG00000177688	SUMO4	IDDM5|SMT3H4|SUMO-4|dJ281H8.4	small ubiquitin like modifier 4	protein-coding
84728	chr16	30926271	30927000	+	0	NA	intron (NM_001382781, intron 2 of 10)	intron (NM_001382781, intron 2 of 10)	2060	NM_001099784	54620		NM_019085	ENSG00000099364	FBXL19	CXXC11|Fbl19|JHDM1C	F-box and leucine rich repeat protein 19	protein-coding
86445	chr16	66922671	66923330	+	0	NA	intron (NM_004165, intron 4 of 4)	intron (NM_004165, intron 4 of 4)	2535	NM_004165	6236		NM_004165	ENSG00000166592	RRAD	RAD|RAD1|REM3	RRAD, Ras related glycolysis inhibitor and calcium channel regulator	protein-coding
101116	chr17	65020271	65020700	+	0	NA	intron (NM_001282425, intron 2 of 3)	intron (NM_001282425, intron 2 of 3)	35289	NM_001282425	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
224446	chr9	15416721	15417180	+	0	NA	Intergenic	Intergenic	-5834	NM_001039697	6619		NM_003084	ENSG00000164975	SNAPC3	PTFbeta|SNAP50	small nuclear RNA activating complex polypeptide 3	protein-coding
163809	chr3	52428451	52429000	+	0	NA	Intergenic	Intergenic	16378	NM_020163	56920		NM_020163	ENSG00000010319	SEMA3G	sem2	semaphorin 3G	protein-coding
208569	chr7	72831751	72831850	+	0	NA	intron (NR_024111, intron 2 of 3)	intron (NR_024111, intron 2 of 3)	2427	NR_024110	155370		NR_001588	ENSG00000291152	SBDSP1	SBDSP	SBDS pseudogene 1	pseudo
123367	chr19	53892871	53893430	+	0	NA	intron (NM_001316329, intron 8 of 18)	intron (NM_001316329, intron 8 of 18)	10953	NM_002739	5582		NM_002739	ENSG00000126583	PRKCG	PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14	protein kinase C gamma	protein-coding
138567	chr2	207710951	207712830	+	0	NA	5' UTR (NM_001142300, exon 1 of 8)	5' UTR (NM_001142300, exon 1 of 8)	250	NM_001330218	151195		NM_152523	ENSG00000163249	CCNYL1	-	cyclin Y like 1	protein-coding
41152	chr11	65598671	65598830	+	0	NA	intron (NM_002419, intron 9 of 9)	intron (NM_002419, intron 9 of 9)	-2950	NM_033348	10089		NM_005714	ENSG00000173338	KCNK7	K2p7.1|TWIK3	potassium two pore domain channel subfamily K member 7	protein-coding
24502	chr1	244448701	244448980	+	0	NA	intron (NM_001365073, intron 1 of 12)	L2c|LINE|L2	3069	NM_001126	159		NM_001126	ENSG00000035687	ADSS2	ADEH|ADSS|ADSS 2	adenylosuccinate synthase 2	protein-coding
4690	chr1	23020901	23021300	+	0	NA	intron (NM_015013, intron 1 of 18)	intron (NM_015013, intron 1 of 18)	1632	NM_001009999	23028		NM_015013	ENSG00000004487	KDM1A	AOF2|BHC110|CPRF|KDM1|LSD1	lysine demethylase 1A	protein-coding
73337	chr15	41973971	41974330	+	0	NA	intron (NR_120334, intron 2 of 3)	MIRb|SINE|MIR	1387	NR_120334	101928388		NR_120334	ENSG00000246740	PLA2G4E-AS1	-	PLA2G4E antisense RNA 1	ncRNA
72857	chr15	40257801	40258200	+	0	NA	intron (NM_001128628, intron 3 of 10)	intron (NM_001128628, intron 3 of 10)	4822	NM_001276717	56924		NM_020168	ENSG00000137843	PAK6	PAK5	p21 (RAC1) activated kinase 6	protein-coding
42556	chr11	71796301	71796780	+	0	NA	intron (NR_073388, intron 3 of 3)	intron (NR_073388, intron 3 of 3)	17319	NR_073388	285407		NR_073386	ENSG00000293546	ALG1L9P	-	ALG1 like 9, pseudogene	pseudo
202493	chr6	158308601	158308800	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	-3765	NM_020245	56995		NM_020245	ENSG00000130338	TULP4	TUSP	TUB like protein 4	protein-coding
108186	chr18	63079251	63079430	+	0	NA	Intergenic	LTR33B|LTR|ERVL	240429	NM_000633	596		NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2 apoptosis regulator	protein-coding
67850	chr14	74020571	74020730	+	0	NA	intron (NM_025057, intron 1 of 11)	AluSq2|SINE|Alu	1301	NM_025057	80127		NM_025057	ENSG00000119636	BBOF1	C14orf45|CCDC176|FBB10	basal body orientation factor 1	protein-coding
227154	chr9	86340451	86340750	+	0	NA	intron (NM_024617, intron 7 of 26)	intron (NM_024617, intron 7 of 26)	13810	NM_001185074	79670		NM_024617	ENSG00000083223	TUT7	PAPD6|TENT3B|ZCCHC6	terminal uridylyl transferase 7	protein-coding
54249	chr12	83004721	83004980	+	0	NA	intron (NM_152588, intron 8 of 11)	AluSz|SINE|Alu	317695	NM_001320322	160335		NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane O-mannosyltransferase targeting cadherins 2	protein-coding
217101	chr8	24632121	24632200	+	0	NA	Intergenic	Intergenic	-83542	NR_125808	101929294		NR_125808		ADAM7-AS1	-	ADAM7, ADAMDEC1 and ADAM28 antisense RNA 1	ncRNA
69713	chr14	98200671	98200830	+	0	NA	Intergenic	Intergenic	-222626	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
208680	chr7	73229821	73230080	+	0	NA	non-coding (NR_003186, exon 4 of 8)	non-coding (NR_003186, exon 4 of 8)	9311	NR_003186	654816		NR_003186	ENSG00000290838	NCF1B	NCF-1B|SH3PXD1B	neutrophil cytosolic factor 1B (pseudogene)	pseudo
55276	chr12	102951171	102951330	+	0	NA	intron (NM_001354304, intron 1 of 13)	intron (NM_001354304, intron 1 of 13)	-6424	NM_004316	429		NM_004316	ENSG00000139352	ASCL1	ASH1|HASH1|MASH1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding
30583	chr10	80132521	80133130	+	0	NA	promoter-TSS (NM_001331125)	promoter-TSS (NM_001331125)	95	NM_001331125	219348		NM_001012973	ENSG00000189129	PLAC9	-	placenta associated 9	protein-coding
214663	chr7	150924101	150924600	+	0	NA	Intergenic	Intergenic	31454	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
135893	chr2	171160401	171161850	+	0	NA	promoter-TSS (NM_012290)	promoter-TSS (NM_012290)	-232	NM_012290	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
226744	chr9	76021401	76021600	+	0	NA	intron (NM_006200, intron 3 of 20)	intron (NM_006200, intron 3 of 20)	130827	NR_120409	5125		NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding
168441	chr3	142826921	142827000	+	0	NA	intron (NM_013363, intron 6 of 8)	L2|LINE|L2	62123	NM_013363	26577		NM_013363	ENSG00000163710	PCOLCE2	PCPE2	procollagen C-endopeptidase enhancer 2	protein-coding
6611	chr1	28878401	28879200	+	0	NA	Intergenic	Intergenic	-8291	NM_203342	2035		NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding
228028	chr9	95883401	95883600	+	0	NA	intron (NM_001375291, intron 2 of 18)	intron (NM_001375291, intron 2 of 18)	-7523	NR_023389	100128782		NR_023389	ENSG00000175611	ERCC6L2-AS1	C9orf130|LINC00476|NAG11|NAG12	ERCC6L2 antisense RNA 1	ncRNA
19219	chr1	172535351	172535830	+	0	NA	intron (NM_001282751, intron 1 of 21)	intron (NM_001282751, intron 1 of 21)	2440	NM_001282750	51430		NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding
118111	chr19	34499871	34500650	+	0	NA	exon (NM_001080436, exon 8 of 8)	exon (NM_001080436, exon 8 of 8)	18502	NM_001080436	126374		NM_001080436	ENSG00000142279	WTIP	-	WT1 interacting protein	protein-coding
47960	chr12	6865871	6866410	+	0	NA	non-coding (NR_168449, exon 20 of 20)	non-coding (NR_168449, exon 20 of 20)	-1280	NM_001159287	7167		NM_000365	ENSG00000111669	TPI1	HEL-S-49|TIM|TPI|TPID	triosephosphate isomerase 1	protein-coding
158191	chr22	50236301	50236500	+	0	NA	intron (NM_020461, intron 2 of 24)	AluY|SINE|Alu	8623	NM_020461	85378		NM_020461	ENSG00000128159	TUBGCP6	GCP-6|GCP6|MCCRP|MCCRP1|MCPHCR	tubulin gamma complex component 6	protein-coding
173701	chr4	15702971	15704250	+	0	NA	intron (NM_004334, intron 1 of 8)	intron (NM_004334, intron 1 of 8)	545	NM_004334	683		NM_004334	ENSG00000109743	BST1	CD157|cADPR2	bone marrow stromal cell antigen 1	protein-coding
161782	chr3	45034421	45035230	+	0	NA	intron (NM_001308394, intron 2 of 2)	intron (NM_001308394, intron 2 of 2)	4682	NM_001308394	7123		NM_003278	ENSG00000163815	CLEC3B	MCDR4|TN|TNA	C-type lectin domain family 3 member B	protein-coding
20665	chr1	200279801	200280030	+	0	NA	Intergenic	Intergenic	93877	NR_040064	554279		NR_040064	ENSG00000203721	LINC00862	C1orf98|SMIM16	long intergenic non-protein coding RNA 862	ncRNA
109895	chr19	1273201	1273630	+	0	NA	TTS (NM_001280)	TTS (NM_001280)	-2115	NM_017914	55009		NM_017914	ENSG00000228300	FAM174C	C19orf24	family with sequence similarity 174 member C	protein-coding
185710	chr5	132019371	132020730	+	0	NA	Intergenic	Intergenic	-7982	NM_001205250	23305		NM_015256	ENSG00000164398	ACSL6	ACS2|FACL6|LACS 6|LACS2|LACS5	acyl-CoA synthetase long chain family member 6	protein-coding
191562	chr6	11730721	11730980	+	0	NA	intron (NM_032744, intron 4 of 5)	intron (NM_032744, intron 4 of 5)	47953	NM_032744	84830		NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding
159203	chr3	12883351	12883830	+	0	NA	intron (NR_136189, intron 1 of 2)	LTR12C|LTR|ERV1	1621	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
230014	chr9	127084621	127084880	+	0	NA	intron (NM_001190729, intron 8 of 17)	intron (NM_001190729, intron 8 of 17)	37885	NM_012098	23452		NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding
123861	chr19	55256921	55257380	+	0	NA	intron (NM_014931, intron 1 of 23)	intron (NM_014931, intron 1 of 23)	1867	NM_014931	22870		NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding
31558	chr10	97218121	97218380	+	0	NA	intron (NR_037909, intron 11 of 14)	intron (NR_037909, intron 11 of 14)	-32291	NM_003061	6585		NM_003061	ENSG00000187122	SLIT1	MEGF4|SLIL1|SLIT-1|SLIT3	slit guidance ligand 1	protein-coding
53362	chr12	64660851	64661500	+	0	NA	intron (NR_040718, intron 1 of 3)	MIRb|SINE|MIR	-38570	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
47995	chr12	6916651	6917150	+	0	NA	intron (NM_001975, intron 4 of 11)	intron (NM_001975, intron 4 of 11)	2320	NM_001975	2026		NM_001975	ENSG00000111674	ENO2	HEL-S-279|NSE	enolase 2	protein-coding
154368	chr22	33577971	33578130	+	0	NA	intron (NM_133642, intron 5 of 14)	intron (NM_133642, intron 5 of 14)	-5788	NM_001378630	9215		NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding
206808	chr7	36969321	36969830	+	0	NA	intron (NM_014800, intron 16 of 21)	intron (NM_014800, intron 16 of 21)	15537	NM_001039459	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
67418	chr14	70223421	70223680	+	0	NA	intron (NR_135825, intron 2 of 3)	MER61B|LTR|ERV1	24251	NR_003951	145241		NR_003951	ENSG00000293335	ADAM21P1	ADAM21P	ADAM metallopeptidase domain 21 pseudogene 1	pseudo
8156	chr1	39413001	39413230	+	0	NA	exon (NM_015038, exon 1 of 1)	exon (NM_015038, exon 1 of 1)	4042	NM_015038	23499		NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|KIAA0754|LIS9|Lnc-PMIF|MACF|OFC4	microtubule actin crosslinking factor 1	protein-coding
15313	chr1	149862701	149863380	+	0	NA	Intergenic	L2c|LINE|L2	-1881	NM_003548	8370		NM_003548	ENSG00000270882	H4C14	FO108|H4|H4-16|H4/n|H4C1|H4C11|H4C12|H4C13|H4C15|H4C16|H4C2|H4C3|H4C4|H4C5|H4C6|H4C8|H4C9|H4F2|H4FN|HIST2H4|HIST2H4A	H4 clustered histone 14	protein-coding
20690	chr1	200558851	200559150	+	0	NA	intron (NM_001305792, intron 25 of 27)	intron (NM_001305792, intron 25 of 27)	59838	NM_001305792	9928		NM_014875	ENSG00000118193	KIF14	MCPH20|MKS12	kinesin family member 14	protein-coding
102385	chr17	75575671	75576030	+	0	NA	TTS (NM_001031803)	TTS (NM_001031803)	-12208	NM_001309242	80022		NM_001080847	ENSG00000266714	MYO15B	MYO15BP	myosin XVB	protein-coding
168712	chr3	150722721	150723180	+	0	NA	Intergenic	MARNA|DNA|TcMar-Mariner	16035	NR_121657	101928105		NR_121657		LOC101928105	-	uncharacterized LOC101928105	ncRNA
104506	chr17	81227501	81228300	+	0	NA	promoter-TSS (NR_135654)	promoter-TSS (NR_135654)	-807	NR_135654	105371925		NR_135654		LOC105371925	-	uncharacterized LOC105371925	ncRNA
73139	chr15	41368221	41368680	+	0	NA	intron (NM_001243144, intron 6 of 8)	intron (NM_001243144, intron 6 of 8)	34046	NR_045620	51103		NM_016013	ENSG00000137806	NDUFAF1	CGI-65|CGI65|CIA30|MC1DN11	NADH:ubiquinone oxidoreductase complex assembly factor 1	protein-coding
111181	chr19	3370121	3370580	+	0	NA	intron (NM_001245002, intron 1 of 10)	(CT)n|Simple_repeat|Simple_repeat	3767	NM_001245004	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
52698	chr12	56521071	56521900	+	0	NA	promoter-TSS (NM_002898)	promoter-TSS (NM_002898)	-335	NM_002898	5939		NM_002898	ENSG00000076067	RBMS2	SCR3	RNA binding motif single stranded interacting protein 2	protein-coding
93236	chr17	17853901	17854100	+	0	NA	intron (NM_001082968, intron 12 of 14)	intron (NM_001082968, intron 12 of 14)	-16989	NM_004176	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
55756	chr12	108518251	108518550	+	0	NA	exon (NM_007076, exon 3 of 3)	exon (NM_007076, exon 3 of 3)	3123	NM_007076	11153		NM_007076	ENSG00000198855	FICD	HIP13|HYPE|UNQ3041	FIC domain protein adenylyltransferase	protein-coding
236196	chrX	65672901	65673500	+	0	NA	intron (NM_002444, intron 1 of 12)	intron (NM_002444, intron 1 of 12)	5546	NM_002444	4478		NM_002444	ENSG00000147065	MSN	HEL70|IMD50	moesin	protein-coding
2963	chr1	11924301	11924900	+	0	NA	intron (NM_138346, intron 1 of 2)	intron (NM_138346, intron 1 of 2)	1827	NM_138346	90231		NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
117063	chr19	19031751	19032800	+	0	NA	intron (NR_147915, intron 1 of 11)	AluSx1|SINE|Alu	1242	NR_147914	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
100083	chr17	58306751	58307050	+	0	NA	exon (NM_024418, exon 24 of 31)	exon (NM_024418, exon 24 of 31)	-18550	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
148190	chr20	63549051	63549380	+	0	NA	Intergenic	(CCC)n|Simple_repeat|Simple_repeat	-1711	NM_080823	6725		NM_080823	ENSG00000125508	SRMS	C20orf148|PTK70|SRM|dJ697K14.1	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding
136690	chr2	181125451	181125800	+	0	NA	intron (NR_130784, intron 1 of 4)	L2a|LINE|L2	1788	NR_130784	101927156		NR_130784		LINC01934	-	long intergenic non-protein coding RNA 1934	ncRNA
136946	chr2	190320771	190321000	+	0	NA	Intergenic	MIRb|SINE|MIR	-1059	NM_014362	26275		NM_014362	ENSG00000198130	HIBCH	HIBYLCOAH	3-hydroxyisobutyryl-CoA hydrolase	protein-coding
185567	chr5	131378971	131380400	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	115632	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
123955	chr19	55397501	55398130	+	0	NA	intron (NM_001363697, intron 4 of 4)	FLAM_A|SINE|Alu	4842	NR_145781	109623451		NR_145781		SNORD157	-	small nucleolar RNA, C/D box 157	snoRNA
140895	chr2	237676051	237676150	+	0	NA	intron (NM_001137550, intron 1 of 23)	L1MB3|LINE|L1	-16064	NM_001137551	9208		NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
87267	chr16	69991501	69991700	+	0	NA	intron (NR_003610, intron 18 of 25)	intron (NR_003610, intron 18 of 25)	-38746	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
40722	chr11	64807201	64807530	+	0	NA	intron (NM_001370259, intron 4 of 9)	MIRc|SINE|MIR	3186	NM_001370262	4221		NM_000244	ENSG00000133895	MEN1	MEAI|SCG2	menin 1	protein-coding
191475	chr6	11153971	11154500	+	0	NA	Intergenic	L1MEg|LINE|L1	-42510	NM_207582	405754		NM_207582	ENSG00000244476	ERVFRD-1	ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD	endogenous retrovirus group FRD member 1, envelope	protein-coding
194156	chr6	32045071	32045430	+	0	NA	exon (NM_001365276, exon 32 of 44).4	exon (NM_001365276, exon 32 of 44).4	878	NM_032470	7148		NM_019105	ENSG00000168477	TNXB	EDS3|EDSCLL|EDSCLL1|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|VUR8|XB|XBS	tenascin XB	protein-coding
198678	chr6	107956301	107957500	+	0	NA	intron (NM_007214, intron 1 of 20)	intron (NM_007214, intron 1 of 20)	1308	NM_007214	11231		NM_007214	ENSG00000025796	SEC63	DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L	SEC63 homolog, protein translocation regulator	protein-coding
23454	chr1	228471671	228472100	+	0	NA	Intergenic	AluJr|SINE|Alu	9811	NR_039812	100616308		NR_039812	ENSG00000266174	MIR4666A	MIR4666|hsa-mir-4666a	microRNA 4666a	ncRNA
48336	chr12	9198171	9198330	+	0	NA	intron (NM_002864, intron 7 of 35)	AluJr4|SINE|Alu	10145	NM_002864	5858		NM_002864	ENSG00000126838	PZP	CPAMD6	PZP alpha-2-macroglobulin like	protein-coding
12900	chr1	110399851	110400550	+	0	NA	Intergenic	AluY|SINE|Alu	7494	NM_001382293	10542		NM_006402	ENSG00000134248	LAMTOR5	HBXIP|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding
225840	chr9	38008171	38009130	+	0	NA	intron (NM_003028, intron 2 of 5)	MIR3|SINE|MIR	60577	NM_003028	6461		NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding
152435	chr22	20587421	20588580	+	0	NA	TTS (NM_001293237)	TTS (NM_001293237)	79953	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
139594	chr2	224987771	224988150	+	0	NA	intron (NM_014689, intron 1 of 55)	MIRb|SINE|MIR	-5533	NM_001363762	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
171930	chr4	869821	870480	+	0	NA	intron (NM_001318134, intron 16 of 24)	(CACA)n|Simple_repeat|Simple_repeat	-44021	NM_006651	10815		NM_006651	ENSG00000168993	CPLX1	CPX-I|CPX1|DEE63|EIEE63	complexin 1	protein-coding
225375	chr9	34988901	34990730	+	0	NA	promoter-TSS (NM_001349723)	promoter-TSS (NM_001349723)	70	NM_012266	25822		NM_012266	ENSG00000137094	DNAJB5	Hsc40	DnaJ heat shock protein family (Hsp40) member B5	protein-coding
123605	chr19	54502621	54503000	+	0	NA	promoter-TSS (NM_002288)	promoter-TSS (NM_002288)	-21	NM_002288	3904		NM_002288	ENSG00000167618	LAIR2	CD306	leukocyte associated immunoglobulin like receptor 2	protein-coding
197444	chr6	73739071	73739730	+	0	NA	intron (NM_001159588, intron 4 of 31)	intron (NM_001159588, intron 4 of 31)	43197	NM_133493	135228		NM_133493	ENSG00000156535	CD109	CPAMD7|p180|r150	CD109 molecule	protein-coding
18735	chr1	167474011	167475130	+	0	NA	intron (NM_198053, intron 1 of 7)	L1MC5|LINE|L1	43959	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
188893	chr5	160006251	160006550	+	0	NA	Intergenic	Intergenic	-2700	NM_001282500	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
61607	chr13	73520521	73520780	+	0	NA	Intergenic	Intergenic	-43594	NR_047009	100874155		NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
214286	chr7	149067301	149067500	+	0	NA	Intergenic	LTR54|LTR|ERV1	23318	NM_152411	136051		NM_152411	ENSG00000197362	ZNF786	-	zinc finger protein 786	protein-coding
149083	chr21	15749901	15750130	+	0	NA	intron (NM_001352560, intron 1 of 23)	MER21C|LTR|ERVL	20033	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
642	chr1	1345351	1345880	+	0	NA	intron (NM_004421, intron 1 of 14)	intron (NM_004421, intron 1 of 14)	3803	NM_004421	1855		NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding
237700	chrX	124377671	124377830	+	0	NA	3' UTR (NM_014253, exon 31 of 31)	3' UTR (NM_014253, exon 31 of 31)	31187	NM_002351	4068		NM_002351	ENSG00000183918	SH2D1A	DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1	SH2 domain containing 1A	protein-coding
23232	chr1	227764001	227764400	+	0	NA	intron (NR_136654, intron 2 of 3)	intron (NR_136654, intron 2 of 3)	-22612	NR_168381	105373289		NR_168380	ENSG00000286389	LOC105373289	-	LOC105373289	ncRNA
200219	chr6	131445151	131445250	+	0	NA	Intergenic	L1PA7|LINE|L1	-128026	NR_160934	383		NM_000045	ENSG00000118520	ARG1	-	arginase 1	protein-coding
130217	chr2	84705901	84706100	+	0	NA	intron (NM_001370, intron 52 of 76)	intron (NM_001370, intron 52 of 76)	175084	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
142899	chr20	17964771	17965260	+	0	NA	intron (NM_001282454, intron 1 of 12)	intron (NM_001282454, intron 1 of 12)	-2069	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
75261	chr15	64987801	64988200	+	0	NA	intron (NM_001127890, intron 1 of 7)	AluSq2|SINE|Alu	1470	NM_001127889	51324		NM_016630	ENSG00000090487	SPG21	ABHD21|ACP33|BM-019|GL010|MAST	SPG21 abhydrolase domain containing, maspardin	protein-coding
71269	chr14	105230321	105230880	+	0	NA	intron (NM_001242789, intron 1 of 12)	intron (NM_001242789, intron 1 of 12)	17285	NM_145685	2972		NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1 RNA polymerase III transcription initiation factor subunit	protein-coding
91166	chr17	3790051	3790550	+	0	NA	intron (NM_002208, intron 1 of 30)	AluSx|SINE|Alu	10888	NM_002208	3682		NM_002208	ENSG00000083457	ITGAE	CD103|HUMINAE	integrin subunit alpha E	protein-coding
88200	chr16	81795971	81796380	+	0	NA	intron (NM_002661, intron 2 of 32)	intron (NM_002661, intron 2 of 32)	16884	NM_002661	5336		NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding
173639	chr4	13528151	13528550	+	0	NA	intron (NR_034054, intron 2 of 3)	intron (NR_034054, intron 2 of 3)	3067	NR_034054	285547		NR_034054	ENSG00000281202	LINC01097	-	long intergenic non-protein coding RNA 1097	ncRNA
92562	chr17	8994171	8994530	+	0	NA	Intergenic	MER74A|LTR|ERVL	-27160	NM_004822	9423		NM_004822	ENSG00000065320	NTN1	MRMV4|NET1|NTN1L	netrin 1	protein-coding
89434	chr16	88943021	88943650	+	0	NA	intron (NR_168285, intron 1 of 1)	intron (NR_168285, intron 1 of 1)	-1985	NM_175931	863		NM_005187	ENSG00000129993	CBFA2T3	ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein-coding
63015	chr13	112712071	112712230	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	21821	NM_015205	23250		NM_015205	ENSG00000068650	ATP11A	ATPIH|ATPIS|AUNA2|DFNA84|HLD24	ATPase phospholipid transporting 11A	protein-coding
33377	chr10	117374901	117376930	+	0	NA	promoter-TSS (NM_173791)	promoter-TSS (NM_173791)	-475	NM_173791	118987		NM_173791	ENSG00000165650	PDZD8	IDDADF|PDZK8	PDZ domain containing 8	protein-coding
131852	chr2	98690071	98690430	+	0	NA	intron (NM_012214, intron 2 of 15)	L1MDa|LINE|L1	-26777	NM_001160154	11320		NM_012214	ENSG00000071073	MGAT4A	GNT-IV|GNT-IVA|GnT-4a	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein-coding
198351	chr6	105179451	105180100	+	0	NA	intron (NM_022361, intron 1 of 3)	CpG	239	NM_022361	64208		NM_022361	ENSG00000132429	POPDC3	LGMDR26|POP3|bA355M14.1	popeye domain containing 3	protein-coding
150439	chr21	42439401	42440400	+	0	NA	intron (NM_001243467, intron 10 of 11)	(CA)n|Simple_repeat|Simple_repeat	35998	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
149389	chr21	31117301	31117500	+	0	NA	Intergenic	Intergenic	43540	NM_001353684	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
70446	chr14	102050351	102050450	+	0	NA	intron (NM_001376, intron 77 of 77)	intron (NM_001376, intron 77 of 77)	36644	NM_005348	3320		NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding
155767	chr22	39231801	39232000	+	0	NA	intron (NM_033016, intron 3 of 6)	intron (NM_033016, intron 3 of 6)	9009	NM_033016	5155		NM_002608	ENSG00000100311	PDGFB	IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis	platelet derived growth factor subunit B	protein-coding
178528	chr4	150976871	150977030	+	0	NA	intron (NM_001367550, intron 2 of 56)	L1M1|LINE|L1	38317	NM_001199282	987		NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA|uc.147	LPS responsive beige-like anchor protein	protein-coding
212803	chr7	130303571	130303730	+	0	NA	intron (NM_016352, intron 4 of 10)	AluJb|SINE|Alu	10489	NM_016352	51200		NM_016352	ENSG00000128510	CPA4	CPA3	carboxypeptidase A4	protein-coding
145497	chr20	43951521	43951980	+	0	NA	intron (NM_001098798, intron 1 of 7)	AluJr|SINE|Alu	5854	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
56340	chr12	112961271	112961430	+	0	NA	intron (NM_006187, intron 8 of 15)	intron (NM_006187, intron 8 of 15)	-17169	NM_001032731	4939		NM_002535	ENSG00000111335	OAS2	-	2'-5'-oligoadenylate synthetase 2	protein-coding
89252	chr16	88653201	88653400	+	0	NA	exon (NM_002461, exon 9 of 10)	exon (NM_002461, exon 9 of 10)	-2247	NM_000101	1535		NM_000101	ENSG00000051523	CYBA	CGD4|p22-PHOX	cytochrome b-245 alpha chain	protein-coding
186081	chr5	134101771	134102400	+	0	NA	Intergenic	Intergenic	-12596	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
165175	chr3	72419421	72419680	+	0	NA	intron (NM_012234, intron 1 of 3)	intron (NM_012234, intron 1 of 3)	27073	NM_012234	23429		NM_012234	ENSG00000163602	RYBP	AAP1|APAP-1|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
224479	chr9	16192151	16192450	+	0	NA	Intergenic	Intergenic	84013	NM_001364979	100129385		NM_001271829	ENSG00000205549	LINC03041	C9orf92|Em:AL513424.1	long intergenic non-protein coding RNA 3041	ncRNA
84830	chr16	31107071	31107230	+	0	NA	Intergenic	AluSq|SINE|Alu	-1236	NM_005881	10295		NM_005881	ENSG00000103507	BCKDK	BCKDKD|BDK	branched chain keto acid dehydrogenase kinase	protein-coding
202215	chr6	156795751	156796080	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-16184	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
80511	chr16	2748321	2749100	+	0	NA	intron (NR_027275, intron 2 of 5)	FLAM_C|SINE|Alu	3890	NR_027275	100128788		NR_027274	ENSG00000205913	SRRM2-AS1	-	SRRM2 antisense RNA 1	ncRNA
130030	chr2	74391101	74392330	+	0	NA	intron (NR_024463, intron 3 of 3)	CpG	151	NM_001378992	1639		NM_004082	ENSG00000204843	DCTN1	DAP-150|DP-150|HMND14|P135	dynactin subunit 1	protein-coding
40214	chr11	63531221	63532130	+	0	NA	Intergenic	MER66C|LTR|ERV1	-5133	NM_004585	5920		NM_004585	ENSG00000133321	PLAAT4	HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3	phospholipase A and acyltransferase 4	protein-coding
32392	chr10	102424671	102425050	+	0	NA	intron (NM_024040, intron 2 of 8)	intron (NM_024040, intron 2 of 8)	-4926	NM_001270965	5662		NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding
145511	chr20	44010501	44010730	+	0	NA	intron (NM_032883, intron 4 of 9)	intron (NM_032883, intron 4 of 9)	64719	NM_001098798	84969		NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
193982	chr6	31733251	31733550	+	0	NA	intron (NM_001287594, intron 5 of 6).5	intron (NM_001287594, intron 5 of 6).5	-3137	NM_013974	23564		NM_013974	ENSG00000213722	DDAH2	DDAH|DDAHII|G6a|HEL-S-277|NG30	DDAH family member 2, ADMA-independent	protein-coding
92291	chr17	8091021	8091480	+	0	NA	Intergenic	Intergenic	3194	NR_036201	100422983		NR_036201	ENSG00000264005	MIR4314	-	microRNA 4314	ncRNA
22566	chr1	222653351	222653900	+	0	NA	intron (NM_001324062, intron 15 of 28)	intron (NM_001324062, intron 15 of 28)	9322	NM_001300867	375056		NM_198551	ENSG00000154305	MIA3	ARNT|D320|ODCD2|TANGO|TANGO1|UNQ6077	MIA SH3 domain ER export factor 3	protein-coding
218785	chr8	59001421	59002180	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	117347	NM_014729	9760		NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
34818	chr11	289911	290650	+	0	NA	intron (NM_025092, intron 2 of 13)	intron (NM_025092, intron 2 of 13)	1154	NM_025092	80162		NM_025092	ENSG00000142102	PGGHG	ATHL1	protein-glucosylgalactosylhydroxylysine glucosidase	protein-coding
33668	chr10	119868101	119868700	+	0	NA	intron (NM_001256379, intron 1 of 15)	AluSz6|SINE|Alu	4443	NM_001256378	79892		NM_024834	ENSG00000197771	MCMBP	C10orf119|MCM-BP	minichromosome maintenance complex binding protein	protein-coding
58776	chr12	132719371	132719530	+	0	NA	TTS (NM_138575)	TTS (NM_138575)	8608	NM_138575	192111		NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding
193213	chr6	29801921	29802180	+	0	NA	Intergenic	Intergenic	-8977	NR_002139	54435		NM_018985		HCG4	HCG4P10|HCGIV-10|HCGIV.9	HLA complex group 4	ncRNA
75592	chr15	67092771	67093530	+	0	NA	intron (NM_005902, intron 1 of 8)	MIRc|SINE|MIR	27548	NM_005902	4088		NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3|hMAD-3|hSMAD3|mad3	SMAD family member 3	protein-coding
21162	chr1	203754501	203755300	+	0	NA	Intergenic	AluSg|SINE|Alu	-10283	NM_001136190	54900		NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding
166918	chr3	125032471	125032830	+	0	NA	intron (NM_020733, intron 1 of 16)	L3|LINE|CR1	23347	NM_020733	57493		NM_020733	ENSG00000173706	HEG1	HEG|MST112|MSTP112	heart development protein with EGF like domains 1	protein-coding
104887	chr17	81882271	81882430	+	0	NA	Intergenic	AluSg|SINE|Alu	-8440	NM_001289414	51529		NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding
234889	chrX	30655121	30655380	+	0	NA	intron (NM_001205019, intron 1 of 20)	intron (NM_001205019, intron 1 of 20)	1827	NM_000167	2710		NM_000167	ENSG00000198814	GK	GK1|GKD	glycerol kinase	protein-coding
145836	chr20	45833301	45834780	+	0	NA	intron (NM_152897, intron 1 of 4)	CpG	241	NM_001042633	90203		NM_033421	ENSG00000124104	SNX21	C20orf161|PP3993|SNX-L|SNXL|dJ337O18.4	sorting nexin family member 21	protein-coding
146364	chr20	49269471	49269630	+	0	NA	intron (NM_021035, intron 3 of 13)	AluSx|SINE|Alu	8507	NM_021035	57169		NM_021035	ENSG00000124201	ZNFX1	IMD91	zinc finger NFX1-type containing 1	protein-coding
16681	chr1	155192451	155193900	+	0	NA	promoter-TSS (NM_002456)	promoter-TSS (NM_002456)	-260	NM_001204295	4582		NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|ADTKD2|CA 15-3|CD227|Ca15-3|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding
48907	chr12	12564001	12564780	+	0	NA	Intergenic	Intergenic	-1527	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
100389	chr17	60149801	60150500	+	0	NA	intron (NR_137422, intron 1 of 11)	CpG	177	NM_000717	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
230387	chr9	128094221	128095030	+	0	NA	intron (NM_001265614, intron 1 of 10)	intron (NM_001265614, intron 1 of 10)	3161	NM_001265614	114789		NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2|SCAMC2	solute carrier family 25 member 25	protein-coding
117369	chr19	19562721	19563600	+	0	NA	intron (NM_025245, intron 7 of 7)	intron (NM_025245, intron 7 of 7)	24895	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
154396	chr22	35308071	35308230	+	0	NA	intron (NR_156428, intron 1 of 13)	MLT2D|LTR|ERVL	8256	NR_156428	10043		NM_005488	ENSG00000100284	TOM1	IMD85	target of myb1 membrane trafficking protein	protein-coding
114316	chr19	11986951	11988000	+	0	NA	promoter-TSS (NR_134930)	promoter-TSS (NR_134930)	-142	NR_134927	101928464		NR_134927	ENSG00000219665	ZNF433-AS1	-	ZNF433 and ZNF878 antisense RNA 1	ncRNA
8365	chr1	40315071	40315960	+	0	NA	intron (NM_001852, intron 2 of 31)	CpG	1771	NM_001852	1298		NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding
186200	chr5	134268271	134268430	+	0	NA	Intergenic	AluJo|SINE|Alu	-42277	NM_002715	5515		NM_002715	ENSG00000113575	PPP2CA	HJS3|NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C	protein phosphatase 2 catalytic subunit alpha	protein-coding
68117	chr14	75488571	75489430	+	0	NA	Intergenic	Intergenic	-33469	NM_006399	10538		NM_006399	ENSG00000156127	BATF	B-ATF|BATF1|SFA-2|SFA2	basic leucine zipper ATF-like transcription factor	protein-coding
205091	chr7	6704721	6705200	+	0	NA	intron (NM_016265, intron 2 of 4)	intron (NM_016265, intron 2 of 4)	1987	NM_006956	7559		NM_006956	ENSG00000164631	ZNF12	GIOT-3|HZF11|KOX3|ZNF325	zinc finger protein 12	protein-coding
180872	chr5	33435671	33436280	+	0	NA	Intergenic	Intergenic	-4721	NM_001258437	6897		NM_152295	ENSG00000113407	TARS1	TARS|TTD7|ThrRS	threonyl-tRNA synthetase 1	protein-coding
128936	chr2	64533951	64534050	+	0	NA	intron (NM_203437, intron 1 of 9)	intron (NM_203437, intron 1 of 9)	8487	NR_039633	100616419		NR_039633	ENSG00000283204	MIR4434	-	microRNA 4434	ncRNA
115590	chr19	16025621	16025930	+	0	NA	non-coding (NR_026828, exon 9 of 9)	non-coding (NR_026828, exon 9 of 9)	-7938	NR_024335	148231		NR_024335	ENSG00000167459	LINC00905	-	long intergenic non-protein coding RNA 905	ncRNA
155510	chr22	38685851	38686230	+	0	NA	TTS (NM_020243)	TTS (NM_020243)	4083	NM_020243	56993		NM_020243	ENSG00000100216	TOMM22	1C9-2|MST065|MSTP065|TOM22	translocase of outer mitochondrial membrane 22	protein-coding
34111	chr10	126041551	126042830	+	0	NA	exon (NM_001288975, exon 19 of 19)	exon (NM_001288975, exon 19 of 19)	-68917	NR_102707	101410540		NR_102707	ENSG00000233409	FANK1-AS1	-	FANK1 antisense RNA 1	ncRNA
211715	chr7	106871901	106873030	+	0	NA	intron (NM_001282426, intron 2 of 10)	intron (NM_001282426, intron 2 of 10)	6986	NM_002649	5294		NM_002649	ENSG00000105851	PIK3CG	IMD97|PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding
49041	chr12	14384551	14385580	+	0	NA	promoter-TSS (NM_181352)	promoter-TSS (NM_181352)	-216	NM_181352	55729		NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|ATF7IP1|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
236168	chrX	65127871	65128030	+	0	NA	Intergenic	L1PB1|LINE|L1	-93209	NM_001178032	55906		NM_018684	ENSG00000126970	ZC4H2	HCA127|KIAA1166|MCS|MRXS4|WRWF|WRWFFR|WWS	zinc finger C4H2-type containing	protein-coding
129226	chr2	68246671	68247430	+	0	NA	intron (NM_000945, intron 1 of 5)	AluJb|SINE|Alu	5482	NM_000945	5534		NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding
229618	chr9	124011201	124011980	+	0	NA	promoter-TSS (NM_004789)	promoter-TSS (NM_004789)	-178	NM_004789	9355		NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding
92766	chr17	15561701	15562280	+	0	NA	intron (NR_037924, intron 1 of 5)	MER41A|LTR|ERV1	1493	NM_001204478	100533496		NM_001204478	ENSG00000259024	TVP23C-CDRT4	FAM18B2|FAM18B2-CDRT4|TVP23C	TVP23C-CDRT4 readthrough	protein-coding
42625	chr11	72228401	72228600	+	0	NA	intron (NM_001567, intron 3 of 27)	intron (NM_001567, intron 3 of 27)	3733	NM_001567	3636		NM_001567	ENSG00000165458	INPPL1	OPSMD|SHIP2	inositol polyphosphate phosphatase like 1	protein-coding
203780	chr7	1236121	1236830	+	0	NA	exon (NM_001080461, exon 3 of 3)	exon (NM_001080461, exon 3 of 3)	3603	NM_001080461	340260		NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding
78485	chr15	92913201	92913850	+	0	NA	intron (NM_001042572, intron 2 of 12)	MER20|DNA|hAT-Charlie	9126	NR_036136	100422995		NR_036136	ENSG00000284324	MIR3175	mir-3175	microRNA 3175	ncRNA
100555	chr17	62627021	62627780	+	0	NA	promoter-TSS (NM_006039)	promoter-TSS (NM_006039)	-270	NM_006039	9902		NM_006039	ENSG00000011028	MRC2	CD280|CLEC13E|ENDO180|UPARAP	mannose receptor C-type 2	protein-coding
154841	chr22	37079371	37081250	+	0	NA	intron (NM_153609, intron 10 of 17)	intron (NM_153609, intron 10 of 17)	23346	NM_153609	164656		NM_153019	ENSG00000187045	TMPRSS6	IRIDA|MT2	transmembrane serine protease 6	protein-coding
187845	chr5	147234421	147234880	+	0	NA	promoter-TSS (NM_001287740)	promoter-TSS (NM_001287740)	209	NR_147190	105378217		NR_147190		STK32A-AS1	-	STK32A antisense RNA 1	ncRNA
95832	chr17	38805621	38806550	+	0	NA	intron (NM_017748, intron 8 of 9)	AluSx|SINE|Alu	-6180	NM_003559	8396		NM_003559	ENSG00000276293	PIP4K2B	PI5P4KB|PIP5K2B|PIP5KIIB|PIP5KIIbeta|PIP5P4KB	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein-coding
46944	chr11	134405201	134405400	+	0	NA	intron (NM_054025, intron 1 of 5)	intron (NM_054025, intron 1 of 5)	6618	NM_018644	27087		NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
57928	chr12	123583701	123585500	+	0	NA	promoter-TSS (NM_001321445)	promoter-TSS (NM_001321445)	48	NM_001321445	10959		NM_006815	ENSG00000086598	TMED2	P24A|RNP24|p24|p24b1|p24beta1	transmembrane p24 trafficking protein 2	protein-coding
187370	chr5	141848821	141851080	+	0	NA	Intergenic	CpG	16252	NM_001278615	5097		NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding
198800	chr6	109006621	109007680	+	0	NA	intron (NM_014454, intron 1 of 9)	intron (NM_014454, intron 1 of 9)	1838	NM_001199934	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
37500	chr11	18408171	18408330	+	0	NA	TTS (NM_001165415)	TTS (NM_001165415)	-4056	NM_002301	3948		NM_002301	ENSG00000166796	LDHC	CT32|LDH3|LDHX	lactate dehydrogenase C	protein-coding
170019	chr3	180931921	180932180	+	0	NA	intron (NM_001013439, intron 2 of 17)	HAL1|LINE|L1	19379	NM_001363882	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
323	chr1	982171	982330	+	0	NA	promoter-TSS (NM_001291367)	promoter-TSS (NM_001291367)	-157	NM_001291366	84808		NM_032722	ENSG00000187642	PERM1	C1orf170	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding
209574	chr7	77415321	77416930	+	0	NA	intron (NR_110073, intron 1 of 4)	CpG	224	NM_001350899	54103		NM_017439	ENSG00000186088	GSAP	PION	gamma-secretase activating protein	protein-coding
31445	chr10	95840701	95840900	+	0	NA	intron (NM_001164182, intron 3 of 8)	intron (NM_001164182, intron 3 of 8)	-67175	NM_001349008	387707		NM_001001732	ENSG00000188649	CC2D2B	C10orf130|C10orf131	coiled-coil and C2 domain containing 2B	protein-coding
229485	chr9	122159181	122160330	+	0	NA	promoter-TSS (NM_014222)	promoter-TSS (NM_014222)	24	NM_014222	4702		NM_014222	ENSG00000119421	NDUFA8	CI-19KD|CI-PGIV|MC1DN37|PGIV	NADH:ubiquinone oxidoreductase subunit A8	protein-coding
65307	chr14	50087071	50088230	+	0	NA	intron (NR_131171, intron 2 of 8)	intron (NR_131171, intron 2 of 8)	17393	NR_131171	196913		NM_001014830	ENSG00000214900	LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA
138548	chr2	207540121	207540750	+	0	NA	intron (NR_163946, intron 1 of 8)	AluSz6|SINE|Alu	10473	NM_134442	1385		NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding
181874	chr5	54419601	54420100	+	0	NA	Intergenic	Intergenic	-35849	NM_006308	8988		NM_006308	ENSG00000169271	HSPB3	DHMN2C|HMN2C|HMND4|HSPL27	heat shock protein family B (small) member 3	protein-coding
144840	chr20	36866101	36866300	+	0	NA	Intergenic	Intergenic	-2662	NM_080627	140710		NM_080627	ENSG00000149639	MTCL2	C20orf117|KIAA0889|SOGA|SOGA1	microtubule crosslinking factor 2	protein-coding
123348	chr19	53871151	53872050	+	0	NA	intron (NM_001290189, intron 2 of 2)	intron (NM_001290189, intron 2 of 2)	2209	NM_001020818	91663		NM_138373	ENSG00000179820	MYADM	SB135	myeloid associated differentiation marker	protein-coding
85885	chr16	57054621	57055300	+	0	NA	intron (NM_001384955, intron 25 of 47)	intron (NM_001384955, intron 25 of 47)	-37623	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
29467	chr10	70553971	70554200	+	0	NA	intron (NM_014431, intron 18 of 19)	intron (NM_014431, intron 18 of 19)	48656	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
157727	chr22	46574551	46574850	+	0	NA	Intergenic	Intergenic	-2388	NM_001366660	23151		NM_015124	ENSG00000075240	GRAMD4	DIP	GRAM domain containing 4	protein-coding
755	chr1	1499701	1500230	+	0	NA	Intergenic	AluSz6|SINE|Alu	-12197	NM_018188	55210		NM_018188	ENSG00000197785	ATAD3A	HAYOS|PHRINL	ATPase family AAA domain containing 3A	protein-coding
144375	chr20	35097421	35098080	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-4935	NM_199368	26133		NM_015638	ENSG00000100991	TRPC4AP	C20orf188|PPP1R158|TRRP4AP|TRUSS	transient receptor potential cation channel subfamily C member 4 associated protein	protein-coding
2405	chr1	9559571	9560350	+	0	NA	intron (NM_032315, intron 2 of 6)	intron (NM_032315, intron 2 of 6)	20495	NM_032315	84275		NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding
58572	chr12	132433501	132433950	+	0	NA	Intergenic	Intergenic	-56426	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
75796	chr15	68828871	68829300	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-8190	NM_006305	8125		NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding
72658	chr15	38524301	38524500	+	0	NA	intron (NM_001128602, intron 3 of 15)	L2|LINE|L2	40414	NM_001128602	10125		NM_005739	ENSG00000172575	RASGRP1	CALDAG-GEFI|CALDAG-GEFII|IMD64|RASGRP	RAS guanyl releasing protein 1	protein-coding
22762	chr1	224391221	224391680	+	0	NA	intron (NM_001115113, intron 13 of 13)	intron (NM_001115113, intron 13 of 13)	6861	NR_039896	100616468		NR_039896	ENSG00000266618	MIR4742	mir-4742	microRNA 4742	ncRNA
149555	chr21	33202551	33203330	+	0	NA	Intergenic	Intergenic	-26955	NM_207585	3455		NM_000874	ENSG00000159110	IFNAR2	IFN-R|IFN-R-2|IFN-alpha-REC|IFNABR|IFNARB|IMD45	interferon alpha and beta receptor subunit 2	protein-coding
239340	chrY	19262321	19262580	+	0	NA	Intergenic	MER50-int|LTR|ERV1	-184903	NR_001543	83869		NM_031932	ENSG00000176728	TTTY14	CYorf14|NCRNA00137|NCRNA00185|PRO2834|TTY14	testis expressed transcript, Y-linked 14	ncRNA
191798	chr6	14270971	14271380	+	0	NA	Intergenic	Intergenic	14279	NR_108097	102216342		NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA
163966	chr3	53026421	53026750	+	0	NA	intron (NM_016329, intron 1 of 20)	intron (NM_016329, intron 1 of 20)	19488	NM_016329	51460		NM_016329	ENSG00000163935	SFMBT1	RU1|SFMBT|hSFMBT	Scm like with four mbt domains 1	protein-coding
204354	chr7	2902171	2902330	+	0	NA	Intergenic	AluJr|SINE|Alu	-57942	NM_001293092	2768		NM_007353	ENSG00000146535	GNA12	HG1M1|NNX3|RMP|gep	G protein subunit alpha 12	protein-coding
25836	chr10	11218021	11218980	+	0	NA	intron (NM_001326330, intron 3 of 12)	intron (NM_001326330, intron 3 of 12)	53470	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
11613	chr1	91707371	91707930	+	0	NA	intron (NR_036634, intron 15 of 17)	intron (NR_036634, intron 15 of 17)	178501	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
97305	chr17	43230621	43230900	+	0	NA	Intergenic	AluY|SINE|Alu	-1749	NR_047479	100874261		NM_001363254	ENSG00000236383	CCDC200	LINC00854|TMEM106A-AS1	coiled-coil domain containing 200	protein-coding
130854	chr2	87348051	87348150	+	0	NA	Intergenic	L1MDa|LINE|L1	-107327	NR_024204	112597		NR_024204	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA
1818	chr1	6239901	6241080	+	0	NA	Intergenic	Intergenic	-3689	NM_001024598	390992		NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding
227715	chr9	93039751	93040200	+	0	NA	Intergenic	Intergenic	-18713	NM_001287006	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
190105	chr5	177891701	177892300	+	0	NA	Intergenic	Intergenic	16739	NR_003615	728554		NR_003615	ENSG00000291113	LOC728554	-	THO complex 3 pseudogene	pseudo
36926	chr11	10811001	10811200	+	0	NA	intron (NR_120540, intron 2 of 2)	AluSz|SINE|Alu	1803	NR_120540	101928053		NR_120540	ENSG00000246308	LOC101928053	-	uncharacterized LOC101928053	ncRNA
24223	chr1	236141651	236143180	+	0	NA	promoter-TSS (NM_003272)	promoter-TSS (NM_003272)	-124	NM_003272	7107		NM_003272	ENSG00000077585	GPR137B	TM7SF1	G protein-coupled receptor 137B	protein-coding
206670	chr7	36365371	36365800	+	0	NA	intron (NM_001100425, intron 2 of 6)	AluSx|SINE|Alu	1655	NM_001199708	23366		NM_015314	ENSG00000164542	MATCAP2	KIAA0895|TMCP2	microtubule associated tyrosine carboxypeptidase 2	protein-coding
233116	chr9	137135371	137135530	+	0	NA	Intergenic	AluSg4|SINE|Alu	-3704	NM_007327	2902		NM_000832	ENSG00000176884	GRIN1	DEE101|GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1	glutamate ionotropic receptor NMDA type subunit 1	protein-coding
161807	chr3	45462621	45463080	+	0	NA	intron (NM_001368263, intron 7 of 20)	intron (NM_001368263, intron 7 of 20)	46695	NR_048543	100885795		NR_048543		LARS2-AS1	-	LARS2 antisense RNA 1	ncRNA
121369	chr19	46854321	46854630	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-3629	NM_001301078	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
106176	chr18	10490601	10491050	+	0	NA	TTS (NM_153000)	TTS (NM_153000)	-35202	NM_003826	8774		NM_003826	ENSG00000134265	NAPG	GAMMASNAP	NSF attachment protein gamma	protein-coding
77913	chr15	89241901	89242300	+	0	NA	Intergenic	Intergenic	-1879	NM_001113378	55215		NM_018193	ENSG00000140525	FANCI	KIAA1794	FA complementation group I	protein-coding
133610	chr2	126467471	126467630	+	0	NA	Intergenic	Intergenic	-188385	NM_016815	2995		NM_002101	ENSG00000136732	GYPC	CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2'	glycophorin C (Gerbich blood group)	protein-coding
115329	chr19	15113671	15113830	+	0	NA	exon (NM_001300910, exon 8 of 8)	exon (NM_001300910, exon 8 of 8)	6349	NM_001300910	85360		NM_033025	ENSG00000105137	SYDE1	7h3|SYD1	synapse defective Rho GTPase homolog 1	protein-coding
2095	chr1	7964651	7965480	+	0	NA	intron (NM_007262, intron 2 of 6)	intron (NM_007262, intron 2 of 6)	3354	NM_007262	11315		NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|GATD2|HEL-S-67p	Parkinsonism associated deglycase	protein-coding
184143	chr5	95283951	95284830	+	0	NA	exon (NM_024717, exon 1 of 23)	exon (NM_024717, exon 1 of 23)	185	NM_024717	79772		NM_024717	ENSG00000175471	MCTP1	-	multiple C2 and transmembrane domain containing 1	protein-coding
14466	chr1	144473401	144474200	+	0	NA	Intergenic	Intergenic	-12131	NM_001385409	284565		NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	NBPF member 15	protein-coding
30052	chr10	73818321	73818930	+	0	NA	non-coding (NR_160040, exon 18 of 22)	non-coding (NR_160040, exon 18 of 22)	-6805	NR_160744	8509		NM_003635	ENSG00000166507	NDST2	HSST2|N-HSST 2|NST2	N-deacetylase and N-sulfotransferase 2	protein-coding
184392	chr5	98880171	98880630	+	0	NA	intron (NR_157078, intron 23 of 36)	L2a|LINE|L2	-48162	NR_151718	102724810		NR_151718	ENSG00000248489	CHD1-DT	LINC02062	CHD1 divergent transcript	ncRNA
126538	chr2	28565771	28565930	+	0	NA	promoter-TSS (NR_138141)	promoter-TSS (NR_138141)	-507	NR_138141	151056		NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding
161586	chr3	43014901	43015300	+	0	NA	intron (NM_001129908, intron 1 of 4)	intron (NM_001129908, intron 1 of 4)	35789	NM_001129908	729085		NM_001129908	ENSG00000144649	GASK1A	C3orf41|FAM198A	golgi associated kinase 1A	protein-coding
55044	chr12	96397651	96397950	+	0	NA	intron (NM_002595, intron 1 of 16)	intron (NM_002595, intron 1 of 16)	2639	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
131919	chr2	98837061	98837430	+	0	NA	intron (NM_207362, intron 3 of 9)	intron (NM_207362, intron 3 of 9)	-65347	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
201917	chr6	151387301	151387850	+	0	NA	intron (NM_020861, intron 1 of 2)	intron (NM_020861, intron 1 of 2)	3984	NM_020861	57621		NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding
224836	chr9	27365921	27366180	+	0	NA	intron (NM_024761, intron 2 of 3)	G-rich|Low_complexity|Low_complexity	-68900	NM_020641	54586		NM_020641	ENSG00000120160	EQTN	AFAF|C9orf11|SPACA8	equatorin	protein-coding
96253	chr17	39844421	39844830	+	0	NA	intron (NM_183231, intron 1 of 5)	L2a|LINE|L2	19563	NM_001284514	22806		NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|IMD84|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
83965	chr16	29181701	29182150	+	0	NA	Intergenic	Intergenic	107083	NR_003369	653390		NR_003369	ENSG00000103472	RRN3P2	-	RRN3 pseudogene 2	pseudo
64292	chr14	23548171	23548800	+	0	NA	intron (NM_033400, intron 1 of 9)	intron (NM_033400, intron 1 of 9)	3280	NM_033400	85446		NM_033400	ENSG00000136367	ZFHX2	MARSIS|ZFH-5|ZFH5|ZNF409	zinc finger homeobox 2	protein-coding
42272	chr11	68244421	68244880	+	0	NA	Intergenic	AluJr|SINE|Alu	27323	NM_001300913	53838		NM_022338	ENSG00000171067	C11orf24	DM4E3	chromosome 11 open reading frame 24	protein-coding
150876	chr21	44126001	44126400	+	0	NA	intron (NM_005049, intron 16 of 20).2	intron (NM_005049, intron 16 of 20).2	-7483	NR_135220	8209		NM_004649	ENSG00000160221	GATD3	C21orf33|ES1|GATD3A|GT335|HES1|KNPH|KNPI	glutamine amidotransferase class 1 domain containing 3	protein-coding
16389	chr1	154407171	154408580	+	0	NA	intron (NM_001206866, intron 1 of 6)	intron (NM_001206866, intron 1 of 6)	-1311	NR_147855	101928101		NR_147855	ENSG00000228013	IL6R-AS1	-	IL6R antisense RNA 1	ncRNA
224511	chr9	19099171	19099730	+	0	NA	intron (NM_017645, intron 1 of 16)	AluY|SINE|Alu	3454	NM_017645	54801		NM_017645	ENSG00000147874	HAUS6	Dgt6|FAM29A	HAUS augmin like complex subunit 6	protein-coding
191766	chr6	14109851	14110380	+	0	NA	Intergenic	Intergenic	-7141	NM_001251901	9308		NM_004233	ENSG00000112149	CD83	BL11|HB15	CD83 molecule	protein-coding
196293	chr6	43009001	43009700	+	0	NA	exon (NM_001270476, exon 12 of 16)	exon (NM_001270476, exon 12 of 16)	4596	NM_014623	4201		NM_014623	ENSG00000124733	MEA1	HYS|MEA	male-enhanced antigen 1	protein-coding
98397	chr17	46566301	46566900	+	0	NA	intron (NM_001039083, intron 3 of 3).2	intron (NM_001039083, intron 3 of 3).2	13091	NM_001113738	51326		NM_016632	ENSG00000185829	ARL17A	ARF1P2|ARL17P1	ADP ribosylation factor like GTPase 17A	protein-coding
97456	chr17	43694071	43694730	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-32478	NM_004527	4222		NM_004527	ENSG00000005102	MEOX1	KFS2|MOX1	mesenchyme homeobox 1	protein-coding
6085	chr1	27238501	27238700	+	0	NA	intron (NM_015023, intron 1 of 15)	AluSx|SINE|Alu	3968	NM_015023	23038		NM_015023	ENSG00000142784	WDTC1	ADP|DCAF9	WD and tetratricopeptide repeats 1	protein-coding
160683	chr3	32257801	32258000	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	19220	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
163998	chr3	53161821	53162700	+	0	NA	intron (NM_001316327, intron 1 of 18)	intron (NM_001316327, intron 1 of 18)	753	NM_001316327	5580		NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding
99088	chr17	48999651	49000180	+	0	NA	intron (NM_001160423, intron 2 of 12)	intron (NM_001160423, intron 2 of 12)	2530	NM_001160423	10642		NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding
115023	chr19	14086401	14086800	+	0	NA	promoter-TSS (NM_001277378)	promoter-TSS (NM_001277378)	-817	NM_001277378	646457		NM_001277378	ENSG00000188032	C19orf67	-	chromosome 19 open reading frame 67	protein-coding
114425	chr19	12675051	12675500	+	0	NA	TTS (NM_001369692)	TTS (NM_001369692)	5522	NM_032332	84292		NM_032332	ENSG00000123154	WDR83	MORG1	WD repeat domain 83	protein-coding
138989	chr2	218295351	218295650	+	0	NA	intron (NM_015488, intron 2 of 9)	L2c|LINE|L2	-2923	NM_001321438	64114		NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
208987	chr7	74215521	74216450	+	0	NA	exon (NM_014146, exon 2 of 13)	exon (NM_014146, exon 2 of 13)	5979	NM_014146	7462		NM_014146	ENSG00000086730	LAT2	HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5	linker for activation of T cells family member 2	protein-coding
26605	chr10	22260251	22260350	+	0	NA	Intergenic	L2a|LINE|L2	8228	NR_038921	100130992		NR_038921		LOC100130992	-	uncharacterized LOC100130992	ncRNA
233634	chrX	581821	582080	+	0	NA	Intergenic	Intergenic	-42394	NM_006883	6473		NM_000451	ENSG00000185960	SHOX	GCFX|PHOG|SHOX1|SHOXY|SS	SHOX homeobox	protein-coding
30544	chr10	79562171	79562550	+	0	NA	Intergenic	Intergenic	-1953	NM_001098668	729238		NM_001098668	ENSG00000185303	SFTPA2	COLEC5|ILD2|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII	surfactant protein A2	protein-coding
168516	chr3	143855121	143855650	+	0	NA	Intergenic	Intergenic	-6917	NM_173653	285195		NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding
175291	chr4	67581151	67582050	+	0	NA	intron (NM_012108, intron 5 of 8)	intron (NM_012108, intron 5 of 8)	22873	NM_001317769	26228		NM_012108	ENSG00000035720	STAP1	BRDG1|STAP-1	signal transducing adaptor family member 1	protein-coding
121063	chr19	45866571	45867150	+	0	NA	intron (NM_004497, intron 1 of 1)	intron (NM_004497, intron 1 of 1)	2534	NM_004497	3171		NM_004497	ENSG00000170608	FOXA3	FKHH3|HNF3G|TCF3G	forkhead box A3	protein-coding
104702	chr17	81538921	81539730	+	0	NA	TTS (NM_025161)	TTS (NM_025161)	10948	NM_012418	25794		NM_012418	ENSG00000186765	FSCN2	RFSN|RP30	fascin actin-bundling protein 2, retinal	protein-coding
55552	chr12	105876271	105876430	+	0	NA	Intergenic	Intergenic	169576	NR_110110	101929110		NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility 18	ncRNA
192109	chr6	16716621	16716880	+	0	NA	intron (NM_000332, intron 3 of 8)	MER58A|DNA|hAT-Charlie	43434	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
83990	chr16	29428601	29428800	+	0	NA	intron (NR_135312, intron 15 of 18)	intron (NR_135312, intron 15 of 18)	18326	NR_135312	100422558		NR_135312	ENSG00000254634	SMG1P6	-	SMG1 pseudogene 6	pseudo
179188	chr4	173301521	173301800	+	0	NA	intron (NM_017423, intron 6 of 11)	intron (NM_017423, intron 6 of 11)	32109	NM_001130689	3148		NM_002129	ENSG00000164104	HMGB2	HMG2	high mobility group box 2	protein-coding
135071	chr2	156479371	156479530	+	0	NA	intron (NM_000408, intron 2 of 16)	Tigger16a|DNA|TcMar-Tigger	43071	NM_000408	2820		NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGDH|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
57364	chr12	121785101	121785550	+	0	NA	intron (NM_019034, intron 2 of 4)	MER44B|DNA|TcMar-Tigger	8363	NM_019034	54509		NM_019034	ENSG00000139725	RHOF	ARHF|RIF	ras homolog family member F, filopodia associated	protein-coding
168831	chr3	152247771	152248230	+	0	NA	intron (NM_001376839, intron 2 of 10)	intron (NM_001376839, intron 2 of 10)	4368	NM_001376819	4154		NM_021038	ENSG00000152601	MBNL1	EXP|MBNL	muscleblind like splicing regulator 1	protein-coding
65936	chr14	55385901	55386830	+	0	NA	intron (NM_014924, intron 4 of 9)	intron (NM_014924, intron 4 of 9)	25465	NM_014924	22863		NM_014924	ENSG00000126775	ATG14	ATG14L|BARKOR|KIAA0831	autophagy related 14	protein-coding
127181	chr2	38381651	38381950	+	0	NA	Intergenic	MIRb|SINE|MIR	-3216	NM_001330462	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
160784	chr3	32948951	32949250	+	0	NA	Intergenic	Intergenic	-2544	NM_005508	1233		NM_005508	ENSG00000183813	CCR4	CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5	C-C motif chemokine receptor 4	protein-coding
38567	chr11	46040501	46041080	+	0	NA	intron (NR_147890, intron 5 of 18)	intron (NR_147890, intron 5 of 18)	80029	NM_001352029	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
142877	chr20	17843451	17844130	+	0	NA	Intergenic	L2c|LINE|L2	119156	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
69504	chr14	95534101	95536200	+	0	NA	promoter-TSS (NR_003138)	promoter-TSS (NR_003138)	100	NM_016417	51218		NM_016417	ENSG00000182512	GLRX5	C14orf87|FLB4739|GRX5|PR01238|PRO1238|PRSA|SIDBA3|SPAHGC	glutaredoxin 5	protein-coding
34952	chr11	471971	472130	+	0	NA	intron (NM_001329545, intron 2 of 10)	CpG	21771	NM_001329545	81490		NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding
228269	chr9	98059051	98059680	+	0	NA	intron (NM_018946, intron 1 of 5)	intron (NM_018946, intron 1 of 5)	2633	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
232557	chr9	136355971	136356500	+	0	NA	intron (NM_001200003, intron 2 of 3)	intron (NM_001200003, intron 2 of 3)	1453	NM_001200003	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
102559	chr17	75850251	75850430	+	0	NA	intron (NM_012478, intron 2 of 7)	AluY|SINE|Alu	4995	NM_012478	23558		NM_012478	ENSG00000132471	WBP2	DFNB107|GRAMD6|WBP-2	WW domain binding protein 2	protein-coding
64561	chr14	24631751	24632080	+	0	NA	exon (NM_004131, exon 4 of 5)	exon (NM_004131, exon 4 of 5)	2275	NM_004131	3002		NM_004131	ENSG00000100453	GZMB	C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT	granzyme B	protein-coding
68040	chr14	75205751	75205850	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-29188	NM_006827	10972		NM_006827	ENSG00000170348	TMED10	P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1	transmembrane p24 trafficking protein 10	protein-coding
40526	chr11	64291501	64293150	+	0	NA	intron (NM_001317090, intron 1 of 6)	CpG	327	NM_001317090	50801		NM_016611	ENSG00000182450	KCNK4	FHEIG|K2p4.1|TRAAK|TRAAK1	potassium two pore domain channel subfamily K member 4	protein-coding
70827	chr14	103628301	103629940	+	0	NA	promoter-TSS (NM_005552)	promoter-TSS (NM_005552)	-68	NM_005552	3831		NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding
27452	chr10	31929901	31930750	+	0	NA	Intergenic	Intergenic	-1449	NM_001270695	94134		NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
215344	chr7	157372201	157372900	+	0	NA	intron (NM_001363676, intron 5 of 6)	intron (NM_001363676, intron 5 of 6)	35546	NM_058246	10049		NM_005494	ENSG00000105993	DNAJB6	DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1	DnaJ heat shock protein family (Hsp40) member B6	protein-coding
9602	chr1	52355171	52355530	+	0	NA	intron (NM_032449, intron 21 of 23)	intron (NM_032449, intron 21 of 23)	10855	NM_001330585	200014		NM_032449	ENSG00000154222	CC2D1B	Lgd1	coiled-coil and C2 domain containing 1B	protein-coding
231012	chr9	129566521	129566980	+	0	NA	Intergenic	Intergenic	-42134	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
176926	chr4	102820481	102820850	+	0	NA	intron (NM_181893, intron 1 of 6)	intron (NM_181893, intron 1 of 6)	5195	NM_001300795	7323		NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding
187527	chr5	142551601	142551950	+	0	NA	Intergenic	Intergenic	69559	NM_001257212	2246		NM_000800	ENSG00000113578	FGF1	AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1	fibroblast growth factor 1	protein-coding
190564	chr5	180808821	180809080	+	0	NA	non-coding (NR_157153, exon 2 of 3)	non-coding (NR_157153, exon 2 of 3)	867	NM_001114618	4245		NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	protein-coding
145479	chr20	43838471	43839100	+	0	NA	Intergenic	(GGTGG)n|Simple_repeat|Simple_repeat	-55933	NR_134577	105372626		NR_134577	ENSG00000233277	LINC01728	-	long intergenic non-protein coding RNA 1728	ncRNA
27234	chr10	29449021	29449350	+	0	NA	intron (NR_110927, intron 2 of 2)	intron (NR_110927, intron 2 of 2)	38942	NR_110928	102724316		NR_003930	ENSG00000291093	SVIL-AS1	-	SVIL antisense RNA 1	ncRNA
18103	chr1	160698401	160699230	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK-int|LTR|ERVK	13007	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
174884	chr4	48779901	48781300	+	0	NA	promoter-TSS (NM_015030)	promoter-TSS (NM_015030)	-321	NM_015030	285527		NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding
197007	chr6	53315051	53315530	+	0	NA	intron (NM_001242830, intron 1 of 6)	MLT1A|LTR|ERVL-MaLR	22327	NR_046241	647190		NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo
172015	chr4	970021	971170	+	0	NA	intron (NM_001347, intron 2 of 22)	L1MD1|LINE|L1	2974	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
234253	chrX	13096401	13096800	+	0	NA	Intergenic	Intergenic	-51980	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
84144	chr16	29736821	29737280	+	0	NA	Intergenic	Intergenic	8940	NM_175900	283897		NM_175900	ENSG00000185905	C16orf54	SAIL	chromosome 16 open reading frame 54	protein-coding
15126	chr1	148679401	148680250	+	0	NA	promoter-TSS (NM_001364007)	promoter-TSS (NM_001364007)	-61	NM_001364008	100996763		NM_001364007	ENSG00000286019	NOTCH2NLB	N2N|NOTCH2NL|NOTCH2NLA	notch 2 N-terminal like B	protein-coding
238082	chrX	136204501	136204900	+	0	NA	promoter-TSS (NM_001369331)	promoter-TSS (NM_001369331)	-202	NM_001369331	2273		NM_001449	ENSG00000022267	FHL1	FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA	four and a half LIM domains 1	protein-coding
233733	chrX	1368351	1368600	+	0	NA	intron (NM_001267713, intron 7 of 9).2	AluSp|SINE|Alu	23638	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
167211	chr3	128429471	128429930	+	0	NA	Intergenic	Intergenic	-33894	NR_037890	285224		NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA
170313	chr3	184345501	184346180	+	0	NA	TTS (NM_001171089)	TTS (NM_001171089)	7007	NM_001366133	131408		NM_144635	ENSG00000175182	FAM131A	C3orf40|FLAT715|PRO1378	family with sequence similarity 131 member A	protein-coding
224497	chr9	18178471	18178630	+	0	NA	Intergenic	L1PA3|LINE|L1	-295603	NM_001040272	92949		NM_052866	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS like 1	protein-coding
43297	chr11	76201901	76202300	+	0	NA	intron (NM_004626, intron 1 of 4)	intron (NM_004626, intron 1 of 4)	4402	NM_004626	7481		NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding
106149	chr18	9673201	9673600	+	0	NA	Intergenic	Intergenic	-34901	NM_006868	11031		NM_006868	ENSG00000168461	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding
236147	chrX	63602651	63602750	+	0	NA	Intergenic	L1PA2|LINE|L1	-41605	NR_152611	92249		NR_015353	ENSG00000235437	LINC01278	-	long intergenic non-protein coding RNA 1278	ncRNA
191330	chr6	7085901	7086800	+	0	NA	Intergenic	MIR3|SINE|MIR	-21393	NM_001168344	6239		NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding
94702	chr17	30693521	30694230	+	0	NA	Intergenic	Intergenic	-15733	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
182727	chr5	68259801	68260000	+	0	NA	intron (NM_181523, intron 2 of 15)	intron (NM_181523, intron 2 of 15)	-28619	NM_181524	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
21908	chr1	207823621	207824630	+	0	NA	Intergenic	Intergenic	-1422	NR_135298	100128537		NR_135298		MIR29B2CHG	C1orf132	MIR29B2 and MIR29C host gene	ncRNA
129099	chr2	65124021	65124280	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSz|SINE|Alu	5956	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
237757	chrX	129736201	129736850	+	0	NA	Intergenic	Intergenic	-2454	NM_003399	7512		NM_003399	ENSG00000122121	XPNPEP2	AEACEI|APP2	X-prolyl aminopeptidase 2	protein-coding
213418	chr7	137997401	137997600	+	0	NA	intron (NM_001253775, intron 1 of 3)	AluJb|SINE|Alu	4586	NM_194071	64764		NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding
79663	chr16	1206621	1207550	+	0	NA	exon (NM_001005407, exon 13 of 34)	exon (NM_001005407, exon 13 of 34)	18183	NM_012467	25823		NM_012467	ENSG00000116176	TPSG1	PRSS31|TMT|trpA	tryptase gamma 1	protein-coding
107759	chr18	50389121	50389380	+	0	NA	intron (NM_001039535, intron 5 of 6).2	intron (NM_001039535, intron 5 of 6).2	14204	NM_001039535	220134		NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
142371	chr20	3797401	3798500	+	0	NA	intron (NM_004358, intron 2 of 15)	intron (NM_004358, intron 2 of 15)	-2112	NM_001287524	994		NM_004358	ENSG00000101224	CDC25B	-	cell division cycle 25B	protein-coding
203852	chr7	1453371	1453530	+	0	NA	intron (NM_182924, intron 1 of 16)	MLT1B|LTR|ERVL-MaLR	6020	NM_182924	79778		NM_024723	ENSG00000164877	MICALL2	JRAB|MICAL-L2	MICAL like 2	protein-coding
160266	chr3	25661751	25662330	+	0	NA	intron (NM_001330700, intron 1 of 35)	intron (NM_001330700, intron 1 of 35)	2332	NM_001068	7155		NM_001068	ENSG00000077097	TOP2B	BILU|TOPIIB|top2beta	DNA topoisomerase II beta	protein-coding
171637	chr3	197581451	197581850	+	0	NA	Intergenic	Intergenic	-8327	NM_203315	622		NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding
124206	chr19	56567071	56568030	+	0	NA	promoter-TSS (NM_001001668)	promoter-TSS (NM_001001668)	82	NM_001001668	388566		NM_001001668	ENSG00000197016	ZNF470	CZF-1	zinc finger protein 470	protein-coding
152845	chr22	22117351	22117450	+	0	NA	Intergenic	Intergenic	-73466	NR_135291	649179		NR_135291	ENSG00000290847	PRAMENP	PRAMEF24P|PRAMEL	PRAME N-terminal like, pseudogene	pseudo
106092	chr18	9143601	9144430	+	0	NA	intron (NM_001204056, intron 1 of 11)	intron (NM_001204056, intron 1 of 11)	6452	NM_001204056	23253		NM_015208	ENSG00000101745	ANKRD12	ANCO-2|ANCO1|GAC-1|Nbla00144	ankyrin repeat domain 12	protein-coding
225430	chr9	35071551	35072100	+	0	NA	5' UTR (NM_001354928, exon 1 of 17)	5' UTR (NM_001354928, exon 1 of 17)	483	NM_001354928	7415		NM_007126	ENSG00000165280	VCP	CDC48|FTDALS6|TERA|p97	valosin containing protein	protein-coding
197834	chr6	87929801	87930150	+	0	NA	Intergenic	Intergenic	-117866	NM_030960	81833		NM_030960	ENSG00000118434	SPACA1	SAMP32|SPGF85	sperm acrosome associated 1	protein-coding
129142	chr2	65432101	65433330	+	0	NA	promoter-TSS (NM_181784)	promoter-TSS (NM_181784)	-116	NM_181784	200734		NM_181784	ENSG00000198369	SPRED2	NS14|Spred-2	sprouty related EVH1 domain containing 2	protein-coding
185989	chr5	133474771	133474930	+	0	NA	intron (NM_015082, intron 3 of 15)	intron (NM_015082, intron 3 of 15)	-47144	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
152370	chr22	20507351	20508380	+	0	NA	promoter-TSS (NM_001293237)	promoter-TSS (NM_001293237)	-182	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
4406	chr1	21178171	21178400	+	0	NA	Intergenic	MIRc|SINE|MIR	-1388	NM_001198802	8672		NM_003760	ENSG00000075151	EIF4G3	eIF-4G 3|eIF4G 3|eIF4GII	eukaryotic translation initiation factor 4 gamma 3	protein-coding
188071	chr5	150082571	150082730	+	0	NA	intron (NR_164679, intron 1 of 19)	MIRb|SINE|MIR	3904	NM_001288705	1436		NM_005211	ENSG00000182578	CSF1R	BANDDOS|C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|GPSC|HDLS|HDLS1|M-CSF-R	colony stimulating factor 1 receptor	protein-coding
49457	chr12	25053851	25054180	+	0	NA	intron (NM_001204126, intron 1 of 19)	AluJb|SINE|Alu	1309	NM_006152	4033		NM_006152	ENSG00000118308	IRAG2	JAW1|LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein-coding
213685	chr7	140083851	140084510	+	0	NA	TTS (NM_030647)	TTS (NM_030647)	-21229	NR_130117	64761		NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding
42752	chr11	72720121	72720500	+	0	NA	intron (NM_001040118, intron 3 of 34)	intron (NM_001040118, intron 3 of 34)	2030	NR_161388	116985		NM_015242	ENSG00000186635	ARAP1	CENTD2|cnt-d2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
191284	chr6	6583901	6584180	+	0	NA	intron (NR_026970, intron 1 of 7)	LTR91|LTR|ERVL	-4680	NM_004271	9450		NM_004271	ENSG00000112799	LY86	MD-1|MD1|MMD-1|dJ80N2.1	lymphocyte antigen 86	protein-coding
68611	chr14	89618601	89619730	+	0	NA	promoter-TSS (NM_001085471)	promoter-TSS (NM_001085471)	0	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
34617	chr10	133280771	133281280	+	0	NA	intron (NM_001256618, intron 16 of 16)	(GCTGG)n|Simple_repeat|Simple_repeat	-4157	NM_001164490	101		NM_001109	ENSG00000151651	ADAM8	CD156|CD156a|MS2	ADAM metallopeptidase domain 8	protein-coding
44689	chr11	111422921	111423200	+	0	NA	Intergenic	Intergenic	-4874	NR_046085	100132078		NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
216775	chr8	22499001	22499200	+	0	NA	intron (NM_005605, intron 4 of 13)	AluSg|SINE|Alu	-52827	NM_005775	10174		NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
49935	chr12	39713171	39713330	+	0	NA	intron (NR_135051, intron 11 of 18)	(TA)n|Simple_repeat|Simple_repeat	87067	NR_135051	283461		NM_001031748	ENSG00000180116	REDIC1	C12orf40|HEIP1|HEL-206|HEL-S-94	regulator of DNA class I crossover intermediates 1	protein-coding
24706	chr1	247333751	247334250	+	0	NA	non-coding (NR_168398, exon 3 of 3)	non-coding (NR_168398, exon 3 of 3)	1946	NR_168396	107985115		NR_168396	ENSG00000289234	ZNF496-DT	XLOC_000647	ZNF496 divergent transcript	ncRNA
96773	chr17	41738971	41739130	+	0	NA	Intergenic	AluSz|SINE|Alu	-4404	NM_001079871	9001		NM_003949	ENSG00000173805	HAP1	HAP2|HIP5|HLP|hHLP1	huntingtin associated protein 1	protein-coding
33867	chr10	124411171	124411330	+	0	NA	intron (NM_001171814, intron 1 of 8)	L1MC4|LINE|L1	7673	NM_001322967	4942		NM_000274	ENSG00000065154	OAT	GACR|HOGA|OATASE|OKT	ornithine aminotransferase	protein-coding
2769	chr1	10700021	10700280	+	0	NA	intron (NM_017766, intron 3 of 15)	intron (NM_017766, intron 3 of 15)	96496	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
94348	chr17	28895621	28896300	+	0	NA	intron (NM_004475, intron 1 of 10)	intron (NM_004475, intron 1 of 10)	1773	NM_004475	2319		NM_004475	ENSG00000132589	FLOT2	ECS-1|ECS1|ESA|ESA1|M17S1	flotillin 2	protein-coding
155748	chr22	39177371	39177850	+	0	NA	Intergenic	Intergenic	-24930	NM_175709	23492		NM_175709	ENSG00000100307	CBX7	-	chromobox 7	protein-coding
9917	chr1	54458101	54458500	+	0	NA	Intergenic	AluJo|SINE|Alu	-51906	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
229992	chr9	126860021	126861830	+	0	NA	intron (NM_001099270, intron 1 of 1)	CpG	286	NM_001099270	403341		NM_203482	ENSG00000177125	ZBTB34	ZNF918	zinc finger and BTB domain containing 34	protein-coding
98199	chr17	46126351	46126850	+	0	NA	intron (NM_015443, intron 2 of 14).2	intron (NM_015443, intron 2 of 14).2	66182	NM_001193466	284058		NM_015443	ENSG00000120071	KANSL1	C17DELq21.31|CENP-36|DEL17Q21.31|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding
161978	chr3	46325651	46325950	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-27944	NM_001123041	729230		NM_001123041	ENSG00000121807	CCR2	CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R|PCLUD	C-C motif chemokine receptor 2	protein-coding
168337	chr3	141874251	141874880	+	0	NA	Intergenic	Intergenic	-2078	NM_001679	483		NM_001679	ENSG00000069849	ATP1B3	ATPB-3|CD298	ATPase Na+/K+ transporting subunit beta 3	protein-coding
198214	chr6	98824021	98825130	+	0	NA	Intergenic	CpG	7125	NR_148381	105447646		NR_148381		PNKY	-	long intergenic non-protein coding RNA PNKY	ncRNA
16187	chr1	153801721	153802180	+	0	NA	Intergenic	Intergenic	8003	NR_126565	343052		NR_126565	ENSG00000291199	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo
15058	chr1	148439221	148439700	+	0	NA	intron (NR_027468, intron 1 of 4)	THE1B-int|LTR|ERVL-MaLR	20460	NR_104014	388685		NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA
178739	chr4	153111801	153112630	+	0	NA	Intergenic	Intergenic	-39948	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
78296	chr15	90892471	90892630	+	0	NA	intron (NM_001143783, intron 11 of 16)	intron (NM_001143783, intron 11 of 16)	7504	NM_001143784	2242		NM_002005	ENSG00000182511	FES	FPS	FES proto-oncogene, tyrosine kinase	protein-coding
136997	chr2	190563021	190563600	+	0	NA	Intergenic	Intergenic	-28588	NR_136298	100131211		NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
4096	chr1	19209571	19211130	+	0	NA	promoter-TSS (NR_135115)	promoter-TSS (NR_135115)	-36	NR_135114	101927895		NR_135114	ENSG00000230424	EMC1-AS1	-	EMC1 antisense RNA 1	ncRNA
206999	chr7	38346701	38347130	+	0	NA	intron (NR_040085, intron 2 of 3)	L1MC|LINE|L1	5338	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
220519	chr8	100678471	100678830	+	0	NA	Intergenic	MIRb|SINE|MIR	24374	NR_106992	102466854		NR_106992	ENSG00000284570	MIR7705	hsa-mir-7705	microRNA 7705	ncRNA
211154	chr7	102571171	102571330	+	0	NA	intron (NM_001097615, intron 1 of 8)	MER20|DNA|hAT-Charlie	1371	NM_001097615	548644		NM_001015884	ENSG00000285437	POLR2J3	RPB11b2	RNA polymerase II subunit J3	protein-coding
221101	chr8	117845671	117845930	+	0	NA	intron (NM_000127, intron 1 of 10)	MIRb|SINE|MIR	75113	NR_145799	109623457		NR_145799		SNORD168	-	small nucleolar RNA, C/D box 168	snoRNA
169943	chr3	179038501	179038950	+	0	NA	intron (NR_164721, intron 2 of 5)	L1PA6|LINE|L1	30617	NM_001375825	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
56019	chr12	110382851	110383150	+	0	NA	intron (NM_016238, intron 6 of 10)	intron (NM_016238, intron 6 of 10)	18949	NM_001385210	51434		NM_016238	ENSG00000196510	ANAPC7	APC7|FERBON	anaphase promoting complex subunit 7	protein-coding
12402	chr1	101307721	101308180	+	0	NA	Intergenic	Intergenic	-15887	NR_126402	104355286		NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA
128705	chr2	61662451	61662550	+	0	NA	Intergenic	L2b|LINE|L2	-124144	NM_003400	7514		NM_003400	ENSG00000082898	XPO1	CRM-1|CRM1|emb|exp1	exportin 1	protein-coding
54587	chr12	92431171	92431530	+	0	NA	TTS (NR_027933)	TTS (NR_027933)	1649	NR_144319	574016		NM_001025232	ENSG00000205057	CLLU1-AS1	CLLU1OS	CLLU1 antisense RNA 1	ncRNA
93125	chr17	17717901	17718100	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	36542	NM_030665	10743		NM_017574	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding
834	chr1	1580121	1580630	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-5512	NM_014188	29101		NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding
112421	chr19	6239421	6239880	+	0	NA	intron (NM_005934, intron 3 of 11)	(CACACC)n|Simple_repeat|Simple_repeat	40325	NM_005934	4298		NM_005934	ENSG00000130382	MLLT1	ENL|LTG19|YEATS1	MLLT1 super elongation complex subunit	protein-coding
180428	chr5	10434221	10434680	+	0	NA	3' UTR (NM_005885, exon 26 of 26)	3' UTR (NM_005885, exon 26 of 26)	7401	NR_102746	100505845		NR_102746		ROPN1L-AS1	-	ROPN1L antisense RNA 1	ncRNA
219245	chr8	67029371	67029530	+	0	NA	promoter-TSS (NM_001364912)	promoter-TSS (NM_001364912)	-896	NM_001364911	286187		NM_001013626	ENSG00000178125	PPP1R42	LRRC67|TLLR|TLRR|dtr	protein phosphatase 1 regulatory subunit 42	protein-coding
132473	chr2	105888551	105889050	+	0	NA	intron (NM_001004720, intron 3 of 3)	MLT1F1|LTR|ERVL-MaLR	36953	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
9639	chr1	52554601	52555580	+	0	NA	Intergenic	Intergenic	-1998	NM_001009881	23318		NM_015269	ENSG00000134744	TUT4	PAPD3|TENT3A|ZCCHC11	terminal uridylyl transferase 4	protein-coding
145446	chr20	43512321	43512580	+	0	NA	intron (NM_001377311, intron 1 of 20)	FLAM_C|SINE|Alu	-1991	NR_165195	26013		NM_015478	ENSG00000185513	L3MBTL1	H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3	L3MBTL histone methyl-lysine binding protein 1	protein-coding
178865	chr4	154559371	154559730	+	0	NA	Intergenic	Intergenic	-3430	NM_001184741	2244		NM_005141	ENSG00000171564	FGB	HEL-S-78p	fibrinogen beta chain	protein-coding
186257	chr5	134519501	134519900	+	0	NA	Intergenic	AluSx|SINE|Alu	-4615	NM_001308143	23338		NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding
18078	chr1	160663901	160664100	+	0	NA	Intergenic	AluSq2|SINE|Alu	-16689	NM_001330754	6504		NM_003037	ENSG00000117090	SLAMF1	CD150|CDw150|SLAM	signaling lymphocytic activation molecule family member 1	protein-coding
149632	chr21	33476721	33477450	+	0	NA	intron (NM_006134, intron 1 of 6)	AluJb|SINE|Alu	2889	NM_006134	757		NM_006134	ENSG00000142188	TMEM50B	C21orf4|HCVP7TP3	transmembrane protein 50B	protein-coding
161301	chr3	39382751	39383800	+	0	NA	promoter-TSS (NM_017875)	promoter-TSS (NM_017875)	-95	NM_001354798	54977		NM_017875	ENSG00000144659	SLC25A38	SIDBA2	solute carrier family 25 member 38	protein-coding
173382	chr4	7941771	7942650	+	0	NA	Intergenic	L2b|LINE|L2	-2284	NM_001134647	60312		NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding
206124	chr7	27449151	27449250	+	0	NA	Intergenic	L1P2|LINE|L1	-166774	NR_122123	790953		NR_122122		TSL	-	testis-expressed, seven-twelve, leukemia	ncRNA
193778	chr6	31366451	31367530	+	0	NA	Intergenic	Intergenic	-9811	NM_005514	3106		NM_005514	ENSG00000234745	HLA-B	AS|B-4901|HLAB	major histocompatibility complex, class I, B	protein-coding
141623	chr2	241685101	241685630	+	0	NA	intron (NM_001320904, intron 2 of 4)	AluSc|SINE|Alu	1450	NM_001320905	1841		NM_012145	ENSG00000168393	DTYMK	CDC8|CONPM|PP3731|TMPK|TYMK	deoxythymidylate kinase	protein-coding
52897	chr12	57212901	57213790	+	0	NA	TTS (NM_002332)	TTS (NM_002332)	-3449	NM_007224	11247		NM_007224	ENSG00000182379	NXPH4	NPH4	neurexophilin 4	protein-coding
107931	chr18	57667101	57667300	+	0	NA	intron (NM_001374385, intron 19 of 27)	intron (NM_001374385, intron 19 of 27)	36869	NR_164148	100505549		NR_164148	ENSG00000267040	ATP8B1-AS1	-	ATP8B1 antisense RNA 1	ncRNA
222515	chr8	140547401	140548000	+	0	NA	intron (NM_012154, intron 12 of 18)	intron (NM_012154, intron 12 of 18)	35704	NR_040712	54108		NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex subunit 1	protein-coding
140526	chr2	233234001	233234830	+	0	NA	Intergenic	L1ME4c|LINE|L1	-17156	NM_198890	55054		NM_017974	ENSG00000085978	ATG16L1	APG16L|ATG16A|ATG16L|IBD10|WDR30	autophagy related 16 like 1	protein-coding
205873	chr7	25037471	25037630	+	0	NA	Intergenic	LTR45B|LTR|ERV1	-57372	NM_015550	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
228137	chr9	96777271	96778750	+	0	NA	promoter-TSS (NM_001314060)	promoter-TSS (NM_001314060)	77	NM_001314059	22869		NM_014930	ENSG00000081386	ZNF510	-	zinc finger protein 510	protein-coding
185548	chr5	131360671	131361400	+	0	NA	intron (NM_001038702, intron 2 of 4)	intron (NM_001038702, intron 2 of 4)	96982	NM_001375633	56990		NM_020240	ENSG00000158985	CDC42SE2	SPEC2	CDC42 small effector 2	protein-coding
161034	chr3	37996721	37997480	+	0	NA	non-coding (NR_163266, exon 3 of 17)	non-coding (NR_163266, exon 3 of 17)	2962	NM_001370265	50853		NM_015873	ENSG00000136059	VILL	-	villin like	protein-coding
163612	chr3	51997351	51997450	+	0	NA	Intergenic	L2a|LINE|L2	-1505	NM_000992	6159		NM_000992	ENSG00000162244	RPL29	HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370|eL29	ribosomal protein L29	protein-coding
183894	chr5	87366801	87367200	+	0	NA	intron (NM_022650, intron 11 of 24)	AluJb|SINE|Alu	-43372	NR_130929	644285		NR_130929		LOC644285	-	uncharacterized LOC644285	ncRNA
61101	chr13	48443701	48444400	+	0	NA	intron (NM_005767, intron 1 of 6)	MER21A|LTR|ERVL	619	NM_005767	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
154223	chr22	31529301	31529780	+	0	NA	intron (NM_001258325, intron 3 of 30)	L2c|LINE|L2	33004	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
65109	chr14	44366351	44366450	+	0	NA	Intergenic	AluYe5|SINE|Alu	140883	NM_032135	84075		NM_032135	ENSG00000189139	FSCB	C14orf155	fibrous sheath CABYR binding protein	protein-coding
53872	chr12	70251321	70251580	+	0	NA	intron (NR_037615, intron 1 of 16)	intron (NR_037615, intron 1 of 16)	7736	NM_001199303	4848		NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|IDNADFS|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding
3656	chr1	16405421	16406480	+	0	NA	intron (NM_001353349, intron 5 of 10)	MIRb|SINE|MIR	31474	NM_198546	374955		NM_198546	ENSG00000187144	SPATA21	spergen-2|spergen2	spermatogenesis associated 21	protein-coding
178951	chr4	159105701	159106300	+	0	NA	intron (NM_001351724, intron 1 of 30)	intron (NM_001351724, intron 1 of 30)	1949	NM_001351724	9693		NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding
174011	chr4	26379151	26379450	+	0	NA	intron (NM_203284, intron 2 of 11)	AluJr|SINE|Alu	36160	NM_001374403	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
160298	chr3	27451951	27452050	+	0	NA	intron (NR_135544, intron 2 of 24)	intron (NR_135544, intron 2 of 24)	4778	NM_003615	9497		NM_003615	ENSG00000033867	SLC4A7	NBC2|NBC3|NBCN1|SBC2|SLC4A6	solute carrier family 4 member 7	protein-coding
196688	chr6	44829751	44830080	+	0	NA	intron (NM_001350327, intron 9 of 9)	intron (NM_001350327, intron 9 of 9)	-278034	NR_134609	105375075		NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA
129393	chr2	68826471	68826830	+	0	NA	3' UTR (NM_001166276, exon 10 of 10)	3' UTR (NM_001166276, exon 10 of 10)	44747	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
98027	chr17	45406721	45407380	+	0	NA	intron (NR_169601, intron 4 of 20)	intron (NR_169601, intron 4 of 20)	3336	NM_001385392	201176		NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding
142908	chr20	17992471	17993030	+	0	NA	Intergenic	AluSz|SINE|Alu	23732	NM_001310339	92667		NM_052865	ENSG00000125871	MGME1	C20orf72|DDK1|MTDPS11|bA504H3.4	mitochondrial genome maintenance exonuclease 1	protein-coding
100632	chr17	63618751	63619080	+	0	NA	Intergenic	L2a|LINE|L2	-3502	NM_001330431	4215		NM_002401	ENSG00000198909	MAP3K3	MAPKKK3|MEKK3	mitogen-activated protein kinase kinase kinase 3	protein-coding
47462	chr12	3869521	3870530	+	0	NA	intron (NM_001286522, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	3374	NM_001286522	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
14280	chr1	143720771	143720950	+	0	NA	Intergenic	Intergenic	8710	NR_004427	26870		NR_004427	ENSG00000207005	RNU1-2	RNU1C1|RNU1C2|U1C1|U1C21	RNA, U1 small nuclear 2	snRNA
154347	chr22	32476301	32476800	+	0	NA	intron (NM_001033024, intron 1 of 8)	intron (NM_001033024, intron 1 of 8)	1313	NM_001033024	25793		NM_012179	ENSG00000100225	FBXO7	FBX|FBX07|FBX7|PARK15|PKPS	F-box protein 7	protein-coding
150849	chr21	44064121	44064380	+	0	NA	intron (NM_003274, intron 7 of 22)	intron (NM_003274, intron 7 of 22)	-10074	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
61808	chr13	75558651	75558950	+	0	NA	intron (NM_006002, intron 2 of 8)	L2c|LINE|L2	9009	NM_006002	7347		NM_006002	ENSG00000118939	UCHL3	UCH-L3	ubiquitin C-terminal hydrolase L3	protein-coding
152527	chr22	20968451	20969450	+	0	NA	intron (NM_144704, intron 2 of 20)	intron (NM_144704, intron 2 of 20)	1695	NM_001146288	150209		NM_144704	ENSG00000183773	AIFM3	AIFL	apoptosis inducing factor mitochondria associated 3	protein-coding
89576	chr16	89265571	89265930	+	0	NA	Intergenic	Intergenic	-30378	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
45919	chr11	120866971	120867330	+	0	NA	TTS (NR_132790)	TTS (NR_132790)	27647	NR_132790	101929227		NR_132790	ENSG00000250493	LOC101929227	-	uncharacterized LOC101929227	ncRNA
178601	chr4	151991451	151991950	+	0	NA	Intergenic	Intergenic	-109053	NR_121628	100996286		NR_121627	ENSG00000245954	LINC02273	-	long intergenic non-protein coding RNA 2273	ncRNA
170160	chr3	183553451	183553800	+	0	NA	intron (NM_130446, intron 1 of 6)	intron (NM_130446, intron 1 of 6)	2081	NM_130446	89857		NM_130446	ENSG00000172578	KLHL6	-	kelch like family member 6	protein-coding
79009	chr16	22601	23480	+	0	NA	non-coding (NR_130735, exon 1 of 2)	non-coding (NR_130735, exon 1 of 2)	124	NR_130735	100132169		NR_130735	ENSG00000231439	WASIR2	NCRNA00286A	WASH and IL9R antisense RNA 2	ncRNA
35987	chr11	2871771	2872330	+	0	NA	TTS (NR_024627)	TTS (NR_024627)	2017	NR_024627	55539		NM_018722	ENSG00000237941	KCNQ1DN	BWRT|HSA404617	KCNQ1 downstream neighbor	ncRNA
41911	chr11	67280101	67280800	+	0	NA	intron (NM_001619, intron 6 of 20)	L3|LINE|CR1	-8853	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
86558	chr16	67198201	67198880	+	0	NA	promoter-TSS (NM_024712)	promoter-TSS (NM_024712)	-591	NM_024712	79767		NM_024712	ENSG00000102890	ELMO3	CED-12|CED12|ELMO-3	engulfment and cell motility 3	protein-coding
87494	chr16	71804221	71805000	+	0	NA	intron (NM_001128, intron 1 of 22)	AluSz|SINE|Alu	4224	NM_001030007	164		NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1|USRISD	adaptor related protein complex 1 subunit gamma 1	protein-coding
141724	chr2	241857451	241857980	+	0	NA	intron (NM_005018, intron 1 of 4)	intron (NM_005018, intron 1 of 4)	1179	NM_005018	5133		NM_005018	ENSG00000188389	PDCD1	CD279|PD-1|PD1|SLEB2|hPD-1|hPD-l|hSLE1	programmed cell death 1	protein-coding
109526	chr19	852721	853430	+	0	NA	intron (NM_001972, intron 2 of 4)	CpG-12936	772	NM_001972	1991		NM_001972	ENSG00000197561	ELANE	ELA2|GE|HLE|HNE|NE|PMN-E|SCN1	elastase, neutrophil expressed	protein-coding
142658	chr20	5842951	5843600	+	0	NA	intron (NM_001303478, intron 3 of 3)	L1MEd|LINE|L1	-68235	NM_001819	1114		NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding
125414	chr2	11747921	11748900	+	0	NA	promoter-TSS (NM_001349205)	promoter-TSS (NM_001349205)	-123	NM_001349205	23175		NM_145693	ENSG00000134324	LPIN1	PAP1	lipin 1	protein-coding
122883	chr19	50509801	50510000	+	0	NA	intron (NM_138334, intron 2 of 4)	AluY|SINE|Alu	1291	NM_138334	126119		NM_138334	ENSG00000161677	JOSD2	SBBI54	Josephin domain containing 2	protein-coding
19707	chr1	181088301	181089200	+	0	NA	promoter-TSS (NM_016545)	promoter-TSS (NM_016545)	50	NM_016545	51278		NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding
196415	chr6	43390871	43392050	+	0	NA	Intergenic	LTR71B|LTR|ERV1	-21813	NM_014345	24149		NM_014345	ENSG00000171467	ZNF318	HRIHFB2436|TZF|ZFP318	zinc finger protein 318	protein-coding
170013	chr3	180918501	180918880	+	0	NA	intron (NM_001013439, intron 2 of 17)	intron (NM_001013439, intron 2 of 17)	6019	NM_001363882	8087		NM_005087	ENSG00000114416	FXR1	CMYP9A|CMYP9B|FXR1P|MYOPMIL|MYORIBF	FMR1 autosomal homolog 1	protein-coding
57059	chr12	120903801	120905200	+	0	NA	promoter-TSS (NM_139015)	promoter-TSS (NM_139015)	-142	NM_139015	121665		NM_139015	ENSG00000157837	SPPL3	IMP2|MDHV1887|PRO4332|PSH1|PSL4	signal peptide peptidase like 3	protein-coding
238382	chrX	149950771	149951000	+	0	NA	intron (NR_027456, intron 7 of 11)	intron (NR_027456, intron 7 of 11)	12337	NR_027456	100272228		NR_027456	ENSG00000235703	EOLA2-DT	LINC00894	EOLA2 divergent transcript	ncRNA
223582	chr8	144274651	144275680	+	0	NA	intron (NM_015201, intron 3 of 15)	intron (NM_015201, intron 3 of 15)	8712	NM_001080514	642658		NM_001008271	ENSG00000260428	SCX	SCXA|SCXB|bHLHa48	scleraxis bHLH transcription factor	protein-coding
150221	chr21	41068921	41069250	+	0	NA	Intergenic	Intergenic	78979	NR_024100	284835		NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA
94474	chr17	29269521	29270150	+	0	NA	intron (NM_020772, intron 2 of 3)	AluY|SINE|Alu	22976	NM_005208	1411		NM_005208	ENSG00000108255	CRYBA1	CRYB1|CTRCT10	crystallin beta A1	protein-coding
36327	chr11	3873771	3874150	+	0	NA	intron (NM_001382571, intron 1 of 9)	intron (NM_001382571, intron 1 of 9)	17898	NR_039835	100616453		NR_039835	ENSG00000284525	MIR4687	-	microRNA 4687	ncRNA
188877	chr5	159444501	159444730	+	0	NA	Intergenic	Intergenic	21661	NR_027110	285627		NR_027110	ENSG00000253298	LINC01845	-	long intergenic non-protein coding RNA 1845	ncRNA
18133	chr1	160742201	160742800	+	0	NA	intron (NM_001282590, intron 1 of 5)	intron (NM_001282590, intron 1 of 5)	3253	NM_001282596	57823		NM_021181	ENSG00000026751	SLAMF7	19A|CD319|CRACC|CS1	SLAM family member 7	protein-coding
27204	chr10	28577971	28578130	+	0	NA	intron (NM_100486, intron 3 of 12)	AluSz6|SINE|Alu	44932	NM_100486	51322		NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
60411	chr13	40972151	40972780	+	0	NA	intron (NM_001370329, intron 2 of 9)	intron (NM_001370329, intron 2 of 9)	9817	NM_001145353	1997		NM_172373	ENSG00000120690	ELF1	EFTUD1|RIA1	E74 like ETS transcription factor 1	protein-coding
172315	chr4	1616051	1616500	+	0	NA	Intergenic	Intergenic	67716	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
197307	chr6	72616371	72616730	+	0	NA	Intergenic	Intergenic	-5514	NM_001160132	56479		NM_019842	ENSG00000185760	KCNQ5	Kv7.5|MRD46	potassium voltage-gated channel subfamily Q member 5	protein-coding
177950	chr4	139006351	139006850	+	0	NA	intron (NR_133945, intron 1 of 2)	L1MB8|LINE|L1	6046	NR_133945	105377448		NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
231312	chr9	130067471	130068080	+	0	NA	intron (NM_001136557, intron 1 of 19)	AluSz|SINE|Alu	13869	NM_001136557	57720		NM_020960	ENSG00000148358	GPR107	GCDRP|LUSTR1|bA138E2.2	G protein-coupled receptor 107	protein-coding
215044	chr7	152511671	152511830	+	0	NA	Intergenic	AluSx4|SINE|Alu	47626	NR_027387	100128822		NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA
169976	chr3	179328951	179329050	+	0	NA	intron (NM_001375804, intron 5 of 7)	intron (NM_001375804, intron 5 of 7)	5547	NM_001375807	51193		NM_016331	ENSG00000121864	ZNF639	ANC-2H01|ANC_2H01|ZASC1	zinc finger protein 639	protein-coding
140220	chr2	231719751	231720080	+	0	NA	Intergenic	Intergenic	6601	NR_036052	100302285		NR_036052	ENSG00000284378	MIR1244-1	MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1	microRNA 1244-1	ncRNA
86686	chr16	67519771	67520230	+	0	NA	intron (NR_104656, intron 1 of 1)	AluSq2|SINE|Alu	8745	NR_104656	100505942		NR_104656		LOC100505942	-	uncharacterized LOC100505942	ncRNA
233865	chrX	1532751	1533150	+	0	NA	intron (NM_178129, intron 1 of 1)	AluSg|SINE|Alu	4235	NM_178129	286530		NM_178129	ENSG00000182162	P2RY8	P2Y8	P2Y receptor family member 8	protein-coding
69534	chr14	96462101	96462300	+	0	NA	intron (NM_001350892, intron 12 of 15)	intron (NM_001350892, intron 12 of 15)	40126	NR_122121	730202		NR_122121		PAPOLA-DT	-	PAPOLA divergent transcript	ncRNA
99870	chr17	56595701	56596080	+	0	NA	TTS (NM_005450)	TTS (NM_005450)	2191	NM_005450	9241		NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding
177600	chr4	120983001	120983200	+	0	NA	Intergenic	Intergenic	-60374	NM_001300823	11107		NM_018699	ENSG00000138738	PRDM5	BCS2|PFM2	PR/SET domain 5	protein-coding
135371	chr2	160454571	160454730	+	0	NA	intron (NM_016836, intron 1 of 13)	L2c|LINE|L2	39157	NM_016836	5937		NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
115247	chr19	14524271	14524800	+	0	NA	intron (NM_001313964, intron 2 of 3)	AluJo|SINE|Alu	4787	NM_001313964	3337		NM_006145	ENSG00000132002	DNAJB1	HSPF1|Hdj1|Hsp40|RSPH16B|Sis1	DnaJ heat shock protein family (Hsp40) member B1	protein-coding
233601	chrX	330671	332550	+	0	NA	Intergenic	CpG	12465	NR_027232	283981		NR_027231		LINC00685	CXYorf10|NCRNA00107|PPP2R3B-AS1	long intergenic non-protein coding RNA 685	ncRNA
68892	chr14	91336571	91336730	+	0	NA	intron (NM_001080414, intron 10 of 29)	intron (NM_001080414, intron 10 of 29)	81170	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
92641	chr17	10151851	10152430	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	46466	NM_201433	8522		NM_003644	ENSG00000007237	GAS7	-	growth arrest specific 7	protein-coding
65906	chr14	55277901	55278700	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	6146	NM_152231	55030		NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding
68923	chr14	91371321	91371880	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	46220	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
162418	chr3	48300611	48302580	+	0	NA	promoter-TSS (NM_001308433)	promoter-TSS (NM_001308433)	90	NM_001308434	10201		NM_005793	ENSG00000172113	NME6	IPIA-ALPHA|NDK 6|NM23-H6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding
121363	chr19	46849221	46849500	+	0	NA	intron (NM_021575, intron 1 of 3)	intron (NM_021575, intron 1 of 3)	954	NM_001301076	1175		NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 subunit sigma 1	protein-coding
10516	chr1	66929701	66931060	+	0	NA	5' UTR (NM_001077701, exon 1 of 13)	5' UTR (NM_001077701, exon 1 of 13)	124	NM_001077701	57708		NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding
184149	chr5	95591001	95591600	+	0	NA	intron (NM_198150, intron 5 of 7)	intron (NM_198150, intron 5 of 7)	-28787	NM_199243	285601		NM_199243	ENSG00000178015	GPR150	PGR11	G protein-coupled receptor 150	protein-coding
168804	chr3	152202851	152203580	+	0	NA	intron (NR_136178, intron 1 of 2)	intron (NR_136178, intron 1 of 2)	2214	NR_136178	101928166		NR_136178		LOC101928166	-	uncharacterized LOC101928166	ncRNA
115323	chr19	15109501	15109830	+	0	NA	intron (NM_033025, intron 2 of 7)	intron (NM_033025, intron 2 of 7)	2264	NM_001300910	85360		NM_033025	ENSG00000105137	SYDE1	7h3|SYD1	synapse defective Rho GTPase homolog 1	protein-coding
203564	chr7	899421	900250	+	0	NA	intron (NM_006869, intron 8 of 10)	intron (NM_006869, intron 8 of 10)	21054	NM_001284311	11033		NM_006869	ENSG00000105963	ADAP1	CENTA1|GCS1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
26635	chr10	22482671	22482830	+	0	NA	Intergenic	MER96B|DNA|hAT-Tip100	-44821	NR_036533	100499489		NR_036533		LINC03027	-	long intergenic non-protein coding RNA 3027	ncRNA
3809	chr1	16749571	16750800	+	0	NA	Intergenic	Intergenic	9669	NR_004408	26869		NR_004408	ENSG00000207513	RNU1-3	HSD4|RNU1G3	RNA, U1 small nuclear 3	snRNA
48548	chr12	10224021	10224280	+	0	NA	Intergenic	Intergenic	11273	NM_031412	23710		NM_031412	ENSG00000139112	GABARAPL1	APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1	GABA type A receptor associated protein like 1	protein-coding
116558	chr19	18227221	18227480	+	0	NA	promoter-TSS (NM_001369701)	promoter-TSS (NM_001369701)	-912	NM_001369701	5143		NM_000923	ENSG00000105650	PDE4C	DPDE1|PDE21	phosphodiesterase 4C	protein-coding
233951	chrX	2593251	2593750	+	0	NA	Intergenic	Intergenic	-15691	NR_106737	102464837		NR_106737	ENSG00000277120	MIR6089	MIR6089-1|MIR6089-2|hsa-mir-6089-1|hsa-mir-6089-2	microRNA 6089	ncRNA
61720	chr13	74117351	74117850	+	0	NA	intron (NM_007249, intron 1 of 7)	L1MD3|LINE|L1	16329	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
214856	chr7	151348421	151348900	+	0	NA	intron (NM_016118, intron 2 of 14)	AluSz|SINE|Alu	6848	NM_016118	51667		NM_016118	ENSG00000013374	NUB1	BS4|NUB1L|NYREN18	negative regulator of ubiquitin like proteins 1	protein-coding
143452	chr20	30375851	30375950	+	0	NA	Intergenic	MIR|SINE|MIR	-1264	NR_003579	284802		NM_207350		FRG1BP	C20orf80|FRG1B|bA348I14.2	FSHD region gene 1 family member B, pseudogene	pseudo
45116	chr11	117147171	117147730	+	0	NA	intron (NR_110282, intron 1 of 2)	AluJb|SINE|Alu	3163	NM_002572	5049		NM_002572	ENSG00000168092	PAFAH1B2	HEL-S-303	platelet activating factor acetylhydrolase 1b catalytic subunit 2	protein-coding
39079	chr11	47990571	47990730	+	0	NA	intron (NM_002843, intron 1 of 24)	AluSz|SINE|Alu	10091	NM_001098503	5795		NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTP eta|HPTPeta|R-PTP-ETA|R-PTP-J|SCC1|THC10	protein tyrosine phosphatase receptor type J	protein-coding
159424	chr3	13556771	13557130	+	0	NA	intron (NM_001004019, intron 1 of 17)	intron (NM_001004019, intron 1 of 17)	7825	NM_001004019	2199		NM_001998	ENSG00000163520	FBLN2	-	fibulin 2	protein-coding
109220	chr19	481351	482080	+	0	NA	intron (NM_001385599, intron 2 of 4)	intron (NM_001385599, intron 2 of 4)	-6732	NM_182577	284451		NM_182577	ENSG00000181781	CIMAP1D	C19orf19|ODF3L2	CIMAP1 family member D	protein-coding
184092	chr5	93601821	93602530	+	0	NA	Intergenic	Intergenic	18613	NR_031754	100313887		NR_031754	ENSG00000284336	MIR2277	mir-2277	microRNA 2277	ncRNA
108930	chr18	79466321	79466580	+	0	NA	intron (NM_172389, intron 7 of 9)	intron (NM_172389, intron 7 of 9)	66151	NM_172387	4772		NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T cells 1	protein-coding
162685	chr3	48939521	48939980	+	0	NA	intron (NM_001349214, intron 3 of 15)	AluY|SINE|Alu	-20365	NR_161301	646450		NM_001123040		ARIH2OS	C3orf71	ARIH2 opposite strand lncRNA	ncRNA
138983	chr2	218288701	218290050	+	0	NA	intron (NM_001321436, intron 1 of 12)	AluSz|SINE|Alu	627	NM_001321430	64114		NM_022152	ENSG00000135926	TMBIM1	LFG3|MST100|MSTP100|PP1201|RECS1	transmembrane BAX inhibitor motif containing 1	protein-coding
212612	chr7	129216251	129216550	+	0	NA	Intergenic	SVA_A|Retroposon|SVA	-8630	NM_015328	23382		NM_015328	ENSG00000158467	AHCYL2	ADOHCYASE3|IRBIT2	adenosylhomocysteinase like 2	protein-coding
12615	chr1	109093271	109093430	+	0	NA	intron (NM_001322248, intron 2 of 2)	AluJo|SINE|Alu	2586	NR_136242	56900		NM_020141	ENSG00000215717	TMEM167B	AD-020|C1orf119	transmembrane protein 167B	protein-coding
190780	chr6	551451	551630	+	0	NA	intron (NM_018303, intron 21 of 27)	intron (NM_018303, intron 21 of 27)	105424	NM_148959	135458		NM_148959	ENSG00000188996	HUS1B	-	HUS1 checkpoint clamp component B	protein-coding
115029	chr19	14092951	14093200	+	0	NA	3' UTR (NM_001304349, exon 10 of 10)	3' UTR (NM_001304349, exon 10 of 10)	-2324	NM_138352	90378		NM_138352	ENSG00000141858	SAMD1	-	sterile alpha motif domain containing 1	protein-coding
87518	chr16	71882371	71883200	+	0	NA	intron (NM_001318238, intron 2 of 7)	intron (NM_001318238, intron 2 of 7)	756	NM_001376299	55565		NM_017530	ENSG00000102984	ZNF821	-	zinc finger protein 821	protein-coding
6146	chr1	27389601	27389800	+	0	NA	Intergenic	AluJb|SINE|Alu	-2922	NM_005281	2827		NM_005281	ENSG00000181773	GPR3	ACCA	G protein-coupled receptor 3	protein-coding
192103	chr6	16707121	16707580	+	0	NA	intron (NM_000332, intron 3 of 8)	L2|LINE|L2	52834	NR_152114	6310		NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding
135908	chr2	171421101	171421300	+	0	NA	intron (NM_001321157, intron 1 of 10)	L1MEd|LINE|L1	12790	NM_001321155	79828		NM_024770	ENSG00000123600	METTL8	TIP	methyltransferase 8, tRNA N3-cytidine	protein-coding
121069	chr19	45875321	45875580	+	0	NA	Intergenic	Intergenic	10691	NM_015649	26145		NM_015649	ENSG00000170604	IRF2BP1	-	interferon regulatory factor 2 binding protein 1	protein-coding
13580	chr1	116153171	116153530	+	0	NA	Intergenic	Intergenic	41595	NM_152367	126868		NM_152367	ENSG00000173212	MAB21L3	C1orf161|D5	mab-21 like 3	protein-coding
201984	chr6	152297221	152297480	+	0	NA	intron (NM_033071, intron 92 of 145)	L2c|LINE|L2	-83180	NR_120501	100505475		NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA
138212	chr2	202705201	202705800	+	0	NA	intron (NM_173511, intron 2 of 7)	intron (NM_173511, intron 2 of 7)	70531	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
82729	chr16	21167471	21168100	+	0	NA	intron (NM_001301775, intron 3 of 5)	AluSq2|SINE|Alu	-8344	NM_017539	55567		NM_017539	ENSG00000158486	DNAH3	DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3	dynein axonemal heavy chain 3	protein-coding
12774	chr1	109649601	109649850	+	0	NA	Intergenic	MER51A|LTR|ERV1	-6351	NR_024538	2948		NM_000850	ENSG00000168765	GSTM4	GSTM4-4|GTM4	glutathione S-transferase mu 4	protein-coding
97335	chr17	43270771	43271700	+	0	NA	Intergenic	Intergenic	-4412	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
160560	chr3	30686871	30687030	+	0	NA	intron (NM_001024847, intron 6 of 7)	L2b|LINE|L2	80349	NM_003242	7048		NM_003242	ENSG00000163513	TGFBR2	AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII|tbetaR-II	transforming growth factor beta receptor 2	protein-coding
28992	chr10	63270371	63270900	+	0	NA	intron (NM_001322258, intron 2 of 24)	AluJb|SINE|Alu	-1392	NM_001322254	221037		NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
124500	chr19	58579501	58579880	+	0	NA	intron (NR_026052, intron 1 of 1)	LTR50|LTR|ERVL	4291	NR_026052	65996		NM_023939	ENSG00000293115	CENPBD2P	CENPBD1P1	CENPB DNA-binding domains containing 2, pseudogene	pseudo
204054	chr7	1968801	1969200	+	0	NA	intron (NM_001304524, intron 13 of 16)	L1MC4a|LINE|L1	-28429	NM_001304525	8379		NM_003550	ENSG00000002822	MAD1L1	MAD1|MVA7|PIG9|TP53I9|TXBP181	mitotic arrest deficient 1 like 1	protein-coding
208914	chr7	74057521	74058030	+	0	NA	intron (NM_000501, intron 22 of 32)	intron (NM_000501, intron 22 of 32)	-26029	NM_002314	3984		NM_002314	ENSG00000106683	LIMK1	LIMK|LIMK-1	LIM domain kinase 1	protein-coding
25806	chr10	11190201	11190400	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	25270	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
28823	chr10	62361401	62361600	+	0	NA	intron (NR_104162, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	-12657	NM_199450	22891		NM_014951	ENSG00000138311	ZNF365	Su48|UAN|ZNF365D	zinc finger protein 365	protein-coding
135658	chr2	168437001	168437200	+	0	NA	Intergenic	Intergenic	-19172	NM_203463	253782		NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding
20240	chr1	193412801	193413000	+	0	NA	Intergenic	Intergenic	108155	NR_125789	101929184		NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA
131913	chr2	98825801	98826600	+	0	NA	intron (NM_207362, intron 6 of 9)	intron (NM_207362, intron 6 of 9)	-54302	NR_126337	101927070		NR_126337	ENSG00000226791	LINC02611	-	long intergenic non-protein coding RNA 2611	ncRNA
239040	chrY	7141371	7141980	+	0	NA	Intergenic	Intergenic	-132297	NR_028062	5616		NM_002760	ENSG00000293442	PRKY	PRKXP3|PRKYP	protein kinase Y-linked (pseudogene)	pseudo
160689	chr3	32298471	32298630	+	0	NA	intron (NM_001320308, intron 1 of 2)	intron (NM_001320308, intron 1 of 2)	59870	NM_178868	152189		NM_178868	ENSG00000170293	CMTM8	CKLFSF8|CKLFSF8-V2	CKLF like MARVEL transmembrane domain containing 8	protein-coding
52248	chr12	54412921	54414180	+	0	NA	intron (NM_002205, intron 1 of 29)	intron (NM_002205, intron 1 of 29)	5716	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
196299	chr6	43016351	43017450	+	0	NA	promoter-TSS (NM_001318943)	promoter-TSS (NM_001318943)	-14	NM_001318943	4201		NM_014623	ENSG00000124733	MEA1	HYS|MEA	male-enhanced antigen 1	protein-coding
131282	chr2	96098521	96099430	+	0	NA	Intergenic	Intergenic	17596	NM_000682	151		NM_000682	ENSG00000274286	ADRA2B	ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR	adrenoceptor alpha 2B	protein-coding
87382	chr16	70452001	70452400	+	0	NA	Intergenic	AluSx|SINE|Alu	-2395	NM_145059	197258		NM_145059	ENSG00000157353	FCSK	1110046B12Rik|CDGF2|FUK	fucose kinase	protein-coding
101528	chr17	67855371	67856000	+	0	NA	intron (NM_182641, intron 2 of 27)	intron (NM_182641, intron 2 of 27)	30182	NM_004459	2186		NM_004459	ENSG00000171634	BPTF	FAC1|FALZ|NEDDFL|NURF301	bromodomain PHD finger transcription factor	protein-coding
234259	chrX	13137851	13138130	+	0	NA	Intergenic	L1PA3|LINE|L1	-93370	NM_174901	171484		NM_174901	ENSG00000187268	FAM9C	TEX39C	family with sequence similarity 9 member C	protein-coding
144075	chr20	33689901	33690830	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-3980	NM_005225	1869		NM_005225	ENSG00000101412	E2F1	E2F-1|RBAP1|RBBP3|RBP3	E2F transcription factor 1	protein-coding
104257	chr17	80755601	80756000	+	0	NA	intron (NM_020761, intron 6 of 33)	intron (NM_020761, intron 6 of 33)	49832	NR_110852	101928855		NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA
145473	chr20	43752501	43752950	+	0	NA	Intergenic	Intergenic	-25723	NM_176791	149699		NM_176791	ENSG00000124196	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1 like	protein-coding
160717	chr3	32423551	32425000	+	0	NA	intron (NM_138410, intron 1 of 4)	MLT1G3|LTR|ERVL-MaLR	32422	NM_138410	112616		NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding
123048	chr19	51312801	51313200	+	0	NA	intron (NM_001101372, intron 1 of 7)	intron (NM_001101372, intron 1 of 7)	1152	NM_001101372	402665		NM_001101372	ENSG00000142549	IGLON5	-	IgLON family member 5	protein-coding
132446	chr2	105851051	105851550	+	0	NA	promoter-TSS (NM_001004720)	promoter-TSS (NM_001004720)	-547	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
65337	chr14	50228021	50228280	+	0	NA	intron (NM_006939, intron 1 of 22)	AluSx|SINE|Alu	3428	NM_006939	6655		NM_006939	ENSG00000100485	SOS2	NS9|SOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding
32443	chr10	102611171	102611330	+	0	NA	intron (NM_001178133, intron 8 of 10)	L3|LINE|CR1	-33229	NM_030912	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
215922	chr8	8236171	8236350	+	0	NA	non-coding (NR_024361, exon 6 of 9)	non-coding (NR_024361, exon 6 of 9)	7690	NR_024362	286042		NR_024361	ENSG00000291049	FAM86B3P	-	family with sequence similarity 86, member A pseudogene	pseudo
137832	chr2	200507371	200507550	+	0	NA	intron (NM_001321547, intron 1 of 6)	MIR|SINE|MIR	2608	NM_001321547	130535		NM_152387	ENSG00000155729	KCTD18	6530404F10Rik	potassium channel tetramerization domain containing 18	protein-coding
53287	chr12	64399921	64400580	+	0	NA	Intergenic	LTR8|LTR|ERV1	-4142	NM_007235	11260		NM_007235	ENSG00000184575	XPOT	XPO3	exportin for tRNA	protein-coding
170319	chr3	184356771	184357130	+	0	NA	intron (NM_004366, intron 10 of 23)	intron (NM_004366, intron 10 of 23)	4655	NM_001171089	1181		NM_004366	ENSG00000114859	CLCN2	CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|FHA2|FHII|HALD2|LKPAT|clC-2	chloride voltage-gated channel 2	protein-coding
233739	chrX	1379301	1379900	+	0	NA	intron (NM_001267713, intron 8 of 9).2	intron (NM_001267713, intron 8 of 9).2	12513	NM_001636	293		NM_001636	ENSG00000169100	SLC25A6	AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y	solute carrier family 25 member 6	protein-coding
103737	chr17	78883371	78884380	+	0	NA	intron (NM_003255, intron 1 of 4)	intron (NM_003255, intron 1 of 4)	19326	NM_001243540	100653515		NM_001243540	ENSG00000178404	CEP295NL	DDC8|KIAA1731NL	CEP295 N-terminal like	protein-coding
221962	chr8	129972871	129973030	+	0	NA	intron (NM_001353269, intron 1 of 10)	intron (NM_001353269, intron 1 of 10)	-33139	NM_001353264	51571		NM_016623	ENSG00000153310	CYRIB	BM-009|CYRI|CYRI-B|FAM49B|L1	CYFIP related Rac1 interactor B	protein-coding
187070	chr5	140145571	140146350	+	0	NA	Intergenic	CpG	-11359	NR_130738	101929719		NR_130738	ENSG00000254363	LOC101929719	-	uncharacterized LOC101929719	ncRNA
228263	chr9	98036921	98037180	+	0	NA	Intergenic	L2c|LINE|L2	-19682	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
41623	chr11	66440171	66440330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-1402	NR_120589	65003		NM_016050	ENSG00000174547	MRPL11	CGI-113|L11MT|MRP-L11|uL11m	mitochondrial ribosomal protein L11	protein-coding
174817	chr4	48135551	48135850	+	0	NA	TTS (NM_003215)	TTS (NM_003215)	-1450	NM_003328	7294		NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding
37530	chr11	18631951	18632450	+	0	NA	intron (NM_194285, intron 1 of 5)	intron (NM_194285, intron 1 of 5)	2142	NM_194285	144108		NM_194285	ENSG00000179119	SPTY2D1	Spt2	SPT2 chromatin protein domain containing 1	protein-coding
156935	chr22	42311821	42312480	+	0	NA	Intergenic	Intergenic	-28223	NM_005650	6942		NM_005650	ENSG00000100207	TCF20	AR1|DDVIBA|SPBP|TCF-20	transcription factor 20	protein-coding
98996	chr17	48745301	48745680	+	0	NA	Intergenic	Intergenic	-16740	NM_006361	10481		NM_006361	ENSG00000159184	HOXB13	HPC9|PSGD	homeobox B13	protein-coding
205846	chr7	24909251	24909930	+	0	NA	intron (NM_015550, intron 1 of 22)	intron (NM_015550, intron 1 of 22)	-16969	NM_145320	26031		NM_015550	ENSG00000070882	OSBPL3	ORP-3|ORP3|OSBP3	oxysterol binding protein like 3	protein-coding
203105	chr6	166465401	166465800	+	0	NA	promoter-TSS (NR_046793)	promoter-TSS (NR_046793)	-217	NR_046793	100874353		NR_046793	ENSG00000232082	RPS6KA2-IT1	-	RPS6KA2 intronic transcript 1	ncRNA
102553	chr17	75843051	75844800	+	0	NA	intron (NM_199242, intron 1 of 31)	intron (NM_199242, intron 1 of 31)	479	NM_199242	201294		NM_199242	ENSG00000092929	UNC13D	FHL3|HLH3|HPLH3|Munc13-4	unc-13 homolog D	protein-coding
28781	chr10	62057301	62057700	+	0	NA	intron (NM_001244638, intron 3 of 6)	intron (NM_001244638, intron 3 of 6)	8143	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
95802	chr17	38727551	38729050	+	0	NA	3' UTR (NM_005937, exon 20 of 20)	3' UTR (NM_005937, exon 20 of 20)	-2041	NM_001136498	284106		NM_001136498	ENSG00000277972	CISD3	MiNT|Miner2	CDGSH iron sulfur domain 3	protein-coding
3	chr1	12201	12400	+	0	NA	intron (NR_046018, intron 1 of 2)	intron (NR_046018, intron 1 of 2)	426	NR_046018	100287102		NR_046018	ENSG00000290825	DDX11L1	-	DEAD/H-box helicase 11 like 1 (pseudogene)	pseudo
188908	chr5	160151071	160151230	+	0	NA	Intergenic	Intergenic	-31700	NM_001349732	114825		NM_052927	ENSG00000170234	PWWP2A	MST101	PWWP domain containing 2A	protein-coding
19737	chr1	181149301	181150400	+	0	NA	Intergenic	LTR79|LTR|ERVL	-24634	NR_125966	101928973		NR_125966	ENSG00000237292	LINC01732	-	long intergenic non-protein coding RNA 1732	ncRNA
29644	chr10	71849571	71849730	+	0	NA	intron (NM_002778, intron 1 of 13)	intron (NM_002778, intron 1 of 13)	1601	NM_002778	5660		NM_002778	ENSG00000197746	PSAP	GLBA|PARK24|PSAPD|SAP1|SAP2	prosaposin	protein-coding
161280	chr3	39290171	39290730	+	0	NA	Intergenic	Intergenic	-8715	NM_001171174	1524		NM_001337	ENSG00000168329	CX3CR1	CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28	C-X3-C motif chemokine receptor 1	protein-coding
18880	chr1	168145521	168146160	+	0	NA	Intergenic	Intergenic	-8173	NM_001349633	23432		NM_007369	ENSG00000143147	GPR161	RE2	G protein-coupled receptor 161	protein-coding
51224	chr12	50734701	50734930	+	0	NA	intron (NM_173602, intron 33 of 37)	MER20|DNA|hAT-Charlie	-29286	NM_005171	466		NM_005171	ENSG00000123268	ATF1	EWS-ATF1|FUS/ATF-1|TREB36	activating transcription factor 1	protein-coding
178634	chr4	152255421	152256050	+	0	NA	Intergenic	Intergenic	-81939	NR_104273	102191832		NR_104273	ENSG00000270751	FBXW7-AS1	DEAR|DEspR	FBXW7 antisense RNA 1	ncRNA
177422	chr4	112509371	112509780	+	0	NA	Intergenic	Intergenic	-5804	NR_161159	105377372		NR_161159		NEUROG2-AS1	-	NEUROG2 and ZGRF1 antisense RNA 1	ncRNA
185983	chr5	133396571	133396930	+	0	NA	intron (NM_015082, intron 4 of 15)	intron (NM_015082, intron 4 of 15)	30956	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
76953	chr15	78107051	78107350	+	0	NA	intron (NM_001301224, intron 3 of 4)	AluY|SINE|Alu	14615	NM_001101404	646892		NM_001101404	ENSG00000183476	SH2D7	-	SH2 domain containing 7	protein-coding
3832	chr1	16899151	16899980	+	0	NA	Intergenic	AluSz|SINE|Alu	3585	NR_004430	26871		NR_004430	ENSG00000206652	RNU1-1	HSD1|HU1-1|RNU1|RNU1A|RNU1A3|RNU1G4|Rnu1a1|U1|U1A1	RNA, U1 small nuclear 1	snRNA
61838	chr13	76667601	76667800	+	0	NA	Intergenic	Intergenic	218705	NM_138444	115207		NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding
79039	chr16	74901	75800	+	0	NA	Intergenic	Intergenic	-1669	NM_001015054	4350		NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding
212966	chr7	130966001	130967130	+	0	NA	intron (NR_109852, intron 4 of 5)	intron (NR_109852, intron 4 of 5)	53101	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
185212	chr5	120132371	120132530	+	0	NA	Intergenic	L1PA4|LINE|L1	-331828	NM_016644	51334		NM_016644	ENSG00000184838	PRR16	DSC54|LARGEN	proline rich 16	protein-coding
199796	chr6	127119851	127120150	+	0	NA	intron (NM_032784, intron 1 of 4)	intron (NM_032784, intron 1 of 4)	1329	NM_032784	84870		NM_032784	ENSG00000146374	RSPO3	CRISTIN1|PWTSR|THSD2	R-spondin 3	protein-coding
120885	chr19	45581421	45581980	+	0	NA	intron (NM_025136, intron 1 of 1)	LTR8|LTR|ERV1	3102	NM_025136	80207		NM_025136	ENSG00000125741	OPA3	MGA3	outer mitochondrial membrane lipid metabolism regulator OPA3	protein-coding
156502	chr22	41294101	41294300	+	0	NA	intron (NM_001317930, intron 1 of 15)	SVA_D|Retroposon|SVA	-7325	NM_017590	23264		NM_017590	ENSG00000100403	ZC3H7B	ROXAN1|RoXaN	zinc finger CCCH-type containing 7B	protein-coding
184176	chr5	95815221	95815700	+	0	NA	intron (NM_002064, intron 2 of 2)	intron (NM_002064, intron 2 of 2)	7266	NM_001118890	2745		NM_002064	ENSG00000173221	GLRX	GRX|GRX1	glutaredoxin	protein-coding
181455	chr5	41868651	41868750	+	0	NA	intron (NR_157114, intron 1 of 15)	AluYa5|SINE|Alu	-1330	NR_046635	100874002		NR_046635	ENSG00000248668	OXCT1-AS1	SARRAH	OXCT1 antisense RNA 1	ncRNA
130562	chr2	85718121	85718380	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	23892	NM_006433	10578		NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
188658	chr5	157246471	157246630	+	0	NA	intron (NM_005546, intron 15 of 16)	L2a|LINE|L2	-19573	NM_001291721	26999		NM_014376	ENSG00000055163	CYFIP2	DEE65|EIEE65|PIR121	cytoplasmic FMR1 interacting protein 2	protein-coding
23523	chr1	229068351	229068650	+	0	NA	Intergenic	Intergenic	106301	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
117228	chr19	19418901	19419600	+	0	NA	intron (NM_001384527, intron 1 of 11)	intron (NM_001384527, intron 1 of 11)	13575	NM_001384524	54815		NM_017660	ENSG00000167491	GATAD2A	p66alpha	GATA zinc finger domain containing 2A	protein-coding
52951	chr12	57457971	57458130	+	0	NA	TTS (NM_031479)	TTS (NM_031479)	-1735	NM_005269	2735		NM_005269	ENSG00000111087	GLI1	GLI|PAPA8|PPD1	GLI family zinc finger 1	protein-coding
154047	chr22	30590471	30590630	+	0	NA	intron (NM_001282328, intron 3 of 16)	intron (NM_001282328, intron 3 of 16)	1360	NM_001243225	23481		NM_014303	ENSG00000100029	PES1	NOP7|PES	pescadillo ribosomal biogenesis factor 1	protein-coding
200778	chr6	137873151	137873700	+	0	NA	intron (NM_006290, intron 2 of 8)	intron (NM_006290, intron 2 of 8)	-5192	NR_049793	100130476		NR_049793	ENSG00000237499	WAKMAR2	lnc-TNFAIP3	wound and keratinocyte migration associated lncRNA 2	ncRNA
106143	chr18	9594821	9595250	+	0	NA	exon (NM_005134, exon 3 of 20)	exon (NM_005134, exon 3 of 20)	19524	NM_001042388	9989		NM_005134	ENSG00000154845	PPP4R1	MEG1|PP4(Rmeg)|PP4R1	protein phosphatase 4 regulatory subunit 1	protein-coding
129093	chr2	65119021	65119730	+	0	NA	intron (NM_004161, intron 1 of 5)	AluSx1|SINE|Alu	10731	NM_004161	5861		NM_004161	ENSG00000138069	RAB1A	RAB1|YPT1	RAB1A, member RAS oncogene family	protein-coding
168210	chr3	141239221	141239480	+	0	NA	intron (NM_152282, intron 3 of 7)	intron (NM_152282, intron 3 of 7)	7525	NM_001037172	92370		NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding
230251	chr9	127897071	127897850	+	0	NA	promoter-TSS (NM_001287001)	promoter-TSS (NM_001287001)	-52	NM_001287003	30815		NM_013443	ENSG00000160408	ST6GALNAC6	SIAT7-F|SIAT7F|ST6GALNACVI	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding
107753	chr18	50356271	50356780	+	0	NA	Intergenic	MSTB2|LTR|ERVL-MaLR	-18521	NM_145060	220134		NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding
174311	chr4	38605471	38605630	+	0	NA	Intergenic	Intergenic	41547	NR_146991	105374411		NR_146991		LINC02278	-	long intergenic non-protein coding RNA 2278	ncRNA
65139	chr14	45085801	45086330	+	0	NA	intron (NM_017922, intron 1 of 13)	AluSq2|SINE|Alu	1949	NM_017922	55015		NM_017922	ENSG00000185246	PRPF39	-	pre-mRNA processing factor 39	protein-coding
61131	chr13	48562151	48563250	+	0	NA	Intergenic	Intergenic	18201	NR_051983	100129597		NR_051983	ENSG00000233610	LINC00462	-	long intergenic non-protein coding RNA 462	ncRNA
121110	chr19	45954021	45954280	+	0	NA	intron (NM_002516, intron 2 of 3)	intron (NM_002516, intron 2 of 3)	19715	NM_002516	4858		NM_002516	ENSG00000104967	NOVA2	ANOVA|NEDASB|NOVA-2|NOVA3	NOVA alternative splicing regulator 2	protein-coding
153921	chr22	30321951	30322250	+	0	NA	intron (NM_001204240, intron 1 of 8)	AluSz|SINE|Alu	4841	NM_031937	83874		NM_031937	ENSG00000099992	TBC1D10A	EPI64|TBC1D10|dJ130H16.1|dJ130H16.2	TBC1 domain family member 10A	protein-coding
204440	chr7	3400051	3400150	+	0	NA	intron (NM_152744, intron 1 of 44)	L1M4|LINE|L1	98848	NM_152744	221935		NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
161334	chr3	39877951	39878050	+	0	NA	intron (NM_015460, intron 1 of 16)	L1PA3|LINE|L1	68340	NM_001284425	25924		NM_015460	ENSG00000170011	MYRIP	SLAC2-C|SLAC2C	myosin VIIA and Rab interacting protein	protein-coding
50174	chr12	45987951	45988050	+	0	NA	intron (NM_004719, intron 1 of 14)	intron (NM_004719, intron 1 of 14)	2574	NM_004719	9169		NM_004719	ENSG00000139218	SCAF11	CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP	SR-related CTD associated factor 11	protein-coding
191217	chr6	5668771	5668930	+	0	NA	intron (NR_110842, intron 2 of 3)	AluSq2|SINE|Alu	26422	NR_110842	101927950		NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
221616	chr8	125644071	125644980	+	0	NA	Intergenic	MIRb|SINE|MIR	212316	NM_001282985	10221		NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding
107904	chr18	57427771	57428130	+	0	NA	Intergenic	CpG	-7424	NM_004852	9480		NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding
12254	chr1	100445401	100446600	+	0	NA	intron (NM_001319212, intron 7 of 13)	MamGypsy2-I|LTR|Gypsy	-92139	NM_022049	54112		NM_022049	ENSG00000181656	GPR88	COCPMR|STRG	G protein-coupled receptor 88	protein-coding
74351	chr15	58626971	58627330	+	0	NA	intron (NM_001320570, intron 9 of 14)	L1ME2z|LINE|L1	66457	NR_073415	664618		NR_002927		HSP90AB4P	HSP90Bd	heat shock protein 90 alpha family class B member 4, pseudogene	pseudo
218157	chr8	41916171	41916330	+	0	NA	Intergenic	L1MB3|LINE|L1	-19509	NM_001142446	286		NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2|ankyrin-1	ankyrin 1	protein-coding
206993	chr7	38339501	38339700	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1977	NR_040085	100506776		NR_040085	ENSG00000281103	TRG-AS1	TCRGV	T cell receptor gamma locus antisense RNA 1	ncRNA
220513	chr8	100672571	100672930	+	0	NA	Intergenic	L2a|LINE|L2	-23085	NM_152628	169166		NM_152628	ENSG00000174226	SNX31	-	sorting nexin 31	protein-coding
70685	chr14	103098471	103098630	+	0	NA	Intergenic	MIRb|SINE|MIR	-1594	NM_001077594	91828		NM_001077594	ENSG00000205436	EXOC3L4	C14orf73	exocyst complex component 3 like 4	protein-coding
239454	chrY	56716551	56717050	+	0	NA	Intergenic	(AATGGAATGG)n|Simple_repeat|Simple_repeat	-237455	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
164681	chr3	67599171	67599330	+	0	NA	intron (NM_001177599, intron 2 of 10)	intron (NM_001177599, intron 2 of 10)	55362	NM_003848	8801		NM_003848	ENSG00000172340	SUCLG2	G-SCS|GBETA|GTPSCS	succinate-CoA ligase GDP-forming subunit beta	protein-coding
178733	chr4	153079851	153080350	+	0	NA	Intergenic	Intergenic	-72063	NM_001375517	23321		NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
36097	chr11	3027751	3027850	+	0	NA	intron (NR_165428, intron 9 of 22)	LTR13|LTR|ERVK	-1594	NR_046580	100852407		NR_046580	ENSG00000247473	CARS1-AS1	CARS-AS1	CARS1 antisense RNA 1	ncRNA
173082	chr4	6221701	6222300	+	0	NA	intron (NR_037863, intron 1 of 3)	CpG	21267	NR_037863	285484		NR_037863		JAKMIP1-DT	LINC02495	JAKMIP1 divergent transcript	ncRNA
161001	chr3	37287021	37287280	+	0	NA	intron (NM_001172713, intron 5 of 22)	AluSx1|SINE|Alu	-42955	NR_149029	152048		NM_152532	ENSG00000270194	GOLGA4-AS1	-	GOLGA4 antisense RNA 1	ncRNA
169949	chr3	179083951	179084250	+	0	NA	Intergenic	L2a|LINE|L2	-11587	NM_001375827	64393		NM_022470	ENSG00000172667	ZMAT3	PAG608|WIG-1|WIG1	zinc finger matrin-type 3	protein-coding
54699	chr12	93426071	93427380	+	0	NA	intron (NM_003348, intron 1 of 3)	intron (NM_003348, intron 1 of 3)	15222	NM_003348	7334		NM_003348	ENSG00000177889	UBE2N	HEL-S-71|UBC13|UBCHBEN|UBCHBEN; UBC13|UbcH-ben|UbcH13	ubiquitin conjugating enzyme E2 N	protein-coding
83343	chr16	25020051	25020380	+	0	NA	Intergenic	(AAGG)n|Simple_repeat|Simple_repeat	-4846	NM_018054	55114		NM_018054	ENSG00000140750	ARHGAP17	MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15	Rho GTPase activating protein 17	protein-coding
228686	chr9	107639521	107639650	+	0	NA	Intergenic	Intergenic	-149816	NM_001314052	9314		NM_004235	ENSG00000136826	KLF4	EZF|GKLF	KLF transcription factor 4	protein-coding
91747	chr17	6754371	6754530	+	0	NA	promoter-TSS (NM_001353135)	promoter-TSS (NM_001353135)	-997	NM_001353135	54739		NM_017523	ENSG00000132530	XAF1	BIRC4BP|HSXIAPAF1|XIAPAF1	XIAP associated factor 1	protein-coding
66545	chr14	61860301	61860650	+	0	NA	intron (NM_001367652, intron 1 of 6)	intron (NM_001367652, intron 1 of 6)	47772	NM_001367656	83851		NM_031914	ENSG00000139973	SYT16	CHR14SYT|SYT14L|Strep14|syt14r	synaptotagmin 16	protein-coding
85974	chr16	57345801	57346000	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-12883	NM_002990	6367		NM_002990	ENSG00000102962	CCL22	A-152E5.1|ABCD-1|DC/B-CK|MDC|SCYA22|STCP-1	C-C motif chemokine ligand 22	protein-coding
107654	chr18	48991671	48992800	+	0	NA	Intergenic	Intergenic	-31468	NR_148999	100129878		NR_148999	ENSG00000264269	DYM-AS1	-	DYM antisense RNA 1	ncRNA
198287	chr6	99882271	99882630	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-111588	NR_038384	728012		NR_038384	ENSG00000229315	MCHR2-AS1	-	MCHR2 antisense RNA 1	ncRNA
11921	chr1	93488351	93488450	+	0	NA	intron (NM_001164473, intron 1 of 16)	5S|rRNA|rRNA	40269	NM_001164473	54874		NM_017737	ENSG00000137942	FNBP1L	C1orf39|TOCA1	formin binding protein 1 like	protein-coding
128180	chr2	53785021	53785400	+	0	NA	intron (NM_001164165, intron 1 of 9)	L2a|LINE|L2	-1721	NM_001127398	27248		NM_015701	ENSG00000068912	ERLEC1	C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB	endoplasmic reticulum lectin 1	protein-coding
15929	chr1	151790001	151791450	+	0	NA	promoter-TSS (NR_146293)	promoter-TSS (NR_146293)	-24	NR_146293	109729141		NR_146292	ENSG00000203288	TDRKH-AS1	-	TDRKH antisense RNA 1	ncRNA
167830	chr3	133663471	133664130	+	0	NA	intron (NM_001354703, intron 1 of 22)	intron (NM_001354703, intron 1 of 22)	1802	NM_001354703	7018		NM_001063	ENSG00000091513	TF	HEL-S-71p|PRO1557|PRO2086|TFQTL1	transferrin	protein-coding
130475	chr2	85551721	85552430	+	0	NA	intron (NM_000821, intron 10 of 14)	intron (NM_000821, intron 10 of 14)	9418	NM_001311312	2677		NM_000821	ENSG00000115486	GGCX	VKCFD1	gamma-glutamyl carboxylase	protein-coding
77621	chr15	85405171	85405330	+	0	NA	intron (NM_007200, intron 1 of 36)	U5|snRNA|snRNA	24647	NM_007200	11214		NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding
237202	chrX	108020571	108021100	+	0	NA	Intergenic	L1M3f|LINE|L1	-24135	NM_001170553	340547		NM_182607	ENSG00000101842	VSIG1	1700062D20Rik|GPA34|dJ889N15.1	V-set and immunoglobulin domain containing 1	protein-coding
12432	chr1	103514921	103515450	+	0	NA	intron (NR_168319, intron 1 of 5)	intron (NR_168319, intron 1 of 5)	10323	NR_168321	101928436		NM_001286997	ENSG00000224613	RNPC3-DT	-	RNPC3 divergent transcript	ncRNA
143920	chr20	32652571	32653260	+	0	NA	intron (NM_182584, intron 1 of 5)	intron (NM_182584, intron 1 of 5)	21026	NM_182584	284805		NM_182584	ENSG00000198547	C20orf203	-	chromosome 20 open reading frame 203	protein-coding
42887	chr11	73361471	73361630	+	0	NA	intron (NM_014786, intron 12 of 20)	intron (NM_014786, intron 12 of 20)	-14849	NM_152222	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
32819	chr10	109937251	109938100	+	0	NA	Intergenic	L2a|LINE|L2	-14122	NM_001167604	7511		NM_020383	ENSG00000108039	XPNPEP1	APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1	X-prolyl aminopeptidase 1	protein-coding
88954	chr16	87846371	87846530	+	0	NA	intron (NM_003486, intron 2 of 9)	MLT1A|LTR|ERVL-MaLR	-7446	NR_162122	113218509		NR_162122		MIR11401	-	microRNA 11401	ncRNA
72586	chr15	34971871	34972430	+	0	NA	Intergenic	AluSz|SINE|Alu	-2408	NM_014691	9716		NM_014691	ENSG00000021776	AQR	IBP160|fSAP164	aquarius intron-binding spliceosomal factor	protein-coding
51712	chr12	53203271	53203430	+	0	NA	intron (NM_000889, intron 1 of 15)	L1MB5|LINE|L1	3901	NR_104181	3695		NM_000889	ENSG00000139626	ITGB7	-	integrin subunit beta 7	protein-coding
141629	chr2	241692751	241693250	+	0	NA	intron (NM_001330161, intron 2 of 7)	AluSg|SINE|Alu	5980	NM_001330161	84289		NM_032329	ENSG00000168395	ING5	p28ING5	inhibitor of growth family member 5	protein-coding
71182	chr14	105050251	105051150	+	0	NA	3' UTR (NM_013345, exon 4 of 4)	3' UTR (NM_013345, exon 4 of 4)	14730	NM_001278696	29933		NM_013345	ENSG00000183484	GPR132	G2A	G protein-coupled receptor 132	protein-coding
135877	chr2	171042601	171043250	+	0	NA	intron (NM_012290, intron 11 of 20)	L2b|LINE|L2	24048	NM_001136555	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
205879	chr7	25101121	25101380	+	0	NA	Intergenic	AluSq2|SINE|Alu	24010	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
168037	chr3	136912071	136912230	+	0	NA	intron (NM_001291999, intron 1 of 3)	L1M4c|LINE|L1	-18352	NM_001190796	4690		NM_006153	ENSG00000158092	NCK1	NCK|NCKalpha|nck-1	NCK adaptor protein 1	protein-coding
35386	chr11	1335971	1337680	+	0	NA	Intergenic	CpG	27117	NR_029409	255512		NR_029409	ENSG00000255153	TOLLIP-DT	TOLLIP-AS1	TOLLIP divergent transcript	ncRNA
69115	chr14	92518551	92519000	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	4994	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
190852	chr6	1624201	1624400	+	0	NA	intron (NM_001253846, intron 10 of 10)	CpG	14385	NM_001453	2296		NM_001453	ENSG00000054598	FOXC1	ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
77570	chr15	84984721	84985200	+	0	NA	intron (NM_173454, intron 1 of 20)	Tigger4a|DNA|TcMar-Tigger	2986	NM_173454	5151		NM_002605	ENSG00000073417	PDE8A	HsT19550	phosphodiesterase 8A	protein-coding
221134	chr8	118509271	118509500	+	0	NA	intron (NM_207506, intron 2 of 3)	intron (NM_207506, intron 2 of 3)	-111616	NR_038210	552860		NR_038210		SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA
63261	chr13	113951971	113952130	+	0	NA	Intergenic	Intergenic	22026	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
8944	chr1	44219971	44220130	+	0	NA	exon (NM_001034023, exon 10 of 11)	exon (NM_001034023, exon 10 of 11)	6579	NM_019100	55929		NM_019100	ENSG00000178028	DMAP1	DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4	DNA methyltransferase 1 associated protein 1	protein-coding
26412	chr10	17144821	17145080	+	0	NA	3' UTR (NM_001351221, exon 9 of 9)	3' UTR (NM_001351221, exon 9 of 9)	-15139	NM_001081	8029		NM_001081	ENSG00000107611	CUBN	IFCR|IGS|IGS1|MGA1|gp280	cubilin	protein-coding
112148	chr19	5619021	5619680	+	0	NA	intron (NM_014649, intron 2 of 20)	intron (NM_014649, intron 2 of 20)	3426	NM_014649	9667		NM_014649	ENSG00000130254	SAFB2	-	scaffold attachment factor B2	protein-coding
44597	chr11	108468771	108468950	+	0	NA	Intergenic	AluSx|SINE|Alu	-1329	NR_147053	160140		NM_152587	ENSG00000166323	C11orf65	MFI	chromosome 11 open reading frame 65	protein-coding
62577	chr13	99980071	99980830	+	0	NA	Intergenic	CpG	-1334	NM_007129	7546		NM_007129	ENSG00000043355	ZIC2	HPE5	Zic family member 2	protein-coding
74896	chr15	63598201	63598800	+	0	NA	intron (NM_203373, intron 1 of 1)	intron (NM_203373, intron 1 of 1)	1113	NM_203373	283807		NM_203373	ENSG00000197361	FBXL22	Fbl22	F-box and leucine rich repeat protein 22	protein-coding
38142	chr11	35349171	35349800	+	0	NA	intron (NM_001195728, intron 1 of 11)	intron (NM_001195728, intron 1 of 11)	70073	NM_004171	6506		NM_004171	ENSG00000110436	SLC1A2	DEE41|EAAT2|EIEE41|GLT-1|GLT1|HBGT	solute carrier family 1 member 2	protein-coding
202477	chr6	158239801	158240530	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	71815	NM_207118	404672		NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding
75015	chr15	64032401	64032950	+	0	NA	intron (NM_001385000, intron 2 of 11)	AluJb|SINE|Alu	13810	NM_001384999	23604		NM_014326	ENSG00000035664	DAPK2	DRP-1|DRP1	death associated protein kinase 2	protein-coding
49905	chr12	39467121	39468180	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-24530	NM_017641	55605		NM_017641	ENSG00000139116	KIF21A	CFEOM1|FEOM1|FEOM3A	kinesin family member 21A	protein-coding
24736	chr1	248404201	248404900	+	0	NA	Intergenic	(AT)n|Simple_repeat|Simple_repeat	-1445	NM_030904	26696		NM_030904	ENSG00000175143	OR2T1	OR1-25	olfactory receptor family 2 subfamily T member 1	protein-coding
85627	chr16	54928071	54929800	+	0	NA	promoter-TSS (NR_034106)	promoter-TSS (NR_034106)	-157	NR_034106	643911		NM_001308963	ENSG00000245694	CRNDE	CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5	colorectal neoplasia differentially expressed	ncRNA
132479	chr2	105919671	105920250	+	0	NA	Intergenic	Intergenic	68113	NM_001004720	8440		NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
180141	chr5	1342151	1342600	+	0	NA	intron (NM_030782, intron 2 of 16)	intron (NM_030782, intron 2 of 16)	2724	NM_030782	81037		NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding
197665	chr6	85458251	85458550	+	0	NA	intron (NM_002526, intron 1 of 8)	intron (NM_002526, intron 1 of 8)	8317	NM_002526	4907		NM_002526	ENSG00000135318	NT5E	CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT	5'-nucleotidase ecto	protein-coding
215450	chr7	157881171	157881730	+	0	NA	intron (NM_130842, intron 11 of 21)	MLT1B|LTR|ERVL-MaLR	26865	NR_038966	100506585		NR_038966		PTPRN2-AS1	-	PTPRN2 antisense RNA 1	ncRNA
150843	chr21	44058051	44058550	+	0	NA	intron (NM_003274, intron 5 of 22)	L2a|LINE|L2	-16024	NM_001351709	7109		NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|NEDMISS|TMEM1|TRS130|TRS30	trafficking protein particle complex subunit 10	protein-coding
43141	chr11	75293401	75293800	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	41586	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA
188371	chr5	151782151	151782530	+	0	NA	intron (NM_198395, intron 1 of 11)	intron (NM_198395, intron 1 of 11)	-10164	NR_132345	100652758		NM_001278082	ENSG00000275765	LOC100652758	-	uncharacterized LOC100652758	ncRNA
63592	chr14	20479251	20480300	+	0	NA	Intergenic	Intergenic	10369	NM_000270	4860		NM_000270	ENSG00000198805	PNP	NP|PRO1837|PUNP	purine nucleoside phosphorylase	protein-coding
169588	chr3	170869401	170871130	+	0	NA	promoter-TSS (NM_001099645)	promoter-TSS (NM_001099645)	-70	NM_001320451	200916		NM_001099645	ENSG00000163584	RPL22L1	-	ribosomal protein L22 like 1	protein-coding
197801	chr6	87695421	87696500	+	0	NA	intron (NM_018064, intron 1 of 4)	AluJb|SINE|Alu	6273	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
92010	chr17	7457671	7459480	+	0	NA	TTS (NM_000747)	TTS (NM_000747)	13514	NM_000747	1140		NM_000747	ENSG00000170175	CHRNB1	ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS	cholinergic receptor nicotinic beta 1 subunit	protein-coding
199768	chr6	125906121	125906610	+	0	NA	intron (NM_001199620, intron 12 of 17)	intron (NM_001199620, intron 12 of 17)	-12890	NM_001199622	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
152070	chr22	19727621	19727880	+	0	NA	Intergenic	Intergenic	4211	NM_000407	2812		NM_000407	ENSG00000203618	GP1BB	BDPLT1|BS|CD42C|GPIBB|GPIbbeta	glycoprotein Ib platelet subunit beta	protein-coding
25281	chr10	6147401	6147600	+	0	NA	intron (NM_001282630, intron 1 of 14)	intron (NM_001282630, intron 1 of 14)	1252	NM_001282630	5209		NM_004566	ENSG00000170525	PFKFB3	IPFK2|PFK2|iPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
113706	chr19	10427571	10428700	+	0	NA	intron (NM_001111307, intron 1 of 14)	AluJo|SINE|Alu	-2710	NM_001111308	5141		NM_006202	ENSG00000065989	PDE4A	DPDE2|PDE4|PDE46	phosphodiesterase 4A	protein-coding
21289	chr1	204450421	204451350	+	0	NA	intron (NM_001377335, intron 14 of 35)	intron (NM_001377335, intron 14 of 35)	-39068	NM_032833	84919		NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
84785	chr16	31025951	31026050	+	0	NA	Intergenic	Intergenic	-7095	NM_001272096	6810		NM_004604	ENSG00000103496	STX4	DFNB123|STX4A|p35-2	syntaxin 4	protein-coding
178116	chr4	141329101	141329340	+	0	NA	intron (NR_121625, intron 1 of 3)	intron (NR_121625, intron 1 of 3)	3397	NR_121625	100507639		NR_121625	ENSG00000248810	LINC02432	-	long intergenic non-protein coding RNA 2432	ncRNA
212998	chr7	130999001	130999800	+	0	NA	intron (NR_109855, intron 2 of 4)	intron (NR_109855, intron 2 of 4)	85936	NR_109780	100506860		NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA
148727	chr21	7096801	7097700	+	0	NA	Intergenic	Intergenic	32824	NM_001322975	102723360		NM_001322975		LOC102723360	-	uncharacterized LOC102723360	ncRNA
122889	chr19	50516601	50516880	+	0	NA	TTS (NM_001080457)	TTS (NM_001080457)	-2056	NM_001024656	554235		NM_001024656	ENSG00000204653	ASPDH	-	aspartate dehydrogenase domain containing	protein-coding
106392	chr18	13381701	13383880	+	0	NA	intron (NM_001378098, intron 1 of 5)	intron (NM_001378098, intron 1 of 5)	44187	NM_001378098	753		NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding
154229	chr22	31538721	31539080	+	0	NA	intron (NM_001007467, intron 4 of 32)	L2|LINE|L2	42364	NM_001258326	9814		NM_014775	ENSG00000198089	SFI1	PISD|PPP1R139|hSfi1p	SFI1 centrin binding protein	protein-coding
97213	chr17	42763301	42763800	+	0	NA	TTS (NM_005854)	TTS (NM_005854)	-2293	NR_024462	100190938		NR_024461	ENSG00000197291	RAMP2-AS1	-	RAMP2 antisense RNA 1	ncRNA
142071	chr20	2351801	2352530	+	0	NA	Intergenic	AluYc|SINE|Alu	-28736	NM_001254734	343641		NM_198994	ENSG00000166948	TGM6	SCA35|TG6|TGM3L|TGY|dJ734P14.3	transglutaminase 6	protein-coding
43848	chr11	87352721	87353380	+	0	NA	Intergenic	Intergenic	315116	NM_001168724	65084		NM_022918	ENSG00000166575	TMEM135	PMP52	transmembrane protein 135	protein-coding
96416	chr17	40168051	40169000	+	0	NA	intron (NM_007359, intron 11 of 13)	intron (NM_007359, intron 11 of 13)	6592	NR_106926	102466986		NR_106926	ENSG00000284144	MIR6866	hsa-mir-6866	microRNA 6866	ncRNA
36129	chr11	3108021	3108680	+	0	NA	intron (NM_145638, intron 6 of 20)	intron (NM_145638, intron 6 of 20)	-50927	NM_001378136	833		NM_001751	ENSG00000110619	CARS1	CARS|CYSRS|MCDDBH|MDBH|MGC:11246	cysteinyl-tRNA synthetase 1	protein-coding
171186	chr3	195683571	195683730	+	0	NA	intron (NR_003265, intron 13 of 14)	intron (NR_003265, intron 13 of 14)	-4848	NR_122105	440993		NM_001013714		MIR570HG	LINC00969	MIR570 host gene	ncRNA
21938	chr1	207868601	207869880	+	0	NA	Intergenic	CpG	41885	NM_001025109	947		NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding
186702	chr5	138754871	138755280	+	0	NA	5' UTR (NM_001323982, exon 2 of 19)	5' UTR (NM_001323982, exon 2 of 19)	-1151	NR_134244	105379194		NR_134244	ENSG00000253404	CTNNA1-AS1	-	CTNNA1 antisense RNA 1	ncRNA
129399	chr2	68837071	68838000	+	0	NA	Intergenic	Intergenic	33862	NM_014482	27302		NM_014482	ENSG00000163217	BMP10	-	bone morphogenetic protein 10	protein-coding
94732	chr17	30779051	30779430	+	0	NA	intron (NR_144395, intron 8 of 9)	AluSx|SINE|Alu	45452	NM_015986	51379		NM_015986	ENSG00000176390	CRLF3	CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2	cytokine receptor like factor 3	protein-coding
191030	chr6	3154521	3155800	+	0	NA	intron (NM_001310315, intron 3 of 3)	intron (NM_001310315, intron 3 of 3)	2384	NM_001310315	7280		NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding
60150	chr13	39951451	39951750	+	0	NA	Intergenic	Intergenic	-230209	NR_046870	100874127		NR_046870		LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA
125487	chr2	12497951	12499150	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	-218322	NM_021643	28951		NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding
19571	chr1	179193871	179194030	+	0	NA	intron (NM_007314, intron 1 of 11)	AluY|SINE|Alu	35727	NM_001168238	27		NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding
233528	chrX	18801	19980	+	0	NA	Intergenic	CpG	-256966	NM_001370372	55344		NM_018390	ENSG00000182378	PLCXD1	LL0XNC01-136G2.1	phosphatidylinositol specific phospholipase C X domain containing 1	protein-coding
116921	chr19	18827871	18828230	+	0	NA	Intergenic	AluJr|SINE|Alu	-3909	NM_001297549	5976		NM_002911	ENSG00000005007	UPF1	HUPF1|NORF1|RENT1|UTF|pNORF1|smg-2	UPF1 RNA helicase and ATPase	protein-coding
228328	chr9	98707301	98707500	+	0	NA	intron (NM_005458, intron 1 of 18)	CpG	1535	NM_005458	9568		NM_005458	ENSG00000136928	GABBR2	DEE59|EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS	gamma-aminobutyric acid type B receptor subunit 2	protein-coding
203282	chr6	169804401	169804850	+	0	NA	Intergenic	Intergenic	-5800	NR_026781	401288		NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA
217134	chr8	25383771	25384330	+	0	NA	intron (NM_024940, intron 40 of 51)	L1ME1|LINE|L1	-22538	NR_159962	105379331		NR_159962		LOC105379331	-	uncharacterized LOC105379331	ncRNA
95961	chr17	39097971	39098130	+	0	NA	intron (NM_020405, intron 7 of 13)	AluSq2|SINE|Alu	41031	NR_036551	100131347		NR_036551	ENSG00000293194	RDM1P5	-	RDM1 pseudogene 5	pseudo
51516	chr12	52213171	52214150	+	0	NA	promoter-TSS (NR_164133)	promoter-TSS (NR_164133)	-77	NR_164130	283403		NM_001242696		LINC02874	C12orf80	long intergenic non-protein coding RNA 2874	ncRNA
91969	chr17	7402271	7402430	+	0	NA	TTS (NM_152766)	TTS (NM_152766)	1747	NM_152766	254863		NM_152766	ENSG00000205544	TMEM256	C17orf61	transmembrane protein 256	protein-coding
203913	chr7	1506901	1507730	+	0	NA	Intergenic	AluY|SINE|Alu	-2926	NM_001080453	26173		NM_001080453	ENSG00000164880	INTS1	INT1|NDCAGF|NET28	integrator complex subunit 1	protein-coding
74659	chr15	61071371	61071630	+	0	NA	intron (NM_134261, intron 1 of 10)	G-rich|Low_complexity|Low_complexity	157802	NM_134261	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
52112	chr12	54193371	54193600	+	0	NA	Intergenic	Intergenic	-4491	NM_001243788	23583		NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding
72782	chr15	39932771	39932930	+	0	NA	Intergenic	L2|LINE|L2	-1265	NM_001013703	440275		NM_001013703	ENSG00000128829	EIF2AK4	GCN2|PVOD2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding
136973	chr2	190433621	190434130	+	0	NA	intron (NM_001375988, intron 2 of 7)	intron (NM_001375988, intron 2 of 7)	25017	NM_001375986	54842		NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
195625	chr6	37791271	37792130	+	0	NA	Intergenic	MIRc|SINE|MIR	-28027	NM_021943	60685		NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
73307	chr15	41889771	41889930	+	0	NA	intron (NM_016642, intron 4 of 67)	intron (NM_016642, intron 4 of 67)	-2927	NR_135681	105370792		NR_135681	ENSG00000174171	LOC105370792	-	uncharacterized LOC105370792	ncRNA
126624	chr2	28804401	28804800	+	0	NA	Intergenic	Intergenic	-6234	NM_182756	245711		NM_182756	ENSG00000163806	SPDYA	RINGO3|RINGOA|SPDY1|SPY1	speedy/RINGO cell cycle regulator family member A	protein-coding
54391	chr12	89897021	89897280	+	0	NA	Intergenic	L1MA7|LINE|L1	-50543	NR_135019	105369891		NR_135019	ENSG00000257725	LINC02399	-	long intergenic non-protein coding RNA 2399	ncRNA
112239	chr19	5719301	5721630	+	0	NA	promoter-TSS (NM_152784)	promoter-TSS (NM_152784)	-13	NM_001276480	9361		NM_004793	ENSG00000196365	LONP1	CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON	lon peptidase 1, mitochondrial	protein-coding
24532	chr1	244842151	244842450	+	0	NA	intron (NM_198076, intron 3 of 3)	intron (NM_198076, intron 3 of 3)	6642	NM_198076	116228		NM_198076	ENSG00000203667	COX20	FAM36A|MC4DN11	cytochrome c oxidase assembly factor COX20	protein-coding
635	chr1	1337521	1338200	+	0	NA	intron (NM_004421, intron 14 of 14)	intron (NM_004421, intron 14 of 14)	1848	NR_106866	102466740		NR_106866	ENSG00000284372	MIR6808	hsa-mir-6808	microRNA 6808	ncRNA
4693	chr1	23098651	23099180	+	0	NA	intron (NM_033631, intron 3 of 4)	intron (NM_033631, intron 3 of 4)	54610	NR_036057	100422866		NR_036057	ENSG00000263793	MIR3115	mir-3115	microRNA 3115	ncRNA
58849	chr12	132906171	132906330	+	0	NA	Intergenic	Intergenic	18408	NR_110919	101928530		NR_110919	ENSG00000236617	CHFR-DT	-	CHFR divergent transcript	ncRNA
77329	chr15	82511571	82512130	+	0	NA	intron (NR_026811, intron 1 of 7)	intron (NR_026811, intron 1 of 7)	2145	NR_102747	727751		NR_102747		LOC727751	-	golgin A2 pseudogene	pseudo
108637	chr18	76477221	76477480	+	0	NA	intron (NM_014643, intron 1 of 6)	intron (NM_014643, intron 1 of 6)	-14302	NR_136504	101927989		NR_136504	ENSG00000265778	ZNF516-AS1	-	ZNF516 antisense RNA 1	ncRNA
133984	chr2	130823201	130823400	+	0	NA	Intergenic	Intergenic	-13614	NM_015320	50649		NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|SMIM39|STM6	Rho guanine nucleotide exchange factor 4	protein-coding
123067	chr19	51368601	51369680	+	0	NA	promoter-TSS (NM_152353)	promoter-TSS (NM_152353)	-137	NM_152353	125875		NM_152353	ENSG00000160318	CLDND2	-	claudin domain containing 2	protein-coding
238639	chrX	153969901	153970370	+	0	NA	TTS (NR_046608)	TTS (NR_046608)	1370	NR_046608	100873990		NR_046608		HCFC1-AS1	-	HCFC1 antisense RNA 1	ncRNA
35718	chr11	1945721	1946150	+	0	NA	Intergenic	Intergenic	-1397	NM_021134	6150		NM_021134	ENSG00000214026	MRPL23	L23MRP|RPL23|RPL23L|uL23m	mitochondrial ribosomal protein L23	protein-coding
200495	chr6	135497171	135499150	+	0	NA	promoter-TSS (NM_001350504)	promoter-TSS (NM_001350504)	359	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
96175	chr17	39724721	39724980	+	0	NA	exon (NM_001382787, exon 20 of 27)	exon (NM_001382787, exon 20 of 27)	-1645	NR_039881	100616132		NR_039881	ENSG00000265178	MIR4728	-	microRNA 4728	ncRNA
196026	chr6	42031051	42031950	+	0	NA	intron (NM_001287434, intron 1 of 4)	intron (NM_001287434, intron 1 of 4)	17394	NM_001287434	896		NM_001760	ENSG00000112576	CCND3	-	cyclin D3	protein-coding
154172	chr22	31305021	31305480	+	0	NA	Intergenic	MER1B|DNA|hAT-Charlie	-12716	NM_001135911	113791		NM_052880	ENSG00000100100	PIK3IP1	HGFL|TrIP|hHGFL(S)	phosphoinositide-3-kinase interacting protein 1	protein-coding
69476	chr14	95426971	95427450	+	0	NA	intron (NM_001363692, intron 17 of 17)	LTR13|LTR|ERVK	73330	NM_001384282	161176		NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding
146408	chr20	49384471	49384850	+	0	NA	intron (NM_004975, intron 1 of 1)	intron (NM_004975, intron 1 of 1)	98008	NM_004975	3745		NM_004975	ENSG00000158445	KCNB1	DEE26|DRK1|Kv2.1	potassium voltage-gated channel subfamily B member 1	protein-coding
131105	chr2	89840071	89840650	+	0	NA	Intergenic	(TGGAA)n|Simple_repeat|Simple_repeat	-202453	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
63796	chr14	21308221	21309200	+	0	NA	intron (NM_020366, intron 7 of 24)	LTR9B|LTR|ERV1	-8843	NM_001377950	57096		NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	RPGR interacting protein 1	protein-coding
72991	chr15	40598801	40599000	+	0	NA	intron (NM_144508, intron 1 of 25)	AluJb|SINE|Alu	4651	NM_170589	57082		NM_020380	ENSG00000137812	KNL1	AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105	kinetochore scaffold 1	protein-coding
67594	chr14	72439571	72439950	+	0	NA	intron (NM_001370288, intron 3 of 16)	LTR33|LTR|ERVL	-77060	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA
66458	chr14	61551351	61551680	+	0	NA	TTS (NM_006255)	TTS (NM_006255)	18679	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
177657	chr4	121272651	121273200	+	0	NA	Intergenic	Intergenic	-45442	NM_001244764	79931		NM_024873	ENSG00000050730	TNIP3	ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding
223264	chr8	143714901	143715100	+	0	NA	Intergenic	AluSx|SINE|Alu	-1349	NM_139021	225689		NM_139021	ENSG00000181085	MAPK15	ERK7|ERK8	mitogen-activated protein kinase 15	protein-coding
113502	chr19	10095571	10097600	+	0	NA	intron (NM_031917, intron 1 of 5)	CpG-13656	6072	NM_001321411	83854		NM_031917	ENSG00000130812	ANGPTL6	AGF|ARP5	angiopoietin like 6	protein-coding
85730	chr16	56657251	56658550	+	0	NA	promoter-TSS (NM_005949)	promoter-TSS (NM_005949)	-43	NM_001301272	4494		NM_005949	ENSG00000198417	MT1F	MT1	metallothionein 1F	protein-coding
220132	chr8	94822431	94824050	+	0	NA	promoter-TSS (NR_073445)	promoter-TSS (NR_073445)	-47	NM_017864	55656		NM_017864	ENSG00000164941	INTS8	C8orf52|INT8|NEDCHS	integrator complex subunit 8	protein-coding
191854	chr6	15255471	15256350	+	0	NA	intron (NM_001267040, intron 1 of 17)	intron (NM_001267040, intron 1 of 17)	7055	NM_001267040	3720		NM_004973	ENSG00000008083	JARID2	DIDDF|JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
28465	chr10	49272801	49273280	+	0	NA	Intergenic	Intergenic	25853	NR_108038	100506769		NR_108038		C10orf71-AS1	-	C10orf71 antisense RNA 1	ncRNA
94536	chr17	29576951	29577250	+	0	NA	intron (NM_001085454, intron 12 of 20)	intron (NM_001085454, intron 12 of 20)	8399	NM_001346081	90313		NM_138349	ENSG00000167543	TP53I13	DSCP1	tumor protein p53 inducible protein 13	protein-coding
231737	chr9	132000901	132001110	+	0	NA	intron (NM_001253881, intron 3 of 6)	AluJo|SINE|Alu	78862	NM_001253882	9442		NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|NEDSCAC|TRAP37	mediator complex subunit 27	protein-coding
79487	chr16	771771	771930	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	1667	NR_030384	724032		NR_030384	ENSG00000207579	MIR662	MIRN662|hsa-mir-662	microRNA 662	ncRNA
101739	chr17	69416071	69416230	+	0	NA	intron (NM_002758, intron 1 of 11)	intron (NM_002758, intron 1 of 11)	1453	NM_002758	5608		NM_002758	ENSG00000108984	MAP2K6	MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
130798	chr2	86913821	86914550	+	0	NA	intron (NM_001078170, intron 1 of 22).2	(GGC)n|Simple_repeat|Simple_repeat	373	NM_001078170	729857		NM_001078170	ENSG00000185304	RGPD2	NUP358|RANBP2L2|RGP2	RANBP2 like and GRIP domain containing 2	protein-coding
179459	chr4	184450071	184450230	+	0	NA	intron (NM_002199, intron 1 of 8)	MER46C|DNA|TcMar-Tigger	24400	NM_002199	3660		NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding
186506	chr5	138342571	138343250	+	0	NA	intron (NM_001350194, intron 3 of 4)	AluSg|SINE|Alu	-4555	NM_001364026	995		NM_001790	ENSG00000158402	CDC25C	CDC25|PPP1R60	cell division cycle 25C	protein-coding
56822	chr12	120222601	120222800	+	0	NA	exon (NM_001243756, exon 5 of 11)	exon (NM_001243756, exon 5 of 11)	21409	NR_038924	100506649		NR_038924	ENSG00000255857	PXN-AS1	EyeLinc4	PXN antisense RNA 1	ncRNA
155216	chr22	37879421	37879680	+	0	NA	intron (NM_001242923, intron 9 of 10)	L2a|LINE|L2	-26747	NM_033386	85377		NM_033386	ENSG00000100139	MICALL1	MICAL-L1|MIRAB13	MICAL like 1	protein-coding
115296	chr19	14574151	14574680	+	0	NA	Intergenic	MER91C|DNA|hAT-Tip100	-2349	NM_004146	4713		NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18|MC1DN39	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
177907	chr4	129095821	129096750	+	0	NA	intron (NM_001099783, intron 1 of 5)	intron (NM_001099783, intron 1 of 5)	133	NM_001099783	132321		NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
197350	chr6	73450151	73450300	+	0	NA	intron (NM_138441, intron 1 of 4)	AluSp|SINE|Alu	2072	NM_138441	115004		NM_138441	ENSG00000164430	CGAS	C6orf150|D4|MB21D1|h-cGAS	cyclic GMP-AMP synthase	protein-coding
192915	chr6	27668471	27668980	+	0	NA	Intergenic	Intergenic	-25310	NR_038294	100507173		NR_038292	ENSG00000281706	LINC01012	-	long intergenic non-protein coding RNA 1012	ncRNA
56993	chr12	120567801	120568200	+	0	NA	intron (NM_001330474, intron 13 of 16)	AluJb|SINE|Alu	13398	NM_198202	51367		NM_015918	ENSG00000167272	POP5	HSPC004|RPP2|RPP20|hPop5	POP5 homolog, ribonuclease P/MRP subunit	protein-coding
126723	chr2	30185201	30185800	+	0	NA	Intergenic	L1ME3B|LINE|L1	-1934	NR_145719	109616960		NR_145719	ENSG00000207187	SNORA10B	-	small nucleolar RNA, H/ACA box 10B	snoRNA
49229	chr12	19186701	19186950	+	0	NA	intron (NM_001256470, intron 3 of 31)	intron (NM_001256470, intron 3 of 31)	-18500	NM_001256787	54477		NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding
129520	chr2	69677901	69678300	+	0	NA	intron (NM_001320698, intron 2 of 14)	Tigger1|DNA|TcMar-Tigger	34292	NM_001320698	307		NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding
28490	chr10	49943271	49943430	+	0	NA	non-coding (NR_110767, exon 2 of 8)	non-coding (NR_110767, exon 2 of 8)	1297	NR_158652	100652748		NM_001290117	ENSG00000204152	TIMM23B	-	translocase of inner mitochondrial membrane 23 homolog B	protein-coding
226649	chr9	74742901	74743150	+	0	NA	intron (NM_001177311, intron 32 of 38)	intron (NM_001177311, intron 32 of 38)	127491	NM_001365023	6096		NM_006914	ENSG00000198963	RORB	EIG15|NR1F2|ROR-BETA|RORbeta|RZR-BETA|RZRB|bA133M9.1	RAR related orphan receptor B	protein-coding
160332	chr3	27680071	27680230	+	0	NA	Intergenic	AluJb|SINE|Alu	42173	NM_001278182	8320		NM_005442	ENSG00000163508	EOMES	TBR2	eomesodermin	protein-coding
186887	chr5	139560571	139562260	+	0	NA	promoter-TSS (NM_003339)	promoter-TSS (NM_003339)	76	NM_003339	7322		NM_003339	ENSG00000131508	UBE2D2	E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B	ubiquitin conjugating enzyme E2 D2	protein-coding
32484	chr10	102672371	102672930	+	0	NA	Intergenic	Intergenic	28155	NR_144321	81603		NM_030912	ENSG00000171206	TRIM8	FSGSNEDS|GERP|RNF27	tripartite motif containing 8	protein-coding
39590	chr11	61293051	61293350	+	0	NA	intron (NM_152718, intron 1 of 19)	AluSp|SINE|Alu	2116	NM_152718	220001		NM_152718	ENSG00000167992	VWCE	URG11|VWC1	von Willebrand factor C and EGF domains	protein-coding
132836	chr2	110677601	110679030	+	0	NA	promoter-TSS (NM_001278617)	promoter-TSS (NM_001278617)	-208	NM_001278617	699		NM_004336	ENSG00000169679	BUB1	BUB1A|BUB1L|MCPH30|hBUB1	BUB1 mitotic checkpoint serine/threonine kinase	protein-coding
101865	chr17	74212281	74214280	+	0	NA	promoter-TSS (NR_026914)	promoter-TSS (NR_026914)	41	NR_026914	85001		NM_032915	ENSG00000246731	MGC16275	-	uncharacterized protein MGC16275	ncRNA
175462	chr4	72319771	72319930	+	0	NA	intron (NM_014243, intron 8 of 21)	intron (NM_014243, intron 8 of 21)	249371	NM_014243	9508		NM_014243	ENSG00000156140	ADAMTS3	ADAMTS-4|HKLLS3	ADAM metallopeptidase with thrombospondin type 1 motif 3	protein-coding
137442	chr2	196935451	196935830	+	0	NA	Intergenic	Intergenic	-8933	NM_024989	80055		NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|NEDDSBA|SPG67	post-GPI attachment to proteins inositol deacylase 1	protein-coding
236372	chrX	70943471	70943630	+	0	NA	Intergenic	L1PA3|LINE|L1	-12454	NM_032803	84889		NM_032803	ENSG00000165349	SLC7A3	ATRC3|CAT-3|CAT3	solute carrier family 7 member 3	protein-coding
3053	chr1	12160671	12160830	+	0	NA	Intergenic	AluJb|SINE|Alu	-6193	NR_107000	102465836		NR_107000	ENSG00000283789	MIR7846	hsa-mir-7846	microRNA 7846	ncRNA
80759	chr16	3162171	3162630	+	0	NA	Intergenic	AluSg7|SINE|Alu	18109	NR_132322	197350		NR_132322	ENSG00000293410	CASP16P	CASP16	caspase 16, pseudogene	pseudo
93188	chr17	17806551	17806980	+	0	NA	intron (NM_030665, intron 4 of 5)	MLT1H|LTR|ERVL-MaLR	6780	NR_106835	102465466		NR_106835	ENSG00000274111	MIR6777	hsa-mir-6777	microRNA 6777	ncRNA
103312	chr17	77889151	77889450	+	0	NA	Intergenic	Intergenic	-5213	NR_028337	400624		NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA
199592	chr6	119145271	119145430	+	0	NA	intron (NM_001288576, intron 1 of 15)	LTR33|LTR|ERVL	3843	NM_001288576	79632		NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding
132511	chr2	106090951	106091450	+	0	NA	Intergenic	Intergenic	25512	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
156706	chr22	41698401	41698600	+	0	NA	TTS (NR_160905)	TTS (NR_160905)	-1003	NM_152513	150365		NM_152513	ENSG00000167077	MEI1	HYDM3|SPATA38	meiotic double-stranded break formation protein 1	protein-coding
15205	chr1	149304501	149304750	+	0	NA	Intergenic	Intergenic	-33658	NR_158171	100996716		NR_158171		SEC22B2P	CH17-189H20.1|SEC22B2	SEC22 homolog B2, pseudogene	pseudo
130766	chr2	86827951	86828250	+	0	NA	intron (NM_172101, intron 5 of 6)	MIRb|SINE|MIR	-19704	NM_001145873	925		NM_001768	ENSG00000153563	CD8A	CD8|CD8alpha|IMD116|Leu2|p32	CD8 subunit alpha	protein-coding
238701	chrX	154084451	154084550	+	0	NA	intron (NM_001316337, intron 2 of 4)	L2c|LINE|L2	12469	NM_001369394	4204		NM_004992	ENSG00000169057	MECP2	AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT	methyl-CpG binding protein 2	protein-coding
104200	chr17	80471871	80472530	+	0	NA	intron (NM_002522, intron 3 of 4)	intron (NM_002522, intron 3 of 4)	4407	NM_002522	4884		NM_002522	ENSG00000171246	NPTX1	NP1|SCA50	neuronal pentraxin 1	protein-coding
209642	chr7	77758901	77759640	+	0	NA	intron (NM_198467, intron 3 of 7)	intron (NM_198467, intron 3 of 7)	39164	NM_032936	85025		NM_032936	ENSG00000135211	TMEM60	C7orf35|DC32	transmembrane protein 60	protein-coding
205436	chr7	16933921	16934350	+	0	NA	Intergenic	Intergenic	-52152	NM_176813	155465		NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding
62731	chr13	105908701	105908900	+	0	NA	Intergenic	LTR78B|LTR|ERV1	201970	NR_120418	144920		NR_046391	ENSG00000226620	LINC00343	LINC00344|NCRNA00343|NCRNA00344	long intergenic non-protein coding RNA 343	ncRNA
73936	chr15	51192671	51192900	+	0	NA	intron (NR_146310, intron 1 of 2)	intron (NR_146310, intron 1 of 2)	-49405	NR_039863	100616369		NR_039863	ENSG00000266593	MIR4713	-	microRNA 4713	ncRNA
154404	chr22	35319051	35319350	+	0	NA	intron (NR_156428, intron 2 of 13)	intron (NR_156428, intron 2 of 13)	-16440	NR_037471	100500826		NR_037471	ENSG00000266320	MIR3909	mir-3909	microRNA 3909	ncRNA
39565	chr11	61130971	61131300	+	0	NA	3' UTR (NM_017966, exon 5 of 5)	3' UTR (NM_017966, exon 5 of 5)	28646	NM_014207	921		NM_014207	ENSG00000110448	CD5	LEU1|T1	CD5 molecule	protein-coding
190919	chr6	2852021	2853050	+	0	NA	Intergenic	Intergenic	1572	NR_039788	100616285		NR_039788	ENSG00000266750	MIR4645	mir-4645	microRNA 4645	ncRNA
93881	chr17	21118101	21118300	+	0	NA	Intergenic	Intergenic	-8728	NM_015510	25979		NM_015510	ENSG00000109016	DHRS7B	CGI-93|SDR32C1	dehydrogenase/reductase 7B	protein-coding
21547	chr1	206117321	206117930	+	0	NA	promoter-TSS (NM_000707)	promoter-TSS (NM_000707)	-237	NM_000707	553		NM_000707	ENSG00000198049	AVPR1B	AVPR3|V1bR|VPR3	arginine vasopressin receptor 1B	protein-coding
121228	chr19	46633621	46635600	+	0	NA	promoter-TSS (NM_033258)	promoter-TSS (NM_033258)	72	NM_033258	94235		NM_033258	ENSG00000167414	GNG8	HG3E	G protein subunit gamma 8	protein-coding
129377	chr2	68797421	68797680	+	0	NA	intron (NM_001364819, intron 4 of 10)	L1PB4|LINE|L1	22640	NM_001166276	9938		NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
5503	chr1	25765171	25765750	+	0	NA	intron (NM_001385185, intron 6 of 10)	intron (NM_001385185, intron 6 of 10)	-34733	NM_206926	57190		NM_020451	ENSG00000162430	SELENON	CFTD|CMYP3|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding
115268	chr19	14545271	14545830	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	15956	NM_138501	9524		NM_004868	ENSG00000099797	TECR	GPSN2|MRT14|SC2|TER	trans-2,3-enoyl-CoA reductase	protein-coding
175575	chr4	75653471	75653630	+	0	NA	intron (NM_203504, intron 7 of 10)	intron (NM_203504, intron 7 of 10)	19609	NM_012297	9908		NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding
124557	chr2	445201	445600	+	0	NA	Intergenic	Intergenic	47255	NR_146437	727944		NR_146436	ENSG00000223985	LINC01874	-	long intergenic non-protein coding RNA 1874	ncRNA
167054	chr3	126910401	126910600	+	0	NA	intron (NM_032343, intron 5 of 7)	intron (NM_032343, intron 5 of 7)	-78094	NM_032242	5361		NM_032242	ENSG00000114554	PLXNA1	DWOPNED|NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding
117110	chr19	19201051	19201350	+	0	NA	TTS (NM_001300945)	TTS (NM_001300945)	2214	NM_176880	126382		NM_176880	ENSG00000184162	NR2C2AP	TRA16	nuclear receptor 2C2 associated protein	protein-coding
157190	chr22	43090221	43090930	+	0	NA	Intergenic	Intergenic	-1147	NR_027779	25809		NM_012263	ENSG00000100271	TTLL1	C22orf7|HS323M22B|TPGS3	TTL family tubulin polyglutamylase complex subunit L1	protein-coding
99360	chr17	49903421	49904080	+	0	NA	Intergenic	Intergenic	-55733	NM_001077504	255061		NM_170685	ENSG00000176358	TAC4	EK|HK-1|HK1|PPT-C	tachykinin precursor 4	protein-coding
214669	chr7	150947421	150947680	+	0	NA	intron (NM_172057, intron 8 of 10)	CpG	8254	NM_001204798	3757		NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding
8413	chr1	40421401	40421600	+	0	NA	intron (NM_022733, intron 9 of 9)	intron (NM_022733, intron 9 of 9)	24700	NM_001198980	64744		NM_022733	ENSG00000084070	SMAP2	SMAP1L	small ArfGAP2	protein-coding
217616	chr8	29994921	29995450	+	0	NA	Intergenic	L3|LINE|CR1	-37837	NR_036104	100422876		NR_036104	ENSG00000264788	MIR3148	mir-3148	microRNA 3148	ncRNA
101951	chr17	74566121	74566430	+	0	NA	intron (NM_001324073, intron 1 of 3)	intron (NM_001324073, intron 1 of 3)	1068	NM_001324073	100130520		NM_001324073	ENSG00000284690	CD300H	CD300Hs	CD300H molecule (gene/pseudogene)	protein-coding
54856	chr12	95478821	95479280	+	0	NA	intron (NM_001317183, intron 2 of 9)	FAM|SINE|Alu	4898	NM_001317183	10988		NM_006838	ENSG00000111142	METAP2	MAP2|MNPEP|p67eIF2	methionyl aminopeptidase 2	protein-coding
2724	chr1	10658651	10658750	+	0	NA	intron (NM_017766, intron 6 of 15)	intron (NM_017766, intron 6 of 15)	137946	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
31686	chr10	97497841	97500600	+	0	NA	promoter-TSS (NM_022362)	promoter-TSS (NM_022362)	296	NM_024954	80019		NM_024954	ENSG00000165886	UBTD1	-	ubiquitin domain containing 1	protein-coding
135899	chr2	171260401	171260850	+	0	NA	Intergenic	L1ME1|LINE|L1	-29332	NM_001136554	9874		NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding
168128	chr3	138881201	138881400	+	0	NA	Intergenic	Intergenic	-46372	NM_006219	5291		NM_006219	ENSG00000051382	PIK3CB	P110BETA|PI3K|PI3KBETA|PIK3C1	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding
205897	chr7	25120651	25120950	+	0	NA	3' UTR (NM_018947, exon 3 of 3)	3' UTR (NM_018947, exon 3 of 3)	4460	NM_018947	54205		NM_018947	ENSG00000172115	CYCS	CYC|HCS|THC4	cytochrome c, somatic	protein-coding
110235	chr19	1772951	1773250	+	0	NA	intron (NM_001080488, intron 1 of 1)	HAL1|LINE|L1	19594	NM_001080488	390874		NM_001080488	ENSG00000205922	ONECUT3	OC3	one cut homeobox 3	protein-coding
131564	chr2	96802151	96802880	+	0	NA	intron (NM_020184, intron 5 of 6)	MIR|SINE|MIR	4237	NR_036074	100422928		NR_036074	ENSG00000264157	MIR3127	mir-3127	microRNA 3127	ncRNA
122253	chr19	49031421	49032180	+	0	NA	promoter-TSS (NM_001319065)	promoter-TSS (NM_001319065)	-13	NR_024244	100170228		NR_024244		SNAR-G2	-	small NF90 (ILF3) associated RNA G2	snRNA
45093	chr11	117085121	117085780	+	0	NA	intron (NM_001281748, intron 1 of 24)	L1MC5|LINE|L1	12978	NM_025164	23387		NM_025164	ENSG00000160584	SIK3	L19|QSK|SEMDK|SIK-3	SIK family kinase 3	protein-coding
208563	chr7	72786471	72786630	+	0	NA	intron (NM_001145440, intron 6 of 13)	intron (NM_001145440, intron 6 of 13)	41650	NM_001145440	441250		NM_001145440	ENSG00000277149	TYW1B	LINC00069|NCRNA00069|RSAFD2	tRNA-yW synthesizing protein 1 homolog B	protein-coding
19620	chr1	179953451	179955600	+	0	NA	promoter-TSS (NM_014810)	promoter-TSS (NM_014810)	-285	NM_014810	9857		NM_014810	ENSG00000135837	CEP350	CAP350|GM133	centrosomal protein 350	protein-coding
163803	chr3	52407921	52408330	+	0	NA	intron (NM_004656, intron 4 of 16)	intron (NM_004656, intron 4 of 16)	1883	NM_004656	8314		NM_004656	ENSG00000163930	BAP1	HUCEP-13|KURIS|TPDS1|UBM2|UCHL2|UVM2|hucep-6	BRCA1 associated protein 1	protein-coding
147191	chr20	57089721	57090200	+	0	NA	Intergenic	Intergenic	-123736	NR_110631	102723590		NR_110631		BMP7-AS1	-	BMP7 antisense RNA 1	ncRNA
99395	chr17	49991101	49991780	+	0	NA	3' UTR (NM_005220, exon 3 of 3)	3' UTR (NM_005220, exon 3 of 3)	3784	NM_005220	1747		NM_005220	ENSG00000064195	DLX3	AI4|TDO	distal-less homeobox 3	protein-coding
93723	chr17	19528501	19528700	+	0	NA	Intergenic	AluSz|SINE|Alu	-5254	NM_018242	55244		NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding
92147	chr17	7651721	7652430	+	0	NA	intron (NM_001678, intron 1 of 6)	intron (NM_001678, intron 1 of 6)	1149	NM_001678	482		NM_001678	ENSG00000129244	ATP1B2	AMOG	ATPase Na+/K+ transporting subunit beta 2	protein-coding
214580	chr7	150624351	150624450	+	0	NA	TTS (NM_001244072)	TTS (NM_001244072)	7985	NM_024711	474344		NM_024711	ENSG00000133561	GIMAP6	IAN-2|IAN-6|IAN2|IAN6	GTPase, IMAP family member 6	protein-coding
104081	chr17	80250871	80251230	+	0	NA	intron (NM_001166348, intron 15 of 16)	AluJb|SINE|Alu	-9802	NM_020954	57674		NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding
81327	chr16	4736321	4736580	+	0	NA	intron (NM_139170, intron 1 of 9)	intron (NM_139170, intron 1 of 9)	1913	NM_139170	146562		NM_139170	ENSG00000166246	DNAAF8	C16orf71|Daap1	dynein axonemal assembly factor 8	protein-coding
101601	chr17	68105871	68106600	+	0	NA	intron (NR_027418, intron 2 of 5)	intron (NR_027418, intron 2 of 5)	4680	NR_027418	100499466		NR_027418		LINC00674	CALA	long intergenic non-protein coding RNA 674	ncRNA
202499	chr6	158387151	158387250	+	0	NA	intron (NM_001007466, intron 1 of 12)	intron (NM_001007466, intron 1 of 12)	64218	NR_145798	109623462		NR_145798		SNORA116	-	small nucleolar RNA, H/ACA box 116	snoRNA
132497	chr2	106028221	106028580	+	0	NA	Intergenic	Intergenic	-37288	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
78646	chr15	94271221	94271500	+	0	NA	intron (NR_169532, intron 1 of 23)	intron (NR_169532, intron 1 of 23)	39799	NR_169528	55784		NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding
92349	chr17	8175551	8177530	+	0	NA	promoter-TSS (NM_183065)	promoter-TSS (NM_183065)	-160	NM_032354	84314		NM_032354	ENSG00000179029	TMEM107	GRVS638|JBTS29|MKS13|PRO1268	transmembrane protein 107	protein-coding
81129	chr16	4390201	4390400	+	0	NA	intron (NM_001351729, intron 7 of 27)	intron (NM_001351729, intron 7 of 27)	18452	NM_138440	114990		NM_138440	ENSG00000168140	VASN	SLITL2	vasorin	protein-coding
85121	chr16	34581171	34581620	+	0	NA	Intergenic	Intergenic	-199915	NR_158158	102724928		NR_158158		CCNYL3	CCNYL1B	cyclin Y like 3 (pseudogene)	pseudo
139481	chr2	224401621	224402150	+	0	NA	5' UTR (NM_024785, exon 1 of 3)	5' UTR (NM_024785, exon 1 of 3)	109	NM_024785	79843		NM_024785	ENSG00000124019	FAM124B	-	family with sequence similarity 124 member B	protein-coding
204830	chr7	5699501	5700650	+	0	NA	intron (NM_207111, intron 13 of 16)	intron (NM_207111, intron 13 of 16)	11835	NR_106934	102466203		NR_106934	ENSG00000283419	MIR6874	hsa-mir-6874	microRNA 6874	ncRNA
11174	chr1	87317551	87317650	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-11280	NM_006769	8543		NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding
57985	chr12	124109771	124109930	+	0	NA	intron (NM_001347902, intron 2 of 4)	MLT1J|LTR|ERVL-MaLR	136635	NM_001347902	100533183		NM_001204299	ENSG00000178882	ZNF664-RFLNA	-	ZNF664-RFLNA readthrough	protein-coding
205391	chr7	16078171	16078330	+	0	NA	Intergenic	Intergenic	-132236	NR_038946	100506025		NR_038946	ENSG00000229688	CRPPA-AS1	ISPD-AS1	CRPPA antisense RNA 1	ncRNA
38218	chr11	36410401	36410600	+	0	NA	intron (NM_001160167, intron 3 of 8)	MIRb|SINE|MIR	9503	NM_001160169	79899		NM_024841	ENSG00000135362	PRR5L	PROTOR2	proline rich 5 like	protein-coding
114016	chr19	10877371	10877530	+	0	NA	intron (NM_001370089, intron 1 of 14)	AluSz|SINE|Alu	5021	NM_001370089	10498		NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding
154096	chr22	30968501	30970130	+	0	NA	promoter-TSS (NM_001303256)	promoter-TSS (NM_001303256)	104	NR_152868	55000		NM_017903	ENSG00000253352	TUG1	LINC00080|NCRNA00080|TI-227H	taurine up-regulated 1	protein-coding
118956	chr19	38841001	38841200	+	0	NA	intron (NM_001533, intron 6 of 12)	intron (NM_001533, intron 6 of 12)	8886	NM_001533	3191		NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding
64642	chr14	31273801	31274030	+	0	NA	Intergenic	AluSx1|SINE|Alu	-66122	NM_015382	25831		NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding
78428	chr15	92724051	92724470	+	0	NA	Intergenic	LTR33|LTR|ERVL	-68485	NM_207446	400451		NM_207446	ENSG00000185442	FAM174B	-	family with sequence similarity 174 member B	protein-coding
230087	chr9	127519271	127519800	+	0	NA	intron (NM_022833, intron 5 of 13)	intron (NM_022833, intron 5 of 13)	49538	NM_022833	64855		NM_022833	ENSG00000136830	NIBAN2	C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6	niban apoptosis regulator 2	protein-coding
220964	chr8	113691821	113691900	+	0	NA	Intergenic	Intergenic	-254921	NM_001363185	114788		NM_052900	ENSG00000164796	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
42688	chr11	72630071	72630750	+	0	NA	intron (NM_001146209, intron 3 of 31)	intron (NM_001146209, intron 3 of 31)	12033	NM_001143839	5138		NM_002599	ENSG00000186642	PDE2A	CGS-PDE|IDDPADS|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding
100089	chr17	58311821	58312450	+	0	NA	exon (NM_024418, exon 16 of 31)	exon (NM_024418, exon 16 of 31)	-13315	NR_038410	100506779		NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	ncRNA
117069	chr19	19043521	19043830	+	0	NA	intron (NM_033415, intron 2 of 7)	intron (NM_033415, intron 2 of 7)	-9831	NM_001352071	10147		NM_014884	ENSG00000064607	SUGP2	SFRS14|SRFS14	SURP and G-patch domain containing 2	protein-coding
232206	chr9	134334001	134334400	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	7745	NM_002957	6256		NM_002957	ENSG00000186350	RXRA	NR2B1|RXR-alpha|RXRalpha	retinoid X receptor alpha	protein-coding
48937	chr12	12719551	12719650	+	0	NA	intron (NM_004064, intron 2 of 2)	intron (NM_004064, intron 2 of 2)	2232	NM_004064	1027		NM_004064	ENSG00000111276	CDKN1B	CDKN4|KIP1|MEN1B|MEN4|P27KIP1	cyclin dependent kinase inhibitor 1B	protein-coding
146064	chr20	47489121	47489900	+	0	NA	Intergenic	L1ME4b|LINE|L1	-12377	NM_181659	8202		NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding
153558	chr22	26641621	26642380	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-15482	NR_033321	440823		NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript	ncRNA
83384	chr16	26597951	26598850	+	0	NA	Intergenic	Intergenic	-468527	NM_001145545	162083		NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
167440	chr3	129068501	129068950	+	0	NA	Intergenic	LTR12C|LTR|ERV1	7946	NM_000174	2815		NM_000174	ENSG00000169704	GP9	CD42a|GPIX	glycoprotein IX platelet	protein-coding
199747	chr6	125802401	125803530	+	0	NA	intron (NR_126386, intron 1 of 2)	intron (NR_126386, intron 1 of 2)	12005	NM_001199621	135112		NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding
85828	chr16	56997351	56998500	+	0	NA	intron (NR_169520, intron 1 of 47)	intron (NR_169520, intron 1 of 47)	8368	NM_001384953	84166		NM_032206	ENSG00000140853	NLRC5	CLR16.1|NOD27|NOD4	NLR family CARD domain containing 5	protein-coding
50921	chr12	49332921	49333650	+	0	NA	intron (NM_001008223, intron 1 of 1)	CpG	3903	NM_001008223	338761		NM_001008223	ENSG00000186897	C1QL4	C1QTNF11|CTRP11	complement C1q like 4	protein-coding
118606	chr19	36770101	36770400	+	0	NA	intron (NM_001193552, intron 1 of 4)	MER21B|LTR|ERVL	2557	NM_001193552	342892		NM_001193552	ENSG00000267041	ZNF850	ZNF850P	zinc finger protein 850	protein-coding
143627	chr20	31770071	31770950	+	0	NA	intron (NM_012112, intron 6 of 17)	intron (NM_012112, intron 6 of 17)	31220	NM_012112	22974		NM_012112	ENSG00000088325	TPX2	C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100	TPX2 microtubule nucleation factor	protein-coding
218100	chr8	38992221	38992680	+	0	NA	intron (NM_078473, intron 3 of 3)	AluJo|SINE|Alu	4059	NM_078473	83877		NM_031940	ENSG00000169490	TM2D2	BLP1	TM2 domain containing 2	protein-coding
210661	chr7	100490821	100491630	+	0	NA	intron (NM_173564, intron 6 of 6)	AluJr|SINE|Alu	7298	NM_173564	222950		NM_173564	ENSG00000166924	NYAP1	C7orf51	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein-coding
130330	chr2	84988471	84989050	+	0	NA	intron (NM_020122, intron 1 of 6)	MIRb|SINE|MIR	17599	NM_020122	56888		NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding
98581	chr17	47725221	47726080	+	0	NA	Intergenic	Intergenic	-7586	NM_013351	30009		NM_013351	ENSG00000073861	TBX21	IMD88|T-PET|T-bet|TBET|TBLYM	T-box transcription factor 21	protein-coding
159209	chr3	12891721	12892730	+	0	NA	Intergenic	Intergenic	-7014	NR_136189	105376955		NR_136189	ENSG00000232746	LINC02022	-	long intergenic non-protein coding RNA 2022	ncRNA
207681	chr7	45154551	45155250	+	0	NA	Intergenic	Intergenic	-2891	NM_005856	10268		NM_005856	ENSG00000122679	RAMP3	-	receptor activity modifying protein 3	protein-coding
289	chr1	945801	946550	+	0	NA	exon (NM_015658, exon 16 of 19)	exon (NM_015658, exon 16 of 19)	13081	NM_015658	26155		NM_015658	ENSG00000188976	NOC2L	NET15|NET7|NIR|PPP1R112	NOC2 like nucleolar associated transcriptional repressor	protein-coding
80279	chr16	2238671	2239550	+	0	NA	TTS (NM_001919)	TTS (NM_001919)	2666	NM_001301680	1775		NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding
137711	chr2	197515051	197517030	+	0	NA	promoter-TSS (NM_001100819)	promoter-TSS (NM_001100819)	-26	NM_015387	25843		NM_015387	ENSG00000115540	MOB4	2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3	MOB family member 4, phocein	protein-coding
10224	chr1	62754171	62754330	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-29856	NM_178221	84938		NM_032852	ENSG00000125703	ATG4C	APG4-C|APG4C|AUTL1|AUTL3|HsAPG4C	autophagy related 4C cysteine peptidase	protein-coding
29683	chr10	72048201	72049230	+	0	NA	Intergenic	Intergenic	39836	NM_001244950	9806		NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein-coding
200982	chr6	139371521	139371850	+	0	NA	TTS (NM_001168389)	TTS (NM_001168389)	2528	NM_001168389	10370		NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding
210805	chr7	100870221	100870680	+	0	NA	exon (NM_003302, exon 5 of 9)	exon (NM_003302, exon 5 of 9)	2414	NR_106935	102466755		NR_106935	ENSG00000283821	MIR6875	hsa-mir-6875	microRNA 6875	ncRNA
84800	chr16	31065351	31065450	+	0	NA	promoter-TSS (NM_001172669)	promoter-TSS (NM_001172669)	-312	NM_001172670	79759		NM_024706	ENSG00000167394	ZNF668	NEDGEF	zinc finger protein 668	protein-coding
217962	chr8	38292571	38292930	+	0	NA	intron (NM_023034, intron 16 of 23)	AluY|SINE|Alu	-23518	NM_001354454	84513		NM_032483	ENSG00000147535	PLPP5	DPPL1|HTPAP|PPAPDC1B	phospholipid phosphatase 5	protein-coding
172426	chr4	1860171	1860330	+	0	NA	Intergenic	AluJb|SINE|Alu	-4094	NM_012318	3954		NM_012318	ENSG00000168924	LETM1	CONDMIM|KHE|Mdm38|SLC55A1	leucine zipper and EF-hand containing transmembrane protein 1	protein-coding
48455	chr12	9742681	9743930	+	0	NA	Intergenic	Intergenic	-10006	NM_001253750	160365		NM_172004	ENSG00000293488	CLECL1P	CLECL1|DCAL-1|DCAL1	C-type lectin like 1, pseudogene	pseudo
188899	chr5	160021071	160021230	+	0	NA	intron (NM_001282500, intron 2 of 7)	MER5A|DNA|hAT-Charlie	12011	NM_003314	7265		NM_003314	ENSG00000113312	TTC1	TPR1	tetratricopeptide repeat domain 1	protein-coding
186381	chr5	135027371	135027530	+	0	NA	TTS (NM_002653)	TTS (NM_002653)	-5824	NR_161235	100996485		NR_161235	ENSG00000224186	PITX1-AS1	C5orf66	PITX1 antisense RNA 1	ncRNA
112167	chr19	5652751	5653050	+	0	NA	intron (NM_001320571, intron 7 of 18)	intron (NM_001320571, intron 7 of 18)	27338	NM_001365761	125988		NM_205767	ENSG00000174917	MICOS13	C19orf70|MIC12|MIC13|P117|QIL1	mitochondrial contact site and cristae organizing system subunit 13	protein-coding
200213	chr6	131281321	131282150	+	0	NA	3' UTR (NM_016377, exon 8 of 8)	3' UTR (NM_016377, exon 8 of 8)	31331	NM_138633	9465		NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding
194911	chr6	34759171	34759830	+	0	NA	intron (NM_003093, intron 2 of 5)	Charlie1a|DNA|hAT-Charlie	1995	NM_003093	6631		NM_003093	ENSG00000124562	SNRPC	U1C|Yhc1	small nuclear ribonucleoprotein polypeptide C	protein-coding
149089	chr21	15797451	15797950	+	0	NA	intron (NM_001352560, intron 5 of 23)	L2c|LINE|L2	67718	NM_001352561	29761		NM_013396	ENSG00000155313	USP25	USP21	ubiquitin specific peptidase 25	protein-coding
198051	chr6	90195201	90195600	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	101443	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
89404	chr16	88824321	88824780	+	0	NA	intron (NM_000512, intron 11 of 13)	intron (NM_000512, intron 11 of 13)	-12622	NM_001030018	353		NM_000485	ENSG00000198931	APRT	AMP|APRTD	adenine phosphoribosyltransferase	protein-coding
9307	chr1	46492921	46493180	+	0	NA	intron (NM_172225, intron 2 of 5)	intron (NM_172225, intron 2 of 5)	3214	NM_172225	127343		NM_147192	ENSG00000197587	DMBX1	Atx|MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
129871	chr2	73076621	73076880	+	0	NA	intron (NM_015470, intron 3 of 4)	L2c|LINE|L2	-5038	NM_001371740	94097		NM_144579	ENSG00000144040	SFXN5	BBG-TCC|SLC56A5	sideroflexin 5	protein-coding
54021	chr12	75493271	75493780	+	0	NA	3' UTR (NM_007043, exon 10 of 10)	3' UTR (NM_007043, exon 10 of 10)	12770	NM_006851	11010		NM_006851	ENSG00000139278	GLIPR1	CRISP7|GLIPR|RTVP1	GLI pathogenesis related 1	protein-coding
17797	chr1	159802221	159802950	+	0	NA	intron (NM_001284217, intron 2 of 10)	intron (NM_001284217, intron 2 of 10)	225	NM_001004310	343413		NM_001004310	ENSG00000181036	FCRL6	FcRH6	Fc receptor like 6	protein-coding
88230	chr16	82010921	82011680	+	0	NA	intron (NM_145168, intron 1 of 2)	CpG	170	NM_145168	93517		NM_145168	ENSG00000184860	SDR42E1	HSPC105	short chain dehydrogenase/reductase family 42E, member 1	protein-coding
84461	chr16	30447201	30447600	+	0	NA	Intergenic	AluSg|SINE|Alu	-1526	NM_012248	22928		NM_012248	ENSG00000179918	SEPHS2	SPS2	selenophosphate synthetase 2	protein-coding
177878	chr4	128803271	128804140	+	0	NA	Intergenic	L2b|LINE|L2	-5995	NM_199320	79960		NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
43647	chr11	85650951	85651250	+	0	NA	intron (NM_032273, intron 2 of 4)	intron (NM_032273, intron 2 of 4)	3133	NM_032273	84233		NM_032273	ENSG00000171202	TMEM126A	OPA7	transmembrane protein 126A	protein-coding
58413	chr12	131915651	131915900	+	0	NA	intron (NM_003565, intron 18 of 27)	AluSx3|SINE|Alu	-13501	NM_001002019	80324		NM_025215	ENSG00000177192	PUS1	MLASA1	pseudouridine synthase 1	protein-coding
130284	chr2	84888221	84889500	+	0	NA	Intergenic	L2b|LINE|L2	-7776	NM_001307978	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
77099	chr15	78925121	78925630	+	0	NA	exon (NM_004390, exon 10 of 12)	exon (NM_004390, exon 10 of 12)	19671	NM_004390	1512		NM_004390	ENSG00000103811	CTSH	ACC-4|ACC-5|ACC4|ACC5|CPSB	cathepsin H	protein-coding
26910	chr10	26455451	26456550	+	0	NA	intron (NM_019043, intron 2 of 14)	L1MB8|LINE|L1	17659	NM_019043	54518		NM_019043	ENSG00000077420	APBB1IP	INAG1|PREL1|RARP1|RIAM	amyloid beta precursor protein binding family B member 1 interacting protein	protein-coding
23202	chr1	227540471	227541150	+	0	NA	Intergenic	Intergenic	-22746	NM_001367909	339500		NM_032755	ENSG00000181450	ZNF678	-	zinc finger protein 678	protein-coding
109118	chr18	80108401	80110650	+	0	NA	intron (NM_014913, intron 1 of 3)	CpG	263	NM_014913	22850		NM_014913	ENSG00000101544	ADNP2	ZNF508	ADNP homeobox 2	protein-coding
150433	chr21	42423101	42423750	+	0	NA	intron (NM_001243467, intron 6 of 11)	intron (NM_001243467, intron 6 of 11)	19523	NM_001243467	53347		NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding
149383	chr21	31086401	31086780	+	0	NA	Intergenic	Intergenic	-48114	NM_001099219	728299		NM_001099219	ENSG00000206102	KRTAP19-8	-	keratin associated protein 19-8	protein-coding
6715	chr1	29256471	29256650	+	0	NA	intron (NM_133177, intron 2 of 30)	intron (NM_133177, intron 2 of 30)	20038	NM_133177	10076		NM_005704	ENSG00000060656	PTPRU	FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J	protein tyrosine phosphatase receptor type U	protein-coding
212809	chr7	130394151	130394850	+	0	NA	non-coding (NR_046443, exon 11 of 11)	non-coding (NR_046443, exon 11 of 11)	14006	NM_001868	1357		NM_001868	ENSG00000091704	CPA1	CPA	carboxypeptidase A1	protein-coding
223786	chr8	144683371	144683530	+	0	NA	intron (NM_001308208, intron 1 of 10)	AluSz|SINE|Alu	2396	NM_001308208	80728		NM_025251	ENSG00000147799	ARHGAP39	CrGAP|Vilse	Rho GTPase activating protein 39	protein-coding
61637	chr13	73849221	73849680	+	0	NA	intron (NM_007249, intron 3 of 7)	intron (NM_007249, intron 3 of 7)	284479	NM_007249	11278		NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	KLF transcription factor 12	protein-coding
225075	chr9	33288151	33288650	+	0	NA	Intergenic	Intergenic	-2116	NM_002504	4799		NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding
18705	chr1	167442071	167443100	+	0	NA	intron (NM_198053, intron 1 of 7)	intron (NM_198053, intron 1 of 7)	75944	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
237185	chrX	107715301	107715800	+	0	NA	intron (NM_198057, intron 2 of 2)	intron (NM_198057, intron 2 of 2)	958	NM_001015881	1831		NM_004089	ENSG00000157514	TSC22D3	DIP|DSIPI|GILZ|TSC-22R	TSC22 domain family member 3	protein-coding
224473	chr9	16030651	16030750	+	0	NA	Intergenic	Intergenic	245613	NM_001364979	100129385		NM_001271829	ENSG00000205549	LINC03041	C9orf92|Em:AL513424.1	long intergenic non-protein coding RNA 3041	ncRNA
66810	chr14	64733771	64734500	+	0	NA	intron (NM_001308147, intron 12 of 16)	intron (NM_001308147, intron 12 of 16)	29711	NM_001308147	26030		NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding
688	chr1	1388601	1389200	+	0	NA	intron (NR_146723, intron 9 of 13)	AluSp|SINE|Alu	9442	NM_001350497	81669		NM_030937	ENSG00000221978	CCNL2	ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138	cyclin L2	protein-coding
12930	chr1	110668201	110669180	+	0	NA	intron (NR_109845, intron 1 of 2)	intron (NR_109845, intron 1 of 2)	3085	NR_109846	3738		NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding
45323	chr11	118199621	118199880	+	0	NA	intron (NR_104479, intron 6 of 8)	AluY|SINE|Alu	13196	NM_001286571	120425		NM_153206	ENSG00000160593	JAML	AMICA|AMICA1|CREA7-1|CREA7-4|Gm638	junction adhesion molecule like	protein-coding
215407	chr7	157575871	157576030	+	0	NA	intron (NM_130842, intron 18 of 21)	intron (NM_130842, intron 18 of 21)	-1528	NR_029689	406945		NR_029689	ENSG00000207960	MIR153-2	MIRN153-2|mir-153-2	microRNA 153-2	ncRNA
48306	chr12	8995301	8995830	+	0	NA	intron (NM_005810, intron 3 of 4)	intron (NM_005810, intron 3 of 4)	5940	NR_137428	10219		NM_005810	ENSG00000139187	KLRG1	2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE	killer cell lectin like receptor G1	protein-coding
142893	chr20	17959101	17960150	+	0	NA	intron (NM_001282454, intron 1 of 12)	intron (NM_001282454, intron 1 of 12)	3321	NR_003045	692086		NR_003045	ENSG00000212232	SNORD17	HBI-43	small nucleolar RNA, C/D box 17	snoRNA
113935	chr19	10732871	10733030	+	0	NA	intron (NM_001005362, intron 1 of 19)	AluSq10|SINE|Alu	14546	NR_030368	693223		NR_030368	ENSG00000207972	MIR638	MIRN638|hsa-mir-638	microRNA 638	ncRNA
134515	chr2	143431301	143431700	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	302081	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
53549	chr12	67482871	67484450	+	0	NA	Intergenic	Intergenic	-36422	NR_103861	100507175		NR_103861	ENSG00000203585	LINC02408	-	long intergenic non-protein coding RNA 2408	ncRNA
81097	chr16	4358851	4359800	+	0	NA	exon (NM_001201472, exon 23 of 28).2	exon (NM_001201472, exon 23 of 28).2	-8004	NM_016069	51025		NM_016069	ENSG00000217930	PAM16	CGI-136|MAGMAS|SMDMDM|TIM16|TIMM16	presequence translocase associated motor 16	protein-coding
45475	chr11	118578071	118578230	+	0	NA	intron (NM_001142281, intron 1 of 8)	AluSz6|SINE|Alu	5741	NM_001655	372		NM_001655	ENSG00000095139	ARCN1	COPD|SRMMD|SSMG	archain 1	protein-coding
99025	chr17	48850951	48851250	+	0	NA	exon (NM_001261390, exon 7 of 14)	exon (NM_001261390, exon 7 of 14)	20065	NM_001261395	10241		NM_005831	ENSG00000136436	CALCOCO2	NDP52	calcium binding and coiled-coil domain 2	protein-coding
173633	chr4	13483401	13485280	+	0	NA	promoter-TSS (NM_001159601)	promoter-TSS (NM_001159601)	0	NM_001017979	9364		NM_004249	ENSG00000157869	RAB28	CORD18	RAB28, member RAS oncogene family	protein-coding
117363	chr19	19556851	19557350	+	0	NA	Intergenic	Intergenic	18835	NM_153221	148113		NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding
2960	chr1	11915351	11916250	+	0	NA	Intergenic	Intergenic	7646	NR_002754	26829		NR_002754	ENSG00000199347	RNU5E-1	RNU5E|U5E	RNA, U5E small nuclear 1	snRNA
140118	chr2	231521351	231522930	+	0	NA	Intergenic	AluJb|SINE|Alu	-7801	NR_024079	151477		NM_173513	ENSG00000181798	LINC00471	C2orf52	long intergenic non-protein coding RNA 471	ncRNA
77127	chr15	79309421	79309880	+	0	NA	Intergenic	AluSc|SINE|Alu	-1412	NR_125394	23423		NM_007364	ENSG00000166557	TMED3	C15orf22|P24B|p24g4|p24gamma4|p26	transmembrane p24 trafficking protein 3	protein-coding
100383	chr17	60139071	60139230	+	0	NA	Intergenic	Intergenic	-10823	NR_137422	762		NM_000717	ENSG00000167434	CA4	CAIV|Car4|RP17	carbonic anhydrase 4	protein-coding
10712	chr1	75725951	75726430	+	0	NA	intron (NM_001286044, intron 1 of 8)	AluSz6|SINE|Alu	1481	NM_000016	34		NM_000016	ENSG00000117054	ACADM	ACAD1|MCAD|MCADH	acyl-CoA dehydrogenase medium chain	protein-coding
183758	chr5	81718121	81718580	+	0	NA	intron (NM_001256733, intron 1 of 15)	intron (NM_001256733, intron 1 of 15)	32903	NM_001256734	23635		NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding
93206	chr17	17821701	17821980	+	0	NA	intron (NM_004176, intron 1 of 18)	intron (NM_004176, intron 1 of 18)	1790	NM_001321096	6720		NM_004176	ENSG00000072310	SREBF1	HMD|IFAP2|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding
184238	chr5	96655171	96655900	+	0	NA	Intergenic	L3b|LINE|CR1	-6502	NM_001190442	831		NM_001750	ENSG00000153113	CAST	BS-17|MIR583HG|PLACK	calpastatin	protein-coding
33976	chr10	124656551	124656980	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-47263	NR_120631	101927944		NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
73109	chr15	41117951	41118300	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1845	NM_017553	54617		NM_017553	ENSG00000128908	INO80	INO80A|INOC1	INO80 complex ATPase subunit	protein-coding
104814	chr17	81805451	81806300	+	0	NA	intron (NM_000160, intron 1 of 13)	intron (NM_000160, intron 1 of 13)	1725	NM_000160	2642		NM_000160	ENSG00000215644	GCGR	GGR|GL-R|MVAH	glucagon receptor	protein-coding
154068	chr22	30694021	30695530	+	0	NA	promoter-TSS (NM_001282739)	promoter-TSS (NM_001282739)	-99	NM_030758	23762		NM_030758	ENSG00000184792	OSBP2	HLM|ORP-4|ORP4|OSBPL1|OSBPL4	oxysterol binding protein 2	protein-coding
102085	chr17	74963671	74964280	+	0	NA	intron (NM_030630, intron 2 of 18)	intron (NM_030630, intron 2 of 18)	-6714	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA
173734	chr4	16001351	16001930	+	0	NA	intron (NM_001371408, intron 12 of 24)	L2|LINE|L2	-38465	NM_031950	83888		NM_031950	ENSG00000137441	FGFBP2	HBP17RP|KSP37	fibroblast growth factor binding protein 2	protein-coding
230314	chr9	127962401	127962680	+	0	NA	intron (NM_001035254, intron 1 of 10)	intron (NM_001035254, intron 1 of 10)	-11826	NM_203305	399665		NM_203305	ENSG00000167106	EEIG1	C9orf132|FAM102A|SYM-3A|bA203J24.7	estrogen-induced osteoclastogenesis regulator 1	protein-coding
182190	chr5	56814521	56816200	+	0	NA	promoter-TSS (NM_005921)	promoter-TSS (NM_005921)	-189	NM_005921	4214		NM_005921	ENSG00000095015	MAP3K1	MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6	mitogen-activated protein kinase kinase kinase 1	protein-coding
7057	chr1	31979171	31979530	+	0	NA	Intergenic	Intergenic	-34518	NM_006559	10657		NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding
126170	chr2	26397851	26398150	+	0	NA	Intergenic	Intergenic	-3920	NM_145038	92749		NM_145038	ENSG00000157856	DRC1	C2orf39|CCDC164|CILD21|SPGF80	dynein regulatory complex subunit 1	protein-coding
196277	chr6	42975001	42975200	+	0	NA	intron (NM_001316313, intron 1 of 16)	intron (NM_001316313, intron 1 of 16)	4081	NM_001316313	5190		NM_000287	ENSG00000124587	PEX6	HMLR2|PAF-2|PAF2|PBD4A|PDB4B|PXAAA1	peroxisomal biogenesis factor 6	protein-coding
62120	chr13	95617651	95617750	+	0	NA	intron (NM_014934, intron 10 of 21)	intron (NM_014934, intron 10 of 21)	27006	NM_198968	22873		NM_014934	ENSG00000134874	DZIP1	DZIP|DZIPt1|MMVP3|MVP3|SPGF47	DAZ interacting zinc finger protein 1	protein-coding
234883	chrX	30601901	30602300	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-24334	NM_025159	80231		NM_025159	ENSG00000120280	TASL	CXorf21	TLR adaptor interacting with endolysosomal SLC15A4	protein-coding
226676	chr9	75082921	75083700	+	0	NA	intron (NM_001127603, intron 1 of 7)	intron (NM_001127603, intron 1 of 7)	4845	NM_001127603	54981		NM_017881	ENSG00000106733	NMRK1	C9orf95|NRK1|bA235O14.2	nicotinamide riboside kinase 1	protein-coding
174254	chr4	38002871	38003600	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	42837	NM_006607	10744		NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding
193219	chr6	29831301	29831650	+	0	NA	TTS (NM_001384280)	TTS (NM_001384280)	3650	NM_001384290	3135		NM_002127	ENSG00000204632	HLA-G	MHC-G	major histocompatibility complex, class I, G	protein-coding
195740	chr6	39347821	39348100	+	0	NA	intron (NM_001351566, intron 6 of 9)	intron (NM_001351566, intron 6 of 9)	-24992	NM_001363784	83795		NM_032115	ENSG00000095981	KCNK16	K2p16.1|TALK-1|TALK1	potassium two pore domain channel subfamily K member 16	protein-coding
87014	chr16	68257271	68257930	+	0	NA	intron (NM_001363551, intron 5 of 5)	intron (NM_001363551, intron 5 of 5)	-6926	NM_003983	9057		NM_003983	ENSG00000103064	SLC7A6	LAT-2|LAT3|y+LAT-2	solute carrier family 7 member 6	protein-coding
93866	chr17	21028901	21029350	+	0	NA	intron (NM_015276, intron 1 of 12)	intron (NM_015276, intron 1 of 12)	13886	NM_015276	23326		NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding
94616	chr17	29824721	29824980	+	0	NA	intron (NM_033389, intron 1 of 14)	MLT1K|LTR|ERVL-MaLR	-63418	NM_001282131	85464		NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding
65882	chr14	55125501	55126000	+	0	NA	Intergenic	Intergenic	-3502	NM_001357678	3958		NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding
101488	chr17	67579821	67579950	+	0	NA	intron (NM_181671, intron 5 of 9)	AluSx|SINE|Alu	-108300	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
162930	chr3	49448771	49449430	+	0	NA	Intergenic	L2b|LINE|L2	-19603	NM_001177643	1605		NM_004393	ENSG00000173402	DAG1	156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9	dystroglycan 1	protein-coding
108685	chr18	77004621	77005130	+	0	NA	intron (NM_001025090, intron 1 of 5)	intron (NM_001025090, intron 1 of 5)	12180	NM_001025090	4155		NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding
52252	chr12	54417231	54417650	+	0	NA	intron (NM_002205, intron 1 of 29)	intron (NM_002205, intron 1 of 29)	1826	NM_002205	3678		NM_002205	ENSG00000161638	ITGA5	CD49e|FNRA|VLA-5|VLA5A	integrin subunit alpha 5	protein-coding
3508	chr1	16046901	16047380	+	0	NA	intron (NM_000085, intron 4 of 19)	MIR1_Amn|SINE|MIR	-1622	NM_001165945	1188		NM_000085	ENSG00000184908	CLCNKB	CLCKB|ClC-K2|ClC-Kb	chloride voltage-gated channel Kb	protein-coding
235404	chrX	45515271	45515500	+	0	NA	intron (NR_104644, intron 2 of 3)	intron (NR_104644, intron 2 of 3)	9997	NR_104645	101927528		NR_104644	ENSG00000229563	LINC01204	-	long intergenic non-protein coding RNA 1204	ncRNA
183570	chr5	80150651	80151300	+	0	NA	intron (NM_001174072, intron 8 of 11)	intron (NM_001174072, intron 8 of 11)	-67310	NR_109930	101929215		NR_109930	ENSG00000249825	THBS4-AS1	CTD-2201I18.1	THBS4 antisense RNA 1	ncRNA
10172	chr1	61084571	61084730	+	0	NA	intron (NM_001145512, intron 2 of 11)	intron (NM_001145512, intron 2 of 11)	2089	NM_001134673	4774		NM_005595	ENSG00000162599	NFIA	BRMUTD|C1DELp32p31|CTF|DEL1P32P31|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding
174960	chr4	49161371	49161530	+	0	NA	Intergenic	CpG	174808	NM_001286791	80157		NM_025087	ENSG00000109182	CWH43	CWH43-C|PGAP2IP	cell wall biogenesis 43 C-terminal homolog	protein-coding
52434	chr12	55831651	55831750	+	0	NA	intron (NR_036479, intron 3 of 4)	intron (NR_036479, intron 3 of 4)	-2064	NM_032364	85406		NM_032364	ENSG00000135392	DNAJC14	DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding
45572	chr11	118858321	118858580	+	0	NA	Intergenic	AluY|SINE|Alu	-25442	NM_001716	643		NM_001716	ENSG00000160683	CXCR5	BLR1|CD185|MDR15	C-X-C motif chemokine receptor 5	protein-coding
66940	chr14	65517521	65517800	+	0	NA	intron (NM_004480, intron 2 of 9)	intron (NM_004480, intron 2 of 9)	46558	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
9892	chr1	54360501	54360900	+	0	NA	intron (NM_145716, intron 4 of 17)	MIRc|SINE|MIR	45694	NM_145716	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
189784	chr5	176700451	176700550	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-42705	NR_108030	102577424		NR_108030	ENSG00000248859	LINC01574	HI-LNC12	long intergenic non-protein coding RNA 1574	ncRNA
179541	chr4	185005021	185005900	+	0	NA	Intergenic	CpG	-13381	NM_001300782	391723		NM_001029887	ENSG00000187821	HELT	HCM1228|HESL|Mgn|bHLHb44	helt bHLH transcription factor	protein-coding
86167	chr16	57797671	57798480	+	0	NA	promoter-TSS (NM_001318715)	promoter-TSS (NM_001318715)	-51	NM_001318715	3801		NM_005550	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding
118852	chr19	38640801	38641000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-6749	NM_001322033	81		NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding
127548	chr2	42341321	42341600	+	0	NA	intron (NM_001319038, intron 2 of 2)	intron (NM_001319038, intron 2 of 2)	18578	NR_134948	9167		NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SCAF1|SCAFI|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding
102804	chr17	76401051	76401350	+	0	NA	intron (NM_022066, intron 5 of 17)	intron (NM_022066, intron 5 of 17)	15922	NM_001142602	8877		NM_021972	ENSG00000176170	SPHK1	SPHK	sphingosine kinase 1	protein-coding
5058	chr1	24634951	24635580	+	0	NA	Intergenic	Intergenic	-8037	NM_001366568	10250		NM_005839	ENSG00000133226	SRRM1	160-KD|POP101|SRM160	serine and arginine repetitive matrix 1	protein-coding
165649	chr3	101825951	101826530	+	0	NA	non-coding (NR_145993, exon 7 of 7)	non-coding (NR_145993, exon 7 of 7)	-1750	NM_001005474	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
108418	chr18	69944371	69944800	+	0	NA	intron (NM_001303619, intron 1 of 4)	intron (NM_001303619, intron 1 of 4)	3288	NM_001303618	10666		NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding
101615	chr17	68197101	68197690	+	0	NA	Intergenic	CpG	-1265	NR_027283	440461		NR_027283		ARHGAP27P2	-	Rho GTPase activating protein 27 pseudogene 2	pseudo
231785	chr9	132304921	132305380	+	0	NA	intron (NM_001351527, intron 11 of 25)	AluY|SINE|Alu	49706	NM_001351527	23064		NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAN2|SCAR1|STEX|Sen1|bA479K20.2	senataxin	protein-coding
186769	chr5	139335871	139336800	+	0	NA	Intergenic	AluSx3|SINE|Alu	-5497	NR_109830	51247		NM_016480	ENSG00000120727	PAIP2	PAIP-2|PAIP2A	poly(A) binding protein interacting protein 2	protein-coding
24612	chr1	246509871	246510030	+	0	NA	Intergenic	Intergenic	-2671	NM_001167740	64754		NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
23862	chr1	234780101	234781230	+	0	NA	Intergenic	Intergenic	-20609	NR_148962	100130249		NR_148962	ENSG00000279261	LINC02961	PP2672	long intergenic non-protein coding RNA 2961	ncRNA
134386	chr2	136348221	136348780	+	0	NA	Intergenic	Intergenic	-230351	NM_001348056	7852		NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS|WHIMS1	C-X-C motif chemokine receptor 4	protein-coding
158977	chr3	10257551	10258250	+	0	NA	intron (NM_014760, intron 2 of 7)	AluY|SINE|Alu	9441	NM_014760	9797		NM_014760	ENSG00000157014	TATDN2	-	TatD DNase domain containing 2	protein-coding
151338	chr21	45632001	45632400	+	0	NA	Intergenic	Intergenic	-11525	NM_001382287	54039		NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3|PCBP3-OT1|PCBP3OT	poly(rC) binding protein 3	protein-coding
210317	chr7	99477471	99477830	+	0	NA	intron (NR_147002, intron 2 of 3)	intron (NR_147002, intron 2 of 3)	4758	NM_001351000	285989		NM_213603	ENSG00000198556	ZNF789	-	zinc finger protein 789	protein-coding
233153	chr9	137170921	137171730	+	0	NA	intron (NM_001282477, intron 3 of 3)	intron (NM_001282477, intron 3 of 3)	731	NM_001282477	100505993		NM_001282477	ENSG00000185863	TMEM210	-	transmembrane protein 210	protein-coding
11222	chr1	88875521	88875780	+	0	NA	intron (NM_001514, intron 2 of 6)	intron (NM_001514, intron 2 of 6)	15917	NM_001514	2959		NM_001514	ENSG00000137947	GTF2B	TF2B|TFIIB	general transcription factor IIB	protein-coding
132505	chr2	106077001	106077300	+	0	NA	intron (NM_032411, intron 3 of 3)	L2b|LINE|L2	11462	NM_032411	84417		NM_032411	ENSG00000119147	ECRG4	C2orf40	ECRG4 augurin precursor	protein-coding
175224	chr4	56910771	56911230	+	0	NA	exon (NM_001363453, exon 2 of 4)	exon (NM_001363453, exon 2 of 4)	2087	NM_001193508	5978		NM_005612	ENSG00000084093	REST	DFNA27|GINGF5|HGF5|NRSF|WT6|XBR	RE1 silencing transcription factor	protein-coding
214819	chr7	151235021	151235650	+	0	NA	exon (NM_019015, exon 2 of 4)	exon (NM_019015, exon 2 of 4)	2846	NM_019015	54480		NM_019015	ENSG00000033100	CHPF2	CSGLCA-T|CSGlcAT|ChSy-3|chPF-2	chondroitin polymerizing factor 2	protein-coding
217866	chr8	37839221	37839480	+	0	NA	intron (NM_032777, intron 15 of 18)	intron (NM_032777, intron 15 of 18)	10511	NM_018310	55290		NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2 RNA polymerase III transcription initiation factor subunit	protein-coding
194532	chr6	33308321	33308650	+	0	NA	intron (NM_172209, intron 2 of 6).2	intron (NM_172209, intron 2 of 6).2	5593	NM_003190	6892		NM_003190	ENSG00000231925	TAPBP	NGS17|TAPA|TPN|TPSN	TAP binding protein	protein-coding
35669	chr11	1872301	1873180	+	0	NA	intron (NM_001013254, intron 1 of 10)	intron (NM_001013254, intron 1 of 10)	1816	NM_001013255	4046		NM_002339	ENSG00000130592	LSP1	WP34|pp52	lymphocyte specific protein 1	protein-coding
189683	chr5	176405701	176406100	+	0	NA	3' UTR (NM_001364127, exon 3 of 3)	3' UTR (NM_001364127, exon 3 of 3)	4923	NM_001364126	1212		NM_001834	ENSG00000175416	CLTB	LCB	clathrin light chain B	protein-coding
31661	chr10	97418151	97419350	+	0	NA	TTS (NR_157582)	TTS (NR_157582)	7307	NR_157582	644215		NR_157582		LOC644215	-	uncharacterized LOC644215	ncRNA
200886	chr6	138977101	138977300	+	0	NA	intron (NM_031922, intron 1 of 19)	L1ME1|LINE|L1	11053	NM_001286611	85021		NM_031922	ENSG00000135597	REPS1	NBIA7|RALBP1	RALBP1 associated Eps domain containing 1	protein-coding
238715	chrX	154125271	154125630	+	0	NA	Intergenic	L1M1|LINE|L1	-18793	NM_020061	5956		NM_020061	ENSG00000102076	OPN1LW	CBBM|CBP|COD5|RCP|ROP	opsin 1, long wave sensitive	protein-coding
51636	chr12	53003521	53004200	+	0	NA	Intergenic	AluYm1|SINE|Alu	-2596	NM_001300821	1975		NM_001417	ENSG00000063046	EIF4B	EIF-4B|PRO1843	eukaryotic translation initiation factor 4B	protein-coding
187414	chr5	141961621	141961980	+	0	NA	Intergenic	Intergenic	-3598	NM_016580	51294		NM_016580	ENSG00000113555	PCDH12	DMJDS1|VE-cadherin-2|VECAD2	protocadherin 12	protein-coding
192378	chr6	24713751	24714130	+	0	NA	intron (NM_030939, intron 3 of 4)	intron (NM_030939, intron 3 of 4)	5214	NM_030939	81688		NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
172782	chr4	2940401	2941180	+	0	NA	intron (NM_001291978, intron 15 of 17)	intron (NM_001291978, intron 15 of 17)	5244	NR_015453	317648		NR_015453		NOP14-AS1	C4orf10|RES4-24	NOP14 antisense RNA 1	ncRNA
87837	chr16	75646901	75648200	+	0	NA	promoter-TSS (NR_144545)	promoter-TSS (NR_144545)	115	NM_001130089	3735		NM_005548	ENSG00000065427	KARS1	CMTRIB|DEAPLE|DFNB89|KARS|KARS2|KRS|LEPID	lysyl-tRNA synthetase 1	protein-coding
168553	chr3	146551101	146551530	+	0	NA	Intergenic	Intergenic	-6708	NM_021105	5359		NM_021105	ENSG00000188313	PLSCR1	MMTRA1B	phospholipid scramblase 1	protein-coding
722	chr1	1436671	1437030	+	0	NA	intron (NM_199121, intron 1 of 2)	intron (NM_199121, intron 1 of 2)	1160	NM_022834	64856		NM_022834	ENSG00000179403	VWA1	HMNMYO|HMNR7|WARP	von Willebrand factor A domain containing 1	protein-coding
88431	chr16	84752801	84753000	+	0	NA	intron (NR_073578, intron 3 of 10)	intron (NR_073578, intron 3 of 10)	52900	NM_005153	9100		NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding
84260	chr16	30029851	30030150	+	0	NA	promoter-TSS (NM_001318504)	promoter-TSS (NM_001318504)	84	NM_001318504	83723		NM_031478	ENSG00000149926	TLCD3B	CORD22|FAM57B|FP1188	TLC domain containing 3B	protein-coding
219400	chr8	70603251	70603550	+	0	NA	intron (NM_001317804, intron 2 of 11)	intron (NM_001317804, intron 2 of 11)	4269	NM_001317805	23471		NM_014294	ENSG00000067167	TRAM1	PNAS8|TRAM|TRAMP	translocation associated membrane protein 1	protein-coding
156680	chr22	41661751	41662050	+	0	NA	intron (NM_001288976, intron 12 of 12)	L1MA2|LINE|L1	26967	NM_005008	4809		NM_005008	ENSG00000100138	SNU13	15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1	small nuclear ribonucleoprotein 13	protein-coding
89698	chr16	89396901	89397550	+	0	NA	intron (NR_045839, intron 2 of 9)	intron (NR_045839, intron 2 of 9)	-33693	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
40067	chr11	62756451	62756750	+	0	NA	Intergenic	AluSx|SINE|Alu	-2440	NM_001363109	79842		NM_024784	ENSG00000185670	ZBTB3	-	zinc finger and BTB domain containing 3	protein-coding
56499	chr12	116275071	116275300	+	0	NA	intron (NM_015335, intron 1 of 30)	intron (NM_015335, intron 1 of 30)	2508	NM_015335	23389		NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13L	protein-coding
192651	chr6	26172601	26174050	+	0	NA	Intergenic	Intergenic	-10436	NM_003523	8344		NM_003523	ENSG00000274290	H2BC6	H2B.h|H2B/h|H2BC10|H2BC4|H2BC7|H2BC8|H2BFH|HIST1H2BE|dJ221C16.8	H2B clustered histone 6	protein-coding
35003	chr11	532701	532900	+	0	NA	intron (NM_001130442, intron 4 of 4).2	intron (NM_001130442, intron 4 of 4).2	2767	NM_176795	3265		NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding
131111	chr2	90288471	90289100	+	0	NA	Intergenic	(CCAAGCCAG)n|Simple_repeat|Simple_repeat	-650878	NR_136329	101927050		NR_136329		KMT2CP4	-	lysine methyltransferase 2C pseudogene 4	pseudo
75138	chr15	64594351	64594650	+	0	NA	intron (NM_015042, intron 2 of 9)	AluJb|SINE|Alu	108781	NM_001301302	4947		NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding
130509	chr2	85599251	85599350	+	0	NA	exon (NM_001031738, exon 8 of 8)	exon (NM_001031738, exon 8 of 8)	3094	NM_001369917	129303		NM_153342	ENSG00000168890	TMEM150A	TM6P1|TMEM150|TTN1	transmembrane protein 150A	protein-coding
200507	chr6	135625901	135626300	+	0	NA	intron (NR_152845, intron 2 of 4)	LTR12|LTR|ERV1	128299	NR_026805	100131814		NR_026805	ENSG00000231028	AHI1-DT	C6orf217|LINC00271|NCRNA00271	AHI1 divergent transcript	ncRNA
38026	chr11	35138671	35140370	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	349	NM_001001391	960		NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECM-III|ECMR-III|H-CAM|HCELL|HUTCH-1|HUTCH-I|Hermes-1|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (IN blood group)	protein-coding
84295	chr16	30084871	30085150	+	0	NA	TTS (NM_004608)	TTS (NM_004608)	6914	NM_004608	6911		NM_004608	ENSG00000149922	TBX6	SCDO5	T-box transcription factor 6	protein-coding
207064	chr7	39808951	39809050	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	75432	NR_026999	349114		NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA
95986	chr17	39174651	39175630	+	0	NA	3' UTR (NM_000723, exon 14 of 14)	3' UTR (NM_000723, exon 14 of 14)	-8979	NM_001143968	390790		NM_001143968	ENSG00000141748	ARL5C	ARL12	ADP ribosylation factor like GTPase 5C	protein-coding
127989	chr2	46938621	46939080	+	0	NA	intron (NM_001288953, intron 2 of 20)	AluSx3|SINE|Alu	-2374	NM_001288955	57217		NM_020458	ENSG00000068724	TTC7A	GIDID|MINAT|TTC7	tetratricopeptide repeat domain 7A	protein-coding
223422	chr8	143947771	143947930	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	-2571	NR_030383	724031		NR_030383	ENSG00000207574	MIR661	MIRN661|hsa-mir-661	microRNA 661	ncRNA
217898	chr8	37887651	37887950	+	0	NA	intron (NM_025151, intron 1 of 4)	intron (NM_025151, intron 1 of 4)	11697	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
186835	chr5	139422221	139422950	+	0	NA	intron (NM_152686, intron 6 of 7)	intron (NM_152686, intron 6 of 7)	16940	NM_152686	202052		NM_152686	ENSG00000170464	DNAJC18	-	DnaJ heat shock protein family (Hsp40) member C18	protein-coding
156569	chr22	41466551	41467080	+	0	NA	intron (NM_032758, intron 3 of 3)	AluJo|SINE|Alu	1877	NM_032758	84844		NM_032758	ENSG00000100410	PHF5A	INI|Rds3|SAP14b|SF3B7|SF3b14b|bK223H9.2	PHD finger protein 5A	protein-coding
33551	chr10	119303301	119303550	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	-74547	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA
25791	chr10	11172951	11173500	+	0	NA	intron (NM_001326346, intron 2 of 11)	intron (NM_001326346, intron 2 of 11)	8195	NM_001025076	10659		NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|DEE97|ETR-3|ETR3|NAPOR	CUGBP Elav-like family member 2	protein-coding
210084	chr7	97005071	97005480	+	0	NA	promoter-TSS (NM_005222)	promoter-TSS (NM_005222)	-278	NM_005222	1750		NM_005222	ENSG00000006377	DLX6	-	distal-less homeobox 6	protein-coding
21799	chr1	207069971	207070330	+	0	NA	intron (NM_001018053, intron 11 of 14)	intron (NM_001018053, intron 11 of 14)	16875	NM_001018053	5208		NM_006212	ENSG00000123836	PFKFB2	PFK-2/FBPase-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding
174648	chr4	40702221	40702680	+	0	NA	Intergenic	Intergenic	-47505	NM_001330648	79730		NM_024677	ENSG00000179299	NSUN7	-	NOP2/Sun RNA methyltransferase family member 7	protein-coding
63962	chr14	22124071	22124380	+	0	NA	Intergenic	Intergenic	308528	NR_148363	105370401		NR_148361	ENSG00000251002	TRD-AS1	-	TRD antisense RNA 1	ncRNA
192901	chr6	27566021	27566280	+	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	-93032	NM_001318891	7738		NM_007149	ENSG00000096654	ZNF184	kr-ZNF3	zinc finger protein 184	protein-coding
138181	chr2	202650451	202650750	+	0	NA	intron (NM_173511, intron 1 of 7)	MLT2A2|LTR|ERVL	15631	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
75831	chr15	69456501	69456850	+	0	NA	TTS (NM_213725)	TTS (NM_213725)	3857	NM_213725	6176		NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
146681	chr20	50520551	50521000	+	0	NA	intron (NM_001278618, intron 1 of 8)	MIRc|SINE|MIR	10392	NM_002827	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
71839	chr15	22218701	22219300	+	0	NA	Intergenic	AluYm1|SINE|Alu	6329	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA
50503	chr12	47810271	47811130	+	0	NA	intron (NR_160436, intron 1 of 25)	MIRc|SINE|MIR	9203	NM_001308090	51564		NM_015401	ENSG00000061273	HDAC7	HD7|HD7A|HDAC7A	histone deacetylase 7	protein-coding
69038	chr14	91839571	91840000	+	0	NA	intron (NM_001128596, intron 1 of 11)	L2a|LINE|L2	-3330	NM_001289134	123036		NM_152332	ENSG00000165929	TC2N	C14orf47|C2CD1|MTAC2D1|TAC2N|Tac2-N	tandem C2 domains, nuclear	protein-coding
183243	chr5	76394651	76394950	+	0	NA	Intergenic	Intergenic	-8485	NM_006633	10788		NM_006633	ENSG00000145703	IQGAP2	-	IQ motif containing GTPase activating protein 2	protein-coding
237269	chrX	110822251	110822350	+	0	NA	Intergenic	L1PA2|LINE|L1	-26483	NM_001367204	91851		NM_145234	ENSG00000101938	CHRDL1	CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1	chordin like 1	protein-coding
26840	chr10	24723501	24724000	+	0	NA	promoter-TSS (NM_001367451)	promoter-TSS (NM_001367451)	137	NM_020824	57584		NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding
107267	chr18	42053051	42053500	+	0	NA	intron (NM_002647, intron 21 of 24)	intron (NM_002647, intron 21 of 24)	98041	NM_001308020	5289		NM_002647	ENSG00000078142	PIK3C3	VPS34|Vps34|hVps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding
11675	chr1	91827051	91827430	+	0	NA	intron (NR_036634, intron 2 of 17)	intron (NR_036634, intron 2 of 17)	58911	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
110287	chr19	1826021	1827750	+	0	NA	exon (NM_020695, exon 2 of 16)	exon (NM_020695, exon 2 of 16)	4796	NR_152847	100288123		NR_034114	ENSG00000267244	LOC100288123	-	uncharacterized LOC100288123	ncRNA
44967	chr11	116851071	116852350	+	0	NA	intron (NM_001281748, intron 21 of 24)	intron (NM_001281748, intron 21 of 24)	-13760	NM_001318021	335		NM_000039	ENSG00000118137	APOA1	HPALP2|apo(a)	apolipoprotein A1	protein-coding
234216	chrX	12976071	12977100	+	0	NA	intron (NM_021109, intron 2 of 2)	intron (NM_021109, intron 2 of 2)	1475	NM_021109	7114		NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4 X-linked	protein-coding
143771	chr20	32410871	32411650	+	0	NA	intron (NM_015338, intron 3 of 11)	AluSx1|SINE|Alu	52195	NM_001363734	171023		NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	ASXL transcriptional regulator 1	protein-coding
48552	chr12	10227671	10227830	+	0	NA	Intergenic	Intergenic	-11211	NM_001351060	3824		NM_002262	ENSG00000134539	KLRD1	CD94	killer cell lectin like receptor D1	protein-coding
11714	chr1	91871421	91871950	+	0	NA	intron (NM_001195684, intron 2 of 17)	L2a|LINE|L2	14466	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
70143	chr14	100282971	100283330	+	0	NA	TTS (NM_003403)	TTS (NM_003403)	5793	NR_106822	102466730		NR_106822	ENSG00000283840	MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
170356	chr3	184568001	184568350	+	0	NA	intron (NM_004443, intron 1 of 15)	intron (NM_004443, intron 1 of 15)	6390	NM_004443	2049		NM_004443	ENSG00000182580	EPHB3	EK2|ETK2|HEK2|TYRO6	EPH receptor B3	protein-coding
77975	chr15	89406171	89406530	+	0	NA	intron (NR_160724, intron 1 of 2)	CpG	6179	NR_160724	105371031		NR_160724		LOC105371031	-	uncharacterized LOC105371031	ncRNA
183327	chr5	76720821	76721530	+	0	NA	intron (NM_001992, intron 1 of 1)	intron (NM_001992, intron 1 of 1)	5049	NM_001311313	2149		NM_001992	ENSG00000181104	F2R	CF2R|HTR|PAR-1|PAR1|TR	coagulation factor II thrombin receptor	protein-coding
159584	chr3	15063351	15063650	+	0	NA	intron (NR_135246, intron 1 of 4)	intron (NR_135246, intron 1 of 4)	1815	NR_135247	64432		NM_022497	ENSG00000131368	MRPS25	COXPD50|MRP-S25|RPMS25|mS25	mitochondrial ribosomal protein S25	protein-coding
48044	chr12	6967201	6967780	+	0	NA	non-coding (NR_003010, exon 1 of 1)	non-coding (NR_003010, exon 1 of 1)	116	NR_003010	677777		NR_003010	ENSG00000238795	SCARNA12	U89	small Cajal body-specific RNA 12	ncRNA
91463	chr17	4831401	4831950	+	0	NA	Intergenic	AluJr|SINE|Alu	-1665	NM_015716	50488		NM_015716	ENSG00000141503	MINK1	B55|MAP4K6|MEKKK 6|MINK|YSK2|ZC3	misshapen like kinase 1	protein-coding
132164	chr2	101765751	101766250	+	0	NA	intron (NM_001384572, intron 1 of 29)	intron (NM_001384572, intron 1 of 29)	67735	NM_001384563	9448		NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
25982	chr10	11844951	11845450	+	0	NA	intron (NM_153256, intron 1 of 3)	L1ME4b|LINE|L1	21844	NM_153256	254427		NM_153256	ENSG00000148426	PROSER2	C10orf47	proline and serine rich 2	protein-coding
227082	chr9	85623421	85623680	+	0	NA	intron (NM_001330701, intron 14 of 25)	AluSx1|SINE|Alu	118404	NM_001330701	23287		NM_015239	ENSG00000135049	AGTPBP1	CCP1|CONDCA|NNA1	ATP/GTP binding carboxypeptidase 1	protein-coding
153770	chr22	29552321	29552730	+	0	NA	intron (NM_001002877, intron 1 of 20)	SVA_C|Retroposon|SVA	1130	NM_001002878	8563		NM_003678	ENSG00000100296	THOC5	C22orf19|Fmip|PK1.3|fSAP79	THO complex subunit 5	protein-coding
235172	chrX	41181221	41181480	+	0	NA	intron (NM_001039590, intron 21 of 44)	AluJr4|SINE|Alu	-94389	NR_135616	105373185		NR_135616	ENSG00000223714	LINC02601	-	long intergenic non-protein coding RNA 2601	ncRNA
3061	chr1	12169971	12170130	+	0	NA	intron (NM_001066, intron 1 of 9)	intron (NM_001066, intron 1 of 9)	3059	NM_001066	7133		NM_001066	ENSG00000028137	TNFRSF1B	CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR	TNF receptor superfamily member 1B	protein-coding
49500	chr12	25323771	25324580	+	0	NA	Intergenic	Intergenic	-73246	NM_001369786	3845		NM_004985	ENSG00000133703	KRAS	'C-K-RAS|C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|K-Ras 2|KI-RAS|KRAS1|KRAS2|NS|NS3|OES|RALD|RASK2|c-Ki-ras|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding
220250	chr8	97602451	97602550	+	0	NA	Intergenic	L1MC5|LINE|L1	-41684	NM_178812	92140		NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding
112006	chr19	4978551	4978850	+	0	NA	intron (NM_001370093, intron 1 of 11)	intron (NM_001370093, intron 1 of 11)	9587	NM_015015	23030		NM_015015	ENSG00000127663	KDM4B	JMJD2B|MRD65|TDRD14B	lysine demethylase 4B	protein-coding
38158	chr11	35715101	35715300	+	0	NA	intron (NM_017583, intron 2 of 4)	intron (NM_017583, intron 2 of 4)	52425	NM_017583	54765		NM_017583	ENSG00000166326	TRIM44	AN3|DIPB|HSA249128|MC7	tripartite motif containing 44	protein-coding
141460	chr2	241057921	241058180	+	0	NA	intron (NM_001080437, intron 16 of 31)	L1ME3F|LINE|L1	44237	NR_138463	130916		NM_182501	ENSG00000122085	MTERF4	MTERFD2	mitochondrial transcription termination factor 4	protein-coding
111710	chr19	4310651	4311180	+	0	NA	intron (NM_024333, intron 6 of 12)	intron (NM_024333, intron 6 of 12)	6317	NM_024333	79187		NM_024333	ENSG00000105255	FSD1	GLFND|MIR1	fibronectin type III and SPRY domain containing 1	protein-coding
151790	chr22	18152451	18153130	+	0	NA	intron (NM_017414, intron 1 of 10)	intron (NM_017414, intron 1 of 10)	2620	NM_017414	11274		NM_017414	ENSG00000184979	USP18	ISG43|PTORCH2|UBP43	ubiquitin specific peptidase 18	protein-coding
215595	chr7	158975451	158975950	+	0	NA	Intergenic	Intergenic	-32654	NR_024394	154822		NM_198345	ENSG00000231419	LINC00689	STORM	long intergenic non-protein coding RNA 689	ncRNA
183821	chr5	83471471	83471980	+	0	NA	promoter-TSS (NM_004385)	promoter-TSS (NM_004385)	-19	NM_001126336	1462		NM_004385	ENSG00000038427	VCAN	CSPG2|ERVR|GHAP|PG-M|WGN|WGN1	versican	protein-coding
228757	chr9	110158171	110158330	+	0	NA	intron (NM_147150, intron 9 of 9)	intron (NM_147150, intron 9 of 9)	32749	NM_001136562	445815		NM_007203	ENSG00000157654	PALM2AKAP2	AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PALM2-AKAP2|PRKA2	PALM2 and AKAP2 fusion	protein-coding
106941	chr18	26649771	26649930	+	0	NA	intron (NM_001258222, intron 1 of 4)	intron (NM_001258222, intron 1 of 4)	7623	NM_001258222	284252		NM_198991	ENSG00000134504	KCTD1	C18orf5	potassium channel tetramerization domain containing 1	protein-coding
64857	chr14	35285351	35286400	+	0	NA	intron (NM_001282234, intron 1 of 6)	intron (NM_001282234, intron 1 of 6)	-6442	NR_104110	5687		NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome 20S subunit alpha 6	protein-coding
96927	chr17	42158071	42158230	+	0	NA	intron (NM_012285, intron 16 of 16)	AluSp|SINE|Alu	-3161	NM_001252039	5878		NM_004583	ENSG00000108774	RAB5C	L1880|RAB5CL|RAB5L|RABL	RAB5C, member RAS oncogene family	protein-coding
80601	chr16	2926701	2927630	+	0	NA	intron (NM_032296, intron 2 of 9)	intron (NM_032296, intron 2 of 9)	15186	NM_020912	84256		NM_020912	ENSG00000059122	FLYWCH1	-	FLYWCH-type zinc finger 1	protein-coding
189298	chr5	172119521	172119780	+	0	NA	intron (NM_005990, intron 3 of 18)	AluY|SINE|Alu	68574	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
232333	chr9	135412521	135412800	+	0	NA	Intergenic	CpG	59589	NR_038969	100506599		NR_038969	ENSG00000225361	PPP1R26-AS1	-	PPP1R26 antisense RNA 1	ncRNA
16741	chr1	155272721	155275130	+	0	NA	promoter-TSS (NM_001294339)	promoter-TSS (NM_001294339)	-421	NM_001294339	1196		NM_001291	ENSG00000176444	CLK2	-	CDC like kinase 2	protein-coding
118780	chr19	38392601	38393400	+	0	NA	intron (NM_001042522, intron 3 of 4)	L2a|LINE|L2	2708	NR_073032	399473		NM_001039616	ENSG00000188766	SPRED3	Eve-3|spred-3	sprouty related EVH1 domain containing 3	protein-coding
38851	chr11	47331551	47333230	+	0	NA	intron (NM_000256, intron 31 of 33)	intron (NM_000256, intron 31 of 33)	20312	NM_000256	4607		NM_000256	ENSG00000134571	MYBPC3	CMD1MM|CMH4|FHC|LVNC10|MYBP-C|cMyBP-C	myosin binding protein C3	protein-coding
166075	chr3	108846351	108846650	+	0	NA	intron (NM_001317747, intron 2 of 4)	MIRb|SINE|MIR	23714	NM_016388	50852		NM_016388	ENSG00000163519	TRAT1	HSPC062|TCRIM|TRIM|pp29/30	T cell receptor associated transmembrane adaptor 1	protein-coding
179325	chr4	182144521	182144800	+	0	NA	promoter-TSS (NR_027107)	promoter-TSS (NR_027107)	-145	NR_027107	90768		NR_027107		TENM3-AS1	-	TENM3 antisense RNA 1	ncRNA
185181	chr5	119361551	119362300	+	0	NA	intron (NM_014350, intron 1 of 1)	intron (NM_014350, intron 1 of 1)	5906	NM_014350	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
121002	chr19	45774051	45774350	+	0	NA	intron (NM_001081560, intron 9 of 14)	AluSp|SINE|Alu	-4948	NM_175875	147912		NM_175875	ENSG00000177045	SIX5	BOR2|DMAHP	SIX homeobox 5	protein-coding
104763	chr17	81698021	81698880	+	0	NA	intron (NM_004712, intron 18 of 21)	L1MC4a|LINE|L1	4693	NR_106844	102465471		NR_106844	ENSG00000277784	MIR6786	hsa-mir-6786	microRNA 6786	ncRNA
39462	chr11	60978351	60980430	+	0	NA	intron (NM_006725, intron 1 of 12)	intron (NM_006725, intron 1 of 12)	7710	NR_045638	923		NM_006725	ENSG00000013725	CD6	TP120	CD6 molecule	protein-coding
141791	chr20	227521	227780	+	0	NA	intron (NM_080831, intron 1 of 1)	intron (NM_080831, intron 1 of 1)	392	NM_080831	140881		NM_080831	ENSG00000125903	DEFB129	C20orf87|DEFB-29|DEFB29|bA530N10.3|hBD-29	defensin beta 129	protein-coding
124682	chr2	3461921	3462650	+	0	NA	intron (NM_016030, intron 8 of 11)	intron (NM_016030, intron 8 of 11)	55462	NM_001306077	55256		NM_018269	ENSG00000182551	ADI1	APL1|ARD|ARD'|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding
8816	chr1	42949051	42949880	+	0	NA	intron (NM_006516, intron 1 of 9)	intron (NM_006516, intron 1 of 9)	9403	NM_006516	6513		NM_006516	ENSG00000117394	SLC2A1	CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN	solute carrier family 2 member 1	protein-coding
151461	chr21	46201171	46201430	+	0	NA	intron (NM_001145437, intron 16 of 20)	intron (NM_001145437, intron 16 of 20)	-7141	NR_145780	109623452		NR_145780		SNORD159	-	small nucleolar RNA, C/D box 159	snoRNA
27374	chr10	30812571	30812730	+	0	NA	Intergenic	Intergenic	89431	NR_134497	105376480		NR_134497	ENSG00000230720	LINC02644	-	long intergenic non-protein coding RNA 2644	ncRNA
230035	chr9	127284051	127284150	+	0	NA	intron (NR_104591, intron 1 of 26)	intron (NR_104591, intron 1 of 26)	19326	NM_032293	84253		NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding
112494	chr19	6456151	6456750	+	0	NA	exon (NM_024103, exon 4 of 10)	exon (NM_024103, exon 4 of 10)	3342	NM_024103	79085		NM_024103	ENSG00000125648	SLC25A23	APC2|MCSC2|SCAMC3|SCaMC-3	solute carrier family 25 member 23	protein-coding
155883	chr22	39517421	39517680	+	0	NA	non-coding (NR_130789, exon 6 of 6)	non-coding (NR_130789, exon 6 of 6)	-3009	NM_001675	468		NM_001675	ENSG00000128272	ATF4	CREB-2|CREB2|TAXREB67|TXREB	activating transcription factor 4	protein-coding
152414	chr22	20568971	20570130	+	0	NA	intron (NM_001293234, intron 8 of 16)	intron (NM_001293234, intron 8 of 16)	61503	NM_001293237	51586		NM_015889	ENSG00000099917	MED15	ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7	mediator complex subunit 15	protein-coding
221659	chr8	125950741	125952580	+	0	NA	promoter-TSS (NR_038447)	promoter-TSS (NR_038447)	-463	NR_038446	100130231		NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA
102210	chr17	75202821	75203300	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2376	NM_001330472	79902		NM_024844	ENSG00000125450	NUP85	FROUNT|NPHS17|Nup75	nucleoporin 85	protein-coding
165676	chr3	101866051	101866630	+	0	NA	Intergenic	Intergenic	16826	NM_031419	64332		NM_031419	ENSG00000144802	NFKBIZ	I-kappa-B-zeta|IKBZ|INAP|IkappaB-zeta|MAIL|ikB-zeta|ikappaBzeta	NFKB inhibitor zeta	protein-coding
42332	chr11	68489451	68489750	+	0	NA	intron (NM_001352362, intron 2 of 24)	Tigger1|DNA|TcMar-Tigger	28848	NM_001352360	55291		NM_018312	ENSG00000110075	PPP6R3	C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3	protein phosphatase 6 regulatory subunit 3	protein-coding
43852	chr11	88103671	88103920	+	0	NA	Intergenic	LTR41C|LTR|ERVL	71648	NM_022337	23682		NM_022337	ENSG00000123892	RAB38	NY-MEL-1|rrGTPbp	RAB38, member RAS oncogene family	protein-coding
158808	chr3	9715051	9715350	+	0	NA	intron (NM_153635, intron 10 of 19)	intron (NM_153635, intron 10 of 19)	11367	NM_153635	151835		NM_153635	ENSG00000144550	CPNE9	-	copine family member 9	protein-coding
32767	chr10	104332921	104334080	+	0	NA	intron (NM_033397, intron 1 of 2)	intron (NM_033397, intron 1 of 2)	405	NM_033397	85450		NM_033397	ENSG00000148841	ITPRIP	D1A|DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding
15890	chr1	151537551	151538300	+	0	NA	3' UTR (NM_020770, exon 21 of 21)	3' UTR (NM_020770, exon 21 of 21)	-2384	NM_001126337	7286		NM_020127	ENSG00000143367	TUFT1	WHSF	tuftelin 1	protein-coding
125527	chr2	12861271	12862000	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	124268	NR_036072	100422986		NR_036072	ENSG00000264370	MIR3125	mir-3125	microRNA 3125	ncRNA
111567	chr19	4056451	4057130	+	0	NA	intron (NM_015898, intron 1 of 2)	AluSc8|SINE|Alu	8739	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
27	chr1	135451	136080	+	0	NA	non-coding (NR_039983, exon 3 of 3)	non-coding (NR_039983, exon 3 of 3)	4801	NR_039983	729737		NR_039983		LOC729737	-	uncharacterized LOC729737	ncRNA
169428	chr3	161312251	161312580	+	0	NA	Intergenic	AluJo|SINE|Alu	59668	NM_001040100	165679		NM_145035	ENSG00000196542	SPTSSB	ADMP|C3orf57|SSSPTB	serine palmitoyltransferase small subunit B	protein-coding
172850	chr4	3288021	3288500	+	0	NA	Intergenic	Intergenic	-25887	NM_198229	6002		NM_002926	ENSG00000159788	RGS12	-	regulator of G protein signaling 12	protein-coding
235068	chrX	40166451	40166780	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	10662	NM_001123384	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
229041	chr9	114329001	114329200	+	0	NA	promoter-TSS (NM_000608)	promoter-TSS (NM_000608)	-769	NM_000608	5005		NM_000608	ENSG00000228278	ORM2	AGP-B|AGP-B'|AGP2	orosomucoid 2	protein-coding
221909	chr8	128774051	128774150	+	0	NA	Intergenic	Intergenic	191901	NR_145483	106144608		NR_145483	ENSG00000229140	LINC00976	-	long intergenic non-protein coding RNA 976	ncRNA
104664	chr17	81487601	81488730	+	0	NA	Intergenic	CpG	24634	NM_001199954	71		NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding
206191	chr7	28177601	28178000	+	0	NA	intron (NM_175061, intron 1 of 4)	intron (NM_175061, intron 1 of 4)	-2657	NR_034097	100128081		NR_034097		JAZF1-AS1	-	JAZF1 antisense RNA 1	ncRNA
7482	chr1	33153051	33153550	+	0	NA	intron (NM_001330483, intron 4 of 4)	intron (NM_001330483, intron 4 of 4)	23250	NM_001330483	55223		NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding
15865	chr1	151447271	151448480	+	0	NA	intron (NM_015100, intron 1 of 18)	L1MC5|LINE|L1	-5670	NM_207171	23126		NM_015100	ENSG00000143442	POGZ	MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m	pogo transposable element derived with ZNF domain	protein-coding
16978	chr1	155965151	155965700	+	0	NA	intron (NM_004723, intron 5 of 21)	intron (NM_004723, intron 5 of 21)	12750	NM_001350111	9181		NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|Lfc|NEDMHM|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding
19956	chr1	184866671	184867930	+	0	NA	intron (NM_052966, intron 5 of 13)	intron (NM_052966, intron 5 of 13)	107208	NM_052966	116496		NM_052966	ENSG00000135842	NIBAN1	C1orf24|FAM129A|GIG39|NIBAN	niban apoptosis regulator 1	protein-coding
134501	chr2	143333301	143333580	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	204021	NM_018460	55843		NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding
120447	chr19	44498771	44498930	+	0	NA	intron (NM_001278509, intron 1 of 4)	intron (NM_001278509, intron 1 of 4)	1672	NM_001278508	7733		NM_013256	ENSG00000167384	ZNF180	HHZ168	zinc finger protein 180	protein-coding
17549	chr1	156800351	156800650	+	0	NA	3' UTR (NM_005973, exon 7 of 7)	3' UTR (NM_005973, exon 7 of 7)	-15250	NM_001007792	4914		NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding
153123	chr22	23713871	23714030	+	0	NA	intron (NR_024448, intron 3 of 11)	intron (NR_024448, intron 3 of 11)	3473	NR_024448	91316		NR_024448	ENSG00000228315	GUSBP11	-	GUSB pseudogene 11	pseudo
6721	chr1	30043951	30044050	+	0	NA	Intergenic	Intergenic	-6388	NR_110790	101929406		NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
211633	chr7	106110151	106110630	+	0	NA	intron (NR_167730, intron 1 of 5)	intron (NR_167730, intron 1 of 5)	1922	NM_001381911	6856		NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
137705	chr2	197498671	197502200	+	0	NA	promoter-TSS (NM_001202485)	promoter-TSS (NM_001202485)	56	NM_001202485	100529241		NM_001202485	ENSG00000270757	HSPE1-MOB4	HSPE1-PHOCN	HSPE1-MOB4 readthrough	protein-coding
20057	chr1	185566771	185567630	+	0	NA	intron (NR_110793, intron 2 of 3)	intron (NR_110793, intron 2 of 3)	61288	NR_110793	101929093		NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA
210811	chr7	100874421	100875880	+	0	NA	promoter-TSS (NM_001128852)	promoter-TSS (NM_001128852)	47	NM_001128852	51593		NM_015908	ENSG00000087087	SRRT	ARS2|ASR2|serrate	serrate, RNA effector molecule	protein-coding
113987	chr19	10830971	10831330	+	0	NA	TTS (NR_104015)	TTS (NR_104015)	2177	NR_106851	102466737		NR_106851	ENSG00000275640	MIR6793	hsa-mir-6793	microRNA 6793	ncRNA
98566	chr17	47708471	47708830	+	0	NA	intron (NM_014726, intron 7 of 8)	intron (NM_014726, intron 7 of 8)	13386	NM_014726	9755		NM_014726	ENSG00000198933	TBKBP1	ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding
58919	chr13	19744971	19745330	+	0	NA	intron (NM_001354909, intron 4 of 8)	AluSz|SINE|Alu	37795	NM_001363660	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
180943	chr5	34929101	34930700	+	0	NA	exon (NM_001348420, exon 1 of 12)	exon (NM_001348420, exon 1 of 12)	341	NM_001348420	134218		NM_194283	ENSG00000168724	DNAJC21	BMFS3|DNAJA5|GS3|JJJ1	DnaJ heat shock protein family (Hsp40) member C21	protein-coding
28291	chr10	46090621	46092060	+	0	NA	Intergenic	Intergenic	-18155	NR_126580	653268		NM_001077685		AGAP7P	AGAP-7|AGAP7|CTGLF4|bA109G10.1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene	pseudo
223600	chr8	144305821	144306330	+	0	NA	intron (NM_005526, intron 1 of 12)	L1M4|LINE|L1	11240	NR_106907	102465511		NR_106907	ENSG00000284229	MIR6848	hsa-mir-6848	microRNA 6848	ncRNA
125370	chr2	11131151	11131450	+	0	NA	intron (NR_040080, intron 1 of 8)	intron (NR_040080, intron 1 of 8)	876	NR_040080	285150		NM_182586	ENSG00000145063	FLJ33534	-	Putative uncharacterized protein FLJ33534	ncRNA
91070	chr17	3035371	3035730	+	0	NA	3' UTR (NM_015085, exon 25 of 25)	3' UTR (NM_015085, exon 25 of 25)	28057	NM_014566	8386		NM_014566	ENSG00000262628	OR1D5	C17orf2|OR17-2|OR17-30|OR17-31|OR1D4	olfactory receptor family 1 subfamily D member 5	protein-coding
202234	chr6	156827251	156827780	+	0	NA	intron (NM_001371656, intron 2 of 20)	intron (NM_001371656, intron 2 of 20)	-47784	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
196844	chr6	47413801	47414400	+	0	NA	Intergenic	Intergenic	-63689	NM_012120	23607		NM_012120	ENSG00000198087	CD2AP	CMS	CD2 associated protein	protein-coding
194905	chr6	34699221	34699500	+	0	NA	Intergenic	AluJr|SINE|Alu	2415	NR_134626	101929243		NR_134625	ENSG00000272288	ILRUN-AS1	-	ILRUN antisense RNA 1	ncRNA
123106	chr19	51601121	51601550	+	0	NA	Intergenic	CpG	-6955	NR_034159	729975		NR_034159		LINC01530	-	long intergenic non-protein coding RNA 1530	ncRNA
125845	chr2	24419171	24419330	+	0	NA	Intergenic	AluSz|SINE|Alu	-58714	NM_001348186	50618		NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding
210536	chr7	100242501	100242900	+	0	NA	intron (NR_166147, intron 1 of 4)	intron (NR_166147, intron 1 of 4)	23452	NM_024070	79037		NM_024070	ENSG00000213413	PVRIG	C7orf15|CD112R	PVR related immunoglobulin domain containing	protein-coding
37935	chr11	34250951	34251800	+	0	NA	intron (NM_145804, intron 1 of 16)	intron (NM_145804, intron 1 of 16)	106635	NM_145804	25841		NM_145804	ENSG00000166016	ABTB2	ABTB2A|BTBD22	ankyrin repeat and BTB domain containing 2	protein-coding
79764	chr16	1362671	1362830	+	0	NA	TTS (NM_001367622)	TTS (NM_001367622)	10819	NM_032520	84572		NM_032520	ENSG00000090581	GNPTG	C16orf27|GNPTAG|LP2537|RJD9	N-acetylglucosamine-1-phosphate transferase subunit gamma	protein-coding
177582	chr4	120062671	120062830	+	0	NA	intron (NM_002358, intron 2 of 4)	L2|LINE|L2	4098	NM_002358	4085		NM_002358	ENSG00000164109	MAD2L1	HSMAD2|MAD2	mitotic arrest deficient 2 like 1	protein-coding
235096	chrX	40300571	40300750	+	0	NA	Intergenic	Intergenic	37743	NR_110386	101927476		NR_110386	ENSG00000236393	LINC03099	-	long intergenic non-protein coding RNA 3099	ncRNA
132932	chr2	111440421	111441550	+	0	NA	intron (NR_024373, intron 1 of 1)	AluSx1|SINE|Alu	54176	NR_136161	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
53797	chr12	69238921	69241200	+	0	NA	intron (NM_001300947, intron 1 of 10)	CpG	491	NM_001300947	11052		NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding
74701	chr15	62857221	62857760	+	0	NA	Intergenic	Intergenic	33533	NR_029709	406965		NR_029709	ENSG00000211137	MIR190A	MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a	microRNA 190a	ncRNA
107139	chr18	35127101	35127430	+	0	NA	intron (NR_046177, intron 5 of 6)	intron (NR_046177, intron 5 of 6)	85852	NM_001256420	10982		NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding
219622	chr8	80124021	80124480	+	0	NA	intron (NR_105035, intron 1 of 6)	AluJb|SINE|Alu	-43419	NM_001287142	7163		NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
24435	chr1	243596101	243596940	+	0	NA	intron (NM_005465, intron 8 of 13)	L1ME1|LINE|L1	246762	NM_181690	10000		NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding
237137	chrX	106933551	106933850	+	0	NA	Intergenic	Intergenic	13298	NM_020384	9075		NM_020384	ENSG00000165376	CLDN2	OAZON|claudin-2	claudin 2	protein-coding
59477	chr13	26251951	26252650	+	0	NA	Intergenic	AluJo|SINE|Alu	-1829	NM_001260	1024		NM_001260	ENSG00000132964	CDK8	IDDHBA|K35	cyclin dependent kinase 8	protein-coding
148945	chr21	10270051	10270470	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-143237	NR_169269	85319		NM_182482		BAGE2	CT2.2	BAGE family member 2 (pseudogene)	pseudo
223950	chr9	1018101	1018300	+	0	NA	Intergenic	Intergenic	-29943	NR_110643	102800446		NR_110643		LINC01230	TCONS_00015639|linc-DMRT2|lnc-DRMT2	long intergenic non-protein coding RNA 1230	ncRNA
194655	chr6	33622601	33622800	+	0	NA	intron (NM_002224, intron 1 of 57)	intron (NM_002224, intron 1 of 57)	1378	NM_002224	3710		NM_002224	ENSG00000096433	ITPR3	CMT1J|IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding
236695	chrX	77779151	77779600	+	0	NA	intron (NM_138270, intron 1 of 33)	intron (NM_138270, intron 1 of 33)	6841	NM_000489	546		NM_000489	ENSG00000085224	ATRX	JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX	ATRX chromatin remodeler	protein-coding
31879	chr10	100230801	100231250	+	0	NA	Intergenic	Intergenic	-1415	NM_001320928	1147		NM_001278	ENSG00000213341	CHUK	BPS2|IKBKA|IKK-1|IKK-alpha|IKK1|IKKA|NFKBIKA|TCF16	component of inhibitor of nuclear factor kappa B kinase complex	protein-coding
24957	chr10	1932671	1933030	+	0	NA	Intergenic	Intergenic	81498	NR_040253	282980		NR_040253		LINC00700	-	long intergenic non-protein coding RNA 700	ncRNA
35871	chr11	2387031	2388350	+	0	NA	intron (NM_004356, intron 1 of 7)	intron (NM_004356, intron 1 of 7)	-9698	NR_108080	101927682		NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA
28562	chr10	50636571	50637500	+	0	NA	Intergenic	Tigger10|DNA|TcMar-Tigger	12084	NR_126411	104355295		NR_126411		SGMS1-AS1	-	SGMS1 antisense RNA 1	ncRNA
86369	chr16	66555051	66555750	+	0	NA	intron (NM_001202509, intron 1 of 2)	L2a|LINE|L2	2824	NM_016951	51192		NM_016326	ENSG00000217555	CKLF	C32|CKLF1|CKLF2|CKLF3|CKLF4|HSPC224|UCK-1	chemokine like factor	protein-coding
13985	chr1	120609901	120610530	+	0	NA	intron (NR_144516, intron 5 of 43)	MIR3|SINE|MIR	51530	NR_168400	107985524		NR_168400		LOC107985524	-	uncharacterized LOC107985524	ncRNA
139958	chr2	230870021	230870650	+	0	NA	intron (NM_001012514, intron 1 of 4)	intron (NM_001012514, intron 1 of 4)	5385	NM_001012516	81618		NM_030926	ENSG00000135916	ITM2C	BRI3|BRICD2C|E25|E25C|ITM3	integral membrane protein 2C	protein-coding
52772	chr12	56680801	56681150	+	0	NA	intron (NM_001282601, intron 1 of 6)	AluJb|SINE|Alu	7309	NM_001282603	10728		NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding
37457	chr11	18246021	18247030	+	0	NA	intron (NM_001385671, intron 1 of 2)	MER5B|DNA|hAT-Charlie	2143	NM_030754	6289		NM_030754	ENSG00000134339	SAA2	SAA|SAA1	serum amyloid A2	protein-coding
178159	chr4	142354951	142355750	+	0	NA	intron (NM_001385334, intron 6 of 24)	intron (NM_001385334, intron 6 of 24)	47783	NM_001385461	8821		NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding
38396	chr11	44933621	44934080	+	0	NA	non-coding (NR_134612, exon 8 of 8)	non-coding (NR_134612, exon 8 of 8)	16310	NM_001318384	9537		NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding
207408	chr7	44306871	44307450	+	0	NA	intron (NM_172080, intron 1 of 19)	intron (NM_172080, intron 1 of 19)	18434	NM_001293170	816		NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB|CaMKIIbeta|MRD54	calcium/calmodulin dependent protein kinase II beta	protein-coding
202380	chr6	157822351	157823500	+	0	NA	promoter-TSS (NM_016224)	promoter-TSS (NM_016224)	-321	NM_016224	51429		NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding
211734	chr7	107150421	107150780	+	0	NA	intron (NM_002736, intron 6 of 10)	intron (NM_002736, intron 6 of 10)	-18361	NM_001244262	26959		NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
84486	chr16	30486821	30487530	+	0	NA	intron (NM_002209, intron 9 of 30)	intron (NM_002209, intron 9 of 30)	14433	NM_001114380	3683		NM_002209	ENSG00000005844	ITGAL	CD11A|LFA-1|LFA1A	integrin subunit alpha L	protein-coding
159036	chr3	11251251	11251950	+	0	NA	intron (NM_001098211, intron 1 of 1)	HERVIP10F-int|LTR|ERV1	-1099	NM_000861	3269		NM_000861	ENSG00000196639	HRH1	H1-R|H1R|HH1R|hisH1	histamine receptor H1	protein-coding
189266	chr5	172060871	172061030	+	0	NA	intron (NM_005990, intron 14 of 18)	L1M5|LINE|L1	-54312	NM_001378979	23291		NM_012300	ENSG00000072803	FBXW11	BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos|NEDJED	F-box and WD repeat domain containing 11	protein-coding
96715	chr17	41632521	41633050	+	0	NA	intron (NR_033415, intron 4 of 10)	(GT)n|Simple_repeat|Simple_repeat	7414	NR_033415	284116		NR_033415	ENSG00000290861	KRT42P	-	keratin 42, pseudogene	pseudo
181590	chr5	43389751	43390300	+	0	NA	intron (NM_148672, intron 1 of 2)	intron (NM_148672, intron 1 of 2)	7112	NM_001301875	56477		NM_019846	ENSG00000151882	CCL28	CCK1|MEC|SCYA28	C-C motif chemokine ligand 28	protein-coding
61517	chr13	57629651	57630200	+	0	NA	Intergenic	CpG	-1819	NM_001040429	27253		NM_014459	ENSG00000118946	PCDH17	PCDH68|PCH68	protocadherin 17	protein-coding
35178	chr11	782001	782600	+	0	NA	intron (NR_126342, intron 2 of 3)	intron (NR_126342, intron 2 of 3)	4722	NR_126342	171391		NM_138291	ENSG00000255284	GATD1-DT	NS3BP	GATD1 divergent transcript	ncRNA
139608	chr2	225028371	225028750	+	0	NA	intron (NM_014689, intron 1 of 55)	MLT1E2|LTR|ERVL-MaLR	13908	NM_014689	55619		NM_014689	ENSG00000135905	DOCK10	DRIP2|Nbla10300|ZIZ3	dedicator of cytokinesis 10	protein-coding
122748	chr19	50101871	50102280	+	0	NA	Intergenic	AluYa5|SINE|Alu	-1064	NR_024228	100169958		NR_024228		SNAR-A8	-	small NF90 (ILF3) associated RNA A8	snRNA
209890	chr7	91929501	91930000	+	0	NA	Intergenic	L1MC5a|LINE|L1	-11112	NM_147185	10142		NM_005751	ENSG00000127914	AKAP9	AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO	A-kinase anchoring protein 9	protein-coding
232039	chr9	133416721	133416980	+	0	NA	intron (NM_001279351, intron 1 of 7)	MIR|SINE|MIR	1160	NM_020385	57109		NM_020385	ENSG00000148300	REXO4	REX4|XPMC2|XPMC2H	REX4 homolog, 3'-5' exonuclease	protein-coding
96674	chr17	40909301	40909580	+	0	NA	Intergenic	Intergenic	-24198	NM_019010	54474		NM_019010	ENSG00000171431	KRT20	CD20|CK-20|CK20|K20|KRT21	keratin 20	protein-coding
102037	chr17	74862241	74863050	+	0	NA	non-coding (NR_047576, exon 12 of 12)	non-coding (NR_047576, exon 12 of 12)	-1802	NM_001278553	2905		NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding
91825	chr17	7175621	7176430	+	0	NA	intron (NM_001671, intron 5 of 8)	(CA)n|Simple_repeat|Simple_repeat	3345	NM_001671	432		NM_001671	ENSG00000141505	ASGR1	ASGPR|ASGPR1|CLEC4H1|HL-1	asialoglycoprotein receptor 1	protein-coding
172978	chr4	4053071	4053230	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-97722	NR_130740	348926		NR_024253	ENSG00000290374	FAM86EP	-	family with sequence similarity 86, member A pseudogene	pseudo
98762	chr17	48110801	48111250	+	0	NA	intron (NM_152244, intron 2 of 7)	intron (NM_152244, intron 2 of 7)	3259	NM_013323	29916		NM_013323	ENSG00000002919	SNX11	-	sorting nexin 11	protein-coding
17287	chr1	156432471	156432850	+	0	NA	Intergenic	Intergenic	-3112	NR_135263	10485		NM_006365	ENSG00000125462	MIR9-1HG	C1orf61|CROC4	MIR9-1 host gene	ncRNA
227633	chr9	92884751	92885050	+	0	NA	non-coding (NR_111003, exon 4 of 4)	non-coding (NR_111003, exon 4 of 4)	2333	NR_111003	642943		NR_111003		LOC642943	-	SPATA31 subfamily A pseudogene	pseudo
89897	chr16	89690601	89690800	+	0	NA	intron (NM_052987, intron 3 of 12)	intron (NM_052987, intron 3 of 12)	4011	NM_001098533	8558		NM_003674	ENSG00000185324	CDK10	ALSAS|PISSLRE	cyclin dependent kinase 10	protein-coding
158670	chr3	5125701	5126280	+	0	NA	intron (NM_018184, intron 1 of 6)	L1MA7|LINE|L1	3698	NM_018184	55207		NM_018184	ENSG00000134108	ARL8B	ARL10C|Gie1	ADP ribosylation factor like GTPase 8B	protein-coding
210732	chr7	100625571	100625730	+	0	NA	intron (NM_003227, intron 17 of 17)	AluJb|SINE|Alu	8000	NM_001206855	7036		NM_003227	ENSG00000106327	TFR2	HFE3|TFRC2	transferrin receptor 2	protein-coding
50222	chr12	46225971	46226130	+	0	NA	intron (NM_001278387, intron 6 of 17)	L1MC5|LINE|L1	40466	NM_001278389	81539		NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
4800	chr1	23581201	23581400	+	0	NA	Intergenic	Intergenic	-21799	NM_002167	3399		NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3	protein-coding
136171	chr2	174395421	174397180	+	0	NA	promoter-TSS (NM_004882)	promoter-TSS (NM_004882)	570	NM_024583	79634		NM_024583	ENSG00000144306	SCRN3	SES3	secernin 3	protein-coding
177786	chr4	122962751	122963050	+	0	NA	intron (NM_001317799, intron 9 of 10)	L2b|LINE|L2	39822	NM_001345856	166378		NM_145207	ENSG00000145375	AFG2A	AFG2|EHLMRS|NEDHSB|SPAF|SPATA5	AFG2 AAA ATPase homolog A	protein-coding
148671	chr21	6134851	6134950	+	0	NA	Intergenic	Intergenic	23769	NM_173354	150094		NM_173354	ENSG00000142178	SIK1	DEE30|MSK|SIK|SIK-1|SIK1B|SNF1LK	salt inducible kinase 1	protein-coding
115874	chr19	16565571	16567130	+	0	NA	intron (NM_024881, intron 4 of 5)	intron (NM_024881, intron 4 of 5)	6065	NM_024881	79939		NM_024881	ENSG00000127526	SLC35E1	-	solute carrier family 35 member E1	protein-coding
203111	chr6	166541901	166542650	+	0	NA	intron (NM_001006932, intron 2 of 21)	intron (NM_001006932, intron 2 of 21)	2415	NM_001318938	6196		NM_021135	ENSG00000071242	RPS6KA2	HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3	ribosomal protein S6 kinase A2	protein-coding
212862	chr7	130857001	130857400	+	0	NA	Intergenic	L1MA4|LINE|L1	19610	NR_029503	407021		NR_029503	ENSG00000284032	MIR29A	MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a	microRNA 29a	ncRNA
25480	chr10	6929551	6929650	+	0	NA	Intergenic	Intergenic	150002	NR_038291	100507127		NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA
163554	chr3	51709071	51709230	+	0	NA	exon (NM_000839, exon 2 of 6)	exon (NM_000839, exon 2 of 6)	2082	NM_001349117	2912		NM_000839	ENSG00000164082	GRM2	GLUR2|GPRC1B|MGLUR2|mGlu2	glutamate metabotropic receptor 2	protein-coding
10636	chr1	70208971	70209280	+	0	NA	intron (NM_001350606, intron 1 of 12)	intron (NM_001350606, intron 1 of 12)	3429	NM_001190987	9295		NM_004768	ENSG00000116754	SRSF11	NET2|SFRS11|dJ677H15.2|p54	serine and arginine rich splicing factor 11	protein-coding
32949	chr10	110411751	110412250	+	0	NA	Intergenic	AluSx|SINE|Alu	-85907	NM_004419	1847		NM_004419	ENSG00000138166	DUSP5	DUSP|HVH3	dual specificity phosphatase 5	protein-coding
26515	chr10	21173171	21173330	+	0	NA	promoter-TSS (NR_046283)	promoter-TSS (NR_046283)	-271	NM_001377325	10529		NM_006393	ENSG00000078114	NEBL	C10orf113|LASP2|LNEBL|bA165O3.1	nebulette	protein-coding
107248	chr18	38940701	38941600	+	0	NA	Intergenic	Intergenic	681025	NR_030628	100126323		NR_030628	ENSG00000283615	MIR924	MIRN924|hsa-mir-924	microRNA 924	ncRNA
116123	chr19	17323551	17324400	+	0	NA	TTS (NM_024050)	TTS (NM_024050)	10880	NM_020959	57719		NM_020959	ENSG00000074855	ANO8	KIAA1623|TMEM16H	anoctamin 8	protein-coding
227734	chr9	93061671	93061830	+	0	NA	intron (NM_001287007, intron 1 of 2)	intron (NM_001287007, intron 1 of 2)	3049	NM_001287007	203328		NM_145006	ENSG00000157303	SUSD3	-	sushi domain containing 3	protein-coding
57580	chr12	122337371	122337930	+	0	NA	intron (NM_001247997, intron 11 of 25)	intron (NM_001247997, intron 11 of 25)	-57892	NR_045382	100507066		NR_045382		CLIP1-AS1	-	CLIP1 antisense RNA 1	ncRNA
69775	chr14	99175551	99175650	+	0	NA	exon (NM_138576, exon 4 of 4)	exon (NM_138576, exon 4 of 4)	96597	NM_001282237	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
63495	chr13	114204771	114205580	+	0	NA	Intergenic	L1MB8|LINE|L1	-29670	NM_003903	8881		NM_003903	ENSG00000130177	CDC16	ANAPC6|APC6|CDC16Hs|CUT9	cell division cycle 16	protein-coding
63801	chr14	21381421	21381780	+	0	NA	intron (NM_007192, intron 1 of 25)	intron (NM_007192, intron 1 of 25)	2419	NM_007192	11198		NM_007192	ENSG00000092201	SUPT16H	CDC68|FACTP140|NEDDFAC|SPT16|SPT16/CDC68	SPT16 homolog, facilitates chromatin remodeling subunit	protein-coding
43918	chr11	90217601	90218000	+	0	NA	intron (NM_012124, intron 2 of 10).2	AluSx1|SINE|Alu	5249	NM_012124	26973		NM_012124	ENSG00000110172	CHORDC1	CHP1	cysteine and histidine rich domain containing 1	protein-coding
174667	chr4	41360651	41360850	+	0	NA	promoter-TSS (NM_001112717)	promoter-TSS (NM_001112717)	-57	NM_001330787	22998		NM_014988	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding
52576	chr12	56170201	56170800	+	0	NA	intron (NM_003075, intron 21 of 27)	AluJb|SINE|Alu	12141	NM_079423	4637		NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding
162637	chr3	48811321	48811580	+	0	NA	intron (NM_004157, intron 1 of 10)	AluJb|SINE|Alu	36424	NM_001321982	5576		NM_004157	ENSG00000114302	PRKAR2A	PKR2|PRKAR2	protein kinase cAMP-dependent type II regulatory subunit alpha	protein-coding
214420	chr7	149837451	149838930	+	0	NA	promoter-TSS (NM_001099220)	promoter-TSS (NM_001099220)	-185	NM_001099220	643641		NM_001099220	ENSG00000106479	ZNF862	-	zinc finger protein 862	protein-coding
28766	chr10	62040801	62041200	+	0	NA	intron (NM_032199, intron 4 of 9)	intron (NM_032199, intron 4 of 9)	-8357	NM_001244638	84159		NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding
69614	chr14	97602351	97603650	+	0	NA	Intergenic	Intergenic	83658	NR_033943	100129345		NR_033943	ENSG00000197176	LINC02291	-	long intergenic non-protein coding RNA 2291	ncRNA
51172	chr12	50215801	50216000	+	0	NA	intron (NM_001113547, intron 1 of 7)	AluSz6|SINE|Alu	6758	NM_001113547	51474		NM_016357	ENSG00000050405	LIMA1	EPLIN|LDLCQ8|SREBP3	LIM domain and actin binding 1	protein-coding
179416	chr4	184265751	184266330	+	0	NA	Intergenic	L1M6|LINE|L1	-48167	NM_153343	133121		NM_153343	ENSG00000164303	ENPP6	NPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding
181329	chr5	40389001	40389550	+	0	NA	Intergenic	Intergenic	-290640	NM_000958	5734		NM_000958	ENSG00000171522	PTGER4	EP4|EP4R	prostaglandin E receptor 4	protein-coding
45256	chr11	117996651	117996830	+	0	NA	intron (NM_001558, intron 6 of 6)	AluSx1|SINE|Alu	10346	NM_001558	3587		NM_001558	ENSG00000110324	IL10RA	CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R	interleukin 10 receptor subunit alpha	protein-coding
80309	chr16	2271671	2272050	+	0	NA	TTS (NR_030636)	TTS (NR_030636)	113	NR_030636	100126328		NR_030636	ENSG00000284346	MIR940	MIRN940|hsa-mir-940|mir-940	microRNA 940	ncRNA
63460	chr13	114131731	114133230	+	0	NA	exon (NM_007368, exon 1 of 24)	exon (NM_007368, exon 1 of 24)	143	NM_007368	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
188244	chr5	151034001	151034200	+	0	NA	intron (NM_006058, intron 15 of 17)	intron (NM_006058, intron 15 of 17)	13509	NM_002084	2878		NM_002084	ENSG00000211445	GPX3	GPx-P|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding
194360	chr6	32962371	32962730	+	0	NA	Intergenic	L1MA4|LINE|L1	-6044	NM_005104	6046		NM_005104	ENSG00000204256	BRD2	BRD2-IT1|D6S113E|FSH|FSHRG1|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding
155259	chr22	37995271	37995500	+	0	NA	intron (NM_001301130, intron 5 of 5)	L2a|LINE|L2	6591	NR_039759	100616146		NR_039759	ENSG00000284266	MIR4534	-	microRNA 4534	ncRNA
1158	chr1	2203151	2203730	+	0	NA	5' UTR (NM_001146310, exon 4 of 8)	5' UTR (NM_001146310, exon 4 of 8)	4293	NM_001146310	199990		NM_182533	ENSG00000162585	FAAP20	C1orf86|FP7162	FA core complex associated protein 20	protein-coding
63108	chr13	113313571	113313950	+	0	NA	intron (NM_005561, intron 4 of 8)	intron (NM_005561, intron 4 of 8)	16521	NM_005561	3916		NM_005561	ENSG00000185896	LAMP1	CD107a|LAMPA|LGP120	lysosomal associated membrane protein 1	protein-coding
33237	chr10	114179251	114179550	+	0	NA	promoter-TSS (NM_001365891)	promoter-TSS (NM_001365891)	47	NM_001365891	56165		NM_031278	ENSG00000095627	TDRD1	CT41.1	tudor domain containing 1	protein-coding
50675	chr12	48849501	48850250	+	0	NA	intron (NM_004818, intron 1 of 16)	intron (NM_004818, intron 1 of 16)	2288	NM_004818	9416		NM_004818	ENSG00000174243	DDX23	PRPF28|SNRNP100|U5-100K|U5-100KD|prp28	DEAD-box helicase 23	protein-coding
37610	chr11	20128151	20128630	+	0	NA	Intergenic	Intergenic	32085	NM_001029865	120237		NM_001029865	ENSG00000109851	DBX1	HLX1	developing brain homeobox 1	protein-coding
86661	chr16	67470451	67470750	+	0	NA	intron (NM_004691, intron 1 of 7)	intron (NM_004691, intron 1 of 7)	10557	NM_004691	9114		NM_004691	ENSG00000159720	ATP6V0D1	ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD	ATPase H+ transporting V0 subunit d1	protein-coding
159262	chr3	12949171	12949930	+	0	NA	intron (NM_001134382, intron 1 of 13)	intron (NM_001134382, intron 1 of 13)	18180	NM_014869	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
233615	chrX	375601	375800	+	0	NA	intron (NM_013239, intron 1 of 12)	CpG	11207	NM_013239	28227		NM_013239	ENSG00000167393	PPP2R3B	NYREN8|PPP2R3L|PPP2R3LY|PR48|PR70	protein phosphatase 2 regulatory subunit B''beta	protein-coding
191503	chr6	11256451	11256750	+	0	NA	intron (NM_001142393, intron 2 of 7)	AluJr|SINE|Alu	-23918	NM_001271033	4739		NM_006403	ENSG00000111859	NEDD9	CAS-L|CAS2|CASL|CASS2|HEF1	neural precursor cell expressed, developmentally down-regulated 9	protein-coding
189032	chr5	169639151	169639550	+	0	NA	intron (NR_156756, intron 1 of 52)	intron (NR_156756, intron 1 of 52)	2075	NR_156756	1794		NM_004946	ENSG00000134516	DOCK2	IMD40	dedicator of cytokinesis 2	protein-coding
48276	chr12	8697021	8698660	+	0	NA	promoter-TSS (NR_147947)	promoter-TSS (NR_147947)	-60	NM_001352271	57494		NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding
106675	chr18	23207401	23207600	+	0	NA	intron (NR_023359, intron 3 of 6)	L2b|LINE|L2	51675	NM_138375	91768		NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
220207	chr8	96157251	96158230	+	0	NA	intron (NM_001001557, intron 1 of 1)	CpG	3066	NM_001001557	392255		NM_001001557	ENSG00000156466	GDF6	BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4	growth differentiation factor 6	protein-coding
6372	chr1	27870721	27871280	+	0	NA	Intergenic	AluSp|SINE|Alu	-1543	NM_004848	9473		NM_004848	ENSG00000130775	THEMIS2	C1orf38|ICB-1|ICB1	thymocyte selection associated family member 2	protein-coding
50714	chr12	48954971	48955480	+	0	NA	intron (NM_001659, intron 1 of 4)	intron (NM_001659, intron 1 of 4)	2262	NM_001659	377		NM_001659	ENSG00000134287	ARF3	-	ADP ribosylation factor 3	protein-coding
70184	chr14	100404271	100404430	+	0	NA	intron (NM_001350949, intron 2 of 6)	Tigger16b|DNA|TcMar-Tigger	27865	NM_001350947	79446		NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding
127710	chr2	43240071	43240430	+	0	NA	intron (NR_144316, intron 35 of 36)	intron (NR_144316, intron 35 of 36)	13039	NR_027251	100129726		NM_178529	ENSG00000279873	LINC01126	-	long intergenic non-protein coding RNA 1126	ncRNA
190606	chr5	181169451	181170500	+	0	NA	Intergenic	CpG	15032	NM_206880	285659		NM_206880	ENSG00000182613	OR2V2	OR2V3|OST713	olfactory receptor family 2 subfamily V member 2	protein-coding
195518	chr6	37210351	37211130	+	0	NA	Intergenic	Intergenic	40588	NM_002648	5292		NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding
48083	chr12	7160871	7161030	+	0	NA	Intergenic	Intergenic	-27703	NM_001351124	5830		NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding
23372	chr1	228168371	228168530	+	0	NA	intron (NM_001010867, intron 1 of 2)	Tigger2a|DNA|TcMar-Tigger	2646	NM_001010867	200205		NM_001010867	ENSG00000181873	IBA57	C1orf69|MMDS3|SPG74	iron-sulfur cluster assembly factor IBA57	protein-coding
117002	chr19	18902051	18902450	+	0	NA	intron (NM_199444, intron 6 of 8)	AluJr|SINE|Alu	-5523	NM_001290265	10715		NM_021267	ENSG00000223802	CERS1	EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1	ceramide synthase 1	protein-coding
222086	chr8	130360151	130360680	+	0	NA	intron (NM_001362924, intron 2 of 30)	intron (NM_001362924, intron 2 of 30)	-63882	NR_002765	29065		NM_014152		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA
233488	chr9	137878551	137878850	+	0	NA	intron (NM_000718, intron 1 of 45)	CpG	918	NM_000718	774		NM_000718	ENSG00000148408	CACNA1B	BIII|CACNL1A5|CACNN|Cav2.2|DYT23|NEDNEH	calcium voltage-gated channel subunit alpha1 B	protein-coding
102128	chr17	75054571	75054930	+	0	NA	intron (NM_015353, intron 3 of 5)	AluY|SINE|Alu	7525	NM_015353	23510		NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding
23901	chr1	234975101	234975300	+	0	NA	Intergenic	Intergenic	-11201	NR_125945	101927851		NR_125945	ENSG00000238005	LNCATV	-	lncRNA negative regulator of antiviral signaling	ncRNA
139345	chr2	219629301	219629800	+	0	NA	intron (NR_048551, intron 4 of 22)	intron (NR_048551, intron 4 of 22)	1920	NM_005070	6508		NM_005070	ENSG00000114923	SLC4A3	AE3|CAE3/BAE3|SLC2C|SQT7	solute carrier family 4 member 3	protein-coding
190956	chr6	2917171	2917330	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-13941	NM_004155	5272		NM_004155	ENSG00000170542	SERPINB9	CAP-3|CAP3|PI-9|PI9	serpin family B member 9	protein-coding
139870	chr2	230643321	230644530	+	0	NA	Intergenic	Intergenic	56604	NR_040038	151475		NR_040038	ENSG00000226125	LINC01907	-	long intergenic non-protein coding RNA 1907	ncRNA
181023	chr5	35865351	35865850	+	0	NA	intron (NM_002185, intron 2 of 7)	L1PA5|LINE|L1	8709	NM_002185	3575		NM_002185	ENSG00000168685	IL7R	CD127|CDW127|IL-7R-alpha|IL-7Ralpha|IL7RA|IL7Ralpha|ILRA|IMD104|lnc-IL7R|sIL-7R	interleukin 7 receptor	protein-coding
68429	chr14	81268071	81268500	+	0	NA	3' UTR (NM_001366850, exon 8 of 8)	3' UTR (NM_001366850, exon 8 of 8)	-46895	NM_201595	2957		NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding
22397	chr1	219385801	219386000	+	0	NA	Intergenic	Intergenic	171424	NR_135822	102723886		NR_135822		LYPLAL1-AS1	-	LYPLAL1 antisense RNA 1	ncRNA
223878	chr9	248871	249700	+	0	NA	intron (NM_203447, intron 1 of 47)	intron (NM_203447, intron 1 of 47)	-23761	NM_001190458	81704		NM_203447	ENSG00000107099	DOCK8	HEL-205|HIES2|MRD2|ZIR8	dedicator of cytokinesis 8	protein-coding
29145	chr10	68601821	68602080	+	0	NA	intron (NM_030625, intron 3 of 11)	intron (NM_030625, intron 3 of 11)	41613	NM_030625	80312		NM_030625	ENSG00000138336	TET1	CXXC6|LCX|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
172034	chr4	999151	999730	+	0	NA	promoter-TSS (NM_001363576)	promoter-TSS (NM_001363576)	-270	NM_001363576	3425		NM_000203	ENSG00000127415	IDUA	IDA|MPS1|MPSI	alpha-L-iduronidase	protein-coding
13059	chr1	111454871	111455030	+	0	NA	intron (NM_001688, intron 3 of 6)	L2a|LINE|L2	5486	NM_001688	515		NM_001688	ENSG00000116459	ATP5PB	ATP5F1|PIG47	ATP synthase peripheral stalk-membrane subunit b	protein-coding
127567	chr2	42546921	42547180	+	0	NA	intron (NM_001282755, intron 2 of 17)	intron (NM_001282755, intron 2 of 17)	-20995	NM_001282756	57504		NM_020744	ENSG00000057935	MTA3	-	metastasis associated 1 family member 3	protein-coding
164064	chr3	53885371	53885600	+	0	NA	3' UTR (NM_021237, exon 5 of 5)	3' UTR (NM_021237, exon 5 of 5)	-3333	NM_022899	93973		NM_022899	ENSG00000113812	ACTR8	ARP8|INO80N|hArp8	actin related protein 8	protein-coding
148358	chr20	63847121	63848250	+	0	NA	Intergenic	Intergenic	-13813	NM_080622	140701		NM_080622	ENSG00000183260	ABHD16B	C20orf135|dJ591C20.1	abhydrolase domain containing 16B	protein-coding
156987	chr22	42501751	42502230	+	0	NA	non-coding (NR_027786, exon 3 of 11)	non-coding (NR_027786, exon 3 of 11)	1411	NR_027786	94009		NM_170694	ENSG00000293485	SERHL	BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1	serine hydrolase like (pseudogene)	pseudo
129480	chr2	69596771	69597530	+	0	NA	intron (NM_001371577, intron 2 of 14)	intron (NM_001371577, intron 2 of 14)	46588	NM_001371575	22848		NM_014911	ENSG00000115977	AAK1	-	AP2 associated kinase 1	protein-coding
217659	chr8	30086921	30087430	+	0	NA	Intergenic	AluJb|SINE|Alu	-3967	NM_001284239	51669		NM_016127	ENSG00000133872	SARAF	FOAP-7|HSPC035|TMEM66|XTP3	store-operated calcium entry associated regulatory factor	protein-coding
147993	chr20	63017371	63017600	+	0	NA	intron (NR_033370, intron 1 of 4)	intron (NR_033370, intron 1 of 4)	8102	NR_033370	63930		NR_033370	ENSG00000272259	LINC01749	-	long intergenic non-protein coding RNA 1749	ncRNA
67098	chr14	68286601	68286900	+	0	NA	intron (NM_133509, intron 7 of 10)	intron (NM_133509, intron 7 of 10)	342037	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
172301	chr4	1578321	1579900	+	0	NA	Intergenic	CpG	104881	NM_001013622	152877		NM_001013622	ENSG00000174137	FAM53A	DNTNP	family with sequence similarity 53 member A	protein-coding
47854	chr12	6623601	6624000	+	0	NA	intron (NM_020400, intron 1 of 1)	intron (NM_020400, intron 1 of 1)	7849	NM_001142961	57121		NM_020400	ENSG00000184574	LPAR5	GPR92|GPR93|KPG_010|LPA5	lysophosphatidic acid receptor 5	protein-coding
31167	chr10	91088801	91089130	+	0	NA	Intergenic	Intergenic	43157	NR_047467	100874184		NR_047467		LINC00502	-	long intergenic non-protein coding RNA 502	ncRNA
73757	chr15	45454451	45455430	+	0	NA	Intergenic	LTR101_Mam|LTR|ERVL	21890	NR_030599	100126311		NR_030599	ENSG00000284386	MIR147B	MIRN147B|mir-147b	microRNA 147b	ncRNA
12535	chr1	108572201	108572600	+	0	NA	intron (NM_001010883, intron 1 of 10)	L1MC1|LINE|L1	12300	NM_001010883	284611		NM_001010883	ENSG00000162636	EEIG2	FAM102B|SYM-3B	EEIG family member 2	protein-coding
101153	chr17	65056101	65057880	+	0	NA	promoter-TSS (NM_006572)	promoter-TSS (NM_006572)	-250	NM_006572	10672		NM_006572	ENSG00000120063	GNA13	G13|HG1N	G protein subunit alpha 13	protein-coding
87638	chr16	74556351	74556650	+	0	NA	intron (NM_001145667, intron 1 of 25)	AluJr|SINE|Alu	50614	NM_012201	2734		NM_012201	ENSG00000090863	GLG1	CFR-1|ESL-1|MG-160|MG160	golgi glycoprotein 1	protein-coding
186445	chr5	136242771	136242930	+	0	NA	intron (NM_020389, intron 7 of 11)	MER5A|DNA|hAT-Charlie	16195	NR_133682	106478968		NR_133682	ENSG00000250947	TRPC7-AS2	CTB-28J9.2	TRPC7 antisense RNA 2	ncRNA
105076	chr17	82100501	82100700	+	0	NA	TTS (NM_198082)	TTS (NM_198082)	-2364	NM_004104	2194		NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding
182058	chr5	55935851	55936550	+	0	NA	non-coding (NR_120480, exon 18 of 18)	non-coding (NR_120480, exon 18 of 18)	58763	NM_002184	3572		NM_002184	ENSG00000134352	IL6ST	CD130|CDW130|GP130|HIES4|HIES4A|HIES4B|IL-6RB|IMD94|STWS2|sGP130	interleukin 6 cytokine family signal transducer	protein-coding
219457	chr8	73103401	73103600	+	0	NA	Intergenic	L2a|LINE|L2	-10328	NM_153225	157869		NM_153225	ENSG00000164764	SBSPON	C8orf84|RPESP	somatomedin B and thrombospondin type 1 domain containing	protein-coding
120331	chr19	43535621	43537150	+	0	NA	TTS (NM_174945)	TTS (NM_174945)	3197	NM_174945	284346		NM_174945	ENSG00000176472	ZNF575	-	zinc finger protein 575	protein-coding
238154	chrX	136778121	136778630	+	0	NA	intron (NM_004840, intron 2 of 21)	MIRb|SINE|MIR	2557	NM_004840	9459		NM_004840	ENSG00000129675	ARHGEF6	COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX	Rac/Cdc42 guanine nucleotide exchange factor 6	protein-coding
93376	chr17	18248201	18249230	+	0	NA	exon (NM_002018, exon 18 of 30)	exon (NM_002018, exon 18 of 30)	10023	NM_001256265	2314		NM_002018	ENSG00000177731	FLII	CMD2J|FLI|FLIL|Fli1	FLII actin remodeling protein	protein-coding
110051	chr19	1476151	1476730	+	0	NA	intron (NM_152482, intron 2 of 2)	intron (NM_152482, intron 2 of 2)	2775	NM_152482	148223		NM_152482	ENSG00000119559	C19orf25	-	chromosome 19 open reading frame 25	protein-coding
200550	chr6	136266751	136267130	+	0	NA	intron (NM_001363659, intron 10 of 11)	intron (NM_001363659, intron 10 of 11)	-16629	NM_001099286	113115		NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding
120004	chr19	41928801	41929650	+	0	NA	promoter-TSS (NM_001365103)	promoter-TSS (NM_001365103)	405	NR_135626	9138		NM_004706	ENSG00000076928	ARHGEF1	GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5	Rho guanine nucleotide exchange factor 1	protein-coding
217909	chr8	37898511	37900150	+	0	NA	exon (NM_001002814, exon 1 of 6)	exon (NM_001002814, exon 1 of 6)	167	NM_001002814	80223		NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding
103785	chr17	79009001	79010480	+	0	NA	promoter-TSS (NM_138793)	promoter-TSS (NM_138793)	24	NM_001159772	124583		NM_138793	ENSG00000171302	CANT1	DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY	calcium activated nucleotidase 1	protein-coding
237028	chrX	102720501	102721250	+	0	NA	intron (NM_001142524, intron 1 of 3)	intron (NM_001142524, intron 1 of 3)	132	NM_001142527	80823		NM_030639	ENSG00000198908	GPRASP3	BHLHB9|GASP3|p60TRP	G protein-coupled receptor associated sorting protein family member 3	protein-coding
66442	chr14	61537421	61537930	+	0	NA	intron (NM_006255, intron 12 of 13)	intron (NM_006255, intron 12 of 13)	32519	NR_110417	101927780		NR_110416	ENSG00000250548	LINC01303	-	long intergenic non-protein coding RNA 1303	ncRNA
11503	chr1	90845221	90845480	+	0	NA	intron (NR_147931, intron 1 of 2)	intron (NR_147931, intron 1 of 2)	6288	NR_135038	105378853		NR_135038	ENSG00000233593	LINC02609	-	long intergenic non-protein coding RNA 2609	ncRNA
63073	chr13	113164421	113165480	+	0	NA	intron (NM_001256134, intron 6 of 8)	intron (NM_001256134, intron 6 of 8)	6296	NM_001256134	8858		NM_003891	ENSG00000126231	PROZ	PZ	protein Z, vitamin K dependent plasma glycoprotein	protein-coding
124339	chr19	58307351	58307880	+	0	NA	intron (NR_144445, intron 2 of 3)	HERVK3-int|LTR|ERVK	2241	NR_144445	105372481		NM_001396080	ENSG00000142396	ERVK3-1	-	endogenous retrovirus group K3 member 1	protein-coding
169872	chr3	177337571	177338230	+	0	NA	Intergenic	Intergenic	43458	NR_047465	100820709		NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
73277	chr15	41851801	41852500	+	0	NA	intron (NM_016642, intron 62 of 67)	intron (NM_016642, intron 62 of 67)	13337	NM_001114633	100137049		NM_001114633	ENSG00000243708	PLA2G4B	HsT16992|cPLA2-beta	phospholipase A2 group IVB	protein-coding
172807	chr4	3010071	3010250	+	0	NA	intron (NM_182982, intron 7 of 15)	intron (NM_182982, intron 7 of 15)	46589	NM_005307	2868		NM_005307	ENSG00000125388	GRK4	GPRK2L|GPRK4|GRK4a|IT11	G protein-coupled receptor kinase 4	protein-coding
197815	chr6	87730111	87730450	+	0	NA	Intergenic	Intergenic	-28047	NM_018064	55122		NM_018064	ENSG00000135334	AKIRIN2	C6orf166|FBI1|dJ486L4.2	akirin 2	protein-coding
122767	chr19	50137901	50138180	+	0	NA	Intergenic	AluSx1|SINE|Alu	1197	NR_024230	100170217		NR_024230		SNAR-B2	-	small NF90 (ILF3) associated RNA B2	snRNA
37041	chr11	12189251	12190030	+	0	NA	intron (NR_144415, intron 2 of 26)	intron (NR_144415, intron 2 of 26)	25957	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA
114059	chr19	11051221	11051480	+	0	NA	intron (NR_164683, intron 31 of 35)	intron (NR_164683, intron 31 of 35)	-38113	NM_001195799	3949		NM_000527	ENSG00000130164	LDLR	FH|FHC|FHCL1|LDLCQ2	low density lipoprotein receptor	protein-coding
118919	chr19	38731851	38732250	+	0	NA	TTS (NM_001322033)	TTS (NM_001322033)	12424	NM_144691	147968		NM_144691	ENSG00000182472	CAPN12	-	calpain 12	protein-coding
158999	chr3	10335201	10335600	+	0	NA	intron (NM_001330611, intron 20 of 21)	intron (NM_001330611, intron 20 of 21)	5171	NR_036084	100422933		NR_036084	ENSG00000264534	MIR378B	-	microRNA 378b	ncRNA
56563	chr12	117065921	117066180	+	0	NA	intron (NR_031766, intron 2 of 7)	L2b|LINE|L2	33366	NR_031766	54997		NM_017899	ENSG00000088992	TESC	CHP3|TSC	tescalcin	protein-coding
95262	chr17	35489171	35489330	+	0	NA	intron (NM_001363830, intron 2 of 4)	intron (NM_001363830, intron 2 of 4)	-1511	NM_001195790	100506736		NM_001145027	ENSG00000205045	SLFN12L	-	schlafen family member 12 like	protein-coding
16824	chr1	155622251	155622450	+	0	NA	Intergenic	LTR12F|LTR|ERV1	12132	NM_018116	55154		NM_018116	ENSG00000125459	MSTO1	LST005|MMYAT|MST	misato mitochondrial distribution and morphology regulator 1	protein-coding
31369	chr10	93751951	93752130	+	0	NA	Intergenic	Intergenic	-5769	NM_001308276	9211		NM_005097	ENSG00000108231	LGI1	ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099	leucine rich glioma inactivated 1	protein-coding
35361	chr11	1250351	1250650	+	0	NA	promoter-TSS (NR_157183)	promoter-TSS (NR_157183)	-824	NR_157183	112577518		NR_157183	ENSG00000255177	MUC5B-AS1	-	MUC5B antisense RNA 1	ncRNA
175409	chr4	70900451	70900550	+	0	NA	Intergenic	AluSg|SINE|Alu	-1869	NM_001244766	92597		NM_173468	ENSG00000173542	MOB1B	MATS2|MOB4A|MOBKL1A	MOB kinase activator 1B	protein-coding
63286	chr13	113971601	113972050	+	0	NA	intron (NM_001365455, intron 1 of 6)	intron (NM_001365455, intron 1 of 6)	2251	NM_001365455	100507747		NM_001365455	ENSG00000283199	C13orf46	-	chromosome 13 open reading frame 46	protein-coding
86879	chr16	67978101	67978500	+	0	NA	exon (NM_001129758, exon 4 of 10)	exon (NM_001129758, exon 4 of 10)	2199	NM_001370198	64180		NM_022357	ENSG00000141096	DPEP3	MBD3	dipeptidase 3	protein-coding
46007	chr11	121583451	121583750	+	0	NA	intron (NM_003105, intron 26 of 47)	intron (NM_003105, intron 26 of 47)	-101811	NR_169501	105369535		NR_169501		LOC105369535	-	uncharacterized LOC105369535	ncRNA
55336	chr12	103955101	103955500	+	0	NA	intron (NM_001135570, intron 2 of 2)	AluSz6|SINE|Alu	1915	NM_001135570	728568		NM_001135570	ENSG00000204954	UQCC6	BR|BRAWNIN|C12orf73	ubiquinol-cytochrome c reductase complex assembly factor 6	protein-coding
134628	chr2	144418651	144418950	+	0	NA	intron (NM_001171653, intron 3 of 8)	L1PB1|LINE|L1	-85731	NM_001376325	79712		NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|QTMAN|mat-Xa	glycosyltransferase like domain containing 1	protein-coding
111989	chr19	4913771	4914400	+	0	NA	intron (NM_013282, intron 1 of 15)	AluSp|SINE|Alu	3718	NM_013282	29128		NM_013282	ENSG00000276043	UHRF1	ICBP90|Np95|RNF106|TDRD22|hNP95|hUHRF1|huNp95	ubiquitin like with PHD and ring finger domains 1	protein-coding
221898	chr8	128605321	128605780	+	0	NA	Intergenic	Intergenic	-40871	NR_121673	101927774		NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA
22199	chr1	212434221	212434630	+	0	NA	intron (NR_026598, intron 1 of 2)	MER68B|LTR|ERVL	1505	NR_026598	29937		NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding
72561	chr15	34496071	34496580	+	0	NA	Intergenic	Intergenic	32046	NR_036050	100302160		NR_036050	ENSG00000221649	MIR1233-1	MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1	microRNA 1233-1	ncRNA
67964	chr14	74866851	74867250	+	0	NA	intron (NR_169190, intron 1 of 5)	L2a|LINE|L2	9095	NM_001243007	283571		NM_173606	ENSG00000119608	PROX2	PROX-2	prospero homeobox 2	protein-coding
205024	chr7	6502401	6502600	+	0	NA	intron (NM_001145118, intron 18 of 21)	AluJr|SINE|Alu	-18348	NM_006854	11014		NM_006854	ENSG00000136240	KDELR2	ELP-1|ELP1|ERD2.2|OI21	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding
120837	chr19	45508201	45510030	+	0	NA	intron (NM_003370, intron 1 of 12)	intron (NM_003370, intron 1 of 12)	1636	NM_003370	7408		NM_003370	ENSG00000125753	VASP	-	vasodilator stimulated phosphoprotein	protein-coding
12114	chr1	100044071	100044230	+	0	NA	intron (NM_033055, intron 1 of 11)	L1PB2|LINE|L1	6055	NM_033055	64645		NM_033055	ENSG00000156875	MFSD14A	HAIT1|HIAT1	major facilitator superfamily domain containing 14A	protein-coding
105343	chr17	82625271	82625430	+	0	NA	intron (NM_019613, intron 5 of 9)	intron (NM_019613, intron 5 of 9)	23094	NM_019613	56270		NM_019613	ENSG00000141580	WDR45B	NEDSBAS|WDR45L|WIPI-3|WIPI3	WD repeat domain 45B	protein-coding
20441	chr1	198519071	198520100	+	0	NA	Intergenic	L2|LINE|L2	21095	NM_001376861	127124		NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding
199925	chr6	127887401	127887800	+	0	NA	intron (NM_001164687, intron 1 of 5).2	L1MB8|LINE|L1	13481	NM_001010923	387357		NM_001010923	ENSG00000172673	THEMIS	C6orf190|C6orf207|GASP|SPOT|THEMIS1|TSEPA	thymocyte selection associated	protein-coding
198235	chr6	98950271	98950430	+	0	NA	Intergenic	L1MA4|LINE|L1	-2344	NM_012160	26235		NM_012160	ENSG00000112234	FBXL4	FBL4|FBL5|MTDPS13	F-box and leucine rich repeat protein 4	protein-coding
218012	chr8	38454301	38454850	+	0	NA	intron (NM_001174064, intron 2 of 18)	intron (NM_001174064, intron 2 of 18)	13149	NM_001174066	2260		NM_015850	ENSG00000077782	FGFR1	BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1	fibroblast growth factor receptor 1	protein-coding
120496	chr19	44764001	44764400	+	0	NA	Intergenic	Intergenic	5543	NR_107052	102465879		NR_107052	ENSG00000284258	MIR8085	hsa-mir-8085	microRNA 8085	ncRNA
214952	chr7	151796301	151796500	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-9938	NM_001354885	644090		NM_001354885	ENSG00000242048	PRKAG2-AS2	-	PRKAG2 antisense RNA 2	ncRNA
122510	chr19	49592901	49594430	+	0	NA	intron (NM_020719, intron 2 of 13)	intron (NM_020719, intron 2 of 13)	2483	NM_020719	57479		NM_020719	ENSG00000126464	PRR12	KIAA1205|NOC	proline rich 12	protein-coding
48756	chr12	11170101	11170300	+	0	NA	promoter-TSS (NM_001271592).2	promoter-TSS (NM_001271592).2	-994	NM_001271592	100129361		NM_001271592	ENSG00000256537	SMIM10L1	-	small integral membrane protein 10 like 1	protein-coding
105227	chr17	82370521	82370780	+	0	NA	Intergenic	Intergenic	-1115	NM_018949	2837		NM_018949	ENSG00000181408	UTS2R	GPR14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding
235229	chrX	41377451	41377950	+	0	NA	Intergenic	Intergenic	43534	NM_001363819	1654		NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102|MRXSSB	DEAD-box helicase 3 X-linked	protein-coding
72292	chr15	30991271	30992380	+	0	NA	promoter-TSS (NM_017762).2	promoter-TSS (NM_017762).2	-197	NM_017762	54893		NM_017762	ENSG00000166912	MTMR10	-	myotubularin related protein 10	protein-coding
211082	chr7	102483201	102484030	+	0	NA	exon (NM_001277335, exon 20 of 20)	exon (NM_001277335, exon 20 of 20)	-4693	NR_163857	5439		NM_006234	ENSG00000005075	POLR2J	POLR2J1|RPB11|RPB11A|RPB11m|hRPB14	RNA polymerase II subunit J	protein-coding
194113	chr6	31954271	31954700	+	0	NA	intron (NM_002904, intron 7 of 10)	intron (NM_002904, intron 7 of 10)	2455	NR_031601	100302242		NR_031601	ENSG00000284446	MIR1236	MIRN1236|hsa-mir-1236	microRNA 1236	ncRNA
18355	chr1	161227171	161228200	+	0	NA	TTS (NR_049819)	TTS (NR_049819)	499	NR_049819	100847090		NR_049819	ENSG00000284035	MIR5187	mir-5187	microRNA 5187	ncRNA
25266	chr10	6092771	6093400	+	0	NA	intron (NM_001145547, intron 1 of 11)	intron (NM_001145547, intron 1 of 11)	3739	NM_001145547	84991		NM_032905	ENSG00000134453	RBM17	SPF45	RNA binding motif protein 17	protein-coding
214602	chr7	150680821	150681280	+	0	NA	Intergenic	L1P1|LINE|L1	-4656	NM_015660	26157		NM_015660	ENSG00000106560	GIMAP2	HIMAP2|IAN12|IMAP2	GTPase, IMAP family member 2	protein-coding
119240	chr19	39477571	39477980	+	0	NA	Intergenic	AluJr|SINE|Alu	-3063	NM_001329559	92609		NM_001001563	ENSG00000105197	TIMM50	MGCA9|TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
95591	chr17	37361551	37361850	+	0	NA	intron (NM_198839, intron 4 of 59)	intron (NM_198839, intron 4 of 59)	-2584	NM_198836	31		NM_000664	ENSG00000278540	ACACA	ACAC|ACACAD|ACACalpha|ACC|ACC1|ACCA|ACCalpha|Acac1|hACC1	acetyl-CoA carboxylase alpha	protein-coding
91599	chr17	5283601	5283800	+	0	NA	intron (NM_001291581, intron 1 of 16)	intron (NM_001291581, intron 1 of 16)	1416	NM_001083585	9135		NM_004703	ENSG00000029725	RABEP1	RAB5EP|RABPT5	rabaptin, RAB GTPase binding effector protein 1	protein-coding
228700	chr9	108953921	108954350	+	0	NA	intron (NM_001286974, intron 12 of 18)	intron (NM_001286974, intron 12 of 18)	19735	NM_017832	54942		NM_017832	ENSG00000119328	ABITRAM	C9orf6|CG-8|FAM206A|Simiate	actin binding transcription modulator	protein-coding
120468	chr19	44725251	44725780	+	0	NA	Intergenic	MIRc|SINE|MIR	-23193	NM_005178	602		NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	BCL3 transcription coactivator	protein-coding
15375	chr1	150150701	150152230	+	0	NA	intron (NM_016274, intron 2 of 5)	intron (NM_016274, intron 2 of 5)	879	NM_001304723	51177		NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding
22027	chr1	210330421	210330680	+	0	NA	intron (NM_001170580, intron 1 of 11).2	intron (NM_001170580, intron 1 of 11).2	1184	NM_001170580	55733		NM_018194	ENSG00000054392	HHAT	MART2|NNMS|SKI1|Skn	hedgehog acyltransferase	protein-coding
80107	chr16	2021721	2021980	+	0	NA	Intergenic	Intergenic	2065	NM_001099456	283869		NM_001099456	ENSG00000183971	NPW	L8|L8C|PPL8|PPNPW	neuropeptide W	protein-coding
222534	chr8	140581101	140581300	+	0	NA	intron (NM_012154, intron 2 of 18)	AluSz|SINE|Alu	54433	NM_001164623	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
18406	chr1	161430051	161430330	+	0	NA	Intergenic	(AC)n|Simple_repeat|Simple_repeat	-62314	NM_001013625	257177		NM_001013625	ENSG00000188931	CFAP126	C1orf192|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding
69255	chr14	93023251	93023550	+	0	NA	intron (NM_014216, intron 3 of 10).2	MLT1I|LTR|ERVL-MaLR	13574	NM_001363707	3705		NM_014216	ENSG00000100605	ITPK1	ITRPK1	inositol-tetrakisphosphate 1-kinase	protein-coding
83012	chr16	22216351	22217050	+	0	NA	intron (NM_013302, intron 1 of 17).2	FLAM_C|SINE|Alu	10422	NM_013302	29904		NM_013302	ENSG00000103319	EEF2K	CaMKIII|HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding
26134	chr10	13786521	13787850	+	0	NA	intron (NM_018027, intron 5 of 24)	intron (NM_018027, intron 5 of 24)	-79618	NM_001318338	55691		NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding
15423	chr1	150263821	150264480	+	0	NA	intron (NM_012113, intron 10 of 10)	AluSx|SINE|Alu	2456	NR_145745	109616989		NR_145745		SNORD13C	-	small nucleolar RNA, C/D box 13C	snoRNA
67328	chr14	69632621	69633080	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	21254	NM_014734	9766		NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
235047	chrX	40100421	40100680	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG-29594	-2592	NM_017745	54880		NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
161015	chr3	37860071	37861050	+	0	NA	intron (NR_110532, intron 1 of 5)	CpG	1220	NR_110532	101928153		NR_110531	ENSG00000235257	ITGA9-AS1	-	ITGA9 antisense RNA 1	ncRNA
105049	chr17	82065381	82066480	+	0	NA	promoter-TSS (NM_022156)	promoter-TSS (NM_022156)	-126	NM_022156	64118		NM_022156	ENSG00000169718	DUS1L	DUS1|PP3111	dihydrouridine synthase 1 like	protein-coding
111548	chr19	4039451	4039850	+	0	NA	TTS (NM_015897)	TTS (NM_015897)	25879	NM_001317990	51341		NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|MNDLFH|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding
139521	chr2	224568171	224568330	+	0	NA	intron (NM_003590, intron 1 of 15)	L2c|LINE|L2	1705	NM_001257198	8452		NM_003590	ENSG00000036257	CUL3	CUL-3|NEDAUS|PHA2E	cullin 3	protein-coding
119573	chr19	40666221	40667080	+	0	NA	3' UTR (NM_001289979, exon 9 of 9)	3' UTR (NM_001289979, exon 9 of 9)	23514	NM_001289980	9253		NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like endocytic adaptor protein	protein-coding
168085	chr3	138199971	138200130	+	0	NA	intron (NM_001363942, intron 2 of 21)	MER20B|DNA|hAT-Charlie	12519	NM_015396	25852		NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding
116770	chr19	18499971	18500600	+	0	NA	intron (NM_006532, intron 1 of 11)	intron (NM_006532, intron 1 of 11)	21785	NM_006532	8178		NM_006532	ENSG00000105656	ELL	C19orf17|ELL1|MEN|PPP1R68	elongation factor for RNA polymerase II	protein-coding
45776	chr11	119270401	119270600	+	0	NA	intron (NM_005188, intron 2 of 15)	AluYa5|SINE|Alu	42512	NR_106814	102465453		NR_106814	ENSG00000284148	MIR6756	hsa-mir-6756	microRNA 6756	ncRNA
105192	chr17	82300501	82301300	+	0	NA	Intergenic	Intergenic	-8086	NR_135639	101929511		NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA
64658	chr14	31551421	31551680	+	0	NA	Intergenic	AluSx1|SINE|Alu	-9854	NM_025152	80224		NM_025152	ENSG00000151413	NUBPL	C14orf127|IND1|MC1DN21|huInd1	NUBP iron-sulfur cluster assembly factor, mitochondrial	protein-coding
55907	chr12	109732301	109732500	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	18575	NM_032829	84915		NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding
44749	chr11	112004471	112004630	+	0	NA	intron (NM_033425, intron 13 of 15)	L1MCc|LINE|L1	-20858	NM_001372040	1737		NM_001931	ENSG00000150768	DLAT	DLTA|E2|PBC|PDC-E2|PDCE2	dihydrolipoamide S-acetyltransferase	protein-coding
164408	chr3	58489851	58490300	+	0	NA	Intergenic	L1M5|LINE|L1	-2021	NM_001128214	200845		NM_153331	ENSG00000168301	KCTD6	KCASH3	potassium channel tetramerization domain containing 6	protein-coding
114353	chr19	12293121	12294200	+	0	NA	intron (NM_001164276, intron 1 of 4)	intron (NM_001164276, intron 1 of 4)	952	NM_001353551	51710		NM_016264	ENSG00000197857	ZNF44	GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58	zinc finger protein 44	protein-coding
113680	chr19	10398571	10398730	+	0	NA	intron (NM_007065, intron 1 of 7)	MIRb|SINE|MIR	4888	NR_031592	100302213		NR_031592	ENSG00000284268	MIR1181	MIRN1181|hsa-mir-1181	microRNA 1181	ncRNA
39995	chr11	62627521	62628050	+	0	NA	intron (NM_198334, intron 17 of 23)	MIR|SINE|MIR	-5799	NM_001288723	26229		NM_012200	ENSG00000149541	B3GAT3	GLCATI|JDSCD|glcUAT-I	beta-1,3-glucuronyltransferase 3	protein-coding
213186	chr7	132472601	132473000	+	0	NA	intron (NM_001105543, intron 3 of 3)	intron (NM_001105543, intron 3 of 3)	103670	NM_001105543	91584		NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding
158124	chr22	50089721	50090350	+	0	NA	promoter-TSS (NM_018995)	promoter-TSS (NM_018995)	29	NM_001164104	54456		NM_018995	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8|SPGF73	Mov10 like RNA helicase 1	protein-coding
205942	chr7	26061621	26062050	+	0	NA	Intergenic	Intergenic	-90363	NM_004289	9603		NM_004289	ENSG00000050344	NFE2L3	NRF3	NFE2 like bZIP transcription factor 3	protein-coding
27864	chr10	41495051	41495150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	872945	NR_024380	441666		NR_024380	ENSG00000291065	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
34507	chr10	132571401	132572450	+	0	NA	intron (NM_005539, intron 1 of 15)	intron (NM_005539, intron 1 of 15)	34138	NM_005539	3632		NM_005539	ENSG00000068383	INPP5A	5PTASE	inositol polyphosphate-5-phosphatase A	protein-coding
125435	chr2	11945151	11945650	+	0	NA	Intergenic	AluJb|SINE|Alu	-61716	NR_110197	100506457		NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA
157058	chr22	42586771	42587100	+	0	NA	intron (NM_001363052, intron 7 of 7)	L2|LINE|L2	-4924	NR_002184	91695		NM_170698	ENSG00000291035	RRP7BP	RRP7B|dJ222E13.2	ribosomal RNA processing 7 homolog B, pseudogene	pseudo
68501	chr14	88168471	88168900	+	0	NA	Intergenic	L1PB4|LINE|L1	102226	NM_138318	54207		NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
196434	chr6	43455101	43456450	+	0	NA	promoter-TSS (NM_001286656)	promoter-TSS (NM_001286656)	-227	NM_001286656	65989		NM_023932	ENSG00000171462	DLK2	DLK-2|EGFL9	delta like non-canonical Notch ligand 2	protein-coding
223907	chr9	458621	458880	+	0	NA	intron (NM_203447, intron 46 of 47)	AluJb|SINE|Alu	-11541	NM_001256876	23189		NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
124033	chr19	55491671	55491830	+	0	NA	intron (NM_001144950, intron 6 of 13)	intron (NM_001144950, intron 6 of 13)	3314	NM_001195267	284297		NM_182571	ENSG00000179954	SSC5D	S5D-SRCRB	scavenger receptor cysteine rich family member with 5 domains	protein-coding
113569	chr19	10258021	10258330	+	0	NA	intron (NM_146387, intron 6 of 9)	intron (NM_146387, intron 6 of 9)	5961	NM_015956	51073		NM_015956	ENSG00000105364	MRPL4	CGI-28|L4mt|uL4m	mitochondrial ribosomal protein L4	protein-coding
39960	chr11	62569001	62569530	+	0	NA	intron (NM_001404, intron 5 of 9)	AluSx|SINE|Alu	-2194	NR_106805	102465447		NR_106805	ENSG00000276102	MIR6747	hsa-mir-6747	microRNA 6747	ncRNA
97153	chr17	42570001	42570200	+	0	NA	exon (NM_198205, exon 6 of 7)	exon (NM_198205, exon 6 of 7)	3000	NM_198204	6945		NM_013383	ENSG00000108788	MLX	MAD7|MXD7|TCFL4|TF4|bHLHd13	MAX dimerization protein MLX	protein-coding
194736	chr6	33858751	33858850	+	0	NA	Intergenic	Intergenic	38107	NR_038989	100507584		NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
174305	chr4	38522701	38523330	+	0	NA	intron (NR_110951, intron 1 of 7)	intron (NR_110951, intron 1 of 7)	165	NR_110951	101928776		NR_110951	ENSG00000249534	LINC01258	-	long intergenic non-protein coding RNA 1258	ncRNA
137936	chr2	201114751	201115100	+	0	NA	Intergenic	L1M4b|LINE|L1	-1179	NM_001127184	8837		NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP	CASP8 and FADD like apoptosis regulator	protein-coding
193256	chr6	29950951	29952200	+	0	NA	Intergenic	Intergenic	9043	NM_002116	3105		NM_002116	ENSG00000206503	HLA-A	HLAA	major histocompatibility complex, class I, A	protein-coding
60210	chr13	40487001	40487200	+	0	NA	Intergenic	MIRb|SINE|MIR	-6094	NR_024507	646982		NR_024505	ENSG00000215483	LINC00598	lncFOXO1	long intergenic non-protein coding RNA 598	ncRNA
215826	chr8	6547471	6547930	+	0	NA	intron (NM_001118887, intron 1 of 8)	intron (NM_001118887, intron 1 of 8)	15545	NM_001118888	285		NM_001147	ENSG00000091879	ANGPT2	AGPT2|ANG2|LMPHM10	angiopoietin 2	protein-coding
14163	chr1	121270851	121270950	+	0	NA	intron (NM_001271872, intron 2 of 9)	AluY|SINE|Alu	85925	NM_001271872	653464		NM_001271872	ENSG00000171943	SRGAP2C	SRGAP2P1	SLIT-ROBO Rho GTPase activating protein 2C	protein-coding
221866	chr8	128322701	128322930	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	172699	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA
76459	chr15	74840901	74841680	+	0	NA	promoter-TSS (NR_106942)	promoter-TSS (NR_106942)	-583	NR_106942	102465531		NR_106942	ENSG00000275411	MIR6882	hsa-mir-6882	microRNA 6882	ncRNA
223657	chr8	144363771	144364130	+	0	NA	Intergenic	Intergenic	5337	NM_001363122	79581		NM_024531	ENSG00000185803	SLC52A2	BVVLS2|D15Ertd747e|GPCR41|GPR172A|HuPAR-1|PAR1|RFT3|RFVT2|hRFT3	solute carrier family 52 member 2	protein-coding
177264	chr4	109435751	109436430	+	0	NA	intron (NM_001318085, intron 1 of 23)	intron (NM_001318085, intron 1 of 23)	-2273	NR_039978	100533182		NR_039978	ENSG00000247950	SEC24B-AS1	1/2-SBSRNA4	SEC24B antisense RNA 1	ncRNA
172586	chr4	2476971	2477130	+	0	NA	intron (NM_001185009, intron 2 of 8)	AluSx|SINE|Alu	7597	NM_001185009	6047		NM_002938	ENSG00000063978	RNF4	RES4-26|SLX5|SNURF	ring finger protein 4	protein-coding
135244	chr2	159706621	159707080	+	0	NA	intron (NR_110586, intron 2 of 2)	MLT2C1|LTR|ERVL	5592	NR_110586	29994		NM_013450	ENSG00000123636	BAZ2B	WALp4	bromodomain adjacent to zinc finger domain 2B	protein-coding
226271	chr9	68280751	68280930	+	0	NA	intron (NM_001378113, intron 10 of 13)	L1PA3|LINE|L1	-22027	NM_199135	286380		NM_199135	ENSG00000187559	FOXD4L3	FOXD4B|FOXD4L2|FOXD4L4|FOXD6	forkhead box D4 like 3	protein-coding
97235	chr17	42844751	42845650	+	0	NA	exon (NM_009590, exon 1 of 4)	exon (NM_009590, exon 1 of 4)	620	NM_001158	314		NM_001158	ENSG00000131480	AOC2	DAO2|RAO|SSAO	amine oxidase copper containing 2	protein-coding
111237	chr19	3515551	3516180	+	0	NA	intron (NM_016263, intron 1 of 13)	intron (NM_016263, intron 1 of 13)	-7091	NM_001136197	51343		NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|DEE109|FZR|FZR2|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding
59407	chr13	25274851	25275150	+	0	NA	intron (NR_169592, intron 1 of 13)	(AC)n|Simple_repeat|Simple_repeat	12488	NM_001385233	9107		NM_004685	ENSG00000139505	MTMR6	-	myotubularin related protein 6	protein-coding
210298	chr7	99455771	99456330	+	0	NA	intron (NM_006693, intron 7 of 7)	intron (NM_006693, intron 7 of 7)	10117	NM_001198879	100526740		NM_001198879	ENSG00000248919	ATP5MF-PTCD1	ATP5J2-PTCD1	ATP5MF-PTCD1 readthrough	protein-coding
70048	chr14	100119901	100120100	+	0	NA	intron (NM_016337, intron 3 of 13)	intron (NM_016337, intron 3 of 13)	10345	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
74771	chr15	63246071	63246230	+	0	NA	intron (NM_016530, intron 2 of 7)	AluSp|SINE|Alu	-31400	NM_001145646	83464		NM_031301	ENSG00000138613	APH1B	APH-1B|PRO1328|PSFL|TAAV688|aph-1beta	aph-1 homolog B, gamma-secretase subunit	protein-coding
193103	chr6	28921821	28922350	+	0	NA	intron (NM_006510, intron 1 of 7)	intron (NM_006510, intron 1 of 7)	1900	NM_006510	5987		NM_006510	ENSG00000204713	TRIM27	RFP|RNF76	tripartite motif containing 27	protein-coding
43996	chr11	94493171	94494700	+	0	NA	promoter-TSS (NM_017704)	promoter-TSS (NM_017704)	-49	NM_017704	54851		NM_017704	ENSG00000168876	ANKRD49	FGIF|GBIF	ankyrin repeat domain 49	protein-coding
235796	chrX	49173921	49174180	+	0	NA	TTS (NM_001307979)	TTS (NM_001307979)	2152	NM_002668	5355		NM_002668	ENSG00000102007	PLP2	A4|A4LSB	proteolipid protein 2	protein-coding
71746	chr15	20755551	20756330	+	0	NA	non-coding (NR_027992, exon 1 of 3)	non-coding (NR_027992, exon 1 of 3)	211	NR_027992	606		NR_027992		NBEAP1	BCL8|BCL8A	neurobeachin pseudogene 1	pseudo
213612	chr7	139424551	139425030	+	0	NA	intron (NR_033999, intron 1 of 2)	AluSq2|SINE|Alu	2736	NR_033999	100129148		NR_033999		LOC100129148	-	uncharacterized LOC100129148	ncRNA
52348	chr12	55072921	55073280	+	0	NA	Intergenic	Intergenic	53126	NM_021191	58158		NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding
198828	chr6	109091101	109091880	+	0	NA	intron (NM_014454, intron 1 of 9)	L2b|LINE|L2	3356	NM_014454	27244		NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding
19892	chr1	183684901	183685330	+	0	NA	intron (NM_015149, intron 1 of 18)	intron (NM_015149, intron 1 of 18)	-31799	NM_203454	403314		NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4	protein-coding
87282	chr16	70025171	70025330	+	0	NA	intron (NR_003610, intron 8 of 25)	AluSx3|SINE|Alu	-5096	NR_036054	100302243		NR_036054	ENSG00000238728	MIR1972-1	MIR1972|hsa-mir-1972|hsa-mir-1972-1	microRNA 1972-1	ncRNA
91000	chr17	2768801	2769230	+	0	NA	Intergenic	AluJr|SINE|Alu	-7743	NM_001330058	23108		NM_015085	ENSG00000132359	RAP1GAP2	GARNL4|RAP1GA3	RAP1 GTPase activating protein 2	protein-coding
119342	chr19	39973171	39973900	+	0	NA	intron (NM_006503, intron 3 of 10)	AluSz6|SINE|Alu	2370	NM_006503	5704		NM_006503	ENSG00000013275	PSMC4	MIP224|RPT3|S6|TBP-7|TBP7	proteasome 26S subunit, ATPase 4	protein-coding
19923	chr1	184399221	184399680	+	0	NA	intron (NM_030806, intron 1 of 5)	AluJb|SINE|Alu	12421	NM_030806	81563		NM_030806	ENSG00000116667	C1orf21	PIG13	chromosome 1 open reading frame 21	protein-coding
149867	chr21	35428301	35428750	+	0	NA	intron (NR_073512, intron 2 of 2)	intron (NR_073512, intron 2 of 2)	152239	NR_073512	100506403		NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
34120	chr10	127848271	127848430	+	0	NA	Intergenic	Intergenic	44591	NM_152311	119467		NM_152311	ENSG00000180745	CLRN3	TMEM12|USH3AL1	clarin 3	protein-coding
38786	chr11	47225321	47225780	+	0	NA	intron (NM_001300734, intron 3 of 5)	AluSx3|SINE|Alu	10576	NM_000107	1643		NM_000107	ENSG00000134574	DDB2	DDBB|UV-DDB2|XPE	damage specific DNA binding protein 2	protein-coding
20340	chr1	197778321	197778850	+	0	NA	Intergenic	AluSz6|SINE|Alu	-3105	NM_001195215	163486		NM_019049	ENSG00000213047	DENND1B	C1ORF18|C1orf218|FAM31B	DENN domain containing 1B	protein-coding
186110	chr5	134134221	134134480	+	0	NA	intron (NM_001366502, intron 1 of 7)	intron (NM_001366502, intron 1 of 7)	10732	NM_001366502	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
137005	chr2	190644651	190645380	+	0	NA	Intergenic	Intergenic	-3880	NM_001321313	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
96604	chr17	40542701	40544250	+	0	NA	Intergenic	Intergenic	16919	NM_001301718	1236		NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding
102737	chr17	76239301	76241680	+	0	NA	promoter-TSS (NM_001330501)	promoter-TSS (NM_001330501)	3	NM_001330501	114804		NM_052916	ENSG00000141576	RNF157	-	ring finger protein 157	protein-coding
232739	chr9	136645921	136646800	+	0	NA	Intergenic	Intergenic	-12496	NR_046367	51162		NM_016215	ENSG00000172889	EGFL7	NEU1|VE-STATIN|ZNEU1	EGF like domain multiple 7	protein-coding
169245	chr3	157151171	157151900	+	0	NA	intron (NM_001308185, intron 5 of 10)	intron (NM_001308185, intron 5 of 10)	8612	NM_020307	57018		NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding
53387	chr12	64689721	64690030	+	0	NA	intron (NM_178169, intron 3 of 4)	AluY|SINE|Alu	-67270	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA
227850	chr9	93520571	93520730	+	0	NA	intron (NM_001286723, intron 7 of 9)	intron (NM_001286723, intron 7 of 9)	-55934	NM_005392	5253		NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding
65237	chr14	49867651	49869080	+	0	NA	Intergenic	CpG	-5516	NR_027260	378706		NR_027260	ENSG00000274012	RN7SL2	7L1C|7L30.1|7SL1c|RNSRP2	RNA component of signal recognition particle 7SL2	scRNA
35108	chr11	647571	648030	+	0	NA	intron (NM_001367390, intron 11 of 11)	intron (NM_001367390, intron 11 of 11)	10531	NM_000797	1815		NM_000797	ENSG00000069696	DRD4	D4DR	dopamine receptor D4	protein-coding
133446	chr2	119641521	119641950	+	0	NA	intron (NM_001271049, intron 21 of 23)	intron (NM_001271049, intron 21 of 23)	-37432	NM_001105198	80775		NM_030577	ENSG00000144120	TMEM177	-	transmembrane protein 177	protein-coding
122048	chr19	48649001	48650250	+	0	NA	intron (NR_004401, intron 1 of 4)	MLT1F1|LTR|ERVL-MaLR	-3438	NR_136241	770		NM_001217	ENSG00000063180	CA11	CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1	carbonic anhydrase 11	protein-coding
75033	chr15	64137121	64137580	+	0	NA	intron (NM_001242933, intron 14 of 14)	intron (NM_001242933, intron 14 of 14)	-14381	NR_073534	79856		NM_024798	ENSG00000157734	SNX22	-	sorting nexin 22	protein-coding
74948	chr15	63790201	63790400	+	0	NA	intron (NM_003922, intron 1 of 77)	AluY|SINE|Alu	43648	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
234367	chrX	15748851	15749200	+	0	NA	intron (NM_007220, intron 1 of 7)	intron (NM_007220, intron 1 of 7)	10755	NM_007220	11238		NM_007220	ENSG00000169239	CA5B	CA-VB|CAVB	carbonic anhydrase 5B	protein-coding
104369	chr17	81005671	81006050	+	0	NA	Intergenic	AluSx|SINE|Alu	14019	NM_024591	79643		NM_024591	ENSG00000176108	CHMP6	VPS20	charged multivesicular body protein 6	protein-coding
126455	chr2	28276101	28276500	+	0	NA	intron (NM_199193, intron 11 of 13)	intron (NM_199193, intron 11 of 13)	34159	NR_038319	100505716		NR_038319	ENSG00000223522	LOC100505716	-	uncharacterized LOC100505716	ncRNA
159736	chr3	15816851	15817300	+	0	NA	intron (NM_001349279, intron 1 of 28)	intron (NM_001349279, intron 1 of 28)	-18891	NR_146111	23243		NM_015199	ENSG00000206560	ANKRD28	CFAP79|FAP79|PITK|PPP1R65	ankyrin repeat domain 28	protein-coding
107316	chr18	45104101	45104700	+	0	NA	Intergenic	Intergenic	-63563	NM_001371319	8170		NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
195454	chr6	36985731	36987180	+	0	NA	promoter-TSS (NR_130739)	promoter-TSS (NR_130739)	96	NM_014341	23787		NM_014341	ENSG00000137409	MTCH1	CGI-64|PIG60|PSAP|SLC25A49	mitochondrial carrier 1	protein-coding
35460	chr11	1463371	1463730	+	0	NA	TTS (NM_003957)	TTS (NM_003957)	17336	NM_053005	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
18534	chr1	162055901	162056290	+	0	NA	Intergenic	Intergenic	-13596	NM_014697	9722		NM_014697	ENSG00000198929	NOS1AP	6330408P19Rik|CAPON|NPHS22	nitric oxide synthase 1 adaptor protein	protein-coding
211034	chr7	102421671	102421830	+	0	NA	intron (NR_038967, intron 8 of 8)	AluSc8|SINE|Alu	-11780	NM_001271818	80228		NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding
230869	chr9	129173771	129174900	+	0	NA	Intergenic	CpG	3926	NM_203434	389792		NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding
100867	chr17	64281801	64282630	+	0	NA	Intergenic	Intergenic	-18955	NM_018469	55852		NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding
117887	chr19	32690101	32690530	+	0	NA	Intergenic	Intergenic	-1646	NM_001105570	390916		NM_001105570	ENSG00000213965	NUDT19	RP2	nudix hydrolase 19	protein-coding
6673	chr1	29135171	29135330	+	0	NA	Intergenic	Intergenic	-11347	NM_001003682	399474		NM_001003682	ENSG00000253304	TMEM200B	TTMB	transmembrane protein 200B	protein-coding
202105	chr6	154737551	154737930	+	0	NA	intron (NM_001286199, intron 2 of 20)	AluSx|SINE|Alu	4324	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
52702	chr12	56524221	56524480	+	0	NA	intron (NM_002898, intron 1 of 13)	intron (NM_002898, intron 1 of 13)	2530	NM_002898	5939		NM_002898	ENSG00000076067	RBMS2	SCR3	RNA binding motif single stranded interacting protein 2	protein-coding
80520	chr16	2758671	2759150	+	0	NA	intron (NM_016333, intron 5 of 14)	intron (NM_016333, intron 5 of 14)	6272	NM_016333	23524		NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|MRD72|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding
103553	chr17	78667521	78668400	+	0	NA	Intergenic	LTR57|LTR|ERVL	-35903	NR_110849	101928710		NR_110848	ENSG00000267123	SCAT1	LINC02081|XLOC_012582	S-phase cancer associated transcript 1	ncRNA
146813	chr20	51326271	51326430	+	0	NA	Intergenic	Intergenic	126627	NR_036162	100422889		NR_036162	ENSG00000266761	MIR3194	mir-3194	microRNA 3194	ncRNA
211301	chr7	103298421	103298680	+	0	NA	intron (NM_004279, intron 1 of 12)	intron (NM_004279, intron 1 of 12)	1115	NM_004279	9512		NM_004279	ENSG00000105819	PMPCB	Beta-MPP|MAS1|MPP11|MPPB|MPPP52|P-52	peptidase, mitochondrial processing subunit beta	protein-coding
221354	chr8	123261371	123261550	+	0	NA	intron (NR_037873, intron 2 of 3)	L2c|LINE|L2	12826	NM_001204180	100533106		NM_001204180	ENSG00000259305	ZHX1-C8orf76	-	ZHX1-C8orf76 readthrough	protein-coding
31809	chr10	98537771	98537930	+	0	NA	intron (NM_001166244, intron 8 of 10)	LTR13A|LTR|ERVK	-90887	NM_001322477	3257		NM_000195	ENSG00000107521	HPS1	BLOC3S1|HPS	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding
35801	chr11	2199721	2199980	+	0	NA	Intergenic	Intergenic	26787	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
69133	chr14	92539571	92540650	+	0	NA	intron (NM_024832, intron 1 of 9)	intron (NM_024832, intron 1 of 9)	26329	NM_024832	79890		NM_024832	ENSG00000100599	RIN3	-	Ras and Rab interactor 3	protein-coding
35495	chr11	1521571	1522180	+	0	NA	Intergenic	Intergenic	-35096	NM_001172223	81532		NM_053005	ENSG00000182208	MOB2	HCCA2	MOB kinase activator 2	protein-coding
27304	chr10	30447071	30447480	+	0	NA	intron (NM_001320961, intron 2 of 7)	intron (NM_001320961, intron 2 of 7)	12629	NM_001320961	1326		NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
230735	chr9	128828301	128828500	+	0	NA	intron (NM_016390, intron 3 of 11)	AluSx|SINE|Alu	1394	NM_016390	51490		NM_016390	ENSG00000198917	SPOUT1	C9orf114|CENP-32|CENP32|HSPC109	SPOUT domain containing methyltransferase 1	protein-coding
36227	chr11	3637421	3637680	+	0	NA	TTS (NR_002720)	TTS (NR_002720)	4442	NM_001297668	116969		NM_053017	ENSG00000167311	ART5	ARTC5	ADP-ribosyltransferase 5	protein-coding
173315	chr4	7448971	7449150	+	0	NA	intron (NM_020777, intron 2 of 26)	(CCTC)n|Simple_repeat|Simple_repeat	-10968	NR_036238	100422826		NR_036238	ENSG00000266690	MIR4274	-	microRNA 4274	ncRNA
141091	chr2	238370571	238371000	+	0	NA	intron (NM_001139490, intron 13 of 14)	intron (NM_001139490, intron 13 of 14)	50241	NM_001139490	26146		NM_015650	ENSG00000204104	TRAF3IP1	CFAP116|FAP116|IFT54|MIP-T3|MIPT3|SLSN9	TRAF3 interacting protein 1	protein-coding
156167	chr22	40213321	40213930	+	0	NA	intron (NM_015088, intron 1 of 20)	L2|LINE|L2	35700	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
121702	chr19	47577321	47577980	+	0	NA	Intergenic	AluSx|SINE|Alu	-4502	NM_001277075	84215		NM_032255	ENSG00000118156	ZNF541	-	zinc finger protein 541	protein-coding
104063	chr17	80193971	80194530	+	0	NA	intron (NM_052819, intron 6 of 9)	L2b|LINE|L2	6450	NM_052819	79092		NM_024110	ENSG00000141527	CARD14	BIMP2|CARMA2|PRP|PSORS2|PSS1	caspase recruitment domain family member 14	protein-coding
105465	chr17	83055151	83055250	+	0	NA	Intergenic	CpG	-3390	NM_001009905	146712		NM_001009905	ENSG00000175711	B3GNTL1	3-Gn-T8|B3GNT8|BGnT-8|QTGAL|beta-1|beta3Gn-T8|beta3GnTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein-coding
171862	chr4	743771	744500	+	0	NA	intron (NM_001317836, intron 8 of 11)	intron (NM_001317836, intron 8 of 11)	37713	NR_036511	100129917		NR_036511	ENSG00000249592	PCGF3-AS1	-	PCGF3 antisense RNA 1	ncRNA
7699	chr1	35944421	35944680	+	0	NA	intron (NM_177422, intron 1 of 16)	AluSz6|SINE|Alu	13445	NM_177422	192669		NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute RISC catalytic component 3	protein-coding
67016	chr14	67513271	67514000	+	0	NA	intron (NM_001348549, intron 1 of 3)	intron (NM_001348549, intron 1 of 3)	1580	NM_001348544	161145		NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
166775	chr3	122420521	122421250	+	0	NA	intron (NR_125405, intron 1 of 2)	AluSz|SINE|Alu	4679	NR_125405	102723582		NR_125405	ENSG00000272758	WDR5B-DT	-	WDR5B divergent transcript	ncRNA
118080	chr19	34361451	34361550	+	0	NA	Intergenic	MIR|SINE|MIR	-3240	NM_001289789	2821		NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding
208581	chr7	72899051	72899350	+	0	NA	intron (NM_172020, intron 2 of 13)	AluSx1|SINE|Alu	8573	NM_172020	9883		NM_014833	ENSG00000196313	POM121	P145|POM121A	POM121 transmembrane nucleoporin	protein-coding
222582	chr8	140637251	140637930	+	0	NA	Intergenic	Intergenic	-1957	NM_012154	27161		NM_012154	ENSG00000123908	AGO2	CASC7|EIF2C2|LESKRES|LINC00980|PPD|Q10	argonaute RISC catalytic component 2	protein-coding
149438	chr21	31444151	31444450	+	0	NA	intron (NM_001353690, intron 1 of 27)	intron (NM_001353690, intron 1 of 27)	-99946	NM_001353687	7074		NM_003253	ENSG00000156299	TIAM1	NEDLDS|TIAM-1	TIAM Rac1 associated GEF 1	protein-coding
150388	chr21	42293501	42294180	+	0	NA	intron (NM_207628, intron 15 of 16)	(CACACTA)n|Simple_repeat|Simple_repeat	21569	NM_003226	7033		NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding
117506	chr19	20037171	20037330	+	0	NA	intron (NM_033196, intron 1 of 3)	intron (NM_033196, intron 1 of 3)	2005	NM_001077349	91120		NM_033196	ENSG00000197124	ZNF682	BC39498_3	zinc finger protein 682	protein-coding
93548	chr17	19065821	19066480	+	0	NA	Intergenic	AluSg|SINE|Alu	-2014	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
180622	chr5	16619901	16620100	+	0	NA	intron (NR_109946, intron 1 of 3)	intron (NR_109946, intron 1 of 3)	-2942	NM_001034850	54463		NM_019000	ENSG00000154153	RETREG1	FAM134B|JK-1|JK1	reticulophagy regulator 1	protein-coding
76417	chr15	74779921	74780600	+	0	NA	Intergenic	Intergenic	-1820	NM_001127190	1445		NM_004383	ENSG00000103653	CSK	-	C-terminal Src kinase	protein-coding
56665	chr12	119988371	119990780	+	0	NA	promoter-TSS (NM_207311)	promoter-TSS (NM_207311)	-269	NM_207311	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
80671	chr16	3023201	3025050	+	0	NA	promoter-TSS (NM_001347704)	promoter-TSS (NM_001347704)	90	NM_001347704	79228		NM_024339	ENSG00000131652	THOC6	MMRFCGU|WDR58|fSAP35	THO complex subunit 6	protein-coding
189811	chr5	176961051	176961350	+	0	NA	intron (NM_001317961, intron 6 of 14)	SVA_F|Retroposon|SVA	45242	NM_016290	51720		NM_016290	ENSG00000087206	UIMC1	RAP80|X2HRIP110	ubiquitin interaction motif containing 1	protein-coding
161154	chr3	39080021	39080280	+	0	NA	intron (NM_001346226, intron 11 of 18)	MER20|DNA|hAT-Charlie	27477	NM_001278790	64689		NM_031899	ENSG00000114745	GORASP1	GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding
219943	chr8	89071751	89071850	+	0	NA	Intergenic	L1PA16|LINE|L1	685911	NR_125822	101929709		NR_125822	ENSG00000251136	PARAIL	RIPK2-DT	palmitic acid regulated anti-inflammatory lncRNA	ncRNA
228057	chr9	96038721	96039180	+	0	NA	3' UTR (NM_001375291, exon 19 of 19)	3' UTR (NM_001375291, exon 19 of 19)	-17139	NR_024129	100188953		NR_024129	ENSG00000225194	LINC00092	NCRNA00092	long intergenic non-protein coding RNA 92	ncRNA
224917	chr9	32569221	32569680	+	0	NA	intron (NM_001199987, intron 1 of 2)	AluSc|SINE|Alu	3709	NM_002493	4712		NM_002493	ENSG00000165264	NDUFB6	B17|CI	NADH:ubiquinone oxidoreductase subunit B6	protein-coding
201836	chr6	150076271	150076800	+	0	NA	Intergenic	L1MEd|LINE|L1	-7414	NM_024518	79465		NM_024518	ENSG00000131019	ULBP3	N2DL-3|NKG2DL3|RAET1N	UL16 binding protein 3	protein-coding
232865	chr9	136804721	136805550	+	0	NA	non-coding (NR_024580, exon 5 of 5)	non-coding (NR_024580, exon 5 of 5)	-2813	NM_024718	55684		NM_017995	ENSG00000196642	RABL6	C9orf86|PARF|RBEL1|pp8875	RAB, member RAS oncogene family like 6	protein-coding
211978	chr7	112939271	112940500	+	0	NA	promoter-TSS (NM_152556)	promoter-TSS (NM_152556)	-10	NM_152556	154743		NM_152556	ENSG00000164603	BMT2	C7orf60|SAMTOR	base methyltransferase of 25S rRNA 2 homolog	protein-coding
130107	chr2	74527121	74527550	+	0	NA	exon (NM_181575, exon 10 of 12)	exon (NM_181575, exon 10 of 12)	-1104	NM_133637	165545		NM_133637	ENSG00000144045	DQX1	-	DEAQ-box RNA dependent ATPase 1	protein-coding
21187	chr1	203803521	203804180	+	0	NA	intron (NM_001376350, intron 2 of 17)	AluJo|SINE|Alu	6327	NM_001174108	100381270		NM_001174108	ENSG00000257315	ZBED6	MGR	zinc finger BED-type containing 6	protein-coding
218337	chr8	42886771	42886930	+	0	NA	intron (NM_001160225, intron 2 of 6)	AluJr|SINE|Alu	9425	NR_039679	100616115		NR_039679	ENSG00000284062	MIR4469	mir-4469	microRNA 4469	ncRNA
189536	chr5	173892501	173893300	+	0	NA	promoter-TSS (NM_001308193)	promoter-TSS (NM_001308193)	-151	NM_001308192	80315		NM_030627	ENSG00000113742	CPEB4	CPE-BP4|hCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
200109	chr6	130200421	130200680	+	0	NA	intron (NM_001258275, intron 7 of 13)	AluSc8|SINE|Alu	15335	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
111010	chr19	3050821	3051650	+	0	NA	intron (NR_031672, intron 2 of 2).3	intron (NR_031672, intron 2 of 2).3	-3600	NM_001144761	7089		NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	TLE family member 2, transcriptional corepressor	protein-coding
151090	chr21	44836971	44837130	+	0	NA	Intergenic	Intergenic	-18921	NM_001286416	6612		NM_006936	ENSG00000184900	SUMO3	SMT3A|SMT3H1|SUMO-3|Smt3B	small ubiquitin like modifier 3	protein-coding
201511	chr6	149061551	149062050	+	0	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-29139	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
3572	chr1	16186201	16186400	+	0	NA	Intergenic	AluY|SINE|Alu	26352	NM_153213	128272		NM_153213	ENSG00000142632	ARHGEF19	WGEF	Rho guanine nucleotide exchange factor 19	protein-coding
56690	chr12	120032401	120032600	+	0	NA	intron (NR_147894, intron 3 of 8)	intron (NR_147894, intron 3 of 8)	42656	NR_147894	92558		NM_207311	ENSG00000135127	BICDL1	BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1	BICD family like cargo adaptor 1	protein-coding
210266	chr7	99404501	99405650	+	0	NA	intron (NM_014891, intron 1 of 5)	intron (NM_014891, intron 1 of 5)	3522	NM_014891	11333		NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding
202564	chr6	158675551	158675850	+	0	NA	intron (NM_001318745, intron 2 of 14)	AluY|SINE|Alu	12297	NM_001318745	94120		NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding
207286	chr7	43992051	43992350	+	0	NA	intron (NR_003655, intron 4 of 15)	AluSx|SINE|Alu	-5668	NM_001378423	285955		NM_175064	ENSG00000136206	SPDYE1	Ringo1|SPDYB2L2|SPDYE|WBSCR19	speedy/RINGO cell cycle regulator family member E1	protein-coding
118201	chr19	35139771	35140150	+	0	NA	intron (NM_001278718, intron 1 of 7)	intron (NM_001278718, intron 1 of 7)	326	NM_001278718	5348		NM_005031	ENSG00000266964	FXYD1	PLM	FXYD domain containing ion transport regulator 1	protein-coding
163418	chr3	50555371	50555530	+	0	NA	Intergenic	Intergenic	12297	NM_016210	51161		NM_016210	ENSG00000088543	C3orf18	G20	chromosome 3 open reading frame 18	protein-coding
128254	chr2	54565801	54566200	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	7606	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
16908	chr1	155877901	155878300	+	0	NA	intron (NM_152280, intron 2 of 3)	AluJb|SINE|Alu	18533	NM_152280	23208		NM_152280	ENSG00000132718	SYT11	SYT12|sytXI	synaptotagmin 11	protein-coding
159113	chr3	12584851	12585750	+	0	NA	intron (NR_148942, intron 14 of 16)	intron (NR_148942, intron 14 of 16)	-24301	NM_001378007	100129480		NM_001195279	ENSG00000225526	MKRN2OS	C3orf83|MKRN2-AS1	MKRN2 opposite strand	protein-coding
119193	chr19	39433621	39434030	+	0	NA	intron (NM_001321111, intron 2 of 4)	intron (NM_001321111, intron 2 of 4)	2124	NM_001321111	6217		NM_001020	ENSG00000105193	RPS16	S16|uS9	ribosomal protein S16	protein-coding
51094	chr12	50023971	50024130	+	0	NA	intron (NM_013277, intron 1 of 18)	AluY|SINE|Alu	1444	NM_001319999	29127		NM_013277	ENSG00000161800	RACGAP1	CDAN3B|CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
100438	chr17	61057351	61057450	+	0	NA	intron (NM_001353144, intron 21 of 25)	MIR3|SINE|MIR	310304	NR_136397	101927855		NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
32642	chr10	103712651	103713300	+	0	NA	intron (NM_014631, intron 5 of 13)	MIRb|SINE|MIR	-33804	NR_038940	100505839		NR_038940	ENSG00000280693	SH3PXD2A-AS1	-	SH3PXD2A antisense RNA 1	ncRNA
105572	chr18	98651	98780	+	0	NA	Intergenic	Intergenic	-10350	NR_033770	727758		NR_033770	ENSG00000290877	ROCK1P1	ROCK1P	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
232601	chr9	136426451	136426750	+	0	NA	Intergenic	AluJr|SINE|Alu	13245	NM_001318502	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
196482	chr6	43586521	43586980	+	0	NA	intron (NM_001291969, intron 2 of 8)	MamRep605|LTR?|LTR?	10565	NM_001291970	5429		NM_006502	ENSG00000170734	POLH	RAD30|RAD30A|XP-V|XPV	DNA polymerase eta	protein-coding
229741	chr9	125119971	125120350	+	0	NA	intron (NM_173690, intron 2 of 18)	MLT1G1|LTR|ERVL-MaLR	23368	NM_173690	286205		NM_173690	ENSG00000173611	SCAI	C9orf126|NET40	suppressor of cancer cell invasion	protein-coding
94897	chr17	31553701	31553900	+	0	NA	Intergenic	HAL1M8|LINE|L1	-6196	NR_029710	406968		NR_029710	ENSG00000207614	MIR193A	MIRN193|MIRN193A|mir-193a	microRNA 193a	ncRNA
131499	chr2	96534551	96534850	+	0	NA	Intergenic	Intergenic	-2052	NM_001319085	10865		NM_006673	ENSG00000196843	ARID5A	MRF-1|MRF1|RP11-363D14	AT-rich interaction domain 5A	protein-coding
235768	chrX	49044771	49044930	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1493	NM_001282142	7030		NM_006521	ENSG00000068323	TFE3	MRXSPF|RCCP2|RCCX1|TFEA|bHLHe33	transcription factor binding to IGHM enhancer 3	protein-coding
201497	chr6	149030901	149031400	+	0	NA	intron (NR_134599, intron 1 of 1)	AluSg|SINE|Alu	1511	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
163685	chr3	52245311	52247330	+	0	NA	intron (NM_001122870, intron 1 of 8)	intron (NM_001122870, intron 1 of 8)	153	NM_001122870	132160		NM_144641	ENSG00000164088	PPM1M	PP2C-eta|PP2CE|PP2Ceta	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein-coding
187921	chr5	148852271	148852430	+	0	NA	Intergenic	Intergenic	25739	NM_000024	154		NM_000024	ENSG00000169252	ADRB2	ADRB2R|ADRBR|ARB2|B2AR|BAR|BETA2AR	adrenoceptor beta 2	protein-coding
42931	chr11	73402451	73403700	+	0	NA	3' UTR (NM_001286051, exon 6 of 6)	3' UTR (NM_001286051, exon 6 of 6)	26407	NM_032871	84957		NM_032871	ENSG00000054967	RELT	AI3C|TNFRSF19L|TRLT	RELT TNF receptor	protein-coding
142452	chr20	3994871	3995630	+	0	NA	intron (NM_001134338, intron 1 of 6)	intron (NM_001134338, intron 1 of 6)	20308	NM_001321749	11237		NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding
154925	chr22	37209301	37209580	+	0	NA	intron (NM_001051, intron 1 of 1)	intron (NM_001051, intron 1 of 1)	1249	NM_001278687	6753		NM_001051	ENSG00000278195	SSTR3	SS-3-R|SS3-R|SS3R|SSR-28|SST3	somatostatin receptor 3	protein-coding
92587	chr17	9242251	9242350	+	0	NA	3' UTR (NM_004822, exon 7 of 7)	3' UTR (NM_004822, exon 7 of 7)	-63182	NR_110828	101928266		NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
232951	chr9	136945701	136945900	+	0	NA	intron (NM_000606, intron 2 of 6)	intron (NM_000606, intron 2 of 6)	557	NM_000606	733		NM_000606	ENSG00000176919	C8G	C8C	complement C8 gamma chain	protein-coding
41422	chr11	66056101	66056380	+	0	NA	intron (NM_006842, intron 5 of 21)	AluSz|SINE|Alu	3096	NR_145738	109616986		NR_145738		SNORD13F	-	small nucleolar RNA, C/D box 13F	snoRNA
50573	chr12	48200001	48201230	+	0	NA	Intergenic	AluSz|SINE|Alu	2677	NM_001004134	121275		NM_001004134	ENSG00000172640	OR10AD1	OR10AD1P|OR12-1	olfactory receptor family 10 subfamily AD member 1	protein-coding
35286	chr11	966371	966830	+	0	NA	intron (NR_144509, intron 2 of 20)	L2a|LINE|L2	40730	NM_012305	161		NM_012305	ENSG00000183020	AP2A2	ADTAB|CLAPA2|HIP-9|HIP9|HYPJ	adaptor related protein complex 2 subunit alpha 2	protein-coding
165344	chr3	88151421	88152430	+	0	NA	intron (NM_173824, intron 1 of 2)	L1ME3E|LINE|L1	1966	NM_173824	285237		NM_173824	ENSG00000179021	C3orf38	-	chromosome 3 open reading frame 38	protein-coding
101206	chr17	65553701	65554200	+	0	NA	intron (NM_004655, intron 2 of 10)	intron (NM_004655, intron 2 of 10)	7698	NM_001363813	8313		NM_004655	ENSG00000168646	AXIN2	AXIL|ODCRCS	axin 2	protein-coding
63361	chr13	114040251	114041080	+	0	NA	intron (NM_001320822, intron 4 of 23).2	CpG	37290	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
229412	chr9	121207451	121207800	+	0	NA	intron (NM_001353053, intron 1 of 25)	intron (NM_001353053, intron 1 of 25)	-5756	NM_016322	51552		NM_016322	ENSG00000119396	RAB14	FBP|RAB-14	RAB14, member RAS oncogene family	protein-coding
98848	chr17	48443571	48443730	+	0	NA	Intergenic	AluSz|SINE|Alu	-1183	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
210784	chr7	100745251	100745800	+	0	NA	intron (NM_173059, intron 7 of 45)	intron (NM_173059, intron 7 of 45)	11930	NR_111918	7455		NM_003386	ENSG00000146839	ZAN	-	zonadhesin	protein-coding
207764	chr7	50148021	50148880	+	0	NA	intron (NM_001161834, intron 7 of 8)	intron (NM_001161834, intron 7 of 8)	52567	NM_001161834	100130988		NM_001161834	ENSG00000164500	SPMIP7	C7orf72|SPATA48	sperm microtubule inner protein 7	protein-coding
136417	chr2	176187051	176187150	+	0	NA	intron (NR_110459, intron 1 of 4)	intron (NR_110459, intron 1 of 4)	1169	NR_110461	401022		NR_033979	ENSG00000224189	HAGLR	HOXD-AS1|MIR7704HG|Mdgt|STEEL	HOXD antisense growth-associated long non-coding RNA	ncRNA
217211	chr8	26395771	26395930	+	0	NA	intron (NM_001330491, intron 3 of 5)	L1PA2|LINE|L1	5437	NM_001330491	665		NM_004331	ENSG00000104765	BNIP3L	BNIP3a|NIP3L|NIX	BCL2 interacting protein 3 like	protein-coding
206419	chr7	32519851	32519950	+	0	NA	intron (NM_015060, intron 1 of 15)	MSTA|LTR|ERVL-MaLR	24411	NM_015060	23080		NM_015060	ENSG00000105778	AVL9	KIAA0241	AVL9 cell migration associated	protein-coding
186363	chr5	134876301	134876750	+	0	NA	intron (NM_024715, intron 1 of 4)	LTR33|LTR|ERVL	2154	NM_024715	79770		NM_024715	ENSG00000113621	TXNDC15	BUG|C5orf14|MKS14|UNQ335	thioredoxin domain containing 15	protein-coding
133479	chr2	119921701	119922100	+	0	NA	intron (NM_002830, intron 12 of 26)	intron (NM_002830, intron 12 of 26)	-91177	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
203477	chr7	518721	519300	+	0	NA	5' UTR (NM_002607, exon 1 of 7)	5' UTR (NM_002607, exon 1 of 7)	834	NM_002607	5154		NM_002607	ENSG00000197461	PDGFA	PDGF-A|PDGF1	platelet derived growth factor subunit A	protein-coding
35073	chr11	611101	611650	+	0	NA	intron (NM_001286582, intron 17 of 17)	intron (NM_001286582, intron 17 of 17)	4575	NM_001572	3665		NM_001572	ENSG00000185507	IRF7	IMD39|IRF-7|IRF-7H|IRF7A|IRF7B|IRF7C|IRF7H	interferon regulatory factor 7	protein-coding
80869	chr16	3577101	3577730	+	0	NA	promoter-TSS (NR_075083)	promoter-TSS (NR_075083)	-12	NR_075083	197358		NM_178844	ENSG00000167984	NLRC3	CLR16.2|NOD3	NLR family CARD domain containing 3	protein-coding
51968	chr12	53936771	53937130	+	0	NA	intron (NR_047507, intron 2 of 2)	intron (NR_047507, intron 2 of 2)	-1881	NM_017410	3229		NM_017410	ENSG00000123364	HOXC13	ECTD9|HOX3|HOX3G	homeobox C13	protein-coding
194262	chr6	32585901	32586800	+	0	NA	intron (NM_002124, intron 1 of 5)	intron (NM_002124, intron 1 of 5)	3486	NM_002124	3123		NM_002124	ENSG00000196126	HLA-DRB1	DRB1|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
113148	chr19	8339571	8339730	+	0	NA	intron (NM_198471, intron 1 of 10)	AluSq|SINE|Alu	3612	NM_198471	256949		NM_198471	ENSG00000186994	KANK3	ANKRD47	KN motif and ankyrin repeat domains 3	protein-coding
98141	chr17	46020001	46021400	+	0	NA	intron (NR_165166, intron 9 of 9)	THE1B|LTR|ERVL-MaLR	21450	NM_001007532	246744		NM_001007532	ENSG00000256762	STH	MAPTIT	saitohin	protein-coding
21389	chr1	205255901	205256780	+	0	NA	promoter-TSS (NM_001331034)	promoter-TSS (NM_001331034)	139	NM_001297613	9911		NM_014858	ENSG00000133069	TMCC2	HUCEP11	transmembrane and coiled-coil domain family 2	protein-coding
112706	chr19	7149051	7149600	+	0	NA	intron (NM_001079817, intron 10 of 20)	intron (NM_001079817, intron 10 of 20)	79622	NM_001044388	79230		NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
25381	chr10	6488701	6488900	+	0	NA	intron (NM_001282644, intron 8 of 17)	AluJo|SINE|Alu	91476	NM_001323266	5588		NM_006257	ENSG00000065675	PRKCQ	PRKCT|nPKC-theta	protein kinase C theta	protein-coding
207663	chr7	45086471	45086950	+	0	NA	intron (NM_001146334, intron 1 of 7)	intron (NM_001146334, intron 1 of 7)	2259	NM_001146334	23148		NM_001146334	ENSG00000136274	NACAD	-	NAC alpha domain containing	protein-coding
210683	chr7	100562551	100563100	+	0	NA	intron (NM_006076, intron 8 of 11)	intron (NM_006076, intron 8 of 11)	11075	NM_001168682	100316904		NM_001168682	ENSG00000205307	SAP25	-	Sin3A associated protein 25	protein-coding
213998	chr7	142873351	142873680	+	0	NA	exon (NM_018646, exon 13 of 15)	exon (NM_018646, exon 13 of 15)	10759	NM_001280795	2051		NM_004445	ENSG00000106123	EPHB6	HEP	EPH receptor B6	protein-coding
136591	chr2	178404421	178404700	+	0	NA	Intergenic	Intergenic	-9099	NR_110205	101927027		NR_110204	ENSG00000223960	CHROMR	CHROME|PRKRA-AS1	cholesterol induced regulator of metabolism RNA	ncRNA
123889	chr19	55322751	55323050	+	0	NA	intron (NR_104066, intron 1 of 6)	intron (NR_104066, intron 1 of 6)	2441	NM_001085488	284417		NM_001085488	ENSG00000180061	TMEM150B	DRAM3|TMEM224|TTN2	transmembrane protein 150B	protein-coding
49570	chr12	26940951	26942980	+	0	NA	intron (NM_001171888, intron 1 of 4)	MIR1_Amn|SINE|MIR	3495	NM_015633	26127		NM_015633	ENSG00000111790	FGFR1OP2	HSPC123-like|WIT3.0	FGFR1 oncogene partner 2	protein-coding
153070	chr22	23305221	23305680	+	0	NA	intron (NM_004327, intron 16 of 22)	intron (NM_004327, intron 16 of 22)	-21166	NR_149133	102724679		NR_149133	ENSG00000236611	LINC02556	-	long intergenic non-protein coding RNA 2556	ncRNA
64484	chr14	24307151	24307250	+	0	NA	3' UTR (NM_001286367, exon 10 of 10)	3' UTR (NM_001286367, exon 10 of 10)	-2940	NM_019839	56413		NM_019839	ENSG00000213906	LTB4R2	BLT2|BLTR2|JULF2|KPG_004|LTB4-R 2|LTB4-R2|NOP9	leukotriene B4 receptor 2	protein-coding
227782	chr9	93126991	93127530	+	0	NA	intron (NM_004148, intron 1 of 3)	intron (NM_004148, intron 1 of 3)	6991	NM_004148	4814		NM_004148	ENSG00000131669	NINJ1	NIN1|NINJURIN|hNINJ1	ninjurin 1	protein-coding
204101	chr7	2122721	2122980	+	0	NA	intron (NM_001304524, intron 9 of 16)	intron (NM_001304524, intron 9 of 16)	-33798	NR_145797	109623488		NR_145797		SNORA114	-	small nucleolar RNA, H/ACA box 114	snoRNA
211586	chr7	105765151	105765430	+	0	NA	intron (NM_152749, intron 3 of 3)	AluSz|SINE|Alu	-86128	NM_138495	222255		NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
69880	chr14	99321081	99321830	+	0	NA	Intergenic	(ACTCAC)n|Simple_repeat|Simple_repeat	-49258	NM_001282238	64919		NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|SMARCM2|ZNF856B|hRIT1-alpha	BCL11 transcription factor B	protein-coding
12633	chr1	109193621	109193980	+	0	NA	intron (NM_020775, intron 14 of 21)	intron (NM_020775, intron 14 of 21)	7251	NM_001284353	57535		NM_020775	ENSG00000116299	ELAPOR1	EIG121|KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein-coding
23124	chr1	226694351	226694980	+	0	NA	intron (NM_002221, intron 2 of 7)	MER20|DNA|hAT-Charlie	-19597	NR_103784	100506443		NR_103784	ENSG00000228382	ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA
218831	chr8	59182701	59183100	+	0	NA	Intergenic	L1MC1|LINE|L1	63690	NR_149031	100505501		NR_149030	ENSG00000167912	TOX-DT	-	TOX divergent transcript	ncRNA
68737	chr14	91001951	91002050	+	0	NA	intron (NM_001322228, intron 1 of 15)	MER103C|DNA|hAT-Charlie	58124	NM_001322238	9252		NM_004755	ENSG00000100784	RPS6KA5	MSK1|MSPK1|RLPK	ribosomal protein S6 kinase A5	protein-coding
77905	chr15	89203071	89203230	+	0	NA	TTS (NM_007011)	TTS (NM_007011)	18429	NM_000326	6017		NM_000326	ENSG00000140522	RLBP1	CRALBP	retinaldehyde binding protein 1	protein-coding
34731	chr10	133674251	133674430	+	0	NA	Intergenic	CpG	-47545	NM_001080998	441581		NM_001080998	ENSG00000225899	FRG2B	-	FSHD region gene 2 family member B	protein-coding
189317	chr5	172147451	172148450	+	0	NA	intron (NM_005990, intron 2 of 18)	MER21A|LTR|ERVL	40274	NM_005990	6793		NM_005990	ENSG00000072786	STK10	LOK|PRO2729	serine/threonine kinase 10	protein-coding
218516	chr8	53654171	53654330	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-130285	NR_149032	100507516		NR_149032	ENSG00000237807	LINC02984	-	long intergenic non-protein coding RNA 2984	ncRNA
54766	chr12	94127271	94127630	+	0	NA	Intergenic	Intergenic	-21127	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
143071	chr20	21520801	21521200	+	0	NA	Intergenic	Intergenic	-6936	NM_002509	4821		NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding
111169	chr19	3345921	3346180	+	0	NA	Intergenic	L2a|LINE|L2	-13580	NM_001245005	4782		NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding
139463	chr2	223943001	223943430	+	0	NA	intron (NM_020830, intron 1 of 11)	intron (NM_020830, intron 1 of 11)	2120	NM_020830	57590		NM_020830	ENSG00000085449	WDFY1	FENS-1|FENS1|WDF1|ZFYVE17	WD repeat and FYVE domain containing 1	protein-coding
11605	chr1	91697221	91698050	+	0	NA	intron (NR_036634, intron 16 of 17)	intron (NR_036634, intron 16 of 17)	188516	NR_036634	7049		NM_003243	ENSG00000069702	TGFBR3	BGCAN|betaglycan	transforming growth factor beta receptor 3	protein-coding
125129	chr2	9839571	9839730	+	0	NA	Intergenic	AluJr|SINE|Alu	-3792	NM_001318977	9014		NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding
97313	chr17	43240681	43242400	+	0	NA	promoter-TSS (NR_002716).3	promoter-TSS (NR_002716).3	-170	NR_002716	6066		NR_002716	ENSG00000274585	RNU2-1	RNU2|U2	RNA, U2 small nuclear 1	snRNA
29980	chr10	73740521	73741030	+	0	NA	Intergenic	Intergenic	-3597	NM_004922	9632		NM_004922	ENSG00000176986	SEC24C	-	SEC24 homolog C, COPII coat complex component	protein-coding
148894	chr21	8463601	8463900	+	0	NA	Intergenic	Intergenic	22604	NR_003287	100008589		NR_003287		RNA28SN5	RN28S1|RNA28S5	RNA, 28S ribosomal N5	rRNA
234861	chrX	25012371	25013500	+	0	NA	exon (NM_139058, exon 2 of 5)	exon (NM_139058, exon 2 of 5)	3030	NM_139058	170302		NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding
3822	chr1	16872151	16872900	+	0	NA	non-coding (NR_160658, exon 1 of 2)	non-coding (NR_160658, exon 1 of 2)	299	NR_160657	112267871		NR_160657	ENSG00000228549	LINC03126	-	long intergenic non-protein coding RNA 3126	ncRNA
115691	chr19	16197271	16198550	+	0	NA	promoter-TSS (NM_032493)	promoter-TSS (NM_032493)	-1	NM_032493	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
155611	chr22	38841951	38842450	+	0	NA	intron (NM_014293, intron 1 of 4)	intron (NM_014293, intron 1 of 4)	1828	NM_014293	23467		NM_014293	ENSG00000221890	NPTXR	NPR	neuronal pentraxin receptor	protein-coding
189084	chr5	170285551	170286030	+	0	NA	intron (NM_005565, intron 3 of 20)	L1MEc|LINE|L1	11987	NM_005565	3937		NM_005565	ENSG00000043462	LCP2	IMD81|SLP-76|SLP76	lymphocyte cytosolic protein 2	protein-coding
213966	chr7	142789501	142789930	+	0	NA	intron (NM_001130026, intron 10 of 10)	intron (NM_001130026, intron 10 of 10)	18745	NM_002770	5645		NM_002770	ENSG00000275896	PRSS2	TRY2|TRY8|TRYP2	serine protease 2	protein-coding
7841	chr1	36320871	36322200	+	0	NA	TTS (NM_001304762)	TTS (NM_001304762)	2110	NM_001304762	55194		NM_018166	ENSG00000142694	EVA1B	C1orf78|FAM176B	eva-1 homolog B	protein-coding
78997	chr15	101965901	101966100	+	0	NA	intron (NR_003659, intron 1 of 10)	intron (NR_003659, intron 1 of 10)	5187	NR_003659	374666		NM_199163		WASH3P	FAM39DP	WASP family homolog 3, pseudogene	pseudo
107537	chr18	48540531	48541380	+	0	NA	intron (NM_001142397, intron 2 of 12)	CpG-12534	1924	NM_001142397	9811		NM_014772	ENSG00000134030	CTIF	Gm672|KIAA0427	cap binding complex dependent translation initiation factor	protein-coding
51324	chr12	51329201	51329400	+	0	NA	intron (NM_001971, intron 7 of 7)	intron (NM_001971, intron 7 of 7)	-4632	NM_001290007	51411		NM_016293	ENSG00000110934	BIN2	BRAP-1	bridging integrator 2	protein-coding
45502	chr11	118657351	118657650	+	0	NA	3' UTR (NM_001301065, exon 14 of 14)	3' UTR (NM_001301065, exon 14 of 14)	13500	NR_106773	102466719		NR_106773	ENSG00000284246	MIR6716	hsa-mir-6716	microRNA 6716	ncRNA
237539	chrX	120450201	120450400	+	0	NA	intron (NM_002294, intron 3 of 8)	intron (NM_002294, intron 3 of 8)	18996	NM_002294	3920		NM_002294	ENSG00000005893	LAMP2	CD107b|DND|LAMP-2|LAMPB|LGP-96|LGP110	lysosomal associated membrane protein 2	protein-coding
10102	chr1	58966171	58966530	+	0	NA	Intergenic	LTR33|LTR|ERVL	-54126	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
49621	chr12	27974151	27974250	+	0	NA	Intergenic	Intergenic	-1467	NM_198965	5744		NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding
211807	chr7	107890601	107892250	+	0	NA	intron (NM_001289751, intron 1 of 12)	CpG	242	NM_000108	1738		NM_000108	ENSG00000091140	DLD	DLDD|DLDH|E3|GCSL|LAD|OGDC-E3|PHE3	dihydrolipoamide dehydrogenase	protein-coding
196995	chr6	53300721	53301550	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	24142	NR_049866	100847075		NR_049866	ENSG00000264056	MIR5685	-	microRNA 5685	ncRNA
13017	chr1	111196471	111196900	+	0	NA	intron (NM_001271833, intron 5 of 11)	intron (NM_001271833, intron 5 of 11)	3961	NM_024901	79961		NM_024901	ENSG00000162777	DENND2D	-	DENN domain containing 2D	protein-coding
8581	chr1	41380171	41380330	+	0	NA	intron (NM_001291281, intron 1 of 2)	MIRb|SINE|MIR	-4581	NR_135817	101929901		NR_135817	ENSG00000229901	FOXO6-AS1	-	FOXO6 antisense RNA 1	ncRNA
180400	chr5	10343801	10344430	+	0	NA	Intergenic	L1MC5a|LINE|L1	-9580	NM_005885	10299		NM_005885	ENSG00000145495	MARCHF6	DOA10|FAME3|FCMTE3|MARCH-VI|MARCH6|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding
125994	chr2	25303271	25303800	+	0	NA	intron (NR_135490, intron 2 of 23)	intron (NR_135490, intron 2 of 23)	25186	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA
145610	chr20	44646171	44647250	+	0	NA	intron (NR_136160, intron 1 of 10)	MIRb|SINE|MIR	4989	NM_000022	100		NM_000022	ENSG00000196839	ADA	ADA1	adenosine deaminase	protein-coding
208306	chr7	66099321	66100630	+	0	NA	Intergenic	Intergenic	-14843	NM_001142414	27297		NM_014478	ENSG00000241258	CRCP	C17|CGRP-RCP|CGRPRCP|POLR3I|POLR3J|RCP|RCP9|RPC9	CGRP receptor component	protein-coding
53189	chr12	61870951	61871250	+	0	NA	intron (NM_178539, intron 1 of 4)	intron (NM_178539, intron 1 of 4)	321739	NM_178539	338811		NM_178539	ENSG00000198673	TAFA2	FAM19A2|TAFA-2	TAFA chemokine like family member 2	protein-coding
100361	chr17	60025051	60025150	+	0	NA	Intergenic	Intergenic	-6048	NR_002924	653645		NR_002924	ENSG00000267104	TBC1D3P1-DHX40P1	DHX40P|DHX40P1|TBC1D3P1	TBC1D3P1-DHX40P1 readthrough, transcribed pseudogene	pseudo
26613	chr10	22333001	22333630	+	0	NA	Intergenic	Intergenic	-12130	NM_001253855	9576		NM_012443	ENSG00000077327	SPAG6	CFAP194|CT141|FAP194|Repro-SA-1|pf16	sperm associated antigen 6	protein-coding
117381	chr19	19589601	19590330	+	0	NA	intron (NM_025245, intron 2 of 7)	intron (NM_025245, intron 2 of 7)	28722	NM_025245	80714		NM_025245	ENSG00000105717	PBX4	-	PBX homeobox 4	protein-coding
37884	chr11	33996921	33997550	+	0	NA	Intergenic	Intergenic	-54496	NM_005898	4076		NM_005898	ENSG00000135387	CAPRIN1	CONDCAC|GPIAP1|GPIP137|GRIP137|M11S1|NEDLAAD|RNG105|p137GPI	cell cycle associated protein 1	protein-coding
73719	chr15	45164171	45164330	+	0	NA	intron (NM_175940, intron 33 of 33)	intron (NM_175940, intron 33 of 33)	16957	NM_001301171	90525		NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding
195040	chr6	35485601	35486000	+	0	NA	intron (NM_003214, intron 2 of 12)	intron (NM_003214, intron 2 of 12)	11279	NM_003214	7005		NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding
47039	chr12	456021	456880	+	0	NA	Intergenic	(ATAGAT)n|Simple_repeat|Simple_repeat	-3489	NM_173593	283358		NM_173593	ENSG00000139044	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein-coding
159360	chr3	13310801	13311450	+	0	NA	Intergenic	AluY|SINE|Alu	-27868	NM_001376938	9922		NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100|IDDSSBA	IQ motif and Sec7 domain ArfGEF 1	protein-coding
38053	chr11	35170201	35171330	+	0	NA	intron (NM_001202557, intron 1 of 8)	intron (NM_001202557, intron 1 of 8)	7815	NR_145794	109623487		NR_145794		SNORD164	-	small nucleolar RNA, C/D box 164	snoRNA
172082	chr4	1039351	1040700	+	0	NA	Intergenic	Intergenic	27561	NM_021923	53834		NM_017862	ENSG00000127418	FGFRL1	FGFR-5|FGFR5|FHFR	fibroblast growth factor receptor like 1	protein-coding
74251	chr15	56958001	56958200	+	0	NA	intron (NM_207038, intron 3 of 19)	L1ME1|LINE|L1	38655	NM_001322164	6938		NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HH26|HTF4|HsT17266|TCF-12|bHLHb20|p64	transcription factor 12	protein-coding
238015	chrX	135021671	135022580	+	0	NA	exon (NM_001078173, exon 1 of 1)	exon (NM_001078173, exon 1 of 1)	417	NM_001078173	441518		NM_001078173	ENSG00000212747	RTL8B	CXX1c|FAM127C|MAR8B|SIRH4	retrotransposon Gag like 8B	protein-coding
234955	chrX	38834251	38834350	+	0	NA	Intergenic	Intergenic	-30417	NR_046706	100874211		NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA
13834	chr1	117633351	117633450	+	0	NA	Intergenic	Intergenic	27352	NM_017709	54855		NM_017709	ENSG00000183508	TENT5C	FAM46C	terminal nucleotidyltransferase 5C	protein-coding
12354	chr1	101233501	101234250	+	0	NA	TTS (NR_104626)	TTS (NR_104626)	2653	NR_104626	101928370		NR_104626		S1PR1-DT	LISPR1	S1PR1 divergent transcript	ncRNA
152921	chr22	22774551	22774850	+	0	NA	Intergenic	Intergenic	-48076	NR_030755	723778		NR_030755	ENSG00000284049	MIR650	MIRN650|hsa-mir-650	microRNA 650	ncRNA
225144	chr9	33742501	33742750	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-4209	NR_109755	101929688		NR_109755	ENSG00000235481	UBE2R2-AS1	LINC01251	UBE2R2 antisense RNA 1	ncRNA
142920	chr20	18413121	18413500	+	0	NA	intron (NR_160273, intron 12 of 13)	MER91B|DNA|hAT-Tip100	34261	NR_034167	440757		NM_001004344	ENSG00000237282	LINC00851	DZANK1-AS1	long intergenic non-protein coding RNA 851	ncRNA
234605	chrX	19800921	19801250	+	0	NA	intron (NM_001353892, intron 2 of 17)	MLT1L|LTR|ERVL-MaLR	-1312	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
186069	chr5	134088221	134088650	+	0	NA	Intergenic	Intergenic	-26246	NM_001346425	6932		NM_003202	ENSG00000081059	TCF7	TCF-1	transcription factor 7	protein-coding
83243	chr16	23874471	23874630	+	0	NA	intron (NM_212535, intron 2 of 16)	intron (NM_212535, intron 2 of 16)	38567	NM_002738	5579		NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2	protein kinase C beta	protein-coding
156239	chr22	40390871	40391030	+	0	NA	intron (NM_001350047, intron 1 of 20)	L2c|LINE|L2	20356	NR_146414	27352		NM_015705	ENSG00000100359	SGSM3	CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP	small G protein signaling modulator 3	protein-coding
231085	chr9	129756871	129757430	+	0	NA	Intergenic	Intergenic	-4108	NM_004878	9536		NM_004878	ENSG00000148344	PTGES	MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1	prostaglandin E synthase	protein-coding
18115	chr1	160709821	160710080	+	0	NA	intron (NM_001256030, intron 1 of 2)	L2b|LINE|L2	1872	NM_001778	962		NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding
178557	chr4	151109021	151109800	+	0	NA	Intergenic	Intergenic	5583	NR_000007	8944		NR_000007	ENSG00000208797	SNORD73A	RNU73|RNU73A|U73|U73a	small nucleolar RNA, C/D box 73A	snoRNA
149361	chr21	29301771	29301930	+	0	NA	intron (NM_206866, intron 1 of 4)	intron (NM_206866, intron 1 of 4)	2475	NM_206866	571		NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding
128311	chr2	54645951	54646250	+	0	NA	intron (NM_178313, intron 21 of 30)	intron (NM_178313, intron 21 of 30)	-78912	NM_001039753	400954		NM_001039753	ENSG00000214595	EML6	-	EMAP like 6	protein-coding
216918	chr8	22713771	22714300	+	0	NA	intron (NM_001363233, intron 6 of 6)	intron (NM_001363233, intron 6 of 6)	-20555	NM_004430	1960		NM_004430	ENSG00000179388	EGR3	EGR-3|PILOT	early growth response 3	protein-coding
133511	chr2	120012651	120013750	+	0	NA	non-coding (NR_138472, exon 1 of 18)	non-coding (NR_138472, exon 1 of 18)	123	NM_001330307	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
102312	chr17	75363371	75363530	+	0	NA	intron (NM_203506, intron 2 of 4)	intron (NM_203506, intron 2 of 4)	42228	NM_002086	2885		NM_002086	ENSG00000177885	GRB2	ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2	growth factor receptor bound protein 2	protein-coding
55977	chr12	110123071	110123230	+	0	NA	Intergenic	L2b|LINE|L2	-1207	NM_031473	28981		NM_014055	ENSG00000122970	IFT81	CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19	intraflagellar transport 81	protein-coding
8752	chr1	42707421	42707830	+	0	NA	Intergenic	AluJr|SINE|Alu	24489	NR_132737	4904		NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding
16162	chr1	153766121	153766380	+	0	NA	intron (NM_001324475, intron 21 of 30).2	AluSx|SINE|Alu	-9157	NR_145826	11000		NM_024330	ENSG00000143554	SLC27A3	ACSVL3|FATP3|VLCS-3	solute carrier family 27 member 3	protein-coding
25689	chr10	8777201	8777800	+	0	NA	Intergenic	Intergenic	-120489	NR_131944	105755953		NR_131944	ENSG00000234752	LINC02676	-	long intergenic non-protein coding RNA 2676	ncRNA
45706	chr11	119081301	119081700	+	0	NA	non-coding (NR_165448, exon 14 of 14)	non-coding (NR_165448, exon 14 of 14)	-3377	NM_001258209	3145		NM_000190	ENSG00000256269	HMBS	ENCEP|LENCEP|PBG-D|PBGD|PORC|UPS	hydroxymethylbilane synthase	protein-coding
21681	chr1	206712301	206712500	+	0	NA	intron (NM_032960, intron 1 of 9)	MIR|SINE|MIR	27495	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
116070	chr19	17234501	17235100	+	0	NA	intron (NM_005234, intron 3 of 3)	AluJb|SINE|Alu	8574	NM_024578	79629		NM_024578	ENSG00000099330	OCEL1	FWP009|S863-9	occludin/ELL domain containing 1	protein-coding
48723	chr12	10703301	10703500	+	0	NA	intron (NM_003651, intron 7 of 9)	intron (NM_003651, intron 7 of 9)	19923	NM_001145426	8531		NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding
206571	chr7	35678121	35678380	+	0	NA	intron (NM_022373, intron 2 of 8)	intron (NM_022373, intron 2 of 8)	16885	NM_022373	64224		NM_022373	ENSG00000122557	HERPUD2	-	HERPUD family member 2	protein-coding
159655	chr3	15333721	15333980	+	0	NA	intron (NM_001018009, intron 1 of 8)	intron (NM_001018009, intron 1 of 8)	-1264	NM_004844	9467		NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
168785	chr3	151890351	151890950	+	0	NA	intron (NR_110203, intron 1 of 2)	intron (NR_110203, intron 1 of 2)	17007	NM_033050	56670		NM_033050	ENSG00000198829	SUCNR1	GPR91	succinate receptor 1	protein-coding
198565	chr6	107027051	107027150	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	-1099	NM_001142470	51250		NM_016487	ENSG00000130349	MTRES1	C6orf203|HSPC230|PRED31	mitochondrial transcription rescue factor 1	protein-coding
67193	chr14	68896101	68896300	+	0	NA	intron (NM_001130004, intron 8 of 21)	intron (NM_001130004, intron 8 of 21)	83102	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
133836	chr2	128089521	128089780	+	0	NA	Intergenic	Intergenic	-1550	NM_020120	56886		NM_020120	ENSG00000136731	UGGT1	HUGT1|UGCGL1|UGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding
114931	chr19	13966071	13966230	+	0	NA	intron (NM_002918, intron 14 of 20)	intron (NM_002918, intron 14 of 20)	-12758	NM_001146255	79883		NM_024825	ENSG00000132000	PODNL1	SLRR5B	podocan like 1	protein-coding
105749	chr18	2753401	2753800	+	0	NA	intron (NM_015295, intron 34 of 47)	AluJb|SINE|Alu	-93406	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
235747	chrX	48949901	48950550	+	0	NA	intron (NM_001136159, intron 1 of 8)	MLT1D|LTR|ERVL-MaLR	7382	NM_017602	55593		NM_017602	ENSG00000068308	OTUD5	DUBA|MCAND	OTU deubiquitinase 5	protein-coding
161715	chr3	43769301	43770430	+	0	NA	Intergenic	Intergenic	-78271	NM_001346469	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
41920	chr11	67285751	67287000	+	0	NA	3' UTR (NM_001619, exon 21 of 21)	3' UTR (NM_001619, exon 21 of 21)	-2928	NM_207354	338692		NM_207354	ENSG00000172932	ANKRD13D	-	ankyrin repeat domain 13D	protein-coding
33882	chr10	124449901	124450580	+	0	NA	promoter-TSS (NM_001146340)	promoter-TSS (NM_001146340)	-205	NM_001146340	390010		NM_001146340	ENSG00000229544	NKX1-2	C10orf121|NKX-1.1|bB238F13.2	NK1 homeobox 2	protein-coding
18476	chr1	161619571	161620050	+	0	NA	Intergenic	AluYe5|SINE|Alu	11237	NM_001271036	2215		NM_000570	ENSG00000162747	FCGR3B	CD16|CD16-I|CD16A|CD16b|FCG3|FCGR3|FCGR3A|FCR-10|FCRIII|FCRIIIb	Fc gamma receptor IIIb	protein-coding
121381	chr19	46868451	46869150	+	0	NA	intron (NM_004491, intron 1 of 6)	(ATTTACA)n|Simple_repeat|Simple_repeat	7803	NM_004491	2909		NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
159905	chr3	16906701	16907630	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	22210	NM_001144382	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
80177	chr16	2122571	2122730	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-10469	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA
15305	chr1	149853101	149854730	+	0	NA	TTS (NM_021059)	TTS (NM_021059)	1307	NM_001005464	333932		NM_001005464	ENSG00000203852	H3C15	H3/n|H3/o|H3C13|H3C14|HIST2H3A	H3 clustered histone 15	protein-coding
227807	chr9	93186401	93186600	+	0	NA	intron (NM_001282394, intron 1 of 29)	intron (NM_001282394, intron 1 of 29)	1570	NM_006648	65268		NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding
6308	chr1	27631221	27632120	+	0	NA	intron (NM_005248, intron 1 of 12)	intron (NM_005248, intron 1 of 12)	3515	NM_005248	2268		NM_005248	ENSG00000000938	FGR	SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr	FGR proto-oncogene, Src family tyrosine kinase	protein-coding
124634	chr2	1750621	1751100	+	0	NA	Intergenic	Intergenic	-6345	NM_012293	7837		NM_012293	ENSG00000130508	PXDN	ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO|hsPxd01	peroxidasin	protein-coding
64819	chr14	35043851	35044150	+	0	NA	promoter-TSS (NM_001079519)	promoter-TSS (NM_001079519)	-907	NM_001079519	283635		NM_173607	ENSG00000151327	FAM177A1	C14orf24	family with sequence similarity 177 member A1	protein-coding
2734	chr1	10664951	10665250	+	0	NA	exon (NM_001079843, exon 5 of 21)	exon (NM_001079843, exon 5 of 21)	131546	NM_001079843	54897		NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding
94698	chr17	30679721	30679980	+	0	NA	Intergenic	Intergenic	-29758	NR_024187	440423		NR_024187		SUZ12P1	SUZ12P	SUZ12 pseudogene 1	pseudo
63669	chr14	21062651	21062750	+	0	NA	intron (NM_001282211, intron 1 of 14)	intron (NM_001282211, intron 1 of 14)	4878	NM_138331	122665		NM_138331	ENSG00000173431	RNASE8	RAE2	ribonuclease A family member 8	protein-coding
198472	chr6	106186071	106186830	+	0	NA	non-coding (NR_104403, exon 5 of 5)	non-coding (NR_104403, exon 5 of 5)	87509	NM_182907	639		NM_001198	ENSG00000057657	PRDM1	BLIMP1|PRDI-BF1	PR/SET domain 1	protein-coding
99260	chr17	49729001	49729650	+	0	NA	intron (NM_030802, intron 2 of 7)	intron (NM_030802, intron 2 of 7)	-21361	NM_005827	10237		NM_005827	ENSG00000121073	SLC35B1	AXER|UGTREL1	solute carrier family 35 member B1	protein-coding
48881	chr12	12483551	12483650	+	0	NA	intron (NM_030640, intron 5 of 6)	MIR|SINE|MIR	79263	NM_030640	80824		NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding
17832	chr1	159905821	159906080	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-5785	NM_012337	25790		NM_012337	ENSG00000213085	CFAP45	CCDC19|HTX11|NESG1	cilia and flagella associated protein 45	protein-coding
194036	chr6	31841071	31842050	+	0	NA	Intergenic	AluSx4|SINE|Alu	4484	NR_002742	26797		NR_002742	ENSG00000201754	SNORD52	RNU52|U52	small nucleolar RNA, C/D box 52	snoRNA
174180	chr4	36317721	36318550	+	0	NA	intron (NM_001378435, intron 7 of 7)	MIR|SINE|MIR	36519	NM_001378435	401124		NM_001136536	ENSG00000197057	DTHD1	-	death domain containing 1	protein-coding
42045	chr11	67453151	67453450	+	0	NA	promoter-TSS (NM_206997)	promoter-TSS (NM_206997)	-571	NM_206997	390212		NM_206997	ENSG00000175514	GPR152	PGR5	G protein-coupled receptor 152	protein-coding
48188	chr12	8028371	8028530	+	0	NA	Intergenic	AluSx4|SINE|Alu	-4266	NM_018416	55810		NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding
124733	chr2	6780821	6781180	+	0	NA	Intergenic	Intergenic	-10689	NR_038369	400941		NM_001001695	ENSG00000205837	LINC00487	-	long intergenic non-protein coding RNA 487	ncRNA
157758	chr22	46684021	46684280	+	0	NA	TTS (NM_022766)	TTS (NM_022766)	54102	NM_022766	64781		NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
68571	chr14	89422171	89422330	+	0	NA	intron (NM_001085471, intron 1 of 6)	MER5A|DNA|hAT-Charlie	4896	NR_036500	400236		NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA
133497	chr2	119943871	119944030	+	0	NA	intron (NM_002830, intron 15 of 26)	MLT1I|LTR|ERVL-MaLR	-69127	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
203499	chr7	607771	608500	+	0	NA	non-coding (NR_110054, exon 2 of 2)	non-coding (NR_110054, exon 2 of 2)	4737	NR_110055	101926963		NR_110054	ENSG00000237181	PRKAR1B-AS1	-	PRKAR1B antisense RNA 1	ncRNA
215175	chr7	155673471	155673830	+	0	NA	intron (NM_053043, intron 3 of 17)	(TA)n|Simple_repeat|Simple_repeat	28989	NM_053043	155435		NM_053043	ENSG00000184863	RBM33	PRR8	RNA binding motif protein 33	protein-coding
34577	chr10	133236651	133237700	+	0	NA	promoter-TSS (NM_014468)	promoter-TSS (NM_014468)	-680	NM_014468	27287		NM_014468	ENSG00000151650	VENTX	HPX42B|NA88A|VENTX2	VENT homeobox	protein-coding
99295	chr17	49792071	49792330	+	0	NA	intron (NM_001199156, intron 2 of 12)	intron (NM_001199156, intron 2 of 12)	3519	NM_001199157	11143		NM_007067	ENSG00000136504	KAT7	HBO1|HBOA|MYST2|ZC2HC7	lysine acetyltransferase 7	protein-coding
81227	chr16	4535551	4536450	+	0	NA	intron (NM_001199055, intron 1 of 5)	intron (NM_001199055, intron 1 of 5)	2429	NM_001199054	29965		NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding
162803	chr3	49108371	49108730	+	0	NA	TTS (NM_006677)	TTS (NM_006677)	-3793	NM_001272073	5859		NM_005051	ENSG00000172053	QARS1	GLNRS|MSCCA|PRO2195|QARS	glutaminyl-tRNA synthetase 1	protein-coding
156148	chr22	40178601	40179650	+	0	NA	intron (NM_015088, intron 1 of 20)	intron (NM_015088, intron 1 of 20)	1200	NM_015088	23112		NM_015088	ENSG00000100354	TNRC6B	GDSBA	trinucleotide repeat containing adaptor 6B	protein-coding
2506	chr1	9696051	9696750	+	0	NA	intron (NM_001350234, intron 2 of 23)	AluJo|SINE|Alu	4933	NM_001350235	5293		NM_005026	ENSG00000171608	PIK3CD	APDS|IMD14|IMD14A|IMD14B|P110DELTA|PI3K|ROCHIS|p110D	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding
123253	chr19	53329001	53329200	+	0	NA	Intergenic	Intergenic	-4619	NM_001321522	91664		NM_138374	ENSG00000213799	ZNF845	-	zinc finger protein 845	protein-coding
82550	chr16	18498401	18498700	+	0	NA	Intergenic	Intergenic	-3974	NR_036145	100423006		NR_036145	ENSG00000266454	MIR3179-3	-	microRNA 3179-3	ncRNA
35962	chr11	2809351	2809650	+	0	NA	intron (NM_181798, intron 15 of 15)	HAL1b|LINE|L1	52069	NR_130721	338653		NR_130721	ENSG00000229414	KCNQ1-AS1	-	KCNQ1 antisense RNA 1	ncRNA
9664	chr1	52683351	52683650	+	0	NA	TTS (NM_023077)	TTS (NM_023077)	14847	NM_023077	65260		NM_023077	ENSG00000162377	COA7	C1orf163|RESA1|SCAN3|SELRC1	cytochrome c oxidase assembly factor 7	protein-coding
205724	chr7	23481121	23481600	+	0	NA	Intergenic	Intergenic	-9028	NR_026676	256355		NR_026676	ENSG00000232818	RPS2P32	RPS2_14_794	ribosomal protein S2 pseudogene 32	pseudo
144144	chr20	34026851	34027150	+	0	NA	intron (NM_016732, intron 1 of 9)	intron (NM_016732, intron 1 of 9)	-22119	NR_039911	100616434		NR_039911	ENSG00000264616	MIR4755	mir-4755	microRNA 4755	ncRNA
181170	chr5	39060001	39060350	+	0	NA	intron (NM_001285439, intron 2 of 38)	Tigger15a|DNA|TcMar-Tigger	14224	NM_152756	253260		NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding
187558	chr5	142783301	142784380	+	0	NA	intron (NM_001349547, intron 1 of 21)	intron (NM_001349547, intron 1 of 21)	12613	NM_001349547	23092		NM_015071	ENSG00000145819	ARHGAP26	GRAF|GRAF1|OPHN1L|OPHN1L1	Rho GTPase activating protein 26	protein-coding
61559	chr13	65296421	65296500	+	0	NA	Intergenic	L1MC1|LINE|L1	-569587	NR_132362	105370242		NR_132362		LINC01052	-	long intergenic non-protein coding RNA 1052	ncRNA
65551	chr14	51931471	51931630	+	0	NA	intron (NM_053064, intron 2 of 3)	L2|LINE|L2	-12979	NR_126331	102723604		NR_126331	ENSG00000258928	LOC102723604	-	uncharacterized LOC102723604	ncRNA
13140	chr1	111670071	111670230	+	0	NA	intron (NM_001370217, intron 1 of 7)	L1MEd|LINE|L1	5356	NM_001370217	5906		NM_002884	ENSG00000116473	RAP1A	C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21	RAP1A, member of RAS oncogene family	protein-coding
68620	chr14	89648621	89648880	+	0	NA	Intergenic	Intergenic	-29585	NM_001085471	1112		NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
202913	chr6	160070801	160071000	+	0	NA	intron (NM_000876, intron 31 of 47)	intron (NM_000876, intron 31 of 47)	-22182	NR_003288	729603		NR_003288		CHP1P2	-	CHP1 pseudogene 2	pseudo
10094	chr1	58922371	58922950	+	0	NA	Intergenic	Intergenic	-97816	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
46077	chr11	122808321	122808780	+	0	NA	intron (NM_032873, intron 13 of 13)	intron (NM_032873, intron 13 of 13)	-29950	NM_019604	56253		NM_019604	ENSG00000109943	CRTAM	CD355	cytotoxic and regulatory T cell molecule	protein-coding
86809	chr16	67844471	67844880	+	0	NA	TTS (NM_020457)	TTS (NM_020457)	-2258	NM_001322038	10204		NM_005796	ENSG00000102898	NUTF2	NTF-2|NTF2|PP15	nuclear transport factor 2	protein-coding
100848	chr17	64129421	64131650	+	0	NA	promoter-TSS (NM_001433)	promoter-TSS (NM_001433)	-391	NM_001433	2081		NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding
58435	chr12	131947321	131947900	+	0	NA	Intergenic	Intergenic	-2332	NM_015409	57634		NM_015409	ENSG00000183495	EP400	CAGH32|P400|TNRC12	E1A binding protein p400	protein-coding
202282	chr6	157107601	157108230	+	0	NA	intron (NM_001371656, intron 7 of 20)	intron (NM_001371656, intron 7 of 20)	71488	NM_001363725	57492		NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R|SMARCF2	AT-rich interaction domain 1B	protein-coding
228281	chr9	98075481	98076750	+	0	NA	intron (NM_018946, intron 2 of 5)	intron (NM_018946, intron 2 of 5)	19383	NM_018946	54187		NM_018946	ENSG00000095380	NANS	HEL-S-100|SAS|SEMDCG|SEMDG	N-acetylneuraminate synthase	protein-coding
232528	chr9	136332771	136332930	+	0	NA	intron (NM_015597, intron 1 of 8)	AluJb|SINE|Alu	5311	NM_001145638	26086		NM_015597	ENSG00000160360	GPSM1	AGS3	G protein signaling modulator 1	protein-coding
177534	chr4	118740971	118741480	+	0	NA	intron (NM_014822, intron 15 of 22)	intron (NM_014822, intron 15 of 22)	55833	NM_020961	57721		NM_020961	ENSG00000145388	METTL14	hMETTL14	methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit	protein-coding
114759	chr19	13597551	13597900	+	0	NA	Intergenic	(ATGG)n|Simple_repeat|Simple_repeat	-91246	NM_023035	773		NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|DEE42|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6	calcium voltage-gated channel subunit alpha1 A	protein-coding
24919	chr10	1067551	1067850	+	0	NA	intron (NM_014023, intron 1 of 13)	L1MDa|LINE|L1	-10996	NM_001317955	3422		NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding
198104	chr6	90292921	90293380	+	0	NA	intron (NM_021813, intron 1 of 8)	MER45A|DNA|hAT-Tip100	3693	NM_021813	60468		NM_021813	ENSG00000112182	BACH2	BTBD25|IMD60	BTB domain and CNC homolog 2	protein-coding
138855	chr2	216636501	216636900	+	0	NA	intron (NM_000597, intron 1 of 3)	intron (NM_000597, intron 1 of 3)	3280	NM_000597	3485		NM_000597	ENSG00000115457	IGFBP2	IBP2|IGF-BP53	insulin like growth factor binding protein 2	protein-coding
77229	chr15	81274771	81275430	+	0	NA	intron (NM_172217, intron 6 of 18)	intron (NM_172217, intron 6 of 18)	-21870	NM_004513	3603		NM_004513	ENSG00000172349	IL16	LCF|NIL16|PRIL16|prIL-16	interleukin 16	protein-coding
234348	chrX	15273421	15273680	+	0	NA	Intergenic	LTR12|LTR|ERV1	-3083	NM_001168531	140462		NM_024087	ENSG00000102048	ASB9	-	ankyrin repeat and SOCS box containing 9	protein-coding
147456	chr20	59011601	59012000	+	0	NA	Intergenic	MER41B|LTR|ERV1	-4546	NM_001336	1522		NM_001336	ENSG00000101160	CTSZ	CTSX	cathepsin Z	protein-coding
164286	chr3	57590301	57591130	+	0	NA	intron (NM_001660, intron 1 of 5)	AluJr|SINE|Alu	6629	NM_001660	378		NM_001660	ENSG00000168374	ARF4	ARF2	ADP ribosylation factor 4	protein-coding
132984	chr2	111496651	111496750	+	0	NA	Intergenic	Intergenic	-1539	NR_136162	541471		NM_001013744	ENSG00000172965	MIR4435-2HG	AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH	MIR4435-2 host gene	ncRNA
122067	chr19	48715301	48715500	+	0	NA	exon (NM_001130915, exon 5 of 10)	exon (NM_001130915, exon 5 of 10)	1557	NM_182574	284358		NM_182574	ENSG00000176909	MAMSTR	MASTR	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
221211	chr8	120810801	120811700	+	0	NA	intron (NM_021021, intron 1 of 6)	CpG	796	NM_021021	6641		NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
47487	chr12	3949471	3949630	+	0	NA	Intergenic	LOR1b|LTR|ERV1	-76102	NM_001286521	57097		NM_020367	ENSG00000111224	PARP11	ARTD11|C12orf6|MIB006	poly(ADP-ribose) polymerase family member 11	protein-coding
37419	chr11	17285501	17286300	+	0	NA	intron (NM_001352668, intron 2 of 13)	intron (NM_001352668, intron 2 of 13)	8930	NM_001352672	4925		NM_005013	ENSG00000070081	NUCB2	HEL-S-109|NEFA	nucleobindin 2	protein-coding
97126	chr17	42535901	42537500	+	0	NA	intron (NM_000263, intron 1 of 5)	CpG	459	NM_000263	4669		NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding
73207	chr15	41558701	41560980	+	0	NA	promoter-TSS (NM_001330264)	promoter-TSS (NM_001330264)	-132	NM_001330264	7301		NM_006293	ENSG00000092445	TYRO3	BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif	TYRO3 protein tyrosine kinase	protein-coding
63003	chr13	112533221	112533950	+	0	NA	intron (NM_001286278, intron 11 of 20)	Charlie4a|DNA|hAT-Charlie	54568	NM_006322	10426		NM_006322	ENSG00000126216	TUBGCP3	104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex component 3	protein-coding
113239	chr19	8490571	8490730	+	0	NA	exon (NM_032152, exon 7 of 10)	exon (NM_032152, exon 7 of 10)	11990	NM_032152	84106		NM_032152	ENSG00000133246	PRAM1	PML-RAR|PRAM-1	PML-RARA regulated adaptor molecule 1	protein-coding
54291	chr12	89345951	89347180	+	0	NA	TTS (NM_001946)	TTS (NM_001946)	5936	NM_022652	1848		NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
228000	chr9	95508901	95509800	+	0	NA	promoter-TSS (NM_001354918)	promoter-TSS (NM_001354918)	-84	NM_000264	5727		NM_000264	ENSG00000185920	PTCH1	BCNS|BCNS1|NBCCS|PTC|PTC1|PTCH	patched 1	protein-coding
108554	chr18	74631401	74632500	+	0	NA	exon (NM_017757, exon 2 of 9)	exon (NM_017757, exon 2 of 9)	987	NM_001146190	55628		NM_017757	ENSG00000215421	ZNF407	SIMHA	zinc finger protein 407	protein-coding
112502	chr19	6466221	6467200	+	0	NA	TTS (NM_001290331)	TTS (NM_001290331)	2439	NM_174881	92359		NM_139161	ENSG00000130545	CRB3	-	crumbs cell polarity complex component 3	protein-coding
190493	chr5	180352671	180353950	+	0	NA	promoter-TSS (NM_005110)	promoter-TSS (NM_005110)	26	NM_005110	9945		NM_005110	ENSG00000131459	GFPT2	GFAT|GFAT 2|GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
15456	chr1	150339021	150339280	+	0	NA	intron (NR_146769, intron 8 of 15)	AluJo|SINE|Alu	17617	NM_004698	9129		NM_004698	ENSG00000117360	PRPF3	HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90	pre-mRNA processing factor 3	protein-coding
141873	chr20	675201	676000	+	0	NA	exon (NM_033129, exon 1 of 2)	exon (NM_033129, exon 1 of 2)	202	NM_033129	85508		NM_033129	ENSG00000215397	SCRT2	ZNF898B	scratch family transcriptional repressor 2	protein-coding
227586	chr9	92381801	92382000	+	0	NA	intron (NM_001286969, intron 4 of 6)	L1MB3|LINE|L1	22678	NM_014057	4969		NM_014057	ENSG00000106809	OGN	OG|OIF|SLRR3A	osteoglycin	protein-coding
89616	chr16	89307571	89307900	+	0	NA	intron (NM_013275, intron 3 of 12)	intron (NM_013275, intron 3 of 12)	11607	NR_136339	105371414		NR_136339	ENSG00000260279	LOC105371414	-	uncharacterized LOC105371414	ncRNA
231553	chr9	131481551	131482250	+	0	NA	intron (NM_001384821, intron 20 of 31)	intron (NM_001384821, intron 20 of 31)	-3765	NR_003050	692093		NR_003050	ENSG00000231587	SNORD62B	U62|U62B	small nucleolar RNA, C/D box 62B	snoRNA
222264	chr8	133285371	133286930	+	0	NA	intron (NM_001374844, intron 1 of 15)	intron (NM_001374844, intron 1 of 15)	10540	NM_001374846	10397		NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
149848	chr21	35047151	35048100	+	0	NA	intron (NM_001754, intron 2 of 8)	intron (NM_001754, intron 2 of 8)	1677	NM_001754	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
125272	chr2	10446321	10446900	+	0	NA	TTS (NR_028374)	TTS (NR_028374)	239	NR_028374	100302743		NR_028374	ENSG00000206633	SNORA80B	ACA67B	small nucleolar RNA, H/ACA box 80B	snoRNA
230656	chr9	128699721	128700180	+	0	NA	Intergenic	AluY|SINE|Alu	-2553	NM_013355	29941		NM_013355	ENSG00000160447	PKN3	UTDP4-1	protein kinase N3	protein-coding
14994	chr1	148080271	148080430	+	0	NA	intron (NR_146087, intron 1 of 7)	L1MCa|LINE|L1	31048	NR_146087	728920		NR_146087		PDE4DIPP1	PDE4DIP1	PDE4DIP pseudogene 1	pseudo
205623	chr7	22501221	22501550	+	0	NA	Intergenic	Intergenic	-1103	NM_207342	256227		NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding
55624	chr12	107027171	107028330	+	0	NA	intron (NM_004075, intron 1 of 12)	intron (NM_004075, intron 1 of 12)	-40584	NM_025198	80298		NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding
130150	chr2	74956851	74957450	+	0	NA	Intergenic	MER39|LTR|ERV1	-1493	NM_019896	56655		NM_019896	ENSG00000115350	POLE4	YHHQ1|p12	DNA polymerase epsilon 4, accessory subunit	protein-coding
211782	chr7	107579901	107580830	+	0	NA	5' UTR (NM_001371354, exon 1 of 8)	5' UTR (NM_001371354, exon 1 of 8)	119	NR_163927	55973		NM_018844	ENSG00000075790	BCAP29	B29|BAP29	B cell receptor associated protein 29	protein-coding
224610	chr9	20408701	20408900	+	0	NA	intron (NM_001286691, intron 5 of 10)	intron (NM_001286691, intron 5 of 10)	2438	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
127169	chr2	38274601	38274880	+	0	NA	Intergenic	Intergenic	101790	NM_001330460	64225		NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding
20019	chr1	185303821	185304850	+	0	NA	intron (NM_006469, intron 8 of 14)	intron (NM_006469, intron 8 of 14)	12908	NM_006469	10625		NM_006469	ENSG00000116679	IVNS1ABP	ARA3|FLARA3|HSPC068|IMD70|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding
49329	chr12	21697821	21698250	+	0	NA	Intergenic	Intergenic	-40180	NM_001315537	3945		NM_002300	ENSG00000111716	LDHB	HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5	lactate dehydrogenase B	protein-coding
54562	chr12	92233421	92233680	+	0	NA	Intergenic	Tigger9b|DNA|TcMar-Tigger	87465	NR_135037	101928617		NR_135036		BTG1-DT	-	BTG1 divergent transcript	ncRNA
124116	chr19	55664651	55664750	+	0	NA	intron (NM_007279, intron 7 of 11)	intron (NM_007279, intron 7 of 11)	9665	NM_001012478	11338		NM_007279	ENSG00000063244	U2AF2	DEVDFB|U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding
201446	chr6	148144971	148145150	+	0	NA	Intergenic	Intergenic	-127268	NM_001346505	23328		NM_015278	ENSG00000111961	SASH1	CAPOK|DUH|DUH1|SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
193915	chr6	31633301	31633880	+	0	NA	promoter-TSS (NR_106890)	promoter-TSS (NR_106890)	-197	NR_106890	102466745		NR_106890	ENSG00000274494	MIR6832	hsa-mir-6832	microRNA 6832	ncRNA
58957	chr13	19817351	19817650	+	0	NA	Intergenic	LTR3B_|LTR|ERVK	-34464	NR_149053	55269		NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding
218712	chr8	58642371	58642550	+	0	NA	intron (NM_003580, intron 2 of 30)	intron (NM_003580, intron 2 of 30)	16947	NM_001144772	8439		NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
230906	chr9	129256501	129256700	+	0	NA	Intergenic	AluJo|SINE|Alu	-25816	NR_121587	101929331		NR_121587		LINC02975	-	long intergenic non-protein coding RNA 2975	ncRNA
138961	chr2	218264171	218264900	+	0	NA	TTS (NM_001321950)	TTS (NM_001321950)	3520	NM_170699	151306		NM_170699	ENSG00000179921	GPBAR1	BG37|GPCR19|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding
27122	chr10	27899451	27899930	+	0	NA	intron (NM_018076, intron 17 of 19)	L1P3|LINE|L1	82181	NM_001290021	55130		NM_018076	ENSG00000169126	ODAD2	ARMC4|CILD23|gudu	outer dynein arm docking complex subunit 2	protein-coding
181723	chr5	50680121	50680930	+	0	NA	intron (NM_024615, intron 2 of 25)	intron (NM_024615, intron 2 of 25)	13111	NM_001331028	79668		NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding
121506	chr19	47179521	47179780	+	0	NA	intron (NM_001145713, intron 6 of 6)	AluJb|SINE|Alu	-47292	NR_036158	100422899		NR_036158	ENSG00000265134	MIR3190	mir-3190	microRNA 3190	ncRNA
64443	chr14	24215301	24216600	+	0	NA	TTS (NM_006156)	TTS (NM_006156)	116	NM_138476	145553		NM_138476	ENSG00000213920	MDP1	FN6PASE|MDP-1	magnesium dependent phosphatase 1	protein-coding
23971	chr1	235166471	235166630	+	0	NA	TTS (NM_001206794)	TTS (NM_001206794)	-5300	NR_144491	23029		NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding
74537	chr15	60488871	60489030	+	0	NA	3' UTR (NM_002943, exon 11 of 11)	3' UTR (NM_002943, exon 11 of 11)	9772	NR_120339	101928784		NR_120339	ENSG00000245534	RORA-AS1	-	RORA antisense RNA 1	ncRNA
213809	chr7	141022971	141023730	+	0	NA	Intergenic	L1PB1|LINE|L1	-8398	NM_053035	51650		NM_016071	ENSG00000090263	MRPS33	CGI-139|MRP-S33|PTD003|S33mt|mS33	mitochondrial ribosomal protein S33	protein-coding
120603	chr19	45024371	45024730	+	0	NA	intron (NM_006509, intron 4 of 10)	intron (NM_006509, intron 4 of 10)	-14495	NM_007056	11129		NM_007056	ENSG00000104859	CLASRP	CLASP|SFRS16|SWAP2	CLK4 associating serine/arginine rich protein	protein-coding
44836	chr11	114073101	114074680	+	0	NA	intron (NM_001354751, intron 2 of 6)	intron (NM_001354751, intron 2 of 6)	10679	NM_001354752	7704		NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
49127	chr12	14885651	14886400	+	0	NA	promoter-TSS (NM_000900)	promoter-TSS (NM_000900)	-171	NM_001190839	4256		NM_000900	ENSG00000111341	MGP	GIG36|MGLAP|NTI	matrix Gla protein	protein-coding
107425	chr18	46200421	46200680	+	0	NA	intron (NM_145055, intron 1 of 4)	AluSg|SINE|Alu	26516	NM_145055	147339		NM_145055	ENSG00000152242	ARK2N	ARKL1|C18orf25|RNF111L1	arkadia (RNF111) N-terminal like PKA signaling regulator 2N	protein-coding
222786	chr8	142028971	142029130	+	0	NA	Intergenic	L1MEc|LINE|L1	-147289	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA
99486	chr17	50186971	50187750	+	0	NA	intron (NM_000088, intron 46 of 50)	intron (NM_000088, intron 46 of 50)	14271	NM_000088	1277		NM_000088	ENSG00000108821	COL1A1	CAFYD|EDSARTH1|EDSC|OI1|OI2|OI3|OI4	collagen type I alpha 1 chain	protein-coding
117702	chr19	28633571	28633930	+	0	NA	intron (NR_110759, intron 5 of 9)	L1PA15-16|LINE|L1	27062	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA
23302	chr1	228070771	228070930	+	0	NA	Intergenic	Intergenic	5700	NR_158166	100506571		NR_158166	ENSG00000276255	LINC02809	-	long intergenic non-protein coding RNA 2809	ncRNA
206820	chr7	37201521	37201830	+	0	NA	intron (NM_014800, intron 13 of 21)	intron (NM_014800, intron 13 of 21)	151993	NM_001206482	9844		NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding
227978	chr9	95316671	95318230	+	0	NA	promoter-TSS (NM_001243743)	promoter-TSS (NM_001243743)	-196	NM_001243743	2176		NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	FA complementation group C	protein-coding
218441	chr8	47951671	47952230	+	0	NA	intron (NM_006904, intron 7 of 85)	L1MB3|LINE|L1	8186	NM_001081640	5591		NM_006904	ENSG00000253729	PRKDC	DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350	protein kinase, DNA-activated, catalytic subunit	protein-coding
185855	chr5	132495401	132497510	+	0	NA	Intergenic	Intergenic	-5682	NM_001354925	3659		NM_002198	ENSG00000125347	IRF1	IMD117|IRF-1|MAR	interferon regulatory factor 1	protein-coding
172633	chr4	2533121	2534000	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1815	NM_001366316	8603		NM_003704	ENSG00000125386	FAM193A	C4orf8|RES4-22	family with sequence similarity 193 member A	protein-coding
22787	chr1	224429701	224429930	+	0	NA	intron (NM_001115113, intron 3 of 13)	intron (NM_001115113, intron 3 of 13)	-4825	NR_136289	149111		NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding
97058	chr17	42364771	42365630	+	0	NA	intron (NM_001369516, intron 1 of 23)	MLT1G|LTR|ERVL-MaLR	23242	NM_001384991	6774		NM_003150	ENSG00000168610	STAT3	ADMIO|ADMIO1|APRF|HIES	signal transducer and activator of transcription 3	protein-coding
164663	chr3	66895621	66896080	+	0	NA	Intergenic	L1PA8|LINE|L1	-102457	NM_032505	84541		NM_032505	ENSG00000163376	KBTBD8	TA-KRP|TAKRP	kelch repeat and BTB domain containing 8	protein-coding
127010	chr2	36909001	36909400	+	0	NA	intron (NM_003162, intron 3 of 17)	intron (NM_003162, intron 3 of 17)	57336	NM_003162	6801		NM_003162	ENSG00000115808	STRN	PPP2R6A|SG2NA|STRN1	striatin	protein-coding
167101	chr3	127588951	127589610	+	0	NA	intron (NM_001353001, intron 1 of 11)	intron (NM_001353001, intron 1 of 11)	1453	NM_001136053	131601		NM_016372	ENSG00000163870	TPRA1	GPR175|TMEM227|TPRA40	transmembrane protein adipocyte associated 1	protein-coding
143893	chr20	32576471	32576830	+	0	NA	intron (NM_001256798, intron 1 of 10)	intron (NM_001256798, intron 1 of 10)	8683	NM_001256798	140688		NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113	nucleolar protein 4 like	protein-coding
120953	chr19	45696471	45696830	+	0	NA	intron (NM_017659, intron 3 of 6)	AluJr|SINE|Alu	3984	NM_017659	54814		NM_017659	ENSG00000011478	QPCTL	gQC	glutaminyl-peptide cyclotransferase like	protein-coding
48206	chr12	8084121	8085000	+	0	NA	intron (NR_024260, intron 1 of 6)	L1PA8A|LINE|L1	2286	NM_015509	25977		NM_015509	ENSG00000089818	NECAP1	DEE21|EIEE21	NECAP endocytosis associated 1	protein-coding
189732	chr5	176547601	176548200	+	0	NA	intron (NM_001171976, intron 1 of 31)	intron (NM_001171976, intron 1 of 31)	-1442	NM_017675	54825		NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLCK|PCLKC	cadherin related family member 2	protein-coding
14068	chr1	120799121	120799480	+	0	NA	Intergenic	Intergenic	-6256	NM_001351372	101060684		NM_001351372	ENSG00000273136	NBPF26	NOTCH2NLR	NBPF member 26	protein-coding
112935	chr19	7692201	7694080	+	0	NA	intron (NM_002002, intron 8 of 10)	intron (NM_002002, intron 8 of 10)	6339	NM_001207019	2208		NM_002002	ENSG00000104921	FCER2	BLAST-2|CD23|CD23A|CLEC4J|FCE2|FCErII|IGEBF	Fc epsilon receptor II	protein-coding
45223	chr11	117928901	117929380	+	0	NA	intron (NM_001206789, intron 1 of 11)	intron (NM_001206789, intron 1 of 11)	262	NM_001206789	84000		NM_032046	ENSG00000137747	TMPRSS13	MSP|MSPL|MSPS|TMPRSS11	transmembrane serine protease 13	protein-coding
50605	chr12	48673601	48674200	+	0	NA	intron (NM_017822, intron 4 of 9)	AluJb|SINE|Alu	-6307	NR_002951	677794		NR_002951	ENSG00000207313	SNORA2B	ACA2b	small nucleolar RNA, H/ACA box 2B	snoRNA
11573	chr1	91523321	91523780	+	0	NA	intron (NM_001134420, intron 11 of 11)	L2b|LINE|L2	22442	NM_001134420	8317		NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding
166466	chr3	114227551	114227650	+	0	NA	Intergenic	Intergenic	9978	NM_007136	7634		NM_007136	ENSG00000174255	ZNF80	pT17	zinc finger protein 80	protein-coding
237728	chrX	126190701	126190900	+	0	NA	Intergenic	L1PA2|LINE|L1	-24511	NM_001013628	340578		NM_001013628	ENSG00000198354	DCAF12L2	WDR40C	DDB1 and CUL4 associated factor 12 like 2	protein-coding
103085	chr17	77327301	77327500	+	0	NA	intron (NM_006640, intron 1 of 10)	intron (NM_006640, intron 1 of 10)	7885	NM_006640	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
23748	chr1	232628671	232628830	+	0	NA	intron (NM_001377488, intron 1 of 21)	intron (NM_001377488, intron 1 of 21)	1383	NM_020808	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
120704	chr19	45175321	45176500	+	0	NA	intron (NM_001270891, intron 1 of 5)	L2a|LINE|L2	2327	NM_024108	79090		NM_024108	ENSG00000007255	TRAPPC6A	TRS33	trafficking protein particle complex subunit 6A	protein-coding
110751	chr19	2340621	2341500	+	0	NA	intron (NM_152988, intron 8 of 14)	intron (NM_152988, intron 8 of 14)	12376	NM_152988	56928		NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding
93306	chr17	18161321	18161580	+	0	NA	intron (NM_016239, intron 56 of 64)	intron (NM_016239, intron 56 of 64)	-22378	NM_017758	54890		NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding
182758	chr5	68290221	68290900	+	0	NA	promoter-TSS (NM_181504)	promoter-TSS (NM_181504)	-104	NM_181504	5295		NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding
170864	chr3	192816301	192816530	+	0	NA	intron (NM_178496, intron 1 of 1)	intron (NM_178496, intron 1 of 1)	-88874	NM_001377293	2257		NM_004113	ENSG00000114279	FGF12	DEE47|EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding
105776	chr18	2807571	2807730	+	0	NA	Intergenic	L1M4b|LINE|L1	-39356	NM_032048	84034		NM_032048	ENSG00000132205	EMILIN2	EMILIN-2|FOAP-10	elastin microfibril interfacer 2	protein-coding
216692	chr8	22163651	22163950	+	0	NA	intron (NM_001385659, intron 6 of 7)	MIRc|SINE|MIR	-1572	NM_001199	649		NM_001199	ENSG00000168487	BMP1	OI13|PCOLC|PCP|PCP2|TLD	bone morphogenetic protein 1	protein-coding
181624	chr5	47323851	47323950	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-1627520	NM_021072	348980		NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|DEE24|EIEE24|GEFSP10|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
29482	chr10	70572321	70572580	+	0	NA	Intergenic	Intergenic	30291	NM_001083116	5551		NM_005041	ENSG00000180644	PRF1	HPLH2|P1|PFP	perforin 1	protein-coding
58612	chr12	132487001	132487800	+	0	NA	Intergenic	Intergenic	-2751	NM_001367871	57666		NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding
192219	chr6	18241471	18241830	+	0	NA	intron (NM_001134709, intron 6 of 9)	intron (NM_001134709, intron 6 of 9)	22880	NM_003472	7913		NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding
160152	chr3	20106321	20106580	+	0	NA	intron (NM_003884, intron 5 of 17)	(AC)n|Simple_repeat|Simple_repeat	-31115	NR_036086	100422901		NR_036086	ENSG00000266745	MIR3135A	MIR3135|hsa-mir-3135a	microRNA 3135a	ncRNA
66185	chr14	60723371	60724530	+	0	NA	exon (NM_017420, exon 1 of 3)	exon (NM_017420, exon 1 of 3)	401	NM_017420	51804		NM_017420	ENSG00000100625	SIX4	AREC3	SIX homeobox 4	protein-coding
194584	chr6	33430401	33431400	+	0	NA	intron (NM_006772, intron 3 of 18).2	intron (NM_006772, intron 3 of 18).2	-7431	NR_049800	100847012		NR_049800	ENSG00000284256	MIR5004	mir-5004	microRNA 5004	ncRNA
10968	chr1	84245601	84245800	+	0	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-52838	NM_001010971	148418		NM_001010971	ENSG00000203943	SAMD13	DJL|HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding
4505	chr1	21671471	21672500	+	0	NA	Intergenic	Intergenic	-2628	NM_001350524	5909		NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding
164764	chr3	69093521	69093780	+	0	NA	intron (NM_006407, intron 1 of 2)	AluSz|SINE|Alu	8713	NM_006407	10550		NM_006407	ENSG00000144746	ARL6IP5	DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx	ADP ribosylation factor like GTPase 6 interacting protein 5	protein-coding
185961	chr5	133054671	133054830	+	0	NA	intron (NM_002154, intron 1 of 18)	intron (NM_002154, intron 1 of 18)	2737	NM_002154	3308		NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding
172734	chr4	2823901	2824700	+	0	NA	intron (NM_001145856, intron 3 of 12)	intron (NM_001145856, intron 3 of 12)	5486	NM_003023	6452		NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding
183190	chr5	75714501	75714700	+	0	NA	intron (NM_001099271, intron 1 of 11)	L2c|LINE|L2	-2145	NM_152408	134359		NM_152408	ENSG00000152359	POC5	C5orf37	POC5 centriolar protein	protein-coding
209121	chr7	74974771	74974930	+	0	NA	intron (NM_001145064, intron 1 of 8)	AluSz6|SINE|Alu	10145	NM_001145064	729438		NM_001145064	ENSG00000274070	CASTOR2	GATSL1|GATSL2	cytosolic arginine sensor for mTORC1 subunit 2	protein-coding
72146	chr15	29050801	29051400	+	0	NA	intron (NM_001353793, intron 2 of 12).2	intron (NM_001353793, intron 2 of 12).2	-19558	NM_001353797	321		NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding
98647	chr17	47820351	47820450	+	0	NA	intron (NM_145798, intron 1 of 22)	intron (NM_145798, intron 1 of 22)	1394	NM_145798	114881		NM_017731	ENSG00000006025	OSBPL7	ORP7	oxysterol binding protein like 7	protein-coding
71542	chr14	106222751	106222850	+	0	NA	Intergenic	Intergenic	-64874	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
166498	chr3	114313351	114313750	+	0	NA	TTS (NM_001348805)	TTS (NM_001348805)	3019	NR_030293	693153		NR_030293	ENSG00000284134	MIR568	MIRN568|hsa-mir-568	microRNA 568	ncRNA
131477	chr2	96483601	96484650	+	0	NA	Intergenic	LTR16B|LTR|ERVL	21232	NM_001285485	93082		NM_001080535	ENSG00000163121	NEURL3	LINCR|RNF132	neuralized E3 ubiquitin protein ligase 3	protein-coding
197130	chr6	57619001	57619200	+	0	NA	intron (NM_000947, intron 12 of 13)	L1PBa|LINE|L1	228968	NR_036097	100422884		NR_036097	ENSG00000212017	MIR548U	-	microRNA 548u	ncRNA
201479	chr6	148829551	148830050	+	0	NA	intron (NM_005715, intron 1 of 7)	intron (NM_005715, intron 1 of 7)	82770	NM_005715	10090		NM_005715	ENSG00000111962	UST	2OST	uronyl 2-sulfotransferase	protein-coding
235592	chrX	47581951	47582730	+	0	NA	promoter-TSS (NM_003254)	promoter-TSS (NM_003254)	-96	NM_003254	7076		NM_003254	ENSG00000102265	TIMP1	CLGI|EPA|EPO|HCI|TIMP|TIMP-1	TIMP metallopeptidase inhibitor 1	protein-coding
178500	chr4	150648121	150648380	+	0	NA	intron (NM_001367550, intron 37 of 56)	intron (NM_001367550, intron 37 of 56)	66099	NM_006439	10586		NM_006439	ENSG00000181541	MAB21L2	MCOPS14|MCSKS14	mab-21 like 2	protein-coding
38318	chr11	44067571	44067930	+	0	NA	exon (NM_032592, exon 2 of 15)	exon (NM_032592, exon 2 of 15)	1480	NM_032592	84680		NM_032592	ENSG00000110455	ACCS	ACS|PHACS	1-aminocyclopropane-1-carboxylate synthase homolog (inactive)	protein-coding
127237	chr2	38668421	38668680	+	0	NA	intron (NM_138801, intron 1 of 6)	L1ME4b|LINE|L1	2436	NM_138801	130589		NM_138801	ENSG00000143891	GALM	BLOCK25|GALAC4|GLAT|HEL-S-63p|IBD1	galactose mutarotase	protein-coding
177086	chr4	108061571	108061730	+	0	NA	intron (NM_001130714, intron 9 of 9)	intron (NM_001130714, intron 9 of 9)	56986	NM_001331027	3033		NM_005327	ENSG00000138796	HADH	HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD	hydroxyacyl-CoA dehydrogenase	protein-coding
30745	chr10	84186601	84187280	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-7597	NM_001171971	92211		NM_033100	ENSG00000148600	CDHR1	CORD15|PCDH21|PRCAD|RP65	cadherin related family member 1	protein-coding
92249	chr17	7929371	7930350	+	0	NA	promoter-TSS (NM_004732)	promoter-TSS (NM_004732)	-425	NM_004732	9196		NM_004732	ENSG00000170049	KCNAB3	AKR6A9|KCNA3.1B|KCNA3B|KV-BETA-3	potassium voltage-gated channel subfamily A regulatory beta subunit 3	protein-coding
4807	chr1	23595821	23596650	+	0	NA	Intergenic	AluJr|SINE|Alu	-31099	NR_167908	259283		NM_148895	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	ncRNA
210032	chr7	94087651	94088100	+	0	NA	Intergenic	Intergenic	-83520	NM_001317739	10282		NM_005868	ENSG00000105829	BET1	HBET1|MDRP	Bet1 golgi vesicular membrane trafficking protein	protein-coding
190215	chr5	178228801	178229630	+	0	NA	intron (NM_153373, intron 3 of 12)	AluSx1|SINE|Alu	3587	NM_153373	85007		NM_153373	ENSG00000175309	PHYKPL	AGXT2L2|PHLU	5-phosphohydroxy-L-lysine phospho-lyase	protein-coding
87966	chr16	80519371	80519750	+	0	NA	intron (NR_120307, intron 2 of 5)	intron (NR_120307, intron 2 of 5)	-21174	NM_001305017	83657		NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein light chain roadblock-type 2	protein-coding
71054	chr14	104802851	104802950	+	0	NA	3' UTR (NM_001137601, exon 1 of 1)	3' UTR (NM_001137601, exon 1 of 1)	1799	NM_001137601	100128927		NM_001137601	ENSG00000179627	ZBTB42	LCCS6|ZNF925	zinc finger and BTB domain containing 42	protein-coding
49099	chr12	14643051	14643630	+	0	NA	intron (NM_004963, intron 17 of 26)	intron (NM_004963, intron 17 of 26)	53259	NM_004963	2984		NM_004963	ENSG00000070019	GUCY2C	DIAR6|GC-C|GCC|GUC2C|HSER|MECIL|MUCIL|STAR	guanylate cyclase 2C	protein-coding
93455	chr17	18694601	18694800	+	0	NA	Intergenic	L1M2c|LINE|L1	-3298	NM_001353221	147166		NM_001037330	ENSG00000291110	TRIM16L	TRIM70	tripartite motif containing 16 like (pseudogene)	pseudo
38582	chr11	46127021	46127700	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-5906	NM_001352032	51317		NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006|IDDBCS|NEDMS	PHD finger protein 21A	protein-coding
142627	chr20	5613901	5614100	+	0	NA	Intergenic	MER30|DNA|hAT-Charlie	-2994	NM_019593	56261		NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding
233206	chr9	137220601	137221100	+	0	NA	exon (NM_031297, exon 1 of 1)	exon (NM_031297, exon 1 of 1)	473	NM_031297	727800		NM_031297	ENSG00000212864	RNF208	-	ring finger protein 208	protein-coding
83284	chr16	24047701	24048100	+	0	NA	intron (NM_212535, intron 5 of 16)	intron (NM_212535, intron 5 of 16)	-155216	NR_106996	102466247		NR_106996	ENSG00000274466	MIR1273H	hsa-mir-1273h	microRNA 1273h	ncRNA
220352	chr8	99537571	99537730	+	0	NA	promoter-TSS (NR_030596)	promoter-TSS (NR_030596)	-789	NR_030596	100126309		NR_030596	ENSG00000216069	MIR875	MIRN875|hsa-mir-875	microRNA 875	ncRNA
152558	chr22	21014021	21015280	+	0	NA	promoter-TSS (NM_001349874)	promoter-TSS (NM_001349874)	-363	NR_003608	113691		NR_003608	ENSG00000284130	TUBA3FP	-	tubulin alpha 3f pseudogene	pseudo
176395	chr4	88817971	88818130	+	0	NA	intron (NM_014883, intron 7 of 23)	AluSz|SINE|Alu	5311	NM_001265578	10144		NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
211850	chr7	110712451	110712780	+	0	NA	intron (NM_001350963, intron 5 of 5)	L1HS|LINE|L1	-378391	NM_001099660	54674		NM_018334	ENSG00000173114	LRRN3	FIGLER5|NLRR-3|NLRR3	leucine rich repeat neuronal 3	protein-coding
63178	chr13	113729251	113729350	+	0	NA	intron (NM_002929, intron 4 of 6)	intron (NM_002929, intron 4 of 6)	21789	NR_028064	100130386		NM_001137672	ENSG00000279770	LINC00552	-	long intergenic non-protein coding RNA 552	ncRNA
43581	chr11	83076151	83076480	+	0	NA	Intergenic	Intergenic	4249	NR_038903	100506233		NR_038903		RAB30-DT	RAB30-AS1	RAB30 divergent transcript	ncRNA
180457	chr5	10638751	10639200	+	0	NA	intron (NM_001164440, intron 3 of 3)	CpG	74905	NM_001164440	651746		NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding
198	chr1	693601	694350	+	0	NA	Intergenic	Intergenic	-7321	NM_001005224	26683		NM_001005224	ENSG00000230178	OR4F3	-	olfactory receptor family 4 subfamily F member 3	protein-coding
173426	chr4	8203151	8203450	+	0	NA	intron (NM_001318480, intron 1 of 17)	intron (NM_001318480, intron 1 of 17)	4010	NM_018986	54436		NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding
76650	chr15	75639261	75641730	+	0	NA	promoter-TSS (NM_018285)	promoter-TSS (NM_018285)	-271	NM_018285	55272		NM_018285	ENSG00000177971	IMP3	BRMS2|C15orf12|MRPS4	IMP U3 small nucleolar ribonucleoprotein 3	protein-coding
113167	chr19	8389351	8390400	+	0	NA	promoter-TSS (NM_004218)	promoter-TSS (NM_004218)	-485	NM_004218	9230		NM_004218	ENSG00000185236	RAB11B	H-YPT3|NDAGSCW	RAB11B, member RAS oncogene family	protein-coding
186228	chr5	134396201	134396400	+	0	NA	Intergenic	Intergenic	15581	NM_080656	91368		NM_080656	ENSG00000237190	CDKN2AIPNL	C2AIL	CDKN2A interacting protein N-terminal like	protein-coding
128817	chr2	62799801	62800000	+	0	NA	intron (NM_001142616, intron 5 of 22)	intron (NM_001142616, intron 5 of 22)	93003	NM_001354217	23301		NM_015252	ENSG00000115504	EHBP1	HPC12|NACSIN	EH domain binding protein 1	protein-coding
159532	chr3	14436471	14436980	+	0	NA	intron (NM_001134367, intron 2 of 14)	intron (NM_001134367, intron 2 of 14)	34119	NM_001134368	6533		NM_003043	ENSG00000131389	SLC6A6	HTRDC|TAUT	solute carrier family 6 member 6	protein-coding
80379	chr16	2535551	2535650	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-2421	NM_031268	5170		NM_002613	ENSG00000140992	PDPK1	PDK1|PDPK2|PDPK2P|PRO0461	3-phosphoinositide dependent protein kinase 1	protein-coding
93937	chr17	21313351	21313930	+	0	NA	intron (NM_145109, intron 11 of 11)	intron (NM_145109, intron 11 of 11)	25604	NM_002756	5606		NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding
10324	chr1	64894451	64894550	+	0	NA	intron (NM_001321852, intron 1 of 24)	AluSx1|SINE|Alu	72049	NM_002227	3716		NM_002227	ENSG00000162434	JAK1	AIIDE|JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding
51102	chr12	50040701	50040900	+	0	NA	Intergenic	Intergenic	-15243	NM_001320004	29127		NM_013277	ENSG00000161800	RACGAP1	CDAN3B|CYK4|HsCYK-4|ID-GAP|MgcRacGAP	Rac GTPase activating protein 1	protein-coding
5695	chr1	26367971	26368130	+	0	NA	intron (NM_173574, intron 2 of 5)	intron (NM_173574, intron 2 of 5)	4700	NM_001114759	257101		NM_173574	ENSG00000176083	ZNF683	Hobit	zinc finger protein 683	protein-coding
90664	chr17	1691101	1691300	+	0	NA	Intergenic	AluY|SINE|Alu	-6333	NM_006445	10594		NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding
227301	chr9	89416221	89416680	+	0	NA	intron (NM_001371201, intron 2 of 18)	intron (NM_001371201, intron 2 of 18)	63440	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
52506	chr12	56041421	56042650	+	0	NA	5' UTR (NM_001029, exon 1 of 4)	5' UTR (NM_001029, exon 1 of 4)	117	NM_001029	6231		NM_001029	ENSG00000197728	RPS26	DBA10|S26|eS26	ribosomal protein S26	protein-coding
217354	chr8	27828851	27829150	+	0	NA	intron (NM_001278945, intron 2 of 7)	L1MEc|LINE|L1	8817	NM_001278945	55872		NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
63871	chr14	21734271	21735030	+	0	NA	Intergenic	Intergenic	-63633	NM_001317107	26687		NM_001317107	ENSG00000276240	OR4E1	OR4E1P	olfactory receptor family 4 subfamily E member 1	protein-coding
151523	chr21	46436871	46437640	+	0	NA	intron (NM_006031, intron 40 of 46)	intron (NM_006031, intron 40 of 46)	-21636	NM_015151	23181		NM_015151	ENSG00000160305	DIP2A	C21orf106|DIP2	disco interacting protein 2 homolog A	protein-coding
110939	chr19	2823821	2824080	+	0	NA	intron (NM_001102651, intron 2 of 4)	MER52C|LTR|ERV1	4082	NM_001102651	115196		NM_152303	ENSG00000172006	ZNF554	-	zinc finger protein 554	protein-coding
69705	chr14	98188271	98188430	+	0	NA	Intergenic	L2c|LINE|L2	-210226	NR_152749	388011		NR_015430	ENSG00000246223	LINC01550	C14orf64	long intergenic non-protein coding RNA 1550	ncRNA
227034	chr9	83961121	83961380	+	0	NA	Intergenic	Intergenic	-4264	NM_001317997	84267		NM_032307	ENSG00000165118	QNG1	C9orf64	Q-nucleotide N-glycosylase 1	protein-coding
88330	chr16	84509601	84510000	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-5141	NM_020947	57707		NM_020947	ENSG00000140950	MEAK7	EAK7|KIAA1609|TLDC1|mEAK-7	MTOR associated protein, eak-7 homolog	protein-coding
150626	chr21	43384701	43385180	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-22591	NR_131902	101928399		NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA
145917	chr20	46004451	46005550	+	0	NA	Intergenic	Intergenic	-3908	NM_004994	4318		NM_004994	ENSG00000100985	MMP9	CLG4B|GELB|MANDP2|MMP-9	matrix metallopeptidase 9	protein-coding
37843	chr11	33696271	33697250	+	0	NA	Intergenic	L2-3_Crp|LINE|L2	3980	NM_001166692	100131378		NM_001166692	ENSG00000205177	C11orf91	-	chromosome 11 open reading frame 91	protein-coding
121887	chr19	48361651	48362130	+	0	NA	intron (NM_001303539, intron 2 of 6)	MIRb|SINE|MIR	2050	NM_001303538	55260		NM_018273	ENSG00000161558	TMEM143	-	transmembrane protein 143	protein-coding
90190	chr17	387221	387580	+	0	NA	Intergenic	Intergenic	-22925	NM_001013672	400566		NM_001013672	ENSG00000187624	LIAT1	C17orf97|CK20	ligand of ATE1	protein-coding
355	chr1	1012651	1014000	+	0	NA	promoter-TSS (NM_005101)	promoter-TSS (NM_005101)	-172	NM_005101	9636		NM_005101	ENSG00000187608	ISG15	G1P2|IFI15|IMD38|IP17|UCRP|hUCRP	ISG15 ubiquitin like modifier	protein-coding
216840	chr8	22594821	22595950	+	0	NA	3' UTR (NM_176871, exon 10 of 10)	3' UTR (NM_176871, exon 10 of 10)	-4214	NM_001013842	541565		NM_173686	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding
193651	chr6	30881251	30881950	+	0	NA	Intergenic	Intergenic	-1013	NM_001297652	780		NM_001954	ENSG00000204580	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding
216375	chr8	17799951	17800250	+	0	NA	intron (NM_001363058, intron 1 of 15)	intron (NM_001363058, intron 1 of 15)	817	NM_001001924	57509		NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1	microtubule associated scaffold protein 1	protein-coding
117445	chr19	19665651	19665830	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2064	NM_020410	57130		NM_020410	ENSG00000105726	ATP13A1	ATP13A|CGI-152	ATPase 13A1	protein-coding
49975	chr12	42099271	42099630	+	0	NA	intron (NM_173601, intron 5 of 7)	intron (NM_173601, intron 5 of 7)	45424	NM_173601	283464		NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
96733	chr17	41678201	41680180	+	0	NA	Intergenic	LTR73|LTR|ERV1	-9695	NM_005801	10209		NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding
62507	chr13	99439851	99440380	+	0	NA	Intergenic	Intergenic	59191	NR_110731	102725509		NR_110731		LINC01232	TCONS_00021520	long intergenic non-protein coding RNA 1232	ncRNA
155348	chr22	38261921	38262530	+	0	NA	intron (NM_001195072, intron 1 of 9)	L1ME3|LINE|L1	10439	NM_001195071	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
63718	chr14	21203371	21203930	+	0	NA	non-coding (NR_038970, exon 1 of 1)	non-coding (NR_038970, exon 1 of 1)	1853	NR_038970	283624		NR_038970	ENSG00000258441	LINC00641	-	long intergenic non-protein coding RNA 641	ncRNA
71445	chr14	105685671	105686030	+	0	NA	Intergenic	Intergenic	-13043	NR_046211	2003		NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ETS transcription factor ELK2A, pseudogene	pseudo
84360	chr16	30221651	30222030	+	0	NA	TTS (NM_001321892)	TTS (NM_001321892)	-14913	NR_002557	613038		NR_002557	ENSG00000290692	LOC613038	-	SAGA complex associated factor 29 pseudogene	pseudo
723	chr1	1437101	1437350	+	0	NA	exon (NM_022834, exon 2 of 3)	exon (NM_022834, exon 2 of 3)	1535	NM_022834	64856		NM_022834	ENSG00000179403	VWA1	HMNMYO|HMNR7|WARP	von Willebrand factor A domain containing 1	protein-coding
93044	chr17	17356001	17356580	+	0	NA	Intergenic	Intergenic	52917	NM_020201	56953		NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding
9913	chr1	54410451	54410550	+	0	NA	Intergenic	Intergenic	-4106	NM_018070	23648		NM_018070	ENSG00000157216	SSBP3	CSDP|SSDP|SSDP1	single stranded DNA binding protein 3	protein-coding
77500	chr15	84637151	84637450	+	0	NA	intron (NR_004859, intron 2 of 4)	intron (NR_004859, intron 2 of 4)	5840	NR_003654	54581		NM_022050		SCAND2P	SCAND2	SCAN domain containing 2 pseudogene	pseudo
90165	chr17	287001	287500	+	0	NA	intron (NM_006987, intron 5 of 9).2	intron (NM_006987, intron 5 of 9).2	-44269	NR_040011	100506388		NR_040011	ENSG00000262061	RPH3AL-AS1	-	RPH3AL antisense RNA 1	ncRNA
193901	chr6	31622471	31623630	+	0	NA	promoter-TSS (NR_002971)	promoter-TSS (NR_002971)	-29	NR_002971	677820		NR_002971	ENSG00000200816	SNORA38	ACA38	small nucleolar RNA, H/ACA box 38	snoRNA
168737	chr3	150830271	150830500	+	0	NA	Intergenic	Intergenic	-67216	NM_005067	6478		NM_005067	ENSG00000181788	SIAH2	hSiah2	siah E3 ubiquitin protein ligase 2	protein-coding
500	chr1	1182621	1183330	+	0	NA	exon (NM_153254, exon 7 of 9)	exon (NM_153254, exon 7 of 9)	3294	NM_153254	254173		NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding
111474	chr19	3949571	3949730	+	0	NA	Intergenic	Intergenic	11862	NR_030367	693222		NR_030367	ENSG00000283928	MIR637	MIRN637|hsa-mir-637	microRNA 637	ncRNA
38485	chr11	45849701	45850400	+	0	NA	intron (NM_021117, intron 1 of 11)	AluJb|SINE|Alu	2575	NM_021117	1408		NM_021117	ENSG00000121671	CRY2	HCRY2|PHLL2	cryptochrome circadian regulator 2	protein-coding
93552	chr17	19068971	19069400	+	0	NA	Intergenic	AluJb|SINE|Alu	-5049	NR_003271	26851		NR_003271		SNORD3B-1	RNU3A1|U3a|U3b1|U3b2	small nucleolar RNA, C/D box 3B-1	snoRNA
178339	chr4	145829671	145830330	+	0	NA	intron (NM_178835, intron 7 of 14)	intron (NM_178835, intron 7 of 14)	108823	NM_001306215	152485		NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding
208421	chr7	66753801	66754200	+	0	NA	intron (NM_001367749, intron 1 of 4)	AluSg|SINE|Alu	-1882	NM_001287061	27342		NM_014504	ENSG00000154710	RABGEF1	RABEX5|RAP1|rabex-5	RAB guanine nucleotide exchange factor 1	protein-coding
222422	chr8	134631521	134631850	+	0	NA	intron (NM_020863, intron 3 of 15)	L1MD1|LINE|L1	33614	NR_002438	594840		NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA
82089	chr16	14307521	14307780	+	0	NA	intron (NR_132983, intron 1 of 1)	intron (NR_132983, intron 1 of 1)	-1635	NR_029854	100126355		NR_029854	ENSG00000199130	MIR365A	MIR365-1|MIRN365-1|hsa-mir-365a|mir-365a	microRNA 365a	ncRNA
84395	chr16	30326471	30326830	+	0	NA	intron (NR_002453, intron 1 of 12)	AluSp|SINE|Alu	8724	NR_002453	595101		NM_001030083	ENSG00000291266	SMG1P5	-	SMG1 pseudogene 5	pseudo
182327	chr5	59041321	59041850	+	0	NA	intron (NM_001349242, intron 7 of 16)	intron (NM_001349242, intron 7 of 16)	-2109	NM_001197221	5144		NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding
8266	chr1	39843271	39843780	+	0	NA	intron (NR_132414, intron 1 of 1)	intron (NR_132414, intron 1 of 1)	39979	NM_017646	54802		NM_017646	ENSG00000043514	TRIT1	COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
28021	chr10	43206721	43207200	+	0	NA	intron (NM_145313, intron 1 of 12)	intron (NM_145313, intron 1 of 12)	22779	NM_001282862	221002		NM_145313	ENSG00000198915	RASGEF1A	CG4853	RasGEF domain family member 1A	protein-coding
191730	chr6	13706651	13706750	+	0	NA	intron (NM_005493, intron 1 of 13)	AluSc|SINE|Alu	5135	NM_005493	10048		NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding
37913	chr11	34149721	34150130	+	0	NA	Intergenic	Intergenic	44296	NM_024662	55226		NM_024662	ENSG00000135372	NAT10	ALP|Kre33|NET43	N-acetyltransferase 10	protein-coding
200934	chr6	139158551	139158950	+	0	NA	intron (NM_016217, intron 1 of 3)	MIR|SINE|MIR	23670	NM_016217	51696		NM_016217	ENSG00000112406	HECA	HDC|HDCL|HHDC|dJ225E12.1	hdc homolog, cell cycle regulator	protein-coding
186002	chr5	133869201	133869430	+	0	NA	Intergenic	Intergenic	-44362	NR_131252	105664404		NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
57140	chr12	121232121	121232850	+	0	NA	exon (NM_001261397, exon 9 of 12)	exon (NM_001261397, exon 9 of 12)	22356	NM_001261398	5025		NM_002560	ENSG00000135124	P2RX4	P2X4|P2X4R	purinergic receptor P2X 4	protein-coding
224860	chr9	30078271	30078580	+	0	NA	Intergenic	Intergenic	330029	NR_046204	401497		NR_046204		LINC01242	-	long intergenic non-protein coding RNA 1242	ncRNA
76926	chr15	78057651	78057950	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	19852	NM_144572	23102		NM_015079	ENSG00000167202	TBC1D2B	NEDSGO	TBC1 domain family member 2B	protein-coding
24413	chr1	243354551	243354930	+	0	NA	intron (NM_001350251, intron 15 of 20).2	intron (NM_001350251, intron 15 of 20).2	8564	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA
237357	chrX	118799571	118799730	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-24174	NM_001312891	170261		NM_173798	ENSG00000174460	ZCCHC12	PNMA7A|SIZN|SIZN1	zinc finger CCHC-type containing 12	protein-coding
142771	chr20	10674021	10674980	+	0	NA	promoter-TSS (NM_000214)	promoter-TSS (NM_000214)	-501	NM_000214	182		NM_000214	ENSG00000101384	JAG1	AGS|AGS1|AHD|AWS|CD339|CMT2HH|DCHE|HJ1|JAGL1	jagged canonical Notch ligand 1	protein-coding
107359	chr18	45931001	45931200	+	0	NA	intron (NM_020964, intron 11 of 43)	intron (NM_020964, intron 11 of 43)	36229	NM_020964	57724		NM_020964	ENSG00000152223	EPG5	HEEW1|KIAA1632|VICIS	ectopic P-granules 5 autophagy tethering factor	protein-coding
51598	chr12	52741471	52741700	+	0	NA	Intergenic	Intergenic	35760	NM_015848	51350		NM_015848	ENSG00000185069	KRT76	HUMCYT2A|KRT2B|KRT2P	keratin 76	protein-coding
182243	chr5	57171571	57172800	+	0	NA	Intergenic	Intergenic	-1763	NM_001203246	65056		NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding
148027	chr20	63172651	63173330	+	0	NA	Intergenic	Intergenic	-5510	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA
113006	chr19	7909651	7910100	+	0	NA	exon (NM_001297555, exon 3 of 12)	exon (NM_001297555, exon 3 of 12)	-4955	NM_001195259	100507588		NM_001195259	ENSG00000260001	TGFBR3L	GEMP|TGFR-3L	transforming growth factor beta receptor 3 like	protein-coding
152770	chr22	21778901	21779500	+	0	NA	intron (NM_138957, intron 6 of 7)	L1ME4a|LINE|L1	-43406	NR_130910	29799		NM_013313	ENSG00000100027	YPEL1	FKSG3	yippee like 1	protein-coding
199068	chr6	111642271	111642730	+	0	NA	Intergenic	MIR|SINE|MIR	-36226	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
549	chr1	1242701	1243300	+	0	NA	intron (NM_001014980, intron 6 of 7)	intron (NM_001014980, intron 6 of 7)	3722	NM_001014980	388581		NM_001014980	ENSG00000184163	C1QTNF12	C1QDC2|CTRP12|FAM132A	C1q and TNF related 12	protein-coding
133164	chr2	112754321	112754900	+	0	NA	intron (NM_001304361, intron 4 of 8)	L2b|LINE|L2	9999	NM_152515	150468		NM_152515	ENSG00000169607	CKAP2L	-	cytoskeleton associated protein 2 like	protein-coding
221205	chr8	120785871	120786430	+	0	NA	intron (NM_021021, intron 1 of 6)	L1PBa|LINE|L1	24897	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
196522	chr6	43774151	43774250	+	0	NA	intron (NM_001287044, intron 1 of 6)	intron (NM_001287044, intron 1 of 6)	2232	NM_001287044	7422		NM_003376	ENSG00000112715	VEGFA	L-VEGF|MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding
184547	chr5	102754121	102754500	+	0	NA	promoter-TSS (NM_001364587)	promoter-TSS (NM_001364587)	-473	NM_001319943	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
1114	chr1	2056021	2056300	+	0	NA	intron (NM_002744, intron 2 of 17)	intron (NM_002744, intron 2 of 17)	5749	NM_002744	5590		NM_002744	ENSG00000067606	PRKCZ	PKC-ZETA|PKC2	protein kinase C zeta	protein-coding
32658	chr10	103805151	103805450	+	0	NA	intron (NM_014631, intron 1 of 13)	intron (NM_014631, intron 1 of 13)	50106	NM_014631	9644		NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding
161639	chr3	43300901	43301730	+	0	NA	intron (NM_017719, intron 2 of 6)	intron (NM_017719, intron 2 of 6)	14775	NM_017719	54861		NM_017719	ENSG00000163788	SNRK	HSNFRK	SNF related kinase	protein-coding
27754	chr10	35200451	35200750	+	0	NA	intron (NM_001352446, intron 1 of 2)	intron (NM_001352446, intron 1 of 2)	4698	NM_182724	1390		NM_001881	ENSG00000095794	CREM	CREM-2|ICER|hCREM-2	cAMP responsive element modulator	protein-coding
23556	chr1	229327801	229328550	+	0	NA	intron (NM_145257, intron 2 of 3)	intron (NM_145257, intron 2 of 3)	14872	NM_145257	126731		NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding
35796	chr11	2194751	2195680	+	0	NA	Intergenic	Intergenic	22152	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA
130232	chr2	84828851	84828950	+	0	NA	intron (NM_001080824, intron 4 of 5)	intron (NM_001080824, intron 4 of 5)	52184	NM_001277053	129293		NM_001080824	ENSG00000186854	TRABD2A	C2orf89|TIKI1	TraB domain containing 2A	protein-coding
182570	chr5	65940851	65940950	+	0	NA	intron (NM_001253697, intron 1 of 25)	SVA_D|Retroposon|SVA	4673	NR_028474	100303749		NR_028474		LOC100303749	-	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene	pseudo
163930	chr3	52692171	52692680	+	0	NA	promoter-TSS (NR_003057)	promoter-TSS (NR_003057)	-311	NR_003057	692109		NR_003057	ENSG00000212452	SNORD69	HBII-210	small nucleolar RNA, C/D box 69	snoRNA
107053	chr18	32157651	32158700	+	0	NA	Intergenic	Intergenic	-31864	NM_001308171	4225		NM_005925	ENSG00000141434	MEP1B	-	meprin A subunit beta	protein-coding
194209	chr6	32183901	32184500	+	0	NA	promoter-TSS (NM_001206936)	promoter-TSS (NM_001206936)	53	NR_038190	177		NM_001136	ENSG00000204305	AGER	RAGE|SCARJ1|sRAGE	advanced glycosylation end-product specific receptor	protein-coding
53832	chr12	69470101	69471250	+	0	NA	intron (NM_001278357, intron 1 of 6)	CpG	287	NM_001042555	10818		NM_006654	ENSG00000166225	FRS2	FRS1A|FRS2A|FRS2alpha|SNT|SNT-1|SNT1	fibroblast growth factor receptor substrate 2	protein-coding
52352	chr12	55344821	55344900	+	0	NA	Intergenic	L1PA2|LINE|L1	13159	NM_054104	254786		NM_054104	ENSG00000205329	OR6C3	OST709	olfactory receptor family 6 subfamily C member 3	protein-coding
126590	chr2	28768151	28768650	+	0	NA	intron (NM_206876, intron 2 of 8)	L1ME3|LINE|L1	16570	NM_002709	5500		NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|MP|NSLH2|PP-1B|PP1B|PP1beta|PP1c|PPP1CD|PPP1beta	protein phosphatase 1 catalytic subunit beta	protein-coding
100910	chr17	64458751	64459050	+	0	NA	intron (NM_001085423, intron 4 of 9)	MER115|DNA|hAT-Tip100	9785	NM_001291317	284021		NM_001085423	ENSG00000271605	MILR1	Allergin-1|C17orf60|MCA-32|MCA32	mast cell immunoglobulin like receptor 1	protein-coding
231128	chr9	129837771	129838130	+	0	NA	intron (NM_001008563, intron 1 of 25)	intron (NM_001008563, intron 1 of 25)	2492	NM_001110303	10868		NM_006676	ENSG00000136878	USP20	LSFR3A|VDU2|hVDU2	ubiquitin specific peptidase 20	protein-coding
176672	chr4	100190021	100191100	+	0	NA	promoter-TSS (NM_145244)	promoter-TSS (NM_145244)	-92	NM_145244	115265		NM_145244	ENSG00000145358	DDIT4L	REDD2|Rtp801L	DNA damage inducible transcript 4 like	protein-coding
70544	chr14	102523601	102525100	+	0	NA	Intergenic	Intergenic	-14574	NM_001348652	122416		NM_152326	ENSG00000156381	ANKRD9	-	ankyrin repeat domain 9	protein-coding
129793	chr2	71333351	71333930	+	0	NA	intron (NM_014497, intron 1 of 27)	MIRb|SINE|MIR	1858	NM_014497	27332		NM_014497	ENSG00000075292	ZNF638	NP220|ZFML|Zfp638	zinc finger protein 638	protein-coding
200078	chr6	130134421	130135100	+	0	NA	intron (NM_001007102, intron 21 of 21)	intron (NM_001007102, intron 21 of 21)	81125	NM_001277185	154075		NM_152552	ENSG00000164483	SAMD3	-	sterile alpha motif domain containing 3	protein-coding
147820	chr20	62711021	62711630	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	2489	NM_002531	4923		NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding
154747	chr22	36483501	36484350	+	0	NA	Intergenic	Intergenic	-2285	NM_012473	25828		NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2|TXN	thioredoxin 2	protein-coding
219141	chr8	66123921	66124300	+	0	NA	Intergenic	L2c|LINE|L2	-3019	NM_184086	84675		NM_033058	ENSG00000147573	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
66684	chr14	63992751	63992850	+	0	NA	intron (NM_015180, intron 21 of 114)	intron (NM_015180, intron 21 of 114)	102325	NR_031677	100313830		NR_031677	ENSG00000221537	MIR548H1	MIR548H-1|MIRN548H1	microRNA 548h-1	ncRNA
157821	chr22	47177401	47177600	+	0	NA	Intergenic	Intergenic	-168071	NR_144462	339685		NR_038922	ENSG00000224715	LOC339685	-	uncharacterized LOC339685	ncRNA
148249	chr20	63649121	63649780	+	0	NA	intron (NR_075070, intron 1 of 4)	intron (NR_075070, intron 1 of 4)	3316	NM_001276310	50861		NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding
199096	chr6	111669571	111670130	+	0	NA	intron (NM_001370529, intron 11 of 11)	intron (NM_001370529, intron 11 of 11)	-63576	NM_001164281	10758		NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
89536	chr16	89194071	89194530	+	0	NA	intron (NM_004933, intron 13 of 13)	intron (NM_004933, intron 13 of 13)	6237	NM_001384763	146429		NM_001242757	ENSG00000259803	SLC22A31	-	solute carrier family 22 member 31	protein-coding
103804	chr17	79083721	79083980	+	0	NA	exon (NM_001042573, exon 10 of 14)	exon (NM_001042573, exon 10 of 14)	9026	NM_001042573	64772		NM_022759	ENSG00000167280	ENGASE	-	endo-beta-N-acetylglucosaminidase	protein-coding
141324	chr2	240521321	240521780	+	0	NA	TTS (NM_001354026)	TTS (NM_001354026)	36438	NM_017844	51281		NM_016552	ENSG00000144504	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding
21666	chr1	206697851	206698300	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	13170	NM_004759	9261		NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	MAPK activated protein kinase 2	protein-coding
184825	chr5	111278551	111279230	+	0	NA	intron (NM_001744, intron 1 of 10)	intron (NM_001744, intron 1 of 10)	54506	NM_001323377	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
70052	chr14	100124771	100125830	+	0	NA	intron (NM_016337, intron 4 of 13)	intron (NM_016337, intron 4 of 13)	15645	NR_029888	442909		NR_029888	ENSG00000199082	MIR342	MIRN342|hsa-mir-342	microRNA 342	ncRNA
232153	chr9	134064871	134065030	+	0	NA	intron (NM_007371, intron 1 of 11)	intron (NM_007371, intron 1 of 11)	3076	NM_007371	8019		NM_007371	ENSG00000169925	BRD3	FSHRG2|ORFX|RING3L	bromodomain containing 3	protein-coding
133505	chr2	119972921	119973380	+	0	NA	intron (NM_002830, intron 26 of 26)	L1MB2|LINE|L1	-39927	NM_001184938	57669		NM_020909	ENSG00000115109	EPB41L5	BE37|LULU|LULU1|YMO1|YRT	erythrocyte membrane protein band 4.1 like 5	protein-coding
128305	chr2	54639071	54639430	+	0	NA	intron (NM_178313, intron 17 of 30)	intron (NM_178313, intron 17 of 30)	80856	NM_178313	6711		NM_003128	ENSG00000115306	SPTBN1	DDISBA|ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding
11322	chr1	89434301	89434580	+	0	NA	Intergenic	L2|LINE|L2	26761	NR_003133	400759		NR_003133	ENSG00000290525	GBP1P1	LIMIT	guanylate binding protein 1 pseudogene 1	pseudo
29585	chr10	71727601	71728600	+	0	NA	intron (NM_001171930, intron 29 of 30)	intron (NM_001171930, intron 29 of 30)	-8322	NM_001164375	414152		NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding
129694	chr2	70617421	70617930	+	0	NA	Intergenic	Intergenic	-63849	NM_003236	7039		NM_003236	ENSG00000163235	TGFA	TFGA	transforming growth factor alpha	protein-coding
111102	chr19	3201671	3202230	+	0	NA	intron (NM_020170, intron 6 of 14)	MER20|DNA|hAT-Charlie	16020	NM_020170	56926		NM_020170	ENSG00000125912	NCLN	NET59	nicalin	protein-coding
61080	chr13	48398751	48399050	+	0	NA	intron (NM_000321, intron 17 of 26)	intron (NM_000321, intron 17 of 26)	14213	NM_001162498	10161		NM_005767	ENSG00000139679	LPAR6	ARWH1|HYPT8|LAH3|LPA-6|P2RY5|P2Y5	lysophosphatidic acid receptor 6	protein-coding
4392	chr1	20932001	20932200	+	0	NA	intron (NM_001198801, intron 11 of 34)	Tigger1|DNA|TcMar-Tigger	56332	NR_031657	100302155		NR_031657	ENSG00000221808	MIR1256	MIRN1256|hsa-mir-1256	microRNA 1256	ncRNA
149910	chr21	36141421	36142480	+	0	NA	intron (NR_038894, intron 2 of 2)	intron (NR_038894, intron 2 of 2)	6871	NM_001236	874		NM_001236	ENSG00000159231	CBR3	HEL-S-25|SDR21C2|hCBR3	carbonyl reductase 3	protein-coding
187123	chr5	140417701	140418450	+	0	NA	intron (NM_020690, intron 1 of 35)	AluSx1|SINE|Alu	16242	NM_017978	54882		NM_017747	ENSG00000131503	ANKHD1	MASK|MASK1|PP2500|VBARP	ankyrin repeat and KH domain containing 1	protein-coding
85904	chr16	57074271	57075050	+	0	NA	non-coding (NR_169515, exon 38 of 48)	non-coding (NR_169515, exon 38 of 48)	-17923	NM_152727	221184		NM_152727	ENSG00000140848	CPNE2	COPN2|CPN2	copine 2	protein-coding
18038	chr1	160606221	160606480	+	0	NA	Intergenic	L1PBa|LINE|L1	-26834	NM_001184882	8832		NM_003874	ENSG00000066294	CD84	LY9B|SLAMF5|hCD84|mCD84	CD84 molecule	protein-coding
22464	chr1	221692801	221693230	+	0	NA	Intergenic	Intergenic	43885	NR_111939	11221		NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
193378	chr6	30343821	30344080	+	0	NA	TTS (NM_021253).2	TTS (NM_021253).2	-1206	NM_024839	79897		NM_024839	ENSG00000241370	RPP21	C6orf135|CAT60	ribonuclease P/MRP subunit p21	protein-coding
173782	chr4	17582371	17582750	+	0	NA	intron (NM_015907, intron 4 of 12)	intron (NM_015907, intron 4 of 12)	5362	NM_015907	51056		NM_015907	ENSG00000002549	LAP3	HEL-S-106|LAP|LAPEP|PEPS	leucine aminopeptidase 3	protein-coding
161701	chr3	43544301	43544580	+	0	NA	intron (NM_001346467, intron 12 of 13)	intron (NM_001346467, intron 12 of 13)	77486	NM_001346467	55129		NM_018075	ENSG00000160746	ANO10	SCAR10|TMEM16K	anoctamin 10	protein-coding
119991	chr19	41915921	41916800	+	0	NA	intron (NM_001365103, intron 1 of 5)	intron (NM_001365103, intron 1 of 5)	12089	NM_001365103	390937		NM_001365103	ENSG00000268041	ERFL	erfl1	ETS repressor factor like	protein-coding
159911	chr3	16928371	16928630	+	0	NA	intron (NM_001144382, intron 1 of 5)	intron (NM_001144382, intron 1 of 5)	-4590	NM_015184	23228		NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding
178033	chr4	139530851	139531250	+	0	NA	intron (NM_030648, intron 3 of 7)	intron (NM_030648, intron 3 of 7)	25719	NM_030648	80854		NM_030648	ENSG00000145391	SETD7	KMT7|SET7|SET7/9|SET9	SET domain containing 7, histone lysine methyltransferase	protein-coding
30827	chr10	86376921	86377800	+	0	NA	Intergenic	CpG	-10565	NM_017551	2894		NM_017551	ENSG00000182771	GRID1	GluD1|GluD1-b	glutamate ionotropic receptor delta type subunit 1	protein-coding
74952	chr15	63801421	63801880	+	0	NA	intron (NM_003922, intron 1 of 77)	intron (NM_003922, intron 1 of 77)	32298	NM_003922	8925		NM_003922	ENSG00000103657	HERC1	MDFPMR|p532|p619	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding
50104	chr12	44860321	44860600	+	0	NA	intron (NM_001145108, intron 2 of 19)	MLT1D|LTR|ERVL-MaLR	15201	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
48866	chr12	12440871	12441030	+	0	NA	intron (NM_058169, intron 3 of 3)	L2|LINE|L2	83872	NM_001330356	118426		NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding
78567	chr15	93021321	93021850	+	0	NA	intron (NM_001271, intron 38 of 38)	L1MEc|LINE|L1	51571	NM_001166286	56963		NM_020211	ENSG00000182175	RGMA	RGM	repulsive guidance molecule BMP co-receptor a	protein-coding
91662	chr17	5521271	5521830	+	0	NA	exon (NM_001033053, exon 13 of 16)	exon (NM_001033053, exon 13 of 16)	-20544	NM_001162371	728392		NM_001162371	ENSG00000286190	LOC728392	-	uncharacterized LOC728392	protein-coding
203234	chr6	168884121	168884980	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	79832	NR_136249	105378146		NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA
58532	chr12	132225301	132225700	+	0	NA	intron (NM_001122636, intron 6 of 10)	(CA)n|Simple_repeat|Simple_repeat	-19472	NM_021808	50614		NM_021808	ENSG00000182870	GALNT9	GALNAC-T9|GALNACT9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
122106	chr19	48780801	48781230	+	0	NA	Intergenic	LTR13A|LTR|ERVK	25491	NM_019113	26291		NM_019113	ENSG00000105550	FGF21	-	fibroblast growth factor 21	protein-coding
236543	chrX	72144151	72144650	+	0	NA	TTS (NM_001013627)	TTS (NM_001013627)	216	NM_207422								
217182	chr8	26313151	26313250	+	0	NA	intron (NM_002717, intron 2 of 9)	AluSx|SINE|Alu	19984	NM_001177591	5520		NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A|PR55alpha	protein phosphatase 2 regulatory subunit Balpha	protein-coding
28391	chr10	47472801	47473200	+	0	NA	intron (NM_001040084, intron 9 of 11)	intron (NM_001040084, intron 9 of 11)	11115	NM_001040084	653145		NM_001040084	ENSG00000265190	ANXA8	ANX8|CH17-360D5.2	annexin A8	protein-coding
200162	chr6	130518271	130518630	+	0	NA	Intergenic	Intergenic	81333	NM_052913	114801		NM_052913	ENSG00000164484	TMEM200A	KIAA1913|TTMA|TTMC	transmembrane protein 200A	protein-coding
222600	chr8	141022371	141022730	+	0	NA	Intergenic	Intergenic	-20471	NM_001352699	5747		NM_005607	ENSG00000169398	PTK2	FADK|FADK 1|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding
112987	chr19	7877651	7877950	+	0	NA	TTS (NR_033250)	TTS (NR_033250)	2432	NR_033250	388499		NR_033250		LYPLA2P2	-	LYPLA2 pseudogene 2	pseudo
191398	chr6	8066121	8066380	+	0	NA	intron (NR_037618, intron 3 of 6)	L2b|LINE|L2	-1836	NM_001199323	63915		NM_201280	ENSG00000188428	BLOC1S5	BLOS5|HPS11|MU|MUTED	biogenesis of lysosomal organelles complex 1 subunit 5	protein-coding
68956	chr14	91409171	91409400	+	0	NA	intron (NM_001080414, intron 2 of 29)	AluJo|SINE|Alu	8535	NM_001080414	440193		NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|HYC1|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding
87981	chr16	80585921	80586280	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-13292	NR_104666	101928276		NR_104665	ENSG00000260737	LINC01227	-	long intergenic non-protein coding RNA 1227	ncRNA
199404	chr6	116532001	116532310	+	0	NA	intron (NM_153036, intron 1 of 2)	intron (NM_153036, intron 1 of 2)	3112	NM_001256889	221301		NM_153036	ENSG00000164451	CALHM4	C6orf78|FAM26D	calcium homeostasis modulator family member 4	protein-coding
25876	chr10	11256051	11256350	+	0	NA	intron (NM_001326330, intron 4 of 12)	Charlie5|DNA|hAT-Charlie	88474	NR_126062	414196		NM_001012713		CELF2-AS1	C10orf31	CELF2 antisense RNA 1	ncRNA
55125	chr12	98598721	98599300	+	0	NA	promoter-TSS (NR_003015)	promoter-TSS (NR_003015)	-625	NR_003015	677832		NR_003015	ENSG00000212443	SNORA53	ACA53	small nucleolar RNA, H/ACA box 53	snoRNA
6731	chr1	30651601	30651800	+	0	NA	Intergenic	Intergenic	-67072	NR_034182	100129196		NR_034182	ENSG00000186056	MATN1-AS1	-	MATN1 antisense RNA 1	ncRNA
24849	chr10	455321	456180	+	0	NA	intron (NM_014974, intron 3 of 36)	intron (NM_014974, intron 3 of 36)	-172814	NR_147612	101930421		NR_147612	ENSG00000225140	LOC101930421	-	uncharacterized LOC101930421	ncRNA
204754	chr7	5592201	5593300	+	0	NA	promoter-TSS (NM_003088)	promoter-TSS (NM_003088)	-66	NM_003088	6624		NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding
12704	chr1	109492151	109492850	+	0	NA	intron (NM_001350174, intron 11 of 11)	intron (NM_001350174, intron 11 of 11)	-1536	NM_001134402	284613		NM_182580	ENSG00000174151	CYB561D1	-	cytochrome b561 family member D1	protein-coding
171809	chr4	646451	646800	+	0	NA	intron (NM_001145291, intron 3 of 21)	intron (NM_001145291, intron 3 of 21)	-5327	NM_001379247	5158		NM_000283	ENSG00000133256	PDE6B	CSNB3|CSNBAD2|GMP-PDEbeta|PDEB|RP40|rd1	phosphodiesterase 6B	protein-coding
114512	chr19	12792201	12795500	+	0	NA	TTS (NM_002229)	TTS (NM_002229)	2364	NM_002229	3726		NM_002229	ENSG00000171223	JUNB	AP-1	JunB proto-oncogene, AP-1 transcription factor subunit	protein-coding
222950	chr8	143135971	143136730	+	0	NA	Intergenic	Intergenic	23654	NM_002347	4062		NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 family member H	protein-coding
227315	chr9	89431251	89432200	+	0	NA	intron (NM_001371200, intron 2 of 20)	AluJr|SINE|Alu	48165	NM_006378	10507		NM_006378	ENSG00000187764	SEMA4D	A8|BB18|C9orf164|CD100|COLL4|GR3|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding
154592	chr22	36281771	36282930	+	0	NA	3' UTR (NM_002473, exon 41 of 41)	3' UTR (NM_002473, exon 41 of 41)	4557	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA
39663	chr11	61682521	61683300	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	2519	NM_006133	747		NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NOC2|NSDDR	diacylglycerol lipase alpha	protein-coding
206456	chr7	32890101	32891000	+	0	NA	intron (NM_015483, intron 1 of 3)	intron (NM_015483, intron 1 of 3)	1210	NM_015483	25948		NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding
133932	chr2	130427571	130428000	+	0	NA	non-coding (NR_046258, exon 1 of 6)	non-coding (NR_046258, exon 1 of 6)	761	NR_046258	100216479		NR_046258		FAR2P2	-	fatty acyl-CoA reductase 2 pseudogene 2	pseudo
80925	chr16	3801751	3802400	+	0	NA	intron (NM_004380, intron 3 of 30)	intron (NM_004380, intron 3 of 30)	78045	NM_001079846	1387		NM_004380	ENSG00000005339	CREBBP	CBP|KAT3A|MKHK1|RSTS|RSTS1	CREB binding protein	protein-coding
197252	chr6	70166451	70166630	+	0	NA	intron (NM_001858, intron 37 of 50)	intron (NM_001858, intron 37 of 50)	116657	NM_001377290	1297		NM_001851	ENSG00000112280	COL9A1	DJ149L1.1.2|EDM6|MED|STL4	collagen type IX alpha 1 chain	protein-coding
170136	chr3	183382351	183382730	+	0	NA	intron (NM_015078, intron 2 of 29)	intron (NM_015078, intron 2 of 29)	45729	NM_015078	23101		NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
225498	chr9	35657311	35659650	+	0	NA	promoter-TSS (NR_003051)	promoter-TSS (NR_003051)	188	NM_174923	203260		NM_174923	ENSG00000159884	CCDC107	PSEC0222	coiled-coil domain containing 107	protein-coding
121769	chr19	47764971	47765130	+	0	NA	intron (NR_132382, intron 2 of 2)	AluJb|SINE|Alu	3790	NR_132382	106144593		NR_132382	ENSG00000269656	NOP53-AS1	GLTSCR2-AS1	NOP53 antisense RNA 1	ncRNA
115729	chr19	16255701	16255900	+	0	NA	Intergenic	AluSx1|SINE|Alu	57889	NM_001130524	8907		NM_032493	ENSG00000072958	AP1M1	AP47|CLAPM2|CLTNM|MU-1A|mu1A	adaptor related protein complex 1 subunit mu 1	protein-coding
190080	chr5	177778971	177779600	+	0	NA	intron (NR_146226, intron 2 of 28)	(TG)n|Simple_repeat|Simple_repeat	3635	NR_146227	285596		NM_173663	ENSG00000170074	FAM153A	NY-REN-7	family with sequence similarity 153 member A	protein-coding
204653	chr7	5427351	5427450	+	0	NA	3' UTR (NM_001354886, exon 1 of 1)	3' UTR (NM_001354886, exon 1 of 1)	1527	NM_001354886	100129484		NM_001354886	ENSG00000234432	LINC02983	-	long intergenic non-protein coding RNA 2983	ncRNA
203380	chr6	170493251	170493450	+	0	NA	Intergenic	Intergenic	59957	NM_002793	5689		NM_002793	ENSG00000008018	PSMB1	HC5|NEDMHAL|PMSB1|PSC5	proteasome 20S subunit beta 1	protein-coding
38296	chr11	43567471	43567630	+	0	NA	Intergenic	Intergenic	-1756	NR_131246	100507261		NR_131246	ENSG00000235661	MIR670HG	-	MIR670 host gene	ncRNA
95872	chr17	38852881	38854390	+	0	NA	promoter-TSS (NR_002576)	promoter-TSS (NR_002576)	86	NM_000978	9349		NM_000978	ENSG00000125691	RPL23	L23|rpL17|uL14	ribosomal protein L23	protein-coding
54490	chr12	92064851	92065650	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	76463	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
87792	chr16	75460001	75460200	+	0	NA	intron (NM_001304998, intron 1 of 2)	intron (NM_001304998, intron 1 of 2)	4343	NM_001304997	124491		NM_145254	ENSG00000166822	TMEM170A	TMEM170	transmembrane protein 170A	protein-coding
86269	chr16	58501201	58502100	+	0	NA	intron (NM_001242833, intron 2 of 14)	CpG	1507	NM_001378344	65009		NM_020465	ENSG00000103034	NDRG4	BDM1|SMAP-8|SMAP8	NDRG family member 4	protein-coding
187770	chr5	145856651	145856750	+	0	NA	Intergenic	L2a|LINE|L2	16268	NM_001080516	643226		NM_001080516	ENSG00000204928	GRXCR2	DFNB101	glutaredoxin and cysteine rich domain containing 2	protein-coding
220184	chr8	95215871	95216030	+	0	NA	intron (NR_046232, intron 1 of 2)	intron (NR_046232, intron 1 of 2)	424	NR_046232	619344		NR_046232	ENSG00000253351	LINC01298	C8orf69	long intergenic non-protein coding RNA 1298	ncRNA
103037	chr17	77107401	77108600	+	0	NA	intron (NM_001204410, intron 3 of 18)	FLAM_C|SINE|Alu	18583	NR_106997	102466864		NR_106997	ENSG00000284250	MIR6516	hsa-mir-6516	microRNA 6516	ncRNA
128667	chr2	61458401	61458850	+	0	NA	intron (NM_014709, intron 1 of 79)	(A)n|Simple_repeat|Simple_repeat	12462	NM_014709	9736		NM_014709	ENSG00000115464	USP34	-	ubiquitin specific peptidase 34	protein-coding
204903	chr7	6106101	6106850	+	0	NA	intron (NM_001365764, intron 1 of 15)	intron (NM_001365764, intron 1 of 15)	1526	NM_001365764	84132		NM_032172	ENSG00000106346	USP42	-	ubiquitin specific peptidase 42	protein-coding
233039	chr9	137044251	137044900	+	0	NA	intron (NM_015392, intron 1 of 8)	intron (NM_015392, intron 1 of 8)	1602	NM_015392	56654		NM_015392	ENSG00000107281	NPDC1	CAB|CAB-|CAB-1|CAB1|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
190201	chr5	178215171	178215330	+	0	NA	intron (NR_103509, intron 7 of 9)	intron (NR_103509, intron 7 of 9)	10717	NM_031266	3182		NM_004499	ENSG00000197451	HNRNPAB	ABBP1|HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	protein-coding
157243	chr22	43344521	43344780	+	0	NA	Intergenic	Intergenic	-1278	NM_173050	80274		NM_152514	ENSG00000159307	SCUBE1	-	signal peptide, CUB domain and EGF like domain containing 1	protein-coding
54465	chr12	91986221	91986680	+	0	NA	non-coding (NR_046159, exon 6 of 6)	non-coding (NR_046159, exon 6 of 6)	155263	NR_046159	256021		NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
123748	chr19	55074551	55075050	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1069	NM_133180	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
74617	chr15	60649251	60650650	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	-22420	NM_134260	6095		NM_002943	ENSG00000069667	RORA	IDDECA|NR1F1|ROR1|ROR2|ROR3|RORa1|RORalpha|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
47764	chr12	6546321	6546780	+	0	NA	intron (NM_001039670, intron 8 of 9)	AluY|SINE|Alu	9492	NR_036467	25900		NM_015438	ENSG00000010295	IFFO1	HOM-TES-103|IFFO	intermediate filament family orphan 1	protein-coding
84025	chr16	29490651	29490950	+	0	NA	intron (NM_001355401, intron 5 of 7)	AluSx|SINE|Alu	15074	NM_001355401	440353		NM_001355401	ENSG00000169203	NPIPB12	-	nuclear pore complex interacting protein family member B12	protein-coding
43566	chr11	83036051	83036230	+	0	NA	intron (NM_014488, intron 1 of 5)	MIRb|SINE|MIR	-1866	NM_001286059	27314		NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding
157327	chr22	44625951	44626800	+	0	NA	promoter-TSS (NR_044991)	promoter-TSS (NR_044991)	-956	NR_044991	414351		NR_044991		LINC00229	C22orf10|NCRNA00229|dJ474I12.C22.2	long intergenic non-protein coding RNA 229	ncRNA
73867	chr15	50324101	50324300	+	0	NA	intron (NM_016654, intron 1 of 8)	AluJb|SINE|Alu	-29974	NR_024490	100129387		NR_024490		GABPB1-AS1	-	GABPB1 antisense RNA 1	ncRNA
160017	chr3	18404301	18404500	+	0	NA	intron (NM_001322873, intron 5 of 10)	intron (NM_001322873, intron 5 of 10)	20939	NM_002971	6304		NM_002971	ENSG00000182568	SATB1	DEFDA|DHDBV|KTZSL	SATB homeobox 1	protein-coding
144775	chr20	36625371	36625780	+	0	NA	intron (NM_175077, intron 5 of 7)	AluJr|SINE|Alu	19796	NM_018840	55969		NM_018840	ENSG00000101084	RAB5IF	C20orf24|CFSMR2|OPTI|PNAS-11|RCAF1|RIP5	RAB5 interacting factor	protein-coding
218559	chr8	54153171	54153580	+	0	NA	Intergenic	Intergenic	18134	NM_014175	29088		NM_014175	ENSG00000137547	MRPL15	HSPC145|L15mt|MRP-L15|MRP-L7|RPML7|uL15m	mitochondrial ribosomal protein L15	protein-coding
59894	chr13	30738101	30738480	+	0	NA	intron (NM_001629, intron 1 of 4)	intron (NM_001629, intron 1 of 4)	2747	NM_001629	241		NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding
237851	chrX	130112551	130113130	+	0	NA	Intergenic	AluSz|SINE|Alu	-1949	NM_001127197	2000		NM_001421	ENSG00000102034	ELF4	AIFBL2|ELFR|MEF	E74 like ETS transcription factor 4	protein-coding
160384	chr3	27945121	27945380	+	0	NA	Intergenic	Intergenic	-111114	NR_132438	100996624		NR_132438	ENSG00000229243	LINC01981	-	long intergenic non-protein coding RNA 1981	ncRNA
99800	chr17	51265201	51265400	+	0	NA	intron (NM_016001, intron 2 of 13)	AluSq|SINE|Alu	4754	NM_016001	51096		NM_016001	ENSG00000011260	UTP18	CGI-48|WDR50	UTP18 small subunit processome component	protein-coding
11092	chr1	85288201	85288400	+	0	NA	Intergenic	AluJr4|SINE|Alu	-11668	NM_003921	8915		NM_003921	ENSG00000142867	BCL10	CARMEN|CIPER|CLAP|IMD37|c-E10|mE10	BCL10 immune signaling adaptor	protein-coding
110828	chr19	2488871	2490150	+	0	NA	Intergenic	CpG	13383	NM_015675	4616		NM_015675	ENSG00000099860	GADD45B	GADD45BETA|MYD118	growth arrest and DNA damage inducible beta	protein-coding
147571	chr20	60653921	60654000	+	0	NA	Intergenic	AluJo|SINE|Alu	89398	NR_039653	100616440		NR_039653	ENSG00000265617	MIR548AG2	-	microRNA 548ag-2	ncRNA
182821	chr5	69166451	69167750	+	0	NA	promoter-TSS (NM_001354844)	promoter-TSS (NM_001354844)	-50	NM_031966	891		NM_031966	ENSG00000134057	CCNB1	CCNB	cyclin B1	protein-coding
164813	chr3	70957671	70958130	+	0	NA	non-coding (NR_146142, exon 20 of 20)	non-coding (NR_146142, exon 20 of 20)	107024	NM_001349344	27086		NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding
215744	chr8	1826371	1826730	+	0	NA	intron (NM_001308153, intron 2 of 29)	intron (NM_001308153, intron 2 of 29)	2624	NM_001308153	9639		NM_014629	ENSG00000104728	ARHGEF10	GEF10|SNCV	Rho guanine nucleotide exchange factor 10	protein-coding
175195	chr4	56544401	56545280	+	0	NA	intron (NM_001256475, intron 1 of 8)	CpG	14234	NM_001256475	100506564		NM_001256475	ENSG00000249693	SPMAP2L	THEGL	sperm microtubule associated protein 2 like	protein-coding
27274	chr10	30049051	30049380	+	0	NA	intron (NM_001350021, intron 1 of 4)	intron (NM_001350021, intron 1 of 4)	10371	NM_020848	57608		NM_020848	ENSG00000165757	JCAD	KIAA1462	junctional cadherin 5 associated	protein-coding
99461	chr17	50147051	50147680	+	0	NA	intron (NM_032595, intron 1 of 9)	intron (NM_032595, intron 1 of 9)	3312	NM_032595	84687		NM_032595	ENSG00000108819	PPP1R9B	PPP1R6|PPP1R9|SPINO|Spn	protein phosphatase 1 regulatory subunit 9B	protein-coding
94404	chr17	28980751	28980850	+	0	NA	intron (NM_178860, intron 2 of 16)	AluSq2|SINE|Alu	25233	NM_178860	124925		NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding
127285	chr2	38732741	38733930	+	0	NA	intron (NM_138801, intron 6 of 6)	Charlie10a|DNA|hAT-Charlie	18026	NM_001031684	6432		NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding
157570	chr22	45971471	45971930	+	0	NA	intron (NM_058238, intron 1 of 3)	CpG	5462	NM_058238	7477		NM_058238	ENSG00000188064	WNT7B	-	Wnt family member 7B	protein-coding
151158	chr21	44928821	44929400	+	0	NA	promoter-TSS (NM_001127491)	promoter-TSS (NM_001127491)	-295	NM_001127491	3689		NM_000211	ENSG00000160255	ITGB2	CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7	integrin subunit beta 2	protein-coding
60049	chr13	32838971	32839130	+	0	NA	intron (NR_047020, intron 4 of 4)	intron (NR_047020, intron 4 of 4)	72602	NR_047020	100874167		NR_047020		LINC00423	-	long intergenic non-protein coding RNA 423	ncRNA
170713	chr3	187984321	187984580	+	0	NA	Intergenic	Intergenic	-8043	NR_135537	105374266		NR_135537		LINC01991	-	long intergenic non-protein coding RNA 1991	ncRNA
41656	chr11	66549651	66550780	+	0	NA	intron (NR_047663, intron 1 of 20)	MIR3|SINE|MIR	3312	NM_001104	89		NM_001104	ENSG00000248746	ACTN3	ACTN3D	actinin alpha 3	protein-coding
98852	chr17	48455371	48455730	+	0	NA	intron (NR_110804, intron 4 of 5)	LTR1E|LTR|ERV1	10717	NR_110804	101927166		NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
233333	chr9	137438171	137438530	+	0	NA	intron (NM_198585, intron 1 of 8)	intron (NM_198585, intron 1 of 8)	3007	NM_198585	377841		NM_198585	ENSG00000188833	ENTPD8	E-NTPDase|GLSR2492|NTPDase-8|UNQ2492	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding
228533	chr9	100601201	100601500	+	0	NA	Intergenic	LTR41|LTR|ERVL	23271	NM_001018116	347273		NM_001018116	ENSG00000170681	CAVIN4	MURC|cavin-4	caveolae associated protein 4	protein-coding
215643	chr8	234771	235150	+	0	NA	intron (NM_001287254, intron 1 of 5)	intron (NM_001287254, intron 1 of 5)	2504	NM_001042416	169270		NM_173539	ENSG00000172748	ZNF596	-	zinc finger protein 596	protein-coding
184792	chr5	111158021	111158530	+	0	NA	Intergenic	Intergenic	-65308	NM_001323375	814		NM_001744	ENSG00000152495	CAMK4	CaMK IV|CaMK-GR|CaMKIV|caMK	calcium/calmodulin dependent protein kinase IV	protein-coding
160230	chr3	23953651	23954280	+	0	NA	intron (NM_001145425, intron 1 of 7)	intron (NM_001145425, intron 1 of 7)	-7403	NM_001377380	28512		NM_020345	ENSG00000197885	NKIRAS1	KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras like 1	protein-coding
230802	chr9	129012401	129012600	+	0	NA	intron (NM_020145, intron 5 of 10)	intron (NM_020145, intron 5 of 10)	15831	NM_001369914	56904		NM_020145	ENSG00000148341	SH3GLB2	PP6569|PP9455|RRIG1	SH3 domain containing GRB2 like, endophilin B2	protein-coding
39009	chr11	47737571	47738350	+	0	NA	intron (NM_015308, intron 8 of 16)	AluSq|SINE|Alu	-22591	NM_024783	79841		NM_024783	ENSG00000165923	AGBL2	CCP2	AGBL carboxypeptidase 2	protein-coding
237965	chrX	133763121	133763530	+	0	NA	intron (NM_001164619, intron 1 of 6)	intron (NM_001164619, intron 1 of 6)	-134118	NR_148713	110806308		NR_148713	ENSG00000286096	GPC3-AS1	-	GPC3 antisense RNA 1	ncRNA
75987	chr15	70555751	70556180	+	0	NA	Intergenic	MIR3|SINE|MIR	30641	NR_135691	101929151		NR_135691	ENSG00000280639	LINC02204	-	long intergenic non-protein coding RNA 2204	ncRNA
236270	chrX	66017021	66017480	+	0	NA	Intergenic	MIRc|SINE|MIR	-1620	NR_029637	407008		NR_029637	ENSG00000284567	MIR223	MIRN223|miRNA223|mir-223	microRNA 223	ncRNA
121835	chr19	48135551	48135650	+	0	NA	intron (NR_135497, intron 16 of 27)	intron (NR_135497, intron 16 of 27)	-24748	NM_001159322	8605		NM_003706	ENSG00000105499	PLA2G4C	CPLA2-gamma	phospholipase A2 group IVC	protein-coding
153414	chr22	24950271	24950630	+	0	NA	Intergenic	Intergenic	-3755	NM_001001663	255349		NM_001001663	ENSG00000206069	LHFPL7	TMEM211|bA9F11.1	LHFPL tetraspan subfamily member 7	protein-coding
113494	chr19	10085121	10086700	+	0	NA	promoter-TSS (NM_001308277)	promoter-TSS (NM_001308277)	-407	NM_018381	55337		NM_018381	ENSG00000130813	SHFL	C19orf66|IRAV|RyDEN|SFL	shiftless antiviral inhibitor of ribosomal frameshifting	protein-coding
42232	chr11	68053001	68053480	+	0	NA	non-coding (NR_164782, exon 13 of 13)	non-coding (NR_164782, exon 13 of 13)	8446	NR_106811	102465451		NR_106811	ENSG00000275022	MIR6753	hsa-mir-6753	microRNA 6753	ncRNA
148276	chr20	63693321	63694300	+	0	NA	intron (NM_032957, intron 30 of 34)	intron (NM_032957, intron 30 of 34)	-2842	NM_003823	8771		NM_003823	ENSG00000243509	TNFRSF6B	DCR3|DJ583P15.1.1|M68|M68E|TR6	TNF receptor superfamily member 6b	protein-coding
191366	chr6	7275651	7276600	+	0	NA	Intergenic	Intergenic	37074	NM_003144	6745		NM_003144	ENSG00000124783	SSR1	TRAPA	signal sequence receptor subunit 1	protein-coding
103210	chr17	77478421	77478780	+	0	NA	intron (NM_001113495, intron 1 of 9)	AluSp|SINE|Alu	2965	NM_001113495	10801		NM_006640	ENSG00000184640	SEPTIN9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1	septin 9	protein-coding
152123	chr22	19946571	19946930	+	0	NA	intron (NM_000754, intron 1 of 5)	MER31-int|LTR|ERV1	-4152	NM_001135161	1312		NM_000754	ENSG00000093010	COMT	HEL-S-98n	catechol-O-methyltransferase	protein-coding
170614	chr3	187003271	187003430	+	0	NA	intron (NM_173216, intron 2 of 7)	MLT2B4|LTR|ERVL	-18505	NM_003032	6480		NM_003032	ENSG00000073849	ST6GAL1	CDw75|SIAT1|ST6GalI|ST6N	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein-coding
42454	chr11	69382301	69382530	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-43240	NM_001319657	102724265		NM_001319657	ENSG00000255980	LINC02953	-	long intergenic non-protein coding RNA 2953	ncRNA
104302	chr17	80888771	80888930	+	0	NA	intron (NM_020761, intron 17 of 33)	G-rich|Low_complexity|Low_complexity	82363	NR_148968	400627		NR_148968	ENSG00000261924	LOC400627	-	uncharacterized LOC400627	ncRNA
211426	chr7	105057871	105058430	+	0	NA	intron (NM_182931, intron 3 of 26)	L1MC5a|LINE|L1	43945	NM_182931	55904		NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L|ODLURO|SETD5B	lysine methyltransferase 2E (inactive)	protein-coding
28856	chr10	62633671	62634030	+	0	NA	Intergenic	Intergenic	-170870	NM_032804	84890		NM_032804	ENSG00000181915	ADO	C10orf22	2-aminoethanethiol dioxygenase	protein-coding
167115	chr3	127669901	127670400	+	0	NA	intron (NM_015720, intron 6 of 7)	MIR|SINE|MIR	-2788	NM_032548	80325		NM_032548	ENSG00000114626	ABTB1	BPOZ|BPOZ-2|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding
7656	chr1	35640801	35642830	+	0	NA	promoter-TSS (NM_002794)	promoter-TSS (NM_002794)	-289	NM_002794	5690		NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome 20S subunit beta 2	protein-coding
225466	chr9	35496101	35496300	+	0	NA	intron (NM_001330740, intron 1 of 10)	intron (NM_001330740, intron 1 of 10)	6089	NM_001330740	9853		NM_014806	ENSG00000198853	RUSC2	Iporin|MRT61	RUN and SH3 domain containing 2	protein-coding
173850	chr4	22357371	22357530	+	0	NA	Intergenic	L1P4a|LINE|L1	-17784	NR_037877	100505912		NR_037877		LOC100505912	-	uncharacterized LOC100505912	ncRNA
80717	chr16	3091051	3091750	+	0	NA	intron (NM_032805, intron 5 of 5)	AluJo|SINE|Alu	7894	NM_001282415	84891		NM_032805	ENSG00000130182	ZSCAN10	ZFP206|ZNF206	zinc finger and SCAN domain containing 10	protein-coding
65976	chr14	56578251	56578650	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1348	NM_017799	54916		NM_017799	ENSG00000070269	TMEM260	C14orf101|SHDRA	transmembrane protein 260	protein-coding
199172	chr6	111751051	111751930	+	0	NA	intron (NM_002037, intron 3 of 13)	intron (NM_002037, intron 3 of 13)	7641	NM_153048	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
64949	chr14	35827671	35827830	+	0	NA	intron (NM_032352, intron 1 of 9)	intron (NM_032352, intron 1 of 9)	1412	NM_032352	84312		NM_032352	ENSG00000100916	BRMS1L	BRMS1|p40	BRMS1 like transcriptional repressor	protein-coding
45405	chr11	118346651	118347250	+	0	NA	intron (NM_000073, intron 1 of 6)	intron (NM_000073, intron 1 of 6)	2606	NM_000073	917		NM_000073	ENSG00000160654	CD3G	CD3-GAMMA|CD3GAMMA|IMD17|T3G	CD3 gamma subunit of T-cell receptor complex	protein-coding
45891	chr11	120224821	120225180	+	0	NA	intron (NM_178507, intron 1 of 3)	intron (NM_178507, intron 1 of 3)	-11638	NM_001244682	25833		NM_014352	ENSG00000137709	POU2F3	Epoc-1|OCT-11|OCT11|OTF-11|PLA-1|PLA1|Skn-1a	POU class 2 homeobox 3	protein-coding
41899	chr11	67264671	67265330	+	0	NA	Intergenic	Intergenic	-1473	NM_001619	156		NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding
79854	chr16	1472751	1473380	+	0	NA	intron (NM_001287, intron 1 of 24)	AluJb|SINE|Alu	1963	NM_001287	1186		NM_001287	ENSG00000103249	CLCN7	CLC-7|CLC7|HOD|OPTA2|OPTB4|PPP1R63	chloride voltage-gated channel 7	protein-coding
178682	chr4	152524121	152524900	+	0	NA	intron (NM_001349798, intron 2 of 13)	Charlie30a|DNA|hAT-Charlie	10523	NM_033632	55294		NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|DEDHIL|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding
118215	chr19	35156601	35157130	+	0	NA	intron (NM_014164, intron 2 of 8)	L2a|LINE|L2	2130	NM_014164	53827		NM_014164	ENSG00000089327	FXYD5	DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC	FXYD domain containing ion transport regulator 5	protein-coding
158295	chr22	50380051	50380350	+	0	NA	intron (NM_001351641, intron 2 of 23)	MSTB1|LTR|ERVL-MaLR	-27242	NR_162128	113218480		NR_162128		MIR12114	-	microRNA 12114	ncRNA
105888	chr18	3266621	3267600	+	0	NA	intron (NM_001144945, intron 1 of 3)	MER5B|DNA|hAT-Charlie	4391	NM_001144945	103910		NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding
189661	chr5	176360951	176363030	+	0	NA	promoter-TSS (NM_020444)	promoter-TSS (NM_020444)	-183	NM_001079685	57179		NM_020444	ENSG00000122203	KIAA1191	p33MONOX|p60MONOX	KIAA1191	protein-coding
10598	chr1	67429611	67431600	+	0	NA	promoter-TSS (NM_001018068)	promoter-TSS (NM_001018068)	-203	NM_001018069	26135		NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding
231804	chr9	132405601	132405800	+	0	NA	intron (NM_007344, intron 1 of 10)	L2b|LINE|L2	1140	NM_007344	7270		NM_007344	ENSG00000125482	TTF1	TTF-1|TTF-I	transcription termination factor 1	protein-coding
8594	chr1	41432551	41433350	+	0	NA	Intergenic	Intergenic	51733	NM_001302269	1907		NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding
48376	chr12	9449351	9449650	+	0	NA	intron (NR_153413, intron 1 of 45)	LTR12C|LTR|ERV1	1213	NR_153413	408186		NR_153413		LOC408186	OVOS|OVOS1	alpha-2-macroglobulin like 1 pseudogene	pseudo
108803	chr18	78513951	78514450	+	0	NA	Intergenic	Intergenic	-466075	NM_171999	27164		NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding
232615	chr9	136440751	136441230	+	0	NA	3' UTR (NM_001276418, exon 29 of 29)	3' UTR (NM_001276418, exon 29 of 29)	-1145	NM_019892	56623		NM_019892	ENSG00000148384	INPP5E	CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin	inositol polyphosphate-5-phosphatase E	protein-coding
111285	chr19	3564301	3564700	+	0	NA	Intergenic	Intergenic	-6914	NM_174983	126321		NM_021731	ENSG00000161091	MFSD12	C19orf28|PP3501|SLC59B1	major facilitator superfamily domain containing 12	protein-coding
171612	chr3	197428151	197428480	+	0	NA	Intergenic	Intergenic	81346	NR_145451	100129516		NR_145451		LINC02012	-	long intergenic non-protein coding RNA 2012	ncRNA
74450	chr15	59610901	59611280	+	0	NA	promoter-TSS (NM_004751)	promoter-TSS (NM_004751)	-693	NM_004751	9245		NM_004751	ENSG00000140297	GCNT3	C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding
114133	chr19	11211451	11211550	+	0	NA	intron (NM_020812, intron 37 of 47)	intron (NM_020812, intron 37 of 47)	7872	NR_134909	105372273		NR_134909	ENSG00000267082	DOCK6-AS1	-	DOCK6 antisense RNA 1	ncRNA
103128	chr17	77387171	77387330	+	0	NA	intron (NM_001113494, intron 1 of 10)	MLT1C|LTR|ERVL-MaLR	9804	NR_036200	100422851		NR_036200	ENSG00000264060	MIR4316	-	microRNA 4316	ncRNA
18775	chr1	167513871	167514680	+	0	NA	intron (NM_001378515, intron 1 of 8)	AluSx3|SINE|Alu	4254	NM_000734	919		NM_000734	ENSG00000198821	CD247	CD3-ZETA|CD3H|CD3Q|CD3Z|CD3ZETA|IMD25|T3Z|TCRZ	CD247 molecule	protein-coding
45198	chr11	117795571	117796250	+	0	NA	intron (NM_001367905, intron 1 of 6)	intron (NM_001367905, intron 1 of 6)	1306	NM_020693	57453		NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding
225775	chr9	37425171	37425630	+	0	NA	intron (NM_012203, intron 2 of 8)	intron (NM_012203, intron 2 of 8)	2704	NM_012203	9380		NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
232488	chr9	136252501	136253930	+	0	NA	3' UTR (NM_001378188, exon 26 of 26)	3' UTR (NM_001378188, exon 26 of 26)	-7403	NM_181701	169714		NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding
223086	chr8	143417921	143418400	+	0	NA	intron (NR_126358, intron 1 of 1)	(CCAC)n|Simple_repeat|Simple_repeat	481	NR_126358	104326051		NR_126358		MAFA-AS1	TCONS_00014882	MAFA antisense RNA 1	ncRNA
18614	chr1	165842821	165843100	+	0	NA	intron (NM_012474, intron 1 of 6)	intron (NM_012474, intron 1 of 6)	15346	NM_012474	7371		NM_012474	ENSG00000143179	UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding
5014	chr1	24483221	24483680	+	0	NA	Intergenic	Intergenic	-18894	NM_001251979	11123		NM_013441	ENSG00000117602	RCAN3	DSCR1L2|MCIP3|RCN3|hRCN3	RCAN family member 3	protein-coding
237300	chrX	115873201	115873400	+	0	NA	intron (NR_147172, intron 2 of 2)	CpG	32336	NR_147172	106029310		NR_147172		DANT1	-	DXZ4 associated non-coding transcript 1, proximal	ncRNA
23272	chr1	227934751	227935400	+	0	NA	intron (NM_003395, intron 1 of 3)	intron (NM_003395, intron 1 of 3)	6608	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA
161382	chr3	41189901	41190100	+	0	NA	Intergenic	LTR78|LTR|ERV1	-9505	NM_001330729	1499		NM_001904	ENSG00000168036	CTNNB1	CTNNB|EVR7|MRD19|NEDSDV|armadillo	catenin beta 1	protein-coding
184596	chr5	103118471	103118630	+	0	NA	intron (NM_017676, intron 1 of 7)	intron (NM_017676, intron 1 of 7)	1588	NM_001317954	54826		NM_017676	ENSG00000145723	GIN1	GIN-1|TGIN1|ZH2C2	gypsy retrotransposon integrase 1	protein-coding
173301	chr4	7130871	7131430	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-27774	NR_027441	730971		NR_027441		LINC02447	-	long intergenic non-protein coding RNA 2447	ncRNA
216430	chr8	19445101	19445700	+	0	NA	intron (NR_148900, intron 4 of 9)	intron (NR_148900, intron 4 of 9)	131424	NM_001363111	63898		NM_022071	ENSG00000104611	SH2D4A	PPP1R38|SH2A	SH2 domain containing 4A	protein-coding
235925	chrX	53190251	53190350	+	0	NA	intron (NR_148672, intron 25 of 26)	intron (NR_148672, intron 25 of 26)	5188	NR_106955	102465539		NR_106955	ENSG00000276575	MIR6895	hsa-mir-6895	microRNA 6895	ncRNA
117835	chr19	31338121	31338480	+	0	NA	intron (NR_138034, intron 1 of 1)	intron (NR_138034, intron 1 of 1)	11136	NR_138034	57616		NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding
28699	chr10	61001171	61001630	+	0	NA	promoter-TSS (NM_001350903)	promoter-TSS (NM_001350903)	40	NM_001350907	9886		NM_014836	ENSG00000072422	RHOBTB1	-	Rho related BTB domain containing 1	protein-coding
7050	chr1	31956001	31956750	+	0	NA	Intergenic	Intergenic	-18007	NM_001195100	8073		NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase 4A2	protein-coding
199229	chr6	111817771	111817930	+	0	NA	intron (NM_002037, intron 2 of 13)	intron (NM_002037, intron 2 of 13)	55221	NM_153047	2534		NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding
22297	chr1	212979321	212979780	+	0	NA	intron (NM_024749, intron 5 of 5)	intron (NM_024749, intron 5 of 5)	29009	NM_024749	79805		NM_024749	ENSG00000143494	VASH2	-	vasohibin 2	protein-coding
93083	chr17	17626321	17626580	+	0	NA	Intergenic	Intergenic	-34742	NM_001267551	10400		NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding
185310	chr5	126761251	126761980	+	0	NA	intron (NR_134485, intron 2 of 3)	intron (NR_134485, intron 2 of 3)	14871	NR_134485	102723557		NR_134485	ENSG00000251072	LMNB1-DT	-	LMNB1 divergent transcript	ncRNA
173034	chr4	4859401	4860430	+	0	NA	exon (NM_002448, exon 1 of 2)	exon (NM_002448, exon 1 of 2)	250	NM_002448	4487		NM_002448	ENSG00000163132	MSX1	ECTD3|HOX7|HYD1|STHAG1	msh homeobox 1	protein-coding
222878	chr8	142771721	142771980	+	0	NA	3' UTR (NM_001356370, exon 4 of 4)	3' UTR (NM_001356370, exon 4 of 4)	-2022	NM_001356372	432355		NM_177458	ENSG00000283992	SLURP2	SLURP-2	secreted LY6/PLAUR domain containing 2	protein-coding
198939	chr6	110528071	110528300	+	0	NA	Intergenic	Intergenic	-51572	NM_033125	85413		NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
144498	chr20	35663451	35664400	+	0	NA	intron (NM_001198838, intron 1 of 2)	intron (NM_001198838, intron 1 of 2)	975	NR_037188	8904		NM_003915	ENSG00000214078	CPNE1	COPN1|CPN1	copine 1	protein-coding
46740	chr11	128982421	128982500	+	0	NA	intron (NM_001378025, intron 14 of 21)	intron (NM_001378025, intron 14 of 21)	-39061	NM_022112	63970		NM_022112	ENSG00000120471	TP53AIP1	P53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein-coding
227426	chr9	89828351	89828650	+	0	NA	Intergenic	Intergenic	-140916	NR_109791	101927847		NR_109791		LOC101927847	-	uncharacterized LOC101927847	ncRNA
102785	chr17	76355951	76356280	+	0	NA	Intergenic	AluSx3|SINE|Alu	-1917	NM_001366236	5635		NM_002766	ENSG00000161542	PRPSAP1	PAP39	phosphoribosyl pyrophosphate synthetase associated protein 1	protein-coding
189805	chr5	176875871	176876530	+	0	NA	intron (NM_133369, intron 8 of 14)	intron (NM_133369, intron 8 of 14)	23146	NM_002115	3101		NM_002115	ENSG00000160883	HK3	HKIII|HXK3	hexokinase 3	protein-coding
154768	chr22	36521871	36522230	+	0	NA	intron (NR_156418, intron 6 of 14)	MER8|DNA|TcMar-Tigger	7116	NM_003753	8664		NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding
73179	chr15	41495351	41496500	+	0	NA	intron (NM_002220, intron 1 of 6)	CpG	2051	NM_002220	3706		NM_002220	ENSG00000137825	ITPKA	IP3-3KA|IP3KA	inositol-trisphosphate 3-kinase A	protein-coding
33906	chr10	124553551	124553650	+	0	NA	intron (NM_022126, intron 6 of 6)	AluY|SINE|Alu	91777	NM_001318332	64077		NM_022126	ENSG00000107902	LHPP	HDHD2B	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
110	chr1	486851	486950	+	0	NA	Intergenic	AluSq2|SINE|Alu	8545	NR_028325	100132062		NR_028325		LOC100132062	-	uncharacterized LOC100132062	ncRNA
168312	chr3	141575071	141575730	+	0	NA	intron (NM_006506, intron 14 of 23)	intron (NM_006506, intron 14 of 23)	-87799	NR_136190	646730		NR_136190		LINC02618	-	long intergenic non-protein coding RNA 2618	ncRNA
30628	chr10	80378101	80378600	+	0	NA	Intergenic	Intergenic	21569	NM_032372	84332		NM_032372	ENSG00000133665	DYDC2	-	DPY30 domain containing 2	protein-coding
93276	chr17	18092021	18092280	+	0	NA	intron (NM_001330144, intron 1 of 12)	L2b|LINE|L2	4202	NM_001388	1819		NM_001388	ENSG00000108591	DRG2	-	developmentally regulated GTP binding protein 2	protein-coding
183058	chr5	73454171	73454690	+	0	NA	intron (NR_126410, intron 4 of 4)	intron (NR_126410, intron 4 of 4)	-5653	NM_004472	2297		NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding
9719	chr1	53133121	53133580	+	0	NA	intron (NM_001287595, intron 2 of 10)	L2c|LINE|L2	9288	NR_109858	6512		NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding
2967	chr1	11929771	11930130	+	0	NA	Intergenic	Intergenic	-3523	NM_138346	90231		NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding
201505	chr6	149046621	149047180	+	0	NA	intron (NM_005715, intron 7 of 7)	intron (NM_005715, intron 7 of 7)	-14239	NR_134599	105378047		NR_134599		UST-AS2	-	UST antisense RNA 2	ncRNA
50322	chr12	46677871	46678030	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	148047	NM_018018	55089		NM_018018	ENSG00000139209	SLC38A4	ATA3|NAT3|PAAT|SNAT4	solute carrier family 38 member 4	protein-coding
38761	chr11	47159051	47159550	+	0	NA	intron (NM_001003676, intron 7 of 7)	AluSx|SINE|Alu	17579	NM_032389	84364		NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
64767	chr14	34619421	34619680	+	0	NA	intron (NR_159357, intron 2 of 12)	L2a|LINE|L2	10598	NR_159358	58533		NM_021249	ENSG00000129515	SNX6	MSTP010|TFAF2	sorting nexin 6	protein-coding
173978	chr4	26131801	26132550	+	0	NA	Intergenic	Charlie29a|DNA|hAT-Charlie	-31283	NM_001374401	3516		NM_005349	ENSG00000168214	RBPJ	AOS3|CBF-1|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBP-J kappa|RBP-JK|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
184568	chr5	102792621	102793080	+	0	NA	intron (NM_001364588, intron 1 of 24)	intron (NM_001364588, intron 1 of 24)	-15348	NM_001364582	5066		NM_000919	ENSG00000145730	PAM	PAL|PAM-1|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
17387	chr1	156602701	156603280	+	0	NA	Intergenic	Intergenic	-1503	NM_015590	54865		NM_015590	ENSG00000160818	GPATCH4	GPATC4	G-patch domain containing 4 (gene/pseudogene)	protein-coding
218385	chr8	43396521	43396650	+	0	NA	Intergenic	L1PA2|LINE|L1	104143	NM_001005365	340441		NM_001002920	ENSG00000188877	POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
199047	chr6	111478671	111479100	+	0	NA	intron (NM_001286432, intron 2 of 33)	intron (NM_001286432, intron 2 of 33)	4333	NM_001372078	5980		NM_002912	ENSG00000009413	REV3L	POLZ|REV3	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding
221182	chr8	120702001	120702750	+	0	NA	intron (NM_021021, intron 1 of 6)	L2c|LINE|L2	-58878	NR_125419	101927543		NR_125419	ENSG00000248318	LOC101927543	-	uncharacterized LOC101927543	ncRNA
146764	chr20	50852871	50853030	+	0	NA	intron (NM_198799, intron 4 of 4)	intron (NM_198799, intron 4 of 4)	56841	NM_001282532	23394		NM_015339	ENSG00000101126	ADNP	ADNP1|HVDAS|MRD28	activity dependent neuroprotector homeobox	protein-coding
106290	chr18	12774271	12774430	+	0	NA	Intergenic	AluSx1|SINE|Alu	-24928	NR_110763	100996324		NR_110763		LINC01882	-	long intergenic non-protein coding RNA 1882	ncRNA
58736	chr12	132597671	132599230	+	0	NA	Intergenic	CpG	12132	NM_001195520	100507055		NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding
116414	chr19	18003321	18003800	+	0	NA	intron (NM_001025604, intron 1 of 7)	AluSx1|SINE|Alu	2436	NM_001025604	27106		NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding
149617	chr21	33384701	33385550	+	0	NA	Intergenic	Intergenic	-17771	NM_001329128	3460		NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding
156494	chr22	41283671	41284230	+	0	NA	intron (NM_001317930, intron 1 of 15)	intron (NM_001317930, intron 1 of 15)	2237	NM_002883	5905		NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding
23625	chr1	230276971	230277530	+	0	NA	intron (NM_001291866, intron 15 of 15)	intron (NM_001291866, intron 15 of 15)	149082	NM_001258311	79605		NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding
117769	chr19	29696451	29696830	+	0	NA	Intergenic	Intergenic	18416	NM_001282929	83636		NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding
100789	chr17	64019801	64021250	+	0	NA	5' UTR (NM_001099789, exon 1 of 5)	5' UTR (NM_001099789, exon 1 of 5)	108	NM_001099789	3384		NM_000873	ENSG00000108622	ICAM2	CD102	intercellular adhesion molecule 2	protein-coding
230787	chr9	128938171	128938330	+	0	NA	intron (NM_001100877, intron 6 of 9)	AluSx|SINE|Alu	9353	NM_014908	22845		NM_014908	ENSG00000175283	DOLK	CDG1M|DK|DK1|SEC59|TMEM15	dolichol kinase	protein-coding
147419	chr20	58890001	58891600	+	0	NA	promoter-TSS (NM_001309842)	promoter-TSS (NM_001309842)	-621	NM_001077489	2778		NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI	GNAS complex locus	protein-coding
213862	chr7	142308301	142308900	+	0	NA	Intergenic	Intergenic	-36351	NR_036483	207147		NR_036483	ENSG00000293407	PRSS59P	TRY2P|Tryx5	serine protease 59, pseudogene	pseudo
144466	chr20	35602551	35602650	+	0	NA	non-coding (NR_119376, exon 11 of 43)	non-coding (NR_119376, exon 11 of 43)	4962	NR_119376	80307		NM_025206	ENSG00000088340	FER1L4	C20orf124	fer-1 like family member 4 (pseudogene)	pseudo
162554	chr3	48648151	48648250	+	0	NA	intron (NM_001407, intron 19 of 34)	intron (NM_001407, intron 19 of 34)	-3920	NR_039956	100616112		NR_039956	ENSG00000284575	MIR4793	-	microRNA 4793	ncRNA
98918	chr17	48607471	48607630	+	0	NA	3' UTR (NM_004502, exon 2 of 2)	3' UTR (NM_004502, exon 2 of 2)	-2564	NM_018952	3216		NM_018952	ENSG00000108511	HOXB6	HOX2|HOX2B|HU-2|Hox-2.2	homeobox B6	protein-coding
114716	chr19	13164301	13165730	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	14604	NM_004907	9592		NM_004907	ENSG00000160888	IER2	CHX1|ETR101	immediate early response 2	protein-coding
154796	chr22	36851051	36851150	+	0	NA	intron (NR_147197, intron 1 of 1)	intron (NR_147197, intron 1 of 1)	-9906	NM_013416	4689		NM_000631	ENSG00000100365	NCF4	CGD3|NCF|P40PHOX|SH3PXD4	neutrophil cytosolic factor 4	protein-coding
202111	chr6	154762171	154762330	+	0	NA	intron (NM_001286189, intron 3 of 21)	MLT1E1A|LTR|ERVL-MaLR	28834	NM_014892	22828		NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding
72022	chr15	28104501	28104700	+	0	NA	Intergenic	Intergenic	-5285	NM_001300984	4948		NM_000275	ENSG00000104044	OCA2	BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1	OCA2 melanosomal transmembrane protein	protein-coding
228112	chr9	96606571	96606930	+	0	NA	intron (NR_147239, intron 1 of 14)	AluSp|SINE|Alu	13093	NM_003671	8555		NM_003671	ENSG00000081377	CDC14B	CDC14B3|Cdc14B1|Cdc14B2|hCDC14B	cell division cycle 14B	protein-coding
11104	chr1	85830351	85830450	+	0	NA	intron (NR_146342, intron 43 of 60)	L1PA3|LINE|L1	-121967	NM_001170670	54680		NM_017953	ENSG00000117174	ZNHIT6	BCD1|C1orf181|NY-BR-75	zinc finger HIT-type containing 6	protein-coding
877	chr1	1636371	1638000	+	0	NA	exon (NM_001787, exon 15 of 20)	exon (NM_001787, exon 15 of 20)	4405	NR_002946	8511		NM_004659	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo
165271	chr3	75443851	75443950	+	0	NA	intron (NR_151705, intron 2 of 2)	LTR12C|LTR|ERV1	8592	NR_151707	107986100		NR_151705	ENSG00000272690	LINC02018	-	long intergenic non-protein coding RNA 2018	ncRNA
211315	chr7	103445651	103446530	+	0	NA	promoter-TSS (NM_001167962)	promoter-TSS (NM_001167962)	87	NR_135801	375611		NM_198999	ENSG00000170615	SLC26A5	DFNB61|PRES	solute carrier family 26 member 5	protein-coding
87596	chr16	73396601	73396830	+	0	NA	intron (NR_038234, intron 1 of 2)	THE1D|LTR|ERVL-MaLR	9910	NR_038234	100506172		NR_038234	ENSG00000258779	LOHAN2	LINC01568	lncRNA oncogene in head and neck cancer 2	ncRNA
83794	chr16	28802371	28803300	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-20213	NM_148414	11273		NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding
163637	chr3	52062251	52062550	+	0	NA	non-coding (NR_027331, exon 1 of 1)	non-coding (NR_027331, exon 1 of 1)	2712	NR_027331	100128378		NM_001123039		LINC00696	C3orf74	long intergenic non-protein coding RNA 696	ncRNA
15755	chr1	151146101	151147530	+	0	NA	promoter-TSS (NM_030913)	promoter-TSS (NM_030913)	-184	NM_001178062	10500		NM_030913	ENSG00000143434	SEMA6C	SEMAY|Sema-Y|m-SemaY|m-SemaY2	semaphorin 6C	protein-coding
138163	chr2	202627001	202627400	+	0	NA	Intergenic	L2a|LINE|L2	-7769	NM_173511	150864		NM_173511	ENSG00000138439	FAM117B	ALS2CR13	family with sequence similarity 117 member B	protein-coding
146663	chr20	50478101	50479030	+	0	NA	Intergenic	LTR1|LTR|ERV1	-31756	NM_001278618	5770		NM_002827	ENSG00000196396	PTPN1	PTP1B	protein tyrosine phosphatase non-receptor type 1	protein-coding
201164	chr6	142939551	142939880	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	5461	NM_006734	3097		NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	HIVEP zinc finger 2	protein-coding
70583	chr14	102613401	102614300	+	0	NA	intron (NM_015156, intron 2 of 11)	FLAM_C|SINE|Alu	21201	NM_015156	23186		NM_015156	ENSG00000089902	RCOR1	COREST|RCOR	REST corepressor 1	protein-coding
230619	chr9	128630121	128630580	+	0	NA	exon (NM_003127, exon 51 of 56)	exon (NM_003127, exon 51 of 56)	26500	NM_052844	89891		NM_052844	ENSG00000119333	DYNC2I2	CFAP133|DIC5|FAP133|SRTD11|WDR34|bA216B9.3	dynein 2 intermediate chain 2	protein-coding
100617	chr17	63551701	63552630	+	0	NA	intron (NR_073585, intron 1 of 7)	intron (NR_073585, intron 1 of 7)	1688	NR_073585	10238		NM_005828	ENSG00000136485	DCAF7	AN11|HAN11|SWAN-1|WDR68	DDB1 and CUL4 associated factor 7	protein-coding
19429	chr1	174225821	174226100	+	0	NA	intron (NM_001366447, intron 3 of 20)	L1MEf|LINE|L1	-49140	NM_001366449	9910		NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding
9300	chr1	46477221	46477900	+	0	NA	Intergenic	Intergenic	-12276	NM_172225	127343		NM_147192	ENSG00000197587	DMBX1	Atx|MBX|OTX3|PAXB	diencephalon/mesencephalon homeobox 1	protein-coding
89474	chr16	89097901	89099130	+	0	NA	intron (NM_001127214, intron 1 of 9)	intron (NM_001127214, intron 1 of 9)	4663	NM_001284316	197322		NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding
149789	chr21	34932101	34933230	+	0	NA	intron (NM_001754, intron 2 of 8)	MIRb|SINE|MIR	-43966	NM_001001890	861		NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	RUNX family transcription factor 1	protein-coding
198751	chr6	108569671	108570130	+	0	NA	intron (NM_201559, intron 2 of 3)	intron (NM_201559, intron 2 of 3)	8983	NM_001455	2309		NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding
33337	chr10	116744171	116744630	+	0	NA	intron (NM_001330164, intron 2 of 12)	intron (NM_001330164, intron 2 of 12)	-1834	NM_025015	259217		NM_025015	ENSG00000165868	HSPA12A	-	heat shock protein family A (Hsp70) member 12A	protein-coding
32857	chr10	110067671	110069100	+	0	NA	intron (NM_016824, intron 1 of 14)	MER2|DNA|TcMar-Tigger	-60004	NR_038943	100505933		NR_038943	ENSG00000203876	ADD3-AS1	-	ADD3 antisense RNA 1	ncRNA
124159	chr19	56105051	56105900	+	0	NA	intron (NM_001351682, intron 1 of 1)	HY3|scRNA|scRNA	15820	NM_001351682	126208		NM_001002836	ENSG00000142409	ZNF787	TIP20	zinc finger protein 787	protein-coding
66643	chr14	63866871	63867430	+	0	NA	intron (NM_015180, intron 1 of 114)	MIRb|SINE|MIR	14146	NM_182914	23224		NM_015180	ENSG00000054654	SYNE2	EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding
155367	chr22	38291471	38292600	+	0	NA	intron (NM_152221, intron 10 of 10)	AluSz|SINE|Alu	-19025	NM_012264	25829		NM_012264	ENSG00000198792	TMEM184B	C22orf5|FM08|HS5O6A|HSPC256|SLC51C2	transmembrane protein 184B	protein-coding
43762	chr11	86201921	86202980	+	0	NA	Intergenic	Intergenic	-41934	NM_001330334	8726		NM_003797	ENSG00000074266	EED	COGIS|HEED|WAIT1	embryonic ectoderm development	protein-coding
84870	chr16	31174671	31175180	+	0	NA	Intergenic	Intergenic	-5185	NM_001170634	2521		NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS|altFUS	FUS RNA binding protein	protein-coding
45356	chr11	118247021	118248430	+	0	NA	intron (NM_198275, intron 1 of 5)	FLAM_C|SINE|Alu	4640	NR_104404	196264		NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding
137011	chr2	190659471	190659830	+	0	NA	exon (NM_001321312, exon 2 of 8)	exon (NM_001321312, exon 2 of 8)	492	NM_001321315	4664		NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding
80209	chr16	2159101	2159930	+	0	NA	intron (NM_032271, intron 1 of 20)	intron (NM_032271, intron 1 of 20)	3733	NM_032271	84231		NM_032271	ENSG00000131653	TRAF7	CAFDADD|RFWD1|RNF119	TNF receptor associated factor 7	protein-coding
67228	chr14	68955221	68955880	+	0	NA	intron (NM_001130004, intron 1 of 21)	intron (NM_001130004, intron 1 of 21)	23752	NM_001130005	87		NM_001102	ENSG00000072110	ACTN1	BDPLT15	actinin alpha 1	protein-coding
145860	chr20	45910571	45911500	+	0	NA	promoter-TSS (NM_001242921)	promoter-TSS (NM_001242921)	-41	NM_001242921	5360		NM_006227	ENSG00000100979	PLTP	BPIFE|HDLCQ9	phospholipid transfer protein	protein-coding
101333	chr17	66725901	66726300	+	0	NA	intron (NM_002737, intron 8 of 16)	intron (NM_002737, intron 8 of 16)	-60972	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA
12513	chr1	108211421	108211880	+	0	NA	Intergenic	L1MC4|LINE|L1	-11307	NM_013386	29957		NM_013386	ENSG00000085491	SLC25A24	APC1|SCAMC-1|SCAMC1	solute carrier family 25 member 24	protein-coding
223534	chr8	144137101	144139030	+	0	NA	exon (NM_016458, exon 1 of 6)	exon (NM_016458, exon 1 of 6)	291	NM_016458	51236		NM_016458	ENSG00000235173	HGH1	BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B	HGH1 homolog	protein-coding
238334	chrX	149538101	149538300	+	0	NA	intron (NR_027455, intron 2 of 9)	L2c|LINE|L2	1552	NR_027455	100131434		NM_001039766	ENSG00000241769	EOLA1-DT	LINC00893	EOLA1 divergent transcript	ncRNA
120151	chr19	42228971	42229930	+	0	NA	TTS (NM_019884)	TTS (NM_019884)	9138	NM_001314033	116115		NM_133444	ENSG00000167625	ZNF526	DENNED	zinc finger protein 526	protein-coding
110104	chr19	1548971	1549530	+	0	NA	Intergenic	Intergenic	18808	NM_203304	399664		NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding
167903	chr3	136156971	136157130	+	0	NA	intron (NM_018133, intron 1 of 1)	intron (NM_018133, intron 1 of 1)	37418	NM_001145417	55167		NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	MSL complex subunit 2	protein-coding
69355	chr14	93994921	93995180	+	0	NA	Intergenic	MIRb|SINE|MIR	-2220	NR_024182	256369		NM_152777	ENSG00000175699	CCDC197	C14orf48|LINC00521|c14_5713	coiled-coil domain containing 197	protein-coding
33139	chr10	112379071	112379230	+	0	NA	intron (NM_016234, intron 1 of 20)	AluSq2|SINE|Alu	2952	NM_016234	51703		NM_016234	ENSG00000197142	ACSL5	ACS2|ACS5|DIAR13|FACL5	acyl-CoA synthetase long chain family member 5	protein-coding
57834	chr12	123243421	123243680	+	0	NA	intron (NM_001194995, intron 1 of 2)	AluY|SINE|Alu	9806	NM_001143905	91574		NM_152269	ENSG00000130921	MTRFR	C12orf65|COXPD7|SPG55|mtRF-R	mitochondrial translation release factor in rescue	protein-coding
238001	chrX	134803471	134804430	+	0	NA	promoter-TSS (NR_158603)	promoter-TSS (NR_158603)	-172	NR_158603	159091		NM_138819	ENSG00000156500	PABIR3	FAM122C	PABIR family member 3	protein-coding
99785	chr17	51164101	51164630	+	0	NA	intron (NM_001018136, intron 4 of 7)	AluY|SINE|Alu	-1171	NM_001018137	4831		NM_002512	ENSG00000243678	NME2	NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF	NME/NM23 nucleoside diphosphate kinase 2	protein-coding
126329	chr2	27362471	27362630	+	0	NA	Intergenic	AluSq2|SINE|Alu	-5516	NM_001035521	2976		NM_001521	ENSG00000115207	GTF3C2	TF3C-beta|TFIIIC-BETA|TFIIIC110	general transcription factor IIIC subunit 2	protein-coding
15275	chr1	149707921	149708850	+	0	NA	Intergenic	Intergenic	6176	NR_145442	644634		NM_001348147		LOC644634	-	uncharacterized LOC644634	ncRNA
130066	chr2	74470851	74471180	+	0	NA	TTS (NM_053050)	TTS (NM_053050)	1665	NM_053050	116540		NM_053050	ENSG00000204822	MRPL53	L53MT|mL53	mitochondrial ribosomal protein L53	protein-coding
156006	chr22	39935671	39936100	+	0	NA	intron (NM_001291828, intron 1 of 4)	intron (NM_001291828, intron 1 of 4)	9281	NM_001291828	9402		NM_004810	ENSG00000100351	GRAP2	GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38	GRB2 related adaptor protein 2	protein-coding
71558	chr14	106347371	106347780	+	0	NA	Intergenic	Intergenic	59901	NR_033375	338004		NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
167653	chr3	129633801	129634400	+	0	NA	Intergenic	Intergenic	-27424	NM_015103	23129		NM_015103	ENSG00000004399	PLXND1	CHTD9|PLEXD1	plexin D1	protein-coding
136638	chr2	179250171	179250430	+	0	NA	intron (NM_178123, intron 1 of 17)	L1MD1|LINE|L1	14532	NM_178123	91404		NM_178123	ENSG00000187231	SESTD1	SOLO	SEC14 and spectrin domain containing 1	protein-coding
148138	chr20	63483451	63484150	+	0	NA	Intergenic	AluY|SINE|Alu	-11145	NM_172108	3785		NM_004518	ENSG00000075043	KCNQ2	BFNC|DEE7|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2	potassium voltage-gated channel subfamily Q member 2	protein-coding
128960	chr2	64638071	64638480	+	0	NA	intron (NM_014755, intron 1 of 1)	intron (NM_014755, intron 1 of 1)	15638	NM_014755	9792		NM_014755	ENSG00000179833	SERTAD2	Sei-2|TRIP-Br2|TRIPBR2	SERTA domain containing 2	protein-coding
109322	chr19	588051	589010	+	0	NA	Intergenic	CpG	-1351	NM_001194	610		NM_001194	ENSG00000099822	HCN2	BCNG-2|BCNG2|EIG17|FEB2|GEFSP11|HAC-1	hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2	protein-coding
89732	chr16	89428601	89429450	+	0	NA	intron (NR_045839, intron 1 of 9)	intron (NR_045839, intron 1 of 9)	-1893	NR_110932	101927817		NR_110931		LOC101927817	-	uncharacterized LOC101927817	ncRNA
234611	chrX	19810451	19811080	+	0	NA	intron (NM_001353892, intron 2 of 17)	intron (NM_001353892, intron 2 of 17)	-10992	NM_001024666	30011		NM_031892	ENSG00000147010	SH3KBP1	AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18	SH3 domain containing kinase binding protein 1	protein-coding
82955	chr16	21898271	21898680	+	0	NA	Intergenic	Intergenic	-31740	NR_024456	100190986		NR_024456		LOC100190986	-	uncharacterized LOC100190986	ncRNA
155861	chr22	39472671	39472830	+	0	NA	intron (NM_002409, intron 1 of 1)	intron (NM_002409, intron 1 of 1)	4072	NR_126469	104502417		NR_126469	ENSG00000227188	MGAT3-AS1	TapSAKI	MGAT3 antisense RNA 1	ncRNA
151483	chr21	46285571	46287280	+	0	NA	promoter-TSS (NM_001314022)	promoter-TSS (NM_001314022)	83	NM_001314022	54059		NM_058181	ENSG00000182362	YBEY	C21orf57	ybeY metalloendoribonuclease	protein-coding
146286	chr20	49125371	49125730	+	0	NA	intron (NM_001322927, intron 4 of 11)	AluSz|SINE|Alu	62784	NM_017453	6780		NM_004602	ENSG00000124214	STAU1	PPP1R150|STAU	staufen double-stranded RNA binding protein 1	protein-coding
222907	chr8	142833151	142833250	+	0	NA	Intergenic	Intergenic	-1601	NM_002066	2765		NM_002066	ENSG00000104499	GML	LY6DL	glycosylphosphatidylinositol anchored molecule like	protein-coding
104781	chr17	81716871	81717030	+	0	NA	intron (NM_012140, intron 6 of 10)	intron (NM_012140, intron 6 of 10)	4666	NM_012140	1468		NM_012140	ENSG00000183048	SLC25A10	DIC|MTDPS19	solute carrier family 25 member 10	protein-coding
238280	chrX	149472721	149473080	+	0	NA	Intergenic	Intergenic	32406	NM_000202	3423		NM_000202	ENSG00000010404	IDS	ID2S|MPS2|SIDS	iduronate 2-sulfatase	protein-coding
155605	chr22	38802721	38802980	+	0	NA	Intergenic	Intergenic	-8707	NM_005740	10126		NM_005740	ENSG00000100246	DNAL4	MRMV3|PIG27	dynein axonemal light chain 4	protein-coding
82437	chr16	16327021	16328030	+	0	NA	intron (NR_146336, intron 20 of 34)	(CCCCAT)n|Simple_repeat|Simple_repeat	-1591	NR_103772	100288162		NR_103772		LOC100288162	-	uncharacterized LOC100288162	ncRNA
185163	chr5	119338381	119339180	+	0	NA	intron (NM_001286814, intron 1 of 1)	intron (NM_001286814, intron 1 of 1)	5605	NM_001286814	25816		NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding
212186	chr7	117011571	117012100	+	0	NA	intron (NR_161422, intron 1 of 14)	intron (NR_161422, intron 1 of 14)	-3077	NM_001369602	7982		NM_018412	ENSG00000004866	ST7	ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
56164	chr12	111402451	111403780	+	0	NA	Intergenic	Intergenic	-2808	NM_005475	10019		NM_005475	ENSG00000111252	SH2B3	IDDM20|LNK	SH2B adaptor protein 3	protein-coding
112680	chr19	7036401	7036600	+	0	NA	Intergenic	Intergenic	3673	NM_001164419	653656		NM_001164419	ENSG00000205718	MBD3L4	-	methyl-CpG binding domain protein 3 like 4	protein-coding
127102	chr2	37632701	37632900	+	0	NA	Intergenic	Intergenic	38842	NM_001371570	10602		NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
41525	chr11	66271501	66271980	+	0	NA	intron (NM_030981, intron 1 of 5)	intron (NM_030981, intron 1 of 5)	3101	NM_030981	81876		NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding
173586	chr4	10183401	10183730	+	0	NA	Intergenic	L1PA15|LINE|L1	-66766	NM_017491	9948		NM_005112	ENSG00000071127	WDR1	AIP1|HEL-S-52|NORI-1|PFITS	WD repeat domain 1	protein-coding
231210	chr9	129950071	129950230	+	0	NA	intron (NM_001363755, intron 6 of 15)	intron (NM_001363755, intron 6 of 15)	80545	NR_106914	102466750		NR_106914	ENSG00000276124	MIR6855	hsa-mir-6855	microRNA 6855	ncRNA
222657	chr8	141174671	141175530	+	0	NA	intron (NR_148197, intron 14 of 23)	intron (NR_148197, intron 14 of 23)	46511	NR_148197	22898		NM_014957	ENSG00000105339	DENND3	-	DENN domain containing 3	protein-coding
166144	chr3	111550351	111551050	+	0	NA	intron (NR_134917, intron 2 of 14)	L2a|LINE|L2	8503	NM_198196	10225		NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding
60310	chr13	40649971	40650330	+	0	NA	intron (NM_002015, intron 1 of 2)	MER41A|LTR|ERV1	16491	NM_002015	2308		NM_002015	ENSG00000150907	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
57017	chr12	120639921	120640900	+	0	NA	promoter-TSS (NM_001033677)	promoter-TSS (NM_001033677)	-209	NM_001033677	9478		NM_004276	ENSG00000157782	CABP1	CALBRAIN|HCALB_BR	calcium binding protein 1	protein-coding
192256	chr6	20238151	20238250	+	0	NA	Intergenic	LTR51|LTR|ERV1	-25731	NM_001080480	154141		NM_001080480	ENSG00000172197	MBOAT1	LPEAT1|LPLAT|LPLAT 1|LPLAT14|LPSAT|OACT1|dJ434O11.1	membrane bound O-acyltransferase domain containing 1	protein-coding
155955	chr22	39718321	39718780	+	0	NA	Intergenic	Intergenic	147797	NM_001003406	8911		NM_021096	ENSG00000100346	CACNA1I	Cav3.3|NEDSIS|ca(v)3.3	calcium voltage-gated channel subunit alpha1 I	protein-coding
9444	chr1	49764721	49764980	+	0	NA	intron (NM_001323573, intron 2 of 12)	L1PA15-16|LINE|L1	259104	NM_001323575	84871		NM_032785	ENSG00000186094	AGBL4	CCP6	AGBL carboxypeptidase 4	protein-coding
118493	chr19	35939871	35940030	+	0	NA	exon (NM_024509, exon 2 of 3)	exon (NM_024509, exon 2 of 3)	3576	NM_024509	79414		NM_024509	ENSG00000126243	LRFN3	FIGLER1|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
158413	chr22	50533521	50533800	+	0	NA	Intergenic	LTR2|LTR|ERV1	-1162	NM_001014440	440836		NM_001014440	ENSG00000177989	CIMAP1B	FAP123|ODF3B|ODF3L3	ciliary microtubule associated protein 1B	protein-coding
167754	chr3	132415721	132416230	+	0	NA	Intergenic	MIRb|SINE|MIR	-1527	NM_001329126	23317		NM_015268	ENSG00000138246	DNAJC13	PARK21|RME8	DnaJ heat shock protein family (Hsp40) member C13	protein-coding
140322	chr2	232523871	232524630	+	0	NA	intron (NM_001369848, intron 10 of 12)	CpG-17123	-1910	NM_001256657	1144		NM_000751	ENSG00000135902	CHRND	ACHRD|CMS2A|CMS3A|CMS3B|CMS3C|FCCMS|SCCMS	cholinergic receptor nicotinic delta subunit	protein-coding
17189	chr1	156240071	156240300	+	0	NA	TTS (NM_007221)	TTS (NM_007221)	-1999	NM_199173	632		NM_199173	ENSG00000242252	BGLAP	BGP|OC|OCN	bone gamma-carboxyglutamate protein	protein-coding
112569	chr19	6603871	6604600	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-13085	NM_001252	970		NM_001252	ENSG00000125726	CD70	CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A	CD70 molecule	protein-coding
171998	chr4	954401	954730	+	0	NA	intron (NM_032326, intron 8 of 10)	intron (NM_032326, intron 8 of 10)	19004	NM_001347	1609		NM_001347	ENSG00000145214	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase theta	protein-coding
96105	chr17	39629621	39630400	+	0	NA	exon (NM_001242464, exon 4 of 7)	exon (NM_001242464, exon 4 of 7)	1507	NM_001242464	84152		NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding
15622	chr1	150624051	150624930	+	0	NA	3' UTR (NM_207044, exon 3 of 3)	3' UTR (NM_207044, exon 3 of 3)	4643	NM_207047	2029		NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding
54823	chr12	94762801	94763400	+	0	NA	Intergenic	MER6A|DNA|TcMar-Tigger	-71298	NR_030171	574449		NR_030171	ENSG00000283998	MIR492	MIRN492|hsa-mir-492	microRNA 492	ncRNA
97042	chr17	42322471	42323380	+	0	NA	intron (NM_001369519, intron 20 of 23)	intron (NM_001369519, intron 20 of 23)	34869	NM_001288719	6776		NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding
201932	chr6	151440771	151441550	+	0	NA	intron (NM_001271937, intron 1 of 10)	intron (NM_001271937, intron 1 of 10)	10966	NM_017909	55005		NM_017909	ENSG00000155906	RMND1	C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3	required for meiotic nuclear division 1 homolog	protein-coding
123767	chr19	55091771	55092930	+	0	NA	intron (NM_017607, intron 18 of 21)	intron (NM_017607, intron 18 of 21)	11958	NM_017729	54869		NM_017729	ENSG00000131037	EPS8L1	DRC3|EPS8R1|PP10566	EPS8 signaling adaptor L1	protein-coding
54992	chr12	96350801	96351500	+	0	NA	intron (NM_002595, intron 1 of 16)	L1MB4|LINE|L1	49289	NM_002595	5128		NM_002595	ENSG00000059758	CDK17	PCTAIRE2|PCTK2	cyclin dependent kinase 17	protein-coding
173807	chr4	17808421	17809080	+	0	NA	intron (NM_017741, intron 1 of 2)	AluSx|SINE|Alu	2007	NM_001345885	54876		NM_017741	ENSG00000163257	DCAF16	C4orf30	DDB1 and CUL4 associated factor 16	protein-coding
30446	chr10	79072421	79073080	+	0	NA	intron (NM_020338, intron 1 of 24)	intron (NM_020338, intron 1 of 24)	3784	NM_020338	57178		NM_020338	ENSG00000108175	ZMIZ1	MIZ|NEDDFSA|RAI17|TRAFIP10|ZIMP10	zinc finger MIZ-type containing 1	protein-coding
73377	chr15	42548121	42549830	+	0	NA	promoter-TSS (NM_153260)	promoter-TSS (NM_153260)	137	NM_001130447	55142		NM_018097	ENSG00000137814	HAUS2	C15orf25|CEP27|HsT17025	HAUS augmin like complex subunit 2	protein-coding
121445	chr19	47037451	47037550	+	0	NA	intron (NM_002517, intron 6 of 11)	MIRb|SINE|MIR	2183	NM_001321086	4861		NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding
128648	chr2	61428601	61428800	+	0	NA	intron (NM_014709, intron 1 of 79)	L1MC5|LINE|L1	-11323	NR_003707	100124537		NR_003707	ENSG00000206937	SNORA70B	-	small nucleolar RNA, H/ACA box 70B	snoRNA
204115	chr7	2249971	2250130	+	0	NA	intron (NR_160264, intron 2 of 2)	intron (NR_160264, intron 2 of 2)	739	NR_160264	4521		NM_002452	ENSG00000106268	NUDT1	MTH1	nudix hydrolase 1	protein-coding
55236	chr12	101855321	101855580	+	0	NA	Intergenic	MER61D|LTR|ERV1	-22130	NM_018370	55332		NM_018370	ENSG00000136048	DRAM1	DRAM	DNA damage regulated autophagy modulator 1	protein-coding
97554	chr17	44077921	44078180	+	0	NA	3' UTR (NM_001015053, exon 27 of 27)	3' UTR (NM_001015053, exon 27 of 27)	7139	NM_001319945	92579		NM_138387	ENSG00000141349	G6PC3	SCN4|UGRP	glucose-6-phosphatase catalytic subunit 3	protein-coding
93756	chr17	19975521	19976150	+	0	NA	intron (NM_007202, intron 1 of 14)	intron (NM_007202, intron 1 of 14)	1993	NM_007202	11216		NM_007202	ENSG00000108599	AKAP10	AKAP-10|D-AKAP-2|D-AKAP2|PRKA10	A-kinase anchoring protein 10	protein-coding
96498	chr17	40310001	40310880	+	0	NA	intron (NM_000964, intron 1 of 8)	intron (NM_000964, intron 1 of 8)	1260	NM_000964	5914		NM_000964	ENSG00000131759	RARA	NR1B1|RAR|RARalpha	retinoic acid receptor alpha	protein-coding
239518	chrY	56835521	56836000	+	0	NA	Intergenic	Intergenic	-118495	NM_005840	10251		NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
35261	chr11	862901	863100	+	0	NA	intron (NM_001025235, intron 4 of 8)	intron (NM_001025235, intron 4 of 8)	18554	NM_001025237	7106		NM_003271	ENSG00000214063	TSPAN4	NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4	tetraspanin 4	protein-coding
31269	chr10	92239371	92240300	+	0	NA	exon (NM_001178137, exon 2 of 10)	exon (NM_001178137, exon 2 of 10)	3444	NM_001178137	22849		NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding
14564	chr1	145011771	145012230	+	0	NA	intron (NM_001385227, intron 2 of 8)	L2a|LINE|L2	-82296	NR_144320	728833		NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding
208233	chr7	65379601	65379930	+	0	NA	intron (NM_001287534, intron 1 of 1)	intron (NM_001287534, intron 1 of 1)	5910	NM_001287533	168374		NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
63386	chr13	114061121	114061430	+	0	NA	intron (NM_001320821, intron 2 of 25).2	intron (NM_001320821, intron 2 of 25).2	16680	NM_001320822	22821		NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
171966	chr4	905371	905930	+	0	NA	intron (NM_001318134, intron 1 of 24)	(CCACG)n|Simple_repeat|Simple_repeat	26666	NM_005255	2580		NM_005255	ENSG00000178950	GAK	DNAJ26|DNAJC26	cyclin G associated kinase	protein-coding
131234	chr2	95420951	95421130	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	18332	NM_016044	51011		NM_016044	ENSG00000115042	FAHD2A	CGI-105	fumarylacetoacetate hydrolase domain containing 2A	protein-coding
95362	chr17	35865871	35866100	+	0	NA	intron (NM_152781, intron 2 of 14).2	intron (NM_152781, intron 2 of 14).2	2906	NM_001321395	256957		NM_152781	ENSG00000270379	HEATR9	C17orf66	HEAT repeat containing 9	protein-coding
107585	chr18	48848321	48848780	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	94257	NM_001190823	4092		NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding
110565	chr19	2130221	2130480	+	0	NA	intron (NM_001374799, intron 6 of 31)	intron (NM_001374799, intron 6 of 31)	21216	NM_003938	8943		NM_003938	ENSG00000065000	AP3D1	ADTD|HPS10|hBLVR	adaptor related protein complex 3 subunit delta 1	protein-coding
209923	chr7	92527371	92529950	+	0	NA	promoter-TSS (NM_001282677)	promoter-TSS (NM_001282677)	-135	NM_032120	84060		NM_032120	ENSG00000127993	RBM48	C7orf64|HSPC304	RNA binding motif protein 48	protein-coding
19501	chr1	175188771	175189830	+	0	NA	intron (NM_001162894, intron 1 of 3)	intron (NM_001162894, intron 1 of 3)	3476	NM_014656	9674		NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding
127474	chr2	42228221	42228480	+	0	NA	intron (NM_019063, intron 1 of 22)	intron (NM_019063, intron 1 of 22)	-58119	NR_110584	102723824		NR_110584		EML4-AS1	-	EML4 antisense RNA 1	ncRNA
226344	chr9	69549371	69549650	+	0	NA	intron (NM_001163, intron 1 of 12)	intron (NM_001163, intron 1 of 12)	122861	NM_001163	320		NM_001163	ENSG00000107282	APBA1	D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA	amyloid beta precursor protein binding family A member 1	protein-coding
54781	chr12	94202551	94203130	+	0	NA	intron (NM_005761, intron 4 of 30)	intron (NM_005761, intron 4 of 30)	54263	NM_005761	10154		NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding
74111	chr15	53140941	53141050	+	0	NA	Intergenic	L1PA2|LINE|L1	24630	NR_147181	105370822		NR_147181	ENSG00000259237	LINC02490	-	long intergenic non-protein coding RNA 2490	ncRNA
194424	chr6	33088251	33088350	+	0	NA	3' UTR (NM_002121, exon 6 of 6).5	3' UTR (NM_002121, exon 6 of 6).5	-7552	NM_001242525	3113		NM_033554	ENSG00000231389	HLA-DPA1	DP(W3)|DP(W4)|DPA1|HLA-DP1A|HLA-DPA|HLA-DPB1|HLADP|HLASB|PLT1	major histocompatibility complex, class II, DP alpha 1	protein-coding
126023	chr2	25339401	25340000	+	0	NA	intron (NR_135490, intron 1 of 23)	intron (NR_135490, intron 1 of 23)	2225	NM_022552	1788		NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|HESJAS|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding
170278	chr3	184307671	184308030	+	0	NA	intron (NM_001278709, intron 16 of 18)	intron (NM_001278709, intron 16 of 18)	-6645	NM_001194947	1981		NM_004953	ENSG00000114867	EIF4G1	EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18	eukaryotic translation initiation factor 4 gamma 1	protein-coding
50092	chr12	44843571	44843950	+	0	NA	intron (NM_001145108, intron 2 of 19)	AluJb|SINE|Alu	31901	NM_001145109	4753		NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding
27046	chr10	27108521	27108780	+	0	NA	Intergenic	AluSz|SINE|Alu	-8156	NM_001256053	22852		NM_014915	ENSG00000107890	ANKRD26	THC2|bA145E8.1	ankyrin repeat domain containing 26	protein-coding
137884	chr2	200846651	200847050	+	0	NA	Intergenic	AluSx|SINE|Alu	17711	NM_001162407	1195		NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding
138310	chr2	203740801	203742280	+	0	NA	Intergenic	Intergenic	34901	NM_006139	940		NM_006139	ENSG00000178562	CD28	Tp44	CD28 molecule	protein-coding
123510	chr19	54214471	54214630	+	0	NA	Intergenic	SVA_D|Retroposon|SVA	8457	NR_135494	11025		NM_006864	ENSG00000204577	LILRB3	CD85A|HL9|ILT-5|ILT5|LILRA6|LIR-3|LIR3|PIR-B|PIRB	leukocyte immunoglobulin like receptor B3	protein-coding
130098	chr2	74515651	74515750	+	0	NA	exon (NM_016170, exon 2 of 3)	exon (NM_016170, exon 2 of 3)	1250	NM_016170	3196		NM_001534	ENSG00000115297	TLX2	HOX11L1|NCX	T cell leukemia homeobox 2	protein-coding
101039	chr17	64796401	64797000	+	0	NA	intron (NR_024386, intron 7 of 10)	intron (NR_024386, intron 7 of 10)	-14701	NR_026899	109286553		NR_026899	ENSG00000215769	ARHGAP27P1-BPTFP1-KPNA2P3	-	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	pseudo
231037	chr9	129612571	129613180	+	0	NA	intron (NM_199350, intron 6 of 6)	MIR|SINE|MIR	3991	NM_001286796	28989		NM_014064	ENSG00000148335	NTMT1	AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding
26533	chr10	21514571	21514930	+	0	NA	3' UTR (NM_207371, exon 4 of 4)	3' UTR (NM_207371, exon 4 of 4)	10932	NM_207371	387640		NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding
115538	chr19	15462701	15463000	+	0	NA	intron (NM_022904, intron 2 of 17)	AluY|SINE|Alu	1694	NM_022904	64926		NM_022904	ENSG00000105122	RASAL3	-	RAS protein activator like 3	protein-coding
40424	chr11	64172051	64172580	+	0	NA	Intergenic	SVA_F|Retroposon|SVA	-6202	NM_014067	28992		NM_014067	ENSG00000133315	MACROD1	LRP16	mono-ADP ribosylhydrolase 1	protein-coding
35592	chr11	1749921	1750180	+	0	NA	intron (NM_001170820, intron 1 of 2)	intron (NM_001170820, intron 1 of 2)	545	NM_001170820	402778		NM_001170820	ENSG00000244242	IFITM10	DSPA3	interferon induced transmembrane protein 10	protein-coding
217205	chr8	26352851	26353150	+	0	NA	intron (NM_002717, intron 3 of 9)	intron (NM_002717, intron 3 of 9)	29953	NR_144550	157489		NR_144550	ENSG00000293314	SDAD1P1	-	SDA1 domain containing 1 pseudogene 1	pseudo
23752	chr1	232648371	232648550	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-17964	NM_001377488	57568		NM_020808	ENSG00000116991	SIPA1L2	SPAL2|SPAR2	signal induced proliferation associated 1 like 2	protein-coding
1274	chr1	2317371	2317530	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	35211	NR_024489	100129534		NM_001127577	ENSG00000292993	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo
110472	chr19	2018701	2019000	+	0	NA	Intergenic	AluJb|SINE|Alu	-3136	NM_017797	55643		NM_017797	ENSG00000133243	BTBD2	-	BTB domain containing 2	protein-coding
74818	chr15	63478551	63478650	+	0	NA	Intergenic	Intergenic	-25911	NM_001256702	9960		NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding
73668	chr15	44728271	44729880	+	0	NA	promoter-TSS (NR_125376)	promoter-TSS (NR_125376)	87	NR_125376	100419583		NR_125376		LOC100419583	-	ring finger protein 4 pseudogene	pseudo
214364	chr7	149623051	149623530	+	0	NA	intron (NR_027789, intron 1 of 8)	intron (NR_027789, intron 1 of 8)	1500	NR_027788	79970		NM_024910	ENSG00000291118	ZNF767P	ZNF767	zinc finger family member 767, pseudogene	pseudo
25366	chr10	6418371	6418530	+	0	NA	intron (NM_001323267, intron 17 of 17)	intron (NM_001323267, intron 17 of 17)	68134	NR_148966	399716		NR_148966		LINC02656	-	long intergenic non-protein coding RNA 2656	ncRNA
69406	chr14	94053671	94054030	+	0	NA	intron (NM_020414, intron 7 of 8).2	intron (NM_020414, intron 7 of 8).2	27352	NM_020414	57062		NM_020414	ENSG00000089737	DDX24	-	DEAD-box helicase 24	protein-coding
18255	chr1	161063721	161064400	+	0	NA	intron (NM_001025598, intron 1 of 11)	MER11C|LTR|ERVK	5831	NM_181720	257106		NM_181720	ENSG00000186517	ARHGAP30	-	Rho GTPase activating protein 30	protein-coding
207813	chr7	50309801	50310100	+	0	NA	intron (NM_001291837, intron 1 of 6)	intron (NM_001291837, intron 1 of 6)	1250	NM_001291837	10320		NM_006060	ENSG00000185811	IKZF1	CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1	IKAROS family zinc finger 1	protein-coding
196726	chr6	45176251	45176550	+	0	NA	intron (NM_001350329, intron 2 of 10)	L1PA3|LINE|L1	21370	NR_030313	693171		NR_030313	ENSG00000207769	MIR586	MIRN586|hsa-mir-586	microRNA 586	ncRNA
131380	chr2	96248951	96249250	+	0	NA	3' UTR (NM_001193304, exon 4 of 4)	3' UTR (NM_001193304, exon 4 of 4)	16897	NM_017849	55654		NM_017849	ENSG00000135956	TMEM127	-	transmembrane protein 127	protein-coding
72392	chr15	31380451	31381630	+	0	NA	intron (NM_001302461, intron 1 of 1).3	AluSg|SINE|Alu	54205	NM_015995	51621		NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	KLF transcription factor 13	protein-coding